Organism name Ensembl version Gene name Gene Ensembl ID Transcript Ensembl IDs Rank Number of transcripts covered Total number of transcript Amplicon lenght Chromosome Fwd primer start Fwd primer stop Fwd primer sequence # of SNPs in Fwd primer Fwd primer Tm Rev primer start Rev primer stop Rev primer sequence # of SNPs in Rev primer Rev primer Tm Ensembl status Warnings Rattus norvegicus 81 5S_rRNA ENSRNOG00000041777 ENSRNOT00000063530 1 1 1 60 5 99616214 99616234 GGTCAAGCTAAACAGAGTCAG 59 99616174 99616192 AGTATTCCCAGGCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059800 ENSRNOT00000080157 2 1 1 60 2 126678670 126678689 CTAGAGGACTGCAGGTATGG 59 126678629 126678649 TCTCCTCTATGACACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052755 ENSRNOT00000087104 2 1 1 60 2 85008812 85008831 CAGAGAAGATTAGCATGGCC 59 85008771 85008789 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054205 ENSRNOT00000079474 2 1 1 60 2 48414254 48414275 ACATATTGGGACAATACAGGGA 59 48414215 48414234 AATTTGCATGTTGTCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055198 ENSRNOT00000087276 1 1 1 62 2 44247236 44247254 CTGCTCACTTTGACAGCAC 60 44247280 44247298 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059307 ENSRNOT00000084167 1 1 1 60 2 145884819 145884840 TGTTCATCAATGAGTGACAGAG 59 145884780 145884801 ATCATTCAGATGTTCAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053308 ENSRNOT00000086904 1 1 1 60 5 150939610 150939630 ACGACACAGAGAAGATTAGCA 59 150939570 150939588 ACGCTTCACAAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053083 ENSRNOT00000088302 1 1 1 60 16 35258610 35258632 CAATGGCAGTATCATACATAGCC 60 35258572 35258593 TTCAATTAGCAGTAATCACGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056014 ENSRNOT00000087465 1 1 1 60 8 116766386 116766404 CACAGATCTTGCTGCTGAC 59 116766426 116766446 CAGCTTCGGTATACTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054670 ENSRNOT00000078654 1 1 1 60 11 64397268 64397292 CCATCTAGTAAAGATGGGAATACAG 59 64397232 64397250 CGTGTTATCCTTGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059993 ENSRNOT00000085968 1 1 1 64 8 32053296 32053314 AATGAGGTTTATCCGAGGC 57 32053342 32053360 TCCATGTCCAAGACAACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000054737 ENSRNOT00000077341 2 1 1 65 8 96238795 96238816 TGATGATCCTATCCCGAATCTG 59 96238751 96238769 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057521 ENSRNOT00000080149 1 1 1 60 8 62185557 62185580 GAGAGTTAAGCTTCTAAGACTTCC 59 62185520 62185541 GGATAATGTCAAATACACCACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056680 ENSRNOT00000083348 1 1 1 60 11 47319494 47319514 AGAGGAGATTAGTGTGATCCC 59 47319536 47319554 GCAGGGAACACTTCATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 pRNA ENSRNOG00000051863 ENSRNOT00000087420 2 1 1 60 8 107808380 107808398 AGACATCACCGAACATGAC 58 107808338 107808359 GACACAGGGATAAACATGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057446 ENSRNOT00000083954 2 1 1 60 8 110837276 110837295 CCGTGTAGAGATTAGCATGG 58 110837317 110837336 GTAAGGCTCCACAAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000058606 ENSRNOT00000080499 3 1 1 60 8 13870195 13870216 TGTGGCTACATTAAGATACAGG 58 13870234 13870255 GTCACCACTGTCATTTAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000059745 ENSRNOT00000087097 2 1 1 60 5 8012951 8012969 AGCAATTGTGGTTACAGCG 59 8012909 8012927 CAGGAAAGAGTAGCACCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050253.1 ENSRNOG00000044599 ENSRNOT00000069866 2 1 1 66 5 158439018 158439036 TTGGATATGCAGCTGACCA 59 158438970 158438988 AAGCCACAGTTACCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058534 ENSRNOT00000090841 1 1 1 60 2 250960752 250960773 TCAAGGTTCATTTGAGTAGCTG 59 250960789 250960812 TTCCTAGTCAGTCTTATCAGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056035 ENSRNOT00000090043 1 1 1 61 11 67567113 67567134 CAGCAGGTCAATTTAACATTGG 59 67567073 67567091 GTCATCATTGAGCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058814 ENSRNOT00000087256 3 1 1 60 2 109632955 109632975 ATCGCTTGACAAGTTATGTGG 59 109632997 109633015 GGAAAGTTTCACAGGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044353 ENSRNOT00000069620 3 1 1 67 8 67470137 67470155 CCTGAATGCTCTCAACCTC 58 67470186 67470204 CATCCGAGTACCAACCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058948 ENSRNOT00000081732 1 1 1 60 16 64345300 64345320 ATCACCTTTCTCCCTCATACC 59 64345341 64345360 TCTTGATTGAGTGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 1 1 1 85 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199324 35199342 AAACAGTGGTGAGATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055668 ENSRNOT00000087388 1 1 1 60 2 255121132 255121153 CTCTTCTTTGAATGAAGGAAGC 58 255121093 255121114 AATTCAGATGTTCACGGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055202 ENSRNOT00000079175 1 1 1 63 X 94303393 94303415 GGAACGATACAGAGAAGATTAGC 59 94303352 94303373 GTGTCATATTCATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037729.1 ENSRNOG00000052455 ENSRNOT00000081986 3 1 1 81 X 29174891 29174910 ATATGTTGTCAGTTGCTGGG 58 29174952 29176347 GGAATATCAAAGAAGCCCTGG 59 Novel Rattus norvegicus 81 SNORA8 ENSRNOG00000052441 ENSRNOT00000080180 1 1 1 60 8 72701190 72701213 GTGCGATAGAAATTCACTATCTGG 60 72701153 72701173 CAGGTTTAACATGCACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057474 ENSRNOT00000081241 2 1 1 76 16 73461213 73461231 ATGAGGTTTATCCGAGGCG 60 73461155 73461174 TAATTACATCGCTGTCCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061823 ENSRNOT00000082503 2 1 1 60 16 18197783 18197803 GAGAACAGGTCTTCAGTAAGG 58 18197823 18197843 TGAAGGTTCTAGGAAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059821 ENSRNOT00000081575 2 1 1 60 8 22717962 22717984 GAATAAAGAGGCTTAGTATGGCC 59 22717924 22717945 ACGGAATATTCGCAGATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055427 ENSRNOT00000083041 2 1 1 60 16 70579575 70579598 ATTCTACCTTCCCTCATAGAAGAG 59 70579616 70579635 ACACAGCTATACATGTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060982 ENSRNOT00000085780 1 1 1 60 X 98033391 98033409 AGAGACTTTGACAGCCCAG 59 98033431 98033451 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053117 ENSRNOT00000083416 1 1 1 60 X 154843065 154843084 ACACAAGCATCAGTAGATGG 58 154843024 154843045 TGTTAGGCTACTAAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051700 ENSRNOT00000077351 1 1 1 60 X 99119514 99119533 TAACTTAGCTGATTGGGCTG 58 99119473 99119491 ACACAAGGAGCAAAGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051700 ENSRNOT00000077351 2 1 1 60 X 99119514 99119532 AACTTAGCTGATTGGGCTG 58 99119472 99119490 GACACAAGGAGCAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000060031 ENSRNOT00000079563 1 1 1 60 1 101121192 101121214 GCAGATGATGGTATATTCTCACG 59 101121154 101121172 CCTTTGGCATTATCGGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057887 ENSRNOT00000084201 1 1 1 60 9 79596974 79596993 GAGTTGGAATAGGAGCTTGC 59 79597015 79597034 GAAGGTACTGCAATACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA75 ENSRNOG00000052748 ENSRNOT00000080697 2 1 1 60 9 93369832 93369854 GAGAAAGTTCACAGAACTAGCAC 60 93369794 93369814 AACAGCCAAATAGATCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060084 ENSRNOT00000091563 1 1 1 60 4 56512047 56512065 GTCAGTAGGTGGCAGAAGG 60 56512083 56512107 TAGATACACTCATAGGTGAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128792.2 ENSRNOG00000057558 ENSRNOT00000091848 3 1 1 60 1 101449938 101449959 GCGGCTGGAAGATAAAGTG 59 101449982 101450001 CTTGCTTCAACAGTGTTTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 1 1 1 60 4 126592915 126592935 GCCTTTGCAGGTAAATTAGTC 58 126592957 126592975 GGAACTTCAGAGTCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060086 ENSRNOT00000091930 3 1 1 63 X 149156933 149156952 AATGGCAACAACAGCATAGG 59 149156889 149156907 TTCTGACTTGTGCAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061400.2 ENSRNOG00000060373 ENSRNOT00000091705 2 1 1 82 4 121704317 121704335 AGCTATGCCACAGTCAGTC 60 121704381 121704402 GCTATTCTGTCAAACATTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD77 ENSRNOG00000051793 ENSRNOT00000082736 1 1 1 60 17 73704755 73704775 CTGTGATATAGCATAGCTCGG 58 73704797 73704815 TAGGAGCGAAAGACACGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068066.1 ENSRNOG00000049222 ENSRNOT00000071274 2 1 1 60 9 80685830 80685851 TTAGTGATCAAGGGTGGAAGAG 60 80685872 80685890 CAAGACTACCAGCCTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058253 ENSRNOT00000090191 3 1 1 67 X 75529007 75529025 TTATCCATTGCACTCCGGA 59 75528958 75528976 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057259 ENSRNOT00000092057 1 1 1 67 9 110649037 110649056 TGGATGCTATGTCACATGTG 58 110649086 110649104 CTCTGAGCACAGACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037347.1 ENSRNOG00000046532 ENSRNOT00000073358 3 1 1 60 X 19215769 19215789 GTCTAGTTTGTGTTGCCTAGC 59 19215729 19215750 ATGTGACTACATACTAGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.2 ENSRNOG00000055449 ENSRNOT00000089603 1 1 1 60 3 102704055 102704073 TCATGGTCATTGCCAACAG 59 102704094 102704115 GAGATGATTAGCAGAACAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060556 ENSRNOT00000078546 1 1 1 62 17 78955056 78955074 CTGAGGTGCGATTATTGCT 58 78955100 78955118 TATGGCAAGTCCTCATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053375 ENSRNOT00000079056 3 1 1 65 6 117241414 117241433 CAATCTGGCTGTGACATCTG 59 117241368 117241386 TAGCCAGTCAGATCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070278.1 ENSRNOG00000051681 ENSRNOT00000077762 2 1 1 65 8 63291867 63291886 AAAGGAGGAAAGAAAGGCAC 58 63291687 63291705 CATGTGTAAAGGTGGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016310.1 ENSRNOG00000048867 ENSRNOT00000074692 2 1 1 90 14 96499569 96499587 CACAATTGCTCAACAGCCT 59 96499640 96501017 TTTGAAGAGCTCACCGAGAG 60 Novel InUTR Rattus norvegicus 81 U1 ENSRNOG00000059999 ENSRNOT00000078954 2 1 1 60 X 20520604 20520623 AGACACCACAGTCAAGAAGG 60 20520646 20520664 TATACCGAGTGCGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054461 ENSRNOT00000078521 3 1 1 60 3 38450031 38450049 GAGAAGCGAGGTATCCGAG 60 38450072 38450091 AGTGAGTCTGTTCCAAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000060642 ENSRNOT00000085606 3 1 1 60 X 123382855 123382873 ACTGGCTAGTGGAAATGAC 57 123382892 123382915 GTGGACTAGGAAGAATATGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058754 ENSRNOT00000089315 2 1 1 60 6 43429142 43429164 GCTTAGGATGACACAAAGAAGAC 60 43429182 43429202 CACAGATTTGCACAACATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054225 ENSRNOT00000082655 3 1 1 60 3 123643756 123643778 GATACAGAGAAGATTAGCATGGC 59 123643798 123643816 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054786 ENSRNOT00000079057 3 1 1 60 2 89239214 89239235 CTATTACTTTCCTTCCTCGCTG 59 89239255 89239274 TAACCAAACACTCAGCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057593 ENSRNOT00000090992 3 1 1 60 X 112166151 112166171 CACATGTACATCAGTAGGCAG 59 112166111 112166129 AGGTCAGAACACTGAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056717 ENSRNOT00000088756 3 1 1 60 3 8964879 8964897 AGTTGGAATAGGAGCTTGC 58 8964837 8964856 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059048 ENSRNOT00000079127 1 1 1 60 10 74989687 74989705 GTGCTTGCTTCAGTAGCTC 59 74989645 74989664 AGAGGCCATGCTAATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 3 1 1 81 1 168073013 168073031 CACTCGTGTCAACAGTCTC 58 168073073 168073096 CACATAGGAGAAGAGGATAAGG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000061766 ENSRNOT00000079181 1 1 1 60 16 61888929 61888947 GAGAAGATTAGCATGGCCC 58 61888971 61888989 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122968.2 ENSRNOG00000055261 ENSRNOT00000081962 1 1 1 99 3 52588347 52588365 CAGAGCAAAGAGCAGAGTG 59 52588427 52600474 TGAGATGATCCTGTTCCGAG 59 Novel Rattus norvegicus 81 AABR07026353.1 ENSRNOG00000051800 ENSRNOT00000085716 1 1 1 95 16 73680443 73680461 GGTCTGTTACTGAGCTCCC 60 73680366 73680384 CTTGTTTCCTGCTGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053797 ENSRNOT00000081039 2 1 1 60 1 227935212 227935230 GTGTCAATAGGTGGCAGAG 58 227935170 227935190 TGTACAAAGCTCAGAACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030524.1 ENSRNOG00000028427 ENSRNOT00000033244 3 1 1 60 10 91753198 91753217 GACTCTTTCTACCTGCAGTC 58 91753240 91753258 GGAGTTCCTCATCTAGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057592 ENSRNOT00000081504 2 1 1 60 7 143979111 143979131 CTTGGAACAACACAGAGATCC 59 143979147 143979171 CTTCATGTACTTGTGTATCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054789 ENSRNOT00000087705 3 1 1 60 3 12600247 12600268 ACTGACAGTCCTTTATTCATCC 58 12600208 12600227 CATAAGACAGCTTTGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061721 ENSRNOT00000080731 3 1 1 62 7 12102971 12102991 GGAACGACACAGAAGATTAGC 59 12102929 12102947 AACGCCTCATGAATTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063802.1 ENSRNOG00000059553 ENSRNOT00000078347 2 1 1 61 6 49401768 49401786 CTTGTTGGAGGAAGTGTGG 58 49401725 49401743 AGCCAGGCTTAGATTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000058152 ENSRNOT00000082390 2 1 1 87 1 48027215 48027233 GAGCAGTTATACGCATGGG 59 48027146 48027168 GTCTAGACCATTCTACAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053887 ENSRNOT00000082467 1 1 1 60 16 37180901 37180921 GAATTCAATGGCTGAGGTGAG 59 37180861 37180883 TGTAGTCTGAATTGGGTTAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2787.1 ENSRNOG00000046036 ENSRNOT00000081605 1 1 1 60 1 271255425 271255443 CTCCACGGCAGGAATAGAG 60 271255383 271255401 AATCCTCCATCTCGTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0791.1 ENSRNOG00000051069 ENSRNOT00000076801 1 1 1 120 5 74821301 74837518 TAGTTCTGTGCATCTGGGT 58 74954393 74954411 TAGCATCGTCAGAAAGCTG 58 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000048993 ENSRNOT00000075536 3 1 1 60 2 78170296 78170314 GGAGTTCTGGGCTGTAGTG 60 78170336 78170356 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062512.1 ENSRNOG00000053339 ENSRNOT00000086465 2 1 1 80 4 180426509 180426528 AAGCTGGAGTCCACTATGAG 59 180425876 180426468 CCTTTGTTCTGTCATCTGCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057611 ENSRNOT00000081795 1 1 1 60 X 38392668 38392688 TGGAGATGACAAGGACAAGTC 60 38392707 38392728 GAACTTATTTGGAGACTCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056315 ENSRNOT00000090261 3 1 1 60 2 223523969 223523990 GATACAGAGGAGATTAGCATGG 58 223523930 223523948 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.2 ENSRNOG00000059160 ENSRNOT00000081495 3 1 1 101 5 163879669 163898846 ACTCTTCAGGGTTTCTTAACCT 59 163898907 163898926 TACATCCATGTACAGTGCCC 60 Novel Rattus norvegicus 81 AABR07070185.1 ENSRNOG00000047152 ENSRNOT00000071014 3 1 1 60 8 56642227 56642245 TCTGGAAGGTGATCGACTC 59 56642268 56642287 CAGACTTACTCCTTACCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.1 ENSRNOG00000050816 ENSRNOT00000074447 3 1 1 60 4 114940934 114940955 GCCTTAAACTCAAAGATCCACC 60 114940976 114940994 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000058445 ENSRNOT00000083773 3 1 1 60 8 117588482 117588503 CAAGAAAGTCTCACCTATTCCA 58 117588443 117588463 GATCCTATATGACAGCTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096930.1 ENSRNOG00000046713 ENSRNOT00000075560 1 1 1 62 4 173988144 173988162 CAAAGCCTGAGAACGTGAC 59 173988188 173988206 ATCTCCTGAGAAGCCTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000057333 ENSRNOT00000079504 3 1 1 61 10 74765421 74765445 TACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071000.1 ENSRNOG00000051416 ENSRNOT00000047078 1 1 1 60 8 95943842 95943861 CTGGCTCTCAGATTGTTGAC 59 95943884 95943902 ACAGTGATGTCAGATGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000061788 ENSRNOT00000080151 2 1 1 60 2 18938133 18938153 AACATGCTACAGTGATGAAGG 58 18938172 18938193 CTACTCAACCTCTACTGTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055436 ENSRNOT00000090856 2 1 1 75 2 8987437 8987456 TTATCCATTGCACTCTGGCT 60 8987381 8987402 CACTGCCACAAATTATGTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD124 ENSRNOG00000055792 ENSRNOT00000082994 2 1 1 60 10 86626779 86626798 AAGGATTCTGAGCCTCAGAG 59 86626738 86626757 CTTTCTGAAGGAAGGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305178 ENSRNOG00000007532 ENSRNOT00000076713 1 1 1 80 3 9820041 9820060 ATGATCCTTTCCAAATGGCG 59 9818938 9820000 CTTCACTGACCTTGTCTTTGC 60 Novel Rattus norvegicus 81 AABR07055826.1 ENSRNOG00000054392 ENSRNOT00000086920 2 1 1 60 7 10587741 10587760 AAAGAAAGCACACTGGAGAG 58 10587700 10587720 TATGCAAAGGCTTTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019341.1 ENSRNOG00000058766 ENSRNOT00000085607 1 1 1 60 15 100348693 100348712 CAACTGCCTGTTCCAATGTC 60 100348652 100348671 TGTGTATTTGCACATGGGTG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07027753.1 ENSRNOG00000046334 ENSRNOT00000049182 1 1 1 82 17 43801956 43801974 TTCCTGGAGAACGTGATCG 60 43802020 43802038 TAGACCACATCCATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061400 ENSRNOT00000082361 3 1 1 61 10 56507209 56507227 TGGCTAAGATCAAGTGCAG 58 56507166 56507184 TGACAACCAGAGTTTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057168 ENSRNOT00000084703 1 1 1 61 15 17864484 17864502 AAGCCATGTCTCTGCTCAG 60 17864522 17864545 CTTGTTAGGCTACTAATCACTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038795.1 ENSRNOG00000055102 ENSRNOT00000088653 1 1 1 80 X 60864185 60864273 CTGAGTTAGGTGCTAAGGGT 59 60864124 60864143 TGGAGAAATGTGCACTTCTG 59 Novel Rattus norvegicus 81 AABR07060522.1 ENSRNOG00000036459 ENSRNOT00000054569 1 1 1 60 4 77479083 77479101 ATGTGGTCAGCTTCAAGGA 59 77479041 77479062 TAGTCAACAATTCCTAGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 1 1 1 60 9 52938018 52938037 TCTTCAGATCCCTCATAGCC 58 52938057 52938078 CCTTCTACAAGGACAACAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059527 ENSRNOT00000090012 2 1 1 60 9 16072222 16072243 GTACAGAGAAGATTAGCATGGC 59 16072183 16072203 GGAACGCTTTACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067024.1 ENSRNOG00000060699 ENSRNOT00000082814 1 1 1 80 9 26732423 26732442 CCTTGAAGATCCCTTGTGAC 58 26728795 26732380 CTGATGGAAGAGACCTCGT 59 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000059571 ENSRNOT00000078656 3 1 1 60 4 171047877 171047897 GCACACTATTAAAGCTCAGGG 59 171047837 171047857 TTCTGACATGCAGAAGTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD96 ENSRNOG00000060502 ENSRNOT00000088337 2 1 1 60 10 34151396 34151417 ATCCTAGTGATGACAAGGAGAC 59 34151438 34151456 GGACATGTCCTCATTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054501 ENSRNOT00000083019 3 1 1 65 6 52306142 52306161 CAAAGAAGCTTAGCACTCCC 59 52306096 52306114 CATGTGGGTGTTGTTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053799 ENSRNOT00000083306 3 1 1 60 6 59461288 59461306 TCTGATGCCTCCTCTATCC 58 59461246 59461264 AGAGCAAGCTCCTATTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362027 ENSRNOG00000032825 ENSRNOT00000042688 1 1 1 60 10 38024745 38024764 TGAAGATGATCAGACAAGGC 58 38024704 38024722 AAAGCTGGACAGTTGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008420.2 ENSRNOG00000058320 ENSRNOT00000079900 1 1 1 86 2 57677798 57677816 TTCTGTTTACCTTCCCGGT 59 57677865 57677885 TGAAGGCTACTGGGAAAGAG 59 Novel Rattus norvegicus 81 SNORD62 ENSRNOG00000056657 ENSRNOT00000078591 1 1 1 60 3 11240158 11240179 GGTTCCAATAGATCCTTCTGAC 58 11240200 11240218 TGTCCTCTTCATCTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001910.1 ENSRNOG00000051570 ENSRNOT00000078809 3 1 1 60 1 61871958 61871978 GACAAATGCTTTACTGACGAG 58 61871918 61871939 TACTTCCTGTATGTATGCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000060251 ENSRNOT00000090297 2 1 1 60 17 73704759 73704778 GATATAGCATAGCTCGGCAG 58 73704800 73704819 CAGATAGGAGCGAAAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110709.1 ENSRNOG00000046944 ENSRNOT00000073153 3 1 1 60 1 274306191 274306209 CTTAGACAAGTGCCAAGCC 59 274306233 274306251 ATACATGGGCTCATCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098160.1 ENSRNOG00000055322 ENSRNOT00000086578 3 1 1 80 10 89892904 89892928 AAAGTGGAGGAACTGACTCTG 60 89892967 89892988 CTAAGAACAAACCATCCCTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060392 ENSRNOT00000088913 3 1 1 62 17 31777182 31777204 CTGACTTATAGAGACTATGCAGG 58 31777142 31777160 TTCTGCCACCTACAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057065 ENSRNOT00000082117 3 1 1 66 17 31913591 31913610 TCAGTGCTGTATCACATGTG 58 31913544 31913562 AAATACTGGGCAGACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052797 ENSRNOT00000089020 2 1 1 61 8 95543709 95543727 CACTGTGTCACATGTGCAC 60 95543666 95543685 CACTGAGCATAAACAAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099444.2 ENSRNOG00000052606 ENSRNOT00000088222 2 1 1 69 4 78227730 78227748 ATAAGCCATCCTCGCTCAC 60 78227782 78227800 GAGGAAAGGAAGTCCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000056342 ENSRNOT00000081473 2 1 1 60 2 236773996 236774014 GCTTATCCATTGCACTCCG 59 236774038 236774056 CGAGTTTCCCACATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027633.1 ENSRNOG00000049875 ENSRNOT00000072320 1 1 1 60 17 39668876 39668896 TAGTTCAGCTGTTTGATCCTC 58 39668836 39668856 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041731.1 ENSRNOG00000059257 ENSRNOT00000077890 2 1 1 60 X 137997876 137997894 TGGCAAGGTCCTACTTCTC 59 137997917 137997936 AACCACACGAGGATATAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027736.1 ENSRNOG00000045861 ENSRNOT00000074836 1 1 1 60 17 42895337 42895355 GCACTAGTTCAGCTGTTCG 59 42895295 42895315 CATGGATGAGAAGATGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057581 ENSRNOT00000088692 3 1 1 60 17 27281064 27281086 GATACAGAGAAGATTAGCATGGC 59 27281105 27281124 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016779.1 ENSRNOG00000052764 ENSRNOT00000083199 3 1 1 78 14 114047342 114047365 GAGTGCAAGATAGAGTATGAAGAC 59 114029242 114029261 TCTTGATTTCATGCATCCGC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052479 ENSRNOT00000083986 2 1 1 60 X 74879221 74879242 GAACAATGCAGAGAAGATTACC 58 74879182 74879201 GCTTTGAGAATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051671.1 ENSRNOG00000053329 ENSRNOT00000079487 3 1 1 60 3 19072068 19072088 GTTACATGTACTGGTACCAGC 59 19072105 19072128 GTGTCATAAATCCAGAGTTTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061724 ENSRNOT00000085314 1 1 1 60 2 62691070 62691089 ACATCCATAGCAGTCTGACC 59 62691029 62691047 AACCAAGCAGTCAAGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060162 ENSRNOT00000089861 2 1 1 68 2 188408399 188408420 GCAGCACATATACTGAAATTGG 58 188408352 188408372 TTGTGTCATCCTTACAAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052799 ENSRNOT00000090061 1 1 1 60 10 85256453 85256472 CTTTGGAGGAACACAGAGAC 58 85256412 85256431 TTCATATACTGGCCTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 3 1 1 61 18 40124213 40124233 CGAGGAAGGGATTCCTTCC 60 40124257 40124276 CTTTGCCGCAGTATCTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1564534 ENSRNOG00000032038 ENSRNOT00000043280 2 1 1 92 X 63054171 63054190 TTTAAGTGCCCTGGATTCTG 58 63054245 63056314 TACTCCAAGGGCAAGAGAC 59 Novel Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 3 1 1 99 5 160826743 160826763 ATAAGCCTGCTTGTCTTGC 59 160826831 160826849 CTTTCCCATCAGAGACCGT 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059490 ENSRNOT00000083534 1 1 1 60 14 30129541 30129564 CTCACTGATAAGTCGATATTAGCC 59 30129504 30129525 AGTCTGTAAGTTGTAAAGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052353 ENSRNOT00000080514 1 1 1 60 3 113392036 113392055 ATACAGAGAAGATCAGCACG 57 113391995 113392015 GGAACATTGCACAGATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054266 ENSRNOT00000091090 2 1 1 60 10 67489762 67489780 CTGCTTAGCTGTGTCTGTC 58 67489803 67489822 ACACTGAGTGCAGAAATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 3 1 1 73 16 20108509 20108528 CGTCATTTACGGAAAGTCAG 57 20108450 20108474 CACAGGTTTCTAGTCTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061633 ENSRNOT00000087642 1 1 1 61 10 49279952 49279970 ATGAGGTTTATCCGAGGCG 60 49279994 49280013 TGTTGGTAAAGTGCTTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 2 1 1 60 4 69970941 69970960 AAGAAGTTAGACCACAGGGA 58 69970898 69970917 CTTTGTTTAGCTCTGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000050152 ENSRNOT00000075483 1 1 1 80 18 54247824 54495024 TGGTCTTATGAGATGCAGCA 59 54495067 54495085 GCTGTTGTGAAGGTCTTGG 59 Novel Rattus norvegicus 81 AABR07066116.1 ENSRNOG00000051710 ENSRNOT00000088083 2 1 1 60 9 3238363 3238381 CATCTCCACCACGATTCAG 58 3238405 3238423 TACATGGGCTTTGGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059283 ENSRNOT00000090130 1 1 1 60 14 21783063 21783081 CTTGGTCGAAGATAGCCCT 59 21783102 21783123 TACTATACCCTCAACCAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005758.2 ENSRNOG00000060297 ENSRNOT00000083692 1 1 1 60 1 196471601 196471621 CATGATGGGTTCAATGATGTC 57 196471561 196471582 CTTTCAAGGTGAAAGACATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060318 ENSRNOT00000084473 2 1 1 60 2 224561413 224561435 GGAACGATACAGAGAAGATTAGC 59 224561455 224561473 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061810 ENSRNOT00000086013 1 1 1 60 4 156751797 156751815 AGATGCTATGACTTCGCTC 57 156751755 156751775 TCATGGGTACAAGTCATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061810 ENSRNOT00000086013 2 1 1 60 4 156751795 156751814 GATGCTATGACTTCGCTCAG 59 156751754 156751775 TTCATGGGTACAAGTCATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010787.1 ENSRNOG00000053939 ENSRNOT00000079146 1 1 1 85 2 151684434 151684452 TATTCCTAAACCCAGGCCG 59 151684366 151684386 CGAGCCTCTTATACCTTCCC 60 Novel Rattus norvegicus 81 AABR07010787.1 ENSRNOG00000053939 ENSRNOT00000079146 2 1 1 86 2 151684434 151684452 TATTCCTAAACCCAGGCCG 59 151684365 151684385 CCGAGCCTCTTATACCTTCC 60 Novel Rattus norvegicus 81 U3 ENSRNOG00000055743 ENSRNOT00000086670 3 1 1 61 10 74765421 74765445 TACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044501 ENSRNOT00000069768 1 1 1 60 10 58847792 58847811 GTCTGATCTTGGAAGCTGAG 58 58847834 58847852 CCATCTCAACTCCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008025.1 ENSRNOG00000032097 ENSRNOT00000050574 1 1 1 60 2 39507494 39507512 CCAAGTCCAAGAACCACAC 59 39507535 39507554 TTGATGTCATTTCTGTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052040 ENSRNOT00000088823 3 1 1 60 2 240772926 240772948 GATACAGAGAAGATTAGCATGGC 59 240772888 240772906 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hhipl2 ENSRNOG00000056400 ENSRNOT00000077166 2 1 1 80 13 101819394 101819413 CGGATCAGTCAGATGAAGGT 59 101819453 101821302 ATCTATCTCCAAGATGACCCTC 59 Novel Rattus norvegicus 81 Rn60_7_1407.1 ENSRNOG00000051446 ENSRNOT00000089630 3 1 1 81 7 142884370 142884820 TAAGCATGTAAGTCGGGTCC 60 142884862 142884882 TACCAGATTGTCCAAAGACCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053994 ENSRNOT00000083918 1 1 1 75 1 158057532 158057550 AGAAATGTTGCAGGTGTGG 59 158057475 158057494 GAGCATAGACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056952 ENSRNOT00000091329 3 1 1 61 3 148628947 148628969 CAATACAGAGATTAGAATGGCCC 59 148628988 148629008 ATGGAATGCTTCACCAATTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069011.1 ENSRNOG00000055895 ENSRNOT00000089124 3 1 1 80 8 5201990 5202010 ACCACTAACATTCGAAAGGGT 60 5201726 5201949 TAAAGGTCACCATGGTCTCC 59 Novel Rattus norvegicus 81 AABR07007730.1 ENSRNOG00000018045 ENSRNOT00000024269 3 1 1 60 2 26086129 26086150 GGAGTCTCATCATTGACTATGC 59 26086170 26086189 GCATAGGAGAAGAGTTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050561.1 ENSRNOG00000057128 ENSRNOT00000087911 3 1 1 99 5 169899626 169899646 ATAAGCCTGCTTGTCTTGC 59 169899714 169899732 CTTTCCCATCAGAGACCGT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060691 ENSRNOT00000078391 1 1 1 60 14 44221184 44221207 GTACTAACACTGGAACATACAGAG 59 44221147 44221167 TTGAATGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067762.1 ENSRNOG00000055383 ENSRNOT00000090305 3 1 1 80 9 61738619 61738649 ACGAATGGACAAAGGATGGT 60 61738690 61738710 TCCAGTAAACAACATCTCCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054522 ENSRNOT00000082811 3 1 1 79 12 23689116 23689134 CACTTGGCAGCACATACAC 60 23689055 23689075 AATTTGCATGTCCTCCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034366 ENSRNOT00000052489 2 1 1 60 14 59470603 59470624 GATCTCATCTGTTCTCAGAAGC 59 59470643 59470663 ATTCTCCATCCAAGTACTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128759.1 ENSRNOG00000016095 ENSRNOT00000021545 2 1 1 82 1 22529364 22529382 TTCCTCATTGCAAAGCAGC 59 22529452 22529470 GCTTTCCTCTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SCARNA16 ENSRNOG00000057444 ENSRNOT00000089532 2 1 1 61 14 86679616 86679634 CAGCCCTGTACCTTTAGCT 59 86679573 86679591 CAGGGAGGATGCTTCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000055001 ENSRNOT00000089120 1 1 1 60 1 174133773 174133794 AACTACTGACCTTATTCACTGG 58 174133814 174133833 TCACTAACCTGGTGACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006255.1 ENSRNOG00000036633 ENSRNOT00000054815 2 1 1 119 1 226038640 226038659 TTGAACTTTGTCCACATGGA 58 226038742 226038760 CACCTTCCCAATGAGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072546.1 ENSRNOG00000045578 ENSRNOT00000074537 1 1 1 80 17 29863005 29863027 AGATTTCACCTCACATGCG 58 29862943 29862962 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076224 3 1 2 81 X 70440108 70440224 GAACAACTTGCTAGATGGGC 59 70440046 70440065 TGACTGTTCGCACCATAGAG 60 Novel Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076322 1 1 2 80 X 70456913 70456932 CTGGAACTTGCTGTGTAGAC 59 70446742 70456873 GTCTCAGACACTTTAATCCCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055664 ENSRNOT00000083486 3 1 1 61 14 75953619 75953640 GTCACATGTGATTTGTAAGTGG 58 75953660 75953680 GTCAGAACACTGACTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061143 ENSRNOT00000083828 3 1 1 60 14 59631218 59631239 CATCAATTGACTCTGAATGTGC 58 59631258 59631278 GTTGAGTTGCCTACATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004263.1 ENSRNOG00000048799 ENSRNOT00000073974 3 1 1 60 1 134605342 134605361 TTGTCTTGGAACTCACTCTG 58 134605384 134605402 AGAGGCAGGTAGATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070270.1 ENSRNOG00000055900 ENSRNOT00000081624 1 1 1 64 8 62563532 62563550 GTCATGAGACAGGTGGAGG 60 62563485 62563506 CACATCTCATTTGTTGCTAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000057098 ENSRNOT00000083604 3 1 1 60 2 53432092 53432111 ACAGAAAGCTTAACACTCCC 58 53432051 53432071 TTAGAAGGTGTTAGGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045369 ENSRNOT00000070636 2 1 1 60 1 29352847 29352866 CATCTTAGTGCTTTCGTGGT 58 29352887 29352907 GAGCTGCTGTCTATATTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD52 ENSRNOG00000057819 ENSRNOT00000081740 3 1 1 60 2 120783165 120783185 TGAGTTCTTTGCAGACTAGAG 58 120783206 120783225 GGATACCTTGCATTCTCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128154.1 ENSRNOG00000060588 ENSRNOT00000090067 1 1 1 80 10 46484136 46484156 ACCAAGTTGAACTGGAAAGAC 59 46484075 46484097 ATAATGAGTTGTGATGTGCGAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058640 ENSRNOT00000089681 1 1 1 60 1 184495492 184495510 TGAGTATGACCCTGCTGTG 59 184495534 184495552 GATCAGCTCACTAGACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060992.2 ENSRNOG00000052923 ENSRNOT00000079328 2 1 1 60 4 102262086 102262107 AGAGTCTGCTACATAGTAATGG 57 102262128 102262146 TTTCCTGGCTTCTGAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052709 ENSRNOT00000088516 3 1 1 61 2 2720455 2720475 GCTGTGTCACATATGTGTCTG 59 2720414 2720435 ACACTGAGTATAGACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0829.4 ENSRNOG00000051100 ENSRNOT00000076902 1 1 1 86 13 77983547 77987970 CAGTAAAGGGTAAGATGATGGC 59 77983482 77983500 CTCTACTTATGGCCACGGG 60 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000089351 1 1 2 80 13 78991942 78996047 GTCTACACCACGTCAAGTG 58 78996089 78996109 GTAGAAGGTACATCCATGACG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057538 ENSRNOT00000082909 3 1 1 63 10 70581883 70581901 GTCACATGTGCATCAGCAG 60 70581838 70581857 TAGGTCAGAACATTGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040480.1 ENSRNOG00000057407 ENSRNOT00000085348 2 1 1 80 X 102032096 102035715 AGATGTGGTCCATGTCTGC 60 102032034 102032052 CCAGAAGGTACTTTGCCCA 60 Novel Rattus norvegicus 81 AABR07047744.1 ENSRNOG00000057999 ENSRNOT00000078109 3 1 1 61 5 45560756 45560774 CACCAACAATGGAGGAGTG 59 45560798 45560819 ATAGGTGACAGCAAATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000054743 ENSRNOT00000079198 3 1 1 60 1 116711089 116711110 CAACAGAAAGTCAAGAACAGGA 59 116711050 116711070 CTCAGCGTAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096353.1 ENSRNOG00000050136 ENSRNOT00000073324 3 1 1 60 1 256453645 256453663 CTGTCCTTCTTCTCGATGG 57 256453687 256453705 TTGTCTAAGGCTTTGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cylc1 ENSRNOG00000056740 ENSRNOT00000086866 2 1 1 86 X 82295540 82297038 CATGTTAATCCGTCAAACTAGG 57 82297082 82297103 TTCTTCATATCTGGCATAGGTG 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000056252 ENSRNOT00000085524 3 1 1 60 1 200427704 200427724 TGGTGTTCTTATATCAGTCGG 57 200427664 200427685 TCAAGTTAGGATGACCAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059948 ENSRNOT00000082973 2 1 1 61 1 56860112 56860133 GACAACAGAAAGTCAAGAACAG 58 56860072 56860092 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008681.1 ENSRNOG00000053969 ENSRNOT00000078674 3 1 1 87 2 70490255 70490275 AACAAGTAGAAGCCTACAGAG 57 70490323 70490819 TCCCTTACTGCTTTCAACTG 58 Novel Rattus norvegicus 81 AABR07049228.1 ENSRNOG00000056007 ENSRNOT00000090548 2 1 1 60 5 110978609 110978628 TTAGGAAGTCTCGTCTGCTC 59 110978568 110978587 ACAGTTACCACAACACTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049228.1 ENSRNOG00000056007 ENSRNOT00000090548 3 1 1 60 5 110978609 110978627 TAGGAAGTCTCGTCTGCTC 58 110978567 110978586 TACAGTTACCACAACACTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053632 ENSRNOT00000084607 3 1 1 60 4 166663759 166663777 GTTGATGAAGAACGCAGCT 59 166663717 166663736 CATGATCAATGTGTCCTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 1 1 1 60 10 61754622 61754643 GAGCCAATGATGTCTTTATCCA 59 61754664 61754682 TGTGCATCACTGAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052742 ENSRNOT00000084988 2 1 1 75 12 46863298 46863316 AATGAGGTTTATCCGAGGC 57 46863241 46863259 ATATTGCAAGTCGTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056949 ENSRNOT00000090093 1 1 1 60 1 75450314 75450333 GGTCTTAACATCTGTCACCC 58 75450354 75450374 TTAGCCACCAAGATTAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012342.1 ENSRNOG00000050472 ENSRNOT00000049525 1 1 1 60 2 194084435 194084453 CCTAACAAACCGCATTGAG 57 194084393 194084413 GGCCATCATTTCCTTAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057535 ENSRNOT00000084532 1 1 1 60 1 147142725 147142746 GAATGATACAGAGAAGATTGGC 57 147142686 147142705 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057535 ENSRNOT00000084532 2 1 1 60 1 147142720 147142741 ATACAGAGAAGATTGGCATGAC 58 147142681 147142700 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060403 ENSRNOT00000089786 2 1 1 60 2 54697620 54697640 CACATGTGCATCAGTAAGTGG 60 54697660 54697680 GGCAGAATACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015941.1 ENSRNOG00000058474 ENSRNOT00000079300 1 1 1 60 14 86952203 86952221 GTCTGGGAAGCTGAAAGTC 58 86952161 86952180 TTCTTTATGTTTGGCCAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.15 ENSRNOG00000050556 ENSRNOT00000072543 2 1 1 60 1 121197408 121197429 GTTATATTCCAGGACTTGTCCA 58 121197369 121197388 TTTCACACCATTGAGTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056602 ENSRNOT00000077130 2 1 1 60 1 234591798 234591817 CCAATTTCTCCCTCACTGTC 58 234591839 234591858 CTCTTCAGTGGAGTACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 3 1 1 60 1 84797429 84797448 TTCGGTCAAGGGTATACGAG 59 84797388 84797406 CTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 2 2 2 80 4 29561561 29561579 CTCTAGAAAGAACCCTGCC 57 29561621 29562210 TCAATCCAGTAGTAATCGCTC 57 Novel Rattus norvegicus 81 AABR07049134.5 ENSRNOG00000056992 ENSRNOT00000046837 3 1 1 60 5 107369954 107369972 TCAAGCTATCCCTGTCCTG 59 107369994 107370014 CTTTGATGTGAAGAGGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000051593 ENSRNOT00000085190 1 1 1 80 1 116994489 116994509 GGGTCTATGTCGATGATAGCA 59 116994429 116994450 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058751 ENSRNOT00000083673 3 1 1 60 12 2164179 2164197 CTGAATGGAGAAGCTTGGT 57 2164221 2164239 CTTGTTTGGAGGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059557 ENSRNOT00000086555 1 1 1 60 5 68338918 68338937 TGCATCCATAAGTTGCAGAG 58 68338877 68338896 CTCAGATCAGATCCGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073021.2 ENSRNOG00000057061 ENSRNOT00000089432 2 1 1 88 4 82229035 82229053 GAACGGCCAAATGTACTGC 60 82228241 82228259 CTGAAGGATGGGAGACGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 2 1 1 67 3 83589397 83589415 TAGAGGGATTGCAGGTGTG 59 83589446 83589464 TAGCCTCTGTCCTTTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 3 1 1 68 3 83589397 83589415 TAGAGGGATTGCAGGTGTG 59 83589446 83589465 ATAGCCTCTGTCCTTTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055376 ENSRNOT00000087776 3 1 1 60 12 37763035 37763057 TCTATCAAGTCTGTATGAGTGGC 60 37762997 37763016 TTGTGAGAGCTTGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058706 ENSRNOT00000083388 3 1 1 60 14 110455659 110455679 GGGAGAGGATTATCCATTGCA 60 110455619 110455642 CTCACATTTGGAGAAATCTCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056412 ENSRNOT00000088035 3 1 1 70 6 20219783 20219802 CCCTTGTCAACACAAATCCT 58 20219835 20219853 GTTATCTTTGCACAGGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055908 ENSRNOT00000088162 3 1 1 60 6 136005851 136005871 ACTGTCTGACACAATTTGAGC 59 136005893 136005911 AGAGAACACCGGAATAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055725 ENSRNOT00000089684 2 1 1 60 6 12054026 12054047 GCAGGACATGTATTAGAAATGG 57 12053987 12054007 TTACGTGTTATCCTTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063288.1 ENSRNOG00000055030 ENSRNOT00000084708 3 1 1 62 6 27129392 27129413 TTGAGTAGAAGACACCACATCC 60 27129351 27129369 CGGAGACCACCTAAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051642 ENSRNOT00000084378 1 1 1 60 14 55760099 55760119 CTGCTGTGTCACAAGTTTCTC 60 55760059 55760080 TTCAGCATAGACCTAGCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059991 ENSRNOT00000078217 2 1 1 60 5 2951271 2951291 TTAGAAACATTGCAGGTGTGG 59 2951231 2951250 CTCCTTTCTGCTACCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053169.1 ENSRNOG00000058767 ENSRNOT00000088395 2 1 1 105 3 94987838 94987857 GTTTGACCAACGTAACCCA 58 94987751 94987770 AAGAGGAAGTGATGAGTCCT 58 Novel Rattus norvegicus 81 AC117925.4 ENSRNOG00000057972 ENSRNOT00000089870 3 1 1 80 4 114822759 114822781 GATGGTAGTGGATAATGAAGAGG 58 114822564 114822720 TTACTGTCTTCATCCAGCCA 59 Novel Rattus norvegicus 81 SCARNA20 ENSRNOG00000061095 ENSRNOT00000085456 3 1 1 60 12 24679709 24679729 CATGGAGATCACATTCCTCCT 59 24679750 24679769 ATGCTCCTCACAGACTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 2 1 1 77 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655593 10655611 TTTCTCTGGGAACTCACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 3 1 1 77 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655593 10655612 TTTCTCTGGGAACTCACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052601 ENSRNOT00000079689 2 1 1 60 2 161553369 161553387 TCATGGACACTTCGAACCC 60 161553410 161553429 CTCAGACAGGTGTAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060169 ENSRNOT00000080034 2 1 1 60 1 59770152 59770174 TGATACAGAGGAGATTAGCATGG 60 59770194 59770212 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054059 ENSRNOT00000079461 1 1 1 62 1 236005227 236005248 GAATAACACAGAGAAGATCGGT 58 236005268 236005289 CCTGCTCATGAATTTGTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008670.1 ENSRNOG00000047646 ENSRNOT00000075575 2 1 1 180 2 69736984 69737003 CTCAGGAGCAGAAGATTCCA 59 69737141 69737165 GTTGAAGATTACTGGTCCTTTGAG 60 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000055387 ENSRNOT00000080795 3 1 1 69 1 85407597 85407616 TTGAACCAGTGGACAAAGAC 58 85407547 85407565 CAATGAGTTCTGGGTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0739.1 ENSRNOG00000051360 ENSRNOT00000076498 3 1 1 82 X 73005568 73008814 CATTGGAGCTCACCTTAGC 58 73008859 73008878 CACAGTCTTTAACAGCACCT 58 Novel Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 3 1 1 63 19 426229 427419 GATCCAAGAACAACAGGGC 59 427442 427464 CTCTCCAGGTCTTCATAATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA73 ENSRNOG00000054876 ENSRNOT00000088349 1 1 1 60 1 41003937 41003958 GCATATCCCTACAACTTCTCAG 59 41003979 41003997 CCTGCATAGTTTGTCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 3 1 1 66 18 76737340 76737358 TGAGCTCTATGACCCATGC 59 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056494 ENSRNOT00000080284 2 1 1 60 1 249539926 249539946 AGGCGATGTTTATGTTCAGTG 59 249539965 249539986 AGGCTGCTAATGAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128476.2 ENSRNOG00000057782 ENSRNOT00000080865 2 1 1 60 7 121135656 121135674 ATCAAGTCCTTCCTGTCCT 58 121135698 121135716 CACACCTGTCCTTACTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055044 ENSRNOT00000080505 3 1 1 60 3 129407086 129407105 TTTGGAGCAGACTCATAGCC 60 129407127 129407146 AGGACCTCAAAGTACCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.4 ENSRNOG00000059022 ENSRNOT00000089085 1 1 1 72 15 30785276 30785294 TACTCCTAGGCCTTCACCT 59 30785468 30785486 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 2 1 1 61 15 109346027 109346047 CAAAGCAACACTAACTTCTGG 58 109346070 109346089 TTCTAAGCAAACACAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035641.2 ENSRNOG00000059625 ENSRNOT00000090081 3 1 1 81 12 20668972 20668990 CTGCAAACAACAGAAGGCA 59 20669033 20671355 TGGTAGTACTGAGAGCATGTG 59 Novel Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 3 1 1 84 X 73370313 73370333 CTATAGCCAAGAACTTGCCTG 59 73370376 73371452 CCAGTTAACAGTATCAAGGTGG 59 Novel Rattus norvegicus 81 U12 ENSRNOG00000052392 ENSRNOT00000085863 2 1 1 60 2 28343120 28343139 GTCCTCACTGCTAATGTGAG 58 28343162 28343180 GGTGGTCACCTTAAGGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060947 ENSRNOT00000085467 3 1 1 60 2 161564699 161564717 TCATGGACAGTTTGAACGC 59 161564740 161564759 CTCAGACAGGTGTAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044959.1 ENSRNOG00000056298 ENSRNOT00000092166 2 1 1 78 20 28354908 28354926 ATCCTTCTGGACGACTCTG 59 28354846 28354864 TATACCCACAGCTGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018132.1 ENSRNOG00000045597 ENSRNOT00000085508 1 1 1 60 15 42270946 42270967 CTTCACCAACAGAATACAAGAG 57 42270907 42270928 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106505.1 ENSRNOG00000042948 ENSRNOT00000067348 1 1 1 82 1 169160103 169160132 AGTTCATACTGCTCTCCATGAG 60 169160042 169160060 GTGTGGACACAGAGACTCC 60 Novel Rattus norvegicus 81 AC110851.1 ENSRNOG00000061706 ENSRNOT00000078340 3 1 1 72 1 217746802 217746820 GGAAACTAAGGAGGGTTGG 57 217746860 217746878 CAACCCACTATTGAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004799.1 ENSRNOG00000010769 ENSRNOT00000014369 2 1 1 61 1 157921175 157921193 CACTGCAACGTTTGATCTG 58 157921132 157921150 CAAGTCCAAGCGGAAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054798 ENSRNOT00000080958 2 1 1 60 1 75508715 75508736 GTGTACCTGACTAATCTTGGTG 59 75508754 75508775 GTATAGAGGAGATAGGGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053777 ENSRNOT00000080526 2 1 1 62 2 71792443 71792461 CATAGAGGTGTCCCAGGTG 59 71792486 71792505 ATAGCCTACTCTCACTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.6 ENSRNOG00000058618 ENSRNOT00000081189 3 1 1 80 2 188691514 188691532 GTACACTGCTAGGGAGGTC 59 188691575 188691941 TAGAGGGCTTGGATGTAGAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000055969 ENSRNOT00000078443 2 1 1 60 6 115712512 115712530 CAAAGGCAATCTGCCTGTG 60 115712470 115712490 ATCAGCTGATTCAACTCTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052468 ENSRNOT00000077257 2 1 1 60 1 76751046 76751068 GGAACGATACAGAGAAGATTAGC 59 76751088 76751106 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 2 3 4 94 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336266 88341873 CATATTTCTTGCTGCTCCCA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061783 ENSRNOT00000090741 2 1 1 60 2 61359584 61359602 GTGTCAGTAGGTGGCAGAG 60 61359542 61359562 TTCATAGGTCAGAACACCGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017870.2 ENSRNOG00000054808 ENSRNOT00000084376 1 1 1 80 15 32060793 32060984 AGATTTGCTGGGTGAGAGG 59 32061028 32061046 TCAGAGCAGGATTGGTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 1 1 1 60 5 61714631 61714649 CAACCCAACTGATGAGGAC 58 61714673 61714691 TACACCCTTGACCTAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 3 1 1 60 5 61714543 61714561 ATCACCAGGGTTGATTTGG 58 61714585 61714603 CATGAGGGAGGAAAGGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 1 1 1 144 19 9112637 9112655 CATCTCTGCTGAGGGTGAC 60 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049347.1 ENSRNOG00000055254 ENSRNOT00000084226 3 1 1 92 5 117948628 117948647 AGCCATGTGATTCTCAATCC 58 117948700 117948724 GAACTGCTGTATCTCATTGGG 59 Novel Rattus norvegicus 81 AABR07070559.1 ENSRNOG00000054463 ENSRNOT00000081474 3 1 1 80 8 74982446 74982464 GTTTCACAGAACTCCCGTC 59 74982504 74982528 CTACCTACAGGTAAAGTCAACAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060877 ENSRNOT00000081491 1 1 1 60 9 26957092 26957110 GAGAGGAGAAAGGCTACGT 59 26957050 26957069 GAGGACCAACTAATAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000075913 2 1 2 130 13 84954976 84954994 AATCGACCACAGATGAGGC 60 84937285 84954883 ATCCCTTGTTGTCCTTCCTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058076 ENSRNOT00000078545 1 1 1 60 9 29505858 29505877 GCATTGCAGATATGACTGCT 59 29505900 29505918 AACACTGAACACAGACCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055373 ENSRNOT00000091564 3 1 1 102 5 133927455 133927473 AAGGTGTCTTTCCCAGGAC 59 133927371 133927392 AGGAGAACATGAACATAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000061755 ENSRNOT00000086489 2 1 1 64 1 3952655 3952673 GTTGAGTTCAGTTCAGGGC 59 3952609 3952627 AGCCAATTTCCATGTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 2 1 1 63 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947112 144947130 ATGTTCACAGGTCAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 3 1 1 64 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947113 144947131 GATGTTCACAGGTCAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017798.2 ENSRNOG00000060147 ENSRNOT00000089064 1 1 1 80 15 31178373 31178573 GGCTCCAATTAAACTGGGTG 59 31178616 31178634 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054921 ENSRNOT00000085121 1 1 1 60 1 21165711 21165730 TGTGCATCAGTAGGTAGCAG 60 21165753 21165771 TGTTCACAGAACACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015737.1 ENSRNOG00000049420 ENSRNOT00000070952 1 1 1 60 14 73167601 73167621 GAAAGTTTCCTCACAGAGTCC 59 73167642 73167661 AGAGTGCCTGTCTTATCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049886.1 ENSRNOG00000046811 ENSRNOT00000070940 1 1 1 60 5 142559356 142559376 TTTACTCTGTAGCCTAGGCTG 59 142559316 142559334 TGAGTTTGAGGCTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049886.1 ENSRNOG00000046811 ENSRNOT00000070940 3 1 1 60 5 142559356 142559374 TACTCTGTAGCCTAGGCTG 58 142559314 142559332 CATGAGTTTGAGGCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547954 ENSRNOG00000051364 ENSRNOT00000076931 3 1 1 84 10 70134367 70134387 GAACCTTAAGTCGGCTTTGTG 60 70133707 70134321 TGATGAAAGGGCTGGACTC 59 Novel Rattus norvegicus 81 snoZ6 ENSRNOG00000057911 ENSRNOT00000088985 3 1 1 61 20 11478099 11478117 TGAAGTTGCCTCAATCCGA 59 11478142 11478160 AGACAGATAAGACGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052544 ENSRNOT00000082610 3 1 1 68 14 5375516 5375534 GTTGAGTTCAGTTCAGGGC 59 5375466 5375487 TCTTAGTCACTTTCAATGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058210 ENSRNOT00000077410 2 1 1 60 5 144877395 144877414 GGGACTATGTCTTTGCTCAG 58 144877354 144877375 GCTAGGCTCTAATCATTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000054476 ENSRNOT00000080214 2 1 1 60 3 86024970 86024988 GTGTCTGAGACATCTCCTG 57 86024928 86024946 TTCCATTCCACTTCAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057525 ENSRNOT00000090274 1 1 1 60 14 58613209 58613230 AACGATACAGAGATTAGCATGG 58 58613251 58613269 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054412 ENSRNOT00000081393 2 1 1 61 5 159609539 159609562 GATACAGAGAAGATTAGCATGACC 59 159609581 159609600 GCAACACTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056982 ENSRNOT00000088733 2 1 1 69 4 72423076 72423095 GCTTTGGCAGTACATATCCT 58 72423126 72423145 GTAATACTTGCAAAGGGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 1 1 1 60 2 257462533 257462553 GAACTACCTTATTCTGCACCA 58 257462575 257462596 GTGATGCTAGTGTCTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058116.1 ENSRNOG00000004906 ENSRNOT00000006506 3 1 1 60 7 100701539 100701557 AAAGGAAGTGCTGAATGGT 57 100701580 100701599 TTGGTACACTAAAGCAGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370,ENSRNOT00000090367 1 2 2 80 2 257514512 257537514 GAATGACACTGACAAAGACAC 58 257514452 257514470 TCAATGTTCGCTGTGTCTG 59 Novel Rattus norvegicus 81 AC106932.1 ENSRNOG00000029083 ENSRNOT00000052241 3 1 1 60 4 152544379 152544397 CATCGAGAGGAGAAACCAC 58 152544419 152544439 CATAGTCCTTAACCACTACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054473.1 ENSRNOG00000040443 ENSRNOT00000062196 3 1 1 65 3 155351398 155351419 CTAGACATTTGACCTGTCTGTC 59 155351445 155351463 GACAGACAGACCGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058078 ENSRNOT00000090487 2 1 1 60 13 105109974 105109995 CCAATTAAACCAGTCAGGTTCC 60 105110016 105110034 CTGTTTATGGCCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.2 ENSRNOG00000054681 ENSRNOT00000091830 3 1 1 82 17 89773062 89775070 GACTCACAGAGGAGAAATTCTC 58 89773001 89773022 GCACCTTGTTGAAGAATAAGGT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057006 ENSRNOT00000081414 1 1 1 60 13 34536477 34536496 AGAACTTCAAGACACTGAGG 57 34536436 34536456 GGGAGATCTTTCCATCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059797 ENSRNOT00000087663 2 1 1 60 13 80950666 80950686 CCTAGAGTAATTGCAGGTGTG 59 80950626 80950644 TCTTCTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095959.1 ENSRNOG00000058957 ENSRNOT00000079940 1 1 1 60 3 78134744 78134765 CCTGGCTTTCTTGTCTTTACTG 60 78134705 78134724 AATCATCTTGGGTGTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054248 ENSRNOT00000089641 2 1 1 60 20 20175368 20175389 TTCATAGCTTCAGCTATGACAG 58 20175329 20175347 TGTATAACCCAGGAGCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.1 ENSRNOG00000051739 ENSRNOT00000082031 1 1 1 80 4 102489953 102490089 TCTGGACATCAGGTATACAGTG 59 102490128 102490148 AAACACTTTCTCCAGGAGAGG 60 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000057544 ENSRNOT00000082436 2 1 1 60 13 9405629 9405648 CTTTGAACCTTTCACAGTGC 58 9405671 9405689 AGGCCATACAATGGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000061901 ENSRNOT00000086861 1 1 1 60 3 146447901 146447922 TAAAGCAGGATTTCGCTAACAC 59 146447942 146447961 ATCACTACCGAACTCCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052760 ENSRNOT00000085030 1 1 1 60 20 32094678 32094701 TAATATCTGATCGTCCTCTATCCG 59 32094718 32094738 ACTCCTAGTTCCAAAGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072283.2 ENSRNOG00000059673 ENSRNOT00000081208 1 1 1 64 12 24744876 24744894 CAAGGAAACATGACCGCTG 60 24744826 24744845 TGGCTCTTTGTGTTAATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA40 ENSRNOG00000058161 ENSRNOT00000080708 3 1 1 66 3 31204409 31204427 TTTGTTCAAAGTGTGGGCA 58 31204457 31204475 GTTGTGGATGGCAAATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059285 ENSRNOT00000085955 3 1 1 62 14 23935956 23935974 ACCACGATTACAACGTTGG 59 23935912 23935930 TCATTGTACCTGGTGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022014.1 ENSRNOG00000043772 ENSRNOT00000069039 1 1 1 67 13 102731776 102731794 TAAAGGCTGGACCTAGACG 59 102731727 102731746 GAGTTAGACGGTGGTTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020711.1 ENSRNOG00000050665 ENSRNOT00000075571 3 1 1 60 13 36335086 36335104 TCCTTTCTTCTTTGCCTGC 58 36335044 36335063 GGAAGTCCAAGGATCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057954 ENSRNOT00000082134 2 1 1 60 15 1315045 1315066 TGATTAAGTGAATCTGGCTGGT 60 1315006 1315024 GCACATGGAGTAGTGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055703 ENSRNOT00000083760 3 1 1 69 4 14815836 14815854 GGGTGTTGTGTCACATGTG 59 14815785 14815809 CAGAACACTGAGTTTAGACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057373 ENSRNOT00000078763 1 1 1 60 13 32174747 32174770 TAGTCAAGGGTAGATGAATAGCTG 60 32174787 32174807 CCTTGAGAGTTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000059422 ENSRNOT00000077983 2 1 1 60 3 154847965 154847983 AAAGTGATCTTGGCTGCCT 60 154847923 154847941 TCTTTCGGCATGATTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055133 ENSRNOT00000090864 3 1 1 60 1 254313723 254313743 GCTGTGTCACATGTACATCAG 59 254313683 254313707 AATAGACTGTAGACCTAGTATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000052856 ENSRNOT00000091639 1 1 1 60 10 74302009 74302030 AGTATCTTTCGGCTGTAGAAGG 60 74301970 74301988 CATGCTGTCAGAGACCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.1 ENSRNOG00000050758 ENSRNOT00000072193 2 1 1 60 1 83436575 83436594 ATATCCACAGAACATGACCC 57 83436534 83436552 AAAGCCCATTCAGCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000051561 ENSRNOT00000085904 2 1 1 60 1 200156826 200156844 TCAGTTCAGGGCAATTTCC 58 200156784 200156803 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 1 1 1 60 3 79151539 79151559 GGATTGTGATGGCCAACAG 59 79151497 79151516 GAGGACACCAAGATGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054779 ENSRNOT00000083598 3 1 1 60 10 38811711 38811729 ATGTATGTCCCTTGCCCAC 60 38811669 38811689 TTATCTGGAGGTTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047580.1 ENSRNOG00000043726 ENSRNOT00000068993 2 1 1 64 5 38293100 38293118 CAATGTTTGACAGGCCCAG 59 38293142 38293164 GACAGAGTCAAGCACAAATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.4 ENSRNOG00000058237 ENSRNOT00000084501 2 1 1 80 15 29841114 29841352 CTCCAATTAAATTGGGTGAGCA 59 29841055 29841073 AGCTATGGATCCCTCTGGA 59 Novel Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000059509 ENSRNOT00000083292 2 1 1 60 13 78854992 78855011 TAGTTCAGCAGACGTGACTC 60 78855031 78855052 CAGATACATCAGATAGGAGCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060131 ENSRNOT00000087108 2 1 1 60 20 9465065 9465089 GAAGTTAGAACGATACAGAGATCAC 59 9465029 9465048 CTTGAATTTGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.1 ENSRNOG00000054109 ENSRNOT00000077156 2 1 1 108 11 87118388 87118408 CTCCAGACGGTGAGATCTC 59 87118298 87118319 ACACAGCAATTTAGACTAAGGG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000052133 ENSRNOT00000091631 3 1 1 74 13 68441069 68441087 AATGAGGTTTATCCGAGGC 57 68441013 68441032 GACTGCTTCAAAGATACACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060474 ENSRNOT00000091544 1 1 1 60 10 72243991 72244013 GGAACGATACAGAGAAGATTAGC 59 72243953 72243971 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061558 ENSRNOT00000086826 2 1 1 60 3 93005645 93005666 ATACAGAGAAGATTAACACGGC 58 93005606 93005625 AGAAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051595 ENSRNOT00000091617 1 1 1 60 15 36604889 36604907 ACTCACATTGGAACGACAC 58 36604930 36604949 GATGTGCATGTTATCCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058936.1 ENSRNOG00000052450 ENSRNOT00000089690 1 1 1 111 7 144725349 144725369 CCAGAATTCAGAGCTCTATCC 58 144725446 144725464 CTACAGAGCATCGGAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC136025.2 ENSRNOG00000061055 ENSRNOT00000083834 2 1 1 80 7 59462495 59462513 ATTTCCGAAAGCTGTGAGC 59 59463421 59463442 CACTGGCTTGTTTGTTGTG 58 Novel Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 3 1 1 96 3 145831638 145831657 CTTCCATTTGCGGAACGAG 60 145831717 145831735 TTCACAGACCATCATCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0713.4 ENSRNOG00000051298 ENSRNOT00000076301 2 1 1 60 X 70423022 70423042 TTCTCCAGACAATACTTGCAC 58 70422982 70423004 GTATAGAGGTCAGACAGAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD74 ENSRNOG00000054347 ENSRNOT00000088715 3 1 1 60 13 78852742 78852762 TGACTCTTGCAATGATGAAGG 59 78852781 78852802 TGGTATTCATCAACAAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047036.1 ENSRNOG00000061874 ENSRNOT00000091550 2 1 1 105 5 16464402 16464420 CACACTCAAGCACAAACAC 58 16464488 16464507 TATGTTTGCGTGAGTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052042 ENSRNOT00000084405 3 1 1 60 3 103948402 103948421 GCTGTGACATCTGTCATCTC 59 103948442 103948462 TAGAAGACATCTGTCTAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000060097 ENSRNOT00000091851 2 1 1 61 18 70372892 70372910 CCTTGGCCTTGACTTTGTG 59 70372933 70372953 AGGACACAGTACTTTCAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000056426 ENSRNOT00000091170 3 1 1 60 20 45302003 45302022 AGCAGGTAGCAATTACAGTG 58 45301962 45301982 TCTTTCAGCAGGATTAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097890.3 ENSRNOG00000059818 ENSRNOT00000085800 2 1 1 70 18 51300151 51300170 TGAGATCCATCTGTAAGGCA 58 51300100 51300118 ATGTTACCTCCCACAATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017936.1 ENSRNOG00000050460 ENSRNOT00000091428 3 1 1 80 15 34896616 34896649 CTGGAGTGACAGAACGAGG 60 34896554 34896573 AAGCTATCGTCATAACGCCT 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000053776 ENSRNOT00000084844 3 1 1 60 19 1480533 1480555 CAATACATCCTGATCTCAGAAGC 59 1480495 1480517 TTTCCCATCCAAGTACTATCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045175 ENSRNOT00000070442 2 1 1 60 10 8469923 8469942 AACCACCCTAAATGTACTGC 58 8469965 8469983 TACTAACTAGGACCCACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052058 ENSRNOT00000082842 1 1 1 60 7 12619434 12619452 GAGAAGATTAGCATGGCCC 58 12619392 12619410 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021706.1 ENSRNOG00000049253 ENSRNOT00000074216 1 1 1 60 13 86733172 86733190 GAACAGGTCACCTGATGGT 59 86733212 86733232 CAACTCATAAAGGCTGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061581 ENSRNOT00000090289 2 1 1 60 X 144720307 144720325 GATTCGGTTGATCTGGCTG 59 144720265 144720283 ATGAAATGGTGAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.3 ENSRNOG00000051073 ENSRNOT00000076494 1 1 1 80 X 115601046 115606868 CAAGATGGGTAATGTCCTGAG 58 115600986 115601008 GAGGACATCAGATCTCATTACAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060797 ENSRNOT00000083051 2 1 1 60 18 34023737 34023760 GATACAGAGAAGATTAGCATGGTC 59 34023700 34023719 CAAAGGACACTTACTTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056999 ENSRNOT00000085163 1 1 1 60 5 145352649 145352668 AAGACTGAAACAGCACAGAG 58 145352608 145352627 TCATGATTTGCAGGTCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034421 ENSRNOT00000052544 3 1 1 60 7 56875559 56875580 CACCTGATCTTGTCTAATCTCG 59 56875520 56875538 CCCATCCAAGTCCTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018048.2 ENSRNOG00000059279 ENSRNOT00000085358 1 1 1 80 15 37276453 37276472 TACAGGATCTTGGGACACAG 59 37268177 37268458 TGAAGCAAAGGGATTCCCA 59 Novel Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 2 1 1 60 4 155169757 155169780 CAAGACTCCCATTATGATCCAG 58 155169801 155169819 ATGAGTTCTCTGCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053782 ENSRNOT00000088817 3 1 1 60 5 106424779 106424797 GCTCACTGTAAGGGATGTG 58 106424819 106424839 AGCATGTCAAGCATGTATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044429 ENSRNOT00000069696 2 1 1 60 15 46039549 46039570 AGCCATATTACTCCCAAATGTG 59 46039590 46039609 GCCTGACCTGTTTAGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037054.1 ENSRNOG00000003789 ENSRNOT00000005028 3 1 1 69 X 10932270 10932290 AGAAGTCAAGGGATGTAACTG 58 10932220 10932243 GGCTTATCCTCATACATCTTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000060150 ENSRNOT00000091289 1 1 1 61 15 83765903 83765921 CTTATCCGTTGCACTCCAG 58 83765860 83765879 GCTGAATTTCCCATCATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064304.1 ENSRNOG00000046049 ENSRNOT00000072488 2 1 1 80 6 74913282 74913300 TGTGGTGTCAAACACTCCA 59 74913344 74913364 TCACATCTGGGATGATGCT 59 Novel Rattus norvegicus 81 AABR07053713.1 ENSRNOG00000056903 ENSRNOT00000089018 3 1 1 111 3 121884875 121884896 GGAAATGAACAAAGCAAGAGG 58 121884968 121884987 CAGAGGGAACCTTAAAGCTG 58 Novel Rattus norvegicus 81 AABR07030184.1 ENSRNOG00000057449 ENSRNOT00000077390 2 1 1 93 10 74762859 74762898 GGTATACAGAGGTTTCAGTGTG 59 74762952 74762970 AAAGATCACAGACCTTGGC 58 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054382 ENSRNOT00000090906 2 1 1 84 X 49814544 49814562 AAGAGTGGCTTCTGGAGTG 59 49814607 49814628 TTTCCATTTCTTTCCTAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 3 1 1 66 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649764 43649783 GTCTGCAGCCAAACTTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.2 ENSRNOG00000055475 ENSRNOT00000083025 2 1 1 80 6 139531566 139531586 CCTATACCTGCAAATGGACAC 59 139531625 139531689 TGGTCACTAGTATCTGTGTCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061787 ENSRNOT00000078826 2 1 1 70 X 113757302 113757320 TACAGGTGTGGCTACTGTG 59 113757250 113757270 TGAGCATAGAAATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh5 ENSRNOG00000053850 ENSRNOT00000081756 1 1 1 80 7 3340896 3340915 TGCTGGATATCACTGATCCC 59 3340708 3340853 CAAAGAGCCCAGTTTCTCC 59 Novel Rattus norvegicus 81 AABR07054562.2 ENSRNOG00000054123 ENSRNOT00000084056 2 1 1 60 3 160572499 160572518 ATACTGTCTTGGTCTTTGGC 58 160572541 160572559 GGTAAGGAAATCAAGGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055262 ENSRNOT00000080640 1 1 1 61 7 60550071 60550091 AGACACGATACAGAGATAGCA 58 60550030 60550048 AACGTTTCACGGATTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679803 ENSRNOG00000051949 ENSRNOT00000082081 3 1 1 60 5 137635497 137635516 ATCTGTGGTTTCCTTTCCTC 58 137635456 137635476 CACAATATGGCAGACTCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056510 ENSRNOT00000078301 2 1 1 63 18 3530016 3530035 TATGGCTTCCATGTCATGTG 58 3529972 3529991 GAGTGTACACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054178 ENSRNOT00000081350 2 1 1 70 3 70877750 70877769 TTAGGTTTGGCTGCTTTGTC 59 70877797 70877820 CACTTAATGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060856 ENSRNOT00000088961 2 1 1 60 X 103063856 103063878 TAGGTATCAGAGAAGAGGAAGAC 58 103063818 103063839 TCAGATGTTCATGTATCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052961 ENSRNOT00000085433 1 1 1 60 X 44899665 44899686 GGAGATACTATGCTCATGAAGG 58 44899704 44899725 TATACAGAGTGCAATGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059355 ENSRNOT00000079723 1 1 1 60 X 16254135 16254153 GAGAAGATTAGCATGGCCC 58 16254177 16254195 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058936 ENSRNOT00000091254 1 1 1 60 18 65612044 65612065 AGTCAGTTACAGATTGAAGTCC 58 65612005 65612024 TTGTCAAGTGCAGTAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042733.2 ENSRNOG00000060024 ENSRNOT00000092016 1 1 1 82 19 6026880 6028624 TTAAGAAGGTACTGCCGTG 57 6026816 6026834 CATCTAAGAGGACTGGTGC 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060935 ENSRNOT00000086606 3 1 1 60 15 86819362 86819380 GAGAGGCTATGCCTATGCT 59 86819320 86819344 TTAGGCTACTACTCATTTAGGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029111.1 ENSRNOG00000046888 ENSRNOT00000074560 3 1 1 60 10 7696254 7696272 TGCAGCTCTGACTATCTCG 59 7696295 7696314 TCTCTGTGAATTTGAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055806 ENSRNOT00000087435 2 1 1 60 6 980373 980391 GCGTATGCATATCTTGCCT 58 980414 980433 CTCCAAGGGTATTTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017786.1 ENSRNOG00000055146 ENSRNOT00000086675 2 1 1 60 15 31072368 31072386 TGGTTCTTGTCACAGAGGG 59 31072407 31072428 GAATAAGTAGTCTGGTAGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055040 ENSRNOT00000082941 1 1 1 60 4 104836179 104836197 GGATCAGTAGGTGGCAGAG 59 104836219 104836239 TTCACAGGTTAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0427.1 ENSRNOG00000057689 ENSRNOT00000084857 1 1 1 60 1 41325006 41325025 AAGTTCAGGGAAGATAGCGG 60 41325045 41325066 GGCACTTATAGGAACATCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 2 2 2 60 6 143194561 143194581 CCAAGCATTCCTCAAGATCAC 59 143194521 143194540 AGCACAGTAGTATGTGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051961 ENSRNOT00000090690 1 1 1 60 4 165500345 165500363 GCATCAGTATGTGGCAGAG 58 165500303 165500321 GTCGTGGGTGAGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000054762 ENSRNOT00000078371 3 1 1 60 X 154716674 154716694 AAGTAGAAGCTCTTAAGGGCA 59 154716716 154716734 GAGTGACTGACATCCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058540 ENSRNOT00000089909 2 1 1 61 X 71048340 71048364 GCTCAGCACTGACTATATTAATGTC 60 71048303 71048327 TTTATAATACCACACCTAGGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562948 ENSRNOG00000013975 ENSRNOT00000018934 3 1 1 80 1 48025022 48025040 AAATCAACGAGGCCTATGC 58 48025083 48025421 CATCGATGTTCACCTTCTCG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056912 ENSRNOT00000091181 2 1 1 60 15 35396894 35396914 CACATGTACATCAGTAGGTGG 58 35396936 35396954 GTCAGAACAGTGAGTGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055034 ENSRNOT00000084231 3 1 1 60 4 103410305 103410323 CAGTGCTGTTTCACATGTG 58 103410263 103410284 CTGGGTAGACATAGTGTATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000055553 ENSRNOT00000080370 2 1 1 60 15 57894100 57894119 CTGCATCCACTGATAGACCT 59 57894142 57894160 GCATCCTAGTGCAAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Stil ENSRNOG00000057760 ENSRNOT00000081075 1 1 1 80 5 133822713 133823437 CCATTAGTGGGAATCTGGC 58 133823479 133823499 GAACATGTATCTCAAGCAGCA 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000061642 ENSRNOT00000092004 2 1 1 61 20 9904345 9904363 AGAGACTTTGACAGCCCAG 59 9904302 9904322 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006333.1 ENSRNOG00000050414 ENSRNOT00000074256 3 1 1 80 1 229206225 229206249 CCTATGGTACAAGTTGATAAGGGA 60 229206168 229206191 CTCAGGAATTTCTCTGAGAATCAC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055173 ENSRNOT00000089437 3 1 1 60 15 35649501 35649522 CAGTCAAGGGTATATCAGTAGC 58 35649462 35649480 CCTTGAGAGCTTGTTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061838 ENSRNOT00000085717 2 1 1 68 15 14527532 14527550 CATATGGCTGCTGTGTCAC 59 14527482 14527503 GCTTAGATGTAACCTTTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.2 ENSRNOG00000057563 ENSRNOT00000090911 1 1 1 110 1 92090532 92090551 GAAAGTGGCAAATGGGAAGG 60 92090440 92090459 ATGAAGCCCATTCCCACTC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055587 ENSRNOT00000090311 3 1 1 60 15 7954190 7954208 CATCAATGTGGTGACCTCC 58 7954232 7954250 CCAGTTCACCCTCCTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054752 ENSRNOT00000084786 1 1 1 60 15 26297803 26297823 TCAAGGGTATACGAGTAGCTG 59 26297843 26297863 TGGAAATGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056822 ENSRNOT00000086741 3 1 1 62 5 39954117 39954135 TCAGAAGTGGGTTGGTAGG 59 39954073 39954094 AGTCAGAACACTGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.1 ENSRNOG00000052708 ENSRNOT00000090145 3 1 1 69 7 143224893 143224911 CCTCATACTGGGCCTTGAC 60 143224944 143224962 CTCTCCATGGACAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051473 ENSRNOT00000091194 1 1 1 60 20 51711736 51711757 TGTGTCACATGTTGCATAAGTG 60 51711697 51711717 AAACTTAGCGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045387 ENSRNOT00000070654 2 1 1 60 20 7231374 7231395 ACGTGATCTCATATGATCTCAG 57 7231335 7231353 ACCCTCCAAGTATGAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053612 ENSRNOT00000081975 1 1 1 63 20 50371799 50371817 AGTGCCGTGATCTGAAGAG 60 50371839 50371862 CTGTTCAGCCATTTCATATAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041762 ENSRNOT00000063515 2 1 1 60 11 37986772 37986791 TGCTCTGTATACACCTGGTC 59 37986731 37986750 CTACCAAGGTCTGACTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000052300 ENSRNOT00000080046 1 1 1 60 1 101117502 101117521 GTCTTCAGATGTCCTCCAGG 60 101117461 101117479 TTTATGGCATCAGCTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115273.1 ENSRNOG00000048185 ENSRNOT00000070965 1 1 1 67 19 56088735 56088753 CTTCTCTGTGTAGCCCTGG 60 56088784 56088802 ATCTCTGAGTCTGAGGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060871 ENSRNOT00000087024 2 1 1 60 5 5838810 5838831 ATCAGAACGATACAGAGAAGCT 59 5838851 5838870 CATGAACTTGCGTGTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060717 ENSRNOT00000085490 3 1 1 65 18 43591335 43591357 GGGACATACCATAATCAAGAAGG 59 43591292 43591311 CATATCCAGTGTGCAGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 1 1 1 64 18 34788166 34788184 CCTCTTCCTCTTCCTCCTC 58 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107331.1 ENSRNOG00000059331 ENSRNOT00000089760 2 1 1 80 1 170080673 170080696 GAGATTTCACCTCACATGCG 59 170080738 170080757 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA72 ENSRNOG00000058104 ENSRNOT00000080360 2 1 1 60 19 55619176 55619194 GGACAGGCTAAACATCACC 58 55619134 55619153 TAGGGAAAGAACTCGGTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000061393 ENSRNOT00000091576 2 1 1 60 11 84548933 84548951 TTGTAGCCTTTCCTTTCCC 57 84548891 84548910 TTGTTACTTATGCAGCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053417 ENSRNOT00000080256 3 1 1 97 18 80170904 80170923 ATTCCGTGATCCAGAAGGTG 60 80170826 80170845 CGATGTGTTCGGTATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000058685 ENSRNOT00000086075 3 1 1 61 3 138456632 138456651 CTTGGTTCAGAGCAACTTCC 59 138456674 138456693 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035926 ENSRNOT00000054049 1 1 1 60 18 59604051 59604069 CTCAGAAGCTAAGCAGGGT 59 59604009 59604027 GTAGTCACAGGCTGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045322 ENSRNOT00000070589 3 1 1 60 5 59194206 59194224 ATCTCAGAGGCTAAGCAGG 59 59194247 59194266 GAGAATGGCTTATCTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051832 ENSRNOT00000088879 2 1 1 60 19 9718646 9718668 GATGTCTTACTTGTAGCTCAAGG 59 9718688 9718706 GAAGAGCCCAGTTCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052483 ENSRNOT00000077905 1 1 1 60 5 128800433 128800452 GAGCCCTAGATGATCTTGTC 57 128800392 128800411 TTACTCATACACCCTGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055656 ENSRNOT00000087571 3 1 1 60 6 5216256 5216275 CATGTACTGATCAGCAGGTG 59 5216295 5216316 AGGTTAGAACACTGAGCATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000052780 ENSRNOT00000088231 1 1 1 60 20 41767471 41767492 TAACCAATTCAGGCTATTTGGC 59 41767511 41767531 GTGGTATAGTCCACTGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026797.1 ENSRNOG00000018554 ENSRNOT00000025031 1 1 1 60 17 1909861 1909879 CATCGTGATTCCTGTCCCT 59 1909819 1909840 TCCCATTGTTTCCAAGATTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051898 ENSRNOT00000085878 3 1 1 60 11 50431624 50431642 CCACTTCTCCTAGCAGCAG 60 50431582 50431602 CATAGGTCAGAACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056590 ENSRNOT00000089710 3 1 1 60 7 80951073 80951093 TTTATGGAATCCATGGTCCCT 59 80951113 80951133 AGAAAGTCTGATTAGGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107096.1 ENSRNOG00000055642 ENSRNOT00000086087 3 1 1 61 7 117326392 117326410 CCTCTCAATCTGATGCCGA 59 117325584 117325603 GAAGAGATCAGGTGCAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004134.1 ENSRNOG00000056928 ENSRNOT00000079160 2 1 1 80 1 126633126 126633152 AATTAGAACAAAGCCAGTGGTC 59 126633067 126633087 ACATAACCGACTCACTACAGG 59 Novel Rattus norvegicus 81 AABR07051548.2 ENSRNOG00000057376 ENSRNOT00000077741 1 1 1 90 3 16753742 16753966 TGGGTATATGGTACCTGTGG 58 16754016 16754037 TGCAGTTTATAGTGACCATCTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060993 ENSRNOT00000091180 3 1 1 60 7 6059086 6059104 TGTGTCACATGTGCATCAG 59 6059123 6059146 TACACTGAGTGTAGAAGTAACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360355 ENSRNOG00000051726 ENSRNOT00000080172 1 1 1 81 X 155417338 155418163 CAGGAATTACTATCAAGACAGACAC 59 155418199 155418220 AATTTCCTCTTGTACTTGCTGG 59 Novel Rattus norvegicus 81 AABR07034498.1 ENSRNOG00000052877 ENSRNOT00000087747 3 1 1 60 11 73930941 73930959 GCTTCCCAAGCTCTATGTC 58 73930982 73931001 GACCTTGCTATGAATGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052321 ENSRNOT00000078307 1 1 1 60 11 55842818 55842836 ATCCGCGTTCATTCTTCTG 58 55842776 55842795 GTTCTTCTGTTGCAGAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059060 ENSRNOT00000079289 3 1 1 60 11 80898279 80898299 AAAGAGGAGTGAGGCTATGTC 59 80898317 80898339 CTGATAATCCAGATGTCTACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053493 ENSRNOT00000088359 3 1 1 60 17 18319726 18319748 GATACAGAGAAGATTAGCATGGC 59 18319768 18319786 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052,ENSRNOT00000088581 2 2 6 80 10 74882926 74882947 ATCTATCAGTTCCCAGATTGTG 58 74882988 74883173 TGGGATGCTTTCCTTTAGG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000060092 ENSRNOT00000086170 3 1 1 73 9 107804416 107804435 TGATCTGGCTGTGAAATCTC 58 107804362 107804381 AAATCCACCAAGTCAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051814 ENSRNOT00000078607 2 1 1 60 4 84025545 84025563 CACATGTACAGCAGTAGGG 58 84025503 84025523 ATCAGAACACTCAACACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044494 ENSRNOT00000069761 1 1 1 60 17 61415743 61415761 ATCTCGGAAGTGAAGCAGG 60 61415701 61415719 TGTGGCCTTAGGAAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059272.1 ENSRNOG00000049486 ENSRNOT00000075112 3 1 1 62 4 13255447 13255465 TCCTCCTCTTCCTCTTCCA 59 13255488 13255509 GCATGAAATAGAACACAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058220 ENSRNOT00000091546 3 1 1 60 4 21904768 21904792 ACAGTAAAGAGATTAGGATAGTCCC 59 21904808 21904828 GGAATGCTTCATGAGTTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054642 ENSRNOT00000078054 1 1 1 60 17 81859302 81859326 GAATCAATCTATGGAGCTATATGGG 59 81859343 81859362 CACTTCCTAGGGTCCATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010705.1 ENSRNOG00000032715 ENSRNOT00000046641 1 1 1 60 2 148262915 148262933 GCCACTCAAGAAACGAACC 60 148262956 148262975 GGCAATTCCCACACTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065532.1 ENSRNOG00000041530 ENSRNOT00000063283 2 1 1 63 6 133861040 133861059 TATTTGAAGGTGCGGTTGAC 59 133861083 133861103 GTAGACCATGTGTCCTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055906 ENSRNOT00000091802 3 1 1 60 4 93981215 93981236 GCCATCTACAGGTATAGAAGGT 59 93981176 93981194 ATCTGCCACCTAATGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061717 ENSRNOT00000090020 1 1 1 60 7 23826039 23826062 GGAACACTACAGATATTAGCATGG 59 23826080 23826099 ATGCTTCACAAATTTGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028336.1 ENSRNOG00000057298 ENSRNOT00000077094 3 1 1 60 17 65937660 65937681 AGTACACCATAGCTGTCTTCAG 60 65937621 65937640 GACTTCTGTAATGGGATCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058014 ENSRNOT00000089239 1 1 1 60 4 158424248 158424269 CTCAAATTGGAATGACACAGAG 58 158424290 158424308 ATCTGCGTGTCATCTTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012133.1 ENSRNOG00000047188 ENSRNOT00000073126 3 1 1 60 2 186932823 186932845 GGAATGAAGAAATTGTCCTCCAG 60 186932785 186932804 CCATGGGTAGCAATCAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041728 ENSRNOT00000063481 3 1 1 60 7 15055543 15055565 CTGAATGTACCCAATCTCATCTG 59 15055505 15055524 CTCCAAGTACTAACCAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000028767 ENSRNOT00000033187 1 1 1 80 1 62191036 62191224 TACAGCATCCACATAGGAGAG 59 62190976 62190996 GACTGTCAGATGGTATTTCCG 59 Novel Rattus norvegicus 81 AABR07013583.1 ENSRNOG00000051598 ENSRNOT00000072902 1 1 1 80 2 244930751 244930776 GACTCAACTGTCAAAGATGGA 58 244930691 244930711 TGATCTTCTCATTGAGTCCTG 57 Novel Rattus norvegicus 81 Mrps6 ENSRNOG00000059381 ENSRNOT00000087452 2 1 1 89 11 32253015 32263520 CGAGGAGGGTATTTCTTGGT 59 32263572 32263590 AACCACATCAGTGTCTCGT 59 Novel Rattus norvegicus 81 AABR07033579.1 ENSRNOG00000058863 ENSRNOT00000081347 2 1 1 106 11 28810813 28810831 GGATTCGAATCACGCTCAC 59 28810549 28810745 CTTCAACCTCCACTCTTTCAG 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076566 1 1 3 68 20 44606481 44606499 CTACTGCTGTTAGTGCCAC 58 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066818.1 ENSRNOG00000049643 ENSRNOT00000074015 3 1 1 66 9 17175048 17175066 TTTCTCTGTGTAGCCCTGG 59 17175000 17175018 TCTCTGAGTTCAAAGCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 2 1 1 60 12 25290825 25290844 CCATACCATACTGGACATGC 58 25290866 25290885 CCATCCAAGTACTAACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051731.1 ENSRNOG00000053899 ENSRNOT00000088492 2 1 1 81 3 20375740 20375891 GCTTACAGGTGGTAAATGTGAC 60 20375929 20375951 GATGGTGACAATTTCTTCCAGAG 60 Novel Rattus norvegicus 81 AABR07062694.1 ENSRNOG00000052732 ENSRNOT00000089136 2 1 1 80 6 3416574 3416597 GAGATTTCACCTCACATGCG 59 3416639 3416658 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07012843.1 ENSRNOG00000056341 ENSRNOT00000090714 1 1 1 67 2 210338336 210338354 GTCGGATTACAGCATTGGG 59 210338282 210338300 CAGTGCCTACATCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055105 ENSRNOT00000087996 2 1 1 67 10 74742649 74742667 CTTATCCATTGCACTCCGG 58 74742698 74742716 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067387.1 ENSRNOG00000058101 ENSRNOT00000087372 1 1 1 60 9 41995381 41995402 ACACATACATAACCACAGACAC 59 41995342 41995363 GATGTGTCTGTATGTGTATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058213 ENSRNOT00000079343 3 1 1 60 8 49369000 49369018 GTAGCATTCCTCTGTGGGA 59 49368958 49368976 ATGTGGCTAAGAAAGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024725.1 ENSRNOG00000051457 ENSRNOT00000077513 2 1 1 80 16 12741159 12741178 CCTTTCTGTCCACATACCGA 60 12737053 12741119 CTGTGAAGTGTGAATACCTCAG 59 Novel Rattus norvegicus 81 AABR07024725.1 ENSRNOG00000051457 ENSRNOT00000077513 3 1 1 80 16 12741160 12741178 CCTTTCTGTCCACATACCG 58 12737053 12741119 CTGTGAAGTGTGAATACCTCAG 59 Novel Rattus norvegicus 81 ENSRNOG00000061764 ENSRNOT00000082700 3 1 1 80 13 92669731 92669751 CGGAGTAGGAATACCTTCCC 59 92669793 92669812 CACATTCCAAGGGAGAAGGA 60 Novel Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 1 1 1 73 X 157458859 157458878 ATTCTTCTTGCAAGGGAGG 57 157458804 157458827 GTAAAGGGATGGATCTCTATAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058406.1 ENSRNOG00000059955 ENSRNOT00000078097 1 1 1 60 7 114690413 114690433 CAAGTTCATCAAGAGGATGGT 58 114690373 114690391 CAGCTCCTCCCACTTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067355.1 ENSRNOG00000057235 ENSRNOT00000086189 2 1 1 60 9 41208191 41208212 TGAAAGCAAGGGTAATTGACTC 59 41208233 41208251 TGGACGTCTAGAACCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042388.1 ENSRNOG00000052411 ENSRNOT00000085391 1 1 1 85 X 154739308 154739328 AGAGGAAGATAGACTGGAGTG 58 154739372 154739397 TCTGTCAACAACATTCCTTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055366 ENSRNOT00000080513 1 1 1 60 1 177432149 177432167 CTTCTGGTGTCACATGTGC 59 177432107 177432125 ACCGAGCATGGACATAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038219.1 ENSRNOG00000052118 ENSRNOT00000084562 3 1 1 60 X 43293886 43293905 GAGTATGGGAAGAGTACGGA 58 43293928 43293946 CAGAATCCCTGAAAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040282.1 ENSRNOG00000061407 ENSRNOT00000089023 1 1 1 60 X 96822559 96822578 GTGGTGTCCAAACTGTACTC 59 96822518 96822536 CTGTCTCTGATCCACTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071935.2 ENSRNOG00000061441 ENSRNOT00000087364 2 1 1 60 X 157200724 157200743 CCACCATCAACAAGAATGCT 59 157200683 157200702 TTCTTTCGGATCATCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053199 ENSRNOT00000090613 1 1 1 60 3 39643933 39643954 ATACAGAGAAGATTAGCATGGC 58 39643894 39643914 GGAACACTTCACGAATTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.1 ENSRNOG00000032424 ENSRNOT00000049362 2 1 1 60 7 29909265 29909283 AGGCTTCCTCCTTTCACAG 59 29909307 29909325 CATGTGACGTTACCACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037436.1 ENSRNOG00000052565 ENSRNOT00000083810 1 1 1 60 X 20734081 20734100 CAGTTTCTCAGTCATCCTCC 58 20734040 20734060 TTGAGTGTCAAGTTACTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044087 ENSRNOT00000069354 1 1 1 60 3 55740493 55740513 GCCATATCATCCTGAACATCC 59 55740535 55740553 CAAGGTTCTCCTGATCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125873.2 ENSRNOG00000060487 ENSRNOT00000077559 2 1 1 60 13 109909851 109909869 TTTGCCATGTCACAGTGAC 59 109909892 109909911 GATCCACATGAAACCTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058998 ENSRNOT00000084716 3 1 1 60 8 1160622 1160640 AATGAGGTTTATCCGAGGC 57 1160580 1160599 ATCACATCATGGTTCCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030729.1 ENSRNOG00000030224 ENSRNOT00000044922 3 1 1 60 10 102289161 102289179 CAGAGCTGAATGGGAACCT 59 102289119 102289139 ACAGATACATTGGGAGTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.1 ENSRNOG00000049620 ENSRNOT00000071360 1 1 1 61 8 116713529 116713548 CTGGCCTTGAACTCATAGAG 58 116713572 116713590 ACGCCTTTAGTCCTAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 2 1 1 82 1 262861667 262861686 CGTCAGTCACTTTACTCCCA 60 262861729 262888062 CCTCTAGTACCTGTTCCTCTG 59 Novel Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 3 1 1 82 1 262861666 262861685 TCGTCAGTCACTTTACTCCC 59 262861727 262888061 CTCTAGTACCTGTTCCTCTGAG 59 Novel Rattus norvegicus 81 AC105804.1 ENSRNOG00000053768 ENSRNOT00000088038 3 1 1 89 12 47277109 47277131 TCATCCCTAATTTGCTACACTG 58 47277182 47277200 CACGTGCAGTTGTAAGCTG 60 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000052041 ENSRNOT00000091302 3 1 1 61 1 94591127 94591149 CAATACAGAGAAGATTGGCATGG 60 94591088 94591106 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053990 ENSRNOT00000087379 1 1 1 60 8 83924694 83924712 GGCTGGTTAGGTGGATCTC 60 83924652 83924670 CATGCAGCTTTAGGAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071243.1 ENSRNOG00000046364 ENSRNOT00000071769 2 1 1 98 8 106582011 106582029 CGAACAACATGAGCCTCTG 59 106581930 106581949 TATCACCCAACCAGACACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052988 ENSRNOT00000092206 2 1 1 60 8 95657769 95657788 AGAGGCTGTGTCTATCTCAG 58 95657728 95657749 TGTTAGGCTACTAATCACTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024682.1 ENSRNOG00000055022 ENSRNOT00000080192 2 1 1 88 16 12123948 12124096 CAGACAAGAGTGAGAATGATTCTG 60 12123883 12123902 TAGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 AABR07070926.1 ENSRNOG00000054875 ENSRNOT00000080817 3 1 1 81 8 92224992 92225015 TCTACAAATCCAGCACTAAGGA 59 92224932 92224953 AGTTTCTTGCTTCTTCTAGGGT 60 Novel Rattus norvegicus 81 AC097023.1 ENSRNOG00000041504 ENSRNOT00000063257 1 1 1 60 8 85987255 85987273 TAGAAGGCAGACAGATCCC 58 85987213 85987233 CCTGGAATTCCCTCTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000058779 ENSRNOT00000079614 3 1 1 66 8 96302132 96302154 ATGATGATCCTATCCCGAATCTG 60 96302088 96302106 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052126 ENSRNOT00000088994 3 1 1 60 8 83860137 83860158 GTCACATGGACATCAATAGGTG 59 83860098 83860119 GTCAGAATGCTAAGCATAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 2 1 1 89 20 47733352 47733371 AACTTAGGGATATCGCTGGT 58 47733281 47733302 GGGCAAGAATACCTACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 3 1 1 80 20 628727 628751 TCTGCTATACCACTTCTACCC 59 628793 628811 CTATGCAGCCCACATAGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024500.1 ENSRNOG00000056629 ENSRNOT00000091719 3 1 1 60 16 2061726 2061747 TACACCTCTAGGATTTGATGAC 57 2061765 2061786 TTCAAACTCTGTGACATCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053318 ENSRNOT00000083640 2 1 1 60 3 58648379 58648401 GTGTCACATGTACATGTAGATGG 59 58648341 58648359 CAGAGCACTGAGCATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.2 ENSRNOG00000055150 ENSRNOT00000078427 3 1 1 87 3 61672755 61672773 GAGGTAGACCTTCCAAGGC 60 61672685 61672706 GAGACAGCATTAGCCAAACAG 60 Novel Rattus norvegicus 81 AC107446.3 ENSRNOG00000058163 ENSRNOT00000073343 2 1 1 61 3 57697537 57697556 TACAAAGCTTCTGTAAGGCA 57 57697582 57697600 TTCCCAATCTGTTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061634 ENSRNOT00000079099 3 1 1 60 16 76183757 76183776 TGTGGGTCAGTAGGTAACAG 59 76183798 76183817 CACAGATCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 2 1 1 67 14 32773505 32773524 TTGCATTTGTATTCTCCGCA 59 32770359 32773475 TCTCTTAACCCATCTGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046745.1 ENSRNOG00000052848 ENSRNOT00000083482 2 1 1 68 5 4548337 4549224 GATGTAAGCTGAAGGCCTC 58 4548287 4548305 AGTCGTTGATTGTAGGCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07072400.2 ENSRNOG00000061611 ENSRNOT00000089173 1 1 1 80 14 43647779 43647797 GGACATGAACTAGCCACAG 58 43646628 43647738 ATACACAGTACACTCATCTCAG 57 Novel Rattus norvegicus 81 AABR07031419.1 ENSRNOG00000058992 ENSRNOT00000077144 3 1 1 82 18 13276140 13276159 ACACTTTGGACAGCATAGAG 58 13276203 13276345 GAAAGAACCCATGGTCTGAG 58 Novel Rattus norvegicus 81 AABR07015399.1 ENSRNOG00000051674 ENSRNOT00000090450 2 1 1 80 14 53798630 53798651 GCTCAGTACATCTTTACTACCA 57 53798692 53806679 ATCACTCTACCTTCCTGGG 58 Novel Rattus norvegicus 81 AABR07029639.1 ENSRNOG00000058124 ENSRNOT00000086993 2 1 1 80 10 42312759 42312779 CCTCACAGAGAATTCACATCC 59 42312819 42312990 CCTTCAAAGTGAACTGTTCCT 59 Novel Rattus norvegicus 81 AABR07000411.1 ENSRNOG00000055789 ENSRNOT00000087070 1 1 1 80 1 12006794 12086536 GCTTCATCAGCTGGAATGAC 59 12086579 12086597 GTTGGCTCATGATCTCAGC 59 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 2 2 2 80 14 61651301 61660208 CATTCTTAAGTATATGACTGACGGG 59 61660244 61660264 ATTATCACACCATAACGCTCC 58 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 3 2 2 80 14 61651244 61651262 GTTAGGCCAGGAAGTTGGA 59 61651300 61660207 CCGTCAGTCATATACTTAAGAATGG 59 Novel Rattus norvegicus 81 AABR07047194.1 ENSRNOG00000058576 ENSRNOT00000081862 2 1 1 80 5 23391927 23391946 GTCGAAACAGTCTGTTGCAG 60 23391989 23392610 TGACCAGACGTCTTTGACC 60 Novel Rattus norvegicus 81 AABR07015647.2 ENSRNOG00000061727 ENSRNOT00000078124 3 1 1 89 14 68659614 68662053 GAAACACCAGGAAGGACAG 58 68659543 68659561 TTGTAAACTGCCAGGAAGC 58 Novel Rattus norvegicus 81 AABR07015761.1 ENSRNOG00000060498 ENSRNOT00000078461 3 1 1 80 14 74325472 74329469 TGCTGAGAAACAGAGAAGAGG 60 74329509 74329529 ATCAGTGCTGTGACTATGAGG 60 Novel Rattus norvegicus 81 AABR07030257.1 ENSRNOG00000052162 ENSRNOT00000077728 1 1 1 85 10 78220602 78223572 GGACTACTCTGCTGGATGG 59 78223621 78223639 TCACAGGGCTACAGAAGTC 59 Novel Rattus norvegicus 81 AC136053.1 ENSRNOG00000057719 ENSRNOT00000081461 1 1 1 80 1 15247463 15247485 GTCTTTGGACCTCTCATTATCAG 59 15247525 15255751 CAGCAACAACCTGAAACCA 59 Novel Rattus norvegicus 81 AABR07000523.1 ENSRNOG00000053617 ENSRNOT00000081799 3 1 1 60 1 16462967 16462988 CATGATCCTTCCTTACTTCCTC 58 16463008 16463027 AGCCCTTAGACATCACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 1 1 1 60 10 79210687 79210705 TCAACTTTGACGTTTGCCA 59 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000533.1 ENSRNOG00000052464 ENSRNOT00000084087 2 1 1 80 1 16965440 16965458 AGCAACCCTTCTAATGTGG 57 16961071 16965396 GAATACCAGGACCTGTCAC 57 Novel Rattus norvegicus 81 AABR07048075.2 ENSRNOG00000053369 ENSRNOT00000085035 1 1 1 107 5 60521828 60521846 GGCTTCTGAAGCTGTACCT 59 60524217 60524235 GTTTCCTCTACCTTCCCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC095078.3 ENSRNOG00000061792 ENSRNOT00000080749 3 1 1 66 4 117552448 117552466 CTGGACTCCTGTCAAGGAC 59 117550953 117550971 AAACCGGAGGACAGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048199.1 ENSRNOG00000057026 ENSRNOT00000089749 3 1 1 80 5 66945034 66945052 CATTCAGGCTCACTACCAG 58 66943706 66944993 TATCATTCTAAACCACCCTTCC 58 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000084174 2 1 2 80 4 117655198 117663063 CGTTGAAGACCTGAATCCA 58 117655136 117655156 AAAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 1 3 3 80 1 19639619 19639638 AGTGAAGTCCCAGATGACTC 59 19639394 19639576 GCCTACTGGAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07048342.1 ENSRNOG00000051572 ENSRNOT00000083131 3 1 1 93 5 73803845 73805013 TAGAACTCTGGCAGGAAAGC 60 73803771 73803790 ATCTAGGGAAGAGCTCACCT 60 Novel Rattus norvegicus 81 AABR07016572.1 ENSRNOG00000061005 ENSRNOT00000091905 2 1 1 87 14 104709195 104709214 GACACTTGGTGTCACAAACC 60 104709264 104714090 ATCATCACAGGACCTGCAC 60 Novel Rattus norvegicus 81 AABR07016578.2 ENSRNOG00000056722 ENSRNOT00000079867 2 1 1 85 14 105084285 105084810 AACTCTGCTCTGAAGACCC 59 105084857 105084877 CAAATCAGTCGTGAGATTCCA 59 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 3 1 1 61 4 132914655 132918151 TTCTCACTCAGGCTTCTGG 59 132918176 132918194 CTGTGATCTCATGTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016589.1 ENSRNOG00000052148 ENSRNOT00000083675 2 1 1 86 14 105480738 105480758 AGCCAACAGAACTTAAAGGTG 59 105480803 105484644 GGCAAATTCAAGAACCTTATGC 59 Novel Rattus norvegicus 81 AABR07048900.1 ENSRNOG00000061469 ENSRNOT00000078686 1 1 1 103 5 96379013 96379031 TCCTACTGAAGCTGCAGAG 59 96393167 96393186 TTGTTCATTCAGTTGACCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048939.1 ENSRNOG00000056861 ENSRNOT00000089682 3 1 1 85 5 98102229 98102247 GTGAAATGCCTGGAAACCG 60 98114132 98114150 CATCATGATTCCAAGCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.1 ENSRNOG00000051841 ENSRNOT00000082370 1 1 1 80 10 93242356 93242374 CTCCTTGTCAAATGCAGCC 60 93251184 93251204 CCTACGGTTTCCAGATATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 1 1 1 60 1 30666711 30666734 GGATTCTATTTCTACACAGTCCAC 59 30666188 30666695 TAACCATTCACTTAGTCAAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 2 1 1 62 4 146294992 146296369 ACCCATGAAGGAAGGACTG 59 146294948 146294966 TGACTGAATTCAGCAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030642.1 ENSRNOG00000054591 ENSRNOT00000079534 3 1 1 81 10 97347949 97349585 AGAAGAGATGGAAGGCTGG 59 97349627 97349648 TTTCCACTGTCATCTACATCCA 59 Novel Rattus norvegicus 81 AABR07001006.1 ENSRNOG00000060323 ENSRNOT00000085639 1 1 1 82 1 32661258 32661276 CCACAGCAGCTCTACAGAG 60 32661322 32662150 ATGTTCCAGGAAACCTGCA 60 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000086379 1 1 2 81 10 99706395 99706413 ATCTGTGAACACAAGGCCT 59 99691230 99706352 TGGAAATACCTTGCAGATGTG 59 Novel Rattus norvegicus 81 AABR07049156.1 ENSRNOG00000051401 ENSRNOT00000079787 1 1 1 60 5 107945180 107945200 CTCACTTTCTCTGTCCCTCTC 60 107945217 107945240 ATACAGTCTTCTATGTGTAGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115420.3 ENSRNOG00000056433 ENSRNOT00000074731 3 1 1 80 4 157457990 157458008 AGGCTTTCTCAAACTCGTC 58 157458052 157460157 ACAAGTTACTGCCTTCTCC 57 Novel Rattus norvegicus 81 AABR07016947.1 ENSRNOG00000053368 ENSRNOT00000090163 1 1 1 80 15 5372444 5372464 ATAAACACAGTTCCTGGACAC 58 5367274 5372403 TCCGAATAAACCCTAAGCAG 57 Novel Rattus norvegicus 81 AABR07001018.4 ENSRNOG00000056842 ENSRNOT00000079972 1 1 1 82 1 33805037 33810665 GAGAAGTGTGAAGGTAAGACAC 59 33810708 33810726 TCCTTCATGGGACCATCTG 59 Novel Rattus norvegicus 81 AABR07049353.2 ENSRNOG00000059390 ENSRNOT00000085331 2 1 1 80 5 118187843 118187862 AGGAACCAAGGATCAGACTC 59 118187903 118212943 ATTTGATGCTCATCTGGACTG 59 Novel Rattus norvegicus 81 AABR07017113.1 ENSRNOG00000053511 ENSRNOT00000090127 2 1 1 74 15 11913327 11913345 CTGCCTCTGCAAGTTTCTC 59 11939495 11939513 AATTCTGTGATCTTCGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017159.2 ENSRNOG00000061047 ENSRNOT00000082478 1 1 1 80 15 13968376 13971819 AACACTGCTAATGGAGACAC 58 13971862 13971880 CCTGTTTCTGAGGGAAGTC 58 Novel Rattus norvegicus 81 AABR07062069.1 ENSRNOG00000059103 ENSRNOT00000077879 1 1 1 75 4 160419541 160419559 ATTCTGCAGGGATAGCCTG 59 160421875 160421893 AGATGACCTCACTGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030793.1 ENSRNOG00000059335 ENSRNOT00000081753 2 1 1 60 10 104841905 104841923 GCTCTGCTCTTCCTCTTCC 60 104839173 104839196 CTGGTCCTATGAGTAAATCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049503.1 ENSRNOG00000059476 ENSRNOT00000087040 2 1 1 80 5 124772451 124772470 AGCTGACTGGAAACTAACAC 58 124771038 124772410 AAATGCTACAGTCATCTCACC 58 Novel Rattus norvegicus 81 AABR07030854.2 ENSRNOG00000051943 ENSRNOT00000082347 1 1 1 84 10 106573962 106573980 AAAGATGGGAGGTAGGGTC 58 106570847 106573914 AAGATCATGCCATTCCTGG 58 Novel Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 2 1 1 63 4 162999666 162999684 GAACAGCTGTACAGAAGCC 59 162999710 163008805 TCTTTGTTTGTCCGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030890.1 ENSRNOG00000053005 ENSRNOT00000078183 1 1 1 84 10 107999834 108000073 GAAGTAGCTCCAGCTGGAC 60 108000121 108000139 CTGCTGACAAACTGTCCAC 59 Novel Rattus norvegicus 81 AABR07062181.2 ENSRNOG00000060668 ENSRNOT00000078976 2 1 1 84 4 163915680 163920548 GCTTCAGAGGACTTAGCCT 59 163915614 163915636 CTATGCCATATCAGATTCCAGAG 58 Novel Rattus norvegicus 81 AABR07030894.1 ENSRNOG00000054934 ENSRNOT00000088954 3 1 1 80 10 108051943 108053063 CTCTCAATCTGGCAAACCTC 59 108051882 108051900 GAGGCATTTGTTCCTGCTG 60 Novel Rattus norvegicus 81 AABR07062298.2 ENSRNOG00000052108 ENSRNOT00000083020 3 1 1 80 4 167558406 167558428 TGGTAATACCTACTCAAGCTTCC 60 167558465 167560780 TCTTATCTAGTAAGTGACCGCC 59 Novel Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 1 1 1 60 11 11653077 11653095 AGGCTGCTGGATTCTACTG 59 11641731 11653053 TATGATTGGCTCGGTAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031590.1 ENSRNOG00000059828 ENSRNOT00000089678 2 1 1 118 18 21163972 21167137 CAATGTGTCACCAGGAGTG 59 21167216 21167237 CGTTGACATAAATGTTGACAGC 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 2 2 3 80 1 47513321 47513706 GTCCACGTTCAGAAGAAGGA 60 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AABR07017872.1 ENSRNOG00000053204 ENSRNOT00000081388 1 1 1 80 15 32099127 32106375 ATACATTATTTCCTGGGAGGTG 58 32106415 32106434 GGAGTCTCCTTCAAAGACAG 58 Novel Rattus norvegicus 81 AABR07031740.1 ENSRNOG00000057082 ENSRNOT00000089581 2 1 1 71 18 31305842 31305860 AAGTCTGAAGAGACCGCAG 59 31296204 31296222 TGGTCTTCTGTTCCCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC097037.3 ENSRNOG00000052966 ENSRNOT00000087313 3 1 1 80 15 32975253 32975683 TTGGAATTTCCTCACTCCTG 58 32975192 32975210 GATACAAGGGAGAACGCAG 58 Novel Rattus norvegicus 81 AABR07049962.1 ENSRNOG00000057617 ENSRNOT00000079472 3 1 1 69 5 146346336 146346354 TAGAAGAACCAGGTGCCAG 59 146348782 146348800 GTCTTCTCCGACAATGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018100.1 ENSRNOG00000052751 ENSRNOT00000085733 3 1 1 88 15 39587381 39587953 AAATGTTGGCAGACTGGTG 59 39588005 39588023 ACCTATGTCTGCAGTGGTC 59 Novel Rattus norvegicus 81 AABR07018119.1 ENSRNOG00000053233 ENSRNOT00000088052 2 1 1 80 15 40797291 40797932 GCATTCCTGGTTTGCATCC 60 40797973 40797994 TTTCAAACATGCAGGATAGACG 59 Novel Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 3 1 1 61 18 50094030 50133445 GTATCCAGAGTCACTCAGAGG 59 50093989 50094009 GCCAGATCTGTCAAAGAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 1 1 2 80 18 50434571 50435147 TTTGCCTAATGCTCCTCCA 59 50434509 50434528 AGTGGAGTCTCAGGAATGTC 59 Novel Rattus norvegicus 81 AC097890.2 ENSRNOG00000052423 ENSRNOT00000082396 3 1 1 87 18 51367626 51368737 CCTATACTGCCAGAGTGCT 59 51367557 51367575 CATAGGACAAATGCCAGCA 58 Novel Rattus norvegicus 81 AABR07063581.1 ENSRNOG00000058114 ENSRNOT00000084534 2 1 1 80 6 36081903 36081921 AGGAGAAGCCTCTCATGTG 59 36079037 36081862 AGGCTCTATCCTCTAAATCAGC 59 Novel Rattus norvegicus 81 AABR07072602.1 ENSRNOG00000052190 ENSRNOT00000087290 3 1 1 81 18 53252758 53263258 TGGACAACCTGTCTGTGAG 59 53252695 53252716 GAATCCATAAACACAAGCACAG 58 Novel Rattus norvegicus 81 AABR07050283.2 ENSRNOG00000061263 ENSRNOT00000082432 2 1 1 61 5 159213622 159213640 CTTCCTTGGTCCTGGTACC 59 159213956 159213975 TTTGATTCGTCGTGGATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 2 1 1 84 5 161085467 161087498 CAGAACAGATGCGTCTTTCC 59 161085402 161085423 AAGTCTGAACTCAGGAATTGAC 58 Novel Rattus norvegicus 81 AABR07063649.3 ENSRNOG00000058529 ENSRNOT00000083922 1 1 1 80 6 39504689 39504707 ACTGAAGCAACTGACCCTC 60 39504750 39515327 TTGCTGATAAGCTTGTGGTG 59 Novel Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 1 1 1 60 6 39679927 39679948 ACTATCCAGCATCTAGAAGAGC 59 39679969 39692702 AATGGCATGCAGTTCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002066.1 ENSRNOG00000051968 ENSRNOT00000079821 2 1 1 92 1 65652793 65652811 GGTTGGTCTCTGGAATTGG 58 65651461 65652740 GGCAGTTCTCACATCTTTAGAG 59 Novel Rattus norvegicus 81 AABR07050482.1 ENSRNOG00000053174 ENSRNOT00000082039 2 1 1 88 5 166799796 166803241 CACGAAGAGATCCATGCCA 60 166803293 166803311 AAATTCTCGGAGGTGCCTC 60 Novel Rattus norvegicus 81 AABR07002493.1 ENSRNOG00000061661 ENSRNOT00000082654 2 1 1 105 1 75636385 75645099 GAGTCCATTTGGCTTGGAG 59 75645168 75645186 CAAATGGAAGACGTCCGAC 59 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 1 1 1 70 18 64303982 64304000 AAAGAAACAGCTACCGGTG 58 64304034 64309479 CTCCATAAAGGTCAGGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051250.2 ENSRNOG00000061542 ENSRNOT00000090507 2 1 1 87 3 3492161 3492179 TTGAGACAGACCACAGCAG 60 3489162 3489180 ATTCTTCTGAGCTCCAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002805.1 ENSRNOG00000056831 ENSRNOT00000078361 1 1 1 110 1 85574476 85574494 AAGTCCATCTGTCCTACCC 58 85567970 85567988 GAAGAGGACCAGACAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063852.1 ENSRNOG00000052265 ENSRNOT00000082698 2 1 1 96 6 52713261 52713284 GAGAAGCTGTATATGTACATCAGG 59 52712885 52712905 TCTTTACTGTTGAGCCCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019085.1 ENSRNOG00000059113 ENSRNOT00000081466 2 1 1 80 15 87409154 87411958 CATTGAAATAGATGCTGGCCT 59 87409094 87409112 TTGACGAGCTGAGTTCCTG 60 Novel Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 2 1 1 80 3 3955902 3956355 ACCAGGACTGAATGCTGAG 59 3956399 3956417 CCTGATTGGACTCAGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 2 1 1 60 18 71990621 72001708 GATCCATTCTCTACCTCGGG 59 72001731 72001749 TTCTGCTTGCAATTCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063873.1 ENSRNOG00000058832 ENSRNOT00000082019 2 1 1 80 6 53276019 53276039 TCACTCACTACTGTATGGCAC 60 53271916 53275980 TTTCGAGAATCATCACCTAGGA 59 Novel Rattus norvegicus 81 AABR07051255.1 ENSRNOG00000058226 ENSRNOT00000088512 2 1 1 81 3 4153825 4154297 CTAATGTGGATTGCAGGACG 59 4154341 4154359 CACAGGCTGTGTATTTGGC 60 Novel Rattus norvegicus 81 AABR07032593.1 ENSRNOG00000052987 ENSRNOT00000079714 2 1 1 60 18 72921511 72921532 TCAACTGGGCTCATCTTATCTC 60 72920729 72920747 AGCCTTGCAGTACACTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019099.1 ENSRNOG00000057030 ENSRNOT00000080719 2 1 1 82 15 89029786 89030240 ACATTTGGGTTTGGGACAG 58 89029722 89029744 GGAGAAAGTCTGAGTAGATTCTC 58 Novel Rattus norvegicus 81 AC114093.2 ENSRNOG00000054926 ENSRNOT00000079653 3 1 1 129 18 74862368 74862386 TTTCACCGTCATTGTTGCA 59 74862478 74863543 CTTCTCCTAACTTGCTGGTC 58 Novel Rattus norvegicus 81 AABR07032640.1 ENSRNOG00000061277 ENSRNOT00000090840 1 1 1 80 18 75549013 75549813 CCTTCAAGACAGGTCTTCC 58 75549854 75549875 GATGCCTGTCCTCTTATTACTG 59 Novel Rattus norvegicus 81 AABR07051326.1 ENSRNOG00000055302 ENSRNOT00000088366 1 1 1 80 3 4943557 4943578 AGGATATGGGATGTGAAGACAG 60 4943617 4947082 ATTGAAATGAACGGCTGAGAC 59 Novel Rattus norvegicus 81 AABR07002902.1 ENSRNOG00000056429 ENSRNOT00000081905 3 1 1 87 1 88632221 88634886 CTACAGAGACCGAAGGACTC 59 88634936 88634954 CCTACCTGAAGGACCATGG 59 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000092226 1 1 2 108 1 89650121 89675244 GCCTTCCTCTTATTAGGCCT 59 89675315 89675333 CACTTCCTGGTACAGGGTC 59 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000092226 3 1 2 110 1 89650121 89675244 GCCTTCCTCTTATTAGGCCT 59 89675317 89675335 ATCACTTCCTGGTACAGGG 58 Novel Rattus norvegicus 81 AABR07032750.1 ENSRNOG00000059809 ENSRNOT00000088259 3 1 1 61 18 79660394 79660412 ACACGTCATGGACTCAGTG 60 79660437 79672153 CCCGTAGATGATGACCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 2 1 1 87 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14433623 14434666 TTTCATTGGCTGAAGTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051515.1 ENSRNOG00000058364 ENSRNOT00000080459 2 1 1 80 3 14660156 14700281 CAGATCAGGAGTTGGAGCC 60 14660094 14660112 CCGAGTTCTATGGAGCTCC 59 Novel Rattus norvegicus 81 AABR07019435.1 ENSRNOG00000055868 ENSRNOT00000080782 1 1 1 80 15 105341802 105349729 AAATGACCAGTTCATTCCACC 59 105341742 105341760 GCCATTCCATTCCAGACTG 59 Novel Rattus norvegicus 81 AABR07019437.2 ENSRNOG00000052178 ENSRNOT00000091356 3 1 1 82 15 105406984 105407002 TCATAGGTGGACACAACCA 58 105407046 105407559 TCAGTCATTCATTAAGTCGGC 59 Novel Rattus norvegicus 81 AABR07064727.1 ENSRNOG00000060584 ENSRNOT00000080093 1 1 1 80 6 91803708 91803726 CCCATTGGCTGGTTAACAC 59 91803767 91803911 CTCTGGTAGATTTAAACCCTGG 58 Novel Rattus norvegicus 81 AABR07051642.1 ENSRNOG00000057526 ENSRNOT00000084373 3 1 1 80 3 18601830 18601974 GATTACAGATGCCATACGTGAC 59 18602015 18602033 ATGGTGACAGTTTCTCCCA 59 Novel Rattus norvegicus 81 AABR07003049.2 ENSRNOG00000053564 ENSRNOT00000080393 1 1 1 84 1 95060868 95061351 GCTCTGTGGGTCATTTGAG 59 95061396 95061417 CTACAGATATTTCTTGCAGGCT 58 Novel Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 2 1 1 80 3 21379337 21379356 CCCATCTGGATGAAGAGGAG 59 21375979 21379296 ACTCCTTCAGAGTCATCTTCC 59 Novel Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 1 1 1 82 13 35886853 35887288 AAGACATCACCAGCAGGTC 60 35886789 35886807 CTTTCCATTCTGCACGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07073245.1 ENSRNOG00000053035 ENSRNOT00000077192 3 1 1 82 6 108930425 108930446 GAGAAATAGGAAGCAAACTGTC 58 108930489 108931461 CTTCCTTCTTCCTCCAGTG 57 Novel Rattus norvegicus 81 AABR07020952.1 ENSRNOG00000058523 ENSRNOT00000085706 1 1 1 85 13 48379053 48379071 AAGGGTGTTCTAACCAACG 58 48379120 48380763 TGCATGTCACAGAACTGAG 58 Novel Rattus norvegicus 81 AABR07065124.1 ENSRNOG00000055422 ENSRNOT00000083960 1 1 1 80 6 110891034 110891968 AAGAGGAGTGCACTGATCC 59 110892011 110892030 ATCCATCCCTTGTGTCATCC 60 Novel Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 3 1 1 122 3 33946882 33949984 GATGCTCAAGAGTCCCAGG 60 33946778 33946798 CTTATATGAGCAGTCTCGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052263.1 ENSRNOG00000055184 ENSRNOT00000077232 3 1 1 60 3 43694967 43694986 GTAGAGCTAACAGGGACCAC 60 43695006 43695027 GACTTCTGTATTGTCAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 1 1 1 65 11 39618473 39618491 CTGAGCATTGCCTTCTGAG 59 39618520 39648201 CTCTCACTCATGTTGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 3 1 1 76 11 39618520 39648201 AGGCCAACATGAGTGAGAG 59 39648235 39648259 CATCTTACCATTATCTCCTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058,ENSRNOT00000086587 3 2 2 81 6 119137202 119138985 TCCAATTTAAGGCATGCGTG 60 119139029 119139047 AATAACTTACGCAGGCGGT 60 Novel Rattus norvegicus 81 AABR07033851.2 ENSRNOG00000060551 ENSRNOT00000089542 2 1 1 83 11 40534285 40557202 GAACATTCAACTGAGGTTCGA 59 40534222 40534240 CTGTGGCACTTTCACTCTC 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 2 2 2 86 9 604681 605042 GTACTTGCTCTCCTGGACC 60 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07021391.1 ENSRNOG00000059183 ENSRNOT00000085088 1 1 1 83 13 69563802 69563820 GGAAGTACCTGCTGAAGGG 60 69563867 69564187 ACTGGATACGTGAACCCTG 59 Novel Rattus norvegicus 81 AABR07021391.1 ENSRNOG00000059183 ENSRNOT00000085088 3 1 1 85 13 69563800 69563819 TAGGAAGTACCTGCTGAAGG 59 69563867 69564187 ACTGGATACGTGAACCCTG 59 Novel Rattus norvegicus 81 AABR07052523.2 ENSRNOG00000060690 ENSRNOT00000086643 1 1 1 80 3 59393778 59393796 ATGAATGGACATGGTGCAG 58 59389455 59393736 CATGGCTGTTAATTTACGCTG 58 Novel Rattus norvegicus 81 AABR07003786.1 ENSRNOG00000051576 ENSRNOT00000092146 1 1 1 88 1 118322697 118324430 GGCAATTAATCTACCGTGGT 58 118322628 118322646 ATAGTTCAGTCGTAGGGCA 58 Novel Rattus norvegicus 81 AABR07034293.2 ENSRNOG00000052632 ENSRNOT00000089170 2 1 1 82 11 62943410 62949855 GGGTAGACAAGAAAGGTGC 58 62943346 62943365 TGAACCTTTCTTGTCTACCC 57 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 1 1 1 66 3 62621911 62622707 TTCTTCATGAGACGGCTGG 60 62621863 62621883 CTCTATTCCGGTTCTGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052598.1 ENSRNOG00000055544 ENSRNOT00000081155 1 1 1 80 3 65028840 65028860 CGTAATGAATCGGTTGAATGC 58 65027329 65028798 AGACGGTCTCTTGTACTGG 59 Novel Rattus norvegicus 81 AABR07004130.1 ENSRNOG00000053064 ENSRNOT00000085207 1 1 1 80 1 126387457 126403289 AGGAAGCTGTGGGTAACTC 59 126387395 126387416 TCTTAGAGAAGGTTTCCCTTGG 60 Novel Rattus norvegicus 81 AABR07065486.1 ENSRNOG00000060055 ENSRNOT00000088443 1 1 1 80 6 130796920 130797529 TCTGAGAACTCAACTCCTGC 60 130797569 130797590 CAGCCAATTCTTCAGATAGGTC 59 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000081827 2 1 2 83 13 100072289 100072307 GAGAGTGAGAGGACTCCCT 59 100072352 100072458 CGAAGAGACCACCTTAAACAC 59 Novel Rattus norvegicus 81 AABR07065600.1 ENSRNOG00000059736 ENSRNOT00000082819 2 1 1 81 6 136898852 136898870 TGGGAATCTTGGCTGACTG 60 136898913 136899494 GCGAATAATGATCTTTGCCCT 59 Novel Rattus norvegicus 81 AABR07022061.1 ENSRNOG00000061342 ENSRNOT00000078247 2 1 1 81 13 105281905 105281924 TGCTGTACCTTCGTCTTCTC 60 105281963 105282742 GTCCATGTACTTTATTTCTGGAGC 60 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 3 1 1 86 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470447 105472701 CAGTGTTTGGCGTTATCCT 58 Novel Rattus norvegicus 81 AABR07052926.1 ENSRNOG00000057412 ENSRNOT00000081064 3 1 1 74 3 84526853 84526871 AGTCATCTCTGGACTCGAG 58 84526233 84526252 GGCCTGATGTTGAAAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 2 1 1 60 13 107491209 107501002 AGACGAGTGTATGCTGGTG 60 107501026 107501044 CTACACAAACCGTCACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000080560 3 1 2 86 16 450876 451585 CATGGCAAACATGAAGAAACAG 59 450811 450829 TTCTTTCTTGGTGGTGCTG 58 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000082137 1 1 2 84 12 10130526 10130544 AACTTGTGCCCAAAGTTGC 60 10130278 10130478 CTTCTGGCAGAATCTGCAC 59 Novel Rattus norvegicus 81 AABR07066114.2 ENSRNOG00000052777 ENSRNOT00000088946 3 1 1 60 9 3026498 3026518 GGAAGTGATTTCAAAGTGCCT 59 3026458 3026478 TGTTCTGATGATTTCCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024648.2 ENSRNOG00000056373 ENSRNOT00000077775 3 1 1 83 16 10107645 10112021 CTTTGAATAGGCATTTGTGGG 58 10112065 10112084 GATCCAACTCAGGTTGTCAG 58 Novel Rattus norvegicus 81 AABR07004482.1 ENSRNOG00000054650 ENSRNOT00000082947 1 1 1 83 1 144847522 144847847 AAAGAAAGAGTCATGGGCC 58 144847894 144847912 CATTCACGAAGAAGGTGGT 58 Novel Rattus norvegicus 81 AABR07035486.1 ENSRNOG00000059220 ENSRNOT00000080542 3 1 1 123 12 17720685 17729351 AGAGAATGGGACTGTCTACAC 59 17729435 17729454 AAATACTGACCAGGCTCGAG 60 Novel Rattus norvegicus 81 AABR07066636.1 ENSRNOG00000052783 ENSRNOT00000085782 1 1 1 80 9 12068261 12068867 TAGCATTGACAGGAACATCTC 58 12068909 12068927 GGCATGTTCAGGATATCCG 58 Novel Rattus norvegicus 81 AABR07004703.1 ENSRNOG00000051996 ENSRNOT00000085870 2 1 1 81 1 151211013 151211032 GGAATTCCAAGCTACAGGGA 60 151211072 151216429 GCATCCTGTTTGTTTAGCTAGAG 60 Novel Rattus norvegicus 81 AABR07066782.2 ENSRNOG00000060676 ENSRNOT00000089080 3 1 1 82 9 16145590 16145612 CCAACTGACTTGCTTATGTTAGG 60 16145652 16149622 CAATTAACTGCATCAGCTCCA 59 Novel Rattus norvegicus 81 AABR07066820.1 ENSRNOG00000052724 ENSRNOT00000082584 1 1 1 80 9 17500955 17500973 GGATTCCTCAGTGTCTGCA 59 17501016 17501624 TTCTTTGCTGGATCTCTGGG 60 Novel Rattus norvegicus 81 AABR07066829.2 ENSRNOG00000061319 ENSRNOT00000083121 2 1 1 81 9 18187316 18191709 ATGAGATGTCCAAGTTCTCAG 58 18187255 18187274 TGCAAGGTCTATTGATCCTG 57 Novel Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 1 1 1 84 16 18597478 18598109 TTCCATGATACCAGCAGCC 60 18601917 18601935 ACTTTGCCTTCTCCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053717.1 ENSRNOG00000057575 ENSRNOT00000087160 3 1 1 124 3 122417299 122417317 GAACAGACTGCTACCCGAG 60 122418894 122418913 CAATCTCAGAATCGCACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066841.1 ENSRNOG00000055149 ENSRNOT00000091305 2 1 1 81 9 18919148 18920198 CAGCCAACAATTGTTGTCAC 59 18919086 18919104 AGCAAGATCCTACTCTGGC 59 Novel Rattus norvegicus 81 AC109886.1 ENSRNOG00000055574 ENSRNOT00000077128 3 1 1 125 3 124615587 124615606 AGAAGGTGGACTGTTCAGTG 60 124615694 124616584 ACCTGTCACCAGTGAAAGG 60 Novel Rattus norvegicus 81 AABR07024875.1 ENSRNOG00000053348 ENSRNOT00000080272 3 1 1 79 16 20362912 20362930 CCAGGAACAGCTCTGATCC 60 20361554 20361574 CATGAACACCATAGCATGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 1 1 1 80 12 22362444 22362864 CGAAATCACTCTGCAGTGC 60 22362907 22362926 TCCAAATTGGAACAGGAAGC 59 Novel Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 2 1 1 80 12 22362441 22362861 CACCGAAATCACTCTGCAG 59 22362905 22362923 AAATTGGAACAGGAAGCGG 59 Novel Rattus norvegicus 81 AABR07035790.2 ENSRNOG00000061009 ENSRNOT00000085223 1 1 1 84 12 22512875 22530798 CCAGAAGTTTCTGGTCTAAGAG 58 22530843 22530861 TTGAATTTGTGCTGCTTGG 57 Novel Rattus norvegicus 81 AABR07005032.1 ENSRNOG00000057739 ENSRNOT00000087078 2 1 1 80 1 176622004 176622817 CAACTGCTCTGGAGATATACCA 60 176622858 176622876 TACGGAATAGCTGCAAGGT 59 Novel Rattus norvegicus 81 AABR07071969.1 ENSRNOG00000056322 ENSRNOT00000089770 2 1 1 99 1 178596628 178607748 GCCTATTCAATTAAACCCACTG 58 178596550 178596568 TAATAACCAGCAGTTGCCC 58 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 2 1 1 144 9 27326031 27326049 TGTAGCATCCAGAGAAGCG 60 27325784 27325802 CATCCTCTGACAGGTTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053881.1 ENSRNOG00000058229 ENSRNOT00000077944 2 1 1 80 3 132172912 132172932 TGCTGATGAAAGATCAACTCC 58 132096990 132172871 ATTCGGCCATAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07053953.1 ENSRNOG00000053531 ENSRNOT00000079800 3 1 1 85 3 133764863 133778898 CCACAAAGAACAAAGTCACTC 58 133764798 133764817 ATGAGGATATAGCAGGAGCT 58 Novel Rattus norvegicus 81 AABR07054025.2 ENSRNOG00000058266 ENSRNOT00000087994 2 1 1 71 3 136374254 136376515 TGTAGAAAGTTTGTCCCTTGG 58 136376548 136376566 AATGCACCTCAGGTCAGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 1 1 1 100 12 28145664 28150421 GGTCAGGAACAAACTCCAG 58 28145582 28145600 AATCCATCTTCCCTCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054281.1 ENSRNOG00000059685 ENSRNOT00000087630 1 1 1 80 3 146214857 146214878 CTTGACTTTACATCATGTCCCA 59 146211439 146214819 GCAGCAGAAGAAATAATCTCAG 58 Novel Rattus norvegicus 81 AABR07036074.1 ENSRNOG00000054150 ENSRNOT00000087767 3 1 1 81 12 33520986 33521377 TTGTTACAGAGTCTACCCATCC 59 33521419 33521437 CTCAGGAAGTTCTCCAGGG 59 Novel Rattus norvegicus 81 AABR07067402.2 ENSRNOG00000058672 ENSRNOT00000084225 1 1 1 80 9 43255288 43255818 GTATTCACAAAGGCACTTGCT 60 43255858 43255878 GTCTCTTCTGTCACTTGACAC 59 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 2 1 1 97 12 38117927 38117945 CTATGAGCAAGAACGAGCG 59 38118004 38120632 AGTATTGTGCAACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 2 2 2 95 3 154850625 154850643 GATTACAGCTTCTGCAGCA 58 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07005921.1 ENSRNOG00000057633 ENSRNOT00000078400 3 1 1 80 1 206566614 206566632 CCTGCACAAAGAGTGTGAC 59 206566674 206569727 TCCTCTGACCACTTTAGAAGC 60 Novel Rattus norvegicus 81 AABR07036417.1 ENSRNOG00000056261 ENSRNOT00000083958 3 1 1 60 12 42646957 42646975 CTCCAGTTTCACGTCTTGC 59 42642393 42642411 CCTCATCCGTCTTGTCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067749.1 ENSRNOG00000051735 ENSRNOT00000088574 2 1 1 106 9 60881860 60883672 TCATGATGATCAGGTCAGGA 58 60881773 60881791 AGAAAGTGTTGCAGGAAGC 59 Novel Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000084407 3 1 2 95 16 65194745 65194763 TAGATCACGTGGGATGGAG 58 65194822 65254092 CACTTAGCGCTCCTTTCAG 59 Novel Rattus norvegicus 81 AABR07036452.1 ENSRNOG00000058699 ENSRNOT00000088109 2 1 1 82 12 43658333 43658351 AACTTTCTTGCCAGCTTCC 59 43658394 43658551 TTTCCCAACATCTGATGATTGG 59 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 2 1 1 88 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398595 210398614 AACTGTACTTTCGGAGTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026271.2 ENSRNOG00000061651 ENSRNOT00000081550 3 1 1 80 16 70016747 70018436 CACCGTCCAGAAGATATTATGG 59 70016688 70016709 AATCTTCTCAGACACTTCATCC 58 Novel Rattus norvegicus 81 AABR07036626.1 ENSRNOG00000051412 ENSRNOT00000083327 1 1 1 65 12 50622002 50622020 ACTCCAAGAATCGTCCCTC 59 50623566 50623585 GGCTGCATATTTCTCTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AC094001.2 ENSRNOG00000054222 ENSRNOT00000088592 2 1 1 61 1 216936885 216936903 AGGAGATTTCTGCCCTGTG 59 216934547 216934566 GGAGTTGAGGACTCTTTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054680.1 ENSRNOG00000058758 ENSRNOT00000087486 2 1 1 60 3 166823193 166823211 GGGTCATTCATACGAGTGG 58 166823235 166823253 GTATCAGGGAGTTGCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036640.1 ENSRNOG00000054829 ENSRNOT00000085103 2 1 1 60 12 51366311 51366329 GGAAGGCCTGTTAGAACAC 58 51362296 51362316 CTGGATCAGGTTCCTCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054755.1 ENSRNOG00000052268 ENSRNOT00000084074 1 1 1 94 3 168821029 168821047 TATCCCATGATGCTCTGCC 59 168821105 168821697 TTTGTAGTCCGCAACTGTG 58 Novel Rattus norvegicus 81 AABR07054809.1 ENSRNOG00000052782 ENSRNOT00000091217 2 1 1 62 3 169966069 169966087 ATTTATTCCAGCAACGGCT 58 169966194 169966213 TCATTCTGAAGCAGAATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068046.1 ENSRNOG00000059494 ENSRNOT00000084822 1 1 1 60 9 79450091 79450109 AGAAATTCGTGCTGCATGC 60 79374526 79374544 CCCTGAGAAATACCCACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054818.1 ENSRNOG00000058392 ENSRNOT00000085442 2 1 1 80 3 170477929 170477948 CAGAGTAGAGAAACAGTGGG 57 170477990 170479107 CAGGGTTGAGTGTACTTCTC 58 Novel Rattus norvegicus 81 AABR07037151.1 ENSRNOG00000055212 ENSRNOT00000082890 1 1 1 80 X 14552013 14552997 CTCTCCAGGTCAATGTTAACTC 59 14553036 14553056 ATTGCCTTCCAAGTAACATCC 59 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 2 1 1 87 3 171081386 171082682 TCTTCCAGGAGAGGAGAGG 59 171081317 171081335 AGAGACCAAGCTCAGATGG 59 Novel Rattus norvegicus 81 AABR07054837.1 ENSRNOG00000058726 ENSRNOT00000078943 3 1 1 148 3 171242108 171243419 ATGCTGACCATGATCAGGG 60 171243652 171243671 ACATTAGCAAGTACCTGGGT 59 Novel Rattus norvegicus 81 AABR07068085.1 ENSRNOG00000055174 ENSRNOT00000088612 2 1 1 80 9 82828685 82828704 AGATTTCTCTTCCCAGTGAC 57 82826486 82828644 CTTGTTGGTCATAAATGCCTG 58 Novel Rattus norvegicus 81 AABR07068094.1 ENSRNOG00000052509 ENSRNOT00000078476 3 1 1 81 9 83398647 83398804 TATTCAGCAGGTCTTGGTCC 60 83398848 83398866 TCGGTTGAAGGTTCTGGTC 60 Novel Rattus norvegicus 81 AABR07068198.2 ENSRNOG00000054702 ENSRNOT00000081485 3 1 1 96 9 89928369 89929096 TTTGAAGACTTTGCTGCGAG 60 89929155 89929173 CTCTGTAACTGCCAAGTGC 59 Novel Rattus norvegicus 81 AABR07006536.2 ENSRNOG00000057614 ENSRNOT00000080182 2 1 1 81 1 238932785 238932808 GTTTAAAGGTAACCTCCAGATCTC 59 238932843 238933414 GTTTCTATCATCCAGTAGATGTGG 59 Novel Rattus norvegicus 81 AABR07039024.1 ENSRNOG00000061799 ENSRNOT00000085184 1 1 1 83 X 66412469 66412669 ACTAGGAAGGTGCAGAAGAC 59 66412715 66412733 TACGGTATGCTCCAAAGCC 60 Novel Rattus norvegicus 81 AABR07039024.1 ENSRNOG00000061799 ENSRNOT00000085184 3 1 1 84 X 66412469 66412669 ACTAGGAAGGTGCAGAAGAC 59 66412716 66412734 GTACGGTATGCTCCAAAGC 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000077989 3 1 2 80 1 244421287 244540122 CTTTCCTCTTATGTCATGTGCT 59 244421228 244421246 AGTTAGAGTGCAAGCAGGT 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000088213 2 1 2 83 1 244421283 244436944 CTTCCAAGAAGTGCTGGGA 60 244421218 244421239 ATAGCTTACCAGTTAGAGTGCA 59 Novel Rattus norvegicus 81 AABR07026596.3 ENSRNOG00000060353 ENSRNOT00000082350 1 1 1 83 16 85391119 85392616 AAAGCCAAGTGTTTCAGGG 59 85391054 85391072 AAAGCAGCAAGTACCTCAG 58 Novel Rattus norvegicus 81 AC117971.2 ENSRNOG00000059452 ENSRNOT00000083273 1 1 1 63 7 19840748 19840766 TACTAGACGGAGTCTGGGT 59 19839404 19840724 ACGAACTACCCAAACATATTCG 59 Novel DesignRelaxed Rattus norvegicus 81 AC117971.2 ENSRNOG00000059452 ENSRNOT00000083273 3 1 1 64 7 19840748 19840767 CTACTAGACGGAGTCTGGGT 60 19839404 19840724 ACGAACTACCCAAACATATTCG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07040249.1 ENSRNOG00000057035 ENSRNOT00000086634 3 1 1 83 X 96396416 96396434 CTGTGACAAGTTTGCAGGA 58 96396140 96396159 GTTCCCAGAAAGAGTTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 3 1 1 70 1 251400935 251400954 ATGTAGTCACTGCTGAAGCA 60 251387973 251400904 ATCTTATGAAGGAGAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056415.2 ENSRNOG00000058322 ENSRNOT00000087908 2 1 1 82 7 24400119 24403938 CCATTTCTAAGAGACAACATCG 57 24403979 24403999 ATGAACCTTACTTCTGCTCAG 58 Novel Rattus norvegicus 81 AABR07068614.1 ENSRNOG00000060213 ENSRNOT00000080518 3 1 1 132 9 112181725 112206020 CTCTGTAGAGATATGGAGCCT 58 112181613 112181631 GAAGAGCATTTCCCACAGG 59 Novel Rattus norvegicus 81 AABR07056442.1 ENSRNOG00000060955 ENSRNOT00000077424 1 1 1 80 7 25763391 25764002 ATTCCAAGGCTGTAGGTGG 59 25763329 25763348 CGTGCAGGATAGAGAAGAGG 60 Novel Rattus norvegicus 81 AABR07027007.1 ENSRNOG00000056763 ENSRNOT00000086596 1 1 1 60 17 10451426 10451444 GTATCAAGAGGGAGCAGCA 59 10450782 10450801 GGTTCATCTTCTGGAGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042668.1 ENSRNOG00000051791 ENSRNOT00000091435 1 1 1 86 19 2391275 2392048 AATGAGGGAAGAATCCAGC 57 2392097 2392116 CACTACAGCAAAGGATACCC 58 Novel Rattus norvegicus 81 AABR07027022.2 ENSRNOG00000060239 ENSRNOT00000078774 1 1 1 89 17 11208838 11208856 ATTCTTCCCACTGTCTCCC 59 11208909 11211332 TTCCCTCATCTAGGAGCCA 59 Novel Rattus norvegicus 81 AABR07027029.1 ENSRNOG00000053786 ENSRNOT00000087925 1 1 1 66 17 11654751 11654772 TCTCCGTGACTTAAGAATAGTC 57 11651351 11651369 GAAATCATGGGCTAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027039.1 ENSRNOG00000053981 ENSRNOT00000091714 1 1 1 80 17 11850949 11850969 TCCAGTTTGTGTCAAGTTGAC 59 11848083 11850909 TGACCAATGACTTATTCCGTG 59 Novel Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 3 1 1 88 7 37404496 37406720 GCTTTGTGGTTCCTACAGG 59 37406770 37406790 CTGGACTCATTTCCAATACCA 58 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 2 1 1 60 17 20636834 20636857 CCTGTGAAGTTACTGATTAGAGGA 60 20636876 20668845 AGCTGTGGTCCTTTACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC096326.1 ENSRNOG00000060966 ENSRNOT00000086048 3 1 1 97 1 265421209 265421227 CCTCTACCCTCAAGTGTCC 59 265429561 265429579 AGTTGTCCTTGGTCTCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089968 3 1 3 80 17 21002718 21005680 AGAATTGCAGTTTAGAGGACAG 59 21005718 21005739 GATGATCAAGAGATGGTGAACC 59 Novel Rattus norvegicus 81 AABR07056791.1 ENSRNOG00000055691 ENSRNOT00000081059 3 1 1 121 7 41415436 41416601 TTGATCTTAGCACACCACC 58 41415333 41415353 GCGAAGTCTTTATTGTGATCC 58 Novel Rattus norvegicus 81 AABR07027287.1 ENSRNOG00000051834 ENSRNOT00000086273 2 1 1 91 17 22983150 22984073 AGAACAATACACCACTTGGG 58 22983078 22983097 GGAGACCTTAGGTATTGGTG 57 Novel Rattus norvegicus 81 AABR07069360.1 ENSRNOG00000057602 ENSRNOT00000078630 2 1 1 85 8 18225369 18226137 CATTGCAGGGAAGACTCAC 59 18226186 18226204 CTTTCTCTTGCTCTTGGCT 58 Novel Rattus norvegicus 81 AABR07006925.1 ENSRNOG00000056850 ENSRNOT00000089632 3 1 1 90 1 271769391 271771579 CAGCTGAAAGTTCTGTCATCAG 60 271769322 271769341 CCAGTTCGTTGCTAAGTCTC 59 Novel Rattus norvegicus 81 AABR07069490.2 ENSRNOG00000058106 ENSRNOT00000082246 1 1 1 80 8 24108470 24114786 AGATCCTAAGTGGAATTCAGGT 59 24114825 24114845 TCTGTATTTATGGGAGCTGCA 59 Novel Rattus norvegicus 81 AABR07057176.1 ENSRNOG00000061637 ENSRNOT00000083123 2 1 1 110 7 58882490 58882508 GTGAGGATTCTGGGACAGG 60 58873760 58882417 ATAATGTCCCTTCGGGTCAG 59 Novel Rattus norvegicus 81 AABR07027390.3 ENSRNOG00000057157 ENSRNOT00000079814 3 1 1 104 17 27876747 27876765 CTTGTGGGAAAGCACAGAG 59 27869894 27869913 CAGTAAGGCAGGTTGTATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069587.2 ENSRNOG00000051630 ENSRNOT00000090792 3 1 1 89 8 32638716 32638734 GAACAGTGGCTTGTGTTGG 60 32646572 32646593 AGCATCTGTCACTAGATCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057325.1 ENSRNOG00000059391 ENSRNOT00000086676 2 1 1 81 7 65729589 65731372 CTTCCGACGGTCATTTACAG 59 65729527 65729545 AAGACAAGCAGGATCTCGT 59 Novel Rattus norvegicus 81 AABR07043365.1 ENSRNOG00000058666 ENSRNOT00000083526 2 1 1 80 19 27833483 27833502 ATGATGGACACAGGACATGG 60 27834579 27834597 CCTGCACCTTGTTTAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 2 1 1 61 7 69338622 69339911 AGACAGAAGAGTTGTTTGCA 58 69339935 69339953 CAGACTTCTCATGTTGGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057443.2 ENSRNOG00000059258 ENSRNOT00000078256 2 1 1 81 7 71502093 71503862 AAATCATTCCTGAACACAGCG 60 71503905 71503923 TTTGTTCCTGTGTCCCTCC 60 Novel Rattus norvegicus 81 AABR07007078.1 ENSRNOG00000056390 ENSRNOT00000085111 2 1 1 90 1 279688281 279688299 GCATCAAAGCAGTAGAGCA 58 279694934 279694952 TTATCACACTGGTCACTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 3 2 2 80 10 196629 197045 CCAGTGGATTCAGGAACGA 59 196567 196587 CAGAAGATGTCAGTCATCCCA 60 Novel Rattus norvegicus 81 AABR07028995.2 ENSRNOG00000057886 ENSRNOT00000083856 3 1 1 89 10 1702573 1702591 TCAGTTTGAGGAACACCCT 59 1701686 1701706 CCCTTCTTTACTGGTATTGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070069.1 ENSRNOG00000053546 ENSRNOT00000089282 1 1 1 80 8 47557186 47557204 CCAATGGCAGCTTCTTTCC 60 47557247 47560344 ATGTGTCTTCAGAGGCTCAG 60 Novel Rattus norvegicus 81 AABR07057640.1 ENSRNOG00000054328 ENSRNOT00000090645 3 1 1 95 7 82158475 82158493 AGCAATCTTCACTGCTGTG 59 82158552 82160470 TTTCTCCAGAACAGCTGTG 58 Novel Rattus norvegicus 81 AABR07029175.1 ENSRNOG00000054141 ENSRNOT00000089720 1 1 1 76 10 11358544 11358564 GCTGATAAGAAACTGGTGGTG 59 11362046 11362064 TCTTCCAGCAGTGTACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057907.1 ENSRNOG00000053194 ENSRNOT00000079537 1 1 1 80 7 93611933 93617401 AATTCGTACAGATACGGCCA 59 93611872 93611891 TGTTCTTTCCAACCTTCACC 58 Novel Rattus norvegicus 81 AABR07029220.2 ENSRNOG00000054610 ENSRNOT00000086828 1 1 1 96 10 16183198 16183216 GTGAACAAACCCACCAGTG 59 16182897 16182915 GAAGTTTCCAGCCAACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.2 ENSRNOG00000054610 ENSRNOT00000086828 2 1 1 97 10 16183198 16183216 GTGAACAAACCCACCAGTG 59 16182896 16182914 AGAAGTTTCCAGCCAACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070151.1 ENSRNOG00000058918 ENSRNOT00000091893 3 1 1 80 8 54639422 54640815 AGGTCCAAGCTCCTATGAC 59 54639360 54639378 AAGTCAGGATCTCGTGAGC 59 Novel Rattus norvegicus 81 AABR07070161.6 ENSRNOG00000060387 ENSRNOT00000091503 3 1 1 113 8 55537981 55538190 AAACAACAAGAGGCTGCTG 59 55537886 55537905 AAGGATCTCCAGTTGGTGAG 59 Novel Rattus norvegicus 81 AABR07041772.1 ENSRNOG00000060140 ENSRNOT00000089262 2 1 1 80 X 139264427 139281585 TTTCCTTTCAGCTGTGACTG 59 139281626 139281646 TGCTTACCTACTACAACACCA 59 Novel Rattus norvegicus 81 AABR07041772.1 ENSRNOG00000060140 ENSRNOT00000089262 3 1 1 80 X 139264428 139281585 TTCCTTTCAGCTGTGACTG 58 139281627 139281647 TTGCTTACCTACTACAACACC 58 Novel Rattus norvegicus 81 AABR07007793.1 ENSRNOG00000061197 ENSRNOT00000083741 2 1 1 83 2 28658167 28658186 AGAACAGTCACTCTCCAGAG 59 28657581 28658123 CTCTTCCTGCTATAACCTTCG 58 Novel Rattus norvegicus 81 AABR07042407.1 ENSRNOG00000058951 ENSRNOT00000077816 3 1 1 64 X 155110176 155110194 GGGAAAGCAATCTTCTGGC 59 155110222 155123445 ACTCATGCTGGACTCTGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07042440.2 ENSRNOG00000057466 ENSRNOT00000080296 1 1 1 80 X 155796120 155796138 GCTCAAGTAAGAGGCAAGC 59 155794451 155796078 TTCTGCATCCTCAACATTTGG 59 Novel Rattus norvegicus 81 AABR07042440.1 ENSRNOG00000053800 ENSRNOT00000083165 2 1 1 88 X 155804008 155804026 AAGACATTGCAGGTGTTGC 59 155800249 155803958 GTGAGATAGCTAGTGGTCGAG 60 Novel Rattus norvegicus 81 AABR07058511.1 ENSRNOG00000061168 ENSRNOT00000090660 2 1 1 84 7 121438588 121456064 ACAATGTGAGGCCAGAGAC 60 121438522 121438541 TCTAGGTGGGTATGGGTACC 60 Novel Rattus norvegicus 81 AABR07042465.1 ENSRNOG00000060122 ENSRNOT00000082615 2 1 1 92 X 157591201 157591429 CTTGGTCTTTCAGGTGCAC 59 157591127 157591146 TCCTACCACATTCCCTTTCC 59 Novel Rattus norvegicus 81 AABR07007833.1 ENSRNOG00000051366 ENSRNOT00000077692 1 1 1 80 2 29795512 29796079 GACTCACTCAGGTACATATGC 58 29795452 29795471 CATAGCTCTATTCCTGCTCC 57 Novel Rattus norvegicus 81 AABR07007833.1 ENSRNOG00000051366 ENSRNOT00000077692 2 1 1 80 2 29795512 29796079 GACTCACTCAGGTACATATGC 58 29795452 29795472 CATAGCTCTATTCCTGCTCCT 59 Novel Rattus norvegicus 81 AABR07028039.1 ENSRNOG00000058764 ENSRNOT00000090269 1 1 1 86 17 54485324 54485342 AACATGTCTGAGGGAGCTC 59 54485391 54497523 CAAGTTCTCCTGTTCCAGTG 59 Novel Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 1 1 1 101 2 32297556 32297695 CTTACTGCAGAACTGCGTG 59 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07044427.1 ENSRNOG00000059881 ENSRNOT00000085168 2 1 1 80 20 5790676 5790696 ACTTGACTGTAATGGAGACGT 59 5790173 5790639 CCAGTAGGACCTTTATCCTATCTG 60 Novel Rattus norvegicus 81 AABR07044551.1 ENSRNOG00000054555 ENSRNOT00000090014 3 1 1 107 20 10492179 10493148 GGTATCTGATCCCTGCCTC 59 10492090 10492111 GGATATTTATAGGGCAGAGCAG 58 Novel Rattus norvegicus 81 AABR07028186.1 ENSRNOG00000053465 ENSRNOT00000089697 2 1 1 93 17 59365321 59365507 AAAGAATGGGTACAGGCGT 59 59365563 59365582 TCTACGTAAGTTCACTGCCA 59 Novel Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 2 1 1 68 4 5628140 5628158 CACTCATGGCCATAATGCT 58 5627199 5628110 AACTTAATCCTTCCTCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044569.1 ENSRNOG00000053658 ENSRNOT00000091555 1 1 1 80 20 10681521 10683507 AAATAAACCGAGGAAGCCAC 59 10681460 10681478 CGATTCTCCAAAGGCAAGG 59 Novel Rattus norvegicus 81 AABR07059239.1 ENSRNOG00000053011 ENSRNOT00000088521 3 1 1 93 4 10566667 10582640 CTGGTGTAAAGGAGCTGTG 58 10566592 10566610 AATGCTAACAGGGTTCCAC 58 Novel Rattus norvegicus 81 AC098763.1 ENSRNOG00000060382 ENSRNOT00000078305 3 1 1 100 20 12944628 12944646 CAACACCAATGAGCGAGAC 59 12942299 12942318 GTCTTCTTCCCAGGACATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 3 1 1 73 20 14912479 14912497 TTCATAGCACCTCTGTGCT 59 14912290 14912445 TACTTCATGCTTCTTGGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028281.1 ENSRNOG00000054750 ENSRNOT00000090527 2 1 1 81 17 63020695 63020713 GTTTAGCTCCCAGTCACGA 59 63020241 63020652 AAAGTCACGTTTCGAACTCTC 59 Novel Rattus norvegicus 81 AABR07059499.1 ENSRNOG00000058022 ENSRNOT00000081034 3 1 1 81 4 22048280 22048300 TTAAGGTTCCACAAAGACAGC 59 22048341 22068929 TCAGATCTTCCTCTGCATTCC 60 Novel Rattus norvegicus 81 AABR07028513.2 ENSRNOG00000054192 ENSRNOT00000082986 2 1 1 81 17 73118410 73122174 GATATGTGGCAGGGATAAGAC 58 73122217 73122235 GCAAGACTTCCAGTGTCTC 58 Novel Rattus norvegicus 81 AC107447.1 ENSRNOG00000058221 ENSRNOT00000083635 3 1 1 60 4 31490629 31490647 AGACATCTTGTGTCCTTCG 57 31489693 31489713 CTGTGATAAGGTTGTTGGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059807.1 ENSRNOG00000054988 ENSRNOT00000078563 2 1 1 80 4 36726754 36726774 GGAATATCACCTCTTCACGTC 58 36726816 36728954 GGAATTCACTGGTCTTGGG 58 Novel Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 3 1 1 61 17 79978394 79978414 TAAGTGGATGGAACAGAGTGG 60 79964682 79978373 AATCTTTGCCGTTTCGAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028691.2 ENSRNOG00000056948 ENSRNOT00000092155 3 1 1 60 17 81443968 81443988 AATGCTCAACTCATGACTCTC 58 81442725 81442746 GTTTGTAGGGCTATACCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 3 1 1 62 4 39637142 39637161 AATAACGTTTGCACCTGTCG 60 39637005 39637117 CTCACAGATGCTTGTCTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044836.1 ENSRNOG00000061934 ENSRNOT00000081974 1 1 1 80 20 23027475 23027494 GATGAGGCCATGTTGATGAG 59 23025316 23027433 CAGAAGAGCTCCTTGTTGAG 58 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 2 1 1 80 17 86741678 86744785 CGCTCGAGAAGCTATCTCC 60 86741616 86741637 TGTCTTGTTATTGGTGAAAGGC 60 Novel Rattus norvegicus 81 AABR07059974.1 ENSRNOG00000057555 ENSRNOT00000078551 2 1 1 83 4 47296262 47330980 CATATCAGGTGAAATTGCTGTC 58 47331021 47331042 GATACTTGCTCTAAACGATGGA 58 Novel Rattus norvegicus 81 AABR07059991.1 ENSRNOG00000057163 ENSRNOT00000089128 2 1 1 99 4 47937488 47942058 GAGAAATACAGAAAGCAAAGGC 58 47937410 47937431 TCACATATCTTCATGCCTTACC 58 Novel Rattus norvegicus 81 AC128293.1 ENSRNOG00000061434 ENSRNOT00000085443 2 1 1 108 4 57779335 57781192 TGGACATTCTGGAAGGGAG 59 57781264 57781282 GAAACTGTTGCAACTTGCC 58 Novel Rattus norvegicus 81 AABR07071551.1 ENSRNOG00000056838 ENSRNOT00000085283 3 1 1 81 8 121662940 121662960 GAACACATTCCAGGGTTTGAC 60 121659181 121662897 CTTCTGTTCTTCCCTGCCA 60 Novel Rattus norvegicus 81 AABR07071567.2 ENSRNOG00000055260 ENSRNOT00000085415 1 1 1 110 8 122324378 122324396 TGAGAGGGCTTTCAGAAGG 59 122324469 122329458 ACAGAATACCAGACGAAGGA 58 Novel Rattus norvegicus 81 AABR07043863.1 ENSRNOG00000057385 ENSRNOT00000090619 1 1 1 109 19 44739663 44739681 GTGCCATCTGAATGGACTC 58 44738656 44739591 TTTCTGTTTCAGTGGCTAGC 59 Novel Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 3 1 1 90 8 124166779 124166974 TTTGGTCCTGCATCCTCAG 60 124167027 124167046 AGAGATCACTTACCCAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 1 1 1 151 2 73912289 73956522 ATGTTGTTCAGGACTCAGC 58 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 1 1 1 80 19 45850155 45850564 AGAAATAAGAAACGGAAGCACC 59 45850096 45850114 ACAACATCACAGAGGAGCT 59 Novel Rattus norvegicus 81 AABR07071659.2 ENSRNOG00000053160 ENSRNOT00000089661 3 1 1 100 8 126082688 126082708 GAAACTACCAAACTCCAAGCC 60 126082508 126082626 TAGCCAAACAGAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07043940.1 ENSRNOG00000052678 ENSRNOT00000085197 1 1 1 80 19 48958330 48958351 GGAGAAATTCCTAAGAAGAGGC 59 48958390 48960137 TCTAACATCCCAGTCAGTGTC 59 Novel Rattus norvegicus 81 AABR07071659.3 ENSRNOG00000059340 ENSRNOT00000087790 1 1 1 80 8 126260757 126260775 CATAGGTGCTTTGTCCGAG 58 126258601 126260714 TTCACATCAATCCACTCCAG 58 Novel Rattus norvegicus 81 AABR07058711.1 ENSRNOG00000061588 ENSRNOT00000084840 2 1 1 63 7 134419369 134419387 CTATCGAAAGGCAGAGCAG 58 134419645 134419664 GCAGATATTAGCCACAAACC 57 Novel DesignNoJunction Rattus norvegicus 81 AC131521.1 ENSRNOG00000056336 ENSRNOT00000080553 1 1 1 81 2 78824479 78824499 CTCTGAAACCTTTGTCATCCC 59 78822825 78824436 AAGTAGGTTGAAGCCCAGG 59 Novel Rattus norvegicus 81 AABR07058723.1 ENSRNOG00000060824 ENSRNOT00000090216 2 1 1 163 7 135090436 135091626 GTCTGCCAGAGGTATCAGG 59 135091751 135091771 TTCTCATTGTCCCTGAGAGTG 60 Novel Rattus norvegicus 81 AABR07058723.1 ENSRNOG00000060824 ENSRNOT00000090216 3 1 1 163 7 135090435 135091625 GGTCTGCCAGAGGTATCAG 59 135091751 135091770 TCTCATTGTCCCTGAGAGTG 59 Novel Rattus norvegicus 81 AABR07071768.1 ENSRNOG00000061710 ENSRNOT00000087726 2 1 1 88 8 130347928 130350237 CCATAGAGTGAAATGGATAAGAGG 59 130350284 130350302 GTACAGTGGGAACTGAGGA 58 Novel Rattus norvegicus 81 AABR07071768.1 ENSRNOG00000061710 ENSRNOT00000087726 3 1 1 88 8 130347928 130350237 CCATAGAGTGAAATGGATAAGAGG 59 130350283 130350302 GTACAGTGGGAACTGAGGAG 60 Novel Rattus norvegicus 81 AABR07058805.1 ENSRNOG00000055438 ENSRNOT00000089767 3 1 1 81 7 138228628 138228647 GGTTGCTGTTGCTATCTGAG 59 138228691 138228871 TGAGTCCCAGAATTCCTGC 59 Novel Rattus norvegicus 81 AC103129.4 ENSRNOG00000057792 ENSRNOT00000090952 3 1 1 110 7 140075933 140075952 CTTTGGATATCCAGAACCCA 57 140073692 140075860 ATTTCTGCACAAATGCTGG 57 Novel Rattus norvegicus 81 AABR07007093.1 ENSRNOG00000052475 ENSRNOT00000081218 2 1 1 80 1 280957846 280959010 ACAGACAGAGGATCAAAGAGG 59 280957786 280957804 TCCTTGAGCGAAGGTTCTC 59 Novel Rattus norvegicus 81 AABR07009824.1 ENSRNOG00000056392 ENSRNOT00000083360 3 1 1 88 2 113907591 113907611 TGAGAACCAGAATTACTCCAG 57 113907660 113956749 AAACAAGACTCTGTGTAGCC 58 Novel Rattus norvegicus 81 AABR07010031.1 ENSRNOG00000055532 ENSRNOT00000089323 1 1 1 80 2 121240928 121243491 GAGCTGAAGACAAAGGATTCC 59 121243531 121243551 TTTGGCATCATGGGAAATGAC 60 Novel Rattus norvegicus 81 AABR07010180.1 ENSRNOG00000055930 ENSRNOT00000085419 2 1 1 80 2 127975757 127978976 TTGCAGACCATCTGTGAGG 60 127979019 127979038 AGGATGAAGAACCTTCTGGC 60 Novel Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 3 1 1 64 2 133026457 133028548 GCAGGAAAGTCCTACAGGA 59 133026411 133026429 TTCCCGTCATCCTCTACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010385.1 ENSRNOG00000052107 ENSRNOT00000085550 3 1 1 81 2 133881672 133881695 CCTCACTAAAGCAGACTTTAAGAC 60 133881734 133881881 TCTAGTTTCTCTGTAGCCGC 59 Novel Rattus norvegicus 81 AABR07010609.2 ENSRNOG00000058331 ENSRNOT00000077599 1 1 1 80 2 143347764 143357455 GAAGAAAGAGTCCCTATCATGG 58 143347705 143347725 CTGAGAGGTGACATGATTTCC 59 Novel Rattus norvegicus 81 AC111231.1 ENSRNOG00000052809 ENSRNOT00000083792 1 1 1 62 2 150267187 150267205 TCCTCAAGAGATACAGCCA 57 150268085 150268109 GGTATGAGTCTTAGAGTTTCAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 1 2 2 108 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311100 156311118 GGTAGGGAAGGGAAAGCTG 60 Novel Rattus norvegicus 81 AABR07011888.1 ENSRNOG00000053028 ENSRNOT00000085019 3 1 1 80 2 174306752 174306772 TCTAGGACAGATTCGACTCCA 60 174254896 174306711 GTTCCACTGAAATGTCCGTG 60 Novel Rattus norvegicus 81 AABR07011947.1 ENSRNOG00000061687 ENSRNOT00000090996 2 1 1 83 2 177482374 177489455 CAGAGACTTGGGTGGACTC 59 177482309 177482329 TCTCCTCATATGTAGTCAGCC 59 Novel Rattus norvegicus 81 AABR07012131.2 ENSRNOG00000060439 ENSRNOT00000089636 1 1 1 60 2 186751427 186751445 TAGAACTGCTTGGTGTCCT 58 186751197 186751215 GCTAAGTTACCCAGGACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012195.1 ENSRNOG00000053596 ENSRNOT00000078105 3 1 1 60 2 190505926 190505946 TCTTGGAATTGCCTTTATGGG 59 190505228 190505248 CTCCAGTGAAGCTTCATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012640.1 ENSRNOG00000051856 ENSRNOT00000080205 2 1 1 60 2 201019179 201022088 TTGATAAGCTCTTTGCCCA 57 201022111 201022130 AGCATCCATTCTTCATGAGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 3 1 1 63 14 3983313 3993508 GTTCCCAATGTGCACTGAC 60 3983268 3983287 CTTCTGTTTCTTGGCAACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC129695.1 ENSRNOG00000053644 ENSRNOT00000083507 1 1 1 140 14 6875512 6877508 TATATGCCAGACTGCTGCC 60 6875390 6875409 ACAGAGATGCACTACATGCT 59 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 2 1 1 110 14 8895754 8895772 TATGAGATGGACCTCGGTG 58 8894486 8895680 CTTCACCATCCAGTGAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072374.2 ENSRNOG00000057504 ENSRNOT00000090980 1 1 1 80 14 11453768 11453934 CTCAGAAGGATCAAGGTCCA 59 11453707 11453727 GGTAAATGTCAGACACCAGGA 60 Novel Rattus norvegicus 81 AABR07012884.1 ENSRNOG00000052614 ENSRNOT00000081168 1 1 1 80 2 213687107 213687637 ACATGACAGCCACAGATCC 60 213687678 213687699 TCTTTCTTGATGACGTTTGCTG 60 Novel Rattus norvegicus 81 AABR07013439.1 ENSRNOG00000061584 ENSRNOT00000077548 2 1 1 60 2 237482528 237482547 TTCACTTCAGCTTCCTAGCA 59 237482567 237482588 GTTATGTGTCTTCTAGCAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 1 2 2 80 2 254033890 254034509 ATCTTGATCAGGAACTGACTACC 60 254034549 254034567 TTAACTCTCGCTTCGCCTC 60 Novel Rattus norvegicus 81 AABR07013764.1 ENSRNOG00000053817 ENSRNOT00000090223 1 1 1 80 2 255480332 255480352 TCACTGTGACTTTAACAGAGG 58 255476859 255480292 GCTTTCTCCATAGACTTCCTG 58 Novel Rattus norvegicus 81 AABR07013841.1 ENSRNOG00000059248 ENSRNOT00000078408 1 1 1 80 2 258783425 258783725 GTAATGCTGACAAGGTCATCC 59 258783767 258783785 TGAAGTCAGAGCAGACGAG 59 Novel Rattus norvegicus 81 ENSRNOG00000059050 ENSRNOT00000088535 2 1 1 80 1 42968141 42968160 ACCTCATGAATGTCAAGCTG 58 42967654 42968094 CACCATTCATCCTGCACTC 59 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000055345 ENSRNOT00000086162 3 1 1 60 2 229931505 229931523 TTGTGAGTTCAGAGGAGGA 58 229931463 229931481 ACTGGAAACCACAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028530.1 ENSRNOG00000047547 ENSRNOT00000072769 2 1 1 60 17 73695581 73695600 AATGCCTCCATGAGATCCAG 60 73695623 73695641 TCCTTCCACCCTTGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051692.1 ENSRNOG00000056273 ENSRNOT00000090581 2 1 1 60 3 19441797 19441817 GGTCTGGGACCTCTTATTCTC 59 19441839 19441857 TAAGTGGCAGCATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061241 ENSRNOT00000083063 3 1 1 60 4 114638412 114638431 CCACAATGTAGGAAGCAGGA 60 114638371 114638391 GCCAGCACAAATATAGAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053741.1 ENSRNOG00000053270 ENSRNOT00000085922 1 1 1 80 3 123157004 123157026 AGCACCATATAACAAGAACGTG 59 123156945 123156964 TGAGAGTGGCTGACATTCTG 60 Novel Rattus norvegicus 81 AABR07053741.1 ENSRNOG00000053270 ENSRNOT00000085922 2 1 1 81 3 123157006 123157028 GAAGCACCATATAACAAGAACG 58 123156946 123156964 GAGAGTGGCTGACATTCTG 58 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 2 1 1 64 1 214446736 214446754 AAGGAACTCAGGACACTGC 60 214446688 214446706 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000074349 1 1 4 82 5 77725020 77725043 GAGAGTGCAGGAAACTATATTCAG 59 77724271 77724981 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 2 2 2 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4093513 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000092119 3 1 2 87 10 4487999 4488719 CAGGCGAGCATAAGAAAGG 59 4488769 4488788 TTTCACTCCCATTCAACAGC 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076937 2 1 3 85 X 65559235 65559253 GTGAAGAATACGCTACGCC 59 65455501 65559186 CTGTGACCATCCTGTACCC 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000052568 ENSRNOT00000087299 1 1 1 60 1 251102195 251102214 GAGTTGGAATAGGAGCTTGC 59 251102237 251102255 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053938 ENSRNOT00000091915 2 1 1 60 1 56864841 56864863 GACTACAGAAAGTCAAGAACAGG 59 56864803 56864822 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 2 2 2 60 5 151395728 151395746 CACTGTCTACTGCCTCCTG 60 151395686 151395706 CAGGGTAAGGTAGGTGTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000058552 1 1 5 80 2 123659970 123659990 ATGATAACCTACCATGTGACC 57 123660030 123664570 CTCCTTCATCCTGTTCATCTG 58 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000058552 2 1 5 80 2 123753598 123753618 GAAGGTCACAGTTAGACTCCA 59 123753658 123753782 AAATATGAGCGACCATCTCCA 59 Novel Rattus norvegicus 81 AABR07022134.1 ENSRNOG00000053694 ENSRNOT00000085932 3 1 1 120 13 109490651 109490669 GAGTGAAGAAGCCCTACCG 60 109490462 109490568 CTCACTCGCTTCTGAAACAG 59 Novel Rattus norvegicus 81 AABR07068154.1 ENSRNOG00000027719 ENSRNOT00000038372 1 1 1 72 9 86257216 86257234 CAAAGGAGTCAAGCTGTCC 59 86257160 86257178 TAGCACAGAACAGTAACCG 57 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051675 ENSRNOT00000083238 2 1 1 60 3 38777692 38777713 ACAACTAGACAGACTGAACAGG 60 38777731 38777752 TAAATGAGTGACCAGGAGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049862.2 ENSRNOG00000061027 ENSRNOT00000080301 2 1 1 103 5 141487797 141487817 CCGAAGAACATACTTGGAGAG 58 141487882 141487902 GTGATGTGAGTCTCACCAG 58 Novel Rattus norvegicus 81 AABR07049862.2 ENSRNOG00000061027 ENSRNOT00000080301 3 1 1 103 5 141487796 141487817 TCCGAAGAACATACTTGGAGAG 60 141487881 141487901 TGATGTGAGTCTCACCAGG 59 Novel Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 1 1 1 61 2 78427451 78427470 TGATGTGAAATGGCAGTCAC 59 78427356 78427374 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 2 1 1 62 2 78427451 78427471 TTGATGTGAAATGGCAGTCAC 60 78427356 78427374 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 1 1 1 66 1 169095042 169095060 CAAGAGGAGCAGATCCGAG 60 169095091 169095109 GCACAAAGAACACAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 3 1 1 88 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346446 95346465 GTAGCAACACTGGTAGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000090367 3 1 2 88 2 257505619 257514428 CAACAGAGCTAATCCTTGCAG 59 257505551 257505572 GGCTTTCACAATTAAAGCAGAC 59 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370 1 1 2 80 2 257507266 257507364 CGCTCCAGAGAATGTATTTACC 59 257505620 257505640 TGCAAGGATTAGCTGAAAGAC 59 Novel Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 1 1 1 60 4 103403934 103403952 GGATTCCTGTTGCTATGGT 57 103403780 103403798 ATGGAGACTGGGTCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052155 ENSRNOT00000077187 2 1 1 60 13 96290030 96290052 CAATACAGAGAAGATTAGCCTGG 59 96290071 96290090 GAATGCTTCATGAATTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131885.1 ENSRNOG00000058920 ENSRNOT00000091946 1 1 1 80 6 136301482 136304003 TATAACCGAGACTGGTACAAGC 60 136304044 136304062 CTTGCTCCACATCCTCTCC 60 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000054237 ENSRNOT00000085859 1 1 1 60 13 44585952 44585973 AATTGGCTGAGGGAAATTACTG 59 44585988 44586012 GTAGGCTAGAAGTATACGAATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054237 ENSRNOT00000085859 3 1 1 64 13 44585895 44585913 GTTGAGTTCAGTTCAGGGC 59 44585941 44585959 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057745 ENSRNOT00000086074 2 1 1 68 X 118542498 118542519 TCCTTGTAACCAATTAGGTCTG 58 118542451 118542470 GCAGGATAGTTTCTCGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059396 ENSRNOT00000083945 1 1 1 60 19 17244629 17244647 CTGAACTCCAAGAGGACCA 59 17244667 17244689 AATAGATACCCTTGACCGAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060960 ENSRNOT00000085053 3 1 1 61 15 20186331 20186349 CCAAGGCGCAATTATTGCT 60 20186288 20186310 CTATTTGACTCTGAAGCAGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 1 1 1 78 1 234836370 234836389 TCCCTGAAAGAATTCCAGGA 58 234836239 234836260 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 2 1 1 75 4 157026430 157026448 AGAAGAGGAGGTTGCACAG 59 157008609 157008627 CCACTGAGCCATTTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 1 1 2 80 17 14947092 14947112 GCAAAGAATGTGGAAGAGACC 60 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 3 3 4 103 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672 1 1 2 96 16 33375796 33375825 ATCAGGAACAGTTAAACAACCC 59 33375882 33375900 CTAAACCCGTCTGGACCTG 60 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 3 1 1 76 9 43488583 43488602 TGCCTGGTATCTTGTTTCTG 58 43488521 43488541 AAGTCAAACTTCCTCTGTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 3 1 1 60 10 79210664 79210682 ATGTTTGGACTCCCAAGGA 59 79208794 79208812 AGGAACTACAGCTGAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 3 2 2 96 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159820 93159840 TGCTTCAGATCTTGAAGTTCC 58 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 3 1 1 60 4 132914646 132914665 TTGCCTTTGTTCTCACTCAG 59 132918165 132918184 ATGTTGCCTTTAATGTGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 2 1 1 67 4 161342573 161342592 AACAGAGATGGTATTTGGCA 57 161387689 161387707 AGATCCAGAGTCAGTCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 2 1 1 107 4 170077451 170077469 GAGAAAGTACTCGGGAACC 57 170075639 170075660 CCCATGTTGACAGTTTATATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 3 1 1 69 4 181524898 181524916 ATGTCGGTGACATCCACAG 60 181524172 181524190 TAGTGCCTCTTCTCTTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 1 1 1 60 15 30870085 30870103 CAGAAGCCTGGAAACTCAG 58 30868133 30868151 CCTCTTGAGGACACTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 2 1 1 61 15 30870083 30870101 GAAGCCTGGAAACTCAGAG 58 30868130 30868148 GAGCCTCTTGAGGACACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336 2 1 3 84 1 47513715 47513733 CCTTTGTCCAAAGCTGGAC 59 47513781 47534077 CGTGAACACCTCTGTTCCT 60 Novel Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 2 1 1 60 15 52501670 52501688 GAGCCATGTAAAGGGAAGG 58 52502260 52502278 GCCTTCCATCATAACTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 3 1 1 107 15 84004987 84005005 TTCAGAAGGTTTCTGCTGC 58 84009915 84009933 GTCTCTGTGCTTCCCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 2 1 1 116 3 3955837 3955855 CTTCTTAGCCTGGCCAGAG 60 3956370 3956388 GGGAAAGAGGTTAGGTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088122 2 1 2 85 15 87456925 87470767 GATGGAAGAGATGCAAGCG 59 87456858 87456876 CAGTCAAACCTCACAGAGC 59 Novel Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 3 1 1 72 15 105845853 105845877 GAATAGGGCTTACATAGACATAGAC 59 105849426 105849444 TTCATGGACGTTTGGTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 2 2 3 90 11 27575828 27575846 AAAGGAGAAGTCAGTGGGC 60 27575898 27576283 ATATGATTCATTGCTGGCTGG 59 Novel Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 1 1 1 60 3 25350841 25350859 GGAGAGTTTGACTGTGCTG 59 25335840 25335860 CTTTGGAACAACTCGTTTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 2 1 1 60 6 110258848 110258868 AGATGGTTGGAGAACATTCTG 58 110258296 110258314 AGGACAGCATCAGTTAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 2 1 1 60 1 108840491 108840510 GGCTACTGTCAAGTAACCCA 60 108840346 108840368 AGTTCTTTACAGACTGACTGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000086332 2 1 2 80 9 604413 604437 CCTTAGGTTCATTTATGAGACTGAG 59 604263 604375 AAGCCATTGATGATGCTGC 59 Novel Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 3 1 1 63 3 53506044 53506062 AGAAATGTCAATCCGCTGG 58 53444349 53444367 ATCCCTGATTGCTTCCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112 1 1 3 86 6 125304523 125306512 ATGGACAAACAACAGACGG 58 125304455 125304473 TTAGCCACCACTCATAGCC 59 Novel Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 1 1 1 140 11 72450133 72450152 CCTTGACCCAATCTGAAGAG 58 72450606 72450624 GAAGCTTCTGAGTCACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 2 1 1 61 3 71664832 71664852 GTATGACAAATGCTGCTTTGG 59 71666555 71666573 AACAACTGAAGGCTTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 2 1 1 78 6 141112600 141112621 GACTGCTAAACATGAAGTTGAG 58 141112437 141112455 AGCTGTACTTCACACTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 1 1 1 67 9 4621520 4621539 CCTCAGTAAACCCACTTTCC 58 4622742 4622760 TCTGGGCCACAGTAAAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 3 1 1 66 16 17139385 17139403 ATTGGAGACAGTTCTGGGT 58 17138136 17138154 TTACAGTGTGCTACACGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 3 2 3 65 3 142297287 142297305 CAACAGCTTCTGGTACCCA 60 142293156 142293175 GCAAACTGGAAGGTACATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 3 1 1 105 12 33221226 33221244 TGGATCACATCTGTCGCTG 60 33231343 33231361 GTCAAGTCTCAGGGACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 2 1 1 144 16 51791833 51791851 CTACGCACCAATGTCTCTG 58 51790974 51790993 GCGAACACTAAATGGAATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 1 2 2 81 1 200364479 200364500 TGTAAAGTCACCAAGATTGCTG 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 2 1 1 70 9 59448121 59448140 GCCTTCCTGTTCATAGTCAC 58 59450900 59450919 TATCTTCCATAGCTTGCCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 1 1 1 60 X 21946874 21946892 GCCAAATGGGTCATTTCAC 58 21946373 21946391 AAACGTGCTGAGAAATCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 2 1 1 73 16 82332005 82332023 CTTCATTGTGGACATGGCT 58 82331607 82331625 CACGAAGACAAGCCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 3 1 1 88 7 24031881 24031899 CTTGATTCACGTGGGTCCT 60 24034094 24034113 GTAAAGGCTACCACAGTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 1 2 3 86 17 20998251 20998269 AGCTCTCCCTATTTCTGGT 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 1 2 2 80 7 75853235 75853943 CAGAAAGATTCTGACAGGAATGAG 60 75853980 75854000 ATACGGTTTCCACATTGACAG 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 80 19 38366013 38366032 AGTGAGACCAAGAAGACTGG 59 38365658 38365971 GGCTGTAACATTCAGAACGA 58 Novel Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 2 1 1 64 10 15170424 15170442 ACTGACCTACGATTGGCAG 60 15175426 15175444 AACTGGTGTTGAGAAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 3 1 1 60 10 16236008 16236028 TTGGAAGAAAGATACGTTGGG 58 16236409 16236431 CGTCTTCTTTCTATCTTGTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 3 2 2 81 10 35049329 35053147 CAGACAATGACAGACCTTCC 58 35049267 35049286 TCTGTTCTCTAAGCCAGGAG 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 1 1 2 92 4 105158 105176 CATGCACAAACCAAAGGGA 59 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 3 1 1 61 20 6392803 6392822 AAGAATTCAGCTCTGGACTC 57 6394604 6394622 CTGGAGTCTGTGGGTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383 1 1 2 80 4 5724000 5734562 TATTCCGTCATGTATTGCCA 57 5723939 5723958 TCATCAACTCCTCTCAACAC 57 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 1 1 1 60 8 81635477 81635495 ATTACTAGATGCCCTGGCG 59 81490660 81490678 TGGAATCAGCAACTTGTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000078712 2 1 2 80 4 68437736 68440078 AACCTGAAGGTTGCTACCA 59 68440120 68440140 CTTTGAGTAGATGTCCCACTC 58 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 1 1 1 85 8 129157622 129157640 GAACCTAAGTCGGAGGCAG 60 129156219 129156240 TCTGAGAAACCATGTGATACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 3 1 1 81 7 143620335 143620355 TATCTCACCTCAAATCTGCAG 58 143625186 143625204 TCTCTTCCTGCCTTTCGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 3 1 1 85 2 102164297 102164315 TTAACTGCTGAGCCATCTC 57 102154153 102154173 ATCAATAAGCCAGATCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 2 1 1 75 1 281314665 281314683 AAATGGAAGTTACCCAGCC 58 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 3 1 1 158 2 139942286 139942304 TAGCTCCAGGTTTGCTGAG 59 139945276 139945296 ATATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 1 2 2 80 2 254033890 254034509 ATCTTGATCAGGAACTGACTACC 60 254034549 254034567 TTAACTCTCGCTTCGCCTC 60 Novel Rattus norvegicus 81 Mt-atp8 ENSRNOG00000033299 ENSRNOT00000046201 3 1 1 104 MT 7848 7866 CAAACCTTTCCTGCACCTC 59 7930 7952 GGGTAATGAAAGAGGCAAATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-cytb ENSRNOG00000031766 ENSRNOT00000042098 3 1 1 60 MT 14430 14450 GGACGAGGACTATACTATGGA 58 14469 14490 GAATGATCCCAATGTTTCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir30c-1 ENSRNOG00000035567 ENSRNOT00000053690 1 1 1 60 5 139699930 139699951 TGTGTAAACATCCTACACTCTC 58 139699891 139699909 AGTAAACAACCCTCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499530 ENSRNOG00000031115 ENSRNOT00000049679 1 1 1 103 2 48966184 48966202 ATTCTGGGAGCAACATGAC 58 48966268 48968456 CAACTGTGATCCAAGATCGT 58 NA Rattus norvegicus 81 AABR07013086.1 ENSRNOG00000023365 ENSRNOT00000036228 1 1 1 90 2 222793387 222793405 CTGAGGACCAGGTTGTCTC 59 222793456 222793505 TTGTCATACTTGAGAGCAATGC 59 NA Rattus norvegicus 81 Fyb ENSRNOG00000013886 ENSRNOT00000018634 3 1 1 80 2 55958826 55958849 GGAGAAGAAGTTTACGATGATGTG 60 55958885 55961506 TCCAACACTCATACCTTGACTC 60 NA Rattus norvegicus 81 AABR07018028.1 ENSRNOG00000031618 ENSRNOT00000028062 1 1 1 103 15 36417781 36417801 TCATGGATGAGAATTCTGGGA 59 36417328 36417718 AGTGACAATTATCTTGCTCCC 58 NA Rattus norvegicus 81 LOC100365012 ENSRNOG00000049037 ENSRNOT00000052052 2 1 1 60 20 1165475 1165493 GTCCACATATTCTCCACGG 58 1165516 1165535 AGAAGACCTTAGACCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2a ENSRNOG00000000852 ENSRNOT00000001133 1 1 1 80 20 5140379 5140482 CCATCTGGAAGGTCCTTCTC 60 5140318 5140337 CTGAGTCCGGAATACTCCAC 60 NA Rattus norvegicus 81 Ggnbp1 ENSRNOG00000000486 ENSRNOT00000000577 2 1 1 80 20 5620419 5621882 AATTGACTTTGGAGACCTCAG 58 5621923 5621942 TGTTTGTACAAGCCAAGGAG 59 NA Rattus norvegicus 81 Kcnj15 ENSRNOG00000001656 ENSRNOT00000002259 1 1 1 82 11 35580355 35584104 CCTACAGAGTGGTCCAAGG 59 35584150 35584168 CATTGCTGTGCTTCACCAG 60 NA Rattus norvegicus 81 Stoml1 ENSRNOG00000008530 ENSRNOT00000011383 2 1 1 91 8 63038834 63040465 CTCTGAAGATTGTGCCCAC 59 63040520 63040538 CAAGAGAAGAACCATGCCA 58 NA Rattus norvegicus 81 Il10rb ENSRNOG00000028638 ENSRNOT00000061345 3 1 1 80 11 31577360 31581513 TCAAGGAGTTTCTGAGTCACC 60 31581555 31581573 CGAACACTTCGGTTTCGTC 60 NA Rattus norvegicus 81 LOC100365810 ENSRNOG00000045885 ENSRNOT00000073068 1 1 1 60 8 105088123 105088141 GGTCTCAGCCCTAGATCAG 59 105088081 105088101 CTTCAGCATTTCCTTGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbrg1 ENSRNOG00000023850 ENSRNOT00000039729 2 1 1 80 8 40122266 40122286 AGAACCAGAATGAGAAGTACC 57 40120253 40122224 CAGCAGCATTCTCAAACAC 58 NA Rattus norvegicus 81 Tbrg1 ENSRNOG00000023850 ENSRNOT00000039729 3 1 1 80 8 40122265 40122285 GAACCAGAATGAGAAGTACCG 59 40120252 40122224 ACAGCAGCATTCTCAAACAC 60 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204,ENSRNOT00000063943 2 2 2 80 15 40542411 40542429 TTGGAACAGGACTCTTTGG 57 40540160 40542369 ATGTAGTAGCTGTTGTTCCTG 58 NA Rattus norvegicus 81 Hcn1 ENSRNOG00000055382 ENSRNOT00000089218 3 1 1 80 2 50399665 50429809 CAAGAGAAGTACAAGCAAGTAGAG 59 50429845 50429866 GTAATCATGTATCTTCTGGCGC 60 NA Rattus norvegicus 81 RGD1562683 ENSRNOG00000042967 ENSRNOT00000065810 2 1 1 82 11 33757998 33758016 GAAAGCAGCTACTCTGAGC 58 33748099 33757952 CTGAAAGTACGCAGTCAGC 59 NA Rattus norvegicus 81 Bckdhb ENSRNOG00000009928 ENSRNOT00000013249 2 1 1 81 8 91464437 91474654 CTTCAGTATGGGCAAACTCAG 59 91474696 91474715 TAGGGTCTTTGGCCAATGAG 60 NA Rattus norvegicus 81 LOC680520 ENSRNOG00000027997 ENSRNOT00000033716 3 1 1 81 11 44072699 44074142 CCAACGTTAGAGAAGGTTGAC 59 44074184 44074203 ATGTTCGTTCCATCTCCTGG 60 NA Rattus norvegicus 81 LOC100910402 ENSRNOG00000060027 ENSRNOT00000083497 1 1 1 60 2 35416592 35416611 CTATGATCGCTATGTTGCCA 58 35416551 35416572 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1531 ENSRNOG00000045748 ENSRNOT00000075303 3 1 1 60 11 43194918 43194939 CCATCTCTTAATGGATTGGTGG 59 43194957 43194978 CAGAGGTACTGATTTGTATGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 2 2 2 100 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549978 34549997 TGGAATCGGAAGCTGTAGAC 60 NA Rattus norvegicus 81 Hmgn1 ENSRNOG00000048226 ENSRNOT00000075126 1 1 1 95 11 39482929 39485177 CGGGAAAGGATAAAGCATCAG 59 39485234 39485252 CTGTAGTTTGCTGGTCAGC 59 NA Rattus norvegicus 81 Olr1539 ENSRNOG00000047514 ENSRNOT00000040089 2 1 1 60 11 43309850 43309872 TCTTCATCATCTACCTCATCACC 60 43309891 43309910 TTCCAGATGAGAGCGATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 2 1 5 81 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26448478 26448498 CCTGGTACCACTTCATAGGAG 59 NA Rattus norvegicus 81 Dusp14l1 ENSRNOG00000046368 ENSRNOT00000074141 1 1 1 60 2 140836258 140836280 CCCATTAGACTGTACTTTGACAC 59 140836299 140836318 CATGCTTCTTGCTTACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 2 1 1 80 X 23677446 23680117 CTGTGTCCAGGTGTGAGAG 60 23680160 23680179 CAAGGACAAGCATAAGTGGC 60 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629,ENSRNOT00000085690 3 2 2 80 2 188301063 188301083 AGAAAGCACAAATTGTAGCCC 60 188301122 188308319 CTGGAAGGAATTCCATTCACTG 59 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000015502 ENSRNOT00000020907 2 1 1 80 2 219664444 219664464 TGTCTAGCATCACCTTTCCAG 60 219663613 219664402 TTCCCTGAACAACACCCTG 60 NA Rattus norvegicus 81 Abca4 ENSRNOG00000012892 ENSRNOT00000017878 1 1 1 80 2 225776681 225779394 CACCTCAAGTACAAGTTTGGA 58 225779435 225779454 CAAATCAGGAAGCAAGTCGT 59 NA Rattus norvegicus 81 RGD1565566 ENSRNOG00000042547 ENSRNOT00000068694 1 1 1 60 1 61553665 61553684 GTGAAGAACTTCGGCATCTG 59 61553707 61553725 GGTACATGTTGTGAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1329 ENSRNOG00000060221 ENSRNOT00000078003 1 1 1 60 8 43781997 43782016 CACTCTTCTCCCTGTTTCTG 58 43782039 43782057 ACTAAGCCCAAGTTTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360446 ENSRNOG00000019884 ENSRNOT00000026979 1 1 1 60 1 199654866 199654884 CAAGTGCAGGAATTGTGGG 59 199654824 199654843 GCTTTGATGGTGAATGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map4k2 ENSRNOG00000021061 ENSRNOT00000064798 2 1 1 80 1 221713914 221713935 ATATGTTTCCAGACACCATCCA 60 221713974 221714098 CTTGGTGAAATTGGATCTCGG 59 NA Rattus norvegicus 81 Vstm2b ENSRNOG00000017456 ENSRNOT00000023671 3 1 1 88 1 97634219 97634237 GTGGTGGTACCTCAAGGAG 59 97634286 97635344 CCTTATTTGTTACCTTGCTCCG 60 NA Rattus norvegicus 81 AABR07006267.1 ENSRNOG00000050024 ENSRNOT00000072135 1 1 1 80 1 227592728 227592749 TGGATTCACATTCATGGAAGAG 59 227592790 227595212 TCACAATCTGCACAATCCC 58 NA Rattus norvegicus 81 Abcd3 ENSRNOG00000011929 ENSRNOT00000016739 1 1 1 80 2 225345848 225345961 TTATGTTCCTCAGCGACCC 60 225345786 225345807 TTCTGATCCTCCTTTCCATCTG 60 NA Rattus norvegicus 81 Dppa3l1 ENSRNOG00000022376 ENSRNOT00000036219 2 1 1 60 8 60683603 60683622 CATCAGAGAAAGTCAACCCA 58 60683562 60683581 CCCTCTTCGTCTTTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11a ENSRNOG00000015003 ENSRNOT00000020229 1 1 1 81 1 141478603 141478621 TCTAAGGCTGGCAAAGAGG 59 141476161 141478558 GTCTGAACCATTTACGGCC 59 NA Rattus norvegicus 81 Ccdc66 ENSRNOG00000028380 ENSRNOT00000039311 2 1 1 80 16 3116337 3117423 TAGAACACCAGAAAGCAATCAC 59 3116278 3116298 CCTTCCTTCTCTGTTCTTCCT 59 NA Rattus norvegicus 81 AABR07033979.1 ENSRNOG00000042474 ENSRNOT00000052182 3 1 1 92 11 46739119 46739138 AAACTCCGGCTTCTAGTACC 59 46739191 46739230 TGTGAGAAGCATCATAGAGGT 59 NA Rattus norvegicus 81 Rn60_X_0594.2 ENSRNOG00000051340 ENSRNOT00000076621 2 1 1 60 X 58520222 58520242 ATGAAGTCCTCCATCTTCCTG 59 58520263 58520282 GTGTGCTTTCAGATGCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.2 ENSRNOG00000051340 ENSRNOT00000076621 3 1 1 60 X 58518422 58518440 CTTCTTCAGGTTCCCACAG 58 58518462 58518482 TCTCCTACAATTCTCAACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 3 2 2 84 2 30335904 30335922 GTGCTCAGACAGATACCGA 59 30334425 30335859 CCACTGTTTCTTCTCCTTTCTC 59 NA Rattus norvegicus 81 Gys1 ENSRNOG00000020812 ENSRNOT00000028271 1 1 1 80 1 101442428 101442446 CATCTCCACGAACCTCTCC 60 101442488 101442588 AGAATGTAAATGCCGTAAGCC 59 NA Rattus norvegicus 81 Map3k11 ENSRNOG00000020773 ENSRNOT00000028185 1 1 1 80 1 221044282 221048607 GAAGTCCAACAACATTCTGCT 59 221048644 221048667 CCAAAGTCAGTAATCTTTAGGGTC 59 NA Rattus norvegicus 81 Pkd2l2 ENSRNOG00000025489 ENSRNOT00000037690 2 1 1 80 18 27193917 27193936 CACTTCTCTACCTGATGACG 58 27193979 27195740 GGTCCTTCCATGAACTTCC 58 NA Rattus norvegicus 81 LOC100911361 ENSRNOG00000051193 ENSRNOT00000076198 2 1 1 60 2 121130608 121130626 CACGATCCAAAGGAACCAG 59 121130566 121130585 TTTCAAAGCTCAGACCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC127217.3 ENSRNOG00000051586 ENSRNOT00000088386 2 1 1 60 1 172464645 172464663 TATGTGATGCCCAAGTCCA 59 172464603 172464622 TGTAGAACACAGAAACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct3 ENSRNOG00000019090 ENSRNOT00000025824 3 1 1 80 2 187684254 187685112 AAGGAGAAAGCCAGACTGAC 60 187685151 187685173 GGATGTACTCTTCTTCCATTTGC 60 NA Rattus norvegicus 81 She ENSRNOG00000020797 ENSRNOT00000028225 3 1 1 84 2 189185504 189187705 CCTGTCAGTCCAGTTTGAG 58 189187753 189187771 CTTCAAGGTCTTCTGCCAG 58 NA Rattus norvegicus 81 Mpzl1 ENSRNOG00000003248 ENSRNOT00000004376 2 1 1 81 13 83815974 83816945 GTGGAAATAGACAACCTGCTG 59 83815913 83815931 GTAGAGTGAGCCCAAGGAC 60 NA Rattus norvegicus 81 Lmbrd2 ENSRNOG00000054751 ENSRNOT00000077646 1 1 1 80 2 58544390 58544408 TTCCAGATGGAATCATGCC 58 58544450 58555297 TGAAAGGTAACAGAATCCACG 58 NA Rattus norvegicus 81 Rdh13 ENSRNOG00000027919 ENSRNOT00000031462 2 1 1 80 1 72956213 72957040 GCTGCTCAAGGACTATGTC 58 72957084 72957102 GCTCCTGTCACGATAACAG 58 NA Rattus norvegicus 81 AABR07020847.1 ENSRNOG00000049403 ENSRNOT00000073921 1 1 1 82 13 43514571 43514589 TACATTAAGGCACTGGCAG 58 43494703 43514527 TTCTTCAGATCATAGGCTGTC 57 NA Rattus norvegicus 81 B4galnt3 ENSRNOG00000010344 ENSRNOT00000036721 1 1 1 80 4 152742741 152742761 CACAGACTATAGCAGTGAGGA 59 152742464 152742701 AGTTTCAGGTACTGGTAGCTC 59 NA Rattus norvegicus 81 Rn60_6_0026.1 ENSRNOG00000015559 ENSRNOT00000020833 1 1 1 60 6 2557320 2557338 GACCAGAGACAAAGCAGGA 59 2557278 2557296 CCAGCAGCTTTCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox14 ENSRNOG00000022084 ENSRNOT00000034277 2 1 1 62 8 108109187 108109205 GACTACAAGTACCGGCCTC 60 108109143 108109166 GAAGACATACCTGTCTTTCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 2 1 1 94 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524337 28524355 GGGACATATCAGGGAGCTG 59 NA InUTR Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 1 2 2 80 2 263401296 263476779 GAGTGGTCGTGAACTTTGC 60 263476822 263476841 ATCTTATCAGTCCACTGCGT 59 NA Rattus norvegicus 81 Flrt1 ENSRNOG00000022428 ENSRNOT00000030625 1 1 1 60 1 222349900 222349920 CCCTCTACTTACAGAACAACC 58 222349860 222349878 TTGGTCTTGAGGTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp954 ENSRNOG00000022742 ENSRNOT00000042086 1 1 1 80 1 69856265 69856283 GATGACTCTCAAAGGCTCC 58 69856326 69857412 AGAAAGTTCAAGTCTCAGGG 57 NA Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 1 1 1 75 2 182726657 182726678 GACAACGACATAATGGAAACTC 58 182730107 182730128 TGATGTAGGTTATCTCCTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 Sptlc1 ENSRNOG00000010882 ENSRNOT00000014546 1 1 1 80 17 11890139 11892287 GGAGATTGTAGAGCAATGCA 58 11892330 11892348 GGAAGGCACTTCTCTTCCT 59 NA Rattus norvegicus 81 Rn60_X_0616.3 ENSRNOG00000032361 ENSRNOT00000051547 1 1 1 80 X 60929658 60929677 CCTTTCTGGAACACATGTGG 59 60929720 60929750 AGACTAGGAAGCAGATGCC 59 NA Rattus norvegicus 81 Mzb1 ENSRNOG00000022009 ENSRNOT00000036301 3 1 1 82 18 28437584 28437602 CAGGAGCTGAGTGAATCCA 59 28437202 28437540 ACTTCTTGGACTCCATAGGAC 59 NA Rattus norvegicus 81 Abca13 ENSRNOG00000025645 ENSRNOT00000035612 3 1 1 80 14 89485418 89487595 CTGCAGAGTGTAAATTTGTTCC 58 89487633 89487654 TCTTGTTCATCCAGGTAAAGAC 58 NA Rattus norvegicus 81 Olr180 ENSRNOG00000033813 ENSRNOT00000047978 3 1 1 60 1 169856210 169856229 TTTCTCCTCCTGAGACTACC 58 169856169 169856189 GCTCACAATAAGTATGAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd18 ENSRNOG00000027091 ENSRNOT00000029879 1 1 1 166 9 64905114 64911594 TCAGGTGATCTGACAGGAG 58 64865034 64865052 TATCTCGCATCTCCTCTGC 59 NA InUTR Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 1 7 7 80 11 46341088 46341109 AGAGCCGAAGTATCTGATAGTC 59 46336075 46341047 CGAGTGCGAGATTTACCTG 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 3 2 5 80 1 87656302 87656324 GCCATCAGTAATTTCACTACTGG 60 87656362 87656507 GACAGCAAATCTGGATACCAC 59 NA Rattus norvegicus 81 Tbc1d10a ENSRNOG00000006394 ENSRNOT00000008788 2 1 1 80 14 84443950 84443969 AGTATGAAACCATCGAGCAG 58 84444011 84444576 ACTCTATCACCTCCTGAACC 58 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 3 2 2 83 9 63564834 63564852 ATGCCTTAAAGGAGCTGCT 59 63558401 63564790 TGGATGAAATCATACTCTGGGA 59 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146,ENSRNOT00000085079 3 2 2 147 X 14910101 14910670 ATATGCAAGGCCTTCCAGG 60 14909671 14909690 AAACTGGTTGGTTCACTGTG 59 NA Rattus norvegicus 81 Tle3 ENSRNOG00000013013 ENSRNOT00000018467 3 1 1 80 8 66327533 66331410 TCCAGCACGAACAATTCTG 59 66331454 66331472 CATGCTGTAGTCTGCAGAG 58 NA Rattus norvegicus 81 Them5 ENSRNOG00000043445 ENSRNOT00000066020 3 1 1 81 2 195584043 195584061 CCTCCTTCAAGTCCAACAG 58 195584106 195585029 CAGTCCTGTTTGTCTGAGG 58 NA Rattus norvegicus 81 Vps52 ENSRNOG00000000470 ENSRNOT00000000549 3 1 1 80 20 5435889 5435908 TGTATCCACATCGTTCTCCG 60 5435516 5435846 CACCTGCTCCCAGTATCTG 60 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 1 2 2 82 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347595 CTCCTTGTCCCTTCAATACAG 58 NA Rattus norvegicus 81 Zfyve19 ENSRNOG00000012528 ENSRNOT00000016854 1 1 1 80 3 111020316 111020334 ACTATCACCTCCCAGACAG 58 111020378 111021057 CTTCTTCAGTGAGCTGCTG 59 NA Rattus norvegicus 81 Vom1r100 ENSRNOG00000055950 ENSRNOT00000085924 2 1 1 81 4 122006891 122006915 GTCACTATGACATGCCTTATATCTC 59 122006952 122008182 TATATGAGAACAGTGGCTGCT 59 NA InUTR Rattus norvegicus 81 Insrr ENSRNOG00000057702 ENSRNOT00000080693 3 1 1 80 2 187179264 187180469 TTGTCCAATTCAGCTACAGGA 60 187180511 187180529 AGGATGTGGACGAAAGTCG 60 NA Rattus norvegicus 81 AABR07002094.1 ENSRNOG00000046802 ENSRNOT00000072667 2 1 1 60 1 66389688 66389709 CATTGGCTGATTACCATGTCTG 60 66389730 66389748 CAAAGGGACTGAGTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 3 2 2 80 1 205715612 205715632 CTAGTTGGTTCTAACATGCCT 58 205715672 205716339 TGGTTTGTTGTTATCCCTGAG 58 NA Rattus norvegicus 81 Rimkla ENSRNOG00000008625 ENSRNOT00000011586 2 1 1 81 5 138521794 138523768 GCAACTGCTTTCTAGGTGG 59 138521731 138521749 ATGTTGGACACCTGGATCG 60 NA Rattus norvegicus 81 Defb42 ENSRNOG00000038762 ENSRNOT00000059215 1 1 1 67 15 46166313 46166332 AGACTGTATCTGCTCCTCTC 58 46159704 46166283 AAACCACTTCTAACTCGGG 57 NA DesignRelaxed Rattus norvegicus 81 RGD1562161 ENSRNOG00000005135 ENSRNOT00000006867 2 1 1 80 X 38331090 38331108 AAAGCTTCCCTCAGTCACC 60 38330559 38331049 GATCCTCTGGATACCTCTTCTG 59 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 3 2 2 81 1 167522444 167522748 TTAACTGCTAAGCAGGCAC 58 167522793 167522811 AGAGGATCTCGATCTGCTG 58 NA Rattus norvegicus 81 LOC100359656 ENSRNOG00000029090 ENSRNOT00000051511 2 1 1 60 X 77809040 77809061 GTAAGGAATGTTAGATGTGCCA 59 77809082 77809100 CGATACTTACAACAGCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gga2 ENSRNOG00000018599 ENSRNOT00000025309 3 1 1 80 1 191966415 191966433 AGACTTCTCAAGAGCAACC 57 191965903 191966371 TTCTTGTTCCTCCTTGACC 57 NA Rattus norvegicus 81 Aox1 ENSRNOG00000015354 ENSRNOT00000068633 1 1 1 80 9 64957291 64958256 AAGACTTTCTGTAGAGCTTCTG 58 64958294 64958315 CGATCCATTTATTCCTTGATCC 57 NA Rattus norvegicus 81 Grem1 ENSRNOG00000026053 ENSRNOT00000037895 3 1 1 137 3 105206970 105214861 GAGGTGACAGAATGAATCGC 59 105206852 105206870 CATTGTGCTGAGCCTTGTC 60 NA InUTR Rattus norvegicus 81 Clca4l ENSRNOG00000036877 ENSRNOT00000055362 1 1 1 80 2 250800334 250802098 AAGCAACAAGGTGTTCTACTG 59 250800274 250800293 ACTTTCTTGTCACGCAACTG 59 NA Rattus norvegicus 81 LOC100911800 ENSRNOG00000045908 ENSRNOT00000065330 1 1 1 174 20 5283090 5283200 TCACTGGGAAATGCAGGAG 60 5282934 5282953 CTCCACAGTTACTCACAGGG 60 NA InUTR Rattus norvegicus 81 Vwc2 ENSRNOG00000049076 ENSRNOT00000071558 1 1 1 118 14 91204122 91227377 GAGGAGTTCGTGGTGTCTC 60 91227459 91227477 TGATCAGGCTCATACACGG 59 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 1 2 3 65 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569123 2593682 TTGCGAATCCTAAGGAGGT 58 NA DesignRelaxed Rattus norvegicus 81 RGD1566320 ENSRNOG00000036971 ENSRNOT00000055588 2 1 1 87 3 138765176 138766038 CCGAAGATGTCAGACTATGG 58 138766086 138766106 TCGCTAAATCAGAGTCTTCAC 58 NA Rattus norvegicus 81 Mir3560 ENSRNOG00000036567 ENSRNOT00000054671 3 1 1 79 X 16117947 16117965 CAGACCAGGCTTACCTTCC 60 16117886 16117905 TAATCCTTTGTCCCTGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Retnla ENSRNOG00000001955 ENSRNOT00000002676 3 1 1 80 11 54545133 54545153 CCAGTGAATACTGATGGAACC 59 54544626 54545093 GGGATAGTTATCTTGATGGGC 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000086426,ENSRNOT00000090139 1 3 3 80 8 90936511 90937401 CACAAGCTGAAGGAGAAGG 58 90936449 90936468 TTTCTTTGGAGAGGACTTGG 58 NA Rattus norvegicus 81 Dcbld2 ENSRNOG00000055281 ENSRNOT00000084060 3 1 1 80 11 44256692 44256710 TGTGATTAGCAAAGGCACC 59 44255551 44256651 CTCGTAGATAAGTATCCCACCA 59 NA Rattus norvegicus 81 LOC100911721 ENSRNOG00000050201 ENSRNOT00000071891 3 1 1 80 1 220310762 220310780 TACCTGACCAAGAAGCCTC 59 220310823 220311643 CCCATTCTTCTCATCAGCTC 58 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 1 2 3 64 X 62367014 62367032 TTCACCAGTTACCAGCTGG 60 62367060 62367078 AAGACGTCAGGGTAGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578,ENSRNOT00000087578 2 3 5 156 7 115767352 115767370 GGAGAAGCTGGAGACACTG 60 115775908 115775926 ACAAGGACCACAGTTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Morc1 ENSRNOG00000032101 ENSRNOT00000046330 3 1 1 80 11 55027213 55027231 GATAACGGAACACTGCAGG 59 55018661 55027169 GTCTGAAGCTTCATCAGGG 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 1 2 2 80 17 38996322 38998090 CGAATGACCTCGTTTGAAGAG 59 38998131 38998150 CACTAGATGTTGCAGAGGGT 60 NA Rattus norvegicus 81 Pole ENSRNOG00000037449 ENSRNOT00000067453 3 1 1 80 12 52443705 52443724 TCTCAAATTCCCTGATGCTG 58 52442951 52443663 TTAGTGATGAGGTAGCCCTG 59 NA Rattus norvegicus 81 Usp29 ENSRNOG00000015956 ENSRNOT00000055721 2 1 1 80 1 69995418 70003525 TAGAAACCTGGGACTTGGG 59 69995356 69995374 ATGAGGTTGAGTCCTCGTC 59 NA InUTR Rattus norvegicus 81 Serpinb13 ENSRNOG00000028194 ENSRNOT00000031789 1 1 1 80 13 27051124 27061746 GATGGCCTAGAGAAGATAATCGA 59 27061786 27061804 CCTTTGCTTCAGTTGTCCG 60 NA Rattus norvegicus 81 Dand5 ENSRNOG00000033368 ENSRNOT00000044133 1 1 1 81 19 25930835 25935725 TTGTTCAGGTGATCTCCAGG 60 25930773 25930791 TAGAAGGAGGAACAGTGGC 59 NA Rattus norvegicus 81 Ddx18 ENSRNOG00000025430 ENSRNOT00000037203 1 1 1 80 13 37530130 37530389 GAAGGCAGGGATCTTCTGG 60 37530068 37530086 AATGAGCTCGATCACAGGG 60 NA Rattus norvegicus 81 RGD1561206 ENSRNOG00000016331 ENSRNOT00000021855 1 1 1 60 1 195440929 195440948 ACTGACTGTACTGCTTTACC 57 195440888 195440906 AAAGTGTGCTGAGAACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg5 ENSRNOG00000005250 ENSRNOT00000007174 1 1 1 80 6 7943365 7943383 GTCAACAGCATAGTGGCTC 59 7938363 7943324 GGGCATTTCTTCTATGTTTCTG 58 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248,ENSRNOT00000084662 1 2 2 124 2 148774512 148774944 CTCCCTCAACCAATTTATAGACAC 59 148775027 148775045 CAGATGCTAGGAGCTTGCA 60 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248,ENSRNOT00000084662 3 2 2 196 2 148774512 148774944 CTCCCTCAACCAATTTATAGACAC 59 148776983 148777003 TGGTTCTCAATCATGTTGCTC 59 NA Rattus norvegicus 81 Mob4 ENSRNOG00000014980 ENSRNOT00000020536 1 1 1 80 9 61736875 61736893 ACTCAGATGACAGCAACTG 58 61736935 61739767 ATAATCTATGGCAGGACACTC 57 NA Rattus norvegicus 81 Dph6 ENSRNOG00000037356 ENSRNOT00000056522 3 1 1 80 3 106130819 106133655 ATGACAACCAAGTGGAGTC 57 106130757 106130775 CAGCATACAAGTCAATGGC 57 NA Rattus norvegicus 81 aicda ENSRNOG00000015478 ENSRNOT00000020762 3 1 1 81 4 155359945 155359965 AAGCTCCCTTTGACCTAAGAC 60 155360007 155365960 TTTGCTTCATCAAGAGGCTG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0631.1 ENSRNOG00000051031 ENSRNOT00000076130 2 1 1 60 X 62457082 62457100 CCTGGGTCCTAAGTCTGTG 59 62457040 62457059 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B9d2 ENSRNOG00000028753 ENSRNOT00000028029 1 1 1 60 1 82476563 82476581 CATTGACCTGCACTTTGCT 59 82479121 82479139 CACCTGGAGATGAAGTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 3 3 3 83 20 9835698 9835718 ACCTGAACTACTGGTACAGTC 59 9835763 9835979 CCACGGGAAACATGATCTG 59 NA Rattus norvegicus 81 Pias1 ENSRNOG00000034272 ENSRNOT00000066009 2 1 1 80 8 67809844 67809863 CACAAGAAGATCACTTCCCA 58 67808999 67809801 TAGGTGGAAGGTAACCTGG 58 NA Rattus norvegicus 81 Naaladl1 ENSRNOG00000021000 ENSRNOT00000054835 1 1 1 80 1 221483556 221483744 ATACTATAGCCACGTGCTCTG 60 221483786 221483804 GCCCTAGCATAAGCATTGG 59 NA Rattus norvegicus 81 Hexim1 ENSRNOG00000003203 ENSRNOT00000004272 2 1 1 60 10 91201566 91201585 CAGCCTCAAACTAGCAACTG 59 91201608 91201626 GCTCAGAGTTCTGCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 3 2 2 81 13 27896373 27906539 TCCTTTCGACCTTCAAGGA 58 27906581 27906602 CCTTCAGTGTCTTTAACAAAGG 58 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 3 1 2 114 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099661 91160219 CCCTCCACAGTATCGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 2 1 1 60 1 247473677 247476489 GGAAGATTCACAAACCCAGG 59 247473636 247473654 ACTGAGATTCCCAAGTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Ltbp1 ENSRNOG00000033090 ENSRNOT00000047674 2 1 1 80 6 21448210 21539872 GATACATTCTCAAGTGGCACC 59 21448150 21448168 GGCTTGAGCACATACTCCT 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 1 3 3 80 X 37907294 37907312 TGGGAAGAAGTTACCTCCA 58 37893170 37907252 TAATCCTTGGTCTTTGTCCTG 58 NA Rattus norvegicus 81 Dnd1 ENSRNOG00000016894 ENSRNOT00000022685 3 1 1 82 18 29610145 29610163 GCCCTCTCAAATTGCACTG 60 29609445 29610099 GTGACTGCCCTTCTACCAG 60 NA Rattus norvegicus 81 Vpreb2 ENSRNOG00000001839 ENSRNOT00000002517 3 1 1 60 11 87158404 87158422 CTTCCTTCCTTGGAACCTC 58 87158362 87158381 CCAATGTTATGGTTGCTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910689 ENSRNOG00000046318 ENSRNOT00000072294 1 1 1 80 10 78171100 78172703 AACAGAGATCTATGTGGTACCAG 60 78172739 78172761 CCAATTACTGGTTTGTCAGTAGG 60 NA Rattus norvegicus 81 Sfxn1 ENSRNOG00000018279 ENSRNOT00000024707 2 1 1 80 17 11068183 11068202 ACTGATCCCAGAAACATCCT 59 11065188 11068141 GATTCCTTGCCTGTAATCGT 58 NA Rattus norvegicus 81 Egr4 ENSRNOG00000015719 ENSRNOT00000021097 2 1 1 128 4 117295373 117295392 TAACAGACTCCTGCTTCCTG 59 117295264 117295282 ACATGAGGTTGAAGAGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 3 2 2 80 X 34669392 34671794 TTTGCAGTCATTCACAGATCC 59 34671833 34671854 TCTTGATTTGCTTCTGACAGAC 59 NA Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 3 2 2 80 2 189723648 189725007 CATTACAGGGTCACAGTGTC 58 189725049 189725068 GTGCAATAACACGTTGAGAC 58 NA Rattus norvegicus 81 AABR07029925.2 ENSRNOG00000060650 ENSRNOT00000074380 1 1 1 80 10 60190784 60190802 TGTCTGGTGCTTATGTCCT 58 60151461 60190742 ACAGAATGACAATCTAGCCAC 58 NA Rattus norvegicus 81 Trim41 ENSRNOG00000002388 ENSRNOT00000003246 2 1 1 80 10 34161499 34161519 ACTTAGGAAGCATCTAGAGGC 59 34158405 34161457 TTCATCTGGCTCTTCAGCT 59 NA Rattus norvegicus 81 Ypel4 ENSRNOG00000060130 ENSRNOT00000083592 3 1 1 85 3 72137641 72137984 CCTGTTTAACTCCGTGGTC 58 72138033 72138051 AAATGTCAGCTACCGAGTG 58 NA Rattus norvegicus 81 Paqr5 ENSRNOG00000014164 ENSRNOT00000018988 1 1 1 80 8 66913887 66913905 TGAGTGTTACGTAGCCCTG 59 66909374 66913844 TGGAGTTCAAGAAACCTGGA 59 NA Rattus norvegicus 81 Paqr5 ENSRNOG00000014164 ENSRNOT00000018988 2 1 1 80 8 66921040 66921059 CTCAGCCTCTTCCAAATGAC 59 66917881 66921000 GAACCTCCACATAAAGAACCAG 59 NA Rattus norvegicus 81 LOC100910293 ENSRNOG00000048474 ENSRNOT00000073226 2 1 1 60 2 46067058 46067079 ATATGTTGGGTGTATGACACAG 58 46067097 46067118 GTAACACTCAGAAATGACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmn ENSRNOG00000029860 ENSRNOT00000050660 1 1 1 80 15 35151740 35151975 CTATTAAAGTTGGAGAGTAAGGCC 59 35151683 35151701 ATTTACGTGGTCTTTGCGC 60 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 2 2 2 80 12 19520752 19525973 CATGAGAAACATGGCCCTG 59 19526017 19526035 TGGTGGTAGAATCCAGAGG 58 NA Rattus norvegicus 81 Lrrc15 ENSRNOG00000038539 ENSRNOT00000002348 2 1 1 60 11 74051652 74051672 CCACATCTGTTTCCTCTACCA 60 74051693 74051712 GTTAGATCGGTGTAGTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tapbpl ENSRNOG00000027552 ENSRNOT00000038178 2 1 1 80 4 157741915 157741935 CTTCACAGATTTCCAAGGGAG 59 157741724 157741873 ATCTGTACCAAGTCCACGG 59 NA Rattus norvegicus 81 Psmb4 ENSRNOG00000020979 ENSRNOT00000028484 2 1 1 80 2 196045873 196045892 TATGCTAGGTGCTTCAGGAG 59 196045597 196045830 AGCTCCTCATCAATCACCA 58 NA Rattus norvegicus 81 Clip3 ENSRNOG00000050104 ENSRNOT00000072819 2 1 1 80 1 90965772 90966597 AAGTGCATCAAGTGACAATGAC 60 90965713 90965733 AGTTCTCTGATGCAATGTCCT 60 NA Rattus norvegicus 81 Svs5 ENSRNOG00000013834 ENSRNOT00000018537 3 1 1 107 3 160714570 160715142 CAATAGGCAGGTTGTCCTC 58 160715213 160715231 AGAAGCACGGACTATTTCC 57 NA InUTR Rattus norvegicus 81 Mir542 ENSRNOG00000049278 ENSRNOT00000073411 1 1 1 60 X 158152162 158152183 GATCATCATGTCACGAGATACC 59 158152199 158152222 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1117 ENSRNOG00000049455 ENSRNOT00000049758 2 1 1 60 8 17833065 17833084 TTCTGGAGGGAAGCATAGAG 59 17833024 17833046 CAGGGAAACAACAGATAGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 1 1 1 60 1 198690878 198690898 GAGGGTGAGGAGAAGTATGAG 59 198690920 198700160 CAACCTCCTTGTTGTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910822 ENSRNOG00000046892 ENSRNOT00000049709 2 1 1 60 8 41954685 41954703 TGACATCTTCCCTCTCCTC 58 41954723 41954745 GCTCATAAGCTCATTGACATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 2 1 1 60 1 170072800 170072818 TTTCCTATGCCCTCATCCT 58 170072758 170072777 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC363337 ENSRNOG00000042971 ENSRNOT00000041051 3 1 1 81 19 27861032 27861515 ATCCATGAAGAACAGGCCA 59 27860969 27860988 AATTGACATGACTGCCTCCT 59 NA Rattus norvegicus 81 Olr221 ENSRNOG00000048930 ENSRNOT00000048699 2 1 1 60 1 170988871 170988889 GCAGTGATGTCCTATGACC 58 170988829 170988850 TGATAGTGGAGTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sac3d1 ENSRNOG00000021003 ENSRNOT00000028509 3 1 1 122 1 221484797 221485851 TCTACAACTTGGGTTCCGT 59 221484693 221484713 CATAGTTGTCTTCACGGAAGG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898,ENSRNOT00000086644,ENSRNOT00000011340 1 3 4 80 10 39207954 39210037 GATCCCAGTGAGTTACAAGAC 58 39207894 39207913 GATATTTCGTGTTCGGACCA 58 NA Rattus norvegicus 81 Igsf8 ENSRNOG00000007604 ENSRNOT00000010028 3 1 1 90 13 90693482 90696895 TAATACTTGGAGCCAGGTGC 60 90696948 90696966 CAGGAGATAGAGACAGCGG 59 NA Rattus norvegicus 81 Ceacam12 ENSRNOG00000042158 ENSRNOT00000044927 3 1 1 81 1 79478314 79481725 GTCCAAGTAAACAAACGTGG 58 79481769 79481787 GATTCTTCAAGGTCCTGGC 58 NA Rattus norvegicus 81 Cxadrl1 ENSRNOG00000029029 ENSRNOT00000051939 2 1 1 80 8 106840898 106840916 CACCTATCAGTGCAAGGTG 58 106837911 106840857 CTCCCAAGGATATTAGTGACAG 58 NA Rattus norvegicus 81 RGD1564036 ENSRNOG00000003068 ENSRNOT00000004111 2 1 1 80 10 35701604 35701622 TAAGACACAGCTCTCAGCC 59 35701665 35702229 TGATCCCATTTCCTCTTCCT 58 NA Rattus norvegicus 81 Nefm ENSRNOG00000013916 ENSRNOT00000018637 2 1 1 80 15 44858607 44858627 CGTCATTTGCGAGAATACCAG 60 44857127 44858568 CAGTAGTTTCCTATATGGGCGA 60 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 3 2 2 80 4 176586986 176587092 ATGAGCTTCAGGTGGTAGTG 60 176586925 176586946 AATGATGGATGACAAACCTCAC 59 NA Rattus norvegicus 81 Fastkd1 ENSRNOG00000024335 ENSRNOT00000036585 2 1 1 80 3 55945949 55946606 CATACAGGACTTAAGGGCCT 59 55945888 55945906 AGCAGTCGTTCTTGAAAGC 59 NA Rattus norvegicus 81 Mir105 ENSRNOG00000059896 ENSRNOT00000085343 2 1 1 60 X 152585582 152585601 GTCAAGTGCTCAGATGTCTG 59 152585541 152585560 TAGCACATGCTCAAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562871 ENSRNOG00000033458 ENSRNOT00000050807 3 1 1 60 X 79547164 79547184 GAACATAGCAACAGATGTCCA 59 79547205 79547224 TATTATGAGGTTTGGCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000074338 1 1 2 80 3 134413209 134418090 GAGGAGAAGGAACGTTTGC 59 134418132 134418152 GGTGCTCAGAGAAACATAGTC 59 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000074338 3 1 2 88 3 134413209 134418090 GAGGAGAAGGAACGTTTGC 59 134418142 134418160 GACAGAATGGTGCTCAGAG 58 NA Rattus norvegicus 81 Olr127 ENSRNOG00000034039 ENSRNOT00000045417 2 1 1 60 1 168905124 168905147 CTACAGAACTACCAATATCTCCCA 59 168905087 168905106 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap25 ENSRNOG00000009347 ENSRNOT00000012645 1 1 1 80 4 119285694 119285713 CACAGTCAAAGAAATCGCCA 59 119281666 119285651 TTCTGGTCACTTGAGGCTG 60 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 1 3 3 80 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781872 TCTTGAAGAACACGACTCC 57 NA Rattus norvegicus 81 Olr1280 ENSRNOG00000050953 ENSRNOT00000073657 3 1 1 60 2 115075196 115075214 GTACCCATGCTGAATCCCT 59 115075237 115075256 TCAAGGCAATACTGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca6 ENSRNOG00000046890 ENSRNOT00000073149 1 1 1 80 10 98489744 98491203 CTCTTATGCCTAATACCTTACTTCC 59 98489688 98489709 ATTCTTCCCATACTTCAGTTCC 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 3 2 2 80 20 5530005 5530023 TTCAGACACTCCCAAAGGA 58 5530067 5530180 CTCCCTGAAATGAAACGGT 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 2 2 2 82 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281197 140281216 AAGGTCATGACCAGTTCCTG 60 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 3 2 2 97 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312683 36312702 ATCTGTTCTTTAGCAGCCCA 60 NA Rattus norvegicus 81 Mir125b2 ENSRNOG00000035502 ENSRNOT00000053625 2 1 1 60 8 45746956 45746974 CACAAACCCGTAGATCCGA 60 45746993 45747016 CATACCTATAGACACAAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir125b2 ENSRNOG00000035502 ENSRNOT00000053625 3 1 1 61 8 45746966 45746984 TAGATCCGAACTTGTGCTG 57 45747004 45747027 CCTAACAGACACATACCTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 3 4 4 82 15 51927600 51936380 CCTTCAAACAAGAATGTCGGA 59 51927538 51927556 AGCAAGAGGAAGACAGTCG 59 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 1 1 1 87 12 4267981 4267999 CCTTATGGTCCACTTGGTC 58 4268050 4297605 ATACAGACCTGGGAGTCTC 58 NA Rattus norvegicus 81 Agpat3 ENSRNOG00000001205 ENSRNOT00000001602 2 1 1 81 20 11130073 11130091 CACTCAAGTACCACCTGCT 59 11130136 11131026 TAGATAGCTGCAACCGTCC 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 3 1 2 81 15 5808185 5808342 TATTCAGCAGGTCTTGGTCC 60 5808386 5808404 TCGGTTGAAGGTTCTGGTC 60 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000020774 ENSRNOT00000074580 2 1 1 98 1 87792306 87797515 AAACATAAGAAACAGGTGGCG 60 87797575 87797593 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 AABR07018318.1 ENSRNOG00000021823 ENSRNOT00000038845 1 1 1 90 15 51175094 51175112 TCCTTTGTCCAGGACACTG 59 51175021 51175042 TCCTCATCTTGGAGTCTTGAG 59 NA Rattus norvegicus 81 AABR07018318.1 ENSRNOG00000021823 ENSRNOT00000038845 3 1 1 95 15 51175094 51175112 TCCTTTGTCCAGGACACTG 59 51175016 51175037 TAGTGTCCTCATCTTGGAGTC 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000091442 2 1 2 80 5 154870216 154897626 GCTCTGTAATGTTCAAGAGCA 59 154897667 154897686 TTCCTGTTCCTGACTGTGAC 60 NA InUTR Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 3 1 1 79 3 155103619 155105724 CATTCAGGGCATGTTCGTG 60 155105765 155105785 CGAAGATGATGAGGAACAACC 59 NA DesignNoJunction Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161,ENSRNOT00000056818 3 2 2 80 8 96026551 96026730 CCTGATGTATGTAGGGCGA 59 96026489 96026508 TTAAAGAGGATTCGAGTGCC 58 NA Rattus norvegicus 81 Zbtb38 ENSRNOG00000012386 ENSRNOT00000016625 3 1 1 60 8 104593212 104593234 GATCTGTATTTCCAGTCATGTCC 59 104593174 104593192 CTCTGTAAACACTTCGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla1 ENSRNOG00000028622 ENSRNOT00000033064 2 1 1 80 20 6123404 6123423 CTCCTTCCAGTTCTCCTTGG 60 6123465 6124215 TATTCCTGCAGGATCACCAG 59 NA Rattus norvegicus 81 Golt1b ENSRNOG00000058386 ENSRNOT00000084700 1 1 1 80 4 176615337 176615358 GTGGTTGGCTTTATCAGAAGAG 59 176615396 176617328 GACCTTGTCTACGAATGATCTG 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 2 1 1 80 2 178385309 178385329 TGCTGTACCTCAGATTACCAC 60 178384667 178385270 CTCTCCATATTCACTCCTTCCC 60 NA Rattus norvegicus 81 Oxct1 ENSRNOG00000043094 ENSRNOT00000065313 1 1 1 80 2 53923611 53925390 GATGGCATGTATGCTAACCT 58 53925431 53925451 GAGATGAACAGTCATGTTTGG 57 NA Rattus norvegicus 81 Dupd1 ENSRNOG00000013034 ENSRNOT00000017483 3 1 1 80 15 2796034 2805978 AGACGACCACAGTAAGATCC 59 2806021 2806039 ATCATCAGGTAGGCCAGGA 60 NA Rattus norvegicus 81 Ube2q2l ENSRNOG00000023261 ENSRNOT00000035153 2 1 1 60 X 10771923 10771943 GACAGCTTATATGACTGGCAC 59 10771883 10771901 CGTACAAGGGACTATCGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0009.2 ENSRNOG00000051909 ENSRNOT00000080670 2 1 1 60 20 1505306 1505324 CACCCACTGCTCTATTCAC 58 1505264 1505282 ACCCACTGACCAGAATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 2 6 6 80 1 282683406 282683543 CACCATTCCTATGGTCATGG 58 282683584 282683604 GTATCCTTTAGAACAGCCTGC 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054,ENSRNOT00000036050 3 2 2 80 5 33597812 33599198 ACCTTATGGGTATTTGGTGCT 60 33599238 33599258 GATTTGCAAACAGCACTTCAG 59 NA Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000079061 3 1 2 116 20 1897382 1897401 TCTTCATATCCGGACTCCAG 58 1876758 1897303 GAATGGACAACCTGAGAGC 58 NA Rattus norvegicus 81 Ift57 ENSRNOG00000001958 ENSRNOT00000002684 2 1 1 80 11 53693783 53717225 TATCGCTTGGACACAAACG 59 53693721 53693740 TTCTAGACTCCATTCCGCAG 59 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956,ENSRNOT00000065753 3 2 2 80 7 145101838 145101966 TGGAGCTGAAGAAACTTGTG 59 145102009 145102027 CCATCAATTCTGGCTTGGT 58 NA Rattus norvegicus 81 Cel ENSRNOG00000010406 ENSRNOT00000014572 2 1 1 80 3 7139096 7139115 CCAGGATGATACCTATGGGC 60 7138796 7139054 TCATGAGACACTTGCTTCCT 59 NA Rattus norvegicus 81 Ints4 ENSRNOG00000012552 ENSRNOT00000016770 2 1 1 80 1 162476867 162476889 ATCTCTAACAATATCACCCTCCG 60 162476924 162480861 TCTAATATCCCTGGATGAATCCTC 59 NA Rattus norvegicus 81 Sstr2 ENSRNOG00000002793 ENSRNOT00000003735 3 1 1 119 10 102136554 102141639 AAAGCAAGATGTCACGATAGAC 59 102141718 102141737 AACTGCTCAGAGGTCAACTC 60 NA InUTR Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667,ENSRNOT00000018014 1 2 2 80 9 65334375 65334394 CTGGACAAAGTCATGTCTGC 59 65334437 65336798 CTCCTCACCATCACACCTG 60 NA Rattus norvegicus 81 Cabp2 ENSRNOG00000018339 ENSRNOT00000071109 3 1 1 89 1 219333327 219333909 ATCACAGCAAATCAGTGGTG 59 219333961 219333979 ATCATGTCTGCCGTCTCTG 60 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 2 1 2 87 12 9990046 9990065 TCAAGGAGGACTCACAAGAC 59 9988108 9988425 ACAATCATTGCGCTCTTGC 60 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000008898 2 1 2 124 5 107853571 107853589 TTCCTGGACACGCTAATGG 60 107853388 107853486 TAGATAGGGCTCGCAATATCAC 60 NA Rattus norvegicus 81 St3gal4 ENSRNOG00000009850 ENSRNOT00000013243 3 1 1 80 8 36274416 36274712 ACCAGCAAATCTCACTGGA 59 36274354 36274373 TTCTCGGGAGATGGAATACC 59 NA Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 3 1 1 80 2 225863030 225863048 CAAGCATGGACCCAAAGAG 59 225863091 225865326 CAACAATGGTTCCAACCTGG 60 NA Rattus norvegicus 81 Olr1736 ENSRNOG00000061930 ENSRNOT00000075084 1 1 1 60 20 1765319 1765339 CTTGCTTCACTCTGTAATGAC 57 1765360 1765379 ATGATGGACATGATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 1 1 1 85 1 197677237 197677844 CATCATCCCTCCTCAGGTG 59 197677893 197677911 TATGCATGAAGTCCAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 1 2 2 80 1 100856291 100856309 TAGATGGGACCCTCATCAC 58 100856352 100856456 TCTCTGGGTACAGAATCCTC 58 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 2 1 2 81 20 1814894 1815075 AGTATGAAAGCACTGAGTGTG 58 1814833 1814851 TTCCACTGTGGTACTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 80 12 7530909 7530928 TGGGTATGACAAGGATCTGG 59 7530968 7531335 GCTATATCATCCCAGTGAATGC 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997,ENSRNOT00000018147 3 2 3 80 X 62551587 62556691 GTCATATGTTATCTGTCAGGATGG 59 62551530 62551549 TCCTGTTTCTGCAATTGCTC 59 NA Rattus norvegicus 81 RGD1564704 ENSRNOG00000031283 ENSRNOT00000044808 1 1 1 60 X 79742680 79742699 TCATCAGCCACCACTATGTC 60 79742639 79742657 ACCATCTTCTCCTTCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1321 ENSRNOG00000055420 ENSRNOT00000085286 3 1 1 60 8 43645188 43645207 TATGTTGCCATCTGTAACCC 58 43645229 43645248 AGGAACAGACTTGGTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr408 ENSRNOG00000047092 ENSRNOT00000045825 3 1 1 60 3 16287898 16287917 CACACCAATGTTGAATCCCT 59 16287939 16287958 CAGTGCTCCTTTCATATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472 2 2 4 160 19 753484 753502 CATACCCGCCTTAGTTGTG 58 755470 755923 CATGGACCAGCTTTCTCAC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076337 2 1 4 80 19 755465 755918 CTCCTGTGAGAAAGCTGGT 59 755958 755980 CTCTTACCTGTTGTTTCATCAGG 60 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654,ENSRNOT00000083153 1 2 2 80 1 189571067 189572022 CTTGACTGTGAAGTGTGCC 59 189572065 189572084 AAGACAGTAGCCTCCTTCAG 59 NA Rattus norvegicus 81 Olr1129 ENSRNOG00000039922 ENSRNOT00000061326 1 1 1 60 8 18993157 18993176 ACACAGGATCACAGAATCAC 58 18993199 18993217 AAACAGCCACAAAGCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d7 ENSRNOG00000014019 ENSRNOT00000019089 2 1 1 80 17 23790802 23790820 AGAAAGTTGGCTTTCGTGG 59 23789948 23790758 GCTTCTCAATGTCCAACCG 59 NA Rattus norvegicus 81 Il36g ENSRNOG00000005701 ENSRNOT00000007512 2 1 1 80 3 1286899 1287753 CTGTAACTCCAGTCACTGTG 58 1287794 1287814 AATAAATGGGAGTCCCTTTGC 59 NA Rattus norvegicus 81 Pten ENSRNOG00000020723 ENSRNOT00000028143 2 1 1 93 1 251461651 251463517 TTTAACTGCAGAGTTGCACAG 60 251463570 251463590 GCCATTGGTCAAGATCTTCAC 60 NA Rattus norvegicus 81 Kcnk12 ENSRNOG00000016110 ENSRNOT00000021570 3 1 1 105 6 11374923 11493593 GTGTCGACCATAGGTTTCG 58 11374836 11374854 TGAAGAACAGGATGGTCCC 59 NA Rattus norvegicus 81 Pelo ENSRNOG00000061128 ENSRNOT00000091499 3 1 1 96 2 47267348 47267657 AAATTCCTTCAGGTACACGC 59 47267271 47267289 CTTTCGTGTCTGAAAGGCG 60 NA Rattus norvegicus 81 Fam114a1l1 ENSRNOG00000002110 ENSRNOT00000002917 1 1 1 60 9 120100916 120100937 TCCAGCTATGACTTCAAATGAG 58 120100877 120100895 GACCTCAGATTGCTCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr272 ENSRNOG00000059313 ENSRNOT00000090059 3 1 1 60 1 172813575 172813595 CCATGTACTTCTTTCTCAGCC 59 172813615 172813635 GTGACAGAAGATGAAATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027854.1 ENSRNOG00000057759 ENSRNOT00000089746 1 1 1 81 17 46323275 46323293 ATTCTCAGAGACCAGGTGC 59 46323337 46323358 CGTAGGTGATGTTCAGTGTC 58 NA Rattus norvegicus 81 Vps26b ENSRNOG00000047235 ENSRNOT00000072851 2 1 1 80 8 28059300 28062318 GTACAACAAATCCAAGTACCAC 58 28059241 28059261 TGCTTGATCTTGATTCTCACC 58 NA Rattus norvegicus 81 Slc46a3 ENSRNOG00000000937 ENSRNOT00000001243 3 1 1 81 12 8726489 8733012 CATTCCAGGAGGAAGTTCAG 58 8733053 8733074 GACACTAGACCAGGAATTAACC 58 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 2 1 1 64 5 25168668 25172436 GTACAAACTTGGATGAGGCTG 59 25172462 25172480 ATGGTGATCCACCATCACC 60 NA DesignNoJunction Rattus norvegicus 81 Lef1 ENSRNOG00000010121 ENSRNOT00000013694 1 1 1 80 2 236233580 236233600 TAGCAGACATCAAGTCATCCT 59 236233642 236235825 GTGTTTGTCTGACCACCTC 58 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 3 2 2 80 6 28769789 28775085 GGCATCAAGTACTGAGAAGAG 58 28769729 28769750 ATGTTGGCAGACAGTAATTCAG 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056,ENSRNOT00000004885 1 2 2 80 10 34959134 34959155 ACATTTAAAGAGGAAGACCCTG 58 34957500 34959095 CTTGATTTCACACTTGCTACC 58 NA Rattus norvegicus 81 AABR07051726.1 ENSRNOG00000046324 ENSRNOT00000075136 1 1 1 60 3 20163366 20163384 CCTGCCTATAAGCCTTGGA 59 20163405 20163426 TAATAGGCTCTGACTAGACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 2 2 2 80 4 114973929 114976273 AACATGTCTGTGTACACCC 57 114976317 114976335 CCCATAGCTCAGACATTCC 57 NA Rattus norvegicus 81 Fads6 ENSRNOG00000021380 ENSRNOT00000029001 2 1 1 82 10 103835422 103836218 TAGCTCTTGAGCATTTGAGGA 59 103835360 103835378 CTGAGAGTAAAGGCCCAGG 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000076771,ENSRNOT00000058524 2 3 4 132 3 57607646 57607664 ATTGCATTTGCCGTCTGAG 59 57584414 57607551 ATGTGATCCCACATGTTGTG 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000075860 2 1 4 80 3 57260257 57267220 ATTCACCCTGACAGGATGC 60 57260195 57260215 ATCCCGAAACAATAGCATTCC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000003263 ENSRNOT00000004354 2 1 1 73 13 99216157 99216175 GTCACCATTGAATGGCTGC 60 99216212 99216426 GACACGAGCCTAGAATCGA 59 NA DesignRelaxed Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 3 2 2 81 10 37069781 37071919 GCGAGAAAGGGATCATGGT 60 37071964 37071982 TGGTCCTCGCACATAACTG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000084868 1 1 6 82 1 262001412 262001430 CCAGAACATCCCAGTCCAG 60 262001190 262001366 TGCTGTCTGTGTCTGTCTC 59 NA Rattus norvegicus 81 Icam2 ENSRNOG00000025143 ENSRNOT00000035474 1 1 1 81 10 94571179 94572448 ATCAGGGTGTATGAGCCTC 59 94571116 94571134 CAATGGTGAAGGCTTCACC 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 2 1 1 60 2 111061159 111061180 TGCTGTAGTAATGACATACTGG 58 111059909 111061139 AACTGGTTGATTTGGGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Foxo6 ENSRNOG00000032639 ENSRNOT00000050941 3 1 1 93 5 139226846 139226864 CTCGCAGATCTACGACTGG 60 139209506 139226789 CCGGATGGAGTTCTTCCAG 60 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097,ENSRNOT00000042754 3 2 2 80 11 57480915 57481431 CTCAAGAATGCCAATAAGAGTCC 60 57481468 57481489 GGCCACCATGTAATAGATTCTG 59 NA Rattus norvegicus 81 Zfp69 ENSRNOG00000028662 ENSRNOT00000030016 2 1 1 95 5 139863012 139863671 ATCAGTGGGATATCAACTTTCC 58 139862938 139862956 GAATCCTTTGGGCCTTGAC 59 NA Rattus norvegicus 81 Nt5c ENSRNOG00000003650 ENSRNOT00000004853 3 1 1 82 10 104053266 104053288 ATGGGAGACCTCATTGATGAC 60 104053095 104053114 CAGCAGGTGAACAAGATGTG 60 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 2 2 2 80 15 41121545 41121563 GGCGTCACCTTATATGCAG 59 41121607 41123143 TTCATGAACAACAGCCAGC 59 NA Rattus norvegicus 81 Olr234 ENSRNOG00000033512 ENSRNOT00000051038 2 1 1 60 1 171274868 171274888 TTCAGCAGATACTTACAGCAC 58 171274909 171274928 TAGGAGGATTACCACACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbsn ENSRNOG00000021015 ENSRNOT00000028526 3 1 1 89 1 89204358 89204377 AGGAAATGAACAGGTTGCAG 59 89204429 89205736 CTTGATGAGGCCCATTCAG 58 NA Rattus norvegicus 81 Slc1a4 ENSRNOG00000005248 ENSRNOT00000007002 2 1 1 80 14 104599375 104611902 TCCTGGATTTACTCAGAAACCT 59 104597901 104597919 CCACTGTGTAACTGGTTGC 59 NA Rattus norvegicus 81 Tlr9 ENSRNOG00000048161 ENSRNOT00000074194 1 1 1 114 8 114916216 114917034 CCATCATGGTTCTCTGTCG 58 114917112 114917130 AGTTCACAGGGTAGGAAGG 58 NA InUTR Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 2 2 2 80 1 219155225 219155245 AATTGAGTTCATCAACCGGAG 59 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408,ENSRNOT00000084180 2 2 2 105 17 45516407 45517535 TTTACCTTCTTGAAGCGCTC 59 45517603 45517621 CAAAGTTCCAGCGGATGTC 59 NA Rattus norvegicus 81 Slc35e1 ENSRNOG00000012287 ENSRNOT00000016399 1 1 1 80 16 19061512 19062291 TCTTCCTGTACAACAAGACCA 59 19062333 19062351 TTAGGTCTGACGTGGAGAC 59 NA Rattus norvegicus 81 Tmem39a ENSRNOG00000003075 ENSRNOT00000048738 1 1 1 80 11 64751069 64751092 GTCAGCTTTACCTTCTATTCAGAC 59 64743260 64751031 GCACTACCATTCCTGTTCCT 60 NA Rattus norvegicus 81 Camkk1 ENSRNOG00000018242 ENSRNOT00000025009 1 1 1 80 10 59604112 59604130 TGGTAGAGGTGACTGAGGA 59 59604172 59604615 TAGACTTGACCAGGATCACAG 59 NA Rattus norvegicus 81 Msh4 ENSRNOG00000010431 ENSRNOT00000014106 2 1 1 80 2 260070014 260070034 GGCACTAATACAGAAGAAGGG 58 260064704 260069975 GAAGAGTGTAAATGCCTTTGTG 58 NA Rattus norvegicus 81 Tspear ENSRNOG00000001219 ENSRNOT00000038419 2 1 1 80 20 11528130 11528149 ACTCTGATCTTGGCTGTGTC 60 11526872 11528088 AACATCCGCCATTATGTCCA 60 NA Rattus norvegicus 81 Nkd2 ENSRNOG00000016103 ENSRNOT00000021898 3 1 1 81 1 32080132 32080601 TCTGCCTATAGCAGGAAGC 59 32080646 32080664 GCTCTGTGTTCTCATCCAC 58 NA Rattus norvegicus 81 Calb1 ENSRNOG00000007456 ENSRNOT00000010845 3 1 1 80 5 29556355 29556375 TAAGGACCTGCTAGAGAAAGC 59 29556417 29558269 AACAGCTTCAGCATGAGGT 60 NA Rattus norvegicus 81 Hint1-ps1 ENSRNOG00000000622 ENSRNOT00000000772 2 1 1 103 10 40208358 40208376 TCATCCGCAAAGAAATCCC 58 40211357 40211376 GGGTATCACCAGAAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Mgat5b ENSRNOG00000024954 ENSRNOT00000064410 1 1 1 80 10 105922030 105922048 CCTGCCTTTGTGAAGAACC 59 105922091 105922391 CCCTATAAAGAGCTTGGCCT 59 NA Rattus norvegicus 81 Trappc5 ENSRNOG00000001003 ENSRNOT00000001327 3 1 1 74 12 2231558 2231576 CCAAAGTTACAGCGCACTG 60 2231614 2231632 GATCTCGGGCAATAACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_19_0291.1 ENSRNOG00000030864 ENSRNOT00000050750 2 1 1 60 19 17967969 17967987 AAGGAAGAACAGGTCCTCC 59 17968164 17968183 CTTACCTAGCAAACGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 1 2 2 80 9 65659959 65661737 GGAAAGATGTCCTCGAGGT 59 65661780 65661799 CTCGGGTTGTCTTTATTGCT 58 NA Rattus norvegicus 81 Prr9 ENSRNOG00000012312 ENSRNOT00000016430 3 1 1 157 2 192026626 192027190 GACTCTTCAAATCATCTGAGATGTC 60 192026493 192026513 TGGACATTTATCTTGACAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 2 1 1 61 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569340 90569361 AGGGAGTTATCGCTAAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC287167 ENSRNOG00000045989 ENSRNOT00000052292 3 1 1 80 10 15577933 15577952 ACAACATCAAGAAAGCCTGG 59 15577757 15577892 CAATGAACAACCTCCCTATGG 59 NA Rattus norvegicus 81 Lpxn ENSRNOG00000012611 ENSRNOT00000017109 3 1 1 80 1 229667297 229667420 TCACAGATAAAGTGCTGACAG 58 229667462 229667480 CAAACACCTCTCCACAGTG 58 NA Rattus norvegicus 81 Eif4enif1 ENSRNOG00000018475 ENSRNOT00000024993 3 1 1 80 14 83433401 83433421 TAAGGACCTACGAGACTTGAG 58 83433462 83434022 CTATCTCCAAACTCCCTCCT 58 NA Rattus norvegicus 81 Olr404 ENSRNOG00000045690 ENSRNOT00000049590 2 1 1 60 3 16117251 16117272 AGTATCTGAGTTCATCCTCCTG 59 16117292 16117311 AAAGTACATGCCTTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0040.8 ENSRNOG00000056715 ENSRNOT00000086520 2 1 1 60 20 1931701 1931723 GTTCTTTGGTCTCTTCTATGCAG 60 1931743 1931761 CAGGGTGTATACGAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r45 ENSRNOG00000028882 ENSRNOT00000045214 2 1 1 60 1 67134463 67134484 GTTTCCAAGCAATCACAATCAG 59 67134424 67134447 GCTCTGTATTTAACCTTCATCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563962 ENSRNOG00000045814 ENSRNOT00000073716 3 1 1 137 2 165805256 165805274 TGCAGAACGAGCTAGTGTC 60 165815082 165815100 GCTTCTTCCTCATGGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562200 ENSRNOG00000026157 ENSRNOT00000030771 2 1 1 82 X 45519548 45520199 GATGTCATGGTGTCCATGG 58 45519484 45519502 TAGATCGCCTCCATCATCC 58 NA Rattus norvegicus 81 Gpr141 ENSRNOG00000059698 ENSRNOT00000092193 2 1 1 110 17 47241539 47241558 CGAGATTATGTGCAAGTCGT 59 47241631 47262234 TAGAGCTTGCTCCATGGAC 59 NA Rattus norvegicus 81 LOC100911893 ENSRNOG00000048946 ENSRNOT00000074948 3 1 1 60 8 18037369 18037389 CCCTGAGGTATACAATCACCA 59 18037329 18037348 AGACAGAGCAGAACAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf3c5 ENSRNOG00000010981 ENSRNOT00000015068 2 1 1 80 3 7147540 7148585 TAAGTACAAGCTCAAGGATTCG 58 7147481 7147500 CACAGCTGGTAGAACATCTG 58 NA Rattus norvegicus 81 AABR07065750.2 ENSRNOG00000050118 ENSRNOT00000072238 2 1 1 73 6 140102151 140102283 AAAGGTGTCCAGTGTGAGG 60 140102096 140102115 AGTTTCAGAGACCTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Samd14 ENSRNOG00000004155 ENSRNOT00000005519 3 1 1 85 10 82823927 82823945 TCAAAGCTTCGAGAACCTG 58 82825752 82829051 TTGTGTAAGCTAGTATCCAGC 58 NA Rattus norvegicus 81 Lgi3 ENSRNOG00000011323 ENSRNOT00000015104 1 1 1 80 15 52222659 52222680 TACTCAACTCCAACAAGTTCAC 59 52222718 52223077 TTTCTATGAAGAGGTACTGCAG 58 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 2 1 1 95 17 47687950 47687968 AGTTCAGGATGCATCGGAG 60 47688025 47695300 TCTTCAGATCCTGCTTCAGAC 60 NA Rattus norvegicus 81 Tram1l1 ENSRNOG00000009835 ENSRNOT00000013030 1 1 1 60 2 228545333 228545353 TGATTGTCTCAGTGGTTACAG 58 228545373 228545393 GCATTTCCATTCCGATTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786,ENSRNOT00000045686 2 2 4 80 5 115086919 115086937 CCAGAAAGACTGGAACCCT 59 115084457 115086876 GTCTTGTCTCGGTACTTTGC 59 NA Rattus norvegicus 81 Itm2b ENSRNOG00000016271 ENSRNOT00000023037 1 1 1 80 15 55256799 55256819 GGCTTCTTCATTTACCGACTG 59 55255572 55256763 CTTCTGAATACCTCTAATGGTTTCC 59 NA Rattus norvegicus 81 Itm2b ENSRNOG00000016271 ENSRNOT00000023037 3 1 1 80 15 55256793 55256812 TCATTTACCGACTGTGTCAC 58 55255565 55256752 CTTCACGCTTCTGAATACCTC 59 NA Rattus norvegicus 81 Cbl ENSRNOG00000008444 ENSRNOT00000067902 3 1 1 80 8 48505188 48505207 GAACATCCTGCAGACAATCC 59 48503528 48505147 AACAAATAGAAGCCTTCCCTG 58 NA Rattus norvegicus 81 Obp1f ENSRNOG00000058697 ENSRNOT00000088538 2 1 1 80 X 45213830 45213849 GCTTACTTTCAGCACATGGA 59 45213890 45214338 ACATTCACTGTCCAACTTGAC 59 NA Rattus norvegicus 81 LOC102551235 ENSRNOG00000027393 ENSRNOT00000036231 3 1 1 60 3 3700176 3700199 TAGAATACATCTCAGACAGAAGGG 59 3700139 3700157 TCAGAAGGTGTAGACCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp263 ENSRNOG00000007678 ENSRNOT00000010442 2 1 1 80 10 12028129 12028610 GGAGAGGGCATTATCTGCT 59 12028067 12028085 TGGGTCCCAGTCATATCCT 59 NA Rattus norvegicus 81 Tmem114 ENSRNOG00000002768 ENSRNOT00000003749 1 1 1 122 10 7291424 7294984 TTTCTCTTCGGAGCCATGG 60 7295070 7295088 TATGTCCACCTGATCCAGC 59 NA Rattus norvegicus 81 AC094001.1 ENSRNOG00000054026 ENSRNOT00000028126 1 1 1 60 1 216953442 216953463 CATGTTTCTCTTAGTCTTTGGG 57 216953403 216953421 CTTGCAGAATTTGGAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035375.1 ENSRNOG00000046761 ENSRNOT00000071795 1 1 1 136 12 11808211 11808886 GAAATGACTGTTCAGATGGAGAG 59 11808097 11808115 GGTCTCAGGAACTTGAGCA 59 NA Rattus norvegicus 81 Mrps15 ENSRNOG00000008279 ENSRNOT00000011565 3 1 1 81 5 144056111 144056129 CAAGATGATGAACCAGCCT 58 144056172 144057726 CAACATCATCAACCTTCTCCA 58 NA Rattus norvegicus 81 Mycn ENSRNOG00000051372 ENSRNOT00000084924 3 1 1 96 6 38224075 38226147 GCGACTCAGATGATGAAGAC 59 38223998 38224017 GCCTTGTTGTTAGAGGAGGA 60 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000050922 ENSRNOT00000072875 3 1 1 112 1 198044606 198044965 ATCTTATGTCGTCGGTGGAG 59 198044513 198044531 TCTGGAACTTGGTCAGCAG 60 NA Rattus norvegicus 81 Paqr6 ENSRNOG00000026059 ENSRNOT00000036143 2 1 1 84 2 187738935 187738954 TTAGACTGTGTCCTCAGCTC 59 187739001 187739100 ACAGGAAGTACCAAGTGGG 59 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792,ENSRNOT00000017243 1 2 2 84 8 123310275 123311052 CCACATTGCACTGGTAGGA 60 123310209 123310233 CACATAATCAACATCAAGAGACCTC 60 NA Rattus norvegicus 81 LOC100909856 ENSRNOG00000025724 ENSRNOT00000031928 1 1 1 80 5 142820320 142820338 GTCACATGAAAGGTCACGA 58 142820379 142825473 AGTGATTTGTATCCTCTGATCC 58 NA Rattus norvegicus 81 Zkscan2 ENSRNOG00000024245 ENSRNOT00000020281 1 1 1 80 1 193454576 193457675 GCCATTACCTAAGAATGCTCAC 60 193454517 193454535 GTCGCCTCCTCATCTACAG 59 NA Rattus norvegicus 81 Pglyrp3b ENSRNOG00000045617 ENSRNOT00000066410 1 1 1 80 2 191912361 191914613 TGTGACATTGCATATCACTTCC 59 191914652 191914672 GTGAGAGCCTTCAATAGTCCA 60 NA Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 2 1 1 60 20 2332208 2332226 CTACAAGCCTGTGAAGCAC 59 2332249 2332268 GATAAATTGGGAGGAGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 3 1 2 107 6 93440014 93440032 GAACTAGAGCTCAGCTGGG 60 93440427 93441798 TTCCTTCAAAGATTCCTTGGC 59 NA Rattus norvegicus 81 Haao ENSRNOG00000031263 ENSRNOT00000045996 1 1 1 80 6 7045691 7045709 TAAGGTGACAATGGGAGGA 58 7045525 7045647 CACATGTACGAGAACCCAG 58 NA Rattus norvegicus 81 Mboat1 ENSRNOG00000027125 ENSRNOT00000036978 3 1 1 80 17 36121314 36177187 CGCTAGATCAGGTTAACTTTGTG 60 36121256 36121279 CAGGACGTAAGTAGATTCTAAACC 59 NA Rattus norvegicus 81 AABR07071891.1 ENSRNOG00000049295 ENSRNOT00000032991 3 1 1 80 1 84613495 84613514 ATGCTACTCAGAAGGTCCTC 59 84613557 84615098 AAAGGCAACTTCCTACCAC 58 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 3 2 2 80 10 63642296 63642460 GACTCAAGGAAGCTTATAGTGTG 59 63642497 63642518 CATAGGCTTGTTCAATCAGACC 60 NA Rattus norvegicus 81 Hsh2d ENSRNOG00000023614 ENSRNOT00000038494 2 1 1 80 16 19339477 19339496 GGTTCAGGATAATGGAAGGC 58 19337988 19339434 CCTTCAGAAGCCTCTTCAG 58 NA Rattus norvegicus 81 Hsh2d ENSRNOG00000023614 ENSRNOT00000038494 3 1 1 80 16 19339478 19339497 TGGTTCAGGATAATGGAAGG 57 19337989 19339435 CTTCAGAAGCCTCTTCAGG 58 NA Rattus norvegicus 81 AABR07039435.1 ENSRNOG00000046897 ENSRNOT00000045534 3 1 1 80 X 76696295 76697036 TCGAGATCAAAGAGGAAACC 57 76696234 76696254 ATTTACATTCTCATCCGTGGG 58 NA Rattus norvegicus 81 Zbtb9 ENSRNOG00000026799 ENSRNOT00000000574 1 1 1 89 20 5566663 5566897 AAGGTGTGACCCTAGTCTC 58 5566950 5566968 AAAGGAGTCGAAGCATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc65 ENSRNOG00000058916 ENSRNOT00000090760 2 1 1 80 7 140395148 140395169 GAACTTAGTCAAACTCACCCTG 59 140395209 140396436 AGGATCTTCTCACCCTTCTC 58 NA Rattus norvegicus 81 Nxf1 ENSRNOG00000019069 ENSRNOT00000026033 1 1 1 80 1 224964389 224964407 AAGCTTGATGACATGTCCA 57 224964450 224964806 GGACTTCAATTCGTTTCCAG 57 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 1 1 2 136 1 84893942 84894773 TGGTTCAGTGACATTTAGGGA 59 84891942 84893844 AACTTCCCACCACTGTGAC 60 NA Rattus norvegicus 81 Cdh20 ENSRNOG00000014556 ENSRNOT00000019907 3 1 1 80 13 24874272 24879298 ACTGTGAAGAAGCCTTTGAG 58 24879340 24879359 CATCTCTACGTGAGGATTGG 58 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000031315 ENSRNOT00000043171 3 1 1 60 10 57251325 57251344 CAGTACAAGAAGGGCAAGGA 60 57251367 57251385 GTTTCCTGTCATAACGCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 2 2 2 80 17 8516244 8516693 GTCAGCTTTAAGGTTGATAGCAG 60 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Clpx ENSRNOG00000030225 ENSRNOT00000048302 1 1 1 80 8 70836225 70836245 CTTGTGCAGATACTGACTGAG 59 70836284 70837434 CAATTCACACTTATCCATGCTG 58 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 1 1 1 67 10 90930962 90930980 TTCATACCAGAGTGGCAGC 60 90931011 90931517 CATTGTATACACGGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 Trim80 ENSRNOG00000028812 ENSRNOT00000065292 3 1 1 80 10 103999249 104003457 GAAAGACACTACTCCAGAATTACTG 59 104003492 104003513 TTTCCTTGAACAAGAACAGCTC 60 NA Rattus norvegicus 81 Mrpl32 ENSRNOG00000015989 ENSRNOT00000021433 3 1 1 61 17 53104221 53104240 GAGAAGAAACCCTCACAAGC 59 53104988 53105006 CACATTCAGGGCAAATGTC 57 NA DesignNoJunction Rattus norvegicus 81 Mdfic ENSRNOG00000053787 ENSRNOT00000082453 1 1 1 80 4 42222617 42252587 ACTTGTCAGAACCCAACCT 59 42252631 42252649 ATCTTGCTGGTTTCCTCCT 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 2 2 2 80 15 46116197 46116217 CGATCACTCTGTCATCATGTG 59 46116258 46121903 TGGACTTTGTCATTGTGTCC 59 NA Rattus norvegicus 81 Emc3 ENSRNOG00000009934 ENSRNOT00000013488 1 1 1 80 4 145476520 145477027 GGCTTTGTCACAACTAAGGTC 60 145476460 145476478 TGTGAGCAGCTCTATTCCC 59 NA Rattus norvegicus 81 Kazald1 ENSRNOG00000016058 ENSRNOT00000021553 3 1 1 152 1 264830041 264830147 CATATCTCTGTGCAGTTTAGGG 59 264830260 264830278 TACTGTGAGGGTAGCAGAG 58 NA Rattus norvegicus 81 Ggt1 ENSRNOG00000047697 ENSRNOT00000074533 1 1 1 80 20 14021174 14021371 CATCAACCTCTACTTTGGCT 58 14021113 14021132 GAGCTGAAGTCATCCATCTC 58 NA Rattus norvegicus 81 AC106663.5 ENSRNOG00000061438 ENSRNOT00000067997 1 1 1 60 14 86751580 86751600 GAAGAACTTAAATTGGCCACG 58 86751622 86751640 TGTACACATTCCGGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cav1 ENSRNOG00000056836 ENSRNOT00000078250 1 1 1 92 4 44598815 44598833 GAGAAGCAAGTGTACGACG 59 44598887 44628001 AAAGTCAATCTTGACCACGTC 59 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733,ENSRNOT00000083425 1 2 2 80 1 44061671 44061692 ATCGCAGATAACAAACACAGAC 59 44061733 44065718 AGTTGCTGAAGCTGTTGAC 59 NA Rattus norvegicus 81 Slc6a16 ENSRNOG00000025220 ENSRNOT00000033882 2 1 1 80 1 101257005 101257265 CAGAAGCAGTTTATGAGGATTGAG 60 101257302 101257322 CCCGGGTAATAGTGAGATGAC 60 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136,ENSRNOT00000073148,ENSRNOT00000071615 3 3 3 80 10 42668703 42673049 TGGTCTATGGAAGAGCAGAC 59 42673092 42673110 GCTTGGAGAAGTCGATGAC 58 NA Rattus norvegicus 81 Fgf8 ENSRNOG00000017524 ENSRNOT00000023558 1 1 1 106 1 265497713 265497731 GACCTACCAGCTCTACAGC 59 265494408 265497643 CAATGAGCTTTGCGAAGGG 60 NA Rattus norvegicus 81 Dexi ENSRNOG00000002635 ENSRNOT00000003544 3 1 1 217 10 5199874 5199895 ACGTCTTCGATGGATATTTGGA 60 5211365 5211383 CTCACTTCTCCTGGCAGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076520,ENSRNOT00000075125 3 2 5 80 15 10263135 10263915 AAACAGCCAGCAAGAAACC 59 10263073 10263093 CAGAAGTGAAGTCTGAAGGGA 60 NA Rattus norvegicus 81 Fam101b ENSRNOG00000006674 ENSRNOT00000008982 3 1 1 116 10 64197031 64199660 GGAAATAAAGTATACCTCCTCAGTC 59 64196939 64196958 GGGATACAGGTGACTGTCTG 60 NA Rattus norvegicus 81 Sec22a ENSRNOG00000043069 ENSRNOT00000063795 3 1 1 98 11 68653704 68672873 TAAGATTTCTTCTGCCCACC 58 68672931 68672952 CGAATTAAATTCAGAGCTCCAC 58 NA Rattus norvegicus 81 Egf ENSRNOG00000053979 ENSRNOT00000089504 1 1 1 80 2 68877595 68877615 TTATGTACCAGACGATGACAG 57 68877656 68882301 TCATCTTCATAGTTCAGCCC 57 NA Rattus norvegicus 81 Notch3 ENSRNOG00000004346 ENSRNOT00000037456 2 1 1 80 7 14151986 14153173 AGGGTGTCTTCCAGATTCTC 59 14151923 14151941 GGATCAATGCAGTAGAGCC 58 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 1 2 2 80 9 65994792 65997239 CTCAGTCTGGAACATTTGGG 59 65994731 65994750 GTAACACAACTTGCTGAACC 58 NA Rattus norvegicus 81 Fam57a ENSRNOG00000007722 ENSRNOT00000010168 2 1 1 80 10 64363641 64365381 CTATTTCACAGAAGCTCCGAG 59 64365421 64365441 CAAACGGAGTACTCAGTTCTG 59 NA Rattus norvegicus 81 Olr765 ENSRNOG00000046942 ENSRNOT00000040298 2 1 1 60 3 102723944 102723964 TAGGGTACTCAAACTTGCCTG 60 102723984 102724004 GTTGGCAATAACCATGATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpalpp1 ENSRNOG00000001037 ENSRNOT00000001371 3 1 1 80 15 58162568 58164838 CAACTCAGAGGAAGCAGAG 58 58162506 58162526 ACACTATAGTCAACTGGTCCT 58 NA Rattus norvegicus 81 Mesdc1 ENSRNOG00000012349 ENSRNOT00000016455 1 1 1 60 1 146028485 146028503 TCAGGCTTTAAGGGAAAGG 57 146028443 146028463 CACAGAATTGGAATTCACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000041237 1 1 2 80 18 40586487 40587353 GCTGCATTTGTCACTACTG 57 40596079 40596097 GAGTCCTGGCTTCTAACAG 57 NA InUTR Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076346 2 1 3 81 6 76701662 76702742 CAACAATTAGGAAGGCAATGG 58 76702783 76702803 ACAGAATAGGTCCCAATTCAC 58 NA Rattus norvegicus 81 AABR07043702.1 ENSRNOG00000029323 ENSRNOT00000038605 1 1 1 80 19 36181028 36182070 TAACTTCTATAGCAACCTGCAC 58 36182111 36182129 TCCTGCTTAAAGGTGACCA 59 NA Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000080944 1 1 2 89 10 14847948 14848769 AAGATGAAGACAAGAGTGGG 57 14847878 14847896 TTCAAATCCTGCTGGTCTG 58 NA Rattus norvegicus 81 Tgs1 ENSRNOG00000008156 ENSRNOT00000010783 1 1 1 80 5 16413542 16413563 AATGCTGCTCTTCATTGAAGAC 60 16413602 16417301 TTCCGATCCTCTACAAATGCT 59 NA Rattus norvegicus 81 Adcy2 ENSRNOG00000032150 ENSRNOT00000047627 3 1 1 80 1 37596493 37596512 ACACCATTCTACTCCACACC 60 37596554 37607361 CTTTCCAAATGCCTGGTCTC 59 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000091794 1 1 3 60 14 60058113 60060043 CAGGGTTGAAAGTGTGGTC 59 60058071 60058089 CATCAGACTTGCTGACAGC 59 NA DesignNoJunction Rattus norvegicus 81 Icoslg ENSRNOG00000023109 ENSRNOT00000038547 2 1 1 80 20 11335662 11335683 GGATGTTATCTGCTGTGTAGAG 59 11334150 11335623 CTTCCAGTGAAACTATCTGCC 59 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000010627 2 1 2 80 10 94179759 94179780 TAGACATGGAGACGACTTACAG 59 94179821 94181916 TTGTCAGATCAGGCTCCAG 59 NA Rattus norvegicus 81 Cdc27 ENSRNOG00000005904 ENSRNOT00000007963 1 1 1 80 10 92561991 92562010 AATGCATTTCCAGAAAGCAC 58 92559139 92561948 AGTGCATGCTGAACTACTC 58 NA Rattus norvegicus 81 RGD1309779 ENSRNOG00000008340 ENSRNOT00000066106 2 1 1 81 8 68308522 68312548 GGTCATCAACATGGGTATTCC 59 68308461 68308481 GGTATGAACAGTCTCTGTGAC 58 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 2 2 2 80 15 37744079 37744101 TTGAGAAGAAGGACAGTAGAGTG 60 37744141 37745669 GGGCAAATTCGTTCTCCAG 59 NA Rattus norvegicus 81 Inhba ENSRNOG00000014320 ENSRNOT00000019272 1 1 1 147 17 51909782 51912375 ACCCGAAAGAGAATTTGCTG 59 51909654 51909672 AATCCTCTCAGCCAAAGCA 59 NA InUTR Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000063915,ENSRNOT00000034784 1 2 4 80 14 22378287 22378308 CCCAACATTACCAAATGTTGAC 59 22378347 22379770 AAATCTTCCATATCCTTGGGC 58 NA Rattus norvegicus 81 Itgb1bp1 ENSRNOG00000059402 ENSRNOT00000092192 1 1 1 80 6 43354544 43356921 ACAAAGAGCAAGTCTGTGG 58 43354482 43354500 AGTGGAGTCTGTATCGAGG 58 NA Rattus norvegicus 81 Olr244 ENSRNOG00000045879 ENSRNOT00000055175 1 1 1 60 1 172214930 172214948 TTATGTGATGCCCAAGTCC 58 172214888 172214906 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faim3 ENSRNOG00000004441 ENSRNOT00000038822 1 1 1 80 13 47611281 47612097 GGATTCATAGACAAAGTCACCAC 60 47612136 47612155 TACTGAAGTGTTGGTGGAGG 59 NA Rattus norvegicus 81 Hcar1 ENSRNOG00000026661 ENSRNOT00000032274 2 1 1 60 12 38145923 38145941 CTACTTCCTCTGGACGGTG 59 38145964 38145983 ATGGAGAGCTATGTGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad3 ENSRNOG00000008620 ENSRNOT00000039730 2 1 1 80 8 68575404 68575422 GCTGTCTACCAGTTGACTC 58 68573201 68575360 TGTCTGTCTCCTGTACTCG 58 NA Rattus norvegicus 81 Tmem55a ENSRNOG00000006697 ENSRNOT00000009375 3 1 1 80 5 28439865 28441407 GGGTTAACTGTTGGCACAC 59 28441448 28441469 ACCTAACAGATAAGCAATTGCC 59 NA Rattus norvegicus 81 Fam216b ENSRNOG00000021943 ENSRNOT00000038579 3 1 1 80 15 60287319 60287340 ATCAAAGTGTTCCACGAATACC 59 60285575 60287283 CTTGATTTAGGTCCTTCAGTAACG 60 NA Rattus norvegicus 81 LOC688553 ENSRNOG00000037632 ENSRNOT00000035922 1 1 1 80 14 89260970 89260988 CCCTTTGACTTTGACAGGA 57 89261032 89266149 TGGCAGTTTCACCTTTCTC 58 NA Rattus norvegicus 81 Rn60_5_0814.16 ENSRNOG00000051050 ENSRNOT00000076648 1 1 1 60 5 77798544 77798564 CCTAGTCTCTAAGTTGGATGG 57 77798504 77798523 GTTCTTATTCACCCTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.16 ENSRNOG00000051050 ENSRNOT00000076648 3 1 1 60 5 77798543 77798564 CCTAGTCTCTAAGTTGGATGGA 59 77798504 77798523 GTTCTTATTCACCCTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 2 2 2 80 15 52302680 52302702 GAAGATGATGACTCTGAAGAGGA 60 52301686 52302645 CAAGTTGGAAGTAACCTTACTGAG 60 NA Rattus norvegicus 81 Hmga2 ENSRNOG00000042460 ENSRNOT00000065137 1 1 1 93 7 65261912 65261930 AAAGCAGAGACCATTGGAG 57 65160042 65171784 TCTCTTCAGTCTCCTGAGC 58 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755,ENSRNOT00000037028 1 2 2 80 8 66868640 66868844 AGAATCGCCAACTGGTAGTC 60 66868579 66868599 GTCCATTCAGACTCTGTACCA 59 NA Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 2 1 1 80 19 37248644 37249747 ATTACAAGCAGTACCAGCTG 58 37248583 37248601 AGGTTCACATATGCCTCCA 58 NA Rattus norvegicus 81 Rad1 ENSRNOG00000018063 ENSRNOT00000024557 2 1 1 80 2 60463858 60466169 CTACACCAGGGACTTTAACTG 58 60466205 60466229 CTCCTTCTTCTAGAAATAGCATCAG 59 NA Rattus norvegicus 81 Taldo1 ENSRNOG00000018367 ENSRNOT00000024863 1 1 1 85 1 214385114 214385132 AAATGGCTGTGGAGAAGCT 60 214385180 214385692 CATTCGTTCTGTGAGCATCC 59 NA Rattus norvegicus 81 Foxa2 ENSRNOG00000013133 ENSRNOT00000017742 1 1 1 98 3 142383469 142384460 GAGTTAAAGTATGCTGGGAGC 59 142385529 142385547 TTGCTCACGGAAGAGTAGC 60 NA InUTR Rattus norvegicus 81 Pprc1 ENSRNOG00000018561 ENSRNOT00000025221 2 1 1 81 1 265825097 265825115 AGCTGAAGCAGAGGTTCTC 59 265825158 265825606 AAACCATAGTTGTCACCTTGG 59 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 3 2 2 81 11 67107554 67107572 TCTCTTTCTGCTGGTCGTC 60 67107617 67117870 AGTCTTTCTGCTGGGTCTG 59 NA Rattus norvegicus 81 Inha ENSRNOG00000020097 ENSRNOT00000027227 2 1 1 121 9 82700773 82700791 GACCTCTGAACCAGAGGAG 59 82702379 82702397 TGAAGAGACCTTCCTCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 1 3 3 80 4 7133353 7133592 TACCATCAGCACTTACAGGA 58 7133635 7133653 CTTGATCTCTGGGTAGCAC 57 NA Rattus norvegicus 81 Pdlim2 ENSRNOG00000008543 ENSRNOT00000011663 2 1 1 97 15 51853822 51853841 GTTGACTGTGAATGTGGTGG 60 51853054 51853762 TCTCTGTGACCTTCGTCAC 59 NA Rattus norvegicus 81 Tagap ENSRNOG00000018915 ENSRNOT00000025580 3 1 1 81 1 47500224 47500242 TCGCTGTTTGATCAACCCT 60 47499635 47500179 GGATGGTGAGGATGTCCTG 60 NA Rattus norvegicus 81 Olr1305 ENSRNOG00000039238 ENSRNOT00000060094 1 1 1 60 8 43249172 43249190 GCAGATCCAAAGCCTTCAG 59 43249130 43249148 CCAAAGAAGACCGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ormdl1 ENSRNOG00000042961 ENSRNOT00000065581 2 1 1 142 9 53116485 53116504 TGTATTCTTGCTGGTGAGGT 59 53111414 53116380 ATGGGTTGTCTTCTTCCCG 60 NA Rattus norvegicus 81 Wfdc15a ENSRNOG00000053099 ENSRNOT00000090458 2 1 1 80 3 160591661 160591815 AGGAAAGGAGTTACACCCA 58 160591599 160591619 GTTGCATAAAGGTAACAGGAC 57 NA Rattus norvegicus 81 Wfdc15a ENSRNOG00000053099 ENSRNOT00000090458 3 1 1 80 3 160591852 160591871 TACAGTTCACAACAACCACC 58 160591655 160591810 CTTGTTTGGGTGTAACTCCT 58 NA Rattus norvegicus 81 Endod1 ENSRNOG00000024757 ENSRNOT00000033969 3 1 1 60 8 12901411 12901429 TGATAAACGGTGTTGCGAG 59 12901369 12901387 ACGAGGTATGAGACGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fdxr ENSRNOG00000058497 ENSRNOT00000085636 1 1 1 80 10 103822203 103822223 ATCTATGAGAAGCAGCTCGTC 60 103821951 103822167 GATGACATTCTTTACTTCAGGATGG 60 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 1 2 2 80 10 43542836 43542854 CCAGCAATCTTGAGGAGGA 59 43542898 43544547 GAAACTCTGTGTCCATGGC 59 NA Rattus norvegicus 81 Gnl2 ENSRNOG00000009430 ENSRNOT00000012702 1 1 1 80 5 143033499 143033518 GCAGTATCAGTCAACTGTGG 59 143033558 143035297 ATCACACGAGTATTTCCAAACC 59 NA Rattus norvegicus 81 AABR07035107.1 ENSRNOG00000000891 ENSRNOT00000035992 3 1 1 81 12 4738313 4740791 AGAAGACACGGAAGACCTG 59 4740836 4740854 GATGTGCAAAGGCTTCACC 60 NA Rattus norvegicus 81 RGD1559578 ENSRNOG00000024233 ENSRNOT00000037415 3 1 1 81 10 98097887 98112422 AAAGATATGCAAGGAGCGAG 58 98097825 98097844 TTCGGAAGCTCATTGTTGTC 59 NA Rattus norvegicus 81 Olr190 ENSRNOG00000017357 ENSRNOT00000023307 2 1 1 60 1 169966777 169966798 CACAGTCAACCGTCTTTATCAG 59 169966817 169966837 AATTAGGTCAGATCCCAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 3 2 2 82 10 10991804 10991825 CCTGAGTATGAAGACCAAAGAG 58 10991066 10991763 CCAGTTCACTGAATATCTGCA 58 NA Rattus norvegicus 81 Aurka ENSRNOG00000004479 ENSRNOT00000055102 2 1 1 80 3 170368200 170370903 ACAGCTACCTACATCACGG 59 170368138 170368156 TGGCTTGATGTCTCTGTGG 60 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 2 2 2 80 16 20339606 20339624 CTGTGCTGTTGGTCTTCAG 59 20339664 20341729 GTTTATCATGGTACCTCTCACAC 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454,ENSRNOT00000076657 3 2 3 60 14 47202532 47202552 GGTTCAGACTTTGTTTCAGGA 59 47202492 47202510 GGCCTGGTAAGTGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bin2a ENSRNOG00000032461 ENSRNOT00000037757 3 1 1 80 8 27936830 27937528 CTTCATACAAGTAAAGGACTGGG 59 27936772 27936792 GGGCCAATATTCCAATATCGT 58 NA Rattus norvegicus 81 LOC102551819 ENSRNOG00000025970 ENSRNOT00000006672 2 1 1 123 9 84550608 84550630 GCCAAAGATGAGACCAGAC 58 84550717 84550735 TAGTTCTTCCTGCTGGCTC 59 NA Rattus norvegicus 81 Zfp862 ENSRNOG00000024795 ENSRNOT00000048576 3 1 1 80 4 78140547 78140565 AGGAAGAATGGATGCTCCT 58 78140608 78142339 CAGTTGGTCCTAGAGATGCT 59 NA Rattus norvegicus 81 Vdr ENSRNOG00000054420 ENSRNOT00000082429 2 1 1 80 7 139346982 139354198 GGATTCAGGGATCTCACCTC 59 139346921 139346941 GTTGGAGCGTAACATGATCAC 60 NA Rattus norvegicus 81 Wdr64 ENSRNOG00000038083 ENSRNOT00000065706 2 1 1 80 13 93803994 93804012 GAATTTGCCATGCCAAGAG 58 93804054 93815993 TTTATCATCTCCTCCAGTGAC 57 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 3 1 1 105 6 34155201 34159855 CACAGGAGCAAATGTAGCC 59 34159924 34159942 ATGTGTAGTCGTCCATGGC 60 NA Rattus norvegicus 81 Idi1 ENSRNOG00000016690 ENSRNOT00000022389 2 1 1 83 17 57980734 57980752 AAATGATGCCATGGGTGTC 59 57978298 57980690 TTTAGATCAACCTCTTCCAAGG 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 3 2 2 90 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487490 69487509 TGCTTGAGTTTCCAGTTCCA 60 NA Rattus norvegicus 81 Olr1462 ENSRNOG00000022244 ENSRNOT00000035285 3 1 1 60 10 45922965 45922983 TCTATAATCACGCCCACCC 59 45922923 45922942 CCTTCACGTCCTTATTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 1 2 2 142 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1560860 ENSRNOG00000050332 ENSRNOT00000072723 1 1 1 80 17 57508112 57511993 TAAGACTCGAGGGAGAAGC 58 57508050 57508068 TCTGGGTTAGGAAGGAAGC 59 NA Rattus norvegicus 81 Tas1r1 ENSRNOG00000009708 ENSRNOT00000013385 2 1 1 80 5 169201476 169204571 TTTCTCAACATGAGTGAGCT 57 169201415 169201433 GAAGCAAGTAGTGCTCTCC 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450,ENSRNOT00000018440 2 2 2 80 15 52362883 52364035 GACTCACTGCACTTGACAC 59 52362821 52362842 ACTGTTTGAAGAGATACGTCAC 59 NA Rattus norvegicus 81 Lrrc26 ENSRNOG00000011457 ENSRNOT00000015242 3 1 1 82 3 2507223 2507318 GTCCCACTTCAGAAACTGAG 58 2507363 2507381 GTTGTCCGGAAAGTCTGTC 59 NA Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 1 1 1 81 10 34218917 34221542 TGGATCAGGGTTTGAGGAG 59 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081304 1 1 7 60 20 2516016 2516034 CAGCTTCTGGAGGTAGAGG 59 2516054 2516076 TGTAGTCTTAGATGGTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC129162.1 ENSRNOG00000014180 ENSRNOT00000019177 1 1 1 80 9 15310119 15310140 ATATCAGCCAAGCTTCAAACTG 59 15310180 15310832 AGTAGCGTTCATCACTGTCC 60 NA Rattus norvegicus 81 Bpifb5 ENSRNOG00000025238 ENSRNOT00000034798 1 1 1 80 3 149711367 149711795 ACACATCATTCTTCCTCCTG 57 149711838 149711856 GCTCCTTCTGTGAACTCTG 58 NA Rattus norvegicus 81 Bles03 ENSRNOG00000020551 ENSRNOT00000027869 3 1 1 126 1 220806792 220807468 AGGATGGAACCAAATGAAGAG 58 220807556 220807574 CATCAAATACCAGCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Emp2 ENSRNOG00000002664 ENSRNOT00000003615 3 1 1 80 10 5455769 5460794 TCAACCATTGACAATGCCTG 59 5460837 5460855 ACAGTTTGTGCTGTTGGTG 59 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346,ENSRNOT00000004524 3 2 2 80 10 107521532 107521553 CTATGCAGCTTACAGATATGCT 58 107520426 107521495 GCATAGACTCTACCATAACTGTC 58 NA Rattus norvegicus 81 Lcn5 ENSRNOG00000058597 ENSRNOT00000061855 1 1 1 80 3 2877781 2879303 CTACTACAGTGAGGACCACTG 59 2879345 2879363 CTGGTGACCTGAAACTTCG 59 NA Rattus norvegicus 81 Rn60_2_1398.1 ENSRNOG00000051202 ENSRNOT00000076371 2 1 1 60 2 120050030 120050050 ATTCATCTGAGAATGGTGAGG 58 120050072 120050090 CTGCTCTGTGATGACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myt1 ENSRNOG00000017346 ENSRNOT00000031448 3 1 1 80 3 177328031 177328458 CTTCACACCGGAGTTTGTC 59 177328502 177328520 CCTCCTTGTCATCCTTGGT 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 2 1 1 73 20 2541198 2541217 AATACACATGCCATGTGGAG 58 2541022 2541162 CATACTGGACTGAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Fam98a ENSRNOG00000030328 ENSRNOT00000052131 3 1 1 81 6 21055402 21058267 GGCAACTAACAGTCCAAGTG 59 21058309 21058329 AGGATATGGGCAGTTCATCTC 60 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 1 2 2 80 3 46513066 46513729 GCTGGAGATCAAATTCACTGG 59 46513006 46513027 ATCCATTCTTCCTTTCCTTCCT 59 NA Rattus norvegicus 81 Kctd13 ENSRNOG00000020010 ENSRNOT00000027129 1 1 1 89 1 198374241 198374259 GAAGTTGTCGCCACTATGC 59 198374312 198374426 TTTACCACAGGCTTGGAGG 60 NA Rattus norvegicus 81 LOC102551255 ENSRNOG00000049257 ENSRNOT00000074410 3 1 1 60 1 129613622 129613640 TACTCTGGGCACGTATCTC 58 129613663 129613682 GAGCACAAAGGGAATGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp667 ENSRNOG00000033906 ENSRNOT00000063956 2 1 1 80 1 71283060 71283080 CTTGTTGGAGAAAGGGAAAGC 60 71273094 71283022 TCATCCTTAGACCCTAATTCAGG 59 NA Rattus norvegicus 81 Olr1052 ENSRNOG00000033400 ENSRNOT00000049493 2 1 1 60 7 16432318 16432337 CAGTAACAAGATCTGCCACC 59 16432277 16432296 AATTACCAAGAAACCAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mad1l1 ENSRNOG00000001265 ENSRNOT00000001709 1 1 1 80 12 16437548 16475125 AATCTCAGGACTCCAGAGG 58 16475168 16475187 GCTATTCTTCTCCTTCAGCG 59 NA Rattus norvegicus 81 Fasn ENSRNOG00000045636 ENSRNOT00000073321 3 1 1 80 10 109992559 109992925 AAGTCCTTGTCCAGGTACG 59 109992497 109992515 TGGAGATGGCGGAAATCAG 60 NA Rattus norvegicus 81 Bcap29 ENSRNOG00000007884 ENSRNOT00000010631 1 1 1 80 6 50889069 50889088 ACCATGAAGATTCAGTCGGA 59 50884785 50889029 TAAACGGTTCTGAAGTTCTGAG 59 NA Rattus norvegicus 81 RGD1565158 ENSRNOG00000040121 ENSRNOT00000061709 3 1 1 80 10 1834707 1834729 TCTACAGTAGAGCACTTCATCAC 60 1834765 1837699 ATAGTGTAGTGAAGTCCTGTTCC 60 NA Rattus norvegicus 81 LOC100909613 ENSRNOG00000050749 ENSRNOT00000048907 3 1 1 60 3 103463747 103463765 AATGAAGAGGGCAATGAGG 58 103463786 103463807 TCAAGAGATTTGTCTATAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000005428 3 1 4 80 10 67573862 67573882 CTCCAGTGACCAAGTAAACTC 58 67579788 67579967 GTCTTCCCAACTCTAGAATGC 59 NA Rattus norvegicus 81 Agmat ENSRNOG00000012315 ENSRNOT00000016648 3 1 1 83 5 160318241 160318260 CCATAGATGCCTTGGATCCT 59 160318306 160320146 TCTCCAGAGCCTGACTAGG 60 NA Rattus norvegicus 81 RGD1563562 ENSRNOG00000042222 ENSRNOT00000058288 1 1 1 80 2 132275154 132276361 CTATGAGGGCATTATAGATTCAGAG 59 132275098 132275122 GGTAGATTTAGATAAGGTACTGGTG 59 NA Rattus norvegicus 81 LOC316935 ENSRNOG00000046132 ENSRNOT00000043153 1 1 1 86 16 45820 45841 AGAAGTGTAAATTCGAGAGGGA 59 44787 45773 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 3 2 2 80 8 97451878 97454729 TCACACTCAATGATGAGGC 58 97454773 97454791 CTTCAGTCACCTCAAAGGC 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076030 1 1 4 80 15 36905013 36905033 ACCAAGTTGGAACAAGAAGGA 60 36905069 36910632 CCATGGAATATTCCTAGAAATGAGG 59 NA Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 2 1 1 61 10 42942659 42942678 CACTATGGAGAAGTCCACTG 58 42942702 42944135 TTTCCACCTCTGCTATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc64b ENSRNOG00000003457 ENSRNOT00000004638 3 1 1 81 10 12986331 12986433 CAGGCAGAGAATCAGATGC 58 12986477 12986496 CTTTGTCCACTTCTTCACGA 58 NA Rattus norvegicus 81 Tdrd3 ENSRNOG00000009034 ENSRNOT00000012440 2 1 1 81 15 70801922 70801940 GGGAGGTTTCACAGAAGGA 59 70801982 70802454 GCTTTCTCATCAACCAGTTCTC 60 NA Rattus norvegicus 81 Btk ENSRNOG00000052407 ENSRNOT00000077547 1 1 1 80 X 105367565 105367587 CAAAGCAGTTCCTTCATAGAGAC 60 105365993 105366086 ATAGCACAACCCTTGAAACTC 59 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000055523 ENSRNOT00000052183 3 1 1 80 10 60812200 60812352 CCTCCATCCTTAAGGTTCCT 59 60812395 60812413 GTGACACCACAGACAAGTG 59 NA Rattus norvegicus 81 RGD1562977 ENSRNOG00000034215 ENSRNOT00000046165 3 1 1 60 12 888611 888629 CACAACTCTGAACCGTTGC 60 888569 888589 CTCGAATTTAGCAGACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010747.1 ENSRNOG00000050241 ENSRNOT00000075623 2 1 1 81 2 150013516 150014365 TGTTGTGGCAATAGACTACAG 58 150014405 150014426 GAACTTGGTCACATAAACACAG 58 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076016 1 1 5 60 13 77945127 77945148 CCTTTAGGGACTGAGTTATGAC 58 77945169 77945187 TCATCACCAGCCATTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armcx6 ENSRNOG00000037707 ENSRNOT00000029807 1 1 1 83 X 105567855 105567873 CTCCGTGGAGGGAATACAG 59 105567455 105567811 TGTGATTCTTGTGGTGAATCTC 59 NA InUTR Rattus norvegicus 81 Armcx6 ENSRNOG00000037707 ENSRNOT00000029807 3 1 1 128 X 105568233 105568251 CTTGGTTGGAACCTTGCTG 59 105567455 105567811 TGTGATTCTTGTGGTGAATCTC 59 NA InUTR Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 3 1 1 95 10 84032661 84033606 GAAAGCAGCATTTGCAGAG 58 84033665 84033683 CCCTTGCTATAGGGAATGC 58 NA DesignNoJunction Rattus norvegicus 81 Olr332 ENSRNOG00000024746 ENSRNOT00000035813 2 1 1 60 1 229461843 229461862 TAGTACCAGTGCTTCTCACC 59 229461885 229461903 CATGAAGAGACCAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000061166 3 1 2 84 2 30674224 30674329 AGATGAGGACAGGGTTGTG 59 30674376 30674395 AAAGAAATCACAACCGTGGT 58 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050,ENSRNOT00000090654 3 2 2 80 14 35117980 35149505 CCAGACAGGGACTTCTCAG 59 35117918 35117936 ATTAACTCTGACTGGGCCG 60 NA Rattus norvegicus 81 Epc1 ENSRNOG00000014834 ENSRNOT00000019968 1 1 1 80 17 57308226 57308247 TGATGGGATTCAAGATGAAGGA 59 57308066 57308186 CCTTGTATACTCCTGAGGCG 60 NA Rattus norvegicus 81 Plp1 ENSRNOG00000002419 ENSRNOT00000003283 3 1 1 80 X 107508262 107508280 TCCAAATGACCTTCCACCT 59 107508323 107509230 CAATCATGAAGGTGAGCAGG 59 NA Rattus norvegicus 81 Fn3krp ENSRNOG00000036660 ENSRNOT00000054916 3 1 1 91 10 110621411 110621677 CTCTGCAGTTGAAGATTCCTG 59 110621730 110621748 TTCTGCTACATTCCCTCCC 59 NA Rattus norvegicus 81 Kank4 ENSRNOG00000007779 ENSRNOT00000066139 3 1 1 80 5 117397195 117399227 GTTAACGGTGGCTATGAGAC 59 117397134 117397153 CTCACTGTCAGACAAGTCCT 59 NA Rattus norvegicus 81 Brca2 ENSRNOG00000001111 ENSRNOT00000001475 1 1 1 80 12 504334 507375 AGCACAGCAGATTTAGGAC 58 507416 507437 AGGTTCAGTATTATATGGTGGG 57 NA Rattus norvegicus 81 Atox1 ENSRNOG00000013118 ENSRNOT00000017588 3 1 1 81 10 40798826 40798845 GTTCTCTGTGGACATGACCT 60 40794223 40798782 GTTGAACTCCACTCCTCCC 60 NA Rattus norvegicus 81 LOC688812 ENSRNOG00000054096 ENSRNOT00000084052 1 1 1 86 12 4113272 4113297 CAGGACACTTTACTCAGTAATGTC 59 4113342 4113360 CCATCAACTAGTCCCAGCT 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084787 3 1 11 80 6 99067065 99067086 AAGATGGCTTTACAACAGTCAC 59 99067125 99068600 TGTATGCACATCTGCTTTCTG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084724 3 1 11 60 6 99033055 99033075 TCAAAGCCATCCTGTTATCCA 60 99033095 99033115 TGCTTGAGATGTTCTTCAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905,ENSRNOT00000078093,ENSRNOT00000058735 1 3 11 70 6 99152516 99152534 CTACCATTGCAACTGCTGC 60 99152568 99152586 TAGTCATCTTCGGAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1166.1 ENSRNOG00000031770 ENSRNOT00000041702 2 1 1 60 7 116617065 116617085 TTGTAGACATCAAGGGAATGG 58 116617025 116617043 CCGTGGTAACATGTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524,ENSRNOT00000044095 1 2 2 80 13 34249225 34250247 GTTTCAGGACATTCCAAAGAGG 60 34249166 34249187 GTCTTCAGGGATGTTAGATGTG 59 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 2 1 1 80 10 84786637 84786657 GGACCTTCTTAAAGGTACCGA 59 84786242 84786595 TCCTGCCAATCCTTCATCC 60 NA Rattus norvegicus 81 LOC100910010 ENSRNOG00000048560 ENSRNOT00000075191 2 1 1 60 2 115188649 115188667 CACGATCATCCTGATCCTG 58 115188690 115188709 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem221 ENSRNOG00000018167 ENSRNOT00000024424 1 1 1 84 16 19985017 19985035 TCCTCTGAAGATGAGCCAG 59 19984342 19984969 TCTCCGTTTCCTCATCCTG 59 NA Rattus norvegicus 81 Gimap6 ENSRNOG00000033338 ENSRNOT00000049038 1 1 1 80 4 78342649 78342667 GGAAATCCACTGGAGTCCA 59 78339923 78342605 TTCTTCCATCACTGGGCTG 60 NA Rattus norvegicus 81 Deaf1 ENSRNOG00000017960 ENSRNOT00000048817 1 1 1 80 1 214312393 214313247 CAGGACATGTCCTGTCTGG 60 214312331 214312355 GTACAACTATTAGTGTGGCTTTCTC 60 NA Rattus norvegicus 81 Mfsd6l ENSRNOG00000037712 ENSRNOT00000057223 3 1 1 60 10 55139415 55139435 GCTAACCTGAGTCTACTTCCT 59 55139456 55139475 TCTTTGACACATTGACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pitpnm1 ENSRNOG00000018553 ENSRNOT00000025084 3 1 1 80 1 219352116 219353466 TCCATGATGTAGGTCTGCG 59 219353508 219353528 TCAGTTCAATCCACTCATCCT 59 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060,ENSRNOT00000018515 2 2 2 80 14 81828427 81829579 CACATCAAGAAACTGGAGGAG 59 81829621 81829639 CTTTAGGAAGCGATGCTCC 58 NA Rattus norvegicus 81 LOC100362532 ENSRNOG00000050269 ENSRNOT00000075170 2 1 1 60 4 161309097 161309116 AAGTTGAGAAAGCATTGGGT 58 161309056 161309075 AGCTTGAATCCCATACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000034124 1 1 2 80 12 2601532 2603250 GCATGTCCCAGTACTTCCA 59 2601470 2601488 CCTGGTAAGCCTTGAGGAC 60 NA Rattus norvegicus 81 RGD1565212 ENSRNOG00000012402 ENSRNOT00000016562 1 1 1 80 15 47337441 47338855 GAAGTCTTCCAGTTTCAGAAACC 60 47337383 47337402 CCTCAGCTCATCAAACTCCT 60 NA Rattus norvegicus 81 Nxph3 ENSRNOG00000005185 ENSRNOT00000007133 1 1 1 121 10 83330080 83332683 CTCTATCTGGTCATCTGCG 57 83329977 83329997 TTAGGTGAAATGTGACCTCTC 58 NA Rattus norvegicus 81 Igfals ENSRNOG00000015061 ENSRNOT00000020233 1 1 1 160 10 14240398 14240416 TACAAGGAACAATGGCCCT 59 14241656 14241674 ATCATGGCTGCAGGTACAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07054370.1 ENSRNOG00000046585 ENSRNOT00000072917 2 1 1 81 3 150188564 150188585 GCAAGAAACAAGAGTTTCTGGA 60 150188626 150221624 GTTCTCTTGTCTTTGGTGCC 60 NA Rattus norvegicus 81 Fbn2 ENSRNOG00000043219 ENSRNOT00000066548 2 1 1 80 18 53103909 53105013 ACGACTGCCTAGACATAGAC 59 53103848 53103867 AGCCGATTTCATTGAAGCAC 60 NA Rattus norvegicus 81 Olr1424 ENSRNOG00000055773 ENSRNOT00000041113 1 1 1 60 10 44146283 44146303 GTGGTCATCCTCTTCTATGGT 59 44146243 44146261 TGTGGAATGAGGTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307929 ENSRNOG00000011887 ENSRNOT00000016084 2 1 1 80 10 65525354 65525372 TCAGAACACAGAGGTGGAG 59 65525414 65525857 TGAATGGAGAATAGTTGGCAG 58 NA Rattus norvegicus 81 Wdr37 ENSRNOG00000016834 ENSRNOT00000022688 3 1 1 80 17 58013222 58017038 ACCAGCAAGATTGTCTCCA 59 58017081 58017100 CCTGTGGCCAATATACTCCT 59 NA Rattus norvegicus 81 AABR07000747.1 ENSRNOG00000054246 ENSRNOT00000074143 1 1 1 80 1 24981964 24982451 CATGAAGAACAGGCCACAC 59 24981902 24981920 AGAATTGACATGACCGCCT 59 NA Rattus norvegicus 81 F2 ENSRNOG00000016325 ENSRNOT00000022233 1 1 1 80 3 80534385 80534547 ACAGTAACCAGTTTGCTCC 58 80534323 80534341 GTTAGTTGTCCACGTCTCC 58 NA Rattus norvegicus 81 Jmjd7 ENSRNOG00000050072 ENSRNOT00000067181 1 1 1 80 3 111823624 111823756 CTGTATTGCTGTGAATTTCTGG 58 111823796 111823815 CTAGTGAGGGAGTCCATCAG 59 NA Rattus norvegicus 81 Jmjd7 ENSRNOG00000050072 ENSRNOT00000067181 3 1 1 81 3 111823623 111823755 GCTGTATTGCTGTGAATTTCTG 59 111823796 111823815 CTAGTGAGGGAGTCCATCAG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005,ENSRNOT00000079417 1 3 3 80 15 61860423 61866336 AGGGCATTAGGACGATACAG 59 61866375 61866397 GTGTTACTGTATGTAGCTGTTGG 60 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000088730 2 1 2 93 7 142877268 142877286 CGGCTGCTCAAATTCATCC 60 142877343 142878266 ATCTGCTGTGGGTATCTGC 60 NA InUTR Rattus norvegicus 81 Adra2b ENSRNOG00000013887 ENSRNOT00000018584 1 1 1 60 3 119806504 119806522 GTGGCTACTCTCATCATCC 57 119806546 119806564 AGAAGTACCAGTAGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha1 ENSRNOG00000017525 ENSRNOT00000024037 3 1 1 80 4 71752053 71752072 AAGGTATCTGACTTTGGCCT 59 71751866 71752012 GATAGGGATCTTTCCTCCCTG 59 NA Rattus norvegicus 81 Phox2a ENSRNOG00000019706 ENSRNOT00000026702 1 1 1 138 1 166894022 166894040 AGGCTTCCAATACAGTCCC 59 166894142 166896217 GAACTTGTAGGGAACTGCC 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 3 2 2 80 17 53991496 53991519 GTAGAAGAGTTGAAGTTAACGGAG 59 53991558 54003854 CTAACCAGAGTCCTGCCAC 60 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 2 2 2 80 12 1693578 1695548 TCTATTCTTGAGGAAGAGGCAG 59 1693519 1693537 CTGGCACTGAGGTACTCTG 60 NA Rattus norvegicus 81 AABR07029559.1 ENSRNOG00000052567 ENSRNOT00000084710 1 1 1 88 10 34016129 34016151 GCACTAAGGATAGAGAATGAACC 59 34015211 34016082 TCTAATCAGGAAGTCCGGTG 59 NA InUTR Rattus norvegicus 81 AABR07043892.1 ENSRNOG00000050326 ENSRNOT00000071024 1 1 1 142 19 46164476 46167630 GATTACGTCTTTGTCGTGC 57 46164352 46164370 AGATCCTGTCCAAATGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 1 2 2 80 14 11201127 11201145 ATACACAGACGAAGAGCCA 58 11201186 11201312 ACTTTGATTTCACACTTCCCAG 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 3 2 2 80 4 181079315 181079337 GAAGATGTTCTACAGCTTTCAGG 60 181079375 181080129 AATGTCATCATGTCACCTCCA 60 NA Rattus norvegicus 81 Glis2 ENSRNOG00000004766 ENSRNOT00000006680 1 1 1 81 10 11158673 11158775 AATGCCAGGTACAAGATGCT 60 11158611 11158629 AGCTCTTGTTACAGGTGGG 59 NA Rattus norvegicus 81 Tmem178b ENSRNOG00000047635 ENSRNOT00000073638 1 1 1 83 4 68012057 68049812 CTTCCTCATGGGAGGAACC 60 68049859 68049877 CGTGGGTAACGTGATAGCT 60 NA Rattus norvegicus 81 Kcnk5 ENSRNOG00000047005 ENSRNOT00000075153 1 1 1 80 15 4590330 4590350 GACTTTCAACAACTGGAACTG 58 4590392 4591307 GCCACATTACCATAACCGA 58 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 1 1 1 60 4 170104619 170104640 GCTTCGGGATATTAAGGAAAGG 59 170104580 170104599 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F8a1 ENSRNOG00000037327 ENSRNOT00000042490 3 1 1 60 1 147022472 147022491 TTTGTTATTGCAGTCCCTGG 59 147022511 147022532 CTTCTTGATGCCTTCAGTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst4 ENSRNOG00000009577 ENSRNOT00000012773 1 1 1 80 2 229328935 229370323 ATTTGCCCTGGAACATGGA 60 229370365 229370385 ATATGGACTGGGTAGACTCCT 59 NA Rattus norvegicus 81 AABR07049880.1 ENSRNOG00000049397 ENSRNOT00000010885 2 1 1 80 5 142312592 142312612 TTGTTCTCGAATGCAGTTCTC 59 142312654 142313835 AGCCACAAGATCACATCGT 59 NA Rattus norvegicus 81 Hsd17b2 ENSRNOG00000013982 ENSRNOT00000018795 3 1 1 81 19 50289485 50299007 ACAAGACAAAGGACTGTGG 58 50299052 50299070 GGTCATGGGAATGAGTTCC 58 NA Rattus norvegicus 81 Cib4 ENSRNOG00000009898 ENSRNOT00000013123 1 1 1 80 6 27253839 27253857 CGGGCAAGCACTATAAGGA 60 27253901 27287163 CTCTGAAAGGGTTGACCCT 59 NA Rattus norvegicus 81 Kcna1 ENSRNOG00000019750 ENSRNOT00000026731 2 1 1 60 4 159191115 159191134 GTACATGGAGATCGAAGAGG 57 159191074 159191094 GATATTAGCCTGCCTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 2 2 2 80 1 199688193 199688213 CTGAAGAGTTAGAGGGTCCAG 59 199688255 199688358 ACTGGACCTCTTCAATCCC 59 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 3 2 2 80 1 199682750 199682769 AATCCTGCTGACATTCTGGT 59 199682809 199683357 ATTGGTTCTGAACATAGACCAC 59 NA Rattus norvegicus 81 Ehbp1 ENSRNOG00000008917 ENSRNOT00000012131 2 1 1 80 14 106872708 106872726 GGATGAACTAGTGGCCCTG 60 106872440 106872665 TCTTCTTCAGCCTGCTTCTC 60 NA Rattus norvegicus 81 LOC684471 ENSRNOG00000048793 ENSRNOT00000074980 3 1 1 60 10 34415218 34415239 ATGATAGGTACATGGCTGTCTG 60 34415260 34415278 GCCTTCCAATTCATCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp42 ENSRNOG00000001059 ENSRNOT00000001404 2 1 1 80 12 12868132 12868325 TGCTACATCAAGGCTAGCA 59 12868366 12868387 AAGCACCGATCTAATATCACTG 58 NA Rattus norvegicus 81 Map3k10 ENSRNOG00000023521 ENSRNOT00000034609 1 1 1 80 1 84485947 84490478 CTCAAGTCCATCAACATCCT 57 84485886 84485905 GAAGTCTGTGATCTTGAGCA 58 NA Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 1 1 1 60 10 11123261 11123279 ATCTCCAACGAGACCTTCC 59 11123219 11123237 GGTTCTTGCCCAGGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 3 1 1 60 10 11122017 11122038 TGCCACCTATTCTATCTGTGTC 60 11121978 11121996 CTCCTCACCTTCAGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna2 ENSRNOG00000015329 ENSRNOT00000020795 2 1 1 80 10 95200670 95200688 AGAGCCATGAGAACGAGTC 59 95200364 95200628 GATCTTCCTCTTCCTCCACTG 60 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 2 2 2 80 7 24070386 24072229 CATATTCCTGTAGTTCAGCTCC 59 24070327 24070345 TGAATAGTTCTCCTCGCCA 58 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830,ENSRNOT00000060810 1 2 2 80 6 27998999 27999021 GTCATACGACTATCAACGTACAG 59 27999055 28004521 GATATCAACGAGATGAAGGTTACAC 60 NA Rattus norvegicus 81 Spata25 ENSRNOG00000015744 ENSRNOT00000021143 3 1 1 69 3 161294037 161294055 CTCATCTGGGTCTTCTGCC 60 161293616 161293634 CTATAGAGGCCAAGGGACG 59 NA DesignNoJunction Rattus norvegicus 81 Arid4b ENSRNOG00000049751 ENSRNOT00000010836 2 1 1 80 17 53899572 53899592 GATGGAGATGAGAAGACACTG 58 53895941 53899532 GTCTAGTGTTTCACTTTCAGC 57 NA Rattus norvegicus 81 Sgms2 ENSRNOG00000011284 ENSRNOT00000015020 3 1 1 80 2 236465911 236472452 GTGCTCCAAAGCTCAATGG 60 236465849 236465867 TGATGGACAATCCACCACC 60 NA Rattus norvegicus 81 Gucy1a2 ENSRNOG00000029876 ENSRNOT00000046058 3 1 1 80 8 775990 776010 TGATGGCCTTAAAGATGATGG 58 776052 876326 GAATGCCTATCCGCATCTG 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000087370 1 1 3 73 7 143059774 143059792 ACTAGACACGCTGAAGGAG 59 143060089 143060107 CCTCACTGGTCCTTTAGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ago4 ENSRNOG00000025596 ENSRNOT00000035373 1 1 1 80 5 144527821 144533769 TTGCTAAAGAGCTTCACTGAC 59 144527761 144527779 GCAGAAACATGGTTGACCC 60 NA Rattus norvegicus 81 Nov ENSRNOG00000008697 ENSRNOT00000011904 2 1 1 80 7 94378434 94381507 AGCAACAGACATGAAAGGT 57 94381549 94381569 GTGCAATTCTTGAACTGTAGG 58 NA Rattus norvegicus 81 RGD1562037 ENSRNOG00000027938 ENSRNOT00000033359 3 1 1 121 17 55674390 55674408 GTAAAGATCAGGCCTGGCA 60 55670554 55674307 ATCATAGGAATCTGCACACCA 59 NA Rattus norvegicus 81 Olr784 ENSRNOG00000050402 ENSRNOT00000074456 2 1 1 60 3 103217277 103217297 GCACCCAAGATGATTTATGAC 57 103217237 103217258 TACAACCTCCAAATGAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 3 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833086 TGTCAATGTTTGTGACCCAG 59 NA Rattus norvegicus 81 Camkmt ENSRNOG00000030629 ENSRNOT00000048550 2 1 1 80 6 8711563 8711582 CTGTTCCTGGACCAGTACAG 60 8711622 8723419 AAATACCAATGCTTTCCCTGAG 59 NA Rattus norvegicus 81 Ssna1 ENSRNOG00000011093 ENSRNOT00000014993 3 1 1 97 3 2490140 2490331 GGTCAAGTGCATCGAAGAG 59 2490061 2490079 TCACCTCATTCTGTAGCCG 59 NA Rattus norvegicus 81 Igfbp2 ENSRNOG00000016957 ENSRNOT00000023068 3 1 1 80 9 80142458 80142478 TCCTCTGGAACATCTCTACTC 58 80142519 80144341 GACATCTTGCACTGTTTGAG 57 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000083955 2 1 4 81 7 140400778 140401203 ACATACACTACACGGGCAG 60 140400715 140400735 CCAAGTTCTATGACCAGAGGA 59 NA Rattus norvegicus 81 Rn60_X_0651.2 ENSRNOG00000051255 ENSRNOT00000076745 1 1 1 60 X 64157334 64157352 CTGACATCCCTAGCAACCT 59 64157292 64157311 ATGTTGCCATGACACTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.2 ENSRNOG00000051338 ENSRNOT00000076189 1 1 1 60 X 68596493 68596511 CTCTCACTCTACCGTTCCT 58 68596451 68596469 TCAATCATCCTGGCTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.2 ENSRNOG00000051338 ENSRNOT00000076189 3 1 1 60 X 68596463 68596482 GCTCTATCCTGAAAGGTAGC 58 68596422 68596443 GTTTCTTCTTTCACTCCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyrm9 ENSRNOG00000037204 ENSRNOT00000056192 1 1 1 82 10 66108655 66108673 TTACTTACTGCGTTGCTGC 59 66108719 66110742 CTTGGAAACTCTGCCTGAC 59 NA Rattus norvegicus 81 Senp5 ENSRNOG00000024794 ENSRNOT00000034757 1 1 1 80 11 72049293 72049313 CAGAATTGGTTGAATGACCAG 58 72049539 72053611 GAAGAAGTGGACCTTGTCG 58 NA Rattus norvegicus 81 Adam30 ENSRNOG00000019044 ENSRNOT00000025733 3 1 1 60 2 200330220 200330238 AAGCCCTCTCCAGATTTCC 59 200330262 200330280 TTGTCTTTCTTCAGGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563056 ENSRNOG00000009178 ENSRNOT00000012164 2 1 1 83 5 50215499 50215517 CTTGAAGATGCAGATGCCA 58 50213244 50215454 AGCTTCTAGAGCCTTTAAGTC 57 NA Rattus norvegicus 81 LOC685351 ENSRNOG00000038499 ENSRNOT00000058683 1 1 1 81 13 84757291 84757730 CAGTTCCAGACAAAGGTGTG 59 84757229 84757247 CAGTCTCTACCACCACGTC 60 NA Rattus norvegicus 81 Rn60_X_0690.1 ENSRNOG00000051240 ENSRNOT00000075845 1 1 1 60 X 68088906 68088925 ATGCTCATTGCCTTGATCCT 60 68088865 68088889 GAATACCTTCCTGAATGATGAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs3 ENSRNOG00000015736 ENSRNOT00000021155 3 1 1 81 5 162834631 162834652 CACTACTTCATCTGTGATGTGG 59 162834694 162835307 TGATGTCACCCACCTTCTC 59 NA Rattus norvegicus 81 Rn60_14_1004.2 ENSRNOG00000060606 ENSRNOT00000082964 2 1 1 60 14 100173360 100173381 ATGACAGATACAACGAGATCCA 59 100173402 100173420 ACAGACTTAGGACCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061152.1 ENSRNOG00000005867 ENSRNOT00000007700 2 1 1 80 4 106983074 106983121 TCGCTCTTACAGAGATTATCG 57 106983014 106983032 CAGTTCCCACCATGATTCC 58 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 3 2 2 141 4 85560616 85560634 ATTGAGATCATTGGCACCC 58 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000047131 ENSRNOT00000071042 1 1 1 83 16 4998027 4998045 GAAACTCTGGCTGGAGAGG 60 5002669 5002687 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 2 2 2 80 11 68150279 68150298 CCCTGATTTAAAGCGTTTCC 58 68148922 68150236 ACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Ngly1 ENSRNOG00000006143 ENSRNOT00000008289 2 1 1 80 15 10422186 10423440 TCTAAAGATGAGGTGGTTGAC 58 10422126 10422144 TTTGACCTTGGTTCTCCTG 57 NA Rattus norvegicus 81 Nuggc ENSRNOG00000018238 ENSRNOT00000024527 3 1 1 80 15 49053929 49053949 AGCATCACTACCATGTTAACC 58 49053990 49054920 CTGTTCATTCCGGACATCAG 59 NA Rattus norvegicus 81 Rad54b ENSRNOG00000039949 ENSRNOT00000061370 1 1 1 80 5 25199622 25204187 CTTCTGCTTCCAAGGAAGAG 58 25204227 25204248 TAAGGATGAAACATCCAGTGAG 58 NA Rattus norvegicus 81 Ostf1 ENSRNOG00000012156 ENSRNOT00000016871 3 1 1 82 1 234789416 234792167 GAACCAGCAGAACAAGCTG 60 234792210 234792231 CTAGTAGCAACTGGACAATGTC 59 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048400 ENSRNOT00000072216 2 1 1 60 2 234298878 234298897 CCATACGTTATGCACCTCTC 58 234298918 234298938 CACACTTGTATACTGGTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910849 ENSRNOG00000047384 ENSRNOT00000072173 1 1 1 122 11 72086623 72086641 CAGTCACCTGAGGTCATGG 60 72084675 72084693 GAAGGTAGAGCCAGAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 1 2 2 80 7 35086882 35090770 GGATGAAGCAAGACTCCGT 60 35090814 35090832 TAGAAGCTGCACAGTTGGA 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000016220 2 1 2 80 3 149240735 149240754 GATGGTGCGAAAGAATCCTG 59 149240795 149245757 AGCTTCAATACTTTGACCTGC 59 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 2 1 1 80 2 81137602 81141737 CCAGAATCTACAGCAGTTCC 58 81141777 81141798 TCGGACATTTCAAAGTAAGGAC 59 NA Rattus norvegicus 81 Ms4a1 ENSRNOG00000020945 ENSRNOT00000028433 2 1 1 80 1 227431362 227432436 CTGTGTTCTTGGGCATTCTG 60 227431301 227431319 CATTCTCTACAACACCGGC 59 NA Rattus norvegicus 81 Npvf ENSRNOG00000010806 ENSRNOT00000014437 2 1 1 82 4 80393424 80393443 CCAGTGAATTGCTCTATGCC 59 80391866 80393379 GAACACCCGTTTCCTAGGT 59 NA Rattus norvegicus 81 LOC689968 ENSRNOG00000042265 ENSRNOT00000066536 1 1 1 80 10 31651143 31656927 TTCAACCAGGAAGCAATTCG 59 31656968 31656988 TCACAAGAACTAGAAGCAGCA 60 NA Rattus norvegicus 81 Sh3d21 ENSRNOG00000024566 ENSRNOT00000045841 3 1 1 80 5 144175594 144175613 CAGACAACTTTGTCATCCCA 58 144163980 144174108 TAATAGGAGCTGATTCCCGA 58 NA Rattus norvegicus 81 Tmem223 ENSRNOG00000019266 ENSRNOT00000026141 2 1 1 66 1 224971089 224971107 GATACGGGTTAGCTGTTGG 58 224971751 224971769 GAGTAGAGGAGACCAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07049780.1 ENSRNOG00000047815 ENSRNOT00000071641 3 1 1 60 5 137616978 137616999 TTGCTCACTCTAAGACCATCTC 60 137616939 137616958 GCACCAAACACGTACATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elfn1 ENSRNOG00000022767 ENSRNOT00000033551 2 1 1 133 12 16753145 16813485 TCAGCAGAGAACACTTCAGG 60 16753031 16753049 GAGAATGGCTCCCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Acot6 ENSRNOG00000029637 ENSRNOT00000058101 2 1 1 80 6 107585399 107585418 ATTTGAGCCAAGTGCATCTG 59 107585459 107589780 TATTTGGACCTTTCACCTGTG 58 NA Rattus norvegicus 81 Olr1068 ENSRNOG00000050013 ENSRNOT00000041565 3 1 1 60 7 9427442 9427461 ATTCTGCTGGGATTCTGGAC 60 9427401 9427422 GCAAGAACAGTAAGAACAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckap4 ENSRNOG00000008016 ENSRNOT00000010601 1 1 1 81 7 24939666 24945234 GAGCAGAAGGTACAGTCTC 57 24945278 24945297 TGAGATCCTGTTTATGCTGG 57 NA InUTR Rattus norvegicus 81 AABR07057787.1 ENSRNOG00000047389 ENSRNOT00000074064 2 1 1 117 7 87919478 87919496 CTTCACAGCGATGAGAGGA 59 87919360 87919397 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 3 2 2 80 X 68630152 68631796 TCACTTGCATTGATGCTACAG 59 68631836 68631856 AACGAACACTTCTGCAAACTC 60 NA Rattus norvegicus 81 Zkscan5 ENSRNOG00000059552 ENSRNOT00000090073 3 1 1 82 12 11170289 11170307 CTCCAGTCACCAGTTTCTG 58 11164730 11170243 GAACAGGAAGGGCATTCTC 58 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 1 2 2 80 13 48648525 48648544 ACAGGATCTGGATAGCAAGC 60 48648586 48649272 GACAGATCACTCTTGTTGGC 59 NA Rattus norvegicus 81 Tas2r137 ENSRNOG00000030413 ENSRNOT00000046917 2 1 1 60 4 68654149 68654167 GAAACCAAGATTGCCAGGA 58 68654190 68654209 AATCACCCACAAGGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691893 ENSRNOG00000045581 ENSRNOT00000073088 1 1 1 60 3 124460889 124460908 TTGATTGGCATACGAAGGTC 58 124460848 124460866 GTTCTCCATCTGTCATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp1 ENSRNOG00000003553 ENSRNOT00000004764 1 1 1 80 14 113203740 113203761 CGGAGGAAACCATTACATACAC 59 113212008 113212175 CATCAATATCTTTGCACTGCTG 59 NA Rattus norvegicus 81 Ccr9 ENSRNOG00000006311 ENSRNOT00000008269 3 1 1 80 8 132835314 132839692 CCACAGAATTCACAAGCCT 58 132839736 132839754 TCATGTAGTCGTCTGTGGA 58 NA Rattus norvegicus 81 Tsfm ENSRNOG00000048843 ENSRNOT00000071543 3 1 1 82 7 70318092 70318112 TGGGAGAAAGACTAAAGAAGG 57 70317186 70318048 CTGTCTCGCAGTTTACCTC 58 NA Rattus norvegicus 81 Havcr1 ENSRNOG00000007243 ENSRNOT00000009573 2 1 1 80 10 31825825 31825844 GAGTGGAGATTCCTGGATGG 60 31825885 31830709 GAGGACTTGTGGGAATTTCTG 59 NA Rattus norvegicus 81 Prox1 ENSRNOG00000003694 ENSRNOT00000004905 3 1 1 86 13 108406770 108406788 AGGAACTGTCCATCACCAG 59 108406837 108438728 TCTCTGGAACCTCAAAGTCG 60 NA Rattus norvegicus 81 Olr791 ENSRNOG00000045900 ENSRNOT00000074196 3 1 1 60 3 103447315 103447334 AACCTCTCCATTACCTGACC 59 103447274 103447295 GCAATCACTACAAAGAAGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 1 2 2 82 4 180131576 180132031 CATAGAGACAGAGGCACCT 58 180132077 180132095 GGATACGGAGGTTACTGGG 59 NA Rattus norvegicus 81 Olr590 ENSRNOG00000049292 ENSRNOT00000073455 2 1 1 60 3 75958425 75958445 TATCCTTGTGATACCGATGCT 59 75958465 75958485 TTTCACATCCTTGTTCCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdh2 ENSRNOG00000014490 ENSRNOT00000019507 3 1 1 80 2 240467715 240468908 TTACCCAGGTATTCAAACTCG 58 240468948 240468968 ATCTTCTCAATTTCTGAGGCG 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000086783 3 1 4 82 14 85883637 85886710 TTGAAAGAAGGAGTGAAGCAG 59 85886754 85886772 GTGGCAGCTCTAGAGTCTC 59 NA Rattus norvegicus 81 LOC298111 ENSRNOG00000050117 ENSRNOT00000048383 1 1 1 84 5 52653606 52653973 AGCTCTATGGAAGAACAAAGGA 59 52653543 52653561 TCCCTAGTGATTCCATGCG 59 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 3 2 2 80 7 143402864 143404909 CCAGACCAAGTTCCAAGAG 58 143402802 143402820 TCAGAGATCTCGTTCCTGG 58 NA Rattus norvegicus 81 Vom1r4 ENSRNOG00000045921 ENSRNOT00000052208 2 1 1 60 1 86533735 86533758 GGTTGTCATTCTCTATATGCACAG 60 86533776 86533795 GGAAACAGTGATGCTATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r86 ENSRNOG00000051609 ENSRNOT00000087374 2 1 1 60 4 88271788 88271808 TGGACTTCATCATCTCATCCA 59 88271830 88271848 GTCAGGATAACAGGGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362658 ENSRNOG00000023233 ENSRNOT00000074820 1 1 1 80 1 99489239 99493853 GTTGGTGTCAAGAAGTGGA 58 99493895 99493915 CCTTTCTGGTTTGAAATGCTG 58 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000067491 1 1 2 80 7 92241631 92241650 AGCTACGACTGGTCTATGAC 59 92241690 92255751 TCTTCTGTTTGAGTTTCTCCAC 59 NA Rattus norvegicus 81 Ifrd1 ENSRNOG00000050997 ENSRNOT00000073910 2 1 1 80 6 60145630 60145649 TGATGAGGAAGGAACTCAGG 59 60144768 60145589 GTCTTCGCACTCTTATCAAGG 59 NA Rattus norvegicus 81 P3h1 ENSRNOG00000053991 ENSRNOT00000084651 3 1 1 80 5 138285148 138285170 TCAGAACCTGGCTTACTATACAG 60 138285210 138287279 TATTCCTGGGCATTCTCCC 59 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121,ENSRNOT00000083127 3 2 2 81 4 130403290 130414380 CAATCACAACTTGATTGAACGG 59 130414420 130414440 TGACTTGGGAATCAAAGTACC 58 NA Rattus norvegicus 81 St8sia1 ENSRNOG00000014018 ENSRNOT00000018999 2 1 1 80 4 177106360 177114992 TTTGTCATGCGGTGTAACC 59 177106298 177106316 AGCTGTCACCAACTGAGTC 60 NA Rattus norvegicus 81 Ajap1 ENSRNOG00000050137 ENSRNOT00000071459 2 1 1 81 5 170625356 170627756 GGAAACCGATCCTCCTCTG 60 170625293 170625313 GTCAGCAGGAGATTTCAAACC 60 NA Rattus norvegicus 81 Nox4 ENSRNOG00000013925 ENSRNOT00000018990 2 1 1 80 1 150866579 150866601 TCTTCTGGTATACTCACAACCTC 59 150866640 150871124 GATACTTCAACAAGCCACCC 59 NA Rattus norvegicus 81 Nox4 ENSRNOG00000013925 ENSRNOT00000018990 3 1 1 80 1 150846856 150861940 GCTTCTCTTCACAACTGTTCC 60 150861978 150862000 TAGGTAGAAGCTGTAACCATGAG 60 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 3 2 3 80 13 77626389 77637133 ACTACCCTCACAGATCTGG 58 77637177 77637195 GGGAATGCTTTGTTTCGAG 57 NA Rattus norvegicus 81 Acd ENSRNOG00000038973 ENSRNOT00000059577 1 1 1 80 19 37666567 37666585 TGCTACAAGGTCCCTTCAC 59 37666426 37666523 TGAACACAGCTTCTTCCGT 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000020587 2 1 4 80 1 189312525 189312722 CTTTCCAGTTACAAGTTCCCAC 60 189312763 189312781 CCAACTCTCCAGAGTCTCC 59 NA Rattus norvegicus 81 Olr587 ENSRNOG00000050681 ENSRNOT00000073336 2 1 1 60 3 75923364 75923383 AGGGTATGCTACCAATTCCT 58 75923323 75923344 GTATCAAAGCATCTGTCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifc ENSRNOG00000022937 ENSRNOT00000037290 3 1 1 80 7 23867167 23871704 CGACTATGGTCTTCAAGTTGG 59 23871745 23871764 TCAGAACCGTTCAAATCTGG 58 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 3 2 2 80 12 18699361 18701987 GAGTCTCACCAAGGTTTAACTG 59 18702028 18702046 GCTAGTGGTCTCATAGCCG 60 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 3 2 2 81 10 109616769 109618498 CAGAACCTGTACTTTAACTGCAG 60 109618539 109618557 CTTCCTGGAGGTTGATGCA 60 NA Rattus norvegicus 81 LOC100911166 ENSRNOG00000010528 ENSRNOT00000014129 2 1 1 80 3 112521920 112521938 CATGTTTGCCAAGACAGCT 59 112521978 112522862 CATACATATTCCTTCTCCAGCTG 59 NA Rattus norvegicus 81 Snrnp48 ENSRNOG00000013756 ENSRNOT00000018508 1 1 1 80 17 27252395 27273478 GTGACTGTTATAGCCAAAGACTG 60 27252337 27252356 TGAGGTCACAAACAGATCGT 59 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 3 2 2 80 1 265788443 265788590 CAAAGAGATATACCATTGGCCG 59 265788384 265788402 AATACAGCTCCGTAGCACC 60 NA Rattus norvegicus 81 Cyp20a1 ENSRNOG00000017631 ENSRNOT00000023796 2 1 1 80 9 67169402 67169420 ACACAAGGAGGTAGACCAC 59 67169463 67172687 ACTTGCTGGCAATATCTGAG 58 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 3 1 1 80 19 26024166 26024187 GTGTAATTCTCACTTCTCGAGC 59 26024228 26024969 CGGAGTACAGGTCATCTCC 59 NA Rattus norvegicus 81 Zbtb40 ENSRNOG00000022039 ENSRNOT00000033670 3 1 1 80 5 155370254 155370274 CAGACCTATTGTGGAGTTCCT 59 155364596 155370213 CAGCAGATCTGAATCACCCT 60 NA Rattus norvegicus 81 Ccr6 ENSRNOG00000012964 ENSRNOT00000017302 1 1 1 81 1 53066184 53087229 CCGGAACATTATTGGAAACG 58 53066122 53066143 AACATAGAGTAATCTGAGCCAG 58 NA InUTR Rattus norvegicus 81 Otulin ENSRNOG00000012017 ENSRNOT00000016111 2 1 1 80 2 80271025 80273657 TAAGGAAGAAGTGGGTCAGC 60 80270964 80270982 CGTTTGTGAACAGCTCGTC 60 NA Rattus norvegicus 81 Prune ENSRNOG00000021120 ENSRNOT00000028677 2 1 1 80 2 196432379 196432397 TTCAACACTCACAACGAGC 59 196429421 196432337 GACTCCACAGATTGTCATTCG 59 NA Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 2 1 1 80 1 31415739 31415758 ACAATGTTTCTGACTGTCGA 58 31415801 31416619 AAGGCAACTGCATGTACTG 59 NA Rattus norvegicus 81 Cat ENSRNOG00000008364 ENSRNOT00000011230 1 1 1 80 3 93397730 93397748 ACAAACTCACCTGAAGGAC 57 93396475 93397689 AAGAAAGTAACCTGATGGAGAG 58 NA Rattus norvegicus 81 Clvs2 ENSRNOG00000012122 ENSRNOT00000016518 1 1 1 80 1 25174953 25216056 GGGATCAGAGCAGGTATACAC 60 25216096 25216116 GCTCTGGATCTTCAATCATGG 59 NA Rattus norvegicus 81 Rpp30 ENSRNOG00000018718 ENSRNOT00000025412 2 1 1 80 1 254697269 254697288 AGATTTGGATCTAAGAGCGG 57 254697331 254698634 ACTGAGTATCCCAGGTGAG 58 NA Rattus norvegicus 81 Akr1c12 ENSRNOG00000033010 ENSRNOT00000041925 3 1 1 80 17 69706778 69707285 GACACATGGGAGATGTTGG 58 69706716 69706735 CTGCTTGTGGTTAAAGTTGG 58 NA Rattus norvegicus 81 Gtf3a ENSRNOG00000050016 ENSRNOT00000073026 1 1 1 80 12 9858587 9859044 GAAGCCCATAAAGAGGAGGT 59 9858526 9858545 CTTCATGTGCTGCTTAAGGT 59 NA Rattus norvegicus 81 Gtf3a ENSRNOG00000050016 ENSRNOT00000073026 2 1 1 80 12 9858587 9859043 AAGCCCATAAAGAGGAGGT 58 9858525 9858544 TCTTCATGTGCTGCTTAAGG 58 NA Rattus norvegicus 81 Sepn1 ENSRNOG00000017078 ENSRNOT00000022921 2 1 1 80 5 152758708 152762131 AACTGACAGGGTCAGTTCC 59 152758646 152758666 CTATGGTAAGAGTCTCCTCGC 60 NA Rattus norvegicus 81 Olr566 ENSRNOG00000045792 ENSRNOT00000074642 1 1 1 60 3 76000216 76000238 GCTACAGTTACCTATTTGAGACC 59 76000258 76000276 AGAGCAGTTTGTCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr566 ENSRNOG00000045792 ENSRNOT00000074642 3 1 1 60 3 76000297 76000317 ACTCCTATGTTCAATCCACTG 58 76000338 76000357 TAAGAGCTGAAATCACCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esrp2 ENSRNOG00000023177 ENSRNOT00000026873 2 1 1 81 19 38118209 38118227 GAATTCCATGTGCAGCACC 60 38117844 38118166 TTTCTAGTCCCAAGTCCTGTG 60 NA Rattus norvegicus 81 Prdm12 ENSRNOG00000009218 ENSRNOT00000012234 3 1 1 84 3 10193010 10194384 TGTGGGAGGTATTCAACGAG 60 10192945 10192964 ATGTAGGTCATCCAGCTTCG 60 NA Rattus norvegicus 81 Tssc1 ENSRNOG00000009285 ENSRNOT00000060185 3 1 1 80 6 48127591 48127609 ACACCACAACTGTACCCAG 60 48127654 48130661 TATATCTGGCTCATGCTCCG 59 NA Rattus norvegicus 81 LOC100362226 ENSRNOG00000024412 ENSRNOT00000032589 2 1 1 64 3 2405561 2405580 TTGAAGAGGATGCAGAAGTC 58 2405607 2405625 ACCTGTGATAGCAGAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oxtr ENSRNOG00000005806 ENSRNOT00000007724 1 1 1 93 4 144415230 144415248 TACTGGCCTTCATCGTGTG 60 144403614 144415173 ATGAAGGCAGAAGCTTCCT 59 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 2 1 1 80 11 70037692 70037713 TAGCAACAGTTATCTGTTCAGC 59 70037752 70039395 GGCGCTTAGTACCATAATCCT 60 NA Rattus norvegicus 81 Endog ENSRNOG00000016033 ENSRNOT00000021531 1 1 1 60 3 8743455 8743473 CGTTTATGTCTGCACAGGG 59 8744118 8744136 ATAGGACTTCCCATCAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018,ENSRNOT00000084317 1 2 2 80 1 48703308 48703329 GTATTCCAAGCAGATCACTGTC 59 48703367 48705247 ATATTGGCACCTTTGATGTCTC 59 NA Rattus norvegicus 81 Vwce ENSRNOG00000060269 ENSRNOT00000079679 2 1 1 80 1 226701354 226701373 TGTTATCCGAGCTGAAGGAG 59 226701414 226703437 GAAACATTTCCAGCCAGACAG 60 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 3 1 1 83 8 115163470 115163488 CCCAAAGGAGCCACTATCC 60 115163535 115163733 CTGGACAGAGAAACCCTGG 60 NA Rattus norvegicus 81 Rad18 ENSRNOG00000005907 ENSRNOT00000066468 2 1 1 80 4 144596537 144600113 TTGCATCCTAAATCAGCTGC 59 144596476 144596494 TTTACTTGCTTCAAGGCGC 60 NA Rattus norvegicus 81 Rgs22 ENSRNOG00000025551 ENSRNOT00000039378 1 1 1 80 7 74798171 74798190 ACGGATGAAAGACATAGCAG 58 74795672 74798128 TTACTCTCCACAGGCTTCC 59 NA Rattus norvegicus 81 Drosha ENSRNOG00000013451 ENSRNOT00000048026 2 1 1 80 2 62973342 62973364 GGACGCTTACTCTTTAATGATCC 59 62978507 62979915 TGGCTCTTGTAGTTGGAGTG 60 NA Rattus norvegicus 81 Krt82 ENSRNOG00000033403 ENSRNOT00000029461 1 1 1 80 7 143200538 143201070 CCTTGAAGAAGGATGTGGAC 58 143200477 143200497 CAATCTCATGTTCTAGAGCCT 57 NA Rattus norvegicus 81 Cyp26c1 ENSRNOG00000030698 ENSRNOT00000030962 2 1 1 83 1 256374115 256375816 CAAGAGCTGAAGGAGTTGG 58 256375863 256375881 CAGCAGGATAAGGGATGTG 58 NA Rattus norvegicus 81 RGD1564419 ENSRNOG00000050564 ENSRNOT00000075254 2 1 1 136 4 82301548 82301566 ACCTTGGGCTGCTTTAGAG 60 82303928 82303946 TCTAGGACTGGAACTCGGA 59 NA DesignNoJunction Rattus norvegicus 81 AC130035.1 ENSRNOG00000042235 ENSRNOT00000067227 2 1 1 83 5 172882843 172883058 ACAGAAATAGTTGGCACTCAG 58 172883103 172883121 TTTCCCAGGGAACATGAGG 59 NA Rattus norvegicus 81 Mfng ENSRNOG00000008133 ENSRNOT00000011079 2 1 1 88 7 119996529 119996547 GAGTCAAGACTACCTGGGC 60 119990751 119996478 GATGAATGTCTGTTGCCTGG 59 NA Rattus norvegicus 81 AABR07061136.1 ENSRNOG00000033938 ENSRNOT00000052417 2 1 1 60 4 106361801 106361819 AAGATGACCCAGTCTCCCT 60 106361841 106361861 AACTGATGGTGACTCTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f6 ENSRNOG00000009459 ENSRNOT00000012558 3 1 1 81 6 27098003 27098625 AGTGAAGTAATCACAGGTGAC 58 27097942 27097961 CAAACTTCTCCTCTAGCACC 58 NA Rattus norvegicus 81 Ap2s1 ENSRNOG00000015865 ENSRNOT00000021310 2 1 1 80 1 78676249 78676267 AGTTGATCGAGGAAGTGCA 59 78676310 78681277 TCTTGAAGTTCCGGAACTCC 60 NA Rattus norvegicus 81 LOC684179 ENSRNOG00000047148 ENSRNOT00000073158 1 1 1 81 1 167826877 167827059 CCAATGTTGTTCCTCACTCC 59 167827103 167827121 TAGAGACTGCTAGGCATGG 58 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071,ENSRNOT00000006963 3 2 2 80 3 44444443 44444466 CTTATAAGAGGGTCGATATTTGGG 59 44434540 44444405 CCACTATACCATTGCTCACC 58 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973,ENSRNOT00000081825 3 2 2 80 5 48330508 48341077 TCGGGACAAATTTCCATGC 59 48341120 48341139 GCCTCAGATTCACTGTAGCT 60 NA Rattus norvegicus 81 MAST1 ENSRNOG00000003469 ENSRNOT00000004646 1 1 1 80 19 26051643 26052172 CGGGTCACTTAGGTAGCAG 60 26051581 26051601 AAGAAGCAAACGAGAAATGGG 60 NA Rattus norvegicus 81 MAST1 ENSRNOG00000003469 ENSRNOT00000004646 3 1 1 80 19 26035868 26037933 TGGAGTATGTGGAAGGTGG 59 26035806 26035826 AATACATTCGAGCCATCTCCA 59 NA Rattus norvegicus 81 Kif26b ENSRNOG00000028624 ENSRNOT00000017784 2 1 1 80 13 96778958 96778976 GTGGCTGATGAAAGAGCTG 59 96776119 96778916 TCCAAGTCAAATTCACGAAGC 60 NA Rattus norvegicus 81 Epb42 ENSRNOG00000011649 ENSRNOT00000015556 3 1 1 80 3 112977944 112978779 GACTTCGGTCAGTTTGAGAG 58 112977883 112977901 GCTCCAGTCTTTCACTTGC 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 3 2 2 80 18 63388241 63388260 GGAATGGAGATCTGTTCTGG 58 63384948 63388199 TTTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 2 2 3 80 13 76501477 76528059 TGAAATTTGGCTCGAAGTGTG 60 76501417 76501435 TTCAAGCCATCAGATGCCA 60 NA Rattus norvegicus 81 RGD1562029 ENSRNOG00000022723 ENSRNOT00000037555 3 1 1 80 9 66384287 66384305 CAGATGGTGACAACGTCTG 59 66384349 66401215 CTCCAGTGTTTGCTTGTCC 59 NA Rattus norvegicus 81 Foxk1 ENSRNOG00000001104 ENSRNOT00000001466 3 1 1 82 12 14190942 14190960 CACTAAGTGGCATCTACGC 58 14189348 14190896 TCGGATAGAGTTCTGCCAG 59 NA Rattus norvegicus 81 Cuedc2 ENSRNOG00000019574 ENSRNOT00000026609 2 1 1 82 1 266079152 266079307 AGGAACAAAGAGACCCTGAG 59 266079089 266079107 TCATCTTGGGTGTTCCCAG 59 NA Rattus norvegicus 81 Rn60_12_0203.4 ENSRNOG00000058453 ENSRNOT00000089017 3 1 1 60 12 18254309 18254331 CTCCTGTCACCATATCTAATCCT 59 18254271 18254292 GTTTCTAAAGAGGTAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 1 2 2 80 15 58655664 58656848 ATAGAGCAAGCTATGGATCTGG 60 58656888 58656907 GATCTGCTCCTTCAGAACCT 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968,ENSRNOT00000085929 3 2 2 80 5 163206358 163208679 TCCAGATCCAGGTAATGCAG 59 163206297 163206317 TCTGAAGTACTGATGTCAGGG 59 NA Rattus norvegicus 81 Lurap1l ENSRNOG00000033740 ENSRNOT00000041374 3 1 1 82 5 98469442 98514393 AGGAGATGGTGAACCTCAG 58 98514439 98514457 CTTGATGGACTCGATGCTC 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305,ENSRNOT00000084906 3 2 2 80 12 2148423 2150039 TTACGACTTGAGGAGGTGTG 60 2150081 2150100 GAAGTCTTGTACCAGCTGGA 60 NA Rattus norvegicus 81 Otud4 ENSRNOG00000018477 ENSRNOT00000024924 1 1 1 80 19 31935671 31938175 TTGAAGCGTTTATAGAAGGGTC 59 31928651 31928669 TCTCCACTTGTCCTACCCA 60 NA Rattus norvegicus 81 Rn60_7_1414.2 ENSRNOG00000059186 ENSRNOT00000088489 2 1 1 83 7 143583119 143583137 CTCCAGACACATGGAAGGG 60 143583183 143583202 CATGTGGATCAAACCTTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calhm2 ENSRNOG00000020325 ENSRNOT00000027526 2 1 1 80 1 266909268 266911259 ATGAGTCCCAGCTCTTTGG 59 266909206 266909226 AGTAATGCTTGAAGCACTTGG 59 NA Rattus norvegicus 81 Epsti1 ENSRNOG00000009471 ENSRNOT00000012632 1 1 1 80 15 60152076 60161460 TCAAGATGGAAACTTCCAGTC 58 60163514 60163533 TTCCTTCTGTGGAGAATCCT 58 NA Rattus norvegicus 81 Rn60_13_0836.2 ENSRNOG00000051207 ENSRNOT00000076646 3 1 1 60 13 78674381 78674400 TGTAGACATCAAGGGAATGG 57 78674422 78674441 CCGTGGTTAACACTTATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 1 2 2 80 X 68777423 68778025 GACCATGCAGGAAACTTCG 59 68778067 68778087 TGTTGATCTCCAGTGACTCTG 60 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 1 2 2 86 10 46314837 46327720 ATCAAATGCATGGACAAGGAC 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 Cxcl9 ENSRNOG00000022242 ENSRNOT00000003082 1 1 1 80 14 17230091 17232363 AACTGAAATCATCGCTACACTG 59 17232403 17232422 TTCATCAGCTTCTTCACCCT 59 NA Rattus norvegicus 81 Slc25a34 ENSRNOG00000021526 ENSRNOT00000022820 3 1 1 126 5 160179552 160179571 TTTCTACTGCTACAGCCTGG 60 160178187 160179463 TGTCTTGACCAGGTAAGCA 59 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 3 1 1 88 14 86690146 86694863 GTACCTCACAGCTGAGGTG 60 86690076 86690094 CAAGCTGTAAGTGACGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 1 1 5 82 1 100201190 100201208 TCGGCGAATACCTATGTGG 59 100201254 100202185 CTGGTAATTGTCGGTTGCG 60 NA Rattus norvegicus 81 Tnfrsf4 ENSRNOG00000020106 ENSRNOT00000027251 2 1 1 80 5 173448848 173448867 CTGAGGATACTGTCTGCCAG 60 173448909 173449317 GAACACAGTCAACTCCAAGC 60 NA Rattus norvegicus 81 Tnfrsf4 ENSRNOG00000020106 ENSRNOT00000027251 3 1 1 80 5 173448209 173448227 GCCTGGCTTCTACAATGAG 58 173448271 173448827 AGTTCACTTCCACTTCGGT 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 2 2 2 83 7 116959378 116959529 CCATCATCCTCTCAGTGGG 59 116959313 116959331 CAGAGAAGTCCATGGCCTC 60 NA Rattus norvegicus 81 Slc25a5 ENSRNOG00000039980 ENSRNOT00000015085 2 1 1 80 X 123406817 123406836 GCTGGCCTAACTTCTTATCC 58 123406877 123407233 CATGATATCAGTTCCTTTGCG 58 NA Rattus norvegicus 81 RGD1561582 ENSRNOG00000021528 ENSRNOT00000036556 2 1 1 81 8 116320781 116320937 AATCTGATTCCTCAGGGCA 58 116320978 116321000 CTCATACTTCATAGAGGATCACG 58 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 2 2 2 80 19 38601996 38602015 CTTCAAACTGGAGCAAGGAG 59 38602058 38607146 CTGGTCTTCCAGTCTGGAC 59 NA Rattus norvegicus 81 Dynlt1 ENSRNOG00000018207 ENSRNOT00000024656 3 1 1 82 1 47208268 47211468 TAAAGGAGGCTATAGAAAGTGC 58 47208207 47208228 TTCTACAACATTAGTGGTCCAC 58 NA Rattus norvegicus 81 RGD1564541 ENSRNOG00000012564 ENSRNOT00000016993 3 1 1 80 X 123465960 123465979 GTAGTGAAATTTGGCCAAGG 57 123465033 123465921 GGTCATCATAACCTTCTTAGGAG 58 NA Rattus norvegicus 81 Bhlhe40 ENSRNOG00000007152 ENSRNOT00000009563 3 1 1 80 4 140704573 140704591 AGACGTGACCGGATTAACG 60 140704630 140705557 GTGACCCAAAGTAGTAAGTTTGAG 60 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163,ENSRNOT00000078020 1 2 2 80 3 3388435 3390692 CTGAGTGTCTTGGGAAAGG 58 3388373 3388391 ACACTTTCTGCTGCTTCTG 58 NA Rattus norvegicus 81 Lrfn2 ENSRNOG00000011803 ENSRNOT00000015705 3 1 1 95 9 13847048 13875746 AGGTACTGATTTACAGGATGATCC 60 13846976 13846994 TAGCCAGTACGCACAAGTC 60 NA Rattus norvegicus 81 LOC688754 ENSRNOG00000015161 ENSRNOT00000020399 2 1 1 81 18 51613656 51613674 TGTGGACTTTGACATCGCT 60 51613591 51613609 ATTCATCTGGTAGCCAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Ddx25 ENSRNOG00000012260 ENSRNOT00000017307 1 1 1 80 8 36760003 36760021 TAGGAGTACCACAGTCCCA 59 36759211 36759708 GCCAAATCCACTACATCGTC 59 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000061795 ENSRNOT00000084410 1 1 1 80 1 220010466 220010484 CCTTTGTACACATGGAGCG 59 220010526 220015531 TTCGTTTGCCTTGAAACTCTG 60 NA Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 1 1 1 77 10 110699716 110699734 AAGCAGAACAGAGTCTCCA 58 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 2 1 1 78 10 110699717 110699735 CAAGCAGAACAGAGTCTCC 58 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr772 ENSRNOG00000048092 ENSRNOT00000040364 1 1 1 60 3 102926226 102926247 GCCCTGTATCTTCATCTATGTG 59 102926267 102926286 AGCAAGAAATTTGTCGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wsb2 ENSRNOG00000001135 ENSRNOT00000001499 1 1 1 80 12 44944292 44944312 GTTACAGCTTCGTATGACACC 59 44943743 44944251 CTGAGTGTGATGAAGTGACC 58 NA Rattus norvegicus 81 Dnajb9 ENSRNOG00000004006 ENSRNOT00000005363 3 1 1 86 6 64168229 64168248 TTAGCCATGAAGTACCACCC 60 64167431 64168183 GAGTGTTTCATATGCTTCTGCA 59 NA Rattus norvegicus 81 Vom1r29 ENSRNOG00000048033 ENSRNOT00000075596 1 1 1 60 1 68222027 68222045 GAGGGTTCAACACATCCAC 59 68222069 68222087 GGCTTGAGATTCTGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802,ENSRNOT00000041346 3 2 4 80 17 72226717 72226740 AGTCTGTTATCTCCTACAAGACAG 60 72226777 72227839 AAATGCTCATGTTCTCAGCAG 59 NA Rattus norvegicus 81 Cfap53 ENSRNOG00000014585 ENSRNOT00000019573 3 1 1 80 18 70273752 70273771 CACTCTCGTGAAAGCAAGAG 59 70273812 70274413 TCACGTAGCTTATTTCGTCTC 58 NA Rattus norvegicus 81 Kctd6 ENSRNOG00000007817 ENSRNOT00000010303 1 1 1 80 15 18485948 18487953 AGACTGGAGCTATATGATGACTG 59 18485890 18485910 GTCAACGTGGTAAGAGATGTC 59 NA Rattus norvegicus 81 Slc22a20 ENSRNOG00000022673 ENSRNOT00000065532 3 1 1 80 1 221342397 221342415 TACTGCATCTTCCGGTTCC 60 221340796 221342355 CATCCATTCTACAACCAGGGA 60 NA Rattus norvegicus 81 Plxnc1 ENSRNOG00000007970 ENSRNOT00000011178 2 1 1 80 7 35967450 35967469 GTTCTACAAGCTCGTTCCTC 58 35963455 35967409 ACTTGAATTCTTCTCACCTCC 58 NA Rattus norvegicus 81 AABR07030970.1 ENSRNOG00000049635 ENSRNOT00000041082 1 1 1 80 10 111279302 111280479 TGCCAATGATACACCAACAG 59 111279241 111279262 CACTTGGTTTGTTCTAAGTTGG 58 NA Rattus norvegicus 81 Tmem206 ENSRNOG00000003915 ENSRNOT00000005387 2 1 1 80 13 110030449 110031469 GAAAGTCCAGGATATAATCACGG 59 110031506 110031527 GCTTTAAATAATGCCAGGAACG 59 NA Rattus norvegicus 81 Gemin2 ENSRNOG00000004360 ENSRNOT00000006137 1 1 1 80 6 80116552 80118440 TCCAGAATTGGGAAGATGGT 59 80118483 80118501 CGAATCAGTGAGTGAGCCT 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719,ENSRNOT00000052333 1 3 3 80 4 33639426 33639444 TTTGCAGAGGAAATCGGTG 59 33639487 33640445 CATTGCCTCCTTGATTTGGT 59 NA Rattus norvegicus 81 Rn60_X_0745.2 ENSRNOG00000051072 ENSRNOT00000075871 2 1 1 85 X 73639708 73639727 TCAGGAACAAAGACATTGCT 58 73639595 73639661 GCTGATTCTCCTCATCACTG 58 NA Rattus norvegicus 81 Vsx1 ENSRNOG00000042220 ENSRNOT00000061469 3 1 1 85 3 146487403 146488390 GGATACAGGTCTGGTTCCA 58 146487336 146487354 GTACTCAGCCATCACACTG 58 NA Rattus norvegicus 81 Gpr31 ENSRNOG00000039255 ENSRNOT00000060121 2 1 1 60 1 53520621 53520639 CGTCTACCTGTTCAACCTG 58 53520579 53520598 TAAGAATGGCAGACTGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957,ENSRNOT00000064266 2 2 2 80 5 172302488 172302998 CAGGCATACAAGGCTTACC 58 172303041 172303060 AGCATAGGTCAGGTTCAGTC 59 NA Rattus norvegicus 81 Mrpl49 ENSRNOG00000020975 ENSRNOT00000028475 1 1 1 80 1 221417474 221417586 TGACATCTGGGCTCTACAG 59 221417412 221417431 TCATTAACCTGGGTGACAGG 60 NA Rattus norvegicus 81 AABR07049579.2 ENSRNOG00000050523 ENSRNOT00000072754 3 1 1 60 5 129381232 129381252 GCAGTCCAGTTCTGTATAGTC 58 129381274 129381292 CTAGGTAGTGCCACTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361879 ENSRNOG00000045749 ENSRNOT00000071297 2 1 1 62 14 83220297 83220315 CTACATCCGGTTCTCCCAG 59 83220341 83220359 TTGAACTCGGTCTTCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d5 ENSRNOG00000008390 ENSRNOT00000061916 1 1 1 80 8 5454538 5454557 AGTCTATGCTAGCTCTGCTG 59 5454598 5456381 GATACTTTGATTGCTCCAGGT 58 NA Rattus norvegicus 81 Immp1l ENSRNOG00000004829 ENSRNOT00000006406 3 1 1 80 3 96002544 96023071 CTTTAAGAGCCGTAACTATGTACC 59 96023106 96023128 CATCTGGAATCGGTAGAATTCTC 59 NA Rattus norvegicus 81 LOC103690997 ENSRNOG00000060271 ENSRNOT00000078636 3 1 1 60 1 60332219 60332237 CCCTTCTCCAAGAAGCTCC 60 60332177 60332198 GCAAACAAGAATCAAGATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl20 ENSRNOG00000018647 ENSRNOT00000025213 1 1 1 84 5 173250810 173252431 TAGTTAAGTGCCAGGTGGA 58 173252477 173252497 GCAGCCAAAGATTTAAACGTC 59 NA Rattus norvegicus 81 Cep126 ENSRNOG00000021839 ENSRNOT00000029887 3 1 1 85 8 6261512 6261530 ACTATCTGTGCCCTCTCAG 58 6258710 6261466 GCTTCTTGTACATAGTACAGCC 59 NA Rattus norvegicus 81 Gabrd ENSRNOG00000016385 ENSRNOT00000022246 1 1 1 80 5 172798483 172798503 CCACTTCAATGCTGACTACAG 59 172798149 172798441 TTCCTCACGTCCATCTCTG 59 NA Rattus norvegicus 81 Tnfrsf18 ENSRNOG00000022012 ENSRNOT00000038747 2 1 1 82 5 173461685 173461703 ACTGTGAAGACCCTCAGTG 59 173461744 173462297 CTTAATATTCCCTTGAGACTCCAC 59 NA Rattus norvegicus 81 Nomo1 ENSRNOG00000021118 ENSRNOT00000028680 1 1 1 80 1 102030522 102031375 TGAAGGAGGCAAGTACCAC 59 102031416 102031437 CATTATAGCCAGCCACTATGAG 59 NA Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 3 2 2 80 Y 152647 153828 GGCTAAAGCTATGATGAACCA 58 153866 153888 CTCAACATGTAGCTCAGTAAGTC 59 NA Rattus norvegicus 81 Rn60_5_1514.1 ENSRNOG00000030173 ENSRNOT00000043325 2 1 1 78 5 147637323 147637341 TCAGAACCAGAGCGATGTC 60 147637380 147637401 GATTAAACCATTTGCAATCCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912289 ENSRNOG00000026440 ENSRNOT00000036657 3 1 1 60 1 201901485 201901504 GGACAGTTCTTCATCAGACC 58 201901526 201901545 TGTCATCTTCAGAGCAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr200 ENSRNOG00000048852 ENSRNOT00000048075 2 1 1 60 1 170147895 170147914 CTGTCAACAGGTTCTACCAG 58 170147935 170147955 AGAATCATGTCACTTCCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst2 ENSRNOG00000027171 ENSRNOT00000035100 2 1 1 80 15 3757084 3757102 TTCTCGTGAACTGGATCGA 59 3757144 3757291 GTCATAAAGACACTGATCGGA 58 NA Rattus norvegicus 81 Ndst2 ENSRNOG00000027171 ENSRNOT00000035100 3 1 1 80 15 3759529 3759548 GCCTCAATGGAGATCATCCA 60 3759591 3759774 ATCTGCATCGAACCTGAGG 60 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 2 2 2 80 16 21069202 21069221 TGCATTGATGAGGTGAATGG 59 21069264 21069694 TCCTTCTGTGTCCTTCTCG 59 NA Rattus norvegicus 81 Gatm ENSRNOG00000000168 ENSRNOT00000000181 2 1 1 80 3 114726693 114726715 ACCCTTTAGAGGAAGTGATAGTG 59 114720955 114726654 ATGTATTGGCCTTCACCTCC 60 NA Rattus norvegicus 81 LOC100912429 ENSRNOG00000046920 ENSRNOT00000075184 2 1 1 80 15 19278212 19281264 TCAAAGTGAAGCAGGAACG 58 19278150 19278169 GCTCCTGTTCTGATAACTCC 58 NA Rattus norvegicus 81 Olr429 ENSRNOG00000025721 ENSRNOT00000036382 1 1 1 60 3 21292346 21292367 TGGTATTACAGACAGTTTCCTC 58 21292388 21292406 GCAGATAGCAACATAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041140.1 ENSRNOG00000006459 ENSRNOT00000050793 1 1 1 110 X 120314470 120314488 AAAGACATTGTGGCTGAGG 58 120314562 120314583 GCACCTGTATTTCTTGATTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ndufs1 ENSRNOG00000011849 ENSRNOT00000015852 2 1 1 80 9 69947895 69948512 CCTAAAGGATATGTTCGATCAACTG 60 69947839 69947857 CACCATGACAGACTGACCA 59 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 3 2 2 80 10 13864736 13864848 GGCTACTGCTGGATAGTGG 60 13864891 13864910 TAAATTGGTGCACGATGTCC 59 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386,ENSRNOT00000021306 3 2 2 83 4 179685082 179693136 GCCAGTTTGTATCAAGTTCTC 57 179685019 179685037 AGGAGTTAACAAGCCTCAC 57 NA Rattus norvegicus 81 Eif3j ENSRNOG00000016459 ENSRNOT00000022437 2 1 1 103 3 113976921 113976939 CGTTCTCTATGGAGGACCC 59 113977005 113989404 CCAGTTATCCTTCACGTCCT 59 NA Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 1 1 1 80 10 46791431 46798899 CTTACAGAGGAATATCCAACCC 58 46798938 46798958 CTTCCGAGTTAAGAAAGGGTG 59 NA Rattus norvegicus 81 Sprr1a ENSRNOG00000024028 ENSRNOT00000012174 3 1 1 167 2 192669912 192671041 CTGAGTATTAGAACCAAGTACTACC 58 192669769 192669788 CTCAGGAATAGGGTGACAGG 59 NA InUTR Rattus norvegicus 81 Traf3ip3 ENSRNOG00000005565 ENSRNOT00000007649 3 1 1 80 13 111914331 111914350 AACAGGCCAAGTGTCTATCC 60 111911852 111914288 ATCCCTGTTTCCTGCTGTC 60 NA Rattus norvegicus 81 RT1-S2 ENSRNOG00000029001 ENSRNOT00000042882 2 1 1 82 20 3156681 3156878 GAGGAGAAACACAGGTGGA 59 3157047 3157065 CCAGAGACAAGTCAGACCG 60 NA Rattus norvegicus 81 Tmx4 ENSRNOG00000024852 ENSRNOT00000034567 3 1 1 86 3 127545265 127561969 ATTCAAGAACCAGGTTTGAGTG 59 127544496 127544514 GTAACGGCGGAATATCCCA 60 NA Rattus norvegicus 81 Chpf ENSRNOG00000020038 ENSRNOT00000027165 3 1 1 98 9 82671922 82671940 AATGACATCGTCAGTGCTC 58 82671356 82671860 GTAGTGCATTCCCTCATGG 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 3 3 3 94 10 13321421 13323537 TTCATTAAGGGCATCCAGCT 60 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 1 2 2 80 8 52813071 52813095 GAGAAGGATCAGATTATTGAGATGG 59 52808684 52813034 AATCAGGTTGGGACCTTCAG 60 NA Rattus norvegicus 81 Stoml3 ENSRNOG00000011006 ENSRNOT00000014765 2 1 1 80 2 142717440 142726433 AGAACAATTTAGTGGGCACC 59 142726475 142726494 GCATCAACAGGAAGGAAAGG 59 NA Rattus norvegicus 81 Slc7a10 ENSRNOG00000010938 ENSRNOT00000015205 2 1 1 80 1 91445422 91446120 CCCTCGAAAGAACCTACCT 58 91446162 91446182 TAGGCAACATTGGTGAATGTG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 3 2 2 80 4 77278668 77278686 CACCAGCAGTTACTTGGTG 59 77278727 77279676 AATGCATTTCTTGATCACTGGG 60 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 1 3 3 80 1 247245654 247245674 AGCTTTATAAGGCTGTTGGAC 58 247245712 247248487 CTGGTAGTATAAGGTTGTTCCTG 58 NA Rattus norvegicus 81 Ifne ENSRNOG00000024204 ENSRNOT00000029976 2 1 1 60 5 107233438 107233457 ACCAAGAGGGACATGTACTG 59 107233479 107233498 AAGAGAACGAAGATCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr2 ENSRNOG00000004959 ENSRNOT00000006607 3 1 1 80 14 104348640 104351215 GTTGAGTCATACACTCTTCCAG 59 104348581 104348601 CTGAAATAAAGCTTCTGGTGC 58 NA Rattus norvegicus 81 Olr140 ENSRNOG00000049204 ENSRNOT00000050606 1 1 1 60 1 169209209 169209228 CCTCACTCTTACCACACTCC 60 169209249 169209269 GATTTCCCGAATGTTGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd4 ENSRNOG00000050996 ENSRNOT00000075786 1 1 1 60 15 58016649 58016670 ATTACTTCATTGACAGGGATGG 58 58016688 58016709 CCATTTCGTAGGAAGTTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc45a1 ENSRNOG00000018229 ENSRNOT00000024581 2 1 1 83 5 167672524 167673674 GTAAGAAGTTTGCAGGGTCC 59 167672460 167672478 GAAAGTACTGGCAGCTGAG 58 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 3 2 2 80 15 109347345 109347363 AATGCCACCGTAATGAAGC 59 109345774 109347303 GGCTAAGTTACCTGTGTTGTC 59 NA Rattus norvegicus 81 Mex3c ENSRNOG00000015777 ENSRNOT00000041227 1 1 1 61 18 69550125 69550143 CATGTCGCTGAGATTGTCG 59 69568755 69568773 TTTGTCTTGGCTCTCAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ankrd24 ENSRNOG00000006759 ENSRNOT00000008882 2 1 1 82 7 10922236 10922254 TAGTGGCTTCCCTACAGGA 59 10922072 10922190 CTCCTCAAGGATCTGGACC 59 NA Rattus norvegicus 81 Olr1179 ENSRNOG00000033150 ENSRNOT00000050101 1 1 1 60 8 20728939 20728957 GAACCTGCTCATCATCCTG 58 20728976 20728999 GAAGTACATAGGATTATGGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 1 2 2 80 12 19630137 19630158 CTACTTCATAGCCCTTCTTCTC 58 19630197 19630430 TCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572,ENSRNOT00000085310,ENSRNOT00000085479 2 3 3 80 10 5223408 5226998 AAGCTAGAGTTTGCATTGGG 59 5223347 5223365 GGAAGAGAATGCTGGAAGG 58 NA Rattus norvegicus 81 AABR07055834.1 ENSRNOG00000021900 ENSRNOT00000042386 1 1 1 80 7 10773858 10773876 TGGATCCTTCCCAGAAGAG 58 10772989 10773818 CGGATGTTATACCTATAGCAGTG 59 NA Rattus norvegicus 81 RT1-M1-1-ps ENSRNOG00000061923 ENSRNOT00000088528 1 1 1 80 20 2436563 2436823 CCCTGAATGAGAAATGAGATCC 59 2436504 2436524 CATGATAACCTGGAGAAGGTC 58 NA Rattus norvegicus 81 RGD1559441 ENSRNOG00000024953 ENSRNOT00000042810 2 1 1 80 5 24892926 24892944 AGATGCCTTGGATGATCGG 60 24892988 24894897 TCCTTGTCTGACCAACCTC 59 NA Rattus norvegicus 81 Lrriq1 ENSRNOG00000004564 ENSRNOT00000071306 2 1 1 80 7 45175772 45175790 CAAGCGTGTATCTGTTCCT 58 45172690 45175729 CTCAAATCAGCCTCATCTGG 59 NA Rattus norvegicus 81 Ccng2 ENSRNOG00000002089 ENSRNOT00000002876 1 1 1 80 14 16270344 16270364 CAACAGCTACTACAGTGTTCC 59 16268938 16270302 CCAGAGTCCTCACTCTCAC 59 NA Rattus norvegicus 81 Dok2 ENSRNOG00000013922 ENSRNOT00000018725 3 1 1 85 15 52451368 52452359 GACCTTTGGCAAGAAGTGG 59 52452407 52452426 CATCCTGGAGCTCTAGTCTG 59 NA Rattus norvegicus 81 Dnajc11 ENSRNOG00000008802 ENSRNOT00000011960 1 1 1 80 5 169124816 169127056 CTTATGAAGTGCTTAGCGACC 59 169127098 169127116 CCCATCCTTCCATCTCCAG 59 NA Rattus norvegicus 81 Iqcc ENSRNOG00000048553 ENSRNOT00000074345 1 1 1 80 5 147820342 147820455 ATTAACAGTCGGAAGGAGTACC 60 147820283 147820303 AGTAGGCTTGTCTCTGATCTG 59 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006,ENSRNOT00000061279 2 2 2 85 7 10999297 11001595 CCTCACTCAGGAGCATCAG 60 10999230 10999249 CCAAGAGGTTGTTCAGTTCC 59 NA Rattus norvegicus 81 Pycr1 ENSRNOG00000036682 ENSRNOT00000054949 1 1 1 120 10 109820084 109820102 GAAGATGGCAAGCTTGTGG 60 109819874 109820000 CTGTGAAAGCATAGGCAGG 59 NA Rattus norvegicus 81 Galnt16 ENSRNOG00000004589 ENSRNOT00000006460 1 1 1 80 6 104243925 104243945 ACCTCCACCTTAATGTCTTCC 60 104243987 104248027 TCTCCATTTCTGCTTGCCT 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 1 2 2 118 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Eif2b2 ENSRNOG00000006467 ENSRNOT00000008730 2 1 1 80 6 109045552 109046293 TGCTAGTGGAACTGGAAGG 59 109046337 109046355 TCATGATCACCTCGTTGGA 58 NA Rattus norvegicus 81 LOC100912365 ENSRNOG00000004066 ENSRNOT00000005407 2 1 1 60 13 104283498 104283517 AACTTTGTCCATCAGAGGAG 57 104283457 104283475 CTTCCCACTTCTCTTCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem238 ENSRNOG00000017306 ENSRNOT00000023246 2 1 1 66 1 72624905 72624923 GGACCTGCTCATCTACTCC 59 72624953 72624971 GTACCAGAGAATCCAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000071569 1 1 2 151 12 24652982 24653000 TGCTTGGCCTCTAACTACG 60 24653114 24655204 ATGCTCTTCTCCAGTCTCTG 59 NA Rattus norvegicus 81 AC142182.1 ENSRNOG00000028417 ENSRNOT00000038833 3 1 1 238 10 86282021 86282039 GTAACTTCCTCACGGAGCA 59 86281795 86281813 CTCGGAGCTGTTGTAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Patl2 ENSRNOG00000017061 ENSRNOT00000022964 2 1 1 80 3 114067547 114069126 TGGTACTTCAGAATCAGTTTGG 58 114067488 114067506 AAGAATCCAGGGACACCAG 59 NA Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 3 1 1 80 1 53433956 53436110 GCATTACGCCTTTCAGACC 59 53436154 53436172 GAAAGCCTGGTGAAGAGGT 60 NA Rattus norvegicus 81 Nup54 ENSRNOG00000002247 ENSRNOT00000003070 1 1 1 80 14 17139325 17139606 CCACTCAGTTCAAAGGTCG 59 17139649 17139668 CTTCAGATTTCACAGCTCCA 58 NA Rattus norvegicus 81 Olr517 ENSRNOG00000032434 ENSRNOT00000046947 2 1 1 60 3 74058785 74058804 CCTTTCTTTCTGTGCATCCA 59 74058826 74058845 CAGCAATGGAGGAATGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scfd1 ENSRNOG00000031203 ENSRNOT00000040548 2 1 1 80 6 72130289 72130310 GCGGATGTTGAATTTCAATGTG 60 72130345 72132560 AATCTGTCATAGATGAGTACCTTCC 60 NA Rattus norvegicus 81 Vil1 ENSRNOG00000015408 ENSRNOT00000021432 3 1 1 80 9 81699642 81699663 GAAACAAACTCCTGTGATGTCC 60 81699704 81699842 GGACATTTCCACCTCTCCA 59 NA Rattus norvegicus 81 Narf ENSRNOG00000036664 ENSRNOT00000054920 1 1 1 80 10 110460153 110460173 TGATCATGAAGCTCAAGAAGG 58 110460214 110461929 TGCCATTTAAGCATCCTCTG 58 NA Rattus norvegicus 81 Zbtb48 ENSRNOG00000009595 ENSRNOT00000012745 1 1 1 80 5 169194826 169194846 AAGTGTTACTTTCGCAAGGAG 59 169194168 169194785 GCATGTGAAGACCTGTTCTG 59 NA Rattus norvegicus 81 Olr654 ENSRNOG00000047650 ENSRNOT00000042667 3 1 1 60 3 77169793 77169813 CTATAATGAGTGCATGACCCA 58 77169753 77169771 GAAGATTTCCACACCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000050827 2 1 2 91 4 32541759 32541777 CTCTGACACAAGCACACTG 59 32541830 32558607 CTGCTGCATATGTTATCTCGT 58 NA Rattus norvegicus 81 Htr3a ENSRNOG00000006595 ENSRNOT00000008965 1 1 1 80 8 53217273 53218993 TCAATGAGTTTGTGGACGTG 59 53217212 53217231 TGTAGTTCTGGACTTCACCT 58 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837,ENSRNOT00000090984 1 2 2 80 7 123095892 123100493 ATTCAGGAGAAGGATAGAGATGG 59 123095834 123095852 TTTGCGCTCATAGAACAGG 58 NA Rattus norvegicus 81 LOC102553939 ENSRNOG00000045837 ENSRNOT00000041664 3 1 1 80 19 321603 321625 ACTTAGAGATGGAGAACACTGAG 59 321663 322316 TGAGCAGGTTTCTAGAGAAGG 59 NA Rattus norvegicus 81 LOC100363509 ENSRNOG00000006924 ENSRNOT00000009061 1 1 1 60 5 137371979 137371997 CTGTACAGAGGCGTTCTCC 60 137371937 137371955 GATGCTAAAGATGCTGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363509 ENSRNOG00000006924 ENSRNOT00000009061 2 1 1 60 5 137372071 137372089 TCTGTGGGCATTACCTTGG 60 137372029 137372047 GGTACAGTAGCAAACCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak2 ENSRNOG00000000122 ENSRNOT00000000134 1 1 1 81 5 147195230 147195248 TTTGGAGACTCCTTCCTGC 59 147195292 147195404 GTCATCAAGCATTTCAGCCT 59 NA Rattus norvegicus 81 Defb19 ENSRNOG00000036898 ENSRNOT00000055409 1 1 1 119 3 148035216 148042474 GTTTCCAGTCTACAGGTGC 58 148042557 148042575 GCAATACAGCAGTAGTCCC 58 NA Rattus norvegicus 81 LOC361108 ENSRNOG00000009738 ENSRNOT00000012906 1 1 1 80 16 6440630 6444249 GATTGGGAAATCCACAACAG 57 6444291 6444310 GTCATCATCGTCATCATCGT 58 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 3 1 2 117 15 24327811 24332207 CTTCTAACTGGCATCTGTTATGC 60 24332283 24332302 TTTCATGCAGTTAGCTCTGC 59 NA InUTR Rattus norvegicus 81 RGD1566073 ENSRNOG00000028320 ENSRNOT00000034681 2 1 1 131 19 30588246 30588796 AGTGAGTGTACAAGCAGAGG 60 30588134 30588152 ATCTTCTTCCCGAGCTTGG 60 NA Rattus norvegicus 81 Ereg ENSRNOG00000002771 ENSRNOT00000003716 2 1 1 81 14 18578902 18578920 CATTGACCGTGATTCTCGT 58 18577900 18578858 CGATTTCTGTACCATCTGCA 58 NA Rattus norvegicus 81 Lrrc4c ENSRNOG00000029798 ENSRNOT00000044595 1 1 1 91 3 86792843 86817259 CCCTAATGGAGAACAAGACTG 58 86817312 86817330 CTGCTGTGGATGTAAGGTC 58 NA InUTR Rattus norvegicus 81 F9 ENSRNOG00000003430 ENSRNOT00000004559 1 1 1 80 X 143118632 143118653 GATAATTTGTTCCTGCACTGAG 58 143118694 143122136 CCACATGGGAATGGAACTG 59 NA Rattus norvegicus 81 Slc9a3 ENSRNOG00000015159 ENSRNOT00000020711 1 1 1 80 1 31748873 31748893 GAAGTCCATGTCAATGAAGTC 57 31746509 31748831 GTACAAGACCACAGTCACC 58 NA Rattus norvegicus 81 Ptchd2 ENSRNOG00000026447 ENSRNOT00000036647 1 1 1 80 5 165073170 165081773 TCTACTAGCAAAGTCCAGGTC 59 165073110 165073130 CATGTCGTTATTGAAGGTCCG 60 NA Rattus norvegicus 81 Rtp4 ENSRNOG00000028895 ENSRNOT00000043660 2 1 1 80 11 80643747 80643768 AAGAACATTGTACCAGATGGTG 59 80640442 80643706 TCTGGAACACTGGAACCTG 59 NA Rattus norvegicus 81 Celf5 ENSRNOG00000004695 ENSRNOT00000061219 1 1 1 80 7 11116368 11116388 CTTCGGCAATATCATCTCCTC 59 11116430 11116825 TCAAAGCTCACGAATCCGA 59 NA Rattus norvegicus 81 Utp14a ENSRNOG00000005012 ENSRNOT00000048022 2 1 1 80 X 135112675 135112695 ACCTCCTGACTACAAGAACTC 59 135112734 135113502 TCTTCACTTCATCATCCAACTC 58 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 2 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837426 3837448 TCTTCCCTATGTTCTCTACAGGA 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 3 2 2 80 3 3838275 3838293 CAACCTCCTACCACCACAG 60 3838337 3838479 TTTCTCGAACCTGTCGAGG 60 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 2 2 2 93 1 204761787 204761805 GAAGATCGGTGTGAAACGG 59 204718389 204761731 GAAGGTCTGACAGTTCTGTG 58 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 1 2 2 80 13 102843850 102845016 GAACCATCCTAACATAGTGAAACTG 60 102843794 102843813 CCACTTGCGTATTCCATGAC 59 NA Rattus norvegicus 81 Camk1 ENSRNOG00000021781 ENSRNOT00000029728 1 1 1 80 4 145294774 145295768 TTACACAAGATCAAGCACCC 58 145294713 145294732 CTGCATGATGAGGTAGAGGT 59 NA Rattus norvegicus 81 Tmem262 ENSRNOG00000047431 ENSRNOT00000073942 3 1 1 82 1 221444337 221444459 CTTTGACCATCCTGATCCTC 58 221444503 221444522 CTCCTCTCGGTAATTGATGG 58 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 1 1 1 80 1 165272032 165272669 CAGAACTTCAGGAGAATGGTC 59 165272711 165272729 AATCAAACATCCACCACCC 58 NA Rattus norvegicus 81 Olr856 ENSRNOG00000057199 ENSRNOT00000084932 2 1 1 60 5 137725484 137725503 CTATAACATTGCCACAGCCT 58 137725443 137725464 CACATCCTTGTTCCTTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp3 ENSRNOG00000007356 ENSRNOT00000010253 2 1 1 80 4 99489422 99492372 AAAGAGATGATGAAGGCTGGA 59 99492411 99492432 TTCCATTTCCTCTTGATCATCC 58 NA Rattus norvegicus 81 Ppid-ps1 ENSRNOG00000055834 ENSRNOT00000089469 2 1 1 60 20 2443537 2443556 AAGAAGGCACAGGAGATAGC 60 2443496 2443515 TGACTTTAAGCAGTTCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mei1 ENSRNOG00000007003 ENSRNOT00000009428 2 1 1 80 7 123310684 123314889 CAGACCTCTGTATTGAAGTCCT 59 123314929 123314948 ACTCATTCAGTAGGCACTGG 60 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 3 2 2 85 1 73251864 73251887 GGATGTTATCAGTGTCAGTATAGG 58 73234283 73251820 TCATACAAGCCTGTCACCA 59 NA Rattus norvegicus 81 Efcab5 ENSRNOG00000022536 ENSRNOT00000031618 2 1 1 80 10 63056255 63056273 ACTCTAGATGATGCTCCGT 58 63056314 63057133 TTCATCCACTACTGTAAAGCTG 58 NA Rattus norvegicus 81 LOC100910887 ENSRNOG00000050926 ENSRNOT00000072979 1 1 1 60 13 9480121 9480140 ATCATTCTGTTGACTCTGCT 57 9480160 9480181 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox5b ENSRNOG00000016660 ENSRNOT00000022487 2 1 1 80 9 43260356 43260374 CTACTGATGAGGAGCAGGC 60 43260415 43260598 GCATATTGTATGGATCCAGTCC 59 NA Rattus norvegicus 81 Olr162 ENSRNOG00000047589 ENSRNOT00000075826 3 1 1 60 1 169683497 169683517 CAGCCTATGTACCATTTCCTG 59 169683536 169683557 TAGTAGTTGCCAGACCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 3 1 1 76 6 123034538 123034556 TCCAGAGAAGAGGATGAGG 58 123034596 123042390 TAACTGACTCCTCGACTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zdhhc7 ENSRNOG00000017342 ENSRNOT00000023405 3 1 1 80 19 52734757 52735258 AATGACGAAACTGAGATCGAG 58 52734697 52734715 AGACTTCATCCCTTCCCAC 59 NA Rattus norvegicus 81 Hs6st2 ENSRNOG00000030880 ENSRNOT00000040165 2 1 1 80 X 138714263 138714282 TCAAACTTCAACTCAGGTGC 59 138678483 138714223 ATAATGGAAGTTCTTCCCACTC 58 NA Rattus norvegicus 81 Rab33a ENSRNOG00000006698 ENSRNOT00000008868 1 1 1 80 X 135349203 135359633 AAGATCAAGGTTCAGGTGTG 58 135359675 135359694 CACATTGCGGTAATAATGCT 57 NA Rattus norvegicus 81 Hif3a ENSRNOG00000017198 ENSRNOT00000023490 1 1 1 80 1 78989749 78990021 GAGCATCCACACTTTGCTG 60 78989687 78989705 CACAGATAGCCTCCAGTCC 59 NA Rattus norvegicus 81 Tmx1 ENSRNOG00000057934 ENSRNOT00000087540 3 1 1 86 6 92869782 92869800 TCATGGTTTGGTCCAAGCT 60 92871194 92871297 ATAGCTGTGGCTAGTCCTG 59 NA Rattus norvegicus 81 Pcyt1a ENSRNOG00000001762 ENSRNOT00000002403 3 1 1 84 11 71552843 71552861 GAAGTGGGAGGAGAAGTCC 59 71551509 71552795 TTTCAGCATGTGCTTCAGC 60 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944,ENSRNOT00000083419 1 2 2 80 8 53735425 53736626 GGACTCAACAATACAGACCA 57 53736667 53736687 GTAGAATGAGACAATGGAGGA 57 NA Rattus norvegicus 81 Cxcl1 ENSRNOG00000002802 ENSRNOT00000003778 3 1 1 80 14 18745000 18745137 CAAACCGAAGTCATAGCCAC 59 18744939 18744959 GACAATCTTCTGAACCATGGG 59 NA Rattus norvegicus 81 Ap5m1 ENSRNOG00000014148 ENSRNOT00000018972 1 1 1 80 15 25947678 25947789 GGATTATTGGCCAGAAGTTCC 59 25947830 25947849 TGTTATGGCCCTGAACTCTG 60 NA Rattus norvegicus 81 Olr1501 ENSRNOG00000031966 ENSRNOT00000041085 1 1 1 60 10 60728353 60728372 ACTTGTCCTTCAATGACCTC 58 60728395 60728413 ATGTTCAGCAGCAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562987 ENSRNOG00000018676 ENSRNOT00000025198 2 1 1 108 18 70982163 70982184 TTCCTGGAGCCATACATATACC 59 70982253 70982736 TATCTGCACCCTTGCAGTC 60 NA Rattus norvegicus 81 Gpr101 ENSRNOG00000027658 ENSRNOT00000033219 3 1 1 111 X 140301792 140303541 CAGCAACAGATAGTGTGCA 58 140301699 140301717 TTGAGTACTGTTGGTGCAG 58 NA InUTR Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 1 1 1 64 15 27965962 27968275 CATCCCACTTCTGTGAGCA 60 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ckm ENSRNOG00000016837 ENSRNOT00000022895 1 1 1 80 1 80329243 80329262 ATCTCCATGGAGAAAGGAGG 59 80329302 80329999 GAAGATCTCCTCAATCTTCTGC 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 1 2 2 80 1 143687401 143687419 TGATCTGCTACTGGGATGG 59 143687462 143689811 TGTAACTTTCCTCCCATGCT 59 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000067781 3 1 2 116 15 2741194 2741968 TGAACCACAAGGGATGGAC 60 2742048 2742066 AGCAATCGCTGTAGTGAGG 60 NA InUTR Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423,ENSRNOT00000080686 1 2 2 188 5 171459137 171459155 GAGTACTTCGTGTTCCGAC 58 171458898 171458920 GAAGTCATATTTGCAGATGAGC 58 NA Rattus norvegicus 81 Bora ENSRNOG00000024798 ENSRNOT00000039344 2 1 1 80 15 83457570 83457588 CATCGGCTATCTGTTCACC 58 83457631 83460104 TAAACTTCCTGTGCTCTGAC 58 NA Rattus norvegicus 81 Cd48 ENSRNOG00000004737 ENSRNOT00000006306 3 1 1 81 13 90131448 90134240 CCATGGAAGTATACGATCTTGTG 59 90134281 90134299 CTCAGGTGACAGGAGTCAG 59 NA Rattus norvegicus 81 Olr819 ENSRNOG00000005469 ENSRNOT00000007235 3 1 1 84 4 72637897 72637916 TATACAGCCTGAGGAATGCT 58 72637962 72638132 ATGCACCATATCAATTGGGA 57 NA Rattus norvegicus 81 Acsm4 ENSRNOG00000014726 ENSRNOT00000034610 1 1 1 80 1 189448299 189448319 TCATATCCTATCACGACCCTG 59 189448356 189450670 GAATTGATACCTCTTAAGGTCCTG 59 NA Rattus norvegicus 81 RGD1560212 ENSRNOG00000057774 ENSRNOT00000082419 1 1 1 127 18 76728631 76730305 GTCTTAAAGCAAACGGTGCT 60 76730395 76730413 ATGTTCATCAGGTCGTCCG 60 NA InUTR Rattus norvegicus 81 Hsdl1 ENSRNOG00000015576 ENSRNOT00000020859 1 1 1 80 19 52216100 52216118 ATCGTCACAGTGTCTTCCG 60 52215896 52216056 GTCCAGATAGGCCTTGGAC 60 NA Rattus norvegicus 81 Olr609 ENSRNOG00000050679 ENSRNOT00000051968 1 1 1 60 3 76288857 76288876 GCCCAAACATAATCAACCAC 58 76288816 76288837 GAACAGGACAAAGAAAGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr609 ENSRNOG00000050679 ENSRNOT00000051968 3 1 1 60 3 76288606 76288628 GGGATCATACTCCTTCTCTACTG 59 76288568 76288587 CTTTGACCACAAGCCATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909831 ENSRNOG00000059263 ENSRNOT00000046197 2 1 1 60 3 74749809 74749829 CCTGATCATCCTTACAATGGT 58 74749769 74749789 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000056996 1 1 2 80 4 55010448 55011283 GATGACATCAGGAGGATATTGG 58 55010389 55010408 CCAACTATCAGAGCCAATCC 58 NA Rattus norvegicus 81 Vom1r99 ENSRNOG00000053093 ENSRNOT00000085001 1 1 1 60 4 121969356 121969377 CACACTGATTCTCACATAAGGG 59 121969317 121969335 TGACTGAGATTCCAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim55 ENSRNOG00000012723 ENSRNOT00000017125 2 1 1 80 2 104439192 104440412 TTCTAGAGAAGAGGAAGATGAAGAC 60 104440446 104440468 TCTTCTACTTCTACTGCATCCTC 59 NA Rattus norvegicus 81 Zfr2 ENSRNOG00000020416 ENSRNOT00000061132 2 1 1 80 7 11342115 11342135 GAATGCAGCTTCAATGATAGG 58 11341449 11342074 AACTTTCTTCCTGTACTGCA 57 NA Rattus norvegicus 81 Lyrm1 ENSRNOG00000024530 ENSRNOT00000033673 1 1 1 80 1 189683244 189683266 CAGTGTATAGACGAATGTACAGC 59 189683306 189684961 GGGTAGATGGATCGGTCTG 59 NA Rattus norvegicus 81 Klhdc4 ENSRNOG00000046599 ENSRNOT00000065472 3 1 1 61 19 54652215 54652236 AAGATGGAGAAGAAAGTGTCCA 60 54652025 54652043 GTAAACGAGGAGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 Wsb1 ENSRNOG00000012929 ENSRNOT00000017949 3 1 1 81 10 66597356 66602863 CAACGAGAAAGAGATCGTGAG 59 66597295 66597313 ACCACCACATTTCTTGTCG 58 NA Rattus norvegicus 81 Ifitm1 ENSRNOG00000004273 ENSRNOT00000005645 3 1 1 82 1 213766958 213766976 GTCCCTGTTCAATACGCTC 58 213767022 213767530 TCCTGTCCCTAGACTTCAC 58 NA Rattus norvegicus 81 Slk ENSRNOG00000011339 ENSRNOT00000015495 1 1 1 80 1 267409169 267409189 AAGGAGTTAGATGAGGAGCAC 59 267409230 267412471 TTCCTCCAGTGTCTTCTTCC 59 NA Rattus norvegicus 81 Htr2a ENSRNOG00000010063 ENSRNOT00000013408 3 1 1 100 15 56669373 56731589 ATCTGTAGGTATATCCATGCCA 58 56731650 56731668 GAACAAAGTTGTCATCGGC 58 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 3 2 3 80 1 79077669 79077687 ACACCCTACGAACTCTGAG 59 79077731 79078833 TTGAGGAAAGGGAGGTGTC 59 NA Rattus norvegicus 81 Tlr11 ENSRNOG00000032368 ENSRNOT00000039925 3 1 1 88 15 27178023 27179263 TGCTCAAAGAATCAATGCCA 59 27179312 27179332 GTTAAGGCTCACCAAAGTCAG 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312,ENSRNOT00000090540 2 2 2 81 2 84528505 84528523 GTGGCTACACAGAAGACTG 58 84526369 84528463 CATATTGTTTGTGGCTACACTG 58 NA Rattus norvegicus 81 Cxxc1 ENSRNOG00000014614 ENSRNOT00000020472 2 1 1 80 18 70196608 70196750 ATGCTAAGTATGAGAGCCAGAC 60 70196919 70196937 CATCACAGAAGAGTCGGGT 59 NA Rattus norvegicus 81 Inpp5d ENSRNOG00000017020 ENSRNOT00000051338 2 1 1 80 9 94826066 94826084 AGCATGAGAACCGGATCAG 60 94826128 94828382 CAGCTCCTTTGTTTCCCAG 59 NA Rattus norvegicus 81 Senp17 ENSRNOG00000050153 ENSRNOT00000049542 1 1 1 60 4 160803429 160803447 GGACCAGAACCATCAAGGA 59 160803387 160803405 TTCCAGGCTTCTGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 1 1 2 60 15 28018086 28034119 AGGCACTTTCTAGGTGACG 59 28034142 28034161 CAACAAGAGCAGAAGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Psmc1 ENSRNOG00000003951 ENSRNOT00000005329 3 1 1 81 6 124133263 124135311 GACATCAAGGCAATCTGCA 59 124135353 124135374 TCTTGAAGTCTTCGTTTGTCAC 59 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027062 2 1 3 116 1 100600605 100600623 CAATGACTTGGGTGTCCTG 59 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr636 ENSRNOG00000051516 ENSRNOT00000085537 1 1 1 60 3 76843097 76843117 TGGACATTTGCTATACCTCCT 59 76843138 76843157 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc141 ENSRNOG00000012580 ENSRNOT00000037015 2 1 1 80 3 63912917 63914456 TAAGGAAGGTGGAAATGTCAG 58 63912857 63912877 ATTCAGAAGGACTAGAACCGA 58 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 2 1 1 114 8 40071215 40071234 GCTTCTATAACAACCACGCA 59 40067255 40069304 GTAGACTCCTCGAAGGGAG 58 NA Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 2 1 1 60 1 67917880 67917899 CAATCAGCCCTAATCACTCC 58 67917918 67917940 CCAATGTACTTGATGACTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1593 ENSRNOG00000003521 ENSRNOT00000004674 2 1 1 60 13 92225284 92225304 ATTCGCTTGGAAATTCAGAGG 59 92225323 92225344 GCAATGTATCTGTCAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Peli2 ENSRNOG00000012363 ENSRNOT00000016629 1 1 1 91 15 25075943 25077623 ATATTCCTCGGCGAGAAGG 59 25077678 25077696 CTTGGGTGCATTACCAGGA 60 NA Rattus norvegicus 81 Diexf ENSRNOG00000004789 ENSRNOT00000006395 3 1 1 80 13 111848921 111849443 CTTCTACGACAGGGTTTCCA 60 111847949 111847970 TCAGAATGTGAAGAATCTGAGC 59 NA Rattus norvegicus 81 Olr414 ENSRNOG00000033799 ENSRNOT00000052047 2 1 1 60 3 20882797 20882817 TTCTCACTAACATAGTTGCCC 58 20882757 20882775 ACACAGAAGGACAGTCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629,ENSRNOT00000068177,ENSRNOT00000041994,ENSRNOT00000067886 1 4 4 80 16 23752836 23758926 ATTATCCCAGGAGGAACAGC 59 23758969 23758987 TATGAGCGATGTTCAGCCA 59 NA Rattus norvegicus 81 Lrsam1 ENSRNOG00000022312 ENSRNOT00000060186 2 1 1 80 3 11974957 11974975 GGCCTGCAACATGAAATCC 60 11974390 11974914 CTTGGGTGGTTTCAACTCTG 59 NA Rattus norvegicus 81 Hacd1 ENSRNOG00000043192 ENSRNOT00000063911 1 1 1 80 17 81187413 81187603 CTTTGCTTGAGGTAGTCCAC 59 81187276 81187294 TTCGTGAACTCACTTGGAC 58 NA Rattus norvegicus 81 Smpdl3a ENSRNOG00000000815 ENSRNOT00000001081 3 1 1 81 20 40797213 40797600 AAGGAGAAGGTATACGTCATAGC 60 40797641 40797659 AGTACTGCCTCATTGCTGG 60 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 3 1 1 296 7 140452884 140453010 TCGGGCTCTAAGCAATGAG 60 140450790 140450808 ATGGAGAAGGAGAACGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl42 ENSRNOG00000042740 ENSRNOT00000066322 1 1 1 80 7 36588051 36588069 CATTGACGTCTGATGGCAG 59 36583691 36588007 GAGGGATAGGTTGGGTGTG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000089788,ENSRNOT00000078538 3 5 6 60 20 3306111 3306129 CCTCTGTAAGACTGTGCCT 59 3306153 3306171 CATGGCCACTAGGTCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab4b ENSRNOG00000001500 ENSRNOT00000002052 1 1 1 80 1 83984980 83984998 CAAGAAGGACCTGGATCCT 58 83983449 83984937 AGGAACATCAGCTCATTCTC 57 NA Rattus norvegicus 81 Cass4 ENSRNOG00000021560 ENSRNOT00000035245 3 1 1 120 3 170432964 170432982 AAGAGAAGCTGAGTCCCAC 59 170433066 170434386 GTTAGGTGACTTCTGCCCA 59 NA Rattus norvegicus 81 Pqlc1 ENSRNOG00000059215 ENSRNOT00000089389 1 1 1 80 18 76770332 76776396 TACGGATACTCTTCTGGTTTGG 60 76776434 76776455 GTAGCATCGTAAGGATCATGAC 59 NA Rattus norvegicus 81 Arl8b ENSRNOG00000055860 ENSRNOT00000080663 3 1 1 80 4 140870971 140870992 TGAAGATATGATACCCACCGTG 60 140871028 140872081 CCTATGTCCCAGATCTTTATTGTG 59 NA Rattus norvegicus 81 Dcp2 ENSRNOG00000045895 ENSRNOT00000073952 1 1 1 80 18 35645967 35645986 ACATCATTCCAGGAGTTCCA 59 35646026 35646141 TGGAGAACCACTCAATATTCCT 59 NA Rattus norvegicus 81 Olr386 ENSRNOG00000056884 ENSRNOT00000084162 2 1 1 60 1 64492046 64492065 GTTTGCCTGGATGTTGTCTC 60 64492088 64492106 GCAGAAGAAGTGGTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rufy2 ENSRNOG00000000390 ENSRNOT00000037409 3 1 1 80 20 27237601 27238196 AAACAGACAACTCAACAGCA 58 27237540 27237560 TCGATCAGCTTAGTGTTTGAC 59 NA Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 2 1 1 94 2 243106071 243106090 AATCTAGGACAACAAGCCAC 58 243106147 243106508 CAACTCAAGTACCTCTGCG 58 NA Rattus norvegicus 81 LOC100360002 ENSRNOG00000042869 ENSRNOT00000064931 3 1 1 60 10 89187370 89187391 CAACTCTTATACCCTCACAGGT 59 89187331 89187349 AGCAATGCCTCCATATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clstn1 ENSRNOG00000016398 ENSRNOT00000045063 2 1 1 80 5 166596163 166596182 GTCTGTACACCTGCAAAGAG 59 166596225 166596438 TGGAGCTTGTTTGGATCTG 58 NA Rattus norvegicus 81 RGD1304884 ENSRNOG00000017431 ENSRNOT00000023478 2 1 1 80 19 53729955 53729974 GAACATGAAAGGCTTCTTCG 58 53730017 53730869 TTGTTCTCATCCTCCTCGT 58 NA Rattus norvegicus 81 Zscan21 ENSRNOG00000039234 ENSRNOT00000001810 3 1 1 83 12 19268714 19269439 GACTGCAGGTCTCATCTCC 60 19269485 19269504 TGCTTAAGGACTCCATTGCA 60 NA Rattus norvegicus 81 Ssuh2 ENSRNOG00000005734 ENSRNOT00000007591 1 1 1 80 4 144314142 144314421 TTTCAGCCTGTAACCAACCA 60 144314081 144314100 CACCTGGACCTTCATATCCC 60 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 2 2 2 80 18 77291672 77291690 CACTATGAGACGGAAGGCA 59 77275847 77291630 CAAGTAACCATGTAGCTGCAC 60 NA Rattus norvegicus 81 Dcbld1 ENSRNOG00000000407 ENSRNOT00000000462 2 1 1 80 20 33386134 33386154 GCGATTTGAACATTGAGTCCA 60 33386192 33420008 AATAGGGACCATACTGATCTGTC 59 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 2 2 2 81 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352850 68352868 TGTCATGGTGAGTGTCCTG 59 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000058492 1 1 2 80 12 36313965 36313984 GTGAACTCTTCGTCTCTGAG 58 36269514 36313923 AAACTTCTGTGTCCATGGTG 58 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549,ENSRNOT00000014733 2 2 2 80 4 147788499 147788666 ATTACGTGGTGGTAGGCTG 60 147788708 147788728 CCTTGTAAAGTCCGTGAACTG 59 NA Rattus norvegicus 81 Fam109b ENSRNOG00000042522 ENSRNOT00000066149 1 1 1 255 7 123574150 123574168 CTTTGCAGATCCAGAGGCT 60 123576333 123576351 ACACTCCTCTTGTTCAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hsf2 ENSRNOG00000000808 ENSRNOT00000001059 2 1 1 80 20 38945368 38945535 GCTAAATATGTATGGCTTCCG 57 38945577 38945595 AATTCAACAGGGCCATCTC 58 NA Rattus norvegicus 81 Prkcq ENSRNOG00000019057 ENSRNOT00000025901 1 1 1 80 17 71024713 71029232 TCAAGTGTGATGCATGTGG 59 71024651 71024672 GCTTCTGGTTTATACCACAGAG 59 NA Rattus norvegicus 81 Mesdc2 ENSRNOG00000012366 ENSRNOT00000055583 2 1 1 80 1 146041052 146041780 CTATGATGTTCAGAGGTTCATCG 59 146041820 146041838 TTGATCTCCCAGGCATAGC 59 NA Rattus norvegicus 81 Ttyh2 ENSRNOG00000024578 ENSRNOT00000004081 3 1 1 80 10 103237188 103237209 TTCTGCTAAACAACTCTGAGAC 59 103237250 103238417 CCAAGTAGTCCTTGTGCAG 58 NA Rattus norvegicus 81 Stk4 ENSRNOG00000013529 ENSRNOT00000066657 1 1 1 80 3 160493257 160493276 GGATTTCGTGAAGCAGTGTC 60 160493319 160494358 TTAACAAACGGGTGCTGGA 60 NA Rattus norvegicus 81 Cndp2 ENSRNOG00000015591 ENSRNOT00000021400 1 1 1 80 18 81525720 81525740 CCACATTGACTTCGATATGGA 58 81524830 81525678 AGGATGTCTTTCTTGCAGC 58 NA Rattus norvegicus 81 Olr550 ENSRNOG00000048383 ENSRNOT00000051768 3 1 1 60 3 74997217 74997238 CCTCTAATTTACAGCCTGAGGA 59 74997178 74997198 TACAAATTGACCTCTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 3 1 1 80 14 23589475 23589495 CTGGGAAATATGATCCTGAGG 58 23584206 23589435 TCTTGGCATTTCTATCTCCTG 58 NA Rattus norvegicus 81 Celsr3 ENSRNOG00000053889 ENSRNOT00000084220 3 1 1 80 8 117627108 117627126 TTTCCTCCCAGTTCCTTCG 59 117627170 117627436 CACAGTTGCAAACGAGAGG 60 NA Rattus norvegicus 81 Tkt ENSRNOG00000016064 ENSRNOT00000021862 2 1 1 80 16 6628173 6629107 GGATCACAGGGATTGAAGAC 58 6629148 6629168 TCTCCTGGATAATCTGCTCAG 59 NA Rattus norvegicus 81 Emc8 ENSRNOG00000017654 ENSRNOT00000023855 2 1 1 80 19 54238987 54245487 CGCTCACCCTAATTGACTC 58 54238925 54238944 CCTTCACACGTTCATTAGCT 58 NA Rattus norvegicus 81 Tcerg1l ENSRNOG00000016737 ENSRNOT00000031734 3 1 1 80 1 210588466 210588485 CTGAAAGCAGTGATGGATCC 59 210570464 210588424 AGCTTTCAGTCCTGTTCCTC 60 NA Rattus norvegicus 81 Polq ENSRNOG00000002471 ENSRNOT00000063995 3 1 1 80 11 66615429 66616876 GCAGTCTGAAATGAGTCCT 57 66615367 66615386 TGAAGGTACTCCATCCTCTC 58 NA Rattus norvegicus 81 Ubald1 ENSRNOG00000027368 ENSRNOT00000033695 1 1 1 81 10 11341495 11341998 ACCAGATGATGTGCACTCC 60 11342043 11342061 TTGAGACGGGAGAACATGG 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000087323,ENSRNOT00000036483,ENSRNOT00000084058 1 4 4 80 13 79746455 79746474 ACAACTGACCAACATGACAC 59 79745507 79746412 TGACGATCTGAAACCTCCC 59 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 1 1 1 80 13 93691110 93692401 GGAAGATCAGATCGTGTCC 57 93692444 93692463 GGAATTGCAGACTTCTTTCC 57 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049,ENSRNOT00000046229 3 2 3 81 9 81628656 81628675 AGCTACCTCATCATCGACAC 59 81628719 81629738 CAATAGAAGCCTGCACAGC 59 NA Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 1 1 1 60 4 84862612 84870513 CAAGTCCTTCAGACCTTTGC 59 84870534 84870554 GTACTCTTCAAATGCGTCGTC 60 NA DesignRelaxed Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 2 1 1 80 15 3765454 3765552 AGAAGAAACATACAGGCATGG 58 3765394 3765413 TTCGGCTTAAGGTAGGAGAG 59 NA Rattus norvegicus 81 Bhlhe22 ENSRNOG00000021745 ENSRNOT00000033940 3 1 1 61 2 102686897 102686915 GTGTGCCCTATTCAACAGC 59 102686940 102686958 TTTAAGGCTTCTCCGTGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 2 2 2 80 3 13247869 13270128 ATCACAGTATCACAGGTATCCA 59 13247810 13247829 CTCCTCTTGAAATTTGCCGA 59 NA Rattus norvegicus 81 LOC681282 ENSRNOG00000034107 ENSRNOT00000041750 3 1 1 114 7 118024224 118024556 GAAACAGAAAGAGCAGGCTG 60 118024633 118024651 CATCTGAGCCCTGTAGTCC 59 NA Rattus norvegicus 81 Nfe2l3 ENSRNOG00000010886 ENSRNOT00000014826 3 1 1 80 4 81226141 81231337 GAGGCTAGGAATGAGAGCC 59 81231380 81231399 CTGTGATGAAAGGAGCTGGA 60 NA Rattus norvegicus 81 Tas2r107 ENSRNOG00000005646 ENSRNOT00000007453 2 1 1 60 4 165773544 165773564 TTGTATCCCTGATTACCTGCT 59 165773504 165773522 ATTTGCCTGATGTGTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.1 ENSRNOG00000039404 ENSRNOT00000060386 1 1 1 87 15 29810628 29810777 TCTTAGTGTTTGGAGGAAGCA 59 29810561 29810579 TTCACAGTCAGAGAAGCCC 59 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 1 2 2 100 5 58394293 58396482 AAGTTTCGAAACAAGGAGCC 59 58396545 58396563 ATCTCATCTTCGTTGGCCC 60 NA Rattus norvegicus 81 Cntn5 ENSRNOG00000007038 ENSRNOT00000009418 1 1 1 80 8 8422349 8524609 GGAGACTAATCCTGTGCCC 60 8286658 8286680 CATATGAAGTAGAAAGGCCAGAG 59 NA Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 3 1 1 83 5 144292857 144293089 GACAGAATGGGCTATAACATTGG 60 144293130 144293150 CCGAAAGTCATGACATCTTCC 59 NA Rattus norvegicus 81 Cd5l ENSRNOG00000023068 ENSRNOT00000057022 1 1 1 80 2 186691083 186691104 GCTCAATGTACGCTAAATTACG 58 186691145 186692597 ATTGTCTGGGTTCTCACAC 57 NA Rattus norvegicus 81 Gid8 ENSRNOG00000010180 ENSRNOT00000013609 3 1 1 80 3 176219833 176221045 TACTTAGTCACAGAGGGCT 57 176221089 176221107 TTCTAGGTCCACACTTGGT 58 NA Rattus norvegicus 81 Hbe1 ENSRNOG00000029286 ENSRNOT00000043719 2 1 1 81 1 169005143 169005161 AAAGAGCCTCATCAATGGC 58 169004962 169005098 CACAACGAGAAGTCTTCCC 58 NA Rattus norvegicus 81 Ambp ENSRNOG00000006889 ENSRNOT00000009248 2 1 1 80 5 78978284 78980433 GTCCACTTCATTTGCAAGAG 57 78978223 78978241 CCAGTTATGAGTGGCTCAC 58 NA Rattus norvegicus 81 Pex2 ENSRNOG00000008748 ENSRNOT00000011579 1 1 1 81 2 98265925 98267937 AAGGAAAGACAGCATCAGAG 58 98267980 98267999 CTGACTTATCCTCAGCACTC 58 NA InUTR Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292,ENSRNOT00000016340 2 2 2 80 11 69834617 69837669 GAACAATAGTAAGAGGGATGGG 58 69837709 69837728 GCAATGGATATGGTATCGGG 58 NA Rattus norvegicus 81 Nek2 ENSRNOG00000004487 ENSRNOT00000006235 3 1 1 80 13 110518050 110518069 TCAAGTTGAAGGAAAGGCAG 58 110518112 110520828 CACGTTCTTTCTGCTCCAG 59 NA Rattus norvegicus 81 Hck ENSRNOG00000009331 ENSRNOT00000012432 3 1 1 80 3 148610372 148610393 ACTTTCTCAAGAGTGAAGAAGG 58 148610434 148616219 CCATGCCCTCTGAAATCTG 58 NA Rattus norvegicus 81 LOC685438 ENSRNOG00000050981 ENSRNOT00000064787 2 1 1 80 12 21362115 21362134 TTCCTGAACAGAATCTGGCT 59 21361759 21362075 CTAATGAATTCCCAGTGTGCAG 60 NA Rattus norvegicus 81 Tyw1 ENSRNOG00000024352 ENSRNOT00000038092 3 1 1 80 12 29866227 29869546 GAAATCAGGAACCTCACACC 59 29866166 29866184 GTCGATCTTCTTCAGGCTG 58 NA Rattus norvegicus 81 Nol3 ENSRNOG00000015588 ENSRNOT00000020908 2 1 1 156 19 37235329 37235347 CAAACTGTGAGCATGCCAG 60 37235602 37235620 CTTCCTCTGAAGCTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tfb2m ENSRNOG00000002695 ENSRNOT00000003618 2 1 1 80 13 97837035 97837053 CTTAAAGCTGGTGCCAGAG 59 97834300 97836993 CGCATTCTTCCTTAAGGACTC 59 NA Rattus norvegicus 81 Fam105a ENSRNOG00000012109 ENSRNOT00000067638 2 1 1 80 2 80391257 80391276 CTCTTCTGTCAGCTACCCTC 59 80391113 80391217 GATAGCCAATCCACCATTTCAG 60 NA Rattus norvegicus 81 Pcdhga11 ENSRNOG00000027232 ENSRNOT00000026969 1 1 1 60 18 30905503 30905523 ACGGTTGAAGATGTGAATGAC 59 30905544 30905563 CTGAGTTGATGGAAGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Banp ENSRNOG00000019140 ENSRNOT00000025894 1 1 1 80 19 54802028 54803506 TCATTAGCAACGCTGTTCC 59 54803549 54803568 CTTCATTGTGACTGTCGTCC 59 NA Rattus norvegicus 81 Map3k19 ENSRNOG00000003952 ENSRNOT00000005244 2 1 1 83 13 44527141 44529672 CTATGGCACAGTATATTGTGGG 59 44527079 44527097 AGTTTGTCGGTCGAATCCA 59 NA Rattus norvegicus 81 Ns5atp4 ENSRNOG00000027533 ENSRNOT00000031887 1 1 1 60 3 35542370 35542389 GTACTTGCGTTATCAGGAGG 58 35542329 35542347 CCCAATTCGTGCTTTGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000054812,ENSRNOT00000065376,ENSRNOT00000082482 3 4 4 81 1 226772455 226773056 TTATCCAGCTCTGGAAGGG 59 226772392 226772411 CACTTGCAGGTCATAGTCAC 59 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062 1 1 5 60 9 81675983 81676001 CCTCATACGTCTTCCATCC 57 81676467 81676486 CTCATGTTGTCAAACCACGA 59 NA DesignNoJunction Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000086282,ENSRNOT00000080062,ENSRNOT00000090832 2 3 5 60 9 81675911 81675932 GAAACTACGTAAAGGACCTGAG 59 81675953 81675971 TCTAAGATTAGCACCCGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmf1 ENSRNOG00000019620 ENSRNOT00000035383 2 1 1 80 2 187757651 187771695 GGGCAAGAGCTATGAGAGG 60 187757589 187757607 TCATAGATCCACCGTGTCG 59 NA Rattus norvegicus 81 Tubal3 ENSRNOG00000028750 ENSRNOT00000036821 3 1 1 81 17 69982765 69982786 TTCTTTCATGAGACAAGCACTG 59 69977012 69982723 GGACGCCATCTATAACGGT 59 NA Rattus norvegicus 81 Mug2 ENSRNOG00000033245 ENSRNOT00000072465 2 1 1 80 4 154267796 154268648 GAAAGTTCACTCCCAGATCCT 60 154268688 154268708 TCTTCCTTGCTCTATGGTCTC 59 NA Rattus norvegicus 81 AABR07061345.3 ENSRNOG00000057968 ENSRNOT00000080096 3 1 1 60 4 117751056 117751077 TATGTGGCTAAATGTTTGCAGG 60 117751017 117751037 GTGCATTCAGGTAAGACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Card14 ENSRNOG00000047367 ENSRNOT00000070842 3 1 1 80 10 108466867 108467506 TCATGAATACGAGCACCCA 59 108467547 108467568 TGGGAAATATGTCCATCTTGTG 59 NA Rattus norvegicus 81 RGD1559682 ENSRNOG00000022492 ENSRNOT00000037377 1 1 1 60 15 81577256 81577275 CTTTCGTTCTCTGACCACTG 59 81577215 81577233 TCTGTGAAAGGAGGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231,ENSRNOT00000077701 2 2 2 80 19 55944828 55945481 GTGAGCTCAAGAATGCGTC 59 55945524 55945543 TGTAGTACTCAACCACCTGC 60 NA Rattus norvegicus 81 Tgm7 ENSRNOG00000037203 ENSRNOT00000056190 1 1 1 80 3 113055148 113055168 CTATGGCTTTGTTTACAAGGG 57 113053597 113055107 ACGATGTCCTCTTCAAACTG 58 NA Rattus norvegicus 81 Tgm7 ENSRNOG00000037203 ENSRNOT00000056190 2 1 1 80 3 113055146 113055167 TATGGCTTTGTTTACAAGGGTC 59 113053596 113055107 AACGATGTCCTCTTCAAACTG 59 NA Rattus norvegicus 81 AABR07040565.1 ENSRNOG00000037736 ENSRNOT00000050903 2 1 1 60 X 104336879 104336897 CTCACTAAAGGGCATCCTG 58 104336837 104336855 GTTGCTGTTGAAGTCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 2 2 2 90 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425222 159425241 TCATACCTAAGCACCGACTG 59 NA Rattus norvegicus 81 Eif4e3 ENSRNOG00000010301 ENSRNOT00000013719 1 1 1 87 4 132083994 132084012 ACAACATCCCTCCTGTGAC 59 132082545 132083943 CTCTCCTCTTCCCACAGTG 59 NA Rattus norvegicus 81 Tnfrsf13b ENSRNOG00000002304 ENSRNOT00000003139 3 1 1 84 10 47412628 47412646 AGAGAACCTGTGTCTCCTG 58 47412692 47414556 CTGCAGTTGATGAATTTGCAG 59 NA Rattus norvegicus 81 Znhit6 ENSRNOG00000030049 ENSRNOT00000041897 2 1 1 80 2 251460048 251460067 GTTTACTTGAGGCTGCTACC 59 251460108 251469962 AAACTGCTGATTCCTATGGTC 58 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 2 2 2 87 11 70570517 70570535 AAATGACGAAGAGCAGACG 58 70550960 70570468 CTCCTGCTTTACACTTATGGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000077336 1 1 4 80 9 81576566 81577700 CATGAACTACGGCCATGAC 59 81576504 81576522 TTCCGGTCATCCCATTCTC 59 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 1 1 1 80 1 266624986 266627517 GACTTGTACACCGACAACAG 59 266627560 266627578 CGTCTGCTTAAAGGCAGAG 59 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 3 1 1 80 1 266624925 266624946 AATTGTCACCTTGGAAGATGTG 59 266624986 266627517 CTGTTGTCGGTGTACAAGTC 59 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000088955 1 1 2 80 1 82171746 82171766 CTTCAGTCAAAGGCAAGGAG 59 82171809 82171827 CCAACACAGGGAGATCTGG 60 NA Rattus norvegicus 81 Mettl11b ENSRNOG00000025415 ENSRNOT00000076404 3 1 1 86 13 81990754 81990772 TTACCACTGCTACAGCCTG 59 81989940 81990704 GTCAGGTACCCTGATACCC 59 NA Rattus norvegicus 81 Calm1 ENSRNOG00000004060 ENSRNOT00000064679 2 1 1 84 6 124224161 124224183 GCTAACAGATGAAGAAGTAGACG 59 124224221 124224389 CTGTACGAATTCTTCATAGTTGACC 60 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 1 2 2 86 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078151 84078169 GAGAATGCCTTGTCCAGGT 60 NA Rattus norvegicus 81 Cant1 ENSRNOG00000003239 ENSRNOT00000066303 3 1 1 82 10 107434863 107434881 GTGTGGAACACGAGAACTG 59 107434246 107434817 ATGAATGAGGTAGCCTGGC 60 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081904 3 1 3 60 20 3344940 3344960 CCTTCACTCTTACGAAGTTCC 59 3344982 3345000 TCGGCAGAGAAATTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682,ENSRNOT00000057798 1 2 2 80 10 48335372 48335391 TGAAGAAGACCTCAACTTCC 57 48335433 48418276 TTGTTGGAATAGTCCCTGTG 58 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 2 2 2 80 3 113936774 113936793 ATAGGAAACCTGCTCTTCCT 58 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Serpina10 ENSRNOG00000050761 ENSRNOT00000073709 2 1 1 80 6 127501512 127501530 GGATCTTCTCCACCTCAGC 60 127500353 127501468 ACTGTTGTACGACCTTGGA 59 NA Rattus norvegicus 81 Col20a1 ENSRNOG00000010326 ENSRNOT00000040270 1 1 1 80 3 176515399 176515418 CACAGCTGGTTTCATCACAC 60 176515461 176515549 ATCTGGAGCTGGAATGTGG 60 NA Rattus norvegicus 81 Ankh ENSRNOG00000010960 ENSRNOT00000068484 2 1 1 87 2 80219265 80226176 ATAGCTCAGGTTGTGTTCG 58 80226227 80226245 TGTACAGAGACAGGATGGG 58 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000085560 2 1 3 62 1 37957287 37957310 CTGGAGAATTATAGCAACCTTGTG 60 37918596 37918615 GCAGGATGAAGATGGAAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Triap1 ENSRNOG00000047812 ENSRNOT00000075320 3 1 1 82 12 47031404 47031422 AGTTTCTCAAAGGAGACGG 57 47029933 47031359 CTTGATTGCTTTCTGGACAC 57 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 3 1 1 60 13 71305733 71305751 GATAGTGACGGGTTCCCTC 59 71305774 71305793 CACCATCCCATCATCAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Teddm1 ENSRNOG00000048614 ENSRNOT00000071815 3 1 1 60 13 71323193 71323213 CCACGTTAAAGACTCATCTGG 59 71323234 71323253 TACCACCAAGATGAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 1 2 4 65 13 80439269 80440888 AAAGGTGCTTGTGATCGGA 60 80439222 80439241 TGATAGCCCACGTCATAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 2 2 4 66 13 80439269 80440888 AAAGGTGCTTGTGATCGGA 60 80439221 80439241 CTGATAGCCCACGTCATAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Qser1 ENSRNOG00000037514 ENSRNOT00000056808 2 1 1 80 3 94715261 94715280 GTTACATGGAGTTGCTCGTC 59 94713475 94715219 AAAGAAGCTCATCGTTGCTC 59 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392 1 1 3 83 12 22473605 22473624 AATACGTGAGCCTGAACCT 59 22473539 22473557 AGAAACGATTCCAGAAGCG 58 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000075504 3 1 3 85 12 22473605 22473627 AGCAATACGTGAGCAACCT 60 22473538 22473557 GAGAAACGATTCCAGAAGCG 59 NA Rattus norvegicus 81 Ifrd2 ENSRNOG00000016150 ENSRNOT00000022092 1 1 1 83 8 116346685 116346703 AGTGAAAGTGTGAACCTGC 58 116346750 116347083 GAAGTCCTCCTCGAGATCC 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000050031 ENSRNOT00000073808 2 1 1 60 4 170194518 170194537 ATCCAAAGTTACGAGAAGCA 57 170194477 170194497 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000090267 3 1 3 60 9 81563546 81563564 TGCCTACTTCTCTTTGCAG 58 81563504 81563524 AATCATGACTGAAACCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 3 1 1 62 17 70041963 70045333 AAGGGCTGGGAAGAATCAG 59 70041919 70041940 TAGGAAATGCCTTGATTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 H2afj ENSRNOG00000045819 ENSRNOT00000073287 2 1 1 75 4 170149240 170149258 CGAGGGACAACAAGAAGAC 58 170149297 170149315 TTGTTGAGCTCTTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000073853 2 1 10 80 15 32817409 32852780 CTTTCTGTCAAGCCAAATGTC 58 32852820 32852840 GAGGGTGATGTTATCAGACTG 58 NA Rattus norvegicus 81 Lrrn4cl ENSRNOG00000026302 ENSRNOT00000036454 1 1 1 123 1 225048299 225048895 TACCCACTGGTCTTGTCCT 60 225048982 225049000 TTGGGAAACCAAGGAGGTG 60 NA Rattus norvegicus 81 Lars ENSRNOG00000018304 ENSRNOT00000025284 1 1 1 80 18 36539836 36539857 TTCAAACAATCCTTCTGACTCC 59 36538895 36539798 TAATTGAATCAGGCTTTCCCAG 59 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 2 2 2 80 1 79953615 79953997 GCTTGGAGAAGAAAGAGGT 57 79954041 79954059 GGTTGAAGACCTCCTTCAC 58 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 3 1 1 81 7 10500316 10500335 TTGGATCCTTCCCAGAAGAG 59 10499963 10500276 CCAATTTGTAGCCTATAGCAGTG 60 NA Rattus norvegicus 81 Slc7a6os ENSRNOG00000020049 ENSRNOT00000027200 3 1 1 82 19 38181549 38182648 GATGAAGATTCCAGAGGCTC 58 38181486 38181504 TATTTGCTCCACACCAGTC 58 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359,ENSRNOT00000008504 3 2 2 119 6 99433618 99433636 ATATCTGTTGGACCACCGG 59 99433960 99433978 CCTTGCCATGTTGGAAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rbm17 ENSRNOG00000018767 ENSRNOT00000025550 2 1 1 80 17 70601769 70602838 TGATATTTGAGATTCCTGGTGC 59 70602878 70602897 TAATTGCCGATTCGACTCTC 58 NA Rattus norvegicus 81 Cited2 ENSRNOG00000056940 ENSRNOT00000086790 1 1 1 296 1 12823587 12824080 AGGACTGGAAATGGCAGAC 60 12824340 12824358 GAGTTGTTAAACCTGGCGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07041179.1 ENSRNOG00000016400 ENSRNOT00000022122 2 1 1 98 X 121612984 121613173 CTTCATGTTACCCGCATCC 59 121613235 121613253 GTAGGAACATGGAAGGCTG 58 NA Rattus norvegicus 81 Armc5 ENSRNOG00000019935 ENSRNOT00000027032 2 1 1 80 1 199656246 199656265 TCTAGCCAACTGCTGTACAG 60 199656308 199657623 AGAATGGTCACCAAAGGGA 59 NA Rattus norvegicus 81 Tspan12 ENSRNOG00000059016 ENSRNOT00000083938 3 1 1 80 4 48879860 48886765 GAAGTTATGGTGCCAGTACAG 59 48879800 48879818 CCTATACCTGGGTAAGCCG 59 NA Rattus norvegicus 81 Nxf7 ENSRNOG00000023256 ENSRNOT00000033752 3 1 1 80 X 106054280 106054300 CTGAGCATTTACCATGAGCAG 60 106054086 106054240 ACACATGCTACTCAGATCTGG 60 NA Rattus norvegicus 81 Otub1 ENSRNOG00000021175 ENSRNOT00000028752 3 1 1 80 1 222453556 222457752 AGAAGATCAAGGACCTCCAC 59 222453495 222453514 CAAACGCTCGATAGAAGCAG 60 NA Rattus norvegicus 81 Rnf145 ENSRNOG00000004602 ENSRNOT00000006436 1 1 1 80 10 30191658 30191681 CTGTACTTTCTAGGGTCTAACCTC 60 30191717 30195741 CTCCACTACCTGAACTAACTCC 60 NA Rattus norvegicus 81 Cdnf ENSRNOG00000026493 ENSRNOT00000036299 2 1 1 80 17 78735199 78735219 CTTTGGATCTCCAACCATGTG 59 78726336 78735161 CTCTTTGCATACTTCACAGTCAG 60 NA Rattus norvegicus 81 Kctd17 ENSRNOG00000000231 ENSRNOT00000046563 1 1 1 80 7 119647622 119648736 AATCGGACAGGGATGAGAC 59 119648778 119648798 GCCTGAGGAAGTTCAATATGG 59 NA Rattus norvegicus 81 Zfp420 ENSRNOG00000037556 ENSRNOT00000032973 2 1 1 60 1 88542779 88542798 TTCTCCACAGACGAATCCAC 60 88542819 88542839 GCTTTCCCACACTCTTTACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serhl2 ENSRNOG00000022932 ENSRNOT00000036586 1 1 1 80 7 123966455 123967760 TCATGGACTTGAATGAAGTGGA 60 123967801 123967819 GGGAGTCTTCCACCTTCAG 59 NA Rattus norvegicus 81 Paics ENSRNOG00000002101 ENSRNOT00000063942 3 1 1 80 14 33569719 33569743 AGATAATGATTCCTGGAGACTATGG 60 33569344 33569685 TCTTTGAGATCCCGATAAGACTG 60 NA Rattus norvegicus 81 Mylk2 ENSRNOG00000008235 ENSRNOT00000011255 1 1 1 80 3 148392354 148392456 GTTCATGGAGTACATTGAGGG 59 148392497 148392516 ATGGTATCCACTTCCGTCAG 59 NA Rattus norvegicus 81 Olr1250 ENSRNOG00000046504 ENSRNOT00000073845 2 1 1 60 4 1658805 1658825 CTATTTCTGTGATCTCCTCCC 57 1658846 1658865 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562265 ENSRNOG00000032454 ENSRNOT00000042939 2 1 1 60 5 44270179 44270197 CTTAGACAAGTGCCAAGCC 59 44270221 44270239 ATACATGGGCTCATCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgals3bp ENSRNOG00000003217 ENSRNOT00000004320 1 1 1 80 10 107419336 107420592 TCTGCTCCAACGATTCCAG 60 107419274 107419292 TGTCAAAGATCTGGCCCAG 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000089229,ENSRNOT00000037115 1 3 3 80 2 174323432 174330976 GGAGAGGAAGAGGTTCAGG 59 174323370 174323391 TTCACCATAAGTCTCTTCAGCA 60 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 3 2 2 81 7 53642212 53645188 TTTCTGTGCATGGTTTGCA 59 53645230 53645251 AGCATGATTTGCAGTAGATCTC 59 NA Rattus norvegicus 81 RGD1561149 ENSRNOG00000008113 ENSRNOT00000010688 1 1 1 80 5 147406659 147406677 GGGAGCTGACAGAGAATGG 60 147406226 147406618 GTTTCTTCTGTGGATCTGAACC 59 NA Rattus norvegicus 81 LOC501282 ENSRNOG00000046883 ENSRNOT00000072870 1 1 1 83 9 10891097 10891116 AGATCGAGTACACCATGGC 59 10891616 10891634 TCACTTCAAACTCCTCGCT 59 NA Rattus norvegicus 81 AABR07003230.1 ENSRNOG00000049445 ENSRNOT00000072699 2 1 1 80 1 99399357 99399478 CACAAGTCACAAGTGAGACTC 59 99399520 99399538 GTCCTTGTTGCAAGATGCC 60 NA Rattus norvegicus 81 Ces2j ENSRNOG00000029744 ENSRNOT00000061734 2 1 1 80 19 491134 491152 AGCCATTATGCAGAGTGGA 59 491194 492295 TTGGCTACTGTCTTGTAGACC 60 NA Rattus norvegicus 81 Olr471 ENSRNOG00000031124 ENSRNOT00000045693 3 1 1 60 3 73345284 73345305 TTTGTAAGTCCCATGTTGAACC 59 73345322 73345344 CGTGTTTCACATCCTTATTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725,ENSRNOT00000057989 2 2 2 80 4 100448526 100461917 CAAGATGGACAGGTAGAAAGTG 59 100448467 100448486 TCCTCTGAAAGCCATGAGTG 60 NA Rattus norvegicus 81 Plekhf1 ENSRNOG00000027724 ENSRNOT00000020383 1 1 1 60 1 94610494 94610512 AGAAGTCCTTCGTGGTCTC 59 94610452 94610471 ATGTGGCTTATCCATTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnoc ENSRNOG00000014231 ENSRNOT00000019117 3 1 1 148 15 48809568 48818457 CTTCAACCTGAAGCTGTGC 60 48809438 48809456 TCGACTGGTAAAGAGCAGC 60 NA Rattus norvegicus 81 Tgfb1i1 ENSRNOG00000019965 ENSRNOT00000054980 2 1 1 80 1 199666086 199666219 CATAACCACTGTCCCTTCC 58 199666261 199666281 AGTCTATCTAGCTCCTGAGTG 58 NA Rattus norvegicus 81 Klhl33 ENSRNOG00000025868 ENSRNOT00000032992 1 1 1 80 15 27814282 27814389 AACTCTCAGGTGGAGTTCC 59 27814220 27814238 ACCAAAGGGAAGAAGCTCC 60 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 2 2 2 80 10 34953500 34954386 TTGGTCTCCAGGCTAAAGG 59 34954430 34954448 TGGAGGCTTGAACTTCAGG 60 NA Rattus norvegicus 81 Zbtb2 ENSRNOG00000019544 ENSRNOT00000026433 3 1 1 82 1 40917043 40921262 TCAGACCAGTGAATGTGTCC 60 40916980 40916998 CGGTGTACATCAGGTGGAG 60 NA Rattus norvegicus 81 AABR07017662.2 ENSRNOG00000047078 ENSRNOT00000066990 1 1 1 80 15 29856713 29856904 AGATTTGCTGGGTGAGAGG 59 29856651 29856669 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Chst4 ENSRNOG00000016953 ENSRNOT00000022749 1 1 1 99 19 41631798 41638249 CAGAATATCGGGATGATGCTG 59 41638310 41638328 TATGACCGGACATGTGGAC 59 NA InUTR Rattus norvegicus 81 AABR07053580.1 ENSRNOG00000051627 ENSRNOT00000080247 1 1 1 80 3 114688366 114688389 TCAAGATCCAGATCTGAATCTAGG 59 114688306 114688328 AGAGTGAGATGATCGTGACC 59 NA Rattus norvegicus 81 As3mt ENSRNOG00000020081 ENSRNOT00000027223 1 1 1 80 1 266494419 266500460 TACATTCAAGGAAGGTGAAGC 58 266500502 266500520 AAATCGTGAGCAAACCGAG 59 NA Rattus norvegicus 81 AABR07032457.1 ENSRNOG00000015806 ENSRNOT00000021161 1 1 1 80 18 66741329 66741844 AGAGTCTACATACAATGTCACCC 60 66741884 66741902 CTCTTGGCCAGAATCTTGC 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318,ENSRNOT00000081804 1 2 2 80 1 22253332 22253351 CCAACTTGCGAAAGAAACAG 58 22252400 22253289 TTCCTTTGACGCTGTTCAC 59 NA Rattus norvegicus 81 Ncor1 ENSRNOG00000055246 ENSRNOT00000081409 3 1 1 80 10 48659739 48659760 TGGAAGGAAATGTAAAGCAAGG 59 48655566 48659698 ACAGCACAGTCCTTTCCTC 60 NA Rattus norvegicus 81 Uxt ENSRNOG00000009893 ENSRNOT00000013476 2 1 1 80 X 1277370 1277391 CCATCGAGACAAGGTATATGAG 58 1277431 1277587 TGATTAGTTTCCTGGAGTCG 57 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 1 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473208 AGAGACTTCAACAGCTCCA 58 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000090445 1 1 8 80 3 100803302 100815565 AATGGTGTCATAAAGTTCCACC 59 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 Dpep3 ENSRNOG00000019757 ENSRNOT00000026809 3 1 1 80 19 37951206 37951224 GCAGATTGACCTCATCCGA 60 37951056 37951163 GTGCTATTCAGACCATCAGC 59 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 3 2 2 94 3 119676287 119676306 GAATGAGGTCAAGTCAGTGG 58 119676112 119676231 CTTCATCAACTTCCCAGACC 58 NA Rattus norvegicus 81 Actr6 ENSRNOG00000007875 ENSRNOT00000010414 1 1 1 80 7 30388654 30389453 AAAGAGATCATATCCTACAGGCAG 60 30388597 30388617 GTAGCACACGTCTTCTTTCAC 60 NA Rattus norvegicus 81 Hacd4 ENSRNOG00000005772 ENSRNOT00000033651 1 1 1 80 5 106746237 106746260 GAGGTCCAAGAGAAATATGTAGTG 59 106742060 106746201 CATGCTGTAAGTGTACCTTACC 59 NA Rattus norvegicus 81 Zfp365 ENSRNOG00000000638 ENSRNOT00000057992 1 1 1 83 20 22063448 22063466 GTGGCTGTGGAAATGATCG 59 22063510 22075304 GACAACTTCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 Mir411 ENSRNOG00000035574 ENSRNOT00000053697 2 1 1 60 6 133858867 133858888 CGTATAGCGTACGCTTTATCTG 59 133858906 133858927 TTTGATACTGAGGGTTAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igj ENSRNOG00000003666 ENSRNOT00000004866 2 1 1 80 14 21178887 21182303 GAGTATCCGAATTGTTGTCCC 59 21182342 21182363 TACACAAAGTTCGTTCTCACTG 59 NA Rattus norvegicus 81 RGD1563581 ENSRNOG00000040101 ENSRNOT00000047043 1 1 1 60 17 2165945 2165963 ATGGAGTCCCTGATTGCTG 60 2165986 2166005 ATTGACAGCTATTTCCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Haus1 ENSRNOG00000046666 ENSRNOT00000073597 3 1 1 80 18 74191649 74191667 CCAGAACATGGACTTCCTG 58 74191239 74191606 CTGGATGAAAGTTGCTCCTC 59 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 1 1 1 65 15 31642299 31644841 AACCTCACTCACATCAGGG 59 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Akip1 ENSRNOG00000013744 ENSRNOT00000018497 2 1 1 80 1 174335868 174338476 AGAGTCATCTTGGCCTATTGAG 60 174338516 174338535 CCCACAGTGACAGAATAGGT 59 NA Rattus norvegicus 81 Tmprss11g ENSRNOG00000029964 ENSRNOT00000060109 2 1 1 80 14 23204026 23204047 ATGGTGGTGCTATATCATCAGG 60 23204087 23205801 CTCCAGAATCACCCTCACAG 60 NA Rattus norvegicus 81 Acsf3 ENSRNOG00000015077 ENSRNOT00000020313 1 1 1 80 19 55630226 55630244 GGAGGCTATAAAGTCAGCG 58 55630287 55630725 TCCAATTACAGCGACATCTG 58 NA Rattus norvegicus 81 Prkaa2 ENSRNOG00000007706 ENSRNOT00000010680 3 1 1 80 5 124578880 124578900 GCAAACCATACGACATTATGG 58 124575882 124578840 GGTATGCATTCACTACCTTCC 59 NA Rattus norvegicus 81 Tmem229a ENSRNOG00000039464 ENSRNOT00000060476 2 1 1 60 4 52349210 52349233 CTCATCACCTTGATGTATTTACCC 59 52349173 52349191 ACAGTAGGTCCTGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arid3c ENSRNOG00000013416 ENSRNOT00000046589 1 1 1 85 5 58113299 58113318 GATGTCCCAATTCACCATCC 59 58111555 58113253 TTCATACAGCTGCTTGAACTG 59 NA Rattus norvegicus 81 LOC100912017 ENSRNOG00000045677 ENSRNOT00000050551 1 1 1 80 1 213680884 213681932 GTATTCTGACCTTGTCACACTG 59 213681973 213681991 GGGAAGGAGCTACCTTCAG 59 NA Rattus norvegicus 81 Nipa1 ENSRNOG00000042702 ENSRNOT00000068501 3 1 1 85 1 114393365 114393383 CGTGCTGATCATCCATTCC 59 114388133 114393316 CCACAAACACTGGATTGGT 58 NA Rattus norvegicus 81 Tomm40 ENSRNOG00000018556 ENSRNOT00000025281 1 1 1 80 1 80629080 80629099 CTGTTTCCAGTTCAGATGGA 58 80628485 80629037 TACTGTATGGGTCACCTGG 58 NA Rattus norvegicus 81 Tomm40 ENSRNOG00000018556 ENSRNOT00000025281 2 1 1 81 1 80629081 80629100 GCTGTTTCCAGTTCAGATGG 59 80628485 80629038 TACTGTATGGGTCACCTGGA 60 NA Rattus norvegicus 81 Adamts9 ENSRNOG00000023257 ENSRNOT00000057045 3 1 1 80 4 124819064 124819084 CACTGAACTTCTACACCAACC 59 124817578 124819025 CATACCCAGTGTCTAAGAACTC 58 NA Rattus norvegicus 81 Plrg1 ENSRNOG00000006655 ENSRNOT00000009113 3 1 1 80 2 182055631 182055652 TCAGAAAGTCGGTTACTAACAG 58 182055693 182056501 AGTTTCTTCTGTCGCAGTC 58 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 1 1 1 128 1 80141722 80141740 TGTTCTACTTGGGCATCCG 60 80141832 80158291 TTTCCACCCAGTGGTACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100365347 ENSRNOG00000043089 ENSRNOT00000065401 1 1 1 90 15 31167876 31167894 TTTCACTGGTGGTCCTGTG 60 31168496 31168514 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07001923.1 ENSRNOG00000047884 ENSRNOT00000072607 2 1 1 60 1 62114193 62114213 GGTCTAAATCAAGGAGTCCAC 58 62114153 62114175 CCTTATTAAGCACTGTACCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam26d ENSRNOG00000000580 ENSRNOT00000000708 1 1 1 80 20 27575916 27577699 CAGGTATCAGTCACAGATGC 58 27575855 27575874 CTCGCCAGACATTTAGAGAC 58 NA Rattus norvegicus 81 AABR07031158.1 ENSRNOG00000043413 ENSRNOT00000073306 2 1 1 139 18 2182271 2182289 TTTGTGATGGAGGAGGGTC 59 2181403 2182170 AGATGGCGAGTTATCACAGAG 60 NA Rattus norvegicus 81 Nkx2-2 ENSRNOG00000012728 ENSRNOT00000017364 2 1 1 105 3 141409631 141410629 CCTCCAATACTCCCTGCAC 60 141409544 141409562 CTCCTTGTCATTGTCCGGT 60 NA Rattus norvegicus 81 LOC100364629 ENSRNOG00000025713 ENSRNOT00000036335 1 1 1 60 3 21313283 21313301 CCAGCATCTTCATACACCC 58 21313323 21313343 GCAGGTATCAATGAAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933,ENSRNOT00000088121 1 2 2 80 1 190352252 190352366 TACCCACAGCTAAGAGTACC 58 190352409 190352427 TGAGCAGCAGTGTAAAGAC 58 NA Rattus norvegicus 81 Araf ENSRNOG00000010838 ENSRNOT00000039911 1 1 1 80 X 1380890 1380911 TTGTGCTCTATGAGCTTATGAC 58 1380018 1380852 GACCCACCATAAAGATGATCTG 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214,ENSRNOT00000038264 3 2 2 80 13 103307637 103308823 CACACGGAGATTGATCATTGG 60 103308865 103308883 CTCCTTGATTGCCGAAGTC 59 NA Rattus norvegicus 81 Lingo2 ENSRNOG00000005634 ENSRNOT00000007449 2 1 1 60 5 51468142 51468166 CCTTTAAACACCTTGTATACCTGAC 60 51468106 51468127 ATAGTGCTGATGGGATTGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 3 2 2 82 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141008 11142016 GAAGGATAAAGCCCTTGTGAG 59 NA Rattus norvegicus 81 Olr1294 ENSRNOG00000050283 ENSRNOT00000075732 1 1 1 60 15 35549697 35549716 ACTTGCAGTTCCCATATCTC 57 35549736 35549757 AGTATGTGAATGCTGTAGATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1294 ENSRNOG00000050283 ENSRNOT00000075732 2 1 1 60 15 35549113 35549132 TGATTGCATTGATTTGGCTC 58 35549152 35549173 CTGCTGAGGAAATAATACATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dchs1 ENSRNOG00000031643 ENSRNOT00000042865 1 1 1 80 1 170605828 170605847 TGACCTACAGCCTTCAACAG 60 170605570 170605787 GGAGTGTAGTCACTTCTCCAG 60 NA Rattus norvegicus 81 Lsm8 ENSRNOG00000058677 ENSRNOT00000089007 1 1 1 86 4 45558572 45560502 GAGATAATGTAGCAGTCATTGGG 59 45560548 45560566 AGTTCAGAGGTTCTGCTCG 59 NA Rattus norvegicus 81 B3galt6 ENSRNOG00000019979 ENSRNOT00000027060 3 1 1 60 5 173424821 173424839 ACCAGTAGATGTGCAACGA 59 173424779 173424797 GCCTCGAGATTTGTACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbp4 ENSRNOG00000006444 ENSRNOT00000008737 1 1 1 80 4 161753935 161754630 CTTGTATTTGAGGTGGAGCTG 59 161753875 161753893 TATTCTGCGGATGATCCCA 58 NA Rattus norvegicus 81 Klk4 ENSRNOG00000018864 ENSRNOT00000025614 2 1 1 82 1 99831624 99831886 CACTGCATACAGGACTCCT 59 99831932 99831950 TCTAACATCCGACTGCCAG 59 NA Rattus norvegicus 81 LOC100365136 ENSRNOG00000049881 ENSRNOT00000048256 3 1 1 81 1 38486273 38486293 GAAGTGTAAATTCGAGAGGCA 59 38484844 38486231 AACATCCAGACTGTAGTCCC 59 NA Rattus norvegicus 81 Akr1c12l1 ENSRNOG00000050243 ENSRNOT00000064884 3 1 1 80 17 69591548 69592060 GACACATGGGAGATGTTGG 58 69592103 69592122 CTGCTTGTGGTTAAAGTTGG 58 NA Rattus norvegicus 81 Rela ENSRNOG00000030888 ENSRNOT00000045233 1 1 1 80 1 220994894 220994912 TGTGAAGAAGCGAGACCTG 60 220994953 220995300 TCCTCTATGGGAACTTGAAAGG 60 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 2 2 2 80 10 37047186 37048072 TTGGTCTCCAGGCTAAAGG 59 37048116 37048134 TGGAGGCTTGAACTTCAGG 60 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309,ENSRNOT00000011592 2 2 2 80 X 1712662 1712781 CCACTGAGGATATCAACAAACG 60 1712603 1712622 TGAGTGTCAGCTTCTCAAGG 60 NA Rattus norvegicus 81 Tacstd2 ENSRNOG00000007740 ENSRNOT00000010156 3 1 1 60 4 98342344 98342363 CCACATCCTCATTGAGTTGC 59 98342303 98342322 TAGGTCAGAGTGGTTGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag6l ENSRNOG00000022021 ENSRNOT00000002513 3 1 1 80 17 85433453 85433471 AGAACCGGGTTCTATCCTC 58 85433509 85437712 GGAGAATAATACCTCACTATCTCCT 59 NA Rattus norvegicus 81 Bnipl ENSRNOG00000021116 ENSRNOT00000028671 2 1 1 80 2 196423321 196423339 GGTAGACGAATTGGAGACG 58 196420413 196423277 CGAGGCAAATCATCTTCCC 59 NA Rattus norvegicus 81 Cachd1 ENSRNOG00000010514 ENSRNOT00000014354 1 1 1 80 5 119804511 119804530 GGCGTCCTCAGAATTTATCC 59 119804571 119805717 TACTGCATGAAGATACCACTG 58 NA Rattus norvegicus 81 Lcn1 ENSRNOG00000033761 ENSRNOT00000042910 1 1 1 80 3 4233241 4233695 GAGAATCAGGATGTGTCAGG 58 4233736 4233756 AGATCCAAACTTCTTGTCAGG 58 NA Rattus norvegicus 81 Mir217 ENSRNOG00000035518 ENSRNOT00000053641 1 1 1 60 14 113119558 113119578 GATACTGCATCAGGAACTGAC 59 113119600 113119618 GGCAATGCATTAGGAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 3 3 3 80 7 120874286 120874307 CAATTGAGGACTATGAGTTGGA 58 120873693 120874245 TCAGTTTCTTGACTCCGTC 57 NA Rattus norvegicus 81 Oxld1 ENSRNOG00000047517 ENSRNOT00000075206 3 1 1 83 10 109629191 109629813 GAGAGCTTTCTTCAGGGCA 60 109629126 109629146 GTGAAGAACACTGTGTCTTCC 59 NA Rattus norvegicus 81 Ngdn ENSRNOG00000018069 ENSRNOT00000024337 3 1 1 81 15 33682287 33682382 CAGCCTCAGTGAGAATGAC 58 33682765 33682783 CTCCTCATCCTCAGAGCTC 59 NA Rattus norvegicus 81 Ptges2 ENSRNOG00000014050 ENSRNOT00000019184 2 1 1 80 3 11426108 11426129 AGGACCGAGATTAAATTCTCCT 59 11426170 11428771 ATTGAGCTGTTGCAAGCTG 60 NA Rattus norvegicus 81 RGD1565911 ENSRNOG00000042840 ENSRNOT00000068178 2 1 1 60 5 87354136 87354157 TCACAGTCCTGAAACAAATGAG 59 87354176 87354196 TATTGTATGTCCTTCAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 1 1 1 80 4 150141633 150141653 CCTCCTTTGAAAGTGAAGGTC 59 150141691 150142511 CTCTGTTTAGGAGAGTAGTCCTG 60 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 1 1 1 60 3 11589255 11589927 GGGTTGTTCATCACCTATGTG 59 11589949 11589967 TTCACTGAGCCTTCTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 3 1 1 65 3 11587983 11588004 GTTAGCTTGATCATCTTCACCT 58 11588030 11589170 CTGGCTGTCAATGAATGGC 60 NA DesignNoJunction Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208585459 208586208 TCTGAGGTGTTTAGAAGTCG 57 208586249 208586269 GGTAAGAAGGGAGTGATTGAG 58 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 3 3 3 80 2 208585459 208586209 TCTGAGGTGTTTAGAAGTCGA 59 208586249 208586269 GGTAAGAAGGGAGTGATTGAG 58 NA Rattus norvegicus 81 AABR07042039.1 ENSRNOG00000032088 ENSRNOT00000047160 1 1 1 84 X 146403236 146403254 GAAGGGCTCCTGGATTCAG 60 146401565 146403192 GTGCTTAGAGTTTCCATTAGTCC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 2 2 3 80 20 3316005 3316188 AATCGCATCAATAAGGCCG 59 3316230 3316250 TTTCCCTTTCGATTTCTCCTC 58 NA Rattus norvegicus 81 Tnfsf18 ENSRNOG00000026607 ENSRNOT00000039221 2 1 1 83 13 79378913 79384130 ACTTCACTCAAGCCAACTG 58 79386663 79386681 TTCAGGAGCTGTCATTTGC 59 NA Rattus norvegicus 81 AABR07005416.2 ENSRNOG00000048649 ENSRNOT00000072650 3 1 1 60 1 182843101 182843121 CCGTATCATTCCAGAGACTCC 60 182843141 182843161 TAAGATGTCGCTGTCAATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 2 2 2 80 5 169553005 169553025 GATGCTACTTCAGAAGATGCT 58 169553067 169554076 AACATCTTGGTCATCTGGG 57 NA Rattus norvegicus 81 Mdh2 ENSRNOG00000001440 ENSRNOT00000001958 2 1 1 81 12 23948699 23954249 CTTCAGCCCAGAACAATGC 60 23948636 23948656 TTCTTCAGGAGGAGTGAAAGG 60 NA Rattus norvegicus 81 Mpped1 ENSRNOG00000010834 ENSRNOT00000014720 2 1 1 80 7 124747110 124749167 ACATCCATGAAGGGTATGGAG 59 124749208 124749227 GCTGATAGTTCACAGTGCAC 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 3 2 2 80 10 109973988 109974007 GGCTTGTCCAAGAATAAGCT 58 109972709 109973946 TGCATATTTGGGTTTCAGGG 59 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000077465 1 1 2 80 8 21489304 21489322 AACCCAGATCAGAGAACCC 59 21481709 21489263 GATGAGCTGATATCCTACTGTG 58 NA Rattus norvegicus 81 Lsm5 ENSRNOG00000042126 ENSRNOT00000065625 2 1 1 106 4 87017932 87017952 GCTTGTGGACAAGTGTATAGG 59 87017598 87017867 CCAACACCATATTGACAAAGTC 58 NA Rattus norvegicus 81 Ing3 ENSRNOG00000005496 ENSRNOT00000007476 2 1 1 80 4 49038577 49038597 AATCTGATTCCAACAGTCAGG 58 49038634 49040221 CATAGGATACCTGATTACAGATGC 59 NA Rattus norvegicus 81 Ing3 ENSRNOG00000005496 ENSRNOT00000007476 3 1 1 80 4 49038629 49040217 GTATTGCATCTGTAATCAGGTATCC 60 49042053 49042074 TAGTGGAACCACTCTATTGGAC 59 NA Rattus norvegicus 81 LOC100911127 ENSRNOG00000055735 ENSRNOT00000091636 3 1 1 60 15 36157328 36157348 CTATTGTACCGATGCTGAACC 59 36157288 36157309 GCAATACTGACATCCTTATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192,ENSRNOT00000065720 3 2 2 80 9 96804896 96804914 TTACCCAACTCTCCAAGCC 59 96804958 96806127 ACCTCCGTTACTTGTCTGG 59 NA Rattus norvegicus 81 Psmd7 ENSRNOG00000014097 ENSRNOT00000019104 2 1 1 80 19 39643402 39643420 CCAAACTGCACAAGAACGA 59 39642617 39643362 CATCAATAATGACCAGTACCGAG 59 NA Rattus norvegicus 81 Rgn ENSRNOG00000007949 ENSRNOT00000010984 2 1 1 80 X 1837854 1846026 GGAGATACTTTGCTGGTACC 58 1837793 1837811 AAAGGGAGTACAAGGACCC 59 NA Rattus norvegicus 81 mrpl9 ENSRNOG00000020869 ENSRNOT00000028316 1 1 1 80 2 195685186 195685205 ATAAGTTGGTGGAGGACACG 60 195685247 195685951 CTCCAATTTCGTCCACAGAC 59 NA Rattus norvegicus 81 RGD1565894 ENSRNOG00000050226 ENSRNOT00000015408 3 1 1 60 18 59480035 59480056 ACATCAGAGTACATTTGTCCAG 58 59480074 59480095 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Net1 ENSRNOG00000017765 ENSRNOT00000023945 3 1 1 80 17 70016242 70016389 TCCCTCTACACGAAGATCTG 58 70016431 70016450 GAATGTGACCGATCTGTTCC 59 NA Rattus norvegicus 81 AABR07004891.1 ENSRNOG00000033196 ENSRNOT00000025728 3 1 1 88 1 166187030 166189686 GTAAACAGGAGAAGGAGAAAGAG 59 166186964 166186982 CTCTTCCTCCTCTTCCTCC 58 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274,ENSRNOT00000083830 1 2 2 83 7 125950662 125950680 ACCTGCTGGAGATCTTTGG 59 125950727 125952875 CCCATTGAAGGACCTTCGT 60 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000013291,ENSRNOT00000024624 2 2 2 80 16 7096437 7096533 GATGAAGCTCAATGTAGAAGAGG 59 7096571 7096591 AATACGATAAGCAGAGGAGGT 59 NA Rattus norvegicus 81 Diras2 ENSRNOG00000032328 ENSRNOT00000044842 2 1 1 60 17 12763026 12763045 CTTCATCCTGGTCTACTCCA 58 12763067 12763086 ATAGATGGGCTTGAGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssfa2 ENSRNOG00000005865 ENSRNOT00000008046 3 1 1 80 3 66598466 66598484 GATGACTTGTCACTGGGAG 58 66600297 66600402 GGCCAAGATATTGTTGCAG 57 NA Rattus norvegicus 81 Olr744 ENSRNOG00000028267 ENSRNOT00000032617 2 1 1 60 3 79165447 79165465 CATCACCGACTTACTTGCT 58 79165405 79165423 TATCTGAACCAGACAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403,ENSRNOT00000064250 3 2 2 80 18 61335684 61340359 ATGGACCATATCAAGTCTATGC 58 61340398 61340418 GCTCAAAGGCAAGTTTATACC 58 NA Rattus norvegicus 81 Sult4a1 ENSRNOG00000046975 ENSRNOT00000075099 1 1 1 80 7 124972603 124972623 ATTGGCCTCATGAACATTGAC 59 124970924 124972563 CGTCAGTTCCTTGATGATGTC 59 NA Rattus norvegicus 81 Phf10 ENSRNOG00000061312 ENSRNOT00000085273 2 1 1 80 1 56962590 56963332 GCGGAAATATCCAGATTTAGAGC 60 56962532 56962553 TCCGTGATGACGTTTAATTCTC 59 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 1 1 1 176 12 23755363 23756928 GAATTCTTGCATACACAGCC 58 23757599 23757617 GTCATCGTCGCATACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Kcne3 ENSRNOG00000017054 ENSRNOT00000048437 3 1 1 85 1 165190033 165195860 CAGAGTCAGATCACATTCCAG 58 165195906 165195925 TCTTGTACCAGGTCTCAGTC 59 NA InUTR Rattus norvegicus 81 Mall ENSRNOG00000015599 ENSRNOT00000021082 2 1 1 60 3 120276580 120276599 ACTACATCAATGTTGCAGCC 59 120273891 120273909 TGCAGGATATAGAGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043,ENSRNOT00000086432 3 2 2 80 6 52148401 52148419 TGTCGAGAAGTACAGAGGC 59 52148459 52149852 TATCTAAGACCTTCAGGACAGTG 59 NA Rattus norvegicus 81 Usmg5 ENSRNOG00000020296 ENSRNOT00000027496 3 1 1 82 1 266862811 266862829 AAAGTGATGGCCAATTCCA 58 266862660 266862768 CAGGACACAATTCATTCTACCT 58 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728,ENSRNOT00000042506 2 2 2 80 10 72177855 72179060 CTAAAGCAGTTTATTCAGCGAC 58 72177796 72177815 GACTTCACGTGATGTTACCA 58 NA Rattus norvegicus 81 Upk3bl ENSRNOG00000038896 ENSRNOT00000059451 1 1 1 80 12 23655240 23657124 GGTCATATCTGCTTGTTGCT 58 23655179 23655197 TGATGCGTGTGATATCGTC 58 NA Rattus norvegicus 81 Zg16 ENSRNOG00000016857 ENSRNOT00000022758 3 1 1 80 1 198484202 198485180 ACATAATAGGTCTCCAGGTGC 59 198484142 198484160 AGATCTCCTCCAGGTCTCC 60 NA Rattus norvegicus 81 Skida1 ENSRNOG00000033330 ENSRNOT00000040697 2 1 1 81 17 84828973 84828991 CTCCAGTTTGTCAGCTCCA 60 84828908 84828928 CTTCCTCCCTTTCCTCCTC 59 NA Rattus norvegicus 81 Mbd3 ENSRNOG00000028956 ENSRNOT00000049170 1 1 1 92 7 12184803 12184821 CTGTGGAGAAGAACCCTGG 60 12184877 12185493 CCTCCTGCTTCCTGATGTC 60 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000022441 3 1 2 124 1 78820433 78821652 AATGGGATCTGCAGTCCTG 60 78821740 78821758 ATCGATGTTCACCTCCAGC 60 NA InUTR Rattus norvegicus 81 Gnrhr ENSRNOG00000002011 ENSRNOT00000002755 1 1 1 80 14 23493743 23493762 TCATGCTAATCTGCAATGCC 59 23493804 23496668 GATTCAGCTGTAGTTTGCGT 59 NA Rattus norvegicus 81 AABR07052523.1 ENSRNOG00000028543 ENSRNOT00000031418 2 1 1 60 3 59408809 59408827 AACTATTGCACCTGCTCTG 58 59408851 59408869 GTCAATCTTCTCCTGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 3 1 2 96 20 3178446 3178621 ATGCTCATGTTCTAGGCAG 57 3179225 3179243 GCCCAGTCATTCAAATGTC 57 NA InUTR Rattus norvegicus 81 LOC680121 ENSRNOG00000009920 ENSRNOT00000013159 1 1 1 60 11 13500695 13500714 CATCCTCAATGTTTCTGCTG 57 13500735 13500755 GGTGATGGTGATCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680121 ENSRNOG00000009920 ENSRNOT00000013159 2 1 1 60 11 13499954 13499973 GGTCAACCATTTCATTGCTG 58 13499995 13500014 CTTGTTCTCACTGATGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipn ENSRNOG00000057173 ENSRNOT00000078405 1 1 1 80 1 252384744 252386835 CCATGATCAAGCTTATGTTTGG 58 252386875 252386894 TGCAGACTGTGACATAAGAC 58 NA Rattus norvegicus 81 Vps72 ENSRNOG00000021081 ENSRNOT00000028625 1 1 1 80 2 196278155 196284101 GCTTCACTGAGGAGTCTGG 60 196284142 196284163 TGTCAAAGTCAGAGTCTACCTC 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 2 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696096 238696117 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35a ENSRNOG00000031641 ENSRNOT00000042285 3 1 1 60 5 164923388 164923408 AATTGAAGGTGTTTATGCCCG 60 164923430 164923448 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1a ENSRNOG00000018502 ENSRNOT00000024966 3 1 1 84 8 116679454 116679472 GCACTATGGGTGTCATGGT 60 116679520 116680261 TTGTAGCCATCTGCATGGA 59 NA Rattus norvegicus 81 Rn60_X_0707.3 ENSRNOG00000051215 ENSRNOT00000076817 2 1 1 60 X 69744112 69744131 AAAGTGGTTGAGTTCTGCTG 59 69744071 69744089 CCTTTCTCATCGGGTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000042418 3 1 2 80 4 147924641 147948467 TACAGGAAGAGCGATATAGATGTG 60 147924584 147924603 TCAGGATCTCATTCTGGTGG 59 NA Rattus norvegicus 81 Pygm ENSRNOG00000021090 ENSRNOT00000028636 1 1 1 80 1 221760829 221761101 CTTTCCCTGATAAGGTGGC 58 221761145 221761163 CCACCAGAATCCTCATCAG 57 NA Rattus norvegicus 81 Pstpip2 ENSRNOG00000016987 ENSRNOT00000022833 2 1 1 80 18 74282484 74282656 AGAGGACTCAGACAAAGCG 59 74282698 74282718 TTAATGTGTTCACTCTGCCAG 59 NA Rattus norvegicus 81 Bmi1 ENSRNOG00000016585 ENSRNOT00000064257 1 1 1 95 17 85366775 85366793 GAAGTTGCAGATGAGGACC 58 85366852 85367026 TACTTTCCGATCCGACCTG 59 NA Rattus norvegicus 81 Fut11 ENSRNOG00000009274 ENSRNOT00000012300 2 1 1 81 15 4033674 4033692 ACACATGGACTGTCCAGTG 60 4031641 4033629 CCACATTTCCTTCCAGCTG 59 NA Rattus norvegicus 81 Pou5f1 ENSRNOG00000046487 ENSRNOT00000084526 3 1 1 80 20 3748655 3748882 GCGTTCTCTTTGGAAAGGT 58 3748593 3748614 TACACATGTTCTTAAGGCTGAG 58 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 2 2 2 80 1 89315333 89316139 CAGAAGCGGAATATGGGTG 58 89315271 89315290 AACCAGCTCTGAGTAATGGA 59 NA Rattus norvegicus 81 Pirt ENSRNOG00000037852 ENSRNOT00000057503 3 1 1 145 10 53466895 53466913 AACTCATTGCCAGCTTCCT 60 53481266 53481284 GACCTCTCGTCTACCTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07055446.1 ENSRNOG00000050691 ENSRNOT00000074535 2 1 1 191 7 3631078 3631097 TAATCGTGTGGAAACAACCG 59 3631448 3631470 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07017772.1 ENSRNOG00000049108 ENSRNOT00000072686 1 1 1 81 15 30910068 30910186 GATAAACTTTCTCCTGAGAGTTGC 60 30910225 30910244 AGAGGCTTCTTCAGAGACAG 59 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784,ENSRNOT00000087085 3 2 2 80 20 20641376 20641396 CATCTGCACCAACTACAACAG 60 20640839 20641335 AAGTACTCCTGGTTGTCTGC 60 NA Rattus norvegicus 81 Rn60_X_0750.2 ENSRNOG00000051310 ENSRNOT00000076781 2 1 1 60 X 74188562 74188581 TGCTTCCCAAGCTCTATGTC 60 74188604 74188622 ACCTTGCTATGAATGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 2 1 1 60 17 49517069 49517088 TTCAGAAGCAGCAAGATCCA 60 49517111 49517129 TCTGAGACTAGAGGGAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir331 ENSRNOG00000035543 ENSRNOT00000053666 3 1 1 60 7 34881149 34881167 TTCTAGGTATGGTCCCAGG 58 34881107 34881125 TGGTTCTAGGATAGGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 2 2 2 80 10 13736555 13736682 TACTCTGAAGAAACGGAAGGT 59 13736724 13736742 AGCCAAATCAGGATCCCAG 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669,ENSRNOT00000087957 1 2 4 80 1 64011622 64011716 CCAGAAGAGGTCAAACCCA 59 64011989 64012009 CCATCCTTAGTTTCCATGTCC 59 NA Rattus norvegicus 81 Calml3 ENSRNOG00000031955 ENSRNOT00000046667 2 1 1 60 17 70072611 70072632 GTAGATGAAATGATACAGGCGG 59 70072651 70072671 ATTCCTCATAGTTCACTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx38 ENSRNOG00000014619 ENSRNOT00000019810 1 1 1 80 19 42118150 42119331 AAGTGGACTACAGGACAGAG 59 42119373 42119392 TCTTCTTCGCAAACTCACTG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 3 2 2 81 5 124021424 124143313 GGAAGAAAGGTCAGGATCG 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 RGD1310495 ENSRNOG00000000589 ENSRNOT00000000720 1 1 1 80 20 45122560 45123855 CCACTCCCTTTCTTTCCCA 59 45122498 45122519 ACTAGAACATAGGTTCCGATGG 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656,ENSRNOT00000080829 1 2 2 80 6 126460601 126460622 GTGAATCCATCTTCTTCAACAG 58 126455322 126460560 CCTCAATCTTGTCCAGCTC 58 NA Rattus norvegicus 81 Olr1657 ENSRNOG00000059328 ENSRNOT00000092195 3 1 1 60 17 44947689 44947710 CAGTTCCCACTTAATCGTTGTC 60 44947650 44947672 CTGGAGGTACATGTATATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r121 ENSRNOG00000005717 ENSRNOT00000007521 1 1 1 60 4 166868567 166868585 TCTACCCTTCAAGCCACTC 59 166868525 166868549 CTGGAATGCCTTAGATTAGAATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195,ENSRNOT00000084737 1 2 2 80 5 159718313 159718333 TATCCCTTACACCAACCAGAG 59 159718375 159719596 GACAATGCAGTTCCACCAG 59 NA Rattus norvegicus 81 Clec4a3 ENSRNOG00000010018 ENSRNOT00000013308 3 1 1 80 4 155915377 155916293 GAAGAGCAGGATTTCCTGC 59 155915315 155915334 TTGTCGATGACCTGGATCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164,ENSRNOT00000091573 1 3 3 80 8 117773126 117773148 GTAAAGTGGAGTCCATATTCCTG 59 117773185 117774817 GCCTGGATATGTCTACATTCTG 59 NA Rattus norvegicus 81 Olig1 ENSRNOG00000028648 ENSRNOT00000002827 1 1 1 60 11 31428594 31428612 CCATCTCGTCATCCTCCTC 59 31428636 31428654 GCAGGTTTAGGGAGAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021114,ENSRNOT00000021229,ENSRNOT00000021347,ENSRNOT00000021226 3 5 5 80 1 259379105 259382228 CACAGGATTTATGTAGCTACCA 58 259379046 259379065 TATCTCCATCTCGGAGTTCC 58 NA Rattus norvegicus 81 Styxl1 ENSRNOG00000023366 ENSRNOT00000046343 3 1 1 81 12 23968600 23974929 GACGACTCTGAACTCTTACC 58 23974973 23974991 GGATATAGACAGGTTGGCG 58 NA Rattus norvegicus 81 Olr324 ENSRNOG00000021070 ENSRNOT00000028604 3 1 1 60 1 228537254 228537273 GACAGAGCCATCTCAATCAC 59 228537213 228537233 TGTAGATCATTGGGTTCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl7a ENSRNOG00000047737 ENSRNOT00000044551 3 1 1 89 3 5460961 5460979 ATCATCAAGGGAAAGGCCA 59 5461032 5461263 CTTGTCTTCCGAGTTCACC 58 NA Rattus norvegicus 81 Tas2r144 ENSRNOG00000028130 ENSRNOT00000037194 2 1 1 60 4 71589531 71589552 TAAGACCAATGTACTCAACCTG 58 71589571 71589591 GAACAAAGGAATGAAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx1a ENSRNOG00000029165 ENSRNOT00000049601 2 1 1 80 12 24688127 24691478 CCTCTGGGATCATCATGGA 58 24688065 24688084 ACTTGATGATCTCACTGTGC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814,ENSRNOT00000081649 3 2 2 80 10 72304274 72304293 CAGCACTGATGACCAAAGAG 59 72303194 72304232 AGAATTCCTGAATGGCACGA 60 NA Rattus norvegicus 81 Pnmt ENSRNOG00000046057 ENSRNOT00000073486 1 1 1 81 10 86341865 86341993 CATCGAGGACAAGGGAGAG 59 86342037 86342056 CACATCAATGGGCAAGACTC 59 NA Rattus norvegicus 81 Cdh15 ENSRNOG00000027954 ENSRNOT00000033352 2 1 1 80 19 55683491 55683898 AAGGATGAGTTCTTTATGGAGG 58 55683937 55683957 CAGATCCTTGTCTTCTACCTC 57 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669,ENSRNOT00000003526 2 2 2 80 17 90737506 90737526 AACAACACCAAAGAACTGGAC 59 90735508 90737467 TTTGCTTTCGTTACTTAGGGTG 59 NA Rattus norvegicus 81 Lgr4 ENSRNOG00000005715 ENSRNOT00000007681 3 1 1 80 3 101122369 101123608 ACTCAAAGTCCTAACACTCCA 59 101123650 101123668 GACTGCAAAGCACTCAGTC 59 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 2 2 2 82 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712679 41712702 CTGACTGGTAATATTCCTCTTCCT 60 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 2 2 2 80 20 27415891 27415910 TGAGAAGATAGTGTTCACGG 57 27415952 27426212 CCACTTCTTCTAATCACCCA 57 NA Rattus norvegicus 81 LOC100910429 ENSRNOG00000004588 ENSRNOT00000006050 2 1 1 80 7 129749878 129781997 CATAGGTAATACAGAAGGACTGTG 59 129782036 129782054 ATGCAGCAGACTTCTTCCT 59 NA InUTR Rattus norvegicus 81 LOC102554167 ENSRNOG00000030162 ENSRNOT00000043609 3 1 1 60 14 81043712 81043732 GAGGTCTCAGTCCTAGATCAG 59 81043754 81043772 TCAGCATTTCCTTGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 1 1 1 80 9 81884814 81884833 TACACCGAGACATGAAACCT 59 81884876 81885528 CTCGGGCAAATCCAAAGTC 59 NA Rattus norvegicus 81 Ehd1 ENSRNOG00000043503 ENSRNOT00000054830 1 1 1 80 1 221661705 221661725 GTCTCTACCAAGAAATGCTGC 59 221661767 221664609 ATGTAGGCATGGACCTTGG 60 NA Rattus norvegicus 81 Cx3cl1 ENSRNOG00000016326 ENSRNOT00000022128 3 1 1 114 19 10648703 10648721 CGAAATGCAACATCACGTG 58 10647109 10648625 CTCGTCTCCAGGATGATGG 59 NA Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 2 1 1 80 8 116870183 116870201 CCATGAAAGCTGTGCTTCG 60 116870030 116870139 GGTTCTTCTCCCAGACCTC 59 NA Rattus norvegicus 81 Slc2a8 ENSRNOG00000022274 ENSRNOT00000022327 1 1 1 80 3 12023193 12023211 GGTTCTGTTCACTGCTGTG 59 12022687 12023149 ATGATCACACCCGACAAGG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000076441 2 2 4 99 9 111219327 111220646 TTAGGACCACTTCGAAGCA 59 111219246 111219264 ACTCATGGTGATCCTCCTG 59 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974,ENSRNOT00000082392 3 2 2 80 16 32864336 32864354 GTCAACTACTCACCCAACG 58 32861323 32864294 TTCAAACACCTTACAGAGACC 58 NA Rattus norvegicus 81 Chrd ENSRNOG00000001750 ENSRNOT00000002394 1 1 1 80 11 83864470 83864488 CCTAGAGAAGATGGGTGGG 59 83864264 83864426 ACGCTTTGAAGGACATCAC 59 NA Rattus norvegicus 81 Vom1r73 ENSRNOG00000052492 ENSRNOT00000078886 1 1 1 60 4 87758447 87758466 CTCTATCTGTACCACCTGCC 59 87758487 87758507 GGTACTCGGACTGATAGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679960 ENSRNOG00000003062 ENSRNOT00000004086 2 1 1 60 X 72449070 72449091 ACAAACAAGTTCTACATGCTGG 60 72449110 72449130 TTCTTTCCCACTGTAACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr336 ENSRNOG00000021078 ENSRNOT00000028617 1 1 1 60 1 229417256 229417276 ACTGTTTGTCTATATGCTCCC 58 229417296 229417316 AGAAGCCATCTTGTCATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 3 2 2 80 20 32059002 32060483 GCTCTTACAGTTTGCCAGG 59 32058940 32058958 AGAGGCCACTTGATGTACC 59 NA Rattus norvegicus 81 Zfp598 ENSRNOG00000012434 ENSRNOT00000065827 3 1 1 81 10 14044441 14044460 CAACAAACGGTCCTGTAAGC 60 14044504 14044622 GGTGGGAGGGTATTTGAGG 60 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470,ENSRNOT00000091230,ENSRNOT00000059814 3 3 3 80 14 34166881 34166899 GAAAGCAACCACCTGATCC 59 34166624 34166839 CATGTGGTTCACAAGGAACTC 60 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 2 1 1 64 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236312 124236336 CTCTGAATCTTCCTAAGTTTAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Otub2 ENSRNOG00000009117 ENSRNOT00000012124 1 1 1 80 6 127295679 127297612 AGAGATCCTCAAGTTCAAAGAG 58 127297650 127297671 CTGAACTTATGTTCCTCAAAGC 58 NA Rattus norvegicus 81 Esco1 ENSRNOG00000014031 ENSRNOT00000033312 3 1 1 80 18 1805772 1812911 CTGTAAAGTATGTGGGCTGGA 60 1805712 1805735 CTTCAGGGAGAACCATTATTATCC 59 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695,ENSRNOT00000086409 1 2 2 80 3 140078178 140078199 CTTGAATTGGACACTGAAATCG 58 140078238 140082463 CAAGTAATAGCCTCCTTCTCC 58 NA Rattus norvegicus 81 Pfn3 ENSRNOG00000047752 ENSRNOT00000072298 2 1 1 152 17 9746753 9746771 TATCCGTGACTACCTGCTG 59 9746886 9746905 GTCTTATTGAGGATGCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsx ENSRNOG00000002925 ENSRNOT00000003922 1 1 1 80 X 74274456 74275074 CTCTGATCTGGATGACGCT 59 74276332 74276351 TGAAGAATATCTTGCAGGCG 59 NA Rattus norvegicus 81 Dnajc1 ENSRNOG00000000150 ENSRNOT00000000162 2 1 1 80 17 85064563 85064584 AGCTTTCACTAACCTTACATCC 58 85063987 85064524 CATAAATGGCCACCAATTGTC 58 NA Rattus norvegicus 81 Unc5b ENSRNOG00000000567 ENSRNOT00000038537 2 1 1 81 20 30357296 30357316 GAGGTACCCTTGGATCATGAG 60 30356380 30357253 TCTTGAGCCATTCCACCTC 59 NA Rattus norvegicus 81 Thg1l ENSRNOG00000005539 ENSRNOT00000007917 2 1 1 80 10 31049401 31049420 GGAAGAGTCGTGTTGTATCC 58 31048238 31049361 ATTATTGATGTGACAGTCTGCC 59 NA Rattus norvegicus 81 Adipor1 ENSRNOG00000004143 ENSRNOT00000005551 1 1 1 91 13 51259085 51259103 CTGTGATGTACATCACCGG 58 51259156 51259431 ATGAGACTGGAACCATATGTC 57 NA Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 1 1 1 80 1 227170047 227171030 GACTTTGAAGGTGAAGAGTCG 59 227169291 227169311 TGAGAGTCCTTATCCTTCACG 59 NA Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 2 1 1 80 1 227170050 227171033 GTCGACTTTGAAGGTGAAGAG 59 227169294 227169313 GAGTCCTTATCCTTCACGCT 59 NA Rattus norvegicus 81 Edaradd ENSRNOG00000002624 ENSRNOT00000003535 2 1 1 80 17 90813460 90814510 CTTTATCCTTTGCCATGTCAG 57 90820686 90820704 AAGTGACTGCATCACACTC 58 NA Rattus norvegicus 81 Otud1 ENSRNOG00000016950 ENSRNOT00000022734 3 1 1 60 17 86409344 86409362 TAGTTGGCTCAGCAATGGA 59 86409386 86409404 CTCTGGGTTAGGGTAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd4 ENSRNOG00000028470 ENSRNOT00000034886 1 1 1 80 1 162961265 162961286 TCTAATGTCAACTCTGTGACCA 59 162961325 162969386 GGCAGACATCATGAAGAAGAG 59 NA Rattus norvegicus 81 Chchd1 ENSRNOG00000009297 ENSRNOT00000012372 1 1 1 82 15 4026539 4026557 ATCCTGAAACCCAACAAGC 58 4026383 4026493 GTGATACAAGTTGCCTCGC 59 NA Rattus norvegicus 81 Tmod2 ENSRNOG00000010447 ENSRNOT00000014124 3 1 1 81 8 82522669 82522688 CAATTTGCTCAACAATCCGA 57 82520957 82522625 TTTGACGACATTCCTCACC 58 NA Rattus norvegicus 81 Vom1r67 ENSRNOG00000052591 ENSRNOT00000073670 1 1 1 60 4 87353339 87353362 TAATTCTAGGTCACAGACCTAAGC 60 87353379 87353399 TGAATGAAGGTCAGTTGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Leng9 ENSRNOG00000018621 ENSRNOT00000025138 3 1 1 63 1 73721752 73721770 CAGAACTGGGCTTGATTCG 59 73721857 73721875 TACAGTCTCTTTGGTTGGC 57 NA DesignNoJunction Rattus norvegicus 81 Disc1 ENSRNOG00000019779 ENSRNOT00000057945 2 1 1 80 19 58040654 58040672 TGCAGGTACTCTGTGAGTG 59 58040712 58057073 CATGAGATTCCTCTTTCCATAGG 59 NA Rattus norvegicus 81 Gpr25 ENSRNOG00000008603 ENSRNOT00000011368 1 1 1 71 13 53137220 53137238 TCCTGGAATTCTAGCTGGG 59 53137167 53137185 CTCTACTTGGTCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo4 ENSRNOG00000019553 ENSRNOT00000026552 2 1 1 80 15 34310411 34310804 AGACAAAGACTGCTATACCCA 59 34310351 34310369 AGCAGCATTTCGAACAACC 60 NA Rattus norvegicus 81 Wdr59 ENSRNOG00000018967 ENSRNOT00000047179 1 1 1 80 19 43694187 43695531 CGAGTTATCAGCGACTTGG 58 43694125 43694147 GATGTAGATATAGGTGTCCACAG 58 NA Rattus norvegicus 81 Ttc22 ENSRNOG00000007189 ENSRNOT00000009582 3 1 1 81 5 126241532 126241550 AGCTGACCTTGAGGAAGTG 59 126241591 126241921 GCCCATGTAATAGTAAACCTGAC 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000084246 2 1 5 60 20 4047189 4047207 ATCCCTCCAATGTTACCCA 58 4047231 4047249 AGCTCAGTAGTGGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dok1 ENSRNOG00000007412 ENSRNOT00000010020 1 1 1 80 4 113865517 113865536 CACAGAGTCAAATCCTGGAG 58 113865286 113865475 AGAACATTACCTTGTCTCGG 57 NA Rattus norvegicus 81 Dok1 ENSRNOG00000007412 ENSRNOT00000010020 3 1 1 80 4 113865519 113865537 GCACAGAGTCAAATCCTGG 59 113865287 113865476 GAACATTACCTTGTCTCGGC 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945,ENSRNOT00000083539 2 3 3 80 11 82765701 82768165 AAGTCTCAGGCTGAATGGA 58 82765639 82765660 TAATCGATGAATACAGGTCCCT 59 NA Rattus norvegicus 81 Blcap ENSRNOG00000024437 ENSRNOT00000033525 2 1 1 60 3 154041826 154041845 CATGTTCATGGGCTTCTACC 59 154041785 154041804 ACATATCGTGCAAGGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 2 2 2 80 14 37116690 37120552 CAACCTGCTTATTACACTTGTC 58 37120592 37120611 CTCTCATGAAACTCCAAGCT 58 NA Rattus norvegicus 81 Ghdc ENSRNOG00000018906 ENSRNOT00000025590 2 1 1 80 10 88676088 88676387 GGGAGAACACAGACATGAC 58 88676026 88676047 TCTCTTCACTTTCTTTCTGCTG 59 NA Rattus norvegicus 81 Psmc4 ENSRNOG00000018994 ENSRNOT00000025819 2 1 1 80 1 84978418 84978599 CCATCTGTCAGGAGAGTGG 59 84978356 84978376 TGTATGCTTTCTCGAAGTCCT 59 NA Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000077440 3 1 2 76 7 98709085 98709103 CTTGCTCAAAGAGCTGCAC 60 98607054 98607073 TTTGGGTGAAGTTCATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Dsel ENSRNOG00000032307 ENSRNOT00000043890 1 1 1 60 13 1945672 1945690 GGCTCTTTGGATGAAGGTG 59 1945630 1945653 CATACTGTGTAACTGATTTGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efna2 ENSRNOG00000016203 ENSRNOT00000021709 1 1 1 95 7 12383056 12383266 TCCAACCAATGAGACCCTG 59 12382979 12382997 GTAGTGAGGAAGAGGTGGC 60 NA Rattus norvegicus 81 Scn4b ENSRNOG00000026679 ENSRNOT00000030152 2 1 1 81 8 49449142 49449160 TTCTCCAGCTGTTATGGCT 59 49449205 49449759 CGTCGATGAGAATCCTGGA 59 NA Rattus norvegicus 81 Lsm7 ENSRNOG00000019552 ENSRNOT00000026551 2 1 1 86 7 11724986 11725525 CAAGATGGCGGACAAAGAG 59 11725574 11725593 TGGAACTTGACTCGAATGGT 59 NA InUTR Rattus norvegicus 81 Mcf2 ENSRNOG00000003435 ENSRNOT00000051550 1 1 1 80 X 143246002 143246021 TTCAACGGACTTTCACAGAC 59 143245070 143245959 AGCTCAGCATAACAACTGG 58 NA Rattus norvegicus 81 Cdk5rap1 ENSRNOG00000015696 ENSRNOT00000021418 1 1 1 80 3 149853572 149853590 TCTGTAAGCAGATCCACCT 58 149851766 149853531 CTTCTCTTGAATATCCTCTCCG 58 NA Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000054939 1 1 2 115 10 110139843 110144867 CTACCAAGGTGAAACCAGC 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Lrrc47 ENSRNOG00000024796 ENSRNOT00000034284 3 1 1 80 5 171305030 171305442 CTGCACAGATACCTTCACCT 60 171305484 171305503 GAAAGAGATCACGTCTCCCT 59 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330 3 1 2 82 9 113355586 113356148 GGGTAGCAATGAGTTCTTGG 59 113355523 113355543 TGGACATATGAAGCATGTTGC 59 NA Rattus norvegicus 81 Gng5 ENSRNOG00000038205 ENSRNOT00000058172 3 1 1 60 1 78546123 78546141 TTCTGTCTGCAGAATGCTC 58 78546162 78546183 GATTTGTACTTGAAGACACTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp639 ENSRNOG00000043053 ENSRNOT00000065518 3 1 1 98 2 118910629 118912492 CCTTCTCGATATTCAGATTCTTCTG 59 118912545 118912566 CTGTCTCATAGAGCAAACACTG 59 NA Rattus norvegicus 81 Thap2 ENSRNOG00000003993 ENSRNOT00000005443 1 1 1 89 7 58357905 58357923 ACAGGACAAACTCGAAGAC 57 58354954 58355575 CCTTGACTTGAGTTTCAAGC 57 NA Rattus norvegicus 81 RGD1305184 ENSRNOG00000038957 ENSRNOT00000045950 3 1 1 60 18 55667026 55667046 ATTACAGAAGCAGCCATTGAC 59 55667066 55667086 CTTCTAGCCAGACAAACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd1 ENSRNOG00000023688 ENSRNOT00000030893 2 1 1 60 17 11101747 11101768 TCCAGTATGAGAGGAAGATGAC 59 11101788 11101807 GTCCATGCTACGCTAATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Panx2 ENSRNOG00000055530 ENSRNOT00000089707 1 1 1 153 7 130043041 130049716 AGAACTTCGCAGAGGAACC 60 130049833 130049851 AACTTGTGCTCAAACAGCG 60 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459,ENSRNOT00000016376 2 2 2 80 1 114311448 114311466 GCTGAGGAGTATGAACGTG 58 114311510 114315478 GATCATGGCAATCACCTCC 58 NA Rattus norvegicus 81 Kcng2 ENSRNOG00000053640 ENSRNOT00000088054 1 1 1 225 18 76878921 76878939 CTTTCATGGAGCTTCTGGC 59 76836973 76836991 CGTTGATTATGACGTGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr821 ENSRNOG00000046688 ENSRNOT00000044838 1 1 1 60 4 72670879 72670897 CTCCTTGTGGTGATGTCCT 59 72670921 72670939 CAGAGTAGTGTAGCGGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 1 1 1 80 8 50516389 50517125 GATGAGGAAGATGAAGAATGTGG 59 50517163 50517183 GGAGTTTAAATGCTGGCTACC 59 NA Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 2 1 1 80 8 50516390 50517125 ATGAGGAAGATGAAGAATGTGG 58 50517166 50517184 GGGAGTTTAAATGCTGGCT 58 NA Rattus norvegicus 81 AABR07034742.1 ENSRNOG00000001893 ENSRNOT00000002599 1 1 1 60 11 86421671 86421689 CTACCTTCCTCTCACTGCC 59 86421712 86421731 TGAAAGACCACCATGTAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 2 3 3 80 10 35875730 35875749 GGGTATAACAGCATTGGCAG 59 35875791 35875901 ATCATAGCCTCCATAGCCTC 59 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 1 2 2 80 5 59082272 59082291 GGAAGAAGGATTCATGGCTG 59 59082334 59082537 TATACAGATGGAGGCTGCG 59 NA Rattus norvegicus 81 Fam71f2 ENSRNOG00000039383 ENSRNOT00000060353 1 1 1 80 4 56556712 56556731 TGTCAACTGATCCATTCTCC 57 56556771 56560465 CTTAGTGACCTGGATAAAGGTG 58 NA Rattus norvegicus 81 Rabgef1 ENSRNOG00000000895 ENSRNOT00000001196 2 1 1 80 12 29968775 29968796 GGAACAGTCAGAATGTACTCAG 59 29967324 29968734 TTCTCTGGAGGCACTTTCC 59 NA Rattus norvegicus 81 Rab27a ENSRNOG00000052499 ENSRNOT00000083957 3 1 1 80 8 79765847 79774081 TCGCAGAGAAGTATGGAATCC 60 79774122 79774141 GGAGCATCTCAATTGCTTGG 60 NA Rattus norvegicus 81 Klre1 ENSRNOG00000058714 ENSRNOT00000084823 1 1 1 80 4 163352118 163352784 ATATTCATCAGGAAGGACTCCA 59 163352823 163352843 CCTTGGAGAAGTAGTAACAGC 58 NA Rattus norvegicus 81 Vom1r68 ENSRNOG00000051513 ENSRNOT00000074184 2 1 1 60 4 87441262 87441281 CTCTATCTGTACCACCTGCC 59 87441304 87441322 GGTATTGGGACTGATCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dot1l ENSRNOG00000032546 ENSRNOT00000051467 2 1 1 80 7 11801206 11801226 CAGAATCGTATCCTCAAAGCC 59 11800685 11801164 ATGATGGTGCCAATGTCAC 59 NA Rattus norvegicus 81 Cabyr ENSRNOG00000047436 ENSRNOT00000071392 1 1 1 84 18 4086404 4086513 TAGAGAAGGGAATTCGTCTCTG 59 4091685 4091703 CACTCCTTCTGCCCATCTC 60 NA Rattus norvegicus 81 Rn60_X_0743.2 ENSRNOG00000051181 ENSRNOT00000076218 1 1 1 60 X 73481460 73481481 TATGACAGCTATAACAACGGAG 58 73481502 73481520 AATTGCTTCCACTACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789,ENSRNOT00000064557 1 2 2 97 3 8958396 8961468 ATACCCTGCAGGTGATCTG 59 8961526 8961547 GCTTGAATATGATGAGGGTCAC 59 NA Rattus norvegicus 81 rno-mir-542-1 ENSRNOG00000046738 ENSRNOT00000074302 1 1 1 60 X 158158901 158158922 GATCATCATGTCACGAGATACC 59 158158938 158158961 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfn4 ENSRNOG00000050386 ENSRNOT00000074570 1 1 1 80 6 30031723 30031741 TATCTTCTGGTGGCAACCT 58 30028516 30031681 TAGATACTCTCCCAGCTTCTC 58 NA Rattus norvegicus 81 RGD1560436 ENSRNOG00000025065 ENSRNOT00000038013 2 1 1 80 5 142938617 142938773 ACCCTTGTGTCAGATATCCTG 59 142938813 142938833 CTCCAGATCTCCAGATACTGC 60 NA Rattus norvegicus 81 Gpx1 ENSRNOG00000048812 ENSRNOT00000073247 3 1 1 85 8 117117733 117117968 GGACATCAGGAGAATGGCA 60 117118017 117118035 GTAAAGTTGGGCTCGAACC 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 1 1 1 80 1 114773045 114780936 GAGCTACAAAGAAAGCATAGGA 58 114780975 114780995 CATGGAGATGACAAATCCCAG 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 2 1 1 80 1 114863777 114863798 TTGTCCTAATAGTGTGGGTCTC 59 114863837 114872339 GGACAGGAATCATTGTAGCAG 59 NA Rattus norvegicus 81 RGD1359108 ENSRNOG00000009478 ENSRNOT00000013181 3 1 1 80 5 50681150 50681168 GGTCATCCCTGTGATGGAG 60 50680593 50681111 AGTACTGTATCAGCTATATCGAGG 59 NA Rattus norvegicus 81 Cdca8 ENSRNOG00000031431 ENSRNOT00000048293 3 1 1 81 5 142931141 142932988 CTTGACTACTTTGCCCTAGG 58 142926243 142926264 TGTTTATCTCTGTGATGTCTCG 58 NA Rattus norvegicus 81 Cela1 ENSRNOG00000004725 ENSRNOT00000006351 1 1 1 80 7 142317874 142317894 GGACTTTCCGGAAACTAATGC 60 142315973 142317833 TGGAGGGAAATCTGAGATGG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808,ENSRNOT00000072263 1 4 4 80 5 127607746 127607766 TATAAGTCAGAGCCTGGTACG 59 127607808 127610609 CAGCATGATGCCCATAGTG 59 NA Rattus norvegicus 81 Ndufb10 ENSRNOG00000014568 ENSRNOT00000019624 1 1 1 80 10 14090730 14090749 CATCACGGAATGCAAAGAGG 60 14090550 14090687 TGGTCCACTTTGAAGTCCC 60 NA Rattus norvegicus 81 Chd1l ENSRNOG00000017669 ENSRNOT00000043937 1 1 1 80 2 199727492 199733611 CAAGAGGAAGGAAGTGAACTG 59 199726866 199726887 CTCCTTAGAATAGTCTCTGCCT 59 NA Rattus norvegicus 81 AABR07058091.2 ENSRNOG00000061264 ENSRNOT00000074953 1 1 1 80 7 99758043 99758483 ACCTAGTTCAATGGGAGGG 58 99757981 99757999 TCCGGTCTGTTTCCTTCAG 59 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 3 3 3 80 20 34588141 34588162 ATGTCAAGACAAAGAAGTGCAG 60 34585738 34588101 TGTTGTAAGCTCTGAACGGA 59 NA Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 2 1 1 60 3 148104456 148104474 TGGATTCTGCTCATTGTGG 58 148103789 148104432 ATTCAGTGCTCCCTGATGG 60 NA DesignRelaxed Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 3 1 1 61 3 148104453 148104471 ATTCTGCTCATTGTGGCTC 58 148103785 148104428 TTGAATTCAGTGCTCCCTG 58 NA DesignRelaxed Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681,ENSRNOT00000087680 2 2 2 80 1 276296972 276301983 GAAGAGAAGGCTAAAGATCGGA 60 276296913 276296936 CCATTTACTTCCCATATCGTAAGG 59 NA Rattus norvegicus 81 Rnf138 ENSRNOG00000015645 ENSRNOT00000021061 3 1 1 80 18 15153668 15153688 CACCAGACAACGTTTATTGGA 59 15149032 15153630 TCCTCATCTAGCTGAAGATTCAC 60 NA Rattus norvegicus 81 Hs6st3 ENSRNOG00000048243 ENSRNOT00000071685 3 1 1 60 15 105253498 105253517 ACTACATCACAATGTTGCGG 59 105253538 105253558 TGAACGTGTTTCCATTCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000016881 2 1 2 80 1 267505403 267506312 GCTGAGGAAGAAGGAAATCAG 59 267506353 267506372 AGGAATGTCAGGTGAAGTGG 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 3 1 1 60 1 88621376 88621395 ACAACATCCTGTACAGACTG 57 88621417 88621831 TATAAACAGTAGGCAGTGCC 57 NA DesignNoJunction Rattus norvegicus 81 Npbwr1 ENSRNOG00000007640 ENSRNOT00000010032 2 1 1 60 5 13380643 13380664 CTTACTTCATCACCAGTCTGAG 58 13380685 13380703 AAGGCATAGAGGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 1 3 3 80 12 30069029 30069050 GATATGATCCATACGCCAATCC 59 30051549 30068989 CTTTATGGACCCTCCTGGTG 60 NA Rattus norvegicus 81 Ptpmt1 ENSRNOG00000009723 ENSRNOT00000013584 3 1 1 95 3 79742857 79742875 CTGGTACTGGACGAGAACG 60 79739408 79742801 CACATTCTTCCATTCCTTCGAG 60 NA Rattus norvegicus 81 RGD1564827 ENSRNOG00000017806 ENSRNOT00000039754 3 1 1 80 17 4119586 4120632 TGTCAAGAACAGCATGGGA 59 4119524 4119543 ATTCCACAGTGGTTACCCTG 60 NA Rattus norvegicus 81 Il12rb2 ENSRNOG00000007270 ENSRNOT00000009883 1 1 1 80 4 98114095 98114946 ACACTTTACAGTTAACTGGACC 58 98114036 98114055 GACGACTACAATTCTGACGA 58 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 2 2 2 80 7 50173798 50218847 AAAGAAGAGCAAGAGAAACTGG 59 50173739 50173759 AATGACAACAGTCAGTTTGCC 60 NA Rattus norvegicus 81 Elf3 ENSRNOG00000006330 ENSRNOT00000008754 2 1 1 82 13 52086658 52086676 GTTCCCACTCCTCTGACTC 59 52086440 52086612 AGGAAAGCCATCTCTAGGG 58 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 1 2 2 80 15 103319961 103321128 AATCAAGAAGACAGTTGAGTGG 59 103319902 103319921 ACTGGAAAGGGTTCTAATGC 58 NA Rattus norvegicus 81 Zfp866 ENSRNOG00000042580 ENSRNOT00000034415 1 1 1 80 16 21422365 21422784 CCTGGGAGAAATATGAGAGGT 59 21422824 21422844 TGTCAGAGTTTCTTCAACCTG 58 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 3 1 1 72 7 12419019 12420968 AGTTTGACTGAGACCCAGC 60 12418965 12418983 TGTATTTCCGGAAGCCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC682646 ENSRNOG00000049837 ENSRNOT00000050916 1 1 1 80 8 44499712 44501128 GGAGAAACATTGGTTCCCT 57 44499650 44499668 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 Anapc4 ENSRNOG00000004130 ENSRNOT00000006093 3 1 1 80 14 60474621 60475482 AAGTCAGAAGAAGCACTTACAG 59 60474562 60474582 TGGAGTCCTTAAGGATGACTG 59 NA Rattus norvegicus 81 Olr737 ENSRNOG00000052463 ENSRNOT00000088256 3 1 1 60 3 79050358 79050376 TGGTTGTCTTGTTCTTCGG 58 79050316 79050334 GTGTAAGTGGAAGCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015180.1 ENSRNOG00000026134 ENSRNOT00000031524 1 1 1 80 14 48270918 48270936 CCCACGGTTACATTACACC 58 48270854 48270875 TTACTTCTCCACGACTGTCC 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000004236,ENSRNOT00000085582,ENSRNOT00000004295 3 4 6 80 10 53751535 53751780 CTTCAAGCAGAGATACAAGGT 58 53751822 53751840 TTCTCAGAAGCCTTCTTGC 58 NA Rattus norvegicus 81 Hhipl1 ENSRNOG00000028390 ENSRNOT00000034883 2 1 1 81 6 132225002 132225020 TCCGTATCAGCGAGTTCAG 59 132225061 132228819 TCAATCTCCAGGATTATCCTCTC 59 NA Rattus norvegicus 81 Efcab1 ENSRNOG00000050091 ENSRNOT00000071986 2 1 1 80 11 90226239 90226920 TGATCATGGACAGAGTATTTCG 58 90226180 90226200 ATAATCCATGAACCCACTCTG 58 NA Rattus norvegicus 81 Mob3b ENSRNOG00000009453 ENSRNOT00000012519 2 1 1 85 5 50472702 50472721 TCAACACCTGCTACAAACAC 59 50439966 50472654 CATCTCTTTCAAGGGCTCC 58 NA Rattus norvegicus 81 Celsr1 ENSRNOG00000021285 ENSRNOT00000036025 3 1 1 80 7 126813260 126817503 CTGTGAACAAGCTATGCCA 58 126813198 126813216 GAGATGGTGATGTCGAGGT 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887 2 2 3 104 4 161953904 161953923 AATAAGCAGCTCATTCTGGA 57 161950723 161953840 CCAGTGATGCTTAATACATCAG 57 NA Rattus norvegicus 81 Rn60_X_0744.1 ENSRNOG00000048213 ENSRNOT00000076109 2 1 1 60 X 73581611 73581629 CTCCTACATGTTGGTGGAC 58 73581653 73581671 GAGGAAAGTCACCTTGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1639 ENSRNOG00000050975 ENSRNOT00000044250 2 1 1 60 15 28785522 28785540 TCTGAAACTAGCCTGTGCC 60 28785480 28785498 TCCGATGTCCACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfn2 ENSRNOG00000046447 ENSRNOT00000065985 3 1 1 80 5 164581682 164585470 CTTCCTTGAAGACACCCAC 58 164581620 164581638 AGGTACCCTTTGACATCCA 58 NA Rattus norvegicus 81 Trappc12 ENSRNOG00000009039 ENSRNOT00000029859 2 1 1 80 6 47961295 47961315 AGTAATCAAGTACTACCCGGA 58 47956849 47961255 TTTATGTCTCCAATCTGGAGG 57 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 1 4 7 88 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714910 83716149 ATGTCATAGAGCTGCCCTG 59 NA Rattus norvegicus 81 Dhcr24 ENSRNOG00000006787 ENSRNOT00000009402 2 1 1 80 5 126168133 126173509 ACACCAAGAAACAGATTGTGC 60 126173551 126173569 TCCAGCCAATGGAGTTCAG 60 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577,ENSRNOT00000083395 3 2 2 80 8 13584789 13605437 AGATCTCCATCGGTACCCA 60 13584727 13584745 AGTAAGAGTCCACGAAGGC 59 NA Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 2 1 1 62 3 176281596 176281615 GAACTACATCCTCATGCAGG 58 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr357 ENSRNOG00000053559 ENSRNOT00000073539 1 1 1 60 1 230056852 230056874 TTATCTTGGACTCCAGACTACAC 59 230056893 230056912 GCAAAGGAGAGGTTACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 1 1 1 80 7 127189312 127223131 AGTACACAGACCAGGAGGA 59 127223174 127223193 TATCAGCCTCAATGTTGCGA 60 NA Rattus norvegicus 81 Rragd ENSRNOG00000007331 ENSRNOT00000068028 3 1 1 80 5 48240188 48245248 GACTCCCAGGATGACTATATGG 59 48245285 48245307 GATATCAGTGTTCACCTTGTAGG 59 NA Rattus norvegicus 81 Stau1 ENSRNOG00000007781 ENSRNOT00000010633 2 1 1 80 3 163717760 163717778 CCTGTGAAACATGATGCCA 59 163714675 163717718 TCCATTTACCTCTAGCCTCTC 59 NA Rattus norvegicus 81 LOC100909538 ENSRNOG00000048428 ENSRNOT00000074545 1 1 1 62 15 2733221 2733239 CAGGGTGGATGAAGTCTGG 60 2734068 2734086 AATCGGTTATTTGCCGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382,ENSRNOT00000082316,ENSRNOT00000084218 1 3 3 83 X 10141561 10141579 TGGTGTTGGGAGAAGACAC 60 10141626 10144017 CTGGTTGTATGCGGAATGG 59 NA Rattus norvegicus 81 Smarcad1 ENSRNOG00000006391 ENSRNOT00000008585 2 1 1 80 4 95936297 95936315 TCCTTTACTACACCGCCAG 59 95936358 95937546 CAATGCGTAGGTTCCTTCAG 59 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 2 2 2 119 1 197999414 197999730 GAGCACTGGATTCCTTCAG 58 197999812 197999831 CTACAACCTTCCCTTCAGTC 58 NA Rattus norvegicus 81 Pawr ENSRNOG00000005917 ENSRNOT00000008222 3 1 1 81 7 51352559 51352578 AGATCGAGAAGAGGAAGCTG 59 51303197 51352516 TACTCATCTAAGCACTCCGC 59 NA Rattus norvegicus 81 LOC691354 ENSRNOG00000023452 ENSRNOT00000031978 3 1 1 80 5 165465122 165465140 GTGTTCCCATGGATCCTCC 60 165465183 165467614 CTCGACCTTCTCTGTCAGAG 59 NA Rattus norvegicus 81 Cts8l1 ENSRNOG00000048693 ENSRNOT00000073585 1 1 1 80 17 4063825 4063846 CATAACAGGGAGAATTCCTTGG 59 4063883 4063999 GAATTCTTCATCAGTCAGGTCAG 59 NA Rattus norvegicus 81 Cdk2 ENSRNOG00000006469 ENSRNOT00000031963 3 1 1 81 7 3126195 3126468 GCTTGTTATCTCAAATGCTGC 59 3126134 3126152 TCCTGGAAGAAAGGGTGAG 59 NA Rattus norvegicus 81 Ankrd54 ENSRNOG00000010821 ENSRNOT00000014413 2 1 1 80 7 120287062 120287082 AAGTCGAAACTGAACATCCTG 59 120286172 120287020 GTGGATGATCTGCTTCACC 58 NA Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 3 1 1 60 3 73391029 73391050 ATTCATGTATCTCAGAAGGCCA 59 73391071 73391089 TACAGCCACCATCTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC299277 ENSRNOG00000037743 ENSRNOT00000057298 1 1 1 84 6 127882818 127882836 TCATGGACGTGTTCAACAC 58 127872847 127882772 GTGTTGTGGATCATCTGAGAG 59 NA Rattus norvegicus 81 LOC299277 ENSRNOG00000037743 ENSRNOT00000057298 3 1 1 86 6 127882818 127882836 TCATGGACGTGTTCAACAC 58 127872845 127882770 CAGTGTTGTGGATCATCTGAG 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600,ENSRNOT00000015426 2 2 2 80 4 9170099 9170120 TGGATAAAGCTGACTATCTGAG 57 9170160 9174026 TTCTGTCAGTCAACTCTTGC 58 NA Rattus norvegicus 81 Sod3 ENSRNOG00000003869 ENSRNOT00000005155 1 1 1 86 14 60960193 60964216 CTTGTCAGGTGTGGAACCT 60 60960125 60960143 CATGGTCCAGGTGACAGAG 60 NA InUTR Rattus norvegicus 81 Olr1638 ENSRNOG00000011615 ENSRNOT00000015439 2 1 1 60 15 28446600 28446618 CACACCCATGTATTCCCTC 58 28446558 28446579 CGTAGAAGAGTAGCAGAAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meiob ENSRNOG00000014711 ENSRNOT00000060551 2 1 1 81 10 14194180 14194200 CAAATTTCAGAACTGCATGGC 59 14194239 14197295 GATATTGGCTTCTGGTGTATCTG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245,ENSRNOT00000041577 3 2 2 80 8 22620401 22620419 TCCCTCGGAGAATATGTGG 58 22620463 22620586 TAGGCAGTAGGCATTCCAG 59 NA Rattus norvegicus 81 LOC100909747 ENSRNOG00000048028 ENSRNOT00000071957 1 1 1 60 1 76651883 76651901 CCACGAGGAAGACTTTGAG 58 76651841 76651860 TTGATACCACTGGATAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam196b ENSRNOG00000032329 ENSRNOT00000050610 3 1 1 60 10 19368124 19368142 TTCCTCCATTCCAAGGCAG 60 19368165 19368184 ATTACTGGCACCTATCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl27 ENSRNOG00000039530 ENSRNOT00000060594 2 1 1 81 5 58159476 58159495 GACTACTGAGGAGGATCGTC 59 58159239 58159432 GTCAGGTGAAGCACAACAG 59 NA Rattus norvegicus 81 Prpf38a ENSRNOG00000009451 ENSRNOT00000012635 2 1 1 80 5 128181763 128183014 CAGAAATGGAGAGTTTGAACTG 58 128181704 128181723 ATGATATCACAGACTCGCTC 57 NA Rattus norvegicus 81 Tbcc ENSRNOG00000048291 ENSRNOT00000073079 3 1 1 60 9 16405418 16405437 CTCCGGTTTAGATAGGAGCA 59 16405377 16405395 GGCTAGCCAATTGAAATCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305350 ENSRNOG00000007968 ENSRNOT00000010558 2 1 1 84 5 164755754 164755775 CCACCTCTTCCTCTTTAAACTC 59 164755820 164756987 ACTGGGATCTTCCTTGCTC 59 NA Rattus norvegicus 81 Olr1002 ENSRNOG00000046978 ENSRNOT00000050967 2 1 1 60 7 6216513 6216534 TCTTAAACCATCAGTCAAGCAG 59 6216552 6216573 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1079 ENSRNOG00000049781 ENSRNOT00000073334 2 1 1 60 7 13488426 13488446 CAGTTCAAGGGAAGTACAAGG 59 13488386 13488405 AAGGAGACAATGGAAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063,ENSRNOT00000073255 1 3 3 80 1 190011036 190011054 ATGTCAAAGGATCTGAGCG 58 190011097 190011709 TATCACCACCTTAGTGTCCC 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063,ENSRNOT00000073255 2 3 3 80 1 190011039 190011057 TCAAAGGATCTGAGCGGAG 59 190011098 190011712 AAGTATCACCACCTTAGTGTCC 60 NA Rattus norvegicus 81 Fzd5 ENSRNOG00000014678 ENSRNOT00000019698 3 1 1 60 9 71444612 71444633 CCACATTCACTATGAGACTACC 58 71444573 71444595 GTAGACTAAGAGGAAGACGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1393 ENSRNOG00000047749 ENSRNOT00000049754 3 1 1 60 10 34663037 34663060 CAATCCTTTGATCTATACCCTGAG 59 34663079 34663097 TAGCATCTTCCACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gbp3 ENSRNOG00000036885 ENSRNOT00000040856 3 1 1 80 2 248481000 248481437 GGACCAGCTGCAATATGTG 59 248480938 248480956 GAAGCCTCAACTCCATTGC 59 NA Rattus norvegicus 81 Mthfd2 ENSRNOG00000010833 ENSRNOT00000014603 2 1 1 80 4 115007707 115007725 CACACTCCCAAAGAACAGC 59 115007348 115007664 GATGAGGTTTGGAATGCCAG 59 NA Rattus norvegicus 81 Stat5a ENSRNOG00000019496 ENSRNOT00000026662 1 1 1 80 10 88781463 88781560 CCCACTTCAGAAACATGTCAC 60 88781602 88781620 TGAACTTCTCCTCCGTCAC 59 NA Rattus norvegicus 81 Stk40 ENSRNOG00000025679 ENSRNOT00000035597 3 1 1 82 5 144146981 144147350 CATTGCATCTTGGCAGTCC 60 144147396 144147414 CAGAGCTGCTCATTTGGTC 59 NA Rattus norvegicus 81 Ccdc8 ENSRNOG00000027936 ENSRNOT00000029810 2 1 1 80 1 78935071 78935092 GCAGTTAATCCAAGAACAGAGG 59 78935133 78935181 CTTTGGACTAGCCTCTGCT 59 NA Rattus norvegicus 81 Rbm15b ENSRNOG00000014161 ENSRNOT00000018995 2 1 1 60 8 115618631 115618650 GACTTCTCACAGCAGTACCT 59 115618590 115618609 GTTCTTCCTCTAACTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr209 ENSRNOG00000045692 ENSRNOT00000041335 2 1 1 60 1 170763331 170763350 GGTTCTTTCATCTTGGTCGG 59 170763290 170763308 CAGCACAGAGCATTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588,ENSRNOT00000044893 1 2 2 80 7 117659245 117659263 TTGGCTTCTTCATCTCCCT 58 117659307 117659445 CATACTTCGGGCTGTTCTC 58 NA Rattus norvegicus 81 Med18 ENSRNOG00000047303 ENSRNOT00000072028 1 1 1 90 5 150653139 150653158 AGTCACCATGATGCCAGTC 60 150650348 150650368 CAGACTTTCCAAACTGTGGTC 60 NA Rattus norvegicus 81 Afmid ENSRNOG00000050205 ENSRNOT00000073809 2 1 1 80 10 106837186 106837204 TTTCCGGATGAGGATTCCA 58 106837330 106839295 GTCATCTTTACTTCCACTCTGC 59 NA Rattus norvegicus 81 Nsd1 ENSRNOG00000016680 ENSRNOT00000060928 3 1 1 80 17 9855237 9855256 CAGAAGTGGTCTGTGAATGG 59 9851612 9855196 GAAGGTAAGTTCAGTTCCTGC 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 2 2 2 80 8 114604196 114606644 GCTCTGATAAAGGATGTGAAGAC 59 114604138 114604159 AATTTGTAAGCCCTATGCTTCC 59 NA Rattus norvegicus 81 Klrc1 ENSRNOG00000055196 ENSRNOT00000085671 3 1 1 82 4 163458988 163459008 CTGGATTCTTTCGAAAGAGCA 59 163458621 163458947 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 AABR07025743.1 ENSRNOG00000033638 ENSRNOT00000041833 2 1 1 60 16 47756692 47756710 TCCTCAGAAGATGGGAGAG 58 47756648 47756668 CACATGAAGTCTCTGATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Spata9 ENSRNOG00000012770 ENSRNOT00000017068 1 1 1 93 2 2729974 2730159 CTTCTCTGGAAGATTTGAGGG 58 2730209 2730232 CTGTGATAATCTTAGGATGGTAGG 58 NA Rattus norvegicus 81 Spata9 ENSRNOG00000012770 ENSRNOT00000017068 3 1 1 94 2 2729973 2730159 ACTTCTCTGGAAGATTTGAGGG 60 2730208 2730232 CTGTGATAATCTTAGGATGGTAGGA 60 NA Rattus norvegicus 81 Cramp1l ENSRNOG00000024635 ENSRNOT00000022050 1 1 1 80 10 14345782 14345800 TTACAACCACGGAACAACC 58 14344791 14345738 CAGCTCCACAATCATCCTG 58 NA Rattus norvegicus 81 AABR07015559.1 ENSRNOG00000055015 ENSRNOT00000086658 2 1 1 80 14 63415748 63415766 TCTGTGGAGTTCTCTGAGC 59 63415807 63439437 AGATCTTTACCAATCCTCTCCT 58 NA Rattus norvegicus 81 AC115420.2 ENSRNOG00000047447 ENSRNOT00000071027 3 1 1 62 4 157374858 157374876 GAAACCGAAGTGAGACGGA 60 157374902 157374920 TACCCACACTAGACCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glyr1 ENSRNOG00000003065 ENSRNOT00000004159 2 1 1 80 10 10739539 10744075 AAAGGATGAGAAGGACCTCAC 60 10744114 10744135 CATTTAAATGCAGCCATTGGTC 59 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 2 2 2 80 18 16541462 16541480 ATTCTGTGAGTGAGCCCAG 59 16539870 16541419 TTGTTGCATTGAAGCACTCC 60 NA Rattus norvegicus 81 AC118496.1 ENSRNOG00000054817 ENSRNOT00000087847 1 1 1 80 6 103452388 103452408 CCAGTGAAGAACTCTCACCT 59 103452450 103452469 CTGAGGATTCTTCCTTCCCA 59 NA Rattus norvegicus 81 LOC100364433 ENSRNOG00000047993 ENSRNOT00000074329 1 1 1 60 7 6625583 6625602 TGCTAGTCAGAGGTCAAAGG 59 6625542 6625563 GATGGAGATGACAATCATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu3 ENSRNOG00000018106 ENSRNOT00000024420 1 1 1 80 1 164810065 164814475 GTGAGCTGAGAAGTCATGG 58 164810003 164810023 AATCCTGTTCTGTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Sp1 ENSRNOG00000014084 ENSRNOT00000019403 1 1 1 80 7 144017447 144017465 GGGTACTTCAGGGATCCAG 59 144017509 144032529 TGAGCTCCATGATCACCTG 59 NA Rattus norvegicus 81 Coasy ENSRNOG00000019918 ENSRNOT00000027061 2 1 1 80 10 88995869 88995887 CTATGCTGCTTGAAGCTGG 59 88995931 88996062 GACGTACAGCCTCAGACTC 60 NA Rattus norvegicus 81 Olr984 ENSRNOG00000049589 ENSRNOT00000047489 1 1 1 60 7 4292661 4292682 GAATTCCATCTACTAGCCAGAG 58 4292622 4292642 ACAATCATGTGAGAGGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307621 ENSRNOG00000023230 ENSRNOT00000034756 2 1 1 80 6 86656878 86658240 GGAAATCTGAAGGTCTCGC 58 86658945 86658963 ATAAAGTGGCACCTTCCAG 57 NA Rattus norvegicus 81 Riok2 ENSRNOG00000012692 ENSRNOT00000017165 2 1 1 82 1 59137129 59137147 AGTTCCAAAGCCAGTTGAC 58 59137191 59138260 CATGATGTATCTGACACAGGG 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895,ENSRNOT00000086978 3 3 4 64 20 3827130 3827148 TTCCTCCCTACCTCTGGAC 60 3827348 3827367 CAATGAGGAGCTCATTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Trim72 ENSRNOG00000022099 ENSRNOT00000029994 3 1 1 80 1 199454317 199454770 TTCCTCATGAAATTCTGCCT 57 199455622 199455640 GATATCTAGCCTTGCTGGG 57 NA Rattus norvegicus 81 Tmem88b ENSRNOG00000036869 ENSRNOT00000055343 2 1 1 90 5 173231747 173232659 CACTCGAGGGTTCATCCAG 60 173231675 173231696 AGAGGAATCCGAACACTATGAG 60 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 2 2 2 80 16 39909392 39912130 GATTCCAATGTGCTTCCCA 58 39914067 39914087 TGTACTTCCCTATCAGGAGTC 58 NA Rattus norvegicus 81 Echdc2 ENSRNOG00000029333 ENSRNOT00000047653 1 1 1 80 5 127788495 127789056 CTATGCCCAGAACATCCCA 59 127789100 127789118 CCCACAAATTTGGGAGGTC 59 NA Rattus norvegicus 81 AC109901.1 ENSRNOG00000053208 ENSRNOT00000045807 3 1 1 80 11 85633272 85633413 CCTTCATCACTTAACAGGGTC 59 85633454 85633473 ACTGTGATTCCTAGAGACGT 58 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 1 2 2 80 7 142454962 142457085 AGCGGTCTTAAAGTTTATCCCA 60 142457122 142457144 TGGATTCCTTGTAGAGAAGAGAC 59 NA Rattus norvegicus 81 Olr1540 ENSRNOG00000049405 ENSRNOT00000060892 3 1 1 60 11 43330462 43330484 CTTCTCTTCATGTATCTGCTTCC 59 43330503 43330522 AGTCCATCATGTCTTCATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 2 1 1 60 6 140980171 140980189 AGTTGTTGCTAAACTGGGT 57 140980005 140980149 TTCACCTCACACTGAATACCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC691895 ENSRNOG00000045864 ENSRNOT00000046759 3 1 1 60 X 34162658 34162676 TCAAGCGATTCTTCCTGAG 57 34162616 34162636 AACACAAACATCTCCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 2 2 2 153 4 6947747 6947875 AACTGTCTCCAGGTACACG 59 6947992 6948010 CCACCTTGTTGCTGAAGAG 59 NA Rattus norvegicus 81 Fgd5 ENSRNOG00000010213 ENSRNOT00000051022 1 1 1 80 4 123952348 123953615 CTGTCTGCAAGCTCATGTG 59 123953658 123953677 CTGAGTCTTGTAGTCCTCCG 59 NA Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834 3 1 2 80 1 264097295 264097315 AGCCATCGAACCTATAAAGCA 60 264097357 264098594 CACATCGTTCTGGAAAGCC 59 NA Rattus norvegicus 81 Cyp4a8 ENSRNOG00000008842 ENSRNOT00000012448 3 1 1 80 5 133982985 133983004 CCCTTATCGATTTGCACCAG 59 133980046 133982942 CCAATGCAGTTCCTTGCTC 60 NA Rattus norvegicus 81 Fam219a ENSRNOG00000039559 ENSRNOT00000060642 2 1 1 82 5 57900743 57900764 CCTAATAAAGGCTACTCTTCGC 59 57900042 57900700 AAATCGTCATCGCTGTCTG 58 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 1 1 1 80 X 11145602 11145623 TGTCAAATCATTCGACACATCC 59 11138096 11145562 TAGGGACTTTGGGTGTTCTC 59 NA Rattus norvegicus 81 AABR07029056.1 ENSRNOG00000048608 ENSRNOT00000074890 1 1 1 80 10 4448231 4448999 GATCAGAGTGTCTTTGCCT 57 4449040 4449061 GGTGAATCACATTCATCTTTGG 58 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653,ENSRNOT00000077386 1 2 2 82 10 16774568 16774591 ACCATCTGGTATCTGAAGTATCAC 60 16770296 16774527 GGCTTCTAGCTGTGACCTC 60 NA InUTR Rattus norvegicus 81 Elp2 ENSRNOG00000015301 ENSRNOT00000020601 1 1 1 80 18 16556761 16557413 CAACCTTCGGTAGAGACCT 58 16557454 16557475 TCGGTTTCATATACAGTCTCCA 59 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337,ENSRNOT00000087621 3 2 2 80 X 29462503 29465920 GTGCCTAGATATCGATGAATGTG 59 29465957 29465978 TAGCTTCCAAATGTGTTCACAC 60 NA Rattus norvegicus 81 Xpot ENSRNOG00000007088 ENSRNOT00000009645 1 1 1 80 7 63708722 63708741 TCTTTGAAACTGTCGTTCGC 60 63708215 63708684 CTAAGAAAGCCATTAGTACACAGG 59 NA Rattus norvegicus 81 Ubqln1 ENSRNOG00000019282 ENSRNOT00000061233 1 1 1 80 17 6860352 6862844 TCCTTTGGTTTAGGTGGAC 57 6862886 6862906 CTGTAGTTCAGAGAAGTTGGT 57 NA Rattus norvegicus 81 Epx ENSRNOG00000008707 ENSRNOT00000011735 2 1 1 80 10 75161599 75162127 GACGGAGACAGATTCTGGT 59 75161537 75161558 AGATAAAGAAATTCGCCTCAGG 59 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 3 2 2 98 7 12629115 12629585 CACCGATGTTGACATCGAC 59 12629647 12629665 CATTGTAGCAACTGCTGCA 59 NA Rattus norvegicus 81 LOC100912849 ENSRNOG00000015386 ENSRNOT00000020640 3 1 1 81 9 15585892 15585910 TTCAAGAGCCCAGAAGAGC 60 15585950 15603779 GATTAAGGATTTCTGTGACTCCTG 59 NA Rattus norvegicus 81 AABR07065693.1 ENSRNOG00000045786 ENSRNOT00000070810 2 1 1 119 6 139412494 139412512 CTCTCAAATCCCGACTGAG 57 139412595 139412707 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 Cfap70 ENSRNOG00000007046 ENSRNOT00000035345 2 1 1 80 15 4289493 4289511 CAACATTGACCTCAACCCA 58 4289555 4297578 ACTTCAGTCACCGTTAGGA 58 NA Rattus norvegicus 81 Zdhhc19 ENSRNOG00000025055 ENSRNOT00000033026 1 1 1 80 11 71512701 71513023 GGGTCCCAATTACATGTCTG 58 71512640 71512659 GGGTGTTTAGTCTTCTCCTG 58 NA Rattus norvegicus 81 Crispld1 ENSRNOG00000017773 ENSRNOT00000024199 1 1 1 80 5 689516 689534 CCATGACACTCATGTTCGG 59 689077 689473 ACAATCTGAGACATCTGCTG 58 NA Rattus norvegicus 81 Trpm4 ENSRNOG00000020714 ENSRNOT00000041513 2 1 1 80 1 101323161 101323179 AGAGAAATACACGGAGCCC 59 101322866 101323120 AGATCTTAGGGATCCAACTCTG 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 3 1 1 80 9 15322284 15326862 AGTGTAACAGCAAACGACG 59 15322222 15322245 GTCTGTAGATCATTAACTGCTTCC 59 NA Rattus norvegicus 81 Clec4f ENSRNOG00000013137 ENSRNOT00000017643 2 1 1 80 4 115330663 115330682 GGAGACAGAAGCAGAATGAG 58 115329285 115330622 GGGAACAATTGTCAGATCCAG 59 NA Rattus norvegicus 81 Olr880 ENSRNOG00000042424 ENSRNOT00000067319 1 1 1 60 7 3751904 3751928 CTCATTTACCACTGTATGTATTCCC 60 3751868 3751887 AGTGTTATCTCCTGTAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561662 ENSRNOG00000015297 ENSRNOT00000020516 1 1 1 90 9 15550642 15552392 AAGAAGTGAGAGGTGCCAG 59 15550570 15550588 TCCAGATCATAGTGCACGG 59 NA Rattus norvegicus 81 Ect2 ENSRNOG00000024365 ENSRNOT00000018055 1 1 1 80 2 112815751 112815770 CATTCCCTTTCTATCGGCTC 58 112814246 112815708 AGACTTCGGTGTTTCTCCA 59 NA Rattus norvegicus 81 Vamp2 ENSRNOG00000006989 ENSRNOT00000057295 3 1 1 61 10 55676201 55676220 TACCAGTAACAGGAGACTGC 59 55676244 55676769 TCATGATGTCCACCACCTC 59 NA DesignRelaxed Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 1 1 4 80 4 163884672 163884691 GGATCGGATGTAAACAAGCA 58 163880783 163884632 GAAGGAACTTCAGTTCTTCCTC 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 2 1 4 80 4 163884673 163884692 TGGATCGGATGTAAACAAGC 58 163880784 163884632 AAGGAACTTCAGTTCTTCCTC 58 NA Rattus norvegicus 81 RGD1306484 ENSRNOG00000005821 ENSRNOT00000007630 2 1 1 60 10 37582996 37583015 GAACAAGTTCTGGGTGAAGG 59 37583037 37583056 GAATAAACTGCCACTGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ran ENSRNOG00000000938 ENSRNOT00000001247 1 1 1 80 12 31323156 31323260 TGAGAAGAAGTATGTAGCCAC 57 31323096 31323114 TTGAACTTGATGGGTCCTC 57 NA Rattus norvegicus 81 Eef1d ENSRNOG00000021638 ENSRNOT00000029456 2 1 1 80 7 116929291 116929309 AGTACGCAGAGAAGAAGGC 60 116928690 116929251 CATCATCCCAAGGTTTAACATCC 60 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 2 1 1 60 5 173488376 173488398 CTTACCAGACATGGTTAGATCTG 59 173488338 173488356 ATGGACGGCATTACCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286 1 2 3 80 6 100002767 100010500 GTTTCAATCTGCGGCTGAC 60 100002705 100002725 TGAAAGCTGTCTTTGATGTGG 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286 3 2 3 108 6 100002767 100010500 GTTTCAATCTGCGGCTGAC 60 100002677 100002695 GAGTGATGGGACTGAGTCC 59 NA Rattus norvegicus 81 Mapk8ip2 ENSRNOG00000032828 ENSRNOT00000055792 2 1 1 80 7 130432345 130433591 CTGCGAGAAGGACAGTCTC 60 130433632 130433653 AACTCCTGGAAATCATCTTGGA 60 NA Rattus norvegicus 81 Bst1 ENSRNOG00000003064 ENSRNOT00000004094 3 1 1 88 14 71811388 71811406 TTGATTACCAGTCCTGCCC 59 71808197 71811338 TCTTGAATACTGCATGGATGC 59 NA Rattus norvegicus 81 Lmntd2 ENSRNOG00000017050 ENSRNOT00000022954 3 1 1 80 1 214200888 214200993 CTGTCAAGCAGCAGTTAGC 59 214200826 214200848 GGATCTCTAGTTCTCTTTGTTCC 58 NA Rattus norvegicus 81 Mir20a ENSRNOG00000035605 ENSRNOT00000053728 1 1 1 60 15 100180346 100180368 CACTAAAGTGCTTATAGTGCAGG 60 100180386 100180406 CTGTAAGTGCTCGTAATGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss4 ENSRNOG00000026650 ENSRNOT00000040313 3 1 1 80 8 49478012 49478032 GAACTTCAGATGCAGAATGGA 58 49474915 49476478 GCTCTTTCCACAGTCAAGG 59 NA Rattus norvegicus 81 Elavl4 ENSRNOG00000023601 ENSRNOT00000035252 3 1 1 80 5 130023887 130023906 TTGATCCAAAGGATGCAGAG 58 130010853 130023844 CGTACGACACCTTTATGGT 57 NA Rattus norvegicus 81 Tmem191c ENSRNOG00000001864 ENSRNOT00000002546 1 1 1 113 11 87977019 87977037 CATCCCGAGCTATTCGAGG 60 87976845 87976942 GATTGTGTTGCTCCAGGTC 59 NA Rattus norvegicus 81 Dhx58 ENSRNOG00000018247 ENSRNOT00000024718 1 1 1 80 10 88601072 88602479 CGACTTCTCGGTCTACTATACC 59 88601013 88601032 ATTCCTCCAGGTTTCCAGTC 60 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000074082 1 1 2 144 10 104953151 104953169 TCACAGTGACCTTGGAGAG 59 104953277 104955086 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 1 2 2 80 18 24749262 24749280 AACTGTGGCTCAATGTGAC 58 24748781 24749218 TGTACTTGGGTAGCTCCTG 58 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 3 2 2 80 18 24759521 24760503 TTGAGAAGGAAGAGGACCTG 59 24759460 24759480 CAGCATTACTCTTCACTGTGG 59 NA Rattus norvegicus 81 Olr931 ENSRNOG00000047264 ENSRNOT00000044977 2 1 1 60 7 16405305 16405324 TGTCCTACAACTGTCTTGCT 59 16405345 16405365 AGCTAAGATGAAAGCAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000047264 1 1 2 72 8 52753764 52753785 GATGTTTCTTATCTCACTGCCA 59 52762416 52762436 CTGGTAACAGATATTGGTGGA 57 NA DesignNoJunction Rattus norvegicus 81 Stx3 ENSRNOG00000021013 ENSRNOT00000028535 2 1 1 80 1 228161405 228161423 AAGACGACCTTGAACAGCT 59 228160014 228161361 GCTTCTCCATGCTCTTCAG 58 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 1 2 2 80 5 131851189 131851378 TGTACCCAGATGAAGTCGC 60 131851127 131851149 CAATATTGGAGCATCCAACTCTG 60 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 2 2 2 80 5 131858200 131860421 CTGTGGGAATTTGGTCGTC 59 131858138 131858156 ACCAGGTCATGGATCTTCC 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529,ENSRNOT00000064255 1 2 2 80 16 8793566 8793586 GCTGTTTACTCTGACTAGTCC 58 8793625 8793725 TGAATATTAGATCCGGTTCCTG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484,ENSRNOT00000075078,ENSRNOT00000071741 2 3 3 81 1 217573373 217573391 CATAGAATCCAGGGTGGCA 59 217573435 217575110 GTACACGGAGTTCACATCAG 58 NA Rattus norvegicus 81 AABR07065593.2 ENSRNOG00000058841 ENSRNOT00000085594 1 1 1 60 6 136183879 136185540 GTGCTTGTGAAACTGAACAC 58 136183838 136183859 CTACTAATAGAAGGGTGTTGGT 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cgref1 ENSRNOG00000007923 ENSRNOT00000010586 3 1 1 80 6 26807637 26807655 ACGTCTGCGGGATTATCTC 59 26807699 26807998 TATAGCAGGACTTGCTCCC 59 NA Rattus norvegicus 81 Myh3 ENSRNOG00000046276 ENSRNOT00000004147 2 1 1 80 10 53644268 53644287 CTGAGATTGCAGGATCTGGT 60 53644329 53644486 TTGTTCATCAGCCTCCTCAG 60 NA Rattus norvegicus 81 LOC690460 ENSRNOG00000042797 ENSRNOT00000065418 3 1 1 60 20 11604818 11604837 CCAGTGACTTGAGCTATGAC 58 11604860 11604878 TCAGTGCAAGAGTCACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl9 ENSRNOG00000017516 ENSRNOT00000023548 3 1 1 80 2 199343807 199344550 GATGGCAAATAAGGCTGCA 59 199343745 199343766 TTAGAGATGTTCTGGATGTGGA 59 NA Rattus norvegicus 81 LOC100361444 ENSRNOG00000011490 ENSRNOT00000015381 1 1 1 80 8 22857085 22857104 TACGGAGACTACAAGTGCAG 59 22857144 22858069 CGGCTCGATCCTTTAAATTCTC 60 NA Rattus norvegicus 81 Zbtb41 ENSRNOG00000011137 ENSRNOT00000015596 1 1 1 80 13 56521446 56522235 CACGTCAAGAGATTTCATCCT 58 56522274 56522295 ATCACATTTCCAACTCTCACTC 59 NA Rattus norvegicus 81 Hmgcs2 ENSRNOG00000019120 ENSRNOT00000026121 2 1 1 80 2 200476102 200477269 TTACCACAAGGTGAACTTCTC 58 200477311 200477329 TCATCCACTCGTTCAAGGT 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968,ENSRNOT00000048752 1 2 2 80 18 27406111 27406397 CATCATTGAGGACAAGGTGG 59 27406050 27406069 TCTTCACAGAACGACAATGC 59 NA Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 2 1 1 63 1 97714764 97714782 GACTATGCTGACAGTGCTG 58 97714809 97716737 CACTGGACAGGAGAGTGTG 60 NA DesignNoJunction Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 3 1 1 64 1 97714763 97714781 CGACTATGCTGACAGTGCT 60 97714809 97716737 CACTGGACAGGAGAGTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Piwil1 ENSRNOG00000000934 ENSRNOT00000001238 1 1 1 80 12 31621767 31621786 GACCAGAATCCAAAGAGCAC 59 31620473 31621729 GTTGTATTGCTTCCTGTAGTACTC 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724,ENSRNOT00000067420 3 2 2 80 8 53350269 53350290 ACTATAGTCTGTTCCGAAAGGT 59 53350330 53350840 AAGCTTCCTGGTACTTTCCT 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027593 1 2 3 91 10 15463701 15463876 ATGAAGATGTTGCAGGCAC 59 15463628 15463646 ATGTAGCTGATGAGGGCTG 59 NA Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 1 1 1 80 12 38318401 38319308 AAGCCAGGAGTTATTAGTGAG 57 38319350 38319368 CATCCGGTAGATGAAAGGG 57 NA Rattus norvegicus 81 Fbxl13 ENSRNOG00000043035 ENSRNOT00000065039 1 1 1 80 4 10124333 10128939 CGTCTTTCACAGATGAATCCA 59 10128978 10128999 TGGTTGTGTTGGATAGATTGAG 59 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000074951 2 2 3 91 4 61825562 61825583 TCTGATCCGGTTCCATATAGAG 59 61825632 61826191 AGTCAAAGACCTGAATGTTCTC 58 NA Rattus norvegicus 81 AABR07024637.1 ENSRNOG00000029131 ENSRNOT00000048001 3 1 1 80 16 9772976 9772995 TGTCTGAGGAGGAAATCTGG 59 9773034 9774701 AGTCTGAGGAATCATTACGTAGG 60 NA Rattus norvegicus 81 Trappc10 ENSRNOG00000023210 ENSRNOT00000032240 3 1 1 80 20 11201148 11204311 AGCTCTTAGAAGTCTCTGTCC 59 11204352 11204371 CTATCCTCTGCAAGACCTCC 59 NA Rattus norvegicus 81 Nup205 ENSRNOG00000010852 ENSRNOT00000014832 3 1 1 80 4 62762669 62762689 CAAGAAGATAATGTGGAGGGA 57 62762730 62762923 TACATTGGCACAAATCTGCT 58 NA Rattus norvegicus 81 Pwp2 ENSRNOG00000001210 ENSRNOT00000001605 1 1 1 80 20 11232386 11232406 TCTACTATGCACTGAGTGGAC 59 11232447 11232697 TGAGCGAGTACAGATCTAGG 58 NA Rattus norvegicus 81 Rrp36 ENSRNOG00000017836 ENSRNOT00000024010 3 1 1 80 9 16624467 16625484 CCTGAAGAAATCTGAGCAGC 59 16625526 16625545 AAACTCTCCAGCTTCTTGCT 60 NA Rattus norvegicus 81 Slc35f3 ENSRNOG00000049456 ENSRNOT00000071655 3 1 1 80 19 59259241 59259259 GGCTTCCACAGTCATTCAG 59 59259302 59261370 GAACAGAACCTTGTAGAGGG 58 NA Rattus norvegicus 81 Mir3582 ENSRNOG00000035651 ENSRNOT00000053774 3 1 1 60 18 2052474 2052494 GCAATCAATGCATAGCTACAG 58 2052515 2052534 CCAAATCGCCTCTTCAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc94 ENSRNOG00000029606 ENSRNOT00000050775 3 1 1 167 16 22852229 22852247 CAAAGAAGGCAAAGACGGA 58 22851467 22852098 TAGACCTGTCACTGTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Trim34 ENSRNOG00000042686 ENSRNOT00000055210 2 1 1 80 1 169437469 169437487 GTTTGTGAGCGTTCTCAGG 59 169437529 169438070 GAGATTCTCCTGACATTCCCT 59 NA Rattus norvegicus 81 Olr1077 ENSRNOG00000054107 ENSRNOT00000083574 3 1 1 60 7 13461008 13461027 TGTCATCCACTGCATTACAC 58 13460967 13460988 TAAGAACCAGAAATCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000026182 3 1 2 169 1 85489177 85489196 GAGTTGCACTTCTCATACCG 59 85489327 85489478 CGACATACGGTTAGGGACTC 60 NA Rattus norvegicus 81 Rnf34 ENSRNOG00000001331 ENSRNOT00000001799 1 1 1 81 12 39167766 39167988 AAACTTAGAGGAACAGAACCC 58 39167705 39167723 CACCTCTTCAAGGCTTGAC 59 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 2 1 1 63 10 70303560 70303578 CAGTGTTATGAAGCCGCTG 59 70303605 70304886 CTCTGGGTTGGTTTCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Krtap11-1 ENSRNOG00000027478 ENSRNOT00000029345 1 1 1 60 11 29710372 29710391 AGTGGGAGGCATTTCTACTG 60 29710331 29710349 TTGCTGGTATGTCCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6c ENSRNOG00000000843 ENSRNOT00000001119 2 1 1 80 20 5059369 5059729 TGTACCTTGGGAAGATGTGG 60 5059771 5059790 TTTCATTGAAGACCTCCCGA 59 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469,ENSRNOT00000084521 2 2 2 80 2 120282562 120282581 AACACCTTGCAAGTTCTGAG 59 120282131 120282519 GTACTCATCACTTGACGGC 58 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 1 2 2 80 5 134651676 134651696 CACTGTCTACGCAGTTATTCC 59 134652943 134654092 GCACAAAGAAATGTTGGGC 59 NA Rattus norvegicus 81 Gas2l2 ENSRNOG00000047546 ENSRNOT00000071218 3 1 1 80 10 70643028 70644033 CTCATCTTCATCCGGATCCTC 60 70642968 70642987 ATCCAGATAATGACCCAGCG 60 NA Rattus norvegicus 81 Evi5 ENSRNOG00000002039 ENSRNOT00000061630 1 1 1 80 14 2950589 2950607 TCGTGAACTGTTTAAGCCA 57 2950648 2952566 GGAAGATACTCCTGTATCATGC 58 NA Rattus norvegicus 81 Reep5 ENSRNOG00000020167 ENSRNOT00000027345 1 1 1 80 18 27158705 27158723 ATCTGGTGTTCGGTTATGG 57 27141129 27158663 TGGCTTTCATTGAGATGTAGG 58 NA Rattus norvegicus 81 Gemin7 ENSRNOG00000049772 ENSRNOT00000074418 1 1 1 143 1 80481898 80483367 TACTCTCGGAGCTTTCCAG 59 80481773 80481793 GGAATGCATCTGAAGCTAGAC 59 NA InUTR Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 2 2 2 80 4 9471610 9471628 CACCTGCCTACAACAAACC 59 9471670 9525407 TGCAGTAGCCATGAAATTCAC 59 NA Rattus norvegicus 81 AABR07052692.1 ENSRNOG00000047487 ENSRNOT00000074765 1 1 1 80 3 69637211 69637268 CATTGGTGCTTGGAGACAG 59 69637149 69637169 GGATAAAGATGGCTTCCTGAC 59 NA Rattus norvegicus 81 Nr5a2 ENSRNOG00000000653 ENSRNOT00000000812 2 1 1 80 13 53799946 53850872 GAACTGAAGGTTGATGACCA 58 53799885 53799903 TTGCCGGTAAATGTGATCC 58 NA Rattus norvegicus 81 Prp2 ENSRNOG00000005379 ENSRNOT00000007124 1 1 1 81 4 166076240 166077922 GGAACCAGAACTTCAGAACC 59 166077966 166077984 ATTACCAGGTGGTCTTGGT 58 NA Rattus norvegicus 81 Egln2 ENSRNOG00000020947 ENSRNOT00000028434 1 1 1 87 1 83971095 83971113 GAGGCATGTTGACAATCCC 59 83970667 83971044 GCCATGCACCTTAACATCC 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886,ENSRNOT00000064105 2 2 2 80 19 12575922 12575944 GACTGGTATCTTGGAAATCTCTG 59 12555797 12575887 TAGTATGACTCCTGTGTTATAGCC 59 NA Rattus norvegicus 81 Llph ENSRNOG00000004316 ENSRNOT00000005794 2 1 1 114 7 65005966 65005984 AAATGCAGTGTGATGTCGC 60 65008714 65008732 ATCCATACTGGGTACTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Adm ENSRNOG00000027030 ENSRNOT00000036718 1 1 1 85 1 175445714 175445732 ATGTTATTGGGTTCGCTCG 58 175445778 175445957 CACTTATTCCACTTCTTTCGGA 59 NA Rattus norvegicus 81 Mapk1 ENSRNOG00000001849 ENSRNOT00000002533 1 1 1 80 11 88231791 88236620 ATCTCAAGATCTGTGACTTTGG 58 88231732 88231753 CTACATACTCTGTCAAGAACCC 58 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724,ENSRNOT00000078117 2 2 2 80 8 13224682 13224700 GAAGAAACTCGGCTCAGTC 58 13222116 13224639 AGTCACTTGGTTTCTCTGGA 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079628 1 1 18 85 1 43508754 43697823 CGAACTAACCACCAGACCT 59 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA InUTR Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089428 1 1 18 80 1 43508704 43508723 GAGTCCGTCAGAACACTAGG 60 43508766 43516735 CTACTGACTGAGGCTCCTG 59 NA Rattus norvegicus 81 Trappc6b ENSRNOG00000004103 ENSRNOT00000005568 2 1 1 81 6 80147647 80147668 CTTCAGGACAACAAATTTCGAC 59 80143556 80147606 ACGCTAGATACTTGGATGCA 59 NA Rattus norvegicus 81 Ttc9c ENSRNOG00000019464 ENSRNOT00000026376 2 1 1 80 1 225006354 225010555 AATAGGCAACCTAAAGACGC 58 225006293 225006312 CTCTTTCCTATGGTAGCTGC 58 NA Rattus norvegicus 81 Timm10 ENSRNOG00000007883 ENSRNOT00000010619 1 1 1 109 3 72227241 72229676 TACAACAGAATGACCAGTGC 58 72229748 72229766 TACTTGGATACGCATCGGT 59 NA Rattus norvegicus 81 Mad2l1bp ENSRNOG00000019463 ENSRNOT00000026331 1 1 1 89 9 17217127 17217145 CTACTAAGCTGGCAGTCAC 58 17217197 17217596 CAGTCCAATCCAAATTTGGG 57 NA InUTR Rattus norvegicus 81 LOC100362333 ENSRNOG00000004843 ENSRNOT00000006416 3 1 1 60 7 118816439 118816458 CAGTGATGTACTGTCAGCCA 60 118816398 118816417 TTTCAATGGCGTTACGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 3 2 2 80 7 77159287 77159307 CCAGTGTCTGATACCTCAGAG 59 77159134 77159246 AGTCAAACAGAATGCTGGGA 60 NA Rattus norvegicus 81 Cdo1 ENSRNOG00000000158 ENSRNOT00000000172 3 1 1 80 18 40712101 40712121 CTTGTGGATCAAGGAAATGGG 59 40709487 40712060 GTGATCGTGAATACTGCTGC 60 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 3 2 2 64 1 90961116 90961138 CTCTAATCTACTATGTCCCTGAC 57 90959612 90961094 AACCTGTCGAAGCAAATACTC 59 NA DesignNoJunction Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195,ENSRNOT00000083764 1 2 2 80 9 17203135 17203155 CATGAGATTCAGTCTGGACGA 60 17202787 17203094 GTAATTCACCACCTCTCCCT 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195,ENSRNOT00000083764 3 2 2 80 9 17203135 17203153 TGAGATTCAGTCTGGACGA 58 17202785 17203092 CTGTAATTCACCACCTCTCC 58 NA Rattus norvegicus 81 AABR07062211.1 ENSRNOG00000061664 ENSRNOT00000087219 1 1 1 80 4 165117997 165118016 CTTCAGGGTTACAGAACCAG 58 165115447 165117957 GTAGATTAGAGTTTCCTCTGGG 58 NA Rattus norvegicus 81 St3gal1 ENSRNOG00000008209 ENSRNOT00000010980 1 1 1 80 7 107898921 107900303 GTGATGAGGTGGACTTATATGG 58 107898862 107898880 CTGCTGATGGGTTGTTCTC 59 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 3 2 2 80 5 6020357 6020377 AGAATTTAAGGGAAGTGAGGG 57 6019872 6020318 TGTTGTAATAGCTCTGCTTACC 58 NA Rattus norvegicus 81 Nlgn2 ENSRNOG00000015430 ENSRNOT00000056872 3 1 1 82 10 56435498 56435517 ATCACCATCTTTGGGTCTGG 60 56435326 56435453 TTCTGGAACAGCCCTTCTG 60 NA Rattus norvegicus 81 Mpzl2 ENSRNOG00000016085 ENSRNOT00000021693 3 1 1 114 8 49347024 49347043 AAGGGCGGATAAATCTGAGG 60 49349441 49350891 AATCCTCAGCTTCCCACAG 59 NA InUTR Rattus norvegicus 81 Chchd6 ENSRNOG00000060248 ENSRNOT00000088753 2 1 1 80 4 121545155 121545174 GTGCTTACTGTTCCTTCACC 59 121541581 121545114 GGACACTTTAAAGTCTCCCTG 58 NA Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 2 2 2 80 2 93537550 93538049 ACCAGAATCAGAACATTGTCCT 60 93538089 93538108 CACCCTTAGGATCTGTCCAC 60 NA Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000048908 2 1 2 105 6 142635626 142635725 AGCTACATGTGTCCACTCC 59 142635539 142635557 GAATGTGTAGCCAGAAGCC 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000049799 ENSRNOT00000047974 3 1 1 60 10 44174490 44174508 TTCTTCTGTGAGGTCCGTG 59 44174448 44174466 TCTCATACAGCCAGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 1 2 2 80 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117846 ACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Lypd6 ENSRNOG00000038980 ENSRNOT00000059588 1 1 1 80 3 35680068 35686924 CCATCCTTCAACCACTCCA 59 35686965 35686986 CGGTTGCATTCATAATTGTCTG 59 NA Rattus norvegicus 81 Mak ENSRNOG00000015101 ENSRNOT00000020672 1 1 1 80 17 21563959 21563979 CAAGAAAGAAGTGGGATCAGC 59 21564021 21567336 GTGCTCCAGGTATAGTCGG 59 NA Rattus norvegicus 81 Rbm25l1 ENSRNOG00000002871 ENSRNOT00000003832 3 1 1 60 10 10457677 10457696 CAACTGTCCTAGTGCCTACC 60 10457719 10457737 TGATCCTTTCTTGCTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Susd3 ENSRNOG00000016525 ENSRNOT00000032997 3 1 1 62 17 15821753 15821771 TGACTGGTCTTCAGGAAGC 59 15823036 15823054 TTGAAGCCAAAGGTCTCGT 60 NA DesignNoJunction Rattus norvegicus 81 Prdm14 ENSRNOG00000021792 ENSRNOT00000034525 1 1 1 81 5 5715492 5718130 CCTACCTGTGTTCAACGTG 59 5718175 5718193 CTGTCTCCAGAGTGGACTC 59 NA Rattus norvegicus 81 Rilpl2 ENSRNOG00000001061 ENSRNOT00000001403 2 1 1 99 12 37552583 37552603 AAACTCCAGGAGGAAGAAGAG 59 37552664 37556014 GACCGGAAAGAGAACAGCT 60 NA Rattus norvegicus 81 LOC102553002 ENSRNOG00000031459 ENSRNOT00000006118 2 1 1 86 1 65701530 65701548 TGCAGTTATCTCCCAGCTG 60 65694794 65701480 AGAATCCAACCTGGATGGC 60 NA Rattus norvegicus 81 Zfp653 ENSRNOG00000014065 ENSRNOT00000018874 2 1 1 80 8 23068570 23068588 TGGAGATGTTCCACTGTCC 59 23067725 23068526 CAAGGTTGACGTGGTTCTG 59 NA Rattus norvegicus 81 Rn60_1_0436.2 ENSRNOG00000060991 ENSRNOT00000078186 3 1 1 60 1 43532992 43533011 CAGAGTCCTTTGCTTTGACC 59 43532951 43532972 GGTTACAATTGCTTGACTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377,ENSRNOT00000086349 1 2 2 80 1 174430159 174434037 CATACGATGAAGACTACCAGGA 59 174430100 174430119 TTTCCTGGTGGTTCTCAGAC 60 NA Rattus norvegicus 81 Bmp6 ENSRNOG00000013717 ENSRNOT00000018359 3 1 1 80 17 26955285 26955390 GTACAGACCTTGGTCCACC 60 26955223 26955242 CGAGATGGCATTCAGTTTGG 60 NA Rattus norvegicus 81 Cphx ENSRNOG00000025433 ENSRNOT00000035065 2 1 1 80 16 3790785 3790806 CTTATCCAGATTTCACGACCAG 59 3788298 3790747 TCTGAAACCAGTTATCGATCAC 58 NA Rattus norvegicus 81 Afg3l2 ENSRNOG00000017965 ENSRNOT00000024632 2 1 1 80 18 63181387 63185231 CCTCCGTACGCTTTATCAG 58 63181325 63181344 TAAGCAGCAATTACATCCCT 57 NA Rattus norvegicus 81 Myrfl ENSRNOG00000021833 ENSRNOT00000068774 3 1 1 80 7 59841518 59841538 TGTACAGTACGACTACAAACC 58 59840642 59841476 TCTTGGGCAATCATTCCTG 58 NA Rattus norvegicus 81 Rnf182 ENSRNOG00000018070 ENSRNOT00000024323 2 1 1 142 17 24242724 24289906 CTGGTCAGATCCTTCAGCT 59 24290011 24290030 ATCACATCATCCGAGTCAGG 59 NA InUTR Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 2 2 2 81 12 40435420 40435438 GGTTCTGAGGAAGAAACCG 58 40435483 40438266 AAGGGCTTTCATGATCCTG 58 NA Rattus norvegicus 81 Nprl2 ENSRNOG00000021660 ENSRNOT00000051522 1 1 1 80 8 116300341 116300575 CATGTTGATGAAAGGAAGCTG 58 116300615 116300635 CACTCGGACTGGATATTTCTG 58 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201,ENSRNOT00000084049 3 2 2 84 4 117261661 117261809 GCTGTCACCTACAGGAGTG 60 117261595 117261613 GGGAGACAATGTCTCTGCA 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 1 1 1 80 1 76345679 76345700 GCAATAACATTGTTGCCAACTC 60 76338600 76345643 GGTATCCTTACCATTCATTCTCAG 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 1 1 2 136 7 54012508 54012526 AGTGAAACATCGCACTCCA 60 54022612 54024193 CAGATTGAGCTTCACTTCCAG 59 NA Rattus norvegicus 81 Nsun7 ENSRNOG00000025494 ENSRNOT00000039835 3 1 1 87 14 43559142 43559162 CCAGAGACAGTTAGGAAACAG 58 43558741 43559096 CTTCTTCAAGGCTTACTTTACC 57 NA Rattus norvegicus 81 Olr1251 ENSRNOG00000046136 ENSRNOT00000071452 2 1 1 60 4 1671797 1671817 TACTTCTGTGATCTCCTCCCT 60 1671836 1671857 TCTCATTGACATAGATGCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg9 ENSRNOG00000019596 ENSRNOT00000026669 1 1 1 81 1 81276860 81276878 CCTTCCTCTTCACGGTCTG 60 81276922 81280340 GTTTGCAGGAACCTGTACAG 59 NA Rattus norvegicus 81 LOC681356 ENSRNOG00000050666 ENSRNOT00000041763 2 1 1 60 18 40088021 40088040 AAGCTCAATAAAGCCGTCTG 59 40088063 40088081 GTACTCGGATTCGGTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfa ENSRNOG00000016182 ENSRNOT00000057441 3 1 1 151 4 118040385 118040404 GGCTGTCCTCATTATCACCT 59 118041817 118042326 TTCAGACCACTGTCTCAGAG 59 NA Rattus norvegicus 81 Luc7l ENSRNOG00000020488 ENSRNOT00000060078 1 1 1 80 10 15555424 15561808 AGAAGCAGAGGAAGAATACAG 57 15561850 15561868 GAACAAACCTCGCAAACAC 58 NA Rattus norvegicus 81 Pvalb ENSRNOG00000006471 ENSRNOT00000067635 3 1 1 81 7 119439986 119441422 CTTTACTGCTGCAGACTCC 58 119439923 119439941 CTTCACATCATCCGCACTC 59 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 1 1 1 60 8 41253298 41253319 TACATTCTTGGTTTCCATGCTG 59 41253338 41253358 CTTGACATCCTTGTTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0909.1 ENSRNOG00000042208 ENSRNOT00000064498 1 1 1 60 8 91296658 91296678 CAGGTTTGTTAGCAGATGCTC 60 91296618 91296636 AAGTTGGACGCTTCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem70 ENSRNOG00000006608 ENSRNOT00000008680 3 1 1 92 5 2034287 2034306 TGTCTGCCTCTTACATACAC 57 2021184 2034235 CATTTCACACCAAATACTGTCC 58 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 3 2 2 80 17 17828342 17836683 TAAAGTTTGAACGAGAGGTCC 58 17828282 17828300 TGATATGGCACACTGTCTG 57 NA Rattus norvegicus 81 Trim45 ENSRNOG00000015347 ENSRNOT00000043146 2 1 1 85 2 203304810 203304831 CCAAGGCTATGAAGTATATGGG 58 203304874 203306460 CTCTATGGAGATCTTCTCCCTG 59 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 1 2 2 80 X 14965038 14965151 GGATATCTTTGGGTTTATTGGCTC 60 14964981 14965000 ACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Ovch2 ENSRNOG00000019794 ENSRNOT00000026807 3 1 1 80 1 172021921 172021940 GGATCTCCTGGGATCTTCAC 59 172020665 172021878 CTTTCTTCGATGGCCAGTC 59 NA Rattus norvegicus 81 Mtpn ENSRNOG00000011857 ENSRNOT00000015808 3 1 1 80 4 63012927 63022338 CTTCTGTCAAAGGGTGCTG 59 63012865 63012883 GATTGCCTGGTTGTCAGTG 59 NA Rattus norvegicus 81 AABR07065699.1 ENSRNOG00000050102 ENSRNOT00000072633 3 1 1 74 6 139560046 139560172 AAAGGTGTCCAGTGTGAGG 60 139560209 139560228 GAGTTTCATGGACCTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1349 ENSRNOG00000016546 ENSRNOT00000022152 2 1 1 60 9 99745811 99745829 TGCTCTTTGCTGTCTTCCT 59 99745853 99745871 ATCATAGTGAGGTTGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311703 ENSRNOG00000053659 ENSRNOT00000090773 1 1 1 80 1 185559970 185559988 GAGCATGGACAGCAAACTG 60 185559018 185559930 TCTCCATCATGATCTTCTACCTC 59 NA Rattus norvegicus 81 Olr1547 ENSRNOG00000049012 ENSRNOT00000039939 3 1 1 60 11 43465458 43465478 TGGTCATCTATCTCATCACCA 58 43465496 43465518 TCATTCCAGATGAGAGTGATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910835 ENSRNOG00000048343 ENSRNOT00000075524 1 1 1 80 8 122417671 122420915 ACTTCAAGGCCAATGACCT 59 122417609 122417627 TCATCATCTCGTCCTCAGG 58 NA Rattus norvegicus 81 Glul ENSRNOG00000049560 ENSRNOT00000075480 1 1 1 81 13 71333973 71335305 TGTAGAAGAGTTACCCGAGTG 59 71335348 71335366 ATGGAGGTACATGTCGCTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000085241 3 1 6 82 9 17341352 17341371 ACCATGAACTTTCTGCTCTC 58 17341416 17353786 TTGGCTTGTCACATCTTGG 58 NA InUTR Rattus norvegicus 81 Kcnj3 ENSRNOG00000005369 ENSRNOT00000007335 2 1 1 93 3 41029702 41029720 TTATGACCTATCCCAGCGA 58 41029777 41180234 TTGACAAGTCATCCCTGTG 57 NA Rattus norvegicus 81 Cog2 ENSRNOG00000018228 ENSRNOT00000058074 3 1 1 80 19 57301779 57301798 ACAAACTCCTGGAATTCGTC 58 57301841 57303814 TGCCTTTCTCACTTGACAC 58 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 2 2 2 81 2 18412046 18415167 ATCCAACTTCAATGGCCGA 60 18415211 18415230 ATTGAGACAAGCTTGCACTG 59 NA Rattus norvegicus 81 LOC689412 ENSRNOG00000027254 ENSRNOT00000035431 3 1 1 80 13 65551151 65551216 TTGGTTATCTGGTGTTGATAGC 59 65551256 65551275 CATAACCTCTGTCCTCTGGG 59 NA InUTR Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 3 3 3 91 3 22918931 22938765 TTATGTCACCATGGGTTCTG 58 22892718 22892736 GCTTCTTGGCTTCTTCCTC 59 NA Rattus norvegicus 81 Olr889 ENSRNOG00000033344 ENSRNOT00000047673 3 1 1 60 7 4182771 4182791 GGTTTCCATCATGTATGGCAG 60 4182731 4182749 CTGTTCTTTGGCAGAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex38 ENSRNOG00000010162 ENSRNOT00000013480 2 1 1 82 5 134637528 134637927 TCTCTGGCATGTGGATCTC 59 134637464 134637483 GTGCAGAAAGATTATGCAGC 58 NA Rattus norvegicus 81 Ndufb5 ENSRNOG00000011949 ENSRNOT00000016051 3 1 1 80 2 119150710 119153222 GCCGACTTACGGTTAAAGG 59 119153262 119153284 GGTTGGATATTGATACCAAGGTC 59 NA Rattus norvegicus 81 Nfu1 ENSRNOG00000018410 ENSRNOT00000024884 2 1 1 81 4 118820129 118820147 GTTCTTGAGACGAGGACCA 59 118820190 118823688 CAATCCTGAATAACTGCCTGG 59 NA Rattus norvegicus 81 E2f5 ENSRNOG00000010760 ENSRNOT00000044847 2 1 1 80 2 88353604 88354494 GTACCTATTCCAGAAATGGGAC 58 88353545 88353563 CACATGGATTGGTCCTGAG 58 NA Rattus norvegicus 81 AC106292.2 ENSRNOG00000059017 ENSRNOT00000085226 2 1 1 60 11 65744159 65744178 ATTCCTGCAAATAGACAGCC 58 65744201 65744219 CAGACGCTGAGATACTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr877 ENSRNOG00000043299 ENSRNOT00000066301 2 1 1 60 7 3450798 3450818 ACCCATGTACTTCTTCCTCAG 59 3450758 3450776 AAACGTGGATGTGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307595 ENSRNOG00000011239 ENSRNOT00000014928 3 1 1 100 2 138194453 138194471 CATGCTTCTCAGTCAGCAG 59 138194535 138197270 CGATCAGAAATGTTCCCGG 59 NA InUTR Rattus norvegicus 81 Rgs13 ENSRNOG00000003888 ENSRNOT00000005163 2 1 1 92 13 60994709 60997671 TCCCTTCAAACCTTACTTTGGA 60 60973443 60973461 CTGTGTACACTACTGGGCC 60 NA Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 2 2 2 95 7 121299762 121300067 AATTGCTCACACTCAGATGC 59 121299686 121299704 AGCTTCTCAGCTACAGTGC 60 NA Rattus norvegicus 81 AABR07065814.6 ENSRNOG00000060468 ENSRNOT00000071555 3 1 1 60 6 142385681 142385701 TATTCCATGAATTGGGTTCGC 59 142385641 142385660 TTATGTGAGCAACCCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp329 ENSRNOG00000019376 ENSRNOT00000026204 2 1 1 88 1 65781553 65791835 GCAACCTGTATATGGAACATGAG 60 65791880 65791901 CCTTCCATTTCTACCTCAAAGG 59 NA InUTR Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 3 1 2 91 2 148621020 148621039 TTCAGGAATCAAAGAGCCTC 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139,ENSRNOT00000015119 2 2 2 94 2 148609947 148609967 TAGCTATTCCTGTTGATGGTG 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Rps15al2 ENSRNOG00000032877 ENSRNOT00000046642 3 1 1 60 11 84094695 84094714 GGAAGATCGTTGTGAACCTC 59 84094734 84094755 AATCTAGGGCTTATAACTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sod2 ENSRNOG00000019048 ENSRNOT00000025794 2 1 1 80 1 47916819 47916838 GCTTCAATAAGGAGCAAGGT 58 47916207 47916776 GAATAAGGCCTGTGGTTCC 58 NA Rattus norvegicus 81 Cdk4 ENSRNOG00000025602 ENSRNOT00000031796 3 1 1 80 7 70350071 70350220 ATGTTGTACGGCTGATGGA 59 70350258 70350282 CTATATGCTCAAACACTAAGGTGAC 60 NA Rattus norvegicus 81 Fam110d ENSRNOG00000016491 ENSRNOT00000022130 1 1 1 145 5 152473807 152473825 CTGAAACTCAGCGTCTCCA 60 152471928 152471946 GATGGTGTAGTGGGTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07068417.1 ENSRNOG00000025797 ENSRNOT00000034533 1 1 1 80 9 104478427 104478930 GCACAATATGAACATCATCCCT 59 104478368 104478386 AGCTTCCTGTTCAGCTCTG 60 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 2 3 3 80 10 54229073 54229093 GATCAAGTTGAGCAACAAGAC 58 54229135 54233078 CGCATGAGATCATCTCCTG 58 NA Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 2 1 1 80 4 38696851 38696872 GAGAATGTAAACTACCATGCCC 59 38693375 38696811 GATTGCAAGGCAAAGAACAC 59 NA Rattus norvegicus 81 Rbm11 ENSRNOG00000029147 ENSRNOT00000047240 3 1 1 80 11 14011011 14011030 TTCTCGCTCTTCTGAACCAG 60 14011071 14011611 ATTTCATCGTTCCTGAAGCTG 59 NA Rattus norvegicus 81 Nts ENSRNOG00000004179 ENSRNOT00000005706 1 1 1 80 7 44115277 44118722 CATCGAAGGTCAGCAAAGG 59 44115215 44115235 TGTTCAGGTTATTGATCAGGC 58 NA Rattus norvegicus 81 Nts ENSRNOG00000004179 ENSRNOT00000005706 2 1 1 80 7 44115277 44118722 CATCGAAGGTCAGCAAAGG 59 44115215 44115236 TGTTCAGGTTATTGATCAGGCT 60 NA Rattus norvegicus 81 Krtap3-3 ENSRNOG00000045678 ENSRNOT00000039983 3 1 1 195 10 87468578 87468596 CCTCTGACAAGTCCTGTCG 60 87468401 87468420 ACATAGGTGGTGAGGTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap1-5 ENSRNOG00000054186 ENSRNOT00000084798 2 1 1 75 10 87500754 87500772 AGACAGGCTATGGCATTGG 60 87500697 87500715 CTAACACGGTAGTTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 2 1 1 69 16 27472242 27472260 CCTCTGAGGAGAAGATCGC 59 27472175 27472210 TCTTTAGCTCTGTAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Crygc ENSRNOG00000014950 ENSRNOT00000020078 3 1 1 81 9 71787959 71787977 CTACCCTGACTACCAGCAG 59 71786572 71787914 CCTGTGGGAACCTGTATGG 60 NA Rattus norvegicus 81 Gnao1 ENSRNOG00000019482 ENSRNOT00000026373 1 1 1 80 19 11582681 11668526 TGAAGCAGATGAAGATCATCCA 60 11582622 11582640 TGTTGCTGTAGACGACAGG 60 NA Rattus norvegicus 81 Akr1b7 ENSRNOG00000009875 ENSRNOT00000013423 3 1 1 80 4 61857457 61857475 AGTACTGTCACTCCAAGGG 58 61857519 61857931 CCTCAGGCTTAGCATAAGG 57 NA Rattus norvegicus 81 Dsn1 ENSRNOG00000006236 ENSRNOT00000008254 3 1 1 80 3 153103212 153103662 TGTCAGTACAGCTCAAGAAGAG 60 153103153 153103172 TCTGTAGATGGAGCTTGAGC 59 NA Rattus norvegicus 81 Folr2 ENSRNOG00000019890 ENSRNOT00000026925 2 1 1 81 1 166919194 166919212 TCAACGTTTGCATGGATGC 60 166916038 166919150 TTCCATGGACTACACTGGTC 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 3 1 1 80 13 68786426 68790951 CTGAAAGCAAGAGACACATCTC 59 68790991 68791010 CAACATCTCCTTCAGTCCCA 60 NA Rattus norvegicus 81 Pkp4 ENSRNOG00000005504 ENSRNOT00000059246 1 1 1 80 3 45397240 45398289 GACTACGACAGCAAGACAG 58 45398332 45398351 CTGAGGGACTTCTAGTTCCA 58 NA Rattus norvegicus 81 Pkp4 ENSRNOG00000005504 ENSRNOT00000059246 2 1 1 80 3 45349308 45365582 CCTTGGAGATCAACAGATGTG 59 45365620 45365642 GAGATAGTTGTTGGGATGAACAG 59 NA Rattus norvegicus 81 Gna14 ENSRNOG00000014840 ENSRNOT00000020201 3 1 1 80 1 235167260 235167278 AGATTGAACGGCAACTTCG 59 235167322 235270822 CACTCTCACCAGTTCCCAG 60 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 3 2 2 145 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309112 42309130 GAAGAAGTCCATGTGGCTG 59 NA Rattus norvegicus 81 Phf7 ENSRNOG00000018996 ENSRNOT00000044991 3 1 1 80 16 7326115 7326134 AAGTGTCGAGAACATCAGGA 59 7325527 7326073 GACGTGTGGGCATATTTCTG 59 NA Rattus norvegicus 81 LOC100363048 ENSRNOG00000032740 ENSRNOT00000050090 1 1 1 60 9 61552455 61552473 ATCGGCATGTTCTTCACTG 58 61552496 61552515 GAGTGTACTTGGTAGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Onecut1 ENSRNOG00000008095 ENSRNOT00000032280 1 1 1 98 8 81767300 81767318 AGACTTTCCGGAGGATGTG 59 81792580 81792598 CGTGTTCTTGCTCTTTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 1 1 1 94 X 15324582 15325006 CTGAGGTACTTGCTAGGGC 60 15324506 15324524 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Rhob ENSRNOG00000021403 ENSRNOT00000008008 1 1 1 60 6 33690808 33690826 GACTACGATCGTTTACGGC 59 33690766 33690785 AGAAGCACATAAGGATGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1092 ENSRNOG00000046735 ENSRNOT00000042742 2 1 1 80 7 15706419 15706439 GGGTTGGTGGATCATTTATGG 59 15524348 15706378 GATGGATCTCATTGGGTCCA 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087,ENSRNOT00000015084 3 2 3 80 1 136699332 136707667 TCATTCCACACTATGGCTG 57 136699270 136699288 CACAGACGATGACAAACAC 57 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 1 3 5 80 4 164530392 164530412 GCATGAATGTAAACAGACCTG 58 164520728 164530352 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Herpud2 ENSRNOG00000029995 ENSRNOT00000046432 3 1 1 80 8 26268005 26268705 TGCTGCTGGTTTATTTACACC 59 26267945 26267963 CAACATTGTTGGGAGCCTG 59 NA Rattus norvegicus 81 Spock3 ENSRNOG00000029903 ENSRNOT00000059750 3 1 1 80 16 28606060 28606081 GTCTGCATTACTCAAGATGCTC 60 28524197 28606024 TCCTCCTACTTCTTTCATACTGTG 60 NA Rattus norvegicus 81 Tmem205 ENSRNOG00000011747 ENSRNOT00000015684 3 1 1 81 8 22936445 22936463 ATCAACCTCTGCATCTTGG 58 22932504 22936400 GAAGCAGTAGGGTAAGCTG 58 NA Rattus norvegicus 81 RGD1563405 ENSRNOG00000009002 ENSRNOT00000011900 1 1 1 60 5 17399683 17399702 CTTAAGAGCTACGGAGTGAC 58 17399642 17399662 GAGTCTTATCATATGTGGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Miox ENSRNOG00000008694 ENSRNOT00000011941 3 1 1 80 7 130310443 130310462 CACAGAACTTGGCATGTACC 59 130310502 130310619 TGGTATAGGTACTCATCATGGC 59 NA Rattus norvegicus 81 Fgf19 ENSRNOG00000020899 ENSRNOT00000028365 1 1 1 80 1 218058931 218061399 GATATACGGGCTGATTCGC 58 218061443 218061461 CTGTACTGGTTGTAGCCCA 59 NA Rattus norvegicus 81 Lhfpl2 ENSRNOG00000011032 ENSRNOT00000014795 3 1 1 87 2 23827752 23848447 GAATCGCAGGTCTGTTCCT 60 23848498 23848516 GCATATCGTCCACAGTCGA 60 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 1 1 1 80 1 126586946 126586965 CTGGCTCAGTCAATAAAGGA 57 126587007 126588226 AGAGAACAGCTGATTCTCTG 57 NA Rattus norvegicus 81 Ilkap ENSRNOG00000020115 ENSRNOT00000027295 2 1 1 80 9 98519057 98520194 GAGATAGTCGGGCAATCCT 59 98518995 98519014 GATTGTGCTCTTTGCTGAGG 60 NA Rattus norvegicus 81 Colca2 ENSRNOG00000042165 ENSRNOT00000065744 1 1 1 80 8 55676700 55676718 TCAACTCTGCACAAATCGC 59 55675211 55676657 GCATCAGATGCAGGTTATGG 59 NA Rattus norvegicus 81 Pou3f2 ENSRNOG00000006908 ENSRNOT00000009043 1 1 1 60 5 36682279 36682298 TGAACAAGTGGTTGGAAGAG 58 36682238 36682257 ATCTTGTCTATGCTGGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrk2 ENSRNOG00000004048 ENSRNOT00000005438 3 1 1 80 7 132932365 132932383 CTGGCCCATCCAAATACGA 60 132932427 132932790 TAGAATTCCTCACGGCCTG 59 NA Rattus norvegicus 81 Emd ENSRNOG00000058882 ENSRNOT00000080990 2 1 1 80 X 156455442 156455460 GTACGAGACCCAGAGAAGG 59 156455244 156455400 GAATCCAAGTCTGAGAACCGA 60 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 2 1 1 80 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328450 36328469 TCTGGTGTTTCAAGACTTCC 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 1 2 2 80 11 27026480 27026500 TGGTTTCAACTATTCCCTTCC 58 27024745 27026439 AACCATTTGTACAAGCAAGC 58 NA Rattus norvegicus 81 Arfgef1 ENSRNOG00000005703 ENSRNOT00000007766 3 1 1 80 5 8738359 8738378 GGAGAGCTTGCAAACTTCAG 60 8738421 8738565 TGTTGGAGACCTGTTTCGT 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 1 1 2 80 9 82375183 82375768 TTTCACAGGTAACCCAGATCTC 60 82375124 82375143 CAATGGTGTCGTTGAAGAGG 59 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 1 1 1 80 2 204298381 204300626 TTAACCAAAGATGGTTTGGTCG 60 204298322 204298342 ACATCACAATAAGACAGGCCA 60 NA Rattus norvegicus 81 Frzb ENSRNOG00000007765 ENSRNOT00000010247 2 1 1 80 3 67637095 67640680 GTAAGAAAGTCAAGCGCTGG 60 67637034 67637053 GATTCTGAGTGGAATCGCTG 59 NA Rattus norvegicus 81 Cct8 ENSRNOG00000001592 ENSRNOT00000002169 1 1 1 80 11 27130987 27131957 GAGTGGATCAGATCATCATGG 58 27130927 27130945 TTTGGTCATCATCCCAGTC 57 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 3 1 4 83 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353561 167353581 GGAGATCTGAATCTGAGTCCT 59 NA Rattus norvegicus 81 Hao1 ENSRNOG00000004601 ENSRNOT00000006330 1 1 1 80 3 127453248 127453267 TAAACATGGTGTGGATGGGA 59 127448722 127453206 AGGGCATCAATAGTAGCTGG 59 NA Rattus norvegicus 81 AABR07065886.2 ENSRNOG00000046401 ENSRNOT00000051410 2 1 1 83 6 143701895 143701996 TAACTGCTGGTGTCCACTC 59 143701830 143701850 AGGACATCTTTACTGAAGCCC 60 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 3 2 2 80 7 130334181 130334200 TCTTTAGTGCAGGAAGATGG 57 130334243 130334340 CAGTGACAGGAACTCATCC 58 NA Rattus norvegicus 81 Eme2 ENSRNOG00000024867 ENSRNOT00000030458 1 1 1 83 10 14256052 14256070 ATGAGCAGGAACAGTTGCT 60 14255364 14256005 AAGGTGGGTCTGTCATCTG 59 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823,ENSRNOT00000043387 3 2 2 80 1 225931391 225931750 AGAAGACAGAGAAGGCTAAGG 59 225931331 225931351 CCATCTCTTCCATCTTCTTGG 58 NA Rattus norvegicus 81 Stom ENSRNOG00000019147 ENSRNOT00000025904 1 1 1 80 3 14527708 14538115 AGTCCTTCAGGGATAATTCCA 58 14527648 14527667 TAAGCACGAAGATGAACGAG 58 NA Rattus norvegicus 81 Stom ENSRNOG00000019147 ENSRNOT00000025904 2 1 1 80 3 14527704 14538111 CTTCAGGGATAATTCCAAGGC 59 14527644 14527665 GTTATAAGCACGAAGATGAACG 58 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 1 2 2 80 6 104322441 104323479 TAATGCTACATAAGGCTCCAG 57 104323521 104323539 TTCTGATTCGATTCCGCTC 58 NA Rattus norvegicus 81 Dapl1 ENSRNOG00000005743 ENSRNOT00000007632 2 1 1 130 3 45539342 45539361 CAGTTACAACTGGCACTCAG 59 45539454 45548546 ATCCCTCCAGCTTTCACTG 59 NA Rattus norvegicus 81 Abl2 ENSRNOG00000004305 ENSRNOT00000059524 2 1 1 80 13 74232370 74232853 CTTCATCCACAGAGATCTTGC 59 74232894 74232913 CTTAGACCAAAGTCAGCCAC 59 NA Rattus norvegicus 81 Asb1 ENSRNOG00000020322 ENSRNOT00000027528 2 1 1 80 9 98682293 98684484 AAAGAAGCCAGAAGTATTCCCA 60 98684524 98684543 CAGTCGGTATTTGCCAAGAG 59 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 1 2 2 80 12 40702376 40703017 TAAAGCAGCATGTGGAGAC 58 40703060 40703079 ACTTGACAACAGAAAGCTCC 59 NA Rattus norvegicus 81 Sycn ENSRNOG00000019879 ENSRNOT00000026907 1 1 1 80 1 85219881 85219899 CTCGACTGGAAGAGTACCG 59 85218950 85219840 ATCAATAGCACTTGCAGTAGAG 58 NA Rattus norvegicus 81 Hist3h2bb ENSRNOG00000031790 ENSRNOT00000041187 1 1 1 60 10 45297085 45297103 GTCAACGACATCTTCGAGC 59 45297043 45297062 GCTTGTTGTAATGAGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066965.1 ENSRNOG00000050239 ENSRNOT00000068080 1 1 1 90 9 23905326 23919865 CTGAAGGAAGGGTACTGCC 60 23905254 23905272 TCAGTCTTGTCCAAGGCAG 60 NA Rattus norvegicus 81 Wdr45 ENSRNOG00000009749 ENSRNOT00000013369 2 1 1 80 X 15622367 15622385 TTTGATACGCAGTCCAAGG 58 15622222 15622326 GCTGAAGTTAATGCAGTATAGG 57 NA Rattus norvegicus 81 Ncapg ENSRNOG00000038572 ENSRNOT00000058838 3 1 1 80 14 69905028 69905047 GCTTGTTGATCTGACAAGAC 57 69903552 69904986 TCATGTACTGTTAAGGCCTG 57 NA Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000088320 2 1 2 80 8 55505670 55506234 GTGCTGTAGGTATGGTGAG 57 55506277 55506296 TGAGCTAATTCCCAGTTCTC 57 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 2 3 3 86 7 107198092 107203731 AGTTAAAGTGGTTGGATGGC 59 107198025 107198044 TGATTTGCTGTTCAACTGCT 59 NA Rattus norvegicus 81 Sap30 ENSRNOG00000013218 ENSRNOT00000017652 2 1 1 80 16 36118400 36118418 CAGAAGGAAGAGGAAAGGG 57 36118460 36118827 TACAAATCAACCTCTGGAGTG 58 NA Rattus norvegicus 81 Thyn1 ENSRNOG00000047053 ENSRNOT00000073373,ENSRNOT00000085997 3 2 2 80 8 28050214 28051622 GTATAGACATGAAGTTCAGCATCG 60 28051660 28051679 GATAGTTGCGAACACCATCC 59 NA Rattus norvegicus 81 AABR07062266.1 ENSRNOG00000049892 ENSRNOT00000073394 2 1 1 61 4 166602670 166602690 AAGAATCTGATAGGTGGAGGA 58 166602713 166602744 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC102557117 ENSRNOG00000047922 ENSRNOT00000030857 1 1 1 80 5 187369 187388 CTGGATCCTTCACAGAAGAG 57 187428 187640 CCAATTGTAACCTATAGCAGTG 57 NA Rattus norvegicus 81 Ptprk ENSRNOG00000047605 ENSRNOT00000020988 1 1 1 80 1 17464465 17464483 GAGAATGGTATGGCAGGAG 57 17463790 17464422 TTATAGCATTTCACCCGACC 58 NA Rattus norvegicus 81 Zc3h12c ENSRNOG00000012470 ENSRNOT00000080043,ENSRNOT00000016637 2 2 2 80 8 56656841 56656859 GCCACAAAGATATCACGGT 58 56646490 56656799 TTTCCTGATCTGTGATAAGGG 57 NA Rattus norvegicus 81 Vom2r16 ENSRNOG00000054736 ENSRNOT00000080747 3 1 1 80 1 62848043 62848062 ATTCAAGTGGGAAACAGCTC 59 62848105 62851634 ACACAGAAGATGGCATCTG 58 NA Rattus norvegicus 81 Cxcl16 ENSRNOG00000026647 ENSRNOT00000032926 3 1 1 80 10 57063702 57063934 TTCTTTATCAGGTTCCAGTTGC 59 57063643 57063661 GCAGTTCACTAGTTCACGG 59 NA Rattus norvegicus 81 Sp110 ENSRNOG00000033747 ENSRNOT00000056995 2 1 1 80 9 92602011 92603259 CATAAGATGATGGGAGTGGC 58 92601950 92601968 CTGATTCAGAGTCCTCTGC 57 NA Rattus norvegicus 81 Zfp110 ENSRNOG00000031328 ENSRNOT00000026298 1 1 1 80 1 65754795 65754816 TCAGTTAGAAGAAGCAGAAGAC 58 65747377 65754754 GAAGGCCCAGAACATTCTG 59 NA Rattus norvegicus 81 Oaf ENSRNOG00000009243 ENSRNOT00000012826 3 1 1 129 8 47513968 47513987 CCGTTAACTTCAGTCAGGGA 60 47512649 47513876 ACAGAACTGTCCACACCTC 59 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302,ENSRNOT00000027271 2 2 2 80 5 137053202 137053221 GCAATGAAGACATCTGTGCT 59 137052956 137053162 ATTGTACAGGATCTTGAAGGGT 59 NA Rattus norvegicus 81 rno-mir-3543-1 ENSRNOG00000050253 ENSRNOT00000062188 3 1 1 60 6 133716284 133716303 GTTCAAACCACGAGTTTGAC 58 133716243 133716261 TCTTGGTTTGAACCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 1 2 2 80 2 122504605 122507153 CATGACAGAGTTAGGATGTGAC 59 122504546 122504567 CCTGGTTCTTTCAATTCTTGCT 60 NA Rattus norvegicus 81 Cdc5l ENSRNOG00000019975 ENSRNOT00000027264 2 1 1 80 9 17954962 17956200 ATGGATGAGGATGAACTTGAG 58 17956240 17956260 TTTCCTCTTAGCCTTCTTTCC 58 NA Rattus norvegicus 81 Rgs16 ENSRNOG00000027024 ENSRNOT00000032236 3 1 1 98 13 71181675 71181693 AGAAGATCCGATCAGCCAC 59 71181749 71183322 CGTGATCTATGTTTACCTCTTTAGG 59 NA Rattus norvegicus 81 Rbmxl1b ENSRNOG00000059347 ENSRNOT00000081688 1 1 1 89 4 42186957 42186975 TTCTACAGCAGTTCAAGCC 58 42186885 42186903 CTAGAATCTGCTTCTGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 1 2 2 80 1 201475939 201477154 ATCATCTTCTATGCGGCAG 58 201478412 201478431 TTTGGATTCTGAAGGACAGC 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 3 2 2 80 1 201475937 201477152 TCATCATCTTCTATGCGGC 58 201478411 201478429 TGGATTCTGAAGGACAGCT 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853,ENSRNOT00000049855,ENSRNOT00000045393 1 3 3 80 3 128929360 128929378 TGATCGGACATTTGATCCC 57 128929420 128930509 CCTGATATAACCTGCACTGAG 58 NA Rattus norvegicus 81 Dmp1 ENSRNOG00000002167 ENSRNOT00000061224 2 1 1 131 14 6896780 6896798 CTCCTTACGTTCCTCTGGG 59 6892317 6894171 GTCACTATTTGCCATGGGC 59 NA Rattus norvegicus 81 AABR07055413.1 ENSRNOG00000049415 ENSRNOT00000071785 3 1 1 83 7 2300749 2300830 TTGAACAGGACTGTGTCTC 57 2300877 2300895 GAAGGCAGCTAGAGATGTG 58 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 2 3 3 80 4 165986751 165988390 ATGGCTCAGATGAAGAGGTC 59 165985857 165985876 GACCATGTTTCTGGTTCTGC 60 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 3 2 2 80 7 119707325 119707348 CTCACTACGTTAATCCATACTTGG 59 119706733 119707287 TGAATACGGATGCATCCTCC 60 NA Rattus norvegicus 81 Hoxc12 ENSRNOG00000016116 ENSRNOT00000021580 3 1 1 101 7 144548502 144548520 GGTATCTCCGTTGAACCCA 59 144549341 144549359 AACTTCGAATACGGCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 2 1 1 80 2 140588902 140588925 CCACTTTGATAAATCGACTTCCTC 60 140586240 140588864 ACATAAACCCTCTCGGACTC 59 NA Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 3 1 1 80 2 140588901 140588924 CACTTTGATAAATCGACTTCCTCC 60 140586239 140588864 AACATAAACCCTCTCGGACTC 60 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 2 2 3 80 1 82898409 82898428 AGTCCAACCTTGTTCTATGC 58 82898069 82898366 AGATACTGAGGCTACCTCC 57 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 3 2 3 80 1 82898408 82898427 GTCCAACCTTGTTCTATGCC 59 82898068 82898366 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Atp5j ENSRNOG00000001551 ENSRNOT00000002116 1 1 1 107 11 24287378 24287396 ATCAGCAAGAGGTGGACAG 59 24286912 24287310 GGACTTCAAATTTGGGATCCTC 59 NA Rattus norvegicus 81 Ccdc103 ENSRNOG00000002905 ENSRNOT00000003890 3 1 1 85 10 90985987 90986385 CTATGAGGAGTTCAGAGGGA 58 90986432 90986451 ACACAAATCTCCTTCCTCCT 58 NA Rattus norvegicus 81 Dusp9 ENSRNOG00000055185 ENSRNOT00000087962 1 1 1 89 X 157169925 157169943 TCCACTACAAGCAGATCCC 59 157169586 157169873 AGGCCTCATCTATGAATGCA 59 NA Rattus norvegicus 81 Crip2 ENSRNOG00000005041 ENSRNOT00000006804 2 1 1 106 6 137956696 137956714 GCTGCAACAAGACACTGAC 60 137956783 137957035 GATATTCACGCCTTTGGGTC 59 NA Rattus norvegicus 81 Samd4b ENSRNOG00000019831 ENSRNOT00000026839 1 1 1 80 1 85357959 85359899 TCATGTTCCCTCCAGACTG 59 85359942 85359961 TCATGCTCAGACACAGAGAC 60 NA Rattus norvegicus 81 AC126960.1 ENSRNOG00000039860 ENSRNOT00000031118 2 1 1 80 4 26253506 26254143 AACTTCTATCGTAACCTGCAC 58 26253446 26253464 CTCCTGCTTCAGTTTGACC 59 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 1 2 2 80 2 207368564 207375751 AGAGTTAAACAATGACTGTGCC 59 207375789 207375810 AACCTTTCAGCATCTACAATGG 59 NA Rattus norvegicus 81 Arrb2 ENSRNOG00000019308 ENSRNOT00000026207 2 1 1 80 10 57045510 57045827 AGTGTCTGTGAGACAGTATGC 60 57045869 57045887 TCTTGTTCAAGCTGAGCCA 60 NA Rattus norvegicus 81 Vhl ENSRNOG00000010258 ENSRNOT00000013727 1 1 1 80 4 145584479 145585516 ATCACATTGCCAGTGTATACC 58 145585558 145585576 CCTCCTGTAGTTCTCAGGC 59 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 1 2 2 80 5 135363565 135366388 TGCAGTAGGTGGATACACG 59 135366430 135366450 GTATCGAAACGCTCTACACAG 59 NA Rattus norvegicus 81 Olfml3 ENSRNOG00000019211 ENSRNOT00000026075 1 1 1 82 2 206221243 206221261 ATGAGAAGGTGACTGGAGG 58 206220686 206221198 GTAGCTACAGTCTGTCACCA 59 NA Rattus norvegicus 81 Tm4sf5 ENSRNOG00000019510 ENSRNOT00000026437 1 1 1 88 10 57117473 57117706 CTTCCAAGAAACCCAAGGC 59 57117758 57117776 TCACATTCCAGGGTACCAC 59 NA Rattus norvegicus 81 Ict1 ENSRNOG00000032780 ENSRNOT00000045875 2 1 1 82 10 103961976 103962235 CTTCAGAGACTCAGGATTGAG 58 103962278 103962297 CTCCTGCTTGTCTTTATGGT 58 NA Rattus norvegicus 81 Ankub1 ENSRNOG00000043466 ENSRNOT00000057909 1 1 1 87 2 147805168 147805186 GTCTACTGTCTCCGGACAC 59 147800256 147805118 GAAGTGTTGTGCCGATATCC 59 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 2 2 2 80 14 7205015 7206509 CTCTGTGGAAGGGAAAGTG 58 7206553 7206571 AGAGGGTCAAACATCTCCA 58 NA Rattus norvegicus 81 Zfp3 ENSRNOG00000005009 ENSRNOT00000006641 1 1 1 283 10 57386705 57386723 TGAATTAGGGCGAGAGCAG 60 57392763 57392781 ATGTCTTCCTTGGGAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC685881 ENSRNOG00000051000 ENSRNOT00000074294 2 1 1 60 6 24562945 24562963 TCCTGCTCATGATACTGGG 59 24562903 24562921 GACACCAGGTAGACCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eppin ENSRNOG00000028908 ENSRNOT00000019829 1 1 1 97 3 161048718 161048736 CTTTGTACCAGGGACAGGG 60 161045051 161048659 AGGCTGCAAATATCTTGTTGG 59 NA Rattus norvegicus 81 AABR07065923.1 ENSRNOG00000005826 ENSRNOT00000007683 1 1 1 60 6 146394926 146394944 TAAGACCAAGGAAGCACGA 59 146394968 146394986 GATCTCCTCCTTCTTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh18 ENSRNOG00000009949 ENSRNOT00000013343 1 1 1 80 2 138829941 138830051 CCAGGAGCTATAGATATGCCC 59 138829881 138829900 CTCCTGCTTCACTATCTCCA 59 NA Rattus norvegicus 81 Vom2r67 ENSRNOG00000031928 ENSRNOT00000061889 1 1 1 80 14 1321538 1321558 TCAGAAAGAAACAGCAGACTG 59 1321597 1322767 TCCATATCTGCTGTATCATTGG 58 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000086413 3 1 2 81 20 5107850 5107870 GAAATTCCATAATGAGGGCCT 58 5107308 5107808 CGAACCTTAACATCCTTCCC 58 NA InUTR Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095,ENSRNOT00000061921 3 2 2 80 6 6966157 6967828 TTACCAGATGGCTCAGATACC 59 6967871 6967890 GATTTCACCTTTGTCAGCCA 59 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 3 2 2 80 10 70515858 70515876 TTTGAGGTGGTAGCACAGG 60 70515534 70515816 TGATTCTGCAAGAACCTTGAC 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 3 2 2 80 10 89949750 89949768 AATCCCAGGGATCCATCAC 59 89946490 89949706 GCATGAACACCTTGCTCTC 59 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 3 2 2 80 2 96500106 96500127 GCACGTATTAGTAATAAGGGCA 59 96498493 96500066 CGGAGATGGCTTATACTGTG 58 NA Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 3 1 1 80 11 16882119 16886328 CAAGCCTACAGATGCATTCG 60 16882058 16882076 GATGCAGCTGTTCTCACAG 59 NA Rattus norvegicus 81 Gpr45 ENSRNOG00000016446 ENSRNOT00000021999 1 1 1 60 9 49839040 49839058 CCTGTGGCTCAGTTACCTC 60 49839080 49839100 TTTGATCCTCCAGCAGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr45 ENSRNOG00000016446 ENSRNOT00000021999 2 1 1 60 9 49838229 49838248 TGATGCTGCTGATGATTGTG 59 49838271 49838289 TACACGATGATGCAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2rl3 ENSRNOG00000048186 ENSRNOT00000072664 2 1 1 68 16 18819728 18819748 AGCATCTACGACGATGTAGAG 59 18819380 18819398 AAGTTCTACTGTGGGACGC 60 NA DesignNoJunction Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 2 2 2 88 4 170161996 170162975 TTTGATGCCGTCAAGAACG 59 170161926 170161945 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Olr879 ENSRNOG00000043438 ENSRNOT00000064380 2 1 1 60 7 3706546 3706565 GAACCATCCTCAGATTCCCA 59 3706505 3706526 GAAGAACAAGTAGAGAAAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk25 ENSRNOG00000018181 ENSRNOT00000024487 3 1 1 80 9 100770045 100770064 TGAGCCTATCAAGAGACAGC 59 100769084 100770003 TGCTTCTCTTTGAGCTCTCC 60 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 1 2 2 80 11 27237362 27237382 TAAACAGCACTGCCAAATAGC 60 27237423 27250680 AGCTCCTTCTTCCTTTCCTC 59 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 1 2 2 96 20 5115205 5115778 AGAACCAGAACCGATCACC 59 5115838 5115856 AGGTGAGCAGTAGATGTGC 60 NA Rattus norvegicus 81 Grk5 ENSRNOG00000011439 ENSRNOT00000015687 3 1 1 80 1 282354467 282354488 CAAGAAGTGGAAGGAAATCCTG 59 282354523 282396519 TAGTAATCTCTGTCTATGGTTCTCC 59 NA Rattus norvegicus 81 Smap1 ENSRNOG00000049127 ENSRNOT00000071330 3 1 1 80 9 30107324 30122516 ACCAGAACAGATACAGTGCA 59 30107263 30107283 AAGTTCTCTGGAAGATTGGCT 60 NA Rattus norvegicus 81 LOC100912512 ENSRNOG00000016653 ENSRNOT00000022485 1 1 1 80 9 94574759 94576538 CAAGGAGCTAGAAATGGTGG 58 94574698 94574719 TGAATGCTGATCATCTGTTCTG 59 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 1 2 2 88 5 136704961 136705436 TGTCAGACACCTGAGAAGC 59 136704559 136704577 GCTCCATTTCCAGACAGTG 59 NA Rattus norvegicus 81 C1rl ENSRNOG00000011718 ENSRNOT00000015678 3 1 1 80 4 157120558 157120671 AAGGAAGAACAGACAGGGAC 59 157120713 157120732 CTCAGGAACCTCTTCTCCAC 60 NA Rattus norvegicus 81 Pign ENSRNOG00000014866 ENSRNOT00000020752 1 1 1 80 13 25575870 25577071 TTGATGACGTAGTGTCCCTC 59 25575809 25575832 GTCTGTCGTAAGTGTGATAATAGG 59 NA Rattus norvegicus 81 Otud5 ENSRNOG00000008764 ENSRNOT00000006233 1 1 1 80 X 15472593 15472611 CTCTTGTGTCCCTCTACCC 59 15472252 15472550 AATCATTCAGACCAAAGGCA 58 NA Rattus norvegicus 81 Elp6 ENSRNOG00000020847 ENSRNOT00000028288 3 1 1 82 8 118535859 118539824 GCGAACTGAAGGGAAATGTG 60 118539864 118539887 GCCATTCAGTAGGATGTTATTCTC 60 NA Rattus norvegicus 81 Prss2 ENSRNOG00000045612 ENSRNOT00000029319 1 1 1 90 4 70625783 70626164 TCTTGGTGTGAACAACCCA 59 70625711 70625730 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 1 3 3 80 1 87004746 87005047 AGATGAATGTCTGTGTCTCC 57 87005090 87005108 TGTAACTGCAAGATCCGTC 58 NA Rattus norvegicus 81 Bccip ENSRNOG00000018066 ENSRNOT00000024355 1 1 1 80 1 205777589 205777608 GAGGATGAGGAAGAAGACGA 59 205777650 205782879 ATTCACTTCCTCATCCACGA 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 3 2 3 125 2 208131872 208131890 ATGAAGCTCTGGAGCTGAC 60 208132308 208134870 CAATAAACTCGTGGTTAGTGGTC 60 NA Rattus norvegicus 81 Trio ENSRNOG00000012148 ENSRNOT00000016784 3 1 1 80 2 80593742 80593760 GGAACGCAAGATCAAGCTG 60 80590318 80593699 TCAAGGTCCGAGATGATGTC 59 NA Rattus norvegicus 81 Cbwd1 ENSRNOG00000015516 ENSRNOT00000021185 3 1 1 81 1 242856203 242858242 AATGAATTTGGAGAAGGGAGTG 59 242856143 242856164 GTTCCAGCCATTCTTCATAGAG 59 NA Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 3 1 1 80 1 248447926 248457948 TTGATCCATGCAGCAACAG 59 248457991 248458010 TGAAATGTGAACGCTTTGCT 59 NA Rattus norvegicus 81 Krtap2-4l ENSRNOG00000056967 ENSRNOT00000071705 3 1 1 138 10 87521535 87521553 GATCCTTCTCCTCCCAGAG 58 87521415 87521434 CAGATGGGCCTAGTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f7 ENSRNOG00000026252 ENSRNOT00000031986 3 1 1 81 7 53294806 53294824 AGGAAAGATGGGTCTCCAG 58 53294869 53296257 TGTTTGCAGATGAAGAGGG 58 NA Rattus norvegicus 81 LOC100359763 ENSRNOG00000013191 ENSRNOT00000017602 2 1 1 60 7 93376582 93376600 CAAGCTGGTTTCAAAGCAC 58 93376623 93376642 ATCTCCACCCTTTGTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049783.1 ENSRNOG00000049373 ENSRNOT00000072631 3 1 1 60 5 137708841 137708861 ATTCTGGATATGGGCTATGTC 57 137708883 137708901 CACAGACCAGATGTACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plbd1 ENSRNOG00000008933 ENSRNOT00000011930 2 1 1 80 4 170591277 170591296 TGGGACTTCAACATCAAGGA 59 170569673 170591235 CAGAGACTCCAAGAACCCTG 60 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 2 2 2 80 8 40004702 40007172 GACCAGCCTTAGATACCGT 59 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 Crhbp ENSRNOG00000017890 ENSRNOT00000024191 3 1 1 80 2 25153188 25153207 AACTTCAAACTCCAATGCCA 58 25152790 25153146 TTCTTGCACCTCTAGGTAGC 59 NA Rattus norvegicus 81 Elmod1 ENSRNOG00000009054 ENSRNOT00000012041 3 1 1 80 8 58500951 58500969 CTTCCAAGGTGATGATCCG 58 58499388 58500907 CGTTCTGCGAAATATTGCA 57 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355 1 1 2 88 3 143804039 143804058 GCTACAAGATGACCAATGCA 59 143803890 143803991 ACAATCCATGAATCTTCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760,ENSRNOT00000011890 1 2 2 80 2 100233045 100236019 TTTGCTTCTGGGAAACCAC 59 100232983 100233002 TCAAGAACTCTATTGGCCAC 58 NA Rattus norvegicus 81 Slc20a1 ENSRNOG00000018567 ENSRNOT00000025294 3 1 1 80 3 121735570 121735694 ATGGTACTATCAATGGTGCAG 58 121735736 121735754 AGTTGATCTGGTTGCTGAC 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 3 2 2 105 9 99821634 99821652 TGCACTTGGTAAGGATGCA 60 99820730 99821415 TTGGGATCTGCTTCCTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ckap2l ENSRNOG00000026143 ENSRNOT00000039794 3 1 1 83 3 121804886 121804905 GTTACTGGCAAGTAAAGGCC 59 121799990 121804840 AGCTCCTGTATTGGTGCTG 60 NA Rattus norvegicus 81 AABR07011278.1 ENSRNOG00000046074 ENSRNOT00000075563 2 1 1 80 2 160291875 160291893 GAAACTACTGGCTGACCAG 58 160292210 160292228 GTGGGTACTTGTTCCTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000018854 2 1 2 87 16 23972369 23984541 CTTGTGCAATTGACTGGGAG 60 23972301 23972321 GGCCAAGTCCAACTTATTCAC 60 NA InUTR Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 1 2 2 80 8 85437470 85442944 GGGAGGTTAAGTCTTTAAAGAAGC 60 85442983 85443001 AGAGATGGTCGTTCTCCCT 60 NA Rattus norvegicus 81 Bad ENSRNOG00000021147 ENSRNOT00000028712 1 1 1 81 1 222206395 222206954 TTCCTTCAAGGGACTTCCTC 59 222206998 222207016 GATAATGCGCGTCCAACTG 60 NA Rattus norvegicus 81 AC118490.1 ENSRNOG00000010101 ENSRNOT00000013395 3 1 1 85 3 75414689 75414712 GCTTGGCCATTCTGTATAAGAG 59 75414756 75414776 AATAGCTCTGTCACAGTCTCG 60 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 1 3 3 80 3 134293428 134293450 TATTATCTAGCCGAGATGTACGC 60 134292330 134293391 GACTCCTTTATAAAGCTCCACG 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 3 3 3 80 3 134293428 134293446 ATCTAGCCGAGATGTACGC 59 134292326 134293388 CACAGACTCCTTTATAAAGCTCC 59 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 2 1 1 146 7 74990054 74990073 ATGTTCAACCACCAAAGCAG 59 74990516 74992339 AAACCACCAATCTCTTAGTCCT 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 2 2 2 80 8 21518761 21518781 CATTCCTAGTCTGACTCCCTG 59 21517638 21518719 TGCAGTTCCAATTGCTGAG 59 NA Rattus norvegicus 81 Gca ENSRNOG00000007359 ENSRNOT00000009697 1 1 1 80 3 48649041 48649059 TGAGGTGGATGCTGAAGAG 59 48649102 48654722 GTTTCCAAGCTGAAAGGAGC 60 NA Rattus norvegicus 81 Pced1b ENSRNOG00000022807 ENSRNOT00000037874 3 1 1 84 7 138739127 138739145 CTCAGATCCCAGAGGACAC 59 138739193 138742250 GTCCGGTTCATTCCTACGT 60 NA InUTR Rattus norvegicus 81 Muc16 ENSRNOG00000039931 ENSRNOT00000061339 3 1 1 80 8 18489326 18489349 CTCTATGTGAATGAAGACAGTCTC 59 18479452 18486747 TGTGTCAGGATTTATGGTTGG 58 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 3 1 1 86 10 17409694 17415131 AGGAACACCTTGAATGATGTG 59 17409628 17409652 GTCGAATATCATCTTGATCTGTGAG 60 NA Rattus norvegicus 81 Junb ENSRNOG00000042838 ENSRNOT00000067780 1 1 1 60 19 26094384 26094404 CTCTTCACGACTACAAACTCC 59 26094344 26094362 CGATAAGGATCTGCCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a4c ENSRNOG00000020997 ENSRNOT00000033613 3 1 1 80 1 227655098 227656557 CAAAGAGCCTGGTCATCAG 58 227656601 227656619 CAACACCCATTATGCTTGC 58 NA Rattus norvegicus 81 Col4a3bp ENSRNOG00000015686 ENSRNOT00000021549 3 1 1 80 2 27425833 27425855 CTCTGCAGAAGTACTTTGATGTC 60 27425891 27434587 CATCGTCTTCTACCACTTTATCC 59 NA Rattus norvegicus 81 Ston1 ENSRNOG00000016688 ENSRNOT00000022370 2 1 1 81 6 12374560 12378092 AAACACAAGTCCCGATCAG 58 12378136 12378155 ATCCCAATCTGAAGGAACCT 59 NA Rattus norvegicus 81 Dgkq ENSRNOG00000024112 ENSRNOT00000032056 2 1 1 80 14 2074326 2074420 ACGATTATGACACGTATCACCA 60 2074459 2074479 AAGTCTTCCTACAGACCTCAC 59 NA Rattus norvegicus 81 Dgkq ENSRNOG00000024112 ENSRNOT00000032056 3 1 1 80 14 2075857 2075876 TGTGAACTCCCAGAGTACAG 59 2075918 2076069 CTCTCCTGATCCTCAACCTG 59 NA Rattus norvegicus 81 Olr442 ENSRNOG00000033543 ENSRNOT00000041926 1 1 1 60 3 72818024 72818045 TCTGAGGAGAATATGAAAGTGG 57 72817985 72818003 GGTTCAGCATGGGAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC118147.2 ENSRNOG00000060693 ENSRNOT00000087411 1 1 1 80 1 88132244 88132262 CCTTGCTACGACATCATCC 58 88132076 88132202 GTCTACACCTCTATTGCTCAC 58 NA Rattus norvegicus 81 Mtmr10 ENSRNOG00000016090 ENSRNOT00000021530 3 1 1 80 1 125154699 125154799 AAGAAGAATGCCATGCTGG 59 125154842 125154861 TGCAGCACATCTTTGATGAG 59 NA Rattus norvegicus 81 Psmg1 ENSRNOG00000001643 ENSRNOT00000002242 1 1 1 80 11 36330321 36330339 GTTGGACCTTGTCACAGTC 58 36327973 36330277 TCAGGGATGTTCTTCACCA 58 NA Rattus norvegicus 81 Cwf19l1 ENSRNOG00000012763 ENSRNOT00000017202 2 1 1 80 1 263908544 263909289 GAACTTTGATCTGCTGTTGTG 58 263908484 263908503 CTGCCAGTCCTATACTCCTC 59 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 2 2 2 80 2 206076486 206076504 ACAATCTCTTCGAGGCCTC 59 206076547 206109302 CCACACTTTCACTAGTAGCG 58 NA Rattus norvegicus 81 Pth1r ENSRNOG00000020948 ENSRNOT00000028435 2 1 1 82 8 118989360 118989379 TGAGATGCTCTTCAACTCCT 59 118988588 118989237 TAATCTCTGCCTGCACCTC 59 NA Rattus norvegicus 81 Cnot7 ENSRNOG00000012263 ENSRNOT00000016882 3 1 1 80 16 54901060 54901080 GCTTGTAACCTGGATGAAGAG 59 54901122 54903297 AAACTCGGTGTCCATAGCA 59 NA Rattus norvegicus 81 Rrm2b ENSRNOG00000025454 ENSRNOT00000033704 1 1 1 80 7 76774739 76774759 TCCAGTACCCTGATATTTGGA 58 76763178 76774697 CCTTGGACAAGTCAACCTC 58 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157,ENSRNOT00000088824 1 2 2 80 9 38342985 38343003 CAACTCTACTTCCAGCTCC 57 38343047 38344622 CTCTCAATCGTGAACTGCT 58 NA Rattus norvegicus 81 Apoa1 ENSRNOG00000045679 ENSRNOT00000074357 3 1 1 87 8 50525606 50525624 TGGATGCAGTCAAGGACAG 60 50525674 50526242 TCCAGGAGATTCAGGTTCAG 59 NA Rattus norvegicus 81 Zfp451 ENSRNOG00000012718 ENSRNOT00000017022 3 1 1 81 9 38430517 38431078 AACTGGGTGACGATAAGGG 59 38431123 38431141 TCTTTGCACAGAGACACCA 59 NA Rattus norvegicus 81 AABR07061614.2 ENSRNOG00000053654 ENSRNOT00000088301 3 1 1 60 4 136228549 136228568 CCTCAAGGATCTTACACGGA 59 136228505 136228524 AAGTCTTTCAGCTTCTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006,ENSRNOT00000090755 3 2 2 88 1 263917747 263917765 CTCACGAGCTTGAAGTACC 58 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 AABR07055492.1 ENSRNOG00000056878 ENSRNOT00000077369 1 1 1 82 7 4127104 4127122 AAGCCATCAACACCAAGGT 60 4127039 4127057 GAGCTAGGTCCTTTGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Siah1 ENSRNOG00000015143 ENSRNOT00000020329 1 1 1 60 19 21394318 21394337 ACAAGTCCATTACCACCCTG 60 21394358 21394378 AGGTTAATGTCTGTAGCAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043748.1 ENSRNOG00000046621 ENSRNOT00000072666 3 1 1 60 19 38343930 38343949 AGTTGCGAAAGGTGAAAGAG 59 38343889 38343907 TGCTTACTCTGCTCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1d ENSRNOG00000048485 ENSRNOT00000057258 2 1 1 80 12 42372521 42372539 AACACTTCCTGAAGCATCC 58 42369440 42372480 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837,ENSRNOT00000080699 1 2 2 95 2 104952163 104952433 GATGCAGATACTCTGGTTCTC 58 104952088 104952106 ATTGAAACAGTCAGGCCAC 58 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837,ENSRNOT00000080699 3 2 2 97 2 104952163 104952433 GATGCAGATACTCTGGTTCTC 58 104952086 104952105 GAATTGAAACAGTCAGGCCA 59 NA Rattus norvegicus 81 Rpgrip1l ENSRNOG00000011829 ENSRNOT00000015876 1 1 1 80 19 17138781 17140740 CTTCAAGAGAAGCAAAGAACAC 58 17140779 17140799 CTTAAGCTGCATGTTTAGCTC 58 NA Rattus norvegicus 81 Fam189a1 ENSRNOG00000023496 ENSRNOT00000031488 3 1 1 88 1 125648316 125648334 GTGTGATGCTCAACTTGGC 60 125615664 125648265 AAACTTGATCAACTGGCAGC 60 NA Rattus norvegicus 81 Nit1 ENSRNOG00000003881 ENSRNOT00000005194 2 1 1 80 13 89724459 89724477 GAGACATTACTCCTGTCCG 57 89724293 89724415 CCAGATTCCACATTCCCTG 58 NA Rattus norvegicus 81 LOC100362981 ENSRNOG00000034226 ENSRNOT00000047211 3 1 1 132 8 33120952 33120970 CTTCATTGTCTGTGGGACC 58 33104775 33105690 GATGAGGGACCAGTAAATGTG 59 NA Rattus norvegicus 81 Klf4 ENSRNOG00000016299 ENSRNOT00000022255 1 1 1 88 5 72285503 72285521 CTTGTGACTATGCAGGCTG 59 72284316 72285451 GTAAGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Wiz ENSRNOG00000006217 ENSRNOT00000008303 3 1 1 80 7 14380085 14381995 CGCTGAATCTCACTTCAGG 58 14380023 14380044 CCTTTCTGTTCTCAAAGAACTC 57 NA Rattus norvegicus 81 Myl12b ENSRNOG00000015733 ENSRNOT00000048125 1 1 1 124 9 119311097 119321423 CAGGTCAGATTTGAACCGC 59 119310991 119311009 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 Rbpjl ENSRNOG00000026295 ENSRNOT00000019127 2 1 1 80 3 160860143 160860161 AGGTTACATCCGCTATGGT 58 160860203 160860498 TTTCGGATGATCATAGGAGGA 58 NA Rattus norvegicus 81 Smchd1 ENSRNOG00000014319 ENSRNOT00000019359 2 1 1 80 9 119698502 119698523 ATTTAAAGAGACCCAGCTACGA 59 119697231 119698464 TCAATGTGAGGTATCTGTTGTG 59 NA Rattus norvegicus 81 AABR07006542.1 ENSRNOG00000021811 ENSRNOT00000029774 1 1 1 60 1 239319414 239319433 TGAAGGATGGGAAGATGGTG 60 239319373 239319393 TAGACCCGAGTACAGATAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp21 ENSRNOG00000038347 ENSRNOT00000058390 1 1 1 80 13 89655466 89655697 ACAATGACTCCCGTGTCTC 59 89655404 89655424 GCATCAATTGGTAGAACAGCA 59 NA Rattus norvegicus 81 Usp21 ENSRNOG00000038347 ENSRNOT00000058390 3 1 1 80 13 89657840 89658038 CCTTCTCTGGATACAGCCAG 60 89657779 89657797 GTCGGTTGATTTCGAGGTG 59 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 1 2 2 88 7 2824135 2824306 GATTGGAGAATTCTGCATGGT 59 2824067 2824085 ATTTGTTGGATGCCTGCTG 59 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 1 2 2 88 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476585 63476603 GAAGGTGATGCTAAGCAGC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888,ENSRNOT00000091626 2 2 2 82 19 19267460 19267478 GAGAGTGCTATGATGACCC 57 19267142 19267414 ATGAAGGTGAACCTGAGTG 57 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 3 2 2 123 7 59302553 59304080 GTCTTGAAGCGAGGAAGTC 58 59304167 59304185 TGTCTTCCTCTACGTCCAG 58 NA Rattus norvegicus 81 Plekha3 ENSRNOG00000011830 ENSRNOT00000016132 1 1 1 80 3 63548012 63548032 CAGCAGGTTCATACAATCCAG 59 63548070 63549078 GGCTTCATTCATGTTCTCTACAC 60 NA Rattus norvegicus 81 AC109707.1 ENSRNOG00000049527 ENSRNOT00000050715 1 1 1 69 13 31752889 31753063 GGCAATCATAGTGGAAGCA 58 31752838 31752857 ACTGGTTGTTGTAATTGCCA 58 NA DesignRelaxed Rattus norvegicus 81 Mrps11 ENSRNOG00000018531 ENSRNOT00000025008 3 1 1 85 1 140478231 140483146 TCGCTTCAGCATTTACCCT 59 140483195 140483213 GTGCAATTGGGACTTCCTC 59 NA Rattus norvegicus 81 Il21 ENSRNOG00000017376 ENSRNOT00000023348 1 1 1 80 2 123972254 123972274 TTCTGATTAGACTTCGTCACC 58 123972079 123972215 TTAGAAGTTCAGGATCCAAGTC 58 NA Rattus norvegicus 81 Rn60_10_0876.8 ENSRNOG00000059238 ENSRNOT00000086748 3 1 1 60 10 87797973 87797992 TCCCATGTAAACACCAACAC 58 87798014 87798033 TTGGTCTGATATGACAAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 2 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726067 TTCTCTGCTGCATAGTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043,ENSRNOT00000032299 3 2 2 80 5 73926628 73927443 TTCATACCATCAGCTTTGGC 59 73926567 73926585 TAGAACTGCAGGTACTGCT 58 NA Rattus norvegicus 81 Wfdc8 ENSRNOG00000014771 ENSRNOT00000055160 1 1 1 83 3 161064488 161064506 CAGACTTCAACTGTGAGGC 59 161062136 161064441 GGCAGGGTTCTTCATAAGG 58 NA Rattus norvegicus 81 Pi4k2a ENSRNOG00000014675 ENSRNOT00000019874 1 1 1 80 1 261358253 261358274 TTCTTCCAAAGATTTCAGACCC 59 261358312 261358809 AACCAGGATCTTTCTTGAAGAG 58 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 1 1 1 86 3 137632429 137632447 GCCAGAAGGATTTCAAGGG 59 137632358 137632382 TAATAGGTGTAGCCATCTTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000086962 1 1 2 82 5 62141319 62151147 AAAGGCTCAAGGTTTCTGC 59 62141255 62141278 CTCTTCATCAAGGAGTAATCTGAG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940,ENSRNOT00000091355,ENSRNOT00000078354,ENSRNOT00000079962 2 5 5 80 7 80780605 80780626 CCGTTTAAAGTAAGTGATGGCT 59 80780664 80782242 CTTGAAGACCTCAAATTCTGGA 58 NA Rattus norvegicus 81 Pnrc1 ENSRNOG00000007793 ENSRNOT00000010271 3 1 1 104 5 48503991 48504009 CCCTGCTATACAGACAGCC 60 48502478 48502497 GTATACCATGCACAAGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100361644 ENSRNOG00000029988 ENSRNOT00000046772 3 1 1 61 2 23260737 23260760 CACTCAAGTTTATCAAGAAGAGGG 60 23260699 23260718 CTCCTCCCTCTTTCTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007703.1 ENSRNOG00000059441 ENSRNOT00000078413 2 1 1 83 2 25007286 25011340 CTTCTGGGATAGACTGGGC 59 25011387 25011405 TACGCTGGAGCAATAGTGG 60 NA Rattus norvegicus 81 Plekhg1 ENSRNOG00000016011 ENSRNOT00000021471 1 1 1 80 1 40472811 40485166 TTGTGTCCAAGAGTGAAGAG 58 40489379 40489397 ATTCAGTTAGCACAGCCAC 58 NA Rattus norvegicus 81 Zfp763 ENSRNOG00000057416 ENSRNOT00000081512 1 1 1 86 7 15300095 15301021 AATCTGCGAACTCAGACGA 59 15300027 15300045 ATATCCTGGAATCCGGTGG 59 NA Rattus norvegicus 81 Baat ENSRNOG00000007395 ENSRNOT00000009777 3 1 1 80 5 64769233 64771242 CTGAGACATCCTAAGGTCCT 58 64769172 64769192 AGCCATAGAAAGTCCAATCTC 58 NA Rattus norvegicus 81 AABR07037570.1 ENSRNOG00000024298 ENSRNOT00000030377 2 1 1 60 X 24117788 24120413 AAGATTTGCAGGAGTGAAGGA 60 24117748 24117769 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 1 1 1 84 8 55604077 55623349 AATCCACAGCTTCAGAGCA 59 55623397 55623415 CTCAGTAGCTCCTTCACCG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07052807.1 ENSRNOG00000047074 ENSRNOT00000007835 3 1 1 83 3 76314617 76314641 GGGATCATTCTCCTACTATATTGTG 59 76314557 76314581 GATCATGACTGTATAAAGAGCGAC 60 NA Rattus norvegicus 81 Nup107 ENSRNOG00000006541 ENSRNOT00000009203 1 1 1 80 7 60805420 60806224 AACGTGAATGGAGGGACAG 60 60805358 60805380 CATTCTCCAGCAACTAATCTTCC 60 NA Rattus norvegicus 81 Nup107 ENSRNOG00000006541 ENSRNOT00000009203 3 1 1 80 7 60797076 60797094 TTTGGAGGGTGTTACGGAG 59 60795494 60797035 ATAGTCGCAACATCCAAATCTG 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 3 2 2 80 3 51555364 51555384 GTGGCCTATGGATTTCAAACC 60 51545962 51555325 GCTAACCAAAGAAACATCAACG 59 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 1 1 1 60 3 143122554 143122575 CATTGACAATTGTCCATTGCAG 59 143122596 143123367 AATGTAAGTGCAGCGTACC 58 NA DesignNoJunction Rattus norvegicus 81 Tfcp2l1 ENSRNOG00000002414 ENSRNOT00000003280 1 1 1 80 13 34640276 34641643 CCGCATCTTAGACATTGATATTCC 60 34641681 34641700 TCTACAGCATTCAGTTGGGT 59 NA Rattus norvegicus 81 Olr710 ENSRNOG00000059642 ENSRNOT00000081552 3 1 1 60 3 78544950 78544970 CCAATGTACTTCTTCCTTGCT 58 78544910 78544930 AGATGGCAGTGGAATAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 1 1 1 80 3 159795100 159795121 TCAGAACAACAGTAGATGACAC 58 159785388 159795060 AAGACTTCCTTGTAGACCCA 58 NA Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 3 1 1 80 3 159785395 159795066 TTGGCATGGGTCTACAAGG 60 159785333 159785354 TGAAGAACAGGAGACTTAGAGC 60 NA Rattus norvegicus 81 Sctr ENSRNOG00000049766 ENSRNOT00000072088 1 1 1 80 13 36082766 36083941 GAAACAAACCATTATAAGCGCC 59 36083982 36084000 GGCGAAGACAATGTAGTGG 59 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 2 2 2 80 1 37769417 37769436 TGGTTGCTCCATTTCTTCAG 59 37769477 37770331 AGATAAGTATCTCAGGAGCCA 58 NA Rattus norvegicus 81 LOC684270 ENSRNOG00000050348 ENSRNOT00000071971 1 1 1 80 1 72495090 72495109 CCAGCGAATCACTCATTCTG 59 72492000 72495053 GCTCCTTAATGATCTTCTGAATCTC 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 3 1 1 80 13 37404005 37407323 TTCGACAAGGTAGTAGGAGG 58 37407364 37407384 TTCCTGAAAGAGCAAATCCAC 59 NA Rattus norvegicus 81 Stk3 ENSRNOG00000011278 ENSRNOT00000065722 2 1 1 80 7 73748138 73748157 TTGTGAAGAAGTGCTTGGTG 59 73731058 73748098 CATTCTTGATGAAAGGATGCTG 58 NA Rattus norvegicus 81 Casp3 ENSRNOG00000010475 ENSRNOT00000014095 1 1 1 80 16 48848307 48848987 AACTCTTCATCATTCAGGCCT 60 48848247 48848267 CCATATCATCGTCAGTTCCAC 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068,ENSRNOT00000081570 2 3 3 87 14 80985660 80987122 AGGGAAAGTGTCCACAGAG 59 80985591 80985609 CATAGCCGAGTGGTTTCTG 58 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246,ENSRNOT00000009920 2 2 2 80 3 48705847 48706524 AAGTGCAAAGTCCCAATCC 58 48705785 48705805 TCGCTTTCAAAGGACAATCTC 59 NA Rattus norvegicus 81 Neurog2 ENSRNOG00000010972 ENSRNOT00000014570 2 1 1 76 2 231963200 231963218 CACTTTATCACCCGCTAGC 58 231963258 231963276 GTGCATAACGGTGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064,ENSRNOT00000064184 1 2 2 83 1 101170254 101170272 ATACTCACACTCCAAGGGC 59 101170317 101170700 ACGTTAAACCCAGAGATAGCA 59 NA Rattus norvegicus 81 Cckar ENSRNOG00000043124 ENSRNOT00000065366 1 1 1 80 14 59618284 59619239 AATCTGCTAAAGAGAAGAAGCC 59 59619279 59619298 GGGACTTCTGCAAGTAACAG 59 NA Rattus norvegicus 81 Cckar ENSRNOG00000043124 ENSRNOT00000065366 3 1 1 98 14 59616118 59618178 CAGTCCTGGCAAACATTCC 59 59618239 59618258 TCCTTGGTAGAGTTCCAGAG 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687,ENSRNOT00000075057 1 2 2 80 2 31750501 31750521 GTCCTTAGCTCAGTACAATCC 58 31750223 31750460 TTGACAACTTGATCCTGCTG 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 1 1 1 60 2 199529074 199529094 AGCCAACTTCAACTATGACAG 58 199529034 199529053 CACCAATATGTCCATGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim43a ENSRNOG00000010699 ENSRNOT00000044521 1 1 1 80 8 96397460 96397480 GAGCTTATGACAATGTCCCAG 59 96398610 96399304 CACTAACTCACATCTTCTAAACAGG 60 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 3 1 1 62 1 207655049 207655705 GAGATGAGAACGACCCAGG 60 207655730 207655749 ACATCTTCTCACAGTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Gjc1 ENSRNOG00000048838 ENSRNOT00000073372 2 1 1 81 10 90782877 90784292 CTGGTTAACAGGGCAAACC 59 90782814 90782834 CGAATGGTTGTGTATCTCCTC 59 NA InUTR Rattus norvegicus 81 Unc50 ENSRNOG00000018128 ENSRNOT00000024582 3 1 1 81 9 44031335 44031354 ACCTGAATGCTTTCTATCCG 58 44031395 44031491 GTGTCTGTGAGAATAACATGGT 59 NA Rattus norvegicus 81 RGD1305645 ENSRNOG00000023576 ENSRNOT00000036990 1 1 1 81 9 50533248 50541649 TCAGAAACGAGAAGGACCTG 60 50541693 50541711 CAGGCCACCTAGGAATTCC 60 NA Rattus norvegicus 81 RGD1305645 ENSRNOG00000023576 ENSRNOT00000036990 2 1 1 83 9 50533246 50541648 CTTCAGAAACGAGAAGGACCT 60 50541693 50541711 CAGGCCACCTAGGAATTCC 60 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945,ENSRNOT00000056170 3 2 2 80 5 150884187 150884207 AAACATGACTGTCAAGAACCG 59 150884246 150889403 AGAAATACCCGTTCTAATTCGC 59 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 1 2 2 80 1 255063271 255063290 GACCCACAAATCGCTATCTG 59 255063331 255067143 CTTCATGAGACCCTTTACCAC 59 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 2 2 2 80 1 255063272 255063290 ACCCACAAATCGCTATCTG 58 255063332 255067144 TCTTCATGAGACCCTTTACCA 59 NA Rattus norvegicus 81 Polr1b ENSRNOG00000018349 ENSRNOT00000024882 1 1 1 80 3 121640813 121640832 GAACGCTTCAGAGTAAAGCT 58 121640874 121641479 GATGCACTGGTTAAACAGGA 58 NA Rattus norvegicus 81 Cntd1 ENSRNOG00000051150 ENSRNOT00000076865 1 1 1 80 10 89200196 89200214 CAGCAGAATGAGCAAGCAG 60 89200256 89204894 AAAGACAAACTCAACGATCCG 59 NA Rattus norvegicus 81 Tsks ENSRNOG00000020443 ENSRNOT00000049584 1 1 1 80 1 100947075 100948053 CAGTCAATTGAAGGAGAACTG 57 100948095 100948113 TTCTGCTTCAGGACATTGG 58 NA Rattus norvegicus 81 Fdxacb1 ENSRNOG00000010743 ENSRNOT00000065879 3 1 1 80 8 55199249 55199267 CAGAGTCAGACTGGAGGAC 59 55199309 55200021 TCATTGATGGTTCTGTTCAGC 59 NA Rattus norvegicus 81 Doc2g ENSRNOG00000018029 ENSRNOT00000024353 2 1 1 129 1 219251433 219251525 AAGACCCTGAGGCTATGTG 59 219251617 219251636 GACAGATGTCAAAGCTCCTG 59 NA Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 1 1 1 60 10 87655681 87655699 CAACACCCAATAGCCTCCT 59 87655723 87655741 CGCCACTTATGTCATCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 2 1 1 60 10 87656480 87656499 TCCTTTGATGACCTGAATCC 57 87656519 87656540 GTGTATACTCATAGACAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767 2 1 3 90 1 40861620 40899160 GATGAGGATGTTGGACAGC 58 40899213 40899232 TATCTTCAACAGCTGTGGAG 57 NA Rattus norvegicus 81 Tnfrsf11a ENSRNOG00000015615 ENSRNOT00000021129 3 1 1 80 13 25804233 25805124 CGAACCAGGAAAGTACCTG 58 25805168 25805186 AAGTATTCATCTGGGCCAC 57 NA Rattus norvegicus 81 Myo5c ENSRNOG00000008356 ENSRNOT00000011768 2 1 1 80 8 82207323 82207344 AGAACTCTTTATTCGAGAAGCC 58 82207385 82208317 ACTGGTACTCCACCTTGTC 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 3 3 3 61 10 89286249 89286267 ATCAATCTCCTCTGGGTGG 59 89286290 89288267 AGAATCCACTTAAAGACGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Olr886 ENSRNOG00000029097 ENSRNOT00000051699 3 1 1 60 7 5818175 5818195 CAGCACTGATCATCATTCTCC 59 5818135 5818154 GATTCACAGAATTCCAGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra2a ENSRNOG00000047545 ENSRNOT00000071541 2 1 1 60 1 274766907 274766926 AAGTGGTATGTCATCTCGTC 57 274766949 274766967 GGATCATGATGAGGCAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankar ENSRNOG00000003991 ENSRNOT00000005313 3 1 1 80 9 53013949 53013968 GGACATTGATCAAGATGGGA 57 53014008 53022330 GTAATATCAACCAAACCTGCTG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172,ENSRNOT00000065342 1 2 2 80 1 193214427 193218810 CTCTTTCCAGATCAAGTAGCC 58 193218852 193218870 GATGTCTGAACAGCCAGAG 58 NA Rattus norvegicus 81 Mars ENSRNOG00000025459 ENSRNOT00000035486 1 1 1 80 7 70588238 70588504 CCTCATCGCTACAGAATACCT 59 70588178 70588196 GCCATGTCTCCAAACACTC 59 NA Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 1 1 1 80 2 187111144 187113442 AAATCCCGAGGAGTACCAG 59 187111082 187111100 AAGTCCGTGTATCCTGACC 59 NA Rattus norvegicus 81 Hsd17b1 ENSRNOG00000019830 ENSRNOT00000026878 1 1 1 80 10 88987624 88987643 GGTTGCTCTTCTGGAATTGG 59 88987683 88987782 TGTGGCATAAACTTTGAAGCTC 60 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 2 1 1 80 10 56837982 56838289 TCTTCAGAGCAGACTATCCC 58 56837921 56837942 GTGAAGAGGTAGGAGTTATTCG 58 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 3 1 1 80 10 56837978 56838285 CAGAGCAGACTATCCCTAGC 59 56837917 56837935 GGGTGTGAAGAGGTAGGAG 59 NA Rattus norvegicus 81 Mir6330 ENSRNOG00000050956 ENSRNOT00000072980 3 1 1 60 8 113718180 113718203 GGTCATTTCAGTACATGTACACAG 60 113718143 113718162 GTTACACATGTGTTGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 3 2 3 80 2 210723634 210723652 CAACTGCCTGGAATGATGC 60 210723487 210723591 CACAAAGGTGATCTTGTCCC 59 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000045573 2 1 2 83 10 59923382 59923401 TGTTTCTCAGCAACTTGTCC 59 59923447 59934372 CTTGGCTCTGCATGTTCTG 59 NA Rattus norvegicus 81 AABR07070669.1 ENSRNOG00000056409 ENSRNOT00000082411 2 1 1 80 8 79419440 79419460 ACACATCCTCCTTCTCATCTG 59 79420547 79420565 GGCGGATTCCTTTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Arhgap33 ENSRNOG00000024677 ENSRNOT00000034001 3 1 1 80 1 88983916 88983935 GCAAGACACAGTGCTAACAC 60 88982906 88983873 CTCCATAGACCGTAGCAGG 59 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938 3 1 2 113 8 98752148 98756683 ACATACAGGCGAGAAACCT 59 98756759 98756778 ATATAAGGCTTGTCGCTCGT 59 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 1 2 2 82 10 37606667 37606686 GATATTCCTGTTTGGGACCA 57 37606730 37607837 TCTAAGTAGTTTGCAGCCAG 58 NA Rattus norvegicus 81 Has2 ENSRNOG00000004854 ENSRNOT00000006517 3 1 1 168 7 96442344 96453041 CGTGGATTATGTACAGGTGTG 59 96440933 96440952 GTATCTCACACTGCTGAGGA 59 NA Rattus norvegicus 81 AC110474.1 ENSRNOG00000036665 ENSRNOT00000054921 3 1 1 60 10 110438297 110438316 GCACAGGTAAAGATCTGGAG 58 110438339 110438357 GATCAGGCTCAATTGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf7 ENSRNOG00000005872 ENSRNOT00000008022 3 1 1 84 10 37625306 37625325 CAACTTTCTCCACTCTACGA 57 37624229 37625259 TGTGAACTCCTTGCTTCTG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431,ENSRNOT00000050819 2 2 2 80 X 23520027 23522016 GATCACTATTCACAGGAAGTGC 59 23519968 23519989 ACAAAGAAGTGCTTCTTTCTGG 60 NA Rattus norvegicus 81 Inpp4a ENSRNOG00000017660 ENSRNOT00000024330 1 1 1 80 9 43962829 43962850 CTCTCATCAATCAGATGACCCA 60 43962890 43963168 CCAGCAAGTACATTGTTCCC 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073,ENSRNOT00000004699 2 2 2 80 10 96237163 96264772 GCAGAAGTTCGAGAAAGCC 59 96237101 96237120 TTAGATGGCTGCTTCCTGTC 60 NA Rattus norvegicus 81 Hnmt ENSRNOG00000005223 ENSRNOT00000007471 1 1 1 80 3 909653 909671 GCCACCCTGAAATTCTTCC 59 905788 909609 CCAGCCACTAGTTCCTGAC 60 NA Rattus norvegicus 81 LOC100361854 ENSRNOG00000029512 ENSRNOT00000051134 1 1 1 60 X 115495839 115495858 TGCTTCCCAAGCTCTATGTC 60 115495798 115495816 ACCTTGCTATGAATGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236 2 1 2 72 8 117783318 117783336 ATACTGCTGCTCTGACGTG 60 117783371 117789847 AAATCTGGACTCTGGCTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Prr14l ENSRNOG00000048891 ENSRNOT00000072368 1 1 1 80 14 83260153 83260171 ACCATACCACATGTGCCTC 60 83260215 83261519 AAACACAGGCTCTAGCCTC 59 NA Rattus norvegicus 81 Ccr10 ENSRNOG00000020275 ENSRNOT00000027458 2 1 1 139 10 89088243 89088957 CCACAGAACAGGTCTCCTG 60 89088122 89088140 CACCATCAGGGAGACACTG 60 NA Rattus norvegicus 81 Rab21 ENSRNOG00000003923 ENSRNOT00000005258 3 1 1 80 7 58273668 58274617 CTTGCTATATGGGATACAGCC 58 58273608 58273628 AATAGCTCCATTCGAATCTCG 58 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 1 2 2 80 10 90406411 90410230 GACGGCTATAATGATGTTGCT 59 90406351 90406371 CTGACCAAGGAATATCAGCAC 59 NA Rattus norvegicus 81 Tom1l1 ENSRNOG00000002474 ENSRNOT00000003369 3 1 1 80 10 78191031 78191049 ATGAAGACGTGACAGTGGA 59 78187599 78190990 TTCGAGTAAACCTCTCGTATCC 60 NA Rattus norvegicus 81 Noc4l ENSRNOG00000037478 ENSRNOT00000056725 3 1 1 80 12 52076296 52076314 TCATCAACCAGGCACTCTC 59 52076355 52076459 CCTGCTCAAAGATCTCATATGC 59 NA Rattus norvegicus 81 LOC100910577 ENSRNOG00000033583 ENSRNOT00000042498 2 1 1 102 7 9898367 9898897 CATGGAAGGTATTTCAACTGTC 58 9898957 9898978 CACATCTTCTAATTGTTCTGGG 57 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 1 1 3 181 20 4789801 4789946 CTCACCTTGAGATGGGAGG 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 Tnpo1 ENSRNOG00000014999 ENSRNOT00000020543 1 1 1 80 2 29082023 29082042 TGAATTCTGGCTGACTTTGG 59 29081465 29081981 AACACGGGAATCAACTTAGG 58 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 2 1 1 80 3 161469568 161474547 ACAGACGAAAGATTATGCGG 59 161469507 161469526 GTGTTGAGGAAGATCAGGTC 58 NA Rattus norvegicus 81 Fanci ENSRNOG00000016689 ENSRNOT00000050759 1 1 1 80 1 141137161 141137180 TTTCTTCAGACTCTCGTCCC 59 141137217 141141584 CCAACTATGAACACTATTCTTCACC 60 NA Rattus norvegicus 81 Lif ENSRNOG00000007002 ENSRNOT00000009313 1 1 1 82 14 84498194 84498214 TCATGAACCAGATCAAGAGTC 58 84498257 84498848 CCCTTGAGCTGTGTAATAGG 58 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864,ENSRNOT00000050275 1 2 2 80 9 52716792 52717104 CAATTACTGAGCTTCTTCACAC 58 52717143 52717163 GCAGTGAGTTTACAAACAGAG 58 NA Rattus norvegicus 81 Mapk8ip1 ENSRNOG00000058478 ENSRNOT00000079746 3 1 1 80 3 81296548 81296567 CTGTGTCCTTGAAATCAGCG 60 81296313 81296507 CATTTATTTCCCTTGGCCTCC 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000077878 3 2 3 64 7 66717511 66717529 GCCTTGTCACTAGAATGCA 58 66727008 66727027 ATTATTCCCGATTCAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Zhx1 ENSRNOG00000006412 ENSRNOT00000008454 1 1 1 81 7 97937671 97937691 CCAAGTACCTCATTTGAAGGG 59 97923391 97937628 CACAACTCCAATCACCTGC 59 NA InUTR Rattus norvegicus 81 Melk ENSRNOG00000013598 ENSRNOT00000066277 2 1 1 80 5 59812248 59812266 CTCTTGAACCATCCCTGGA 59 59812308 59819270 ATCAAGGTGAGTCAAAGAAGC 59 NA Rattus norvegicus 81 Cmklr1 ENSRNOG00000000704 ENSRNOT00000000893 2 1 1 85 12 48789340 48791123 TCTCCAAAGAGATGGAGTACG 59 48791170 48791188 GTCCACGATGTAGTCCGAG 60 NA InUTR Rattus norvegicus 81 Cmklr1 ENSRNOG00000000704 ENSRNOT00000000893 3 1 1 86 12 48789341 48791124 CTCCAAAGAGATGGAGTACGA 59 48791172 48791190 AAGTCCACGATGTAGTCCG 59 NA InUTR Rattus norvegicus 81 Hgfac ENSRNOG00000009572 ENSRNOT00000013257 2 1 1 80 14 80971498 80971516 GTACCCAGGACCATGTGTC 60 80971295 80971454 CAAAGCACTTCTCTGTGCC 60 NA Rattus norvegicus 81 LOC689959 ENSRNOG00000051792 ENSRNOT00000080736 1 1 1 95 8 55167378 55167398 TCCAGAAGAGAAACAAGACAG 58 55165821 55166410 TTTCATAGTCCTTCGTGCC 58 NA Rattus norvegicus 81 Gabbr2 ENSRNOG00000008431 ENSRNOT00000011573 2 1 1 80 5 62287317 62290147 GAATGAAGATCACAGAGCTGG 59 62287257 62287276 TGTATGTGGTCTTCTCTGGT 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 3 2 2 80 1 6837907 6837925 GTCCTCAACTTCACCACCA 60 6835484 6837865 GCTGAAGAGATCTGGTTTGTG 59 NA Rattus norvegicus 81 Unc45a ENSRNOG00000012357 ENSRNOT00000017407 1 1 1 80 1 142121011 142121029 GGACTGCAGAACTTTGAGG 59 142120043 142120970 CTTCAGGATCTTCTGTCTAAGC 58 NA Rattus norvegicus 81 Lrrc39 ENSRNOG00000015117 ENSRNOT00000020297 3 1 1 80 2 219612520 219612538 ATGGAGAGGAAGAACAGGA 57 219612582 219615812 CTTGGTCTTCTGTTCTCCG 58 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 1 2 2 80 14 86112958 86113222 TCAATAAGGCCAAATACCTCAC 59 86112899 86112917 GCAGTAGGATCTCGTCCAG 59 NA Rattus norvegicus 81 Wscd2 ENSRNOG00000053045 ENSRNOT00000080783 3 1 1 84 12 48817693 48828541 GAAAGGCAAAGAATGGCCC 60 48817627 48817645 CTTGCCAAACTTGAGCCAG 60 NA Rattus norvegicus 81 LOC684376 ENSRNOG00000047871 ENSRNOT00000070789 3 1 1 60 1 168082389 168082407 TTTGTGGCTATCCGAGACC 60 168082347 168082368 TTCCAATAACACCATGAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sytl3 ENSRNOG00000018321 ENSRNOT00000024967 3 1 1 80 1 47272172 47272193 CCTTAGAGATCTGCATCAAGAC 59 47272233 47277538 TCTTGACATACGGATTGCAC 58 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000092165 2 1 2 170 9 8399672 8400358 ACAGTTCCTACCGCATCAG 60 8400492 8400510 AGATGTTCATTCCGGCCTC 60 NA InUTR Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 2 2 2 80 8 56592803 56592822 AAACTGACCAAAGAGCAGTG 59 56592861 56593507 CATTGAATCTTCCCTTAGCATCC 60 NA Rattus norvegicus 81 LOC100359574 ENSRNOG00000025154 ENSRNOT00000030108 1 1 1 60 1 281864214 281864232 CATCGCCTGTTCTGTAACC 59 281864255 281864274 AATGGATTGGATCTGCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 2 2 2 81 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422287 126422308 GAGCTCTACTTCTTTACACTGC 59 NA Rattus norvegicus 81 Cdc14a ENSRNOG00000014515 ENSRNOT00000064735 3 1 1 80 2 219323201 219323881 GCAAACATAAGAAGCTTCTCC 58 219323141 219323160 CTCAGTTTCTTCTGTCCCAG 58 NA Rattus norvegicus 81 Hspa1b ENSRNOG00000050647 ENSRNOT00000081924 1 1 1 60 20 4878096 4878114 CAAGGCCAACAAGATCACC 59 4878054 4878072 CTCGATCTCCTCCTTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr89 ENSRNOG00000050189 ENSRNOT00000072397 1 1 1 60 1 168411840 168411858 CATTGCCATCTGTGATCCT 58 168411881 168411900 CCGACCTAGAATTGAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr88 ENSRNOG00000060826 ENSRNOT00000079028 1 1 1 60 1 168404255 168404276 TTTATCCTCATATCGTATGCCC 58 168404296 168404315 CCTCCTTCTGTTGAAGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r46 ENSRNOG00000032817 ENSRNOT00000048152 2 1 1 60 1 67065488 67065507 CTACAGTAATCGAGTGTCCC 57 67065447 67065466 GAAACAACTCAAGAGGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Notch4 ENSRNOG00000000442 ENSRNOT00000000513 3 1 1 81 20 4343065 4343467 GATGAGCCAAGGTGTAGAG 57 4343512 4343530 GCGACAGAAATAGGAGGAG 57 NA Rattus norvegicus 81 Klhl25 ENSRNOG00000010959 ENSRNOT00000014553 2 1 1 72 1 137341213 137358983 CGGTGGATACACAATGTCAG 59 137341160 137341178 GATGTTCATGGAGCCTGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 2 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Mybphl ENSRNOG00000037082 ENSRNOT00000027099 2 1 1 80 2 211168220 211168238 CAGGATGCTACCAACTCTG 58 211168282 211168488 CTGGCTTCTCAATCACCAG 58 NA Rattus norvegicus 81 Agpat1 ENSRNOG00000000437 ENSRNOT00000088079 1 1 1 82 20 4375367 4375385 GGTTGGATCCTCTTCCTGG 60 4375429 4375650 CGCAAGATCTTCATGTTCTCG 60 NA Rattus norvegicus 81 Inafm1 ENSRNOG00000049661 ENSRNOT00000071098 1 1 1 237 1 78212247 78212265 GTCTGATAGGGCGTGACTC 60 78212028 78212046 TATACCGCAAGCAACACAG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997,ENSRNOT00000072577 2 2 2 80 2 34559328 34559347 TGTGACCCTGACAGTAAACC 60 34559388 34568093 GTCACCAATGAACCATTCAGG 60 NA Rattus norvegicus 81 Tti2 ENSRNOG00000023494 ENSRNOT00000032467 2 1 1 80 16 64741078 64741169 GCCTTTGTGAAGAAGTTGGG 60 64741017 64741035 AACCTCCAGGTAACCAAGG 59 NA Rattus norvegicus 81 Gpsm3 ENSRNOG00000000441 ENSRNOT00000000510 3 1 1 96 20 4356284 4356532 ATACTCAGTCACCAGTGCC 59 4356592 4356610 GAACTCTGAGCAGCAACTC 59 NA Rattus norvegicus 81 Prrt1 ENSRNOG00000000433 ENSRNOT00000091188 3 1 1 104 20 4395020 4395038 ATCATCGCCATCTTCAAGG 58 4395246 4395265 GATGAAGGAGAAATTCCGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102550797 ENSRNOG00000047861 ENSRNOT00000075593 2 1 1 80 8 40879643 40880377 CAGCAACATCTGGTCTCAG 58 40879581 40879600 CAACCTATTCTTCAGGAGGC 58 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 2 2 2 80 2 225608211 225608229 AAACCGCTCTTATCACCAG 58 225608270 225608799 ACGGATATCTTCCTTTGAAGAG 58 NA Rattus norvegicus 81 Rpp25 ENSRNOG00000018812 ENSRNOT00000025410 1 1 1 62 8 62284044 62284062 AATCTGCAGCTGGAGAAGG 60 62284088 62284106 CCTCATTCTCAGCCTCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a54 ENSRNOG00000027522 ENSRNOT00000038315 1 1 1 80 2 211884508 211884529 GAAGTACCTTCAAGACCATGAG 59 211884570 211900962 GCATCTATTACGCCATCGG 59 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 2 2 2 80 2 227188351 227190468 TTGCACCAGGATATTCTGGA 59 227188290 227188311 ACTGGTAGTACTTAGGAACAGC 59 NA Rattus norvegicus 81 Bend3 ENSRNOG00000046505 ENSRNOT00000071494 2 1 1 132 20 48249913 48249931 CTCCACAATTCCAGCAAGC 60 48265298 48265316 AGGGTGAACTGTTCTCACG 60 NA DesignNoJunction Rattus norvegicus 81 Tnks ENSRNOG00000011625 ENSRNOT00000015813 1 1 1 80 16 61038889 61040249 TGGAAACTGTGAAGCAACTG 59 61040291 61040310 AGTGTAAGGGAGTGGAATGG 59 NA Rattus norvegicus 81 RGD1564138 ENSRNOG00000037172 ENSRNOT00000050117 2 1 1 60 8 119214843 119214864 CAAACTTGGGAAGAAGATTCGA 59 119214883 119214903 CTTTGGTTGGCAGAATCTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek5 ENSRNOG00000048769 ENSRNOT00000058091 3 1 1 80 16 74828431 74828449 AAAGCCATCGAGAGGAGAC 59 74828492 74829547 GCTGCTTCCAATATTCCTGG 59 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000043480 ENSRNOT00000067683 3 1 1 60 8 115512186 115512207 CCAGTTCATCTTAAATCGACTG 57 115512228 115512246 TCAGTCTGAGAAGACAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 1 1 1 60 20 42842955 42842973 CCTGGGTCCTAAGTCTGTG 59 42842996 42843015 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lman1l ENSRNOG00000019355 ENSRNOT00000026192 1 1 1 80 8 62388701 62389400 CAAGAGATGAGGGAAGCAG 58 62388639 62388658 AAAGTGATGTTTAGTGCCCA 58 NA Rattus norvegicus 81 Rcc2 ENSRNOG00000006327 ENSRNOT00000008940 3 1 1 82 5 159225490 159225875 GCGTTAACAGATACTGGCTC 59 159225920 159225938 ACAGCATCTGTCTGGTTCC 60 NA Rattus norvegicus 81 Cyp1a2 ENSRNOG00000016173 ENSRNOT00000021653 2 1 1 80 8 62455694 62455712 TACAAAGACAACGGTGGTC 58 62454690 62455650 TGTTTCAAATCCAGCTCCA 57 NA Rattus norvegicus 81 Pard6b ENSRNOG00000010883 ENSRNOT00000014568 2 1 1 84 3 164828334 164828354 ATGATGACAACTACCACAAGG 58 164828400 164840642 CTGTAGTCGGCTTCTTCCT 59 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 2 3 3 84 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155170 155188 CAAAGACAGCCAAAGGTCC 59 NA Rattus norvegicus 81 Tpte2 ENSRNOG00000024837 ENSRNOT00000034670 2 1 1 80 16 74591166 74593229 TAAACGCAAAGGCAAGTCTG 60 74591105 74591128 TCTCTACTCCTTGAAACTTAGAGC 60 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000084375,ENSRNOT00000087712,ENSRNOT00000087134 2 4 4 80 3 56871804 56872984 TGCTCAAGATCTGCTTCCA 59 56873026 56873046 TTGAGGAGTATGTCAACCACC 60 NA Rattus norvegicus 81 Olr1673 ENSRNOG00000047925 ENSRNOT00000051646 3 1 1 60 20 421606 421628 AGTAGTAACTCCTACACTGAACC 59 421568 421588 TCCCTTTACATCCTTGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 2 2 2 80 5 105427808 105427827 TCCACAACAGTCTCATGAGG 60 105402760 105427767 ATGATCCAAGTTCTTCAGCGA 60 NA Rattus norvegicus 81 Eif4ebp1 ENSRNOG00000012582 ENSRNOT00000016885 3 1 1 164 16 68956855 68956873 TGATGGAGTGTCGGAACTC 59 68955317 68956727 ACTGTGACTCTTCACCACC 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 2 2 2 80 5 156094783 156097868 ACATCGATGTGATCATGGG 57 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Focad ENSRNOG00000024402 ENSRNOT00000058387 2 1 1 80 5 106521844 106521865 AGATGGAGGACAGAATCTTCAG 59 106521905 106553509 AGATGTGGTACCTGAGAGGA 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 2 1 2 96 3 156775223 156775241 AGAACAGTGAAGCATGGGA 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Rapgef4 ENSRNOG00000001516 ENSRNOT00000010630 3 1 1 80 3 58689760 58692947 AAAGGAATCACACTGTTTCGAC 60 58692985 58693006 CACTTTAACATCCAAAGACCCA 59 NA Rattus norvegicus 81 Tm2d1 ENSRNOG00000007527 ENSRNOT00000009897 1 1 1 80 5 116999733 117008366 TATTTCAATGCAGATCGTCGG 59 116999673 116999691 CTGAGTCTCGTGAGTCTGG 59 NA Rattus norvegicus 81 Ddhd2 ENSRNOG00000015501 ENSRNOT00000020832 1 1 1 80 16 71109284 71109302 ACAGGAGAAGCCCATTGAG 59 71109342 71118462 GTATCTTCAGATTCCCAGTAGCA 60 NA Rattus norvegicus 81 AABR07026233.1 ENSRNOG00000038490 ENSRNOT00000058668 2 1 1 89 16 68672122 68673432 ACGATACAATCTCCACAGGA 58 68672052 68672070 GTGTTCAGAGGAGATGTGC 58 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 2 4 4 113 5 160355994 160358472 ATCGAGGATATTCAGCGGG 59 160358549 160358567 TAAGCAGGAGATGAAGCGA 59 NA Rattus norvegicus 81 Osbpl2 ENSRNOG00000057756 ENSRNOT00000087356 1 1 1 80 3 175513432 175516094 ATTCAGAAGCACAGGACAG 58 175516136 175516156 GCATTTCTTCAGGATACTCCA 58 NA Rattus norvegicus 81 Osbpl2 ENSRNOG00000057756 ENSRNOT00000087356 3 1 1 80 3 175527155 175527175 TGTGTACACAATGTCATCCTG 58 175527214 175527893 ATCTCCAGTTCTGTGATTTAGG 58 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516,ENSRNOT00000012739 1 2 2 80 3 153592295 153592313 CTGCTGGACTTTCTCAAGG 58 153592357 153592902 TGAAGCAATCTGAGCAGAC 58 NA Rattus norvegicus 81 Smim19 ENSRNOG00000024930 ENSRNOT00000036506 3 1 1 87 16 74413067 74413085 AGATGCTGTCAGAACCCAG 59 74413134 74420166 TACTTTCTTGAAACGGGATGC 59 NA Rattus norvegicus 81 Pdha1l1 ENSRNOG00000014745 ENSRNOT00000019797 3 1 1 89 16 88347280 88347298 CATGAGGAAGATGCTTGCC 59 88347125 88347144 AAATTACGGGAAGCTACCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ctsz ENSRNOG00000050697 ENSRNOT00000072069 3 1 1 80 3 172528787 172532545 CCAAGGACCAAGAATGTGAC 59 172528726 172528747 TATAATTCTGGATGGTGTGGCA 60 NA Rattus norvegicus 81 Tm2d2 ENSRNOG00000016559 ENSRNOT00000022425 1 1 1 80 16 71809180 71809609 TTTGCTCTTACCTACCCGAC 60 71809119 71809137 GTTCCTGGTATGCAGTTGC 59 NA Rattus norvegicus 81 Tm2d2 ENSRNOG00000016559 ENSRNOT00000022425 2 1 1 80 16 71809177 71809605 CTCTTACCTACCCGACGAG 59 71809115 71809133 CCAAGTTCCTGGTATGCAG 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 1 2 2 80 3 173896377 173896398 TCAACTTCAGGATCAGAATCAG 58 173894896 173896336 AGTCTCCTCCTTTGTTGGT 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 3 2 2 80 3 173920303 173920324 AACTTACAAACCCTCTAGAACC 58 173919020 173920265 TAGGTGTAGTGATCTCATCCTG 59 NA Rattus norvegicus 81 Ido2 ENSRNOG00000025365 ENSRNOT00000032116 3 1 1 81 16 72276274 72282101 AAATGCACGATTATGTAGACCC 59 72287462 72287480 ATGACTGGGTTGTCCTTCC 59 NA Rattus norvegicus 81 Proz ENSRNOG00000019700 ENSRNOT00000026666 2 1 1 80 16 81791372 81791390 TGACTTCCCAGCACATCAG 60 81788711 81791328 TTAATCTGACCTGCCACGG 60 NA Rattus norvegicus 81 Ikbkb ENSRNOG00000019073 ENSRNOT00000025851 1 1 1 80 16 74222759 74222874 GAAGCCAAGAGACCAAAGG 59 74222918 74222936 TTCTCGAAGCTCTGGATGG 59 NA Rattus norvegicus 81 Atp5hl1 ENSRNOG00000038744 ENSRNOT00000059185 2 1 1 60 16 51816662 51816682 AGTATGTCTGAGAAACCACCA 59 51816704 51816722 CCTTGCCTACATTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290876 ENSRNOG00000026740 ENSRNOT00000057803 2 1 1 86 16 81311696 81313708 CAAGGAGCTAGACTCCGAG 59 81310188 81310206 TTGTCATCCTCTAGGCTCG 59 NA Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 1 1 1 60 16 70069082 70069101 AAGTAAACCACAGATTGCGG 59 70069123 70069142 CAGCATCTTCCTCACATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 2 1 1 60 16 70070155 70070173 GCTTTGGTGTGAAGAACCT 58 70070197 70070215 GAAAGAACGATGGCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il1rn ENSRNOG00000005871 ENSRNOT00000007949 2 1 1 80 3 1463320 1464865 CAAGCCTTCAGAATCTGGG 58 1464909 1464927 TCCTTGTAAGTACCCAGCA 58 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677,ENSRNOT00000063906 2 2 2 80 3 159321932 159321950 GACCAATAGCACAGTCAGG 58 159321994 159322308 TTTATCCGGAACCTCATGC 58 NA Rattus norvegicus 81 Il36b ENSRNOG00000043323 ENSRNOT00000067207 3 1 1 80 3 1367408 1367427 GGGAATCAAAGGCAGAAGTC 59 1366497 1367368 ATGTCTACATCCTTAAGCTGCA 60 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 2 1 1 80 3 160608168 160608186 TCCCTCTACTCACAGTGAC 58 160607964 160608126 GTTTGGATAAAGCCTTCTTCC 57 NA Rattus norvegicus 81 Jund ENSRNOG00000019568 ENSRNOT00000026470 2 1 1 62 16 20486271 20486289 AAGGCTGATCATCCAGTCC 59 20486227 20486245 TAGAGGAACTGCGTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Marco ENSRNOG00000049303 ENSRNOT00000075773 1 1 1 80 16 85118085 85118522 AACCTGGGATGAAAGGGTC 59 85117350 85117369 GGACAACCAGGTTGAAATCG 60 NA Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 1 1 1 60 16 58791175 58791193 ACATAGCATGTCACCACAG 58 58791214 58791235 TCATCTTTCTCCATCCTTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 3 1 1 60 16 58791623 58791643 AGGTGAAGAAAGGAAAGATGG 58 58791663 58791683 TGTACTCTTACAATGCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 1 2 2 80 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000080324 2 1 2 84 2 196494814 196496307 ATAACTGGAAAGGAGCTGGG 60 196496354 196496372 CACTCTGAGGATCCCTTCC 59 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000087430 1 1 2 81 15 33757544 33757562 GCTAAGCTCCTGGTCTACC 59 33757607 33758567 CTGAGGATCCGGAACTGTC 60 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000076134 3 1 2 106 3 37946948 37946966 TTCTAGGGTGAAGACCGAG 58 37939185 37946878 AACTTTGTGCTCAGACGAG 58 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 3 2 3 81 2 219087869 219090080 ACATCTACTCATTCCCTAAGGA 58 219087809 219087827 AAACACTTGACCATGACCG 58 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204 3 1 2 80 15 40528148 40528169 TGCGGAAATAGCTTTAAGAACC 59 40526760 40528108 ACTCTGAAGTAGTCAGCAGG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 115 2 216496990 216498237 TCCCAAAGTTTGCATCCTG 58 216496893 216496911 TTGTTTAATGCTGCAGGCA 59 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056161 2 1 2 80 8 118148726 118148746 GCTACAGCCATATTCAATCCA 58 118148786 118153784 TCTGAATCTGAACATTGCCAC 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 1 2 2 80 2 57237363 57239212 CACTAGGAAATCCAAATACCACTG 60 57239251 57239269 GCTGGGTGTTTCCATTCTC 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 2 2 2 80 X 31167574 31167595 GAGTAAGAATGAGATCCAGGAG 58 31167632 31171999 CTATACTTGAAAGGATCTGTCCC 58 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395 2 1 2 80 X 31179224 31179242 GTCTGATGCTGAAGGACAG 58 31179282 31180274 CTAGTAAGCGATTGAGTTGTAGG 59 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000085690 2 1 2 80 2 188330319 188339651 CCATTCATGTTGATGTCTACGT 59 188339687 188339710 CATCTGGCTTCTTACAATTACAGG 60 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 2 2 2 80 2 123814236 123820246 GGGAAGATCACTGAAAGTTCTC 59 123820287 123820305 TCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 3 2 2 80 2 123814237 123820247 GGAAGATCACTGAAAGTTCTCC 59 123820287 123820306 ATCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195 1 1 2 80 5 136075078 136075096 CTCATAGCCATGCTCATCC 58 136074943 136075035 CTGGAGAATCGAAGAGTCAC 58 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 2 2 2 80 8 132668422 132669451 CATTTCAGGTCTGGTGTGC 59 132668360 132668380 ATGTCAAACCAGTAGTTCCCA 59 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 2 2 2 80 8 132716701 132717712 CATTTCAGGTCTGGTGTGC 59 132716639 132716659 ATGTCAAACCAGTAGTTCCCA 59 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 1 1 1 60 2 193429285 193429304 TGGAATATGAGTTTGCCGAC 58 193430061 193430079 ACTTCATCCACAGTTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775 3 1 6 108 1 76475251 76475270 ATCATGGTTTGAGCACATCC 59 76260552 76475186 CTTCTTTATGGATCCCATTGTATCC 60 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 3 2 2 60 1 222243175 222243194 CATCTACAATGACACTCGGG 58 222243055 222243073 GTGCTTCTGCTGAATCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000022980 1 1 3 80 17 10617660 10618272 CAGTATGAATCGTTAACGCTG 58 10617600 10617618 CTCCATGACATAGGTGAGC 57 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 2 1 2 92 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212086 263212105 TACTTGACCTGTTGAGCCAG 60 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000061814 2 1 3 87 13 25994601 25994619 CAGGCCTTCCTTCAGAGTC 60 25994668 25998652 TGTGCTGTAACACATTGAAGC 60 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000008936 3 1 2 96 4 17439854 17593896 GTCTCATAAAGAACTCTTGGAACTG 60 17439782 17439801 TTGATACTCATCCAGCAGCA 59 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 2 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316594 22316613 TCGATCTTCAAACTGTGCCT 60 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 1 2 2 80 1 137955846 137966300 GGGAAAGAAGATGATGACTTGG 59 137966339 137966359 AAGTTCCTCCTCAGGTAAGTC 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271 1 1 2 80 15 45859856 45862370 GCATCCAGATTTAAGAAGCGA 59 45859796 45859814 GATCTGATTGGCTCTCCGA 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 2 1 1 60 1 99864155 99864174 TCATCTTCAGTTTCCTCAGC 58 99864679 99864700 CTTCAGTCTGAGGAGAATTAGC 58 NA DesignNoJunction Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000084777 1 1 3 80 4 7208289 7208308 GTTCCATTTCCAGCACTGAC 60 7205435 7208246 AGGACTCCTCTGTCTCAGG 60 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 1 2 3 80 5 25580002 25583507 CCCAGACGAATTGGAATCC 58 25579940 25579958 AAACAGTTGAGTTGGTGCT 58 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000088536 2 1 2 106 1 189911473 189911617 GAGAGTCTACTGGTTGCGT 59 189910452 189911403 CACAAATGAGAGTGCCTGG 59 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085 3 1 2 81 17 18037403 18038285 GTGTTTAAGAGTTCTTCCGGG 59 18041211 18041229 CAAACTTGCCGATGTTTGC 59 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 84 20 9791406 9817307 GGAAGAAAGGATACAAGACCCT 60 9817352 9817370 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 1 2 2 80 10 37290994 37291014 CAAGAATGGGAGAAAGGTGTG 59 37286560 37290952 TAGTGGTGGGAGGATCCTC 60 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 3 1 2 85 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715989 38716010 AGTTTAGCTCTCATAGCAGAGG 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 3 3 3 80 X 37983848 38069152 AGAACCAATAAACGAGGAGAG 58 37983788 37983807 AAGCTCATCGTCATTCTGAG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000084756 2 1 10 81 2 231243010 231255697 TACAACAGCAACACTATCCC 58 231242948 231242966 CTGAAGCCAAGGTGATCTG 58 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 1 1 2 99 1 69739357 69739999 CTCGGACTTGTACCTTCCG 60 69738151 69739294 TCCAACAACCTGGAGTCAG 59 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 2 1 2 100 1 69739358 69740000 TCTCGGACTTGTACCTTCC 58 69738151 69739294 TCCAACAACCTGGAGTCAG 59 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 2 1 1 60 5 140023850 140023868 TGCCTTATGGAAACGAAGC 59 140020247 140020267 GAGTGTGATCACAAACACCAC 60 NA DesignNoJunction Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 2 2 2 80 17 16257052 16257461 TTGGAAGCATTCAAAGGTTCTC 60 16257499 16257520 ACCATTGAGAATCTTAGCTCCT 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 2 2 2 80 1 143374931 143378414 GGTAACTGAATCTGTTGTAGGC 59 143374872 143374891 ACGTAGATCGTGTAGCTGTG 60 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 1 2 2 80 11 60074814 60084682 TCTATGGGAAGGGAAGGAC 58 60084725 60084744 CCATCATCCTTGGTAACTGC 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 2 3 3 80 4 157246377 157246686 AACATTCTTCCCTTTGACCAC 59 157246317 157246337 GGCATTGATGTAATCAGACCC 59 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000030161 2 1 2 84 12 19515801 19519214 CATGGAAGAGGTGTTCTGC 59 19519261 19519280 ATCTTCAGAGACAGGATGGG 59 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 2 2 2 80 1 257427275 257427296 TTGAGTACAATGAAGAAGTCCC 58 257427336 257428347 CCATGTCATAGACCTTTCCC 58 NA Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 1 2 2 80 2 123271338 123271356 GCTGGTGTGAAAGTAGCAG 59 123271397 123272311 TCCACCTTCTTTCCTAACTCTC 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000041253 2 1 4 83 10 39323284 39323302 AGCTGGAACTGGAGAACTG 59 39306472 39323239 ATTTCTGTTCCTCTGTCACGA 60 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000090849 2 1 3 93 7 18577206 18577227 ACCTCAGTATGTAGCTCAAGTG 60 18564675 18577152 CTGGGTCCTTTAGCCACTC 60 NA InUTR Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 2 2 2 80 18 37007715 37007735 ATGACCAGAGACTATCTGACC 59 36988932 37007675 GTCATGAACCTGGTATGTCTC 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000027091 3 1 2 129 1 220244928 220244946 TTGTCCGTTCCATCATTGG 58 220246135 220246154 CAAATCCGCCTCTTCTGAG 58 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000079864 1 1 2 80 6 1657446 1674822 CAGGAGAAGCACATCATGC 59 1674866 1674884 CGTCCTACTGAGGAAGGTG 59 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 3 1 1 61 15 4130897 4130915 AAAGGCTACCACAACTCCA 59 4131051 4131072 CTTCCTTCTTGGCATTCTTACC 59 NA DesignNoJunction Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022543 2 1 2 81 4 71664396 71664415 TTGACAATGCTAACTGTCCA 58 71664459 71664561 GATCCAATAGCACCTCCAC 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344 1 1 2 156 17 15358007 15358025 TTAACAGGAACTGTGGGCA 59 15357283 15357891 TAGAGACATCTTGTGTCTGAGTC 60 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470 1 1 4 98 6 8219160 8219179 TGAAGGGATTACTTGTCCCA 58 8219239 8249807 GTAACGAATCTGCATGACCT 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 2 2 2 82 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281197 140281216 AAGGTCATGACCAGTTCCTG 60 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 3 1 1 122 18 32595181 32595199 GATGCTTGTGACTCTGCAG 59 32605436 32605454 TGAGCTGGGATTCAAAGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 2 2 2 80 9 9990785 9991738 AAATCCTACACAGCATGGAC 58 9991781 9991799 GAGAGTGCAGCAGAAAGTG 59 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 3 2 2 80 9 9991830 9994016 GGAAGCATTCAACAGTCCT 58 9994059 9994078 TGCCTGTAAGTTTCTCTTGC 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800 3 1 2 88 4 7358505 7373819 TTCTACCGGAAAGATGGGAG 59 7373868 7373888 AGGATAAACATGATGACAGCC 58 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000012634 2 1 2 82 14 85343701 85343719 CTATACCCAGGCTCAGAGC 59 85339630 85343655 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 2 2 2 80 13 89392368 89395472 TAAGCATAGGAGATCCGACG 59 89395514 89395533 ACAAGAGTCCTATCAGCAGG 59 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000090042 3 1 2 92 1 177651601 177651621 AAGACAAGGACTAGGAAGCAG 60 177654066 177654174 ACTAGACACCTTAATGGCGG 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000087678,ENSRNOT00000012948 2 2 3 84 15 45524574 45535931 CAAGGTTCTGGATGTGTCC 58 45524508 45524529 GTCATAGCCAGACATCTTACAG 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000082719 3 1 4 89 17 43524239 43532904 CCATGTCAGGAAGTATTGGT 57 43524169 43524187 GGCTACTTATCCATGGGTG 57 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000083666 3 1 2 82 8 64494729 64494747 GTGTTTGCGTCTTTCATCC 58 64494793 64495804 GCTAGGAAGACCTTCTCCT 58 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161 1 1 2 170 8 96026391 96026412 TCACTCATAACCCTTCTCAGAG 59 96023448 96023474 ACTTATACTTTCAAAGGGTGCC 59 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 3 2 2 183 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550621 98550639 ATGCATTGGATGTAGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492 1 1 2 101 5 115343833 115343851 GATTTGGGTTACCGAGGTG 58 115328045 115334701 TTTATTCTTTCCTGCTGGCA 58 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 3 6 6 84 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282683839 GAGGAAGCATCATTTGTGCT 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497 1 2 4 80 10 82050736 82050759 TTTGAAGACTGCACTCTGAC 58 82047947 82047966 TACTCCTTTGTCCAAGACCA 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 3 1 2 70 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53234620 53234638 CTTCTCTGAAAGCCAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956 1 1 2 80 7 145088598 145088733 AAGACTATGCTGACTCGAGC 60 145088775 145088794 CTTTGATGTGTCTTCGGACC 59 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473 1 1 2 80 1 87975949 87976006 CCATAACAACGCTAATCTCCA 58 87975889 87975907 AGACTAAGGCTGGACAAGG 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 3 1 2 81 12 9990082 9990103 ATGGAACTTAACCAGTGATGTG 59 9988451 9990041 CAGCTTAATGTCCGAGTAGC 59 NA Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 1 2 2 80 2 52310622 52313173 TATCTACCAACAGGCCACG 59 52313217 52313235 GTCAGATGATGGGACAGGT 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000051910 3 1 2 126 2 61409224 61413943 GAGAAGCCGTTGAATCCCT 60 61409116 61409135 TGACTTTAATCGGCTTGCTG 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000087121 3 1 3 136 10 56716967 56716985 TTAACTGGGTGGAGTTTGG 57 56717084 56717180 GAAGAATTACTGCTCCTCCC 58 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 3 3 3 86 17 23175159 23177431 TGGAGCATCATCAGCTGAG 60 23177478 23177499 AGGGTTTCCATTTGGAAATGTC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 1 2 5 85 16 19728867 19728886 TGAGGAGCTGGATGTTAACG 60 19729169 19730709 GGTTATGCAAATCGCTCCG 60 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676 2 1 2 117 9 66518749 66518767 GTAGAAGAGGAGCCGACTG 59 66518847 66519559 TCTCTGGACTAGGAACTGCT 60 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000088559 2 1 3 86 2 157873801 157873820 GGAAGTTCATCAAGAGGTGG 58 157869908 157873752 GGTCGTCCTTAGATTTCCC 57 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000085681 3 1 2 80 10 81824280 81824298 GGAGAGGATCTTCCACTGG 59 81824339 81827376 TAAAGTTCTGGATTTCTGCCAC 59 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 3 2 3 80 20 2089438 2092245 TGTATCAACTGCAAGTTTCAGG 59 2092286 2092304 AAGAGGAGGAAAGGACTGC 59 NA Rattus norvegicus 81 Tpk1 ENSRNOG00000029922 ENSRNOT00000048203 1 1 1 80 4 72958491 73004348 TACTACACCAAGAAGGGCTG 59 72958430 72958449 GAGCACTTGAAGACACTTGG 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000073209 2 1 2 80 10 59682174 59682192 CCTTATGAAGTGGAGCGGA 59 59682236 59683682 TCATCCTCACAAAGCTCCT 58 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000059510 3 1 2 80 17 43329422 43329440 GTCTCCTTGGACAAAGAGC 58 43329484 43338398 TCTCCTTGAGACTTCCTGG 58 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 3 2 2 124 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571935 21571954 TAAGTCCAAGTTTGGCAACC 59 NA Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 2 2 2 80 2 196299005 196299194 AGTAGATAACCAGCGCCAG 59 196299237 196299256 ACAATAGACGGACACTGCTC 60 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249 1 1 2 80 4 114922707 114922726 GAAAGTGGAAGAGAAGGCTG 59 114922767 114924170 GAAGGGAAATCTTGTTCTGGG 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000064284 1 1 2 80 10 103679339 103679358 GTGTGGAATTACAAAGGCTG 57 103673813 103679297 CCACTGTCATACCTCTTACC 57 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000017914 1 1 2 80 1 218435363 218435381 TACTTCCGGAACCTTCCAG 59 218434538 218435319 AGGGATCATCACATCAGGG 59 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000017914 2 1 2 80 1 218435364 218435382 CTACTTCCGGAACCTTCCA 59 218434539 218435320 GGGATCATCACATCAGGGT 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 3 2 2 80 18 51574550 51574571 ACATATTCGTTTCCTTGCTGTC 59 51574609 51574718 CACTTGTGTTCTCTAAGTGTCC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000086007 3 1 4 80 20 2059776 2078315 CACTGAGATGGAAACCAGC 59 2078359 2078377 CTCCAATGGTGACAAACCC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000089763 1 1 2 80 8 48721811 48722116 TTACAGAGCACGAGATCTGG 59 48722159 48722177 CTCCAAACAAGGCAATGGG 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 1 1 2 81 15 41104124 41104146 AAACCTAGTAGGCTATCTACCT 57 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076554 1 1 2 117 3 57389794 57389812 AGTACTGGGAGTTGCAGTG 59 57363923 57376269 GTTTCTTCTCTGGTGTCTCTG 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 2 2 2 80 1 219155225 219155245 AATTGAGTTCATCAACCGGAG 59 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352 1 1 2 120 X 37336863 37337311 AACGGTATCGTTGGACCTG 60 37337393 37338284 ATATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352 2 1 2 121 X 37336863 37337311 AACGGTATCGTTGGACCTG 60 37337393 37338285 AATATCTGACCCTGGTTAGCAG 60 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 1 2 3 109 3 72433271 72433289 GTGTCGGATTATGTGACCC 58 72432625 72432842 TTCTCTTCATTCTCTGGACAG 57 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000081677 1 1 2 80 9 55389607 55390717 CATCTTGCAGATGTGATGC 57 55389545 55389563 GACCAGGAACAACGTAGAG 58 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 2 2 2 80 16 19512855 19512874 GTGATGATGCCCTTAAAGCC 59 19512916 19515086 CATGTTCATCCTTGCTCAGC 60 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 3 2 4 80 1 82338649 82338670 TATCAGTGTGAGATCTCCAACC 59 82332690 82338611 TTGTGTTGGATCAGGTATTACG 59 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000064715 1 1 2 83 2 188523980 188526426 CACCTTCGTAAAGAGATCCA 57 188523916 188523934 CATAGCCTCTGCATACCAC 58 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683 3 1 2 81 2 188523981 188524123 GAAACTACTCCCTATGCTAATCC 58 188523922 188523940 CTCTGCATACCACTTTCGG 58 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 2 3 3 88 17 47320790 47320836 AGAAGAACCTGACCCTTTGG 60 47320883 47321919 CCATATACTCTTGCAAACTGTCC 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 3 3 4 81 3 8467360 8474433 CACTGCAAAGAGGATTCCG 59 8474478 8474496 CTTTCTCTGAGTCGGCCTC 60 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 3 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696270 26696289 TCTTTGTCTCTGCTGTCCTG 60 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 3 2 2 83 2 144551512 144553591 CCACATGAAGGATGTCGTG 59 144553638 144553656 AGGTCAGTGTTGAGGTTGG 60 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000088306 3 1 2 80 12 52068726 52068923 ATCCAGCTCCTTATCAGCA 58 52068664 52068684 AGCATCATAGTTGATCACCAG 58 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580 2 1 2 80 1 219407197 219407305 CGAGTCTGCAATCAGAAGAG 59 219407136 219407157 TGTCATCTGGACTATCTACTGG 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 3 2 2 81 20 13761044 13761356 ATTTACTCAAAGGGCAGCA 57 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355 1 1 4 87 3 63139903 63207749 CAAACAAGAACAAAGGACCGA 59 63139836 63139856 GGATAGGCATGCACAATAGTG 59 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000083851 2 1 2 83 20 12075251 12075269 ACCTGTACATCAGCACCTC 59 12075316 12076502 GTCTATCAGCCGGTTCCTC 60 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 3 2 2 80 9 64520278 64520298 TAGAGATTGCACAAGATGGAG 58 64513776 64520236 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658 3 1 2 90 9 64572909 64572928 GAGGATGTTGTCAATTGCCC 60 64571019 64572856 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262 1 1 2 94 10 63326545 63332247 GCAGGAACAAGTTTGTGCT 59 63332305 63332323 TCCAGTGGTCTTATGCTCG 59 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000087194 2 1 2 98 9 66889886 66889907 TCTTTGGGAAATTCTACTGCAC 59 66902397 66903412 TTCAGAGACACCTGGAGGA 60 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000034256 3 1 2 97 3 142781961 142781980 AGATTTGGGCACATACCTCC 60 142781881 142781899 ACAGAAGTAGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 1 2 2 80 1 142422408 142429031 CATACATGGGTTTCTGTGATGG 60 142418650 142418670 ACAGATTCTCTTCCTTCAGCA 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 3 1 1 162 3 81509453 81509472 CTTCTCTACCTGAAGGCCTG 60 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000084702 1 1 2 149 17 48444481 48455583 ATAAGGTCCTCCAGAAGCTG 59 48394099 48399201 CCTGCATACCTTTGATTGCC 60 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000084702 2 1 2 149 17 48444482 48455583 ATAAGGTCCTCCAGAAGCT 57 48394099 48399200 CCTGCATACCTTTGATTGC 57 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792 2 1 2 80 8 123326997 123327015 ATCAACCTCATCCCTCTCC 58 123316784 123326955 CGCAAAGACACCTATGTAGAC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112 2 1 2 82 2 189581789 189581809 AAGACTTGTCTCATCATTCGC 59 189581850 189583016 CGGATCTTGAAATCAATTCCGA 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000055473 1 1 3 84 4 181148156 181148399 CTCTGAAGAGGCATTCAGTG 58 181152759 181152777 CTGAACAATCACTCCAGCC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000066384 1 1 3 84 2 41158103 41261852 TCCTACAGTTTCGATGTGGAC 60 41261898 41261916 GAATTAGCCCAGACCCTGG 60 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138 1 1 3 94 2 40554293 40554312 GAATCAGAGAACATTCCGCG 60 40554369 40704835 AAGTCCTGGAAACCAGTCG 60 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000087597 1 1 2 60 16 19637819 19637837 GAGGAGACCTTCAGGAACC 59 19637563 19637586 CATCTATGTTCTGGTCTTCTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 1 2 2 80 5 100927223 100935914 TGTGAAGAAATATCGCGGC 59 100927161 100927179 CCACAGGATCTTCCAACGA 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 3 2 2 81 5 100927224 100935916 GTTGTGAAGAAATATCGCGG 58 100927162 100927180 CACAGGATCTTCCAACGAG 58 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000004350 2 1 2 144 13 99142405 99143762 TCAATCATGAGAAAGCGATGG 59 99143868 99143886 CACTGCCTCTGGTAGTCAG 60 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000078714 2 1 2 82 16 19659071 19659089 CAGAAACATCAGGAGCTGG 58 19658290 19658310 CTTTGAAGCGCTAACACAG 57 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 2 3 3 80 6 8320613 8320632 CTTCGTCCGATGAGAAACAC 59 8320191 8320570 CTGAAGGGTAATGCTGTGG 58 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 3 2 2 80 17 8516245 8516693 GTCAGCTTTAAGGTTGATAGCA 59 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 1 1 5 80 7 120771881 120772232 GACTTGGAAAGAGGTGTTGAG 59 120771821 120771841 AAGGTTTGTCTTTCCTGACTC 58 NA Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 1 2 2 105 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199591 220199609 TGACATCTGGCTTCACTCC 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 2 1 5 88 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80534709 80534949 TCTCTAGTGTAGAAGACTCCCA 59 NA Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 2 1 1 102 1 264893921 264893939 ACAAAGGACAGGTTCACAG 58 264896067 264896085 TTTCCAGCTCACAGATCTG 57 NA DesignNoJunction Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288 2 1 2 80 7 70460338 70460457 TCAGTGTAATGACTTGGTGC 58 70460277 70460297 CTCACAAAGAGTTGTTCTGGA 58 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 2 2 2 80 2 164611575 164614767 GATTTAAAGTTAGCGATCCGGAG 60 164614805 164614825 TTTGTTCTTCAGAGCACTTCC 59 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 1 1 2 80 2 164627237 164627257 GACCCAACATTTAAAGTCCAC 58 164627298 164627320 ATAGATCTCAGGTGCAATTCTC 58 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000057407 1 1 2 103 14 85272231 85272701 CTGAAGGGATTGGAGACAG 57 85272768 85272786 GAGGTCACTTAAGCCACTG 58 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 3 2 2 84 16 19913530 19913650 CCTCCACCCATTGATCCAG 60 19913464 19913482 CAGCAGGGTTGACTAGAGG 60 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775 1 1 2 80 7 75410585 75410606 TGCTGTTGGAGATTGATAACTC 59 75410216 75410545 CAGCTTCATCGACCTTTGAG 59 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 2 2 2 80 5 22393167 22469217 AATTGGGATCAGAGTAGGAACTC 60 22469254 22469275 AGGATCTTCGATAAGGACTTCC 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157 2 1 2 113 9 14568037 14568055 CAACAGATTGCTGTCCAGG 59 14568132 14568864 GATGGTGATCATGCCTTGC 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000089894 1 1 2 98 10 104141685 104141703 GATGAGGAGCTCCTCTGTC 59 104141047 104141302 TGGTTCATTCTGGAACAGGT 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000080788,ENSRNOT00000079513 3 2 4 125 4 152487487 152495350 ACCCTCAAGTATGGCACAG 59 152485508 152485526 TGTTGAGGAGGTACAGTCG 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000079513 2 1 4 80 4 152461619 152461638 TGTGCGAAGTTTAACTGTGC 60 152458824 152461578 CACCATCTTCCTCAGAAATCG 59 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000017859 1 1 2 84 9 60921455 60921473 TACGAGGTGAACTGGAAGC 59 60921515 60922004 GATTTATTAACCTCCCTCTGAAACC 60 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000011571 1 1 2 80 15 103213989 103214009 CAACTTGGCTACAATTATGCC 58 103208377 103208398 GATTCCAATCACTGAGAGGG 58 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130 1 1 2 80 5 101558225 101558246 ATCCACAACATAATGGTGACAG 59 101557100 101558185 CTTCTCCAGGTGTCTTTGTC 58 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 2 2 2 82 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935392 166935413 GAAATGTCCTTATGTGCTTCCT 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 2 2 3 80 20 13966651 13966871 TCATTTGCAGGTTTAAGGAGAG 59 13966911 13966930 GCAAGGGTGATATACAGTGC 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 3 2 3 80 20 13966652 13966871 CATTTGCAGGTTTAAGGAGAG 57 13966912 13966931 AGCAAGGGTGATATACAGTG 57 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 1 2 2 80 3 47488401 47488422 TCAACAAACTCTCATTGACAGG 59 47488457 47490278 GGTACATAGTCACAAGTGTTATCTC 59 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912 1 2 3 89 20 2205975 2206407 GACTTCGCCAACAAGTACC 59 2205904 2205922 ATCTGAGAATTCTCCCGCT 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450 2 1 2 86 15 52376449 52376468 CACCAACTTGAAGTACTGGG 59 52375428 52376403 CTACTGTATCCAATGGAGAGGT 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 2 2 3 80 14 22734017 22734039 CTTCAGCATACTGTCAACTACAG 59 22734075 22780251 ATGGCATTCTCCTTATAGGAAGG 60 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000010419 2 1 2 80 6 25076761 25087258 TTCATCAGGTACCTGCTGG 59 25087299 25087320 CACTGCTATGAAGGAATCAGTG 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 1 2 8 107 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709851 68709869 CTCCATGAGGGTCACTGTC 60 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 2 2 2 80 16 20408217 20408354 GTTGTCAGTGATGAGATCATGTG 60 20408390 20408412 CAGAAGCCTAGTAATGAGATCCT 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805 2 1 2 81 17 56960386 56962185 TGAGTGCTTTAGATAAGCTTGC 59 56960326 56960347 TCTACTTCATTCTCCGTCATCC 60 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000088070 1 1 2 119 4 136676785 136678205 ATTCTCATCCTCAGGTGAGAG 59 136678285 136678304 CCACTTGCAGTACAACTCAG 59 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000003512 2 1 2 96 X 82723524 82723542 GATGCTACCATTCGCTCCT 60 82705885 82723464 AAACACAATCTGTGGCTCG 59 NA Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 3 2 2 80 1 229049451 229050281 AGATCCAAAGTTCACAATCCAG 59 229050321 229050340 GTGTTCTCTTGACCTTGACC 59 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 1 2 2 110 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863377 102873766 CTTCTCATCCTGACGGTCC 60 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 3 1 1 80 3 2443628 2443649 TCTTCAGACCTGATAACTTCGT 59 2443049 2443067 CTGCACCTTCTGTGTAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 3 1 1 65 10 42942678 42942696 GGTACAACTCGAAAGGACG 58 42944137 42944158 GGAAGTTATCAGAAACCAACCA 59 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 3 2 7 82 17 57067669 57079367 TGTTGTTCAAGATGAGGAGAC 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 2 1 1 88 15 82081292 82081310 TAACAGACTCTGCCAACCA 59 82081221 82081242 GGTTGACAAATGTTGTTACCCA 60 NA DesignNoJunction Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000089615 2 1 2 173 10 65495505 65496563 GATGATGAGGAGGAAGAGGA 58 65495260 65495369 GTCATCAAAGGATGTGCGT 59 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000089615 3 1 2 173 10 65495504 65496563 GATGATGAGGAGGAAGAGGAG 59 65495260 65495369 GTCATCAAAGGATGTGCGT 59 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 2 2 2 80 15 36940141 36940159 GCACTGTACTTTGCAAAGC 58 36940202 36942782 AACTCTTGAAAGGGTCTCCA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000058735 3 1 11 103 6 99150487 99150505 ATCTGATGTCCTTGCAGGG 60 99151226 99151873 CTCTCCAAACTGCTTTGCTG 60 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000044095 1 1 2 80 13 34241206 34245705 AACTGGTAAGACGTTCCAG 57 34241144 34241164 TGAAAGTAGAGATGTGAAGGG 57 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000044095 3 1 2 81 13 34241207 34245706 GAACTGGTAAGACGTTCCA 57 34241144 34241164 TGAAAGTAGAGATGTGAAGGG 57 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000012095 2 1 3 191 13 52628706 52631322 GTCCAGAGGAAATCTAAGATCAC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696 1 1 2 80 1 102114895 102114914 CCATCTCCAACTCCCTACAC 60 102114506 102114852 AGTTGGAGACCATCAAGGC 60 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 2 3 3 80 20 20583971 20583992 CCATGGATCTCAAGAAGTACCT 59 20584029 20586518 GGTACAAGTAACTCTTAACGAGC 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000090009 2 1 2 87 15 84446993 84477270 ATGGCAAAGCACAAATGGAG 60 84446925 84446943 AAGGTCACATTTGGCAGGT 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000028219,ENSRNOT00000088037 3 2 6 81 15 37013937 37013955 AAGCCAAGGAGAAACTGGA 59 37011904 37013897 CTCATTAGATCTTGCCTCATTAGC 60 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405 2 1 3 82 5 117754341 117754359 CAGTAACCTGGGATCTGCA 59 117753144 117754296 GTGGTAAACACTTCTCCAGC 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000065300 2 1 2 90 3 8948675 8949554 TTCTGATGCACCAGATTGTG 59 8949607 8949625 ATGTCTTCTGCTAGGGCTG 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089805 3 2 4 90 2 78249580 78251288 CTACCTACTGTTACTGTTTGCT 58 78251336 78251357 TAGAATGGACTTGACTTTGCTG 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 2 1 2 80 9 78573997 78575739 TGCTTCATGAAAGACAACTTCC 60 78573938 78573957 TATGAATACAACCCAGGCGA 59 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000033512 1 1 3 138 8 71036616 71036634 CTACCAGGAGCATGGTCAC 60 71035720 71036515 CATCTTCCTGGTGCTTTCTG 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 1 3 3 80 20 27213401 27213419 GTGCAGTTTGCTTCAAAGG 58 27213461 27214015 GATCTCAATATACCTGTGCCC 58 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 1 2 2 80 3 93642686 93642706 AATAAGTCAGAGCAAGATGGG 58 93642746 93645856 CATCAGCATCTGAAAGATGTG 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 3 2 2 80 7 24070386 24072228 ATATTCCTGTAGTTCAGCTCC 57 24070326 24070344 CTGAATAGTTCTCCTCGCC 57 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 3 2 4 81 6 99203186 99203207 TATGCATCTGGGTATCATTACG 58 99184559 99203144 TCCTGGATCCTTGAATGCT 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 1 7 7 80 15 5507392 5507412 GACCAACTGGATAAGTGATGC 59 5506891 5507350 TGGAAGTTTCTGATGCGGT 60 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 3 2 2 80 1 78104235 78104253 ACTATGATGCCTTTGCTCC 58 78102137 78104192 TACTCTTCATCTGAAGCACC 57 NA Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837 2 1 2 112 17 10507310 10510493 TAACTGGAACATGGAGGCTG 60 10507217 10507237 TGTGGTCAGCTGTATTAACCT 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043 2 1 2 92 5 169576688 169579812 ATCATTGAAGAGACTGTGCG 58 169576615 169576633 GATCTCCATGGAGCTCCAG 59 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000081787 2 1 3 80 3 8636300 8636321 ACATTGATGAAGAAGGAGACGA 60 8636361 8636791 CTTCATCCTCCTCTCCTTCC 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 2 2 2 80 1 48724194 48726151 TGACTGCTACGTTAGGAGG 59 48724132 48724150 TAGAGCTTGTGTAGCCAGG 59 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383 1 1 2 80 15 4894540 4894685 CTGTCCAACAGGAAGAAAGTG 59 4894480 4894501 CCTTCGTAGCAATGTTCTTAGG 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000073502 1 3 5 80 1 257575476 257694218 CAATTGGGAAGTGATGCGT 59 257694261 257694280 ACTTTCCCACGAACACTAGG 60 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555 1 1 2 90 1 251203320 251203339 GCTCAAAGGCTTTATGAGGG 59 251207725 251213373 GATGACTCCATCACGGAGG 60 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 3 2 2 80 1 197913603 197913758 ATCAATGGAGGTCCTTCCC 59 197913541 197913562 ATTGTTGGGTGAAGATAAGGTC 59 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 1 2 2 80 13 105045621 105047220 CTATTGCTTTAGGAATGTGCAG 58 105045562 105045581 CATTTCCATCCAAGATCCCT 57 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855 3 1 2 109 3 123622764 123625234 ACTTCCATGCAAATGATCCC 59 123622674 123622692 GTCTACTTGGCACAAGAGG 58 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000079779 2 1 2 76 5 144106928 144106946 GGACTCTTCTTCCCAAACC 58 144107971 144107989 TTCACAGAGTGGCTCAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000088603 2 3 4 80 12 11234579 11235577 GAAAGCCATAAGCAGAGAACTC 60 11234520 11234539 TTCTTCCACTTCGCAATCAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 1 2 6 80 5 47931466 47933460 TCTACTGAAACAGCCTATTCC 57 47933501 47933520 TTGTCTCCAACTGAAATCCA 57 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000044143 2 1 3 88 3 93663847 93663866 ACCTTATCCCAGCCATTTCC 60 93661930 93663796 CTTTGCTGCTTCATCCGAC 60 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000006924 2 1 2 93 13 75126751 75126769 TCCAAGAGCATGTCCACAG 60 75126825 75142884 CATCATTGACCTTCTCCAGC 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 2 2 2 80 12 17254940 17257980 ATTCAAGAAGGATGTGCAGG 58 17258023 17258041 ACATCTGGGATGTCACCTC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 1 2 3 84 1 88586427 88587090 CATCTCGGTGGGATTTCAC 58 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 2 2 2 123 19 52181092 52193767 TGAAGTTTGCTGAATCCGAC 59 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 2 2 2 80 1 72772157 72772176 TCATGGATCTCCTATTGCGT 59 72772216 72772319 CTTCATTGAGCCAATTGAAGAC 58 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264 1 1 3 80 18 59998014 59998032 AAAGAACCTGGAGGAAGCA 59 59996894 59997973 GCACTAATCTTTACACATGCTG 58 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000015190 2 1 2 103 16 18699811 18699831 CACAAACTCACACGGATGG 59 18704780 18704799 CCATTATCCTGCACGTACTG 59 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190 3 1 2 83 7 73285454 73285705 AGAACGATACCACGTTTCAG 58 73285751 73285769 GACAGAGGCTTCCAATGAG 58 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 2 2 3 80 2 195883206 195883226 CTCCGGGAGGATATAAGTAGC 59 195880868 195883167 TTCTAGTACCACCTGTATCTCC 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000013026 1 1 3 103 6 107283897 107283915 AGATCACCAGTGCCTTCAC 60 107280631 107283829 CCCTAGAACCACAGGAGAC 59 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045 3 1 2 100 10 61209961 61209979 TCGGTGTACACCACTTTCC 60 61207914 61209899 CCAATATGTCGCTTTCTCTGC 60 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000002030 3 1 3 86 12 25511226 25513253 GACTTGAACTCAGTAATGTGGG 59 25511161 25511179 CGAAGAAATACGCTCGCTC 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995 3 1 2 80 10 13557347 13557366 ATTCAGCTCTTGCAAATGGC 60 13556030 13557306 GTGTACAAACTGCCTCTTCTG 59 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 2 3 3 80 5 169285362 169285380 ACGAAGGTCATCAGACCAC 59 169285423 169285524 GATGAGGAGGAAGGAACCAG 60 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 1 2 2 80 20 13606634 13607570 TGCAGATGACCATCTCCAC 60 13606572 13606596 CTCATATCTTTGTCTAAAGCCACTC 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 1 4 4 80 15 8895308 8898163 GATGTCTTCAGATCGCCCA 60 8895246 8895264 TGTTCAAAGGCCAACAGGA 60 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 1 2 2 80 17 5429959 5432558 CTCTGTTACAAACTACTTTCCTCG 60 5429902 5429920 GGGCATCTTTCACCATGTC 59 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 2 2 2 81 1 266113999 266114018 TACGTGGACACCTTTGTCTC 60 266114056 266114524 TATTCCAGAGGAGAAATACAGTCTC 60 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000002645 3 1 2 111 11 77474831 77474849 AAGAGGAGTTTGTGCTGCT 60 77472109 77474758 GTCTCATCTGTGACAATTCCC 59 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 1 2 3 141 15 11874676 11878821 TACTGACTTCACTCCAGGG 58 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000077952 2 1 2 85 1 81244834 81245479 CATAGCTGCCTGTTATCGA 57 81245528 81245546 GATGTCCTTGAGCTCAGTC 58 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000091057 3 1 2 82 11 65797621 65799296 CAACAAACTGCTCAGAGGC 60 65797557 65797576 CTTGGAAGCTGAGTTTCCAG 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483 1 1 4 80 12 5575502 5575521 GAGATCCGAGACATGATCCG 60 5574965 5575459 TAGTGCCGGAAACATGGAG 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000077167 1 1 4 85 12 5685404 5685429 CACATGGACGATGTACTGC 59 5685328 5685347 ACATTCTCTTCCCTCCAGTC 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094 1 1 2 80 9 65939826 65939847 ATGAAGATTGACGAGAAGTGTG 59 65931121 65934324 AAATTCCTCTTTAGCTTCTGCG 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000067393 2 1 2 99 14 115443073 115443095 CTAATTGGAAGAGACCTCCAG 58 115445936 115445955 GTTAGACTTGGAACAGAGGC 58 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 1 2 2 80 7 27089363 27089384 GCTTCTCAACTAGGGATTTCTG 59 27089424 27091023 GCTGTCCTCAGTATCATCGT 59 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 2 2 2 80 7 27094810 27095466 GGCATTCACTAACCAGTTACC 59 27095508 27095526 TAGGACGTCGTGTAAACCA 58 NA Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 3 1 1 62 2 190073944 190073963 AATGGTCACTACTGAGTGCC 60 190074150 190074169 TCTTTGAACAAGCTTTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 1 2 2 80 15 18543723 18544075 CGTGATGATAATCCAGTGGTG 59 18544117 18544135 TGATTGAGCTTCTGTGGGA 59 NA Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 2 2 2 80 15 18546076 18546334 CGAGAATTATGGAAGGCCCT 60 18546377 18546395 AAGGCATAGGGACATCAGC 60 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 1 2 2 80 5 173288635 173289542 GTGCTTCTTCAGAGTTCTGC 59 173289680 173289698 AGACTCAGACACCACAGAG 58 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 3 3 3 85 10 3342553 3360959 CTGGAATACATATAAGACTGGTCTG 59 3361169 3361187 CTGTCCTCCAGTTCACAGG 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000010991 2 1 3 126 8 68114180 68154064 GGATCTCTTTCATGGAGATTCAG 59 68092093 68092111 AAATGTACAAACGGCTCCG 59 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 1 2 2 80 14 13056813 13056833 TTGGTATGGGAAAGAACTGAC 58 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253 2 1 3 81 2 243736953 243736972 AGTCCTCATCGAGATGACAG 59 243737016 243738141 GGACAATGGCTTCATGACC 59 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 2 1 1 158 10 13541901 13541920 GCTGACATCAAGAACAACCC 60 13537961 13537979 CTTCATGATCAGCTCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 2 2 3 80 5 173257588 173257819 CATTCCATGGAGCATGTGTC 59 173257860 173257880 GACATCTCTGATTCGTCTTGG 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 3 2 2 80 18 63388241 63388260 GGAATGGAGATCTGTTCTGG 58 63384948 63388199 TTTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000001360 1 1 2 90 15 58655214 58655638 TTGACAATAGCTCTGGTGC 58 58656854 58656873 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927 3 1 3 83 4 183344292 183346868 GTAGAGCCCAAAGATGTGC 59 183344227 183344246 TTTCCTCAATGCTGGATCCT 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 3 3 3 80 3 95723752 95723964 AAGCAAGGATACAGGTGTG 58 95724008 95724026 CCTGTCTTCTCTGGTTCCT 58 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 2 2 2 80 6 80078310 80078328 ATACAGAGCGGAGACAGAG 58 80074106 80078267 CCAAATTTCTGACACAGTCG 57 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000081958 2 1 2 82 9 82437534 82437555 ACCCGGATAATAAAGAGTTTGC 59 82437598 82439124 CCGTTTGTGCTTGTCAGAC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 94 4 14186527 14186545 CATACTGGTCAAGCCAGCT 60 14187108 14188060 TGGTCCCAGTCTCATTTAGC 60 NA Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000077748 2 1 2 95 8 50602411 50603527 GGACACTTGGAGACATGGA 59 50602334 50602353 TAAAGATGGCTGACACTGGG 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488 2 1 6 80 4 154553985 154554005 AGTCGATGATGAAATCACCCT 59 154554047 154554801 ACAACGGGATCTGTGTCTG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000089146 2 1 3 112 10 84637058 84637775 ACATCCTCTAAGAGCCAGC 59 84636031 84636050 TTCTCCAACATCCTACACCA 58 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000087067 3 1 2 103 1 154054142 154054161 ACAATGCCTATGTGTTTCCC 59 154054227 154056364 ATAGTCGAGGACCTCTGCT 60 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000035113 2 1 4 80 13 79065952 79065970 GTGATCAACAGCAAGACGG 59 79066013 79066961 TGAAATTCCCTGGATCTGCT 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000084075 1 1 3 82 7 141347003 141348665 TCTCAGTGGTCTTCACTCG 59 141348711 141348729 TTTCATGGTCTTCAGCCGT 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 1 1 4 71 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71965794 71965812 TGTCTATCAAACTGCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984 3 1 2 85 10 43885486 43891530 GCAAGACTTCCGACTTCTG 59 43885419 43885437 ACACTTGAGACCACTGGAG 59 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016 1 1 2 80 8 70611405 70611424 GAGTGTAGTGTTGGAGTGTG 58 70611466 70612239 GAAATAGGCTTCCCATCCTG 58 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181 1 1 2 80 3 112713639 112716596 GGAACAGGGAGCAAGTAGG 60 112713577 112713595 TGCTGAATTCTGGAGGGAG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 2 2 4 82 17 72247454 72356850 CTCAAGAAGAGGAGGAAGAGG 59 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 2 2 4 87 20 3119760 3119778 AGGACCTACTTAGAGGGCC 60 3119828 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395 1 1 4 80 20 3120562 3120583 CTCTTAACTGCTGAACCATCTC 59 3120620 3121527 TTGGAGGATAATCTCAGAACAGG 60 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000027574 1 1 2 86 1 267143237 267143255 TTTCGGTTCTTTGAGGCAC 59 267098852 267122322 GGATAACCACACTGATTTCCT 58 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000005772 1 1 2 86 2 235852161 235852181 GACAAAGAAGCACCAGCAG 60 235850392 235850410 TCCTCGATAAGGAAAGCCC 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000070825,ENSRNOT00000071829 3 2 3 80 17 66481695 66481861 CCAGAAGAACTGGAAGAACC 58 66481903 66481922 AGCTCTTCCTTCTTCATCAC 57 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 1 1 1 69 X 72650794 72650812 GTTGACACAGCAACTCAGC 60 72651068 72651086 ATGTTGTTTCTGGGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 3 3 3 81 11 67251993 67252011 GCCAAGAAGGGAGAAAGAC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364 1 1 2 85 2 189337102 189337122 CCTTTATGCACATTCTGACCC 59 189336618 189337055 ATATGGTAGCTGGCCATCC 59 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907 2 1 2 113 X 85465766 85465784 AGCTACATCTGGTGACAGC 60 85467505 85483679 TAGTTACCTCCTTGCATAGCAG 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000091310 3 1 3 124 3 146396287 146407087 GAGGGCAGTTCCTTTAGTG 58 146396181 146396202 CTGAAACTCTGAGGATCTATGG 58 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471 2 1 2 80 17 63273006 63273025 CCCTTTATCAGCTACCAGTG 58 63273066 63278529 TAGTTGTTGGGACTAACTGTC 57 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 2 2 2 81 9 17225332 17225353 CTTGTCGCAGATTACTACATCG 59 17225395 17227329 TGCAGTTCAGGCTGTAGAG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 1 4 6 114 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031 1 1 2 98 X 127804673 127804691 AACTGAATGAGCAAGGCCT 60 127804753 127822350 TGGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000079156 2 1 2 82 10 67854604 67854622 ATTTGGCCAAGTTGTACGA 58 67854668 67855063 GTGTTCGATCTGTACTCGG 58 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910,ENSRNOT00000083511 1 2 3 80 1 247291656 247291674 CTCTTAAGCTCCTGCAGGT 59 247291718 247295975 CTGACTTCTGCATCCCTCC 60 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 1 2 2 91 8 116096803 116096822 CATCACAGTGATTGGTCTGG 59 116101241 116101259 ACATAGGCATGAGCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 1 1 2 85 6 111286933 111286951 GCCTAAGGGAGAGTACAGG 59 111283008 111284761 AGATCAGAACCTTGCCCTG 59 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000008503 1 1 2 80 X 135327984 135333589 GGTGCATATGCCTACAAGAC 59 135327923 135327943 TTCTGGTGACAGTCCTAATCC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521 2 1 2 81 6 53524731 53524750 ATGTTCTCCACCAGTCTGTG 60 53506438 53524690 GACTTCCAATACTTGCTTTGGA 59 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000058422 1 1 2 80 11 81714557 81714578 CCTTCAATGCACAGAATAATGG 58 81713699 81714516 CAGAACAACCTATCGGCAC 59 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054 3 1 3 98 11 67642219 67642237 AAAGAACAAGATCCGGGTG 58 67642299 67642479 CTCAGAAGAGCCTTCTTGC 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000088114 2 3 7 93 X 70637669 70641182 ATACAGGAACAGGGAGTGAC 59 70642436 70642455 GTGTCACTGGCTCATATGAC 59 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679 2 1 2 87 18 73585359 73585377 CAACAGGCCAATTGGACTG 59 73585427 73603597 ATTCGAAGTACCTGGAGCTG 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 1 4 4 77 2 250224581 250224599 AGGCAACGTGTATCATCTC 57 250224164 250224182 TAGTGAAACCGATCTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 2 4 4 78 2 250224581 250224599 AGGCAACGTGTATCATCTC 57 250224163 250224181 GTAGTGAAACCGATCTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940 1 1 6 88 17 77195636 77195654 TAAGTCACAGGCGTTCCAG 60 77195706 77195726 ACTCGGATGCACATCAGAG 60 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342 1 2 6 80 17 77185135 77189000 GGAGATCAGGATGACTGAAGG 60 77189042 77189060 GAGTCTGTCCTTGTGGGTC 60 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000090984 1 1 2 180 7 123100631 123101804 TGTAGGTGATGGCAAATGTG 59 123095891 123100490 ACCATCTCTATCCTTCTCCTG 58 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000027677 3 1 2 80 1 82099605 82099624 TCAATGCCATTCTCATCCCT 59 82097910 82099564 CAGTTAAAGCTTGTGAGGACG 60 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754 2 1 2 87 1 7371237 7371255 GTGGAAGTCACAGATTCCC 58 7364147 7371186 TCCTTATTGCTGCCTTGTC 58 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000061455 1 1 2 80 X 123487409 123487428 TCGGAGAACAACATAATGGT 57 123487852 123493323 TTCCACATGTGTACCATCC 57 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000025415 1 2 4 84 1 154442128 154444800 GCAACAATGAATGGCATGC 59 154446188 154446206 ATCCTATCATGCCCGTTGG 60 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000025415 2 2 4 85 1 154442128 154444800 GCAACAATGAATGGCATGC 59 154446188 154446207 TATCCTATCATGCCCGTTGG 60 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000091681 2 1 3 151 2 196638216 196638310 AAGTAACCAGTTCTCCTAACTG 58 196638421 196641478 CTTTCCTAAGAGCTCCTGTG 58 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370 1 1 2 140 1 163114613 163114631 TTACTCAGCTCTGAAGCGG 60 163103732 163114509 TCGCAGATATCCTTAGGCC 59 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000003198 3 1 2 99 13 102858938 102913729 CGGAGAACCATACATCTGTG 58 102858858 102858878 GTAATGGAGTTTCTACACCGG 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 1 2 2 80 3 128336308 128336428 CTGCGAGAAAGAGAAGAAGG 58 128336471 128336489 TCTTTGGACTTGGCTTCTG 58 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546 2 1 2 80 1 256664565 256664584 AAATGATGTAGTTGGGACGA 57 256660619 256664523 TCTCCTGTATTTGCTTCCAC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091840 1 1 10 89 7 117253868 117268109 CCTCAAAGATGAACGAGACC 58 117253489 117253507 TCACTGATGTGCCTTTGAG 58 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 1 2 2 80 1 73262721 73264249 CCTTCCTATGTCTTGTGATCTG 58 73252064 73252083 TTGCAGTGGATATGATGGGA 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000065632 3 1 3 166 1 260552335 260557893 ATTTCTAAAGAGCCGCTTGTG 59 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 1 1 1 78 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123042373 123042393 GAATAACTGACTCCTCGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000091828 3 1 4 107 5 141075461 141076134 GTCTGCTCAGATTGCAGAG 58 141074526 141074545 TCTACTTCAGCAGGGATCAG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 3 2 2 83 3 101908247 101910817 ACAGAAACGAACCAGTTCTG 59 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 3 2 3 81 18 63016855 63029868 CGGGACAAATCATCAGAAAGG 59 63029909 63029929 GTTTCTGTCACAAGATCTGCA 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000091346 1 1 3 148 12 11544123 11544141 CTACTATGACAGGCTGGCC 60 11540848 11543581 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000077340 3 1 2 94 1 53536311 53539501 CAGGGAGAACATTGTACATACG 59 53539556 53539574 TTGAGGACTTCCAGAAGGC 59 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 1 1 1 72 7 11322221 11322239 CAGACTCTGAGTACCCGAC 59 11323315 11323333 GGTTCTAGGTCCTCTAGCT 57 NA DesignNoJunction Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000008256 1 1 2 80 10 86204829 86204847 TGACAAGAATAGTGGGCCA 59 86204891 86208986 ATGTGAGGAGGACATGCTG 60 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 1 2 3 80 1 79066942 79077380 TATATCTCTACGTGTACAGCTCAC 60 79077416 79077437 GTGGCACTGATTCAATACTGAG 60 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000089897 2 1 3 80 4 38338324 38338345 AAGGCTGAAGACTTAAGAACTG 58 38338384 38378652 AGACAATCTCATCCTGACGAG 59 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457 1 1 2 80 5 147257819 147257838 TCAGACATTACGAGTTCGGA 59 147257881 147259599 CACGGCTTGATGTCATCTG 59 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 2 2 2 89 6 26572307 26572325 TACTGCTGTTCAGTCTGCC 60 26573758 26574106 AACACTGGACCTTGTAGATGG 60 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 2 2 2 86 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976087 56982456 CTTAAGATCTGTGCATATGACTCC 59 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 3 2 2 85 12 8116098 8116116 AGATCCAGGTACTCCAGCA 60 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 1 2 2 80 17 77686401 77686421 TAATCAAGTCTATCTGGGCGA 59 77680010 77686362 CATGGATCTTGGACTTACTCTG 58 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000081645 2 1 2 80 17 77647643 77647663 AACACCGTCAAGTGAAATTGG 60 77645516 77647602 TCTGTTGCTTCTCCAGTCTG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 1 1 2 110 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931511 220931529 GAAGGCTCATGTCCAAAGC 59 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 2 1 2 116 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931505 220931523 AGTCTCGAAGGCTCATGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 2 6 7 81 5 166101437 166116420 AACTCGACCAGTATTATCAACC 58 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 1 6 7 80 5 166101436 166116419 ACTCGACCAGTATTATCAACCC 60 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000089099 2 2 7 94 5 166072413 166075276 GGAAGTGGAGGCAAATATCTG 59 166072339 166072357 GCTGTGGAGAAATTGCCAG 60 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 1 2 2 95 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779452 142779470 CATAGAGGGAGCCATGCTC 60 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000080478 2 1 2 81 18 76710805 76710918 CTCACGAAGAACACTGAGC 59 76710238 76710256 GGCTGAGAAGTCTGGAGTC 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 3 2 2 84 3 5121016 5121038 GGATGTCCAGAAAGTTGTAAGTG 60 5122313 5122998 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 2 2 2 80 19 55417369 55422943 TGCTCATGGACGATATGGG 59 55417307 55417326 CCATCCGGTCTAAATTTGGG 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000051075 1 1 3 80 7 71065582 71069218 AGTTGGGAACACAGGACTC 59 71069260 71069280 TTGTTCATCCACTCATTGGGA 60 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053 1 1 2 94 10 46579433 46592846 CATCGAAGACATGCTTCAGC 60 46579358 46579376 CTGTGTCTCCTGTCTCACC 59 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 3 2 2 80 18 86365384 86383889 GATCATAACTGATGGTGGAACC 59 86383928 86383948 AGGATGACAAGTAGCAGTGAG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025045 2 1 10 82 9 95296578 95298733 CTATCCCAGGAATTTGAAGCC 59 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 1 3 10 81 9 95246250 95298734 TGTCTCAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 2 2 2 87 6 126710723 126710746 GTGCTAATGCATCTAACTATCCTC 59 126708771 126710682 GAAGATGTTCCTATGAAAGTCTGC 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428 3 1 4 80 7 124223892 124225790 GAAGATGAACAGGGTCCCA 59 124223830 124223848 TTAGCTGATCCCAATGGGA 58 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 2 2 2 108 20 45189546 45189564 AACTTTGCCCTCTTCAAGG 58 45158830 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 3 2 2 112 20 45158781 45158799 TGCTCTTCATGTGCATTGG 59 45147741 45158705 GAAGAAGGAGAGGACCTGC 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144 2 1 2 84 3 103753443 103753461 CTTCTCTGGCAACTGTTGC 60 103753509 103806659 GAGTTCTGATTCGGGTCCT 59 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000079727 2 1 2 106 3 103773681 103773699 TAGAAGACCCAGAGGAGGG 59 103773769 103806657 GTTCTGATTCGGGTCTGGT 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 3 2 4 120 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738393 79738414 GATCTGCAGGCTTTATTGTCTC 60 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 1 2 2 81 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827601 8827619 GAACATTGTTGCCCAGGTG 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 1 2 3 80 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 3 2 2 80 17 81995442 81995461 CATCATCCAGTTTGGGTGAC 59 81995499 81999522 CAGTAGCATCTATGTCTATAGCAG 58 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858 1 1 2 89 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658843 6659325 CCTCTCGAAGAGCTTCTCC 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586 3 1 2 83 1 15974756 16109246 CATGCTAGGAGATGTACGAC 58 15974692 15974710 AGACGGAAGTCAATGAACG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025 1 1 5 113 1 15844720 15844911 AGAACAAACCTTACCCACAG 58 15844987 15845005 GTTCTGACTTAGAGCAGGG 57 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 1 2 2 80 10 16724114 16724133 AGGAGGAAGAAGAGGAAGAG 58 16712059 16724072 TTTCATAGCCTGGTTCAGAG 57 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 2 2 2 80 10 16725145 16727753 GATTTCATGTATGAGCTGGATAGAG 59 16725089 16725110 TTTGCAGTCTTCCAAAGAAAGG 60 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000047666 3 1 4 85 8 53855023 53858139 AAGTACAGAGCGAAGCTCG 60 53854956 53854975 TCTAGGGACTTGAGCATGAC 59 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 1 2 2 80 15 27773200 27773458 TTTCCTTAGCTCTGTGCCA 59 27773138 27773156 AGTTCTGAGACCCGATGTG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000016340 1 1 2 104 11 69837670 69837688 GTAGAGGATGGTGACAGCC 60 69837756 69856144 GTTGCCATCCTTGTCACTC 59 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 3 2 2 80 5 147855879 147855897 CCGTACGAGGAAAGAAGCA 60 147854577 147855839 GATACCAAGTACCTGATTTGCTC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496 3 1 2 82 1 15484259 15488401 GAAGAACACAGTGTGCACTG 60 15488446 15488464 TGCTGTCACAGCAGTAGAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000082473 3 1 4 138 7 123634584 123634602 CCTCTTCTTCACCTGCCTC 60 123634056 123634485 CTGTTCTCTTGGTTTGAATGCA 60 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 2 2 4 108 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779539 226779557 GAGCCACTTAGCATCACCT 60 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391 2 1 2 82 14 20481095 20488296 AACGACGATGAGAAAGATCC 58 20481032 20481050 AAACCCAGTGACTCAAGGA 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 1 2 7 88 2 186122531 186122551 AGCACTTTAATAATGCGCTCC 60 186117950 186119088 TCTAGAGCCGTGTTCATGG 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000026587 1 1 2 80 1 199381341 199382254 GCTTGCTGGAAAGATTCTG 57 199381279 199381297 TGAGAGGGTTCTGTATCCA 57 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317 1 1 3 80 8 111770111 111770133 CCTATCATGGCAGAATACTATGG 58 111768487 111770073 ATAATGGGTTTGAGGATCAGC 58 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 3 1 2 66 8 11997797 11997818 GGAAATAGTTAACCTTGGTCCC 59 12160150 12160168 AAGAAATGAGCTGTCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000084017 2 1 2 80 1 57373855 57373875 ATCTGCATGCATTTATCGCTC 60 57373915 57382150 TGTAATCCAGCTGTAAGTGCA 60 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000003697 1 1 2 100 10 48035200 48037383 GAACCTAACAGAGAAACACGAG 59 48031548 48031566 ATGATGGTGGTGTTCACGT 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797 1 1 3 93 18 65172794 65285332 GGGCTCAAATGTAGAAGACAG 59 65288766 65288784 ATAGGGAGTCCCATCTCCA 59 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000018170 1 1 2 88 4 100298283 100298305 GGTACTTCTCAGAAGAGTGAGAG 60 100297644 100298236 TCCAGATCCCTGACAATGAC 59 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000074991 3 1 2 80 19 118967 118987 TTAAGCTTGACTATGCACTCC 58 118784 118926 AGGGAGTGTAACCTTCTTGG 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 1 1 2 98 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755997 78756342 CAAAGGAACCTTCATGAGGC 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 3 1 2 100 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755999 78756344 GCCAAAGGAACCTTCATGAG 59 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928 3 1 2 60 X 111131154 111131175 GAGTGAGTTCAACTCATACAGC 59 111136315 111136333 TGAGAGTTACGGTTCCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000048175 1 1 3 80 14 28659356 28659375 GTACGTGTGGAACAACTACC 59 28536241 28659315 GTGGTAGAAATCCCTGATCTG 58 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 3 2 2 148 10 34945761 34945871 AATCTGGATGGCCAGAAGG 60 34945982 34947861 AAGAAGGCTGCAATCTTCCT 60 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495 2 2 3 80 4 158242387 158242406 GTCAGAGGGACAATTCTAGC 58 158242446 158244179 AGTTATTGATGACAGAACGGTC 59 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000082669 2 1 2 80 17 76391273 76391292 GACAGTGACCATCAATGGAG 58 76389529 76389671 ATCACTTCCACAAACTCTCC 58 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548 2 1 2 80 7 120185467 120189241 GAGGAAGGAGAATTCTGGC 58 120189285 120189303 GAGAAGTAGCCGCTTTCTG 58 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 2 2 2 80 3 3845413 3845433 CAAGTTTGACATTGGGAAGGA 59 3844832 3845373 TTGTATAGGACTCGGTCTGTG 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601 3 1 2 86 6 126645991 126647025 AAACACAGCATGTCACCAG 59 126647071 126647093 GCTTGATAACATCTTGATCTCCC 59 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 2 2 2 81 7 125837262 125839292 GATGAAGTTGAAGAGATGGGA 58 125839335 125839353 TACGCTTTGCCTTCTTCAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000071930 3 1 3 81 4 183412737 183424209 GAGGATATTTGAGCTTTGAACC 58 183412677 183412696 CAGCAGCCTTCTATACTTCG 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000065448 1 1 4 80 1 200671085 200692398 ACTTTAGAACCAGAAGATGCCA 60 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 1 1 2 81 20 46236778 46236798 TGGTTCGCAATTCTACATCAC 59 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 3 2 3 80 6 129643813 129646856 CAGACACAGTTTATAGGCAAGC 60 129646895 129646915 TTCTCTTCACATGCATTGCTG 60 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 2 2 3 80 X 77137647 77137665 ACTAACCTCTCCAGAACCC 58 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837 3 1 2 80 11 84522584 84522603 AAGGAAACCTCAGAAAGGAG 57 84527818 84533121 CGGCTATGATACCTGTCAC 58 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 1 3 3 80 1 273945315 273945335 GGACCACATCATAATCATCCC 58 273945373 273946208 CCTATTATGTTGACCTTCACCAG 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925 3 1 3 94 1 143180917 143180935 TTGGTTAACACCTTCCGTG 58 143179899 143180860 TACACATACCCTTTGGGAGG 59 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000000683 2 1 2 83 20 30791688 30794220 TATCCAAGATATCGCTGGCA 59 30794264 30794284 GTTAAGAATGAGGGCTGAGTC 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080419 1 1 12 80 20 3363583 3364249 GAAGCAGAGGATAGGTCGG 59 3364293 3364311 AGCAACTGTATGCGTAGGT 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 1 1 1 99 7 74327028 74327046 GAAACCCAAACCTGTAGGA 57 74326944 74326962 CATATGACGAATGGACGCC 59 NA DesignNoJunction Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 2 2 2 80 10 109107494 109122262 TGTCTACAAGACCATCATGGA 59 109122301 109122322 AGTGCTTTCTCATAGTTCTTCC 58 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814 1 1 2 80 1 264724775 264724796 AGTGTGATATTAGGGAAGATGC 58 264724836 264730055 TTGCTGCTGTAACTTCTACC 58 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 3 2 2 82 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141008 11142016 GAAGGATAAAGCCCTTGTGAG 59 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 1 3 3 80 13 85398133 85398153 CTCAAAGAAATCACCGAAGGA 58 85397249 85398091 GACTGTCTCCTCTTTCCGT 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 3 2 2 80 3 114642687 114642706 GGCCTTCATCAATTCTACCC 58 114642749 114642933 TAGGAGCAGATGACCTGGA 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000091242 3 1 2 85 10 37048175 37048195 AGCTGGATGACATTCTAACAG 58 37049125 37051308 ATGAGTATCTTCTGGAGGGT 57 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000011592 1 1 2 83 X 1712900 1713409 CTCTGCACCAGAGATTGTG 58 1712835 1712853 TCATCTGAGGATGTGGCTG 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000060179 2 1 3 89 14 22122669 22122688 TCTGGTCACATTACAGAAGG 57 22122750 22124753 ACTCCCTAGATCTCTGATCTC 57 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107 1 1 2 80 8 53417693 53417711 ACGTGGCTGTGTAATACTG 58 53417752 53418394 CAGAGATACAACACTAAGAGCC 58 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000084918 2 1 3 135 20 3731526 3731696 GACAAGAACCTCATGCTGC 59 3731248 3731428 TCAGGGAGCCTTTCATAGAC 59 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 3 2 2 81 7 124001736 124004078 GCCAAACAGAATTTGTATGACC 59 124001676 124001694 GGGCTGCAAACTTCATCTG 60 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000078744 3 1 3 105 10 86383146 86383473 GGAAGAGGATTGTGCTGTG 59 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000065431 3 1 2 81 19 57103750 57106511 TGTCTTTGCCCGTATTCAG 58 57106556 57106574 GACGTTGTCTAGGTACCAC 57 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860 1 1 2 80 19 57106242 57106518 CCTATGGAAATATTCAGAGCAGAC 59 57106556 57106575 AGACGTTGTCTAGGTACCAC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000081403 1 1 3 114 20 3309953 3309971 TTCGGAGGACTCGTAACTG 59 3310049 3315196 CAGTTCCTCAAAGAACCGC 59 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 3 1 1 61 7 75286744 75286763 CGAAATTGGAGACCATGCAG 60 75281143 75281161 GAGCAGTGAATGGCTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913 1 1 2 90 X 2116439 2116457 GAAGCACTGCAAAGGAGTC 59 2105543 2116385 TTTGGATCAACGTTCTGCC 59 NA Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 3 2 2 80 1 101413104 101413122 CAGAGAATGAGTTCTGCCC 58 101413166 101413412 GTACTCGAACCATGCTAGG 57 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 3 2 2 80 2 188562603 188564539 AAATCTTCCCTGAGATTCTCCTC 60 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000065720 2 1 2 80 9 96905259 96905277 TCCTACTCAGTCTCCAGTG 57 96905321 96970467 TTCTTCTTGCTCACTGCTG 58 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000082855 3 1 2 84 11 87061770 87061788 TGGTGTCTTGGCTCTAGAG 58 87061836 87063144 CTTGGAACAACCTGGTCAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494 1 2 3 98 19 9774386 9780740 GGACTGGAAGGAACATGAC 58 9774306 9774324 TGGTAGGTAAGGATGGCTG 59 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 1 2 2 80 10 49191268 49191287 ACTACGATTCGGAAGATGGG 59 49188371 49191225 TGGTTTCCACGTCTGAGTC 60 NA Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043 3 1 2 113 6 52122157 52131594 GACTCGTACAAGGTTACTCAC 58 52131666 52131687 TTTCACCTTCCTTACTTTGGAG 58 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 3 2 2 81 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384457 148384562 TCATGATCTCCTTCTCATCGG 59 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000021196 3 1 2 130 7 126444030 126465675 TCTACGTGAAGCTCAGAGC 59 126443918 126443936 GATCACGATGATGGCATCG 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000080966 1 1 2 88 2 196145614 196148410 GGTTTCTCGAACAGCTTGG 59 196148462 196148480 TCAGAAGTTGGCTTCAGGG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000045766 2 1 3 80 9 73427944 73429558 CCAAGGAAGATTTACTTACAGCC 60 73429597 73429616 CTAAAGGCTCAGCGAATGAG 59 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346 1 1 2 80 11 87422442 87422460 GTCGGCCTCCTTAAGTCTG 60 87418310 87422401 TCTGCTTACTTGGATACCAGAC 60 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852 1 1 2 80 X 70373737 70377461 GTGATGTCCATGGTTGGAG 58 70377504 70377523 TTCAAAGTACTTTGCCACGG 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 2 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696096 238696117 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 3 3 9 81 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531 2 1 2 80 4 86375698 86375716 AAGAAGCGTTCTCATGGCT 60 86360511 86375655 CAAAGGAGGCTTGATGACTG 59 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000003438 1 1 2 82 17 90701130 90701385 GGACTTCAGGGAAGGATCTC 59 90701429 90701448 AGGTCATGTTCCACTGAGTG 60 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879 3 1 2 81 14 36687233 36718157 CATCTGTAATATGGGCACCA 58 36718198 36718219 GAAGTAGTGTTCATTGATCGGA 58 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 3 2 2 80 2 256685093 256686316 TTCTACCGACTTGGCTCTC 59 256686360 256686378 CCGTCCACATTCATATGGG 58 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310 2 1 2 95 8 5685702 5686258 GCTCCAACATAAAGTCCCAG 59 5686316 5686334 TCCTGGAGAATGTGAGTGG 59 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000003638 2 1 2 82 18 312838 323148 GATTACAAGGCTCTGAGGGA 59 312775 312793 ATGGCCTTAATGGACTCCC 59 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289 2 1 5 80 1 259411979 259412490 CTACTAAAGTGGATCGTAAAGGC 59 259411921 259411939 TGCTAGTGTGAAACGTTCG 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198 3 1 2 87 5 149047765 149060398 CTACCATATAGTCATGAGCGTC 58 149060446 149060464 CATCTTGGAGAACCTGCAG 58 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 2 2 3 80 4 161731671 161731690 TAATCTTCTGAAGCTGCTGG 58 161731536 161731628 GGAAGATCCTCAGGATCCA 58 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 3 2 2 80 1 142155170 142155188 GACAGTCGAGTAAGTCACG 58 142154984 142155126 AAAGACCACCACAAACCTG 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 3 2 2 83 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712680 41712703 TCTGACTGGTAATATTCCTCTTCC 60 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000074245 1 1 2 87 7 118715095 118715119 GAGATCTTTGAAGATTCTGATGGAG 60 118715163 118717566 AGGCATCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000068199 1 1 2 80 3 63412287 63421102 AACTGCAGGTTCCTTTCAG 58 63421145 63421164 ACTCAATGTCTGCACAAAGG 59 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491 2 1 2 83 19 38091356 38111347 CACTTTAGATGATGTGAACGAG 57 38111391 38111409 GCATCTCTGATCACCTCTG 57 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 3 2 2 80 8 72235633 72237231 AAAGTAAATGGAAGTACGGCTG 59 72235574 72235595 AAGGATAGCATTCATGAAGCAC 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202 2 1 2 80 12 30151052 30180043 ACTATGAAGATTGGAAGGATGC 58 30148255 30148273 GCTCTTTGAGGTCTGTCAG 58 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 2 3 3 80 18 70713729 70713749 GTCATTCTGGTTATCCAACAC 57 70713790 70716118 TTCTGTGTCATGAAACCCTC 58 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000089473 1 1 2 80 6 93507342 93507366 GTTGGGCTATAAAGATCTCAATCTC 60 93507404 93507562 CCGCTGTCAATACTGTCAC 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000089473 2 1 2 80 6 93469091 93469109 CAAGGACATCTGATGGCTC 58 93469150 93483665 CATCAAACACCACAGTATACCA 59 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 2 2 2 150 1 222170579 222170597 TGGTTGAACCTGAGAAGCT 59 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 1 2 2 80 4 56857997 56859680 CTTTGCTCAGTTGTACTCTACTC 59 56857939 56857958 GCAGCCATGATAAAGAGGAC 59 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000017291 2 1 2 84 18 3216678 3216697 TGCTTGGCAGATAACTTCTC 58 3216741 3219873 GTTTATCACCGTGTATGTTAGG 57 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 2 1 1 60 14 44613098 44613119 TTTAACAGCTGTCTACACTGTG 59 44548524 44548542 ATGCCACACTTTCGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 3 2 3 87 11 82753128 82753146 TCAATGGCTGTCAGTCTGG 60 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000090402 1 1 3 80 1 87097352 87097371 TCACCAACCTAAACAATGCA 58 87095162 87097311 CTACAATATCCTCAGCATCCA 57 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 3 2 2 80 7 142324889 142324910 TTAGGAACTGTCAGTTCATTGG 58 142323884 142324848 TGATGAGTTGATCCTGGGT 58 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189 1 1 3 91 12 25450328 25452061 TTTGCAAGGAAGCCATCAC 59 25453985 25454005 TTTCTGAAGGGACATGTTGAG 58 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296 3 1 2 80 6 64274498 64281429 GAATGATCTTCATCAGGATGGAG 59 64281466 64281487 GGCCAGATACATTTACATTCGT 59 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 2 2 4 80 X 115598873 115603845 TGTATCTACAGCTAACCTGTCTC 59 115603880 115603903 GGATAGTTGTATGAGGTAACTGTG 59 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 1 2 3 80 20 35279203 35287292 GGGTCAACATCATGTGTCAG 59 35279142 35279162 TTGTCAGACATTAACCATGCC 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 2 2 2 80 17 81222923 81222942 TTGAATACTGCTGAGGACTG 57 81222985 81233696 ACAATCTTTAGGCCCTGTG 57 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000082791 3 1 2 80 4 109474574 109475468 CTGGATTCCCTACATCAGCT 59 109474513 109474533 GGTCTGTGGTTTCAGAAACAG 60 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 3 2 3 99 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563949 82563968 GTCAAGATAAGGACACAGGC 58 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000079745 2 1 2 121 2 123279037 123280053 CCAGAGATGTTGAATCACCC 58 123278935 123278955 CATTTCCCTAAGGTACGTGTG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758 3 1 3 81 13 52430666 52435263 CCCTTTCAGTACAGATTACAGAC 59 52430607 52430627 GGCTGGTATATCCATCAAGGA 59 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000091578 2 1 2 80 2 198997767 198997790 GACAAGGCAGGAGAATGAG 58 198997834 198997852 TCCACCACTCTGTCATAGG 58 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660 1 1 2 80 3 122006608 122006629 TACTACACTGTGGAAGATTCTG 57 122001149 122006567 ATGAAAGGCTTCCCAACTG 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600 1 1 2 81 6 136418660 136418678 GAACTTCAAGACATGGCGG 59 136416117 136418615 GTAAACGCTGTTCCTTGGC 60 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000085670 1 1 3 80 2 250763231 250765228 TTTGTCGGATATGACAGTTGG 59 250763171 250763189 TGTCCACAGGTACTGTACC 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122 1 1 2 80 7 12164273 12164291 GAGGAGGTCACATCAGTGG 60 12164334 12167377 ATCTGTACTGCTGGTACGTG 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000027987 1 1 2 87 1 87187963 87187983 CTCCAGACCTCTACATTCCAG 59 87188141 87188984 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000028814 2 1 2 81 2 198829820 198830314 ACTGAGAGTCAGCACTACAG 59 198830358 198830376 CCCGGAATTGGAAGAAGTG 59 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 3 1 1 60 1 163807144 163807164 GTCTACACAACAGTGAAGTGG 59 163809699 163809717 TTACACTTCGTTTCCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 2 2 3 130 18 15463871 15480352 GCCAACACATACCTCTTTATGG 60 15480442 15494600 CCTTCGGGATAATCTGTCCC 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984 2 2 4 80 7 78462380 78482264 CATTCGAAGTATCGCTCAGG 59 78482306 78482325 ACTTACATCACTGTCCGAGG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 3 2 5 81 6 80235407 80235430 GCTTAGAGTCATCTTTAAAGGAGG 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916 3 1 2 135 15 34342137 34352406 TAAAGTGAAGACGCTGACTG 58 34341712 34341730 TTTGCCACTGTAGATGAGC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015420 3 1 3 84 5 127651597 127651615 GACTGCACAATCACCATGG 59 127648923 127651549 TACCTTGAAAGAAGGCCGA 59 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914 1 1 2 80 7 31792312 31795024 CCAACAAGCTTGAGTCTACTG 59 31795065 31795084 CTTCCTGTTCAAACTGGGTC 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013937 2 1 2 97 4 28647767 28647790 GTTCCTCACTTATATCCTGAACTC 59 28637801 28647712 TGCAACTTATAGGATCCCGT 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 3 1 1 103 7 11625400 11625418 AGGTACTAACAACGTCGCC 60 11626365 11626383 TCATCAGTTCTGACGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 2 2 2 80 15 34495507 34496895 CCATCTTCAGGACCTCTGC 60 34496939 34496957 CCTCAATCCTCAGCTCCAG 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 1 3 3 87 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 1 3 3 80 4 161954335 161954353 GTCTAGCTGACTGTGGTGG 60 161953931 161954294 TCAAGTTCCGTAGGAATCTCAG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028249 3 1 7 87 1 83747903 83749337 TCTGGATTCCTCAGACTACCT 60 83749415 83749434 CAATGTGGCTATGGTGAAGC 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 2 4 7 89 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714911 83749627 CATGTCATAGAGCTGCCCT 59 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000083395 2 1 2 80 8 13569783 13584662 GCACAAGGTAATAATGAGTCTG 57 13569724 13569743 TTCGTCTTCAAGTACTGCTC 58 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577 1 1 2 81 8 13572014 13572032 GAGTGCTCGTGATTTGGAC 59 13569774 13571969 TATCTCCCACAGACTCTGC 58 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000073105 2 1 2 80 12 31233301 31238044 CAACTGGAGATATCATGGAAGG 58 31233242 31233261 CGTAGTAGAGAAACGTCACC 58 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586 3 1 2 80 12 31233305 31235253 GCGACCGTAGATATCATGG 58 31233243 31233262 GTAGTAGAGAAACGTCACCC 58 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506 3 1 2 159 2 85744232 85753808 AACAGGGAGGAAAGATACTGC 60 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 1 1 3 80 2 261399424 261399442 TCAGTGCCTAGAAAGCCTC 59 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 3 2 2 80 15 3094068 3094086 AAGGTGAACTCGAAGAGGC 60 3056948 3094026 GACATCATTTCCTGTAGCCAC 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092 2 1 2 140 10 47950574 47950592 CTTCTTCCTCACCTGTGCT 59 47949961 47950221 GACTTGAAGCTCCCTCCTG 60 NA Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150 2 1 2 141 17 89923570 89923589 TAGAGATGCTCTTCCTCTCG 58 89881467 89881487 GTTTCATACACTGATCGTGTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059 2 1 2 81 4 57745770 57758319 TTCTTGAGAGGCCACAGAC 59 57758360 57758382 CTCCAAACACATAGAGATTGGTG 60 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 3 2 2 84 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121440 ATATTCACACTCTGTCCCTTAGAG 60 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302 1 1 3 80 1 189974768 189975001 TCTAGAAGTTGGTTCTCTACCT 58 189975854 189975874 ATCATACATACGACCAAAGCG 59 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000091370 1 1 2 83 17 5613821 5613841 TTAGAGGTTGAATTAGCGGAG 58 5613885 5613990 TCATACTTCCTCAGAGTCGG 58 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000081679 1 1 2 137 8 17496894 17496912 TACAATATTGGGCCTGGCT 59 17485229 17485508 GAATGACATACCAGGCTCTG 58 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000091319 1 1 3 108 7 40309614 40309632 ACTAAGGCACCATCCTGAC 59 40309523 40309544 GGTTTCCATTGAATTCGTTCC 58 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 3 3 5 80 8 39392764 39404631 GACAATCTGATGGTGAAGGC 59 39392703 39392723 GTCCTTGCAGAGTTCATTGAC 60 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 2 2 3 85 6 135025758 135026358 GCCTTCAGATCAACTCCAG 58 135024800 135024820 TGAGTCTCCATCATAAGGGTC 59 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 3 2 2 80 15 33371818 33371838 GGGTGTTCCTGTATACTTCCT 59 33371290 33371780 AGAGTTAGGGACTCAATGAAGTC 60 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000081373 3 1 2 80 15 39658031 39658049 CAAGCGAGGAATCACTGTG 59 39658090 39669076 TGAGTACTGTAATTCTCTGCGT 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145 1 2 3 80 17 6013635 6070590 CGGACACATTTGTTCAGCA 59 6013573 6013591 AAACTTTCCCAAAGGCTCC 58 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 3 2 2 81 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000078453 3 1 2 97 5 173337584 173337602 AGAGTCAAGATCCCTTGGG 58 173337224 173337525 GGATGTAGGACCAAAGTTGTC 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 2 2 2 80 2 266146429 266146447 TGTTTGATGGACAAGCCCT 60 266146491 266153478 CAGTGCGGATGAATCTCCT 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000081601 2 1 2 82 14 66925897 66926777 CGTTGTTCAGCTAAAGAGCA 59 66922464 66922482 AAGTCTGCAAAGCAGTCTC 58 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 1 2 2 80 4 115265432 115271511 ACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000078494 1 1 6 80 1 41555595 41561428 TCCAGCCTAAGGAATCAAGG 59 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 3 1 1 70 1 213745590 213745608 GTACCTGAATCTGTGCTGC 59 213744990 213745008 CTACCTTCTTGTCTCGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000058803 1 1 2 80 14 71105117 71110766 CCACTCAGGATGTGATGGT 59 71110807 71110828 TAGTGATTAGCCTTTCGTCCTC 60 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 2 1 1 75 3 122930730 122930748 CTCACCTCCATGACTCACC 60 122930787 122930806 GACACAAGCAGTAAGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000079466 3 1 2 80 16 47917209 47919992 GAAATACACCACAGGGTCGA 60 47920034 47920053 TAAGAACACCAAGAGCTGGT 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 2 2 2 80 20 25064983 25120705 CTCATCGTGTCAGCTTTGG 59 25064921 25064939 CACTGTTTGCACTACAGCA 59 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 3 1 1 144 1 78808852 78808870 GGATCTGGCTCCTATGGAC 59 78810332 78810350 GAGCTGAGAAGGATCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978 2 1 2 81 11 87373772 87373792 CTGCTTCAATATTGGAACTGG 57 87373834 87373944 CTTCTCAATCTTCACCTGGA 57 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610 3 1 3 80 4 164445932 164445953 TGGCGTAAATGTATACAGACCT 59 164439030 164445893 GGTCCTGAAGGAACTTATCCT 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 2 2 2 108 7 49386173 49531755 GGACAGAGATGTTGCAAGAG 59 49531826 49531844 AAACTCACTCTGAAGCACC 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000075078 2 1 3 80 1 217565145 217573321 GAATTGGAGGAACTCGATAAACC 60 217573360 217573379 TTCTATGGCCACGTTCTCTG 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484 2 1 3 80 1 217565153 217573321 GGAACTCGTGGATAAAGATAAACC 60 217573360 217573378 TCTATGGCCACGTTCTCTG 59 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 3 2 2 82 7 144058464 144058482 CAGTTCCTTGAGGATGGCT 59 144058528 144058662 GTTTGTACTGGCCATCCTG 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084322 1 1 5 91 14 71629418 71629436 ATGCTCTTACTTCCGGCTG 60 71629486 71631483 GCTGATGGTTCATCATATACATCC 60 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 3 2 2 146 8 116882792 116883102 CAGTGAAGCGTATCACCTG 58 116882664 116882682 TAGTCATGGTAGCTGTGCC 59 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 3 2 2 80 11 89036382 89053527 CTACAAGAGGAAGGACACCA 59 89036321 89036339 AGGAAGGCTTGTTCAGAGG 59 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000028854 1 1 2 80 3 123597650 123597669 CTCCCTGATACTCATCTGGA 58 123597350 123597609 ATTGCAAACCATTCTAGGTCC 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858 1 1 3 80 1 48051109 48051127 AGCAGAACATCCATAGCCT 59 48051170 48052076 GAACTCTCACCTTCTTCCAG 58 NA Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 1 2 2 85 5 133872161 133875346 GGAGATAACGGATGGTCCC 59 133875395 133875413 CATTCACATTCTGCTGCCT 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000081621 3 1 2 98 9 16071509 16071530 AACAGTGACATCATGAACTCTC 59 16072966 16072988 TCCTCTAACCCTTATCGCTC 58 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000081291 1 1 3 80 1 198311157 198311180 GAAGAAGATACTATTCCAAGAGGC 59 198310959 198311120 ATGTAAGGTTCTGCTTCCTCC 60 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 1 2 3 80 13 56234225 56235258 GGGCAAGCAAGATATCTTCTG 59 56235300 56235318 CCTGTGCATCAACAGAGTC 59 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083 3 1 2 198 5 90971973 90975847 CCGACATAGAGTCAATTCAAACTC 60 90976002 90998809 GTTTCGGCTCACAATATCCTC 59 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 2 2 2 82 5 150472357 150472375 TGTGGATCCCAGGATTTGG 59 150472420 150473333 CGCCATTCTCTGTTTGTGAG 60 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681 1 1 2 80 5 150466865 150467739 TCAGATAGCATTGATTGGCC 58 150467780 150467800 TTACACTTCAGCTCATAGAGC 58 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681 2 1 2 80 5 150466866 150467740 CAGATAGCATTGATTGGCCT 58 150467780 150467801 TTTACACTTCAGCTCATAGAGC 58 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000011070 1 1 2 120 7 130250588 130250607 ACATCAGTGAAGTCATCCGA 59 130251951 130252895 TACTCAGAGAAGGCCAGGT 60 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270 3 1 2 111 2 95036120 95037362 CCTGCTATGAGAAACTCTCCA 59 95038770 95038789 TCAGGACTTCTCCAAAGTCG 60 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 1 2 2 94 9 16303760 16304244 TCGATCTTATTGGAGACCCAC 59 16304379 16304397 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000080340 3 1 2 84 5 147133882 147133900 CTTTCCTGGCTTAGAGGGA 58 147131973 147133335 AGCAGGGTGATAGAAAGGG 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000068185 1 1 2 90 4 165621097 165621115 TAGAAGGGAGTCGCTATGC 59 165612404 165621043 ATCTCACCAGCATTACGGG 60 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000068185 3 1 2 93 4 165621097 165621115 TAGAAGGGAGTCGCTATGC 59 165612401 165621041 CCAATCTCACCAGCATTACG 59 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 2 2 2 81 2 12102690 12104239 GTTTAGCTCTGAGAGGTGAG 58 12104281 12104301 TCTTGCTTCTGTTCTTCAGAG 58 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 1 2 2 80 16 6980726 6981070 GAAAGTGGTGGAACAAGAAGG 60 6981303 6981321 GGCAGGATGATGGTAGGAG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000079201 3 1 2 86 12 39371179 39371197 CCTCAGTGTCCCATCTTCC 60 39369883 39371130 AAGTTTCAGCAGCTGAACTG 59 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 3 2 2 80 4 62280552 62280572 CAATATCAAGAGCATGTGGGA 58 62280612 62281674 CCAGCAGTTTCCTTATTTGGT 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 2 3 3 80 5 134206570 134206590 ACTATGTGAAGGTGGTTCTGG 60 134205114 134205839 GGAGCAAACCATAACCAATCC 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000090192 3 1 3 80 X 71193971 71194152 TCCAGGCAAAGATACAGAGTC 60 71194191 71194212 GCAAACCATAGGAAGAACTAGG 59 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312 2 1 2 80 14 44915834 44915853 GAAGTGCTTCCCTCAATACC 58 44915896 44917731 GTCCAAGGATAGCCATGTG 58 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 2 3 3 80 13 56603687 56604287 CTGCAGGAAAGAACAAGAGAC 59 56604326 56604347 ACTTTGAATGTCCTCTGTATCG 58 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181 2 1 2 80 12 32533695 32533713 AAGATGGCACAGTACAAGG 58 32533754 32594997 ATCTGTCAGAAACCTTAACCAC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000090697 2 1 18 84 1 43454879 43474988 CTGGTCCAATGCTATACGC 59 43475036 43475054 ACTCAACTGCCCATATGCA 59 NA Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 3 2 2 81 18 38329673 38329691 CTGTCTCAGTTCTTCGCCT 59 38321401 38329629 TCATTTGGGTTGTCATCTGC 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000091113 2 1 2 106 9 17107088 17107106 GAACAGCTACACAGCATCC 59 17107414 17108136 TCTCAGCCTTCTTGATTGC 58 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949 3 1 2 81 8 22161435 22161454 GATGCCAAGTATCACATGCA 59 22155432 22161393 ATAATCCTTCCTCCACTCCAG 59 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000022801 2 1 2 85 5 59017878 59020275 CCTGGAAGATGAAGTCTATGC 58 59017813 59017832 GGGAAGTGATGTCATTGAGC 59 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 2 2 2 80 5 6020357 6020378 AAGAATTTAAGGGAAGTGAGGG 58 6019873 6020319 GTTGTAATAGCTCTGCTTACCA 58 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 2 2 3 81 12 36695272 36734421 GCAGGTGCTCAAGAATGTC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817 2 1 2 80 12 40510567 40514898 AGAAAGCCATCAAGGAGAC 57 40514942 40514960 GACCACTAATTCCAGCTCC 58 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000068407 2 1 2 80 4 156780957 156780981 GATACATCAAGTTCAGTACCAAGAG 59 156781019 156784679 CTTAAATGCCAACCCGAGG 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000057435 2 1 2 80 12 40447490 40448820 CAGTTTATGGAACAGAAGGGTG 59 40448861 40448879 TGAAGAAAGGAAGGCCTCG 60 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 2 2 2 80 7 41186208 41189738 CTTCTTTCAGGTACTCATGTAATGG 60 41189774 41189794 GATCCCAGTTTGAGAGTTCAC 59 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000079783 1 1 2 80 19 57458363 57458382 CTTTGTTTGAACTGAGCCGA 59 57455884 57458320 GGGACAGAATTTCAGCTCG 59 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 2 2 2 80 X 14965037 14965150 GATATCTTTGGGTTTATTGGCTCC 60 14964980 14965000 TACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 1 3 6 85 9 17351566 17351584 ACGTGTAAATGTTCCTGCA 58 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 3 1 1 61 8 76479840 76479861 CTGGGAAATAGCAGAATTTGTG 58 76479799 76479818 TCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000056724 3 1 2 81 9 97190497 97190515 CTTCAGTCCTTCTGCAGAG 58 97186467 97190453 TCAACCACATTCCGTATCTG 58 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 3 2 2 80 3 61440231 61441705 CACTGAAGGAGGAACAATACC 59 61440171 61440191 TTCACTTTGAGCCAGTTAGAC 58 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000006408 1 1 2 80 3 122141381 122141399 AAGGGCTCAACTTCTTCCA 59 122148170 122150145 GTCATTTGTGTCCTGGATCTG 59 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000083912 2 1 2 81 13 56941973 56941991 CCTTCAGGGTCACATTCAG 58 56941504 56941928 AAACACATTCCTTGAGGCA 58 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000083587 3 1 2 96 1 116674235 116674255 GTTTACAACAGGCACAGACAG 60 116674313 116679772 GTTGCCGTGTCTTTCTGTG 60 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895 1 2 3 82 11 20689206 20700765 CAGCTTACCTGAAAGATGGA 57 20700810 20700828 CCCGTCTTCATGGTTAGTG 58 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 3 2 2 80 9 10998334 10998355 ATATCCATTTGCATCCAGAGGA 60 10998396 10999109 GGCAGTTGATTCGTTCCTG 59 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326 2 1 2 83 14 71875782 71875803 TAGAGCTTTGTCCTAATCTGGA 59 71875847 71876779 CAAGCCAAGACCAACTGTC 59 NA Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 2 2 2 80 14 79865251 79865270 ACTATGTCTCTTATCGCCGC 60 79865311 79872066 TGATGATCTGTAGGTCCTTGG 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 1 3 3 80 4 22104869 22106909 GTAGCTGTGATCATGCTCC 58 22106953 22106971 CCGTCTCTAGGAGCTTCTC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 2 2 3 81 4 22111747 22111765 TACGAATTCAGGGAGTCGT 58 22111810 22115359 ACCACAAACCTGTCATCTC 57 NA Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 3 2 2 80 6 145776306 145776327 GACTCGGACAATGAAGATTTCG 60 145776366 145778975 CTCTGACTCTATGAGCTCTGG 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 3 2 3 80 17 21639928 21676090 ATAGGATTCCAGGAGTCCCT 59 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183 1 1 2 80 1 277091126 277093130 GAAGACGATGATCCATGCC 59 277093173 277093192 GCTGCAACTGAAGGTATTCC 59 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000042072 1 1 2 80 1 25769126 25769149 CTGATATCATCTCATCTGATGGTG 59 25767983 25769093 GAGGTTCTTCTATTTCTCCTTTGTC 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 3 3 3 80 12 41354905 41355016 GATCATCAAGGGAGGATCCA 59 41355059 41355077 GAGCTGAGGAACACTACGA 59 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 3 2 3 84 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360434 135365155 AAATTTGCTTCCTGATCCTCAG 59 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 1 1 1 60 1 215704025 215704045 CTGAAGATACAGTGCAATTCC 57 215705028 215705046 TAATTTCGAAGGTCCACCC 57 NA DesignNoJunction Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000037589 1 1 2 84 3 149339634 149339653 GTATAACCACGACAAGGCTC 59 149338246 149339587 AGGTGTAACACTGGGATCC 59 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203 3 1 2 99 X 156437507 156437610 CTGAGGAAGAGGCTCTTCG 60 156437671 156437691 AGTAGAGTGGACAAACAGTGG 60 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000065402 2 1 2 83 5 14287922 14297695 CCAGGACCTTAGAATCTTGAC 58 14287859 14287877 TCTCCAACATCATGAGCAG 57 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 3 2 6 81 12 41258882 41302465 TGGTACCAACTGTGTAAGGAG 60 41258821 41258839 CCCAGGCATAGATCGTGAG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 2 2 7 80 19 15094500 15095179 CACCTATCCACCTATGTGC 57 15095222 15095241 ACTTTCTCCTTTCTGTTGGT 57 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036642 2 1 4 80 8 124844301 124892615 CAGGAACGTATATGACCGCT 60 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596 2 1 2 82 10 36590000 36590018 GATCTGTCTCAGAGAAGCC 57 36590064 36590558 GTAAACAGGAATCCTGCCA 57 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 2 2 2 80 10 56856406 56858770 CTATCTTTAAGCTCCTAGTTCCG 58 56856348 56856366 CATCTGAGATGAGCTGGGT 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098 2 1 2 80 10 56852873 56852892 TCCCTGATGTTCAGAAGTCC 59 56852703 56852831 CTAGAGGTACCATGTCTGGC 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000038396 3 1 4 89 4 167483798 167483817 ACTATAGAGGTCGTCCTCCA 59 167483869 167483890 GATTCCTAGGTTCGAGCCT 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000055808 2 1 2 81 7 130334333 130334351 TGTCACTGGATGACTTCCC 59 130334393 130334498 GGAATGATAAGCAGTTCACTGG 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637 3 1 6 80 1 41928758 41928776 CCAGAGACCTTAAACAGCA 57 41928241 41928714 ATCTCATCCGTTGCTTGAC 58 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000067104 1 1 2 80 9 17742307 17742325 AGAACTGGAGACATGCTCG 60 17742367 17746330 GAAACTGTACGTACCAAACCG 60 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754 3 1 2 80 9 17742304 17742324 AGAAGAACTGGAGACATGCTC 60 17742366 17746330 GAAACTCCTTTGGGACCGA 60 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000033265 3 1 2 81 4 68818498 68819242 TCTGCTGTACTTCCCACAG 59 68818435 68818453 CTGCACATTAGTGGTTCCG 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000044081 2 1 2 124 11 24435423 24447174 ATGAAGGGTCTGGGTTGAC 59 24431765 24435337 ATCTTCTGCAAAGAACACCAG 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854 1 1 2 80 11 24441019 24447176 AAATGAAGTTGAGCCTGTCG 59 24435417 24435435 ATGTTTGTCAACCCAGACC 58 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854 3 1 2 82 11 24441019 24447176 AAATGAAGTTGAGCCTGTCG 59 24435415 24435434 TGATGTTTGTCAACCCAGAC 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635 1 1 2 80 2 140366102 140366121 TGAGACTTACATGATGCAGG 57 140324564 140366059 TGAACTGATGCTTCCACTG 58 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 1 2 2 80 8 54973649 54973669 GATGATGGGAGAAGCCTAGAC 60 54969926 54973609 TGCCTTATAGACCTGATCGAG 59 NA Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 3 1 1 84 10 55998349 55998367 GCAAGAATTCCTCAAGCCT 58 55998574 55998592 GATGTGGTGTCCTGGTACC 60 NA DesignNoJunction Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 1 2 2 80 1 166433670 166453782 GCACAAGATCAAGTGCAGG 60 166453825 166453844 CGGTATTCTATGTCGTGCAG 59 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 3 2 2 80 1 166433675 166453787 AGATCAAGTGCAGGATGGA 58 166453828 166453849 TCTTTCGGTATTCTATGTCGTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000088002 2 1 4 80 12 38447619 38450300 AGGAGAGTCAGATTGATTTCCT 59 38450340 38450359 TCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 2 2 3 80 3 48293650 48293671 ACATCTATTCCCACATGAGC 58 48293581 48293599 TGTGCTCTTGAGTAAGCTG 58 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000066711 2 1 2 80 1 204267363 204267383 GACTTCATCCATGCCTTTCAG 59 204261990 204267321 TTGGCTCTGTTGAATGCTC 59 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157 2 1 2 80 1 204267368 204267386 CAAGACTTCATCCATGCCT 58 204254845 204267325 GTCTGAGTACAACCTCTCCA 59 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090 3 1 2 101 13 84591832 84596598 GTTTCTACACCAGAGGGTG 58 84596662 84596681 TTGACGAACAGAAGAAAGCT 58 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836 1 1 2 80 5 151449080 151449098 CTCCTTGTGGGATCATGGG 60 151448840 151449038 CCATAACTACTGCCAGTACCA 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 1 1 2 80 16 81214626 81214644 GACTGGACCTGCTTAAGAC 58 81213884 81214584 TGGAAGTCACTTGTACATCTG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020 1 1 2 107 1 186009516 186067930 ACAGATCCAGCAGGTTCAG 59 186068001 186068019 AAGAGGAATCCCTGTTGGG 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 2 3 3 80 20 5110644 5111498 TGGAACCTGATGAAGAGCTG 60 5110583 5110602 TCAACCCATAGAGCATCTCG 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646 3 1 2 137 10 25906115 25906133 AAACAAGTGTTCCAAGCCG 59 25904318 25906014 CAGATGTACTCGGTTCCCA 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372 2 1 2 80 9 27402399 27402418 CTTCACTACTTCGATGGCAG 59 27402457 27403400 AGATTGTTTCTCCTCTACTCCAG 59 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000035009 1 1 2 80 16 7388203 7388221 TGCTAACATCACCAATGCT 57 7387902 7388163 GTCTGATAGGTCTTTCTGTACTC 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849 1 1 2 80 9 76638716 76638734 GTCATAGAGAAGCTCACGG 58 76621473 76638674 CAGTAGATGTCTCATTCCCAC 58 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 3 2 2 80 13 74796683 74796701 GCTCCAGTCCAAATGTCAG 59 74795828 74796641 TATGCAAATCACTGTCAGTGG 59 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 1 2 2 80 1 65663872 65663890 GACATCAAGCTCTTTGGGA 58 65661741 65663830 CTTCACAGCAATGTAATCCTG 57 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 2 2 2 82 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718826 143718845 TTCCGTTTGTTTGACTTTCC 57 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000050344 3 1 2 92 8 116841404 116841668 GTCTTGGAGAGCCAGACAG 60 116841330 116841348 AGGGTTGGAGAACTTAGCC 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000003705 2 1 2 104 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001087 88002681 GTCAATGTTCACCTCCTTCG 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 2 2 2 80 10 89935835 89936096 TCCAGCACAACAAGTTCCT 60 89935773 89935791 TAACGGTCTGAATGGCCTC 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 3 1 2 80 2 24224277 24224805 TTCAAGAAAGGTTTGCAGC 57 24224849 24224867 CTGTGGAACCTTCCTTCAG 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000072897 3 1 6 87 13 84491836 84491859 CTCTATTACTGTATCATCACCACC 58 84491905 84513655 CAAACACCCACTCCAACAC 59 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 1 1 2 85 6 7964958 7964977 CTGAAAGTGACAACAGCCTC 59 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 3 1 2 87 6 7964956 7964975 CTCTGAAAGTGACAACAGCC 59 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 1 2 2 80 10 62689403 62689557 TTCCCAGTCAAGATTGAAATCC 59 62689598 62689616 CTCATCGCAACCATTGAGG 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809 1 1 2 81 16 54471465 54471485 CATTTGAATATGTCGGATGGG 57 54469219 54471425 CCAAGAAGACTTGTTGATAAGG 57 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933 2 1 2 81 5 155966635 155968392 CAACAATGAAGGGTGATGGA 58 155968435 155968454 TCATCTAGTTGCTCAAGAGC 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 3 3 3 80 7 117360889 117360908 CAACTGGACCAGAGACTGAG 60 117360639 117360847 GATCTGAGACCTAGGGAAGC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 2 3 3 80 3 22884844 22887244 CTACTCTGAGAAGCTTCGG 57 22887287 22887306 TGCACATACTCAATGTCAGG 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000084806 2 1 2 80 1 69616216 69618779 ATGATCTGTACACAGGGCTG 60 69618822 69618840 TTCATCCAGGAGCTTCCAC 59 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 2 2 2 80 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288260 206288279 CTCAATACCACCCAGGTCTG 60 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000091084 2 1 3 124 12 37897741 37898574 GGACATCGGAGAAGTTGCT 60 37898662 37898680 AGTAGCTGGCATGGAAGAG 59 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 1 2 2 139 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418 3 1 2 86 1 43831919 43883704 GACTAGAGGGTTGGATGACTG 60 43831853 43831873 GAGATCTTTAGCAACTGCTCC 59 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 3 2 2 80 11 32690007 32697745 CACATCATTAAGATTGTGGCCA 59 32697784 32697804 GTTCAAGTACCTCCAAATGCC 60 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000051402 1 1 2 80 1 129769067 129769086 GCCTGCTACTCTATGTTTGC 59 129767272 129769025 CAACTGAGCATGTGACTCTG 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 2 3 3 80 3 134293428 134293448 TTATCTAGCCGAGATGTACGC 60 134292328 134293390 CAGACTCCTTTATAAAGCTCCAC 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000085060 1 1 2 80 8 21522791 21522812 CGTCTACGAAGCAAACATAGAG 59 21521981 21522751 TCGAAGGTCACTGAATCCTG 60 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 2 3 3 82 20 4532689 4532707 CTATCAGTGCCATCAAGGC 58 4532752 4533421 CTCTGGGTCCTTTAACTTCC 58 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 3 2 3 89 14 81948657 81950487 TCTGGAATATAGACAGGTTCAC 57 81951868 81951887 CATGTAGAAGAGATGGAGCC 58 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 3 1 2 80 9 98410216 98418585 TGACTGTAAGCCCAGATGAG 59 98418628 98418646 CCATGTTGTAGGCATCAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 2 2 2 80 4 66418797 66420755 TGACCCAGACACATTCACC 60 66420798 66420817 AGACACTCTGTTGACACCAG 60 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 3 2 2 81 11 31654116 31654135 AAGGTGACAGCTATGTTCTG 58 31654177 31656849 TTTGAATAGACAGGGATCCAC 58 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000084499 2 1 3 141 6 3767589 3782244 AAGCCAGACTTAGAGGCAG 59 3767064 3767082 CACATGCGCCAAGTAACTG 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853 2 1 3 84 12 44076251 44103308 ATCGCAGGGAATTCTTAACG 59 44103354 44103373 GGCTTGTATTCTTGCATCGT 59 NA Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 3 2 2 80 2 149926952 149935412 CAGTGACTCAACTGCTACAG 58 149935453 149935473 CCTGTAGTCCAGGATATAGCA 58 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000044363 3 1 2 108 10 57611214 57611232 AATGTGAACGAGCACAGTG 59 57611303 57613523 GTAGCTTATAAGCCAGGCAG 58 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 3 1 2 80 14 77079507 77081919 AGGACAAAGAACTGGTCCTG 60 77081959 77081980 GTTGTACCCATAGAGGAAGGAG 60 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 3 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244775 GAATCCGGTCTCATAGCCTC 60 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 2 2 2 80 10 89470618 89471500 TCTAACACCCTCATGCTTCC 60 89471540 89471561 CAAATTCTCATCCACGAATGCT 60 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 1 2 3 82 11 36749240 36749258 TGTGGCAGAGATGAAGGAC 59 36749304 36756783 CAATACTGTCCGGTGGAGG 60 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000079792 2 1 2 82 7 91865752 91867158 TTCATGTTGCTACAGCTGC 59 91867202 91867222 CAGATCAAAGCTACTGCTGAG 59 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545 1 1 2 84 1 67845676 67845695 GCTTATAGGGCTGAATTGGG 59 67832563 67845631 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 2 3 5 81 X 159169771 159169790 GTATTACTGCGTGGATTGCT 59 159169833 159171039 TTTACCAAACCCAGTGATGG 58 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000091626 2 1 2 83 19 19267516 19286057 AGACTCAACTTTATTCTGGCAG 59 19267454 19267472 ATGTCCGGGTCATCATAGC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000091626 3 1 2 86 19 19267516 19286060 CTTAGACTCAACTTTATTCTGGCAG 60 19267454 19267472 ATGTCCGGGTCATCATAGC 59 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401 1 1 2 80 7 59065906 59065924 TGCATCTGGTCAAGACCTC 59 59065966 59215417 ATATCCATTTGCAGTGTCACC 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000088589 1 1 3 93 3 43293237 43294087 TGTTGACACAGTATAGGATGGT 59 43294141 43294159 ATTATAGGCAGCGGAGCTG 60 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 3 2 3 80 9 100564153 100564171 GAATCCAGCAGATCACTCG 58 100562614 100564109 GCTCTACACTGTGAACTGG 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558 1 1 2 93 19 24416311 24416329 GGGCAGATTTGATTGAGCA 59 24416386 24418159 AGATGTTCAGCCACATTGC 59 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096 2 1 2 100 13 84084287 84084305 GTATTCGCCAATGCAGGAG 59 84083827 84084223 ATGAAGCAATCTGGGTTGC 59 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 3 1 1 83 1 280637489 280637507 CAGCCTTACGGAAACTCAG 58 280639485 280639503 GAGCCTTCTTCCTCTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000077908 1 1 4 81 1 201155668 201164782 CTCCACAGAGGACTTCTTCAG 60 201164825 201164843 TCTCCTTGCTTCTGTGGAG 59 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 3 3 3 122 2 148050380 148050398 ATAACCTGATGTGCGATGG 58 147957464 148050294 CATCTATTTCTGCTGGCGT 58 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 1 2 2 80 2 206591828 206591847 TCAGAAAGGATCGATTGACC 57 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 84 13 91155995 91156013 ATTCTGGAAGCCAATGGCT 60 91154513 91155158 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 84 13 91228840 91228858 ATTCTGGAAGCCAATGGCT 60 91154513 91227999 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985 2 2 3 80 14 5938303 5940714 AAATTGATCCCAGGCAACAG 59 5940754 5940775 CCGGTTAGGAAAGAATTGTCTG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000071516 1 1 2 80 X 159198650 159198759 ATGTACACCTGATGGTTCTG 57 159198589 159198609 TGACGTTTCTGTTCTTCTCTG 58 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066896 2 1 5 96 1 215673201 215676241 GGAACCAGAGGAGAAACCA 59 215679173 215679191 GTTCTGACGCTTCTTCTGG 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476 2 3 4 85 3 152615421 152615748 GATCAAGACCAGGCTCTGG 60 152615792 152615815 CTATAGACAACAGCTTTGGTTACC 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000000821 3 1 4 147 12 48164878 48164898 TGTCAGCCATTGACATGTG 59 48162032 48164214 TCACATAAACCTCCAGGGAC 59 NA Rattus norvegicus 81 LOC102551064 ENSRNOG00000037159 ENSRNOT00000056084 3 1 1 60 2 205714703 205714724 ATGAATACGAAGAGGATGAGGA 59 205714742 205714763 CGATCTTCATCGTTATCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc162 ENSRNOG00000037668 ENSRNOT00000000340 1 1 1 80 20 46280237 46283863 CCTGAAGCAGATGAGAAACC 59 46280176 46280194 TTCAGTAGCTCCTGCACTC 59 NA Rattus norvegicus 81 Cela3b ENSRNOG00000021619 ENSRNOT00000036788 3 1 1 80 5 155764811 155764829 TGTAACACCCTGAAGAAGC 57 155763939 155764767 GTTGTTGGCTATGGTCTCC 58 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 2 1 1 80 7 18463329 18463507 ACTATCAGCTTCTGGAAGGG 59 18463545 18463568 TGAGGTAGTAATAGTAGTCTGGTG 59 NA Rattus norvegicus 81 Olr4 ENSRNOG00000047512 ENSRNOT00000072272 2 1 1 84 1 70454617 70454636 TAACTTGCATGACGCAACTC 59 70465281 70465299 TAGCGGTCATAAGCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 C2 ENSRNOG00000051235 ENSRNOT00000060607 2 1 1 80 20 4552284 4553461 TCTGTCTGCTACAAAGATCAC 58 4552224 4552243 ATTCATCATGAGGTAGACGC 58 NA Rattus norvegicus 81 Smtnl2 ENSRNOG00000015157 ENSRNOT00000020379 1 1 1 80 10 58961548 58961798 GCTATCAGCATGTGGACCT 60 58961486 58961504 AGAATGAGTGCACTAGGGC 60 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000079684 2 1 5 81 9 28664245 28732702 GTGTCCTGGTTATGTGGGT 59 28664182 28664200 CTTCCAAAGAACCACGCTC 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000086967 2 1 5 82 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664241 28664264 GCATACCCACATAACTTTGGA 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 2 2 5 80 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664247 28730319 CCACATAACCACTTTGTCCTC 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 3 2 6 80 10 89217315 89217336 GCTAATAGCTTCACTCTGATCG 59 89217151 89217274 TCCAGTGACCTTGAGTCTC 58 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 2 3 3 82 12 46801167 46801916 CATCTTGGATAAAGTGGTGACAG 60 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016596 1 1 2 80 2 34257859 34257879 GAAATATTAGCCCATGGACCT 58 34257917 34258833 CTCCAGAACTGAAAGATAGTGAG 59 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631 3 1 2 86 1 211559594 211559613 AGAGGATGGATGACACTCAC 59 211559662 211560197 TGTCAGCAGAGCTTCTCTG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 2 2 3 149 14 81014708 81037662 TTGATGATCTCGAGTCTGCA 59 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 1 2 2 81 10 89403466 89403486 GGAGGAAAGTGGATAGTTAGC 58 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246 2 1 2 81 3 48809685 48810131 TGTCAAAGTTTCACGTTCCTG 59 48801401 48801420 TGAATCTGATGTGGATCCCA 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000050330 2 1 2 84 2 247333492 247349538 CATGCAGGGATTCATTTACCC 60 247351501 247351519 GTCATCTGAGTCAGGAGCA 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000081780 2 1 3 81 12 43576724 43576798 CTTTCAGTGGCTGAACTCAC 59 43576662 43576683 CTGAAATTATGGGTCCACAGTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000081780 3 1 3 82 12 43576726 43576799 GCTTTCAGTGGCTGAACTC 59 43576662 43576683 CTGAAATTATGGGTCCACAGTC 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687 1 1 2 80 2 31764122 31770170 AGCTTCTTGATTGTGATGCC 59 31764061 31764081 GATAGCGTTTGAAAGCATCTG 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641 2 1 5 80 13 34489087 34489105 CTCCTCATCCTCAGGTTCC 59 34489149 34491429 GCAGTACCGTCTAATGACG 58 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000011978 1 1 3 150 3 159902589 159941151 GAGTCCTTATGACACATCCC 58 159941264 159941282 CCTGAAGAATCCCTTGCAG 58 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 2 2 2 80 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628545 7629168 AAGGGTAATTCCTATGCTCTGG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 3 1 1 62 2 36011093 36011111 CTTCATTCGATGCTCCTGG 58 36011784 36011802 AATCAGTCCATGTGTAGGC 57 NA DesignNoJunction Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524,ENSRNOT00000089624 2 5 5 80 8 99640721 99640740 GAAGTCATGACTCTGGAGAG 57 99640782 99640901 AGCCTGGATTTCTATCTCCT 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618 1 1 2 80 8 109288153 109302685 CTTCCAAAGAGGATTTGTTGGT 59 109302724 109302744 TAACATTAGACAGGCACTGCT 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957 2 1 2 85 10 89237701 89237719 AATAGCCACGATGGACTGG 60 89239716 89240105 AACACCTTGGTTCCTTGGA 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000087432 1 1 3 80 1 219833666 219836234 GGTACAAGGTACATAGAGGAGG 59 219836275 219836293 ACAGGTGAGATCATGCCAG 60 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025689 2 1 3 99 2 210725770 210725788 AGATACACCATGGGAGACG 59 210724970 210725276 CAATTAAGTAGGGCAGATTGGG 59 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477 2 1 2 81 16 59077972 59077990 GACCACATCAGGGATTCCA 59 59078035 59219555 CTTCAATTTCTGCCAGCCT 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161 1 1 3 157 8 120387454 120387472 CGATATACAACCCTCCCGG 59 120386557 120387333 CTGGACAGACTGAGTGACC 59 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000091791 2 1 2 81 8 132135192 132135488 CAGCAGAACAGTGCTTGTC 60 132135532 132135551 TTGGTACTCAATCGTGTGGT 59 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864 3 1 2 80 9 52695922 52695944 CTAAGGAGCTTACCTTTGTTCTG 59 52695980 52697361 CAACATATTCTCCCTCATTTCCG 60 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 2 1 1 79 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482771 35482792 ATTAGAGCATGAGAGCTTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 3 2 2 80 14 89199536 89200240 ACCCTCTACTACCTTCTGAC 58 89199475 89199494 GTTTCCTTATGTCGATGTGC 57 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000052403 3 1 2 82 2 210748641 210748659 AGAACCAGGTCATGGACAC 59 210747659 210748596 CAAGAACTCTGGCTTTCCAC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 1 2 4 81 8 39185261 39185279 CAATGCCTGAAAGAGACCT 57 39184086 39185219 CCATTGTTGATACAGTAACCTG 57 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184 3 1 2 93 3 161426096 161438677 GAAGACGTCAAAGGTGACG 59 161438732 161438752 TGTTCCTGCCATCATACTCTC 60 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 3 3 3 80 9 50705166 50705186 GACTCAGCTAATGAATGGGAC 59 50705226 50706520 GCTTTCAGTCCTGAAAGTACC 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 1 3 3 82 2 216347596 216347615 AAATTTGCTCAAGGTCTGGA 58 216346779 216347551 CACATAAATCCGGACACCA 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 3 6 8 106 20 4363553 4363720 GAATGGAAACTGAACACAGGA 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 3 5 8 80 20 4389074 4389093 CATGGATGAGCACAATGTGG 60 4388925 4389033 TTCAAATAGTCCGTGTCTCCA 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 3 1 1 116 2 42727741 42727760 ATATGCTGAGACTGTGGCTC 60 42727867 42727887 CCTATGATAGTGATGCAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 3 2 2 81 2 218967497 218967517 TTAATGGTAGACGATGACGTG 58 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347 1 1 2 96 16 71653844 71657641 GTTTAATAACGAGTGGCTGCA 59 71661143 71661161 ATCTGTGAGATCACGGCTC 59 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000088462 1 1 2 80 16 71653839 71656298 GTCGCGTTTAATAACGACCT 59 71657639 71657660 GTTTCGTATTTCTTCACCTTGC 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 1 1 2 80 16 71281037 71282792 CAATGTCTCAGATGCACTGC 60 71280976 71280997 TTGTCTGTCTCTTTCTCCTCTG 60 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 2 1 2 80 16 71281037 71282791 AATGTCTCAGATGCACTGC 58 71280975 71280995 GTTGTCTGTCTCTTTCTCCTC 58 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 1 2 2 80 8 62528622 62529284 CTCTGAAGAGTTACATGCTCC 58 62528562 62528581 GGTCGAACTCTAACATCCTC 58 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000012545 2 1 2 82 8 122137095 122139301 ATGCCTTGCTCTTAGGAGAC 60 122140414 122140432 GTCATCTGAGTGCATTCCG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000048985 1 1 8 150 20 4483903 4483921 TACCAGCTAGCAGATGGAG 58 4484149 4484346 AACAGGGAGTTATCCTGGG 58 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 2 2 2 80 16 73955726 73956394 TCCGAAGTGACCAATTTGTG 59 73955665 73955683 GTCGAAGATTCAGCTGGAG 58 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 1 2 2 80 8 62407327 62407347 GAGTTTGGTGGACTATCTTCG 59 62407167 62407289 CAGACGTCTAGTGAGAATTTGAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000015879 1 1 2 80 16 67522515 67522533 GAGTGGACGTCATTGACTC 58 67522575 67527005 GAGAATTTCCTTGACGAACTG 57 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000012915 3 1 2 91 5 61713163 61715430 GGTCTCAGAATGTTCATATTGTGG 60 61713095 61713114 CAGAACAGGTCAACACAAGC 60 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566 3 1 2 88 5 61704746 61704765 GATAAGAGCAGGAGTCTGTG 58 61704273 61704696 AGTGGGTCTGACAAATACAC 58 NA Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 3 2 2 95 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697024 74697042 AGGTAGTGGAAACCCACTG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000084375 2 1 4 128 3 56873188 56873206 AGACACCCTAAAGTACGGG 58 56878171 56883653 TCTGATGGCATATTGGTATTGG 58 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 2 2 2 99 16 75146134 75147255 CTTACCATGAGCCTGGACC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891 3 1 2 92 16 71019131 71020120 GGAACCTAAATGGTGGAGC 58 71021819 71021837 CTCCATCTTGCTGCTTACG 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634 2 1 2 82 5 162247543 162247564 CTCAACTTCCCACATTCTACTG 59 162247607 162248288 CTTCTTCAGGCAAAGGCTG 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634 3 1 2 83 5 162165963 162246226 CTGATGAGGATGACTCTTCAG 58 162246271 162246289 GTAGCCTCTGAATTGCCAG 58 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516 1 1 2 80 3 153582304 153582324 GACTATGAGTCACGGACAGAG 60 153582364 153582594 CACCTTCCTCGTGTTATTGAC 59 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 3 1 1 268 3 171302446 171302464 TGAGCCACTACAAGCTGTC 60 171296061 171296079 ATCAGACAGCGAGATGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 3 1 1 70 16 75028948 75028966 TTCCTTAATTGTTGCCGGG 59 75027250 75027268 ACCTTCTGTACAGTGTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823 3 1 2 98 3 170994210 170996205 TGCCCTCTAGTTCTGAGGT 60 170996267 170996285 TGTCTATTGTGAAGGCGGG 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280 2 1 2 124 3 80855387 80873546 GGAAAGCCATCACCAAGTC 59 80855002 80855299 ATACGCTGCTGACTCACTC 60 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 2 1 1 85 16 82439363 82439383 AGCTATTAATAACTGCCCTCC 57 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 1 2 2 80 3 80079252 80079271 GCGACTTCTCTTCTTCAAGG 59 80079314 80079435 AGCTCATGGAACTTGTCAC 58 NA Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060522 ENSRNOT00000083901 1 1 1 60 5 5737100 5737118 AGTTCTGGGCTGTAGTACG 59 5737058 5737079 CATATTGATGCCGAACTTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054535 ENSRNOT00000081009 1 1 1 60 5 22905703 22905723 GGAAGACACTGTGATCATGAG 59 22905663 22905683 TTGGTGTGCAATAGGTAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057518 ENSRNOT00000080644 3 1 1 60 5 122109301 122109319 GATCTCAGGACGAACGAGG 60 122109343 122109361 GGGAATCACAAGGGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpkow ENSRNOG00000022939 ENSRNOT00000039000 1 1 1 80 X 15649835 15649853 AAACAAGCACCGTGTTGAC 60 15649670 15649793 CCAGAGACTTCTTGGATTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052881 ENSRNOT00000080226 3 1 1 68 2 215196618 215196637 TTACTGATATGGCTGCTGTG 58 215196569 215196587 CACAAGTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059464 ENSRNOT00000080601 1 1 1 60 2 161559622 161559640 TGAAGAACGCATCTAGCTG 58 161559662 161559682 GTGTCCATGATCAATCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 2 1 1 77 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35953410 35955777 TAGAGCATGAGAGCTTAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057918 ENSRNOT00000087318 2 1 1 60 2 79604305 79604324 CATGTGCATCAGTAGGTAGC 59 79604264 79604284 GTCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056607 ENSRNOT00000087060 2 1 1 60 2 263540965 263540983 TGTGCATCCTGTCTGTCAG 60 263541004 263541025 AATACTGAGCATTGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053246 ENSRNOT00000089032 3 1 1 60 11 26461984 26462002 AGGCTATGTCTACCCTCAG 58 26462023 26462044 ATGTTAGGCTAGTAGTCATTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 1 1 1 65 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762812 13762832 ACCTTACTAGACAGGTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058634 ENSRNOT00000087436 1 1 1 60 8 61160885 61160903 ACAATTCAGTGAGAGCAGG 58 61160843 61160864 TGGGATGATTTACAGATTCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060852 ENSRNOT00000091123 3 1 1 60 11 70879923 70879942 TGACAGAGTTTGGAACAGAC 58 70879965 70879983 CAGCTTAGAGGAAAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109100.2 ENSRNOG00000057827 ENSRNOT00000090916 1 1 1 80 15 33342050 33342070 CTGGTACCATTGTCTACTGTG 58 33341814 33342008 CATGCAGTGTAGCCATGAC 59 Novel Rattus norvegicus 81 ACEA_U3 ENSRNOG00000056601 ENSRNOT00000089049 1 1 1 60 2 146467031 146467052 TTTGCCATTGATGATCGTTCTC 60 146467073 146467091 ACTCAGACTGTGTTCCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054664 ENSRNOT00000089768 1 1 1 60 8 95093802 95093822 AAAGAGGCCATATCTACCCTC 59 95093762 95093786 GGCTACTAATCATTAAGATGCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051997 ENSRNOT00000087319 3 1 1 61 8 131897371 131897392 CATTACAGAGAAGATTAGCACG 57 131897331 131897349 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056349 ENSRNOT00000089951 2 1 1 60 2 198772349 198772369 CTAGGAGTTGGAATAGGAGCT 59 198772309 198772327 GTACTGCAGTACCAGGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056349 ENSRNOT00000089951 3 1 1 60 2 198772340 198772359 GAATAGGAGCTTTCTCCGTC 58 198772299 198772317 GTTCCTGGAGGTACTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054199 ENSRNOT00000081328 3 1 1 61 2 84226315 84226333 GCTGATCCCTGTGATTTCC 58 84226272 84226292 CCCTACTGCCACAAATTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000053795 ENSRNOT00000083849 2 1 1 62 2 260115222 260115240 GGTCAATGATGTGTTGGCA 59 260115178 260115199 TAGAGCTCAAATGTTAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046763.1 ENSRNOG00000059973 ENSRNOT00000089152 1 1 1 80 5 5690263 5691748 TCAGAGCAGGAGTTCTTACC 59 5690202 5690220 TGAGCATGACCTCAGTGAC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059045 ENSRNOT00000078184 3 1 1 60 8 104069841 104069859 TTCATCTCCAACTGCATGC 59 104069799 104069817 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 3 1 1 70 8 23323445 23323464 AGCCGATTAAGTCCCTTTCC 60 23323394 23323412 ATTACCAAGGAGGCTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051395 ENSRNOT00000079119 2 1 1 60 16 25809420 25809442 TATAGAGATTAGCATGGTCCCTG 59 25809462 25809480 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033910.1 ENSRNOG00000052102 ENSRNOT00000080403 3 1 1 83 11 43932700 43932725 GTCTGTTTCACTATTCGGATCTC 59 43932766 43932786 GCAGCCGGTATATCTTTATCC 59 Novel Rattus norvegicus 81 SNORD16 ENSRNOG00000054329 ENSRNOT00000083337 1 1 1 60 8 69123722 69123741 TCTTACTCTGTTCACAGCGA 59 69123764 69123782 TCGTCAACCTTCTGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054329 ENSRNOT00000083337 2 1 1 60 8 69123723 69123741 CTTACTCTGTTCACAGCGA 57 69123765 69123783 TTCGTCAACCTTCTGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059821 ENSRNOT00000081575 1 1 1 60 8 22717963 22717985 GGAATAAAGAGGCTTAGTATGGC 59 22717925 22717945 CGGAATATTCGCAGATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058394 ENSRNOT00000086778 2 1 1 60 16 52549556 52549575 ACAAACACTGATGTTGGACG 59 52549515 52549534 GTACCATCCTTGTGCATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073381.1 ENSRNOG00000027052 ENSRNOT00000030115 3 1 1 60 8 33345308 33345327 TGAAACAACTGGAGGATCTG 58 33345267 33345285 CCTGTCACTTTGGAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.2 ENSRNOG00000056737 ENSRNOT00000080388 3 1 1 70 8 116880149 116880167 AATCTCTGGAGTCAGAGGC 59 116880097 116880115 TAACCTGGTCCTGACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056684 ENSRNOT00000092171 1 1 1 60 16 46532722 46532742 TTACTTCAGAAGCATGTAGCC 58 46532763 46532782 GTAGGGACCTTGCTAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000058810 ENSRNOT00000086906 2 1 1 61 16 71275033 71275056 GGCTGAATACTGTGTTCTTTAGTC 60 71275074 71275094 ACTTTACTCTTGCATGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054744 ENSRNOT00000087277 3 1 1 60 16 71162951 71162969 AAGATTTCAGGGCCATTGC 59 71162909 71162928 TGGACCTACAGTTCTAGACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041834 ENSRNOT00000063587 1 1 1 64 6 44933698 44933719 TCAAATGGTCTTGTCTGATCTC 58 44933744 44933762 TTTCCTACCCAAACACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061649 ENSRNOT00000086337 1 1 1 80 1 121563651 121563671 GGGTCTATGTCGATGATAGCA 59 121563710 121563731 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 1 1 1 60 6 105867461 105867481 GCCATACCATTCTAACAGCTC 59 105867502 105867521 GTACTGACAAGGTCTGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 3 1 1 60 6 105867488 105867506 TTGGAAGCTAAGCAGGGTC 60 105867530 105867548 ATCATTGCCAGGTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 2 1 1 60 4 126592901 126592922 AAATACAGTTAGAGGCCTTTGC 59 126592942 126592961 ACACCATCAGACTTCAGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033745.2 ENSRNOG00000057895 ENSRNOT00000085972 1 1 1 107 11 38776461 38776479 TTAGCACAGATGAAGCAGC 58 38776555 38776573 CTTTAACCTTTCCTGCGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 2 1 1 64 2 192520891 192520909 ATACCAGCAGAAATGCCCT 59 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056437 ENSRNOT00000088652 2 1 1 61 6 133832361 133832385 GATGATAGTTACCAAGGTATGAGAG 59 133832404 133832422 GGACTTCTGAGCTTCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059882 ENSRNOT00000090941 3 1 1 60 9 55114567 55114589 GATACAGAGAAGATTAGCATGGC 59 55114529 55114547 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042316.1 ENSRNOG00000056242 ENSRNOT00000085142 3 1 1 60 X 152584670 152584689 TATTTGTCTGAGCATGCACC 59 152584629 152584647 GATTCCTGCTCAGGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037347.1 ENSRNOG00000046532 ENSRNOT00000073358 2 1 1 60 X 19215764 19215783 TTTGTGTTGCCTAGCTTGTC 59 19215723 19215747 CCTAGTATGTGACTACATACTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055947 ENSRNOT00000084094 2 1 1 106 2 205485330 205485348 GGTTGATTCGGCTGATCTG 59 205485242 205485260 GAAGGTCGTCCTCTTCGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 1 1 1 60 3 58127169 58127187 TCACTTCAGCTGCAAACAG 59 58127205 58127229 CTTGTACAAAGGTCATACTAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 2 1 1 61 3 58127169 58127187 TCACTTCAGCTGCAAACAG 59 58127207 58127230 CCTTGTACAAAGGTCATACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.1 ENSRNOG00000039470 ENSRNOT00000060486 2 1 1 104 18 30568337 30568355 TTTCGTGCTCTACCCACTG 60 30568466 30568484 CTTGAGCAGCTGGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008099.1 ENSRNOG00000048490 ENSRNOT00000071308 2 1 1 61 2 42830348 42830366 CCAGAGGGATCCATGAGAC 59 42830390 42830409 CTTGCGAATATCCACATCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059722 ENSRNOT00000089002 1 1 1 60 2 409819 409840 TGATCATGGACACTATGAACAC 58 409780 409798 AGATAGGTGTAGTCCAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059854 ENSRNOT00000086430 3 1 1 60 2 188074640 188074659 GCCTTAAACCATTGCCTAGC 60 188074682 188074700 AACTGCACAACCATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056635 ENSRNOT00000079950 1 1 1 60 X 14540542 14540560 TTGTGCTGATTCCTGACTC 58 14540584 14540602 AATGCAGTTGACTTTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070278.1 ENSRNOG00000051681 ENSRNOT00000077762 3 1 1 68 8 63291867 63291885 AAGGAGGAAAGAAAGGCAC 58 63291683 63291701 GTGCCATGTGTAAAGGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052438 ENSRNOT00000089877 3 1 1 60 6 80946321 80946339 CCTAAAGGCATTGCAGGTG 59 80946279 80946297 TCCTTTCTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053892 ENSRNOT00000086401 2 1 1 70 2 166764118 166764136 TCACATGTGCGTCAGTAGG 60 166764066 166764085 TATTCAGATGCTCACAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053416 ENSRNOT00000083494 1 1 1 60 2 53555832 53555852 TATACAAGTAGCTGTGCTCCC 59 53555792 53555811 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.3 ENSRNOG00000053248 ENSRNOT00000087454 3 1 1 106 18 25360550 25360570 GACTGTATTACTCCAGCACTC 58 25360457 25360478 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057148 ENSRNOT00000081521 3 1 1 60 9 85010669 85010689 AAAGAGGATGAAGAGGACGAC 60 85010710 85010729 TAACCTCAACTGAAGACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 2 1 1 69 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711756 86711774 TAAACACCTTCCAGCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC098750.3 ENSRNOG00000056073 ENSRNOT00000089103 1 1 1 104 2 188667442 188667463 AGAGATCATCTAAAGCCATCG 58 188667532 188667550 TTGTGACGTAAGGATCCCA 58 Novel Rattus norvegicus 81 AABR07026912.1 ENSRNOG00000054922 ENSRNOT00000089748 3 1 1 60 17 4697833 4697854 TCTATACACATATGACCATCGG 57 4697792 4697815 TGGGAAATTGTAGAGAAGTTCC 58 Novel DesignRelaxed Rattus norvegicus 81 ACEA_U3 ENSRNOG00000058438 ENSRNOT00000080772 2 1 1 60 10 74757917 74757940 CGTTACTAGAGAAGTTTCTCTGAC 59 74757959 74757977 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 1 1 1 80 1 168073013 168073031 CACTCGTGTCAACAGTCTC 58 168073072 168073095 ACATAGGAGAAGAGGATAAGGG 58 Novel Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 2 1 1 209 9 110721471 110721489 TAGTGTGGAGGTCAGAGGA 59 110731673 110731691 TCTTGTTGCCTTTGTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059305 ENSRNOT00000087271 2 1 1 60 7 80863444 80863464 GTTTGTCAGTAGGTGACAGAG 58 80863483 80863504 TATAGGTCAGAACACTGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120750.1 ENSRNOG00000050522 ENSRNOT00000075001 2 1 1 60 7 123815628 123815646 ACCTGTTCTTGGATCATGG 57 123815586 123815605 GCACAGAGATGTTAAGTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060944.1 ENSRNOG00000057963 ENSRNOT00000087546 1 1 1 90 4 101531419 101531825 GATCCAGGAAACCAGTGGT 59 101531879 101531897 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07037923.2 ENSRNOG00000049961 ENSRNOT00000072460 1 1 1 80 X 35366829 35366851 AGATTTCACCTCACATGCG 58 35366894 35366913 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055351 ENSRNOT00000089531 1 1 1 60 1 277058226 277058244 GTCAGTAGGTGGCAAAGAG 58 277058184 277058202 TCAGATGGTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056004 ENSRNOT00000088560 3 1 1 60 16 47954616 47954637 GTATGAATGCTATCCACAACGG 60 47954577 47954596 GCAGGCTTCATACACTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045363 ENSRNOT00000070630 1 1 1 60 16 59859190 59859208 GAATGCTCCTGATCTCGTC 58 59859231 59859250 GATGCCCAGCATAATTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045363 ENSRNOT00000070630 3 1 1 62 16 59859188 59859207 TTGAATGCTCCTGATCTCGT 59 59859231 59859250 GATGCCCAGCATAATTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055207 ENSRNOT00000085379 1 1 1 60 X 139701078 139701096 GAGAAGATTAGCATGGCCC 58 139701120 139701138 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054927 ENSRNOT00000081233 1 1 1 60 10 28417698 28417719 AAATACACTGACTATCAGGCTC 58 28417740 28417758 AATGGGAACATCTCCACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055256 ENSRNOT00000082249 3 1 1 60 X 76845010 76845028 TATCCTCTATCCGAGGCCA 59 76845051 76845070 CTCCTGTCCCATCTCTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051985 ENSRNOT00000080273 2 1 1 72 6 67902182 67902200 TTTGAGGCACGATTGTTGC 60 67902234 67902254 TAGAGAATGATTGTGGTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054106 ENSRNOT00000078342 2 1 1 60 X 145875893 145875913 GATGAAGAACATGGCTAGCTG 59 145875853 145875873 GTCCATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052316 ENSRNOT00000081003 1 1 1 60 17 10713443 10713462 GATTCGGTTGATATGGCTGG 59 10713484 10713503 GGGAGGAACAAACATGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053049 ENSRNOT00000087209 2 1 1 60 2 67847672 67847691 CACACTGCTCCATGTATGTC 59 67847711 67847732 GAAAGTTAGTCCTCTTACACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056408 ENSRNOT00000084456 3 1 1 60 6 46921265 46921284 TCACATGTGCTTCAGTAGGT 59 46921306 46921325 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.4 ENSRNOG00000057799 ENSRNOT00000077370 2 1 1 73 17 43777486 43777504 TTGTTGAGCTCCTCATCGT 59 43777541 43777559 AGAGACAACAAGAAGACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067743.1 ENSRNOG00000056312 ENSRNOT00000081493 1 1 1 62 9 60496705 60496723 AACATGTCCTTGCCCTCTC 60 60496749 60496767 CATGTCAGTGCCATCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD105 ENSRNOG00000060532 ENSRNOT00000077761 2 1 1 60 8 21906942 21906961 TCCTGTCTCATGATGATCCC 59 21906984 21907002 CGTTTACTTTGAAGCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057113 ENSRNOT00000084394 1 1 1 60 10 88896519 88896537 GAGAAGATTAGCATGGCCC 58 88896561 88896579 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096051.1 ENSRNOG00000049764 ENSRNOT00000071702 1 1 1 60 10 15615954 15615974 TAGAGCCCATAGTTTCAAGAG 57 15615914 15615935 GAATAGCCAATAAACTGCAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052638 ENSRNOT00000079865 3 1 1 60 9 35610509 35610528 ATACAAGTAGTTGTGCTCCC 57 35610468 35610487 CCTACAATGGACCTTGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054602 ENSRNOT00000080479 1 1 1 60 16 37214213 37214231 CTGCTGTATCACATGTGCG 59 37214254 37214273 GTGTGCATAGACATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012274.1 ENSRNOG00000059604 ENSRNOT00000090155 3 1 1 62 2 191986143 191986161 GTGGGTTGTGGAAAGACCT 60 191986099 191986117 ACCACCGCTATAGTAACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 1 1 1 60 X 57058452 57058470 CCAAACCAGAACTGGAGAC 58 57058242 57058430 TTGTAACTTCCCACTACACTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA42 ENSRNOG00000058244 ENSRNOT00000087463 3 1 1 64 10 37601001 37601021 ATGGGTTTGGATTTATGGCAG 59 37600957 37600975 TTGATCTAGCACGGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058858 ENSRNOT00000086322 2 1 1 60 3 40696291 40696313 CGATACAGAGAAGATTAGCATGG 59 40696253 40696271 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016966.1 ENSRNOG00000051721 ENSRNOT00000087303 2 1 1 60 15 5619899 5619919 CATCACTGTGATCTTGATGGC 60 5619940 5619959 AGGCCTCAGTAGAAAGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039541.1 ENSRNOG00000002321 ENSRNOT00000003156 2 1 1 60 X 79489643 79489665 GGAAACCCATATCATCCATACCT 60 79489685 79489703 GGCCACATTGAGAATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036974.1 ENSRNOG00000030819 ENSRNOT00000047059 3 1 1 60 X 8646162 8646180 GCAAGAGAAGACTTTGCCA 58 8646202 8646222 CTCTCAGATTGCTTTCATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305178 ENSRNOG00000007532 ENSRNOT00000076713 3 1 1 81 3 9820039 9820057 ATCCTTTCCAAATGGCGAC 59 9818934 9819995 TCCTCTTCACTGACCTTGTC 59 Novel Rattus norvegicus 81 AABR07019341.1 ENSRNOG00000058766 ENSRNOT00000085607 3 1 1 71 15 100348707 100348726 TAGCTAGAGGCTGACAACTG 59 100348655 100348673 GTATTTGCACATGGGTGCC 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 5S_rRNA ENSRNOG00000044660 ENSRNOT00000069927 3 1 1 60 6 116965721 116965739 CATGCCTGATCTCAGAAGC 58 116965679 116965700 GGAATTCTCCCATCTAAGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 2 1 1 60 15 24285206 24285226 TTGGATTCCAGATATGCTGAC 58 24285248 24285266 ATTATGCAGTCCGGTTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038795.1 ENSRNOG00000055102 ENSRNOT00000088653 3 1 1 80 X 60864191 60864278 CTCTCCTGAGTTAGGTGCT 58 60864129 60864148 AAATGTGCACTTCTGTCCTC 59 Novel Rattus norvegicus 81 AABR07072237.1 ENSRNOG00000054404 ENSRNOT00000090804 3 1 1 80 11 60254050 60256227 CTGTGAGCAAGAATCAGAGTC 59 60256268 60256287 ATGGTAACGTTTCTTCCCAG 58 Novel Rattus norvegicus 81 AABR07007092.1 ENSRNOG00000034090 ENSRNOT00000048196 3 1 1 61 1 280753901 280753920 CTGGCCAAATCTATTCACCA 58 280753859 280753877 TTGTGGACCCTGATGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051665.1 ENSRNOG00000053446 ENSRNOT00000088394 3 1 1 60 3 18970801 18970819 CATGGAGGCTGAAGATGCT 60 18970843 18970861 TGTGGGTGGGTTACTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056206 ENSRNOT00000079530 1 1 1 75 4 87048938 87048956 ATTGCACCCACTTCAACAC 59 87048881 87048899 GCATGTCTTCTTTGCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.2 ENSRNOG00000050786 ENSRNOT00000073403 1 1 1 115 10 34317042 34317061 TCCAGCTTGAGATAAGTGGT 59 34317137 34317158 ACAACAGAAGTTCAAGCAGTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000054977 ENSRNOT00000084647 3 1 1 60 9 18736070 18736088 TGAACATGCCTGGTTTCAC 59 18736109 18736130 AAGTTCTATCTAGACCCAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051705 ENSRNOT00000084453 3 1 1 60 9 3985935 3985954 TTCTGAAATTGGACCGACAC 59 3985975 3985995 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043247.1 ENSRNOG00000053972 ENSRNOT00000085796 3 1 1 81 19 26761156 26763068 AGCTCAACAACGTAATGAAGTC 59 26763107 26763128 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052588 ENSRNOT00000078490 2 1 1 60 10 7630999 7631021 GGAACGATACAGAGAAGATTAGC 59 7630961 7630979 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057041 ENSRNOT00000081931 2 1 1 60 1 136805722 136805740 GAACCCAACATGGTAGCAC 59 136805763 136805782 ATTTGTCTGCCTCTTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056274 ENSRNOT00000081458 3 1 1 60 4 132947855 132947874 TGCTATGTCATGTATGCGTC 58 132947814 132947833 CCTGAGCATAAACCTAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.1 ENSRNOG00000027511 ENSRNOT00000000260 1 1 1 60 10 76313006 76313024 ATGTTGTGATCGCCATGTC 59 76312964 76312982 GCTTCTTCTACCACCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061134 ENSRNOT00000077411 3 1 1 60 4 132337529 132337550 AGATCTTCCACAAATAGAGGAG 57 132337490 132337511 GAGCACAGCTACTAGTATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 3 1 2 73 2 52609172 52609190 AATGGGACTCAGAGGAAGC 59 52591316 52609135 TTCCTCTGAGTCCCATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056979 ENSRNOT00000079569 2 1 1 60 10 55500052 55500075 CATACTAACATTGGAAGGTCACAG 60 55500094 55500112 TTGTGTCATCCTTGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000055242 ENSRNOT00000078549 2 1 1 60 17 86914837 86914855 GCTTTGGAAGAAGGAGGGA 59 86914877 86914897 AGCAAACTTGGAATGGAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052314 ENSRNOT00000079150 2 1 1 76 2 179615879 179615897 CATTCCTACAGTGCTTGCC 59 179615935 179615955 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.1 ENSRNOG00000030827 ENSRNOT00000047083 3 1 1 104 3 75794079 75794097 TTCAGACCAAGTTCTGCCT 59 75794159 75794185 CACATCCTTATTGTAAATCAGAGGG 60 Novel Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 3 1 1 60 X 7050824 7050843 AACCTTGTTGCTGAAATCCT 58 7050864 7050884 CTGCCTCATCCTTAACTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051584 ENSRNOT00000089039 2 1 1 61 17 65512801 65512820 TGAGTTGGGAGGTGAATTCC 60 65512759 65512777 CTCTCCTGTCCAACCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056123 ENSRNOT00000086102 2 1 1 60 2 20742191 20742210 TATATGTGGGCCAGTAGGTG 59 20742232 20742251 TCACAGGTCTGAAGTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054291 ENSRNOT00000082480 1 1 1 60 12 43997013 43997033 GCGATACAGAAGAGATTAGCA 58 43996973 43996992 AACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000057339 ENSRNOT00000077668 1 1 1 64 12 38496047 38496065 GATCCCTTCTCAGCCAGAG 59 38496001 38496019 ATGACGATGATCCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 2 1 1 60 X 46934424 46934444 AATGTGATGACTCATCAGAGC 58 46934383 46934401 GCAGGATACACAGTACTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AC115307.1 ENSRNOG00000059655 ENSRNOT00000079980 1 1 1 80 X 1855164 1855185 GATAATCATCAGGACCATGCTG 59 1854965 1855123 TTGATGCCTTCCATCTGGG 60 Novel Rattus norvegicus 81 AABR07055288.1 ENSRNOG00000047893 ENSRNOT00000073083 1 1 1 92 7 1149784 1149803 TGGTAGAGGAACAAGGAGAG 58 1149857 1149878 CGAGTCCAAATTCTTTGGTG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000060220 ENSRNOT00000082761 3 1 1 60 10 40173228 40173247 GTTCTTCATGTATGCCCGTC 59 40173270 40173288 ATCAGTGCAGCTGAAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 2 2 2 97 5 77246516 77246535 CTGAGTTCAGACATCAAGGA 57 77246268 77246456 AGACAACGATCAGTCTTGG 57 Novel Rattus norvegicus 81 Rab37 ENSRNOG00000059793 ENSRNOT00000086469 2 1 1 80 10 103706603 103706622 TGATCCAATTCAAAGACGGG 58 103706662 103707622 TCACCACTTTATTCCTGAAGTC 58 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 2 2 3 73 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386149 121386167 GCTTCTGTCCAGACTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 3 2 3 74 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386150 121386168 TGCTTCTGTCCAGACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA41 ENSRNOG00000058518 ENSRNOT00000089467 3 1 1 61 1 16389861 16389879 AACAGTTGTAGCGTTCCTC 58 16389901 16389922 GAGGCATTAAATGGTGTAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 3 2 2 81 14 83884379 83885383 AAGTGAACTACGTCCCGTG 60 83884316 83884335 ATGGAGTAGCAGAAGGAAGG 59 Novel Rattus norvegicus 81 AABR07057644.1 ENSRNOG00000055655 ENSRNOT00000084233 2 1 1 67 7 82284582 82284602 GGAGCATCTATGGAAGTAACC 58 82284535 82284553 ATCAGAGAAGACTGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052520 ENSRNOT00000080959 1 1 1 60 10 93482425 93482444 CTTGACAAGGATGGAAAGCC 59 93482384 93482402 AAACAGTTGTTGCCTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044820 ENSRNOT00000070087 3 1 1 60 2 113091318 113091337 CCCATGTCATCTGATCTCAG 58 113091277 113091298 CCTCCTTTCAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105811.1 ENSRNOG00000052254 ENSRNOT00000084618 2 1 1 60 3 123810469 123810491 AGTGTATAGAATGGTTGCCTAGG 60 123810431 123810449 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910526 ENSRNOG00000040215 ENSRNOT00000081413 3 1 1 80 9 4658903 4663068 TGGACAAACAACTGTAAGTTCC 59 4658844 4658866 CATCCTGTAGAAGTGGTAGTAGG 60 Novel Rattus norvegicus 81 AABR07052587.4 ENSRNOG00000061162 ENSRNOT00000080016 3 1 1 70 3 63929875 63929895 TAATAACAAAGGCTCGCACTG 59 63929825 63929843 ATGTCCCTAAAGCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055789.1 ENSRNOG00000008398 ENSRNOT00000011102 2 1 1 80 7 10068390 10068408 TTGCCAGAAATCCTCCAGG 60 10064925 10068346 CATCCAACCTTCGAACCAC 59 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320,ENSRNOT00000073954,ENSRNOT00000074349 3 4 4 113 5 77902648 77902975 GATGTGGACAAGCTCAATGG 59 77902554 77902572 CAAGACATCGATGTGCTGC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059789 ENSRNOT00000082557 3 1 1 61 12 7115999 7116017 GGAGTTCTGGGCTGTAGTG 60 7115956 7115977 ATATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051998 ENSRNOT00000086201 1 1 1 60 14 62686965 62686983 GAGAAGCCATGTCTTCACC 58 62686923 62686946 GTTAGGCTACTAATCATTCAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051998 ENSRNOT00000086201 2 1 1 60 14 62687006 62687025 AGGTCTGGCTAGTGTATCAC 59 62686965 62686983 GGTGAAGACATGGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108588.1 ENSRNOG00000058408 ENSRNOT00000088163 1 1 1 80 10 12715339 12715357 GAGAGTGAAGACTCCCAGC 60 12715396 12715421 CTCTTTCTTTAGGTTAGGGAAGTC 59 Novel Rattus norvegicus 81 AC098622.1 ENSRNOG00000021123 ENSRNOT00000028681 2 1 1 60 1 222142456 222142475 GGAACTGCTCATTTCTCCAG 59 222142498 222142516 CACAGGCCTGATTAGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fendrr ENSRNOG00000051160 ENSRNOT00000076265 3 1 1 85 19 52996951 52996969 CCCTAAAGGAAGAGGCCTG 60 52995547 52995565 GTGTGGGAAATGGAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000060124 ENSRNOT00000085913 1 1 1 60 2 47092403 47092421 AGAGACTTTGACAGCCCAG 59 47092361 47092381 CATATAGGAGAACTGAGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.7 ENSRNOG00000048836 ENSRNOT00000071016 2 1 1 64 1 121263992 121264010 TTCTACCACTCAGGCTCCT 60 121263946 121263964 AATCCATGGCTAGAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061847 ENSRNOT00000080992 1 1 1 60 2 93817918 93817939 GTTGGAACGATACAGAGAAGAC 59 93817959 93817978 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061847 ENSRNOT00000080992 2 1 1 60 2 93817918 93817939 GTTGGAACGATACAGAGAAGAC 59 93817958 93817978 CATGAATTTGCGTGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053268 ENSRNOT00000088924 1 1 1 60 2 18273630 18273648 GAGAAGATTAGCATGGCCC 58 18273588 18273606 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051865 ENSRNOT00000085969 1 1 1 60 2 148386280 148386299 GCCTATAGTCCCAGCTACTC 59 148386239 148386257 AGAACTCCTGGACTCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054334.1 ENSRNOG00000048734 ENSRNOT00000073448 1 1 1 60 3 148589613 148589635 GAAACAGGATATCTCTGTGACTC 59 148589653 148589673 GCTAGCCTGAGCTACATAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061848 ENSRNOT00000081635 1 1 1 60 14 112898442 112898461 CCAATGAGGTTTATCCGAGG 58 112898401 112898420 CAGAATAATGTAGTGGCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001497.1 ENSRNOG00000018935 ENSRNOT00000025594 2 1 1 60 1 47587949 47587970 ACCATTTCTGAAATCAAGACCC 59 47587865 47587885 CTTCATCTTTCAGGGACTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057246 ENSRNOT00000084048 3 1 1 61 1 257148174 257148192 CCAAGCAAGCTCTCAATGC 60 257148131 257148151 TAGGTTAGAGGCTCTATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061707.1 ENSRNOG00000052718 ENSRNOT00000079266 3 1 1 60 4 140503343 140503363 GTGGACCAAAGCTTATTACCT 58 140503303 140503322 AAGATGATGAAGTGGACCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044977.1 ENSRNOG00000048535 ENSRNOT00000074647 1 1 1 179 20 29280285 29280305 GTAGGGCTGGCTCTTATGG 60 29280124 29280143 GAAGGTGCTGAACATCTCAG 59 Novel Rattus norvegicus 81 AABR07040494.1 ENSRNOG00000058719 ENSRNOT00000082854 1 1 1 80 X 102509862 102509905 AGCTGGATGTATAAGAAGGAC 57 102509787 102509805 TTCCATGATGACAAAGGCT 57 Novel Rattus norvegicus 81 U4 ENSRNOG00000058199 ENSRNOT00000089692 2 1 1 66 17 73715997 73716016 AATGAGGTTTATCCGAGGCA 59 73715950 73715971 CACAATGTTTACATGTATCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.1 ENSRNOG00000054639 ENSRNOT00000073168 2 1 1 80 4 173974772 173974797 GTCAAGTAACATATGGGAGACC 58 173974841 173974860 CATCAGTCCAGGATCTTCTG 58 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000057377 ENSRNOT00000084436 2 1 1 60 12 7032844 7032862 GGTTTGGAAAGGACTGGGA 60 7032802 7032820 TCTGTGGAATGGTTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0449.2 ENSRNOG00000051316 ENSRNOT00000076753 2 1 1 60 14 45025521 45025539 TCAAGAGAAGTGGTGGAGG 59 45025561 45025581 TAATGCTGTCTGGGTAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 3 1 1 94 19 44600184 44601291 GATGATGGAAGACTTTAAGAAGGAC 60 44600114 44600133 GTGTTTCCTCTTTAAGGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030378.1 ENSRNOG00000060404 ENSRNOT00000080001 2 1 1 111 10 83313349 83313368 CAATGTCCCAATCTCCCAC 58 83313441 83313462 CAACAGACAGGTTTAATCTCCA 58 Novel Rattus norvegicus 81 SCARNA20 ENSRNOG00000061305 ENSRNOT00000082966 3 1 1 78 17 61052825 61052844 TTCTTGTCCTTTGAGCTACG 58 61052766 61052784 AAATCTTCCTCACAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054283 ENSRNOT00000088451 1 1 1 60 2 259794526 259794546 TGGTTTGGCTGATTTAGATGG 59 259794564 259794586 GTTTATAGAATGCTGAGGGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051665 ENSRNOT00000079693 2 1 1 60 3 51875184 51875202 GACTGCTGTGTCACATGTG 59 51875142 51875166 GAATGTAGACATAACCTCTTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0822.1 ENSRNOG00000051261 ENSRNOT00000077064 1 1 1 74 13 77264732 77264750 TTCTCTGCCTAGGAAGCTG 59 77485157 77485175 TCTGAGCAATGAATGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0822.1 ENSRNOG00000051261 ENSRNOT00000077064 3 1 1 75 13 77264732 77264750 TTCTCTGCCTAGGAAGCTG 59 77485157 77485176 CTCTGAGCAATGAATGCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059877.1 ENSRNOG00000039626 ENSRNOT00000060755 3 1 1 60 4 39727923 39727944 GATGAAACTCCTATGTTTGACC 57 39727884 39727903 TTGTATTGTGACTCCAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041998 ENSRNOT00000063751 2 1 1 60 10 3399557 3399579 CCTTGATTATGACCAATCACCTC 59 3399519 3399537 TATTAACCAGGCCCTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044786 ENSRNOT00000070053 1 1 1 64 2 166385288 166385306 TATACGCCCTGATCATGCC 59 166385242 166385260 CAATTCAGATGCAGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028668.1 ENSRNOG00000060417 ENSRNOT00000085909 1 1 1 60 17 79829478 79829496 CTGTTCGTTGAGCCAAGTC 59 79829436 79829454 TGCATCCTTTAACCAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028668.1 ENSRNOG00000060417 ENSRNOT00000085909 2 1 1 60 17 79829485 79829503 GGTGATGCTGTTCGTTGAG 59 79829443 79829463 TTTAACCAGCAGAATTGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059161.1 ENSRNOG00000051942 ENSRNOT00000082504 2 1 1 82 4 5848770 5904599 TGCCTGCTGATGTATTTGTG 59 5904644 5904662 TGAATGAATCCCAGTGGCT 59 Novel Rattus norvegicus 81 AC099360.1 ENSRNOG00000025214 ENSRNOT00000032728 1 1 1 60 4 7052981 7052999 GGGAACAATGTGAAGACCA 58 7052939 7052960 CTTCAAATACCCACATCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051718.1 ENSRNOG00000052047 ENSRNOT00000088887 2 1 1 60 3 20050332 20050354 CTCCTGATCTATTATGCATCCAC 59 20050294 20050312 CACTGCCACTAAACCTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057361 ENSRNOT00000085324 3 1 1 61 14 97920960 97920978 AGAGACTTTGACAGCCCAG 59 97921001 97921021 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000052521 ENSRNOT00000086149 1 1 1 61 1 53236728 53236748 CCAGCCATGTAGACAAATGAG 59 53236687 53236705 TTATGTGGGACTGTTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362999 ENSRNOG00000004239 ENSRNOT00000005614 1 1 1 60 6 59300462 59300481 ATGAAATCCTCAGTGACCCA 59 59300419 59300437 AAAGCCACCATGACTTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000046917 ENSRNOT00000074511 3 1 1 60 12 28997856 28997875 ATACCATACTGGACATGCCT 58 28997897 28997916 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053871 ENSRNOT00000089811 1 1 1 60 1 261936143 261936161 CATTGAGGTACCACTGCTG 58 261936101 261936120 CGTAGTTATAGCCTGTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 3 1 1 67 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814016 165814034 ACTACATCACTGTGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000054760 ENSRNOT00000090961 2 1 1 60 1 47702740 47702759 CCTTACCAGCAGATGTAAGC 59 47702699 47702717 ACAGAGGATCGGTCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563091 ENSRNOG00000052444 ENSRNOT00000084021 2 1 1 60 4 28306423 28306441 ATGAAGGGAAAGAAAGCGT 57 28306381 28306402 GCTATGTTGTAAGTGTCATACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052296.1 ENSRNOG00000055541 ENSRNOT00000090213 3 1 1 67 3 45498241 45498259 TACTGGGTTTGGAATGCCA 59 45498092 45498113 GTAATAAATCGTCATGGTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0026.4 ENSRNOG00000059066 ENSRNOT00000089400 2 1 1 82 20 2589713 2602375 GCTCCTTGAGGATATTTCTCC 58 2589651 2589669 AAATGACTGCAGTCTCCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052712 ENSRNOT00000088262 1 1 1 67 1 27540920 27540938 AAGTATTGCTGGTGTGGCT 60 27540871 27540889 ACATAGCTTCCCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055517 ENSRNOT00000087941 2 1 1 60 1 56863002 56863025 GACTACAGAAAGTCTAGAACAGGA 60 56862965 56862984 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055268 ENSRNOT00000078933 1 1 1 60 6 91633139 91633160 CCTGCTTTCTTTGGAATATGTG 58 91633100 91633121 CTTCAACTATGTGTATAGCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055979 ENSRNOT00000080636 2 1 1 60 6 92997137 92997156 GCAGTATCGTAGCCAATGAG 59 92997096 92997115 AGAGCACCAATGAATTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059185 ENSRNOT00000078501 2 1 1 62 6 67720601 67720620 TAACTTGTTGCATTTGCCTC 57 67720558 67720576 CACAGGAATCCTTTAGGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 1 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395934 CCAAACACCATGAAGAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118350.1 ENSRNOG00000036784 ENSRNOT00000055170 3 1 1 60 1 172719165 172719183 GGAGAAAGTGATGTGGCTG 59 172719123 172719141 CTGGATTCACTGCATCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123185.1 ENSRNOG00000052414 ENSRNOT00000077638 3 1 1 79 15 108924511 108924531 TGATTTGCTTTCTACAGTCGC 59 108924574 108924592 GAAGTGAGTCCGACCATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 1 1 1 226 1 204320864 204320882 TCATTCCCTGTACAGCCTG 59 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061439 ENSRNOT00000080843 1 1 1 60 1 260133586 260133606 CCAATGAGGTTTATCCAAGGC 59 260133628 260133646 GGTCACAAGACTAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056872 ENSRNOT00000081231 1 1 1 60 14 77966039 77966057 GTAGGTCAGTAGGTGGCAG 59 77965997 77966015 CACAGTTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054881 ENSRNOT00000084219 2 1 1 64 2 234693459 234693477 TGAGGTTTATCCGAGGTGC 60 234693413 234693433 AACAGCTGATCTTGTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053951 ENSRNOT00000089926 3 1 1 65 10 111097588 111097606 GAGAAGGGATTAGCATGGC 58 111097541 111097560 TTAAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051936 ENSRNOT00000081868 1 1 1 60 2 171006103 171006124 GGAAGTAGGAGTTGGAATAGGA 59 171006064 171006082 CCTGGAGGTACTGTGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 2 1 1 60 X 73622638 73622657 TATGCAAGATGCAAGCTCAG 59 73622680 73622698 ACCCAGGTCACTAAACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 3 1 1 60 X 73622639 73622657 ATGCAAGATGCAAGCTCAG 59 73622681 73622699 AACCCAGGTCACTAAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046771 ENSRNOT00000054229 3 1 1 60 3 41769675 41769694 CCCGATCTCTTCTGATCTCG 60 41769715 41769735 TCTCATCCAAGGACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000057997 ENSRNOT00000091218 1 1 1 60 4 71663367 71663387 TGTCTAGTACTGGTTCCAGTC 59 71663408 71663427 CAGGTGTCAAAGGTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044082 ENSRNOT00000069349 1 1 1 60 2 48907266 48907286 CGATCTTGGAAGCTAAGAAGG 59 48907306 48907326 AGAACTACAGATCTTCCACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 1 1 1 60 4 183450207 183450225 AGTCTTGATTCACTGGTGG 57 183450249 183450267 ATATGTTTCTGGTCTGGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 2 1 1 61 10 61754621 61754642 GGAGCCAATGATGTCTTTATCC 59 61754664 61754682 TGTGCATCACTGAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 3 1 1 61 10 61754622 61754643 GAGCCAATGATGTCTTTATCCA 59 61754665 61754683 GTGTGCATCACTGAGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052443 ENSRNOT00000086181 1 1 1 60 1 252595061 252595079 GTGAAGATTAGCATGGCCC 59 252595103 252595121 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC239813.1 ENSRNOG00000053042 ENSRNOT00000077708 1 1 1 80 Y 210581 214541 GATTTCTTTGGATGATGCTGG 58 214582 214601 GGATCACTTTCTGACTCTGC 58 Novel Rattus norvegicus 81 AABR07015078.2 ENSRNOG00000059504 ENSRNOT00000080984 2 1 1 61 14 46650337 46650355 TGTTCACCTTGGAGACCTG 59 46650294 46650312 GAGAGGGTGTAAATCTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053837.1 ENSRNOG00000054840 ENSRNOT00000077213 1 1 1 60 3 129857263 129857281 CTCGCCTGCATTTACTCTG 59 129857305 129857326 TCTTATCCTCCGTGACCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07012342.1 ENSRNOG00000050472 ENSRNOT00000049525 2 1 1 60 2 194084429 194084447 AAACCGCATTGAGTTCCAC 59 194084387 194084406 AATGAAGGCCATCATTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059272 ENSRNOT00000083392 2 1 1 60 5 136057609 136057630 CAGATCGTATAAATCTTTCGCC 58 136057649 136057669 ACTCAGAATTGTTCCTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 2 1 1 60 1 213460768 213460788 TAAACCTACCCTGTGTACACC 59 213460808 213460828 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059637 ENSRNOT00000080375 2 1 1 61 1 267483403 267483423 GGAGTCTATGTCTACGCTCAG 60 267483443 267483464 TGGTAGGCTGTTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 3 1 1 60 Y 705881 705900 ATGCATTTATGGTGTGGTCC 59 705840 705858 ATGCTGGGATTCTGTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042607.1 ENSRNOG00000060419 ENSRNOT00000078228 1 1 1 94 19 248693 248725 GATTAAAGAGCTGCAGGAGAG 59 249244 249262 GATTTGGCCTGAAGTGTGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056196 ENSRNOT00000079299 1 1 1 60 14 48387621 48387642 ATACAGAGAAGATTAGCATGGC 58 48387662 48387681 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054755 ENSRNOT00000082765 1 1 1 60 10 50199440 50199460 ACGATACAGAGAAGACTAGCA 58 50199482 50199500 ACGCTTCACTAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565989 ENSRNOG00000013940 ENSRNOT00000047544 1 1 1 80 2 127916268 127916288 CGCTTTAGAGTATCACGTTGG 59 127916328 127941960 ACATTTGAACTGCTGACAGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059273 ENSRNOT00000079541 3 1 1 71 1 189735807 189735825 ACAGAACGGAGAAGATCGG 59 189735859 189735878 TAATACTGGGAAGCACCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061044 ENSRNOT00000077686 1 1 1 60 5 50252873 50252897 GAGAAGAAAGACTGTATCTATGCTC 59 50252911 50252933 CTCCCAATCATTCAGATGTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060969 ENSRNOT00000088467 3 1 1 60 1 90304180 90304198 GGAAGCTATGTACTGGGTC 57 90304138 90304157 AGTGCTGGAAAGTTCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127,ENSRNOT00000077423,ENSRNOT00000089439 2 3 4 85 1 49681982 49844388 ACAGTACAGAACTGTGACCT 58 49681916 49681934 GAGGCATTTGTTTCGTGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058302 ENSRNOT00000090879 3 1 1 68 14 45942017 45942036 TAGAGGCTTTACAGGTGTGC 60 45942066 45942085 ATAGTCTTTCACCTCCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056412 ENSRNOT00000088035 2 1 1 69 6 20219783 20219802 CCCTTGTCAACACAAATCCT 58 20219834 20219852 TTATCTTTGCACAGGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060673 ENSRNOT00000081100 2 1 1 60 14 106140489 106140507 TCTGCCCTTAGAAGTGCTG 59 106140447 106140466 TCTGGCACCTACTGATTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060673 ENSRNOT00000081100 3 1 1 60 14 106140452 106140471 CCCATGTGAATCAGTAGGTG 58 106140411 106140435 TAGAACACTGAGATTAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059301 ENSRNOT00000086989 3 1 1 60 6 137105065 137105083 TCTAGGGTTGAATCAGCCG 59 137105023 137105041 CTATGCCAAGAACCGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058354 ENSRNOT00000082373 3 1 1 62 6 47627165 47627186 ATGATTCAGAGAAGATCAGCAC 58 47627124 47627142 GAGCGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060186 ENSRNOT00000077664 1 1 1 60 14 32748903 32748922 GAGGAGAGGCTATGTCAAGG 59 32748941 32748963 GGCTACTAATCATTCAGATGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049048.1 ENSRNOG00000054330 ENSRNOT00000085610 3 1 1 93 5 101640205 101640225 ACTTTACAGTTAAAGGCAGGG 58 101640278 101640299 GATTTACACAGAAGCTCCAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060363 ENSRNOT00000078777 1 1 1 60 1 143496591 143496609 GTGCTCATGAAGTAGCACG 59 143496632 143496651 GGCCAGACTAATCTTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061060 ENSRNOT00000082515 2 1 1 60 3 120039706 120039725 CCCACATTGATTAGGCTGAC 59 120039665 120039684 AAATTGTGAGGGAGGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006860.1 ENSRNOG00000053424 ENSRNOT00000086885 3 1 1 60 1 260832285 260832303 TGGAGATTCCCTCGTAAGG 58 260832326 260832345 ACCAACTTACCACTCACTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000054326 ENSRNOT00000081120 1 1 1 60 1 100224884 100224902 TGTATAGCACTGGGCTCTG 59 100224926 100224944 GATGTCAAAGGTCCTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065363.1 ENSRNOG00000061478 ENSRNOT00000090405 3 1 1 92 6 124210165 124210183 TGCTAATTCTCCTGCTGCT 59 124210239 124210258 ATCTGCCAAGACAGCAGAG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059980 ENSRNOT00000085577 3 1 1 60 1 258163155 258163175 GACACAGATAATTAGCATGGC 57 258163115 258163135 TGGAATCCTTCCTGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017604.1 ENSRNOG00000054270 ENSRNOT00000085162 2 1 1 79 15 29157491 29157509 TTCACTAGTGCTCCTGTGG 59 29157739 29157757 CAATGAGGGATTCTGGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058537 ENSRNOT00000079906 3 1 1 61 12 16259372 16259390 GAGAAGATTAGCATGGCCC 58 16259414 16259433 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052482 ENSRNOT00000082829 2 1 1 62 12 30182229 30182247 GAGAGGCCATGTCTATGCT 59 30182270 30182291 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061001 ENSRNOT00000082243 1 1 1 61 3 163059820 163059838 GAGAAGATTAGCATGGCCC 58 163059862 163059881 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055303 ENSRNOT00000084489 3 1 1 60 3 103099601 103099622 TTGTAGATGTGGTTGCTATGTC 59 103099641 103099661 AGACATACTCTCCTTTCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017748.2 ENSRNOG00000053763 ENSRNOT00000090632 2 1 1 80 15 30621416 30621612 CAGATTTGCTGGGTGAAAGG 60 30621654 30621673 CAGAACAGAACTGGTTCCCT 60 Novel Rattus norvegicus 81 AC115322.2 ENSRNOG00000054405 ENSRNOT00000085983 3 1 1 138 3 175708731 175708987 ACGTATGCTGGGTAGAGTG 59 175709089 175709107 CCCTTTCTGCATTCTTCGG 59 Novel Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 1 1 1 60 2 78427451 78427470 TGATGTGAAATGGCAGTCAC 59 78427357 78427428 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009106.2 ENSRNOG00000057159 ENSRNOT00000079449 2 1 1 81 2 87028514 87028533 TTCTGGAGCAAAGACCAGAG 60 87028574 87038879 GGATCATTGAGTGCTATTCCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058969 ENSRNOT00000081128 2 1 1 70 5 164201035 164201053 GCTCCAGTAGCACATATCC 58 164201087 164201105 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120070.1 ENSRNOG00000054181 ENSRNOT00000085373 1 1 1 80 1 148251718 148267727 AACAGAAACAGGCAAACCAC 60 148267766 148267788 CACCAATGAGATCCATGATACTG 59 Novel Rattus norvegicus 81 AABR07004947.1 ENSRNOG00000059184 ENSRNOT00000088291 3 1 1 82 1 171485357 171486064 CTGTGGAAAGAGGATCATGAG 58 171486108 171486127 TTTCTCAACAGCAAAGAGGG 58 Novel Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 2 1 1 60 20 33493093 33520847 ATCAACCACAAGCTTGAGG 58 33493051 33493071 CCTGAGTCTCAGTCAGTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051996.1 ENSRNOG00000033278 ENSRNOT00000041305 2 1 1 60 3 31803184 31803204 TCAGATGAGGCACCTAAAGAC 60 31803226 31803244 TGTTCCTTCACGGAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054798 ENSRNOT00000080958 3 1 1 60 1 75508716 75508736 TGTACCTGACTAATCTTGGTG 57 75508755 75508776 TGTATAGAGGAGATAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035641.1 ENSRNOG00000057141 ENSRNOT00000091323 2 1 1 103 12 20599582 20659186 CATTCATGCTCTCATTACTACCC 59 20599501 20599519 GCAGTGAAGGAGTCCTCTG 60 Novel Rattus norvegicus 81 AABR07049348.1 ENSRNOG00000008914 ENSRNOT00000011831 1 1 1 96 5 117973306 117973325 ACAGACAATTACAATGGGCT 58 117973382 117973404 GTGATTCATTAGGAACATGGC 57 Novel Rattus norvegicus 81 AC128394.1 ENSRNOG00000055972 ENSRNOT00000082011 1 1 1 88 1 12906978 12906996 CGGTCGAGATCAAGAAAGG 58 12907050 12907072 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AC098750.1 ENSRNOG00000053928 ENSRNOT00000085305 1 1 1 86 2 188762105 188762123 TTGTTCGCACCTGTTACCT 60 188762173 188762193 AGAAGAACAAGGATGGGCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000056986 ENSRNOT00000082922 2 1 1 60 1 136498029 136498047 GTTGTGAGTGTCCCTTTCC 58 136497987 136498005 AGTGTACAGCTTTGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053287 ENSRNOT00000090788 2 1 1 60 1 114337543 114337561 AGAAGATTAGCATGGCACC 58 114337501 114337520 AATTATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000052791 ENSRNOT00000077654 2 1 1 60 3 63024743 63024761 AACAGAACCCATGATGCAG 58 63024701 63024719 AGATCATACACGGTCACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 2 1 1 146 19 9112635 9112653 ATCATCTCTGCTGAGGGTG 59 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0853.1 ENSRNOG00000051292 ENSRNOT00000076046 1 1 1 80 13 80392525 80392939 GGAGATTACCGAGGAAGGC 60 80392463 80392481 CGAGATACACCACGAAGCA 60 Novel Rattus norvegicus 81 AABR07053866.1 ENSRNOG00000051005 ENSRNOT00000072407 1 1 1 88 3 131531515 131531533 CGGTCGAGATCAAGAAAGG 58 131531439 131531461 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000060036 ENSRNOT00000091776 3 1 1 65 1 196649595 196649614 AGCTTACCAATTGGAGTCCA 59 196649549 196649567 GAAGGCACAAATGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 1 1 1 60 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947109 144947127 TTCACAGGTCAGAGCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052215 ENSRNOT00000091709 1 1 1 61 6 87098939 87098957 AAGAGACTCCTTGGTGGTG 59 87098982 87099000 GAACTGCCATCTTCTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055477 ENSRNOT00000091269 1 1 1 60 1 163463370 163463388 CGTAGCCATTGTGTTTCAG 57 163463410 163463430 TCAAGTTTCCTGAACTTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115371.2 ENSRNOG00000052228 ENSRNOT00000089954 1 1 1 60 15 33478462 33478481 ACGACTTATGGTATTGCGAG 58 33478499 33478522 CTCATAAAGAGTAACAGAACGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0635.1 ENSRNOG00000051188 ENSRNOT00000075897 2 1 1 60 10 64592957 64592975 CACTTGGCTACTGTCACTC 58 64592915 64592933 TGCCTCTACCTACACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA54 ENSRNOG00000052577 ENSRNOT00000090108 3 1 1 60 1 216733174 216733193 CCAGTGCTACAGGATTTCCA 60 216733133 216733152 GAAACTGAAAGCCACTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000077057 1 1 3 98 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208419687 208419705 GTGACACTTACCCTGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054005 ENSRNOT00000080492 3 1 1 62 1 2720333 2720353 AACGATACAGAGAAGACAGCA 59 2720377 2720395 GGAACACGTCACGATTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 3 1 1 66 10 35058570 35058588 GTATGCTGTGTCACTCCCA 59 35058521 35058540 TTTCCTGCATTTCTTGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD86 ENSRNOG00000051605 ENSRNOT00000086450 1 1 1 60 3 122806417 122806436 GATTACAGTGATGGCTGACC 59 122806458 122806477 ATCACTCCCATAGTAGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000060868 ENSRNOT00000089475 1 1 1 60 6 103567632 103567654 CTACATGAATATGGAGGTCTCTG 58 103567594 103567613 GGTGAACGATCAGACTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.1 ENSRNOG00000057039 ENSRNOT00000078963 1 1 1 60 13 82126921 82126941 ACACCCTTCATAATAGACCCA 58 82126881 82126901 CTTGCTTGGTTAAAGTCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.1 ENSRNOG00000057039 ENSRNOT00000078963 2 1 1 60 13 82126519 82126540 GTACAGAGACAGACAGATAGAC 57 82126480 82126498 GTGTGGGTTCATTTCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052544 ENSRNOT00000082610 1 1 1 67 14 5375516 5375534 GTTGAGTTCAGTTCAGGGC 59 5375467 5375488 CTTAGTCACTTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015555.1 ENSRNOG00000045758 ENSRNOT00000072473 3 1 1 108 14 63295543 63295561 GACAGAGAAGGAGGGAAGG 59 63295453 63295472 GTAATTCACATGCACATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058179 ENSRNOT00000085773 2 1 1 60 5 74897190 74897208 CTGTAGTGTGCTATGCCGA 60 74897148 74897167 GGAGGTCACCATATTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059067.1 ENSRNOG00000055910 ENSRNOT00000083917 1 1 1 92 4 2972630 2972651 TTCTTCTGACTCACTTGGCA 59 2972706 2972724 AAGATGGTCCAGGGAACAC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000060073 ENSRNOT00000078984 2 1 1 81 14 92640103 92640121 GATACCATGATCGAGGCGT 60 92640166 92640184 ACATTTGGAGAAGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059327 ENSRNOT00000083913 1 1 1 60 1 116758191 116758212 CAACAGAAAGTCAAGAACAGGA 59 116758152 116758172 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129753.2 ENSRNOG00000055799 ENSRNOT00000090617 2 1 1 60 10 55617758 55617778 AGCTTCAGAAGTTCTGTAGTC 58 55617797 55617818 CCAATGGATTTCTAGTCCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061843 ENSRNOT00000084247 1 1 1 60 5 109672143 109672164 GATACAGAGAAGATTCGCATGG 59 109672104 109672122 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053137 ENSRNOT00000077459 1 1 1 60 5 101613991 101614009 TCATCGCCTGCATATTCCT 59 101613949 101613967 TTTGTCTCCTCAGTCACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053137 ENSRNOT00000077459 3 1 1 60 5 101613975 101613998 ATATTCCTACGACTTCTCAGAGTC 59 101613938 101613956 TTTCCTGCAGGTTTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068750.1 ENSRNOG00000056482 ENSRNOT00000091931 1 1 1 60 9 117484215 117484235 GGAAGAACACCAGAAATTGCA 60 117484175 117484199 TATACTTCTGTACCAGTTTCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056272 ENSRNOT00000078460 1 1 1 62 6 82137826 82137844 ATGCTCACTAAAGCAGCAG 58 82137869 82137888 GGGACAAAGATAACCTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017635.2 ENSRNOG00000061833 ENSRNOT00000082167 3 1 1 73 15 29443322 29443341 TTACTCCTAGGCCTTCACCT 60 29443131 29443149 CTTTGTTTGACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019663.1 ENSRNOG00000057509 ENSRNOT00000089541 1 1 1 60 13 759821 759842 ATCCATCATGTTCTAGTCACAC 58 759860 759881 CTAGCATCTCTACTTCTTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109023.1 ENSRNOG00000055888 ENSRNOT00000077254 2 1 1 83 4 88082675 88082698 CTAGCCAATATGTTTCTCTGCT 58 88082739 88082760 CATTTGGCAGGAAATCATATCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059425 ENSRNOT00000081295 3 1 1 60 1 198235271 198235293 CATACAGAGAAGATTAGCATGGC 60 198235313 198235331 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054606 ENSRNOT00000090135 1 1 1 60 13 14773194 14773214 AAGTACATCAATAGGTGGCAG 58 14773236 14773254 CCAGTCAGAACACTAAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058074 ENSRNOT00000089453 3 1 1 60 6 61280789 61280807 GTCACATGTGCACCAAGAG 59 61280747 61280767 CAGAACACTGAGTGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 2 1 1 60 4 102514759 102514779 AGTTACTGTCTGCATCTCTGG 60 102514801 102514819 ATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052808 ENSRNOT00000085212 2 1 1 60 9 64894160 64894178 TGCACTAAACCTGGAAGGA 59 64894201 64894220 ATTCCGTGTCATCTGTAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115509.1 ENSRNOG00000049126 ENSRNOT00000071441 3 1 1 121 2 78633781 78633799 GAGTGAAGACTCCCAGCTC 60 78633882 78633905 CCAATCTATTTGGTCTGTAGGC 59 Novel Rattus norvegicus 81 AABR07058360.1 ENSRNOG00000044626 ENSRNOT00000069893 3 1 1 166 7 111756172 111756193 CCTTACTTCACTTCCATATGCT 58 111756314 111756338 TCCCTATAAGAATTAGCTTCTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058896 ENSRNOT00000077643 2 1 1 60 6 30630936 30630954 GATGAAGAACGCAGCTAGC 59 30630976 30630996 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053176 ENSRNOT00000083101 2 1 1 60 13 94767453 94767471 AGAACCTCCAAACAAGCCT 59 94767411 94767430 GGTAAATGACGAACCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 1 1 1 60 7 31713763 31713784 GAACTATCCAAAGATTAGCGTG 57 31713805 31713823 GACTGCTTCATGATTTGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061068.2 ENSRNOG00000060654 ENSRNOT00000087659 3 1 1 82 4 103524358 103524708 TTTGGATTCCAGCTTCCAG 58 103524753 103524772 AGAAGCTTGATCTCCAAGTC 57 Novel Rattus norvegicus 81 AC123185.2 ENSRNOG00000055266 ENSRNOT00000090037 1 1 1 80 15 108869255 108869275 AAAGATACACCGATCCACAC 58 108869194 108869213 TGTCTGTTTCCTCTATGCTG 57 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058881 ENSRNOT00000083445 3 1 1 60 9 66499226 66499247 GTGTTGTTCTTACATCAGTCAG 57 66499266 66499286 CAAGCTAGGATGAACAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000054998 ENSRNOT00000080569 1 1 1 60 5 159232881 159232901 TAATTTACACAGCCAGACACC 58 159232920 159232941 AGCATATCGGTCATCTTAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 1 1 1 63 8 45701548 45701567 TAGTGCTATCTTCATGGCCG 60 45701502 45701522 TACTCTCACACCAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD70 ENSRNOG00000057685 ENSRNOT00000090276 1 1 1 60 20 43426120 43426140 GAAGTATTTCCTTTGGAACCG 57 43426162 43426180 TGTCTCAGTGATAGTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 3 1 1 85 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673892 110678051 TTCCTTCATGTTCATGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA16 ENSRNOG00000059721 ENSRNOT00000090263 2 1 1 65 4 173331629 173331647 AACCAGAGTGATTCCCAGG 59 173331582 173331600 GTCTGCATCTGTCACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057213 ENSRNOT00000081782 1 1 1 60 5 73513633 73513653 GGGTTTCGATTTATGGCAGAC 60 73513593 73513611 CAAGGGTTCTAGCAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059847 ENSRNOT00000080474 1 1 1 60 4 183569644 183569663 CAGAGAAGATTAGCGCATGG 59 183569603 183569623 ATGGTACACTTCAGAATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133265.1 ENSRNOG00000059203 ENSRNOT00000084514 2 1 1 99 8 46694494 46694554 GCGTCTCCAGTCTTTATTCTC 59 46694415 46694434 TGGTGATTTCCCATCTTTGG 58 Novel Rattus norvegicus 81 Telomerase-vert ENSRNOG00000054124 ENSRNOT00000090594 2 1 1 84 4 150151443 150151463 TTGTTATAGCTGTGGGTTCTG 58 150151379 150151397 ATGTCTGAACTTTCCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2bh ENSRNOG00000058187 ENSRNOT00000086538 2 1 1 61 17 44520026 44520044 TCGTGAACGACATCTTCGA 59 44519983 44520001 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059394 ENSRNOT00000089300 3 1 1 60 14 46687019 46687037 ATGAAGAACGCAGCTAGCT 60 46687060 46687079 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053982 ENSRNOT00000090805 3 1 1 60 10 65358153 65358172 GAAGATAGCGTGACTATGGC 58 65358192 65358213 TCCAATGTTAGGATCAATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059648 ENSRNOT00000091425 2 1 1 61 6 66031644 66031662 GGCTGTTCTGTCACATGTG 59 66031685 66031705 TGAGGGTAGACATAGTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051524 ENSRNOT00000081608 3 1 1 60 5 165257914 165257935 TGATCTCAAAGGAGTTCAAAGG 58 165257875 165257894 CAGGGATCAGCATATTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 2 1 1 60 15 87221769 87221787 TCAGAAGCTAAGCAGGGTC 59 87221808 87221829 AATATTAAAGGGAGGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060994.1 ENSRNOG00000060746 ENSRNOT00000079277 1 1 1 80 4 102351072 102351478 TGGATTCCTGCTTCCAGAG 59 102351522 102351540 AGAGGTTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000059610 ENSRNOT00000084040 3 1 1 60 10 46960677 46960698 AGTAATTTACACAGCCAGACAC 59 46960717 46960737 GTGATCAGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057170 ENSRNOT00000082641 2 1 1 60 4 116823530 116823551 TATGTCACATGTGCATTATGGG 59 116823491 116823511 CACATTGAGCATAGACAAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018062.1 ENSRNOG00000036382 ENSRNOT00000054499 1 1 1 61 15 38054893 38054911 ATCTCTGGGCGAGTATCTC 58 38054936 38054954 AAGGCTCAGAGGTCTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059234 ENSRNOT00000082362 1 1 1 60 10 43392298 43392316 CAGCCTGAGTAGGTTTCAC 58 43392339 43392358 TGTATCCTGTGACCCAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053164 ENSRNOT00000077778 1 1 1 63 3 11056809 11056828 TGCTTAGGCATCATGTACTG 58 11056765 11056783 GTAGTCCTTGCATAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051537 ENSRNOT00000077860 2 1 1 60 1 245891064 245891084 TGACTGTTCCTTAGCATTTCC 58 245891104 245891124 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.3 ENSRNOG00000055942 ENSRNOT00000088542 1 1 1 60 17 14687181 14687200 CTGCCAAGACAAAGGTTGAG 60 14687140 14687158 TTTGTGACGGTAGCAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.3 ENSRNOG00000055942 ENSRNOT00000088542 2 1 1 60 17 14686707 14686726 TCTTCGACACAGAGAAGGAG 59 14686666 14686685 GCTTTCTGATCAGCCTTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031485.1 ENSRNOG00000061292 ENSRNOT00000092199 2 1 1 60 18 15316546 15316565 AAACACATTTCTGCCTTGCT 59 15316588 15316606 AGAGTGGAAGCAGATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060819 ENSRNOT00000079179 1 1 1 60 13 2964765 2964788 GAGTACGATCTTCTAAGAACAGAG 58 2964728 2964749 TGTGCCTACTCATATTCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060474 ENSRNOT00000091544 3 1 1 61 10 72243987 72244009 CGATACAGAGAAGATTAGCATGG 59 72243948 72243966 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044905 ENSRNOT00000070172 2 1 1 60 3 110116756 110116774 TGAATGTGCCCAATCTTGC 59 110116797 110116816 CAGATATTAACAAGGCCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002564.1 ENSRNOG00000022227 ENSRNOT00000029823 1 1 1 60 1 77111790 77111810 CCTTCTGCATCCTTAACTGAG 59 77111831 77111850 AGTCCAACTTGACTGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052252 ENSRNOT00000084314 1 1 1 60 13 80079630 80079648 AGAGGCTACGTCTATGCTC 58 80079670 80079690 GTTGGGCTGCTAATCATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058332 ENSRNOT00000084623 1 1 1 60 6 29971614 29971632 ATACTTGATTCGGCAGCAC 58 29971572 29971591 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054523 ENSRNOT00000079075 1 1 1 60 4 106293120 106293142 GACTTATAGAGACTATGCAGGTG 58 106293162 106293180 TTCTGCCACCTACAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056229 ENSRNOT00000091459 1 1 1 60 20 2611285 2611305 CTAGAACTTCCAAACAGGCTC 59 2611323 2611345 AGACTTCACCTCATAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056229 ENSRNOT00000091459 3 1 1 60 20 2611115 2611136 CTGTCTACACATTGATCACCAG 59 2611152 2611175 CATCCTTAGAGCTAGTTAGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015002.1 ENSRNOG00000056869 ENSRNOT00000080087 2 1 1 88 14 44556989 44557008 CGGTCGAGATCAAGAAAGGA 60 44557060 44557083 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 U6atac ENSRNOG00000055021 ENSRNOT00000089427 1 1 1 66 3 6083981 6083999 TGACAAGGATGGAAGAGGC 59 6083933 6083951 AAAGTAGGTGGCAATGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 3 1 1 60 13 78855392 78855412 AGTGATGTGATGATTCTGCCA 60 78855431 78855452 AAATGGAACGGTTGTAAAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.4 ENSRNOG00000061301 ENSRNOT00000087532 3 1 1 60 13 52265993 52266011 ACGTCTTGCAGAAATTGCC 60 52265951 52265970 CAGTAAGTGCTTGTCAAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000056426 ENSRNOT00000091170 1 1 1 60 20 45302005 45302024 TGAGCAGGTAGCAATTACAG 58 45301964 45301984 TTTCAGCAGGATTAATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069336.1 ENSRNOG00000054772 ENSRNOT00000083752 2 1 1 87 8 17694319 17694338 ATTCAGGTCAGACAACACTG 58 17690999 17694269 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 1 1 1 60 X 8059528 8059546 TTTGCTCTTCTTTGCCTGC 59 8059486 8059505 GGAAGTCCAAGGATCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045321.1 ENSRNOG00000046812 ENSRNOT00000073740 2 1 1 65 20 42964160 42964178 TTTGTTAACAGGCTGTCGT 58 42964112 42964130 GATACCAGGCAAATAGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053519 ENSRNOT00000078287 3 1 1 60 13 9637995 9638015 GGAACTTCCAAATAAGCACCA 59 9637955 9637974 GAGTCATACACCATGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055704 ENSRNOT00000085093 2 1 1 60 5 16731970 16731990 CTGCTGTGTCACATATTCCTC 59 16731930 16731949 CACAGCATGGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053426 ENSRNOT00000082155 3 1 1 63 19 17357808 17357827 GAGCATGCCTATGTCTACAC 58 17357851 17357871 GGCTACCAATCAATCTTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 3 1 1 75 13 109990799 109990817 ATGTGTTTCACTCCAGACG 58 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045106 ENSRNOT00000070373 1 1 1 60 19 35035189 35035210 AATCTAGTCTGATCTCAGATGC 57 35035231 35035249 CATATCCCATCCAAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060452 ENSRNOT00000085791 3 1 1 63 15 55520342 55520360 AAAGTCAAGACCACACGGA 59 55520297 55520315 ATAGCAAAGACCCTTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061852 ENSRNOT00000087946 3 1 1 60 3 109913370 109913392 GATACAGAGAAGATTAGCATGGC 59 109913411 109913430 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057990 ENSRNOT00000090954 3 1 1 65 15 110160725 110160744 AAGAGAAGGTTAGCACTCCC 59 110160772 110160790 GTATGCGTGTTGTTAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064253.1 ENSRNOG00000060718 ENSRNOT00000090441 3 1 1 80 6 71446983 71447006 AGATTTCACCTCACATGCGA 60 71446922 71446942 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U3 ENSRNOG00000061360 ENSRNOT00000084803 1 1 1 62 20 45357217 45357239 CTAGAGAAGTTTCTCTGACTGTG 58 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029741.1 ENSRNOG00000055994 ENSRNOT00000088207 3 1 1 61 10 48890808 48890828 GACAAACCCGATATGGTTGAG 59 48890848 48890869 GTTTCTGTCTTCTTCAACTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053326 ENSRNOT00000080469 3 1 1 64 10 65514771 65514789 GTGCTCCTTATAGTGGCAC 58 65514725 65514743 TGTGTCCTCCTTAAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052683 ENSRNOT00000089956 3 1 1 61 15 33968001 33968020 AGAGAAGATTAGCATGGCCC 60 33968044 33968062 AATATGGAGCGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054120 ENSRNOT00000082194 2 1 1 60 18 17811417 17811438 CTCTAAAGAAGCTACTGATGGG 58 17811378 17811399 GTTTGAGTGAGGAGAAAGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058349 ENSRNOT00000084877 1 1 1 60 18 47569959 47569978 TACCTCGATTGACTGTCCAC 59 47569998 47570019 AAGGGAGAAAGTGTAGAATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD23 ENSRNOG00000059690 ENSRNOT00000080874 2 1 1 63 1 24306081 24306099 CATTCTGAGGGTAGGGCTG 60 24306126 24306144 TCAAGCAATGGTCCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr1 ENSRNOG00000049693 ENSRNOT00000041838 1 1 1 88 11 33845740 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 LOC102556347 ENSRNOG00000049911 ENSRNOT00000085961 2 1 1 89 11 33813364 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846295 33846313 TGCAGACATCTTGGGTACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056053 ENSRNOT00000091700 1 1 1 60 18 84431217 84431236 CCCTTGTGCTTTAGTAGGTG 58 84431259 84431277 AGGTCAGAACATTGAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000060546 ENSRNOT00000088896 3 1 1 60 X 123394027 123394046 GAGATACAGGTCATGCTTCC 58 123394069 123394087 GCAGGTCTCATTGTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060360 ENSRNOT00000084923 1 1 1 60 18 31444770 31444791 ATGATACAGAGATTAGCAAGGC 58 31444810 31444830 CAGAACGATTCAGGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051439.1 ENSRNOG00000049599 ENSRNOT00000072773 1 1 1 60 3 11348214 11348235 TGTTTAGACTACCTGTTCAGGA 59 11348256 11348274 CAGCCTAACCAATGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.3 ENSRNOG00000054322 ENSRNOT00000092000 1 1 1 73 16 26583540 26583561 ATGCATCCATAGTGGTGGG 60 26583595 26583616 TGTGCAATTATAGTCACAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000058165 ENSRNOT00000088040 3 1 1 61 6 20467587 20467606 CACAGTCAGTTACAGATGGA 57 20467628 20467648 CAAATGGAGTAGTGAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.1 ENSRNOG00000031313 ENSRNOT00000042660 2 1 1 60 10 34355981 34356002 GAATAAGGAATGTTCCGTACTG 57 34356020 34356041 TCATTCTCATTACGCTTTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ30 ENSRNOG00000053353 ENSRNOT00000083217 1 1 1 60 10 70512030 70512051 TGCAATGATGAGTGAAGTACAG 59 70512072 70512090 GTCAGAGCCATAGCAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029504.1 ENSRNOG00000061927 ENSRNOT00000090496 3 1 1 61 10 31195752 31195774 GAGTAAACAATGACTTGTCCCAG 60 31195795 31195813 GAGGAGAAGGTCACACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060577.1 ENSRNOG00000015328 ENSRNOT00000020546 2 1 1 60 4 81302200 81302220 TCTTCCTCAAAGAGTTACAGC 58 81302239 81302260 CCCTTCTCGTAGTTACTTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061296 ENSRNOT00000079804 1 1 1 60 18 39796112 39796134 CTTGGTGACAGAGAATAGAAAGG 59 39796148 39796172 CAGGTATACATAGGTTAGAACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056700 ENSRNOT00000085942 2 1 1 60 15 1722757 1722775 GAGAAGATTAGCATGGCCC 58 1722798 1722817 AATATGGAACGCTTCACGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053921 ENSRNOT00000084007 3 1 1 61 7 37021875 37021894 CGACTGCTGTGTCATATGTG 59 37021917 37021936 GAGCATAGACATAGCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057576 ENSRNOT00000078293 2 1 1 60 15 89135114 89135134 GTGCTATGTCTACTCTCAGTG 58 89135152 89135174 CTGTTAGGGTGCTAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058064 ENSRNOT00000083883 1 1 1 60 6 88546654 88546673 TTTGTCCCTAGAGGTATTGC 57 88546613 88546631 CTACTGAGGTGACATGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061503 ENSRNOT00000088341 1 1 1 60 5 70530758 70530777 AGAACATCCAAAGTTTGCAC 57 70530717 70530738 TTCATAGAGGAATAGGCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066792.1 ENSRNOG00000054698 ENSRNOT00000091215 3 1 1 80 9 16348879 16349091 GCTGGAAGACACAGAAGAG 58 16348817 16348835 TAATAGCGCTCTTCCTCCT 58 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000057109 ENSRNOT00000087653 3 1 1 61 15 79318840 79318860 TGAAGACCAGCAATTGTACAG 59 79318799 79318818 AAACCACAGTTCTTTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061838 ENSRNOT00000085717 1 1 1 67 15 14527532 14527550 CATATGGCTGCTGTGTCAC 59 14527483 14527506 CTTAGATGTAACCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049202 ENSRNOT00000073244 2 1 1 60 7 115470680 115470698 CTACAGCGATACCACACTG 58 115470638 115470657 AGCTCTGTTTAGCTTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125982.1 ENSRNOG00000045580 ENSRNOT00000073852 3 1 1 109 7 130408084 130408102 CAAGCCAGATGCGATTCTC 59 130408177 130408195 TTTGCAGAGACTGATAGGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055415 ENSRNOT00000085192 1 1 1 60 20 10593498 10593521 GACTGAAGTTAGAACGATACAGAG 59 10593461 10593479 AATTTGCATGCCATCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054443 ENSRNOT00000090503 2 1 1 60 20 36760112 36760131 GCATTGTAGGTGTGACAGAG 59 36760153 36760172 TCACAGGTCAGAAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000060911 ENSRNOT00000081942 1 1 1 60 19 43399787 43399808 TGTCTCTTCTCTGACATTCTCC 59 43399829 43399847 CAGCCTCATCAGATCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000060911 ENSRNOT00000081942 3 1 1 61 19 43399781 43399801 AATTCGTGTCTCTTCTCTGAC 58 43399824 43399842 TCATCAGATCAGCAAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055086 ENSRNOT00000088129 1 1 1 60 5 18803928 18803947 AACTAGGTGGCAGATAGAGG 58 18803887 18803905 ATTCAGTTGTTCGCTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061533.1 ENSRNOG00000048087 ENSRNOT00000075654 3 1 1 64 4 132360805 132360826 TGTATGTCTGTATGTGCATGTG 59 132360851 132360869 GCTGTACATGCTCATGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052853 ENSRNOT00000081391 2 1 1 60 19 61757573 61757593 GCATTATTAGGTGGTAGAGGG 58 61757613 61757633 TTCACAGGTTAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034695 ENSRNOT00000052818 2 1 1 60 19 38074280 38074299 TCTCGTAAGTTAAGCAGGGT 59 38074239 38074257 TATTCCTAGGTGGTCTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034695 ENSRNOT00000052818 3 1 1 60 19 38074277 38074296 CGTAAGTTAAGCAGGGTTGG 59 38074236 38074257 CAATATTCCTAGGTGGTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060539 ENSRNOT00000078004 2 1 1 60 11 81376560 81376579 CTGCACTGGATTCCAAAGAC 59 81376519 81376537 ATGACAAAGGACACTGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055515 ENSRNOT00000078194 2 1 1 60 7 712946 712964 GATGAAGAACGCAGCTAGC 59 712904 712922 GTCCATGATCAACGTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055052 ENSRNOT00000083053 3 1 1 60 9 115765966 115765985 GGTAAATAGGAAGCCGTGAG 58 115766005 115766026 CTCTATAATCTCCAGAGCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060850 ENSRNOT00000084740 2 1 1 61 11 2227654 2227672 CCCTATAGGTGTTGTGGGT 58 2227611 2227629 CTCCTTCTGCCACCTATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056488 ENSRNOT00000084914 3 1 1 60 19 49521682 49521703 TTTACCCATTGTTCTCAGTGTG 59 49521643 49521663 ATAGATGAGTTTGCCTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059498 ENSRNOT00000081068 2 1 1 61 7 2667254 2667275 AATACAGAGAAGATGAGCATGG 58 2667295 2667315 GGAACGTGTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000053952 ENSRNOT00000087915 2 1 1 60 19 56268675 56268695 TTGATACCTTAGTATCGCTGC 58 56268717 56268735 TGAAACCAAGCGAGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059562 ENSRNOT00000078558 3 1 1 62 7 8733936 8733954 AGTGTTGCAGTTGTGACTG 59 8733976 8733998 GTAGAAATAGCCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000031202 ENSRNOT00000078058 2 1 1 80 1 169499697 169500325 TACTGGGAGACTCAAATACAGAG 59 169499639 169499658 CTTGGAGTCCAGAAGCTCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052195 ENSRNOT00000085290 1 1 1 60 5 22316547 22316568 GAAGCAATACAGGGAAGATCAG 59 22316588 22316607 GCTTCATGAATTTCATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059462 ENSRNOT00000082232 3 1 1 60 19 9121359 9121378 TGTGAGTCAGTAGGTGACAG 59 9121399 9121419 ATAGGTCATAACACTGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051773 ENSRNOT00000081852 2 1 1 60 19 9716525 9716547 GATGTCTTACTTGTAGCTCAAGG 59 9716567 9716585 GAAGAGCCCAGTTCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058986 ENSRNOT00000089623 1 1 1 60 18 64463849 64463868 CGCGATTATTGCTAATTGGG 58 64463808 64463829 GAGCAGGATGTTCTCTTAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053366 ENSRNOT00000083050 3 1 1 163 1 84940249 84950058 TGAGCCCAGATTTGGAGTC 59 84940104 84940127 TCCTCTGAATGTACTATAGCTGTG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000053417 ENSRNOT00000080256 2 1 1 97 18 80170905 80170923 ATTCCGTGATCCAGAAGGT 58 80170826 80170845 CGATGTGTTCGGTATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.5 ENSRNOG00000053719 ENSRNOT00000086423 1 1 1 105 6 139013261 139102343 ATTTCCAAGCTGTGTCCTG 58 139013174 139013192 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA50 ENSRNOG00000051832 ENSRNOT00000088879 3 1 1 60 19 9718646 9718668 GATGTCTTACTTGTAGCTCAAGG 59 9718687 9718706 GAAGAGCCCAGTTCTTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051638 ENSRNOT00000086406 1 1 1 60 7 38426757 38426776 GAGTTGGAATAGGAGCTTGC 59 38426716 38426734 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056867 ENSRNOT00000088354 1 1 1 60 3 11384152 11384172 CATGAGGTTCCCAAATGTGAG 59 11384112 11384130 ATATAGGCTTCCACTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057255 ENSRNOT00000083040 3 1 1 60 18 7641050 7641069 TAGCGTGATCTGAGTGTGAC 60 7641009 7641030 GATTACATGAATCAACTCTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051990 ENSRNOT00000084772 3 1 1 64 4 150515713 150515732 CAATGAGGTTTATCCGAGGC 59 150515668 150515686 CCATAGACTGTGGCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.4 ENSRNOG00000060540 ENSRNOT00000087074 1 1 1 84 X 152886089 152886965 ATCAGCAGGATTAAGCCCA 59 152887277 152887296 CTGCACAAGATCTAGATGGG 58 Novel Rattus norvegicus 81 SNORA4 ENSRNOG00000052780 ENSRNOT00000088231 2 1 1 60 20 41767466 41767485 AACCTTAACCAATTCAGGCT 57 41767507 41767526 ATAGTCCACTGTGGAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058838 ENSRNOT00000090189 3 1 1 60 11 88403713 88403733 AGGCTATGTCTACATTCAAGC 58 88403752 88403773 TGTTAGGCTACTAAGCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn2 ENSRNOG00000059593 ENSRNOT00000078929 3 1 1 80 X 152928834 152928854 TCAAGAATCTTAAGCGTGTGG 59 152928415 152928795 CAGCTTCATCAATCATTTCCTG 58 Novel Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 1 1 1 84 9 110056181 110056204 GAATAGCTTTGGCTACTCCTC 58 110056117 110056135 CTCCAGCAAAGCCAAATCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057617.1 ENSRNOG00000057824 ENSRNOT00000039430 1 1 1 60 7 80457487 80457505 ACTGGTAACTTACGTGCCT 59 80457445 80457463 TCTCATCCACATTGACCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054030 ENSRNOT00000091872 2 1 1 60 11 85129456 85129474 CCACCTACAGGTAAAGCAG 58 85129414 85129433 CTTCTATGCCACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 3 1 1 62 19 12402888 12402906 AAGAAGTTAGACCGCAGGG 59 12402842 12402863 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060992 ENSRNOT00000089289 1 1 1 60 11 71434460 71434478 GAGAAGATTAGCATGGCCC 58 71434502 71434520 AATAGGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065031.1 ENSRNOG00000047682 ENSRNOT00000073216 3 1 1 85 6 105037150 105037168 GGAATCCTGTTCTTGTGGG 58 105037081 105037101 AATCACTATGGCTGCAGGT 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061081 ENSRNOT00000086788 1 1 1 60 4 91233162 91233182 ACTAGGAGTTGGAATAGGAGC 59 91233122 91233140 TTCTGCAATACCAGGTCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 3 1 1 60 7 110500095 110500118 CTATGTCACTTTCTCAACCATAGG 59 110500058 110500078 ATACTGAGCATTCACATTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000055237 ENSRNOT00000091857 3 1 1 65 7 114579375 114579393 AGCAGTTCTTTCCTGTTGG 58 114579422 114579440 CCAACGATGCCAGATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047799.1 ENSRNOG00000058066 ENSRNOT00000091281 2 1 1 62 5 48410507 48410525 GATGTCCAAGGTCAAGGTG 58 48410551 48410569 GGAAAGACAGCAAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 2 1 1 67 6 75606890 75606908 CTTATCCATTGCACTCCGG 58 75606841 75606859 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059046.1 ENSRNOG00000041521 ENSRNOT00000063274 3 1 1 60 4 2561383 2561401 TTCCTTCATAGCTGGGCAG 60 2561341 2561359 CCTCTTCCTCCCAATTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 3 1 2 80 17 14947092 14947112 GCAAAGAATGTGGAAGAGACC 60 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051910 ENSRNOT00000088797 1 1 1 60 9 49661578 49661598 TCACATATGAGTCAGAGGTGG 59 49661538 49661562 CAGAACACTTAGTATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058633.1 ENSRNOG00000046123 ENSRNOT00000075490 3 1 1 75 7 128762937 128762955 CTACGAAGCACACTGAGTG 58 128762880 128762898 CAGTGACACTTGGAGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000061928 ENSRNOT00000085727 2 1 1 80 8 76807873 76807892 AAGGTCTTGTGAAGGAAGTC 58 76807935 76813830 CATCCTGCATGGTACTGAG 58 Novel Rattus norvegicus 81 AC134651.1 ENSRNOG00000028529 ENSRNOT00000037907 3 1 1 61 2 205504436 205504454 ACACTACACAGGACCAGAC 59 205504480 205504498 CTGGCTGCTTCTAATGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063248.1 ENSRNOG00000053778 ENSRNOT00000080972 2 1 1 70 6 24200594 24200615 ACATACACTCACACTCATACAC 58 24200545 24200565 ACGAGTGTGAGTATAGGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051649 ENSRNOT00000083406 2 1 1 60 11 29660061 29660082 TATACAAGTAGCTGTGTTCCCA 59 29660102 29660121 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064983.1 ENSRNOG00000004582 ENSRNOT00000006043 1 1 1 60 6 103640002 103640021 CCTGCTGATAACTACCACCT 59 103640044 103640062 GCAAAGAGCTCACAACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053251 ENSRNOT00000091517 2 1 1 92 4 175972566 175972584 ATGAGGTTTATCCGAGGCA 59 175972492 175972510 TACCACTGAGCTAGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059060 ENSRNOT00000079289 1 1 1 60 11 80898274 80898292 GGGACAAAGAGGAGTGAGG 59 80898313 80898334 AATCCAGATGTCTACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 3 1 1 73 1 99888381 99888399 CTCCTTCTGACCAGTCTGC 60 99888436 99889262 CACTGATGCCAATGCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076396,ENSRNOT00000085052,ENSRNOT00000088581 2 3 6 60 10 74882537 74882556 TGCTGCCTGTACTTCATCTC 60 74882690 74882710 TGAATTCAACATCCAATGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013654.1 ENSRNOG00000061151 ENSRNOT00000072763 1 1 1 77 2 248579797 248579816 TCCCTGAAAGAATTCCAGGA 58 248579856 248579876 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058220 ENSRNOT00000091546 2 1 1 60 4 21904769 21904793 CAGTAAAGAGATTAGGATAGTCCCA 59 21904809 21904829 TGGAATGCTTCATGAGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063287.1 ENSRNOG00000047968 ENSRNOT00000075505 1 1 1 60 6 27107005 27107026 TTGAGTAGAAGACACCACATCC 60 27106966 27106984 GAGACCACCTAAACCAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060588.1 ENSRNOG00000027186 ENSRNOT00000035078 3 1 1 69 4 82432776 82432794 CAACAACCAGAGCAGACTG 59 82432725 82432744 TAAGAGTGAGGCACTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000083031 3 1 2 96 6 138535944 138535962 CTCCAAGAGCCAAGTTCTC 58 138535715 138535887 GAAGAGTCCATATCTCACTGTG 58 Novel Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 2 1 1 60 7 109411580 109411602 GTGAAGAAACCTCATCGTTACAG 60 109411619 109411640 GATAGCATCTGATTTCACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 1 3 4 151 1 134884919 134885451 GGTGTGCCATTCTGAAGAC 59 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059018 ENSRNOT00000087304 1 1 1 60 7 18486 18504 GATGAAGAACGCAGCTAGC 59 18525 18546 GTCCATTATCAATGTGTCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.3 ENSRNOG00000052878 ENSRNOT00000077690 1 1 1 83 9 27556404 27556422 ATCAAAGCACTGGTTGGTG 59 27556469 27556764 TCCAACATCTCTTGGCCTC 59 Novel Rattus norvegicus 81 AABR07005581.1 ENSRNOG00000057396 ENSRNOT00000084774 2 1 1 80 1 189009461 189009484 GAGATTTCACCTCACATGCG 59 189009400 189009419 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC114111.1 ENSRNOG00000052955 ENSRNOT00000090498 3 1 1 195 7 70452547 70452565 ACTGAATCGTAAATCCGCC 58 70452370 70452388 CTTGAGCAATCTTCTCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076064 2 1 2 62 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70510214 70510232 CTAGAAACTGGGACAGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076492,ENSRNOT00000076064 1 2 2 79 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70512262 70512282 AGAAATGATGAATCCTCCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA41 ENSRNOG00000058449 ENSRNOT00000091608 2 1 1 60 9 69955516 69955534 TCTGCAGCTGTCTTTATGG 58 69955556 69955576 GTGTAACAGTTTCTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0708.2 ENSRNOG00000051234 ENSRNOT00000076263 1 1 1 163 10 71158762 71159486 TTCTGGGTTTCAGGTCTGG 59 71158617 71158635 TCTAAGCAGAGCCTTTCCC 59 Novel Rattus norvegicus 81 Krt40 ENSRNOG00000013896 ENSRNOT00000018804 2 1 1 80 10 87457830 87457850 AGAGAATTCTAGACTTGCCGT 59 87457464 87457790 AGTTCGCTCTCATACTTTGAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052727 ENSRNOT00000078045 2 1 1 60 4 2660543 2660564 CTCACAATTCCATTTAGGTCCA 59 2660584 2660603 AGGAAGGTCACTATCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 1 1 1 60 10 34184396 34184416 GAGAAGATTAGCATTGTCCCT 58 34184356 34184374 AATATGGACCGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142458.1 ENSRNOG00000054641 ENSRNOT00000089872 3 1 1 78 8 79690914 79690933 AACCTATCTGAACACTGCAG 58 79690854 79690875 TGTTGAAGTAATATCCCTCTCC 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0706.2 ENSRNOG00000051046 ENSRNOT00000076677 2 1 1 110 10 70870698 70870856 CTAGGACTGACTGCCACAG 60 70870928 70870948 TCTGGAACGAAGTCTTCTCAG 60 Novel Rattus norvegicus 81 AC098022.1 ENSRNOG00000048170 ENSRNOT00000074095 1 1 1 89 7 20075981 20075999 AGAGGAAAGATGGAGCTGC 60 20076082 20076100 ATGCTTTATCCTTTCCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056499 ENSRNOT00000090344 3 1 1 60 4 38173033 38173051 AGGTGTGACTACAGCAGTC 59 38173074 38173093 ACTGAGAGTAGATTCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056357 ENSRNOT00000079611 1 1 1 60 10 25516048 25516066 ATACTTTCCCAGAAGGCGG 60 25516006 25516024 TGGATGATCCTCACTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058930.1 ENSRNOG00000056692 ENSRNOT00000079014 3 1 1 86 7 144368213 144368232 CTTCATGACACCTTCATGCC 59 144368142 144368164 CAAGGTTGTACTGCTGCAG 59 Novel Rattus norvegicus 81 AABR07009715.1 ENSRNOG00000031378 ENSRNOT00000049885 2 1 1 60 2 109317593 109317616 CCTGTATCTCATAAAGTACGATGG 59 109317633 109317653 ATCCTTGTTCAGCTCTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052147 ENSRNOT00000084444 1 1 1 60 10 66988255 66988275 ACTAACACTGCAACAGTACAC 59 66988215 66988233 TTGTCATGTCATCCTTGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.4 ENSRNOG00000053567 ENSRNOT00000081728 2 1 1 81 9 27678093 27678113 GAGACTTGTAAGGGCTGCA 60 27678030 27678050 ATCTGTGTCTTGCTTCAACAG 59 Novel Rattus norvegicus 81 AABR07067042.4 ENSRNOG00000053567 ENSRNOT00000081728 3 1 1 82 9 27678094 27678114 AGAGACTTGTAAGGGCTGC 59 27678030 27678050 ATCTGTGTCTTGCTTCAACAG 59 Novel Rattus norvegicus 81 AABR07067233.1 ENSRNOG00000059387 ENSRNOT00000081277 1 1 1 80 9 35925609 35925631 AGATTTCACCTCACATGCG 58 35925674 35925693 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055808 ENSRNOT00000083797 2 1 1 60 8 6876592 6876612 AAAGGTTACCTATGTGCTCAG 58 6876552 6876575 GTTAGGCTACTAAACATTCAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000073764,ENSRNOT00000064626 3 2 2 67 10 87819559 87819577 ACTTGCTGTGAAACAAGCT 58 87819608 87819626 CTGCAGCCAATGATCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.3 ENSRNOG00000058855 ENSRNOT00000044263 3 1 1 69 13 82267414 82267432 CTCTTTCTCCACATCCTCG 57 82267361 82267379 TCACACCAGTCAGAATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 1 1 1 67 2 209779347 209779366 TCAGAGATACGTTGCCACC 60 209779397 209779415 TATGAAGGGTAGCCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 1 1 1 70 9 43488601 43488619 TGAGTCCCTCTTCATCCTG 58 43488544 43488570 AAGAGGATTCCACAGATAACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07073173.1 ENSRNOG00000054734 ENSRNOT00000082841 1 1 1 60 5 152466385 152466405 GGAGAATCTGAAGAGGACCTG 60 152467766 152467784 TCTCAGACTCCACCAAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 2 1 1 125 1 198576786 198577167 ATTAAGCTGGTCCCAACTCC 60 198576680 198576698 ATCGTCATCGTATTCGGCA 59 Novel InUTR Rattus norvegicus 81 AABR07037436.1 ENSRNOG00000052565 ENSRNOT00000083810 2 1 1 60 X 20734042 20734064 TAGACCTCAGTAACTTGACACTC 59 20734004 20734022 GTGTCTTGCACAAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052830 ENSRNOT00000088511 2 1 1 60 8 118440378 118440399 GACCTAGGAGTTGGAATAGGAG 59 118440339 118440359 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058998 ENSRNOT00000084716 1 1 1 60 8 1160635 1160654 GCAGTATCGTAGCCAATGAG 59 1160594 1160613 CCAAGCCATTCCAATTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059193 ENSRNOT00000091547 1 1 1 60 13 64233791 64233809 ACAAGCTCTCAAGGTCCAC 60 64233830 64233851 CCCTAAATTCCTGATGTTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011956.1 ENSRNOG00000060006 ENSRNOT00000091605 2 1 1 122 2 177829220 177829239 CCAAACAAGTGAAGGAACTG 57 177829324 177829343 ATGACTCCTGTCTCTTCCC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061033 ENSRNOT00000083313 3 1 1 60 8 67919710 67919728 CCTGTGACTTCTCCAAAGG 58 67919752 67919770 AGCATAGACCCAATCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041247.1 ENSRNOG00000030645 ENSRNOT00000041969 1 1 1 60 X 124147549 124147570 AAGCATTCATGTTCTTGAGTGG 60 124147590 124147609 AACAATCTGGTTGGATGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.7 ENSRNOG00000053720 ENSRNOT00000089726 2 1 1 60 20 4983366 4983385 TCGTTGGTGATAAACACCTG 58 4983325 4983343 AGTCTGATAACTGCCGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054262.2 ENSRNOG00000056526 ENSRNOT00000087754 2 1 1 79 3 145648645 145648663 AATATCTTCAGTGCTGGGC 58 145648708 145648726 ACCACAGAACCAACAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 2 2 3 61 20 4871819 4871840 TCATCTCATTGTCTAACAAGCC 59 4871532 4871797 TTGAGTAGCAGCTAAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 3 2 3 79 20 4871834 4871858 GTGACTAGAATGTCATGATCATCTC 59 4871532 4871797 TTGAGTAGCAGCTAAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037878.1 ENSRNOG00000032797 ENSRNOT00000047875 2 1 1 60 X 34714603 34714621 CAACATTTGGGCTCATCCT 58 34714561 34714580 AACTCCTTTCCGAAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000051651 ENSRNOT00000081581 3 1 1 60 8 109746320 109746339 CATCTCAGAAGCTAAGCAGG 58 109746360 109746380 AATATGTGGTGCTTTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007997.1 ENSRNOG00000061053 ENSRNOT00000084896 1 1 1 81 2 38217685 38217707 TCACCTCACACCAGAATGG 59 38217751 38217770 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056584 ENSRNOT00000084606 1 1 1 61 8 102277729 102277752 GGATACCCTATCTACTGAAATTGG 58 102277772 102277790 CATCCTTTCTCAGGGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024757.1 ENSRNOG00000050966 ENSRNOT00000072221 2 1 1 80 16 14864550 14864573 GAGATTTCACCTCACATGCG 59 14864489 14864508 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052284 ENSRNOT00000087562 2 1 1 60 8 73362420 73362441 AACGATACAGAGAAGGTTAGCA 59 73362381 73362399 TGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059364 ENSRNOT00000088486 1 1 1 60 8 79444909 79444929 GGAACGATACAGAGAAGATGC 59 79444951 79444969 AGCTTCAGGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052988 ENSRNOT00000092206 3 1 1 61 8 95657794 95657812 GTGTCAGTAGGTGGCAGAG 60 95657751 95657770 TGTTCGTAGATCAGAACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055321 ENSRNOT00000088929 1 1 1 60 8 75832514 75832532 AAAGGAGCACTCGTAAGCA 59 75832556 75832574 AAGCACCTACCTAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000054710 ENSRNOT00000086582 1 1 1 60 8 72701701 72701724 GTGCGATAGAAATTCACTATCTGG 60 72701664 72701684 CAGGTTTAACATGCACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055232 ENSRNOT00000087185 2 1 1 60 8 41669852 41669871 GTGTGGTATATGCTTGCCTC 59 41669893 41669912 GGGCCGTAATGTATCATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094221.1 ENSRNOG00000054338 ENSRNOT00000079863 1 1 1 81 20 1045445 1045467 TCACCTCACACCAGAATGG 59 1045382 1045401 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 2 1 1 72 20 628726 628751 CTCTGCTATACCACTTCTACCC 60 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054887.1 ENSRNOG00000061217 ENSRNOT00000090602 2 1 1 80 3 173166289 173166311 TGAATCCTTCTCAGAAGAGTCTC 59 173166028 173166251 CCCAAATGTAGCCTATAGCAC 59 Novel Rattus norvegicus 81 AABR07026596.2 ENSRNOG00000055140 ENSRNOT00000088012 3 1 1 60 16 85305670 85305688 TCTTCTCCTTTCTCAGGGC 59 85305710 85305730 ATAAGTCTGCAAAGAACCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053667.1 ENSRNOG00000057409 ENSRNOT00000086998 2 1 1 85 3 119372669 119372687 CACTGAGCCATCTTTCCAG 58 119372602 119372621 CTACACTCTGAACCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056303 ENSRNOT00000079927 1 1 1 60 3 123381618 123381639 ATACAGAGAAGATTAGCATGGC 58 123381659 123381678 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056609 ENSRNOT00000079958 3 1 1 60 3 177005381 177005403 TACTCTAGGTATGTTGACTCCAC 59 177005421 177005441 ACAACTATTCAGGCAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 2 1 1 60 3 153521761 153521781 CAGTACCATACAGTACAGTGC 58 153521798 153521821 GTACTGTACTGTATTGTACTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045809 ENSRNOT00000071208 1 1 1 60 16 4974801 4974822 CCACATTACCCTGAACATATCC 59 4974762 4974780 AGGCCTAACCAAGCTTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000051755 ENSRNOT00000079071 3 1 1 60 16 62218598 62218616 AAAGTGAGGCTGATTGAGC 58 62218639 62218658 GGAAGAGAACATGCGATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125757.1 ENSRNOG00000058467 ENSRNOT00000087795 1 1 1 78 5 2888557 2888575 TTGACCTTTCACCACAGCA 60 2888307 2888325 ACAAGTGCTGCCAAATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031272.1 ENSRNOG00000051767 ENSRNOT00000078083 3 1 1 93 18 6828616 6829558 ATGGATGAACATTCGACTTCTG 59 6828544 6828564 TATCCAAACCAAGGTCCTCTG 60 Novel Rattus norvegicus 81 AABR07046731.1 ENSRNOG00000055458 ENSRNOT00000087006 1 1 1 134 5 3899329 3899347 AATAACCCTCTGAGTGCGG 60 3897713 3897731 CTTGAGTAGTCGGAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000080427 2 1 2 80 14 36590951 36590970 CAATGCCCATATTGTCCCAG 59 36590449 36590908 TGGCAGATTCTTGACCCAG 60 Novel Rattus norvegicus 81 AABR07062670.1 ENSRNOG00000053605 ENSRNOT00000077476 1 1 1 80 6 2527319 2533741 CAAAGAGCAGCTCAACTCC 59 2523897 2523915 GTGTCCTTCTTGAACCTGC 59 Novel Rattus norvegicus 81 AABR07062670.1 ENSRNOG00000053605 ENSRNOT00000077476 3 1 1 81 6 2527318 2533740 AAAGAGCAGCTCAACTCCT 59 2523895 2523914 CTGTGTCCTTCTTGAACCTG 59 Novel Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 2 2 2 80 1 1441915 1441935 CAATCTTTCTCTGAGTCTGGG 58 1440628 1441878 CTAAAGGAGTGTACATCTTCTAGC 59 Novel Rattus norvegicus 81 AABR07046819.1 ENSRNOG00000053781 ENSRNOT00000080473 1 1 1 80 5 8047829 8047849 ACTAAGAAAGATGCATGTGCC 59 8043910 8047791 GAGACAGTTGTCATTTGTACTCC 60 Novel Rattus norvegicus 81 AABR07031526.1 ENSRNOG00000053150 ENSRNOT00000083801 1 1 1 80 18 17876100 17878481 TTCCTTCTCCTGGTTCTGG 59 17876038 17876057 TTCGGCCTTAAGATGAGAGG 59 Novel Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 3 1 1 76 5 17113874 17123496 TACATCGCAGTGACAAGTG 58 17113816 17113834 ACAATACTTGGCACACCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060593.2 ENSRNOG00000055304 ENSRNOT00000088685 3 1 1 94 4 83199052 83199070 TATTCAGCCTAAGCTGGCC 60 83199126 83210516 AATTTCCTTGCTGTTCACCTG 60 Novel Rattus norvegicus 81 AABR07029768.2 ENSRNOG00000055459 ENSRNOT00000085491 2 1 1 85 10 49335102 49335121 ATGAACCGGAATGAACAGGA 60 49333875 49335054 TGTGACCTGATGTCACCAC 60 Novel Rattus norvegicus 81 AABR07060769.1 ENSRNOG00000052931 ENSRNOT00000088910 1 1 1 81 4 93013087 93013106 GAGCTTGTCCTGTATCAGGA 59 93013149 93033357 AACTCCACCCTTCTTGATGG 60 Novel Rattus norvegicus 81 AABR07029895.1 ENSRNOG00000055441 ENSRNOT00000090175 1 1 1 60 10 57952034 57952053 CTCGCGTTAAAGTCCAAGTC 59 57929747 57929766 TTAAATCATCTCTGCCGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047212.2 ENSRNOG00000061754 ENSRNOT00000077918 1 1 1 80 5 24223107 24225345 ACCAGCAATTAATCAGATGCG 60 24223047 24223065 CAGTGTCTGCTACTGTCCA 59 Novel Rattus norvegicus 81 AABR07047213.1 ENSRNOG00000055469 ENSRNOT00000079997 3 1 1 75 5 24280104 24280122 CTACCGCTAACTTGTCTGC 58 24275454 24275473 TCACCCATTGAAGTAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047256.1 ENSRNOG00000059459 ENSRNOT00000079809 3 1 1 81 5 25339605 25340939 AGTACAGCCAAGATCCCAC 59 25340981 25341002 CTGGTACTAACTTCTGTCATGC 59 Novel Rattus norvegicus 81 AABR07047309.1 ENSRNOG00000061158 ENSRNOT00000086860 2 1 1 105 5 27673678 27690325 TTGTCAAGGCTTCTCTTCAG 58 27673592 27673611 TTACCTGAGTCTGGGAAGTG 59 Novel Rattus norvegicus 81 AABR07061237.1 ENSRNOG00000055832 ENSRNOT00000088100 2 1 1 81 4 111238464 111238484 GGAAATGGGAACGAGATACCT 60 111238521 111242919 GGAATATGTTTCATAGTAGCCACTC 60 Novel Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000085786 1 1 2 81 1 14938553 14949524 GAATTCAAGCATGCAATGGT 58 14949568 14949586 ACACGTAGGTTGAGATCCA 58 Novel Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 2 1 1 61 10 79210687 79210706 ATCAACTTTGACGTTTGCCA 59 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048046.1 ENSRNOG00000060050 ENSRNOT00000078601 3 1 1 62 5 58717988 58718006 GGTGCGTTAAGATGGAGGT 60 58718032 58721874 CTCAGAGAAACACCACCGT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07015994.1 ENSRNOG00000051567 ENSRNOT00000079143 3 1 1 80 14 89947707 89947725 TGCCAATCACTATGAGCCT 59 89898023 89947665 AGGATTGACTTGTCTGTCTCC 60 Novel Rattus norvegicus 81 AABR07061382.2 ENSRNOG00000054709 ENSRNOT00000091643 3 1 1 109 4 120130204 120132212 TGAGAGCAGGAGAAGATGC 59 120130113 120130131 CATTGAACCATTCGGTGGC 60 Novel Rattus norvegicus 81 AABR07048322.1 ENSRNOG00000059020 ENSRNOT00000081402 3 1 1 81 5 73297556 73326542 CAGACAATGGAGATGCCTG 58 73297493 73297513 CACCTGATCTCTTTCTTTGCA 59 Novel Rattus norvegicus 81 AABR07016310.2 ENSRNOG00000053463 ENSRNOT00000077759 2 1 1 60 14 96538000 96538020 TCCTCAGAGAAACAAGAAACC 58 96534411 96534430 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016310.2 ENSRNOG00000053463 ENSRNOT00000077759 3 1 1 60 14 96537999 96538020 TCCTCAGAGAAACAAGAAACCA 60 96534411 96534430 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 1 1 1 64 4 121701599 121703142 CTCAATACCAGTGTGCAGG 58 121703170 121703188 AGACATGTCAGCTGATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000670.1 ENSRNOG00000060376 ENSRNOT00000089045 3 1 1 89 1 22757723 22757743 CGGTTCTGAATGAACATTTCG 58 22757471 22757672 TTGTGTATTTGCTCTCGGG 58 Novel Rattus norvegicus 81 AABR07030566.2 ENSRNOG00000053962 ENSRNOT00000081928 2 1 1 80 10 93172836 93181091 GAAAGCCATTTCAGAGAATGTC 58 93181131 93181150 TCTTTCTTGGTCAGCTTGAC 58 Novel Rattus norvegicus 81 AABR07016572.1 ENSRNOG00000061005 ENSRNOT00000091905 1 1 1 80 14 104709202 104709221 GGTGTCACAAACCTTCAAGG 59 104709264 104714090 ATCATCACAGGACCTGCAC 60 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000080878 3 1 2 81 10 93229720 93232204 TTCCAGCTGACTCTTCTGG 59 93232247 93232267 GAAATGTCTGGCTTACCAGTC 59 Novel Rattus norvegicus 81 AABR07061807.2 ENSRNOG00000052522 ENSRNOT00000077582 2 1 1 102 4 146300251 146300270 TTCCATAGGAAGACACAGCA 59 146293042 146300090 GGGAAGAGAATCTGTTAAGATACC 59 Novel Rattus norvegicus 81 AABR07049032.1 ENSRNOG00000054520 ENSRNOT00000083921 1 1 1 62 5 100753050 100753068 GATTCTTGAGGTCAAGCGA 58 100757606 100757624 CAATGGAGCTGGTTGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.4 ENSRNOG00000052948 ENSRNOT00000079931 3 1 1 135 5 107289760 107289778 TTTCCTTTGCTGGAACCTC 58 107289877 107291658 CAGAAGTCCAGAGGGAGAG 59 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000083213 3 1 2 60 10 99706353 99706371 CTCCCGTATTAACATGGGC 58 99668374 99668392 ATGACTTCTGAGTCCAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128967.2 ENSRNOG00000054781 ENSRNOT00000091730 2 1 1 87 4 156963354 156963374 CCTGATGGTTCATCAATGCAG 60 156965848 156965866 CTCTTCCTGCAGGACTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030706.2 ENSRNOG00000059380 ENSRNOT00000082818 2 1 1 91 10 100912504 100913756 TATCCGAGTCCTCACAGGA 59 100912431 100912450 GATGGTTTGAGGGCTAACAG 59 Novel Rattus norvegicus 81 AABR07049288.1 ENSRNOG00000054667 ENSRNOT00000087340 1 1 1 124 5 114037379 114037397 GTTTCCATTGCTTCCGGAC 60 114114161 114114179 CCACTTCTTTGGTCTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030714.1 ENSRNOG00000054938 ENSRNOT00000077545 3 1 1 84 10 101113035 101113053 TATCAGCCCAACAGGAGAG 59 101113095 101123582 GATCGAGGAGAAATAAGATACAGAG 59 Novel Rattus norvegicus 81 AABR07049292.1 ENSRNOG00000058472 ENSRNOT00000088984 3 1 1 81 5 114338447 114338465 CCTGTTAGAGAATGAGCCC 57 114205282 114338405 TGTAGATTTCCTTCTATCTGCG 58 Novel Rattus norvegicus 81 AABR07062069.2 ENSRNOG00000061632 ENSRNOT00000087235 1 1 1 80 4 160343978 160343996 GTCCATCCCAGGAGAAGAC 59 160341908 160343935 TCCTTCTGTGATCTGTAGCC 59 Novel Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 3 1 1 64 4 162999665 162999683 AGAACAGCTGTACAGAAGC 58 162999710 163008805 TCTTTGTTTGTCCGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030910.1 ENSRNOG00000058129 ENSRNOT00000082454 1 1 1 81 10 108668315 108668334 AAACAAGTGCACTGTAGCAG 59 108667852 108668271 TGGAGGTGCTCACATTCTG 60 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 1 1 1 90 10 108728498 108728516 TCTACACCCAACAAGCTGG 60 108726672 108728444 AATTCTCCACCAGCAGACC 60 Novel Rattus norvegicus 81 AABR07017266.1 ENSRNOG00000051924 ENSRNOT00000080450 3 1 1 80 15 20232176 20232196 GAGAAACGTTTCACAAGACCT 59 20232238 20232986 AGGTAAGGCCGCAATACTC 60 Novel Rattus norvegicus 81 AABR07062350.1 ENSRNOG00000053476 ENSRNOT00000081475 1 1 1 110 4 170476688 170476706 GATTCCTCAGTAGCCACCC 60 170473542 170473560 TCAGTGGTTCAGGAAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049669.1 ENSRNOG00000055693 ENSRNOT00000092111 2 1 1 74 5 132436991 132437012 GCAACATTATGGCTATACAGAC 57 132438459 132438479 GCTCTTTCATCTCCATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045658.1 ENSRNOG00000055472 ENSRNOT00000086208 1 1 1 80 20 55724651 55729674 AGGAGATCATTAGCTGATGAGTG 60 55729708 55729732 CCATGATACATCAATAGGAATCTGG 59 Novel Rattus norvegicus 81 AABR07017513.1 ENSRNOG00000060872 ENSRNOT00000080915 2 1 1 106 15 24879551 24879570 AGACTGAACTTGAACTGGGA 59 24879637 24888361 GGTAACCTATTCCAGGGTCTC 59 Novel Rattus norvegicus 81 AABR07031612.1 ENSRNOG00000051417 ENSRNOT00000091979 2 1 1 80 18 22405699 22405717 TGATGTAGCAACACTGCCA 60 22405235 22405658 ATGAAGCACCTGAGTTTAACAG 59 Novel Rattus norvegicus 81 AABR07017770.2 ENSRNOG00000061293 ENSRNOT00000089143 2 1 1 91 15 30883560 30883802 TTTGTCTGGATGTAATGTGGC 59 30883855 30883873 ATGAACACTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07031674.5 ENSRNOG00000061675 ENSRNOT00000080852 1 1 1 80 18 25249783 25249802 CACAGAACTCTCACAAAGCA 59 25249632 25249740 TTGTCTTGAGCAAGATGCC 59 Novel Rattus norvegicus 81 AABR07031674.5 ENSRNOG00000061675 ENSRNOT00000080852 2 1 1 80 18 25249784 25249803 CCACAGAACTCTCACAAAGC 59 25249633 25249741 TGTCTTGAGCAAGATGCCA 60 Novel Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 3 1 1 63 4 182329578 182329598 GGAGATAGAGAAGTGGGAAGG 59 182329623 182330269 TGCCTTCTGTCTTCTGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017815.1 ENSRNOG00000060777 ENSRNOT00000081380 1 1 1 83 15 31311443 31319303 AATGTTTGGAGGAAGCAATGG 60 31319348 31319366 TTCACAGTCAGAGAAGCCC 59 Novel Rattus norvegicus 81 AABR07017815.1 ENSRNOG00000060777 ENSRNOT00000081380 2 1 1 84 15 31311442 31319303 TAATGTTTGGAGGAAGCAATGG 59 31319348 31319366 TTCACAGTCAGAGAAGCCC 59 Novel Rattus norvegicus 81 AC114389.2 ENSRNOG00000056441 ENSRNOT00000087503 2 1 1 85 1 48267904 48267923 ACAAATTCCATGTGAGTGCC 59 48266295 48267856 GTTTCAGAAGCTGCCTTGG 60 Novel Rattus norvegicus 81 AABR07001518.1 ENSRNOG00000055141 ENSRNOT00000081808 1 1 1 80 1 49132535 49133881 TCAGAAACACAGGATGCAC 58 49133922 49133943 GATTTCTGTGACTTTGCAAACC 59 Novel Rattus norvegicus 81 AABR07031759.1 ENSRNOG00000059937 ENSRNOT00000079229 1 1 1 60 18 32992379 32997310 GCCATAAAGATACAGCTTACAC 57 32997331 32997349 TTTGCTCAGACTGCTAAGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07018050.1 ENSRNOG00000054986 ENSRNOT00000085916 1 1 1 80 15 37345780 37345801 CATCAAGACAACTTATGGTCCA 59 37343450 37345740 TTGCATGGTCTGAATCTGAG 58 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 3 1 1 81 5 157135474 157135493 GTAAACGGATGCATGATGCA 59 157135534 157136078 CTTCTTGGAGCTTCCATTTCTC 59 Novel Rattus norvegicus 81 AABR07018262.2 ENSRNOG00000054573 ENSRNOT00000085802 2 1 1 80 15 49552958 49552976 GAAGGTGGGTCAAAGTACG 58 49547656 49552915 CTGCATTAATGCACACTTGG 58 Novel Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 1 1 1 82 5 161085467 161087498 CAGAACAGATGCGTCTTTCC 59 161085404 161085425 GTCTGAACTCAGGAATTGACAC 59 Novel Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 3 1 1 85 5 161085472 161087502 AATGCAGAACAGATGCGTC 59 161085405 161085425 TCTGAACTCAGGAATTGACAC 58 Novel Rattus norvegicus 81 AABR07063642.1 ENSRNOG00000059067 ENSRNOT00000088515 1 1 1 97 6 39128154 39128172 ATGTCTGGGAATGGTTTGG 58 39128232 39134838 CAAAGGTACCTGGCTTATCC 58 Novel Rattus norvegicus 81 AABR07063649.3 ENSRNOG00000058529 ENSRNOT00000083922 3 1 1 82 6 39504686 39504704 CACACTGAAGCAACTGACC 59 39504750 39515326 TGCTGATAAGCTTGTGGTG 58 Novel Rattus norvegicus 81 AABR07002010.1 ENSRNOG00000056327 ENSRNOT00000087034 1 1 1 81 1 64818706 64829986 GGAGTAAAGTAAGGGATGTTCTG 59 64818647 64818667 TCAGAGGGATAACTGAATCGT 58 Novel Rattus norvegicus 81 AC094126.1 ENSRNOG00000055715 ENSRNOT00000087064 2 1 1 84 5 164883512 164883530 TGGAACCAAGACCTGTCAC 60 164883021 164883464 CAGGGTCTCTTCAGCTCTG 60 Novel Rattus norvegicus 81 AABR07063724.1 ENSRNOG00000057498 ENSRNOT00000090534 2 1 1 207 6 44009277 44009295 CCCAAACTTGCGGAAATCC 60 44007981 44009107 ATTAAAGGAGTCAGCAGCCT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07063724.1 ENSRNOG00000057498 ENSRNOT00000090534 3 1 1 208 6 44009277 44009295 CCCAAACTTGCGGAAATCC 60 44007980 44009106 AATTAAAGGAGTCAGCAGCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07063740.1 ENSRNOG00000052618 ENSRNOT00000077838 2 1 1 80 6 44586752 44614729 TTTACAAGTGGCACCTTTCAC 59 44614770 44614789 GAATGAGTCAGGATTGCCAC 59 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 1 1 1 60 6 45023557 45024524 GGATTTGTGAGTCACTATCCA 58 45024543 45024564 GAGTAACTGCTCTCAATTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032417.1 ENSRNOG00000061266 ENSRNOT00000083596 2 1 1 80 18 64654741 64658478 ATCTTCAAGCTGCAGAGGA 59 64658520 64658540 TGCCTCCTTGTTATTGATCAC 58 Novel Rattus norvegicus 81 AABR07032417.1 ENSRNOG00000061266 ENSRNOT00000083596 3 1 1 80 18 64654742 64658479 TCTTCAAGCTGCAGAGGAG 59 64658520 64658541 TTGCCTCCTTGTTATTGATCAC 59 Novel Rattus norvegicus 81 AABR07032422.1 ENSRNOG00000055882 ENSRNOT00000077969 2 1 1 60 18 64792694 64794071 AACTGGTCCTTGAATGCCT 59 64792652 64792672 AGGAGAAGCAGTTAGAATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07002674.1 ENSRNOG00000059266 ENSRNOT00000090105 1 1 1 93 1 80191600 80191618 GTTTGGTATCAGGCAAGCG 60 80190672 80191545 CATCTCACCTCTTCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07063746.1 ENSRNOG00000054844 ENSRNOT00000081221 2 1 1 81 6 45649321 45649886 TCATCTGCTCCAAATCTACAC 58 45649929 45649947 GTGGTGCTCTTGACTTCTG 59 Novel Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 2 1 1 60 15 72057973 72078623 TCAGTTATATCAGCCAGTCAC 57 72078643 72078663 TATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AC134759.1 ENSRNOG00000057198 ENSRNOT00000088115 2 1 1 75 1 82371650 82371668 CTTCAGCTGACCTGTTCTC 58 82372846 82372864 TTGTCGTCTTCTTTCTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019019.1 ENSRNOG00000057930 ENSRNOT00000089703 3 1 1 135 15 83942054 83945355 TTGTGGAGTGAAGCTATGC 58 83941937 83941958 ACTTAGGTAGTCTCTACGTGAC 59 Novel Rattus norvegicus 81 AC111292.2 ENSRNOG00000055447 ENSRNOT00000085531 2 1 1 188 3 4007731 4012303 GGAACACAGAAGTCCTTGC 59 4012455 4012473 TCCAACTTCAGGGTGTCTG 59 Novel Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613,ENSRNOT00000088122 3 2 2 80 15 87487128 87491038 GTTACCAGATTGCCACACTG 59 87487067 87487087 TCTCTTGAAGCAGCTATCTGG 60 Novel Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 1 2 2 80 3 4734834 4735902 GATCATGAGGAAGGTGACCA 59 4735945 4735963 GTCCTCTTCCTTACTCGCT 59 Novel Rattus norvegicus 81 AABR07032640.2 ENSRNOG00000061667 ENSRNOT00000079857 1 1 1 81 18 75694844 75694862 TAAGGAGGCAAGCAGTGAG 59 75693408 75694800 CGAATCTTGAGCCTTCTTCC 59 Novel Rattus norvegicus 81 AABR07051400.2 ENSRNOG00000059495 ENSRNOT00000085689 1 1 1 80 3 9333285 9333680 ATACTGGAGCCAATGGACC 59 9333223 9333242 AAGTGTTGAAACTGCAGGTC 59 Novel Rattus norvegicus 81 AABR07072853.2 ENSRNOG00000056129 ENSRNOT00000078431 1 1 1 110 3 9945846 9945865 GATCGTCTCAACACGTTTGG 60 9942984 9945773 ACCATTGCATTTGCACCTG 60 Novel Rattus norvegicus 81 AABR07051515.1 ENSRNOG00000058364 ENSRNOT00000080459 1 1 1 80 3 14660158 14700283 TGCAGATCAGGAGTTGGAG 59 14660096 14660114 GAGTTCTATGGAGCTCCCG 59 Novel Rattus norvegicus 81 AABR07019437.5 ENSRNOG00000057052 ENSRNOT00000087221 2 1 1 85 15 105481063 105481871 CTTCAATGTGTATGCTCCGT 58 105481916 105481937 GATCAACAGCTTAACGATTTCC 58 Novel Rattus norvegicus 81 AABR07064724.3 ENSRNOG00000057000 ENSRNOT00000077355 3 1 1 85 6 91688845 91688864 TCATGTTGATGTACGACGAC 58 91684651 91688799 CGAAGTGTGAACCTTCATCTC 59 Novel Rattus norvegicus 81 AABR07032843.1 ENSRNOG00000057359 ENSRNOT00000088232 2 1 1 91 18 85642565 85643899 AAAGGACAGGGAAATATGCA 57 85643953 85643971 TAGAGTCCAGTCCAGAGTG 57 Novel Rattus norvegicus 81 AABR07019442.2 ENSRNOG00000059922 ENSRNOT00000090685 3 1 1 80 15 105942205 105942227 TCAGGACAGAATTAGGAAGATGG 60 105942267 105942936 GGGAAGGAGTGTGACTCTG 59 Novel Rattus norvegicus 81 AABR07071904.2 ENSRNOG00000061879 ENSRNOT00000089191 3 1 1 80 1 94834266 94834286 ATCTTCAAGTTGGAGCATGGA 60 94834325 94836521 ATACATGCTCAGATCTGGAAGG 60 Novel Rattus norvegicus 81 AABR07033283.1 ENSRNOG00000059856 ENSRNOT00000085016 1 1 1 79 11 15377893 15377911 AGCTAAACACTCTGGACGG 59 15375947 15375965 CATAACGGTGTTCGAACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 1 1 1 60 13 24516795 24520522 CCATCTCCAGTTAATTCAAGGT 58 24516756 24516776 AGGATTCCATTCATCTTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051813.1 ENSRNOG00000053236 ENSRNOT00000088694 1 1 1 80 3 22780928 22782957 GAATCCTACCTGGCCAGAC 60 22783001 22783019 GTAAGAGGCTGGCTCTGTC 60 Novel Rattus norvegicus 81 AABR07065049.2 ENSRNOG00000053831 ENSRNOT00000084251 3 1 1 61 6 105833824 105833843 ATCGAAGGATTAGAACCAGC 58 105823696 105823714 CTCCTCCTGGTGTAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC094784.1 ENSRNOG00000059931 ENSRNOT00000084426 2 1 1 122 11 30977552 30978838 AGTCTTCGGTCTACAGAGAC 58 30978921 30978941 GGTCACAGTCTGTCTTTATCC 58 Novel Rattus norvegicus 81 AABR07051957.1 ENSRNOG00000053695 ENSRNOT00000078384 3 1 1 80 3 30280789 30283064 AAAGAAGCCAGGTTTGGGT 60 30280727 30280745 CCCAGTTTGGTTGACAGTG 59 Novel Rattus norvegicus 81 AABR07051982.2 ENSRNOG00000060164 ENSRNOT00000078770 1 1 1 142 3 30894415 30894436 ACTCCCAATCTTAGAAGAGGTG 59 30892835 30892853 CAACCTGGAAGGACTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.2 ENSRNOG00000061785 ENSRNOT00000077712 3 1 1 98 6 110909899 110913919 GAAATCTGGTTGAACTACTCAGC 60 110909823 110909841 GGGTCAAGACTGGTACAGG 59 Novel Rattus norvegicus 81 AABR07003349.1 ENSRNOG00000055821 ENSRNOT00000086165 2 1 1 65 1 106862818 106862836 GTCAAACAACAGTCCCTGG 59 106861357 106862789 CAGCTCCCTTGTAAATGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065190.1 ENSRNOG00000054202 ENSRNOT00000091539 3 1 1 62 6 114631026 114631044 CAGCATATTCCATGCCCTG 59 114599047 114599070 TGTCATGAGTATATTCTGGGTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 3 1 1 80 13 50809395 50809413 TATCCTCTCCCTGGAAGGA 58 50809456 50810027 GGTGGAATTCTACCCTTCCT 59 Novel Rattus norvegicus 81 AABR07052085.2 ENSRNOG00000052827 ENSRNOT00000080064 3 1 1 80 3 35805050 35808097 TTGCTATAAAGGAGAAGACCCA 59 35808136 35808156 TTGCCAGTAGTCTATAGTGGT 58 Novel Rattus norvegicus 81 AABR07003354.1 ENSRNOG00000052081 ENSRNOT00000089175 1 1 1 80 1 107149576 107149596 AAGAAGAACACAAGGCATGAC 59 107144614 107149535 TTCATTCGGTGCTTTGAAGG 59 Novel Rattus norvegicus 81 AABR07052195.1 ENSRNOG00000051723 ENSRNOT00000084104 1 1 1 93 3 41634433 41642436 GGTTAAGTGGAGAGCTGGA 59 41634358 41634382 CCATCTCTTTATCTCATATTCGTCC 59 Novel Rattus norvegicus 81 AABR07021213.1 ENSRNOG00000055995 ENSRNOT00000086787 2 1 1 84 13 60825108 60825127 GCCAGTGATATGGAGTCTCC 60 60824903 60825062 CCTTGTATTCGATGCCACTG 59 Novel Rattus norvegicus 81 AABR07065274.1 ENSRNOG00000060324 ENSRNOT00000081529 3 1 1 81 6 118508322 118518755 ATGAGAAAGTGGCTTCATTCTC 59 118518794 118518815 CATGTAGTGAGTACAAGCTCCT 60 Novel Rattus norvegicus 81 AABR07052388.1 ENSRNOG00000054733 ENSRNOT00000077132 2 1 1 80 3 50657397 50657416 GACAATTGCAAGATGCAGAC 58 50657456 50657758 ACATTAATTCCGCAGATCTTCC 59 Novel Rattus norvegicus 81 AC113858.1 ENSRNOG00000053686 ENSRNOT00000078479 1 1 1 61 13 68937803 68937821 ATGCTCACCAGACCTTCTG 59 68937846 68942324 GTGGAGACCTGAGAAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003449.1 ENSRNOG00000051655 ENSRNOT00000089769 2 1 1 60 1 110026784 110028035 TCTCCATCAGTTGGAATGTCC 60 110028055 110028075 AAATCTGATTGGCAAGAGCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07021411.2 ENSRNOG00000052913 ENSRNOT00000083498 1 1 1 83 13 70840678 70840696 AACACTGAGACAAAGTGCT 57 70840741 70841176 CTTCTTACCCTTGTTGAAAGC 58 Novel Rattus norvegicus 81 AABR07021419.1 ENSRNOG00000052817 ENSRNOT00000088938 2 1 1 70 13 71145690 71145708 TCCCAATGTCTACTGTGCC 59 71147599 71147617 GAGTCAAGTCCCTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052458.1 ENSRNOG00000058327 ENSRNOT00000092139 2 1 1 84 3 55021847 55021871 CTTCAAGATATGTGGAATCTTGGAG 60 55013346 55021807 CCATTGGTACCTTCTTCATGG 59 Novel Rattus norvegicus 81 AABR07065343.1 ENSRNOG00000058233 ENSRNOT00000087375 3 1 1 101 6 121991280 121991298 CAAAGATGCAGAAGCTTGG 57 121991363 122000767 CTTCTGATCTGCACCTTGG 58 Novel Rattus norvegicus 81 AABR07052521.1 ENSRNOG00000052533 ENSRNOT00000088745 1 1 1 84 3 59272198 59272216 CTTGTGAGGAGAGTGGAGG 59 59268830 59272152 GGGTACTTGACCTGAATTGAG 59 Novel Rattus norvegicus 81 AABR07021494.1 ENSRNOG00000051559 ENSRNOT00000089910 2 1 1 80 13 74763222 74763242 GCTCAACATTTATGCTCACCT 59 74763283 74764029 GATTCCAAAGGAGTGCTCTG 59 Novel Rattus norvegicus 81 AABR07021717.1 ENSRNOG00000057638 ENSRNOT00000090606 3 1 1 95 13 87438520 87442513 CAGGATACAGACTGAGGCT 58 87442572 87442590 ACCACCAGTCCTTGATCTG 59 Novel Rattus norvegicus 81 AABR07052589.1 ENSRNOG00000054867 ENSRNOT00000081267 2 1 1 93 3 64853424 64853442 AGAAAGCACAACTCCTCCA 59 64853499 64856313 AGTTGTTGGGCTTTCTGGT 60 Novel Rattus norvegicus 81 AABR07065429.1 ENSRNOG00000055861 ENSRNOT00000088940 3 1 1 85 6 128344591 128345291 ACCAAGTTGATGGTACTTGG 58 128345339 128345357 AGTACAAGGAGGAATGGGA 57 Novel Rattus norvegicus 81 AABR07052608.1 ENSRNOG00000051580 ENSRNOT00000089321 2 1 1 106 3 65954408 65954426 CTCTGTCCAGTCAGTTGGA 59 65954496 65992061 AGAATCACCACTAGCTGCT 58 Novel Rattus norvegicus 81 AABR07052730.2 ENSRNOG00000053273 ENSRNOT00000086513 2 1 1 72 3 71097715 71099268 TGTTCCAGGTGTTGGTCTG 60 71097661 71097683 GGCTCAATAGAACTGATGAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AC128915.1 ENSRNOG00000053197 ENSRNOT00000085177 1 1 1 146 13 98559816 98559834 GTACAGAGTCCATGCCAGG 60 98560443 98560461 GATGCCTTTCGCCTAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034795.1 ENSRNOG00000052746 ENSRNOT00000091222 1 1 1 80 11 89832358 89834257 GGTAATAAAGCTGAAACACGG 58 89834296 89834317 GATCATTGAGGTCTTCTACTCC 58 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 2 1 1 81 6 136942517 136942540 GAGGTGATTCTGTCTTTGTTAAGG 60 136942579 136942758 ATCCTAGAAGTTGCTGGACC 59 Novel Rattus norvegicus 81 AABR07004241.1 ENSRNOG00000055614 ENSRNOT00000081182 2 1 1 86 1 132343962 132348771 CCATTACTCTAGGTATTGTATGAGG 58 132343900 132343919 GTGTCTACAGCTCAATTCCA 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 2 2 3 86 12 3223496 3223514 TGAGGTGTAGGCTTGACAG 59 3223558 3301971 CAGTAGAAGTCTTTAAGACAGATGC 60 Novel Rattus norvegicus 81 AABR07022053.1 ENSRNOG00000056789 ENSRNOT00000084790 2 1 1 82 13 104469600 104469621 AAGGGAAACTAAAGCAAACGAG 60 104469664 104470644 TGACAGCCTCTTGAATCGT 59 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000085939 3 1 2 81 3 83082222 83134231 CAGGATTTCCAGGAACTTCAC 59 83082161 83082180 TCATTTGCTTCATCCAGCAG 59 Novel Rattus norvegicus 81 AABR07004254.1 ENSRNOG00000053587 ENSRNOT00000086737 1 1 1 85 1 134029111 134030285 GGTCTCCATATTCCTATAGGCA 59 134029047 134029065 TGTAGCATGGTGGGTTGAG 60 Novel Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 2 1 1 67 6 142405223 142405346 AAGGTTTGCACTGTGAGGT 60 142405174 142405192 CAATGACCCTTTAGGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004364.1 ENSRNOG00000060303 ENSRNOT00000086092 2 1 1 83 1 139197600 139199112 AGACAGTGCCTAGAAAGAGTC 59 139197537 139197555 TTCCTTAGGGCAGGTTTCC 59 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000080560 2 1 2 86 16 450876 451583 TGGCAAACATGAAGAAACAG 57 450809 450828 ATTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07035307.1 ENSRNOG00000060644 ENSRNOT00000081526 3 1 1 80 12 10017435 10019456 TTCCAGAATTCAGATGACGC 58 10017374 10017392 AATCCTCTCGACTCCACTG 59 Novel Rattus norvegicus 81 AABR07053198.1 ENSRNOG00000054398 ENSRNOT00000087858 1 1 1 60 3 96097656 96097674 TCACCTCTTTGTGCTTCTG 58 96129253 96129271 ATCCTTAGGGCCATCTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053198.1 ENSRNOG00000054398 ENSRNOT00000087858 3 1 1 61 3 96097661 96097679 TCTTTGTGCTTCTGCACAG 59 96129259 96129277 TGTCAAATCCTTAGGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000089547 1 1 2 105 12 10136853 10136871 TACTTCTCAACCACCCAGC 59 10130842 10136784 CCAAAGCTCCTTCTTGGAC 59 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000089547 3 1 2 107 12 10136854 10136873 CATACTTCTCAACCACCCAG 58 10130842 10136784 CCAAAGCTCCTTCTTGGAC 59 Novel Rattus norvegicus 81 AABR07053450.1 ENSRNOG00000056480 ENSRNOT00000086990 2 1 1 82 3 107406274 107406292 AGCTAATAGCTCTCGAGCT 58 107403112 107406231 CATGTGGAATCATTATCTCAGC 57 Novel Rattus norvegicus 81 AC117065.1 ENSRNOG00000052121 ENSRNOT00000077316 3 1 1 88 12 16240740 16240758 GAGGCTTGGAAAGCAAGAC 59 16240556 16240688 CTAGAGCACTCGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 1 1 1 60 1 147424575 147435610 GAACTACCTCATCCCGAAGG 60 147424534 147424552 GTCATGCAGCACTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066748.1 ENSRNOG00000051413 ENSRNOT00000081772 1 1 1 80 9 14480194 14480213 GGAAAGGCAAACAGTCATCG 60 14480252 14485734 CATTCATTCCTAGATGTTGAGGC 60 Novel Rattus norvegicus 81 AABR07004733.2 ENSRNOG00000058110 ENSRNOT00000083929 1 1 1 134 1 153446207 153461777 CTTTCCTCAGAGCAATGCTG 59 153446092 153446110 TTTCTTTGCTTGCACAGCA 59 Novel Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 3 1 1 65 1 153456499 153457372 GGTCCAAGACCTGGAAGAG 59 153457400 153457419 TTATTTGGTAGATGGGCGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053635.2 ENSRNOG00000058578 ENSRNOT00000087002 1 1 1 85 3 117818300 117818318 TGTCCTCAAAGAGCATGGG 60 117817941 117818256 CCTTCTTGTCCTATCATTTACTGC 60 Novel Rattus norvegicus 81 AABR07066828.1 ENSRNOG00000056706 ENSRNOT00000086341 3 1 1 81 9 18085968 18098663 GTTCTGCCCTAAAGGAGCA 60 18098705 18098726 GCTCTCCAATAAAGCTCTACAC 59 Novel Rattus norvegicus 81 AABR07024814.2 ENSRNOG00000058160 ENSRNOT00000086688 2 1 1 65 16 17941336 17941355 AGAAGCAGAACATTGAATGC 57 17961899 17961917 GAGGACTTCAGGAAAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035779.1 ENSRNOG00000055147 ENSRNOT00000090947 1 1 1 80 12 22315483 22317708 TACTTCAAGGTACAGGAGCA 58 22317751 22317769 GCAGCGAATATTGTTGTGG 58 Novel Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 3 1 1 76 16 19807083 19807215 AGGTCTTACAGAAACGGTG 57 19807025 19807043 GAAGATACTGTGGAGGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000084705 3 1 3 92 12 22357215 22357233 CATCCAGTGCCAGAATTCC 59 22357288 22357707 CACTGCAGAGTGATTTCGAC 59 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 2 1 1 102 16 22562844 22562862 CTCTTGCCAGCTTTCAAGG 59 22562017 22562781 GATCTCCTTCTTCTCAACTTGC 59 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 2 2 2 89 12 22369854 22369875 CTGGCTTTGTGTTCAATAAGGA 59 22369925 22370340 TCTTACCTGCCGGAATGAG 59 Novel Rattus norvegicus 81 AABR07066875.1 ENSRNOG00000061311 ENSRNOT00000088374 3 1 1 81 9 20728678 20730147 TTAACTTCAGGTACCGGGTG 60 20728616 20728634 CAAACAGGTGCCTTTGGAG 59 Novel Rattus norvegicus 81 AABR07035782.1 ENSRNOG00000057201 ENSRNOT00000087948 2 1 1 80 12 22386805 22386824 GTGACTTTGGTTATGGAGGA 57 22386866 22388593 CTAAGCTGGATGCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07071969.1 ENSRNOG00000056322 ENSRNOT00000089770 3 1 1 100 1 178607811 178607829 TCTCAGTCCAGATGCTTCC 59 178596630 178607750 GTGGGTTTAATTGAATAGGCGA 59 Novel Rattus norvegicus 81 AABR07067034.1 ENSRNOG00000052150 ENSRNOT00000088992 2 1 1 159 9 27210685 27213024 TGGATCATCCCACATGGAC 59 27210544 27210563 GTAAATGGGTTTCCAGAGGG 58 Novel Rattus norvegicus 81 AABR07025303.1 ENSRNOG00000059212 ENSRNOT00000079403 2 1 1 81 16 32656088 32656107 CACCACATCTCAGAAAGTGG 59 32656148 32656307 CCATTAAATCTGGAACCAACAC 58 Novel Rattus norvegicus 81 AABR07053881.1 ENSRNOG00000058229 ENSRNOT00000077944 3 1 1 80 3 132172911 132172931 GCTGATGAAAGATCAACTCCC 59 132096989 132172871 TATTCGGCCATAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07035868.1 ENSRNOG00000056105 ENSRNOT00000078623 3 1 1 81 12 26242359 26246062 GTAGCTCTGAGTGTTATACTCCA 59 26246103 26246121 TCAGCTGGTCTTTGGATGG 60 Novel Rattus norvegicus 81 AC128610.1 ENSRNOG00000051795 ENSRNOT00000087917 2 1 1 80 1 185578913 185578931 AGATCCATGTCTTGTGGGC 60 185578974 185626760 CCACATTCCCTTTGTTCCAG 59 Novel Rattus norvegicus 81 AABR07025386.1 ENSRNOG00000052230 ENSRNOT00000080111 3 1 1 107 16 36297249 36297267 TCCGTTGAAGATGGGTGAG 59 36295562 36297178 GTTAGCTTCTCCGGACCTC 60 Novel Rattus norvegicus 81 AABR07005569.1 ENSRNOG00000057326 ENSRNOT00000077794 2 1 1 80 1 187973702 187974423 CTACTCTGGCCAGGTATTCC 59 187974465 187974484 GAAGAATGGTCGTTTCTGGC 60 Novel Rattus norvegicus 81 AABR07025662.1 ENSRNOG00000059162 ENSRNOT00000089914 2 1 1 81 16 44809930 44809949 AAGCATTCATGTGGAACCTC 59 44783534 44809887 GCCTTGTGTCATCAGTTCAG 59 Novel Rattus norvegicus 81 AABR07036024.1 ENSRNOG00000052944 ENSRNOT00000081483 3 1 1 81 12 30946799 30948808 GACGGGAGGTCTTAAACCC 60 30948853 30948871 GGAGAGCAGGCAGATATCG 60 Novel Rattus norvegicus 81 AABR07067388.2 ENSRNOG00000061446 ENSRNOT00000083294 2 1 1 85 9 42268962 42268980 AGAAAGGAGATGCAGAGCA 59 42216499 42268913 AGTCATCATGGGCTCACTG 60 Novel Rattus norvegicus 81 AC111428.1 ENSRNOG00000055430 ENSRNOT00000082569 3 1 1 82 3 148057942 148061792 GAACTACAACCTCTAAACACAGG 59 148061832 148061852 GTAGCAAATTTCCCAGGTCAG 59 Novel Rattus norvegicus 81 AABR07026002.3 ENSRNOG00000056149 ENSRNOT00000088102 1 1 1 80 16 58707728 58709424 CAGAACCTTCAAATCTGAGTGTC 60 58707670 58707688 CTCCATGGCAGACGTAGAG 60 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 1 1 1 96 12 38117928 38117946 TATGAGCAAGAACGAGCGA 59 38118004 38120632 AGTATTGTGCAACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07036376.1 ENSRNOG00000060770 ENSRNOT00000087812 2 1 1 65 12 40971021 40971039 AATTAAGGCTGCAGCAAGC 60 40978288 40978306 GATAAGTGAGCTTCCCGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067501.1 ENSRNOG00000057874 ENSRNOT00000089189 1 1 1 80 9 49510111 49510715 AAGCTGGTTTGAGTCTCAG 57 49510759 49510777 CCAATCTGTGAGACTCTGC 58 Novel Rattus norvegicus 81 AC128986.1 ENSRNOG00000061174 ENSRNOT00000079892 2 1 1 60 3 156726025 156726044 GTTTCTGTTCCACAGGAGAG 58 156723130 156723148 TCTAGAAGGCACAGTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026125.1 ENSRNOG00000053207 ENSRNOT00000082833 1 1 1 89 16 64984117 64984135 GACTTGGATAGGACTGGCC 60 64982386 64984064 CAAAGAAGCCACCTTTGCA 59 Novel Rattus norvegicus 81 AABR07067749.1 ENSRNOG00000051735 ENSRNOT00000088574 3 1 1 106 9 60881860 60883673 TTCATGATGATCAGGTCAGGA 59 60881774 60881792 GAAAGTGTTGCAGGAAGCT 59 Novel Rattus norvegicus 81 AABR07067775.2 ENSRNOG00000058413 ENSRNOT00000078208 3 1 1 81 9 63362280 63364517 CACTTATCACTATGAAGTGCAC 57 63362220 63362238 ATGCTCTGCTTCATGTTCC 58 Novel Rattus norvegicus 81 AABR07036507.1 ENSRNOG00000056419 ENSRNOT00000088173 1 1 1 86 12 45482695 45482713 CGAAAGCCAAGATGCAAGG 60 45482758 45487386 CTCTGATCCGCCTAATTAATTCTG 60 Novel Rattus norvegicus 81 AABR07067871.1 ENSRNOG00000057686 ENSRNOT00000083802 3 1 1 112 9 69695915 69695933 ACACTTCAGGCATCTGACC 60 69696008 69697278 CCATTCTTGTTACCTGCTGC 60 Novel Rattus norvegicus 81 AC094001.2 ENSRNOG00000054222 ENSRNOT00000088592 1 1 1 60 1 216936885 216936903 AGGAGATTTCTGCCCTGTG 59 216934548 216934567 GAGTTGAGGACTCTTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054680.1 ENSRNOG00000058758 ENSRNOT00000087486 1 1 1 60 3 166823154 166823172 GACTGTGAACCTGTCTGTC 58 166823194 166823214 ACTCCACTCGTATGAATGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095937.1 ENSRNOG00000060364 ENSRNOT00000081566 2 1 1 80 1 217931498 217931516 TTTCCTGTCTGGATGTGCA 59 217925638 217931456 TCCTAGGTGTCATGAATCCAC 59 Novel Rattus norvegicus 81 AABR07037104.1 ENSRNOG00000060484 ENSRNOT00000084383 2 1 1 81 X 12882423 12882444 GGATTGAAGATATCACCAACTG 57 12882486 12885188 AACCAGTTCCATGGATGTC 57 Novel Rattus norvegicus 81 AABR07054822.1 ENSRNOG00000052166 ENSRNOT00000087924 2 1 1 81 3 170773587 170773605 ACGCTTCTCCTCGTATCTG 59 170772523 170773542 ATCCTGCATCCTCATCCTG 59 Novel Rattus norvegicus 81 AABR07068053.1 ENSRNOG00000058100 ENSRNOT00000078057 2 1 1 84 9 80068360 80068379 CATCCTTTGGACTCCATCTG 58 80068424 80068784 CAGTCTACAGATGAGTCTAGC 57 Novel Rattus norvegicus 81 AABR07022113.1 ENSRNOG00000053904 ENSRNOT00000083559 1 1 1 80 13 108601146 108601168 GCTCAACTCTAGAGTAATACTCC 58 108594377 108601106 TTCAACCTTGCTTGTTCCA 58 Novel Rattus norvegicus 81 AABR07022202.1 ENSRNOG00000054878 ENSRNOT00000082516 1 1 1 164 13 112760483 112761227 TCACAGAAGATGGTGAAATGG 58 112761352 112761371 GCAGGAAACAATTAAGTGGG 57 Novel Rattus norvegicus 81 AABR07037607.1 ENSRNOG00000058086 ENSRNOT00000083399 1 1 1 80 X 25122059 25249902 GGTCAAACGTAACAAGAAATGG 59 25249942 25249961 CTGTAGTACGGATGGGTCTC 59 Novel Rattus norvegicus 81 AABR07026539.2 ENSRNOG00000060874 ENSRNOT00000077531 1 1 1 77 16 82430271 82430289 TTTACACTCCGCTCTCCAG 59 82430425 82430443 ATTAGCAGAGGCATGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055812.1 ENSRNOG00000055912 ENSRNOT00000084358 2 1 1 130 7 10265082 10265100 TTTGTACAATCGAGGGACC 57 10266038 10266059 CTTGTTGATCTCATCAGTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026557.2 ENSRNOG00000061488 ENSRNOT00000081647 2 1 1 134 16 83203352 83203370 TGTGCCACAGTTTGTTCTG 59 83198831 83203255 CTTGGAGAGGAGTTCTTTGC 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000088213 1 1 2 81 1 244421283 244436944 CTTCCAAGAAGTGCTGGGA 60 244421220 244421239 AGCTTACCAGTTAGAGTGCA 59 Novel Rattus norvegicus 81 AABR07056156.1 ENSRNOG00000061013 ENSRNOT00000081988 3 1 1 131 7 20629387 20629405 ATGAGTGTAGGAGAGCCCA 60 20629497 20713760 CAGACTGATTCTTGATGTAGCC 59 Novel Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 1 1 1 85 9 110399611 110401436 GATGACATTGGAGTATTTCTAGGG 59 110399549 110399567 ATTGAACTCTGGACCTCCG 59 Novel Rattus norvegicus 81 AABR07026971.1 ENSRNOG00000054646 ENSRNOT00000081789 1 1 1 96 17 7875652 7875670 GAATTGGAAGCAGACAGGT 58 7875225 7875243 AATGGAACTGGGCTAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056423.1 ENSRNOG00000057870 ENSRNOT00000085739 3 1 1 92 7 24715176 24715194 CTACCAGTCTCTTGGGACC 59 24707470 24707490 CCTTGATACTGGATCACTCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC130862.4 ENSRNOG00000059363 ENSRNOT00000088098 1 1 1 85 X 105536537 105536555 TATCTGTGGATCTCGCTCC 58 105536601 105537311 CTTCTTGCAGATTTGATTCTGG 58 Novel Rattus norvegicus 81 AABR07026975.1 ENSRNOG00000057274 ENSRNOT00000081536 1 1 1 100 17 8106197 8106218 GGAATTATCACCAGAAATGTCC 57 8106276 8118119 GGATCTGTCTTTACTAAACCGT 58 Novel Rattus norvegicus 81 AABR07056442.1 ENSRNOG00000060955 ENSRNOT00000077424 3 1 1 82 7 25763391 25764002 ATTCCAAGGCTGTAGGTGG 59 25763327 25763347 AACGTGCAGGATAGAGAAGAG 60 Novel Rattus norvegicus 81 AC139608.1 ENSRNOG00000054147 ENSRNOT00000078596 3 1 1 82 17 9470366 9470385 CTCTCAAGCCTTCAGATCAC 58 9470430 9471108 GCAACACATTGTTACGCAC 59 Novel Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 2 1 1 80 1 257041633 257043999 GAAGTCATTCTGAGGCAGGA 60 257041572 257041590 ATTCCTGCTTCTCAGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042654.1 ENSRNOG00000057797 ENSRNOT00000085554 1 1 1 95 19 1714573 1714591 GCTGGTATTCATCCAACCT 57 1714647 1715265 CAATTCTGCTTATGGAAGTTGG 58 Novel Rattus norvegicus 81 AABR07068712.2 ENSRNOG00000058356 ENSRNOT00000083914 1 1 1 80 9 116290999 116291612 AGTAGTAGCAAGAGAACTCTTACTG 60 116290943 116290962 GAAGTCCTAAGAGCAGAGCA 59 Novel Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 1 1 1 70 19 3734258 3742489 GAATGAATGGCTTCAGAAGACC 60 3734209 3734229 ACATGCCAGTATTTAGAAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068810.1 ENSRNOG00000059433 ENSRNOT00000078089 1 1 1 80 9 120345113 120345134 GATTACTACTGGATACCAAGGC 58 120345173 120349515 TTCTGCTGTTTCCTACATCAC 58 Novel Rattus norvegicus 81 AABR07027029.1 ENSRNOG00000053786 ENSRNOT00000087925 2 1 1 67 17 11654751 11654774 CTTCTCCGTGACTTAAGAATAGTC 59 11651352 11651370 AAATCATGGGCTAGGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC096317.1 ENSRNOG00000055885 ENSRNOT00000077734 3 1 1 168 1 261923688 261923708 AGTGTCAAGACTTCAGACCAG 60 261922751 261923558 GATGAGTCCCTTTCGAGCA 60 Novel Rattus norvegicus 81 AABR07027080.1 ENSRNOG00000060331 ENSRNOT00000081655 3 1 1 83 17 13413614 13413633 TGGTTCCTTCATTGTGACCT 59 13413677 13426351 AGAGGCAGCCTATATTCATGG 60 Novel Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 1 1 1 62 7 34176287 34177890 GAGGCATCGTCTAACAAGG 58 34177916 34177934 GTTTCTGCCAAGTGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006889.1 ENSRNOG00000053185 ENSRNOT00000084817 1 1 1 80 1 262929401 262929419 ACTTGTATGCTCCGAAGGA 58 262929462 262931411 TAAGTTGCTCAGCTTCTTCC 58 Novel Rattus norvegicus 81 AABR07069008.1 ENSRNOG00000052530 ENSRNOT00000082366 1 1 1 80 8 5177644 5178382 CCTCAAGCATGTACTGCAC 59 5177582 5177603 GGATGTACAAACTGGTAATCCT 58 Novel Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 2 1 1 70 19 10266731 10266749 CCTACTACCTCTGCCTCCA 60 10261439 10261457 TTGTAGAACCGGGTCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 1 1 1 80 7 37404491 37406715 ATCTCGCTTTGTGGTTCCT 59 37406753 37406777 CAATACCAAGATCTTCAGATGATCC 60 Novel Rattus norvegicus 81 AC096326.1 ENSRNOG00000060966 ENSRNOT00000086048 2 1 1 97 1 265421210 265421228 CTCTACCCTCAAGTGTCCT 58 265429562 265429580 AAGTTGTCCTTGGTCTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 2 1 1 61 8 12794660 12822959 AATCACGGTCATCACAAGC 59 12794617 12794640 GTTGATACAGAGAATCCAAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056802.1 ENSRNOG00000060920 ENSRNOT00000080263 2 1 1 82 7 41798840 41798858 GGTCGAAGCGTCATATCAG 58 41764200 41798796 AGAGAAGTTACCTCCACAGAC 59 Novel Rattus norvegicus 81 AABR07043001.2 ENSRNOG00000060505 ENSRNOT00000080200 1 1 1 84 19 16168706 16168725 AACATGAAACAAGTGAGCCT 58 16168168 16168660 GTCTGATGTGTTCCTCTGTG 58 Novel Rattus norvegicus 81 AABR07006904.1 ENSRNOG00000055137 ENSRNOT00000078951 2 1 1 80 1 270475861 270478941 TCCTCATTCTCTGGCTTCC 59 270475799 270475819 TTCCTCCAGGAAAGGAAAGAC 60 Novel Rattus norvegicus 81 AABR07027309.1 ENSRNOG00000060680 ENSRNOT00000082678 1 1 1 93 17 23795803 23803933 GACAGGATCTAGATCCTGACTG 59 23803987 23804005 AGCAGGAGTTATCTGCTGG 59 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000078748 2 2 3 87 8 23524876 23524900 GGCTGAAGATTTACTTCTAGAAGTG 60 23524945 23534892 GAGCATCTCAGAGCCTGAG 60 Novel Rattus norvegicus 81 AABR07057171.1 ENSRNOG00000061104 ENSRNOT00000078560 2 1 1 96 7 58622799 58622817 GTGTAACCTGTTCGCTACG 59 58622877 58623773 GACAGACAGACCACTCCTG 59 Novel Rattus norvegicus 81 AABR07069490.2 ENSRNOG00000058106 ENSRNOT00000082246 2 1 1 80 8 24108469 24114785 CAGATCCTAAGTGGAATTCAGG 58 24114825 24114844 CTGTATTTATGGGAGCTGCA 58 Novel Rattus norvegicus 81 AABR07006957.1 ENSRNOG00000061600 ENSRNOT00000089277 2 1 1 80 1 273059545 273059563 TTTCTCAGACAGGACTGGG 59 273059607 273060295 TCCTCTCCAAAGTGTGCTC 59 Novel Rattus norvegicus 81 AC115255.1 ENSRNOG00000052176 ENSRNOT00000084663 3 1 1 80 1 274135150 274135168 AACTAAACCACAAGGCCAG 58 274133638 274135107 CTAGGCTCTAAAGCATTCCG 58 Novel Rattus norvegicus 81 AABR07043445.1 ENSRNOG00000061812 ENSRNOT00000085366 1 1 1 81 19 28558478 28563264 CAGCATCATCAGGTCTCAG 58 28563306 28563327 AGCAACTTATTCTTCAGGAGTC 58 Novel Rattus norvegicus 81 AABR07043525.1 ENSRNOG00000055482 ENSRNOT00000088267 3 1 1 82 19 29169403 29169423 GTTTCTCGATCTTGGAGAGGA 59 29137185 29169359 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07043601.4 ENSRNOG00000058833 ENSRNOT00000090322 2 1 1 60 19 30775793 30775813 CTCAGATCCAAGAGAAACGAG 58 30776725 30776743 CTGAAGATAGGAGCACGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.3 ENSRNOG00000056347 ENSRNOT00000080549 3 1 1 60 8 40037646 40037666 CTTCAGTCCTCAAGTTGTCTC 58 40037362 40037381 TCAAGACAGGGTTGGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000084015 1 1 2 80 17 37687587 37689159 GAAGTAGAGGGAGAAGGTGTC 59 37689196 37689219 CATTTCAGTAGGAAGTACTTCTGC 60 Novel Rattus norvegicus 81 AABR07057586.1 ENSRNOG00000057489 ENSRNOT00000091480 1 1 1 81 7 79178451 79179276 AAACGTCCACGAAAGAGAC 58 79179320 79179339 TGCTAGTCATGGAATAGCCA 59 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 2 2 2 81 10 107629 109350 TCGACAAGACAATCTGCCA 59 109395 109413 TTCAAATCCTGCACCAAGG 58 Novel Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 2 1 1 77 19 36173641 36174952 GATCCATGAACAAGAGCCC 58 36174993 36175011 ACATGACCTCTTTCTCCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069987.1 ENSRNOG00000057045 ENSRNOT00000086935 1 1 1 79 8 44367505 44367526 CCAGCAAATCTTAATCCCAGTC 60 44366806 44366824 TACTCAGAGGAGCCTGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 1 2 2 80 10 196628 197044 CAGTGGATTCAGGAACGAG 58 196566 196585 CCAGAAGATGTCAGTCATCC 58 Novel Rattus norvegicus 81 AABR07073391.1 ENSRNOG00000058361 ENSRNOT00000078268 3 1 1 106 8 46501110 46502492 TCAGCATCGAAGATAGACAC 57 46503408 46503427 CAAGATCCAAGTACAGGGAC 58 Novel Rattus norvegicus 81 AABR07070069.1 ENSRNOG00000053546 ENSRNOT00000089282 2 1 1 80 8 47557188 47557206 AATGGCAGCTTCTTTCCTC 58 47557249 47560346 CAATGTGTCTTCAGAGGCTC 59 Novel Rattus norvegicus 81 AC129395.2 ENSRNOG00000057329 ENSRNOT00000085015 1 1 1 81 10 6889379 6889397 CTCAGAAGCCAGGAGAGTG 60 6889442 6889969 ACAGGAGCACTGAAATCCA 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 2 2 2 80 19 38365659 38365974 TCATCGTTCTGAATGTTACAGC 59 38365600 38365621 CCAGTAGTTCATTCCTCAAGGT 60 Novel Rattus norvegicus 81 AC098959.1 ENSRNOG00000054105 ENSRNOT00000089322 1 1 1 84 10 14804466 14804484 CTGTTCAACTGCTTCTCGC 60 14802874 14804418 AGCCAGCTGGGAATTAGTG 60 Novel Rattus norvegicus 81 AABR07070099.1 ENSRNOG00000058295 ENSRNOT00000082176 1 1 1 80 8 52235309 52235327 TGTCACCCTGTCATATGCC 60 52233182 52235269 CTCTTAAGATGCTCTAGACCCTC 60 Novel Rattus norvegicus 81 AABR07029220.1 ENSRNOG00000053667 ENSRNOT00000084188 2 1 1 60 10 16192353 16192371 ACCTGCTGGTTCTATGCTC 60 16191658 16191677 CAGTAAGTGTCTTCACCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041247.3 ENSRNOG00000052259 ENSRNOT00000077131 1 1 1 86 X 124111983 124112002 TGGAGACTTACTCAGAACCC 59 124111397 124111934 AGGAAAGTACAGTCTGGGC 59 Novel Rattus norvegicus 81 AABR07007715.1 ENSRNOG00000061142 ENSRNOT00000081057 1 1 1 80 2 25331411 25331430 TATAGCAGCAGATGGGAAGG 59 25331473 25343913 TTGTGAGCATCTCAACCGA 59 Novel Rattus norvegicus 81 AABR07070161.4 ENSRNOG00000055224 ENSRNOT00000080908 2 1 1 82 8 55530131 55530264 TCTTGCATATCCAGCTTAAGG 58 55530069 55530090 GGTGACTGTTCCATAGAATCTC 58 Novel Rattus norvegicus 81 AABR07007717.2 ENSRNOG00000057200 ENSRNOT00000089946 3 1 1 80 2 25547332 25547353 ATCAGAGAAACACTACTGAGGT 59 25546606 25547292 TTGTGCAGTTCAACTGTAGC 59 Novel Rattus norvegicus 81 AABR07041724.2 ENSRNOG00000061916 ENSRNOT00000080023 1 1 1 80 X 137709493 137709513 TCTTTAAAGCACAGAACTGCC 59 137706350 137709453 CTCTGAAGACATTCGACACTG 59 Novel Rattus norvegicus 81 AABR07058360.2 ENSRNOG00000053271 ENSRNOT00000083791 2 1 1 176 7 111697217 111697235 ACCACCAATGCCTTAACAG 58 111675347 111697078 GAGCTTTAGGAGACCATCTC 57 Novel Rattus norvegicus 81 AC119356.1 ENSRNOG00000058744 ENSRNOT00000086947 1 1 1 80 2 28346845 28348252 TCAGTTGATCTCAGGTTTCAG 58 28348293 28348312 CACAGAGATGCATACTGGTG 59 Novel Rattus norvegicus 81 AABR07042440.2 ENSRNOG00000057466 ENSRNOT00000080296 2 1 1 80 X 155796126 155796145 ACAGGCAGCTCAAGTAAGAG 60 155794458 155796083 TCCTCAACATTTGGCATGC 59 Novel Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000086415 1 1 2 80 2 28841478 28841498 AGGAATGACAGTGAACAACTC 58 28836931 28841438 TGCAATGAAGTCCTTCAAGAC 59 Novel Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 2 1 1 72 7 126382983 126383583 TCACTCCAGAGACAAAGCC 59 126383619 126383637 TCTCATTCTGCTCAGCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.1 ENSRNOG00000053300 ENSRNOT00000088476 1 1 1 80 4 84367 86126 GGCTTTGTCAATGACTCTCAG 59 86168 86186 CTTCTGCTGCATCTGAAGC 59 Novel Rattus norvegicus 81 AABR07028113.1 ENSRNOG00000060370 ENSRNOT00000082440 1 1 1 80 17 57472557 57472780 GAAGACTCAGTTTCACTGCC 59 57472820 57472841 CCTCACTTCTACAGATGAAGAC 58 Novel Rattus norvegicus 81 AABR07028186.1 ENSRNOG00000053465 ENSRNOT00000089697 1 1 1 93 17 59365322 59365508 AAGAATGGGTACAGGCGTC 60 59365563 59365583 ATCTACGTAAGTTCACTGCCA 59 Novel Rattus norvegicus 81 AABR07044559.1 ENSRNOG00000056023 ENSRNOT00000084010 2 1 1 83 20 10595763 10595781 CTCATTGATGGGCTGAGTG 58 10595826 10596548 GCCTACGAGTCTGTTAATCTG 58 Novel Rattus norvegicus 81 AABR07007986.1 ENSRNOG00000053187 ENSRNOT00000078915 3 1 1 81 2 37222295 37223635 CATGTTGCATCACATTCACAC 59 37223675 37223696 GTTGTCTCTGCTTGTTTATACG 58 Novel Rattus norvegicus 81 AABR07028258.1 ENSRNOG00000058781 ENSRNOT00000091239 2 1 1 85 17 62657993 62658011 AGTTTAGAACCCAGTCACG 57 62657536 62657947 CAGAAAGTCATGTTTCGATCTC 58 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000082294 3 1 2 81 4 16827535 16827553 TTTGAGCCTTCACTGTCTG 58 16827598 16828002 AGATATGTGGTACAGCTGC 57 Novel Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 2 1 1 72 4 17666259 17668580 AAATGGAAAGACCTATGAGGG 58 17668613 17668632 AGCGTACACGTAGAGATCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044671.1 ENSRNOG00000061116 ENSRNOT00000081523 3 1 1 92 20 16641974 16652533 TGAGCATGTATACGACGCA 59 16641900 16641921 CTGAACTGCTTCTTCATTACCA 59 Novel Rattus norvegicus 81 AABR07008014.1 ENSRNOG00000053767 ENSRNOT00000082443 3 1 1 63 2 38913443 38913461 CAGGAGTTAAGAGGCTCAC 57 38909657 38909677 TTAAAGAGACAACCTGCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070774.1 ENSRNOG00000055032 ENSRNOT00000088991 2 1 1 74 8 84044435 84044453 GAATGCAGCTTCACATCTG 57 84002084 84002104 GTTGTCACTGTTATCACTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059641.1 ENSRNOG00000052257 ENSRNOT00000084091 1 1 1 80 4 29623277 29624098 ATGTCAAAGATCAGGGCTC 57 29623215 29623233 TCTACCACATCTCCCTGAG 58 Novel Rattus norvegicus 81 AABR07059807.1 ENSRNOG00000054988 ENSRNOT00000078563 3 1 1 81 4 36726753 36726774 AGGAATATCACCTCTTCACGTC 60 36726815 36728954 GGAATTCACTGGTCTTGGGA 60 Novel Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 2 1 1 60 17 79978394 79978413 AAGTGGATGGAACAGAGTGG 60 79964682 79978373 AATCTTTGCCGTTTCGAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059875.2 ENSRNOG00000054496 ENSRNOT00000091342 3 1 1 83 4 39644735 39644754 AGAAACAGGGAATGTGTTGC 59 39644588 39644689 GTGACAGATGGCAGTTTGG 59 Novel Rattus norvegicus 81 AABR07071385.1 ENSRNOG00000056504 ENSRNOT00000077851 1 1 1 63 8 112996286 112996305 TCAGTATCATCCCTGCTCTC 58 112993116 112993134 CTGTATGGAACCAAGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060222.1 ENSRNOG00000051677 ENSRNOT00000087972 3 1 1 88 4 63078380 63083916 TGGCTGAGATAAATGTGGAC 58 63078311 63078332 CTTTATAAGAGTTGCCATGGTC 57 Novel Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000082061 2 1 2 66 8 114039216 114039234 AGAGTGCAGTTTCGATGGA 59 114038312 114038333 AGGGAGGAAGAAATGATTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000083444,ENSRNOT00000082424 2 2 2 119 8 118463907 118463925 GATGTCCTTTCCGACTGTG 58 118464870 118464888 CAGAATTGGTGTGGCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081572 2 1 3 80 2 59850555 59855175 GAACACCAGCTCAGAATTCC 59 59855218 59855236 TGCTTTCACCTTTGGTCTC 58 Novel Rattus norvegicus 81 AABR07073453.1 ENSRNOG00000051701 ENSRNOT00000079538 2 1 1 100 8 119372025 119376810 CTCAGACAGGACCGAAGAG 59 119376874 119376892 TGAGAATGCTGTGACCCTC 59 Novel Rattus norvegicus 81 AABR07045399.2 ENSRNOG00000054538 ENSRNOT00000082658 1 1 1 86 20 46164634 46166344 CTGTGGAGGTTCTTCAGCA 60 46166394 46166412 CTGTGGAAGTCCTCTGTGG 60 Novel Rattus norvegicus 81 AABR07008491.1 ENSRNOG00000059296 ENSRNOT00000082976 3 1 1 83 2 61496064 61507496 AGAAGACTAAAGGGTTCATGTG 58 61507538 61507558 TGATAAGGTAAATGGTAGCCG 58 Novel Rattus norvegicus 81 AABR07071549.1 ENSRNOG00000052055 ENSRNOT00000088777 2 1 1 89 8 121583529 121583548 ATTCCACAGGACGAGAAGAG 59 121583600 121586497 AGATTCTCTGCACCTACGG 59 Novel Rattus norvegicus 81 AABR07043825.1 ENSRNOG00000060265 ENSRNOT00000082679 1 1 1 95 19 42516281 42516301 AATCTCTTCCTCAGGTTTGTG 58 42456190 42516224 CTTCTTCAGGGCGAAAGTC 59 Novel Rattus norvegicus 81 AABR07043825.1 ENSRNOG00000060265 ENSRNOT00000082679 3 1 1 98 19 42456199 42516233 AACTTCAGTGACTTTCGCC 58 42456119 42456137 GTAGCATTACTTCCACGGG 58 Novel Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 1 1 1 82 4 80484385 80486382 AACTAATCGGGAGGAGCTG 59 80486428 80486446 TTTCCCATCACAGAGGAGC 59 Novel Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 3 1 1 153 2 73912287 73956522 AAATGTTGTTCAGGACTCAGC 59 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 2 1 1 80 19 45850155 45850563 GAAATAAGAAACGGAAGCACC 58 45850095 45850114 TACAACATCACAGAGGAGCT 59 Novel Rattus norvegicus 81 AABR07071622.1 ENSRNOG00000059167 ENSRNOT00000080854 2 1 1 81 8 124650275 124658987 ATTACATGGAGAAGCTGTGAC 58 124650214 124650236 CTTCTGGTCTTCCTTACTTATCC 58 Novel Rattus norvegicus 81 AABR07071659.1 ENSRNOG00000051659 ENSRNOT00000078088 2 1 1 60 8 126171970 126176405 GACCAGCGATAGATTGGTC 58 126171928 126171949 GCTCCTATTTAATTCGCTCCTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07044001.2 ENSRNOG00000055320 ENSRNOT00000087103 2 1 1 84 19 52058110 52058128 GAAGACAGCTGGTTCTCAC 58 52058174 52059578 ATCTTTCTGACCCTTTGTCAG 58 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000077173 3 1 2 81 7 134986626 134988451 GTCAATTTAGACTGAGATCTCTTCC 59 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel Rattus norvegicus 81 AABR07058758.1 ENSRNOG00000054356 ENSRNOT00000091363 2 1 1 80 7 136490759 136490779 GAGTTAGACGTATTGGATGGC 59 136462238 136490720 GTAAACTCCATGGCCTTAAGTG 59 Novel Rattus norvegicus 81 AABR07044079.1 ENSRNOG00000051742 ENSRNOT00000088854 2 1 1 82 19 56403815 56404127 TGATTAAAGATTGGGTGGCCT 60 56403753 56403771 AATCAGGAAGGCAGTGACC 60 Novel Rattus norvegicus 81 AABR07008991.1 ENSRNOG00000057131 ENSRNOT00000079647 2 1 1 82 2 82506470 82507300 GAGATCAGAATATTCTTGCAGAGC 60 82506411 82506434 CGTACGTAGACTTCAACTTAAAGG 60 Novel Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 2 1 1 80 19 56541202 56541458 AATATGGATCAGCATGGAGGA 59 56541500 56541518 GACGCTCTCAATTCTGTGG 59 Novel Rattus norvegicus 81 AABR07058786.1 ENSRNOG00000054027 ENSRNOT00000077802 1 1 1 99 7 137482048 137482066 TCTCCTGGCATCTTTAGGT 58 137480351 137481985 ATAAATGCACCTCCAAGGG 58 Novel Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 1 1 1 72 2 82771684 82772676 TTGTTGTGACACATGAGGC 59 82772711 82772730 GAATTCTTACACTGGAGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009028.1 ENSRNOG00000051925 ENSRNOT00000080377 3 1 1 61 2 84160023 84160042 GATGCTGACACCAACTTGTC 60 84127615 84160000 TAGTGTCTTCGCCTCAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044148.1 ENSRNOG00000061610 ENSRNOT00000083636 1 1 1 85 19 59656399 59660409 CTCCTAAGGACAAGAACTTTCC 59 59660455 59660473 CTTTACCAAAGGTGTCGGG 59 Novel Rattus norvegicus 81 AABR07072667.1 ENSRNOG00000060506 ENSRNOT00000077394 1 1 1 80 19 59690891 59700239 CTTCTTCTAGAAACGGACAGAC 59 59690832 59690850 AACACGGGTGATTTCACTG 58 Novel Rattus norvegicus 81 AABR07072667.1 ENSRNOG00000060506 ENSRNOT00000077394 2 1 1 80 19 59690891 59700238 TTCTTCTAGAAACGGACAGAC 58 59690831 59690850 TAACACGGGTGATTTCACTG 58 Novel Rattus norvegicus 81 AABR07044173.1 ENSRNOG00000055152 ENSRNOT00000077683 1 1 1 80 19 61511738 61511756 ATGCTGGGATGTATCCTGG 59 61511800 61536444 TCTAGGCTTCTGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07058955.1 ENSRNOG00000053626 ENSRNOT00000087494 1 1 1 80 7 145370517 145370536 TTCAAAGGAGTCAAGTTCGC 59 145370578 145371381 CAGGAACTCCTTCAAGTCAG 58 Novel Rattus norvegicus 81 AABR07009600.1 ENSRNOG00000056127 ENSRNOT00000086516 2 1 1 98 2 105476142 105476163 TCCTGCTTCTTAAATGAACCCT 60 105475789 105476089 GACAGCATATCCTTATTGTATAGCC 59 Novel Rattus norvegicus 81 AABR07009634.2 ENSRNOG00000052903 ENSRNOT00000091882 2 1 1 101 2 106593242 106593263 GGAATTGCATAACTACAAGGAC 58 106660534 106660555 CTCCACTTGACAAGATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC116283.1 ENSRNOG00000059157 ENSRNOT00000087200 2 1 1 81 2 123454837 123464467 GGCAAACTGAACCAAAGCA 60 123454774 123454794 CTTTCAATGTAGCATGAGCCT 59 Novel Rattus norvegicus 81 AABR07010330.2 ENSRNOG00000060192 ENSRNOT00000078133 2 1 1 81 2 132348346 132352881 GGAAGGTCCTACAGATTCAG 57 132348284 132348302 TTGTGGTGGATTTATGGGC 58 Novel Rattus norvegicus 81 AABR07010587.1 ENSRNOG00000054842 ENSRNOT00000078574 3 1 1 80 2 141637402 141637421 ACTGACATCACACTAGTGCT 59 141637464 141639970 CTTCTTGGCTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07010592.1 ENSRNOG00000053561 ENSRNOT00000083742 2 1 1 80 2 142167881 142167900 ACGCTAACATTGTTCTGTGG 59 142167943 142168058 ATCTGCCTTTCTGCTCTGG 60 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 1 1 1 63 2 162021747 162022789 TTTCCTTCTTACAGCAGCA 57 162022816 162022834 ATCAGGCTTCATACTTGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011545.1 ENSRNOG00000049459 ENSRNOT00000073022 3 1 1 85 2 163341515 163341533 TTCCGAATGGAGTCCTTGG 59 163321983 163341472 CTACGTCTATAATATTTCCAGGCAC 59 Novel Rattus norvegicus 81 AABR07012053.2 ENSRNOG00000053765 ENSRNOT00000090222 3 1 1 121 2 184123024 184123045 ATTGACAGTGGTACCTTATGTG 58 184111943 184121818 AATCCCATTTCCCTTCTGC 58 Novel Rattus norvegicus 81 AC098750.2 ENSRNOG00000054024 ENSRNOT00000085471 2 1 1 99 2 188597364 188597382 CCTAATCAAACACCTGCCC 59 188596447 188596465 TCTGTAGGCTTTGTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012711.1 ENSRNOG00000054483 ENSRNOT00000084047 2 1 1 81 2 203049464 203049488 AGAGGAGTTTCTACTGAAGTATCAC 60 203049527 203049970 TAGAGGCTCAGCTTTGTCC 59 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 1 1 1 109 14 8895754 8895772 TATGAGATGGACCTCGGTG 58 8894487 8895681 TTCACCATCCAGTGAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014306.1 ENSRNOG00000051571 ENSRNOT00000084014 1 1 1 80 14 8903634 8912491 CCATTCGAGGATCTTCAACG 59 8912533 8912552 GACATTGTGCTTTGTAAGCC 58 Novel Rattus norvegicus 81 AABR07013304.1 ENSRNOG00000055380 ENSRNOT00000077485 3 1 1 226 2 232650763 232650782 CAGGAACAAAGTTCCCACAG 59 232637260 232648327 CTCCTTTCTTGCAGTCCTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013718.1 ENSRNOG00000054185 ENSRNOT00000084675 1 1 1 80 2 252869515 252872353 TTCTGACTCAAGCGGTCTC 60 252869453 252869473 TTGTTTGATGTCCGGTTACTC 59 Novel Rattus norvegicus 81 AABR07013724.1 ENSRNOG00000057103 ENSRNOT00000080920 1 1 1 80 2 253691752 253691770 AGATGATGACTCAGCATGG 57 253691814 253698806 TAGGTGTCTTGACATGCTG 57 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443 3 1 4 82 7 115868316 115873155 AGAAACACTCCAGATAACTTGG 58 115868255 115868273 TTAACCACCATGTCCTCCC 59 Novel Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 3 1 1 60 10 101989814 101989833 TACACTGAAAGCCAAGAGTG 58 101989858 101989876 ATTCCAGAGCCTTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041737 ENSRNOT00000063490 2 1 1 60 1 70440761 70440782 CTGATTAGTTCTTGGATGGGAG 58 70440722 70440743 TACATCAGTAGATCCCTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000052201 ENSRNOT00000087193 3 1 1 63 3 103986631 103986651 TGGCTCCTCTGTTTATAACAC 58 103986676 103986694 ACTTTGTAGCCCTCCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053152.1 ENSRNOG00000041826 ENSRNOT00000063579 1 1 1 60 3 94352225 94352246 GGAGTGTTTGCTGTATAATTGG 58 94352186 94352204 CAAGTCATGCCTACTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034131.1 ENSRNOG00000058877 ENSRNOT00000083966 1 1 1 70 11 54829718 54829736 TGAGGTCATGGCAGATCTG 59 54829785 54829803 AAGGAAAGAGGAGAAGGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 3 1 1 80 X 53046034 53046057 AGATTTCACCTCACATGCGA 60 53046098 53046118 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07028530.1 ENSRNOG00000047547 ENSRNOT00000072769 1 1 1 60 17 73695581 73695599 AATGCCTCCATGAGATCCA 59 73695623 73695641 TCCTTCCACCCTTGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072995.1 ENSRNOG00000056668 ENSRNOT00000086134 1 1 1 60 4 56675658 56675678 TCAGATACCTCATAAGAGCCT 58 56675618 56675636 CTACTTTCTCCCTGCTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039139.1 ENSRNOG00000050331 ENSRNOT00000074830 3 1 1 72 X 69152302 69152320 GCTGGTGCTAAATTGGGAG 59 69152244 69152262 GATATTGTCCACTGGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008513.1 ENSRNOG00000056876 ENSRNOT00000078624 2 1 1 70 2 62904470 62904490 CAGTAAGTAAATCTGGGTGGG 58 62904522 62904540 TAGCGTCAGAATCACCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 3 2 4 80 19 17428778 17431014 AGCTCATGAATCTGGAACAC 58 17428717 17428736 GAAGAAGGCTGAACAGTTCC 59 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 1 1 1 63 1 214446736 214446754 AAGGAACTCAGGACACTGC 60 214446689 214446707 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 3 1 1 64 1 214446737 214446755 CAAGGAACTCAGGACACTG 58 214446689 214446707 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 3 1 1 70 16 20108505 20108524 ATTTACGGAAAGTCAGGGCA 60 20108449 20108468 GCACAGGTTTCTAGTCTACC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887 2 1 5 93 6 114780409 114966731 GAATACTCTAAATACAGTCTCCACG 59 114770908 114780361 GACACATTGAGTTCCTAAAGGT 58 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 2 2 4 88 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77749597 77902221 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 2 2 2 85 4 114818607 114818766 TGAACTCTGGTGGTTCTGG 59 114818540 114818559 TGAGTTTAGCTCTTCGGTGG 60 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376 1 1 2 139 4 114818850 114819358 ATCCCATCTGCTTCGAGAG 59 114818588 114818606 TGAGGACAGTCCAAAGCAG 60 Novel Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 2 1 1 68 12 54648 54667 TGTAAGTTCAGCTCCCAGAG 59 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 3 1 1 118 2 78283287 78283305 TGATCTGTATGCCAACCCA 59 78283134 78283152 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA6 ENSRNOG00000054636 ENSRNOT00000084592 1 1 1 60 14 65281456 65281475 TTCACAGCTGACTGCTATCC 60 65281497 65281516 CATCCACCACTCATCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 2 2 5 97 2 123761678 123762138 CATTACAAGATGCCAACGTG 58 123762198 123762216 CATGATGAGCTCAGCATCC 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127 1 1 4 80 1 49290238 49425763 GGATGTCAGGAACCCTGTC 60 49290176 49290195 ACACAGTACAAGTGGAAGCA 60 Novel Rattus norvegicus 81 AABR07032277.2 ENSRNOG00000057224 ENSRNOT00000080030 3 1 1 85 18 59328744 59328765 TCCTGAAGTGGAATAATCTTGG 58 59328811 59328831 TGAACAGAAACACAGTCCC 58 Novel Rattus norvegicus 81 SNORA64 ENSRNOG00000059404 ENSRNOT00000081773 3 1 1 61 10 14089019 14089037 TAGGCTTTACCCGTGTGAC 59 14089061 14089080 CAAGTACTGGAGGAACTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061780.1 ENSRNOG00000054430 ENSRNOT00000081511 1 1 1 60 4 143911871 143911889 TGCTGAGAGCTTCTCTGAC 59 143911912 143911931 CTGCCTCATGTCACAAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058301 ENSRNOT00000082519 3 1 1 60 1 246926779 246926799 TCAAGGGTATACGAGTAGCTG 59 246926819 246926839 CTTTCTTGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002973.1 ENSRNOG00000050148 ENSRNOT00000074615 3 1 1 80 1 90949328 90949348 CCTTTCTCTGTCTGTCACC 58 90949266 90949286 TAGTGATGCCCTAAAGAATCC 57 Novel Rattus norvegicus 81 AC124205.2 ENSRNOG00000059975 ENSRNOT00000085007 1 1 1 80 5 140275568 140459759 TGTGACACAGGATGTGGAG 59 140275506 140275526 CTCAACTCAGGATCCTTAGCA 59 Novel Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 1 1 1 97 1 20332054 20332075 TCCTGTCCTAATAAGAACTGGG 59 20331977 20331995 ATAAGAAAGCAGCCGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 1 1 1 83 X 123024315 123024333 TCATAGGGCAAGCCATGAC 60 123025458 123025482 CTTCTTCCTCATCAACTATGTTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 3 1 1 85 X 123024310 123024328 GGAAATCATAGGGCAAGCC 59 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 1 2 2 100 2 208543591 208545141 CTTTCACCTGGCACTTCAG 59 208550238 208550258 ACACAAACGATCAGAATGGAC 59 Novel Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 1 1 1 60 20 18046174 18046192 GACGTGCATGAGGTTAGGA 60 18046346 18046366 TCATCATCTTCTGAGCTAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290 3 1 3 100 X 73501494 73501512 CACACCAACAGAGGAAGAG 58 73501575 73502392 TCAGATGTTGAACTTCAGCA 58 Novel Rattus norvegicus 81 AC133273.1 ENSRNOG00000002486 ENSRNOT00000003363 3 1 1 71 10 34593465 34593483 CTATTCTGAGAGCAAGGGC 58 34593520 34593538 ATCAGAGGGTTGAGCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060400 ENSRNOT00000085105 2 1 1 60 5 88341896 88341914 TTGCTGTGCTACACAAGTG 59 88341854 88341875 CACTTGAGTGTAGATGTAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041604.1 ENSRNOG00000038118 ENSRNOT00000058004 2 1 1 60 X 134618362 134618381 GCTAACATCAAATGGGTGAC 57 134618403 134618422 GTGAAGATGCCAGTAGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021688.1 ENSRNOG00000050203 ENSRNOT00000070867 3 1 1 60 13 85549820 85549838 GGGACTCTTGTTACAAGCG 59 85549778 85549796 AAATGCAGAATCTCAGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052258 ENSRNOT00000082069 1 1 1 60 13 31370621 31370639 GAGAAGATTAGCATGGCCC 58 31370663 31370681 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 2 1 1 60 7 121773746 121773766 GATCACTGTCACTTCTGAGGT 60 121773876 121773894 GGTTGATCTGGAAGTAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 2 1 1 110 6 140642199 140642218 GACATCAGTCTCAGCTTGGT 60 140641994 140642012 TTTCAGAGACCTTCCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 1 1 1 60 1 99888420 99888441 CTTCATCTTCAGTTTCCTCAGC 59 99889270 99889288 AAAGGCGTACTGTAGCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052 2 1 6 80 10 74883441 74883461 ACACTATGAGAACTACAGGGC 59 74883503 74883711 GATCTGTCCTTGCGATTCC 58 Novel Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 2 1 1 86 7 13055337 13055355 CTCTGGAAGCACTACCCTG 60 13055411 13055429 GAGGACAAGATGGACCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 2 1 1 77 18 8503639 8503657 AAATCTGACCTGGCAAGAG 57 8497637 8497655 ATGTTTGTTCCTCAGCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 3 1 1 77 18 8503638 8503656 AATCTGACCTGGCAAGAGG 59 8497636 8497655 CATGTTTGTTCCTCAGCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 2 2 2 86 1 11984282 11985883 AGAAAGCAGGGTTTCACCA 60 11984214 11984232 AATGTGCTATCACCTGCCA 59 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 2 1 1 74 1 12400880 12400898 ATGACCAAAGTGAACAGGG 58 12403155 12403173 ATCTTCGATCAGGAGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 1 1 1 60 15 1161403 1161422 ATGCCAGCATGATGAATGTC 59 1152900 1152921 AATTAGGTCCACATCTCTACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 1 1 1 65 18 21111560 21111579 CTGTGACAGACGTCTTACTG 58 21113406 21113427 GGTTCTTCAACAACTCTAAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 3 1 1 71 5 133892896 133892916 AGACTCAAGAGCTTCCTTCTC 59 133890126 133890144 TTCTTGTCCACTCAGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 2 2 2 80 1 88265243 88266843 TAAGGAAAGCAAAGGCTGG 58 88266882 88266905 GATGACTCTTCTTCATAGAGTTCC 59 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 2 1 1 103 18 85816869 85816888 ATTGGAGCTATTGTCGTGTG 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 1 2 3 80 11 27569639 27574164 GGAAGGAGAACTACAAGCTC 58 27574206 27574225 CCAGGGCTTAGAAGTTTGAC 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492 1 1 2 83 9 605115 605252 ATCTCCAGCTTGTGTATGAG 57 605051 605070 GGTCAATGTACTTCTTGGCT 58 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853 2 2 3 85 6 125302280 125302301 GCCTTCTATATTGTGAGATGGA 58 125298540 125302235 GGCCTTTCATTCCATATCCC 59 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043,ENSRNOT00000080405 1 2 2 82 12 3807737 3807755 CACCTATCCAGAGCATGAG 57 3807801 3807927 GGGAGTATGCCTTCATGAC 58 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 1 1 1 60 1 147435594 147435612 AGGAACTACCTCATCCCGA 59 147424536 147424554 CATGCAGCACTGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 3 1 1 60 3 120257555 120257574 TCATGCATCTCATCATTGCT 58 120259534 120259553 AACTCAGCTCTAGGAATGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 1 1 1 60 16 18598121 18598139 ACACAGTCATCTGCAGAGG 59 18601921 18601941 CATCAAACTTTGCCTTCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 3 1 1 61 9 29366497 29366516 TCTTTATGCTGATGAGGGCA 59 29403356 29403375 TACAAGATGGCCTCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 1 1 1 123 3 155687631 155687649 AGAAGATCTTCGCTGGTCG 60 155679346 155679364 ATAGACATGGCACTGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 1 1 1 68 17 18866592 18866610 GAACTACATCTGAGGGCCC 60 18866923 18866941 ACTTTGGGAGAACTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 1 1 1 67 17 20636849 20636867 ATTAGAGGAGTTCAGCGGC 60 20668849 20668867 GAGAGTTCTGGGTTCGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 2 1 1 60 1 273969834 273969852 TTCCTGACCGATTTCAGGG 59 273968424 273968442 TAATGCAGACCGCTAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 2 1 1 60 19 36173618 36173637 TCGCCTCCTTTATGTGACAG 60 36174952 36174971 TGGATTTGGCCTGAAGTAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 3 1 1 65 10 15170424 15170442 ACTGACCTACGATTGGCAG 60 15175427 15175445 CAACTGGTGTTGAGAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 2 1 1 60 2 22867890 22867911 ATGTCTTTGGTACTTGTTTGCC 60 22864579 22864597 AAATCCACAGAGGTGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 3 1 1 95 8 53832027 53832045 CACAGCCTCTCAACTTCAG 58 53837429 53837448 TCATATGTTTGTCTCGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 1 2 2 80 17 62682428 62682447 CATTTAGCTCCCAGTCACGA 60 62673390 62682385 AGTCACGTTTCGAGCTCTC 60 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 3 1 1 63 8 84893249 84893267 AGAGCCCTATGAAAGGAGC 59 84886664 84886683 TCCTCTTCCTCTTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 3 1 1 60 7 140008677 140008696 GTCTCCAGTGTTTCTTCCAG 58 140010230 140010248 TGAGAAAGTCTTCTGCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009 2 1 2 82 2 204040888 204040906 CTCGTGCAGACAACATCTG 59 204040951 204042859 AGAGAAGAGGCCATTCTGTG 60 Novel Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332 2 1 2 80 2 254034641 254034659 CGTGGAGACACAGAATCTG 58 254034700 254038820 TCCAACTGTTCCTTAAGTTTGG 59 Novel Rattus norvegicus 81 LOC679475 ENSRNOG00000042970 ENSRNOT00000065242 1 1 1 240 2 193100914 193100932 TTCTTCCTGCTGTAGCCTG 59 193083973 193100710 AAGTGATGCTTGGCTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Frmpd4 ENSRNOG00000004118 ENSRNOT00000039796 1 1 1 80 X 28162951 28162971 CAAGATTGAAGTCCAATCCAG 57 28163012 28166520 CTTTAACAGTTTCCGACACC 57 NA Rattus norvegicus 81 RGD1562962 ENSRNOG00000039192 ENSRNOT00000045023 2 1 1 60 X 112555255 112555274 TTCTGGATATGGTGGAGCTG 59 112555297 112555315 CGTTTGTCCTTCTGAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 3 1 1 80 2 217963526 217963544 AACTGGATGTCCCAAACTC 57 217963585 217971911 AATCTGAGTTAAGGTATCTGGC 58 NA Rattus norvegicus 81 Olr1670 ENSRNOG00000049000 ENSRNOT00000044420 3 1 1 60 20 386713 386733 CAGTCCAGCTTTATTTCTTCC 57 386753 386773 ATAAGAGCCAGGAGGATACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910420 ENSRNOG00000048940 ENSRNOT00000072457 1 1 1 60 20 753313 753332 CCAGTTCTTCTGTGATGTCC 58 753272 753296 CCCAGAATAGTCATTAGAACAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210,ENSRNOT00000080331,ENSRNOT00000079802 2 4 5 80 X 22279976 22280475 CAGAGATGTGTTGGACTGTG 59 22280517 22280536 GATTGGAACTTCCTGAGTGC 59 NA Rattus norvegicus 81 Prmt6 ENSRNOG00000017187 ENSRNOT00000023079 2 1 1 217 2 213177266 213177284 TTTGCCATGGAGGACTGAG 60 213175149 213175168 TTCATGTATAGCCAAGGCGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 3 2 2 80 5 171627703 171628558 ATCAGCAACAAAGGAGAACTG 59 171627643 171627662 TTGCAGTGTGATCTCATCAG 58 NA Rattus norvegicus 81 Cldn19 ENSRNOG00000007922 ENSRNOT00000047151 3 1 1 80 5 138302981 138302999 TGTCTCATGGTACGCTACC 59 138303042 138304560 GGACCAAATTCATACCTGGC 59 NA Rattus norvegicus 81 Mir6314 ENSRNOG00000050085 ENSRNOT00000071550 2 1 1 64 2 211682744 211682763 TATAAGGTCGCAGCCTTCAG 60 211682790 211682808 ACCATTGAGACCACAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000059660 2 1 2 80 15 36470545 36470692 CTGTTAAAGCTGAAGAGTAAGGC 60 36470487 36470505 TTTCACTTTGACGTTGCGT 59 NA Rattus norvegicus 81 Chchd7 ENSRNOG00000031769 ENSRNOT00000047889 2 1 1 80 5 16847059 16847079 TAACTATGACAGGGAAAGGTG 57 16847119 16847688 TGGATCATGACAGAATTCCAG 58 NA Rattus norvegicus 81 Tmem89 ENSRNOG00000031141 ENSRNOT00000049240 1 1 1 60 8 117661265 117661283 TAAGGTGGCTAAGGGTCAG 58 117661694 117661712 TCGTTTCCAGTGTTTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Syap1 ENSRNOG00000004304 ENSRNOT00000006584 2 1 1 80 X 33559677 33560134 AATCAAGAGGACGAAGAGGA 58 33560175 33560195 TAAGTTACAGGCATCAAAGGC 59 NA Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000064635 2 1 2 135 15 38097013 38097031 TCTAAGGGAACCTCTCCGT 59 38097321 38097339 CTTGGAAAGACACAGTCCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem202 ENSRNOG00000026112 ENSRNOT00000030199 3 1 1 80 8 64304994 64305214 CTGAAATACCAACAGCCTACC 59 64304934 64304953 AGCCTCACTCAAATACTGCT 59 NA Rattus norvegicus 81 Pear1 ENSRNOG00000014243 ENSRNOT00000019502 1 1 1 80 2 187116893 187116914 TCACTACTATTCCAACCCTAGC 59 187116751 187116853 CTGCCTGGAATCTTGTTAGG 58 NA Rattus norvegicus 81 RGD1565653 ENSRNOG00000007803 ENSRNOT00000010249 1 1 1 60 8 119285694 119285715 CCACAAGACCACTATCTTTACG 59 119285736 119285754 GTGCTTCAGTTCGAACACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 1 1 1 80 X 23680150 23680170 CCACATACTTGCCACTTATGC 60 23680209 23682331 GTAAAGAGGCCACTGAAATCAC 60 NA Rattus norvegicus 81 AABR07006258.1 ENSRNOG00000028444 ENSRNOT00000039369 1 1 1 60 1 226252402 226252422 GAAGAAATCATCTAGGCGTCC 59 226252442 226252462 GGTCAAACGGCTGAATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 3 2 2 83 3 110552679 110552697 GACCCTCTGTGACATCCAC 60 110552083 110552633 CTTTGACATCACACCTTCGG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 3 2 2 80 5 136074065 136074896 AGACTATTGGGATCCTGGC 59 136074003 136074021 ACATCAGGCTGTGAATCAC 58 NA Rattus norvegicus 81 Kbtbd11 ENSRNOG00000012333 ENSRNOT00000016420 2 1 1 67 16 79698553 79698572 GGATGGTACCATCTACTGTG 57 79698505 79698523 CCTCAGTGTCCTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686660 ENSRNOG00000049480 ENSRNOT00000071063 3 1 1 60 1 170205993 170206013 ATCTTGGTTACTAAAGCCCGT 60 170206035 170206053 CCACGACTTTCAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crabp2 ENSRNOG00000022101 ENSRNOT00000025183 1 1 1 80 2 187325746 187325767 ACGGAGATTAACTTCAAGATCG 58 187325805 187326015 CCATTTCACCAAACTCTTACAG 58 NA Rattus norvegicus 81 Smcp ENSRNOG00000009326 ENSRNOT00000012371 3 1 1 125 2 192776116 192780486 CCTGATCAGAAACTCCAACTC 59 192776011 192776029 GTGATTTCTGCAGACAGCA 59 NA InUTR Rattus norvegicus 81 LOC686143 ENSRNOG00000023511 ENSRNOT00000032698 1 1 1 80 2 193184722 193184743 ATGTCAAATACCAAGTTCCGTG 59 193184526 193184655 CTGGACATTTCACATAAGTCTGG 60 NA Rattus norvegicus 81 Olr1246 ENSRNOG00000049805 ENSRNOT00000073541 2 1 1 60 8 42339179 42339200 TTATGTACCTAAAGCCCTCCTC 59 42339220 42339239 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk1ip1 ENSRNOG00000016935 ENSRNOT00000022714 3 1 1 60 1 211195604 211195626 GAGACATCAAGACTCTAACTCAC 59 211195566 211195587 GTATTGTGTCCTTGTTGTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk3 ENSRNOG00000020465 ENSRNOT00000027759 1 1 1 80 15 34474045 34474291 TCTTCTGTCAAGTTATGGCTC 58 34473985 34474004 CACAAATCCTAGGTTCTCCA 57 NA Rattus norvegicus 81 Nmb ENSRNOG00000011011 ENSRNOT00000014639 2 1 1 80 1 142723130 142723148 ATCTGCTCAGGATCCTCCT 60 142721518 142723086 GCCTCCTGTACTGGATTGG 60 NA Rattus norvegicus 81 Rn60_2_0072.1 ENSRNOG00000050870 ENSRNOT00000074476 1 1 1 60 2 7230420 7230440 GGACAACTTTGCTTTACATGG 58 7230380 7230401 ATCTGATTCTCCTCTCAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681,ENSRNOT00000088131 3 2 2 80 2 170286474 170286496 GAATTACGGGTCATTAGACACTG 59 170285388 170286436 GTGACTTGTGCATCATATGGG 60 NA Rattus norvegicus 81 Id4 ENSRNOG00000016099 ENSRNOT00000021550 2 1 1 268 17 16694812 16694830 CTACATCCTGGACCTGCAG 60 16693618 16693637 TAATTTCTGCTCTGGCCCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ak8 ENSRNOG00000012761 ENSRNOT00000017029 1 1 1 80 3 7341750 7390753 CTACAGTCCCAACAGGGTG 60 7390797 7390815 GGGTCTGTCCTTCTCAGTG 59 NA Rattus norvegicus 81 Spata13 ENSRNOG00000013707 ENSRNOT00000018407 1 1 1 80 15 41048587 41050457 GCCATCAATGAGCTCATCAG 59 41050500 41050518 TTCCTGGTCATCCATGGTC 59 NA Rattus norvegicus 81 Itpr3 ENSRNOG00000052795 ENSRNOT00000090925 3 1 1 80 20 5688295 5690755 GAGATCCTGCAGTTCATCC 58 5690797 5690817 CACAAACTCCTTCTTGAAGAC 57 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770,ENSRNOT00000085527 1 2 2 80 5 136697900 136698047 CAAGTCTTCAGGGAAAGTGG 59 136698089 136698108 GTCACTCCACGAACAAACAG 60 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 2 2 2 80 1 176899029 176899050 GACACGTACCTTGATATTCCAC 59 176899090 176904992 ATGCAATGCTTCTTCCACAC 60 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 1 1 1 61 X 54821365 54821383 TTGGGAGATCAAAGCACCT 59 54821402 54822102 GGATTACTGGTATAGAGTTAACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Serpinb6b ENSRNOG00000016420 ENSRNOT00000059921 3 1 1 80 17 32774929 32774947 AAAGGGAACTGGAAGAAGC 58 32771560 32774886 AGGTTTCTCCTCATTCTTGG 57 NA Rattus norvegicus 81 Fbxo11 ENSRNOG00000016396 ENSRNOT00000021998 1 1 1 80 6 11663845 11664241 TGCATGACTTCTACAGATGTC 58 11663785 11663804 GATGGCACTTCTTAATGCAG 57 NA Rattus norvegicus 81 Ms4a3 ENSRNOG00000036625 ENSRNOT00000028493 2 1 1 80 1 227981225 227982441 GTTCCTCATCAAATGGCCTG 59 227981164 227981182 TGACTGAGAGCGAAATGGT 59 NA Rattus norvegicus 81 Olr1118 ENSRNOG00000030856 ENSRNOT00000046875 1 1 1 60 8 17860255 17860275 CCCTTATCTTCAGCTTGTTCC 59 17860215 17860236 ATGAGCAGATTTCCTAGTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000031935,ENSRNOT00000079850 1 2 2 80 17 10139646 10143947 TAGCTTAGAACTGGCACAGG 60 10143989 10144008 AGAAGACTGGCTTGGATCTG 60 NA Rattus norvegicus 81 Rn60_X_0594.8 ENSRNOG00000051097 ENSRNOT00000076662 3 1 1 60 X 58595032 58595051 TAATGAGGACTGGGACTTGG 59 58594991 58595014 GTCATCAGTATCTTAAGGATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt3 ENSRNOG00000061176 ENSRNOT00000083169 1 1 1 80 20 7160493 7160512 CACAGGACGTATGTGTACGT 60 7157249 7160452 TCTCTTCCTTCCGATGTTCAC 60 NA Rattus norvegicus 81 Atg2a ENSRNOG00000060707 ENSRNOT00000090100 2 1 1 80 1 221621575 221621594 GTCTCAGAGTACCTTCTCCA 58 221621637 221622017 CCTGTCTCATCCTTAGCCT 58 NA Rattus norvegicus 81 Cyp7a1 ENSRNOG00000009488 ENSRNOT00000012819 3 1 1 80 5 19366457 19368328 ATAAGGAGAAGGAAAGCTGGT 59 19366397 19366418 AGATCCAAATTTCAGAGCACAG 59 NA Rattus norvegicus 81 LOC103692171 ENSRNOG00000054176 ENSRNOT00000083560 3 1 1 84 4 114815323 114815342 CAGTGAACTTGGTGACTTCC 59 114815389 114815553 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Olr92 ENSRNOG00000015811 ENSRNOT00000021169 1 1 1 60 1 168455723 168455741 TCCAAACACAGGTCATCAG 57 168455681 168455699 CAAGCAATCATCACCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 3 1 1 158 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524401 28524419 ATCGCTAGCAGGACAAAGG 60 NA InUTR Rattus norvegicus 81 Mrgprx4 ENSRNOG00000014242 ENSRNOT00000019061 3 1 1 60 1 103380072 103380090 GGCAGACTCCTTCTTCCTC 60 103380030 103380050 GAAGTTCATGATCCGCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpc ENSRNOG00000000493 ENSRNOT00000000586 3 1 1 90 20 7417370 7418918 ACGATTCTCCGTCTGTGAG 59 7418970 7418990 TGTTCTTCCATCCATTTCTGG 58 NA Rattus norvegicus 81 Gnb2l1 ENSRNOG00000049070 ENSRNOT00000072179 2 1 1 60 12 35906013 35906032 TACCAAGGATGTGCTGAGTG 60 35905972 35905991 AGATCCAGAGACAATCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptlc1 ENSRNOG00000010882 ENSRNOT00000014546 3 1 1 81 17 11866146 11874597 CACATTTGATGTCCATCTGGA 58 11874637 11874658 GCCATAGGAGTAAATGATAGCT 58 NA Rattus norvegicus 81 Rn60_17_0356.1 ENSRNOG00000045721 ENSRNOT00000074800 2 1 1 82 17 35435123 35435143 AAATGAAGGGATTCCTTGGAC 58 35435185 35437554 TTGTCAAGCCTATAAGGTCAG 58 NA Rattus norvegicus 81 Olr376 ENSRNOG00000013192 ENSRNOT00000017604 1 1 1 60 1 230629646 230629664 CTACGTCTGCATCATCAGG 58 230629688 230629706 GGCTTTCCACTTTCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2e3 ENSRNOG00000050690 ENSRNOT00000073122 1 1 1 80 8 64797617 64797878 CTCTTCAAACCTGAAACACGA 59 64797557 64797575 CTTAAGCATCACCTGGGAC 58 NA Rattus norvegicus 81 Rn60_X_0595.2 ENSRNOG00000051308 ENSRNOT00000076448 1 1 1 60 X 58804730 58804751 TTTAGATTCAGGAAAGGCAGAC 59 58804691 58804712 TTCTACATTCTCAAGAGTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cts8 ENSRNOG00000040000 ENSRNOT00000061486 3 1 1 80 17 3385912 3385932 CTGATCCCAGTTTGGATTCTG 59 3385974 3386262 TCTGTCCTTCTTCCTCCAG 58 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839,ENSRNOT00000064153 1 2 2 80 1 86961746 86961765 CATCTGCCACTACTTCATCC 58 86961806 86966513 TCCAGAGTGTCAATATTCTGC 58 NA Rattus norvegicus 81 Pnma2 ENSRNOG00000009815 ENSRNOT00000013001 1 1 1 80 15 43586282 43586579 ACATAAACAGGAGTCCTTGC 58 43586622 43586640 TAATCAGTGGGTAGGTGGT 57 NA InUTR Rattus norvegicus 81 Insig2 ENSRNOG00000002478 ENSRNOT00000003391 2 1 1 80 13 37279646 37279664 CCAGATGTGATCACCAGCA 60 37271797 37279603 TAGTCCAATCACAGCTGAGG 59 NA Rattus norvegicus 81 Fam122a ENSRNOG00000051051 ENSRNOT00000076544 1 1 1 60 1 242373357 242373375 ATGCAGATAAGCCACTCCT 59 242373315 242373333 ATTTCTCCACGTCGTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema3c ENSRNOG00000006526 ENSRNOT00000009132 2 1 1 80 4 14324422 14324440 GAATGTGCTCCCAAGTCTC 58 14321179 14324380 CAGTTTAACCTCCTTCCTCCT 59 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 3 2 2 83 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347596 TCTCCTTGTCCCTTCAATACAG 60 NA Rattus norvegicus 81 Prl7a4 ENSRNOG00000029126 ENSRNOT00000040600 2 1 1 80 17 39096716 39096737 GACTGTTAAATAATGCCACCAG 58 39096775 39097547 CATTGACTGTATATTTCCTGCG 58 NA Rattus norvegicus 81 Nrn1 ENSRNOG00000050767 ENSRNOT00000073967 1 1 1 95 17 27969343 27969361 GACTGTTTGCTCAAGCTGG 60 27926265 27969284 ATCCTCCCAGTATGTGCAC 59 NA Rattus norvegicus 81 Zfp777 ENSRNOG00000033639 ENSRNOT00000038517 2 1 1 92 4 77700169 77704260 GTCTCTATGGACTATGCAATATCC 59 77700100 77700118 CTCAGAGTCCTCTTGCTCC 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 2 2 2 80 1 205734235 205734255 AAAGATGCTCCTTGTGAACTG 59 205734295 205736861 GCTATTCTGACTGCTCATCTG 59 NA Rattus norvegicus 81 Rn60_17_0453.2 ENSRNOG00000060574 ENSRNOT00000077821 1 1 1 80 17 45211090 45211109 TAATTCACAGGAAGGCAAGG 58 45211149 45211318 TATGTTTGTCTCCTGGTAACAG 58 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000068085 3 1 2 151 18 29191787 29191805 ACCTTATCCACAACAGCCA 59 29191917 29221868 AAATGTACACTGTGGTCTTAGG 58 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 1 2 2 80 1 243386253 243386916 CACCGGTCTCTATGTATGTCC 60 243386955 243386976 TTCGAATCTTTATTCCCATCGC 59 NA Rattus norvegicus 81 Zfp161 ENSRNOG00000016719 ENSRNOT00000022396 2 1 1 151 9 117737828 117739078 CTGCTTATATCTGGCTTGCC 59 117741035 117741055 CAGCGTCTTATGATCATCGTC 59 NA InUTR Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 3 1 1 92 1 81501830 81501848 ATTCAGCTACAGCAGTGCA 60 81501904 81502214 ATACGCACTCTCATTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000036549 1 1 2 105 7 115978561 115981669 TGGAGCTAGCTGTAACACAG 60 115978475 115978493 ATGATGACACAGTGGGTGG 60 NA Rattus norvegicus 81 Pml ENSRNOG00000008400 ENSRNOT00000043434 1 1 1 80 8 63031841 63031859 ATTCCTCGACAGTACTCGC 59 63020591 63031798 CAGTAGATGTTAGTCTGCGC 59 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675,ENSRNOT00000014030 3 3 3 80 4 156412930 156412951 GAGTATCTGGAACAGTCTGAGG 60 156412454 156412890 TTCATCGTACCATCGGTCAG 60 NA Rattus norvegicus 81 LOC100360439 ENSRNOG00000029560 ENSRNOT00000043110 2 1 1 75 12 13461896 13461915 GATATGATCCGGGAGGTGTG 60 13461840 13461858 TGTCCTTGGACACCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr736 ENSRNOG00000052729 ENSRNOT00000080981 2 1 1 60 3 79017631 79017653 CTCCTCAATCCTCTCATCTACTC 59 79017593 79017614 GATTCTTCATGGCTTTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr46 ENSRNOG00000031171 ENSRNOT00000000552 3 1 1 81 20 5453145 5454481 CTCTCGAACTGGGAGACAC 60 5453082 5453101 CATGAGCTTCTTTGTCACCC 59 NA Rattus norvegicus 81 Them6 ENSRNOG00000005929 ENSRNOT00000007773 1 1 1 60 7 115956851 115956870 AGTAGTACAGCACTTGTGCA 59 115958529 115958547 CTTCAAGTCTTCTGGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386,ENSRNOT00000084777,ENSRNOT00000087120 3 3 3 88 4 7217200 7217220 AATCCTTGAACAAGGAGTGGA 59 7212054 7217150 CATGTAATCGTGCAGGCTG 59 NA Rattus norvegicus 81 Nipsnap1 ENSRNOG00000008374 ENSRNOT00000011158 2 1 1 81 14 85127725 85127743 CACCTGGATGAGGACTACC 59 85127788 85132179 ATAGGTGTACTGCCTGGTC 59 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 2 2 2 106 1 243518367 243542071 CAGTGGCAGATGAAGACCT 59 243542141 243542159 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Olr132 ENSRNOG00000029051 ENSRNOT00000050248 2 1 1 60 1 169074683 169074704 CGGATCTTGGAGTAACATTGAC 59 169074722 169074743 TGATTTAACCACAGTACACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cstb ENSRNOG00000001201 ENSRNOT00000001593 2 1 1 81 20 10966662 10967167 CTTCATCAAGGTTGATGTCGG 59 10966601 10966621 CAAAGGCTTGTTCTCATGAGG 60 NA Rattus norvegicus 81 Mir433 ENSRNOG00000036497 ENSRNOT00000054605 2 1 1 60 6 133712348 133712368 GGTGAGCCTGTCATTATTCAG 59 133712390 133712408 GCCCATCATGATCCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3580 ENSRNOG00000048556 ENSRNOT00000070841 2 1 1 60 X 151295663 151295684 CCTGCTTGTACTTATTCTGGTG 59 151295624 151295647 TACTCTACTCATACTACCCTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910672 ENSRNOG00000049310 ENSRNOT00000064455 1 1 1 60 2 115093067 115093088 GACCAAGGGAAAGTATCATCAG 59 115093106 115093127 TAAGAGGATTCAACATAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565368 ENSRNOG00000050630 ENSRNOT00000047820 1 1 1 60 8 45561862 45561880 CATGTTTGTGATGGGTGTG 57 45561903 45561922 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm6 ENSRNOG00000013053 ENSRNOT00000017892 2 1 1 80 1 234514265 234514283 TCCGGAGAAACAAACACCA 60 234504912 234514224 AGGTTCTAAACCTATCTGGCTG 60 NA Rattus norvegicus 81 Usp29 ENSRNOG00000015956 ENSRNOT00000055721 3 1 1 81 1 69995418 70003525 TAGAAACCTGGGACTTGGG 59 69995355 69995374 TATGAGGTTGAGTCCTCGTC 59 NA InUTR Rattus norvegicus 81 Vps18 ENSRNOG00000013689 ENSRNOT00000018717 1 1 1 81 3 111097630 111097648 ATGAGGACTCATTGTCCCG 59 111097690 111098768 GCATTTACATACCCAGAATGGG 60 NA Rattus norvegicus 81 Rn60_1_1855.1 ENSRNOG00000051128 ENSRNOT00000076828 3 1 1 84 1 178475075 178475470 GAAGAAGAGACGACCAAGAG 58 178475010 178475029 GAAATGCACCATTAGGACAC 57 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000048344 ENSRNOT00000072062 1 1 1 60 8 42018250 42018268 TCTTCTATGGATCTGGGCT 57 42018292 42018310 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcdh ENSRNOG00000003307 ENSRNOT00000004570 2 1 1 80 19 26002950 26002968 GCTCACTGAGATCACACTG 58 26002552 26002907 ATTTCTGGAGTAGCCTTGTC 57 NA Rattus norvegicus 81 Arhgap31 ENSRNOG00000003088 ENSRNOT00000004138 2 1 1 80 11 64677894 64689990 CTATGAGAAATTCACGGAAGC 57 64690031 64690050 AGCTCCTGGATAACATTCTG 57 NA Rattus norvegicus 81 Glmp ENSRNOG00000019281 ENSRNOT00000026153 3 1 1 83 2 187700449 187700467 AACTTCTGTGCCTTCAACC 58 187700514 187700632 AAGCATTGACCAGCAAAGG 59 NA Rattus norvegicus 81 Scd2 ENSRNOG00000046005 ENSRNOT00000075397 2 1 1 80 1 264063369 264063387 CCACAGGACTTACAAGGCT 59 264063430 264065131 TACACATCGTTCTGGAATGC 58 NA Rattus norvegicus 81 H2afb3 ENSRNOG00000029736 ENSRNOT00000043727 1 1 1 60 X 88602402 88602420 GACTTGGCAGTCTACAGCA 60 88602442 88602462 GTGAGATGGTGATGAATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218,ENSRNOT00000067037 3 2 2 81 13 88638291 88638309 TAACAAGACTGCTGAGGCC 60 88637361 88638248 TTGGACTGACCTTTCATCCTC 60 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 1 2 3 80 5 48057257 48058373 AGAAACGTCAGATGTCATTGG 59 48057197 48057215 CCGAAAGTCTCAACTCCAG 58 NA Rattus norvegicus 81 Zpld1 ENSRNOG00000039517 ENSRNOT00000060577 2 1 1 80 11 47948645 47948665 TGGATTATTGCTACACAACCC 58 47948705 47957054 GATCTTTGTCACAGCTAAGGA 58 NA Rattus norvegicus 81 Nhlh1 ENSRNOG00000005166 ENSRNOT00000006862 3 1 1 195 13 90440089 90442857 AGAGTCCTTCTAGGCTCCA 59 90439912 90439930 AGTTGAGCATCATGGTGGA 59 NA InUTR Rattus norvegicus 81 Rn60_X_0632.2 ENSRNOG00000051148 ENSRNOT00000076552 1 1 1 60 X 62517143 62517161 TAAATGGCGGAGGAGATGG 59 62517182 62517203 GTAAAGCCAAACTCAAATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jade3 ENSRNOG00000039837 ENSRNOT00000061140 3 1 1 81 X 1939421 1939442 GCTATGACCTAGATGACATGGA 59 1935726 1939379 TCAATTGGGCCATAACCCA 59 NA Rattus norvegicus 81 AABR07019903.1 ENSRNOG00000040105 ENSRNOT00000061683 3 1 1 80 13 6712698 6712718 TTTGGACTACTGAAGGCTCAG 60 6712596 6712659 AGTCTGTTTCCTTGAATTTCCG 59 NA Rattus norvegicus 81 Slc15a2 ENSRNOG00000002305 ENSRNOT00000003189 2 1 1 80 11 66935108 66935691 CATGAAAGCTGTGCTGACC 60 66935735 66935753 AAGGCATGGTAGACAGAGG 59 NA Rattus norvegicus 81 AABR07020786.1 ENSRNOG00000039928 ENSRNOT00000049137 2 1 1 87 13 40300458 40300476 CTACAGCAGATCCTCGGAC 59 40300527 40300546 CTAACTTACCACTTGGTCGC 59 NA DesignNoJunction Rattus norvegicus 81 Bmf ENSRNOG00000007529 ENSRNOT00000010381 2 1 1 86 3 110307446 110319512 ATATGCAACAACACCAGCA 58 110307378 110307396 TTTCTCGTCTGTTCAAGGC 58 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 3 2 2 90 17 38712548 38713753 CCCAACAGTTCCAACTGGA 60 38712476 38712494 ATTTCAGCCCACAGATGGT 59 NA Rattus norvegicus 81 Gnpda1 ENSRNOG00000047213 ENSRNOT00000071560 2 1 1 80 18 31481916 31483453 GATGCTAAAGAGGTGATGATCC 59 31481857 31481876 GTTCACACCCTCTTCAATGG 59 NA Rattus norvegicus 81 Prl2c1 ENSRNOG00000039058 ENSRNOT00000059738 1 1 1 82 17 38850115 38851000 CATCATCAACAGAATGCTTCAG 58 38850054 38850075 CATTGGATTTGAAGATTGGCAG 59 NA Rattus norvegicus 81 Ap1m1 ENSRNOG00000014454 ENSRNOT00000019350 1 1 1 80 16 19292241 19292263 CACAATATCCTTCATTCCACCAG 60 19291942 19292203 CAGATCAAAGGCTTCACATGG 60 NA Rattus norvegicus 81 LOC679565 ENSRNOG00000022709 ENSRNOT00000029408 1 1 1 60 5 847593 847613 CTGAGTCTGAGGAAGAAGAGG 59 847553 847571 TCACTGCCACTCTGTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkar1a ENSRNOG00000049876 ENSRNOT00000071153 3 1 1 83 10 97951769 97952451 AGGAGAAATGGATGTGTATGTC 58 97952494 97952513 TAAATCAAAGCCAGCTCTCC 58 NA Rattus norvegicus 81 Olr185 ENSRNOG00000017344 ENSRNOT00000023283 1 1 1 60 1 169913508 169913531 CTTATATGCTGTCTTCCATCTTCC 59 169913548 169913568 ACACGTATTAAGAGCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 2 2 4 102 6 52663089 52663107 GACTGTCCAGTGATGAAGG 58 52663173 52667416 AATGAGCAGAACGCAAGAG 59 NA Rattus norvegicus 81 Copa ENSRNOG00000006247 ENSRNOT00000008518 1 1 1 80 13 90501736 90501756 TACACATGGCTTAGATGAGGA 58 90501794 90502017 GGATCAATATCTGGGATTGTCTC 59 NA Rattus norvegicus 81 LOC498122 ENSRNOG00000048861 ENSRNOT00000071453 3 1 1 156 11 86303221 86303239 ACTACTATGTCCATGGCGA 58 86300358 86300376 ATGAGGGTGTGCTTCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tcea1 ENSRNOG00000022323 ENSRNOT00000010893 1 1 1 80 5 14514105 14514123 GTGCAAACTCGTAGTGCTG 60 14512552 14514061 TCAACAGAACTTCCACCGA 59 NA Rattus norvegicus 81 Rerg ENSRNOG00000027592 ENSRNOT00000030850 3 1 1 88 4 171072453 171072472 AATCAACCTACCGACACCAG 60 171070868 171072402 CTGGATGGTGTCTTCCTGG 60 NA Rattus norvegicus 81 Selplg ENSRNOG00000000699 ENSRNOT00000000888 1 1 1 78 12 48578423 48578441 AAAGGCAGAGACCTCACAG 59 48578509 48578527 TGAGGTCTCTGCCTTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 2 2 2 118 2 188657365 188657383 CTTCGAGTTCTTGCCTGGA 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 C2cd3 ENSRNOG00000017608 ENSRNOT00000023802 3 1 1 80 1 165452552 165452571 CTATGGAGAGTCTGATGCAC 58 165452613 165453194 ACATTGGGATCAGTGATCCT 59 NA Rattus norvegicus 81 Prkdc ENSRNOG00000025028 ENSRNOT00000035247 3 1 1 80 11 89459587 89463676 GTTACATCTGACGAAGCACTG 59 89459527 89459547 TATTTGTCCTCCCAGAGATCC 59 NA Rattus norvegicus 81 Arl6 ENSRNOG00000001689 ENSRNOT00000002293 1 1 1 80 11 42875530 42875550 GCAGTGACTTCTGTGAAAGTG 60 42875589 42878985 ATCACTAGCACAAATATGCCAC 59 NA Rattus norvegicus 81 Trim41 ENSRNOG00000002388 ENSRNOT00000003246 1 1 1 80 10 34161497 34161516 TAGGAAGCATCTAGAGGCTG 58 34158402 34161455 GACTTCATCTGGCTCTTCAG 58 NA Rattus norvegicus 81 Rnf14 ENSRNOG00000045637 ENSRNOT00000075159 2 1 1 80 18 31457053 31458173 CTCCTGGTCAGGTCAAAGAG 60 31458213 31458234 GATCCAAAGTAGACTGGAGGAG 60 NA Rattus norvegicus 81 Zfand5 ENSRNOG00000018107 ENSRNOT00000024583 3 1 1 89 1 238848203 238850289 AGAGCCAGTTGTCACTCAG 59 238850342 238850360 TTTGGTTTGGGCAACTCAG 59 NA Rattus norvegicus 81 Olr1185 ENSRNOG00000039892 ENSRNOT00000061271 2 1 1 60 8 21164813 21164833 AGTTGCTTCACTGATGTACAC 59 21164855 21164873 CAGGCTGTAGATGAAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmn ENSRNOG00000029860 ENSRNOT00000050660 2 1 1 81 15 35152092 35152556 CACTGGAAGCTCAATGACAG 59 35152030 35152048 TTCCACAGGGATGATCTGC 60 NA Rattus norvegicus 81 Epm2aip1 ENSRNOG00000043006 ENSRNOT00000056050 2 1 1 60 8 119524778 119524798 TCTGACCATTATCAACCTGAC 58 119524819 119524838 CAGAATTGCCGACATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 2 2 2 82 14 88573311 88573329 AGATGACTCTGCTGAGGAG 58 88573375 88573498 CATCCTTCAACTCCAGCTG 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512,ENSRNOT00000087291 2 2 2 80 17 42921196 42921927 TCAACAGGACTCAGACTAAGG 59 42921136 42921156 ATGACTGCAAGTCTTTGAGTC 59 NA Rattus norvegicus 81 Sec13 ENSRNOG00000010628 ENSRNOT00000014377 2 1 1 81 4 145693865 145693886 AAGTCATTATCTGGAAGGAGGA 59 145693410 145693824 ACAGAGTTCACTGAGGAGTC 59 NA Rattus norvegicus 81 Olr1124 ENSRNOG00000046796 ENSRNOT00000050430 1 1 1 60 8 18796204 18796223 AAATGCCATCATCAGAAGGA 57 18796246 18796264 ACCAACAAATGAGACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpysl2 ENSRNOG00000009625 ENSRNOT00000012996 2 1 1 80 15 43487537 43496170 GAAGAAGGGAACTGTGGTG 58 43487475 43487496 CAGTTCTTGCTCCAATAATGAG 58 NA Rattus norvegicus 81 RGD1559536 ENSRNOG00000039250 ENSRNOT00000060113 3 1 1 83 X 42952703 42953619 GTTCAGGCGTCCAGTAGAG 60 42953666 42953684 CCATTGGTTGCACAGACTG 60 NA Rattus norvegicus 81 Olr818 ENSRNOG00000049389 ENSRNOT00000007229 1 1 1 60 4 72603581 72603601 CTGGTGGTAATGTCCTATGAC 58 72603623 72603641 TGACAGAGTATCGGAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr148 ENSRNOG00000016993 ENSRNOT00000022789 1 1 1 60 1 169305662 169305681 TCAACCATACTGTCATAGCC 57 169305704 169305722 ACAATAGCCACACTACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox7 ENSRNOG00000012049 ENSRNOT00000016503 1 1 1 80 15 47293951 47293969 GATGAGAGGAAACGTCTGG 58 47294013 47297511 CTTCCATGACTTTCCCAGC 59 NA Rattus norvegicus 81 Lyrm2 ENSRNOG00000043105 ENSRNOT00000065926 1 1 1 80 5 48048398 48048417 GATTCTGACCGGAAATACCT 57 48048460 48048850 GATTGTATCCTCCTCGGTG 57 NA Rattus norvegicus 81 Tmem79 ENSRNOG00000019414 ENSRNOT00000026414 2 1 1 82 2 187704360 187704378 TGCTTTCCACCTATCTGCC 60 187702399 187704317 GTATATCAGCCGAGATATGGCA 60 NA Rattus norvegicus 81 Hmbox1 ENSRNOG00000013326 ENSRNOT00000038336 3 1 1 80 15 48268740 48278050 AATTAATGAGGAGGGACAGCA 59 48268680 48268699 CAACTGCTTGGGAAATCCTC 59 NA Rattus norvegicus 81 Hdhd3 ENSRNOG00000015195 ENSRNOT00000020380 2 1 1 189 5 78359254 78361538 CAGGATCTTGTGCTGAAAGAC 59 78359085 78359103 TCAGTAGACGCATCTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC681338 ENSRNOG00000032947 ENSRNOT00000047517 1 1 1 60 9 60923371 60923389 AACTTACGTGCCTGTTACC 58 60923329 60923350 TTAGTTCTCATCCACTTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC121415.1 ENSRNOG00000007402 ENSRNOT00000009702 1 1 1 60 2 178212696 178212715 AGAAGGCAAAGAACTCTCAC 58 178212655 178212673 GCCATGTGAATCTCAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 2 1 1 71 15 4130907 4131039 ACAACTCCAGCAAAGAAGG 58 4131074 4131092 ATCTTCATCCTCATCGCGG 60 NA DesignNoJunction Rattus norvegicus 81 Cry1 ENSRNOG00000006622 ENSRNOT00000009124 2 1 1 80 7 24622842 24623175 GGAGACTATATTAGGCGTTATTTGC 60 24623213 24623231 TTCTGGTGCATTCCAAGGA 59 NA Rattus norvegicus 81 RGD1563917 ENSRNOG00000017273 ENSRNOT00000029635 1 1 1 80 9 92765585 92765603 ACCAAGCTGTTTCCTTTCC 58 92764577 92765541 GGCTTCGTAAGAATCAGCA 58 NA Rattus norvegicus 81 AABR07018269.1 ENSRNOG00000031720 ENSRNOT00000041154 3 1 1 81 15 49666827 49666845 CAAAGCTGACCAAATGGCA 59 49666145 49666782 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Mapk13 ENSRNOG00000000515 ENSRNOT00000000621 2 1 1 80 20 6023749 6023904 GTCTAAAGTACATCCACTCAGC 59 6024506 6024525 GCTCACAGTCTTCATTCACG 59 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 3 2 2 80 1 86979515 86980096 TAAGCACTCAGATCCTCGTC 59 86980139 86980157 TAGAGCTGGTTCACCACAG 59 NA Rattus norvegicus 81 LOC102546937 ENSRNOG00000049468 ENSRNOT00000044160 2 1 1 80 19 28594228 28594250 CAACTTAGTGATGGAGAACACTG 60 28593537 28594190 AGCAGGTTTCTAGAGAAGGTC 59 NA Rattus norvegicus 81 Il25 ENSRNOG00000016804 ENSRNOT00000022563 2 1 1 94 15 33596779 33598966 AGCTATGAGTTGGACAGGG 59 33599023 33599042 GATCCTGTCTGTAGGCTGAC 60 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638 3 1 2 112 13 90704016 90704034 GAAGGTGGAGGAAGAAGGG 59 90703281 90703941 GTTTGCCTGTAACCTTGGAC 60 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 2 1 1 85 16 70906206 70906224 TCCTCCTCATCCTCTACCC 59 70906270 70907482 CAGGATAGAATTCATCCCTGGA 59 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967,ENSRNOT00000087964 1 2 2 80 13 96141614 96141637 GAATGAATACACCTCATCTATCGG 59 96141674 96147412 CCACCATAAGCGAATTCTCTG 59 NA Rattus norvegicus 81 Ubn1 ENSRNOG00000003019 ENSRNOT00000061236 3 1 1 80 10 10714341 10714361 TGCAGTTTAGACAAGCTTCAG 59 10713670 10714299 TCAACTTCCGCTTCTTTGG 58 NA Rattus norvegicus 81 Noc3l ENSRNOG00000013965 ENSRNOT00000019056 1 1 1 80 1 257488721 257488741 GTTTAAGGACATCACTCCCTC 58 257488469 257488682 TGGGTTTCTTTACGAATCTTGG 59 NA Rattus norvegicus 81 Fntb ENSRNOG00000007660 ENSRNOT00000010588 3 1 1 80 6 99927191 99935683 AGAGGTGGATGTAAGAAGTGC 60 99935725 99935743 CCTTCGAAGAGGTCAGGAG 59 NA Rattus norvegicus 81 Dtwd2 ENSRNOG00000059142 ENSRNOT00000088900 2 1 1 80 18 43905158 43905176 CATATCTGCCAGTTCGTCC 58 43901814 43905114 GCAACACTTTGCTTTCCTC 58 NA Rattus norvegicus 81 Defb15 ENSRNOG00000048359 ENSRNOT00000058066 2 1 1 72 16 75107887 75107905 CCTTCAGGTCATGAAGACG 58 75105467 75107851 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Phyhip ENSRNOG00000049071 ENSRNOT00000074912 2 1 1 60 15 52156875 52156895 CCATCACAAGGAGTACTTCCA 60 52158272 52158292 GTAAGGCTGTAGTACATTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_20_0013.2 ENSRNOG00000053091 ENSRNOT00000079038 1 1 1 60 20 1578367 1578385 CTTTGCTTCATCACCACCA 58 1578325 1578343 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmxl1 ENSRNOG00000024671 ENSRNOT00000031812 2 1 1 80 18 44564456 44565184 AAGAATCTCAGCAGGAAACAG 58 44565226 44565244 AAGCAAAGAGAAGAGGCAC 58 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332,ENSRNOT00000083666 1 2 2 80 8 64490594 64490615 AAGGAGATGATTAAGTCTGGGA 59 64490654 64493331 GATAGTCTCTGCATGGTACTC 58 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 3 2 2 94 1 31871822 31880989 CAAGATCAAAGGGAAGTCCT 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000046414 ENSRNOT00000000211 2 1 1 80 3 159019761 159020248 ATCATGCAGGCTCTTCTATCC 60 159020288 159020308 CAAAGACAGCAGGATTCACAG 60 NA Rattus norvegicus 81 Fggy ENSRNOG00000008907 ENSRNOT00000011767 3 1 1 80 5 114546503 114560511 TCACGAAGGAAATTGTTCAAGG 60 114560551 114560570 AGACAACCAGAGAACAGGTG 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 3 2 2 80 16 83043406 83043426 CATGAGTATTCCAAGGAGCTG 59 83043122 83043364 TGCTGAACTCAACTTCTCG 58 NA Rattus norvegicus 81 Rn60_20_0009.7 ENSRNOG00000058671 ENSRNOT00000079140 1 1 1 60 20 1612357 1612380 CACTCAATCCACTTATCTACACTC 59 1612320 1612338 TTCCTATTCAGAGCACGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo4 ENSRNOG00000015622 ENSRNOT00000020925 3 1 1 80 2 53807332 53807354 GTTGAGTTTGATGTCTTCTGAGG 60 53803561 53807293 ACTCCAGATCCAATACCGTC 59 NA Rattus norvegicus 81 Rn60_15_0609.1 ENSRNOG00000029520 ENSRNOT00000045917 2 1 1 60 15 57187913 57187933 GTGAAAGTGAAGAGAAACTGG 57 57187873 57187894 CACTCCTTTGAAGAAACTACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4d ENSRNOG00000010181 ENSRNOT00000013536 2 1 1 80 4 156260369 156260389 TCTTATGAGAAGGTGGAAGGT 58 156260429 156262148 CCCAACTTTCCAGAATACCAC 59 NA Rattus norvegicus 81 Imp3 ENSRNOG00000017460 ENSRNOT00000023456 2 1 1 60 8 61607057 61607075 CAGAAGCTGCTGAAACAGG 59 61607099 61607117 CGTGAAGGTTATGGTCGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC288913 ENSRNOG00000049931 ENSRNOT00000072494 3 1 1 112 19 25356317 25358369 AGTTGAAGAAGAGCCTGGA 58 25356223 25356241 CTTTGATGCTCCCTTCAGC 59 NA Rattus norvegicus 81 Tmem199 ENSRNOG00000009896 ENSRNOT00000013220 2 1 1 80 10 65776468 65776951 ACAGAAATGGCCTCGAGAG 60 65776406 65776425 CCTTACCATGACGTACAGCT 60 NA Rattus norvegicus 81 RGD1560108 ENSRNOG00000032042 ENSRNOT00000051855 3 1 1 115 1 222673112 222673397 CTCACCAGACGATGACCTC 60 222673475 222673494 CCTCTTCCTTTACGTCTGGG 60 NA Rattus norvegicus 81 Olr767 ENSRNOG00000045977 ENSRNOT00000047051 3 1 1 60 3 102773650 102773672 GTCATCCTGATCTTAGTAACCAC 59 102773612 102773631 CCAACAAGAAGTACATGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 2 2 2 60 20 1889944 1889965 AACTCTTCATCTTCATGTCCCT 59 1889985 1890004 AAGGCCATCACTGTTAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ears2 ENSRNOG00000025353 ENSRNOT00000071946 2 1 1 80 1 192014506 192014524 TGTTTCTGTTCACCACAGC 59 192008457 192014462 TCGATTGTCATACCGAGGT 58 NA Rattus norvegicus 81 Icam4 ENSRNOG00000042078 ENSRNOT00000067741 1 1 1 80 8 22048070 22048202 AGGATCACTGCTTTCAAACG 59 22048243 22048263 GCATCTCAGAGTGTACTTGTG 59 NA Rattus norvegicus 81 Defb43 ENSRNOG00000038759 ENSRNOT00000059212 2 1 1 80 15 46196814 46201120 CCATACTTCCTCTGGCCAG 60 46201163 46201182 CTTTGCACTTCATCCTGCAG 60 NA Rattus norvegicus 81 Kcnh6 ENSRNOG00000008078 ENSRNOT00000010816 3 1 1 80 10 94226589 94226610 TTTCCTGAAACTTCAGTGACTC 59 94226651 94227424 GTAGCTTAGGGTCTGAGCA 59 NA Rattus norvegicus 81 Grin2b ENSRNOG00000008766 ENSRNOT00000011697 3 1 1 80 4 169752537 169873127 TGGCGGATAAGGATGAGTC 59 169752475 169752493 TGATGTTGAGCATGACGGA 59 NA Rattus norvegicus 81 Rab3d ENSRNOG00000011582 ENSRNOT00000015609 2 1 1 152 8 22926885 22926903 GGATCAAGCTGCAGATCTG 58 22926203 22926312 TAATCTGCGTAGCCCAGTC 59 NA Rattus norvegicus 81 Slc22a8 ENSRNOG00000018086 ENSRNOT00000024488 1 1 1 80 1 224813210 224813233 GTCTATATGATCTTCCGATTCCTG 59 224813269 224813778 CCATTCCACATTCAAGATAACG 58 NA Rattus norvegicus 81 Lce1l ENSRNOG00000042105 ENSRNOT00000065884 3 1 1 101 2 193165026 193165696 CTGAACAGATTTACAGACTTCCTC 59 193164948 193164967 TTTAGGAGTCTGGCACTTGG 60 NA InUTR Rattus norvegicus 81 Mir653 ENSRNOG00000036462 ENSRNOT00000054572 3 1 1 61 4 28658934 28658955 AACATTCTCTACTGAACCAAGC 59 28658894 28658915 CTTGCAATAGTGAAACAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr3c1 ENSRNOG00000014096 ENSRNOT00000044287 1 1 1 80 18 31732446 31733553 CATGCATGAGGTGGTTGAG 59 31732384 31732405 TCTGGGAATTCAATACTCATGG 58 NA Rattus norvegicus 81 LOC367117 ENSRNOG00000031132 ENSRNOT00000046322 2 1 1 80 8 86284747 86286967 GCAGCTGTGTTTATCAATGAC 58 86284687 86284706 GTGGTAGCACACTATTGTCC 58 NA Rattus norvegicus 81 Rasgrp2 ENSRNOG00000021098 ENSRNOT00000028646 1 1 1 80 1 221786643 221786662 TCGTACACAACTTCCAGGAG 60 221786705 221786924 TGTAGATGCCCAGGATCAG 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 3 3 3 81 2 231045156 231045177 GGTATCTTTCTCCAGAAGTCCT 59 231045219 231056620 ATGTAGAGGATGACGCCAC 59 NA Rattus norvegicus 81 Olr1020 ENSRNOG00000049559 ENSRNOT00000040812 3 1 1 60 7 7311021 7311041 CGGTTCTTAATGAGCATTCTC 57 7310981 7311002 GAGCTGCACAAGAATTATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563905 ENSRNOG00000049382 ENSRNOT00000071025 1 1 1 66 1 100676004 100676022 CTCTCCATTCTCAGGCTCG 60 100676055 100676073 CTTATGCCCATATGCCTGC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1563905 ENSRNOG00000049382 ENSRNOT00000071025 2 1 1 67 1 100676004 100676022 CTCTCCATTCTCAGGCTCG 60 100676056 100676074 CCTTATGCCCATATGCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Prl6a1 ENSRNOG00000017089 ENSRNOT00000022944 3 1 1 84 17 42708112 42708893 GTGTATTTCTGGAGGATGTGC 59 42708048 42708066 GTAAATGGTGATCGGTGGC 59 NA Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 2 1 1 60 20 1515615 1515633 CCACCTACCTGAAACCTCC 59 1515573 1515591 ATAACAGCAGCTACCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabp2 ENSRNOG00000018339 ENSRNOT00000071109 2 1 1 89 1 219333329 219333910 CACAGCAAATCAGTGGTGG 60 219333963 219333981 CAATCATGTCTGCCGTCTC 59 NA Rattus norvegicus 81 Olr1306 ENSRNOG00000039236 ENSRNOT00000060093 2 1 1 60 8 43283138 43283158 TGGTCTAGTGTCTCTTGTCTG 59 43283098 43283118 GATTGTGATTCGCGTATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss12 ENSRNOG00000015353 ENSRNOT00000021116 3 1 1 80 2 227697830 227700171 TGGGAATAAAGAGACCCTCTC 59 227700213 227700231 TTGTTCCCACCAATGATCC 58 NA Rattus norvegicus 81 LOC100912634 ENSRNOG00000032845 ENSRNOT00000064243 1 1 1 80 17 42849852 42850513 CCTTATACAACAGGACTCAGG 58 42849792 42849810 AGTCTTTGAGTCCAGACCA 58 NA Rattus norvegicus 81 LOC100910553 ENSRNOG00000049652 ENSRNOT00000074265 2 1 1 60 15 35534768 35534787 CCAAGGGAAAGTGTCATCTG 59 35534808 35534828 GATCAAAGGATTCAGCATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001099.1 ENSRNOG00000017963 ENSRNOT00000024149 2 1 1 116 1 37886580 37886598 ATGTGGCCGTTGATTTCTC 59 37886033 37886500 CAGCAAGACCCAAGAACAC 59 NA Rattus norvegicus 81 Fam98c ENSRNOG00000024036 ENSRNOT00000056964 1 1 1 81 1 88095580 88095935 TCAACAAGGTGCTTATGGGT 60 88095518 88095536 CTCTTCCAGGTAGGCATGG 60 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000043822 1 1 5 80 4 22156218 22157078 CAATGAACTTGATGCAAACGTG 60 22156159 22156177 ACAAAGTAGGGCCACTCTG 59 NA Rattus norvegicus 81 Jrkl ENSRNOG00000047133 ENSRNOT00000072420 2 1 1 60 8 11887615 11887633 CAAGCAGCTCTGATTCCAC 59 11887573 11887593 TACATGGACGGCTTCATAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hectd1 ENSRNOG00000006905 ENSRNOT00000008459 2 1 1 80 6 72563474 72565504 GTAGCAAAGACTCTGTTACGG 59 72563414 72563433 TCGAGCTTTATCCAATGGTG 58 NA Rattus norvegicus 81 Olr1418 ENSRNOG00000061794 ENSRNOT00000050448 3 1 1 60 10 44025799 44025822 GCTATCTATAACTACATGCTCCCT 60 44025762 44025780 ACACCACCATGTCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Obp1f ENSRNOG00000045757 ENSRNOT00000045436 2 1 1 80 X 45283226 45283245 TTGGACAGTGAATGTCAGAC 58 45282292 45283186 TCTACCAGAGTAGTCAGTAGTG 58 NA Rattus norvegicus 81 Cox14 ENSRNOG00000061425 ENSRNOT00000091207 1 1 1 60 7 141380424 141380442 TACCATTACCTCCAGCTGC 59 141380465 141380484 CTGAGGTCTTCTGCTCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cflar ENSRNOG00000012473 ENSRNOT00000016730 3 1 1 84 9 65563144 65563162 GGAACACCATGGCATTCAG 59 65568454 65569180 CTCTTCATGTATGTGCGGAG 59 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000048702 ENSRNOT00000071050 3 1 1 60 8 42833347 42833367 GTTTCTTGTACACAGTGATGG 57 42833386 42833407 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 1 1 2 60 20 1814896 1815078 GAAAGTATGAAAGCACTGAGTG 58 1814857 1814875 GGAGGTAACACGGTTATGG 58 NA DesignNoJunction Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 3 3 3 93 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738154 97738173 CAGACCATGACATTCAGCTG 59 NA Rattus norvegicus 81 Pus3 ENSRNOG00000012994 ENSRNOT00000017648 1 1 1 80 8 36767318 36767338 AGACAGACTTCCAACTATCAC 57 36767378 36767503 CAGGTCCAGAGAAATTACCTG 58 NA Rattus norvegicus 81 Olr1460 ENSRNOG00000046759 ENSRNOT00000040720 1 1 1 60 10 44805341 44805359 TACTTGCTCCTCTCACCTG 58 44805381 44805401 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1142 ENSRNOG00000045713 ENSRNOT00000050754 2 1 1 60 8 19274524 19274544 CAGCCTTTCATCTTTACCCTG 59 19274566 19274584 GCAGGTTTCCTATGGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar2 ENSRNOG00000021021 ENSRNOT00000028532 2 1 1 60 1 89269101 89269122 CTCTGCTATTCTACTTCTCCTC 57 89269062 89269080 AGTAGCAAACCTTTCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epcam ENSRNOG00000015667 ENSRNOT00000021135 3 1 1 80 6 11294719 11298023 GCTCAGAAAGACTGTGTCTG 59 11294658 11294676 AGTACACTGGCATTCACCA 59 NA Rattus norvegicus 81 Nol7 ENSRNOG00000017904 ENSRNOT00000024122 2 1 1 80 17 24018993 24019011 GGAACATGAACAACCTGCT 58 24019054 24019530 TTAGTCTGACCGACAGACTG 59 NA Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000024067 3 1 2 108 15 51757035 51757053 TTGCCTGACAATCTGTACC 58 51757124 51758436 CCATCACATTCTCTGTAGCC 58 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000027006 ENSRNOT00000035567 1 1 1 111 10 80953436 80953458 GACCTACTCGTGTGAGGTG 60 80953532 80953551 ACCAGGCTTTACAGAATCCT 59 NA Rattus norvegicus 81 Pigb ENSRNOG00000059622 ENSRNOT00000088562 1 1 1 80 8 79710365 79712419 CAGTGTTCAATTACTGATCTGG 57 79710306 79710324 AGGGAGTAAAGCCTTAGGT 57 NA Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000007662 1 1 2 60 3 66417567 66417585 CCAGGGTTATGAGATCGTC 57 66416042 66417544 GGTCATGTTTCCACTTCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 3 2 2 80 10 63753430 63753453 GAGTACATGAAGGAAGACTTTCTC 59 63753490 63756364 TTTATGCACATTCTCCTGGGT 60 NA Rattus norvegicus 81 Efr3b ENSRNOG00000012950 ENSRNOT00000068214 3 1 1 80 6 28404828 28405074 TGTCTTCATGAAGAAGCACTC 58 28404768 28404787 TGCTTCTGGATGTTTGTCTC 58 NA Rattus norvegicus 81 Prss35 ENSRNOG00000025184 ENSRNOT00000034683 1 1 1 93 8 94424127 94424145 GACACAGCAAGCTTCTCAG 59 94437772 94437790 AAAGACAGGGTCCATCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Smek3 ENSRNOG00000032858 ENSRNOT00000040923 3 1 1 71 X 57867538 57867557 CATCCATGTTTCAAGCACAG 58 57867987 57868008 AAGGTCTGAACATACTCAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Prl3b1 ENSRNOG00000017185 ENSRNOT00000023086 3 1 1 80 17 42776098 42777141 AACCATGCTTCTCTGGGAC 60 42776036 42776055 AATTTGGTGCAGAAGTCACC 59 NA Rattus norvegicus 81 Far2 ENSRNOG00000001851 ENSRNOT00000002528 2 1 1 80 4 182551792 182551812 AGATCTGATTCCAGTTGACAC 58 182551851 182552517 GTTGACTTAGGTCTATGAACGG 59 NA Rattus norvegicus 81 Zfp874b ENSRNOG00000051377 ENSRNOT00000077781 3 1 1 92 1 37861689 37863702 TGACATGAAGGAAATGCTGTC 59 37861617 37861636 TACAGATTCCACTGAGCAGG 59 NA InUTR Rattus norvegicus 81 Olr1158 ENSRNOG00000026232 ENSRNOT00000032963 1 1 1 60 8 19916795 19916816 CCAATGATGTCCTGCTTTACTG 60 19916756 19916778 ATCCCAGACAGAGGAATAATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 2 2 2 80 6 28710625 28710846 ACTTGTACAGGGAGGTGGA 60 28710563 28710583 TCTTCCATCATCAAAGGTGGT 60 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 1 2 2 80 9 61954438 61956559 GATTCCTCGTTCTAGTATAATGCC 59 61954381 61954405 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Adamts12 ENSRNOG00000018865 ENSRNOT00000025693 2 1 1 80 2 61282370 61282388 CCCAAGACACTGGTTTCCT 60 61282432 61292843 AACAGAGCACTCACTCCAG 59 NA Rattus norvegicus 81 Pdrg1 ENSRNOG00000008845 ENSRNOT00000012141 1 1 1 80 3 148490502 148490520 GTGATGGTTTGCTTTGGGA 59 148488502 148490458 GTGCTCCTGATCTTTCTGG 58 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 2 2 2 80 4 79923570 79924450 TTGGATGTTAATCCACAAGCAC 60 79924489 79924509 CTCTGGAGCAGCAATAAACAC 60 NA Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 3 1 1 81 3 147743573 147743592 ACATTGTGAAAGACCCTGTG 58 147744097 147744889 TGGTACAATTGCTTGAAGTCTG 59 NA Rattus norvegicus 81 Ncbp1 ENSRNOG00000023605 ENSRNOT00000030825 2 1 1 80 5 61764894 61765994 ATCTTCCTACAGCATCACCAG 60 61766036 61766054 AGGATCTAACTCTGCCGTG 59 NA Rattus norvegicus 81 Setx ENSRNOG00000013491 ENSRNOT00000017984 1 1 1 80 3 7717497 7720233 TCATCTCTATGAAAGCACAGG 58 7720275 7720293 CCACATTCTCTTCCAGCAG 58 NA Rattus norvegicus 81 Cdh17 ENSRNOG00000015562 ENSRNOT00000021612 2 1 1 80 5 25425820 25425840 TAGCGAGGATACTGCTATAGG 58 25425880 25429207 AGTGAATAACTCACAGTCAGG 58 NA Rattus norvegicus 81 Dhrs9 ENSRNOG00000058568 ENSRNOT00000080525 3 1 1 94 3 55638575 55641847 CAATGACAGCTTAAGGCGG 59 55641904 55641923 TTATTGGATCTGCCAGTCCT 59 NA Rattus norvegicus 81 Dcaf4 ENSRNOG00000008399 ENSRNOT00000011378 1 1 1 80 6 107023663 107023793 GCTTCAGTACAGGTTTGTCTC 59 107023832 107023853 CACTGTTGGTCCAATATGACTG 59 NA Rattus norvegicus 81 Coq4 ENSRNOG00000026691 ENSRNOT00000038602 2 1 1 80 3 8351352 8351372 GATCTAAGTAAGCTCCAGAGC 58 8351411 8356056 AGAGACTTTATTCGCATTCAGG 59 NA Rattus norvegicus 81 Pdzrn3 ENSRNOG00000057556 ENSRNOT00000090506 1 1 1 80 4 133720704 133720722 TTGCACATGGATATGCTCG 58 133719890 133720660 CTCATGCTTCTTCTGCTGC 59 NA Rattus norvegicus 81 LOC100364596 ENSRNOG00000026697 ENSRNOT00000039568 1 1 1 105 X 62282368 62282549 GTAAGAAGGCCCAAAGTGC 59 62282616 62282636 TCTTCTTTGTTGGTGGTACAG 58 NA Rattus norvegicus 81 Nt5c ENSRNOG00000003650 ENSRNOT00000004853 2 1 1 81 10 104053266 104053287 TGGGAGACCTCATTGATGAC 59 104053095 104053114 CAGCAGGTGAACAAGATGTG 60 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 1 2 2 80 3 138385450 138385470 CTTTCTTCTCACCCTGTTCTC 58 138384536 138385408 CCGCCTAACACTTAGATCC 57 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 3 2 2 80 1 219155228 219155247 GCAATTGAGTTCATCAACCG 58 219152521 219155185 CACCTGTTTGATGACCTGG 59 NA Rattus norvegicus 81 Actl6a ENSRNOG00000011553 ENSRNOT00000015460 1 1 1 80 2 119118954 119118974 ACAGAGTTGATGTTTGAGCAC 59 119119016 119121068 ACCATTAGCAAATGCCGTC 59 NA Rattus norvegicus 81 Actl6a ENSRNOG00000011553 ENSRNOT00000015460 3 1 1 80 2 119115574 119115745 CTGCCCTAAGGTTGATTTCC 59 119115787 119115806 CCATCGATCTCCATCATCGT 60 NA Rattus norvegicus 81 S100a1 ENSRNOG00000012410 ENSRNOT00000017000 3 1 1 88 2 189900800 189903086 TCCTGGATGTCCAGAAGGA 60 189900730 189900748 CTCCTGGAAGTCCACTTCC 59 NA Rattus norvegicus 81 RGD1566326 ENSRNOG00000045620 ENSRNOT00000051901 2 1 1 60 3 85545111 85545130 CATCAAGCACTCAAAGAGCA 59 85545150 85545171 CTTCTGATTGTTCTCCTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkk1 ENSRNOG00000018242 ENSRNOT00000025009 2 1 1 80 10 59604114 59604132 GTAGAGGTGACTGAGGAGG 58 59604174 59604617 CATAGACTTGACCAGGATCAC 58 NA Rattus norvegicus 81 Msh4 ENSRNOG00000010431 ENSRNOT00000014106 1 1 1 80 2 260080207 260080225 CCAACATCAGTGAGTTCCT 57 260078470 260080164 GCTGTGATATCATTCCTGCT 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000027895 3 1 4 81 15 34780560 34780578 TTTAAGGGACAGCTGTGGT 59 34780618 34781195 GACAGTGATTTCTCCATTACAGTG 60 NA Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 2 1 1 80 X 54294641 54294659 ACCCAATGGTACTTGAGGT 58 54294703 54295350 CCAATCCATTGGCTACAGG 58 NA Rattus norvegicus 81 AABR07030773.1 ENSRNOG00000050974 ENSRNOT00000075199 2 1 1 82 10 103565620 103565639 CCACAGCCAGTTACATTCAG 59 103565682 103568000 AAAGACAATTAGCCGAGTCTG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 1 2 4 80 1 267625418 267625437 ATCTACAGCATGAGGTTCTG 57 267625479 267627770 GATGATTTCATGCCTGATGC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 3 2 2 80 5 156301239 156301999 GACAGCAAGAACATAGCCAG 59 156302042 156302060 CATCCATTTCAGGGTGCTC 59 NA Rattus norvegicus 81 Bola1 ENSRNOG00000021185 ENSRNOT00000028767 3 1 1 166 2 198338793 198339082 CAAGTACAAAGCGGATGCT 59 198338645 198338663 CAGTTCCAGTACCTCAGGG 59 NA InUTR Rattus norvegicus 81 Crk ENSRNOG00000025792 ENSRNOT00000006407 3 1 1 60 10 63841134 63841152 AATGCCTACGACAAGACAG 58 63852454 63852473 TCTTCGTAACCTTTACCAGC 58 NA DesignNoJunction Rattus norvegicus 81 S100a6 ENSRNOG00000011647 ENSRNOT00000015612 1 1 1 80 2 190007981 190008290 CTCACCATTGGTGCTAAGC 59 190008331 190008352 TACTTCCTGATCCTTGTTACGG 60 NA Rattus norvegicus 81 Ebf3 ENSRNOG00000016102 ENSRNOT00000021702 3 1 1 80 1 209554207 209554716 GTGGAGTGAGCTGATAACC 58 209554145 209554163 AGGGTCACTTCAACAACTC 57 NA Rattus norvegicus 81 Vom1r22 ENSRNOG00000025949 ENSRNOT00000038190 2 1 1 60 1 61626105 61626123 ATCTCCACAGAGTTGGCAG 59 61626063 61626081 TGGTAGACACTCAGGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e1b ENSRNOG00000025480 ENSRNOT00000037527 1 1 1 80 17 10370730 10371379 TGTTCAAGGAAGGCATCCA 59 10370668 10370686 GTTTGGCAAGACTGAGCAG 60 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045,ENSRNOT00000083102 3 2 2 80 8 55128646 55129703 CAGATACAGACAGAGGAATGC 58 55128586 55128604 TATTGCTGCACAAGTGCTC 59 NA Rattus norvegicus 81 LOC680959 ENSRNOG00000030346 ENSRNOT00000045382 2 1 1 60 X 60391885 60391903 AATTAAGCGAAACTGGCGG 59 60391927 60391945 CTTGAATCTTCTCCGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M5 ENSRNOG00000033136 ENSRNOT00000052311 3 1 1 80 20 2039875 2039895 AGGACATTTCCAAGAATTCCC 58 2039666 2039833 AGACATGAGTGCCATCCTC 59 NA Rattus norvegicus 81 Gdnf ENSRNOG00000012819 ENSRNOT00000041288 1 1 1 86 2 56892573 56892591 GTAAGACGCTTCTCGAAGC 59 56892640 56909747 GCATATTGGAGTCACTGGTC 59 NA Rattus norvegicus 81 Zfp18 ENSRNOG00000003981 ENSRNOT00000005518 2 1 1 80 10 52336323 52341959 CTACAGGAGGAACAGTGGAG 59 52342001 52342020 TTTCCCATAGGTTTCCAGCA 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090,ENSRNOT00000077994,ENSRNOT00000019040,ENSRNOT00000089736 2 4 4 80 17 27498393 27498414 ACCGTAGAAGATCCAATAATCG 58 27498455 27500582 CTCTTCTGCCAAGTCTGTG 58 NA Rattus norvegicus 81 Rn60_X_0634.2 ENSRNOG00000051252 ENSRNOT00000076647 3 1 1 60 X 63329798 63329818 TTTGGGAGCACTTTGATAAGG 59 63329758 63329776 TCAGGGAAGCAGTACTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnbp ENSRNOG00000010239 ENSRNOT00000013884 3 1 1 80 4 119750485 119750504 CCTGACATCTGTTATCGCTG 59 119750269 119750442 GCAGTTATAGCAGGCATCC 59 NA Rattus norvegicus 81 Olr1315 ENSRNOG00000048263 ENSRNOT00000050312 1 1 1 60 8 43470009 43470027 CTATGACCGCTTTGTTGCC 60 43469967 43469988 TCTGTGGCTTATTATGACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r59 ENSRNOG00000030886 ENSRNOT00000047760 3 1 1 60 1 75166653 75166674 GGGTCATTTCTTAGCATTACCC 59 75166695 75166713 CCCACATCATGATGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr508 ENSRNOG00000053924 ENSRNOT00000080756 1 1 1 60 3 73838890 73838909 TTGATTTCCTCCCTTGTGGT 59 73838849 73838870 TGAGAACAGCTATGAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr264 ENSRNOG00000054146 ENSRNOT00000089570 2 1 1 60 1 172665150 172665171 TCCTTAAAGTCATCCTCTTCAC 58 172665111 172665130 TTCCCAGACATAGTCAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoo ENSRNOG00000046918 ENSRNOT00000073955 2 1 1 80 X 63542291 63544453 TGAAGATCGATGAGCTCTCAC 60 63544494 63544513 CTTCAAGTTGAGTCCTTGGC 59 NA Rattus norvegicus 81 Tipin ENSRNOG00000043068 ENSRNOT00000066973 3 1 1 82 8 69753493 69754151 CCTGATGAAGGATCAGGGA 58 69754194 69754215 GCATCTAGCTTGGGTATATTCC 59 NA Rattus norvegicus 81 Olr514 ENSRNOG00000046997 ENSRNOT00000040055 2 1 1 60 3 73949916 73949936 TTTATCCTCACAGCAGTTCTC 58 73949876 73949895 TTGAGAAAGCCTTGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 3 2 2 80 9 64520278 64520298 TAGAGATTGCACAAGATGGAG 58 64513776 64520236 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 Hbq1b ENSRNOG00000028114 ENSRNOT00000035459 3 1 1 81 10 15600506 15600525 TTCTCTGTCTGCTCTCAGTG 59 15600336 15600464 CAGACAGTGGCTAAAGAACTG 59 NA Rattus norvegicus 81 Pxdc1 ENSRNOG00000017093 ENSRNOT00000060143 1 1 1 80 17 30991113 30993373 GAGCATTTGTTTGAGAATGGTG 59 30993413 30993432 CAAGTTGGTGACGTAAGCTG 60 NA Rattus norvegicus 81 Drd4 ENSRNOG00000017927 ENSRNOT00000024137 2 1 1 103 1 214278693 214280198 TTTGTCTACTCCGAGGGTG 59 214280265 214280283 CACAGGTTGAAGATGGAGG 58 NA Rattus norvegicus 81 Drd4 ENSRNOG00000017927 ENSRNOT00000024137 3 1 1 103 1 214278692 214280198 CTTTGTCTACTCCGAGGGTG 60 214280264 214280282 ACAGGTTGAAGATGGAGGC 60 NA Rattus norvegicus 81 Nbeal1 ENSRNOG00000021525 ENSRNOT00000023678 3 1 1 80 9 67106009 67106030 CACTGATGAGATACTGAGTGTG 58 67106070 67106450 ATAATCACACTGCCATCCCT 59 NA Rattus norvegicus 81 Ptchd1 ENSRNOG00000003675 ENSRNOT00000044129 3 1 1 80 X 42595961 42608790 CATGCTAGGTCATGGATTATACG 59 42608827 42608848 TCTTTAACATGTTGGTCCTCTC 58 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786,ENSRNOT00000045686 1 2 4 80 5 115084462 115086881 AAATGGCAAAGTACCGAGAC 59 115084401 115084419 CAAAGAAGAGGTCCAGGGT 59 NA Rattus norvegicus 81 RGD1566120 ENSRNOG00000026596 ENSRNOT00000036822 1 1 1 80 10 39739421 39739442 ATACAAAGAACACCGAAGACAG 59 39739483 39743057 GCTCCCAATCCAAACAGTC 59 NA Rattus norvegicus 81 Trim13 ENSRNOG00000009075 ENSRNOT00000012035 3 1 1 131 15 41927567 41934488 GGAACAAAGGATGTGATGGAG 59 41934579 41934599 CTCTAAGAGCCCTTCTAAGCA 59 NA InUTR Rattus norvegicus 81 Olr1740-ps ENSRNOG00000059858 ENSRNOT00000072074 2 1 1 60 20 1826592 1826610 TACATGCAGTTCCCACCTC 59 1826634 1826652 GTAGGCGGCAAAGATTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 3 2 2 83 1 37736240 37736260 GGCAGTAAACACTTACTTGGA 58 37734735 37736196 ATAGGGAACCTGAACAACCT 58 NA Rattus norvegicus 81 Zfp322a ENSRNOG00000017318 ENSRNOT00000023268 1 1 1 81 17 44026312 44031287 GGTTCTTGTTAAGAAAGCCG 57 44031331 44031349 ATGTAGACAGACGACAGGT 58 NA InUTR Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889,ENSRNOT00000092189 1 2 2 80 10 40875373 40877726 TCCTCTACAGCATCAGAATCAC 60 40875314 40875335 TACATGTCTGTACATCCATCGG 60 NA Rattus norvegicus 81 Eps15l1 ENSRNOG00000013502 ENSRNOT00000018960 3 1 1 80 16 19142512 19142950 AGTCTTACTACAAGCAGGTGG 60 19142989 19143010 CTGACTTCTTCAGAAACAGTGC 60 NA Rattus norvegicus 81 LOC100910274 ENSRNOG00000048155 ENSRNOT00000050785 1 1 1 60 3 79187127 79187146 TGCTTTGTGCTATTTCTGCT 59 79187169 79187187 CCACCATGAGAAGATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf215 ENSRNOG00000004940 ENSRNOT00000006827 3 1 1 81 14 84369889 84369988 GTGTAGTCCGAGAGTTGGAC 60 84370030 84370050 AGCTTGGTGACATTTGAAGAG 59 NA Rattus norvegicus 81 Heyl ENSRNOG00000015318 ENSRNOT00000020929 2 1 1 93 5 140930962 140932062 GCGCAGAGGGATCATAGAG 60 140932118 140932137 CTGTTTCTCAAAGGCAGTGG 60 NA Rattus norvegicus 81 Lrp2 ENSRNOG00000056184 ENSRNOT00000082624 3 1 1 80 3 55740179 55740199 GTCTTCTGGAGTGACTTACTG 58 55739213 55740137 ACTGTCATGGACCACTCTC 59 NA Rattus norvegicus 81 Pkp3 ENSRNOG00000015152 ENSRNOT00000020864 1 1 1 80 1 213895616 213895711 CAAGTGTGAGGACAAGAGTG 59 213895752 213895772 GGTGGCATCTCATCATATAGG 58 NA Rattus norvegicus 81 Olr1750 ENSRNOG00000043481 ENSRNOT00000075060 2 1 1 60 20 1945708 1945729 AACTCCTTCTCTTAACCCTCTC 59 1945750 1945768 GAGTGCCCTCTTTACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 3 2 2 80 10 814391 814410 AAATTTCAGAAGCCCAAGCA 59 814451 816473 TGCATTATAGTCCACCTTCCC 60 NA Rattus norvegicus 81 Gmds ENSRNOG00000017605 ENSRNOT00000023691 2 1 1 80 17 33843969 33843988 GTAGGCAGATGTAAGGAGAC 57 33844030 33937475 TAGAAAGTCCACTTCAGTCG 57 NA Rattus norvegicus 81 Mcrs1 ENSRNOG00000054838 ENSRNOT00000082470 3 1 1 80 7 140912351 140912370 ACTTCTCAGATGCAGAGGAC 59 140911911 140912038 CTGTCAGCTCATGTTCCAG 58 NA Rattus norvegicus 81 Foxn2 ENSRNOG00000040110 ENSRNOT00000061693 1 1 1 80 6 12188478 12188499 TGCGTTGATCCAGAATATAAGC 59 12188537 12193959 TAAAGAAGCACTTTGTGGAGAG 59 NA Rattus norvegicus 81 Ctsw ENSRNOG00000027096 ENSRNOT00000037404 1 1 1 80 1 220846492 220846510 ACGGCTACAGGAAGAAGAC 59 220846099 220846448 TGGCCAAACTCTTCCTCTG 60 NA Rattus norvegicus 81 Fkbp3 ENSRNOG00000004629 ENSRNOT00000006531 1 1 1 80 6 86812583 86814270 CAAGGTTATCAGAGGATGGGA 59 86812523 86812544 CATTCTGGTTCAATCTCCAGTC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965,ENSRNOT00000063861,ENSRNOT00000084678,ENSRNOT00000042654 1 4 5 80 X 64307683 64311422 CCAAGACCACAGTGATTACAG 59 64307623 64307641 TTGCGTTCATTGATCTGCT 58 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 1 2 2 97 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Pcp2 ENSRNOG00000000993 ENSRNOT00000001313 3 1 1 107 12 2173670 2173688 CTCATGGATATGCTGGCCA 60 2172551 2173599 CTGCATTCCATCCTTGGGA 60 NA Rattus norvegicus 81 Gpx3 ENSRNOG00000052564 ENSRNOT00000079830 3 1 1 80 10 40254100 40254121 ATTTCCAGCTCTTTGAGAAAGG 59 40254162 40254491 GAGGGCAGGAGTTCTTCAG 60 NA Rattus norvegicus 81 LOC100910646 ENSRNOG00000045695 ENSRNOT00000067009 1 1 1 80 X 74846208 74846227 GTTGCTCAGAAGACTACAGC 59 74844931 74846165 TCTGAAGACTCTCCAGCTC 58 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 1 2 2 80 20 9620344 9620363 TTCACAGAGCTCTCCTTCAC 60 9621874 9624412 CATCTGGACCTCATTGTTGAC 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 2 2 2 80 20 9621870 9624408 CTTTGTCAACAATGAGGTCCA 59 9624450 9624468 TCCCTCTGGATGTTCAAGC 59 NA Rattus norvegicus 81 Sec24d ENSRNOG00000014872 ENSRNOT00000064809 3 1 1 80 2 227465481 227465499 GTCCTTTACCTCCTGGACC 59 227465542 227477175 GTCCCGGAAATCTTTGAGGA 60 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 2 3 3 83 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504993 47505011 TGTAGCGAATTTCACAGCG 59 NA Rattus norvegicus 81 Olr288 ENSRNOG00000021485 ENSRNOT00000029171 1 1 1 60 1 212679460 212679483 CACAGAGAACTTGGTCATTATCAC 60 212679423 212679441 CATAGGCTTGTGCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mob1a ENSRNOG00000059474 ENSRNOT00000090987 1 1 1 80 4 115033137 115036299 CCTTCTAAGATTGGTGTCCC 58 115036342 115036360 ATAAACCCTGAAGAGACGC 57 NA Rattus norvegicus 81 Cgn ENSRNOG00000020952 ENSRNOT00000028440 2 1 1 80 2 195927474 195928215 ATGGTGCAGTTCAAATCCAC 59 195927413 195927431 CTTCATATGGTCCGCACTG 58 NA Rattus norvegicus 81 Iqcb1 ENSRNOG00000038868 ENSRNOT00000066616 1 1 1 80 11 66865832 66869911 ATGCAACTAAGGGTGAAGAG 58 66865771 66865789 CTCCCAATAGCCAGAAGAG 57 NA Rattus norvegicus 81 Fat2 ENSRNOG00000012575 ENSRNOT00000058665 3 1 1 80 10 40621221 40623211 CATTCTGACAGTTATGGTGCG 60 40621161 40621180 CCATCCTCCACATGAATGGT 60 NA Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 1 1 1 80 17 15085053 15085073 TTGAGTTCCGTGTGAAATCTG 59 15084704 15085012 GCTGATCTATCGTTCCTGTG 58 NA Rattus norvegicus 81 AABR07054522.1 ENSRNOG00000047718 ENSRNOT00000072211 3 1 1 84 3 158944522 158944543 CTGGTTTGGATTGTCCAGAG 59 158944457 158944475 CCAATGTTTCCCACCACTG 59 NA Rattus norvegicus 81 Atg16l2 ENSRNOG00000019413 ENSRNOT00000026286 1 1 1 80 1 166411735 166413449 TAGTGCCGGCTTATAACCA 59 166411673 166411692 CCTTTGGTTCTGACTTCAGC 59 NA Rattus norvegicus 81 Exosc10 ENSRNOG00000010719 ENSRNOT00000014629 2 1 1 80 5 165380404 165380425 ATCCCTAGATGAACTTGTGGAG 59 165380464 165380796 TATGAGTGGTGCTCTAAGTCC 59 NA Rattus norvegicus 81 Mir425 ENSRNOG00000035484 ENSRNOT00000053607 2 1 1 60 8 117354828 117354846 TGGAATGACACGATCACTC 57 117354870 117354888 GACACGATATTCCCGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 2 2 2 80 11 61279410 61279430 GCTGGAATAAATCAAGACCCT 58 61278299 61279372 GTCTACTTCATTAAGAGCCTGAG 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283,ENSRNOT00000048418 2 2 2 80 10 90253004 90253025 AAGAACATGACTAAGCTTCGAG 59 90252855 90252963 GTCTTCCTCTGACTCCGAC 59 NA Rattus norvegicus 81 Plekho2 ENSRNOG00000029242 ENSRNOT00000042633 3 1 1 80 8 71099307 71104584 AGGGAACAAGGTCAGTGAC 59 71099245 71099266 CCTTCATTGAGAGCTTTGATCC 60 NA Rattus norvegicus 81 Medag ENSRNOG00000000906 ENSRNOT00000001205 1 1 1 80 12 6721308 6740291 CAGTTACATCAAGAGATACGTGG 59 6721250 6721269 ATGGGTTTGCTCAGTATCGT 60 NA Rattus norvegicus 81 Rmdn3 ENSRNOG00000011690 ENSRNOT00000016356 2 1 1 80 3 110953222 110960888 AGTGAAGGAGGTTATACGACAG 59 110953163 110953183 ATCTTCAGCATCCTCACTCTC 59 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 1 2 2 80 1 214412030 214412048 TCGGCTTCAGTCACTTGAG 60 214411876 214411987 TGTCTCCAGATCTTCCTTGC 60 NA Rattus norvegicus 81 Cdh20 ENSRNOG00000014556 ENSRNOT00000019907 2 1 1 80 13 24889355 24893095 TTGCTATGGAAATGAACAACCC 60 24893132 24893154 GAGCATTGTCATTCACATCTAGG 60 NA Rattus norvegicus 81 G3bp1 ENSRNOG00000013186 ENSRNOT00000018149 2 1 1 80 10 40834675 40834694 AAGAAAGACAGCAGTCACCA 60 40834735 40836761 CCTCCAAGTCATTGCTAACAG 59 NA Rattus norvegicus 81 G3bp1 ENSRNOG00000013186 ENSRNOT00000018149 3 1 1 80 10 40829003 40829021 AACTCTTCCTATGCCCACG 60 40829065 40830190 CCTGTGGATTTCCTTCTGC 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 1 3 3 80 6 8333845 8333863 CTGCATAGTGGTGAAGCTC 58 8332136 8333801 TCCTTCACCCATTCAAAGC 58 NA Rattus norvegicus 81 Eaf2 ENSRNOG00000002350 ENSRNOT00000003208 3 1 1 80 11 66882224 66882246 CCTCTTGTGAAGGAAATCTTGAG 60 66882280 66900535 GTGGAGTTGAACCTTCTATATTTGG 60 NA Rattus norvegicus 81 RGD1306750 ENSRNOG00000042018 ENSRNOT00000067909 3 1 1 85 4 166801497 166801517 GATACCAGCAACCAAGAAGAG 59 166800339 166801453 CCCATTTACTTTCTGACATTGC 58 NA InUTR Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467,ENSRNOT00000086979 3 2 2 80 18 36835813 36835832 CTAATATGCCACCAATGCCT 58 36835875 36838896 GCATGAATGGTGGTCTCTG 59 NA Rattus norvegicus 81 Tex2 ENSRNOG00000013659 ENSRNOT00000055114 2 1 1 80 10 94758772 94758790 CACAGATCCCACAAAGCTC 59 94741502 94758732 CATCCATCCCTTCAGTATTTCAG 59 NA Rattus norvegicus 81 RGD1564149 ENSRNOG00000012714 ENSRNOT00000017141 3 1 1 80 20 12928442 12932592 GTATTAAGGAAGACATGGTGGAG 59 12928384 12928405 TAAGCATCATGTTCTGCATGAG 59 NA Rattus norvegicus 81 Catsper3 ENSRNOG00000011374 ENSRNOT00000015163 1 1 1 80 17 8925257 8925275 AGAGTCAAGTCCAGCTCAC 59 8923492 8925219 CTTATCCCTTCTCTTATATTGGCTG 59 NA Rattus norvegicus 81 RGD1561931 ENSRNOG00000021589 ENSRNOT00000035653 3 1 1 62 X 74968377 74968396 AAGCTGAGGACTAACTTCAG 57 74955705 74968353 TCAAATGTTGTCCAACAGGA 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Dleu7 ENSRNOG00000009181 ENSRNOT00000065838 3 1 1 85 15 45369235 45369254 GTAAGTGTGACTGCCAACTG 59 45361357 45369188 ATTCCACGCTATCCTGTAGG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 3 1 5 227 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80531026 80531226 AGACACTGTCTTTGGAATCTC 58 NA DesignRelaxed Rattus norvegicus 81 RGD1304929 ENSRNOG00000022760 ENSRNOT00000039518 2 1 1 80 15 57098069 57098090 CCCATCTTCAACCTGTTAAGTG 59 57098131 57098445 CTCCTGGATGTCCTTCACC 60 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 3 2 2 80 3 111057714 111057960 GTCAGTGTTAAGAGAAACCATCC 60 111057999 111058018 TCTTGTCAGTTGGAACAGGT 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574,ENSRNOT00000088654 2 2 2 228 13 99173785 99174499 CAGAACTTTCGAGAGGTGG 58 99174691 99174709 CATCCTCACGGACTCTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574,ENSRNOT00000088654 3 2 2 229 13 99173784 99174498 CCAGAACTTTCGAGAGGTG 58 99174691 99174709 CATCCTCACGGACTCTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Fhl3 ENSRNOG00000007541 ENSRNOT00000010007 1 1 1 86 5 142693726 142693744 TACTGTGTTCCCTGCTACG 59 142693792 142693908 AAACAGTTCCCTTGAATCGTG 59 NA Rattus norvegicus 81 Fam101b ENSRNOG00000006674 ENSRNOT00000008982 1 1 1 113 10 64197031 64199660 GGAAATAAAGTATACCTCCTCAGTC 59 64196942 64196960 ATACAGGTGACTGTCTGGC 59 NA Rattus norvegicus 81 Pithd1 ENSRNOG00000010873 ENSRNOT00000014458 3 1 1 84 5 154325202 154331791 GATGAGACTGTACAAGAACATTCC 60 154325141 154325161 ATCTCGGTTCAGACTAAAGGT 59 NA Rattus norvegicus 81 Egf ENSRNOG00000053979 ENSRNOT00000089504 3 1 1 80 2 68877600 68877618 TACCAGACGATGACAGGAC 59 68877659 68882306 CGCAGTCATCTTCATAGTTCAG 59 NA Rattus norvegicus 81 Neb ENSRNOG00000006783 ENSRNOT00000059461 3 1 1 80 3 37679085 37679703 TCAGCCTCCTTCAATACCAG 59 37679024 37679042 GCAGTATTTCTGGCGTGTC 59 NA Rattus norvegicus 81 Phlpp1 ENSRNOG00000002821 ENSRNOT00000003840 2 1 1 80 13 26280171 26280192 AGAGCCAGACTTACTACATCTG 59 26280233 26303201 GTGATGCAACCTTGGAGAC 59 NA Rattus norvegicus 81 Snx8 ENSRNOG00000001258 ENSRNOT00000001696 2 1 1 81 12 16385122 16385140 CCATGTCTACCTGCCTCTC 59 16385185 16388195 CTTGCTCATCTCCTTGTGC 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215,ENSRNOT00000044390 1 2 2 80 1 214057524 214061510 AAACATGTAGGCCTCATTCAC 59 214057464 214057482 GATGACCAGAATGACCAGC 58 NA Rattus norvegicus 81 Aqp3 ENSRNOG00000009797 ENSRNOT00000013803 2 1 1 80 5 57425495 57425513 CAGCTGGTATCTTTGCCAC 59 57425047 57425451 CTGCTGTGCCTATGAACTG 59 NA Rattus norvegicus 81 Ppp1cb ENSRNOG00000004612 ENSRNOT00000006190 2 1 1 80 6 23563750 23563770 TGAAATCTTTCTTAGCCAGCC 59 23561537 23563714 GTATACTGTCCATGAATATCTCCAC 59 NA Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 1 2 2 89 2 189995076 189995094 TACAAGATCTGCCAGTCGG 59 189995556 189995574 ATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674,ENSRNOT00000079707 2 2 2 80 13 48703494 48703515 GGTTAAGAAGTCCAAACCTGAG 59 48703556 48704587 ACTGGACTTGGTGTCACTG 60 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 1 2 3 91 6 76701666 76702744 AATTAGGAAGGCAATGGCT 57 76705063 76705081 CAGATCTAGCACTGTGCAG 58 NA Rattus norvegicus 81 Pof1b ENSRNOG00000004795 ENSRNOT00000006415 2 1 1 80 X 84129787 84133866 CTAAACACAGATCAGGAATGCT 59 84129728 84129746 TGGTGAGTGGATGATCTGG 59 NA Rattus norvegicus 81 Olr396 ENSRNOG00000025931 ENSRNOT00000030984 3 1 1 60 3 15749707 15749727 AGAGTACTGTGTTTGAGTTCC 58 15749749 15749767 ACATTCTGATGCTCTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304728 ENSRNOG00000014027 ENSRNOT00000018808 2 1 1 80 10 58742807 58742827 ATTTGAAGGATCTCCCATCAC 58 58741085 58742765 AATGGACATCTGAAGCCTG 58 NA Rattus norvegicus 81 LOC302228 ENSRNOG00000047403 ENSRNOT00000071967 2 1 1 60 14 96300845 96300863 CTGCCAACAAATCCCTCTC 59 96300884 96300905 GTCCGTAGACACATTCAATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000080944 3 1 2 90 10 14847948 14848770 CAAGATGAAGACAAGAGTGGG 59 14847878 14847896 TTCAAATCCTGCTGGTCTG 58 NA Rattus norvegicus 81 Adprh ENSRNOG00000027260 ENSRNOT00000038439 2 1 1 96 11 64866740 64867422 CAACACTGGTCCTACTTCGA 60 64867481 64867499 CAAAGGGTTTCGGGAAGAC 59 NA Rattus norvegicus 81 Rn60_5_0814.13 ENSRNOG00000051116 ENSRNOT00000076260 3 1 1 65 5 77898556 77898574 GAACCTGAGCAGAGAAACG 59 77898509 77898527 CATCGAGGTTGGATTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam18 ENSRNOG00000022701 ENSRNOT00000038229 2 1 1 80 1 99563717 99563735 CAGGCAACTACACTGTCCA 60 99563775 99566308 CTCTCAACTTTATGATCTCGAGC 59 NA Rattus norvegicus 81 AABR07040288.1 ENSRNOG00000047560 ENSRNOT00000049969 1 1 1 60 X 96991682 96991701 TTTCTTGGGTTCTTGTTGCT 58 96991835 96991853 ACTGGGTCATCTGGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Adamts19 ENSRNOG00000019577 ENSRNOT00000026543 2 1 1 80 18 54026672 54027797 GCAAGTGTCCTGGAATATGTG 59 54027839 54027857 TATAGGCCTGACATTGCCA 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 1 2 2 85 4 113952880 113953039 ATGAACTCTGGTGGTTCTG 57 113952813 113952831 GAGTTTAGCTCTTCGGTGG 58 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 3 1 1 62 X 152196416 152196570 CATAAAGGTATATGACTTGGTGGAC 60 152196588 152196608 GTAGTGAATGCCTTCATTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Wrnip1 ENSRNOG00000017040 ENSRNOT00000023332 1 1 1 80 17 32948960 32950181 TCTCAGCAGGACACTTTCC 59 32948898 32948918 GAAGGAAGGATTCTCAGTGGT 60 NA Rattus norvegicus 81 Ccdc152 ENSRNOG00000039473 ENSRNOT00000060492 3 1 1 80 2 53117344 53117363 GCAAGAGCTCAGACTAAGTC 58 53116411 53117301 ATGCTGAAGCTTCCTTCTG 58 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000074007 2 1 2 80 10 94194017 94194790 CGCAGTATAATGGGTACAAAGAC 60 94194830 94194848 GTTCCAGGTCTTCCTCCAG 59 NA Rattus norvegicus 81 Cdc27 ENSRNOG00000005904 ENSRNOT00000007963 2 1 1 80 10 92561991 92562012 GAAATGCATTTCCAGAAAGCAC 59 92559141 92561950 TGCATGCTGAACTACTCCA 59 NA Rattus norvegicus 81 Ccdc167 ENSRNOG00000000531 ENSRNOT00000000639 1 1 1 80 20 8370007 8370763 CCTCGAAATATGAGAAGGAGC 58 8369947 8369965 CTATGAAGATGGCCACCGA 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 1 2 2 86 20 19352584 19357846 GACTATGTTAGAGATCACTATGGG 58 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Olr1274 ENSRNOG00000047291 ENSRNOT00000073665 3 1 1 60 8 43043836 43043856 ACCCATGTACTTCTTCCTCAG 59 43043796 43043816 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.15 ENSRNOG00000051164 ENSRNOT00000076437 1 1 1 86 5 77836232 77836251 CGATGTTCTTCAGGAAAGGT 58 77831715 77836183 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Rn60_5_0814.15 ENSRNOG00000051164 ENSRNOT00000076437 3 1 1 88 5 77836232 77836251 CGATGTTCTTCAGGAAAGGT 58 77831713 77836181 TCTTGTTGGACCTTTGCAC 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 1 2 2 80 8 97386334 97386357 GAAGGCAGATAAGAATGAAAGGAC 60 97386391 97390662 GAAGCGATCAAGTTACTGATATGG 60 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 2 2 2 80 8 97399102 97399121 ATCTCCCATATTATCCGCGA 58 97399162 97404690 GTACTGAGTTACCTTTGGCTG 59 NA Rattus norvegicus 81 LOC688282 ENSRNOG00000045889 ENSRNOT00000074899 3 1 1 82 10 106800187 106803759 CAGACAGAAGGCATCACCA 60 106803803 106803823 CGGATGTCACAGGTTATAAGC 59 NA Rattus norvegicus 81 RGD1306072 ENSRNOG00000025796 ENSRNOT00000030658 3 1 1 84 19 25283138 25283394 CAGTCTCAATCGACTGATTATGAG 59 25283437 25283455 AGTCAGGTAAGGCAGAGAC 58 NA Rattus norvegicus 81 Orc6 ENSRNOG00000024043 ENSRNOT00000039467 1 1 1 80 19 27462194 27462213 TGGATTAAGAGACCTGGCTG 59 27461765 27462154 GACTCATAGCTTTGCAGTATCC 59 NA Rattus norvegicus 81 Pet100 ENSRNOG00000050169 ENSRNOT00000071928 3 1 1 81 12 2170676 2171441 TGTTTCGGATGTCACTCTACC 60 2171483 2171502 ACATAGTCCTCGAACCACTC 59 NA Rattus norvegicus 81 Ren ENSRNOG00000002937 ENSRNOT00000003951 2 1 1 80 13 50507672 50507691 GGGACTGAATTCACCATCCA 60 50506861 50507630 GATTCCACCCACAGTTACCA 60 NA Rattus norvegicus 81 Rn60_5_0814.25 ENSRNOG00000051326 ENSRNOT00000077037 3 1 1 60 5 77475057 77475077 TTTGAATGTACTGAGTGTGGG 58 77475017 77475039 TCTGATGGATAACTAGGTGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 3 1 1 80 19 37248644 37249746 TTACAAGCAGTACCAGCTG 58 37248582 37248600 CAGGTTCACATATGCCTCC 58 NA Rattus norvegicus 81 Ankrd52 ENSRNOG00000030597 ENSRNOT00000047462 1 1 1 80 7 2808854 2809203 TGAAGAAGGTCACACTCCA 58 2809247 2809265 ATGGTGGAGAGGATCAAGG 59 NA Rattus norvegicus 81 Dgkh ENSRNOG00000010065 ENSRNOT00000058079 3 1 1 80 15 60843984 60844003 AGACTCTGTTGCAAATCACC 59 60840793 60843942 CAGAGTATCTTGGCAGACGA 59 NA Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 1 1 1 80 20 13442932 13442952 GATTTACACTGACACCCTCCA 60 13440753 13442890 CCGACTTCAACAAATGCGT 60 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000046431 ENSRNOT00000071085 1 1 1 80 8 3862504 3862524 CCAAAGAACCAGAAATTGTCC 58 3861048 3862464 GCATACAGACTGAGGAATCTC 58 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 3 1 1 60 13 50744438 50746110 AAAGGATGTACGTCGAATGGA 60 50744398 50744416 ATGAGGTTCTGAGGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Aig1 ENSRNOG00000010753 ENSRNOT00000046539 1 1 1 80 1 7999770 8038455 CTTCATTGATCTGGTTATCCAGG 59 7999712 7999730 CTGCCTCTGGTCAGAAGAC 60 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254,ENSRNOT00000085125 3 2 2 80 1 214605093 214605773 GCAAGCTCAGATGTACAGAC 59 214605816 214605834 TGTTCCGACAGCAATTCAC 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 1 2 2 80 3 7124790 7125260 CCATGAAGGACTATCTATATGGGAG 60 7125566 7125584 ACTTGATCTGGGCGATGAC 60 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349,ENSRNOT00000081104 2 2 2 82 7 134475291 134480539 TCTTGCCATTGATACTGAAAGG 59 134475230 134475248 GATGTCATCAACAGGTCGC 59 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758,ENSRNOT00000066128 2 2 2 82 15 51461132 51461150 ACAGAACTCAGAGTTCGCC 60 51461195 51462873 GATCAACTTCAGGGCATCAG 59 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000066523 3 1 2 83 10 103545482 103546089 TGAACCTTCAGCCAGATCC 59 103546135 103546154 CATATTGGCACTGCACTGTC 60 NA Rattus norvegicus 81 RGD1559578 ENSRNOG00000024233 ENSRNOT00000037415 2 1 1 80 10 98093706 98093724 ATCAACATGCACAAGTGCT 58 98091276 98093662 CAACCTTCGCATCTCTGTG 59 NA Rattus norvegicus 81 Ccdc109b ENSRNOG00000009433 ENSRNOT00000012587 3 1 1 80 2 230201339 230201358 ACGTTCTTCCTTACGTTTGC 59 230200177 230201299 GGATTCGTAAGTGTAGTTCTGC 59 NA Rattus norvegicus 81 Pdk2 ENSRNOG00000004172 ENSRNOT00000005641 2 1 1 80 10 82850703 82850723 TCATGAAAGAGATCAACCTGC 58 82844009 82850661 TCTGGACATACCAGCTCTG 59 NA Rattus norvegicus 81 Slc27a6 ENSRNOG00000058193 ENSRNOT00000077443 3 1 1 80 18 53660227 53662709 ACACTTTCAGGTGGAAAGG 58 53662750 53662771 CTTCCTGTATAAAGTCCAACCT 58 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 1 1 1 80 6 34155199 34159854 GTCACAGGAGCAAATGTAGC 59 34159895 34159915 AATCAACGCTGAAGTACTTGG 59 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 3 1 1 60 10 104036918 104036937 GGACTTATTCCTCGATTCGC 59 104036957 104051004 CCCAATAGCAAACTTGATGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Smarcc2 ENSRNOG00000031135 ENSRNOT00000028244 3 1 1 80 7 2877974 2877993 CTCCAGTTTCAGGAAGAGGT 59 2878033 2879573 ATCTAGGAAACATTTGATCGGC 59 NA Rattus norvegicus 81 Zmym1 ENSRNOG00000013855 ENSRNOT00000064015 1 1 1 81 5 145114414 145114432 CGAAAGCCATGTGTTACCG 60 145111080 145114370 TGGGTGGTTTAGTGGATGTC 60 NA Rattus norvegicus 81 Gm2a ENSRNOG00000052219 ENSRNOT00000078910 1 1 1 80 10 40443865 40443883 TGTCGTTCCTGGAGATGTG 59 40443927 40449013 GTGAGCTCCACCTTCTGAG 60 NA Rattus norvegicus 81 Flrt3 ENSRNOG00000004874 ENSRNOT00000006454 1 1 1 83 3 134685278 134685297 CGAGAGCAAGAGAAAGAACC 59 134684607 134685233 CTTCAATATCAGGGCCACAG 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 2 4 4 80 5 116637620 116652350 AAGAGTGTCACAAACACCA 57 116652391 116652412 CTGTAGTATGAGGAACTTTCCA 57 NA Rattus norvegicus 81 Rabl6 ENSRNOG00000016795 ENSRNOT00000065410 1 1 1 80 3 2808600 2808621 AGAATGACTCAGATCTCTTTGG 58 2807877 2808562 GTTTGCTGTCTTTATCTTCCTC 58 NA Rattus norvegicus 81 Samt3 ENSRNOG00000029010 ENSRNOT00000040231 1 1 1 80 X 54554462 54555957 TATACAAAGGTTTGCTGTGGC 59 54555996 54556017 TCAAACACCAAAGCTATTAGGC 59 NA Rattus norvegicus 81 Rn60_X_0637.3 ENSRNOG00000051241 ENSRNOT00000076267 2 1 1 60 X 63102328 63102347 TTTCCGTCTTCCACTACGAG 60 63102287 63102305 GTCTTGGCAAGTGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 2 2 2 143 13 50532092 50532110 TTCCAGAATGATCTCGCTG 57 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 2 2 2 80 16 758274 758292 ATGACACGGTAACCATCCG 60 758333 758434 GAAGGACATCAATGACCATCTG 59 NA Rattus norvegicus 81 Olr12 ENSRNOG00000033009 ENSRNOT00000047063 1 1 1 60 1 149578600 149578619 CTATTCTTCGCATCCGTACC 58 149578559 149578580 TGAGATGAGCATGTAGAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 2 1 1 105 13 37491662 37491681 GGAAGATATACAAAGCCGCC 59 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Plb1 ENSRNOG00000026037 ENSRNOT00000061176 2 1 1 80 6 25432405 25432573 GGAAGAACATGCTAGAACCTG 59 25432345 25432364 GGTTTGGACACATGATAGGG 58 NA Rattus norvegicus 81 Prdm6 ENSRNOG00000030486 ENSRNOT00000047755 1 1 1 80 18 48521100 48521120 AGTGCTTTAAGACTTTCACGC 60 48521162 48530860 CACACTGGTAGGGTCTGTC 59 NA Rattus norvegicus 81 RGD1310951 ENSRNOG00000016780 ENSRNOT00000022866 2 1 1 83 5 76926907 76984315 CATTCCAGCTTATTCTACTAAGCTC 60 76984356 76984374 ACTGCACTGGTACACAGAC 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 2 2 2 83 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626072 TAAGCTCTGAGACCGTCAG 59 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 1 1 1 80 1 8628547 8628565 AGCCATTTCTCCCTCTGTC 59 8627503 8628503 TCGTTACAAAGGCATGTCC 58 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 3 1 1 80 1 8599718 8600374 CAACTCAGATTGGAGTAAGACAG 59 8599660 8599682 GAGCTTGACGATAAAGATTTCCC 60 NA Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 2 1 1 82 10 34218917 34221543 CTGGATCAGGGTTTGAGGAG 60 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 LOC681193 ENSRNOG00000048562 ENSRNOT00000071028 2 1 1 98 1 214454218 214454236 CCGGGATATACCACCACTG 59 214453948 214453966 CGAACTGGGATGATCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Dnali1 ENSRNOG00000024957 ENSRNOT00000029388 1 1 1 80 5 143061549 143061567 TCAACTTCCTGTGTCCCAG 59 143060304 143061505 TTCTACCCACTCCCTTGGA 60 NA Rattus norvegicus 81 Reg1a ENSRNOG00000006486 ENSRNOT00000057869 1 1 1 90 4 109500106 109500125 CTACAAATCCTGGGACACTG 58 109500175 109500379 TCTCCATTTCTTGTATCCTGAG 57 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000035976,ENSRNOT00000036233,ENSRNOT00000073253 3 4 5 82 5 101801092 101855462 GGGAAGCTGTTAAGAGTCTC 58 101855505 101855525 GAGATGTCTATTGAGCTGACG 58 NA Rattus norvegicus 81 LOC100910150 ENSRNOG00000033015 ENSRNOT00000040657 1 1 1 80 18 52465397 52487495 TATCAGGGCTGGTTCTTGC 60 52487537 52487557 GACAGACACAAAGTCACACTG 60 NA Rattus norvegicus 81 Mtf1 ENSRNOG00000050240 ENSRNOT00000072841 2 1 1 80 5 142335046 142335065 TGCCAAGAAACATTGAAGGT 58 142335106 142350646 GGTACCGCTTTACTTCTTTCC 59 NA Rattus norvegicus 81 Emp2 ENSRNOG00000002664 ENSRNOT00000003615 2 1 1 80 10 5455770 5460794 CAACCATTGACAATGCCTG 58 5460838 5460856 TACAGTTTGTGCTGTTGGT 58 NA Rattus norvegicus 81 Olr257 ENSRNOG00000051603 ENSRNOT00000090373 1 1 1 60 1 172551289 172551307 CCAAAGTCCACCTTCTCCA 59 172551247 172551267 TTACCACCATGTAGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 1 3 3 161 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA Rattus norvegicus 81 Fam186b ENSRNOG00000054250 ENSRNOT00000082521 3 1 1 81 7 140950889 140950907 TTGGTGACTCCCACTTCAG 59 140949966 140950845 CCGAGATATCCTCCTGAGTC 59 NA Rattus norvegicus 81 Fbxo16 ENSRNOG00000014003 ENSRNOT00000018762 1 1 1 80 15 48705772 48705790 TTCAAGCAGCAGTTTCGAG 59 48705833 48723100 CAGGGACATCAATGACTGTG 59 NA Rattus norvegicus 81 Espnl ENSRNOG00000024717 ENSRNOT00000033629 3 1 1 81 9 98480220 98481807 CCAGAAGATCAGGACCAGAG 59 98481851 98481869 GAGTCTGCGAATACCTCCA 59 NA Rattus norvegicus 81 Mettl5 ENSRNOG00000008469 ENSRNOT00000011303 2 1 1 80 3 56102332 56104158 AGATTATCGCAGAGCTTCGA 59 56101799 56101817 GGTCCACTTCAATGTCCAC 59 NA Rattus norvegicus 81 Twist2 ENSRNOG00000020355 ENSRNOT00000027597 3 1 1 290 9 98924514 98924534 CAATAAGATGACCAGCTGCAG 60 98967980 98967998 AAGGATGTGAACCTGGCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_X_0614.1 ENSRNOG00000029559 ENSRNOT00000049652 3 1 1 60 X 60761762 60761784 CAAGGGAAGGTAATCATTTGGTC 60 60761804 60761822 CCTGGAAATGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.1 ENSRNOG00000051274 ENSRNOT00000076406 2 1 1 60 X 62926161 62926179 TGCAAGGAGATCTGCTCTG 60 62926119 62926137 TGCCAAAGTGACAGTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645,ENSRNOT00000088070 3 2 2 80 4 136889459 136891533 GGGCTATGAGGTCTTATACTG 57 136891574 136891593 GTTGTGACATTTCCACTGAC 57 NA Rattus norvegicus 81 Rn60_5_0814.28 ENSRNOG00000051270 ENSRNOT00000076132 2 1 1 60 5 77396723 77396744 ATTTGAATGTACTGAGTGTGGG 59 77396684 77396705 CTGATGGATAACTAGGTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr227 ENSRNOG00000049285 ENSRNOT00000073451 1 1 1 60 1 148863128 148863146 CCTGCTGATCCTTTGTTCC 59 148863170 148863188 TGCTGATGGAATCTTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0654.1 ENSRNOG00000051187 ENSRNOT00000076870 1 1 1 60 X 64487266 64487286 GGTAAGTGAAGCCTATCTGGT 59 64487226 64487244 TTTGGCATGGATAGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 3 2 2 80 2 198291941 198291961 TGATCAAACTTGCCTCAAGTG 59 198292001 198292409 CTTCTGAACTCTCCACTCCTC 60 NA Rattus norvegicus 81 MGC116202 ENSRNOG00000015625 ENSRNOT00000020927 1 1 1 80 19 37240470 37240488 AGGAACCAATGCCAATGAG 58 37240326 37240426 TAATGATGCCAACTGCCTG 58 NA Rattus norvegicus 81 LOC100911988 ENSRNOG00000045903 ENSRNOT00000045739 1 1 1 60 8 18062782 18062803 AACCTCATCATTATCTTGGCTG 59 18062743 18062764 AGAAGTACATTGGAGTATGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam28 ENSRNOG00000014518 ENSRNOT00000058715 2 1 1 80 15 50370947 50370967 AGCCATATTTGTGGTGATTGC 60 50361760 50370905 GGTGGTAGCCTCTGAACTC 60 NA Rattus norvegicus 81 Gpr153 ENSRNOG00000010718 ENSRNOT00000014444 1 1 1 80 5 169460400 169460832 ACTCAGACAACGAGACCAG 59 169460875 169460894 AGTCACCTCCATAGTCAAGG 59 NA Rattus norvegicus 81 Rn60_6_1181.1 ENSRNOG00000027960 ENSRNOT00000039048 3 1 1 92 6 107572771 107575371 CCCAAGGACACCTTAGGTC 59 107572697 107572715 TTCAGGAAAGAGGCCATGG 60 NA Rattus norvegicus 81 Lrrc61 ENSRNOG00000008234 ENSRNOT00000010864 1 1 1 92 4 78187268 78188680 CACGTGAGGTATCACTGGG 60 78188736 78188754 GTGAGCAGCTCTAGGAGTG 60 NA InUTR Rattus norvegicus 81 Use1 ENSRNOG00000016619 ENSRNOT00000022650 1 1 1 84 16 19763264 19763576 TGGAGAAGTATGTGGGTGC 59 19763699 19763717 TCACTGATCACTTCCGAGG 59 NA Rattus norvegicus 81 LOC100909613 ENSRNOG00000050749 ENSRNOT00000048907 1 1 1 60 3 103462913 103462932 CCTGGGATTCACAAACTCCT 60 103462950 103462973 GAACATTGAGGATACCAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730,ENSRNOT00000088197 2 2 2 80 14 76757761 76759582 GGAATCAGAATATGCAGATACACG 60 76759621 76759639 GAGACAGAAGGCTTGGGAG 60 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 2 2 2 105 9 100929097 100929115 AAATCGGCAAGCTTCTGAG 59 100927054 100929029 ATTAATGGCACTTGTTCCCA 58 NA Rattus norvegicus 81 Sumf1 ENSRNOG00000006813 ENSRNOT00000009008 2 1 1 80 4 140204682 140220223 TCGCTCTCACTAAGATGGT 58 140204620 140204638 CTCCATCCTGCTTGATCTG 58 NA Rattus norvegicus 81 Hsf4 ENSRNOG00000015253 ENSRNOT00000065013 1 1 1 80 19 37227962 37227980 TAATCCAGTGCCTGTTTGG 58 37228023 37228480 CATCTAGCATTAGGGACAGC 58 NA Rattus norvegicus 81 Olr44 ENSRNOG00000018512 ENSRNOT00000024965 2 1 1 60 1 167732464 167732483 GCCCAGATGTTCTTTATCCA 58 167732423 167732442 CCATTGATAACAGGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 3 2 2 81 1 219363605 219364108 ATCGAGATGCTGAAGGTGG 60 219363542 219363560 CTGCCTTTGCTTTCTCCTC 59 NA Rattus norvegicus 81 AABR07054332.1 ENSRNOG00000005116 ENSRNOT00000006859 2 1 1 109 3 148283639 148283661 TGGTGTTAAGTCCAAGGAGG 59 148283733 148283751 GCTTGCCAATCTTGTTCCC 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076460 1 1 4 80 15 36871625 36874454 CCACGGAGTTCATTATGTCTG 59 36874494 36874514 ACAGGAAACTAAGATAGCGGA 59 NA Rattus norvegicus 81 Prickle2 ENSRNOG00000012364 ENSRNOT00000016628 2 1 1 80 4 124301640 124301660 AGATGGGAAGATCTACTGTGG 59 124298456 124301601 GCAAAGATGATCTCATCACAGG 60 NA Rattus norvegicus 81 Bbs5 ENSRNOG00000007127 ENSRNOT00000009396 3 1 1 80 3 55888359 55892942 ATAATGGAGACAGAGGCAGAC 59 55892981 55893002 AAAGATTGACTCTGGGTAATGC 59 NA Rattus norvegicus 81 Olr392 ENSRNOG00000018112 ENSRNOT00000024351 3 1 1 60 2 209582447 209582465 AACCATGCTCTCCACACTC 60 209582405 209582423 AGACCTCCAGAAAGGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564730 ENSRNOG00000030045 ENSRNOT00000047012 1 1 1 60 9 99365038 99365057 GAGGTATGGACCTACAAGCA 59 99364997 99365015 CAAGCTTGTCCTTGGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000076858,ENSRNOT00000084632 1 4 5 100 X 63806376 63806394 AGATGTGGCCCTTCTTCAG 59 63806046 63806217 CTCTCAGCATTTCTGAGCG 59 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076938,ENSRNOT00000009870,ENSRNOT00000084632 2 3 5 61 X 63803806 63803825 ATTGAGTTTGAGCTGCTGAC 59 63803764 63803782 ATCCTGGACCAAGGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269,ENSRNOT00000009084 2 2 2 80 7 29546266 29546285 CTGGAGTTCTGGAAGAGACG 60 29537543 29546227 TATTTCTTCCTCCTCTTCTTCCC 59 NA Rattus norvegicus 81 Zfp174 ENSRNOG00000007655 ENSRNOT00000010059 3 1 1 88 10 11933232 11933250 TCTCATGAGCAGCTGAGTC 59 11929888 11933181 ATTCTGGAGGACTCTGTCTC 58 NA Rattus norvegicus 81 Mtpap ENSRNOG00000016578 ENSRNOT00000022462 1 1 1 81 17 56057609 56058158 GACTGCCAACAATAGTATTGC 58 56057548 56057569 CAAAGCTCTTACTCTTGAATCC 57 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754,ENSRNOT00000080846 3 2 2 80 20 18921689 18921709 AGAAACCATCAAGGAACTGAG 58 18921751 18927694 AATGAGGAGCCCTCATAGG 58 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 3 1 1 81 2 194558554 194558572 TGGAGTGGAAGTCAATGGT 59 194558616 194718242 AAGCACTCTTGCATAGAAGC 59 NA Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000021167 3 1 2 82 4 117584812 117589364 GTAGTTGAGGGTTCAGGGA 58 117584748 117584766 ATAAGGAGCCATGGGAGAC 59 NA InUTR Rattus norvegicus 81 Mir291b ENSRNOG00000056886 ENSRNOT00000092137 2 1 1 68 1 64537911 64537929 GAAGTTGGAACACAGGGTC 58 64537861 64537879 AAATGGATGCACTTTCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctxn1 ENSRNOG00000001057 ENSRNOT00000001399 3 1 1 215 12 2534363 2534384 GAGTCCCAAGAAAGAGAAAGAG 59 2534963 2534981 CAACAGAACCAACACCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom2r59 ENSRNOG00000045674 ENSRNOT00000042692 3 1 1 95 12 4004148 4019987 ATTACAGAGACTCCCAGGTC 58 4020044 4020063 GCAGTCAAAGCAACATATCC 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000092100 1 1 11 80 6 98912435 98912455 GTTGCTGACATCATAGAAGGA 58 98912494 98920915 CTTCTCAATATGAAAGTGCAGG 58 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 3 1 1 80 10 84785629 84786215 ACACCTATTTAGTGGAACTCTC 57 84785570 84785588 TGGCAATCTGCTTCTTCAG 58 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870,ENSRNOT00000020414 3 2 2 80 9 78315481 78315499 ACTGCTCAGCAAACTTGAG 58 78314753 78315440 GGAACAATGACATGAGTTACTG 58 NA Rattus norvegicus 81 Rn60_5_0814.30 ENSRNOG00000051103 ENSRNOT00000076250 1 1 1 60 5 77359413 77359431 AACTCTAGATGTGCTGCTG 57 77359371 77359390 TTCTCCTGTCTCAACTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 1 2 2 80 3 3363174 3363192 CACCAGAACACCCTTTCCT 60 3363232 3363348 GATGAGGTACACAATATCGTTGG 59 NA Rattus norvegicus 81 Muc20 ENSRNOG00000001776 ENSRNOT00000002418 1 1 1 92 11 71227331 71227349 TAACCAAGACCACAGCCTC 59 71227402 71232623 CATTTATACCTGGATCGTGCTC 59 NA Rattus norvegicus 81 Zfp800 ENSRNOG00000007662 ENSRNOT00000010223 1 1 1 80 4 55521367 55521388 TTTGTTACAGCAACCAGTACAG 59 55509961 55521327 AGTTGTTTGGTTCCTGATCG 59 NA Rattus norvegicus 81 Dkkl1 ENSRNOG00000020686 ENSRNOT00000028082 1 1 1 80 1 101208972 101208990 TCAGGAACAGAACCAGGAG 59 101208785 101208929 TGGTTGTCAGTCATCTTGTC 58 NA Rattus norvegicus 81 AABR07047232.1 ENSRNOG00000048316 ENSRNOT00000075288 2 1 1 81 5 24926180 24926896 GCTTCCTGGAGGAGATCAG 59 24926117 24926138 GTCCTCCAAACGCTTAATTCTC 60 NA Rattus norvegicus 81 Rn60_5_0814.17 ENSRNOG00000051345 ENSRNOT00000076612 3 1 1 60 5 77794969 77794988 AATCTAGATGTGCTGCTGTG 58 77794928 77794948 ATTCTCCTGTCTCAACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hipk2 ENSRNOG00000007034 ENSRNOT00000064891 2 1 1 80 4 66470436 66470454 ATGAGACAGCAACCAACCA 60 66464192 66470393 ACAGGTGGAGACATTTCTCG 60 NA Rattus norvegicus 81 Nr1i2 ENSRNOG00000002906 ENSRNOT00000003934 3 1 1 81 11 65053973 65055397 ATATCCCACTTCAGGGAGC 59 65055442 65055460 ACCTCAGGATGCACATCTC 59 NA Rattus norvegicus 81 Map2k1 ENSRNOG00000010176 ENSRNOT00000013933 2 1 1 96 8 69141770 69143618 CCTACATGTCGCCTGAGAG 60 69141692 69141710 CTTCCAACTGCCATCTCCA 60 NA Rattus norvegicus 81 Rab19 ENSRNOG00000009030 ENSRNOT00000012280 2 1 1 84 4 67174020 67174038 ATTCGAGTCTGTCCCTCAC 59 67174086 67175293 TGATTTGTTCCCGATCAGC 58 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000072584 3 1 2 80 1 225828093 225828111 GCTGTGAAGCAATTCAAGC 58 225825562 225828049 TATTGCCTCCATCATCACG 57 NA Rattus norvegicus 81 Fgfbp1 ENSRNOG00000003095 ENSRNOT00000004128 1 1 1 60 14 71649310 71649328 TCTTTCCTTCTCCTGGCTG 59 71649351 71649370 CATTCTTGGCTGTCTTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089551,ENSRNOT00000089805 2 3 4 80 2 78252695 78252957 CTTTGTCCTAAGATTAGCCTCAC 59 78252995 78253015 AGTCCAAGAGACTTCTGACAC 60 NA Rattus norvegicus 81 Nudcd2 ENSRNOG00000060914 ENSRNOT00000086814 2 1 1 80 10 25893313 25895545 TCCAGAAAGAGAATCCTGGG 59 25895587 25895606 TTGAGAAATCTGGTCCACCT 59 NA Rattus norvegicus 81 Srfbp1 ENSRNOG00000014808 ENSRNOT00000020030 2 1 1 86 18 47475654 47475672 AGCTGATTCCAGAAGCCAG 60 47475721 47476803 GTTCTCTGGGATCCCTTCTG 60 NA Rattus norvegicus 81 Mrgpre ENSRNOG00000054917 ENSRNOT00000077911 1 1 1 60 1 216971013 216971035 GGAATCCCTTCTCCATCTATCTC 60 216970975 216970993 CAGCAGAGGAAGATGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsig2 ENSRNOG00000033490 ENSRNOT00000042679 1 1 1 80 8 40010414 40010434 ATAACTTTGCCTTGGAGTGGA 60 40010473 40010756 CGTTGGTGAAGTACAGAATAGG 59 NA Rattus norvegicus 81 Tars2 ENSRNOG00000057194 ENSRNOT00000087052 3 1 1 80 2 197873313 197873333 GAGATCATAACTGCTGCACAG 59 197873151 197873273 GTGGTTATCCTTGAAGAGCTG 59 NA Rattus norvegicus 81 Sec61a1 ENSRNOG00000013743 ENSRNOT00000018454 1 1 1 80 4 120464740 120464831 TTAGTATGCTGCCAGATTCC 58 120464679 120464697 CAGAATCACTCGCATCCAG 58 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 1 2 2 80 12 1717038 1720299 AGATGCCACCAATCCTTCC 60 1716976 1717000 GGCTTCCACTTTAAGATAATCTGAG 60 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 3 1 2 70 10 43633055 43637223 GCCACAAATGATACGGAAGG 59 43637256 43637274 TAAACAATGGCGGCTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 2 2 2 80 15 89270277 89270295 CTGGCATGGAATAAACCCG 59 89268523 89270235 TTCCTGAAATTCCTCTTCGTC 58 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 1 3 3 80 8 71038935 71039768 AATGGACATTAGGCAGCAG 58 71038873 71038891 GCAATGAGGAGCATCTCTG 58 NA Rattus norvegicus 81 Mrto4 ENSRNOG00000017979 ENSRNOT00000024326 2 1 1 80 5 157815870 157815890 CTGTCTGACTATGAAGTGTGC 59 157815698 157815830 CTCATACCCAAACAGCTTCAG 59 NA Rattus norvegicus 81 AABR07058745.1 ENSRNOG00000050884 ENSRNOT00000071423 2 1 1 80 7 136053994 136054013 AGGGACAACTGGAATCTCAG 59 136054053 136062286 TTTGTTGAAGTTGTAGCCTCTG 59 NA Rattus norvegicus 81 Dynlrb2 ENSRNOG00000012450 ENSRNOT00000016713 1 1 1 80 19 49019905 49019923 TGGAGGAAACCCTCAAGAG 59 49019967 49027295 GGATTGGAATGCCTTCTGC 59 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 3 1 1 60 4 170104331 170104349 CGAGAAGCATCTGACTGAG 58 170104289 170104307 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc4 ENSRNOG00000048121 ENSRNOT00000004563 1 1 1 82 10 2023254 2024276 GGTCAGAATTCAGGTTGGC 59 2023190 2023208 TCTGGGACACGGTAAACTC 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867,ENSRNOT00000077612 2 2 2 80 11 65119824 65135284 GGCGAGAAGAAAGATGAGGT 60 65119763 65119781 ATAGTGTCTGGCGACTCTG 59 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677,ENSRNOT00000067125 3 2 2 81 4 79035879 79035897 TTTCAGTCATGGACCATCC 57 79035942 79037284 CTTGGACCTACTGCTAGTG 57 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252,ENSRNOT00000082160 2 2 2 81 10 83097338 83098168 CTCCATCAAAGAAATTAGCCAGG 60 83097279 83097297 CTTGAGCATCTGAAGGGCT 60 NA Rattus norvegicus 81 Ggct ENSRNOG00000034084 ENSRNOT00000043752 3 1 1 82 4 85188004 85189385 TCTCTGGATGAACAAGAAGG 57 85187941 85187959 ATGTCCTTCCCTTGTTGAG 57 NA Rattus norvegicus 81 Fgf21 ENSRNOG00000020990 ENSRNOT00000028490 2 1 1 80 1 101595858 101596396 TCTCTATGGATCGCCTCAC 58 101595796 101595815 TGGTACACATTGTATCCGTC 58 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 2 2 2 80 17 54670697 54670717 TACACCTTTGCATACAGAACC 58 54668772 54670656 CTGTGTCACATGTCTTTGCT 59 NA Rattus norvegicus 81 Dlx3 ENSRNOG00000004278 ENSRNOT00000005797 1 1 1 94 10 82938402 82938422 AAGTCGGAATATACCTACGGG 59 82938478 82939540 TCCTCTTTCACCGACACTG 59 NA Rattus norvegicus 81 Sec11a ENSRNOG00000011029 ENSRNOT00000015218 2 1 1 80 1 142740017 142740036 CGAGGCCTCTATAAACAAGG 58 142734268 142739974 AATGTACGGAACAAACCCT 57 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 2 1 2 81 12 11247503 11247522 GACGACTAAGAAGGTGACAC 58 11247563 11249142 CTGCTTCTCTATTTCTTCTCGT 58 NA Rattus norvegicus 81 Rnaseh2b ENSRNOG00000009192 ENSRNOT00000012231 2 1 1 80 15 45453281 45453299 ATGTTAATGTTGGAGCCCG 58 45453341 45455798 CATAGTCTTCTTCCTTGTCCC 58 NA Rattus norvegicus 81 Arf1 ENSRNOG00000060229 ENSRNOT00000080028 2 1 1 92 10 45564484 45564503 AATATCAGCTTCACCGTGTG 58 45564225 45564429 GAAGATCAAGCCTTGGGTG 59 NA Rattus norvegicus 81 Plch1 ENSRNOG00000009955 ENSRNOT00000057724 1 1 1 80 2 154283532 154292304 AAGCTGCATTATAGTAACGGG 58 154283472 154283490 CTCCTTCAACAGTGAGTCC 58 NA Rattus norvegicus 81 Gal3st4 ENSRNOG00000001375 ENSRNOT00000001855 1 1 1 80 12 19590121 19590140 CTCAGAGTTCGGATACCCAG 59 19584475 19590081 TGACCTGAAGTACCTCTTTGAG 60 NA Rattus norvegicus 81 Vom1r74 ENSRNOG00000054932 ENSRNOT00000086592 2 1 1 60 4 87815423 87815441 AGTCTATCTTGGTGCTGGT 58 87815465 87815483 GAGATGATGAAGTCCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc9 ENSRNOG00000048848 ENSRNOT00000075700 1 1 1 80 1 78215200 78215420 CCTCGTGCCTATAGTGACC 59 78215138 78215156 GGACTGAGAGGATTTGGGA 58 NA Rattus norvegicus 81 Gpr137 ENSRNOG00000021145 ENSRNOT00000028707 3 1 1 81 1 222195350 222195488 AACGTATCTGACCAGGCAG 60 222195287 222195305 CCCACACGAAGAGGATGAG 60 NA Rattus norvegicus 81 Gsdmd ENSRNOG00000007728 ENSRNOT00000075917 3 1 1 80 7 116893148 116893168 CAGCTACTAGTAGACATCGGG 59 116893210 116893302 CAGACCCTGCTCTAGTGAG 59 NA Rattus norvegicus 81 Wnt9a ENSRNOG00000003066 ENSRNOT00000058327 2 1 1 65 10 45681294 45681312 AACCTCAAGTACAGCAGCA 59 45681341 45681360 CTCGCAGATCCTGCTAGAC 60 NA DesignRelaxed Rattus norvegicus 81 Lyrm9 ENSRNOG00000037204 ENSRNOT00000056192 3 1 1 84 10 66108655 66108673 TTACTTACTGCGTTGCTGC 59 66108721 66110744 AACTTGGAAACTCTGCCTG 58 NA Rattus norvegicus 81 Pipox ENSRNOG00000008798 ENSRNOT00000012154 3 1 1 80 10 64961677 64961697 AGTAGGGCTCTTAGACAAGAC 59 64961738 64962048 AGCTGACGAATTACATGCTG 59 NA Rattus norvegicus 81 RGD1564606 ENSRNOG00000029670 ENSRNOT00000048598 2 1 1 60 2 38230934 38230953 TATCCTCGAAAGAGTGCACC 60 38230973 38230994 GGAATTTGATGATGGCATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 2 2 2 80 15 4923230 4923251 CCTTTATCCCAGCAAATTTCAC 58 4921856 4923189 AGGATGTCACGACTGAGTC 59 NA Rattus norvegicus 81 Rn60_X_0691.3 ENSRNOG00000051099 ENSRNOT00000075910 1 1 1 60 X 68175197 68175216 AACACTTCCTTCGTTGAGAC 58 68175156 68175176 GGACTACAAACACTACTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr331 ENSRNOG00000030201 ENSRNOT00000044115 2 1 1 60 1 229480366 229480385 CTTCCTCAGCAATCTGTCCT 60 229480405 229480426 CATCTTTGGGACTGTAGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9b1 ENSRNOG00000042985 ENSRNOT00000031348 1 1 1 80 2 240568890 240570018 TTTCCAAGTAGAGATCAGGAGAG 59 240570057 240570076 GCCTAAGACAGCAGAAACAC 59 NA Rattus norvegicus 81 Fech ENSRNOG00000018053 ENSRNOT00000024328 1 1 1 80 18 59964488 59969486 CAACCAGAAAGGAGGAAGC 59 59964426 59964445 GTCTTGAACTTCTCCAAGGG 58 NA Rattus norvegicus 81 Raph1 ENSRNOG00000014722 ENSRNOT00000036194 1 1 1 80 9 67341274 67341293 AGTGACAAGGAAGATCAGGA 58 67333764 67341234 ATCCAAACTCTGAGTAAGTCTG 58 NA Rattus norvegicus 81 Rn60_X_0674.1 ENSRNOG00000051153 ENSRNOT00000076788 3 1 1 60 X 66474537 66474557 CACCATAAACTGCTTAGACCC 59 66474577 66474597 TTCCATGATGCCAAAGTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anapc16 ENSRNOG00000000576 ENSRNOT00000000702 2 1 1 80 20 29547560 29553095 AGAGATACTAGAAGATGGCTCTG 59 29547502 29547521 ACCTGTTTAAGTGTGGATGC 59 NA Rattus norvegicus 81 Gemin5 ENSRNOG00000002645 ENSRNOT00000044299 3 1 1 80 10 43581016 43583033 TCCATTAGATACAAGCTGCC 58 43580955 43580974 ATCTTCATTTCCAAGAGCCA 57 NA Rattus norvegicus 81 Klhl26 ENSRNOG00000020088 ENSRNOT00000027241 3 1 1 99 16 20724127 20726387 TACTTTAGGGCCATGTTCAC 58 20726449 20726467 AATCGATGATGTGACGCAG 58 NA Rattus norvegicus 81 Rn60_X_0650.1 ENSRNOG00000057091 ENSRNOT00000086663 3 1 1 97 X 64915724 64915742 CTACCGGGATGATAACGGA 58 64914925 64914943 TGGGTAGGCATTCTTCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Rarb ENSRNOG00000024061 ENSRNOT00000033048 2 1 1 80 15 10246874 10255695 GGGTAAATACACCACGAATTCC 60 10255735 10255754 GCCAGCTCACTGAATTTGTC 60 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 2 2 2 91 6 107607362 107607381 ATAGAGAAGATGGACGCGTC 60 107609343 107609799 GAAAGCTTCCCTCATGATTGAC 60 NA InUTR Rattus norvegicus 81 Olr774 ENSRNOG00000046079 ENSRNOT00000046265 1 1 1 60 3 102995663 102995682 CTTGTTGCTTCTCATCTCCT 58 102995622 102995642 ACCTGAAGAATGTTTCCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgpep1 ENSRNOG00000019639 ENSRNOT00000026597 2 1 1 107 16 20529831 20530220 ATGCTGGCAGATACCTGTG 60 20530291 20530309 CAGCATTGTAAGGCTTGCC 60 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 1 2 2 140 4 85560617 85560635 TTGAGATCATTGGCACCCT 59 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 RGD1564804 ENSRNOG00000027455 ENSRNOT00000009044 1 1 1 82 5 138277334 138277355 AGCAAATGCTACTAACAAGCTG 60 138276155 138277291 CATCTTCCAGCACCTTCCT 59 NA Rattus norvegicus 81 Cd28 ENSRNOG00000010283 ENSRNOT00000013701 2 1 1 113 9 67566736 67566754 TCAGACGTCTCCTAAGCTG 59 67566829 67571163 TTCCTTCTGCTATTTGTCCAG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718,ENSRNOT00000029723 2 2 2 122 13 96304072 96335197 AGAGTACAGAGGCAATAGTGG 59 96379673 96379691 ATCGAATGTACCCAGTGGG 59 NA Rattus norvegicus 81 AABR07030122.1 ENSRNOG00000030217 ENSRNOT00000049614 3 1 1 60 10 68588887 68588906 TTATGCCCGAGATGAAACTG 58 68588926 68588947 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr92 ENSRNOG00000022857 ENSRNOT00000029980 3 1 1 80 14 100381555 100381577 ATAGATGGTATAGGTGGACTTGG 59 100381615 100383714 CACCTTTACAGTTCCATCTCG 59 NA Rattus norvegicus 81 Dzip1 ENSRNOG00000010311 ENSRNOT00000038596 3 1 1 80 15 104157385 104158581 TTCTCCAAGGACTATGAAATGC 59 104157326 104157346 CTTCTCTTCCTCTTTCCATCG 58 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 3 2 2 80 17 27449253 27449271 CTGGTACTTGGACGACTCG 60 27446471 27449209 TGTCGATTTGCCTGATGGT 60 NA Rattus norvegicus 81 Ube2e1 ENSRNOG00000008794 ENSRNOT00000011653 2 1 1 80 15 8175743 8175764 TATGAAGGTGGAGTCTTCTTCC 59 8175803 8176467 TGTACGAAACGTAACCTTTGG 59 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396,ENSRNOT00000091263 3 2 2 85 6 58469732 58471089 GGCTCATGATTCAGAAGAACTC 59 58481276 58481296 CATCATTGTCAGGTACCTGAG 58 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 2 2 2 80 13 91732554 91735120 TGAACGTGATGCAAGAGTG 59 91732492 91732510 GGCATCTGATGTCAAAGGA 58 NA Rattus norvegicus 81 RGD1563307 ENSRNOG00000028984 ENSRNOT00000030832 3 1 1 60 1 89645973 89645991 TGCTGACGACTTAGGAGAG 59 89645931 89645951 ATAGTACTGCAAGGGATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 1 2 2 80 10 62694592 62694611 CTGGGTCATATCTTCACCAC 58 62694135 62694549 TTCTTCGAAGTTGTTCGGG 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 1 2 6 80 5 47931466 47933460 TCTACTGAAACAGCCTATTCC 57 47933501 47933520 TTGTCTCCAACTGAAATCCA 57 NA Rattus norvegicus 81 Eva1b ENSRNOG00000024818 ENSRNOT00000064972 3 1 1 63 5 144160738 144160756 GATGACTCCAGCCTGTCAG 60 144160782 144160801 TCTCAGGGTTAGCTAGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dll4 ENSRNOG00000014011 ENSRNOT00000018970 3 1 1 81 3 111137278 111137297 ACATTATGAGTGCCAACCAG 58 111137338 111137713 AAGACATATAGGCTGATCACAG 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 1 6 8 80 20 1960695 1960715 TCTATGTTCACCAAGATCTGG 57 1960549 1960653 CTCTAGGGTCTTCCTCCAC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 2 7 8 61 20 1960488 1960506 GATGTCCTGACTCTTGCCA 59 1959900 1960464 AAAGTCTCAATGGTTCGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ms4a1 ENSRNOG00000020945 ENSRNOT00000028433 3 1 1 80 1 227431321 227431339 TCTTCCAGAAGCTCGTGAC 60 227430004 227431279 GAACCACATTAGATTTGGGCC 60 NA Rattus norvegicus 81 Npvf ENSRNOG00000010806 ENSRNOT00000014437 3 1 1 82 4 80393423 80393442 CAGTGAATTGCTCTATGCCA 58 80391865 80393378 TGAACACCCGTTTCCTAGG 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 2 1 1 80 7 71161701 71162590 CTCTGATAGCATCAGGCGA 59 71162631 71162652 ATGGATGTCTTGTAGTTTCCTG 58 NA Rattus norvegicus 81 Acot6 ENSRNOG00000029637 ENSRNOT00000058101 3 1 1 80 6 107585400 107585418 TTTGAGCCAAGTGCATCTG 59 107585459 107589781 ATATTTGGACCTTTCACCTGTG 59 NA Rattus norvegicus 81 AABR07055532.1 ENSRNOG00000032529 ENSRNOT00000045741 1 1 1 80 7 5423746 5423766 CATCTACATCAAACCTTCAGC 57 5423808 5423827 AATGGGTTCAAGGAAGTGG 58 NA Rattus norvegicus 81 Sae1 ENSRNOG00000015128 ENSRNOT00000020402 1 1 1 80 1 78281212 78286753 TGACTTTGTCAGGTACTGC 57 78281150 78281168 TTCACAATTTCCTGTGCCA 58 NA Rattus norvegicus 81 AABR07057787.1 ENSRNOG00000047389 ENSRNOT00000074064 3 1 1 118 7 87919479 87919497 ACTTCACAGCGATGAGAGG 60 87919360 87919397 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Ticam2 ENSRNOG00000042070 ENSRNOT00000059466 3 1 1 136 18 40572028 40572049 CGATCTACGACAGTAACATCCT 60 40569627 40571931 AGGAGAAAGCAGTCAGCTG 60 NA InUTR Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138,ENSRNOT00000077307 1 2 2 80 5 171276126 171276144 TTACTTGCCAGAACTGGAG 57 171276186 171277680 CTTAAACAAGGCCATTTCCTG 58 NA Rattus norvegicus 81 Tmem160 ENSRNOG00000015304 ENSRNOT00000020609 2 1 1 82 1 78419095 78419113 ATGGACTTCTGGCATCAGG 60 78419159 78420101 CAGGAAGAAGCCATAGGCA 60 NA Rattus norvegicus 81 Nupl2 ENSRNOG00000010435 ENSRNOT00000013865 1 1 1 80 4 7524721 7524739 AGGTTTGGGAGTCTTCAGG 59 7521022 7524679 CTGTGAAACCTGAAATGTTGG 58 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 3 2 2 80 6 107640427 107640445 CACTCACCTTTGGTGACCT 60 107639253 107640386 TCTGAGAAGTCTTAACGTCCAC 60 NA Rattus norvegicus 81 LOC100912697 ENSRNOG00000009354 ENSRNOT00000012388 2 1 1 60 3 2396607 2396627 ACTAACTGCGAATTCAACGTG 60 2396649 2396667 ACTGGTGTAGTGCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 3 4 4 80 1 262914154 262914175 CCATAGATGATAGACTGAGCTG 58 262914215 262914425 CAAGCATTTCCTCCTTTGTG 58 NA Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 1 1 1 62 1 229938522 229938540 CAGAAGGTCTTCTTTGCCA 58 229938566 229938587 AAGCAGCAACTTGTCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Rars2 ENSRNOG00000008643 ENSRNOT00000011688 2 1 1 80 5 50075580 50078291 GATTGCCTGTCAGCTTTCC 59 50078335 50078353 TTTGAAACTGGAACAGCCG 59 NA Rattus norvegicus 81 Tsfm ENSRNOG00000048843 ENSRNOT00000071543 1 1 1 80 7 70318090 70318110 GGAGAAAGACTAAAGAAGGCT 58 70317186 70318048 CTGTCTCGCAGTTTACCTC 58 NA Rattus norvegicus 81 Acot2 ENSRNOG00000010134 ENSRNOT00000013515 2 1 1 73 6 107463728 107463746 AAGAAGCCGTGAACTACCT 59 107466075 107466093 TTTGGAAATCCCAAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Prox1 ENSRNOG00000003694 ENSRNOT00000004905 2 1 1 86 13 108406769 108406787 GAGGAACTGTCCATCACCA 59 108406836 108438727 CTCTGGAACCTCAAAGTCGT 60 NA Rattus norvegicus 81 Bend7 ENSRNOG00000022712 ENSRNOT00000032173 1 1 1 80 17 77486479 77496756 TCCTCAGATCCAGAAGTGC 59 77486417 77486440 GTTTGACAATATAGAGTCCAGCTG 60 NA Rattus norvegicus 81 Actrt3 ENSRNOG00000027908 ENSRNOT00000030700 2 1 1 95 2 116416753 116417616 TCCATCAGCTATCCAGTGG 59 116417673 116417693 GTTCAGGTTCAGGTTGTAGTC 59 NA Rattus norvegicus 81 Actg2 ENSRNOG00000029401 ENSRNOT00000042699 3 1 1 80 4 115224377 115224776 ATGACCCAGATCATGTTCGA 59 115224316 115224334 AGATGCATAGAGCGAGAGC 60 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 1 2 3 82 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Tns1 ENSRNOG00000014182 ENSRNOT00000035277 3 1 1 80 9 81202014 81204863 GTACTCGATGCCAGATAATAGTC 59 81201956 81201975 GGCTTGTACCAATACTTGGA 58 NA Rattus norvegicus 81 Wdr34 ENSRNOG00000015636 ENSRNOT00000021132 1 1 1 80 3 8599776 8599794 AAGTACCTGTTTGCTGTGC 59 8599572 8599733 CAGTTGTACATCACCTTCCC 58 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 1 3 3 81 11 70381895 70381916 CAGACTTCTAGGAGTGAATCAC 58 70359774 70381855 GAAAGAAATCTTCTCCGTTCG 57 NA Rattus norvegicus 81 Vom1r83 ENSRNOG00000058204 ENSRNOT00000077129 3 1 1 60 4 88185622 88185641 CATAGCAGCAACAACATGAG 58 88185663 88185682 GAATCAAGATGGTCTGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn10 ENSRNOG00000028074 ENSRNOT00000028997 3 1 1 81 3 2897113 2897131 AGTCTGCGAGAATTCCTGG 60 2897176 2897669 CACAGGAATCGTCTTTCGG 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899,ENSRNOT00000073798 1 2 2 80 1 99447877 99447896 TCGATCAACTGGAAACAGTG 58 99447938 99449090 GAGGACCATCTGTCCTAGAG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000086783 2 1 4 82 14 85883639 85886712 GAAAGAAGGAGTGAAGCAGAG 59 85886756 85886774 CTGTGGCAGCTCTAGAGTC 60 NA Rattus norvegicus 81 Bag3 ENSRNOG00000020298 ENSRNOT00000027616 1 1 1 80 1 199958353 199958373 CAGATAAACAGTGTGGACAGG 59 199958415 199959925 GAGACTGAGATCGCTCAGG 59 NA Rattus norvegicus 81 Cd40 ENSRNOG00000018488 ENSRNOT00000055148 3 1 1 80 3 161530536 161533116 ATACCCTCTGTGGTTTCCAG 59 161533156 161533177 CAAAGATGGTGATGAGGATGAC 59 NA Rattus norvegicus 81 Psx1 ENSRNOG00000043179 ENSRNOT00000066033 2 1 1 60 3 574295 574314 GATGGAAGGAAGACATGCTG 59 574254 574273 TTGGTGGATGTTGTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a3 ENSRNOG00000006878 ENSRNOT00000009473 2 1 1 80 6 50737093 50737115 GATAAAGGAATGGCTTCTCAGTG 60 50737154 50739193 GCAAATGCTAAACCTTGCAG 59 NA Rattus norvegicus 81 Kremen2 ENSRNOG00000004122 ENSRNOT00000005718 3 1 1 90 10 13079134 13079864 AACTTCTGTAGGAACCCGG 59 13079062 13079080 GGATATCACAGTAGCGCCA 59 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 1 4 4 80 15 8895308 8898163 GATGTCTTCAGATCGCCCA 60 8895246 8895264 TGTTCAAAGGCCAACAGGA 60 NA Rattus norvegicus 81 Mt1 ENSRNOG00000038047 ENSRNOT00000057898 1 1 1 86 17 78793394 78793412 CAGATCTCGGAATGGACCC 60 78793462 78793480 ATTTGCAGTTCTTGCAGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Fcf1 ENSRNOG00000004723 ENSRNOT00000006297 3 1 1 80 6 108802043 108802064 ATCCCTTGTATAACCGATTGTG 58 108802105 108805105 TTTGGCGATTCTTAGTGCC 59 NA Rattus norvegicus 81 Cd72 ENSRNOG00000017485 ENSRNOT00000060442 3 1 1 80 5 58944942 58944962 TATTGGATTGAGCAGATGAGC 58 58943670 58944900 ATGAGAATCGGACCTCCTC 58 NA Rattus norvegicus 81 Lrrc46 ENSRNOG00000009902 ENSRNOT00000013542 3 1 1 80 10 84974093 84974112 AAGGGATTACCTGTATCGGG 59 84973562 84974050 TGCGCTGGATCTTATTCGA 59 NA Rattus norvegicus 81 Samd10 ENSRNOG00000036719 ENSRNOT00000029386 1 1 1 128 3 177093168 177093186 GACAAGCTGCAGAGAATGG 59 177092901 177093076 GTTTCCGAAGGAAGCTTGG 59 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360,ENSRNOT00000066549 2 2 2 81 5 151107319 151112101 GACGATCGAAAGAAGGTGGA 60 151107257 151107276 CTCTGGTCTTCTGAAGGACG 60 NA Rattus norvegicus 81 Ptgr1 ENSRNOG00000015072 ENSRNOT00000020335 2 1 1 80 5 76118428 76120930 TAGCTAAGCTCAAGGGCTG 59 76118366 76118389 CGAATCCAAGCTTCTTAAGATAGG 60 NA Rattus norvegicus 81 Il3ra ENSRNOG00000001325 ENSRNOT00000001792 2 1 1 60 12 18537795 18537813 CACTCTGCAGATCAACCAG 58 18537571 18537678 TGTCTCATATACCATCTCAAGC 58 NA DesignRelaxed Rattus norvegicus 81 Tor1a ENSRNOG00000006894 ENSRNOT00000064660 3 1 1 80 3 9803651 9806498 ACATCACCCTGTATAAGGACC 59 9803591 9803611 CAAAGATGAAGATGGACCGAG 59 NA Rattus norvegicus 81 Zfp652 ENSRNOG00000017001 ENSRNOT00000022811 1 1 1 80 10 83561531 83561550 TCTTTCAAGCGCAGTATGTC 59 83561593 83562047 GTCGCAGTTCTCACATCTG 59 NA Rattus norvegicus 81 Gng10 ENSRNOG00000025040 ENSRNOT00000020707 3 1 1 137 5 76182232 76185944 TGGAGAGGATCAAGGTCTC 58 76186044 76186063 AAAGTAAAGCACAGGACCTG 58 NA Rattus norvegicus 81 Cwc25 ENSRNOG00000004091 ENSRNOT00000005426 2 1 1 80 10 85691751 85692216 GCTTACAGGTGAGGGACTC 60 85691689 85691708 GGGAATGGTTCTTTACTGCC 59 NA Rattus norvegicus 81 Olfm4 ENSRNOG00000013280 ENSRNOT00000047572 1 1 1 80 15 62407027 62407045 TTACCCGAGACTACGACTG 58 62407088 62412300 GGAAAGTGACTGAGACAGAG 58 NA Rattus norvegicus 81 Olr646 ENSRNOG00000049365 ENSRNOT00000074443 2 1 1 60 3 77018412 77018435 CTCCTAAGTTGATTATTGACTCCC 59 77018453 77018472 ATGCAACCTTCAAATGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef2k ENSRNOG00000016448 ENSRNOT00000022726 2 1 1 80 1 190817934 190817952 AGGTTCTGATCAAGATGGC 57 190819631 190820058 AGTTGGAGAGTTTCTTCGTC 58 NA Rattus norvegicus 81 Ift20 ENSRNOG00000008891 ENSRNOT00000011795 1 1 1 81 10 65807941 65807962 ACCTCCTGATTGACACTATCAC 60 65808004 65808147 ATGTCCTTGGCCATAGCTG 60 NA Rattus norvegicus 81 RGD1560289 ENSRNOG00000022155 ENSRNOT00000029055 2 1 1 80 4 123804617 123804637 TATTATTGAGTTGCCTGACCC 58 123804678 123805603 ATCCTTTCGGCTTCTATGTG 58 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 2 3 3 93 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558985 254670939 GATCCCAAGGTACCTGTCG 60 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093,ENSRNOT00000067866 3 2 2 80 10 46621008 46621026 TCTTCCTCCGCTATGAGAG 58 46617381 46617858 CTTCACTTAGTACTCCATTGCT 58 NA Rattus norvegicus 81 Rn60_13_0801.3 ENSRNOG00000051352 ENSRNOT00000076569 1 1 1 60 13 75165423 75165441 TATGCCAAGGACCCTTCTC 59 75165381 75165399 GGACAAAGCCTAGAATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013464.1 ENSRNOG00000023965 ENSRNOT00000041583 1 1 1 80 2 238340223 238369513 ACTGAGAAGCAAACAGATTGAC 59 238340164 238340183 TTGGCTGAAATCTGATGCAC 59 NA Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650 2 1 2 80 11 75955068 75955086 ATTTCCTGCAGATGCATCC 58 75955124 75980380 GAATTAGATTGAAGAGGGTGTAGTC 59 NA Rattus norvegicus 81 Lcn8 ENSRNOG00000017161 ENSRNOT00000023062 3 1 1 80 3 2873090 2873108 TCAAAGGAGGGTAGAAGGC 59 2873151 2873593 CTTCCTGAGCTGTTGTACAC 59 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 2 1 1 80 19 26024165 26024186 AGTGTAATTCTCACTTCTCGAG 58 26024227 26024968 GGAGTACAGGTCATCTCCA 58 NA Rattus norvegicus 81 Olr651 ENSRNOG00000047268 ENSRNOT00000048750 1 1 1 60 3 77110154 77110175 TCTCTACTCTTTAAGGAACCAC 57 77110115 77110133 GACACAAGTGAACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 3 1 1 80 1 31416644 31416662 AGAAGTTATGGGATGCCCA 58 31416700 31424101 GGTCAGAATAGAAGTCATATCTGTC 59 NA Rattus norvegicus 81 Xkr6 ENSRNOG00000011634 ENSRNOT00000015540 1 1 1 84 15 46946358 47143230 GTGTGGAGGTATATCCGCA 59 47143278 47143296 TCATAGCCCAGTAGAAGCG 59 NA Rattus norvegicus 81 Slc43a2 ENSRNOG00000003835 ENSRNOT00000005100 3 1 1 80 10 63689949 63691005 AAGTAACCCAGACTCGCTC 59 63691048 63691067 GTAAACGTCATGCACATCCC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094,ENSRNOT00000038132 3 2 2 80 9 65945892 65945910 GCTATGTCGTGTGGTACGA 60 65944483 65945849 AACATAAACTGTCGTCTGGC 59 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942,ENSRNOT00000090985 3 2 2 60 8 50530565 50530585 GAGTCTGATATAGCTGTGGTG 58 50529555 50529574 CTTTCAGGGATTTGAAGCGA 59 NA DesignNoJunction Rattus norvegicus 81 Tp53i13 ENSRNOG00000022615 ENSRNOT00000010691 2 1 1 98 10 62650826 62650844 TCTCCTGAGTCTTCACGAG 58 62651099 62651327 CTTGGTAACACCTGTGGAG 58 NA Rattus norvegicus 81 Elf5 ENSRNOG00000008282 ENSRNOT00000011035 1 1 1 81 3 93360024 93360042 GAGGAGTTCATTGAGGCAG 58 93360087 93363469 AGGAATAACCTTGTGAGCG 58 NA Rattus norvegicus 81 Pon2 ENSRNOG00000009112 ENSRNOT00000036460 3 1 1 82 4 30349412 30351677 TGAGCTCCTTCCAAGTGTG 60 30349348 30349366 GGTCGGAGAAGTAGTGGTC 59 NA Rattus norvegicus 81 Apoa4 ENSRNOG00000055909 ENSRNOT00000080658 3 1 1 80 8 50538237 50538259 CATTAAACATGCCGATGACCT 59 50538298 50538319 TCTGTTTCCTTGGTTAGATGTC 58 NA Rattus norvegicus 81 Tmem67 ENSRNOG00000016187 ENSRNOT00000021839 1 1 1 80 5 25697299 25697318 AACATCATTACCTTTGGGCT 58 25696549 25697256 AGCTACTGTCTTGGTTCAC 57 NA Rattus norvegicus 81 AABR07012299.1 ENSRNOG00000029177 ENSRNOT00000044052 3 1 1 136 2 192416713 192433862 TGAACCTTGTTCACCTCCA 59 192433962 192433980 CTGGACACTTTGGAGGAGG 60 NA Rattus norvegicus 81 AABR07053533.1 ENSRNOG00000049007 ENSRNOT00000071591 3 1 1 80 3 112607876 112607894 AAGCCATTGAACTTCAGCC 59 112607232 112607833 AGCTCAAATGAGAAACCTGG 58 NA Rattus norvegicus 81 Rad18 ENSRNOG00000005907 ENSRNOT00000066468 1 1 1 80 4 144596537 144600112 TGCATCCTAAATCAGCTGC 58 144596475 144596493 GTTTACTTGCTTCAAGGCG 58 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 3 1 1 80 14 86521420 86521645 GTTTCACTCCTGGGTATGC 58 86521689 86521707 GTGTGAAGTCAGTTGAGGG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 2 4 5 81 X 71311061 71311525 TCCACTGAGAGCATTCCAG 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Drosha ENSRNOG00000013451 ENSRNOT00000048026 3 1 1 80 2 62913350 62913368 GACCACTTTGCAAATGCAG 58 62913412 62920169 GCTTGATTGCCTCTTCTCC 59 NA Rattus norvegicus 81 Pard3b ENSRNOG00000024345 ENSRNOT00000040778 1 1 1 80 9 69130289 69130309 AAGCAGAAAGAGGAACATGAG 58 69130350 69230686 CTTCTTTCCGAATCTCAGCA 58 NA Rattus norvegicus 81 Rbm22 ENSRNOG00000019235 ENSRNOT00000026087 2 1 1 80 18 55834265 55834283 CGGAGGATAAGACGATCAC 57 55834325 55836120 AGAAATGATTCCTGAGGTCTG 58 NA Rattus norvegicus 81 LOC498316 ENSRNOG00000048659 ENSRNOT00000073985 2 1 1 132 13 109646499 109648747 GGTGTTACTAAAGGACCGC 58 109648843 109648861 TTCTCGTTCAGCTCTTCCA 59 NA InUTR Rattus norvegicus 81 Olr184 ENSRNOG00000017341 ENSRNOT00000023279 3 1 1 60 1 169903406 169903424 CACTGGTGTTTCTCCTCCT 59 169903364 169903383 TAAGTGTGAGGGATGATGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar5 ENSRNOG00000039869 ENSRNOT00000061209 1 1 1 60 1 22547771 22547792 ATTTCAATTCAGCCTGTAACCC 59 22547732 22547754 GCCTTCCTAAACCATCTATACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar5 ENSRNOG00000039869 ENSRNOT00000061209 2 1 1 60 1 22547751 22547772 CCCATCATCTATGTCTTCTCGT 60 22547712 22547730 GGCTCAGGAGGAGTTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 1 2 2 80 14 13056813 13056833 TTGGTATGGGAAAGAACTGAC 58 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Nudt22 ENSRNOG00000021158 ENSRNOT00000028734 1 1 1 80 1 222247956 222247979 GGAATTATTATCTGAGTGGAGGAC 59 222247672 222247918 GTCTCTGTACCCTCTGTGTC 59 NA Rattus norvegicus 81 Akr1c13 ENSRNOG00000050040 ENSRNOT00000029049 3 1 1 80 17 69641012 69641522 GACACATGGGAGATGTTGG 58 69641564 69641584 CTGCTTGTGGTTAAAGTTGGA 59 NA Rattus norvegicus 81 Olr1617 ENSRNOG00000046129 ENSRNOT00000040603 1 1 1 60 15 27280555 27280578 GTTCTCATCTCACAGTAGTTTCAC 60 27280593 27280615 GGGCTCACATACATTATCATCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd6 ENSRNOG00000006751 ENSRNOT00000009249 3 1 1 80 15 12408475 12411512 GATAGGTGACAAGGAGGGAG 59 12411554 12411573 ATATCTAGTCGGTGACCCAG 58 NA Rattus norvegicus 81 Mlh3 ENSRNOG00000006699 ENSRNOT00000033493 1 1 1 80 6 109087847 109087866 CGACCTTGTTCTTCCTTTCC 59 109086647 109087804 GCAGCATCTACAGCATCTC 59 NA Rattus norvegicus 81 Pikfyve ENSRNOG00000015158 ENSRNOT00000020447 1 1 1 80 9 71982412 71991278 TCCATTTCCTTTCGATCCAG 58 71991321 71991339 GGCTCTTTCTCACAGACAG 58 NA Rattus norvegicus 81 AABR07064392.1 ENSRNOG00000046896 ENSRNOT00000072117 1 1 1 87 6 78817531 78817549 CGTTCGGTTCCTAACTGTG 59 78816815 78817483 TATAATGGTGTACCCAGCTCTG 60 NA Rattus norvegicus 81 Batf ENSRNOG00000008588 ENSRNOT00000011563 1 1 1 86 6 109562844 109562862 TTACAACCATGCCTCACAG 58 109562912 109565174 CATCATCGGATGAGTCCTG 58 NA InUTR Rattus norvegicus 81 Fn3k ENSRNOG00000036659 ENSRNOT00000054915 3 1 1 82 10 110640963 110641893 GGCTACAGGTGAAGATCCC 60 110641938 110641957 GTTTCCAGACCAGAGGTCTC 60 NA Rattus norvegicus 81 Gpr165 ENSRNOG00000012995 ENSRNOT00000067298 2 1 1 80 X 65799244 65799634 GAATTTGGCAACACAACAGAG 59 65799673 65799694 GTCAAGGTATTTCCATGTGGAC 59 NA Rattus norvegicus 81 AABR07060778.1 ENSRNOG00000005630 ENSRNOT00000007437 3 1 1 60 4 93405928 93405947 TTGTTGGCAAGAAATGTGCT 59 93405887 93405905 TTCACCACCATCCGATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 3 2 2 80 12 13718146 13718165 GGTCAGGTCATCACTATCGG 60 13718207 13718316 GGATTCCATACCCAGGAAGG 60 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 2 2 2 80 1 29445144 29457383 CCTTTGTTGGAACAGGTGG 59 29457424 29457445 TGTTGTAGTCTATGTCTGTCCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 3 2 2 80 1 29443793 29443812 TGGAGGACTATGGTTTGGAC 59 29443854 29445014 GTCCATCTGCAATCCATCTG 59 NA Rattus norvegicus 81 AC105693.1 ENSRNOG00000058416 ENSRNOT00000079544 1 1 1 80 2 143984451 143987234 CTTATCAACACTCAGACTTCCG 59 143987274 143987293 TGTTCAGTTCGTAGTAGGCA 59 NA Rattus norvegicus 81 Olr201 ENSRNOG00000017387 ENSRNOT00000023349 2 1 1 60 1 170174852 170174872 TTGTATTCCTGCTGAAGAGAC 58 170174812 170174831 CAGTATGAGTGTGGGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 1 1 1 80 1 219992614 219994959 GACAAAGTGGACAAGGAAGG 59 219995002 219995020 GTCCTCCAGCTTCTCTGAC 60 NA Rattus norvegicus 81 Nucb2 ENSRNOG00000020456 ENSRNOT00000027752 1 1 1 80 1 185120766 185122212 TAGAGGAGATAAGGAGCGG 57 185120704 185120722 TCAGTTCATCCAGTCTCGT 58 NA Rattus norvegicus 81 Nucb2 ENSRNOG00000020456 ENSRNOT00000027752 3 1 1 80 1 185120767 185122215 ACATAGAGGAGATAAGGAGCG 59 185120707 185120725 GTTCATCCAGTCTCGTCCT 59 NA Rattus norvegicus 81 Egln3 ENSRNOG00000005053 ENSRNOT00000007219 2 1 1 96 6 75055998 75056017 GGTTATGTTCGTCATGTGGA 58 75055128 75055939 CTCCATGTAACTTGGCGTC 59 NA Rattus norvegicus 81 Mapkbp1 ENSRNOG00000007018 ENSRNOT00000009430 1 1 1 80 3 111808825 111808843 TTTAACATTAGCAGCGGGA 57 111808886 111809034 TGTCTGCACCTTAATGAGAG 57 NA Rattus norvegicus 81 Utp11l ENSRNOG00000007174 ENSRNOT00000009882 1 1 1 94 5 142669973 142669995 CGATAGGGTCTATAATAGACCCA 58 142667652 142669919 CTTTGGCTATCCGCTTGAG 59 NA Rattus norvegicus 81 Grpel2 ENSRNOG00000042682 ENSRNOT00000065046 1 1 1 86 18 57042621 57043528 GGATTTAACACTGAGATACCAGAG 59 57042558 57042576 ATCTTCGCATCTTCCACAC 58 NA Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 3 1 1 80 13 113798012 113802936 CAGTTTACAGTGAATCAGGATATCC 60 113795589 113795608 TCAAAGCAATGATCCATGCA 59 NA Rattus norvegicus 81 Olr282 ENSRNOG00000047675 ENSRNOT00000044753 1 1 1 60 1 173455578 173455598 GAATCCACTAATCTACAGCCT 57 173455538 173455557 CCATAATTTCAACACAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075974,ENSRNOT00000075878,ENSRNOT00000091249,ENSRNOT00000077505 2 5 9 86 4 14070569 14070590 CGAAGTGTTGAAACTTTCTGAG 58 14070635 14071125 CCTGGTTCAACTAATTCATGC 58 NA Rattus norvegicus 81 Vom2r30 ENSRNOG00000038479 ENSRNOT00000046047 2 1 1 80 1 74596524 74596544 AGGATTGAATTGGATGTCGTC 59 74594765 74596485 TAGGAAATCTGAAGGAAACGTG 59 NA Rattus norvegicus 81 Ier3ip1 ENSRNOG00000030004 ENSRNOT00000050772 1 1 1 112 4 132141670 132142355 ATTGTAGCAGAGCAGGGAC 60 132151550 132151568 CATCCAGCTACCTCTTGGT 59 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000010171 1 1 2 80 7 142918578 142919389 CTCATCACTGATCGACATGG 58 142919432 142919450 TTCCTTCAGACAGCTAGCA 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 3 2 5 83 1 100134799 100134915 CCCTTATATGGGAATTCCCTG 58 100134959 100134978 CTTTGTAGGCTTTGATGCAC 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000079192,ENSRNOT00000084717,ENSRNOT00000044408,ENSRNOT00000019969,ENSRNOT00000087441 1 6 6 80 4 154712897 154712915 AAACATTGTCTCTGCTGCT 58 154712957 154713241 TCAAGATATCACCCATCACAG 57 NA Rattus norvegicus 81 Efhd2 ENSRNOG00000013783 ENSRNOT00000018864 2 1 1 101 5 160410285 160411462 CTTCCGGGAGTTCCTTCTG 60 160410202 160410222 GAGACATCAATCTCGGAGAGG 60 NA Rattus norvegicus 81 Kb15 ENSRNOG00000009105 ENSRNOT00000038242 1 1 1 80 7 143211821 143212666 TGGTACCAGACCAAGTATGAG 59 143211761 143211782 GATCTCCATCTTGGTAGTACGG 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 3 2 2 87 8 116327688 116327706 CTCTACCATCGGTGAGAGC 59 116327755 116328262 GCAGTTCTCCATACTTGAAGC 59 NA Rattus norvegicus 81 LOC103690317 ENSRNOG00000060185 ENSRNOT00000086886 3 1 1 80 7 140202500 140202519 CCCATGGATCTGTACTTGAG 58 140198624 140202457 GACATCCAAGTCGTCACTG 58 NA Rattus norvegicus 81 Pgf ENSRNOG00000005650 ENSRNOT00000007790 3 1 1 80 6 108999025 109003098 CTCAACAGAAATGGAAGTGGT 59 108998965 108998983 ATGTACACCAGCTTCTCCA 58 NA Rattus norvegicus 81 Appbp2 ENSRNOG00000027654 ENSRNOT00000033684 1 1 1 80 10 72527340 72527358 CTGCCTTCAGTTGTGTACC 59 72522829 72527296 ACATGAAGCAACCTCACAC 58 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 3 1 1 85 3 8832804 8835814 ACTCAAGAAGTTCCAGGAGG 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Mettl10 ENSRNOG00000017137 ENSRNOT00000023121 1 1 1 60 1 204836773 204836793 ATAACCTCCTGTAATTGGACC 57 204831911 204836754 GTTCAAATCCTTCACTGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 Klhl41 ENSRNOG00000007461 ENSRNOT00000009969 2 1 1 80 3 55914711 55914833 TATGCTATGATCCTGTGGCT 58 55914875 55914894 GTGAGATCACATTATGGCCA 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 3 2 4 96 13 79042690 79042708 AGGCAAATTTCTGGACGTG 59 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 Epm2a ENSRNOG00000040242 ENSRNOT00000061930 3 1 1 81 1 5449249 5505162 CACTGGGAAGGAAATGGAC 58 5505205 5505225 GGAGACAATAAACACCATCCA 58 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 2 1 1 80 5 131290467 131305094 CTAGACAATGGCAAGGTCCA 60 131305135 131305155 TCCTTGGGTAACTTGTAGCTG 60 NA Rattus norvegicus 81 Pou4f2 ENSRNOG00000012167 ENSRNOT00000016422 3 1 1 105 19 33160693 33160711 AGAGCTTGTCTTCCAACCC 60 33161212 33161230 TACTCTGGGAGACGATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Rab5b ENSRNOG00000006130 ENSRNOT00000061878 3 1 1 80 7 3108397 3109796 GGAGTATGAAGAGGCTCAGG 59 3108336 3108356 ACGTTCATAGCAGTCTTAGCT 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 2 2 4 96 X 71971511 71972296 TACTGTGATACACAGGTCCA 58 71972355 71972373 CTTCACTGGTGAATGGGAG 58 NA Rattus norvegicus 81 Sugp2 ENSRNOG00000020269 ENSRNOT00000027457 3 1 1 81 16 20921849 20925626 CTGCTTACTGGTTTCTGTCTG 59 20921788 20921806 TTCAGTCGCTGTGACTCTG 60 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 1 2 2 80 10 4566838 4566858 ATTGCTCAACAATCCAGACAG 59 4566895 4567474 CATGATCTGATTACCAAGTACCTG 59 NA Rattus norvegicus 81 Olr614 ENSRNOG00000049509 ENSRNOT00000043599 3 1 1 60 3 76368056 76368076 GCTCTATACAGTCCTGATTCC 58 76368016 76368034 ATCTTTGTTCCGTAGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486,ENSRNOT00000090739 2 2 2 89 5 107747693 107747711 GAAGTCATTGCAGTGCCAG 60 107747761 107748550 TAGCCATTTCTATGAGGACCTC 59 NA Rattus norvegicus 81 LOC100363642 ENSRNOG00000046832 ENSRNOT00000072047 3 1 1 60 X 73602260 73602280 TTTCCTAGCATATTTCCACCC 58 73602220 73602239 TTTGGAACTCAGGTTCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r29 ENSRNOG00000048033 ENSRNOT00000075596 2 1 1 60 1 68222069 68222087 CTCACCAGAATCTCAAGCC 58 68222111 68222129 AAATGCCAGGAAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 2 1 1 74 7 34093431 34102292 TTTCTTCAGTGCACAGACG 58 34093375 34093394 CTCCAGAAATGTATGCTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423,ENSRNOT00000089292 3 2 2 80 4 31565933 31565951 TCTAGAAAGAACCCTGCCC 59 31565992 31566582 GTCAATCCAGTAGTAATCGCTC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802,ENSRNOT00000041346 1 2 4 80 17 72218773 72219502 CAACCCTGAAAGACATTACCA 58 72219543 72219562 CTGCCACCATCTTCATAGAC 58 NA Rattus norvegicus 81 Mien1 ENSRNOG00000007227 ENSRNOT00000009485 1 1 1 80 10 86392431 86392450 GAGATTGAGATCAATGGGCA 58 86392281 86392390 AGCTTCCATGAGATCTTTCTC 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000075887,ENSRNOT00000087506 1 2 4 80 13 78196586 78198065 TGAGAAACTAATGCAGGAACAG 59 78196527 78196547 GATGCGTACATATGAGCTTCC 59 NA Rattus norvegicus 81 Nat9 ENSRNOG00000003264 ENSRNOT00000004372 2 1 1 90 10 103733123 103733142 AGGTCTGACCAAGTTTGAGG 60 103732588 103733072 CATAGCCACCTGCTTAAAGTG 59 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 1 2 2 80 9 81846862 81847938 CCTTCTCGACTCAAGTACCA 59 81846801 81846819 CTTGCACTTGTACCCACAC 59 NA Rattus norvegicus 81 Mir3592 ENSRNOG00000035625 ENSRNOT00000053748 3 1 1 60 6 133884224 133884242 GTTGTCCGTGAATGATTCG 57 133884182 133884202 CTTGAAGAGAAGTTGTTCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde4c ENSRNOG00000019518 ENSRNOT00000026457 3 1 1 80 16 20443896 20444312 CATAGACATGGTACTGGCCA 59 20443835 20443853 TTCTTGGTCTCCACCATGG 59 NA Rattus norvegicus 81 Mphosph6 ENSRNOG00000050087 ENSRNOT00000072416 3 1 1 80 19 50358445 50360119 CCTGAAGTTGAGAAGTTAATGC 58 50358386 50358404 GACCTCTACAGTCTCCTCC 58 NA Rattus norvegicus 81 Ksr2 ENSRNOG00000028630 ENSRNOT00000046190 2 1 1 80 12 44636810 44688767 GCCAATTTCTCTGCAAACAC 59 44636749 44636769 TTTGATGGAATTGCCAAGGTC 60 NA Rattus norvegicus 81 Sf3b2 ENSRNOG00000020412 ENSRNOT00000068497 1 1 1 80 1 220653106 220655679 CTATCCCTGAGAGCTGTCC 59 220653044 220653062 AAAGTGGCTTCCCAGTCTC 60 NA Rattus norvegicus 81 Ecm1 ENSRNOG00000021166 ENSRNOT00000028740 3 1 1 80 2 197856151 197856170 ATCCAGAACATGACTGTCCG 60 197855780 197856109 GAAAGCCAGTTTCTCCTCCT 60 NA Rattus norvegicus 81 Tmem201 ENSRNOG00000023152 ENSRNOT00000047763 3 1 1 80 5 166688400 166688947 GGCTTTCAAGAGAATGGAGAC 59 166688340 166688358 TACACTGCTCACCACATGG 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719,ENSRNOT00000052333 2 3 3 81 4 33639425 33639443 GTTTGCAGAGGAAATCGGT 59 33639487 33640445 CATTGCCTCCTTGATTTGGT 59 NA Rattus norvegicus 81 LOC683674 ENSRNOG00000024567 ENSRNOT00000039191 2 1 1 82 12 13302907 13302925 ATCTTTAGTGCCAGCCCTC 60 13302969 13306891 ATGAGGTCATCTGATGACAGG 59 NA Rattus norvegicus 81 Bcl9l ENSRNOG00000012420 ENSRNOT00000064041 1 1 1 84 8 48832366 48832384 CTCAGATGACGAGTTGCTG 58 48832432 48832654 GTTGTTGCTGATACCTGGC 59 NA Rattus norvegicus 81 LOC100910849 ENSRNOG00000047082 ENSRNOT00000075353 2 1 1 123 11 72934703 72934721 CAGTCACCTGAGGTCATGG 60 72932754 72932772 AGAAGGTAGAGCCAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 2 1 1 60 4 165828409 165828427 TTTGCCTTTCTCTTGTGGT 58 165828367 165828386 TCACAGTGAATGAGAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911674 ENSRNOG00000005408 ENSRNOT00000007490 2 1 1 191 10 45065461 45071528 CCTCAACGGATGTCATGAC 58 45064554 45064572 TTCTGGATGTACCAGCAGG 59 NA Rattus norvegicus 81 Hagh ENSRNOG00000014743 ENSRNOT00000020192 1 1 1 80 10 14218976 14219000 CTACATGTACCTGATCATTGATGAG 59 14219034 14219720 GTTTCTATAACCTTCTGTGGCTG 60 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 2 1 1 60 4 161278131 161278151 AACTGCAAATCACCAAAGGAG 60 161278091 161278109 TCATCATTGAGCCACTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir211 ENSRNOG00000035648 ENSRNOT00000053771 1 1 1 60 1 125042158 125042176 CTTTGCCTAGGCCTCTGAG 60 125042200 125042218 GTAGAGGTGACCACTGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001592.3 ENSRNOG00000059551 ENSRNOT00000075019 2 1 1 60 1 54035201 54035219 AAACTCCCATTTGAGGCTG 58 54035159 54035177 AAGTCCCTAACACAACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp770 ENSRNOG00000043037 ENSRNOT00000067646 2 1 1 60 3 105662488 105662507 AGAATCCTCTTGATGTCCAC 57 105662447 105662466 TCTTCACACTCTGAACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkv ENSRNOG00000058938 ENSRNOT00000090239 2 1 1 80 8 116726903 116727147 CATCTCCCATGAATGGATTTCTG 60 116727187 116727205 TTCTTCTCGATCTGGGCAC 60 NA Rattus norvegicus 81 Grb7 ENSRNOG00000006990 ENSRNOT00000009299 1 1 1 80 10 86407940 86407960 CTGGTTTCATGGACGAATCTC 59 86408001 86408123 ACCAGGAATACACCATCCAC 60 NA Rattus norvegicus 81 LOC103690997 ENSRNOG00000060271 ENSRNOT00000078636 1 1 1 60 1 60332709 60332730 TCATTATCTCCAAAGGACTCCC 59 60332670 60332689 TTGAATAACTGGTTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac11 ENSRNOG00000006824 ENSRNOT00000008962 1 1 1 80 4 122793070 122795937 TGCTAAAGAGGCCATCAGG 60 122795981 122795999 TTCCTCTCCACCTTCTCCA 60 NA Rattus norvegicus 81 Cxxc4 ENSRNOG00000045764 ENSRNOT00000072196 1 1 1 80 2 239415058 239415079 GCAACTAATTAAAGGCAGACTG 58 239415117 239417631 CTCCAACTGTTACAACAGTCTC 59 NA InUTR Rattus norvegicus 81 Usp6nl ENSRNOG00000017644 ENSRNOT00000046266 1 1 1 80 17 75777937 75778047 GTGTTTCCTTGACCGAACTC 59 75777876 75777894 GTGAGAATTCGCTCTCCCT 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 3 1 1 81 1 167000680 167005711 GATTCAAGATCTGATAAGCGAGG 59 167000621 167000639 CTGGGTCAGTGACTTTCCT 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368 2 1 2 97 18 52033277 52036400 TATTCACAAAGCACCCATGC 59 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368,ENSRNOT00000077491 3 2 2 98 18 52036435 52036457 CCTTTGGACTCTTGAGAAATCTC 59 52032621 52032639 GAAGTGTGATGTCCACCTC 58 NA DesignNoJunction Rattus norvegicus 81 AC097129.1 ENSRNOG00000031408 ENSRNOT00000048768 2 1 1 93 4 119583582 119587501 ACTGTCCAGGATCCATGAC 59 119583507 119583528 GTCTTTAATCATGCAGGAGGAG 59 NA Rattus norvegicus 81 Srrm2 ENSRNOG00000058561 ENSRNOT00000091287 3 1 1 80 10 13148418 13148729 AAACACAGGTCTCCTACTCC 59 13149931 13149949 AGCTGGTGTTGTACTTCGA 59 NA Rattus norvegicus 81 Olr292 ENSRNOG00000057889 ENSRNOT00000083924 3 1 1 60 1 212886221 212886240 TCTATACCTACATTCGCCCT 57 212886263 212886281 ATGGACACCACCTTATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr832 ENSRNOG00000048539 ENSRNOT00000049091 3 1 1 60 4 148711528 148711548 TGTTTCATACAAGCCTTCGTC 59 148711488 148711506 CAGCCATGAGAAGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 2 1 1 80 2 189639414 189639610 CACCCTCCCTAGAAATTCTG 57 189639650 189639671 CCATGATTTCCTCATCATACAC 57 NA Rattus norvegicus 81 Dmrta1 ENSRNOG00000024093 ENSRNOT00000038972 1 1 1 131 5 108278852 108278870 ATGACTGTAGCTGCTCTGG 59 108281474 108281494 GCATGACTCACAGTTACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Lrfn3 ENSRNOG00000020839 ENSRNOT00000028275 2 1 1 80 1 88820048 88823499 TCCTCGTTTACAGGATGATCC 59 88819988 88820006 ACAGATCATAGGTACGGCC 59 NA Rattus norvegicus 81 Olr213 ENSRNOG00000048519 ENSRNOT00000046171 2 1 1 60 1 170840577 170840595 TTTGCCTACATGAGACCCA 59 170840535 170840555 ACACAGAGACAACCTTATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scx ENSRNOG00000021812 ENSRNOT00000029768 1 1 1 224 7 117519615 117519633 TACATTTCTCACCTGGGCA 59 117519818 117520724 GTCTTTGCTCAACTTTCTCTGG 60 NA DesignRelaxed Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 1 2 2 82 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019870 77019889 GCTGAGTTTCTGTTGACTCC 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 1 2 2 80 19 52240450 52240468 CAGTGGAAGATGCAGACCT 59 52240511 52242699 GAGATGTGACCTCTTCAGGG 60 NA Rattus norvegicus 81 Nim1k ENSRNOG00000016353 ENSRNOT00000021964 2 1 1 141 2 52492488 52492506 TAGCAGAGCCATAGGAACG 59 52465409 52492383 AGATGACAGCTCATCCTCG 59 NA InUTR Rattus norvegicus 81 Vom1r2 ENSRNOG00000034119 ENSRNOT00000052300 3 1 1 60 1 86362705 86362726 AGAAACGTGTCCATTAGTACCA 60 86362747 86362765 GACTGATGGTGATTGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car11 ENSRNOG00000021017 ENSRNOT00000028540 1 1 1 80 1 101685245 101685263 TGTTTGGAGCTCGAGATGG 60 101685307 101685537 AGTGGATTAGCTGCACCTC 60 NA Rattus norvegicus 81 Nap1l5 ENSRNOG00000007808 ENSRNOT00000010263 2 1 1 86 4 89150635 89150653 GAGGAAGAAGAGGAGGCTG 59 89150308 89150586 CAGTCTCAAGTCTGTCAGCT 60 NA InUTR Rattus norvegicus 81 Vrk3 ENSRNOG00000026517 ENSRNOT00000035748 3 1 1 85 1 100776906 100776924 TCAAGTGGCTTTATGGGTC 57 100776971 100780464 GTCCTGATACTTCTGCTTCTG 58 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000004247 ENSRNOT00000064984 2 1 1 80 10 34978260 34978278 AGGTGTACTGCCATCTTCC 59 34978321 34978733 CACCCAAGTCCGTCTTAGAG 60 NA Rattus norvegicus 81 LOC100362149 ENSRNOG00000029627 ENSRNOT00000041813 2 1 1 60 3 22964575 22964595 ATCGTTTCCAGATGAGAATCC 58 22964616 22964635 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 1 2 2 83 12 13430076 13438069 TATCAAAGGGCCCACTGTC 59 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 1 2 2 80 11 83911082 83911213 CTGCAATTATCTTTGAGACTCC 57 83911023 83911043 TCAGGTATTTCTGAAGCAGTC 58 NA Rattus norvegicus 81 Slc52a2 ENSRNOG00000032561 ENSRNOT00000047380 3 1 1 90 7 117606902 117606920 ACCTACCTGATGACACTGG 58 117606974 117607097 GTACCCATGAAAGCACCAC 59 NA Rattus norvegicus 81 Ankrd13d ENSRNOG00000028247 ENSRNOT00000025641 3 1 1 81 1 219530137 219530155 CAGTCGACTCACTTCTCCT 59 219523841 219530095 CCAGATACCACATTTGTTCCTC 59 NA Rattus norvegicus 81 Qsox2 ENSRNOG00000018574 ENSRNOT00000061735 2 1 1 80 3 3677979 3677997 ATCGACTTCCTGCAGAACC 60 3677739 3677938 GATGTCACTGGACTGAATAGGA 59 NA Rattus norvegicus 81 RGD1561699 ENSRNOG00000047839 ENSRNOT00000068306 3 1 1 86 14 15424608 15425381 GAATCAAGTCCTAGGGTGC 58 15424540 15424559 AGGGAATCCAAGTCTTTCTG 57 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 1 2 2 80 8 115589170 115589650 TATCTTGCTGTCATTGAGAACC 59 115589690 115589709 CCTACCCACTTCATAAAGCC 58 NA Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 1 1 1 60 3 76790636 76790656 TGTATCCACTCTTCAGCACAG 60 76790678 76790696 CATTTGGTCCACAGAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 2 1 1 60 3 76790624 76790643 TGGGTAGGGTCTTGTATCCA 60 76790664 76790684 AGAACGGTAATCTTAAGGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572,ENSRNOT00000085310,ENSRNOT00000085479 3 3 3 80 10 5239743 5239972 CGAACTCAACTCAGAGACAG 58 5239682 5239702 TCATCCATTTCCATATCCTGC 58 NA Rattus norvegicus 81 Ddhd1 ENSRNOG00000009481 ENSRNOT00000032704 1 1 1 80 15 19981022 19985349 GGGATGAGCTAGTTAAAGGC 58 19980961 19980980 CTTCAAAGTCTGGATTCCGG 59 NA Rattus norvegicus 81 Bbs9 ENSRNOG00000015189 ENSRNOT00000020481 1 1 1 80 8 23782363 23786981 CGACTAGTTGTGGACTGGA 59 23787023 23787043 AGATGCTGACTGGTTTAAAGG 58 NA Rattus norvegicus 81 Iqcc ENSRNOG00000048553 ENSRNOT00000074345 2 1 1 80 5 147820342 147820454 TTAACAGTCGGAAGGAGTACC 59 147820282 147820303 TAGTAGGCTTGTCTCTGATCTG 59 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006,ENSRNOT00000061279 3 2 2 85 7 10997906 10997924 AAGAGGAGCATCCTAGCAG 59 10997137 10997857 CTCACTGTCATAAGGCCCT 59 NA Rattus norvegicus 81 Vom1r98 ENSRNOG00000052138 ENSRNOT00000086882 2 1 1 60 4 121913023 121913042 ACTTTCTCCAAAGGCAACTC 58 121913062 121913083 GCTCATAAACATTAGAAGGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Catsper2 ENSRNOG00000023064 ENSRNOT00000030019 3 1 1 80 3 113370366 113370861 CCATGTTGTCTCTGCTTCC 59 113370304 113370322 AGACCCTTAGCAGTTGGAG 59 NA Rattus norvegicus 81 Derl3 ENSRNOG00000028243 ENSRNOT00000038623 2 1 1 81 20 13705833 13705851 TGGAGGCTCATCACTACCT 60 13705651 13705788 AGTAGCGGAACACGAAGAG 60 NA Rattus norvegicus 81 AABR07051241.1 ENSRNOG00000046756 ENSRNOT00000074026 2 1 1 60 3 2513295 2513313 TGCCTGTCCCTTTACTGTC 59 2513341 2513360 GACAAGTAAGCAAGCAGACC 59 NA DesignNoJunction Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 2 1 1 80 3 3802860 3802878 ATGTACAAGGACCGGATCG 59 3801648 3802816 CCTTGAGGTCATAGCCTGG 60 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 3 2 2 84 5 157750887 157750905 GAGTGAGGGCAGCTATCTG 60 157749862 157750842 GATGGAGATAATGGTGTCAAGC 59 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430,ENSRNOT00000028570 2 2 2 87 1 101717013 101717319 AAAGGAGAAGTGCAGTTTGG 59 101716945 101716966 AGGTGATAAACAGGAAGTTCTC 58 NA Rattus norvegicus 81 Eml6 ENSRNOG00000037462 ENSRNOT00000056706 1 1 1 80 14 114179296 114180707 CAGCAAATACATTCAGGTGTC 58 114179236 114179254 GCTTCTGTTACCTGCTTCC 59 NA Rattus norvegicus 81 Upk1a ENSRNOG00000024331 ENSRNOT00000033621 1 1 1 80 1 89061338 89062520 TTTACCAAGGGTTGCTTCG 58 89061276 89061294 GATTGCAAAGCCAAACCAC 59 NA Rattus norvegicus 81 Zbtb24 ENSRNOG00000000308 ENSRNOT00000057175 3 1 1 83 20 46179084 46179103 TTTACCTGTGATCAGTGTGG 58 46179149 46179944 TAGTGAGTGGCCTGTATGG 59 NA Rattus norvegicus 81 Adad2 ENSRNOG00000015690 ENSRNOT00000021072 3 1 1 80 19 52261046 52261176 CAGCATAGAGACAATCCTGAC 58 52261222 52261241 GAATTCTCACTCAGGAGTCG 58 NA Rattus norvegicus 81 Ppbp ENSRNOG00000002829 ENSRNOT00000003794 2 1 1 80 14 18852710 18852731 AATCCCACTGAACTCTATCTCC 59 18852527 18852669 AGTGTGGCTATCACTTCCA 58 NA Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 2 1 1 128 16 20672608 20673165 GTCTAGACCAAGCTCACCG 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 Srsf2 ENSRNOG00000000248 ENSRNOT00000067739 1 1 1 91 10 105794950 105794968 AGAGTCCAAGTCTAGGTCG 58 105793832 105794895 TTGCCGATCCATCATTCTC 58 NA InUTR Rattus norvegicus 81 Kcng4 ENSRNOG00000015746 ENSRNOT00000021271 2 1 1 94 19 52280114 52280132 CCTCTCCGTTCTCTTCGTG 60 52273738 52280056 TAGCGCATTCTCCCTTGTC 60 NA Rattus norvegicus 81 RGD1566270 ENSRNOG00000048003 ENSRNOT00000048356 1 1 1 60 3 58009211 58009230 CATCAAGCACTCAAAGAGCA 59 58009170 58009190 TTTCTGATCGTTCTCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr516 ENSRNOG00000049954 ENSRNOT00000073426 1 1 1 60 3 74014131 74014151 CTATGCTTTCATCCTGTTGTC 57 74014091 74014110 GACTTTCCTTCTCCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 1 1 1 60 3 74544676 74544696 CTTCTTCTGTGACATACCTCC 58 74544636 74544660 CTCATTAATAGAAGTGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239,ENSRNOT00000079217 2 2 2 68 18 54118345 54121597 TCTCTGGACATCTGAAGGA 57 54121628 54121647 AGCCTGGAGTATACATGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Fancd2 ENSRNOG00000061085 ENSRNOT00000082618 1 1 1 80 4 145521255 145521958 CAAGCCAGAAATCAATGTCTC 58 145522000 145522018 CGTTATGTTGTCTTGCCAC 57 NA Rattus norvegicus 81 Galnt3 ENSRNOG00000005727 ENSRNOT00000007615 3 1 1 80 3 52177335 52177356 GAAGGCATGTGTCTATAAAGGT 58 52176402 52177295 TAGAGAAGTTGGTCCTTCCG 59 NA Rattus norvegicus 81 Rgs7 ENSRNOG00000021984 ENSRNOT00000065041 2 1 1 80 13 93116973 93116993 AGAGTTATGACAAGACCACAC 58 93115217 93116931 GCTTGTAAATGTGCTCCTG 57 NA Rattus norvegicus 81 Wdr4 ENSRNOG00000001181 ENSRNOT00000068289 3 1 1 95 20 10248062 10248080 TCTGGAGACGTCTACTCCT 59 10247393 10248003 ACTCACAGCCACATCTAGC 60 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 1 1 1 80 16 6107007 6107025 GCTGAAACTGAGAAGCACC 59 6107069 6107625 TCCTCGACATCGGTTTCTG 60 NA Rattus norvegicus 81 Mysm1 ENSRNOG00000026299 ENSRNOT00000039554 3 1 1 80 5 113919769 113919788 GATAAAGTCCGAGTGACCGA 59 113918439 113919726 CCTTGTTCTCATGGACTGC 59 NA Rattus norvegicus 81 Alkbh1 ENSRNOG00000012264 ENSRNOT00000016389 2 1 1 80 6 111459221 111461327 CTGTCCTTCAGCTTTGGAC 59 111459159 111459177 CATAAACATGGCTGTGGGA 58 NA Rattus norvegicus 81 Tubb6 ENSRNOG00000018371 ENSRNOT00000024947 1 1 1 114 18 63131113 63131131 AAGTGATCAGCGATGAGCA 60 63131205 63132710 ACGTACTTCTTAGAGGATGACTC 59 NA Rattus norvegicus 81 Cox16 ENSRNOG00000047115 ENSRNOT00000008954 1 1 1 80 6 105209964 105214127 GGAGTTCCCATGTTGTTGC 60 105209902 105209921 TGTCACAGCATCATATCGGA 59 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 2 2 2 80 8 117269290 117269676 CCTTCAAGACATTTCGTCCTG 59 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Ism2 ENSRNOG00000050312 ENSRNOT00000074480 3 1 1 81 6 111310570 111312220 GGATATGCTTGATTCAGATGTG 57 111310510 111310531 TTGGCTCAGATACTTAGTTAGG 57 NA Rattus norvegicus 81 Cnga4 ENSRNOG00000017609 ENSRNOT00000023751 2 1 1 80 1 170244337 170244358 CTGGTAAAGAAGTACATGAAGC 57 170244399 170245076 CTGAAGATGCTGGTACCAG 58 NA Rattus norvegicus 81 Zdhhc22 ENSRNOG00000011285 ENSRNOT00000015046 2 1 1 80 6 111013713 111015555 GGAGCTGGGAATGTAATCGA 60 111013652 111013673 AGGGAAATGCAAAGAAAGTAGG 59 NA InUTR Rattus norvegicus 81 Alx1 ENSRNOG00000004390 ENSRNOT00000006007 2 1 1 80 7 44767507 44767530 ATTACCCGGATGTATATGTCAGAG 60 44764695 44767469 TTTGAAACCAAACCTGGACC 59 NA Rattus norvegicus 81 Olr1624 ENSRNOG00000045711 ENSRNOT00000041733 3 1 1 60 15 26780922 26780940 TCACGGAATTCATCCTCCT 58 26780880 26780898 GTGAAGACCAGGAGTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp574 ENSRNOG00000055761 ENSRNOT00000079847 1 1 1 60 1 81955560 81955578 CTCTGCATTCATGTCCCTG 58 81955600 81955620 CGGTGATAAAGGAACTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngb ENSRNOG00000011719 ENSRNOT00000016057,ENSRNOT00000081727 1 2 3 89 6 111128697 111128715 GGACCTGTCTTCACTGGAG 59 111127274 111128643 CACCTACTGTCGAGAAGGAG 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494,ENSRNOT00000089524 2 2 2 80 3 97401052 97401070 TTCCTCTGTGTTTCAGGCT 59 97401113 97402873 TAAATCAGCCTTGGCAACAC 59 NA Rattus norvegicus 81 RGD1565059 ENSRNOG00000021324 ENSRNOT00000086472 3 1 1 84 2 154491172 154505261 TCATGGAAACAAGAGCCGT 60 154491106 154491124 TCTGTAGCCACACCTTACC 59 NA Rattus norvegicus 81 Cd320 ENSRNOG00000006901 ENSRNOT00000009067 2 1 1 82 7 18703754 18704969 GGAAGAGTGTAGAATTGAGCC 59 18705013 18705031 TGATGTTGTCACAGGAGCA 59 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 2 1 1 80 1 165278531 165278549 CTTCGAACAAGTGGGACAG 59 165278593 165280570 TAAGGCAGTGTCACTCTGG 59 NA Rattus norvegicus 81 Akr1b1-ps2 ENSRNOG00000023285 ENSRNOT00000018151 1 1 1 60 4 148952004 148952023 CTGCTGTTAACCAGATCGAG 59 148951963 148951983 CAGTACTCAATCAGCTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1396 ENSRNOG00000048331 ENSRNOT00000045600 1 1 1 60 10 34713723 34713744 ACCCTTTGATCTATACCCTGAG 59 34713765 34713783 CCTAGCACCTTCCACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311517 ENSRNOG00000020199 ENSRNOT00000027347 2 1 1 82 5 173556914 173558769 TGCCACAGTCTTCAGTGAG 60 173558815 173558833 GGAGAAGGCAGAAGGATCC 60 NA Rattus norvegicus 81 Olr598 ENSRNOG00000045832 ENSRNOT00000039963 2 1 1 60 3 76052682 76052701 AATGGTAGACGCTTTGACAC 59 76052724 76052742 ATTGGACCGACAGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910887 ENSRNOG00000050926 ENSRNOT00000072979 3 1 1 60 13 9480114 9480134 CTCAGCCATCATTCTGTTGAC 59 9480150 9480174 GAAGAAATACATAGGTGTTTGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679195 ENSRNOG00000029868 ENSRNOT00000045263 2 1 1 60 13 37697419 37697437 ATCAACAAGTCCACACCCT 59 37697377 37697397 CAGGCATGTTCCCATTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr108 ENSRNOG00000015909 ENSRNOT00000021296 1 1 1 60 1 168639808 168639829 TATTTACTACGGTCCTTTGCTG 58 168639849 168639868 AGAACTTCTGTGGCTGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859,ENSRNOT00000020705,ENSRNOT00000089142 2 3 3 86 9 90886981 90891871 CAAAGCGAAGAGATCCGAG 58 90891921 90891939 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Olr162 ENSRNOG00000047589 ENSRNOT00000075826 2 1 1 60 1 169683496 169683516 CCAGCCTATGTACCATTTCCT 60 169683536 169683556 AGTAGTTGCCAGACCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc1 ENSRNOG00000020539 ENSRNOT00000027850 3 1 1 80 2 188545328 188545349 TTAATTCTTCCCTGGAAGACCC 60 188545389 188545507 AAACCTGCAGAAACAATCCG 60 NA Rattus norvegicus 81 AABR07052768.2 ENSRNOG00000055669 ENSRNOT00000068048 2 1 1 60 3 74567488 74567508 TATTTCTTCCTCACCCATCTG 57 74567448 74567467 TAGGTGTGATGACAGTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd12 ENSRNOG00000039858 ENSRNOT00000061191 1 1 1 80 7 11219186 11219206 GGCTTATTGTGAACCTGTCTC 59 11219039 11219144 TGGCAATGAACTTCTTGGG 58 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000080822 2 1 3 71 20 3439751 3439769 CCTCGAGTGGTGAGTATCG 59 3439698 3439718 CTAGTTGTTCCCAAAGGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 3 4 5 81 9 43834354 43834373 AAGTATCCAGCCAGGAAAGG 60 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 AABR07030053.1 ENSRNOG00000048453 ENSRNOT00000071102 2 1 1 95 10 64930082 64930101 AGCAAGGACTAGAGCTTCTC 59 64930160 64930178 CCTTCCTTCTGGTCACCTG 60 NA DesignNoJunction Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292,ENSRNOT00000084238 3 2 3 80 2 154567243 154567264 AGACAGTGTAGACAAAGTAGCT 59 154567303 154569735 GATTCATTGGCTATACCTGCA 58 NA Rattus norvegicus 81 Tcof1 ENSRNOG00000026108 ENSRNOT00000045041 1 1 1 80 18 56115529 56115547 ATCATCTGTTGCAAGCAGG 59 56112688 56115489 GATGAGTCAGGAAATTCTTCTGG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 1 2 2 80 3 101908250 101910819 GAAACGAACCAGTTCTGCG 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 2 2 2 81 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277526 171278573 CTTCAGAACTTGCACCTGTG 60 NA Rattus norvegicus 81 Mfsd2b ENSRNOG00000023508 ENSRNOT00000032664 2 1 1 81 6 28959008 28959288 TAACCATACTGGTCTCGGC 59 28958945 28958964 AATGCAGATGTCCTCTTCCC 60 NA Rattus norvegicus 81 Irak2 ENSRNOG00000021817 ENSRNOT00000029819 1 1 1 80 4 145647548 145649916 CCTCAGGAAGCTACAGAGAC 59 145649954 145649977 ATACAGTAGGATGTTCTCCATCAG 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365,ENSRNOT00000080567 2 2 2 80 12 12646595 12646613 ACCGAATGGAAGAAAGCCT 59 12646654 12649874 GTTCTAGTCCACTCCAGATGAG 60 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000067781 2 1 2 115 15 2741196 2741970 AACCACAAGGGATGGACTC 59 2742049 2742067 CAGCAATCGCTGTAGTGAG 59 NA InUTR Rattus norvegicus 81 Rn60_4_1636.2 ENSRNOG00000055662 ENSRNOT00000084019 1 1 1 60 4 163559451 163559470 GACACCGCAATGTGATAGTC 59 163559491 163559511 AATTCTTGATGGGTTACCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 2 3 3 80 12 11604477 11604498 GAGATCTTCCAGACTACAGTCC 60 11603808 11604438 GAAGGAGTTGGCAACAATCTG 60 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 1 2 2 80 2 102726668 102726686 AATTGTTCAGGAGAGGCAG 57 102726141 102726624 AAGCCAAGATGATGTGCTC 58 NA Rattus norvegicus 81 RGD1560186 ENSRNOG00000031098 ENSRNOT00000049634 2 1 1 60 13 110372244 110372263 CCACCTTCAGAAGTTGACCT 60 110372285 110372304 ACACTTTCTCTTGCACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509,ENSRNOT00000078050 3 3 3 95 6 122763601 122764880 ATTTCACCTTGCAAAGCCT 58 122764938 122764957 TGCTTTAGTACACTTTGCGT 58 NA Rattus norvegicus 81 Grin2a ENSRNOG00000033942 ENSRNOT00000044626 3 1 1 80 10 6082910 6111286 CAGTTTGTTGGTGATGGTGAG 60 6111326 6111346 CACCTCATTCTTCTCGTTGTG 59 NA Rattus norvegicus 81 Cst8 ENSRNOG00000004989 ENSRNOT00000006667 3 1 1 81 3 143135780 143155906 ACTTCCCTGGAATGTGTCAG 60 143155950 143155968 TAGATGTAGCCAGCAAGGC 60 NA Rattus norvegicus 81 Olr562 ENSRNOG00000037834 ENSRNOT00000057479 2 1 1 60 3 75465840 75465859 TCTCAATTGGTGATTGGCTC 58 75465882 75465900 GTGATGTCTGCCCTATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015,ENSRNOT00000077340 2 2 2 87 1 53541007 53541025 CAAAGAGGCTTTGGCAGAC 60 53541075 53542759 TGGAAGACCAGATATCAGCC 59 NA Rattus norvegicus 81 LOC257650 ENSRNOG00000028430 ENSRNOT00000038939 2 1 1 85 10 86223350 86226915 TCCTTCCCTGCTAGATGTG 59 86226961 86226982 CTCCAAATCCAGAACATAAAGC 58 NA InUTR Rattus norvegicus 81 Olr556 ENSRNOG00000043492 ENSRNOT00000066249 3 1 1 60 3 75323167 75323185 TCCTTATGTTGGGAGGCAC 59 75323209 75323227 ACATAGCGATCATAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crebzf ENSRNOG00000018987 ENSRNOT00000025653 1 1 1 91 1 156294989 156295007 GGATAAGGTGTCGGTGGAG 60 156294705 156294723 GGCAGGAAGGAAATCACCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183,ENSRNOT00000059181 3 3 3 80 5 78504609 78504627 GAGTGTGAAGCTACAGGAG 57 78510572 78516415 AATAAGCACTCTGCCTTCTC 58 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000082668,ENSRNOT00000008256 2 2 2 80 10 86180023 86184294 ATTTCAAGAAGGACAAAGGTGC 60 86184334 86184353 AACCTGATTCTAGCAGTCCC 59 NA Rattus norvegicus 81 Olr493 ENSRNOG00000032730 ENSRNOT00000045888 3 1 1 60 3 74790166 74790186 CTTGTTCTTGTGTCCTACCTG 59 74790126 74790144 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4ebp2 ENSRNOG00000055391 ENSRNOT00000082448 2 1 1 68 20 31072126 31072144 CTCAGGACTACTGCACCAC 60 31058367 31072095 AAATGATTCGTGTTCCTCCC 58 NA DesignRelaxed Rattus norvegicus 81 Rprm ENSRNOG00000005109 ENSRNOT00000006784 1 1 1 60 3 39596306 39596324 TGCAGATCGCTGTAATGTG 58 39596264 39596282 CCAAGGAAGAAGATGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr420 ENSRNOG00000007965 ENSRNOT00000010473 3 1 1 60 3 21016793 21016814 TTTCTTCTGTGACCTCTATCCT 58 21016835 21016853 GGTGTTGAGTTCAATGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gk2 ENSRNOG00000029397 ENSRNOT00000044244 3 1 1 60 14 13751620 13751638 TATACAATGCCGTGGTGTG 58 13751657 13751680 TTATTGAGACTCTCCACAGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 3 2 2 135 16 21347352 21347370 TCATGGTAGCCGTCTACAC 59 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnat1 ENSRNOG00000017589 ENSRNOT00000023791 2 1 1 80 8 116436377 116436510 AAGCAGATGAAGATTATCCACC 58 116436318 116436337 AGTGTTGCCATAGATGATGG 58 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 1 2 3 120 20 40667642 40701728 CACAGATTTACTCTGTGATGAGG 59 40701808 40701826 CTCTGGATGTCGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135,ENSRNOT00000079732 2 2 2 80 5 145168814 145168833 CCCTCCAGGAACACTAACAG 60 145170001 145182619 CGGTTTGCTTCCATTTCCA 59 NA Rattus norvegicus 81 Mir216b ENSRNOG00000036371 ENSRNOT00000054490 2 1 1 62 14 113101117 113101138 GATGTCACTGAAGAAATCACAC 58 113101159 113101179 ATGCTTGATGTTGTCAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 3 3 7 80 9 43621063 43623578 GGCTATACAATCTGACAGCA 58 43623621 43623639 GCTTATAACTCTCCACGGC 58 NA Rattus norvegicus 81 Mbip ENSRNOG00000008610 ENSRNOT00000011419 3 1 1 80 6 77240171 77243487 ACAGGACAGCTTAACCTCAG 60 77240110 77240128 CTGGGATGTTGAGAGGCTC 60 NA Rattus norvegicus 81 PVR ENSRNOG00000019202 ENSRNOT00000064305 3 1 1 80 1 80828806 80831009 TTCCCTACCTTATCCACCC 58 80828744 80828763 GTCAGGTTCACGTTAGTGAG 58 NA Rattus norvegicus 81 Edn3 ENSRNOG00000007477 ENSRNOT00000009826 1 1 1 80 3 172857702 172857724 CACTTATAAGGACAAGGAGTGTG 59 172857764 172875987 TAGGGCACAGTCTGTTCAG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 2 1 1 60 15 23603586 23603604 CAGATGATGTACGCTGGGA 59 23601472 23603563 ATACCTTAGTTAGCTCGGCG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_2_2049.2 ENSRNOG00000053381 ENSRNOT00000087001 1 1 1 60 2 185447636 185447656 TTTAACATGACTGATCGGGAC 58 185447596 185447616 GCATATCGTGAAACTTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfl1 ENSRNOG00000020660 ENSRNOT00000015962 3 1 1 81 1 220872493 220872708 AAACTGACAGGAATCAAGCAC 59 220872751 220872769 CTAGTTTCTCTGCCAGGGT 59 NA Rattus norvegicus 81 LOC685184 ENSRNOG00000024700 ENSRNOT00000034341 2 1 1 80 3 54735967 54739309 TAAACGAGAACAAGATCACACC 59 54739347 54739368 CGTTGTGGATTAAGAATTCTGC 58 NA Rattus norvegicus 81 Or7e24 ENSRNOG00000046041 ENSRNOT00000072834 2 1 1 60 8 20398020 20398041 AATTACCTGCTTCAAGGATGTG 59 20397981 20398000 AAGAAGTTGTGAAGGGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr414 ENSRNOG00000033799 ENSRNOT00000052047 1 1 1 60 3 20882974 20882994 CCATCTCCTATACTGGTTGTC 57 20882934 20882953 TCCAGATCACCAAACATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enam ENSRNOG00000003672 ENSRNOT00000049462 3 1 1 81 14 21197992 21201153 TCAGCAATGAAGAAGGAAATCC 59 21197932 21197955 ATCTCTTCTGAGTAATAAGGACGG 60 NA Rattus norvegicus 81 Abhd17c ENSRNOG00000012683 ENSRNOT00000017362 3 1 1 86 1 146253429 146253447 CCTCTGATGTCTGGATTGC 58 146249906 146253381 AGATATCTTGTCAATGCTGGG 58 NA Rattus norvegicus 81 RGD1310717 ENSRNOG00000017039 ENSRNOT00000022992 3 1 1 81 1 169348302 169350260 CTGATGGCAGGTACTTTGAC 59 169348240 169348258 TTCCACTGCTCATAGTGCT 59 NA Rattus norvegicus 81 Cers4 ENSRNOG00000001072 ENSRNOT00000001418 3 1 1 80 12 4446767 4446785 GCACCTCTATCCTCTACCA 58 4445222 4445934 AATTCAGGGTCTGATGTGG 57 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 2 1 1 292 7 140452884 140453010 TCGGGCTCTAAGCAATGAG 60 140450794 140450812 AGAAGGAGAACGCACTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sytl2 ENSRNOG00000049878 ENSRNOT00000042163 3 1 1 80 1 156342187 156343646 CTGAAGAGGAAGACAGCAC 58 156342125 156342144 CTCCGGAACATATTGGAGAG 58 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000007158 3 1 2 200 10 47131706 47131724 ATTGTGGGCAGTAGAGTCC 59 47118013 47131542 CTGACAGGCTAACCCTCTC 59 NA InUTR Rattus norvegicus 81 Trap1 ENSRNOG00000005418 ENSRNOT00000008966 3 1 1 80 10 11742681 11743568 ATTAACACTTTGCAGGCCA 58 11743609 11743630 GATGTAACGGTAGAATTCCTCG 59 NA Rattus norvegicus 81 Rccd1 ENSRNOG00000042059 ENSRNOT00000029471 1 1 1 85 1 142111268 142111286 TTGGAATGAGTCAGGGCAG 60 142110956 142111221 CATTCAATTCTGTGGCTTCCT 59 NA Rattus norvegicus 81 Mrpl42 ENSRNOG00000042740 ENSRNOT00000066322 2 1 1 81 7 36583691 36588007 CACACCCAACCTATCCCTC 60 36583628 36583652 CTTCTAACTTGGTTCTCAGTATCTG 59 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 2 1 1 61 3 61591084 61591102 AGGTGTATTGTGCCAAGGA 59 61591126 61591979 CCCTGGAAAGGATGATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1304587 ENSRNOG00000002944 ENSRNOT00000004011 3 1 1 177 10 45559722 45559740 AGAACTACCTGGGCAACTC 59 45559880 45560045 ACGTTCTTGTAACCAAGTGC 59 NA Rattus norvegicus 81 Cldn12 ENSRNOG00000039862 ENSRNOT00000061199 3 1 1 139 4 25686409 25686428 CAGGCTGTTTGGAGAAACAC 60 25689207 25689225 GAAGAGGCCTGCTACAGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mre11a ENSRNOG00000009506 ENSRNOT00000012940 3 1 1 80 8 13329686 13330922 TGCAGAGAAGAATGTTCAGC 59 13330964 13330983 TCTTCCTTGTCCACAAACTC 58 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 2 1 2 62 3 55466596 55466614 CGTGGTCAGCTTGAATGTG 60 55466640 55466714 AAGGTGAATGCAAACAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Smpd3 ENSRNOG00000000257 ENSRNOT00000031977 1 1 1 89 19 38241069 38241087 ATCTGTTGAAGGGCAATGG 58 38240757 38241015 AATTCTTCCACCTCAGCCT 59 NA Rattus norvegicus 81 Adam23 ENSRNOG00000012424 ENSRNOT00000040525 1 1 1 80 9 70232882 70238892 TCACAAGACGTATAAGAAGCAC 59 70238930 70238951 GAATCTACAAGGTTGACCACAG 59 NA Rattus norvegicus 81 Cabs1 ENSRNOG00000001950 ENSRNOT00000002670 1 1 1 197 14 21747164 21747185 CAAAGAAGAACCAGATGAACTC 57 21746398 21746420 GCTAACCAACTGTCTAAGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam124b ENSRNOG00000058883 ENSRNOT00000072054 2 1 1 118 9 90788618 90805176 ATTCTACTGCAGGTCCAGC 60 90788518 90788536 GAGATGGAGCTCAACCTGG 60 NA Rattus norvegicus 81 Ppp2r5b ENSRNOG00000021025 ENSRNOT00000028542 1 1 1 80 1 221598534 221598733 CACTGGAATCAAACCATCGT 59 221598473 221598491 CTCATCAAACAGCTTCCCA 58 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 1 2 2 80 1 69817727 69817746 GTCTAGCATCACCTTTCCAG 58 69817789 69818578 ATTCCCTGAACAACACCCT 59 NA Rattus norvegicus 81 Rn60_12_0368.1 ENSRNOG00000046100 ENSRNOT00000074696 1 1 1 60 12 34868465 34868485 AACTCCCTTTCAAACATGGTC 59 34868425 34868443 TTGGTGTTGTTAGTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 3 1 1 98 3 176088302 176088323 CAAGTTCAGCCAGAATATTGGG 60 176088382 176089244 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 Abcf3 ENSRNOG00000001710 ENSRNOT00000002327 3 1 1 80 11 84036506 84036737 CAGTCCTCGACAGTAAATGC 59 84036445 84036463 CTTCTCTGAACGCTTCTCC 58 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 1 2 2 95 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779452 142779470 CATAGAGGGAGCCATGCTC 60 NA Rattus norvegicus 81 Pga5 ENSRNOG00000047279 ENSRNOT00000072343 2 1 1 80 1 226725873 226728206 TTCTACTTGAGCAGCAAGG 58 226725811 226725831 AAGCTCTCCATGGTAATAGGA 58 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 3 2 2 80 14 21996853 21997901 GTTCAGATGAGACATCCTATGAG 58 21995115 21995134 GCCATATTGGGAGAGTTGTG 59 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 1 2 2 80 16 20694972 20694990 TGATCATCCTGTGGCTGAG 59 20695034 20695170 GTTCTGCAGTTAGAGGCTG 58 NA Rattus norvegicus 81 Ssuh2 ENSRNOG00000005734 ENSRNOT00000007591 3 1 1 85 4 144309337 144309355 CAACAAGACATGTGCCACC 60 144308537 144309289 CAAACAGGCTGTTCTTCCAC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554,ENSRNOT00000024872 2 2 2 80 17 77613569 77615390 ATTGAGGAGTTAGAGGCACTG 60 77615430 77615450 CAGGAACTTGGTGATGATGTC 59 NA Rattus norvegicus 81 Olr601 ENSRNOG00000005863 ENSRNOT00000007679 2 1 1 60 3 76085112 76085130 TCATTCCCATGCTGAATCC 58 76085070 76085088 AGAGCCTCTTTCACATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam109b ENSRNOG00000042522 ENSRNOT00000066149 2 1 1 256 7 123574150 123574168 CTTTGCAGATCCAGAGGCT 60 123576334 123576352 CACACTCCTCTTGTTCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC682905 ENSRNOG00000004661 ENSRNOT00000006169 3 1 1 80 18 86279506 86279555 CGCCAGAGTTATCAGACCA 59 86279444 86279462 TCCTTGGTGGTGATCTTGG 59 NA Rattus norvegicus 81 Mafb ENSRNOG00000016037 ENSRNOT00000021452 2 1 1 60 3 156340638 156340656 CGACTGAACAGAAGACCCA 59 156340596 156340614 ATCTGCTGGTAGTTGCTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fshb ENSRNOG00000004898 ENSRNOT00000006512 2 1 1 82 3 98091322 98091340 TAGAGAAGGAAGAGTGCCG 59 98089740 98091276 ATACACCAGATCCCTGGTG 59 NA Rattus norvegicus 81 Ppp1r37 ENSRNOG00000017692 ENSRNOT00000023867 2 1 1 80 1 80444141 80444552 TGGATGAAGATGGTGCCTC 60 80444079 80444100 TGTTGAAAGAGATGTTGAGGTG 59 NA Rattus norvegicus 81 Olr664 ENSRNOG00000047937 ENSRNOT00000046926 3 1 1 60 3 77585234 77585253 TTGACTCAATCAACGACAGC 59 77585276 77585294 GCAAAGATCTGTGTCATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535,ENSRNOT00000050764 1 2 2 83 2 127723011 127723029 ATATGTCCATGTGCCAGCT 59 127721796 127722964 GCTACATTTCCTGCTCCGA 60 NA Rattus norvegicus 81 LOC103690255 ENSRNOG00000053006 ENSRNOT00000078723 1 1 1 60 4 72292749 72292770 CTTTCAATTACCCTTCTGTCGT 59 72292791 72292809 TACAGCCAGCATCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 2 2 2 80 19 55453586 55453606 GAAGAGTTTCATTCCAAGCTC 57 55449868 55453546 AAGATTAGCCTTCAGAAAGGG 58 NA Rattus norvegicus 81 Tkt ENSRNOG00000016064 ENSRNOT00000021862 1 1 1 80 16 6631101 6631781 GCCAATACAAAGGGCATCTG 60 6631823 6631842 CTGGAAATCCTCGTTGTTGC 60 NA Rattus norvegicus 81 Ptprq ENSRNOG00000056915 ENSRNOT00000081885 3 1 1 80 7 50014134 50014152 TACCGTGTGAAAGTGTCAG 57 50003495 50014093 GCTTATAGACTCATCTTGTCCT 57 NA Rattus norvegicus 81 Izumo1r ENSRNOG00000019894 ENSRNOT00000051471 3 1 1 92 8 13418191 13418764 TACTTTGAGTGCATGCCCT 59 13418117 13418137 GAAGTTAAAGAGCAAGGGCTC 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 3 2 2 101 20 45189915 45193524 TTTGTAAGCTCCATCGAGC 58 45189832 45189850 GTAGTGTCCCAGAATGACC 57 NA Rattus norvegicus 81 Etv3l ENSRNOG00000043511 ENSRNOT00000057490 3 1 1 93 2 186905557 186905575 GATCCAGATGAAGTGGCTC 58 186905631 186905858 TGTAGTAATACCTGAGGGCC 58 NA Rattus norvegicus 81 Vcp ENSRNOG00000034242 ENSRNOT00000046102 3 1 1 80 5 58439633 58441017 GGAGATGTCATCAGCATCC 58 58439571 58439589 CACTGTGTCATCAATGGGT 58 NA Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 3 2 2 80 X 114992189 114992209 TGTACAGGAATACAGATCGGC 60 114992248 114998952 TCACAATGCTTCTTAGCTTCTC 59 NA Rattus norvegicus 81 Rn60_18_0774.2 ENSRNOG00000053391 ENSRNOT00000091156 3 1 1 60 18 78283065 78283087 CGATACTGCTCTGTATTCTTCTC 59 78283106 78283125 GGAGACTTACTCAAGCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r124 ENSRNOG00000021430 ENSRNOT00000030813 1 1 1 60 4 166912235 166912254 CCAGAGAAGATAGAGACCCT 57 166912275 166912295 GAGACCATAATTCCTAAGGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam96b ENSRNOG00000011865 ENSRNOT00000015811 1 1 1 80 19 552060 552078 GCTCCATTAATGACCCGGA 60 552122 552381 GGTCGCTAACCTGAATTCG 59 NA Rattus norvegicus 81 Hephl1 ENSRNOG00000056092 ENSRNOT00000081616 2 1 1 80 8 13621887 13621908 AGAAGTACCTCAACAAAGATCC 58 13620612 13621847 CATTAATGGCGTGCATTCTG 58 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 3 2 2 102 3 3657616 3657634 GCAAGTGTCTCAAGTGCAG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC100910419 ENSRNOG00000038741 ENSRNOT00000059172 2 1 1 80 19 41540822 41540841 CGGGAGGAGAAGTATAAAGC 58 41540414 41540779 GAAATATGTCCCGCAGGAG 58 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 2 1 1 80 13 93691110 93692402 GGAAGATCAGATCGTGTCCA 59 93692443 93692463 GGAATTGCAGACTTCTTTCCC 60 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899,ENSRNOT00000018393 1 2 2 80 5 160397235 160397253 GACTGGTGGTTCATCAAGG 58 160395331 160397191 AGAATCTCCGTTACAGGCA 58 NA Rattus norvegicus 81 Stmn2 ENSRNOG00000011705 ENSRNOT00000015720 3 1 1 80 2 95443547 95443567 GTCTATGCTGTCACTGATCTG 58 95439718 95443505 ACCTCCATGTCATCGTAGG 59 NA Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 2 1 1 60 10 60542258 60542278 ATCATTCTCCTGGTTCAACTG 58 60542218 60542239 TGCTAAGAAACAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000089879 1 1 5 90 18 79352051 79372052 GGCCAGTAAGGATGGTGAG 60 79372106 79372124 ATCACTGTCTTCTGAGGCG 60 NA Rattus norvegicus 81 Zfp362 ENSRNOG00000043364 ENSRNOT00000007761 2 1 1 100 5 146969345 146973908 AAAGGACCCTCTAGGATGG 58 146969122 146969141 TTAATCAGGACCAGGTTGTC 57 NA Rattus norvegicus 81 Car5a ENSRNOG00000019098 ENSRNOT00000025848 3 1 1 82 19 54755047 54755065 GTCCTGCAGATACCTCTGG 59 54742584 54755001 CACCACTGATCCCTGACTC 60 NA Rattus norvegicus 81 Cog4 ENSRNOG00000017745 ENSRNOT00000023927 2 1 1 80 19 43377154 43381760 AATTGAACCAAGGGAGCTG 58 43377092 43377113 AGGAAGCGTAAGTACAATTCAC 59 NA Rattus norvegicus 81 AABR07017681.1 ENSRNOG00000049482 ENSRNOT00000073984 1 1 1 67 15 30019004 30019022 CTAGGCCTTCACCTGTCTG 60 30018818 30018836 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Nell1 ENSRNOG00000015675 ENSRNOT00000056030 1 1 1 80 1 105611630 105611648 CTTGCCCTCCTTTGAACTG 59 105611692 105630674 AGTTATGACCTGGGCAGAC 59 NA Rattus norvegicus 81 Uck1 ENSRNOG00000011467 ENSRNOT00000015792 3 1 1 80 3 11276058 11276223 TGACCCACTCAAGGTTACC 59 11275996 11276016 TGTAGAATACCAAGATGCCCT 59 NA Rattus norvegicus 81 RGD1564212 ENSRNOG00000042119 ENSRNOT00000060357 3 1 1 103 15 30462686 30462704 TTCACTAGTGGTCCTGTGG 59 30462950 30462968 GAGAAGTCTTGGCTCCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cd5l ENSRNOG00000023068 ENSRNOT00000057022 2 1 1 80 2 186692839 186692857 TTCAGGACTGCCCTTTCAG 60 186692900 186693506 CAAAGGGATCTTCGCATTCC 59 NA Rattus norvegicus 81 Olr559 ENSRNOG00000045869 ENSRNOT00000037577 1 1 1 60 3 75390284 75390305 TAGGATTCTGTACAGCATTTGG 58 75390325 75390344 TATAGCACAAGCCAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r35 ENSRNOG00000050881 ENSRNOT00000074735 3 1 1 102 12 21988367 21988385 GAGAAGTTGGCGATGTTGC 60 21988192 21988210 ACAGAGAATCTGGGTTGCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC679582 ENSRNOG00000042286 ENSRNOT00000068623 2 1 1 80 13 109675927 109675946 GCAGTATCCCAGAAGGATCC 60 109675988 109677088 ACAGGGTGATACTGCTTCAG 60 NA Rattus norvegicus 81 Shmt1 ENSRNOG00000005275 ENSRNOT00000007092 3 1 1 80 10 47036943 47037966 ATTCTACAGAAAGGGTGTGC 58 47036882 47036900 GAGTTGATGAGGGACTCCA 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700,ENSRNOT00000013605 1 2 2 80 3 119050622 119052060 CCTGAGAATACAAGATACCATTGAG 59 119052098 119052116 GGGTTAAAGCCCTCTTCCA 59 NA Rattus norvegicus 81 Enthd2 ENSRNOG00000028161 ENSRNOT00000038993 3 1 1 80 10 109277681 109278409 AGCTTTCTACATAGGCTCCC 59 109277620 109277639 CTCTTCAAACAGGTAGCCTG 58 NA Rattus norvegicus 81 Pdp2 ENSRNOG00000012343 ENSRNOT00000016462 2 1 1 89 19 599454 601399 GGACGAGGATACTAGGCTG 59 599383 599402 ATTGAAGATCCGGTAGGACG 59 NA InUTR Rattus norvegicus 81 Capn6 ENSRNOG00000004882 ENSRNOT00000006638 2 1 1 80 X 115054133 115054152 TGATGACCCTCTGATGAACC 59 115052729 115054094 GTGAAGATGTACTGAGGATTCTG 59 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048508 ENSRNOT00000072814 1 1 1 60 15 35942974 35942993 ATTGATCTCTGCCATTCCAC 58 35943016 35943034 TCTCTGCCACAAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igip ENSRNOG00000049067 ENSRNOT00000073131 3 1 1 60 18 29124480 29124501 CCATATTTGCTGTCATGTTCTC 58 29124522 29124540 GCTTGGTTTCCACATGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spry2 ENSRNOG00000010058 ENSRNOT00000013342 1 1 1 169 15 90174611 90175647 TGCTGTTGGAGGAGTTCAG 60 90174460 90174478 CTGGGTAAGGGCATCTCTG 60 NA InUTR Rattus norvegicus 81 Tlx3 ENSRNOG00000004976 ENSRNOT00000006676 3 1 1 126 10 18130543 18130561 AAATCGGAGGACCAAGTGG 60 18129513 18129531 CTGGATGGAGTCGTTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Pop7 ENSRNOG00000025310 ENSRNOT00000001913 2 1 1 91 12 22259897 22260115 GGGAAGAAGGACTTAGAGCA 59 22260169 22260187 GTTTCCGAAGGGTGTACTC 58 NA InUTR Rattus norvegicus 81 Rpa3 ENSRNOG00000008309 ENSRNOT00000011123 2 1 1 80 4 34280184 34281086 AATTGATGGAGCCACTGGA 59 34280122 34280141 ATAGTATGGTTGCCTTGGCT 59 NA Rattus norvegicus 81 Lrrc57 ENSRNOG00000009143 ENSRNOT00000049756 1 1 1 80 3 112384032 112384052 CAGATTCGGAGTATACCTGAC 58 112367785 112383993 GATCTGAGATATCTGGTTCTGG 58 NA Rattus norvegicus 81 Matn2 ENSRNOG00000006060 ENSRNOT00000008361 2 1 1 80 7 73205397 73205417 CTATGCAGAAGACTTCAGCAC 59 73205456 73206558 TCAGAGTCTTCTAGAGCTTCAC 59 NA Rattus norvegicus 81 Mslnl ENSRNOG00000039339 ENSRNOT00000060286 1 1 1 80 10 15115380 15115471 CAAACTTGCTCAGATCTACCC 59 15115512 15115531 AGGGAGTAGAGGTAGACCAG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120,ENSRNOT00000081282 1 2 2 80 1 91016021 91016039 ATGAGCTGATCAAGGTGGA 58 91016083 91018089 GCAAAGTCACTCCTGTCTC 58 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000089339,ENSRNOT00000087088,ENSRNOT00000022292,ENSRNOT00000066004,ENSRNOT00000079954 2 6 7 81 2 186232238 186232259 CACCGAAGCCATTAAACTAGAC 60 186164889 186232198 GTCTTGCAGACAAGTAACCTG 59 NA Rattus norvegicus 81 Plekhg6 ENSRNOG00000019528 ENSRNOT00000026441 3 1 1 80 4 157890993 157891373 GACACAAGGAGATGAATCGC 59 157890932 157890951 TCAGGTAGATCAGCTCAGTG 59 NA Rattus norvegicus 81 Efcab11 ENSRNOG00000053317 ENSRNOT00000082444 3 1 1 80 6 123894057 123894076 AACAAAGGCTACTTAAGCCG 59 123889190 123894014 CGCTTCTATCTTGGAGGGT 59 NA Rattus norvegicus 81 Olr697 ENSRNOG00000029675 ENSRNOT00000046271 3 1 1 60 3 78216249 78216269 CTGTTTGTCACATTCTTGCTC 58 78216209 78216228 CCATTATGAGCAGATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asphd1 ENSRNOG00000027213 ENSRNOT00000055016 3 1 1 89 1 198381380 198381398 TTTCCGTTCTACTGCCTGG 60 198379969 198381327 GAGGGATCTTCAGACCCAG 59 NA Rattus norvegicus 81 AABR07042599.1 ENSRNOG00000050134 ENSRNOT00000071393 1 1 1 80 19 212503 212525 CAACTTAGAGATGGAGAACACTG 59 212564 213216 AGCAGGTTTCTAGAGAAGGT 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855,ENSRNOT00000056483 2 2 3 80 8 111744889 111746494 AGAACACAGATGGAAAGAACC 58 111744829 111744847 TACCATCAAGGCAGAGGAG 59 NA Rattus norvegicus 81 Rnf148 ENSRNOG00000042462 ENSRNOT00000064228 3 1 1 63 4 50688226 50693855 GTCAGATGTCACAGTTAATGGA 58 50688184 50688202 AGACCTATGAGCTGAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Cyp2s1 ENSRNOG00000020743 ENSRNOT00000028177 2 1 1 80 1 82596475 82596645 CCCTACTCCTTAGGTAAGCG 59 82596414 82596435 CAAGATGGAAGTGAAGAAGAGC 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000036338 1 1 2 80 8 12161675 12241777 CACAGACAGGATCAACACTC 58 12241819 12241838 AGTGTTTGGATTTGAGCAGG 59 NA Rattus norvegicus 81 Fam92b ENSRNOG00000021714 ENSRNOT00000035651 1 1 1 80 19 53745392 53745410 CGGTGGAGGTATACTCCAG 59 53744233 53745348 TCTTGGCTCTGAAGTCCTG 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790,ENSRNOT00000084017 2 2 2 94 1 57351364 57358591 AATCTTAAAGGTTGCCAGGA 57 57358645 57358666 GGGTGTTACTACACTCTATCTC 57 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 3 1 1 60 3 21363370 21363390 TGACCCTCTTCCTGATATTCC 59 21363412 21363430 ATTCCCACATTTCCCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo24 ENSRNOG00000024922 ENSRNOT00000038397 2 1 1 80 12 22147394 22147999 ACCCTCTATATCACGGACCA 60 22148041 22148060 AAGGGTCCCAAAGAGATCAC 60 NA Rattus norvegicus 81 Olr715 ENSRNOG00000057668 ENSRNOT00000084255 3 1 1 60 3 78595339 78595358 CTCTTATTGGTGGTGTCCTG 58 78595298 78595318 CAGAGATCACTTGAAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col27a1 ENSRNOG00000007657 ENSRNOT00000010333 1 1 1 80 5 79165941 79167439 ATGGCGGATGGTATCTACTG 59 79167480 79167500 ATGTGTAAAGTTGCAGGAGAC 59 NA Rattus norvegicus 81 Kif4a ENSRNOG00000038035 ENSRNOT00000078233 1 1 1 80 X 70520310 70521704 GGAAGTAGACACTCAAGAGCA 60 70521746 70521764 TGACGGAGAGCATGTTGAG 60 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000087115 2 1 3 91 4 158637987 158703961 TCTGCCACGATCTTACAGG 59 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459,ENSRNOT00000040759,ENSRNOT00000047737,ENSRNOT00000051371 3 4 4 80 16 6245552 6245571 GCTTTGATGTCAAAGCCCTC 60 6241228 6245511 CAACTTGTAAACTGGGCACTC 60 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392 2 1 3 83 12 22473604 22473623 ATACGTGAGCCTGAACCTG 60 22473538 22473557 GAGAAACGATTCCAGAAGCG 59 NA Rattus norvegicus 81 Dnajb12 ENSRNOG00000030408 ENSRNOT00000044805 3 1 1 80 20 29460919 29460939 ACACAGACATGTACCACAGAG 60 29460978 29462011 TCTCCAGGGATTTCATAGTCTC 59 NA Rattus norvegicus 81 Slc25a45 ENSRNOG00000030616 ENSRNOT00000051979 1 1 1 80 1 221243361 221243383 CTACGTTGGGAATGTACTTTGTC 60 221243423 221243560 TGGCTGAACTGGGATTCTG 60 NA Rattus norvegicus 81 Vgll4 ENSRNOG00000007822 ENSRNOT00000010338 2 1 1 89 4 146839025 146839045 GCTGTTTATGAAGATGGACCT 58 146806750 146838975 GAAGCTTCACCTTCATAGCA 58 NA Rattus norvegicus 81 RGD1559726 ENSRNOG00000034073 ENSRNOT00000047841 1 1 1 60 18 84162524 84162543 GAGACAAAGGATCTGGAGGG 60 84162589 84162611 AATCTAGACCATTCTCTGAGGTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962,ENSRNOT00000070848,ENSRNOT00000067689,ENSRNOT00000073853,ENSRNOT00000060253,ENSRNOT00000060250 3 6 10 82 15 32855314 32855333 GAATCCTCCTGCTGAAAGTG 59 32855377 32855973 AGTCACGCTCTTTCAATCTC 58 NA InUTR Rattus norvegicus 81 LOC100910838 ENSRNOG00000024641 ENSRNOT00000029041 3 1 1 88 12 22033369 22033387 GATCCACCATGATCGAGGA 59 22033438 22034203 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Zbtb16 ENSRNOG00000029980 ENSRNOT00000045356 1 1 1 80 8 52988474 52993732 TCACATACAGGTGACCACC 59 52988412 52988430 CTTGTGGCTCTTGAGTGTG 59 NA Rattus norvegicus 81 Pcdhb15 ENSRNOG00000020054 ENSRNOT00000027164 3 1 1 60 18 30551623 30551641 TCAGTCACCTGAAGACACC 59 30551664 30551683 TAAGTCCCTAGCAGACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ice2 ENSRNOG00000010160 ENSRNOT00000013742 3 1 1 80 8 75660348 75661839 ATTATGTAGCTTGCAGGAAGG 58 75661879 75661899 TCTGAGGTCTTGTAGATCAGG 58 NA Rattus norvegicus 81 Morn4 ENSRNOG00000027156 ENSRNOT00000037490 3 1 1 84 1 261324587 261325175 GATGGGTCAAGGTATGAGG 57 261324521 261324542 CAAAGGTCATGTTGTCATATCG 58 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 1 1 1 80 7 10500316 10500335 TTGGATCCTTCCCAGAAGAG 59 10499964 10500278 CAATTTGTAGCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 Bcl6 ENSRNOG00000001843 ENSRNOT00000002522 1 1 1 80 11 80275659 80275677 TTCAGGCACCTTCAGACTC 59 80275718 80277875 CAGGTTACACTTCTCACAATGG 59 NA Rattus norvegicus 81 Sfxn5 ENSRNOG00000037871 ENSRNOT00000057537 3 1 1 80 4 116995322 117008828 CAGATGTCAGAGATTGAAACCTC 59 116995264 116995283 CTTGTTGTACACCACTGTCC 59 NA Rattus norvegicus 81 Olr665 ENSRNOG00000051939 ENSRNOT00000090062 2 1 1 60 3 77605594 77605612 GGCCTATGACCGTTATGTG 58 77605552 77605575 CCTGTTCATAATGGAAGAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 2 1 1 80 5 159465456 159467930 CAGTACTTTCAGCGCTGTC 59 159467971 159467992 GTCAATGATGTCCTTCTCAGTC 59 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000009491 2 1 2 140 6 44361546 44361564 GACAGAACCAAACGTCCAG 59 44360325 44361155 CCCAAATGCCATTTATTTAGCC 59 NA InUTR Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411,ENSRNOT00000088588 3 2 2 84 1 218098553 218099962 CTGGATGCTAGAGGTCTGC 60 218098487 218098505 AGACAAGAAACGGTCCAGG 60 NA Rattus norvegicus 81 Mylk2 ENSRNOG00000008235 ENSRNOT00000011255 3 1 1 80 3 148392356 148392457 TCATGGAGTACATTGAGGGC 60 148392500 148392518 CCATGGTATCCACTTCCGT 59 NA Rattus norvegicus 81 Slc39a3 ENSRNOG00000045524 ENSRNOT00000073221 1 1 1 73 7 11548373 11548391 TTTAATGCACTGCTGCCTG 59 11550197 11550215 TAGTCAGTGCTGATGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Syt9 ENSRNOG00000019613 ENSRNOT00000026607 1 1 1 80 1 171658502 171658520 CACTTCTTCGACTTGGCTG 59 171658562 171715880 GTCCACATTATCGTTGGTGAC 59 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 1 1 1 81 2 62029775 62029793 TTCTAGAGCACTGGCATCC 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Tmem198 ENSRNOG00000020061 ENSRNOT00000027208 2 1 1 80 9 82678949 82678967 TGACCCTGCTTATAGACGC 59 82679010 82679309 AAGCTCTGGATGTAACTCGG 60 NA Rattus norvegicus 81 RGD1565635 ENSRNOG00000016417 ENSRNOT00000021981 2 1 1 66 18 750863 750881 GATGTGATGCAGGAAACCT 58 751085 751105 CAAGGATACAGTCTTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910581 ENSRNOG00000024505 ENSRNOT00000035372 3 1 1 102 12 21727858 21727876 GAGAAGTTGGCGATGTTGC 60 21727683 21727701 ACAGAGAATCTGGGTTGCA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017599.1 ENSRNOG00000047018 ENSRNOT00000072403 1 1 1 84 15 29064790 29161835 AGCTACACTGGGTTAGCAG 59 29161883 29161901 TTGAAAGAGGCTTTGGCTC 58 NA Rattus norvegicus 81 Cpa3 ENSRNOG00000011181 ENSRNOT00000014970 1 1 1 80 2 105047784 105047803 GGTATTCCGTGTGAAACTCC 59 105044947 105047742 CAGAAGTCAAGCTCAATGGT 58 NA Rattus norvegicus 81 Pm20d1 ENSRNOG00000039745 ENSRNOT00000009838 1 1 1 80 13 48582190 48582457 ATTGTAAGCAGGGTAATGGAG 58 48582499 48582517 TGCATTGAACATGGTGAGG 59 NA Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 2 1 1 64 X 74171844 74171862 AGAGCTGGCAGTTAACCTG 60 74172983 74173001 CTCTGCGATTCTGAAACCA 58 NA DesignNoJunction Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 3 1 1 64 X 74171843 74171861 CAGAGCTGGCAGTTAACCT 60 74172982 74173000 TCTGCGATTCTGAAACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892,ENSRNOT00000082669 3 2 2 101 17 76399818 76401197 TTTCAGAGGAGTTGATCTCAG 57 76394927 76394946 TAAGCTTCACTGTTTCCCAG 58 NA Rattus norvegicus 81 Zfyve1 ENSRNOG00000008614 ENSRNOT00000011662 2 1 1 80 6 107077935 107077955 AAGAGGAGGAAGATGACAGAG 59 107056456 107077898 CTCTTCATTTGTTACCTGGATCTC 59 NA Rattus norvegicus 81 Cox7b ENSRNOG00000054689 ENSRNOT00000090007 2 1 1 81 X 77065513 77069155 CTAAGTCGTCTCCAAGTTCG 58 77069198 77069217 TGTCATGGAAAGTAGGTGTC 57 NA Rattus norvegicus 81 Rpusd4 ENSRNOG00000011567 ENSRNOT00000015670 3 1 1 105 8 36474697 36474715 ACATCAGCTCCGAGTTCAC 60 36474783 36476305 GCCAGCAGAAAGTTTCTGAG 60 NA Rattus norvegicus 81 LOC102551435 ENSRNOG00000029529 ENSRNOT00000002334 1 1 1 86 11 83979254 83985183 GTATCCTCGTGCTAGGCTG 60 83979186 83979205 AGTAATCCACACTGGTCACG 60 NA Rattus norvegicus 81 Gucd1 ENSRNOG00000049952 ENSRNOT00000072696 1 1 1 80 20 14101739 14101954 AGTGGAGAAATGCACAGTG 58 14101998 14102016 GAGTTCACCAAGACGATGG 58 NA Rattus norvegicus 81 Chtf18 ENSRNOG00000019174 ENSRNOT00000026139 2 1 1 80 10 15096303 15096891 TGCTCAGTGATGACTTTACCA 60 15096243 15096261 GCCTCTCATGACCAAACAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 3 3 3 80 4 183408873 183408892 GACTCTGTCTGGAAACAGGA 59 183406538 183408830 TGAGCATCAGAATTGTGGC 59 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988,ENSRNOT00000002492 3 2 2 95 11 81333957 81333977 GATATCCTGGTCACAATGGGA 59 81332018 81333900 TAGGACCAAGAACACCTGC 59 NA Rattus norvegicus 81 Tcea3 ENSRNOG00000011794 ENSRNOT00000015776 2 1 1 80 5 154630042 154633458 TTGTACCTATAACCAGGTGCA 59 154633499 154633518 CGATTCCCACATTCATTGCA 59 NA Rattus norvegicus 81 Cwc22 ENSRNOG00000012651 ENSRNOT00000037684 2 1 1 80 3 64750843 64750861 CAGGAAGCAGGAAGTAGTG 58 64749326 64750800 TGATTTCTGTCCTCCTTCCT 58 NA Rattus norvegicus 81 Ccdc132 ENSRNOG00000009894 ENSRNOT00000067087 3 1 1 80 4 28474667 28475823 TTGGAGCAAATTGAGGAACAG 59 28475862 28475883 AACCTTGGTGTAATGGTTAACG 59 NA Rattus norvegicus 81 Traf1 ENSRNOG00000048914 ENSRNOT00000072400 1 1 1 80 3 14017210 14017230 GGATCTGTCCTAAATGCAGAG 58 14009610 14017168 CAGGGAGAACCTTCTCCTG 59 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 2 1 1 100 12 13354973 13354991 CTCTTTGGAGGAGTGGGAG 59 13355054 13355499 TTGGGTATCCCAAGGAAACC 60 NA Rattus norvegicus 81 Amtn ENSRNOG00000003776 ENSRNOT00000065778 1 1 1 80 14 21294233 21295804 GACCTGCCATTGTTCAACC 60 21294171 21294189 TTGTCCATTCAGTGGTCCC 60 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947,ENSRNOT00000090393 1 2 2 84 5 118510129 118510149 GGAACTTATCAATTGAGCCCA 58 118500888 118510086 TTCTTGTTCCATTTGATGGTCC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000073636 1 1 8 163 3 100788154 100788172 TTTGATGAGACCGGGTTCC 60 100788299 100815572 CTCACCTGGTGGAACTCAG 60 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000077703 1 1 8 80 3 100770323 100815562 TAAGCCGCAAAGAAGTTCC 59 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 Tnfrsf11b ENSRNOG00000008336 ENSRNOT00000011344 3 1 1 80 7 93802167 93802186 TCCAGCTACTTAAGCTGTGG 60 93800430 93802125 CACAGAGGTCAATGTCTTGG 59 NA Rattus norvegicus 81 Ppil3 ENSRNOG00000013636 ENSRNOT00000018284 2 1 1 80 9 65326867 65326885 ACTGCATACAGATGTGGGA 58 65325169 65326825 AGAGCCAAGAAATTCTCACAG 58 NA Rattus norvegicus 81 Mif4gd ENSRNOG00000003837 ENSRNOT00000005198 2 1 1 80 10 104160869 104163118 TGCACTCAAAGATCCAGGT 59 104160807 104160825 AATACGCAGTCCTGCAGAG 60 NA Rattus norvegicus 81 Cyb5d2 ENSRNOG00000024553 ENSRNOT00000036942 1 1 1 80 10 59355140 59355159 CCTCCTCTGAGATATTGACG 57 59348572 59355097 TTCCAATCAGTCTTCCGAC 57 NA Rattus norvegicus 81 Zscan20 ENSRNOG00000005886 ENSRNOT00000008887 1 1 1 85 5 146768502 146768520 CAGTAGACAAGCCCAGGAG 60 146767297 146768453 TTGAAGCTGGAACTCCCAG 60 NA Rattus norvegicus 81 LOC100912283 ENSRNOG00000049757 ENSRNOT00000074839 3 1 1 81 10 70655930 70658457 ATAAACACGGCGTGAAGAC 59 70658502 70658520 GAATCGTCCTCCAGTTCCT 59 NA Rattus norvegicus 81 Cyp2d2 ENSRNOG00000008988 ENSRNOT00000012413 3 1 1 80 7 123654980 123655619 AGCTTATACAAGCTTCGAAGC 59 123654920 123654939 CCCGTTGATCACAACTACAG 59 NA Rattus norvegicus 81 Haus1 ENSRNOG00000046666 ENSRNOT00000073597 2 1 1 80 18 74191650 74191668 TCCAGAACATGGACTTCCT 58 74191240 74191606 TGGATGAAAGTTGCTCCTC 58 NA Rattus norvegicus 81 Rnf166 ENSRNOG00000013777 ENSRNOT00000018591 2 1 1 84 19 55294666 55294684 GAAAGTGGACAAAGCCACC 59 55293084 55294619 CAGTGTCACCTTCTTGTTGC 60 NA Rattus norvegicus 81 Ube2d1 ENSRNOG00000000611 ENSRNOT00000000750 2 1 1 80 20 18574806 18575958 ACCACCAAAGATTGCTTTCAC 60 18575995 18576018 CTCAGGATGTCAAGACAAATACTC 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 1 2 2 80 3 161416521 161416541 CATGTATCACTACCACGAGGA 59 161416582 161417390 TTAGAGCCACGACCATACAG 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 1 2 2 80 8 112626283 112626733 TCAAGAGAACACAGGAATACC 58 112626773 112626793 GGGAGATTAGGATCAATTCCC 58 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 2 2 2 80 8 112659205 112659970 CTCCCTCTGTATCCAGACAC 59 112660008 112660031 AAGGCCTTATTAACTCTACTCCAG 60 NA Rattus norvegicus 81 Hist1h2bl ENSRNOG00000059382 ENSRNOT00000072195 1 1 1 60 17 44738115 44738133 CGTGAACGACATCTTCGAG 59 44738073 44738091 CTTGTTGTAATGCGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr466 ENSRNOG00000060260 ENSRNOT00000077607 3 1 1 60 3 73274863 73274882 CCTTATGTGTTTGGCTTCCT 58 73274905 73274923 AAGACAGGTGGAAAGTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsf3 ENSRNOG00000015077 ENSRNOT00000020313 2 1 1 80 19 55630224 55630243 CTGGAGGCTATAAAGTCAGC 58 55630285 55630723 CAATTACAGCGACATCTGTG 57 NA Rattus norvegicus 81 Cxcl17 ENSRNOG00000037814 ENSRNOT00000057433 1 1 1 84 1 82269991 82270777 CTGCAAAGATTGGTCCCTG 59 82269925 82269943 ATGATCACAGGGACACTGC 60 NA Rattus norvegicus 81 Mettl3 ENSRNOG00000013111 ENSRNOT00000017720 1 1 1 80 15 28715027 28715045 CCTCAGATGTTGACCTGGA 59 28714103 28714983 CCTGACTGACCTTCTTGCT 59 NA Rattus norvegicus 81 Mettl3 ENSRNOG00000013111 ENSRNOT00000017720 3 1 1 80 15 28713985 28714003 ATGGGACCAAGGAAGAGTG 59 28713368 28713944 TGTTGATAATCCGTCTGAAGTG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098,ENSRNOT00000082974 2 2 2 83 10 85958386 85958405 AGTCTCAATCCAAACACCTC 58 85957918 85958343 GGATTATGTCAAACATTTCGGG 58 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098,ENSRNOT00000082974 3 2 2 84 10 85958386 85958406 AAGTCTCAATCCAAACACCTC 58 85957918 85958343 GGATTATGTCAAACATTTCGGG 58 NA Rattus norvegicus 81 Med22 ENSRNOG00000005059 ENSRNOT00000006720 2 1 1 81 3 4866569 4866588 ATAACAAGCGGCTCAAAGAC 59 4865355 4866525 TCATCCTCAATCTTGGCCG 60 NA Rattus norvegicus 81 Ubiad1 ENSRNOG00000009575 ENSRNOT00000012692 1 1 1 80 5 165258445 165258463 CTGAAACTGGAGCACTTGG 59 165249762 165258404 CTTGAATCCAATTCCTCCTGTG 59 NA Rattus norvegicus 81 Cox8b ENSRNOG00000014656 ENSRNOT00000019679 1 1 1 80 1 213648932 213650092 CACTTCTGCCATGGATCAG 58 213648870 213648888 TGGGATAAGACCCATCCTG 58 NA Rattus norvegicus 81 Rft1 ENSRNOG00000021805 ENSRNOT00000035542 1 1 1 80 16 6717241 6718982 GTAGTGAATGTCAGACTAACACTG 59 6719021 6719039 ACTCAGACAAGCTCTTCGG 59 NA Rattus norvegicus 81 AABR07060952.1 ENSRNOG00000061169 ENSRNOT00000058282 2 1 1 80 4 101639707 101640093 CTGGATCCAGGAAACTAGAGG 59 101640134 101640153 GAGACTGATTGTCCAATGGC 59 NA Rattus norvegicus 81 Arhgap8 ENSRNOG00000033570 ENSRNOT00000017420 3 1 1 80 7 125753359 125753380 AGGCATTGTATGTTGTACATCC 59 125747957 125753320 CAAACTTGTGACTGATGAGGG 59 NA Rattus norvegicus 81 Rcor3 ENSRNOG00000046445 ENSRNOT00000073588 2 1 1 80 13 110863879 110863899 GTTGGGATGAGAGTCGGAG 60 110856290 110856313 GTCTTTATCTGTGTACTTGGTAGC 59 NA Rattus norvegicus 81 Morc4 ENSRNOG00000060846 ENSRNOT00000089115 1 1 1 80 X 111144436 111144758 GAGATGACCTAGAAAGGGCTC 60 111144376 111144395 GAGGGAGGACAGAAGTAAGG 59 NA Rattus norvegicus 81 Ndp ENSRNOG00000046042 ENSRNOT00000074275 1 1 1 80 X 6273888 6281569 ATGTAGCTCAAAGATGGTGCT 60 6281611 6281629 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Polr2j ENSRNOG00000001430 ENSRNOT00000001941 3 1 1 86 12 23588301 23590062 GGAACATCATTAAATCGCAGCT 60 23588236 23588254 TGATCTTGTGCTCCAAGGG 60 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 1 2 2 80 2 195671127 195671148 GAGTGACTTTCTAAGTCTCCCA 59 195671189 195671829 TCTTCCCACTCTTCACCTG 59 NA Rattus norvegicus 81 Hist1h1a ENSRNOG00000017175 ENSRNOT00000023054 3 1 1 60 17 43614383 43614404 CTAAGAAACCCAAGAAGACTGC 59 43614344 43614362 TTCTTCGGTGTCTTGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a14 ENSRNOG00000005687 ENSRNOT00000007967 2 1 1 80 X 120631251 120633591 AGTATTGGGATAAAGTGACGCT 60 120633631 120633650 GGCAAAGTGCTAAGTACCAC 59 NA Rattus norvegicus 81 Csn1s2b ENSRNOG00000055083 ENSRNOT00000087672 3 1 1 83 14 21901551 21902860 ATCCAAGACTACGTGACCA 58 21901486 21901505 TTTCTGGTATTGCTGGAGAG 57 NA Rattus norvegicus 81 Cks1b ENSRNOG00000042561 ENSRNOT00000055533 2 1 1 80 2 188742565 188742584 CTGAATGGAGAAATCTCGGT 57 188741940 188742523 GTAAGATGTGAGGTTCTGGT 57 NA Rattus norvegicus 81 Oma1 ENSRNOG00000007214 ENSRNOT00000009516 3 1 1 80 5 122885938 122900022 GACTCATACCACAGGCTCTC 60 122900065 122900083 TGAACAGTAACCGAGGGTC 59 NA Rattus norvegicus 81 Gcc2 ENSRNOG00000000823 ENSRNOT00000001092 2 1 1 80 20 27848360 27848469 TAACAGGAAAGAGGCCCAG 59 27848511 27848531 TTCATAGAAGCAGATAAGCGG 58 NA Rattus norvegicus 81 Gen1 ENSRNOG00000004667 ENSRNOT00000006470 3 1 1 80 6 36923224 36923244 TACTCTGTTCCACAATCAGCA 60 36921995 36923186 TTCATGATCCTTAGGAGAACCTG 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 1 2 2 80 2 189400871 189400889 GGCGTCAAGTAGTAACTGG 58 189400931 189401324 AACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Akr1c12l1 ENSRNOG00000050243 ENSRNOT00000064884 1 1 1 80 17 69588163 69588183 CTGTGTCAAACTAAACGATGG 58 69588225 69589556 TTACTCTTGGGAACCTCGT 58 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309,ENSRNOT00000011592 1 2 2 80 X 1712251 1712273 CTTGTAGCACTTAAGGAGATCAG 59 1711606 1712211 CTTGAGCAGAGACACTTCC 58 NA Rattus norvegicus 81 Cldn11 ENSRNOG00000010263 ENSRNOT00000014359 1 1 1 83 2 115824798 115832774 TCCTTATTCTGCTGGCTCTC 59 115824734 115824752 AGCTCACGATGGTGATCTC 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 3 2 2 80 1 227498800 227503796 AGTTCTTGGGACTATCCAGC 59 227498739 227498758 TTGGAGTAGGAAGCTGACAC 60 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 3 3 3 80 4 147361935 147372232 TCTCACAATGCCATCAGGT 59 147372273 147372294 GTCGATATCACTGGAGATCTCC 60 NA Rattus norvegicus 81 Plxna2 ENSRNOG00000007324 ENSRNOT00000009900 1 1 1 80 13 113403045 113466664 GGCAAGCTAAAGAAGATTCGAG 60 113466703 113466723 CCCATCTTTGAACACAGAGAC 59 NA Rattus norvegicus 81 LOC100912370 ENSRNOG00000049711 ENSRNOT00000071385 2 1 1 60 3 77825679 77825700 CGTGGTTACGTTTATGAATGCT 60 77825640 77825661 CCTGAAAGTGTAAACCATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina3m ENSRNOG00000009921 ENSRNOT00000013175 2 1 1 80 6 127811656 127813433 CTTTAGAGGCAAATGGAAGGT 58 127811596 127811615 ACAGACCTCTTCTCATCCAC 59 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 2 2 2 96 13 80465786 80465807 TGATTCAGATGAAGAAGAGGAC 58 80468767 80472967 CACCTGATTCTGAACATGCT 58 NA Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 2 1 1 80 4 150138744 150138764 TTTGGAAGCCTATGACAACTG 59 150138805 150139253 TGTTTCTTCTTTACCACCCG 58 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 3 2 3 81 20 3316005 3316188 AATCGCATCAATAAGGCCG 59 3316231 3316251 CTTTCCCTTTCGATTTCTCCT 58 NA Rattus norvegicus 81 LOC100909524 ENSRNOG00000048988 ENSRNOT00000075378 3 1 1 80 6 129008218 129009551 CTTGTTCAAAGGCAAGTGG 57 129008156 129008174 GCCTTGTATTTGTCCAGGT 58 NA Rattus norvegicus 81 AABR07068851.1 ENSRNOG00000059237 ENSRNOT00000089735 1 1 1 80 9 121946682 121951244 AATTCAACAAAGGCAGTTCC 57 121946621 121946639 AATGCTGCTTGAGTCTACC 58 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844,ENSRNOT00000079539 2 2 2 80 19 43839961 43840297 CCGCCATTATAGGAAGAGTG 58 43839900 43839918 GTAATGATGCCCAGAGTCC 58 NA Rattus norvegicus 81 Olr436 ENSRNOG00000032273 ENSRNOT00000040012 3 1 1 60 3 72739971 72739991 TTCTTCTGTGATGAACCTCCC 60 72739931 72739953 GGATACTGAAGTCAATACTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 1 1 1 88 X 14635107 14635452 TACAACATCTGATGGCACC 58 14635037 14635056 ATAGGACAATTGCTACTGCA 57 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 1 2 2 60 8 21479630 21480224 CAAACGCAGACAGGAAGTG 60 21479588 21479607 AGTCTCCATATTGTGTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911127 ENSRNOG00000055735 ENSRNOT00000091636 2 1 1 60 15 36157399 36157419 ATTCACGTACTTACATCCCTC 57 36157359 36157380 CACAGATGACAATTTCACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmu ENSRNOG00000002164 ENSRNOT00000002941 1 1 1 80 14 34375577 34378287 CAAAGTGAATGAATACCAGGGTC 60 34379859 34379877 GTTGACCTCTTCCCATTGC 59 NA Rattus norvegicus 81 Actl10 ENSRNOG00000036864 ENSRNOT00000055335 1 1 1 60 3 150056237 150056255 ATCGTGCCCAGATCTTCAG 60 150056278 150056297 CTTCTTGAGCTGTGTAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040947.1 ENSRNOG00000011100 ENSRNOT00000014756 3 1 1 96 X 115425507 115425574 AGAGATGGCTAGTGTCGTG 59 115425429 115425447 CATGACTGACACCAAAGCC 59 NA Rattus norvegicus 81 Olr1598 ENSRNOG00000046866 ENSRNOT00000048222 1 1 1 60 13 92358409 92358427 ATCATGGGTTTGACTTGGG 58 92358447 92358469 CACTGAGGAAGAAATACATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cited4 ENSRNOG00000046607 ENSRNOT00000072427 2 1 1 92 5 139598089 139598107 ATACGGCTCTTTCGGATCG 60 139598163 139598181 GTAGCTGCAGACTGAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fubp3 ENSRNOG00000009139 ENSRNOT00000021871 1 1 1 80 3 10245510 10254007 CCTTGGACGATGGAGTAGG 59 10243168 10243188 CAGGCACCTTGAATTCTTCTG 60 NA Rattus norvegicus 81 Cdh3 ENSRNOG00000020129 ENSRNOT00000027273 1 1 1 80 19 38705880 38705899 TCTTAGATCGTGAGGACGAG 59 38705941 38706879 GAGGGTTTCCATTGTCTGTG 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473,ENSRNOT00000012397 1 2 2 80 4 152214465 152214486 GAGAAGGAGACACATCTAACCA 59 152149593 152214426 AGCTTCTTGTTTCATCTCCAG 58 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000071735 1 1 2 81 6 129423254 129423272 CACTGTTCTTGGAAGCGAC 59 129423315 129425978 TGAACATTTCAATGCCCAGAG 59 NA Rattus norvegicus 81 Diras2 ENSRNOG00000032328 ENSRNOT00000044842 1 1 1 60 17 12763025 12763044 CCTTCATCCTGGTCTACTCC 59 12763067 12763085 TAGATGGGCTTGAGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684683 ENSRNOG00000033994 ENSRNOT00000042537 2 1 1 60 3 73335985 73336003 CTTTGTGAGTCCACTGCTG 59 73336024 73336045 CTGCTTTACGTCTTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 2 1 1 81 13 49075642 49078741 GTCACAGCCAAAGATTATCGAG 60 49078777 49078801 CATAGTGTTGTAAGTAGTTGTGAGG 60 NA Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 3 1 1 82 13 49075589 49075607 AGGGCAAGTGGAAGAAGAG 59 49075649 49078749 GGCATACACTCGATAATCTTTGG 60 NA Rattus norvegicus 81 LOC102552732 ENSRNOG00000023397 ENSRNOT00000031916 2 1 1 80 14 22869123 22870855 GAAGCTGTAGAGGGCTCTG 60 22869061 22869081 GGTTCTTTGAGGAAACTTGGG 60 NA Rattus norvegicus 81 Phf10 ENSRNOG00000061312 ENSRNOT00000085273 3 1 1 81 1 56961649 56962523 GCACACTAGGTTTAACAGCA 59 56961587 56961606 TATTCAGCGTGTTTAGCTGG 58 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 2 1 1 177 12 23755362 23756928 TGAATTCTTGCATACACAGCC 59 23757599 23757617 GTCATCGTCGCATACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 3 1 1 178 12 23755363 23756928 GAATTCTTGCATACACAGCC 58 23757601 23757619 CAGTCATCGTCGCATACAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbbp5 ENSRNOG00000021289 ENSRNOT00000036110 2 1 1 80 13 49267965 49268523 TTCTGTAGCAGTGATGAAGAG 58 49268564 49268583 TTCAGGGTCTTCTACCTCAG 58 NA Rattus norvegicus 81 Ccl26 ENSRNOG00000001444 ENSRNOT00000001963 2 1 1 80 12 24159092 24161618 ATGAGGGCGTCATATTCAC 57 24161661 24161680 AAATGTATCTCTGCACCCAC 58 NA Rattus norvegicus 81 Mir181b1 ENSRNOG00000035590 ENSRNOT00000053713 3 1 1 60 13 54952939 54952957 ACATTCATTGCTGTCGGTG 59 54952978 54952999 GTTGCATTCATTGTTCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043,ENSRNOT00000086432 2 2 2 80 6 52148403 52148421 TCGAGAAGTACAGAGGCAC 59 52148459 52149854 TATATCTAAGACCTTCAGGACAGTG 59 NA Rattus norvegicus 81 Tlr6 ENSRNOG00000002161 ENSRNOT00000002933 3 1 1 86 14 45039975 45039995 ACAACATTCCCAGTAGATACC 57 45040040 45042083 AGTTCTTTCCCTTCTCAATAGG 58 NA Rattus norvegicus 81 AC125991.2 ENSRNOG00000052402 ENSRNOT00000092205 2 1 1 60 3 78982803 78982825 CTCCTCAATCCTCTCATCTACTC 59 78982765 78982786 GATTCTTCATGGCTTTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf114 ENSRNOG00000060821 ENSRNOT00000086459 3 1 1 80 3 164256674 164256695 CTTTGATCAGGAAGGACTTGTG 59 164256735 164258195 GCACATATGGGACAAACCAC 60 NA Rattus norvegicus 81 AABR07015081.2 ENSRNOG00000054945 ENSRNOT00000087247 2 1 1 82 14 46657955 46657973 GGATCCCTACAACTCGGTG 60 46654990 46657909 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 Baz1b ENSRNOG00000001453 ENSRNOT00000001975 1 1 1 80 12 24524609 24524627 AGCTTGTAGATTCCGCCTG 60 24518543 24524568 TCTCCTTTCCTACCTCAAAGTC 59 NA Rattus norvegicus 81 Car13 ENSRNOG00000021323 ENSRNOT00000038546 1 1 1 80 2 88290574 88290592 GGTTCCACCTCTTCTTGAG 58 88284208 88290530 AATCTGGCCAACTGTTGAG 58 NA Rattus norvegicus 81 Slc35f1 ENSRNOG00000000412 ENSRNOT00000000468 1 1 1 80 20 34393721 34401196 GGATTGGCAAATAGGGCTG 59 34401237 34401258 TTTATGACGACTGGCATAAAGC 60 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 2 2 2 80 4 85125048 85127604 ACAGAGATTTGCCTCAATGGA 60 85124988 85125008 GAAACAGATGATCCGCTTCTC 59 NA Rattus norvegicus 81 Cndp1 ENSRNOG00000027739 ENSRNOT00000034970 1 1 1 80 18 81467849 81468955 GAATGAGAAGATCAACAGGTGG 59 81467790 81467809 TGAAGCTTTGACAACTCCAG 59 NA Rattus norvegicus 81 Wbscr28 ENSRNOG00000001474 ENSRNOT00000033499 2 1 1 81 12 24807197 24807215 CTGGTACTGCTGCTAACCT 59 24807260 24807994 GCATAGAACTCTGGCTGTG 58 NA Rattus norvegicus 81 Pip4k2a ENSRNOG00000016670 ENSRNOT00000022375 3 1 1 93 17 85538651 85543760 AGGATGTCGAGTTCCTTGC 60 85538576 85538594 TCAACCTCCTCTTGCTCTG 59 NA Rattus norvegicus 81 Tmem175 ENSRNOG00000000044 ENSRNOT00000000050 1 1 1 80 14 2092041 2092061 ATGCCTTACTATCCATCATCG 58 2091025 2091830 TGTCAAACTGCTGTTCTGG 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078316 2 1 9 60 9 81545333 81545353 GTAACTGCTCTTTCAGTGGAC 59 81545374 81545393 GGTCAGAAGAAAGCATCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc12 ENSRNOG00000013162 ENSRNOT00000017567 3 1 1 150 X 122809547 122809980 TCCTAGCTGGTACCCTACTG 60 122810093 122810111 TTACCCATGCGTGAAAGGA 59 NA InUTR Rattus norvegicus 81 Tbx2 ENSRNOG00000003517 ENSRNOT00000004698 2 1 1 127 10 73280362 73280380 AAACGCATGTACATCCACC 59 73280471 73284656 GAGTTCAGGATGGTGAAGC 58 NA Rattus norvegicus 81 LOC678816 ENSRNOG00000033808 ENSRNOT00000043108 1 1 1 60 18 69818817 69818835 TAAAGTTCAAGGTCCGCTG 58 69818857 69818877 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC678816 ENSRNOG00000033808 ENSRNOT00000043108 3 1 1 60 18 69818816 69818835 GTAAAGTTCAAGGTCCGCTG 59 69818856 69818876 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000056393 3 1 2 85 4 148048212 148048235 CAGCTCTTCTGTGATAGAAATAGC 60 148045490 148048170 TACATAGTGAGACCCGTTCTG 59 NA Rattus norvegicus 81 Psmd5 ENSRNOG00000018809 ENSRNOT00000025433 2 1 1 80 3 13928671 13928691 CTGAGTAATGCTGAACTCCTG 59 13928329 13928629 TTTGATAGCCGCTTTAGCC 58 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125,ENSRNOT00000090170 2 2 2 80 13 49901997 49902017 TCAAGTATGTGTATGATGCCC 58 49902058 49903413 TGGACTCAATCAACCTTGTG 58 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495,ENSRNOT00000080604 3 2 2 98 14 72017926 72017944 AGGGATGGTAGAGATGGCA 60 72012500 72012518 TCCTTTCTCACCAGCAAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100360645 ENSRNOG00000042271 ENSRNOT00000066885 3 1 1 80 10 48881063 48881081 GCAGATTCTCGTGAAGACC 58 48881125 48881144 GCCTCACTCACTTTCATGG 59 NA Rattus norvegicus 81 LOC500948 ENSRNOG00000031660 ENSRNOT00000041021 3 1 1 81 8 16347342 16347362 GGAGCCAGATATGGATGTCTC 60 16343532 16347304 GTGTATTAGGTACAGCAATCATCC 60 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350,ENSRNOT00000072663 1 2 2 80 3 148426052 148427535 TGGAAACTTCATTGATGCCA 58 148425991 148426010 GGTGATTCGTGGATAGAGAC 58 NA Rattus norvegicus 81 Gstt1 ENSRNOG00000049771 ENSRNOT00000001669 2 1 1 80 20 13806055 13813875 TGGCATAAGGTGATGTTCC 58 13813919 13813937 ATCCAGATCTGCCAATGTG 58 NA Rattus norvegicus 81 Olr1230 ENSRNOG00000049352 ENSRNOT00000072547 2 1 1 60 4 1418103 1418122 GATTTCCTGCAGTAACACCT 58 1418144 1418163 AATAGTTCCAACCACAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabepk ENSRNOG00000018591 ENSRNOT00000025194 3 1 1 95 3 13852339 13855909 AAGTCATGAATCCCGAAGC 58 13852262 13852281 CAATAGCTGCTGATGATGTG 57 NA Rattus norvegicus 81 Gpr119 ENSRNOG00000024517 ENSRNOT00000033619 2 1 1 80 X 135516850 135519497 AGAAGGTAGGAAGAAAGACGC 60 135516790 135516808 CACATGTGTACAGCGTCTG 59 NA Rattus norvegicus 81 Pabpn1l ENSRNOG00000029558 ENSRNOT00000045052 2 1 1 80 19 55434030 55434050 AATGAAGATTCCAGCTTCCTG 58 55433650 55433990 CTCTAGCTCCTGGTTGTAGAC 59 NA Rattus norvegicus 81 Sept1 ENSRNOG00000017804 ENSRNOT00000055012 1 1 1 80 1 198660219 198660775 GTCCTCAAGCAGAAGATCC 58 198660157 198660177 TTCATCAGAGTCACATTCTGG 58 NA Rattus norvegicus 81 Katnbl1 ENSRNOG00000005814 ENSRNOT00000007688 3 1 1 80 3 103902965 103902985 GAATGGATTATGGGAACAGGA 58 103903026 103905864 TAAGCATCTACGTCCTTAGC 57 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 1 2 3 80 19 10190008 10190845 CTACGTTTACAGGGTTATCAGG 58 10190886 10190904 GACGCCCAGTAGTAAAGAC 58 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000049182 ENSRNOT00000072418 1 1 1 90 15 30802336 30802448 TTCTTCTGAGAGTTGCCCA 59 30802502 30802520 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 AABR07052798.1 ENSRNOG00000046348 ENSRNOT00000071912 3 1 1 60 3 75769011 75769031 TGCATCTTTACCGATGTTGAG 59 75769052 75769071 CCTTGTACCGATCAAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msrb2 ENSRNOG00000016873 ENSRNOT00000022661 3 1 1 87 17 86078693 86146026 CCCACTCTTCAGTTCTGAG 57 86146077 86146095 TTCATCTGAGCCTTTGGTG 58 NA Rattus norvegicus 81 Gpr37 ENSRNOG00000002524 ENSRNOT00000003593 2 1 1 80 4 51842547 51842567 TCATCTTCCATGAGTTGACCA 59 51823500 51842508 GAGAAGCTACCTCGATATAGGG 59 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879,ENSRNOT00000083100 1 2 2 80 14 36750880 36751280 TGTGGAAGTGGTCCTAACC 59 36751321 36751342 GATGTCGTCATCAAACAATAGC 58 NA Rattus norvegicus 81 Rgcc ENSRNOG00000042960 ENSRNOT00000068216 1 1 1 80 15 61555256 61555276 ATGAGAAGCTGAATTCTCCGA 59 61553555 61555215 CACCTAATTTGGCTTTCCGA 59 NA Rattus norvegicus 81 Cldn8 ENSRNOG00000001571 ENSRNOT00000002138 1 1 1 60 11 28527380 28527398 CCCTCTACATAGGCTGGAC 59 28527338 28527356 CAACAGAACAGTGCTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn8 ENSRNOG00000001571 ENSRNOT00000002138 2 1 1 60 11 28527728 28527748 GGAAGGTTTGTGGATGAACTG 60 28527688 28527709 ATAGACCTTACACTGCATTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zhx2 ENSRNOG00000005417 ENSRNOT00000007326 1 1 1 80 7 97632095 97693037 GCAGACACTGATATGAAGCC 59 97693077 97693098 TGTTTCAGAAGGATTTCAGCAC 60 NA InUTR Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 1 2 2 97 7 129860683 129862039 CACTGACTTTGATGGCACC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844,ENSRNOT00000002837 2 2 2 80 14 33143412 33143431 TGTGAACTGTGTCCTTACTC 57 33137671 33143369 AAATGGCTTCTCACCTGAG 57 NA Rattus norvegicus 81 LOC688321 ENSRNOG00000045751 ENSRNOT00000071293 1 1 1 80 10 109952004 109952027 GTCTACAAAGGAGATCTTTGACAG 59 109952148 109952258 CCCTTGGCTACTATCTGGG 59 NA Rattus norvegicus 81 Myeov2 ENSRNOG00000037402 ENSRNOT00000056600 1 1 1 60 9 99816010 99818199 GTAGACTTGGATGAGGCTG 57 99815968 99815986 TTTCATTGGCTGCCAAGTC 59 NA DesignRelaxed Rattus norvegicus 81 Npap60 ENSRNOG00000024560 ENSRNOT00000039549 1 1 1 115 4 128264557 128264814 TAGTGCAGGACACTAAGTTAGAC 60 128264464 128264482 TGGTGGATTGGGTACACAG 59 NA Rattus norvegicus 81 Ranbp6 ENSRNOG00000053859 ENSRNOT00000078998 2 1 1 60 1 247985330 247985351 GACTACATTCCTCTTAGATGCC 58 247985291 247985313 CATTTGTCTCACCTCATAACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ormdl3 ENSRNOG00000030445 ENSRNOT00000049621 1 1 1 80 10 86547467 86547790 CCCATTGTGCTGTACTTCC 59 86547405 86547425 CATCAAGGACACAGTGTTGAG 59 NA Rattus norvegicus 81 Tpd52l3 ENSRNOG00000042441 ENSRNOT00000066891 2 1 1 60 1 248195966 248195984 CAGATGCCATGACAGAGAC 58 248196007 248196026 TCTGGTTCTGAAGCTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drg1 ENSRNOG00000018590 ENSRNOT00000025241 2 1 1 87 14 83468924 83468942 TCGTTTGAACAGCAAACCC 59 83464681 83468874 TTCACTCTGAGGACAAGTGG 59 NA Rattus norvegicus 81 Steap1 ENSRNOG00000000017 ENSRNOT00000000018 3 1 1 82 4 25443072 25446056 CTATATTCAGAGCAAACTGGGA 58 25446098 25446117 CTACCCATTTATTCCAGGCA 57 NA Rattus norvegicus 81 Olr1581 ENSRNOG00000046418 ENSRNOT00000045565 1 1 1 60 13 91693451 91693471 TCTTCTCTGCCCTATACATCC 59 91693411 91693433 CGGATAATGGTCACAATGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsnaxip1 ENSRNOG00000018954 ENSRNOT00000025686 2 1 1 80 19 37810946 37811090 ATGGGAAAGACTTTGGAGAG 57 37811132 37811151 GTCAGCATTTATCAGCTCCT 58 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032,ENSRNOT00000003638 3 2 2 80 18 312820 312839 GATGGAAATAAACTGGCGCA 59 309773 312778 GATGACGTCCTTCACAATGG 59 NA Rattus norvegicus 81 Olr47 ENSRNOG00000018501 ENSRNOT00000024948 3 1 1 60 1 167769724 167769743 CTACATTGGACCTCTTCCAC 58 167769683 167769701 GATGTGGGTCCGATAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcc1 ENSRNOG00000048309 ENSRNOT00000072679 3 1 1 80 3 151454848 151456024 CACAAGTAAGCTGTCCACTG 59 151454787 151454808 GCTTCGATTATCTTCGTGAAGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431,ENSRNOT00000026252 1 2 4 82 1 81124237 81124916 AAGGTTCAGGAATGAACAACC 59 81124175 81124193 GATTTGCCAGCAGGAAAGG 60 NA Rattus norvegicus 81 Hs3st2 ENSRNOG00000017659 ENSRNOT00000023773 2 1 1 103 1 191345808 191345826 TGGAGTTTATCCGAGTGCA 59 191345893 191472796 CATCAGGCTCCTGTACCAG 60 NA Rattus norvegicus 81 Ankrd29 ENSRNOG00000046744 ENSRNOT00000073811 3 1 1 60 18 3676135 3676156 GAATGAACATATACTGCACCTC 57 3676096 3676114 TCCGAGTTCATTCTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs2 ENSRNOG00000010529 ENSRNOT00000014552 2 1 1 80 1 56658701 56658719 AAACATTGGCTGGAAGGAC 58 56657230 56658660 ACTAAGACTCTCATGTAGCCTG 59 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000018291 ENSRNOT00000024691 2 1 1 90 8 16329667 16333387 TATTACTTGGCATGACAGCC 58 16333440 16333458 TAGGCCAGGTACAAAGACC 59 NA Rattus norvegicus 81 Slain2 ENSRNOG00000002271 ENSRNOT00000003087 3 1 1 80 14 37828743 37828761 TCCATCCTCAACACCAGTG 59 37822826 37828702 GATGAGCTCTTGAAGTTACCTG 59 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 3 1 1 80 17 81378618 81378639 GTTTAAGTTTAAGCACTGGCTG 59 81378679 81383160 ATGATGGACTTCCTGGTAGC 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 3 2 2 80 4 157483386 157483588 TGACTACTTAGCTGAAGCCAG 60 157483326 157483345 GTGACAACTGACAGATGTCG 59 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000003660,ENSRNOT00000046049 2 2 2 81 1 63558873 63558892 GAGTTGAATCTGCAACAGGT 59 63557447 63558832 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 Otx1 ENSRNOG00000059469 ENSRNOT00000090664 2 1 1 81 14 106863805 106863824 CTACCCAGACATCTTCATGC 58 106862393 106863762 GTTCTTGAACCAAACCTGGA 58 NA Rattus norvegicus 81 Terf2 ENSRNOG00000020435 ENSRNOT00000027695 3 1 1 81 19 39281130 39281149 CCTTATCAGCATCACCATCC 58 39276958 39281087 TTGTCTTTCGATGCTTTGGG 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198,ENSRNOT00000083028 3 2 2 89 5 149063490 149063508 TTTGAGCATCCTGACCCTG 60 149063560 149065108 CTCGGCAGGTAATTCATGTG 59 NA Rattus norvegicus 81 Clcnka ENSRNOG00000052368 ENSRNOT00000089184 2 1 1 80 5 159940342 159941773 CTTCAACAGTGAACAGGAGAC 59 159940282 159940300 ATTTCAGGCAGGTCAAAGG 58 NA Rattus norvegicus 81 Olr149 ENSRNOG00000017138 ENSRNOT00000023002 3 1 1 60 1 169371667 169371685 ATTCCACCAGCAATGAACC 58 169371625 169371645 CCTTATCTCTGATCTGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh15 ENSRNOG00000027954 ENSRNOT00000033352 3 1 1 80 19 55683487 55683895 CACCAAGGATGAGTTCTTTATGG 60 55683933 55683953 TCCTTGTCTTCTACCTCAAGC 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 2 2 2 80 9 15114042 15114063 TCTTTATGGACATGGAGAATGC 59 15114101 15114789 TTGAGGTGTTTGATAAACTGGC 60 NA Rattus norvegicus 81 Clhc1 ENSRNOG00000004456 ENSRNOT00000006085 1 1 1 80 14 113996704 114005081 CCAAGGACATTAACACTGATGAC 60 114005115 114005139 CTTCAGTAAGACCTCTGATTAAGTC 59 NA Rattus norvegicus 81 Clhc1 ENSRNOG00000004456 ENSRNOT00000006085 2 1 1 80 14 113994196 113994215 TTGGAGGGAATCAAATGTGG 58 113994258 113996528 AAATGTCAGCTTTGCCTGG 59 NA Rattus norvegicus 81 Ndufa4 ENSRNOG00000005512 ENSRNOT00000007567 1 1 1 90 4 38239631 38240699 AAACATCCCAGCTTGATCC 58 38239559 38239577 GATTGAACAATGCCAAGCG 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 1 2 2 81 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712678 41712701 TGACTGGTAATATTCCTCTTCCTG 60 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 3 2 2 83 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712680 41712703 TCTGACTGGTAATATTCCTCTTCC 60 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000009521 ENSRNOT00000012614 1 1 1 60 15 86123327 86123346 TATGATCACAGCAAGGAGGG 59 86123286 86123304 CCTGGTTCTCGTACTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase12 ENSRNOG00000042612 ENSRNOT00000064936 3 1 1 60 15 27981592 27981612 CTAACTGAAGATGTTGTGCTG 57 27981552 27981570 CACTCTGAGGGTAGTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla5 ENSRNOG00000022296 ENSRNOT00000039228 2 1 1 81 7 124996219 124996239 AGTTTCCAGATCTCTACCAGG 59 124994739 124996176 AATAGTCAGCCACCACCTC 59 NA Rattus norvegicus 81 Slc7a12 ENSRNOG00000033830 ENSRNOT00000051741 2 1 1 80 2 88560193 88591531 CTACCAAGACCTTATAAGGTGC 58 88560134 88560152 CACTGGTGTGAGAATGAGG 58 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048370 ENSRNOT00000043828 2 1 1 60 1 68670721 68670741 TCCAGTACATCCATGATTGTC 58 68670762 68670781 TGTGAATGTGTTGAACCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nuak2 ENSRNOG00000000034 ENSRNOT00000000039 3 1 1 81 13 49101083 49103858 TCCATGAAGTGTTTGAGAACAG 59 49103897 49103918 CTGATGTAATCGTACAGATCGC 59 NA Rattus norvegicus 81 Rpgr ENSRNOG00000003013 ENSRNOT00000067603 2 1 1 80 X 14314850 14317252 AGCTTTGATGACAGATATAGGC 58 14314791 14314810 AAATTCTCCATTCCAAGCCC 59 NA Rattus norvegicus 81 Kmt2c ENSRNOG00000007997 ENSRNOT00000010349 2 1 1 80 4 6289874 6289894 TCATCGAGTACATTGGAACGA 59 6289936 6290192 CACCTCGGTTCTGAGACTC 60 NA Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 3 1 1 80 8 116865485 116865506 CTGCTTACAATTGACAAAGACC 58 116865068 116865444 CAGGAACCCAACTTTCAGG 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130,ENSRNOT00000080575 3 3 3 80 4 51914436 51917439 TTCCATAGGCTGAAGATCCA 58 51914375 51914394 TTCAAATGTCAAAGACGCGA 59 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 1 2 2 80 7 126127691 126127710 ATGTCAGAAGAATGTGCCCA 60 126127753 126128428 CACTCATCCACGTCAACAC 59 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000077052,ENSRNOT00000087355 3 3 4 106 9 111208730 111208751 TTTCCTATATGGACCTCCTCAG 59 111207018 111207037 TTACAATCTCCTTTGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 Ppp3ca ENSRNOG00000009882 ENSRNOT00000047975 2 1 1 81 2 242181014 242184113 GCTGATGAAGCCATCAAAGG 60 242184156 242184175 CGTTAATTCGGTCTAAGCCC 59 NA Rattus norvegicus 81 Sstr4 ENSRNOG00000004641 ENSRNOT00000006181 1 1 1 60 3 142740669 142740688 GAATCTGTTTGTCACCAGCC 60 142740711 142740729 ATAGCTGAGGATGAGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051533.2 ENSRNOG00000043155 ENSRNOT00000048523 2 1 1 60 3 16537365 16537384 TCATATTCCTGCTGCTCTGG 60 16537148 16537166 GGAGACTGGGTCATCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Mdm4 ENSRNOG00000009696 ENSRNOT00000012984 3 1 1 80 13 49805908 49805932 GAACTGAAGAAGATGATACTCACAC 60 49803824 49805874 CTATCAAGTCTTCATCTGCTCTG 59 NA Rattus norvegicus 81 Slc5a12 ENSRNOG00000028008 ENSRNOT00000046937 1 1 1 80 3 101802336 101806830 CACATTCTATTGTAGTTTGGGAGG 60 101806867 101806887 AAACCCACAATCATGACAACC 60 NA Rattus norvegicus 81 Fam19a5 ENSRNOG00000049349 ENSRNOT00000074625 2 1 1 135 7 128648582 128648600 GATTGTGACCCTAGACCGG 60 128648698 128690777 GATAATTCGAGCGTCCACAC 59 NA Rattus norvegicus 81 Dmrt2 ENSRNOG00000016301 ENSRNOT00000067372 3 1 1 189 1 243664363 243665790 CCACAGAGGACAAGAAGGG 60 243668044 243668063 CTCATCCTGTCACTGACAGG 60 NA Rattus norvegicus 81 Hrh4 ENSRNOG00000016887 ENSRNOT00000022744 2 1 1 81 18 4365648 4374687 TCTTCGTGGGTGTCATCTC 59 4374731 4374750 AACATGCAGATTCCACTTCC 59 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 1 1 1 62 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236310 124236334 CTGAATCTTCCTAAGTTTAGCTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Awat1 ENSRNOG00000026231 ENSRNOT00000076053 2 1 1 82 X 70409810 70410447 CCATTACAATCCTGAAGACTAAGG 59 70410488 70410506 GAAGGTCAGGAGACCATGG 60 NA Rattus norvegicus 81 Apopt1 ENSRNOG00000011542 ENSRNOT00000015373 3 1 1 85 6 136207958 136210612 TGTGCTATAACCGAGACTGG 59 136210660 136210678 CTTGCTCCACATCCTCTCC 60 NA Rattus norvegicus 81 Efhc2 ENSRNOG00000002986 ENSRNOT00000037360 3 1 1 80 X 5994223 5994241 AGGATGTGCAAGTCTTCCA 59 5994282 6006517 TTGGTCTTTGTCTTCAAACCTG 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796,ENSRNOT00000019245 2 2 2 80 1 114531378 114531483 AATGCTCGCTCATTAAGACTC 59 114531523 114531543 ATCTCAAGCGTTCAATGACAG 59 NA Rattus norvegicus 81 LOC498231 ENSRNOG00000029418 ENSRNOT00000051824 1 1 1 80 13 50250733 50250752 AGAGACCAAGCAAGATTCCA 59 50247864 50250690 GGCCTAAGTCTGAAAGCCT 59 NA Rattus norvegicus 81 LOC498231 ENSRNOG00000029418 ENSRNOT00000051824 3 1 1 80 13 50250724 50250744 AGCAAGATTCCATTGTCAAGG 59 50247856 50250683 AAGAACTGGGCCTAAGTCTG 60 NA Rattus norvegicus 81 LOC691551 ENSRNOG00000028473 ENSRNOT00000039447 3 1 1 82 1 190927271 190929670 GTTTACCTCACTGTTATCATGGTG 60 190929711 190929729 TCTGCATCGACCATGTCAG 60 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 3 1 1 60 17 43675526 43675545 CAAGCTTAGCAAGAAGGCAG 60 43675485 43675503 AGAAGCAGATTTCTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Senp17 ENSRNOG00000030159 ENSRNOT00000043708 2 1 1 90 4 161090341 161090359 GCAAACATCCTGGACAGTG 59 160865751 160865769 TTTCTTGCTCTGGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Senp17 ENSRNOG00000030159 ENSRNOT00000043708 3 1 1 92 4 161090343 161090361 ATGCAAACATCCTGGACAG 58 160865751 160865769 TTTCTTGCTCTGGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC654482 ENSRNOG00000043410 ENSRNOT00000068290 3 1 1 81 8 6223079 6223100 CTTTGTCAGTATGAAGATGTGC 58 6220630 6223037 GTTTCCGAACACTCACCAG 59 NA Rattus norvegicus 81 Mtfmt ENSRNOG00000014602 ENSRNOT00000019671 3 1 1 80 8 70981046 70981064 CTCTGGATGGAGAACACCG 60 70981107 70982409 TCCCATCACTTTCGGATCTG 60 NA Rattus norvegicus 81 Crygn ENSRNOG00000009226 ENSRNOT00000012285 2 1 1 86 4 6903267 6905955 TGTAGGCATGCATGGAGAG 60 6906005 6906023 CAATCCTCCACGAACTCCA 59 NA Rattus norvegicus 81 Olr1652 ENSRNOG00000018492 ENSRNOT00000024940 3 1 1 60 17 2704728 2704748 AACCCTCTCCTATACTCTGTG 58 2704688 2704707 ACCCTGATACTAGCAGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx6 ENSRNOG00000001873 ENSRNOT00000002558 1 1 1 80 11 87441223 87441322 AGTTCAACTTCTCCAGAACCA 59 87441362 87441382 TGGAGAGTGAATCGTAGAGAC 59 NA Rattus norvegicus 81 Faxc ENSRNOG00000010106 ENSRNOT00000013599 1 1 1 80 5 36127102 36127121 CACTGTCTTTGGACACTTGG 59 36127162 36135337 ATCAGCTCACCTTTGATTAGC 59 NA Rattus norvegicus 81 Scg5 ENSRNOG00000007542 ENSRNOT00000010679 3 1 1 81 3 105250428 105250448 CTAAGGACTTCAGTGAGGACC 60 105247247 105250385 AGACATCCGTCATCTGCAG 60 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 3 2 2 80 3 120729876 120729896 TGAGTTGTGACAAGTCAACAC 59 120729937 120749188 TTATGGAAGCCATTGCACTG 59 NA Rattus norvegicus 81 Ythdf2 ENSRNOG00000010892 ENSRNOT00000014479 3 1 1 165 5 150389973 150389991 TTACCAGTGAGGATCCGAG 58 150383804 150388801 TATGCATTATTCGGCCTTGC 59 NA InUTR Rattus norvegicus 81 RGD1563680 ENSRNOG00000004571 ENSRNOT00000006177 3 1 1 80 3 107202928 107202946 GCACCCTCATTAATGGCTC 59 107202988 107229502 TATAACAGACTTGGAGGGTGG 59 NA Rattus norvegicus 81 LOC499136 ENSRNOG00000014455 ENSRNOT00000019364 3 1 1 159 1 97785146 97785165 ACACAATGGAGTACTACGCA 59 97784023 97784041 ACACGTAGCTTAGGAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gpr37l1 ENSRNOG00000006237 ENSRNOT00000008282 3 1 1 110 13 51987296 51991884 CTTCATGGAGGTCTCCTCC 59 51987204 51987222 CTCTCAATGGGTCTCACCT 58 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 3 1 1 78 14 44548543 44613096 GACACAACCTGATCAAGGC 59 44548483 44548501 AGCCAACCCTTCTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Nhlrc1 ENSRNOG00000026286 ENSRNOT00000031656 1 1 1 60 17 18060373 18060393 TGATTGTTGCTGATACCTCTG 58 18060414 18060433 GGAAATTCCTCAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msmp ENSRNOG00000043023 ENSRNOT00000068105 1 1 1 85 5 59085329 59085562 TACTTCCAAGCTCAAGCTCC 60 59085263 59085281 CAATGGAAGCAGTCCTTGC 60 NA Rattus norvegicus 81 P4htm ENSRNOG00000020249 ENSRNOT00000027466 2 1 1 80 8 117370779 117382048 CCATTGCTCTTCGAAATCCC 59 117370718 117370737 TAACCCTTTCATCTGTGCCA 59 NA Rattus norvegicus 81 Cct5 ENSRNOG00000011632 ENSRNOT00000015886 1 1 1 80 2 84671449 84671471 GAGGACACCAAACTTATAAAGGG 59 84671312 84671411 AGCATTCAACACTTCTTTCGG 60 NA Rattus norvegicus 81 Col23a1 ENSRNOG00000046785 ENSRNOT00000004510 1 1 1 87 10 34921629 34923242 TTAGATGCCCTGAAGGGTC 59 34923978 34923996 CAGGCAATCCAAGTTCACC 59 NA Rattus norvegicus 81 AABR07068221.2 ENSRNOG00000049962 ENSRNOT00000064642 2 1 1 80 9 91048947 91049969 AACTTCCTCTCAGCTGTTCC 60 91048886 91048908 TCTTCTACTATGACTTCCAGCTC 59 NA Rattus norvegicus 81 Olr1597 ENSRNOG00000003555 ENSRNOT00000004719 3 1 1 60 13 92342951 92342969 AATCATCCCACGAATGCTC 58 92342909 92342929 ACCCATAAAGGAAATCACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1600 ENSRNOG00000047062 ENSRNOT00000050469 3 1 1 60 13 92376952 92376972 TAGGCTTCTCTGTTTACCCAC 60 92376994 92377012 TACAGGCAAAGGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr686 ENSRNOG00000045702 ENSRNOT00000042640 3 1 1 60 3 78010047 78010065 CTAAAGCTTGCCTGCACTG 60 78010089 78010107 ACCCACTATTGGCAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 2 1 4 74 2 118547192 118547211 GTTTATATGGACCAGTGGCC 59 118547245 118584893 ACACTTAGGAATATAGGAGCAC 57 NA DesignNoJunction Rattus norvegicus 81 Olr1630 ENSRNOG00000012515 ENSRNOT00000016683 2 1 1 60 15 26939387 26939406 GTGGACCCAATGAAGTAGAC 58 26939346 26939364 CAGGCAAGTTTGACCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 2 3 4 85 X 115561441 115563049 TACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 3 3 4 85 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563095 115563113 GTACTGAATGGCTCAGGCA 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 1 3 3 80 18 73272160 73272181 CATTCTTTCTGGAAGCATTGAG 58 73272220 73274062 CATCATCCCTGCAATCATCTC 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 2 3 3 80 18 73272157 73272176 AGACATTCTTTCTGGAAGCA 57 73272219 73274059 CATCCCTGCAATCATCTCC 58 NA Rattus norvegicus 81 Eaf1 ENSRNOG00000019559 ENSRNOT00000026525 1 1 1 80 16 7589208 7591330 CATTCGCTATGACTTTAAGCCA 59 7591370 7591389 GTGACTTCATCTCCTTTGCC 59 NA Rattus norvegicus 81 Snrpd1 ENSRNOG00000013714 ENSRNOT00000018646 2 1 1 81 18 1868733 1868754 ATTGAGTCATGAAACCGTAACC 59 1868795 1872133 CATGCTGACATCTACACCTG 59 NA Rattus norvegicus 81 Slc26a6 ENSRNOG00000020450 ENSRNOT00000027762 2 1 1 81 8 117654153 117654252 AGTGGACCTGCTAATCTGG 59 117654297 117654315 GACTATGGAGACTGCCAGG 59 NA Rattus norvegicus 81 Drd1 ENSRNOG00000023688 ENSRNOT00000030893 1 1 1 60 17 11101907 11101925 CGAGGATGACAACTGTGAC 58 11101948 11101967 GATGAGGGACGATGAAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725,ENSRNOT00000077935 1 2 2 80 6 96836038 96836057 ATGGTGCTAACAGATGATGG 58 96836098 96836200 TAGTTCAAACTGAGTCAACCC 58 NA Rattus norvegicus 81 Sap30bp ENSRNOG00000005482 ENSRNOT00000007362 3 1 1 80 10 104512945 104512963 CAAGAAAGGCACCACAACC 60 104513007 104513285 TTCCTCTTCTGGGCATCTG 59 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000016195 2 1 2 80 2 238566924 238577276 AGGCTCCAAGGTTCTTTCC 60 238577316 238577338 GTTTCACTCTGATCGATAAGTGC 60 NA Rattus norvegicus 81 Wdsub1 ENSRNOG00000005990 ENSRNOT00000008168 1 1 1 80 3 45930685 45930704 ATCCCTGACGAGTTCATCTG 59 45925547 45930643 CTCGTAGGAGTAGCCATCTG 59 NA Rattus norvegicus 81 Ubxn10 ENSRNOG00000027731 ENSRNOT00000000167 3 1 1 60 5 157160782 157160801 AGACGTTTCTCTGACCTCAC 60 157160741 157160763 GTACAGATTTATGAAGGATGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aup1 ENSRNOG00000007842 ENSRNOT00000010602 2 1 1 86 4 113889742 113889760 ATTTGCCAAGTCTTCCTGG 58 113889809 113889930 TCTCTGAATCTCCTTCTTGC 57 NA Rattus norvegicus 81 Haus1 ENSRNOG00000017067 ENSRNOT00000023101 1 1 1 80 18 74145246 74145265 CTCCAGAACATGGACTTCCT 59 74144837 74145204 GGATGAAAGTTGCTCCTCTG 59 NA Rattus norvegicus 81 Fndc8 ENSRNOG00000008264 ENSRNOT00000010924 2 1 1 80 10 70248888 70248908 ACGAGTTACTGTCTCACTGTC 60 70248948 70249480 CACGGTTGCAAACTTATAGGG 60 NA Rattus norvegicus 81 Pfn4 ENSRNOG00000050386 ENSRNOT00000074570 3 1 1 80 6 30031724 30031742 GTATCTTCTGGTGGCAACC 58 30028517 30031681 AGATACTCTCCCAGCTTCTC 58 NA Rattus norvegicus 81 Rpl35 ENSRNOG00000014272 ENSRNOT00000019162 1 1 1 80 3 23297405 23297423 TCTGAAGGTGGAACTGTCC 59 23296870 23297362 ACGACTCGTATCTTGGAGAG 59 NA Rattus norvegicus 81 Mknk2 ENSRNOG00000029028 ENSRNOT00000041106 1 1 1 80 7 11912666 11912767 GCAGATTTGAAGATGTCTACCA 59 11912808 11912826 GATTGACACAGGTCTGCAC 59 NA Rattus norvegicus 81 LOC100911064 ENSRNOG00000060632 ENSRNOT00000078704 1 1 1 60 15 36213271 36213289 TGTTGCCATCTGTAACCCA 59 36213229 36213250 AGAAGTGTAAATCTGAGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 3 1 1 61 X 70428078 70428334 CTGGACTAAGGAAGCTAGGG 59 70428036 70428057 CCTAGTGATGTGAATAGCAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417,ENSRNOT00000082891 3 2 2 80 18 11846782 11847859 TTCAACAGATCCAATCCGAC 58 11846721 11846741 CGGGTTCTTTATCAACTCCTG 59 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 2 2 2 80 1 257636715 257636733 TTGTTTGTGGCCCTTTGTC 59 257636774 257637944 ACAGCAAAGTAGGAATTTCTGG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758,ENSRNOT00000037100,ENSRNOT00000011801 2 3 3 80 13 52363976 52412930 TCAGCCAAATGCTAGATCC 57 52363914 52363932 TTTCTTCCAGGTTCTGTCG 57 NA Rattus norvegicus 81 Itih1 ENSRNOG00000033386 ENSRNOT00000051751 2 1 1 80 16 7025087 7025517 TCAGTGACTTTGCCATAACAG 59 7025027 7025046 GGTATTGCTTCCATGCAGTC 59 NA Rattus norvegicus 81 LOC687088 ENSRNOG00000059135 ENSRNOT00000072772 2 1 1 60 1 230217220 230217241 GAATAGGACAGAAGTGACAGAG 58 230217261 230217280 CTGTAGGTGTGGGTCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq2 ENSRNOG00000011624 ENSRNOT00000049961 2 1 1 80 3 176597982 176598675 CTCAGAAGAAGCAAGCCTC 58 176597920 176597940 AGATCTTCAGTCACAAACTCG 58 NA Rattus norvegicus 81 Smc1b ENSRNOG00000032570 ENSRNOT00000044883 1 1 1 80 7 126004492 126007959 AAGACGAAAGGCAGTAGCA 59 126004430 126004450 TGCTTTAAGTCACTTGACCCT 60 NA Rattus norvegicus 81 Dctpp1 ENSRNOG00000017850 ENSRNOT00000024074 2 1 1 86 1 198703827 198705709 GAACTCTTTCAGTGGAAGTCTG 59 198703762 198703780 ACTAAGCTCCTCCTGAAGG 58 NA Rattus norvegicus 81 Mir3556b ENSRNOG00000035509 ENSRNOT00000053632 2 1 1 62 13 113782640 113782661 CATAACCGATTTCAAATGGTGC 59 113782599 113782617 CTGACCGATTTCTCCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 3 2 2 81 8 117592546 117592564 CCTTGGAGCATGAAGTGTC 59 117592606 117598489 AGATGAATTTGTACTGGTTCCG 59 NA Rattus norvegicus 81 Zfp566 ENSRNOG00000048138 ENSRNOT00000074582 1 1 1 80 1 88416579 88420429 GCTTTCAATGGTCCTGGAG 59 88416517 88416535 TGCGCCATTTCTATCTCAC 58 NA Rattus norvegicus 81 Gab2 ENSRNOG00000011882 ENSRNOT00000016361 3 1 1 80 1 162276793 162276812 AGAAACAACACTGTCATCGA 58 162276853 162277443 GTTAAAGGTGTGGTTGATCCT 58 NA Rattus norvegicus 81 En2 ENSRNOG00000006846 ENSRNOT00000008951 1 1 1 80 4 439338 439356 CTGCACACGTTACTCTGAC 59 442528 442546 TTGTCCTCTTTGTTCGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 1 2 2 80 6 42274335 42274444 AGATACCCAAGAACAACTGTC 58 42274486 42274504 AGCTGCTTCTCAAACTGTG 58 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 2 2 2 80 6 42274519 42275871 CACTCAAGACTCAAGCTGTG 59 42275914 42275932 CATCTGTGTCACTACCACG 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600,ENSRNOT00000067118 2 2 2 80 6 136414889 136415970 ATGAATGGCAATCTGTCTGC 59 136414828 136414846 GATGGCAGTCTGAACTTCC 58 NA Rattus norvegicus 81 Mki67 ENSRNOG00000028137 ENSRNOT00000038176 2 1 1 80 1 208008093 208008198 CCAGTACTCCAAAGAAACCT 57 208008032 208008051 TTACAATGGTACAGGGTGAG 57 NA Rattus norvegicus 81 Pax5 ENSRNOG00000024729 ENSRNOT00000033373 3 1 1 81 5 60171671 60171689 GTGTCAGCTCCATCAACAG 59 60158857 60159422 TTGAGGTGCGAAGAATTTGG 59 NA Rattus norvegicus 81 Agtr2 ENSRNOG00000050006 ENSRNOT00000074269 2 1 1 89 X 119390213 119391119 TCTGGAAGAAAGAGTGTAAGGA 59 119391169 119391187 GGTGATGTTTCTGCTGGTG 59 NA InUTR Rattus norvegicus 81 Ldlrad1 ENSRNOG00000037795 ENSRNOT00000057372 3 1 1 80 5 126818033 126818927 GAACTTGTGTCGAGATTTGC 58 126818969 126818988 GAGTAGATCCAGGAGTCTGG 58 NA Rattus norvegicus 81 Tmem59 ENSRNOG00000009778 ENSRNOT00000013224 2 1 1 80 5 126794375 126794393 GCACAGAGCTTCATAACCT 58 126794435 126796189 CGGCTTAGACTGGAATATGAC 58 NA Rattus norvegicus 81 Arl2 ENSRNOG00000021010 ENSRNOT00000028525 1 1 1 80 1 221507384 221507404 AGAAGATGTGGACACCATCTC 60 221507235 221507344 CAGATGTTCAGCTTGAATCCC 59 NA Rattus norvegicus 81 AABR07061068.1 ENSRNOG00000057187 ENSRNOT00000072325 2 1 1 60 4 103496072 103496093 AGAGTCTGCTACATAGTAATGG 57 103496114 103496132 TTTCCTGGCTTCTGAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031,ENSRNOT00000060264 3 2 2 80 5 59399496 59399515 GAGCTCTGTGAAGTAAACCG 59 59399557 59402202 CAATTTGCAGCCTTGAACAC 59 NA Rattus norvegicus 81 Frk ENSRNOG00000000543 ENSRNOT00000000653 1 1 1 80 20 41344897 41346737 GCCATGCTTAAAGATTCAGGT 59 41346779 41346797 GAGTTGCGGTCTATCTCCC 60 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000081758 1 1 2 80 7 143967292 143967310 TTGCCAGTAATCTTCGTGC 59 143960108 143967249 CATAGTGAGCTTCTTCCTGG 58 NA InUTR Rattus norvegicus 81 RGD1310257 ENSRNOG00000014186 ENSRNOT00000018989 2 1 1 63 1 75354550 75354568 ATGTCCAACAAGTCCACAG 58 75347354 75347372 GCTTGACAGTGATGAAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Creld2 ENSRNOG00000004659 ENSRNOT00000006357 1 1 1 80 7 129814229 129814249 ATTTGAGTGGTTCTGTGTACG 59 129814290 129815041 CCCTGGCATTCTTTACAGTC 59 NA Rattus norvegicus 81 Mir181d ENSRNOG00000036417 ENSRNOT00000054529 3 1 1 64 19 25290102 25290120 ATTCATTGTTGTCGGTGGG 59 25290056 25290074 CCACAGTGACATTCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdcp2 ENSRNOG00000009221 ENSRNOT00000012427 1 1 1 80 5 126698651 126703610 GCTATGGAAGGTGTCAAGTG 59 126703651 126703671 ATACAGACTTGGGAAGTTTGG 58 NA Rattus norvegicus 81 LOC497899 ENSRNOG00000022555 ENSRNOT00000038838 3 1 1 173 10 36710610 36711487 CTGGGTTATACAGAAGCAAACC 59 36709956 36709978 CATTTCCTGTTCAACTACTTCCC 60 NA InUTR Rattus norvegicus 81 Vom1r23 ENSRNOG00000047128 ENSRNOT00000059638 3 1 1 60 1 61686791 61686811 GGGTTCTGATGCACTTAACTG 59 61686751 61686770 TGGAGTATGCCTTTGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 80 10 53781375 53781393 CCTATGTGAAAGCAACCGT 58 53781436 53781550 TAACTGTGACAGTAGCTCCA 58 NA Rattus norvegicus 81 Lrp12 ENSRNOG00000004152 ENSRNOT00000005668 1 1 1 80 7 78867206 78867224 CTGCTTGTCATTGCTCTGG 59 78865639 78867165 CAACTGGGTCTCAAATGATCTC 59 NA Rattus norvegicus 81 LOC619574 ENSRNOG00000036666 ENSRNOT00000054922 3 1 1 80 10 110429239 110429682 CTATTACAGTGGAGATAGTCTGGG 60 110429182 110429201 TCCTCCAAGTTCTGTACAGC 60 NA Rattus norvegicus 81 Mrps34 ENSRNOG00000015479 ENSRNOT00000021075 3 1 1 125 10 14257551 14257654 CTTTCAAAGGGAAGAGTGAGG 59 14257741 14257759 ATCTGTCCTCTGCTTTCCC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 1 4 7 81 1 83764531 83765550 TTCCATTGGAAAGCGATTCTG 59 83765593 83765611 GTTCTGCAAGATGGTGGTG 59 NA Rattus norvegicus 81 Pcbd1 ENSRNOG00000000566 ENSRNOT00000000687 2 1 1 80 20 30694402 30695946 TTAACGTGTACAACAAGGTCC 59 30695988 30696006 TGGCCAGGTTTATATCCCG 59 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 1 1 1 80 7 12344747 12344766 ATCCAGGTTAAGAGCTCAGC 60 12342981 12344705 ATTCTGAGAGGCCAAGAAGG 60 NA Rattus norvegicus 81 Phlda2 ENSRNOG00000020614 ENSRNOT00000027972 3 1 1 167 1 216703151 216703169 ATCGACTACCAGAACCGTC 59 216702704 216702723 TATCTTCGGTGAAGAACAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100363043 ENSRNOG00000029146 ENSRNOT00000049927 3 1 1 65 15 33333517 33333535 CACTCTTGTGATCTCTGGG 57 33336745 33336763 GTGGAAGACGATTCCAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 1 2 2 80 4 57561514 57561534 GCAAACATGAGGTTACAATCC 58 57560184 57561474 CTTCATATGGTGTTCCTTGTG 57 NA Rattus norvegicus 81 Nhej1 ENSRNOG00000018162 ENSRNOT00000024444 2 1 1 80 9 82312725 82312743 CATTGCTTCGGATGAAGGA 58 82311886 82312681 CTGTCTTCAATCGACCTCG 58 NA Rattus norvegicus 81 Kcnk4 ENSRNOG00000021140 ENSRNOT00000028704 1 1 1 80 1 222185630 222185648 AACCACTCATCAGCTTGGA 59 222185443 222185587 TATATTGCCGTAGCCGATGG 60 NA Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 2 1 1 80 7 127189312 127223131 AGTACACAGACCAGGAGGA 59 127223175 127223193 TATCAGCCTCAATGTTGCG 58 NA Rattus norvegicus 81 Mfap3l ENSRNOG00000011775 ENSRNOT00000015759 3 1 1 86 16 32753180 32753204 CTATCATGTTACTCTACACATCCTG 59 32752410 32753139 ATCAAGGATCTAAGTTCCTGGT 59 NA InUTR Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 3 2 2 84 6 137210243 137212042 GGTCTTCGAAAGAACCAAGC 60 137212087 137212107 GTTGATGGAACAACCTTCACC 60 NA Rattus norvegicus 81 LOC100909538 ENSRNOG00000048428 ENSRNOT00000074545 2 1 1 63 15 2733221 2733239 CAGGGTGGATGAAGTCTGG 60 2734068 2734087 AAATCGGTTATTTGCCGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 2 1 1 77 15 33773992 33774732 ATGGAGGCACTTACCAAGG 59 33773933 33773951 GGTGGTAGGGTACACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 3 1 1 79 15 33773992 33774732 ATGGAGGCACTTACCAAGG 59 33773931 33773949 CTGGTGGTAGGGTACACTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0748.1 ENSRNOG00000022251 ENSRNOT00000029030 1 1 1 60 X 73988830 73988850 AGAGACACTGACCTTCAAGAG 59 73988790 73988811 GTAAAGCAAAGCATAGACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0102.1 ENSRNOG00000008114 ENSRNOT00000010872 1 1 1 60 8 10140456 10140477 AGAGGAAATGGCTAGTGATGAG 60 10140498 10140516 ATGGCTTCTTTGGTCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000068197,ENSRNOT00000077146 1 2 2 80 7 12505611 12505629 GTATGATGCAGAACGGGAC 58 12505672 12505793 TCACCGTACTTGATCTTGCT 59 NA Rattus norvegicus 81 Patl1 ENSRNOG00000021052 ENSRNOT00000066247 3 1 1 80 1 228347101 228347119 CTGAATTCCAGCATCTGGG 58 228347162 228347670 CACTGTAGGCATTTCCTGAG 58 NA Rattus norvegicus 81 Ctsq ENSRNOG00000017946 ENSRNOT00000024208 1 1 1 80 17 3995054 3995755 CTACCAGAAAGGTGTTTATCATGAG 60 3995793 3995811 TCAAATCCATAGCCCACCA 59 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000077226 1 1 2 80 1 198112418 198116489 GGAATTAGAGGAGGCATTGC 59 198112357 198112378 TCAATGTAGTGGGCATTAAAGC 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 2 2 3 83 2 261397314 261399391 GTTAATTCACTCCGGTGGC 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 LOC690918 ENSRNOG00000042246 ENSRNOT00000067992 1 1 1 118 5 56798684 56798702 TAACTGGAGACGCTGAGAG 59 56799035 56799056 CGGATTTATGTCATCAGGTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Col23a1 ENSRNOG00000003349 ENSRNOT00000064078 3 1 1 89 10 37014996 37015014 CAGGATCTTAGATGCCCTG 57 37016662 37017365 AATCCAAGTTCACCCTTGG 58 NA Rattus norvegicus 81 RGD1559972 ENSRNOG00000031273 ENSRNOT00000041326 3 1 1 60 11 82366305 82366323 CCACTTGAAGAGGAACCAG 58 82366263 82366284 CAACGTCCATAATTTATCCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clca2 ENSRNOG00000013771 ENSRNOT00000018435 2 1 1 80 2 250980266 250980288 GTACAGATTCTAATACCTGCCAC 59 250977527 250980228 GACATTTGCCTTGTCAAAGGA 60 NA Rattus norvegicus 81 Trappc8 ENSRNOG00000022202 ENSRNOT00000021263 2 1 1 80 18 15311455 15311474 AGCCTGCAGAAGGATTAGTC 60 15311515 15319816 CAAACCATGGAGTAGTAGCAC 59 NA Rattus norvegicus 81 Snrpa ENSRNOG00000001501 ENSRNOT00000002053 3 1 1 80 1 84005465 84007718 GAGAAGATCAAGAAAGATGAGCTC 59 84005408 84005428 CACCAGGATATCCAGGATCTG 60 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678,ENSRNOT00000047854 1 2 2 80 5 173595748 173595934 CTGTCAGACAGTCCTGGAG 59 173595686 173595706 CCTTTCAGTTCCAGGTAGGAG 60 NA Rattus norvegicus 81 AABR07029195.1 ENSRNOG00000003401 ENSRNOT00000004583 2 1 1 80 10 12871177 12871196 CACCTTTGACGCTATCTCCA 60 12871098 12871136 TTCACAGATTTGGTGAACACG 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245,ENSRNOT00000041577 2 2 2 80 8 22619280 22619298 CCTGATGGCCAAATCTGTC 59 22619340 22619549 AATGGGATTTCTATCCTGTGC 58 NA Rattus norvegicus 81 Xrcc3 ENSRNOG00000012141 ENSRNOT00000016208 3 1 1 91 6 136371786 136371874 GTCTGCAGGTTTGTGTCTC 59 136371713 136371731 CCATCAGTTGCATCAGGAG 58 NA Rattus norvegicus 81 Olr302 ENSRNOG00000045957 ENSRNOT00000051727 2 1 1 60 1 213071251 213071271 TCATCCCACCTCATTGTAGTC 59 213071290 213071311 GACTGATATAGGCACAGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 3 2 2 80 14 39755953 39786536 ACTGTGTTTGGAGTAACAACTG 59 39786577 39786595 ATAGGCCACTTTGGGAAGG 59 NA Rattus norvegicus 81 AABR07065656.7 ENSRNOG00000055719 ENSRNOT00000042728 1 1 1 64 6 138954280 138954301 GCCACTTATTACTGTACAACAG 57 138953964 138953983 ACACAGACAAAGAAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Lrrc32 ENSRNOG00000015310 ENSRNOT00000020520 2 1 1 80 1 163449698 163453631 TGTAGGACGGTGAACAAGG 59 163453674 163453693 TTGGATGTCCAATGAGAGCA 60 NA Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 1 1 1 80 14 62577400 62594261 CTATGGATCCAGACAACCAC 58 62577339 62577360 TCTGATGACAAGAACATCTCTG 58 NA Rattus norvegicus 81 Kif2b ENSRNOG00000002535 ENSRNOT00000003421 1 1 1 60 10 79096054 79096072 CTTACCCTCCAACTGACCA 59 79096012 79096030 TCCGAATTTGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 3 4 4 81 17 4256428 4256725 TACAACACGAACGAAGAAGG 58 4256769 4256787 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Pcgf1 ENSRNOG00000008360 ENSRNOT00000011173 2 1 1 80 4 113912373 113912391 TGACCACTCTAAAGCCCAC 59 113912434 113912671 TTGTCTTTGCCAGAACTCAG 59 NA Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 1 1 1 80 4 56981523 56981541 AGGAGTTCTCCTTCGTCAG 59 56981584 56996271 TGACCATGGAAATTACCCAG 58 NA Rattus norvegicus 81 Atxn10 ENSRNOG00000014637 ENSRNOT00000021071 1 1 1 80 7 126283919 126283939 TTTAAGTCTCACCTCATCCGT 59 126283979 126327319 ATCCAGCTCATTCACTTTGTC 59 NA Rattus norvegicus 81 Zfp64 ENSRNOG00000012762 ENSRNOT00000017063 2 1 1 85 3 165739859 165739877 GTCAGAAGAGACAGTGCCT 59 165728315 165739811 GAGCTGCAACTGTGATAGTC 59 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 2 1 1 80 10 53821148 53821167 TGATGACCCACCTTCATGAG 60 53821207 53821314 CTGAGTAGGTGTAGATCATCCA 59 NA Rattus norvegicus 81 Exosc3 ENSRNOG00000012409 ENSRNOT00000016582 2 1 1 80 5 60868848 60870634 ACCAAATGTACAGGTTGGAG 58 60868787 60868807 ATACAGACCATTTCTGGTTCC 58 NA Rattus norvegicus 81 Dhx37 ENSRNOG00000022171 ENSRNOT00000030823 1 1 1 80 12 36600005 36600969 TGTCACATCGGGTTGTCTC 60 36601009 36601031 CATCTGTCATGAACTTGATCCTG 60 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 1 1 3 80 4 163440921 163440941 TGGATTCTTTCGAAAGAGCAG 59 163440556 163440880 AGCATCTCCGTTATCCTTGG 60 NA Rattus norvegicus 81 Lsm3 ENSRNOG00000008733 ENSRNOT00000011557 3 1 1 80 4 123162985 123165406 GAGGCAGATTACATGCTTACG 59 123165446 123165466 CAATCTCTATCGTCGTCACAG 58 NA Rattus norvegicus 81 Smpdl3b ENSRNOG00000042326 ENSRNOT00000067905 1 1 1 80 5 150929969 150931906 CAAAGAAGGTGCCTTCTATTCTG 60 150929911 150929931 TACAGATTGGTGTTGAGGACC 60 NA Rattus norvegicus 81 Cerk ENSRNOG00000017022 ENSRNOT00000022882 2 1 1 80 7 127019980 127019998 CTTATCCGGAAATGCTCCA 57 127018921 127019936 AGTGAAGCCAAACTGATCC 58 NA Rattus norvegicus 81 RGD1559786 ENSRNOG00000012724 ENSRNOT00000065275 2 1 1 81 5 127491632 127491839 GGAGAACTCTATTGAAATTCTGAGC 60 127492939 127492963 CTCTACTATTGTCTTGAACTTCTCG 59 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 1 1 1 80 3 12502825 12502844 TATTCATCCCAGATAGGGCA 58 12494595 12502783 CTTGTTTAGTGTGGTTCGAC 57 NA Rattus norvegicus 81 Dkk3 ENSRNOG00000016343 ENSRNOT00000022301 3 1 1 84 1 176976048 176976066 AACTACCACAACGAGACCA 59 176974099 176976003 TGTTGGTTATCTTGTGAACCTC 59 NA Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000078036 1 1 2 60 20 3938479 3938497 GGACACAGAAATGGCTTGG 59 3938519 3938539 AAGCATGTTTCCCATAAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spire2 ENSRNOG00000016920 ENSRNOT00000022823 2 1 1 80 19 56161396 56161773 CTCCACTGAAGCAGGTCTC 60 56161817 56161835 CCTCCAGGATCTTCTCGTG 59 NA Rattus norvegicus 81 Prr14 ENSRNOG00000018518 ENSRNOT00000055002 1 1 1 80 1 198915583 198915603 ATTCAGCAACAAATACGGAGG 59 198915651 198915922 ATTCAAGGCACTGATTGGTC 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 2 2 2 89 3 122942747 122943060 CTTCTCAATGCCAGGATGTG 59 122942677 122942695 TGTTGACCATGGGAGACAG 59 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330,ENSRNOT00000056058 3 2 2 80 4 157154004 157154024 CACCTTTACTTCACCCATCTG 59 157153645 157153964 GATGCCTCCTGAGATTATCTG 58 NA Rattus norvegicus 81 Mir881 ENSRNOG00000041299 ENSRNOT00000063052 1 1 1 60 X 151283957 151283978 AATATTCAGAGTGGTAGCAGTC 58 151283918 151283939 ACTCTATTCAGAAATGCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5a1 ENSRNOG00000017032 ENSRNOT00000022892 3 1 1 80 18 74163369 74163853 GACAGTACTCTCCCATGGC 60 74163893 74163915 GCTCCAGTTTATCAAGATAACCC 59 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000071384 3 1 3 82 1 164705858 164706243 AACTCTAGATGTTCCAGCCA 59 164706288 164706306 CTACTGACCCATTGCAGGT 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 3 2 3 86 6 135088718 135089318 GCCTTCAGATCAACTCCAG 58 135087759 135087779 CTGAGTCTCCATCATAAGGGT 59 NA Rattus norvegicus 81 Gabrr1 ENSRNOG00000007603 ENSRNOT00000010172 2 1 1 80 5 48400958 48401914 TCGAAAGCTATGCCTACAC 57 48401955 48401976 TCCTCTCATCTGTCTTTAAGGA 58 NA Rattus norvegicus 81 RGD1307315 ENSRNOG00000013690 ENSRNOT00000018568 1 1 1 80 6 137392027 137392767 GATTCAGACCAAGCTCTCAG 58 137392809 137392828 AGTGGTGTCTTCAGAAACAG 58 NA Rattus norvegicus 81 Zfp52 ENSRNOG00000042826 ENSRNOT00000050119 2 1 1 80 1 61406308 61418950 AGCTAAGGATCCAGAACCA 58 61418993 61419012 GCCATTTCTTCCTGTTTCTC 57 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 1 1 1 60 4 163122245 163126754 TTAAGAACAAGGATGAGCTGG 58 163126771 163126794 GCTAGCCAATAATTGTATAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 2 1 1 60 4 163120440 163120464 GATTCTGATTCTTCTATGCCTTCTG 60 163120481 163121030 AAAGATGCATCCTAAGGCCA 60 NA DesignNoJunction Rattus norvegicus 81 AABR07058267.1 ENSRNOG00000005486 ENSRNOT00000007587 2 1 1 80 7 107413914 107414164 CTTCAGTACCAGAAGTGCC 58 107414205 107414226 CACAACTTAAATCAAGAGGGAG 57 NA Rattus norvegicus 81 Syt10 ENSRNOG00000014296 ENSRNOT00000019406 3 1 1 80 7 130771983 130775418 TCATGGATTACGACAGGGTG 60 130771922 130771940 CTCTTCCAAGACCCTCAGC 60 NA Rattus norvegicus 81 AABR07012635.1 ENSRNOG00000053190 ENSRNOT00000087593 1 1 1 80 2 200820328 200820347 TAACAAGGAGGCTCCAAGAG 59 200806171 200820285 GGCAGCATTCTGATGTCTG 59 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800,ENSRNOT00000081373 2 2 2 80 15 39645006 39645025 TGGTCAAACAAGTGGTTGAG 59 39645067 39648855 CCCAAGCAAATAACTCTCCA 58 NA Rattus norvegicus 81 Sprn ENSRNOG00000018927 ENSRNOT00000025609 2 1 1 60 1 212622187 212622205 AGGAGTCTACAGCTACTGG 58 212622145 212622163 AATACGTGGACTGTGTACG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir742 ENSRNOG00000040422 ENSRNOT00000062175 3 1 1 60 X 151260357 151260375 CACATGGTTGCTAATCACG 57 151260315 151260336 AGCTTTACTTTACCCAACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu3 ENSRNOG00000018106 ENSRNOT00000024420 2 1 1 80 1 164810064 164814474 TGAGCTGAGAAGTCATGGA 58 164810002 164810023 TAATCCTGTTCTGTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Reep1 ENSRNOG00000008481 ENSRNOT00000064772 2 1 1 86 4 99681305 99681326 GTCAAATGGATGATGTACTGGA 58 99681372 99696932 GAATGGAAACCAGCAAAGGA 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 1 3 3 80 6 132777441 132777460 CTTTCCCGAAGATCTTCCGA 60 132777175 132777398 TTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000066439 1 2 3 82 11 11516875 11585030 ATTCGGACTGACGGATCTC 59 11516811 11516829 TTGGAGACGATGACGTCAG 60 NA Rattus norvegicus 81 Slc25a46 ENSRNOG00000017091 ENSRNOT00000023032 2 1 1 80 18 24371278 24381689 TCGAAACAGTACAGAGTGAG 57 24371217 24371235 CTATCACCCGTCCAATTCC 58 NA Rattus norvegicus 81 Zc3hc1 ENSRNOG00000010154 ENSRNOT00000013604 3 1 1 80 4 57692207 57693191 TGACAACTATGTGCTTGACAG 59 57692147 57692166 CATCGATTTGGAAATCGAGC 58 NA Rattus norvegicus 81 Olr937 ENSRNOG00000049098 ENSRNOT00000050023 1 1 1 60 7 8810428 8810448 GAAATCTCGCTGACATCTACC 59 8810388 8810409 TATTCATGGTCACTATGCTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir676 ENSRNOG00000061112 ENSRNOT00000090243 2 1 1 61 X 70207031 70207049 GACTCTGCAACCTTAGGAC 58 70207074 70207092 CATAGCTCGACAAGCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd13c ENSRNOG00000011340 ENSRNOT00000015170 3 1 1 81 2 264809250 264814658 AGGTATCAATATCAGGCTTGAC 58 264814700 264814718 GAAGATGAAGCTCAGGTCC 58 NA Rattus norvegicus 81 AC094246.1 ENSRNOG00000022718 ENSRNOT00000031545 2 1 1 83 1 255710786 255710829 GGACATTTACTACATCAGGCTG 59 255710873 255710891 GTGAACTGGTTGATGGCAG 59 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 3 1 1 80 1 27561987 27562005 CTAGTCCTCTGGGTGACCT 60 27749859 27936943 AAGGTCTGTTTCCCTACTGAG 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 1 1 1 80 1 274631219 274632762 CCAAAGAAAGGTGGTGCAG 59 274632806 274632824 TTTCACATCCACCTCCTCC 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 3 1 1 80 1 274634568 274634586 TGAGAAGACGTTAACACCC 57 274634629 274640028 AAATCCCTTAACATCTCCGC 58 NA Rattus norvegicus 81 Fam43a ENSRNOG00000001728 ENSRNOT00000002355 3 1 1 60 11 73677730 73677748 CACCACTTCCTCTGTCAGG 60 73677688 73677709 CTAATAAGCTGTGACAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl9 ENSRNOG00000006335 ENSRNOT00000008510 2 1 1 60 5 107324563 107324581 CAGTCAGACAGAACTGCCA 60 107324603 107324623 AAACTCCTCCTAACGTAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547344 ENSRNOG00000030156 ENSRNOT00000041707 2 1 1 86 18 19275141 19275159 CTTGGACACAACAGCACAG 59 19272826 19275093 AGTATCTGGGTTTGGTGTCTG 60 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422,ENSRNOT00000071522 2 2 2 80 7 117678338 117678359 TCAGTACTTTGTGGACTTTGTG 59 117678179 117678298 ATCAAATCCTCCAATTCGGG 58 NA Rattus norvegicus 81 LOC498368 ENSRNOG00000002191 ENSRNOT00000002982 2 1 1 91 14 46052423 46053140 CAAAGCTATCTCTTTGATCCAG 57 46052353 46052371 CTGACAGTGTCATCCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC683745 ENSRNOG00000021575 ENSRNOT00000060160 2 1 1 80 13 56693421 56693440 CCTTCAGGATCATACTGGGA 58 56676781 56693380 TAAACATGTCTTGAGGCATGG 59 NA Rattus norvegicus 81 Rn60_10_0698.7 ENSRNOG00000051109 ENSRNOT00000076821 2 1 1 60 10 70097746 70097767 TGAGCCACTCATTGATTTAGAC 59 70097707 70097728 CAATGCTGATGGAAGTAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept14 ENSRNOG00000038495 ENSRNOT00000068460 3 1 1 85 12 30606207 30606225 TGAATGTTTGCCCACTCAG 58 30606273 30607031 CAATTCCAGTTTCTCCCACG 59 NA Rattus norvegicus 81 Rnf217 ENSRNOG00000013323 ENSRNOT00000017831 2 1 1 80 1 28386914 28386934 GGATGCAAATATCGCTACCTC 59 28386976 28389611 GAAGAGCTTTCCAGCACAG 59 NA Rattus norvegicus 81 Krtcap3 ENSRNOG00000047941 ENSRNOT00000073236 2 1 1 113 6 26486161 26486264 GACTACTGAGCGTTACCGT 59 26485945 26485963 CAGACAAGAGCAGGTTCAC 59 NA Rattus norvegicus 81 Mlx ENSRNOG00000019983 ENSRNOT00000027116 1 1 1 80 10 88998369 88998387 GGGAGTGTAGTGTCCAGAG 59 88998430 88998709 ATCGCTGTCCTCATCATCTG 60 NA Rattus norvegicus 81 AC103169.1 ENSRNOG00000054122 ENSRNOT00000088247 1 1 1 60 7 9104618 9104639 ATTCCTGCTTCTTACCTATCTG 58 9104579 9104597 GGTGAGTGTGATGATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 1 2 2 86 18 24744870 24745415 ACTCTGAAGAACAAGTTTGTGG 59 24745461 24745480 CCTCTTCTTCAGTTCCAGGG 60 NA Rattus norvegicus 81 Ccdc86 ENSRNOG00000020925 ENSRNOT00000028405 1 1 1 80 1 227001361 227001380 CTTCCTGTAATTCCGAAGGG 58 226998671 227001318 AACCATCTGGGAGAACCTC 59 NA Rattus norvegicus 81 Olr1059 ENSRNOG00000032290 ENSRNOT00000044356 3 1 1 60 7 16364077 16364098 TGGGACTCAAACTTGATTTCTG 59 16364117 16364137 GAAGTGTCACATAGGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crtap ENSRNOG00000009878 ENSRNOT00000074238 1 1 1 80 8 122398415 122401658 ACTTCAAGGCCAATGACCT 59 122398353 122398371 TCATCATCTCGTCCTCAGG 58 NA Rattus norvegicus 81 Polr3c ENSRNOG00000033560 ENSRNOT00000028815 3 1 1 80 2 198843621 198843640 CAATGCTCCGAATGAGTGAG 59 198841791 198843582 ATCTGAAGATCTCATTGGAGGAC 60 NA Rattus norvegicus 81 LOC100912233 ENSRNOG00000048600 ENSRNOT00000043926 1 1 1 84 14 658742 659515 AATCAAGTCCTAGGGTGCC 59 658676 658696 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 1 2 2 80 10 88699368 88699465 CCACTTCAGAAACATGTCCC 59 88699307 88699326 GTGAACTTCTCTTCCGTGAC 59 NA Rattus norvegicus 81 Hmgb2l1 ENSRNOG00000033321 ENSRNOT00000046874 3 1 1 60 11 49708651 49708671 AGATACTGCAAAGAAACTGGG 58 49708611 49708630 CGGTTGTTTATCTTTGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.2 ENSRNOG00000057036 ENSRNOT00000089423 3 1 1 82 11 87296433 87296453 TTCATCTTTCACGGCTATGAC 59 87296497 87296939 TGTACTCGCAGTAGCACTG 60 NA Rattus norvegicus 81 Tmem204 ENSRNOG00000016494 ENSRNOT00000022142 3 1 1 82 10 14431955 14442190 ACCGTCAAACTACAGTTTGAC 59 14431893 14431911 ATGAAGGTGATCTGACCCA 58 NA Rattus norvegicus 81 Secisbp2l ENSRNOG00000008629 ENSRNOT00000011551 3 1 1 80 3 118019296 118020576 CTCCCAGGAAGATACTGGAC 59 118019235 118019257 GTCATACAGTATGGAGAGTTCTG 58 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 1 2 2 80 4 24633477 24637648 GGTTGTCAAGATGAACAAGAG 57 24637690 24637708 TCACCTTTAGGCTTTCCTG 57 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Rpf1 ENSRNOG00000015969 ENSRNOT00000021705 1 1 1 80 2 252379291 252380943 GCTCTTGGTGATAAGGCTC 58 252379229 252379247 GTCTACTGTGGTCTCATCG 57 NA Rattus norvegicus 81 Sectm1b ENSRNOG00000036673 ENSRNOT00000054932 3 1 1 91 10 110252810 110253057 ATAATAAAGAGTGGGACGAACC 58 110252740 110252758 GTTAGAGATGTTGCAGGCC 59 NA Rattus norvegicus 81 Rhobtb3 ENSRNOG00000012414 ENSRNOT00000016838 1 1 1 80 2 2665689 2665708 AACTGGGAGCTACCTATCTG 58 2661442 2665647 AATACTCCAACACTCCTCCA 58 NA Rattus norvegicus 81 Rab4a ENSRNOG00000017467 ENSRNOT00000049337 2 1 1 80 19 56610442 56611582 AATTGAATCAGGTGAGCTGGA 60 56611624 56611642 GACCGTAGCTGTCTCAAGG 60 NA Rattus norvegicus 81 Plekhh3 ENSRNOG00000020238 ENSRNOT00000027452 1 1 1 80 10 89077310 89077328 CTAATAGGCCCTCACACCT 58 89076829 89077266 CATGATCTCTTCCACCTGG 57 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 1 1 1 108 18 25370077 25370453 GTAAATGCCATGGGAAGCC 59 25369987 25370008 CATAGGAACATGTTGTGAAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Qdpr ENSRNOG00000003253 ENSRNOT00000004385 2 1 1 80 14 70169282 70170169 TGCCAAATCCAAGTCACTC 58 70170213 70170231 AAGTGGCTAGAGATGGTGG 59 NA Rattus norvegicus 81 LOC100910833 ENSRNOG00000006587 ENSRNOT00000009120 2 1 1 80 6 132068908 132068927 CCATCCATGATGTCTTCAGC 59 132035615 132068865 GAGGATGGGTCTGGATGAC 59 NA Rattus norvegicus 81 Atn1 ENSRNOG00000060594 ENSRNOT00000088895 3 1 1 88 4 157268127 157268145 CACTGGAACAGCAACAGTG 59 157267925 157268078 CTTCAGGTGACTGTAGTAGTCC 60 NA Rattus norvegicus 81 Hif1an ENSRNOG00000014234 ENSRNOT00000019070 2 1 1 83 1 264312463 264315090 GCATGGAAGGGAATGTGAC 59 264315136 264315155 AGATGCATCTCTTATGGCCT 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 3 1 4 80 4 163884672 163884691 GGATCGGATGTAAACAAGCA 58 163880783 163884631 GAAGGAACTTCAGTTCTTCCT 58 NA Rattus norvegicus 81 Gnmt ENSRNOG00000016349 ENSRNOT00000022307 3 1 1 80 9 16566990 16567008 GATGCTGAAATACGCACTG 57 16567052 16567626 TTGGCTTCTTCAATGACCC 58 NA Rattus norvegicus 81 Klhl35 ENSRNOG00000017365 ENSRNOT00000023386 2 1 1 81 1 164427550 164428117 ATGACATTTACGTTTCTGGAGG 59 164428158 164428177 ACCTTGATCCAGGTGTTCAG 60 NA Rattus norvegicus 81 Evpl ENSRNOG00000009343 ENSRNOT00000012373 2 1 1 80 10 105113482 105113591 TTGAGAAAGACATCAAGCAGC 59 105113422 105113443 GCACTATCTTCTCATACAGAGC 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000078822 2 1 2 108 18 25962966 25963096 TCCCTGAGGTCAAGAAACTC 59 25963167 25963185 ATGTGGACAAAGTTGGCTG 59 NA InUTR Rattus norvegicus 81 Klf9 ENSRNOG00000014215 ENSRNOT00000019367 3 1 1 152 1 240909486 240931712 GAGTGCATACAGGTGAACG 59 240931825 240931846 CACTCCTCATGAATCTCTTCTC 58 NA Rattus norvegicus 81 Olr109 ENSRNOG00000015919 ENSRNOT00000021304 1 1 1 80 1 168643819 168644026 CACATAACTATTCAACCACCTACC 59 168643762 168643783 TGGGATACAGAACCATATCTGC 60 NA Rattus norvegicus 81 LOC100912024 ENSRNOG00000032944 ENSRNOT00000046475 3 1 1 60 5 116973376 116973396 CACGACAATACAAGATCCCTG 59 116973414 116973436 TTCCTATCCTTTACGTCCTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452,ENSRNOT00000055318 1 2 2 80 2 252785133 252785154 GTGGTTTACCGAATTCCTACAG 59 252785194 252786942 GTCTTTACCACCAACTCCGA 60 NA Rattus norvegicus 81 P2ry6 ENSRNOG00000019270 ENSRNOT00000050227 3 1 1 114 1 165974712 165975733 TGAGACAGATTCTCCAAGCA 59 165974617 165974636 TGAAATCCTCACGGTAGACG 60 NA InUTR Rattus norvegicus 81 Cep19 ENSRNOG00000024924 ENSRNOT00000037795 2 1 1 80 11 71933153 71933175 GAGAATGAAGCTGAAGGAAAGAG 60 71922827 71933113 AGCTCTGGTGCAATCTGAG 60 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539 1 2 3 80 4 164449584 164449604 GCTCACTGTGATTGCTATTGG 60 164446015 164449543 ACACAACCACTGTTTGTCAC 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539 2 2 3 81 4 164449583 164449603 CTCACTGTGATTGCTATTGGA 58 164446013 164449541 CAACACAACCACTGTTTGTC 58 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539,ENSRNOT00000079975 1 3 3 66 4 164451264 164451282 CTGAGGAGACTCAAAGGCC 60 164449587 164449606 ATAGCAATCACAGTGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 2 2 2 85 7 49531791 49531809 GAAGTACCAGTGCACAAGC 59 49531855 49589071 ATGTATTGATACACCTCTCGGA 59 NA Rattus norvegicus 81 AABR07065789.1 ENSRNOG00000006333 ENSRNOT00000008333 3 1 1 60 6 141291313 141291333 GAACTTGCTATTTCTGATGGC 58 141291195 141291214 CTGTACCAACTGGATCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Lmf2 ENSRNOG00000030633 ENSRNOT00000049538 2 1 1 80 7 130322916 130322938 AGGAATTCTTCCCATCTGTATCC 60 130322764 130322882 GACTCTTATCCTTTAGTCCAAACTG 59 NA Rattus norvegicus 81 Cyb5d1 ENSRNOG00000045742 ENSRNOT00000074505 3 1 1 81 10 55997029 55997049 CTACTGTTGAAACCCATCCTG 59 55996841 55996986 GCTTGCGAATGTCTTTGGT 60 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888,ENSRNOT00000057095,ENSRNOT00000051385 2 3 3 80 5 134498862 134498882 CTCCTTAATGACCCTAGACAC 57 134498921 134499369 CTCTTGTAATTTCCATCCACCT 58 NA Rattus norvegicus 81 Tbc1d15 ENSRNOG00000003889 ENSRNOT00000067907 2 1 1 80 7 58168178 58172855 CTTCGATTATGGGAGGTAATGTG 59 58168120 58168141 TGATTCCAAGATAGCACAACAC 59 NA Rattus norvegicus 81 Tma7 ENSRNOG00000047225 ENSRNOT00000075819 2 1 1 104 8 117820068 117820088 GAAGATAAGGCTTTCAAGCAG 57 117816008 117820003 CTTAATTCCACCTGTAGCCA 57 NA Rattus norvegicus 81 LOC690460 ENSRNOG00000042797 ENSRNOT00000065418 2 1 1 60 20 11604817 11604837 TCCAGTGACTTGAGCTATGAC 60 11604859 11604877 CAGTGCAAGAGTCACAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000021946 1 1 3 84 17 9831363 9831509 CTGGAGAAACGGAGGAGAG 59 9831557 9831575 ATCGGGTATGGTCAACTCC 59 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 3 1 1 97 9 113728182 113728202 CTTTCTAGAAACCGTGAACCA 58 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000047766 3 1 2 82 1 86733176 86733194 GAAGAACCACTGCTTGCAG 60 86733104 86733132 GGGATATACTAGCAGGCAGAG 59 NA Rattus norvegicus 81 Dcaf10 ENSRNOG00000011655 ENSRNOT00000016384 2 1 1 80 5 60932653 60932672 CTGGTTCACCTTGTCATCAC 59 60932713 60932886 GTGAAACTCCTTCTCGTTGAG 59 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 1 2 2 82 1 98521275 98521376 GTTGGATGGGTCTCAAGGT 59 98521211 98521231 AGATACACAAACCCTCCTGTG 60 NA Rattus norvegicus 81 Oscar ENSRNOG00000055716 ENSRNOT00000090790 3 1 1 81 1 64187193 64187361 TCAGTTCCGAAGGTTCTGG 59 64187406 64187424 CAGATGAGGACCAGTCCTG 59 NA Rattus norvegicus 81 Hus1b ENSRNOG00000052502 ENSRNOT00000084871 2 1 1 60 17 34694059 34694078 CGTGAGTGTTTATCTGCCTG 59 34694101 34694119 ATTTGCCATCCTTTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404,ENSRNOT00000028854 1 2 2 80 3 123600989 123601012 AGGATACACAGAAACCTACTACAG 60 123600769 123600951 TGATAGTGGCAATGATCCGT 59 NA Rattus norvegicus 81 Bmpr1b ENSRNOG00000016289 ENSRNOT00000021963 2 1 1 80 2 247406303 247411440 GTGTTTCTGGAGGTATAGTGG 58 247406243 247406263 TCATGTCCTCATAAGAAGGGT 58 NA Rattus norvegicus 81 Tial1 ENSRNOG00000020271 ENSRNOT00000027463 1 1 1 80 1 199847491 199847513 GATGTAGTAAACCAGTCAAGTCC 59 199847323 199847453 CATAAGTTGATCTGTCAGCCC 59 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 3 2 2 82 1 105164874 105164892 CCACAAAGACAGCCATGTG 60 105188625 105188837 GAATACAACCCTGTTGTGACAG 60 NA Rattus norvegicus 81 Ecel1 ENSRNOG00000019447 ENSRNOT00000026387 2 1 1 80 9 94246916 94246935 TACATGATGGTCATGGTTGG 58 94246724 94246875 GTGGACCTCAAACTCATACTC 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 3 2 4 84 10 23664289 23664970 CAGCAATGGGATAAGGACC 58 23675997 23676016 TTGGCCTTCATACACTATGG 57 NA Rattus norvegicus 81 Rprd1a ENSRNOG00000016036 ENSRNOT00000021624 3 1 1 80 18 16474360 16474381 TATTATCCATTTGGGAAGAGCG 58 16474153 16474321 TCTTATCTCCATACAGAGCGT 58 NA Rattus norvegicus 81 Pdzk1ip1 ENSRNOG00000008161 ENSRNOT00000011434 2 1 1 191 5 133896293 133897980 TCAACAAGGTCTAGGGAACC 59 133899772 133899790 GAGTATCTGCCATCCATGC 58 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686,ENSRNOT00000050620 3 2 2 80 7 130018354 130020042 AGATAGGAGTGAGAGTTGGC 59 130020085 130020103 GGATAAGGCATTCTGGCTC 58 NA Rattus norvegicus 81 LOC100362620 ENSRNOG00000014130 ENSRNOT00000019234 2 1 1 81 17 13588743 13588761 GAAGAGGAGTGGAGGAGAC 59 13587973 13588698 GAATATGCGGTTCTGGCTC 59 NA Rattus norvegicus 81 AABR07044412.1 ENSRNOG00000061483 ENSRNOT00000082437 2 1 1 100 20 4957416 4957436 CTTCTTTAACCGCGACCTG 59 4957332 4957351 GTTCTTCCACTTTGTCACCC 59 NA Rattus norvegicus 81 Krtap27-1 ENSRNOG00000049035 ENSRNOT00000071257 1 1 1 60 11 28629663 28629682 CGACCTGCAAGTTACATGAC 59 28629622 28629644 GGGAACTTTCAAACACTGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glyatl2 ENSRNOG00000012387 ENSRNOT00000016593 2 1 1 80 1 229547293 229548599 CAGATCCAAAGTTCACAGGC 59 229548642 229548660 CTTATGCTTGACCTTGCCC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304,ENSRNOT00000081291 1 3 3 80 1 198316398 198316510 TCAAATGAGAAATGGCAGGA 58 198316337 198316357 CCGGTACTGAATGGTATTAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027593 3 2 3 93 10 15463701 15463876 ATGAAGATGTTGCAGGCAC 59 15463626 15463644 TCATGTAGCTGATGAGGGC 59 NA Rattus norvegicus 81 Tubg1 ENSRNOG00000020213 ENSRNOT00000027370 3 1 1 82 10 89033663 89034505 GCCTAGAGGGATTTGTACTG 58 89034550 89034568 ATTTAGCCGTTCCAAGAGG 58 NA Rattus norvegicus 81 Olr1063 ENSRNOG00000046346 ENSRNOT00000047647 1 1 1 60 7 9263108 9263127 ATCATTCTGTTGACTCTGCT 57 9263147 9263168 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083,ENSRNOT00000080303 2 2 2 80 5 90953997 90957139 AGACTAAGAACAATCAGTGGG 58 90957180 90957199 TCCTTTCTGGGACATTAGTG 57 NA Rattus norvegicus 81 Elovl5 ENSRNOG00000006331 ENSRNOT00000010409 2 1 1 80 8 85263851 85278866 TCTATGAGTTGGTGACAGGTG 60 85278907 85278926 TATCTGATTCTCCTGCGCTG 60 NA Rattus norvegicus 81 Wfdc18 ENSRNOG00000037097 ENSRNOT00000055923 3 1 1 66 10 71008759 71008781 GGGAATGAACATTACCTATGCTC 59 71009424 71009442 CTTGGGACACTTTCCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Il2 ENSRNOG00000017348 ENSRNOT00000023327 2 1 1 101 2 123851702 123851720 TTACAGGTGCTCCTGAGAG 58 123849149 123851552 TTTCAATTCTGTGGCCTGC 59 NA Rattus norvegicus 81 Fancc ENSRNOG00000016889 ENSRNOT00000022884 2 1 1 80 17 920150 920169 ACACTTGTCTTCACTTGTCC 58 917597 920108 TTGCATCAGAATCCATCTCC 58 NA Rattus norvegicus 81 Tmed11 ENSRNOG00000000035 ENSRNOT00000000040 3 1 1 83 14 1955552 1955571 CTGGTGAACACATCATTTGC 58 1955617 1956477 TATCTAAGTGGATGCGCAG 57 NA Rattus norvegicus 81 Nme5 ENSRNOG00000020118 ENSRNOT00000027244 2 1 1 81 18 27357953 27363666 ATCCTTACATCTGGCTTGC 58 27357890 27357911 TCTTCTGTTAGAGGGAAATGAG 57 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 3 1 1 61 5 58198210 58198230 CTCTAAGTCTGGGAAGAAAGG 58 58198086 58198187 AGTCTGTCTGTTCAGTCCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362150 ENSRNOG00000046854 ENSRNOT00000048400 1 1 1 60 4 102794191 102794211 GTTTCTTGGGTTCTTGTTGCT 60 102794343 102794362 CTGGGTCATCTGAATGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc94 ENSRNOG00000029606 ENSRNOT00000050775 2 1 1 166 16 22852230 22852248 CCAAAGAAGGCAAAGACGG 60 22851469 22852100 GACCTGTCACTGTCCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Hes3 ENSRNOG00000010893 ENSRNOT00000014536 3 1 1 84 5 169466245 169466340 TACTCCCACCAGATACGGA 59 169466179 169466197 AGTTCTGGAGGCTTCTCAC 59 NA Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 1 1 1 80 2 252005135 252007433 CGAAACCATTAAGCACTACCA 59 252007475 252007493 GGGAGGTCTTTGCATTCAG 59 NA Rattus norvegicus 81 Clec2e ENSRNOG00000052128 ENSRNOT00000077791 1 1 1 80 4 162855670 162855689 TCTGCTGCTATCGAGTAGTG 59 162853044 162855630 TTTCCTTTCTCACTGACAAAGC 60 NA Rattus norvegicus 81 RGD1561410 ENSRNOG00000023774 ENSRNOT00000051577 1 1 1 60 7 64293616 64293635 CAGAGAAGATTCCTCAGCAG 58 64293657 64293676 GCGTATTTGCAGGTAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6c ENSRNOG00000000843 ENSRNOT00000001119 1 1 1 80 20 5059368 5059728 GTGTACCTTGGGAAGATGTG 58 5059771 5059789 TTCATTGAAGACCTCCCGA 58 NA Rattus norvegicus 81 Olr569 ENSRNOG00000046501 ENSRNOT00000007665 2 1 1 60 3 75772041 75772060 AATGGTAGACGCTTTGACAC 59 75772083 75772101 ATTGGACCGACAGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3564 ENSRNOG00000046739 ENSRNOT00000072413 3 1 1 60 19 54632033 54632052 GTCTTCTGTATCCCTCAAGC 58 54632075 54632093 CCCTCTTTGCATTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2l2 ENSRNOG00000047546 ENSRNOT00000071218 2 1 1 80 10 70643028 70644031 CATCTTCATCCGGATCCTC 57 70642966 70642986 TTATCCAGATAATGACCCAGC 57 NA Rattus norvegicus 81 LOC102555083 ENSRNOG00000050661 ENSRNOT00000074262 3 1 1 82 7 117975595 117978078 GGAAGTGATCACTCAGAATGC 59 117975533 117975552 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Vom1r107 ENSRNOG00000042090 ENSRNOT00000065474 3 1 1 60 7 18068482 18068503 GATGCTTAAACACAGAGTCACC 60 18068521 18068542 CATAAGCCAGTTTAATGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr192 ENSRNOG00000017366 ENSRNOT00000023325 3 1 1 80 1 169991111 170005092 TAAGGTACTGCGTCCATGG 59 169991049 169991069 TGATGTCATCACAGGAGAGTC 59 NA Rattus norvegicus 81 AABR07009572.1 ENSRNOG00000013038 ENSRNOT00000049719 3 1 1 60 2 103750930 103750948 CCAGGAGAGCACAATTGGA 60 103750972 103750990 CCTTGTGTCATCTACGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc1a6 ENSRNOG00000007509 ENSRNOT00000009931 2 1 1 80 7 13731978 13735306 ATCACCACAATCAGCATCAC 59 13731917 13731935 CACCATGGTAACCAGTCCT 59 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083,ENSRNOT00000057872 2 2 2 80 20 27054536 27055183 AAGTGCACCATCTGTACCA 59 27055226 27055245 CGGATGTAATCGTCACTCAC 59 NA Rattus norvegicus 81 Pycrl ENSRNOG00000054724 ENSRNOT00000087328 2 1 1 86 7 116952150 116952415 TATGGAGGAGCTGTTACCC 58 116952082 116952101 ATAACCATAGCTCCCTCCTG 58 NA Rattus norvegicus 81 Ifi35 ENSRNOG00000020678 ENSRNOT00000028067 2 1 1 83 10 89365668 89365782 TGACCAACATCCAGGTGTC 60 89365829 89365847 CCTCACTCAGCCTAAGTCC 59 NA Rattus norvegicus 81 Dvl3 ENSRNOG00000001708 ENSRNOT00000002323 2 1 1 81 11 84059526 84059544 TTGGCTCCATCATGAAGGG 60 84059368 84059483 ATCTCATTTACCTGCAACAGC 59 NA Rattus norvegicus 81 Eif4a1 ENSRNOG00000030628 ENSRNOT00000049048 2 1 1 80 10 56275234 56275412 CGTCATCGAGAGTAACTGG 58 56275172 56275190 TAAATACCACGGAGGAGGG 58 NA Rattus norvegicus 81 Gxylt2 ENSRNOG00000005621 ENSRNOT00000007419 2 1 1 80 4 133244108 133247334 CCAGTTCAAGAACAGCCTG 59 133247373 133247396 GCATTCTTATACTTCTGGTACAGC 60 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294,ENSRNOT00000078846 2 2 2 81 7 117150460 117150546 CCCATGAGGAGAAGATCCA 58 117150397 117150416 CAATACTTGTGCAGCTTGAC 58 NA Rattus norvegicus 81 LOC100911247 ENSRNOG00000025487 ENSRNOT00000038294 1 1 1 60 7 60987595 60987613 AGACCTTCTACCTCACCCT 59 60987553 60987571 ACTTGTGAGAAACGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adm ENSRNOG00000027030 ENSRNOT00000036718 3 1 1 87 1 175445712 175445730 TGATGTTATTGGGTTCGCT 57 175445779 175445957 CACTTATTCCACTTCTTTCGG 57 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 1 2 2 80 2 22084639 22084660 ATTAGTCTTCTACCAGATGACG 57 22083267 22084598 TACTACAGGCACTGATCCA 57 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 2 2 2 80 5 131920215 131933400 AATACAGCAAACTCAGAGCT 57 131933442 131933461 GAGTTCTAAGTTTCCACCCA 57 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 3 1 18 65 1 43508705 43508723 AGTCCGTCAGAACACTAGG 59 43508750 43518467 TTCTGGTGGTTAGTTCGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000071463,ENSRNOT00000075728 2 3 3 85 2 235682173 235682801 GGCCTTCTATCATAGGCCC 59 235684906 235684924 CTTTGGTCCAGGAAGTCCA 59 NA Rattus norvegicus 81 Trappc6b ENSRNOG00000004103 ENSRNOT00000005568 3 1 1 82 6 80147647 80147668 CTTCAGGACAACAAATTTCGAC 59 80143555 80147605 AACGCTAGATACTTGGATGC 58 NA Rattus norvegicus 81 AABR07065782.1 ENSRNOG00000033376 ENSRNOT00000064361 1 1 1 60 6 141198538 141198556 CTGTTGGAATCTGGAGGAG 57 141198496 141198514 CTGCACAGGAAAGTCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep1 ENSRNOG00000008517 ENSRNOT00000011270 2 1 1 152 7 120068068 120068086 AGCTTTGATAGCACTCCGG 60 120069569 120069587 TCGGTCTTGAGAATGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tctn1 ENSRNOG00000028523 ENSRNOT00000030604 1 1 1 80 12 39791091 39791109 CTCCTAAACTGCTGCACCT 60 39791153 39791297 ATCCTCATTCGTCACCACC 60 NA Rattus norvegicus 81 Tmem138 ENSRNOG00000020693 ENSRNOT00000028092 3 1 1 80 1 226628530 226628548 GACCTGTTCGTCAATTCCT 58 226628237 226628489 AATATCCTGGATGATGAACAGC 58 NA Rattus norvegicus 81 Alox12b ENSRNOG00000022210 ENSRNOT00000039535 1 1 1 80 10 55745898 55745916 TACCACTTCCCAGCTTACC 59 55745959 55749554 ATCTGCTGTTGTCTTTCCTG 58 NA Rattus norvegicus 81 Glrx2 ENSRNOG00000003385 ENSRNOT00000060062 1 1 1 80 13 60536565 60536583 GTGGAGTTGGATATGGTGG 58 60536626 60537790 CCTGGGAACAGTTCTTTCTC 58 NA Rattus norvegicus 81 Slc25a48 ENSRNOG00000012040 ENSRNOT00000016138 1 1 1 80 17 8596527 8603489 TCTGGACACAGTCAAGACTC 59 8596466 8596484 CTCTTGTACACCATGCGGA 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000088284 2 1 2 110 16 3762776 3764793 TCACACCCAGAAAGCTCTC 59 3762095 3762115 GAATAATCCTCCTTCTCCGGG 60 NA InUTR Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 2 1 2 90 16 3759679 3761997 CTCTGAGTCTCAAATAATGACTTGG 60 3759613 3759632 CTCTTGGCTTTCTTCAGAGC 59 NA Rattus norvegicus 81 Itgb7 ENSRNOG00000012208 ENSRNOT00000016642 1 1 1 80 7 143827525 143827769 CGCAGAGTTTGACTATCCCT 60 143827464 143827484 GTGACAGCAAAGATAGGTTGG 59 NA Rattus norvegicus 81 LOC100910051 ENSRNOG00000047332 ENSRNOT00000071649 2 1 1 60 2 115207437 115207456 AACACCCATGTACTTCTTCC 58 115207479 115207497 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6d ENSRNOG00000000844 ENSRNOT00000001120 1 1 1 100 20 5064201 5064219 ATCACCTGTGGTGAAGGTG 60 5062036 5062054 TAGTGATGGCTCAAGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Crb1 ENSRNOG00000010903 ENSRNOT00000032122 2 1 1 80 13 56314152 56317176 AGGGTTTGAATGTATCGCCA 60 56314091 56314114 CTGGTAATATTCCCATTGCTTCTG 60 NA Rattus norvegicus 81 Nfil3 ENSRNOG00000011668 ENSRNOT00000015525 3 1 1 180 17 12261220 12274492 CTGGCAACCTTGGATAACC 59 12274636 12274654 CAGCTGCATCAGAAAGGAC 59 NA InUTR Rattus norvegicus 81 LOC100363136 ENSRNOG00000001570 ENSRNOT00000002137 2 1 1 60 11 28672597 28672615 GAGCTTCTACACTTCAGGG 57 28672555 28672574 ACGGACTCCATAACTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 ST7 ENSRNOG00000056243 ENSRNOT00000080880 1 1 1 80 4 45001312 45001330 TTCTTCCTCGTGCTCTTCC 59 45001374 45120590 AAACATGCTCACTGTGCTC 59 NA Rattus norvegicus 81 Rasd2 ENSRNOG00000014761 ENSRNOT00000020017 2 1 1 86 19 14658780 14658798 GTACCAGCTGGACATCCTG 60 14658847 14661588 ATGAAGACGTCTCCTGTGAG 59 NA Rattus norvegicus 81 LOC100363384 ENSRNOG00000001566 ENSRNOT00000002131 3 1 1 60 11 28870064 28870082 GCTATGGTACCAGCTATGG 57 28870022 28870040 AAAGAGGGACGGAAGTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm3b ENSRNOG00000050200 ENSRNOT00000070930 2 1 1 80 18 27595333 27597222 TGTCTATAAGTGAGACTGGTGAG 59 27597259 27597280 GTGGTGTCGAATTATCCATCAG 59 NA Rattus norvegicus 81 Bod1l1 ENSRNOG00000050437 ENSRNOT00000070998 3 1 1 80 14 73762128 73762147 AGTGCATAGCCAAAGTACTG 58 73762190 73762288 ACACTTATTTCCTGGGCTC 57 NA Rattus norvegicus 81 AABR07009931.1 ENSRNOG00000011640 ENSRNOT00000015479 2 1 1 60 2 117666628 117666648 AGGTAATGAGTGTGCTTATGG 58 117666588 117666606 GGCATCTGGCATTTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubp1 ENSRNOG00000009729 ENSRNOT00000013050 2 1 1 80 8 122229208 122229226 TGTGAATAACAGCCCTTCC 57 122229270 122231139 GAAGAATTGCTGTCTGGGA 58 NA Rattus norvegicus 81 Rgs2 ENSRNOG00000003687 ENSRNOT00000005156 1 1 1 83 13 60846999 60847017 TCACCACAGAAACTGTCCT 59 60846690 60846957 GTCTATGTTTATCTCTTTGGGAGC 59 NA Rattus norvegicus 81 Rbm33 ENSRNOG00000006718 ENSRNOT00000033377 2 1 1 80 4 606550 606568 TGACCAGTTTGACAAGCCT 60 606611 611548 TCTTCAAGTTCACTGTCCCA 59 NA Rattus norvegicus 81 Rpl27a ENSRNOG00000014214 ENSRNOT00000019247 1 1 1 101 1 174134114 174134132 ATTATGGACGTTGGTCAGC 58 174134196 174135119 ACTTTGTAGTAGCCTGATCG 57 NA Rattus norvegicus 81 Cyp4f6 ENSRNOG00000048450 ENSRNOT00000060210 2 1 1 80 7 14602678 14603656 TGAACATCATGCACATCCA 57 14603697 14603718 GATGGATATCTCGGAAAGTCTG 58 NA Rattus norvegicus 81 LOC100912418 ENSRNOG00000048642 ENSRNOT00000074198 3 1 1 60 4 170117285 170117303 GCAAAGGTCTGGGTAAAGG 59 170117243 170117263 TGGATGTTATCTCGGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 2 2 2 80 X 15451692 15451884 TTTGACCCTTCTTGTGGAC 58 15451928 15451946 GTTGGGATCATGTGGTGAG 58 NA Rattus norvegicus 81 Fkbp1b ENSRNOG00000047143 ENSRNOT00000071784 1 1 1 80 6 29981938 29985519 CTACACAGGGATGCTCCAG 60 29985560 29985581 TTGCCAATTCTGAACTTGAAGG 60 NA Rattus norvegicus 81 Rbpj ENSRNOG00000007797 ENSRNOT00000010277 2 1 1 87 5 4878667 4878685 GACTTGTGCATTGCCTCAG 60 4878734 4878756 CTCCTTCTACCAGGTATCTGG 59 NA Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 1 1 1 60 5 107416598 107416617 CCTCACACTCATAACCTCAG 58 107416557 107416575 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553002 ENSRNOG00000031459 ENSRNOT00000006118 3 1 1 87 1 65701531 65701549 CTGCAGTTATCTCCCAGCT 59 65694794 65701480 AGAATCCAACCTGGATGGC 60 NA Rattus norvegicus 81 Lcorl ENSRNOG00000003787 ENSRNOT00000072746 2 1 1 88 14 69818193 69819139 GCAGTCAGTGATTGTATGCC 59 69819190 69819208 TTATCAGTGTGGGACTGGC 59 NA Rattus norvegicus 81 Cnot4 ENSRNOG00000010795 ENSRNOT00000040969 2 1 1 80 4 62591369 62592778 CTTCACATCAGAAACAATCCC 57 62591309 62591328 TCTGGCTGTTTAGAAGAACC 58 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 1 2 2 80 12 40520679 40520699 GTTTGCTAAAGTTGACCAAGG 58 40520741 40521525 TGTGCTTCCAGTACCTGAG 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 2 2 2 80 12 40520681 40520701 TTGCTAAAGTTGACCAAGGTG 59 40520743 40521527 TCTGTGCTTCCAGTACCTG 59 NA Rattus norvegicus 81 Klk11 ENSRNOG00000018742 ENSRNOT00000025055 1 1 1 81 1 99712269 99713918 AATTATCTACAGAACCCAGGGA 59 99713960 99713978 GCAAGTGCAATGAATCGGA 59 NA Rattus norvegicus 81 Slc2a13 ENSRNOG00000015741 ENSRNOT00000021153 2 1 1 80 7 132681564 132681584 CATTGACGAGGAGTATGACAG 58 132581215 132681523 CAGATTATAGGTCCAGCTGC 58 NA Rattus norvegicus 81 Cyp4b1 ENSRNOG00000055078 ENSRNOT00000013321 3 1 1 80 5 134514946 134514965 TCATTTACTGGCTCACTCCA 59 134514753 134514905 TGATGACCTCATCTGTATGGT 58 NA Rattus norvegicus 81 Dgcr6 ENSRNOG00000001880 ENSRNOT00000002574 2 1 1 87 11 87080937 87080955 CTTCTGGAGATCCAGCACC 60 87078096 87080887 GAGTCTGTCTGAGCACTCTG 60 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000002656,ENSRNOT00000007876 3 2 2 60 9 17212365 17212384 TGCCCATTAAGGAGTCTGAG 59 17212324 17212345 ACTTCATCCTTTAGAGATGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drgx ENSRNOG00000020045 ENSRNOT00000027186 2 1 1 80 16 8829547 8829566 TACCCAGATGTCTTCACCAG 59 8829609 8832367 GTTCTGGAACCAAACCTGC 59 NA Rattus norvegicus 81 Kif22 ENSRNOG00000020281 ENSRNOT00000027525 2 1 1 80 1 198466963 198467056 TTGGTCAAGGTAGAACAGC 57 198466901 198466920 ACCAGCCAAATCAATAAGGT 58 NA Rattus norvegicus 81 Fam71b ENSRNOG00000021425 ENSRNOT00000031580 1 1 1 80 10 31509161 31509181 TGAACAGTTGCATCAGTAACC 59 31509222 31510349 GGATTTCTGAGACGAGTGTG 58 NA Rattus norvegicus 81 U8 ENSRNOG00000056054 ENSRNOT00000083120 1 1 1 60 10 55656480 55656499 CTGCTGATTAGCATTTCCGT 59 55656520 55656540 ATCAGATAGGAGCAATCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 2 2 2 121 18 64015931 64015949 CACGTTCCTTCATCAACCG 59 64033404 64040276 ACACATGATCTCTGAAGCCC 60 NA Rattus norvegicus 81 RGD1307916 ENSRNOG00000042494 ENSRNOT00000064853 1 1 1 95 4 156944580 156944598 CAGATGCCGATGTTCTCTG 58 156824501 156944521 TGAAGGAGACTTCTTGCCC 59 NA Rattus norvegicus 81 Slc28a3 ENSRNOG00000018853 ENSRNOT00000025745 3 1 1 80 17 6489705 6492118 CCGACCAGAGTTTACTGGA 59 6492158 6492180 CCTAGTCCTTAGAATTAAGAGCC 58 NA Rattus norvegicus 81 RGD1566099 ENSRNOG00000043374 ENSRNOT00000066601 3 1 1 80 13 55883300 55883318 TGGCTATGTGGTTCTCACC 59 55881719 55883257 CCATATGGACAGTGTCTGCA 60 NA Rattus norvegicus 81 Figla ENSRNOG00000015877 ENSRNOT00000021272 2 1 1 81 4 117681078 117681097 TATCCTTAAAGGTGCCACGG 60 117681141 117683204 AGGGCCTTGTTTCTCTGAG 59 NA Rattus norvegicus 81 Thap7 ENSRNOG00000037967 ENSRNOT00000057751 2 1 1 102 11 87400556 87401711 GGGAATCAGTGGGTATCAC 57 87400472 87400490 ATAACCATGCACCTTGGTC 58 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 3 1 1 80 11 61512198 61513915 ACATCTATCTGCATGTCCAG 57 61512137 61512158 TAGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Luc7l ENSRNOG00000020488 ENSRNOT00000060078 3 1 1 81 10 15555423 15561808 AAGAAGCAGAGGAAGAATACAG 58 15561850 15561868 GAACAAACCTCGCAAACAC 58 NA Rattus norvegicus 81 Nup210 ENSRNOG00000005390 ENSRNOT00000008888 3 1 1 80 4 122726953 122729456 GCAGAAGACATCACTACAGG 58 122726892 122726912 GGTAGAGACAATCTGAATGCC 59 NA Rattus norvegicus 81 Rpl6 ENSRNOG00000025936 ENSRNOT00000034951 1 1 1 81 12 40880915 40880933 CAGGTATTCCCGATCTGCT 59 40880757 40880872 CTTCTCAACCTTTGTCTTGGC 60 NA Rattus norvegicus 81 AABR07021086.1 ENSRNOG00000022174 ENSRNOT00000032908 1 1 1 80 13 56262895 56262914 GTATCCATTGTGGATCTGGC 59 56262957 56262989 TTTAGTAGGCCCTACCACC 58 NA Rattus norvegicus 81 Tmem109 ENSRNOG00000028017 ENSRNOT00000038807 1 1 1 86 1 226927092 226927110 TCATCAGCCATCTCTGTGG 59 226926585 226927042 GAGTTGTTCACCATCCAGC 59 NA Rattus norvegicus 81 Mt1 ENSRNOG00000025764 ENSRNOT00000038212 1 1 1 80 19 11302283 11302301 GCAAGAAGCAGGTCTTCTG 59 11302220 11302245 GAAAGAAAGAAGAGGAAGATGTCAG 60 NA Rattus norvegicus 81 Trim68 ENSRNOG00000047229 ENSRNOT00000075222 1 1 1 80 1 167837165 167837639 ATGATGCAGGGTATTCAGGA 59 167836584 167836602 CAGCTCCAAGGAGATTGGT 59 NA Rattus norvegicus 81 Ms4a2 ENSRNOG00000020993 ENSRNOT00000028491 2 1 1 80 1 227960129 227960479 TCTTTCATCACAGAACTGGTG 58 227960069 227960088 ATAGATAATGAGCAGCACGG 58 NA Rattus norvegicus 81 Ptprn2 ENSRNOG00000005003 ENSRNOT00000006942 2 1 1 80 6 144740837 144740856 TGATCTTCAAAGTGAGTGCC 58 144740897 144878102 GCTCATCTTTGTTGTCAACTG 58 NA Rattus norvegicus 81 Tmem116 ENSRNOG00000027480 ENSRNOT00000067503 2 1 1 80 12 40586376 40588933 AGTCTGCAGAGGTAAAGTCAC 60 40586316 40586335 CAAGTGCCTTTATGAGCCAG 59 NA Rattus norvegicus 81 AABR07046635.1 ENSRNOG00000047780 ENSRNOT00000033772 3 1 1 105 5 230929 230947 TTCACTCAGGAAGAGTGGG 59 231012 231232 CCCAATTGTAACCTATAGCAGTG 59 NA Rattus norvegicus 81 Tcte1 ENSRNOG00000019961 ENSRNOT00000027031 3 1 1 80 9 17855638 17855657 CTCTTTCTCTTCACCTACCG 58 17851207 17855598 CAGTCTGAAGATCTTGAGAGTG 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069,ENSRNOT00000044885 1 2 2 83 3 15366353 15366372 GGCAAAGTTTGACGAATGTG 59 15363190 15366309 TTCACTTTGGTGACCTTAGAC 58 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 2 2 2 264 4 7259226 7259517 AAAGAACCCAGTTTCCAGG 58 7259745 7259763 TACTGGATCTGGCAGTACC 58 NA DesignNoJunction Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 1 2 2 84 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989038 22992503 CTCAGTGGTCTCTTCCTGG 59 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 2 2 2 85 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989037 22992502 CCTCAGTGGTCTCTTCCTG 59 NA Rattus norvegicus 81 Lrrc8d ENSRNOG00000002121 ENSRNOT00000002888 1 1 1 96 14 5089015 5101011 GATCATGGGAATGTTTACCCT 58 5088939 5088957 ATCCATAAACACGTCCCAC 58 NA InUTR Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 1 2 2 83 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 RGD1311703 ENSRNOG00000053659 ENSRNOT00000090773 2 1 1 81 1 185563538 185568983 ACGACGATCTTGGATCTAGC 60 185563476 185563498 CCCATAAGTCTCAAGAACTTCTG 59 NA Rattus norvegicus 81 AABR07071393.1 ENSRNOG00000046440 ENSRNOT00000072842 2 1 1 60 8 113704437 113704455 GATCTGGGAGCATCTGGAG 59 113704395 113704415 CTGGTCAACTTCAAAGCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Porf1 ENSRNOG00000003891 ENSRNOT00000005162 2 1 1 60 6 114476650 114476668 GGGATTTGCTGATGTACCA 58 114476608 114476627 CCAGGTTGATCCTCTTACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crebbp ENSRNOG00000005330 ENSRNOT00000007079 3 1 1 80 10 11714730 11714750 CTTTGTCTATACCTGCAACGA 58 11714790 11716148 CAAAGGTCATAGTCCTCACAC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 1 2 2 80 7 70337182 70337200 AAAGGTGTCTGTCCAGTCC 59 70337243 70337512 GAGAGCGTATTGGATACCGT 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163,ENSRNOT00000083811 2 5 6 80 9 17347358 17348155 ACTATGCAGATCATGCGGA 59 17348199 17348217 TTCACATCTGCTATGCTGC 58 NA Rattus norvegicus 81 Kcnj3 ENSRNOG00000005369 ENSRNOT00000007335 1 1 1 91 3 41020579 41020597 ACTCACTCTCATGTTCCGG 59 41020652 41029577 GTGTCTGCCGAGATTTGAG 59 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 1 1 1 80 X 156414534 156414554 GCTTTCTACCTACTTAGACCC 57 156412471 156414493 TCAATGCTTAGCTTGTCCTG 58 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491,ENSRNOT00000056724 1 2 2 80 9 97274495 97284143 GTATTCCTGGGTATGAAACCAC 59 97274436 97274457 CAGATTTGACACTTGTTCTGAC 58 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482,ENSRNOT00000002477,ENSRNOT00000002478 2 3 3 80 11 88870130 88870340 TTAGAAATGCTACTGGCCC 57 88870383 88870402 GCTTAATCTGACGTTTGACC 57 NA Rattus norvegicus 81 Cd2 ENSRNOG00000015821 ENSRNOT00000021268 2 1 1 80 2 203674507 203679562 GGACTTGAGGATTCTAGAGATGG 60 203674449 203674467 AAGACTTCACAGGTCAGGG 59 NA Rattus norvegicus 81 LOC100912195 ENSRNOG00000033844 ENSRNOT00000048996 2 1 1 110 1 116566378 116566715 ATAGGCCCAGGAGAAATGG 59 116566286 116566304 TTTGATGGTATCTTGCGGC 59 NA InUTR Rattus norvegicus 81 LOC689600 ENSRNOG00000057651 ENSRNOT00000084905 2 1 1 96 X 153456904 153456922 CAGGAATTTCACACGGCTG 60 153456676 153456848 CTGGTTTCTTAGTTACCTTGACC 59 NA Rattus norvegicus 81 Zscan18 ENSRNOG00000026861 ENSRNOT00000036880 3 1 1 80 1 65852200 65852219 CCTGAGAATTGCAAGAAAGC 58 65852261 65852820 GGAACACAACATCATTCCTG 57 NA Rattus norvegicus 81 Fam171a2 ENSRNOG00000021041 ENSRNOT00000028563 2 1 1 87 10 90385255 90385788 ATCTACTACTGCCGACGAC 59 90385186 90385204 GATCTCGTTTGTTGTCCGA 58 NA Rattus norvegicus 81 Styk1 ENSRNOG00000010347 ENSRNOT00000013833 1 1 1 80 4 165530490 165530509 CCAGCATCCTACAGTATCTG 57 165529485 165530448 TCATGATGTTGTACATGGCA 58 NA Rattus norvegicus 81 Gripap1 ENSRNOG00000009071 ENSRNOT00000012646 1 1 1 80 X 15534120 15534138 GCTTCGAGAACTGCATGAG 59 15533920 15534076 CTTGTTCGAGCCTTCTCCT 59 NA Rattus norvegicus 81 Lrrc75a ENSRNOG00000027286 ENSRNOT00000030379 1 1 1 69 10 48933952 48933970 TTCACAGTGGAGGAGACAC 59 48930920 48930938 AGAAAGGAGGGCCTTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Bcl7c ENSRNOG00000018916 ENSRNOT00000025618 2 1 1 123 1 199157655 199157772 CTGGATCTCAATGATGAGAACAG 59 199157554 199157572 GAGGTCCAGTTGGTGATCC 60 NA Rattus norvegicus 81 Ciapin1 ENSRNOG00000016234 ENSRNOT00000021769 3 1 1 80 19 10605825 10605843 TTGTGGATCCTGCTACTGC 60 10605885 10607537 CTGAGTCAATGAGATCCATGC 59 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 2 1 1 64 7 5655690 5657533 GATGACCAACAACTGCAGG 59 5657559 5657579 GTTATGCTCAGTGAGTAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tfe3 ENSRNOG00000009605 ENSRNOT00000012829 1 1 1 80 X 15583041 15583586 GGTACTCAAGGTTCAAACCC 59 15582980 15582998 TACTGTTTCACCTGTTGCC 58 NA Rattus norvegicus 81 Hoxc13 ENSRNOG00000028679 ENSRNOT00000033300 2 1 1 81 7 144532478 144532496 ACAGTCAGGTGTACTGCTC 59 144532541 144537725 TGTAGAGGAACCACGTCTG 59 NA Rattus norvegicus 81 LOC680039 ENSRNOG00000027623 ENSRNOT00000029191 1 1 1 80 14 79313078 79313096 TTGCAAAGCAGGTTGTCAG 59 79313137 79318386 TTCAGTACAGGAAACTCTTCCA 59 NA Rattus norvegicus 81 Fam216a ENSRNOG00000031731 ENSRNOT00000050398 2 1 1 80 12 39687177 39688493 TTGCTACCAGTTTCTTCTAAGG 58 39688531 39688552 CATGCACTCATTCAGTAGATCC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 2 2 2 80 8 19888838 19888858 CACCTAGAGCAAGAAGAGGAG 60 19888897 19890698 AGATGTAGTTTCCCAATCTGGA 59 NA Rattus norvegicus 81 Ccl22 ENSRNOG00000016535 ENSRNOT00000022167 1 1 1 60 19 10681072 10681090 TCTCGTCCTTCTTGCTGTG 60 10679886 10679904 CACATTGGCACCATAGGGA 60 NA DesignNoJunction Rattus norvegicus 81 Ddx54 ENSRNOG00000001377 ENSRNOT00000001859 1 1 1 80 12 41477765 41477889 AATGAACAGCTCAAGACTTCC 59 41477705 41477725 GACATTCTGTAGCAGGTAGAG 58 NA Rattus norvegicus 81 Mybl1 ENSRNOG00000021669 ENSRNOT00000067977 3 1 1 80 5 9303060 9304177 CTTATTGAATCGGATCCTGTAGC 59 9304217 9304235 AGACTTGACAGGAGAAGCA 58 NA Rattus norvegicus 81 Rpl10l ENSRNOG00000032720 ENSRNOT00000047597 1 1 1 60 6 88232146 88232164 AGATCCGCATCTTTGACCT 59 88232104 88232122 CCACAGAGTGGAAACTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan5 ENSRNOG00000015913 ENSRNOT00000021381 1 1 1 84 2 244213858 244216064 AGGAATACTGGCAGTGCTG 60 244216112 244216130 CTTGCATTGGAGTCTGTGC 60 NA Rattus norvegicus 81 Lrrfip2 ENSRNOG00000021047 ENSRNOT00000056060 3 1 1 80 8 119481004 119482105 ACCTTGGAACAAAGTATCAGC 59 119482145 119482165 TTCAATCTTCTCAGCGTTCTC 59 NA Rattus norvegicus 81 Dlk2 ENSRNOG00000018949 ENSRNOT00000025638 3 1 1 95 9 17062804 17063358 GTTCTGTGACAAAGATGAGCA 59 17062729 17062747 ACACAGTGGTACTCACCAC 59 NA Rattus norvegicus 81 Adra1d ENSRNOG00000021256 ENSRNOT00000028877 2 1 1 196 3 124144127 124144145 GAACACAGAGTAGCAAGGG 58 124130887 124130905 CTTGAAGACACCCTCTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 2 2 2 85 17 31442646 31442665 GGAAGTTACCATGGAGACAG 58 31442710 31442965 CGAGGCACATATTTATTACCAG 57 NA Rattus norvegicus 81 Itgb1 ENSRNOG00000010966 ENSRNOT00000014785 3 1 1 80 19 61716888 61716907 ACTGCTGGTTCTATTTCACC 58 61716950 61718273 TAGGACAGTCTGGAGTCTC 57 NA Rattus norvegicus 81 Rn60_1_1348.1 ENSRNOG00000051253 ENSRNOT00000075872 3 1 1 86 1 133713445 133714454 AATCTAAAGGCTACAACAGCTG 59 133713380 133713398 TGGTAGGCACAGTGATGTG 60 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126,ENSRNOT00000014034 3 2 2 81 2 263896109 263940271 CCGCTATTGATAATGATGCTG 57 263940314 263940332 CCTTCTCCTTTCCCATCTG 57 NA Rattus norvegicus 81 Sh2b3 ENSRNOG00000028198 ENSRNOT00000030583 2 1 1 130 12 40262085 40262181 CTTTGTGTTGAAGGTGCAG 58 40262350 40262368 GTAACTCTGTGTCCAGGTG 58 NA Rattus norvegicus 81 Olr1012 ENSRNOG00000054207 ENSRNOT00000074567 2 1 1 60 7 7069466 7069486 TCATGTATGCTAACCCTTCTG 58 7069506 7069526 AGAATAGCTACTCCTTTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6324 ENSRNOG00000046478 ENSRNOT00000075626 2 1 1 60 11 36383573 36383592 ATCCAACTGAGTCAGTAGGC 59 36383532 36383551 GTCAGTGAAATTGCTCAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000016967,ENSRNOT00000066780 2 3 3 80 2 257472569 257472587 CATGCTCGCTTCTGATGAG 59 257472265 257472526 CCTTTAACTGTCCCTGTGAG 58 NA Rattus norvegicus 81 Arhgef25 ENSRNOG00000005034 ENSRNOT00000006800 3 1 1 80 7 70472735 70472754 GGAAACTTTGTCTCAAGCTC 57 70472514 70472694 TCACTCAGGACAAACATACTC 58 NA Rattus norvegicus 81 Sav1 ENSRNOG00000005264 ENSRNOT00000007314 3 1 1 95 6 92377380 92380193 CCCTGTGAAATACGACCAC 58 92377303 92377321 TCCTTCATGAAGAGCAGCT 59 NA Rattus norvegicus 81 Tesk1 ENSRNOG00000053729 ENSRNOT00000080909 3 1 1 80 5 58940938 58941078 CCGTACTGAGGACTTTGGT 59 58941122 58941140 AGAAGCAGGAAAGGTAGCG 60 NA Rattus norvegicus 81 Gpd1 ENSRNOG00000056457 ENSRNOT00000087662 1 1 1 81 7 141373340 141373358 ATGCAAACACCCAACTTCC 59 141373401 141374714 CCACTATATTCTTCAAGGCCC 58 NA Rattus norvegicus 81 AABR07033162.1 ENSRNOG00000030674 ENSRNOT00000052022 3 1 1 80 11 8268905 8268924 CAGTACCAGAAGAGGGTCAC 60 8268969 8268987 CTGTTCTTTCCTGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362040 ENSRNOG00000030738 ENSRNOT00000042161 1 1 1 80 9 100699057 100699384 ATACAGAAGTCAGTAAAGGCTAGAG 60 100699001 100699021 TCTACCTACTCCCACTCTCAG 60 NA Rattus norvegicus 81 LOC100362040 ENSRNOG00000030738 ENSRNOT00000042161 3 1 1 80 9 100674279 100675068 AAAGATCCTAGAGGTAACCTTGG 59 100674221 100674239 GAATGGGCTGGGAATTGAG 59 NA Rattus norvegicus 81 Kdm2b ENSRNOG00000025702 ENSRNOT00000044071 1 1 1 80 12 39153511 39153529 AGTCCATCAACCTGCTCAC 60 39153571 39160710 CCTTATTGCAGTCCGATAGGT 60 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000086950,ENSRNOT00000077082 3 2 3 99 20 5080207 5080225 CAAGATCTACCGGGAGAGG 59 5080288 5081178 ATACGAATCCCAGGAGCTG 59 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 1 3 3 80 8 111078410 111079530 ACTCAGTAGAAAGGTCTCTGG 59 111078350 111078369 GCACATTATCCAAGACTCCC 59 NA Rattus norvegicus 81 Ssr4 ENSRNOG00000053172 ENSRNOT00000083557 2 1 1 80 X 156997792 156997811 AGATGCCGTCATTTCTACAG 58 156996749 156997749 AGAGCCATATTCTGGACCC 59 NA Rattus norvegicus 81 Tada3 ENSRNOG00000008597 ENSRNOT00000011827 1 1 1 80 4 145322956 145322976 CATGTCTGGGAAAGAATCAGG 59 145322399 145322915 GTATGTGGCACACTGAAAGG 59 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 2 2 2 83 4 33929642 33929660 ACATTCAGACGACAGTGGA 59 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 AABR07036374.1 ENSRNOG00000001347 ENSRNOT00000001818 1 1 1 128 12 40535054 40535072 AGGATGTCCTCCTGTTTGC 60 40535162 40535216 TCTTACTGATCGTCTCATGCA 59 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 3 1 1 80 6 1352515 1352534 TCCTAGTCAACTGTACCGAG 58 1345859 1352472 ACCACATATACCTCTGCCC 59 NA Rattus norvegicus 81 Efna5 ENSRNOG00000034177 ENSRNOT00000045096 3 1 1 80 9 110062704 110062725 ACTATAGGTGTTCATGATCGTG 58 110057260 110062663 ATGTACGGTGTCATCTGCT 59 NA Rattus norvegicus 81 Zfp951 ENSRNOG00000043048 ENSRNOT00000044065 3 1 1 81 14 6284039 6284058 CTGGATCCTTCCCAGAAGAG 59 6283780 6283996 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 2 1 1 80 1 126588328 126588346 TGCCTCCTGTACTTATGGG 59 126588390 126591517 TGGAGGTCTTGATCGACAC 59 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755,ENSRNOT00000077715 1 2 2 80 6 98462210 98462231 TAGTGACAGCAATGAATTCGAC 59 98454369 98462172 TCATATACAAGCTGTAGGTGGG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 3 3 7 80 19 15166510 15166528 AAGAGCTCTTGGAGACCAC 59 15168576 15170417 CAAACGGATAGCTCTGCCT 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024622 1 1 7 80 19 15309151 15309170 CATTTCTGAGAGTGGTGTGG 59 15309211 15310320 AGAGTAGCAATCATTTGAGCC 59 NA Rattus norvegicus 81 Sbspon ENSRNOG00000007258 ENSRNOT00000009530 3 1 1 80 5 2835815 2835834 TGCCTTCAACAAGAAGAGGA 59 2835875 2837479 TCCATACAGTATCCAGCATCC 59 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 1 2 2 80 10 110905682 110906719 CAGTGACTTTGTTGTCCGAG 59 110906762 110906780 ACCCGTAGGTGAATGACTG 59 NA Rattus norvegicus 81 AABR07065778.2 ENSRNOG00000047308 ENSRNOT00000074472 1 1 1 60 6 141008186 141008204 CCAAGAACACCCTGTACCT 59 141008144 141008163 AAATAAGTGGCAGTGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctla2a ENSRNOG00000039971 ENSRNOT00000061422 3 1 1 80 17 4170818 4170943 GTGACTTGACTACAGAAGAATTCAG 60 4170981 4170999 TGGGCAAATCATGAGTCGT 60 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 2 1 1 80 12 42345132 42349221 ATGTCCTAGGTCATGTAAGCA 59 42349263 42349281 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 1 1 1 80 6 143065504 143065605 CAGTAACTGCAGGAGTCCA 59 143065442 143065460 TCTTCACTGAAGAGCCAGG 59 NA Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 3 1 1 80 6 143065501 143065602 TAACTGCAGGAGTCCACTC 59 143065439 143065459 AAATCTTCACTGAAGAGCCAG 58 NA Rattus norvegicus 81 Rab40c ENSRNOG00000020067 ENSRNOT00000027266 3 1 1 82 10 15282813 15282832 AAAGGCGAGATTCTGGAGAG 60 15257865 15282774 GTAGTCTTATAGTCTATTCCGTTGC 59 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 3 2 2 81 8 56198608 56198626 AGCAGAAAGGAGGAGAAGC 59 56198671 56224738 AGAATGGCTGTCTCTGGTG 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 1 2 2 80 7 130334180 130334200 TTCTTTAGTGCAGGAAGATGG 58 130334241 130334339 AGTGACAGGAACTCATCCTC 59 NA Rattus norvegicus 81 Pcgf3 ENSRNOG00000000062 ENSRNOT00000000071 2 1 1 80 14 2283258 2283277 GGAGAACAATACCTGTCCCA 59 2280245 2283215 ATGGTTCTGTCATGACCGA 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000090638,ENSRNOT00000047472 1 3 6 80 1 41725997 41726442 TGTCATCACAGAGTGGAGG 59 41725935 41725953 TTGAAGTGGCTGAGACTCC 59 NA Rattus norvegicus 81 Dnajc10 ENSRNOG00000006803 ENSRNOT00000009839 3 1 1 80 3 67572195 67572216 TTGATTTCTATGCTCCTTGGTG 59 67572256 67573340 TCCCTTTGATCATCCTAGCC 59 NA Rattus norvegicus 81 Ahnak2 ENSRNOG00000028545 ENSRNOT00000039631 2 1 1 60 6 137339617 137339635 GAAGGGTATGTCGTGTTGG 58 137339575 137339593 GCATCTTGAACTTGCTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637,ENSRNOT00000036148 1 2 2 80 5 149961102 149961123 GACATGATCTTTCTCAAGTGGG 59 149960782 149961063 AATGCTTTGGTAGCTGATCTC 59 NA Rattus norvegicus 81 Tpgs1 ENSRNOG00000008296 ENSRNOT00000011010 1 1 1 68 7 12917635 12917653 CAATTTCCCAGACAGTGGC 59 12917585 12917603 AAATCCTCCTCGCTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359978 ENSRNOG00000029776 ENSRNOT00000044381 3 1 1 60 6 142992937 142992955 CTGAATAGTCGGCTCACAG 58 142992895 142992914 TGATCTTCAGGAATGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trhde ENSRNOG00000005278 ENSRNOT00000007461 2 1 1 80 7 57341334 57341354 ACTTCAGAGTCAACTATGACC 57 57341163 57341293 TGACAGAAAGTACCTCATGG 57 NA Rattus norvegicus 81 Sh3tc1 ENSRNOG00000007993 ENSRNOT00000010784 2 1 1 81 14 80204993 80205343 CCCGAGTACTTGGAGAACTG 60 80205385 80205405 AAAGTCTTAAACGTCACCACG 59 NA Rattus norvegicus 81 Strap ENSRNOG00000007134 ENSRNOT00000009923 1 1 1 80 4 171734424 171734443 ATTACCTGTTGACTGGAGGA 58 171734485 171736059 TAATTTCCTTGGGTTCTGCT 57 NA Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 3 1 1 80 16 17642157 17642176 GGAAAGTGGAGATGGAGGAC 60 17642215 17658000 CTTCCTCTTTCCTCTTGAATTCC 59 NA Rattus norvegicus 81 Testin ENSRNOG00000018028 ENSRNOT00000024467 1 1 1 82 17 4223842 4224486 CGGTAGTGGCATCTATTATGAG 58 4224529 4224547 CTTCAAAGCCATAGCCGAC 59 NA Rattus norvegicus 81 Sult6b1 ENSRNOG00000049335 ENSRNOT00000075000 2 1 1 80 6 1480875 1480895 CAAGAATTCTGACAACTCACC 57 1477754 1480834 ACATCACCAATATCTTGGCT 57 NA Rattus norvegicus 81 Tom1 ENSRNOG00000014093 ENSRNOT00000018880 2 1 1 80 19 14410731 14413481 AACTCCTGAGCAGATTGGG 59 14413524 14413543 GTCAGCATCTCTGACATCAC 59 NA Rattus norvegicus 81 Alg10 ENSRNOG00000014511 ENSRNOT00000019672 2 1 1 80 7 131332678 131332696 TCTTCTCTTCAGTGTTGGC 57 131332738 131334289 CTTGAAGAAGCCTTGTTTCTG 58 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 2 1 1 97 5 38922698 38922739 AATTTGGGCAGGTTCAGTC 58 38922619 38922637 GTTCAATCAGAGCCACTGC 59 NA DesignNoJunction Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635,ENSRNOT00000015067 2 2 2 84 2 140316009 140322475 AAAGAAGAAAGTTGGCCGT 58 140315943 140315961 GGCTTTCTTCTTGACTCCT 57 NA Rattus norvegicus 81 Fbl ENSRNOG00000019229 ENSRNOT00000026021 2 1 1 80 1 85110543 85110565 GAAGAGGACCAACATTATTCCTG 59 85110603 85111572 ACATCCACCATTGCAATAAGC 60 NA Rattus norvegicus 81 Mff ENSRNOG00000048016 ENSRNOT00000020712,ENSRNOT00000089451 2 2 2 86 9 88496647 88501536 CAAAGCGAAGAGATCCGAG 58 88501586 88501604 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Ces5a ENSRNOG00000025710 ENSRNOT00000049452 2 1 1 80 19 12126985 12133552 GAAATCACAGAGATCGCTGG 59 12133596 12133614 AAGCTGGCTTTGTGTTCTG 59 NA Rattus norvegicus 81 Zfp53 ENSRNOG00000042347 ENSRNOT00000015343 1 1 1 255 1 61375989 61376008 TCAGAGGGTTCATACTGGAG 58 61377453 61377477 GGTATACTTTAGCATGGTTTCTCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lysmd2 ENSRNOG00000010642 ENSRNOT00000014301,ENSRNOT00000083410 3 2 2 86 8 82574859 82576117 AGAAGAGAACAGGGATGAAGAG 59 82576164 82576182 TCTGTGATCTGGCTCAGTC 59 NA InUTR Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 1 1 1 60 10 55998317 55998338 GATCGTGACTGTAATGTCATCC 59 55998358 55998536 ATGAATCAGAAGGCTTGAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100360411 ENSRNOG00000039601 ENSRNOT00000060703 2 1 1 96 16 15106093 15106112 TACAGCCGTGGTTCTACAC 59 15106015 15106034 AAAGAGTGTATGCCCAGTCC 60 NA Rattus norvegicus 81 Rbm25 ENSRNOG00000002874 ENSRNOT00000003834 3 1 1 80 6 107156302 107156321 GAACTTGAGGAAATCAGGCA 58 107156364 107157793 CTCTTGTTCCATCCTCTGG 57 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 1 3 6 60 20 4611845 4611863 GTTCATCGCTATGAGGAGG 58 4612225 4612243 AATGAAAGCCGTAGAGGAC 57 NA DesignNoJunction Rattus norvegicus 81 Aspn ENSRNOG00000050431 ENSRNOT00000074041 3 1 1 83 17 15511747 15511767 TCCTTTCGATTTGTTTCCGAC 59 15509661 15511707 GATGTCAAACCTAGATCAGAACAG 59 NA Rattus norvegicus 81 Mrpl51 ENSRNOG00000019165 ENSRNOT00000025970 2 1 1 97 4 157706593 157706611 AGAGTAATGGCAGGGAGTG 59 157706672 157706778 AATAGTGGAACGCCCAGAG 60 NA InUTR Rattus norvegicus 81 Mir487b ENSRNOG00000036489 ENSRNOT00000054597 1 1 1 60 6 133877134 133877153 AGAGTGGTTATCCCTGTCCT 60 133877176 133877194 AAGTGGATGACCCTGTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 3 3 3 84 X 15755724 15755746 GAGGACACTCAATGAAATCTACC 59 15755517 15755680 GATGGCATTCTTCCAGGTG 59 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853,ENSRNOT00000049855,ENSRNOT00000045393 2 3 3 80 3 128929360 128929379 TGATCGGACATTTGATCCCT 59 128929420 128930509 CCTGATATAACCTGCACTGAG 58 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858,ENSRNOT00000074723 1 2 2 80 2 113606048 113606957 ACTCAGAGACACTTGTGGG 59 113605986 113606004 GGCTACTGCGAAATGAAGG 59 NA Rattus norvegicus 81 Rassf3 ENSRNOG00000005388 ENSRNOT00000007295 1 1 1 80 7 63516509 63518761 CACGAAATTGGAGAGTGGG 59 63516447 63516465 TTCGTCCTCTTCCTTGTCC 59 NA Rattus norvegicus 81 Cdkl4 ENSRNOG00000040266 ENSRNOT00000061975 3 1 1 80 6 3247160 3251197 GCACGAATTCTAATTCCAGGAG 60 3247101 3247119 TCCCACAAGAAGTTCAGGG 59 NA Rattus norvegicus 81 Mael ENSRNOG00000003790 ENSRNOT00000005060 3 1 1 80 13 84451711 84451732 AGAAATACTCAGAAATGGCTCG 59 84450356 84451672 ATACGAGTTTCTGCTTCTCTG 58 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 3 2 2 81 13 74490422 74490440 CTTCATGCTCTCATGGCTG 59 74485279 74490378 GACTTAATAACGCCCACGTC 59 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 1 3 3 122 5 2051973 2054773 CACAATGGATGGAGAGGAG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Arhgap39 ENSRNOG00000016566 ENSRNOT00000052227 1 1 1 80 7 117800342 117800360 CCCAAGTTCCACTCCTACC 59 117795473 117800299 TATGTGCTGTGTCACTTTGG 59 NA Rattus norvegicus 81 Asic4 ENSRNOG00000019985 ENSRNOT00000027135 2 1 1 80 9 82667660 82667864 TTGACTACATCTATGAGGTCTCC 59 82667904 82667922 CAGTGGACGTCCTAAGTGG 60 NA Rattus norvegicus 81 AABR07033357.1 ENSRNOG00000047243 ENSRNOT00000072550 1 1 1 89 11 18454194 18454227 CATCAATGTCTTGGCCGTC 59 18454280 18454298 TTGGTGAGGTCGATGTCTG 59 NA Rattus norvegicus 81 Dok7 ENSRNOG00000022419 ENSRNOT00000035385 2 1 1 82 14 80940795 80940814 CCTGTTTGACTGCATTGTCC 60 80937822 80940750 CAGAACTTGGGTCTGGGAG 60 NA Rattus norvegicus 81 Slco5a1 ENSRNOG00000008966 ENSRNOT00000011940 1 1 1 80 5 5920969 5935706 AATGTCAGAGACCTACCGA 57 5935750 5935768 GGCTGTGTATGACAGACTC 58 NA Rattus norvegicus 81 AC128212.1 ENSRNOG00000054355 ENSRNOT00000082247 1 1 1 119 8 130569866 130569887 TTCCTGCTAGTTGTGGCTC 60 130569765 130569783 CTCGCTCAGTAGAGTTGGG 60 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 1 2 2 80 14 7190508 7200509 TCACTCTAAAGGTCGGCTC 59 7200553 7200571 ACATGGCTCTGAAGTAGGG 59 NA Rattus norvegicus 81 RGD1563157 ENSRNOG00000032523 ENSRNOT00000041376 1 1 1 60 6 42947378 42947397 GGAGCTGTTGAAACAACTGG 60 42947420 42947438 TTTGGCTATGCGAAACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh18 ENSRNOG00000009949 ENSRNOT00000013343 2 1 1 80 2 138829940 138830050 CAGGAGCTATAGATATGCCCT 58 138829880 138829899 TCTCCTGCTTCACTATCTCC 58 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 1 2 2 80 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329877 87329896 TTAGAGGAGTCGACTGATGG 58 NA Rattus norvegicus 81 Zfp280b ENSRNOG00000028441 ENSRNOT00000081733 2 1 1 60 20 13569772 13569790 CAGATGTTCAGGAAGCCCA 60 13569730 13569748 GAATCACCACCTTCGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 2 2 2 83 1 65663874 65663892 CGGACATCAAGCTCTTTGG 59 65661740 65663830 CCTTCACAGCAATGTAATCCTG 60 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 2 1 1 80 4 175750049 175751632 TGGCTTTGTGAATCTAGACCA 60 175751673 175751692 ATTAGGTAACCAAGCCACCA 59 NA Rattus norvegicus 81 Plag1 ENSRNOG00000008846 ENSRNOT00000011721 1 1 1 89 5 16794220 16794753 AATTACAAAGGCACATGGCT 59 16794150 16794168 TCAGATGGTCTTTCCGGTG 59 NA Rattus norvegicus 81 Ogfrl1 ENSRNOG00000014142 ENSRNOT00000019062 3 1 1 80 9 29635061 29640396 ACATCTGAATGAGTCTCAGCA 59 29635001 29635020 AAACTCTCGTACCCAAGCTC 60 NA Rattus norvegicus 81 Htr2b ENSRNOG00000017625 ENSRNOT00000023829 1 1 1 82 9 93113993 93116197 AATTTCAATAGGCATCGCCA 58 93113930 93113948 GCTCACAGGTGATGTTGTG 59 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 1 2 3 83 1 66233735 66237018 GCTGTCCAGAGTGGATGAG 60 66233670 66233690 CATTGCTGGATTGTTCTTCCT 59 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281,ENSRNOT00000057036 3 3 3 80 12 46345325 46345346 TTACAGTATCCTCATCGGAACC 60 46345154 46345285 TTCTTGTCCAGGAACTCCTC 59 NA Rattus norvegicus 81 Olr1416 ENSRNOG00000046967 ENSRNOT00000052223 3 1 1 60 10 43946716 43946738 GCTATCTATAACTACATGCTCCC 58 43946678 43946698 ACACTACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037356.1 ENSRNOG00000048990 ENSRNOT00000072722 1 1 1 81 X 19386396 19386417 AGGCAACAGAAGGAGAAGAG 60 19386334 19386352 GGACCCACATCATCCTCAG 60 NA Rattus norvegicus 81 LOC100361328 ENSRNOG00000049135 ENSRNOT00000071724 1 1 1 80 9 23316072 23319194 GGACATGCATGTTGAAACTC 58 23319236 23319255 AGAAGGTTGGTGATTACCAG 57 NA Rattus norvegicus 81 Ndufb2 ENSRNOG00000026616 ENSRNOT00000030892 1 1 1 80 4 67383940 67383959 GTGGACAGATGAAGAACTGG 58 67384002 67385198 TCACCTTGCTCTCGTACAG 59 NA InUTR Rattus norvegicus 81 Mir196a ENSRNOG00000035614 ENSRNOT00000053737 1 1 1 63 7 144584265 144584286 GTTTCATGTTGTTGGGATTGAG 59 144584309 144584328 GACTGATGTAACTCAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifa3 ENSRNOG00000013778 ENSRNOT00000018512 3 1 1 81 3 149607253 149610697 TAGCGAGAATTATTGCACAGG 59 149610740 149610758 TTCAGACGGTCCAGAAGAC 59 NA Rattus norvegicus 81 LOC100363408 ENSRNOG00000047988 ENSRNOT00000073652 1 1 1 87 1 198120569 198120587 TAAGTTCGAGGGAAAGCCA 59 198120893 198120911 CTCAAAGGCATGGATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Ankrd31 ENSRNOG00000025321 ENSRNOT00000032960 1 1 1 80 2 27666383 27666403 ATGACAAAGCAGTTGGTTCTC 59 27666445 27668649 CACTGATGGTCTGATGCAC 59 NA Rattus norvegicus 81 Sdcbp ENSRNOG00000009683 ENSRNOT00000013563 1 1 1 80 5 19495824 19496467 ATTGGCTTGAAGGATGCTC 58 19496511 19496529 AAAGGCAGGCATGATTGTG 59 NA Rattus norvegicus 81 Dcdc2b ENSRNOG00000048876 ENSRNOT00000071940 2 1 1 80 5 147814222 147814523 GTGGGACTGTACACAAACTC 59 147814161 147814180 CATAGTAGTGGCCATTCACC 58 NA Rattus norvegicus 81 Sox17 ENSRNOG00000027357 ENSRNOT00000033116 1 1 1 103 5 14893660 14893678 AATGCCTTTATGGTGTGGG 58 14893745 14894200 TTCCAGGATTTGCCTAGCA 59 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 3 1 1 87 7 136316937 136380881 TATCGTGATGCAGGACTGG 59 136380932 136380950 GAACTGCATGTGAGGAGTG 59 NA Rattus norvegicus 81 Krt24 ENSRNOG00000010970 ENSRNOT00000014851 3 1 1 86 10 87192782 87193518 CTTCCGAATGAAGTATGAGCA 58 87192716 87192734 ATTTCGTCCAGCACTTTCC 59 NA Rattus norvegicus 81 Zfp870 ENSRNOG00000030416 ENSRNOT00000042638 2 1 1 91 7 15163537 15163748 CCTCTATAGGAAACAAGTTGAGC 59 15160880 15160898 GAACTTCTCCACCAGTTGG 58 NA Rattus norvegicus 81 Usp51 ENSRNOG00000021434 ENSRNOT00000029397 2 1 1 158 X 19270223 19270242 GACTTTCTAGATCAAGCGCG 59 19271101 19271119 TTCTCGATGCATTCTCAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Usp51 ENSRNOG00000021434 ENSRNOT00000029397 3 1 1 158 X 19270224 19270242 ACTTTCTAGATCAAGCGCG 58 19271101 19271120 ATTCTCGATGCATTCTCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iqcf5 ENSRNOG00000013164 ENSRNOT00000017570 1 1 1 148 8 115213531 115213549 TGATGGGAACATCTAGCCC 59 115214501 115214519 GAATGATCCACGCGTTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fbrs ENSRNOG00000042728 ENSRNOT00000055003 1 1 1 80 1 198935486 198935504 CTGCAGCCAATCCTTTCAC 60 198935548 198936632 GCCCAAAGGGATCAATGTG 59 NA Rattus norvegicus 81 Slc22a14 ENSRNOG00000042259 ENSRNOT00000055928 2 1 1 80 8 127858817 127860177 TACTGTTCAAGAGACTCCCTG 59 127858757 127858775 ACACATTGACTCCTCAGCC 60 NA Rattus norvegicus 81 Magix ENSRNOG00000010092 ENSRNOT00000013553 1 1 1 80 X 15672447 15672469 GCAGATATAGAAGTTGCAGACAG 59 15672507 15673933 CGTGTCAGATCTTTGATGCTG 60 NA Rattus norvegicus 81 Atf7ip ENSRNOG00000008870 ENSRNOT00000011803 2 1 1 80 4 170520294 170520317 CTGATGAAGAGGATATTTCGTGTG 60 170520356 170522956 TTTCTCCCTCTGGAGAGCT 60 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 1 2 2 80 1 89186887 89187604 GGCATCAATGGATTTGGAC 57 89186825 89186843 ATTCACTGCTACTACCCGA 58 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 1 1 1 162 9 117044773 117044791 GTTCTTTGTGTCTCCCGAG 58 117047692 117047710 TATCCTCAGTAGGCCACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rb1cc1 ENSRNOG00000006833 ENSRNOT00000061884 2 1 1 80 5 13070594 13070614 CGAAGAGTCTCTTATGATGCC 58 13067118 13070555 GCAACTTCATACATTTCCACTG 58 NA Rattus norvegicus 81 Shank3 ENSRNOG00000052296 ENSRNOT00000085191 2 1 1 80 7 130506245 130506265 AGTCTGTAGATGTGGAAGGTG 59 130506307 130506407 CGTTCACTCCGTTTACCTC 58 NA Rattus norvegicus 81 LOC286960 ENSRNOG00000013245 ENSRNOT00000017852 3 1 1 82 4 69209716 69209735 CAGATCCTGTGCATCTACAG 58 69209144 69209671 GTGCTGGGTATTTACCACC 58 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 2 1 1 80 9 119452115 119452229 GGAAGATAGCTTTATCCGCC 58 119452269 119452290 AGTAACAGACAAAGGAGTACAG 58 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 3 1 1 80 9 119388192 119396158 CGTCTTTGTTCGAGATGCTG 60 119396199 119396219 TTGTTAGCATCCAAAGACACC 59 NA Rattus norvegicus 81 Nup88 ENSRNOG00000006126 ENSRNOT00000009015 1 1 1 80 10 57584010 57584029 CCAGACTCCTTTGAGAAGCA 60 57583737 57583971 CTTCTCAGATGACTTGAGAAGTG 59 NA Rattus norvegicus 81 Cars ENSRNOG00000020651 ENSRNOT00000050721 2 1 1 80 1 216778484 216779447 CCCTGAATGTTCTCCCTCC 60 216778422 216778443 CAATCTTCTGGACGAAGTTCAC 60 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 2 4 4 81 10 65307778 65307796 CACCAAGATTGCTGACTCC 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 LOC100910606 ENSRNOG00000048998 ENSRNOT00000072522 3 1 1 60 5 137497791 137497811 ATTCTGGATATGGGCTATGTC 57 137497833 137497851 CACAGACCAGATGTACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uggt1 ENSRNOG00000014901 ENSRNOT00000020558 3 1 1 80 9 42774705 42774725 CTGGCTATGGTGTAGAATTGG 59 42773467 42774663 TTACCTCGGTCCCTTTCAC 59 NA Rattus norvegicus 81 Ppargc1a ENSRNOG00000004473 ENSRNOT00000006071 3 1 1 80 14 63095901 63100909 TGGAGTGACATAGAGTGTGC 60 63100949 63100970 TTCAGAAAGGTCAAGTTCAGGA 60 NA Rattus norvegicus 81 Sntg1 ENSRNOG00000007294 ENSRNOT00000009679 3 1 1 80 5 10243711 10263521 GAAGACTGTGCATGTGCTC 59 10263562 10263583 GTAGTTGAGGTGTAATCCACTG 59 NA Rattus norvegicus 81 Lrrc18 ENSRNOG00000020080 ENSRNOT00000027204 1 1 1 88 16 9253710 9256995 CCAGGAAGAATGGAGTGTG 58 9257047 9257065 TTTGGGTTCTCATGCAGAC 58 NA InUTR Rattus norvegicus 81 Fmo3 ENSRNOG00000003620 ENSRNOT00000004864 3 1 1 80 13 80845743 80846478 AAGACTCCTTTCCAGGTCTG 59 80845682 80845700 CTTTCCATGTTCCTGGCTC 59 NA Rattus norvegicus 81 Cd68 ENSRNOG00000037563 ENSRNOT00000056918 1 1 1 80 10 56269598 56269749 TTGGATTCAAACAGGACCGA 60 56269537 56269558 GGAAGGACACATTGTATTCCAC 59 NA Rattus norvegicus 81 Fam193a ENSRNOG00000013832 ENSRNOT00000018616 2 1 1 80 14 81568519 81568538 AGAGTTGCGTAAAGTTGCTG 59 81564848 81568478 TTCATTGTCATCTGCTCATCC 59 NA Rattus norvegicus 81 LOC684299 ENSRNOG00000039663 ENSRNOT00000060827 3 1 1 82 9 23559742 23561851 GAAGGAAGGGTTCTGACAC 58 23559678 23559697 TTGTCCAAGTCAGACTTGTG 58 NA Rattus norvegicus 81 Tnrc6c ENSRNOG00000022395 ENSRNOT00000040629 2 1 1 80 10 106745285 106745305 ATTAACCTCGCCAATTAACCC 59 106745346 106747405 TGTAAACGTTGGTATGCCAG 59 NA Rattus norvegicus 81 Fdx1 ENSRNOG00000012123 ENSRNOT00000016263 1 1 1 96 8 56378347 56386899 GATGGATTTGGTGCGTGTG 60 56378269 56378293 CATCAGTAATGGCATCTAACTTCTC 60 NA Rattus norvegicus 81 RGD1564405 ENSRNOG00000008382 ENSRNOT00000011083 3 1 1 82 5 3676089 3676465 AACCTCAGAACCTCAGTTCTG 60 3676509 3676527 GCTCGTGTCTACAACTTGC 59 NA Rattus norvegicus 81 Nuf2 ENSRNOG00000002711 ENSRNOT00000003650 1 1 1 80 13 87824013 87825324 GGACCATGATTGAAGATTGC 57 87823952 87823970 TGTCTTGATTAATGGCGGT 57 NA Rattus norvegicus 81 Mtl5 ENSRNOG00000014671 ENSRNOT00000019861 2 1 1 81 1 218635681 218635701 AAGTTCTCATCATCCCAGGAG 59 218635744 218637407 GCTGACAAATCACCATGGG 59 NA Rattus norvegicus 81 Ifngr2 ENSRNOG00000002032 ENSRNOT00000002779 3 1 1 80 11 31701928 31704879 AGTACAGCTACGTCGATGG 59 31704921 31704941 TGAAGTCACATTTCGTCTCTG 58 NA Rattus norvegicus 81 Zfp398 ENSRNOG00000006703 ENSRNOT00000008743 2 1 1 80 4 77535727 77536085 CTCATCTCCATGGATTATGCC 58 77536125 77536145 GTCATCTGTACTGTGTTCTCC 58 NA Rattus norvegicus 81 Ckap2l ENSRNOG00000026143 ENSRNOT00000039794 2 1 1 82 3 121804885 121804903 TACTGGCAAGTAAAGGCCC 60 121799989 121804839 CAGCTCCTGTATTGGTGCT 60 NA Rattus norvegicus 81 Ifng ENSRNOG00000007468 ENSRNOT00000009919 1 1 1 80 7 61338924 61338945 TCACTAACTTCTTCAGCAACAG 59 61338986 61341290 TCTGTGGGTTGTTCACCTC 60 NA Rattus norvegicus 81 Rbp3 ENSRNOG00000051911 ENSRNOT00000090679 2 1 1 80 16 10284442 10284461 CTGGACAAGATCTACAACCG 58 10284504 10285934 GCCATATCGTTCACCTGTG 59 NA Rattus norvegicus 81 LOC100359539 ENSRNOG00000008450 ENSRNOT00000011163 2 1 1 60 19 25392533 25392554 ACTTATTAGCAGAGATGAGGGT 59 25392575 25392593 CAGGTGCTTGAACATCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359539 ENSRNOG00000008450 ENSRNOT00000011163 3 1 1 60 19 25392228 25392246 CGCTGTTTCTATGGCTTCC 59 25392269 25392288 GGAGACTGTACATTTCGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 2 2 2 83 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824942 43824960 TCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Npl ENSRNOG00000002775 ENSRNOT00000003713 3 1 1 80 13 70943683 70946826 AGTTACCAGTTCCGCATCC 60 70939666 70939684 CATGATGGCTTTGGTCTGC 60 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076782 2 1 2 60 1 134999674 134999694 TGGAACACATCAATCTACACC 58 134999716 134999734 CCAGGAAAGTCAAACTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eva1c ENSRNOG00000002072 ENSRNOT00000002838 1 1 1 82 11 31069364 31075200 TTGCTTACATTCGAGCCCA 60 31075246 31075264 ACACAGTGTGAGGAACAGG 60 NA Rattus norvegicus 81 Kcng3 ENSRNOG00000004535 ENSRNOT00000006094 3 1 1 131 6 6842164 6842182 ATCGTGTCTATGGTGGTGC 60 6795686 6842069 TTCAATTATCCCGGAGGGC 60 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 3 2 2 80 7 138472659 138472802 GTATTCAATTCCCGCACGG 59 138472597 138472616 GTAGATGGGAAGGACCTCAG 59 NA Rattus norvegicus 81 Sorbs2 ENSRNOG00000013391 ENSRNOT00000029628 2 1 1 80 16 49630215 49630234 GCTGGAACTCAGAGAAAGTG 59 49628296 49630174 GTTCTTCTTGAAGTTCCCACG 60 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 3 1 1 146 7 74990054 74990072 ATGTTCAACCACCAAAGCA 58 74990517 74992339 AAACCACCAATCTCTTAGTCC 58 NA Rattus norvegicus 81 Chadl ENSRNOG00000024631 ENSRNOT00000000205 2 1 1 80 7 122923494 122923919 ACCTGGAGCAGATTTCTCC 59 122923432 122923450 GAAGTTGGTTCTGCTGCAG 60 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834,ENSRNOT00000066114 2 2 2 84 3 119719203 119723823 CAAGTCATTTGATGAGAATGGC 58 119723868 119723886 ACTGACACAGTATCGAGGG 59 NA Rattus norvegicus 81 Dgkk ENSRNOG00000039323 ENSRNOT00000060247 1 1 1 80 X 16460833 16462367 TTACACCTGAAACGATACGCT 60 16460773 16460794 GAGAAATCTTTGCGTCTAGTCC 59 NA Rattus norvegicus 81 Foxi1 ENSRNOG00000006293 ENSRNOT00000009058 3 1 1 109 10 19163958 19163976 ACAACAAGAGCAAAGCTGG 59 19162246 19163885 GTAATTCCCTTTGCCTGGG 59 NA Rattus norvegicus 81 Arhgap11a ENSRNOG00000008115 ENSRNOT00000010994 3 1 1 80 3 105291741 105292407 GTGTTTCTCTTAGGGCAAGTG 59 105291681 105291702 TTGTCTGAAGAAGATTTGGTGC 60 NA Rattus norvegicus 81 Cntnap5b ENSRNOG00000032206 ENSRNOT00000047108 2 1 1 80 13 22563211 22578103 CATCTTAGGCAAAGTTACAGAGAC 60 22578142 22578160 AGGCATCCAATGAAACCCA 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 2 2 2 80 11 34595205 34597630 TCTCAGTTTGGCTTCATACTC 58 34595145 34595166 CCAGTAAGTTAAGCCTAAGGAG 58 NA Rattus norvegicus 81 Fgf11 ENSRNOG00000014882 ENSRNOT00000020152 3 1 1 82 10 56406877 56406895 CAGGGTTTCTACCTCCAGG 59 56406603 56406832 AGATTGAAGTGGGTGAAGGA 59 NA Rattus norvegicus 81 AC118147.2 ENSRNOG00000060693 ENSRNOT00000087411 3 1 1 80 1 88144467 88145622 CCTGCAAAGTTACAATAGGGA 58 88144407 88144428 GAGTTGAGCATGTATTTGATGG 58 NA Rattus norvegicus 81 Psmg1 ENSRNOG00000001643 ENSRNOT00000002242 3 1 1 80 11 36331853 36331874 ATTCAAAGATACCGTCTACTGC 58 36330394 36331812 CAGTAGCTCAGAACTGCTG 58 NA Rattus norvegicus 81 Lamp5 ENSRNOG00000005457 ENSRNOT00000007274 2 1 1 80 3 129019859 129019877 TCTCATGGCAGAGTTTGCA 60 129019920 129020311 TGCTCTGTGATCAGATCCAC 60 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 3 2 2 80 7 13045676 13045694 CATCTCTGAGCAGGAGAGC 60 13045737 13046142 TTGGCTATCTGCTCCTTGTC 60 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 1 2 2 80 8 94008008 94069194 AGGAATAAAGAGCTTGCCAG 58 94007947 94007965 CTCCAAACAGGTTGTGGAG 58 NA Rattus norvegicus 81 Jph2 ENSRNOG00000008170 ENSRNOT00000010939 3 1 1 162 3 159754059 159754077 CCAGAAGGCTGAGATTGCT 60 159713797 159715484 CTTCTGATACTCCGGACCTG 59 NA Rattus norvegicus 81 U2af2 ENSRNOG00000015914 ENSRNOT00000021391 2 1 1 80 1 72316549 72316568 AGTATGGGCTGGTCAAATCC 60 72313007 72316507 CCACAAAGATCTTTCCGCAG 60 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 3 2 2 80 13 85472107 85473886 AGAAGATAGAGCGACAAGAAGAG 60 85476280 85476300 TCGCAAACATGGATTTCATCC 60 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 2 2 2 80 2 87003455 87003473 GCCTGTTCAGTGGAATCTG 59 87003514 87004027 TTAGAGAAAGTTAGACCCAGGA 58 NA Rattus norvegicus 81 Olr662 ENSRNOG00000048178 ENSRNOT00000047726 3 1 1 60 3 77493467 77493486 GTTTCCTCATGCTGATGGTC 59 77493426 77493444 GCACTGTGGTTTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 3 2 2 80 13 85855064 85858004 CATGAAGAGGGAAGCTGTG 58 85858048 85858066 CCAGTACTGGCACATTCTG 58 NA Rattus norvegicus 81 Ankrd12 ENSRNOG00000012733 ENSRNOT00000017613 1 1 1 80 9 113616437 113616455 CATGAAGCGTAAACTGCCT 59 113616499 113622885 TGTCCTGGGTCTGAATCTG 59 NA Rattus norvegicus 81 Gltp ENSRNOG00000001192 ENSRNOT00000001581 3 1 1 95 12 47667715 47681128 CTTCTTCGATTGCCTTGGG 59 47682855 47682873 GGGTCAGTGTCATAGACGG 60 NA Rattus norvegicus 81 Gal ENSRNOG00000015156 ENSRNOT00000020425 3 1 1 80 1 218653306 218654570 TTCTTGCACCTTAAAGAGGC 59 218653245 218653264 CTGCTCTAGGTCTTCTGAGG 59 NA Rattus norvegicus 81 Zc3h10 ENSRNOG00000040281 ENSRNOT00000061995 1 1 1 185 7 2970390 2971631 TACCTCAGTCACCAAGAGTG 59 2970224 2970242 ACAGATGGCATCTGAGGTG 60 NA InUTR Rattus norvegicus 81 Pnlip ENSRNOG00000017725 ENSRNOT00000024065 2 1 1 80 1 279804860 279807180 TTTCTGCAAATAAGTGCTTCCC 60 279807219 279807239 TCTTCCCAGGGTATTTGTCAG 60 NA Rattus norvegicus 81 Fbxo39 ENSRNOG00000014953 ENSRNOT00000020071 2 1 1 80 10 58877483 58877503 CTGGACGTTAAGTTTGTGGAG 59 58877544 58878134 AATTCTCACCTTCAGTGTGC 59 NA Rattus norvegicus 81 Nop56 ENSRNOG00000007128 ENSRNOT00000009564 1 1 1 80 3 122807119 122807140 GGCTTTCTTTCTATGAGACTGG 59 122807181 122807385 CTTCCTCTGCCTGTACCAC 60 NA Rattus norvegicus 81 RGD1310819 ENSRNOG00000018366 ENSRNOT00000068496 1 1 1 80 9 44195093 44195920 CCATCAGAACTTGGCTCAG 58 44195031 44195049 TCGGAACTAGCATAGCTGG 59 NA Rattus norvegicus 81 Nifk ENSRNOG00000025701 ENSRNOT00000061619 2 1 1 83 13 34274583 34276476 CTGAGGCTAACCAGGATCC 59 34276520 34276541 CGTCATTGATTTCCATCAACTG 58 NA Rattus norvegicus 81 Bbs7 ENSRNOG00000015816 ENSRNOT00000021453 3 1 1 80 2 123312350 123313102 TAATGGAGACGGAGGTGAC 59 123312288 123312307 GCTGTGATCTGAATAAGCCC 59 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 2 2 2 80 12 40624635 40624653 GTTTAAGCGTCTGGCTGAG 59 40624694 40625103 TTGTCACCATAGTCTGAGATCC 59 NA Rattus norvegicus 81 Isl2 ENSRNOG00000015336 ENSRNOT00000021074 2 1 1 110 8 60121651 60121969 AACAGCTGGTCTCCTTCTC 59 60122040 60122061 GACTAGGTACCATACTGTTGGG 60 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 2 2 2 85 12 44968641 44968659 GACACATTCACAGGGTGAC 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Adgrb3 ENSRNOG00000012045 ENSRNOT00000016194 2 1 1 80 9 31442104 31442125 TCCCATACGAAATGCTTATGTG 59 31440468 31442068 GGATTCCATGACTATTTCTCTAGG 58 NA Rattus norvegicus 81 Tmem8b ENSRNOG00000015664 ENSRNOT00000021227 1 1 1 80 5 59186269 59191040 TGTTCTTCTCCACGTTCTACC 60 59191081 59191100 ACTGAAGCACATCGTAGTCC 60 NA Rattus norvegicus 81 Gldn ENSRNOG00000024082 ENSRNOT00000033900 2 1 1 80 8 58908452 58908472 CAATGATGATACCTTGGTGGG 59 58908514 58909088 GACGTGATCATGGGTTCTG 58 NA Rattus norvegicus 81 LOC499602 ENSRNOG00000013692 ENSRNOT00000068405 2 1 1 80 2 127811077 127811202 AGGAGACCATCATTATTGGAGG 60 127811241 127811261 AGCAACAATGAAGCCATTCTG 60 NA Rattus norvegicus 81 LOC499602 ENSRNOG00000013692 ENSRNOT00000068405 3 1 1 80 2 127811076 127811201 CAGGAGACCATCATTATTGGAG 58 127811241 127811260 GCAACAATGAAGCCATTCTG 58 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 2 1 1 80 14 9300803 9300823 GTGACCGCTATTTATGAACTG 57 9300863 9302151 CGATTTCGAGTCTTTACATGG 57 NA Rattus norvegicus 81 Colq ENSRNOG00000019615 ENSRNOT00000026550 2 1 1 80 16 7627664 7629569 ACCCTTAGCACATCATACGG 60 7627603 7627621 TCACGTGAAGTATCGGCAG 60 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 3 2 2 81 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296077 116296096 GAACATCAGGAGTGCTTCAG 59 NA Rattus norvegicus 81 AABR07002241.1 ENSRNOG00000015707 ENSRNOT00000021046 2 1 1 80 1 69514821 69521267 CTTCTGCTACTGATATGGATCAG 58 69521307 69521325 TCTGAATGCATTTGTCCCG 59 NA Rattus norvegicus 81 RGD1565616 ENSRNOG00000021237 ENSRNOT00000028842 2 1 1 80 3 123273553 123274429 AGTATGGCAGATGGATGGT 58 123273491 123273511 AAAGGTATTTCTGGAAGTGGG 58 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000058943 ENSRNOT00000079450 2 1 1 60 7 13553217 13553236 CCTCTCACCTTTCCATTGTC 58 13553176 13553194 GAACTGACGTACACTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp27 ENSRNOG00000003722 ENSRNOT00000004965 1 1 1 80 13 84306054 84312197 CTATAGAGGGAAAGTCCTGGTC 59 84305995 84306014 AAGATCATCAGGTAGGCGAC 59 NA Rattus norvegicus 81 Krt16 ENSRNOG00000014441 ENSRNOT00000019477 2 1 1 83 10 88151125 88151574 AGAGCAAGATCGTTAGAGC 57 88151060 88151078 TGAAGTCATTAGCTGCCAG 58 NA Rattus norvegicus 81 RGD1563365 ENSRNOG00000008696 ENSRNOT00000011511 3 1 1 80 7 26476782 26476802 TCAACTCTAAGCCTCATTCCA 59 26474448 26476741 GAACCTGGTCTAACAAAGGG 58 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 2 2 2 80 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548465 AAACTTCTGGTACAGCAGC 58 NA Rattus norvegicus 81 Slamf8 ENSRNOG00000008736 ENSRNOT00000011869 3 1 1 80 13 90971178 90974471 CTCAAGGTGTACGATGCAG 58 90971116 90971134 GGTATTGAGAGGTTGAGCC 58 NA Rattus norvegicus 81 Acap1 ENSRNOG00000015674 ENSRNOT00000021357 1 1 1 80 10 56501269 56501287 CTGGAACTGCTTTGAGGAC 59 56501066 56501225 CCTCGATCACATTGACCTG 58 NA Rattus norvegicus 81 Dctn6 ENSRNOG00000013254 ENSRNOT00000017756 2 1 1 80 16 61800744 61807504 GATGTAACCATAGGTCCTAGGA 58 61807545 61807563 TTCGCCGATAATGATTGGG 58 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 1 1 1 96 5 76167981 76167999 ATGTCCCAGTCTCAGTTCG 59 76168056 76171172 GCTTGTAGACCTCGTAATTCTC 59 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 3 1 1 97 5 76168060 76171174 ATTACGAGGTCTACAAGCAG 57 76171234 76171252 CTCGTTCTTCATCCACCTG 58 NA Rattus norvegicus 81 Tmem131 ENSRNOG00000017265 ENSRNOT00000023550 3 1 1 80 9 43367898 43369841 CTCCTCAGGGAGGATACAG 58 43367836 43367855 CTTCCCTTGAGACAGTTCAC 58 NA Rattus norvegicus 81 Ccdc18 ENSRNOG00000024545 ENSRNOT00000036442 3 1 1 81 14 2582951 2583662 CTGAATTGAGGATTAAGCTTGC 58 2582891 2582909 TGAGACAACTGGTTCACAG 57 NA Rattus norvegicus 81 Lrrc8c ENSRNOG00000002122 ENSRNOT00000002896 3 1 1 109 14 5290025 5315876 GGATGTACTTTACAAGTCATGC 58 5289937 5289957 GTATTGATCACAGTCTGGGAG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 3 2 3 82 10 87953597 87953615 CTAAGTCTGAGAACGCCAG 58 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Tlr10 ENSRNOG00000038722 ENSRNOT00000059124 2 1 1 86 14 45076167 45081674 CTCATCAGAGGAACTTTGACC 59 45081719 45081740 GCACAAAGATGGACTTATAGCT 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876,ENSRNOT00000057473 3 2 2 80 2 172349939 172349957 AAGCTTCTTTGACGATGGC 59 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Tfcp2l1 ENSRNOG00000002414 ENSRNOT00000003280 2 1 1 80 13 34653471 34653490 GATGATTTGGTCCAGGTCTG 58 34653533 34655658 CTTTGGCCTCACATTCCTG 59 NA Rattus norvegicus 81 Krt31 ENSRNOG00000030344 ENSRNOT00000018176 1 1 1 83 10 87960849 87960867 GACCAGGTGTCAGTACGAG 60 87960694 87960802 TTCAGCTCCTCAGTCTGTG 59 NA Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 2 1 1 80 7 81360310 81360328 ATTTCAGCACAAAGGACGC 60 81342625 81360266 CATCAAACCACCAACCTCC 59 NA Rattus norvegicus 81 LOC685782 ENSRNOG00000024884 ENSRNOT00000039260 2 1 1 60 X 99250884 99250904 CTGTTCATCAGAGACACTGGA 60 99250922 99250944 CAGTACATATCTGGGAAAGACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1h ENSRNOG00000057769 ENSRNOT00000085747 3 1 1 81 12 41220193 41220212 AAAGTTCCTGTGGAATCGTC 58 41217293 41220153 CTTCTCCTTACACAGTTGATACC 59 NA Rattus norvegicus 81 AABR07048397.1 ENSRNOG00000038905 ENSRNOT00000022054 2 1 1 81 5 76749220 76749240 TGACCTACTCGTGTGAAGAG 59 76749284 76749302 CTCTTTGGTTCCACCACAC 59 NA Rattus norvegicus 81 Cops4 ENSRNOG00000023650 ENSRNOT00000003046 1 1 1 80 14 10732674 10732694 CTTACATAAACCGAGCTTCCT 58 10732479 10732635 GTGCATAGCAAACCTTATAGTG 58 NA Rattus norvegicus 81 Prdx3 ENSRNOG00000010958 ENSRNOT00000015186 1 1 1 80 1 282247688 282249538 TAGCACCAGTTCTTCATTCC 58 282247627 282247645 TCTCCATTGACAACAGCAG 58 NA Rattus norvegicus 81 Ccdc42 ENSRNOG00000004075 ENSRNOT00000005423 3 1 1 80 10 55176671 55176934 TCATCTTCTGGGAATCTCGC 60 55176976 55176995 CCATCTTAATGGTGCCAAGC 60 NA Rattus norvegicus 81 Ric8a ENSRNOG00000013256 ENSRNOT00000018470 1 1 1 80 1 213611635 213611653 ATGACAGAGGAGCAGAAGG 59 213611697 213612082 TTGGATGAGTCTGTGCCTG 60 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 2 2 2 92 5 157172163 157175035 ATCTTCTGCTGGACAACCTC 60 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 3 2 2 92 5 157172163 157175034 ATCTTCTGCTGGACAACCT 59 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Ddx5 ENSRNOG00000030680 ENSRNOT00000048490 1 1 1 80 10 94985244 94985480 ATGGGCCTATTTGCTTGGT 60 94985182 94985203 CTCTACAATATTCAGCAGCGAC 59 NA Rattus norvegicus 81 Tas2r119 ENSRNOG00000011963 ENSRNOT00000015904 3 1 1 60 2 85305785 85305806 CATCTTTACTGTTGCTGTTCTG 58 85305824 85305845 CATCTGCCTGCTATAATTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf3 ENSRNOG00000011756 ENSRNOT00000015638 3 1 1 80 9 37088575 37088594 TGAGTCCAGAAGAACTAGCG 59 37085934 37088535 TCTCGATCATCTCTATGGTGTG 59 NA Rattus norvegicus 81 Akr7a3 ENSRNOG00000017899 ENSRNOT00000024160 1 1 1 80 5 157810073 157812346 TGTACATGGACCGCTACTG 59 157812388 157812408 GGCCATAGGTAGTCTTCAGAG 60 NA Rattus norvegicus 81 Slc39a5 ENSRNOG00000033361 ENSRNOT00000045547 3 1 1 81 7 2817185 2817205 CTTTATCAGATTGACAGCCGT 59 2816968 2817142 TATGAAGCAGGGCAGACAG 60 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 3 2 2 80 8 50239768 50239786 TTTGCCTGGGCATATTCCT 59 50239382 50239725 TCTTCTTCCTTTGCCTCCAG 60 NA Rattus norvegicus 81 RGD1562638 ENSRNOG00000022181 ENSRNOT00000039592 1 1 1 88 16 68586564 68588814 ATTTCCCAGTTGGTGTGGA 59 68588866 68588884 AGGCATCTTCCTGAAAGGG 59 NA InUTR Rattus norvegicus 81 Ccdc130 ENSRNOG00000008319 ENSRNOT00000011150 1 1 1 82 19 25369943 25370971 CTCCGATCTACAGGTTCCG 59 25369879 25369897 ATAGTCACAGTTGGCAGGG 59 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000021609 ENSRNOT00000029395 3 1 1 80 5 146340452 146341805 ATGCACAAGTAAGTATGCCC 58 146341847 146341866 GCGACCTTAACTATTGACCC 59 NA InUTR Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 3 2 2 81 10 89402947 89403467 GCTATTCTTGGGTGATCAAGTC 59 89401980 89401999 GTCACAACGTCTCCTTTGAC 59 NA Rattus norvegicus 81 RGD1561106 ENSRNOG00000048318 ENSRNOT00000044849 2 1 1 60 X 14733528 14733546 AACTTCTCACGCTACTTCC 57 14733486 14733506 GAAATATCTCAGCATTGCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367,ENSRNOT00000003072,ENSRNOT00000033489 2 3 3 80 14 10907296 10908993 GGACCAGACACTTTCTCCA 59 10909035 10909055 CCTTCAGAGTAGTTCCTCGTC 60 NA Rattus norvegicus 81 Crybb2 ENSRNOG00000050023 ENSRNOT00000072683 3 1 1 82 12 49584801 49585807 GACCCATCAAAGTGGACAG 58 49585851 49585871 GACAATCTCCATCTTCTTGCC 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 1 3 3 80 20 49477823 49484445 GCAAAGAGGTTATTGGTGTGG 60 49477763 49477781 TGTAGACTTCGCCGATCAG 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 3 3 3 82 20 49484492 49484510 TACTTCTGTTCAAGCCGAG 57 49477826 49484447 CACCAATAACCTCTTTGCTG 57 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000081138,ENSRNOT00000039696 1 2 2 80 8 115255795 115255813 GGAAGGAGACAAAGAGCAG 58 115252684 115255754 ACTTCAGGTTTAGGTTTCTCAG 58 NA Rattus norvegicus 81 Prex1 ENSRNOG00000006952 ENSRNOT00000009517 2 1 1 80 3 163377158 163382183 CAAGCGGAAATCTAGGGTC 58 163377096 163377114 CTGAAGATGTACAGGGAGC 57 NA Rattus norvegicus 81 RGD1564447 ENSRNOG00000032401 ENSRNOT00000049001 1 1 1 60 7 94777878 94777900 GTGAAGAAACCTCATCGTTACAG 60 94777919 94777938 GATAGCGTCTGATTTCTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprasp2 ENSRNOG00000037658 ENSRNOT00000004260 3 1 1 60 X 106361037 106361055 CCTTACCTAATGCCGTCAC 58 106361075 106361097 GACTTCGTAACACTTGTAGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563606 ENSRNOG00000002975 ENSRNOT00000003981 1 1 1 60 X 16946523 16946541 AAGCCTCTAATGTCACCAC 57 16946565 16946583 CTCTTGTTGCATCGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Banf2 ENSRNOG00000006032 ENSRNOT00000007946 2 1 1 80 3 138174172 138183560 TCAACAAGGCCTATGTCCT 58 138183604 138183622 AGCAGATGATCCACCTCTG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 3 2 2 80 7 2558712 2558730 CACAGAGAAGTGTGAAGCC 59 2558562 2558668 TCAGAAGGTGCTGCTACTC 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 2 1 1 60 2 199529072 199529093 GCCAACTTCAACTATGACAGAC 60 199529033 199529053 ACACCAATATGTCCATGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf122 ENSRNOG00000023473 ENSRNOT00000031701 3 1 1 80 16 64771798 64778113 TGCTACTTCATCAGCAAACTC 59 64771481 64771499 AGCATCACCTTTAAGCACC 58 NA Rattus norvegicus 81 Cyb561d1 ENSRNOG00000052232 ENSRNOT00000087329 2 1 1 104 2 210991305 210991323 CTTTCTGACAGTGCTGTCC 59 210990317 210990336 AAGAGTAGGATCGCTTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Ube2s ENSRNOG00000016930 ENSRNOT00000022977 1 1 1 81 1 72580545 72581164 CTGTTGAAGTCATGAACTCCA 58 72581207 72581225 GTCAGTGTTGTCACCTCCT 59 NA InUTR Rattus norvegicus 81 Tigd4 ENSRNOG00000010741 ENSRNOT00000014409 1 1 1 60 2 183599261 183599280 GGTGGTATCGAATTGCTCAG 59 183599303 183599321 TTTAGACGCAGCATTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 1 2 2 80 1 126986771 126986790 GACCTTCTACTTCATCGGTC 58 126986831 126988731 CTGTCAGAGGGTTATAACCAC 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000038654 ENSRNOT00000059010 1 1 1 60 X 33722052 33722072 TTCAGAATCAAGCGATTCCTG 59 33722012 33722031 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111,ENSRNOT00000087579 3 2 2 80 3 167981681 167989376 GGAAGAAGTCAGTTAAGGAGGA 59 167976632 167976651 TTACAGTCTCTACTGGTGGC 59 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 2 2 2 80 10 59810588 59810606 TATTTCCGAGTCACCGGAG 59 59810647 59812798 CTGCAGGAAATATTGAATCCCT 59 NA Rattus norvegicus 81 Pidd1 ENSRNOG00000049179 ENSRNOT00000072774 1 1 1 80 1 213984945 213984963 GGGACCTCATGACTTCCTG 60 213984806 213984903 CATAAGCTCACATTCTGCTGG 60 NA Rattus norvegicus 81 Gatc ENSRNOG00000001161 ENSRNOT00000001536 3 1 1 80 12 46995210 46995231 CTGTGCAGAAGAACTACTACAG 59 46995270 47038026 GGCAAAGGAATATTACCTGGG 59 NA Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 1 1 1 80 1 141551533 141551551 CAGAGCCTAGGAACAAGAC 57 141551594 141552363 CAGAAAGACTCTGGTACACC 58 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 1 2 2 80 2 208787620 208795908 GGCCTACTATGAGATTTGTACC 58 208795948 208795967 TAGGCATAGGGAACTTCCTG 59 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 2 2 2 80 10 91925997 91926490 CGTTATTGGAATGACCAATCG 58 91925937 91925958 ATCTCCATCTTAACTTCCAGTC 57 NA Rattus norvegicus 81 Lhx5 ENSRNOG00000001392 ENSRNOT00000001883 2 1 1 83 12 41668767 41668786 TCGACGAGAACAAGTTTGTG 59 41668097 41668722 AGGATGACACTGAGTTGAGG 59 NA Rattus norvegicus 81 Slc10a5 ENSRNOG00000032426 ENSRNOT00000045438 1 1 1 60 2 93670011 93670032 AAGCAAGGAAGTCATTTCTCAG 59 93670052 93670071 GTAAACGACAGCATTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000066758 1 1 2 115 10 87721757 87721775 CTGCATTTCTAGCTGCTGC 60 87695183 87695201 TAGAAATGCAACAGCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Hsd17b7 ENSRNOG00000002826 ENSRNOT00000003812 1 1 1 80 13 88303375 88303396 CAGAATGACAAGATTACTGCTG 58 88300166 88303336 TTCCCGAATCAGGATAAAGTG 58 NA Rattus norvegicus 81 Eno3 ENSRNOG00000004078 ENSRNOT00000005612 2 1 1 80 10 57283402 57283518 CCAGCTTATGAGGATTGAGG 58 57283560 57283579 CATTTGGCCTTTGGATTACG 58 NA Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 1 2 2 81 10 91098712 91100969 TACTTCCTCCGAGGGTACC 60 91098649 91098668 GCTTCATGTACTTGAGCAGC 60 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142,ENSRNOT00000083329 1 2 2 80 8 128801419 128802269 ACCCTCATTCTCAAGACCC 59 128802313 128802331 AGCCATCAGAGTTCTACGG 59 NA Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 3 1 1 80 2 187105564 187105583 AAGATAAGCAAGGGCAAAGC 59 187104454 187105521 AACAACCAGCTGTTCTGAC 58 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 3 3 3 80 1 219856720 219857182 GTCTTCAAGTTCTGTGAGGTG 59 219857223 219857242 GTTTGGCAGGTAGTTAAGGG 59 NA Rattus norvegicus 81 Zfp167 ENSRNOG00000004104 ENSRNOT00000043784 1 1 1 81 8 131940116 131947037 CCTATCTGGGTAAGAACAGGA 58 131947078 131947098 GTGTCAAGTGAATGTGATCCT 58 NA Rattus norvegicus 81 Tfip11 ENSRNOG00000000663 ENSRNOT00000000828 3 1 1 82 12 50323349 50323367 CACACCCTTCTGTCAAGGA 59 50321881 50323306 CATGTAGGCACCAACATTAGAG 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 3 3 3 80 X 23101789 23101808 CACTACCCTGAGGAATTTGC 59 23097043 23101748 CAGATCCTCATAGGACTCTCC 59 NA Rattus norvegicus 81 Ccdc185 ENSRNOG00000022104 ENSRNOT00000037997 1 1 1 60 13 101161529 101161547 AGATCCCATCTTCCAGGAG 58 101161487 101161506 ATAGCAGCGGTTTATCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560784 ENSRNOG00000032522 ENSRNOT00000049864 3 1 1 60 X 14889719 14889737 GGAAAGCCGCAACATAGAC 59 14889677 14889698 CGAATCCCTAAGTAAACCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 2 2 2 81 14 84650310 84650331 ACCTCTATCTCGTGTATAACGT 58 84647898 84650270 AACTGAGGTCATCCAAATAGC 58 NA Rattus norvegicus 81 Scn4a ENSRNOG00000012134 ENSRNOT00000016841 3 1 1 81 10 94540136 94540157 CATTGATGACTTCACATTCCTC 58 94539656 94540094 AAACTCTGTCACATACGCC 58 NA Rattus norvegicus 81 Zglp1 ENSRNOG00000042601 ENSRNOT00000068598 1 1 1 80 8 22082052 22082070 AGGACTCCACTCTGGAGAG 60 22081811 22082011 GGTGCCATATTTCTTGTACCTG 60 NA Rattus norvegicus 81 Lipt1 ENSRNOG00000018464 ENSRNOT00000024896 1 1 1 90 9 44466669 44466687 CAAGTGCTCTAGGTCCCAC 60 44466741 44469368 GGAATTAGCATGCTGCCAC 60 NA InUTR Rattus norvegicus 81 Polr2a ENSRNOG00000028834 ENSRNOT00000068013 1 1 1 80 10 56350768 56350787 TCCATTGCAGATTCCAAGAC 58 56350575 56350730 CTCAATGACCTCTATTACATCCTG 59 NA Rattus norvegicus 81 Pfdn5 ENSRNOG00000012985 ENSRNOT00000017794 3 1 1 80 7 143925361 143926966 TGACGAGTTCTATGTATGTCC 57 143927008 143927026 CCACGTAGTAACCAGTTCC 58 NA Rattus norvegicus 81 Paox ENSRNOG00000018838 ENSRNOT00000064501 2 1 1 82 1 212601204 212601225 GAGTTTATGGAGACTCTGTCAG 58 212601267 212602080 AATTGTGGGTTTCCTGTCAC 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809,ENSRNOT00000080174 2 3 5 80 20 4816883 4816904 AGATTTCCTACTTAAGCCAGAG 57 4816164 4816842 CATTCATGCTGGACCTCTG 58 NA Rattus norvegicus 81 Defb22 ENSRNOG00000007525 ENSRNOT00000009913 2 1 1 94 3 147962146 147965792 CTTGGTCACAGGTAACTGGT 60 147962071 147962089 CAGGGTCTGTCTGGTACTC 59 NA Rattus norvegicus 81 Htr3b ENSRNOG00000006920 ENSRNOT00000009574 3 1 1 80 8 53258230 53258250 TTTCTGTGACCTCCACTTACC 60 53250068 53258191 TGCGAATCACTACATTAAACCG 60 NA Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 1 1 1 115 7 80796065 80796083 TAGACACAGAGGACAGTGG 58 80793181 80795986 GTATCTGTTTGCCTGGGAG 58 NA Rattus norvegicus 81 Proser3 ENSRNOG00000024625 ENSRNOT00000032363 2 1 1 80 1 89004454 89004472 GTACCACTGAGGGACAGAG 59 89002043 89004411 GGTTTATGTACTTGGCCACC 59 NA Rattus norvegicus 81 Tmem167b ENSRNOG00000042160 ENSRNOT00000023728 1 1 1 61 2 211349065 211350216 TTACAAAGCTGCTGTGATTGG 60 211349024 211349042 TTACGATGCAGGCAATTGC 60 NA DesignRelaxed Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 3 2 2 80 5 57001657 57001676 TAGAAGCTGTTGTGATTGGT 57 56999847 57001616 CTTTCAACTGTACTTGCTGTC 58 NA Rattus norvegicus 81 Fstl4 ENSRNOG00000006565 ENSRNOT00000067809 1 1 1 80 10 38419453 38419471 ACCTCCTGAGATTTGACGA 58 38419515 38476852 GTTGAATCACCTGGAAGGC 59 NA Rattus norvegicus 81 Fstl4 ENSRNOG00000006565 ENSRNOT00000067809 2 1 1 80 10 38419453 38419472 ACCTCCTGAGATTTGACGAC 60 38419515 38476852 GTTGAATCACCTGGAAGGC 59 NA Rattus norvegicus 81 Lysmd4 ENSRNOG00000050624 ENSRNOT00000075131 3 1 1 90 1 128200419 128202369 CAGTATGGCTGCAAAGTCG 59 128202418 128202441 CTGGAATCTTGATCGATTTCAGAG 60 NA Rattus norvegicus 81 Fam47a ENSRNOG00000003836 ENSRNOT00000005141 1 1 1 60 X 45965529 45965547 GTTTGTGAAGGAAGGGCTG 59 45965568 45965589 GATCATACCTTTACTAGGCGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf12l2 ENSRNOG00000031533 ENSRNOT00000047171 2 1 1 60 X 130824162 130824182 TCTACCACCACATCATCACTG 60 130824122 130824143 CGGATATCATAGAAGAGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad21 ENSRNOG00000004420 ENSRNOT00000006209 3 1 1 80 7 91522378 91524490 CACTGCCAGACTTAGATGAC 58 91522317 91522340 CTCTCATGGTTATCTCTTCTACTC 58 NA Rattus norvegicus 81 Usp27x ENSRNOG00000002844 ENSRNOT00000003800 3 1 1 60 X 15989293 15989311 TCTGGAAACCCATCTCCTC 58 15989335 15989353 GAGCATGAATCCACACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE3 ENSRNOG00000031607 ENSRNOT00000050099 3 1 1 97 20 4932633 4932652 CATTATTGGAGCTCTGGTGC 59 4932195 4932397 GAGCTGTCAACTAACCTGGA 60 NA InUTR Rattus norvegicus 81 Galp ENSRNOG00000022129 ENSRNOT00000034854 2 1 1 81 1 71354727 71354745 TTATTCCCGCTCTCCAAGG 59 71352667 71354682 CACTATGCGCAGATCTCCA 60 NA Rattus norvegicus 81 Rab21 ENSRNOG00000003923 ENSRNOT00000005258 1 1 1 80 7 58273669 58274619 ACCTTGCTATATGGGATACAGC 60 58273610 58273629 TAGCTCCATTCGAATCTCGG 60 NA Rattus norvegicus 81 Sar1b ENSRNOG00000004820 ENSRNOT00000006567 3 1 1 93 10 37236865 37242262 CATTTGCAAGCCCGAAGAG 60 37242317 37242337 CTAACAGCCTTTCATGGTCTG 59 NA Rattus norvegicus 81 Hmg20a ENSRNOG00000016905 ENSRNOT00000022976 2 1 1 81 8 61136602 61136623 CCATTTCCAGAAATCACAAGGA 59 61136665 61141131 CTTCATCAAGGTAGCGCTG 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893,ENSRNOT00000081376 3 2 2 80 3 5830864 5830884 TTTCAGTTCTTCTGCAAGACG 59 5829402 5830823 TGGCTTGATGTTTGACATGG 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000051016 ENSRNOT00000074521 3 1 1 83 2 36093345 36093363 TCTCAGCAACATGAAGCCA 60 36093410 36094991 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Slc25a11 ENSRNOG00000003815 ENSRNOT00000005144 1 1 1 80 10 57266557 57266575 GAGCTGTTGTCGTCAATGC 60 57266411 57266514 CAGAGAAGTAGCCTGAGTCC 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 1 2 2 80 8 59582909 59584576 CTGGTTGAAGCAGGAATGG 59 59584614 59584638 GGAACACGTATAATCTTTATCCCAC 60 NA Rattus norvegicus 81 Dnai2 ENSRNOG00000024523 ENSRNOT00000038852 1 1 1 80 10 103287035 103287054 ATGGACATCACCAGAAAGGA 59 103287097 103292220 CTTGGTTGGCAAGGTAGAC 59 NA Rattus norvegicus 81 Serpinf2 ENSRNOG00000003233 ENSRNOT00000004322 1 1 1 80 10 62266307 62268851 CCTGAGATACAGGTGGCTC 59 62266245 62266264 GTTCCACCCAAAGTAAGTGG 59 NA Rattus norvegicus 81 LOC100912488 ENSRNOG00000048854 ENSRNOT00000040431 1 1 1 60 8 42323551 42323570 GCGATTTCTCTGTTCTTTGG 58 42323590 42323611 ATTCAGCAGAAGATGGTTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ficd ENSRNOG00000059799 ENSRNOT00000082809 1 1 1 116 12 48662167 48662931 ACTGGAGCCACAGATTCTG 59 48662069 48662087 CATTTGGGTTCAGCCACTG 59 NA InUTR Rattus norvegicus 81 Fam64a ENSRNOG00000008040 ENSRNOT00000010975 2 1 1 94 10 58614402 58614420 GGAAACTCCAGAGCCAGAG 60 58614478 58616134 AGGACTCCTGGATCCTCTG 60 NA Rattus norvegicus 81 S100pbp ENSRNOG00000007099 ENSRNOT00000009436 2 1 1 80 5 147336898 147340923 TCTTACCACACGAAATTATGCC 59 147336839 147336858 TTGTTTCTGTCAACCCACTG 59 NA Rattus norvegicus 81 Ctdspl ENSRNOG00000046257 ENSRNOT00000075793 3 1 1 170 8 127712685 127716174 ATACACCAGGTGTACGTGC 60 127719867 127719886 GGATTCTCTGAAGAGTCGGG 60 NA InUTR Rattus norvegicus 81 Esyt1 ENSRNOG00000060753 ENSRNOT00000082107 3 1 1 80 7 2934912 2935007 TGGATCAGGTTCTACAGTGG 59 2934851 2934871 CCAAGTAGACAACAAGGATGG 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000084938 1 1 5 60 20 4420936 4420955 TCTATGTTGTCTCCTTCCGA 58 4421108 4421126 GTCTTGTTGTGGCTGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 3 2 2 80 14 86112389 86112623 TGACGGAGTAAGGTTCCTG 59 86112327 86112346 TCTAAATGGTCCTCCATGCT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 1 2 4 80 8 39186416 39187752 CAAACCACTTAACAGAGGAGC 59 39186356 39186379 TGCTTAGAGAATCCACTAGAAGAC 60 NA Rattus norvegicus 81 Kdm2a ENSRNOG00000019145 ENSRNOT00000054850 3 1 1 80 1 219578560 219578917 AGTGCTTAGCACCTAGACTG 59 219578499 219578520 AGTCCTGTGTCTCTTCATTCTG 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 1 2 4 80 14 84316024 84316770 GAGGCTGGTGTCTATGTCC 60 84316814 84316832 CACTTCAACCGTGAAGCTG 60 NA Rattus norvegicus 81 Sapcd2 ENSRNOG00000013069 ENSRNOT00000017466 2 1 1 81 3 2596061 2596156 TTCTCACTCAGGAGGTGAC 58 2596201 2596219 AACAGCTGCTTGATGAGTG 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000077863 3 2 6 110 5 158125983 158126002 GTGTACTCAGCAGTTTACGC 59 158126075 158127824 GATCTCCCTGAGTAGCTGC 59 NA Rattus norvegicus 81 Ufsp2 ENSRNOG00000012087 ENSRNOT00000016723 3 1 1 80 16 49471333 49471351 GTCTGCTCATGGTTCAGAC 58 49471067 49471289 ATCAACTAGAGCCTGCTGG 59 NA Rattus norvegicus 81 Echdc1 ENSRNOG00000011622 ENSRNOT00000015440 2 1 1 83 1 30906419 30915730 GAATGCTTTCTCAGGTGCC 59 30906354 30906372 ATGAGGCCTTTCCCTTCTG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 1 6 8 81 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365874 4365892 TTTCCGCTTCCTCTGACTG 60 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 3 2 2 81 3 153224177 153224195 CCTGTACGAGATAGTGGCT 58 153222821 153224133 AAGATGGTGACAGTCTCTGG 59 NA Rattus norvegicus 81 Mir26a ENSRNOG00000035582 ENSRNOT00000053705 1 1 1 60 8 127714452 127714475 CTTGTTCAAGTAATCCAGGATAGG 59 127714492 127714512 CAAGTAACCAAGAATAGGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 2 2 2 80 2 45192568 45192587 CTCTGTTTGTGACCGTTGAG 59 45192630 45206815 AATTCACCCACACCTGGAG 60 NA InUTR Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 2 1 1 80 8 23439176 23439196 GACCCAAATACAAGATGGGAC 59 23439237 23446010 TCTTCGTAAGATACCTGGCT 58 NA Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 3 1 1 80 8 23439176 23439195 GACCCAAATACAAGATGGGA 57 23439237 23446010 TCTTCGTAAGATACCTGGCT 58 NA Rattus norvegicus 81 Mrps22 ENSRNOG00000047984 ENSRNOT00000070953 3 1 1 80 8 106609712 106610223 AGAACCTTAAGACCATGTACAG 58 106609653 106609671 TGGAATCTGGCTCAAACTG 58 NA Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 2 1 1 60 8 43349795 43349814 AATATTGTCTCACCCATGCT 57 43349834 43349855 TCTTCACTTCCTTATTCCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf4 ENSRNOG00000014777 ENSRNOT00000019910 3 1 1 81 5 78276255 78276274 TATTGAAGGCCATACAGTCC 57 78276318 78279042 ACGGTCATAACAGGTTGTG 58 NA Rattus norvegicus 81 Itga1 ENSRNOG00000053550 ENSRNOT00000086114 3 1 1 80 2 47153790 47161285 CAGTCCACGAACACATTCC 59 47153728 47153747 TGGACACATTCAGAGTGAGG 60 NA Rattus norvegicus 81 Sfxn4 ENSRNOG00000036572 ENSRNOT00000054674 1 1 1 80 1 282225967 282225985 CCATCGAGGAATTGAGGTG 58 282219230 282225926 TCTTTAATAGCCTTTCTCCCAG 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 3 1 1 60 8 43534484 43534536 GGTAAAGCTGAAGACAAGGAG 59 43534444 43534462 TGTCCTTAACCAGGTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Sacm1l ENSRNOG00000005149 ENSRNOT00000007223 2 1 1 80 8 132607229 132618253 ATCTGAAGCTGCATATTACACC 59 132618289 132618312 GGTCAATGATGAGTACATCATCTG 60 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548 3 1 2 80 20 4487970 4488088 CCTTTCTCAGGTTCTTCCC 58 4487908 4487927 CCTGCATTACGATATGGTCC 58 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 1 2 2 80 8 22800761 22800780 CCTCATATCAGCATGCTTGG 59 22799854 22800719 TAAGCCACTTTCAGTTCTCG 58 NA Rattus norvegicus 81 Dbndd2 ENSRNOG00000014571 ENSRNOT00000019688 2 1 1 88 3 160936348 160936369 ATTTATTGACCTTGCGGATCAG 59 160936418 160937843 CATCCACTCCAGACCTCTG 59 NA Rattus norvegicus 81 Cenpk ENSRNOG00000039740 ENSRNOT00000060962 1 1 1 80 2 34333970 34335211 ATGAAATGTTAGAGGTCCCAC 58 34335251 34335271 TCTTCAAGAAAGTCTCACTGG 58 NA Rattus norvegicus 81 LOC102550797 ENSRNOG00000047861 ENSRNOT00000075593 1 1 1 80 8 40879641 40880375 GCAACATCTGGTCTCAGGA 59 40879579 40879599 AGCAACCTATTCTTCAGGAGG 60 NA Rattus norvegicus 81 Bcar3 ENSRNOG00000013737 ENSRNOT00000065111 3 1 1 80 2 226672902 226672920 AACTGAAGGACACCATGGG 60 226672962 226674403 CTAACCTTGTGATCTGAGGCA 60 NA Rattus norvegicus 81 Ptk6 ENSRNOG00000012987 ENSRNOT00000017337 2 1 1 80 3 176700044 176700063 AAGGAACGTTCTCGTTACTG 58 176699488 176700001 TAGATGTCCTCCTTGACGA 57 NA Rattus norvegicus 81 Padi1 ENSRNOG00000007067 ENSRNOT00000009921 2 1 1 80 5 159358301 159371102 GATGTGTACAGTGATGTGCC 59 159358240 159358262 GTAGACCATGTAGATCTTCACCT 59 NA Rattus norvegicus 81 Olr1327 ENSRNOG00000052227 ENSRNOT00000092067 2 1 1 60 8 43747953 43747974 ATGTCCTATCAAGTCTGTTCCT 59 43747994 43748013 CACCAATCAAAGCCATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fer1l4 ENSRNOG00000019467 ENSRNOT00000026451 2 1 1 80 3 151594031 151594225 TGGAAATAACTGCTTTCCACTC 59 151593972 151593991 CCATCCCTAAGTCCATCCTG 59 NA Rattus norvegicus 81 Fer1l4 ENSRNOG00000019467 ENSRNOT00000026451 3 1 1 80 3 151570325 151570493 ATCCCATCTTTGGAGAGGTC 59 151570264 151570284 CATGGTCAAATATGGCCACAG 60 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 1 2 2 80 20 4379800 4379996 TCAAAGAAAGTTTGGGAGTGTG 59 4379741 4379760 ACACTGGTTGACTGTAGGAC 59 NA Rattus norvegicus 81 Adgra2 ENSRNOG00000012991 ENSRNOT00000017776 1 1 1 80 16 69107618 69118386 TGGAGAAGTTGGACCTGAG 59 69107556 69107574 ATCGTTTCAGCTCTCCCAG 60 NA Rattus norvegicus 81 Akna ENSRNOG00000008005 ENSRNOT00000010516 2 1 1 80 5 79196416 79197010 CTGCTATCCAGGAGGATAAGG 59 79196356 79196377 TGTATCTATTTCTGGCCATGGA 59 NA Rattus norvegicus 81 Aknad1 ENSRNOG00000028025 ENSRNOT00000033443 3 1 1 80 2 211551299 211554877 CAAATACAGGTGCAGCCTG 59 211555082 211555102 CAAATCCAAGCACCCTTTCTC 60 NA Rattus norvegicus 81 Ppp2cb ENSRNOG00000015182 ENSRNOT00000020663 2 1 1 81 16 62277582 62277603 GAAACATTTAACCATGCCAACG 60 62275808 62277544 CATGGCACCAATTATATCCTTCC 60 NA Rattus norvegicus 81 Ascc3 ENSRNOG00000037604 ENSRNOT00000057016 2 1 1 80 20 55405684 55405702 CTACATCAGCCGAGGAGAG 59 55405744 55409741 ACAATTCTAGCTGCATTCTGG 59 NA Rattus norvegicus 81 Ccr8 ENSRNOG00000026759 ENSRNOT00000029766 3 1 1 60 8 128781762 128781780 CCCTCATGAGTGTGGACAG 60 128781803 128781822 CTCACTTTGATGGCATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 3 1 1 60 20 42842775 42842794 CTGCATCATCAAGGGAAAGG 59 42842817 42842835 AGTGGTGCATAGCTTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1702 ENSRNOG00000050738 ENSRNOT00000041697 2 1 1 60 20 1111152 1111171 GACCACTTCACTATGCTACC 58 1111193 1111212 GCTATTCCTGCAAGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3 ENSRNOG00000001217 ENSRNOT00000001632 2 1 1 60 20 11490249 11490269 ATGTAGTGTACTACGTACGCC 60 11490291 11490309 TTGAGGTACTCCAGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500567 ENSRNOG00000026676 ENSRNOT00000030881 3 1 1 83 5 153976730 153976749 GCATCAGAGGAATGTCAAGG 59 153976795 153977552 CTTGCTCCAGAGATCCCTC 59 NA Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 1 1 1 60 20 915293 915314 CATCCTTCTCTGTCACAATTCC 59 915335 915353 ATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sobp ENSRNOG00000000316 ENSRNOT00000000348 3 1 1 82 20 47893698 47893716 AAAGGACCATGGCAATGTG 59 47860757 47893653 TTGACACCTCATCTTCTGCT 59 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462,ENSRNOT00000010440 3 2 2 80 5 128656356 128656375 CCAGTTCTTCATCCATCCAC 58 128656417 128659612 GCAAGCTGATACTCACTGTC 59 NA Rattus norvegicus 81 Gm10100 ENSRNOG00000033928 ENSRNOT00000045125 1 1 1 127 20 11612394 11612412 CAGTTGCTCTTCAGGTTGC 60 11612503 11612521 CAGGAACACATATGGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 1 1 1 76 16 75227604 75241243 GTTGCTGGAATTCTAGGACC 58 75227547 75227566 TTGAGACAGAACCCTTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126,ENSRNOT00000079020 2 2 2 80 3 52599716 52599737 CCCATTAAATCTCTACGGACAC 59 52597803 52599675 GACCACTACCCTCATTCCT 58 NA Rattus norvegicus 81 Cyp4v3 ENSRNOG00000042426 ENSRNOT00000019302 1 1 1 80 16 50126710 50132474 CCTTCATGTTTGAGGGTCAC 59 50132516 50132535 GGACTTCTGGATTAGAGCCC 60 NA Rattus norvegicus 81 AABR07050407.1 ENSRNOG00000025261 ENSRNOT00000045406 3 1 1 102 5 164033209 164059613 GGATGCAGGGTTTCTTAACC 59 164059676 164059696 ATTACATCCATGTACAGTGCC 58 NA InUTR Rattus norvegicus 81 Defal1 ENSRNOG00000029462 ENSRNOT00000049394 3 1 1 81 16 75367198 75367791 AAGATTTACGCGTAAGAAGGAC 59 75367833 75367851 CTTGATAGCCGAATGCAGC 60 NA Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 2 2 2 62 5 78262703 78262721 AGCTCGATGACATTGAGGA 59 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 1 2 2 80 3 172177593 172177611 GCAGCATTTCTTCGACACC 60 172177655 172178006 TCATCCGTGAAACCCTGAC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 2 2 2 80 3 172174696 172175474 GACGGAGTAGACGAAATACAG 58 172175515 172175534 ATGCTTATCATGAAGGCTGG 58 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769,ENSRNOT00000081338 1 2 2 80 3 66675268 66675288 CCCTTGTGATTCTCAATGAGC 59 66719385 66722391 ATGCATTCTGGGATTCTTGTG 59 NA Rattus norvegicus 81 Aadacl3 ENSRNOG00000026613 ENSRNOT00000033150 3 1 1 87 5 162330241 162330837 TCAGTTGGATACAGAAAGTCTC 58 162330884 162330903 ATGATCTCAGAAAGTGGGTG 57 NA Rattus norvegicus 81 Nr4a3 ENSRNOG00000005964 ENSRNOT00000008302 1 1 1 80 5 63793211 63793230 ATCTGTATGATGAACGCCCT 59 63793273 63804038 GGTGGGACAGTATCTGGAG 59 NA Rattus norvegicus 81 Syf2 ENSRNOG00000060597 ENSRNOT00000091494 2 1 1 90 5 153269939 153272651 CTGAAGCGGAATGAAGCTC 59 153272705 153272723 TCTTGGCTTCCCAGTTAGC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000085378 2 3 4 83 5 160361430 160362978 GACATGCAGATATGGCATACAC 60 160363022 160363040 AGGAAGGGCAGAAGTTCAC 60 NA Rattus norvegicus 81 RGD1559811 ENSRNOG00000013740 ENSRNOT00000018362 1 1 1 127 16 74962919 74962937 AACAAGAATTGAAGCCCGC 60 74960523 74960541 TTTGCTCACCTTGAAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp703 ENSRNOG00000014199 ENSRNOT00000019002 3 1 1 115 16 69241827 69241845 GGGTCCTGAAGATGCTGAG 60 69240766 69240784 CAAAGGACTCTTCTTGGCG 59 NA DesignNoJunction Rattus norvegicus 81 Bpifa1 ENSRNOG00000013859 ENSRNOT00000018581 1 1 1 80 3 149627010 149627308 CTCCAAGTGAATATGCCCG 58 149627352 149627370 CATGGCTACAATCTCTGCG 59 NA Rattus norvegicus 81 AABR07072894.1 ENSRNOG00000055818 ENSRNOT00000085004 2 1 1 80 3 78263325 78263347 TGTACCCACTATTGCTTGCA 60 78263264 78263283 CCATACAGATTGCTCCACCA 60 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000009930 1 1 2 80 3 148082844 148091380 CTCACTCCAGGTGATGCTC 60 148091424 148091442 ATAGACGCTTTCCTTCCGG 60 NA Rattus norvegicus 81 Rims4 ENSRNOG00000010868 ENSRNOT00000014498 3 1 1 96 3 160242026 160244158 AAAGTCCTGCAGGTAATTGTG 59 160241950 160241968 TCAAGTCCAGTTCCTCCAG 59 NA Rattus norvegicus 81 Ppdpf ENSRNOG00000012722 ENSRNOT00000017319 3 1 1 157 3 176691483 176691573 GACTACTATCGGCGACGTC 60 176691824 176691842 AATGGGAGGGTGGATTTCC 59 NA Rattus norvegicus 81 LOC688765 ENSRNOG00000032376 ENSRNOT00000042908 1 1 1 60 16 58731251 58731269 ATCAACCACCTCAAGAGCA 59 58731209 58731227 GGTGTCTAAGGTCGGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 2 2 2 116 3 161021668 161024021 CCAAATTCTGAGCTTCAGCC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Ankle1 ENSRNOG00000017156 ENSRNOT00000023065 3 1 1 85 16 19803367 19803385 CTCTACACTGCTTCCAGCA 59 19803434 19803637 CAGTGTCTGGAGACCTAGG 59 NA Rattus norvegicus 81 Atp4b ENSRNOG00000018543 ENSRNOT00000025958 2 1 1 95 16 81139506 81139524 TACAGAATTGCTCAGGCCT 59 81138524 81139448 GCAGGAACTTGACAATCCTG 59 NA Rattus norvegicus 81 Cars2 ENSRNOG00000014526 ENSRNOT00000019993 3 1 1 80 16 83290736 83290755 TGGATGCAATGTTGTCATGG 59 83290797 83297374 GACACGTTCATCTCGTTAGC 59 NA Rattus norvegicus 81 Erich2 ENSRNOG00000056087 ENSRNOT00000077551 2 1 1 80 3 56815876 56816105 GATCCAAAGGAGAAACTGATGAG 59 56820132 56820150 GGACAATCTTGGTCTCCGT 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435,ENSRNOT00000084866 2 2 2 80 3 155304313 155304333 CAACCGTCATTTACAATCCCT 59 155304374 155308531 GGTTCCTAAGCTTGAACACG 59 NA Rattus norvegicus 81 Ikbkb ENSRNOG00000019073 ENSRNOT00000025851 3 1 1 80 16 74177651 74177669 TGGGAAATGAAAGAACGCC 59 74177711 74188907 AATTTGTTCACCTGTCACCTG 59 NA Rattus norvegicus 81 Bpifb3 ENSRNOG00000013398 ENSRNOT00000055349 3 1 1 80 3 149415367 149415386 TGGAGGTTGGAATACCTCTG 59 149415429 149416235 CGACCGCATTCTCAATGAC 59 NA Rattus norvegicus 81 LOC100359503 ENSRNOG00000046342 ENSRNOT00000045955 1 1 1 60 16 70644561 70644580 GTGCGAGTGGAATTTATGGA 58 70644603 70644621 CAGGGCCTTTGAAGTTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677,ENSRNOT00000063906 3 2 2 80 3 159321937 159321956 ATAGCACAGTCAGGCTTCTG 60 159321998 159322313 ACTCGTTTATCCGGAACCTC 60 NA Rattus norvegicus 81 Dpm1 ENSRNOG00000010993 ENSRNOT00000016150 2 1 1 80 3 164969140 164969158 GGCTACGTCTTTCAGATGG 58 164968212 164969098 CACAAATGAAATCGGAACCTC 58 NA Rattus norvegicus 81 Zfp964 ENSRNOG00000042504 ENSRNOT00000066776 3 1 1 60 16 21472819 21472839 AGACTCACACTGAAGACAGAC 60 21472779 21472798 TAACACTCGAAAGATCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nat3 ENSRNOG00000029977 ENSRNOT00000043305 2 1 1 60 16 23903651 23903672 CAATCATCTTCTTTACTGGGCT 59 23903612 23903632 TCCTCCTAACATTGTGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F10 ENSRNOG00000033444 ENSRNOT00000026677 1 1 1 80 16 81812847 81813839 AATATGAAGATGGTGACCAGTG 58 81812788 81812807 ATGTATAACTCCCAAGGCCA 59 NA Rattus norvegicus 81 Defb39 ENSRNOG00000034275 ENSRNOT00000040406 2 1 1 80 16 75042633 75046167 CAGATCAACTCAGTGTCTGGT 60 75046209 75046227 ATATGGGCATCGGATGGTG 60 NA Rattus norvegicus 81 C1qtnf4 ENSRNOG00000009140 ENSRNOT00000012110 1 1 1 120 3 79717498 79717522 GTAAACATAGGCGACTTCGAC 59 79717604 79717622 TCATCAGCTTCACCGACAG 60 NA Rattus norvegicus 81 Smim18 ENSRNOG00000049689 ENSRNOT00000074543 2 1 1 60 16 62153914 62153935 GTTCATATTTACTGTGGTGTCC 57 62153953 62153974 GCAGTCAAGTACCTCATAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909556 ENSRNOG00000045875 ENSRNOT00000072097 3 1 1 110 12 20809021 20809596 ACCCTAGTAAGGCTCCTCC 60 20808929 20808949 TAGAAGACATGGAAGGCTGTG 60 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 1 2 2 80 15 36581668 36582521 CGGGATCAAGGTTATCATGG 58 36582562 36582582 GCCGATATGATTCCTACACTC 58 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000084758 2 1 2 147 8 64184098 64190009 TTTGGAATGTCCCAAATGCC 60 64179763 64183989 GTTACAGTTGTACCAGGCAG 59 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000080677 2 1 2 84 2 56123074 56123092 ACATCTCAGCCAACAACAG 58 56121597 56123027 TCATGGACTTTACCATGTCC 57 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943 2 1 2 81 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138352975 138353584 TGGGAACATTCTCAATCTTCCT 60 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 2 2 5 80 X 26443840 26443954 ACTGCATTAGTGCTTACCC 58 26444267 26444286 CATGGGTTCGTAACCATAGG 58 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962 2 1 2 87 15 38113513 38115028 GGGTGAATACATCAGAAGTATTGG 59 38113449 38113467 TTCACTGTCCAACAAACGG 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000014820 1 1 2 163 15 38117329 38117347 ATTGGCGACAAGTCTTTGG 59 38113895 38115016 CCTCTGCAGTTTAGATCTTCTG 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395 3 1 2 80 X 31179222 31179240 CAGTCTGATGCTGAAGGAC 58 31179282 31180272 AGTAAGCGATTGAGTTGTAGG 58 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000085690 1 1 2 80 2 188330260 188330283 GAAGAAAGAGAAGTTGGAGTACAC 60 188330319 188339651 ACGTAGACATCAACATGAATGG 59 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 3 1 1 60 2 193429284 193429304 CTGGAATATGAGTTTGCCGAC 60 193430060 193430078 CTTCATCCACAGTTGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000011317 1 1 2 81 X 1766251 1769880 GAGCAAAGTGCAGAGATCC 59 1766188 1766206 AGGATTTGTTCCGCATCAG 58 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 3 2 2 80 2 43290924 43290943 ACGCTACGATTACTTTGCTC 59 43290985 43291084 TCCATATAGTCCGTAACGCC 59 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000086721 1 1 2 80 X 29639647 29639667 CTCAAAGAACCATCAGTACCG 59 29621492 29639605 CATTCGAAGCAACCTGGAC 59 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474 3 1 2 81 4 179412626 179417762 CAGAAACAAGTGAGGAACTGAG 59 179427530 179427548 GGAGGAGTGGAAACCTCAG 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076756,ENSRNOT00000018532 3 2 3 82 1 178391390 178391408 CTTGCAGATCTCGTTCCTG 58 178391451 178392029 TTTCTTGGTCTATTAACTCCGG 58 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567 1 2 3 80 15 43020548 43020568 GAGACAGTGTAGGAGGAAAGG 60 43020610 43020949 ACCGTATCTGCCTGTTCTC 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 1 1 2 92 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212087 263212105 TACTTGACCTGTTGAGCCA 59 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 3 1 2 60 X 58181490 58181509 AACATTCAGGCACTAATGGT 58 58181267 58181286 TAACTGATGCATTGGACCAC 58 NA DesignNoJunction Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 3 2 2 98 1 222319567 222319588 AGTATAAGAAGGACAAGCAGCT 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000087898 2 1 2 80 X 40287437 40294559 GAAGAGGCTGGTATATGGC 58 40294602 40294621 CAAGAGGATTACTGGGAGGA 58 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000087898 3 1 2 80 X 40287437 40294560 GAAGAGGCTGGTATATGGCA 59 40294601 40294621 CAAGAGGATTACTGGGAGGAG 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000024733 2 1 3 98 9 94964407 94964425 CTAGGAGAGCTCACATCCA 58 94971878 94971931 TTCATCCTGGACACTCTGG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000084023 2 1 2 81 2 196013862 196013883 AATCAGTGATGTCATTGAGGAC 59 196013924 196019984 GACCAAAGTATTACCAGCGG 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000050010 1 1 2 100 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224321274 224340267 TAGCTGTTGCCCTTAACGT 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408 3 1 2 100 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224320085 224340269 ACTCTTTCCAACTTAACGTGG 59 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990 2 1 2 139 1 222530213 222531203 TTTGTCCGCAGAAATCTGTC 59 222527594 222527612 GCCTCCCGAAATTCTTCCT 60 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797 3 1 2 80 17 39509595 39510953 CAACATTCCTTCTGCAAACTC 58 39510995 39511013 ACATGCAGGAATTGATGCA 58 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000088327 3 1 2 120 2 188226433 188227395 ATGAGAAAGGCAGCATCTC 58 188226331 188226350 ATCAAATCTGGCCTTGAGAG 58 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000009802 3 1 2 94 X 39948657 39951445 CTTTAAAGGCCAGAGAAGGG 58 39951501 39951520 CATCTGCTTCCATTGTTGGA 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000015578 1 1 5 80 7 115787299 115787318 AACCAGACTTGTATCCTGTG 57 115790061 115792637 ATTCCATAACCTAGGGCCA 58 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 1 1 1 65 4 120157484 120157502 GAACGGACATGAACGTGTG 60 120159004 120159022 GATCTTGGGATACCTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 3 2 3 80 5 48058407 48058425 GAATGTCTGAATCGCCTGC 59 48057249 48058365 TTCATCCACCAATGACATCTG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 3 2 2 80 10 18084110 18084785 AGGTCAAAGGGTCAAGAGTC 59 18084049 18084070 AATGTCTTCTACAGAGCTAGGT 59 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591 2 1 2 80 10 18082220 18082238 CTCTTCCCAAAGTGGAAGC 59 18081283 18082177 GATCTTGAATAGCCTCCTGG 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000087153 1 1 4 91 1 216566192 216575289 GGAAGACAAGGGAGACCAG 59 216575342 216575362 CCTCGTATTCCTCTTCCTCTC 59 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 2 1 2 83 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715991 38716011 TTTAGCTCTCATAGCAGAGGC 60 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 3 2 2 80 1 83210491 83210509 TTCTCCAATGGGTTTGCCA 60 83210552 83210738 TACACCTCAGTGTTCTTGGG 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709 1 1 2 85 6 60774236 60776007 TGAGAAAGCTGTGAATCCC 58 60776056 60776074 TAAGTTTCCCACTGTCCGA 58 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709 3 1 2 86 6 60774235 60776007 CTGAGAAAGCTGTGAATCCC 59 60776056 60776074 TAAGTTTCCCACTGTCCGA 58 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846 2 1 2 80 5 24599347 24602719 AAGTTACCATGCCTGTCTCC 60 24599286 24599305 CTGATAAATGGCAGCTTCGG 60 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000065211 3 1 2 96 2 187282004 187282026 CTGATGTCTCCCAGTCCTC 59 187282086 187282104 GCATTGCCCTTCTTGTCAC 60 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234 3 1 2 83 2 187275409 187275428 CAGAAAGAGTACAAGTGCGG 59 187275474 187281075 AGGCATCTCATCAATCCGG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386 1 3 10 80 2 231232010 231232932 TGTCAGAGGTGACTTTGTCC 60 231231949 231231967 CTCTACGGCCTTCTACTGG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 1 2 10 80 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 2 6 7 103 1 215610835 215610853 GAACTCTGCAAACAACTGC 58 215610920 215611166 TTCATGTCTTCCAGCTCCT 58 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 1 3 3 88 10 4345458 4345477 TTTAAGGACAGCAGGAACCA 59 4345523 4445725 TGGTCTTACCTTCATCTCTTAAGG 60 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 1 2 2 80 1 164869915 164873138 CTGCCTCTAGATGTCTTTCAC 58 164873178 164873198 CACATAGACCATCTTGATGCC 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000087818 2 1 2 80 1 164913375 164913557 AAGAGAAGAGGGTTGCGAG 59 164913599 164913619 TGCGAATGAGGATATCATCCA 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 3 3 3 80 12 8091946 8091966 TTTGTGAAAGGCTCCATTGAG 59 8092007 8094726 CACGTTTGTGTCATTGTTCC 58 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000079947 3 1 3 128 4 157251836 157252564 TGTCTATAAAGTGGTTTCACCG 59 157251729 157251747 CTGAGAGGGAGAAGTCACC 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849 2 1 4 130 9 117636938 117647721 AGGAAGAGACTGACAGTGAG 59 117651180 117651199 TTTCACCAGCTCATCTTGAG 58 NA Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 2 2 2 80 7 15199961 15199981 GTCTTATTAATCTCCCGCTGC 59 15199808 15199920 GACACAGATGTTCCCTTTGG 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600 2 1 2 81 6 83426449 83426467 AAAGAGCACATACCAAGCC 58 83431900 83438231 TATATGGACTCCAGCCTCTG 58 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248 3 1 2 88 20 10438682 10440056 CATCTCTGAGGTCCGATCTG 60 10440107 10440125 GTACCTTCACGGTGAGGTC 60 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000079335 1 1 2 80 1 190592688 190592707 TACAGATACTGAGGGAACCA 57 190591277 190592645 ATCAGAACATCACCCTCCA 58 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000618 1 1 2 80 20 5975614 5975632 TGGATATTTGGTCCGTGGG 60 5975672 5983758 GATCAATATGGTCTGTACCAGGA 60 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000077185 1 1 2 175 10 39459276 39461609 TATGAGTGATGTTGAAGCTGGT 60 39462055 39463631 TATTGGAGACCCACTTGCAG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 3 2 2 80 15 48427741 48427761 GCTCTACAACTCCAACTACTC 58 48425582 48427700 AGGTAGGCGTAATACTTGTG 57 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 1 1 1 130 7 26144352 26144370 TTTAGCTGCTGCCCTAAGG 60 26141371 26141390 GTCGTGTTGAATCAGGAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 1 2 3 111 10 77755423 77763104 TTCCAGCGTTTCATGAACC 59 77765228 77765246 CAATGGCTGGAACGATGAG 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 2 2 2 80 12 2549754 2549772 GAGAAGCTGAAGAAACGGA 58 2549601 2549710 CAATGCTTTCACAATCGCC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967 1 1 2 83 13 96112231 96141611 CGTCTACGACATGTACTGG 58 96141655 96141676 CTGCCATATACTTCAATTCCAG 57 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 2 2 2 114 1 87046662 87047023 GGCTTCAAGACTGTGATCG 59 87047101 87047119 TCTTCACAGAATGCAGCTG 58 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505 1 1 4 81 15 51915323 51915347 CACAGAGATGTTGGTCAATATTCTC 60 51903552 51915284 AACTGAAGTGGCTCCTTCC 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000012948 1 1 3 89 15 45545051 45550201 TGTATGGATTCATCAACACCTG 59 45536002 45545001 CTTCTGCAGAAGCCTTCAG 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000080684 3 1 4 81 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534635 43537130 TGATGGAATTCTGTGCTTTCC 59 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000084304 1 1 2 81 17 16015793 16015811 AAGAGCAAATTGAAGGCGG 59 16015856 16016873 ACAAATGACCTGTGCTGGA 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 3 2 2 84 14 86377162 86379589 TCTCTAGAAAGGCTAAGAAGGTG 59 86377100 86377118 TTTGCTGTGGGTTTAGGCT 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373 2 2 3 80 5 142707165 142707183 GGTCGCTACCTTGATCTCC 60 142707222 142710283 GTATGTGATGTAATCCAGCTTCTC 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000010373 3 1 3 86 5 142717682 142717702 AGATTGAAGATGCTGTCTCCT 59 142721317 142722103 CATATTCTTCCTCGGTGTCAG 58 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 1 2 2 80 20 10759193 10794920 GTGGCTTCTGAGTGATCCA 59 10759131 10759150 ACGTCTGGTTCTAGAACCAC 60 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 2 2 2 80 20 10830405 10830425 CTGAGATTGGACTGTGAACAC 59 10820970 10830365 CAACTTCTCCTTCTTCTCCCT 59 NA Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 1 2 2 80 17 15691886 15691906 TGTCCTTATCAACACTCAGTC 58 15686210 15691845 TCCACATTCTGGTTGATCTC 57 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 1 2 2 80 13 99458244 99459399 GATCCACAGTCAGCAAATCAC 60 99458184 99458205 AGTGGTTGAAACAGAATCAGAG 59 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 1 2 2 80 5 115350462 115350480 GTGTAGACTGCCTCAACCT 59 115343914 115350420 TAGACATGATCTTGGGCAGAG 59 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 3 2 2 80 5 115371670 115387278 CCAATGATTAGGCAGAACGA 58 115371609 115371628 CTGCCTTGAGTAATCAGTCC 58 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000086560 1 1 2 80 19 19673486 19677320 GGAGGAGAGTCAAGGAGGA 60 19677361 19677382 CATGACACTGGAGATCTTTGTC 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054 1 1 2 80 5 33603247 33637907 GAAGAAGATAAACAGAGACTCTGG 59 33637943 33637964 TCTATCCTCATGTATCTTGCCA 59 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998 3 1 2 147 7 115908655 115908673 CTACAGACACAGCAGATCC 57 115908283 115908545 CACTGGTATGAATCACTGGG 58 NA InUTR Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310 1 1 3 86 17 23074729 23136875 TGTCTGAGAATCTTATGGCGA 59 23136923 23136941 TCAAGATGTCTCCCTTGCG 60 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 3 1 2 72 20 1815093 1815111 ATAGGCATGCTCTGATGCT 59 1814878 1814896 AACAGACTCAGTCCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056250 2 1 3 93 9 121862890 121873382 GTATCCAGGTATGGTAAACCG 58 121873437 121873455 TTCATGGAGGGATTCTGGG 59 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 3 3 3 93 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738154 97738173 CAGACCATGACATTCAGCTG 59 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 3 1 2 81 2 60562467 60562487 GCTCAGAAAGAAGTGGAACTC 59 60561385 60562426 GAAGACACATCACTCAACTGG 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472,ENSRNOT00000076353 1 3 4 113 19 758317 758338 GCTTCTTCAATAGTCTGTTGAG 57 760000 760019 GAACGTTTGACAACACAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 2 2 2 80 17 42736622 42736642 CTCTTTGACCATGCTATTGTC 57 42726718 42736581 AAATGCATACCCAAACTCCT 58 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 3 1 1 89 14 107349704 107349722 CCGAAAGAACAAGTACCGC 59 107349875 107349893 CTTTGAAGGATGGCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000042713 2 1 2 80 11 38677456 38678003 ACACAATATAATGCCGACCTC 58 38677396 38677416 GCTGACATTTCCTTCTTTCTG 58 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162 3 1 2 84 13 90275160 90276015 AAGGAGAGCAGATGATGTCTC 59 90276056 90276079 ATCATAGATTCTGGACTCTGTGAG 60 NA Rattus norvegicus 81 Tpk1 ENSRNOG00000029922 ENSRNOT00000048203 2 1 1 80 4 72874363 72874381 TGGTGTGGCCTTATTCCTG 60 72794799 72874321 CACATCATTTGTGAGGTTCCA 59 NA Rattus norvegicus 81 Pttg1ip ENSRNOG00000001223 ENSRNOT00000001638 3 1 1 88 20 11763523 11763541 TGGGTGATGTTCCTCAGTG 59 11758933 11763471 GTGTACTCAGAGCAACCCA 59 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 3 2 2 80 9 61922577 61922597 TAGAGATTGCACAAGATGGAG 58 61916075 61922535 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056 2 1 2 80 10 34957454 34957472 CAACAGCAGTATGGCTCTG 59 34956305 34957412 ATTTGTACTACCCTGACCTCC 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000004885 3 1 2 84 10 34956316 34956600 GGCTACGACTACAGTCAGG 59 34956250 34956274 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000031770 2 1 3 86 1 193239867 193246176 AGAATCGTCACTGACACCA 59 193239799 193239818 TTCTTTGCTTGCCAAGTCTG 59 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058834 3 1 3 121 X 36969077 36974124 TTGTTGTCACCATCTGATGC 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417 1 1 2 113 12 13101945 13101966 TGCCAATGTTATGGTAGATGGA 60 13102040 13109083 AAGAACACGTCTGTTTGCG 59 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 1 2 2 80 10 37069723 37069743 GTAAAGCAGAAGCAGATTCGT 59 37069783 37071923 CAAGACCATGATCCCTTTCTC 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 3 1 2 82 15 41104123 41104146 CAAACCTAGTAGGCTATCTACCT 59 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 1 2 2 80 1 219155226 219155245 AATTGAGTTCATCAACCGGA 58 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000085312 2 1 2 132 1 219162341 219181527 GACAAGGCAGAATGGACTC 58 219162227 219162246 TTGTTGTCTCTGAGGAAGTG 58 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489 3 1 2 93 4 176811203 176811758 AACCATAGCTCACCGTGTC 60 176811128 176811146 GTTTGGACCAGTATCGCAC 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042251 1 1 6 80 6 4315605 4315626 TCTTCATTGAGATTGGAGAACC 58 4303097 4311882 CATCGTACTCCTCTGTTAATGTG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 3 1 2 80 13 90521513 90521532 GGTACTCGATCTTATGCAGC 58 90522277 90527719 GAAGGTCCAGTGTACATCTC 58 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 2 2 4 80 1 267625417 267625437 AATCTACAGCATGAGGTTCTG 58 267625478 267627769 ATGATTTCATGCCTGATGCT 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 3 2 2 81 13 47296224 47296244 GCAAATGTTCACGATGTTCAG 59 47294582 47296181 AACATACCCTTTCGCATCC 58 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000027933 1 1 4 80 1 82331121 82338619 AAGCTGGACGTAATACATCTG 58 82329992 82330013 GAAGTTCAGGACAGAGTATGAG 58 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 1 1 2 80 8 55110322 55110340 TGGATCTAGAACGGGAGCT 60 55109474 55110281 AATTTGTCACCTCATCTGTGTC 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 1 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259353 52259371 ACCCTGAATCCAAGTAGCA 58 NA Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000066895 3 1 2 81 10 82492813 82492837 GTAAGAAAGACTTCTGAGTCTTTGG 60 82489529 82492775 CATGGTATTGTCTGCAGGGA 60 NA Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748 2 1 2 90 16 19366508 19369072 TGCAGATATGGGACACAGC 60 19363173 19363192 TCGTAGACCAGCATGATACC 59 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000082192 3 1 2 134 1 188693807 188693825 GCTTGGAGCAAAGATCCAG 59 188692426 188693709 CAGTTGGGATAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000081447 3 3 5 81 12 52398988 52399108 TTCTCAAAGGGCAACATTGC 60 52399151 52399170 GACAGTATGGGTCAGAGTCC 59 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000087194 3 1 2 99 9 66902391 66903406 GTGTAGTCCTCCAGGTGTC 59 66903469 66903487 AAGACTGTAGCTACTGGCG 59 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000055238 2 1 2 108 10 88952678 88952696 CAACTTTGGTGGGATCAGG 59 88952767 88959739 AAAGTCAAACTCTTCTGCGT 58 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000084678 2 1 5 114 X 64251121 64275842 AACAGAAAGGTGTCAACTCTG 59 64251027 64251045 AACACTTGAGACTGAGCGA 59 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000017243 1 1 2 80 8 123328891 123340924 CACTTACTACTTATGGGTGAAGTC 59 123328834 123328855 ATGTAGAAATACGACAAGCAGC 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005545,ENSRNOT00000088861 2 2 4 80 7 64769248 64775469 AGATAAATGCAGCTCATGTGTC 59 64775510 64775528 CCTCTGTGGTTTCAGTGTG 58 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000088757 1 1 3 80 20 2095464 2096767 ACCAAGGAAGGAGAATCGG 59 2096811 2096829 GTGTCACTTGACCACTCCA 60 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 3 2 2 80 11 61467130 61468656 ACATCTATCTGCATGTCCAG 57 61467069 61467090 TAGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 2 2 2 80 4 33750803 33750823 CAAATACCATCACTGTACGGA 58 33750510 33750761 TCTATCTCAAAGCCTGGGA 57 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000055127 2 1 2 157 3 163808771 163811819 TACCAACCACAGAGGTCCT 60 163808632 163808651 TGCCCATAGCCCTAAATCTC 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 1 2 2 80 10 83290704 83293634 AGCTGAAATGGTGTTTGCG 60 83293678 83293696 CCAACAACAGGTAGAGCGA 60 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 3 1 1 65 10 13000180 13000198 TCGGACAAAGCTGACTGAG 60 13001450 13001470 AGATTTGCAGACCAGTAGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 3 2 3 80 9 10710531 10710552 CAGGGACTTCAACAGATATGTG 59 10707666 10710490 TTGGGTGGGATGATCTTGG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 3 1 5 81 7 120772270 120772288 CTCGGTTGAAGAGTACGTG 58 120771876 120772227 CAAATCTCAACACCTCTTTCC 57 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 2 1 5 60 1 80531023 80531222 TTCCAAAGACAGTGTCTTGC 59 80530834 80530853 CTAAGTTGGGTCTGGAGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 2 2 5 81 1 80524477 80524496 CTATGGTGTGGACAAGAAGC 59 80524299 80524436 TTCAATTCCATGTGGATCAGAG 59 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136 1 1 3 80 10 42615749 42616242 GTTGACAGAAGAACCAGTTTCC 60 42618551 42618569 GATGTTGACAGCCGTTACC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000088654 3 1 2 266 13 99174516 99174534 GTCAGAGACCTCCAGTCAC 59 99175019 99175041 GTCACATCGAACTTCCAGC 59 NA DesignRelaxed Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 1 2 2 80 20 5804162 5805971 TTTATCAACCTGGAGGACGG 60 5804101 5804119 CAGGATGGTGTCATGTTGG 59 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 2 2 2 80 17 29646263 29646283 TGTCTGTGTACAATCACAGGT 59 29646322 29647503 TTCATCAAAGTAGTGACACAGC 59 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000081171 2 1 3 81 8 1586748 1586767 ATGAAAGTGGGAGGAAACCT 59 1554886 1586709 GGTTTACAGGAGTTCTTAATGAGG 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 2 2 2 80 4 148233572 148247007 ATCTTTAAGTGGTGGCTCTG 58 148247050 148247068 ATTTGTTGCCCAGAAGGAG 58 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000091532 2 1 2 81 9 14568129 14568843 CCAGCAAGTTACAGTCCCT 59 14568887 14568906 TCCTGTCTGAACGATCTGTG 60 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 3 1 1 70 14 87701356 87701374 AGGAGCACTTAACCGAGAG 59 87701052 87701070 TCCTGAAGAGACTGCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 1 2 2 80 10 82185688 82185872 CATCTTCCAGGTCATCACAC 58 82185627 82185648 ATGAAGTTGTAGAAGGAGTGAG 58 NA Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000092024 1 1 2 85 10 82144138 82146405 GAGAAGGAATCTAATGTTGGACG 59 82139448 82139466 AGTAGTAGGGCTTGCACTG 59 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000000053 1 1 2 80 13 89988831 89988850 GGATCTTCCTCAGATGTTCG 58 89988892 89990370 AGACCTGTTGATGAACTGGA 59 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853 1 1 2 80 12 19581315 19581334 ACAGATGAGGTCATCTTCCC 59 19581153 19581273 GGTCACTACAATCTTGGCCT 60 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 2 2 3 92 4 150520268 150520286 TTTACGTAGGAGCTGTGGT 58 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809 1 2 3 131 17 43665868 43665886 CAAGATGGAGTGGGAAGAG 57 43665981 43666937 AAAGTAGGCACTTGCTGTC 58 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000068410 3 1 2 93 4 22970353 22970372 TAGGAATAATTGCTGGCACC 58 22975179 22982551 CCATTTGACCTCTGTTCTCG 59 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 2 2 2 81 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556153 22557558 CGAAGTCTTCAATATCCTTGGG 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 1 2 2 80 6 36949335 36951673 ATAATGGAAGTGGGAAGAGTG 58 36951713 36951733 ATCCTCTGTTAGTAGCAACTG 57 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 3 2 2 81 11 67107554 67107572 TCTCTTTCTGCTGGTCGTC 60 67107617 67117870 AGTCTTTCTGCTGGGTCTG 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171 2 1 2 80 10 29151026 29151044 AGTACAACGTCACCACCTC 59 29151085 29174570 CTCTGTCCTCAAACTTACTTGC 59 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000085439 3 1 2 80 1 219310115 219310241 ACTATCTCCATATCTGTAAGGAGG 59 219310058 219310079 GAAGAGTTTCAAATGGCTTCAG 58 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 2 1 1 60 X 93065479 93065498 CTAAATTGGCAAGAGTCCCA 58 93065312 93065331 TATCTGACAGTGCCATAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000091545 1 1 3 80 2 113833223 113845508 GAGTGCTTCAGCTCTTGTG 59 113845549 113845570 CACTTACAGGATCCTGAATGTC 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 1 4 4 80 5 116637615 116652349 CTAGTAAGAGTGTCACAAACACC 59 116652383 116652407 GTATGAGGAACTTTCCAAATCAGAG 60 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 3 2 2 80 X 78770641 78770661 GGGATCTGACCTATGGAAGAG 59 78770702 78771473 GAAGGAAACATACGTCTGCC 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 2 1 2 80 4 118230304 118230438 ACTGACAGAACAACTAATGCG 59 118230476 118230498 TACCCTTTATCTGGAAAGACTCG 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 1 2 2 80 1 101625880 101626066 GAAGAGCTGACGGTCTCAG 60 101626110 101626128 CAGAAGCATCGCTTTGGTC 60 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 1 2 3 80 14 22734017 22734039 CTTCAGCATACTGTCAACTACAG 59 22734075 22735542 ATGGCATTCTCCTTATAGGAAGG 60 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438 2 1 2 81 6 36091140 36091475 TCTGAGCACTCAGATGAGG 59 36091518 36091538 TCTACAGAAGTGGTGATACCG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 2 3 3 162 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606139 116606392 GAATGATCCTTCCTGCTGC 59 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000087045 1 1 2 84 7 67341606 67341624 TCCAAAGTTTCCCATGCTG 58 67341538 67341560 AATAAGAAGTCTCTTCGGCTC 58 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 1 1 1 73 20 2541198 2541216 ATACACATGCCATGTGGAG 58 2541021 2541039 GCATACTGGACTGAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 1 2 2 80 1 84367073 84369903 AGTGACTATGGCCACTTCTG 60 84369946 84369964 ACAGCATAATTGACGGCAG 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000079607 1 1 2 80 17 56960377 56961141 CTGAACTGCTTGCTAAGTACTG 59 56960318 56960339 GCTTGTCCTCTACTTCATTCTC 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 2 2 2 80 5 169400329 169406759 TGCCTCCTATTGTGTATTTACG 58 169406800 169406818 CCATGCGTTCTAGCTTCTG 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813 3 1 2 81 14 112719622 112726627 GTGGTACATTCTCTTAAGGTTGTG 60 112719564 112719585 CTGACAGATGTTGCCTAATTCC 60 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685 2 1 4 81 10 67638218 67639569 TTTCTTGACAACAGGCACG 59 67639614 67639632 AGACAGTAGCACCAAAGCT 59 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 2 2 2 80 12 17551288 17551307 GTATCATCAGCAGGTTCCTC 58 17547979 17551246 TCAAGAGCTCAGGATAGACC 58 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000066137 3 1 2 89 10 105752611 105752629 TTTAAGTACAGCCCTGGGC 60 105751466 105752559 CAGCTCAATCCTCTGTTCCT 60 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082 1 1 2 81 4 7112384 7112405 GATGAAGACTTCAAACCTAGGA 58 7111902 7112342 TATACCGAGTCCTGAGCAC 58 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000012655 1 1 2 121 4 84424009 84424819 CGATAAATATCTCTTCACTGGTCC 59 84439754 84439772 GTATTCACACCAGTGTGGG 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076858 3 1 5 81 X 63806025 63806049 AGAGATATCATCCGAGAATACACTG 60 63805593 63805988 ACCAATTTAGCTTCTCCAGGA 59 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 3 2 2 80 15 36940144 36940163 CTGTACTTTGCAAAGCAGTG 58 36940206 36942785 TGCAACTCTTGAAAGGGTC 58 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 1 2 2 80 13 44504938 44504959 AAATGCACCCAGTTAGTAAGAG 59 44507346 44508911 CGTAAGATGCAAACTGTTGG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078463,ENSRNOT00000058735 3 2 11 98 6 99141820 99141838 CCCTCTTGAGTGGGATCAC 60 99141898 99142441 ATTTCTACATCTGACAGTGCG 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025871 2 1 3 80 18 57755779 57819618 CACTCATGTGCTAAGGTATACAG 59 57819657 57819676 TCTGGGTCATTGTGTATGGG 60 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000088570 3 1 2 82 X 84767704 84768420 GACTAGATAACTGGCTGAAACTG 59 84767078 84767099 TTCAAGTATCTGTTCTTGCCAC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 1 4 6 80 15 36972824 36976235 CATGGGAGATGCATTTAGCC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183 1 1 2 80 17 63838774 63860386 GTTACCAGGAGATGAGATTAGCA 60 63838716 63838734 GAGACGATGAACCTCAGGT 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 2 3 3 86 4 125694243 125694261 ACTGCTGACTAATGCGGAG 60 125694034 125694193 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 3 4 5 89 2 30666639 30667390 GATCTAGCTCGGGAAGTCTG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 2 2 2 80 7 139715019 139715446 GGCCAAAGGTCAGATTGAG 59 139715487 139715508 TTAGTACCAAGTTTGGAACCAC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 3 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527374 TCAGAAACATAGATGCCATCCA 60 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 3 1 1 61 1 221538175 221538193 CAACTCTGTGGGAGTGGAG 60 221540474 221540493 AGCTGTTTCTGAGACTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269 1 1 3 82 15 61847334 61852607 ATCACCCTTACAGTCGAGG 59 61852653 61852671 ATATTGAGGAGCGCCTCAG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 1 2 3 81 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931376 46931395 TCAAGGTTCATTTCCTGGGA 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 3 2 3 84 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931378 46931398 GTCTCAAGGTTCATTTCCTGG 59 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000071751 1 1 2 95 15 8746187 8746208 TTGCAAAGGGAAGTGATTGG 59 8746266 8746284 TGGCATGCTCTCAGATGAG 60 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 2 2 2 80 17 54021140 54021160 ACTAGACCTTTCTTCCAACCC 60 54021198 54021654 AGTAGGTGTTCTAATCTTGGGAG 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 3 3 3 110 20 27176418 27216222 GCAACATCGATACATTGAACTC 58 27216291 27216499 CCTCCTTGATTATCCATTCCA 57 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 1 2 3 81 8 107522049 107525333 GGATAAACAGCAGTGTGGG 59 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891 2 1 2 80 3 163969829 163972317 TGGGTGAGATGTTACCTGTG 60 163969768 163969787 ACACCACTGTGTCGTAAGAG 60 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693 2 1 2 80 18 58366968 58368955 TTGTTTCAAGGGTTTCGTCTC 59 58366908 58366928 CAAGGTTGTATCTGTCCACAC 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 1 2 2 80 5 139816389 139816407 CCAGCTGGAGGTAGAAGTG 60 139816450 139816729 TTGATATAGGTGGCTGGGAG 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602 2 2 4 88 6 99192274 99192293 TACCATAGACAAGAACCGGC 60 99184559 99192223 TCCTGGATCCACACTTGAC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602 3 2 4 90 6 99192275 99192295 TGTACCATAGACAAGAACCGG 60 99184559 99192223 TCCTGGATCCACACTTGAC 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000051009 1 1 2 80 2 233616179 233616197 GACGCCTCCAAACATAGAC 58 233616240 233617126 CTGGCCCTTATCTTTCTCTG 58 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 3 2 2 80 18 58333471 58333489 AAAGCCAGCATGATGTACC 58 58333532 58333674 TTCTATGAGCTTTCCTGCTC 57 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910 1 1 3 186 10 75089421 75094177 GCCTTTCAATGTCACAGGG 59 75094326 75095249 TGTGATGATCTGGACCATGG 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000084855 3 1 4 80 4 85601302 85601451 ATCGAGAGTGAAGGTCCCT 60 85601489 85601513 TAGATAGGAAGAAAGAACAGATGGG 60 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581 1 1 2 114 3 177043142 177043592 GATGAGAGGGAGGCTACAG 59 177043670 177043688 TTTAGTTGAACCCGTCGGT 59 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000068748 1 1 2 80 7 143108237 143108259 GTGGCCGTAAATGTAAACTG 58 143108176 143108194 AATATTGGTCAGCCAGGGA 58 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000068748 3 1 2 80 7 143108234 143108256 GCCGTAAATGTAAACTGCCT 59 143108173 143108191 CCCAATATTGGTCAGCCAG 58 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 3 2 2 83 6 107621813 107621831 AGAAGCATTCTGCTGAGGG 60 107621877 107622953 TTACTGGAGTACCATCCAGC 59 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000060924 1 1 2 152 12 11223753 11226421 GAAGTCTTCAAGGTGTGGC 59 11226537 11226555 GATGGTCTCTTCCTGGGAC 59 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 2 2 2 140 4 85560618 85560636 TGAGATCATTGGCACCCTG 60 85560740 85561014 CCAGTGTAGTCAATGGCCA 60 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 3 2 2 80 18 4077879 4077900 CAGAATAACTCATACGTCCAGC 59 4077940 4078977 TCTTGCTACAGTCTCTGCTC 59 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 2 2 2 80 7 24660069 24668118 CGGTGATCATGAATCAGGC 59 24653190 24660026 CTTTCATTGACCCTTCTGGG 59 NA InUTR Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000083561 3 1 2 80 13 91736598 91737012 GCTCATATCTCTGGGTGGT 59 91735312 91735332 AGTATTCTAATCCACGGTGGG 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334 2 1 2 80 1 75617133 75617155 TGAGGGTATCTAAGGAGAATGTG 59 75617195 75617868 TCCCATGTTTCCCAGTGAC 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 2 2 6 80 5 47907011 47907031 GCACAAGTTATCCTTCCTCAG 59 47907071 47907162 TGAGCCTCTTCTAACAACCTC 60 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866 2 1 2 81 12 16107018 16107037 ATGCCAATTTCCAGAATCCC 59 16107081 16109722 ATGCTGGAGGTGTATGAGG 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496 2 1 2 80 5 142894420 142896726 TACTACGAGAAGGGTCAGAG 58 142896769 142896787 CTTCAGGTTGGTGACAGTG 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041 3 1 2 81 1 265918032 265923320 GACCACATTCTTCTATGATGAAGAG 60 265923358 265923377 TGTCCCACTGTTTAAGACCT 59 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 2 2 2 80 5 139711371 139711391 TTCCGAGTACAAGAACTACCA 59 139708846 139711331 TTCTGCACTGATCATCTTCAC 59 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 2 2 2 80 6 107642172 107642835 ACCTATCACTACACAGGCTC 59 107642111 107642132 TTTCTTATAGATGGCAATGCCC 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278 3 1 4 93 1 262911974 262911992 GTTAAGGCCTCAACTCCGA 59 262912725 262913323 CATCCTCTACGCTGTCTGG 60 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000083956 1 1 3 80 7 143451765 143451783 AAGAACGACCAATCACGGA 59 143323596 143451721 ATCCTCGTACTTGGTCCTG 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000059162 2 1 3 80 18 60001430 60002478 GACATGGTTCTAGCAGAGC 58 60001368 60001388 AAATGGTTTCTCCTTGGTTCC 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 2 3 3 80 18 59994486 59995704 CTTGTCAGATGACTTGTGTCAG 59 59994427 59994445 TTCAGTGTCCCGTATACCG 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 3 2 5 80 13 78784577 78784595 CAGCTAAGCTTGGAACTGC 59 78784636 78785252 AGAACACTGGTTCTCCATACTC 60 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000003689 3 1 5 86 13 78775306 78775324 GATACCAACAGGTGGAGGG 60 78775372 78776014 GACTATAAGGAGGATCCCTGG 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000002030 1 1 3 84 12 25511226 25513252 ACTTGAACTCAGTAATGTGGG 58 25511162 25511180 GAAGAAATACGCTCGCTCC 59 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 1 2 3 80 13 77639573 77639594 TATAGTGAATCTCGTAGCTGTC 57 77639633 77640776 GGAGGATCAATTCCTGTAGTG 58 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000066549 3 1 2 93 5 151114889 151116530 CGGACACTTGGTTGTTAAGTG 60 151113337 151113356 ATTCTGAGCACACTTCTTGC 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 3 2 3 80 X 65092893 65093233 CAAGACTGGACGAAATGCTC 59 65092832 65092851 GAAGAGCAATTGAACAGCCT 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 3 2 3 80 7 143493425 143493809 TGAAGAAGGATGTGGATGGA 59 143493364 143493384 AGTTGATTTCATCAGTCAGGC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000031331,ENSRNOT00000077458 1 2 3 80 6 108511886 108511904 GCTCCTTCAACTGTCTGTG 59 108506898 108511845 TTGCACATTCATCTATGTCCAC 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 2 2 2 80 13 75187898 75192649 TACTATGGAAGGAAGAAGGAGG 59 75192689 75192708 CTTACTGGCTAGGAACAAGG 58 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000085650 1 2 3 80 7 104734585 104741516 GCTTGATCCGAAAGAAGACTC 59 104734525 104734543 CTGCCATACTCCTTGTTGC 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000085650 2 2 3 100 7 104734578 104741508 CGAAAGAAGACTCTCAGAGC 58 104734497 104734515 CTTCTTCAGCAGAAAGCCC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000082161 3 1 4 89 4 15741019 15742420 TCAGGCCAGATCAGAACAG 59 15740434 15740453 GGTGCTATGAAAGTGTAGCC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240 1 2 4 82 4 15742475 15748960 GATTACAGTTTGGCCTTGGT 59 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 3 2 3 80 15 60750288 60750306 GAGCTGTGCAGTGTATCAG 58 60748352 60750246 AAAGCCCAGAAATGTGATCTC 59 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492 1 1 2 80 1 193131915 193132415 TCCTTACTTTGATAAGGATGGC 58 193132456 193132474 GGAAGCTTCATGCTTTGAC 57 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076709 1 1 5 80 X 71311566 71311584 TACAGAAGAGAAGCGAGCG 60 71310534 71311523 CAGATCTCCTGCTCTCAGTG 60 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 2 2 2 80 6 18900542 18900561 ATTCCTGCCCATATTGACTC 58 18900603 18912487 ATCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 2 2 2 80 7 70958859 70959142 CTTCTCTGAGATGGACCGA 58 70959184 70959204 TTGAGGTTCAGAGTTTCACAC 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 2 2 2 80 3 2937959 2938578 TTGTACCTGAACAGGTGAC 57 2937897 2937915 CATCTCCTTCCTCAACGAC 58 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 1 2 2 80 12 13718208 13718317 CTTCCTGGGTATGGAATCCT 59 13718359 13718378 TCTTTACGGATGTCAACGTC 58 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000090096 2 1 2 80 8 71663005 71670026 GAAATCAGACCACATCTTCAGAG 59 71670064 71670084 ACGTCAGGTATGAGGTATTGG 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000083682 3 1 3 80 2 243559815 243559833 AAAGCCTCTCCGTTAACCC 60 243559876 243560775 CTTTACTCTTAAACCCGCCG 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 1 2 2 80 7 97900291 97900312 GCAACGATATTGAAGTTCTCAC 58 97899431 97900251 GCAGAGCTTTCTCGTATTCC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 8 9 81 4 14159677 14159697 GAGGAAGTGGCAAAGAATAGC 59 14159736 14167454 CCTTGGCTAAATAACGAACTCTG 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000077505 3 1 9 98 4 14071767 14071786 CATTATTGGTGCTGTCCTGG 59 14071846 14076151 TCTTCAAGGACAACTTCCCT 59 NA Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 2 2 2 84 X 68777364 68777382 ACCTAACGCATCAGTACCC 59 68777430 68778032 GTGCCAACGAAGTTTCCTG 60 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423 1 1 2 80 2 173463296 173463316 CAACACTGTTGATCAACAAGC 59 173455793 173463255 TCTTCTGAAGGATCTGCAGG 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000082058 1 1 2 80 7 116960398 116961963 GATTTCTGGATCCACAACGG 59 116960337 116960356 GTTCTGCACGTCAATCATCC 60 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000074230,ENSRNOT00000071067 2 2 3 81 12 24595376 24599715 AATACACGTCTCCAGGCTC 59 24595313 24595333 CAGGAAGAAGGAATTCAGAGC 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000071067 2 1 3 80 12 24606685 24606707 GTGGAGAATCTACTACAAGAAGC 59 24605886 24606268 CAACCATATACCTGCTTGGG 58 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000047118 2 1 3 106 16 3674812 3674833 AGAGGGACTCGAAACTAAAGTC 60 3674898 3674921 CGTTTCTTCGACTTCACTCAC 60 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 3 2 2 149 5 160571604 160575267 GAAGACAGCCAGGAAGAGG 60 160571473 160571493 AGTTAGCGATTCATAGGAGGG 59 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 2 2 2 81 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066375 117066586 CCACATGAAGCTATAACTACCG 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000002834 3 1 2 119 14 14953688 14953706 TAAATGAGGTCTGCAGGCA 59 14951619 14951639 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 3 3 3 81 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900107 TTCTACTGATCATCTGGTCAGC 60 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 1 2 3 80 3 113420082 113420206 CCCAGAGACAATAATCTTTCAAGG 60 113420025 113420043 TCCGGTATTTGTGGTTCCA 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982 3 1 3 88 3 113420555 113420575 AATGTTACTCAGTCTGCACCT 60 113419558 113420505 TAGGAAGCCTCGTTGTGAG 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 2 3 3 80 3 2514181 2514274 GTCAAGAAGGAGATTCCCAG 58 2514120 2514138 CAGTCCTACTAGCAACCAC 57 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627 3 1 2 82 19 26195317 26195337 GTCTACTGCTCCTTTATCAGC 58 26195379 26195471 ATTGAGAGCATGAAGCTACTC 58 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 3 1 1 63 7 34121489 34121510 GGGCTCTGAGATACTATTACGA 59 34103037 34103055 TACACAAACTTCTGCCCGA 59 NA DesignNoJunction Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423 1 1 2 109 4 31534282 31537249 GCAACATGCCAATCTTTCCT 60 31539048 31539066 TCAACACCATCTCTGCCTC 59 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000089292 3 1 2 93 4 31536677 31537269 TACAAATGGGATCTGTACGGA 59 31539048 31539066 TCAACACCATCTCTGCCTC 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 1 2 2 80 2 232155839 232155861 GAGGCATTATGACTCTATTGCTG 60 232154421 232155803 TTCTCCTCTTGTAAGGCTAACTC 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076272 2 1 4 143 13 78431958 78443054 GAAGCAGAAGAGGAACCTG 58 78431833 78431851 CACAGTCCAGCATGTTCAG 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799 2 1 2 130 1 267092771 267122326 CAAGAGGAAATCAGGTGCC 59 267092659 267092679 CGATGACATCTACTACCTCCC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 3 2 3 80 4 33640509 33640527 GGATTAATGGGCAAACGGG 59 33641008 33641503 CTGACCATGCCCATAAAGAG 59 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 2 2 2 85 19 52533160 52533178 AATGGAGCCCTGTCTTCTG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 3 1 1 115 X 106792006 106792024 AGAGATCGACCAGATCCGT 60 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971 2 1 2 108 19 37668249 37669152 TGGGAGCGATCTAGTTTGAC 60 37669223 37669241 GGGATCTGGTGTACCACAC 60 NA InUTR Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000082741 1 1 3 80 7 82058595 82058613 TATGGATTACAGCCAGTGC 57 81992028 82058551 ACATAACTAGCTTCAGGCG 57 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 3 2 2 80 12 16918362 16918486 AGGCAAACCTATCAGGTCC 59 16918528 16918548 AAGCGTAAGAAAGTGATGGAG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 3 2 2 81 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632 3 1 2 80 7 117505359 117508434 CTTTGACAGTCACACCTGC 59 117508478 117508496 AGGAGCAGCTCTAAGACCT 60 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174 3 1 2 80 3 60748463 60748482 TCAACAAGCAGTACCTTCAC 58 60747733 60748420 GGTACAGGAACAATTGGCC 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 2 4 6 115 19 33932967 33965639 ATGTGTTTAAGCTGTTGGCG 60 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 2 2 2 80 10 13865061 13865080 CGGGCTACAAAGGATTACTG 59 13865120 13865298 TTCAAGTACCGTGATAATGTCC 58 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000000474 3 1 2 81 1 167076997 167077015 GAGAGGCAGAAACTCACTG 58 167077682 167083464 TATTCAGTTCTTCCACCTGC 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 1 3 4 80 8 70175533 70175971 TGAACGTGTTAGACTCCCA 58 70176009 70176033 GTCTAAGTTCAATGTAGAAGTCCTC 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 2 3 4 81 18 6777413 6777431 CTGATGTTACTGGTTCCGT 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 1 3 3 80 20 3149123 3149142 CTCTGCAATTGTCCTCTGTG 59 3149185 3149692 TGCCTTCCTCTTTCACCTG 60 NA Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 2 2 2 80 12 19630138 19630159 TACTTCATAGCCCTTCTTCTCC 59 19630197 19630431 ATCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256 2 1 2 86 9 82724732 82724933 AGGATCTTCAGCAGACTTCAG 60 82724981 82724999 AGGTTTCAGTGGTACTCCC 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 1 2 2 80 7 25972147 25980642 CTCAAAGATCAGGTGTTACCAC 59 25980682 25980701 CACCAGCTTATTTCTCACGG 59 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572 2 1 3 80 10 5240095 5260251 CCATGGAGGCCATACTCTG 60 5240033 5240052 GCATCACTGTTAAGGAGCTC 59 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000060311 3 1 2 84 3 94636353 94636377 CTTCGCTATCAGCATGTAGG 58 94636288 94636306 TGCTTCTCCAACACTTCCT 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311 1 1 2 98 1 104149447 104149465 ATAAGACCTGCTTTCGCTG 58 104147494 104149385 TGGCATAGCAAACTTTGCA 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025731 2 1 4 106 17 70703392 70703410 CACAGTCCTGAAACTGACG 59 70703584 70705170 TCTTTGCATCCTCTGACCT 58 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725 1 1 3 80 7 27248816 27248834 CAGAGACCTGGACGAACTG 60 27250457 27250483 TCCATGATCATTGGATACAGCT 60 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000031946 1 1 3 80 7 27288924 27289010 CCTAGGTAATCGCCAATTATCTG 59 27289111 27289130 AGCATCTCTGTCATGGATGG 60 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 2 2 2 78 4 82159735 82159755 GATGAAGAAGATCCACGTGAG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 2 2 2 82 8 116314190 116314212 TTCATGGTAGTAGATGATCCTCG 59 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 3 3 3 71 4 82176911 82176930 GTACACAAGCCCTGTTTACC 59 82175281 82175299 CCGTGACTCCCATACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000091318 3 1 4 80 15 1006250 1011434 ATAACGGAGTTGGTGAACGA 60 1011476 1011495 GAGGTACAGCTCTGTGTCAG 60 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 1 2 2 138 12 11779885 11779903 GCCAGTAGAAGTCAAGCCT 59 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA InUTR Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 2 2 2 92 15 20777230 20778252 CATCACGAAGAACATCTGGA 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000064951 2 1 4 81 12 786067 786746 GCATTGTATCAATCTGAGTTGG 58 786784 786806 CCATACCTAATTTCTCTTCTGGG 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 1 1 2 80 10 10841873 10844847 CCACGATGAACACTCTAATTCTG 60 10841815 10841833 CGTAGTCCATTGAGTGCCT 60 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000051342 3 1 2 82 17 69391736 69395070 AAAGAGAACATGAAGCTGAGTC 59 69391675 69391694 ATTCCACCAGCTATGTACCG 60 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000084628 2 1 2 80 1 53186152 53186170 ATGCCCTCAATTCCGAGAG 60 53186213 53186398 CTTGGGTAAAGCTGTTGAGG 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893 2 1 2 82 1 5248348 5250567 TCCTGCTGATAACTCCCTG 59 5250609 5250631 CTGTGTACGGATTATAGTAGAGG 58 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026394 1 1 2 80 18 55810078 55810096 GATCGCAAGAAACTGGCAC 60 55811281 55811801 GTACTTGTCCACTACATGAATAGTG 59 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 2 2 2 120 3 164275572 164275590 TCTGAAGATGCACATCCGA 59 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 2 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930859 50930878 TTTCAGAAGCTTCTCTGTGG 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 3 2 2 80 4 99528185 99528203 CCAAGACAGCAGAACACTC 59 99526341 99528142 CTGCTTGTGACATCCTTGAG 59 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 3 2 2 93 1 204761788 204761806 AGAAGATCGGTGTGAAACG 58 204718390 204761731 AAGGTCTGACAGTTCTGTG 57 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000046798 2 2 5 80 20 3415244 3415890 GTTCCAGAAAGTGATGAAGAGG 59 3415185 3415204 GTCACTTCCCAAACCAAAGG 59 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 2 2 2 80 12 25500930 25500948 CTGCATCCTATTTGGAGCC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000089524 3 1 2 92 3 97389367 97390785 CAAAGAAACACAGCCATTTCTC 59 97390833 97390856 CGAGACTAATGATTTGACCATCTC 60 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 3 2 3 83 X 120959395 120960415 AGCAAGTTTCAGCCATGAC 59 120960460 120960480 AGGTCATGGTAAGTACTCCAG 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 1 1 1 78 9 85542900 85542918 CTTCCAGAAGGAGCTGGAG 60 85544451 85544469 CCAGTTTGGCTTCTCTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734 3 1 2 80 20 29322182 29322202 ATAACACCCAATGAGAAGCAG 58 29330323 29336581 CCAGAATTCCTTTCCATCGA 58 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000081245 3 1 2 80 14 106233393 106234245 GAGAGTAGTTCAGGATCTTAGCA 59 106233335 106233357 TCTAGTTCTTGGAGAATGACCTC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 3 2 2 80 6 111381614 111381632 CATCTGTAGTGTGCCTGGA 59 111379848 111381572 CCTGTGTACTTGAATGACCAG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000064613 1 3 5 80 8 73189664 73189683 AAGACAGGACGTTGTTACGA 59 73185869 73189623 GCCAATTTAGGTCATCATCCG 60 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431 2 1 2 108 12 2213722 2213740 CAACCCAGAAGAATGCAGG 59 2213899 2214012 GATTGTGAGCACCTCTGGA 59 NA Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 3 1 1 110 7 123579013 123579031 AGGTCAGTCATCGTCACTC 59 123580742 123580761 TGTCCCAACATAGAGAAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000077117 2 1 2 93 16 2724789 2725895 GCAACAAGATGAAGAAAGCC 58 2725950 2725969 ATAGCAGAGGAAGACCTTGG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 3 1 2 81 2 248722155 248723258 GGTAATAGGTGTGGTAACTGTG 59 248723298 248723318 TGCTGAAAGTTCTCCATTCAG 59 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 1 2 2 80 7 142109764 142109784 AAGTGTCTCTTCATAGGCCTC 59 142109823 142111978 CCTAGGAAACAGGTACATTAGC 58 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873 3 1 2 87 1 143661626 143679881 ACCGATCAAATTCCTGGAC 58 143679932 143679950 TTTCTTCTGACAAGGACCC 57 NA Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 3 2 2 80 2 197740083 197740102 ACGCTCAAACACATTAAAGC 58 197740145 197747749 GTTCCATGTCTCACCAGTG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 1 2 2 97 3 79258840 79258967 AATCCAAGTTAATCCGAGTGG 58 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 3 1 1 64 17 66240105 66240126 GAAAGTGAAATCACTGATGAGG 58 66240323 66240341 TCTGCAGTCTTCTTTGCAC 58 NA DesignNoJunction Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543 2 1 2 80 4 78768906 78768927 CTCATTGGTAAAGAAGGAAGGA 58 78767091 78768866 TTCCTGCAATGGAGATATCG 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 3 1 2 81 15 28023026 28023044 CTAGACTGGTCCCAGTCAG 59 28034122 28034141 ATTGGGTCCTCTGTATGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000013546 1 1 3 80 3 11234894 11234912 GAAGTCCTGACCAAGAAGC 58 11234956 11235409 TTTGACAGGTACCTGAGCA 59 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 1 2 2 177 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885047 171885065 CTGAAATGCCGAGTGAGGA 60 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 1 2 2 80 15 28708272 28708292 CCTGTTATCAGTAAGGACTGG 58 28708334 28708885 GGCCAAGAATACATCCCTG 58 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000075382 1 1 3 138 5 159072076 159074518 CATCAACTTCAAGGGCCAG 59 159071956 159071974 ATTGTCCTTGTCGTAGGCA 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 3 2 2 88 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976085 56982455 CTCTTAAGATCTGTGCATATGACTC 59 NA Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 3 2 2 113 1 90952694 90953342 AGCCTCAGGACAAGAAGAG 59 90952507 90952525 GGAGAAGGAGGAAGGTCAG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 1 5 6 80 20 3305442 3306023 CGATGATGGAAGACAAATCTGAC 60 3306059 3306081 CACAATGGTCTTCATATCGACAG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 2 2 6 119 20 3300785 3301071 AACAGTTAAGGACCACCCAG 60 3305191 3305209 TGGTGGAATCATTGGTCCC 60 NA InUTR Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 1 2 2 80 12 8116099 8116118 AAAGATCCAGGTACTCCAGC 59 8114418 8116058 GACAGTTGTCTGGTAACAACC 59 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869 2 1 2 85 12 8197820 8197838 AGAAGCTAAGAAGCCTGCC 60 8190004 8197771 TCTGCTTTGGGTAACCTGG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 3 1 2 124 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931497 220931515 ATAGCTGGAGTCTCGAAGG 58 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 2 2 2 80 1 69817726 69817746 TGTCTAGCATCACCTTTCCAG 60 69817788 69818577 TTCCCTGAACAACACCCTG 60 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000014470 1 1 4 115 2 149313114 149314182 AATGAAGATGGAGGAGCAC 57 149314259 149314279 GAAACTCAGAACCAAAGTCAC 58 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 1 2 3 146 9 12477292 12587077 ACAGTTCCTACCGCATCAG 60 12587187 12587205 AGAACCTCTTTGCCTCCAC 60 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 2 3 3 86 9 12476113 12476132 AAGTGTCAATTCGAGAGGGA 59 12476181 12586287 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 3 3 3 87 9 12476112 12476131 GAAGTGTCAATTCGAGAGGG 58 12476181 12586287 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607 2 1 2 80 1 13212492 13262078 TGGTTCTCCAGATCATGGAG 59 13262118 13262139 GCTTCAAAGCAATGTAGAACTG 59 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 1 1 2 80 7 49063874 49074132 GGAAATATCGTGGTAAAGTTGC 58 49063815 49063834 TAAATGCTTGAACGCTTCCT 58 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000025070 2 1 2 106 4 118871038 118874567 CTGTACAGAACAGGCAAAGAC 59 118874633 118874653 GCAAAGTAATATTCAACCGCC 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 3 3 4 82 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230012 124230031 TGTTAGGGTGACACCATCAG 60 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000077163 1 1 2 80 8 71019322 71019340 TCACCTTAAGACAGGAGGC 59 71019383 71021697 TGCAGCAAATGTATCTGCAC 60 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 1 1 1 96 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11479523 11479541 GTGGTAGGTGGTCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000080666 2 1 3 108 10 46118789 46118807 CAAATGGGTGTCATGCGAG 60 46118879 46121875 CACATGTAGCCTTGAGGCT 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 1 2 3 80 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 1 2 8 80 6 64838566 64838586 TCTATGCACAAACATCAGTGG 59 64838627 64839960 GAAGAATACCAGCTTCGTCC 59 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 1 2 2 95 18 35781590 35781608 TATGAGGAGCGCATCACAG 60 35762729 35781532 CTCATCTTCCTCCCTGATGG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000020608 1 2 3 83 14 21127747 21127765 TGGATGGAGAATGGCTCTG 59 21114321 21127700 CCCAAGAGTCTTCATGGGT 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 1 2 2 84 19 563182 563300 ATTTGGGAACAGGATGGAG 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858 3 1 2 155 15 4392275 4395189 GGAACTTGACCAGAATGCC 59 4390232 4392157 CTACCCAGAATCCTGAGGTG 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000079812 3 1 2 83 15 4392282 4395195 GGATATGGTGAACTTGACCA 57 4392218 4392237 CTTCTGTTCATACAGGAGCT 57 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000016340 3 1 2 106 11 69837668 69837686 GGGTAGAGGATGGTGACAG 59 69837756 69856144 GTTGCCATCCTTGTCACTC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000067070 2 1 2 86 1 15475039 15488396 TTCAGTCCCTGAAGGTGTG 59 15488446 15488464 TGCTGTCACAGCAGTAGAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 3 2 4 123 7 123637579 123637598 GATCAATGGACTGAAGGCAG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 2 2 2 80 1 142963145 142965386 CAGATCCAGGTCTTCCTGAG 59 142965429 142965447 GGCAAAGACATCCTTCACC 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 1 2 4 107 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779540 226779558 AGCCACTTAGCATCACCTG 60 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711 2 1 2 80 12 22102815 22102834 CTATTCGGACACTTCTGGGA 59 22102877 22103550 GAGACTGGCTGACAGACTG 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000081282 2 1 2 83 1 91029646 91030652 CTAAGTGAGTCAGGGAGCC 59 91030699 91030717 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 3 3 4 83 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470323 28485474 AGTGTACTTCCTTTCCTTCTCC 60 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 3 3 3 82 12 39693750 39693772 GAGCTATGACTATCTCAAGACTC 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000071818 1 1 2 80 7 115036738 115037052 CTTTCCCTGAAGGTCTGCT 59 115036676 115036695 AATTCTGCCATTTGCCAGAC 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 2 2 7 80 2 186117956 186122500 CCGTTATCATGAACACGGC 59 186117894 186117912 TGGATGATTTGCTGCTGTC 59 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 3 2 2 81 7 11279523 11280525 TCCGGACGATTACTTGTACTC 59 11279462 11279480 GTAGAAGACGGAGCCACTG 60 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000057266 1 1 2 80 12 41282914 41282932 AGGTGGAGTTTGATGTGCA 60 41284774 41284857 CATAGATTTCCGTGTTTGGGT 59 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 3 2 2 88 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078153 84078171 AGGAGAATGCCTTGTCCAG 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000091461 1 1 3 90 20 3346604 3346625 CAAGTTGCATGTTGACTTTAGG 59 3349786 3350387 ACGTAGTAACATACTCCCTGG 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000008160 1 1 2 82 7 142645202 142650185 CAAACACGCTAGTGCAGAG 59 142650230 142650249 AGATGAGGAAAGTGTTGGCA 60 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923 3 1 2 80 7 142645203 142650186 AAACACGCTAGTGAAGAGC 58 142650230 142650248 GATGAGGAAAGTGTTGGCA 58 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790 2 1 2 82 1 57370768 57370787 CAAGAGAAGAGCTGCAATCC 59 57370830 57382149 GTAATCCAGCTGGACAAACAG 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 2 2 2 83 17 87933920 87950482 CTGGCTGGAAAGAATGTTCTC 59 87932530 87932548 TTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 2 2 2 80 10 27142651 27145087 TCTCCAGTTATGGTTATCCTCG 59 27142592 27142610 ATGACCTTGTGTCTCCCAC 59 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109 2 1 2 82 10 47529372 47529390 GTTCAACAAAGGAAGGCTG 57 47526897 47529326 ATCACAGCTGATCCTTGAC 57 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000079515 1 1 3 80 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935193 154936960 TCTGTAGAGCCATAATCCCTC 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000020556 1 1 3 80 3 154905298 154905319 TTCAGTGGCTGTAAGTGAGAG 60 154910628 154910651 GTCAGTCCATAGCAAATTACTTCC 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 3 3 6 98 20 3430210 3430228 GAGCAAATGGCCAAGAAGG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000080844 2 1 3 148 18 65388686 65388762 ATCAGAGTCTCCTCGGAGG 60 65388873 65389351 TTTCTTTGTCTGCACCTCCA 60 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 3 2 2 80 4 100299540 100299559 CAACAGTCACCAGATATCGC 59 100299404 100299498 CATCAAACCCTGATCTCCTG 58 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 3 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152496 104154706 GTTCTTCTGATCATAAGCCGAG 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 2 1 2 99 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755998 78756343 CCAAAGGAACCTTCATGAGG 59 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 1 2 2 146 10 34945761 34945871 AATCTGGATGGCCAGAAGG 60 34945981 34947859 GAAGGCTGCAATCTTCCTG 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 3 1 2 92 20 46236767 46236786 CATCATACCAATGGTTCGCA 59 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 1 2 3 80 X 77154658 77157302 GATGGCTCATAAGGTAAAGGT 58 77157342 77157362 TTTACTTGGTTCACTACTGGG 58 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110 1 1 2 80 1 171921021 171921039 TCAAGCTGGTTGGTATGGA 59 171921080 171929060 TGATCACATTCAGAACTGACTC 58 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000067650 2 1 3 86 14 33117630 33117652 CCGTTCATATTTCTTCCTTGGAC 60 33117698 33123803 GTTACTGCAACCCAACCAG 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 1 2 2 80 2 243841237 243842501 CCCTCTACAGAACAGGTGG 59 243842544 243842563 GAGATCAACCGAAGGTTTGC 60 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859 3 1 2 81 15 106272827 106274616 TATCGCACAGACCATTCCT 59 106274661 106274679 TAGCTCATCAGCATTTGCC 58 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090 3 1 2 164 7 40223520 40223703 AAGAATGAACAGCTTCGTCAG 59 40223826 40224583 TGTTAAGGTCTGTATTTCGTCC 58 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000073268 1 1 2 81 4 123489644 123494342 GAACACTGTCCAACACTGG 59 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 3 1 2 81 10 104732211 104732992 GAGATGGGTCATGGAACTC 57 104732148 104732168 TGTTGAGAATGAACTCTTGGG 58 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098 3 1 2 83 10 85964774 85964793 TGACAACTCCAGTTCCAGTC 60 85963475 85964728 TTCTGCTTCTGTTTGGCAC 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000002793 2 1 3 81 14 25796228 25796247 GAGTTTCCGACTTGAGTCCA 60 25796291 25859223 GTGACTGGAGAAGGAGCTG 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000044591 3 1 3 82 11 80933952 80934583 CTGGGCAAGTTAGTCACCA 60 80933888 80933909 GATGGGTCCCATACAATTAGGA 60 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 3 2 2 80 1 56289285 56299799 GAACTGCAAAGATGTGTCCAG 60 56299841 56299859 AACACTTGCTGGAACTCCT 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 2 3 3 80 4 147361934 147372231 GTCTCACAATGCCATCAGG 59 147372273 147372293 TCGATATCACTGGAGATCTCC 58 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828 1 1 3 80 10 32902 32922 CTTTGGAAATTCTCTGGTTGC 58 32962 34050 GTTCTCCATGTACTCTTTCGT 58 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 1 2 3 80 X 72513543 72514993 TCCTGTGCCATCAGAATCC 60 72513481 72513500 ACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 3 2 2 108 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362990 81363009 ATTGAGTGAGACACAGAGGC 60 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000009114 1 1 3 85 10 86383080 86383098 CACTGTACCTTGGGACCAG 60 86383146 86383642 AGACCTGCAAATCCTCTTCC 60 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 2 3 3 80 2 208420948 208423573 GCTTCTGATTCAGGTGCTG 59 208423615 208423635 CTCATACTTGCAGAACTTGCT 59 NA Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 1 2 2 80 1 90512427 90517106 TGACTCCAGAATAAGCCGT 58 90512365 90512385 CGGTCGATGAAATAATGTTGC 58 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844 1 1 2 80 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838632 43839359 CCAACAATGACTCTTCCTGG 59 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 2 2 2 80 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044949 78044968 CTCGATGAAGAAGTTGTCCT 57 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000001044 2 1 2 81 20 28057757 28057777 CTAGTCCGAAATGAAGCAAGC 60 28057820 28057925 AATCCCACTGTCCTTCAGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000077517 3 1 8 88 6 128050254 128050272 CCTTCATTGCAGCTTTGGG 60 128050322 128075369 ATGGAATAGAGTGTCCCTTCC 59 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 3 2 2 80 1 191627933 191627956 GACTACATCTATGACCTGTATGCT 60 191622355 191627899 GTTCTTACAGTATGCTGTGTAGTG 60 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 1 2 2 81 5 133763559 133763577 AACAAGACCATGGATGGGA 59 133762288 133763517 GACATCGGTCAATACAGATCTC 59 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000085403 1 1 2 83 8 79685398 79685418 GAAGATGAGCTGAACAGTGTG 59 79685459 79687520 TGACTGGGTCTTGAAATCTAGAG 60 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 1 2 2 80 1 197259444 197259462 CTACTACATTGGCCTCACG 58 197259506 197261529 GCAGCAATATTGTTCTGGG 57 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576 1 1 2 80 11 87058898 87063141 CACCATGAGCAGTTGTTCC 59 87063181 87063203 GTAGAAGGTCATCTTCATCAGTC 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473 3 1 2 80 4 152302703 152302723 AGCTAAGTTCCAAAGATGCTC 58 152298101 152302661 GTTTCACCTGGCCAATCTC 59 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922 3 1 2 82 5 124442465 124475898 CCACAATGGAAGAGGAAGG 58 124475944 124475962 TCCTGAAAGAGGTACAGCA 58 NA Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000079633 2 1 2 80 1 101512950 101512969 AGTACCCAGCATTGTCTACC 59 101512888 101512908 AATAGAAGGCCACTGGAAGG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 3 2 2 81 7 66863070 66881567 CTTCAGCTCCAGAGGTCAG 60 66863007 66863026 CCATCAGTAGCCAGGATCAG 60 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125 2 1 2 83 13 49880250 49880268 ACTCCTGAGATCACGAGTG 59 49880314 49882762 TTCTACCACCTTCTTCTGGA 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 2 2 3 80 5 159956691 159957083 CTTCAACAGTGAACAGGAGAC 59 159956631 159956651 ATCTCTGGTAAGTCAAAGGGT 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550 3 1 3 91 5 159960634 159960652 GTACTTCCTGGTGGCTCTC 60 159960132 159960579 GCCACTTATGTGCTCTGAC 59 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 2 2 2 80 1 89315333 89316139 CAGAAGCGGAATATGGGTG 58 89315271 89315290 AACCAGCTCTGAGTAATGGA 59 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986 3 1 2 80 15 108316051 108317748 AAGAACGACTTCCAGATTTGG 59 108317789 108317808 AAGACCACTACAGAAAGCGT 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 80 11 73699419 73699439 ATATTGACTCCCTTTGAACGG 58 73699478 73711557 CTGGACCACAATATCACTTCTC 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 1 2 2 162 4 56406869 56411704 GTGTAGAGTGATGCGAGAC 58 56406436 56406744 CACTATTGGTCTCTTCTGGG 57 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 3 2 4 81 1 63846178 63846196 GCTATGGTTCTCCCGACTC 60 63846237 63846488 TCGATGGATTCTGAGACTATGAG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 2 2 2 80 5 124143376 124143395 TTGGGATCGATGAAGTGTCC 60 124143438 124148662 CAGCAACAACACCCTTGAG 59 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 2 2 2 80 9 81831247 81831266 CAACTCCTCTCACAACACCT 60 81831308 81832514 TTCAAGGCCCGTATGTATCC 60 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000067536 1 1 2 82 15 34456421 34456439 AGTATTACTGTCGCCTGGA 58 34456333 34456379 GAGTACATTCTCCATTGTCTCAG 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000007602 2 1 3 80 6 131913100 131913665 ACTCAGGTAGAAGAATCAGAGG 59 131913041 131913060 AGGCTCTTCTATCTCCAGAC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000081649 1 1 2 80 10 72416981 72416999 ATTACATGAGCCAGCACTG 58 72397050 72416938 AACAGTAAATCACCTCAGCA 57 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 2 1 1 182 10 109786350 109786368 TTTCCACAGGTTCCCATCC 60 109786588 109786607 TTACACTGGAAAGTCCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198 1 1 2 80 5 149047761 149060395 CCATCTACCATATAGTCATGAGC 58 149060435 149060453 ACCTGCAGGAGACTTTACC 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 3 2 3 80 4 161731674 161731694 CCACTAATCTTCTGAAGCTGC 59 161731540 161731632 GATCCTCAGGATCCACACC 59 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 2 2 2 80 1 142162683 142162701 TACCTAATGCTGGACCGAG 59 142161672 142162640 CACAGAAATTTGGCTCCTGG 60 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 2 2 2 80 6 132943697 132943717 CTATCTGGAGATTGAGCTGAG 58 132942511 132943655 TAGTTGCTCTGAATCCTGC 57 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 2 2 3 89 X 70565953 70566269 TTCAATGAATTCCTGTTCCGC 60 70566319 70566338 TGCATATGTGACCAGGAGAG 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211 2 1 2 80 3 63416324 63421104 CTACAACAGTTCCTTTCAGCG 60 63421145 63421164 ACTCAATGTCTGCACAAAGG 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230,ENSRNOT00000059814 1 2 3 80 14 34145121 34145139 CAGCCTCTTTCCTAAGCAC 58 34144975 34145080 GTTCACAGCTAATGCATTTGTC 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 1 3 3 80 3 21850537 21850560 GTCTCAAGTATGAACTCATCTCAG 59 21844841 21850501 TCTGTCCATCTACTTCTACCTC 58 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000019245 1 1 2 80 1 114453822 114474840 AACAGATATCCAGATGATGGTG 58 114474879 114474899 TTCCTCCTTCTTCTCTTTGTC 57 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179 2 1 2 85 15 3465295 3465313 GAGGTGATTAACCAGCCGA 60 3459790 3465246 ATGATGTCATTGCCCTTGC 59 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 3 1 2 81 1 81689173 81689259 ATCTGAATGGGTCTCTAGGC 59 81689303 81689321 TGGATCACTATGGAAGGCA 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000080035 3 1 2 147 13 47962096 47979433 CTTCAAAGAATGTCTGTAAGGC 58 47961153 47961171 ATGAAACCTGTGTAGGTGC 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055 3 1 2 81 13 47962104 47992973 CCAACCTTCAACAAGAATGTC 58 47962043 47962063 CAATCTTCTGCTTGATCTCCT 58 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127 2 1 2 80 9 100285260 100285279 TATCAGTGCCTACTCCTGGT 60 100285322 100286252 GATGTCGATGCCTTGTTGG 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 1 2 3 81 11 82753120 82753140 GCTGTCAGTCTGGTATTTCTC 59 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 2 2 2 80 1 84161758 84161866 GCTCCATCTATTATGTAGATGTGC 59 84161701 84161719 CTCGGTAGAGCTCACTGAC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 3 3 7 119 15 34646202 34694159 TCAACACTGAAGGAGGAGAG 59 34646102 34646121 GGAAACCACCACAGTAATGG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 1 3 7 97 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054 1 1 2 80 1 100713389 100716856 AGTCCTGTTTCGAGGATGG 59 100716899 100716918 CCACCAACACCATATTCCTC 58 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 2 1 1 133 15 34252041 34252060 TAACTCTCGGACGATCTTCG 59 34252506 34252524 CTACACGTCGAGTAGCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 3 2 2 80 5 59081657 59081676 GTATCCTGTCTACTCCACCA 58 59081716 59081834 CACTGTAGGAGTATGATTTGGA 57 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000080840 3 1 4 155 1 81779928 81780024 ACCATTTAGAGGTGAACCCA 59 81783700 81783718 TTAGCATGTCAGCATGCAG 59 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799 1 1 3 89 13 113840134 113840152 AGAAGGCAGTTCTCAGAGC 59 113836273 113840086 GGGAGTTTACATATCACTTGAGAG 59 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 1 1 1 68 X 70428340 70428358 TGTCTGATGCCATCAGTCC 60 70428053 70428071 CAAGGATTCTGCACTGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 3 2 2 88 12 25002392 25005302 GAAGTATGGTGCTGGAGGA 59 25005354 25005372 CTCCAATCCCAGGAATTGC 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808 3 3 4 80 5 127579968 127596261 GTCTCCAGCTTGATGTCTG 58 127596305 127596323 GTAATATGCCACGGTGAGG 58 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 3 2 3 81 18 62852095 62852315 GCTATTGTGACAATCGTTTCAG 58 62852357 62852375 CTGACCGAAACTGGTTCTC 58 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 1 2 2 80 15 34297862 34297882 CATATCCTAGAGCACCTACAC 57 34297922 34298324 AAGAAGCAAGCTAGGTAAGTC 58 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 2 2 2 80 15 34297859 34297877 CAGCATATCCTAGAGCACC 57 34297920 34298321 AAGCAAGCTAGGTAAGTCAG 57 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173 2 1 2 116 4 57419079 57443587 AGATGCTAATGGCCTGGTC 60 57443666 57443685 GATATCCTGGTGGTCACTGG 60 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 3 2 2 81 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749317 136749335 GCAATCATGGTGGTACAGC 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 2 5 5 80 6 80255295 80255314 CCTAGAAGACACTGCTTCCT 59 80256813 80257355 GAAGCATTTAACTTGGCTGC 58 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010929 2 1 2 82 7 31792250 31792268 CCGGTTACTGCAAACAGAG 59 31792311 31802343 CGCATTTCTGATACTTGTTGGA 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000044147 3 1 2 80 4 181426161 181426180 TGGAAGATTCAGAAGGGACG 60 181426223 181427888 TTCATGAATGGGAGCACGT 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000086078 1 1 3 80 12 31578538 31578558 TATACTCAGAGATGCAGCTGG 59 31578599 31580987 TATGGTATTCCTTGAGGGCG 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709 1 1 2 80 6 135214178 135214199 TTCTTGAAGACTGTCTAGTCAC 58 135214240 135224102 ACAACAAGCCCACTTTACC 58 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 1 2 2 80 1 216871418 216871732 CAATATGAGGACTACAGCCC 58 216871357 216871377 CTGTAGAGTGTGAAGAATCCC 58 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382 1 1 3 80 X 9891457 9949763 GGGTTAAGTACAGAAGATCTAAAGC 59 9949799 9949819 CTCCAACAGCTCTACAATGTG 59 NA Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000077146 3 1 2 81 7 12491071 12501653 TTCCTCAGGATCCTTCATGC 60 12501695 12501715 GGGATATCTGACAGGGAATCC 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104698718 104718645 TCGGTCTTAATTCATGGTGC 58 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 2 1 1 60 1 13171424 13171442 GGTGGAGGAAATTCATCGT 58 13166111 13166131 AAACTTCACACTCAGTTTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598 1 1 2 156 6 33841568 33856955 GATTTGGCTCATCAGGAGG 58 33857075 33857093 GATCTGTTATAGCGGAGCC 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000047854 1 1 2 80 5 173610905 173610924 CTGCAACATCTGCTTGATCC 60 173610411 173610863 CCAGGTTTGTAGTTGCTGAG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245 3 1 2 90 8 22620571 22620589 GAATGCCTACTGCCTACGA 59 22620643 22620939 ATCCCTGTGTTGGCTAAGG 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083 3 1 2 92 2 104785114 104785132 AACCTGGTTACTCCACTGC 60 104785184 104788637 CCAGACTTAGTCTCTTGATTTGG 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000082627 2 1 2 81 2 104785122 104785140 TACTCCACTGCCATGTGAC 59 104785184 104799771 TGAGACGATGCTTGATTTGG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595 3 1 2 80 1 177157024 177157045 AGAACATTAAAGAGAAGGCAGC 59 177157083 177158513 GCTTAGACAGGAGTTTATCCTG 58 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 80 8 39404676 39404694 GAGAACTTTGTCCACCAGC 59 39392766 39404634 CTTCACCATCAGATTGTCCAG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 80 8 39404676 39404694 GAGAACTTTGTCCACCAGC 59 39392766 39404634 CTTCACCATCAGATTGTCCAG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000006624 3 2 3 90 15 109738253 109738271 CAGAGGAGGAAGTCGACAG 59 109735775 109738200 TATTGGTTTGGGAGCTGAGG 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100 2 1 2 93 10 49288915 49288933 AGTTGATGCCAGAGGTGAC 60 49288989 49289049 TAAATCAGAGTCCCTCTGCC 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000079535 1 1 3 80 8 82151386 82151404 CCATCACCCTGAACAACCT 60 82151444 82153491 GACTGACATTGTACCTTATCTGC 59 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000066037 1 1 2 99 7 11695642 11695788 AGTTACAGAGATGGCAATTCC 58 11695563 11695581 AGATGTCTGCTTCCTGGTC 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193 3 1 2 80 3 172723048 172724749 CACCTGAGCTTCCCTATCC 59 172724793 172724811 ACAGTTCTTTCCTCCACCG 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769 3 1 2 81 10 55577102 55577120 CACCCTCCTGATCTAGACC 58 55576855 55577057 AAAGACGGCGATCTTTCAG 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000014709 2 1 5 99 2 1500247 1500268 CCAGAGTATAGGAAACTTCTGG 58 1455435 1499064 ATGTTGCATCTATAGCATGGTC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 1 3 5 80 2 1494398 1494416 AAGGCAGGAGAAATGTGGT 59 1493434 1494357 TTTCCATCTTTATCCTTGGCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 1 2 3 83 6 132773942 132773960 TGTGAAGTAGACGTGTCCT 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 1 2 2 81 5 166915701 166923310 GAACGGACTTGATCCTGAG 58 166915638 166915656 CAGACGTTCCTTTCCTAGC 58 NA Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 3 2 2 80 X 153556533 153556918 CAGTATTATGCTACCGATGCT 58 153556473 153556494 TGGAATACTTCATAGCATGGTC 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789 1 1 2 80 10 15196966 15197074 CGAATCTCTAGGCAATGACAC 59 15197115 15197134 CGGTAATGTTGGAAGAGTGG 59 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000034642 2 1 2 102 14 38111107 38116057 CATTACCAGAGCAGTGGGA 59 38111023 38111041 TATGAGAACGCTCAGAGCC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000086509 3 1 4 109 8 117890907 117890925 GTTCCATTTGCCCAGTGTG 60 117889601 117890834 CAGTTGCAATCCCAAGGAG 59 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 2 2 2 81 11 86839223 86839246 GGAGTATATTCAGCCAATACTGAG 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704 2 1 8 80 1 226463362 226480826 AAGAAAGCCATCAAGTTGCC 60 226480869 226480887 AGACTCATCATGTGGCGTC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036168 2 1 8 80 1 226463308 226463326 AAGAACTCCTTGGAGACGG 59 226463369 226471448 GGAGTCCTCGAAATTGATGG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036180 3 1 8 85 1 226467055 226467073 TTCCTATCCTCCCAAGGAG 58 226467122 226471446 AGTCCTCGAAATTGAGGGA 58 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 1 4 8 80 1 226463360 226467001 AGAAGAAAGCCATCAACGAC 59 226467041 226467062 GATAGGAACTCCATTTCTGCTG 59 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 1 2 2 91 3 118111421 118112963 CTGGATAACACTATTCATGGCC 59 118111351 118111369 AGTGCAGTATATCGGGCAC 60 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 3 2 2 112 18 24728855 24731481 TCTATGAGTTTGAGGGCCG 59 24731807 24731825 GTTCATGGCCTTGATCACG 59 NA Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 2 2 2 80 10 15705208 15705229 TTTACCAGAATGTTCCCTCTCC 60 15705269 15705984 CTATCCAGGTCTGGAAGTCC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 2 3 4 81 17 34832491 34832509 AGTCTCTGAAGAGCTGAGC 59 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011 3 1 2 80 10 17496326 17497930 GTAGAAATAGTTCTTCCTTCCAGG 59 17510922 17510940 GCTTGGCTACAAAGTCTCG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 3 5 5 80 13 55080386 55080404 ATGATCTGGGAGCAGAAGG 59 55079662 55080345 ATATTCTGCACACTTGTTCCTG 59 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 3 2 2 89 7 12877160 12877178 GCTGATCTGCAAGTCTGAG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 3 2 2 80 20 25064981 25120703 CATCGTGTCAGCTTTGGAC 59 25064919 25064938 TTCACTGTTTGCACTACAGC 59 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 2 2 2 80 10 55494368 55494386 CTACATTGAGCGAGTCCAG 58 55494430 55495384 GTGATAACCACCTTGCTGG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000012681 2 1 2 88 5 134484680 134484698 CTCGAGAAGTTCCCATCCA 59 134477708 134477822 ATGCTCCAAGTGACAACTG 58 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 3 2 2 80 4 57805012 57805033 TTTATCAGAGTGCTATCAACCC 58 57803190 57804973 TATTTCTGCCCTTTGGAAGAC 58 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 3 2 3 81 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973767 70974217 ACAGTTAGTAGTACAGCAAGCA 60 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219 1 1 2 86 7 114523676 114523694 CATGCAGTCTCTGTGTCAG 58 114504783 114507019 ATAATCCCTGGTTGAGGGC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079108 1 3 5 80 3 8582484 8584234 CAACATCCAGAGCAAGCAC 60 8584277 8584296 ATAACTCCACGGATTCGGTC 60 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 1 3 5 109 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572867 71579459 TCATAGATGGCGACCTCCT 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 3 2 3 80 13 57008468 57008486 CCTTCACAATGATTGGGCA 58 57006167 57008426 GATCTGTTGCAACACATTGAG 58 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619 1 1 2 113 9 79523411 79530240 TGTGTCAGTGGTAACAATCC 58 79523317 79523335 GTCATCATCTGCCTCTGTG 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000077999 1 1 3 80 8 78009895 78019506 TCTTCTACCCAGCACAACAG 60 78009834 78009852 TCCAGGACTCTTGTGTACG 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 1 3 4 80 10 23952934 23969021 CTGGAGTGAGTTGATAACTCCT 59 23969061 23969080 AATGTGACTTCCACAACACC 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 3 2 3 81 13 56215359 56216199 CTGAGACACAAGGACAATGAG 59 56216240 56216260 CATGGTGCAAGGTGTATACTG 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 3 2 3 102 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654707 120654725 TGAGGATGAGACATTGGCA 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 3 2 2 108 19 10131817 10136921 CACCAAAGATGATTTCAACGAG 58 10131504 10131524 GTACTTGTGACAGAGCTTCTG 59 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 1 2 2 80 7 37141470 37141490 GTGAGAAGCTGATGGATAAGG 58 37141531 37142622 TTTCCTTCAACTGCTCTTCC 58 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 3 1 1 60 5 58198206 58198224 GTCTGGGAAGAAAGGAAGG 58 58198081 58198100 CTTGGAGTCTGTCTGTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151 1 1 2 80 5 147138370 147138388 GAGACTGCTAAGCTTCGAC 58 147134782 147138326 ATGCACAGAACCATCTTGG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053 2 2 3 80 19 62104070 62104757 AACTGGAGGAGATAAGTAAAGACC 60 62104013 62104033 GTGTAATGCCCAATTTGACGA 60 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000045647 3 1 2 61 7 130546889 130546907 TCCTGAAGGCAAGATTGAC 58 130547602 130547620 TGTCTCTGCACATGAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 2 2 2 90 5 4971314 4971334 GACTTAAAGAAAGCAGGAGGA 58 4959567 4971263 GGACAAACCAATACCTTGTG 57 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368,ENSRNOT00000066233 1 2 2 108 7 117002973 117006988 CTACACATGTGGCATGCAG 59 117007060 117007078 TTATTCCAAGGCCCACCAG 60 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 1 2 2 80 13 67143104 67165134 CGATATGCTGGACACTCCT 59 67143042 67143060 AAGTGTCTTGTTCGCTTCC 58 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000040334 3 1 3 88 X 71193903 71193924 TTATAAGACCTCTGTGTACCGG 59 71193973 71194161 ACATTCCCTGACTCTGCTG 59 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000032273 3 1 2 80 14 44908630 44908648 TCTGTTCTCTTCAGAGGGC 59 44908691 44917735 GATTGTCCAAGGATAGCCTG 58 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070 2 1 2 81 5 152629968 152629988 TTGGACCCTTATGAAGGTCAG 60 152630031 152630970 GTGAACAAACAGACGCGAG 60 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 2 2 2 80 7 144316260 144316281 GGAGTTAGAGGATGACATCCAG 60 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463 1 1 3 116 2 235691791 235691810 GCAGATGGTCCTATAGGACC 59 235703211 235704473 TCCATCTTTGCCAGGTAGC 60 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 2 2 2 80 7 77159285 77159305 AGTGTCTGATACCTCAGAGGA 60 77159132 77159244 GGAGTCAAACAGAATGCTGG 59 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000085626 2 1 2 114 7 77158473 77158494 TTGTTCATGCACTCAGTGC 59 77158377 77158395 CAATGGGAGACAGTCTGGT 59 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000078392 2 1 2 191 X 15040726 15041146 CATGGGACCTGACAGTCTC 60 15042902 15043006 AACTGAAGCCATGTAGGAGG 60 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491 1 1 2 81 X 15038909 15039041 TCCTTCGCAACAAGAAACG 59 15040850 15040868 AAGTGGAAGGAGACAGCAC 60 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808,ENSRNOT00000072280 1 2 2 60 6 142418741 142418764 CAGACTAAAGGGTCATTGAAACTC 60 142418704 142418726 CATAGGTATCGAAGGTGAATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 113 18 56316004 56325239 TACTGGAGCCGATATGTCC 58 56315909 56315927 GAGAAACACGATGACCCAG 58 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000091220 3 1 4 112 18 56307108 56307126 CACTGATGGTACACATGCG 59 56307011 56307032 TGTCTGGTCCATCATGGAC 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000091292 2 1 3 105 1 214157220 214159067 GACCAGAAGACTACACTGTG 58 214157134 214157153 TTGGTATTGTTGGATCAGGG 58 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 3 1 1 61 11 71757640 71757659 AACCACAACCCTGATATCCT 59 71756189 71756207 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 2 2 2 80 18 28423981 28423999 TTTGCGTTTCTGGTTCCAG 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 3 2 2 81 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 1 1 2 81 7 54022218 54022236 TTGAGGGTGAAGAGGAGGA 60 54022279 54022528 GGAACACTAACCTGTGTACAC 59 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 3 2 2 80 7 41194814 41196137 GATTGGCAAAGCAGGTCTG 60 41196180 41196199 ACCCAGAAGGTATCGATCAC 59 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000030327 1 1 2 92 1 28564280 28569651 CGATATGAGGTACTCCATCCG 60 28572307 28572326 GTTGTCTCAACCCTCTCCTC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643 2 1 2 80 4 11610443 11610464 ATAACCGTTGAGGACTTTATGG 58 11497517 11610406 GCCGTAATAGTTGTCTTCATAGG 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000084933 1 1 2 84 7 70335917 70335935 CACAGTTTATGTGGCCGAC 59 70335982 70336002 AAGATGAGAACTACAGCGCT 59 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000065521 1 1 2 104 13 69777981 69777999 CTACAGCTCATCTGCCTCC 60 69765630 69777919 GAGAAATATTCTGTTATGGCTGAGG 60 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002477 2 1 3 80 11 88874546 88875537 CGCGAGACAAGTTAATTCAGG 60 88877141 88877160 GACCACCATCTCCAATTCCA 60 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000066528 1 1 6 80 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132086608 132091522 CCAGAATCTGAGATGCTGC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000044092 1 1 6 106 7 132099959 132099979 CATATGCTGAAAGAGAAGGCG 60 132095048 132098936 CTGCTGTCCTCTTCATCCC 60 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000067176 3 1 3 82 12 41202606 41203217 ATGTCCTAGCATACCAGTCC 59 41205301 41205319 TTCGGAGATGAGGATGGTG 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006 3 1 4 143 16 54293337 54298749 AAGTCTCTGTTTGTGGGCT 59 54298856 54298874 GTTCTTCCTCCTCAGGCAG 60 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 2 2 2 80 4 66144873 66146418 AGAGAACCCAAAGAGACCC 59 66146459 66146480 CCTGATGATATACTCCACTTGG 58 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000066780 1 1 3 80 2 257472583 257474715 AAGGCAGAGATTAAAGACATGC 59 257472524 257472542 GAGCTTTGGGACATAAGCC 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000066780 3 1 3 81 2 257472583 257474714 AGGCAGAGATTAAAGACATGC 59 257472522 257472541 GTGAGCTTTGGGACATAAGC 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 1 2 2 80 X 15099610 15099630 TCAACTTCAACACTGATGAGC 59 15099672 15099967 CCTTGACAACAACCACCTC 59 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 1 2 2 93 10 56768863 56769031 GAAAGGCTTTACGCACTGG 60 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160 3 1 2 80 3 79861436 79865432 CCCAGGTCAAGGACTATGAG 59 79865475 79865493 TCCAGCCTTTGCCATAGTC 60 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 1 2 3 87 4 58839566 58875536 CCAGGATAATGGAAATAAGACTGAC 60 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105 2 1 2 80 5 153685041 153685060 GGAGACATTCTCCTTCTCGG 60 153682981 153684999 TCCTCCTTCTACTACGAGGG 60 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 1 1 1 64 X 15325015 15325033 GAGACTCCTGATGTGGACC 59 15324563 15324581 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 2 2 2 80 11 17549422 17549443 CCTTTACCAGTGGAATGATGAC 59 17549482 17553325 TCTGTTGGATGAATCTCTGGT 59 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 2 2 2 83 4 33929642 33929660 ACATTCAGACGACAGTGGA 59 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083 1 1 2 143 8 56411933 56451242 CAAGGTACCTCGGTAGAGTC 59 56451348 56463486 TTCTTGCAGACTTTGCAGC 59 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 3 1 2 82 4 39519623 39519643 CCATACGTGGAGTTTACTGGA 60 39519687 39521296 AGGATGTTCTCCCTAGGGA 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045905,ENSRNOT00000081945 3 2 5 83 2 258805539 258805558 CCAGATTCTAGCAGGTTGGA 59 258804342 258804670 ATCTTCATAGCCAGGTAAGTCC 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 3 2 2 80 7 15785798 15786679 CAGAGAAATCGGAGAATTCAGG 59 15786720 15786738 CTGTTGGTGGGTCTTTCCA 60 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755 1 1 2 81 6 98437627 98437645 ACACAAACAGTTCCTGGTG 58 98435714 98437582 CCTAATAACCTGGGCATGG 58 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 2 1 1 69 7 102586852 102586871 AATTTCCTTTGGGAGGTGGA 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 3 1 2 80 9 82378288 82378306 CAGCATGTTCTTCAATGCC 58 82377660 82378248 GTGACCATAATAGTGAGGATGAG 58 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000009693 1 1 2 80 6 105465157 105467549 TCAGGAGATGAAGGATCCC 58 105465095 105465113 CAAGTGGAAGTGTGGAGAC 58 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 2 2 2 80 5 64294800 64294819 AGCTCTACTTCCTTCAGAGC 59 64294861 64303956 AAACAGCAAAGGACTCTTGG 59 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742 1 1 2 80 16 84603312 84614348 CTGTCACCAACGGTTTAGC 59 84603250 84603271 GTCTCTGAAATGATGAAGTCCC 59 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 1 2 2 81 2 24670392 24670412 TACACTGAACTGCTGGTACTG 60 24670455 24689819 CAGATGCAAACCTGTAGCC 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 2 1 2 85 20 4120112 4124691 ATCTGAGAGGATCAGTGTCTC 59 4124738 4124756 GTGACATTCACTCCTGCTG 59 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000088705 1 1 2 81 8 117520061 117524681 ACACAGTAGAACAGCTTTCTC 58 117524724 117524742 CCTTGGTCAATGACATGCT 58 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000063821 1 1 4 80 2 18522663 18552905 GCTTTAAACGACCTGATCTCTG 60 18522604 18522625 ACACATAGGAAGTCTCAGTAGG 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839 3 1 4 80 1 139898180 139943413 TACTGATTACTACAGGGTGGG 58 139898120 139898138 AACTTCCGGTACATGATGC 58 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000083401 2 1 3 80 12 37390229 37391582 CTAGAAATGCAGGAGCAGC 59 37390167 37390186 GTTCTTCCTCAGCTTCTCCT 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000083401 3 1 3 81 12 37390230 37391584 TTCTAGAAATGCAGGAGCAG 58 37390168 37390186 TTCTTCCTCAGCTTCTCCT 58 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000081903,ENSRNOT00000078412 2 2 4 80 20 12861795 12861813 AGCACAGAAGAACAACGTG 59 12861337 12861752 TTGAGGAGTCCATACACCAC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000091652 1 1 4 80 14 80054837 80056440 CGCGAGAGTATAAGATTTATCCC 59 80054779 80054797 GGTCTACATCTTTGGGCAG 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 3 2 2 80 9 27441384 27441404 AGCCATTCTCAACTACATTGC 59 27440318 27441342 GCATACATGTCGATGAGGG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302 3 1 2 82 5 137084514 137084534 TGGTTCAAAGACTTCCTTCCT 59 137079263 137084470 CTGATTGGTGAACCACCTG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227 3 1 2 80 8 58382834 58384056 GAGAGGATAATTCAGGGAGTG 57 58384098 58384116 CGTTAGACACAGCGTACAG 58 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 1 2 3 80 X 15756745 15756763 CTTCAGACAGCTTGTTTGC 58 15756026 15756701 TGTTGTGGAAGAACTCTGG 57 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 3 2 3 80 X 15756744 15756762 TTCAGACAGCTTGTTTGCT 58 15756025 15756701 ATGTTGTGGAAGAACTCTGG 58 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 1 2 3 80 3 48293650 48293672 CACATCTATTCCCACATGAGC 59 48293582 48293600 GTGCTCTTGAGTAAGCTGC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099 3 1 2 81 1 178911762 178924160 CTGTCAATGTGAGAGCAGC 59 178924204 178924223 CCCATCATGGTTAGGAAGGA 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000080031 2 1 2 83 17 29026164 29139968 CATCCAAAGATTATGGTGTATGAGG 60 29026105 29026123 GCATTTGCCTCTTCCACAC 60 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 2 2 2 94 5 12143591 12143609 GAGTCCAGAAAGACCACGA 59 12141196 12143538 CATAATCTGTGTCAACTGATCCTC 59 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240 2 1 2 150 12 38520429 38524587 CGGAAGCTGGAATAAATCACG 60 38520299 38520317 CATAGCCCATGGAGAGTGG 60 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372 1 1 2 80 9 27402399 27402418 CTTCACTACTTCGATGGCAG 59 27402458 27403400 AGATTGTTTCTCCTCTACTCCA 58 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 3 2 2 80 7 18530921 18533485 ACTTCCTCATGGACTTGGT 58 18530859 18530877 CCTTTGTTCAGGTGGTTGG 59 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 3 2 2 80 6 7920208 7920227 ACCCTGAGAAGAGAAAGGTG 59 7920270 7924075 TGCTGGTAAACATCAGCGA 60 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 2 2 2 81 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329876 87329896 TTTAGAGGAGTCGACTGATGG 59 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 1 2 2 81 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718827 143718846 TCCGTTTGTTTGACTTTCCA 58 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593 3 1 2 151 13 88000955 88000976 TGAAGTCTGAATTCAGTGAGGA 59 88001088 88002684 GTGGTCAATGTTCACCTCG 59 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 2 1 1 64 9 37057152 37057170 GGTGCTTCTCGTTTCAGTG 59 37057200 37057218 TTGGGATAGTGCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 3 2 2 81 7 18416359 18416379 CACGTAGTATACAAGCGTTCC 59 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000073696 2 1 6 87 13 84491837 84491860 TCTATTACTGTATCATCACCACCC 60 84491905 84522956 TAACCTTTGCGAACCAACAC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000064168 2 1 6 127 13 84513678 84513696 CTTCCTGTTCTTCGTGCTG 59 84513787 84522958 GGTAACCTTTGCGAAAGGC 60 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 1 2 2 80 2 122802604 122803029 TTACTCCGATTTGGAAAGACCA 60 122803069 122803088 GCCATACAGGTTGATGAGGA 60 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 3 2 2 80 10 62687872 62687890 CCAATGTGGAGCTCATCAC 59 62687933 62688825 GTGTCTTACAGCCTTTGACC 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 3 4 5 82 4 176271126 176271144 AGCTTCCTGCCTAAGTACC 59 176270295 176271085 GGTAAGTTATAAACACCCATGAGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677 3 1 2 80 10 87245854 87245875 GACTTAGAAATACAACGTGAGG 57 87245673 87245813 CAGAACTCCCATTTCCTCC 58 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 1 2 2 80 3 1388404 1389496 GGTAATTAAAGGTGAGGAGATCAG 59 1389534 1389553 TGAACACCCAGGATTACAGG 60 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000007998 1 1 3 89 3 129776862 129778068 GTAGCAGAATCAAACATTCCAG 58 129779762 129779783 GTAAGCATCACTGGATTTAAGC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000007998 2 1 3 96 3 129767317 129767335 TATGTTGGATGAGCAAGGC 58 129776865 129778070 GTCTGGAATGTTTGATTCTGC 58 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 2 3 3 112 4 149972333 149972352 TACAGAAGGCATCTGTGGTG 60 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000034889 1 1 3 81 10 87346421 87347101 CCGTAGCTTCCAAGATGGA 59 87346016 87346034 TCCACGTTGACATTGTTGC 59 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 2 2 2 80 10 90300747 90300765 TTTGCTTCTGTTCTACCCG 58 90300172 90300704 TTTACTGACAATCAGCGTGG 59 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 2 2 2 137 1 69615629 69618792 GGGCTGTGTAACCATTGAG 59 69618892 69626054 TACCGATAAACCAGTGAGGA 58 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000080945 2 1 2 80 X 156926054 156926072 GACAAGGAGGACACTCAGG 59 156926113 156926626 CTCTTCATTGTCACTGTACTCG 59 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390 3 1 2 80 X 156926064 156926082 ACACTCAGGTAGATTCCGA 57 156926220 156926624 CTTCATTGTCACTCTCCAGG 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 140 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634 3 1 2 92 7 15242240 15247388 AGGAAATGGAGCCAGTGAC 60 15247442 15247462 TGTAGAGCTTCTTCTGACTGG 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928 1 1 2 82 9 40972109 40972127 AGTGAGGAGCTTCTTGGAG 59 40972171 40975097 CCTTAATGTCGCTGAACTCAC 59 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 3 2 2 80 5 135442343 135442484 GACTCCGGAGATTATGGCA 59 135442525 135442546 TCCTCTGTCAGTCTCTTTAGAG 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 1 3 3 80 7 68447234 68449554 CCTGGCTGGTAAATTGCTC 59 68447172 68447193 CCTGATGATAACACGACTATCC 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118086 87120488 GATGGAGACAGAGGAGACAC 59 87118024 87118043 GTCCTCAGGAGTAGATGTGC 60 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 3 2 2 80 4 66418801 66420760 CCAGACACATTCACCATCTC 58 66420803 66420821 CGTCAGACACTCTGTTGAC 58 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 2 2 2 81 12 46989767 46989785 TTTCTCAAAGGAGACGGCT 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 89 10 109900902 109901401 AACTGAAAGTGGTCGGGAG 60 109901454 109901472 CTTTGAGCCGCAGTTTCTC 60 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157 3 1 2 81 9 38344792 38345758 GAAATCATAGGAGTAACGAAGC 57 38345798 38345818 ATTGAGCTTCTGTCCATATCC 58 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 3 2 2 80 1 205911925 205911943 CAGTGGCTTAGGTTCTCCA 59 205911987 205922924 CTTTGTTGCGTAGCCTGTG 60 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000026051 2 1 2 143 2 210868865 210872890 AGAAGCTCGAAGTGGTCTG 59 210868501 210868758 CTGAACAACTCCTCAGCGA 60 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 1 2 2 106 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 1 2 2 130 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702047 21702065 TGAATTGCTGCCTTTGCTC 59 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 1 2 2 80 11 38075287 38077323 AGACATGGGATACAAGAACAG 58 38075227 38075246 TTCAGCTTCATAAAGCTCGT 58 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000080755 3 1 2 85 1 67848151 67848170 TGCTTACAGGACTGAATTGG 58 67832563 67848105 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000085857 1 1 2 101 2 25088069 25088087 TTATCAGACATCCAGCACG 57 25087850 25088007 CTTGAACCTTTCTTCTCTTCAG 57 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124 3 1 2 80 1 244757838 244776570 ACAAGGACAGGAAAGAATCC 58 244776612 244776631 TTGTGACAGAGAAGCATGAC 58 NA Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 3 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726068 TTCTCTGCTGCATAGTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 3 2 2 81 10 88160540 88160558 AAGAGCGAGATCTCTGAGC 59 88119257 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 2 2 2 80 10 88160539 88160557 AGAGCGAGATCTCTGAGCT 60 88160388 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000084012 2 1 2 89 7 70372196 70372214 ACAACAGTCAAAGTCCCAG 58 70372267 70372286 TCATATCCTGACCAACCCA 58 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230 3 1 2 81 7 70372587 70373498 CCTTAGCACCGACTGTACC 60 70373543 70373561 CTGCTTCTTCACCATGGGA 60 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 3 2 2 80 2 206591827 206591847 TCAGAAAGGATCGATTGACCA 59 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 1 2 2 87 1 219441020 219441543 ATGATGAATGCAAGAGACGA 57 219441593 219441611 TCTACAATGGCTGCAATGG 58 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185 3 1 3 80 8 78421174 78421195 ACACCATACTACTCATTCTCTG 57 78415909 78421135 TGCTTGTAAAGGATCTAGAGC 58 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000035915 2 1 2 91 16 9602072 9607680 CTGTTTGACAGGTTTCTGGA 58 9607734 9607752 ATGTTAGGGCCAAAGACAG 57 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208 3 1 2 80 16 9606670 9607679 GATACATCTGCAGGTTTCTGG 59 9607721 9607739 AGACAGTTGCCAAGTTCTG 58 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 3 2 5 112 1 215672160 215673425 CAGGAGGAAGAGGAAGTCC 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 3 2 2 81 16 9650715 9650738 CTACCTTCTCTATCAAATGCTGTG 59 9640819 9650678 ATTACTAGGCTTTAAGTCCCGA 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940 2 2 5 80 7 80775933 80777742 CAGACGTCTCCAGATCACC 60 80777786 80777804 GATTCTGGCTCCAGGTCTG 60 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 2 1 1 135 1 100811778 100811796 GTTGAAGAGTCGGTGTGAG 58 100824888 100824906 GCCTCCAAAGTTAAACCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 3 2 2 80 7 123412247 123412767 ACTGGAGTCAGGTTCTGGA 60 123412809 123412829 AAGACAATCACACCGTTTAGC 59 NA Rattus norvegicus 81 LOC100362827 ENSRNOG00000030748 ENSRNOT00000042543 1 1 1 60 2 57728908 57728927 GCTGAAGGGAATGCTAAAGG 59 57728867 57728885 CAGATCTTCTCTGTGGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362827 ENSRNOG00000030748 ENSRNOT00000042543 2 1 1 60 2 57728892 57728911 AAGGAAACAAAGCCAAGGTG 59 57728851 57728869 TTAGCAGACAACCTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox6b1 ENSRNOG00000034161 ENSRNOT00000045155 3 1 1 61 2 211337343 211337362 AACCAGACTAAGAACTGCTG 58 211337386 211337404 GTCATTGCCTTCTCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 3 2 2 80 8 59298350 59299800 CACTTTGTTTCCAGTTCATCC 58 59298290 59298311 GTCAAAGAAGGTGTGAATACAG 57 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 2 2 2 80 5 62164778 62165734 TGATTACAAGGTGATGGTGTG 58 62164718 62164737 TGGTGACAGTTGATTGTCCT 59 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000090673 2 1 2 94 7 14363847 14364172 GGTTTAGGCTTTGTCCAAGG 59 14357846 14363796 CAAGTTCCATATCCATAATCACAGG 60 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000057473 1 1 2 130 2 172349988 172458485 TCTGCACAGAAGAATGAGAG 57 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255 2 1 2 60 3 77153137 77153156 GCGTTTCTCACATTACAGTG 58 77196833 77196854 CGCATATACACAAATATGCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000083915 2 1 5 93 9 28732773 28732791 TGATGGATGTGGCCATCTC 60 28667071 28732719 ATACCTTTCATTGTTCGATCGC 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 1 2 6 80 10 89217313 89217332 ATAGCTTCACTCTGATCGGG 59 89217147 89217270 GGTCTCCAGTGACCTTGAG 59 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 1 2 2 80 12 48345339 48346500 ATTGGAAGAAATGTGCTAACCC 59 48346541 48346559 GTAAACGTAGGCTGCTTGG 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 1 3 3 81 12 46801167 46801915 ATCTTGGATAAAGTGGTGACAG 58 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649 1 1 2 104 2 34255467 34258835 TGGTGAAGGTTCTGGAGTG 59 34258902 34258921 GACAGTCATGACAGACTGTG 58 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000081570 2 1 3 168 14 81014710 81023368 TTTCATTGACCAGCAGTCTG 59 80995558 80995576 CTCAAATGACACTGCCCAG 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287 3 1 2 85 2 247248625 247281849 AACCTCCGGTCTCATTGTG 60 247281898 247281916 ACCAGTAATCTTCAGGCCC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000042331 2 1 3 147 12 43462062 43462080 GGAGTGCATCCTTAACAGG 58 43457312 43459914 AAGTTTATGGCACCTGGAG 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223 1 1 2 80 8 32545797 32545906 ACCAGGCTTTCTGTAAGGA 58 32545945 32546701 GAACCACATAGTCAGTTCTTACTC 59 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000005958 2 1 2 80 7 83501693 83502113 GCAGCAATTGAGATAAACAGAG 58 83502154 83502172 GCGGTATCCTACTCTTCCA 58 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000037662 1 1 2 80 8 118402982 118403000 ATGAGGCACGTGATCTCAC 60 118405414 118408120 CCTCTTCTGGTCTTCCAGC 60 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425 2 1 2 86 1 219136777 219137081 TTAGAGACCTCAACGAATCGG 60 219136711 219136729 TGAAGGTCTTCTCCAGCTC 59 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 1 2 2 80 3 80575061 80575079 CAGCAGGTTCTCCAAACTC 59 80575122 80575279 GGCAGATACCTGTACAAGGA 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366 3 1 3 95 10 89183379 89183398 GAAGTTGAGATGCTCAAGGG 59 89183455 89184386 AATCTCCTCAGGTACCTGAC 58 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000039696 3 1 2 127 8 115255798 115255816 GGTGGAAGGAGACAAAGAG 58 115252085 115252659 TTAAAGGAAGGAGCTTTGGT 57 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513,ENSRNOT00000084506 1 2 5 80 13 34502020 34502040 AGAGAAGAGAAGCAAGATCCC 59 34502079 34515338 CCAAACCGATCTAATCCAATCC 59 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641 3 1 5 81 13 34489088 34489106 TCCTCATCCTCAGGTTCCA 60 34489150 34491431 TGGCAGTACCGTCTAATGAC 60 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 3 2 2 81 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628546 7629169 CAAGGGTAATTCCTATGCTCTG 59 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 2 2 2 80 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628545 7671882 AAGGGTAATTCCTATGCTCTGG 60 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000036502 1 1 2 91 X 26357789 26357943 GTAAGACAAGAGATGAAACACC 57 26357715 26357733 GCACAGAATGAACATGTCC 57 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655 3 1 2 80 X 26354255 26357949 AAGCGAGTAAGACAATTGCG 59 26354194 26354213 CACATCATGAACACTGTGCT 59 NA Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 3 2 2 84 10 91101007 91101025 TTAACTCCATCACCCACCC 59 91098702 91100959 ATCACGTATCGGTACCCTC 58 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142 1 1 2 161 8 128790556 128794277 CGCTCATGTTACATCCAGTG 59 128795218 128795236 AGAACACAGACAGCATCCC 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000085698 3 1 2 81 5 75211366 75211384 GCAGAAGAAAGCATAGTGC 57 75210177 75211322 ATTCGTGAAAGACCTGACTG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 3 2 2 80 20 50447314 50448806 TCCTAAAGGGAAGAATGAAGGTC 60 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 2 2 2 80 2 252275978 252280096 ACGCCAAACTTAAGGAACAG 59 252280139 252280157 TGCACTGTAGCTGTCTGTC 60 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 2 2 2 80 9 56111 56129 ATGGCAGAGCAAATGATCC 58 56170 57790 ATGAGCTCATCGTTACTAAACC 58 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911 1 1 2 83 9 118428 118959 GCTGTTCCTTCTATATGTTACCC 59 119002 119020 ACTGACTCGACGAATACGG 59 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 3 2 2 88 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616319 128616337 TCATGTTGAACACCTCCAG 57 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 1 3 3 80 5 61604367 61604387 TAATTCCTACCGAGGCTTCAC 60 61604426 61606802 TGCCTACATACCTGATAACCAC 60 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 1 2 2 107 10 37595145 37599644 GATGCCTACGATAAAGTTGC 57 37599714 37605553 ATTCCCAAATCTTCCAGCA 57 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000077938 2 1 2 128 2 39455746 39455765 ACAATGGGAAAGTTAACGGC 59 39455856 39460696 ATACATGGCAATGGTGCAG 59 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000077938 3 1 2 130 2 39455744 39455764 TCACAATGGGAAAGTTAACGG 59 39455856 39460696 ATACATGGCAATGGTGCAG 59 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000083579 3 1 2 97 16 32512843 32512862 TTTACAGTGACAGACCACAC 58 32512920 32516233 AAGACAATCCCATTGTGAGTG 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 2 3 3 80 9 51469350 51469368 CTTGGCAGTACTGAAGTGG 58 51469412 51479677 GTGTCTTGCAAACTTCAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144 1 1 2 80 14 82277221 82278995 ACTGTACTCAAGACTGCAGG 60 82277160 82277180 ATCCTCAAAGGTGACATTGTG 59 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 2 2 2 85 1 127715292 127721450 CCGTCACATAATGAAGTTTACG 58 127721495 127721514 TTCTGGCGAATTCTAAACCA 58 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000082138 1 1 2 89 5 157899480 157899498 TCCTAACCTGAACCAGAGC 59 157899550 157900278 GTTTCAGAACTCTCCAGGAC 58 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 1 1 2 70 10 62053945 62053963 GCATTTCTGGAGGACACAG 59 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139 2 1 2 80 7 94491066 94500825 GGATCAACAGAAGCTGAAACC 60 94491006 94491027 AGGTTCAACACTTCCATTAAGG 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 1 2 2 80 8 59582909 59584576 CTGGTTGAAGCAGGAATGG 59 59584614 59584638 GGAACACGTATAATCTTTATCCCAC 60 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000050275 2 1 2 88 9 52698707 52698725 GTTCACATGTGTAGCCTGC 59 52698775 52705928 ACTGTTATCTTGACCAGAGGC 60 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143 3 1 2 89 5 157347612 157347630 CAGAGTGGAGACCAGTGAG 59 157346795 157347559 TGCTTGTTTGTGACCTTCG 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 2 3 3 80 10 82245418 82245439 CTGTCAGCAATGTCTTACAAGG 60 82244763 82245378 GAGGAATGTGTTGCTTCGTC 60 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000092200 2 1 2 99 8 23146189 23146605 TTCCTCCAGCATGGATACG 59 23146108 23146126 GAATCTCAGGGTGGAAGCT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 1 1 4 80 8 39191085 39191104 AGAATTTCACGCAGAACCAG 59 39190003 39191042 TCCCAAGGCAATTCTCCAG 60 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 3 1 4 80 8 39191218 39197580 CTCTTGGATGAAAGGGATAATCTC 59 39191161 39191182 TAAGCGCTCACGATTATTATGC 60 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184 2 1 2 93 3 161426095 161438676 GGAAGACGTCAAAGGTGAC 59 161438732 161438751 GTTCCTGCCATCATACTCTC 58 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 3 2 2 81 8 129225855 129226052 CATTTGTGGCATTTGCAGG 59 129226096 129226115 TCATTGAAGGAGGTAAGGGA 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108 1 1 6 80 5 158121982 158122140 CAGGGTCATAGGTTCACCA 59 158122183 158122202 GTTGTTGATCTCCTCCACAG 58 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000077964 1 1 2 91 1 73727919 73727937 CTCAAGGAGGTGCTACAGG 60 73727622 73727864 CAAGCCCAAGATTGTCCAG 59 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 1 2 2 80 5 78154293 78155316 TGACTAAGGTCGAAGAGTTACAG 60 78154235 78154254 TTGTTTCCATTGTGACCGAC 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000051290 1 2 3 82 8 127243009 127243031 AACTACTGTCCTAAGATTCCCTG 59 127243073 127248302 TTCGGAGCCATGACATCAG 60 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838 3 1 2 83 8 118174107 118182324 CAACATGGCAGCTTCTAGG 59 118174042 118174061 CCAAGAGCTCTTCCAATCAC 59 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000048764 1 1 2 80 8 118174104 118183375 CTCTCGAGCTTCTAGGGAC 59 118174042 118174061 CCAAGAGCTCTTCCAATCAC 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 3 1 1 61 2 52171450 52171468 CTTCCTCCACAAATTGGCG 60 52171285 52171304 ACTTGAGGAAATGCTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 1 2 2 80 2 227181288 227188186 CTTTAACAGAGTTGCCACTCC 59 227181228 227181246 CGTTCGAAGTCTGGAACCT 60 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330 3 1 2 82 16 74327612 74327630 CTTCCACTTCCTGCAAGTC 59 74322813 74327567 GCTCAATAGTGAAGCCACTC 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 2 3 4 84 3 56886775 56886879 TCAGAACACAGTCACTATTCC 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 1 1 2 85 5 156681757 156682198 CCTCGTTATGAAGAACTACCC 58 156681692 156681710 AGGTCATCATGGTAGCCAG 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 2 2 3 80 3 80718515 80718533 ACCTCCTCTTCTTCCTCAG 58 80718577 80732040 ACCATTGTCCTCAAAGTCC 57 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000030119 3 1 2 85 3 162465035 162465654 TCAACTCTCGACCCAACTG 59 162465703 162465721 CAGACCATACAGCAGGACC 60 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392 3 1 4 80 16 81623911 81624348 CAACCATCCTACAGGTTTCCT 60 81624390 81624408 TGTACCAGGGACTTTCCCT 60 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 3 2 3 84 3 153451936 153451955 ACAAAGATCCAGGTTCAACC 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 3 1 1 102 16 75400904 75400923 GTGTCTGTCTCCTTTGAAGG 58 75401575 75401593 CTTTAGGTCCGCAGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823 2 1 2 81 3 170994207 170996203 GTGTGCCCTCTAGTTCTGAG 60 170996246 170996265 GCTTCATTTCTTGCCAAGCT 60 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 2 2 2 80 3 60029779 60029797 GACAGGAATGAAGCCTGGA 59 60029836 60032578 GGAAATATTACGAACTCCTTGGAC 60 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000084866 3 1 2 80 3 155346945 155346963 TATCCGTGATGACCACGAG 59 155347007 155349071 TTGTAGATAACCCAGCGGG 59 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 1 2 2 95 16 81120674 81121764 TCATCCTGCAGCAAATTGC 60 81121823 81121841 GGATGACAGAGTTGGGAGG 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962 3 1 3 80 3 51382077 51382095 GCGGCTATTGTTACTGCAG 59 51372172 51382033 GAGCACACCATTGAGTTCC 59 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 3 2 2 82 3 176445752 176445770 GGTGGATTTGACCCATTCC 59 176444802 176445707 TATGCAGGCAAATATGCCTG 59 NA Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 3 2 2 80 3 80076616 80076635 GAATTGAGAAGGCCTATGCC 59 80076678 80077298 CATATTGTGGGCCCTTCTC 58 NA Rattus norvegicus 81 SNORND104 ENSRNOG00000051842 ENSRNOT00000077717 2 1 1 60 5 153909202 153909221 TTGACTTCCTATGCAGAGCA 59 153909161 153909179 CAGACTCCGATTTGCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139445.1 ENSRNOG00000059641 ENSRNOT00000091530 2 1 1 60 X 105651452 105651471 TTGGAAGAGACAACAGATGG 58 105651493 105651512 CATTCTTGGAGTAGAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007924.2 ENSRNOG00000061331 ENSRNOT00000085814 2 1 1 60 2 35229204 35229222 CACGATCATCCTGATCCTG 58 35229162 35229181 GCTGAGGAAGAAGTACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060204 ENSRNOT00000082559 3 1 1 73 8 16713658 16713676 ATGCCAGAGTAACGGAGAG 59 16713712 16713731 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059354 ENSRNOT00000080674 1 1 1 60 2 170631829 170631847 GCCCTCTTCCTCTTCACTG 60 170631787 170631808 TTCCAAGAATGTTATCCTCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060836 ENSRNOT00000091638 3 1 1 67 2 198597575 198597593 TTATCCATTGCACTCCGGA 59 198597526 198597544 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000058533 ENSRNOT00000083798 2 1 1 60 5 140989107 140989126 CACTCAAATCTTTCCCAGGC 59 140989149 140989167 CTATAGCACTGCCTGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056936 ENSRNOT00000082328 3 1 1 60 2 221706030 221706049 GCTCTCAAGATTAGCACCCT 60 221705989 221706007 GTTGGCCTTGAACTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106292.1 ENSRNOG00000052599 ENSRNOT00000071951 1 1 1 60 11 65644860 65644878 GCCTTGAACTCAGAGATCC 58 65644818 65644836 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057260 ENSRNOT00000088640 2 1 1 60 8 122644844 122644862 GAGATTAGCATGGCTCCTG 58 122644802 122644820 ATGGATACTGCCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058231 ENSRNOT00000079482 3 1 1 60 8 57323397 57323418 AATGGTACAGAGAAGGTTAGCA 59 57323438 57323457 TGCTTTAGGGATCTGTATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000060760 ENSRNOT00000081657 2 1 1 92 11 7583039 7583057 TCCTGTCCTAGCTCCAGAG 60 7582965 7582986 CCATTAGACAGTTCCTTCTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000060760 ENSRNOT00000081657 3 1 1 93 11 7583039 7583057 TCCTGTCCTAGCTCCAGAG 60 7582964 7582985 TCCATTAGACAGTTCCTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048748 ENSRNOT00000074754 1 1 1 75 11 5746944 5746962 CTTACTGTGTTACGCCCTG 58 5746887 5746905 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053678 ENSRNOT00000084041 3 1 1 60 5 47735907 47735930 CAGTCAAGAGTTTATGAGTAGCTG 59 47735948 47735967 TCCTTGGAGCTTCTTTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056286 ENSRNOT00000079873 2 1 1 60 11 27171111 27171134 GATATGACTACATCCAGTGTTCTG 59 27171074 27171098 GTTAGGCTACTAATCAATCGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060852 ENSRNOT00000091123 1 1 1 60 11 70879931 70879949 TTTGGAACAGACTCCTGGT 59 70879973 70879991 AATCTGGGCAGCTTAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051997 ENSRNOT00000087319 2 1 1 60 8 131897370 131897392 CATTACAGAGAAGATTAGCACGG 59 131897332 131897350 AACGCTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 2 1 1 86 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199325 35199343 CAAACAGTGGTGAGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061435 ENSRNOT00000085580 3 1 1 60 2 176276199 176276220 GGACTATCTTCCCAGAATACAG 58 176276160 176276178 ACGCAGCAACTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055692 ENSRNOT00000086018 1 1 1 67 16 56611597 56611618 GTCAATGAGGTTTATTCAAGGC 58 56611645 56611664 AGGGACATCGACATAAAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056506 ENSRNOT00000090136 3 1 1 84 8 55410605 55410624 ATCCAAGGCACGATTATTGC 59 55410540 55410563 CAGCTCTGAAGTGTACATATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.1 ENSRNOG00000051899 ENSRNOT00000085174 1 1 1 60 1 1726463 1726482 CCTAGTGCCATCCTGATGAG 60 1726422 1726440 ATCTGACACTTGTAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053584 ENSRNOT00000078908 3 1 1 60 X 103014387 103014407 ATGTACATCAGTAGGTGGCAG 60 103014429 103014447 TTCAAAGGGTCACCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061823 ENSRNOT00000082503 1 1 1 60 16 18197746 18197764 GTGTGCTCGATTGAAGAGG 59 18197788 18197806 CTGCCTTACTGAAGACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049473 ENSRNOT00000073795 2 1 1 60 2 230213364 230213384 GATCTTAGAAGCTAAGCAGGG 58 230213406 230213424 GTAACCTCAGTTCTCCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 2 1 1 60 16 76412457 76412478 TGTCTCAAGTGCATTAGTAGGT 59 76412494 76412517 GATGTTCAGAGGTCAAACATAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058164 ENSRNOT00000082335 1 1 1 60 1 118962537 118962555 ACACATGTGTCAGTAGGTG 57 118962576 118962597 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052366 ENSRNOT00000080936 3 1 1 60 16 9834301 9834322 TTAAAGCATTACTACCTCTGCC 58 9834262 9834281 TTTGAAGCCAAGCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061334 ENSRNOT00000079395 2 1 1 60 6 133828794 133828814 GACCAATGATGAGATCTGGTG 59 133828835 133828854 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000057500 ENSRNOT00000078315 1 1 1 107 6 115337029 115337047 TATAGGCATGGCACTAGGA 57 115336940 115336961 CCGCAAATTTCAGAGAATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045293 ENSRNOT00000070560 1 1 1 60 6 114013209 114013230 GACCATCAAATCTGATCTTGTC 57 114013170 114013188 GTGTTAACCATGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012592.1 ENSRNOG00000037223 ENSRNOT00000056241 1 1 1 103 2 198682671 198682691 TTTCATGCCTCTTAGCCAG 58 198682585 198682604 CATCCTGAAGTATCCTTGGG 58 Novel Rattus norvegicus 81 AABR07068066.1 ENSRNOG00000049222 ENSRNOT00000071274 3 1 1 61 9 80685790 80685809 AAATGCCTTCATGAGATCCA 57 80685833 80685851 CTCTTCCACCCTTGATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061586 ENSRNOT00000077572 3 1 1 60 X 156720336 156720354 CTCCTGTTTCCCTTTCCCA 59 156720378 156720396 TCTTCCTCGTTAAGGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058942 ENSRNOT00000091839 1 1 1 60 X 33175814 33175836 GGTGGTGTTCTTATATCAGTCAG 59 33175854 33175874 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000053764 ENSRNOT00000087746 3 1 1 60 1 101121714 101121733 CAGCTTGTGATGAGGATGTC 59 101121673 101121693 TAGAGTCGTCTCATAGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056971 ENSRNOT00000078432 2 1 1 60 2 108115717 108115736 GAGTTGGAATAGGAGCTTGC 59 108115676 108115694 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061829 ENSRNOT00000083749 1 1 1 60 6 95871776 95871796 TCAAGGGTATACGAGTAGCTG 59 95871736 95871756 CATTCTTGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056042 ENSRNOT00000080428 1 1 1 60 X 85123281 85123301 GTTCTTCTGGTTTGCATTAGG 58 85123323 85123341 AAAGGCAATCAGGAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056159 ENSRNOT00000088019 3 1 1 62 X 119402174 119402192 GACTGCTGTATCCCATGTG 58 119402130 119402148 CTGAGCATAGACACAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056416 ENSRNOT00000081745 1 1 1 60 2 116480676 116480694 TGTGTTGTAGGTGGCAGAG 60 116480718 116480736 TCCACAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 1 1 1 66 18 25364163 25364186 AAGGGAAATCCTTTCAAGGAG 58 25364117 25364137 TGGTGCATCAGAAGATAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044954 ENSRNOT00000070221 2 1 1 60 X 21674868 21674886 CCATGCTATCTTGAACCCA 57 21674910 21674928 AGAACCAACACTGCTTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045182 ENSRNOT00000070449 1 1 1 60 X 80217873 80217894 ACACTATCTCATGTGATCTCCA 59 80217834 80217857 CCTATCCAAGTACTAATCAGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044504 ENSRNOT00000069771 1 1 1 60 2 63047412 63047433 GAACTCACCTGATCTTAGAAGC 59 63047452 63047472 TTCTCCCATCCATGTATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034183.1 ENSRNOG00000054643 ENSRNOT00000077854 2 1 1 80 11 56178781 56178804 GAGATTTCACCTCACATGCG 59 56178720 56178739 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07027810.3 ENSRNOG00000053408 ENSRNOT00000080615 2 1 1 64 17 44674571 44674590 TGGACTAGAAATCCATTGGG 57 44674526 44674544 CAGATCAGTTCGTAGTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056424 ENSRNOT00000081890 1 1 1 60 9 51519342 51519363 ATACAGAGAAGATTAGCATGGC 58 51519303 51519322 GGAACGCTTCAAGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.3 ENSRNOG00000055508 ENSRNOT00000082003 1 1 1 61 1 1886090 1886108 TCCGTGCATTTGAGATGAG 58 1886132 1886152 GAGGCTTCGTAAAGAATTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010460.1 ENSRNOG00000061443 ENSRNOT00000087798 2 1 1 81 2 136828542 136828562 ATGATCCCGGTATCTCAGG 58 136828607 136828625 AACGTTTCTTTCCCTCCAG 58 Novel Rattus norvegicus 81 Pi15 ENSRNOG00000017686 ENSRNOT00000023899 1 1 1 80 5 795579 796519 ACTGGAAGATATCGCTCTATTCTC 60 795522 795540 CTGAGGGTAAGGAAAGGCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061287 ENSRNOT00000080889 3 1 1 60 15 88787236 88787255 GACTGATGTGTCACATGAGC 59 88787195 88787215 TGAGCATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 2 1 1 80 1 168073016 168073036 TCGTGTCAACAGTCTCTATGG 60 168073073 168073098 AACACATAGGAGAAGAGGATAAGG 60 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000055787 ENSRNOT00000090555 1 1 1 60 15 28166444 28166462 CCAGTGGATACAATGGGCT 60 28166486 28166504 CGAGAAGAAACAGCTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055153 ENSRNOT00000081568 1 1 1 60 X 125070520 125070539 GGACAGAGGCTATGTCTTCC 60 125070558 125070580 GGTTACTAATCATTCAGGTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035975 ENSRNOT00000054098 1 1 1 60 16 39300287 39300305 GAATGTGCCTGATCTCGTC 58 39300328 39300347 CAAGTACTAAACAGGCCCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056103 ENSRNOT00000085337 1 1 1 60 X 33746769 33746789 CATTTGTAGGAGAACAGAGGG 58 33746729 33746749 GTCACATCTGGTAATGTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054722 ENSRNOT00000085308 2 1 1 67 6 75590252 75590270 CTTATCCATTGCACTCCGG 58 75590301 75590319 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060763 ENSRNOT00000086697 1 1 1 60 X 29292501 29292521 TCCCTAGAGGCATTGTAAGTG 59 29292543 29292561 CTTTCTGCCACCTATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 3 1 1 60 6 29932878 29932896 ACAACTAAGCAGGGTCAGG 59 29932917 29932938 CCATCTGTTTGATGTGGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000049964 ENSRNOT00000064023 2 1 1 80 1 271231990 271233238 AGCTATTCTGTAAGGTCCCA 58 271233281 271233299 CCTTCAGATCCGTACAGTC 57 Novel Rattus norvegicus 81 AABR07009786.2 ENSRNOG00000041563 ENSRNOT00000063316 1 1 1 83 2 112270937 112270958 CACGAATACTTTCTGGTATGGA 58 112270875 112270893 GCATTTCAGACAAACCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055207 ENSRNOT00000085379 2 1 1 60 X 139701067 139701089 GGAACGATACAGAGAAGATTAGC 59 139701109 139701127 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054106 ENSRNOT00000078342 1 1 1 60 X 145875893 145875913 GATGAAGAACATGGCTAGCTG 59 145875853 145875872 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054044 ENSRNOT00000087042 3 1 1 60 2 29930747 29930769 AGAGGAAGATGCTATGTCTAAGC 60 29930709 29930730 TTAGGCTACATTCAGATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000059339 ENSRNOT00000089038 2 1 1 69 8 13869833 13869852 CAGTTCTTTCCTGTTGGGTG 59 13869884 13869902 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD105 ENSRNOG00000060532 ENSRNOT00000077761 3 1 1 60 8 21906942 21906961 TCCTGTCTCATGATGATCCC 59 21906983 21907002 CGTTTACTTTGAAGCCTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000060616 ENSRNOT00000082649 1 1 1 60 10 40824909 40824930 CCCATTTGACTACCACATTTCC 60 40824949 40824969 CTATCCCATAAGCATAGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057422 ENSRNOT00000086088 3 1 1 60 9 86318222 86318241 GAACCTCCAAACAAACATGC 58 86318181 86318199 CTACCAGACACTGAAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD70 ENSRNOG00000051367 ENSRNOT00000085368 2 1 1 60 9 66501665 66501685 GTCAATGATGCATCTTACTGG 57 66501707 66501725 AGTGGTAGTGACGAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060300 ENSRNOT00000081720 2 1 1 60 4 166666774 166666794 CTTAGTGGTAGATCACTTGGC 58 166666734 166666754 TTAATTCTCACAGCTAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000054069 ENSRNOT00000079601 1 1 1 60 10 57319451 57319473 GTTACTAGAGAAGTTGCTCTGAC 59 57319413 57319433 ACTATGTCTCATCCTCATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000056450 ENSRNOT00000091995 2 1 1 60 3 46824619 46824637 ATCACATCCTGATAACGGC 57 46824577 46824595 GACCAGCAGATCCTTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041970 ENSRNOT00000063723 1 1 1 60 1 270635200 270635218 ATGCACCCAATCTTGTCTG 58 270635240 270635260 TTTAAGTACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111831.2 ENSRNOG00000060905 ENSRNOT00000092218 2 1 1 89 6 8346765 8346783 CCATGATTGACAGTGCCAG 59 8346836 8353505 TCTGCTTCAGAACCTGTCG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000055500 ENSRNOT00000078566 2 1 1 60 2 178614276 178614297 AATACAGAGAATGTTAGGCTGG 58 178614317 178614336 AAACGCTCGAAGAATTTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062920.1 ENSRNOG00000052333 ENSRNOT00000087813 1 1 1 60 6 15190516 15190534 GCAGAAGATGGAGAAGCTG 58 15190558 15190576 CTTCCTCGAGCTCATCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056460 ENSRNOT00000090901 2 1 1 60 2 63845639 63845660 GAGAAGATTAACATGGCTCCTG 59 63845680 63845699 GATATGGAATGCTTCACGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Haus2 ENSRNOG00000048933 ENSRNOT00000076309 1 1 1 60 3 112371783 112371801 TTACTGCTGAACCACTTGG 58 112371822 112376249 ATCTGAGATCTGCTGTAATCTC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 3 1 2 93 8 85605735 85605754 CCTGCACATTTACGGATTGG 60 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000055857 ENSRNOT00000077191 1 1 1 62 2 118692316 118692334 AAGAGTCACCTTGGTGGTG 60 118692272 118692290 AAGACAGCCATCTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053964 ENSRNOT00000088785 1 1 1 60 6 133794202 133794221 AAACCAAACATCTGGGAGTC 58 133794243 133794262 CTCAGACTCCCAATGTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061281 ENSRNOT00000077108 3 1 1 66 6 4557249 4557267 AATGAGGTTTCTCCGAGGC 60 4557295 4557315 GCATTCTTCTGAAATGGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016966.1 ENSRNOG00000051721 ENSRNOT00000087303 3 1 1 60 15 5619901 5619919 TCACTGTGATCTTGATGGC 58 5619942 5619961 GGAGGCCTCAGTAGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.2 ENSRNOG00000057986 ENSRNOT00000073132 3 1 1 95 12 2643870 2643890 AACCTAAAGAAAGAGATGCCC 58 2643791 2643816 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 2 1 1 60 6 133825649 133825669 GACCAATGATGAGATCTGGTG 59 133825690 133825709 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039541.1 ENSRNOG00000002321 ENSRNOT00000003156 3 1 1 60 X 79489589 79489607 AATGGTGGTGAGCATAGGA 58 79489629 79489649 GGTTTCCATGGACTTCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001035.1 ENSRNOG00000057721 ENSRNOT00000087018 2 1 1 60 1 35027347 35027366 TCCCTGTTGGCATTCTAGTG 60 35027305 35027323 CTCTGACACAACACATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044660 ENSRNOT00000069927 1 1 1 60 6 116965727 116965748 CACTTTAAACATGCCTGATCTC 58 116965688 116965706 CCATCTAAGTACCCAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.2 ENSRNOG00000060434 ENSRNOT00000079959 3 1 1 99 3 110508427 110572543 GGACACTGTTCTCTGGGAC 60 110572606 110572624 GTCCTGGAGGGTGATTTCC 60 Novel Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 1 2 4 80 3 140323355 140323373 TCAACGACGAGGAAGACTG 60 140323415 140341059 AGACAATGACCTTCCCTTCTG 60 Novel Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 2 2 4 80 3 140310627 140310646 TTCAACTCATGGACTCCCAG 60 140310689 140316289 TCATTAAAGCAGTGGTCGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051527 ENSRNOT00000091483 2 1 1 60 4 130896937 130896960 GGAACAATACAGAGGAAGATTAGC 59 130896900 130896921 TTCACGAATTTGCGTATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056206 ENSRNOT00000079530 3 1 1 77 4 87048938 87048957 AATTGCACCCACTTCAACAC 60 87048880 87048899 TGCATGTCTTCTTTGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060522.1 ENSRNOG00000036459 ENSRNOT00000054569 2 1 1 60 4 77479084 77479102 GATGTGGTCAGCTTCAAGG 59 77479042 77479062 AGTCAACAATTCCTAGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054741 ENSRNOT00000089782 2 1 1 60 4 102139412 102139431 TGTGTTAGTAGGTGGCAGAG 59 102139371 102139392 GTTCATAGGACAAACCATTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053568 ENSRNOT00000089129 1 1 1 60 4 120350159 120350177 CCCTTTCCTCCAGGATGTC 60 120350199 120350219 ATCCTTGACCAAAGAACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 3 1 1 60 9 52937878 52937897 TTTGATTTGCTTCAGTGCGT 59 52937918 52937938 GATCATCTCAATCGCCAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.1 ENSRNOG00000049032 ENSRNOT00000073020 2 1 1 109 10 35146956 35146976 TATGAGCTGTGGCTTCCTC 59 35146863 35146881 GCAATGACACCAAGAAGCA 59 Novel Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 3 1 1 60 15 43543654 43543673 AAAGCCCAGTTTAACACCC 58 43543696 43543715 ACAAAGGAGTCAGTCTTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056456 ENSRNOT00000085749 1 1 1 66 12 692835 692855 TGAAGTTGGAAGGATACAGAG 57 692883 692901 CTTCAGGAATTTGGGTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032045.1 ENSRNOG00000061132 ENSRNOT00000083407 2 1 1 81 18 44058041 44141685 GCCAACCCTGAAGATACAG 58 44057978 44057997 TTTCTCTGCAGAATTCTCGA 57 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000059571 ENSRNOT00000078656 1 1 1 60 4 171047878 171047898 TGCACACTATTAAAGCTCAGG 59 171047838 171047857 TCTGACATGCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072711.1 ENSRNOG00000051964 ENSRNOT00000080235 2 1 1 80 2 235092802 235092823 AAGCTGTCTGTGATTGAAATGG 60 235088357 235092762 GAATGGGTGACCTACATCGT 60 Novel Rattus norvegicus 81 AABR07013147.1 ENSRNOG00000053852 ENSRNOT00000077434 1 1 1 61 2 224712888 224712906 GATGTTGCTTCTGTCTCCT 57 224712930 224712949 GAAGACTGATGTTCATGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072558.1 ENSRNOG00000052378 ENSRNOT00000079561 1 1 1 86 17 45070827 45070845 TTCTCAACCTGTGGATCCC 59 45070893 45070915 AGTGGAATGGTTAGGACTCAC 60 Novel Rattus norvegicus 81 AABR07072558.1 ENSRNOG00000052378 ENSRNOT00000079561 2 1 1 87 17 45070826 45070845 ATTCTCAACCTGTGGATCCC 60 45070893 45070915 AGTGGAATGGTTAGGACTCAC 60 Novel Rattus norvegicus 81 AABR07064061.1 ENSRNOG00000045967 ENSRNOT00000072431 1 1 1 60 6 62797542 62797562 AAGGTGGTAGAGGACATTGAG 59 62797502 62797521 CATCCTGTTTAAGCCAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139873.2 ENSRNOG00000053098 ENSRNOT00000078792 1 1 1 80 3 73743768 73743791 CATCATCTATCTGATCACTGTGG 59 73743710 73743730 TACATGGGTGTTTGTAACCTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056514 ENSRNOT00000077534 1 1 1 62 17 9247727 9247746 TGTGTCAGTAGGTGGTAGAG 58 9247684 9247708 CATTCAGATGAATAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058514 ENSRNOT00000082646 2 1 1 60 17 60418370 60418388 CTTTCTCCCTCACCACTCC 59 60418328 60418347 GGAAGTAAGTCCTCTTCGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059221 ENSRNOT00000083903 1 1 1 60 2 167059682 167059701 CCTAAAGGGATTGCAAAGGT 58 167059641 167059661 CTCTTCTCTGCTACCTATGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041877 ENSRNOT00000063630 3 1 1 67 X 10380740 10380759 TATCACACTGAACATGCCCA 60 10380789 10380807 GTACTTAGCTAGGCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059156 ENSRNOT00000084342 2 1 1 60 17 73492696 73492714 GCTGTCGCACATGTATGTC 59 73492654 73492672 CACTGAGTGGTGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.2 ENSRNOG00000048974 ENSRNOT00000071198 1 1 1 60 2 231874977 231874996 CCCTTCCACTTTAACATGGG 59 231875018 231875037 AAACATGGCAGCACTTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041942 ENSRNOT00000063695 1 1 1 60 X 136888056 136888076 TGCCTGATACTGTCTTAGCTC 59 136888095 136888116 AATACGACATACTTGCAATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004756.1 ENSRNOG00000058731 ENSRNOT00000080976 1 1 1 60 1 154627185 154627205 ATCAAGTGTAGAAAGCGTGTG 59 154627227 154627245 AGGAAAGCATGGAGTGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051833 ENSRNOT00000080178 2 1 1 60 17 48581627 48581647 ATGTGACAGAGTGGAAAGAGG 60 48581587 48581606 TTCACATGGTCATAGGCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000060358 ENSRNOT00000090349 3 1 1 80 X 11866188 11866206 GGTAGTGTGCTAAACGAGC 59 11866126 11866146 GCAAAGGTTACTATCAAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970,ENSRNOT00000078786 2 2 4 89 19 17397468 17399493 ATATAGAGGATGACGTTTCTTCCC 60 17396113 17396132 TAGGCCAGTACACTTTGTCC 60 Novel Rattus norvegicus 81 AABR07027878.1 ENSRNOG00000052387 ENSRNOT00000091880 1 1 1 81 17 48001073 48001091 GTCTTTCCATCTGCACCAC 59 48001007 48001030 CTGAGCTTTGTAAGAGTGGTC 59 Novel Rattus norvegicus 81 AABR07057644.1 ENSRNOG00000055655 ENSRNOT00000084233 3 1 1 67 7 82284581 82284602 GGAGCATCTATGGAAGTAACCA 60 82284535 82284553 ATCAGAGAAGACTGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056202 ENSRNOT00000085687 1 1 1 81 10 83735590 83735608 ACTGTCTACATGCTGGCTC 60 83735653 83735671 AACCTGGTCCCTCATTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061722 ENSRNOT00000082292 1 1 1 60 4 175979701 175979721 CTTTCTCCCTCACTACTTCAG 58 175979661 175979679 GACCTCATCAACTGAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061871.1 ENSRNOG00000030647 ENSRNOT00000052259 1 1 1 60 4 150199655 150199677 CTCAGATGAATGATGGATCTCAG 59 150199696 150199715 ATTTCTGAATCATCCGACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 1 1 1 60 4 69970941 69970961 CAAGAAGTTAGACCACAGGGA 60 69970899 69970917 TTTGTTTAGCTCTGAGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060890 ENSRNOT00000081694 3 1 1 60 14 45812512 45812532 CACATGAGCATTAGTAGGTGG 59 45812472 45812492 GTCAGAACAGCCTCTATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030901.1 ENSRNOG00000055889 ENSRNOT00000084845 3 1 1 85 10 108391505 108392397 CCCTCAAACGGAAGAACCT 60 108392445 108392464 CACGTATTTCCCATCAACGG 59 Novel Rattus norvegicus 81 AABR07029842.1 ENSRNOG00000050824 ENSRNOT00000070824 2 1 1 60 10 54769672 54769693 ACTCATGTAGATCCAGTTCCAC 60 54769714 54769732 CCCTTACTGAAGAGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 2 2 2 80 4 7150806 7150824 GATGTTCAAAGTGCTGCCA 59 7150866 7151220 CGGCTCTTCCAAATACTTGTG 60 Novel Rattus norvegicus 81 AABR07004022.1 ENSRNOG00000045763 ENSRNOT00000071788 2 1 1 60 1 122662199 122662217 CAGCTCTAAGCTGGATCCA 59 122662157 122662177 CTTCTCTATTGAGCAGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076282 2 1 2 90 4 32371500 32371518 CTCACTTAGGTCCAAGCTG 58 32336617 32336635 TTTCCCTCTGGTTCTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043248.1 ENSRNOG00000053919 ENSRNOT00000071451 3 1 1 81 19 26769572 26771482 AGCTCAACAACGTAATGAAGTC 59 26771521 26771542 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 AABR07040782.1 ENSRNOG00000011067 ENSRNOT00000014702 1 1 1 99 X 110178221 110178242 TTACCTTCAGAATTACAGGGAG 57 110178142 110178161 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052508.1 ENSRNOG00000061770 ENSRNOT00000088345 1 1 1 82 3 58380175 58380199 CAGATCTCATAGAATGATCACAGTC 59 58380239 58380258 GACCTGGGATTCTGGACAC 60 Novel Rattus norvegicus 81 AABR07004992.1 ENSRNOG00000052236 ENSRNOT00000086302 2 1 1 140 1 173284395 173284413 ACTCTTCCAAGGACATGGG 59 173284527 173284546 TTATCCTGTAGTTGCCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000051966 ENSRNOT00000088761 2 1 1 73 12 46862484 46862502 AATGAGGTTTATCCGAGGC 57 46862429 46862447 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061566 ENSRNOT00000086649 2 1 1 60 14 26311811 26311834 CCACTAGAGGATTACACATATGAC 58 26311852 26311871 CTACTCTTTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058528 ENSRNOT00000078480 2 1 1 60 1 115490140 115490163 CTGTGTCACATGAATATCACTAGG 59 115490103 115490124 ATACTGAATGTAGACATAGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014301.1 ENSRNOG00000047391 ENSRNOT00000071282 2 1 1 60 14 8065784 8065805 AAAGCTTCTGGATAGAATCCTC 58 8065745 8065763 GAGAGTGCCTGTCTTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063290.1 ENSRNOG00000048177 ENSRNOT00000071311 2 1 1 113 6 27210113 27210134 GTGGCCTTAATGATGAAGGG 59 27210210 27210228 AGCAGAGATCTATGCACGG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000054629 ENSRNOT00000077811 1 1 1 60 10 46193743 46193761 CTGACCTCTACGGTTTCCC 60 46193701 46193724 CCTCAACTACTACAAACTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC093965.2 ENSRNOG00000056321 ENSRNOT00000089960 3 1 1 80 10 40373860 40373883 CAAGCTTCTTCAAGAGATTTCC 58 40373801 40373819 CTCCCATCCTCCATATGGG 59 Novel Rattus norvegicus 81 Rn60_7_1407.3 ENSRNOG00000053143 ENSRNOT00000087227 3 1 1 80 7 142887900 142887920 GTAGGAACATCGTTTCTTGGC 60 142887961 142890216 GAGTCCTGGGATATCTGCTG 60 Novel Rattus norvegicus 81 AABR07008440.1 ENSRNOG00000055126 ENSRNOT00000083965 1 1 1 60 2 58647445 58647465 GAAATGCCTCTATGAGATCCA 57 58647405 58647429 CCTTCCTCCTTAATCACTAATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035171 ENSRNOT00000053294 3 1 1 60 10 43188378 43188396 TTGGAAGTTAAGCAGGGTC 57 43188419 43188438 GATATTCCCTGGCAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055733 ENSRNOT00000081390 3 1 1 60 17 88088175 88088193 ACTGGTCTTCAGCCAAGAG 59 88088133 88088153 TATAGACTAGGGAGGTGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103129.2 ENSRNOG00000053541 ENSRNOT00000081766 2 1 1 80 7 140137635 140139420 ACTGCCTTACCCATATCTGTC 59 140137575 140137595 TGTTACAGGGTACCTCTTCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054110 ENSRNOT00000090821 3 1 1 60 17 82189672 82189692 GGTTGAAGAAGATGATGTTCC 57 82189711 82189732 TCATAAACCCTTGACCAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053461 ENSRNOT00000091604 1 1 1 60 12 44052251 44052271 GCGATACAGAAGAGATTAGCA 58 44052292 44052311 AACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057704 ENSRNOT00000086024 3 1 1 62 2 227587045 227587069 CTGACAACAGACATATAGTTAAGGC 60 227587007 227587027 AAACCACAGTGGTTAGATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035114 ENSRNOT00000053237 1 1 1 61 12 24523097 24523115 CTAAGCAGGGTCGGATCTG 60 24523140 24523158 AAGCACCTGGTATTCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000052086 ENSRNOT00000077866 1 1 1 60 3 129328815 129328833 GAGGACCAAGAAGGCTGAG 60 129328773 129328794 TTGTCTAGGAGGAGTGTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000053824 ENSRNOT00000087965 2 1 1 60 17 15400574 15400592 CCAGTACAGTTCTCCAGTG 57 15400532 15400552 CTCCCATGCATAAATCAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054088 ENSRNOT00000088488 1 1 1 60 2 14966584 14966603 AGGGCTCCATATTTGAACAG 58 14966543 14966561 TCAGTGATACATCTGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111647.1 ENSRNOG00000039863 ENSRNOT00000061202 1 1 1 60 4 25617038 25617059 CACAGCAGACATAGATCTTCAG 59 25616999 25617019 CTTGAGGTCTATCAGTGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.2 ENSRNOG00000051080 ENSRNOT00000076463 2 1 1 60 X 68187632 68187652 ATAGAGGACACATGACTGGAG 59 68187592 68187613 CCATATTTGTAAGGAACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052749 ENSRNOT00000090106 1 1 1 60 2 251829094 251829115 CAGATCGTATAAATCTTTCGCC 58 251829055 251829074 ACTCAGAATTGTTCCTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 2 1 1 61 2 78283229 78283249 TTGATGTGAAATGGCAGTCAC 60 78283135 78283206 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059173 ENSRNOT00000083106 2 1 1 61 1 186497711 186497731 AGGCTATGTCTAAACTCAGTG 57 186497670 186497693 GGTGTTAGGCTACTAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051994 ENSRNOT00000089864 2 1 1 67 1 228262109 228262127 AATGAGGTTTATCCGAGGC 57 228262155 228262176 CCTGATATGGAATTTGCTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053871 ENSRNOT00000089811 2 1 1 60 1 261936143 261936161 CATTGAGGTACCACTGCTG 58 261936101 261936121 CGTAGTTATAGCCTGTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060672 ENSRNOT00000081361 2 1 1 60 14 113503212 113503231 TGCCATGTTACATGTACGTC 58 113503171 113503189 ACTGAGCATAGCCATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058031 ENSRNOT00000081602 2 1 1 60 1 173139677 173139696 TATACGAGTAGCTGCACTCC 59 173139719 173139737 GTTGCCTGCTTCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061190 ENSRNOT00000088325 3 1 1 66 2 202894245 202894264 GTCAGGTGGAAGAAGGAGAG 60 202894198 202894216 ATCATTCGCGTGTTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 2 1 1 66 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814015 165814033 CTACATCACTGTGAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911249 ENSRNOG00000056251 ENSRNOT00000080740 3 1 1 128 1 85253257 85253376 CAGACCTGTACAGAGCCTC 59 85253551 85253569 GGTGACATAGGCCTTCAGG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044605 ENSRNOT00000069872 2 1 1 60 1 161836652 161836672 ACAGCATGATATACCATCCTG 58 161836612 161836631 ACCCTTCTTAGTTCTGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052895.2 ENSRNOG00000053165 ENSRNOT00000082492 2 1 1 99 3 82374444 82374463 AACCATAGCATTCTGACCTC 57 82374528 82374546 AATCACTGCTGCTAGAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000034513 ENSRNOT00000052636 2 1 1 60 14 59994533 59994553 TACCAGATCTCATTTGACCTC 57 59994573 59994593 CTATGAGAGTACTAACCAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028381.1 ENSRNOG00000055638 ENSRNOT00000080328 2 1 1 80 17 67207919 67207938 CTACAAGTGTCCTGTGAAGC 59 67207984 67208002 TACCAACTCCTTCATGCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004397.1 ENSRNOG00000030679 ENSRNOT00000048584 3 1 1 60 1 141214506 141214528 CCGGAAGTGGTATTATAATGCAG 60 141214547 141214566 TGTGTCATCTCGCATTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054743 ENSRNOT00000079198 2 1 1 60 1 116711091 116711112 GACAACAGAAAGTCAAGAACAG 58 116711052 116711071 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 1 1 1 60 2 84566329 84566349 CCTTCTTAACACGAAAGACAG 57 84566368 84566389 GATAGCAGTTAGATGGTGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.3 ENSRNOG00000059963 ENSRNOT00000083564 3 1 1 80 8 69506163 69506189 ATGAGAAGGTCAAACCTTAGGA 59 69506104 69506125 GTTGAAGATATTTACTGGCCCT 58 Novel Rattus norvegicus 81 AABR07056767.1 ENSRNOG00000058819 ENSRNOT00000088769 3 1 1 80 7 40405588 40405611 AGATTTCACCTCACATGCGA 60 40405652 40405672 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07061860.1 ENSRNOG00000043615 ENSRNOT00000068882 2 1 1 60 4 149826579 149826598 GCCTTGTTGAAGGAAGTGTG 60 149826620 149826639 CTGGCTTGAACATCTGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 3 1 1 60 4 183450207 183450226 AGTCTTGATTCACTGGTGGG 60 183450248 183450267 ATATGTTTCTGGTCTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051379 ENSRNOT00000085090 2 1 1 60 1 24333821 24333843 GGAACGATACAGAGAAGATTAGC 59 24333783 24333801 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128960.2 ENSRNOG00000057958 ENSRNOT00000085104 1 1 1 141 17 78911821 78911839 ATTGTGGGAGTCACACTCC 59 78911944 78911999 AATCCACTGAAGGTCGAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 1 1 1 60 1 84797417 84797436 TATACGAGTAGCTGTGCTCC 59 84797376 84797394 GACAAATGGACCCTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 2 1 1 60 10 104714041 104714060 AAGACTCTGCCGATACACTC 59 104714000 104714018 TTCTCAGTAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001037.1 ENSRNOG00000047117 ENSRNOT00000073945 2 1 1 80 1 35152080 35152103 GAGATTTCACCTCACATGCG 59 35152019 35152037 TCCTCCTTCTCCACATCCT 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000055831 ENSRNOT00000088005 2 1 1 60 1 110521695 110521714 ATAGCTGTTGGTTTCAAGCA 58 110521734 110521755 GAATAGCCAACAAACTACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000058995 ENSRNOT00000082932 3 1 1 60 2 2478790 2478810 TACCTAGGTTTCCTTGTACCT 58 2478750 2478768 GCTATTGGCTGCTGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 1 1 1 66 19 37021308 37021486 TTTCAGCTAGCAATGGCAC 59 37021260 37021281 GAGTCTTTATAAGCCAAATGGG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000051593 ENSRNOT00000085190 2 1 1 80 1 116994490 116994509 GGGTCTATGTCGATGATAGC 58 116994429 116994450 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 1 1 1 60 Y 705581 705602 CACTATCATATACGGACAGGAC 58 705542 705560 TTTCTGGTTCTTGGAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056211 ENSRNOT00000089802 1 1 1 60 3 84387618 84387639 ATACACAGAAGATTAGCATGGC 59 84387658 84387678 GGAATACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053637 ENSRNOT00000089785 2 1 1 60 12 12727304 12727324 TAAACCTACCCTGTGTACACC 59 12727344 12727364 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059557 ENSRNOT00000086555 3 1 1 60 5 68338909 68338929 TAAGTTGCAGAGATGGGAGAG 59 68338869 68338890 ACTGATCACTCAGATCAGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060873 ENSRNOT00000083377 1 1 1 60 12 37657025 37657045 CAAACAAGCTCTCAAGAAGTC 58 37657064 37657085 TCTAGTCAAGAAGTCATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057697 ENSRNOT00000080861 1 1 1 62 1 214170108 214170129 GCAGCACATACACTAAATTTGG 59 214170067 214170085 AATCCTTGTGCAAGGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035267.1 ENSRNOG00000046209 ENSRNOT00000070896 2 1 1 60 12 9001190 9001209 CTGAACTCAGAGATTTGCCT 58 9001231 9001250 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057890 ENSRNOT00000087419 2 1 1 79 1 27723225 27723243 AATGAGGTTTATCCGAGGC 57 27723285 27723304 TGATTATTGTCCAAGGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060056 ENSRNOT00000085392 3 1 1 60 1 43982706 43982725 ATGGCACAGAGAAGATTAGC 58 43982748 43982766 ACGCTTCACAAATTTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059991 ENSRNOT00000078217 1 1 1 60 5 2951276 2951295 GCTCTTAGAAACATTGCAGG 57 2951235 2951254 TTTCTGCTACCAACTGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054464 ENSRNOT00000081664 3 1 1 63 5 52582801 52582820 CAGAGAAATTAGCATGGCCC 59 52582846 52582864 GCAGCTAATGTCCTGTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053569 ENSRNOT00000079288 1 1 1 60 10 47586477 47586495 AGAGACTTTGACAGCCCAG 59 47586517 47586537 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 1 1 1 76 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655594 10655612 TTCTCTGGGAACTCACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057115 ENSRNOT00000087409 3 1 1 60 1 88820826 88820844 ACTGAGTGCAGTATCAGCT 58 88820784 88820802 TATTGTCCTCGGACAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055478 ENSRNOT00000086437 1 1 1 60 2 169249233 169249252 ATCAGTCTTTGGTCAAGGGT 59 169249192 169249214 CTTGTTTAGAAGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060968 ENSRNOT00000077699 3 1 1 60 2 244824698 244824720 GATACAGAGAAGATTAGCATGGC 59 244824740 244824758 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0849.2 ENSRNOG00000051254 ENSRNOT00000076116 3 1 1 80 13 79913060 79913079 ACTGAATACTTGGATGGACG 57 79913121 79934302 TTTGGTCCAGATGTATCCAG 57 Novel Rattus norvegicus 81 ENSRNOG00000058420 ENSRNOT00000091110 2 1 1 80 1 214748143 214748164 TGTTCACATCCTCATCTACCAG 60 214748203 214748227 CCAAAGGGTATAATTGACCTGAC 59 Novel Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 1 1 1 64 18 76737342 76737360 AGCTCTATGACCCATGCAC 60 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055556 ENSRNOT00000085949 2 1 1 64 2 142743360 142743379 TATGTCAGTAGGTGGCAGAG 59 142743404 142743424 GCTCTCCTACTATCATGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000053665 ENSRNOT00000079107 2 1 1 60 12 39008101 39008119 AGAGAAGGAAACCAAGGGC 60 39008142 39008161 AATCCTGTGGAGAACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059397 ENSRNOT00000089397 1 1 1 64 3 20467477 20467497 CAGCACGTGTACTTAAATTGG 58 20467433 20467452 TGTGTCATCCTTGAGTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128476.2 ENSRNOG00000057782 ENSRNOT00000080865 1 1 1 60 7 121135654 121135674 GTATCAAGTCCTTCCTGTCCT 59 121135695 121135714 CACCTGTCCTTACTTCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058966 ENSRNOT00000089090 3 1 1 60 2 211233231 211233249 AGCATCCTCCTTTGGAGTG 59 211233268 211233291 ACTCTATTTCTCTTAGAGCAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109096.1 ENSRNOG00000046560 ENSRNOT00000071617 1 1 1 117 1 220836244 220836262 CTGCTTCCTGGACTCAGAG 60 220836145 220836163 TAGCTTCTGCCAACAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 1 1 1 60 8 42786943 42786964 CTTCTGTTCCTGAGCATCG 58 42786988 42787006 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_18_0774.1 ENSRNOG00000061786 ENSRNOT00000088260 2 1 1 81 18 78277511 78280863 CAGGGTATGGGCAAATTGG 59 78280907 78280926 CTCTCAGTAAAGGCCTGGAG 60 Novel Rattus norvegicus 81 AABR07011697.1 ENSRNOG00000054429 ENSRNOT00000078007 1 1 1 98 2 166319733 166319753 CATGGAGTCTCAGGGTGTG 60 166319653 166319673 ACCTTCCAGTCGGATAATCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000053557 ENSRNOT00000090085 2 1 1 60 10 72147988 72148008 AAGATGACTATCCGTCCTCAC 59 72148029 72148048 TTTGGATGAAACAGTGGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068285.2 ENSRNOG00000061524 ENSRNOT00000086903 3 1 1 93 9 95786919 95786942 AAGATCAAACTGACCGGCA 60 95786844 95786863 GCTGATAGGACTTCACAACG 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 2 1 1 60 5 6800273 6800292 GTCGTACTGTAGCTGTTGGT 60 6800314 6800333 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004947.1 ENSRNOG00000059184 ENSRNOT00000088291 1 1 1 80 1 171485358 171486064 TGTGGAAAGAGGATCATGAG 57 171486108 171486126 TTCTCAACAGCAAAGAGGG 58 Novel Rattus norvegicus 81 Rn60_13_0847.2 ENSRNOG00000051248 ENSRNOT00000076861 2 1 1 82 13 79736654 79737032 CTCTGAATGGCTAATTGTAGCC 59 79737069 79737093 CTGATTCAGTCTAATTGGTGAAGTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000057237 ENSRNOT00000089773 1 1 1 60 2 137252557 137252576 TACTGACCCTGAGATTTCCA 58 137252516 137252538 ACCCTACTACCACAAACTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053777 ENSRNOT00000080526 3 1 1 63 2 71792443 71792461 CATAGAGGTGTCCCAGGTG 59 71792487 71792506 CATAGCCTACTCTCACTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108631.2 ENSRNOG00000055424 ENSRNOT00000082046 1 1 1 60 1 228450852 228450872 GATGTTCAACCATCAAAGCAG 58 228450812 228450830 TTTCGGTGTGACACTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058479.1 ENSRNOG00000047414 ENSRNOT00000071132 1 1 1 68 7 118911586 118911604 GACAGCAGGAGTCAGTCTG 60 118911640 118911658 ACACTAGTCACAGTCGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029192.1 ENSRNOG00000061166 ENSRNOT00000081865 1 1 1 80 10 12284300 12284323 TAAGCTCTGTGTCCTTATTGTG 58 12284241 12284259 AGTTGAGTCATCAGCAGTG 58 Novel Rattus norvegicus 81 AABR07058102.1 ENSRNOG00000059201 ENSRNOT00000079389 1 1 1 81 7 100330761 100330783 TCACCTCACACCAGAATGG 59 100330698 100330717 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000060664 ENSRNOT00000080742 3 1 1 60 5 128079483 128079502 AAAGGCATGAAAGACAGGTG 59 128079522 128079543 TGTACAGTGAGTTGTTAGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD89 ENSRNOG00000055019 ENSRNOT00000085682 2 1 1 61 9 46283326 46283344 TCAACAGTTTGCTCTCCGT 60 46283283 46283301 AGACAGTGACTCGCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD89 ENSRNOG00000055019 ENSRNOT00000085682 3 1 1 62 9 46283327 46283345 ATCAACAGTTTGCTCTCCG 58 46283283 46283301 AGACAGTGACTCGCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057698 ENSRNOT00000080280 3 1 1 62 5 152601544 152601562 ATCATTCCTGGGTCAGGAG 59 152601588 152601606 CAAGTTCTCCGGAAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000052644 ENSRNOT00000085529 3 1 1 60 1 36350988 36351009 TCTTGTTATTGGCAAAGCTGTC 60 36350949 36350970 TTACTTGCTCAAGTCAGAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000060200 ENSRNOT00000080019 3 1 1 66 1 194979943 194979963 TCTCAGTCAAACATTCCTTGG 58 194979897 194979915 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048308.1 ENSRNOG00000031590 ENSRNOT00000008002 1 1 1 95 5 71867619 71867637 GACAACTTTGGCATCGTGG 60 71867540 71867560 ATCACGCCACAGCTTAGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052937 ENSRNOT00000081298 1 1 1 60 1 241451146 241451166 CTGCTGTGTCACATGTATCAG 59 241451188 241451206 GTCATCTTGGGTCATGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056113 ENSRNOT00000080970 3 1 1 60 1 69630392 69630412 TGATTCGGTTAATGTGACTGG 59 69630431 69630452 GGAGAAATATGGAACAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044128 ENSRNOT00000069395 2 1 1 63 20 46580488 46580506 CTCAGCAGCTAAGCAAGAC 59 46580533 46580551 CAGTTCCCAACGTCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD127 ENSRNOG00000055941 ENSRNOT00000080348 3 1 1 69 6 86805578 86805599 GCAACTGTGATGAAAGATTTGG 59 86805628 86805647 TTAGAGGGACTGTTGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017104.1 ENSRNOG00000058491 ENSRNOT00000075684 2 1 1 108 15 11091311 11091332 ACAGATAGAGGCCTTATATCCA 58 11091399 11091421 CTGTGAATTCGTTTAGCTCTG 57 Novel Rattus norvegicus 81 AC129054.1 ENSRNOG00000048460 ENSRNOT00000073887 2 1 1 91 10 12565030 12565049 AACATTGTGGAGCATGTGTC 59 12562659 12564976 ATTGAGCTACCTGAGGACC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058224 ENSRNOT00000085804 2 1 1 60 1 72213440 72213458 GTGGGCAGATGTATCACTC 58 72213479 72213500 CTGAACAAATGGAGTGATCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000077057 3 1 3 100 2 208420019 208420037 ATCTTCGCAGACAATGCTG 59 208419687 208419705 GTGACACTTACCCTGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061568 ENSRNOT00000079065 1 1 1 60 6 8579241 8579259 GAGAAGATTAGCATGGCCC 58 8579199 8579217 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056809 ENSRNOT00000083140 1 1 1 60 13 108532372 108532390 CTCAAACACAGGAGAAGCA 58 108532414 108532432 GGAATAGTATGAGCGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.3 ENSRNOG00000051485 ENSRNOT00000086722 3 1 1 60 15 30853228 30853249 GCACCTATCAGACTACTTACTC 58 30853267 30853288 TCACTGAGATATTGCACATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032255.1 ENSRNOG00000028381 ENSRNOT00000033768 2 1 1 69 18 56965395 56965414 CAATTCCCTTTGCGTGAGAG 60 56965340 56965358 TACAAGAAAGCCCACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017841.2 ENSRNOG00000060250 ENSRNOT00000082666 1 1 1 92 15 31769884 31770684 GATACCTCAGAGGAACAAGCA 60 31769502 31769526 GTTGTAAGAATCCTGACGAATAAGG 60 Novel Rattus norvegicus 81 AABR07001899.1 ENSRNOG00000058436 ENSRNOT00000089298 3 1 1 80 1 61504260 61506969 GTCTCTGTTGAGAACTACTGC 59 61507009 61507029 CTCATTACCCTGACAAGAGTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061517 ENSRNOT00000092070 1 1 1 78 3 94518646 94518664 CTTAGAGGCATTGCAGGTG 59 94518703 94518724 GAGCATAGACATATCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057525 ENSRNOT00000090274 3 1 1 62 14 58613207 58613227 GGAACGATACAGAGATTAGCA 57 58613251 58613269 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048770.1 ENSRNOG00000031344 ENSRNOT00000049192 1 1 1 60 5 90797114 90797134 ATTGAGCAGAGACAAAGACAG 58 90797074 90797094 GACATCTGAATGGCTCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058228 ENSRNOT00000083874 1 1 1 60 2 205880393 205880414 TGATGTGTCTGATCTAGTTGTC 58 205880354 205880372 GTATGTGGAGTGGTGAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068750.1 ENSRNOG00000056482 ENSRNOT00000091931 2 1 1 60 9 117484224 117484242 AAAGGCTGGAAGAACACCA 60 117484182 117484201 CTGTACCAGTTTCTGGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000060473 ENSRNOT00000087310 2 1 1 60 1 274674902 274674921 GTGATAGGAGCGGTTATACG 58 274674943 274674962 TCATCTCCGTGTACAATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059349 ENSRNOT00000086328 2 1 1 60 3 72157176 72157196 TACAGAGAAGATTAGCATGGC 58 72157136 72157157 CTTGAGTTCTTAGGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058901 ENSRNOT00000083478 1 1 1 60 13 39500413 39500431 TAGGTGGCAAAGAGGAGAG 58 39500371 39500394 GTCAGATGTTACAGATCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058901 ENSRNOT00000083478 2 1 1 60 13 39500394 39500412 GGGCTATGCCTATGATCAG 57 39500352 39500373 ATTGTTAGGCTACTGTTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057511 ENSRNOT00000082306 3 1 1 62 13 89311796 89311815 AAGGCTTATCCATTGCACTC 58 89311840 89311858 GAGTTTCCCGCATTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018058.1 ENSRNOG00000057750 ENSRNOT00000083365 1 1 1 60 15 37711048 37711071 CCATTGTGGAGAAGTTATCTAGTC 59 37711011 37711030 TGTGCCATGATACTATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 3 1 1 60 4 102514760 102514779 GTTACTGTCTGCATCTCTGG 58 102514801 102514820 AATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 3 1 1 60 7 31713762 31713784 GGAACTATCCAAAGATTAGCGTG 60 31713804 31713822 ACTGCTTCATGATTTGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Herc1 ENSRNOG00000051671 ENSRNOT00000089336 1 1 1 80 8 72178921 72178939 TTGGAGACGGAGACTATGG 58 72178980 72180137 CACAAAGGACATCAACTTTCTG 58 Novel Rattus norvegicus 81 AABR07020815.1 ENSRNOG00000058034 ENSRNOT00000078185 3 1 1 60 13 42220347 42220365 TCCGACACCTTCTTCTACC 58 42220388 42220407 GAGAAGACACGTTGTAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056270 ENSRNOT00000087440 3 1 1 60 3 134461518 134461538 AGCAATACAGAGAAGACTAGC 57 134461478 134461496 TGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059105 ENSRNOT00000085302 2 1 1 60 6 51659467 51659485 TGAGGTTTATCCGAGGCAC 60 51659425 51659444 AACATGGATGCAGAAAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054431 ENSRNOT00000090058 3 1 1 60 10 4544616 4544636 TTGTTGACTCCTGAGATTTCC 58 4544656 4544676 CTACCACCACAAAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 1 2 4 114 X 73466671 73467008 TCATGAAGGGTTTGATGGAC 58 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 AABR07064690.1 ENSRNOG00000060564 ENSRNOT00000092179 3 1 1 60 6 90683523 90683543 GGTCTGTGATGTGTATTTCCA 58 90683483 90683502 AGACATGGGTCTCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028970.2 ENSRNOG00000056130 ENSRNOT00000080445 3 1 1 100 10 1214858 1214877 TACCCACTCTGAACGAAAGG 60 1220434 1221007 CTTATTATATCCTGTGCTCACAGAC 59 Novel Rattus norvegicus 81 AC141344.2 ENSRNOG00000060478 ENSRNOT00000085003 2 1 1 60 5 154438151 154438174 CACTCAAGTTTATCAAGAAGAGGG 60 154438114 154438132 TCCTCCCTCTTTCTCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014983.3 ENSRNOG00000052897 ENSRNOT00000081849 3 1 1 149 14 42717912 42717931 GTCTCATATTTCACAGCGCT 59 42718043 42718066 TGTCGGGTATTTATTTCTCTGC 59 Novel Rattus norvegicus 81 AC133265.1 ENSRNOG00000059203 ENSRNOT00000084514 3 1 1 100 8 46694494 46694554 GCGTCTCCAGTCTTTATTCTC 59 46694414 46694434 TTGGTGATTTCCCATCTTTGG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000055461 ENSRNOT00000082980 2 1 1 60 3 176293421 176293439 CCAAGGTGCGATTATTGCT 59 176293379 176293398 CCGTTTCTCCTATGGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055104 ENSRNOT00000084472 1 1 1 60 3 142940802 142940821 GGATGTAACTGCTGTGTCAC 59 142940842 142940862 AAACATAGCCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051987 ENSRNOT00000087696 2 1 1 60 5 58591043 58591062 CGTGTTCCCAGAAGAAAGAC 59 58591002 58591022 GAACATAACCTTCTCCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057170 ENSRNOT00000082641 1 1 1 60 4 116823530 116823550 ATGTCACATGTGCATTATGGG 59 116823490 116823511 ACACATTGAGCATAGACAAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056256 ENSRNOT00000080659 1 1 1 60 10 89539677 89539696 GAGTTGGAATAGGAGCTTGC 59 89539719 89539737 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079511,ENSRNOT00000079547 3 2 2 80 4 113970086 113970104 ACAGATTGCGAATCCTGGA 59 113970148 113977540 TCTGCAACTCTGTGTCCTC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000060756 ENSRNOT00000078115 1 1 1 60 3 51030735 51030753 ATGAGGTTTATCCGAGGCG 60 51030693 51030711 GTGAGGGCCTAGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045463 ENSRNOT00000070730 3 1 1 60 10 76491593 76491616 CGTTTCAATCCTATCTGATCTCAG 59 76491556 76491575 CATCTAAGTAGCAGCCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 2 1 1 60 3 79151582 79151601 AGCCATTATTCAAGCTTGCC 59 79151539 79151559 CTGTTGGCCATCACAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056318 ENSRNOT00000083994 1 1 1 60 7 8737051 8737070 AGTTGTGACTGCTGTATCAC 58 8737087 8737111 CTGAATGTAGAAATAGCCTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052197 ENSRNOT00000085551 2 1 1 61 3 79566466 79566484 AGAGACTTTGACAGCCCAG 59 79566507 79566527 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053065 ENSRNOT00000084026 2 1 1 60 15 4539084 4539102 CCACAGCCAATTAAAGCAC 58 4539125 4539144 GCTCTCCACAGTCATTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043975 ENSRNOT00000069242 1 1 1 60 3 117069805 117069823 GGTCTATGCTGTCCTGGTG 60 117069847 117069865 CAAATCCTGCTCAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047693.1 ENSRNOG00000036481 ENSRNOT00000054589 2 1 1 60 5 43449226 43449246 ACCAATAGAGAAAGATGCACC 58 43449268 43449286 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052337 ENSRNOT00000088717 1 1 1 60 20 27309078 27309098 GTTGATCTGGTTGGCTATGTG 59 27309038 27309058 GAAGGCATGTATATGGAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059716 ENSRNOT00000085083 3 1 1 60 5 67219860 67219879 ACTGCTATGTCACATATGGG 57 67219819 67219839 TGAATGGAAACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061274 ENSRNOT00000077104 1 1 1 60 13 74169749 74169770 AAACTGGAACAATACAGAGCAG 59 74169710 74169728 CGAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD83 ENSRNOG00000061767 ENSRNOT00000088691 2 1 1 60 20 4817607 4817627 GATGTTTGCAATTGGGAAGTG 59 4817567 4817588 AAGGGTGATAGATAAGGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD83 ENSRNOG00000061767 ENSRNOT00000088691 3 1 1 60 20 4817607 4817626 ATGTTTGCAATTGGGAAGTG 58 4817566 4817586 CAAGGGTGATAGATAAGGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059873 ENSRNOT00000084428 3 1 1 60 19 21459617 21459637 AGCAGTACAGACAAGATTAGC 58 21459577 21459595 CACTTCACAAATGTGCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121465.1 ENSRNOG00000048692 ENSRNOT00000072375 1 1 1 60 19 37883897 37883916 GCCTCAAAGTCAGAAATCCA 58 37883939 37883957 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060231 ENSRNOT00000077180 3 1 1 60 10 60674306 60674328 GAGTACAGAGAAGATTAGCATGG 59 60674268 60674286 CGCTTCACGAATTATTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005533.1 ENSRNOG00000020477 ENSRNOT00000027758 3 1 1 60 1 185171630 185171650 TACAATGAAGTTGCAGTCTCC 58 185171671 185171690 CAGGCTCTTCAATCCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000053555 ENSRNOT00000090324 2 1 1 64 20 10281935 10281953 GGGCAACTTCCTTGTTCTG 59 10281980 10281999 TCAGTAATTTCCCTCAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.1 ENSRNOG00000058558 ENSRNOT00000085868 1 1 1 60 X 128298553 128298573 GCTTCTGGCTTAGTAGTTCTG 59 128298593 128298613 CTGGGAACTTGTTAGAATTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 2 1 1 60 X 8059532 8059553 AGGAAGATTTGCTCTTCTTTGC 60 8059493 8059512 CAAGGATCTAGCAGTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044850 ENSRNOT00000070117 2 1 1 60 5 28555448 28555468 TGCTAAGTAGGATGAGACCTG 59 28555408 28555428 AACTATAGCTTCACCTATGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000052741 ENSRNOT00000087314 2 1 1 83 10 85724722 85724740 TTGCTGATGACCCACTGAG 60 85724657 85724676 TAAACAACACAGCATGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051895 ENSRNOT00000079952 3 1 1 60 X 135846449 135846467 TTGGTCCAGGGTATACGAG 58 135846490 135846509 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000061509 ENSRNOT00000081675 2 1 1 60 19 12755596 12755615 GATGTGGCTTGTTTACATCC 57 12755555 12755575 CTGCTGAAGGAATCACTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054117 ENSRNOT00000088690 3 1 1 60 5 36591877 36591895 CTGCTATGTTGCATGAGCC 59 36591917 36591937 CACAGAGCAAATACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056732 ENSRNOT00000087228 2 1 1 60 18 62405895 62405914 TTTGTCTGCTCTAGATGACC 57 62405936 62405955 AGAAGATGCACAAGGAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 1 1 1 73 13 109990797 109990815 GTGTTTCACTCCAGACGTG 59 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054720 ENSRNOT00000078621 3 1 1 60 19 34524174 34524194 ATGTATTGGTACTTGGCAGAG 58 34524215 34524234 ATGTCCACAGGTCAGAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027744.1 ENSRNOG00000057345 ENSRNOT00000082713 2 1 1 60 17 43111009 43111033 GACTTAGGAGATAAGAAGGAAGGAG 60 43110973 43110997 CTGCTATCCTGTCAATAACTTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029741.1 ENSRNOG00000055994 ENSRNOT00000088207 1 1 1 60 10 48890809 48890828 ACAAACCCGATATGGTTGAG 58 48890848 48890869 GTTTCTGTCTTCTTCAACTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018048.2 ENSRNOG00000059279 ENSRNOT00000085358 2 1 1 80 15 37276453 37276471 ACAGGATCTTGGGACACAG 59 37268176 37268457 GTGAAGCAAAGGGATTCCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057386 ENSRNOT00000078924 3 1 1 63 5 170919691 170919709 ATTCAGCTGATCCGATTGG 58 170919736 170919754 AAGGACACATATGGAGCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000055379 ENSRNOT00000080333 2 1 1 60 4 34530328 34530351 GTACAATACTGAACTGACAGTGAG 59 34530291 34530312 ATTCATATGTAGGACAGCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 1 1 1 60 18 31515573 31515591 TCTTGGAAGCTAAGCAGGG 59 31515610 31515633 CTACATCCTACATACCTCCTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058914.1 ENSRNOG00000032026 ENSRNOT00000044982 2 1 1 79 7 142695728 142695746 CACTCTACAACTACCCGGC 60 142695665 142695683 AAACTTGTCAAAGGGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059046 ENSRNOT00000091775 1 1 1 60 15 17051126 17051147 ACAATACAGAGATTAGCATGGC 59 17051087 17051107 TGGAAGCTTCACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060256 ENSRNOT00000079484 1 1 1 60 1 61398193 61398212 TAGAATGGACTCCTGGTCAC 59 61398152 61398170 TTCTCCCAGTAGGAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.5 ENSRNOG00000057857 ENSRNOT00000078174 3 1 1 73 15 32012570 32012589 TTACTCCTAGGCCTTCACCT 60 32012762 32012780 ATTTGTTTGACCTGCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054027.1 ENSRNOG00000047995 ENSRNOT00000070910 1 1 1 60 3 137018721 137018739 CTGTGTAGCCCTAGCTGTC 60 137018763 137018781 CTCTGAGTTTAAGGCCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053440 ENSRNOT00000084604 3 1 1 60 X 96953046 96953069 ATGTTAGTAGGAGGTAGAGAAGAG 59 96953009 96953027 TCAGGACATCAGTGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096370.3 ENSRNOG00000060994 ENSRNOT00000088065 3 1 1 80 1 259685312 259685330 CCGAGAAGTGGGAATCCTG 60 259684841 259685271 CAGGGTCATAGAGTGACTTAGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000060313 ENSRNOT00000078449 1 1 1 60 7 98454795 98454818 GTCAAGAGTATATGAGTAGCTGAG 58 98454835 98454855 GATCTTGAGAGCTTGTTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060083 ENSRNOT00000091214 1 1 1 60 18 40063412 40063430 ATGAGTCAGTAGGTGGCAG 59 40063454 40063472 CTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055100 ENSRNOT00000087935 1 1 1 60 7 45339158 45339182 GTTCTTATATCAATCAGGGACAGAG 59 45339197 45339218 GTTACCAAGCTAGGATAAACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058823 ENSRNOT00000087885 2 1 1 60 18 20841850 20841868 CACATGTGCATTTGTCGGT 60 20841890 20841910 GTCAGAACACTCAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 2 1 1 61 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751002 65751020 GACTGCTTCCTAACGTCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 3 1 1 63 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751004 65751022 TGGACTGCTTCCTAACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000061195 ENSRNOT00000083166 1 1 1 60 X 123705909 123705928 AGAGCAGGTAGCAATTACAG 57 123705868 123705888 TTTCAGCAGGATTAATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 3 2 2 84 6 139865495 139911804 TTTGAAAGGTGTCCAGTGTG 59 139865430 139865448 ACAGGAGAGTTTCAGGGAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060957 ENSRNOT00000084449 1 1 1 60 5 27757686 27757704 GTCACGTCTGAGCAAAGTG 59 27757725 27757746 GTCAGATGTTCATAGGACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh5 ENSRNOG00000053850 ENSRNOT00000081756 2 1 1 81 7 3340896 3340915 TGCTGGATATCACTGATCCC 59 3340707 3340852 CCAAAGAGCCCAGTTTCTC 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058062 ENSRNOT00000090209 2 1 1 60 3 138472727 138472745 TTGGTTCAGAGCAACTTCC 58 138472768 138472787 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052989 ENSRNOT00000083014 3 1 1 61 18 27933515 27933533 GAGAAGATTAGCATGGCCC 58 27933472 27933491 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.3 ENSRNOG00000059130 ENSRNOT00000079416 1 1 1 112 1 198936726 198936744 AAATGAGGAGTGGGAGCTG 59 198936817 198936838 GGTAAAGTAGAAAGTGACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.3 ENSRNOG00000059130 ENSRNOT00000079416 2 1 1 113 1 198936726 198936744 AAATGAGGAGTGGGAGCTG 59 198936818 198936839 AGGTAAAGTAGAAAGTGACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052888 ENSRNOT00000078648 3 1 1 60 18 24205941 24205961 GTGTCAGTAGGTGACAAAGAG 58 24205901 24205919 TCCCTGGGTCAGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060834 ENSRNOT00000092219 2 1 1 60 18 16703864 16703884 AGCCACACTTTAGTTGAAGAC 59 16703903 16703924 GGCTTAGGAACAAACAGTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054178 ENSRNOT00000081350 3 1 1 71 3 70877749 70877769 TTTAGGTTTGGCTGCTTTGTC 60 70877797 70877820 CACTTAATGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058165 ENSRNOT00000088040 2 1 1 60 6 20467590 20467611 AGTCAGTTACAGATGGAAATCC 58 20467629 20467650 GTCAAATGGAGTAGTGAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053570 ENSRNOT00000078965 2 1 1 61 4 8204293 8204311 CTGTCACCTCACTGATGAC 58 8204331 8204354 GGGTACATTAGACTAAACATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135265.1 ENSRNOG00000042387 ENSRNOT00000046606 1 1 1 60 18 70960416 70960437 GCTTTAATGTGTCAGTACAGGA 59 70960456 70960476 TCATAGATACCGAAGTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057723 ENSRNOT00000089109 2 1 1 60 5 86556455 86556475 TTGAGTTCTGCTTCTAGAACC 58 86556415 86556436 ACACTATTAGGAAATGGTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060885 ENSRNOT00000081734 3 1 1 60 X 32924651 32924669 GACGAAGACAGAAGAGGTC 57 32924692 32924711 AGGTAGGAATGCCTTAACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054766 ENSRNOT00000088295 3 1 1 62 15 76116743 76116761 TCTGTCACATGTGGGTCAG 59 76116699 76116722 GGTCAGAACACTATAGTTATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058763 ENSRNOT00000083080 2 1 1 80 X 119811288 119811306 GCTCACTTCAGCAGTACAC 59 119811350 119811368 TAACATGTCATCCTTGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060702 ENSRNOT00000080765 1 1 1 60 7 118580802 118580825 TTGTCAGAGAAGGTACTATGATCG 60 118580765 118580783 ATCAGCACATCCGAAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.2 ENSRNOG00000057086 ENSRNOT00000087750 2 1 1 60 4 117757956 117757974 CCTAGTGTCTGGCTCTTGG 60 117757914 117757932 CAGGCAAAGGAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052060 ENSRNOT00000078488 1 1 1 60 5 70827949 70827967 CATTGTGCTTCCGTAGGTG 59 70827987 70828009 AGTAAGTGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.2 ENSRNOG00000036381 ENSRNOT00000017084 1 1 1 63 15 40522954 40522975 AAGAACAGTATCTCAGCTACAG 58 40522912 40522930 CTGGCTTCAAACACATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.2 ENSRNOG00000036381 ENSRNOT00000017084 2 1 1 64 15 40522954 40522975 AAGAACAGTATCTCAGCTACAG 58 40522911 40522929 CCTGGCTTCAAACACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055173 ENSRNOT00000089437 2 1 1 60 15 35649512 35649530 CCTGTCTTCAGTCAAGGGT 59 35649470 35649489 GCTTGTTTGGAGGTTCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 1 1 1 60 20 867054 867077 GAGAGGGTATGTCTACACTTAGTG 60 867017 867041 CAAGGCTACTAATTACTCAGAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132539.1 ENSRNOG00000052063 ENSRNOT00000079648 2 1 1 85 8 119261888 119261906 TTAGAGGAGGACTGTGAGC 58 119261955 119262138 CTGAAGAAGTGCTCCTCCA 59 Novel Rattus norvegicus 81 AABR07061039.1 ENSRNOG00000058405 ENSRNOT00000092130 3 1 1 81 4 103049573 103049970 TGGATTCCTGCTTCCAGAG 59 103049510 103049529 TAGAGACTTGACCTCCAAGG 58 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 3 1 1 61 15 109415296 109415314 AGAGACTTTGACAGCCCAG 59 109415337 109415357 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058090 ENSRNOT00000088128 3 1 1 62 11 68597920 68597941 ATATACCAGGATCAGGAAGGTG 59 68597964 68597982 CACATCCCATGTGCAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054443 ENSRNOT00000090503 3 1 1 60 20 36760102 36760122 TCTCCTAGAGGCATTGTAGGT 60 36760140 36760162 GAAGACAGAGAATAGACAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059168.2 ENSRNOG00000061080 ENSRNOT00000077289 2 1 1 80 4 6185556 6185576 CTGTTACTCCATTAAGGCGTG 59 6185616 6187357 TATCTTCTCCCGATTGTCTGC 60 Novel Rattus norvegicus 81 AABR07065589.1 ENSRNOG00000053429 ENSRNOT00000079092 1 1 1 60 6 135877821 135877839 ATCCAAGCCACTGAACCTC 60 135877779 135877797 TGTGGTCCGAGAATACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115273.1 ENSRNOG00000048185 ENSRNOT00000070965 2 1 1 68 19 56088735 56088753 CTTCTCTGTGTAGCCCTGG 60 56088785 56088803 GATCTCTGAGTCTGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061892 ENSRNOT00000081583 3 1 1 60 11 64748619 64748637 CTCCTCTGCTAGAACCTCC 59 64748661 64748679 ACGTCTGTCTTTCAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051781 ENSRNOT00000084234 1 1 1 60 19 39207210 39207231 GAAGGAATCAGGAAAGATTAGC 57 39207171 39207192 CTGCTTCATGAATTTCCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057820 ENSRNOT00000081557 3 1 1 75 19 27449899 27449920 CGCTTCAGAAGTACATATACGA 58 27449845 27449864 AATTTGCTGCTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033045.1 ENSRNOG00000000713 ENSRNOT00000000903 1 1 1 60 11 2786078 2786099 CTGCTGACGATAGTTGATACTC 59 2786039 2786060 GCCAGCAATTACTATTATCCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053980 ENSRNOT00000092010 3 1 1 60 11 3269666 3269685 GAACCAGCTCTTGAGAAGAC 58 3269704 3269726 GAAAGTACTCTTACCATTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055052 ENSRNOT00000083053 1 1 1 60 9 115765873 115765892 TAGGTAGGTGTTCTCCTCTC 57 115765915 115765933 GTAGCCCTCTTCAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 2 1 1 60 9 110547390 110547408 CTTTGAAGCCGTTCCACTC 59 110547348 110547366 CCCTGCTTAGCTTCTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000060362 ENSRNOT00000079960 1 1 1 60 18 30579169 30579187 AAAGGAAACCCTCCCTGTG 60 30579206 30579229 GATGTACTTCCTATGATGTACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058440 ENSRNOT00000084096 2 1 1 60 5 35285139 35285157 AAGGGTTTGTACAGAGTGC 58 35285181 35285199 GAGAACCCAATCTCAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057257 ENSRNOT00000082074 2 1 1 60 4 53658042 53658063 GATACTGTGAGCAGAGAAATGG 59 53658003 53658024 ACATCTCACATGCAATAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000031202 ENSRNOT00000078058 1 1 1 80 1 169494037 169494057 AAGCTCAGGATATGAAAGGCA 60 169493468 169493735 GTAGATTCATATGAACCCAGTATCG 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000052242 ENSRNOT00000080776 1 1 1 60 18 60869538 60869557 GCGTGGATTTGGATTTATGG 58 60869579 60869598 CTAGCATGGGACACTATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052911 ENSRNOT00000090282 2 1 1 60 18 62745434 62745453 TTTGGATTTATGGCAGGCTC 59 62745476 62745494 GTTTGCTCTAGCATGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034324.1 ENSRNOG00000050506 ENSRNOT00000075798 3 1 1 60 11 65309281 65309300 GCCTTGAACTCAGAGATCCA 60 65309240 65309258 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068360.1 ENSRNOG00000050471 ENSRNOT00000070987 1 1 1 82 9 101251575 101251593 TCTTCACATCATTGTGGCA 57 101251638 101251659 TGATCTGTTTGGTCTTTCCA 57 Novel Rattus norvegicus 81 SNORA51 ENSRNOG00000055249 ENSRNOT00000087721 1 1 1 60 4 114560985 114561006 AATAAACTACCCTGTGTACACC 58 114561027 114561045 GCATTCACGATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057617.1 ENSRNOG00000057824 ENSRNOT00000039430 2 1 1 60 7 80457486 80457504 CTGGTAACTTACGTGCCTG 58 80457444 80457463 TTCTCATCCACATTGACCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059076 ENSRNOT00000082832 2 1 1 60 11 56015595 56015614 GATCACCAGGGTTAGTTCAG 58 56015636 56015655 ATGAGTGAAGAAGGGAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049149.1 ENSRNOG00000024197 ENSRNOT00000029509 2 1 1 60 5 107608701 107608719 GAAGTTCTTGAATGGCGTG 57 107608659 107608680 ATTTCTTAGGCTTTGACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 2 1 1 60 5 91133001 91133019 GATGAAGAACGCAGCTAGC 59 91133041 91133061 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047799.1 ENSRNOG00000058066 ENSRNOT00000091281 1 1 1 61 5 48410507 48410525 GATGTCCAAGGTCAAGGTG 58 48410550 48410568 GAAAGACAGCAAGACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060993 ENSRNOT00000091180 1 1 1 60 7 6059061 6059080 CTACTAGTGTTGCAGGTGTG 58 6059102 6059121 CTCATCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 1 1 1 66 6 75606889 75606907 TTATCCATTGCACTCCGGA 59 75606841 75606859 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052936 ENSRNOT00000084898 2 1 1 67 11 19816812 19816830 CAGGACAGGTACAGCAGAG 60 19816861 19816879 TTGAGGCATATGGACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD71 ENSRNOG00000059926 ENSRNOT00000082476 3 1 1 60 19 41824890 41824908 TGAAGCAAGGAGTGATCCA 59 41824848 41824867 TCAGCAATGTGAGTTTCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061178.1 ENSRNOG00000054121 ENSRNOT00000085062 2 1 1 90 4 108701010 108701028 AACAAGACCTTGCAAACCG 59 108696741 108700956 TCCTTCAGCTCCTGTTGTC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000056630 ENSRNOT00000091504 1 1 1 60 11 69743443 69743461 GACTCGGCAGTTAAGAGTG 58 69743484 69743503 GATACTGAGAGCCAAACTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056630 ENSRNOT00000091504 2 1 1 60 11 69743451 69743470 AGTTAAGAGTGCTTGTTGCT 58 69743493 69743511 CCAGCATGGATACTGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053625 ENSRNOT00000088617 1 1 1 82 11 25084272 25084290 GCTTCAGCAGCACATATCC 59 25084336 25084354 ATGAACTCGCCTGTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044997 ENSRNOT00000070264 3 1 1 61 4 143489655 143489673 CACATGCCCATCTCATCTG 58 143489695 143489716 ATCAAAGTGTTACCTAGACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052655 ENSRNOT00000084876 1 1 1 60 4 101119523 101119544 TCTTGCTAATTGACAAGGAAGG 59 101119484 101119502 ACTGCTTTCATTGTGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009457.1 ENSRNOG00000046362 ENSRNOT00000071824 3 1 1 109 2 98613927 98613945 TCTTGAACTGGAGGATGCC 59 98613832 98613854 AAACCGGATAACCAGTTGC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061079 ENSRNOT00000091924 1 1 1 60 7 93146531 93146549 AGTAGGTGGCAGAGAAGAG 58 93146489 93146510 CTAATCCTTCAGGTCTGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055492 ENSRNOT00000090204 1 1 1 60 6 30232911 30232931 AAGACTGGTCTTCTGTCAAGG 60 30232953 30232971 TGGTTTGGAGCTCTGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064983.1 ENSRNOG00000004582 ENSRNOT00000006043 2 1 1 60 6 103640233 103640254 TTCAATGTTGGCATTCTACCTG 59 103640275 103640293 GTGCAGTGATGACCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.2 ENSRNOG00000058371 ENSRNOT00000091767 2 1 1 60 2 225025931 225025950 GCCTAACTTCTGATCCAGTC 58 225025890 225025910 AACTTGTTGAAGTCAGTCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064102.1 ENSRNOG00000024969 ENSRNOT00000039776 3 1 1 60 6 64649468 64649489 AGGAGGAAATACTAGACATTGG 57 64649508 64649528 AAACTCTCATGTCTTCTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063197.1 ENSRNOG00000051746 ENSRNOT00000087358 3 1 1 60 6 21709502 21709520 AGGATGTGTCTACTTGGGA 57 21709544 21709562 GAAAGATGGGCTGATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136847.1 ENSRNOG00000046430 ENSRNOT00000074835 3 1 1 60 11 71469345 71469363 TGTAGTCCTGGCTATCCTG 58 71469386 71469405 AATCTCTGAGTTCAAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043725.1 ENSRNOG00000055568 ENSRNOT00000086623 3 1 1 60 19 36390214 36390234 GCTGACGATAGTTGATACTCC 58 36390253 36390274 CTGCCAGCAATTACTATTATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076841,ENSRNOT00000085052,ENSRNOT00000088581 3 3 6 60 10 74882541 74882559 GCCTGTACTTCATCTCACC 58 74882902 74882922 GATTCCAAAGTGCTCGATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055628 ENSRNOT00000090915 2 1 1 60 9 15916206 15916225 AGAAGATTGCATGATCCCTG 58 15916248 15916266 TCAATATGGAACGCCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060092 ENSRNOT00000086170 1 1 1 72 9 107804416 107804435 TGATCTGGCTGTGAAATCTC 58 107804363 107804381 AATCCACCAAGTCAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055864.1 ENSRNOG00000046641 ENSRNOT00000074602 2 1 1 60 7 14155207 14155225 GCCTTGAACTCAGAGATCC 58 14155165 14155183 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044494 ENSRNOT00000069761 3 1 1 60 17 61415745 61415763 TGATCTCGGAAGTGAAGCA 59 61415703 61415721 TGGCCTTAGGAAGACTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054642 ENSRNOT00000078054 2 1 1 60 17 81859224 81859247 GGCTAAGATCAAGTGTAGTATGTG 59 81859266 81859284 CAGCTGCCAAATTCACCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060588.1 ENSRNOG00000027186 ENSRNOT00000035078 1 1 1 61 4 82432744 82432763 CATCTCTGCGTGAGTATCTC 58 82432702 82432720 CACAGAGGCCTCTTAGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033465.1 ENSRNOG00000055484 ENSRNOT00000084837 1 1 1 114 11 22852252 22852273 TATTACCTCAACCAGGGCG 59 22852347 22852369 GTCTTGAGTATTTGTCATCTGGG 59 Novel Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000077743 1 1 2 102 6 138536181 138536283 TCAAAGCTGTCTCCTGTCC 59 138536097 138536115 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061083 ENSRNOT00000077425 3 1 1 60 10 89558409 89558427 AGTTGGAATAGGAGCTTGC 58 89558450 89558469 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000733.1 ENSRNOG00000058047 ENSRNOT00000077927 2 1 1 80 1 24855730 24855751 AACTTAGAGATGGAGAACACTG 58 24855042 24855690 GAGCAGGTTTCTAGAGAAGG 57 Novel Rattus norvegicus 81 AABR07033540.1 ENSRNOG00000054029 ENSRNOT00000082485 2 1 1 80 11 26721286 26721307 AGACAGACAGATAGACCAATGG 59 26721223 26721247 CCTTTGTCAAACAAGTGACCA 59 Novel Rattus norvegicus 81 AABR07021558.1 ENSRNOG00000055673 ENSRNOT00000088425 1 1 1 80 13 78328725 78328744 GGGTTGTTTCTTGCTTTCAC 58 78328656 78328678 CGGGTTCATTTATCTCTTTGGT 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076600 2 1 3 121 20 44608169 44608187 TGGAGGAAGGTGTTCAGAG 59 44602974 44602992 CAAGACCTGTCAGGACCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC113635.2 ENSRNOG00000056335 ENSRNOT00000081214 2 1 1 60 2 209834772 209834790 GAAGACAAATTGGGCCAGG 59 209834812 209834833 TCAACTCTAGCTGCTTCTAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000050347 ENSRNOT00000073923 1 1 1 80 10 89335747 89337720 CAAGAAGGATATAAAGCCCGT 58 89335687 89335705 AGCTCCATCTCGTCATCTC 59 Novel Rattus norvegicus 81 AABR07067233.1 ENSRNOG00000059387 ENSRNOT00000081277 2 1 1 80 9 35925608 35925631 GAGATTTCACCTCACATGCG 59 35925673 35925692 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000061764 ENSRNOT00000082700 2 1 1 80 13 92669956 92669979 CTTCCCAGGAAATAGGTCCC 60 92670027 92670045 CCAGGAAAGTGGAGAGGAG 59 Novel Rattus norvegicus 81 AABR07015859.1 ENSRNOG00000058434 ENSRNOT00000078252 1 1 1 80 14 81713810 81717564 CTTACAGCAGACTCTGACC 57 81713748 81713768 AGTAGCTTCTGGTATTCAAGG 57 Novel Rattus norvegicus 81 AABR07038219.1 ENSRNOG00000052118 ENSRNOT00000084562 2 1 1 60 X 43293744 43293764 GCAACAACAGATTATGTCACC 58 43293783 43293804 CGAATATACAAAGGAACGAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 1 1 1 124 1 198576786 198577166 TTAAGCTGGTCCCAACTCC 59 198576680 198576698 ATCGTCATCGTATTCGGCA 59 Novel InUTR Rattus norvegicus 81 AABR07019895.1 ENSRNOG00000056798 ENSRNOT00000070835 2 1 1 60 13 6456361 6456381 TCCATCATGTTCTAGTCACAC 58 6456321 6456342 ACTAGCATCTCTACTTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045006 ENSRNOT00000070273 1 1 1 60 13 79439206 79439227 CTGAATGACCTGATCTAGTCTG 58 79439167 79439186 AAGTATTAACCAGGCCTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030603.2 ENSRNOG00000052459 ENSRNOT00000085552 1 1 1 71 10 95431204 95431223 GCATAAAGCTTGTCTCACCC 59 95431152 95431173 CATTCTCTTACTATACAGCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 1 1 1 66 7 380961 381671 TAAGTTCAGCTCCCAGAGG 58 381701 381719 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000055883 ENSRNOT00000089208 1 1 1 60 8 49201867 49201888 AAAGAAAGAAGTTAGCCTTCCC 59 49201907 49201927 TGTGTTAGTAAACTCAAGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097575.1 ENSRNOG00000046927 ENSRNOT00000074227 2 1 1 153 12 46915143 46915161 GCTCAGACACAAAGACACC 59 46915280 46915303 GATGCTGACGTGTTGAGAG 59 Novel Rattus norvegicus 81 Rn60_20_0049.10 ENSRNOG00000058987 ENSRNOT00000082491 3 1 1 91 20 4900273 4900791 CCATCTTCAACAGGTGCAC 59 4900200 4900218 ATCCAGGTTGAGTTCCCTC 59 Novel Rattus norvegicus 81 AABR07024757.1 ENSRNOG00000050966 ENSRNOT00000072221 3 1 1 80 16 14864549 14864572 AGATTTCACCTCACATGCGA 60 14864488 14864508 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060922 ENSRNOT00000078605 1 1 1 60 8 71593785 71593803 TGTGTCACATGTGCATCAG 59 71593743 71593763 AGAACAGAGTGTAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060922 ENSRNOT00000078605 3 1 1 60 8 71593785 71593804 CTGTGTCACATGTGCATCAG 60 71593744 71593764 GAACAGAGTGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060736 ENSRNOT00000083997 3 1 1 61 8 13778525 13778547 GGGAAATACTGTGATCATGAAGG 59 13778486 13778507 TCCAGAGCGTCATAGATAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041897 ENSRNOT00000063650 1 1 1 60 8 15461646 15461667 CATCTTGAATGTTACCCATCTC 57 15461607 15461627 CTTACTACTTCCAAACCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141517.1 ENSRNOG00000057297 ENSRNOT00000086156 1 1 1 80 1 72966512 72966534 AGATTTCACCTCACATGCG 58 72966450 72966469 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054754 ENSRNOT00000080293 3 1 1 60 8 126890708 126890726 GATGAAGAATGCAGCCAGC 60 126890749 126890768 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000056888 ENSRNOT00000086106 1 1 1 60 8 76903405 76903429 GTGATAAGAGTGGTTATACACATGG 60 76903445 76903465 CCATCTCCATGTATAATGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045047.1 ENSRNOG00000053110 ENSRNOT00000079499 2 1 1 60 20 32797863 32797884 GACATGACACATAGATGCACAC 60 32797824 32797842 TCTGCTAACCCTCTTCCTC 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07024722.1 ENSRNOG00000056897 ENSRNOT00000080161 1 1 1 80 16 12662102 12662120 TGCCTATGGCCATTTACTC 57 12661915 12662058 CTTCTCATCCAGGTCTGTG 57 Novel Rattus norvegicus 81 AABR07025051.2 ENSRNOG00000053090 ENSRNOT00000083479 2 1 1 78 16 26592242 26592260 ACTTCTTCCAGAACCCAGG 59 26592182 26592201 TCTAGGTCCTTCCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024825.1 ENSRNOG00000048427 ENSRNOT00000071397 1 1 1 60 16 18380520 18380539 GAACCTTGTTGCTGAAATCC 58 18380479 18380498 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044415 ENSRNOT00000069682 1 1 1 60 3 96060118 96060137 ACACAGTCTCAACAGATCTC 57 96060160 96060178 CACATCTAAGCACCAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056303 ENSRNOT00000079927 3 1 1 61 3 123381617 123381639 GATACAGAGAAGATTAGCATGGC 59 123381659 123381678 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024907.1 ENSRNOG00000051631 ENSRNOT00000091071 1 1 1 60 16 21768047 21768066 CATGTGCTATCGAAAGTGTG 57 21768006 21768025 TGGAGCTGTTAGTATAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014745.1 ENSRNOG00000060277 ENSRNOT00000089286 2 1 1 81 14 29645518 29650842 CAAGAAACGACAAGGTGGG 59 29645455 29645473 TGGGAAAGAGGATGTGCAG 60 Novel Rattus norvegicus 81 AABR07031168.1 ENSRNOG00000055612 ENSRNOT00000085903 2 1 1 81 18 3015966 3015986 CACTCGAGATTTCTGTTTCCC 59 2900539 3015923 TTTCCATTGCTCAGCAGTG 59 Novel Rattus norvegicus 81 AC125757.1 ENSRNOG00000058467 ENSRNOT00000087795 2 1 1 79 5 2888558 2888576 TTTGACCTTTCACCACAGC 59 2888307 2888325 ACAAGTGCTGCCAAATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062615.1 ENSRNOG00000061521 ENSRNOT00000078708 1 1 1 83 6 74185 75597 CCACTGCAGAGATGGTCTC 60 75638 75662 GTCACTAATCTGTTATCCTTCTTCC 59 Novel Rattus norvegicus 81 AABR07031393.1 ENSRNOG00000052995 ENSRNOT00000082044 2 1 1 80 18 12140922 12140940 GATTGGCCAACGAATGGAC 60 12140982 12141521 AAACTCAAGGAAGAAGTGCAG 59 Novel Rattus norvegicus 81 AABR07031402.1 ENSRNOG00000059577 ENSRNOT00000083984 2 1 1 105 18 12348296 12379462 TACACATGCTGAAGAGGTGG 60 12348210 12348229 ATTGTTACACAGCAGCACTG 59 Novel Rattus norvegicus 81 AABR07031404.1 ENSRNOG00000061117 ENSRNOT00000081412 3 1 1 102 18 12390174 12390193 TTTCCAGTCATGTGGAAGAG 58 12384195 12390110 TTGTTCTTAAGGTTCCCGTC 58 Novel Rattus norvegicus 81 AABR07062775.1 ENSRNOG00000054672 ENSRNOT00000084160 1 1 1 105 6 7395656 7416110 CTTCTCTTTGGGCTTGGGA 60 7395569 7395587 TTCTTGCTCCAGCTTCTCC 60 Novel Rattus norvegicus 81 AABR07015015.1 ENSRNOG00000056503 ENSRNOT00000085232 3 1 1 98 14 45395637 45396216 GCAAAGGAACAGAGGTCTC 58 45395557 45395575 ATGAGAGGGTGTAAATGCC 57 Novel Rattus norvegicus 81 AABR07047054.1 ENSRNOG00000054679 ENSRNOT00000081873 2 1 1 81 5 17577765 17577784 CCTACTAGTCCAGACGTCAC 59 17560719 17577721 CTGGCTCCTTCCATATGGG 60 Novel Rattus norvegicus 81 AABR07029639.1 ENSRNOG00000058124 ENSRNOT00000086993 1 1 1 80 10 42310899 42312568 GTACCAGAAAGGGTCTTTGTC 59 42312607 42312628 CATTTGTTCATGTCTTCTCAGG 58 Novel Rattus norvegicus 81 AC097901.1 ENSRNOG00000052984 ENSRNOT00000080737 2 1 1 80 10 44148404 44148426 CTCTTTGGATTCTCCATATCAGC 59 44147875 44148367 CTTTCTCATGGAGTCTGTTCCT 60 Novel Rattus norvegicus 81 AABR07015517.3 ENSRNOG00000061322 ENSRNOT00000091758 1 1 1 80 14 61101630 61111916 TGACATTTGAGGTGGTTGG 58 61111958 61111978 ATCTCTTCTTTCACCCAAAGG 58 Novel Rattus norvegicus 81 AABR07029768.1 ENSRNOG00000052088 ENSRNOT00000081115 3 1 1 87 10 49359603 49361411 CTCTCATAGTGAGAATGCACC 58 49359536 49359554 TCTTCCATGTCTTTGCTGG 58 Novel Rattus norvegicus 81 AABR07029895.1 ENSRNOG00000055441 ENSRNOT00000090175 3 1 1 61 10 57952034 57952052 TCGCGTTAAAGTCCAAGTC 58 57929745 57929765 TCTTAAATCATCTCTGCCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015648.1 ENSRNOG00000057570 ENSRNOT00000081907 2 1 1 96 14 68704182 68704200 TGAATGAAATGGAGGGCGT 60 68699040 68704122 ATCTGAAAGCAGCTTGGGT 60 Novel Rattus norvegicus 81 AABR07030085.1 ENSRNOG00000053262 ENSRNOT00000088849 3 1 1 62 10 66582269 66582287 TTGAGGGAGCTGCTTTCTC 60 66582778 66582796 CGTCTTCTGTGTTGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015652.1 ENSRNOG00000054995 ENSRNOT00000084963 3 1 1 75 14 68796351 68796372 CCTGTGAAACAATCTTAGGGAG 59 68790467 68790485 AGTCCTCTGCACGATTACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047389.1 ENSRNOG00000059643 ENSRNOT00000077777 3 1 1 83 5 30720856 30720875 CTGCTCAACAGTGTCTAAGG 58 30685062 30720816 CTAGTTCCATTTAGAGATAACCTGG 59 Novel Rattus norvegicus 81 LOC102550206 ENSRNOG00000058088 ENSRNOT00000088269 2 1 1 82 1 14508054 14508072 CTGTAGTAGGCTTGTGGCA 59 14508117 14508426 TGCCACTGATTATGTCTGGG 60 Novel Rattus norvegicus 81 AABR07000484.1 ENSRNOG00000054373 ENSRNOT00000077965 2 1 1 82 1 14527830 14527848 ACTTGGCCCTGAACTACTG 59 14527893 14549231 TATCCAGCTTAGTGCCACTC 59 Novel Rattus norvegicus 81 AABR07015784.1 ENSRNOG00000055215 ENSRNOT00000081644 1 1 1 98 14 76273083 76274055 GAATACTGCAGGATCCTGGA 59 76274116 76274134 TGCTGTCTCTGTCGATGTG 60 Novel Rattus norvegicus 81 AC110488.1 ENSRNOG00000011990 ENSRNOT00000015955 3 1 1 63 5 57738135 57738154 AGGGAAAGAAGAAAGGAAGG 57 57730229 57730248 CTATGACATTGATGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 3 1 1 62 10 79210688 79210707 AATCAACTTTGACGTTTGCC 58 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AC109660.1 ENSRNOG00000052427 ENSRNOT00000079555 3 1 1 83 14 83082383 83083599 AGACCAAAGCCACTAAGCT 59 83083645 83083664 AGAGTTGGAGAAGAGCAGAG 59 Novel Rattus norvegicus 81 AABR07030450.1 ENSRNOG00000055695 ENSRNOT00000077366 1 1 1 97 10 87041798 87045812 CTGTGACATAGGAGCCCAC 60 87045873 87045891 TTTACCTGTGGTCGACCAG 59 Novel Rattus norvegicus 81 AABR07015994.1 ENSRNOG00000051567 ENSRNOT00000079143 1 1 1 80 14 89947708 89947726 GTGCCAATCACTATGAGCC 59 89898024 89947665 GGATTGACTTGTCTGTCTCC 58 Novel Rattus norvegicus 81 AABR07048321.2 ENSRNOG00000061187 ENSRNOT00000080587 3 1 1 81 5 72995671 72995690 TATGGGTCTGGAAATCAGGG 59 72995835 72995853 CCCAGGTTGGTAGCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016558.2 ENSRNOG00000055797 ENSRNOT00000087831 2 1 1 118 14 103712519 103712537 TACATTATCGCTGAGGCCC 59 103712817 103712839 CCTCTCACAATTTCTCTTCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 1 2 2 94 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159818 93159838 CTTCAGATCTTGAAGTTCCGT 58 Novel Rattus norvegicus 81 AABR07061453.1 ENSRNOG00000052345 ENSRNOT00000086966 1 1 1 80 4 125607138 125607160 GATAGTAACTAGAGCTGGAGTGG 60 125605239 125607098 GGCAAGCTTCTTACTCGTG 59 Novel Rattus norvegicus 81 AABR07016621.1 ENSRNOG00000056139 ENSRNOT00000077722 2 1 1 81 14 107263331 107264529 AGGATGCCTACTCAAGATCC 59 107264573 107264591 ATAGCTGGGTAGAGATGGC 58 Novel Rattus norvegicus 81 AABR07000968.2 ENSRNOG00000061372 ENSRNOT00000083825 2 1 1 91 1 30196312 30196999 GTGAAATTTGATGCCAATGGTG 59 30197050 30197069 TTTGCATTGCTTCTTCAGCA 59 Novel Rattus norvegicus 81 AABR07030593.1 ENSRNOG00000058343 ENSRNOT00000082824 3 1 1 113 10 95145648 95145666 TGTCTTCCTCGCTTCTACC 59 95136047 95136066 TATCATGAATTTGGCACGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 1 1 1 64 14 112997204 112997224 GTCTTCACCTACTAGGAAGGA 58 112969560 112997180 ACCCATTGTAACATGACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061902.2 ENSRNOG00000054613 ENSRNOT00000081622 2 1 1 78 4 151985851 151985869 GAGTGCCTTCGGTCTACAG 60 151982212 151982230 AGTGACCAACCATTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061902.2 ENSRNOG00000054613 ENSRNOT00000081622 3 1 1 79 4 151985851 151985869 GAGTGCCTTCGGTCTACAG 60 151982211 151982230 GAGTGACCAACCATTCTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016919.1 ENSRNOG00000054585 ENSRNOT00000077506 2 1 1 81 15 5048666 5049423 AGGAGGTCAAAGTTTGATCAG 58 5048605 5048624 TCTCCAAACGCTTCATTCTC 58 Novel Rattus norvegicus 81 AABR07016947.2 ENSRNOG00000061796 ENSRNOT00000086017 1 1 1 83 15 5374939 5374958 GCGTTCAAAGGAAGATTCCT 59 5369437 5374893 TTCTCTGCTGCAATTGCAG 59 Novel Rattus norvegicus 81 AABR07049288.1 ENSRNOG00000054667 ENSRNOT00000087340 2 1 1 124 5 114037379 114037397 GTTTCCATTGCTTCCGGAC 60 114114160 114114179 CCACTTCTTTGGTCTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017048.1 ENSRNOG00000053848 ENSRNOT00000081917 2 1 1 95 15 8062151 8067327 CAACGGTAGTGAACGTCAC 59 8067386 8067404 CATCCTCTGAGCTCTCCTG 59 Novel Rattus norvegicus 81 AC118434.3 ENSRNOG00000055871 ENSRNOT00000081013 2 1 1 78 10 102765112 102766382 ACTGTGAGACCAAAGGGTG 60 102766421 102766442 GAAATCTAAGCAGCAAGTAGCA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07049389.1 ENSRNOG00000054826 ENSRNOT00000091586 3 1 1 61 5 120330034 120330053 ATTAGATCGAAGCTCCCAGG 59 120325123 120325141 GTGTTCTTCCTCTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049474.1 ENSRNOG00000051764 ENSRNOT00000085186 2 1 1 104 5 122828865 122829142 TAAGAGAAGTGCTGCAGCT 59 122829210 122829228 TTCAAGTGCACTGTTCAGG 58 Novel Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 1 1 1 60 5 123663586 123667080 GGTCTTATTATTCCTTGATGGTGG 59 123663549 123663568 ACCAAGAGCTCCTCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049503.1 ENSRNOG00000059476 ENSRNOT00000087040 1 1 1 80 5 124772451 124772472 CAAGCTGACTGGAAACTAACAC 60 124771040 124772411 ATGCTACAGTCATCTCACCC 59 Novel Rattus norvegicus 81 AABR07049508.1 ENSRNOG00000058843 ENSRNOT00000087485 1 1 1 80 5 124924698 124928629 ACAGAAACCCAAGTTTGATCC 59 124924638 124924656 TCAGCAAAGGCATCTTCTG 58 Novel Rattus norvegicus 81 AABR07017208.1 ENSRNOG00000055393 ENSRNOT00000083766 3 1 1 63 15 17954184 17954202 GAACTATGGCTGGCATGTG 59 17951576 17951594 AATTCTGGCATGAGTTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086246 3 1 3 117 1 38842055 38842074 GAAACTCAGCAAGAAGCCAG 60 38836991 38837009 CATACTTGGTCCTGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 1 3 3 82 20 56198702 56199212 TGGTTATGCAAATCAGAACCTG 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07062404.4 ENSRNOG00000061000 ENSRNOT00000078565 1 1 1 82 4 175178066 175201219 ACATTGTCGAACAGATCCG 58 175178002 175178020 CTTGGATGCCAGTTCTTGG 59 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 3 1 1 61 5 132777765 132777785 AACATCAAGCTCATGTCACTG 59 132777804 132791315 GCTTCACCTCTAGGTAAATATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062502.1 ENSRNOG00000060730 ENSRNOT00000089565 3 1 1 83 4 180142418 180150424 GCCAGTTTGTATCAAGTTCTC 57 180142355 180142373 AGGAGTTAACAAGCCTCAC 57 Novel Rattus norvegicus 81 AABR07031590.1 ENSRNOG00000059828 ENSRNOT00000089678 3 1 1 119 18 21163972 21167137 CAATGTGTCACCAGGAGTG 59 21167217 21167238 GCGTTGACATAAATGTTGACAG 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 3 2 3 90 1 47513247 47513265 CACTTCATCCGCATTACCC 59 47513319 47513703 TTCTTCTGAACGTGGACCC 60 Novel Rattus norvegicus 81 AABR07017814.1 ENSRNOG00000058542 ENSRNOT00000089808 3 1 1 80 15 31308672 31308816 GATACATTATTTCCTGGGAGGT 58 31308855 31308875 GAGTCTCCTTCAAAGACAGTG 58 Novel Rattus norvegicus 81 AABR07031740.1 ENSRNOG00000057082 ENSRNOT00000089581 1 1 1 69 18 31305840 31305858 GTCTGAAGAGACCGCAGAG 60 31296204 31296222 TGGTCTTCTGTTCCCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC115371.3 ENSRNOG00000054637 ENSRNOT00000077945 2 1 1 98 15 33503027 33504937 AACAATTCTGGTCAGAGGGA 59 33508523 33508541 TCCCATCTGTCTGTGTTGG 59 Novel Rattus norvegicus 81 AABR07001619.1 ENSRNOG00000053004 ENSRNOT00000088831 1 1 1 104 1 54297911 54300406 CCTGGAAAGTTCATCCACAG 59 54300473 54300491 TCAGTGTCCACTAGCACAG 59 Novel Rattus norvegicus 81 AABR07001662.1 ENSRNOG00000054056 ENSRNOT00000092209 1 1 1 80 1 54882841 54883328 CTTTCTCAGGAAAGGGCAG 58 54882779 54882797 GAGGATGCCTTGATTTGCA 59 Novel Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 1 1 1 74 15 40480838 40481467 CTTCAATTCCTTCTGCTCGT 58 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.1 ENSRNOG00000057282 ENSRNOT00000088498 2 1 1 80 18 47924647 47924666 CAAGTCAGCAGAGACTTTGG 59 47923388 47924607 GGAGTTCTTCTCCTTTACTCTG 58 Novel Rattus norvegicus 81 AABR07050134.1 ENSRNOG00000057126 ENSRNOT00000087947 2 1 1 63 5 153015118 153015137 AAATCGACATCTCCTGTGTC 58 153014606 153014624 CAGACCTCACCAAATTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001799.1 ENSRNOG00000052286 ENSRNOT00000084574 1 1 1 80 1 57999553 58094539 GAGATTGAGGCTTAAAGAATCCC 59 58094578 58094597 TTGGCACTTGTCACTTTCTG 59 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 1 1 1 80 5 157135474 157135492 GTAAACGGATGCATGATGC 58 157135534 157136077 TTCTTGGAGCTTCCATTTCTC 58 Novel Rattus norvegicus 81 AABR07050274.1 ENSRNOG00000053597 ENSRNOT00000086353 2 1 1 101 5 158973648 158973667 GTGTTCTGTTACAAGCTCCC 59 158971330 158971348 GAACAGAACAGGCCAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032261.4 ENSRNOG00000056368 ENSRNOT00000087269 1 1 1 80 18 57522019 57533634 CGATAAGTACTAACAGAGACCC 58 57521960 57521978 AAGTCCCACGTGTAAACTG 58 Novel Rattus norvegicus 81 AABR07032261.4 ENSRNOG00000056368 ENSRNOT00000087269 2 1 1 81 18 57522020 57533635 CCGATAAGTACTAACAGAGACC 58 57521960 57521978 AAGTCCCACGTGTAAACTG 58 Novel Rattus norvegicus 81 AABR07050415.1 ENSRNOG00000055071 ENSRNOT00000078178 3 1 1 80 5 164240323 164240341 CCTTAAGCTGCAGTTGCTG 60 164235716 164240281 CAAATATCATGGGTTCTGGCA 59 Novel Rattus norvegicus 81 AABR07032422.1 ENSRNOG00000055882 ENSRNOT00000077969 1 1 1 60 18 64792693 64794070 ACTGGTCCTTGAATGCCTC 60 64792651 64792672 AAGGAGAAGCAGTTAGAATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07050648.1 ENSRNOG00000059071 ENSRNOT00000089887 3 1 1 69 5 172176793 172176811 ACACAGTGAAGATGGAGCC 60 172176021 172176040 TAGAGCCATTGGTGGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050652.1 ENSRNOG00000057101 ENSRNOT00000091594 3 1 1 80 5 172775754 172775775 GTAGTGTGCTGTCAATTCTCAG 59 172774183 172775715 CCAAACACAGATTCCTACAGG 59 Novel Rattus norvegicus 81 AABR07063746.1 ENSRNOG00000054844 ENSRNOT00000081221 1 1 1 80 6 45649320 45649886 TTCATCTGCTCCAAATCTACAC 59 45649927 45649945 GGTGCTCTTGACTTCTGAG 58 Novel Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000079226 1 1 2 80 18 68552207 68679752 AGAAGACCAAGGAGGACAC 59 68552145 68552165 GGTAAGATCTGCTAGGGTGAG 60 Novel Rattus norvegicus 81 AABR07018837.1 ENSRNOG00000059235 ENSRNOT00000088967 3 1 1 82 15 75319064 75331265 AGGAATAAACGGTTACATGAGG 58 75331305 75331326 TAACTGGAAATGTAGTTCCTGG 58 Novel Rattus norvegicus 81 AABR07063811.1 ENSRNOG00000053737 ENSRNOT00000082540 3 1 1 80 6 50354898 50354918 TTTCAGATGAAGACTTGCTGC 59 50287729 50354857 AACAGTTCTGAGACCCTGTC 59 Novel Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 1 1 1 61 15 84004971 84004991 CCATCTTGCCTCTAAGTTCAG 59 84005013 84009871 GGAGCAATGCAAACTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002868.2 ENSRNOG00000057222 ENSRNOT00000080831 1 1 1 80 1 87560473 87560492 CTTCTCCAGGTCATGATCCT 59 87560532 87562814 GAACATCACCATACTATGAGCC 59 Novel Rattus norvegicus 81 AABR07064011.2 ENSRNOG00000051862 ENSRNOT00000079507 1 1 1 80 6 60188017 60188037 AAGTGGAAGTCTCTGTGACTG 60 60186632 60187975 GAGGTGTCTCTGCTACCAG 59 Novel Rattus norvegicus 81 AABR07051332.1 ENSRNOG00000053371 ENSRNOT00000090398 1 1 1 130 3 4988254 4988272 TATGTGCAGCTCAACATGC 59 4988613 4988631 TTCAGAGACAGCACTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 1 1 1 110 18 78944655 78944673 TACAAGATACACCCAGGCA 58 78941247 78944581 GAGAAAGGTAACCGTTCCC 58 Novel Rattus norvegicus 81 AABR07064373.1 ENSRNOG00000059292 ENSRNOT00000088398 3 1 1 81 6 77394078 77394098 ATCAGAGATCTGATAAGTGCC 57 77378730 77394036 GATCCCAGAGCAGTATTCAG 58 Novel Rattus norvegicus 81 AABR07002969.1 ENSRNOG00000052945 ENSRNOT00000077404 1 1 1 80 1 90832058 90832076 GACACTGGAAAGTCAACCC 58 90832118 90848614 CTCCTTGGAATGGATCTTTCC 59 Novel Rattus norvegicus 81 AABR07019387.2 ENSRNOG00000058656 ENSRNOT00000078015 2 1 1 83 15 103524432 103533407 ATACACAAAGATTACGGCGG 59 103533452 103533471 AATTAGTCTCTGGTGTGCTG 58 Novel Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 3 1 1 60 6 87874932 87874950 AATGGCAACTTCATCTCCG 58 87871431 87871452 ATTAGAAGCTTGAGATCACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051592.1 ENSRNOG00000052953 ENSRNOT00000081264 2 1 1 80 3 17648872 17649009 TGCTGTGGATAACAGATGGA 59 17649052 17649070 CAGTTTCTCCCAGAGATGC 58 Novel Rattus norvegicus 81 AABR07051592.2 ENSRNOG00000054125 ENSRNOT00000089977 1 1 1 80 3 17667339 17667481 GATAACAGATGGCATATGCGAC 60 17667519 17667540 ATGGAGATAGTTTCTCCCAGAG 59 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 1 1 1 62 18 85814357 85816847 GTACTATACATATGTACCTGGGC 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051716.2 ENSRNOG00000060987 ENSRNOT00000083888 2 1 1 81 3 20015188 20015608 TTGTGGATTCCTGCTTCCA 59 20015653 20015671 AGGCTTGATTTCCAAGGCT 60 Novel Rattus norvegicus 81 AABR07065042.1 ENSRNOG00000054814 ENSRNOT00000084962 2 1 1 80 6 105316307 105317327 GAGGTTGGAGACAGTTTCAG 58 105317369 105317388 AAAGACGTAAGGATCAGTGG 57 Novel Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 3 1 1 60 3 25350865 25350885 GTGTTTCATCAAGGTTCTGGT 59 25335866 25350844 TTCTCATCAGAACCATCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051882.2 ENSRNOG00000060195 ENSRNOT00000086466 1 1 1 87 3 25414326 25414491 CAGATGAACTTAACTGTGACAC 57 25414260 25414278 CTGAGGTTTACTGGGATGC 58 Novel Rattus norvegicus 81 AC120807.1 ENSRNOG00000053946 ENSRNOT00000082025 2 1 1 134 1 102087257 102087275 GAAATGTGGAAGACGGAGC 59 102087373 102088599 TCCAATTCCAGTCCACCTG 59 Novel Rattus norvegicus 81 AABR07020744.1 ENSRNOG00000060402 ENSRNOT00000087283 3 1 1 83 13 38191284 38206387 AGTCTCAGAAAGACAGAACCC 60 38191221 38191244 CTGACCTTTAGTTTCAACTAGCAG 60 Novel Rattus norvegicus 81 AABR07065091.1 ENSRNOG00000057609 ENSRNOT00000088059 3 1 1 189 6 109312677 109312695 AAGGTTAGGAAGGCTCCTC 58 109314749 109314767 CTTCTCCGAGTGAGCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033666.1 ENSRNOG00000055823 ENSRNOT00000085292 1 1 1 107 11 34313560 34313578 TTCGAGGCTATGGAACTGG 59 34310346 34310368 GGCTGAGCATATTCTAGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 1 1 1 80 13 50802378 50802396 TGTGCAGAGTTCTTGGAGG 60 50802440 50803841 TTTGTGCAGGTTGTCAGTG 59 Novel Rattus norvegicus 81 AABR07021018.2 ENSRNOG00000059794 ENSRNOT00000078481 1 1 1 80 13 53649158 53649176 GCAGGCGACAAATACAGAG 59 53649218 53651985 GCTTTCTGCAGGTAAACAGAG 60 Novel Rattus norvegicus 81 AABR07021221.1 ENSRNOG00000052921 ENSRNOT00000086824 1 1 1 63 13 61423319 61423337 GAAACAAACATCGAGGCCA 59 61422836 61422859 GTAGGAGAAGACTTAGTCTATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003392.1 ENSRNOG00000061672 ENSRNOT00000084001 1 1 1 60 1 108641550 108641571 AACCCACCAAATTCACTTTGAG 60 108617886 108617905 GCAGGATACTCTTGTGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003418.1 ENSRNOG00000051394 ENSRNOT00000091509 3 1 1 84 1 109462469 109462488 TCTTCTGAGCTCCACATCTG 59 109462531 109463698 CAGGGAAATCTTCATACACAGTG 60 Novel Rattus norvegicus 81 AC141136.1 ENSRNOG00000052394 ENSRNOT00000083923 2 1 1 81 11 43028696 43029958 CACACTCACCAGGAATCTG 58 43030003 43030021 ATCATGCTCCAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07021465.2 ENSRNOG00000058710 ENSRNOT00000083523 3 1 1 81 13 73868446 73868465 ACATTTGTAGATCAGGTGGC 58 73867931 73868403 GAGCGGAAGTATCAACATGG 59 Novel Rattus norvegicus 81 AABR07065349.1 ENSRNOG00000054787 ENSRNOT00000083679 3 1 1 84 6 123153246 123153610 GTTGAAATGTGTTTCCTCCAG 58 123153182 123153201 GAGATTCGTTCTGAGGTGAG 58 Novel Rattus norvegicus 81 AABR07003786.1 ENSRNOG00000051576 ENSRNOT00000092146 3 1 1 89 1 118322697 118324430 GGCAATTAATCTACCGTGGT 58 118322627 118322646 TATAGTTCAGTCGTAGGGCA 58 Novel Rattus norvegicus 81 AABR07052568.1 ENSRNOG00000051523 ENSRNOT00000091684 1 1 1 74 3 61967560 61967578 CTCACACTGAAGGCTTTGG 59 61967848 61967868 GCACTGATATGTCAAATGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021636.1 ENSRNOG00000056222 ENSRNOT00000088180 3 1 1 80 13 83138214 83138234 TGGAAACACATTTCACTCTCC 59 83130012 83138172 AAGCCTGAAGTTCCAAGTC 58 Novel Rattus norvegicus 81 AABR07052598.1 ENSRNOG00000055544 ENSRNOT00000081155 3 1 1 82 3 65028839 65028860 CGTAATGAATCGGTTGAATGCT 60 65027327 65028797 CCAGACGGTCTCTTGTACTG 60 Novel Rattus norvegicus 81 AABR07004090.1 ENSRNOG00000056061 ENSRNOT00000082014 3 1 1 101 1 124300109 124311484 CATCCTGTTTCTAATGGTACTTCTC 59 124300032 124300051 AGATGTTTCCATGTGCTTGC 60 Novel Rattus norvegicus 81 AABR07052608.1 ENSRNOG00000051580 ENSRNOT00000089321 3 1 1 107 3 65954407 65954425 TCTCTGTCCAGTCAGTTGG 59 65954496 65992061 AGAATCACCACTAGCTGCT 58 Novel Rattus norvegicus 81 AABR07004136.1 ENSRNOG00000061645 ENSRNOT00000082877 2 1 1 80 1 126694890 126694908 GTCCACCTTGGATCTTCGA 59 126692045 126694846 CAGATTCAACCTGCTTGCC 60 Novel Rattus norvegicus 81 AABR07021888.1 ENSRNOG00000061007 ENSRNOT00000082330 3 1 1 80 13 96756437 96756456 TGCAACTCATTCACCATCTG 59 96756496 96757889 GTGATTCAGCAAAGACATACTG 58 Novel Rattus norvegicus 81 AABR07052750.2 ENSRNOG00000060591 ENSRNOT00000080439 1 1 1 80 3 71947944 71950950 AGTGAGCTAAGAGGTCCTG 58 71950992 71951012 TACACCTTCTCTTTGAACTGG 58 Novel Rattus norvegicus 81 AABR07004221.1 ENSRNOG00000051696 ENSRNOT00000086793 3 1 1 104 1 130652246 130652265 AATATCGTGGTTGCTCTCCA 59 130651257 130651275 AAAGTCTGGCTACAAAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC110403.1 ENSRNOG00000059701 ENSRNOT00000088915 1 1 1 110 3 72845452 72845471 CAGAGATCCAAGGTTCTGTG 58 72844584 72844605 ACTTTAGACACAGAAGTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000089751 3 1 2 80 13 101998643 101999236 TTCAGTGAGGTGTCAGTCAG 59 101999277 101999297 ATCAGGAGTAGACAAGAAGCC 59 Novel Rattus norvegicus 81 AABR07052894.1 ENSRNOG00000060152 ENSRNOT00000081781 2 1 1 60 3 81753761 81754094 AATGAAAGGAGAAGACAGCG 58 81753720 81753738 TGCACCTCAAGGATGAGTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000085147 1 2 3 140 12 3213530 3221988 TGTCATCTTCCTTCAGATTCAC 58 3223424 3223445 GTCCTTTCTCTGCAATTATGGA 59 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000085147 2 2 3 141 12 3213530 3221988 TGTCATCTTCCTTCAGATTCAC 58 3223425 3223446 TGTCCTTTCTCTGCAATTATGG 59 Novel Rattus norvegicus 81 AABR07022072.2 ENSRNOG00000058959 ENSRNOT00000087282 3 1 1 61 13 105852680 105852699 CTCACAAGTCTGTCTCCTGG 60 105847960 105847978 TCTAAAGGGCTCCAAACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024444.1 ENSRNOG00000051437 ENSRNOT00000091395 1 1 1 80 16 328512 332793 CCTGGCCAGATTCAAAGGA 60 332836 332855 CAAATGTAACCATGGCCCTG 60 Novel Rattus norvegicus 81 AABR07024491.1 ENSRNOG00000055392 ENSRNOT00000083207 3 1 1 81 16 1455310 1456802 TTCCTTGCCTACATAGCCTC 59 1455248 1455266 AATGCAGCTACTCCTTGCA 60 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000082137 3 1 2 95 12 10130537 10130555 GTGTGGCAGAGAACTTGTG 59 10130278 10130478 CTTCTGGCAGAATCTGCAC 59 Novel Rattus norvegicus 81 AABR07066436.1 ENSRNOG00000060948 ENSRNOT00000092074 2 1 1 81 9 8864580 8864599 CTATGTGGAGGCAAAGAGGT 60 8857669 8864536 TTCAACATCCAGCTGTTGC 59 Novel Rattus norvegicus 81 AABR07004482.2 ENSRNOG00000059905 ENSRNOT00000083794 2 1 1 95 1 144895956 144895975 ATAAATCCAGTCGCTGAGTG 58 144892230 144895900 AGAACAGACCTGAAATGTCTC 58 Novel Rattus norvegicus 81 AABR07066470.1 ENSRNOG00000054362 ENSRNOT00000087249 2 1 1 145 9 9087118 9087136 TCAGCAGGTTGGGTATGTG 60 9104432 9104450 CTCCTTGTGCCTATGTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000092035 1 1 2 164 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778561 21778700 AAGGGATTGGTGAAGGCTC 60 Novel Rattus norvegicus 81 AABR07035778.1 ENSRNOG00000054206 ENSRNOT00000079605 1 1 1 80 12 22294186 22294204 TTCTCAGGACATCCTGGAC 58 22294246 22294880 CACCACCATGAACTGTATCTG 59 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 2 1 1 61 12 22339005 22339023 AAATCTCAATGTGGCTGCA 58 22339048 22339404 ATCCAGTTCTTCCCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004868.2 ENSRNOG00000057308 ENSRNOT00000082386 2 1 1 86 1 163459610 163459628 TCTTCTGAGGAGATGGCCT 60 163459678 163460810 TTGGAAGCTCTCCTGAGTG 59 Novel Rattus norvegicus 81 AABR07066870.1 ENSRNOG00000061014 ENSRNOT00000082099 3 1 1 102 9 20339528 20340805 TTGGATAACAAGATGCGGC 59 20332771 20332791 TCGGCTTGGTAACAATATCTG 58 Novel Rattus norvegicus 81 AABR07024951.1 ENSRNOG00000060620 ENSRNOT00000080347 1 1 1 88 16 22311703 22317817 AGTAACTATCCCAGAGTTGGG 59 22311635 22311653 TTTCATCTCCACCGTCCTG 59 Novel Rattus norvegicus 81 AABR07024951.1 ENSRNOG00000060620 ENSRNOT00000080347 2 1 1 89 16 22311703 22317817 AGTAACTATCCCAGAGTTGGG 59 22311634 22311652 CTTTCATCTCCACCGTCCT 59 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 3 1 1 110 16 22562844 22562862 CTCTTGCCAGCTTTCAAGG 59 22562009 22562774 GCAATATGGATCTCCTTCTTCTC 59 Novel Rattus norvegicus 81 AABR07035780.1 ENSRNOG00000056032 ENSRNOT00000089026 2 1 1 99 12 22375084 22375102 AAGGATCCTTTCAGTGCCA 59 22375164 22375276 CACTTCATAGTGCTGGAGAC 58 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000080625 3 1 2 80 16 31172100 31172202 AAGGATCAGATCAGGTTCCTG 59 31171899 31171919 CCTGGCCCTATTTATCCTCTC 60 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 1 1 1 139 9 27326026 27326044 CATCCAGAGAAGCGGAGAG 60 27325784 27325802 CATCCTCTGACAGGTTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005508.1 ENSRNOG00000061369 ENSRNOT00000088187 1 1 1 89 1 183892305 183892323 GAAGTTGGATCACGTACCC 58 183885279 183892253 TATGCTTGTCTCACTAGGCA 59 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000084175 2 1 3 108 3 142319193 142319211 AGATGGCTTTCCCAACTCC 60 142280708 142319124 TCAGGATAAACTTCAATGCCCT 60 Novel Rattus norvegicus 81 AABR07067404.2 ENSRNOG00000057258 ENSRNOT00000081049 1 1 1 80 9 43495572 43496041 TCTCTACATCTACTGTGTATCCTC 59 43496075 43496098 CACAGTAGATACTAAGAGGATCAC 58 Novel Rattus norvegicus 81 AABR07067456.1 ENSRNOG00000058462 ENSRNOT00000086954 2 1 1 122 9 46890409 46890428 GTAACTGAGAACTGCCAGAG 58 46890513 46891219 GAAGTTGACACAGCTTCCT 58 Novel Rattus norvegicus 81 AABR07036302.2 ENSRNOG00000060862 ENSRNOT00000089655 1 1 1 80 12 37055823 37055841 AGAGTGGCTTCTAGACAGC 59 37055884 37056833 ACATCTATCCCTGTCCATCC 58 Novel Rattus norvegicus 81 AABR07036304.1 ENSRNOG00000057802 ENSRNOT00000085196 1 1 1 67 12 37106468 37106486 TAGTCACTGAAGTTGCCTG 57 37117530 37117548 ATACTAACGTCCAGGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054445.1 ENSRNOG00000054537 ENSRNOT00000089702 3 1 1 60 3 153935314 153935333 ACACGTAGACAGAGACAAGG 59 153934279 153934297 GATTGTTGCCACTTTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036391.1 ENSRNOG00000055489 ENSRNOT00000086158 1 1 1 80 12 41593979 41593998 AGATGAAATGCCTGTCTGGA 59 41594041 41594966 GCTCCAAAGAAGCTGTCTG 59 Novel Rattus norvegicus 81 AABR07026032.2 ENSRNOG00000057634 ENSRNOT00000090326 2 1 1 80 16 60082382 60083145 GACAGCATAGAGTATAACATACTGC 59 60082326 60082346 TTTCATTTGGAATCGACCTGG 59 Novel Rattus norvegicus 81 AABR07036406.2 ENSRNOG00000056161 ENSRNOT00000087400 1 1 1 88 12 42076152 42076170 TGGTCAGGTCTCTTCAGAG 58 42074576 42076103 CAACATGTCCTGATTGTAACTG 58 Novel Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 1 1 1 80 3 156453305 156453323 GTCTGGATGCTGAGAAGGG 60 156426589 156453263 GGGAAGGGTCATAGTACACTC 59 Novel Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 3 1 1 80 3 156426589 156453263 GAGTGTACTATGACCCTTCCC 59 156426529 156426548 GATGTGGAGGTAGGAACTGG 60 Novel Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000087549 1 1 2 70 16 65178783 65178802 GGGAGAAGCAGTTTCAAGAC 59 65254108 65254126 ATCCTCAGACACTTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026197.1 ENSRNOG00000054467 ENSRNOT00000083218 1 1 1 113 16 67038465 67038486 CCGGTATTATAATGCCAATGGG 59 67037869 67038391 TTGAACTCTCGAAGCTGCT 59 Novel Rattus norvegicus 81 AC113785.1 ENSRNOG00000059361 ENSRNOT00000088569 3 1 1 80 16 69022586 69022604 AAGCCATTCCACTCAAGGA 59 69009856 69022543 AAGCCAGAAATCACCTAGCT 59 Novel Rattus norvegicus 81 AABR07054583.1 ENSRNOG00000057311 ENSRNOT00000085951 2 1 1 98 3 162251485 162254143 CTTCACTCACTTCAGAGGG 57 162254204 162254223 TTATTTGGTCCCACGATGAG 58 Novel Rattus norvegicus 81 AC095390.1 ENSRNOG00000052761 ENSRNOT00000077618 3 1 1 109 12 51760388 51822456 ATGAATTGACCCAGCAAGG 58 51760297 51760315 TCTTCATGTTCTTGCCAGC 59 Novel Rattus norvegicus 81 AABR07068035.1 ENSRNOG00000057294 ENSRNOT00000078904 1 1 1 100 9 78487468 78487486 AAGGCCCAATTCAAACCAG 59 78487550 78501517 CCACAGTACAGAGACCTGG 59 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 1 1 1 86 3 171081386 171082682 TCTTCCAGGAGAGGAGAGG 59 171081318 171081336 GAGACCAAGCTCAGATGGG 60 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 3 1 1 88 3 171081387 171082684 AGTCTTCCAGGAGAGGAGAG 60 171081318 171081336 GAGACCAAGCTCAGATGGG 60 Novel Rattus norvegicus 81 AABR07037698.1 ENSRNOG00000054904 ENSRNOT00000080867 1 1 1 82 X 28578642 28578660 ACCTCGAGATCATCTACCC 58 28578705 28582287 CCAACAATATGATCCTGCAC 57 Novel Rattus norvegicus 81 AABR07037708.1 ENSRNOG00000052695 ENSRNOT00000092116 1 1 1 80 X 28698808 28698827 ATCCTCCTGTCTCTACCTCC 60 28688919 28698771 CCTTCTTCGTCAAAGTATCTTAGAC 59 Novel Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 2 1 1 61 9 86775873 86775893 TCTGAAGTTACGAATGAGGGA 59 86775914 86781368 CTCTGATTGCTAAGCATGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 2 1 1 80 X 35154476 35154495 ACGTCTATGGCAATATGCAG 58 35151744 35154434 TGTCCTGAAGAAATTCTCGG 58 Novel Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 1 2 2 80 3 177390148 177390166 GACAAGCAGGAGAAGTGGA 59 177390209 177392115 TTTCCCTTCTTCCTCAGGTG 59 Novel Rattus norvegicus 81 AABR07054991.1 ENSRNOG00000060218 ENSRNOT00000086637 1 1 1 91 3 177457795 177457909 GGATGTGAAGTTTATCTTTCTCCTG 60 177457728 177457746 TCCTGTGTAAGGAGCACTG 59 Novel Rattus norvegicus 81 AABR07026519.1 ENSRNOG00000057746 ENSRNOT00000087361 1 1 1 61 16 80703766 80703784 CAGGAAGTGACCTCACAGG 60 80702528 80702546 CCACCTTATGTTGCAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068198.3 ENSRNOG00000056997 ENSRNOT00000088218 3 1 1 60 9 89722445 89722466 TCCACAGTTGACTTTAATGTCG 59 89719312 89719330 GATGGAGGTAAGGAGTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068198.2 ENSRNOG00000054702 ENSRNOT00000081485 1 1 1 95 9 89928370 89929096 TTGAAGACTTTGCTGCGAG 59 89929155 89929173 CTCTGTAACTGCCAAGTGC 59 Novel Rattus norvegicus 81 AC096938.1 ENSRNOG00000059836 ENSRNOT00000087316 2 1 1 68 16 82123529 82123547 CACACTAACCAACACGGAG 59 82120947 82120965 GTACAAGGTGAGGAAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.3 ENSRNOG00000058489 ENSRNOT00000081861 2 1 1 89 16 82307785 82308710 TCTGTGAAGACAGCTCAGG 59 82307714 82307732 GAAGCCAGGAAACATGCAG 60 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 1 1 1 84 X 65111797 65111815 TTAACTTTCTGCTGCCCTG 58 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.1 ENSRNOG00000056333 ENSRNOT00000077932 3 1 1 89 16 82357732 82357750 TCTGACTGGGTCTTGAAGC 59 82357799 82359111 CTGACTGGAATTCTTGTCTTCAG 60 Novel Rattus norvegicus 81 AABR07026557.2 ENSRNOG00000061488 ENSRNOT00000081647 3 1 1 132 16 83203352 83203370 TGTGCCACAGTTTGTTCTG 59 83198833 83203256 TGGAGAGGAGTTCTTTGCC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07039133.1 ENSRNOG00000055432 ENSRNOT00000085077 2 1 1 88 X 69033064 69033082 ATTCTGCAGGATCCGTTCC 60 68998563 69033013 TGGAAAGAGCTCCAATCCAG 60 Novel Rattus norvegicus 81 AABR07039139.2 ENSRNOG00000052595 ENSRNOT00000077149 2 1 1 99 X 69207717 69207736 GAATAACCATTGGTGGCTGG 59 69212239 69212257 CTCTTCTGGTGGGTTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068308.1 ENSRNOG00000056453 ENSRNOT00000087447 3 1 1 60 9 97539927 97539946 TGATCTTCTGCAAGGTTCCA 59 97538730 97538751 TCACTGATCACTGGATTCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056425.1 ENSRNOG00000061877 ENSRNOT00000079296 3 1 1 122 7 25004527 25005161 ATCACAGGCCTCAAGACTG 59 25006359 25006378 AATATTTGGCTTGCCTAGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 3 2 2 85 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146056 26146075 ATACCTTCTGGTGCATTCCA 59 Novel Rattus norvegicus 81 AABR07042654.3 ENSRNOG00000060758 ENSRNOT00000079060 2 1 1 80 19 1572653 1572671 CTCCTGGGACAACTTAGCA 59 1572498 1572610 AACAGCGTGATAACTTTGGG 59 Novel Rattus norvegicus 81 AC139608.2 ENSRNOG00000054905 ENSRNOT00000082237 3 1 1 63 17 9422116 9427087 CATGTCTTCAGATGCGCAG 59 9422071 9422092 TTTCAAGTCAGGAATAAGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056509.1 ENSRNOG00000054383 ENSRNOT00000085247 1 1 1 145 7 27589983 27590001 CGGGATCGACATCATTCTC 58 27591054 27591072 ACTGTTCTGCACTCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068799.1 ENSRNOG00000052844 ENSRNOT00000079914 1 1 1 80 9 119948081 119948894 AATTTGCCAGTGCCATATCAG 59 119948936 119948954 CCGTAGTTCCAGGATTCCA 59 Novel Rattus norvegicus 81 AC096370.1 ENSRNOG00000055937 ENSRNOT00000089366 3 1 1 106 1 259606776 259608220 GATCCGGAAGAGCTCTTCC 60 259608289 259608308 ATTGTGGTCTCAGACAGCTC 60 Novel Rattus norvegicus 81 AABR07027072.1 ENSRNOG00000053171 ENSRNOT00000091031 3 1 1 60 17 13057568 13069334 TTACTGAGCATGATGGAGC 57 13057526 13057544 ACTCGAGTATGTGGTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07027155.1 ENSRNOG00000057010 ENSRNOT00000078364 2 1 1 80 17 16984314 16997700 CATTGAAACCCTGAGTACACG 59 16997742 16997760 TTCATGGTTTCGCAGTCTG 59 Novel Rattus norvegicus 81 AABR07056678.1 ENSRNOG00000059437 ENSRNOT00000088749 3 1 1 80 7 35699168 35699186 CCATCTATTCCTGTCACCG 57 35698150 35699125 TTGCTAGAACTTTCTGGTCC 58 Novel Rattus norvegicus 81 AABR07056791.1 ENSRNOG00000055691 ENSRNOT00000081059 1 1 1 120 7 41415435 41416601 TTGATCTTAGCACACCACCA 59 41415334 41415358 CGAAGTCTTTATTGTGATCCTTCTC 60 Novel Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 3 1 1 61 8 12794659 12822958 ATCACGGTCATCACAAGCT 59 12794616 12794639 GGTTGATACAGAGAATCCAAATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006911.1 ENSRNOG00000053954 ENSRNOT00000080845 3 1 1 129 1 270729799 270729817 AGAAGTACCTGGACAACGG 59 270712205 270712224 GTAGATTCTGCCAGGTTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043030.2 ENSRNOG00000058644 ENSRNOT00000087582 2 1 1 93 19 17930223 17930241 GTTAGTCTGAGAGGGCCAC 60 17930295 17939338 AGTCGTTTGTCTCTTTGAAACC 60 Novel Rattus norvegicus 81 AABR07056998.1 ENSRNOG00000052964 ENSRNOT00000083398 1 1 1 65 7 50639892 50639910 TAAAGGGCTTTCTCCCTCC 59 50639939 50640311 GATGCCACGATCATCTTGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07069454.1 ENSRNOG00000059163 ENSRNOT00000079540 1 1 1 80 8 23178283 23179277 GGCAGAATCTTAAGCAACCA 59 23179319 23179338 GTCGTGGTCAAGAATTTGGT 59 Novel Rattus norvegicus 81 AABR07043035.1 ENSRNOG00000055856 ENSRNOT00000083730 3 1 1 80 19 18431558 18431658 ACAACATCATCTGCTCACAG 58 18431700 18431719 ACAGTTGACAGGAGGTATCG 59 Novel Rattus norvegicus 81 LOC102546383 ENSRNOG00000052557 ENSRNOT00000083644 3 1 1 80 17 27390105 27393482 GGATGGTGCTGTCTATTCC 58 27393523 27393544 AAGTTGTAGAGGACTAGAGGAC 59 Novel Rattus norvegicus 81 AABR07043098.2 ENSRNOG00000059743 ENSRNOT00000089051 2 1 1 106 19 20572452 20572470 CATGGCTAGCAGGATAGGG 59 20572537 20587611 GACAAGCAAGGAAATTGTTCTC 59 Novel Rattus norvegicus 81 AABR07043098.2 ENSRNOG00000059743 ENSRNOT00000089051 3 1 1 107 19 20572451 20572469 ACATGGCTAGCAGGATAGG 59 20572537 20587611 GACAAGCAAGGAAATTGTTCTC 59 Novel Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 2 1 1 85 19 20784100 20784118 GAACGAAGCTGGTGAAAGG 59 20774729 20784054 CATCTGGGAAATTTGCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.2 ENSRNOG00000054220 ENSRNOT00000089190 1 1 1 80 17 28008575 28008703 TAGAAACACCCTCAGGTCAG 59 28008514 28008533 CCTTTCTGTCTGGGAAAGGA 59 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 1 1 1 79 7 62236168 62236949 CTTCCTTCCTCATGGACGG 60 62236992 62237010 CTTCAGTCTTGAGCTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC110709.2 ENSRNOG00000056269 ENSRNOT00000081549 2 1 1 82 1 274377426 274381312 GTCTGGAAGGTCTGGACAC 60 274381356 274381376 TGTCCTCTGGTCTTTAAGTGG 60 Novel Rattus norvegicus 81 AABR07069728.1 ENSRNOG00000058251 ENSRNOT00000090767 3 1 1 80 8 38128782 38128803 ATTGGGAATCATTTCAGCTCTC 59 38128843 38128992 AATGTAGTGGACCCTCTGAG 59 Novel Rattus norvegicus 81 AABR07069733.1 ENSRNOG00000058081 ENSRNOT00000082354 2 1 1 99 8 38422276 38422295 AGACTCCAGTGAGATTTGTC 57 38421821 38422217 CTGAAATGATAGTTCTGTGAGC 57 Novel Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 3 1 1 61 17 37332686 37337128 GCAGAAGTTGGACTCAGAG 58 37337153 37337171 TCCTCAGTGGAAGACTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057436.1 ENSRNOG00000055483 ENSRNOT00000086346 1 1 1 83 7 71103443 71104220 GCATCATGAAAGTCCAGGG 59 71104267 71104285 TCAACCCTGACTGTATGGG 59 Novel Rattus norvegicus 81 AC098190.1 ENSRNOG00000057169 ENSRNOT00000087051 2 1 1 70 2 5881487 5881506 GGTTGAGCCAATGAGATCTG 59 5879355 5879374 GGCTGCTCTGGAATATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057611.1 ENSRNOG00000058911 ENSRNOT00000082925 3 1 1 84 7 80165131 80165150 CCTTTATTGCCTGAGAACCT 58 80164751 80165084 TGCATATTTCCCTTGGCTC 58 Novel Rattus norvegicus 81 AC103227.1 ENSRNOG00000056707 ENSRNOT00000085541 2 1 1 84 2 11195419 11195437 TAACCAAGCCAGAAGACTG 57 11194531 11195374 GTAAATAACCTCTGAAAGCAGC 58 Novel Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 3 1 1 89 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701380 81701398 GAAACCAGAGTCTCTGTGC 58 Novel Rattus norvegicus 81 AABR07057633.1 ENSRNOG00000053925 ENSRNOT00000080336 3 1 1 81 7 81884325 81884346 GAAGAACTCAGACATACAAGCC 59 81884384 81899746 CAAGAGTTGCTTCTTCAGAAGAG 60 Novel Rattus norvegicus 81 AABR07007409.1 ENSRNOG00000058632 ENSRNOT00000084327 1 1 1 71 2 13055058 13055082 GTGTGAATAGAATCAGAAGGTTCTC 60 13054484 13054502 ATCACCGTTCTTTGAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000090255 2 1 2 80 19 39502520 39502538 TTCATCTCATTGCTCAGCG 58 39502577 39536202 GAGAAGATCATAGACAGATTCTCG 59 Novel Rattus norvegicus 81 AABR07070122.1 ENSRNOG00000061391 ENSRNOT00000080725 3 1 1 82 8 53558569 53560971 AGCATTAGGCACTACAGGAG 59 53561016 53561034 AGTCTGGCCTTCAATTCGT 59 Novel Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 3 1 1 60 8 53831988 53832006 AGATCAGTGTTCCATGCCT 59 53832030 53837374 TCTCTGAAGTTGAGAGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029391.1 ENSRNOG00000058347 ENSRNOT00000083201 3 1 1 74 10 26258479 26261367 GTGTGCAGAGAAAGTTTCTC 57 26261401 26261422 ATATTAGTGGAGAGCTCATGAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07070161.4 ENSRNOG00000055224 ENSRNOT00000080908 3 1 1 82 8 55530126 55530258 ATATCCAGCTTAAGGCCTCG 60 55530063 55530081 AGATGTGGTGACTGTTCCA 59 Novel Rattus norvegicus 81 AABR07058174.1 ENSRNOG00000054723 ENSRNOT00000084323 1 1 1 115 7 103622203 103622908 TAACGGATTCATCCGGAGC 60 103622984 103623005 CAGTCAACCCTCATTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07070161.7 ENSRNOG00000060683 ENSRNOT00000081043 3 1 1 60 8 55539915 55539933 AGGTCCTCAGAGTTGAAGG 58 55538888 55538907 CATTCGAGGTCTACCTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029490.1 ENSRNOG00000052198 ENSRNOT00000089508 1 1 1 80 10 30626163 30627597 GGAGCTGTAAAGGTTGAATCC 59 30626103 30626124 TCTATCCAAGCATTAGAACTGC 58 Novel Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122 3 1 2 79 X 137478042 137478060 GAAATTGGTGATGGGCCTG 59 137473721 137473739 CTTGTCTTCAGTTCTCCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 2 1 2 60 X 149274231 149274251 AGAAAGTGAAAGAAGTGCTGG 59 149274270 149279793 TAATTTACCGTTGGGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058412.1 ENSRNOG00000054589 ENSRNOT00000082481 2 1 1 71 7 115117440 115117459 CTAAGACCACCTCTCCTCTC 58 115116798 115117406 CTGACCCACAGGAACAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07029617.1 ENSRNOG00000059529 ENSRNOT00000091350 1 1 1 80 10 41145701 41146328 CGTTTCCTATCTCAAGGTGG 58 41146371 41146389 AAGGTATGACAAGGAACGC 58 Novel Rattus norvegicus 81 AABR07042440.4 ENSRNOG00000061495 ENSRNOT00000084415 1 1 1 111 X 155803825 155803843 TCTAGAAGCAGTAGGGTGG 58 155803918 155805014 TTGGACAGAAAGGTCATGC 58 Novel Rattus norvegicus 81 AABR07042440.4 ENSRNOG00000061495 ENSRNOT00000084415 2 1 1 111 X 155803826 155803844 CTAGAAGCAGTAGGGTGGC 60 155803918 155805015 GTTGGACAGAAAGGTCATGC 60 Novel Rattus norvegicus 81 AABR07058554.1 ENSRNOG00000054112 ENSRNOT00000090656 3 1 1 62 7 124624945 124624965 CTGGGATCATCTGATATCTGG 57 124626608 124626626 GATCTCTGAGCCTCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070335.1 ENSRNOG00000053878 ENSRNOT00000085846 3 1 1 92 8 66066062 66066083 CTGCTTCCTTATCTGCTAATGG 59 66064556 66064577 GATGCCAAGCCAAATTATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027979.1 ENSRNOG00000053341 ENSRNOT00000082797 3 1 1 88 17 51949040 51980921 TGTCTTAGAGGCTTCAAACGT 60 51980970 51980989 GAAACTTCCACAACTGCTCC 60 Novel Rattus norvegicus 81 AABR07028036.1 ENSRNOG00000056249 ENSRNOT00000078898 1 1 1 94 17 54180928 54180946 ATATGGAACTGCTGGGTGG 60 54178574 54180876 CTAGAAGTATCTGTCAAGTGATGTC 59 Novel Rattus norvegicus 81 AABR07007863.1 ENSRNOG00000052924 ENSRNOT00000082365 3 1 1 66 2 31870512 31870530 GATGAATGACCAGGAACGA 57 31845301 31845319 TCAAGAACTTGCGTCTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 2 1 1 104 2 32297559 32297698 ATGCTTACTGCAGAACTGC 59 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07028092.1 ENSRNOG00000054941 ENSRNOT00000088096 3 1 1 87 17 56784470 56784488 CACAGTTTCCTGCTGAGAC 59 56782572 56784420 TGTAAATGAGTCTCCAGTGC 58 Novel Rattus norvegicus 81 AABR07007896.1 ENSRNOG00000056649 ENSRNOT00000079589 2 1 1 81 2 34006765 34006786 GGCACTAACATGATTAGATTGC 58 33995944 34006726 TCACATTTCTTTACCTCTCCTC 58 Novel Rattus norvegicus 81 AABR07008014.1 ENSRNOG00000053767 ENSRNOT00000082443 2 1 1 62 2 38913443 38913461 CAGGAGTTAAGAGGCTCAC 57 38909658 38909677 TAAAGAGACAACCTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059632.2 ENSRNOG00000052413 ENSRNOT00000078043 1 1 1 80 4 28270937 28271672 CAAATTCCGGTCTCAGAAGC 59 28270876 28270897 AAGCAACTCATTCTTCAAGAGG 59 Novel Rattus norvegicus 81 AABR07028511.1 ENSRNOG00000058351 ENSRNOT00000087046 3 1 1 80 17 73065549 73067554 CAAGCAAGCCTCCTAGGAG 60 73067595 73067616 GGTCCTTAGGATAGAAGCTCTG 60 Novel Rattus norvegicus 81 AABR07059641.1 ENSRNOG00000052257 ENSRNOT00000084091 2 1 1 80 4 29623276 29624097 TGTCAAAGATCAGGGCTCC 59 29623214 29623233 CTCTACCACATCTCCCTGAG 59 Novel Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 1 1 1 60 8 89236978 89236998 TCTTAGCACAGTATCCTCTGG 59 89235874 89236959 TTTCCACTGTCATTGTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044807.1 ENSRNOG00000060396 ENSRNOT00000077552 3 1 1 80 20 21497534 21497552 TGTCTTAGGAGTGAAAGCG 57 21497288 21497492 CAATAAATGCCTAAGCCTCAG 57 Novel Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 1 1 1 80 4 39637155 39637175 GCCTATGCATGAGGAATAACG 59 39637001 39637114 TAGGCTCACAGATGCTTGTC 60 Novel Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 1 1 1 109 20 23359615 23359633 GTGTCCAGACTCCACAGAC 60 23351322 23359542 TTTCCTGGACAGGTGTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071210.2 ENSRNOG00000054553 ENSRNOT00000082571 3 1 1 83 8 104913750 104913876 AAGTTTCCAGAAGACAAGCAC 59 104913921 104913939 CAGTCTGGGAGAGGAACTC 59 Novel Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 1 1 1 63 2 49857584 49857605 CTGAAGTGTTATGAACTCACAC 57 49857628 49908101 ATAATTTCACCATGTCCCGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059991.1 ENSRNOG00000057163 ENSRNOT00000089128 3 1 1 121 4 47942513 47942531 GATCAGACTGAAGCTGAGG 57 47937488 47942058 GCCTTTGCTTTCTGTATTTCTC 58 Novel Rattus norvegicus 81 AABR07071299.1 ENSRNOG00000058871 ENSRNOT00000088614 1 1 1 84 8 108470826 108470844 GGTGTGATGGGAAGGAGTC 60 108466723 108466741 GTTCACCAAATCGTGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060055.1 ENSRNOG00000055651 ENSRNOT00000078470 2 1 1 82 4 51738017 51738035 CAATGTGGTCGTGGATACG 59 51738080 51739317 GTCTGTCACCTTCTTGTCAC 59 Novel Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 2 1 1 100 8 114131946 114131964 ACATGAAGTGGCTGATCGA 59 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07071551.2 ENSRNOG00000060625 ENSRNOT00000083631 1 1 1 81 8 121702877 121703660 GATGCCATAATCTCTGGTCTG 58 121702816 121702834 ATTCACAATGTCACCGAGG 58 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 1 1 1 60 8 121730407 121730428 AGACGTACACATTCAAATCACC 59 121726289 121730386 AACTTCTGGATGGCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008597.1 ENSRNOG00000053100 ENSRNOT00000085017 3 1 1 99 2 66285632 66304335 GACTTATGGGACAGCATGG 58 66285551 66285570 CAATGCCATACTCAATTGGG 57 Novel Rattus norvegicus 81 AABR07060560.4 ENSRNOG00000057253 ENSRNOT00000083187 3 1 1 137 4 80811256 80849094 CAGGAATTCTCAAGTGTTTCTG 58 80811140 80811160 TCAATGTTCTTTCTCCTCTGG 58 Novel Rattus norvegicus 81 AABR07043877.1 ENSRNOG00000053551 ENSRNOT00000091533 1 1 1 60 19 45503977 45503996 TGAAGGATCTCCAAAGTCCC 59 45507270 45507291 TCTGAATCCATCAATAACCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043928.1 ENSRNOG00000053616 ENSRNOT00000086963 2 1 1 93 19 48220960 48222075 ACAATTTGTTGAGCCCTTCC 59 48220886 48220904 CTCCTTCCTTTCGGTTGGT 60 Novel Rattus norvegicus 81 AABR07008878.1 ENSRNOG00000051488 ENSRNOT00000080367 3 1 1 82 2 77113591 77113612 AATAGTAGACTCAGAAGGCTGC 60 77113655 77161525 TCCAAGGTTGGTGGAACTC 60 Novel Rattus norvegicus 81 AC096792.2 ENSRNOG00000055230 ENSRNOT00000079155 3 1 1 82 7 133241880 133252490 GTTCACCCAAGGTCTACCA 59 133252535 133252554 CGCTGATCTTCGTAGTAGCT 60 Novel Rattus norvegicus 81 AABR07071697.1 ENSRNOG00000059784 ENSRNOT00000090101 2 1 1 93 8 126966291 126966309 GAGGGAGAAGTGGAAAGCT 59 126966366 126969202 CATTGGTGCCCACATAGAC 59 Novel Rattus norvegicus 81 AABR07044001.3 ENSRNOG00000056389 ENSRNOT00000079701 2 1 1 173 19 52065972 52065990 GACCCAGAGTCCTTGACAG 59 52066125 52067119 GAGTACTGGTATCACCTTGGG 60 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 1 1 2 68 7 134985986 134988458 ATGATCTCTTCCCGTTGTG 57 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044063.2 ENSRNOG00000056401 ENSRNOT00000081448 2 1 1 81 19 54532219 54532238 GAGAAAGAGCAGTAGCAACG 59 54531293 54532177 GTTGTTTGAAGGTACCTGTCC 59 Novel Rattus norvegicus 81 AABR07071753.1 ENSRNOG00000060074 ENSRNOT00000083759 2 1 1 66 8 129440015 129440035 AGTATCTTGATGGCCTGTGAG 60 129439447 129439465 TTCTGGCCTGTTAACTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058786.1 ENSRNOG00000054027 ENSRNOT00000077802 2 1 1 100 7 137482048 137482066 TCTCCTGGCATCTTTAGGT 58 137480350 137481985 AATAAATGCACCTCCAAGGG 58 Novel Rattus norvegicus 81 AABR07044139.1 ENSRNOG00000057718 ENSRNOT00000086567 2 1 1 152 19 59408071 59408090 GGGAGGCAACATAAATGTGG 59 59408205 59408864 AATCTCACCGGAAGTCCTG 59 Novel Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 3 1 1 72 7 138150141 138150662 ACTCTCCATACACTGCAGG 59 138150087 138150108 CTGAAGGTGTAACTTGTCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058815.1 ENSRNOG00000055003 ENSRNOT00000077822 2 1 1 80 7 138414462 138424268 GCTCAGTTATGCTTGTTCAG 57 138414401 138414421 TAGCATTTGGAAGGAAGATGG 58 Novel Rattus norvegicus 81 AABR07009260.1 ENSRNOG00000053978 ENSRNOT00000086047 3 1 1 81 2 90606129 90606640 GGAAGAATGATTTGGAGATTGGG 60 90606678 90606699 GAGAAGTACAGCTGTAAACAGC 59 Novel Rattus norvegicus 81 AABR07010033.1 ENSRNOG00000053304 ENSRNOT00000077121 1 1 1 60 2 121570261 121570279 TGATAGAATGGCAGCTGTG 58 121570219 121570238 CCAAGCGACATGAAGTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 1 1 1 60 2 128381477 128381907 TAGCCCTCCTATACAGTTGC 59 128381929 128381948 CCTGATCTAGGACAGTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 2 1 1 116 2 142079489 142084822 GGTTCTTAGGAATTCCTGGTG 58 142079393 142079412 CTTAACCTCTGAGCTGTCTC 58 Novel Rattus norvegicus 81 AABR07011145.1 ENSRNOG00000059427 ENSRNOT00000078981 1 1 1 79 2 158978148 158978166 ATTGTCAACCACTTCCCAC 58 158963682 158978107 ACCTTTACTTTCTTGTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011512.1 ENSRNOG00000061049 ENSRNOT00000089194 3 1 1 121 2 162986972 162988715 TTTCTTTCGAGATTCCTCCAG 58 162988797 162988816 TTGGTAAATGACTTTGCCGA 58 Novel Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 2 1 1 161 2 177343807 177343825 ATACCTGGAGAGTTGGCAC 59 177343231 177343683 TTCTTTGTCTCAGGAATCCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07012051.2 ENSRNOG00000057323 ENSRNOT00000087787 1 1 1 81 2 183913600 183914888 TCAGCATACCAAAGCCTCC 60 183913537 183913555 CCTCCAGGTGACTGATGTC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 2 1 1 91 2 184916591 184916844 CTTGTGTCATGTGGACCTC 58 184916518 184916536 TATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012613.1 ENSRNOG00000058608 ENSRNOT00000086269 1 1 1 82 2 199439400 199439418 GAGTCTTTCCTGGGAAGCT 59 199433087 199439354 GTGGGTGACTGGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07012702.1 ENSRNOG00000055403 ENSRNOT00000089188 3 1 1 80 2 202664292 202665805 TAAGGATGCTAGGTCTGCT 58 202664230 202664248 TCTTCTCTGGGACATTCCT 57 Novel Rattus norvegicus 81 AABR07014161.1 ENSRNOG00000052143 ENSRNOT00000091056 3 1 1 81 14 4064523 4064542 TGCTCCTCCATAGATCATGC 60 4064583 4064744 TTGTCTTTGGATCCTGAGTAGG 60 Novel Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 3 2 2 84 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647895 211647915 TGTTTAACTGCTTCATGCCTG 60 Novel Rattus norvegicus 81 AABR07012943.1 ENSRNOG00000057573 ENSRNOT00000091861 2 1 1 81 2 216061623 216062300 ACTCAACTGTCTGCATAACTC 58 216062340 216062361 CTACAGCAGTTCAAAGAAAGTG 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 2 1 1 77 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143213 225143954 TTTAGGTGAGGAAAGGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013746.1 ENSRNOG00000059921 ENSRNOT00000082882 2 1 1 91 2 254228390 254249402 CTACTCATGTAGTATTGCTATGAGG 59 254249451 254249469 GTTCTCAAGGAGCGAAGTC 58 Novel Rattus norvegicus 81 AABR07013914.1 ENSRNOG00000058005 ENSRNOT00000077348 3 1 1 85 2 262799848 262803677 CCTGATAGGTGAACTACAACAG 58 262803722 262803741 CAAACAGGTGACTGTCACTC 59 Novel Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786 3 1 2 82 X 22369777 22399617 GATACCCAGAACATCCACC 57 22369713 22369732 AGATACTTCTGATGAGCCCT 58 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 3 1 2 108 7 115830356 115830374 CACTCACTACGGACTCTCC 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041737 ENSRNOT00000063490 3 1 1 60 1 70440761 70440781 TGATTAGTTCTTGGATGGGAG 57 70440721 70440743 CTACATCAGTAGATCCCTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014242.1 ENSRNOG00000051404 ENSRNOT00000057117 3 1 1 60 14 5868862 5868882 CTTAAGATAGAGTGTGGGCCT 59 5868822 5868843 TTGTTACAAATCTCACAGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 1 1 1 80 X 53046034 53046056 AGATTTCACCTCACATGCG 58 53046099 53046118 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 2 1 1 80 X 53046033 53046056 GAGATTTCACCTCACATGCG 59 53046098 53046117 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056355 ENSRNOT00000077921 3 1 1 74 4 70504088 70504108 ATTGTTCACTTAACTGGTGGG 59 70504141 70504162 CAATGGTTACATCAAGAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053399 ENSRNOT00000087208 2 1 1 60 1 271059378 271059400 CGATACAGAGAAGATTAGCATGG 59 271059340 271059358 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000074856 3 1 5 80 6 114783591 114791352 CCAAATAAAGATAGTACCCGAGTG 59 114783534 114783554 TTTGAAATCCTCTAGCAGGCT 60 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 3 1 5 80 6 115018649 115018674 CTAAGAATACAGAGTCTGAAGGAG 58 115001662 115001681 CATCCTCCTTAAGTGCTCCT 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000056556 3 1 2 82 7 116560030 116561002 GTGTGCAGAAAGAGCTCAG 59 116559966 116559984 AGGTAGCAGTTGATGAGCA 59 Novel Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 2 1 1 85 2 198601737 198601755 AAGAGCTCAGAGCAAACCA 59 198601805 198601823 CTGTGGTAAGGAATCCGGG 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 3 2 2 80 9 4269287 4269306 ACAACTGGAGTCAGATTCAG 57 4269348 4269715 ATGTTGTCCCTGATTTAGGG 57 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4097393 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 1 1 1 69 2 221659319 221659337 TAAGGTGTTCCTTGGAGCC 59 221659371 221659389 GAGTTCTCGAGTCTCTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059528 ENSRNOT00000078613 1 1 1 60 3 165570769 165570790 AACGATACAGAGATTAGCATGG 58 165570730 165570748 AACACTTCAGGATTTCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135026.1 ENSRNOG00000054620 ENSRNOT00000083884 1 1 1 113 1 48880210 48891017 AAAGAATGGAGGATGTATGCAC 59 48880118 48880136 TCAAACCAGTGATCACCCA 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 3 2 3 80 13 75164267 75164286 ATCTCTGACCCTTTCTGGTC 59 75164325 75167549 ATAAGAGCCTTCATCCTCTAGTG 59 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000083678 1 1 3 80 5 164954160 164954178 TTTGGATAAGGAACACCGC 58 164954220 164954883 GAGTCTGAATTGATGGACAGC 59 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000084723 3 1 3 103 20 3367401 3368495 CTTTACCGGACCTTTGATGC 59 3368643 3368662 GTTGATGGTGAGTGTGAAGG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000057902 ENSRNOT00000090295 2 1 1 60 1 194743846 194743867 GGAAGTAGGAGTTGGAATAGGA 59 194743807 194743826 TGCAATACTAGGTCGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000004278 3 1 2 82 X 72075658 72075677 AGGTGAATGACACCATTCAG 58 72074838 72075613 CATACACAGGTTCCCAGTG 58 Novel Rattus norvegicus 81 AABR07068221.1 ENSRNOG00000048180 ENSRNOT00000035085 1 1 1 104 9 91063582 91063605 TGTTACTAAAGATGCATGTGGG 59 91063499 91063517 CATACCCAAGCACCATTGG 59 Novel Rattus norvegicus 81 AABR07012039.1 ENSRNOG00000061763 ENSRNOT00000081080 3 1 1 86 2 183250819 183250888 CGTTTATAGAAGATGATTGGGAAGG 60 183250757 183250775 TGCTTTCTCCACTGTCCTC 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968 3 1 4 98 9 88253750 88253768 CCTCCAGGTAAGCTCTTGG 60 88246708 88253688 AGGTTCACCTTCTGGACTG 59 Novel Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 3 2 2 102 2 208383487 208545141 CTTTCACCTGGCACTTCAG 59 208550239 208550260 GTACACAAACGATCAGAATGGA 59 Novel Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 2 1 1 67 1 169095042 169095060 CAAGAGGAGCAGATCCGAG 60 169095092 169095110 GGCACAAAGAACACAAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 3 1 1 69 1 169095069 169095089 ACATGTACTTCACATCTGTGC 59 169095121 169095139 AGCGGTGTACAAGAGACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 1 1 2 80 4 113982397 113983037 CTCATCAACAAGGAGACTAGG 58 113983079 113983097 GTTGCTGATACTGAGGGTG 58 Novel Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 2 1 1 64 3 79151577 79151595 TATTCAAGCTTGCCTGCAC 59 79151529 79151547 GATTAGACCACTGTTGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC133273.1 ENSRNOG00000002486 ENSRNOT00000003363 1 1 1 70 10 34593466 34593484 TATTCTGAGAGCAAGGGCA 58 34593520 34593538 ATCAGAGGGTTGAGCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000068577 2 1 2 128 10 11879764 11880326 GAAACACAGCTTCCAGTTCC 60 11880417 11880435 ACAAGGGACACATGGTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060400 ENSRNOT00000085105 1 1 1 60 5 88341896 88341914 TTGCTGTGCTACACAAGTG 59 88341854 88341874 CACTTGAGTGTAGATGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 3 1 1 60 11 36589479 36589497 TCTCAACAGTTCGCTTAGG 57 36589520 36589539 TCCCTTGTTATTGTGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056973 ENSRNOT00000078426 3 1 1 60 3 4094133 4094151 AGAGGCTATGTCTACGCTC 58 4094091 4094111 GTCAGGCTACAAATCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.3 ENSRNOG00000053486 ENSRNOT00000090713 3 1 1 87 4 114764489 114764654 GATTCAGCCTGAGATGCTG 58 114764705 114764723 CTGGTTCAGGAGGTCTCTG 59 Novel Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076399 2 1 2 147 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31265858 31272602 CTCATTCACCTCTTTCTGACG 59 Novel InUTR Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 3 1 1 60 8 53903705 53903725 ACTGCCAGGATCTATCTATGG 59 53903747 53903767 GGGAATTCCTTTGAAATTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 1 1 1 64 3 154986150 154986169 TGATGATCGTCTGGTTACAC 58 154988844 154988865 GCATAAATCCGAATCATCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 1 3 4 103 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 3 2 2 81 20 4543431 4543603 ACCTGTAAAGACCATGAGAC 57 4543369 4543387 TCATTCTGTTCCCGTTCAG 58 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000065044 2 1 2 114 20 4559407 4560662 CTGCAAACCTGTTCGATGTC 60 4559312 4559330 GAAACCATGCTCACACTCG 59 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 1 1 1 75 9 43488583 43488602 TGCCTGGTATCTTGTTTCTG 58 43488522 43488541 AGTCAAACTTCCTCTGTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 1 1 1 76 5 58031738 58031758 GATAGCATCAAATGGCTTCTG 58 58022462 58022480 CATGATGCAGGACTTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 1 2 3 86 1 19639163 19639280 CATTGATGTATCTGCAACTGC 58 19639097 19639116 TCGTTGATGTTCTGGATGTC 58 Novel Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 3 2 2 118 10 88568176 88568195 CAACATCCAGCTGAACTCTG 59 88567742 88568095 GTATGGAATACCCTGGCCC 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 3 1 1 61 14 93085263 93085281 CAGAAGTCCATGGAACCTG 58 93086750 93086769 CTAGTTGCAGGATTCCATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 2 2 2 94 10 93159184 93159764 TCTCCAAGGTGGTAAAGTCG 60 93159819 93159839 GCTTCAGATCTTGAAGTTCCG 59 Novel Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 3 1 1 67 4 171959380 171959399 TAGACATCAGCAAGTACCCA 58 171960447 171960465 AATCGTTTATGGTCGCCGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 2 1 1 67 18 21111560 21111579 CTGTGACAGACGTCTTACTG 58 21113406 21113429 CTGGTTCTTCAACAACTCTAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 2 2 2 81 5 142406975 142406993 GCCATACAGACATCACCGT 60 142405994 142406931 ATGTGCTGGTCTGTGATAGG 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 1 1 1 60 1 64235371 64235389 CGTCACTAAGCAGACACAG 58 64236954 64236975 CTTTGACCAATGATTCATGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 1 1 1 60 6 97206216 97206235 GACCATGGATTAAGCAACAC 57 97205293 97205311 CTACAGAGGGAGGGATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058 1 1 2 92 6 119129184 119137133 TCTGTGATTGCTGTCGGAG 60 119137189 119137207 ATTGGAGTGAGGGAAAGGC 60 Novel Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 2 1 1 60 13 65747803 65747824 AATCCTGACTTCATGTTCAGAG 58 65750231 65750251 TAGGTAGCTCTATGAGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 2 1 1 63 3 53506043 53506061 GAAATGTCAATCCGCTGGT 59 53444348 53444366 CATCCCTGATTGCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 1 1 1 60 3 93435922 93435940 TGAGTGGTGAGGAAAGAGG 59 93436794 93436812 CTCAGGCCAAGTAGACACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 2 1 1 60 3 93435923 93435941 GAGTGGTGAGGAAAGAGGA 58 93436795 93436813 TCTCAGGCCAAGTAGACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537 2 1 2 80 3 108640508 108640528 CCGTCGTTCATTCTTTAAGCA 59 108640273 108640468 TTCATTTGCTTCCTGACATGC 60 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 3 2 2 89 12 22369855 22369876 TGGCTTTGTGTTCAATAAGGAC 60 22369925 22370341 TTCTTACCTGCCGGAATGAG 60 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 1 1 1 62 12 28150434 28150452 TCTCACAGAGGGATTGCAG 59 28145651 28145669 TGCCATCTCTGTTCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 1 2 2 80 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146061 26146079 TTCTGGTGCATTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000077575 3 1 3 149 8 5173952 5175613 CAGCAGTATGAAGAAGATACCAG 59 5171955 5171973 GCTTTGCAAGACTCATGGA 59 Novel Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 1 1 1 71 7 36160484 36160502 ATTCCAGAAACTGCTCCCT 59 36164774 36164792 ATATGGTCATGTGGATCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 1 1 1 60 1 273969826 273969844 CGATTTCAGGGACACTAGG 57 273968416 273968434 GTGACTGCTAATGCAGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 2 2 2 80 10 196627 197043 AGTGGATTCAGGAACGAGG 59 196565 196585 TCCAGAAGATGTCAGTCATCC 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 99 19 38370078 38385840 GTTCCATTGTGATGATATGGC 58 38366099 38370017 CTTTGCTGACACCACTCTC 59 Novel Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 3 2 2 80 X 113550887 113550906 CCTGCAAACAACTATGGGTG 60 113550948 113581954 CTGAGGAGGTGTCTTTCCAG 60 Novel Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 1 1 1 60 10 16236010 16236029 GGAAGAAAGATACGTTGGGA 57 16236412 16236433 TCCGTCTTCTTTCTATCTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 1 1 1 61 8 84681119 84681137 GAAGAAGTGGACCATCAGC 58 84671541 84671559 AGTGGCACCATCAGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 3 1 1 60 19 61789227 61789247 TCTGGCTCCAGTAAACAAGAG 60 61784878 61784899 CTTTCTTGGCTACATTTCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 2 1 1 85 2 102164297 102164316 CTTAACTGCTGAGCCATCTC 59 102154154 102154173 TCAATAAGCCAGATCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 3 1 1 75 1 281314664 281314683 AAATGGAAGTTACCCAGCCA 60 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 3 1 1 60 14 3993504 3993524 GGAGGATTTACTGATGGTTCC 58 3983287 3983305 GAGAAGCATCCTGTTAGGG 57 Novel DesignNoJunction Rattus norvegicus 81 Hspa4l ENSRNOG00000010819 ENSRNOT00000015474 3 1 1 81 2 127632192 127634606 CAGCTAAGAGCCAGATAGTC 57 127634648 127634668 GGATCATCAAATGATCGTCCA 58 NA Rattus norvegicus 81 Kprp ENSRNOG00000028865 ENSRNOT00000042142 3 1 1 60 2 193133142 193133160 CCATTCATTGTCCCAGTCC 58 193133100 193133119 CCTAGTTCTTGGCTGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552128 ENSRNOG00000050724 ENSRNOT00000056486 1 1 1 165 2 193007795 193007813 TGTGTCTTCCTGCTGTAGC 60 193007648 193007666 ACAGCATCCAGAGCTATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rs1 ENSRNOG00000030434 ENSRNOT00000040912 2 1 1 80 X 35753310 35761808 CTTAGACTGTATTCCAGAATGCC 59 35753252 35753272 CAAGTGATCTGATCTGGTGTG 59 NA Rattus norvegicus 81 Rxfp3 ENSRNOG00000023126 ENSRNOT00000031693 1 1 1 60 2 61007415 61007433 TGATGAAGAGCAAACAGGG 58 61007373 61007392 GCCAGGTTAGTGACAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 1 2 2 80 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856013 150856032 CAGGATGAGCAAATCGACAG 59 NA Rattus norvegicus 81 Tmem27 ENSRNOG00000003960 ENSRNOT00000005348 3 1 1 80 X 32148942 32148965 GAATATCTCTTCAGAGCAATGGTG 60 32139389 32148904 CAGGACGTGGGAAATTTCTG 59 NA Rattus norvegicus 81 LOC680190 ENSRNOG00000047829 ENSRNOT00000051551 3 1 1 60 X 43781373 43781393 GCAACAACAGATTATGTCACC 58 43781333 43781354 CGAATATACAAAGGAACGAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2ac ENSRNOG00000030736 ENSRNOT00000051917 2 1 1 65 2 198360438 198360456 AAGAAGACCCGCATCATCC 60 198360391 198360410 CTTGTTGAGTTCTTCGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 1 2 3 80 15 35032727 35032746 TCATCTGTGGTGGGTTTCTC 60 35032786 35033324 GGATGACTGTGATTTCTCTTCC 59 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 3 2 2 80 8 117289176 117289299 AGTTTCCAGTTCGGAACCT 59 117289341 117289361 CATACAGGTCATAGCTAGGCA 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 2 2 2 80 5 171629708 171630172 GTAAGGTCAAGTCCCTCCC 59 171629646 171629665 TGGATTCTTCCAAGAGGAGG 59 NA Rattus norvegicus 81 Siae ENSRNOG00000031266 ENSRNOT00000044293 2 1 1 80 8 40096878 40096896 TCAGCCTGAGATAAAGCCC 59 40096940 40098320 TCACATGGGACAAACCTCC 60 NA Rattus norvegicus 81 AABR07037166.1 ENSRNOG00000059740 ENSRNOT00000087609 2 1 1 60 X 14783513 14783533 GTCTACTTTGACCGTGATGAC 59 14783473 14783492 ACTTGCTCAAGAAGAAACGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc1b ENSRNOG00000010701 ENSRNOT00000014270 2 1 1 80 2 40040835 40041887 TACGACGTTGTCACATTTACAG 59 40041926 40041946 TTGGAGTTGACAAGCTTTGTG 60 NA Rattus norvegicus 81 Tssk1b ENSRNOG00000032856 ENSRNOT00000052200 2 1 1 60 11 87240245 87240263 TGTCTGACTTTGGCTTCTC 57 87240203 87240221 CTTAATGTCAGCCGACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3583 ENSRNOG00000049006 ENSRNOT00000074381 1 1 1 60 5 150732630 150732649 AGATCACGTTCATGAAGTGC 59 150732667 150732690 CAAGATAGACAACTGCATGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med8 ENSRNOG00000028477 ENSRNOT00000067237 2 1 1 61 5 137243340 137243598 TTCTAGAAGTCCATTCTAGGGA 58 137243619 137243638 GAAGCTGACTTGATGTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843,ENSRNOT00000087293,ENSRNOT00000005328 1 4 5 85 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443983 26444271 ATAGGAAGGATACGGCTGC 59 NA Rattus norvegicus 81 Rn60_1_1340.1 ENSRNOG00000051108 ENSRNOT00000077007 2 1 1 60 1 132891973 132891992 CATCGGCTGGCTAATAAAGG 59 132892015 132892033 CTTAGGCTTCACATGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk1a ENSRNOG00000001662 ENSRNOT00000050342 3 1 1 84 11 34922328 34926987 ACTAACCAGGTGATGCCTG 59 34927035 34927053 TTCTCAGAGGAGCAGTTGC 60 NA Rattus norvegicus 81 Fam163b ENSRNOG00000006591 ENSRNOT00000008660 1 1 1 80 3 5658589 5661548 ACTGTCGACTCCAGTATTACTG 59 5658530 5658548 GAGAATGCACAGCGAAGTC 59 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 2 2 2 82 3 110554833 110554853 ACTCACTTGGTACTTTCAGCA 60 110554689 110554790 TACTATCCGTTTGGCCTTGG 60 NA Rattus norvegicus 81 Zfp300 ENSRNOG00000046469 ENSRNOT00000072087 2 1 1 85 X 908564 909170 AAATTGCACAGAAGATGGGC 60 909216 909236 CGGATATAGTCTGTTCCAGGG 60 NA Rattus norvegicus 81 Zdhhc24 ENSRNOG00000019825 ENSRNOT00000026832 2 1 1 115 1 220137477 220137496 TATCAGCTGCTCAATCTGCT 59 220137574 220138696 TGGTAACAGTAAGCCCAGC 60 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 1 2 2 80 2 123806483 123806504 ACAGAACATCAACCTTTACCTC 58 123806543 123808094 GGATTAAGGCGTAACTGTGAC 59 NA Rattus norvegicus 81 RGD1566387 ENSRNOG00000013698 ENSRNOT00000018322 2 1 1 60 X 122314226 122314246 AACAAACCGTAAAGGAAGGAG 59 122314267 122314286 CATTTATCATAGCCAGCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr232 ENSRNOG00000049748 ENSRNOT00000047839 2 1 1 60 1 171196511 171196533 CTTATTTCTGGGCATCTATCTGG 59 171196473 171196494 AACAAGGAACATGAGAAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686143 ENSRNOG00000023511 ENSRNOT00000032698 3 1 1 80 2 193184755 193184773 GATACTCAGCTGCAGTTCC 58 193184663 193184711 CTGGACATTTCACGTAGGT 57 NA Rattus norvegicus 81 Gpr15 ENSRNOG00000039680 ENSRNOT00000002258 3 1 1 84 11 44002947 44002965 CAACGCAACTTCAGGTCTC 59 44003010 44003178 CAAAGCTATGACAGATGAAGGC 60 NA InUTR Rattus norvegicus 81 AABR07037395.2 ENSRNOG00000052559 ENSRNOT00000075010 1 1 1 60 X 19855219 19855240 CTTCACCAACAGAATACAAGAG 57 19855258 19855279 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 1 2 2 80 1 282572316 282572334 GCCTCAGACTCAGAAGCTC 60 282572375 282572672 CTTGAAGACCTGGTTAATAGCC 59 NA Rattus norvegicus 81 Trmt44 ENSRNOG00000008898 ENSRNOT00000011824 2 1 1 80 14 80365538 80365556 GTTTGGCCTGAAGTAACCG 59 80365599 80366507 TTCCCATAGGATCAACAGGT 58 NA Rattus norvegicus 81 Fgg ENSRNOG00000025074 ENSRNOT00000034521 2 1 1 81 2 181993711 181993735 GAAGATAATTCCCTTCAACAGACTC 60 181993773 181994324 CATGTCTCCAACCTGTTTGG 59 NA Rattus norvegicus 81 AABR07054514.1 ENSRNOG00000052231 ENSRNOT00000071502 1 1 1 60 3 158847731 158847751 TATTTCTGTGATCTCCTCCCT 58 158847771 158847791 CCTTATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubtd1 ENSRNOG00000013813 ENSRNOT00000018485 2 1 1 153 1 261278079 261278097 GATGAGTTCTGGGACACAG 58 261278214 261279490 AAAGAGTTCCATGAGGCAG 57 NA Rattus norvegicus 81 Rorc ENSRNOG00000020836 ENSRNOT00000067042 3 1 1 81 2 195627281 195628423 CAGAGATGCTGTCAAGTTCG 59 195628467 195628485 CTGTTGCAGTTGTTTCTGC 58 NA Rattus norvegicus 81 Rn60_2_0072.1 ENSRNOG00000050870 ENSRNOT00000074476 3 1 1 60 2 7230868 7230886 GAATTTCGGGAAGGAGGAC 58 7230826 7230847 CTATTCGTGGCTGATATTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165,ENSRNOT00000067331 3 2 2 81 5 27994537 27994556 TTTGGTCCTGAATTGCAGTG 59 27990842 27994495 CTTGCAATCAAGGTAGAGCTC 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 2 2 2 80 2 183529494 183534332 AACACATATAAGTGTACTCGGC 58 183529435 183529453 AGCTTCAAGTTCAAGGTCC 58 NA Rattus norvegicus 81 LOC365238 ENSRNOG00000015168 ENSRNOT00000020345 2 1 1 115 1 94781069 94782429 ACTACAGACTCAGGAATTGTG 58 94780974 94780992 GTATGCCTCCATAGTGCTC 58 NA InUTR Rattus norvegicus 81 LOC100911361 ENSRNOG00000051193 ENSRNOT00000076198 1 1 1 60 2 121130608 121130626 CACGATCCAAAGGAACCAG 59 121130566 121130584 TTTCAAAGCTCAGACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911107 ENSRNOG00000048576 ENSRNOT00000074842 2 1 1 80 17 32073154 32073175 AGATACTTCTCCCTGAGAATGG 59 32072573 32073115 ACAGGACTCCTTAAAGGTAGG 59 NA Rattus norvegicus 81 RGD1306233 ENSRNOG00000010152 ENSRNOT00000013473 3 1 1 80 3 7051793 7051811 CGACTACTACCGCATTAGC 58 7050992 7051750 GCTTCATTGGTACTGTAGCC 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 2 2 2 93 X 31130159 31130177 TGCAAACTCTTGGAAGGCT 60 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Arl13b ENSRNOG00000047194 ENSRNOT00000074108 2 1 1 80 7 1131950 1132981 GTCAGAACCAGGTGATAACAG 59 1131890 1131910 GTATTGACTGGTTCTACCCGA 59 NA Rattus norvegicus 81 AABR07013931.2 ENSRNOG00000053997 ENSRNOT00000082326 3 1 1 61 2 264180146 264180164 AAGCAATGGACATCCAAGC 59 264180187 264180207 GTTCTTCTCTGGTCTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab43 ENSRNOG00000037768 ENSRNOT00000013299 2 1 1 97 4 119697260 119697279 AAGAGGAGCACCTTCTTGTC 60 119695469 119697201 TCTGACTTGTTCCCGATCAG 60 NA Rattus norvegicus 81 Olr348 ENSRNOG00000058503 ENSRNOT00000085941 3 1 1 60 1 229889958 229889979 ATCTGTCTTTAGTGGACTTCTG 58 229889997 229890018 AATCCAGCTATGACATTTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220,ENSRNOT00000002719 1 2 2 80 11 51060462 51060480 ATCCCATCCTGTTTCCCTG 59 51057586 51060420 TGACCATTATCACAAGACCGA 59 NA Rattus norvegicus 81 LOC100911944 ENSRNOG00000050764 ENSRNOT00000073085 3 1 1 60 8 18051066 18051086 ATTGGACTGACATATGCTCCT 59 18051026 18051046 ATATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slamf9 ENSRNOG00000008045 ENSRNOT00000010594 1 1 1 80 13 90838488 90839049 TGCTTCATGAAGCCAAAGG 59 90838426 90838445 GGTTGACAGACTCTTGAAGG 58 NA Rattus norvegicus 81 Slamf9 ENSRNOG00000008045 ENSRNOT00000010594 2 1 1 80 13 90838487 90839048 GCTTCATGAAGCCAAAGGG 60 90838425 90838445 AGGTTGACAGACTCTTGAAGG 60 NA Rattus norvegicus 81 Nrep ENSRNOG00000020467 ENSRNOT00000027739 1 1 1 80 18 26189838 26189856 CCAGAACTCTTGGTCTGGG 60 26185540 26189798 AGGAAGTCTTCCCTTAGTAAGAC 59 NA Rattus norvegicus 81 Nrep ENSRNOG00000020467 ENSRNOT00000027739 3 1 1 80 18 26189840 26189859 TACCCAGAACTCTTGGTCTG 59 26185543 26189801 AAGTCTTCCCTTAGTAAGACCTC 59 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 3 3 3 80 9 8158118 8160743 TGGAACATACAACCACTGC 58 8160787 8160805 AAGATAATGGCTGCCACTG 58 NA Rattus norvegicus 81 Mageb7 ENSRNOG00000042751 ENSRNOT00000065450 2 1 1 60 X 54939245 54939269 GATCTACTTAAACAACTACTGTGCC 60 54939209 54939230 TAACATATTCAGGAAGTGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 1 1 1 90 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524333 28524351 CATATCAGGGAGCTGCCTC 60 NA InUTR Rattus norvegicus 81 Olr1254 ENSRNOG00000050688 ENSRNOT00000052324 2 1 1 60 8 42381827 42381847 CTGAATTCTCACCTTCACACC 59 42381787 42381811 GGTCTACAAAGGACAAGTTAAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcna7 ENSRNOG00000020779 ENSRNOT00000028189 1 1 1 175 1 101398795 101398813 GTCATCCTGGTCTCCATCG 60 101400853 101400871 AATGGATCGTTGAAGGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r12 ENSRNOG00000055538 ENSRNOT00000078350 2 1 1 60 1 60406685 60406704 TGGTCTGGAATTTCAATGGT 57 60406644 60406662 AGATGTGTTGAACCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fshr ENSRNOG00000016783 ENSRNOT00000022802 3 1 1 81 6 12895669 12997610 GAACGCCATTGAACTGAGG 59 12895606 12895625 CTCCAGGTCTCCAAATCCAG 60 NA Rattus norvegicus 81 Mzb1 ENSRNOG00000022009 ENSRNOT00000036301 2 1 1 81 18 28437583 28437601 AGGAGCTGAGTGAATCCAC 59 28437202 28437540 ACTTCTTGGACTCCATAGGAC 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 3 2 2 80 1 32224225 32224998 CTCAACAGAACAGGATTTGTG 58 32225039 32225058 AATATTCAAAGTCTGCCGGT 58 NA Rattus norvegicus 81 Slc25a18 ENSRNOG00000042731 ENSRNOT00000015560 1 1 1 84 4 153349079 153349097 GACTCGAATCCAGACCCTC 59 153349145 153349592 CTGGGTCCAGAGTTTCCTG 60 NA Rattus norvegicus 81 Git2 ENSRNOG00000001190 ENSRNOT00000045946 3 1 1 80 12 47627101 47627120 CGCAAGACTGAACAGATCAC 59 47627163 47629449 GGGAATGTAGCTGTCATGC 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 3 2 2 82 18 28871730 28871750 TCCTATCGATGGTTCAAGGAC 59 28864786 28871686 GAGTTCTTTCTGCCGTTGC 60 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 1 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316595 22316613 TCGATCTTCAAACTGTGCC 58 NA Rattus norvegicus 81 AABR07053188.1 ENSRNOG00000031694 ENSRNOT00000041291 1 1 1 60 3 95939357 95939377 TTTATGCCCGAGATGAAACTG 59 95939397 95939417 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss1 ENSRNOG00000032156 ENSRNOT00000040403 1 1 1 102 4 70778235 70778646 CAATGGTGTGAACAACCCAG 60 70778711 70778729 CATGCTGCTGGTGATTTCC 60 NA Rattus norvegicus 81 Fam168a ENSRNOG00000018873 ENSRNOT00000025827 2 1 1 80 1 165854236 165859820 TGCTCCAGAATTTCAGTTCCT 60 165865016 165865035 CAGGAAGAGGAGTTCTGTGG 60 NA Rattus norvegicus 81 Ninj2 ENSRNOG00000010282 ENSRNOT00000013721 1 1 1 80 4 152631349 152731271 TCATCCACCTTCAACACAG 57 152731314 152731333 TCTTCTTGGTGGCATAATGG 58 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000036996 1 1 2 80 6 55700057 55700076 TCCCAGTATAACCTCTACCG 58 55698773 55700014 CGCTGTAATTTCCTTCCGA 58 NA Rattus norvegicus 81 Actl11 ENSRNOG00000032642 ENSRNOT00000047309 3 1 1 60 8 116709862 116709882 AGCTGATACCCAGATAGTGTC 59 116709903 116709922 CTGGTTATTGATGCCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pml ENSRNOG00000008400 ENSRNOT00000043434 2 1 1 81 8 63031841 63031859 ATTCCTCGACAGTACTCGC 59 63020590 63031797 GCAGTAGATGTTAGTCTGCG 59 NA Rattus norvegicus 81 Plcb2 ENSRNOG00000058337 ENSRNOT00000078037 1 1 1 80 3 110507825 110508053 TATCTTGTTCAAGGAAGCAGTC 59 110507766 110507785 TCAAATGACAGGATGACAGG 58 NA Rattus norvegicus 81 Slc25a28 ENSRNOG00000016751 ENSRNOT00000022633 1 1 1 96 1 263422028 263423144 ATATTGCCAATGGTGCAGC 59 263420850 263420868 TTGTACATCTGCATCCGCT 60 NA Rattus norvegicus 81 Rn60_7_0063.2 ENSRNOG00000059341 ENSRNOT00000081851 1 1 1 60 7 6165359 6165379 TTACATCTGCTTGTATCCCTC 57 6165401 6165419 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990,ENSRNOT00000028763 2 2 2 80 1 222534887 222534905 AGGATGACGAGCTAAAGCC 60 222534741 222534845 CCATTGACACCATCAACTCTG 59 NA Rattus norvegicus 81 Grem1 ENSRNOG00000026053 ENSRNOT00000037895 2 1 1 136 3 105206969 105214860 AGGTGACAGAATGAATCGCA 60 105206852 105206870 CATTGTGCTGAGCCTTGTC 60 NA InUTR Rattus norvegicus 81 Dagla ENSRNOG00000027264 ENSRNOT00000037624 3 1 1 80 1 226302867 226302887 ATGAGGTGATCATCTCACCAG 59 226302331 226302826 TCTCCAGCACCTTATTGAGC 60 NA Rattus norvegicus 81 LOC100909911 ENSRNOG00000029341 ENSRNOT00000042264 3 1 1 60 12 40685997 40686016 TCGTTTCCAGATGAGAATCC 57 40685956 40685976 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip3 ENSRNOG00000001956 ENSRNOT00000002678 3 1 1 80 11 54463830 54463849 GGCTGCTGTAGATAGTTGGA 59 54463890 54465261 TGTTCATTGTACTGTGTCCTG 58 NA Rattus norvegicus 81 Rn60_X_0625.1 ENSRNOG00000051030 ENSRNOT00000076040 3 1 1 60 X 61839554 61839572 GTCCAGCATAGTCTTGCCT 60 61839592 61839614 GGAATATAGGGAAAGGGAAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 3 2 2 123 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079889 111079908 CAGAAAGACATCGGTATCCG 58 NA Rattus norvegicus 81 Tmem120a ENSRNOG00000001441 ENSRNOT00000001960 1 1 1 80 12 23989987 23991681 GGTATCCAGGAAACACATCG 59 23991719 23991742 GATAGAGTTTGTACAGTTGTCCTG 59 NA Rattus norvegicus 81 LOC100911800 ENSRNOG00000045908 ENSRNOT00000065330 3 1 1 176 20 5283090 5283200 TCACTGGGAAATGCAGGAG 60 5282932 5282951 ACCTCCACAGTTACTCACAG 59 NA InUTR Rattus norvegicus 81 Bivm ENSRNOG00000022894 ENSRNOT00000033133 3 1 1 80 9 50899575 50899593 GACTTCGTGTGGTATCTCC 57 50899637 50900143 ATAGGTGGGAGATTCCCAG 58 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000029244 1 1 2 82 1 144601246 144601264 AAGCCCTAAGGAGAAGGAC 58 144596261 144601200 GATAATCTGACCCGCAGGT 59 NA InUTR Rattus norvegicus 81 Ankef1 ENSRNOG00000005792 ENSRNOT00000007893 2 1 1 80 3 129512314 129513387 GCTATCAACACATCCACAGG 59 129513427 129513448 CAATATGCCTCGAACTAGTTCC 59 NA Rattus norvegicus 81 Rn60_X_0616.1 ENSRNOG00000038235 ENSRNOT00000041226 1 1 1 60 X 60953713 60953734 CAGCCATGTTCCATCATAAGAC 60 60953755 60953773 CTTTCGCTCATGTCCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd10 ENSRNOG00000054334 ENSRNOT00000091756 1 1 1 80 11 60060471 60060951 GACCACAGATACTGGTTGGA 59 60060994 60061012 CTATGACCTTCTCTGGCCG 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 3 2 2 80 1 89538039 89538057 GAGACCCTACTATCGACGA 57 89535302 89537996 GGATGTATTCTGTGAGAGGC 58 NA Rattus norvegicus 81 Hgf ENSRNOG00000007027 ENSRNOT00000009763 2 1 1 80 4 15458504 15458523 CACTGATCCAAACATCCGAG 59 15453842 15458463 CCACGATAACAATCTTGTCCA 59 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396,ENSRNOT00000091934 3 2 2 80 4 145246762 145248328 ATGGAGACTATGACAGAACAG 57 145248632 145248650 TGAACTCACCGATGAAGTC 57 NA Rattus norvegicus 81 Mir433 ENSRNOG00000036497 ENSRNOT00000054605 1 1 1 60 6 133712349 133712370 GTGAGCCTGTCATTATTCAGAG 59 133712390 133712409 AGCCCATCATGATCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knstrn ENSRNOG00000009334 ENSRNOT00000012454 1 1 1 80 3 110618758 110622241 GTCCGCAGATACACAAACTC 59 110622278 110622302 GTATGAAGATGTCTAAGCATCTCAG 59 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 2 2 3 65 X 62367013 62367031 GTTCACCAGTTACCAGCTG 59 62367060 62367078 AAGACGTCAGGGTAGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910672 ENSRNOG00000049310 ENSRNOT00000064455 3 1 1 60 2 115093027 115093047 AGCATTCATGTATCTACAGCC 58 115093067 115093087 TGATGATACTTTCCCTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r42 ENSRNOG00000006804 ENSRNOT00000066395 3 1 1 82 5 8916751 8919851 TAGATTCGATTGATGACCTCTC 57 8919892 8919912 GTTAGTGACTTGACTAATGCG 57 NA Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 2 1 1 85 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165479 82165498 TTAGCTGAACCAAGGAGTCC 60 NA Rattus norvegicus 81 Dcdc2 ENSRNOG00000017511 ENSRNOT00000068021 1 1 1 80 17 41976414 41976437 TTTAAGAGACTACCGTACAGTGAG 60 41974047 41976378 TAGTGAAGAAGCTTTCTGACCA 60 NA Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 1 2 2 80 20 6895719 6898881 TTACCCATGGAGAAGACCT 57 6898924 6898943 TTTGGAAATGGAAGTTGGGT 58 NA Rattus norvegicus 81 Rn60_X_0616.5 ENSRNOG00000051214 ENSRNOT00000076231 1 1 1 80 X 60970443 60970463 CAAAGGTAGAAGAGGTCACTG 58 60970503 60973697 CACATGCTTTCCAATTTCCTC 58 NA Rattus norvegicus 81 Ints9 ENSRNOG00000013459 ENSRNOT00000018071 2 1 1 80 15 48327661 48352121 TGAAACTGTACTGCCTGTC 57 48352163 48352183 AGTCCAACATAATAGTGGTGG 58 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000090603 3 1 5 81 17 39376122 39377427 CCTCCCTTCTCTGGAACAC 59 39377470 39377490 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 AABR07019903.1 ENSRNOG00000040105 ENSRNOT00000061683 2 1 1 80 13 6712701 6712721 GTCTTTGGACTACTGAAGGCT 60 6712599 6712661 CTGTTTCCTTGAATTTCCGGG 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 2 3 3 80 8 109533483 109541515 ATCCCTCTACTTCAGGATGTG 59 109533423 109533442 GTAGCGGGAATGGAATTCAG 59 NA Rattus norvegicus 81 Dnaja2 ENSRNOG00000016251 ENSRNOT00000022573 3 1 1 80 19 22572188 22577350 GATGCATCCGCTGAAAGTG 60 22577393 22577412 CAGAGCACATTCTTGCTGAG 59 NA Rattus norvegicus 81 Bmf ENSRNOG00000007529 ENSRNOT00000010381 1 1 1 85 3 110307445 110319511 TATGCAACAACACCAGCAG 59 110307378 110307396 TTTCTCGTCTGTTCAAGGC 58 NA Rattus norvegicus 81 Siah2 ENSRNOG00000013703 ENSRNOT00000018488 1 1 1 80 2 148875516 148891255 GTTTCCCTGTAAGTATGCCA 58 148875455 148875474 TCACAGATGTCTTCATGCTC 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076526 2 1 4 99 1 216295150 216295169 GAGATGCTAGCTCCTGAGTG 60 216295231 216335842 AACAATGAGGAAGCCCTCC 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863,ENSRNOT00000050393 3 2 2 80 1 188544158 188544177 GGATCTACACCTCTGTCCTG 59 188544217 188547406 TGGAGTCAACTTTGTCTATGTG 58 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 2 2 2 80 3 146983314 146983333 GGATGAAGACATTGTGACCA 58 146983370 146988575 GTTACTCTATTATCACTAGGAGCTG 58 NA Rattus norvegicus 81 Mir362 ENSRNOG00000036268 ENSRNOT00000054391 2 1 1 60 X 16117174 16117194 AATCCTTGGAACCTAGGTGTG 60 16117213 16117234 TTTGAATCCTTGAACAGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000084852 2 1 2 121 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099665 91115259 TGTCATAGTCTCCACAGTATCG 59 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 1 2 2 80 1 171978923 171978941 CACAACACCAGAAGGTTCC 59 171976641 171978883 GAGATGGACATAGTTACCTACAG 58 NA Rattus norvegicus 81 Ccl25 ENSRNOG00000028531 ENSRNOT00000037059 2 1 1 81 12 2434576 2434689 CGTGCTGTGATATTCTACTTCC 59 2434516 2434534 TCTTCACAGCCCTCTTCAC 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709,ENSRNOT00000075193 3 2 2 80 6 60720773 60720793 TTGGATAGCCTGATGTCAGAG 59 60720829 60726238 GGGACCAAATAGTGGAATTATACTG 60 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 2 1 1 80 1 228408714 228408733 AACTACAGCCTCAACTTGTG 58 228408776 228412863 AAAGTTTACCGGCATTGGG 59 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000065555 1 1 2 85 10 84979761 84979821 AGACAAGCTAGGTTGGCTG 60 84979870 84979888 GAAAGTGCATGACTCGACG 59 NA Rattus norvegicus 81 LOC100910077 ENSRNOG00000030000 ENSRNOT00000040297 1 1 1 60 8 42613655 42613677 GAATATACAGAGACCCATTTCCC 59 42613696 42613715 CCGTGATAACATAGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc39d ENSRNOG00000027343 ENSRNOT00000023114 1 1 1 142 6 2886931 2892996 TCAACAGAGCAACACTTCAG 59 2893101 2893119 ATGTCTTTGGTACCGTGAC 58 NA InUTR Rattus norvegicus 81 Rerg ENSRNOG00000027592 ENSRNOT00000030850 1 1 1 87 4 171072453 171072471 ATCAACCTACCGACACCAG 59 171070868 171072402 CTGGATGGTGTCTTCCTGG 60 NA Rattus norvegicus 81 Tmem178a ENSRNOG00000007907 ENSRNOT00000010927 3 1 1 80 6 3657750 3700247 CATCCTGAAAGGTATTGCACAG 60 3700287 3700306 AAAGGAATGTTCCGTAAGCG 59 NA Rattus norvegicus 81 Il12b ENSRNOG00000004380 ENSRNOT00000005898 2 1 1 82 10 30045799 30045818 TCTCCCTCAAGTTCTTCGTC 59 30045863 30047382 CGCACCTTTCTGGTTACAC 59 NA Rattus norvegicus 81 Prl3d1 ENSRNOG00000050920 ENSRNOT00000042298 2 1 1 80 17 39777580 39778348 CTTATACAACAGGACTCAGGC 58 39777520 39777539 AAGTCTTTGAGTCCAGACCA 59 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 1 2 2 80 1 207756471 207756489 TCAGCAACCCTTACCAGAC 59 207752090 207756429 TCAGAAACACAAAGGATGCAC 60 NA Rattus norvegicus 81 Vamp8 ENSRNOG00000012748 ENSRNOT00000017301 3 1 1 100 4 100252666 100252686 ATTATGACCCAGAATGTGGAG 58 100250431 100252604 TTGAAGTGTTCAGACGTGG 58 NA Rattus norvegicus 81 Ppp1r3e ENSRNOG00000014904 ENSRNOT00000019992 2 1 1 133 15 33536975 33536994 TATGATCGGACATAGAGCCG 59 33536861 33536879 TATAAAGCTCAGGTTGCGG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Pate3 ENSRNOG00000046243 ENSRNOT00000074011 3 1 1 82 8 36841020 36842329 CATTGTGGAAGCAACAACAC 59 36840957 36840976 AAACACCAAAGCCTCTTCTG 59 NA Rattus norvegicus 81 Gins1 ENSRNOG00000008091 ENSRNOT00000010955 2 1 1 80 3 146702669 146712150 GCTGAAGAAGTGGAGTGGT 60 146712194 146712212 CAAGCCTTCATCTCCTCCA 59 NA Rattus norvegicus 81 Rpl5l1 ENSRNOG00000037220 ENSRNOT00000056238 2 1 1 60 10 112564606 112564626 CCCATAGTACCAAACGATTCC 59 112564566 112564584 ACCTCTGCATTGAACTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra1 ENSRNOG00000003512 ENSRNOT00000004725 3 1 1 80 10 27315424 27320062 ACTGTCTTTGGAGTGACGA 59 27315362 27315380 ATAAGCCACCTTTGGGAGG 59 NA Rattus norvegicus 81 Mir3068 ENSRNOG00000035409 ENSRNOT00000053532 3 1 1 61 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468736 111468757 ATGTTGGAGTACTGCAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp3 ENSRNOG00000045965 ENSRNOT00000075465 3 1 1 132 10 37092764 37093268 CCTTTACTCAGGTGCTCGA 59 37092650 37092668 ATAAACAGCTGCAGCTGGA 60 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 3 3 3 80 4 157246377 157246685 ACATTCTTCCCTTTGACCAC 58 157246316 157246336 TGGCATTGATGTAATCAGACC 59 NA Rattus norvegicus 81 RGD1311946 ENSRNOG00000025245 ENSRNOT00000034240 1 1 1 60 1 218951898 218951917 TGTGCCCTTATCTAGAAGCC 59 218951935 218952655 CTTATTAGTGACTAAGTGTCGTGG 59 NA DesignRelaxed Rattus norvegicus 81 U2af1 ENSRNOG00000045860 ENSRNOT00000074081 3 1 1 80 20 10404571 10407461 GCACCGAGAAAGACAAAGTC 60 10404510 10404528 GCAACCGAGAACATCTGTC 59 NA Rattus norvegicus 81 LOC103693060 ENSRNOG00000052550 ENSRNOT00000088406 1 1 1 60 8 43497291 43497311 GAGACTCTACTCTTTGTGGTG 58 43497251 43497270 GTGAATTTCCAAGCAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp19 ENSRNOG00000020204 ENSRNOT00000027418 3 1 1 81 18 27119209 27119228 TATAGAGGCAGAGTTCGGGT 60 27119272 27120624 TCACCGACTTACGTGATGG 60 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 1 2 2 80 1 80710175 80710194 GCATCCTACAGACCATTCCT 59 80708334 80710132 GGTAGAGGAAGATGCCGTC 60 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 2 2 2 80 1 80708308 80708327 GAAAGAACCACAACCCAGAC 59 80706244 80708265 GCAGTTGTTCCTGTGACAC 59 NA Rattus norvegicus 81 Aldh5a1 ENSRNOG00000023538 ENSRNOT00000031384 2 1 1 81 17 42140860 42140878 TGCTCCGTAAATGGTACGA 59 42140923 42142292 AGTGGCTTTCCACTCTCAG 59 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 3 2 2 80 9 9744981 9745000 TGCATCAGTCACAGGATCAG 60 9745041 9746516 TCTTGTACACGTAGTCCACTC 59 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 1 2 2 90 10 37757310 37764327 CTGTGCTATGGTATACCAGAG 58 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Zfand5 ENSRNOG00000018107 ENSRNOT00000024583 1 1 1 84 1 238850397 238850982 CCTTACAGGGTTTGACTGC 59 238851027 238851048 GTAATCATAAGGACAGTTGTGC 58 NA Rattus norvegicus 81 Hoxd4 ENSRNOG00000001578 ENSRNOT00000002145 2 1 1 80 3 61649633 61650206 ATGTGAATTCGGTGAACCC 58 61650250 61650268 CTAGGACTTGCTGTCTGGT 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000009617 ENSRNOT00000013281 1 1 1 80 10 105243228 105243247 AATCTACCTGTGTTCCAGCC 60 105242682 105242973 ATTGAATCCCTTGAAACGTTCC 60 NA Rattus norvegicus 81 Svs5 ENSRNOG00000013834 ENSRNOT00000018537 1 1 1 105 3 160714571 160715143 AATAGGCAGGTTGTCCTCG 60 160715212 160715230 GAAGCACGGACTATTTCCG 59 NA InUTR Rattus norvegicus 81 Asna1 ENSRNOG00000003747 ENSRNOT00000067518 2 1 1 80 19 26135200 26140046 CCTCTTTGCTATGGAGATAGAC 58 26135141 26135159 CTCAGCATGTTGTCTTCCT 58 NA Rattus norvegicus 81 Bnc1 ENSRNOG00000019770 ENSRNOT00000067423 2 1 1 80 1 143803724 143803744 ATGAGGTTCTACAGATCCTCC 59 143801678 143803682 CTGAGGCATCCTGTAACAC 58 NA Rattus norvegicus 81 Sox30 ENSRNOG00000006098 ENSRNOT00000007978 2 1 1 81 10 31075253 31076905 CCTCAGATGCAGGAATACCT 59 31076946 31076967 ACCATAAATGCATTCATGGGTC 60 NA Rattus norvegicus 81 Trib3 ENSRNOG00000007319 ENSRNOT00000009840 2 1 1 110 3 147815943 147815962 TTTCCGACAGATGGCTAGTG 60 147814738 147815870 ACCAACTTCGTCCTCTCAC 59 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 3 2 2 87 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273696 50277578 GAGTCTTCAGACCTAGGTGG 59 NA Rattus norvegicus 81 Igsf8 ENSRNOG00000007604 ENSRNOT00000010028 1 1 1 88 13 90693482 90696895 TAATACTTGGAGCCAGGTGC 60 90696946 90696964 GGAGATAGAGACAGCGGTG 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000089616 3 1 2 171 10 90349330 90349447 CAAGCTATTTCGGAGACACAG 59 90350650 90350668 GTTGGATTTGAAGCTCGCC 60 NA InUTR Rattus norvegicus 81 Olr208 ENSRNOG00000045631 ENSRNOT00000051962 2 1 1 60 1 170743584 170743602 TACTCCTCCTGGTCATCAC 58 170743542 170743561 CAGAGCAGAAGATACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrr1 ENSRNOG00000004216 ENSRNOT00000005595 1 1 1 80 6 91466088 91466106 CCAAATTTGTGGACGAAGG 57 91466150 91468535 CAGGATTGGCCTTACTCAG 58 NA Rattus norvegicus 81 Nefm ENSRNOG00000013916 ENSRNOT00000018637 1 1 1 80 15 44858608 44858627 CGTCATTTGCGAGAATACCA 59 44857127 44858568 CAGTAGTTTCCTATATGGGCGA 60 NA Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 1 1 1 61 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478593 36479036 GGTAGGATCTGAGAATTATCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 2 1 1 61 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478592 36479036 GGTAGGATCTGAGAATTATCTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Vom2r46 ENSRNOG00000030104 ENSRNOT00000031015 3 1 1 84 2 154762875 154762894 TGCAATTATTGGAGCAGGAG 58 154761605 154762829 ATAGCCCACCTGAAGTACAC 59 NA Rattus norvegicus 81 Wdr5 ENSRNOG00000008212 ENSRNOT00000011556 1 1 1 80 3 6068069 6068090 AGGATATGGGATGTGAAGACAG 60 6068129 6071524 ATTGAAATGAACGGCTGAGAC 59 NA Rattus norvegicus 81 Mir222 ENSRNOG00000035581 ENSRNOT00000053704 1 1 1 60 X 3683947 3683966 TAGCCAGTGTAGATCCTGTC 58 3683989 3684007 ATCAGAGACCCAGTAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563917 ENSRNOG00000017273 ENSRNOT00000029635 3 1 1 80 9 92764464 92764485 TTAACAGAGTGAACCTGAAGGA 59 92762120 92764425 AGTATCTGTCCTGTAGCTCAG 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 1 2 2 80 1 144176520 144176538 CGGCGTTAGACTATCACAG 58 144176582 144177622 ATGCAAGAGCTATTCGCAG 58 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 3 2 2 80 1 144176521 144176539 GGCGTTAGACTATCACAGG 57 144176583 144177623 GATGCAAGAGCTATTCGCA 58 NA Rattus norvegicus 81 Uqcrq ENSRNOG00000048174 ENSRNOT00000073964 2 1 1 81 10 38782195 38782214 TATTTCAGCAAAGGCATCCC 59 38780339 38782151 AGAACAGTACAAATGGCGG 58 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 3 2 2 90 3 7194091 7194920 AGTGTAACAAGGTGTTCTCCA 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092,ENSRNOT00000083124 3 2 2 80 11 60546931 60546953 GGAATTCTTCATCCTTCTTCTGG 59 60536370 60546891 ACTCTGCATTCTTCACCGA 59 NA Rattus norvegicus 81 Ccnt1 ENSRNOG00000053054 ENSRNOT00000088999 2 1 1 80 7 140224537 140227774 CAACTTGTTCGAGCAAGCA 59 140222845 140222865 GCTAAATGTGGTCAAATGCAG 59 NA Rattus norvegicus 81 Rai2 ENSRNOG00000006670 ENSRNOT00000008703 3 1 1 186 X 34794510 34794528 GTGACAGCAAAGACAGAGG 59 34734207 34734226 ATTGAAAGGTTCTGGGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Luc7l3 ENSRNOG00000002835 ENSRNOT00000003914 3 1 1 84 10 82005553 82014908 TCTGACCTTGGTCCATGTG 59 82003708 82003728 AGCCAACTTTCATAAACCGAG 59 NA Rattus norvegicus 81 AC120727.2 ENSRNOG00000051858 ENSRNOT00000072444 1 1 1 60 X 1601075 1601094 GGCTTCTGTTACGAGATGAG 58 1601113 1601135 CCTGAATAATGACGTTGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563323 ENSRNOG00000026579 ENSRNOT00000036769 2 1 1 82 1 219894211 219894229 AGGGCAGAGAATGAACCTG 59 219893335 219894168 TGTGGTTTACTGACATAGTGCT 60 NA Rattus norvegicus 81 Xpo4 ENSRNOG00000010137 ENSRNOT00000013901 1 1 1 80 15 37845015 37845736 GGAATGACATCAATGAGTTCAG 58 37844956 37844975 TGCTTTAGCACATTGTTCAG 57 NA Rattus norvegicus 81 Fmo13 ENSRNOG00000043014 ENSRNOT00000066609 3 1 1 83 13 84688942 84688960 GATCAACAGATGGGCAGAG 58 84686722 84688897 CTGAGAAATCTGTGTTTAGCC 57 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 3 2 2 81 2 188753600 188753618 TAGGGCAGCATGTTACAGG 60 188753663 188753761 TCGAAGAGTTCTCTGCCTG 59 NA Rattus norvegicus 81 Ttc39b ENSRNOG00000042603 ENSRNOT00000058611 3 1 1 80 5 101346824 101346842 TCACTTTGTACCGTGTGAC 58 101339968 101346780 GCTGATGAACCTTCTGCTC 59 NA Rattus norvegicus 81 Prop1 ENSRNOG00000003671 ENSRNOT00000004872 2 1 1 88 10 36451054 36451072 TTGGGAGGAACCAGTATCC 58 36450250 36451002 GAACCAGACCTGGATTCTG 58 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 3 1 1 93 12 4249088 4249753 TGAAGAAACTGACCATTGGG 58 4249807 4249827 AGATACATGTCCTTGTAGGCT 58 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048445 ENSRNOT00000074937 2 1 1 60 2 115125992 115126013 TTATTGATCTCTGCCATTCCAC 59 115126034 115126052 TCTGCCACAAAGTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp958 ENSRNOG00000030410 ENSRNOT00000050885 1 1 1 81 12 5487195 5490652 AGAAGACACGGAAGACCTG 59 5487132 5487150 GATGTGCAAAGGCTTCACC 60 NA Rattus norvegicus 81 RGD1561215 ENSRNOG00000050763 ENSRNOT00000070906 2 1 1 80 4 155010709 155010729 TCTAGTCTGAAGTTCTGTGCA 59 155010770 155015538 CTTCTGCAACACGTTCACTC 60 NA Rattus norvegicus 81 Rn60_20_0009.4 ENSRNOG00000053949 ENSRNOT00000092227 2 1 1 60 20 1546978 1546997 CCTTGGTAACTCCCACTCTG 60 1546937 1546961 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 3 2 2 80 13 89392369 89395472 AAGCATAGGAGATCCGACG 59 89395514 89395534 AACAAGAGTCCTATCAGCAGG 60 NA Rattus norvegicus 81 Fnip1 ENSRNOG00000009104 ENSRNOT00000012671 3 1 1 80 10 39852046 39852069 ACAGACTCATCCATATAACCCT 58 39853473 39853491 CTTGCTAACCGTACTGGAG 58 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 2 2 2 80 1 177667426 177668226 CAAGCATGGATCAGACTGC 59 177668270 177668288 CGGTAGCTGAGACGATCTG 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 3 3 3 80 15 45505721 45505739 ATCCAGAACCTGAATGCCA 59 45503368 45505679 GGGAGTACATACTTCCTTCCC 59 NA Rattus norvegicus 81 Rn60_3_0729.2 ENSRNOG00000055145 ENSRNOT00000077283 3 1 1 60 3 66296067 66296086 CCTACACTTCTTCAAGCCTG 58 66296108 66296127 CACTATACTGCTGACTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd3 ENSRNOG00000060806 ENSRNOT00000089057 2 1 1 80 11 61855506 61873990 TGGTGTACTTGGAGGTGAC 59 61855444 61855462 TCATGACATCCAGGGTGAC 59 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 2 2 3 80 9 10369877 10369897 CCGTCTTTGTGTTTCAGAAGG 60 10359324 10359418 GATCAGAGTCTTCTCCGGC 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 2 2 2 81 14 86384633 86384651 CACAGACGCAGAAATCCTG 59 86383990 86384589 AGGATCAGATGCCTTGTCTC 59 NA Rattus norvegicus 81 LOC100911854 ENSRNOG00000050305 ENSRNOT00000072188 2 1 1 80 1 248728138 248728860 GAGCTATGAGAAAGTGGGTG 58 248728902 248728921 GCATCCTTCTAACACTGCTC 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 1 1 1 77 3 155103619 155105724 CATTCAGGGCATGTTCGTG 60 155105764 155105783 AAGATGATGAGGAACAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 2 2 2 80 16 83032496 83032516 GGATGACATAAAGACGTTGGG 59 83030168 83032455 TCATTCTTCTCCTCGCTTCC 60 NA Rattus norvegicus 81 Fbxo4 ENSRNOG00000015622 ENSRNOT00000020925 1 1 1 80 2 53807332 53807353 TTGAGTTTGATGTCTTCTGAGG 58 53803560 53807292 GACTCCAGATCCAATACCGT 59 NA Rattus norvegicus 81 Tmem199 ENSRNOG00000009896 ENSRNOT00000013220 1 1 1 80 10 65778168 65778191 CGGCTAGAGAAGATTAAGATACAG 59 65777290 65778129 CTGTGCATCCTGACAAGTG 59 NA Rattus norvegicus 81 Olr1164 ENSRNOG00000030965 ENSRNOT00000047442 2 1 1 60 8 20213454 20213473 ACAGTGATGCCCTATGACAG 60 20213493 20213514 GAATGACTTGGTAGTGTAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1356 ENSRNOG00000039773 ENSRNOT00000061019 3 1 1 60 10 11942236 11942255 CTAAGCATCATCCTGGTCTC 58 11942195 11942213 CAGAGCGGATCTTCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk6 ENSRNOG00000020599 ENSRNOT00000027953 1 1 1 60 16 21273978 21273996 TGTGCTCTACGTCATGGTC 60 21273936 21273954 TAGACCAGCAATGTCCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk6 ENSRNOG00000020599 ENSRNOT00000027953 3 1 1 60 16 21274124 21274142 CTCACGGATTTCGGTTTCG 59 21274082 21274100 AGTAGGTAGTGCTCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx5 ENSRNOG00000019208 ENSRNOT00000026156 2 1 1 80 10 59731220 59731505 AAGTTCAACTTCTCCAAAGCC 59 59731546 59731565 ATTTGTGGAGCTGAAGTGAC 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 1 1 1 80 2 178385310 178385329 TGCTGTACCTCAGATTACCA 58 178384667 178385269 CTCTCCATATTCACTCCTTCC 57 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000045833 2 1 2 83 15 45747481 45777987 AAGATCCTTCTGCAGGCTC 60 45778033 45778052 ATGAGGCTTCTTCTCAGAGG 59 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 1 2 2 80 1 274350256 274350425 GGATCAGGGTATCATTTACAGGA 60 274350465 274350483 CTACCAGAGACTTCTGCCC 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 1 2 2 80 13 99458244 99459399 GATCCACAGTCAGCAAATCAC 60 99458184 99458205 AGTGGTTGAAACAGAATCAGAG 59 NA Rattus norvegicus 81 Ube2q2l ENSRNOG00000023261 ENSRNOT00000035153 1 1 1 60 X 10771981 10772000 GAGATATACAGGTCGCAGAG 57 10771940 10771960 TGTCGTTTATCAGTTCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trub2 ENSRNOG00000043189 ENSRNOT00000064638 3 1 1 80 3 8348650 8348668 GCTGTCTATAAACCTCCGG 57 8347700 8348607 TGCATTGAGACCTTTAAGCA 58 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 1 2 2 80 5 115350462 115350480 GTGTAGACTGCCTCAACCT 59 115343914 115350420 TAGACATGATCTTGGGCAGAG 59 NA Rattus norvegicus 81 Gcg ENSRNOG00000005498 ENSRNOT00000007356 3 1 1 81 3 48446684 48446704 CTACAGCAAATACCTGGACTC 58 48445055 48446641 AATGTTGTTCCGGTTCCTC 58 NA Rattus norvegicus 81 Olr722 ENSRNOG00000006669 ENSRNOT00000008715 3 1 1 60 3 78748622 78748642 AACTTCCTTCTTCTGTTGGTC 58 78748663 78748682 CACTGTGGTTCTTTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553763 ENSRNOG00000029490 ENSRNOT00000024639 1 1 1 80 1 198794434 198794727 TCTCAAAGGCAACACAAGTG 59 198794373 198794397 GGTATTTCTTCAACTTCATAGTCCC 60 NA Rattus norvegicus 81 Cdk15 ENSRNOG00000022899 ENSRNOT00000071819 2 1 1 80 9 66131574 66147982 CCAGCTTCCTGATGAGGAG 60 66148026 66148044 TAGGAGGCAGAAAGGTCAC 59 NA Rattus norvegicus 81 AABR07037960.1 ENSRNOG00000003588 ENSRNOT00000004806 1 1 1 60 X 36280228 36280249 GAAGGAGCTGCACATTAATCTC 60 36280171 36280192 GGTCATTCCAATACCAGTATCC 58 NA DesignNoJunction Rattus norvegicus 81 Inpp5a ENSRNOG00000017635 ENSRNOT00000054890 3 1 1 81 1 211900183 211900296 GACAATGACCGTAAGGTCG 58 211900341 211900359 CATTGTTGTCCCGGAAGAC 59 NA Rattus norvegicus 81 Gemin6 ENSRNOG00000027332 ENSRNOT00000037739 1 1 1 80 6 2908168 2910748 CAGTCTCTGCCAACATTGTC 59 2910788 2910809 GCACAGAATGTCCCATAATTCC 60 NA Rattus norvegicus 81 Gemin6 ENSRNOG00000027332 ENSRNOT00000037739 2 1 1 81 6 2908114 2908133 TGAGAGTGATAGCCAGTGAG 59 2908177 2910756 TTCACGAGGACAATGTTGG 58 NA Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000079061 1 1 2 113 20 1897381 1897399 TTCATATCCGGACTCCAGC 59 1876759 1897304 AATGGACAACCTGAGAGCC 60 NA Rattus norvegicus 81 Ift57 ENSRNOG00000001958 ENSRNOT00000002684 3 1 1 81 11 53731577 53731595 AGTGGAGAAGCTGAAGCTG 60 53729118 53731532 AAAGTAGTGTCTGGACGGG 59 NA Rattus norvegicus 81 RGD1566085 ENSRNOG00000049970 ENSRNOT00000051678 1 1 1 80 20 10900521 10900540 GAACTCCAAGCTCATGTACG 59 10898136 10898830 GGAAAGGGACAGAACATGG 58 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 2 2 2 81 7 9826344 9826364 GATCCTTCCCAGAAGAATCTC 58 9826088 9826304 CTTCCCATTTACACCCTATACC 58 NA Rattus norvegicus 81 Agbl5 ENSRNOG00000008612 ENSRNOT00000011635 1 1 1 80 6 26854290 26854309 CTACGAGTTCAACGTATGGA 57 26854020 26854249 CTGAAGTAGAACCATGACCTG 58 NA Rattus norvegicus 81 Ube2ql1 ENSRNOG00000034075 ENSRNOT00000041762 1 1 1 252 1 36187082 36187100 CCTTCCCGGATAACTTCCC 60 36225024 36225042 AAGGTTGCTTCAGCTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Olr1388 ENSRNOG00000046425 ENSRNOT00000041536 2 1 1 60 10 34564412 34564430 TGATGCACCCTGTTCTCTG 60 34564454 34564472 TTCAAGAAGCCTCCTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk1b ENSRNOG00000027380 ENSRNOT00000004315 1 1 1 80 11 64536217 64537207 CACGTGATTGTTGGTATGTG 58 64537250 64537268 TGGATAAAGGCTGTGTTGG 58 NA Rattus norvegicus 81 Olr1069 ENSRNOG00000033263 ENSRNOT00000044882 1 1 1 60 7 9464846 9464865 TGCCTACATCCTTTCCACTG 60 9464805 9464823 GAAGGTCTTACTCCTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 1 1 1 60 20 1516174 1516192 CTTTGCTTCATCACCACCA 58 1516132 1516150 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx18 ENSRNOG00000010971 ENSRNOT00000066764 2 1 1 81 2 45479088 45479106 CATGGACCTGTTAGCACTG 58 45457402 45479045 TTTGGTAAGAGCTCCTTTCTG 58 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 3 1 2 237 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116964752 116964771 CTCAAGGCAGATTGCTTTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC689899 ENSRNOG00000030614 ENSRNOT00000040647 1 1 1 60 14 24129782 24129800 ATCCTCGAAAGAGTGCACC 60 24129819 24129842 GGGAATTTGATGATAGCATAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magee1 ENSRNOG00000002660 ENSRNOT00000003573 3 1 1 60 X 76085229 76085250 AAGTACCCTATCAAGGAATCTG 57 76085270 76085289 ACTGGTTGCGATATTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000066008 2 1 3 81 11 45888335 45888353 CACCGACTACAAGAAGCGA 60 45899630 45900828 CACAATGATGGATCTTTCTCAGG 60 NA Rattus norvegicus 81 Tyr ENSRNOG00000016421 ENSRNOT00000021971 2 1 1 80 1 151097514 151097536 GAGTTTGACCCAGTATGAATCTG 59 151076303 151097474 CTGGCAAATCCTTCCAGTG 59 NA Rattus norvegicus 81 Mir592 ENSRNOG00000036461 ENSRNOT00000054571 2 1 1 60 4 55182414 55182433 GATGATGTGTTGTGATGGCA 59 55182373 55182393 TGTCTTACGTCATGATGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1417 ENSRNOG00000047803 ENSRNOT00000047037 3 1 1 60 10 43997755 43997777 GCTATCTATAACTACATGCTCCC 58 43997717 43997735 ACACCACCATGTCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064,ENSRNOT00000087121 3 3 3 90 10 56715631 56715905 TTTCATCCCAAAGCATGCA 58 56715959 56715977 TTGAACTCCATCAGGGTGG 59 NA Rattus norvegicus 81 RGD1564698 ENSRNOG00000030106 ENSRNOT00000040278 2 1 1 60 10 19715587 19715607 ACATTTCTACTGGTACCTCAC 57 19715547 19715565 TAGGTGCAGGTAATCTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbp7 ENSRNOG00000015850 ENSRNOT00000021348 2 1 1 81 5 166280680 166280701 CACTTGTGTACAGAAAGGAGAG 59 166278445 166280638 GAACATTTCCAGGTGGAGC 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 2 1 2 112 10 15242587 15242605 ACTTTGACCTGACCCTCAG 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Esyt3 ENSRNOG00000022704 ENSRNOT00000017658 3 1 1 80 8 107565304 107565739 GGTGGATGAGTGGTTTGTC 59 107565242 107565260 TCAGTGAGTAGTGAGAGCC 58 NA Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 2 2 2 80 5 16913699 16913717 AACAACCATGGCCATTTGG 59 16909787 16913657 ACTTGCACAATAGTCTGACAG 58 NA Rattus norvegicus 81 Kdm4d ENSRNOG00000045905 ENSRNOT00000071532 3 1 1 60 8 13511923 13511942 AGAGATGACAGAAGTCCCAG 59 13511882 13511902 CTATTAAGTCTCCAGTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1g3 ENSRNOG00000016677 ENSRNOT00000022792 3 1 1 80 18 48865663 48865681 CCCATGAAATCCAGAGCAC 59 48865724 48868856 AGAGGAAATGCCATCTCCAG 60 NA Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 1 1 1 81 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190051 63190069 TTTGAACACAGGGATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 3 1 1 82 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190050 63190068 GTTTGAACACAGGGATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Retnlb ENSRNOG00000032187 ENSRNOT00000046890 1 1 1 80 11 54565725 54566260 TCCTGTTGGGATGGTTGTC 60 54565663 54565681 TGGCAAGTAGTTCCATCCC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076353 2 1 4 64 19 758388 759995 ACAGCCAAGAAGTCAGGAC 60 760019 760041 GTCATTCTATCCAGTTCTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Adra1a ENSRNOG00000009522 ENSRNOT00000012736 1 1 1 89 15 43300268 43391905 TAGTGATGCCCATTGGGTC 60 43391955 43391976 AACTATTTAGATACCCGAGCCA 59 NA Rattus norvegicus 81 Gpr62 ENSRNOG00000022567 ENSRNOT00000033018 3 1 1 98 8 115167418 115167436 GTTTATCCTGGCGGTTCTC 58 115167338 115167356 TAGAAGGCATCTTGCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo3 ENSRNOG00000030016 ENSRNOT00000064141 1 1 1 80 8 39904347 39904367 AACGTGTCTTTCCAATGTGAG 59 39902586 39904305 AAGCAAGACTTGACTCCCT 59 NA Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 1 1 1 60 10 64175218 64178041 GAGACGCAGATAAACATCACAG 60 64178061 64178080 TGGAAAGATGAAGAAAGCGG 59 NA DesignNoJunction Rattus norvegicus 81 Mcm6 ENSRNOG00000003703 ENSRNOT00000004969 2 1 1 80 13 45049432 45051303 GATGAGTGCAATGAGGTGAC 59 45049371 45049392 GTCTATCGATTCTTCGATCCTC 58 NA Rattus norvegicus 81 Grifin ENSRNOG00000001251 ENSRNOT00000001686 3 1 1 112 12 16170778 16171642 CCTTTGAGGTGGAGGTGAG 60 16171718 16171736 CACTCTGGTGATGGTAGCT 59 NA Rattus norvegicus 81 LOC688176 ENSRNOG00000017329 ENSRNOT00000023259 1 1 1 83 14 82353911 82353929 CTCAAACCTACCTGTGCAG 58 82353972 82354406 GAGTTCAGCCTAATATCAAAGGG 59 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089,ENSRNOT00000042713 1 2 2 82 11 38677393 38677411 AGAAGGAAATGTCAGCCTG 57 38675164 38677349 ACACATCTCCATGTTTGTCTC 58 NA Rattus norvegicus 81 Glo1 ENSRNOG00000000541 ENSRNOT00000000650 3 1 1 87 20 9279849 9283068 TCTTGGACTGACGCTTCTC 60 9279780 9279802 GATATCGTTCTTATCCTCGTACG 59 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 3 1 1 65 5 25168668 25172435 GTACAAACTTGGATGAGGCT 58 25172463 25172481 GATGGTGATCCACCATCAC 58 NA DesignNoJunction Rattus norvegicus 81 Nthl1 ENSRNOG00000012213 ENSRNOT00000016490 1 1 1 81 10 14002447 14002466 GTGGACCAAGAAGATGACCA 60 14002510 14002604 CTCACTCCATAGCACCCTG 60 NA Rattus norvegicus 81 Pcdhga2 ENSRNOG00000034126 ENSRNOT00000043154 3 1 1 60 18 30816634 30816654 CCTACATCTCCATCAACTCTG 58 30816676 30816694 TCATAGTCAAAGGAGCGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn3b ENSRNOG00000057221 ENSRNOT00000087022 1 1 1 80 8 44137283 44145429 CTACTGGGTCAGAGTCTGC 59 44145472 44145491 AGCTTCATGGGATTACCCTG 60 NA Rattus norvegicus 81 Olr1739 ENSRNOG00000052839 ENSRNOT00000084853 3 1 1 60 20 1810016 1810040 GTCTGAGAAATAGGGATGTTAAGAG 59 1810057 1810076 TGAGACTTCTCCATGTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 1 1 1 80 3 147747161 147749610 ATGAGCACAGAAAGCTTCG 59 147749650 147749672 CAACTCGGACATTATACTCTTGG 59 NA Rattus norvegicus 81 Serpinf1 ENSRNOG00000003172 ENSRNOT00000004313 1 1 1 85 10 62242109 62242371 GGACATGAAGCTACAGTCCT 59 62242043 62242061 TGTGTTCCACTTGGGTGAG 60 NA Rattus norvegicus 81 Josd2 ENSRNOG00000019442 ENSRNOT00000026379 3 1 1 81 1 100474513 100476134 AAATCTGCAAGAGGCTAGC 58 100476178 100476197 ACGTTGACATCATAGTTGCC 59 NA Rattus norvegicus 81 Icam2 ENSRNOG00000025143 ENSRNOT00000035474 2 1 1 82 10 94571179 94572448 ATCAGGGTGTATGAGCCTC 59 94571115 94571133 TCAATGGTGAAGGCTTCAC 58 NA Rattus norvegicus 81 LOC100910428 ENSRNOG00000050475 ENSRNOT00000073232 2 1 1 94 4 133540708 133540726 TGGAAGGAAGGTGATGAGC 59 133540780 133541072 TCATATTGACCAGGCAGATAGAG 60 NA Rattus norvegicus 81 Dusp23 ENSRNOG00000022143 ENSRNOT00000030449 1 1 1 67 13 91019614 91019632 TGTGAAGATCGTGGACGAG 60 91018825 91018843 CAAAGCCTAGAGCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ackr4 ENSRNOG00000011478 ENSRNOT00000015265 2 1 1 81 8 112645477 112646676 TTGGACAAACAGTTGCTTGG 60 112645415 112645433 AGTTCATCTCGGTGTCCTC 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 2 2 2 81 3 57389835 57389853 TGGAAGCGAGATTTACTGG 57 57376326 57389790 TTTGTTGAAGCTTTCGCTC 57 NA Rattus norvegicus 81 Dolk ENSRNOG00000016989 ENSRNOT00000022786 1 1 1 60 3 8850474 8850493 ACAAATCATCTCTGTGGCTC 58 8850433 8850453 GCTGTAGTTCAGGTCTACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 3 1 1 88 7 98816559 98816579 CTGAGAAAGCAGTGTATCCTG 59 98816629 98819205 CTGTTTAACCTCCCGATCC 58 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 3 2 2 80 4 138701647 138745880 ATGTGGTTGTGAAAGACCC 58 138745923 138745942 GAAGAACAATGCTTTCTCCC 57 NA Rattus norvegicus 81 Serpina3c ENSRNOG00000010410 ENSRNOT00000013896 2 1 1 80 6 128000904 128000922 ATCGCAGAACTGTTCTCAG 58 127999065 128000863 CTTCCATTTGCCTTTAAAGAGG 58 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968,ENSRNOT00000047657 2 2 2 111 10 94958204 94958224 AGCTGTATGCGAATATCTGTG 58 94959515 94960917 TCAAGGCCTTCTTGTTCTG 58 NA Rattus norvegicus 81 Btbd3 ENSRNOG00000008088 ENSRNOT00000010835 2 1 1 80 3 131352882 131353438 GACACAAATACGTCCTAGCTG 59 131353479 131353498 TCTCATCTTTGTCCTCAGCA 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000043870,ENSRNOT00000070918,ENSRNOT00000046246,ENSRNOT00000052367,ENSRNOT00000042251 1 6 6 80 6 4278350 4278371 CACCATTGGTCTGAAAGATTCC 60 4259352 4278309 TTGCTGGCAAATGTGTCTG 59 NA Rattus norvegicus 81 Mir204 ENSRNOG00000035472 ENSRNOT00000053595 2 1 1 61 1 240403036 240403056 CTTTGTCATCCTATGCCTGAG 59 240403079 240403097 AATTGAACGTCCCTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep4 ENSRNOG00000028946 ENSRNOT00000048264 2 1 1 60 10 102246299 102246318 CAGCCAGACAAGGAATTCTC 59 102246258 102246276 CTCAAACTCGGATCTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685763 ENSRNOG00000028880 ENSRNOT00000049913 2 1 1 82 X 63915811 63915830 GAGCCATCAACTTCAAGAGG 59 63915875 63915914 ACACTACATTCGGGACCAG 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000027895 2 1 4 81 15 34781763 34782179 CATACAAGAAGGGAGACTCTG 58 34782222 34782240 CCTGTTCCATGGTCATGAG 58 NA Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 1 1 1 80 X 54266770 54271061 CAATGAATGGCAGTCAATTTCC 59 54271102 54271120 TCAGGTATTGGTGCTCTGG 59 NA Rattus norvegicus 81 Slc17a2 ENSRNOG00000017180 ENSRNOT00000023241 2 1 1 81 17 43575525 43575543 TCACAATTTGGGCGAAGTG 59 43573416 43575480 GATCCAAATGCTGCTCCTG 59 NA Rattus norvegicus 81 Olr756 ENSRNOG00000048607 ENSRNOT00000040285 3 1 1 60 3 102620367 102620387 CTCATCAAAGGCACTATCCAC 59 102620407 102620427 CCCAAAGAATAGCACAACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558,ENSRNOT00000015963 2 2 2 80 8 64682056 64686967 AGGAAGAGAAGTACAGTATAACCC 59 64687003 64687024 TTTCATTCAGAGTGTTCATGCC 60 NA Rattus norvegicus 81 Ulk2 ENSRNOG00000002763 ENSRNOT00000003792 3 1 1 80 10 48114150 48125112 CTCTATGATGTTCAGGAATTACCC 59 48113137 48113159 CAAATAATCTGCCAGATCTCCAC 60 NA Rattus norvegicus 81 Timmdc1 ENSRNOG00000002999 ENSRNOT00000004023 1 1 1 81 11 64791020 64791039 CGTTCTTATGTCTCAGACCC 58 64791083 64795087 TCCGCTGTTCATCTTTGAC 58 NA Rattus norvegicus 81 Calb1 ENSRNOG00000007456 ENSRNOT00000010845 1 1 1 80 5 29539061 29539079 TACCTGGAAGGAAAGGAGC 59 29539123 29542655 AGGTGATAGCTCCAATCCA 58 NA Rattus norvegicus 81 Qrfpr ENSRNOG00000014414 ENSRNOT00000039615 3 1 1 89 2 122894203 122898613 GCCTTGAGATTAAGTATGACTTCC 59 122894137 122894156 TGTAGATTCTCTGGTGCACG 60 NA Rattus norvegicus 81 Plod1 ENSRNOG00000007763 ENSRNOT00000010433 1 1 1 80 5 164728502 164728522 GATAATTACCAGACCACCCAC 58 164727860 164728465 GATGTACTTCTCTTTCCAATCCTC 59 NA Rattus norvegicus 81 Irx1 ENSRNOG00000033609 ENSRNOT00000044690 3 1 1 93 1 33911405 33914382 CTCACAGATGGGCTCTCAG 60 33914437 33914457 ATAGGGATAATAAGCAGGCGT 59 NA Rattus norvegicus 81 Trappc5 ENSRNOG00000001003 ENSRNOT00000001327 1 1 1 73 12 2231559 2231577 CAAAGTTACAGCGCACTGG 60 2231614 2231632 GATCTCGGGCAATAACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm4sf1 ENSRNOG00000015812 ENSRNOT00000021535 2 1 1 80 2 147389863 147389881 AGAAGGACCAAAGTGTAGC 57 147385943 147389820 GAATCCAGAAGGTACTGTCC 57 NA Rattus norvegicus 81 Rgs4 ENSRNOG00000002773 ENSRNOT00000003774 1 1 1 80 13 88057826 88058139 CCTGATTAACCATGAATGTGGA 59 88057767 88057788 CAGAAGTCAATGTTCTCCTCAC 59 NA Rattus norvegicus 81 Gabrr3 ENSRNOG00000001679 ENSRNOT00000002281 1 1 1 80 11 43080009 43088209 CCTGGATTTGGAGGTTCAC 58 43079947 43079967 CATGTTGACCTCTGAAATGCT 59 NA Rattus norvegicus 81 Rn60_X_0633.2 ENSRNOG00000051233 ENSRNOT00000076550 2 1 1 60 X 63245875 63245893 CAAAGAACCCTGATGGCAC 59 63245833 63245855 TTCTTTCTAGGGATAGCACACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnbp ENSRNOG00000010239 ENSRNOT00000013884 1 1 1 80 4 119750486 119750506 TTCCTGACATCTGTTATCGCT 59 119750271 119750445 AGTTATAGCAGGCATCCTCC 59 NA Rattus norvegicus 81 Trim35 ENSRNOG00000009449 ENSRNOT00000012528 1 1 1 81 15 42966578 42969596 CAAGCACAATGAGGTGCAG 60 42969641 42969659 CACCCTCAGGAAATCTCGG 60 NA Rattus norvegicus 81 Pde6c ENSRNOG00000016593 ENSRNOT00000022317 3 1 1 80 1 256854504 256860834 ACTTGTACCAAATGAAGTCCAC 59 256860872 256860893 TATATTCCAGGTGATGTCGCTC 60 NA Rattus norvegicus 81 Olr1315 ENSRNOG00000048263 ENSRNOT00000050312 2 1 1 60 8 43469512 43469531 CCATTGATCTACAGCCTCAG 58 43469471 43469489 GACGTAGGACAATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr303 ENSRNOG00000047015 ENSRNOT00000040258 2 1 1 60 1 213095291 213095309 ATCACAGTCATCCACAGCA 59 213095249 213095272 GATTGACTAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmod3 ENSRNOG00000032443 ENSRNOT00000047453 3 1 1 85 4 129618190 129618209 GATGAACGAGTTCCTGTCAG 58 129614602 129614621 ATGCTTGCAATGCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp57 ENSRNOG00000022730 ENSRNOT00000011704 2 1 1 80 20 2016934 2016955 CTACACAGAAGACCCTTTACCA 60 2015566 2016895 GAGGTTTCTTCTTGCTTTCCA 59 NA Rattus norvegicus 81 Hmga1 ENSRNOG00000000488 ENSRNOT00000000580 2 1 1 102 20 7137430 7137448 AAGGGAAGCAAGAACAAGG 58 7138036 7138942 CCTCTTCCTCCTTCTCCAG 59 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 2 2 2 80 4 79954626 79954644 TGCCTATGGCATCATGGAG 60 79953011 79953102 CTTCCTCCCTCGTCTTGTG 60 NA Rattus norvegicus 81 AABR07065750.2 ENSRNOG00000050118 ENSRNOT00000072238 3 1 1 74 6 140102151 140102283 AAAGGTGTCCAGTGTGAGG 60 140102095 140102115 TAGTTTCAGAGACCTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Eva1a ENSRNOG00000007118 ENSRNOT00000009321 1 1 1 86 4 112802048 112802066 CTTGGAGATGGCTTTGCTC 59 112822374 112822392 GAGACAAAGTACAGAGCGG 58 NA DesignNoJunction Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 1 5 5 80 12 52398367 52398386 GTGTAGTCAGCATCATCACC 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA Rattus norvegicus 81 Atrip ENSRNOG00000020670 ENSRNOT00000028055 3 1 1 80 8 117798935 117799359 CTGGAACAAGAGGTAGTGTG 58 117798874 117798893 CTGACAGTCAGAAACAATGC 57 NA Rattus norvegicus 81 Ptchd1 ENSRNOG00000003675 ENSRNOT00000044129 2 1 1 80 X 42595902 42595924 GGAATCATCAATCTTACTGGTGG 59 42595959 42608789 GTATAATCCATGACCTAGCATGAC 59 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 3 1 1 95 17 47687949 47687967 TAGTTCAGGATGCATCGGA 58 47688025 47695299 CTTCAGATCCTGCTTCAGAC 58 NA Rattus norvegicus 81 Vamp5 ENSRNOG00000012659 ENSRNOT00000016984 3 1 1 84 4 100232477 100232495 ATTTCGACAAGGTCCTGGA 59 100231718 100232429 AAGGCAGAACTCATGTCCA 59 NA Rattus norvegicus 81 LOC102547216 ENSRNOG00000037486 ENSRNOT00000056743 1 1 1 80 6 144071944 144072078 GGTTTCATTCACATACAGACAC 58 144072114 144072137 ATAGGAGAGTAGTGTAATAGTCCC 58 NA Rattus norvegicus 81 Olr1135 ENSRNOG00000049064 ENSRNOT00000073314 1 1 1 60 8 19082330 19082351 TGGTTATCATCTTGGCTATCAG 58 19082291 19082309 AGGAAGAGGTACATGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 2 5 5 80 13 47424796 47425616 AATGAGATTGATGCTGGCG 59 47424734 47424753 TCGAAGTGCAAATTCCTCTG 59 NA Rattus norvegicus 81 Olr1148 ENSRNOG00000006584 ENSRNOT00000008605 1 1 1 60 8 19549270 19549291 TGCTTCAGTATCTAACTCTTCC 57 19549311 19549330 GAGCACACTGTACATCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493,ENSRNOT00000034256 1 2 2 60 3 142781732 142781751 GCTATTCCTGGATTCCAGAG 58 142781443 142781710 GTTGGGCTGTACTGATTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Obp1f ENSRNOG00000058697 ENSRNOT00000088538 1 1 1 80 X 45215358 45217150 TTTAGTTGCTGGGAAACGAG 59 45217188 45217211 GGAATATTATATTCCTCAGCCAGC 59 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000085612 3 1 3 80 6 29046692 29046711 TTCTTCTGATGAAGAGCGCT 60 29046752 29049765 AAGTTCATAGGCAAACACCTG 59 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 2 1 1 97 8 118891403 118892280 GGTGTATTCAGATACAGCCC 58 118891325 118891343 ATAGGGAGGAGGTATTGGG 57 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 3 2 2 80 1 142417277 142418612 GACCAAGGAGATCCAGTCC 59 142410683 142410701 TGGCCATTATGTGGGAAGG 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307,ENSRNOT00000080013 1 2 2 80 6 6648271 6652248 GACCTAAAGGTGTATATCAGATCAG 59 6652284 6652304 CATTTCTCATCTGACAAAGCG 58 NA Rattus norvegicus 81 Vwa9 ENSRNOG00000012469 ENSRNOT00000016798 3 1 1 80 8 70460641 70463119 CAACAAAGAAGGTGACGAGG 59 70463162 70463180 TTGCCAGCAATCTGATTGG 59 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 3 2 2 80 4 182575631 182576822 TTGCTGTAGATCACAACCAG 58 182575570 182575589 CTGCGGAAATCTTGTATGTG 57 NA Rattus norvegicus 81 Tpp1 ENSRNOG00000019212 ENSRNOT00000026280 2 1 1 80 1 170593593 170593611 GAAACAGCAGAACCTGGAC 59 170592290 170593552 AGGTACTTTCCATATCGAGGAG 59 NA Rattus norvegicus 81 Mrps15 ENSRNOG00000008279 ENSRNOT00000011565 2 1 1 80 5 144054646 144054895 CTACAGACTCCTAGTCTCCTG 58 144056106 144056125 TGGTTCATCATCTTGCTTGG 59 NA Rattus norvegicus 81 1700092M07Rik ENSRNOG00000048966 ENSRNOT00000073052 1 1 1 62 1 224938852 224938870 GTAACAGAGGAAGGCAGGG 60 224939012 224939030 AGATCTTTGTTTACGGCGG 58 NA DesignNoJunction Rattus norvegicus 81 1700092M07Rik ENSRNOG00000048966 ENSRNOT00000073052 2 1 1 63 1 224938851 224938869 AGTAACAGAGGAAGGCAGG 59 224939012 224939030 AGATCTTTGTTTACGGCGG 58 NA DesignNoJunction Rattus norvegicus 81 Atp6v1a ENSRNOG00000001992 ENSRNOT00000002727 2 1 1 80 11 61570931 61570950 TGAGGACCAAAGCTAAGGAG 59 61570993 61579091 CTAAAGACGCCTTTCCCAC 59 NA Rattus norvegicus 81 Rn60_3_0430.2 ENSRNOG00000006829 ENSRNOT00000008925 3 1 1 60 3 37875831 37875850 CCTTCATGTGTTTGACAAGG 57 37875790 37875809 GACATGATGGATTTCAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 1 2 2 80 5 167142238 167147196 TCAAGAGAAGACAGGGAAGC 60 167147239 167147257 CCATACTGGAAGGAGGAGC 59 NA Rattus norvegicus 81 Rn60_3_1509.3 ENSRNOG00000043043 ENSRNOT00000068257 1 1 1 63 3 144466146 144466164 GAGCCATATGGTGGAAGTG 58 144469745 144469763 CAAGATCCTCTCAGCCACC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_3_1509.3 ENSRNOG00000043043 ENSRNOT00000068257 2 1 1 64 3 144466146 144466164 GAGCCATATGGTGGAAGTG 58 144469746 144469764 ACAAGATCCTCTCAGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Polr3b ENSRNOG00000007432 ENSRNOT00000009746 2 1 1 80 7 24801354 24801373 CATCTCCACAAACCTTACGG 59 24798358 24801313 TTGACAATGATGTAAGGCCTG 59 NA Rattus norvegicus 81 Lrrc55 ENSRNOG00000028266 ENSRNOT00000031745 3 1 1 117 3 72597857 72601812 TGTACAGCGGATTCTCAGC 60 72597758 72597776 CATCCAGGGTCAGAGTCAG 59 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 2 2 2 80 4 33750803 33750823 CAAATACCATCACTGTACGGA 58 33750510 33750761 TCTATCTCAAAGCCTGGGA 57 NA Rattus norvegicus 81 RGD1561694 ENSRNOG00000029107 ENSRNOT00000040676 1 1 1 60 14 73675028 73675046 AAATGCTCCCAAGAGACCA 59 73675070 73675088 CTTTGGGCGATGTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk13 ENSRNOG00000013620 ENSRNOT00000018431 1 1 1 80 17 49889292 49899574 ATATAGCTCAGAAGAAAGCCGT 60 49899615 49899633 TCTCCCAAGAGCAGTTCAG 59 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 3 2 2 80 8 111564426 111564446 ACATTCCTCAACAAGTTCCTG 59 111564486 111565553 AAGATTTACAGCACCGATGAG 59 NA Rattus norvegicus 81 Lrp11 ENSRNOG00000014303 ENSRNOT00000019181 3 1 1 80 1 1720559 1720577 CAGAGAAGAGGATCCAGCC 59 1720618 1723342 TTCCTGAGGAATTACTGTCTGG 60 NA Rattus norvegicus 81 Foxn4 ENSRNOG00000000691 ENSRNOT00000065060 2 1 1 80 12 48114736 48115261 TCCTACAGCTGTCTGATCG 59 48115302 48115323 CATGAAGCTGTAGATCTCACTC 59 NA Rattus norvegicus 81 Tab3 ENSRNOG00000003643 ENSRNOT00000004854 2 1 1 81 X 54077147 54077167 AGAAGCATGAACAGACAACTC 59 54077204 54079761 CAAAGTTTCCTCTAGATTGAAGGAG 60 NA Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000091495 2 1 2 82 X 156889612 156889791 AAGCTCCTCTGGAAAGACC 59 156889548 156889567 AGCATAGATCCAAGGGTTGG 60 NA Rattus norvegicus 81 Rn60_3_1464.1 ENSRNOG00000026836 ENSRNOT00000036834 3 1 1 60 3 139945347 139945366 AAAGGCTAGATGTGACCCTG 60 139945306 139945327 GTCCTTGTTGACTGAGTTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364912 ENSRNOG00000004947 ENSRNOT00000006697 1 1 1 113 7 15026536 15027660 AAACTAAGTGGTCAAGTGGTG 59 15026443 15026462 TCCTTGTAAGGAGTTCTGGT 58 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902,ENSRNOT00000033068 3 2 3 80 9 65133216 65134669 ATCTAAAGAAGGACAACGGC 58 65134712 65134730 TCTTCTGGTTTCAAGCTGG 58 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049356 ENSRNOT00000073212 3 1 1 60 8 41898713 41898734 CTTCTTGGGAATCTATGTGGTC 59 41898752 41898773 AACAATCAGAACAATCAAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 3 2 2 81 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583896 38585700 GGTTTCAATCCTAGATGGATGG 59 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 1 1 1 80 4 182678305 182687884 GAGTCCTTATTCAGGTCTGGAG 60 182678246 182678265 GTCTTTGAGGAAATTGGCGT 59 NA Rattus norvegicus 81 Vps41 ENSRNOG00000012940 ENSRNOT00000067636 1 1 1 80 17 48705935 48708213 GAACTTCCATCAAGATATGCTC 57 48705876 48705897 CTATTTCAACGTATCGACTTGG 57 NA Rattus norvegicus 81 Vps41 ENSRNOG00000012940 ENSRNOT00000067636 2 1 1 80 17 48678254 48679191 GATTATGAGGGCTTTGCCA 58 48678192 48678212 TCGAACTGCTTGAACTATCAC 59 NA Rattus norvegicus 81 Wfs1 ENSRNOG00000005108 ENSRNOT00000034730 3 1 1 95 14 78654796 78654814 TCCCATGAAGGCAGATGTG 60 78654873 78656300 TAGTGTTTGCCCACCTCTG 60 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 2 1 1 64 X 65335684 65335864 AAGGTAAGAAGGCCCAAGG 59 65335638 65335658 TGGATTCTTGGTAGGGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Lin7b ENSRNOG00000020746 ENSRNOT00000028164 1 1 1 85 1 101358877 101359547 TGAATGGTGTGAGTGTGGA 59 101358810 101358828 CACCACCAGTTTCACTGAG 58 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076397 1 1 5 82 7 120763793 120764149 CTCTTCCAGAGGTCCTGAG 59 120763729 120763748 AGAAGAGGGCATCAGATCTC 59 NA InUTR Rattus norvegicus 81 Tmco5a ENSRNOG00000005100 ENSRNOT00000006809 3 1 1 80 3 108546571 108546591 GAATAGATGAAGCCAACCAGG 59 108546632 108547074 TGATCTCATGTTCCAGCCTC 60 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409,ENSRNOT00000013514 3 2 2 80 4 175858610 175862043 ACCTACGATGGAATGAACCC 60 175862085 175862104 TTTATCACAACTGCAGTCCG 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000003713 ENSRNOT00000046768 2 1 1 82 X 45251455 45251476 CAGAATACATGAACTTCGTGGA 59 45250789 45251412 GTTTGGACAGGTGTCTGTG 59 NA Rattus norvegicus 81 Prm1 ENSRNOG00000002532 ENSRNOT00000003420 2 1 1 222 10 4945913 4945931 AAATTCCACCTGCTCACAG 58 4946208 4946226 CCTAAAGGTGTATGAGCGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gpr146 ENSRNOG00000001288 ENSRNOT00000001733 1 1 1 60 12 17346882 17346900 CATGTGACACTGCTCATCC 59 17346840 17346858 GTGCAGTGGAGTACATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 1 1 1 80 1 226106790 226106927 TCCAGATTGAACACCACCTC 60 226106970 226106988 CACAGAATGCCTTGACCAG 59 NA Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 2 1 1 80 1 226104655 226104676 CAATATCTTCCACAAGGATCCA 58 226104717 226104991 TTCTTGCCATACTCCACAG 57 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 3 2 5 180 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80529945 80531276 TGCCCAAGTTGTTAAAGCTG 59 NA Rattus norvegicus 81 Olr1504 ENSRNOG00000045754 ENSRNOT00000050847 1 1 1 60 10 60772102 60772120 ACTTGTCCTTCTCTGACCT 58 60772060 60772079 ATGTTCTGAAGCAATTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr334 ENSRNOG00000042023 ENSRNOT00000067320 2 1 1 60 1 229443494 229443516 TCTCTACTCATCCATCATGTCAC 60 229443535 229443554 TGTATAGCTTCCCATCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 1 2 2 80 8 107910961 107910981 TGATTCTGAGACCTCAGAGGA 60 107911023 107913472 TGTACCAGTGTTGCTGAGG 60 NA Rattus norvegicus 81 Fbxw4 ENSRNOG00000046211 ENSRNOT00000072223 3 1 1 80 1 265400963 265400981 ACGAGTGAAGCTGTCTCAG 60 265397045 265400920 GGCATCTGACTGTATCTCCA 59 NA Rattus norvegicus 81 Ndufb7 ENSRNOG00000028717 ENSRNOT00000035890 3 1 1 81 19 24704983 24705001 CAGCTTTCCCAACTTCGTG 60 24705046 24705230 CATGCGCTTCACATAGTCC 59 NA Rattus norvegicus 81 Stfa2 ENSRNOG00000050110 ENSRNOT00000042374 3 1 1 84 11 67466272 67469369 ATCGCTGACAAGGTCAGAC 60 67469414 67469435 CTTGAACTTTATACTGGACGGC 60 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000029664 1 1 2 80 X 105575450 105575469 ATCAGAAAGATTGCTGGGTG 58 105575509 105575821 CAGAGGTAAACCTCCTTAAAGC 59 NA InUTR Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000088760 2 1 2 90 X 105577016 105579577 CCATGATTTCCAGAATGAACAC 58 105579627 105579646 ACTAGGGCTTCTCGTTACTC 59 NA Rattus norvegicus 81 Tecr ENSRNOG00000021808 ENSRNOT00000037608 3 1 1 87 19 24708287 24731878 ACTACGAGGTGGAGATTCG 59 24707666 24707685 ATTTCAGAAATGGTGGCCTG 59 NA Rattus norvegicus 81 Cend1 ENSRNOG00000045680 ENSRNOT00000074016 1 1 1 60 1 214408312 214408330 AATCACAGCAACCTGAAGC 59 214408270 214408288 TTGTATCAGGACTGCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem45a ENSRNOG00000048935 ENSRNOT00000073404 1 1 1 81 11 46765816 46765835 ACTACTAATGCACTTCCGCT 59 46765873 46766833 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Tmem45a ENSRNOG00000048935 ENSRNOT00000073404 2 1 1 82 11 46765815 46765835 TACTACTAATGCACTTCCGCT 59 46765873 46766833 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542,ENSRNOT00000081171,ENSRNOT00000078765 2 3 3 80 8 1676601 1676623 GTAACCAAACTAATGGATCGGTG 60 1654229 1676562 AGAGGTGTACTTTGGAGGTG 59 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 1 1 1 80 18 51643502 51643522 CCAAAGCGAGGAGAAATAGTC 59 51642584 51643460 CAAAGACACCAGTCTTCCC 58 NA Rattus norvegicus 81 Mpzl3 ENSRNOG00000026753 ENSRNOT00000032837 3 1 1 81 8 49361045 49361064 TCAGATGTCACTGACAAGCT 59 49361102 49365360 GATAATGGAAGATAGATTCTGTGCG 60 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108,ENSRNOT00000000640 2 2 2 80 20 8364883 8364903 CAGCTTGCTGAGAAATTTGTG 59 8364945 8365774 GTACACCTCCTTCACCCTG 59 NA Rattus norvegicus 81 Fam57a ENSRNOG00000007722 ENSRNOT00000010168 3 1 1 80 10 64365399 64365418 TTTGTCGGATGCATCTTCAC 59 64365459 64366130 CTGCTGCTTTAACTGGATCAG 59 NA Rattus norvegicus 81 Nudt18 ENSRNOG00000011831 ENSRNOT00000015969 3 1 1 105 15 52266931 52267157 ACCAACAGGTGGAGTTCTC 59 52267226 52267244 ATCATGAGCTCTAAGCGGT 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000010452 ENSRNOT00000014058 3 1 1 126 4 80332172 80332297 AAGAACAAAGGTATCACCTGG 58 80332066 80332084 TTAGGTCTGCCCTTTCTCC 59 NA Rattus norvegicus 81 Fam160a1 ENSRNOG00000048256 ENSRNOT00000071580 2 1 1 80 2 184986187 184993052 CCTACTTCTGTCCAGTGCT 59 184986125 184986143 CCTCACCCTTCTCTTCCAG 59 NA Rattus norvegicus 81 Fam160a1 ENSRNOG00000048256 ENSRNOT00000071580 3 1 1 81 2 184986188 184993054 TACCTACTTCTGTCCAGTGC 59 184986126 184986144 CTCACCCTTCTCTTCCAGC 60 NA Rattus norvegicus 81 Ppp1cb ENSRNOG00000004612 ENSRNOT00000006190 3 1 1 80 6 23557265 23559170 TGTCATGGAGGACTGTCAC 59 23557203 23557222 TGTATCAGGTACGTCAGTGG 59 NA Rattus norvegicus 81 Igfbp3 ENSRNOG00000061910 ENSRNOT00000088355 2 1 1 80 14 87461069 87461500 GGGAGACAGAATATGGTCCC 59 87461008 87461026 TGGGACTCAGCACATTGAG 60 NA Rattus norvegicus 81 Olr396 ENSRNOG00000025931 ENSRNOT00000030984 1 1 1 60 3 15749710 15749730 GTACTGTGTTTGAGTTCCTCC 59 15749750 15749770 AAGACATTCTGATGCTCTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gng13 ENSRNOG00000039350 ENSRNOT00000030273 3 1 1 90 10 15090460 15090480 GATGAAGAAGGAGGTGGAGAG 60 15090532 15090674 AATCCACTTGAGGAGCTCG 60 NA Rattus norvegicus 81 Apool ENSRNOG00000004512 ENSRNOT00000005997 1 1 1 80 X 83714284 83714304 AGCCTGGTTATTTACAAAGGG 58 83714346 83717973 GATAAATGCCCTTGCACCA 59 NA Rattus norvegicus 81 Ebf2 ENSRNOG00000011548 ENSRNOT00000016568 2 1 1 80 15 44083694 44083715 ATAGACTATGGCTTCCAAAGAC 58 44083755 44085334 TAGCATTTCCTTAGCTAGCC 57 NA Rattus norvegicus 81 Bst2 ENSRNOG00000059900 ENSRNOT00000091906 3 1 1 108 16 19941283 19941301 AAGGTGTCTCAAACCCAGG 60 19939313 19941215 CTGTGGTAGAAATTTCCTTTCCC 60 NA Rattus norvegicus 81 Ndufa11 ENSRNOG00000048320 ENSRNOT00000070862 1 1 1 80 9 10335160 10335178 CACAACCCTGCAGATTCTC 59 10334896 10335117 CATAGCTCCAATAGCAGCTG 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 3 2 4 80 14 22529845 22532484 ATGACCTCCTTGGTCATCC 59 22532525 22532546 CATGATAGATGGCCTCATAGAC 58 NA Rattus norvegicus 81 E2f4 ENSRNOG00000015708 ENSRNOT00000021145 3 1 1 81 19 37253049 37253469 CTTGACCTCAAGTTGGCAG 59 37253514 37253532 TACCTTCCAACACGTTGGT 59 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 1 2 2 86 14 104274952 104274971 CTTACTTTCCAAAGCCCTGC 60 104275015 104277348 GGTTGTTGAACCTTCTATAAGGTC 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085931 1 1 5 86 2 192539036 192566885 TGTGCCATAGTGTCCTGAG 59 192566935 192566953 TTCTGCTGACATGGTGGAG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 2 2 5 171 2 192553984 192554002 TGTCTTACCAACAGCAGCA 60 192616086 192616104 GGAGGAGTTTGGACAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_0814.31 ENSRNOG00000051026 ENSRNOT00000075915 3 1 1 90 5 77336884 77336906 GGAGCAATGTTCTATAGGAAAGG 59 77332300 77336834 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Pet100 ENSRNOG00000050169 ENSRNOT00000071928 1 1 1 80 12 2170674 2171437 GGTGTTTCGGATGTCACTC 59 2171481 2171499 TAGTCCTCGAACCACTCAG 58 NA Rattus norvegicus 81 Celf1 ENSRNOG00000010379 ENSRNOT00000014484 3 1 1 80 3 79826155 79826173 TTTACACCCGTAAAGCTGC 59 79826216 79826608 GTATAGGGTGATGCATCCCA 59 NA Rattus norvegicus 81 Psmd12 ENSRNOG00000003117 ENSRNOT00000004283 2 1 1 80 10 95721545 95721565 CTGACGTCTTCAGTTCTACAG 58 95721606 95723364 TTCTGATGTTATGCTCCACG 58 NA Rattus norvegicus 81 Tfam ENSRNOG00000000613 ENSRNOT00000000753 2 1 1 124 20 18595146 18596699 AAGCTAAACACCCAGATGC 58 18597313 18597331 GTACACCTTCCACTCAGCT 59 NA Rattus norvegicus 81 Tspo2 ENSRNOG00000050521 ENSRNOT00000073130 1 1 1 95 9 14513193 14513884 TACTCTGTCATGGGCTACG 59 14513943 14513961 GAAAGAGTAGAGGCCGAGG 59 NA Rattus norvegicus 81 LOC100360690 ENSRNOG00000049161 ENSRNOT00000074115 2 1 1 80 1 252166245 252167330 CAAGAGCTCACATAACACTAGG 59 252166186 252166207 TCAAGAATCCAGTAATCAGCAG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909,ENSRNOT00000004921 3 2 2 80 X 104776598 104776616 CATCCATGTCAAGGAGTGC 59 104776287 104776557 AGATAAGTCTTCACGTATGGGT 59 NA Rattus norvegicus 81 LOC100911575 ENSRNOG00000037607 ENSRNOT00000057030 1 1 1 122 1 214428535 214428553 GTTGCCTCTTATCTGCTGG 58 214428638 214429334 ACTGATGACCTTGTTGAGTC 58 NA Rattus norvegicus 81 Foxa2 ENSRNOG00000013133 ENSRNOT00000017742 3 1 1 102 3 142383465 142384456 CAGCGAGTTAAAGTATGCTGG 60 142385529 142385547 TTGCTCACGGAAGAGTAGC 60 NA InUTR Rattus norvegicus 81 Ptdss2 ENSRNOG00000015912 ENSRNOT00000021925 3 1 1 80 1 214144662 214144681 TTCGAGTTCCTGGAGTACAG 59 214144723 214144830 TACGTCCATGATCCAATGGT 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 2 2 2 80 6 36949272 36949290 TCATGTGCCATTCAATGCT 58 36949332 36951670 TCTTCCCACTTCCATTATTGC 58 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 2 2 2 80 15 103244245 103244263 CGAAATCAGGATGACCGTG 59 103235739 103244204 ATAACCAGCAAAGTTTCCTGTG 60 NA Rattus norvegicus 81 Ppp1r26 ENSRNOG00000027193 ENSRNOT00000036601 1 1 1 60 3 7037341 7037359 GCGGAAGTTTAGGAAGAGG 58 7037380 7037401 GCCAAATCTGACCTTCTTACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr226 ENSRNOG00000061860 ENSRNOT00000090329 3 1 1 60 1 148847085 148847103 CTCCATTGCTCAACCTGTC 59 148847043 148847062 AGGACAAAGTCTGTAAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 1 1 1 60 13 50740498 50741401 TGGAGACTTCAAAGGGATGAC 60 50740458 50740476 GGAGATGGAGTTGCTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AC109844.1 ENSRNOG00000053259 ENSRNOT00000088899 1 1 1 60 1 213583668 213583688 CCATTATAAATTCGGCACCAG 58 213586807 213586828 ACCTTGTTCTGCTATTTCTGAC 59 NA DesignNoJunction Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Greb1 ENSRNOG00000024651 ENSRNOT00000032417 1 1 1 80 6 41945794 41945812 ACTTTGTCTTCAGCCAACC 58 41943883 41945753 TGATGTGCTCATAACTCTTGTC 59 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000077882 1 1 2 80 10 103544130 103544386 GTTCCTTTGAGGTTTAGGGT 58 103546104 103546123 TTCATGACTTCTCACCTCCT 58 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 2 3 3 80 20 2205231 2205627 TATAAGACAGTAAGCGTCACC 57 2205171 2205189 GGTAATGCACTTCCAGTCC 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 80 7 104529645 104534635 CGAAATACGAGAGGCAATCC 59 104529584 104529602 CCTACTAGTGGCACGACTG 60 NA Rattus norvegicus 81 Cryge ENSRNOG00000032869 ENSRNOT00000041632 2 1 1 83 9 72933670 72933688 AGTACCCTGACTACCAGCA 60 72933735 72935147 TTCTGTGAGAGCTGGAGTG 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458,ENSRNOT00000080386 1 2 2 88 X 104430003 104430021 AGCCTGTACTGCGATACTG 59 104393046 104429952 TCATTCTGGTCATGGTCAGG 60 NA Rattus norvegicus 81 Enpep ENSRNOG00000051854 ENSRNOT00000087062 3 1 1 80 2 233732602 233732621 AGGCGACTTACAACATATCC 58 233730701 233732561 GTGTCTCTTCCTTCTCTACTG 57 NA Rattus norvegicus 81 Pgr15l ENSRNOG00000021547 ENSRNOT00000035405 1 1 1 80 X 66318738 66318757 TGGAGTATTGCAGTGTTCCT 59 66318798 66319220 GACATCACCATCCATGTTGAC 59 NA Rattus norvegicus 81 Lipm ENSRNOG00000019301 ENSRNOT00000026219 1 1 1 80 1 252415473 252418226 ATTGAAGAAGGAAGGATCCAG 58 252418268 252418286 AGGTTGGAAATCCAGTTGC 58 NA Rattus norvegicus 81 Cfap126 ENSRNOG00000034221 ENSRNOT00000050804 1 1 1 93 13 89492035 89494142 CCAACCAGTATGAAAGGGC 59 89494363 89494381 TAACCTTCATGGGTAGCGA 58 NA Rattus norvegicus 81 Cfap126 ENSRNOG00000034221 ENSRNOT00000050804 2 1 1 94 13 89492035 89494142 CCAACCAGTATGAAAGGGC 59 89494364 89494382 GTAACCTTCATGGGTAGCG 58 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 1 3 3 80 15 51815493 51815513 TTCTATAACAGCCGACTTGAC 58 51815550 51817867 CATTTCCGAGTAGTAGATAACCTG 59 NA Rattus norvegicus 81 Phospho2 ENSRNOG00000007979 ENSRNOT00000010489 2 1 1 86 3 56031047 56031065 AGGCTGGGTTTCTACACTG 59 56031549 56033439 ACGAAGACTTCTTAATTCCAGC 59 NA InUTR Rattus norvegicus 81 Daw1 ENSRNOG00000016247 ENSRNOT00000068236 3 1 1 80 9 88964593 88975710 ATTACCCACCAGGAATTATGC 58 88975747 88975770 GACTGAGCTCAAGTAAATCTATGG 59 NA Rattus norvegicus 81 Rn60_X_0649.2 ENSRNOG00000051212 ENSRNOT00000076836 3 1 1 60 X 63984261 63984280 GGTACCAGGAAGACTTTCAC 58 63984220 63984240 GGTTCTTACAGCAAGTAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1ql4 ENSRNOG00000060020 ENSRNOT00000081784 2 1 1 90 7 140767913 140770125 ATGAAGAACGGACAGGTCC 59 140767841 140767859 CTAGGTGCAGAATGACGCT 60 NA Rattus norvegicus 81 Foxn1 ENSRNOG00000010870 ENSRNOT00000014672 2 1 1 80 10 65624648 65628818 CACTTCCCTTATTTCAAGACTG 57 65624589 65624608 CTCAAAGCACTTGTTGAGAG 57 NA Rattus norvegicus 81 Pcdh12 ENSRNOG00000019265 ENSRNOT00000026065 2 1 1 80 18 31424739 31427903 CTGTTCAGCAAATCTCCCAG 59 31424678 31424699 ATTTATTTCCTCGGTGGTTTGG 59 NA Rattus norvegicus 81 RGD1561197 ENSRNOG00000033366 ENSRNOT00000040244 3 1 1 80 15 67092876 67092948 GCAAGAGTCCAATGAGACC 58 67092990 67093010 TCTAAATCTCCAGAGGTGTGG 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825,ENSRNOT00000036233 3 2 5 96 5 101656446 101656464 GTTAGGAAGGAGGCTGGTC 60 101656523 101660757 GTTCTGAATTCTGAGCGCAG 60 NA Rattus norvegicus 81 Nmur1 ENSRNOG00000018521 ENSRNOT00000025024 3 1 1 80 9 93403684 93404038 CAAGATGCTAATTGCTCTGGT 59 93403624 93403643 ACCATACTCCACATGAGACG 59 NA Rattus norvegicus 81 Kel ENSRNOG00000015682 ENSRNOT00000021485 3 1 1 80 4 70981807 70981825 AAGCTGTGTACGATCCCTC 59 70981601 70981764 GGAGATTTCTGCCATCTGTG 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438,ENSRNOT00000005731 1 2 2 80 6 36096127 36098932 CAATCACTATGGTCTACTGATCG 59 36098968 36098990 GTAAGATATGCCTTCAAGTAGCC 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 1 1 1 80 12 12401625 12401746 ACTATGGCATTGGTGGAGG 60 12401790 12401808 GATCCCTGGACATGTTCCT 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 2 1 1 80 12 12401624 12401745 GACTATGGCATTGGTGGAG 58 12401789 12401807 ATCCCTGGACATGTTCCTC 59 NA Rattus norvegicus 81 Ska3 ENSRNOG00000021847 ENSRNOT00000032723 2 1 1 80 15 38083152 38083170 ATTGCCACCTAAGTTCTGC 58 38081548 38083114 GGATAATCTATAGACACCAGATCTG 58 NA Rattus norvegicus 81 Olr796 ENSRNOG00000046306 ENSRNOT00000075514 2 1 1 60 3 103657136 103657157 GTGACATCAGAGTTTGTGTTCC 60 103657175 103657196 AGAGAAGCAGTTGAATATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1403.1 ENSRNOG00000051358 ENSRNOT00000076525 2 1 1 60 2 120637845 120637866 GCATTGGCTAATCTTAAGAAGG 58 120637884 120637905 TCTGCCTGGATAGCTTTATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 2 2 2 80 X 105268445 105268464 AGAGGCTTAAACAGCTCCAG 60 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Tbc1d10b ENSRNOG00000017349 ENSRNOT00000023706 3 1 1 80 1 198648719 198651727 GTACTCAGGCAGCCTAGAG 59 198648657 198648676 TTACTGAACATCTCCAGCCA 59 NA Rattus norvegicus 81 Lyl1 ENSRNOG00000002950 ENSRNOT00000003980 2 1 1 98 19 25816362 25816474 CCTCAACAGTGTCTACATTGG 59 25816534 25816552 TCAACCAAGTCCAGCTCTC 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773,ENSRNOT00000010419 1 2 2 80 6 25099679 25100258 AAGAGGATGCAGGATCAGC 60 25100301 25100320 ATCAACCACTTCTAGCAGCT 59 NA Rattus norvegicus 81 Rn60_5_0814.27 ENSRNOG00000051357 ENSRNOT00000076970 1 1 1 84 5 77403035 77403761 CTTGATGGGAAATCAAGATCCC 59 77402972 77402990 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 1 1 1 72 20 2541198 2541216 ATACACATGCCATGTGGAG 58 2541022 2541162 CATACTGGACTGAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Bsph2 ENSRNOG00000046669 ENSRNOT00000071105 1 1 1 80 1 75847750 75849603 GACTGAATGCAGAATTGATCTC 58 75842520 75842540 AGACAAATGGAAAGACACAGG 59 NA Rattus norvegicus 81 Vip ENSRNOG00000018808 ENSRNOT00000025477 2 1 1 80 1 42172926 42173824 GATGTGTCCAGAAATGCCA 58 42173868 42173886 TTTGGCAGAAATCTGACCC 58 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 3 2 4 80 2 9465208 9465228 GGAAATATCACCTTTCCACCC 59 9463421 9465168 ATCATTCTCTGGTACCTCGTC 59 NA Rattus norvegicus 81 Pth ENSRNOG00000014318 ENSRNOT00000019199 3 1 1 63 1 178216459 178216477 GTTTGTCTCCTTACCCAGG 58 178216303 178216323 GCTGTATTTCACTGACAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC500846 ENSRNOG00000031425 ENSRNOT00000049063 1 1 1 80 7 69104817 69104836 CCCTGCAAGAATTCTTCCAC 59 69100414 69104775 CATGAGATGGAACGCTTCAG 59 NA Rattus norvegicus 81 Mmp8 ENSRNOG00000009907 ENSRNOT00000013936 3 1 1 80 8 5770928 5770947 GACTCTGGTGATTTCTTGCT 58 5770984 5771676 GGTATGGTTTATAATCCTGTAGGTC 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 1 2 3 80 18 56444953 56446253 CATCTCCCTAGGACAAAGCA 59 56446293 56446314 GACATGACAGATATACAGGCCA 60 NA Rattus norvegicus 81 Prkcdbp ENSRNOG00000017914 ENSRNOT00000024119 2 1 1 87 1 170317715 170318275 CTGCTCTTCAAGGAGGAGAC 60 170317647 170317665 CTAGCACCAACTGGTCCTC 60 NA Rattus norvegicus 81 Olr44 ENSRNOG00000018512 ENSRNOT00000024965 3 1 1 60 1 167732121 167732141 ATTGCTGTATCCTATGCACTC 58 167732081 167732100 TAGCTTCTTTGGAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1160 ENSRNOG00000049729 ENSRNOT00000050608 1 1 1 60 8 19995041 19995060 CCATTTGTCACCCTCTACAC 58 19995081 19995101 AGCAAACATCTACACAGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428,ENSRNOT00000088928 1 2 2 80 15 51234090 51235083 ATTTCAAAGGTACTTGGCCC 59 51235125 51235144 ACCACAATGCCATAGTTCAC 59 NA Rattus norvegicus 81 Cacng5 ENSRNOG00000003288 ENSRNOT00000004578 2 1 1 80 10 96125612 96129097 TCTTTATCCTATCCGGCCT 57 96125550 96125568 TTCTGTTGAGCATCTCGTC 58 NA Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000021972 2 1 2 80 18 44737216 44737236 TGGACATCTATGGACATCTGG 59 44737272 44738113 GATATTGTTACATTCTCCCTACAGC 60 NA InUTR Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000086431 3 1 2 83 18 44716369 44716388 GTGTGACTCTATCCAGACAC 58 44716434 44778259 AAGACATCTGTAGCCACCA 58 NA InUTR Rattus norvegicus 81 Ivl ENSRNOG00000009314 ENSRNOT00000012343 3 1 1 80 2 192762572 192762590 CAGCAGCATCAAGAGACTC 58 192762183 192762529 ATCCAGTACCATATCTGGCT 58 NA Rattus norvegicus 81 Gpr1 ENSRNOG00000045532 ENSRNOT00000072737 3 1 1 60 9 69960017 69960041 TCCTATGCCTTAGAATATTACTCCC 60 69959981 69959999 TTCCCGGGTACACATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1166 ENSRNOG00000046909 ENSRNOT00000048326 3 1 1 60 8 20266580 20266599 AATCCCTTCCTCAAGTAGCA 59 20266621 20266640 TACGGACAGATGAGAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr823 ENSRNOG00000013247 ENSRNOT00000017689 3 1 1 60 4 148477194 148477216 GTCAAAGAGAAACCCTATCTCCT 60 148477233 148477254 CCATGTAAGGAAATAGAGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem163 ENSRNOG00000003769 ENSRNOT00000005006 2 1 1 80 13 44176256 44193917 CTGAAGTGGACGATTTCCT 57 44176194 44176212 GCATGAACTTCAACACAGC 58 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927,ENSRNOT00000080364 1 2 2 83 12 18117995 18118015 TGAGTTGATCTCCAAGTTGGA 59 18108403 18117950 TTATGGACATCTGGCAGGC 60 NA Rattus norvegicus 81 LOC684509 ENSRNOG00000050514 ENSRNOT00000074950 2 1 1 60 2 210115939 210115957 CTCGCTGTAATTATGCCCA 58 210115897 210115916 CCTTGTTGATCATGCTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684988 ENSRNOG00000028021 ENSRNOT00000034694 2 1 1 60 3 4341384 4341404 CCGCCTGATTCTAATTGAGAG 59 4341344 4341366 CCGCTTAGTCTTATAGTATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684988 ENSRNOG00000028021 ENSRNOT00000034694 3 1 1 60 3 4341386 4341406 TTCCGCCTGATTCTAATTGAG 58 4341346 4341368 GCTTAGTCTTATAGTATCGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp113 ENSRNOG00000001341 ENSRNOT00000001815 1 1 1 80 12 19292374 19292392 TCCTGACAAGGACAGTCTC 58 19291846 19292331 TCAAATGTCACCAACTCCTG 58 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 3 2 2 86 1 72639154 72639174 CTAAAGACTCTGGAGCCAGAG 60 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Trh ENSRNOG00000011824 ENSRNOT00000015944 1 1 1 94 4 124112316 124112334 TGGAGAATGTTCAGGTCCG 59 124111753 124112259 GATCCAGGAGTCTAAGGCAG 59 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000091687 3 1 2 86 1 80218957 80218975 CAACTAGCACAAGCACCAG 59 80217053 80218910 GATCCGTTTCTGTTTCTTCTCG 60 NA Rattus norvegicus 81 Iah1 ENSRNOG00000060853 ENSRNOT00000087180 1 1 1 80 6 43397944 43400006 GACAACCAGGACTTCTCGT 59 43400048 43400068 GAGGTGGAAGAACAGAAACTC 59 NA Rattus norvegicus 81 Mir291b ENSRNOG00000056886 ENSRNOT00000092137 1 1 1 67 1 64537910 64537928 AAGTTGGAACACAGGGTCC 60 64537861 64537879 AAATGGATGCACTTTCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtcd1 ENSRNOG00000014575 ENSRNOT00000020149 1 1 1 80 2 219547061 219547079 ATCTGTACGTCAGCATCCA 59 219545115 219547018 CAGCAACAATGATGATTCCG 58 NA Rattus norvegicus 81 Arfgap2 ENSRNOG00000014429 ENSRNOT00000057161 3 1 1 82 3 80090475 80091412 GGCCTATTTCAGAAAGAACCA 58 80091456 80091474 CTTCTGACGTGCTTCACTG 59 NA Rattus norvegicus 81 Nat8b ENSRNOG00000015851 ENSRNOT00000021243 2 1 1 94 4 117606860 117607319 GTGTAGTAGCGGGACTCAG 59 117606784 117606804 TCGCAGATGTGATAAGAAACC 59 NA InUTR Rattus norvegicus 81 Alkbh6 ENSRNOG00000025216 ENSRNOT00000051259 3 1 1 95 1 88770222 88770240 CAAAGTGTCTGACCTCAGC 59 88770299 88770531 TCTTCATGAGGCATGATGC 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240,ENSRNOT00000050535 3 3 3 129 11 71117905 71117925 CGATTAACTCGTACTGCTGTG 59 71116664 71117814 TCAACGTCATCCCTGTCTG 59 NA Rattus norvegicus 81 Olr210 ENSRNOG00000029365 ENSRNOT00000042820 2 1 1 60 1 170796296 170796316 GAAGTGGATTCATCTTGGAGG 59 170796338 170796356 GCACAGAGCAATTCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oit3 ENSRNOG00000046365 ENSRNOT00000075682 1 1 1 80 20 29017307 29020347 CTTGCGAAGACATCGAAGG 59 29017245 29017265 ACTGATAACCCTTCTCAGACC 59 NA Rattus norvegicus 81 Ranbp10 ENSRNOG00000018000 ENSRNOT00000024891 3 1 1 80 19 37738440 37738758 CAGAGATGTTGCAGGATGC 59 37738378 37738396 TGGGATCAAGCTGATGACC 60 NA Rattus norvegicus 81 Kars ENSRNOG00000019456 ENSRNOT00000046126 3 1 1 80 19 44216531 44217378 TTGATAAGCTTGTGGGAGAG 57 44216470 44216488 GACTCATGATCTGTGGGTG 58 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 1 1 1 80 10 84781220 84781547 CTCACCGAGGTATGTGGAC 60 84781158 84781177 TCCTTCTTCAGAGCCAACAG 60 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696,ENSRNOT00000038798 3 2 2 80 1 102126638 102126656 GATGACAAGAGGACAGTGG 58 102125292 102126597 ATCCTTCATAGCAATGATCCAG 58 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 3 3 3 80 4 125716804 125718358 GGGAACCCATTTATATCGGTC 58 125716744 125716765 TTAATTCATCTCCAGACCTCAG 57 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 1 4 5 82 2 30666646 30667396 CTCGGGAAGTCTGATCACC 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Apip ENSRNOG00000007446 ENSRNOT00000009797 3 1 1 80 3 92986508 92986527 GGAATCAGCTTGAAGCATGG 60 92989910 92991352 CATGTCTTCTGGCTGAATGC 60 NA Rattus norvegicus 81 LOC686013 ENSRNOG00000005533 ENSRNOT00000007407 3 1 1 81 19 25125554 25125574 CGCTTGGAACAGTTAGTTCTC 59 25125617 25125709 AGCAGGAGATGCTCAAAGG 60 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 3 1 1 61 5 77605864 77605885 GATACAAAGCTAGAGAACTGCA 58 77605096 77605843 TGTCTGGGATCTTGATTTCC 57 NA DesignNoJunction Rattus norvegicus 81 Unc13a ENSRNOG00000018452 ENSRNOT00000025162 2 1 1 80 16 20079726 20080337 TTAGCATCACGGTGGTCTG 60 20079664 20079682 CCTGGACGGTGACATAAGG 60 NA Rattus norvegicus 81 Wdr37 ENSRNOG00000016834 ENSRNOT00000022688 1 1 1 80 17 58006223 58006244 ATACGAAGAACTAACAGCTCAG 58 58006282 58010773 CGGTAGTTTAGAATCTTGTCCT 58 NA Rattus norvegicus 81 Krt80 ENSRNOG00000025994 ENSRNOT00000029697 1 1 1 80 7 143004523 143004542 ACTGGAAACCAAACTCAAGG 58 142998276 143004481 GTAAGGTCTTTCAGCTCCTG 58 NA Rattus norvegicus 81 LOC679894 ENSRNOG00000042340 ENSRNOT00000061664 3 1 1 60 14 6582806 6582827 AGAGAATGTTAAAGGAGGAGAG 57 6582767 6582787 GGAAACAGGTGATTTCAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Musk ENSRNOG00000033567 ENSRNOT00000048457 3 1 1 80 5 75448147 75462929 GGAAATGCTGTTTCTTCAGG 57 75462971 75462990 TGTGATAAAGAGCTGGAGTC 57 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914,ENSRNOT00000076173,ENSRNOT00000076432,ENSRNOT00000076849 1 6 6 60 14 44526419 44526437 TGTGTATGCTCACTTCCCT 58 44526461 44526479 GATTTCAACCAGAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017006.1 ENSRNOG00000049239 ENSRNOT00000072599 2 1 1 80 15 5907466 5907484 GATTGCACTGGAAGAGTCC 58 5907528 5907730 AATCCTCCAGTTTCGTGGA 59 NA Rattus norvegicus 81 AABR07017006.1 ENSRNOG00000049239 ENSRNOT00000072599 3 1 1 81 15 5907466 5907484 GATTGCACTGGAAGAGTCC 58 5907529 5907731 CAATCCTCCAGTTTCGTGG 59 NA Rattus norvegicus 81 Glod4 ENSRNOG00000007788 ENSRNOT00000010386 2 1 1 80 10 64392510 64394082 GGCAATGACTTCATGGGAC 59 64392448 64392466 TTTACTGAGTGGCCACTCC 59 NA Rattus norvegicus 81 Wdr53 ENSRNOG00000001754 ENSRNOT00000002392 1 1 1 80 11 71788068 71791782 GGATATGCAGGTAATGCTGTG 59 71788008 71788027 TCCTCTGTTTCATCCTCCTG 59 NA Rattus norvegicus 81 RGD1561282 ENSRNOG00000043071 ENSRNOT00000066837 1 1 1 116 3 177164472 177165902 GAGAGGCCTATGGTACCTC 58 177165982 177166000 GAGTACCTCCTGGACACTG 59 NA InUTR Rattus norvegicus 81 Rn60_14_0866.3 ENSRNOG00000026873 ENSRNOT00000037005 1 1 1 60 14 85893332 85893353 CGTATTTAGATTCAGAACCCAC 57 85893293 85893312 ATAGATCATGCCAAAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 2 2 2 88 10 105157114 105157132 GCAAGGCTGTTCATTTCCT 59 105157184 105158209 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 LOC100360056 ENSRNOG00000031802 ENSRNOT00000051411 3 1 1 60 1 141218105 141218126 GCTTTATTAAGAAGGTCTGGGT 58 141218147 141218165 ATTTCCTGGTAAACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661,ENSRNOT00000005637 2 2 2 80 6 54561928 54561947 ATGACCTTTCAAGTGTGACG 59 54561988 54566985 CATGATCATTACAAACGCCAG 58 NA Rattus norvegicus 81 Tas2r110 ENSRNOG00000050637 ENSRNOT00000040860 1 1 1 60 4 167130749 167130767 GCCCGCATTTGATTATGAG 57 167130707 167130725 TTCACCACCCAGATAACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466,ENSRNOT00000011732 1 2 2 80 7 143185977 143187022 CATTGATAAGGTAAGGTTTCTGGAG 60 143185921 143185940 GCACATTTCTGGTCTTGGAG 59 NA Rattus norvegicus 81 Fam183b ENSRNOG00000002873 ENSRNOT00000003841 1 1 1 80 10 44736737 44740330 CCACATCCCTTGATCAACC 58 44736675 44736696 TTTGTACAGAGTGATGTCATGG 59 NA Rattus norvegicus 81 Rn60_4_0553.2 ENSRNOG00000007658 ENSRNOT00000010055 3 1 1 60 4 55539611 55539631 GAAGTCCACTGAACTGATTCG 59 55539653 55539671 CTGAGCAATTTCTCGCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr85 ENSRNOG00000024636 ENSRNOT00000039005 2 1 1 185 4 40384295 40385270 CAGCATATTCCAGATATTCTGATGG 60 40384134 40384156 CATAGATGGATGGAGGATAAGGA 59 NA InUTR Rattus norvegicus 81 Srl ENSRNOG00000005269 ENSRNOT00000048687 2 1 1 80 10 11278071 11281208 AAGCAACAAGAAAGAGGTTACC 59 11281247 11281267 AAAGACAACGAAGATGAGGTC 58 NA Rattus norvegicus 81 Olr757 ENSRNOG00000032386 ENSRNOT00000041799 2 1 1 60 3 102630306 102630326 TTGCATGACTCAGATATGCTC 58 102630348 102630366 TATGAGCAGCACCATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323,ENSRNOT00000040701 3 2 2 92 2 60956297 60956316 CTACACAACCTACAAGACCG 58 60956370 60960587 AGTCCAAGTCCTTTAAGCAG 58 NA Rattus norvegicus 81 Fgf21 ENSRNOG00000020990 ENSRNOT00000028490 3 1 1 80 1 101596481 101596596 GCAGTCCAGAAAGTCTCCT 59 101596419 101596439 GAAACCTAGAGGCTTTGACAC 59 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 3 1 1 159 12 13734618 13736158 CTGCAGAAGGACTACCAGG 60 13736281 13736299 ACAAGTTCACCTTCACCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617,ENSRNOT00000043661 1 2 2 81 3 9422204 9427786 GAAGACCCTGAAGGAGGAC 59 9422141 9422160 GTTAGGGTGCTTGATCTCCT 59 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000049611 ENSRNOT00000072284 2 1 1 60 4 1602421 1602442 TTATGTACCTAAAGCCCTCCTC 59 1602462 1602481 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prps1 ENSRNOG00000060262 ENSRNOT00000078582 1 1 1 80 X 111809222 111811308 ATAAGAAGGATAAGAGCCGGG 59 111811349 111811368 TAATATGATCCGCACCTGCT 59 NA Rattus norvegicus 81 Tomm6 ENSRNOG00000046316 ENSRNOT00000070805 3 1 1 89 9 15313570 15313588 GAACTCCGAGGTTCCAGAC 60 15313640 15314347 ATCAAGTTCCTCCGGAAGTC 60 NA Rattus norvegicus 81 Spata25 ENSRNOG00000015744 ENSRNOT00000021143 2 1 1 69 3 161294038 161294056 ACTCATCTGGGTCTTCTGC 59 161293617 161293635 TATAGAGGCCAAGGGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Rbm48 ENSRNOG00000008980 ENSRNOT00000012086 2 1 1 82 4 27699126 27701149 ACAAAGTGCAAGGATAGCT 57 27701195 27701213 ATTCTGGAGCATAGCACAC 58 NA Rattus norvegicus 81 Sgms2 ENSRNOG00000011284 ENSRNOT00000015020 1 1 1 80 2 236472548 236477614 CTGAGATACAAGTCAATAGTGGG 59 236472490 236472514 GTACATAGTTATACAGCGATACAGG 59 NA Rattus norvegicus 81 Appl1 ENSRNOG00000013574 ENSRNOT00000018413 3 1 1 80 16 2580000 2580019 AGTCTGCTCTAGAAGCTGTC 59 2579074 2579957 GTCGAGATTGTCCTCCTGG 60 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310,ENSRNOT00000076383 1 2 2 60 12 11247467 11247486 GCTCATTGACATTGAGAACC 57 11247506 11247527 CAGTTGTGTCACCTTCTTAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r109 ENSRNOG00000032724 ENSRNOT00000045376 2 1 1 60 4 166993820 166993840 TTAACCAAATCCTCACCACCT 59 166993861 166993880 AATAGCATGAACCAGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 3 1 1 176 12 18520757 18521016 GATGGCTGCTGTTCAAGAC 59 18521156 18521174 GTCTACAAGACTCTGCCCA 59 NA DesignNoJunction Rattus norvegicus 81 L3mbtl3 ENSRNOG00000011720 ENSRNOT00000061404 3 1 1 80 1 20093183 20093201 GCTTCTTCCAACTGTTGCT 59 20093241 20093525 CTCTGAATGAATTCTGACACCTC 59 NA Rattus norvegicus 81 Abcc6 ENSRNOG00000028781 ENSRNOT00000042115 1 1 1 80 1 101961196 101961214 TGGTTTGCACAGTGTACAG 58 101960828 101961153 ATCCATGACTAGAACCCTGG 59 NA Rattus norvegicus 81 Olr784 ENSRNOG00000050402 ENSRNOT00000074456 3 1 1 60 3 103217276 103217297 GCACCCAAGATGATTTATGACC 60 103217237 103217258 TACAACCTCCAAATGAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcart1 ENSRNOG00000039278 ENSRNOT00000088375 3 1 1 60 5 61123765 61123784 TAAGGAGCATCTGCCTACTG 59 61123724 61123743 ACAGATGAAGTCGTTGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 2 2 2 78 1 173730217 173730235 GCTTTCGAGATGGTGATGC 59 173728592 173730176 ATCTCTGATTGCAGAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837,ENSRNOT00000064477 1 2 2 80 17 10497042 10497061 GACCTCATCAACCAGTTGAC 59 10493571 10497000 CCTTTCTTCCCTTTCTAGGC 58 NA Rattus norvegicus 81 Ebag9 ENSRNOG00000004220 ENSRNOT00000005705 3 1 1 80 7 83569545 83572528 TAATATGCAGATCTGGCAGAGG 60 83572565 83572587 GGACAGACGAATAATCAACTGTG 60 NA Rattus norvegicus 81 Olr807 ENSRNOG00000032535 ENSRNOT00000048423 2 1 1 60 4 72240574 72240598 CCTAGTTCTCTTATCCTATATCCAG 57 72240613 72240634 CTCTGTGGACTGTATCTTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Best2 ENSRNOG00000003737 ENSRNOT00000067600 3 1 1 80 19 26126960 26126978 TCCTTCGTTCTGTTAGCAC 58 26126820 26126916 CTCGGGTCATAAATCCAGC 58 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663,ENSRNOT00000086030 2 2 2 80 20 28762792 28762813 GATGAAGCAGATGTTTGTACAG 58 28757680 28762751 AATTTGGCCTGAAGCTCTC 58 NA Rattus norvegicus 81 Plch1 ENSRNOG00000009955 ENSRNOT00000057724 3 1 1 80 2 154312647 154314562 TCCTCGGTATAGAAGGTTTCAC 59 154312588 154312609 GGTATACTTCATGGTGCAAAGG 60 NA Rattus norvegicus 81 Glyctk ENSRNOG00000046307 ENSRNOT00000074595 3 1 1 81 8 114849744 114850351 TTGTGCTCATCTCAGGTGG 60 114849681 114849699 GTGAGCGTCTGTTTCTCCT 60 NA Rattus norvegicus 81 Tsr3 ENSRNOG00000017858 ENSRNOT00000068336 3 1 1 99 10 14599656 14599782 GAGGAGAACATCGATCCCT 58 14600072 14600090 TGTCATCCGTGTCCATAGG 59 NA Rattus norvegicus 81 RGD1306519 ENSRNOG00000024928 ENSRNOT00000055648 2 1 1 80 2 228663131 228663549 GCAATTCTGGATATGTTCTCAC 58 228663072 228663093 TGACATATTGGTTGATAGCCTG 58 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 1 2 2 80 17 54036108 54036128 CTTGCCTCATGAATTCATGGA 59 54035537 54036066 AATAGTGCATCGCCTTCCT 59 NA Rattus norvegicus 81 Vwa3a ENSRNOG00000025110 ENSRNOT00000036175 2 1 1 80 1 190713997 190714016 TCCTCTCACCATCAAGTTCC 59 190714058 190714174 AACTTCTTGGCTTTCAGACC 58 NA Rattus norvegicus 81 Ppic ENSRNOG00000017416 ENSRNOT00000023485 2 1 1 81 18 48376465 48376484 CTTCATCACCTTGACCAAGC 59 48372794 48376421 TACCACAGTCATCCCATCC 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000083955 3 1 4 82 7 140400779 140401204 CACATACACTACACGGGCA 60 140400715 140400735 CCAAGTTCTATGACCAGAGGA 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 2 2 2 80 1 48724194 48726151 TGACTGCTACGTTAGGAGG 59 48724132 48724150 TAGAGCTTGTGTAGCCAGG 59 NA Rattus norvegicus 81 Pggt1b ENSRNOG00000003541 ENSRNOT00000004723 2 1 1 80 18 40213328 40213348 TTGGATGTGGTGAACAAAGAC 59 40205169 40213289 CAGATTTGACCTGTCTTCTGTG 59 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000073875 1 1 2 80 2 241308515 241317579 CTTACATAGCTCAAGTGTTCCA 58 241308456 241308475 TCTTAGGGAGACTGTAGCAC 58 NA Rattus norvegicus 81 Cep97 ENSRNOG00000001609 ENSRNOT00000002191 1 1 1 80 11 47169698 47169719 AGAAAGAGATGAAGAACGTGTG 59 47169760 47173566 TGTAGAGCCCTTACCTCGT 60 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 1 2 2 80 17 66212084 66212108 GTCTCTACTTCTCCAATGTAAAGTC 59 66210950 66212049 TCAAGGCATAATCCTCAATCTG 58 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 3 2 2 80 18 40096573 40096591 TCAGGAAGTGCTGAAGGAG 59 40096313 40096534 GTAGCTTTCTGTATTCTGAGATGG 59 NA Rattus norvegicus 81 RGD1562953 ENSRNOG00000033843 ENSRNOT00000041410 3 1 1 60 1 282064555 282064573 ACAGGTGAACTCGGAAGAC 59 282064595 282064615 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.3 ENSRNOG00000051099 ENSRNOT00000075910 2 1 1 60 X 68175197 68175215 ACACTTCCTTCGTTGAGAC 57 68175155 68175176 AGGACTACAAACACTACTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr782 ENSRNOG00000047084 ENSRNOT00000074043 2 1 1 60 3 103171958 103171980 GTTATCTAAAGCCCTTTCCACTC 59 103171920 103171940 CCCAAAGAACAAGATGACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC95210 ENSRNOG00000024780 ENSRNOT00000037371 3 1 1 82 10 102200959 102200977 GAAAGGTGTAGGGAGACGG 60 102201022 102203780 AATCACTCAGGCTCTTCCTC 59 NA InUTR Rattus norvegicus 81 Pgls ENSRNOG00000018326 ENSRNOT00000024827 1 1 1 60 16 20023811 20023830 AGGACTATGCCAGGAAACTG 60 20024310 20024328 AGGTCAAACACAGGGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0674.1 ENSRNOG00000051153 ENSRNOT00000076788 2 1 1 60 X 66474536 66474556 GCACCATAAACTGCTTAGACC 59 66474577 66474596 TCCATGATGCCAAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl6 ENSRNOG00000048949 ENSRNOT00000071270 3 1 1 83 2 234452426 234476258 GTCTTCAGTATATTCGGTGCTC 59 234476302 234476320 ACAAACTGACTGCTTCAGG 58 NA Rattus norvegicus 81 Sdr42e1 ENSRNOG00000051819 ENSRNOT00000079760 1 1 1 80 19 50211241 50220391 CTGTCATCTGCCTCTGTCC 60 50211179 50211198 TAATGAGGACGGTTTCCTCC 59 NA InUTR Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 2 1 1 80 3 9001911 9001930 GTTGTCTCTGCAAGATTGGT 59 9001969 9002521 CCTCAAGATACCTATCAAACACC 59 NA Rattus norvegicus 81 Olr773 ENSRNOG00000048326 ENSRNOT00000071260 2 1 1 60 3 102948526 102948545 GGTTGGACAAATTTCTTGCT 57 102948567 102948586 ATGGCTGGATTTAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt7 ENSRNOG00000011976 ENSRNOT00000034012 3 1 1 83 19 46455888 46458655 GGAGTCTGTCAGAAACAATCTG 59 46458697 46458717 GACAAGTGGGAATATCTGGTC 58 NA Rattus norvegicus 81 Igflr1 ENSRNOG00000020957 ENSRNOT00000028442 1 1 1 80 1 89020577 89020597 TTCTGGAACTCTAACAAGAGG 57 89020639 89020999 CGCAAACTCGTAATCAGGA 58 NA Rattus norvegicus 81 Rn60_7_1412.3 ENSRNOG00000059206 ENSRNOT00000090076 2 1 1 115 7 143369844 143370410 TTCATCAACAAGGTTGCGC 60 143369747 143369765 CATAAACAGGCTCCAGGCT 60 NA Rattus norvegicus 81 Ngly1 ENSRNOG00000006143 ENSRNOT00000008289 1 1 1 80 15 10419686 10422099 TGGGCTTAATAAGCAGAGAC 57 10419625 10419645 ACAAGCTCCACAATTATCCTC 58 NA Rattus norvegicus 81 Cd28 ENSRNOG00000010283 ENSRNOT00000013701 3 1 1 114 9 67566735 67566753 CTCAGACGTCTCCTAAGCT 58 67566829 67571163 TTCCTTCTGCTATTTGTCCAG 58 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000059870 ENSRNOT00000010256 2 1 1 183 4 82214393 82214411 CAACTTCAAGTTCGGACGG 59 82212818 82212837 TATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07004232.1 ENSRNOG00000048904 ENSRNOT00000075481 2 1 1 60 1 131585136 131585154 AACACATGGAAACAACCCT 58 131585094 131585112 GTATCTACCGCTCCTTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076990 3 2 3 85 13 77952926 77954663 GTAATTATGGATGGGATCAGTCAG 59 77952864 77952882 CACATTCTCAGCAGGAACC 59 NA Rattus norvegicus 81 Men1 ENSRNOG00000021054 ENSRNOT00000028592 2 1 1 80 1 221705330 221706190 TTCATCACAGGCACTAAACTG 59 221706231 221706250 ATCTCTGAGACCTAGAGCCT 59 NA Rattus norvegicus 81 Pla2g2a ENSRNOG00000016945 ENSRNOT00000022827 3 1 1 86 5 157284237 157284255 CTGGAGAAACGTGGATGTG 59 157284305 157284894 GTCCTGGTTTGTAGAGCAG 58 NA Rattus norvegicus 81 Ube2e1 ENSRNOG00000008794 ENSRNOT00000011653 3 1 1 80 15 8175744 8175764 ATGAAGGTGGAGTCTTCTTCC 60 8175803 8176468 TTGTACGAAACGTAACCTTTGG 60 NA Rattus norvegicus 81 AABR07051730.1 ENSRNOG00000054128 ENSRNOT00000058331 3 1 1 60 3 20304133 20304154 CCAATTTACAATCTGGTGTCCC 60 20304173 20304193 GAATAATCTGTCCCAGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873,ENSRNOT00000019511 1 2 2 80 16 3020308 3020328 AAAGATTCCCTGATTGACAGC 59 3020370 3023051 AACATGGAGTTTCACACCC 58 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 3 2 6 80 5 47907011 47907031 GCACAAGTTATCCTTCCTCAG 59 47907071 47907162 TGAGCCTCTTCTAACAACCTC 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040,ENSRNOT00000067610 1 2 6 80 5 48012403 48013303 CAAGCACAAGGTCTTCAGC 60 48013346 48013365 AGGATAAGGTCTGAGAAGCC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388,ENSRNOT00000090799 3 2 6 96 5 48007754 48007773 AAAGTCCTCAGGAGTTGCTC 60 48007832 48008872 GTGAGGAGCCTAGAATCGG 59 NA Rattus norvegicus 81 Dda1 ENSRNOG00000039417 ENSRNOT00000060404 2 1 1 103 16 19881161 19881179 AACTTCAGCAGATTCCACG 58 19881323 19883092 GTCACGATGATCTGCTCTG 58 NA Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 1 1 1 60 11 71749985 71750005 GAAACCACAACCCTGATATCC 59 71748536 71749965 CTTGGAGCTTGTTGTCTACTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 2 1 1 60 5 135997109 135997128 GCTCTGAAATTACCACCAGG 59 135997151 135997169 GTCGGGTCTCATCAATGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 3 1 1 60 5 135997108 135997127 GGCTCTGAAATTACCACCAG 59 135997150 135997168 TCGGGTCTCATCAATGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047606.1 ENSRNOG00000032999 ENSRNOT00000046713 2 1 1 80 5 39689179 39689251 CAAGAGTCCAGTGAGACTG 57 39689117 39689137 CTCTAAATCTCCAGAGGTGTG 58 NA Rattus norvegicus 81 Tuba4a ENSRNOG00000003597 ENSRNOT00000004797 3 1 1 80 9 82417012 82417287 GGAGCCTACTGTAATTGATGAG 59 82416953 82416971 TCCTTCCCAGTGATAAGCT 58 NA Rattus norvegicus 81 LOC689968 ENSRNOG00000042265 ENSRNOT00000066536 3 1 1 80 10 31651144 31656927 TCAACCAGGAAGCAATTCG 59 31656969 31656989 CTCACAAGAACTAGAAGCAGC 59 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646,ENSRNOT00000082723 3 5 5 80 4 140536482 140541695 CTGGGAGCTTTCAATGTCTG 59 140541738 140541756 GTAGCCTCTGGTGAAGGTC 60 NA Rattus norvegicus 81 Tmem164 ENSRNOG00000012787 ENSRNOT00000068431 2 1 1 81 X 114016394 114041553 CTACCGTCATCTTCAAGTTACAG 59 114041594 114041612 AGCCGGGTATTTACCACAG 60 NA Rattus norvegicus 81 LOC685563 ENSRNOG00000049069 ENSRNOT00000049147 2 1 1 129 16 68526 69721 ATTTATTTCATCAGGCACTCCC 59 68418 68436 CCTCCACATAGGATGCTGG 60 NA Rattus norvegicus 81 LOC685563 ENSRNOG00000049069 ENSRNOT00000049147 3 1 1 135 16 68526 69721 ATTTATTTCATCAGGCACTCCC 59 68412 68430 TCTTTGCCTCCACATAGGA 58 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527,ENSRNOT00000085042 2 2 2 80 3 8910776 8910795 CACCTACTATGCACAGTGCT 60 8910318 8910455 CCTGGAAATATGGCACCCT 60 NA Rattus norvegicus 81 Cap1 ENSRNOG00000013492 ENSRNOT00000018711 2 1 1 80 5 140561253 140561606 TCAAAGTTCAGGTGATGGGA 59 140561192 140561212 AGTTCTTACTCAGGTAAGCGT 59 NA Rattus norvegicus 81 AABR07055532.1 ENSRNOG00000032529 ENSRNOT00000045741 3 1 1 80 7 5423745 5423766 TCATCTACATCAAACCTTCAGC 59 5423807 5423826 ATGGGTTCAAGGAAGTGGT 59 NA Rattus norvegicus 81 Tex43 ENSRNOG00000023034 ENSRNOT00000039486 2 1 1 85 18 51680897 51680915 AAAGCAAGGGATGATCCCA 59 51680961 51682773 CTTCTGCTTGCTTTAGATTGAC 58 NA Rattus norvegicus 81 Ccne1 ENSRNOG00000014786 ENSRNOT00000020014 2 1 1 80 1 94486983 94487100 GAAGGTCTCAGGTTATCAGTG 58 94486923 94486941 ATCTCCCGGATAACCATGG 59 NA Rattus norvegicus 81 Ccne1 ENSRNOG00000014786 ENSRNOT00000020014 3 1 1 81 1 94486983 94487101 AGAAGGTCTCAGGTTATCAGTG 59 94486923 94486941 ATCTCCCGGATAACCATGG 59 NA Rattus norvegicus 81 Traf2 ENSRNOG00000006238 ENSRNOT00000008253 2 1 1 81 3 2754358 2754376 CTACACTACGAGGTCTGCC 59 2753650 2754313 GGTCCTGAAGCTTCTCCTG 60 NA Rattus norvegicus 81 Spink10 ENSRNOG00000043250 ENSRNOT00000039466 1 1 1 80 18 57978745 57980738 CAAGTCCGTCATAAGCCAG 58 57980778 57980800 CCCACAGACTGGATTAATTTCTC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 2 3 3 81 1 88587104 88587122 ACATGATCCGCAAGTTGGA 60 88587163 88590622 TCTTCATCTTCCAGATAGCTCTG 60 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000029537 ENSRNOT00000041318 3 1 1 80 10 60352570 60405710 CGTTCTGTGAGGACAATATAATCC 60 60352513 60352533 TATAAATGTCAGAGCAGGCCA 59 NA Rattus norvegicus 81 Pm20d2 ENSRNOG00000007755 ENSRNOT00000060914 1 1 1 80 5 48425356 48425377 ATATGGAGAATGGGAAGAAGCT 59 48420767 48425315 AATCAGTGGAGCCTGAAGG 59 NA Rattus norvegicus 81 Vom2r57 ENSRNOG00000026976 ENSRNOT00000047547 1 1 1 80 7 22931532 22931945 TAGATGCATGCAGGTAAATGAC 59 22931473 22931493 CCTTGATTAACAGTCACTGGG 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 2 2 2 80 19 52163518 52167212 ATTGTGGATAAGCCTGAGTG 58 52163457 52163476 CACTGAGGAGTAGGAGAAGG 59 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000043788 2 1 2 80 1 163603470 163604786 AAGTCCTTAGCATCTCAACAG 58 163603410 163603429 GTGCAATTGTTGTTAACCGT 58 NA Rattus norvegicus 81 Hes1 ENSRNOG00000001720 ENSRNOT00000002346 3 1 1 117 11 74315030 74315049 TGCCAGCTGATATAATGGAG 57 74314788 74314951 GGCTTTGATGACTTTCTGTG 57 NA Rattus norvegicus 81 AABR07061378.1 ENSRNOG00000059069 ENSRNOT00000073799 1 1 1 60 4 120040889 120040910 TATCAAGCTGGTTTCAAAGCAC 60 120040850 120040868 TCCACCCTTTGTGTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3r1 ENSRNOG00000043210 ENSRNOT00000067846 3 1 1 80 14 100342079 100355170 AAATGTGCTCACACTTCGA 58 100355214 100355232 AACCAGAGTTGTCCAAGTC 57 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 1 2 2 80 16 18699876 18704782 TCTAAGACTCAGGTAACAGTTCAG 60 18704821 18704839 AGAGATGACGATGGTGTGG 59 NA Rattus norvegicus 81 RGD1564792 ENSRNOG00000040214 ENSRNOT00000061894 2 1 1 67 4 8256686 8256704 GATGACGGTGATCGTTGTC 59 8256735 8256753 AGCCTTGAGACTTCCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490,ENSRNOT00000086297 1 2 2 80 4 116714023 116718284 GAAACTCAAGAACCAGGTGAC 59 116712278 116712299 AGCTCTTCCATTGCTATTACCA 60 NA Rattus norvegicus 81 Rn60_12_0174.2 ENSRNOG00000026725 ENSRNOT00000029631 2 1 1 60 12 15206941 15206959 CATGTTTGTGATGGGTGTG 57 15206981 15207001 ATTGCTGACAATCTTGAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr53 ENSRNOG00000031110 ENSRNOT00000043023 3 1 1 60 1 167970605 167970624 CTCCTATTGCTTCCATCCTG 58 167970564 167970585 ACTGTTGATCTTTGTGTCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298,ENSRNOT00000002030 3 2 3 80 12 25533748 25533767 GACAATTACAGCCTTGCCAC 60 25533203 25533708 TAGGAAAGGTCTCTTTACGACG 60 NA Rattus norvegicus 81 Trit1 ENSRNOG00000014274 ENSRNOT00000019587 3 1 1 80 5 140749644 140750006 GAACGTTTCAGAAGATAGCCAG 60 140750045 140750065 GTCAGGTACTCGTGAAATTCC 59 NA Rattus norvegicus 81 Snurf ENSRNOG00000054391 ENSRNOT00000088874 2 1 1 83 1 195091246 195091264 AACTACTGAACAGCACGTG 58 195087603 195091199 AAGTGACACTCTTGGTTGC 58 NA Rattus norvegicus 81 Chp1 ENSRNOG00000004742 ENSRNOT00000056405 1 1 1 80 3 111371572 111371590 AGGATTCCAGAACTTGCCA 59 111371633 111376174 GTTTACCTGATCCTCTCCCT 58 NA Rattus norvegicus 81 Sez6l2 ENSRNOG00000027098 ENSRNOT00000037405 3 1 1 80 1 198392872 198392892 CAGTCCCTCTACGTAGAACTG 59 198392933 198394806 CTCCTCAAAGGCTTCAAACC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 80 17 5439627 5439645 CTTTCTGCCATTCACACCT 58 5436742 5439586 CATCATAATTGGATGGTCTCCT 58 NA Rattus norvegicus 81 Lrcol1 ENSRNOG00000037466 ENSRNOT00000056712 2 1 1 87 12 52385715 52385733 CAGGACTAGCAACAACCCA 60 52385536 52385665 TACTTCTCCTTCAGGCTTGC 60 NA Rattus norvegicus 81 Prrx2 ENSRNOG00000058329 ENSRNOT00000083251 3 1 1 104 3 9715230 9715248 GCTGGAGCGTGTATTTGAG 59 9715316 9716215 TGGAACCAGACTTGGACAC 60 NA Rattus norvegicus 81 Stambpl1 ENSRNOG00000050224 ENSRNOT00000075598 1 1 1 80 1 252527988 252528008 CGATCTCGCTAACTACTCTCC 60 252528047 252528916 ACCACTAAATTCTGAACAGCAC 59 NA Rattus norvegicus 81 Rn60_X_0712.1 ENSRNOG00000051290 ENSRNOT00000076792 3 1 1 60 X 70234953 70234974 TACCCTCAATGTATCTGTTGTG 58 70234993 70235013 ATCATACTTGGCAGGTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Radil ENSRNOG00000024456 ENSRNOT00000033998 2 1 1 84 12 14154728 14155580 TGCAGTTCTAGAAGGAGACG 59 14155627 14155645 GAAGTCCTCTGTGCTGGAG 60 NA Rattus norvegicus 81 Eya4 ENSRNOG00000016627 ENSRNOT00000022362 1 1 1 80 1 23426068 23430285 GGCTCACAACAGGATTACC 58 23430329 23430347 CCCATAGGTTGATGCTGAG 58 NA Rattus norvegicus 81 RGD1359449 ENSRNOG00000059240 ENSRNOT00000090226 1 1 1 80 7 104507961 104508544 CCAGAGTAGCTATAGCCTTCAG 60 104508585 104508603 ACTGGCTATCTGCTTGGTC 60 NA Rattus norvegicus 81 Olr582 ENSRNOG00000046448 ENSRNOT00000043371 2 1 1 60 3 75835340 75835361 GATACGCAGATCAATGAACTGG 60 75835379 75835400 TAGTGCTCAGTTCAATGAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552619 ENSRNOG00000027803 ENSRNOT00000035759 1 1 1 80 10 41490286 41491076 TTTGTGAGGCACTCATACCT 59 41490225 41490243 TGTTTCCAGGAAGCTCCAG 60 NA Rattus norvegicus 81 Spaca3 ENSRNOG00000006994 ENSRNOT00000009172 1 1 1 91 10 68233195 68233213 ATCTTCCAGATCAGCAGCC 60 68233268 68233688 TTGCTCAACAAATCCGTGC 60 NA Rattus norvegicus 81 Rb1 ENSRNOG00000016029 ENSRNOT00000021752 1 1 1 80 15 55151796 55153379 AATGGCTACATATAGCAGGAG 57 55151736 55151755 AGTACATTCAGAATCCACGG 57 NA Rattus norvegicus 81 Mttp ENSRNOG00000010655 ENSRNOT00000014631 2 1 1 80 2 243399614 243399633 CGTAGGAAAGGACAACTTGG 59 243394207 243399574 GAGTAGAACTCTTTGACCTTCC 58 NA Rattus norvegicus 81 Phb-ps1 ENSRNOG00000006625 ENSRNOT00000008661 1 1 1 60 10 68925877 68925897 CCTCAGAGATCCTCAAGTCAG 59 68925837 68925858 CGCTGGGTAATCAATTCTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps17 ENSRNOG00000019106 ENSRNOT00000025888 2 1 1 80 1 143169002 143169515 AGATAGCCGGCTATGTCAC 59 143168940 143168959 CTTCCTGCAACTTGATGGAG 59 NA Rattus norvegicus 81 Trim65 ENSRNOG00000024145 ENSRNOT00000046026 3 1 1 90 10 104678013 104678031 TAGGGTAATGGTTACCCGG 58 104677673 104677960 GGCTGAACTCTCAATCTGAC 58 NA Rattus norvegicus 81 Bpifc ENSRNOG00000022937 ENSRNOT00000037290 2 1 1 80 7 23878142 23878163 CCTGTATAACTCCTTTGCTGAG 59 23878203 23880417 GCAATGGGACAAAGACTCAC 60 NA Rattus norvegicus 81 Olr40 ENSRNOG00000018541 ENSRNOT00000025003 2 1 1 83 1 167605479 167605497 TTCTACCTGTTGCTTCCGT 59 167605285 167605432 TAACCTTACCAGGTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 2 2 2 80 5 151185783 151185801 GACTATGAGGCCAGGACAG 59 151185842 151187065 GTCATACTCCGTATTGTTCAGG 59 NA Rattus norvegicus 81 Hinfp ENSRNOG00000009499 ENSRNOT00000012868 2 1 1 80 8 48631354 48631626 ATTGCGAGAGTGTCTTCGA 59 48631292 48631310 CAGCTTGGTATTCACAGCA 58 NA Rattus norvegicus 81 Slc39a8 ENSRNOG00000012508 ENSRNOT00000033413 1 1 1 80 2 241030131 241057262 CACTTCAACCAGTGTCTGTC 59 241057305 241057323 GTTCGAGCTGGTTATCTGG 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 2 4 4 80 1 265551479 265551497 AAGTACACATACCCTGCCC 59 265551294 265551437 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 1 2 2 80 12 18704470 18704490 GTACCAACCTTTGCTCTTCAC 60 18704528 18707540 CTTCTTTCTGAACCTTTCAGGAC 60 NA Rattus norvegicus 81 LOC683884 ENSRNOG00000018129 ENSRNOT00000024471 3 1 1 93 1 192046267 192048692 GTGTATGACTAAAGTATCAGATGCC 60 192046198 192046218 CATGCATCCTATGTGGTTCAC 60 NA InUTR Rattus norvegicus 81 Nipal2 ENSRNOG00000005190 ENSRNOT00000006943 3 1 1 80 7 73449682 73449700 GCAACTTCACATACTGGGC 59 73417169 73449641 AAAGGTGAATCTGGTTTCTGTG 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 1 2 2 80 10 109616705 109616723 CCTCCTTGACCAAGTCCAG 60 109616764 109618492 TTAAAGTACAGGTTCTGTTGCC 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000077045 3 1 3 87 X 65081894 65083639 GTCTAAGAGTAGCACTCTGGG 59 65081827 65081845 TCCTTGGTTCCAGAGAAGG 59 NA Rattus norvegicus 81 Olr623 ENSRNOG00000047555 ENSRNOT00000071021 2 1 1 60 3 76518379 76518400 GACATTTGCTATACCTCCTGTG 59 76518340 76518360 TTCTCCTTACAAGCAGATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gatad2a ENSRNOG00000022173 ENSRNOT00000027943 3 1 1 81 16 21263846 21264162 TCCGTACTACAGACTTCCAG 58 21264206 21264224 GTGACTGGCTGAAAGTGTG 59 NA Rattus norvegicus 81 Rhobtb2 ENSRNOG00000017373 ENSRNOT00000023876 1 1 1 80 15 51474134 51474155 AGACCTGGATGATATGAAGCTC 60 51468820 51474093 GTGTACTGCTCTGTGAGGG 60 NA Rattus norvegicus 81 Ppib ENSRNOG00000016781 ENSRNOT00000022828 3 1 1 80 8 71722384 71722402 CCATCGTGTCATCAAGGAC 58 71722445 71724391 CCATAGATGCTCTTTCCTCC 58 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509,ENSRNOT00000004716 3 2 2 80 13 92304489 92304509 AAACTGAAAGAGACCTATGCC 58 92304548 92306168 TAGCAACTTCTCCTCTATCCAG 59 NA Rattus norvegicus 81 Tollip ENSRNOG00000019861 ENSRNOT00000046344 2 1 1 80 1 214833641 214833659 GTGGTATAGCCTGAGTGGG 59 214832426 214833597 GCTGGAAGGGACGTATAGG 59 NA Rattus norvegicus 81 Lrrn3 ENSRNOG00000006368 ENSRNOT00000008655 1 1 1 80 6 61404899 61404917 CTCAACCAAGGAACTGTGC 59 61377056 61404858 GATAGAGGCATTATTCTTGCCT 58 NA InUTR Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 1 2 2 80 10 71401901 71405132 ATTGAAAGCCATGCATTGGA 59 71401840 71401858 ATTGGTAATGCCTGCTGTC 58 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 2 2 2 81 15 4891258 4893410 AAATGAAAGAGGGCTTACCTG 58 4893569 4893588 GCAGCTTCATTAAGAACTGC 58 NA Rattus norvegicus 81 Krt79 ENSRNOG00000058340 ENSRNOT00000081518 2 1 1 80 7 143534834 143534956 TGCTTAAGAAGGATGTAGATGC 58 143534775 143534794 CAATCTCTTGGATCAGGCTC 58 NA Rattus norvegicus 81 Hsdl2 ENSRNOG00000016692 ENSRNOT00000059458 2 1 1 80 5 76823795 76823813 ACACATTGGAAACTCCGAC 58 76823855 76826984 ATGCTTTGGATGTAAGGTAGG 58 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000050349 ENSRNOT00000072764 3 1 1 80 17 33035414 33035433 GTGTGAAGAGAAAGCAACAG 57 33035476 33035576 TTCACATCCTCCTTGTCCT 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000000916 ENSRNOT00000001219 3 1 1 80 12 7253520 7253538 TGACAAGGATCTGGTGGAG 59 7253578 7253946 AGATCTGCTATATCATCCCAGTG 59 NA Rattus norvegicus 81 Atad3a ENSRNOG00000018118 ENSRNOT00000045053 2 1 1 80 5 173202070 173202334 TCTTGGAGTCTATCAGGACAG 58 173202010 173202028 CTGTCACTTTGTCCCAGTC 58 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 2 2 2 80 7 27094810 27095466 GGCATTCACTAACCAGTTACC 59 27095508 27095526 TAGGACGTCGTGTAAACCA 58 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 2 2 2 80 15 18664542 18675302 ATCTATTATTGGTACTGGCGG 58 18664482 18664503 GGAGTAACAGAACTGATAGTCC 58 NA Rattus norvegicus 81 Tbx18 ENSRNOG00000010685 ENSRNOT00000014657 1 1 1 80 8 95364103 95369911 AGGAACAGAATGGGTTTGGA 59 95364042 95364063 ATCTTCAAAGGTGAGAGTTCGT 60 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 1 1 1 80 11 70037692 70037713 TAGCAACAGTTATCTGTTCAGC 59 70037753 70039395 GGCGCTTAGTACCATAATCC 58 NA Rattus norvegicus 81 Isca2 ENSRNOG00000012085 ENSRNOT00000016089 3 1 1 80 6 108488977 108488996 GAAACAACGTCCTCCATTCC 59 108489038 108489172 GATTTCCAGAAGCCTCTGGA 60 NA Rattus norvegicus 81 Dpp7 ENSRNOG00000012640 ENSRNOT00000017271 3 1 1 80 3 2569431 2569568 TCACCTAGACCTCAGAGCA 59 2569369 2569387 CGAATGAGGGTAGCTTCCA 59 NA Rattus norvegicus 81 Zfp956 ENSRNOG00000026874 ENSRNOT00000059263 1 1 1 80 4 77632510 77632528 CCTGGATCAAGCAAGAGGA 59 77632571 77633336 GCCATGTTTCTGAGCATAGG 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236,ENSRNOT00000068174 1 2 2 80 17 68502464 68503548 CCATATTGTCGAGAAACCCAC 59 68503587 68503608 ATCAACTTTCTGATGATCTGGG 58 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236,ENSRNOT00000068174 3 2 2 80 17 68506523 68507494 TACTCTTACAGGGATCCAAACTC 59 68507531 68507552 GAACTTTCCAGATTTAGCCCAG 59 NA Rattus norvegicus 81 Gmnc ENSRNOG00000038505 ENSRNOT00000058701 1 1 1 80 11 77241096 77241115 AGTTTCCCTGTTCCTGACTC 59 77241155 77242080 ATCCTGGAGCTGTTTATTTCTG 59 NA Rattus norvegicus 81 RGD1308878 ENSRNOG00000026782 ENSRNOT00000030001 2 1 1 96 5 162509272 162509290 GATCTTTCATCCCAAGGCA 58 162509350 162511597 GTGGTAACTGTCCAAGCTG 59 NA Rattus norvegicus 81 Mfng ENSRNOG00000008133 ENSRNOT00000011079 3 1 1 89 7 119996530 119996548 GGAGTCAAGACTACCTGGG 59 119990751 119996478 GATGAATGTCTGTTGCCTGG 59 NA Rattus norvegicus 81 Cope ENSRNOG00000020178 ENSRNOT00000027381 1 1 1 80 16 20863400 20863419 AAACCGATACTTGTCACAGC 59 20863262 20863357 AAATCGTTCTCCTTGGCCT 59 NA Rattus norvegicus 81 Jmjd6 ENSRNOG00000000250 ENSRNOT00000064671 2 1 1 80 10 105782081 105783236 GACTCAGACTCGGAGTGTG 60 105782019 105782037 CATGCTGCAAGTTCTCCTC 59 NA Rattus norvegicus 81 Ddx27 ENSRNOG00000008081 ENSRNOT00000010806 1 1 1 80 3 163779886 163779906 GATTATCCGAATGTGTTCCCA 58 163779947 163780054 GAAGCCAGATCTTTCACCTC 58 NA Rattus norvegicus 81 Pgp ENSRNOG00000009536 ENSRNOT00000012720 1 1 1 175 10 13836677 13836695 CATGAAGCTTACCAAGGCC 59 13836926 13836944 TAGGCTTCCCGATGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Dars2 ENSRNOG00000002813 ENSRNOT00000003828 1 1 1 80 13 78858055 78859800 TTGCCTTAGGGTTAGACAGAC 60 78857995 78858016 AGGATTTAGGGAAGGCTATGAC 60 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 2 2 2 81 17 58161621 58161639 CTGTCACGCTGAGATTGTG 59 58157787 58161576 TTGATGCTTGCTCAAGTGC 60 NA Rattus norvegicus 81 Psmd6 ENSRNOG00000006751 ENSRNOT00000009249 1 1 1 80 15 12408474 12411510 AGATAGGTGACAAGGAGGG 58 12411554 12411572 TATCTAGTCGGTGACCCAG 58 NA Rattus norvegicus 81 Batf ENSRNOG00000008588 ENSRNOT00000011563 2 1 1 87 6 109562843 109562862 ATTACAACCATGCCTCACAG 58 109562912 109565174 CATCATCGGATGAGTCCTG 58 NA InUTR Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412,ENSRNOT00000091052 1 2 2 80 10 46157304 46159912 ACACATGAGACAGGTCTTGG 60 46157243 46157263 TTCCAGATCACCTGATTACCC 59 NA Rattus norvegicus 81 Fezf2 ENSRNOG00000009206 ENSRNOT00000012452 2 1 1 135 15 12829067 12829085 AGGTGCTGAAGGAGAACTC 59 12829184 12829555 TGAGCATTGAACACCTTGC 59 NA Rattus norvegicus 81 Ndufc2 ENSRNOG00000012383 ENSRNOT00000016509 2 1 1 102 1 162370032 162375110 ATGAAAGCAGGTTTGCATCG 60 162375175 162375193 GGTCCCTCACAGCATACAG 60 NA Rattus norvegicus 81 Olr201 ENSRNOG00000017387 ENSRNOT00000023349 3 1 1 60 1 170174746 170174767 TCAATATCTGGTATGGCTTCTC 58 170174707 170174725 ATGAGGGCAACATCTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 2 1 1 80 1 219978394 219978414 ACAACAAGGAGAAGAAGTCAG 58 219978455 219978617 CATTGACATTGGGATACCCT 57 NA Rattus norvegicus 81 Rn60_12_0203.4 ENSRNOG00000058453 ENSRNOT00000089017 2 1 1 60 12 18254310 18254331 CTCCTGTCACCATATCTAATCC 58 18254271 18254292 GTTTCTAAAGAGGTAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3rf3 ENSRNOG00000046791 ENSRNOT00000072485 2 1 1 83 20 28652352 28662876 CTCAACATGTACCTGGCTC 58 28662923 28662941 TACACGGTACATCTCACCC 59 NA Rattus norvegicus 81 Tmed10 ENSRNOG00000007901 ENSRNOT00000010512 3 1 1 81 6 109171158 109171182 CCTTTCAGAGTCTATTGTTAACGAC 60 109170478 109171119 GTTTGTGGACTCGTTGGTG 59 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076101 1 1 2 80 12 28912971 28912989 TGGTGAAATTGGTCTGCTG 58 28913032 28971114 CAGAGCCATACCTTGATTCC 58 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 1 2 2 80 20 27717879 27717898 TTGACATCAACCACTTTGGC 59 27714549 27717836 TTTGAAACCCTGGCAAGAC 59 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 1 2 2 80 6 80092386 80092406 CTGTACCACAAGGAAAGAGAC 58 80086866 80092344 GGAACGTACACTCAAGCAG 59 NA Rattus norvegicus 81 Eif3b ENSRNOG00000001253 ENSRNOT00000060444 1 1 1 80 12 16301272 16301291 AAGTTCAAGCAGATCCAGAG 58 16298829 16301230 AGTCACCAGGTATCTTTCAC 57 NA Rattus norvegicus 81 Smyd2 ENSRNOG00000003583 ENSRNOT00000004783 1 1 1 80 13 108678741 108678759 GTGACCTACAAAGGTACCC 57 108678801 108680570 GATATAGCTGGTGAACACCTC 58 NA Rattus norvegicus 81 Ankrd45 ENSRNOG00000002890 ENSRNOT00000003857 1 1 1 85 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983096 78983114 AACATCCAGTTCCACCAGG 60 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 2 1 1 70 14 86690148 86694865 GAGTACCTCACAGCTGAGG 59 86690096 86690115 GTGATGCGCTTTACTTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262,ENSRNOT00000089538 2 2 2 80 10 66919914 66919932 ATCACTGCCAACCTTAACC 58 66919975 66928043 GTTCTCCTTGTCGATTCCTG 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 1 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133601 100134529 TGGTAATTGTTGCTAGAGCAG 59 NA Rattus norvegicus 81 Scarb2 ENSRNOG00000002225 ENSRNOT00000003052 3 1 1 80 14 17098944 17100996 TATTCCTCTGTTGACTGTTGTG 58 17101036 17101055 TGATAAGCTTTCAGCATGGC 59 NA Rattus norvegicus 81 Fut9 ENSRNOG00000008475 ENSRNOT00000011393 3 1 1 126 5 40131988 40237348 GCTGGGATCGATTTAGAATGTG 60 40034636 40034655 AATGCCTTTGGATGTTGAGG 59 NA InUTR Rattus norvegicus 81 Cd209f ENSRNOG00000042317 ENSRNOT00000064859 2 1 1 80 12 2658921 2659309 CTTAAACTCAGCTTCTGGAAAGAG 60 2658864 2658887 CCATTTATCTTCTGCTATGACCAC 60 NA Rattus norvegicus 81 Bcdin3d ENSRNOG00000058430 ENSRNOT00000091538 1 1 1 98 7 141136482 141136500 CTTCGACAGCTCTTCCCTC 60 141133061 141133081 TTTATACAGAGCCATGCTCAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07073181.1 ENSRNOG00000021437 ENSRNOT00000039341 3 1 1 80 5 155861458 155861476 TCTTCCTTCCACAACCTCC 59 155861519 155861645 GTAGGATGTCACCTTGTCCC 60 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197 1 1 2 105 12 2201970 2202150 CTGCCACGTACTTAACAGGA 60 2202218 2202236 ATCCATGGGACACAGTGAC 59 NA InUTR Rattus norvegicus 81 Ctcf ENSRNOG00000017674 ENSRNOT00000023853 2 1 1 80 19 37638493 37641888 AAGTGATTTGGGTGTCCAC 58 37641932 37641950 AACACAGCATCACAGTAGC 58 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 1 2 2 118 7 75578734 75579367 CAAGAAAGGAATTGTGGACCAG 60 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 1 2 2 80 1 196858128 196858147 AAGTACTTCCAGTCTACCGC 59 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Ptprn ENSRNOG00000019587 ENSRNOT00000026654 2 1 1 80 9 82451236 82451254 GGAGGATGGTGTCAAACAG 58 82450925 82451193 ACCAGGTTCACCTCATAGAC 59 NA Rattus norvegicus 81 Triqk ENSRNOG00000039924 ENSRNOT00000061328 3 1 1 94 5 26559819 26565288 TCGGCATAAAGGAGGTTGG 60 26565345 26565364 GATATTCGTGGACAGTCGGA 59 NA Rattus norvegicus 81 Zc3h4 ENSRNOG00000015229 ENSRNOT00000020509 2 1 1 80 1 78378419 78382289 GAGCTCCTAGATAAGATGTTGG 58 78382329 78382348 CTGCTTCTTCAACTCTTCCA 58 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 1 1 1 80 5 131273077 131273099 TCAGTCATGTAGAAGATGATGGG 60 131273139 131275164 CCTCCGGTCTCTTGATGTG 60 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 3 1 1 80 5 131290468 131305094 TAGACAATGGCAAGGTCCA 59 131305137 131305156 CTCCTTGGGTAACTTGTAGC 58 NA Rattus norvegicus 81 Rn60_X_0677.1 ENSRNOG00000051129 ENSRNOT00000075885 1 1 1 60 X 66837254 66837273 TTCTTAGACCTCGTGAAGCC 60 66837213 66837231 TGATGTTCACCTGCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 1 1 1 60 3 44806547 44806569 CTAATAGAACCATGAGACCTGAC 58 44806586 44814672 CTAACATACACAGACCGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 3 1 1 78 10 110699716 110699735 CAAGCAGAACAGAGTCTCCA 60 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp512b ENSRNOG00000015558 ENSRNOT00000020873 2 1 1 80 3 177082316 177082334 GTGTCCCAAAGAGTTCAGC 59 177081686 177082273 GAAGTCCGGAACCAATTCTC 59 NA Rattus norvegicus 81 Zfp512b ENSRNOG00000015558 ENSRNOT00000020873 3 1 1 81 3 177084813 177084922 GTCACAAGTTGCAGGAAGC 60 177084750 177084768 ATGGTGTGGTAGTTGAGGC 60 NA Rattus norvegicus 81 Miip ENSRNOG00000024139 ENSRNOT00000035695 3 1 1 80 5 164674762 164674781 GCCTACTTCTCTATGCTGCA 60 164674620 164674719 TGGGAATACAGCTTCAGGG 59 NA Rattus norvegicus 81 LOC100909722 ENSRNOG00000050844 ENSRNOT00000073999 1 1 1 128 3 9373345 9377046 TCGCCTCATTCAGCTTCTC 60 9377138 9377156 TGAAGGTCAGCCTTGACTC 59 NA Rattus norvegicus 81 Sntn ENSRNOG00000027383 ENSRNOT00000039347 1 1 1 60 15 14501957 14501976 CCAAGAATCTGCTTCAAACC 57 14498631 14498649 TTTGGCTTGGTTTCCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Btnl7 ENSRNOG00000050170 ENSRNOT00000073990 2 1 1 80 20 2761309 2761328 TTCATTTACAGCCTGGAGGA 59 2757789 2758151 TCCAGAGTGAAAGTCCAGG 59 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 2 1 1 80 2 88128970 88129745 AAGACTAAGGGCAAGGAGG 59 88128908 88128926 GTAGGTCCAATAGTCCCGG 59 NA Rattus norvegicus 81 LOC100360573 ENSRNOG00000020093 ENSRNOT00000027225 3 1 1 114 19 38619880 38620034 CAAAGCCTTAGACAAGCGC 60 38620110 38620130 TATCAGGTTGATCTGGTGCTC 60 NA Rattus norvegicus 81 Rsf1 ENSRNOG00000024194 ENSRNOT00000037050 2 1 1 80 1 162660618 162661681 AGACTCTGAAAGTGACTTTAGC 58 162661721 162661740 TTCTGGTTCCTTCTTGATCG 58 NA Rattus norvegicus 81 Tp53bp1 ENSRNOG00000013837 ENSRNOT00000019025 2 1 1 80 3 113211367 113212899 AATCTACCACTTGTAAGGTCTG 58 113211308 113211326 TACCTGCTCCTTTGTTTCC 57 NA Rattus norvegicus 81 Plxnc1 ENSRNOG00000007970 ENSRNOT00000011178 3 1 1 80 7 35967450 35967469 GTTCTACAAGCTCGTTCCTC 58 35963455 35967410 ACTTGAATTCTTCTCACCTCCT 59 NA Rattus norvegicus 81 Olr551 ENSRNOG00000050825 ENSRNOT00000049273 3 1 1 60 3 74990289 74990310 CCTCTAATTTACAGCCTGAGGA 59 74990250 74990270 TACAAATTGACCTCTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk3 ENSRNOG00000053583 ENSRNOT00000087625 3 1 1 80 1 198197424 198197442 ACTACCTACAGTCTCTGCC 58 198197486 198197661 GGTCAAGAGCTTTGGAGTC 58 NA Rattus norvegicus 81 Nxph2 ENSRNOG00000040333 ENSRNOT00000062080 3 1 1 60 3 307400 307421 CAGCATATGCAGACAATTTGGA 60 307440 307460 TGAATCTCTGTTCTGTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx1 ENSRNOG00000017029 ENSRNOT00000022960 1 1 1 80 8 71761977 71761996 CACTGATCCTGAGAAGATCG 58 71755121 71757960 AACATCGGTAAGCTTGTCTG 58 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 1 3 3 80 4 155561269 155561288 GTTACTGTTGCCACAATCGG 60 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 3 3 3 81 4 155561270 155561289 TGTTACTGTTGCCACAATCG 59 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 3 2 2 80 5 173344852 173344870 CACCAACAGGCTCTTTGTG 59 173344913 173345156 TGCAGACATTCCGAAATGAC 59 NA Rattus norvegicus 81 Olr987 ENSRNOG00000050676 ENSRNOT00000048882 2 1 1 60 4 13565380 13565400 TGGGTAACTGGTTTCTTAGTC 57 13565340 13565359 AGAAATCCAGTTTGAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp27a1 ENSRNOG00000017188 ENSRNOT00000023152 2 1 1 80 9 81995672 81995692 GAATTGCTCAGTCCTCAAGAG 59 81995732 81996994 CAGTGTATTGGATGTCGTGTC 59 NA Rattus norvegicus 81 Scnn1b ENSRNOG00000030981 ENSRNOT00000067138 3 1 1 80 1 191880034 191880054 GTCACTACTTGTACCCTTTGC 59 191880096 191881070 TTAGGTAGCAGTAGGCCCA 60 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 1 1 1 66 X 72650456 72650761 GAAGAAGGAGTTCGCACTG 59 72650791 72650809 GAGTTGCTGTGTCAACCTG 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r14 ENSRNOG00000052260 ENSRNOT00000092184 3 1 1 60 1 60281050 60281068 TTGAGTGTCTTCCAAGCCA 59 60281008 60281030 CTTTAAGACCATTAAGGCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559999 ENSRNOG00000048778 ENSRNOT00000051054 1 1 1 84 14 15707506 15708295 AATCAAGTCCTAGGGTGCC 59 15707440 15707460 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Dcun1d5 ENSRNOG00000008390 ENSRNOT00000061916 3 1 1 80 8 5439007 5439025 CTGCTAGACTCATCAGTGG 57 5439069 5442677 CATCAGGACCTGCATACTC 57 NA Rattus norvegicus 81 Whamm ENSRNOG00000028113 ENSRNOT00000064667 1 1 1 80 1 143426028 143427519 AAGAGCATATAGGGAGAAGGG 59 143427561 143427579 GACAGGTTTGACAGCATGG 59 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000064073 3 1 2 80 5 138482348 138482366 GCCCTTCTTCAACTCAGAG 58 138482408 138485638 GACAGAAATATGCACTTTGCC 58 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000076488 2 1 2 95 5 138504299 138504841 TTACTTGTAGGACACGGGT 58 138504899 138504918 GCAGTCTCTGGTTTCTATCC 58 NA Rattus norvegicus 81 Rmi2 ENSRNOG00000021902 ENSRNOT00000033122 3 1 1 89 10 4905349 4910014 CTGTTCCCAGGAAAGTACGT 60 4905279 4905297 AAGGTCCGTCATCTTCACG 60 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364,ENSRNOT00000089042 2 2 2 80 2 189388150 189391390 AAATCCAGACACGCATTCC 59 189388088 189388108 GATTCAGTTTGTCCACCATCC 59 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907,ENSRNOT00000074811 1 2 2 80 X 85465789 85467457 TGAGGATGTTGAAAGATTCTGG 59 85467498 85467516 CTTGCATAGCAGCACTGTC 59 NA Rattus norvegicus 81 Nenf ENSRNOG00000003833 ENSRNOT00000005190 3 1 1 80 13 109990579 109991744 TCATGACATTTCTGGTCTCAC 58 109990519 109990538 GGGTATTTGGCTTTGTACAC 57 NA Rattus norvegicus 81 Olr577 ENSRNOG00000021658 ENSRNOT00000033519 2 1 1 60 3 75733748 75733766 TGTGACATCTGCTACTCCT 58 75733706 75733727 CTTTAGACAAGAAATCAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox13 ENSRNOG00000028050 ENSRNOT00000035489 1 1 1 80 X 124270904 124274048 CTGAAGTCAAAGTGAAGGTGTG 60 124274087 124274107 TATTTCTCAGCATTGCTCGTC 59 NA Rattus norvegicus 81 Gimd1 ENSRNOG00000042721 ENSRNOT00000064628 1 1 1 80 2 237704806 237704826 GTCCATAGAGCTGATATGCCT 59 237704866 237713509 AGAATCTCCCAGAAGTTCCTG 59 NA Rattus norvegicus 81 Plxdc1 ENSRNOG00000021536 ENSRNOT00000043561 3 1 1 81 10 85904683 85904703 TGGTCTTGTCCTTTGATTTCC 59 85904064 85904640 CCCATGAAGATGAAGCCTC 58 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000020602 ENSRNOT00000027980 1 1 1 80 16 21281868 21281886 CTGATCGAGGACTTGGAGG 59 21281930 21282035 AAGAATCTGCAGGGTCCTG 59 NA Rattus norvegicus 81 Nudt16l1 ENSRNOG00000003224 ENSRNOT00000004314 1 1 1 90 10 10831525 10831624 CAGTACTGATGCAGATGCG 59 10831453 10831471 TTCAAGCCATCCTCCAGTG 60 NA Rattus norvegicus 81 Nppb ENSRNOG00000008141 ENSRNOT00000010779 2 1 1 82 5 164796397 164796637 CAATCCACGATGCAGAAGC 60 164796683 164796701 CCTTGGTCCTTTGAGAGCT 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632,ENSRNOT00000051754 3 2 2 81 7 117470993 117471478 TTTCAGATATCTAAGAGCCTGG 57 117471520 117471538 CTTCAAGCTGAACCTCCAG 58 NA Rattus norvegicus 81 Gcfc2 ENSRNOG00000006888 ENSRNOT00000009104 3 1 1 80 4 112671474 112671493 AGTCAGGAAGATGAAAGCCA 59 112671532 112676125 TATACTTTGTCCCTCTGTGATCC 60 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 3 1 1 80 1 266061916 266062039 CTCTACCTGCAGAAGGAGG 59 266061854 266061872 GTGGTGAATGCTAATGGCG 60 NA Rattus norvegicus 81 Lpgat1 ENSRNOG00000004402 ENSRNOT00000064492 3 1 1 80 13 110462436 110465138 ATAAGACAGGAGCCTTTCCT 58 110465181 110465199 GTATCCACACGTTGCTGAG 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000046594 ENSRNOT00000068050 3 1 1 81 10 105165972 105165991 TATGAGGATCCAGCTCTGAG 58 105165686 105165928 TCAGCTCAGACTTCTCCAG 58 NA Rattus norvegicus 81 RGD1559575 ENSRNOG00000032396 ENSRNOT00000046438 1 1 1 80 10 34234126 34241768 TTGACAAATAAGCATCCTCCAG 59 34234067 34234086 AAGTTGAGCCGTTAAAGGAG 58 NA Rattus norvegicus 81 Cxcl13 ENSRNOG00000024899 ENSRNOT00000039383 2 1 1 83 14 15254244 15254264 AGGCCAAGAAAGCTATATGTG 58 15253930 15254202 AAGTAATACTTCTGCTTCGGAC 58 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 3 1 1 65 1 228142912 228143205 TTCAGATACTTGGGCAGCC 60 228143234 228143252 AAAGTTGGAACTGGGAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Tmem57 ENSRNOG00000056156 ENSRNOT00000079536 1 1 1 80 5 153131020 153131038 AGAAGCTCACAATGGACCT 59 153128114 153130976 TGTACTTCCGAAGCTCCTG 59 NA Rattus norvegicus 81 Stab2 ENSRNOG00000038948 ENSRNOT00000059538 1 1 1 80 7 27422795 27424235 GAACCATCATTACAAGAGCCT 58 27422735 27422753 ACACATTCTGACCTCTCCC 59 NA Rattus norvegicus 81 Atg4a ENSRNOG00000050960 ENSRNOT00000074776 2 1 1 81 X 112377445 112396706 AGAACCAGTGGTATTGCCT 59 112396751 112396769 GTATCAACGAAGGTCTGGG 58 NA Rattus norvegicus 81 Hspb2 ENSRNOG00000010402 ENSRNOT00000013960 2 1 1 66 8 55177753 55177771 CGAATTTGCCAACCCTAGC 60 55177282 55177300 GATCTCTTCTGGCAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr633 ENSRNOG00000049129 ENSRNOT00000040604 2 1 1 60 3 76751996 76752017 GTAATGAGCCAACGTATCTGTG 60 76752037 76752056 GGATACAAGACCCTACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 3 3 3 80 18 56400027 56400276 CTAAGAACTGTGTTCACCGAG 59 56400316 56400336 CAAAGTCACAGATCTTGACCA 58 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000068147 3 1 4 88 1 215109216 215109235 TCTTCTTGCTGTCAGTCCAG 60 215057753 215057771 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000027259 3 1 4 61 1 215411757 215411775 CTGCAAGCCTGTATGTTGC 60 215411714 215411732 TGGAGCAGTTACAGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba1y ENSRNOG00000052326 ENSRNOT00000092178 2 1 1 80 Y 437514 437534 CAAGACTTCACTACCTACTCC 57 437575 443863 TTGCTGTCATCATCCTTCTC 58 NA Rattus norvegicus 81 Phlpp2 ENSRNOG00000016108 ENSRNOT00000021744 2 1 1 80 19 41740516 41741146 AGATTCAGTTTGTTGACCTGAG 59 41740457 41740475 GGTCTTGTAAAGTGGCAGG 59 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 3 3 3 80 1 247245648 247245668 GAAGCAAGCTTTATAAGGCTG 58 247245707 247248481 GTATAAGGTTGTTCCTGTTTGG 57 NA Rattus norvegicus 81 Ifne ENSRNOG00000024204 ENSRNOT00000029976 3 1 1 60 5 107233439 107233457 CCAAGAGGGACATGTACTG 57 107233479 107233499 GAAGAGAACGAAGATCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmg3 ENSRNOG00000001273 ENSRNOT00000001716 2 1 1 100 12 16899706 16899724 GTTAGTCTCCTTGGAGCCC 60 16899788 16901477 AGACATGGATGAGAGGCTC 59 NA Rattus norvegicus 81 Kctd4 ENSRNOG00000050996 ENSRNOT00000075786 2 1 1 60 15 58016649 58016670 ATTACTTCATTGACAGGGATGG 58 58016687 58016709 CCATTTCGTAGGAAGTTTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 3 2 2 80 12 18161176 18161197 CTGAGCTGATCTTCAATTTGGA 59 18161237 18163389 TTTGGAAATCTGGGATGCTC 58 NA Rattus norvegicus 81 Pitx3 ENSRNOG00000019194 ENSRNOT00000026013 3 1 1 82 1 265888918 265888936 GTCATTGTCAGATGCAGGC 59 265888675 265888872 CCTTCTCCGAGTCACTGTG 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 1 4 4 80 5 152682876 152683359 TGGCATCTTCTGATATTCAGGT 59 152683400 152683418 ATCGAGGGCTGAGAATCAG 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373,ENSRNOT00000073428 1 2 2 80 6 111289760 111291061 TGTGGGAAGTATCTCATGGT 58 111289699 111289717 CCCTTCATCTGTTCACGTC 58 NA Rattus norvegicus 81 LOC100125368 ENSRNOG00000043289 ENSRNOT00000031481 2 1 1 81 7 10896371 10896389 TGGATCCTTCCCAGAAGAG 58 10896017 10896329 TCCAATTTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000046227 2 1 2 88 7 118492970 118494185 GATTTGCCAGACAGACTCC 58 118494237 118494255 CAAAGTCAGGAATCTGCCT 57 NA Rattus norvegicus 81 Rps16 ENSRNOG00000019578 ENSRNOT00000026576 3 1 1 80 1 85406079 85406188 AATTTATGCTATCCGGCAGTC 59 85405926 85405946 TCCTTCTTAGAGGCTTCATCC 59 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454,ENSRNOT00000066455 2 2 2 150 1 219863071 219863327 CCTGCTGCTAACTATGATCC 58 219862385 219862403 AACTTGGTTTCGTAGCCAG 58 NA Rattus norvegicus 81 Lacc1 ENSRNOG00000022094 ENSRNOT00000032301 1 1 1 80 15 59214609 59215207 TTTGATCCCAGACATCTTCCT 59 59214549 59214567 TTGAGTGAGCTGAGAGTGG 59 NA Rattus norvegicus 81 Ska1 ENSRNOG00000015275 ENSRNOT00000020637 2 1 1 80 18 70175462 70175483 CATCTATGAGCTCTGTGAAGAG 58 70174936 70175422 TGAAATGACGACCTTTCGTG 59 NA Rattus norvegicus 81 LOC100910858 ENSRNOG00000050271 ENSRNOT00000041690 3 1 1 60 3 77337768 77337787 TTTGCTTCCTGTTCTTCTCC 58 77337810 77337828 AGGATCACCAGATTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000021956 1 1 2 80 9 43134084 43134104 CGGTTATCCTTCGAAACATGG 60 43133931 43134045 CAAAGTGAGGTTCATTCAACCA 60 NA Rattus norvegicus 81 Vom1r98 ENSRNOG00000052138 ENSRNOT00000086882 3 1 1 60 4 121913026 121913044 TTCTCCAAAGGCAACTCCA 59 121913062 121913086 GAAGCTCATAAACATTAGAAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070892.1 ENSRNOG00000000896 ENSRNOT00000001195 1 1 1 91 8 90304378 90304398 CTTACAAGAAACCAGCTTCAC 58 90304487 90304505 TAATTTGCTCTGCAGCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Smek2 ENSRNOG00000003712 ENSRNOT00000005170 3 1 1 80 14 113570575 113570595 GTCTCCTCCACTTACGTAGAG 59 113570635 113571742 CTCCAAGAGTAGAGATCCGTC 59 NA Rattus norvegicus 81 Catsper2 ENSRNOG00000023064 ENSRNOT00000030019 1 1 1 80 3 113363367 113369840 ACAACATGTTCTTCTCGGAC 58 113363306 113363326 GTACTGCATACCAATGATCCA 58 NA Rattus norvegicus 81 AABR07021239.1 ENSRNOG00000025794 ENSRNOT00000033201 2 1 1 60 13 62524468 62524486 TCCGGTCACAAAGATACGA 59 62524426 62524447 CTCATGTTCCTCAGAAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 1 1 1 80 1 53443008 53448573 TTTGGTGTGCTCATGTTCG 59 53448617 53448635 GATGAGGGCCATTGTTTCC 59 NA Rattus norvegicus 81 Nfe2l1 ENSRNOG00000008830 ENSRNOT00000067542 3 1 1 80 10 84689834 84690542 GAAATGCAGGCTATGGAAGTG 60 84689774 84689793 GTTGGTGGTAAGAGGGTCTC 60 NA Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 1 1 1 80 3 3804028 3804831 ATGATCATCGACGCATCAG 58 3803966 3803984 CTGAACCTTCTTCTGCAGC 59 NA Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 3 1 1 80 3 3804028 3804832 CATGATCATCGACGCATCAG 59 3803967 3803985 TGAACCTTCTTCTGCAGCT 59 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 1 3 3 68 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82261079 82261097 TGACTCCCATACACAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Canx ENSRNOG00000003343 ENSRNOT00000049942 1 1 1 80 10 35817003 35818260 CAAATATGACGGAAAGTGGGA 58 35816943 35816963 CGAGACATCAATACAAGTCCT 58 NA Rattus norvegicus 81 Cnot6l ENSRNOG00000002075 ENSRNOT00000002843 2 1 1 80 14 15112196 15121005 TGACAATCTTGCAGTTCATCC 59 15121046 15121065 GATGGCAGAATTTGGTCTCG 59 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 2 2 2 95 12 11779842 11779860 GGAGTTCAGAGCTTAGGCC 60 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA Rattus norvegicus 81 RGD1561114 ENSRNOG00000030956 ENSRNOT00000057099 3 1 1 97 18 41898796 41898814 CTCTTGCTTTCAACGCCTG 60 41898592 41898735 AAGCATTCTCCACCTGGTC 60 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 1 2 2 91 15 20777229 20778251 ATCACGAAGAACATCTGGAG 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 Vom2r49 ENSRNOG00000050003 ENSRNOT00000049498 2 1 1 80 6 56767201 56773915 ACAATGTCCCACAGATCAG 57 56767139 56767158 GAAACTGGTAAGGAGACTGG 58 NA Rattus norvegicus 81 Wnt6 ENSRNOG00000017409 ENSRNOT00000023439 1 1 1 111 9 82043984 82044002 CAGTTCCAGTTCCGTTTCC 59 82044311 82044329 CAGCGGTAATTGCAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Wnt6 ENSRNOG00000017409 ENSRNOT00000023439 2 1 1 115 9 82043980 82043998 ATGTCAGTTCCAGTTCCGT 59 82044311 82044329 CAGCGGTAATTGCAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr527 ENSRNOG00000050009 ENSRNOT00000043964 3 1 1 60 3 74448181 74448200 TCTCTGTGCTGTTTCTCCTG 60 74448140 74448159 AGTATCATGCCTGTGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065265.1 ENSRNOG00000021751 ENSRNOT00000032968 3 1 1 85 6 117972602 117972651 CCATAAATAACTGTAGTGACCAGG 59 117972540 117972558 GAAGCCATCCACATGAACC 59 NA Rattus norvegicus 81 Galnt3 ENSRNOG00000005727 ENSRNOT00000007615 2 1 1 80 3 52194426 52194445 TGTGCTCTATTCTTCACCTG 57 52189861 52194386 TCATGCAAGTAGTCATCTACAC 58 NA Rattus norvegicus 81 Ereg ENSRNOG00000002771 ENSRNOT00000003716 3 1 1 82 14 18578989 18579669 TACTGCAGATGTGAAGTGGG 60 18578926 18578946 TATTCTCTGCTCAAGGGTTGG 60 NA Rattus norvegicus 81 Smu1 ENSRNOG00000007671 ENSRNOT00000010464 2 1 1 80 5 57048869 57050292 GACGGAAAGATCAAGGTTTGG 60 57048809 57048829 GGTGACACCTTTACTATGTGC 59 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738,ENSRNOT00000091681 1 3 3 80 2 196642703 196645444 CAACGTGAAGAACTCTAGCC 59 196645486 196645505 TTAGTTGTCGGACCTAGCTG 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000087940 3 1 2 96 15 70349980 70373803 GCTGACAGATGATATGCTGG 59 70349903 70349921 AGACACAGTCTTCAGCTGG 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334,ENSRNOT00000026394 3 2 2 80 18 55797274 55797292 CTCACAGCTCTACTTCTGC 58 55797334 55800019 CAATAATGAGAGTCCACCTCG 58 NA Rattus norvegicus 81 Celf5 ENSRNOG00000004695 ENSRNOT00000061219 2 1 1 81 7 11116367 11116387 CCTTCGGCAATATCATCTCCT 60 11116430 11116825 TCAAAGCTCACGAATCCGA 59 NA Rattus norvegicus 81 Smarca5 ENSRNOG00000018149 ENSRNOT00000024568 1 1 1 80 19 30951433 30952171 TGCAAAGGGAATGGTATACTC 58 30952211 30952231 GTCTCATCTTGTCCATCTTCC 58 NA Rattus norvegicus 81 Parp9 ENSRNOG00000023463 ENSRNOT00000030975 2 1 1 81 11 67753006 67755754 ATTACACGGGTACAGGAGC 59 67749571 67749593 GGAATTTGCCATCTATGGTAGTG 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 1 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837427 3837448 TCTTCCCTATGTTCTCTACAGG 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 3 2 2 80 9 79957615 79957633 GAAGCTGACCTTTCTGGAG 58 79957677 79959234 TATGGCAAAGCTAACTCCC 57 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000034090,ENSRNOT00000078746 3 2 2 98 14 18839198 18839216 CCTGAAGACCCTACCAAGG 59 18839001 18839138 AGAGTGGCTATGACTTCTGTC 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 3 1 1 70 6 98601673 98605982 TGACGCAGTTCCTGATGAG 60 98601621 98601642 AAACTGGTCCTTAATCTTCTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp574 ENSRNOG00000055761 ENSRNOT00000079847 3 1 1 60 1 81956987 81957005 CTGGCTGTGATGGAAACTG 59 81957028 81957047 GGTAGATCTCAATGGCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 1 2 2 82 7 11239683 11239701 TTGTAGTGGCTGTCAAGCA 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 3 1 1 80 1 165272038 165272675 TTCAGGAGAATGGTCATTGGA 59 165272716 165272735 TCCAGCAATCAAACATCCAC 59 NA Rattus norvegicus 81 Olr862 ENSRNOG00000046223 ENSRNOT00000072067 2 1 1 60 5 137603003 137603023 GTGTCTGTGGTTTCTTCTCTG 59 137602963 137602981 CAATAGGGCAGTCTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr152 ENSRNOG00000017211 ENSRNOT00000023119 2 1 1 60 1 169552879 169552898 GTACAGCACCATTCTGACTC 58 169552921 169552939 CCTCACAATGATGCTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1401 ENSRNOG00000033524 ENSRNOT00000043954 3 1 1 60 10 34805347 34805365 TGATTCAGACAAGCCTCGT 59 34805386 34805407 AAGAAGTGATTCAGTTGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supt7l ENSRNOG00000004927 ENSRNOT00000006543 3 1 1 81 6 26248002 26249530 CATGCTACAGATTAGTAAGCAGC 60 26249570 26249589 AGGCTTAGTGTCTTCTGTGG 60 NA Rattus norvegicus 81 Gpbar1 ENSRNOG00000058260 ENSRNOT00000089698 1 1 1 60 9 81559771 81559790 TACTACTAGCTGGGCTACTC 58 81559813 81559831 CTATTCCATAGCCCAGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859,ENSRNOT00000020705,ENSRNOT00000089142 1 3 3 85 9 90886919 90886937 TGCTCACACTGAGTGAGAG 59 90886986 90891876 AACTGCTCGGATCTCTTCG 60 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000065632,ENSRNOT00000077962 1 3 3 80 1 260577992 260581217 CGATATGATGACAAATCAGAGGG 59 260577934 260577952 GTGAGGTTCTTCAGTCCGT 59 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 2 2 2 82 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220009 106220027 CCACCAGTTTGTTCAACAC 57 NA Rattus norvegicus 81 LOC100909686 ENSRNOG00000046718 ENSRNOT00000072865 1 1 1 60 1 169741866 169741887 CTCTACATAGCCATGTGTTACC 59 169741906 169741926 CGATGACCACATTAGTGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 2 1 1 76 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123034596 123042391 ATAACTGACTCCTCGACTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 2 2 2 80 17 80677906 80678737 CGACATCATCTTGTGGTGG 59 80677844 80677862 TTGGATGGTAGTCTGCTGG 59 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747 1 1 2 80 12 44932747 44933927 GAGTACCATTCAGAAGTTCATCAG 59 44933966 44933984 GATGTCTTTCCTGTGCCTG 59 NA Rattus norvegicus 81 Hs6st2 ENSRNOG00000030880 ENSRNOT00000040165 1 1 1 80 X 138714261 138714279 AACTTCAACTCAGGTGCCA 60 138678480 138714223 GATATAATGGAAGTTCTTCCCACTC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 3 2 2 80 6 111381614 111381632 CATCTGTAGTGTGCCTGGA 59 111379848 111381572 CCTGTGTACTTGAATGACCAG 59 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378,ENSRNOT00000060514 3 2 2 82 15 28487482 28487500 GATGACTCTGCTGAGGAGG 59 28487313 28487437 TCATCCTTCAACTCCAGCTG 60 NA Rattus norvegicus 81 Tet3 ENSRNOG00000011387 ENSRNOT00000015296 3 1 1 80 4 115155679 115155697 ACACCAGATCTGCAAACTC 58 115142092 115155636 CGAGCATTTATTTCCACCTC 57 NA Rattus norvegicus 81 Mir6316 ENSRNOG00000049017 ENSRNOT00000075015 3 1 1 60 1 278298682 278298700 CATGTCTGTCTCTGTGGCA 60 278298721 278298742 GACAGACATGTGAAAGTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr544 ENSRNOG00000031356 ENSRNOT00000051625 2 1 1 60 3 74867788 74867807 TTTATGTACTTGCGTCCCAC 58 74867747 74867767 ACAGAGCAACTACCTTATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000673 1 1 3 80 20 31303053 31303072 ACCACTCTTCTTCACATGCT 59 31303114 31303511 CGTCAGTTCTTCTGAAGTGG 59 NA Rattus norvegicus 81 Pmp2 ENSRNOG00000022707 ENSRNOT00000032059 1 1 1 82 2 93829091 93829112 AGAAGTGGGATGGTAAAGAGAC 60 93829150 93830486 CACACCCTTCATTATACATTCCAC 60 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 1 2 3 232 20 3439933 3439951 ATCTCCACACCATGACTGG 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07061382.1 ENSRNOG00000034129 ENSRNOT00000046568 1 1 1 60 4 120157455 120157473 GCTTGGTGGTTACCTTACG 59 120157413 120157432 GGGTTCAAGTCAGTGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1501 ENSRNOG00000031966 ENSRNOT00000041085 3 1 1 60 10 60728925 60728944 ATTGGCCTCTACTTGTGTCC 60 60728962 60728985 TAGACATGACAGTATCCTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1231 ENSRNOG00000029086 ENSRNOT00000044223 2 1 1 60 4 1471254 1471272 ACATTCTCCCTCTCCTCCA 59 1471295 1471314 AGAACAACCACCTCATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tacr2 ENSRNOG00000050658 ENSRNOT00000071394 1 1 1 80 20 31900743 31901544 AGAAGAAGTTTGTGAAGGCC 58 31901585 31901605 GGATGAAGTAGAGGTGGTAGG 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 2 2 2 80 1 143679964 143681987 CCTCTGTTCTACGTGTATGC 58 143682030 143682048 GATGATGCCATCTTGCTCC 59 NA Rattus norvegicus 81 Rab9b ENSRNOG00000047960 ENSRNOT00000074140 1 1 1 146 X 107536277 107542369 CCATTGTGTTGGAACTCGA 58 107534962 107534980 GAGAAGGGATTTCCCACTC 57 NA InUTR Rattus norvegicus 81 LOC100360137 ENSRNOG00000043400 ENSRNOT00000068441 3 1 1 80 4 79015541 79015561 AAGGAGGAACAGAAGAAACTC 58 79015331 79015502 TTTCTTAATTCCACCTGTAGCC 59 NA Rattus norvegicus 81 Akap17b ENSRNOG00000009746 ENSRNOT00000039809 3 1 1 89 X 123220976 123224708 TGAACTGTCTGGGATCCAC 59 123220905 123220923 ATTTCACTGTGGTCCCTGG 60 NA Rattus norvegicus 81 Smim24 ENSRNOG00000048878 ENSRNOT00000075038 3 1 1 97 7 11183675 11184945 TCAAAGCCAAGTAAAGCAGAC 59 11183598 11183616 TCGTCTGAGAACTCCTCCT 59 NA Rattus norvegicus 81 Slc39a2 ENSRNOG00000010375 ENSRNOT00000013786 2 1 1 80 15 28296050 28296069 AGGGTTGATGCATATGACTG 58 28296111 28296366 CCTGTACTATTCTGCACCAC 58 NA Rattus norvegicus 81 Olr312 ENSRNOG00000050629 ENSRNOT00000072701 2 1 1 60 1 213404427 213404446 GTAACAGAGTTTGTGCTGGA 58 213404467 213404487 CTGCCAGGAACAATCTTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd79a ENSRNOG00000020125 ENSRNOT00000027254 1 1 1 126 1 81765962 81765980 CTTGCTGTTCTGTGCAGTG 60 81767490 81767641 AAGATTCAGGCCCTCATAGAG 59 NA Rattus norvegicus 81 Cd248 ENSRNOG00000020197 ENSRNOT00000027339 2 1 1 60 1 220447463 220447482 GGTGGCTTTGAGTGTTACTG 59 220447502 220447523 TACAACTGATACCATCTGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt1m ENSRNOG00000028841 ENSRNOT00000047663 3 1 1 95 20 3677601 3677619 ACAATGCAAATGCACCTCC 59 3677678 3677696 GAAGCCTCTTTGCAGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl6 ENSRNOG00000002843 ENSRNOT00000003823 1 1 1 82 14 18861777 18861912 CCAAGGTGGAAGTCATAGCT 60 18861714 18861735 GACTTTCTTTATCAACGGAGCT 59 NA Rattus norvegicus 81 RGD1559810 ENSRNOG00000026207 ENSRNOT00000038249 1 1 1 144 20 36060746 36060764 TGAGGGTGACAGTACATGG 59 36060599 36060640 CCAGACACTTGAATCTTTGCT 59 NA Rattus norvegicus 81 Hpx ENSRNOG00000018257 ENSRNOT00000024710 1 1 1 80 1 170430680 170430780 AGATGTAATCGAACACTGCTC 58 170430620 170430639 TTAAAGAACAGCATGGTCCC 58 NA Rattus norvegicus 81 Wnt3a ENSRNOG00000003039 ENSRNOT00000064505 3 1 1 125 10 45627827 45637954 GTTCTTCTCTGGTCCTTGG 58 45627720 45627738 GATCTCCACGTAGTTCCTG 57 NA Rattus norvegicus 81 Trhr2 ENSRNOG00000012789 ENSRNOT00000017317 2 1 1 88 19 55182148 55183524 GAGTCTTCACCAGGTTGGT 59 55182078 55182096 GAGAACCACGGAGTAGCAG 60 NA InUTR Rattus norvegicus 81 Rbm46 ENSRNOG00000025823 ENSRNOT00000035846 3 1 1 84 2 181861692 181861711 CAGATAAACTCTGCACAACG 57 181831428 181861645 CGACGGAAATTGTAGTCCA 58 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 1 3 3 80 11 71361920 71362390 CCATGAAGATGGTGACAGAG 58 71361859 71361878 CCAAGAGGAAATGACCTTGG 59 NA Rattus norvegicus 81 Rps7 ENSRNOG00000008551 ENSRNOT00000011333 3 1 1 90 6 47899989 47900007 GGATCCGTGTGAAACTGGA 60 47899625 47899936 AAAGTTTCGACCTTGTGCTC 59 NA Rattus norvegicus 81 Crebzf ENSRNOG00000018987 ENSRNOT00000025653 3 1 1 93 1 156294991 156295009 AAGGATAAGGTGTCGGTGG 59 156294705 156294723 GGCAGGAAGGAAATCACCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lyrm1 ENSRNOG00000024530 ENSRNOT00000033673 2 1 1 104 1 189683305 189684960 CCAGACCGATCCATCTACC 59 189685025 189685046 ACTTCAGATACAGTGGTTTGGA 60 NA Rattus norvegicus 81 Megf8 ENSRNOG00000052687 ENSRNOT00000077313 1 1 1 80 1 82213571 82213590 GGACCTGATGCTACTTTGTG 59 82213627 82214217 GACTGAATACCTATACAAGTTTCCC 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000037086 2 1 3 80 1 79032523 79035425 TTGTACCTCTATGTGTACACCTC 59 79035463 79035483 CGGCACTGATTCAATAGTGAG 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000037086 3 1 3 80 1 79032524 79035425 TGTACCTCTATGTGTACACCTC 59 79035465 79035484 GCGGCACTGATTCAATAGTG 60 NA Rattus norvegicus 81 Mcm10 ENSRNOG00000017981 ENSRNOT00000024178 1 1 1 80 17 77231442 77231460 GCAAGGGACTGTCATAGGG 60 77231502 77234284 TCGATAGATAAGCACACCTCC 59 NA Rattus norvegicus 81 Ctcfl ENSRNOG00000028661 ENSRNOT00000034131 1 1 1 93 3 171145692 171146269 TGACAAAGGAGAACCTCGG 59 171145617 171145635 GGTAAGGCCTTGATCTGGG 60 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 2 1 2 60 15 28023066 28034119 TTTGCACTTTCTAGGTGACG 59 28034142 28034160 AACAAGAGCAGAAGCAAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910921 ENSRNOG00000045694 ENSRNOT00000071001 3 1 1 60 3 74906261 74906279 GTTGCCATCAAACACAGGA 59 74906219 74906241 AACTATAAGGTGGGAAGAACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr828 ENSRNOG00000048689 ENSRNOT00000051285 2 1 1 60 4 148624167 148624186 GCAAGCCTCTACATTATCCA 58 148624208 148624227 ACAGTAACGAGAAGGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn2 ENSRNOG00000017453 ENSRNOT00000023763 3 1 1 80 18 63427800 63432289 ATACCTGTCTCGTTCTGATGG 59 63427740 63427764 CCATTCGATACTTTCTCATACTCAG 59 NA Rattus norvegicus 81 Faslg ENSRNOG00000002978 ENSRNOT00000003998 1 1 1 88 13 79704603 79705307 CAGAACTCCGTGAGTTCAC 58 79700587 79700605 TTTGGTTTCAGAGGGTGTG 58 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000046643 ENSRNOT00000073099 3 1 1 80 12 19088255 19088274 CTTTGCTCTTCACAAAGACC 57 19075886 19088215 TCCTGATTCTTCTTGTTGTACC 58 NA Rattus norvegicus 81 Olr1589 ENSRNOG00000022387 ENSRNOT00000030794 1 1 1 60 13 92168379 92168400 CTGTGGTTCTCATCTTCTATGG 58 92168421 92168439 TAACTCTTCTTCAGCCGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1593 ENSRNOG00000003521 ENSRNOT00000004674 3 1 1 60 13 92225285 92225304 TTCGCTTGGAAATTCAGAGG 59 92225324 92225345 AGCAATGTATCTGTCAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias4 ENSRNOG00000020230 ENSRNOT00000027441 1 1 1 80 7 11423530 11423768 CAGGTGGTACTGAGGATCTG 59 11423810 11423829 GACTTTCACAGCGATGTTGG 60 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457,ENSRNOT00000066268 3 2 2 80 5 147265331 147267759 TACAGCCGGTTAGAAGTTCAG 60 147267800 147267819 GTCACTAATTGCACCAAGGC 60 NA Rattus norvegicus 81 AABR07006055.1 ENSRNOG00000024991 ENSRNOT00000034299 2 1 1 124 1 215363190 215363262 CAAGCCTGTTTGCTGTCAG 60 215363084 215363102 GCTTACAACAGCTGGACTG 59 NA Rattus norvegicus 81 Lpar6 ENSRNOG00000015577 ENSRNOT00000021430 2 1 1 60 15 55128439 55128458 TCACTTCAGACACGATCCAG 60 55128479 55128499 TCACTCCTTCTAACAGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tppp2 ENSRNOG00000025473 ENSRNOT00000048723 1 1 1 80 15 28319277 28319296 AAAGACTGTGGCATCATGGA 60 28319336 28320074 ATTCTTGGCCTTCACTTTACTG 59 NA Rattus norvegicus 81 AABR07019102.1 ENSRNOG00000032106 ENSRNOT00000051173 2 1 1 80 15 89348087 89348108 GGCTATGATGTTGAAGACCAG 59 89348027 89348047 CAGTCTCATTACGCATGATCC 59 NA Rattus norvegicus 81 Olr659 ENSRNOG00000048520 ENSRNOT00000047910 3 1 1 60 3 77415093 77415113 TCTATGTCTTCTCTGTGGTGG 59 77415134 77415153 AGTTGGCTGTTTGTAATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp608 ENSRNOG00000023197 ENSRNOT00000033254 3 1 1 81 18 49838829 49838852 CTGTAGAAATGAAGTCTGTCATGG 60 49837244 49838794 GACTCCGGATCTTGTTTAAATCTC 60 NA Rattus norvegicus 81 Evx2 ENSRNOG00000001589 ENSRNOT00000002156 1 1 1 82 3 61580018 61580037 GGGAGAACTATGTGTCTCGG 60 61578634 61579973 GAACCACACCTTGATGGTG 59 NA Rattus norvegicus 81 Smpdl3a ENSRNOG00000000815 ENSRNOT00000001081 1 1 1 80 20 40797214 40797600 AGGAGAAGGTATACGTCATAGC 59 40797641 40797659 AGTACTGCCTCATTGCTGG 60 NA Rattus norvegicus 81 Olr583 ENSRNOG00000049657 ENSRNOT00000042996 2 1 1 60 3 75849096 75849115 CACCTCTCATTCTCTGACCT 59 75849136 75849156 GATCTAACAGCATCTTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo38 ENSRNOG00000019063 ENSRNOT00000025790 2 1 1 80 18 57831771 57834678 GATGATGTTCATCCATGCTACC 59 57831712 57831731 TCAAAGCGGTTTACAATCGG 59 NA Rattus norvegicus 81 RGD1304587 ENSRNOG00000002944 ENSRNOT00000004011 2 1 1 175 10 45559722 45559740 AGAACTACCTGGGCAACTC 59 45559878 45560043 GTTCTTGTAACCAAGTGCGG 60 NA Rattus norvegicus 81 Zfpl1 ENSRNOG00000050180 ENSRNOT00000075165 2 1 1 81 1 221446118 221446247 CTCCCTCTGATCGATGAGG 59 221446055 221446075 CATTAAAGCTGGACCAGTCAG 59 NA Rattus norvegicus 81 Kpna4 ENSRNOG00000010768 ENSRNOT00000014384 3 1 1 80 2 165702746 165702853 ACAATTCAGGAGATTCTTCCAG 58 165700374 165700392 GGCCCAGACAGTATCTACC 59 NA Rattus norvegicus 81 Prr27 ENSRNOG00000023342 ENSRNOT00000036314 3 1 1 80 14 21886396 21889808 CCCTTCATTCACAAGAAATCG 58 21884950 21884971 ATTCAGAGATGGTTTAAGTGGG 58 NA Rattus norvegicus 81 Flt3 ENSRNOG00000054764 ENSRNOT00000088957 3 1 1 80 12 9398494 9399332 TCACCATAGATCTAAACCAGGC 60 9399373 9399391 ACCTTATCCACAAGGGCTC 59 NA Rattus norvegicus 81 Olr242 ENSRNOG00000050447 ENSRNOT00000044619 2 1 1 60 1 172158367 172158388 CAGTGTTTGTCATAGCTGTCTC 59 172158409 172158427 GAGCGCATCTTCAGAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumo1 ENSRNOG00000016133 ENSRNOT00000022047 2 1 1 80 9 66470260 66470280 ACCTTCAACTGAGGACTTAGG 59 66460514 66470218 ATCTCACTGCTGTCCTGTC 59 NA Rattus norvegicus 81 RGD1565166 ENSRNOG00000021796 ENSRNOT00000032495 1 1 1 80 10 10563479 10563884 AAACTGTTCGAAGATGGCTG 59 10563926 10563945 TGCCAGGATGTAGAGAAAGC 60 NA Rattus norvegicus 81 Psmf1 ENSRNOG00000009640 ENSRNOT00000029620 2 1 1 80 3 147252925 147252948 GACTTGACTCTGAACTTAGATGAC 59 147248553 147252892 CTCCTCACTATTTCTATAGGTCCTG 60 NA Rattus norvegicus 81 Psmf1 ENSRNOG00000009640 ENSRNOT00000029620 3 1 1 80 3 147248570 147252903 AGTGATTTCCACAGGACCT 58 147248508 147248531 CTCATGGATAGGTGTGATAATTCC 59 NA Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 1 1 1 95 3 176088305 176088324 GTTCAGCCAGAATATTGGGC 59 176088382 176089244 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 Ces2g ENSRNOG00000013808 ENSRNOT00000048385 3 1 1 80 19 37031152 37031575 GCATGAAACTTAACCTCACTG 58 37031615 37031635 CATATCTTGCAAAGTTTGCCC 59 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 3 2 2 101 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779457 142779476 GAAAGTCATAGAGGGAGCCA 59 NA Rattus norvegicus 81 Spns1 ENSRNOG00000017621 ENSRNOT00000024185 2 1 1 80 1 197776270 197777733 CCAGACTGTGTTCATTTCCA 58 197776209 197776229 AGGTACTTTCGATTGTACCTG 58 NA Rattus norvegicus 81 Ccl2 ENSRNOG00000007159 ENSRNOT00000009448 2 1 1 81 10 69413001 69413362 AGAAGCTGTAGTATTTGTCACC 58 69413402 69413422 TCTAATGTACTTCTGGACCCA 58 NA Rattus norvegicus 81 Ccl2 ENSRNOG00000007159 ENSRNOT00000009448 3 1 1 81 10 69413002 69413363 GAAGCTGTAGTATTTGTCACCA 59 69413402 69413423 TTCTAATGTACTTCTGGACCCA 59 NA Rattus norvegicus 81 Cdk5r1 ENSRNOG00000021685 ENSRNOT00000031746 3 1 1 60 10 67863026 67863046 GTTATCAACCTCATGAGCTCC 59 67863066 67863086 GTGTGAAATAGTGTGGGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alpk2 ENSRNOG00000017421 ENSRNOT00000042352 1 1 1 80 18 60972815 60972835 AAGTCACTGCTGAGTTTAACC 59 60968939 60972682 TCTCTTCACATCCTCTGTATTCC 60 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 2 1 1 80 8 12331043 12331063 TTGTACAGCTGTCTATTTGGG 58 12331100 12332399 CACTGTCTTCTTAGGAAGATTCTC 59 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000040540,ENSRNOT00000085897 2 3 3 80 15 28307233 28307468 CCTCATTCCTCAAGATGGC 58 28307040 28307061 AGTACTTGAAAGCTTCTGTCAG 59 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 3 1 1 80 10 108369530 108371745 TCGCATAGAGAACAAGATTGAG 58 108371784 108371804 AGGTCGTTATCTAAGTCCCTC 59 NA Rattus norvegicus 81 Dck ENSRNOG00000003296 ENSRNOT00000004440 1 1 1 80 14 20948658 20948676 GATTGGGAAGTGGTTCCTG 58 20944977 20948616 TGTTGTCAACTCCTCAAACTC 59 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 2 2 2 80 18 86365386 86383889 TCATAACTGATGGTGGAACC 57 86383930 86383950 TTAGGATGACAAGTAGCAGTG 58 NA Rattus norvegicus 81 Gins2 ENSRNOG00000017575 ENSRNOT00000023709 2 1 1 80 19 54163072 54163092 CTGGCCATTAACCTGAAACAG 60 54158958 54163032 CATCTGCTCCAATTTCTCCAC 59 NA Rattus norvegicus 81 Mapkapk2 ENSRNOG00000004726 ENSRNOT00000061070 2 1 1 80 13 47786706 47787181 ATGTCAAGGAGGAGATGACC 59 47786645 47786669 CGTCCTCTATCTTCTTTATCTTGAC 59 NA Rattus norvegicus 81 Olr43 ENSRNOG00000018514 ENSRNOT00000024971 3 1 1 60 1 167720306 167720324 CTTTGATCGCTTCATTGCC 58 167720347 167720366 TGAGTGAGGAAGGATTGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr555 ENSRNOG00000010052 ENSRNOT00000013328 1 1 1 60 3 75300005 75300024 GAAGTTGCCATCAAACACAG 58 75300046 75300065 CATAAGGTGGGAAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000088130 3 1 6 86 20 3559072 3559092 GCCTCCCTATAGTTTAAGCCT 59 3559140 3562542 ACAGCATCTCCAAGGTAGC 60 NA InUTR Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827,ENSRNOT00000025070 3 2 2 80 4 118885377 118891769 GCCAGTACAAAGGCTTACAC 59 118891809 118891830 CATGGAGATTCTGTCATCACAC 59 NA Rattus norvegicus 81 LOC103690255 ENSRNOG00000053006 ENSRNOT00000078723 2 1 1 60 4 72293019 72293040 AGCCATCTTTACATACATGAGG 58 72293060 72293079 AACCATCTTCTCTTGTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428,ENSRNOT00000065187 1 2 2 80 1 199198674 199198695 GAGGAGAAATTTAGTTTGAGCC 58 199198736 199198885 CTTTCCCATCTTCAGGCAG 58 NA Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 2 1 1 80 14 23604731 23604751 ACTAAAGATCACTGCTCTACC 57 23599047 23604689 TAGTGTTCGTACTCCTGGT 57 NA Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 1 1 1 83 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495427 181500777 GTTCATGTTGCGATCTCGG 59 NA Rattus norvegicus 81 Samd3 ENSRNOG00000039955 ENSRNOT00000061389 1 1 1 80 1 20155934 20155952 GTGGTCAGTTGATCAGGTC 58 20155250 20155892 ACTTCTTCCTCTTGAAACCTG 58 NA Rattus norvegicus 81 Ptprq ENSRNOG00000056915 ENSRNOT00000081885 1 1 1 80 7 50027208 50027227 AGTGGCATAGTAGTCAAGGA 58 50026054 50027167 GCTGTTCTCATTACATTCAGG 57 NA Rattus norvegicus 81 Olr437 ENSRNOG00000057924 ENSRNOT00000079349 3 1 1 60 4 72589582 72589602 ATGGGTCACAGAATTCATCCT 59 72589623 72589642 GAGGAACATTTCCATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 2 2 2 80 2 196511843 196511863 GTATGAAGACATCCTCAGCCT 59 196510767 196511803 TCACAGCACCCATATTAGGAC 60 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 3 1 1 76 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11477679 11479521 GGATCTGTGTCAGGGTGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100359587 ENSRNOG00000046646 ENSRNOT00000071887 2 1 1 94 15 32051687 32051800 TTTCTCCTGAGAGTTGCCC 59 32051858 32051876 TACTTGCATCTCAGCTGCA 59 NA Rattus norvegicus 81 Cpne1 ENSRNOG00000050864 ENSRNOT00000026657 1 1 1 80 3 151618871 151618889 TTTGCACCCATCATCAACC 59 151618249 151618828 CAGTACGAAGTATTGCGAGG 59 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 2 2 2 82 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827602 8827620 AGAACATTGTTGCCCAGGT 60 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 3 2 2 82 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 LOC100910090 ENSRNOG00000046441 ENSRNOT00000071682 1 1 1 60 4 161212884 161212902 GAAAGCAGAAACACCTGGA 58 161212926 161212944 CCTTGTCCCAAAGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr6 ENSRNOG00000049580 ENSRNOT00000073276 2 1 1 60 20 45814312 45814330 CATCTACACCTATGCCACC 57 45814270 45814290 GATGATGGGATTGATCATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase2 ENSRNOG00000032133 ENSRNOT00000050820 3 1 1 67 15 28155061 28155239 GGAAACATGGGTGTGAAGC 60 28155012 28155030 ATTGAGACAAGTCCCAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000089879 2 1 5 92 18 79352051 79372052 GGCCAGTAAGGATGGTGAG 60 79372107 79372126 ACATCACTGTCTTCTGAGGC 60 NA Rattus norvegicus 81 AABR07017635.1 ENSRNOG00000046292 ENSRNOT00000075046 1 1 1 62 15 29465761 29465779 CTTTCAGCTCCATTTGCCT 58 29465534 29465552 TTGAAGCCTGAGTTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586,ENSRNOT00000018556 2 2 2 80 1 15906114 15913137 TGCCAAAGGAAATGACACAG 59 15906053 15906074 ACTCATTCTGTCTGTTGATGTC 59 NA Rattus norvegicus 81 Car5a ENSRNOG00000019098 ENSRNOT00000025848 1 1 1 80 19 54755048 54755066 CGTCCTGCAGATACCTCTG 60 54742587 54755004 CACTGATCCCTGACTCCTC 59 NA Rattus norvegicus 81 Cog4 ENSRNOG00000017745 ENSRNOT00000023927 1 1 1 80 19 43369574 43369592 AGCAAGGCAAGTTTGACAC 59 43363261 43369533 CCACATTATTCAGAGTCACCAG 59 NA Rattus norvegicus 81 Rn60_4_1369.2 ENSRNOG00000050575 ENSRNOT00000075192 2 1 1 80 4 72089000 72089824 TAGAGACATATCTGCAGCTCC 59 72088940 72088961 GAACAATGGTTTGGTATTCAGC 59 NA Rattus norvegicus 81 Fam229b ENSRNOG00000024918 ENSRNOT00000036853 2 1 1 84 20 44219165 44219187 GAGAAAGTCCTTACGAGTTTCAC 60 44210587 44219121 TCACATAGCTTCCTGCCTG 60 NA InUTR Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000089492 3 1 3 80 4 85301256 85301274 GAATGCCTGGAGAATGGGA 60 85299280 85301213 CGGATACTCCTTGTCATCCA 59 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578,ENSRNOT00000081125 2 2 2 80 7 2982030 2982248 CCAATAGAAGGTATGCTGTCAC 59 2981971 2981994 GTCTGTAGGATTCTGGATAATGGT 60 NA Rattus norvegicus 81 Olr1437 ENSRNOG00000048938 ENSRNOT00000071556 3 1 1 60 10 44408041 44408062 TGAAGACACATCCCAATATGAG 58 44408083 44408101 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0694.1 ENSRNOG00000051279 ENSRNOT00000076465 2 1 1 60 X 68470245 68470265 ATCAAACCTTACTTGCCTCTG 58 68470285 68470305 GTCTGTGGTACAAGATTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1440 ENSRNOG00000048241 ENSRNOT00000048778 3 1 1 60 10 44972278 44972297 ACACCTTCCTCTTCACAGTC 59 44972237 44972257 GTGATGTTTCCTATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam208b ENSRNOG00000018011 ENSRNOT00000048933 3 1 1 80 17 70267986 70268004 CTTTGGAGATGAGCAGCTG 59 70268045 70271278 ACTTTCAAGTCCTTTGATCCTG 59 NA Rattus norvegicus 81 Tnmd ENSRNOG00000060970 ENSRNOT00000083229 3 1 1 81 X 104684929 104685115 CACATTCTAAATGCAGAAGCTC 58 104685155 104685175 CCAGGATACCAAACACTAGTC 58 NA Rattus norvegicus 81 Fbxl8 ENSRNOG00000015242 ENSRNOT00000020440 2 1 1 80 19 37223566 37224395 TGATACAAGCATCAGTTGTGAC 59 37224435 37224454 TTGTGAATGTGGTCTAGGCA 59 NA Rattus norvegicus 81 Rftn1 ENSRNOG00000011321 ENSRNOT00000015210 3 1 1 80 9 12853687 12881365 GGAGTTCATTAAGAAGGTACAGG 59 12881405 12881423 ACAGAGGTCTGGTACTGAG 58 NA Rattus norvegicus 81 Antxr1 ENSRNOG00000008678 ENSRNOT00000011675 3 1 1 80 4 119007069 119018782 CTGCACAGTGATCATTAAGGAG 59 118998976 118998996 TTCTTTGGCAAACCATCATCG 60 NA Rattus norvegicus 81 Upf2 ENSRNOG00000023593 ENSRNOT00000058070 1 1 1 80 17 76250815 76250838 GTTCACTATACATCATCTGCACTG 60 76250518 76250780 GGCTTCTTCATCTTCTTGTTCTC 60 NA Rattus norvegicus 81 Gars ENSRNOG00000011052 ENSRNOT00000014780 2 1 1 80 4 85273686 85273707 CTCCATTCAAATGTTCTGTCCT 59 85273746 85274348 TCAGAGCTTCCGATAATTCCT 59 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000088000 3 1 2 91 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126622247 126622266 TCTAATACGCAGAGGTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 1 1 1 78 10 109278974 109278992 CCTGAGTAAGGACCTGTGC 60 109279034 109280663 CATCATGGTCTTCTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Slc30a10 ENSRNOG00000002397 ENSRNOT00000049499 2 1 1 80 13 103404500 103405654 AACATGGAGGAGCTGATGAG 60 103405696 103405715 TATCAGTTCCCAGATGTGCA 59 NA Rattus norvegicus 81 Nog ENSRNOG00000023683 ENSRNOT00000032388 1 1 1 60 10 76813032 76813050 TATCTACACATCCGCCCAG 59 76812990 76813008 GATGTTCGATGAGGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp236 ENSRNOG00000016303 ENSRNOT00000022086 3 1 1 80 18 79525451 79525469 CAAGGCCTGTAAGAAGGAG 58 79522747 79525409 CCTGATGCCCTAACTTTACAG 59 NA Rattus norvegicus 81 Phyh ENSRNOG00000018044 ENSRNOT00000024362 1 1 1 80 17 77297011 77298772 GATATTCAACGGTTTCGAGCA 59 77296951 77296973 GTCTTTCATTACAGTCATCCCTG 59 NA Rattus norvegicus 81 RGD1562469 ENSRNOG00000029410 ENSRNOT00000046791 3 1 1 60 13 30800018 30800037 CACTTTGTGAGGACTAACGG 59 30799977 30799998 TAAATTCGTATGGAATGGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 3 2 2 105 10 15324317 15324335 CTCTGTCTTCAGGGACCAC 59 15324129 15324248 CAATGCACTCAGGAACCAG 59 NA Rattus norvegicus 81 Foxh1 ENSRNOG00000015371 ENSRNOT00000020696 1 1 1 80 7 117732159 117732177 CTTACTTGGCCATGATCGC 59 117731833 117732117 GGACCTGACGGATAATCTGAG 60 NA Rattus norvegicus 81 Pmf1 ENSRNOG00000019620 ENSRNOT00000035383 1 1 1 80 2 187756860 187757569 CAGACGTCTATCCGTGAGG 59 187756798 187756819 TATCTTATCCAGGGAGTTCAGG 59 NA Rattus norvegicus 81 Mug2 ENSRNOG00000033245 ENSRNOT00000072465 1 1 1 80 4 154267798 154268648 AAGTTCACTCCCAGATCCT 58 154268690 154268710 TTTCTTCCTTGCTCTATGGTC 58 NA Rattus norvegicus 81 Slc17a6 ENSRNOG00000016147 ENSRNOT00000022383 3 1 1 80 1 107035705 107036613 CAATGACGAAGAACAAGTCCC 60 107036652 107036673 ATATGACTCCACCATAGTGGAC 59 NA Rattus norvegicus 81 Ptges ENSRNOG00000006320 ENSRNOT00000045993 2 1 1 61 3 9736238 9736256 GAGTGACCCAGATGTGGAG 60 9728378 9728397 GGTAGATCGTCTCCATGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Rad9b ENSRNOG00000021480 ENSRNOT00000048454 3 1 1 80 12 39714900 39714920 TCAAGAGGAAGTCACCTTCTC 59 39714959 39718312 CTGGTTAAATCCAGTGATTCCC 59 NA Rattus norvegicus 81 Pibf1 ENSRNOG00000009208 ENSRNOT00000036350 1 1 1 80 15 83552904 83592396 CAGCTCCTAGACAGGTACAG 59 83592439 83592457 CTTCAGCTTGCTCTGATGG 59 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 3 2 2 81 7 11279523 11280525 TCCGGACGATTACTTGTACTC 59 11279462 11279480 GTAGAAGACGGAGCCACTG 60 NA Rattus norvegicus 81 Znhit6 ENSRNOG00000030049 ENSRNOT00000041897 3 1 1 81 2 251460046 251460064 GTGTTTACTTGAGGCTGCT 58 251460108 251469961 AACTGCTGATTCCTATGGTC 57 NA Rattus norvegicus 81 Olr712 ENSRNOG00000058008 ENSRNOT00000044992 1 1 1 60 3 78571170 78571189 GGTGTGACATATACCCACTC 58 78571129 78571151 GAAAGTCCAATGAAGTAGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr712 ENSRNOG00000058008 ENSRNOT00000044992 3 1 1 60 3 78571509 78571527 TCTGTCACTCATGGATGCT 58 78571467 78571487 CAAGTCTACAATCAACTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 1 1 4 80 9 81575876 81575898 CTAGGTGTACTGCATCATTTCTG 59 81575702 81575836 CTGACTGGTTCCACAAAGG 58 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 1 2 2 80 4 34602699 34610181 ATGATCGTGATAAAGACAGTGG 58 34610221 34610240 ACATGTAGCTGTTGTTTGGT 58 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 2 1 1 80 1 266639225 266639245 AGAAGGCATGAAGTTTGAAGC 60 266639287 266642378 AGGGACAAAGGAACTGGAG 59 NA Rattus norvegicus 81 Zfpm1 ENSRNOG00000043077 ENSRNOT00000068452 2 1 1 81 19 55118791 55121067 ACCCAGAGAAGATGTGAGC 59 55121112 55121130 CTCTTGTCCCTCCACATCC 60 NA Rattus norvegicus 81 LOC100294508 ENSRNOG00000012204 ENSRNOT00000016493 2 1 1 80 5 144850497 144850518 AAGAGAAGATCTCTGAAGACAC 57 144850558 144854193 CAACAGTCAAGCTGAAAGTG 58 NA Rattus norvegicus 81 Rn60_X_0706.1 ENSRNOG00000003035 ENSRNOT00000004052 2 1 1 60 X 69717786 69717809 CCCTGTCACAAAGATACAAATCTC 60 69717749 69717770 CACATGTTACTCAGGAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790,ENSRNOT00000084017 1 2 2 87 1 57358750 57360113 GAGGACTGGAAAGACGGAG 60 57360164 57360182 CTAGGTCTGGGTGCTTCAG 60 NA Rattus norvegicus 81 Sft2d3 ENSRNOG00000016216 ENSRNOT00000021708 3 1 1 121 18 24692918 24692937 TACTCTACGCGTTGATAGGG 59 24692816 24692834 AGATTGGGACTGTCACACC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 LOC100362150 ENSRNOG00000047415 ENSRNOT00000042300 3 1 1 60 4 93791079 93791097 TTCTTGGGTTCTTGTTGCT 58 93791231 93791250 GACTGGGTCATCTGAATGTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 1 2 3 81 1 37957326 37957344 CCCTGCTCAATGGAATCTG 58 37956098 37957283 CTTAGAGAAAGCAAGACCCAG 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 1 1 1 62 14 21819576 21820860 TGCCAGTGATGAGTTACCT 58 21819532 21819550 TATCCACCAAATGGAGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121,ENSRNOT00000018153 3 2 2 80 1 92108875 92108895 TTGTCAGTAGCTTCGAATGAG 58 92105022 92108834 TGAAGACTTGTTCCCTTCCT 59 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 1 2 2 80 7 71136414 71138333 AGTTGGGAACAGAGGACTC 59 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000082009 2 1 3 97 4 158637987 158673273 GCTTCCTGAAGATCTTACAGG 58 158637910 158637928 ATCCATGTTGTTGCCTTGG 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 1 2 2 80 17 87929060 87931283 TCAGACCTGACTATGCTGG 59 87928998 87929019 CTCGGAAGTACTCATTGTAGTC 58 NA Rattus norvegicus 81 Mir344b-1 ENSRNOG00000049100 ENSRNOT00000071684 1 1 1 60 1 121193196 121193216 CTGCTGGTTATATTCCAGGAC 58 121193156 121193175 ATTTAACAGTCGGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir344b-1 ENSRNOG00000049100 ENSRNOT00000071684 3 1 1 60 1 121193198 121193217 GCTGCTGGTTATATTCCAGG 59 121193157 121193175 TTTAACAGTCGGGCTTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 1 2 2 80 12 47972914 47972932 TCCCAGAAGAAGTCCAACC 59 47971606 47972870 GTCATTGAGGCCGTAATCC 58 NA Rattus norvegicus 81 Mapkap1 ENSRNOG00000017583 ENSRNOT00000023889 1 1 1 80 3 13696776 13696797 TAAGCAGTCACGACTATAAGCA 59 13696836 13700283 TGTAGTTAACCTTGAGCACGA 60 NA Rattus norvegicus 81 Plekhj1 ENSRNOG00000019247 ENSRNOT00000026155 1 1 1 80 7 11785810 11785830 ATCACTTTGAATGCTGTAGCC 59 11785870 11785967 GTCTCATGTATTCGTAGCTGG 58 NA Rattus norvegicus 81 Dclre1c ENSRNOG00000015980 ENSRNOT00000021506 1 1 1 80 17 78807485 78810798 TGGAATGCAGTTTGAAGGT 58 78807423 78807442 AGAACTTGTACTTTGGGCTG 58 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076186 2 1 3 60 13 82557540 82557561 GCTAAATGAGATGTTCTTTGGG 58 82559160 82559181 GTAAGAGTATGTCCACACTGGA 59 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962 1 1 10 80 15 32796581 32852780 CTTAGGGTCCATCCAAATGTC 59 32852820 32852840 GAGGGTGATGTTATCAGACTG 58 NA Rattus norvegicus 81 Spty2d1 ENSRNOG00000050806 ENSRNOT00000075006 2 1 1 82 1 103120065 103120084 AGTGAAAGGTGTCCAGTCAG 60 103119298 103120020 TCTCTTCCAAGGCTTTCCG 60 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 2 1 1 81 7 10500316 10500334 TGGATCCTTCCCAGAAGAG 58 10499962 10500274 TCCAATTTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 Uba6 ENSRNOG00000021931 ENSRNOT00000037509 2 1 1 80 14 23513089 23513109 CTTCTTAAGTGGTATGGGTGG 58 23513745 23517141 TGAATTGTCAGTGCCTTAATCC 59 NA Rattus norvegicus 81 Slc7a6os ENSRNOG00000020049 ENSRNOT00000027200 1 1 1 80 19 38182676 38182694 AAATAACTGGCGCAACGAG 59 38181534 38182635 CTGTTGTATTCATCAGAGCCTC 59 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359 2 1 2 83 6 99434177 99434293 TCAGAGTGATGAAGGAGATCG 59 99434336 99434356 CGTTGAAATAGGCAGGAACAG 60 NA Rattus norvegicus 81 Fam205a ENSRNOG00000042596 ENSRNOT00000068752 2 1 1 99 5 58288005 58288023 TACCGAGGATTGAAGTGCG 60 58286829 58287335 AAAGTCTCCTGGCTCTTGAC 60 NA Rattus norvegicus 81 Ccdc94 ENSRNOG00000047456 ENSRNOT00000072357 3 1 1 80 9 11101074 11102711 CATTCTTGATGAGGTACCAAAGAC 60 11101017 11101035 GGTATAACCAAGCCTGCCA 60 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000085925 1 1 2 90 6 44361989 44363881 CCGATTCATGGCGATTCAG 59 44361917 44361935 GTTCAGAATGAAGCGCGAG 60 NA InUTR Rattus norvegicus 81 Ppid ENSRNOG00000027408 ENSRNOT00000037890 1 1 1 80 2 178363958 178363976 TGTGCTGAATATTGGTGCT 57 178364020 178365757 ATTTCAAGAGCCTCCAAGC 58 NA Rattus norvegicus 81 Otub1 ENSRNOG00000021175 ENSRNOT00000028752 1 1 1 80 1 222453557 222457753 CAGAAGATCAAGGACCTCCA 59 222453496 222453514 AAACGCTCGATAGAAGCAG 58 NA Rattus norvegicus 81 Ndufa5 ENSRNOG00000005698 ENSRNOT00000008325 1 1 1 80 4 51593427 51593446 CCTAAACATGCAGCCTACAG 59 51590956 51593387 AACATCTGGTTCCAATTTGACC 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866,ENSRNOT00000091221 2 2 2 80 2 114443392 114444047 GTGTTGCTGGATAAGTTCAC 57 114444088 114444108 CCCAATCTCAAAGAAACTGAC 57 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866,ENSRNOT00000091221 3 2 2 80 2 114423657 114426089 CACCTCAAGAGGTAATAATATCCC 58 114426124 114426146 CATAGTTAATGGTAGCTCTTCGG 59 NA Rattus norvegicus 81 Lrch4 ENSRNOG00000001402 ENSRNOT00000001899 1 1 1 80 12 22131058 22131076 GTTATGATGGTGGCCTGGA 60 22130763 22131016 CATCTGTGGACTCATTTCCTG 59 NA Rattus norvegicus 81 LOC102552796 ENSRNOG00000027296 ENSRNOT00000027019 3 1 1 60 18 30858894 30858914 ACTCAAGCCTTACAATCTACC 58 30858933 30858954 GCAAAGAAGACACATGAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw2 ENSRNOG00000018687 ENSRNOT00000025399 1 1 1 80 3 13881554 13891736 ACTTCTCTGTACAGGGTCAG 59 13881493 13881511 GTCTGGATGCCGTAAACAC 59 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000064760 3 1 2 203 10 87564102 87564120 TGCATTTCTAGCTGTTGCC 59 87563878 87563896 CTGACCACAGACTGGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07003433.1 ENSRNOG00000037133 ENSRNOT00000056014 2 1 1 80 1 109665970 109665992 GGAATCCTACAGAAATGATGGAG 59 109666031 109666075 CTACAACCCATTGTGGTTCC 59 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259,ENSRNOT00000086539 2 2 2 80 5 120454005 120454023 CCCTGCTGTTCGATTACTC 58 120454065 120455603 CACATGTAGCCTAAGTACCTC 58 NA Rattus norvegicus 81 Mbd2 ENSRNOG00000011853 ENSRNOT00000016112 1 1 1 80 18 65874891 65876150 TAAAGGTCTTCAAGGAGTCG 57 65876193 65876211 GAGCTTGTATGCAAAGCAC 58 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 2 1 1 84 2 62029778 62029796 GAGTTCTAGAGCACTGGCA 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Ms4a15 ENSRNOG00000026957 ENSRNOT00000037226 3 1 1 80 1 227035367 227035387 ATCCTGGAGTTCTTCATTGCT 60 227034448 227035328 AATCACAGATGCGTTAGTTTGG 60 NA Rattus norvegicus 81 RGD1565635 ENSRNOG00000016417 ENSRNOT00000021981 1 1 1 65 18 750864 750882 ATGTGATGCAGGAAACCTG 58 751085 751105 CAAGGATACAGTCTTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 3 2 2 80 6 125892611 125892630 AAGTGTACATGCCAAAGCTG 59 125892669 125893811 GTGAGTCCTTTAATCTTACCTGG 59 NA Rattus norvegicus 81 Rrp7a ENSRNOG00000022896 ENSRNOT00000034983 2 1 1 80 7 123985601 123986376 AACGGGATTCACAAGTGGA 59 123985539 123985558 GAATGTGTCTACTTCGAGCC 59 NA Rattus norvegicus 81 Adamtsl2 ENSRNOG00000027742 ENSRNOT00000036995 2 1 1 80 3 5629922 5632539 GTGACAATCATCTTGGTTACTCC 60 5632576 5632597 ACTTCTTCCTCTCCACAATCTG 60 NA Rattus norvegicus 81 Otop2 ENSRNOG00000028121 ENSRNOT00000038935 3 1 1 84 10 103876014 103876032 TCCAGTTTCTTTGAGTGCC 58 103876077 103877616 GAAAGTAAGTCTGGACAATGAC 57 NA Rattus norvegicus 81 Tgfb1i1 ENSRNOG00000019965 ENSRNOT00000054980 3 1 1 80 1 199665803 199665821 GACTCTGTGAGCTAGACCG 59 199665860 199666030 GGAACTGAGACATGATTTCATCTG 60 NA Rattus norvegicus 81 Ttll12 ENSRNOG00000022623 ENSRNOT00000037710 3 1 1 80 7 124476830 124476852 GACGACTATGAGAAGCATTTCAC 60 124475120 124476795 GATGAACTCATTATAGTGCACCTG 60 NA Rattus norvegicus 81 LOC100361537 ENSRNOG00000026900 ENSRNOT00000034506 1 1 1 80 11 88166253 88166274 CCATCTTTCACAGATCCATCAG 59 88166627 88167122 AGTATGACTCTCCTCCTGTG 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495,ENSRNOT00000032112 1 3 3 80 4 158420161 158420181 GAAACTGCTAAAGGAGAGTGG 59 158420221 158497418 TCTTCATCATCCTCATCGTCC 60 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 3 2 2 80 12 22201289 22201307 TGACAGAGCTGATGTTCGA 59 22199503 22201245 CATTTGCAAAGGCTGTGAG 58 NA Rattus norvegicus 81 LOC688389 ENSRNOG00000028582 ENSRNOT00000059424 1 1 1 80 2 88744819 88746115 CTTATAAGGTGTGCTTGCCA 58 88744758 88744778 GAGACTGAATTATTGGTGCCA 58 NA Rattus norvegicus 81 Rbmx2 ENSRNOG00000007371 ENSRNOT00000048922 1 1 1 83 X 135553310 135555310 GTGTTCTCACAGTATGGAGAG 58 135555353 135555373 CAGGAAACAGAATCCTTTGGA 58 NA Rattus norvegicus 81 Dcc ENSRNOG00000033099 ENSRNOT00000064947 1 1 1 80 18 66706442 66706460 CCATGACTGTCAATGGCAC 59 66680252 66706400 CTTGAGACTCGTCTAAGTCGT 59 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 3 1 1 80 8 12364505 12364678 GTGGAAACAGAGCCATAAATCC 60 12364716 12364737 GATGGCTTAGATTCCAGTTTGG 60 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537,ENSRNOT00000084613 2 2 2 80 18 1180526 1181031 TTTGCTGATGATATTGGCTCC 59 1180466 1180486 AGAACTAGATCTTCCCTGGTG 59 NA Rattus norvegicus 81 Efna1 ENSRNOG00000020573 ENSRNOT00000027920 2 1 1 80 2 188593018 188596014 TTCAAATCCCAAGTTCCGAG 58 188592957 188592976 TAATGTGGGCAGATGATGTC 58 NA Rattus norvegicus 81 Dntt ENSRNOG00000013615 ENSRNOT00000051058 1 1 1 80 1 260317452 260320817 ATGACAAGACCAAGAGGGTG 60 260320857 260320878 GTTCAATGTAGTCCAATCCCAG 59 NA Rattus norvegicus 81 AABR07032457.1 ENSRNOG00000015806 ENSRNOT00000021161 3 1 1 82 18 66741327 66741843 GAAGAGTCTACATACAATGTCACC 59 66741884 66741902 CTCTTGGCCAGAATCTTGC 59 NA Rattus norvegicus 81 LOC102555377 ENSRNOG00000026569 ENSRNOT00000034746 2 1 1 90 1 62171412 62171431 TACCTTGACTGTGCTCAGAG 59 62171481 62172733 GACATAAGTGATGACTCTCCAC 58 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 3 2 2 91 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958569 94958587 GAGTCCTCACAAGTCCCAG 59 NA Rattus norvegicus 81 Gadd45b ENSRNOG00000019822 ENSRNOT00000026871 1 1 1 80 7 11647417 11647860 AAACTGATGAATGTGGACCC 58 11647356 11647376 CAGAGCAATATCATCCTCCTC 58 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000074904 2 1 2 93 9 9931793 9932156 CAGATACAGGAAGAGGCCC 59 9931500 9931518 CATCCTCGTCCATCTGTCC 60 NA Rattus norvegicus 81 Hyal5 ENSRNOG00000039466 ENSRNOT00000060478 2 1 1 87 4 52247278 52247297 ACCCTCATAATCCACTTCCT 58 52247347 52248154 ACAAGGTCATCCTGTTCCA 59 NA Rattus norvegicus 81 Hyal5 ENSRNOG00000039466 ENSRNOT00000060478 3 1 1 87 4 52247277 52247296 GACCCTCATAATCCACTTCC 58 52247346 52248153 CAAGGTCATCCTGTTCCAG 58 NA Rattus norvegicus 81 Hgs ENSRNOG00000036696 ENSRNOT00000054966 2 1 1 81 10 109650881 109650899 CAGCTGGTAGCCTGTACTC 60 109651561 109651661 AGGTATCTTGCAAGCTCAGG 60 NA Rattus norvegicus 81 Creb3l4 ENSRNOG00000023493 ENSRNOT00000032062 1 1 1 80 2 189601109 189601289 CCATCCAGATAGATCAGTGGAG 60 189601050 189601068 TATGAGCTTCAGAGGGCAG 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083289 2 1 8 106 3 100789006 100815565 TTTCATCCGGGATTCCACC 60 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Ccdc181 ENSRNOG00000002860 ENSRNOT00000003844 1 1 1 80 13 82579611 82579631 TCTTTCACCAAGACAGAAGGA 59 82579673 82584034 TTACGCTGTTCTTCCTCCC 59 NA Rattus norvegicus 81 Cidea ENSRNOG00000018505 ENSRNOT00000024968 3 1 1 80 18 63099466 63099488 AGTTCTTTCAGACCCTAAGAGAC 60 63099527 63106744 CATACTTATTGCCCGGTGTC 59 NA Rattus norvegicus 81 Spaca5 ENSRNOG00000045622 ENSRNOT00000075264 2 1 1 80 X 913101 915246 GATTGTAATGACCTACTCAACCG 59 913043 913067 CATACTCTTATGTGAGGATACAACC 59 NA Rattus norvegicus 81 Trpv2 ENSRNOG00000003104 ENSRNOT00000004248 3 1 1 80 10 48917450 48918035 GAAATCCTCTTTCTCCTTCAGG 59 48918074 48918094 GGGTAGGTACCATTCAGTCTC 59 NA Rattus norvegicus 81 Slc39a1 ENSRNOG00000059463 ENSRNOT00000089016 3 1 1 81 2 189611019 189613359 CATGTGACGCTTCAGTTCC 59 189613404 189613422 GTGTGATCTGCTCCATCAC 58 NA Rattus norvegicus 81 LOC691153 ENSRNOG00000048187 ENSRNOT00000072274 1 1 1 61 10 85573762 85573781 GCCAGGAACATTTCAATCGT 59 85573720 85573738 GAACCCTTTCGCGTAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp182 ENSRNOG00000047132 ENSRNOT00000073016 3 1 1 85 X 985272 985293 ATCTCATTATCAAGCTGGAGGT 59 985339 998022 AACTTGGCAGACTTCTGGA 59 NA Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000050973 ENSRNOT00000073780 1 1 1 60 1 259080730 259080748 CTCGAGCAATTAGGTTGGG 58 259080688 259080708 CCTAGAATAACCCGATGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan20 ENSRNOG00000005886 ENSRNOT00000008887 3 1 1 141 5 146769402 146769420 GTTCAGGAGTTCCAGAGGT 59 146768838 146769297 GTGTGAAGACAGCACTCTC 58 NA Rattus norvegicus 81 Sfn ENSRNOG00000033153 ENSRNOT00000043959 1 1 1 60 5 151824248 151824266 TGAAGGGTGACTACTACCG 58 151824206 151824224 ATGCGCTTCTTGTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 1 2 2 80 2 243841237 243842501 CCCTCTACAGAACAGGTGG 59 243842544 243842563 GAGATCAACCGAAGGTTTGC 60 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 2 2 2 80 4 22553176 22553195 AACAGCTGGTTCAACAAGTG 59 22553233 22561669 GAGTTCTTCAAGATAACCCTTCTG 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859,ENSRNOT00000072538 3 2 2 80 15 106280661 106280679 GAGCTGAGACTGCTGAGAG 60 106280722 106281909 CTGCATGAACTTCTCCTTCC 59 NA Rattus norvegicus 81 AABR07003244.1 ENSRNOG00000050893 ENSRNOT00000072944 3 1 1 82 1 99941213 99941232 ACCTATTCACAGAGGGTGAC 59 99940901 99941168 ACCATGGAGATCATGCAGG 60 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768,ENSRNOT00000063977 3 2 2 80 19 38857552 38857575 GGATCAAGTCTATCAACCATTAGC 60 38857612 38860872 TTCACATCTGTACAGGACTGG 60 NA Rattus norvegicus 81 Ppp1r16a ENSRNOG00000015450 ENSRNOT00000020768 2 1 1 81 7 117754021 117754039 CCAGTTCCTTACCAGTGGG 60 117754084 117754181 GTCATCAATGCAGCACTGG 60 NA Rattus norvegicus 81 Pwwp2a ENSRNOG00000003936 ENSRNOT00000067013 3 1 1 80 10 29330391 29330409 TACAGTGTCTGACAGACCA 58 29330453 29333227 GCTAATGTCTTTGTGCTGC 58 NA Rattus norvegicus 81 MGC94199 ENSRNOG00000049287 ENSRNOT00000070963 3 1 1 84 5 23372104 23372122 TGTAGCCTGTGACTTCCAG 59 23372167 23376266 CATGTTGTTTCTGAAGAACAGG 58 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000078758 1 1 12 60 20 3359996 3360014 GTCCATCTCGTCTAGAGGG 58 3360038 3360056 GGCAGTGGAATAGTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.1 ENSRNOG00000047444 ENSRNOT00000070880 3 1 1 97 15 31032804 31032916 TTTCTCCTGAGAGTTGCCC 59 31032976 31032995 GAATAGGTGCATCTCAGCTG 59 NA Rattus norvegicus 81 Nipal4 ENSRNOG00000006255 ENSRNOT00000008544 2 1 1 89 10 31244511 31244529 GTGATGGTCATACATGCCC 58 31243973 31244460 AAATACGATGAACCCTGTGTC 59 NA Rattus norvegicus 81 Rnase17 ENSRNOG00000050295 ENSRNOT00000048941 1 1 1 60 15 28204360 28204381 CTTTCTGTAACCTCACAACTCC 59 28204321 28204345 CTTGTAGTTTGGTATCTACATTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909831 ENSRNOG00000054293 ENSRNOT00000074870 2 1 1 60 3 73636391 73636411 CCTGATCATCCTTACAATGGT 58 73636351 73636371 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000075982 3 2 4 92 2 208571851 208573665 TGTAACAGGACCCTACGTG 59 208571777 208571796 ATGGTAGAGAAGGTCTCTGG 58 NA Rattus norvegicus 81 Hbb ENSRNOG00000058105 ENSRNOT00000090422 2 1 1 139 1 168971520 168972221 GAGAACTTCAGGCTCCTGG 60 168971399 168971418 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Ces2e ENSRNOG00000011635 ENSRNOT00000015724 1 1 1 80 19 96241 96495 TACAGATGATGCTGCCTCC 59 96537 96557 GGAGAGTCTTGGAATCCTCAG 60 NA Rattus norvegicus 81 Pofut2 ENSRNOG00000001228 ENSRNOT00000001644 1 1 1 80 20 12128597 12128616 TCAGGAGAAGAATTCTGGCC 60 12127059 12128555 ATACAGAAGGTACCGTCTGC 59 NA Rattus norvegicus 81 LOC500956 ENSRNOG00000020580 ENSRNOT00000027949 2 1 1 81 8 21892888 21893036 ATATCCAGGCAGTAGCCAC 59 21893081 21893099 ATGAGGTCATCTTGGGCTC 59 NA Rattus norvegicus 81 Olr1399 ENSRNOG00000049535 ENSRNOT00000050554 2 1 1 95 10 34756772 34756790 ATCAAGTCCATGGCTGGTC 60 34756846 34772408 GTATGTGTAGATAGCTGAGCCA 60 NA Rattus norvegicus 81 Mc2r ENSRNOG00000016681 ENSRNOT00000022347 1 1 1 149 18 64168205 64177614 AGAAACTGGATCCTTCCGC 60 64168074 64168092 TTGCTGTGTTGTTGGTGTG 60 NA InUTR Rattus norvegicus 81 Mc2r ENSRNOG00000016681 ENSRNOT00000022347 2 1 1 151 18 64168205 64177614 AGAAACTGGATCCTTCCGC 60 64168072 64168090 TCTTGCTGTGTTGTTGGTG 59 NA InUTR Rattus norvegicus 81 LOC317588 ENSRNOG00000030580 ENSRNOT00000049046 2 1 1 80 X 137949395 137949519 TAGAGAACCTACCTTTCTGCC 59 137949559 137949579 CGTCTCCTTTCTTTACATCGT 58 NA Rattus norvegicus 81 Sgip1 ENSRNOG00000006357 ENSRNOT00000064567 3 1 1 80 5 122390579 122398328 AAAGACACTGATTCTACAGGC 58 122401181 122401199 TGCTTTGCTATGGTAGGGT 59 NA Rattus norvegicus 81 Gkn2 ENSRNOG00000009256 ENSRNOT00000067651 2 1 1 80 4 119175239 119175258 ATCAAGATGGACCACAAAGC 59 119175300 119175952 CATGGCATTCATTGTCTGCT 59 NA Rattus norvegicus 81 LOC100361388 ENSRNOG00000030601 ENSRNOT00000042040 1 1 1 88 3 132282780 132282798 TTGTCTGCTAAACCTGCTG 58 132282710 132282728 TTACCGACATCGACCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat4b ENSRNOG00000003235 ENSRNOT00000004323 2 1 1 80 10 35732974 35733253 ACATCAAAGCCTTGTTCCC 58 35733296 35733315 AGTCAGGATAGAAGTGAGGG 58 NA Rattus norvegicus 81 Hoxd12 ENSRNOG00000001587 ENSRNOT00000068636 2 1 1 115 3 61597960 61597978 CAACTTGAACATGGCAGTG 58 61598215 61598233 ATGGTTTCCTCTTCTTGCG 58 NA DesignNoJunction Rattus norvegicus 81 Plaa ENSRNOG00000007753 ENSRNOT00000010621 2 1 1 80 5 113567882 113567988 CATGATGACATTACAGGGTCAC 59 113567823 113567844 GATCCAGTTAACATTAAGCCCT 58 NA Rattus norvegicus 81 Hist1h2bk ENSRNOG00000055512 ENSRNOT00000089643 1 1 1 60 17 44527621 44527639 ATCTCTTCCAAGGCCATGG 60 44527579 44527597 CGATGCGCTCAAAGATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tecrl ENSRNOG00000001912 ENSRNOT00000002621 3 1 1 80 14 26677041 26697186 AGTTTCACAAAGCATGTCCA 58 26700296 26700315 AATCCTTCAAGTACGGACCA 59 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178,ENSRNOT00000021189 2 2 2 80 3 11836444 11837398 TCCTGAAGAACGGTATCACTG 60 11836384 11836403 TGATCTCACTGTCTTCTGGG 59 NA Rattus norvegicus 81 Cks1b ENSRNOG00000042561 ENSRNOT00000055533 3 1 1 81 2 188742566 188742585 TCTGAATGGAGAAATCTCGG 57 188741940 188742523 GTAAGATGTGAGGTTCTGGT 57 NA Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763 2 1 2 80 13 82600393 82602389 TACAGACAGAGGTAAATCGTGAG 60 82600335 82600356 GACGTTCAAAGTGATACTGTGG 60 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000088484 3 1 2 175 18 79773962 79813617 AATTAAAGGTGCTTGCTGCA 59 79813755 79813773 TCTGCTGCGATCCATTAGG 60 NA InUTR Rattus norvegicus 81 Taf2 ENSRNOG00000034022 ENSRNOT00000040836 3 1 1 80 7 94714832 94714853 GAACATGGAGTCTCCTTTATGC 59 94712317 94714791 CAGTCATGTGCAGTACCAG 58 NA Rattus norvegicus 81 Gcc2 ENSRNOG00000000823 ENSRNOT00000001092 3 1 1 80 20 27841719 27841739 CTGAACAACAGTGTCTGTGTC 60 27841775 27842939 CTTCCAGTTTAGTTACAGAATCCTC 59 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 2 2 2 80 3 56063603 56067503 CCACACCCAGAATATGGAC 58 56067546 56067565 CTCTGTGATCGTAGTCTGTC 57 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 1 1 1 67 8 37704183 37704201 TGCAATATGGTACATCGCT 57 37702374 37704155 GTCAAGACTCAATAAAGAGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rab2b ENSRNOG00000012488 ENSRNOT00000060467 3 1 1 80 15 28684797 28685013 CATCACAAGACGTGAAACCT 59 28684736 28684755 ATAACCATGTTGGAGCTGGA 59 NA Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 1 1 1 83 5 122508481 122512586 AACAACGTTTCTGTCTGTACAG 59 122512630 122512648 TTCCATCCGGACTTGAAGG 59 NA Rattus norvegicus 81 AABR07002623.1 ENSRNOG00000038251 ENSRNOT00000058230 3 1 1 81 1 77782840 77784012 CGTTCTCTGACCTCCTATACC 59 77784054 77784073 TGAAATGTTGTTCCAGCTCC 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 2 2 2 80 3 114362115 114362930 GTGTTTAGCGTATGCTGCC 60 114362973 114362992 CAGGTGATGACAAACAAGGC 60 NA Rattus norvegicus 81 Klhl2 ENSRNOG00000029441 ENSRNOT00000047223 2 1 1 80 16 26838128 26838147 ATGCTACGACTTCAAAGAGG 58 26838190 26840088 ATATACACCATCCCTGCCC 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 2 2 2 80 1 56339167 56345996 CTCCACAAGGTATGAGCAG 58 56346040 56346058 CTGTTCTTGTACAGGTCCC 58 NA Rattus norvegicus 81 Ndnf ENSRNOG00000006857 ENSRNOT00000009094 1 1 1 60 4 96563789 96563808 GTTTCTACGGTTTGCTCCAG 59 96563828 96563849 ACAAGAGTGAATAAAGAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Svip ENSRNOG00000037137 ENSRNOT00000056024 2 1 1 100 1 107371453 107371471 GGATATCCAGTCGGTGGAG 59 107368950 107371390 ACACTGTCCATCTAAGTCCC 59 NA Rattus norvegicus 81 Lrwd1 ENSRNOG00000001429 ENSRNOT00000001940 1 1 1 80 12 23586852 23586872 GGATCTACGATGTTGAACACC 59 23586913 23587026 ACTTCAGGATCTGTGTTGGG 60 NA Rattus norvegicus 81 Olr837 ENSRNOG00000033505 ENSRNOT00000041134 3 1 1 60 5 59278993 59279012 CTCTCCTTCCTGGACATCTG 59 59278952 59278970 GGAAGCTGTCCAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 1 2 2 83 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555763 208556046 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Ccdc178 ENSRNOG00000022156 ENSRNOT00000050933 1 1 1 80 18 13018770 13020372 ACTTGTAAAGTTGCAGGAAGAG 59 13018711 13018731 CTTAAGATGTGGTCGAACACG 59 NA Rattus norvegicus 81 Ccdc178 ENSRNOG00000022156 ENSRNOT00000050933 2 1 1 80 18 13018770 13020371 CTTGTAAAGTTGCAGGAAGAG 57 13018710 13018730 TCTTAAGATGTGGTCGAACAC 58 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 1 2 2 80 9 74234375 74235276 ACCAATTTCCAGGTGACCA 59 74235318 74235338 GTAGTGGAACAGACTCTTGGA 59 NA Rattus norvegicus 81 Fuom ENSRNOG00000018476 ENSRNOT00000024976 1 1 1 86 1 212566583 212566601 CCAGTGACAAGGAGAAGGG 60 212565353 212566535 TCAGGGCTTTCTTACAGTCAG 60 NA Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 3 1 1 80 4 150139323 150139420 CATGATGGCCATCATATCTGG 59 150139462 150139480 TTGGCTGTCTTGACTTTGG 58 NA Rattus norvegicus 81 AABR07002938.1 ENSRNOG00000037415 ENSRNOT00000056615 1 1 1 86 1 89871245 89871269 CTTGACTTGGAGACTATAAGAAGAC 59 89871180 89871205 CCTTCTCTTGAGATGTTCATCTC 59 NA Rattus norvegicus 81 Zp3 ENSRNOG00000001434 ENSRNOT00000001952 3 1 1 80 12 23736278 23736424 ACTTCCCAGAGTTGGTCAC 59 23736216 23736237 GCTTGAATTACTACAGTTGCCA 59 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860,ENSRNOT00000065431 2 2 2 80 19 57101887 57101907 AAGCTCTATTTCGAAGAGCTG 58 57101949 57103648 TCGGAATGAGATCTCCAGG 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000032835 ENSRNOT00000040815 3 1 1 60 18 6587041 6587060 CAGAATCAAGCGATTCCTGG 59 6587000 6587020 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc14a2 ENSRNOG00000056021 ENSRNOT00000078519 3 1 1 80 18 74520073 74520766 GAGGGACTTAAAGACAAATCTCC 59 74520015 74520036 GTTCACAAACATCACCTGAGAC 60 NA Rattus norvegicus 81 Mbnl2 ENSRNOG00000010737 ENSRNOT00000014300 1 1 1 80 15 105756860 105756878 ACCATGATCGACACAAACG 59 105756921 105756941 TTTGCATTTCTCCCTCATGC 59 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000077465 2 1 2 80 8 21489303 21489321 ACCCAGATCAGAGAACCCT 60 21481708 21489263 TGATGAGCTGATATCCTACTGTG 60 NA Rattus norvegicus 81 RGD1563812 ENSRNOG00000031864 ENSRNOT00000042547 1 1 1 60 13 96196202 96196220 CACCTTCACCATTACAGGC 59 96196243 96196262 GATGCTGGGAAGCATTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC136661.1 ENSRNOG00000037380 ENSRNOT00000047772 1 1 1 80 1 91746970 91746988 CTGGACAACTTTGCCAAGG 59 91747030 91747054 ACACAGTCTCTTTCCAGAAGG 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 3 4 8 86 6 128078983 128079003 GGCATCAAAGAAGTCTTCTCC 59 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Il27 ENSRNOG00000019170 ENSRNOT00000025950 2 1 1 142 1 198007001 198007019 TGAGGTTCAGGGCTATGTC 59 198005732 198006812 AGAGTCTGTCAGAGTCAGAG 58 NA Rattus norvegicus 81 Efs ENSRNOG00000042029 ENSRNOT00000022514 2 1 1 80 15 33583626 33583645 TTCCGACTCCATCTACAAGG 59 33583473 33583584 ACATCATAGACCTCTCCCAC 58 NA Rattus norvegicus 81 Gltscr2 ENSRNOG00000013023 ENSRNOT00000017555 2 1 1 80 1 77841294 77841312 AAAGCATCTCCAGAAACCC 58 77840804 77841250 GCAAGGATGTCTTTGGGAG 59 NA Rattus norvegicus 81 S100a13 ENSRNOG00000012393 ENSRNOT00000016519 3 1 1 80 2 189907096 189912287 CCTCATTTGCTCAAGGATGTG 60 189912328 189912347 GAACTTCAGCTCCGAATCCT 60 NA Rattus norvegicus 81 Ajuba ENSRNOG00000012791 ENSRNOT00000017753 3 1 1 80 15 33211105 33212428 GATTCTAGAGAAGATCCTCCAG 57 33211046 33211064 AGGCACTTGTTACAAACGA 58 NA Rattus norvegicus 81 Rn60_2_2280.3 ENSRNOG00000049591 ENSRNOT00000074779 3 1 1 60 2 208514334 208514352 GAGATGATGACGTTCCCGA 59 208514292 208514312 TTCCTTTAAAGTCCCGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360333 ENSRNOG00000042026 ENSRNOT00000067020 1 1 1 60 17 5311854 5311873 CAAAGGAAGAAGTGGCTAGG 58 5311894 5311914 TGTAGATGAGAAGAACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nav3 ENSRNOG00000052157 ENSRNOT00000082100 1 1 1 80 7 52318387 52335395 GCTATCTGGTGAAGACCCT 59 52318325 52318343 GTCTCTTCCAAGTTCTGCC 58 NA Rattus norvegicus 81 Cux1 ENSRNOG00000001424 ENSRNOT00000059486 1 1 1 80 12 23327663 23347171 TAATTGATGTTCCAGATCCCGT 60 23347212 23347230 CAATGTCGTGTAGACGCTG 59 NA Rattus norvegicus 81 AABR07049136.1 ENSRNOG00000058501 ENSRNOT00000051752 2 1 1 60 5 107505352 107505373 CCTCATACTCATAACCTCAGGA 59 107505313 107505331 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688452 ENSRNOG00000039076 ENSRNOT00000014598 3 1 1 88 1 59705213 59705231 GAGGACTCCAAGATACGCA 59 59705278 59706077 CTCCTCTCATCATAGTTGATTTCC 59 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086,ENSRNOT00000042606 1 2 2 80 15 61910252 61913777 AGTCATTTATGGAGTCTGGTG 58 61913817 61913837 GAGGGTTGATTTCAACTTTCC 58 NA Rattus norvegicus 81 Upk3b ENSRNOG00000023686 ENSRNOT00000037639 1 1 1 80 12 23681966 23682141 CTGAGTCTAGACCTGATTCCC 59 23681906 23681924 AGAGAACGTAGTGGCTGTG 60 NA Rattus norvegicus 81 Celf3 ENSRNOG00000020875 ENSRNOT00000028324 3 1 1 80 2 195725578 195725990 CGAGAGTCGAGGAGAAGAC 59 195726033 195726052 AACATCTTCCGGACATCCTC 60 NA Rattus norvegicus 81 Hfe2 ENSRNOG00000021200 ENSRNOT00000028781 1 1 1 80 2 198657482 198657500 AACGACTTCCTCTTTGTCC 57 198657543 198658074 GATAGTGATCTTCCGGATGG 57 NA Rattus norvegicus 81 AABR07035818.1 ENSRNOG00000059116 ENSRNOT00000044841 3 1 1 101 12 23467895 23469013 TCTGGTCTTTCTGGTGCTG 60 23469254 23469273 AATTTGTGCAGATGATCGGC 60 NA Rattus norvegicus 81 Ssfa2 ENSRNOG00000005865 ENSRNOT00000008046 1 1 1 80 3 66618317 66618335 GATGATGGACTTGGAGCTG 58 66618378 66618750 ACTTCATACCTGTCCTCCTC 58 NA Rattus norvegicus 81 LOC686411 ENSRNOG00000049738 ENSRNOT00000072579 3 1 1 97 1 225628505 225631413 GCTATGAAACTAATGCTGGCA 59 225628428 225628447 CTCAAGTTCCTTCCTCAGGT 59 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403,ENSRNOT00000064250 1 2 2 80 18 61323857 61328532 AGAGTTGGCTTTCGATGTG 58 61328575 61328594 GTGAGAGCCTTGAATGTGAG 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000046466 ENSRNOT00000071822 2 1 1 91 15 29993490 29993603 TTTCTTCTGAGAGTTGCCCA 59 29993418 29993436 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 LOC498555 ENSRNOG00000038074 ENSRNOT00000057931 1 1 1 60 15 75067625 75067647 AGATGAGAAGAAAGAGGAGTCTG 59 75067667 75067685 ATCAAACAGGCCAAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181b1 ENSRNOG00000035590 ENSRNOT00000053713 1 1 1 60 13 54952936 54952955 TCAACATTCATTGCTGTCGG 59 54952977 54952996 GCATTCATTGTTCAGTGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 3 2 2 89 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789126 GAGTACAATTTGTGGCCAGC 60 NA Rattus norvegicus 81 RGD1559459 ENSRNOG00000042714 ENSRNOT00000065079 2 1 1 80 14 22938137 22939660 AGTATTAGGAAGACCCACTACAC 59 22939700 22939718 TCCAAATCCCAGTAGGTCC 58 NA Rattus norvegicus 81 Rnase13 ENSRNOG00000039500 ENSRNOT00000060539 2 1 1 60 15 28323206 28323226 GAACTACAACGAGTACTGCAC 59 28323166 28323185 CAGGGTACAGACAGTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 1 1 2 92 20 3178451 3178626 CATGTTCTAGGCAGCAAGG 59 3179225 3179244 TGCCCAGTCATTCAAATGTC 59 NA InUTR Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 2 1 2 93 20 3178451 3178626 CATGTTCTAGGCAGCAAGG 59 3179225 3179245 ATGCCCAGTCATTCAAATGTC 59 NA InUTR Rattus norvegicus 81 Gata2 ENSRNOG00000012347 ENSRNOT00000017240 2 1 1 80 4 120140186 120140672 AAGCTGCACAATGTTAACAGG 60 120140713 120140732 GGATTTGCTGGACATCTTCC 59 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 3 2 2 80 19 44064405 44065801 AAGTTAAGGTAGCAGAGGAGAC 59 44064346 44064370 CTTTAGGTTTCTCTAGTTCATCTGC 60 NA Rattus norvegicus 81 Mc4r ENSRNOG00000018692 ENSRNOT00000025223 1 1 1 60 18 62613548 62613569 TGATTGGAGTGTTTGTTGTCTG 60 62613509 62613532 GAGATGTAGAACAGTAAATGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 1 2 2 80 7 125230555 125230573 AAGAGCGCCATCAATTCTC 58 125230615 125232681 CTCCTCATTCTCCTCTAGCTG 59 NA Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000077580 2 1 3 221 3 147487142 147487160 TCACTTCCCTTTCCTCTGG 59 147478073 147478091 ATACAGGCACAAAGTTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100359766 ENSRNOG00000049553 ENSRNOT00000074483 2 1 1 91 15 29623448 29623561 TTTCTCATGAGAGTTGCCCA 59 29623376 29623394 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138,ENSRNOT00000073528 1 2 2 80 1 1776471 1777798 GTCAGATATTATCACTGACTGGG 58 1777838 1777856 TAGCTACAACATGCTGCTG 58 NA Rattus norvegicus 81 Pih1d2 ENSRNOG00000009965 ENSRNOT00000013242 1 1 1 81 8 55052879 55052897 CAATCAGCCACTCATCCTG 58 55052940 55054195 CAATGATGGTACAAGCATCTG 58 NA Rattus norvegicus 81 St5 ENSRNOG00000013934 ENSRNOT00000064902 3 1 1 80 1 174151689 174152302 CAGAATACAGCAGTGAAACCT 58 174151629 174151647 GTAAGCGCCTACAATAGCC 59 NA Rattus norvegicus 81 Rpl12 ENSRNOG00000016220 ENSRNOT00000021725 3 1 1 80 3 12009690 12009954 GAGATCAAAGTCGTGTACTTGAG 59 12009994 12010012 CAGAGGACCGATCTTAGGG 59 NA Rattus norvegicus 81 Cenpc ENSRNOG00000021776 ENSRNOT00000031074 1 1 1 80 14 23654488 23662231 CACAAATTAGTATTGCCCTCCA 59 23662272 23662290 TCGCCAATATTCCAGAGGT 59 NA Rattus norvegicus 81 Cenpc ENSRNOG00000021776 ENSRNOT00000031074 3 1 1 80 14 23632316 23632334 CTTCAAGGAGGAAGGAAGC 58 23632377 23635055 CTTCATTAGCCTGAACTGGT 58 NA Rattus norvegicus 81 Scube1 ENSRNOG00000010617 ENSRNOT00000017727 2 1 1 80 7 124504036 124504477 CTATGACGAGGACTACCAGC 60 124503975 124503993 ATCTCCTGATGGTTCTCCG 59 NA Rattus norvegicus 81 Slc25a17 ENSRNOG00000018920 ENSRNOT00000025758 2 1 1 88 7 122547366 122548922 GCATCATCGATGCATTCCA 59 122547296 122547314 GAAGACCAACAGCAAGGAG 59 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634,ENSRNOT00000067895 3 2 2 81 4 161652971 161653514 GTCATCCTACATGGCATCGA 60 161652909 161652927 AGAGAACTTGAGGCTTGCT 59 NA Rattus norvegicus 81 Gpr119 ENSRNOG00000024517 ENSRNOT00000033619 1 1 1 80 X 135519533 135519551 CTGATGGCAGTACACAACC 59 135516844 135519490 TGTACAGCGTCTTTCTTCCT 59 NA Rattus norvegicus 81 AC139873.4 ENSRNOG00000061643 ENSRNOT00000091724 2 1 1 60 3 73896480 73896499 GTGGTCCTTGTTTCTTACCT 58 73896439 73896460 CTTCAGCAGAATTCATTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 3 2 2 80 1 78460733 78470359 AGCTCACAAGATCAACGAC 58 78460671 78460689 TCATGGTTCTCCTTAGGGA 57 NA Rattus norvegicus 81 Mllt11 ENSRNOG00000021110 ENSRNOT00000028664 3 1 1 85 2 196394261 196402084 TTGCTAACAGGGAATCATGC 59 196394195 196394213 GATCCAGTTCTGGGATGGG 60 NA InUTR Rattus norvegicus 81 RT1-T24-1 ENSRNOG00000032596 ENSRNOT00000041502 2 1 1 104 20 3281459 3281787 CTTTACCCGAACTGACCCT 59 3281855 3281873 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 3 2 3 80 19 10149366 10149668 CCCTAGCCTTCAAGAGACC 59 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 AABR07052798.1 ENSRNOG00000046348 ENSRNOT00000071912 2 1 1 60 3 75769010 75769031 CTGCATCTTTACCGATGTTGAG 60 75769051 75769070 CTTGTACCGATCAAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chtf8 ENSRNOG00000047246 ENSRNOT00000070822 2 1 1 98 19 39080435 39080852 TACACCACTGAGGGAATCC 58 39080355 39080373 GTGTTTGACAAGGACTGCA 59 NA Rattus norvegicus 81 LOC100362830 ENSRNOG00000027694 ENSRNOT00000011545 1 1 1 60 5 169021892 169021911 GGCTAGTTCGTGAATTGGAG 59 169021851 169021871 CTCTGAGCAATGAAGACTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802,ENSRNOT00000066101 3 2 2 80 3 116948833 116949850 CTTATAACCCAGCCAAGTGC 59 116949893 116949911 CATGGTGATCCCTGTCCAG 60 NA Rattus norvegicus 81 Nlrp4a ENSRNOG00000042030 ENSRNOT00000043739 3 1 1 80 1 69369785 69377885 GTCCTCAAGTCACTATGTTTGAG 59 69369727 69369748 GTTGTTCCTTAAGACTTCAGCC 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778,ENSRNOT00000086250 2 2 2 80 20 21978230 21981497 CACCATATTCAACGAAGCAGG 60 21978170 21978190 GTTATGGAAGATTCCTCTGCG 59 NA Rattus norvegicus 81 Pom121 ENSRNOG00000001449 ENSRNOT00000001968 1 1 1 80 12 24334268 24334287 GAAGACCTGGACATGGAGAG 60 24334330 24334804 GGTAGAGGCATCATCCGTC 60 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 1 2 2 80 4 56437994 56438012 CAGTGATCAGCTGGAAGAG 58 56434575 56437952 GCTTTACTCCCTTTCTCTGTC 59 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000038257 1 1 2 89 19 57651011 57651029 TATGAAGGGAGAGGAGGCA 59 57651080 57653039 GTGGTAGACCTCTACAAGGTC 59 NA Rattus norvegicus 81 Atg14 ENSRNOG00000011873 ENSRNOT00000016274 3 1 1 82 15 24348166 24349310 AAAGCTGTGCAACAGTGAG 59 24348102 24348120 TGTTTGCGTTCAGTTTCCT 58 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000024077,ENSRNOT00000085395 3 2 2 80 1 170262335 170262353 TTCTCAACAGCAGTAGTGC 58 170262396 170269734 CCATCTCCAATTCTCTGGTC 58 NA Rattus norvegicus 81 Znf740 ENSRNOG00000012192 ENSRNOT00000016240 1 1 1 80 7 143814023 143814348 GTGTTCCAGTCAGATGGAC 58 143814391 143814410 TTGCGGGATTTATCACTGTC 58 NA Rattus norvegicus 81 Ccdc74a ENSRNOG00000001876 ENSRNOT00000002567 2 1 1 80 11 87552593 87552612 CTCAAGTCACTCCTGGAAGG 60 87552655 87552747 GTCCTGGTCCTTTGGAGAG 59 NA Rattus norvegicus 81 Thrap3 ENSRNOG00000009977 ENSRNOT00000013570 1 1 1 80 5 144181673 144185186 GATCAAAGAAGCAGAAGAAGCA 59 144181614 144181632 AGGAGTGAGATGACTGGGA 59 NA Rattus norvegicus 81 Tph2 ENSRNOG00000003880 ENSRNOT00000005157 1 1 1 80 7 58058282 58058300 CCTTTGCAAGCAAGAAGGT 59 58043709 58058241 GAAAGAGCATGCTTCAATTCTC 58 NA Rattus norvegicus 81 Kcnmb3 ENSRNOG00000027836 ENSRNOT00000058860 3 1 1 169 2 118874813 118874832 GCATAAGCAATGGAGATCCC 59 118870404 118874681 TTCTTCTCTGGGAGAGCTG 58 NA Rattus norvegicus 81 Adamtsl5 ENSRNOG00000033787 ENSRNOT00000060811 2 1 1 174 7 12229457 12230185 CTCTGAGCAACTGACCCTC 60 12231617 12231636 AGTGATCAGCAGAATCGGAG 60 NA InUTR Rattus norvegicus 81 Fbxl22 ENSRNOG00000017684 ENSRNOT00000023810 1 1 1 87 8 72204346 72204364 TGATTTCCTCCTGCAGGTG 60 72202049 72202067 TAAGCAGTCATCCGTGACG 60 NA DesignNoJunction Rattus norvegicus 81 Stx1a ENSRNOG00000029165 ENSRNOT00000049601 1 1 1 80 12 24696686 24696972 GAGTTCTTTGAACAGGTGGA 58 24696625 24696643 GTGTTTCCTCTTCACCTCC 58 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000084057,ENSRNOT00000007602 3 2 3 139 6 131888523 131888541 GATTACTTCACCTCTGCGT 57 131838879 131888421 CATCTTTACACTGGCATCCA 58 NA Rattus norvegicus 81 RGD1561212 ENSRNOG00000024283 ENSRNOT00000043949 1 1 1 81 5 120877526 120878423 AAAGAGTTGTCCAGATGCC 58 120877463 120877484 GTTTCAAGTCTGACATTGAGAG 57 NA Rattus norvegicus 81 Pnmt ENSRNOG00000046057 ENSRNOT00000073486 2 1 1 82 10 86341865 86341993 CATCGAGGACAAGGGAGAG 59 86342039 86342057 GCACATCAATGGGCAAGAC 60 NA Rattus norvegicus 81 LOC100125367 ENSRNOG00000005558 ENSRNOT00000007341 1 1 1 105 13 111891038 111891502 GAACGCATGGGATCTTTCTC 59 111891565 111891588 CATGAGATCTGGAAGTTACATGAC 59 NA InUTR Rattus norvegicus 81 Gjb3 ENSRNOG00000014372 ENSRNOT00000019266 3 1 1 60 5 145391488 145391506 CTGCTACCTCATCTTCCAC 57 145391446 145391464 GCTCTTCGTCGATTTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl10 ENSRNOG00000016749 ENSRNOT00000022687 1 1 1 80 10 88372295 88372484 CATGTATACGCAGTAGGTGG 58 88372526 88372545 CCAAGTATTAGCCACTGGAC 58 NA Rattus norvegicus 81 Mlph ENSRNOG00000019763 ENSRNOT00000080449 3 1 1 89 9 98092557 98092576 TCTGATGAAGACAGCATCCC 60 98092627 98094937 CTCCGAGATCTGAGTCTCAG 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669,ENSRNOT00000003526 3 2 2 80 17 90737505 90737524 CAACACCAAAGAACTGGACG 60 90735506 90737465 TCTTTGCTTTCGTTACTTAGGG 59 NA Rattus norvegicus 81 Flywch2 ENSRNOG00000004461 ENSRNOT00000005899 1 1 1 84 10 13112390 13114875 GAACCTGGATACAGGTGGAC 60 13112325 13112343 CTTAGGGAGTGCAGTGGTC 60 NA Rattus norvegicus 81 Lix1 ENSRNOG00000012988 ENSRNOT00000017442 3 1 1 80 1 59209706 59209726 CAACTACTTCACTGGAATGGA 58 59209763 59212371 GGAATAATAGGAGATGACTTCCTG 58 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000009521 ENSRNOT00000012614 2 1 1 60 15 86123327 86123345 ATGATCACAGCAAGGAGGG 60 86123285 86123304 TCCTGGTTCTCGTACTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015525.1 ENSRNOG00000056900 ENSRNOT00000087833 3 1 1 60 14 61750560 61750579 TGTCTGTGTTCTGAAACAGC 59 61750600 61750620 GTATCCAGCATACAAACCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg4c ENSRNOG00000008767 ENSRNOT00000011631 2 1 1 80 5 117905101 117905122 TAAGCCTTGAGTATTGTGTTGG 59 117905160 117905832 AACTGTCATCTTGAAATCCAGC 59 NA Rattus norvegicus 81 LOC684841 ENSRNOG00000049198 ENSRNOT00000074024 2 1 1 82 17 43791889 43791907 ACTTCAAGACCGACCTTCG 60 43791952 43791971 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dach1 ENSRNOG00000008834 ENSRNOT00000011926 3 1 1 80 15 82138920 82139392 CTCCGGGTCTTAAATGACTC 58 82138859 82138879 TATTGTCCTTTCAGCATCTGC 59 NA Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 2 1 1 80 9 81885697 81885716 TCTTTCAACTGGTTAGCCTC 58 81885758 81887212 GCAAGAAGTTCTTGAAGCAG 58 NA Rattus norvegicus 81 Apobec1 ENSRNOG00000015411 ENSRNOT00000020735 1 1 1 80 4 155390059 155398192 CACTCTGAGGAGAAGAATTGAG 58 155390000 155390018 AGCAGACAGGTCTCTTTCC 59 NA Rattus norvegicus 81 Npepl1 ENSRNOG00000028384 ENSRNOT00000034915 2 1 1 80 3 172198814 172199215 CATCTTCCTTGAGGAGATTAGC 58 172199254 172199274 GTCTTTAGCTGTTCATCACGG 59 NA Rattus norvegicus 81 Olr349 ENSRNOG00000057094 ENSRNOT00000080145 1 1 1 60 1 229927614 229927633 TTGTAGCCTTTGCTAGTGTG 58 229927573 229927591 GCATAGCGATCATAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlrad2 ENSRNOG00000033503 ENSRNOT00000055947 2 1 1 153 5 155914958 155915960 AAGTGTTGGAAGGTCCCTG 60 155914823 155914841 TTACAAGCTGCACAACACC 59 NA Rattus norvegicus 81 AABR07059478.1 ENSRNOG00000047774 ENSRNOT00000075169 3 1 1 90 4 21051554 21051772 TGTATAATAAGGGCATGGCCA 59 21051484 21051503 TCATTACCACCACTGACCAG 60 NA Rattus norvegicus 81 LOC102548369 ENSRNOG00000031960 ENSRNOT00000041344 3 1 1 60 15 100303732 100303751 CTTCGGATGCAAGAAGACAG 59 100303691 100303709 GATGAGCCCATTTCCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1 ENSRNOG00000020117 ENSRNOT00000027258 3 1 1 81 1 220330336 220330354 GGAGGCAGATGAGAGTGAG 59 220330398 220330522 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 Pnisr ENSRNOG00000008782 ENSRNOT00000061139 1 1 1 80 5 35997773 36000094 CAAGATCCAAGCCAGATTGAC 59 36000136 36000154 GATGCTTTGCTGTCCTGAG 59 NA Rattus norvegicus 81 Ak4 ENSRNOG00000045738 ENSRNOT00000070967 3 1 1 80 5 120281490 120301649 CTGGCTATTAGATGGATTCCC 58 120301688 120301709 CTGATTACTAGGTCCACATCAC 58 NA Rattus norvegicus 81 Usp11 ENSRNOG00000009049 ENSRNOT00000051956 3 1 1 80 X 1689275 1689581 GAACCCTTGGTATTGCTCCT 60 1689214 1689234 AGAACTTCAGGTAGCATCCAG 60 NA Rattus norvegicus 81 Tmem241 ENSRNOG00000023412 ENSRNOT00000029274 1 1 1 80 18 3527496 3527514 GAAGTTCTCACCTGTGGGT 59 3510281 3521516 GAGGAAGAGGGCACTACAG 59 NA Rattus norvegicus 81 Rnf40 ENSRNOG00000018840 ENSRNOT00000025499 1 1 1 80 1 199040379 199040400 AACTCTGGCTACTATGTGTCTG 60 199040439 199041221 CATCTCAAACTTCTGCATGCT 59 NA Rattus norvegicus 81 Chpt1 ENSRNOG00000058271 ENSRNOT00000080939 3 1 1 80 7 29056744 29056762 AGCCAGAAGGACAAATTCC 58 29055791 29056703 GCCATAAATACTGTGGAAAGAG 57 NA Rattus norvegicus 81 Impdh1 ENSRNOG00000020032 ENSRNOT00000027173 1 1 1 80 4 56484911 56484929 AAGACACCACTGATCTCGT 58 56484730 56484867 AATTCCTCCCATGAGAGCC 59 NA Rattus norvegicus 81 LOC100911637 ENSRNOG00000048471 ENSRNOT00000070854 3 1 1 60 3 149741858 149741878 AAGAAGGAAGAGGAAGACGAC 60 149741899 149741918 CTTCCTCTTCCTCCTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam1 ENSRNOG00000020679 ENSRNOT00000028066 3 1 1 81 8 22043760 22044434 GGACTTTCGATCTTCCGAC 58 22044479 22044497 CACAAGAACTTCTGCTGGG 59 NA Rattus norvegicus 81 Fam71e1 ENSRNOG00000031739 ENSRNOT00000043724 3 1 1 61 1 100505379 100505397 CTGAGGATGAGGATGAGGT 58 100505422 100505980 CTCTGTGGCATGAAACTCC 59 NA DesignRelaxed Rattus norvegicus 81 AABR07062129.1 ENSRNOG00000048726 ENSRNOT00000010098 2 1 1 84 4 162300255 162300273 TAACTGGACATTGAGCCAG 57 162300320 162300905 TAGGAAATTCAGCTCCTCCT 58 NA Rattus norvegicus 81 Dock3 ENSRNOG00000014576 ENSRNOT00000019867 1 1 1 80 8 115746706 115748602 GATGGAGAAATCTTGAAGGACTG 59 115746648 115746671 GTAGAGAACAAAGGAGTGATAGGA 60 NA Rattus norvegicus 81 Unc5b ENSRNOG00000000567 ENSRNOT00000038537 3 1 1 83 20 30355367 30356222 CGTCTATGTGAACGGAGGT 59 30355302 30355320 GTACGTTTCTGCCAACCTC 59 NA Rattus norvegicus 81 Prg2 ENSRNOG00000008394 ENSRNOT00000011168 1 1 1 80 3 72387476 72388202 CTTTAACAAAGCTCAGTTGGTC 58 72388241 72388261 CGGAAGTTAACACTGAAACTG 58 NA Rattus norvegicus 81 Rpa2 ENSRNOG00000013005 ENSRNOT00000017549 2 1 1 80 5 150957429 150959062 AGAAGAAATCAAGAGCCCGA 59 150959103 150959123 CCTCATCAGTCAGAGTAGCAG 60 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 2 1 1 60 17 43675578 43675597 TGAATAAGGGAGTCCTGGTG 59 43675537 43675555 CTAAGCTTGAAGGAGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1ql3 ENSRNOG00000017459 ENSRNOT00000023637 1 1 1 99 17 80320148 80320166 CTTCACCTACCACGTCCTG 60 80314339 80314357 ATCTTGGGCAATTGCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Abhd4 ENSRNOG00000009244 ENSRNOT00000012837 2 1 1 80 15 32904855 32904873 ATACCTGGATCGACACCAG 59 32904917 32905480 CCTCGATCTCCATGTCTCG 60 NA Rattus norvegicus 81 Cklf ENSRNOG00000012752 ENSRNOT00000017127 2 1 1 86 19 912355 912377 CCATCATTCTCTTTCTCATAGCC 59 908332 912311 TGATAACATCAAGCAAAGGCC 59 NA Rattus norvegicus 81 Ogg1 ENSRNOG00000052140 ENSRNOT00000085766 2 1 1 128 4 145284574 145284592 AACATTGCTCGCATCACTG 59 145284684 145286951 CTCTACTTCTGGACCAGCC 59 NA Rattus norvegicus 81 Rnft1 ENSRNOG00000003805 ENSRNOT00000005064 2 1 1 92 10 73815538 73817286 TTACACGACCAAGTTATGGAG 58 73817338 73817358 GCTTCTGAAATTCAGCTTGAC 58 NA Rattus norvegicus 81 LOC100912543 ENSRNOG00000050632 ENSRNOT00000073807 1 1 1 60 3 158932022 158932040 AACTTGGCCTTTGTAGACC 58 158931980 158932000 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr-rs3 ENSRNOG00000045732 ENSRNOT00000039037 2 1 1 60 1 59903241 59903260 TCCTCTCAGTGGTAGTCCTC 60 59903200 59903218 ACAAGCCCATTACCTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330,ENSRNOT00000064780,ENSRNOT00000077402 2 3 3 80 X 142059268 142059286 AGATCATGAAAGGCAACCA 57 142055088 142059224 TGTACATGGCCACTTTCAG 58 NA Rattus norvegicus 81 Rab26 ENSRNOG00000042086 ENSRNOT00000004249 3 1 1 81 10 13894845 13894963 TTACAGCCATAGCAAAGGAG 58 13894783 13894801 TTCACATAGTCATGCAGCC 58 NA Rattus norvegicus 81 Mos ENSRNOG00000008567 ENSRNOT00000011602 1 1 1 60 5 16746939 16746957 AGCAAGTGAACAAGTGCAC 59 16746897 16746915 AGTTCAGCCCAGAAACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 3 1 1 61 X 152108567 152109992 TCCAGAGTAAGCCTGATGG 59 152108524 152108543 TTGTTGCTAAATGCCTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Atad2 ENSRNOG00000025604 ENSRNOT00000008508 3 1 1 80 7 97995758 97999981 GTAAACGAATGAACAGGCGA 59 98000022 98000042 AGCATTCATCTTCAGAGGAGG 60 NA Rattus norvegicus 81 Chst9 ENSRNOG00000015867 ENSRNOT00000021253 1 1 1 80 18 6865158 6969997 CAGAAAGGAGTATCGGTGAC 58 6835891 6835910 ATCTTCGGGTATGTGAACCT 59 NA Rattus norvegicus 81 Maneal ENSRNOG00000025349 ENSRNOT00000038055 2 1 1 93 5 142855292 142855310 TACCTGCCATTCTGGACTC 59 142853118 142854132 TCATTGACACAAGATGGTTGTG 60 NA Rattus norvegicus 81 Klf15 ENSRNOG00000017808 ENSRNOT00000024011 1 1 1 116 4 122369902 122369920 GATGTACACCAAGAGCAGC 59 122376594 122376612 GACAACTCATCTGAGCGTG 59 NA DesignNoJunction Rattus norvegicus 81 Glra3 ENSRNOG00000049792 ENSRNOT00000075026 2 1 1 80 16 37848959 37848979 CCTCCAGTTAATGTCACATGC 59 37818462 37848923 GTTTACTCTGTAATCCATAGTCGTC 59 NA Rattus norvegicus 81 Lrrc3b ENSRNOG00000005857 ENSRNOT00000007672 2 1 1 60 15 11299144 11299164 TACTACGTGAGGCAGAATCAG 59 11299183 11299204 GCAGGGATTTCAAGTATTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hax1 ENSRNOG00000045647 ENSRNOT00000076846 1 1 1 100 2 189333248 189333272 CAGAGTTTCAAAGTTTCTAGTACCC 60 189332687 189333190 AAAGGATCTCTGTGGCTCC 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000090301 1 1 4 95 2 118547244 118584993 AGAAATATCTACCAGAAGGGAACC 60 118585047 118585065 TACACGTTGGCCAGAAGAG 60 NA InUTR Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000090301 2 1 4 97 2 118563010 118584994 AATATCTACCAGAAGGGAACCA 59 118585052 118585070 CATCATACACGTTGGCCAG 59 NA InUTR Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000077034,ENSRNOT00000076521,ENSRNOT00000087859 1 3 4 92 X 115585310 115586072 GATCCTCAGGAGAGTGCTG 59 115586928 115586946 TGGCTTTCCAGGATAACGA 59 NA Rattus norvegicus 81 Snrpd1 ENSRNOG00000013714 ENSRNOT00000018646 1 1 1 80 18 1868734 1868754 TTGAGTCATGAAACCGTAACC 59 1868795 1872133 CATGCTGACATCTACACCTG 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000048926 ENSRNOT00000075717 2 1 1 60 4 170128818 170128837 ATCCAAAGTTACGAGAAGCA 57 170128777 170128797 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbp2 ENSRNOG00000008667 ENSRNOT00000011461 1 1 1 60 4 169092881 169092902 AACTCTACACCTTGATCCTCAC 60 169092842 169092865 CTGTATATGGGTTCTTTCCTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phc1 ENSRNOG00000015191 ENSRNOT00000020529 2 1 1 80 4 155102066 155109419 AGATGCAGATCAGGTGCAG 60 155102004 155102024 TGAGTAGAGCCTGGTATTTGG 59 NA Rattus norvegicus 81 Sap30bp ENSRNOG00000005482 ENSRNOT00000007362 1 1 1 80 10 104484757 104484777 GATGAGAACAGTAAGCAGTCG 59 104487328 104501494 TTCTGTGTTATCCTTTGGGTC 58 NA Rattus norvegicus 81 Ercc6l2 ENSRNOG00000019175 ENSRNOT00000025965 3 1 1 80 17 1343065 1343086 GGAAATGTGAAATTGCTCTGAC 59 1343126 1349567 TAGCTGACCATTCCAAACTG 58 NA Rattus norvegicus 81 Fam71f2 ENSRNOG00000039383 ENSRNOT00000060353 3 1 1 80 4 56563106 56563124 CCAAAGACCCAAGGATCCA 59 56563166 56564247 TGCTTTCAGGTGTTGTTTCAG 60 NA Rattus norvegicus 81 Tbl3 ENSRNOG00000013429 ENSRNOT00000018405 1 1 1 80 10 14067525 14067630 ACTGTTATCCAGGCCATCC 59 14067463 14067481 CTGGTCTCTTCGAAGTCGG 60 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 2 3 3 80 15 4040901 4041094 CAGCTGTATCAATGATGTGCC 60 4040841 4040859 GGACGGTCATAAGCATCCA 60 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943,ENSRNOT00000080056 1 2 2 80 7 139633283 139633301 CTGTGGAATGTTTGCTTGC 58 139630564 139633239 TATGGCATGTGTTGCTGTG 59 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 1 1 1 74 8 81963917 81968420 AAAGATTGCAGAAAGGGCA 58 81968457 81968476 GCTTGTTCTTCATCTTTGCT 57 NA DesignNoJunction Rattus norvegicus 81 Cinp ENSRNOG00000008035 ENSRNOT00000010598 1 1 1 80 6 135297053 135300071 CACCTTGTTGAGTAAAGAGAAGG 59 135296995 135297015 TCCAGGTTTGTCTTCTCTTCC 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 3 4 4 80 1 81793822 81794026 CTGAGCGAGTTCAAGAACC 59 81794070 81794088 GTCTTTGGTTAGTCGCCAC 59 NA Rattus norvegicus 81 Gabarapl1 ENSRNOG00000053362 ENSRNOT00000077356 2 1 1 81 4 163297942 163297960 AGAAGGCTCCTAAAGCCAG 59 163298004 163298941 TAGAACTGGCCAACAGTGAG 60 NA Rattus norvegicus 81 Ccdc142 ENSRNOG00000022326 ENSRNOT00000035329 1 1 1 84 4 113939986 113940004 TGTCATAAGCAAGCCACAC 59 113940052 113940373 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 3 2 2 80 17 1047033 1047051 GGTCCTCGCTTACAAACTC 58 1044951 1046990 AGACGCTGTTTAGTCAACTG 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 1 3 3 80 20 3991814 3991962 CAGGAAGTTACATTGCTACCA 58 3992004 3992022 CACAACCAGACATGGTTCC 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 3 1 1 80 1 114773044 114780935 AGAGCTACAAAGAAAGCATAGG 58 114780975 114780994 ATGGAGATGACAAATCCCAG 57 NA Rattus norvegicus 81 Capn1 ENSRNOG00000020935 ENSRNOT00000028431 3 1 1 80 1 221349285 221349303 ACGGTAATGGGAAACTGGG 60 221348952 221349242 ACTTTCGGAAGATGGTCAGG 60 NA Rattus norvegicus 81 Arpc5l ENSRNOG00000014317 ENSRNOT00000019405 3 1 1 100 3 23306160 23306708 ATCAAGCTGTGAAGGAACGA 60 23306771 23306789 ATTCCTGTCCAGTGACTGC 60 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660,ENSRNOT00000038748 3 2 2 80 3 121980958 121983658 AGACCAGTATCTTTATGTTCCTCC 60 121980901 121980919 TGGCAAGTAACAGTCACCA 59 NA Rattus norvegicus 81 Rlim ENSRNOG00000002824 ENSRNOT00000091325 3 1 1 81 X 73765713 73765732 GTTGCTCAGAAGACTACAGC 59 73764435 73765670 ATCTGAAGACTCTCCAGCTC 59 NA Rattus norvegicus 81 Dpcr1 ENSRNOG00000042287 ENSRNOT00000068159 1 1 1 80 20 3612011 3612030 GCCTCTATCCTATGTTTGGC 58 3612071 3617933 CTTGAAATGTGTTAGCACCTG 58 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939,ENSRNOT00000017907 3 2 2 80 4 10666076 10668913 ATGTGGTGATCATTGTAATGGC 60 10671221 10671241 CTCCATACAAAGGCCAATAGC 59 NA Rattus norvegicus 81 Alpk3 ENSRNOG00000011659 ENSRNOT00000015898 2 1 1 80 1 142883185 142889313 GGAGGCTAGCTTATCAAGCA 60 142893245 142893265 GTAAGCTGAGCAATGATGGAG 59 NA Rattus norvegicus 81 Cts7 ENSRNOG00000033540 ENSRNOT00000043686 2 1 1 81 17 3281873 3281891 GCACACTATGCAGAATGGC 60 3281934 3282042 CATTTCCTCACCAGTCATGTC 59 NA Rattus norvegicus 81 LOC102549173 ENSRNOG00000045644 ENSRNOT00000074763 2 1 1 63 17 43807299 43807318 ATCGCTCAGGACTTCAAGAC 60 43807255 43807273 CTTCCTGTAGGGCCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdyn ENSRNOG00000026036 ENSRNOT00000037576 2 1 1 97 3 122197572 122197590 TGAGGTTACAGCAGACTGC 60 122196385 122197511 ACTCCAGGGAGCAAATCAG 59 NA Rattus norvegicus 81 Tnfaip2 ENSRNOG00000010165 ENSRNOT00000042973 1 1 1 80 6 135898167 135898187 CTTTGAAAGACCTCAAGGCTC 59 135898226 135899001 ACTTCTTAAACAGTGGCTTCAG 59 NA Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000088962 1 1 2 88 1 267495953 267495971 GAAACCAAGTGCATGGGAG 59 267496023 267507113 GTCCCACTCATAGGCTGTG 60 NA Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000016881 1 1 2 80 1 267505404 267506313 CTGAGGAAGAAGGAAATCAGG 58 267506354 267506373 GAGGAATGTCAGGTGAAGTG 58 NA Rattus norvegicus 81 Gja5 ENSRNOG00000017484 ENSRNOT00000023488 2 1 1 98 2 199162792 199181924 AAGGAAGCAGAAGGCTCAG 60 199181986 199182004 GTAGAGTGCTTGTGGACCT 59 NA InUTR Rattus norvegicus 81 Car15 ENSRNOG00000037983 ENSRNOT00000000312 2 1 1 80 11 87761004 87761446 CCATACAGTGCTACTGCGA 60 87760942 87760961 TATTCTGATGATGGGAGCCC 59 NA Rattus norvegicus 81 Timm17a ENSRNOG00000007040 ENSRNOT00000009398 2 1 1 80 13 52125099 52126071 ACAGTTTCCTAATGGCCCTC 60 52125038 52125056 TCTCCAAATGGTGAGGACG 59 NA Rattus norvegicus 81 Tnfrsf1b ENSRNOG00000016575 ENSRNOT00000022478 1 1 1 80 5 163148601 163148619 AGGCATGTTTACCCAGGTC 60 163147434 163148557 GTCTCCACCTGGTCATCAC 60 NA Rattus norvegicus 81 Vpreb1 ENSRNOG00000052348 ENSRNOT00000081776 2 1 1 172 11 88376310 88376328 GACTGCTTCCTAGCTGGTC 60 88376551 88376569 TTCCAAGGAAGGAAGAGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC679881 ENSRNOG00000017095 ENSRNOT00000023010 2 1 1 87 1 35868421 35868440 AAGATCCTTGTTCCTGAGGG 59 35868490 35868512 AGGCCTCAATATCCTGAGG 58 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 2 2 2 80 3 11708862 11708880 TCATGTCCCTGATTCAGCC 60 11708924 11712685 ACTGTAGAGTCTGCACGAG 59 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 2 1 1 61 18 75203899 75203917 AGGCCTTCAAGATGAATCG 58 75127374 75203874 CATCCCTGGAGTCATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0746.1 ENSRNOG00000051044 ENSRNOT00000075847 2 1 1 60 X 73790355 73790375 GACATGTACAAGGGATACTGC 59 73790395 73790415 CACTCATCAATCACAAGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmo5 ENSRNOG00000018076 ENSRNOT00000024423 3 1 1 81 2 199807152 199807170 ATTGTCATTGGCATTGGGA 58 199807215 199811556 TGGTACTGAGGAACACCTG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000075578 1 1 2 118 9 105944864 105946151 TCTCGCTATCTGCATCAGG 59 105946233 105946251 CTGGGAGTTCAGTCTGCTC 60 NA Rattus norvegicus 81 LOC100362219 ENSRNOG00000024053 ENSRNOT00000061058 1 1 1 92 X 5885039 5886716 AAAGCCTACATGCCAACCT 60 5884965 5884987 CCAAATAACTCTTCACTAGGTGG 59 NA Rattus norvegicus 81 LOC100362219 ENSRNOG00000024053 ENSRNOT00000061058 2 1 1 93 X 5885040 5886717 CAAAGCCTACATGCCAACC 60 5884965 5884987 CCAAATAACTCTTCACTAGGTGG 59 NA Rattus norvegicus 81 RGD1562063 ENSRNOG00000033520 ENSRNOT00000049198 1 1 1 80 7 117428876 117428896 CTACCAGAATCACTCAGAGAC 57 117428938 117429041 GAGGATCGGATAAAGCCAG 58 NA Rattus norvegicus 81 Reg4 ENSRNOG00000019046 ENSRNOT00000025821 1 1 1 80 2 200398021 200402914 GAAGTCCTGAGTGATATCTTGAG 58 200402954 200402972 CCGGAAGTACCCATAACAG 57 NA Rattus norvegicus 81 Mir500 ENSRNOG00000036262 ENSRNOT00000054385 3 1 1 61 X 16121351 16121369 TATCTGGGTGCTTAGTGCT 58 16121394 16121412 CTCACCTTCTCTGAACCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl17 ENSRNOG00000013875 ENSRNOT00000064431 3 1 1 80 9 110665287 110665306 TTATCGCAAAGGAGGGACAG 60 110531953 110665247 CAATGGCTATCAGTGCATAGTC 59 NA Rattus norvegicus 81 Mob3b ENSRNOG00000009453 ENSRNOT00000012519 3 1 1 86 5 50472702 50472721 TCAACACCTGCTACAAACAC 59 50439965 50472654 TCATCTCTTTCAAGGGCTCC 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 1 3 3 87 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Tprn ENSRNOG00000010896 ENSRNOT00000014489 3 1 1 85 3 2486810 2486832 CAGAGAAATCCTTCACAGTTCTC 59 2486877 2486982 GTAGCTGGACAGACCTGAG 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420,ENSRNOT00000072073 1 2 2 80 1 261170328 261170907 CAGTGAGTCAGGTGTCCAG 60 261170266 261170287 TTTCGGAATTCTTTAGTGTGGG 59 NA Rattus norvegicus 81 Ccsap ENSRNOG00000017690 ENSRNOT00000023911 1 1 1 82 19 56620581 56620599 AGAGACAGATGGACATGGG 59 56617756 56620537 AAGTGCTGACTCATGAATCTC 58 NA Rattus norvegicus 81 RGD1563263 ENSRNOG00000006884 ENSRNOT00000009068 3 1 1 84 3 81294572 81294590 TCAGCGATCTGTTCCTGAG 59 81294638 81294823 TCTTAGCCCGTAGTCATCC 58 NA Rattus norvegicus 81 Ino80c ENSRNOG00000016532 ENSRNOT00000022169 2 1 1 80 18 16002330 16003567 GATCCCAACTTTGTGCACTC 60 16002269 16002290 GATCTGTTTGAGGTTCTTCCAG 59 NA Rattus norvegicus 81 Gcc1 ENSRNOG00000007792 ENSRNOT00000010246 1 1 1 90 4 55711529 55712540 AAATGAGGAAGACAGCCCT 59 55711457 55711475 GAGATCTGGTTCTCCAGGG 59 NA Rattus norvegicus 81 Vmp1 ENSRNOG00000003967 ENSRNOT00000005658 2 1 1 80 10 73963170 73980856 CTTTCTGCTTTATCTGGGCC 59 73963109 73963127 GGCTCAGGGAAATTAACCG 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575,ENSRNOT00000029842 2 2 2 80 11 72801685 72801703 CAACCGTGATGTATGGAGC 59 72799839 72801643 CTGTCATGATAAACCTGCCAG 59 NA Rattus norvegicus 81 Olr717 ENSRNOG00000046433 ENSRNOT00000048787 2 1 1 60 3 78639678 78639696 ACACTTACTTCCTTGGGCT 59 78639636 78639657 AAGACCACTACAGATATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rspry1 ENSRNOG00000060931 ENSRNOT00000090217 1 1 1 80 19 10806010 10806028 TTGGAAGATCCACTGGGAC 59 10804153 10805969 TTTCTGGAGTGCATCTTTAGTG 59 NA Rattus norvegicus 81 LOC686074 ENSRNOG00000030364 ENSRNOT00000051911 2 1 1 60 18 24312807 24312826 CCAAGCTCTCCAAGATACGA 59 24312766 24312785 TTAATGACAGTGAGGACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059072.1 ENSRNOG00000050173 ENSRNOT00000070847 3 1 1 83 4 3122792 3122810 CGTTCAGCTGCTTATGCTG 60 3122725 3122748 ATAAGAGACCTGAACAACCCTC 60 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 3 1 1 60 8 117932192 117932210 AATCTCTACCGTCTCCTGG 58 117931646 117932169 GAGTATCTGGGTCCTCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 2 2 2 136 6 135198918 135198936 CTTCAACCACCTAACAGCC 59 135199030 135213007 GTGACTTGTCTATTAGTCTTTCCTC 59 NA Rattus norvegicus 81 AABR07044714.1 ENSRNOG00000053936 ENSRNOT00000089481 1 1 1 80 20 18157207 18157225 GCCCTCCTTTCCTTAACCA 59 18157268 18157289 CCACAGGAATCGGAAATCTC 59 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 1 2 2 81 1 198458188 198458208 TCAGCTTATATTTCGGACCAC 58 198456845 198458145 CACCAGTACCTTTGTTGCA 58 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 2 2 2 81 3 15052824 15056826 ATCAGCAGGTTGATGTCTG 58 15056870 15056889 TCTTCTGTTTGGAGTCTACG 57 NA Rattus norvegicus 81 Rfc2 ENSRNOG00000001457 ENSRNOT00000001989 1 1 1 80 12 25133594 25135077 GTATTCAAGGTCTGTGACGAG 59 25133534 25133552 CTCATCAATGTTGGCGTCC 59 NA Rattus norvegicus 81 Rfc2 ENSRNOG00000001457 ENSRNOT00000001989 3 1 1 80 12 25133595 25135079 ATGTATTCAAGGTCTGTGACGA 60 25133536 25133554 CATCAATGTTGGCGTCCAC 60 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000026231 2 1 2 82 1 198116553 198116687 TGTCCTAGCTGCAAGAAGTC 60 198116490 198116509 AAATCCACCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Coa7 ENSRNOG00000010636 ENSRNOT00000014401 3 1 1 65 5 127929338 127929356 TGACAGCTGTTACAAGCTG 58 127934017 127934035 TTTAGGTCCTGAGTGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Krtap15-1 ENSRNOG00000049399 ENSRNOT00000072546 3 1 1 60 11 28780580 28780600 CGGCAATGTAGTTTATTCTCC 57 28780621 28780640 CTGTCCATTGTAGAAAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000079231 1 1 2 80 X 123209963 123212613 CTCAGTTCACCTTCAAGTACC 58 123212653 123212673 CTTCATCATCCGAGTACACAG 58 NA Rattus norvegicus 81 Syna ENSRNOG00000050672 ENSRNOT00000074788 3 1 1 61 12 25161156 25161174 GAAGCCTTTCCATCAGAGC 59 25161199 25165168 CTTATGGAAGCTGGACCGA 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Trappc8 ENSRNOG00000022202 ENSRNOT00000021263 1 1 1 80 18 15299150 15311334 CTTCCGAAGTTCACATGAGAG 59 15311375 15311394 TGACAATGTTGCTTACTGCT 58 NA Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 1 1 1 82 6 138631737 138631760 CTATACCTGCAAATGGATAGTCTG 59 138631635 138631698 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 Caln1 ENSRNOG00000000886 ENSRNOT00000001185 2 1 1 80 12 29655106 29655124 CAACCGATCTCTGTCTGCA 60 29537540 29655063 GCTTCTCGGATTTCATCGAG 59 NA Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 1 1 1 60 3 73390746 73390769 GGACCTACGGTTTATATTTCTGTG 59 73390786 73390806 GGATCAGCACAATAGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 2 1 1 60 3 73390852 73390873 CACAATGATAGTTATTGCCGGA 59 73390894 73390912 TGAAATGAGAACCACCGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpa ENSRNOG00000001501 ENSRNOT00000002053 2 1 1 80 1 84000036 84001524 TCTTCAACCAGTTCCCTGG 59 83999974 83999994 CATTGTCAAACTCCACGAAGG 60 NA Rattus norvegicus 81 LOC100910068 ENSRNOG00000025725 ENSRNOT00000035678 1 1 1 80 7 116035454 116035474 AACCTTAACTGCTCGAATCCA 60 116034456 116035414 ACGTTCGAATATTCGTGTGAC 59 NA Rattus norvegicus 81 Nme7 ENSRNOG00000002898 ENSRNOT00000058897 3 1 1 80 13 82676071 82681016 CGAGTATAATGACATGGTGACAG 59 82681055 82681074 GTCTTCGTAGGATTGCTCTG 58 NA Rattus norvegicus 81 Acp6 ENSRNOG00000017494 ENSRNOT00000043194 1 1 1 80 2 199303468 199303487 CCCATTCCTCTACATCCTGG 59 199303529 199304864 TACATCTTCCTGGTCTTGCT 59 NA Rattus norvegicus 81 Rangrf ENSRNOG00000004980 ENSRNOT00000006883 2 1 1 80 10 55560120 55560221 TTGATGTGAGTGACCTCCG 59 55560058 55560078 CTATGATCAGACTCTGGTCGG 60 NA Rattus norvegicus 81 Odf3b ENSRNOG00000037060 ENSRNOT00000055805 1 1 1 169 7 130350231 130350469 AAACACCGGTTACAAACTGC 60 130350081 130350099 CATAGATGGAGAAGGCCGG 60 NA Rattus norvegicus 81 Supt4h1 ENSRNOG00000007845 ENSRNOT00000010448 3 1 1 81 10 75032983 75033003 GCATACCTACAAATGAAGGGC 60 75033045 75037142 TCATCATCGCGATGATTCCA 60 NA Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 3 1 1 80 14 62577401 62594264 TTTCTATGGATCCAGACAACCA 59 62577342 62577363 GATGACAAGAACATCTCTGGTG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 1 2 2 80 16 8316601 8316619 GCTCTTTGAAGCAGATGCA 59 8316661 8317146 TGCTCAGGAATTTGAATGGTC 59 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054,ENSRNOT00000030470 2 2 2 80 6 101786938 101795044 GGGAATGAGCTACTAAATCCTG 58 101795083 101795103 TGTTGCTAGAAGTGTTGATCG 59 NA Rattus norvegicus 81 Rn60_11_0375.5 ENSRNOG00000051106 ENSRNOT00000075943 3 1 1 60 11 33840714 33840734 AGAAGAGGTTGACTCTCACAG 59 33840756 33840774 CATACAAGTCTGTGGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd1 ENSRNOG00000018598 ENSRNOT00000025258 2 1 1 80 1 254732464 254733437 TGCGATGAGTATAAACGGAC 58 254732403 254732422 AGCCTCCATTAACTTCTCCA 59 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 2 1 1 80 3 12502825 12502843 ATTCATCCCAGATAGGGCA 58 12494594 12502783 TCTTGTTTAGTGTGGTTCGAC 59 NA Rattus norvegicus 81 Olr1393 ENSRNOG00000047749 ENSRNOT00000049754 1 1 1 60 10 34662710 34662728 CTTCTTCTGTGAGATGCCC 58 34662752 34662770 TTCTGTTCCTCCTGTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqcf1 ENSRNOG00000037289 ENSRNOT00000056391 3 1 1 96 8 115193215 115193611 GAACAATGGATGAGGAGCA 58 115193671 115193689 TCTGAGGACAGATCAGCTG 59 NA InUTR Rattus norvegicus 81 Skor2 ENSRNOG00000018006 ENSRNOT00000031993 2 1 1 103 18 73161547 73161567 AGCAAAGGATGACAACTTCTC 59 73162143 73175690 TGTGTTCACCTGATCTTTCTC 58 NA Rattus norvegicus 81 Cabp5 ENSRNOG00000014787 ENSRNOT00000020090 3 1 1 80 1 75698506 75701045 CAAATCCGAATGAACCTTGG 58 75701087 75701106 TGTTTCTGCAAGCAATTTGG 58 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000000058 3 1 2 83 13 91080503 91080744 GTCATGAAGACATGTCTAAACAGG 60 91080785 91080804 TCTTTGACTCTGCTTCCAGG 60 NA Rattus norvegicus 81 Vom2r29 ENSRNOG00000038497 ENSRNOT00000040441 2 1 1 80 1 74257795 74257813 AGAGTCATCTGCAACAGGT 59 74257854 74265851 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 Mir2964 ENSRNOG00000035452 ENSRNOT00000053575 3 1 1 60 3 8407433 8407451 GAGCTCAACCACAGATGTC 58 8407473 8407493 CAATTCTTGTACGAGTCTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689766 ENSRNOG00000021411 ENSRNOT00000029081 2 1 1 80 13 95902004 95902024 GGACAAGTGGCATAATGAGAC 59 95902063 95907633 CCTAGTTTCTTATCCCAACCGA 60 NA Rattus norvegicus 81 Copg2 ENSRNOG00000011014 ENSRNOT00000033706 2 1 1 80 4 58100396 58100949 TGCTTCGAGATGATGGAGG 59 58100334 58100352 TCTCAGGGTTCTCTTCCAC 58 NA Rattus norvegicus 81 Olr209 ENSRNOG00000045692 ENSRNOT00000041335 3 1 1 60 1 170763330 170763349 GTTCTTTCATCTTGGTCGGG 59 170763289 170763307 ACAGCACAGAGCATTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr38 ENSRNOG00000014102 ENSRNOT00000018921 2 1 1 80 3 23294075 23294093 CTGGGTCAATAGCCTAGCC 60 23294136 23294416 TCCCAGACTTTGACCATACG 60 NA Rattus norvegicus 81 Olr901 ENSRNOG00000054865 ENSRNOT00000071164 1 1 1 60 7 5325037 5325059 CTCATGTCCTAGAAATGATGTCC 59 5325077 5325097 ACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp7 ENSRNOG00000025496 ENSRNOT00000046232 2 1 1 80 10 7015803 7015821 CACGGACTTTGAGAACAGG 59 7015860 7016495 GGGTATAGTGTTATTTCCTCTTCC 59 NA Rattus norvegicus 81 AABR07062154.1 ENSRNOG00000061420 ENSRNOT00000081340 3 1 1 60 4 162831459 162831478 CATCAGCTATGGAGACAGAC 58 162831418 162831437 AGATTGCTGCTTGAGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp638 ENSRNOG00000014501 ENSRNOT00000019617 1 1 1 80 4 115631243 115636566 GCAGTTACGTCAACAATACCC 60 115638112 115638130 CGGTGGCAAATTCTTGGAC 60 NA Rattus norvegicus 81 Olr1870 ENSRNOG00000045610 ENSRNOT00000044955 3 1 1 60 7 9342383 9342404 CCTTAAACCATCAGTCAAGCAG 60 9342422 9342443 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zyg11a ENSRNOG00000010885 ENSRNOT00000014514 3 1 1 80 5 127801721 127803099 TTCCATTTGACAGGTTTGACG 60 127801661 127801680 CCATCATCTGCATCTTTGGG 59 NA Rattus norvegicus 81 Il22 ENSRNOG00000007365 ENSRNOT00000009776 2 1 1 93 7 61236204 61236222 CTTTATGCTGGCCAAGGAG 59 61236683 61236817 ATCCTTGGCTTTGACTCCT 59 NA Rattus norvegicus 81 Misp ENSRNOG00000010423 ENSRNOT00000013857 2 1 1 84 7 12699202 12700528 AAGGAGTCGTGGTATGCAG 60 12698269 12698287 TCTTGTGTCGCTTTACCCT 59 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487,ENSRNOT00000051883 3 2 2 80 1 123960025 123970481 CATTTGGCTACAAATGTCTTGG 59 123959966 123959986 AAACGAACATTCTTCACTCCG 59 NA Rattus norvegicus 81 Mrpl35 ENSRNOG00000008546 ENSRNOT00000012021 1 1 1 80 4 99741316 99741334 AGAAAGACAGTGAAGTCGG 57 99739989 99741273 CTTATAGCCAGCCTTTCTCC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 2 3 3 80 17 6187161 6187183 CAAGAATGAATATGGGAAGGACG 60 6177174 6187124 GGGTTTGTCTCATAGTCAACTC 59 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 3 2 2 84 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861228 58861247 GAATTTCTTCAGCTCGTGGA 58 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696,ENSRNOT00000002006 3 2 2 80 12 29026480 29026499 CCTCTCATCCAGAATGTCCA 59 29026541 29028105 GAAGGGATCCCACTTCTCTG 60 NA Rattus norvegicus 81 Smyd4 ENSRNOG00000026783 ENSRNOT00000029866 3 1 1 81 10 62221042 62221062 CACTGAGGACATTTCATTGTG 58 62221102 62223782 GTCTTTAAGACATGCTTCATGC 58 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 3 2 2 81 13 52860363 52860381 TGATGTGGAAGCCTACTGC 60 52860422 52863399 GATGACGATAATGACCTTGATGG 60 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 2 2 2 87 19 949940 951688 ATTCTCCACCAGGCTATGAG 59 949872 949890 GTCATCGAGTAGGGTGGTG 60 NA Rattus norvegicus 81 Pcdhb11 ENSRNOG00000020066 ENSRNOT00000027179 3 1 1 60 18 30497442 30497462 GGACAATGGAAGAATGATGTG 57 30497482 30497502 TGTGGGTTTAAGGAGAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med25 ENSRNOG00000020363 ENSRNOT00000027675 2 1 1 80 1 100880845 100881126 CAGAAGATAGGAGAGCGTGG 60 100880784 100880806 CTTCTCAAACAGAAGCCTAAGTG 60 NA Rattus norvegicus 81 Ccdc174 ENSRNOG00000010090 ENSRNOT00000013498 2 1 1 80 4 123781161 123781179 CTTTGCCCGAGACAAAGAG 59 123781220 123783269 ATTCTCTGATCTGTTGTCTGCT 60 NA Rattus norvegicus 81 Anxa7 ENSRNOG00000007136 ENSRNOT00000061686 2 1 1 80 15 4278907 4280874 CTCGGAGTGAGATTGACCT 59 4280916 4280936 TTGCAATCATCGTGCTTAGAG 59 NA Rattus norvegicus 81 Polr2e ENSRNOG00000013545 ENSRNOT00000018169 2 1 1 80 7 12532995 12533937 GACTATCATGCAGCTGTGTC 59 12533978 12533998 GCCTTGAACTCTTCAAGTGTC 60 NA Rattus norvegicus 81 Rnd1 ENSRNOG00000059857 ENSRNOT00000077856 1 1 1 80 7 140355350 140355370 GAATTACACAGCCTGTTTGGA 59 140352682 140355308 TCATAGTACGGAGAGCCTG 58 NA Rattus norvegicus 81 Rnd1 ENSRNOG00000059857 ENSRNOT00000077856 3 1 1 80 7 140351592 140352598 CACTCAAGAAGTGGAGAACAG 59 140351532 140351550 GAAGATCTGTCTTGCAGCC 59 NA Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000029104 2 1 2 80 14 64391595 64475193 ATTCAAAGTCTACTGTGCGTG 59 64391535 64391553 TGGAAGAGACCAAACCGTC 60 NA Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 1 1 1 60 18 15918279 15918298 GTAGAGAACCAGCTCAAGTG 58 15915131 15918256 CATCATCACAGTGCCTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0644.1 ENSRNOG00000022699 ENSRNOT00000036962 1 1 1 60 10 63627790 63627809 ACATCTACCCATAAGGTCGT 58 63627749 63627768 ACTCTGGTGTATCATTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0644.1 ENSRNOG00000022699 ENSRNOT00000036962 2 1 1 60 10 63627790 63627809 ACATCTACCCATAAGGTCGT 58 63627749 63627770 ACTCTGGTGTATCATTGGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0698.7 ENSRNOG00000051109 ENSRNOT00000076821 1 1 1 60 10 70097717 70097741 CTGAGATCGTTAAGTGATTACTTCC 60 70097681 70097700 AGTAACTTCAGCCTCTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 2 2 2 80 17 6766306 6766326 ACCTCAAGAAGAGACTGAAGG 59 6766368 6770643 CTCCAGCATCATGATGCTC 59 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 2 2 2 80 4 56721887 56721905 GAAGACATCCGGGACTCAC 60 56721948 56722064 GAAGGCTTTCACCTTGTCTG 59 NA Rattus norvegicus 81 LOC688424 ENSRNOG00000000252 ENSRNOT00000000269 3 1 1 60 19 3609049 3609068 GGAAAGAAGGTATCCAAGGG 58 3609088 3609109 GATTAACTGCATCCTTACTGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645,ENSRNOT00000001215 1 2 2 80 12 30212306 30212328 TGGTATAAGATGTACCAGAAGCC 60 30212368 30214149 AGGTGGATCCTCATGAAGC 59 NA Rattus norvegicus 81 Nr2f1 ENSRNOG00000014795 ENSRNOT00000020044 3 1 1 86 2 5570959 5576032 GTTCACGTCAGATGCTTGTG 60 5570892 5570910 ACGTATTCCTCCAGTGCAC 60 NA Rattus norvegicus 81 Ddx46 ENSRNOG00000021637 ENSRNOT00000029885 1 1 1 80 17 9480215 9480234 GCTAGAGATTGCCAAGAGGT 60 9478644 9480174 TGCATCACATCTACCTGAGAC 60 NA Rattus norvegicus 81 Rfx6 ENSRNOG00000027949 ENSRNOT00000030642 3 1 1 80 20 32741541 32741560 AACCCTTCTTCCAGAATTCC 58 32741601 32744623 ATGAGAGTGTCAACCTTATCC 57 NA Rattus norvegicus 81 Gapvd1 ENSRNOG00000017925 ENSRNOT00000066961 2 1 1 80 3 13767687 13771803 TCTCAACACTCACAGACGA 58 13767625 13767646 TTCGGTATTTGTCCAGAATGTC 59 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 2 1 1 80 X 11157762 11157782 GGAAATTGGCCTATACCAGGA 60 11156490 11157721 AGACAGGTCTTCCTTCACAG 59 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 3 1 1 80 X 11156493 11157723 CTCTGTGAAGGAAGACCTG 57 11156431 11156449 GTCACCATAATGGTAGCCC 58 NA Rattus norvegicus 81 Ociad1 ENSRNOG00000002205 ENSRNOT00000002996 2 1 1 80 14 37468166 37470439 GGAATACTGTCAAGTCATCCA 58 37467221 37467240 CTTTCCAGCAAAGTATCCCA 58 NA Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000076536 2 1 2 80 10 70370600 70370618 CAAGACAACCACAGAGCTC 59 70375403 70375421 CTTTCCTTGCAGGCAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Kcp ENSRNOG00000021855 ENSRNOT00000050795 3 1 1 80 4 56766343 56766361 AGTAACTGCACAGAGGACC 59 56766060 56766299 TGTCAGATCCTGACACTGG 59 NA Rattus norvegicus 81 Hmgb2l1 ENSRNOG00000033321 ENSRNOT00000046874 2 1 1 60 11 49708746 49708764 AAATGCTCCCAAGAGACCA 59 49708704 49708722 CTTTGGGCGATGTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jun ENSRNOG00000026293 ENSRNOT00000011731 1 1 1 60 5 114012499 114012517 CAACATGCTCAGGGAACAG 59 114012457 114012477 ACTGTTAACGTGGTTCATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Moxd1 ENSRNOG00000015321 ENSRNOT00000061234 1 1 1 80 1 22178195 22178213 ACAAAGGCACGACATACTG 58 22150884 22178151 TTGGCTCCACCTTTATCAC 57 NA Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 2 2 2 80 1 64089297 64089538 GCTAAAGTTGATTGGAGAGTATGG 60 64089240 64089258 TTACGAATCTTCGCCAGGG 60 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 1 2 2 80 20 44882612 44882630 CTCCTGAAATGCTTCCCTG 58 44882671 44890506 GTTTAGTGTTACCTTTGCTCCA 59 NA Rattus norvegicus 81 Olr1091 ENSRNOG00000050907 ENSRNOT00000071081 3 1 1 60 7 15628724 15628745 CTCTACCTTCCCTCATCTTCAG 60 15628765 15628784 GAAGAGGTACATGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc9 ENSRNOG00000006619 ENSRNOT00000009009 1 1 1 82 15 4359536 4359554 AAAGAAGCAGAGCTGAGCA 60 4359599 4359944 TTCTGTCTGCTCTGGATGAG 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 1 1 1 80 9 15326903 15326922 AAATGCTAGCCAAGTTCACC 59 15322282 15326861 TTCGTCGTTTGCTGTTACAC 60 NA Rattus norvegicus 81 Ubc ENSRNOG00000057823 ENSRNOT00000085692 3 1 1 103 12 36638484 36640237 CTGACAATGCAGATCTTTGTG 58 36640302 36640320 TTGTCCTGGATCTTTGCCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911564 ENSRNOG00000048623 ENSRNOT00000072812 3 1 1 80 9 16315882 16315900 GATGCTGAAATACGCACTG 57 16315944 16316518 TTGGCTTCTTCAATGACCC 58 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 2 2 2 80 15 27850643 27850662 CTGCCACACTCAAGATATGC 59 27850705 27851136 CCTTTACCCAATCCAAGCC 59 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 3 2 2 80 16 47912227 47912246 CGACTTGGTTCAAGATGTGG 59 47912287 47914557 CGTAATCGGATCTGTTTGAGG 59 NA Rattus norvegicus 81 LOC100911100 ENSRNOG00000045867 ENSRNOT00000051470 2 1 1 60 5 137584102 137584122 ACTTCCTTCACCATGAGTCTG 60 137584062 137584082 CACAGAAGTAGTGGTCAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppan ENSRNOG00000020608 ENSRNOT00000027973 2 1 1 80 8 21908099 21908118 TAAACACCATCAAGCGTTGC 60 21908161 21908360 CTTTGATGCTGTAGTGCCG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571,ENSRNOT00000012681 1 2 2 80 5 134475651 134476342 CAGTATAATGCTAGACAAATGGGAG 60 134475595 134475616 GTCATCAAGGAGACATAGTGGA 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000083286,ENSRNOT00000041442 1 2 3 64 6 99985704 99986940 CTTCTGGAGCAACAAGTCC 59 99985658 99985676 TAGTTGGTCTGCAGTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910863 ENSRNOG00000046807 ENSRNOT00000072782 1 1 1 60 4 1364413 1364432 GTCTTCAGGTAAGGGTTGGT 59 1364455 1364473 AGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1492 ENSRNOG00000054729 ENSRNOT00000082795 1 1 1 60 10 60428581 60428599 TCCCATCTCCATACACCCA 60 60428539 60428557 AGCAGAGGTCAGAGAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cltb ENSRNOG00000017506 ENSRNOT00000023651 3 1 1 102 17 10549891 10551539 CAACAACAGGATCGCTGAC 59 10554582 10554602 CTCCTCCTTGGATTCTTTCAC 58 NA Rattus norvegicus 81 Dmrta2 ENSRNOG00000008105 ENSRNOT00000067277 2 1 1 120 5 129756605 129756623 TACGAAGTCTTTGGCTCGG 60 129757947 129757965 CAAACTTCTGCAACTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 2 1 1 60 5 120168488 120168507 CTGGCTCAGTTATCACAGTG 58 120168447 120168468 CAGTTATCACAGTACTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss4 ENSRNOG00000026650 ENSRNOT00000040313 1 1 1 80 8 49472827 49472845 TGAAGAGCTCATCCCAACC 59 49472556 49472784 GTGTCAGACATCTTCCCTCC 60 NA Rattus norvegicus 81 Zfp292 ENSRNOG00000031031 ENSRNOT00000035808 1 1 1 80 5 50318894 50318913 GTTAAAGCTCGACCATACCT 57 50318653 50318852 TTCAACACAGCTTAATGCCA 58 NA Rattus norvegicus 81 Dhx58 ENSRNOG00000018247 ENSRNOT00000024718 2 1 1 80 10 88601071 88602478 GACTTCTCGGTCTACTATACCA 58 88601012 88601030 GATTCCTCCAGGTTTCCAG 58 NA Rattus norvegicus 81 Pdcd2l ENSRNOG00000021119 ENSRNOT00000028674 3 1 1 81 1 90053416 90057134 AACGGACAGAATCAGAGTG 57 90053353 90053371 TCTCCTCGGTATCACTTCC 58 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000085222 1 1 2 140 10 104953151 104953169 TCACAGTGACCTTGGAGAG 59 104953273 104978642 TTGAACCTGTGACTGGGAC 60 NA Rattus norvegicus 81 Cep19 ENSRNOG00000024924 ENSRNOT00000037795 1 1 1 80 11 71922834 71933123 TTTCGAAGTTCTCAGATTGCAC 60 71922775 71922794 ACACCTGTTCCAGGTAACTC 59 NA Rattus norvegicus 81 Galt ENSRNOG00000014766 ENSRNOT00000019886 2 1 1 80 5 58146765 58146784 TTTCCAGACATTACTGCTGC 59 58146827 58146946 GAGGCTAGATCATCACGCT 59 NA Rattus norvegicus 81 Olr1413 ENSRNOG00000026801 ENSRNOT00000031811 2 1 1 60 10 43894479 43894499 TCAGGAACAAGGAAGTTACAG 58 43894439 43894458 CTACTGACTCTACACCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp4c ENSRNOG00000010238 ENSRNOT00000013720 2 1 1 97 2 93578087 93578105 AAGACATCACAGAGCAGCA 59 93575745 93578027 CAGAAGCTCATCCTCATCGA 59 NA Rattus norvegicus 81 Cdhr2 ENSRNOG00000017917 ENSRNOT00000024151 3 1 1 80 17 10438333 10438354 CTACATGCCAACTACTTCTCTG 59 10438146 10438293 AGGAAGTGTCTCAAAGTCCA 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079640,ENSRNOT00000091697,ENSRNOT00000079108 1 5 5 80 3 8565039 8565059 CCTCACTAATGTCCAGAACCT 59 8565101 8565438 CCGTCAATTCGATCCTGGT 60 NA Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000082774 1 1 2 80 8 133210537 133213191 GAAACTCTGGCTCTTGCAG 59 133213229 133213253 GTGCTGACATACTATAATCGATGTC 60 NA InUTR Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 3 1 1 60 10 82776068 82776086 AGGACTGTGGCTGATAAGG 59 82776110 82776128 CAGCTTTCTTCAAGGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpp6 ENSRNOG00000030547 ENSRNOT00000045773 2 1 1 80 4 4025344 4025984 AACAGAGCGTATGAGATGAC 58 4025283 4025301 CGTAGCATGGATGATCAGG 58 NA Rattus norvegicus 81 Ns5atp9 ENSRNOG00000016561 ENSRNOT00000022256 1 1 1 64 8 71518979 71518997 GAAGAAGCAGGAAGCAGTG 59 71526142 71526160 TGATCAGGTTGCAAAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Gp9 ENSRNOG00000010015 ENSRNOT00000013282 2 1 1 110 4 119680604 119680622 CTCCTGTCAAGCAACACTG 59 119681461 119681480 GTAGGTATCCAGCAGATGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000047766 2 1 2 82 1 86733177 86733195 AGAAGAACCACTGCTTGCA 60 86733105 86733134 GGATATACTAGCAGGCAGAGTC 60 NA Rattus norvegicus 81 Adi1 ENSRNOG00000008950 ENSRNOT00000011951 1 1 1 80 6 47943013 47943033 CAAGGAACTACTCATGGATGG 58 47943072 47944358 AGAACATCTTGATCTTCTCCTC 57 NA Rattus norvegicus 81 Tssc4 ENSRNOG00000032677 ENSRNOT00000046669 3 1 1 228 1 216254999 216255018 GTTATTGAAGCGTGTACGGA 58 216255457 216255476 CATAAGACCTGACATCCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clip3 ENSRNOG00000020821 ENSRNOT00000028247 1 1 1 80 1 88762779 88763603 AGTGCATCAAGTGACAATGAC 59 88763643 88763663 GAGTTCTCTGATGCAATGTCC 59 NA Rattus norvegicus 81 Edil3 ENSRNOG00000033064 ENSRNOT00000064991 2 1 1 80 2 17982821 17984548 TGAAGAAATGGTCTTCCGTG 58 17984590 17984609 TACTGAGCTTTGATTGGAGG 57 NA Rattus norvegicus 81 Slc35e3 ENSRNOG00000027622 ENSRNOT00000029493 1 1 1 80 7 60770710 60772513 CTGCTTTGCTTATGGTGCT 59 60770648 60770667 ATGTGTTCCCAATGATCCAG 58 NA Rattus norvegicus 81 Olr1029 ENSRNOG00000047357 ENSRNOT00000048223 2 1 1 60 7 7753187 7753208 TCTTAAACCATCAGTCAAGCAG 59 7753148 7753169 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6a ENSRNOG00000000923 ENSRNOT00000001227 2 1 1 80 12 30495240 30495260 TCTGAACTCCTTTGATGACCT 59 30494924 30495202 TTCTCCTCACCCAATGTATACTC 60 NA Rattus norvegicus 81 Zcchc6 ENSRNOG00000016629 ENSRNOT00000022373 3 1 1 80 17 5233845 5234431 AACTACCAGACTGTTCTCTTAGG 59 5234466 5234489 CATCAATGTTCACATCAGAGTCTC 60 NA Rattus norvegicus 81 Rn60_X_0719.1 ENSRNOG00000051060 ENSRNOT00000076595 1 1 1 60 X 71042880 71042898 GATGCCATCTCCAAGACCT 59 71042838 71042857 TGAACACAGTCTCTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000045150 1 1 2 80 18 17496904 17549977 ACAGGAACAGCAGATAACCA 59 17550018 17550038 GCTACACTCAGATAGGAACCA 59 NA Rattus norvegicus 81 Fbp1 ENSRNOG00000017597 ENSRNOT00000023685 1 1 1 80 17 400180 400198 ATGAGGGCTATGCTAAGGA 58 398611 400136 GGAGTGAATTATCCGGAGG 57 NA Rattus norvegicus 81 Zdhhc25 ENSRNOG00000046044 ENSRNOT00000071151 3 1 1 60 7 129595557 129595577 ATGGTATGATCTTCCATCTGC 58 129595599 129595617 AGCATAGTCCGTAGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 2 1 1 80 12 38318402 38319309 AGCCAGGAGTTATTAGTGAGG 59 38319351 38319369 GCATCCGGTAGATGAAAGG 58 NA Rattus norvegicus 81 Rap1b ENSRNOG00000007048 ENSRNOT00000009511 3 1 1 82 7 60855128 60856957 GTTAAAGACACTGACGATGTCC 60 60855067 60855085 TGTTCCTTCCCGACAACTC 60 NA Rattus norvegicus 81 Rnf115 ENSRNOG00000000098 ENSRNOT00000000110 3 1 1 84 2 198888714 198892503 GATTCCAGTTTCTTAGGTGGTG 59 198908367 198908385 GATCCAGATGGTCCCAGAG 59 NA Rattus norvegicus 81 Scrg1 ENSRNOG00000013228 ENSRNOT00000017888 3 1 1 61 16 36130624 36130644 CAATTTCAGCGAATTGCTCTG 59 36127718 36127737 CAAAGGAGATCTTTGGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0702.2 ENSRNOG00000021357 ENSRNOT00000055955 3 1 1 60 10 70472581 70472600 CCCGAGATGGAATAGGACAG 60 70472621 70472641 TGAGGAAGTTTCAGGATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd83 ENSRNOG00000018092 ENSRNOT00000024458 3 1 1 93 17 24433072 24433090 CCTTCAGGAAGTACAGGGC 60 24433145 24434249 AGTCGTGCAAACTTACATGTG 60 NA Rattus norvegicus 81 Foxo4 ENSRNOG00000033316 ENSRNOT00000048521 3 1 1 84 X 71156271 71156291 GATATACGAATGGATGGTCCG 58 71156336 71159323 GATGGAGTTCTTCCATCCTG 58 NA Rattus norvegicus 81 LOC100909620 ENSRNOG00000049821 ENSRNOT00000075282 3 1 1 80 1 81556176 81556195 GTCCAACCTTGTTCTATGCC 59 81555836 81556134 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Cntf ENSRNOG00000012460 ENSRNOT00000016690 2 1 1 76 1 229600849 229600867 ACCTGACTGCTCTTATGGA 58 229599861 229599879 ACCATCCACTGAGTCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Pwp2 ENSRNOG00000001210 ENSRNOT00000001605 3 1 1 80 20 11228959 11229798 TTCGCTTATCGGTTCTCCA 59 11229839 11229860 AACAGAATTTCCATCACGTGAG 59 NA Rattus norvegicus 81 Hyou1 ENSRNOG00000010944 ENSRNOT00000044613 2 1 1 80 8 48705710 48705987 GATCTTCGGGTATTTGGCTC 59 48706025 48706048 GTCAGGATATTTCTTGAAGCTCTC 59 NA Rattus norvegicus 81 LOC103689982 ENSRNOG00000052600 ENSRNOT00000090873 2 1 1 80 1 64041346 64045107 TCCTACGTATTGAGGAGTGC 59 64045148 64045168 GAAGCTTAGGTAGTAGCCAGG 60 NA Rattus norvegicus 81 Hes2 ENSRNOG00000010490 ENSRNOT00000014035 3 1 1 81 5 169338707 169338726 ACATCCTGGAAATGACTGTG 58 169338770 169338868 CTATCCAAAGACCCAGGTG 57 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 2 1 1 150 13 60436532 60441102 GAAAGAAAGAATGACGTCGAGG 60 60441213 60441231 CTTCTCCTCCACTGAAGCA 59 NA InUTR Rattus norvegicus 81 Mir3582 ENSRNOG00000035651 ENSRNOT00000053774 1 1 1 60 18 2052505 2052525 GGGACCAAATCCATTGAAGAG 59 2052546 2052565 GCAATGCTTTGCTAAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebf4 ENSRNOG00000007408 ENSRNOT00000028816 3 1 1 80 3 122881155 122881174 AGTAGAAGTGACCCTCTCCT 59 122881216 122882622 TCATTCAGGGCTGTGTAGAC 60 NA Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 2 1 1 80 2 251990990 251991008 AAGCTCAAAGCCATCAACC 59 251991046 251994644 GAATGTTATAGTCAGGGTAAAGTCG 60 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 3 1 1 84 7 13108652 13108671 CTTTGCTGAATCCTTCCCAG 59 13108381 13108610 CATTTGTAGCCTATAGCAATGAGG 60 NA Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 3 1 1 80 X 71202740 71202758 CGCCACTTATATCCAGGAG 57 71202800 71203454 GAAATCCGCTTTACATCTTCC 58 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 1 1 1 60 11 43687492 43687511 AGTACCACACCATGATGTCC 60 43687533 43687552 GCTATGAATATGCCCATGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 1 2 2 81 7 14255952 14255973 CAAGACACTATGGAAACACCAG 59 14252619 14255913 ATAGTAATCAGGGAGGTTCAGC 60 NA Rattus norvegicus 81 C3ar1 ENSRNOG00000009211 ENSRNOT00000012216 3 1 1 80 4 155685929 155690765 TCAGTGCTCTTGACTGAGC 60 155685867 155685886 GTTTAAACAGAGGCCGTGAG 59 NA InUTR Rattus norvegicus 81 Fcgbpl1 ENSRNOG00000042899 ENSRNOT00000057120 2 1 1 80 1 85075564 85075583 GACCAAGATGATCACCATCG 59 85075626 85077957 ACAGCGTTCACCTTAACCT 59 NA Rattus norvegicus 81 Irf2bpl ENSRNOG00000011026 ENSRNOT00000014645 1 1 1 60 6 110902988 110903007 TACCAGGATTGCATGAAGGA 59 110902947 110902966 ACTCCAGGTATTTGAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 3 2 2 80 11 87693880 87693902 TATACACTTCTGAGCTAGAGCTG 59 87693940 87698488 TTTCTGGTATCTGAAGTTGGC 58 NA Rattus norvegicus 81 Rn60_1_0437.1 ENSRNOG00000055098 ENSRNOT00000088838 1 1 1 60 1 43662213 43662232 AGCATCTTCCTCATTCTCAG 57 43662255 43662273 GACACCACCTGTTAAACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 3 1 3 65 1 198899329 198899347 CTAGATCCGCAGGAGTACC 59 198895810 198895828 ATTCTTCTGCCTGGTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 1 2 2 80 14 3251054 3251435 GATTCATCAGAGATCCCTGG 57 3250993 3251012 GTGCACATAAGATCAACAGC 58 NA Rattus norvegicus 81 Vwa1 ENSRNOG00000018338 ENSRNOT00000024897 3 1 1 80 5 173220150 173220169 AGAAGCACCTACACTTTGTG 58 173218466 173220107 GCATCGCATCAATAATGGC 58 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596,ENSRNOT00000005479 3 3 3 80 10 11068131 11071197 TTGTCACATTCAGGGTGCA 60 11068069 11068093 CTATTGAAATAAAGAGGTCGGAGTG 60 NA Rattus norvegicus 81 Ppp1r3a ENSRNOG00000059350 ENSRNOT00000085596 2 1 1 80 4 41180012 41180128 AAGTTCACAGAGTCCTACATCC 60 41179953 41179974 TACATGTTGATAATTGGCTCCC 59 NA Rattus norvegicus 81 Pcnxl2 ENSRNOG00000028580 ENSRNOT00000030077 2 1 1 80 19 58657702 58667998 GGATGAAGGATTCAGTGAAGG 59 58657642 58657660 TGACTGCAAAGGAGAGGAC 59 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 3 2 2 80 5 63097217 63097235 GCCCTTTCATTTCAGAGGG 59 63097278 63099993 GTGGTAAACCTGATCCAGAC 58 NA Rattus norvegicus 81 Rpl8 ENSRNOG00000048456 ENSRNOT00000075451 3 1 1 80 7 118508939 118509106 TGCCATGAATCCTGTGGAG 60 118509149 118509168 GCATCTCTTCGGATAGTGGA 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401,ENSRNOT00000090831 1 2 2 80 12 37518090 37518110 TGAGAGGAATGAGCTTAAGTC 57 37518150 37519658 TCCTCTTCTATTTCTTCGCTC 57 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 1 2 2 80 13 67143104 67165134 CGATATGCTGGACACTCCT 59 67143042 67143060 AAGTGTCTTGTTCGCTTCC 58 NA Rattus norvegicus 81 Prr5 ENSRNOG00000012475 ENSRNOT00000016679 1 1 1 80 7 125607057 125607075 TAGTGTCACCATACCTGGG 58 125607118 125608385 ACCGTTTCTCAAGGATACAG 57 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539,ENSRNOT00000085475 3 2 2 85 11 88173968 88176586 GGTGGAAATATGAACATGCC 57 88173902 88173920 ATCTTTGATCATGTGGGCA 57 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000090791,ENSRNOT00000080590,ENSRNOT00000060327 2 4 7 74 20 4087728 4087746 TGTTGCTAACAGTGCTGAG 58 4091614 4091632 GTATCTGACCAGAAGCCGT 59 NA DesignNoJunction Rattus norvegicus 81 Adgrg3 ENSRNOG00000014896 ENSRNOT00000020062 3 1 1 80 19 10417363 10417382 GCTCAGTGTTTCACCAAGTG 60 10403784 10417323 ATAGTTCAGCCAGTATCTCTGC 60 NA Rattus norvegicus 81 RGD1310166 ENSRNOG00000003143 ENSRNOT00000004193 3 1 1 83 10 72486284 72488132 TAAGCCACTAGAGAAGGTGG 59 72488178 72488196 TGACGGACCAGAACATCTC 59 NA Rattus norvegicus 81 RGD1559489 ENSRNOG00000038174 ENSRNOT00000031284 1 1 1 98 7 65720075 65720093 ATTACATCTCCAGAGGCCG 59 65720155 65720235 GCTGATGATTCTGGTGCAG 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000050393 ENSRNOT00000051137 1 1 1 60 7 36290251 36290271 TTCAGAATCAAGCGATTCCTG 59 36290292 36290311 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfbi ENSRNOG00000012216 ENSRNOT00000016390 2 1 1 80 17 8407529 8407547 TTGTACTCCGGACAGACAC 59 8406840 8407487 TTCAATGCAGAGGCTATTTCG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 9 18 60 1 43508712 43508731 CAGAACACTAGGGAACATCC 58 43508753 43527500 CTAGCTGGTGGTTAGTTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000085873 3 1 18 113 1 43508754 43510392 CGAACTAACCACCAGAGCA 60 43510467 43510487 AAGCTTTCCTATGCTCTTCCT 59 NA Rattus norvegicus 81 Polh ENSRNOG00000019195 ENSRNOT00000026049 3 1 1 80 9 17166722 17167366 AGGTGGTGGAATTATTGCAG 58 17167408 17167427 TTCTTAGCATCATCAGCCCA 59 NA Rattus norvegicus 81 Mad2l1bp ENSRNOG00000019463 ENSRNOT00000026331 2 1 1 89 9 17217128 17217146 TACTAAGCTGGCAGTCACG 60 17217197 17217597 TCAGTCCAATCCAAATTTGGG 59 NA InUTR Rattus norvegicus 81 Tgfbr2 ENSRNOG00000013265 ENSRNOT00000037883 3 1 1 80 8 124327924 124327943 GGATGTCTACTCCATGGCTC 60 124315569 124327885 GGCTCATAATCTTTCACTTCTCC 59 NA Rattus norvegicus 81 Runx3 ENSRNOG00000054217 ENSRNOT00000086650 1 1 1 60 5 153526878 153530612 AATCCAAGGCTCCTCAGAC 59 153530636 153530654 GAAGGAGCGATCAAACTGG 59 NA DesignRelaxed Rattus norvegicus 81 Krtap24-1 ENSRNOG00000048374 ENSRNOT00000071034 3 1 1 60 11 28583316 28583336 CTACCAACATCAGATGCAGAC 59 28583276 28583295 GATACATACCCTTTGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdo1 ENSRNOG00000000158 ENSRNOT00000000172 2 1 1 80 18 40712101 40712120 TTGTGGATCAAGGAAATGGG 58 40709486 40712059 TGTGATCGTGAATACTGCTG 58 NA Rattus norvegicus 81 LOC100363384 ENSRNOG00000001566 ENSRNOT00000002131 2 1 1 60 11 28870118 28870136 ACTACTATGGTGGCCTTGG 59 28870076 28870094 CCATAGCCATAGCCCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pyy ENSRNOG00000020877 ENSRNOT00000028323 2 1 1 164 10 90048645 90049057 GAGCTGTAGCTGCTATGGT 59 90048499 90048517 AAGCATAGTAGCGGCTCAG 60 NA InUTR Rattus norvegicus 81 1190003K10Rik ENSRNOG00000050209 ENSRNOT00000072220 1 1 1 80 17 1994258 1999464 GCTCTGAGAAAGCTCAGAG 58 1994196 1994217 TTCCTTGTCATCAGGATTATCC 58 NA Rattus norvegicus 81 Anapc10 ENSRNOG00000018296 ENSRNOT00000024689 1 1 1 80 19 31816750 31853235 TTCAAGAAATCCGGCAACTC 59 31816689 31816709 TTGGCTTCTTATGGTTGTCAG 59 NA Rattus norvegicus 81 Anapc10 ENSRNOG00000018296 ENSRNOT00000024689 3 1 1 81 19 31862113 31866345 CAAACCAGGGTTTGGAGTG 59 31862050 31862068 TAAATGAGGCTGAGAGCCA 58 NA Rattus norvegicus 81 Tbca ENSRNOG00000016100 ENSRNOT00000021543 2 1 1 60 7 144503771 144503789 AAGGACTTGGAAGAAGCTG 57 144503813 144503831 ACTTCACAGAATCCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsa ENSRNOG00000012953 ENSRNOT00000017783 1 1 1 86 7 130450115 130450243 TATTCCCATGACCAGGGTC 59 130450047 130450065 AACTAGGCCTTGGTCACAG 59 NA Rattus norvegicus 81 Slc44a4 ENSRNOG00000000878 ENSRNOT00000001174 3 1 1 80 20 4606980 4607093 CACAAGCTAAGAGGATCCCA 59 4607135 4607154 CTTCTCCAGACACCAGAGAC 60 NA Rattus norvegicus 81 LOC100911171 ENSRNOG00000025516 ENSRNOT00000042522 2 1 1 80 7 106650202 106653414 CACTTCACAGAAGCTGCTC 59 106650140 106650158 TACTGACCATGAGCAGCAC 60 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 1 2 2 80 18 28654630 28654651 GCCATCAGATTTGCAAATTCAG 59 28654692 28655901 ACGGAAGCATCACCTTCTC 60 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808 1 1 2 60 6 142418779 142418798 GGTAGAGCTTGTTGAGTCTG 58 142418738 142418756 CGAGAGTTTCAATGACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc38a6 ENSRNOG00000022622 ENSRNOT00000029328 3 1 1 80 6 96194125 96194143 TTCGCCTTTGGATTACCTG 58 96198195 96209283 AAGGTAAGATGACATAGCTCCA 59 NA Rattus norvegicus 81 Taz ENSRNOG00000053023 ENSRNOT00000089778 3 1 1 81 X 156423114 156427334 TATGTCGAGGAGATGGTGTC 59 156423052 156423070 AAGATGTGTACCCAGTCCC 59 NA Rattus norvegicus 81 Rpl27a ENSRNOG00000014214 ENSRNOT00000019247 3 1 1 102 1 174134114 174134132 ATTATGGACGTTGGTCAGC 58 174134196 174135120 AACTTTGTAGTAGCCTGATCG 58 NA Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 3 1 1 94 13 55870439 55870457 TGCTGTGAATGTAAGCTGG 58 55869176 55870385 GAGAACCTTCTGTAGTAATCCTC 58 NA Rattus norvegicus 81 Mars2 ENSRNOG00000050002 ENSRNOT00000075508 2 1 1 60 9 64436219 64436239 ACTACGCACTTGTAAATGCAG 59 64436259 64436279 TCGTTATAATAGCCCGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsr ENSRNOG00000017888 ENSRNOT00000024115 3 1 1 80 17 3886910 3886929 TTTGATCCCAGTTTGGATGC 59 3886969 3887259 ATGTCCTTCTTCCTCCATAGTG 59 NA Rattus norvegicus 81 RGD1309104 ENSRNOG00000028236 ENSRNOT00000059807 3 1 1 89 13 69384911 69384929 GCCAAGCATGTTGCTACTG 60 69355961 69384860 CCTATACTCATCGCCAAACAC 59 NA Rattus norvegicus 81 Sostdc1 ENSRNOG00000005770 ENSRNOT00000008106 3 1 1 81 6 55813025 55813044 AACAGCACCTTGAATCAAGC 60 55813085 55815663 CCACTTGAACTCGACTATTTCG 60 NA Rattus norvegicus 81 Ccdc146 ENSRNOG00000012932 ENSRNOT00000017374 2 1 1 80 4 10372995 10374007 GCTGAAAGAGGGATCTTGG 58 10374048 10374069 CTTACGAGAAAGTTCATCATGG 57 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 1 1 1 60 11 71757641 71757661 GAAACCACAACCCTGATATCC 59 71756192 71757621 CTTGGAGCTTGTTGTCTACTC 59 NA DesignNoJunction Rattus norvegicus 81 Tesb ENSRNOG00000039398 ENSRNOT00000079194 1 1 1 80 20 4206254 4206274 CAACTGGTGTTTCTGTAGGAG 59 4207431 4209310 CTTGGAATAGAGCAGGATTGG 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 3 2 2 81 2 250733892 250736670 CAGCCAAATCCAAATGCCA 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Prdm14 ENSRNOG00000021792 ENSRNOT00000034525 2 1 1 82 5 5715491 5718129 CCCTACCTGTGTTCAACGT 60 5718175 5718193 CTGTCTCCAGAGTGGACTC 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 3 1 1 60 10 14053557 14053575 TACTGGATCTGGGCTTCTC 58 14052975 14052993 AGGAAACAGAAGCCTACGA 58 NA DesignNoJunction Rattus norvegicus 81 Hsf1 ENSRNOG00000021732 ENSRNOT00000050108 2 1 1 81 7 117560377 117560768 GCTCAACATGTATGGCTTCC 59 117560812 117560830 GAACTCGGTGTCATCCCTC 60 NA Rattus norvegicus 81 Mrps18a ENSRNOG00000019511 ENSRNOT00000026499 1 1 1 80 9 17241466 17241485 TCTGTTCCCAAATCACAGAC 58 17238717 17241424 CGAGTCAGATAGCGATTGAG 58 NA Rattus norvegicus 81 Mir455 ENSRNOG00000036266 ENSRNOT00000054389 3 1 1 60 5 79097224 79097242 CCTTTGGACTACATCGTGG 58 79097265 79097284 TTGAGGCAAGTGTATATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppap2c ENSRNOG00000000177 ENSRNOT00000000193 2 1 1 81 7 13065269 13065403 CTACTGTCGTCCTTGTCTC 57 13065447 13065466 TAGTTGTTGAAGTCAGAGCG 58 NA Rattus norvegicus 81 Rax ENSRNOG00000016944 ENSRNOT00000022784 1 1 1 73 18 61641265 61641283 TTAACCTACCCGAGGTTCG 59 61638787 61638805 TAGTTTCTCCTGGCGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Cct7 ENSRNOG00000015630 ENSRNOT00000021030 1 1 1 80 4 117250846 117250865 GAGCAGTTTATGGAGGAGAC 58 117250907 117251330 CACAGAGTCGTTCTTGATGG 59 NA Rattus norvegicus 81 LOC690422 ENSRNOG00000005153 ENSRNOT00000029223 3 1 1 80 6 137967705 137969608 CTGACAGGTTATTGGCTCCA 60 137969651 137969669 CGGTCCAGGTATTGTTTGC 59 NA Rattus norvegicus 81 Slc35b4 ENSRNOG00000008851 ENSRNOT00000012179 3 1 1 80 4 61556968 61558172 CATGGTGGTTACTAGGTATTGG 58 61556909 61556929 ACAGAGTCTCTTGGAATATGC 58 NA Rattus norvegicus 81 Cux2 ENSRNOG00000001259 ENSRNOT00000001697 3 1 1 83 12 40201977 40201995 GAGCTGGAAGAGGTCTCAG 59 40202040 40202139 TTGGAGTTTCTCTATGGCCTC 60 NA Rattus norvegicus 81 Slc23a2 ENSRNOG00000021262 ENSRNOT00000028885 1 1 1 80 3 124657378 124668374 ATTTGGATGCAGGTTACCC 58 124657316 124657337 TTATCTAAAGACAGGATGGCTC 58 NA Rattus norvegicus 81 Slc23a2 ENSRNOG00000021262 ENSRNOT00000028885 2 1 1 80 3 124657378 124668375 CATTTGGATGCAGGTTACCC 59 124657317 124657338 TATCTAAAGACAGGATGGCTCG 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331,ENSRNOT00000088724,ENSRNOT00000088649,ENSRNOT00000090174 3 4 4 80 13 70247251 70249688 AGATCTTCAGGGCTCTGGA 60 70249732 70249750 TGACCTGTAGTTCTTCCGG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845,ENSRNOT00000006144 3 2 2 80 6 144110352 144111594 AAGGGAGTCAAAGGAACCTG 60 144110291 144110313 TCTTCTAAGTTGGGCAGATACTC 60 NA Rattus norvegicus 81 U8 ENSRNOG00000056054 ENSRNOT00000083120 2 1 1 60 10 55656479 55656498 TCTGCTGATTAGCATTTCCG 59 55656520 55656539 TCAGATAGGAGCAATCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx18 ENSRNOG00000006139 ENSRNOT00000008410 3 1 1 80 14 77428719 77440806 TACATTAATGCCTACAGCCAC 58 77428659 77428677 AGCATCCTGGTCTATCTGG 58 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 1 1 1 60 20 5078521 5078543 AGCTACTTGGTAAAGGACTTAGG 60 5078561 5078581 GTATCAACTACTTGGGCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsbp1l1 ENSRNOG00000059055 ENSRNOT00000078797 3 1 1 60 18 76750701 76752493 CCTCAGAATGGAAGAAATGGG 59 76750661 76750681 TAGGTCATCCACATTTCTCTG 57 NA DesignRelaxed Rattus norvegicus 81 Aaas ENSRNOG00000013445 ENSRNOT00000018809 1 1 1 80 7 143938602 143938623 CGATTGTTGTTCACTGTATTGG 58 143938416 143938562 ATGTCCTTTCTCTGTTCCAC 58 NA Rattus norvegicus 81 RT1-A2 ENSRNOG00000030712 ENSRNOT00000038660 1 1 1 80 20 5377256 5377368 CAGAGATGGGAGCCTTCTC 59 5377412 5377430 TCCAATGATGGCTCCAAGG 60 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 1 1 1 80 11 61512199 61513917 CAACATCTATCTGCATGTCCA 58 61512139 61512159 GTCTCGATAATCTCAAAGCCA 58 NA Rattus norvegicus 81 Trim67 ENSRNOG00000019024 ENSRNOT00000032359 3 1 1 81 19 57580373 57581656 AAGCTGAAGATGGTTTGGGA 60 57581700 57581718 CCAGGCAGTACTCCATCAG 60 NA Rattus norvegicus 81 RGD1563861 ENSRNOG00000056765 ENSRNOT00000083951 1 1 1 80 X 156439211 156439397 CTCTTCTGAAGCACTGGAG 58 156439149 156439168 ATATGAAAGCCATCCTTGCC 58 NA Rattus norvegicus 81 LOC364561 ENSRNOG00000020474 ENSRNOT00000027818 3 1 1 87 8 21679187 21679206 TTGAATCTCTGGCCTCACAG 60 21679256 21680097 TTCTGCATCTGACCTCTGC 60 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 3 2 2 80 4 168275984 168296987 TCAAGTGGGTTCATGTACTG 58 168275923 168275941 AAAGCGACTTGAACCATCC 59 NA Rattus norvegicus 81 Rn60_1_1144.1 ENSRNOG00000028324 ENSRNOT00000030707 1 1 1 60 1 113346877 113346897 CGAACATTGGGACTGATATGG 59 113346837 113346856 ACTATGGCGTCCTTCTTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apobec4 ENSRNOG00000028089 ENSRNOT00000036906 3 1 1 80 13 70157674 70164334 GAGACAAAGCTGATCTGCA 58 70164376 70164396 TCCACTGTGGGTTAGATACTC 59 NA InUTR Rattus norvegicus 81 AABR07042384.1 ENSRNOG00000056271 ENSRNOT00000089929 3 1 1 97 X 154548299 154548470 AGGTCAAGGTAACTAAGAAACC 58 154548527 154548546 CTTAACCAAGGGTGTCTGAG 58 NA Rattus norvegicus 81 Tmem41a ENSRNOG00000046283 ENSRNOT00000074826 1 1 1 80 11 82738458 82738477 ACTGGTTCTTGAACCTCTCG 60 82738518 82740400 GGATCAAACCGATAAGCACTG 60 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 3 2 2 80 16 8215857 8215875 CCATCAGTGAAGAGCCTCC 60 8215916 8217078 GATGAAGAAATCAACCCACTGG 60 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 2 1 1 60 8 41253299 41253318 ACATTCTTGGTTTCCATGCT 58 41253340 41253359 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360635 ENSRNOG00000016507 ENSRNOT00000022367 2 1 1 118 4 118172504 118172523 TGTACAAGGAATACTGCGGG 60 118172604 118174692 TGTTTCCTCGGATGACCAC 60 NA Rattus norvegicus 81 Mt1 ENSRNOG00000025764 ENSRNOT00000038212 2 1 1 80 19 11302282 11302300 CAAGAAGCAGGTCTTCTGC 59 11302219 11302243 GGAAAGAAAGAAGAGGAAGATGTC 60 NA Rattus norvegicus 81 LOC297756 ENSRNOG00000007238 ENSRNOT00000009490 2 1 1 82 5 2799687 2803301 GCAGATGGCTACTGTTGTG 59 2799623 2799641 GACATGAGGTTGACCTCCA 59 NA Rattus norvegicus 81 Rn60_8_0909.1 ENSRNOG00000042208 ENSRNOT00000064498 3 1 1 60 8 91296656 91296675 GTTTGTTAGCAGATGCTCGT 59 91296615 91296636 CTAAAGTTGGACGCTTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpst ENSRNOG00000000185 ENSRNOT00000000201 1 1 1 122 7 119627168 119627186 TCCTGGAGAACTTGGATGC 59 119630844 119630862 TTACTGAGCCAGGGATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pon3 ENSRNOG00000009096 ENSRNOT00000012050 3 1 1 80 4 30325518 30325536 CTGGAAATCAGTGATGGGT 57 30321422 30325474 CACAGTGTTGTCTTTGTCG 57 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 2 2 2 80 8 85503241 85503260 GCTCTACTACTTTCAAGGCA 57 85503302 85504614 TCTTCTTCAAACTCCACTCC 57 NA Rattus norvegicus 81 Rhoh ENSRNOG00000002540 ENSRNOT00000003425 1 1 1 80 14 43992390 43992408 AGCTACTTAGACTTCCGGA 57 43963417 43992346 TCAGTCACTTTGGGAACTG 57 NA InUTR Rattus norvegicus 81 AABR07034532.1 ENSRNOG00000001713 ENSRNOT00000002330 2 1 1 60 11 74865425 74865443 GATGACAACGACCTGTGGA 60 74865383 74865405 AATTCGGCTCCTTACCTATACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcm4 ENSRNOG00000001833 ENSRNOT00000002510 3 1 1 80 11 89514170 89514191 AACATCAGATTCAAGTCAGACC 59 89514231 89516384 GCTGATCAATGTCTTCTGGA 58 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852,ENSRNOT00000017740 1 2 2 80 5 150740317 150741337 AAAGAAATGCATGAGAGGAAGC 60 150741378 150741396 CTGCCATTCTCTTTCTCGC 59 NA Rattus norvegicus 81 LOC100365839 ENSRNOG00000048109 ENSRNOT00000074617 3 1 1 60 11 79548109 79548127 GACCGATGGGTATTTGCTC 58 79548148 79548169 CTGGTTGTTACGTTTCTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359825 ENSRNOG00000033058 ENSRNOT00000043587 1 1 1 60 6 95826643 95826663 TTTATGCCCGAGATGAAACTG 59 95826683 95826703 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Papd4 ENSRNOG00000012099 ENSRNOT00000016135 3 1 1 80 2 22778609 22781088 CACTTCTGTACTAGACTTTCTGG 58 22778551 22778571 ATCCCTGAACTTCACAATTGG 59 NA Rattus norvegicus 81 Tmed2 ENSRNOG00000001053 ENSRNOT00000001397 3 1 1 80 12 37472677 37474851 GAATACACAGAGCCATCAATGAC 60 37472619 37472637 TGGCAACAAGAACAAGAGC 59 NA Rattus norvegicus 81 Coch ENSRNOG00000005286 ENSRNOT00000007365 1 1 1 80 6 72364668 72364766 TGGCAATAAAGACTGCAAGG 59 72364809 72364827 TGCAAATTAAATCGGCGCT 59 NA Rattus norvegicus 81 Recql4 ENSRNOG00000032446 ENSRNOT00000045135 2 1 1 80 7 117768773 117768791 ATTGATGAGGTCCACTGCC 60 117768632 117768733 CTCCCGAAGTACTTTACAAACAC 60 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 2 2 2 94 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914330 143914350 CCACAACTTCCATTAGTTCCT 58 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 2 1 1 80 X 156414533 156414554 GCTTTCTACCTACTTAGACCCT 59 156412471 156414493 TCAATGCTTAGCTTGTCCTG 58 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575,ENSRNOT00000027590 3 2 2 80 1 167286529 167286548 TAGCACTAACATCAGCACCA 59 167285861 167286488 AAACGAAGCTCCTCTAATGAC 58 NA Rattus norvegicus 81 Stoml2 ENSRNOG00000009535 ENSRNOT00000013151 3 1 1 80 5 58474891 58475000 TCCTTACAAGGCAAGTTATGGT 60 58474832 58474852 AGCTCTGATCTCATAGTCGTC 59 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491,ENSRNOT00000056724 2 2 2 80 9 97251723 97251746 AGAATACCCTAATGAGGAAGAAGG 60 97245668 97251687 ATGATATCCTCGATAACCTGCT 59 NA Rattus norvegicus 81 Rdh10 ENSRNOG00000006681 ENSRNOT00000009096 2 1 1 80 5 2605404 2605509 GACATTCATGAAGAGCATCCT 58 2605344 2605363 GGGTACATACACTTGTCTGC 58 NA Rattus norvegicus 81 Myl9 ENSRNOG00000020246 ENSRNOT00000027445 2 1 1 109 3 152862797 152862818 CCATGTTCCTCACTATGTTTGG 59 152862888 152863330 CTCGTGGATGAACCCTGAG 60 NA Rattus norvegicus 81 Myl9 ENSRNOG00000020246 ENSRNOT00000027445 3 1 1 117 3 152862789 152862809 CAACTTCACCATGTTCCTCAC 60 152862888 152863330 CTCGTGGATGAACCCTGAG 60 NA Rattus norvegicus 81 Tex38 ENSRNOG00000010162 ENSRNOT00000013480 1 1 1 81 5 134637528 134637927 TCTCTGGCATGTGGATCTC 59 134637465 134637484 TGCAGAAAGATTATGCAGCT 58 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271,ENSRNOT00000005861 2 2 2 80 6 86748172 86755690 CATCTGAGAATGAACCATCTCC 59 86755728 86755749 TTATCTCTGGACTGTGAGTGAC 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271,ENSRNOT00000005861 3 2 2 80 6 86748173 86755690 ATCTGAGAATGAACCATCTCC 57 86755730 86755750 ATTATCTCTGGACTGTGAGTG 57 NA Rattus norvegicus 81 Os9 ENSRNOG00000025570 ENSRNOT00000049895 1 1 1 80 7 70382761 70382904 TCCAGGAGACAGAGAAGGA 59 70382699 70382718 ATGTCAGAGCCAATATTGCC 58 NA Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 3 1 1 68 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095098 18095119 GGGAAACAGTAATTGAAGAGCT 59 NA DesignNoJunction Rattus norvegicus 81 E2f5 ENSRNOG00000010760 ENSRNOT00000044847 3 1 1 80 2 88353379 88353399 AGCATGTTTCTGAAAGAAGCC 60 88351947 88353342 TGATGTCTCCACTAATAGATCCTG 59 NA Rattus norvegicus 81 Zfp2 ENSRNOG00000030750 ENSRNOT00000040346 1 1 1 80 10 36402536 36402555 TGAATTCTCTAGGAAGGCCC 59 36400463 36402493 CAGTGATTCCTGAGCTCCC 60 NA InUTR Rattus norvegicus 81 Npsr1 ENSRNOG00000015863 ENSRNOT00000021625 3 1 1 80 8 25419359 25448414 CTACTTACAGGTTGTCCTGC 58 25448455 25448475 TAAACGATGGCATGGTATCTG 58 NA Rattus norvegicus 81 Zfp146 ENSRNOG00000006796 ENSRNOT00000008889 1 1 1 60 10 74769438 74769458 TAAGCATCAGAACACTCACAC 58 74769398 74769419 GGATTTCCCACAATCATTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1344 ENSRNOG00000033704 ENSRNOT00000046464 2 1 1 60 9 99667545 99667563 CTAGCCATCATCCTCACTG 57 99667503 99667522 GGAAGTAGTACATGGGTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setd8 ENSRNOG00000001062 ENSRNOT00000066253 3 1 1 82 12 37569821 37569839 ATTCTACCAGTGTAGCGGT 58 37569393 37569775 CCCTTGAGACTTCTTCCGA 59 NA Rattus norvegicus 81 Lnpep ENSRNOG00000047387 ENSRNOT00000017718 3 1 1 80 1 59329386 59330936 AGAGCTCAACAGTTATGAAGAC 58 59329327 59329348 ATTGGATGAGACGAATTCAAGG 59 NA Rattus norvegicus 81 Hmgxb4 ENSRNOG00000013878 ENSRNOT00000067519 2 1 1 80 19 14382398 14382416 AGAACAAAGCTGAAGCCAC 59 14382460 14383117 CCACAGAAGAAGCTCTGAC 58 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 2 2 2 80 5 153261794 153262436 GCCTGAGTGAGAAAGATCG 58 153262478 153262498 CAAAGTTGGCTGTTCCTAGAG 59 NA Rattus norvegicus 81 Zfp329 ENSRNOG00000019376 ENSRNOT00000026204 1 1 1 87 1 65781554 65791837 CAACCTGTATATGGAACATGAGAC 59 65791880 65791901 CCTTCCATTTCTACCTCAAAGG 59 NA InUTR Rattus norvegicus 81 Rps19bp1 ENSRNOG00000017847 ENSRNOT00000024085 1 1 1 60 7 121488790 121488809 GTGAAACTACGGAACTCAGC 59 121488749 121488767 TTCCCAGCTCACCTAATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr1 ENSRNOG00000028498 ENSRNOT00000024012 2 1 1 80 14 77004397 77004417 GAAGATCAAGGACATAGCCTG 58 77004459 77005515 ACAGCTCCAAATTTCTCCC 58 NA Rattus norvegicus 81 Lrrfip2 ENSRNOG00000021047 ENSRNOT00000056060 2 1 1 80 8 119481007 119482107 TTGGAACAAAGTATCAGCCG 59 119482149 119482168 GTCTTCAATCTTCTCAGCGT 58 NA Rattus norvegicus 81 Trim63 ENSRNOG00000016543 ENSRNOT00000067524 3 1 1 80 5 152538448 152539356 CTTCCAAGGACAGAAGACTG 58 152539397 152539417 GAGATGATAGTCTGAACTCGG 58 NA Rattus norvegicus 81 Cpa6 ENSRNOG00000005655 ENSRNOT00000007491 2 1 1 80 5 8467513 8469679 TCTTGATTATACAGCTGGGCA 59 8469720 8469739 ATTCTCTTGCATGAATGCCG 59 NA Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 3 1 1 80 4 38664842 38664864 TGTCTCCATGATTTATCTAGCG 58 38664094 38664113 AAGGTTAAAGGTTTGAGGCG 59 NA Rattus norvegicus 81 Vgll3 ENSRNOG00000028774 ENSRNOT00000042316 2 1 1 100 11 3142743 3142761 ATCTGACTACAGCCACCAC 59 3142825 3164520 ATGCTGAAGACCTGTTTCG 58 NA Rattus norvegicus 81 Ctc1 ENSRNOG00000005357 ENSRNOT00000007447 3 1 1 80 10 55603321 55603342 AGATTTGGAACAAGAGTCTAGG 58 55603380 55603498 AGATCTATAAGCTCACAGTCCA 58 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 2 2 2 80 9 10998333 10998354 AATATCCATTTGCATCCAGAGG 59 10998395 10999108 GCAGTTGATTCGTTCCTGG 59 NA Rattus norvegicus 81 AABR07065645.2 ENSRNOG00000047785 ENSRNOT00000070980 2 1 1 119 6 138565061 138565079 CTCTCAAATCCCGACTGAG 57 138564866 138564978 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 Gpi ENSRNOG00000023150 ENSRNOT00000032613 3 1 1 80 1 90066882 90066903 AAGATGATACCCTGTGATTTCC 58 90065511 90066841 CAGGAGGATCTTGTGATGC 58 NA Rattus norvegicus 81 Helb ENSRNOG00000004189 ENSRNOT00000038147 2 1 1 80 7 64885553 64887182 AATGCGAGTGTCTATTCCTG 58 64885492 64885510 CACCACGGATCTTTGAGTG 59 NA Rattus norvegicus 81 Pum1 ENSRNOG00000011709 ENSRNOT00000015831 2 1 1 80 5 148879965 148881067 AACAGCAGTTGCAAACTCC 59 148881108 148881129 GTCCTCTTATAAAGGTCACTGC 59 NA Rattus norvegicus 81 Rn60_10_0873.4 ENSRNOG00000057025 ENSRNOT00000086816 1 1 1 60 10 87470307 87470325 CAAAGAGGACCGTGATCGT 60 87470265 87470283 TCGTTTCCTGTAGCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 2 2 2 80 6 145776361 145778971 GTAACCCAGAGCTCATAGAGTC 60 145779012 145779030 CATCATCGTCCTCCTCGTC 60 NA Rattus norvegicus 81 Slc25a27 ENSRNOG00000010592 ENSRNOT00000052068 2 1 1 80 9 19886392 19886412 ATGGTCACCTACGAACATCTC 60 19886454 19890541 AATGACGGACTTCCAGAGG 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335,ENSRNOT00000078010,ENSRNOT00000035448 1 3 3 80 17 21639888 21639907 CTGGACAGGTAACCTCAGAG 59 21637131 21639846 TCATGTACGTAGTGACCGTG 60 NA Rattus norvegicus 81 RGD1566264 ENSRNOG00000036836 ENSRNOT00000051929 3 1 1 81 7 144886897 144886918 GTCAAAGAACCATACCAAACAC 58 144886726 144886857 TTCATATCTTTGTGACCCGAG 58 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 3 2 2 80 16 54024574 54024701 AATGGTGGTTATCTGGGTATCC 60 54024736 54024760 AACTGATCTAGTGATAAACCCTACC 60 NA Rattus norvegicus 81 Best4 ENSRNOG00000018749 ENSRNOT00000025346 3 1 1 80 5 136017053 136017159 GACCGAAACTTTCAGGTGTC 59 136017201 136017220 CCAGTACAGATCCTGCTCAG 60 NA Rattus norvegicus 81 LOC100910483 ENSRNOG00000048545 ENSRNOT00000017253 1 1 1 80 9 113835286 113835304 CATGAAGCGTAAACTGCCT 59 113828856 113835242 TGTCCTGGGTCTGAATCTG 59 NA Rattus norvegicus 81 Bcas2 ENSRNOG00000018783 ENSRNOT00000025592 1 1 1 80 2 205664319 205664850 AGCATGAAGCGATATGAACTG 59 205664889 205664910 ATTGTTTACACAGTCTTGCCAC 60 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 2 2 3 80 20 5094135 5094153 GAGTGATGACAGAGGAGGG 59 5094193 5094291 TATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 3 2 2 94 7 121311154 121328651 TCGTGTCTTGGGTCTTCTC 59 121328708 121328727 GTAGATGCAGAACTCCTCCT 59 NA Rattus norvegicus 81 Fbxo33 ENSRNOG00000005285 ENSRNOT00000059316 3 1 1 80 6 80308537 80308555 AGCAAGGAAGTCTGTCCAG 59 80307290 80308494 CAAACAGCTGCTGAATTTGC 59 NA Rattus norvegicus 81 Nfkbia ENSRNOG00000007390 ENSRNOT00000009894 3 1 1 81 6 76268639 76268658 CCTCTATCCATGGCTACCTG 59 76268484 76268595 CCATTACAGGGCTCCTGAG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449,ENSRNOT00000086093 3 2 2 84 8 87211944 87211966 CTCTGAATACCAGAGACATAACC 58 87212010 87213469 TTGACAATAAGCCGTGCTG 59 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774,ENSRNOT00000079917 1 2 2 80 5 7832988 7833009 GCAGGGAAATCTGATCAAAGAC 60 7830576 7832950 CATGAGACAAATTCACTTCCCA 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087,ENSRNOT00000015084 2 2 3 80 1 136699332 136707668 ATCATTCCACACTATGGCTG 58 136699271 136699290 ACAGACGATGACAAACACTC 58 NA Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 1 1 1 82 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432446 121432464 GTGCAGGAAGGAGATGAGG 60 NA InUTR Rattus norvegicus 81 Hspa13 ENSRNOG00000060979 ENSRNOT00000081096 1 1 1 80 11 14149253 14149276 GGAACTCTTGATGTGTCATTACTG 60 14147358 14149217 TCCAAGTTTGTTGTTTCCAGAC 60 NA Rattus norvegicus 81 Tmem132a ENSRNOG00000021338 ENSRNOT00000028971 3 1 1 80 1 226914458 226914807 CACCTCTATCGAGGTTCGA 58 226914396 226914415 GAGACCTTGTCATCTGTCAC 58 NA Rattus norvegicus 81 AABR07033279.1 ENSRNOG00000050713 ENSRNOT00000009911 2 1 1 82 11 15088147 15088165 CAAGGGTCCATACAGAGGG 59 15088208 15089214 CCGCTTGCTCATTTAATTTCAG 59 NA Rattus norvegicus 81 Fgf19 ENSRNOG00000020899 ENSRNOT00000028365 2 1 1 80 1 218058931 218061400 GATATACGGGCTGATTCGCT 60 218061443 218061461 CTGTACTGGTTGTAGCCCA 59 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 2 1 1 80 10 89095464 89095482 TAGAGTTTCGGAAGCTTGG 57 89095525 89095803 ACATATTAGGGCTGCATCTG 58 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 2 2 2 80 7 54910515 54910535 TATGGAGAATTCAAACGTGCC 59 54910576 54912745 CAATTTCATGAAGGCCTTGC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654,ENSRNOT00000065402 1 2 2 80 5 14333761 14333780 AAAGGAACTCATGGAAGGCA 60 14330903 14333720 CCACGAAGTTTCTGTGAACTC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000088023 2 2 6 129 12 41229496 41229515 AAATGTGGCTGGTTCAAACC 60 41228383 41229404 GACCTTTGTCAGCACTTCC 59 NA Rattus norvegicus 81 Bcl2l14 ENSRNOG00000028632 ENSRNOT00000032229 2 1 1 80 4 168172076 168172096 GAGAGTGTCCCAAAGATTCTG 59 168172135 168175031 GTCTTCTCCATCTTTCTTCGAG 59 NA Rattus norvegicus 81 Pou3f2 ENSRNOG00000006908 ENSRNOT00000009043 2 1 1 60 5 36682279 36682299 TTGAACAAGTGGTTGGAAGAG 59 36682239 36682257 TCTTGTCTATGCTGGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000013569 1 1 2 80 4 61924605 61939863 ATCTAGAAGGTATCTCAGACGAG 59 61939903 61939921 TCTCATCCAACTCCAGCAG 59 NA Rattus norvegicus 81 Vill ENSRNOG00000011446 ENSRNOT00000015888 1 1 1 80 8 127752272 127752290 GTCCTACGAGGAGATGGTG 59 127752331 127752530 TGGAAATTATGGACTTCTGCTG 59 NA Rattus norvegicus 81 Pak1ip1 ENSRNOG00000023799 ENSRNOT00000036195 3 1 1 85 17 21587994 21588014 AGCAAAGATGAGACCATTCAC 59 21584610 21587948 CAAGTTACTGTGCCACTGTG 60 NA Rattus norvegicus 81 Sharpin ENSRNOG00000012812 ENSRNOT00000018031 1 1 1 80 7 117414105 117414201 TCCCATAAGGCTGCAAGTC 60 117414043 117414061 ATCTGCAGTGAGACATGGG 60 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 2 1 1 80 2 204298381 204300623 ACCAAAGATGGTTTGGTCG 58 204298319 204298340 GAAACATCACAATAAGACAGGC 58 NA Rattus norvegicus 81 Adam11 ENSRNOG00000002753 ENSRNOT00000064429 2 1 1 80 10 90738950 90739125 CTGGAGCTAAACCATCACC 58 90739169 90739187 AGTACTGTGTTGCCTTGTC 58 NA Rattus norvegicus 81 Spatc1 ENSRNOG00000029590 ENSRNOT00000050522 1 1 1 87 7 117342823 117349553 AGAAGATCATCCAGGCCTC 59 117349604 117349622 ATGCTCACATAACGCTGTG 59 NA Rattus norvegicus 81 Bop1 ENSRNOG00000021773 ENSRNOT00000025134 1 1 1 80 7 117515435 117515453 GGAGCTTACGAAGAAGCTG 58 117515285 117515392 CAGATGATGTTGTCACCTGC 59 NA Rattus norvegicus 81 AC139976.1 ENSRNOG00000059843 ENSRNOT00000078098 1 1 1 135 6 101868038 101873400 CCTCCATTGTTGGGTTGTG 59 101865081 101865099 AGTATGATGGGATGCCGAG 59 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 3 2 2 80 17 12622987 12623005 AGTGATGTCTGGAGCTTCG 60 12621830 12622943 GCTCCCTTTCATCCCTCTG 60 NA Rattus norvegicus 81 AABR07065839.1 ENSRNOG00000050652 ENSRNOT00000073713 2 1 1 60 6 143206571 143206590 TCAGAAGTTTAAGGGCAAGG 58 143206530 143206548 CATGTAGGCTGTGTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde1b ENSRNOG00000036828 ENSRNOT00000055272 3 1 1 80 7 145141549 145141681 GGATGAATTCGTAGAGCTGC 59 145141724 145141742 TTCACTTGCTGGAAATGGC 59 NA Rattus norvegicus 81 Scyl3 ENSRNOG00000025318 ENSRNOT00000003551 3 1 1 81 13 82241601 82242547 TCCTGAGGAGATGTCTCCA 59 82242591 82242610 CAAAGCTCCAAAGGCATAGG 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 1 1 1 60 6 142059925 142059943 TACAGCCTGGATGAACTGG 59 142059883 142059901 TCGAGCAATCCACTCTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr576 ENSRNOG00000047926 ENSRNOT00000071529 2 1 1 60 3 75719772 75719793 CAGGTCTAATGAGATCAACCAC 59 75719733 75719756 GCAAGATATTAACAGAAGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884,ENSRNOT00000033265 1 2 2 80 4 68812980 68812999 TTGGTTTGATACGTCAGCCT 60 68811653 68812938 CCTGATTGGTAACATTGCCC 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 1 1 2 140 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120114 4124688 ACACTGATCCTGCTCTCAG 59 NA Rattus norvegicus 81 Trhde ENSRNOG00000005278 ENSRNOT00000007461 3 1 1 80 7 57341329 57341352 TTCAGAGTCAACTATGACCTAAGG 60 57341161 57341293 ACTGACAGAAAGTACCTCATGG 60 NA Rattus norvegicus 81 Dedd2 ENSRNOG00000046112 ENSRNOT00000072616 3 1 1 125 1 82074122 82081601 AAGGTGACCTGTGACATCC 59 82074015 82074033 CTGTCCAAACACATCCAGC 59 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 1 2 2 80 3 119061206 119061224 TTCGCTCCATTAAGCTGTG 58 119058774 119061162 TGTCTGTACCGTGTCTGAC 59 NA Rattus norvegicus 81 Mir1249 ENSRNOG00000041492 ENSRNOT00000063245 2 1 1 65 7 125861244 125861262 CAAGTTCCCTATGCCTGGA 59 125861197 125861216 GAAGGACGAGTAGGAGTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss37 ENSRNOG00000012201 ENSRNOT00000016251 2 1 1 80 4 68344807 68347473 GCTATTTACCAAATCTGAGGGT 58 68344748 68344768 TGGGATAAATTGTCTGCTCTG 58 NA Rattus norvegicus 81 Tmem102 ENSRNOG00000015057 ENSRNOT00000020578 2 1 1 86 10 56412388 56412406 AGGAGAGTTGGAGTGAAGG 58 56412219 56412340 GGTGAACTAGACCGAGTAGAG 59 NA Rattus norvegicus 81 Fbl ENSRNOG00000019229 ENSRNOT00000026021 1 1 1 80 1 85110542 85110563 AGAAGAGGACCAACATTATTCC 58 85110603 85111571 CATCCACCATTGCAATAAGC 58 NA Rattus norvegicus 81 RGD1560291 ENSRNOG00000009241 ENSRNOT00000029672 1 1 1 80 7 17504272 17505829 GTTCTGAAGTCACTATGTATGACC 59 17504215 17504238 GTTATTCCTTAAGACTTCAGCCAG 60 NA Rattus norvegicus 81 Scamp1 ENSRNOG00000061582 ENSRNOT00000084729 2 1 1 80 2 23885137 23908949 TCTCTGATTCTAGAACGCCTC 59 23885077 23885095 TCGGCTTCATTATTGCTGG 58 NA Rattus norvegicus 81 Scamp1 ENSRNOG00000061582 ENSRNOT00000084729 3 1 1 80 2 23885136 23908947 TCTGATTCTAGAACGCCTCC 59 23885075 23885093 GGTCGGCTTCATTATTGCT 58 NA Rattus norvegicus 81 Vom1r50 ENSRNOG00000031734 ENSRNOT00000049387 2 1 1 60 9 52400963 52400985 CTACAGTACATTCACAGTACCCA 60 52400925 52400943 TTGTGGCTCTGTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrich2 ENSRNOG00000025254 ENSRNOT00000034817 3 1 1 80 10 105406899 105412591 CAGGATCAGTTGGACAAGC 59 105406837 105406855 GGTTATGCTCAGAGACAGC 58 NA Rattus norvegicus 81 Vom2r16 ENSRNOG00000054736 ENSRNOT00000080747 2 1 1 80 1 62848043 62848061 ATTCAAGTGGGAAACAGCT 57 62848105 62851634 ACACAGAAGATGGCATCTG 58 NA Rattus norvegicus 81 Sncg ENSRNOG00000058006 ENSRNOT00000087150 3 1 1 224 16 10725386 10725689 CAAAGTGTAACCTCGGTGG 59 10722396 10722415 CTAGTCTCCTCCACTCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Cep350 ENSRNOG00000003882 ENSRNOT00000005235,ENSRNOT00000005195 1 2 2 80 13 73585023 73588233 TTCAGTTCGCAGATGATACC 58 73584962 73584980 TTCGTACTGGTTTGACCAC 58 NA Rattus norvegicus 81 Zfp526 ENSRNOG00000047526 ENSRNOT00000071251 1 1 1 69 1 82090587 82090605 GGAGGGTCTGTGTCAAGAG 59 82093375 82093393 CACCATCTCTGCCATTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp526 ENSRNOG00000047526 ENSRNOT00000071251 2 1 1 97 1 82090559 82090577 ATAGTGAAGGGTCCCACAC 59 82093375 82093393 CACCATCTCTGCCATTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Synj2bp ENSRNOG00000006399 ENSRNOT00000009122 3 1 1 80 6 105231241 105240471 ATAAGATCCTCTCGGTAAATGG 57 105231182 105231200 ATCCTGCATTACGGAAGAG 57 NA Rattus norvegicus 81 Slc16a1 ENSRNOG00000019996 ENSRNOT00000027234 2 1 1 84 2 207119542 207119560 ATATTCAGTGCAACGACCA 57 207119608 207122617 TACTGCTGATAGGACCTCC 58 NA Rattus norvegicus 81 Best3 ENSRNOG00000005491 ENSRNOT00000007309 2 1 1 80 7 60016081 60016101 CTACAAACTGCTGTACAGGGA 60 60016137 60019756 GTAAGTAACAATCTGTACACCAGAC 60 NA Rattus norvegicus 81 Pik3c2g ENSRNOG00000034228 ENSRNOT00000041499 1 1 1 80 4 174017143 174017164 GAAATACGTACACGACAATCTC 57 174017204 174032287 CTCTGCTTTATCTTCGTGGT 58 NA Rattus norvegicus 81 Apol11a ENSRNOG00000023122 ENSRNOT00000031568 2 1 1 81 7 118840560 118840579 AAAGAGACCTGAAGAGCCTG 60 118837400 118840517 TCCTCCTCACTTGACAACTC 59 NA Rattus norvegicus 81 Apol11a ENSRNOG00000023122 ENSRNOT00000031568 3 1 1 82 7 118840560 118840579 AAAGAGACCTGAAGAGCCTG 60 118837399 118840517 TTCCTCCTCACTTGACAACTC 60 NA Rattus norvegicus 81 rno-mir-3542-1 ENSRNOG00000050396 ENSRNOT00000074009 1 1 1 67 17 9370882 9370900 CTATGGTAGGGAGAGTGGG 58 9370931 9370949 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam120a ENSRNOG00000016779 ENSRNOT00000060568 2 1 1 80 17 16160199 16160218 AAGATTGGCTGGGAGAAGAC 60 16160257 16162116 ACCTTCTACCTTTACTTGGTCTC 60 NA Rattus norvegicus 81 RT1-Da ENSRNOG00000032844 ENSRNOT00000081202 1 1 1 60 20 4129403 4129422 TCCGCAAATTCCACTATCTG 58 4129362 4129385 ACCTCACAGTCATAGTAATCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000085165,ENSRNOT00000027064 2 2 2 81 9 82638376 82638394 GATACCAGATCACCCACCC 59 82638434 82638607 GGATGGATGTAAACATTTCCTCTG 60 NA Rattus norvegicus 81 Corin ENSRNOG00000002302 ENSRNOT00000064128 3 1 1 80 14 38352561 38352583 GATACCACACTGAGAATAACAGC 59 38352623 38402949 CACAGAGCGATTGCTTTCC 60 NA Rattus norvegicus 81 Mut ENSRNOG00000050843 ENSRNOT00000075279 1 1 1 80 9 23337520 23337538 AGGAATCCCTAAACTTCGC 57 23335951 23337479 CCAACAATTACTTCAGAACCAG 58 NA Rattus norvegicus 81 Rpl30 ENSRNOG00000005975 ENSRNOT00000057587 2 1 1 80 7 73214482 73214500 ACATTGAATTGGGCACAGC 59 73213616 73214441 TAATATCGGAATCACCTGGGTC 60 NA Rattus norvegicus 81 Atp5j ENSRNOG00000001551 ENSRNOT00000002116 2 1 1 108 11 24287378 24287397 TATCAGCAAGAGGTGGACAG 59 24286912 24287309 GGACTTCAAATTTGGGATCCT 58 NA Rattus norvegicus 81 Il17rc ENSRNOG00000027376 ENSRNOT00000037788 2 1 1 81 4 145433141 145433162 TTTGGCTTCTTACTATACTGGG 58 145433204 145433423 TGTTCTGAGGTCCAGTCAG 59 NA Rattus norvegicus 81 RGD1563986 ENSRNOG00000011854 ENSRNOT00000015921 2 1 1 80 4 68572518 68572537 TCTTCTATGTGAACGTGGCT 59 68572271 68572480 CAAATATCTTCTCTGTGGTACAGG 59 NA Rattus norvegicus 81 Crip2 ENSRNOG00000005041 ENSRNOT00000006804 3 1 1 106 6 137956697 137956715 CTGCAACAAGACACTGACG 60 137956785 137957036 CGATATTCACGCCTTTGGG 59 NA Rattus norvegicus 81 Etv6 ENSRNOG00000005984 ENSRNOT00000007889 1 1 1 80 4 167754720 167856696 GTAGCATTAAGCAGGAACGG 59 167856739 167856757 CATGAAGTGGAGTCGAGGG 60 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000055235 1 1 3 80 1 167333189 167333208 CTTCAGTCTCAATGTGGTGG 59 167333251 167333372 TCATGGATGGTGAAGTCCT 58 NA Rattus norvegicus 81 LOC100912604 ENSRNOG00000046379 ENSRNOT00000071712 2 1 1 80 3 14589846 14590603 TCGATGAGGATGTCATTGAGG 60 14590645 14590663 GGAGAGTCAGCTTTGAGCT 59 NA Rattus norvegicus 81 Ccrn4l ENSRNOG00000010799 ENSRNOT00000014348 1 1 1 60 2 140302959 140302979 AGTTATGCAGTGGAACATCCT 60 140304949 140304968 CTGGACAAAGTTGTCTTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 1 2 2 80 8 58089853 58089872 TCCAGAGTTGGTTCACTGAG 59 58088771 58089812 CTTGTTTAGAGTGTGCTTGGT 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 1 2 2 80 9 27408407 27408427 CCATTCTCAACTACATTGCCA 59 27408468 27409549 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Crnkl1 ENSRNOG00000040045 ENSRNOT00000061588 1 1 1 60 6 18351209 18351229 AGAACTGTGATTAGCAACTGG 58 18351169 18351190 GAATTTCCTTCAGACTTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370,ENSRNOT00000066431 1 2 2 82 7 118179222 118179240 TAGTGCTGATGCAGACAGG 60 118176517 118179177 CGGTAGCATTATTCACCTCG 59 NA Rattus norvegicus 81 Ryk ENSRNOG00000008593 ENSRNOT00000067203 1 1 1 80 8 111353629 111353647 CCTTTAACCTGCTAGTGCC 58 111353688 111359423 CCAGCTTATATTCAACCTTGGA 58 NA Rattus norvegicus 81 Fbxo36 ENSRNOG00000017053 ENSRNOT00000022901 2 1 1 80 9 92435927 92435948 GTTTGAAATTGTAGGACAAGGC 59 92435986 92477210 CTAAAGATGATCTGAGTTCGGG 59 NA Rattus norvegicus 81 Gps2 ENSRNOG00000016360 ENSRNOT00000022041 1 1 1 80 10 56526368 56526461 CACTCAGACAGGGTTCCTC 59 56526505 56526523 AAGCTAGTCTGCTGGTTGG 60 NA Rattus norvegicus 81 AC128212.1 ENSRNOG00000054355 ENSRNOT00000082247 3 1 1 125 8 130569866 130569887 TTCCTGCTAGTTGTGGCTC 60 130569759 130569778 TGATTGCTCGCTCAGTAGAG 60 NA Rattus norvegicus 81 Galr3 ENSRNOG00000027060 ENSRNOT00000014349 3 1 1 86 7 120273128 120274023 TAGGACTGAGGAAGATGGCT 60 120274072 120274090 CAAAGATCACAGGCACTGC 60 NA InUTR Rattus norvegicus 81 Lsm12 ENSRNOG00000020894 ENSRNOT00000028368 1 1 1 111 10 90110172 90125049 GTTAGTAAGCTTGCCAGCA 58 90110079 90110097 GAATGGTCTGGAAGAGCTG 58 NA Rattus norvegicus 81 Lsm12 ENSRNOG00000020894 ENSRNOT00000028368 3 1 1 112 10 90110173 90125050 TGTTAGTAAGCTTGCCAGC 58 90110079 90110097 GAATGGTCTGGAAGAGCTG 58 NA Rattus norvegicus 81 Slco1a2 ENSRNOG00000031249 ENSRNOT00000049569 1 1 1 80 4 176446648 176447982 ATAACTTCAGGCGCATTTACC 59 176446588 176446609 GTATCAGAATGAAGAGTGCAGG 59 NA Rattus norvegicus 81 Vat1 ENSRNOG00000020684 ENSRNOT00000028084 2 1 1 83 10 89368742 89370590 TTGTCACTTACGGAATGGC 58 89368677 89368695 TGAACTGATTCCACCAGGT 59 NA Rattus norvegicus 81 Sp100 ENSRNOG00000022769 ENSRNOT00000034152 3 1 1 80 9 92700468 92704866 TTCCAAACCACTGGAAAGC 59 92704908 92704928 TCTTTATATCTACCAGCCGCA 59 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000079861 2 1 2 93 13 70175093 70175111 AGAACAAGTTCGTGGACGA 59 70176632 70177311 GTCATGTTTCCCACACGAC 59 NA Rattus norvegicus 81 Olr1083 ENSRNOG00000061480 ENSRNOT00000088783 3 1 1 60 7 13587665 13587684 CCTCTCACCTTTCCATTGTC 58 13587624 13587642 GAACTGACGTACACTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arglu1 ENSRNOG00000024142 ENSRNOT00000057347 2 1 2 136 16 86607389 86607407 GACAGAGACAAGCTGAGCT 59 86609772 86624237 TTGTTCTTCAGCCAGTTTGG 59 NA Rattus norvegicus 81 Kcns2 ENSRNOG00000011369 ENSRNOT00000015707 1 1 1 166 7 73588250 73588268 CAGGTTTGGGAAGTTTCCC 59 73588991 73589011 GCCTACATTGATTCGGATCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Khdc1c ENSRNOG00000028595 ENSRNOT00000051403 1 1 1 80 9 27546612 27546748 GAGGAATACATATTTGGCCCG 59 27546790 27546808 CCTTTCCAGCTGAATGAGG 58 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126,ENSRNOT00000077125 2 2 2 80 1 175208243 175208261 AGAACCAGAATGCAACTCC 58 175202221 175208202 CCATTATTGAAACAACAGGTGG 58 NA Rattus norvegicus 81 LOC100909683 ENSRNOG00000046224 ENSRNOT00000071599 3 1 1 60 7 15722792 15722812 TTCACATTTGGCTACACTCAC 59 15722752 15722772 CTACATAGCGGTCATAACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000079249 3 1 3 98 1 66253720 66253738 CCTGAGGAGAGCAGAAGAC 59 66253637 66253658 AAACCTTGGAACGTGACCT 60 NA Rattus norvegicus 81 Akap4 ENSRNOG00000002921 ENSRNOT00000003939 3 1 1 80 X 16302519 16306010 TGGCACTACAAAGATGTCTG 58 16302458 16302478 TTTGGGCTGTAAAGATCTACC 58 NA Rattus norvegicus 81 Slc26a1 ENSRNOG00000000041 ENSRNOT00000000047 3 1 1 103 14 2052583 2053343 GCTTTATCAGGTCCTCATGG 58 2053409 2053427 AGATGGTCACAGAAGCTCC 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 1 2 2 88 13 87992078 88000938 GAGCAACTACGGATTTGCC 59 88000990 88001008 AATTCTCACAGGCAACCCA 60 NA Rattus norvegicus 81 Mterfd2 ENSRNOG00000037376 ENSRNOT00000056558 2 1 1 82 9 100443966 100443985 CCAGTTGCTGAAACTGTCTG 60 100442211 100443922 TCAGTTTCCCTTCTCCAAGG 59 NA Rattus norvegicus 81 Mbl1 ENSRNOG00000011706 ENSRNOT00000015723 3 1 1 81 16 18740565 18741424 TAACCAACAAGTTGCATGCC 60 18741468 18741486 AAGGGCATCCTTTCATGGT 59 NA Rattus norvegicus 81 Col9a1 ENSRNOG00000012920 ENSRNOT00000018116 3 1 1 80 9 30420732 30420752 CTGTTTCTCATGGTGGAAGTG 59 30420791 30420924 GAGAAATCAGGTCAAATCCTGG 59 NA Rattus norvegicus 81 Abat ENSRNOG00000002636 ENSRNOT00000003633 2 1 1 80 10 7097344 7097362 CACCTTCTGTTCCTTCGAC 58 7094491 7097301 AGTACCACACCTTTGTTCCT 59 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034,ENSRNOT00000018552 3 2 2 80 9 27642216 27642234 GATGAGAAGTCGGTCTCCA 59 27639509 27642173 TTGTTCTTTCTTGGTAGGGC 58 NA Rattus norvegicus 81 Cops7b ENSRNOG00000018723 ENSRNOT00000025411 1 1 1 80 9 93626406 93628014 CTTGCATGAATGGTGTGAC 57 93628058 93628076 TCTTTGTACTGGTTGGCTC 57 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 1 1 1 81 7 136316878 136316896 CCCAGTGATGAGGTTTCCA 59 136316941 136380885 ATTCCCAGTCCTGCATCAC 60 NA Rattus norvegicus 81 Aldh9a1 ENSRNOG00000004027 ENSRNOT00000005611 2 1 1 80 13 85587828 85587847 CAGTTTCTGTGTCAGCATCG 60 85587888 85588440 CATCTCCATGATCTTCATGCC 59 NA Rattus norvegicus 81 Sftpa1 ENSRNOG00000011438 ENSRNOT00000047870 1 1 1 84 16 18717970 18718229 AACAATGGGAGTCCTCAGC 60 18718277 18718295 AAAGTTGACTGACTGCCCA 60 NA Rattus norvegicus 81 Syp ENSRNOG00000059720 ENSRNOT00000085907 3 1 1 91 X 15704081 15704099 CCTTCCTCTACTCCATGGG 59 15703327 15704027 CAGAAAGTCCATCATAGGCC 58 NA Rattus norvegicus 81 Ppap2b ENSRNOG00000008116 ENSRNOT00000011237 3 1 1 80 5 124751513 124751532 TACAAACACCATCCTAGCGA 59 124751574 124763664 AGACACGAAGAACACTATGC 58 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527,ENSRNOT00000017453 2 2 2 80 2 143670404 143670424 TCTACAATGGACAGATTCTGG 57 143670465 143671698 TTTCTATGCAGATAGCCGTC 58 NA Rattus norvegicus 81 Sgk3 ENSRNOG00000049052 ENSRNOT00000072210 1 1 1 80 5 9080507 9086292 AGAGCTTTACAACCATCCAG 58 9080446 9080466 TCATCTTCAGATGGATCTGAC 57 NA Rattus norvegicus 81 Col19a1 ENSRNOG00000012759 ENSRNOT00000017169 2 1 1 80 9 30844110 30844128 GACTGTCAGGGACAAACCA 60 30827716 30829204 AGATGTGACATGTTACTGTCGT 60 NA Rattus norvegicus 81 Fam21c ENSRNOG00000011653 ENSRNOT00000015620 1 1 1 80 4 148148998 148153698 AAGCTGAGCAGGAGAAGAC 59 148153740 148153760 GTAACCCATAGTTCACAGCCT 60 NA Rattus norvegicus 81 Atp6v0b ENSRNOG00000019655 ENSRNOT00000026704 2 1 1 81 5 136720433 136720661 TTTGATGTGGCATGGTTCC 59 136720370 136720389 CAGACAGGGAAATTGCTAGG 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 2 3 3 80 7 117362799 117362817 CGCTTACCTTACTCCCACC 60 117362656 117362757 ACTTGCACATTCTTTAGCTGG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550,ENSRNOT00000078720 3 2 2 80 8 116376251 116376503 CAAGCAGATGAAGATCATCCAC 60 116376192 116376210 GTGTTGCTGTAGACAACCG 59 NA Rattus norvegicus 81 Hs6st1 ENSRNOG00000014516 ENSRNOT00000019966 3 1 1 81 9 42620285 42620303 AACTCACCAACTGTGTTCC 58 42620344 42656276 GTGATGTAGTAGAACTTTCTGGG 59 NA Rattus norvegicus 81 AABR07042903.1 ENSRNOG00000030174 ENSRNOT00000043480 1 1 1 85 19 14346728 14346746 GACCTACAGCTACCTGACC 59 14346799 14346832 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000017254 2 1 2 114 2 207272116 207272135 TTTCTGAGTCTTGCCTCTCC 60 207272212 207275333 GTGGCCATGACTGAAATCC 59 NA InUTR Rattus norvegicus 81 Rad54l ENSRNOG00000013148 ENSRNOT00000018004 1 1 1 80 5 134951967 134952491 GCTGTGTAATCATCCAGCTC 59 134951906 134951924 GGGAAGATACCCAAAGTGC 58 NA Rattus norvegicus 81 Rad54l ENSRNOG00000013148 ENSRNOT00000018004 3 1 1 80 5 134952820 134954483 TCAGTATTGTGAACAGGTGC 58 134952759 134952777 CCACCTGCTCAATCTTCAC 59 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000072502 2 1 2 80 3 154045030 154045050 GCATTTACTGGGTAGGATTCG 59 154045092 154045360 GGGAGTACCTGAACACCTC 59 NA Rattus norvegicus 81 Dlec1 ENSRNOG00000032085 ENSRNOT00000052275 2 1 1 80 8 127799413 127799433 GACTTAGAGTACACCACAGAC 58 127799475 127799644 ACTTGCCTTCTTGATGGTG 58 NA Rattus norvegicus 81 LOC100359763 ENSRNOG00000013191 ENSRNOT00000017602 1 1 1 60 7 93376581 93376600 TCAAGCTGGTTTCAAAGCAC 60 93376623 93376641 TCTCCACCCTTTGTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 3 1 1 111 2 28054717 28054736 ATAACCACGGTTCCCTACTC 59 28054810 28058631 TGTCAGAGTGAGCTCACTC 59 NA InUTR Rattus norvegicus 81 Lpcat2 ENSRNOG00000016643 ENSRNOT00000022359 1 1 1 80 19 15520517 15521802 ACAAGCTGGATACTGTAACCT 59 15516626 15516647 TGAACAGTTGACAGAATGTGAG 59 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000077950,ENSRNOT00000039553 1 2 2 60 20 4170826 4170845 GACAACATCATCACGCTCTC 59 4170867 4170886 CCACCTCCCAGTAGTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685067 ENSRNOG00000029191 ENSRNOT00000037181 1 1 1 80 2 248237720 248237738 AGTCTCTACCTAGAGGCCA 58 248237780 248238828 AACATGATTTGCCTTCACTCC 59 NA Rattus norvegicus 81 Rnf208 ENSRNOG00000010607 ENSRNOT00000014087 3 1 1 231 3 2462470 2462488 CTGCTGACCTCTGCTACAG 60 2462871 2462889 TTTCAGGCAGGACATGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 3 2 2 80 10 90300747 90300765 TTTGCTTCTGTTCTACCCG 58 90300172 90300704 TTTACTGACAATCAGCGTGG 59 NA Rattus norvegicus 81 Uap1 ENSRNOG00000002926 ENSRNOT00000058560 2 1 1 80 13 88464953 88464973 TTGAAGGATGCCAATGATGTG 59 88464086 88464913 ATAGCCTTCAAGTCCTTCTCC 59 NA Rattus norvegicus 81 Ddx20 ENSRNOG00000015274 ENSRNOT00000068152 1 1 1 80 2 208145578 208146158 CCTTCTCCCTTTACCAGATCC 60 208145518 208145537 ATCGCAGCTTTAACTTCCAC 59 NA Rattus norvegicus 81 Duoxa2 ENSRNOG00000017805 ENSRNOT00000024201 3 1 1 81 3 114237876 114238264 CAGAAATTGTGGCTGTACAC 57 114238307 114238326 GTACTGAAGGCTTTGTAGGA 57 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796,ENSRNOT00000066244 3 2 2 80 7 117663823 117663841 CACCTTGCACTAGAATCCC 58 117663677 117663781 GGTGGATGTATCTGTCATCTC 58 NA Rattus norvegicus 81 Atp6v1e2 ENSRNOG00000015566 ENSRNOT00000020845 1 1 1 60 6 10511706 10511726 CTAGAAAGCCGACTGAATCTC 58 10511666 10511686 ACAAAGTCCTTCGTATCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt2b ENSRNOG00000014385 ENSRNOT00000019349 1 1 1 115 2 207449029 207455085 GTCCTGGTGGTACATAGGG 59 207448932 207448950 CTACTGAGCGCATGATGTC 59 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 1 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Zcrb1 ENSRNOG00000004996 ENSRNOT00000006780 1 1 1 105 7 134595822 134595842 AGGAAGAGTAAAGGTGTTGCA 60 134595447 134595761 CCTTTATCACTCTACCGAATAACTG 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 3 2 2 82 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473129 38473147 GGTTGATGACATCTCCACC 58 NA Rattus norvegicus 81 Tmem5 ENSRNOG00000004421 ENSRNOT00000006051 1 1 1 80 7 64329774 64330615 TTTCTGCAAGAGAACAGTGG 59 64329713 64329732 GGTCACTATGAAGCAAAGCA 59 NA Rattus norvegicus 81 Zfp324 ENSRNOG00000027436 ENSRNOT00000036874 3 1 1 83 1 65607925 65608683 CAGCCTTGGATCCAATTACAG 59 65607862 65607880 ATCCTAACAGGCCTGTCAC 59 NA Rattus norvegicus 81 RGD1564719 ENSRNOG00000022393 ENSRNOT00000033396 2 1 1 82 1 91661737 91661904 CTTGCTCGCTTTAGAAATTCTG 58 91661676 91661694 GCTGGGAAGTACTGTTCAC 58 NA Rattus norvegicus 81 Tjp2 ENSRNOG00000015030 ENSRNOT00000065921 1 1 1 80 1 241964359 241964380 CCTCTACCTGTTAGAAATCCCT 59 241963473 241964321 AGGATGTCTCTATACACGTCTG 59 NA Rattus norvegicus 81 Kap ENSRNOG00000005858 ENSRNOT00000007806 1 1 1 98 4 167551951 167552099 GCATACAGATTTCTGAGCTCTC 59 167550152 167550170 ATGGAAACTCCACTGTGCT 59 NA Rattus norvegicus 81 Kdelc2 ENSRNOG00000007177 ENSRNOT00000009497 2 1 1 80 8 57978809 57978827 GGCAGTTAACTGCTAGGGA 59 57978871 57980275 GCTCCGCATATTTCTGCAG 60 NA Rattus norvegicus 81 Fam212b ENSRNOG00000015691 ENSRNOT00000021001 1 1 1 82 2 208170869 208182821 AAACAGGAGCTGATGTCCA 59 208182867 208182885 AGTTCTTGAAGTGCACCCA 60 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073 3 1 2 95 1 99532631 99533735 TCATGTGAGAGGTTGGTGTC 60 99533793 99533811 CTGGTACAGGCATCTCTGG 60 NA Rattus norvegicus 81 Zfp275 ENSRNOG00000061073 ENSRNOT00000079860 1 1 1 80 X 157464616 157464635 GGAGTGGCTGAGTCTAAGTC 60 157463530 157464573 ACAGGAACTCCAATGGAGG 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 1 2 2 80 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824945 43824963 GCAGATTATGGGAGGATGC 58 NA Rattus norvegicus 81 Ctnnd2 ENSRNOG00000010649 ENSRNOT00000044871 2 1 1 80 2 84045910 84052428 AAAGGAGATAAGCACTCTCCA 59 84052469 84052488 CCTCAGATCTCGATACTGCC 60 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 1 2 3 94 2 210547142 210550355 CTTCTTCGACATGGATGGG 58 210547066 210547084 AATCATGTGGCTACAGTGC 58 NA Rattus norvegicus 81 Kcng3 ENSRNOG00000004535 ENSRNOT00000006094 2 1 1 130 6 6842160 6842178 TGTCTATGGTGGTGCTGTG 60 6795683 6842067 AGCTTCAATTATCCCGGAGG 60 NA Rattus norvegicus 81 Nsmce4a ENSRNOG00000020452 ENSRNOT00000027721 2 1 1 80 1 201109469 201109487 GGGAGGACATACTGAATGC 58 201106707 201109428 CTCGTGACACTTCATTAAACAG 58 NA Rattus norvegicus 81 Olr1666 ENSRNOG00000017868 ENSRNOT00000024040 1 1 1 60 19 27534999 27535020 TGTACCTCAGTTCTACATGGAC 59 27534960 27534981 TACAGAACAGAAGCAAACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000024036 1 1 2 80 2 209444640 209444658 TACGTTCCTCTGTTGATGC 58 209444702 209445891 TCTCATACTGGGTCTGTGG 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000082631,ENSRNOT00000024036 3 2 2 123 2 209446116 209446135 GCAAACGTTGTGATGAAGGA 60 209446980 209446999 TCATGACCATGTCACTAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Kcne1 ENSRNOG00000001984 ENSRNOT00000002717 2 1 1 60 11 32498575 32498594 GCTGAGTTACATCCGATCCA 60 32498534 32498554 AATGTACACGTTGAAAGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856,ENSRNOT00000066943 1 2 2 91 1 216819389 216819407 CAAGGTAAGCAGCACAACC 60 216818432 216819334 TAATGAGGTGAGTGCCAGC 60 NA Rattus norvegicus 81 Aldh2 ENSRNOG00000001344 ENSRNOT00000001816 3 1 1 80 12 40494728 40494747 TCTTCACAAAGGACCTGGAC 60 40494789 40497066 CATCGTAGCAGTTGATCCAC 59 NA Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 2 1 1 93 8 22951257 22951406 CACCCTCACGATCCTTCTG 60 22951463 22951481 GGACACAATGGTGCTTTCC 60 NA Rattus norvegicus 81 Cep250 ENSRNOG00000019340 ENSRNOT00000055251 2 1 1 80 3 151508910 151509631 AGCAGGAGTTCTTCAAGGG 59 151509675 151509693 GTCGGAAGGTTACCACCTC 60 NA Rattus norvegicus 81 Slc48a1 ENSRNOG00000053196 ENSRNOT00000079388 1 1 1 80 7 139277770 139278312 CAGCACCAGAGTTTCAAAGAC 60 139278353 139278372 TAGAAAGGCCCACTTGAAGG 60 NA Rattus norvegicus 81 Slc48a1 ENSRNOG00000053196 ENSRNOT00000079388 2 1 1 87 7 139277772 139278313 GCACCAGAGTTTCAAAGACC 60 139278363 139278381 GAGGCTGAGTAGAAAGGCC 60 NA Rattus norvegicus 81 Lats1 ENSRNOG00000014916 ENSRNOT00000020098 2 1 1 80 1 1804144 1804162 GTCCTGAAGTCTCATCAGC 58 1804204 1806438 ATCTTGAGATAATCCAACCCG 58 NA Rattus norvegicus 81 Frg1 ENSRNOG00000009846 ENSRNOT00000013078 2 1 1 80 16 53960071 53961246 TTGACATTGTGGGAATCTGG 58 53961286 53961307 CTCCTTTATCCATTTCAATGGC 58 NA Rattus norvegicus 81 Olr956 ENSRNOG00000053663 ENSRNOT00000085061 2 1 1 60 7 6753558 6753579 TCTTAAACCATCAGTCAAGCAG 59 6753519 6753539 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564039 ENSRNOG00000048021 ENSRNOT00000073262 1 1 1 87 3 143395910 143395931 TGTAATTTCCAGAGGGAATCCT 59 143394848 143394918 GACATAGTTTAGATATGGGCACTG 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932,ENSRNOT00000082892 1 3 3 80 8 128246251 128246269 ACCAATGCCTTGTATGTCC 58 128236903 128246207 GCTAAAGAGCGAGTGTACC 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006,ENSRNOT00000090755 2 2 2 88 1 263917746 263917765 CTCACGAGCTTGAAGTACCT 60 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 Hnf1b ENSRNOG00000002598 ENSRNOT00000047427 3 1 1 81 10 71209286 71209304 GTTCCCATCTGCAATGGTG 59 71209348 71217974 CAGTGGACACTGTTTACTGG 59 NA Rattus norvegicus 81 AABR07011744.1 ENSRNOG00000061747 ENSRNOT00000089063 2 1 1 131 2 167878151 167892233 TTCCCTTTGACAACAGAGGA 59 167878039 167878057 GTTTCTCCTCAGAGCTGGG 60 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 2 2 2 80 13 85852632 85852650 TGAACTACCCATCCACCAG 59 85852693 85854906 AGTGCTTTCCTGAGGATCTG 60 NA Rattus norvegicus 81 Mettl6 ENSRNOG00000057372 ENSRNOT00000084645 1 1 1 80 16 7581460 7586021 GACTACGTGAAGCAACATCC 59 7581399 7581420 AAGAAGGTCATCTCTAGTGAGG 59 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 3 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244775 GAATCCGGTCTCATAGCCTC 60 NA Rattus norvegicus 81 Epha8 ENSRNOG00000013036 ENSRNOT00000017559 1 1 1 80 5 155298942 155299351 CATCTGCAAGAAGAGGCAC 59 155298880 155298898 TGGCCATTCTGGTAATGCA 60 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 1 2 2 80 14 82775367 82775386 AGCTCTCAGAATCATCGTCC 59 82775429 82777079 ACTGCGATGCCTAGATCAC 60 NA Rattus norvegicus 81 RGD1309049 ENSRNOG00000014123 ENSRNOT00000018896 1 1 1 60 9 29337721 29337740 GTGAAGTATAACCGCAAGGA 58 29337680 29337700 GTTCTAAGATCCACTCGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 2 1 1 80 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070101 148070119 CTCTTTCCTGAGGCACTCC 60 NA DesignNoJunction Rattus norvegicus 81 Scd1 ENSRNOG00000013552 ENSRNOT00000018447 1 1 1 80 1 264171928 264172671 ACATGCTCCAAGAGATCTCC 59 264171867 264171885 GTCCATTCTGCAGGTTTCC 59 NA Rattus norvegicus 81 Cthrc1 ENSRNOG00000004578 ENSRNOT00000006142 1 1 1 80 7 77966929 77966947 GCCTCTGAGAATCCCAAGG 60 77966988 77970731 TAGGCACATCCCATTATACAGG 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 1 1 2 80 10 13808260 13808278 CCACTACGCTGAGTACTGG 60 13808320 13809262 CATTGATGGCAGATATGTCAGG 59 NA Rattus norvegicus 81 Olr903 ENSRNOG00000047956 ENSRNOT00000050898 2 1 1 60 7 5401836 5401856 TTCTCCTTGCTATCATGTCCT 59 5401876 5401896 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop56 ENSRNOG00000007128 ENSRNOT00000009564 3 1 1 80 3 122806831 122807073 GATTGCTTCTCTGAGGTCC 58 122807116 122807135 CTCATAGAAAGAAAGCCGCT 58 NA Rattus norvegicus 81 Sdf2 ENSRNOG00000012121 ENSRNOT00000016297 3 1 1 80 10 65514506 65517218 TCTCTGGAAACCAGGAAGTG 59 65517260 65517279 CATTACAGAGCACTGTCCAG 58 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 2 1 1 111 1 64129300 64129318 TTGAGGGAGATGCAGAAGC 60 64129393 64130588 TTTCTAGGGAAGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ola1 ENSRNOG00000019047 ENSRNOT00000026040 3 1 1 80 3 59862206 59862230 TGGGCCCATTATAGATAAACTAGAG 60 59848069 59862171 CACATTATGTCATATTCGGGCT 59 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 1 1 1 80 14 9378054 9378072 CTGTACGCTTCTCCCTCAC 60 9378114 9381191 GAAATCGACTGCACTTCTGAC 60 NA Rattus norvegicus 81 Acat1 ENSRNOG00000007862 ENSRNOT00000010573 2 1 1 80 8 58176090 58178795 ATCTCAGTGAAAGGTAAACCAG 58 58176031 58176051 CTTTGGCACTTTACTGAAGTC 58 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000049901 ENSRNOT00000071299 3 1 1 84 3 73328369 73328387 ACCCACCACTCATTAAGCT 59 73328432 73328492 CTGGAAAGATTTAAGCTTGCTG 58 NA Rattus norvegicus 81 Tm4sf4 ENSRNOG00000016437 ENSRNOT00000022105 2 1 1 80 2 147533319 147540320 AGCGATTTGCGATGTTCAC 60 147540363 147540382 CGGCTGAGACGATAAATGAG 59 NA Rattus norvegicus 81 LOC691170 ENSRNOG00000022871 ENSRNOT00000034545 3 1 1 80 7 13323912 13323933 CAAGTTACAGCATGGATTTGAG 58 13323971 13335412 GCACTTACATTATGGACATCTG 57 NA Rattus norvegicus 81 LOC100910882 ENSRNOG00000019848 ENSRNOT00000026964 1 1 1 80 3 151708248 151711045 GTAGGAAAGGTTCGAGATGTG 59 151708188 151708206 AACAAACTCCACATAGGCG 58 NA Rattus norvegicus 81 Coro1b ENSRNOG00000021828 ENSRNOT00000029829 1 1 1 80 1 219399171 219399189 TGGATATTGACTGGTGCCC 60 219399233 219399355 GAATCTGCCACACCATGAC 59 NA Rattus norvegicus 81 Inpp5j ENSRNOG00000019361 ENSRNOT00000026293 2 1 1 80 14 83731927 83732060 ATATCTACCAGGTGACCTTCAG 59 83731868 83731887 GGTGGTGGCTATAGTAACCC 60 NA Rattus norvegicus 81 Emc10 ENSRNOG00000019532 ENSRNOT00000026445 1 1 1 145 1 100498354 100499927 TTTGAGATTGGTGATGGCG 59 100497610 100497628 TAGAGGCCATTGACAGCAG 60 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 1 2 2 80 8 44063522 44063540 ACCTTCCCACAGAACAAGG 60 44063584 44064416 TGAATGTGACCAGTCCCTG 59 NA Rattus norvegicus 81 Zfp207 ENSRNOG00000000236 ENSRNOT00000000253 3 1 1 80 10 67773585 67774180 TATCACTGGAAGAAAGAAGGG 57 67774220 67774240 GATTACCAATCGGAGTTTGTC 57 NA Rattus norvegicus 81 AABR07002241.1 ENSRNOG00000015707 ENSRNOT00000021046 1 1 1 80 1 69514823 69521269 TCTGCTACTGATATGGATCAGTG 60 69521307 69521327 TTTCTGAATGCATTTGTCCCG 60 NA Rattus norvegicus 81 Capza1 ENSRNOG00000013538 ENSRNOT00000056015 1 1 1 80 2 207322417 207322438 CATTTGCCCAGTATAACATGGA 59 207321635 207322380 CATGCTCTGTAATTAAGACCTGG 59 NA Rattus norvegicus 81 Shroom4 ENSRNOG00000002959 ENSRNOT00000003971 1 1 1 80 X 16756030 16756050 GAATTTCCTGTGGACAAGTGG 60 16733313 16755991 CTTAGAATGAGCCATTTCCCTC 59 NA Rattus norvegicus 81 Dusp27 ENSRNOG00000003722 ENSRNOT00000004965 2 1 1 80 13 84306056 84312198 CCTATAGAGGGAAAGTCCTGG 59 84305996 84306014 AGATCATCAGGTAGGCGAC 59 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 3 2 2 80 2 206591827 206591847 TCAGAAAGGATCGATTGACCA 59 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985,ENSRNOT00000074889 3 3 3 80 14 5937923 5938129 GAGCAGCTGTACTATGTTACAG 59 5938167 5938188 GGAATTCTTGATTCCATCAGGA 58 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 3 1 1 60 2 208225780 208225801 TACATGCGAATCTACAAGAAGG 58 208225741 208225760 TTTGAACAGTGCTCATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164 ENSRNOG00000000304 ENSRNOT00000000334 2 1 1 80 20 46253234 46254471 GCCATGAAGCAAATAAGACCT 59 46254511 46254531 CAGAACAGGAGTCAGTACTGG 60 NA Rattus norvegicus 81 RGD1561875 ENSRNOG00000047992 ENSRNOT00000050291 1 1 1 60 2 235951140 235951160 TTGTAGACATCAAGGGAATGG 58 235951100 235951118 CCGTGGTAACACTTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj10 ENSRNOG00000007705 ENSRNOT00000010146 3 1 1 111 13 90751618 90751637 CACTTACTGGGCCTTCCTC 60 90751712 90751730 GAGCTGTGCAATGAGAAGC 60 NA Rattus norvegicus 81 Zc3h12d ENSRNOG00000016041 ENSRNOT00000065646 1 1 1 80 1 1942808 1955927 ATGTGGCTATGAGTCATGGA 59 1955970 1955988 CTCTGTCCCTGAACCAGTC 59 NA Rattus norvegicus 81 Pnck ENSRNOG00000058317 ENSRNOT00000090795 3 1 1 80 X 157153459 157153550 TACAGCATCTCTGGATCTCTG 59 157153590 157153610 AATTCTTCTGGATCTGCTCAC 58 NA Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 2 1 1 80 7 139050713 139050731 TTGGAACCTGATTCTGCTG 58 139049633 139050150 GTGGTGTTGTAGTAACTGGA 57 NA Rattus norvegicus 81 Dctn6 ENSRNOG00000013254 ENSRNOT00000017756 3 1 1 80 16 61800745 61807505 ATGTAACCATAGGTCCTAGGAC 59 61807545 61807564 CTTCGCCGATAATGATTGGG 59 NA Rattus norvegicus 81 Map3k3 ENSRNOG00000061424 ENSRNOT00000088656 2 1 1 80 10 94311663 94314482 GAATAATGAGCTCTCCATCCTG 59 94314523 94314541 ATACTCGCGCTTCTATCCA 58 NA Rattus norvegicus 81 Zdhhc5 ENSRNOG00000006832 ENSRNOT00000009708 3 1 1 80 3 72091803 72092215 ATTACTGACACCCAAAGACG 58 72091742 72091760 GCTGAGCCTATACTCTTGG 57 NA Rattus norvegicus 81 Cst3 ENSRNOG00000005195 ENSRNOT00000007175 3 1 1 82 3 143220859 143220879 CCGAACTACATGTACCAAGTC 59 143219982 143220815 AGAGTGCCTTCCTCATCAG 59 NA Rattus norvegicus 81 Xylb ENSRNOG00000014168 ENSRNOT00000019106 2 1 1 86 8 128069211 128069674 ATAACATGGAGGTCTCGGC 59 128069724 128069742 CTGCATGAATCCTCTTGGC 59 NA Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 3 1 1 80 7 81448602 81448620 AACCAGCCTCTTGTCTCAG 59 81437412 81448562 CGGGATGTTTGATTTAGTACCTG 60 NA Rattus norvegicus 81 C2cd4d ENSRNOG00000020832 ENSRNOT00000028263 1 1 1 76 2 195604410 195604429 ACCCAATCTTCAACGAAGAC 58 195604468 195604486 CTTGGCCCTTAGACTACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562485 ENSRNOG00000028847 ENSRNOT00000040332 2 1 1 60 X 96459936 96459958 CAACTAAGAAGACACATCCAGAG 59 96459898 96459917 ACATTCTTTCCTCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk5l ENSRNOG00000046267 ENSRNOT00000073513 1 1 1 84 1 99363047 99363069 AGGTGGCTATGTATCACTATGAC 60 99363113 99371058 TTATGCGAGGGAGAAGTGC 60 NA Rattus norvegicus 81 Il18r1 ENSRNOG00000015027 ENSRNOT00000020194 3 1 1 80 9 47198026 47200453 CACGTTGCTGTATAAGAACTG 57 47200493 47200513 TAACCTTCATCTCCAAACTCG 58 NA Rattus norvegicus 81 Casp3 ENSRNOG00000010475 ENSRNOT00000014095 2 1 1 80 16 48848307 48848986 ACTCTTCATCATTCAGGCCT 59 48848246 48848265 GCCATATCATCGTCAGTTCC 59 NA Rattus norvegicus 81 Nt5c3b ENSRNOG00000016475 ENSRNOT00000080006 1 1 1 80 10 88350859 88354770 ATTGTCGCAAAGAGCTCAC 59 88350797 88350815 GCTTCTCTTTGATGGTCCG 59 NA Rattus norvegicus 81 Serpini2 ENSRNOG00000009903 ENSRNOT00000013452 2 1 1 81 2 173652224 173652242 TATGTCTCCAGAGCCATGC 59 173649645 173652179 TGTTTATGCCTGTGGATGC 59 NA Rattus norvegicus 81 Akr7a3 ENSRNOG00000017899 ENSRNOT00000024160 3 1 1 85 5 157809364 157809383 CTATGTCTCCTGGGAAGTGG 59 157809431 157809661 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 AABR07007399.1 ENSRNOG00000049010 ENSRNOT00000048860 1 1 1 60 2 12312043 12312061 CCAAACTCAGATGTCTGGC 59 12312001 12312019 TGGCTTCGAATCTTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr50 ENSRNOG00000015432 ENSRNOT00000020691 2 1 1 60 1 168014290 168014313 CTAATTTCTATCTGCTGGTTCCTC 59 168014253 168014272 TTGGTTCTGACTCCGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364989 ENSRNOG00000037452 ENSRNOT00000056688 3 1 1 82 X 159097020 159097039 CATCTTCGATCAGCTTCCTG 59 159097084 159099634 TCCACTCGGACTTAAGCTC 59 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025343 2 1 2 87 8 128842014 128842032 AGTACAGCATCTGCAAGAG 57 128842081 128846959 CTTCTCAATCTGGTCTTCTGG 58 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172,ENSRNOT00000082356 1 2 2 80 8 128588743 128588846 CGCATAAGGACTATGTCAAGG 59 128588888 128588906 ATATCTGTCTGTCCAGCCC 59 NA Rattus norvegicus 81 AABR07041141.1 ENSRNOG00000061620 ENSRNOT00000080863 3 1 1 60 X 120521845 120521863 GGTAACGCAGTTTGTCGAG 59 120521803 120521824 TTTAACCAGCTGAATTGAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt13 ENSRNOG00000008000 ENSRNOT00000011459 2 1 1 93 3 81850253 81852160 TCTAGGCAAAGATGTCTCTGTC 60 81852214 81852232 GTTGATCTTGTGCTTGGCC 60 NA Rattus norvegicus 81 Myh10 ENSRNOG00000002886 ENSRNOT00000065895 1 1 1 80 10 55352461 55352481 AGGATAACTTTCAGGAGACCA 58 55352521 55352720 CGACTTTAAGCATTGAGAGGA 58 NA Rattus norvegicus 81 LOC100361934 ENSRNOG00000034182 ENSRNOT00000045705 2 1 1 60 X 42329200 42329218 CAAGTATAAGCCTGCACCC 58 42329158 42329178 GTCATACTCCACAGAGTCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 2 1 1 80 2 210888869 210889322 AGTATGACGGCAACAATTCC 59 210889362 210889383 CATCTTTCCTCATGTTGAGGTC 59 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 3 2 2 80 3 80573114 80573132 CTCTGTACATTGTGCACCC 59 80573173 80573348 GTCCAAACTTGAAACTGATGAG 58 NA Rattus norvegicus 81 LOC100910070 ENSRNOG00000018534 ENSRNOT00000025068 2 1 1 80 9 44531130 44531821 CCTGAGTTACTGTGGAGTCC 60 44531069 44531088 ATGGTGGGTTGGTATCTCAG 59 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 2 2 2 81 3 147109080 147109099 GCAGAAGGAGGTTTGTATCC 58 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Ccdc43 ENSRNOG00000002748 ENSRNOT00000003685 3 1 1 89 10 90648906 90650194 GACGAAGAGGATGAAGCAG 58 90646751 90646769 ATTGGTGTTTCGGAACAGG 58 NA Rattus norvegicus 81 Iscu ENSRNOG00000000701 ENSRNOT00000000890 3 1 1 121 12 48625883 48627154 TACCACAAGAAGGTTGTGG 57 48625780 48625798 AGTTTCATGACGTCACCAC 58 NA Rattus norvegicus 81 Aga ENSRNOG00000000108 ENSRNOT00000000120 3 1 1 82 16 41226899 41226922 TAATCCATAAGACGGGACATACTG 60 41225574 41226858 TGAGTCTCCTACACGACCA 60 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 3 2 2 81 8 128661864 128662076 TAAATGCCAGATGGATCACAC 59 128661803 128661821 GAATTCCACTCGACCATGG 58 NA Rattus norvegicus 81 LOC100363125 ENSRNOG00000021470 ENSRNOT00000036543 2 1 1 60 X 13992122 13992143 CAGTTAACAAAGTAGAACGCCT 59 13992164 13992182 GAGGAGTTAGGGCATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt2 ENSRNOG00000046569 ENSRNOT00000065084 1 1 1 60 X 21944973 21944993 AGGGTCAGCATAATCAAATCC 58 21944933 21944957 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata1 ENSRNOG00000047663 ENSRNOT00000075082 1 1 1 80 X 15279211 15279231 AATGCTTGTGGCTTGTATCAC 60 15279272 15280323 CTTGCTGACAATCATTCGCT 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 2 4 5 82 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175938 89176831 TCGAGGTTCCCTTTCTTCC 59 NA Rattus norvegicus 81 Ttc21a ENSRNOG00000034089 ENSRNOT00000043831 1 1 1 80 8 128654968 128655616 TGCAGTACAACAAGTCTTGC 59 128655659 128655677 CTGCGTCCTTGTATGACTG 58 NA Rattus norvegicus 81 Shox2 ENSRNOG00000012478 ENSRNOT00000016843 2 1 1 80 2 164121010 164121030 GTTTGAAGCTTGTAGAGTTGC 58 164119306 164120969 ACGTTGCAATGACTATCCTG 58 NA Rattus norvegicus 81 Sppl3 ENSRNOG00000001178 ENSRNOT00000001562 2 1 1 80 12 47290307 47291186 CCTCAGAATAAGATTTCCTTCGG 59 47290249 47290267 AAGCATGACTGACAGGGAG 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 3 2 2 80 8 118827255 118827276 TAAAGATGAACGAGCTCAAGGT 60 118827313 118830159 CGAGAGGAACATTCAATCATGAG 60 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000055245,ENSRNOT00000080305 3 2 2 80 2 266402502 266414903 CTTCATTGTTAGTCAGGTGACAG 60 266414943 266414961 CCAGTGAAGAAAGCACTGC 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087782 3 1 3 60 20 5231170 5231189 TGCCTGACAAACACTTTACC 59 5231129 5231150 GCAGGATGAATAGTAGAAACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038,ENSRNOT00000082267 3 3 3 80 3 176479379 176479834 ACAGGACGAGAATAATGTTTGC 59 176479874 176479893 CAGATCCAGATGCCATAGGT 59 NA Rattus norvegicus 81 RGD1564173 ENSRNOG00000047496 ENSRNOT00000056621 2 1 1 60 X 142345048 142345066 GAGGAAGTATGAAGCCCTG 57 142345089 142345108 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911393 ENSRNOG00000050465 ENSRNOT00000073677 2 1 1 60 X 119532668 119532687 CCTAACAGAAGACTGGTCCC 60 119532627 119532647 GCTGATAATGCTGAGACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000080583 1 1 2 60 20 5241393 5241411 GGACACAGAAATGGCTTGG 59 5241351 5241371 AAGCATGTTTCCCATAAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000080583 3 1 2 60 20 5241391 5241410 GACACAGAAATGGCTTGGAG 59 5241350 5241370 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf11a ENSRNOG00000015615 ENSRNOT00000021129 2 1 1 80 13 25804232 25805123 GCGAACCAGGAAAGTACCT 60 25805166 25805185 AGTATTCATCTGGGCCACAG 60 NA Rattus norvegicus 81 Olr1584 ENSRNOG00000003498 ENSRNOT00000004643 3 1 1 82 13 92103265 92103283 TGGTTCAGTCAGATTCGGG 59 92103327 92122915 GCTGACATACCAGATTTCCAG 59 NA Rattus norvegicus 81 Wfdc6b ENSRNOG00000031823 ENSRNOT00000048654 3 1 1 87 3 161077090 161078031 GGAAACACAGTGTTCATATCAG 58 161078077 161078097 AGCAGCTTACAATAGACACTG 58 NA Rattus norvegicus 81 Slc5a1 ENSRNOG00000017775 ENSRNOT00000024165 3 1 1 80 14 82929269 82929290 GTAATTTACACAGACACCTTGC 58 82927965 82929229 TACTTCTCGGAAAGCAAACC 58 NA Rattus norvegicus 81 Pes1 ENSRNOG00000004515 ENSRNOT00000005996 2 1 1 80 14 84225991 84226012 GAAGGAAGGAGATTACATTCCC 58 84226053 84226472 TCTTCCAAGTTTCCTGGGT 59 NA Rattus norvegicus 81 Eif2d ENSRNOG00000004910 ENSRNOT00000006768 2 1 1 80 13 47937912 47937931 TCCCATCCTGATCTTCTACC 58 47937974 47938485 CAGCATCAAATCTGCTCCC 59 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 1 2 2 80 3 72450761 72450912 AGATGTTCTTTGTGATCAGCC 59 72450953 72450972 TTGAGAAGAGGAGGATCAGG 58 NA Rattus norvegicus 81 Tpst2 ENSRNOG00000000664 ENSRNOT00000000831 3 1 1 82 12 50348847 50348865 GATCCGTACGCAAATCCAC 59 50346626 50348802 TAGTCTCCTTTCAAGACCCG 59 NA Rattus norvegicus 81 Cep112 ENSRNOG00000024557 ENSRNOT00000037067 2 1 1 80 10 96854224 96871612 GTGACATGAAAGAGCAGATGG 59 96871654 96871672 ACTCCTTGGACTGCTTCTC 59 NA Rattus norvegicus 81 LOC689065 ENSRNOG00000036641 ENSRNOT00000054848 1 1 1 107 1 219744617 219745331 ACAATACCAACAGCAGGTG 58 219744528 219744546 CTGTTGGTGTCCAACAAGG 59 NA Rattus norvegicus 81 Otol1 ENSRNOG00000021186 ENSRNOT00000035765 3 1 1 98 2 166857158 166862198 GACTGGACAACAAGGTCCT 59 166862260 166862278 TCTCCTTTCTGGCCTTTGG 60 NA Rattus norvegicus 81 Olr144 ENSRNOG00000016979 ENSRNOT00000022773 1 1 1 60 1 169247650 169247668 TCCTCCAATGCTCAATCCT 58 169247608 169247626 CAGCCTCCTACGAATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhdds ENSRNOG00000014665 ENSRNOT00000020051 3 1 1 80 5 152223244 152225659 TTCAATAAGCTTGCTGAGACTC 59 152223185 152223205 CTCAATGCTGAACGCATAGAC 60 NA Rattus norvegicus 81 Socs3 ENSRNOG00000002946 ENSRNOT00000003940 2 1 1 60 10 106975444 106975462 ACCCTCCAGCATCTTTGTC 60 106975402 106975422 TCACTTTCTCATAGGAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909677 ENSRNOG00000038396 ENSRNOT00000058473 3 1 1 60 X 45615520 45615538 AAGCACTGGGAAACTTGGA 60 45615561 45615580 GTTGGTTGGTTTGCATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012054.1 ENSRNOG00000049530 ENSRNOT00000074187 2 1 1 76 2 184230683 184230701 TTCATCCATTCACCACAGC 58 184230741 184230759 CACATTCCTTGGGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Has2 ENSRNOG00000004854 ENSRNOT00000006517 1 1 1 80 7 96442344 96453041 CGTGGATTATGTACAGGTGTG 59 96442284 96442306 TCTTCTAAGACCTTCACCATCTC 59 NA Rattus norvegicus 81 Bche ENSRNOG00000009826 ENSRNOT00000013279 2 1 1 90 2 171121780 171121798 AAACTCTAAACTCCGGGCT 59 171104581 171121730 CTCCCTTTCATCAATATCTCCTG 59 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 2 2 2 80 2 28798503 28798524 GAGATACCTCTGAAATCGAAGG 58 28794472 28798465 ATATTATCACTGAGTCACCCAC 58 NA Rattus norvegicus 81 Cdkn2aipnl ENSRNOG00000005024 ENSRNOT00000006708 3 1 1 85 10 37422886 37424949 GGTTGCAGTTACAATAAAGACC 58 37424995 37425013 CTTGTAAACTGTGGCAGGT 58 NA Rattus norvegicus 81 Olr1067 ENSRNOG00000049897 ENSRNOT00000049954 3 1 1 60 7 9393216 9393235 ATTCTGCTGGGATTCTGGAC 60 9393175 9393196 GCAAGAACAGTAAGAACAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000080541 2 1 2 81 14 85311577 85312277 AGAAGTCTTGAGGAGTGGC 59 85312322 85312340 TGCAGATGTCGTAGACCAG 59 NA Rattus norvegicus 81 Glipr1l1 ENSRNOG00000026634 ENSRNOT00000039475 3 1 1 80 7 54837647 54853783 CATTATACACAGGTAGTCTGGG 58 54837588 54837608 CGAATATCCTGTGAGATGAGG 58 NA Rattus norvegicus 81 Stx17 ENSRNOG00000005801 ENSRNOT00000007641 3 1 1 80 5 63912835 63921017 TGTCCCTCCTAGTAAATTCTCAG 59 63921056 63921075 CTTCAACATTCACAGCAGCA 60 NA Rattus norvegicus 81 Taf13 ENSRNOG00000020315 ENSRNOT00000027530 2 1 1 80 2 211360902 211366160 TCTCTAAAGAACTGCGCTG 58 211366201 211366222 CTTCGAGAATATCCACTGACTC 58 NA Rattus norvegicus 81 RGD1564836 ENSRNOG00000026969 ENSRNOT00000038940 3 1 1 60 X 33349290 33349311 GCAGAAAGTTACCACAACTCAG 60 33349251 33349269 CTCCTCCAGTTTCTTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnc2 ENSRNOG00000015155 ENSRNOT00000020348 2 1 1 80 3 161244678 161244789 GATGATCGCTGAGTTCAAGG 59 161244617 161244635 GTACCCAGCTCTTTAACGC 59 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236 3 1 2 72 8 117783317 117783335 AATACTGCTGCTCTGACGT 59 117783371 117789846 AATCTGGACTCTGGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Usp27x ENSRNOG00000002844 ENSRNOT00000003800 2 1 1 60 X 15989864 15989883 CGTACATTTCCTTCCCTCTG 58 15989906 15989924 GTCTCTTTACTCGACGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ino80e ENSRNOG00000019960 ENSRNOT00000027033 1 1 1 80 1 198297710 198297888 AGTTCCTCATTTACGAACACG 59 198297650 198297668 TGTCTCGGGAAACCTTCAG 59 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 1 1 1 80 16 70689754 70693177 CTATCTGTAGACAAACGGTAACTC 59 70689697 70689717 GACGCAATCTTACAACATCCT 59 NA Rattus norvegicus 81 AABR07030603.1 ENSRNOG00000050188 ENSRNOT00000074809 2 1 1 60 10 95434667 95434686 GACAATGGATGAAGTGCGAG 59 95434626 95434644 GATCTTCTTGTTGGTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo17 ENSRNOG00000019942 ENSRNOT00000027006 2 1 1 81 1 86916685 86917427 TACATAGCTGACTGGTGGG 59 86917471 86917490 TTTCATGTTCGTCCAGTAGG 58 NA Rattus norvegicus 81 Mettl21cl1 ENSRNOG00000022762 ENSRNOT00000039313 1 1 1 81 9 51009218 51009238 TTTGCTGGTCATGAGATTCAG 59 51009281 51009992 AACATAGAACAAGGGCCGA 59 NA Rattus norvegicus 81 Fli1 ENSRNOG00000008904 ENSRNOT00000068037 2 1 1 80 8 33572978 33581619 GTTACCTCAGGGAAAGTTCAC 59 33572918 33572938 CTTCCTTGACATTCAGTCGTG 59 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 1 1 2 68 10 62053947 62106111 ATTTCTGGAGGACACAGGG 59 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515,ENSRNOT00000078891,ENSRNOT00000041655 2 3 3 80 8 96116016 96116037 TTGTGGGCTCTATTCCTAAGAG 59 96113271 96115976 CATCTGTGAGACCCTCTGTC 60 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 3 2 2 80 5 157445310 157446779 CATCAGTCAGGACCTCCTG 59 157460991 157461010 GTCACATGACAAACGAGGAC 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000077878 1 2 3 63 7 66717511 66717529 GCCTTGTCACTAGAATGCA 58 66727008 66727026 TTATTCCCGATTCAGCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Prc1 ENSRNOG00000013057 ENSRNOT00000017532 3 1 1 80 1 142104001 142104021 AGTATGTTACAGAGCAGTGGG 60 142104060 142104268 GTCTCTTGTTCTTTAGTTGCCT 59 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 2 1 1 77 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482773 35484851 TAGAGCATGAGAGCTTAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Exosc7 ENSRNOG00000060337 ENSRNOT00000084725 3 1 1 80 8 132210935 132219199 TTCTTTGTTGACTGTTCAGCC 59 132219241 132219259 ATTTGCAATCTCTGTGCCG 59 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171,ENSRNOT00000083387 1 2 2 80 9 1545312 1545332 CTCCACCTGAGTCTAGTTGAC 60 1545368 1564770 CTGATAGTTACTAGAAATCAGAGCG 59 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680 3 1 2 99 12 52454501 52454519 TCTGGCCCAGATGATTGAG 59 52454582 52456682 ACCTGTGACAAACAACCCA 60 NA Rattus norvegicus 81 Ipo11 ENSRNOG00000039717 ENSRNOT00000072212 1 1 1 80 2 38013430 38013450 CGAGTCTTACTACAGAATGCC 58 38007016 38013393 CTGATCCATCTCCTGATTAAACTC 59 NA Rattus norvegicus 81 Cmtm6 ENSRNOG00000010951 ENSRNOT00000014585 2 1 1 97 8 122797239 122804782 ATTGCTGCAATTGTGTTTGG 59 122804842 122804860 TTTCTAAGAGGGCTCTCCC 58 NA Rattus norvegicus 81 Slc30a5 ENSRNOG00000018746 ENSRNOT00000025506 2 1 1 80 2 30816650 30816670 ATTGTAGCAGGGACAATTCAC 59 30816456 30816610 AAGTATTCCTGTAACCTGCTG 58 NA Rattus norvegicus 81 Mblac1 ENSRNOG00000001357 ENSRNOT00000001831 2 1 1 60 12 19336256 19336274 CGGAGATGTGACTCTGGTG 60 19336295 19336316 CCCTAGGTTCCCAATATGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912399 ENSRNOG00000050275 ENSRNOT00000065473 2 1 1 80 2 43938679 43939322 CGCCTGAGGTACTAAGAGG 59 43938617 43938636 AGGCCATTTCTATAATGGCG 58 NA Rattus norvegicus 81 Nupr1l ENSRNOG00000000917 ENSRNOT00000001218 2 1 1 60 12 30303829 30303847 CTACGCACCAACTACACAG 58 30303787 30303805 TGAGCAGTATCTGTGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn4 ENSRNOG00000001476 ENSRNOT00000002003 2 1 1 60 12 24761793 24761811 GATTATGGTGCCTGTGTCC 58 24761835 24761853 CAGAGGGTTGTAGAAGTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069,ENSRNOT00000012258 3 2 2 81 5 154222068 154222514 AAAGCAGACTGAAAGGTGAC 59 154222006 154222027 CATTTCTAGATTGAGGGTCTGG 58 NA InUTR Rattus norvegicus 81 Mmab ENSRNOG00000049426 ENSRNOT00000072511 3 1 1 88 12 47927275 47927293 TCACGGGAGAAAGAAGACC 59 47927345 47927897 CATGGCAAACCCAATAGCC 60 NA Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000074998 2 1 2 88 5 154266106 154266125 TTACAGAGACAGAGGCTGAG 59 154266176 154266410 GAAAGACAGGCCGTATCAG 58 NA InUTR Rattus norvegicus 81 LOC100911649 ENSRNOG00000022798 ENSRNOT00000029573 1 1 1 80 16 12977331 12977351 CTGCATTTCTGTCCACATACC 59 12977391 12978047 TGAAGTGTGAATACCTCAGGA 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 3 2 4 81 8 39182117 39184017 TTCCGGCTTTCTAAGGGTG 60 39182054 39182072 TGCTCACGATATCGCTGAG 60 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023,ENSRNOT00000067486 1 2 2 80 16 50390321 50390339 TCCATTCACAATCGACCCT 59 50388779 50390278 AGCGTATAACCTGAGATCGT 58 NA Rattus norvegicus 81 Kif15 ENSRNOG00000060356 ENSRNOT00000089278 3 1 1 80 8 132057730 132062797 GCCTACCAGGTCTTATCTAGAG 59 132062835 132062856 ATGAGACCTGGAAGATTCTCTG 59 NA Rattus norvegicus 81 Mir6329 ENSRNOG00000047361 ENSRNOT00000071369 1 1 1 60 8 56629658 56629676 GTTTGCAATGTGACTCAGC 58 56629616 56629634 AGAGTGACTCAGCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr49 ENSRNOG00000015444 ENSRNOT00000020699 2 1 1 60 1 168028472 168028491 TCTCCTATGTCCACTTCCTG 58 168028431 168028452 ATCTTGACACTGTAGAGAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000089721,ENSRNOT00000091105,ENSRNOT00000077205,ENSRNOT00000077561 3 4 8 60 20 4363855 4363873 TAACAGGCTTGGGAAGGAG 59 4363896 4363915 GGAACCCTTACGGTAGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7g ENSRNOG00000050242 ENSRNOT00000072553 3 1 1 60 8 114874472 114874491 AGTTTGTACAGTTTGAGGGT 57 114874513 114874532 GTGGCCTGTACAGTTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sass6 ENSRNOG00000015211 ENSRNOT00000067324 1 1 1 80 2 219643453 219647013 CCTTGCAGACACAAGTTCAG 60 219647054 219647074 GGATATTTCGTTGATGGAGGG 59 NA Rattus norvegicus 81 Izumo1 ENSRNOG00000024678 ENSRNOT00000033278 2 1 1 80 1 101607171 101607522 TTACAGTTTCTACAGGGTTTGG 58 101607562 101607581 ATCGTCTTGGTCAGGTAAGG 59 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 1 2 2 80 2 45216115 45229981 CAATGTCTGGTCAGTGAAGG 59 45230023 45230042 TGTGAAGGAGTCTTCTGAGG 59 NA InUTR Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 3 2 2 80 2 45192571 45192589 TGTTTGTGACCGTTGAGTC 58 45192633 45206818 CAGAATTCACCCACACCTG 59 NA InUTR Rattus norvegicus 81 Lsm1 ENSRNOG00000015375 ENSRNOT00000020721 1 1 1 80 16 71051106 71052472 TCAATTTGCTAACCTAGTGCTC 59 71051047 71051066 ATCCCTCGAGGAATATCACC 59 NA Rattus norvegicus 81 Larp6 ENSRNOG00000012438 ENSRNOT00000017147 3 1 1 80 8 65625257 65625275 TTTCTGCTCAAGCATGTGC 60 65625317 65630883 GTGTTTCACCTTCTTGAAGGA 59 NA Rattus norvegicus 81 Twf2 ENSRNOG00000048915 ENSRNOT00000074683 3 1 1 89 8 114906780 114906798 AGAAGCACCTGTCATCCTG 59 114906848 114906982 CAGTCTTCACCTCATTGATTCG 60 NA Rattus norvegicus 81 RGD1305420 ENSRNOG00000009492 ENSRNOT00000012602 1 1 1 80 5 61992860 61994374 TTCAGGAGGTGCTAGTCAG 58 61992798 61992816 GACAGCATAGCCTCAATGG 58 NA Rattus norvegicus 81 Olr352 ENSRNOG00000054590 ENSRNOT00000087890 3 1 1 60 1 230011501 230011519 AGCCTCTACGTTATGCCAC 60 230011540 230011561 CAGACAATAACTAGACCCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx29 ENSRNOG00000010369 ENSRNOT00000013854 2 1 1 80 2 44824321 44824720 TATCTCGGGTGGAAGAAAGC 60 44824761 44824781 TCTGTTGAGGAAGTTCCTCTG 60 NA Rattus norvegicus 81 Slc30a7 ENSRNOG00000013912 ENSRNOT00000019172 1 1 1 80 2 218937574 218937592 TACTGCCATATTGGCTGGA 59 218934777 218937535 CTAACATACCCATAAGAGAAAGCG 60 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 1 1 1 70 1 220323978 220324239 TTCAATCGAATCAGCCAGG 58 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Gzma ENSRNOG00000010603 ENSRNOT00000014134 1 1 1 80 2 44973981 44981379 CTAATTCCTGAAGGTGGCTG 58 44973920 44973940 AAGTAGAACCATGTATGGCCT 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000087753,ENSRNOT00000051290 2 3 3 80 8 127233205 127234467 GCCAAGGACAGTGTTACAG 59 127234663 127234681 CTTCAGCTTGGAATCGCTG 59 NA Rattus norvegicus 81 Adrm1 ENSRNOG00000055984 ENSRNOT00000091941 2 1 1 86 3 175548726 175548744 TCGTGTACATCCAGCAGAC 60 175548792 175549429 TAATCAAGTCATCCTCCACGG 60 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595,ENSRNOT00000073847 3 2 2 80 2 49105211 49109251 GAGAAATGACACAGGCACC 59 49105149 49105167 ATTGCAGAAGTGGATGAGC 58 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548 1 1 2 80 20 4487971 4488090 TCCCTTTCTCAGGTTCTTCC 59 4487910 4487929 TGCATTACGATATGGTCCCT 59 NA Rattus norvegicus 81 Cnksr1 ENSRNOG00000022838 ENSRNOT00000031225 3 1 1 80 5 152452034 152452184 GTGGACAGACTCTACCTCC 59 152451972 152451992 GCTGTTTCTTCTGGAAGAGTG 59 NA Rattus norvegicus 81 C4a ENSRNOG00000000443 ENSRNOT00000086027 1 1 1 80 20 4496872 4497549 ACCTTAAAGATCCTTCGTACCT 59 4496813 4496831 GACCGTCACTTCTATCCGA 59 NA Rattus norvegicus 81 Trak1 ENSRNOG00000019262 ENSRNOT00000026106 2 1 1 80 8 130062887 130062906 GAAAGAGTTGGCCAGATGAC 59 130062949 130074570 CAAATCCCGCTCTTTCTCC 59 NA Rattus norvegicus 81 Gpsm3 ENSRNOG00000000441 ENSRNOT00000000510 2 1 1 83 20 4355578 4355815 AAGATGGTGAGCAGAGTCTC 59 4355861 4355879 GAGGTGCAGATCTCCAAGG 60 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 2 1 1 90 2 52171512 52171533 ACTTACTTCTCTATCGGTTTCC 57 52171321 52171461 TTTCCTCCGCCAATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pltp ENSRNOG00000016488 ENSRNOT00000022594 1 1 1 80 3 161319180 161319201 TTAAAGTGTCCAATGTCTCCTG 58 161317754 161319142 TATACATCCTCCTGAAGGTTCC 59 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326,ENSRNOT00000089491 3 2 2 60 8 93494323 93494344 AGAAGTGGATGCATAACATCAG 59 93494361 93494383 CTGTAATGATACCCTTCCATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnn3 ENSRNOG00000011559 ENSRNOT00000015579 2 1 1 80 2 225005342 225028166 GAGGTCAAGAACAAGATCGC 59 225028208 225028227 GCCTGTCACCTCTTCTATCC 60 NA Rattus norvegicus 81 Trim71 ENSRNOG00000030098 ENSRNOT00000047198 1 1 1 110 8 122556268 122566995 CCATTCAGCTGAGCATTGAG 59 122556177 122556195 GAGCTTTCTTGTGTCTCGC 59 NA Rattus norvegicus 81 Shb ENSRNOG00000011503 ENSRNOT00000015338 3 1 1 80 5 61037264 61076947 TCAGAAAGACAAGGTGACCA 59 61037203 61037222 TTTCCTGCTTTGCTCTTGAG 59 NA Rattus norvegicus 81 Neo1 ENSRNOG00000006490 ENSRNOT00000009496 2 1 1 80 8 63690910 63690930 TCTCACAGTCAATGGTACAGG 60 63689914 63690871 ACACGAGATTCATCTAGGTCAC 60 NA Rattus norvegicus 81 Rasef ENSRNOG00000024190 ENSRNOT00000058893 2 1 1 80 5 90466637 90466658 GGGAATACAATTTCTAGCAGCA 59 90466698 90469483 AGAATGGGATGACCTATCGT 58 NA Rattus norvegicus 81 C2cd4b ENSRNOG00000009106 ENSRNOT00000012048 3 1 1 102 8 73593648 73593666 GAAGGAGTCGCTCTTCCTC 60 73593732 73593750 GAGCTCAGAATCTGAGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 3 1 1 63 16 75120348 75120368 TTGTAGTTGAACTGCCATCAG 59 75118126 75119965 CCTCCTGGAAATGACTGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07045621.1 ENSRNOG00000049150 ENSRNOT00000073994 1 1 1 60 20 53776450 53776469 CCTCAAGTGTACAAGTGGGA 59 53776409 53776430 GTTTGTTTAACTTCTGCTGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659,ENSRNOT00000015879 1 2 2 80 16 67484484 67485322 GTGGTCTACGTGAATGGAG 58 67485366 67485384 TTTCTGCCATCCTCTACCA 58 NA Rattus norvegicus 81 Olr1704 ENSRNOG00000048262 ENSRNOT00000073732 2 1 1 60 20 1012240 1012260 CTGAAGCACCTTTCCATTCTG 60 1012279 1012300 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1709 ENSRNOG00000050354 ENSRNOT00000044130 1 1 1 60 20 1185478 1185496 ATGTAGCTGTTTGCCTTCC 58 1185520 1185538 CACCTACACTTTCTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam206a ENSRNOG00000010532 ENSRNOT00000014053 3 1 1 81 5 73556309 73556328 TTTCTAACAGAGCTTGCACC 59 73556367 73556510 GACCTCTAATACAGCTAGATATGG 58 NA Rattus norvegicus 81 Defb10 ENSRNOG00000038148 ENSRNOT00000058059 1 1 1 80 16 75198326 75208182 TATGACACTCCAGTTGTTGG 58 75198265 75198283 GAACCCTTCAAAGAGTCGG 58 NA Rattus norvegicus 81 LOC100910944 ENSRNOG00000019823 ENSRNOT00000026856 2 1 1 83 3 151688511 151688529 AAGATGGGCTTTGTCATGG 58 151688576 151689612 CATTCCGATCCTGAGACAG 57 NA Rattus norvegicus 81 LOC100361664 ENSRNOG00000001220 ENSRNOT00000001635 2 1 1 60 20 11626614 11626632 CCTCCTGTCAGTCATCTGG 59 11626572 11626590 ATAGGTTTGCAGACCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 2 1 1 77 16 75227604 75241243 GTTGCTGGAATTCTAGGACC 58 75227546 75227566 ATTGAGACAGAACCCTTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07072805.1 ENSRNOG00000047265 ENSRNOT00000071389 3 1 1 60 20 999249 999270 GTTATTCATGGCTTCTTTGGTG 58 999289 999311 CCCATATGATACCAAGATGAGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 3 1 1 80 3 91100382 91122610 AGATGAACAAGGATTGGATGG 58 91100322 91100340 CAGCAGGAACATAAGCAGG 59 NA Rattus norvegicus 81 Fam166a ENSRNOG00000010019 ENSRNOT00000013335 1 1 1 80 3 2439679 2439697 CTTCAGCAAATCCAAGCCA 59 2439738 2439857 GGTTTCAGATTGGTATAGTGGG 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000058030 3 1 2 64 16 75599458 75599479 GGATCCATTACCTTCTCTTCTC 58 75589653 75599434 TTTGCTAAAGGCAGAAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Invs ENSRNOG00000008632 ENSRNOT00000011622 1 1 1 80 5 64175143 64175981 GATCTACGGTTGTTCTCAGG 58 64176023 64176042 GAACTGAGATGAAGCACAGG 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000091208 2 1 2 93 3 156775222 156775240 GAACAGTGAAGCATGGGAG 59 156774313 156775165 GTCTGTATCGAGCTGACGT 59 NA DesignNoJunction Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 3 1 2 97 3 156775224 156775242 GAGAACAGTGAAGCATGGG 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Rapgef4 ENSRNOG00000001516 ENSRNOT00000010630 1 1 1 80 3 58709059 58802594 GCACTATGGGAGAAATACCGA 60 58802635 58802654 ATTGTTAGAGCCCGTTTCCA 60 NA Rattus norvegicus 81 AABR07050407.1 ENSRNOG00000025261 ENSRNOT00000045406 2 1 1 100 5 164033209 164059613 GGATGCAGGGTTTCTTAACC 59 164059675 164059694 TACATCCATGTACAGTGCCC 60 NA InUTR Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 3 2 2 62 5 78262702 78262721 AGCTCGATGACATTGAGGAG 60 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 2 2 2 84 3 162368310 162371015 CTCTTTGCGAAGTCTCACC 59 162371063 162371081 CTGTGCTGTACTGTGTCTG 58 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634,ENSRNOT00000046115 3 2 2 80 5 162246457 162246475 AACCTGGACTCTTTGAAGG 57 162246519 162247055 GAGTTTGCACCTACTGGAG 58 NA Rattus norvegicus 81 Srsf10 ENSRNOG00000007992 ENSRNOT00000064925 3 1 1 80 5 154212744 154212766 TATGAAAGGAGGAGATCAAGGAG 59 154212804 154213153 AGTCGGTCTACTGTTTCTAGG 59 NA Rattus norvegicus 81 Upf3a ENSRNOG00000017397 ENSRNOT00000066521 1 1 1 80 16 81524623 81524642 GCTCCATTCCAGAAGATTGC 59 81524685 81524819 ATACTCTGGGTCGTCTTCG 59 NA Rattus norvegicus 81 Syf2 ENSRNOG00000060597 ENSRNOT00000091494 3 1 1 91 5 153269938 153272650 TCTGAAGCGGAATGAAGCT 59 153272705 153272723 TCTTGGCTTCCCAGTTAGC 60 NA Rattus norvegicus 81 Rrbp1 ENSRNOG00000005958 ENSRNOT00000055602 3 1 1 80 3 138061781 138061799 AGTGTGGAGGAAGAAGAGC 59 138061628 138061739 CACTGTAAACCGTGACTTCTG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392,ENSRNOT00000057740 3 2 4 82 16 81627234 81627256 ATCAGAGAAGACTCAGAAGTCAC 60 81627294 81627460 CTCCATTTCTTGTAGGTCTTGTC 59 NA Rattus norvegicus 81 Adrb3 ENSRNOG00000012674 ENSRNOT00000016907 3 1 1 160 16 69005100 69005118 TCAACCCGCTCATCTACTG 59 69005242 69005654 GCCATCAAACCTGTTGAGC 60 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 3 1 1 63 3 176441401 176441421 CTTTGTGGAAAGAATCCAGGC 60 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 2 2 2 90 3 176042860 176043910 TGGACTACGTTCCTCTTCG 59 176043964 176043982 AGAGGATGGGATTGATGGC 59 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 1 1 1 83 16 75666711 75668089 GGTCCAAAGAAACTCAGGG 58 75666646 75666664 ATGAAGAGCCTACAGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Wfdc5 ENSRNOG00000013760 ENSRNOT00000018386 1 1 1 80 3 160569109 160569128 AAACAGTGTCCCTCTTCCTG 60 160568957 160569067 GCCCAGCTTTACAAAGACTC 59 NA Rattus norvegicus 81 Slmo2 ENSRNOG00000046644 ENSRNOT00000075573 3 1 1 81 3 172570793 172570813 CCATTGTGAAGTCTGTAAGTG 57 172569544 172569732 CCCATAAATCCATCATGCAC 57 NA Rattus norvegicus 81 LOC499843 ENSRNOG00000032177 ENSRNOT00000040741 3 1 1 80 3 90721217 90723087 GTGTAGAGGTTGACAAACCAC 59 90721157 90721178 ACTCATATCTGGCTCTTGTCAG 60 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 1 2 2 80 3 161021665 161024019 CACCCAAATTCTGAGCTTCAG 60 161024061 161024079 GACACCAGAATGCATGGTC 59 NA InUTR Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280,ENSRNOT00000091265 3 2 2 80 3 80855012 80855309 CTGTGGACTGGAGTGAGTC 59 80854950 80854969 CGACATAGCAGAAATCTCCG 59 NA Rattus norvegicus 81 Lamp1 ENSRNOG00000019629 ENSRNOT00000026580 3 1 1 85 16 81691005 81691108 TTCCTGATGCCATAGAGCC 59 81690938 81690956 GCACTTGTATGAGTTGCCG 60 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 2 2 2 80 16 71253380 71253399 CTTCGGCACAAACAATTTGC 60 71253439 71254569 TTGGCAATGACTTCATCATCTG 59 NA Rattus norvegicus 81 Prr5l ENSRNOG00000004666 ENSRNOT00000006291 1 1 1 80 3 91310420 91316913 TTTATCCGGTTCAGGGACAG 60 91310359 91310377 TCACCTTCAGCAAGACCAG 60 NA Rattus norvegicus 81 Il36b ENSRNOG00000043323 ENSRNOT00000067207 2 1 1 80 3 1367406 1367426 GGAATCAAAGGCAGAAGTCTC 59 1366496 1367367 GATGTCTACATCCTTAAGCTGC 59 NA Rattus norvegicus 81 Kcnb1 ENSRNOG00000046949 ENSRNOT00000074023 3 1 1 97 3 163935118 163935136 GAGTTTGACAACACGTGCT 59 163853543 163935057 ATGATGGCCAGGATCTTGG 60 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000058072,ENSRNOT00000089265 3 2 2 80 16 74913974 74915848 CATCGAACTGATTATCACAGGG 59 74915888 74915907 ATGCCATTTGTCCTTGTGAG 59 NA Rattus norvegicus 81 Defb39 ENSRNOG00000034275 ENSRNOT00000040406 3 1 1 81 16 75042633 75046166 CAGATCAACTCAGTGTCTGG 58 75046210 75046228 AATATGGGCATCGGATGGT 59 NA Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 2 1 1 60 16 58791175 58791193 ACATAGCATGTCACCACAG 58 58791213 58791235 TCATCTTTCTCCATCCTTACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83d ENSRNOG00000015794 ENSRNOT00000021308 3 1 1 111 3 155269748 155269766 TGTCGAGGCTCATTTCCAG 60 155269839 155281688 CATTACCACAGCAATCACCTC 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699 3 1 2 81 2 196494760 196494779 CAGATGCTCCATGTCTTCTG 59 196494820 196495005 GTTCATCTTCTACCAGCTTTCC 59 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 1 3 3 139 5 171571048 171616778 CTTGTGAACACTCTTGCCC 59 171616881 171616899 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 2 2 2 82 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395975 257395996 GATGTCAGTGACTGACATAGGT 60 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 1 3 5 92 X 22286012 22286031 CTCTATGAGGTGCCAGATCC 60 22286086 22288508 TTTGGTGACCACAAGGAGG 60 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847 2 1 2 81 2 56123074 56123092 ACATCTCAGCCAACAACAG 58 56121600 56123029 TGGACCTTCTCATGTCCAG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 2 2 2 80 2 143926240 143926722 TGTGTTTGATGACACTTTGC 58 143926179 143926200 ATTACTACGGTTAAGGTTCCTG 58 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 3 2 2 82 X 156326262 156326280 CTCTTGAAGTTCATCCGGC 59 156326324 156326427 TCATTCATCTTGGTAGCTGGA 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 1 3 3 82 2 216500163 216500181 TACCAGACGAGGATGAGGA 59 216494933 216500119 TTTGTTCATTCTCTGTCGGTC 59 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 1 2 2 97 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549981 34549999 AATCGGAAGCTGTAGACCC 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176 3 1 5 121 X 26444634 26444652 CATTCTTCCTGAGCTGCCT 60 26448509 26450396 TTTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456 1 1 2 80 2 30363117 30363138 AAACCTATCTGATCTGCTTTCC 58 30363178 30363407 ACTTGGCTTTCATTCTCCTG 58 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007 3 1 2 125 8 47260904 47261434 GAGAGCTGTGAACATTGTAGG 59 47259964 47259984 GTAACTTTCCTCCACCTTCTG 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000064593 2 1 6 80 1 76470299 76470878 GAGTACTCTAACTTCAAGCCTG 58 76463702 76463722 GAAGCAAACATATAGGTGGGT 58 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165 3 1 2 80 5 28092436 28092454 GCTTATCGGAGTTTGAGCT 58 28063538 28092392 ACATGACCAGCTGAATCAC 58 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000085527 2 1 2 87 5 136683691 136690060 CCAGAACAGAATGGTGCTG 59 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000024018 3 1 2 80 1 219174118 219174136 ATGCTGATGGGTATCAACG 58 219174177 219176181 GGACATTAGTACCTTAGGTCTG 58 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 2 2 2 81 17 9552700 9554383 GGATCACTTCAGGTTCAATCG 59 9552639 9552657 CATGGCGATGTAGTCTGTG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000068553 2 1 6 80 17 84174981 84175001 CCATTTCTGATCCTCTTGAGC 59 84171280 84174941 TTGGCTCTTTATACTGGAACCT 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 1 2 3 80 13 26010247 26010265 ACAATTGTGGTGTAAGCGG 59 26010309 26012968 GTCTGTAAGTGCCTTGCTG 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346 2 1 2 80 1 32233322 32233342 CTGAATCTGATCATCTTCGCC 59 32233384 32233611 AATGTCATCACAGAACCGC 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000083779 3 1 3 80 5 22633502 22633523 TACAATGTGAATGGTCTGAAGG 59 22617550 22633465 CTCTAAAGACTTCACTAGCTCTG 58 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590 3 1 2 81 1 138345434 138472762 CCTATCAGGGTCTACAGTTCG 60 138472804 138472823 AGTTCCAAGATGAGCAGACC 60 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 1 1 1 72 4 145145930 145145948 TCTACAAGATCTGCGCCTG 60 145121717 145121735 TCAGGGAAGATCATGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 1 1 3 115 4 78382321 78383622 ACTATAGTTGAAGGGACTCTGTG 59 78383697 78383715 GTTCCTCAAAGCCATGGTC 59 NA InUTR Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 2 2 2 80 17 39160773 39161327 TGCCAAGAAGGTTAAACATGG 59 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586 3 1 2 95 17 9741299 9741317 TGAGAGTCACGACATGCTG 60 9741375 9741496 TGATTACGGGTCGAGTTGTC 60 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000009802 2 1 2 94 X 39948656 39951444 ACTTTAAAGGCCAGAGAAGG 58 39951501 39951519 ATCTGCTTCCATTGTTGGA 57 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 3 2 3 80 8 90934444 90934464 CAAGAAGGAAAGTACAGCGAC 59 90932338 90934405 TCTTTCCCATTCACATTCAGAC 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000015578 1 2 5 83 7 115823272 115825578 TAGATCAGTGCTGAACAAAGAC 59 115825622 115825640 TCTTCAGGCAGTGATGGTC 59 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 2 2 2 87 9 9142231 9142252 CAGAAGTGTAAATTCGAGAGGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 2 2 3 80 5 48057255 48058371 AAACGTCAGATGTCATTGGTG 59 48057195 48057213 TCCCGAAAGTCTCAACTCC 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000087153 3 1 4 92 1 216566192 216575289 GGAAGACAAGGGAGACCAG 59 216575344 216575363 GCCTCGTATTCCTCTTCCTC 60 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 2 3 3 85 20 9749957 9776141 AGGAAGAAAGGATACAAGACCC 60 9776187 9776205 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000050393 1 1 2 82 1 188503092 188503112 CCATTTCTGGACATGTTCCAG 59 188503155 188510282 GTGAGAGCGTTGATAAAGGC 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882 1 1 2 80 18 31812385 31820030 CGATAATGTTCACCCGTCTC 59 31812324 31812342 TAGTTCTCTGGGATGAGGC 58 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000059895 3 1 2 87 10 18359776 18359797 ATAGAACTTGCAGTTCTCTGGT 60 18250390 18359728 GGGCATACACCTTTGAGGT 60 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846 3 1 2 80 5 24583795 24589345 TTCCAAGGTTACCAGTATGC 58 24583734 24583753 AACCCATTCTTTGGGTAGAG 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 3 2 4 81 6 52667460 52667478 AGATGGGATCGATTTCGCT 59 52667523 52671506 CAGGAGGGATCTTCTTCCA 58 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692 3 1 2 184 17 16242408 16242427 ACATCGACATTTACCACTGC 59 16245931 16249313 CACCACATCTTCAGCACTG 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 2 2 2 80 13 96232928 96233088 GAAGAAGGATTGTGAAGTTGTG 58 96232869 96232889 TCAGCTGCATGTTTAGTAACC 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 91 10 4345459 4345477 TTAAGGACAGCAGGAACCA 59 4345529 4347181 GCAATGGTCTTACCTTCATCTC 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850 1 1 3 80 12 8032859 8032877 CTCAGCTAGCAGGTGTGAG 60 8032921 8085546 AGCAAATCTGTGGAGGAGG 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 3 3 3 80 4 157246377 157246685 ACATTCTTCCCTTTGACCAC 58 157246316 157246336 TGGCATTGATGTAATCAGACC 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000061746 3 1 2 80 6 11058499 11061305 TCACAGTGACGAATACTCCA 59 11058438 11058459 TACTCACTGGATTTAGTAGGGC 59 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 1 2 2 80 1 80710175 80710194 GCATCCTACAGACCATTCCT 59 80708334 80710132 GGTAGAGGAAGATGCCGTC 60 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 3 2 2 82 1 174370117 174372222 TTCTGTCACAATCAAGGTTACC 59 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672 2 1 2 83 6 1657445 1668261 GCAGGAGAAGAACTACCAC 58 1668308 1668326 ATCTCAGAAATGCTGGTGG 58 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 1 1 1 60 15 4130897 4130915 AAAGGCTACCACAACTCCA 59 4131051 4131071 TTCCTTCTTGGCATTCTTACC 58 NA DesignNoJunction Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 3 1 1 133 7 26144352 26144370 TTTAGCTGCTGCCCTAAGG 60 26141368 26141387 ACTGTCGTGTTGAATCAGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 3 1 2 81 11 60536074 60536096 TAATAGCCACTCAGTAGTCATCC 59 60531122 60532593 GATGTCAGATGCTGTTATTAGAGG 59 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000064668 3 1 2 120 6 91557927 91557945 TTTGGTGGACTAAGTGCAG 58 91560444 91561814 ATGACCTGAACATTCTGGG 57 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 3 1 1 63 1 239223092 239223111 TACAAACCACTGTCAAAGCC 59 239209366 239209387 AAGAGTCCTTTACTGTCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000028585 2 1 2 81 1 89391732 89391750 TTACTGCTCTGTGGTCTCG 59 89388043 89391687 AAAGAGCCAATCAAGGACG 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 3 2 2 83 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281196 140281215 CAAGGTCATGACCAGTTCCT 60 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000007069 1 1 2 80 3 51749921 51751038 TAATTCCAGGCCTGAAGACC 60 51751081 51751099 ACACGGTGAGGATCATGAC 60 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 2 2 2 81 2 188750480 188750874 TGCAAACAGATCATTGCCA 58 188751204 188751222 CAACGTACTCAGCTGTGTC 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 2 3 3 80 1 140853798 140853816 TAAGGCTGTACCCTGTCTC 58 140848634 140853754 CAGAGCATCCATGCAACTC 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100 3 1 3 110 1 140846360 140846382 GTATATGAGGAACAAGGAACCAG 59 140845775 140846188 TTGAGTCAACCCATAGCGA 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291 3 1 2 80 4 174755802 174755822 AAAGAGGCTCTTCAGAAACAG 58 174757877 174758797 CTACTTCCTCTTCCTCGCT 58 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 3 1 1 63 18 29587421 29587439 CGAATGTTCAGAGGTGCAG 59 29585977 29585995 CACATTCTTCTCTTGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000006249 2 1 2 88 7 28701786 28711614 AACAAACAGCATCACGGAG 59 28701716 28701734 GGCAAGTTCAGTTTCTCGT 58 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000012634 3 1 2 83 14 85343702 85343720 GCTATACCCAGGCTCAGAG 59 85339630 85343655 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 2 3 4 80 17 43537171 43537190 CTACAAGTGAGCAGTGTGAG 58 43534704 43537130 AACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000078436 1 1 2 80 6 102357138 102357157 TGGCAATGAGACAATAGCCA 60 102356880 102357099 CTACTAGAAACGCAATCCATAGG 59 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000017947 2 1 2 86 16 83019512 83019530 GAGGAAGACGCTCAGATCC 60 83010200 83019464 TTTGCGTGAACTTGAGTTCAG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 1 2 2 80 4 61461002 61463016 CAATTCAGACCAAACCCGA 58 61463057 61463078 TAATCTTCTGCTGATCTAGCTC 57 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000007958 3 1 2 133 7 115968058 115969177 CTTGCTATGGCCTTACGGT 60 115967551 115967963 AAAGGAAACACTATCTCCCGG 60 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 1 2 2 80 1 88038172 88039264 ACACTCAAGACTCTGCTGG 59 88038110 88038130 CTTCGTCTTCTTCAGGTTGTC 59 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 1 2 2 99 6 27155931 27189840 ACCACAATCGGCTATGGTC 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000084505 2 1 2 80 15 39838931 39838950 GAAACTCATGATGAACCTGC 57 39838992 39869934 CCCAGATGAGCCTTAAAGAC 58 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162 1 1 2 80 15 39838931 39838950 GAAACTCATGATGAACCTGC 57 39838992 39847145 GCCACAAACACCTTAAAGAC 58 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000079819 1 1 2 80 6 21087137 21089169 CTAGACAAAGACCAGGACGG 60 21087076 21087095 GCAGTGTAGCTGAGATTTGG 59 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000079819 2 1 2 80 6 21089202 21089220 GACTTTGAGAGCATAGCGG 58 21087127 21089158 GCTAATTAAGCCGTCCTGG 58 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 2 2 2 81 14 7737873 7738588 ATGCCTAAAGCCTGGAGAC 60 7737810 7737828 AATGTCAACTGCAGCATGG 59 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785 2 1 2 80 1 222707135 222707153 TCCAGCCTTACCAAGACTG 59 222686579 222707092 AATCAGATCATGCACTGGGA 59 NA Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368 1 1 2 80 10 63747096 63747115 GCGCCCTGAATATACATGAG 59 63747156 63753445 CTTCCTTCATGTACTCATTTGC 58 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132 1 1 2 80 10 29042159 29042177 GGGATACAAATGCTGCCAC 59 29042218 29042608 TCCTCTGAATTAACACTCTCCT 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 2 3 3 80 7 116196987 116197244 CTTAAAGAGACCTTGAGGCTC 58 116196927 116196946 ATAGTTCTGAAGCACCAGGT 59 NA Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 3 1 1 60 8 19973119 19973141 TATGGATAGTCTACTACTGGCTG 59 19973159 19973179 AGGATGACAAATTGCTACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsacc ENSRNOG00000037552 ENSRNOT00000056898 2 1 1 107 2 187662021 187667211 AAGGAAGAAGCCAAAGAGGA 59 187661933 187661951 GTTCGAGAAAGTAGCTGGC 59 NA Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 1 1 1 80 6 96884103 96884126 CAACTAAGAGAAAGAGAACCAGAG 59 96884164 96891216 GAACATCACCTTTGCTCCTG 59 NA Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 2 1 1 81 6 96884103 96884126 CAACTAAGAGAAAGAGAACCAGAG 59 96884166 96891217 GGAACATCACCTTTGCTCC 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107 3 1 2 80 10 59682169 59682188 AGCTGCCTTATGAAGTGGAG 60 59682230 59683680 ATCCTCACAAAGCTCCTCTG 60 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659 1 1 2 80 6 28747494 28750024 AGATGGCGAAGATTTCCAG 58 28747432 28747452 GATTCTACACCTGTAATGGCT 58 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000068531 2 1 2 80 6 28678396 28679829 AGTGAACCTGAAAGGAGCC 60 28678205 28678224 TCTGCATTGGTTCTTATGGC 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000031770 3 1 3 86 1 193239868 193246177 CAGAATCGTCACTGACACC 58 193239800 193239818 TCTTTGCTTGCCAAGTCTG 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770 3 2 3 89 1 193254248 193255712 AAGAAGGAGAGCTTTGGTG 57 193254177 193254196 GAAAGCAGGAGATATGTGCT 58 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249 3 1 2 80 4 114922709 114922727 AAGTGGAAGAGAAGGCTGG 59 114922768 114924172 TTGAAGGGAAATCTTGTTCTGG 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000087094 2 1 2 81 12 13097497 13100062 TGTGTTTACAAGGAATACAGCC 59 13100103 13100122 GATGTACTCTCCAGGGAACG 60 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 1 1 1 60 1 89132847 89132865 TCCTACCCTTAGGAGTGGT 59 89132637 89132655 CTCTGATTGGCTCCGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 2 2 2 80 10 37071946 37071964 AGGTGTACTGCCATCTTCC 59 37072007 37072419 CACCCAAGTCCGTCTTAGAG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 2 2 6 80 1 262013549 262013568 ACGGATGAGGAATTTGAGGA 59 262012003 262013506 CAGACAAGCCACAATCTCC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000086007 2 1 4 80 20 2059777 2078316 ACTGAGATGGAAACCAGCA 59 2078360 2078378 GCTCCAATGGTGACAAACC 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 2 2 2 80 2 118942522 118942543 TTGATAAGTTCTGCCTTGATGC 59 118942581 118944601 AATGTTTCTCCGTGTTCATCAG 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 3 2 2 121 3 57389794 57389812 AGTACTGGGAGTTGCAGTG 59 57363919 57376267 GATTGTTTCTTCTCTGGTGTCTC 60 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275 2 1 2 87 20 10362822 10364717 CATGAGCAGATCCAATACCG 59 10362754 10362772 AGTTTAGCAGGTCAATGGC 58 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 2 2 2 80 5 139047415 139047434 AAAGGCAGAGGAAGGTACTC 59 139047475 139062468 TTTGATTTGTACCCTCCTTCG 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 3 3 9 103 20 2087659 2087970 GTTCTGAGCACTTGAAAGC 57 2087574 2087592 ATGGTAATCAGGTTGGCTG 58 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489 2 1 2 92 4 176811203 176811759 TAACCATAGCTCACCGTGTC 60 176811130 176811148 TTGGACCAGTATCGCACTC 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000070918,ENSRNOT00000052367,ENSRNOT00000042251 2 4 6 82 6 4315604 4315623 TCATTGAGATTGGAGAACCC 57 4303092 4311874 CTTGTCATCGTACTCCTCTG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000070918,ENSRNOT00000052367 2 2 6 80 6 4307837 4311884 TTCACATTAACAGGCCAACC 59 4307776 4307797 TGAAATGCTGATTACGGTAGAG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230 1 1 6 80 6 4311765 4311888 TGGCTTCACATTAACAGAAGG 59 4307798 4307818 GGAATCGGATGATCTCTAGCA 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230 2 1 6 83 6 4311764 4311887 GGCTTCACATTAACAGAAGGA 58 4307794 4307813 AGAGGGAATCGGATGATCTC 59 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919 3 1 2 90 3 7746888 7752843 CTTTGGCACTGTGACTATCC 59 7746817 7746836 TATCACCTGAGGAGATCTGG 58 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000072033 1 1 2 83 9 10021814 10021832 GCTTACTACGGACAGACCC 60 10021879 10022885 ATTTGCTTCAGTTGCCTGC 60 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558 2 1 2 80 8 64763802 64774605 TTCGTAGATCAATGGGAAAGG 58 64774645 64774665 AAGGCAATCGGACTATAACAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000064715 3 1 2 85 2 188523980 188526427 CCACCTTCGTAAAGAGATCCA 60 188523915 188523933 GCATAGCCTCTGCATACCA 60 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000089006 1 1 2 126 14 79938590 79938608 TATGAACAGGAGGGCAGTG 59 79933544 79938500 TTTGTTCTTCAACGAGCCG 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 1 2 2 80 20 13761045 13761357 TTTACTCAAAGGGCAGCAC 58 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521 3 1 2 80 6 137946272 137946291 CCTGTCATCAACAATGGCTC 59 137946333 137946555 CTTCATGTTGCCATCTACCC 59 NA Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 1 1 1 83 19 25947265 25947283 TAGCGACCATGCAAGAGTC 60 25948668 25948686 ACTCTGCAATATGCTGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264 1 1 2 81 4 79942663 79942681 GCCAGATAATGCCACAGTC 59 79935151 79942618 CAGAGCATGGAGCAAATGG 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000056694 3 1 5 116 12 52397970 52398096 CTTTACTTCGTGTGGGTTGC 60 52398175 52398193 GGTGATGATGGAGCTCTCC 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307 1 1 2 86 6 6637353 6637372 TCATTCCTTCGGATGTTGAC 58 6637418 6638643 TTCCTCGATAACCATATTCCAG 58 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470 1 1 2 80 18 29590862 29590882 TCAGGAAACTTCTTATGACCC 57 29590924 29591620 CTCTTGGCATCTCATGGTG 58 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 1 2 2 80 3 175930607 175930626 ATGATACGACCGATGAGGAC 59 175930669 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000088861 3 1 4 81 7 64825370 64825388 CAGTCGGGAATCCTGAGAG 59 64825546 64829963 TGATTGTTGCCAAGAGGGT 60 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 1 2 2 82 20 9619865 9620240 ACATCAAATGCAGACTCGC 59 9620284 9620304 CATCACAAAGGCAAAGATGAC 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332 3 1 5 81 1 20903358 20909577 AGATACTAGCGAGTTCACATGAG 60 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000042524 2 1 2 80 1 166342560 166351178 TTGTGACAGTGATACTAGTCG 57 166351217 166351238 TTTCGAGCCTCCTTATTTAGAC 58 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 1 1 2 80 1 166344237 166351177 AGAATGACGATAGCTGAGAGTC 60 166351215 166351236 TCGAGCCTCCTTATTTAGACTG 60 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 3 1 2 81 6 93429467 93431202 ACATGTTGGAATGGCAGTG 59 93431246 93431265 AAAGTTGGACGCTTCTTCTC 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000084207 1 1 3 80 4 181120391 181124745 TATGATCAGGTATCAAGATCGGG 59 181124784 181124803 TTGTTCCTTTACTTTGGCCG 59 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000078362 2 1 3 80 20 2095572 2096769 TGGAATGGGAGAATCGGAG 59 2096813 2096831 CAGTGTCACTTGACCACTC 58 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000035590 2 1 4 80 19 41271054 41271669 GTGACATCTCAGTGAGGAG 57 41270992 41271011 CATCCTGTTAGGAGTGATCC 57 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000082191 2 1 2 130 15 57242185 57242314 GAAAGATGGCTGTCTGTCAC 59 57243593 57243611 CATTGCAGCTGATGTACCC 59 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000064637 3 1 2 85 20 12885585 12885605 GAAATACACTGTTCCCTTGTC 57 12882704 12885540 GATCTTCAAACCATCCTTGAC 57 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 2 2 2 86 1 214414238 214414504 GTATGCCAGCATGTCTGAC 59 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902 1 1 3 80 9 65104702 65104720 CTTCATGCTCCACAACCAG 59 65104763 65117397 CAATCGAAGAGAACTCGTGC 59 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 1 2 2 80 17 8516179 8516200 GTAAATTGCTCTATCCAGACCT 58 8511383 8516138 CACAAAGTGAGACTTTGGC 57 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 3 2 3 80 9 10710531 10710552 CAGGGACTTCAACAGATATGTG 59 10707666 10710490 TTGGGTGGGATGATCTTGG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 3 3 5 70 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762934 120762953 AAGTAGTCCGGTATCGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833 3 1 2 80 7 70613192 70613210 ACAGAGGAATCAGTCTCCT 57 70613254 70613508 GTACAGCTTTGTTCCAGGA 57 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000089251 1 1 2 113 5 76728268 76753015 TAGCAGTCGGTTTAAAGCG 58 76717954 76728194 TGTCATTCCCATTAGCATACAC 59 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733 2 1 2 80 1 44019400 44045283 TCAACAGCGAGTTGTATTCG 59 44045326 44045344 TGGCTGCCTTTGTAATCTG 58 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215 2 1 2 80 1 214040419 214048974 TGGAGCCAGGTACATACAG 59 214040357 214040375 TCAAAGAAGTGTTCCGCAG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372 3 1 4 80 X 53505014 53516721 TTCCCTAGTTCAAGAGGACAC 59 53516762 53516781 AACTAAGGACTCCATCGCTC 59 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000087182 3 1 2 88 5 22392771 22392791 CCACTTGGAAGAGATTTGCC 59 22392842 22392860 TTCATTCAGTTCCAGGCGA 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 2 2 2 85 4 113952879 113953038 TGAACTCTGGTGGTTCTGG 59 113952812 113952831 TGAGTTTAGCTCTTCGGTGG 60 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000060020 3 1 2 137 12 19581287 19581305 TTCACTGGATAGACTGCCC 59 19580692 19580842 GCTATTCAGCACCTTGAGG 58 NA InUTR Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282 2 1 2 80 1 224937912 224937932 TTAGCATCTTGTGGCTTAGAC 58 224937970 224938123 GAGATAAACCTTATGCTCTAGCC 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 2 2 3 92 4 150520268 150520286 TTTACGTAGGAGCTGTGGT 58 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 2 2 2 80 9 78919507 78920734 TGTCAGTCCAGATCAAACAG 58 78919446 78919466 TTCTGAGCATAGACACTAACC 57 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000019772 1 1 2 80 9 78919450 78919472 GTATGTGGTTAGTGTCTATGCTC 59 78918564 78919410 CGGTCAATGTTGGTCACTG 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 1 2 2 80 8 97386334 97386357 GAAGGCAGATAAGAATGAAAGGAC 60 97386391 97390662 GAAGCGATCAAGTTACTGATATGG 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064395 3 1 4 84 3 111716587 111720127 CTGCTCTTCAAGAAGGTGGA 60 111720168 111720192 TCCAAGTACTCATCTAGCTTATCAC 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 2 3 4 80 3 111718748 111720134 CTAGGAATGAAGGTGGAAATTCAG 60 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 1 3 4 80 3 111718744 111720126 GCATCTAGGAATGAAGGTGG 58 111720163 111720187 GTACTCATCTAGCTTATCACTACAG 58 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476 1 1 2 84 18 41355436 41355454 AATGATCTGCTCAAGGCAC 58 41334744 41355389 GAATCACTCCCTTCTTGTCC 58 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 1 2 2 80 8 114337595 114337614 TCCAGCTTCTTGGAATTGAG 58 114337657 114341201 TCTGATCCAGAATCCTGCT 58 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 3 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 3 2 2 82 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556154 22557559 ACGAAGTCTTCAATATCCTTGG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909 2 1 2 80 X 104768745 104768765 GATCAAAGAAGCCAAGAACCT 59 104767987 104768703 ATGGGAAGGAGGTATCCCT 59 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 2 1 1 60 13 50740311 50740329 GCAGAGCTCAGGGATACAG 60 50737225 50737245 GTAGAGAAACTGCAGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 1 2 2 80 2 237814842 237814861 CAACGAGATTGGCTTCATCC 59 237830458 237831622 TTGTGCAGTGGAAATACATGAG 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 1 3 3 80 18 31077933 31077953 TTTCAATATCCCTCTCCTGGT 58 31077776 31077893 GATGTTTCATATGTCCAGCAC 58 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349 1 1 2 139 7 134495687 134495705 GTGTCCTTGGAGGAAGGAG 59 134486856 134495584 GAGACCTCCTTACACCTGC 60 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 1 1 1 60 X 93065480 93065499 CCTAAATTGGCAAGAGTCCC 59 93065313 93065331 ATCTGACAGTGCCATAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 1 1 2 108 15 51454619 51454638 TCTAGGCTGTGAACAGGAC 59 51454710 51461139 AGTTCTGTCAGGTTCCGTG 60 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 2 2 4 80 13 76298274 76335763 AGACATCAGTAAAGGCAACTC 58 76335804 76335823 TATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110 3 1 3 81 20 2206407 2207998 AGTAGCCAAGACACCAAGG 59 2205930 2205948 TAACCATGTGAGGGATGGC 60 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 3 2 2 115 7 104525511 104527566 AATTAATAACGTCCCGGCAG 59 104525415 104525433 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000072186 2 1 2 80 1 407556 407575 ATCAGAAACAAACAGCCGAC 59 407615 408801 GCTCCATATCTGTATCATTGGC 59 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000087091 1 1 2 96 14 107795257 107795275 TTGTGAATACAGCCCTCCG 60 107797829 107797852 TCTTGCCAATTCTTTCATCCTG 59 NA Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 1 2 2 142 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000051244 2 1 2 80 12 11712758 11712779 GATTCCATCTTATGCTCTTCAC 57 11711292 11712717 TCCTTGCTGAACCTTTCTG 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 2 3 3 84 7 2907679 2907934 AGAGCGATGAGATGAATGTG 58 2907614 2907632 CCTTGGTCCTTGTTCTTGG 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000018440 2 1 2 82 15 52376430 52376448 GTCGTTGTGAGCCAATCAC 60 52375412 52376387 CACTAGCTTCCTTACACTAGGA 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825 3 1 5 107 5 101639498 101639517 TTGTCACTCTTTCTCCCGAG 60 101639587 101648428 GGGCTAAAGTCTCGGACTC 60 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 1 3 3 80 7 63845458 63845478 GACCCTAGGATTGATGTTCAG 58 63845519 63851799 AACAGTGTTCCCTTCTTAGC 58 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000010419 3 1 2 80 6 25076755 25087252 ACCACCTTCATCAGGTACC 59 25087294 25087314 TATGAAGGAATCAGTGGTTGG 58 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 87 1 24190586 24191685 GCTTTCATGAAACAGAGAAGGA 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 1 2 2 80 13 41720267 41722195 TCATCCCATCATGTATTGCCA 60 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000004520 1 1 2 80 13 41713185 41713204 GTCCTTCAATGTTCCAGGC 59 41711835 41711854 CCTACTTGTCTTGAGGTCCA 59 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533 2 1 4 80 3 112256885 112259838 CCATTGATACAATTGTTCCGG 58 112259880 112259898 CAGTGACTGAATAGGCGTG 58 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000003512 1 1 2 90 X 82723524 82723542 GATGCTACCATTCGCTCCT 60 82705891 82723470 AATCTGTGGCTCGCTACTG 60 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299 1 1 2 106 14 110757983 110758001 CCTTGGTTACTGCATGCTG 59 110755100 110757913 GTTCATCCAGCAGTTTGGT 58 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020204 2 1 7 131 17 57067668 57082576 TTGTTGTTCAAGCTGCCAC 60 57082670 57082689 CTTCTTCTGCTAGTTGCTGG 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754 3 1 2 81 20 18932169 18932187 ACAGACCAGGATCTGAAGG 58 18932229 18937901 TACTTAGCTCTGAAATTGCCAG 59 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009073 1 1 3 124 3 92736841 92736859 ACCATTGAGAAGAGCACCC 60 92712420 92736753 GAGTCTCCATCACTGGTGG 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000008760 3 1 3 83 3 92708105 92721566 AACAGAAAGCAAGGGACAC 58 92708040 92708058 GGAATCTGAGGTCTCCTCG 59 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 3 1 1 89 15 82081293 82081311 ATAACAGACTCTGCCAACC 57 82081221 82081241 GGTTGACAAATGTTGTTACCC 58 NA DesignNoJunction Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000080365 3 1 2 93 18 57143385 57146056 ATTACTACCGCTCAGCTGG 59 57141344 57141362 GTCTTGCTCTTGGTTGCTG 60 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000065483 3 1 3 81 18 57755779 57780268 CACTCATGTGCTAAGGACC 58 57780312 57780331 TCAATGCTGACAGGAATAGC 58 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 1 1 6 92 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972823 36976233 GGGCTAAATGCATCTCCCA 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 2 1 6 93 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972822 36976232 TGGGCTAAATGCATCTCCC 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000088037 1 1 6 109 15 36972745 36972763 GAACTATACCTGGCCCACC 60 36950456 36972672 TGTTGTAACAACCACTGCG 59 NA Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 1 2 2 80 13 90460110 90460129 TTGGCTTATGACGACTTCAG 58 90458701 90460069 TTGATAGCACTGCTTGATGAC 59 NA Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000008150 3 1 2 82 13 90461169 90465657 CTGCCAGTCTTCAATTAGTGG 59 90461107 90461128 CATCCGTCAATACCCATTTCAG 60 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376 2 1 2 151 7 139686344 139702070 CCTATTCTTGAAACCGAGTGG 59 139707077 139707095 AAGATGCCAACTCGTACCA 59 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560 2 1 2 191 1 101049522 101049541 GTATCTGCATTATCGACGGC 59 101047201 101047550 CTTCTGAGGCTGGAGTAAGG 60 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 3 2 2 80 7 23818970 23820424 CTTTCACACGACAAGTGCT 59 23818908 23818927 GGAAGATGCGTAGTTTCAGC 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 3 1 2 80 9 78573993 78575734 CATGAAAGACAACTTCCTCAC 57 78573933 78573952 GCAGCTATGAATACAACCCA 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 3 2 2 80 17 53991496 53991519 GTAGAAGAGTTGAAGTTAACGGAG 59 53991558 54003854 CTAACCAGAGTCCTGCCAC 60 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013297 1 1 2 80 15 89307361 89307380 CCCACCTGTGAATCTTAGAC 58 89306848 89307321 GAAATATCATCTGTGACAGGTG 57 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255 3 1 2 144 15 89288650 89295928 AAGGTGTTGTCTACATCTACTG 58 89288192 89288545 GAAGTTTCAGTGCCTCCTG 59 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382 3 2 3 80 7 107470597 107479317 CACAACTACAACAGGTTTCCAG 60 107479357 107479376 ACAGTACCCAGACACTTCAG 59 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 1 1 2 80 3 48485475 48485494 AACGCTCTGAGAAACATCCA 60 48484955 48485437 CATCTTGTACCAGAAAGTCATTCC 60 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 81 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 78 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 3 2 4 81 5 78371664 78372596 TTCCCAAGGATGAACAGGG 59 78371601 78371619 AAGGTCTTCCTCAGCAGAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389 3 1 2 81 5 102432562 102432580 GAAATGCATGTCTGCACAG 58 102417195 102432518 TTATGTTGGCACTGTGTCTG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000002864 2 1 2 82 9 61000670 61001598 TGGTAGAGGGTATAGAAGTTGAC 59 61000610 61000630 CCCACTGCTCTGATAGATGAG 60 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265 2 1 2 80 1 199687629 199688141 CCTCAGAAGCATCTCCACC 60 199688182 199688203 TAACTCTTCAGCATCCAGATCC 60 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083568 3 1 2 152 10 36291413 36291431 GCTGTATTCAACCTCTGCA 58 36291547 36293507 CACAGGTTACCGAACACTG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 2 2 2 80 16 20801209 20801227 TTCCAAACAGTTGTGCTGG 59 20801040 20801167 GATCTCCATTCCCTGATTGAG 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078991,ENSRNOT00000012622 1 2 3 80 4 99810293 99810312 GAATCTTTGCTCTGATGCCA 59 99809463 99810250 CATAAGCTCGGTGCTTCAC 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000016087 3 1 4 88 4 85597247 85597267 ATAATTTGCATCCTGCTGAGG 59 85597312 85597482 GACCAGGGTAATAAATAGTTGCAG 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000010421 3 1 2 98 5 39618414 39618433 TTTCAGTTCTCAACCCACAG 58 39617743 39618354 AGTATGTTGATCCTCTGGGA 58 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896 3 1 2 83 12 11223690 11223709 CTGAAGACATATCACGCCCT 60 11223750 11224486 GATGATTTCCTTGAAGACTTCCAG 60 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000022445 1 1 2 80 17 53697902 53697922 TGGAGATGAGAAGACACTGAG 59 53694271 53697863 TGGTCTAGTGTTTCACTTTCAG 58 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 1 2 2 80 17 27433732 27433754 GAGATGTGGACATAATGATGAGG 59 27432374 27433698 CAGTCTGGTATAGAATATTGTCCTG 59 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000019511 1 1 2 80 16 2958428 2958446 TACCTCACTGTCAAGAGGG 58 2958489 2984460 GTTACTAGGTTCCTCGTCCT 58 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 2 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000085050 3 1 8 94 20 1959670 1959825 TGAATACGTGGCTTGGAGAG 60 1959595 1959613 CCAGACACAGATGGGTGAG 60 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143 1 2 3 80 3 93690251 93690273 GAAGAAGATAAAGAGTGGGACCT 60 93690191 93690210 TAGCGAATGTTTGTGGCTG 59 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130 1 3 5 104 4 140450527 140450547 ACCAAAGATAGAGGCTATGGA 58 140463480 140464552 TTCAAGCTCCTCTGTGGAG 59 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000085042 3 1 2 81 3 8915077 8919283 ACTCCCTATGGGAAGACAC 58 8915014 8915033 CAGTGTGAATGAAATCCCGT 59 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138 2 1 2 80 5 171268423 171268444 GGAACTCAAGTCTGTTTATGTG 57 171268485 171268504 ACGTTGTACTTGTTGGTGG 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644 1 1 3 98 7 143323593 143324329 AAGAACAAGTACGAGGATGAG 58 143323405 143323423 CACCTTGTTCATGTAGGCC 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 3 3 3 82 11 70356313 70356331 TACCCTAGCTAGCATGGGT 60 70349285 70356268 ATGCTGATCCGAGGTAAAGG 60 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000086495 1 1 3 80 11 70399509 70401369 CCCTCTTACATCATCTTTGCC 59 70399449 70399470 TTCAGCTATCAGGAAGTCAGAG 59 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 2 2 2 80 4 129493037 129493057 GAATCTCTACCTCACTCAGCA 59 129488504 129492995 CCATAAGAGCTGGTGTCCC 60 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 1 2 2 80 18 61700391 61700413 GACTTCCGTAATAAACCCTATCC 59 61697278 61700353 GCCATTATTGATCATGACCGT 59 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 3 2 4 92 15 8920803 8920822 TAGACAAGGATGAGCTCTGC 59 8914486 8920748 TAAAGAAACCCTTGCAGCC 58 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498 3 1 2 113 11 77474833 77474852 AAGAAGAGGAGTTTGTGCTG 58 77465239 77474757 CTGCTTCCACCGTATTTCC 59 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000056047 3 1 2 80 20 27287068 27287087 CCCATTTGATGTAACCCGTC 59 27285642 27287025 GTCTCCCTCATGGTAAGGC 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260 3 1 4 143 1 189328417 189359839 ATTCTCTGCTCAACATTCCCT 60 189359942 189364283 AGGTAGTCCACTGATACTGTG 59 NA Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000009879 3 1 2 165 5 138246014 138246127 AAGGTCAGAGCTGATCAGG 59 138246254 138250950 TGAGAGCATAGATCTCTGCTC 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 1 2 2 80 10 109616705 109616723 CCTCCTTGACCAAGTCCAG 60 109616764 109618492 TTAAAGTACAGGTTCTGTTGCC 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093 1 1 2 80 10 46603496 46605418 GACAGACCTGAAGGGTGAC 60 46602544 46602563 GCTTTGGCTCTTTCTTCCAG 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483 2 1 4 81 12 5575503 5575522 GGAGATCCGAGACATGATCC 60 5574965 5575459 TAGTGCCGGAAACATGGAG 60 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 1 2 2 80 15 18664542 18675303 AATCTATTATTGGTACTGGCGG 58 18664483 18664505 GAGTAACAGAACTGATAGTCCTC 58 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 2 1 1 60 20 2484641 2484659 GCCACCTGAATACTGGGAG 60 2484973 2484991 TGTGATATTCCGTCCCACC 59 NA DesignNoJunction Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 1 1 1 61 2 190073945 190073963 ATGGTCACTACTGAGTGCC 59 190074150 190074169 TCTTTGAACAAGCTTTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 2 2 2 80 5 173288636 173289543 TGCTTCTTCAGAGTTCTGCA 60 173289680 173289699 CAGACTCAGACACCACAGAG 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246 3 2 5 80 X 71310534 71310783 CTTCTGCAAGAAGGAGATCTG 59 71310474 71310492 GCAGAACTCTTGGAAGGAG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 1 4 5 81 X 71311061 71311525 TCCACTGAGAGCATTCCAG 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000068174 3 1 2 81 17 68487271 68489944 TTCCTCTTACCAGAGAAAGGT 58 68489984 68490005 ACTGATGCTTCATTTGGATCTC 59 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 1 2 2 109 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126478 AGCCTTATATCATTTGCCCTG 58 NA InUTR Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973 2 1 2 82 5 48303574 48303592 TGATGGCTCTTGTGGAGAG 59 48303637 48311955 ATACAAGTGACTTGGCTTGG 58 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 3 2 2 80 12 13718146 13718165 GGTCAGGTCATCACTATCGG 60 13718207 13718316 GGATTCCATACCCAGGAAGG 60 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 1 1 2 123 1 29432193 29432211 TGAATCGCTATCTGCTGCT 59 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 2 1 1 60 17 62299592 62299613 AACTGTAATGTGACCATCATGG 59 62298069 62298088 GCATTCTTAGCAAGACTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000089538 1 1 2 80 10 66760887 66760906 TGTGTTGGTAAACTCACTCC 58 66762420 66766219 CAATCCAATGCAGAAGCAG 57 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 1 2 2 80 5 137672722 137672741 ACTGAGGTCCTTCAGAAGAG 59 137672783 137673035 ATCAGAGAAGCCTTTCTGGT 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000044408 3 2 6 80 4 154557437 154557458 CTCATTACCATACATTCCTGGG 58 154557499 154560602 TATCTCAGCGTGGTCTGAG 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000047118 2 2 3 81 16 3568404 3568422 AGCAACACATTGAAGTGCT 58 3568466 3618451 AGTGCATCTACCTCAGTCTG 59 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288 2 1 2 88 20 27954722 27979742 GAAGAGCTGAGCAACATGG 59 27979793 27979812 TTCACGATCTTCTCAGCAGG 60 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000078020 3 1 2 83 3 3399612 3402033 TGGAAGTTAGTACCCGTCC 58 3399547 3399566 CATCAAGTCCTCCAACAACG 59 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000081767 2 1 2 107 1 178157410 178191947 TTCTAACTGGCACTGCCTC 60 178157321 178157343 ACCTTCGTCTATCTCTTGATCTC 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 2 2 3 80 3 113420080 113420205 CCAGAGACAATAATCTTTCAAGGAC 60 113420024 113420043 ATCCGGTATTTGTGGTTCCA 59 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000084640 1 1 2 131 5 117590850 117592020 AAACAAAGTTTCTCCAGAGCC 59 117592112 117592131 GCTTCCGTATAATGATGGCA 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000087506 1 1 4 80 13 78227502 78382240 CCTTATCACAAAGGACTCTGC 59 78227442 78227461 TTGAAGTAATCGTGTGCAGG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 2 2 2 67 12 2580354 2580372 TCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 1 2 3 80 4 33640463 33640481 TCTTCTTCAGAGAATCGCC 57 33640525 33640981 ATTGAGGAATCAGCATCCC 57 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 1 2 2 81 19 52533164 52533183 GAGCCCTGTCTTCTGTAGAG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000080352 3 1 2 80 1 48539560 48543154 AACTTCCCAGATGCTTACCA 59 48539499 48539517 AAATGTCTCCCACAGGCTC 60 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936 1 1 2 80 1 47958603 47958624 GGAACAGACTAAAGACAAACTG 57 47958665 47964639 TTGCCTGTTTGGCTATCAG 58 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 2 3 3 80 11 67251994 67252013 CCAAGAAGGGAGAAAGACTC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000082402 1 1 4 85 6 109673444 109673800 CATTTGTGGAGCGTAGCTG 59 109674102 109674120 TCCACAGCAAACTCAAAGC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972 3 1 4 86 6 109669578 109673380 CTACAAAGGGACAACCCTG 58 109673430 109673448 AAATGGTTCAGGTGAAGGG 58 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599 1 1 4 93 6 109673394 109673412 TGACTCTGAGTGCTATGGT 58 109673476 109673499 ATGAACTTACCTGTGGAGC 57 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000028406 3 1 2 85 1 221298893 221298913 TTCTATACCTATGCCCAGCTG 59 221297895 221298846 CCGAAGATGTCCTTCACGA 60 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 3 2 4 61 5 50232939 50232958 AACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949 2 1 2 60 5 159981520 159981539 GTAGTTTGGTGGGATCTGTC 58 159981479 159981498 AAAGACTCCCAAATTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 3 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981793 CCCACAGAACATAACAAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 2 3 3 80 18 56395287 56395306 AGATCATGAGTCATCTCGGA 58 56395349 56397824 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56394494 56394512 TCATGAGTCATCTCGGACC 59 56394554 56396614 TGATAATGTAGATGGGCCCTC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649 1 1 4 80 8 70183959 70184593 ATATGAAGTTGAGCCCACAG 58 70184636 70184654 AGGTCGTATGGATTCTGGA 58 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 2 2 2 84 12 13430075 13438069 ATATCAAAGGGCCCACTGTC 60 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA InUTR Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 86 8 72622356 72622374 AACACCCTGTCTAATGCCT 59 72480036 72622309 CGTCATGAAAGCTGAATTAAGG 58 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351 1 1 2 80 10 46992250 46992866 AAACTGATGCTCACCCTCC 60 46991221 46991239 TGAACTCATACAGTCGCCG 60 NA Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000037399 3 1 2 81 3 11406999 11407018 ACTGTTCACCTCTAGCAGTG 60 11407061 11407886 CATGCTGTATGACTTGCTGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 1 6 7 87 X 70645330 70646351 CTTTACAGCCATTGTACAGGG 59 70646400 70646418 AATGTAGTGCCCAGACTGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450 3 1 7 123 X 70597270 70600494 TATGAGCAGGTGAATGGCA 59 70600977 70600995 GGTCATCAGGGACATGAGG 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000085599,ENSRNOT00000077790 3 3 4 80 2 57933405 57933423 GGATGTGAAGAGCTACCTG 57 57912984 57933362 AATCCAAGGATTGTACCCAC 58 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000011085 3 1 2 85 5 50068705 50072280 GATCTCTGTGCCAATAGAGGA 59 50068640 50068661 GCAAGCGATATGTTTCAAATCG 59 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 3 2 2 80 10 105319451 105320989 GACTTGTCAAATGTGCTGAG 57 105319390 105319408 TGAACTCGACGTTGTAGTG 58 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 3 2 2 80 1 222862262 222862280 GCCCTATGTACAGTCACTG 57 222862324 222869436 CTCCTGGGATTTCACTTGG 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671 1 1 4 93 15 819768 819786 GTCTACAGTGGGTTACGGG 60 819843 837333 ACTACAATGTGCCAGTCCC 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000006143 3 1 2 80 6 115609366 115609388 GTTGATTCTGGACTCAGAGGT 60 115609306 115609324 GTGACACTGACTTCCTCCT 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 3 2 2 80 X 123495226 123496117 CACCCTAACGTCTATGCAG 58 123496159 123496179 GGAAGACACATCATAGGTTGG 59 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000091681 1 1 3 149 2 196638216 196638310 AAGTAACCAGTTCTCCTAACTG 58 196638420 196641476 TTCCTAAGAGCTCCTGTGG 58 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000088292 2 1 2 82 1 5248351 5250567 TGCTGGTGATAACTCCCTG 59 5250608 5250631 CTGTGTACGGATTATAGTAGAGGT 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 1 2 2 80 9 79988099 79989911 ACTACCTCTACAAGGACCC 57 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 3 4 4 80 2 92587146 92592337 AAGGTCCTCCAGAGAAATGTG 60 92592378 92592397 TCTTTGCAGGTCGTAATGGA 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 2 2 2 80 1 84136753 84136771 GAAGGGAGCTTCAAGTGTG 59 84136604 84136709 ACACTCATCCACATCCTCG 59 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332 2 1 2 80 12 13138669 13138913 ATGTATGCACATTGGAACCC 59 13133195 13133216 ATACTCTATGTCTCTGCCTCTG 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000065632 1 1 3 164 1 260552335 260557891 TTCTAAAGAGCCGCTTGTG 58 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431 3 1 2 110 12 2213722 2213740 CAACCCAGAAGAATGCAGG 59 2213901 2214014 AGGATTGTGAGCACCTCTG 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 1 2 3 80 9 65704155 65704174 ACTCAACATTCACCTTCACC 58 65702277 65704112 ATGGGAAACCAGAGCTAGG 59 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944 2 1 2 100 8 53736723 53736741 AATCTACATCGTCCTCCGG 59 53736805 53737777 TACAGTTGCCCTTGAGTGG 60 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 2 1 2 81 2 248722153 248723256 CTGGTAATAGGTGTGGTAACTG 58 248723295 248723316 CTGAAAGTTCTCCATTCAGACC 59 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 2 2 2 80 7 142109763 142109782 CAAGTGTCTCTTCATAGGCC 58 142109822 142111977 CTAGGAAACAGGTACATTAGCA 58 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000055542 2 1 2 80 4 178389960 178441448 CTCAGGAGTTTGAAAGGATGTC 59 178389901 178389919 TTGTCACCATGGCTACCTC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 2 2 5 81 9 43821828 43821850 GAGACAACTTTCAGTAAAGGACG 60 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292 1 1 3 80 2 154559801 154559822 GTACAGTCTGAAATCTTTCCCT 58 154559860 154561758 TCCAGATATGATAATAGCCCGA 58 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 1 2 3 80 18 63016852 63029314 GTGCGGGACAAATCATCAG 59 63029358 63029376 CTGTCACAAGATCTGCAGC 59 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000013331 3 1 2 81 15 23576509 23576530 TAGCATTTGATGAGCTGAAGAC 59 23572672 23576468 TACTCTGGAAGCACAAGAGG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545 3 2 3 80 12 11624360 11624380 CTCTCACGGATGTGAATACAC 59 11618847 11623968 ATGTGACATTCTCGAAGTTCTC 59 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 2 2 2 98 3 79258840 79259952 AAATCCAAGTTAATCCGAGTGG 59 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 1 2 2 80 7 11306846 11307048 GACCTTATCTTACAGATCAACGG 59 11307087 11307106 CTCTGACTTCTCAATGAGCC 58 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 2 2 2 106 17 76008900 76016082 GTTCTGAGGTCATGATGCTG 59 76016151 76016169 AATATCACAGCTGGCAACC 58 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 3 2 2 80 20 13113954 13114979 AAGATGATTGTCGAGGTCAG 58 13115022 13115040 TGCTTCTTTGGACTTGAGC 58 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 3 4 5 99 19 43234661 43234679 GAGCTGGCTCTTCAAACAG 59 43234739 43237112 CTCTTTCCAATTTATTGCCTCG 58 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450 2 1 2 135 2 198439031 198457796 GTGGACATGTTCCAGTTGG 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000090540 2 1 2 80 2 84522999 84523018 ATTGGATCCAGAATTCTCGG 58 84522076 84522958 ACACTTCCTGAGATAATCGAC 57 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755 3 1 2 96 1 214230385 214230403 CTGAAGAGGAAGACCCGAC 60 214230463 214233893 ATGTGGTACCCAGCATCAC 60 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029 1 1 3 80 4 38241357 38250876 AGAAGTTGAAACACTACGCC 59 38250918 38250937 TCATCTGTATGACGGGTCTC 59 NA Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 3 2 2 80 1 257902411 257912905 AAGATGTTAGAAGAGGCTCG 57 257912947 257912966 TTCAAGCAAATGTTGCAGTC 58 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 1 2 3 81 19 53609229 53612065 CTATGCCAAGCTGCTTCAC 59 53609166 53609185 GTTCAGCAATCCTCCATACG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000081645 3 1 2 80 17 77647643 77647661 CACCGTCAAGTGAAATTGG 57 77645514 77647600 TTTCTGTTGCTTCTCCAGTC 58 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000048900 3 1 2 107 19 43163689 43164288 CCATTGTGCAAGCCTTGAG 60 43164357 43166172 AATCCATTCTCTGCATGTTGG 59 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000083132 3 1 2 80 5 35972268 35973554 TTCTGCAGAAAGGAAGGCA 60 35973596 35973616 ATTAGGATAGCTGGAACAGCA 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 2 2 2 81 14 21998355 21998858 CTGGCACAGAAACATCATCC 59 21997904 21997923 GGCTGTATGCATTCATCCTG 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102 3 1 2 87 5 27313141 27313160 AAGAAACACTTGGAGAGCAC 59 27313209 27386166 CTTCTCGGTACGATCTTGAC 58 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198,ENSRNOT00000012422 1 2 2 72 2 166681794 166681812 GCATCTAAGCTCACTCAGC 58 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198,ENSRNOT00000012422 2 2 2 73 2 166681794 166681812 GCATCTAAGCTCACTCAGC 58 166655586 166655604 CTTCACACGCTTGAAATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 3 2 2 80 7 76136436 76159325 GAGGCGAAGATCTTCATCAC 59 76159366 76159386 CATCAGAGGAAGTCCTTTCAC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000067913 2 1 4 82 7 124230076 124233808 AGGATGAAGAGTGGTCTGC 59 124230012 124230031 TGTTAGGGTGACACCATCAG 60 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428 3 1 2 99 1 199199907 199200932 AACTGGGAGAAACCAAAGC 58 199200995 199201013 ACATACGCTTGAAACGCTC 59 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144 1 1 2 83 3 103753443 103753461 CTTCTCTGGCAACTGTTGC 60 103753508 103806658 AGTTCTGATTCGGGTCCTC 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 2 2 4 120 13 79740183 79744859 CTGGCAAAGAAGTAGACCC 58 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000046229 3 1 3 114 9 81566949 81566967 CACCAGAATGCAAGGAGGA 60 81567045 81628381 GTGTACAGGCTGTACCAGG 60 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 2 2 2 80 11 83990373 83990391 AAGTATTCTGTCGCTGCTG 58 83990433 83991150 ACGGAGACAATCTGATTAGGT 59 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000055103 3 1 2 80 1 188316052 188316071 TCATGGACTTCGTGTTCTCC 60 188319076 188319097 TGCTGATGACTTTCATCCCA 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 1 2 5 85 18 79413266 79413284 TACCCTGGCTAAAGCAGAG 59 79413331 79424851 GTGTGAGTCCTTGTACATGTG 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000018556 1 1 2 87 1 16109251 16109271 CTGAGCAGAATGTCAAATGTG 58 15974752 16100586 CTTAGTCGTACATCTCCTTGG 58 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000042677 2 1 3 80 12 21061500 21061519 ATCACAGGAACAACATGGGA 59 21017205 21061457 TCCAATGCTTAGCTGTGGA 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000004776 1 1 3 84 14 21127747 21127765 TGGATGGAGAATGGCTCTG 59 21103514 21127704 TAATTAGGATCTTCATGGGTAGGC 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000039057 3 1 2 81 2 54813564 54813584 CCACTCATCTGAATCCCTCTC 60 54813346 54813524 TTGGGAAGATTAGAGTGAGTGG 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 1 2 4 120 7 123637577 123637595 CAATGGACTGAAGGCAGTG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692 1 1 2 165 X 71541178 71543908 ACAGGGTTAGCTGAGTTGG 59 71544037 71544834 AGTGAGCAGATCTGTCCAG 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368 1 1 2 80 1 199381339 199382252 TTGCTGGGTGAATTCTGGT 60 199381277 199381298 TTTGAGAGGGTTCTGTATCCAG 60 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000002309 3 1 2 146 5 79235718 79236168 GATCGTCACAATTCAGCGAG 60 79235591 79235609 TTGGTCTTGAAGGCCTCAG 60 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291 2 1 2 80 4 99769646 99769664 GACCACCTGAAGAAGTTGC 59 99769707 99773153 AACTCTTGGCTAGAGACTCC 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449 3 1 3 102 13 47589323 47589341 GAGGCAAATGACACATGGG 59 47589573 47589593 CTTTCTTGGATTCCTCGGTC 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855 2 1 3 83 8 111768498 111770118 TACTATGGATCCAAAGATGATCCTC 60 111768439 111768457 CTGGTTTAGCTGGAAGCCT 60 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121 1 1 2 80 1 92091309 92091329 ACCAGAACTACAACTATGAGC 58 92087489 92091268 AAGTTTCTCTACTTGGGCTG 58 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612 3 1 2 80 1 248308237 248313507 TGAATGCCCAGATGATGGG 60 248308175 248308193 GTTTGGCCATGTAGTTGGC 60 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 1 2 3 68 13 82562071 82562089 CATCTACAATGGCGGTGTG 59 82563169 82563187 TAACCAACCGCAAACACAG 59 NA DesignNoJunction Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048353,ENSRNOT00000012129 3 2 5 115 3 2263966 2263988 GGATGTATAGTGTTGATGGAGTG 59 2264996 2266783 GAAGTTCGAGATGGCTTGC 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000077092,ENSRNOT00000001098,ENSRNOT00000090039 1 4 6 80 20 3429878 3429898 AGTACTGGACATCTTAAGCCG 60 3428149 3429837 TTGTTGTGATTCACCTGGGA 60 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745 1 1 2 131 8 71509764 71533176 GACTATTGCTGGAGTTGCC 59 71509651 71509669 TAGGGTTCCGTAAGTTCGC 60 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 1 2 2 80 10 61706682 61707878 CTCATCCAGATCTTGGACTC 57 61706621 61706642 GCGATAACAGAAATAGAAGTGG 57 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000009241 1 1 2 101 13 48446377 48446395 ATAGTGGACACAGGGACCT 60 48446459 48448794 CACCAAGTCTTCTCCATCCA 60 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000009241 2 1 2 102 13 48446376 48446394 CATAGTGGACACAGGGACC 60 48446459 48448794 CACCAAGTCTTCTCCATCCA 60 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004 2 1 2 90 20 30839341 30840320 TACCTCCCATCCTACAATTGC 60 30839271 30839289 CCATGGAGTAGTCGATCCC 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000010739 2 1 2 89 6 126645255 126645274 GATTTCCAGGAGATGGTGTG 58 126645326 126647032 AGGTAATCTGGTGACTGCC 59 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537 1 1 2 80 18 1203168 1204584 GCAACTGCTATGGAGTTGC 60 1203106 1203126 GCGAATACACTGAACTGTAGC 60 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000072803 1 1 2 80 17 90205182 90217424 CAACGTGCAGATAAATACTGAG 58 90205123 90205141 TCCTCAGGAATCTTACGGT 57 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 3 3 3 86 X 77120037 77135885 GTCCATCACATTAAAGTTTCCC 58 77135932 77135950 TTCTTGGAGGGTCTTTGGA 58 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777 1 1 2 80 18 1285602 1285623 TTTCGGATTCAACTAGTGTTGC 60 1280843 1285564 AACCTTCAATTCTTGACTCTGG 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000017927 1 2 3 80 4 100292170 100292188 AATAGCCCTTTGCATGAGC 59 100292232 100292534 TCGAGTCATCAGGAAGCTG 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000077172 2 1 4 99 7 117711149 117711167 TCGATGAGATGGACCAGAG 58 117710666 117711087 CAGTGAACATCTGTGTAGCC 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000088776 2 1 2 80 3 161417860 161417878 GCAAAGTTGAACTCAGCCT 59 161418171 161418190 TGTGTACACCCACATTTGC 59 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 2 2 2 80 12 17513532 17513550 CCAGACTGTTGACACTCAC 58 17512017 17513490 CTTCTCTGTTTGACTGTCCTG 59 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 2 2 2 89 6 125656209 125656227 TTGCTACAATCTGCAAGGG 58 125652927 125656156 CACATACAGCGGTTATCCC 58 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 2 1 2 80 10 104732211 104732993 AGAGATGGGTCATGGAACTC 59 104732150 104732170 TTGAGAATGAACTCTTGGGTC 58 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000002793 1 1 3 80 14 25796229 25796248 AGTTTCCGACTTGAGTCCAG 60 25796291 25859223 GTGACTGGAGAAGGAGCTG 60 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 2 2 2 80 13 111159904 111159924 AGAATTCTACACAGCCTTCTC 58 111159966 111227053 CGGAACACAATCCTCTTCC 58 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 3 2 2 80 10 47721205 47721223 TGTTACCTCCTTCCTGCTC 59 47721043 47721163 GAAGTCATCTTCTGTGTTGCC 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 1 2 3 80 11 80933953 80967274 CTAATGAACTCTCAGTTAGTCACC 59 80933896 80933918 CCATACAATTAGGATTCCTTCGG 59 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950 3 1 2 87 18 71221116 71221134 ACAACAAGGTTCTGGAGCA 60 71221185 71251381 AGGTCCTGGGCATAATCTG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451 3 1 3 80 9 111173237 111173255 GGTTATTCCTGTGCTGGTC 58 111173299 111176044 CGGTCATGATCTCCAAAGG 58 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021189 1 1 2 80 3 11831594 11831612 GTGAGCCTGAATGAGATGC 59 11830145 11831552 GTGAGTAGAACCTATGAGCAC 58 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000088121 3 1 2 97 1 190229541 190229914 TATGTCCTACTCGTTTGGCT 59 190229968 190229992 GTCCAACATTCCATAGTATTCAGAG 60 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933 2 1 2 80 1 190222035 190222054 ACTCATGTTCTCTTCCATCG 58 190222096 190223305 AGCTGGTACTCCTTTAACCT 58 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 1 2 2 80 3 56063550 56063570 AGGTGCAGAGTTACAATTCAG 58 56063610 56067512 CTGAGCACAGTCCATATTCTG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 2 1 1 69 8 37704183 37704201 TGCAATATGGTACATCGCT 57 37702372 37702393 GTGTCAAGACTCAATAAAGAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 3 2 3 90 12 22750797 22751048 CCATGAAGAAAGATGGACTGG 59 22750727 22750745 ACAGCCAGTCCAATGAGTC 60 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 3 2 2 185 1 56242593 56289144 GTTCTTGAGAGTCGATCAAGAC 59 56289290 56299802 CACCTGGACACATCTTTGC 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 3 3 3 80 20 3731249 3731429 AGTCTATGAAAGGCTCCCTG 59 3731188 3731207 AAATAGCGTCGTCTCTGGAG 60 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 1 2 3 85 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076549 2 1 2 87 2 208557034 208557756 CACCATCAGAACAATCTCCA 58 208556406 208556424 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076549 3 1 2 87 2 208557033 208557756 CACCATCAGAACAATCTCCAC 59 208556406 208556424 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 1 2 2 80 12 23789798 23789816 CAACTAGTGCAGAAAGCCC 59 23789859 23814659 CTCTGTCACGTTCTTCATGG 59 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000083601 1 2 3 157 10 109713438 109713551 GAGATCGAGGTCCAGAAGG 59 109713761 109713779 TTCCCGTGGATGTAGTTCC 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 3 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671839 CCCTTCATACTTTGGTATTCCT 58 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208580954 208583458 ATTCATACCGAGCTCATGC 58 208583500 208583520 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054 3 1 2 90 15 29209015 29209033 TTCAGTGCAAGAGTCAGAC 57 29209084 29209261 CGTTTCTCTAATGATTTCTCCC 57 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949,ENSRNOT00000080562 3 2 5 80 11 81424329 81426407 AAGCGCTAGACATGATTTCTG 59 81424266 81424287 TAGTTTCTTGTACTTGCACCAG 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 3 2 3 80 18 72571604 72593010 CATACCAAGCACTTGCTCTG 59 72593052 72593071 CTGTAAAGGCCTGTTGTGTC 59 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 1 2 2 80 15 57166039 57169057 TTCGTATAGTACAAACAGGCTC 58 57165980 57165998 TCACTAAAGCGCTTTCCTC 58 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 1 2 2 80 2 197988353 197989385 CATCAGATAAGCAAGCACTTCC 60 197988294 197988313 GCCCATCTTCCCTATGAGAG 60 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 2 2 2 81 10 49191267 49191286 CTACGATTCGGAAGATGGGA 59 49188369 49191223 TCTGGTTTCCACGTCTGAG 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155 2 1 2 81 2 208633782 208633800 ACCTGACAAGACCAAAGAG 57 208623052 208633737 ATTCACCTTCCCATGAGTG 57 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 3 2 2 80 3 11257484 11257502 GAAGCGTGTCTTCTTCCTG 59 11257546 11257697 AATCCTCCTAGCCAACCTC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340 1 1 2 80 5 86503226 86503244 AACTCACTGCTGACTCCAC 60 86498549 86503183 CACAGTTCTCAGACTCCTCG 60 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012 2 1 2 80 4 161690842 161690864 ATATCTACACTTGGATCGAGGAC 59 161690901 161692275 TGTGACGAATAGAGTTCTTCCA 59 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008003 3 1 2 82 4 161690878 161690896 TTAAGCACATTGCCAAGCC 59 161691677 161692277 GTTGTGACGAATAGAGTTCTGTG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000037974 1 1 3 80 9 73418547 73418567 GAAACAGTTAATCTGCCACCT 59 73418609 73437253 ACCACTTGTTGCTTCTTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 2 5 9 80 9 81533018 81535392 CCCAGAATCAGGATACAATGTG 59 81535431 81535451 GCCTGATGCACAATAGAATCC 60 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000019265 3 4 9 161 9 81518590 81527536 CGGAAACAAACCAGAAGCT 59 81529665 81532993 CTCTTTAGTAACTCATCAGCTCC 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 3 1 3 81 14 34561648 34562172 GGATACAAGGCAAGAAGCTG 59 34561586 34561604 TCGAAGAGTCTCCGAAGAC 59 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531 1 1 2 80 4 86375700 86375718 CCAAGAAGCGTTCTCATGG 59 86360513 86375656 AAGGAGGCTTGATGACTGG 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000088089 2 1 3 89 6 126110299 126110318 CGTGACTCTGTGTACTACAC 58 126114001 126116798 CTGCATCTTCATATTGTACCAC 57 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 3 2 3 80 6 126103287 126103306 TTCCCTACAGACCTGTTCTC 59 126103346 126105889 GAACATATAGAGTGCACCAAGG 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 3 2 2 85 4 162185000 162189812 AATTCCTCACAGTAAAGTGCG 59 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 3 2 2 85 4 162185000 162228924 AATTCCTCACAGTAAAGTGCG 59 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000080834 2 1 2 80 11 73178005 73178024 GATCATCTCCAAGAGCTGTG 58 73178066 73178484 CTATTTACAGCAGCCACTGG 59 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000075041 1 1 2 136 10 109964974 109964992 GAGAACTTGCAGAAGCTGC 60 109964467 109964572 GACTGAAACCGTGTAGGGT 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000078148 3 1 2 87 2 116402788 116402811 CCATACATATGTGGTATTTGTGGG 60 116401757 116402743 ATGGTCGTTCTCCTGTATGG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000067895 3 1 2 174 4 161652910 161652928 AAGCAAGCCTCAAGTTCTC 58 161652752 161652772 TGAGAGTAAGGAGGACCCA 59 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000084851 3 1 2 85 1 267437789 267438612 GACCTAAAGGAGACCGTGG 60 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000084760 2 1 2 80 1 281828655 281828675 GTCAACACCATTTCAGGTCAC 60 281825477 281828614 TGAACCCATTCTGGTCTGAG 60 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 3 3 3 120 11 73697839 73697860 ACAGTTCCTGTGTATACCAAGG 60 73698331 73704380 TTCTTCTAGCCGGACAAGC 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 2 2 4 82 1 63759680 63842605 CTGTCTTGGACTGACTCTGG 60 63842828 63842846 AATCTGGCTGTGCTCTGAG 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000080829 1 1 2 98 6 126460615 126461725 GATGCCAGATCGTGAATCC 59 126455315 126455334 AATACGCCCTCAATCTTGTC 58 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000091573 3 1 3 92 8 117769893 117769911 GAAATCCAGGACCACTACC 57 117769967 117773137 ACTCCACTTTACAACCTCG 57 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289 3 1 5 80 1 259425090 259429374 TTTGGGAGACCGACTAACC 59 259425028 259425050 CGTCTCCACTTTCTCTAAATCTG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021114 2 1 5 80 1 259446806 259448458 CTGAACAGAGACACTCCTG 57 259446744 259446763 AGAGTTCTGCTGGATTTCAG 58 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273 3 1 2 87 13 50145518 50145537 TATTCAGAAGCAGTTGCGTC 59 50145587 50149551 TTTGACCACTCTGATTGCC 58 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000006802 3 1 2 83 14 86394989 86395007 CTATTTCCACATCGGCGAG 59 86394749 86394943 GTTCGATAGTTGCCGATGAC 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 2 4 4 81 1 250692825 250693532 CAATCAGCAAGTGCTGAAGG 60 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 1 2 2 80 12 23604898 23605367 AAAGGAAGAGCTGGACCTG 59 23604836 23604857 GTTCTGTGGATAAACAGTGGTC 59 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 2 2 2 80 13 51194015 51199862 GAGACACAAAGAAGACCTGGA 60 51193955 51193973 CGGATATAGGAAGCCAGCA 59 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 3 2 2 82 10 88466148 88468271 TGGATGAAGATCTCATCAAAGG 58 88468313 88468332 GTCCAGGTAGTTGATTCCAG 58 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 2 2 2 80 20 32057974 32058875 TACCTGTGGCTAAGCTACC 59 32057912 32057932 GACATCCAGTTCTTTCTGGAG 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356 1 1 3 85 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638216 ACAATCTTTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 1 2 3 80 4 56638595 56638616 GTTTGATATGAATCAAGACGGC 58 56638655 56642823 TCTGGATCATCCAGGTAAGTG 59 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 3 2 2 107 9 100290536 100290944 TCTGAGGATAAGGTGCTGC 59 100291014 100291033 CTTAGGACAATGTTGCAGGG 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000004966 2 1 2 90 10 108630897 108639108 TGGAAAGGGTGCTGTATGAG 60 108639161 108639179 AGGAAAGGTACCTCTCGGA 59 NA InUTR Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000046854 2 1 3 102 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034753 51035431 CATTCTGAGGCTACCTCCC 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000002020 3 1 3 93 12 25447471 25452061 AACATTCAAGGAAGCCATCAC 59 25453985 25454005 TTTCTGAAGGGACATGTTGAG 58 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 1 2 4 80 X 115565309 115582386 TTCTATTGTACTTGCAGGGTC 58 115582428 115582446 CAGAATCTTGGCACTTCCC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459 1 1 2 81 1 114318333 114318351 GAAAGGCTCTTGCATGTGG 60 114318396 114320293 GCAGTGTTTCACCAAAGGT 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 3 2 2 61 2 86474342 86474362 GTTGGAGAATTACAGCAACCT 59 86471481 86471502 CACATTCTTTACATTTGTGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 1 1 2 87 7 130171091 130176453 CGCTAGAGCTAGTCTATCCG 59 130170945 130170963 GAGTGGGAGTCTGGAAAGG 59 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000079745 1 1 2 121 2 123279038 123280054 ACCAGAGATGTTGAATCACC 58 123278936 123278955 ATTTCCCTAAGGTACGTGTG 57 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 1 2 2 65 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 2 1 2 82 4 161728492 161728981 TGCTTTCCCTCAAGGTAGG 59 161729026 161729045 CACAGTACTCTCGGTAGGAG 59 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 2 2 2 80 7 45372137 45372157 ACATTGCCTCTGTTAATCGTG 59 45372193 45379108 GTCTTCTAGAAACTTATCTATGCCG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000072263 2 1 4 80 5 127579910 127579928 CCAGTTCCCTGGAGAACTC 59 127579972 127605499 GCTGGAAACATGTTCCTGG 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000016221 2 1 2 80 10 13967965 13967984 TACAAGTCATTGTCAGTGCC 58 13967287 13967922 GGAGAAAGAAGCCACTGTG 59 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 2 1 1 60 4 98731702 98731722 AAATACTCCAGAGTCACACCA 59 98728686 98728704 CTTTGCTTTGGAGCTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018452,ENSRNOT00000018272 3 2 3 82 1 231398259 231398277 TGTAAGCACTGGAAAGGAC 57 231396277 231398214 ATGAGGATTCTTTGGACTGG 57 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000040306 2 1 2 186 3 104168262 104176576 AAATCTGGAGGACAGGACC 59 104167798 104168113 CATCAGTGTCTCTACAGCTG 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77284303 77290477 ACTACTCCTACTGTAGCACC 58 77284242 77284260 TCTTTGGCTTGTCACTGAC 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 3 3 3 80 X 77284302 77290476 CTACTCCTACTGTAGCACCC 59 77284241 77284260 ATCTTTGGCTTGTCACTGAC 59 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 2 2 2 80 8 119085453 119085472 GTCTTTCTTGGTACAACCGG 59 119085514 119086673 ACCCTTGATGATCTACCTCG 59 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 1 2 2 88 15 103327085 103329323 CTTGATCAGGAGTTTGACGAG 59 103327017 103327035 GACTGCACAAAGCACTCAG 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000043079 1 1 4 80 7 78462384 78482265 CGAAGAAATATCGCTCAGGA 58 78482307 78482326 CACTTACATCACTGTCCGAG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000039984 1 1 4 80 7 78512216 78512234 CTTGTGCAGGAATGTGGAG 59 78512274 78520245 GGACGTAAAGACATTGATGTCAG 60 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 3 2 2 80 3 11708863 11708881 CATGTCCCTGATTCAGCCA 60 11708925 11712686 CACTGTAGAGTCTGCACGA 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 2 2 5 80 6 80235408 80235431 CTTAGAGTCATCTTTAAAGGAGGC 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 2 2 2 80 12 25068420 25068954 TTGTCCTTTGTGAGATTATCGG 59 25068994 25069013 TTACATTGAGGCCAAAGTCC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466 3 1 3 80 5 127625990 127626810 ACAACAAGCTGACATTGGC 59 127625928 127625949 TCTTAGTGAGATAATTGGCAGC 58 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000035323 3 1 2 98 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858664 47861255 TGCTTAAATGCTTCACGACG 60 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633 3 1 2 80 4 181426162 181426180 GGAAGATTCAGAAGGGACG 58 181426223 181426443 TCTTCCTTTAACATGTGCGT 58 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 2 1 2 109 9 105944571 105944590 GTTATAAGGTGCTCAACCGT 58 105945337 105946148 GATGCTGAACTCATTGTTCAG 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004295 2 1 6 80 10 53743005 53743140 TGGATGATCTACACCTACTCG 59 53743180 53743200 CACCTCTGCATTATACACTGG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 1 1 2 80 4 123542967 123542987 TACAATACCATCAACCCAACG 59 123541951 123542684 CACTGCCATTGTCAATTGAG 58 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530 1 1 2 120 15 60014595 60014613 AATGAGTAGGCGAGAAGCC 60 59990365 60011006 AGGAGATCCACCTTTGTCG 59 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530 2 1 2 121 15 60014595 60014613 AATGAGTAGGCGAGAAGCC 60 59990364 60011006 AAGGAGATCCACCTTTGTCG 60 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000085094 2 1 2 160 2 85753555 85753808 GTTCCATCCTGCATTATACTGC 60 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278 3 1 5 83 8 6152358 6152376 AGCAGGAGTTATTTCGGCA 59 6140364 6150136 TGCGGAGAGCTAATTCCTG 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 2 1 3 81 2 261399424 261399443 TTCAGTGCCTAGAAAGCCTC 60 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 3 4 4 81 9 104698717 104718644 CGGTCTTAATTCATGGTGCT 58 104698655 104698678 CTCTTTGACAGAGTAAGTAGACTG 59 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 2 2 2 80 20 32247686 32253324 ACACATAAAGCAGAACGCAC 60 32247625 32247644 TCTCTGAAGCCTTTCAAGGT 59 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 3 1 1 84 10 75201616 75201635 TGTCTCCATCATGAACACCC 60 75191129 75191147 CAGCTGGACAATGGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 1 2 2 81 20 32296563 32296581 TATGAACGCAGGTCAGGTG 60 32294811 32296518 GGGAACAGCAATACCTGGA 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600 3 1 2 82 4 9203446 9203466 ATTCTGAGAACAGAACAGCAC 59 9203506 9215579 GGAGGTAATCTTTAAACTGACCC 59 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000083068 1 1 3 97 5 59502242 59502260 ACGAGCAGCTACAGAAGAC 60 59506527 59508707 TTCTGCTGCCACATAACCA 60 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 3 2 2 91 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187095 184187114 ATATAGTTCTGCACCAGTGC 58 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 2 2 2 80 4 57760338 57762692 GATATACGGACAGGCAATGG 58 57762732 57762753 TCTGTGCTATAGATGTAGCCAG 59 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 3 2 2 80 9 116094552 116094573 ATAGTACTACCCTATCCAACGG 58 116089432 116094512 CAAGTATTGACACGGAACCA 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 3 3 4 80 17 4256823 4270833 GCCTTTGGTGATTTGACCA 59 4270877 4270895 GATGGTTGTCTCCTTGGGT 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 1 2 2 80 19 10879352 10880943 CTTAATCACGATCGCAGCC 59 10879290 10879308 TTCTTATCCAGCTTCCGGC 60 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 3 3 5 81 9 97975855 97989220 ACAACAATCAGTCATGGAAGTC 59 97975795 97975813 GAAGTTAGCCTGTCCCAGG 60 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258 3 1 2 81 7 59928765 59930705 AAACAGCAGGATGTTGATCAG 59 59928704 59928723 TGAAATATCCCAGCTTTGCC 59 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 2 2 2 60 7 144266501 144266519 TGGGAGTCTCATCATTGGC 60 144264438 144264457 ATAGGAGAAGAGTTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 3 2 2 60 7 144266496 144266516 GAGTCTCATCATTGGCTATGC 59 144264435 144264453 CGCATAGGAGAAGAGTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 3 2 2 80 6 101987222 101995073 TGTACAAGAGGTACAAACTGTC 58 101995113 101995132 TGTGGAGCATTTAACAAAGC 57 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000084882 2 1 2 138 1 80339419 80339570 GAAGGGTTACCCTCGATCC 59 80336778 80338367 TAGATGGCAACTTGTGACCT 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 2 2 2 84 5 165924829 165924847 TTCCTCTGTCTCCCTTCCA 60 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 1 2 2 126 16 24978574 24980917 GCCTAAAGGACTGAAAGCA 58 24981006 24982624 CTCCGTCTTCAATCTTTCCT 57 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000091789 1 1 3 80 8 82124453 82124474 AGGAATTATATGCAGATGACCC 58 82124512 82125910 GTTCCATCAGATCAATCATCCT 58 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907 1 1 2 80 14 44689031 44690079 CGAGTTGAACAGATTAAGAGTG 57 44690119 44690138 TTCATTCATAGCTGGAGGTG 57 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 3 2 5 83 11 78309229 78341324 AGACTCAATTTAGTGAGCCAC 58 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139 3 1 2 80 18 17324793 17326200 GATGACACTGAGTCTGGCA 59 17326243 17326262 ATCCTCAGCATAGCTCAGAC 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959 1 1 3 147 1 32573328 32573346 GAGAAGATCACGCATACCG 58 32574330 32576093 CGACAAATACTCTTTCTGACGA 59 NA InUTR Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599 2 1 2 84 13 53021767 53021785 TGAGATCAAGGGCCATGAC 60 53021833 53022863 CACTGTCAGGTCACTGGAG 60 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 3 2 2 80 4 115879227 115879247 GGGAAGAAATCAGTGAGTGAC 59 115879286 115880729 GGTGAGTTCAAACATCTTTCCA 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000047964 2 1 8 80 1 226468243 226480826 CTCAACTTGTCCAAGTTGCC 60 226480869 226480887 AGACTCATCATGTGGCGTC 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000081601 1 1 2 81 14 66925896 66926776 GTTGTTCAGCTAAAGAGCAG 57 66922464 66922482 AAGTCTGCAAAGCAGTCTC 58 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054 2 1 2 106 18 24743886 24744529 CACTACAACCAGCTCTTTGG 59 24744598 24744616 TTGGGAGAAAGCAAGGGAG 60 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 2 2 2 83 6 93549993 93551766 TGAAACCTGAAGAGGTTACCT 59 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000086588 2 1 2 84 2 199840502 199841153 GGACACTAATATTTCATGTGACCC 60 199841194 199841214 CTTAATGGACAGCGCATAGAG 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088168 1 1 6 80 1 41554562 41561428 TTCTCGGAAAGGAATCAAGG 58 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088168 2 1 6 80 1 41554560 41561428 ATTTCTCGGAAAGGAATCAAGG 59 41561469 41561487 ATCGACTTGACGTAGCCAG 60 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000056172 1 1 3 88 2 200713564 200713662 ACTACATCTCAGATGACACCC 59 200713496 200713514 ACTGGAATCAAGGTGGAGG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000029865 2 1 5 81 13 55114472 55120562 TATCTTCCAGGTGCCAACC 59 55114409 55114429 CTATTTCTGTGCTTGTGGTGG 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000026748 1 1 3 80 1 199541086 199541104 ATGGGACCAAGGTTACCTG 59 199541147 199541252 TCTTGGAGAACTGGTTCTGG 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000001373 1 1 2 96 12 37451364 37451383 AACAAGCCCTTCTATGTGGT 59 37451436 37451723 CTGCCTTGTACTTAAACTTATCTGG 60 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 2 1 1 144 1 78808853 78808871 GATCTGGCTCCTATGGACG 59 78810333 78810351 GGAGCTGAGAAGGATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 1 2 3 150 10 70566473 70566491 AAATCTTGACCTGGGTCCC 59 70579746 70580554 GAAGGACTGTCCTACTGCC 60 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286,ENSRNOT00000041442 3 3 3 60 6 100011200 100011219 ATAACGATGACATCGAGGTG 58 100002741 100002759 TCCAGTGCATTATGGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 1 4 4 80 20 4583703 4583721 GGAAGAGGAGGAAGAGGAG 58 4583765 4583867 CTAGAGCCACTCCTGTCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000077770 2 1 2 80 6 135680861 135680879 GTCTGACATGCTTCAGAGC 59 135680920 135690466 TTAGGGAGGAGAAATTCTGAGG 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000077539 3 1 3 82 4 164439014 164439039 CTTCAGGACCACATTATTGACAG 60 164438953 164438972 GTGTTGTCAATCCATGACCA 59 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000079599 3 1 2 81 7 114573923 114589820 GTTGGGCTAAAGAATATGACAG 57 114573863 114573882 GTGTGATTCAAGTTTGGGTC 57 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000091697 1 1 5 97 3 8594948 8594966 AGAATGACAAGCTACGCCA 59 8595377 8596386 ATATGCTATGCCGTCGAGG 60 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 1 1 2 80 9 15626013 15626033 TTCAAGATCTACGACAAGGAC 58 15625118 15625973 AATTGTTCTACTGACCTCCAC 58 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000064255 1 1 2 80 16 8760627 8772196 GCTCTTTAAGTTCGAGGGAC 58 8772238 8772257 TGGAATTCTTTCACCCACTG 58 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888 2 1 3 82 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492978 134494132 TCACCTTGAAACTGCTTGTG 59 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584 1 1 2 80 2 124205976 124340800 TAGACAAGATCATAGCAGTCTG 57 124340840 124340859 TCTTCATAATGCAGTCAGCT 57 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 3 2 2 99 9 16610695 16611161 CATGGACCCAGAACATGTG 59 16610614 16610633 AGCATCTGATATCTCCCGAG 59 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000057502 2 1 2 88 11 89254503 89254523 GACAGTGAAAGCAACTGACTC 60 89253810 89254453 TTGCTAATGGCAGGGTCTC 60 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940 3 1 3 81 4 27585341 27592363 GCATCACCTGAGTATCGGA 59 27592408 27592426 GGTCCGTAGGGTTACTGAG 59 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686 1 1 2 80 7 130014667 130014685 CAAAGGAAAGGCACCTGAG 59 130014723 130016593 GGATCTGAATTTCATCCATAGTCTC 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 1 3 3 87 7 120659554 120659572 AGAAGTACGAGCGGATCAG 59 120659003 120659506 AGGTAAGTTGAGAACTCAGAGG 59 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000019358 2 1 2 80 1 57753901 57753921 CTACTCCTCATTTAGCAACGG 59 57753958 57755157 TCTCTGTCACTATAGTACCTACTG 58 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 2 2 2 106 19 10131817 10211830 CACCAAAGATGATTTCAACGAG 58 10131506 10131524 ACTTGTGACAGAGCTTCTG 57 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 1 2 2 60 10 103409100 103409119 TATGGATGAACCAGCCTCAG 59 103411696 103411714 CTGACCATTGTAGCCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000085235 3 1 2 87 5 135257450 135257469 AATCTCTTGGACAGTCTGCA 59 135197073 135234802 TTACTCGTCCGACAGAAGC 60 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524 2 1 3 80 19 62066517 62066537 TCCAAATGGAGAACTTCACTC 58 62064493 62064533 GAGTTCAGTTGTTCTTTCAGG 57 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209 2 1 2 80 2 12111952 12111971 GAATATGAGCGATGAGGAGC 58 12112013 12112800 GGCAGTGTAGCTTCATTCTC 59 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 3 2 2 80 5 134718652 134718671 ACTTCAATGAGCTAGAAGCC 58 134718713 134722176 GAGCAATGCCTTTAGTATGC 57 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 1 2 2 80 4 62270224 62270242 GTTCTGGAGGAAGAGGAGC 60 62270284 62272463 CAACCTCCTCTTCTCTTCCTC 60 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377 2 1 2 80 4 62260110 62260128 GGAGTTAAAGGGCAAGCTC 59 62260168 62265589 CTTCTCATCTTTGATCTCTTCCC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415 3 1 3 101 6 51356150 51356169 CAGTAAGGGTGTCAACTTCG 59 51333962 51356086 ATAACTGGAGCGTTGAACG 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 3 3 7 93 20 4095963 4095981 AGAAGATGAGTGGAGTCGG 59 4096038 4096452 CCAGACTGTCCTTTCTGGT 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000017573 1 1 3 84 18 25199538 25200167 AAATTGCCAAGCCTGTCTC 59 25200215 25200233 TGAGCTACAAGATGAGCCT 58 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 2 2 2 89 10 53576934 53579198 TCATCCAAGAATTCAGTCGGT 60 53579249 53579267 GTACACGTAGACCCACGAC 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764 1 1 2 80 10 53571907 53574523 GCTTATACATCCATCATGTGACC 60 53574652 53574670 AGGGTAAGTACTGCTGGGA 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764 3 1 2 80 10 53571666 53571684 GTGAACGATCCAGATGCAG 59 53571916 53574528 AGGAAGGTCACATGATGGA 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 1 3 3 80 19 10432512 10434236 CATCTTCTCCTTCCATAATGCC 59 10432453 10432471 TGCAGTTCCTTCTTGAGGT 59 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 2 1 2 96 16 3759117 3759599 AACCCAGAGTTAAAGAAGCTG 58 3759041 3759060 CCTGGGAATCGATTCTTCTC 58 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 3 1 1 61 10 54246608 54246627 ATGAAGTGTTGGAGATCGTC 58 54250734 54250752 GTTCTTCACATCCTCAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 2 1 1 60 11 33890006 33890026 CTGTCTGTACAGAGCTACTCC 59 33892998 33893018 CTTGAGACATTCACCACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 1 2 2 80 18 28654630 28654651 GCCATCAGATTTGCAAATTCAG 59 28654692 28655901 ACGGAAGCATCACCTTCTC 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 114 18 56316005 56318429 AGTACTGGAGCCGATATGTC 59 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 113 18 56316004 56325239 TACTGGAGCCGATATGTCC 58 56315909 56315927 GAGAAACACGATGACCCAG 58 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 2 3 3 80 1 214154583 214155040 AGAAGCTTCAGTTGGAATACTG 59 214154524 214154542 AGTCAGGTTTCACCCTGAG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 2 2 2 80 14 77314621 77314726 AAGTTTCAGAACTGGATGAGG 58 77314561 77314579 TTCGGAGAAGATGTTCCAC 57 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259 3 1 2 106 11 33980176 33980194 GAACAAGGTGGAAGCTCTG 59 33980263 33980888 AACAAGGACCTGTCAAAGGA 59 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000083594 2 1 2 80 11 33980218 33980236 CTGACACGAGAAATCCAGG 58 33980283 33980889 AAACAAGGACAGGGAAGAG 57 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000090174 2 1 4 167 13 70243538 70245909 AGAAGGACTATCTGTTCCAGG 59 70249705 70249723 GCACAAAGCCAAACAACAC 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 1 2 2 85 18 64033404 64040275 GGGCTTCAGAGATCATGTG 58 64040324 64040342 GAAACGACTGAACGGATCC 59 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000084049 1 1 2 115 4 117267291 117267309 TAAGGAACAGGAGCTGAGC 59 117264593 117264615 CCAGGAGCTCAATGAACTG 58 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255 1 1 2 80 8 22940147 22940165 ACTCAGACTTGAGCAAGGA 58 22940209 22941931 GCTCCAGGGATTTCTTGAC 58 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 2 3 3 80 2 124134792 124138861 CTGGAGAAGATATTGGAGACAC 58 124134733 124134753 TCAACAGAGACCTGAATTCTG 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000044885 1 1 2 80 3 15374120 15376472 TCTTTGGTGATGGTGAAAGTC 59 15374060 15374079 ATTGGTCTTATCGCACTGAG 58 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000046645 2 1 2 80 1 133431542 133431560 AGTGTTTGATGAGGACGGA 59 133411269 133431501 TGTCCATCTCTAATAGACAGCA 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 1 1 1 60 8 76479840 76479861 CTGGGAAATAGCAGAATTTGTG 58 76479800 76479818 CTTCACATCTTGCTGAAGC 57 NA DesignNoJunction Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491 1 1 2 80 9 97218476 97225639 CATAACTGGGACCATCGAG 57 97218414 97218433 GAGAGTTTGACCTTCAGAGC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092 3 2 6 80 7 132088067 132091530 TAAGATAGGCAGCATTTCCAG 58 132088007 132088026 GCCTTTCTCCTTGTTACAGG 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 2 2 2 81 6 24163062 24163080 ATGATGAATGCTCCCTCCA 59 24163125 24181544 ATGGGTCGGGAAAGATCTG 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904 2 1 2 82 6 24160241 24163039 ATTCACTGCTCTGACTATCTGAG 60 24163081 24163099 CTGAGGCCAATCTCTTCCA 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 2 4 4 80 16 54374576 54374595 GTTGGAGATTGAAGCTAGCC 59 54374635 54375686 TTCTTGATTTCTGAAAGGGAGG 58 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 1 2 3 80 4 164300938 164300957 GCATGGATGTAAACAGACCT 58 164146104 164300897 TGTAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929 3 1 3 112 17 30557839 30620754 ATAAGCAGGCCACAGAAGG 60 30621146 30621165 ACTGGATTTGAGGTCCATGG 60 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000012222 2 1 2 85 4 7301402 7303978 TTCCCAGACAGTCTATGGC 59 7301053 7301071 GTACTCAAAGACTCGGGCT 59 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366 3 1 2 94 1 116674236 116674255 TTTACAACAGGCACAGACAG 59 116674309 116675340 GTAGGTAACCTTTCTGTGTCTG 59 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000073286 2 1 2 80 8 85795618 85795638 TGGCCTATTAGTACCAAAGGA 58 85795556 85795577 AACGGCTCTTCTTAGATTGG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 1 2 3 80 16 10889647 10895050 CTGTGAGAAAGACTACATCAACC 59 10889589 10889609 ATAAACTTGTCACCAGCTTCC 59 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014034 1 1 2 82 2 263940428 263975748 AAGTTCTGCCAGATCAGGG 59 263975794 263975812 CACATCAGGACTGAGGAGC 60 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 2 2 2 84 9 19538017 19540703 TCTACTTTGCACAGGTCCA 59 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 3 2 2 81 10 87225551 87225903 GGAAACCAAAGCAAAGATTCC 58 87225490 87225509 TTAGAATCTTGCTGCGTTGG 59 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150 3 1 2 88 10 87227651 87227753 TGGTTCCAAGAGAAGAGCG 60 87227581 87227600 ATTTCCGTCAGCTCATTCCT 60 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 2 2 2 80 14 71870248 71870266 ACTAAGTGGTCTCAGCTGG 59 71870310 71872638 ATACCAGTCACCTCTTGCC 59 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 3 2 2 80 14 71872691 71872712 GTAGGAAAGATGAAAGTCGTGC 60 71872751 71874775 ATTCCTCTGCAGACTCTTCAG 60 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 2 2 2 80 11 459036 459055 CTCTGACTTCGGACTTTCTC 58 446478 458998 CTTATTGGTATCTTTCCTCCTCTG 59 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 2 2 3 80 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504497 12524951 TCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 3 2 2 80 11 17119497 17119516 CTGGGAACAGACAAAGACAC 59 17080148 17119459 AAGATTAGACTTTGGTACTCCCTC 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 2 3 3 80 12 41354900 41355011 CTGAAGATCATCAAGGGAGG 58 41355053 41355072 GAGGAACACTACGATGTCAG 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133 1 1 2 80 11 4246430 4246449 CCAGTAACAACCACTGTAGC 59 4177345 4246390 CAGAGAATTGGGATCTCTTCTG 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160 2 1 2 80 3 79861379 79861398 ACAATGATGACACCATGCTG 59 79861438 79865436 CTTTCTCATAGTCCTTGACCTG 58 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 1 2 2 80 10 58368974 58370203 AACTGGAAGAGCAAAGAATGG 59 58370245 58370263 CTTGAGCCAGTCTAGGACG 60 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 3 2 2 80 11 17549423 17549445 CTTTACCAGTGGAATGATGACAG 60 17549482 17553326 TTCTGTTGGATGAATCTCTGGT 60 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 3 2 2 84 4 33929641 33929659 GACATTCAGACGACAGTGG 58 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191 1 1 2 80 7 66595858 66611102 GACACCTGGTATCTAGTAGATAGTC 59 66611138 66611158 CTGGTATTTGTCCCAACTGTC 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 3 2 2 80 8 56499903 56501884 TGAATCTGGGTCCATTTGTG 58 56501927 56501945 AGAGCGAGTCAGTCTTCAG 59 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654 3 1 2 106 5 14297761 14297779 GGAGAATTTGGAGCAGCAG 59 14295173 14297694 CATCAAATGAGCTAAGGTCCTG 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 1 2 2 80 7 15785804 15786683 AATCGGAGAATTCAGGTGGT 59 15786726 15786744 TGTCTTCTGTTGGTGGGTC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 1 2 6 80 12 41258884 41302467 ACTGGTACCAACTGTGTAAGG 60 41258824 41258842 AGGCATAGATCGTGAGCAG 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 3 1 2 102 10 88538698 88539124 GACAAGAAGGAGGTCACCA 59 88539190 88539208 TCTCTGATTTGGCCCAGTG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 3 2 2 83 1 127589308 127589327 GACCTTGCTCCATTTCTCTG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 2 3 3 81 8 90629317 90630521 CTGCTAAGAAAGAACCCGGA 60 90629255 90629273 CCTTCCTTTCCAGCTTCCT 59 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000066545 3 1 2 95 6 147097888 147099179 GTTTGTGGCAGGAATTGTC 58 147097811 147097829 TTGTTCCATGACAGCACAG 58 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000023020 2 1 2 90 1 219092507 219104772 GGCAATCTTAAAGATGAGGTCC 59 219113745 219113763 CAGAACCATTGCTTCAGCC 60 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000046849 2 1 4 85 1 139924861 139924879 GAAGGGCCATACCAGAAGG 60 139903201 139924815 GGATTAAAGAGTGTGGAAGCTG 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 3 1 1 60 8 109456217 109456235 TGCCTTACTTCCGACAGTC 59 109476796 109476817 ATAGGATCTTGAAGCAAATGCC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 3 3 3 83 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942058 144943888 GCCATTCTCCATGGAAACTG 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635 3 1 2 80 2 140366105 140366126 GACGATGAGACTTACATGATGC 59 140324569 140366065 TGATGCTTCCACTGTTTCTG 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000078412 3 1 4 80 20 12859745 12860304 AGATTATCTTTGGCTGGGC 58 12858056 12858074 ACAGCAAATGAAGTGTCCC 58 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516 3 1 2 81 16 81203043 81203973 ATGTCTATCAGACAGAGGTCAC 59 81204013 81204033 CAGCAGTAGCATGTGTTACTC 59 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 1 2 2 80 9 27441382 27441402 CCATTCTCAACTACATTGCCA 59 27440316 27441341 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000026466 3 1 2 81 1 199352976 199353001 GTAGTCTTCCTTTCATCATTGC 58 199353285 199353304 GGAAGTCTGTCAACTTCTGG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000027271 1 1 2 80 5 137084511 137084532 GTTCAAAGACTTCCTTCCTGTG 60 137076246 137084470 TCAATCTGCAATGCACCTG 59 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000051612 2 1 2 80 8 91384942 91387864 AAAGGCTGATAAAGAGTCACCA 60 91387903 91387923 CTGCTACTAGGTGTCTCACAG 60 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000065373 3 1 2 81 10 91268536 91272773 CATCATGAACTACCAGGTGTG 59 91272814 91272834 AATGTTGCTGTCTTCATTCCG 60 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218 2 1 2 80 10 91269642 91272774 CAACTTCAAGGAGGTGTGC 59 91272815 91272836 TCAATGTTGCTGTCTTCATTCC 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000028347 1 1 2 80 1 226851983 226852004 CAGTTCTGAATCCGACTATGAG 59 226850569 226851944 CTCTGGGAATTGTAGAAGGTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 1 1 4 107 12 38446875 38446894 CTGGAACTTCAACTCAAGGA 58 38447618 38450292 AATCATTTGCTGACTCTCCTG 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000049855,ENSRNOT00000045393 2 2 3 80 3 128914908 128919227 AATAGAAAGCGCTGATCAAGAG 59 128919268 128919286 TGACTGAAGTCATCGGCAG 60 NA Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 1 2 2 80 7 58340390 58342731 CCTATTATGGTAGCTTGCGG 58 58340329 58340351 CATTACAGGAGATCACAACAGAG 59 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 1 2 2 92 5 12141202 12143543 CTATAGAGGATCAGTTGACACAG 58 12141132 12141150 GTACTAGTGGTGCGAAGGA 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 1 2 2 80 10 25907242 25907260 AAGCTACTACTGCCTTCCA 58 25906665 25907201 GATCGTTTCTCCTTTCAAATGG 58 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 3 2 2 80 10 25906506 25906610 TTTCTAAGGCAAAGCCTTCTG 59 25906446 25906469 CTGTTAACTCCACATACTTCAGTG 60 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646 1 1 2 134 10 25906115 25906133 AAACAAGTGTTCCAAGCCG 59 25904321 25906017 ATGTACTCGGTTCCCATGG 59 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 3 2 2 80 9 76646235 76666316 CCACTCTGTGGGTAAACCT 59 76646173 76646191 TCCTTGTGTTCCTCCAGTG 59 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000045373 1 1 2 80 5 5312638 5316369 TCTACCTCCAGGAGAAAGG 57 5316413 5316431 GTTCATCACGTTCATCACG 57 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000022285 3 1 3 86 19 15396486 15396505 CAAATTCTTCAGCATACGGG 57 15392031 15395817 TCTAGAGCCAATAGGTGGT 57 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437 1 1 2 80 8 94494286 94500672 ACCTGGAAACAAATCTGGTG 58 94489472 94489496 GGTGTAGAATTAGGAGATGTAACAG 59 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 1 2 2 80 3 46711075 46721470 CAACCCTTGCAGTAGTATCC 58 46711014 46711033 TCAGCATCATCAGTCAATGG 58 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754 1 1 2 84 1 143712633 143718171 AGTCCTACACTTCAAAGAAGTC 58 143712570 143712589 TTCTCCTCTTCTTTGCAGTC 58 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000090114 1 1 2 88 8 58144781 58144970 CTGGAGAAGATGCAGAGCT 59 58145020 58145040 GGCAGGAGATTTAGAAGACAG 58 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 2 2 2 87 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371887 67372036 CCAGCTTCACCTTATGGGT 59 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 1 2 2 80 8 94326201 94326222 TTATCAGTATCCACGACAAAGG 58 94322635 94326160 TCACCACAATAGCCTTGAC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367 2 1 6 81 13 84474333 84474356 TCTGGATCTGAATGGGAAGG 59 84474399 84490605 TTCAACCATGGCTGTTAACC 59 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000018552 1 1 2 80 9 27630493 27634473 AAGCAGAGTCAGAAGCTGAG 60 27630432 27630451 TGCTTGTCTGCTCTTAATGC 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386 1 1 2 89 1 239442200 239442218 CATCGACAGACTCATTGCT 58 239442270 239443440 TCTGCAAATGCTGAATTCTG 57 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076758,ENSRNOT00000000787 1 2 3 80 20 21789423 21840972 ATGAGTTTGCGCCAAATCTC 60 21841015 21841033 TTGAGCCACTGAAGGAGTC 59 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000078122 1 1 2 80 7 18600683 18600950 CCTTTGCAGAAAGAAACTTGTC 59 18600624 18600644 GGATGTTCTTGAATGCTTCCT 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026 1 1 5 80 4 176279633 176279653 AAGGCCAAGGAAGAAACGA 60 176271189 176271208 TGAACAGCATGTAAATCGGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677 2 1 2 80 10 87245855 87245876 CGACTTAGAAATACAACGTGAG 57 87245674 87245814 AGAACTCCCATTTCCTCCT 58 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 1 2 2 80 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122550 5122568 CAACTCTTCCATGGTGGGA 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014104 2 1 4 80 10 65316644 65316665 TTCTGACTACAAGCAGTATGTG 58 65310835 65316605 TCTAGGGAAATCCTCTGAGTG 58 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000091389 3 1 2 140 13 80759741 80759759 ATCTTCCCAACCGTAGAGC 59 80755698 80756759 CTCTGGCTTTCCAAACAGG 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000086660 2 1 3 81 4 147687633 147689061 CACTGACTGGATCTCTGGG 59 147692075 147692094 CAACTCTGACATCAGGTCAC 58 NA Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 3 1 1 60 3 148057397 148057416 GCCATATTTGTGACAACGGA 59 148051608 148051627 CCATGCATTGAAGGGTAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445 2 1 2 89 10 90308311 90308335 GGAACTGGAACATGTAATAGAACAG 60 90307290 90308264 TCTGTGGGAAGAGCTTCTG 59 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 2 1 1 61 7 1737909 1737927 TCTGATAGGTGGAGGAGCT 59 1737853 1737871 ATGTCAGCTTCTCCAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 3 2 2 93 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493119 14493139 TTGAGCGTCATCAAAGATGTG 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000091084 3 2 3 82 12 37900826 37900844 CTCCATCAGCCTTTCTCCC 60 37900889 37900990 CTGTGATGAACTGACACTGC 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 1 3 3 80 19 21479336 21481581 GAAGCTCCAGATCTTAGATGC 58 21479276 21479296 CCTTCAATCTGTCTGACAAGC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 3 2 3 81 14 72335551 72335569 GTTCTCAGCCTTTGGATCC 58 72333613 72335507 ATCATAGCAAGTTCCACAGC 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 1 2 2 80 7 15247728 15248595 AGGAAGCCTGAGAACTCTG 59 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526 1 1 2 80 1 229077694 229078805 CTGATTTGGGTTCCCAGTC 58 229078847 229078867 CTGAGTGTTTGACTTGGAGAG 59 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829 1 1 2 80 19 17024133 17045085 AATGTGTATAAACTGAGGCTCC 58 17024074 17024094 ATAGAACTCGTCATCTTTGGG 58 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 2 2 3 81 20 4534117 4534222 CTTTCCGTAGGTCAGACTC 57 4534266 4534285 GTCATGTCCTCTCCATACAC 58 NA Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 3 2 2 83 9 41007334 41007353 CTACAAGCCCTCACAAACAC 59 41007398 41008032 TTGCCACAGATTTCCTTCTG 59 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000052017 1 1 3 90 4 150797187 150797205 CAACTTCGACAACTTCGCC 60 150788365 150797134 ATCATTGACCCAGTACAGCA 59 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 3 2 2 93 10 56826114 56826218 TCTGTCAGGCTTCCTAAGG 58 56826275 56826293 CATGTAGATGAAGCTGCCA 58 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 1 2 2 80 11 34592889 34592909 TGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 3 2 2 81 11 34592889 34592910 TTGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000044363 1 1 2 104 10 57611214 57611232 AATGTGAACGAGCACAGTG 59 57611300 57613519 CTTATAAGCCAGGCAGCTC 58 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 3 2 2 95 7 2850708 2851376 ATCCTTGAGTGGGTGAACTC 60 2851434 2851452 CTTGATTACAGCCTGCAGC 59 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 1 2 2 80 1 205911975 205922912 CGGTGTCATTTACACAGGC 59 205922954 205922974 TTCAGTCGAAATCTGTACAGC 59 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 2 1 2 80 14 77079507 77081919 AGGACAAAGAACTGGTCCTG 60 77081960 77081980 GTTGTACCCATAGAGGAAGGA 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343 1 1 3 137 12 47228688 47228706 CAACAAGAACAGGGTGCAG 59 47228804 47243804 ATAAATAATAAGCGGCAGAGGC 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000026051 1 1 2 80 2 210872933 210872953 CAAGTCCAAGGCCAAATATCC 59 210868866 210872891 AGACCACTTCGAGCTTCTG 59 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000079792 3 1 2 83 7 91865752 91867158 TTCATGTTGCTACAGCTGC 59 91867204 91867223 GCAGATCAAAGCTACTGCTG 59 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000047444 1 1 2 80 X 20393852 20394107 GCAACTAGTTCTCAGGAGC 58 20394150 20394169 GGGCATAACAGAAGACTGAC 58 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000047444 3 1 2 81 X 20393855 20394110 ACTAGTTCTCAGGAGCAGC 59 20394152 20394173 ATATGGGCATAACAGAAGACTG 58 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 3 3 3 129 9 44493705 44571061 CTGGGACTACAGAAGGCAC 60 44571154 44571172 CTTCTGTGGGAAGTCCCTG 60 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607 3 1 2 85 8 55453423 55458297 CAAATATTCTGACGGTGAAGCA 59 55453359 55453377 CTCTGCGTTCTTTGGTGTC 59 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 2 2 2 89 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476584 63476602 TGAAGGTGATGCTAAGCAG 58 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879 3 1 2 83 10 89986711 89986729 CCTTCCAGCCTCTTACACC 60 89986775 89987406 CAGGAGAAGTCAGTTCTGGG 60 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 84 13 91189251 91222367 CATCACTGTCCAAGGTTCAG 59 91189186 91189204 CAGGAGGCACATCACTAGG 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000080339 3 1 5 80 1 215680176 215680194 GGAGAAGCTGAAACGTCAG 59 215681296 215683401 GCCTTCTTGCTGAACTTGG 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000079962 3 1 5 81 7 80750780 80777746 AATACACTCTGATCACCACAC 58 80777789 80777807 AAAGATTCTGGCTCCAGGT 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 1 2 5 80 7 80745186 80745205 TGGTCAAGAAGATGGCAGAG 60 80745248 80777746 GTGTGGTGATCTCCCACTC 60 NA Rattus norvegicus 81 Fgd1 ENSRNOG00000038970 ENSRNOT00000003443 1 1 1 80 X 20124605 20124626 TTCCATATTGCCAATGAACTCC 59 20124666 20125370 GGCACAGAATACCTGATCCA 60 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038,ENSRNOT00000038017 3 2 2 80 1 277160342 277160361 GATTACAACTACCCAGCCAC 58 277153360 277160301 CCTGTAGTTGACATCCTTCAG 58 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000022138,ENSRNOT00000081472 1 2 2 80 2 27947387 27947406 CCTGAAGGCTAAGCTCTACC 60 27947252 27947349 CTCTTCTCATGCATCTTAATGGTC 60 NA Rattus norvegicus 81 Gdf2 ENSRNOG00000057751 ENSRNOT00000085255 3 1 1 80 16 10267898 10267918 TGTACAACAGATACACTACGG 57 10267959 10271052 ATATAGCATCTTCCACGCTG 58 NA Rattus norvegicus 81 Nmi ENSRNOG00000027502 ENSRNOT00000030373 3 1 1 81 3 37464442 37464552 AGATTTCAGGTTCATGTGGAC 58 37464381 37464399 TTGTCTGCTCCTCAGACAG 59 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 1 1 1 80 7 18463328 18463507 TACTATCAGCTTCTGGAAGGG 59 18463543 18463567 GAGGTAGTAATAGTAGTCTGGTGTC 60 NA Rattus norvegicus 81 Lalba ENSRNOG00000010811 ENSRNOT00000014456 2 1 1 80 7 140089820 140090268 ATCTCCTGTGACAAGTTCCTG 60 140089760 140089779 GATCCCTTTGATAGCCACGA 60 NA Rattus norvegicus 81 Ankfy1 ENSRNOG00000016212 ENSRNOT00000021816 2 1 1 80 10 59279498 59279519 ATAGCAGTGAGTCATTCATCAG 58 59279557 59281609 TCTTCAAATCACTGTACTGCTC 59 NA Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000066767,ENSRNOT00000086116 1 2 2 80 7 60727117 60727844 AGTGAAACAGAAGAGAACACAG 59 60727058 60727076 GCTCTCATCAAAGGACAGG 58 NA Rattus norvegicus 81 RGD1563441 ENSRNOG00000021540 ENSRNOT00000012061 1 1 1 165 10 55940897 55940915 AAGAAAGCGGAGAGGATGG 60 55941044 55941162 GGACAGTAGAGCACATTGC 59 NA Rattus norvegicus 81 Nr1h2 ENSRNOG00000019812 ENSRNOT00000026862 1 1 1 82 1 100556833 100557295 CCATCGAGATCATGTTGCT 58 100556769 100556788 GTAGGTGAAGTCCTTCAGGA 59 NA Rattus norvegicus 81 Baalc ENSRNOG00000004697 ENSRNOT00000006411 1 1 1 62 7 77820773 77820791 GAAGCAGAATGGCCTTTGG 60 77834815 77834833 TCTCTTGCAGACATTCGCT 59 NA DesignNoJunction Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095 1 1 2 86 19 21554277 21554574 CTTAGGGCCGACAGTTCTC 60 21554624 21554642 CACAAGCAGATGCTGATCC 59 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 1 2 3 81 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876 1 1 2 130 2 172349988 172361534 AAGGCACAGAAGAATGAGAG 58 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805 1 2 3 87 1 217620426 217620444 ATTGACAAGGACAAGGTGG 58 217619935 217620378 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805 2 2 3 89 1 217620427 217620446 GAATTGACAAGGACAAGGTG 57 217619935 217620378 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 1 2 2 80 8 50080507 50080603 AGAACCAAATTAGAGCCGAG 58 50080446 50080464 CCCTTTCAGCTTTCTGGAG 58 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 3 2 2 80 8 50126382 50126402 ACCTATCCTCTTAGGTGACCA 60 50120504 50126342 TCAAGGATTTCTTGCTCACTG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 2 2 2 87 3 79731718 79731736 AGAGGCAATAGACGCTTGG 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 1 2 2 80 2 153847858 153847876 GGGAACATGGAGAATGCTG 59 153847919 153848789 CAAATCTTCAACCACGTGCT 60 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246 3 1 2 82 3 48809686 48810131 TGTCAAAGTTTCACGTTCCT 58 48801400 48801419 TTGAATCTGATGTGGATCCC 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000083659 1 1 2 86 8 32545800 32545906 AGGCTTTCTGTAAGCAGGA 59 32546689 32546707 TAGGCCGAACCACATAGTC 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172 3 1 2 155 8 128577143 128585820 GCAGGTTTCCTATGTAATTCGA 59 128585935 128587752 TATGGATCTTGCTTGTGCTG 58 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000033489 2 1 3 82 14 10879809 10879827 TTGAGGAGGATTCTCGTGG 59 10879871 10884523 TTCCTCTTTAATGCGCTTCTC 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770 2 2 3 81 10 89181820 89181839 CCTTCAAGACCGTGTATCGA 60 89181883 89183350 GAGAGTTTCCGAGTCTGCA 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000074457 2 1 2 80 8 32306681 32306699 GCTCTGAGGAAAGTGAGGA 59 32302565 32306639 TTCCAGATCCTTCGTTCTCAG 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818 2 1 2 81 8 32306682 32306700 AGCTCTGAGGAAAGTGAGG 59 32305141 32306637 GCTGAGTGTCTTCGTTCTC 58 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000064184 3 1 2 81 1 101166911 101166929 GGTCTGTCCACAAACAGGA 60 101166973 101167225 CAGTTGAACTGGGCTTTCTC 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541 3 2 3 80 20 49468467 49468716 CTCAAACCTGAAGGTCCAC 58 49468405 49468423 TGAGTAAAGCCCTTGTTGC 58 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619 1 1 2 80 7 2556519 2556540 AGACATCTCCTGTACAAGTACC 59 2555896 2556478 TCAGAACTGAGCCTGAAGG 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000078703 3 1 3 151 3 159937100 159941150 CATGGGCAATGACACATCC 59 159941264 159941283 TCCTGAAGAATCCCTTGCAG 60 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000080305 1 1 2 81 2 266317853 266353086 AGGAATGCTGATGCTCCAG 60 266353131 266353149 TATGGTGGTTCTTCCGGAC 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000036502 3 1 2 93 X 26357790 26357946 CGAGTAAGACAAGAGATGAAACAC 60 26357716 26357737 CACAGAATGAACATGTCCAGAC 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000000824 2 1 2 82 12 50288802 50292760 ATTGAGGAGGTGTACCACAG 59 50288739 50288757 GTCTCATCTCTGGGCAGTG 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 3 3 3 80 3 147803945 147803963 TACATGCACACTGTCACCA 59 147803022 147803902 GTCCAGGAATACCATGTCCT 59 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000083702 2 1 3 92 1 40879926 40899159 ATTACCATCACAGTTGGACAG 58 40899213 40899231 ATCTTCAACAGCTGTGGAG 58 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 1 2 3 92 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390866 154391144 GATGCCATCATACTTCTGCTG 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 3 2 3 94 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390864 154391142 ATGATGCCATCATACTTCTGC 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000033656 1 1 3 81 X 23139471 23139491 CCAGGTTACAGAAGATCTGGA 59 23124618 23139428 AACTGTGGTATGGAGGAGC 59 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939 3 1 2 85 1 46169890 46169911 GAATCAGTAACTTTCAGCAGAG 57 46169956 46182856 TCTGGAGTAGTTACCTTGGG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 2 2 2 80 20 50447314 50448805 TCCTAAAGGGAAGAATGAAGGT 59 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 2 2 2 81 1 71434849 71434867 AAGAAGCTTGGTCTCCAGG 59 71434911 71445501 ATGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080 2 1 2 82 1 213521105 213527176 TTTCTGCAGGGTATCCCAC 59 213527219 213527240 TTGTCCTACTCTTTGGTAAAGC 58 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000004699 2 1 2 80 10 96206469 96206488 TAATGGAGCACAATGTGTCC 58 96204363 96206426 GGTGTTTGGTCATAAGCCC 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670 3 1 2 60 16 47179845 47179864 GGCTTCTGTTTAAATTGGCT 57 47178444 47178464 ATCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000019180 2 1 2 80 9 46763227 46765332 CTGTAAGGATTGACTTGACTGC 59 46765372 46765391 AGTCTGTCACTTTGTGAGGT 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000045130 2 1 3 80 7 66777514 66777535 TGTAAACCTCCACAGTATGGAC 60 66777574 66778162 CGGTGCAAATAGTTGGATCTG 60 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 1 2 2 80 7 98194923 98194941 GCAGTAAAGGACCAAAGGC 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 3 2 2 80 1 6467830 6467849 CCTGAAGTCTGTGGAGAAGG 60 6467423 6467789 TGCAGATTTCTTTGCTCTTCC 59 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 2 2 2 80 10 98342514 98344718 GCATTGACGACTATAAGAACAGAG 60 98342457 98342477 CATGACCAAACCAGTATGCAG 60 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 2 2 2 80 14 86146443 86146639 ATTCAAGGAAGCCTTCAGC 58 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000067486 3 1 2 91 16 50373567 50379263 TGACAATGGGTACCACTGG 59 50373494 50373515 CATCGATAACCTCGTAATTGGG 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023 2 1 2 82 16 50379268 50379286 TCCTTCCAGTCAGAGTCCT 59 50373562 50374550 GTATCCCAGTGGTACCCTC 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000085725 1 1 2 80 8 87245464 87245482 TCATCTTCATTCCCATCGG 57 87233007 87245423 CTGTTCCAGTGTAATCAATCTC 57 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 1 2 2 80 5 154312108 154312228 TTCCATTCGTGGAGAAGACTC 60 154312270 154312288 TCCTCAAACTCCACAGAGC 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 1 3 8 85 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 2 2 2 80 2 210700543 210700561 AAGCACCGTATGTTTGAGC 59 210698778 210700500 CTCAAGGGTCTCAAATCGAG 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000014248 2 1 3 91 16 54184312 54184330 AATGAAGTTCAGCACACGG 59 54184385 54187893 TGACACCTGTTAACCACCA 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 3 2 8 86 20 4387144 4387162 AAGAACTTCCTTCGTGTGG 58 4382463 4387095 ACCAAAGAAGCTAGATTGCC 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 2 1 1 78 8 43534538 43534557 CTTCCTCTTCAGGCCTTAGG 60 43534447 43534465 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 3 1 2 80 16 71281038 71282793 TCAATGTCTCAGATGCACTG 58 71280977 71280997 TGTCTGTCTCTTTCTCCTCTG 59 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000073847 1 1 2 80 2 49128471 49128491 CAAGTCGCACAGGATTTGG 60 49128409 49128429 GTTTGTGCGATTTAATGGTGG 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 3 2 2 81 8 130768294 130768313 TGTGGATCTCTTGCGTACTC 60 130768355 130792992 CCAGGCTCCATATGTCTACTG 60 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 2 1 1 65 3 153951985 153952009 GTCTGGTTACACTTCTTACTTAGTC 59 153949293 153949313 CCAGTTGAAGCATAAATCCGA 59 NA DesignNoJunction Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849 3 1 2 131 3 164048716 164048737 ATTCATGAGCTCTTCTCCAGAG 60 164041132 164047818 CAGACACAGGAAGGAGTCG 60 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 3 2 2 80 8 132860183 132860202 GAAGACACTGAAGACATGCC 59 132852087 132860144 GGGTAATTTGATCATCAGCTCTC 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000048985 2 1 8 151 20 4483902 4483920 CTACCAGCTAGCAGATGGA 58 4484149 4484346 AACAGGGAGTTATCCTGGG 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486 2 1 2 138 2 52379445 52397425 AAGCCATACTTCCCATAGC 57 52397527 52402878 ACATGAAGGATGACAGCAG 58 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694 3 1 2 82 8 94225895 94226580 ACCTCACAAGAAAGTGCAG 58 94225831 94225849 GGTCTTTCTCCAATGCCTC 58 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000087718 2 1 2 94 20 47557150 47557168 TGGTGGCTTTACATTGCAG 59 47557224 47558617 TTCAGCTCTACCTCTTCTGTG 59 NA Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 3 1 1 86 16 75465836 75465854 TCTGTCTCCTTTGAAGGCC 59 75466489 75466507 GAAACTTCTGCAATGGCAC 58 NA DesignNoJunction Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 1 2 2 80 16 81046509 81046530 GAATTTGGCGTCTTCTTTACTC 58 81046568 81054938 GGATATTCTCCACACCTTTCTC 58 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113 3 1 2 80 3 171774089 171780656 GACAAGAACGACTGCTATCG 59 171780697 171780717 TCAAAGTTGAGAACGTCTCCT 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419 1 1 2 98 5 77151858 77151876 GATATGGAGAGGTGGCAGG 59 77151933 77156271 CATGAGGCACTTCTCATAATACTG 60 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 3 2 2 92 16 80751528 80751549 TTGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000088523 2 1 4 149 5 160361409 160361428 GTACTCCAGGGAAGATCGAG 59 160363067 160372964 CTGTCTGCATGGGAAAGTG 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577 2 1 2 80 5 157665475 157690582 GTCTGAAATGAACTCTAGCGA 58 157690624 157690642 TTCTCAATCTGCTGTGGAG 57 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 1 2 3 82 3 153451935 153451953 AAAGATCCAGGTTCAACCG 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 2 2 3 83 3 153451935 153451954 CAAAGATCCAGGTTCAACCG 59 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 3 2 2 117 3 161021667 161024020 CCCAAATTCTGAGCTTCAGC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962 1 1 3 80 3 51404684 51407816 TAGCAAAGCTTGGAAAGATCTC 59 51404625 51404646 AAATGGTTCTTGTCACTACCAC 59 NA Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000068416 3 1 2 93 16 82217489 82220075 CCTAATGGATCTGCTAAAGTCTC 59 82220128 82224267 TGAACACAGTGGCAATTGG 59 NA Rattus norvegicus 81 AY172581.14 ENSRNOG00000032112 ENSRNOT00000049156 1 1 1 60 MT 2679 2698 GCCAGGTAATTGCGTAAGAC 59 2716 2739 TATTAGGGAGAGGATTTGAACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013586.1 ENSRNOG00000036420 ENSRNOT00000054532 1 1 1 60 2 245137043 245137066 AATAGAAGGTAGAAAGTCTCTGGG 60 245137085 245137103 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040624.1 ENSRNOG00000058183 ENSRNOT00000082858 1 1 1 60 X 106607189 106607207 CCATCGGCATGTTCTTCAC 59 106607147 106607166 GTGTACTTGGTAGAGGTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044408.1 ENSRNOG00000051805 ENSRNOT00000084490 3 1 1 110 20 4833321 4833341 TCTGTGTACTCCTGTGTACTC 59 4999954 4999972 TTAGCTGTGAGGAGCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055509 ENSRNOT00000082394 1 1 1 60 2 188168311 188168331 CTGTGATTTCTCCAAACTCGG 59 188168352 188168371 AAGCAGTCCTTCATTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051920 ENSRNOT00000077081 3 1 1 67 2 198528060 198528078 TTATCCATTGCACTCCGGA 59 198528109 198528127 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010878.1 ENSRNOG00000051664 ENSRNOT00000086522 2 1 1 80 2 154501756 154501779 GAGATTTCACCTCACATGCG 59 154501821 154501840 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057918 ENSRNOT00000087318 1 1 1 60 2 79604301 79604319 GCATCAGTAGGTAGCAGAG 57 79604259 79604277 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070060.1 ENSRNOG00000052582 ENSRNOT00000080059 3 1 1 93 8 47036267 47036575 AAAGCAAAGACCAAGCTGC 60 47036631 47036650 AGATGTAGATCTTCTGGCGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052164 ENSRNOT00000088904 1 1 1 60 16 20933173 20933194 ATACAGAGAAGATTAGCATGGC 58 20933134 20933153 GGAACGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057457 ENSRNOT00000090196 3 1 1 60 8 71502930 71502950 AGATGCCATGATATTGAAGGG 58 71502890 71502912 CATCCAGAGTGCTATGAATAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059677 ENSRNOT00000078397 2 1 1 60 8 75827639 75827658 GAGCACTCGTAAGCATATGG 59 75827678 75827699 TTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060794 ENSRNOT00000077752 3 1 1 60 5 35315051 35315070 CAGCAAGGGTTTGTACAGAG 59 35315092 35315111 ACCCAATCTCAGGTCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056680 ENSRNOT00000083348 3 1 1 60 11 47319488 47319507 TGACCCAGAGGAGATTAGTG 58 47319528 47319548 AACACTTCATGAGTTCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060895 ENSRNOT00000082804 3 1 1 61 11 19700052 19700070 TTGGAACATCTTGCAGCAC 59 19700009 19700029 AGGCCATGCTAATCTACTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054528 ENSRNOT00000091045 3 1 1 60 5 173404867 173404889 GTGTTGCTCTTATATCAGTCAGG 59 173404829 173404850 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058814 ENSRNOT00000087256 2 1 1 60 2 109632954 109632974 GATCGCTTGACAAGTTATGTG 58 109632995 109633014 GAAAGTTTCACAGGGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052872 ENSRNOT00000091971 2 1 1 60 11 5021856 5021878 CATGTCACATGTACATCAGTAGG 59 5021818 5021838 CACTGAGCATAGACATAGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 2 1 1 69 8 23323445 23323463 GCCGATTAAGTCCCTTTCC 58 23323394 23323412 ATTACCAAGGAGGCTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135294.1 ENSRNOG00000053696 ENSRNOT00000079637 2 1 1 60 3 101047272 101047290 TATTGTGAAGCCCTAGGCA 58 101047230 101047250 ACATTCCTGAAGGAGGAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026517.1 ENSRNOG00000049013 ENSRNOT00000072236 1 1 1 70 16 80549455 80549473 ATGAGACCCAGCTGTAAGG 59 80549403 80549421 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057551 ENSRNOT00000078181 2 1 1 60 8 32366179 32366198 ACAGAATCACAGCCAATGAG 58 32366219 32366239 AGTCGCACTTTGAATTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059078 ENSRNOT00000087164 3 1 1 60 2 84864743 84864764 TGCTGTGTCATATGTACATCAG 58 84864704 84864724 ACTGAGCATTGACATAGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059388 ENSRNOT00000079685 3 1 1 60 8 132197062 132197082 ACGTCTTTCTATGACACTCTG 58 132197022 132197042 TGAGCTGACCATTACATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052262 ENSRNOT00000080975 1 1 1 60 16 41928701 41928720 CGGAAATTGGCAGAGATGAG 59 41928660 41928684 GATGTTTATAGGGTAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055748 ENSRNOT00000086759 1 1 1 60 16 19382269 19382289 ACACTACAATGGGAGAATTGG 58 19382229 19382252 CAATTAGCAATAGTCACACCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.1 ENSRNOG00000051899 ENSRNOT00000085174 3 1 1 60 1 1726461 1726481 CTAGTGCCATCCTGATGAGAG 60 1726421 1726440 GATCTGACACTTGTAGGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053499 ENSRNOT00000088013 2 1 1 60 2 50578093 50578111 GTGCATCAGAAGGTAGCAG 58 50578132 50578153 TCTGATTCTCATAGGAAACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057055 ENSRNOT00000081617 1 1 1 60 8 85571952 85571970 AAATCGGAACGACACAGAG 58 85571910 85571928 TCATGAATTTGCGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058394 ENSRNOT00000086778 3 1 1 60 16 52549549 52549569 ACTGATGTTGGACGAATACAG 58 52549509 52549528 AACTGTGTACCATCCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045798 ENSRNOT00000073711 2 1 1 66 16 5069326 5069345 TCTACAGCCACATTACCCTG 59 5069279 5069297 GGCCTAACCAAGCTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.2 ENSRNOG00000056737 ENSRNOT00000080388 1 1 1 60 8 116880149 116880167 AATCTCTGGAGTCAGAGGC 59 116880107 116880126 CTGACACTCACCGTTATACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 1 1 1 60 16 76412449 76412467 GTCTGCTGTGTCTCAAGTG 59 76412488 76412509 GAGGTCAAACATAGTCTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 3 1 1 61 16 76412449 76412467 GTCTGCTGTGTCTCAAGTG 59 76412490 76412510 AGAGGTCAAACATAGTCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058511 ENSRNOT00000085656 2 1 1 60 16 53889744 53889762 CCCAGCCATGATGATTTGC 60 53889702 53889724 TCTCTGTAGAGACTGTCAAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000060263 ENSRNOT00000081805 2 1 1 60 16 2193861 2193885 GGTCATTTATACTGTAGGAAGAGGA 60 2193903 2193921 AGCAGACTTTCCAAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000058708 ENSRNOT00000078805 2 1 1 60 16 24545285 24545303 ACATGTGTCACTAGGTGGC 60 24545327 24545345 CAGGTCAGAACACTGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058756 ENSRNOT00000079881 2 1 1 60 17 20263018 20263039 CTTTCCAACTGGATCATAGGAG 58 20263057 20263078 TGAGACTACATTATTGTGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059941 ENSRNOT00000088216 2 1 1 89 17 47856780 47856798 CTCAGAAGCTAAGCAGGGT 59 47856709 47856730 AGACAACTAGCAGAACTATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056492 ENSRNOT00000090969 2 1 1 61 X 101117188 101117211 CACATGTGCATTAGTAGGTATCAG 60 101117150 101117171 AGTCTGAACACTGAATGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072362.1 ENSRNOG00000052980 ENSRNOT00000071557 3 1 1 82 14 2533727 2534554 GGGACCACAGAAATAGCAG 58 2534600 2534618 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 SNORA75 ENSRNOG00000052748 ENSRNOT00000080697 3 1 1 60 9 93369833 93369854 GAGAAAGTTCACAGAACTAGCA 59 93369794 93369814 AACAGCCAAATAGATCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055514 ENSRNOT00000088718 3 1 1 60 X 152074550 152074571 GCATTGCAGTTACAGAGAAGAG 60 152074511 152074531 TGGTCATAGGTCAGATCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002835.1 ENSRNOG00000031073 ENSRNOT00000050523 3 1 1 116 1 86653683 86653709 CTACACAAAGGAATAGCAATAGGAC 60 86653783 86653801 AAACTTCAGGGAACACCCA 59 Novel Rattus norvegicus 81 AABR07012592.1 ENSRNOG00000037223 ENSRNOT00000056241 3 1 1 104 2 198682671 198682692 ATTTCATGCCTCTTAGCCAG 58 198682585 198682604 CATCCTGAAGTATCCTTGGG 58 Novel Rattus norvegicus 81 U5 ENSRNOG00000052829 ENSRNOT00000083092 2 1 1 66 6 11304918 11304937 TGGTTCCTCTTCAGTTTGTG 58 11304966 11304984 GAGTGGATGCTTTCCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000053764 ENSRNOT00000087746 1 1 1 60 1 101121699 101121717 TGTCTCCCACTCATGTTCG 59 101121657 101121677 CAGATGGTAGTGCATGTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035541.3 ENSRNOG00000061371 ENSRNOT00000089349 2 1 1 60 12 19254307 19254325 ATGCGCTATCGAAAGTGTG 59 19254265 19254284 GTGGAGCTGTTAGTATAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054240 ENSRNOT00000077904 1 1 1 60 X 33734106 33734124 TGCCAAGGTCATTTCACTG 58 33734064 33734082 GAGTTTCGAGGGAAATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056042 ENSRNOT00000080428 3 1 1 60 X 85123307 85123326 AAAGGAAACTCTTCCTGAGC 58 85123346 85123367 CACCACAATTCAATCTGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056696 ENSRNOT00000086666 3 1 1 60 6 133822236 133822255 ACCAATGATGAGATCTGGTG 57 133822276 133822296 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000055223 ENSRNOT00000086233 2 1 1 70 1 41383977 41383995 ATAATGTCCAGCACAGGGT 59 41383925 41383946 TTCTGGAATCAAAGTTCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059951 ENSRNOT00000087687 1 1 1 60 2 164737339 164737357 GTGTCCATGTCAGTAGGTG 58 164737297 164737316 GTTGACAGGTCAGAACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070085.1 ENSRNOG00000052246 ENSRNOT00000092188 1 1 1 60 8 50526684 50526702 GGCTTTCTCACCAAGTGTC 59 50526642 50526663 TACCCTGATCGAGTATCATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000056420 ENSRNOT00000084307 3 1 1 65 2 260115728 260115748 GATGAGCTGGCATGTATTCTG 59 260115683 260115707 CAGAGTAATTCTAGAGCTAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054285 ENSRNOT00000081186 1 1 1 60 9 64150390 64150411 CACTTGGAAAGGGAGATAAGAG 58 64150431 64150450 CACTGAATAGGTCTCACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.2 ENSRNOG00000059270 ENSRNOT00000084836 1 1 1 80 10 76363872 76363893 CCTTAACCGTAAGCATTTCTGG 60 76363932 76363955 CTGCTCAATTCTGTGAGAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057873 ENSRNOT00000082942 1 1 1 66 9 41623003 41623021 AATGCTCCTAGAGGCACTG 59 41623051 41623069 TAGACTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000053998 ENSRNOT00000090733 3 1 1 61 X 63668873 63668892 AACTGACTCCTCTGTTTGCA 60 63668831 63668849 GTGCTTCTTATCACAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052900 ENSRNOT00000082512 1 1 1 67 16 87696667 87696687 GTAGCTATTGTGACACATGTG 57 87696620 87696640 AGACCGAACATAGACATAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059895 ENSRNOT00000082168 1 1 1 71 16 22497869 22497887 AAACCAGTCCCTTTCTGCA 60 22497816 22497834 GAATGCACTCCCAAGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 2 1 1 61 1 149718192 149718212 GTTCAGATGACACTGACTTCC 59 149718234 149718254 TTGAAAGTATGCACACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA35 ENSRNOG00000057599 ENSRNOT00000086779 1 1 1 72 X 118116617 118116636 CTTTCTCTTGACCAACTGGG 59 118116671 118116689 CACAGTGTGACTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041822 ENSRNOT00000063575 1 1 1 60 X 51691484 51691505 TAGCCATACCAAATTAACACCC 59 51691523 51691544 GCCTAACCATGCTTAACTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.2 ENSRNOG00000052460 ENSRNOT00000086184 1 1 1 60 1 158913079 158913099 CAGCATTTGCTGTCACCTG 60 158913037 158913056 GAGATTTCACCTCACACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000055785 ENSRNOT00000089452 2 1 1 60 X 51229579 51229599 GTGATTCAACTGATCTGGCTG 59 51229539 51229557 CACATGAACCAGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058149 ENSRNOT00000090194 1 1 1 60 6 117111708 117111726 TCCAGATATGCTGAACCCT 58 117111750 117111768 AGTGTGAACACAGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000080722 3 1 2 81 5 47834593 47834613 ACACTTTGAGACTTTCAGCAG 59 47834654 47844382 TGGTCAGATTGACTTATCGTG 58 Novel Rattus norvegicus 81 AABR07030524.1 ENSRNOG00000028427 ENSRNOT00000033244 2 1 1 60 10 91753197 91753217 TGACTCTTTCTACCTGCAGTC 60 91753239 91753257 GAGTTCCTCATCTAGGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044784 ENSRNOT00000070051 3 1 1 62 6 127776516 127776535 GAGCATGACCATCTCTTCTG 58 127776557 127776578 ATCCTAATACTAACTAGGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056016 ENSRNOT00000086857 1 1 1 60 3 123417346 123417366 GAGATCTCATGATCGGGAAGG 60 123417383 123417406 CATCTAGACTACAATGGATGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058802 ENSRNOT00000079384 3 1 1 61 3 10355867 10355885 AGCAGGCTAACACAGAAGG 60 10355910 10355928 AGGAGTGAAGCCTCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061721 ENSRNOT00000080731 2 1 1 61 7 12102970 12102989 AACGACACAGAAGATTAGCA 57 12102928 12102946 GAACGCCTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073014.1 ENSRNOG00000005415 ENSRNOT00000007183 3 1 1 113 4 72523390 72523408 GCACTGTCCCTAAGATGCT 60 72523485 72523507 TCATACACTCCGTCACAGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058493 ENSRNOT00000088107 2 1 1 60 6 54346883 54346901 TCACCTGTGCATCAGTAGG 59 54346924 54346943 TCAGAACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035832.1 ENSRNOG00000055795 ENSRNOT00000084789 1 1 1 80 12 24091226 24091244 CTACTTCACCGTTTCCACC 58 24091287 24091337 GTGGGTGTGATATAGTCTGC 58 Novel Rattus norvegicus 81 SNORA7 ENSRNOG00000056323 ENSRNOT00000079576 3 1 1 60 6 145777896 145777914 AGGTACCCATTCCATTCCC 59 145777854 145777873 ATGTTGCAGAGTGTCTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000054533 ENSRNOT00000086318 2 1 1 60 1 225085011 225085030 CTCTCGGTGTTATGTCTTCG 58 225084970 225084988 GCGTCTGAGGATAGAACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.2 ENSRNOG00000039472 ENSRNOT00000060488 2 1 1 60 18 30556600 30556619 TCATCTCCATCAATGCTGAC 58 30556642 30556660 GCTTCGTAGTCTAATGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000059339 ENSRNOT00000089038 1 1 1 68 8 13869834 13869852 AGTTCTTTCCTGTTGGGTG 58 13869884 13869902 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003302.1 ENSRNOG00000058668 ENSRNOT00000090142 2 1 1 123 1 104052103 104052122 AGGAAAGCTACAGGGATAGG 58 104051999 104052017 TTGTTAGCACAGGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000057204 ENSRNOT00000088422 2 1 1 60 8 13878034 13878054 CAAATCTGAGCATCAGAAGGC 60 13877994 13878016 TCTCAGAACTATGGAGATCATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.2 ENSRNOG00000059160 ENSRNOT00000081495 1 1 1 100 5 163879669 163898846 ACTCTTCAGGGTTTCTTAACCT 59 163898907 163898925 ACATCCATGTACAGTGCCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054337 ENSRNOT00000078164 1 1 1 60 10 53921314 53921333 TGCTCAGTCAAAGAAGACAG 58 53921353 53921374 TATACCCTTGGCAGAAGATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052280 ENSRNOT00000090563 3 1 1 65 9 28372338 28372357 AATATGTACTGACGGCTGAC 58 28372292 28372312 CCACTACGACAAGTTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056414 ENSRNOT00000084714 3 1 1 87 9 19961953 19961971 CCGTGGCAGTATTGTAACC 59 19961884 19961904 TTTCTTACCTCATTTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067600.1 ENSRNOG00000028330 ENSRNOT00000016874 2 1 1 83 9 53617444 53617472 GCACTCTGAGGAAGATTATATTGAG 59 53617385 53617406 GACCAATCCCATATCCAATCTG 59 Novel Rattus norvegicus 81 AABR07067600.1 ENSRNOG00000028330 ENSRNOT00000016874 3 1 1 87 9 53617444 53617472 GCACTCTGAGGAAGATTATATTGAG 59 53617381 53617401 ACTTGACCAATCCCATATCCA 59 Novel Rattus norvegicus 81 AC120246.2 ENSRNOG00000054344 ENSRNOT00000088175 2 1 1 144 19 25775336 25775354 GAAGCTGCAATGGAAGCAG 60 25775163 25775182 CTTCTTGCTTGGTACCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA61 ENSRNOG00000052616 ENSRNOT00000091426 2 1 1 62 8 58229764 58229782 CTTCCCATGGGATCTCCAC 60 58229806 58229826 CAGCTTCAGTGTACTCTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058958 ENSRNOT00000091138 3 1 1 60 10 31643321 31643344 ACGATACAGAGAAGATTAGAGTGG 60 31643284 31643303 AGGCTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053344 ENSRNOT00000088020 1 1 1 60 9 100115224 100115244 AAGATTAGCATGGTCCCTGAG 60 100115184 100115203 GTTTCAATGGGATGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051873 ENSRNOT00000083457 2 1 1 60 2 206686724 206686742 GCTCTGTCTATGCTCAGTG 58 206686764 206686784 GCTCTGAGTGCTAAAGTAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 2 1 2 92 8 85605736 85605755 CTGCACATTTACGGATTGGA 59 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033943.1 ENSRNOG00000001675 ENSRNOT00000002277 1 1 1 63 11 45647554 45647572 GAAGGACTCTCACCTCCAC 59 45647600 45647618 TGAAGTGCATGAGTCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 3 1 1 60 6 133825650 133825669 ACCAATGATGAGATCTGGTG 57 133825690 133825710 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 3 1 1 73 17 43779502 43779520 GAGACAACAAGAAGACGCG 59 43779558 43779576 CTTGTTGAGCTCCTCATCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068355.1 ENSRNOG00000051904 ENSRNOT00000082949 2 1 1 95 9 101005210 101005228 ACTTAGCCCTGATGACTCC 59 101005394 101005412 TCCAGTACACTCAGAACGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA51 ENSRNOG00000055932 ENSRNOT00000085715 3 1 1 60 15 4063621 4063639 ACATCCTACACCTACCCTG 58 4063579 4063597 CACAATACAGACCAGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 3 1 1 60 15 24285162 24285181 ACTGATGATCACAGAGGTGC 60 24285202 24285222 GCATATCTGGAATCCAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097700.1 ENSRNOG00000057454 ENSRNOT00000077145 3 1 1 60 8 53361450 53361470 TGGACTTCTCCTCATCTTCTC 59 53361410 53361428 CGTCCAAGGAGATGATCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132671.1 ENSRNOG00000055680 ENSRNOT00000089745 1 1 1 80 8 36719013 36720581 CCTTCCTAGATGTCGTCTATGG 60 36718954 36718973 CCCAGATCCCATCTTCAGAG 59 Novel Rattus norvegicus 81 AABR07007092.1 ENSRNOG00000034090 ENSRNOT00000048196 2 1 1 60 1 280753917 280753935 ATCTTTAAGCTGGGCCTGG 60 280753875 280753893 GACATTGGTGGATGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_0730.2 ENSRNOG00000060951 ENSRNOT00000086267 2 1 1 80 3 66404640 66436586 GGCTTTCTAAAGGTGGTCCT 60 66403371 66403389 GCTGCCTACAAGGTAGAGG 60 Novel Rattus norvegicus 81 AABR07043247.1 ENSRNOG00000053972 ENSRNOT00000085796 2 1 1 81 19 26761157 26763068 GCTCAACAACGTAATGAAGTC 58 26763108 26763129 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059527 ENSRNOT00000090012 1 1 1 60 9 16072223 16072244 GGTACAGAGAAGATTAGCATGG 59 16072184 16072203 GAACGCTTTACAAATTTGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061820 ENSRNOT00000090296 1 1 1 60 9 105888623 105888641 TATGTCACATGGGCATCAG 57 105888581 105888600 AGGTCAGAGGATAGACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041892 ENSRNOT00000063645 1 1 1 60 4 120565979 120565998 CATCTGATCCTGTCTGATCC 57 120565938 120565956 CAGGCCAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060441 ENSRNOT00000085071 2 1 1 67 2 198623816 198623834 CTTATCCATTGCACTCCGG 58 198623865 198623883 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058423.2 ENSRNOG00000059053 ENSRNOT00000090876 1 1 1 81 7 116003786 116003805 ATTCGGTCTTCCCTCTCAC 59 116003723 116003743 AGATTTCCTGAGGAAGGAGAG 59 Novel Rattus norvegicus 81 AABR07034098.1 ENSRNOG00000052255 ENSRNOT00000089097 2 1 1 84 11 52408638 52408661 GATATACCTTCTTCGCTCCTC 58 52408574 52408592 TTTCTGTACCTGTTGAGGC 57 Novel Rattus norvegicus 81 AABR07001910.1 ENSRNOG00000051570 ENSRNOT00000078809 2 1 1 60 1 61872305 61872323 AGTGAATGTGCCAAATGCT 58 61872263 61872281 TGTGAACTGTCTGATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064061.1 ENSRNOG00000045967 ENSRNOT00000072431 2 1 1 60 6 62797542 62797561 AGGTGGTAGAGGACATTGAG 59 62797501 62797521 TCATCCTGTTTAAGCCAAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139873.2 ENSRNOG00000053098 ENSRNOT00000078792 2 1 1 80 3 73743767 73743790 ATCATCTATCTGATCACTGTGGG 60 73743709 73743730 GTACATGGGTGTTTGTAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059221 ENSRNOT00000083903 3 1 1 60 2 167059680 167059700 CTAAAGGGATTGCAAAGGTGG 60 167059640 167059661 TCTCTTCTCTGCTACCTATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 2 1 1 60 X 7050823 7050843 GAACCTTGTTGCTGAAATCCT 59 7050864 7050883 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058575 ENSRNOT00000081978 3 1 1 60 2 181089731 181089750 GCGCGATTATTGCTAATTGG 58 181089690 181089710 GAGATTAGCACAGTTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053697 ENSRNOT00000078649 1 1 1 60 17 48432334 48432352 GAGAAGATTAGCATGGCCC 58 48432376 48432394 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054598 ENSRNOT00000087639 2 1 1 60 2 260837332 260837351 CCCAAATAGAGGAGGACCTG 59 260837291 260837309 TGACAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012044.2 ENSRNOG00000056501 ENSRNOT00000077439 1 1 1 60 2 183573367 183573385 GGTTGTAAGCCACCATGTG 59 183573325 183573345 CAGTTAAGAGCACTTCCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 3 1 1 60 2 48263860 48263882 TCTAGCTGTAATATCTGTCACCC 59 48263902 48263920 AATCGCCAGATCATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058700 ENSRNOT00000080764 2 1 1 87 2 259883623 259883642 ATCTCTAGAAGCACTGCAGG 59 259883687 259883710 CACTGAGTATGGATATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058431 ENSRNOT00000077881 1 1 1 60 X 96801691 96801709 GCCACCTACAGGTAAAGCA 60 96801731 96801751 TTCTATGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051769 ENSRNOT00000079188 3 1 1 60 X 96455358 96455376 TGCAGTTATGGCTACTGTG 58 96455400 96455418 AGACAAGAGCCTCTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053464 ENSRNOT00000083738 3 1 1 60 1 201879170 201879190 TCACATGTGCATCAATAGGTG 59 201879211 201879230 GTCAGAACACAAGGGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.2 ENSRNOG00000054700 ENSRNOT00000085743 3 1 1 81 17 44538582 44538600 TGGAAGAGTGGTCTTGGAG 59 44533638 44533658 GCCTTATCATCATGCAAAGC 58 Novel Rattus norvegicus 81 SCARNA15 ENSRNOG00000055316 ENSRNOT00000087677 3 1 1 60 1 143360163 143360186 TTGGAGACTAAGACAATAGAGTCC 60 143360205 143360223 ATGTAGGAGGCTAAAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058734 ENSRNOT00000088369 3 1 1 61 3 151043620 151043639 CCTTGCAGAGTAACTCTGTG 58 151043578 151043602 CTTCTGACAAACCTAGACATAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056502 ENSRNOT00000079898 3 1 1 61 14 11337643 11337661 GAGAAGATTAGCATGGCCC 58 11337600 11337618 AAATATGGAACGCGTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0488.1 ENSRNOG00000051263 ENSRNOT00000077062 2 1 1 80 14 48633991 48634010 CATTGTGGTGAAAGTTGTCC 58 48630326 48633950 AGTTGGAGCACTATAAACCTC 58 Novel Rattus norvegicus 81 AABR07061462.1 ENSRNOG00000056316 ENSRNOT00000083740 1 1 1 81 4 126509353 126509374 CTCATTATCATGGGTTTCCTCC 59 126509415 126509436 TGAGACCAGAAACCAGAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061722 ENSRNOT00000082292 2 1 1 60 4 175979626 175979644 TGAGGGTCATAGGTGAAGG 58 175979584 175979608 GTGTTTGGATATTCTAACAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066624.1 ENSRNOG00000045990 ENSRNOT00000072423 2 1 1 90 9 12001482 12001505 AGTCTGCAAGTGACCTAGAG 59 12001411 12001429 TCTTCAGCCTTGATGGCTC 60 Novel Rattus norvegicus 81 AABR07061871.1 ENSRNOG00000030647 ENSRNOT00000052259 3 1 1 60 4 150199656 150199677 TCAGATGAATGATGGATCTCAG 58 150199696 150199716 GATTTCTGAATCATCCGACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 3 1 1 60 4 69970941 69970959 AGAAGTTAGACCACAGGGA 57 69970897 69970916 TCTTTGTTTAGCTCTGAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC111319.3 ENSRNOG00000059489 ENSRNOT00000088343 1 1 1 103 9 71296253 71296272 TGTATTACTCCAGCACTCAC 57 71296342 71296363 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015556.1 ENSRNOG00000047460 ENSRNOT00000075037 2 1 1 107 14 63307932 63307950 GACAGAGAAGGAGGGAAGG 59 63307843 63307862 TAATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106510.1 ENSRNOG00000036434 ENSRNOT00000054546 2 1 1 60 2 44897530 44897548 GGGTTAAGTAAGCAGCCAC 59 44897571 44897590 ATTAACAAGAAGACCCGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054510 ENSRNOT00000086615 3 1 1 66 10 63946019 63946038 CAGAGAAGATTAGCATGGCC 59 63945972 63945993 GAGCTATAGGAACAGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060481 ENSRNOT00000083805 1 1 1 60 1 116978573 116978594 CAACAGAAAGTCAAGAACAGGA 59 116978534 116978554 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114363.1 ENSRNOG00000057545 ENSRNOT00000090574 3 1 1 84 3 8432154 8432175 ATCTCACTCCTGGAATACTGAC 59 8432090 8432109 GAACAGGGCTCCCTTAGTC 60 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058610 ENSRNOT00000091228 3 1 1 60 2 101977084 101977104 AGTTCAGTTCATGGAAACCTC 58 101977126 101977144 AGCCAATTTCAATGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061226 ENSRNOT00000079052 2 1 1 61 2 93815207 93815225 GTGCTTTCTTCAGCAACAC 58 93815250 93815268 AGGCCATGTTACTGTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112093.1 ENSRNOG00000060743 ENSRNOT00000091860 2 1 1 60 1 216773923 216773943 GCTTCAGTAATAAAGGCCTCG 59 216773883 216773903 AGAGACACATAAAGGACCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112093.1 ENSRNOG00000060743 ENSRNOT00000091860 3 1 1 60 1 216773924 216773945 TTGCTTCAGTAATAAAGGCCTC 59 216773885 216773904 AGACACATAAAGGACCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056479 ENSRNOT00000085127 2 1 1 60 10 110408880 110408899 AAGGGTAAAGGAAGTCTCCA 58 110408922 110408940 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054350 ENSRNOT00000088882 3 1 1 60 2 166806861 166806880 TACATCTGTAGGTGGCAGAG 59 166806820 166806839 TTCACAGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041913 ENSRNOT00000063666 3 1 1 67 14 75478541 75478560 CTCATACCACCCTTAACACG 58 75478590 75478608 CTAACCAGGGACAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118794.1 ENSRNOG00000059865 ENSRNOT00000079215 3 1 1 80 16 2438259 2438278 CAGTGAAAGCCGTGTTAGTG 60 2438319 2438611 ATCGAAGAAGCAGTATGTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055988 ENSRNOT00000082502 2 1 1 60 3 158727408 158727429 TGTCACATGAGCATAAGTAGGT 59 158727447 158727468 AGAACACAGAGTGTAGACATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.2 ENSRNOG00000055573 ENSRNOT00000082729 1 1 1 81 7 142890324 142890806 TGCGACTAAAGGAAGGGAG 59 142890261 142890279 TTGACCTGAGCATTCTGGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058499 ENSRNOT00000090005 2 1 1 60 2 60002231 60002252 TGGCTACAACATCAATCATCTG 59 60002272 60002291 TAGCCAGTCAGATCAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001497.1 ENSRNOG00000018935 ENSRNOT00000025594 1 1 1 60 1 47587950 47587971 CACCATTTCTGAAATCAAGACC 58 47587866 47587885 TTCATCTTTCAGGGACTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061470 ENSRNOT00000085919 3 1 1 60 2 185663514 185663532 GGAGGAAGCATGATCTCAG 57 185663553 185663574 TCTGAAGTGCAATGGATAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061802 ENSRNOT00000089067 3 1 1 60 1 244839416 244839435 TGTTCCCTTATTGATTGCCA 58 244839458 244839476 GAACATCCCTGTCTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057608 ENSRNOT00000079396 1 1 1 60 17 90659471 90659489 GGATGACCTTCACATTGGA 57 90659429 90659450 AGCACAGCTATTCATATACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057608 ENSRNOT00000079396 3 1 1 60 17 90659468 90659487 ATGACCTTCACATTGGAGGA 59 90659427 90659448 TGAGCACAGCTATTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010370.1 ENSRNOG00000054361 ENSRNOT00000086680 2 1 1 61 2 133290137 133290156 AAGAAGTTAGACCACAGGGA 58 133290180 133290200 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 3 1 1 62 X 100207597 100207615 CTACTACCACCAATGCCAG 58 100206262 100206849 TCTCGACAATCTTTCCTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050561.1 ENSRNOG00000057128 ENSRNOT00000087911 2 1 1 98 5 169899626 169899646 ATAAGCCTGCTTGTCTTGC 59 169899713 169899731 TTTCCCATCAGAGACCGTG 59 Novel Rattus norvegicus 81 AABR07016975.1 ENSRNOG00000053595 ENSRNOT00000077659 3 1 1 81 15 5652368 5652387 TTTGTGAACTGCAAGTTCCC 59 5652304 5652329 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060691 ENSRNOT00000078391 3 1 1 61 14 44221184 44221207 GTACTAACACTGGAACATACAGAG 59 44221146 44221167 ATTGAATGTCATCCTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004949.1 ENSRNOG00000046444 ENSRNOT00000071554 1 1 1 69 1 171520071 171520090 CAGCTGTAAGGCAATTTCTC 57 171520021 171520039 CCCAGGGATAGTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004949.1 ENSRNOG00000046444 ENSRNOT00000071554 3 1 1 75 1 171520078 171520096 GAGATCCAGCTGTAAGGCA 59 171520021 171520039 CCCAGGGATAGTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048387 ENSRNOT00000074592 1 1 1 60 17 53916382 53916402 CTGAACACATCCCATCTTGTC 59 53916422 53916442 AGTAATAACCAGGCTTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051807 ENSRNOT00000090392 1 1 1 74 12 695175 695193 TGAGGCTGCTATGTCACAC 60 695119 695137 GGCTACACCGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056917 ENSRNOT00000078229 2 1 1 60 2 219485064 219485082 GGGAGATGGCATGATATCG 58 219485022 219485042 TTGGAGCACATTGAGTAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 1 1 1 66 12 53933 54665 TAAGTTCAGCTCCCAGAGG 58 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000051604 ENSRNOT00000079645 2 1 1 61 14 45212954 45212978 GATACAGATAAGATAAACATGGCCC 60 45212996 45213015 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059573 ENSRNOT00000088271 2 1 1 60 2 173210278 173210298 CCTATAGGCTATGCAAGTGTG 58 173210316 173210338 CTTTCTTCTGTACCTACTGTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034393.1 ENSRNOG00000052264 ENSRNOT00000089347 3 1 1 80 11 68060820 68060843 AGATTTCACCTCACATGCGA 60 68060759 68060779 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07059877.1 ENSRNOG00000039626 ENSRNOT00000060755 2 1 1 60 4 39727897 39727915 GCTCAAAGAAGTGGACTGG 59 39727855 39727874 TGTTGGAGAAGTGGCTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.2 ENSRNOG00000060913 ENSRNOT00000082001 3 1 1 61 5 25773848 25773871 CAACAGATAGAGGCCTTATATCCA 60 25773894 25773914 CCTGTGGTCTAACTTCTTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058899.1 ENSRNOG00000053802 ENSRNOT00000086780 2 1 1 89 7 142062871 142062889 GGTGCAGAACTGGTTTGAC 59 142062944 142062962 CCTTGAGTGTCCTCTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017197.1 ENSRNOG00000048492 ENSRNOT00000070931 2 1 1 114 15 17096230 17096250 TTGGACCAGAGAAACACCT 59 17096134 17096158 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059173 ENSRNOT00000083106 3 1 1 61 1 186497739 186497757 GTGTCAGTAGGTGGCAGAG 60 186497696 186497715 GTTCACAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000055001 ENSRNOT00000089120 3 1 1 60 1 174133775 174133796 CTACTGACCTTATTCACTGGCT 60 174133816 174133835 TGTCACTAACCTGGTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD25 ENSRNOG00000059148 ENSRNOT00000082509 2 1 1 62 1 224921637 224921655 ATGCCCTATGATGAGGACC 59 224921677 224921699 CAGAGTTACTTATCCTCACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045172 ENSRNOT00000070439 3 1 1 60 3 137613170 137613189 TGGAAATAAACAGGTTCGGG 58 137613207 137613230 CTCAGAGTGTACTTAATTTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062912.1 ENSRNOG00000040076 ENSRNOT00000061631 3 1 1 62 6 14350372 14350392 CAAACAATCCGAAACATAGCC 58 14350417 14350435 CTGCCTTTCTGGACAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0674.4 ENSRNOG00000051119 ENSRNOT00000076605 3 1 1 80 X 66528915 66528935 AATAGCTGAATTGAACCAGCC 59 66528977 66534947 CTCAACTTGGGAAGCACTG 59 Novel Rattus norvegicus 81 SNORA32 ENSRNOG00000058808 ENSRNOT00000077244 3 1 1 64 1 1115904 1115922 ATTTGCTGTGGACATGACC 59 1115949 1115968 GCTAGACAAGTAGCATCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0667.2 ENSRNOG00000051325 ENSRNOT00000076454 3 1 1 60 X 65804327 65804347 GAAATAAGGCTCCCTCAAGTG 59 65804369 65804387 CGTCTTCCATTCCTCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061336.3 ENSRNOG00000059023 ENSRNOT00000083216 3 1 1 61 4 116935984 116936002 AGTTTCTGGGCTGAAGTCC 60 116935941 116935962 AGACTGCAGAAGTTGAATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057948 ENSRNOT00000086874 3 1 1 64 1 200157735 200157753 AGATCCCAGCAGTACATGC 60 200157781 200157799 TATCCTTGTACAGGGACCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055162 ENSRNOT00000080902 1 1 1 60 1 264686110 264686129 CAGGAAGATTAGCTTGACCC 58 264686152 264686170 TTATGGAACGCGTCATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053785 ENSRNOT00000085977 1 1 1 60 1 243119344 243119362 CCACAGAAGAGCACATTCC 59 243119302 243119321 TCTCTGGTACCAACTACGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056238 ENSRNOT00000084949 2 1 1 60 1 80155796 80155815 GCTACCATGATCATGAAGGG 58 80155838 80155856 CACATCTGGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054583 ENSRNOT00000079025 2 1 1 61 2 155488502 155488520 GAGAGGCTAGGTCTATGCT 58 155488459 155488482 GTTAGGCTACTAATCATTCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0026.4 ENSRNOG00000059066 ENSRNOT00000089400 3 1 1 83 20 2589714 2602376 GGCTCCTTGAGGATATTTCTC 58 2589651 2589669 AAATGACTGCAGTCTCCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060227 ENSRNOT00000087216 3 1 1 60 1 53435023 53435041 TGGAGTGGATGATCCTGAG 58 53434981 53435000 CAAATTTGCGTGTCATCCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000061306 ENSRNOT00000082268 2 1 1 60 2 550733 550752 CATGGACACTATGAACGCAC 59 550775 550793 TCTCAGATAGCTGTAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061087.1 ENSRNOG00000052612 ENSRNOT00000084103 1 1 1 60 4 103761859 103761877 TTGTGATGACTCAAGCTCC 58 103761817 103761835 GAGATGGAAGCTGACTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053716 ENSRNOT00000085818 3 1 1 60 14 19919462 19919480 GGAATGGCTTCTGTGTCAC 59 19919420 19919438 TAGACATAGCCTCCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 2 1 1 227 1 204320863 204320881 TTCATTCCCTGTACAGCCT 58 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000054881 ENSRNOT00000084219 1 1 1 63 2 234693459 234693477 TGAGGTTTATCCGAGGTGC 60 234693414 234693433 ACAGCTGATCTTGTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040480.1 ENSRNOG00000057407 ENSRNOT00000085348 1 1 1 80 X 102035748 102035769 TGAAGAAAGAGAACCCAAACTG 59 102032088 102035708 CATCATTGGCAGACATGGAC 59 Novel Rattus norvegicus 81 AABR07043287.1 ENSRNOG00000057292 ENSRNOT00000073554 1 1 1 80 19 27099259 27101167 GCTCAACAACGTAATGAAGTC 58 27101207 27101227 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 AABR07047011.1 ENSRNOG00000008861 ENSRNOT00000011720 1 1 1 83 5 15087575 15087594 GTTACTTCACCCTACTGGGA 59 15087640 15087660 TCTCAGGAGCTTCTGTCTG 58 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000055060 ENSRNOT00000082784 3 1 1 61 1 116719954 116719974 CAACAGAAAGACAAGAACAGG 58 116719913 116719934 CCTCAGCATAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055219 ENSRNOT00000089621 2 1 1 60 1 90959760 90959782 GGTTATGTGAATAACTGCTCTCC 59 90959722 90959741 TGGGAAGAGCAGCTATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024932.1 ENSRNOG00000059091 ENSRNOT00000078734 2 1 1 97 16 22111031 22111049 TTTCACCATGCCATTTCCA 58 21955232 22110970 GGTGTCAAGCCATACTCTG 58 Novel Rattus norvegicus 81 AABR07024932.1 ENSRNOG00000059091 ENSRNOT00000078734 3 1 1 98 16 22111032 22111050 CTTTCACCATGCCATTTCC 57 21955232 22110970 GGTGTCAAGCCATACTCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051717 ENSRNOT00000089301 1 1 1 60 4 101873465 101873484 ACACATGTGTCAATAGGTGC 59 101873424 101873445 GGTCAGAATACTGATCAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058378 ENSRNOT00000084332 2 1 1 60 2 83500176 83500195 ATGTCCATTTGCTGATCACC 59 83500218 83500236 TAAGCATCCACCTAGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058378 ENSRNOT00000084332 3 1 1 60 2 83500177 83500195 TGTCCATTTGCTGATCACC 58 83500218 83500237 TTAAGCATCCACCTAGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.5 ENSRNOG00000047240 ENSRNOT00000072474 1 1 1 60 1 121187530 121187549 CTGATCAGTCAGGCTACTGG 60 121187489 121187508 GCTTTGGTTATACCCAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060547 ENSRNOT00000091843 2 1 1 60 14 2163625 2163647 GGAACGATACAGAGAAGATTAGC 59 2163587 2163605 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1411.1 ENSRNOG00000053703 ENSRNOT00000089765 3 1 1 106 7 143291047 143291169 AGTCAACATCTCCGTGGTG 60 143290959 143290977 CACCATAGGAGAAGCTGCT 59 Novel Rattus norvegicus 81 AABR07015055.1 ENSRNOG00000056747 ENSRNOT00000088111 3 1 1 61 14 46523913 46523931 AGAGGGTGTAAATCTCGCG 60 46523956 46523974 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113773.2 ENSRNOG00000058178 ENSRNOT00000090224 2 1 1 181 1 255170931 255171109 CCTGATTCGGCTAGAATTATATCAG 59 255170485 255170505 CTCTTCCTCTTCTTCCTCCTC 59 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000055611 ENSRNOT00000084467 1 1 1 60 1 88411713 88411732 TGCCATAGAAACTGTCATCC 58 88411672 88411690 CTGTGAGTAGAGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017141.1 ENSRNOG00000054783 ENSRNOT00000073371 3 1 1 60 15 12723338 12723359 GGTAGATGGCTCTGTAAATACC 58 12723299 12723319 CTGCCTGTATTTCCTCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053253 ENSRNOT00000088598 3 1 1 60 1 72978177 72978195 CGTAGACTACCTTCTCCCT 57 72978135 72978156 GCTCTAATGGAGGAATACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054792 ENSRNOT00000082490 3 1 1 62 1 116729373 116729394 ACAACAGAAAGTCTAGAACAGG 58 116729332 116729353 GATAAGCATGGATCAATTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057841 ENSRNOT00000085645 3 1 1 60 2 112669035 112669055 GGCTAAACTTTGTCCTTTCCC 60 112669074 112669095 CCCATTATCACAAATTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.1 ENSRNOG00000054551 ENSRNOT00000083317 3 1 1 60 1 174133689 174133707 ATGTGAACTGAGGGAACCT 58 174133731 174133749 TGAGGCAACAAGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061926 ENSRNOT00000091332 1 1 1 60 2 53669290 53669308 CATGCTTCATGTGTCCTGC 60 53669332 53669350 AAGACCAGGGAAGCTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054759 ENSRNOT00000086068 2 1 1 60 1 121575472 121575492 CAACAGAAAGTCAAGAACAGG 58 121575513 121575532 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 3 1 1 60 1 213460769 213460788 AAACCTACCCTGTGTACACC 59 213460810 213460829 ACCCATTCACAATACAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053119 ENSRNOT00000091358 2 1 1 60 14 62552044 62552062 AGGTGGCAGTGAAGTAAGG 59 62552083 62552104 CATTCAGGTACTCACAGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058717 ENSRNOT00000090801 3 1 1 60 14 81845099 81845119 ACTAAGACCAGAAGGACACAG 59 81845059 81845078 ACGAATCTGCATGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043279.1 ENSRNOG00000058517 ENSRNOT00000087468 1 1 1 80 19 26985602 26986791 ATCCAAGAACAACAGGCCA 60 26986834 26986853 ATTGACATGACCACCTCCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054503 ENSRNOT00000078234 1 1 1 61 14 104467084 104467102 GAAGACGCAGAGATCAGCA 60 104467041 104467060 ACATGGTATGCTTCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061535 ENSRNOT00000089253 2 1 1 60 2 176306156 176306178 AGGACTATCTTCCCAGAATACAG 59 176306118 176306136 CGCAGCAACTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058469 ENSRNOT00000087939 3 1 1 60 5 63700909 63700933 GATATAAGGATGATCAGAGTGTGAC 59 63700949 63700969 GCTGAAACAACCTTAGTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565989 ENSRNOG00000013940 ENSRNOT00000047544 2 1 1 80 2 127916269 127916289 GCTTTAGAGTATCACGTTGGG 59 127916328 127941961 AACATTTGAACTGCTGACAGAG 60 Novel Rattus norvegicus 81 AABR07061801.2 ENSRNOG00000060820 ENSRNOT00000083660 2 1 1 80 4 144917119 144917155 AGAAATCAGGAAACAACCCT 57 144917196 144917216 CTTGTATTCTGTTGGTGATGC 58 Novel Rattus norvegicus 81 AABR07068248.1 ENSRNOG00000055670 ENSRNOT00000078129 3 1 1 80 9 92625500 92625522 TCTGACTTACAAGAGTGAAGCT 59 92625439 92625458 TGCTGTATCATGCTGAACCT 60 Novel Rattus norvegicus 81 AABR07014804.1 ENSRNOG00000024829 ENSRNOT00000039626 1 1 1 60 14 32257922 32257943 CAGGGTTCACTAAAGAAACTGG 59 32257961 32257982 TCATGTTCACCTCTTCAATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057154 ENSRNOT00000079164 2 1 1 60 1 251643636 251643657 TAGAACCAACAAACAAGCTCTC 59 251643597 251643618 TGTATTCCTCTCCCATTCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058302 ENSRNOT00000090879 1 1 1 67 14 45942017 45942036 TAGAGGCTTTACAGGTGTGC 60 45942066 45942084 TAGTCTTTCACCTCCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2049.3 ENSRNOG00000054907 ENSRNOT00000089421 2 1 1 60 2 185438506 185438527 AAATGAAATCCGTGTGACTGAC 60 185438467 185438488 GGTCTTAGATTTGACCTTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045148 ENSRNOT00000070415 2 1 1 60 14 9278931 9278949 ATCTCGTAAGCTGAGCAGG 59 9278889 9278909 GTAATATGGTGACCTCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044505 ENSRNOT00000069772 2 1 1 60 14 34698461 34698481 CCCATCTCATCTGATCTTGGA 59 34698502 34698521 CTCCCACTCAAGTACTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059914 ENSRNOT00000082418 3 1 1 60 5 76168180 76168199 CCACTACAATACAGAGCCAC 58 76168139 76168159 AGAGGTAGAAGATGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.4 ENSRNOG00000057972 ENSRNOT00000089870 1 1 1 80 4 114822760 114822783 CTGATGGTAGTGGATAATGAAGAG 59 114822566 114822721 ACTGTCTTCATCCAGCCAG 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052601 ENSRNOT00000079689 1 1 1 60 2 161553369 161553387 TCATGGACACTTCGAACCC 60 161553411 161553429 CTCAGACAGGTGTAGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058502 ENSRNOT00000083630 1 1 1 60 2 107628977 107628997 TGTCACATGTATGTCAGGAGG 60 107628937 107628960 CATTCAGATAGGCAGAACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058502 ENSRNOT00000083630 2 1 1 60 2 107628980 107628999 TGTGTCACATGTATGTCAGG 58 107628939 107628960 TTCAGATAGGCAGAACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058835 ENSRNOT00000081774 1 1 1 60 3 163446934 163446954 GTTGATGTGGCTGATAATGTC 58 163446974 163446994 GACTGATTGACTAGCTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060169 ENSRNOT00000080034 1 1 1 60 1 59770154 59770175 ATACAGAGGAGATTAGCATGGC 60 59770195 59770214 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052019 ENSRNOT00000089598 3 1 1 60 1 224887133 224887152 ATTTGACATCCCATTTGGCT 58 224887092 224887111 AAACTTGCTTATCCAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 1 2 2 89 18 14776136 14905595 GCCTGGATGTTCAAATTGGG 60 14905647 14905665 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059609 ENSRNOT00000089753 2 1 1 61 2 96521607 96521625 CTGTCAGTAGGTGGCAGAG 60 96521648 96521668 TATTCATGGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060575 ENSRNOT00000080664 1 1 1 60 12 6108553 6108573 AGTGAACCATATACACAGAGC 58 6108513 6108531 ATTCTGAGCACTCGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052482 ENSRNOT00000082829 1 1 1 61 12 30182230 30182248 AGAGGCCATGTCTATGCTC 59 30182270 30182291 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035194.1 ENSRNOG00000055786 ENSRNOT00000087840 2 1 1 80 12 6629879 6630226 CTCTTTCAGGAACATGAGAAGAG 59 6629821 6629843 CCTCATACTCTGCTTCATTATGC 60 Novel Rattus norvegicus 81 AABR07069324.1 ENSRNOG00000052334 ENSRNOT00000092214 1 1 1 114 8 17562177 17562195 CTCAAGGGACTGTCTCCAG 59 17562079 17562099 CTGTTCGTTCACACTTGGG 59 Novel Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 3 1 1 61 15 109346027 109346048 CAAAGCAACACTAACTTCTGGA 59 109346070 109346089 TTCTAAGCAAACACAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061673 ENSRNOT00000085838 3 1 1 84 5 168053587 168053605 ACAAGGTGGTTTCCCAGAG 60 168053653 168053671 GTTAAGTTTCCCACGCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009638.1 ENSRNOG00000030152 ENSRNOT00000043933 1 1 1 60 2 106702867 106702886 CACAACGGTTAAGAACAAGG 57 106702826 106702847 CTTCTCAGAAACATAGATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058969 ENSRNOT00000081128 1 1 1 69 5 164201035 164201054 GCTCCAGTAGCACATATCCT 59 164201086 164201104 TTATCCTTGTGCAGAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 3 1 1 60 5 6800272 6800291 AGTCGTACTGTAGCTGTTGG 60 6800314 6800332 ACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047522.1 ENSRNOG00000056724 ENSRNOT00000091648 1 1 1 60 5 36237291 36237310 CTCATCAGTAAGAGCACTGG 58 36237250 36237271 GTGGTTGCTGGAAATTTAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.3 ENSRNOG00000050314 ENSRNOT00000072390 1 1 1 60 2 231875230 231875249 CACTTAAACGTGGTTGTCCT 59 231875272 231875290 CACCCAAACATGGAAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 1 1 1 63 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634326 107634344 CTTGGCTTAGCCAGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000060276 ENSRNOT00000081894 3 1 1 61 2 189311889 189311907 CTAAAGGCGGGAAACTCGA 60 189311846 189311865 GGGAGAGCACAAACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053305 ENSRNOT00000083473 1 1 1 62 1 254469983 254470001 CGAGGCAGAGAAGATTAGC 58 254469939 254469959 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049348.1 ENSRNOG00000008914 ENSRNOT00000011831 2 1 1 96 5 117973306 117973326 ACAGACAATTACAATGGGCTC 59 117973381 117973404 GTGATTCATTAGGAACATGGCA 59 Novel Rattus norvegicus 81 Rn60_X_0771.2 ENSRNOG00000055485 ENSRNOT00000080128 3 1 1 80 X 77065754 77073615 GCTAATGCTTCTAAGGTCTCTG 59 77065695 77065715 GACAGTGGCTTTATCATCCTG 59 Novel Rattus norvegicus 81 SNORA18 ENSRNOG00000059407 ENSRNOT00000089077 2 1 1 60 2 217476725 217476744 TTTGAGGTCTATCCCGATGG 59 217476766 217476785 ATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017737.1 ENSRNOG00000059001 ENSRNOT00000085402 1 1 1 76 15 30440792 30440810 TTCACTAGTGGTCCTGTGG 59 30441022 30441040 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055090 ENSRNOT00000080855 2 1 1 61 7 102030534 102030552 ATGCTTACTTTGGCAGCAC 59 102030491 102030509 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060014 ENSRNOT00000091246 2 1 1 60 9 60527137 60527159 TTAGAAGCAGGGAGATAAGACAG 60 60527176 60527197 AATAAGAGGGTGATTTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070559.1 ENSRNOG00000054463 ENSRNOT00000081474 1 1 1 80 8 74982447 74982465 TTTCACAGAACTCCCGTCC 60 74982504 74982529 TCTACCTACAGGTAAAGTCAACAG 60 Novel Rattus norvegicus 81 AABR07001807.1 ENSRNOG00000056478 ENSRNOT00000090895 2 1 1 82 1 58344903 58345123 GGGACCACAGAAATAGCAG 58 58344839 58344857 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061887 ENSRNOT00000079428 2 1 1 60 9 17933206 17933225 GAAGAGGATGACCTTCCCTG 60 17933247 17933266 CTACTCGTACACCCTTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043884 ENSRNOT00000069151 3 1 1 60 9 15728141 15728162 ACCTGATCTTGTCTCATCTCAG 59 15728102 15728120 CCCATCCAAGGACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050116.1 ENSRNOG00000056863 ENSRNOT00000081107 3 1 1 60 5 152070725 152070744 CAGATGAGAATCCACAAGCG 59 152070684 152070705 TCTGCTTAACAATCTCAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029742.1 ENSRNOG00000003214 ENSRNOT00000004285 3 1 1 81 10 48988104 48988124 GAAATGAAGTATGAGCCGCTG 60 48988167 48988186 GAACTACGCCCATACAGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057287 ENSRNOT00000086949 1 1 1 60 1 184390201 184390219 GTGTCAGTAGGTGGCAGAG 60 184390159 184390179 TGTTCCTAGGTCTACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000051969 ENSRNOT00000079223 3 1 1 61 1 48030483 48030501 TGCCATGATCTGAAGAGGG 59 48030440 48030463 CTGTTCAGCCATTTCATATAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060321 ENSRNOT00000084828 2 1 1 69 1 189016567 189016585 GTGTCAGTAGGTGGCAGAG 60 189016516 189016536 CTATTCAGATGTTCGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042226.1 ENSRNOG00000058521 ENSRNOT00000088194 3 1 1 83 X 150660901 150666257 CATATAAGTTACACGGCAGCA 59 150660838 150660857 CACACTCATCAGTCACAAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000048971 ENSRNOT00000074679 2 1 1 60 1 217417675 217417694 GCCTAGTCTTAGCTGATCTC 57 217417716 217417735 CCCATACAAGTGCTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059853 ENSRNOT00000086327 1 1 1 60 6 73437908 73437926 GAGAAGATTAGCATGGCCC 58 73437866 73437884 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691843 ENSRNOG00000058174 ENSRNOT00000090742 3 1 1 60 3 77365117 77365138 ACTCATCTTTACCTATGTCCCA 59 77365078 77365099 CAGAGCAAATACCTTGTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.1 ENSRNOG00000053459 ENSRNOT00000081806 2 1 1 69 15 29246144 29246162 TTACTCCTAGGCCTTCACC 58 29217582 29217600 GTTTCACCTGTTGCTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058615 ENSRNOT00000085421 3 1 1 60 1 197983403 197983427 GATACAAGTAAGATTAGTATGGGCC 59 197983367 197983386 GAATGCTTCACGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.4 ENSRNOG00000052896 ENSRNOT00000077849 1 1 1 80 15 31469996 31470192 AGATTTGCTGGGTGAAAGGA 60 31470234 31470253 TCAGAACAGAACTGGTTCCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057771 ENSRNOT00000091718 2 1 1 63 13 72734479 72734497 AGAGATCAGCCAGCATGAC 60 72734434 72734453 AAACGTGTAACACTTCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055135 ENSRNOT00000080310 2 1 1 127 10 93386325 93386344 ATAAGCTCTGCTGTGATCAG 58 93386434 93386452 ACTACCACAAGTTACACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003017.1 ENSRNOG00000040273 ENSRNOT00000013741 3 1 1 60 1 93242187 93242210 CAAATATCATCCAGGTTACTTCGG 60 93242226 93242247 GTTCCTCTTCAAGTGGTAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0843.1 ENSRNOG00000051354 ENSRNOT00000076759 2 1 1 83 13 79330638 79339737 CATTGATCTGGATGTGTCTCTG 59 79339781 79339799 ACCAGGCAGGAACTAACTG 59 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000058803 ENSRNOT00000087736 3 1 1 61 1 56873040 56873061 GACAACAGAAAGTCAAGAACAG 58 56873000 56873019 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 3 1 1 60 4 126071146 126071169 GTACAACATAGAGAAGGATATCGC 59 126071109 126071130 GTTGTACTTCTTGTCAAACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.1 ENSRNOG00000055428 ENSRNOT00000087773 2 1 1 60 4 101883024 101883042 GGGTTATTGATGCTCTGCT 58 101883176 101883194 ATGGAGACTGGGTCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061022.2 ENSRNOG00000061699 ENSRNOT00000085205 2 1 1 60 4 102876041 102876059 ATCCAGATGACCCAGTCTC 58 102876081 102876101 TAATAGTGACTCTGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017635.2 ENSRNOG00000061833 ENSRNOT00000082167 1 1 1 72 15 29443322 29443340 TACTCCTAGGCCTTCACCT 59 29443131 29443149 CTTTGTTTGACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056935 ENSRNOT00000078581 2 1 1 60 13 2838458 2838478 ACAAGGGTATACGAGTAGCTG 59 2838498 2838518 GGACCTTGAGAACTTGTTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000076115 1 1 2 90 X 73425475 73426375 GTGCCTGAAGACATTGGTC 59 73426429 73426447 TACTACAGCAACAGTGGCA 59 Novel Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 1 1 1 106 15 29446163 29446181 CAGAAATGCAGTGCCTGAG 59 29402557 29402575 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AC095959.1 ENSRNOG00000058957 ENSRNOT00000079940 3 1 1 60 3 78134229 78134248 AAAGCTCTGTCTACTTGTGG 58 78134188 78134207 TACATGGGACAAAGAACGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020815.1 ENSRNOG00000058034 ENSRNOT00000078185 1 1 1 60 13 42220346 42220365 CTCCGACACCTTCTTCTACC 60 42220387 42220406 AGAAGACACGTTGTAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059255 ENSRNOT00000079074 2 1 1 63 20 45357216 45357239 ACTAGAGAAGTTTCTCTGACTGTG 60 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052663 ENSRNOT00000086940 3 1 1 65 2 97060876 97060895 ACTAATTTGGAACCCGAGGG 60 97060830 97060848 AATTTGCGTGTTCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064690.1 ENSRNOG00000060564 ENSRNOT00000092179 2 1 1 60 6 90683512 90683532 TGTATTTCCAGAAGTTCCCAG 58 90683472 90683491 TCTTACAACTGAGACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Telomerase-vert ENSRNOG00000054124 ENSRNOT00000090594 3 1 1 84 4 150151443 150151462 TGTTATAGCTGTGGGTTCTG 57 150151378 150151397 CATGTCTGAACTTTCCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021527.1 ENSRNOG00000061773 ENSRNOT00000090371 3 1 1 67 13 76595610 76595630 GGGCTGTTGATACAATTTCTC 57 76595657 76595677 GAGTAGGATATTGACGATGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054615 ENSRNOT00000077466 2 1 1 60 13 5099890 5099908 CCAGTCTTCACTCAAGGGT 59 5099929 5099950 GCTTGTTTGGAGATTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054343 ENSRNOT00000088667 1 1 1 60 13 98915007 98915029 GGAACGATACAGAAGAGATTAGC 59 98914969 98914987 CTTCACGAATTTGCGAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056985 ENSRNOT00000091798 1 1 1 72 5 129142754 129142772 ATGAGGTTTATCCGAGGCG 60 129142700 129142718 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000052115 ENSRNOT00000080700 3 1 1 60 10 56272256 56272274 GCAACTTGGAAGAAAGCCA 59 56272214 56272235 GGAAACAAGTATTCCTTGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018062.1 ENSRNOG00000036382 ENSRNOT00000054499 3 1 1 62 15 38054892 38054911 CATCTCTGGGCGAGTATCTC 60 38054936 38054954 AAGGCTCAGAGGTCTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 3 3 4 137 9 81644543 81644561 CTCCAAAGCCAAGGATCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045510 ENSRNOT00000070777 3 1 1 61 20 37200835 37200853 TAAGCAGGATCAAGCCTGG 60 37200875 37200896 AAGAGCACATGGTATTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058385 ENSRNOT00000091926 2 1 1 78 3 80018735 80018753 GTCAATGTTGTTGGCAGAC 58 80018795 80018813 CTCGTCATCTTCTTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000053634 ENSRNOT00000088281 3 1 1 60 13 77065436 77065457 ATCCTACATAAACATGGAGGTC 58 77065477 77065496 GAACGATCAGACTTAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021840.2 ENSRNOG00000048479 ENSRNOT00000075519 2 1 1 60 13 94942051 94942070 GCAGCAATTGTTCTTTGGTC 59 94942092 94942111 CTCTTCGGTCTTTCAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021840.2 ENSRNOG00000048479 ENSRNOT00000075519 3 1 1 60 13 94942051 94942069 GCAGCAATTGTTCTTTGGT 57 94942092 94942111 CTCTTCGGTCTTTCAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041453.1 ENSRNOG00000055211 ENSRNOT00000084149 1 1 1 61 X 130664068 130664086 CCAGCATTTGTTGTCACCC 60 130664023 130664042 GAGATTTCACCTCACACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051939.1 ENSRNOG00000054249 ENSRNOT00000088418 1 1 1 60 3 29600429 29600450 GCTTTGACTAGAGTGACTAGTG 58 29600470 29600489 TCAGTCTCTTCTGTCATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052410 ENSRNOT00000087205 1 1 1 60 5 72315309 72315329 CACATGTGCATTAGTAGGCTG 60 72315269 72315289 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029809.1 ENSRNOG00000060742 ENSRNOT00000083485 1 1 1 80 10 52478492 52478514 AGATTTCACCTCACATGCG 58 52478430 52478449 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061274 ENSRNOT00000077104 3 1 1 61 13 74169747 74169766 TGGAACAATACAGAGCAGAC 58 74169705 74169723 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057424 ENSRNOT00000080955 1 1 1 82 7 70150280 70150298 TACAGGCAGTACAGGTGTG 59 70150216 70150234 ACACTGAGCATAGACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058985 ENSRNOT00000083032 2 1 1 60 13 109802335 109802354 AGTCTCCATTGAGGAAGACG 59 109802377 109802395 CATACCCTGACCAGGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044905 ENSRNOT00000070172 3 1 1 60 3 110116756 110116774 TGAATGTGCCCAATCTTGC 59 110116796 110116816 CAGATATTAACAAGGCCCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 1 1 1 60 7 108551263 108551284 TCCCTAAGCCAAATAAGTCTCC 60 108551223 108551242 ACGCCTTTGGGTAACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031184.1 ENSRNOG00000056808 ENSRNOT00000091534 3 1 1 80 18 3617477 3617496 CCAACAAATGTTCCACAGCT 59 3617412 3617434 CTGCCTTACATTGCGTGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058098 ENSRNOT00000091380 2 1 1 60 19 5590757 5590779 GATACAGAGAAGATTAGCATGGC 59 5590719 5590737 GAACGCTTCACGAATATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 1 1 1 60 17 52755944 52755962 GAAGATTGTGGTCCTCCTG 58 52755985 52756004 GAGTTGCTCAATGACATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057019 ENSRNOT00000079615 2 1 1 60 19 20431987 20432011 GTGATCTATCTGTCTGTGAAATCTG 60 20431951 20431969 AGCTGAACTAGATCAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054025 ENSRNOT00000082993 2 1 1 60 7 136948372 136948392 GGATAGCATGGAGATTAGCCT 59 136948332 136948350 GACACTTCACAGAATTGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043978 ENSRNOT00000069245 2 1 1 60 18 32756123 32756145 GTCTGATCTCAGAAGCTAAACAG 59 32756085 32756105 CCAAGTTGTGGGAATACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054968 ENSRNOT00000090088 1 1 1 60 7 15051514 15051534 GAGACACCATGATCATGAAGG 59 15051474 15051495 CATCCCAAGTACAGTAGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.1 ENSRNOG00000053490 ENSRNOT00000071850 1 1 1 174 15 35647011 35647030 ACTTGCAGCCTCTAATACCT 59 35647167 35647188 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 AC126292.2 ENSRNOG00000055526 ENSRNOT00000091664 3 1 1 60 5 135687777 135687796 CCAGATGAGAATCCACAAGC 59 135687815 135687837 CTGCTTAACAATCTCTGAAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051643 ENSRNOT00000078952 1 1 1 60 5 29570747 29570768 CAACACTTGTTTCAGTAGTTGG 58 29570708 29570728 GTCAGAACACCAAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058844 ENSRNOT00000083584 3 1 1 61 19 44103802 44103825 GGAATGATGCAGAAACTAGTATGG 60 44103843 44103863 AAGGCTTCATGGATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044850 ENSRNOT00000070117 3 1 1 60 5 28555448 28555468 TGCTAAGTAGGATGAGACCTG 59 28555408 28555429 AACTATAGCTTCACCTATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032413.1 ENSRNOG00000048770 ENSRNOT00000074068 1 1 1 60 18 64511582 64511601 CCCAGAGTCCTAACAATGTC 58 64511621 64511642 CTTCATGTATGAGGTCTCAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000061509 ENSRNOT00000081675 3 1 1 60 19 12755596 12755616 AGATGTGGCTTGTTTACATCC 59 12755556 12755576 TGCTGAAGGAATCACTAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055682 ENSRNOT00000088809 3 1 1 60 15 12549297 12549318 GATACAGAGAAGATCAGCATGG 59 12549339 12549357 GGAATGCTTCACGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 1 1 1 60 2 2510225 2510248 CTACTGGAACTTATCAGTTGCC 59 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065217.1 ENSRNOG00000036500 ENSRNOT00000054608 1 1 1 60 6 115823214 115823234 GTATCTGTGGGCGAGTATCTC 60 115823174 115823192 CAGAGGCCTCTGAGTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058044 ENSRNOT00000087590 3 1 1 62 3 64075784 64075803 CAGAGAAGATTAGCATGGCC 59 64075741 64075759 AAATATGGAAGCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058325 ENSRNOT00000077946 2 1 1 60 18 78635400 78635420 ATTCTGAAATTGGACCGACAC 59 78635441 78635460 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061852 ENSRNOT00000087946 1 1 1 60 3 109913371 109913392 ATACAGAGAAGATTAGCATGGC 58 109913412 109913431 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060058 ENSRNOT00000077716 3 1 1 60 3 74347741 74347764 GGAGTGATACAGAGAAGATTAGCA 60 74347783 74347801 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055067 ENSRNOT00000072497 2 1 1 60 19 56338807 56338825 CGATCTCGTCTGATCTCGG 60 56338765 56338785 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041864 ENSRNOT00000063617 1 1 1 60 18 11640216 11640234 ACCCTGAATGCACCTAGTC 59 11640257 11640276 TATAACTGGGACCCACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061120 ENSRNOT00000083846 3 1 1 86 15 25633825 25633846 ACAACATAGATGCTGACATAGG 58 25633760 25633780 GGAGTTCTTGCCAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051765 ENSRNOT00000090169 1 1 1 60 15 39046989 39047008 CTGTGTCACATGTGTTTGAG 57 39046948 39046969 ATACTGAGTTTAGACCTAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053851 ENSRNOT00000084804 1 1 1 60 3 4022502 4022522 ACATACACTGAAGTTGGAACG 59 4022462 4022480 TGTCATCTTTGCCCAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053806 ENSRNOT00000086449 2 1 1 61 X 1517978 1517996 GAGTTGGGAGGTGAGTTCC 60 1517935 1517954 CCTCTTCTGTCCAGTTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056726 ENSRNOT00000089846 2 1 1 60 7 121371492 121371510 CAGTTTCCCTTCCTAGCCA 59 121371450 121371468 AAATGGTGACAGCTTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057105 ENSRNOT00000090607 1 1 1 60 3 176928441 176928462 GCTAGAGTGCTTAGTTTAGCAG 59 176928402 176928425 TAGTACAGAGGCCATACTAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058532 ENSRNOT00000089267 1 1 1 60 10 66946187 66946206 CACCATACAGAGACTCACAC 58 66946228 66946247 GACCGTTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052218 ENSRNOT00000079398 1 1 1 60 7 121675548 121675567 TGTCACATCAGTAGGTAGCA 58 121675507 121675525 CAGATCAGAACACTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054947 ENSRNOT00000079612 3 1 1 75 3 150991173 150991191 CTTATCCATTGCACTCCGG 58 150991116 150991134 CCACAAATTATGCAGTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 2 1 1 65 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649764 43649782 TCTGCAGCCAAACTTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054705.1 ENSRNOG00000059645 ENSRNOT00000085779 3 1 1 80 3 167219719 167219738 TGCATGTGAACTTCACTCAG 59 167219539 167219676 TCTCCAGCATTACACCCTG 59 Novel Rattus norvegicus 81 AC112350.1 ENSRNOG00000047508 ENSRNOT00000073542 1 1 1 80 3 114182621 114182639 AAGCTGCCTACACCAAGAG 60 114182557 114182583 CTGAAGACTTCTTGTACTTATCTGC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060304 ENSRNOT00000081369 1 1 1 60 3 45629313 45629332 CTGAAATCGGAACGACACAG 59 45629355 45629373 CCAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.2 ENSRNOG00000055475 ENSRNOT00000083025 3 1 1 81 6 139531565 139531584 CCCTATACCTGCAAATGGAC 58 139531625 139531689 TGGTCACTAGTATCTGTGTCTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041679 ENSRNOT00000063432 1 1 1 60 3 82292230 82292248 AGAAGCCTGATCCTGTCTG 59 82292188 82292207 AGCTTCTACTAACCAGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.3 ENSRNOG00000057421 ENSRNOT00000081684 1 1 1 103 6 139551788 139551890 TTCCAACCTGTGTCCTGTC 60 139551957 139551975 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07025051.3 ENSRNOG00000054322 ENSRNOT00000092000 3 1 1 74 16 26583539 26583561 TATGCATCCATAGTGGTGGG 59 26583595 26583616 TGTGCAATTATAGTCACAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 snoR38 ENSRNOG00000051978 ENSRNOT00000084995 1 1 1 60 10 105648385 105648408 GATGATCTAAGTTATCCCTGTCTG 58 105648427 105648445 CCTCAGTAAACCGTGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058874 ENSRNOT00000091019 3 1 1 60 7 139421220 139421240 GTACTCTCCTGCTAGAACCTC 59 139421260 139421280 TCTTGTGTTACATGCGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.2 ENSRNOG00000061459 ENSRNOT00000087987 3 1 1 60 15 35844377 35844396 CTACTGTTGTTCCCATGCTG 59 35844417 35844437 ACACTGACATCCTTATTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035437 ENSRNOT00000053560 2 1 1 60 6 72181488 72181507 ATCTTGGAAGCTAAGCAGGG 60 72181447 72181465 GAATTCCCAGGTGGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034597 ENSRNOT00000052720 2 1 1 60 18 27673148 27673166 CGATCTCGTCTGATCTCGG 60 27673106 27673126 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094643.1 ENSRNOG00000049731 ENSRNOT00000072200 1 1 1 60 7 11316056 11316075 GAAGGAGTGAGCATTGAAGC 59 11316015 11316033 TGTGGAAGGCAGTACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055203 ENSRNOT00000087198 3 1 1 60 15 36193680 36193701 CAGTCAAGGGTATATCAGTAGC 58 36193722 36193740 CCTTGAGAGCTTGTTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017527.1 ENSRNOG00000047841 ENSRNOT00000075763 2 1 1 60 15 25280247 25280267 TTAAGATGCAGATTCCAGTCC 58 25280207 25280226 GGAGCTTGTTAGAAATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055800 ENSRNOT00000082608 3 1 1 63 10 37418980 37418998 AAGGCGGAACGATACAGAG 60 37419025 37419043 TCACAAATGCGCATGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0430.2 ENSRNOG00000055166 ENSRNOT00000092014 3 1 1 60 1 41594336 41594356 GTTCCAAACCCATCTTTAGTG 57 41594375 41594396 CTGTATGTTTATTTCCAGGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057123 ENSRNOT00000077212 2 1 1 66 15 14916979 14916997 GTGTCAGTAGGTGGCAGAG 60 14917021 14917045 CAGATGTTCATAGGTAAGAACACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000054970 ENSRNOT00000091849 1 1 1 60 6 23449458 23449476 TGTGATGATATCCACACGG 57 23449416 23449437 CAAGAGAAAGGTGTCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015687.1 ENSRNOG00000060369 ENSRNOT00000082217 1 1 1 108 14 70478895 70478915 CTACAGATTCAATGCAATCCC 57 70478805 70478823 AGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000061185 ENSRNOT00000089055 2 1 1 76 17 43776280 43776298 TATCAGAAGTCCACCGAGC 59 43776222 43776241 TTGAAGTCCTGAGCGATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 3 2 2 95 8 64825815 64825833 TTCATTCCTGGAGAAGCCC 59 64822300 64825756 CTCTTGGAACACATGCTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061228 ENSRNOT00000090649 2 1 1 60 20 10898492 10898511 GATGTCTTTCCTGGACAGAG 58 10898533 10898552 GAGAAGGCTAGCCATTTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057206 ENSRNOT00000077209 3 1 1 60 5 93420357 93420379 GGGATGATACAGAGATTAACACG 59 93420398 93420417 AGGCTTCTCAAATTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061398 ENSRNOT00000088731 2 1 1 60 15 24789363 24789383 ATACCATGATCATGAAGGTGG 58 24789405 24789423 CACATCCAGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056381 ENSRNOT00000088505 2 1 1 65 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146657 65146675 ACAGGTCAGAACACTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056306 ENSRNOT00000081580 2 1 1 60 15 74724232 74724251 TGCATCAGTATCTGGGAGAG 59 74724191 74724210 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052656 ENSRNOT00000086581 3 1 1 60 11 24095625 24095649 GTCAAGGGAATAAGAGTACATACAC 59 24095589 24095610 ACAAATGAGAGCCTGTCTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056626 ENSRNOT00000077937 3 1 1 61 20 45224675 45224693 GTGTCAGTAGGTGGCAGAG 60 45224715 45224736 ATTCCTAGGTCAGAATGCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051668 ENSRNOT00000082935 1 1 1 60 20 11037112 11037132 CTAGAACCTCCAAACAAGCTC 59 11037153 11037172 AGATGCCTCCATGAGATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034729.2 ENSRNOG00000048042 ENSRNOT00000073682 3 1 1 80 11 85306365 85306388 AGATTTCACCTCACATGCGA 60 85306304 85306324 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U5 ENSRNOG00000053002 ENSRNOT00000079533 2 1 1 60 7 49541771 49541793 TACTCAAGATTTCCATGGAGAGG 60 49541733 49541751 GTCAAGACAAGGCCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061628 ENSRNOT00000090185 3 1 1 60 19 33861496 33861514 CTGTGTCACATTGCGTCTG 60 33861454 33861474 GAACACTTGAGTACACAAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053071 ENSRNOT00000078240 3 1 1 60 5 120163942 120163963 GCTTCTTAGGTACTATGTGCAG 59 120163983 120164002 TCTCCAACATCCTATAGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058702 ENSRNOT00000082913 3 1 1 60 11 79317081 79317101 GTACATCAGTAGATGGCAGAG 58 79317041 79317059 ATAGGTCAGAGTCCTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051781 ENSRNOT00000084234 2 1 1 60 19 39207206 39207227 GAATCAGGAAAGATTAGCATGC 58 39207167 39207187 TCCACTGCTTCATGAATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051897 ENSRNOT00000086373 3 1 1 60 9 14334118 14334136 ATGTGTCAGTAGGTGGCAG 59 14334076 14334095 CATAGGTCAGAACACTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 3 1 1 61 9 110547371 110547389 TGAGCACACTTGATCTCCT 58 110547328 110547346 GAAGCAGTAAGCGGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058459 ENSRNOT00000091416 2 1 1 60 18 23172482 23172501 TTGCAGATATGGCTGTTGTG 59 23172520 23172542 TGAGCATAGATCTAGCTTCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065010.1 ENSRNOG00000042752 ENSRNOT00000064247 1 1 1 60 6 103927708 103927726 CGGGTGGAGAGTCATACTG 59 103927666 103927684 TGTGAAAGATTGGGACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 3 1 1 60 4 157008635 157017338 TCAAACAAAGAAGCGGAGG 58 157008593 157008612 CAGTCAGTGCTCTTAACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA5 ENSRNOG00000056003 ENSRNOT00000087539 3 1 1 91 19 10832363 10832381 CCTCTCATGATGGGAGCTG 60 10832435 10832454 TTATCCCTAGTTCCCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061297 ENSRNOT00000078855 1 1 1 60 19 22477089 22477108 CATCAATATGGTGACCTCCC 58 22477131 22477149 GGTTCACTCCTCCTTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059760 ENSRNOT00000083192 1 1 1 60 6 57819899 57819918 CTCCAAACAAGCTCTCACAG 59 57819938 57819959 TTTATATGTTGCCCATGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043039.1 ENSRNOG00000055398 ENSRNOT00000077099 3 1 1 60 19 18812752 18812774 GTAATGCTTGGTTGCTCTATGAG 60 18812792 18812812 TGCTGCTCCTTTCTAAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051557 ENSRNOT00000091947 3 1 1 82 19 61811008 61811026 TGAGGTTTATCCGAGGTGC 60 61810944 61810964 GGGCTAAGTACTCCTGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053542.2 ENSRNOG00000046653 ENSRNOT00000071731 1 1 1 60 3 112786694 112786713 CTCTTCTTCCTCCTCTTCCT 58 112786653 112786671 AAAGGAGGTGGAGGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053132 ENSRNOT00000080136 1 1 1 60 5 142878754 142878772 GGAAGATCAGTGTGGTCCC 60 142878795 142878814 AAATATGCAGCATCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056291 ENSRNOT00000082768 3 1 1 60 18 34128216 34128238 GACCTTCCCTAAATAGAAGAGGA 59 34128255 34128276 GAGGCTACAGCTATTCATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049890.1 ENSRNOG00000048618 ENSRNOT00000074785 1 1 1 93 5 142870498 142870516 CCTTGTTGGAGGAAGTGTG 58 142870573 142870591 CCTCAGACAGCAGGAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000055168 ENSRNOT00000077371 1 1 1 114 3 23279579 23279597 TATAGGCATGGCACTAGGA 57 23279483 23279502 TGACCCTGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055216 ENSRNOT00000079125 3 1 1 63 3 163463272 163463291 CAGAGAAGATTAGCATGGCC 59 163463316 163463335 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.6 ENSRNOG00000052050 ENSRNOT00000087983 3 1 1 103 6 138640051 138640153 CATTTCCAAGCTGTGTCCT 58 138639966 138639984 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000058032 ENSRNOT00000090826 1 1 1 60 5 114474022 114474043 GGAGATAACATGTTCACAAAGG 58 114474061 114474082 TCCAGAGTGTGATAAACAAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000052950 ENSRNOT00000084400 1 1 1 62 5 104951924 104951943 CAATTGTCACTAGACCTCCC 58 104951881 104951899 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044703 ENSRNOT00000069970 2 1 1 60 18 27871024 27871042 CGATCTCGTCTGATCTCGG 60 27871066 27871084 TCCACAAGAGCAGAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068668.1 ENSRNOG00000061298 ENSRNOT00000090539 2 1 1 60 9 114281360 114281379 TTTATTCTGGACCTGTGGCT 59 114281319 114281342 GACAATCTATCCTCCAATATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051399.1 ENSRNOG00000055886 ENSRNOT00000082845 2 1 1 82 3 9185828 9185846 CCTCTGCTTCAGACTTGCT 60 9185890 9185912 AGTTCTCTGTGTCCTTGTGAG 60 Novel Rattus norvegicus 81 AC120246.3 ENSRNOG00000055053 ENSRNOT00000079465 2 1 1 86 19 25839662 25839680 AAGTGGACCAGAGTTCCAG 59 25839731 25839751 GGCTTTCAGTATGTCCTGGT 60 Novel Rattus norvegicus 81 AABR07043271.1 ENSRNOG00000057212 ENSRNOT00000090756 1 1 1 80 19 26944630 26945889 CATGAAGAACAGGCCACAC 59 26944568 26944586 AGAATTGACATGACCGCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060476 ENSRNOT00000081478 1 1 1 60 11 50228808 50228829 GATTGTGTCATATGTGCATCAG 58 50228849 50228868 CAGAACATTGAACCTAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.3 ENSRNOG00000049551 ENSRNOT00000072648 2 1 1 82 19 30820135 30821796 TGACAATCCATGCATGCAG 59 30820071 30820089 CTCGATGGTCACTGGACTC 60 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000056879 ENSRNOT00000079344 3 1 1 73 20 11934188 11934206 ATGCCAGAGTAACGGAGAG 59 11934133 11934152 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.1 ENSRNOG00000056962 ENSRNOT00000088557 1 1 1 93 4 117789844 117790303 GTGTAGTAGCGGGACTCAG 59 117789769 117789789 CGCAGATGTGATAAGAAACCA 59 Novel InUTR Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053668 ENSRNOT00000089633 3 1 1 60 7 1625203 1625223 GATGAAGAACATGGCTAGCTG 59 1625244 1625263 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 3 1 1 60 7 32193193 32193212 CGGCAAAGTCAATACCTGTC 59 32193235 32193253 CGTCTCAGCATACTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 1 1 1 61 19 12402888 12402906 AAGAAGTTAGACCGCAGGG 59 12402843 12402863 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010181.1 ENSRNOG00000055473 ENSRNOT00000091500 2 1 1 80 2 128194992 128195014 AAACCAGAACTTTAGTCTGGG 58 128194932 128194953 TATCAGATACAATGGGTAAGCC 58 Novel Rattus norvegicus 81 Rn60_1_0436.1 ENSRNOG00000059866 ENSRNOT00000087728 2 1 1 60 1 43563935 43563956 AAATCTCTGTGAAGTGGATGTG 59 43563896 43563916 TGAGAAGGTTAGGTTTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046866.1 ENSRNOG00000060709 ENSRNOT00000085321 1 1 1 61 5 10125141 10125159 AGACCTGCTGATGCTACAG 59 10125183 10125202 CAGAATAGAAAGGCTCACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 2 1 1 73 6 140642047 140642179 AAAGGTGTCCAGTGTGAGG 60 140641992 140642011 AGTTTCAGAGACCTTCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059692 ENSRNOT00000081956 1 1 1 60 9 42296681 42296701 GAGCTATACAGAGAAGACCAG 57 42296723 42296741 GCTTCAGGTATTTGCATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 1 1 1 60 5 91133001 91133019 GATGAAGAACGCAGCTAGC 59 91133042 91133061 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062289.1 ENSRNOG00000055734 ENSRNOT00000080471 1 1 1 197 4 166882502 166882524 GTGCTTCTGTCTATTGTTCTAGG 59 166882326 166882344 CGATGTCAGAGACACTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA27 ENSRNOG00000057459 ENSRNOT00000082764 1 1 1 60 6 80224782 80224801 AAGAGGCTAACACAGAAGGG 60 80224824 80224842 GAGTGGAGCCTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059531 ENSRNOT00000077576 1 1 1 60 11 52947366 52947387 GATACAGAGAAGACTAGCATGG 58 52947408 52947426 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054645 ENSRNOT00000080789 1 1 1 60 11 49046054 49046076 CAGAGAAGTTTAGCTATGAACCC 59 49046094 49046114 TGAACGCTGTACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.2 ENSRNOG00000048880 ENSRNOT00000074315 3 1 1 60 9 50005824 50005842 GATGGTACGGAGGATTGGG 60 50005782 50005802 ATTCCAAACTGTGACTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 3 1 1 60 6 91581080 91581103 AGTATCTCTGGTATTGAAGAGGTG 60 91581043 91581063 TAAAGTGGGTCACTGTTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057747 ENSRNOT00000088773 3 1 1 60 7 114975602 114975621 GTTCTAGAGCTGGACATTGC 59 114975641 114975662 ATCCTTTCCTAGATTCCTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061106 ENSRNOT00000078901 2 1 1 60 9 79578129 79578147 AGTTGGAATAGGAGCTTGC 58 79578171 79578189 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057448 ENSRNOT00000083733 3 1 1 60 7 3870164 3870184 GTGATCTGACTGAGACATCTG 58 3870124 3870145 CAGATAAGCAGCTCAATCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013654.1 ENSRNOG00000061151 ENSRNOT00000072763 2 1 1 77 2 248579797 248579816 TCCCTGAAAGAATTCCAGGA 58 248579855 248579876 CCTGTGTTCTTTCTTGATTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000048338 ENSRNOT00000062639 3 1 1 60 9 30067749 30067767 CCCAATCTCGTCTGATCTC 57 30067789 30067809 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059325 ENSRNOT00000079105 2 1 1 82 7 135931708 135931726 CTTCTAGAGGCCTTGCAGG 60 135931644 135931663 GAGTGTGGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054407 ENSRNOT00000085960 2 1 1 62 7 6637741 6637762 GTGTCACATGTAAATGACAGAG 58 6637781 6637803 GTTCATAGATCAGACACTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027387.1 ENSRNOG00000041434 ENSRNOT00000063187 1 1 1 67 17 27700540 27700558 ATCTCTGTGAGTTCGAGGC 59 27700589 27700607 TTTCTGTGTAGCCTTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057412.1 ENSRNOG00000050895 ENSRNOT00000074506 2 1 1 62 7 70020530 70020549 AGTATTGGCCTTGGAGTCAG 60 70020487 70020505 CATGCATATTGGACGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042669.1 ENSRNOG00000031076 ENSRNOT00000047925 2 1 1 60 19 2611358 2611376 AAGTACCACTTGCTCCTGG 59 2611316 2611336 AAATTCTCCACCAGATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 1 1 1 60 7 109411581 109411602 TGAAGAAACCTCATCGTTACAG 59 109411621 109411641 TGATAGCATCTGATTTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054659 ENSRNOT00000078118 1 1 1 60 4 9892053 9892074 GTTGTTCTTACATCAGTCAGGG 59 9892095 9892113 AAGCTAGGATGAGCAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053870 ENSRNOT00000091353 3 1 1 70 7 107447956 107447978 TGATATGTCCTCTATCCAAGGAC 59 107447908 107447926 GCAGACTCCTATTCCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054913 ENSRNOT00000084519 3 1 1 61 4 93769410 93769431 GGTATGTCAGTAGGAGGTAGAG 59 93769370 93769388 AGGACATCAGTGAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033540.1 ENSRNOG00000054029 ENSRNOT00000082485 3 1 1 80 11 26721285 26721305 ACAGACAGATAGACCAATGGA 58 26721221 26721245 CTCCTTTGTCAAACAAGTGAC 58 Novel Rattus norvegicus 81 SNORA11 ENSRNOG00000058707 ENSRNOT00000085194 1 1 1 61 7 97969706 97969724 GAGCAGAGGGCCTAAAGAG 60 97969663 97969682 TGGTCCCAGATTCTTCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061461 ENSRNOT00000081563 1 1 1 60 10 7300146 7300164 GTCCCTAGAGGTGTTGCAG 60 7300104 7300122 TTCTCTGCCACCTATCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059708 ENSRNOT00000084832 1 1 1 60 4 67043334 67043352 GTGCTCAATTTGGCAACAC 59 67043292 67043311 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052439 ENSRNOT00000083758 3 1 1 60 8 128807805 128807826 TTCCTACAACTTCTCAGAGTCC 59 128807847 128807865 TGTTTCCTGCATGGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021759.1 ENSRNOG00000023269 ENSRNOT00000039633 2 1 1 138 13 90059483 90059501 TGCTAAGAAGTTCGCAGAG 58 90059362 90059380 CATCTCTTCCTCAGGAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0879.5 ENSRNOG00000051343 ENSRNOT00000076523 3 1 1 88 10 88079777 88084534 AACAAGGTGATGTAGGTCCC 60 88084584 88084603 AGAAAGACTGCTCAGTCCAC 60 Novel Rattus norvegicus 81 AABR07041724.1 ENSRNOG00000052130 ENSRNOT00000085536 3 1 1 62 X 137733209 137733228 CACAGAATTCCTCCCAAGAG 58 137733166 137733185 AAAGAAAGCAAGCCTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067300.1 ENSRNOG00000060645 ENSRNOT00000083847 1 1 1 60 9 38799993 38800012 GCTACCATGTGATTGAGCTG 59 38800033 38800053 TTGATGTCACTGTACTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041247.2 ENSRNOG00000032390 ENSRNOT00000040695 1 1 1 60 X 124107573 124107593 AGAGCACTACAAACATCACTG 58 124107533 124107551 ACACCTGTAACCTGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0890.5 ENSRNOG00000051024 ENSRNOT00000075953 2 1 1 149 10 89174623 89174641 GAACCTTTCTGCTGTGCTG 60 89174753 89174994 CGGCTGTAACGTAAAGAAGG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000055366 ENSRNOT00000080513 3 1 1 61 1 177432150 177432168 GCTTCTGGTGTCACATGTG 59 177432107 177432125 ACCGAGCATGGACATAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034612 ENSRNOT00000052735 3 1 1 60 8 39196762 39196780 CCCGATCTTGTCTGATCTC 57 39196720 39196739 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.3 ENSRNOG00000060421 ENSRNOT00000085101 2 1 1 60 X 152889429 152889447 CCAGAACCTTGGGAAATGG 58 152889469 152889489 GCTGGTTGATGGTTATAAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071935.2 ENSRNOG00000061441 ENSRNOT00000087364 1 1 1 60 X 157200724 157200743 CCACCATCAACAAGAATGCT 59 157200683 157200701 TTCTTTCGGATCATCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051373 ENSRNOT00000088296 2 1 1 60 13 30630881 30630900 CTCTACAGGCAAGGTAAGTG 58 30630840 30630861 TCTCTATGCCACCTACTAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053734 ENSRNOT00000086034 1 1 1 60 8 75469071 75469089 ATGCCTGCCTTCTAGAACC 60 75469110 75469131 GCTGTACAGTAAGTGTTCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002384.2 ENSRNOG00000046037 ENSRNOT00000073243 2 1 1 82 1 72360923 72360943 AGACTGACAGAAACCTTCAG 57 72360860 72360880 ATTTGGGAGTTGTAGTATGGG 58 Novel Rattus norvegicus 81 AABR07025900.1 ENSRNOG00000049606 ENSRNOT00000074244 2 1 1 80 16 54608583 54608604 CCAAAGCAAACACTGAATATCC 58 54608648 54608667 AGTCTTCCAGCATCATGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036638.1 ENSRNOG00000056163 ENSRNOT00000079153 2 1 1 60 12 51273325 51273345 CTCTGTCCTTGACCTAATCTC 57 51273283 51273303 CCTAGCTGATAAGAAACAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA33 ENSRNOG00000054517 ENSRNOT00000084929 1 1 1 60 1 22759974 22759993 CTAGTCTGCTTAGCTCTGTG 58 22760016 22760034 ATGGCGTTACTATTGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035686 ENSRNOT00000053809 1 1 1 60 1 71911887 71911906 GAAGTTAAGCAGGGTCAAGG 59 71911928 71911947 CACCCAGTATTTCCAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 3 1 1 60 9 4107535 4107555 CTTTATTCAGGGATTCCTGGC 59 4107576 4107657 TTTGTATGACAGGGTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029933.1 ENSRNOG00000019814 ENSRNOT00000026813 2 1 1 80 10 60536729 60536751 GGAGGGCTCATCTATATTCCA 59 60536790 60536811 AGATGGAACCTTAAGGATGGAG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000060814 ENSRNOT00000083104 3 1 1 60 8 91751324 91751342 AGTTGGAATAGGAGCTTGC 58 91751365 91751384 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053088 ENSRNOT00000089896 2 1 1 82 8 48799220 48799238 GAGACAGAACTGCCTCCTG 60 48799156 48799174 TGTGTCATTCTTGTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070952.1 ENSRNOG00000051779 ENSRNOT00000079911 2 1 1 60 8 93161215 93161235 TCTCACAGAACTTGACTTTGG 58 93161175 93161194 CAGAAGAATCCAAACCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071243.1 ENSRNOG00000046364 ENSRNOT00000071769 3 1 1 98 8 106582010 106582028 GAACAACATGAGCCTCTGG 59 106581929 106581948 GTATCACCCAACCAGACAC 58 Novel Rattus norvegicus 81 AABR07024682.1 ENSRNOG00000055022 ENSRNOT00000080192 3 1 1 90 16 12123948 12124096 CAGACAAGAGTGAGAATGATTCTG 60 12123881 12123899 CCTAGCTTAACCACAGCCT 59 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000077198 3 1 4 85 20 4427797 4427815 AGTAAGGGAAGCGTCTCAG 59 4427012 4427030 GAGATCCGAGCTGAGAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 3 1 1 61 2 35185905 35185926 CTTCTGTTCCTGAGCATCG 58 35185951 35185969 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC128582.1 ENSRNOG00000051988 ENSRNOT00000091386 1 1 1 60 8 79862932 79862950 AACCAGTTCCACAAATGGC 59 79862890 79862911 ATTTGTATCTTTGTGACCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044278.1 ENSRNOG00000049494 ENSRNOT00000071753 3 1 1 80 20 956122 956143 TGGTGACATATCTATTGGGCTC 60 956061 956081 ACATTGGAGACTGGAGTGG 59 Novel Rattus norvegicus 81 AABR07026359.1 ENSRNOG00000060898 ENSRNOT00000088219 3 1 1 80 16 73761623 73762935 ACAATTATTGCCGGAACCC 59 73762976 73762997 AATATTCCCATGTCAGCTTTCG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053407 ENSRNOT00000079708 1 1 1 60 3 114545477 114545497 TAGCCAATGAGGTTTATCCGA 59 114545437 114545455 AACACCAATGGCTTATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055360 ENSRNOT00000087882 3 1 1 120 3 15415343 15415361 CCACAGGTCAGGTACAGTG 60 15415241 15415260 GCTCCATTTACCTTCTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061411 ENSRNOT00000082625 1 1 1 60 3 109824084 109824104 GAGATGCCATGATGACAAAGG 60 109824044 109824064 ATCCTGAGAGCAATTGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031272.1 ENSRNOG00000051767 ENSRNOT00000078083 2 1 1 92 18 6828616 6829558 ATGGATGAACATTCGACTTCTG 59 6828545 6828564 ATCCAAACCAAGGTCCTCTG 60 Novel Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 3 1 1 83 18 8497668 8503629 TTCCTGGAACAGAGCACAG 60 8497603 8497622 AACTTTCCATTTCCAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000079012 3 1 2 71 14 36596310 36596328 CAATGACTGTGCCTTGGTC 59 36590323 36590342 GTCCAATATTCTGCTCGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 2 1 1 66 6 2660339 2660932 CTTCACTCCTGCAATGAGC 59 2660291 2660311 TCCATCACTGCAAGATTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031388.1 ENSRNOG00000054849 ENSRNOT00000079904 1 1 1 80 18 12104431 12116525 CTTCCGAAGTTCACATGAGAG 59 12104371 12104390 TGACAATGTTGCTTACTGCT 58 Novel Rattus norvegicus 81 AABR07062751.1 ENSRNOG00000055921 ENSRNOT00000083431 3 1 1 76 6 6068239 6068257 CGTCTGAGAAACAGATGCC 59 6073978 6073997 CATAGAGCATTGCAGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031399.1 ENSRNOG00000060341 ENSRNOT00000083236 2 1 1 128 18 12283736 12283754 CAAGGATGTGAAGTGGAGC 59 12227023 12227041 AGCAGGTAGTCATTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062758.1 ENSRNOG00000056625 ENSRNOT00000083746 3 1 1 81 6 6498724 6498743 ATCCTGTCACAGATGTCTGC 60 6498785 6499257 AGGAGATGCTTCATGACTGAG 60 Novel Rattus norvegicus 81 AABR07000200.1 ENSRNOG00000053182 ENSRNOT00000087887 1 1 1 80 1 4356401 4356419 GCTGGACTACTGTGGACTC 60 4328367 4356361 CCTTGTTCTTTGTCTCTAGACTG 59 Novel Rattus norvegicus 81 AABR07015399.1 ENSRNOG00000051674 ENSRNOT00000090450 1 1 1 80 14 53798633 53798655 CAGTACATCTTTACTACCACAGC 59 53798695 53806682 GCCATCACTCTACCTTCCT 59 Novel Rattus norvegicus 81 AABR07047103.1 ENSRNOG00000052266 ENSRNOT00000091908 3 1 1 81 5 19727956 19730870 CTCAACTATACAGAGTAGGCC 57 19727895 19727913 TTCAGAGGATCCACAGGAG 58 Novel Rattus norvegicus 81 AABR07047531.1 ENSRNOG00000060892 ENSRNOT00000079218 2 1 1 88 5 36692613 36692898 GAAGCCTGAAGATTTGCAC 57 36692543 36692561 TGATGGCCAGTTCATTCTC 58 Novel Rattus norvegicus 81 AC110488.1 ENSRNOG00000011990 ENSRNOT00000015955 1 1 1 62 5 57738134 57738153 GGGAAAGAAGAAAGGAAGGG 58 57730229 57730248 CTATGACATTGATGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015846.1 ENSRNOG00000060138 ENSRNOT00000087729 3 1 1 82 14 80623858 80623876 AAGAGGAGAAGCAGAAGCA 59 80622959 80623815 ATCAGACATTTCTTCCATCTCC 58 Novel Rattus norvegicus 81 AABR07030351.1 ENSRNOG00000054174 ENSRNOT00000085242 1 1 1 82 10 82338507 82341074 AGAAACTCTACCTTGTCCCA 58 82341118 82341137 GGAATTGAACTGGAGTCCTC 58 Novel Rattus norvegicus 81 AABR07030363.1 ENSRNOG00000051683 ENSRNOT00000079789 2 1 1 80 10 82582209 82582405 ACCAACCATTCGTTGTTCTG 59 82582148 82582166 TGGACAGTAAGCCTTCAGG 59 Novel Rattus norvegicus 81 AABR07048139.1 ENSRNOG00000057107 ENSRNOT00000078497 1 1 1 88 5 64438021 64438039 GAAGCCAGGAAGGAGATGG 60 64438089 64440482 TTCTCGGGAACTATGATGTCC 59 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000084174 3 1 2 80 4 117655197 117663063 CGTTGAAGACCTGAATCCAG 59 117655136 117655156 AAAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07016545.1 ENSRNOG00000060432 ENSRNOT00000087724 1 1 1 112 14 102809494 102878625 CTGAAATGGCAGGATGCAG 59 102809400 102809418 GACAGACATGCCAAGTCCT 60 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 1 1 1 60 14 104764531 104768599 GGTGTTCTGCAAGCATCTC 59 104768623 104768641 GTAAGACGGCGGTAATGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 2 1 1 61 4 132914657 132918153 CTCACTCAGGCTTCTGGAC 60 132918178 132918196 CCCTGTGATCTCATGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000079852 1 1 2 83 10 93205816 93206379 TGACGACTCTGGATGAAGC 60 93206423 93206444 CTTTCTCAGTGATCTCAATCCC 59 Novel Rattus norvegicus 81 AABR07048898.1 ENSRNOG00000056560 ENSRNOT00000091679 2 1 1 80 5 96243891 96244164 CCTACATGACTACTAGATGCAG 58 96242817 96242835 AACAACTCGTTTCTGTCCC 58 Novel Rattus norvegicus 81 AABR07061573.1 ENSRNOG00000055841 ENSRNOT00000085472 2 1 1 82 4 134096315 134096333 TCACAGGATAGCTGTGGTC 59 134096379 134101643 CGACAGACAGGAATCTTCG 58 Novel Rattus norvegicus 81 AABR07016731.1 ENSRNOG00000054144 ENSRNOT00000086364 3 1 1 91 14 113149806 113149979 CTTTAACCAGTGGCTTCGG 59 113150034 113150052 TGGTCTTACCTCTGCTGTC 59 Novel Rattus norvegicus 81 AABR07030657.1 ENSRNOG00000057482 ENSRNOT00000078974 2 1 1 100 10 97938023 97939315 TGACTATAGCTTGGCCTCG 59 97937941 97937959 GATGGATCTCCCGTCTCTG 59 Novel Rattus norvegicus 81 AABR07030657.1 ENSRNOG00000057482 ENSRNOT00000078974 3 1 1 107 10 97938022 97939314 GACTATAGCTTGGCCTCGG 60 97937933 97937951 GTTCCAGGGATGGATCTCC 59 Novel Rattus norvegicus 81 AABR07072439.1 ENSRNOG00000057904 ENSRNOT00000083952 3 1 1 85 15 4506499 4509496 AGGAGAAGGTGACTCATCC 58 4509545 4509563 TCATTACTGTCCCTCTCCG 58 Novel Rattus norvegicus 81 AABR07030714.1 ENSRNOG00000054938 ENSRNOT00000077545 1 1 1 81 10 101113035 101113053 TATCAGCCCAACAGGAGAG 59 101113094 101123579 CGAGGAGAAATAAGATACAGAGC 59 Novel Rattus norvegicus 81 AABR07062046.1 ENSRNOG00000057403 ENSRNOT00000084248 3 1 1 63 4 158762663 158791070 CAGAATCATTGCCAGGCTC 59 158791096 158791115 CAGGCTTTCTGATCATTCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AC103292.1 ENSRNOG00000055109 ENSRNOT00000087363 3 1 1 84 4 159734355 159737088 CCAAGTGAAGAGCTTCCAC 59 159734289 159734307 CTTGGTAAAGGACCTGCTC 58 Novel Rattus norvegicus 81 AC118434.3 ENSRNOG00000055871 ENSRNOT00000081013 1 1 1 84 10 102765112 102766382 ACTGTGAGACCAAAGGGTG 60 102766428 102766448 TCTCTGGAAATCTAAGCAGCA 59 Novel Rattus norvegicus 81 AABR07030791.1 ENSRNOG00000052940 ENSRNOT00000090488 3 1 1 60 10 104820044 104820062 GACACAATTCCTGCTTCCA 58 104818622 104818641 CCAGGATGCATAAGTAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 2 1 1 61 4 161342599 161387684 TTTGACCAAGCACAAGCTC 59 161387709 161387727 CAATACTGCTCTGAGCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062112.2 ENSRNOG00000058933 ENSRNOT00000084779 3 1 1 73 4 161527283 161527301 GTTCACAGAGGCTCTTTCC 58 161519855 161519873 CTTCGAAGTTTCAGCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017208.2 ENSRNOG00000061006 ENSRNOT00000090768 2 1 1 80 15 17937279 17944376 CTATGACAGGATTGTGCTTCG 59 17944417 17944436 TTCTGAAAGTCAAAGACGCC 59 Novel Rattus norvegicus 81 AABR07049510.1 ENSRNOG00000052641 ENSRNOT00000083989 1 1 1 80 5 125069359 125070162 CCTTCCAGAACTGAGTCCT 58 125070206 125070224 TTTGGAGGTTCTGATGCAC 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086932 1 1 3 83 1 38882295 38882313 TTCAGGTCTGACAACACTG 57 38864918 38882248 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000088504 1 1 3 136 1 38842215 38859595 GAAAGCATGCATGAGTATCC 57 38842098 38842117 TGTACATCAGCATTTAGGCA 57 Novel Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000091841 2 1 2 80 15 20340939 20341993 ACTGTATACTGTGGGTTTGGT 59 20342035 20342053 CGATGGTAGGTCTGAGCAG 60 Novel Rattus norvegicus 81 AABR07017626.1 ENSRNOG00000058996 ENSRNOT00000084265 2 1 1 87 15 29388297 29388315 TCATGCAGAGGGACAAGTG 60 29388007 29388246 TGGGCCACAATACATCCAG 60 Novel Rattus norvegicus 81 AABR07017716.1 ENSRNOG00000053509 ENSRNOT00000086032 3 1 1 91 15 30343238 30343479 TTTGTCTGGATGTATTGTGGC 59 30343167 30343185 ATGAACAGTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 3 1 1 60 4 181524203 181524896 AGCCAGAACCTCTACATCC 59 181524161 181524179 CACAGTTCTTGTAGTGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017814.1 ENSRNOG00000058542 ENSRNOT00000089808 1 1 1 80 15 31308673 31308817 ATACATTATTTCCTGGGAGGTG 58 31308857 31308876 GGAGTCTCCTTCAAAGACAG 58 Novel Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 1 1 1 62 4 182329579 182329599 GAGATAGAGAAGTGGGAAGGA 58 182329623 182330269 TGCCTTCTGTCTTCTGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049815.1 ENSRNOG00000054075 ENSRNOT00000083167 2 1 1 81 5 139265908 139265930 CTGAACCTTCTACATTAGTCGTC 59 139265342 139265868 CACGAACTTCCCTTGTTCTC 59 Novel Rattus norvegicus 81 AABR07001555.1 ENSRNOG00000060475 ENSRNOT00000082248 2 1 1 91 1 51525306 51525324 TTCACCATTTGCGGAACAC 59 51525081 51525251 CATCCATCTTGTCTGCTGC 59 Novel Rattus norvegicus 81 AABR07031952.1 ENSRNOG00000060469 ENSRNOT00000087148 2 1 1 82 18 40397747 40397769 AAAGGACGAGATGATCTACTACC 59 40300864 40397705 ATCTTGTCAGTGCCCAGTC 60 Novel Rattus norvegicus 81 AABR07050134.1 ENSRNOG00000057126 ENSRNOT00000087947 1 1 1 62 5 153015118 153015136 AATCGACATCTCCTGTGTC 57 153014606 153014624 CAGACCTCACCAAATTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 2 1 1 76 1 56541446 56541464 AAGATTCTCGGCTCACCTG 60 56539474 56541406 AAACTATGACTTCTGCCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 2 1 1 60 6 36846743 36855873 AACAGCACTGTTGACAGGT 60 36855896 36855915 TCCATTAAATGTCGCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 2 1 1 129 6 38807587 38807605 GTTTGTTCTTGGAGGGCAG 59 38806293 38807495 TTTGTCTTTGTGGTTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC098462.3 ENSRNOG00000058214 ENSRNOT00000088236 2 1 1 80 1 63301741 63315765 CCTAGTATCACAGCGTCTGG 60 63301680 63301700 GCACCAATAGCTGTAATCTGG 59 Novel Rattus norvegicus 81 AC107274.1 ENSRNOG00000058091 ENSRNOT00000088210 3 1 1 88 18 57896933 57896951 TGCTCCATAAGAGTCAGCC 59 57885901 57896881 TCCAAAGCTATGTTGGCGA 60 Novel Rattus norvegicus 81 AABR07050415.1 ENSRNOG00000055071 ENSRNOT00000078178 2 1 1 80 5 164240321 164240339 TTAAGCTGCAGTTGCTGTG 59 164235714 164240279 GCCAAATATCATGGGTTCTGG 60 Novel Rattus norvegicus 81 AABR07018349.1 ENSRNOG00000058454 ENSRNOT00000079047 3 1 1 89 15 53495860 53495878 CATCCAGACTCCTCAAGGG 59 53495289 53495810 CTACTACCCATTAGAGTGGTGG 60 Novel Rattus norvegicus 81 AABR07002262.2 ENSRNOG00000061569 ENSRNOT00000090639 2 1 1 80 1 70290398 70297318 CTTCCTAGGTACCAGTTCCC 59 70297361 70297379 ACTGTCTTCCTCTGTTGCT 59 Novel Rattus norvegicus 81 AABR07018456.1 ENSRNOG00000058117 ENSRNOT00000086799 1 1 1 80 15 58667351 58668935 TCACAGTGAAGGCTCACAG 60 58667289 58667308 GCAGTTGTCAGTTTGAAGGT 59 Novel Rattus norvegicus 81 AABR07063740.1 ENSRNOG00000052618 ENSRNOT00000077838 3 1 1 81 6 44586745 44614720 CCACAGCTTTACAAGTGGC 60 44614764 44614783 GTCAGGATTGCCACAATCAG 59 Novel Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 2 2 2 93 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081099 167081117 AAGTTGTTTGTCTGGACGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018503.2 ENSRNOG00000058815 ENSRNOT00000084849 3 1 1 83 15 62248565 62248585 TCAATCAAAGACCACCTTCCA 60 62232226 62248520 TTCTCTGAGCCAAGAGGTG 59 Novel Rattus norvegicus 81 AABR07051250.2 ENSRNOG00000061542 ENSRNOT00000090507 3 1 1 87 3 3492162 3492180 ATTGAGACAGACCACAGCA 59 3489163 3489181 TTCTTCTGAGCTCCAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102548225 ENSRNOG00000053223 ENSRNOT00000084356 3 1 1 67 18 71885830 71885848 TTCAAGGAACTTTGGCCGA 60 71886821 71886839 CTCAACCAGTGTGAGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019099.1 ENSRNOG00000057030 ENSRNOT00000080719 3 1 1 83 15 89029791 89030248 TCTAAAGCACATTTGGGTTTGG 60 89029729 89029753 GTCTGAGTAGATTCTCAAACTTTGG 60 Novel Rattus norvegicus 81 AABR07019116.2 ENSRNOG00000058401 ENSRNOT00000087558 3 1 1 80 15 89807759 89807778 GGAAGAATCATGGCATCTCC 59 89806957 89807716 TTTGCTTCTTCCACTGCAG 59 Novel Rattus norvegicus 81 AC126134.1 ENSRNOG00000060916 ENSRNOT00000078700 3 1 1 82 3 5584207 5584229 CTCAACTGGATCTATTCAGAGGA 59 5584271 5584606 GGTCACAGCTACCTTCCAG 60 Novel Rattus norvegicus 81 AABR07051370.1 ENSRNOG00000052882 ENSRNOT00000080029 1 1 1 60 3 6809814 6809835 CTCTGATTTATAAAGTCAGCGG 57 6809143 6809161 ACATGCCCTAGGTACATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 2 1 1 110 18 78944654 78944672 ACAAGATACACCCAGGCAC 60 78941246 78944581 AGAGAAAGGTAACCGTTCCC 60 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000080938 3 1 2 84 15 98620280 98620298 TATGCAGAGTTGTGCTGGA 59 98620340 98620471 GGATTCCTTTACCTTACTTTACTCC 59 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000088090,ENSRNOT00000080938 3 2 2 94 15 98619330 98619349 ATAACTGTAGCTTGCGAGCT 60 98620276 98620294 GCACAACTCTGCATAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032758.2 ENSRNOG00000057736 ENSRNOT00000088438 2 1 1 81 18 80209712 80209732 TTCTATATCTGCCCAGAACAG 57 80209775 80212455 TTTACAGCAGGATCCTGGA 58 Novel Rattus norvegicus 81 AABR07032787.1 ENSRNOG00000052546 ENSRNOT00000088794 3 1 1 81 18 82089109 82108783 GTAACTGTTGACCTCTACTGTC 58 82108824 82108843 CTCTAGATGGACTCCATCCA 58 Novel Rattus norvegicus 81 AABR07051515.2 ENSRNOG00000059518 ENSRNOT00000088402 1 1 1 90 3 14699896 14705331 ACTCACTGATTTGATGTGGC 59 14705384 14705402 GTCATTCTTCCACTGCGTC 59 Novel Rattus norvegicus 81 AABR07019435.1 ENSRNOG00000055868 ENSRNOT00000080782 3 1 1 81 15 105341802 105349728 AATGACCAGTTCATTCCACC 58 105341740 105341758 TTGCCATTCCATTCCAGAC 58 Novel Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 2 1 1 95 6 90259918 90259936 ACTCCACTGTCAGTCAAGC 60 90255951 90259861 AGGAGTTCTGCTTAGTACCAC 59 Novel Rattus norvegicus 81 AABR07071904.1 ENSRNOG00000052237 ENSRNOT00000077787 2 1 1 81 1 94836399 94836419 AACCACAAAGGACATTTGTGG 60 94836460 94837410 CCTTCAGGTCTGCTTTAACAC 59 Novel Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 2 1 1 88 1 95240940 95240958 CAACAATGACAACAGCAGC 58 95241010 95241716 TCTTGGGTCCAAGATAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 1 1 1 80 3 21379340 21379359 GGTCCCATCTGGATGAAGAG 60 21375982 21379298 CCTTCAGAGTCATCTTCCCA 59 Novel Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 1 1 1 95 3 30111698 30111716 ATTCATGTGAACCCTCACG 58 30111775 30111917 AAGTCCGAGCCAAATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC127764.1 ENSRNOG00000054104 ENSRNOT00000085099 1 1 1 90 13 47203782 47203802 AGTATTCTCTACTCCAGTGGA 57 47202588 47203730 CATATAGCGGACACCTGTG 58 Novel Rattus norvegicus 81 AC127764.1 ENSRNOG00000054104 ENSRNOT00000085099 2 1 1 91 13 47203782 47203803 TAGTATTCTCTACTCCAGTGGA 57 47202588 47203730 CATATAGCGGACACCTGTG 58 Novel Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 1 1 1 60 6 117418999 117419019 CACTTATTGTCTTGTGTAGCC 57 117418162 117418977 GTCTTCCCACTTTCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052327.1 ENSRNOG00000054061 ENSRNOT00000078922 1 1 1 95 3 47689080 47689098 TAGCTGCTCTTAGCAAGCT 59 47689156 47690627 CTTCTTGATCTCACGCTGAC 59 Novel Rattus norvegicus 81 AABR07021411.1 ENSRNOG00000052592 ENSRNOT00000090948 2 1 1 109 13 70830891 70832262 AGATGATGGTTCTCCAGACG 59 70830801 70830822 CGACATACTTGTTTAAGACGGG 60 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000088159 2 1 2 80 11 44736638 44753146 AGCTCCTGAAGAGAAAGCTG 60 44736577 44736597 ATGACATCCCAAATGTTGAGC 59 Novel Rattus norvegicus 81 AABR07003699.1 ENSRNOG00000053358 ENSRNOT00000090501 2 1 1 93 1 117630900 117630918 CATGAAGACAAGCCCATCC 59 117629627 117629647 CTCCGTATTGTCTAGAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052529.1 ENSRNOG00000061018 ENSRNOT00000079761 1 1 1 84 3 60249830 60252014 AGAAGAACACATACAGGTGAG 58 60249766 60249784 TATGTTTGGCAAGGTGGTC 58 Novel Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 2 1 1 64 3 61124873 61124894 CCAGTTCAAACATGTGTAACGA 60 61124919 61125089 CCTGGAGTTCTTGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021612.1 ENSRNOG00000054298 ENSRNOT00000087910 3 1 1 80 13 81482935 81507639 ATCAGCCTCAGTCCTTAAGG 59 81507679 81507700 ATACATGATGTCTACCAATGGC 58 Novel Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000078920 2 1 2 91 6 127193067 127199439 GTACAACAGGAGGAAGTTGG 58 127192995 127193013 CACCAGACTTGTCCATGTG 59 Novel Rattus norvegicus 81 AC133316.1 ENSRNOG00000051541 ENSRNOT00000084878 2 1 1 102 6 127258268 127259508 TACTTCAGGAAGGCCAGAC 59 127262131 127262153 GTGGTCTCTGCTTTCTTATTCTC 59 Novel Rattus norvegicus 81 AABR07034598.1 ENSRNOG00000058711 ENSRNOT00000088004 1 1 1 72 11 80630348 80630366 TCACAGGTGCAGAAAGGAG 60 80633032 80633050 GTTCCAGTGCAATCCAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 3 1 1 65 1 124929436 124929454 AAAGTACACATGGGACGTG 58 124929126 124929407 AACAACCTTGTTCTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052639.1 ENSRNOG00000057160 ENSRNOT00000090066 1 1 1 84 3 67414432 67414451 ACCTGATGTGACTTTGAGCA 60 67414498 67414757 TTCCGTTGTGTCCTCTTCC 60 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 1 1 1 96 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949470 129951207 TGAAGAGCTTGTGGTCCTG 60 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 2 1 1 97 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949469 129951206 GTGAAGAGCTTGTGGTCCT 60 Novel Rattus norvegicus 81 AABR07065476.2 ENSRNOG00000061068 ENSRNOT00000088039 1 1 1 60 6 130187199 130187218 AACAGTTGGTAGACAGTCCC 59 130186713 130186731 ACATGATTTGCTCTGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065486.1 ENSRNOG00000060055 ENSRNOT00000088443 2 1 1 80 6 130796921 130797529 CTGAGAACTCAACTCCTGC 58 130797571 130797591 ACAGCCAATTCTTCAGATAGG 58 Novel Rattus norvegicus 81 AABR07021888.1 ENSRNOG00000061007 ENSRNOT00000082330 1 1 1 80 13 96756433 96756452 GATCTGCAACTCATTCACCA 58 96756494 96757885 TTCAGCAAAGACATACTGGG 58 Novel Rattus norvegicus 81 AABR07052730.2 ENSRNOG00000053273 ENSRNOT00000086513 1 1 1 82 3 71097719 71099278 CTACTAAATATGTTCCAGGTGTTGG 60 71097661 71097683 GGCTCAATAGAACTGATGAACTG 60 Novel Rattus norvegicus 81 AABR07004221.2 ENSRNOG00000057208 ENSRNOT00000081129 1 1 1 80 1 130547677 130547696 GGGAGAACCATAGTAGAACG 57 130544483 130547635 CTTGATTTCCAGGAATCGGT 58 Novel Rattus norvegicus 81 AC121220.1 ENSRNOG00000058990 ENSRNOT00000089556 3 1 1 88 6 135259894 135259912 TGTAACGCTAGTTGGAGCC 60 135259959 135262765 CTGGAGACTTAAATTACACAGCAG 60 Novel Rattus norvegicus 81 AABR07021996.1 ENSRNOG00000051880 ENSRNOT00000082633 3 1 1 80 13 101956922 101958374 TCTCTAGCAATGTGATGTACCA 59 101958413 101958433 CTGGAAAGGACTGGATAATGC 59 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 3 1 1 81 6 136942519 136942540 GGTGATTCTGTCTTTGTTAAGG 57 136942581 136942760 TCATCCTAGAAGTTGCTGGA 58 Novel Rattus norvegicus 81 AABR07065602.2 ENSRNOG00000056047 ENSRNOT00000087717 1 1 1 111 6 137122255 137122273 CAGGTCTCCTCCAAGTGTC 59 137121519 137121537 CAGAGTTCTCAACTTGCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000092216 3 1 2 85 3 83134277 83134295 GAGTGACTACCCAAGGGAG 59 83111299 83134233 CTTATGAAACCTGGAAATCCTGAG 60 Novel Rattus norvegicus 81 AABR07052897.2 ENSRNOG00000056421 ENSRNOT00000083244 3 1 1 82 3 83146337 83146358 ATCTGCTAGTCAACTCAAAGGT 60 83146176 83146294 ACTCCAAGGGTTGTCTTGG 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 1 1 1 94 1 134951534 134951724 TTTCCAATCTGGAGAAAGGG 58 134951459 134951477 AAACAAGTGCCTGGAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065883.1 ENSRNOG00000052278 ENSRNOT00000081721 2 1 1 80 6 143599303 143605627 AACTGATGGTGTCTACTCCC 59 143599242 143599262 AGAAGTTTCACTGAAGACCCA 59 Novel Rattus norvegicus 81 AABR07024491.1 ENSRNOG00000055392 ENSRNOT00000083207 1 1 1 80 16 1456843 1456861 TGGATCCTGAAATGCATGC 59 1455308 1456800 AAGAGGCTATGTAGGCAAGG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000079908 2 1 2 60 1 141944115 141944133 AGTGGCCTTGTAAACCCTC 60 141944870 141944889 AATTGTTGAGCATGAACACG 58 Novel DesignNoJunction Rattus norvegicus 81 AC126572.4 ENSRNOG00000059466 ENSRNOT00000086870 3 1 1 111 12 13210913 13210931 CAACTGAGGACCCAGAGTC 59 13211003 13212067 GGCAAACAAGAAACAAATGGAG 59 Novel Rattus norvegicus 81 AABR07024641.1 ENSRNOG00000055192 ENSRNOT00000081730 1 1 1 89 16 9896254 9896272 GAGTGAGAGTGACTGGGAG 59 9898030 9898048 CTATCTCAGGAGACTCGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035561.3 ENSRNOG00000058864 ENSRNOT00000079265 1 1 1 60 12 19705859 19705879 CACCACAGAAGATAGGAAGAG 58 19705901 19705919 ATGGACGATGGAGAGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004572.1 ENSRNOG00000054930 ENSRNOT00000084334 3 1 1 85 1 147696947 147696966 TGATTGATCACGGAGAGGAG 59 147697013 147697992 GATCTGTTCATCACCAAGGC 59 Novel Rattus norvegicus 81 AABR07024799.3 ENSRNOG00000060232 ENSRNOT00000087217 2 1 1 93 16 17223712 17237469 TCTTGCAAACAGAGCACAG 59 17223637 17223655 GACTTGGAGGACACATGAC 58 Novel Rattus norvegicus 81 AABR07024802.1 ENSRNOG00000051830 ENSRNOT00000077235 1 1 1 80 16 17435903 17456244 AGGAAGATAAGTCTTGACTCAG 57 17456285 17456303 ACCTGTTGAAGTGGAAGTG 58 Novel Rattus norvegicus 81 AABR07066828.1 ENSRNOG00000056706 ENSRNOT00000086341 2 1 1 80 9 18085968 18098663 GTTCTGCCCTAAAGGAGCA 60 18098703 18098725 CTCTCCAATAAAGCTCTACACTG 59 Novel Rattus norvegicus 81 AABR07035778.2 ENSRNOG00000055080 ENSRNOT00000085667 1 1 1 80 12 22297384 22298017 GACCATGTCGGGTATTGCT 60 22298060 22298079 GGACAGTAAGTACAGCAGGG 60 Novel Rattus norvegicus 81 AC133383.1 ENSRNOG00000060876 ENSRNOT00000084549 1 1 1 84 1 162733388 162733670 GGGATAGTTTCTGATTCTTGGA 58 162733715 162733733 CTTTGCTCATGTACAGCAC 57 Novel Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 3 1 1 60 16 29984016 29993403 TGGGATGCTTTCAATACTGAC 58 29983976 29983997 CACTTAACTCCTTTCTCCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053870.1 ENSRNOG00000058774 ENSRNOT00000086934 2 1 1 80 3 131609592 131609610 GAACATCTGACACCAGCCT 60 131609652 131639446 GTGTCAATTTCTCTGTCTGCC 60 Novel Rattus norvegicus 81 AABR07035835.1 ENSRNOG00000054158 ENSRNOT00000085474 1 1 1 80 12 24447292 24447312 GAAACCACTACAAACCATAGC 57 24442995 24447251 CAGCTAGAGTCACCTTATCG 57 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 3 1 1 145 9 27326026 27326044 CATCCAGAGAAGCGGAGAG 60 27325778 27325796 GAGTCCCATCCTCTGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025303.1 ENSRNOG00000059212 ENSRNOT00000079403 1 1 1 80 16 32656089 32656107 ACCACATCTCAGAAAGTGG 57 32656148 32656307 CCATTAAATCTGGAACCAACAC 58 Novel Rattus norvegicus 81 AABR07053885.1 ENSRNOG00000056548 ENSRNOT00000089258 1 1 1 89 3 132532302 132535271 AAGTGCAAGGATGATGACAG 58 132532232 132532250 TCTGTACTCGGAACAAGGG 59 Novel Rattus norvegicus 81 AABR07025385.1 ENSRNOG00000054260 ENSRNOT00000077277 1 1 1 80 16 36260082 36261500 CACATCAGGACATTATTCACTCAG 60 36260025 36260046 TTCAAACATATCAGCTTCAGGG 59 Novel Rattus norvegicus 81 AABR07067210.1 ENSRNOG00000053227 ENSRNOT00000079131 1 1 1 83 9 35148341 35148360 GAGCAGCAAAGTTGATTGTG 58 35148402 35150104 CCCATGGATACTCATCATATCTG 58 Novel Rattus norvegicus 81 AABR07054025.1 ENSRNOG00000052276 ENSRNOT00000085307 2 1 1 80 3 136596730 136596748 AATCTCCTTCTCCCAGGGA 59 136596226 136596687 GAAGTTGTCAGTCCAGTCCT 59 Novel Rattus norvegicus 81 AABR07025594.1 ENSRNOG00000060299 ENSRNOT00000080438 2 1 1 81 16 41038165 41038186 TGATGGTAAGAGATGTCAGACG 60 41038228 41039868 CATGTGACTTGCTCGTCTG 59 Novel Rattus norvegicus 81 AABR07025594.1 ENSRNOG00000060299 ENSRNOT00000080438 3 1 1 82 16 41038164 41038185 GTGATGGTAAGAGATGTCAGAC 58 41038228 41039868 CATGTGACTTGCTCGTCTG 59 Novel Rattus norvegicus 81 AABR07036024.1 ENSRNOG00000052944 ENSRNOT00000081483 2 1 1 81 12 30946798 30948807 TGACGGGAGGTCTTAAACC 59 30948852 30948870 GAGAGCAGGCAGATATCGG 60 Novel Rattus norvegicus 81 AABR07054315.1 ENSRNOG00000061670 ENSRNOT00000090434 1 1 1 80 3 147501125 147501715 CCAGAACACAGAAAGTGGG 58 147501757 147501777 TGTACAATGCCCTTTATGGTG 59 Novel Rattus norvegicus 81 AABR07036089.1 ENSRNOG00000055993 ENSRNOT00000086585 3 1 1 82 12 34225972 34231594 CTGATACCCAAGCTGTCTC 57 34231638 34231658 CCACTCAAACTGAAGTTTCTC 57 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 3 1 1 65 3 149259514 149259533 CTTCGCCTAGGACTACAGTG 60 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005779.4 ENSRNOG00000056571 ENSRNOT00000085384 1 1 1 88 1 198168211 198168229 CAGTCTACACCGTACTCCC 59 198164647 198168160 CTTTCTGACCATGTGATGCC 59 Novel Rattus norvegicus 81 AABR07005779.3 ENSRNOG00000054961 ENSRNOT00000086620 1 1 1 60 1 198242637 198242655 TTAGTCAGAGCATTTGCCC 58 198242595 198242613 TAACTGGAGTCACCGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054437.1 ENSRNOG00000055407 ENSRNOT00000082230 1 1 1 80 3 153830442 153830462 TCAGAGACTCAGATTCACTCC 59 153830155 153830401 GTCACATTGTACCTCAAGGC 59 Novel Rattus norvegicus 81 AABR07054445.1 ENSRNOG00000054537 ENSRNOT00000089702 2 1 1 60 3 153935313 153935331 ACGTAGACAGAGACAAGGC 59 153934277 153934295 TGGATTGTTGCCACTTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 2 1 1 61 9 49134035 49134053 AAGAAGACACATCAAGCCA 57 49134078 49135004 GAAGCTGTTGAGATCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 2 1 1 80 3 156426590 156453264 AGAGTGTACTATGACCCTTCC 58 156426530 156426548 ATGTGGAGGTAGGAACTGG 58 Novel Rattus norvegicus 81 AABR07067742.1 ENSRNOG00000061465 ENSRNOT00000089343 2 1 1 84 9 60370919 60372314 TTCTCCAAATACAAGTCCCAG 58 60372359 60372378 GAATTGGCAGTCACAAATGG 58 Novel Rattus norvegicus 81 AABR07036413.2 ENSRNOG00000057715 ENSRNOT00000080265 3 1 1 66 12 42566880 42566898 GATGAAGGAGCGATGTCTG 58 42568532 42568550 GGAAGAACAAAGGCTTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 2 1 1 60 12 42899758 42902405 GGGAATCCCAAAGTAACAGAC 59 42899718 42899737 TTGGATTATTGCGGATGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026143.1 ENSRNOG00000051381 ENSRNOT00000077335 3 1 1 88 16 65369848 65369866 AGACGGAGTTTGTATCGCA 59 65369283 65369302 TCGTAATCTACCTCAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026144.1 ENSRNOG00000052907 ENSRNOT00000079928 2 1 1 80 16 65430056 65521970 CTAAGATCCTTTCAAGCCCA 57 65522013 65522031 ACAGAAGACTGTCCAACTG 57 Novel Rattus norvegicus 81 AABR07067791.1 ENSRNOG00000055231 ENSRNOT00000082250 2 1 1 88 9 64218409 64222777 GTATTGTACTGGAGTACATTGTACG 60 64218345 64218363 CAGGAGACTGACGACTACC 59 Novel Rattus norvegicus 81 AABR07026246.1 ENSRNOG00000060471 ENSRNOT00000083782 3 1 1 61 16 69570508 69570527 AATGCTTGGGTTAACTACCA 57 69571377 69571395 CCTCTTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067852.1 ENSRNOG00000061019 ENSRNOT00000085370 2 1 1 80 9 67817149 67817167 AAGTGCAGTCACTGTTACG 58 67817210 67824364 CATAGCCAGTTCCTTGTCAG 58 Novel Rattus norvegicus 81 AABR07006038.2 ENSRNOG00000061253 ENSRNOT00000088263 2 1 1 89 1 214974848 215004920 TATCAAAGGAAACGCAAGGA 58 214974778 214974796 CAACATGCTCTGGAGACAG 58 Novel Rattus norvegicus 81 AABR07054662.2 ENSRNOG00000058272 ENSRNOT00000090077 3 1 1 90 3 166293872 166295904 GAACCAACAGATGTGAGGAG 58 166293801 166293819 CAATTCCACGATGTCACCC 59 Novel Rattus norvegicus 81 AABR07054755.2 ENSRNOG00000060549 ENSRNOT00000080717 2 1 1 80 3 168785840 168787679 GACCACTGTATAAAGAACACCA 58 168785781 168785801 CTAAATCTTTGCTCCAGTCCA 58 Novel Rattus norvegicus 81 AABR07026473.1 ENSRNOG00000057840 ENSRNOT00000085640 2 1 1 95 16 77995695 78013010 TCCTTTCTGCAGAGCTGAG 59 78013068 78013087 TTGTTGTCGTACTCTGAGGG 60 Novel Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 1 1 1 60 1 227289073 227290251 CGGCAATCCAGATCATGTG 59 227290274 227290293 ACTGATGCCAGAATGATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006428.1 ENSRNOG00000055431 ENSRNOT00000079050 1 1 1 60 1 233254966 233254985 GGGCACTTCATATCCAAACC 59 233254925 233254944 ACTGTTTCTGAGGAAGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068222.1 ENSRNOG00000055585 ENSRNOT00000080946 3 1 1 82 9 91414738 91414858 CCTAAGATTACAGAAAGAAGAGGG 59 91414679 91414698 AAACAAGAGCTTCACAACCA 58 Novel Rattus norvegicus 81 AABR07006656.2 ENSRNOG00000055788 ENSRNOT00000082007 3 1 1 80 1 244800242 244800261 TCATAGGCTTCTGTCTTTGC 58 244799108 244800199 GAGTTTCTTGACCAGTGGT 57 Novel Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 1 1 1 61 1 244877738 244907923 TTGCAGAATCCTCCCAGTG 60 244907943 244907966 CTCCTGTTGCTGTTAAAGAATAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068350.1 ENSRNOG00000057530 ENSRNOT00000088137 2 1 1 80 9 100261101 100261119 TGAACCTTTCCCGATACGG 60 100259630 100261058 ATGCCTTTCCAAGCAAACAG 60 Novel Rattus norvegicus 81 AABR07026704.1 ENSRNOG00000053217 ENSRNOT00000083978 2 1 1 84 16 90280281 90282431 GGGAGGAAGTTATAATGTACAAGC 59 90280220 90280238 TGTGTAAACCATGGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026912.2 ENSRNOG00000060172 ENSRNOT00000092050 3 1 1 114 17 4567803 4568078 CAAAGATACAACGAAGCGAG 57 4568152 4568173 ACTCACCTTCATCTTCTTTCTG 58 Novel Rattus norvegicus 81 AABR07026921.1 ENSRNOG00000053032 ENSRNOT00000083367 2 1 1 87 17 4896679 4920868 TGACTAATGGAACTTCCCAG 57 4920918 4920936 AATATTCCACTCCGATGGC 57 Novel Rattus norvegicus 81 AABR07056390.2 ENSRNOG00000056699 ENSRNOT00000077294 1 1 1 80 7 23246524 23246547 CGATTGACTACCTATATTCACCAC 59 23183847 23246491 CATCTCCTTTATCATAGATGTTGGG 59 Novel Rattus norvegicus 81 AABR07026972.1 ENSRNOG00000056679 ENSRNOT00000079209 3 1 1 92 17 7966506 7966524 GTCTCCTCAGGAACCTCAG 59 7966579 7966887 AGAACCAACTCATTTCCTGG 58 Novel Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 1 1 1 71 9 113788532 113800862 CAAGTGCCTCATTCAGGAG 58 113788479 113788497 ATGCACTCCTTACAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042652.1 ENSRNOG00000061211 ENSRNOT00000081065 3 1 1 93 19 1445509 1445527 TTGAGCCCTCCTTCTTCAC 59 1436615 1445458 CTTGGATCTCTTCTAGAAATGTTCC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 2 1 1 61 7 28372131 28372312 TGAAGGTTGACGACCTCTC 59 28372337 28372355 GCTCACAAGATCTGGAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056605.1 ENSRNOG00000061490 ENSRNOT00000077675 1 1 1 123 7 31988092 31988110 TCAAGCTCTGTTGTGGGAG 60 31988196 32049205 TTGTCAAACCTTTCAACGGG 59 Novel Rattus norvegicus 81 AABR07042733.1 ENSRNOG00000053984 ENSRNOT00000089379 2 1 1 88 19 6013280 6013299 TAATGTGGGTAGCACATGTG 58 6004071 6004089 AGATCCAGTGGGTAAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042780.1 ENSRNOG00000056140 ENSRNOT00000079386 3 1 1 93 19 8253057 8254507 AAGTTCTTTCGTTCTTGGCT 58 8254563 8254581 AACAGCATGTGAGACTGGA 59 Novel Rattus norvegicus 81 AABR07042802.1 ENSRNOG00000052398 ENSRNOT00000086667 3 1 1 62 19 9567058 9567076 GGAAGGAAATCAGCCAACG 59 9566623 9566641 AAGAACATGGCAGAGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 1 1 1 69 19 10266730 10266748 CTACTACCTCTGCCTCCAC 59 10261439 10261457 TTGTAGAACCGGGTCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 3 1 1 71 19 10266730 10266748 CTACTACCTCTGCCTCCAC 59 10261437 10261455 CCTTGTAGAACCGGGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056680.1 ENSRNOG00000054516 ENSRNOT00000078509 1 1 1 130 7 35634685 35739097 GAAGTCAGAGGACTCTGCC 60 35634573 35634593 CCACCCTTTGAATTCTCTGTC 59 Novel Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 2 1 1 60 17 18866611 18866910 AGATTCTGCCCTGTCAGAG 59 18866932 18866952 GACTGAATGAGACTTTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069067.1 ENSRNOG00000060166 ENSRNOT00000077688 3 1 1 66 8 6963067 6987214 ATCTTTGCCCAGTTCAAGG 58 6963019 6963037 TTTGTAGGCAGTCTGACAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07042825.1 ENSRNOG00000061468 ENSRNOT00000078065 2 1 1 123 19 11064657 11068176 TCTCAAGATAAAGGGCAGGG 59 11068262 11068280 TCTGGATCTGGACATCCCT 59 Novel Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545,ENSRNOT00000080819 1 2 2 81 17 19056494 19056513 AGAAGACAAGGCTACTGGAG 59 19056554 19056912 GGAGTTCTCCTTTCTTTCATGG 59 Novel Rattus norvegicus 81 AABR07069211.1 ENSRNOG00000054478 ENSRNOT00000083731 1 1 1 69 8 12459038 12459056 ATGCCCAGACTGTTCAGAC 60 12457449 12457467 ACTTCTTGGAAGCTCAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043028.1 ENSRNOG00000059724 ENSRNOT00000082309 1 1 1 85 19 17755224 17756104 GATATGGGTTTGTGCTGGG 59 17756153 17756171 AGAACAGAAGACAGGGTCC 59 Novel Rattus norvegicus 81 AABR07006911.1 ENSRNOG00000053954 ENSRNOT00000080845 2 1 1 129 1 270729800 270729818 CAGAAGTACCTGGACAACG 58 270712206 270712224 TAGATTCTGCCAGGTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043031.2 ENSRNOG00000053855 ENSRNOT00000087349 1 1 1 80 19 18035548 18035566 CTGTTGACTTCAGCCTCAG 58 18035607 18072188 ATTAAGGAATACCTTGGCTGTG 59 Novel Rattus norvegicus 81 AABR07057219.1 ENSRNOG00000052947 ENSRNOT00000091352 3 1 1 66 7 61163831 61163849 GCTTAAGATCTCCATGGGC 58 61154323 61154342 GCATACTGTACAAGCTGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 3 1 1 92 1 273968429 273969815 AAAGACTGTTAGCGGTCTG 58 273968355 273968374 AAAGAGGGCTTATGAACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057415.2 ENSRNOG00000056418 ENSRNOT00000087453 3 1 1 93 7 70151933 70152621 CTCCTTCACAGAGCCAGTC 60 70151858 70151879 GTTAAATCCAAATGGCAGTTGG 59 Novel Rattus norvegicus 81 AABR07043525.1 ENSRNOG00000055482 ENSRNOT00000088267 2 1 1 82 19 29169404 29169423 GTTTCTCGATCTTGGAGAGG 58 29137185 29169359 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07027571.1 ENSRNOG00000052547 ENSRNOT00000083376 2 1 1 81 17 37358970 37360542 GAAGTAGAGGGAGAAGGTGTC 59 37360580 37360603 GCATTTCAGTAGGAAGTACTTCTG 60 Novel Rattus norvegicus 81 AABR07043615.1 ENSRNOG00000061386 ENSRNOT00000088621 1 1 1 80 19 32109653 32109672 CTGATGATGCTTCAGTGCTG 59 32107152 32109610 TTCCCTCTTAAAGCTGGGC 60 Novel Rattus norvegicus 81 AABR07057421.3 ENSRNOG00000059728 ENSRNOT00000079739 3 1 1 81 7 70264843 70264861 TTGTTCCTGGAGAGGAAGG 59 70257724 70264804 CTTGATATGTCATGGATATCGAGAG 59 Novel Rattus norvegicus 81 AABR07043642.1 ENSRNOG00000051454 ENSRNOT00000082783 3 1 1 60 19 33801213 33801235 GAGGACCCTTCTATGAATAGGAG 59 33800644 33801193 CTTCTTTGTTGCTCCTTGC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 1 1 1 84 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701385 81701403 CAGAGTCTCTGTGCCAGAC 60 Novel Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 2 1 1 88 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701381 81701399 AAACCAGAGTCTCTGTGCC 60 Novel Rattus norvegicus 81 AABR07007391.1 ENSRNOG00000058141 ENSRNOT00000080120 1 1 1 80 2 12128489 12130270 GAATGGGAACCAGATTGGA 57 12128427 12128445 CACATTAGTCAGCGTACCT 57 Novel Rattus norvegicus 81 AABR07070078.1 ENSRNOG00000060536 ENSRNOT00000081870 2 1 1 85 8 48088891 48093652 GGCATGACATTAGTGGAGAG 58 48088825 48088843 ATTGCGTTCATCTGGTTGG 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000082351 3 1 3 80 7 97358541 97421371 ATCTTCCTTCTGAAGTTCTTCC 58 97358482 97358501 CTCTTCTGCATGATCTTGGA 57 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000090860 2 1 3 84 7 97462386 97462407 GAACATGGACTTACTGTTTGGA 59 97358538 97462342 CTAGGAAGAACCTCTGACCT 58 Novel Rattus norvegicus 81 AABR07058011.1 ENSRNOG00000060418 ENSRNOT00000089087 3 1 1 148 7 98125595 98132018 TCTCACCTGCAGGAATCAC 59 98125465 98125483 TTGTGAAGAGCAGAGTGGA 59 Novel Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 2 1 1 77 2 22864608 22867898 TTGTTTGCCAGACAAAGGG 59 22864549 22864567 CAATGTCATGGGAGAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058017.2 ENSRNOG00000053624 ENSRNOT00000079983 2 1 1 81 7 98718865 98722188 ACTTATTAGTTGGAGGCCGG 60 98718803 98718821 TAGACACGAAGTCCATGGC 60 Novel Rattus norvegicus 81 AABR07007691.1 ENSRNOG00000058293 ENSRNOT00000089699 1 1 1 80 2 24345302 24353314 TCATGACACAAGAAAGGCTC 58 24345241 24345259 CTCTCGAGTTTCTCACCAG 57 Novel Rattus norvegicus 81 AABR07058174.1 ENSRNOG00000054723 ENSRNOT00000084323 3 1 1 60 7 103622203 103622908 TAACGGATTCATCCGGAGC 60 103622931 103622950 TCCTGCCTTTGGAATCTCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07041514.1 ENSRNOG00000051679 ENSRNOT00000077586 1 1 1 91 X 132099816 132099834 GACATGGATCCGACTTTGC 59 132099655 132099764 CTTGAAAGCCAAATACTGTGTC 58 Novel Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 3 1 1 64 10 30546878 30555478 TAATCTGCAACTGCCAGCT 60 30546832 30546850 TCCCTTTGCAATGGTACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007717.1 ENSRNOG00000056427 ENSRNOT00000084325 2 1 1 83 2 25564979 25564997 GAAACCTGATGCAGACCAC 59 25565475 25565493 GACATCAGTCCTCTGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041778.3 ENSRNOG00000058144 ENSRNOT00000081630 3 1 1 80 X 139484252 139486457 CATTTCAGAGTACCTGTTGCT 58 139486496 139486517 CTTGAATACTGACCATCAAGCT 59 Novel Rattus norvegicus 81 AABR07007793.1 ENSRNOG00000061197 ENSRNOT00000083741 3 1 1 83 2 28658167 28658186 AGAACAGTCACTCTCCAGAG 59 28657581 28658124 CTCTTCCTGCTATAACCTTCGA 60 Novel Rattus norvegicus 81 AABR07070265.1 ENSRNOG00000056498 ENSRNOT00000084245 1 1 1 81 8 62124508 62124526 TTTGAGCCAGGAAGAACAG 58 62125963 62125981 TAGCTCCACAGTGAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.4 ENSRNOG00000057177 ENSRNOT00000089816 1 1 1 93 10 41816367 41816390 CCAAATATCAGGAAAGAGATGGAG 59 41795055 41816315 TCTTGGCATCCTGCTACAG 60 Novel Rattus norvegicus 81 AABR07007802.2 ENSRNOG00000056276 ENSRNOT00000077915 1 1 1 80 2 28877943 28877963 TGTATGATGAGTGGATTGCTG 58 28873335 28877904 ATGGATAACATATCCTCTGCAC 58 Novel Rattus norvegicus 81 AABR07007802.2 ENSRNOG00000056276 ENSRNOT00000077915 2 1 1 80 2 28877945 28877965 ACTGTATGATGAGTGGATTGC 58 28873337 28877906 GGATAACATATCCTCTGCACTG 59 Novel Rattus norvegicus 81 AC095267.1 ENSRNOG00000051809 ENSRNOT00000077229 2 1 1 90 X 156225837 156225856 CTTCATGAGAGTGTGCACAC 59 156221240 156225784 CCGACCTGACCTTTCTCAG 60 Novel Rattus norvegicus 81 AABR07058608.1 ENSRNOG00000060713 ENSRNOT00000081449 1 1 1 78 7 127566845 127566863 ATCCACTGAGAATCGTTGC 58 127572169 127572187 GATGCAGTAAGGTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007853.1 ENSRNOG00000056525 ENSRNOT00000086168 3 1 1 139 2 31386333 31388254 ATGTAAACACATTGAGGCCT 58 31388355 31388374 CTTCTAGCACTGTCTTGACC 58 Novel Rattus norvegicus 81 AABR07058639.1 ENSRNOG00000053745 ENSRNOT00000091728 2 1 1 81 7 129340957 129340977 CAGTATACAGACTCTCAGCCC 60 129339961 129340914 TTCAACAAGCCAAGCTGTG 59 Novel Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 3 1 1 105 2 32297559 32297699 GATGCTTACTGCAGAACTGC 60 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07059153.1 ENSRNOG00000059246 ENSRNOT00000081010 1 1 1 72 4 5424328 5424346 TTCCTAGACTCCCATGTGC 59 5417550 5417568 ATCCTTCATGTTGAGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059153.1 ENSRNOG00000059246 ENSRNOT00000081010 3 1 1 73 4 5424328 5424346 TTCCTAGACTCCCATGTGC 59 5417549 5417567 GATCCTTCATGTTGAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070635.1 ENSRNOG00000053862 ENSRNOT00000088767 2 1 1 83 8 78320464 78320482 AGAAGAGGACAGCAGATGC 60 78318841 78320417 CTTCAGGATCCAAACCACG 59 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000082294 1 1 2 80 4 16827535 16827553 TTTGAGCCTTCACTGTCTG 58 16827597 16828001 GATATGTGGTACAGCTGCC 58 Novel Rattus norvegicus 81 AABR07028281.1 ENSRNOG00000054750 ENSRNOT00000090527 1 1 1 81 17 63034065 63034083 GTTTAGCTCCCAGTCACGA 59 63033612 63034022 AAAGTCACGTTTCCAACTCTC 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089706 1 1 2 80 8 82416655 82417944 AACTTACCTTTAGACCTCACTG 58 82417985 82418003 TCTTTGAACTTCTGGTCCC 57 Novel Rattus norvegicus 81 AABR07028469.2 ENSRNOG00000051853 ENSRNOT00000084039 2 1 1 84 17 71451028 71451047 AATCAGCTTCTCAAGGACAG 58 71451094 71522294 CCTTTAGTGCCAACCTTCC 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 1 1 1 60 8 84886688 84893246 AAAGAGCAGCAGACAAGGA 59 84886646 84886666 TCTTCCTCTTCCTCTTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 1 1 1 62 17 72120213 72121732 AATACGCAAACACATGCCA 59 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070816.2 ENSRNOG00000054728 ENSRNOT00000090962 3 1 1 85 8 85577138 85577377 GCATTGTTTGGTTGGAGCA 60 85577421 85577444 CCATCTAGGACAATTTCGATTCTG 60 Novel Rattus norvegicus 81 AABR07028513.1 ENSRNOG00000052052 ENSRNOT00000085056 1 1 1 80 17 73142336 73142354 ATCATGGTACTCCACAGCC 59 73142398 73143338 CAACCGTGGCTTCTTTCTC 59 Novel Rattus norvegicus 81 LOC103694645 ENSRNOG00000055663 ENSRNOT00000091347 3 1 1 88 4 33181879 33181898 CATCCAGTAAATGCTGCCTG 59 33181948 33197842 GACTTCGTTCTTTGTGGGTG 60 Novel Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 2 1 1 61 4 39637142 39637160 ATAACGTTTGCACCTGTCG 59 39637005 39637117 CTCACAGATGCTTGTCTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07028765.2 ENSRNOG00000059052 ENSRNOT00000087204 1 1 1 60 17 85196131 85196149 TAAGGACACCAGCTACTCC 58 85194657 85194675 ATGCTTCAGCCATAGGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071198.1 ENSRNOG00000053034 ENSRNOT00000091570 1 1 1 80 8 104362467 104362486 ACCTTGGAAACAATGTCCTG 58 104359915 104362425 GCAGTTTACCTGACTTCCTG 59 Novel Rattus norvegicus 81 AC110102.2 ENSRNOG00000058227 ENSRNOT00000089694 3 1 1 81 4 44660402 44663694 GGAGAAAGTCAAGGGTTCAG 58 44660340 44660360 CAGGGACACTAGAATTTCTGG 58 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 1 1 1 80 17 86744823 86744843 GAGTTGCAAAGAATGCATCTG 59 86741674 86744781 CCCAGGAGATAGCTTCTCG 59 Novel Rattus norvegicus 81 AABR07071332.1 ENSRNOG00000058189 ENSRNOT00000090179 1 1 1 96 8 109773217 109773727 CCTCAGGTCTCAGGTTCAG 59 109773139 109773157 GATGCTGTCGGTGATTCTG 59 Novel Rattus norvegicus 81 LOC102550537 ENSRNOG00000061575 ENSRNOT00000086320 1 1 1 80 8 112398668 112411483 TCATATCTCCACAGATCCTGC 59 112411525 112411543 CATGTTGCCAAGGACACTC 59 Novel Rattus norvegicus 81 LOC102550537 ENSRNOG00000061575 ENSRNOT00000086320 2 1 1 80 8 112398670 112411484 ATATCTCCACAGATCCTGCT 58 112411527 112411545 TTCATGTTGCCAAGGACAC 59 Novel Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 1 1 1 60 4 59196421 59202839 CAAACTTTACTACTGCTGAGGG 59 59196382 59196401 TAAACTCTAGCACGTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008424.1 ENSRNOG00000056794 ENSRNOT00000085759 1 1 1 80 2 57943693 57944458 CTTTCTACAATGTCCGAACCT 58 57943633 57943652 CATCTGACAGCAGTAGATGG 58 Novel Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 3 1 1 101 8 114131945 114131963 CACATGAAGTGGCTGATCG 59 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081263 3 1 3 93 2 59872789 59877547 GCCTAAAGGCAAAGACTTTCC 60 59877599 59877620 ATTTCTTTCCGGTAGGTAGGAG 59 Novel Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650,ENSRNOT00000078712 1 2 2 80 4 68429793 68432750 TATGATTATTACACGGGTGCAG 59 68432788 68432809 AAGATTAATGTGCTCAAGAGGG 59 Novel Rattus norvegicus 81 AC123500.2 ENSRNOG00000053935 ENSRNOT00000087266 2 1 1 96 19 41919581 41928154 TCAGTCTATACCCTTCGGG 58 41919503 41919521 GATGGTTGTCCTGTGAGTG 58 Novel Rattus norvegicus 81 AABR07008594.1 ENSRNOG00000058273 ENSRNOT00000080790 3 1 1 84 2 65870809 65870829 CCAACACTCAGTGAAATCAGC 60 65851558 65851581 CCTGATAAGTTATCTGCTTCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071567.1 ENSRNOG00000053523 ENSRNOT00000083235 3 1 1 66 8 122328063 122328084 GAACACAAGTCTGAAGTATGTC 57 122326411 122328038 TGACACAACCTAGAATCAGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043844.1 ENSRNOG00000059155 ENSRNOT00000082617 2 1 1 87 19 43534888 43534906 CTGGAGTCTGAGGACTCAG 59 43534956 43536181 TGATCCTACTGGAACACTGG 59 Novel Rattus norvegicus 81 AC096072.1 ENSRNOG00000052736 ENSRNOT00000080286 3 1 1 63 4 81789787 81789806 CTAATGGTTCGAACGTTCCC 59 81791888 81791906 ATTCTTCTGTTCGCTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 3 1 1 85 2 69809757 69809777 CCCAAATCTTCACTGAAACAG 58 69763244 69803544 TCAGTACATTTGCACACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07043877.3 ENSRNOG00000056500 ENSRNOT00000088864 3 1 1 89 19 45441918 45460471 CATCTTGAGAAGATACCAATCTTCC 60 45460517 45460536 ATCTTGGATGTTGTCCTGGA 59 Novel Rattus norvegicus 81 AABR07060589.1 ENSRNOG00000061189 ENSRNOT00000089053 2 1 1 139 4 82481808 82481827 TATACATCGCTGTTGTGCCT 60 82484999 82485658 TTTCCTGCACACCTTTCCT 60 Novel Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 2 1 1 152 2 73912288 73956522 AATGTTGTTCAGGACTCAGC 59 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07008844.1 ENSRNOG00000061700 ENSRNOT00000079902 3 1 1 70 2 76366118 76366136 AAAGTCCCTACAACCTGGG 59 76364932 76366084 AGATCCTTGGCACTTTCTG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 2 1 2 153 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131382027 131382047 AGGAATTTAGAGGCCACTCTG 60 Novel Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 3 1 1 66 7 135124911 135124929 ATAATTGCTTCCAGGTGGC 58 135124959 135146084 TTTCATTGTCAGGGTGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009351.1 ENSRNOG00000058574 ENSRNOT00000079444 2 1 1 94 2 93847274 93847293 ATTTGATGTGAAGAACCGGC 59 93845651 93847217 CACAGCTTGCTGAGTTGTG 60 Novel Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 2 1 1 70 2 119558797 119560949 GAATAATGTCCACTCCTTGGT 58 119560978 119560999 TCCTGCAGAAATATCCTTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010033.1 ENSRNOG00000053304 ENSRNOT00000077121 3 1 1 60 2 121570264 121570282 AGGTGATAGAATGGCAGCT 59 121570222 121570240 AGCGACATGAAGTACAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010342.1 ENSRNOG00000053123 ENSRNOT00000077766 3 1 1 98 2 132846552 132847598 TCTGAAATGACAGGTTTGGA 57 132847658 132847677 GATTTGGATTCAGTTGGCTC 57 Novel Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 2 1 1 105 2 144175709 144178113 GATTAACACGACAGGTGCT 58 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 3 1 1 105 2 144175708 144178113 GATTAACACGACAGGTGCTG 59 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 2 1 2 101 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399215 156399589 AACCCATCAAGTTCCATAGG 57 Novel Rattus norvegicus 81 AABR07011145.1 ENSRNOG00000059427 ENSRNOT00000078981 3 1 1 80 2 158978148 158978167 TATTGTCAACCACTTCCCAC 58 158963682 158978107 ACCTTTACTTTCTTGTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011512.1 ENSRNOG00000061049 ENSRNOT00000089194 2 1 1 120 2 162986972 162988715 TTTCTTTCGAGATTCCTCCAG 58 162988797 162988815 TGGTAAATGACTTTGCCGA 57 Novel Rattus norvegicus 81 AABR07011841.1 ENSRNOG00000056204 ENSRNOT00000084889 1 1 1 80 2 171693073 171693093 TGCTGGATATGAGATGAACAC 58 171693135 171693560 GCCTTTGCATAAACCTGGA 58 Novel Rattus norvegicus 81 AABR07011991.1 ENSRNOG00000054279 ENSRNOT00000078292 1 1 1 80 2 180545502 180546558 ACTGCATTGTATGAAGAGACTG 59 180545443 180545462 CAGTTTCAACGGTCATTCCC 60 Novel Rattus norvegicus 81 AABR07011991.1 ENSRNOG00000054279 ENSRNOT00000078292 2 1 1 81 2 180545502 180546558 ACTGCATTGTATGAAGAGACTG 59 180545442 180545461 CCAGTTTCAACGGTCATTCC 60 Novel Rattus norvegicus 81 AABR07011996.1 ENSRNOG00000061272 ENSRNOT00000088226 1 1 1 108 2 180878456 180880392 TGTTTGTGGCATTGCAGAC 60 180880462 180880482 AGTTGTTGAAACCTGAAGCAC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 1 1 1 90 2 184916590 184916843 TTGTGTCATGTGGACCTCC 60 184916518 184916536 TATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012711.1 ENSRNOG00000054483 ENSRNOT00000084047 3 1 1 82 2 203049464 203049488 AGAGGAGTTTCTACTGAAGTATCAC 60 203049527 203049971 TTAGAGGCTCAGCTTTGTCC 60 Novel Rattus norvegicus 81 AABR07072374.1 ENSRNOG00000051972 ENSRNOT00000083647 2 1 1 61 14 11490454 11490475 GTTAGAATTAAGCAGTGGGTCC 59 11488306 11490432 TCTGACTCAGCACAACCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07014512.2 ENSRNOG00000058092 ENSRNOT00000091701 2 1 1 60 14 18855562 18855583 GCTCTTTAAGATGGCTCTTTGG 60 18855604 18855814 ATCTGCACTTTGCTCTGGT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 1 1 1 97 14 24842985 24877878 GTACTACATGTGCCCAGGT 59 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013410.3 ENSRNOG00000059757 ENSRNOT00000085253 3 1 1 99 2 236047248 236051842 GAAAGACCCAAAGAGACGG 58 236047167 236047185 AATAGAAAGCAGATGCGGT 57 Novel Rattus norvegicus 81 AABR07013698.1 ENSRNOG00000052331 ENSRNOT00000087623 2 1 1 87 2 251179686 251180985 TCTACGGCTTTACCCACTC 59 251179617 251179636 TAAGGAGCCAAGGAAGTTGG 60 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 3 1 1 80 15 35953352 35953373 AGGGTTGATTTCTGCAAATCTG 60 35955758 35955779 ATTAGAGCATGAGAGCTTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443 2 1 4 81 7 115868315 115873154 GAAACACTCCAGATAACTTGGA 58 115868255 115868273 TTAACCACCATGTCCTCCC 59 Novel Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 2 1 1 60 10 101989816 101989834 CACTGAAAGCCAAGAGTGG 59 101989859 101989878 CCATTCCAGAGCCTTAGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 3 1 1 67 X 57058436 57058454 GACAAGACTCGTTGGTCCA 60 57058219 57058239 TTCGTGTCCTTCTTTGTAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000034522 2 1 4 80 3 140156542 140160340 GAAATTCCATGCACAGACTG 58 140160382 140160401 AGACTCAGATATGTTGGCAC 57 Novel Rattus norvegicus 81 AABR07038464.1 ENSRNOG00000061492 ENSRNOT00000085116 3 1 1 84 X 50184661 50184680 AAAGAGGAGAGGTACTTGGT 58 50184518 50184615 TTTGCCTTGTATGTACGTGG 59 Novel Rattus norvegicus 81 SNORA11 ENSRNOG00000052201 ENSRNOT00000087193 1 1 1 61 3 103986623 103986641 CTGAGGAATGGCTCCTCTG 60 103986666 103986684 CCTCCTCACATCATGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063082.1 ENSRNOG00000031342 ENSRNOT00000050986 1 1 1 60 6 17759990 17760008 ACAGTCAGAATGGGAAGGA 58 17760032 17760050 TGGTGAAGGGACATCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051874 ENSRNOT00000077463 3 1 1 70 17 28020951 28020969 TTATCCATTGCACTCCGGA 59 28020899 28020918 ATTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051714 ENSRNOT00000087464 2 1 1 60 4 165622037 165622055 CTCCTGGGTAGTGTATGCT 58 165621995 165622015 TGTCTCCTAGGTCCCTTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059787 ENSRNOT00000077907 2 1 1 60 4 145403281 145403299 TACAAGCTTGCTCCATCCA 59 145403239 145403258 ACCATTCCTGGAGATACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 2 2 4 80 19 17428687 17428706 ACCCTTAAGGTTTCCATCTG 57 17428534 17428645 TGAAGTTTCTGAACCTGCTC 58 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 2 2 3 73 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386149 121386167 GCTTCTGTCCAGACTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000057756 1 2 5 80 6 114783596 114818954 AATGCATTACAGATGAGTACCC 58 114783537 114783555 GAAATCCTCTAGCAGGCTC 57 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000057756 3 2 5 80 6 114818957 114835031 GAAACTCTCCAGGACCGAG 60 114783558 114783576 TTTCTCAGGCACAGACTCC 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546 3 1 5 81 6 115155621 115155642 GAAGAAATGATAGGAGGCAAGC 60 115144834 115155579 TCTGGTGGAACCCAAAGTG 60 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 2 1 5 80 6 115018649 115018674 CTAAGAATACAGAGTCTGAAGGAG 58 115001662 115001680 CATCCTCCTTAAGTGCTCC 57 Novel Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 3 1 1 60 4 101645785 101645805 AGTTCCTGTTTCTGCTAATGC 59 101646208 101646226 TGGGTCATCACAACATCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 1 1 1 60 5 107288851 107288869 GAAGCTGAAAGAAGCCACC 59 107288805 107288823 AAAGAGGTCGAGGATCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 3 2 4 88 5 171667127 171668413 CTAAGAACCAGGCATACGC 58 171667057 171667075 CAACCAAGCATCCAGTGAG 59 Novel Rattus norvegicus 81 AABR07059778.1 ENSRNOG00000061072 ENSRNOT00000086248 1 1 1 88 4 34962368 34962386 TAAACAGGTGAAAGCCAGG 58 34962438 34962460 GCATTCGGTCTTCTAGAGG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000058612 ENSRNOT00000087422 2 1 1 61 1 16969943 16969961 ATGCTAGCTTTGGCAACAC 59 16969986 16970004 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847 1 1 2 80 16 31274706 31274727 CTACATTTCATAGAGAAGGCCC 58 31273649 31274408 TATGGTCTGGGTGATGAGTG 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 1 3 4 86 9 88336277 88341889 CCATACAATATGAATATGGGAGCAG 60 88336215 88336233 TTTCAGGGAAACACTGGCA 60 Novel Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 3 1 1 61 4 183941458 183941476 CCAGAAGGATCCTGGAGAG 59 183941503 183941521 ATACTGCTTCAGACTCGCA 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000075256 2 1 2 120 2 208383457 208383476 ACTGACAACAGAGAAGACCG 60 208385092 208392606 GAATGGACATTTCACCGGG 59 Novel Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 3 1 3 120 X 73496700 73496719 CAGTATTGAAGCAGAGCGTC 59 73501469 73501487 AATTCTTCAGGGTCCCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 1 1 1 63 3 79151577 79151595 TATTCAAGCTTGCCTGCAC 59 79151530 79151548 ATTAGACCACTGTTGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051845 ENSRNOT00000078076 3 1 1 60 19 10729498 10729516 GCTACTAGACCCTCCAGAC 58 10729540 10729558 CAAGGCTCTATGTCCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000068577 3 1 2 137 10 11879765 11880326 AAACACAGCTTCCAGTTCC 58 11880427 11880445 GTTCTCTTGCACAAGGGAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052258 ENSRNOT00000082069 2 1 1 60 13 31370610 31370632 GGAACGATACAGAGAAGATTAGC 59 31370652 31370670 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 3 2 2 84 6 139784132 139911804 TTTGAAAGGTGTCCAGTGTG 59 139784067 139784085 ACAGGAGAGTTTCAGGGAC 59 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 1 3 3 81 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016327 74016345 GATTCTTTGGCCATGTGGA 58 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 3 2 3 81 X 74012058 74014924 GAAGACTGCTGGATACAGC 58 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 3 1 1 68 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138164 120138182 AAAGCTTCCTCTCCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 2 2 2 80 20 4543429 4543602 CCTGTAAAGACCATGAGACAG 58 4543369 4543387 TCATTCTGTTCCCGTTCAG 58 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000065044 1 1 2 113 20 4559407 4560662 CTGCAAACCTGTTCGATGTC 60 4559313 4559331 AAACCATGCTCACACTCGA 60 Novel Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 3 2 2 80 14 32869829 32869848 TTCTCAGGTTCATCCAAACG 58 32856121 32869788 GAGTATAAGAAGGCTCTGTCC 57 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 2 1 1 61 4 121701581 121701601 GTGCTCTTTACACAATCACTC 57 121703149 121703167 TCTCATGAAGTGCCTTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 1 1 1 60 1 24073417 24073436 CTAGGCAGACTCAGAGACAG 59 24072674 24072692 GTCCTCCAGATGTCAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 3 1 1 60 5 111966002 111966022 TTACGAAGTACTGAGGATGGT 58 111978190 111978208 CTCACAAGTTGTCTCAGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 1 1 1 60 4 162999617 162999637 TTCCTTCTCATTCGGAAATGG 58 162999656 162999677 GTACAGCTGTTCTTTCAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085220 2 1 3 198 20 56198351 56198371 GGTTGGTCTGTTCTGATATGC 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000082897 3 1 3 168 20 56198166 56198184 TTCCTGTTCTTGGACCTGG 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776 3 1 2 121 5 132691745 132700512 GAATCCAGGCATAAATGTTGTG 58 132706070 132706088 TGGAACTTGGGTCATTCCT 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 1 2 3 80 1 47513321 47513705 GTCCACGTTCAGAAGAAGG 58 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 1 1 1 60 5 143851549 143851569 ACATGATCTTGGAGACAAACC 58 143852407 143852428 GAGTCTTCTCTTCTTTACTGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 3 1 1 60 18 50133428 50133448 CTTGTATCCAGAGTCACTCAG 58 50093993 50094013 GATCTGTCAAAGAAGTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 2 1 1 83 1 56541415 56541433 GATAGAAAGCAGATGCGCT 58 56539436 56539457 GAGGAGTAGGAATTTAAAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 2 1 1 60 18 71990613 71990631 ACCTGCAGGATCCATTCTC 59 72001723 72001741 GCAATTCAGGAGCTTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 2 1 1 109 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14434670 14434688 ACCAGGTCTTAGCAGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 2 1 1 63 3 17198653 17198674 CAATAGAAATCCTTGCATCCAC 58 17208078 17208099 ATTTCTCCTTTCTTCCTACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 3 1 1 70 13 24520513 24520531 AATTCACCACCATCTCCAG 57 24516755 24516775 GAGGATTCCATTCATCTTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000091301 1 1 2 83 6 128999057 129000092 GCTGGAAGACTGTGTTCTC 58 128998992 128999011 TGGTAATGGATGACATGCTG 58 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 1 1 2 80 1 131385502 131385760 CAAATGATAGGAGGGAGATGGA 59 131385443 131385464 GACTGTAGAAAGACATCTTCCC 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000085147 2 1 3 85 12 3223496 3223514 TGAGGTGTAGGCTTGACAG 59 3223562 3224153 GCTGAAGCCCTTTAAGACAG 59 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 3 1 2 117 12 3807978 3808636 TTACTCCTCATGCAGATGC 57 3808717 3808735 AGATACAGAGTCCCAGCTC 58 Novel Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 3 1 1 62 13 107491206 107491224 CACAGACGAGTGTATGCTG 58 107501025 107501043 TACACAAACCGTCACACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 3 1 1 61 12 6602693 6602711 CCTCTATGGCGATGACCAG 60 6592705 6592726 GTAGTTCACCTACAGATGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 3 1 1 65 12 9332070 9332088 CTCACGAGACAGGATACCC 59 9332591 9332609 ATTGTCTTAATGCCGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 3 1 1 72 9 4621515 4621534 CAGATCCTCAGTAAACCCAC 58 4622742 4622760 TCTGGGCCACAGTAAAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 2 1 1 64 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20525024 20525043 ACCTCACATGTGAAGGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 2 1 1 61 16 29993385 29993405 TCTGGGATGCTTTCAATACTG 58 29983977 29983997 ACTTAACTCCTTTCTCCAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 2 1 1 70 12 22601938 22601956 GTTCTGCCAATCCATCAGG 59 22604851 22604869 CTCCTGGCTTCTTGAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 2 1 1 60 3 149259498 149259518 CAGTGAGTTTCTTCTAAAGCC 57 149258201 149258221 CTAGGTAACTCTTGAGTGTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 1 1 1 83 12 36812690 36812708 TTACTGGGCTGATGGATGG 59 36813653 36813672 GGTACAGGATAGAACGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000079434 2 1 2 80 1 200369744 200369765 CTATGACCTAACCAACTCAGTG 58 200369806 200369928 CGATCATCAACCTTCTGCC 59 Novel Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000079434 3 1 2 80 1 200369745 200369765 TATGACCTAACCAACTCAGTG 57 200369807 200369929 TCGATCATCAACCTTCTGC 58 Novel Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 3 1 1 129 19 8404466 8404487 TTTGATAAGAAAGAGCTGAGGG 58 8368527 8368546 TGATTCTTGTGGAGATGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000080819 1 1 2 93 17 19056923 19056941 TTCATTGTCAACCGGAGCT 60 19056997 19057260 TCTTTGTGACTGAGTTTGGC 59 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 3 2 2 91 17 21293251 21294175 AAGAACAATACACCACTTGGG 59 21293180 21293200 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 3 1 1 81 7 62236167 62236185 TCTTCCTTCCTCATGGACG 59 62236993 62237011 TCTTCAGTCTTGAGCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 1 1 1 75 7 69338568 69338586 GTTCAGAAAGTGCAGGTGG 59 69339893 69339913 CTTGCAAACAACTCTTCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 2 2 3 80 10 15260 15278 AAGCTGAAACCAGAAACCG 59 13173 15219 CAAACTTCTCCTTCACAGACTC 59 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 3 1 1 62 10 1581169 1581187 GGCTACATCCAGATGACAC 58 1582477 1582499 GATCCACAGAAAGAATCCTAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 1 1 1 60 X 129482637 129482656 CATGAACGGAAGTCTGATGG 59 129481106 129481126 CCATATCACAACAAACAGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 2 1 1 61 X 155797945 155797963 AGTACTTTGACCAAGCCAG 57 155796430 155796449 TTCTGTGGACTCTTCATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 2 1 2 142 4 105108 105126 GCCACTAAAGCACAATGCA 60 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 2 1 1 60 2 32310181 32310201 TTAGGTCTCACCATCTGTAGC 59 32310419 32310438 AGTTCTGTTCTTCTGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 1 1 1 69 17 72120206 72120225 TGCAGTAAATACGCAAACAC 57 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 3 1 1 61 8 89236957 89236976 TCCACATTCACCAGGATCTC 59 89235851 89235872 GTTATTCTCATCTGACTGTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 3 1 1 60 4 59202823 59202844 CAAGGCAAACTTTACTACTGCT 59 59196387 59196405 TCTAGCACGTTGCTCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 3 1 1 65 20 48815845 48815863 ACAATGAAGACCACCACAG 58 48814469 48814490 CATGTCCTTGCTTGTTTATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 3 1 1 60 8 121730405 121730426 ACGTACACATTCAAATCACCAC 60 121726287 121726305 CAAACTTCTGGATGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 2 1 1 63 2 69809757 69809778 ACCCAAATCTTCACTGAAACAG 59 69803549 69803567 TTTCTGTGCCTTCATCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 1 1 1 78 2 149090437 149090456 AGTTCTGCAGTTTGGATGTC 59 149096543 149096562 CCAAATGACAGTGTCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 2 1 1 72 2 184917327 184917345 TTCCTGTGGTCAGATGGTG 59 184916940 184916958 ACAGGAAGTAGCTGTCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 2 1 1 101 14 24842981 24843000 AGTAGTACTACATGTGCCCA 58 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 2 2 2 93 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040926 204040944 GCTTCATCCAATGCAGAGG 59 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 2 1 1 76 2 255466054 255466072 AAAGGTCTACAGCTCTTGC 58 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-atp6 ENSRNOG00000031979 ENSRNOT00000046108 3 1 1 60 MT 8398 8417 AACAGCAAACATTACAGCAG 57 8439 8458 TACTAGAGTAGCTCCTCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd6 ENSRNOG00000029042 ENSRNOT00000051268 2 1 1 60 MT 13842 13866 GTATTTGGGTATACAACTGCTATGG 60 13806 13826 AATTAGACCCTCAAGTCTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Impa1 ENSRNOG00000010482 ENSRNOT00000014274 1 1 1 80 2 93683732 93685265 CAGCAGGAAGACATTACCA 57 93685309 93685327 GAGAACAATCCGCAAAGTC 57 NA Rattus norvegicus 81 Elovl7 ENSRNOG00000010450 ENSRNOT00000014074 1 1 1 80 2 40373697 40377442 CTCTTTGCAGCTTGTCCAG 59 40373635 40373656 TACTGGTAATTGCAGTCTTCCA 60 NA Rattus norvegicus 81 AABR07012317.1 ENSRNOG00000049173 ENSRNOT00000072995 3 1 1 85 2 193063292 193063310 CCCTCCTAAGTGTCAAACC 58 193063225 193063243 TACAGCAGGAAGACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kprp ENSRNOG00000028865 ENSRNOT00000042142 2 1 1 60 2 193133147 193133166 GAGATCCCATTCATTGTCCC 58 193133106 193133125 TCTTGGCTGTAAGGAACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 2 2 2 81 2 41592184 41684263 GCTGTACAAGATTGGTCAACTC 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 1 1 1 80 2 93982956 93985222 TACATGAAGGAACTAGGAGTAGG 59 93982898 93982916 GTCGAGGGTAATGATGCAG 58 NA Rattus norvegicus 81 Crct1 ENSRNOG00000009574 ENSRNOT00000012684 3 1 1 69 2 193330655 193330673 TTCCAAAGGGTCTTCCCAG 59 193330604 193330622 AGATGAGGAGGACGTAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk4 ENSRNOG00000019789 ENSRNOT00000026819 3 1 1 100 15 34329104 34329122 CAAGCAGAAGGTCATGGTG 59 34329181 34329539 CTTTCATTACCTGTATCTCACGTG 60 NA Rattus norvegicus 81 Ifi44l ENSRNOG00000049994 ENSRNOT00000073547 1 1 1 80 2 256976555 256977766 GTAGTAGACTGCGGTGTAGG 59 256977806 256977827 TACAAGATTGTTGTCGAGAACC 59 NA Rattus norvegicus 81 Hist2h2ac ENSRNOG00000030736 ENSRNOT00000051917 1 1 1 61 2 198360438 198360456 AAGAAGACCCGCATCATCC 60 198360395 198360413 TTGAGTTCTTCGTCGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmbl3 ENSRNOG00000046301 ENSRNOT00000045209 2 1 1 82 15 36112996 36113154 CTATTAAAGCTGAAGAGTAAGGCC 59 36112937 36112956 GGCTTCACTTTGAAGTTGCT 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 1 2 2 80 5 171633606 171633624 CATGACGCAGACAGAACAC 59 171631329 171633565 AGGGATTCAAAGAACTTCTGAC 58 NA Rattus norvegicus 81 Slc35g2 ENSRNOG00000015370 ENSRNOT00000020610 1 1 1 119 8 108880764 108880782 CTGGAGGACTGGAACAGAG 59 108855495 108855514 TCACCATGACTGTATTGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tbcel ENSRNOG00000032364 ENSRNOT00000059951 3 1 1 80 8 46722113 46723470 GTTGCCAGATTTGGAGGAG 59 46722051 46722069 AGGGAATGACAGCAAACAG 58 NA Rattus norvegicus 81 Olr1126 ENSRNOG00000030845 ENSRNOT00000044295 2 1 1 60 8 18910805 18910824 ACCAAACAATTCCCTCTGAC 58 18910764 18910782 GGCTGTAATTCAGGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic1 ENSRNOG00000014644 ENSRNOT00000019860 2 1 1 60 8 98735684 98735703 ATGTGCGATAAGTCCTACAC 58 98734947 98735661 ACTCATGGACCTTCATGTG 57 NA DesignRelaxed Rattus norvegicus 81 Ppcs ENSRNOG00000008572 ENSRNOT00000011392 1 1 1 80 5 138469056 138469239 CTCAATCCATTAGGCTCTTCTG 59 138468997 138469015 AGGCATTTCAGAGACAGGA 58 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000011742 3 1 2 82 15 37408544 37409597 TGGCTGTTATTGAAAGGTGAC 59 37408482 37408500 AGTCAGCAGTGTTAGTGGT 59 NA InUTR Rattus norvegicus 81 Gnb1 ENSRNOG00000016638 ENSRNOT00000041789 1 1 1 80 5 172962893 172965545 CCACAAACAAGGTTCATGC 58 172965587 172965607 CCACATAATTCCCAGAAGGAG 58 NA Rattus norvegicus 81 LOC100365810 ENSRNOG00000045885 ENSRNOT00000073068 3 1 1 60 8 105088060 105088078 TCTGGACTTTGGCAGTCTC 59 105088018 105088038 GAAATTCATCCCAACCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk1b ENSRNOG00000032856 ENSRNOT00000052200 3 1 1 60 11 87239965 87239983 CAAGGACCTCATCTACCGA 58 87239923 87239941 CTCATCAATGTGCAGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd55 ENSRNOG00000013555 ENSRNOT00000018438 3 1 1 80 2 44096659 44127699 TTTGATCAGCACAAAGGTGAC 60 44127739 44127759 GTTGACATCTCCATTCGATGC 60 NA Rattus norvegicus 81 Scara3 ENSRNOG00000016177 ENSRNOT00000022020 2 1 1 85 15 42616903 42618118 AATCTTCAAGGACTGGACCC 60 42616837 42616855 AGCTTCCTGATCTCTTGCC 60 NA Rattus norvegicus 81 Htr1b ENSRNOG00000013042 ENSRNOT00000017411 3 1 1 60 8 89130084 89130102 ACAGACACCCAACAAGACC 60 89130042 89130063 TGGAGAGTCTGTTATCAACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3i-ps1 ENSRNOG00000055760 ENSRNOT00000081452 3 1 1 145 2 145937427 145937451 GAACATCATACTTTCCGAACAG 58 145937556 145937575 AAGAACCTGTCCTCAAACTG 58 NA Rattus norvegicus 81 Nme6 ENSRNOG00000020721 ENSRNOT00000028125 2 1 1 81 8 117923727 117923746 CCTCAGACTCTCCAACTCAC 60 117923790 117925335 GTTGATGAACAGCCTCCAG 59 NA Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000064635 1 1 2 134 15 38097014 38097032 CTAAGGGAACCTCTCCGTG 59 38097321 38097339 CTTGGAAAGACACAGTCCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000086854 1 1 2 90 15 38096052 38096070 ATACGTACCTCTCGCAGGA 60 38096507 38096525 CTCTCACTCTAACGGGCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC680520 ENSRNOG00000027997 ENSRNOT00000033716 2 1 1 80 11 44072699 44074142 CCAACGTTAGAGAAGGTTGAC 59 44074184 44074202 TGTTCGTTCCATCTCCTGG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 80 2 216509442 216509461 GTCCTGTCAGATAAGGGACG 60 216505056 216507947 TGTCAATGCCTTTATAGCTGC 59 NA Rattus norvegicus 81 LOC100912529 ENSRNOG00000049347 ENSRNOT00000075742 2 1 1 60 5 137564992 137565013 TCGCTATATGTTATCCACTCCA 59 137565031 137565052 AGGGCTATGCATAAAGTTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687401 ENSRNOG00000029050 ENSRNOT00000061413 2 1 1 98 5 24725893 24725911 ATTGCTCTCCACAAGATGC 58 24725971 24727109 GGACTCAAAGTTGTTCCTGTC 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464,ENSRNOT00000091513 2 3 3 80 16 2125579 2125599 GCACTTTCCAACTTAGATGTC 57 2124968 2125538 ACTTCTCTAGTTCACCTTGC 57 NA Rattus norvegicus 81 Pear1 ENSRNOG00000014243 ENSRNOT00000019502 2 1 1 80 2 187116896 187116916 AGTCACTACTATTCCAACCCT 58 187116753 187116854 GCCTGGAATCTTGTTAGGG 58 NA Rattus norvegicus 81 RGD1561841 ENSRNOG00000029493 ENSRNOT00000042248 3 1 1 60 2 138489681 138489699 AACTTTCGTGCCTGTTACC 58 138489720 138489741 TTAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7c-1 ENSRNOG00000035500 ENSRNOT00000053623 1 1 1 60 11 16052886 16052907 GTTGAGGTAGTAGGTTGTATGG 58 16052925 16052946 AGAAGGTTGTACAGTTAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1239 ENSRNOG00000049421 ENSRNOT00000071100 3 1 1 60 8 42301495 42301515 GGTGACTGAATTCATTCTCGT 59 42301532 42301555 GAACAAAGGTATTTGGAGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 2 2 2 80 2 57237363 57239212 CACTAGGAAATCCAAATACCACTG 60 57239251 57239269 GCTGGGTGTTTCCATTCTC 59 NA Rattus norvegicus 81 Tmem30c ENSRNOG00000001644 ENSRNOT00000002241 3 1 1 82 11 45347038 45352633 CATTTGCAGGAAGTTCAAAGC 59 45352677 45352695 GAAGCCATTGTTTCCTGGG 59 NA Rattus norvegicus 81 Polr3g ENSRNOG00000016260 ENSRNOT00000021804 1 1 1 80 2 9566007 9566026 ATCGAAGCTGTTGGATTCAG 58 9560953 9565966 ATCTGTATCAGGAAATAGCGG 58 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 2 2 2 80 X 31167574 31167595 GAGTAAGAATGAGATCCAGGAG 58 31167632 31171999 CTATACTTGAAAGGATCTGTCCC 58 NA Rattus norvegicus 81 Mir3075 ENSRNOG00000046554 ENSRNOT00000074012 1 1 1 60 16 1822815 1822833 CTCTGCGGTTTGTACTGTC 59 1822856 1822875 AAGGACAGAAGACAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074,ENSRNOT00000090588 3 2 2 80 8 62931461 62931479 GTGCTATCTTGGGTTCACG 59 62931521 62933126 GTAGTGCTTGTAGATCTTGGG 58 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 3 2 2 84 2 30181800 30181823 GCCTAAGATAACTGTCATAATCGG 59 30181373 30181763 GAGAAATCTTGGACTATATGCTCTG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 1 2 2 80 5 136074937 136074957 TCTTCGATTCTCCAGATCACC 59 136074064 136074895 TGCCAGGATCCCAATAGTC 59 NA Rattus norvegicus 81 Pabpc4l ENSRNOG00000029749 ENSRNOT00000017012 3 1 1 65 2 130658110 130658129 GTAAACAGTGTTAGCCAGCG 60 130657531 130658082 ATGTGTCTTCCAGGTTCCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 1 1 1 60 1 170864584 170864602 AAGAAAGCCCTTGTCACCT 59 170864626 170864644 AACCACCATACCACATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209,ENSRNOT00000080681 3 2 2 80 11 38383315 38385763 AGGAAGCTCAGACTCTACAG 58 38383254 38383273 TTAGTTCATGAGCCCTTGGA 59 NA Rattus norvegicus 81 Nlrp4f ENSRNOG00000015527 ENSRNOT00000041128 3 1 1 83 1 74169869 74169887 TCTCCCATAGTGATGTGGT 57 74168331 74169822 AACAGTTGGCTAACTCGAG 58 NA Rattus norvegicus 81 Tulp1 ENSRNOG00000000507 ENSRNOT00000066897 1 1 1 80 20 7937925 7937944 AAGGGACAAGAAGGGAATGG 60 7937721 7937884 AAGAGGAACACCTTCTTCTCG 60 NA Rattus norvegicus 81 Piga ENSRNOG00000003554 ENSRNOT00000044103 1 1 1 80 X 31798978 31798998 TAACATGTATCGCTCGGAGAG 60 31798189 31798937 GTGTGGACTTGAATCTTGGC 60 NA InUTR Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000035531 3 1 2 83 1 201979748 201981132 TGTCAGGAGACTTCTTGTGG 59 201979684 201979703 TTACTCTGGAGACACCACAG 59 NA InUTR Rattus norvegicus 81 Ripk3 ENSRNOG00000020465 ENSRNOT00000027759 3 1 1 80 15 34474040 34474286 TGTCAAGTTATGGCTCAATGG 59 34473980 34473998 TTGCCCACAAATCCTAGGT 59 NA Rattus norvegicus 81 Impg2 ENSRNOG00000001622 ENSRNOT00000044900 3 1 1 80 11 46644977 46646911 TCTCCAGCTTATCAATGTGAG 58 46644917 46644936 TGAAGACTTGAACTTTGGGT 57 NA Rattus norvegicus 81 LOC503435 ENSRNOG00000024350 ENSRNOT00000031235 2 1 1 60 X 23414524 23414542 CTGCATCTACCACCATGAC 58 23414563 23414584 ATGGTAGCTGTATTGGTAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 1 1 1 63 2 39316727 39317552 ATCACTACTCTAACATAAGCCC 57 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 1 1 1 60 8 43872985 43873003 GGCTTTGGATGGGAAAGTG 59 43873025 43873045 GTGGAAGCAATAAAGTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 2 1 1 60 8 43872988 43873008 TTTGGATGGGAAAGTGATCTC 58 43873027 43873048 GAAGTGGAAGCAATAAAGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 2 2 2 80 17 6799339 6799358 CTGAAATGTTTGAAGCCGAC 58 6799398 6802163 TTTCATAATCCTGTCTGTGCTC 59 NA Rattus norvegicus 81 Id4 ENSRNOG00000016099 ENSRNOT00000021550 1 1 1 268 17 16694812 16694830 CTACATCCTGGACCTGCAG 60 16693618 16693636 TAATTTCTGCTCTGGCCCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iqgap1 ENSRNOG00000012002 ENSRNOT00000018021 2 1 1 80 1 142551911 142552653 TGCATTCAGTCACAGTGGA 59 142551849 142551868 GTCTTTATGGGAGTGCAGGT 60 NA Rattus norvegicus 81 Spata13 ENSRNOG00000013707 ENSRNOT00000018407 3 1 1 80 15 41055531 41055551 CAGAAGATCTGCAAATACCCG 59 41055590 41056673 TATATTGTTGTAGTCGCTGTGC 59 NA Rattus norvegicus 81 Epor ENSRNOG00000012619 ENSRNOT00000017369 1 1 1 85 8 22972745 22973123 TCTTACCAGCTCGAAGGTG 59 22972678 22972696 GAACACCAGAAACGCATGG 60 NA Rattus norvegicus 81 AABR07013776.1 ENSRNOG00000048082 ENSRNOT00000072487 2 1 1 60 2 256154248 256154266 GTGATGACAACCCTTGGAG 58 256154206 256154227 CTTCTCTGATCATTCCATCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911107 ENSRNOG00000048576 ENSRNOT00000074842 1 1 1 80 17 32076046 32076065 CTCCGCTACTCTAGCTATGG 59 32073234 32076004 TTGCTCAAATGAGATGCCTG 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567,ENSRNOT00000087709 2 3 3 80 15 43021141 43022137 GAAGGAAGTACCAGGAAGC 58 43022179 43022199 TAGCTTTCTGGATTACCTCAC 57 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 1 2 2 92 X 31130158 31130176 GCAAACTCTTGGAAGGCTC 59 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 2 2 2 85 1 89099529 89099629 GATGAATGGGAAGTACGTGG 59 89099463 89099481 TCTTACGGACCACATCCAG 59 NA Rattus norvegicus 81 AABR07013931.2 ENSRNOG00000053997 ENSRNOT00000082326 1 1 1 60 2 264180148 264180166 GCAATGGACATCCAAGCAC 60 264180187 264180208 TGTTCTTCTCTGGTCTCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcrl1 ENSRNOG00000034230 ENSRNOT00000052347 2 1 1 80 2 186723640 186723662 TCCTCTTCTTTCCTTCCAGC 60 186723700 186723723 GTGTCTTCATAGTCCACATAAACG 60 NA Rattus norvegicus 81 Fcrl1 ENSRNOG00000034230 ENSRNOT00000052347 3 1 1 81 2 186715832 186715852 CAATATTACTGTGCAGCTGAC 58 186715895 186716082 GAGACACTGGAACTCTGAC 57 NA Rattus norvegicus 81 Lmbrd2 ENSRNOG00000054751 ENSRNOT00000077646 3 1 1 80 2 58544391 58544409 TCCAGATGGAATCATGCCA 59 58544450 58555298 ATGAAAGGTAACAGAATCCACG 59 NA Rattus norvegicus 81 Cadps ENSRNOG00000008570 ENSRNOT00000012153 1 1 1 80 15 15641557 15642577 TCCGTACAGACTATAACTTGTG 58 15642617 15642636 CGTATCTAACAACGAGTGGG 58 NA Rattus norvegicus 81 Paip2b ENSRNOG00000014092 ENSRNOT00000019399 1 1 1 80 4 115488923 115492859 GATTTCAACAGACAGGTGGAG 59 115488863 115488882 CTCTTCATCCAGCATCTCCT 59 NA Rattus norvegicus 81 LOC100911849 ENSRNOG00000045969 ENSRNOT00000072508 3 1 1 60 8 17964725 17964745 TCTTGAGAATGCCATCTTCTG 58 17964685 17964705 AGATGTGATGCACAAGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000023732 3 1 2 85 1 99135008 99135029 TGTAGAAGGATTAATTCGGCAC 59 98959404 99134966 GGCTATCAATATCCCATGAAGAG 59 NA Rattus norvegicus 81 Rhod ENSRNOG00000019220 ENSRNOT00000026092 1 1 1 86 1 219674980 219674998 GTTTGAGCGCTATAACGCC 60 219674274 219674930 TCATAGTCATCTTGCCCGG 59 NA Rattus norvegicus 81 Umod ENSRNOG00000015557 ENSRNOT00000021027 2 1 1 80 1 189194744 189194765 AACTTTGAATGCTCTTACCCTC 59 189192885 189194704 GATGTTCAAGGCACTAACCA 58 NA Rattus norvegicus 81 Tmem190 ENSRNOG00000042528 ENSRNOT00000066383 2 1 1 82 1 72631083 72631794 TTCTACCCATGGAGTTGTGAG 60 72631021 72631039 CAGAGGTTGGGATTCTCGA 59 NA Rattus norvegicus 81 Btbd1 ENSRNOG00000019529 ENSRNOT00000026595 3 1 1 80 1 143620616 143620636 GCTGTATCAATAGGTTCCAGC 59 143615019 143620576 TGTTAACTGTGAACCTGATCC 58 NA Rattus norvegicus 81 Oosp2 ENSRNOG00000036624 ENSRNOT00000042091 1 1 1 80 1 227998715 228010781 TGTTGTTCATCTCGGAAGTC 58 227998654 227998673 CATAAAGTGACTCTCGGGTG 58 NA Rattus norvegicus 81 Tada2b ENSRNOG00000027326 ENSRNOT00000037061 2 1 1 274 14 79446083 79446101 GAAGTACTGCGTGTACTGC 59 79454046 79454064 CAACATGAGCAGCCATGTC 60 NA DesignNoJunction Rattus norvegicus 81 Ubl7 ENSRNOG00000007442 ENSRNOT00000010083 3 1 1 80 8 62699745 62699764 TCTATGGTATTCAGCCTGGA 58 62699807 62703796 CCACTGGTTCAGGTTTCTG 58 NA Rattus norvegicus 81 Bnip3l ENSRNOG00000009820 ENSRNOT00000014798 1 1 1 80 15 43652583 43652601 CTTCACCACAAGAAGACGG 59 43648170 43652540 CTTCTTCTGACTGAGAGCTG 58 NA Rattus norvegicus 81 Kdelc1 ENSRNOG00000011740 ENSRNOT00000016285 3 1 1 81 9 50878144 50878162 TCCAGGGATATCGTGATGC 59 50877961 50878103 ACATCATATCCAGACTTACTCGG 60 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152,ENSRNOT00000048417 2 2 2 80 11 46184985 46185004 ATGATGCAGCGAGTATTCAG 58 46185046 46191190 AAGATCTCCATCCTCATCCT 57 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849,ENSRNOT00000084023 2 2 2 80 2 196037711 196037843 ATGTCTTACTCGAGGCTTGG 60 196037885 196037904 GAGAGGAGGTGGAAGATACG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 3 7 7 84 11 46324401 46324419 TGATCAGGTCCACTCAGTG 59 46306473 46313974 GGTAACATTCTGAATCACTTGC 58 NA Rattus norvegicus 81 Nos3 ENSRNOG00000009348 ENSRNOT00000013058 3 1 1 80 4 7335884 7336699 GATACAACATACTTGAGGATGTGG 59 7335827 7335845 CTGCCTTGTCTTTCCACAG 59 NA Rattus norvegicus 81 Zfp282 ENSRNOG00000026981 ENSRNOT00000037248 1 1 1 89 4 77567756 77569393 AGAATCCATCACTGACTCCC 59 77569445 77569463 TCCTGCTGATCCCATACAC 59 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 3 2 2 83 1 101456401 101456419 CATCCACCAAGAAGCTGAG 58 101455556 101456354 CAGCAATCATCCTCTGCAG 59 NA Rattus norvegicus 81 Vps52 ENSRNOG00000000470 ENSRNOT00000000549 2 1 1 80 20 5440186 5440769 AGTGGATGTTCACATCCAGG 60 5439983 5440002 TAGTGTCGAAGATCCACACC 59 NA Rattus norvegicus 81 Epha6 ENSRNOG00000029184 ENSRNOT00000047310 2 1 1 80 11 42476113 42476131 ATATCCGAGTGAGGACTGC 59 42476174 42514156 TGTCAGAAGTTTCGTCTCCT 59 NA Rattus norvegicus 81 Vom1r100 ENSRNOG00000055950 ENSRNOT00000085924 3 1 1 82 4 122006888 122006906 CCAGTCACTATGACATGCC 58 122006952 122008180 TATGAGAACAGTGGCTGCT 59 NA InUTR Rattus norvegicus 81 Vav1 ENSRNOG00000050430 ENSRNOT00000073294 2 1 1 80 9 9637605 9638315 CCAAGACAGACAGGTATGC 58 9637543 9637562 CCTTGAGGTCATAAGAGTCC 57 NA Rattus norvegicus 81 Taar6 ENSRNOG00000016089 ENSRNOT00000021529 1 1 1 60 1 22536350 22536371 TCTTGGTGATGATATCCATCCT 59 22536392 22536410 ATGAGGAAGTTGGTGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tapbp ENSRNOG00000029500 ENSRNOT00000044975 1 1 1 122 20 5471197 5475187 CATGGCAACAGTGGTACTG 59 5471093 5471111 GAGGGAGCATCTTCCAGAG 59 NA Rattus norvegicus 81 Itln1 ENSRNOG00000004678 ENSRNOT00000006196 1 1 1 80 13 89923038 89923625 GCCTCTACCAGAAGTACCC 59 89923669 89923687 CATAGACCACAGGTAACGC 58 NA Rattus norvegicus 81 Olr736 ENSRNOG00000052729 ENSRNOT00000080981 1 1 1 60 3 79017729 79017750 ATTGTTCTTTGGTCCATGTGTC 60 79017690 79017709 GTCTACAGGCAGGGTATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk1c2 ENSRNOG00000029237 ENSRNOT00000025701 1 1 1 80 1 99981726 99981843 CCCTCTGAGATGGTAGTAAGTC 59 99981667 99981687 GTAGGTTTCGATGCACTTCTC 59 NA Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 2 2 2 80 4 34255978 34255998 CTGATGGAGAGTTATGTGGAC 58 34256038 34259242 AACATCTAAAGGTGAACCCTG 58 NA Rattus norvegicus 81 Gdpd5 ENSRNOG00000036859 ENSRNOT00000055321 3 1 1 80 1 164416030 164417123 TCTTCTCAGAGATCAGTGATGG 59 164417163 164417182 TGGCATAGGTGTCGTAACTG 60 NA Rattus norvegicus 81 Tmem120a ENSRNOG00000001441 ENSRNOT00000001960 2 1 1 80 12 23989983 23991677 CCAAGGTATCCAGGAAACAC 58 23991718 23991738 GAGTTTGTACAGTTGTCCTGG 59 NA Rattus norvegicus 81 Cldnd1 ENSRNOG00000001657 ENSRNOT00000002260 1 1 1 80 11 43990898 43990916 ACTTGGGATTGTGGAGACG 60 43989267 43990856 CAAATGACTCTGTCCTTTCCG 59 NA Rattus norvegicus 81 Cldnd1 ENSRNOG00000001657 ENSRNOT00000002260 2 1 1 81 11 43987911 43987929 ATTGGACTTTGTGCCTGTG 59 43987737 43987866 TACACAGACCTGCAAGGAG 59 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 3 2 3 101 5 25580000 25583505 CAGACGAATTGGAATCCCG 59 25579917 25579935 TCACAGTTACGGACGAGAG 59 NA Rattus norvegicus 81 Ttc28 ENSRNOG00000032590 ENSRNOT00000046920 3 1 1 80 12 51392377 51392395 CCATTCCAGTCTCCCTGAG 59 51391227 51392333 ATAGGTCAAACCCGAGAGC 59 NA Rattus norvegicus 81 Retnla ENSRNOG00000001955 ENSRNOT00000002676 1 1 1 80 11 54545127 54545150 GTGAATACTGATGGAACCTTAGAC 59 54544623 54545092 AGAGGGATAGTTATCTTGATGGG 59 NA Rattus norvegicus 81 Olr714 ENSRNOG00000049728 ENSRNOT00000051799 2 1 1 60 3 78361614 78361633 ATCTTCCTTTCTGTGGTCCC 60 78361573 78361593 AAGAGCGGGTATATGTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp644 ENSRNOG00000002112 ENSRNOT00000002882 1 1 1 80 14 4182267 4182287 TCCATTAAACGAAGACAGTCC 58 4182327 4197694 TGCTTACAATCTATGGCTGAG 58 NA Rattus norvegicus 81 Rergl ENSRNOG00000008130 ENSRNOT00000010728 3 1 1 80 4 173633361 173634836 ACCCATGTTCTCAATCACAG 58 173633300 173633319 CGTACACAATCACAAACCCA 59 NA Rattus norvegicus 81 Dcbld2 ENSRNOG00000055281 ENSRNOT00000084060 1 1 1 80 11 44256652 44256670 GCCAACAATGTCACTTCCA 59 44254584 44255530 TAGAGTCCCATAGCAACCAC 59 NA Rattus norvegicus 81 Ppil1 ENSRNOG00000000523 ENSRNOT00000068527 3 1 1 126 20 6863206 6864345 TACCTGGAGACTAGCATGG 58 6863098 6863116 TGATCCTGTGGAACTTGGT 59 NA Rattus norvegicus 81 Hist1h3f ENSRNOG00000028975 ENSRNOT00000040906 1 1 1 164 2 198380657 198380675 CTACCAGAAGTCGACCGAG 59 198380511 198380529 TTGGTGTCCTCGAACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pole ENSRNOG00000037449 ENSRNOT00000067453 1 1 1 80 12 52416116 52416136 ACACATCAACGAGATCAACAC 59 52415812 52416075 CGGAATAACAATGGGACCTG 59 NA Rattus norvegicus 81 AC128084.1 ENSRNOG00000056310 ENSRNOT00000040493 2 1 1 60 9 65172480 65172498 TCAAGCACTCAAAGAGCAG 58 65172522 65172540 TCCTTCTGATCGTTCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msto1 ENSRNOG00000020357 ENSRNOT00000027579 3 1 1 80 2 188214715 188214881 TACAACCATGACGGTGAGAC 60 188214654 188214672 TTCCAAGTACCTGGGTTCC 59 NA Rattus norvegicus 81 Prdm15 ENSRNOG00000001620 ENSRNOT00000046318 1 1 1 80 11 38340858 38341473 TGTTTATCTGGTGTGAAGACTG 58 38340799 38340817 AGTCCTTGACCATGACCAC 59 NA Rattus norvegicus 81 RGD1311847 ENSRNOG00000023700 ENSRNOT00000030617 1 1 1 80 16 19092037 19093267 GGAAAGGTGTTCTTGGATCTG 59 19091977 19091995 CGACTTTAAGCTGGACTGG 58 NA Rattus norvegicus 81 Cecr2 ENSRNOG00000011566 ENSRNOT00000015499 3 1 1 80 4 153274014 153284058 AAGAGACATCACGCCTCAG 60 153284101 153284120 GGCTTTCCTTCTTCAAGCTC 59 NA Rattus norvegicus 81 Tp53inp1 ENSRNOG00000007964 ENSRNOT00000010591 3 1 1 81 5 24411088 24411621 TTGACTTCATAGATACCTGCAC 58 24411663 24411681 TCTGCTGAGGACTCTTCAC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 1 2 2 80 3 110479616 110479634 AGCATGTTCCTGTCCACTC 60 110479676 110482326 AGAATTGAGCTTGTTCTGTGG 59 NA Rattus norvegicus 81 Klf2 ENSRNOG00000014205 ENSRNOT00000019052 3 1 1 61 16 19223858 19223876 CTACACCAAGAGTTCGCAC 59 19223248 19223834 GATAAGGCTTCTCACCTGTG 58 NA DesignRelaxed Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218,ENSRNOT00000067037 2 2 2 81 13 88638292 88638310 TTAACAAGACTGCTGAGGC 58 88637362 88638247 TGGACTGACCTTTCATCCT 58 NA Rattus norvegicus 81 Olr179 ENSRNOG00000048628 ENSRNOT00000039989 2 1 1 60 1 169844629 169844649 TGTATGTGATGATTCCACCTG 58 169844589 169844607 ATCTGTTTGGTTCTCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308742 ENSRNOG00000022033 ENSRNOT00000035829 3 1 1 82 3 14285301 14288634 CTATCTTAACAATTCAGGCCCA 58 14285240 14285258 ATGCTTTGACACGACTTCC 59 NA Rattus norvegicus 81 Rn60_X_0631.1 ENSRNOG00000051031 ENSRNOT00000076130 1 1 1 60 X 62457581 62457599 CTCAAAGTACCTCCTGCCA 59 62457539 62457558 GAGTTGCTGTTTGTCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja8 ENSRNOG00000046703 ENSRNOT00000071622 1 1 1 60 2 199051897 199051916 TGCCACATCATCTTCAAGAC 58 199051856 199051874 ACAGGAAGTAATGGCCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dydc1 ENSRNOG00000011165 ENSRNOT00000014862 2 1 1 81 16 18653763 18654223 GCATGGAGCAATTGAGACAG 60 18654267 18654285 TCCATCATTTCCTGCTCCA 59 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 1 2 2 80 1 83191356 83192671 ACTGAAGAATCATCAGGGAGTC 60 83192709 83192730 ACAATGGAGCAGATTATGTTGC 60 NA Rattus norvegicus 81 Rn60_5_0437.1 ENSRNOG00000033953 ENSRNOT00000047860 3 1 1 60 5 38981282 38981300 AGGTTGCTATTGACATGGG 58 38981324 38981342 TTCTCATTCTGGTCCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910120 ENSRNOG00000050642 ENSRNOT00000072645 2 1 1 60 8 42817189 42817209 GGATTAACAAAGCAGCCTGAG 60 42817229 42817249 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 3 2 2 81 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000042903 ENSRNOT00000066084 1 1 1 82 8 87210399 87212439 TGTTTCAGGAGGATAATGGGA 59 87210337 87210355 CAGAAGCATTGTGGCTCTG 59 NA Rattus norvegicus 81 Mir3589 ENSRNOG00000036269 ENSRNOT00000054392 2 1 1 61 X 143516996 143517015 CGAACTTGGTGATACTCCAG 58 143517039 143517057 ATGTTTCTGCCAGGTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 1 2 2 80 11 58834170 58834188 CCCTCAAATGTGAAGCCTC 59 58833652 58834127 CGTTTGCACTGTTTATCCTG 58 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000013114,ENSRNOT00000065555 3 2 2 60 10 84982899 84982918 CGGATCTTAAAGAGCGTTCC 59 84983676 84983695 GAATGGTGTCATCAATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr733 ENSRNOG00000056633 ENSRNOT00000087245 3 1 1 60 3 78973775 78973797 CTCCTCAATCCTCTCATCTACTC 59 78973737 78973758 GATCCTTCATGGCTTTCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017789.1 ENSRNOG00000049030 ENSRNOT00000075456 2 1 1 73 15 31097318 31097336 TTACTCCTAGGCCTTCACC 58 31097508 31097526 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 2 1 1 98 4 157057951 157057971 TTTGGAGTACATGACAAAGGG 58 157058031 157058130 GTAAAGCCTGACAGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 1 2 2 82 1 100395182 100395202 CTGATACCAATGACAGGTGTC 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Rbks ENSRNOG00000004710 ENSRNOT00000006452 1 1 1 82 6 26096558 26098866 AGAGTGAGGCTGAGATCCT 59 26098912 26098930 CCGTTCTAGGAGAACCAGC 60 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 3 1 1 85 5 140023897 140023918 CAAATCATCCTTGGGATTTCCT 59 140020272 140023852 TTCTGAATTGACCGAATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tmem178a ENSRNOG00000007907 ENSRNOT00000010927 1 1 1 80 6 3657753 3700248 CCTGAAAGGTATTGCACAGC 60 3700288 3700309 TTGAAAGGAATGTTCCGTAAGC 60 NA Rattus norvegicus 81 LOC100911241 ENSRNOG00000039251 ENSRNOT00000060114 1 1 1 82 18 35291728 35291746 TTCTCAGCAACATGAAGCC 59 35291792 35293373 GCTCACAGCATCTACAGAG 58 NA Rattus norvegicus 81 Egr4 ENSRNOG00000015719 ENSRNOT00000021097 1 1 1 127 4 117295373 117295391 AACAGACTCCTGCTTCCTG 59 117295264 117295282 ACATGAGGTTGAAGAGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syce1 ENSRNOG00000024073 ENSRNOT00000033074 2 1 1 80 1 213527197 213527215 AAAGAAAGCCAGTGAGGAG 57 213526595 213527154 TCTTCGTGTAATGAGTCCAC 57 NA Rattus norvegicus 81 LOC303448 ENSRNOG00000054719 ENSRNOT00000089255 2 1 1 128 10 78688505 78688524 ACACATACATCCACATCCAC 58 78688324 78688342 ATAGAAGTTTGCAGTGCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rln1 ENSRNOG00000060867 ENSRNOT00000088193 3 1 1 139 1 247486053 247486072 GACCAAGTCATTCAGGTGTG 59 247483824 247485951 GATGGCACAACTTCTGCAG 60 NA Rattus norvegicus 81 Spef1 ENSRNOG00000021247 ENSRNOT00000028861 3 1 1 80 3 123716870 123716890 TGGAGATGCACAATTATGTCC 59 123716300 123716828 TCAGCACCTTTCTGTTCAG 58 NA Rattus norvegicus 81 Srp19 ENSRNOG00000020204 ENSRNOT00000027418 2 1 1 81 18 27119266 27120619 CAGTTCCCATCACGTAAGTC 58 27120663 27120681 CTCCTGACTTCTGAGTCCT 58 NA Rattus norvegicus 81 Pdlim4 ENSRNOG00000050794 ENSRNOT00000074616 1 1 1 80 10 39396267 39399925 CTCTCAGTAAGCAGGCCTG 60 39396205 39396224 GTCAATGTGGATCCTATGCG 59 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000048979 ENSRNOT00000067074 1 1 1 80 7 14823826 14823846 CTTGGAGTCCAAGACTAAGTC 58 14823886 14824566 TTTCCATGTTCATCCTTAGCC 58 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000048979 ENSRNOT00000067074 3 1 1 81 7 14824609 14824817 CATGTTTGGAGGCCATGAC 59 14824862 14824880 CTCCTGGTATTCTGGGTGC 60 NA Rattus norvegicus 81 Ypel4 ENSRNOG00000060130 ENSRNOT00000083592 2 1 1 81 3 72137645 72137988 TTTAACTCCGTGGTCAACG 58 72138033 72138051 AAATGTCAGCTACCGAGTG 58 NA Rattus norvegicus 81 Mgat5 ENSRNOG00000003614 ENSRNOT00000004995 1 1 1 80 13 44144885 44146981 TCTTAAACCAGAAGATTGAGCC 59 44147021 44147040 CGATGAAAGCGTTGATTCTC 58 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 2 2 2 80 9 9724316 9724418 TCCATCACAGCCAGATTCC 60 9724461 9724480 CTTATCCTCATCCTGGACCC 59 NA Rattus norvegicus 81 Mmp2 ENSRNOG00000016695 ENSRNOT00000022679 1 1 1 80 19 15556412 15556430 CTGCAAGCAAGACATTGTC 58 15552930 15556368 CGCCAAATAAACCGATCCT 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 1 2 2 80 1 174370116 174372220 CTGTCACAATCAAGGTTACCA 58 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Ak3 ENSRNOG00000052506 ENSRNOT00000079875 1 1 1 80 1 247159491 247159509 CGGATGATGTCATGACTCG 58 247149356 247159447 TTGGAAATCCGTCCAACAG 58 NA Rattus norvegicus 81 Asna1 ENSRNOG00000003747 ENSRNOT00000067518 3 1 1 80 19 26134281 26134830 CCTTCATCTCACAGATGTGC 59 26134220 26134240 AGGTCTCTTCTAACTTGGAGG 59 NA Rattus norvegicus 81 Itk ENSRNOG00000006860 ENSRNOT00000009211 1 1 1 80 10 31447933 31452344 TGGACACAGGTAAAGAAGGA 58 31447872 31447890 CCTTGGTGAAGACAGAGAC 58 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 1 2 2 85 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273695 50277576 GTCTTCAGACCTAGGTGGC 60 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000089616 2 1 2 171 10 90349333 90349448 GCTATTTCGGAGACACAGC 59 90350652 90350671 TTCGTTGGATTTGAAGCTCG 59 NA InUTR Rattus norvegicus 81 LOC100910474 ENSRNOG00000008521 ENSRNOT00000011278 2 1 1 60 12 33182671 33182692 AAATCCGTCATATCCTAGTCAC 58 33182632 33182653 AGCATCTCTACTTCTTCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Farsa ENSRNOG00000003149 ENSRNOT00000004370 1 1 1 80 19 25976982 25977001 AGCTCCCAATGGACTATGTC 59 25977040 25977152 AGGTATACTTGTAGCCTTGTGAG 60 NA Rattus norvegicus 81 Rbbp7 ENSRNOG00000005157 ENSRNOT00000066676 2 1 1 80 X 33657237 33664534 CTTCCTGAAGTGACTAAACCA 58 33657177 33657196 CTGCTCATCAGATGTATGGG 58 NA Rattus norvegicus 81 LOC100911939 ENSRNOG00000048942 ENSRNOT00000043810 3 1 1 60 8 42285276 42285300 TTACCACTCCTACCATCTTTATCTC 60 42285318 42285336 CTGATGTGGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912610 ENSRNOG00000033415 ENSRNOT00000044186 3 1 1 115 5 77999068 77999410 ATGTGGACAAGCTCAATGG 58 77998971 77998989 TCCAAGACATCGATGTGCT 59 NA Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000075056 2 1 2 88 17 39725095 39725116 GATGAAAGACAGGATACTTCCC 58 39724815 39725049 GAGACAGTTTGATTTCATGGAC 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650,ENSRNOT00000027091 2 2 2 91 1 220244655 220244673 TTGAGCTCAAGATTGGGCA 60 220244728 220244833 CACCTCTTTCCCTGTTTGC 59 NA Rattus norvegicus 81 Cmss1 ENSRNOG00000027888 ENSRNOT00000031464 2 1 1 80 11 45328804 45330211 GACATTCCCGAGATAAGAAAGG 59 45330251 45330270 CTTCAAGGAGTCCGATTTGC 59 NA Rattus norvegicus 81 Lrrc30 ENSRNOG00000030389 ENSRNOT00000049720 3 1 1 60 9 115850333 115850352 ATCGTGGTCCTAAACTTGTG 58 115850292 115850310 GGAGACTGACTTCTTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102,ENSRNOT00000078175 3 2 2 80 4 114892469 114892713 AAGGAGAAAGAGTTTGAGGAG 57 114892754 114892773 CTTGAGCTCTGTCTTCTCTG 58 NA Rattus norvegicus 81 Gcm2 ENSRNOG00000015008 ENSRNOT00000020244 2 1 1 81 17 21495161 21495179 CGAGGACACAGTGGATACC 60 21495224 21495914 CATGAACTCCTTTGGCCTG 59 NA Rattus norvegicus 81 Pdcd1lg2 ENSRNOG00000016136 ENSRNOT00000021614 1 1 1 80 1 247607147 247607165 ACTTCAGCTGCATGTTCTG 59 247607209 247610563 TGGGTTCCATCCAACTCAG 59 NA Rattus norvegicus 81 Tmem136 ENSRNOG00000021793 ENSRNOT00000038647 3 1 1 66 8 47401205 47401223 CTTCATCGATGGTCCTTGG 58 47399763 47399781 AACGTGAACTTGGAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0251.1 ENSRNOG00000051342 ENSRNOT00000076862 2 1 1 60 15 21114213 21114232 ACTCCCTTTCAAACATGGTC 58 21114172 21114191 ATTGGTGTTGTTAGTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630,ENSRNOT00000007726 3 2 2 80 19 25152819 25152942 AACCTTACATAAAGGAGGTGAG 58 25152760 25152778 GCTGTAGCTCCATTTCCTC 58 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000072928 2 1 2 81 3 134441437 134441456 GAGTGTGAACTTCCTGAAGG 58 134441497 134441520 CAGGAAGGTCAGTATTACATGC 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000045937 ENSRNOT00000075045 1 1 1 82 X 43015835 43015853 TTCTCAGCAACATGAAGCC 59 43014208 43015789 GCTCACAGCATCTACAGAG 58 NA Rattus norvegicus 81 Cyp2ac1 ENSRNOG00000048329 ENSRNOT00000072826 2 1 1 82 9 23435081 23437489 TATATTCCAAAGGGCACTGAG 58 23435019 23435037 AAAGCATCTGGTGTTTCCC 58 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524,ENSRNOT00000074278 3 2 2 81 2 173798990 173800674 CGGCTCAATTTAATTGCAACTG 60 173798930 173798949 CACCAACTGGTTTAGACAGG 59 NA Rattus norvegicus 81 Atg9b ENSRNOG00000023449 ENSRNOT00000029724 3 1 1 80 4 7320809 7320910 TGGTCAAGTGATGGTTCCA 59 7320953 7320972 CTTTGGGAACAGATTCTGGG 59 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678,ENSRNOT00000028585 2 2 2 80 1 89384640 89384748 ATCTTCAGAAGTACGAAGTGG 58 89384580 89384603 TTCTCCATATAGTATAGGACCCTC 58 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939,ENSRNOT00000059494 3 2 2 80 17 43465923 43467093 TATAGCTCCACGGTATGCTG 59 43467136 43467154 ACAGTAGGAGCTATGCCTC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 1 2 2 80 9 53505064 53505084 CTCAACAGACCCAAGTTACTC 58 53503299 53505022 TCGTTCCCACTTCTTTAGC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 3 2 2 80 9 53475060 53475080 TTTCAGTCCATGGTCAATTCC 59 53465071 53475019 CAGGAAACAGTCCTATTCCC 58 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 1 1 1 82 16 70906044 70906165 CCAATAAACAAGAATCTCTGGTCC 60 70906206 70906224 GGGTAGAGGATGAGGAGGA 59 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000078029,ENSRNOT00000020648 1 2 2 67 17 15477420 15477444 CCAAGGAATTTGGAACATCTATACC 60 15476634 15476655 CACATCATTGTCACATTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 1 2 2 81 2 188750424 188750442 GAATGCCGATCACTCTCAC 58 188750486 188750881 TGATGGTTGGCAATGATCTG 59 NA Rattus norvegicus 81 Arid3b ENSRNOG00000019677 ENSRNOT00000068340 2 1 1 80 8 62574502 62575562 GAATCAATGGCAGGGAAGAC 59 62574441 62574461 TATTGATGCTCCCAATGTTGC 59 NA Rattus norvegicus 81 Mmp16 ENSRNOG00000005708 ENSRNOT00000050137 1 1 1 80 5 31679884 31688971 GACAGAAACACAATTGACTGG 58 31689011 31689031 GATGTTGAATTTAGAGCTGCC 58 NA Rattus norvegicus 81 Il13 ENSRNOG00000007652 ENSRNOT00000010121 2 1 1 93 10 38984084 38985330 ACCAGAAGACTTCCCTGTG 59 38983439 38983458 ATGTTGGTCAGGGATTCCAG 60 NA Rattus norvegicus 81 Hpcal4 ENSRNOG00000050983 ENSRNOT00000074347 2 1 1 80 5 140876276 140876294 GGGCCTTTGAGATGTACGA 60 140876332 140878315 TATAGATAGCCTCAATGATCTCCAG 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473,ENSRNOT00000076254 3 2 2 60 15 5808516 5808536 AGAAAGACCCAAGAAATCCTC 58 5808557 5808576 TCACAGATTCCAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab12 ENSRNOG00000026176 ENSRNOT00000041464 1 1 1 80 4 147729801 147729820 AGTACCTACAAGCAGTGGTC 59 147726813 147729764 CCTTGTAGACAAATTGTGATACTCC 60 NA Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 2 1 1 125 1 100810415 100810435 TCGTAGACTATGGGAAACTCC 59 100809058 100810328 AATCAGAGAAGCCGTCACC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100360397 ENSRNOG00000011304 ENSRNOT00000015016 2 1 1 115 1 248647924 248647942 TTCTTCCTTCACCAGCGAG 60 248648018 248649442 TTTAGTTTCATCTGGCTTCAGG 59 NA Rattus norvegicus 81 Barhl1 ENSRNOG00000013209 ENSRNOT00000017725 2 1 1 94 3 7492166 7493613 AACCGCAGGACTAAATGGA 59 7492090 7492108 GACGGGAACATTCTCTGGA 59 NA Rattus norvegicus 81 Barhl1 ENSRNOG00000013209 ENSRNOT00000017725 3 1 1 94 3 7493673 7493691 TACCTGAGTGTGCAAGACC 59 7492168 7493616 CATTTAGTCCTGCGGTTCTG 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 1 2 2 80 14 86386247 86386356 AGTCTTCTCTGTCACTTGCC 60 86386186 86386204 CTTCAGGGTTTGCACATCC 59 NA Rattus norvegicus 81 Zfp804b ENSRNOG00000031306 ENSRNOT00000045346 3 1 1 98 4 24222626 24228370 TCTGAATGTGTTTCTGGAAACG 60 24228428 24228447 TCTGCCATTCTTAACTGGGA 59 NA Rattus norvegicus 81 Ggn ENSRNOG00000023931 ENSRNOT00000056955 2 1 1 173 1 88115606 88115624 CTTAACTCCTGTCCCTGCA 59 88116454 88116472 CAAGTCGTAGTGCTCTAGG 57 NA DesignNoJunction Rattus norvegicus 81 LOC691162 ENSRNOG00000043039 ENSRNOT00000065471 2 1 1 88 5 162351304 162365283 GAGGGAAGTTCACCAAAGC 59 162365334 162365353 GTAGTCTGGTCTGTGGTCTG 60 NA Rattus norvegicus 81 Tmtc2 ENSRNOG00000004585 ENSRNOT00000006086 2 1 1 80 7 47333716 47333734 GAGAACAGCAGGTTTGCAG 60 47333125 47333673 TAAATAGGCAGAAGCCAGGG 60 NA Rattus norvegicus 81 LOC680528 ENSRNOG00000039678 ENSRNOT00000060861 1 1 1 80 11 44090884 44090902 TTCTATGCCCAAAGTGTCC 57 44090943 44091995 TATTTCAGGCCTCTGAATATCC 58 NA Rattus norvegicus 81 Imp3 ENSRNOG00000017460 ENSRNOT00000023456 3 1 1 60 8 61607036 61607056 CGGAAGCTTAAGTTCCATGAG 59 61607076 61607096 CTTCCCAGTTTAGGAAGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stmnd1 ENSRNOG00000031595 ENSRNOT00000051732 2 1 1 80 17 18828892 18828910 AGCAAACAGAGGACCAGAG 59 18817169 18828848 CTCTGACATCAGCCTTGGA 59 NA Rattus norvegicus 81 Ndufs4 ENSRNOG00000011383 ENSRNOT00000015217 2 1 1 80 2 46397248 46438817 GAGAAACTGGATGTTACTCCTC 58 46397189 46397209 AGCAGGAACAAAGATTCTGAC 59 NA Rattus norvegicus 81 Prss21 ENSRNOG00000047969 ENSRNOT00000073065 2 1 1 81 10 13216173 13216192 CTCCACATACAAGTTTGCGA 59 13216236 13219135 AAGTGGCAGACTCTCATCC 59 NA Rattus norvegicus 81 Olr1172 ENSRNOG00000052784 ENSRNOT00000086296 1 1 1 60 8 20442434 20442455 TACTGGGTGTGATTCCTATGAC 59 20442395 20442415 AAGGATGAGACAATCTGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1172 ENSRNOG00000052784 ENSRNOT00000086296 3 1 1 60 8 20442397 20442417 TACTCACAGATTGTCTCATCC 57 20442357 20442375 AGGCTTTGTACTTCCTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1128 ENSRNOG00000029054 ENSRNOT00000044686 1 1 1 60 8 18927026 18927046 ACTTATATTTGGTGGCATCCC 58 18927065 18927086 AGAGGCAATTTGGACATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acot9 ENSRNOG00000003782 ENSRNOT00000005033 2 1 1 80 X 43545823 43549964 CACAAGGAGAATTGAACAAGAG 58 43545764 43545783 TCTCCTCAGAATTAGGAGCT 57 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 3 2 2 183 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550621 98550639 ATGCATTGGATGTAGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699,ENSRNOT00000081105 1 2 2 80 17 42590201 42594010 TTATGAAGAAATCCGCAGCC 59 42590140 42590160 CCAATATACAGGTCATCCCAC 58 NA Rattus norvegicus 81 Nfkbid ENSRNOG00000025111 ENSRNOT00000029719 1 1 1 80 1 88888019 88888127 AGACTTCGAAGGCCTTACC 59 88888170 88888189 CTCGGACACATAGTAGGTGG 59 NA Rattus norvegicus 81 Tshz2 ENSRNOG00000048433 ENSRNOT00000073788 1 1 1 60 3 166744919 166744937 TCAACGAGGATGAGCAAGG 60 166744960 166744979 AGAGGTTTCTGTAAAGCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910942 ENSRNOG00000013073 ENSRNOT00000017489 2 1 1 61 18 35249147 35249165 CAGGTGTCTTTCTGCTCCT 59 35249190 35251840 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Ssb ENSRNOG00000007998 ENSRNOT00000011174 2 1 1 81 3 56099714 56100256 CCAGGAAGTACTGAAACAAGAG 59 56100298 56100316 AGGTCTGGTCATCCAAGTC 59 NA Rattus norvegicus 81 Vom1r35 ENSRNOG00000033755 ENSRNOT00000049179 3 1 1 60 1 72128915 72128936 TATCAGTTTGTCACTCTTGCTC 59 72128876 72128898 TGTCTCTTCTACTGAGTATCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cysltr2 ENSRNOG00000015042 ENSRNOT00000020186 3 1 1 60 15 54905800 54905819 CAGATGCTCCATATCACCAG 58 54905759 54905780 AGACCCATATAATCCCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018556.1 ENSRNOG00000049650 ENSRNOT00000045865 1 1 1 60 15 64939981 64940002 CTTCACCAACAGAATACAAGAG 57 64940020 64940041 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs5 ENSRNOG00000026646 ENSRNOT00000036389 2 1 1 98 5 141393947 141405369 CCAAGAAGTCATGCCTTTCC 59 141393868 141393887 GCATTCTTGTAAGGCTGCTC 60 NA InUTR Rattus norvegicus 81 Urm1 ENSRNOG00000026636 ENSRNOT00000037494 1 1 1 80 3 8393752 8402570 GAGGAACCCTGGGATATCC 59 8402614 8402632 CTGGATGAATAGCTCTGGC 58 NA Rattus norvegicus 81 RGD1562492 ENSRNOG00000037219 ENSRNOT00000051280 2 1 1 80 1 101271094 101271115 GCACCATCATAACTTTCTCCTC 59 101271257 101274681 GCAGATTGGAGACATTGCTC 59 NA Rattus norvegicus 81 Kctd11 ENSRNOG00000015669 ENSRNOT00000020970 1 1 1 60 10 56490865 56490885 CATTACTTCATCGACAGGGAC 59 56490825 56490843 CTAGCCGCAGGAAATTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S1pr4 ENSRNOG00000005370 ENSRNOT00000007117 3 1 1 60 7 11078406 11078425 TCTACTCCAAGGGCTATGTG 59 11078446 11078466 ATAGTCACTAGGATTAGGGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1744 ENSRNOG00000029420 ENSRNOT00000044570 3 1 1 60 20 1862068 1862087 CCTAAGGCCAGCTATGATCC 60 1862108 1862128 TGATCACAGCATAGAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 1 1 1 63 10 62008890 62008908 CTTGGCTTATGGTGAGCCT 60 62008845 62008863 TTTGCCACATGGAATGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 3 1 1 65 10 62008892 62008910 CACTTGGCTTATGGTGAGC 59 62008845 62008863 TTTGCCACATGGAATGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dus3l ENSRNOG00000050381 ENSRNOT00000072703 2 1 1 80 9 10289748 10289859 TTCTTTGCAGGTATGTGCC 59 10289686 10289704 GGCCTAAGTAGTAGGGTGG 59 NA Rattus norvegicus 81 Evi2b ENSRNOG00000014125 ENSRNOT00000018898 3 1 1 60 10 66858554 66858575 CATGTTGCTTTGTCAATACCTG 59 66858515 66858533 TGCTGTAGTTGCTTCTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690806 ENSRNOG00000043288 ENSRNOT00000067898 1 1 1 60 17 21339197 21339215 ATTCAAGTTTCTGCGGGAG 58 21339155 21339175 CTGCTCATTATCTCCTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910719 ENSRNOG00000053256 ENSRNOT00000045736 2 1 1 60 15 35586370 35586388 GAAACCATTGCACAGTGAC 58 35586412 35586430 TGGAGTTCTGGCTTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520,ENSRNOT00000052315,ENSRNOT00000078619 2 3 3 80 1 220857895 220857913 CTCCTATGGGACCTTCCTG 59 220857955 220859649 TCATCGATATCACTGCAGGAG 60 NA Rattus norvegicus 81 Rab12 ENSRNOG00000019295 ENSRNOT00000026177 1 1 1 80 9 114685854 114685876 GATGAGATCTTTCTGCTCGTG 59 114684117 114684137 GATGCTATTGGATAACTCGCT 58 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000008898 1 1 2 112 5 107853559 107853577 CTAATGGTGCTGCACAAGG 59 107853388 107853486 TAGATAGGGCTCGCAATATCAC 60 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 2 1 1 80 3 8032903 8032921 AAAGCGTCTACACAGAGGA 58 8041857 8056733 CATGGTCTGTCACCTTCTG 58 NA Rattus norvegicus 81 Aebp2 ENSRNOG00000008929 ENSRNOT00000035507 3 1 1 80 4 174828996 174831363 CATCTACAGAACAATGCCACAG 60 174862223 174862241 GTGAACTCACCAGCAAAGC 60 NA Rattus norvegicus 81 R3hdm1 ENSRNOG00000004099 ENSRNOT00000005372 1 1 1 80 13 44893747 44896093 GATATTCTCCCAAGACTCCCT 59 44896215 44896236 GTACCAATAGTGTCCTCATCTG 58 NA Rattus norvegicus 81 Wdr88 ENSRNOG00000037393 ENSRNOT00000056583 1 1 1 80 1 91502731 91507362 CTGTTTACCATACAGGAGGCA 60 91502671 91502690 GCTGGTACACAAGAAGTGTC 59 NA Rattus norvegicus 81 Rictor ENSRNOG00000011341 ENSRNOT00000029565 2 1 1 80 2 56075132 56076894 GCTCTTACATATGGCAAACAC 58 56076935 56076954 GCCATATTCATAAGGGTCGG 58 NA Rattus norvegicus 81 Phactr1 ENSRNOG00000014264 ENSRNOT00000046523 1 1 1 80 17 23661584 23684388 TATGGATGGACCAGATCCTG 58 23684431 23684449 TTCTTTGGAGGTAGCGGAG 59 NA Rattus norvegicus 81 Socs1 ENSRNOG00000002568 ENSRNOT00000003458 3 1 1 225 10 4957792 4957810 CATTCGTGTGCACTTCCAG 60 4957999 4958017 GAGTACCGGGTTAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asrgl1 ENSRNOG00000020202 ENSRNOT00000027459 3 1 1 83 1 225313900 225313918 ACTTGGCTTATGCAACCTC 58 225311053 225313854 CTCCAGCTCCTATACAAGGT 58 NA Rattus norvegicus 81 AABR07006775.1 ENSRNOG00000047214 ENSRNOT00000072116 3 1 1 111 1 257747284 257749465 GGATCTTCACACTGTACAGC 58 257749539 257749557 AGGATTCCTAGTCCAGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076337 1 1 4 80 19 755466 755919 TCCTGTGAGAAAGCTGGTC 59 755959 755981 CCTCTTACCTGTTGTTTCATCAG 60 NA Rattus norvegicus 81 Olr766 ENSRNOG00000050138 ENSRNOT00000043664 3 1 1 60 3 102741571 102741590 ACCACACCTAAGATGATCAC 57 102741530 102741549 AGCCTGCAAAGGAAATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra1a ENSRNOG00000009522 ENSRNOT00000012736 3 1 1 91 15 43300268 43391905 TAGTGATGCCCATTGGGTC 60 43391957 43391978 GCAACTATTTAGATACCCGAGC 59 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 1 2 2 80 17 42724710 42724731 GTTCAAAGTCAAAGAGGTGGAG 60 42723990 42724672 CCAGGATAAACCCTAACAAGGA 60 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000049216 ENSRNOT00000071160 1 1 1 60 1 121201293 121201312 GGCTGCTGGTTATATTCCAG 59 121201252 121201270 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365622 ENSRNOG00000050411 ENSRNOT00000047138 1 1 1 60 3 102580141 102580160 CTCATCAAAGGCACTATCCA 57 102580182 102580201 CCCAAAGAATAGCACAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srxn1 ENSRNOG00000031167 ENSRNOT00000041456 1 1 1 80 3 147620536 147620554 TCTGTTCAGTCAGAGCCTG 59 147621141 147631323 AGAAGTGGTCTTCAGGTTACAG 60 NA Rattus norvegicus 81 LOC688176 ENSRNOG00000017329 ENSRNOT00000023259 3 1 1 84 14 82353911 82353929 CTCAAACCTACCTGTGCAG 58 82353973 82354407 GGAGTTCAGCCTAATATCAAAGG 59 NA Rattus norvegicus 81 Smek3 ENSRNOG00000032858 ENSRNOT00000040923 2 1 1 71 X 57867537 57867555 CCATCCATGTTTCAAGCAC 57 57867987 57868007 AGGTCTGAACATACTCAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Kdm1b ENSRNOG00000016519 ENSRNOT00000022244 1 1 1 80 17 17997206 17997225 CTAACTCCAGGCTACTCCAC 59 17996433 17997163 TATGCTCTGCACTGGAGAC 59 NA Rattus norvegicus 81 Prl3b1 ENSRNOG00000017185 ENSRNOT00000023086 2 1 1 80 17 42771848 42773488 ATACTCAGCAGGGTTCAACC 60 42771787 42771808 ATCAGATGACTGCAAATCTGAC 59 NA Rattus norvegicus 81 Cst5 ENSRNOG00000005545 ENSRNOT00000007336 1 1 1 111 3 144569964 144569985 CAGAAAGTGATCAACTTTGCTG 59 144570057 144572688 TCTTCCCAGACACAACCTG 59 NA Rattus norvegicus 81 Uncx ENSRNOG00000001284 ENSRNOT00000001730 2 1 1 91 12 17185604 17185623 TTCAATGAGAGCCACTACCC 60 17183574 17185550 TGGAACCAGACCTGAACTC 59 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 1 2 2 80 6 28710878 28710896 AAAGATGAGACGGAGCTGG 60 28710613 28710839 TAATACATCTAATCCACCTCCCTG 59 NA Rattus norvegicus 81 Tacr3 ENSRNOG00000009372 ENSRNOT00000012473 2 1 1 80 2 240021818 240021838 CCAGAACTTCTTTCCCATCAC 59 240021877 240052590 ATAGCCATATACCTGTCCACTG 59 NA Rattus norvegicus 81 Rin1 ENSRNOG00000050223 ENSRNOT00000072261 3 1 1 82 1 220336238 220336256 ATCTCTTTGGAGGGCTCAG 59 220336299 220336430 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 2 1 1 75 1 94759448 94760668 CAGACACCAGTCTTCTGGT 59 94759391 94759409 AACAGACAGAGTGTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 3 1 1 75 1 94759447 94760667 AGACACCAGTCTTCTGGTG 59 94759390 94759408 CAACAGACAGAGTGTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 2 2 2 80 2 196299005 196299194 AGTAGATAACCAGCGCCAG 59 196299237 196299256 ACAATAGACGGACACTGCTC 60 NA Rattus norvegicus 81 Tmem198b ENSRNOG00000006827 ENSRNOT00000008929 1 1 1 91 7 3226066 3226211 CAGCTCCAAGTTATCAGCAG 59 3225994 3226012 AGAATCAAGGTCCAGGACG 59 NA Rattus norvegicus 81 Olr1253 ENSRNOG00000046873 ENSRNOT00000044859 1 1 1 60 8 42377047 42377065 AACTTGGCCTTTGTAGACC 58 42377005 42377025 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc6a ENSRNOG00000017468 ENSRNOT00000023652 3 1 1 136 1 80423393 80423412 CCACAGTACCTAGAGGAAGC 59 80423626 80424176 ACCACCTGGAACTTACAGG 59 NA Rattus norvegicus 81 Aoah ENSRNOG00000054964 ENSRNOT00000087838 2 1 1 80 17 45882256 45890130 CCTTCCATGAAATAATAGAGGACTG 59 45882200 45882219 GATGGAATCCGTCTACAGGT 59 NA Rattus norvegicus 81 Pkia ENSRNOG00000012095 ENSRNOT00000016567 3 1 1 90 2 96600312 96600330 TTGGTTTCCTCTGCAAGTG 58 96596514 96600260 GTCCATCATCTTCACCTTCTG 59 NA Rattus norvegicus 81 Grid2ip ENSRNOG00000030927 ENSRNOT00000044378 2 1 1 80 12 13225397 13225419 GTAACTATCTCAACGATGGACAG 59 13224600 13225358 TGGAGTTTAGCTCTGTCAGG 59 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000081496,ENSRNOT00000021278 1 3 6 60 1 262013560 262013579 TCTTCTACTGGACGGATGAG 58 262013519 262013538 TCTGACTGCCTGAACTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000065194 1 1 2 80 X 63165758 63165959 TGGAGAAGATGACTTAGGTGG 59 63165698 63165716 GGATCAAGCAGTTCAACCC 59 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458,ENSRNOT00000083976 2 2 2 80 12 13544382 13544400 TGATGCTCACTTGTTCTGC 59 13544444 13549197 CTGAGCTCTGACTTTCCAG 58 NA Rattus norvegicus 81 Pdzrn3 ENSRNOG00000057556 ENSRNOT00000090506 2 1 1 80 4 133720701 133720719 CACATGGATATGCTCGAGG 58 133719887 133720657 TTCCTCATGCTTCTTCTGC 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 3 3 3 80 5 151051031 151052225 ATTTGACAGCCATGAGGAG 58 151050969 151050988 ATAAGTTCCAGGTCTTGCTC 57 NA Rattus norvegicus 81 Oprk1 ENSRNOG00000007647 ENSRNOT00000010254 2 1 1 80 5 13746515 13749897 TCAGGGAAGATGTGGATGTC 59 13746454 13746473 TCTTCATGAAGAGGTCCCAC 59 NA Rattus norvegicus 81 Abca15 ENSRNOG00000027505 ENSRNOT00000037026 3 1 1 80 1 190110072 190112887 AAACACCTACACAAGGTATTCC 58 190112925 190112946 TCCCTCATATACGTTCAAAGAC 58 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446,ENSRNOT00000077861 3 2 2 147 14 12995408 12995426 TTCGTCTTCTGCCTCTTCC 59 12995279 12995299 GTAGATCTGCAGATGGAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 1 1 1 85 7 98813173 98815613 GTCCACAGGGACAAATACC 58 98815661 98815680 GCCTTCATCATGTCCTTCTC 59 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 1 2 2 80 5 139067753 139067771 CATGAAGTCGAAAGCCCAC 59 139067815 139071097 TCACTGGTTCCTTCTTCGG 59 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489,ENSRNOT00000055540 1 2 2 80 4 176841434 176842561 TCATCGACCAACATATCCCT 58 176841373 176841391 AGATCATCCCAATAGCCGA 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231,ENSRNOT00000081677 2 2 2 80 9 55386007 55389466 GTATCACAAGGAAATGTCCCA 58 55385947 55385968 TTGTGTTGTCTGAACTGTAGTG 59 NA Rattus norvegicus 81 Nkd2 ENSRNOG00000016103 ENSRNOT00000021898 1 1 1 80 1 32077745 32078283 CACTTGAACATCGACGCAC 60 32078327 32078345 GTCATACAGCGTGAACGTC 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027372 1 1 10 60 18 30001623 30001643 TCCAGTATCAGAGGTCATTGG 59 30001665 30185398 GGGTTGAAAGCCATGATGG 59 NA DesignNoJunction Rattus norvegicus 81 S100a6 ENSRNOG00000011647 ENSRNOT00000015612 2 1 1 81 2 190007983 190008292 CACCATTGGTGCTAAGCTG 59 190008332 190008355 GTTTACTTCCTGATCCTTGTTACG 60 NA Rattus norvegicus 81 Rn60_20_0013.1 ENSRNOG00000061444 ENSRNOT00000043674 1 1 1 60 20 1299771 1299789 CTTTGCTTCATCACCACCA 58 1299813 1299831 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc13 ENSRNOG00000011491 ENSRNOT00000015344 3 1 1 80 8 112752160 112752180 TTAACATCGATAGGGAGCTGG 60 112747392 112752121 CCAGGCACTCATATTTAACCTC 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597,ENSRNOT00000089006 2 2 2 80 14 79946850 79946868 GGCTTGGATTCTAAGCACC 59 79945160 79946808 AGAAGATGATGCCTCTAGGAC 59 NA Rattus norvegicus 81 Hecw2 ENSRNOG00000013257 ENSRNOT00000017761 3 1 1 80 9 60498833 60498853 TCAGATTATGGGCTACTCCAG 59 60488034 60498791 TAATCCAACCCTTCCTCCC 58 NA Rattus norvegicus 81 Gcat ENSRNOG00000055408 ENSRNOT00000078383 2 1 1 82 7 120267331 120267349 CTGCTCAATATGGTGCCCT 60 120267395 120267504 CTCATCTGTGCCTCTTCCA 59 NA Rattus norvegicus 81 Fam117b ENSRNOG00000022066 ENSRNOT00000031261 3 1 1 82 9 66755547 66758475 CAGAACAGCTTAAAGAGATTGC 58 66758516 66758536 TTCTTTATCTCGATGGTGACG 58 NA Rattus norvegicus 81 Cln3 ENSRNOG00000019103 ENSRNOT00000025898 1 1 1 80 1 197997186 197997362 AGGATTCTGAGAGGGAGGAG 60 197997125 197997143 CCGCATTCTTCCAAAGGAC 59 NA Rattus norvegicus 81 Zfp18 ENSRNOG00000003981 ENSRNOT00000005518 1 1 1 80 10 52336322 52341957 ACTACAGGAGGAACAGTGG 58 52342001 52342019 TTCCCATAGGTTTCCAGCA 59 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 2 2 2 83 2 144560375 144560393 AACTGAACGACCAGTTGGA 59 144560438 144560537 ACAGTCTATCTGAAGGGTTCC 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090,ENSRNOT00000077994,ENSRNOT00000019040,ENSRNOT00000089736 1 4 4 80 17 27498399 27498422 GAAGATCCAATAATCGAGGATGAG 59 27498459 27500588 TTCTTTCTCTTCTGCCAAGTC 58 NA Rattus norvegicus 81 Ubr3 ENSRNOG00000008616 ENSRNOT00000011380 1 1 1 80 3 56212481 56212501 CTCTGCATGGTGTTGTATCTG 59 56212541 56213461 ACCCATTGATACCTCTTCCTC 59 NA Rattus norvegicus 81 Gabrr3 ENSRNOG00000001679 ENSRNOT00000002281 3 1 1 80 11 43072964 43072983 CAGCCATGTGCTTTATGGAC 60 43071889 43072924 TATAGGCATAGCTTTCCAGCTC 60 NA Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 1 1 1 60 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569341 90569361 GGGAGTTATCGCTAAGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748,ENSRNOT00000077789 1 2 2 119 16 19361805 19363123 ATTGAGGAGCATGCCTCTG 60 19361323 19361341 GATCCCATAGTCGAGTGCC 60 NA Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 2 1 1 80 18 48300205 48346221 GAAACCTATTTACAGGCCGTC 59 48346258 48346281 CAAGTGTCTTACATTGAGGAAGTC 60 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521,ENSRNOT00000046456 3 2 2 80 6 137924569 137924593 CAGACTATGTCTACTTTGAGAACTC 59 137924630 137929178 CGTTGGCTGTCTTATTGAGC 60 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 2 2 2 80 8 48667905 48667924 GGAGTCTGGAGTCTAGATGG 58 48667765 48667862 ATCTTCTTGCTGAACAGGG 57 NA Rattus norvegicus 81 Tipin ENSRNOG00000043068 ENSRNOT00000066973 2 1 1 82 8 69753495 69754154 TGATGAAGGATCAGGGAGTG 59 69754194 69754217 TAGCATCTAGCTTGGGTATATTCC 60 NA Rattus norvegicus 81 Afap1l2 ENSRNOG00000017164 ENSRNOT00000023113 2 1 1 80 1 277755239 277761263 CTCCACCCAAGATGATTCCA 60 277755178 277755197 CAGCCTCTTCATAGTAGCCC 60 NA Rattus norvegicus 81 Frmd4b ENSRNOG00000007764 ENSRNOT00000010717 3 1 1 80 4 129672585 129674520 CACCTATGATGATCCCAATGAC 59 129672526 129672548 GGTAGAATTCTTGGAGAATGAGG 59 NA Rattus norvegicus 81 Ppm1l ENSRNOG00000046168 ENSRNOT00000074564 2 1 1 80 2 166140226 166140245 CAGCAGATCTTGTCAATCGA 58 166140287 166206874 GATCAAACACGTTGTTCCTG 58 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 3 1 1 61 X 48196972 48210294 GATGGGAGTAGAAGAAATCATACC 59 48210312 48210332 TTGTCTGTTGAAGGACATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1307 ENSRNOG00000048037 ENSRNOT00000060092 1 1 1 60 8 43304204 43304224 TACACAGTGATGGCTTATGAC 58 43304164 43304183 TTATTGAGTAGCGAAGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcr ENSRNOG00000001304 ENSRNOT00000001766 2 1 1 80 20 14426177 14426195 AGGAAGTAGGCATCTACCG 58 14423755 14426136 CCTTGTTATTGACATCAAAGGC 58 NA Rattus norvegicus 81 Wee2 ENSRNOG00000026446 ENSRNOT00000036398 3 1 1 80 4 68621128 68625125 ATACTGTAATGGTGGGAGCC 59 68625168 68625186 TTGAGTTTGGGCTCTTGGA 59 NA Rattus norvegicus 81 RGD1560207 ENSRNOG00000030048 ENSRNOT00000045901 3 1 1 80 X 46844499 46844517 CCTGCTGAATTTGGATGGA 58 46836824 46844455 ATCAACAATGCCTTTGGCT 58 NA Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 3 2 2 81 2 197752733 197754358 AGAAGCAGGATACACAGGAG 59 197754402 197754420 AGGCTTGGATATTTGGCCT 59 NA Rattus norvegicus 81 Hspd1 ENSRNOG00000014525 ENSRNOT00000066589 3 1 1 80 9 61689946 61689965 GAGCCTTAATGCTTCAAGGT 58 61688133 61689906 TAATCACTGTTCTTCCCTTTGG 58 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493,ENSRNOT00000034256 3 2 2 60 3 142781732 142781752 AGCTATTCCTGGATTCCAGAG 59 142781444 142781712 TTGGGCTGTACTGATTCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 3 2 2 94 15 55421916 55423682 GAATTTGGTGAGACCTGGG 58 55421840 55421858 TTTACCACCGAAGCAAAGC 59 NA Rattus norvegicus 81 Spg20 ENSRNOG00000014155 ENSRNOT00000057978 1 1 1 80 2 144536239 144538599 ACAACATTCTGTCAGGTGC 58 144538642 144538661 CTTTCTGAATTGCTTTGCCA 58 NA Rattus norvegicus 81 Rhebl1 ENSRNOG00000054385 ENSRNOT00000089523 1 1 1 80 7 140555043 140555061 GCAAGACAGTGACTCTTGG 59 140554706 140555002 GCAGAATGCTGTACTTATCCTG 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 1 1 1 116 3 81509499 81510706 AGCTGAGTTCCAGAAGACC 59 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cenpo ENSRNOG00000050111 ENSRNOT00000070979 3 1 1 80 6 28660631 28660650 CAAGATTCGAGAACTGCAGC 60 28652959 28660592 GAAGATTCTTTAACTCTGGCTCG 60 NA Rattus norvegicus 81 AABR07038477.1 ENSRNOG00000038369 ENSRNOT00000058420 1 1 1 80 X 50599081 50599100 GAAGAGATCCAGGAAGATGC 58 50599141 50601824 CCATAAGAACAATTGCAAGCC 59 NA Rattus norvegicus 81 Enox1 ENSRNOG00000047817 ENSRNOT00000074868 1 1 1 80 15 59759463 59776753 GATCCTCACTCAATTTGAGCAG 60 59776794 59776812 GCTTTCGAGAAATGGTCCC 59 NA Rattus norvegicus 81 Rab10 ENSRNOG00000047088 ENSRNOT00000071425 3 1 1 81 6 27678165 27678184 TGTATGACATCACCAACGGT 60 27674443 27678122 ACATCTTCATTGGCATGCTC 59 NA Rattus norvegicus 81 S100a9 ENSRNOG00000011483 ENSRNOT00000015351 3 1 1 99 2 190099757 190100114 TTAGCTTTGAGCAAGAAGATGG 59 190099679 190099702 CATACTTCCTAGAGTACTGATGGA 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 1 2 2 80 14 108443508 108443527 CTGAAGGAAGCCTACAAGTG 58 108443569 108446264 GAACAAGCTCTTCCCATCAG 59 NA Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 1 1 1 60 20 2331871 2331889 GAACCTTCCGCAAGTTCAC 60 2331913 2331931 TAGGACATGTCCATCAGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911822 ENSRNOG00000020799 ENSRNOT00000028222 3 1 1 86 1 88687238 88687336 TGCCAGGAATGTAATAACATGC 60 88687597 88687615 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 3 2 2 94 2 189583037 189583058 AGAGAATCAAACTGCAAGTCTG 59 189584344 189584579 TAGGATAATGCCCATGGCTC 60 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822,ENSRNOT00000042524 3 2 2 80 1 166231701 166231722 GAAGTTGGCTAGTCAATACCTG 59 166231757 166247858 GGATACATACTCCTGTAATCATTCC 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863,ENSRNOT00000084155 2 2 2 80 6 41809958 41809977 CCATCTACCTGTGGAATTGG 58 41809247 41809919 GACCAAGAGTATCAGATCTTGTG 59 NA Rattus norvegicus 81 Ucp3 ENSRNOG00000017716 ENSRNOT00000024005 1 1 1 80 1 165491236 165491256 TTGTCAATTGTGCTGAGATGG 59 165491297 165491684 GGAAGTTGTCAGTGAACAGG 59 NA Rattus norvegicus 81 Olr1121 ENSRNOG00000006428 ENSRNOT00000008415 2 1 1 60 8 18719918 18719939 GGTGTATTCCTGTTTCATCTCC 59 18719879 18719897 ACAGAATACCAGACGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 3 1 1 81 17 15085053 15085073 TTGAGTTCCGTGTGAAATCTG 59 15084703 15085012 AGCTGATCTATCGTTCCTGTG 60 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 2 1 1 75 5 164921123 164921141 TAACGAGACATCACCTGCT 58 164919115 164921084 GAGGTCACAGCAAGTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Slc35b1 ENSRNOG00000004510 ENSRNOT00000006179 3 1 1 80 10 83205811 83205831 TACCAAACAGGTTCCAATCAC 59 83205873 83207047 AGTAAACAGGATCCCAGCA 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000084548 2 1 3 219 20 2099783 2099802 ACCTCTTCTCCACTCTTCTC 58 2099405 2099423 CCATATAGCCTCGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Uroc1 ENSRNOG00000043404 ENSRNOT00000038251 3 1 1 80 4 122266559 122269039 GAAGATCAAGGCACCAGTG 59 122269082 122269101 TTCGAAGTCTCCCTAAAGGG 59 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 1 2 2 80 5 36586200 36596524 GATTTAGCAGGTTTCTGAAGGT 59 36596563 36596583 AAGCGTCATTAAGAAAGTGGC 60 NA Rattus norvegicus 81 Tp53i11 ENSRNOG00000008738 ENSRNOT00000057001 3 1 1 98 3 82092219 82092237 CAGACAGATCTTGTGAGCC 58 82092299 82092812 AACCTGGCTGATCTTTGAC 58 NA Rattus norvegicus 81 Tab3 ENSRNOG00000003643 ENSRNOT00000004854 3 1 1 82 X 54083858 54083879 CGAAGAATTAGTGTGACTTCCA 59 54083919 54086209 CAGCCACTTAAATGTTCTTCTG 58 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 1 2 2 80 10 83290704 83293634 AGCTGAAATGGTGTTTGCG 60 83293678 83293696 CCAACAACAGGTAGAGCGA 60 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 1 2 2 74 1 84893943 84894773 TGGTTCAGTGACATTTAGGG 58 84893888 84893906 TTCTGAGTAGCATCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Mtmr12 ENSRNOG00000022929 ENSRNOT00000036633 3 1 1 80 2 62299432 62300324 ATACTAACATGGGCAGGGAG 59 62300366 62300385 ACTGTACTGACCAATCCCAC 60 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049356 ENSRNOT00000073212 2 1 1 60 8 41898711 41898732 CTCTTCTTGGGAATCTATGTGG 58 41898752 41898771 CAATCAGAACAATCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915,ENSRNOT00000018185 1 2 5 81 7 120771635 120771739 GATCAAATCAGGCCTGACC 58 120771572 120771590 GGAAATCCTCTGCAAGCTG 59 NA Rattus norvegicus 81 Trim80 ENSRNOG00000028812 ENSRNOT00000065292 1 1 1 80 10 103997577 103997790 GTGAGTTTCCTCTCGAAACTG 59 103997828 103997850 TTTAACCTCATGGAGGATCTCTG 60 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 1 2 2 80 15 46116200 46116219 TCACTCTGTCATCATGTGGG 60 46116261 46121906 GCCTGGACTTTGTCATTGTG 60 NA Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 3 1 1 80 1 226104656 226104677 AATATCTTCCACAAGGATCCAG 58 226104717 226104992 CTTCTTGCCATACTCCACAG 58 NA Rattus norvegicus 81 Olr1311 ENSRNOG00000048548 ENSRNOT00000047759 1 1 1 60 8 43382397 43382417 TACAGCTCCAAAGATGTTGTC 58 43382439 43382457 TCCCTTGAAAGAGATCCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 3 1 1 81 11 67451720 67452326 ATTGCTGACAAGGTCAAGC 59 67452370 67452389 GAACTTTATACTGGACGGCC 59 NA Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000081587 1 1 2 250 12 18936658 18936681 GGAGAAGGATTACATAACCATGTG 59 18937641 18937660 ATCTTGCCTGGATTTCTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000081587 2 1 2 251 12 18936658 18936681 GGAGAAGGATTACATAACCATGTG 59 18937641 18937661 CATCTTGCCTGGATTTCTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000065347 1 2 3 191 13 50498918 50498936 CTCATGGAGCATGGAGGAG 60 50497212 50498763 TCTTTGAAACGCTTGGTCC 59 NA Rattus norvegicus 81 Cep95 ENSRNOG00000014354 ENSRNOT00000066525 1 1 1 80 10 94994441 94997609 CGTCTCACAACAGAAGTGC 59 94997652 94997671 TGGCACTTTCTAGCTCTTCC 60 NA Rattus norvegicus 81 Cep95 ENSRNOG00000014354 ENSRNOT00000066525 2 1 1 80 10 94994445 94997614 TCACAACAGAAGTGCATCTG 59 94997657 94997675 TCCTTGGCACTTTCTAGCT 59 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000078278,ENSRNOT00000009687 1 2 2 80 3 79591277 79591296 CCACCAGTCCAGAATCTACC 60 79591338 79593652 CACCAATTGCAGTTTCTCCA 59 NA Rattus norvegicus 81 Notch3 ENSRNOG00000004346 ENSRNOT00000037456 1 1 1 80 7 14151981 14153170 GTGTCTTCCAGATTCTCATCAG 59 14151920 14151939 CCAGGATCAATGCAGTAGAG 58 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 3 1 1 80 18 51643524 51648163 ATCTGGGCAGATATTCCTGC 60 51643463 51643482 TAATTGGATCTTCTCCCGCA 59 NA Rattus norvegicus 81 Fam129c ENSRNOG00000039357 ENSRNOT00000034589 3 1 1 84 16 20035109 20035737 GTAACTTGGAAACGCCTGAG 59 20035784 20035802 ACATCCCTGTAGACACCCT 60 NA Rattus norvegicus 81 LOC100910252 ENSRNOG00000046635 ENSRNOT00000072493 3 1 1 81 1 221461697 221461715 CTTCAGGAAGCTCTGTACG 58 221461760 221461910 CGTACAACAAGGTAGGCAG 58 NA Rattus norvegicus 81 Zfp711 ENSRNOG00000022391 ENSRNOT00000046364 2 1 1 80 X 84089416 84089435 CCTTGAGATTCAGCTTGAGG 58 84089475 84090247 CGTCTTTCATCATATGATGCAG 58 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 3 2 2 80 5 22393170 22469217 TGGGATCAGAGTAGGAACTC 58 22469258 22469278 CTCAGGATCTTCGATAAGGAC 58 NA Rattus norvegicus 81 RGD1309621 ENSRNOG00000036913 ENSRNOT00000055437 3 1 1 82 4 183900631 183902129 ACCTGTGCAAGTTTCAGGA 60 183902173 183902193 TTGATTCAGGCATCTTTGTCC 59 NA Rattus norvegicus 81 Rasa2 ENSRNOG00000011909 ENSRNOT00000016327 2 1 1 80 8 104477360 104480761 GTCTTCTACTTTGAGGTAACCAG 59 104477302 104477322 CTTCTCAATGTCTTCCTCCTC 58 NA Rattus norvegicus 81 Mansc4 ENSRNOG00000036925 ENSRNOT00000055463 1 1 1 80 4 181477109 181477129 CCAGTTCCTCAAGTACTACTC 57 181472358 181477068 TTACAGGAAACATCCTTCCG 58 NA Rattus norvegicus 81 Pgc ENSRNOG00000014492 ENSRNOT00000019650 3 1 1 80 9 15268178 15268673 ATTACCATTGACGACTTCCTC 58 15268118 15268136 TGTGTCTACAATGCCTTGG 58 NA Rattus norvegicus 81 Adamts19 ENSRNOG00000019577 ENSRNOT00000026543 1 1 1 80 18 54000091 54009854 ATGAAATGGGTCACAACATGG 59 54009893 54009914 CACCAGACATGATATGAAGACC 59 NA Rattus norvegicus 81 Utp20 ENSRNOG00000005823 ENSRNOT00000008317 1 1 1 80 7 29362967 29363095 TTACCTCATCTCAGGCCAC 59 29362905 29362923 AACAGCCAGGAAGAGTGAC 60 NA Rattus norvegicus 81 Sun3 ENSRNOG00000005105 ENSRNOT00000006818 3 1 1 80 14 89220837 89220855 ACATCTCGGAGAAGGTGTC 59 89217389 89220796 ACTTCTTGGTAACACCATAGAC 58 NA Rattus norvegicus 81 Klk12 ENSRNOG00000034012 ENSRNOT00000024758 2 1 1 84 1 99706930 99708024 CAGTGGCAAGTACATGGTG 59 99708072 99708090 GGAGAAGGTGGTGAGTCTC 59 NA InUTR Rattus norvegicus 81 Orc6 ENSRNOG00000024043 ENSRNOT00000039467 3 1 1 80 19 27463567 27463585 CCTCAGAAACCAGCAATGC 60 27462296 27463526 TTAGATACGCTCTATCCAAGGG 59 NA Rattus norvegicus 81 Spc25 ENSRNOG00000006731 ENSRNOT00000008837 3 1 1 80 3 55444221 55444239 AAACGGCTGCAGAAATCAG 59 55441317 55444177 CTGCAGCTTATCACCAGGA 60 NA Rattus norvegicus 81 Il16 ENSRNOG00000011680 ENSRNOT00000016289 3 1 1 80 1 145786989 145787007 CACAAGGAAGAAGGTGCTG 59 145785312 145786945 TCTGTGAACCGTGATCACC 60 NA Rattus norvegicus 81 Cdr2 ENSRNOG00000017260 ENSRNOT00000023189 2 1 1 80 1 190901421 190914466 GGACCTCCAGCAAGATCTC 60 190901359 190901379 AGAGAATCCTCCAACTCTGTG 59 NA Rattus norvegicus 81 Ggh ENSRNOG00000007351 ENSRNOT00000009758 1 1 1 80 5 34051067 34051088 ATGACAACTTACTGACACTCAC 59 34051127 34053551 TTCTGCTCTGCTTTGAATCTC 59 NA Rattus norvegicus 81 Rftn2 ENSRNOG00000015594 ENSRNOT00000020910 2 1 1 81 9 61780505 61780523 GAGTCCCAGGCTCTAACAG 59 61779330 61780461 GTCTTGATTTCACAGCCCTC 59 NA Rattus norvegicus 81 Mir3551 ENSRNOG00000048590 ENSRNOT00000072847 3 1 1 62 X 151272885 151272904 ATGGGCAGTACTGTCTTCAC 60 151272842 151272863 CACCATGGTGAATTTCATAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355,ENSRNOT00000013621,ENSRNOT00000080788,ENSRNOT00000079513 3 4 4 80 4 152473335 152475510 CCGTCTCTAATTCAGACCCA 59 152473274 152473296 TGGAATAGTCTCTGGACTAAGTG 59 NA Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000084903 2 1 2 75 6 29239012 29239030 GTATGAGTTCACCGACCCA 59 29236867 29236885 ATAACATCGTGTGGTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 2 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 RGD1563015 ENSRNOG00000006658 ENSRNOT00000008726 3 1 1 80 5 138263446 138263464 TTAATGCTTTGTCCCTGGC 58 138260977 138263403 AAGCACAGTGTGATTTCCTG 59 NA Rattus norvegicus 81 Nlrp4b ENSRNOG00000027705 ENSRNOT00000035435 2 1 1 80 1 73949306 73949327 AATGCCTATGAGATCATTGACC 58 73948442 73949267 CAGTTGGCTAACATGATAGCA 59 NA Rattus norvegicus 81 Ptdss2 ENSRNOG00000015912 ENSRNOT00000021925 1 1 1 80 1 214144656 214144674 GTGATGTTCGAGTTCCTGG 58 214144718 214144824 CATGATCCAATGGTCCCAC 58 NA Rattus norvegicus 81 Amdhd2 ENSRNOG00000006460 ENSRNOT00000008537 3 1 1 84 10 13530673 13530773 CATGTTGCCTTTCCACCAC 60 13530607 13530627 ATAGAAGATACAGTGGCCTGG 59 NA Rattus norvegicus 81 LOC679782 ENSRNOG00000042852 ENSRNOT00000062030 2 1 1 80 1 1618755 1618774 TGAACCAAAGCCTGAAAGAC 59 1618816 1619100 AGGTGTGATTACCCTTGGAC 60 NA Rattus norvegicus 81 Man2b1 ENSRNOG00000023910 ENSRNOT00000037699 2 1 1 80 19 26206596 26206616 AGAACTTCTCATTCTGTCGGG 60 26206655 26206915 AAATAATTACCCGGAAGTGCTC 59 NA Rattus norvegicus 81 RT1-M1-4 ENSRNOG00000027873 ENSRNOT00000038626 1 1 1 89 20 2390418 2390436 GCCCTGAAAGATATTCGGT 57 2390096 2390365 TGATATCCTGGACTCACCA 57 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773,ENSRNOT00000089005 3 3 3 80 20 13969766 13969785 AGGTCTTGGAAGTATTGCTG 58 13969828 13970522 ACAGAAACATGCCCTTCAG 58 NA Rattus norvegicus 81 Sgpp1 ENSRNOG00000005175 ENSRNOT00000006913 3 1 1 84 6 98683485 98683503 GGGCTGATTCTCATTCCCT 59 98677740 98683437 CAATGACGTCCAGGATGGA 60 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 2 2 2 80 3 47475066 47475084 GCATATGAAGCCTTCCGAC 59 47475125 47488365 TTCATAGTTCTCAGTCTTCTGC 58 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 3 2 2 80 3 7126637 7127766 TACAAGAGCATCCTGGTGAC 60 7127806 7127827 CTCATCTAGGTTGTGTTTGTCC 59 NA Rattus norvegicus 81 Slc24a1 ENSRNOG00000052051 ENSRNOT00000077152 1 1 1 80 8 70413546 70413564 CATCACCTTCCTGGGATCC 60 70412635 70413502 GTTTCACCAACCTGGTGAG 59 NA Rattus norvegicus 81 Rn60_14_0459.2 ENSRNOG00000051132 ENSRNOT00000073146 1 1 1 60 14 46070280 46070299 GGTTCAGACTTTGCTTCAGG 59 46070239 46070257 GGCCTGGTAAGTGTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem139 ENSRNOG00000028024 ENSRNOT00000033775 2 1 1 82 4 71650746 71650765 GTTATGGAACGGTGTCTCCA 60 71650810 71651047 TCATTGACCTGTGCATTGC 59 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 3 2 2 80 11 67672246 67672975 CAGAATTTGCTAAGGTTTCTCC 58 67672187 67672206 CATCAGCCAGTACATCAGTG 59 NA Rattus norvegicus 81 Ccdc109b ENSRNOG00000009433 ENSRNOT00000012587 2 1 1 80 2 230201339 230201359 TACGTTCTTCCTTACGTTTGC 59 230200178 230201300 GATTCGTAAGTGTAGTTCTGCC 59 NA Rattus norvegicus 81 Ddrgk1 ENSRNOG00000021232 ENSRNOT00000030192 3 1 1 80 3 123200302 123203377 AGGAAGAACAGAAGGAAGAGG 59 123200242 123200261 TCAGTTTCAGGTACTCCTCG 59 NA Rattus norvegicus 81 RGD1306746 ENSRNOG00000017380 ENSRNOT00000023654 1 1 1 80 4 118257417 118262041 ATCAGTTTGACGGCAAACC 59 118262083 118262103 TGGATATTCTCTGTTGCAAGG 58 NA Rattus norvegicus 81 Vdr ENSRNOG00000054420 ENSRNOT00000082429 3 1 1 80 7 139346987 139354202 CCCAGGATTCAGGGATCTC 59 139346925 139346944 GAGCGTAACATGATCACCTC 59 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 2 1 1 81 6 34155199 34159854 GTCACAGGAGCAAATGTAGC 59 34159895 34159916 AAATCAACGCTGAAGTACTTGG 60 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000006466 ENSRNOT00000008523 3 1 1 86 4 82257235 82258213 ATTAGTCACGACAACATAGGTG 58 82257170 82257188 TTCTTTCTCCAGCTCCAGG 59 NA Rattus norvegicus 81 RGD1564114 ENSRNOG00000028805 ENSRNOT00000049889 1 1 1 80 3 7542394 7542412 CAGCAGCTATGGATACAGG 58 7535833 7542352 CTTTCCCAGGATTACCTTCTG 58 NA Rattus norvegicus 81 Rn60_15_0538.1 ENSRNOG00000050211 ENSRNOT00000071777 2 1 1 60 15 49997531 49997551 CCTGTTTGTTCCTTTGATCCA 59 49997491 49997511 CCATTTCTGAGTTGACACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slpi ENSRNOG00000046699 ENSRNOT00000076191 2 1 1 81 3 160801450 160801468 CCAGGAAAGCAGAGATGCT 60 160800913 160801405 TCTTCTTCACTGGTCCACG 59 NA Rattus norvegicus 81 Zmym1 ENSRNOG00000013855 ENSRNOT00000064015 2 1 1 81 5 145114415 145114433 ACGAAAGCCATGTGTTACC 59 145111081 145114370 GGGTGGTTTAGTGGATGTC 58 NA Rattus norvegicus 81 Supt16h ENSRNOG00000011953 ENSRNOT00000016288 3 1 1 80 15 28590432 28590543 CAGCAGATTCAGAAGGCTC 58 28590370 28590389 TTCCCGAATATGTGGTTCCT 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 3 2 2 81 8 71191713 71191732 CTGATAGCAACACCAAACCC 59 71191775 71192200 CCATCAGGTCATAAGGGTCC 60 NA Rattus norvegicus 81 Rn60_X_0637.3 ENSRNOG00000051241 ENSRNOT00000076267 1 1 1 60 X 63102329 63102347 TTTCCGTCTTCCACTACGA 58 63102287 63102305 GTCTTGGCAAGTGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M10-2-ps ENSRNOG00000054348 ENSRNOT00000082861 3 1 1 80 20 2460560 2460900 ATATTGGGAGAAGGAGACACC 59 2460940 2460960 GTAATTACCTCGGAGGAAGGT 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151,ENSRNOT00000034495 2 2 2 80 5 17643494 17643512 GAATGGTCAAACAGGTTGC 58 17642203 17643451 AAACCTTATAACCAGCACCA 57 NA Rattus norvegicus 81 Commd7 ENSRNOG00000010538 ENSRNOT00000014038 3 1 1 82 3 149103724 149103997 GTTTGGAGTGACGTCTGGA 60 149102457 149102477 TTCCTTTCTTAACCACCAGCT 60 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 2 3 3 84 7 2907679 2907934 AGAGCGATGAGATGAATGTG 58 2907614 2907632 CCTTGGTCCTTGTTCTTGG 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787,ENSRNOT00000023103 1 2 2 80 4 118208114 118217804 TGCCCAAGACTCTATACGT 58 118217848 118217866 GTCCGATCTGGCTAAAGAG 57 NA Rattus norvegicus 81 Fzd2 ENSRNOG00000021962 ENSRNOT00000032944 2 1 1 60 10 90551228 90551251 CTTCATGATGCTGTACTTCTTCAG 60 90551270 90551288 GAGGGACAGAATCACCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan6 ENSRNOG00000003786 ENSRNOT00000005165 1 1 1 80 X 104723425 104723448 CAACTATAGAGTCAGAAATGGGAG 59 104721565 104723389 CGAGAAAGATTCCAATTAGCTG 58 NA Rattus norvegicus 81 RGD1565752 ENSRNOG00000038337 ENSRNOT00000058376 1 1 1 60 6 103820260 103820279 CTACTCCAGAGATGTCCTCC 58 103820301 103820320 TACCAAGTTGAGAACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081091,ENSRNOT00000081695,ENSRNOT00000091967 3 4 7 111 20 2515882 2515900 CTCTGTGAAGAGGACGCTC 60 2517088 2517106 ACAGGTCTGTACTGTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Gpr156 ENSRNOG00000002797 ENSRNOT00000003773 2 1 1 80 11 65348683 65350355 ACAACCATTACCGACTCCC 59 65348621 65348641 AAAGGTCCAAATAACACCCAG 59 NA Rattus norvegicus 81 Ankrd22 ENSRNOG00000019190 ENSRNOT00000026093 1 1 1 80 1 252448614 252461201 TCCTATATTCTGAGCCCATCTG 59 252448555 252448573 GGTTGCTTTCTTTCACCCA 59 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 3 1 1 175 10 105564935 105564954 CTCTCCTGAAAGCTTCTCCT 59 105565094 105565114 GGTTTGACCCTTCTGACCT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07066648.1 ENSRNOG00000047075 ENSRNOT00000073673 2 1 1 81 9 12115066 12115086 GAAGTGTGACTTTGAGAGGGA 60 12115129 12115864 GACATCCAGCCTGTAGTCC 60 NA Rattus norvegicus 81 RGD1309748 ENSRNOG00000002545 ENSRNOT00000003439 3 1 1 80 10 6858574 6868743 CCAACCTCTATAAAGAAAGTGTGG 60 6858517 6858536 TATTTCGTCGCTGATAGCCA 59 NA Rattus norvegicus 81 Ramp1 ENSRNOG00000019926 ENSRNOT00000027012 2 1 1 94 9 98334299 98363637 GACCATAGGGAGCTATGGG 59 98363695 98363713 AGAACTTGTCCACTTCCGG 60 NA Rattus norvegicus 81 Tbc1d10b ENSRNOG00000017349 ENSRNOT00000023706 2 1 1 80 1 198648354 198648632 TTTCCAGAAGGTAAAGCTACG 58 198648294 198648314 CTATTAGACAGGTACTGCCAG 57 NA Rattus norvegicus 81 Espnl ENSRNOG00000024717 ENSRNOT00000033629 2 1 1 80 9 98480222 98481809 AGAAGATCAGGACCAGAGTC 58 98481852 98481870 TGAGTCTGCGAATACCTCC 59 NA Rattus norvegicus 81 Mettl5 ENSRNOG00000008469 ENSRNOT00000011303 1 1 1 80 3 56102333 56104158 AGATTATCGCAGAGCTTCG 58 56101799 56101817 GGTCCACTTCAATGTCCAC 59 NA Rattus norvegicus 81 Naa16 ENSRNOG00000045863 ENSRNOT00000071805 1 1 1 80 15 61636022 61639928 GCAACTCCGTTCTCTAGAC 58 61635960 61635978 CTTCTCGGTGAAACTGCTC 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 1 2 2 80 9 49867750 49872077 GAAGTTTCAGGTAATGTACAGGAG 59 49867693 49867711 TTTGCTTCCAGGAACTGGA 59 NA Rattus norvegicus 81 Rogdi ENSRNOG00000003125 ENSRNOT00000004176 2 1 1 80 10 10761873 10762665 ATCCTTAAGGAGGCCTCTC 58 10762709 10762727 CAGGATGAAGTTCTCCTGC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000085906 2 2 8 80 13 68719271 68719484 TCTTAACATTCGTAGACACCAG 58 68719525 68719543 TTCCAAGATTCTGCACCTC 58 NA Rattus norvegicus 81 Kctd13 ENSRNOG00000020010 ENSRNOT00000027129 3 1 1 105 1 198374455 198375473 TACTCCTATACCAGCACTTCAG 59 198375539 198375557 GGACGTCCTTGAGGAAGAG 60 NA Rattus norvegicus 81 Mir181a2 ENSRNOG00000035630 ENSRNOT00000053753 2 1 1 60 3 23150363 23150381 CAAGGCAGCCTTAAGAGGA 59 23150404 23150423 TTGAATCCCAAACTCACCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910611 ENSRNOG00000046375 ENSRNOT00000074588 2 1 1 82 1 82817043 82818369 CTGCTCAGATATGCTGACCT 59 82818413 82818432 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Adcy8 ENSRNOG00000004890 ENSRNOT00000006789 2 1 1 80 7 105404722 105404741 ATACCCTTGAAGAACCTGAC 57 105394828 105404681 AGTGAAGACAAAGTACTCTGG 57 NA Rattus norvegicus 81 Phpt1 ENSRNOG00000016723 ENSRNOT00000022495 3 1 1 80 3 2797296 2797808 ATGGCTATTCTATGGGTTACGG 60 2797237 2797259 CCTCATAATCAGGATACTTGGCT 60 NA Rattus norvegicus 81 Chrne ENSRNOG00000003777 ENSRNOT00000005050 2 1 1 80 10 57241739 57241757 TCTTTGCAGTGGATGACGA 59 57241405 57241695 CCCATTCTCCATTCTCGGT 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313,ENSRNOT00000039652 2 2 4 80 2 8935255 8938877 ATGGAAGAGGTGCCATCTG 60 8935193 8935213 GGGACTTGTCTTCAAATCAGG 59 NA Rattus norvegicus 81 Tas2r114 ENSRNOG00000005692 ENSRNOT00000007497 1 1 1 60 4 165831509 165831530 TGACTATTGCATTCCTCTATCC 58 165831470 165831490 CGGCTGTATGCTAGAATTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pth ENSRNOG00000014318 ENSRNOT00000019199 1 1 1 62 1 178216458 178216476 TTTGTCTCCTTACCCAGGC 59 178216303 178216323 GCTGTATTTCACTGACAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_6_1181.1 ENSRNOG00000027960 ENSRNOT00000039048 2 1 1 88 6 107572771 107575371 CCCAAGGACACCTTAGGTC 59 107572701 107572719 GGAAAGAGGCCATGGAGAG 60 NA Rattus norvegicus 81 Olr796 ENSRNOG00000049431 ENSRNOT00000043710 2 1 1 60 3 103249270 103249289 AAATGAAGAGGGCAATGAGG 58 103249309 103249330 CAAGAGATTTGTCTATAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f2 ENSRNOG00000047741 ENSRNOT00000072618 3 1 1 87 5 154527957 154527975 CTTCAAGGAGCAGACAGTG 58 154528026 154530726 AATCTGCAGGTTCTCCTCC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 2 3 4 80 10 67594740 67602001 GAGGAGAAAGAGATGAAACCA 58 67602041 67602061 AGTGCCATCATTATCTTGGTC 58 NA Rattus norvegicus 81 Hoxb3 ENSRNOG00000008313 ENSRNOT00000011027 3 1 1 212 10 84193591 84193609 AAAGAGTCAAGGCAAACGT 58 84194614 84194632 CTCCTTCTCCAGCTCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Hsf4 ENSRNOG00000015253 ENSRNOT00000065013 2 1 1 80 19 37231027 37231160 ATGGAGTTGTCTCTGATGCA 59 37231202 37231221 ACCTGAAGAAGTCAAGTCCT 58 NA Rattus norvegicus 81 Rpl18 ENSRNOG00000021035 ENSRNOT00000028555 3 1 1 81 1 101702000 101702018 CACAACAAGGACCGAAAGG 59 101702062 101702276 ACCTGTACAGCTTGACTAGC 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076460 2 1 4 80 15 36878957 36879184 TCATTGTACACAGGCATCC 58 36879226 36879246 TTCTGAAGCTCTGTAGTTGAC 58 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076030 3 1 4 80 15 36905013 36905032 ACCAAGTTGGAACAAGAAGG 58 36905069 36910632 CCATGGAATATTCCTAGAAATGAGG 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 3 1 1 96 3 2443901 2444225 GTTCTGGGAGGTAATCAGC 58 2443823 2443841 GTAGTACACGTTGATGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1166 ENSRNOG00000046909 ENSRNOT00000048326 2 1 1 60 8 20266580 20266599 AATCCCTTCCTCAAGTAGCA 59 20266622 20266640 TACGGACAGATGAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020012 3 1 7 129 17 57074600 57082578 GATGAAACTGCTGCCACAG 60 57082670 57082689 CTTCTTCTGCTAGTTGCTGG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000092187,ENSRNOT00000020012,ENSRNOT00000089536 1 3 7 74 17 57082684 57082702 AAGAAGCAACTCGAAAGCG 59 57087779 57087797 TCTTCTTCCTGCGACACTC 60 NA DesignNoJunction Rattus norvegicus 81 Prss55 ENSRNOG00000047258 ENSRNOT00000072994 2 1 1 96 15 47439005 47442520 CAAATGTTGAATGCGGTGTG 59 47438928 47438946 CATGGGAATTCACCCACCT 60 NA Rattus norvegicus 81 Hesx1 ENSRNOG00000014133 ENSRNOT00000019113 3 1 1 84 16 2636221 2636239 AATGAACTGCTATCCTGGC 58 2636285 2636386 GAACCAAATCTGGATTCTGTC 57 NA Rattus norvegicus 81 Il5ra ENSRNOG00000005954 ENSRNOT00000008403 2 1 1 80 4 138803047 138804049 ATCTGCAGAGTGTATCACCT 58 138802986 138803005 CACAGGGAGATCTTTGATGC 59 NA Rattus norvegicus 81 Olr332 ENSRNOG00000024746 ENSRNOT00000035813 1 1 1 60 1 229461912 229461930 ACCCAGTTCAAGCTATTCC 57 229461953 229461972 CACCACAGCATAGAAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994,ENSRNOT00000039354 1 2 2 80 19 25841438 25841457 GTTTCCAGGACTGCTTTGTG 60 25841028 25841395 CAGTTGCAACAGGAGTCTG 59 NA Rattus norvegicus 81 LOC102556447 ENSRNOG00000036958 ENSRNOT00000055537 1 1 1 80 2 238407383 238436974 ACTGAGAAGCAAACAGATTGAC 59 238407324 238407343 TTGGCTGAAATCTGATGCAC 59 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000091687 2 1 2 86 1 80218958 80218976 TCAACTAGCACAAGCACCA 60 80217054 80218910 ATCCGTTTCTGTTTCTTCTCG 59 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 2 2 2 83 3 22642328 22643276 AAAGAAGACTACTACAGGCGG 60 22643321 22643339 ACGCATCACCATCTCTGAG 60 NA Rattus norvegicus 81 Pcdh8 ENSRNOG00000013101 ENSRNOT00000017599 1 1 1 60 15 62197829 62197848 CATCAACCACATGCAGAGTG 60 62197396 62197414 ATGGCCTAGGATCTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911148 ENSRNOG00000046157 ENSRNOT00000065898 1 1 1 111 1 147081450 147081468 TAACATCCAAGCCCAGGTC 59 147081627 147081645 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr246 ENSRNOG00000050375 ENSRNOT00000050651 1 1 1 60 1 172265315 172265333 GATTCCCATGTTGAACCCT 57 172265356 172265375 CATAGCCTCCTTTACCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 1 2 2 80 10 43875439 43878840 TGGCCAAGGAATTAGGGAG 59 43878884 43878902 ACGTTCTTCAAGTTGCAGG 59 NA Rattus norvegicus 81 Fut4 ENSRNOG00000009157 ENSRNOT00000012176 2 1 1 60 8 13261763 13261781 GAACTTCGAATCACCCTCC 58 13261721 13261740 ATTGAAGAGGTCCTTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 1 1 1 62 2 115362914 115363888 GCAGAAAGACAAGAAGCCT 58 115363914 115363932 ACTGGATGAGTAAGGTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Wdr73 ENSRNOG00000010664 ENSRNOT00000032294 3 1 1 81 1 142714069 142718414 AGACAACGATGTCATTGAAGC 59 142714008 142714026 GAAGATAGAGACCCGAGGC 59 NA Rattus norvegicus 81 B3gntl1 ENSRNOG00000049724 ENSRNOT00000071141 3 1 1 80 10 110807919 110814347 GTCCTTGAGATGACCATCTG 58 110807858 110807876 GATGGTGAAGGACTTCCAG 58 NA Rattus norvegicus 81 Tmem35 ENSRNOG00000001506 ENSRNOT00000002058 2 1 1 80 X 105134886 105143808 ACAGTGAGATGAAACGTGC 59 105143850 105143870 GGAGAATGGAATTAATGCCCA 59 NA Rattus norvegicus 81 Oit3 ENSRNOG00000046365 ENSRNOT00000075682 3 1 1 80 20 29017311 29020351 AAGACTTGCGAAGACATCG 58 29017249 29017267 ATAACCCTTCTCAGACCCA 57 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524,ENSRNOT00000044095 2 2 2 80 13 34250286 34250307 TTTAGAACAAACTGCTCGAGAG 59 34249226 34250248 CTCTTTGGAATGTCCTGAAACC 60 NA Rattus norvegicus 81 Pdcd5 ENSRNOG00000013250 ENSRNOT00000017708 1 1 1 80 1 91175064 91175725 GGCCAGGTTAAGTAACTTAGC 59 91175004 91175024 TACCGTGCCATCTGTATAAGG 60 NA Rattus norvegicus 81 Kcnj14 ENSRNOG00000021056 ENSRNOT00000028591 3 1 1 158 1 101808395 101808413 GTCTTCAGTGAGAACGCAG 59 101806970 101806988 GTCCAGTGGGATGTACTCG 60 NA DesignNoJunction Rattus norvegicus 81 Olr411 ENSRNOG00000007911 ENSRNOT00000010360 2 1 1 60 3 20852937 20852961 CTCTATTATGGGTCCATTATTGGTC 59 20852901 20852922 TGTTGATTGTACTGTTGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amer1 ENSRNOG00000007984 ENSRNOT00000051132 3 1 1 181 X 64702320 64702338 GAGGTTCCAGCTCAGATCC 60 64689935 64689957 CTGTTTCATCCTGTTGAATCTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp800 ENSRNOG00000007662 ENSRNOT00000010223 2 1 1 80 4 55521367 55521387 TTGTTACAGCAACCAGTACAG 59 55509960 55521327 AAGTTGTTTGGTTCCTGATCG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183,ENSRNOT00000049391 1 2 2 80 17 63836371 63838112 TACAAGAGAAGGTGAATGAGGG 60 63836312 63836330 CTGTGTTGTGGAGAAGCAG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183,ENSRNOT00000049391 3 2 2 80 17 63829679 63829698 AGGAGATCAAGAAGCTAGCG 59 63827765 63829636 CCTCACAGTTGTAGCACCA 60 NA Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000079918 2 1 2 80 12 2590181 2590199 ACAGAACAAGGGACTCCAG 59 2590036 2590139 ACTTCCTCCTTACTCTTGCAC 60 NA Rattus norvegicus 81 Cpped1 ENSRNOG00000015118 ENSRNOT00000045047 3 1 1 84 10 3735507 3773588 TTCACCAGAGCAGGTATCC 59 3773635 3773654 CCACCATGTCAAGATTCTGG 59 NA Rattus norvegicus 81 Apip ENSRNOG00000007446 ENSRNOT00000009797 2 1 1 80 3 92991446 92992174 TACACCATGAGAGGAGCAG 59 92992218 92992236 CTGTCCTGGAAACAGAAGG 58 NA Rattus norvegicus 81 AABR07054370.1 ENSRNOG00000046585 ENSRNOT00000072917 1 1 1 80 3 150188564 150188584 GCAAGAAACAAGAGTTTCTGG 58 150188626 150206682 TTCTCTTGTCTTTGGTGCC 58 NA Rattus norvegicus 81 Reep4 ENSRNOG00000011373 ENSRNOT00000015169 3 1 1 80 15 52237279 52237298 GAAACCATGCTCAGTTTCGG 60 52237340 52237510 ACCTTGACTCTTGGTAGCAG 60 NA Rattus norvegicus 81 Akr1b1 ENSRNOG00000009513 ENSRNOT00000012879 1 1 1 82 4 61713812 61713831 CCAACTTCAACCCTCTTCAG 59 61713352 61713768 GCACTCGATCTGGTTAACAG 59 NA Rattus norvegicus 81 Olr1456 ENSRNOG00000046792 ENSRNOT00000052167 2 1 1 60 10 44730378 44730398 GGCTTCATTCTCTTAGGACTC 58 44730420 44730438 CCAGCACAAAGAGGAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx36 ENSRNOG00000014599 ENSRNOT00000019824 1 1 1 80 2 152814577 152814598 ATCGAAAGAGGAATAGGGTCTG 60 152813325 152814537 CCTCTCAGCAACTGAAATGG 59 NA Rattus norvegicus 81 Musk ENSRNOG00000033567 ENSRNOT00000048457 1 1 1 80 5 75463015 75463035 GCTACCAATAAGCATGGAGAG 59 75463076 75475461 CTGTGATTTGCTGAAAGCTG 58 NA Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 2 2 2 80 6 10961896 10961916 AATGCTTCAGCCATTTACGAC 60 10961957 10962525 TTCTAGGCACTCAGAAAGCA 59 NA Rattus norvegicus 81 Afap1l1 ENSRNOG00000019403 ENSRNOT00000026495 1 1 1 80 18 57080279 57080866 CGAAGAGCTCCTACAATGAC 58 57080218 57080236 GTCCCTTCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Nadk2 ENSRNOG00000054157 ENSRNOT00000083799 3 1 1 81 2 58489130 58489148 TTCAGGACCTCAGCTTCTG 59 58489190 58493315 ATAGTAAGAAGCCCTGGATGAC 60 NA Rattus norvegicus 81 Tshr ENSRNOG00000003972 ENSRNOT00000005671 3 1 1 80 6 115268625 115268644 CAGACAACCCTTACATGACG 59 115268684 115273004 TGTATAGTTTCAGGGTCAAGGT 59 NA Rattus norvegicus 81 Tceal1 ENSRNOG00000002387 ENSRNOT00000044372 3 1 1 94 X 107370505 107370523 TTTGGTCGAGAAGGAAAGC 58 107371315 107371334 GCTCTGTGGTTGTTCTTCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561282 ENSRNOG00000043071 ENSRNOT00000066837 3 1 1 118 3 177164470 177165900 CTGAGAGGCCTATGGTACC 59 177165982 177166000 GAGTACCTCCTGGACACTG 59 NA InUTR Rattus norvegicus 81 Vsig2 ENSRNOG00000033490 ENSRNOT00000042679 2 1 1 80 8 40011990 40012879 GGTTCAAGATGAAGTGTCTGG 59 40012921 40012939 CTGGCTACACATCGGTAGG 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 3 2 2 81 19 44143515 44143533 ACATGTGAATGGTGACCTG 58 44141135 44143472 CACCGATACGTTGTATCTGAC 59 NA Rattus norvegicus 81 Tars2 ENSRNOG00000057194 ENSRNOT00000087052 1 1 1 80 2 197868273 197868291 GCCTTGGAAGAGTTTGGAG 59 197863690 197868231 GAGGTGCACATCAATCTTAGG 59 NA Rattus norvegicus 81 Nrros ENSRNOG00000001752 ENSRNOT00000050364 3 1 1 108 11 71884243 71884261 GATTGTGGAATGGAGGAGC 58 71887708 71887727 TACTGAAGCGAGGTTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Sec61a1 ENSRNOG00000013743 ENSRNOT00000018454 3 1 1 80 4 120457124 120457142 TCATCTCCCAGATGCTGTC 59 120456820 120457080 CAGATGACGTATCCGACCA 59 NA Rattus norvegicus 81 Prrc1 ENSRNOG00000016433 ENSRNOT00000022017 1 1 1 80 18 52441145 52441166 CTGGATAAGACCAAGCATTCTG 59 52441204 52443477 GCCTCCAGATTTGATATACGGA 60 NA Rattus norvegicus 81 Rnf207 ENSRNOG00000033722 ENSRNOT00000046552 3 1 1 80 5 169490649 169490944 GAGATTTATGAAGCCCAGCTC 59 169490589 169490607 GATCTGCTTGGTGATGGTG 59 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340,ENSRNOT00000030324 3 2 2 81 1 219379109 219379202 CTAGTCCCAGGAGTCTACCA 60 219379246 219379264 AGGGCAGGTAGAAGAACTG 59 NA Rattus norvegicus 81 AABR07012277.1 ENSRNOG00000037341 ENSRNOT00000056498 2 1 1 198 2 192148038 192148056 CTCCTCCTGTATGCCTACC 59 192148218 192148236 CAAGGTGGAGTTTGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_0539.1 ENSRNOG00000053425 ENSRNOT00000089519 1 1 1 60 4 54121327 54121345 CCTAGAATGGGTGCAATGG 58 54121366 54121387 AAGAGTTACAACATGTCACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wac ENSRNOG00000018698 ENSRNOT00000058852 1 1 1 80 17 60897980 60897998 CCTGAACCCTACATTTGCG 59 60897912 60897938 TGAAGTAATGGAGGTATCGACTG 60 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 2 2 2 80 1 187803944 187804827 CAACACAGATATTCTGAGCATACTC 60 187803888 187803907 CTCATTCAGCTTCACCTGGA 60 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 2 3 3 80 8 71046691 71048848 GAAAGCAAGGATGGTTTGAC 58 71046630 71046648 GTCTTCCATGATGAAGGCT 57 NA Rattus norvegicus 81 Mrto4 ENSRNOG00000017979 ENSRNOT00000024326 1 1 1 80 5 157815871 157815891 GCTGTCTGACTATGAAGTGTG 59 157815699 157815830 TCATACCCAAACAGCTTCAG 58 NA Rattus norvegicus 81 LOC100911204 ENSRNOG00000026378 ENSRNOT00000041727 2 1 1 86 3 112539157 112540208 GAAGAGAATGACAATACACAGAGG 59 112541444 112541463 TTTGAGGTCCTGAAGAGGAC 59 NA Rattus norvegicus 81 LOC681198 ENSRNOG00000040020 ENSRNOT00000061522 1 1 1 89 15 5667219 5667238 CACAAGATGCAGAAGGAGAG 58 5539923 5667169 AGACTCAAAGTTGTTCCTGTC 58 NA Rattus norvegicus 81 Cib4 ENSRNOG00000009898 ENSRNOT00000013123 3 1 1 81 6 27301832 27301851 TCTGGACAATGACAACATGC 59 27301892 27303432 CCGAAAGGAGTTCATGAAATCC 60 NA Rattus norvegicus 81 Tcp11 ENSRNOG00000000499 ENSRNOT00000045044 2 1 1 81 20 7647795 7647926 ATGAAGAGTTTCCTGAGACCC 60 7647734 7647753 AGGATGGTTAGCTGGTTCTG 60 NA Rattus norvegicus 81 Rlbp1 ENSRNOG00000016897 ENSRNOT00000022962 3 1 1 80 1 141098795 141098991 TTGCTACAGAGGGTCTTCG 59 141098733 141098753 GTCAGCAGGCAAGATATTCTC 59 NA Rattus norvegicus 81 Idh1 ENSRNOG00000015020 ENSRNOT00000020322 3 1 1 80 9 71884500 71884518 GCATTGAGACCATTGAGGC 59 71883002 71884456 CAGAACGCTGTACATTGGG 59 NA Rattus norvegicus 81 Ppp1r13l ENSRNOG00000025350 ENSRNOT00000047105 3 1 1 81 1 80279983 80281258 GGAGTTCCCTCTAGGATGTC 59 80281300 80281320 CTATCTTCTGTAGGGACCCTC 59 NA Rattus norvegicus 81 Gstt3 ENSRNOG00000001242 ENSRNOT00000036518 1 1 1 84 20 13822763 13822781 CGTGTGGATGAGTACCTGG 60 13822829 13824510 ACTGACAGGTCACCTTCTG 59 NA Rattus norvegicus 81 Spag16 ENSRNOG00000042609 ENSRNOT00000068450 1 1 1 80 9 77605546 77772375 TCAGGTAGGGTATTGAGAAGG 58 77833166 77833185 CAGTTTGTGAATTTGCCCAG 58 NA Rattus norvegicus 81 Tmem87a ENSRNOG00000008455 ENSRNOT00000067836 2 1 1 80 3 112140988 112141008 GAGGAACATCGTAAAGCTCTC 59 112139934 112140948 ATGAACACTATAGATGCTGCC 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602,ENSRNOT00000041872,ENSRNOT00000007109 3 4 4 87 6 99166537 99166555 GAGTGGTATCTCCTCCCAG 58 99165215 99166486 GCCCTTGTTACTGATGTGC 59 NA Rattus norvegicus 81 Dpep2 ENSRNOG00000023303 ENSRNOT00000034722 2 1 1 80 19 37967154 37967172 GTGATGGTGACCTTTGCTG 59 37965424 37967111 GTGATCAAAGTGATCTGCCA 58 NA Rattus norvegicus 81 Sgol2 ENSRNOG00000027035 ENSRNOT00000029526 3 1 1 80 9 64917338 64917356 TCTTCACACCAGATGAGGA 58 64917397 64922731 TCTTCTCATCTTGCTTCTAAGG 58 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000039278 ENSRNOT00000088375 2 1 1 60 5 61123765 61123784 TAAGGAGCATCTGCCTACTG 59 61123724 61123742 ACAGATGAAGTCGTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt6 ENSRNOG00000014471 ENSRNOT00000046850 1 1 1 60 1 163148917 163148935 TCTCCTCTCGCAAAGACAC 60 163145437 163145455 CTTGGGAGTCTTGGACCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kdelr3 ENSRNOG00000013577 ENSRNOT00000087888 1 1 1 80 7 120757403 120758105 GCACCAATGGAGATTCTCTG 59 120758146 120758166 CTTGCTGATCATGAAGAGCTG 60 NA Rattus norvegicus 81 Kdelr3 ENSRNOG00000013577 ENSRNOT00000087888 3 1 1 80 7 120758281 120758299 ATCTCAGTGGTGTCTGGAG 58 120758341 120759588 TCCTTTAAGGACTTTGGTCAC 58 NA Rattus norvegicus 81 Mmp19 ENSRNOG00000006778 ENSRNOT00000008909 1 1 1 80 7 3216606 3216624 GCTGGCCTTCTTACTTCCT 59 3216668 3217116 AACAGGTAATCCACCACCG 60 NA Rattus norvegicus 81 Olr136 ENSRNOG00000024877 ENSRNOT00000034108 1 1 1 60 1 169129061 169129079 ACTGTTAAGGAGACTGCCC 59 169129100 169129121 GTGGAGACAATAGGAATGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msantd4 ENSRNOG00000022245 ENSRNOT00000034482 2 1 1 99 8 1510794 1510812 AGAATGTGGCAGATTTCCG 58 1510874 1511486 TCCTCAATCTCAAATTCGGG 58 NA Rattus norvegicus 81 Rn60_X_0594.1 ENSRNOG00000051096 ENSRNOT00000076001 3 1 1 61 X 58512590 58512610 CTATTCCACTGGTCTATCTGC 58 58512633 58512651 TTTCTGGAATTCCCATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inmt ENSRNOG00000011250 ENSRNOT00000015316 3 1 1 82 4 85384625 85384643 CTGAAGAAGGAGCCAGGAG 60 85382537 85384579 TGCCATCTGCTTCTGTCTC 60 NA Rattus norvegicus 81 Zpbp ENSRNOG00000027801 ENSRNOT00000039182 3 1 1 90 14 91491360 91491379 TTAAGTCTGAATGCCATCGT 57 91469015 91491310 TCAGTGTCTATAGATGCAACTG 58 NA Rattus norvegicus 81 Rpl37a ENSRNOG00000023385 ENSRNOT00000030761 2 1 1 89 9 80003823 80003841 AAGATGAAGAGACGAGCCG 60 80003891 80004889 AGAAGTGGTATTGTAGGTCCAG 59 NA Rattus norvegicus 81 Napa ENSRNOG00000001494 ENSRNOT00000002044 2 1 1 80 1 78008234 78008724 CAGACATGGGCAGATTCAC 59 78008767 78008786 CTACATCCACCAGTTCTGTC 58 NA Rattus norvegicus 81 Pipox ENSRNOG00000008798 ENSRNOT00000012154 2 1 1 80 10 64961676 64961697 AAGTAGGGCTCTTAGACAAGAC 59 64961737 64962047 GCTGACGAATTACATGCTGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 1 2 2 80 12 11505220 11505240 GAGACAGAATAGGTGGTGGAG 60 11505278 11506924 CTGAGTCTTCATATACCGTTCCT 60 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000050886 3 1 2 61 9 71778300 71778318 CAACTGAAACCTCCCATCC 58 71778170 71778278 CCTCATAGAAGGTGATCTTCCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Cep97 ENSRNOG00000001609 ENSRNOT00000002191 2 1 1 80 11 47161689 47162419 TGAGCAAACAGAGGTTTCAC 59 47162461 47162480 TTTCAACAGCAGCAATAGGA 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 2 2 2 80 17 66256286 66258074 GAAACTATGAGGAAGCCCTG 58 66256225 66256245 CGTCATCCATGTTGATATCCA 58 NA Rattus norvegicus 81 RGD1562953 ENSRNOG00000033843 ENSRNOT00000041410 2 1 1 60 1 282064663 282064681 CCTGGGTCCTAAGTCTGTG 59 282064704 282064723 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3566 ENSRNOG00000046071 ENSRNOT00000071480 1 1 1 60 17 21353625 21353646 GGGAAATGTAGTTCAAAGTTCG 58 21353664 21353685 GTGGTAGTTCATTGTTAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0866.4 ENSRNOG00000030988 ENSRNOT00000050532 1 1 1 60 14 85902546 85902566 CAGAGGTGCTTAGACTTTGTG 59 85902506 85902524 TGGTCATCGGAAGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp20 ENSRNOG00000021896 ENSRNOT00000033306 2 1 1 81 8 5842773 5842791 TGATGTGGCTAACTACCGC 60 5842830 5845996 TGTGTACTTAGAGACTCTGTATGTC 60 NA Rattus norvegicus 81 AABR07055539.1 ENSRNOG00000058125 ENSRNOT00000034346 2 1 1 80 7 5573635 5573656 CATCATGAATCAGAAAGTCTGC 58 5573574 5573594 AACATGAGCAATGGGATGG 58 NA Rattus norvegicus 81 Foxa3 ENSRNOG00000014256 ENSRNOT00000019219 2 1 1 74 1 79930117 79930135 CTCAGTGAAGATGGAGGCC 60 79922629 79930079 ACTGGAGAATACACCTCGC 59 NA DesignRelaxed Rattus norvegicus 81 Pgls ENSRNOG00000018326 ENSRNOT00000024827 3 1 1 62 16 20023815 20023833 CTATGCCAGGAAACTGAGG 58 20024316 20024334 ATCAGCAGGTCAAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953,ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 1 4 4 128 4 85597914 85597932 TCAACTTCCTGCCTGACAG 60 85599377 85601225 AAATCTCCGTCCTCACCTC 59 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616,ENSRNOT00000010910 3 2 2 80 13 113913453 113915191 GTCTGTGAGAGTGATTTCCC 58 113913392 113913410 TTCAACATGCTGTCCTGTG 58 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000048949 ENSRNOT00000071270 2 1 1 82 2 234452426 234476258 GTCTTCAGTATATTCGGTGCTC 59 234476301 234476319 CAAACTGACTGCTTCAGGC 60 NA Rattus norvegicus 81 RGD1562699 ENSRNOG00000042716 ENSRNOT00000065939 1 1 1 86 18 59818605 59819021 CATCCCTTCCTGGAGAGTC 59 59818537 59818555 AATCGTGTAATCGCAGAGC 58 NA Rattus norvegicus 81 Rarb ENSRNOG00000024061 ENSRNOT00000033048 3 1 1 80 15 10185759 10185778 AGGTCACTAGGAATCGATGC 59 10185819 10246740 CATTCCTGACAGACTCTTTGG 59 NA Rattus norvegicus 81 Actr1a ENSRNOG00000019725 ENSRNOT00000026792 2 1 1 80 1 266132381 266134440 CTGCTTTCCAAACTATGTGGG 60 266132321 266132339 GGGCCAATGAAGATGTCAC 59 NA Rattus norvegicus 81 Rn60_14_1004.2 ENSRNOG00000060606 ENSRNOT00000082964 1 1 1 60 14 100173359 100173380 AATGACAGATACAACGAGATCC 58 100173401 100173419 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc18 ENSRNOG00000058156 ENSRNOT00000081470 2 1 1 80 5 151837977 151850289 GGAGAAGCAGATCGATAACAC 59 151837917 151837937 ATTTGTCCGTTGATCATCACC 59 NA Rattus norvegicus 81 March4 ENSRNOG00000016472 ENSRNOT00000022076 1 1 1 93 9 79802927 79807849 AATCCTCTACAGTGGCAGG 59 79802852 79802870 TACTGGCGATGAGGAAGAG 59 NA Rattus norvegicus 81 Clec3a ENSRNOG00000012238 ENSRNOT00000016307 3 1 1 81 19 46738532 46740831 TGCAGACAGTCTGTCTTCG 60 46740875 46740894 GCTTCGTGGTAATGCTTGAG 60 NA Rattus norvegicus 81 Ovca2 ENSRNOG00000003111 ENSRNOT00000004150 1 1 1 144 10 62020419 62020437 CTTCCGTGAGAAGACTGGG 60 62020065 62020083 TTGCTCCTCTGGAGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Pla2g2a ENSRNOG00000016945 ENSRNOT00000022827 1 1 1 84 5 157284237 157284255 CTGGAGAAACGTGGATGTG 59 157284303 157284892 CCTGGTTTGTAGAGCAGGA 59 NA Rattus norvegicus 81 RGD1563307 ENSRNOG00000028984 ENSRNOT00000030832 2 1 1 60 1 89645973 89645992 ATGCTGACGACTTAGGAGAG 59 89645932 89645951 TAGTACTGCAAGGGATTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 2 2 2 80 10 62694591 62694610 TGGGTCATATCTTCACCACG 60 62694134 62694549 GTTCTTCGAAGTTGTTCGGG 60 NA Rattus norvegicus 81 Gpr63 ENSRNOG00000007675 ENSRNOT00000010081 1 1 1 80 5 39329620 39329639 GATGCTTGTTAGTGCTGTGG 60 39329681 39368761 TCTGTTTGCTGTTTCCACAG 59 NA InUTR Rattus norvegicus 81 Slc38a10 ENSRNOG00000004604 ENSRNOT00000006225 1 1 1 80 10 109330283 109333548 TCAAACAGTGTGGCATTGTC 59 109330222 109330241 CCAAGAACATGCAAGACTGG 60 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000072158 1 1 2 61 1 212872547 212872571 GTCATTTATTCTCTGAGGAACAAGG 60 212872584 212872732 GGACATACAAATAACTTTCTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 2 2 2 80 1 47644894 47647592 AGAGTTGTTGCATCAAGACAG 59 47647633 47647652 GGAGACTTGCTTGTAATCCC 58 NA Rattus norvegicus 81 Hadha ENSRNOG00000024629 ENSRNOT00000038649 2 1 1 80 6 27603168 27603186 CAACGACCAAATCAGGAGC 59 27603230 27604060 GCCAGCATGTTGATGTCAG 60 NA Rattus norvegicus 81 Gpr142 ENSRNOG00000024446 ENSRNOT00000035963 1 1 1 126 10 103349223 103349241 CAATACGACAGTGTGGACG 59 103349331 103350865 TAGTCAGGACGTTGACAGG 59 NA Rattus norvegicus 81 Uba2-ps1 ENSRNOG00000052785 ENSRNOT00000091820 1 1 1 89 13 93884316 93884337 ACGACTTCCTGGACTACAC 59 93884390 93884408 GGGTGTCACCAACTACCTC 60 NA Rattus norvegicus 81 Uba2-ps1 ENSRNOG00000052785 ENSRNOT00000091820 3 1 1 97 13 93884245 93884265 AGAGACAGAAGCTAATAACCC 57 93884324 93884345 TCAGCAAAGTGTAGTCCAG 57 NA Rattus norvegicus 81 Mkx ENSRNOG00000018938 ENSRNOT00000025623 3 1 1 83 17 60541823 60548564 TAGTGCAGGTGTCAAATTGG 59 60548608 60548628 TTAAGGCCCAACTTAAATCCG 59 NA Rattus norvegicus 81 Krt71 ENSRNOG00000049495 ENSRNOT00000068533 3 1 1 82 7 143349774 143350184 CTGCTGAAGAAGGATGTGGA 60 143349711 143349729 TTGATGTCCTGGTCCATGG 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 3 2 2 80 12 17254616 17257977 GCATTCAAGAAGGATGTGC 57 17258021 17258039 ATCTGGGATGTCACCTCTC 58 NA Rattus norvegicus 81 Pm20d2 ENSRNOG00000007755 ENSRNOT00000060914 3 1 1 81 5 48427769 48427787 AAGAGCTCCACGTTCTGAC 60 48425434 48427727 TTAATTTCTACTGTGCAGCCTG 59 NA Rattus norvegicus 81 Dhtkd1 ENSRNOG00000023587 ENSRNOT00000065978 2 1 1 80 17 76336302 76336323 AGAATGGAACCAATCTTGACTG 59 76336362 76337627 GACGAACATTGAAACCTTGAG 58 NA Rattus norvegicus 81 Snrpf ENSRNOG00000005556 ENSRNOT00000007351 1 1 1 87 7 34483365 34483385 TGATGGTGAAACTTAAGTGGG 58 34479359 34483316 TCTGTATTTGCAAGCTGCA 58 NA Rattus norvegicus 81 Gorasp2 ENSRNOG00000055853 ENSRNOT00000088097 3 1 1 80 3 56982915 56983575 ATACCGTCATGAATGAGTCTG 58 56983615 56983635 TGTACACGTAGAGCTTAAGAG 57 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644,ENSRNOT00000083956 3 2 3 80 7 143323425 143323554 GTTGAAGAAGGATGTGGACG 59 143323364 143323383 TTGATCTCGTCCATTAGGGC 60 NA Rattus norvegicus 81 Ppp3r1 ENSRNOG00000043210 ENSRNOT00000067846 1 1 1 80 14 100356722 100357098 AAGTTGAGGTTCGCTTTCC 58 100357142 100357160 CTTCAACACCTGGAAGAGC 59 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 1 2 2 80 X 118455764 118456313 GATAGCAGATGAAGGAAGCC 58 118455703 118455721 GAGCAGACCAAATACTGCC 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 2 2 3 83 X 65068707 65068727 AAGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Marcksl1 ENSRNOG00000009113 ENSRNOT00000012663 3 1 1 60 5 147715471 147715489 AGAAATCGGAAGGAGGGTG 59 147715513 147715531 CTTGCTCTTCCTCTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam9 ENSRNOG00000046915 ENSRNOT00000071271 1 1 1 60 1 78659460 78659481 GGAGTCCTCTTCTCTACTTCTC 59 78659501 78661845 GCAGGTTAAGAAGGAAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ceacam9 ENSRNOG00000046915 ENSRNOT00000071271 3 1 1 60 1 78659460 78659481 GGAGTCCTCTTCTCTACTTCTC 59 78659501 78661845 GCAGGTTAAGAAGGAAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Kif24 ENSRNOG00000012735 ENSRNOT00000035541 3 1 1 82 5 57797317 57797336 AAGATAGCAAGCATGTGGTG 59 57792827 57797274 TAAGATCACCTGTAGGAGGAG 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490,ENSRNOT00000086297 2 2 2 80 4 116712254 116712273 CAGTGTCGACTACAACAGAG 58 116712088 116712213 ACTGTACATCTCTAGGACTGG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 1 1 4 80 14 85872089 85872108 GAGTTCCGGATATTGGAGGA 59 85872146 85873670 TAGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 3 1 4 81 14 85872087 85872105 GCGAGTTCCGGATATTGGA 60 85872146 85873669 AGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000090532 3 1 4 80 14 85881936 85883266 GCTTCCCAAATACTCTGCA 58 85883310 85883328 TTCATCCTAAACGAGGCAG 57 NA Rattus norvegicus 81 Olr1244 ENSRNOG00000061646 ENSRNOT00000087099 2 1 1 60 4 1584362 1584385 TATGTAGGATGTATGACCCAACTC 60 1584403 1584422 CACAGCATTCACTAACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccndbp1 ENSRNOG00000011379 ENSRNOT00000015472 2 1 1 81 3 112952410 112952428 GGATCTGTGAGCAAGTCCA 59 112952473 112954062 AGGGTGATTCCCTGATCCT 60 NA Rattus norvegicus 81 Defb23 ENSRNOG00000023477 ENSRNOT00000032030 2 1 1 88 3 147928626 147932366 GGTGGAATCAGAATTTATGGTGG 60 147928560 147928578 GTACCTGGGTTTCCTCAGG 59 NA Rattus norvegicus 81 Acsbg2 ENSRNOG00000045947 ENSRNOT00000074555 2 1 1 80 9 10197521 10197542 AGATCTATGGGATGACTGAGTG 59 10197581 10199342 CTTTGCCACAACTCAGAACTC 60 NA Rattus norvegicus 81 Acsbg2 ENSRNOG00000045947 ENSRNOT00000074555 3 1 1 80 9 10190393 10192952 ATGACAACATCACATGGACG 59 10192994 10193013 CTATCGTGTCCTGCTTTCCT 60 NA Rattus norvegicus 81 Rgs19 ENSRNOG00000016547 ENSRNOT00000022451 1 1 1 105 3 177197530 177197638 CTGTGAAGTCTGCACTCCA 60 177197443 177197461 GAATGCCCGGAATACACTG 59 NA Rattus norvegicus 81 Zer1 ENSRNOG00000025832 ENSRNOT00000035002 3 1 1 80 3 8665587 8666260 TGTCTACCCTGACAAGTACTG 59 8665527 8665548 GTAACCATCTTGATCAAGTCCC 59 NA Rattus norvegicus 81 Gnai1 ENSRNOG00000057096 ENSRNOT00000091004 2 1 1 80 4 13479437 13480987 GAAGAAATGAACCGGATGCA 59 13481029 13481048 GATGGATGTGTCCGTAAACC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 1 2 2 80 17 5439631 5439651 GACCTTCTTTCTGCCATTCAC 60 5436748 5439591 AATTGGATGGTCTCCTTTGGT 60 NA Rattus norvegicus 81 Procr ENSRNOG00000019330 ENSRNOT00000055254 2 1 1 80 3 151287562 151287581 TACCTGTCCCAGTTCAACAG 59 151287622 151288437 GCTAACAGTCAGAGGAAAGAC 59 NA Rattus norvegicus 81 Aak1 ENSRNOG00000018317 ENSRNOT00000043082 1 1 1 80 4 118788424 118788443 TTCTAACCCTACTGCTGACC 59 118788481 118790209 CTATCTTCTGCAGCTTTATGAGTG 60 NA Rattus norvegicus 81 Eya4 ENSRNOG00000016627 ENSRNOT00000022362 3 1 1 81 1 23600086 23602386 AGAACAATGTCGGAGGTCTC 60 23602429 23602448 TCTGTTAGGCCTTCGATCTC 59 NA Rattus norvegicus 81 Ddr2 ENSRNOG00000002881 ENSRNOT00000003901 1 1 1 80 13 88342783 88343093 GGAAACAGGTGCTTGATGG 59 88342721 88342742 CAAATCTAGCTACAATGGGTGG 59 NA Rattus norvegicus 81 Rpap3 ENSRNOG00000053405 ENSRNOT00000083926 1 1 1 80 7 139175986 139178339 GAGGCCAAGCAAGATTTCG 60 139175924 139175945 TTTAATTCTGGAAAGCTCGGTC 59 NA Rattus norvegicus 81 Vrtn ENSRNOG00000048378 ENSRNOT00000073962 3 1 1 195 6 108365106 108365126 CTAGCCTGTTACCTTCTACCT 58 108365319 108365337 CATTCAACAGGCTTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135,ENSRNOT00000091273 1 2 2 80 3 153403191 153409420 CAGATGTCAAGAAAGCGTG 57 153409464 153409482 ATTGGGCAGCATAGAAGAG 57 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135,ENSRNOT00000091273 3 2 2 80 3 153433082 153435044 CTCACCAGACATTTGTTCGAC 60 153435084 153435104 CATTCTTGTTATCCGGCTCAG 59 NA Rattus norvegicus 81 RGD1565512 ENSRNOG00000027392 ENSRNOT00000036178 1 1 1 80 3 3732873 3732891 GATCTCCAATGCGGAAGTG 59 3729460 3732830 ATAGACAGAAGCTGTCTGGA 58 NA Rattus norvegicus 81 RGD1562515 ENSRNOG00000024604 ENSRNOT00000007636 3 1 1 60 4 101393063 101393085 GGAACTTTATGACTGGCTTTACC 60 101393025 101393043 CCAATGGGAAACGAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360,ENSRNOT00000066549 1 2 2 80 5 151107320 151112101 GACGATCGAAAGAAGGTGG 58 151107258 151107276 TCTGGTCTTCTGAAGGACG 59 NA Rattus norvegicus 81 Mttp ENSRNOG00000010655 ENSRNOT00000014631 3 1 1 80 2 243387350 243387371 AGTCGGTTATGATCATCATTGG 58 243382807 243387309 CTTCAACCACTGCCTTGAG 59 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 3 1 1 82 14 20468891 20474556 TTTCGTCCCTATTCTCCCTC 59 20468828 20468846 CTTTGGAGCCATACACAGG 58 NA Rattus norvegicus 81 Abcd4 ENSRNOG00000011964 ENSRNOT00000016040 1 1 1 80 6 108327665 108327686 CTTTCCTTCTTGGTCATCACAG 59 108327484 108327625 TAGATCACCAGTTGCTCCAG 59 NA Rattus norvegicus 81 Abcd4 ENSRNOG00000011964 ENSRNOT00000016040 3 1 1 80 6 108318314 108318465 GAGCATGAAAGGCTCAGTG 59 108318252 108318270 GTGAAGAACGGCTTCTGAG 59 NA Rattus norvegicus 81 Olr40 ENSRNOG00000018541 ENSRNOT00000025003 3 1 1 84 1 167605480 167605498 TTTCTACCTGTTGCTTCCG 58 167605285 167605432 TAACCTTACCAGGTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl28 ENSRNOG00000042720 ENSRNOT00000027662 3 1 1 81 10 15495904 15495922 AGTCCCAACAGGAACTGTG 60 15495966 15496722 ACCCTATTGGAGAGCTTGTC 59 NA Rattus norvegicus 81 Gng10 ENSRNOG00000025040 ENSRNOT00000020707 2 1 1 136 5 76182232 76185944 TGGAGAGGATCAAGGTCTC 58 76186044 76186062 AAGTAAAGCACAGGACCTG 57 NA Rattus norvegicus 81 Coq6 ENSRNOG00000011164 ENSRNOT00000014913 3 1 1 80 6 108084013 108084625 CAGACCAAGCTGTTGATTGG 60 108084668 108084686 GTTCCAGCCAACATTCTGG 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 3 2 2 82 19 39070889 39070907 CACCATTGAGATGCTTCGG 59 39070950 39071888 CGTATTTGTTGAGGATTTGGAC 58 NA Rattus norvegicus 81 Ift20 ENSRNOG00000008891 ENSRNOT00000011795 3 1 1 82 10 65807940 65807962 TACCTCCTGATTGACACTATCAC 60 65808004 65808147 ATGTCCTTGGCCATAGCTG 60 NA Rattus norvegicus 81 Lcat ENSRNOG00000019573 ENSRNOT00000026585 2 1 1 97 19 37915658 37915755 ATTGATAACACCAGGGTTGTC 58 37915581 37915599 GAGTAGGTCTTGCCAAAGC 59 NA Rattus norvegicus 81 Chst14 ENSRNOG00000045997 ENSRNOT00000073587 1 1 1 60 3 110735228 110735248 CCCAGAAAGTCTACATTACCA 57 110735270 110735288 TAGCACATCTTGAAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ei24 ENSRNOG00000030391 ENSRNOT00000046590 1 1 1 80 8 39257201 39257477 TCCTCCTACATTATCAGTGGC 59 39257141 39257160 AGGAGTCTTTGCTTCATTGG 58 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 2 2 2 80 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452656 243453747 CTTCAACAGGATCTTTATCTCCTG 59 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 1 1 1 80 19 26024167 26024188 TGTAATTCTCACTTCTCGAGCT 59 26024229 26024970 CCGGAGTACAGGTCATCTC 59 NA Rattus norvegicus 81 Olr588 ENSRNOG00000005793 ENSRNOT00000007603 2 1 1 60 3 75937378 75937400 CCATTAATGAGTGGCTACTTTCC 60 75937417 75937438 ATGAAGAAACAGATGACCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 3 2 2 82 15 4891259 4893410 AATGAAAGAGGGCTTACCTG 58 4893570 4893590 GAGCAGCTTCATTAAGAACTG 57 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 3 3 3 80 4 23118591 23118612 AAGGCATTTAACACCATCTCAG 59 23117928 23118552 ATTTCCACAGACAAACACCTG 59 NA Rattus norvegicus 81 Il13ra1 ENSRNOG00000013170 ENSRNOT00000017746 2 1 1 80 X 122755923 122760885 CTCTTTAGAGGTTGAAGAGGAC 58 122761197 122761218 GGAGATATGAAACAACTTGCAC 58 NA Rattus norvegicus 81 Mpnd ENSRNOG00000048282 ENSRNOT00000074075 3 1 1 80 9 11058645 11058930 TCCTCTTGGACTTCCACTG 59 11058583 11058603 TCTGATTATTGATGTCCCAGC 58 NA Rattus norvegicus 81 RGD1564865 ENSRNOG00000038361 ENSRNOT00000058413 2 1 1 80 17 69488589 69488608 CAGGCAGCTAGAGATGATCC 60 69488647 69489461 AGATAAGGGTGACATTCTACCTG 60 NA Rattus norvegicus 81 LOC100909752 ENSRNOG00000060381 ENSRNOT00000088385 3 1 1 80 5 62920909 62920929 GGATATCCCTCTGGAAATGGT 59 62921079 62923781 CCTTTGGGTCCCATAGGTC 60 NA Rattus norvegicus 81 Zfp358 ENSRNOG00000000974 ENSRNOT00000001289 3 1 1 239 12 2046498 2046516 CGAACTACAAGTCCCAGCA 60 2048782 2048800 ATCCTGGAAGTAGAACCGC 59 NA DesignNoJunction Rattus norvegicus 81 Pafah1b2 ENSRNOG00000057102 ENSRNOT00000082508 3 1 1 80 8 50260658 50264439 TTGTACTGGGTCTGTTACCTC 59 50260598 50260616 CCTTGAGAAGCTGGTTCAC 59 NA Rattus norvegicus 81 Sntg2 ENSRNOG00000004928 ENSRNOT00000066904 3 1 1 81 6 49254935 49254953 AAAGAGGTGCTGACGATCC 60 49218555 49254893 TTCTCAGAAGATGCACATTAGC 59 NA Rattus norvegicus 81 Eda2r ENSRNOG00000013018 ENSRNOT00000017429 3 1 1 80 X 66565594 66567132 TCTTCTGAGGTTCAGTGTACC 59 66565534 66565552 AAGTGTGGCTTCCTTAGGA 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000000916 ENSRNOT00000001219 2 1 1 80 12 7253519 7253537 ATGACAAGGATCTGGTGGA 58 7253578 7253945 GATCTGCTATATCATCCCAGTG 58 NA Rattus norvegicus 81 Pex1 ENSRNOG00000025991 ENSRNOT00000038136 2 1 1 80 4 27668965 27670420 CTTTATTAGTATTCAGGGACCAGAG 59 27668909 27668930 CTGATGAAGACATCTCGAACAG 59 NA Rattus norvegicus 81 Nudcd3 ENSRNOG00000056148 ENSRNOT00000083191 1 1 1 104 14 86333275 86333293 TTTCTCTACCGCAAGACCG 60 86326735 86333209 TTTAAAGACCTGCAACACCAG 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094,ENSRNOT00000038132 1 2 2 80 9 65921807 65922468 CATGTATGGACACAGGATGC 59 65921746 65921765 ACTGCAAGTACAGCATTCAC 59 NA Rattus norvegicus 81 LOC100361746 ENSRNOG00000028116 ENSRNOT00000038955 3 1 1 80 10 71489000 71489632 GGGATTTGGTAATAAGAGTTCCTC 59 71488943 71488963 TAGCTATCGTCTGATTTCGGA 59 NA Rattus norvegicus 81 Tp53i13 ENSRNOG00000022615 ENSRNOT00000010691 1 1 1 92 10 62651346 62653584 GAGACAAGGACAGGCTGAG 60 62653640 62653658 CACAAATGGGCCAAGACAG 59 NA Rattus norvegicus 81 Calcb ENSRNOG00000011074 ENSRNOT00000014764 2 1 1 82 1 184273108 184273126 TATGAACAGAAGGCCAGGA 58 184273172 184275125 GAAATGACACTGGAGGAGG 58 NA Rattus norvegicus 81 Rn60_13_0836.1 ENSRNOG00000051271 ENSRNOT00000076141 2 1 1 80 13 78619989 78620204 TCTGTCTGAGAACTCATTTGGT 60 78620245 78620263 TCCAGGAAATGCTTCCCAG 60 NA Rattus norvegicus 81 Tbc1d13 ENSRNOG00000015970 ENSRNOT00000021431 1 1 1 80 3 8713754 8713773 GGCATCACCTACAAGATGGA 60 8713816 8715028 CTGTTCTTGCAGCTTCAGG 59 NA Rattus norvegicus 81 Tbc1d13 ENSRNOG00000015970 ENSRNOT00000021431 2 1 1 80 3 8713818 8715030 TGAAGCTGCAAGAACAGAG 58 8715074 8715092 ACAAGAACTCCTGGGACAG 59 NA Rattus norvegicus 81 Tmem67 ENSRNOG00000016187 ENSRNOT00000021839 3 1 1 80 5 25705267 25705288 GATTATGTTTCAGCAACACAGG 58 25703349 25705226 TTGATGACATGCCAAGCTC 59 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 1 2 2 80 5 135413322 135415564 ACAGTCAGCTAAGTCATCTACAG 60 135415598 135415622 CTTATTCCAAATCTACCTTCTCCAC 59 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 2 1 1 99 5 169507809 169510110 TTTGAGCAGTTCCTCCAGG 60 169510173 169510191 CAGTGATCTTGCTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Thrsp ENSRNOG00000012404 ENSRNOT00000016540 1 1 1 80 1 162385144 162385162 GAGGTGACGCAGAAATACC 58 162381991 162385103 CTCTCGTGTAAAGTGATCTTCC 59 NA InUTR Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 1 2 2 80 3 3819965 3820332 ATGTTAACTTTGAAGGAGCCC 59 3819905 3819926 TCTTATTGATGCTTGGATGCTC 59 NA Rattus norvegicus 81 Gpc2 ENSRNOG00000001367 ENSRNOT00000001849 3 1 1 81 12 19596817 19597526 CTCCGCCTACAGATAACCC 59 19596754 19596772 CGCTGACCACATTTCTTCC 59 NA Rattus norvegicus 81 Lair1 ENSRNOG00000027733 ENSRNOT00000036413 2 1 1 80 1 73867274 73867294 TTTCCTCCTTTGTCTTTCCCT 59 73867332 73867448 CTCTTATTGTTTGGAAGTCCCTG 60 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 2 1 1 80 14 86527425 86527701 TATTCAGAACTCAGACTACGAGG 59 86527741 86527759 TGTAGGTCAGGCTTCACAG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 3 4 5 82 X 71311062 71311526 CTCCACTGAGAGCATTCCA 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 1 2 2 80 6 18900541 18900561 AATTCCTGCCCATATTGACTC 58 18900603 18912486 TCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Pmch ENSRNOG00000004632 ENSRNOT00000006174 2 1 1 83 7 28655438 28655456 TTGCTCCTTCTCTGGAAGG 59 28655503 28655841 AGCCTGTGTTCTTTGTGGT 60 NA Rattus norvegicus 81 Tspan4 ENSRNOG00000029810 ENSRNOT00000049448 3 1 1 80 1 214470358 214471390 CCTACTGCTCACTTTCTTTGTG 60 214471430 214471449 CTGTAGGCAAAGAAGAGCAC 59 NA Rattus norvegicus 81 Olr259 ENSRNOG00000009791 ENSRNOT00000012974 2 1 1 60 1 172567733 172567753 ATCATCCTGTGCATTTACCTG 59 172567693 172567715 TGATGAGAAGGATTGTACTGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr259 ENSRNOG00000009791 ENSRNOT00000012974 3 1 1 60 1 172567439 172567460 TAACCCACTGCTTTATTCAACC 59 172567400 172567421 TCCTACAATCAACTGCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr279 ENSRNOG00000046162 ENSRNOT00000047040 1 1 1 60 1 172942969 172942993 GTTGAACCCTATCATTTATAGCCTC 60 172942933 172942952 CTGTCTCTTCATAGCACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1-ps1 ENSRNOG00000046611 ENSRNOT00000072327 3 1 1 60 14 21877798 21877819 CAGAAGTTAGTGGTTAGTTGGG 59 21877759 21877777 TCTCCATCTCGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp383 ENSRNOG00000046305 ENSRNOT00000072556 1 1 1 97 1 88207031 88212239 AACATAAGAAACAGGTGGCG 59 88212299 88212317 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103,ENSRNOT00000089408 2 2 2 80 18 63242252 63242271 TCCATTGAGAAGGAAACTCC 57 63240154 63242210 CCTAGGAACAAGAGAACGTG 58 NA Rattus norvegicus 81 Ap2s1 ENSRNOG00000015865 ENSRNOT00000021310 1 1 1 80 1 78676248 78676266 AAGTTGATCGAGGAAGTGC 58 78676310 78681276 CTTGAAGTTCCGGAACTCC 58 NA Rattus norvegicus 81 Ush1c ENSRNOG00000021149 ENSRNOT00000067392 2 1 1 80 1 102237901 102238028 ATCAAAGTGAGACACATCGG 58 102237672 102237691 GAACTGATCCACATACTGCC 59 NA Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 1 1 1 70 1 220417142 220417403 TTCAATCGAATCAGCCAGG 58 220417437 220417455 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Pde6a ENSRNOG00000017816 ENSRNOT00000024171 3 1 1 80 18 56611371 56611389 AACAAGGCAGATGAACTCC 58 56611431 56613173 CCGGGAGAATTCCTTATAGAC 58 NA Rattus norvegicus 81 Pikfyve ENSRNOG00000015158 ENSRNOT00000020447 3 1 1 80 9 71982408 71991276 CCATTCCATTTCCTTTCGATCC 60 71991315 71991335 CTTTCTCACAGACAGCAATGG 60 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 2 2 2 80 8 71919303 71923102 TCATCACCTACATCCTTCTAAGTG 60 71923141 71923159 CAGCAGTGATGTTTGCCAG 60 NA Rattus norvegicus 81 Pik3r2 ENSRNOG00000019228 ENSRNOT00000026210 3 1 1 80 16 20422614 20422715 AAGTACCAGCAAGACCAGG 59 20422759 20422777 GTACTGCTGGTGGTAGACC 60 NA Rattus norvegicus 81 Aldh6a1 ENSRNOG00000011419 ENSRNOT00000015545 1 1 1 82 6 108152063 108152276 GTCAATGCAGGAGATCAGC 59 108151999 108152019 TCAATCAGATTGCAGACTCTC 58 NA Rattus norvegicus 81 Sf3b4 ENSRNOG00000021181 ENSRNOT00000028758 1 1 1 88 2 198313128 198313146 ATGGGAGCTCTTTCTCCAG 59 198313198 198313660 CAAAGCCATAGCCTTGGTG 59 NA Rattus norvegicus 81 Cldn1 ENSRNOG00000001926 ENSRNOT00000002640 1 1 1 80 11 77815610 77823966 TCTGAATAGTACTTTGCAGGC 58 77824008 77824026 GTGGACACAAAGATTGCGA 59 NA Rattus norvegicus 81 Fgd6 ENSRNOG00000054515 ENSRNOT00000077666 3 1 1 80 7 35056889 35058973 GCTGCAGAAACTAGATCACC 59 35059013 35059034 GAAGATAAGGCACTTGAAGGAG 59 NA Rattus norvegicus 81 Mrpl43 ENSRNOG00000014890 ENSRNOT00000020020 2 1 1 155 1 264755900 264756030 TGGCCGAATACCTTAACGG 60 264755763 264755781 CCTGGATGCTAGGGTTGTC 60 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000043917 3 1 2 80 11 60809831 60810594 CTATGCCAGAAGTTAACACTACAG 59 60809774 60809794 TTGTCAGTGGACTAGAAGGAC 59 NA Rattus norvegicus 81 Mpv17l2 ENSRNOG00000019394 ENSRNOT00000026271 1 1 1 80 16 20434379 20434545 ACTTCTACAAGGCCGACTG 59 20434588 20434607 TGACTCGGAAATGAGAAGGG 60 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000077291 1 1 4 60 20 2501335 2502702 GAAGCCATTCCATCTGCAC 59 2502724 2502744 CTTGGAGAAGACGTTACTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Lurap1l ENSRNOG00000033740 ENSRNOT00000041374 2 1 1 81 5 98469441 98514393 CAGGAGATGGTGAACCTCAG 60 98514437 98514455 TGATGGACTCGATGCTCTC 59 NA Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 2 1 1 80 7 75328480 75333674 TCACTTCCCTTGGAACTCTG 59 75328419 75328441 TGTACTGAAATCTCAGCTCTAGG 60 NA Rattus norvegicus 81 Drd5 ENSRNOG00000005338 ENSRNOT00000007074 3 1 1 60 14 77220976 77220995 ATATTCGTCTGGTTTGGCTG 58 77220935 77220956 CATTAAAGGCATAGATGATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 1 1 1 106 5 173640823 173641569 AGAACCAGGACTGTGACAG 59 173641633 173641657 CCAGATTCTACTTCATTCTTCTGAG 59 NA InUTR Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 3 2 2 80 20 27718060 27720735 TGATGAACCAAGGGTACCT 58 27717998 27718016 GCAAGACCAGAGACTTCTC 58 NA Rattus norvegicus 81 Psapl1 ENSRNOG00000006845 ENSRNOT00000009193 1 1 1 60 14 79713580 79713599 CTGTCCAGAATCAGTGTCAG 58 79713539 79713557 ACATAGTTCTCGCAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 3 2 2 91 7 97899360 97899378 AAGGGATGTCCAAGAAGGC 60 97897456 97899305 CTTTGCTTTCCAGGTCCAC 59 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 2 2 2 80 7 137982436 137983663 ACCTTCAACTCAAAGACGG 58 137982374 137982392 GTAGATTGGCAGGACAGAC 58 NA Rattus norvegicus 81 Arhgap42 ENSRNOG00000026821 ENSRNOT00000031492 2 1 1 80 8 7245731 7245751 TGTACTTACGACAAAGGAAGC 58 7243701 7245690 AACAAGGCCATTCATCTTCC 59 NA Rattus norvegicus 81 Rhox5 ENSRNOG00000046548 ENSRNOT00000071376 2 1 1 80 X 123913098 123913116 TATCAGCCGCTTACTCTGC 60 123913160 123913330 TCTGCTTTCACATCACCCA 59 NA Rattus norvegicus 81 Kbtbd2 ENSRNOG00000013809 ENSRNOT00000018442 3 1 1 80 4 87100034 87100054 AGTGTTAATTGTTGAGGGCAC 59 87092959 87099993 AACATGGCCCTGAAATAGGA 59 NA Rattus norvegicus 81 Olr343 ENSRNOG00000029027 ENSRNOT00000049665 1 1 1 60 1 229804511 229804534 TGTCTTCCTTCTCATCTATCTCAG 59 229804474 229804493 AATCAACCCTACCATTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 1 2 2 80 5 137670822 137671379 AAATGAGTTTCTACCGCCAG 58 137671422 137671440 TCTTCGTAGGGACTTGGAG 58 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 3 2 2 80 5 137672721 137672741 AACTGAGGTCCTTCAGAAGAG 59 137672783 137673034 TCAGAGAAGCCTTTCTGGT 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000081095,ENSRNOT00000025723 2 2 5 84 1 100088388 100088408 TCATTGGTACAACTTTCTGCG 59 100088449 100089332 CGATAATTCTTGCTATAGCAGTGG 60 NA Rattus norvegicus 81 Dcx ENSRNOG00000047712 ENSRNOT00000074322 1 1 1 80 X 115122224 115122243 TGATGTGTTCATTGCTTGTG 57 115120842 115122183 ACTCTGCATTCATTCTCATCC 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 1 2 2 80 2 173472403 173475439 GAGATAACATCCACAGTTTCAG 57 173472344 173472362 GACATCGGTATTACCAGCA 57 NA Rattus norvegicus 81 Stxbp2 ENSRNOG00000000994 ENSRNOT00000001322 2 1 1 80 12 2182125 2182144 GAAGACATCAACAAACGGAG 57 2182187 2182972 CTGAACCGACTTCTCTGTG 58 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 3 2 2 149 5 160571604 160575267 GAAGACAGCCAGGAAGAGG 60 160571473 160571493 AGTTAGCGATTCATAGGAGGG 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015058 2 1 2 80 4 132157655 132160025 GAGGAAGAAGGAGGTTCCA 58 132157593 132157613 GTCCTTAAACATGCCAAACCT 59 NA Rattus norvegicus 81 RGD1563334 ENSRNOG00000050089 ENSRNOT00000071779 1 1 1 88 5 162599652 162599670 CCAAGACAACCTCCTCTGG 60 162597219 162599601 GTTGTGGTAACAATCCAGGC 60 NA Rattus norvegicus 81 Casc1 ENSRNOG00000027630 ENSRNOT00000030680 2 1 1 80 4 179463522 179463541 TTAGCTTGTGGGAGGAAGAG 59 179461398 179463481 TTTCAATCAGGGACAGAACCA 60 NA Rattus norvegicus 81 Ccni ENSRNOG00000002125 ENSRNOT00000002924 3 1 1 80 14 16345483 16345501 GTTGGAAAGGGCAATCTCC 59 16345541 16356467 GGAGAAACATTCTGGTTTGTAGG 60 NA Rattus norvegicus 81 Spink7 ENSRNOG00000032873 ENSRNOT00000040936 2 1 1 82 18 57918184 57918202 AAACATCCCAGTTTGTGGA 57 57916690 57918141 TCCCATTACTTCTCAAGATCTC 57 NA Rattus norvegicus 81 Rfpl4a ENSRNOG00000015743 ENSRNOT00000021077 2 1 1 96 1 72280367 72281628 GACTAAATGAGGCACTGACC 58 72281687 72281705 CAGTTCAGGTACACAGGGT 59 NA InUTR Rattus norvegicus 81 Selenbp1 ENSRNOG00000053812 ENSRNOT00000088465 1 1 1 80 2 196107516 196107534 AGTGGAGAAGGTGATCCAG 58 196107356 196107472 ATGTCGGTGATCAAACCAG 58 NA Rattus norvegicus 81 LOC367975 ENSRNOG00000047100 ENSRNOT00000071436 1 1 1 80 X 124158480 124158498 ACCTTACACTCTTGTGCCA 59 124157652 124158436 TCATGGTGGCAATTGTTGG 59 NA InUTR Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481,ENSRNOT00000013353 1 2 2 80 7 117130846 117130865 GATCAAGTCTTGTACGCTGG 59 117130702 117130803 TGGGCCTTCTCATATTCGA 58 NA Rattus norvegicus 81 Cdkn3 ENSRNOG00000009785 ENSRNOT00000012985 3 1 1 81 15 23561893 23562795 GATCTTGTCTTGTAGCTGCT 58 23562839 23562857 TCTCGAAGGCTGTCTATGG 59 NA Rattus norvegicus 81 Ccdc121 ENSRNOG00000022717 ENSRNOT00000036629 3 1 1 60 13 99820871 99820890 AAACGGGTAAAGAGGAAGAC 58 99820830 99820849 TTTCTTGGATTTGCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl13a ENSRNOG00000055454 ENSRNOT00000085068 3 1 1 80 X 105025712 105025732 TATGAGCAACATCTCAAGCTC 58 105025772 105035141 ACTCCTCTGGTAGATAAGCTG 59 NA Rattus norvegicus 81 Npas4 ENSRNOG00000020009 ENSRNOT00000027119 2 1 1 80 1 220264742 220264760 CTTGTGTTCACAGCTGAGG 59 220264507 220264699 CAGATCCACCATAGAATGGC 58 NA Rattus norvegicus 81 Cgrrf1 ENSRNOG00000010178 ENSRNOT00000013912 2 1 1 80 15 23627864 23627885 AATGAGACAAGTGAAGAATCCG 59 23627925 23633042 GTCAAGGTTACACCTGTTGC 60 NA Rattus norvegicus 81 Fga ENSRNOG00000024848 ENSRNOT00000064091 1 1 1 80 2 182010316 182010335 GCAACAGATTCAGGTTCTGC 60 182010375 182011039 TTGATATCAATGTCCACCTCCA 59 NA Rattus norvegicus 81 LOC100912534 ENSRNOG00000001748 ENSRNOT00000002382 1 1 1 80 11 82859834 82859937 AGACTTAGGTGACAAGTTCCG 60 82859774 82859794 GGGTTGTATTCACCATCATCC 59 NA Rattus norvegicus 81 Sntn ENSRNOG00000027383 ENSRNOT00000039347 2 1 1 60 15 14501956 14501976 CCAAGAATCTGCTTCAAACCC 60 14498631 14498649 TTTGGCTTGGTTTCCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dnajb9 ENSRNOG00000004006 ENSRNOT00000005363 1 1 1 85 6 64168229 64168247 TAGCCATGAAGTACCACCC 59 64167431 64168183 GAGTGTTTCATATGCTTCTGCA 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 1 3 3 88 7 123134431 123134449 TCCTCACAGTGAAAGGTGG 59 123134501 123135291 AATTGTTGCCATGCCAGTG 60 NA Rattus norvegicus 81 Olr537 ENSRNOG00000034047 ENSRNOT00000047002 1 1 1 60 3 74606834 74606855 TTGGATTTCTCCTACTCATCAG 57 74606795 74606816 GCCCTACCAAGTAGTTTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fh ENSRNOG00000003653 ENSRNOT00000004917 3 1 1 80 13 93669831 93669852 AAGTATTATGGTGCTCAGACTG 58 93667095 93669790 GACTGGGATTGGCATTCTC 58 NA Rattus norvegicus 81 Kctd6 ENSRNOG00000007817 ENSRNOT00000010303 3 1 1 80 15 18485946 18487950 CTGGAGCTATATGATGACTGAC 58 18485887 18485905 CGTGTCAACGTGGTAAGAG 59 NA Rattus norvegicus 81 Rn60_X_0735.2 ENSRNOG00000051269 ENSRNOT00000076628 1 1 1 60 X 72611638 72611658 AGAAACAGAAAGTAAAGGCCG 59 72611680 72611698 CCTTGGGCATGAACTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000071707,ENSRNOT00000073435 3 2 2 80 11 82871941 82875453 TTCTTTGCACAAGACCCAC 59 82875497 82875515 CCAATGAGTCTGCCAATGC 60 NA Rattus norvegicus 81 Prss32 ENSRNOG00000029223 ENSRNOT00000071525 1 1 1 80 10 13197684 13199131 CCACTGCTTTAACCAGGAC 59 13199175 13199193 TCATTGTCCTCAGGGTAGG 58 NA Rattus norvegicus 81 Rxfp1 ENSRNOG00000024120 ENSRNOT00000033107 3 1 1 80 2 178479361 178520027 GGACGATATTTCACACTTGGA 58 178479301 178479319 GCACTTACTGATGTTCCCG 59 NA Rattus norvegicus 81 Fbxo6 ENSRNOG00000009217 ENSRNOT00000012301 1 1 1 80 5 164959609 164959633 ACTGGAAGATCTTCTATATCCTGTG 60 164957651 164959573 ATGATCTCAGGTTCTCTTCGG 59 NA Rattus norvegicus 81 Map3k7 ENSRNOG00000005724 ENSRNOT00000007654 2 1 1 80 5 47203024 47204548 GTTGTATAATGTGCTGCACG 58 47204591 47204609 GAACACTGTAGACACCAGC 58 NA Rattus norvegicus 81 Tp53bp1 ENSRNOG00000013837 ENSRNOT00000019025 3 1 1 80 3 113230578 113230866 CCCGGTGTTGGATATTATGTC 59 113230518 113230538 AGATGTTCACTGAATGAGCTG 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395,ENSRNOT00000088029,ENSRNOT00000080406 2 3 4 81 20 3121981 3122000 GTGCTATGGCCATCTTAGGT 60 3122041 3122417 TCATAATCTCTGTCTCCTCCCT 60 NA Rattus norvegicus 81 Olr551 ENSRNOG00000050825 ENSRNOT00000049273 1 1 1 60 3 74990483 74990501 TTGCCATCCTGAGAATCCG 60 74990441 74990459 GAGGCACAAGTTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il19 ENSRNOG00000025571 ENSRNOT00000035044 2 1 1 80 13 47666910 47670090 GAGCATTAAGCCTGTAGATGTG 59 47666851 47666869 TGATGGTCCTTGAACACCC 60 NA Rattus norvegicus 81 Acox2 ENSRNOG00000007378 ENSRNOT00000010260 2 1 1 80 15 18452274 18452292 CCATCTCGAGAAGCTAGCC 60 18452334 18452545 CCATCAAGGACTCTGTTAGCA 60 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000068134 1 1 2 80 14 14382871 14382889 TTGACCTTCTGGACATCCG 59 14374249 14382830 CAGAAGTATCTGATTGGATGGC 59 NA Rattus norvegicus 81 Pcsk1 ENSRNOG00000011107 ENSRNOT00000015185 2 1 1 80 2 91485157 91493635 ATGATGATCGTGTGATATGGG 58 91485097 91485115 TCAATGCTGAGTCTCTTGG 57 NA Rattus norvegicus 81 Mapk3 ENSRNOG00000053583 ENSRNOT00000087625 1 1 1 80 1 198197426 198197444 TACCTACAGTCTCTGCCCT 59 198197488 198197663 CAGGTCAAGAGCTTTGGAG 58 NA Rattus norvegicus 81 Vom1r81 ENSRNOG00000048807 ENSRNOT00000044913 2 1 1 60 4 88048579 88048597 ATCAGTCCCAGTACCTCAC 58 88048619 88048639 AAGTCAGGTACGTCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 3 2 2 80 7 143163542 143163561 CAAGGCTCAGTATGATGACG 59 143163283 143163500 TTCATCTCCTCACACTTGGT 59 NA Rattus norvegicus 81 Fkbp14 ENSRNOG00000009886 ENSRNOT00000013205 2 1 1 80 4 84767985 84768003 GGATCTGATGTTGGTCCAC 58 84764851 84767944 CCATTGTTATGTTTGTGAGTGG 58 NA Rattus norvegicus 81 Olr1579 ENSRNOG00000049212 ENSRNOT00000045429 1 1 1 60 13 91638592 91638611 CTCCAATTTCCAAGAGCACC 59 91638551 91638574 CAGGATGTATAGGGTAAAGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021930.1 ENSRNOG00000037928 ENSRNOT00000029787 3 1 1 80 13 99346047 99346066 TAGAGAAGTTCTCCACCTGG 58 99346109 99346229 GTTCCTCTGTTTCCAGGGA 59 NA Rattus norvegicus 81 Scnn1b ENSRNOG00000030981 ENSRNOT00000067138 2 1 1 80 1 191875849 191875869 AACTGCTACATCTTCAACTGG 58 191875908 191877622 CAACTTGAGACCAAATTCAGTC 58 NA Rattus norvegicus 81 Prkd2 ENSRNOG00000016434 ENSRNOT00000022360 3 1 1 80 1 78775810 78775910 GCTCATCAATGGAGATGTGC 60 78775952 78775971 TCCAACTCATCTGAGAGGGA 60 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368,ENSRNOT00000080352 1 2 2 80 1 48552172 48553749 CCCACGTACCCAAATACTC 58 48552110 48552128 CATCATTGTCTGGGTTCCT 57 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 3 2 2 65 2 232129926 232135437 CACTGGAAGACTCTCAGGC 60 232135466 232135484 CGTCTCTTCTGTATCAGCG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Szrd1 ENSRNOG00000009183 ENSRNOT00000045226 3 1 1 100 5 159643874 159645428 AAAGGAGAGCAGGAAATCCA 59 159643793 159643811 TCTTGAGGATGCGGATCTG 59 NA Rattus norvegicus 81 AABR07002775.1 ENSRNOG00000048489 ENSRNOT00000072734 2 1 1 60 1 84758979 84758997 TGAATGTAAGCAGTGTGGG 58 84759020 84759039 ATCGTAGTGTCGTAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nono ENSRNOG00000003689 ENSRNOT00000004911 1 1 1 80 X 71337247 71338079 GAGGCAGGATTTGATGAGAC 59 71338122 71338140 TGCTTTCGTTTCTGAACCT 58 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 3 1 1 60 4 161277719 161277739 GTACAGCTTAACTTCACAGGA 58 161277679 161277697 GAACATTCCACAGTCGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a8 ENSRNOG00000006367 ENSRNOT00000008613 3 1 1 80 7 29455385 29455405 CTGTACTCCAGATACCATGAC 57 29455445 29457462 CACCAAATAAGGCATAAGCTG 58 NA Rattus norvegicus 81 Olr577 ENSRNOG00000021658 ENSRNOT00000033519 3 1 1 60 3 75733747 75733766 TGTGACATCTGCTACTCCTC 59 75733706 75733727 CTTTAGACAAGAAATCAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr8 ENSRNOG00000015280 ENSRNOT00000020750 1 1 1 80 16 6052080 6053193 CTAAGGGAAGGACTAAATAAACCTG 59 6053231 6053249 AGACCATATTGCCTGGTCC 59 NA Rattus norvegicus 81 Wdr12 ENSRNOG00000017340 ENSRNOT00000023463 1 1 1 80 9 66864622 66864640 ATTTCCTCATCAAGGGCCA 59 66862980 66864581 CAACCTCTTCCGATGAAATGTC 60 NA Rattus norvegicus 81 Tfpi2 ENSRNOG00000010513 ENSRNOT00000013989 3 1 1 80 4 28952676 28952694 TGAGACTGTGGAATCTGCC 59 28952392 28952634 CTAAGTTATTCCCTTGGGCAG 59 NA Rattus norvegicus 81 Mir196b ENSRNOG00000049258 ENSRNOT00000071717 3 1 1 60 4 82199105 82199124 AGGTAGTTTCCTGTTGTTGG 58 82199064 82199083 GTAATGAAGGCAGTGTCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 2 2 2 80 1 191917425 191917443 AGATGTGCCAAATTCACCA 58 191911850 191917384 AGACACATACTTGGTAAAGAGG 58 NA Rattus norvegicus 81 Olr542 ENSRNOG00000050876 ENSRNOT00000046167 3 1 1 60 3 75088444 75088465 GGTCTTCTCTGGTATAATTGCT 58 75088405 75088425 GTGGCTATAGGATACCATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd1 ENSRNOG00000010771 ENSRNOT00000015092 2 1 1 80 10 13931242 13931260 GTCCCACAACCTACTTCAG 58 13931302 13931436 TTATTGCTTAAGTCCAGCTCC 58 NA Rattus norvegicus 81 Shroom3 ENSRNOG00000002208 ENSRNOT00000003001 2 1 1 81 14 16623941 16625553 GAAGAAAGGAGTTCTCTGAATGAG 59 16623883 16623901 CCAGGTTCTCCTTGAGCTC 60 NA Rattus norvegicus 81 LOC690082 ENSRNOG00000047724 ENSRNOT00000023181 3 1 1 113 1 146968006 146968024 AGTAACATCCAAGCCCAGG 59 146967827 146967845 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Coro1a ENSRNOG00000019430 ENSRNOT00000026496 3 1 1 80 1 198125531 198125643 TGTTGTGGCTGAGAAGGAG 60 198125469 198125491 GTTAGAATCTTCCCTTCTGACAC 59 NA Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 2 2 2 81 10 43749039 43751495 GAAACTACACAGCGATGCC 59 43751540 43751558 GTGGATGACAAGGTTGCTG 59 NA Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 1 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981794 CCCACAGAACATAACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56400019 56400267 CTTGGCCTCTAAGAACTGTG 58 56400309 56400328 CAGATCTTGACCAACTTGCC 59 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 3 2 2 104 4 117597678 117600448 AATGCCAATGTGATTGTCG 57 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Rn60_5_1641.1 ENSRNOG00000051225 ENSRNOT00000076898 3 1 1 60 5 160288735 160288755 CTCTATGTCAAGCAGCATCAC 59 160288777 160288795 GTGAGATGGATTCTGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr12 ENSRNOG00000042455 ENSRNOT00000065640 3 1 1 100 5 146792335 146792702 GAGGAGGAAAGAAAGGTGGA 59 146792254 146792272 TTAGGAAAGCCTTCCCTCC 59 NA Rattus norvegicus 81 RT1-S2 ENSRNOG00000029001 ENSRNOT00000042882 3 1 1 82 20 3156438 3156588 GAGATGGGAGTCTCCTCCA 60 3156633 3156652 CTATGATGGTCACAGCTCCA 59 NA Rattus norvegicus 81 Plekhg3 ENSRNOG00000006570 ENSRNOT00000008573 2 1 1 80 6 99641564 99641582 AGCTTCTCAGAGACCTGGA 60 99641625 99641891 CAAACTCTTGGCTCCTTTCC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000058007,ENSRNOT00000082401 2 4 4 80 8 70136627 70156900 AGGATTCATGGGAGAGGTG 59 70156939 70156962 CTACAGCTACATACAGATGAACAG 59 NA Rattus norvegicus 81 Pan2 ENSRNOG00000032441 ENSRNOT00000050792 1 1 1 80 7 2733032 2733147 TCTTAATGAGGAAGAAGCAGAG 58 2733187 2733206 ATCCTTGCTACTGACATCTG 57 NA Rattus norvegicus 81 Olr558 ENSRNOG00000048361 ENSRNOT00000071725 2 1 1 60 3 75379793 75379811 GTGATGTCCTATGACCGCT 59 75379832 75379853 TCATAACCAGAGGATAATGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm3 ENSRNOG00000016770 ENSRNOT00000022603 1 1 1 81 1 78845100 78845119 ATGGCCAGAAAGATGAAGGA 59 78844900 78845056 AGCCATTCCCATCCTTGTC 60 NA Rattus norvegicus 81 Mir7a-2 ENSRNOG00000035477 ENSRNOT00000053600 2 1 1 82 1 140576407 140576426 CCCTGTCTGGAAGACTAGTG 59 140576470 140576489 GATGTGACCAACACCATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 2 3 3 80 1 247257808 247260251 CGTCAATTCTGGGAAGTCTC 58 247260294 247260312 AGTTCAGCACTCAGGAAGG 59 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 1 2 2 80 12 18161176 18161196 CTGAGCTGATCTTCAATTTGG 57 18161238 18163389 TTTGGAAATCTGGGATGCT 57 NA Rattus norvegicus 81 Scnm1 ENSRNOG00000021092 ENSRNOT00000028639 3 1 1 83 2 196300571 196300864 CTTACCCTCCGAAGCTCTG 60 196300506 196300527 CTCATCAGAGTCAAACTCAACG 60 NA Rattus norvegicus 81 LOC100125368 ENSRNOG00000043289 ENSRNOT00000031481 1 1 1 80 7 10896371 10896390 TTGGATCCTTCCCAGAAGAG 59 10896019 10896333 CAATTTGTAGCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000046227 3 1 2 89 7 118492970 118494185 GATTTGCCAGACAGACTCC 58 118494238 118494256 CCAAAGTCAGGAATCTGCC 59 NA Rattus norvegicus 81 Tppp3 ENSRNOG00000016890 ENSRNOT00000022863 1 1 1 82 19 37425125 37425259 TCTTCTCCAAAGTCAAGGCA 59 37425062 37425080 CTTTGTTGCCAGCTCTTCC 60 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 2 2 2 80 19 39386429 39389316 CAATTCATGCCAAAGTTCCTG 59 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 RGD1562652 ENSRNOG00000026051 ENSRNOT00000036147 3 1 1 83 20 3138866 3138884 TATTCAAGAGGCACACCCA 59 3138928 3139113 TAGTGTGGGAATCTTGACTCTG 60 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484,ENSRNOT00000060311 3 2 2 80 3 94626695 94626713 AAGGAGACTGTGCTCAAGG 59 94624461 94626652 AATTCGGGACTCCATGATCC 60 NA Rattus norvegicus 81 Calhm3 ENSRNOG00000026086 ENSRNOT00000036202 2 1 1 81 1 266934070 266934089 GACAGTCTGTGTTGATGGTG 59 266932323 266934027 CACATGTACCTGATGATGCC 59 NA Rattus norvegicus 81 Dennd4a ENSRNOG00000011739 ENSRNOT00000016260 2 1 1 80 8 70372661 70372681 GTTCTTCCACTATAGTTCGCC 59 70372721 70374154 GAGTGCTTTCCTCACATTCTC 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 1 2 2 81 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000079905 2 1 2 80 5 159739076 159739604 TGAGACCACTGGTATTCAGAC 59 159739644 159739664 AAACGGAACATAACAACACGG 60 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 1 2 2 83 1 2005393 2005614 CCCAGATACCTTCACTCGA 58 2005328 2005349 CTTTGGTTAAGCAGTCAATGTC 58 NA Rattus norvegicus 81 LOC100909594 ENSRNOG00000046558 ENSRNOT00000074363 3 1 1 62 3 159095915 159095933 CTTCTAGTGACAGGAGCCA 58 159096419 159096437 AACTTCTTCCGACTGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Rgag1 ENSRNOG00000049853 ENSRNOT00000074676 2 1 1 61 X 114377869 114377887 GGCCATGGAGAATGAACTG 59 114378506 114378524 GTTTGGGAACATGCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC102557415 ENSRNOG00000030626 ENSRNOT00000066317 2 1 1 158 1 215450569 215450587 TTCAGGATGTGGGTCTTCC 59 215450338 215450423 TAGATCTTGCATTGCGAGC 58 NA Rattus norvegicus 81 Atl1 ENSRNOG00000005063 ENSRNOT00000046085 2 1 1 80 6 92332315 92332335 TGACAGTCAGTCAACTTTGAG 58 92332374 92334635 AAGTTGTAGACCTGTATTGAGC 58 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000024981,ENSRNOT00000025013 1 2 2 80 19 29691489 29691507 GACAGTAGCAAGGACGGAG 60 29671912 29691446 CTGTTCATACCAGTCCTCCC 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 1 2 2 80 7 123047238 123052959 GTCCAGCACAGAATCATCC 58 123053003 123053021 TTCACATCAACCTCCACAC 58 NA Rattus norvegicus 81 LOC502684 ENSRNOG00000023721 ENSRNOT00000055415 3 1 1 80 3 147909133 147909151 AGACTTCTGCTGAAGACCC 59 147909193 147910331 TTTCAGCTGCTTGATAAGCTC 59 NA Rattus norvegicus 81 Vldlr ENSRNOG00000027491 ENSRNOT00000035814 2 1 1 80 1 245258634 245258655 AGACATCACCAAAGTATGTGAC 59 245258696 245259290 TCGTTGATATGGCACTCCT 59 NA Rattus norvegicus 81 Capza3 ENSRNOG00000008727 ENSRNOT00000011555 2 1 1 60 4 174182209 174182229 ATTGAAGACCACAGCTATGAC 58 174182248 174182269 TCCACTTAGACTTCCAAAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 2 1 3 88 7 42331551 42337818 TCCTGAGAAAGGGAAAGCC 59 42337869 42337888 TTACAAGCGAAATGAGAGCC 59 NA Rattus norvegicus 81 LOC690507 ENSRNOG00000015637 ENSRNOT00000071772 1 1 1 80 3 149810733 149810996 CGTCAAACTCACAAGGTCTG 59 149812139 149812158 GTGACTTCAGCCATAATGCC 59 NA Rattus norvegicus 81 AABR07040617.1 ENSRNOG00000043306 ENSRNOT00000067828 1 1 1 80 X 106231271 106231430 CTTTGACCAAGACTTGATGGA 58 106231472 106231490 ATGATTTGAAGGGCAGCAG 59 NA Rattus norvegicus 81 Srsf2 ENSRNOG00000000248 ENSRNOT00000067739 2 1 1 91 10 105794949 105794967 GAGTCCAAGTCTAGGTCGC 60 105793831 105794895 CTTGCCGATCCATCATTCTC 59 NA InUTR Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 1 2 2 80 6 115582512 115582533 CTATAACCTAGCACAGATGCAC 59 115581641 115582474 ACGTTCTTAAACAACTCCACTG 59 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 2 2 2 80 6 115582512 115582532 TATAACCTAGCACAGATGCAC 58 115581640 115582472 CACGTTCTTAAACAACTCCAC 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 1 4 4 80 12 703327 703346 TTACTTACCCTCCTGGTGTC 59 703388 707378 TTACAACCATCTTTAGCCGC 59 NA Rattus norvegicus 81 Esx1 ENSRNOG00000048011 ENSRNOT00000072739 1 1 1 80 X 107760294 107761431 GAGTTCAGGTTTGGTTTCAG 57 107760233 107760254 CTGGAACCATGTTTCTATATGC 57 NA Rattus norvegicus 81 Esx1 ENSRNOG00000048011 ENSRNOT00000072739 3 1 1 80 X 107760300 107761437 AATCCAGAGTTCAGGTTTGG 58 107760239 107760260 CCATGTTTCTATATGCTTGTGC 58 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 2 1 2 116 15 24327812 24332207 TTCTAACTGGCATCTGTTATGC 59 24332283 24332302 TTTCATGCAGTTAGCTCTGC 59 NA InUTR Rattus norvegicus 81 Gna15 ENSRNOG00000005378 ENSRNOT00000007202 1 1 1 80 7 11068543 11068561 GATTGCCCTCATCTACCTG 57 11068605 11069429 TCCTTCATACGGTTCTCCT 57 NA Rattus norvegicus 81 Gna15 ENSRNOG00000005378 ENSRNOT00000007202 3 1 1 80 7 11068542 11068560 TGATTGCCCTCATCTACCT 58 11068604 11069428 CCTTCATACGGTTCTCCTG 57 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239,ENSRNOT00000079217 3 2 2 69 18 54118296 54118314 CCTTCATGGACCATTGAGG 58 54118346 54121599 TTTCCTTCAGATGTCCAGAG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1566073 ENSRNOG00000028320 ENSRNOT00000034681 3 1 1 132 19 30588245 30588794 TGAGTGTACAAGCAGAGGC 60 30588131 30588149 CGAATCTTCTTCCCGAGCT 60 NA Rattus norvegicus 81 LOC100365556 ENSRNOG00000016910 ENSRNOT00000022755 3 1 1 81 3 12306770 12306789 AGACAACTACAAGCGAACTC 58 12217686 12306731 CAGAAGGTAGATTCCTAGATAAGG 58 NA Rattus norvegicus 81 Cxcr1 ENSRNOG00000048239 ENSRNOT00000090868 2 1 1 60 9 81466822 81466841 GGGTGATCTTTGCTGTTGTG 60 81466781 81466800 AGAACCAGATTGTAGGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415,ENSRNOT00000092086 2 4 4 80 1 154418776 154420856 AAAGTTGCAGAGCAAGTTGG 60 154422339 154422360 TAAAGCATCAAGAAGACTGCTG 59 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601,ENSRNOT00000084628 2 2 2 82 1 53190414 53191760 TATGCCAGAACAGGGAGAG 59 53191806 53191824 AGTTCCGCAAATGGAAGTC 59 NA Rattus norvegicus 81 Mad2l1 ENSRNOG00000005376 ENSRNOT00000007285 3 1 1 83 4 97535886 97535906 GCTCATTCACTACCACAATCC 59 97535948 97536410 CAAATGAACCGTCTCTTCAGTC 60 NA InUTR Rattus norvegicus 81 LOC102553249 ENSRNOG00000045707 ENSRNOT00000075012 3 1 1 80 3 167225452 167225474 TGAATCCTTCTCAGAAGAGTCTC 59 167225083 167225416 CCCAAATGTATCCTATAGCACTG 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000012167 2 1 2 80 15 70256068 70256086 CAACCCAGTATGATGGCAG 58 70253346 70256026 CACTTCTTCAAGGATGCTCTC 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000077663 3 1 4 60 2 182034335 182034354 CATTTGTAGCTCCAATTGGC 58 182034294 182034313 AAACAAACAAGTTGAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga8 ENSRNOG00000016538 ENSRNOT00000022711 2 1 1 80 17 79675479 79675498 GCTGTCTACTACTGTCCCTG 59 79644796 79675436 TTTCCTGTTGTTGGTGGTG 59 NA Rattus norvegicus 81 Tmpo ENSRNOG00000008797 ENSRNOT00000012715 3 1 1 80 7 31853165 31853188 GTAGATGGTGCAGTAATTTCAGAG 60 31852739 31853126 ATTGGCCACTAAGGAGTCG 60 NA Rattus norvegicus 81 Smarca5 ENSRNOG00000018149 ENSRNOT00000024568 2 1 1 80 19 30951432 30952171 ATGCAAAGGGAATGGTATACTC 58 30952210 30952230 TCTCATCTTGTCCATCTTCCC 59 NA Rattus norvegicus 81 Rnmtl1 ENSRNOG00000037238 ENSRNOT00000056278 2 1 1 90 10 64401879 64404289 TTACTCACCAAAGGCTGTG 58 64404343 64404361 CATTGTTCACAATGGGCAC 58 NA Rattus norvegicus 81 Jkamp ENSRNOG00000004751 ENSRNOT00000006321 1 1 1 80 6 94843175 94843193 CACGATGCTTTACAACCCA 59 94843234 94846460 ATGGTGTATAGTGGGTAGACAG 59 NA Rattus norvegicus 81 Jkamp ENSRNOG00000004751 ENSRNOT00000006321 3 1 1 80 6 94843180 94843199 TGCTTTACAACCCAAGTCCA 60 94843241 94846465 ACACGATGGTGTATAGTGGG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 3 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930858 50930878 TTTCAGAAGCTTCTCTGTGGT 60 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 2 2 2 80 4 121647306 121647324 GAATACGGCTGTTGTGGAC 59 121647366 121648079 GAAGGTGTGATACACTTCCAG 59 NA Rattus norvegicus 81 Dpf3 ENSRNOG00000008086 ENSRNOT00000010926 2 1 1 80 6 106724574 106724595 TCCAACATGAACAAGAAGAGTG 59 106721682 106724533 TCCTCCCAAATGAGCAGAG 59 NA Rattus norvegicus 81 Tcp11x2 ENSRNOG00000011034 ENSRNOT00000052009 3 1 1 80 X 106109586 106112111 TGACAAGCAGCCTGATCTC 60 106109524 106109548 CTTGGTAGTGATGTAATAAGCTCTG 60 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 3 1 2 80 9 84412639 84418295 GATCTACACTGTTGTTGGCC 59 84418337 84418356 TGATGCAGCTCATCAATCTG 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646,ENSRNOT00000089750 1 2 2 80 18 44852257 44854167 ATGCATCAGGATTTGCTGG 59 44854210 44854229 ACATAATGCACTGCAGTTCC 59 NA Rattus norvegicus 81 Asic3 ENSRNOG00000008380 ENSRNOT00000011300 3 1 1 81 4 7290478 7290649 AGCAGCAACTGAGTTTCCT 60 7290415 7290433 GGCTCTGGATCAAAGTCGT 60 NA Rattus norvegicus 81 LOC690617 ENSRNOG00000039861 ENSRNOT00000061194 1 1 1 92 7 11216548 11216566 GATACCTCCGCAGTACCTC 59 11216622 11216911 CTGTTGACCACGAACTCCT 60 NA Rattus norvegicus 81 Slc29a4 ENSRNOG00000001115 ENSRNOT00000001477 2 1 1 81 12 13922825 13923465 TAGGATCACCACAGGTTACC 59 13922763 13922781 AGAGAAGAGCTGAAGCCAC 59 NA Rattus norvegicus 81 Olr1374 ENSRNOG00000045802 ENSRNOT00000072967 1 1 1 60 10 12629020 12629038 TCCTCTTCCTGCTCTTCCT 60 12628978 12628997 ATGATGAGCAGATTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 1 2 2 80 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777107 87777127 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Olr540 ENSRNOG00000048820 ENSRNOT00000048376 1 1 1 60 3 74669816 74669835 GCTTTCATGTTCTGATGCAC 58 74669775 74669794 AATCACTCCAGAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr641 ENSRNOG00000030406 ENSRNOT00000049517 1 1 1 60 3 76926095 76926116 TTTGGGTCTTACAGAGAATCAG 58 76926056 76926075 CATGATTAGAAGCACAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med21 ENSRNOG00000001820 ENSRNOT00000002500 1 1 1 92 4 180966264 180966955 CTACAGAAGAGTATGCCCAG 57 180967010 180967028 ACTCTTCACTGGGTAAGGA 57 NA Rattus norvegicus 81 Tubb5 ENSRNOG00000061216 ENSRNOT00000079854 1 1 1 98 20 3422693 3423996 GTGCTAAGTTCTGGGAGGT 59 3424058 3424076 ACACAGAGATTCGGTCCAG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229,ENSRNOT00000014023 2 2 2 80 4 7706633 7706652 TCTAGCTCAGAAAGCACTGG 60 7706695 7707544 GCATTAGCAACCAGCAGTG 60 NA Rattus norvegicus 81 Ubac1 ENSRNOG00000017983 ENSRNOT00000024352 1 1 1 80 3 3463645 3463847 AGGCAAATGCTATGTTGGA 57 3463583 3463601 GAAAGCCCATCTCTGTGAG 58 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 3 2 2 80 13 101018066 101018089 ACCTGAGTGGAATTACATAGATCC 60 101018128 101018857 AAGGACATCCAGAACTCGC 60 NA Rattus norvegicus 81 Cisd2 ENSRNOG00000048258 ENSRNOT00000074632 1 1 1 81 2 240597721 240611432 CCTCACAGTTGCAGAATGG 59 240597658 240597676 GAATGGACGAACTGCAAGG 59 NA Rattus norvegicus 81 Lpo ENSRNOG00000008422 ENSRNOT00000011402 3 1 1 80 10 75111718 75112036 GTAACAACAGGAAGAATCCAGC 60 75111659 75111677 GTCCATCCTCGTACTCTGC 60 NA Rattus norvegicus 81 Olr658 ENSRNOG00000049836 ENSRNOT00000007996 2 1 1 60 3 77127045 77127064 ATCCTAGTCACCATCACCTG 59 77127004 77127025 GGCAGAGAAAGTAGTACATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 1 5 5 80 8 73120149 73121286 CAGAGATTAGCCCAGGTGG 60 73120087 73120105 CACATCCTTCTGACCAGGG 60 NA Rattus norvegicus 81 Rhbdf2 ENSRNOG00000011459 ENSRNOT00000068026 1 1 1 80 10 105577783 105577801 ACAGAGGCGTGTATGAGAG 59 105577596 105577739 GGTGGATGAGGTCAATCGA 59 NA Rattus norvegicus 81 Hif3a ENSRNOG00000017198 ENSRNOT00000023490 3 1 1 80 1 78989746 78990018 CATCCACACTTTGCTGAGC 60 78989684 78989702 GTCCACAGATAGCCTCCAG 59 NA Rattus norvegicus 81 Nrxn3 ENSRNOG00000047574 ENSRNOT00000064872 2 1 1 80 6 114018598 114018617 TGTTTCATCTGCTGAATGCT 58 114018657 114066442 AGACTCTTATCTGACCTACCTG 58 NA Rattus norvegicus 81 B4galnt4 ENSRNOG00000053075 ENSRNOT00000086483 2 1 1 80 1 213876529 213876626 GACTGCAGTTCGTGTACCT 60 213876669 213876688 AGCACTTGTTCTCTGTCTCC 60 NA Rattus norvegicus 81 Slc24a5 ENSRNOG00000005158 ENSRNOT00000043611 3 1 1 80 3 117346589 117346699 GCCTTCTTGGGTGTATTTATCAC 60 117346736 117346757 GCCGAGGAGATTATAAATTGCA 59 NA Rattus norvegicus 81 Prss34 ENSRNOG00000018466 ENSRNOT00000024904 3 1 1 83 10 14657238 14657257 AAATGGGAACACATCTGTGG 59 14657300 14657527 CATCTCTTTCAGCTCTACACAG 59 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 3 2 2 80 6 111077266 111077701 ACACAATGACAGCCTAACC 58 111077745 111077763 TCTGCCTCCAAGTAAACCT 58 NA Rattus norvegicus 81 Fam175b ENSRNOG00000017222 ENSRNOT00000023214 1 1 1 80 1 204876289 204876307 TCTCTACCGCCAACAACTC 59 204876345 204877929 GTGATATCCTTTGATTATACCTGCG 60 NA Rattus norvegicus 81 Syngr2 ENSRNOG00000050547 ENSRNOT00000074225 3 1 1 93 10 106815618 106815999 CCTGCTCTTCTCAGCTCTC 60 106816055 106816074 CAACACGTCATCAGGTTTGG 60 NA Rattus norvegicus 81 Vsig8 ENSRNOG00000008668 ENSRNOT00000011539 3 1 1 68 13 90949379 90949698 TGAAAGTCTCAGACTCCCA 58 90949730 90949748 CTAGCATGAGCAAAGAGCC 59 NA DesignRelaxed Rattus norvegicus 81 Crygb ENSRNOG00000032926 ENSRNOT00000043766 2 1 1 93 9 71798131 71798237 GCGAGATGGGAAAGATCAC 58 71798056 71798074 AAGTAGGTCTGCAGGTTGG 59 NA InUTR Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 2 2 2 80 1 102864263 102867293 CATTAGACGAGGGCTATGG 57 102867336 102867355 TGGCAGCATTACTATTCTCC 58 NA Rattus norvegicus 81 Ambn ENSRNOG00000003718 ENSRNOT00000005003 1 1 1 80 14 21247056 21247787 CACTTTCTCAGTATTCTAGACTTGG 59 21247000 21247018 AATTATGCGGTGGGAGGAG 60 NA Rattus norvegicus 81 Cenpm ENSRNOG00000023262 ENSRNOT00000036917 1 1 1 84 7 123470748 123472983 AAATACAGCCTCCAGAAAGTG 58 123470684 123470702 CTGTGACAAGGAAGCACAC 59 NA Rattus norvegicus 81 Slc39a2 ENSRNOG00000010375 ENSRNOT00000013786 3 1 1 80 15 28296053 28296072 GTTGATGCATATGACTGCTG 57 28296113 28296369 CTTCCTGTACTATTCTGCACC 58 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 3 2 2 80 4 72011188 72013102 CTAGAAACTTATCTCCAGCTCCA 60 72011130 72011150 AGTGAGGGTTTGGTAGTTAGC 60 NA Rattus norvegicus 81 Bora ENSRNOG00000024798 ENSRNOT00000039344 1 1 1 80 15 83457569 83457587 CCATCGGCTATCTGTTCAC 58 83457631 83460103 AAACTTCCTGTGCTCTGAC 58 NA Rattus norvegicus 81 Pigw ENSRNOG00000027857 ENSRNOT00000029769 1 1 1 60 10 72195438 72195457 GAGAAGAGCACAGGTCAGAG 60 72195397 72195415 AACAGCCACCGAGAATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 T2 ENSRNOG00000024172 ENSRNOT00000033685 1 1 1 80 1 52941722 52942660 CCTACCTGATTGTAGGGCTG 60 52941661 52941681 TCCAGAAATCCTCGTAGTCAC 59 NA Rattus norvegicus 81 Ube4b ENSRNOG00000014986 ENSRNOT00000055572 1 1 1 80 5 166196022 166198731 GGTGTTCAAGCAGATCTTTATCC 60 166195964 166195984 AAGTAGTCGCTATCCAAGGAG 59 NA Rattus norvegicus 81 Ube4b ENSRNOG00000014986 ENSRNOT00000055572 2 1 1 80 5 166196021 166198730 GTGTTCAAGCAGATCTTTATCCC 60 166195963 166195984 AAAGTAGTCGCTATCCAAGGAG 60 NA Rattus norvegicus 81 Cd248 ENSRNOG00000020197 ENSRNOT00000027339 1 1 1 60 1 220447463 220447482 GGTGGCTTTGAGTGTTACTG 59 220447503 220447523 TACAACTGATACCATCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266,ENSRNOT00000017550 3 2 2 80 X 122951686 122951705 AAGAAGAGGAATCGTTGCCA 60 122951746 122952611 AGCAGGAAGATCTTGTTTGGA 60 NA Rattus norvegicus 81 RGD1559810 ENSRNOG00000026207 ENSRNOT00000038249 3 1 1 146 20 36060746 36060764 TGAGGGTGACAGTACATGG 59 36060597 36060639 ATCCAGACACTTGAATCTTTGC 59 NA Rattus norvegicus 81 RGD1561137 ENSRNOG00000030143 ENSRNOT00000043621 3 1 1 60 3 21984125 21984143 TGTGGCCCAAATTTATGCT 58 21984166 21984185 TTGGTAATAAGCCACCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp4 ENSRNOG00000018012 ENSRNOT00000024412 2 1 1 80 1 47120857 47122360 CTTACCAGTTACGGGAGCA 59 47122403 47122422 CTGTGGATTGGTGCAATAGG 59 NA Rattus norvegicus 81 Ring1 ENSRNOG00000000467 ENSRNOT00000000543 2 1 1 80 20 3813548 3813567 AGAGATCGAGCTTGTGTTCC 60 3813300 3813510 GTAGTCTTCACATACCTAGTCTGG 60 NA Rattus norvegicus 81 Ring1 ENSRNOG00000000467 ENSRNOT00000000543 3 1 1 81 20 3813548 3813567 AGAGATCGAGCTTGTGTTCC 60 3813299 3813509 AGTAGTCTTCACATACCTAGTCTG 59 NA Rattus norvegicus 81 Vom1r49 ENSRNOG00000050887 ENSRNOT00000046111 2 1 1 60 1 67660740 67660759 CAATCAGCCCTAATCACTCC 58 67660778 67660800 CCAATGTACTTGATGACTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sprr3 ENSRNOG00000024046 ENSRNOT00000030295 3 1 1 60 2 192642331 192642349 ACACTGTTGTTCTTGAGCC 58 192642289 192642309 GTGACGTTGGTAGAACATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alms1 ENSRNOG00000022343 ENSRNOT00000045735 2 1 1 80 4 117465957 117466264 CTGTGAAGGAGTCTCATGG 57 117466308 117466326 CTGTAAATCTTGGGCAGGT 57 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543,ENSRNOT00000050994 3 2 2 85 4 78750319 78754697 GCTTCGATTAAGATCGCGC 60 78750252 78750270 TTGAACTGAGCCTCTGGTG 60 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 1 1 1 69 7 11322225 11323283 CTCTGAGTACCCGACATGG 59 11323316 11323334 CGGTTCTAGGTCCTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr493 ENSRNOG00000032730 ENSRNOT00000045888 2 1 1 60 3 74790167 74790186 CTTGTTCTTGTGTCCTACCT 57 74790126 74790144 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a13 ENSRNOG00000009957 ENSRNOT00000013817 2 1 1 80 4 31651633 31651653 ACAACATGGAGCTCATTAGGA 59 31650933 31651593 CAAACTCCTCCTTAGTCACCT 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 3 3 3 60 13 79888256 79888274 TCTATGCCCGGAAATACCA 58 79888297 79888316 TGTTGTATCACCACACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361475 ENSRNOG00000033891 ENSRNOT00000045139 1 1 1 80 20 33175113 33181024 GTGTTTGAGAATGCTGCTG 58 33181065 33181086 GTATCTTCTTTCCTCCTTTGCT 58 NA Rattus norvegicus 81 Gabre ENSRNOG00000061182 ENSRNOT00000087138 3 1 1 80 X 152227076 152227097 ATGATATCACCATACCCAACCA 59 152226321 152227039 CATCAATGGTCATCCTAACTGTG 60 NA Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000079750,ENSRNOT00000039998 2 2 2 61 20 3689765 3689783 AAACCTCCTGGCTCTTCTG 59 3689722 3689740 TCTAACCTGGCTCCAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl16 ENSRNOG00000022248 ENSRNOT00000039777 2 1 1 90 10 15184354 15184372 CATCGACAACTACTCGCTC 58 15184425 15185106 CAACATCACCTCTAGACCAG 58 NA Rattus norvegicus 81 Arhgef18 ENSRNOG00000028090 ENSRNOT00000066281 1 1 1 80 12 1984188 1987112 GTCTTTGCTTCTGTGGACTC 59 1987155 1987173 CTTCTCCTCGTTGGCTACC 60 NA Rattus norvegicus 81 AABR07030995.1 ENSRNOG00000058822 ENSRNOT00000074598 3 1 1 80 10 111775494 111776910 AGGAGAAACATTGGTTCCC 57 111776954 111776972 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Akr1c14 ENSRNOG00000017672 ENSRNOT00000023835 1 1 1 80 17 69827030 69827050 CGTGTAGCACTAAATGATGGT 59 69822095 69826990 TTCATCCTTAGCAACCTTCTC 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 1 3 7 80 9 43625916 43625934 TTGAGCCAATGGTTGTGAG 58 43625977 43632705 AAATGGCTTCAATGGTTTCG 58 NA Rattus norvegicus 81 Ppm1e ENSRNOG00000024730 ENSRNOT00000003859 3 1 1 80 10 74566794 74566812 TGAAGTCCTCCAGAGTGAC 58 74562154 74566751 GTCTCAATTTCCACAGTCCC 59 NA Rattus norvegicus 81 Olr789 ENSRNOG00000048999 ENSRNOT00000071479 3 1 1 60 3 103345203 103345221 GCATGATGGGAAACTCCCT 60 103345161 103345182 GGAGAATGTAAGTGAGGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1432 ENSRNOG00000002858 ENSRNOT00000003818 2 1 1 60 10 44256120 44256140 AGCTCAACAAGGTCATTTCTG 59 44256080 44256100 ATAACTGGGTTCAGTAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1583 ENSRNOG00000045582 ENSRNOT00000044784 3 1 1 60 13 91725854 91725874 CTTCTTCTGTGATGTGAGACC 59 91725895 91725914 CTCATTGATAGTGGTGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 1 1 1 60 1 67917879 67917898 ACAATCAGCCCTAATCACTC 57 67917918 67917939 CAATGTACTTGATGACTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382,ENSRNOT00000074378 1 3 3 82 5 159066880 159066900 GTCTTCATCACACCAAATCCC 59 159056499 159066836 TTCTCCTCCCTTAGTCCGA 59 NA Rattus norvegicus 81 Ivd ENSRNOG00000009421 ENSRNOT00000013829 2 1 1 80 3 110686802 110689225 GGCATTCAATGTTTAGGTGGA 59 110689266 110689285 CTCGTACAGTTTGGCATCTC 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 1 2 2 83 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976090 56982457 AAGATCTGTGCATATGACTCCT 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799,ENSRNOT00000003494 3 2 2 80 X 71441386 71442045 TTCAAACGTACAGGGATGG 58 71442089 71442107 AGCTCTGATCTCCTCTTCC 58 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 1 3 3 91 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085530 83085548 ATTGCCACTCTCGATCCAG 60 NA Rattus norvegicus 81 Map2k2 ENSRNOG00000020005 ENSRNOT00000027272 3 1 1 86 7 11467856 11475669 CCAGAAAGCTGATCCACCT 59 11467788 11467806 GTGAGTTGCACTCATGCAG 60 NA Rattus norvegicus 81 Olr583 ENSRNOG00000049657 ENSRNOT00000042996 3 1 1 60 3 75849096 75849116 CACCTCTCATTCTCTGACCTC 60 75849136 75849156 GATCTAACAGCATCTTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000077058 2 1 2 84 12 22453768 22453882 GAGTACTTTGGTCGGTGTG 58 22453930 22453948 TATGGAAGACACGGTCCAG 59 NA Rattus norvegicus 81 Olr239 ENSRNOG00000030863 ENSRNOT00000051241 1 1 1 60 1 172075729 172075747 GCTACTCCACTCTCATGTC 57 172075687 172075705 CCCGCATAGGAAATAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017656.1 ENSRNOG00000047226 ENSRNOT00000073230 1 1 1 80 15 29712400 29712595 GATTTGCTGGGTGAGAGGA 59 29712338 29712358 CTCAGAGAAGAATTGGTTCCC 58 NA Rattus norvegicus 81 Pcdhb4 ENSRNOG00000027469 ENSRNOT00000027210 2 1 1 60 18 30388525 30388546 AGAAATGCTCCTAACAATCCCT 60 30388566 30388585 TGCCTTTAGAGGAAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 1 1 2 60 3 55466599 55466618 GGTCAGCTTGAATGTGTACC 59 55466640 55466715 AAAGGTGAATGCAAACAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Sec16a ENSRNOG00000019122 ENSRNOT00000064083 3 1 1 80 3 3875777 3875796 CAGCTCCTCAAAGTGATACC 58 3875468 3875734 CAGCAAGGTCTCTAAGCTG 58 NA Rattus norvegicus 81 Arl8b ENSRNOG00000055860 ENSRNOT00000080663 2 1 1 80 4 140870971 140870991 TGAAGATATGATACCCACCGT 59 140871028 140872081 CCTATGTCCCAGATCTTTATTGTG 59 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 3 2 2 80 1 52444621 52444640 TCTGAAAGTGTTAGTGCGGA 59 52424719 52444582 CTTAGGAGATGGTTCATCTTCTG 59 NA Rattus norvegicus 81 LOC681470 ENSRNOG00000049477 ENSRNOT00000071206 2 1 1 60 13 91768299 91768318 AAGGTTTCTCCAGCTTTCAG 58 91768341 91768359 TACAAGGCCAGAAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000088447 1 1 2 111 3 173955863 173955883 GGAATAAAGAAGTCACCTCCC 58 173956910 173959471 TTTATACTGCAGCCTTTAGCAG 59 NA Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 3 2 2 80 10 110159060 110161379 ATGCTCAAATTTGGTGCCAG 60 110158999 110159021 GGAGTGTCTTAATCGTTCTTCTC 59 NA Rattus norvegicus 81 AABR07032503.1 ENSRNOG00000038598 ENSRNOT00000058894 2 1 1 81 18 68926105 68926125 CCAGCATTACATCAAGAACAC 58 68925309 68926063 GAGAGTTTGCACCTGATCTC 58 NA Rattus norvegicus 81 Dnm3 ENSRNOG00000026490 ENSRNOT00000067653 2 1 1 80 13 80179094 80179976 GAAATCAGGGAACCAATCTTCC 59 80140072 80140090 TGATGCCAATGTTGCTGAC 59 NA Rattus norvegicus 81 Chordc1 ENSRNOG00000026643 ENSRNOT00000030569 3 1 1 103 8 17425047 17432187 ATGCCCTAAAGGGTTGGTC 60 17433163 17433183 TGGCTTCTCACTATTATGCCT 59 NA Rattus norvegicus 81 Nt5dc3 ENSRNOG00000026793 ENSRNOT00000031871 3 1 1 80 7 27344139 27344160 GAAGAGGTCATTGACATGTACG 59 27344201 27345217 CCCGTGAGAACTCTTTCCA 59 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000058563 ENSRNOT00000080489 2 1 1 80 12 13391085 13392484 TCCCAGGACTATCAGAACCA 60 13392527 13392545 ATGACAAGTCCCTCTTCCG 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000090538,ENSRNOT00000014470 3 2 4 80 2 149249582 149249602 ACTTGTGCCTATTACTCTGCT 59 149249643 149273129 CTGTGTCCACTCCAAATTGG 59 NA Rattus norvegicus 81 Zc3h13 ENSRNOG00000011237 ENSRNOT00000015467 1 1 1 80 15 57366200 57370374 ACCAACAGAGATGATTCTGAC 58 57370415 57370434 TTTCTGACGCTTCATTTCCA 58 NA Rattus norvegicus 81 Gpatch1 ENSRNOG00000011584 ENSRNOT00000015791 2 1 1 80 1 91540616 91542862 TCTCTGATCCATGCTGCTG 60 91540554 91540573 CCGTTCATCGATCTGTACCT 59 NA Rattus norvegicus 81 LOC100910807 ENSRNOG00000028899 ENSRNOT00000049424 3 1 1 103 X 124393485 124393503 CTCACTTGAACCAGGAAGC 59 124393570 124395697 TTTCTACTCTCCATGCCGG 59 NA InUTR Rattus norvegicus 81 Arpc1b ENSRNOG00000000991 ENSRNOT00000001315 2 1 1 85 12 11256204 11256222 CTGTCCTTAGCCTGGACTG 60 11255199 11256156 ATAGGCAGAGAAGATCCTGC 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 3 2 2 80 1 13287074 13287093 AGTTCCCATTCGTATGACTC 57 13287136 13288140 GGGTTAGTATGATCACCGC 58 NA Rattus norvegicus 81 Sfmbt2 ENSRNOG00000029235 ENSRNOT00000065942 1 1 1 80 17 71876084 71878353 TGTGCTTCAGACATGTGGA 59 71876022 71876040 GATGGTTCTTGTTGGCCAC 60 NA Rattus norvegicus 81 Psmc3 ENSRNOG00000011414 ENSRNOT00000015757 3 1 1 80 3 79877522 79877540 AGGAGGTGCTCAAGATGTC 59 79877580 79877903 CACTCTTCATGATCTTGATCTCG 59 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 1 1 1 80 8 12329504 12330997 GACAAGACAGTTCCCTACC 57 12331039 12331059 AATAGACAGCTGTACAAGTGG 58 NA Rattus norvegicus 81 Mrpl53 ENSRNOG00000052279 ENSRNOT00000084616 1 1 1 80 4 114808082 114808100 CAACCTCAACTGCTCTGTG 59 114808142 114808257 TACCCATCTCCGAATAACACG 60 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 1 1 1 80 10 108356363 108356384 GTATGAGGCTCAATACTTGTCC 59 108356424 108356593 TCAATCTCTGTGATGGCCTC 60 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 2 1 1 80 10 108356362 108356383 TGTATGAGGCTCAATACTTGTC 58 108356424 108356592 CAATCTCTGTGATGGCCTC 58 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554,ENSRNOT00000024872 3 2 2 80 17 77613568 77615388 CATTGAGGAGTTAGAGGCAC 58 77615430 77615449 AGGAACTTGGTGATGATGTC 58 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 3 2 2 82 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352849 68352867 GTGTCATGGTGAGTGTCCT 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000043348 ENSRNOT00000064521 1 1 1 105 X 123707221 123707239 AGAATCAAGCGATTCCTGG 58 123705413 123707156 GTCTTCTCTTAGAGTTGTACCTG 58 NA Rattus norvegicus 81 Ptpn21 ENSRNOG00000060568 ENSRNOT00000079697 1 1 1 80 6 122699288 122699306 CACCGTCTACTTTGGAGTG 58 122689220 122699246 AGGTAATACTGGTACCTGGTG 59 NA Rattus norvegicus 81 LOC100362409 ENSRNOG00000049515 ENSRNOT00000073734 1 1 1 80 X 83860208 83862011 ACAATGTGATTTAGTTGCTGGG 60 83860149 83860167 TATTCCTCAGCCAGCTTCC 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053,ENSRNOT00000004753 2 2 2 80 10 46572646 46572665 GTGGTTTCCAACATGACCTG 60 46572495 46572604 CATGTAGGAAGACCCTCCTC 59 NA Rattus norvegicus 81 RGD1309651 ENSRNOG00000017646 ENSRNOT00000023721 1 1 1 166 19 54187327 54204687 GTCTGAAAGGCTTTAAGATGTG 58 54184991 54187200 CTCATCCATCCAGACTTGG 57 NA Rattus norvegicus 81 LOC679149 ENSRNOG00000048039 ENSRNOT00000074240 2 1 1 80 19 2192 2952 TGAGATGTTCTCTACTATGGTAGC 59 2135 2153 GCTCTTAGACAGTGCACCA 60 NA Rattus norvegicus 81 Tmem207 ENSRNOG00000048672 ENSRNOT00000074688 1 1 1 80 11 77654669 77654687 AAAGCTGTGGAACTGATCG 58 77654731 77663702 TTTCTGCACCATAAACGGG 59 NA Rattus norvegicus 81 Olr555 ENSRNOG00000010052 ENSRNOT00000013328 2 1 1 60 3 75299854 75299875 ACTTCTTCTGTGACATACCTCC 60 75299893 75299914 TCATTCACAAAGATGTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 3 2 2 80 5 147825159 147825177 CTATGAGATGGAGGGAGGG 58 147824990 147825116 GAACATTCTTTCCCAAAGGC 58 NA Rattus norvegicus 81 P3h2 ENSRNOG00000055751 ENSRNOT00000089540 3 1 1 80 11 78147027 78147051 CAATGTAGACTTCTATGAGAGTCTG 59 78147087 78147442 AATGCTGTTAAATCCTCTCGG 59 NA Rattus norvegicus 81 Rapgefl1 ENSRNOG00000027871 ENSRNOT00000030425 1 1 1 80 10 86763463 86763484 TCATCTCCTAGCATTCAGTAGC 60 86763524 86763794 CCTCCATGTCTAGACAGAGG 59 NA InUTR Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 2 1 1 84 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495428 181500778 TGTTCATGTTGCGATCTCG 59 NA Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 3 1 1 85 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495428 181500779 ATGTTCATGTTGCGATCTCG 59 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 2 2 2 60 10 47340650 47340668 GAGGATGAGGTGGCTACAG 59 47340692 47340710 TGTCAAAGTCATGCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690291 ENSRNOG00000058639 ENSRNOT00000088672 1 1 1 60 4 72308662 72308680 CCACATTCTGCCTCATCTG 58 72308702 72308722 CCACAACAGCATAGAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb5 ENSRNOG00000020084 ENSRNOT00000027206 1 1 1 60 18 30400541 30400560 CCCAGAGCTACCAGTATGAG 59 30400583 30400601 AATTTGAACTCACCAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl41 ENSRNOG00000042233 ENSRNOT00000066159 3 1 1 81 7 2973780 2973912 TCTTCCTTGAGACTCCTGC 59 2973196 2973215 CATCTTTCTTCTCTTGCGCT 59 NA InUTR Rattus norvegicus 81 AC097912.1 ENSRNOG00000053213 ENSRNOT00000085902 2 1 1 60 4 71790712 71790733 ACCCACATTGATCTTCATTGTC 59 71790753 71790772 ATTCTGCAACATAGAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galr1 ENSRNOG00000016654 ENSRNOT00000022401 2 1 1 88 18 79257744 79257762 ACAAGAAGGCTTACGTGGT 59 79252291 79257693 ATTGAGAACCTTGGCATAGC 58 NA Rattus norvegicus 81 Olr801 ENSRNOG00000061052 ENSRNOT00000077384 3 1 1 60 4 71870243 71870261 AATGCAACCTGGGTAAGTG 58 71870201 71870220 CTTGGATGTGTTTGTCACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gse1 ENSRNOG00000017489 ENSRNOT00000023607 1 1 1 80 19 54138907 54139348 CTTCCAACCACTCAACCTC 58 54139391 54139410 AAGCTTCTCAGGTAGTCCTC 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000048482 2 1 5 80 14 22599441 22599460 CATCCTTGCCAAACATTGAG 58 22599500 22607590 CAAAGTCTTCCATTTCCTTAGG 57 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 1 2 2 80 2 196511844 196511863 GTATGAAGACATCCTCAGCC 58 196510767 196511802 TCACAGCACCCATATTAGGA 58 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 1 2 2 98 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780663 117780682 TTCTTGTCTCTGGAGCTCAG 59 NA Rattus norvegicus 81 rnf141 ENSRNOG00000017900 ENSRNOT00000024561 2 1 1 85 1 175647003 175650545 CTGAACTCAATGATGTAACTGC 58 175646939 175646957 AGAAGAATCAGACCCAGGT 58 NA Rattus norvegicus 81 Cpne1 ENSRNOG00000050864 ENSRNOT00000026657 2 1 1 80 3 151617868 151618039 ACGATTTCAGAATGCTCCA 57 151617806 151617827 TTGAAGTAGGAAACCATCTGAG 58 NA Rattus norvegicus 81 Sorcs3 ENSRNOG00000028832 ENSRNOT00000065001 3 1 1 80 1 268189281 268189300 TACTGATCCTGACAAAGCTC 57 268189341 268291402 CACCATAATCTACTGACCTCC 57 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 2 2 2 101 3 3657614 3657633 CAAGTGTCTCAAGTGCAGTG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC680058 ENSRNOG00000026891 ENSRNOT00000034790 3 1 1 63 1 79727688 79727706 AAAGAAAGAAGGCTGTCGT 57 79727750 79727770 CCTTCTTCAATGACTATGCAC 57 NA DesignNoJunction Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000081406 3 1 3 86 9 81566992 81567013 AGAATACATTCCCAGAAAGAGG 58 81586089 81586107 AAGTGAGATGGAGGCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr695 ENSRNOG00000050826 ENSRNOT00000047996 1 1 1 60 3 78323401 78323422 CCTGGCTTTCTTGTCTTTACTG 60 78323362 78323381 AATCATCTTGGGTGTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910370 ENSRNOG00000048523 ENSRNOT00000073724 3 1 1 80 7 117969533 117969700 TGCCATGAATCCTGTGGAG 60 117969743 117969762 GCATCTCTTCGGATAGTGGA 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 3 2 2 81 3 13247869 13270127 TCACAGTATCACAGGTATCCA 58 13247808 13247826 GCCTCCTCTTGAAATTTGC 57 NA Rattus norvegicus 81 Ift27 ENSRNOG00000006440 ENSRNOT00000008450 1 1 1 80 7 119399627 119401046 AAATGCTGGATAAACTGTGGG 59 119399567 119399585 AGCTGATGAAGGACTGCTC 60 NA Rattus norvegicus 81 AABR07017639.1 ENSRNOG00000049830 ENSRNOT00000074782 2 1 1 96 15 29532820 29532956 GCTCCTCATCCTCACAAGG 60 29532742 29532766 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 LOC100361240 ENSRNOG00000049099 ENSRNOT00000047113 1 1 1 60 15 19429694 19429714 GCTTGGAGACATTTCTACTGG 59 19429735 19429754 GGTAATCTCGGAGGTATTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1519 ENSRNOG00000045565 ENSRNOT00000074715 3 1 1 60 10 61160878 61160896 TATGGGACGCTTGGTATGG 59 61160917 61160938 CTGAGTCTTTCATGGAGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 1 1 1 80 5 144294106 144294583 CTGGAGATGGTCCAGATGG 59 144294626 144294645 CATCCTGATTTCTGTCACGC 59 NA Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 2 1 1 82 5 144294106 144294583 CTGGAGATGGTCCAGATGG 59 144294627 144294647 CTCATCCTGATTTCTGTCACG 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000066130 1 1 3 105 X 123989721 123990558 AAGGTACCTCCTTTGCCAC 60 123988554 123988572 ATCTGTCATGGAGATGGCG 60 NA Rattus norvegicus 81 Itgb2 ENSRNOG00000001224 ENSRNOT00000001639 3 1 1 80 20 11785447 11787256 AAGCCTACTACAAACTCTCCTC 59 11785388 11785409 AGGAGTCATAGGTGACTTTCAG 59 NA Rattus norvegicus 81 Olr1440 ENSRNOG00000048241 ENSRNOT00000048778 2 1 1 60 10 44972280 44972298 GACACCTTCCTCTTCACAG 58 44972238 44972258 TGATGTTTCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11bnl ENSRNOG00000002002 ENSRNOT00000002743 1 1 1 80 14 24108173 24108193 ATCTTACATCAGATGCTGGAG 57 24107463 24108132 TTTAGTGATTTCCGTGAGCT 57 NA Rattus norvegicus 81 Smim3 ENSRNOG00000019536 ENSRNOT00000026426 1 1 1 64 18 55771401 55771419 GCTTGTAATCCTGACTGGG 58 55746135 55746153 GATTGGCTGATAGCATCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ston2 ENSRNOG00000004458 ENSRNOT00000005881 3 1 1 80 6 115401576 115408199 CAAGAACTCAGCTTCTGGC 59 115401514 115401532 AATCTGGAAGGCACTTCCC 60 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866 2 1 2 159 1 215136332 215136350 GTTGTTCTGGTTGTGGGTC 59 215143925 215143973 TTACAGCAGCTGGACTGAC 60 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866 3 1 2 160 1 215136331 215136349 TGTTGTTCTGGTTGTGGGT 60 215143925 215143973 TTACAGCAGCTGGACTGAC 60 NA Rattus norvegicus 81 Fastkd2 ENSRNOG00000023923 ENSRNOT00000002872 3 1 1 80 9 70455291 70455586 GAAGAAATTGGAGATGAAAGCC 58 70455624 70455645 GCTAAGACTTCAAACATATGCC 58 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000063786 3 1 2 94 6 126636293 126636311 GAAGGAGTTGGTAGCGGAG 60 126632610 126636236 CTTCATCACCATCCAAAGCG 60 NA Rattus norvegicus 81 AABR07035776.1 ENSRNOG00000050059 ENSRNOT00000072653 1 1 1 80 12 21932325 21932345 TCTTCTGCAAACAACAGAAGG 59 21932386 21937333 GTGCTGGTGTTATTGGTCAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000050002 3 1 4 80 7 123627389 123628035 TCATTCCTGAGGTTCTTAACAC 58 123627330 123627349 TCTTCTGACCTTGGAAGACC 59 NA Rattus norvegicus 81 LOC100911693 ENSRNOG00000030704 ENSRNOT00000042983 1 1 1 60 2 104999678 104999697 ACCTTGAAGAGAAGAAGCGT 59 104999637 104999656 GCAAAGATGAACTGAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc10a7 ENSRNOG00000011991 ENSRNOT00000015985 1 1 1 85 19 33064395 33073267 AAACAGAGGAGCTGACCAG 59 33064328 33064346 TGTTGTTGGGAAGAAGGCA 60 NA Rattus norvegicus 81 Olr763 ENSRNOG00000042991 ENSRNOT00000046220 2 1 1 66 3 102683154 102683401 AAAGCAAATCGCTCTGCAG 60 102683429 102683449 TCTGAAGTTCCTGAGAGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 2 1 1 70 4 49372163 49372182 GAAAGCAAAGTCCTGCTAGC 60 49372215 49378969 ATTAACTTGGCGACAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r72 ENSRNOG00000056406 ENSRNOT00000086909 2 1 1 60 4 87700444 87700462 TGGTCATGTACTGGTTGGA 58 87700481 87700504 TCATACATCCATAACAGGACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr422 ENSRNOG00000032102 ENSRNOT00000044461 1 1 1 60 3 21060833 21060853 TGACAACCATTACTGTTCCTC 58 21060793 21060811 GAAATGCTTCGATCCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab11 ENSRNOG00000053317 ENSRNOT00000082444 1 1 1 80 6 123865746 123889160 CACTTCTGGTGTATCACTTGAG 59 123865687 123865709 CTTATCTCATTCCGATAGAGCTG 59 NA Rattus norvegicus 81 Wbp2nl ENSRNOG00000008038 ENSRNOT00000010606 2 1 1 90 7 123540876 123546456 CATACCAAGCTGCCTATGGA 60 123546509 123546527 GGTGGAACTCCGTATCCTG 60 NA Rattus norvegicus 81 LOC292543 ENSRNOG00000054438 ENSRNOT00000091279 3 1 1 80 1 64629524 64631262 CTCCACTTTAAGGTTCCAGC 59 64631304 64631323 AGTCATTTGCATCATCAGGT 58 NA Rattus norvegicus 81 Pebp4 ENSRNOG00000026247 ENSRNOT00000039454 1 1 1 80 15 51727306 51729679 ATATAATAACAGACTACCAGCCTCC 60 51729714 51729735 CCTGAAGGTAGACAAAGAACTG 59 NA Rattus norvegicus 81 Natd1 ENSRNOG00000050567 ENSRNOT00000075751 2 1 1 191 10 47158440 47164507 CCTCAACGGATGTCATGAC 58 47157533 47157551 TTCTGGATGTACCAGCAGG 59 NA Rattus norvegicus 81 Ccnj ENSRNOG00000014551 ENSRNOT00000019521 1 1 1 80 1 260107090 260107193 GTGTCTCTGCAAGATTATGCC 60 260107233 260107253 GATAATCCTCGAAGAAGCCAC 59 NA Rattus norvegicus 81 Slc17a9 ENSRNOG00000010275 ENSRNOT00000013623 2 1 1 80 3 176243485 176244409 TAAGTTCATGCAGGTCATGG 58 176244452 176244470 GACTTGAGGAAGCTTGTGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 2 1 4 80 9 81575708 81575842 TCTTCACCTTTGTGGAACC 58 81575646 81575664 CACCCTGTACTCACTAGGA 57 NA Rattus norvegicus 81 Mpc1 ENSRNOG00000012415 ENSRNOT00000017282 3 1 1 81 1 53027717 53038112 CGGGACTATCTCATGAGTACTC 59 53027657 53027678 TCTTCATGTCATTGATAGCAGC 59 NA Rattus norvegicus 81 Ccdc61 ENSRNOG00000013767 ENSRNOT00000018495 2 1 1 80 1 79809969 79810224 GATGCCAACTTCATTGAAGAC 58 79809909 79809927 TGACTCCAGCATGTTACAG 57 NA Rattus norvegicus 81 Morf4l2 ENSRNOG00000002389 ENSRNOT00000003247 1 1 1 80 X 107396027 107397119 AGAAGGAACATTGTTGGTTGG 59 107395967 107395987 ATTGTTGTCCACGAGTTTGAG 59 NA InUTR Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822,ENSRNOT00000079452 1 2 2 80 9 92309240 92309260 TTTGATAATGAGCAGCAGAGG 59 92308618 92309199 TAAACTCCGAAATCCTCCGA 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923,ENSRNOT00000008160 1 2 2 80 7 142678479 142678501 CCTTGAGACACTACTATTTCACC 59 142678540 142682077 GGAACATTCCCACAATGGAG 59 NA Rattus norvegicus 81 Rn60_X_0706.1 ENSRNOG00000003035 ENSRNOT00000004052 3 1 1 60 X 69717758 69717777 GTTGACTCCAAGTTCCTGAG 58 69717717 69717735 TTCTTCAGGCCTTGTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina1f ENSRNOG00000037762 ENSRNOT00000057322 2 1 1 82 6 127566067 127566902 GACGACAATCTAATCTAAGGATGG 59 127566008 127566029 CATCATTGACTCCACATCATGG 60 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 2 1 1 60 3 21363383 21363403 GATATTCCTGCCCATCTACCT 59 21363424 21363443 GATGAGTAGCACCATTCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col27a1 ENSRNOG00000007657 ENSRNOT00000010333 3 1 1 80 5 79165943 79167440 GGCGGATGGTATCTACTGG 59 79167482 79167502 CCATGTGTAAAGTTGCAGGAG 60 NA Rattus norvegicus 81 Agpat2 ENSRNOG00000019466 ENSRNOT00000026408 3 1 1 80 3 4044911 4045874 CTCTTCACCTCAGGAACGA 59 4044849 4044867 TTTGGTGACATCAGCATCC 58 NA Rattus norvegicus 81 LOC100911027 ENSRNOG00000046250 ENSRNOT00000074549 2 1 1 88 1 54730525 54748641 TGCCTGGAGATTGTACTTGG 60 54730456 54730474 AACATGACCCATCCTTGCA 60 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 2 1 1 60 13 71305990 71306008 TTCAGGTCTCGTCAAAGGT 59 71306031 71306050 AGGAACACCACCAAGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pop5 ENSRNOG00000001199 ENSRNOT00000001591 1 1 1 80 12 47138868 47139056 ACATTACATGTGGGAGGTACC 60 47138808 47138827 CAACAAGACCAACAGCTGTC 60 NA Rattus norvegicus 81 RGD1563975 ENSRNOG00000045953 ENSRNOT00000074996 1 1 1 94 X 130009024 130009043 AGGGTTGCTATAAATGTGCA 58 130009100 130009423 CAACTCCACCATCTTCCTG 58 NA InUTR Rattus norvegicus 81 RGD1563975 ENSRNOG00000045953 ENSRNOT00000074996 3 1 1 97 X 130009021 130009041 GCAAGGGTTGCTATAAATGTG 58 130009100 130009423 CAACTCCACCATCTTCCTG 58 NA InUTR Rattus norvegicus 81 Cdc45 ENSRNOG00000050071 ENSRNOT00000072027 3 1 1 80 11 86329454 86330115 GCAAGATACTTCAGGCCCT 60 86330159 86330177 TTTCAAGTTCTTGCCACCC 59 NA Rattus norvegicus 81 Spata16 ENSRNOG00000024521 ENSRNOT00000035263 3 1 1 80 2 112501316 112501334 CATGTTCTGGCTCTGTGGA 60 112501377 112539087 GCTTCTTCAATCATGGCCTG 60 NA Rattus norvegicus 81 Rep15 ENSRNOG00000001840 ENSRNOT00000002518 1 1 1 60 4 181429229 181429251 GAAGAGTTCTGTAACTTGGTAGG 59 181429268 181429289 GCACACCAAAGATGATAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013425.1 ENSRNOG00000050075 ENSRNOT00000073001 2 1 1 60 2 236822808 236822826 AACACATGGAAACAACCCT 58 236822766 236822786 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 1 2 2 80 3 5473684 5473704 TTTGGAATCATCGCACTTCAG 59 5472613 5473072 TCCTAAAGCCAGGTTCCTC 59 NA Rattus norvegicus 81 Ush2a ENSRNOG00000003738 ENSRNOT00000004992 2 1 1 80 13 107252192 107254410 CAGGAACTAAGGTATGTTGTGAC 59 107254448 107254468 GTGCGATGTATTTCTCCTCAC 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019,ENSRNOT00000060254 2 2 10 80 15 32244450 32425236 ACTTTCTCATGAGAGGAAACAG 58 32425276 32425295 CTAGTGAGGCTCCTTCAGAG 59 NA Rattus norvegicus 81 Morn4 ENSRNOG00000027156 ENSRNOT00000037490 2 1 1 83 1 261324534 261324555 CGGAGTCTTCATTCGATATGAC 59 261324308 261324490 AAAGTCAGCAAGCCAAAGC 60 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 1 2 2 80 1 79953613 79953995 CGGCTTGGAGAAGAAAGAG 58 79954039 79954057 TTGAAGACCTCCTTCACCA 58 NA Rattus norvegicus 81 LOC100912257 ENSRNOG00000049493 ENSRNOT00000071378 3 1 1 60 4 1697790 1697811 CTCACACCATTTGCATAATGAG 58 1697751 1697772 AAGTAGTGGTTGATTGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC114492 ENSRNOG00000032629 ENSRNOT00000050147 3 1 1 125 X 139261344 139261696 CATTCTTCAAGGCCTGTGAG 59 139261238 139261256 TCAAACTGAGTGCTGTCCA 59 NA InUTR Rattus norvegicus 81 Klhl30 ENSRNOG00000020105 ENSRNOT00000027232 1 1 1 83 9 98496683 98497042 ATGTCTACGTCACAGGTGG 59 98497089 98497107 CTTCCTTCAGTGGGAAGCA 60 NA Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 3 1 1 80 5 159439236 159439257 ACCGTCAACTACTATGAAGAGG 59 159439297 159446552 CAGTGAGATCTCAATGGCAG 59 NA Rattus norvegicus 81 AABR07051260.1 ENSRNOG00000026208 ENSRNOT00000035050 1 1 1 80 3 4285469 4285996 GAAGACAGGAATGTCTCAGG 58 4286036 4286057 TTCCATTGAGATTAACTCTGGG 58 NA Rattus norvegicus 81 Serpina5 ENSRNOG00000009855 ENSRNOT00000013138 1 1 1 80 6 127768357 127769269 CTTCAAAGCCAAGTGGCAG 60 127769312 127769331 ATGGTCTTCTTGGGAGTCAC 60 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796,ENSRNOT00000081866 2 2 2 80 1 240982047 240982065 ACTTGATGGCACTTCAGGA 59 240981908 240982006 CATTAATTGGGTCCATACCCTG 59 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000088588 2 1 2 89 1 218098403 218098423 AAGATGAAGGAGACCATTCCC 60 218097794 218098352 GTTCCATTTGCTGCACTCC 60 NA InUTR Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 2 2 2 81 7 142759256 142759274 TCCAGGGAAGCAAAGTCTG 60 142759319 142759342 TCCTCGTGGTTCACTTTCC 60 NA Rattus norvegicus 81 Psap ENSRNOG00000000571 ENSRNOT00000000696 3 1 1 81 20 29854623 29854641 CACCAAGGAGGAGATCCTG 59 29854683 29854924 AAATTCATCACACTGCTTCTGG 60 NA Rattus norvegicus 81 RGD1565617 ENSRNOG00000038254 ENSRNOT00000048879 3 1 1 60 19 3326282 3326303 TGGCATTAGTTATATGCACTGG 59 3326324 3326342 GATGAGGAGTTTGGGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam133b ENSRNOG00000009163 ENSRNOT00000012253 1 1 1 90 4 27730129 27732645 AGAGAACAACAGACAAAGCT 57 27730058 27730076 GAGTCTGAGCTTGAACTGG 58 NA Rattus norvegicus 81 Olr1250 ENSRNOG00000046504 ENSRNOT00000073845 1 1 1 60 4 1658804 1658825 ACTATTTCTGTGATCTCCTCCC 59 1658846 1658864 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235,ENSRNOT00000080442 3 2 2 85 1 215214980 215215787 CAGCCAGAAAGAAAGCTCC 59 215215836 215215854 CAATTCCGCTGTCATGGAC 59 NA Rattus norvegicus 81 LOC100910824 ENSRNOG00000047036 ENSRNOT00000073693 1 1 1 60 13 100214748 100214769 TATCAGCAAAGAACAACAGTGG 59 100214789 100214808 CAGTGTCATCTCAATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ece2 ENSRNOG00000001715 ENSRNOT00000044482 1 1 1 80 11 83961506 83961622 ACCTCATTGACAAGATCGGT 59 83961445 83961464 CTACTGCCTTTAGCACTTCC 58 NA Rattus norvegicus 81 Cebpb ENSRNOG00000057347 ENSRNOT00000083876 1 1 1 196 3 164424632 164424650 CTTCTACTACGAGCCCGAC 59 164424810 164424828 AGAGGTCGGAAAGGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cebpb ENSRNOG00000057347 ENSRNOT00000083876 2 1 1 197 3 164424632 164424650 CTTCTACTACGAGCCCGAC 59 164424810 164424829 AAGAGGTCGGAAAGGAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbmxl2 ENSRNOG00000021946 ENSRNOT00000044538 3 1 1 83 1 171420635 171420654 TTCGTCACCTTCGAGAACC 60 171420700 171420719 CCTTGATGGCTTACCATCCA 60 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932,ENSRNOT00000076578 3 2 2 82 13 82739433 82742022 GCTTCAAACCTAAGCCTCC 59 82739369 82739387 GACAGGTAGGACGTTTGGA 59 NA Rattus norvegicus 81 Cdhr4 ENSRNOG00000029586 ENSRNOT00000050702 1 1 1 80 8 116776577 116776595 CAGTCAAGACTGGGACCTC 59 116776638 116777552 GTCATTGTTGAGGACACCTC 59 NA Rattus norvegicus 81 Olr427 ENSRNOG00000031763 ENSRNOT00000047764 2 1 1 60 3 21209447 21209468 ATCCTTTCATCTATAGCCTGAG 57 21209487 21209507 TCCCTTAACTTCCTCAAACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp7a ENSRNOG00000022896 ENSRNOT00000034983 1 1 1 80 7 123985602 123986377 GAACGGGATTCACAAGTGG 59 123985540 123985559 AATGTGTCTACTTCGAGCCT 59 NA Rattus norvegicus 81 Cby1 ENSRNOG00000013892 ENSRNOT00000018787 1 1 1 80 7 120896384 120896402 GGAACTCCTACCATGAACC 57 120896445 120896542 CCCACTAATCACTGAGTCTG 58 NA Rattus norvegicus 81 Ankrd42 ENSRNOG00000009664 ENSRNOT00000068402 2 1 1 80 1 157422354 157425562 GGAGTCTAAGAAGACCATCAC 58 157422294 157422314 AGTTGACACTCTAACTTCTCC 57 NA Rattus norvegicus 81 Rn60_13_0873.1 ENSRNOG00000051337 ENSRNOT00000075901 2 1 1 60 13 82366340 82366358 ACCGATTACATGGCTTTCC 58 82366298 82366319 TGAAGGTGAATCTTGAACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892,ENSRNOT00000082669 1 2 2 100 17 76399818 76401197 TTTCAGAGGAGTTGATCTCAG 57 76394928 76394946 AAGCTTCACTGTTTCCCAG 58 NA Rattus norvegicus 81 H1fx ENSRNOG00000027722 ENSRNOT00000033687 3 1 1 73 4 119889834 119889852 CCAAGAGAAGGAAGAACCG 58 119889779 119889797 CTTACGGATCGTCTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpse2 ENSRNOG00000043120 ENSRNOT00000067274 1 1 1 104 1 262040922 262047188 CACCACAACCACAACTATGTC 60 262040838 262040856 GAGCTTGTCCCTGAGAGTC 60 NA Rattus norvegicus 81 Rnf186 ENSRNOG00000017244 ENSRNOT00000023358 3 1 1 60 5 157417597 157417615 TCCTGCCTTTCATCTACCC 59 157417639 157417657 GCTAGGGCAATGACAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npr1 ENSRNOG00000014684 ENSRNOT00000020307 1 1 1 80 2 189848107 189848128 CTAGAGAATGAGAGTATCACCC 57 189847951 189848068 TAGAAAGAGCATTCCCTTGAC 58 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004,ENSRNOT00000063875 2 2 2 80 20 30838112 30839229 TGCTTGGCTTTCAGAACCT 60 30838050 30838070 CTTGGTCTTGCAGAAGTATGG 59 NA Rattus norvegicus 81 RGD1311783 ENSRNOG00000020076 ENSRNOT00000027196 1 1 1 80 1 266461383 266461401 GATGCCATCTTGCACTCAG 59 266461687 266462431 AATAGCTTCTTGCTGGTACTG 58 NA Rattus norvegicus 81 Nyap1 ENSRNOG00000050511 ENSRNOT00000059602 1 1 1 87 12 21773013 21773031 ATCCACCATGATCGAGGAG 59 21773081 21773846 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 2 1 1 80 14 23456232 23456251 AAGCTACTCAGAAGTTCCCA 58 23456293 23457308 TAGGACTGTCTCCATCTGAC 58 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 1 1 1 80 1 72738773 72738791 TAAGCTACTTCGGCTGCTC 60 72738835 72751437 CGGACAAGACAGGAGATGG 60 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 3 1 1 81 1 72751511 72751529 CAAGTGCAGAAGCTCAAGG 59 72751574 72751694 AAAGGGTTCCTTTGTGCTC 58 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 2 1 1 80 8 12357786 12358822 AGTTTGGAACACCTAAGCC 58 12358865 12358884 AATTTGTACAACGCTGACAC 57 NA Rattus norvegicus 81 Col16a1 ENSRNOG00000031475 ENSRNOT00000067663 3 1 1 81 5 148263205 148264194 CCGGTTTCATTTGACCTTCAG 60 148264236 148264255 GTAAGATCTCACAGCAGCCT 60 NA Rattus norvegicus 81 As3mt ENSRNOG00000020081 ENSRNOT00000027223 3 1 1 80 1 266487092 266489956 ACCAAGTCCTGAAGTACGG 59 266489997 266490018 GTGACTTGATGTCTTCTGACAC 59 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927,ENSRNOT00000023239 1 2 2 60 1 153733414 153733433 AATTTGGTGTACCGCTTCTG 59 153733373 153733393 ACTGCTGATAAAGAAGGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim3 ENSRNOG00000018356 ENSRNOT00000024850 2 1 1 80 1 170456566 170456584 GTATGCAGTATCTGCCTGG 58 170450971 170456522 CTGGAGACATCTTTCGCAG 58 NA Rattus norvegicus 81 Cdh16 ENSRNOG00000012222 ENSRNOT00000016419 2 1 1 80 19 569518 569538 CTACAGAAAGCCTGCATACAG 59 569580 570251 AGGGTAGTGGTAGCTTGAG 58 NA Rattus norvegicus 81 Ssx2 ENSRNOG00000049427 ENSRNOT00000071047 1 1 1 80 X 709350 709820 GGCATGTAAGGCATTCGAG 59 709862 709882 GTGATCTTCTCTGAATGGCTG 59 NA Rattus norvegicus 81 Pdlim5 ENSRNOG00000016419 ENSRNOT00000022387 3 1 1 80 2 247933352 247985442 ATCTCTAGTCTGAAAGATGGTGG 60 247933294 247933315 GATTCCATCAATGCTGAGAACC 60 NA Rattus norvegicus 81 Acbd7 ENSRNOG00000016480 ENSRNOT00000064609 3 1 1 110 17 78905879 78906004 CATCAACATTGCATGTCCAG 58 78905596 78905614 GAAATGTAGGCACCCATGG 59 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 1 2 2 80 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958580 94958600 AGTCCCAGATATTGGTCAACC 60 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253,ENSRNOT00000065448,ENSRNOT00000022331 3 4 4 80 1 200592618 200596353 ACCAATGAGGAATACTTGGAC 58 200592558 200592576 AGAACAAGAGCTCCTTGTG 57 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947,ENSRNOT00000090393 2 2 2 85 5 118510130 118510150 TGGAACTTATCAATTGAGCCC 58 118500888 118510086 TTCTTGTTCCATTTGATGGTCC 59 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 2 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473209 AGAGACTTCAACAGCTCCAG 60 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000089233 3 1 8 109 3 100771186 100815562 CTTCATTGAGCCCAGTTCC 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000080190 1 1 8 105 3 100787162 100787183 CTGCCTTGATGTTTACTTTGAC 58 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1559731 ENSRNOG00000004265 ENSRNOT00000005659 3 1 1 80 X 4734790 4737955 CATCCTGCAGATCTTCCCT 59 4737997 4738017 GTACTGACCAGGAATCTACCA 59 NA Rattus norvegicus 81 Agtr1b ENSRNOG00000010640 ENSRNOT00000014178 3 1 1 104 2 105224193 105224211 TTGAAAGAAGCCCAGAGCT 59 105151012 105151032 TTCAGTAGAGGAGTTAAGGGT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tnfaip3 ENSRNOG00000049517 ENSRNOT00000074583 2 1 1 81 1 14405972 14405990 GTACTTGATGGTGCTGGAG 58 14405591 14405927 TTCATCTAACTTGGCAGCA 57 NA Rattus norvegicus 81 Mmp14 ENSRNOG00000010947 ENSRNOT00000075610 1 1 1 80 15 33081836 33081854 ACGGACAAGATTGATGCAG 58 33081895 33082415 GAAGCGGTAGTACTTATTTCCC 59 NA Rattus norvegicus 81 Brat1 ENSRNOG00000001236 ENSRNOT00000064726 2 1 1 85 12 16021072 16022225 TGAAACTTCAGCATTGTCCC 59 16021006 16021024 GGTAGCTTTCAGGATGCAG 58 NA Rattus norvegicus 81 Olr1408 ENSRNOG00000047426 ENSRNOT00000040534 3 1 1 60 10 36518030 36518049 CCCTTCATTTACAGCCTGAG 58 36518072 36518090 TATGGAGGAGCCTTGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779,ENSRNOT00000084590 1 2 2 80 9 94159916 94160629 ATACAGCAGGTCATCACCA 58 94160672 94160691 GATAGCACTGTACTTGAGGG 58 NA Rattus norvegicus 81 Crtc2 ENSRNOG00000056337 ENSRNOT00000092144 3 1 1 80 2 189622235 189622255 CTCACACTATGACCCATTTGG 59 189622297 189622667 GAGGTGAGTGAAGTCCTGG 59 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000066292 3 1 2 75 1 89785902 89785920 TTGACAGACGAAGACAAGC 58 89786709 89786727 GTACCCATCAACACAAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07049184.1 ENSRNOG00000046140 ENSRNOT00000071169 1 1 1 96 5 108935617 108935638 TGGTGATAATCTAGTTGCTCTC 58 108935694 108935752 GTAGTAGGCGTAATGGTCAC 58 NA Rattus norvegicus 81 Alkbh4 ENSRNOG00000001428 ENSRNOT00000001939 3 1 1 94 12 23569659 23570539 GGAGGAAGCAGGACTATGG 59 23569583 23569602 TACCTTCTGGCTAAAGCCAG 60 NA Rattus norvegicus 81 Mapk7 ENSRNOG00000002412 ENSRNOT00000057864 2 1 1 80 10 47772800 47772818 ACACGACAATATCATCGCC 58 47771460 47772758 AGTACCACGTAGACAGATCTG 59 NA Rattus norvegicus 81 AABR07027819.1 ENSRNOG00000031902 ENSRNOT00000041103 2 1 1 60 17 45286299 45286318 GGTGAACTCAGAAGACAAGG 58 45286258 45286279 ATAATTGGCCCTAATAGCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd8 ENSRNOG00000037580 ENSRNOT00000027937 1 1 1 80 1 88117370 88118021 CTATGCCAAGAAGCGAGGT 60 88117308 88117326 CTGTCTTCTGGCTTCTGCT 60 NA Rattus norvegicus 81 Tatdn2 ENSRNOG00000042482 ENSRNOT00000038964 2 1 1 96 4 145665576 145665594 CCTTGGTAATTCACTGCCG 59 145665654 145667760 GTGAAGCAGTGCCTATGGA 60 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 2 2 2 80 6 125664859 125668801 GTGCCTAGATATTGATGAATGTCG 60 125664802 125664822 CACGTACAGGAATAGGATCCA 59 NA Rattus norvegicus 81 Pwwp2a ENSRNOG00000003936 ENSRNOT00000067013 2 1 1 80 10 29330390 29330410 TTACAGTGTCTGACAGACCAC 60 29330451 29333226 CTAATGTCTTTGTGCTGCCC 60 NA Rattus norvegicus 81 Ahsp ENSRNOG00000020165 ENSRNOT00000027297 1 1 1 80 1 199720366 199720389 TCAGAGCAATAAGGATCTGATCTC 60 199720427 199720674 AGAGGGTCATCAAAGACCTG 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293,ENSRNOT00000090922 2 2 2 85 X 118289470 118289488 TCCTATTGAGCATAGCCGG 59 118289532 118314560 CTGAAACTCCTATTGATATTGCCC 60 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000059748 ENSRNOT00000077571 3 1 1 124 17 44794236 44794255 GTAAGGGCAACTATTCGGAG 58 44794342 44794360 CGTCTTCTTGTTGTCCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrg1 ENSRNOG00000049918 ENSRNOT00000074993 1 1 1 60 9 10952414 10952432 CAAACATAGAGGAGCAGCC 58 10952456 10953417 CAGGAGGAACAGGGTTCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316,ENSRNOT00000091595,ENSRNOT00000048306 1 3 3 124 11 84425645 84426262 TGTGAACTGCAGAAGACTAGAG 60 84426347 84426365 ACACGATGGACAGGATGAG 59 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 2 2 2 80 X 71615838 71616845 ACCTTGAGGTCAGTGAACG 60 71615776 71615795 AATCGTAGGGAGATGTGCTG 60 NA Rattus norvegicus 81 Rsph6a ENSRNOG00000061526 ENSRNOT00000090515 2 1 1 89 1 79960261 79962052 AACCTCAGCCTGTATGAGC 60 79962105 79962123 CAGAGACTCCAGGATGGAC 59 NA Rattus norvegicus 81 LOC100910682 ENSRNOG00000050481 ENSRNOT00000071629 2 1 1 60 5 137786048 137786067 CATTGTCACCTTGATCCACC 59 137786088 137786108 ACTGAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911795 ENSRNOG00000022462 ENSRNOT00000030579 3 1 1 80 15 57715837 57715858 GGATATTCTGTCTCCCTAAGAG 57 57715897 57717513 CAGTATGAGTTTGGTAACCGA 58 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 2 1 1 66 20 14595035 14618792 TATGAGGACAACCAGACGA 58 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Tbp ENSRNOG00000001489 ENSRNOT00000002038 2 1 1 80 1 57498759 57504817 CTGAATATAATCCCAAGCGGT 58 57504858 57504877 CAGAACTGAAGATCAACGCA 59 NA Rattus norvegicus 81 Ublcp1 ENSRNOG00000004477 ENSRNOT00000006063 3 1 1 80 10 30106175 30106196 CTCAGTACCTCAAGGAGATAGC 60 30104676 30106138 TCTTAGATAGATACCGTTCCCAG 59 NA Rattus norvegicus 81 Olr546 ENSRNOG00000047728 ENSRNOT00000046809 3 1 1 60 3 75184560 75184579 GTATGTTACTTGGGTGGCCT 60 75184519 75184541 CCAGTCTGAGTAAACCTATTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000002793,ENSRNOT00000067439 1 3 3 80 14 25934963 25941092 CCAATCAGGATGTGATCAAGG 59 25941134 25941152 ATTGATAGAGGGCAGCAGG 59 NA Rattus norvegicus 81 Tmem229a ENSRNOG00000039464 ENSRNOT00000060476 3 1 1 60 4 52349231 52349251 CCGCTTAATTTCATGGGTCTC 60 52349191 52349210 CACTAAGAAACAGCCAACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcamr ENSRNOG00000004393 ENSRNOT00000029694 3 1 1 86 13 47550775 47551575 GAGAGGACCTCTCAGAAGAC 59 47551624 47551642 CTCACCAGGGAGCTTATCC 59 NA Rattus norvegicus 81 Cdr2l ENSRNOG00000025815 ENSRNOT00000035865 2 1 1 80 10 103942370 103942388 AGAAACAAGGAGCTGGAGG 59 103942432 103942710 GGTCAGGTACTCGATCTCC 59 NA Rattus norvegicus 81 Asz1 ENSRNOG00000060343 ENSRNOT00000091311 1 1 1 80 4 45406849 45406870 GAGGAACAAGTCTTGAAGTGTG 60 45375958 45406811 AGTCATAAGTCTCCTACAAGCA 59 NA Rattus norvegicus 81 Nid1 ENSRNOG00000002461 ENSRNOT00000003349 1 1 1 80 17 90555895 90556707 GATTGGAAGACGAACTCGG 58 90555833 90555851 GGTATGCTTATGTGGGTGG 58 NA Rattus norvegicus 81 Rcor3 ENSRNOG00000046445 ENSRNOT00000073588 1 1 1 80 13 110856312 110863855 CTGAATTCGATCCAGGTGC 59 110856250 110856271 GGATACTGTGATAAGGAGACCA 59 NA Rattus norvegicus 81 LOC317588 ENSRNOG00000030580 ENSRNOT00000049046 3 1 1 80 X 137935373 137935392 TAGGCAAATGGTTGGAACTG 59 137935432 137938782 GGGTTTCCATTTCATGTATGTC 58 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 3 2 2 88 3 97774668 97774686 GGGACATCCTTCTCCACAC 60 97774738 97813069 TGGCAGGTTTCCTAACCAG 60 NA Rattus norvegicus 81 Polr2j ENSRNOG00000001430 ENSRNOT00000001941 1 1 1 84 12 23588300 23590059 ACATCATTAAATCGCAGCTG 57 23588235 23588253 ATGATCTTGTGCTCCAAGG 58 NA Rattus norvegicus 81 Vom1r96 ENSRNOG00000058628 ENSRNOT00000080669 2 1 1 60 4 121870829 121870848 GGTCTAAGCCCATTGATCTG 58 121870871 121870889 ACAAGCAGCATTAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo7 ENSRNOG00000010427 ENSRNOT00000014002 3 1 1 80 1 174690077 174691263 TGAGACTGAGGAACTAGGG 57 174691305 174691325 GCTTGTTTAGCTAGGATCTCC 58 NA Rattus norvegicus 81 Nkx2-2 ENSRNOG00000012728 ENSRNOT00000017364 3 1 1 106 3 141409631 141410629 CCTCCAATACTCCCTGCAC 60 141409543 141409561 TCTCCTTGTCATTGTCCGG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 3 1 1 68 8 37704183 37704202 CTGCAATATGGTACATCGCT 58 37702374 37704155 GTCAAGACTCAATAAAGAGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 3 1 1 96 5 122512578 122512596 TCTGTACAGTGTCCCACTC 58 122512656 122519360 TTGGTGGGACCTAATTGGT 59 NA Rattus norvegicus 81 LOC100910308 ENSRNOG00000046308 ENSRNOT00000002890 3 1 1 80 14 33974001 33974025 AGATAATGATTCCTGGAGACTATGG 60 33973626 33973967 TCTTTGAGATCCCGATAAGACTG 60 NA Rattus norvegicus 81 Sestd1 ENSRNOG00000012603 ENSRNOT00000016837 2 1 1 80 3 64076839 64076859 CCAGTTGACAGAAGACTTTGG 59 64075416 64076798 AACTTCTCAAAGACCAGCCT 59 NA Rattus norvegicus 81 Olr578 ENSRNOG00000050566 ENSRNOT00000042725 1 1 1 60 3 75752169 75752190 ATGTGTCTTTGTAGATGCTGAG 59 75752130 75752149 CTTGTATCGATCAAAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adora3 ENSRNOG00000015788 ENSRNOT00000021236 2 1 1 80 2 208531471 208531490 CTTCCATCATGTCCTTGCTG 59 208531528 208533431 TGGTAACCGTTCTATATCTGACTG 60 NA Rattus norvegicus 81 RGD1563782 ENSRNOG00000042711 ENSRNOT00000063878 1 1 1 81 11 86918848 86918951 ATTACTGAGGTGTGGGACG 59 86918785 86918803 TTTGACGACCTACCAGGAG 59 NA Rattus norvegicus 81 LOC679087 ENSRNOG00000016330 ENSRNOT00000061333 3 1 1 60 5 25253971 25253993 CCTTCAAGGAGGTTAAATGACAG 60 25254012 25254031 TTCTGGGAGACTTTGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdp1 ENSRNOG00000003831 ENSRNOT00000005167 2 1 1 80 6 123902475 123902493 TACAACTCCAAAGCCCTCC 59 123904978 123906081 GTAGTTAAACTGAGCTGAAGAGAC 59 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 2 2 2 80 7 126661150 126667203 TCATCACAGACACCCTCTC 58 126667247 126667265 GGGACTCATCTGTACTGGT 58 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000081015,ENSRNOT00000084918 3 2 3 81 20 3736929 3736947 GAACAAGTCCCTCCTGAGG 59 3736723 3736885 CCTTCAAGTGCTTCAAGGTG 60 NA Rattus norvegicus 81 Stath ENSRNOG00000054677 ENSRNOT00000085234 1 1 1 83 14 21958273 21959058 GGTCTCCATGATTACTGCTG 58 21957140 21957158 ACATATCGGCGATAACGTC 58 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 1 3 3 80 7 120874277 120874299 GACTATGAGTTGGAGAAGAAGTC 59 120873685 120874241 CTCTTCCTTCAGTTTCTTGACTC 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 2 3 3 80 7 120874285 120874306 AATTGAGGACTATGAGTTGGAG 58 120873692 120874245 TTCAGTTTCTTGACTCCGTC 58 NA Rattus norvegicus 81 Cmtm3 ENSRNOG00000010691 ENSRNOT00000014234 3 1 1 256 19 838011 838033 GAAATAGAGAAGACAGACTGGAC 59 834879 837530 AATGAATGAAAGGCCCGAC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 1 2 2 98 1 212539865 212539883 TTTGCTATGGCACTTCTGG 58 212538619 212539803 GATCTTGTGCCGAAGTAGG 58 NA Rattus norvegicus 81 AABR07001888.1 ENSRNOG00000060716 ENSRNOT00000071177 3 1 1 83 1 61220187 61220205 TCCCTTTCTCCTCATGAGC 59 61220246 61220273 CTAGAGTCTTTGTGAAACCTATTCC 59 NA Rattus norvegicus 81 LOC100911147 ENSRNOG00000042719 ENSRNOT00000045085 3 1 1 80 1 71629617 71629897 ATGGCTTTCAAGATCAGTACTC 58 71629936 71629956 AATGGGAATGACCAAGTTAGG 58 NA Rattus norvegicus 81 Abr ENSRNOG00000056837 ENSRNOT00000080703 1 1 1 80 10 64604371 64604760 TCGGAATGGAAAGAGTTACCT 59 64604311 64604332 TGTAGTTTCTGAATCGCTTCTC 59 NA Rattus norvegicus 81 Gbp1 ENSRNOG00000023943 ENSRNOT00000045855 2 1 1 80 2 248403784 248404363 AAATGAAATTAGGGTCTCGGC 59 248404405 248404423 AGCAACGGTTAGATGACAC 58 NA Rattus norvegicus 81 Frs3 ENSRNOG00000014328 ENSRNOT00000019404 1 1 1 150 9 15302481 15303279 AGTTCAAGGTGACAAATGTGG 59 15302351 15302369 TTGGAGTCGTAGCCATAGC 59 NA Rattus norvegicus 81 Potec ENSRNOG00000016992 ENSRNOT00000052342 1 1 1 80 17 89602725 89602744 GATTGAATTGCAAGACCCTC 57 89586173 89602685 TCTAGTTCAGATTCTGATCTGC 58 NA Rattus norvegicus 81 Mpped1 ENSRNOG00000010834 ENSRNOT00000014720 1 1 1 80 7 124747113 124749169 TCCATGAAGGGTATGGAGTC 59 124749211 124749230 CAGGCTGATAGTTCACAGTG 58 NA Rattus norvegicus 81 Adamtsl4 ENSRNOG00000049385 ENSRNOT00000074156 3 1 1 81 2 197808717 197808736 AAGATCCTGTGGATTCCTGC 60 197808478 197808675 CTCGAAGTGCAAGGTAATTGG 60 NA Rattus norvegicus 81 Derl1 ENSRNOG00000005551 ENSRNOT00000007484 1 1 1 80 7 97759698 97759716 AGCTCGCTATTATCAGCCC 59 97750826 97759654 TGAACGGCCTCCATATCTG 59 NA Rattus norvegicus 81 Ucn3 ENSRNOG00000017759 ENSRNOT00000023887 3 1 1 101 17 69960168 69965615 AAGTCCTCTTACAGGGAGC 58 69965679 69965698 TGTAGAACTTGTGGGAGAGG 59 NA InUTR Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 3 1 1 92 X 14635107 14635453 ATACAACATCTGATGGCACC 58 14635034 14635055 GTTATAGGACAATTGCTACTGC 57 NA Rattus norvegicus 81 Tlr5 ENSRNOG00000022067 ENSRNOT00000004821 3 1 1 60 13 101384699 101384717 TATCTCCAACATCCAGGCA 58 101384739 101384759 TCTGCTTACTAGACATACCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkmyt1 ENSRNOG00000003657 ENSRNOT00000004936 1 1 1 83 10 13069753 13069771 GGAGATCCTCGCTACATGG 59 13069818 13070477 GATGGTGAGACCCAGACTG 60 NA Rattus norvegicus 81 RGD1564664 ENSRNOG00000055564 ENSRNOT00000088555 2 1 1 94 3 82855483 82855501 CAAGAAGTCGTTCCTGCAG 59 82855407 82855425 TCCTCAGTTTGCAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 2 3 8 81 6 128053949 128053968 TAAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000033897 2 1 8 80 6 127958483 127963479 GTATCAAGTCCTACTAAAGAGCC 58 127963515 127963537 GGTATGAGGTCTTCTATGAAGGT 59 NA Rattus norvegicus 81 Olr215 ENSRNOG00000050698 ENSRNOT00000036261 2 1 1 60 1 170888061 170888079 CAGGAAGAAAGCCCTTGTC 59 170888103 170888121 CCCATACCACATTCCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811,ENSRNOT00000007371 1 2 2 80 6 33191101 33191119 AGATCGTGTCTCCAAGGTC 59 33191162 33192484 ATTCCATTCACCATGTCCTG 58 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 2 2 2 80 1 197259444 197259462 CTACTACATTGGCCTCACG 58 197259506 197261529 GCAGCAATATTGTTCTGGG 57 NA Rattus norvegicus 81 RT1-N3 ENSRNOG00000000795 ENSRNOT00000001035 2 1 1 80 20 3169650 3170157 AAGAAGGCAGGTGAAAGAG 57 3170322 3170342 CACAACAATCTTGCTAGAGTC 57 NA Rattus norvegicus 81 Net1 ENSRNOG00000017765 ENSRNOT00000023945 2 1 1 80 17 70016241 70016389 ATCCCTCTACACGAAGATCTG 59 70016430 70016449 AATGTGACCGATCTGTTCCA 60 NA Rattus norvegicus 81 Nsg2 ENSRNOG00000020644 ENSRNOT00000028069 2 1 1 80 10 15909758 15909777 ACAAGAACAGAATACCAGCC 58 15872012 15909716 AATGGTGACCGTAAATTCGG 59 NA Rattus norvegicus 81 Nsg2 ENSRNOG00000020644 ENSRNOT00000028069 3 1 1 80 10 15909757 15909776 CAAGAACAGAATACCAGCCG 59 15872011 15909716 GAATGGTGACCGTAAATTCGG 60 NA Rattus norvegicus 81 Notum ENSRNOG00000036680 ENSRNOT00000054947 2 1 1 80 10 109835231 109835250 CCAGTTCAAGGAAGGAGAGG 60 109834738 109835188 ACTACGAACACTGGACAGC 60 NA Rattus norvegicus 81 Hnrnpa0 ENSRNOG00000039876 ENSRNOT00000061231 3 1 1 67 17 6910015 6910033 GGTGAAGAAGCTGTTCGTG 59 6910064 6910082 AGAAGTGCTCGATCAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065406.1 ENSRNOG00000005718 ENSRNOT00000007522 1 1 1 80 6 125864339 125864357 AAAGACTGAAGGCCAAGAG 57 125864402 125864420 TAAGAGTCTACCAGGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC684683 ENSRNOG00000033994 ENSRNOT00000042537 1 1 1 60 3 73335631 73335650 CTTGACCTTCAGAATGACCT 57 73335673 73335691 GTCAGCACAGTAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027458.1 ENSRNOG00000049193 ENSRNOT00000074609 1 1 1 60 17 31947576 31947597 TCATCTATCAGGTTTCCAACAG 58 31947537 31947555 GACCCACTACCACTGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krr1 ENSRNOG00000004035 ENSRNOT00000063917 2 1 1 80 7 54756257 54758807 TGAGAACCAAGATGAGGGA 58 54758851 54758869 CTGGGATTGTCCTCTTTGG 58 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340,ENSRNOT00000007710 2 2 2 80 5 86427117 86427135 TGGAGAAGCTGTTTCTCCA 59 86417539 86420110 CAGTTCTTAACCTCCTTAGCAG 59 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 2 2 2 88 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789125 AGTACAATTTGTGGCCAGC 59 NA Rattus norvegicus 81 Samd7 ENSRNOG00000027995 ENSRNOT00000033449 2 1 1 80 2 116247202 116247222 TTACAGAACAGCATCTTCGAG 58 116243555 116247161 CATGCTGAGATACCTGAGAC 58 NA Rattus norvegicus 81 Zg16 ENSRNOG00000016857 ENSRNOT00000022758 1 1 1 80 1 198484201 198485178 ATAATAGGTCTCCAGGTGCG 59 198484140 198484159 AAAGATCTCCTCCAGGTCTC 58 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000090417 1 1 2 86 1 78818873 78818891 GACCTACGCCAAATGTGAG 59 78818941 78821692 GTTGGACATGGCTTGTCAC 60 NA InUTR Rattus norvegicus 81 Slc35f1 ENSRNOG00000000412 ENSRNOT00000000468 3 1 1 83 20 34391704 34393693 GAATTCAGTTAGCCATCATGGA 59 34401193 34401212 TAAAGCCAACATACAGCAGC 59 NA Rattus norvegicus 81 Apbb1ip ENSRNOG00000017803 ENSRNOT00000024272 2 1 1 80 17 90146494 90149134 ATCTCTTGACCCAGAGTTTAGG 59 90146435 90146457 CACTGAAGTTAAACTCTTCTCGG 60 NA Rattus norvegicus 81 Tmem200b ENSRNOG00000032018 ENSRNOT00000047917 1 1 1 60 5 150080735 150080753 CATGTGATCATCACGGTGC 59 150080777 150080795 GGTCCAGAGACTTGGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhx1 ENSRNOG00000002812 ENSRNOT00000003799 2 1 1 81 10 71848576 71848596 AATGTAAATGCAACCTGACCG 60 71846841 71848534 CCGAAACATCGGAAGAAGTC 59 NA Rattus norvegicus 81 Tmem175 ENSRNOG00000000044 ENSRNOT00000000050 2 1 1 80 14 2092041 2092062 GATGCCTTACTATCCATCATCG 59 2091026 2091831 GTCAAACTGCTGTTCTGGT 58 NA Rattus norvegicus 81 Olr854 ENSRNOG00000014263 ENSRNOT00000019099 1 1 1 60 5 75909594 75909615 AAGCCTTCTTCATCAAACTCAC 59 75909555 75909573 GCACTCCATAAAGCAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 1 2 2 80 10 37164357 37166077 GGCTTCTCTAGGCTGTATCTC 60 37164297 37164315 ACTGGATTGTGCTGATGGT 59 NA Rattus norvegicus 81 Wbscr22 ENSRNOG00000033700 ENSRNOT00000044449 3 1 1 80 12 24677378 24677861 AGCAAAGAAGTTCTACCTCTG 58 24678162 24678180 TCTGCTTCCTGACTTTCAG 57 NA Rattus norvegicus 81 Ist1 ENSRNOG00000015144 ENSRNOT00000020365 2 1 1 82 19 41983271 41983591 CTGTGAATGATAGGCTAATGC 57 41983632 41983653 GGCAATTTCAATCAGGTATCTC 58 NA Rattus norvegicus 81 Als2cr11 ENSRNOG00000012637 ENSRNOT00000017517 3 1 1 80 9 65841299 65841318 GAAGAGCTTGAAAGAACGAC 57 65834000 65835128 ATCACTGTAATCCACTAACTCG 58 NA Rattus norvegicus 81 Rn60_10_0627.1 ENSRNOG00000011753 ENSRNOT00000015673 2 1 1 60 10 62967480 62967501 GTCACAACAGTTAAGAACAAGG 58 62967441 62967460 TCTCAGACACATAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipg ENSRNOG00000018694 ENSRNOT00000025257 2 1 1 80 18 70924383 70924402 GAGCCTCTATTGTTGCTTCC 59 70920639 70924341 GGTTTATGGTGCTCATCTCG 59 NA Rattus norvegicus 81 Zfp830 ENSRNOG00000007578 ENSRNOT00000009970 3 1 1 60 10 70119053 70119072 ATCAGATGGACAAAGAGTGG 57 70119093 70119113 GAGATAGTGTTGACTTGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344,ENSRNOT00000078148 2 2 2 87 2 116403807 116407090 TCATGCAAGGAAACACAGTG 59 116403739 116403757 ATGATAGGTCAGGGTGCTG 59 NA Rattus norvegicus 81 Lax1 ENSRNOG00000028250 ENSRNOT00000029533 2 1 1 142 13 50164806 50165666 AGGTCAAGCAACTTAGAAAGAG 58 50165768 50165787 TTCTTGTGATCTCTGGAGGG 59 NA InUTR Rattus norvegicus 81 Zfp951 ENSRNOG00000037421 ENSRNOT00000048419 2 1 1 80 14 6358610 6358630 GATCCTTCCCAGAAGAGTCTC 59 6358353 6358570 TTCCCAGTAAGAGCCTATAGC 59 NA Rattus norvegicus 81 RGD1308117 ENSRNOG00000008351 ENSRNOT00000011277 1 1 1 80 15 51837355 51837373 GTAGGAGAACAGGAGTCCA 58 51836933 51837311 CTCCATACTACCCACCTCC 58 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879,ENSRNOT00000083100 2 2 2 80 14 36748242 36748261 CAGAAACGCTGTGTAGTGAG 59 36748302 36750700 TTACCCTCATCCTCTTCTGAG 58 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784,ENSRNOT00000087085 2 2 2 80 20 20656056 20656075 CTGATCTGTAGTTGCGAGTG 59 20650350 20656013 TGGAAGGTGAACCTCACTG 59 NA Rattus norvegicus 81 Spon2 ENSRNOG00000046246 ENSRNOT00000075130 1 1 1 90 14 82869026 82869629 TGACTGAGATAACCGCCTC 59 82869683 82869701 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 LOC100909423 ENSRNOG00000046510 ENSRNOT00000071070 2 1 1 60 3 158985592 158985613 TTCATTGACCTCTGTTACTCCA 59 158985553 158985571 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 3 2 2 82 X 14506269 14530135 CATTACTACTGGAAGATGCGT 58 14530179 14530197 TGGCTAAGATGTTGCAACG 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 3 2 2 80 4 56437991 56438009 TGATCAGCTGGAAGAGCTG 60 56434572 56437950 CATGCTTTACTCCCTTTCTCTG 59 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 3 2 2 81 5 50131602 50131620 GTCACTGGTGTATGCTGTG 59 50131237 50131558 ATAGGTCACCTGGTACACTG 59 NA Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 1 1 1 60 17 49516678 49516698 GATGGCAAAGACCCTAATCAG 59 49516720 49516738 CCACATCTGAGGCCTTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r6 ENSRNOG00000052154 ENSRNOT00000079924 1 1 1 60 1 60045596 60045617 TGCTATACTTTATGGACACAGG 58 60045637 60045656 GAAGGAGGTATGAGAGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg14 ENSRNOG00000011873 ENSRNOT00000016274 2 1 1 80 15 24348166 24349310 AAAGCTGTGCAACAGTGAG 59 24348104 24348123 TTTGCGTTCAGTTTCCTCAC 59 NA Rattus norvegicus 81 Tufm ENSRNOG00000018604 ENSRNOT00000025203 1 1 1 80 1 197905857 197905878 TTGAAGAAAGGAGATGAGTGTG 58 197905918 197906048 GTGGAACATCTCAATGCCTG 59 NA Rattus norvegicus 81 Dhx38 ENSRNOG00000014619 ENSRNOT00000019810 2 1 1 80 19 42119451 42119824 CACCATCATCAGAGACAACAG 59 42119866 42119884 AAGTACTGGGTCAGCTGAG 59 NA Rattus norvegicus 81 Ranbp6 ENSRNOG00000053859 ENSRNOT00000078998 3 1 1 60 1 247985328 247985347 ACATTCCTCTTAGATGCCGT 59 247985287 247985305 CAGCCATTTGTCTCACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl6ip5 ENSRNOG00000006818 ENSRNOT00000010185 1 1 1 81 4 129574466 129574484 GTGTAGTGAGCAATCTGCT 58 129574529 129593038 CTCAGAAACCCAACGACTG 59 NA Rattus norvegicus 81 LOC688320 ENSRNOG00000046260 ENSRNOT00000072947 3 1 1 80 10 109912732 109912844 AGGTATCCCAGATGGTAGC 58 109912670 109912689 GAGCAACTATTCTGGAGACG 58 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530,ENSRNOT00000080068 3 2 2 121 12 22970513 22970531 TAGACACAGTGCTGACTGG 59 22972766 22973714 CTCATCCACCATACCCTGG 59 NA Rattus norvegicus 81 Npff ENSRNOG00000047739 ENSRNOT00000074497 3 1 1 108 7 144127450 144127468 GACAGGATCCAGACTCCTG 59 144127258 144127379 CATTTCTGCCAAACCTCTGG 60 NA Rattus norvegicus 81 Tsnaxip1 ENSRNOG00000018954 ENSRNOT00000025686 3 1 1 80 19 37812359 37812477 GATCATTGTTTACTGAGGATGAGG 59 37812512 37812534 CCTTCTCACTGTTATACTGTTCC 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 2 3 3 81 1 198230548 198230566 ACCAGAAGGCAGATGATGG 60 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Pcsk4 ENSRNOG00000016405 ENSRNOT00000022358 2 1 1 80 7 12247617 12247635 CAAAGGTTACCAGGAGGCT 59 12247675 12247914 TACTGGTCATCAGGAAAGATCTG 60 NA Rattus norvegicus 81 Zfp579 ENSRNOG00000016608 ENSRNOT00000022349 2 1 1 211 1 72399210 72399228 AGGGAAGGAAGAAAGGAGC 59 72400431 72400449 AGTAAGGGAAGCGGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273,ENSRNOT00000004078 1 2 2 80 13 50128475 50129628 TGGTGAAAGGTATCATTGACAG 59 50129667 50129687 GTCCATCATTGGTTCCATCAC 59 NA Rattus norvegicus 81 Snrpep2 ENSRNOG00000034206 ENSRNOT00000040164 2 1 1 61 1 141503966 141503989 GCAGATAGAGGGTTGTATTATTGG 59 141503928 141503948 CTGCATCATCTAATACGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000002862 1 1 2 80 14 33550968 33553183 TTTCAGAAGATTCAGACGGG 58 33550907 33550927 GCATGATGTAAGCCATTTGAC 58 NA Rattus norvegicus 81 RGD1559951 ENSRNOG00000003227 ENSRNOT00000004303 1 1 1 63 X 11748872 11749492 TGCTTGGACTTCAGTTCCA 59 11748827 11748845 CGTTGATCCCAAGATTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 1 2 2 80 15 34457520 34457774 TCATCAGCATCCCATACTCC 59 34457459 34457477 GTTCGAAGCTCATGTGCAG 60 NA Rattus norvegicus 81 Mocs3 ENSRNOG00000025067 ENSRNOT00000039403 1 1 1 60 3 164987499 164987517 GCCTCAAGTAGAGGTGGAC 60 164987541 164987559 CAGACTCAAAGGGATGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361642 ENSRNOG00000029978 ENSRNOT00000050333 1 1 1 60 1 168831018 168831036 GGTTTGGCTTTCACATCCC 59 168831058 168831078 ACAAGTAGGTAAAGGTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clcnka ENSRNOG00000052368 ENSRNOT00000089184 3 1 1 80 5 159939035 159939053 CTGTGGTTGGAATGGTGTC 59 159937828 159938993 CAGCATCCAGAACTTCATGAC 59 NA Rattus norvegicus 81 Thnsl1 ENSRNOG00000033076 ENSRNOT00000045984 2 1 1 80 17 88099325 88099917 CCGACTTACTTGGCTAAAGC 59 88099959 88099978 GGTGACATCTGGTAAAGCTC 58 NA InUTR Rattus norvegicus 81 RGD1561212 ENSRNOG00000024283 ENSRNOT00000043949 2 1 1 82 5 120877525 120878422 AAGAGTTGTCCAGATGCCT 59 120877461 120877482 GTGTTTCAAGTCTGACATTGAG 58 NA Rattus norvegicus 81 Olr454 ENSRNOG00000056255 ENSRNOT00000090772 1 1 1 60 3 73115162 73115182 CAGTCTGCTAGGGAATATCAC 58 73115203 73115222 TGTATGGAGTCGGGAATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 3 2 2 81 7 12269769 12270473 GTACAGGAGACACTCCTGTC 59 12269707 12269725 TCCTCGTCAAATGACAGCT 59 NA Rattus norvegicus 81 LOC100125367 ENSRNOG00000005558 ENSRNOT00000007341 3 1 1 112 13 111891039 111891502 AACGCATGGGATCTTTCTC 58 111891577 111891596 GGTGTTGACATGAGATCTGG 58 NA InUTR Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485,ENSRNOT00000088132 1 2 2 60 20 3891248 3891268 CTAGTAAAGCCCAACTGTACG 59 3891289 3891308 CACTAGGAGGAATCAGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 2 2 2 80 1 142162683 142162701 TACCTAATGCTGGACCGAG 59 142161672 142162640 CACAGAAATTTGGCTCCTGG 60 NA Rattus norvegicus 81 LOC100910597 ENSRNOG00000050668 ENSRNOT00000074466 2 1 1 60 1 169637378 169637396 GCTGAGAAATGGCTTAGGT 58 169637419 169637438 ACAATAATTCCTCTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 2 2 2 80 4 88862989 88864463 AGATTCCAAGGTTGGAACTC 58 88864506 88864524 ATGAGCTCCATTCCTATGC 57 NA Rattus norvegicus 81 Rpl37-ps1 ENSRNOG00000048958 ENSRNOT00000043523 2 1 1 60 17 87020247 87020266 TAAGAGGCGAAACACTACCG 60 87020286 87020307 TCTTCGGTAGACGATCTTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 1 2 2 80 1 64126172 64126192 TGATGTATACAGTAGCCCTGG 59 64126230 64126356 TTTGTACTTCCGTCTCTATCTGG 60 NA Rattus norvegicus 81 AABR07017745.1 ENSRNOG00000048707 ENSRNOT00000071740 3 1 1 75 15 30570510 30570529 TTACTCCTAGGCCTTCACCT 60 30570705 30570723 GACTTCGTTTCACCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr853 ENSRNOG00000018357 ENSRNOT00000024722 1 1 1 60 5 69784846 69784865 GACTTTCCCAGTATCCAGAG 57 69784887 69784906 AAGTACATGATGAGGCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 1 1 1 60 5 126087287 126092302 CTACAGGCCTCCTAAGGAG 58 126087245 126087263 CAGTGGACAGTACATGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Olr468 ENSRNOG00000056132 ENSRNOT00000085420 1 1 1 60 3 73302741 73302761 ACCCATGTACTTCTTCCTCAG 59 73302781 73302801 AACATTGGTGGCATAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491,ENSRNOT00000089783 2 2 2 80 19 38062180 38077422 ATCCTGTTGTGAAGCTCCT 59 38077463 38077484 AATATCTATCATCGGCTGTTCC 58 NA Rattus norvegicus 81 Gemin7l1 ENSRNOG00000034168 ENSRNOT00000040934 1 1 1 60 4 78954727 78954745 GAAGGTGTACACGTGACTG 58 78954685 78954705 CGTAGAAGTTAGCTACATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aven ENSRNOG00000006419 ENSRNOT00000065752 1 1 1 89 3 104113881 104113899 AGTGAGTCACTGGTTCGAG 59 104113952 104115685 TAAAGGAACTGCGGTCTGG 60 NA Rattus norvegicus 81 Gatsl2 ENSRNOG00000001484 ENSRNOT00000002033 2 1 1 80 12 25602982 25603816 TGTTCTACTCCAATGGAGTG 57 25602921 25602941 TGAGTGAGAAAGAGAAGAAGC 58 NA Rattus norvegicus 81 Hspa14 ENSRNOG00000015212 ENSRNOT00000020854 3 1 1 80 17 78751061 78753397 TGACATTAACAAGGTTGTGCTG 60 78753434 78753456 GCTGGGAAGAGATCTTTAATCAG 59 NA Rattus norvegicus 81 Ppp3ca ENSRNOG00000009882 ENSRNOT00000047975 3 1 1 81 2 242181015 242184114 CTGATGAAGCCATCAAAGGA 58 242184157 242184176 TCGTTAATTCGGTCTAAGCC 58 NA Rattus norvegicus 81 Vom1r73 ENSRNOG00000052492 ENSRNOT00000078886 3 1 1 60 4 87758736 87758756 TTTCTTGTAGGAGTCATGCTG 58 87758774 87758796 GATGTCTGCACAAGATAATCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt112 ENSRNOG00000021132 ENSRNOT00000028695 3 1 1 89 1 222168212 222168336 GCGGACACCTTAAACTTGG 59 222168389 222168407 CACATGGTGCATCTTCCTC 59 NA Rattus norvegicus 81 Swi5 ENSRNOG00000022860 ENSRNOT00000030558 3 1 1 83 3 11309711 11310948 TAATAGCCGAGGGCTATCG 59 11309646 11309664 GCGACACATCCTTGATGTC 59 NA Rattus norvegicus 81 Cryba1 ENSRNOG00000008700 ENSRNOT00000011608 1 1 1 80 10 65166731 65167232 ATACAGTGTGGAGCTTGGG 59 65167276 65167294 TCCGTGATGGTCACATTCC 60 NA Rattus norvegicus 81 Tmem241 ENSRNOG00000023412 ENSRNOT00000029274 2 1 1 81 18 3527497 3527515 TGAAGTTCTCACCTGTGGG 59 3510281 3521516 GAGGAAGAGGGCACTACAG 59 NA Rattus norvegicus 81 Sox12 ENSRNOG00000007514 ENSRNOT00000009852 2 1 1 67 3 147865180 147865198 CACAACGCTGAGATCTCCA 60 147865131 147865149 GGAATCTTCTCCGAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 2 2 2 81 1 74994096 74998985 TGAAACAACTGTGGTACTTTGG 59 74999023 74999045 GTAGCTGAGGATTCTGTTATTGG 59 NA Rattus norvegicus 81 Awat1 ENSRNOG00000026231 ENSRNOT00000076053 3 1 1 102 X 70409810 70410447 CCATTACAATCCTGAAGACTAAGG 59 70410508 70410526 CAGAAGTTGCAGAAGGCAC 60 NA Rattus norvegicus 81 Hrasls5 ENSRNOG00000023528 ENSRNOT00000032123 2 1 1 92 1 222907821 222908315 AACCTACAAATGACTCAGCGA 60 222908369 222908387 TTCGGGCCTGTTCTAATCC 60 NA Rattus norvegicus 81 Galnt14 ENSRNOG00000007951 ENSRNOT00000010613 1 1 1 80 6 24803322 24813058 GTCAAAGAGGATTACACAAGGG 59 24803263 24803285 GGCAGACTCAATATAGTTGAAGG 59 NA Rattus norvegicus 81 Olr845 ENSRNOG00000059811 ENSRNOT00000085133 2 1 1 60 5 69478059 69478079 CACACCCATGTACTTCTTCCT 60 69478019 69478040 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179,ENSRNOT00000085126 1 2 2 80 15 3477688 3477707 CTACAACTCCCATCAAGCTG 58 3473842 3477647 TCTCGTCAAATACCTCTTCCC 59 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 1 1 1 60 17 43675627 43675645 ACGTGGAGAAGAACAACAG 58 43675585 43675605 ACTCCCTTATTCACAAGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000072791 2 1 3 85 9 111279611 111280814 TGAAATGTCATCTGTGGCCT 60 111280861 111280880 GGAGGATCTTCGTAGGTGTG 60 NA Rattus norvegicus 81 Grxcr1 ENSRNOG00000038891 ENSRNOT00000059439 2 1 1 87 14 41722348 41785644 GTGTTACAGCAACCATCAGC 60 41722280 41722298 TCTCAAAGGTCGTCCTCAC 59 NA Rattus norvegicus 81 Olr6 ENSRNOG00000045783 ENSRNOT00000072404 3 1 1 60 1 70481160 70481180 GAGATGTGCTATGTGTCTGTC 59 70481201 70481220 AGAGTCCATTCCATAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maoa ENSRNOG00000002848 ENSRNOT00000066674 3 1 1 80 X 6571247 6571265 TTCCTGTGGTATGTGAGGC 59 6569019 6571204 TACAAATTTCCGTTCCTGGC 59 NA Rattus norvegicus 81 Casc4 ENSRNOG00000016357 ENSRNOT00000044158 2 1 1 81 3 113855400 113860610 TCCTGCTGCTTTAAAGAAGC 59 113860652 113860672 CTGTCCAGTTAGAAGATGGGA 59 NA Rattus norvegicus 81 RGD1564937 ENSRNOG00000030962 ENSRNOT00000068366 2 1 1 80 8 55193515 55193534 TGATAGGCAACTGGAACCAG 60 55192353 55193472 AGTGTCCAAACTGGGAAGG 60 NA Rattus norvegicus 81 Mab21l2 ENSRNOG00000031398 ENSRNOT00000049461 3 1 1 60 2 185851665 185851683 AAGGGCTGGAAGTCATCTC 59 185851623 185851642 CCCATTTGGTTGAGGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 M1ap ENSRNOG00000007288 ENSRNOT00000009701 2 1 1 80 4 113811900 113835423 CAATGATGAGAGTTCCATCCTG 59 113835463 113835482 AAGAAGACCTCCATGCTGAC 60 NA Rattus norvegicus 81 AABR07027451.1 ENSRNOG00000046284 ENSRNOT00000074147 1 1 1 60 17 31813688 31813708 GATGACACAAACTCCAGTCTC 59 31813648 31813667 GCAAGAGATAGAGGCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563680 ENSRNOG00000004571 ENSRNOT00000006177 1 1 1 80 3 107229497 107229520 GTTATAAACAGTATGCTACGGGAC 60 107229557 107229927 GTTCACGATGCACTGATAGAC 59 NA Rattus norvegicus 81 Slc45a3 ENSRNOG00000007591 ENSRNOT00000010242 1 1 1 80 13 48761700 48762241 GACACTATGATGAAGGCATTCG 60 48762282 48762300 TGACCAGGGAGAAGAACAG 59 NA Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 3 1 1 80 4 157700507 157700999 TCCTGATGAAAGTGGTATCCT 58 157700447 157700468 TTCTATCTGATCCACTCAAAGC 58 NA Rattus norvegicus 81 AABR07020999.1 ENSRNOG00000026400 ENSRNOT00000035157 3 1 1 60 13 52413299 52413317 AATTTGCCCAAACCCTTGG 59 52413340 52413359 AACTGTATGAGCCTGAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 3 2 2 80 14 37121551 37121571 GAGACTCATGAGTTTCACCTG 59 37121612 37121907 GTTGCTGGTGATCCTTTCAG 59 NA Rattus norvegicus 81 Klf15 ENSRNOG00000017808 ENSRNOT00000024011 2 1 1 117 4 122369902 122369920 GATGTACACCAAGAGCAGC 59 122376595 122376613 TGACAACTCATCTGAGCGT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560017 ENSRNOG00000029262 ENSRNOT00000049695 1 1 1 60 3 94833090 94833111 AGAGTAATGCTGAACTTAAGGG 58 94833051 94833070 ACCTGGATGTGTTCAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc4 ENSRNOG00000018994 ENSRNOT00000025819 1 1 1 80 1 84985336 84985354 CATTCCGTTGGTCATTGGT 59 84983852 84985294 TAGTTAGAGCCTGTGGTAGAG 58 NA Rattus norvegicus 81 Ctxn3 ENSRNOG00000022957 ENSRNOT00000037529 1 1 1 60 18 52550988 52551006 CTAGACCCATATCGGAGCA 58 52551030 52551048 TCTCTAGACCTTCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dag1 ENSRNOG00000019400 ENSRNOT00000026327 1 1 1 96 8 116985260 116992792 TTATCAAGGTGTCTGCAGCA 60 116985183 116985201 TCAGTGTCAAGAGGAAGGC 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 1 3 3 80 12 25430554 25431721 GAGTCCATGTGTAAAGAGCTG 59 25431761 25431781 AACGACAAACACATCTGTCTC 59 NA Rattus norvegicus 81 Eaf1 ENSRNOG00000019559 ENSRNOT00000026525 2 1 1 80 16 7589207 7591329 CCATTCGCTATGACTTTAAGCC 60 7591369 7591388 TGACTTCATCTCCTTTGCCA 59 NA Rattus norvegicus 81 Fam173b ENSRNOG00000022347 ENSRNOT00000046325 1 1 1 80 2 84679160 84682244 GAAAGAGGAGAAACGCCTG 59 84682285 84682306 TGTCTTCAAACTGTCAGATTCC 59 NA Rattus norvegicus 81 Fam173b ENSRNOG00000022347 ENSRNOT00000046325 3 1 1 80 2 84684612 84685945 TATGGAAGGTCACCTTTGCA 59 84693303 84693321 GTTTCTTCTCCAGCTGTGG 59 NA Rattus norvegicus 81 Def8 ENSRNOG00000000264 ENSRNOT00000000281 3 1 1 81 19 56244149 56244167 TTCAACAAGCACCTTGGAC 59 56244211 56245604 GCAGAGTGTCTTCAGAAGTG 59 NA Rattus norvegicus 81 Atp13a5 ENSRNOG00000024127 ENSRNOT00000035049 3 1 1 80 11 75025359 75030612 ATGACTTGAGACAGCAATCAG 59 75030652 75030672 CTCTTACTGTGATTGTGACCT 58 NA Rattus norvegicus 81 Fam89a ENSRNOG00000019022 ENSRNOT00000025705 2 1 1 80 19 57503352 57514613 AAGGAGATGGTTGGTCTCC 59 57503290 57503309 GTACTCCTGAATGGACTCGT 59 NA Rattus norvegicus 81 Foxe1 ENSRNOG00000023497 ENSRNOT00000012637 3 1 1 60 5 61955426 61955444 CAAGAAGTGGCAGAACAGC 60 61955467 61955486 GATCTTGAGGAAGCAGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdsub1 ENSRNOG00000005990 ENSRNOT00000008168 2 1 1 80 3 45935478 45935576 ACTCAGCATACCAGGTACG 59 45935416 45935434 TGTCTTGTCCATCGAACCA 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 1 2 2 60 2 86474439 86475031 AGGACCTTCTGTCATTTACAG 58 86474399 86474418 AGACATTCACACTCCTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911163 ENSRNOG00000030018 ENSRNOT00000028058 3 1 1 80 15 35393597 35394076 CAGAGGAAGATCAATGACAGTC 59 35393538 35393556 GCCACAGGGATAATCTGCT 60 NA Rattus norvegicus 81 LOC686209 ENSRNOG00000047452 ENSRNOT00000074907 2 1 1 60 5 137776186 137776207 TCGCTATATGTTATCCACTCCA 59 137776225 137776246 AGGGCTATGCATAAAGTTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc6l2 ENSRNOG00000019175 ENSRNOT00000025965 2 1 1 80 17 1388887 1389882 AACTAGAAACACCTAGAGACCC 59 1389921 1389941 ACTCCTCATCACTCATGTCAC 60 NA Rattus norvegicus 81 Cebpd ENSRNOG00000050869 ENSRNOT00000074586 1 1 1 70 11 89008726 89008744 GAACGAGAAGCTGCATCAG 59 89008778 89008796 CTTTGAAGAACTGCCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntsr2 ENSRNOG00000049054 ENSRNOT00000071387 2 1 1 80 6 41921864 41923285 GATGATGGATGGACTAATGAGC 59 41923325 41923344 TGAGCTGACATAGAAGAGCG 60 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 2 2 2 80 19 1040079 1051241 CACTATGTGGGAAAGATCAAGTC 59 1040021 1040040 GATCTTGCCAGCTTGTTCTC 59 NA Rattus norvegicus 81 Zfat ENSRNOG00000025140 ENSRNOT00000068291 3 1 1 80 7 109121957 109123242 GACTAATCATCCAGAGGTCTCC 60 109121898 109121918 TTTCCAATTAGCCCTTTGAGC 59 NA Rattus norvegicus 81 Pramef8 ENSRNOG00000027278 ENSRNOT00000037875 1 1 1 84 5 162195614 162196451 TTGTTCAGGTACCTGAAGAC 57 162196498 162196516 GGGACAAGGAACTCAAGTC 58 NA Rattus norvegicus 81 Odf4 ENSRNOG00000004225 ENSRNOT00000005667 1 1 1 80 10 55515655 55515779 GACGATAAAGACCAGGAGCA 60 55515594 55515614 TGTGCCAATTTCCATTGAAGG 60 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000002542,ENSRNOT00000078394 2 2 2 68 11 88092356 88092374 GATTTCGAGAGGCCTTAGC 58 88092101 88092119 GTTGAGCTTCTAGCTCCTC 57 NA DesignNoJunction Rattus norvegicus 81 Podxl2 ENSRNOG00000016255 ENSRNOT00000021826 2 1 1 80 4 120792504 120792922 GGACTCTACTCAGGTGATCTG 59 120792444 120792465 ATGTTCTCTGTCATGTTCAGGA 60 NA Rattus norvegicus 81 Rps4y2 ENSRNOG00000031041 ENSRNOT00000043543 1 1 1 60 4 182746123 182746141 GTCCATGTGAAAGATGCCA 58 182746164 182746183 TCACGAAGATGTTGGAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr323 ENSRNOG00000021069 ENSRNOT00000028601 3 1 1 60 1 228524348 228524368 GCTGTTTCTCTTCCTTCTCCT 60 228524308 228524326 CATGATGAGCAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncdn ENSRNOG00000011751 ENSRNOT00000016230 3 1 1 86 5 144772317 144772335 AAGACTGCTTCTAGCTGCC 60 144770960 144772267 GGAGTTCCTTGGAGAGCTG 60 NA Rattus norvegicus 81 LOC606294 ENSRNOG00000000395 ENSRNOT00000000444 3 1 1 80 20 32199268 32199286 AAGCCAGACATTGTCTGTC 58 32196941 32199225 CTTCAGGAGTGTCTTCTGTG 58 NA Rattus norvegicus 81 Gbas ENSRNOG00000023919 ENSRNOT00000035621 2 1 1 82 12 30546863 30546881 CTCTGGAGGTATGAGGGAG 58 30545531 30546819 CGGAAACTTACAAATTCCTGG 58 NA Rattus norvegicus 81 LOC100911064 ENSRNOG00000060632 ENSRNOT00000078704 3 1 1 60 15 36213379 36213400 GACAGAGAAGAACATCATCTCC 58 36213340 36213362 AGTGATGAAGAAGTAGAGCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 1 2 2 80 17 1067901 1067920 CCCTACTACAACACCTGGAC 60 1065577 1067859 GTTCCAACTTCCATTGCCTG 60 NA Rattus norvegicus 81 St6galnac4 ENSRNOG00000048870 ENSRNOT00000072685 3 1 1 80 3 11616298 11617601 TAGCTACTGCAGTGAGAAGAG 59 11617641 11617661 TACATCTGACACTCATCCAGC 60 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 3 2 2 80 9 100970150 100971213 CAGAGGAAAGTCCAGATGC 58 100971257 100971275 ATACTTGAACACGTAGCCG 58 NA Rattus norvegicus 81 Gpx1 ENSRNOG00000048812 ENSRNOT00000073247 1 1 1 85 8 117117667 117117685 AATGATCTGCAGAAGCGTC 58 117117734 117117969 TTGCCATTCTCCTGATGTC 58 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 2 2 2 80 1 217027263 217027283 GACTTCTGCCACAGATTTCTG 59 217027321 217027951 CTTATTTACAATCCCTGCTGGAG 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660,ENSRNOT00000038748 2 2 2 80 3 121980958 121983657 GACCAGTATCTTTATGTTCCTCC 59 121980900 121980918 ATGGCAAGTAACAGTCACC 58 NA Rattus norvegicus 81 Cela1 ENSRNOG00000004725 ENSRNOT00000006351 2 1 1 80 7 142306285 142306303 GGGCTGTAATGTCTCCAGG 60 142305628 142306244 TAGGCAATGACATTGTTCATCC 59 NA Rattus norvegicus 81 Arhgap19 ENSRNOG00000048166 ENSRNOT00000071417 1 1 1 80 1 261028859 261030153 TCAGAAACTCTTTAAGGCCC 58 261028798 261028818 TTTGACACTTGAGTTCTGGAG 58 NA Rattus norvegicus 81 Klri1 ENSRNOG00000052803 ENSRNOT00000090813 3 1 1 81 4 163515728 163524519 AAGACAAGGACCCAAATCAG 58 163515666 163515685 CATGGTTATCATCAGCACCA 58 NA Rattus norvegicus 81 Dennd3 ENSRNOG00000010794 ENSRNOT00000014541 3 1 1 80 7 114798104 114802475 ACAAGATGAAGAATGAACTGCC 59 114802513 114802534 CAGCTGAAGGGTTAATCTTGTG 60 NA Rattus norvegicus 81 RGD1560028 ENSRNOG00000006782 ENSRNOT00000008947 2 1 1 94 4 96312638 96312657 TCAAAGGGCTTTCACAATGC 60 96320739 96326650 CATACTTAATCTCAAGTCTCTGCAC 60 NA Rattus norvegicus 81 AABR07053707.1 ENSRNOG00000017740 ENSRNOT00000023913 2 1 1 94 3 121492816 121492834 ACAGAAGCAGGATTCGGAG 60 121492892 121493033 ACAAGAACCACCAGGTGAG 60 NA Rattus norvegicus 81 Gje1 ENSRNOG00000012092 ENSRNOT00000016102 2 1 1 80 1 8885230 8885939 ATGAAGGATGTGTTAAACCTCC 59 8885171 8885189 CAAGGAAGAACATCCGCAC 59 NA Rattus norvegicus 81 Znrf1 ENSRNOG00000019028 ENSRNOT00000025716 2 1 1 134 19 43750729 43750747 ATGGTTACCAAGAGACCGG 59 43750845 43821781 GGCACTTGAAACCACTGTG 60 NA Rattus norvegicus 81 Prkag3 ENSRNOG00000017248 ENSRNOT00000023365 1 1 1 80 9 82001796 82004109 CAATGAATCTGGTCAAGTCGT 59 82001598 82001619 AGGTGGTTGTAAGTTTGTTGTG 60 NA Rattus norvegicus 81 Gsc ENSRNOG00000010605 ENSRNOT00000014204 3 1 1 84 6 128148027 128148045 GACAAAGTACCCAGACGTG 58 128147600 128147979 CTTAAACCAGACCTCCACC 58 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000060258 3 1 2 115 3 11825506 11825524 TCACCTATTGCAGCCTGAG 60 11825602 11825637 TAAATACCTGGGTCCCAAGG 59 NA Rattus norvegicus 81 Shisa4 ENSRNOG00000007369 ENSRNOT00000009712 1 1 1 88 13 52194317 52194335 ATGTACCCACCTAGTGGTC 58 52194020 52194265 ATATAGGGTGGAGGAGCTG 58 NA Rattus norvegicus 81 Oxgr1 ENSRNOG00000037884 ENSRNOT00000057564 3 1 1 60 15 105401825 105401843 CATTAGCTGCCCTCAACAC 59 105401783 105401801 AAGTTATTGCTGACGACGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 1 1 1 60 1 163797995 163805185 CTGGCATTGTCCAAGACTC 59 163805209 163805227 GCTGTTTACAGTGTTGCGT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07015057.1 ENSRNOG00000060518 ENSRNOT00000077306 1 1 1 81 14 46529354 46529372 GATCCCTACAACTCGGTGG 60 46525538 46529309 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 AABR07015057.1 ENSRNOG00000060518 ENSRNOT00000077306 2 1 1 82 14 46529355 46529373 GGATCCCTACAACTCGGTG 60 46525538 46529309 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 Erbb4 ENSRNOG00000014248 ENSRNOT00000019283 3 1 1 80 9 75060689 75060707 ATCACAGACTTTGGACTGG 57 75058585 75060646 TTTAATTGGCATCTTGCCAC 57 NA Rattus norvegicus 81 LOC100361492 ENSRNOG00000001466 ENSRNOT00000001990 2 1 1 80 1 258246886 258246905 GGATCAGAAACCACAAGCAC 60 258246947 258247896 CTGGACTTTAGCTGTGACCT 60 NA Rattus norvegicus 81 Tmem59 ENSRNOG00000009778 ENSRNOT00000013224 3 1 1 80 5 126794375 126794394 GCACAGAGCTTCATAACCTC 59 126794435 126796189 CGGCTTAGACTGGAATATGAC 58 NA Rattus norvegicus 81 Arcn1 ENSRNOG00000061108 ENSRNOT00000082687 3 1 1 80 8 49053144 49055260 TACTGCAACATACAGGTTACC 58 49053084 49053104 TAAGAAAGTGGTCTCTGTGGA 59 NA Rattus norvegicus 81 AABR07061068.1 ENSRNOG00000057187 ENSRNOT00000072325 3 1 1 60 4 103496039 103496058 GAGAGTCAGCTTCCATCTCC 60 103496077 103496099 GTGATGCCATTACTATGTAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 1 1 1 149 15 104191363 104191384 ATACTTGACAAAGGAGGACC 57 104191233 104191251 GATGGAAAGCTCTGGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 2 1 2 74 20 3821638 3821783 CTTGGAACCTCATTCGCAC 59 3821582 3821601 CCTAACTCTTTCTCACCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Dpy19l3 ENSRNOG00000021573 ENSRNOT00000039115 3 1 1 80 1 92011779 92019489 TGGATTAACTCCAATACACCGA 59 92011720 92011739 TCCTGTACACAGCTTGACTC 60 NA Rattus norvegicus 81 Herc6 ENSRNOG00000023969 ENSRNOT00000058626 1 1 1 80 4 88627381 88628137 GGATTTCCTCCTTGATAACCA 58 88627321 88627340 GAGCTTCTTGATGTGGAGAG 58 NA Rattus norvegicus 81 Cetn1 ENSRNOG00000016409 ENSRNOT00000021955 3 1 1 60 18 786342 786361 CTTCTTGGCTGTGATGACTC 59 786301 786321 CTTCAGGATTTCCTCTTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Urb2 ENSRNOG00000026853 ENSRNOT00000036042 3 1 1 80 19 56811024 56813795 TCTTACAGGTCCATGCATACC 60 56813835 56813855 TTAAACATTTGGGTGAGCAGG 59 NA Rattus norvegicus 81 RGD1310257 ENSRNOG00000014186 ENSRNOT00000018989 1 1 1 62 1 75354550 75354568 ATGTCCAACAAGTCCACAG 58 75347355 75347373 CTTGACAGTGATGAAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Fam161b ENSRNOG00000011112 ENSRNOT00000014814 1 1 1 80 6 108069832 108070601 ACAAACTCCAGGAATCAGAG 57 108069771 108069790 GAGAGGAAGACATCTGTAGC 57 NA Rattus norvegicus 81 Fam161b ENSRNOG00000011112 ENSRNOT00000014814 3 1 1 80 6 108069832 108070602 GACAAACTCCAGGAATCAGAG 59 108069772 108069791 AGAGGAAGACATCTGTAGCA 58 NA Rattus norvegicus 81 Rem2 ENSRNOG00000011646 ENSRNOT00000016020 2 1 1 102 15 33123171 33124246 CATCTGGGAACAGGGAGAC 60 33124312 33124330 GAAGCTTCGTCGATCTGTG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000075578 2 1 2 121 9 105944864 105946151 TCTCGCTATCTGCATCAGG 59 105946236 105946254 ATGCTGGGAGTTCAGTCTG 59 NA Rattus norvegicus 81 Themis2 ENSRNOG00000012965 ENSRNOT00000017340 3 1 1 80 5 150972588 150972943 AAGCACAGAATTCAGTGCTG 59 150972527 150972545 GGAGATGTGACTCAGTGGT 59 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 2 2 3 90 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146090 115146109 AGTAGGAACATGAGGAGCAG 59 NA InUTR Rattus norvegicus 81 Mir3571 ENSRNOG00000035523 ENSRNOT00000053646 1 1 1 60 18 2054964 2054988 CCATAGCATTCTATGTTCATATGGG 60 2055005 2055024 AATAGTGCCTACTCAGAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639,ENSRNOT00000089665 2 2 2 80 16 39985831 39987115 AACATGAAGCTACTCCAAGC 58 39985770 39985789 GATGCAACCTTTGTCTTCCT 59 NA Rattus norvegicus 81 Fam222b ENSRNOG00000029570 ENSRNOT00000045107 2 1 1 80 10 65402022 65413041 TTCAGAAATGGGACACTACAC 58 65413083 65413101 CCTTCTTAGCATACGCGTC 59 NA Rattus norvegicus 81 Fam181a ENSRNOG00000048412 ENSRNOT00000075399 1 1 1 60 6 128975583 128975602 CGTAGTTCTGAAGCCTATCC 58 128975624 128975643 AAAGACGTTGAAGATGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm20 ENSRNOG00000014705 ENSRNOT00000054685 3 1 1 80 1 274575176 274580814 AGCATTCCTCTAGGAGTGG 58 274580858 274580876 CTCGCTTGTGTAGAACAGG 58 NA Rattus norvegicus 81 Rn60_X_0744.1 ENSRNOG00000048213 ENSRNOT00000076109 1 1 1 60 X 73581734 73581752 CCTGCTGAACGATTACACC 59 73581776 73581794 CTCCTCCCACCCAAATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr84 ENSRNOG00000036834 ENSRNOT00000055279 2 1 1 81 7 144935990 144936709 AACCTCAGGTGAGTCTCCA 60 144935927 144935948 ATCGATAGCCCAATACAGACTC 60 NA InUTR Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 3 1 1 63 3 176281596 176281616 AGAACTACATCCTCATGCAGG 60 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256,ENSRNOT00000056221 2 2 2 81 7 119841361 119841379 GTGAAGACATGGAAGCGAC 59 119841424 119842214 GAGGCTCTTTGTCAGTGGT 60 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 3 1 1 85 7 12344747 12344765 TCCAGGTTAAGAGCTCAGC 59 12342975 12344699 GACTTCATTCTGAGAGGCCA 60 NA Rattus norvegicus 81 RGD1560987 ENSRNOG00000022882 ENSRNOT00000032787 2 1 1 81 14 51439166 51439185 CTTAGGTGGCAACCTTGAC 59 51439225 51439248 CTTCAGGTTGATGATGTAGATACC 59 NA Rattus norvegicus 81 Olr463 ENSRNOG00000060217 ENSRNOT00000082357 3 1 1 60 3 73235691 73235711 TCCTCTTTGCATTGTTTCTGG 59 73235732 73235751 ATCATGCCCAAATTACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4b2 ENSRNOG00000027655 ENSRNOT00000038297 1 1 1 80 4 156113338 156127165 ATGGTTTCAGGTAAAGTCTGG 58 156127204 156127225 GAAGTCAGTTGTAAAGTAGCAG 57 NA Rattus norvegicus 81 Ltb4r ENSRNOG00000020399 ENSRNOT00000027647 1 1 1 60 15 34452395 34452414 CTGTGTCACTATGTCTGTGG 58 34452434 34452455 TCATGATAGTGATAAGCAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.1 ENSRNOG00000050693 ENSRNOT00000073385 1 1 1 60 11 29087802 29087820 TATGGCTGTGGCTATGGTG 60 29087844 29087862 ACCTTCTACAGCACAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf13 ENSRNOG00000015822 ENSRNOT00000066380 2 1 1 96 1 124803196 124803214 CTCTGTCTCACTGTCGGTC 60 124772952 124772970 ACTTCTTGTTGCACTCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Cct8l1 ENSRNOG00000050369 ENSRNOT00000073925 2 1 1 60 4 6045400 6045418 TGCCACAAGGTTTACAGGA 59 6045358 6045379 GTTCCCACTCAAACATTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000007866 2 1 5 80 8 6152391 6152411 GCTACAGATGGAGAAGGAGAG 60 6140379 6152352 CCATTTAACACTTCCTGTGGTC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000065953 2 1 2 85 3 6780896 6780914 AGATGAAAGGCCTGGAGTC 59 6780960 6782364 TTTAAGTTAGCCCTTGAACTGC 59 NA InUTR Rattus norvegicus 81 Krtap14l ENSRNOG00000042680 ENSRNOT00000064058 3 1 1 60 11 28735601 28735620 CAGATCCCTGAATTGTGGAG 58 28735560 28735581 GTAGGTTCTAGACCCATAACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 2 1 1 81 4 153784937 153785584 GAGCCTACAGTAGTAGACGAG 59 153785627 153785645 CCTCCTTCCCTGTGATCAG 59 NA Rattus norvegicus 81 Zfp688 ENSRNOG00000018379 ENSRNOT00000024858 1 1 1 81 1 198866644 198868415 CTCCGAGAGGAGATACTCCA 60 198866582 198866600 AGCTGAGCAGGAATGTCTG 60 NA Rattus norvegicus 81 Cts8l1 ENSRNOG00000048693 ENSRNOT00000073585 2 1 1 80 17 4063826 4063846 ATAACAGGGAGAATTCCTTGG 58 4063885 4064000 TGAATTCTTCATCAGTCAGGTC 58 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 2 1 1 69 10 75190726 75190744 CTCAGGAACCAGGAGATGC 60 75190658 75190694 CATCCCTGTTGCAAATTGCT 60 NA DesignNoJunction Rattus norvegicus 81 RGD1559972 ENSRNOG00000031273 ENSRNOT00000041326 2 1 1 60 11 82366302 82366320 CTTGAAGAGGAACCAGAGC 58 82366260 82366281 GACCAACGTCCATAATTTATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061614.1 ENSRNOG00000032820 ENSRNOT00000048672 2 1 1 80 4 136078837 136078857 TGAGGAAGAAGTAGAGGAACC 59 136078899 136078955 GCTCCTCTAAATGTTCCGG 58 NA Rattus norvegicus 81 Tubgcp6 ENSRNOG00000006028 ENSRNOT00000007954 3 1 1 80 7 130082125 130082227 CTTCAAAGTAGTGACCAAGCTG 60 130082066 130082086 TTGTTGAAGTTGATCCGAAGC 60 NA Rattus norvegicus 81 Stim2 ENSRNOG00000002956 ENSRNOT00000004006 2 1 1 80 14 59244205 59272259 ACGAGAGTGATGAGTTTATCAG 58 59244146 59244166 TATCTTCTCTGTGCAGATGAC 57 NA Rattus norvegicus 81 Slc9a8 ENSRNOG00000008354 ENSRNOT00000012175 3 1 1 80 3 164202842 164205717 CATTGTCCTCACCAACACG 59 164205760 164205779 GCTTGTGAGAATGTTTGCCA 60 NA Rattus norvegicus 81 LOC680624 ENSRNOG00000029763 ENSRNOT00000043227 3 1 1 159 11 12276132 12276727 GTGGTAGTTCGCAGTAGCT 60 12276850 12276868 GGAAGGATGCCTCAGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Hira ENSRNOG00000045770 ENSRNOT00000075164 2 1 1 80 11 86230065 86230572 CATCATGGATATTTCCTGGACTC 59 86230007 86230025 AAATCAAGGAACGCCACAG 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000032885 ENSRNOT00000048429 2 1 1 60 18 62476531 62476550 GATGCCAACAAGAACAAAGG 58 62476490 62476511 TTTCCAAATACTCCATCAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 1 2 2 80 9 121712376 121712396 GGTCTACGGGATAATAATGCA 58 121710267 121712334 TCTTCTGGTCTGATCCCAG 58 NA Rattus norvegicus 81 Ccl27 ENSRNOG00000039530 ENSRNOT00000060594 3 1 1 81 5 58159553 58160676 GAGAAGCAAGAAGCCTTGC 60 58159490 58159508 GTAGTCTGGTTGGGAGTGG 59 NA Rattus norvegicus 81 RGD1561118 ENSRNOG00000034060 ENSRNOT00000040561 1 1 1 60 10 76274623 76274641 TGTAGCAAAGCCTGAGGAC 60 76274581 76274599 TTGAAAGGCGTCTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb21 ENSRNOG00000033479 ENSRNOT00000040016 1 1 1 60 18 30589043 30589064 TTACAGACGTGAATGACAATCC 59 30589085 30589103 TGGATAGGGCTCATAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1214 ENSRNOG00000031929 ENSRNOT00000071356 2 1 1 60 8 40449619 40449640 CTTTGATCCTTTCCAACATCCT 59 40449660 40449679 CTGAAGGCTTTCGATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem222 ENSRNOG00000008564 ENSRNOT00000011357 1 1 1 80 5 151465733 151467022 TTGTTTCGGAAGACAACATGG 60 151464376 151464394 GCCCACTAGCGTATACCTG 60 NA Rattus norvegicus 81 Thpo ENSRNOG00000050172 ENSRNOT00000073743 1 1 1 83 11 82851597 82851847 CTAGGAACCCAGCTTCCTC 59 82851894 82851912 AAGCAGTTGTTGCAAGCTC 60 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 3 1 3 81 4 163440923 163440943 ACTGGATTCTTTCGAAAGAGC 59 163440557 163440880 GCATCTCCGTTATCCTTGG 58 NA Rattus norvegicus 81 Smpdl3b ENSRNOG00000042326 ENSRNOT00000067905 3 1 1 82 5 150929969 150931906 CAAAGAAGGTGCCTTCTATTCTG 60 150929909 150929929 AGTACAGATTGGTGTTGAGGA 59 NA Rattus norvegicus 81 Ankrd1 ENSRNOG00000018598 ENSRNOT00000025258 3 1 1 80 1 254732429 254732447 TGCTTAGAAGGACACTTGG 57 254731166 254732385 GGATTCCAGCATATCTCGG 58 NA Rattus norvegicus 81 Tmem44 ENSRNOG00000001726 ENSRNOT00000002353 1 1 1 80 11 73747258 73747276 GAATACCTCCTTCAGGCCA 59 73747317 73748651 GGACAGAATGATGATAGCAAGG 59 NA Rattus norvegicus 81 Phgdh ENSRNOG00000019328 ENSRNOT00000056173 3 1 1 81 2 200491752 200491771 TAGAGGAGATCTGGCCTCTC 60 200491254 200491708 CTGTCATTGAGCAAGCCTG 59 NA Rattus norvegicus 81 Mthfd2 ENSRNOG00000010833 ENSRNOT00000014603 1 1 1 80 4 115007708 115007726 GCACACTCCCAAAGAACAG 59 115007349 115007664 ATGAGGTTTGGAATGCCAG 58 NA Rattus norvegicus 81 Fndc5 ENSRNOG00000030238 ENSRNOT00000047152 1 1 1 92 5 147325927 147326254 AGAACAAAGATGAGGTGACCA 59 147326308 147326326 ACATGAAGAGGACCACGAC 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603,ENSRNOT00000078987 3 2 2 80 9 92662975 92662994 GAAGTCAACAGAGTCTTCCA 57 92663034 92663341 GAACATACTCACACTTCAACTG 57 NA Rattus norvegicus 81 RGD1561636 ENSRNOG00000032847 ENSRNOT00000049811 1 1 1 60 4 59014304 59014322 TAAAGTTCAAGGTCCGCTG 58 59014262 59014282 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499781 ENSRNOG00000039315 ENSRNOT00000020660 2 1 1 80 3 11813740 11813995 TTACAGAACACTACTGAGATCTACC 60 11813684 11813705 GTGTAGGAAAGGTCTAGGAAGG 60 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 1 1 1 68 10 14620592 14622774 GGCCTATACAATTTACTGCCA 58 14620544 14620562 AACTTCTTCGCTTGTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Notch2 ENSRNOG00000018835 ENSRNOT00000025718 1 1 1 80 2 200307894 200308668 CAGGAGATAATAGGCTCTAAGGT 59 200308707 200308726 GTTCTTGAAGCACTGGTCTG 59 NA Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 2 2 2 80 14 38010392 38012932 GGACAGAAGACAAGGAAGG 58 38012974 38012994 ACTTTGTGTAAAGGGAGACTG 58 NA Rattus norvegicus 81 Hnrnpul1 ENSRNOG00000020683 ENSRNOT00000028100 3 1 1 80 1 82513931 82514394 CAGTATCAGCAGTATGCCCA 60 82513870 82513890 GTCGTAGTTCCCGTAGTAAGG 60 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588,ENSRNOT00000044893 2 2 2 80 7 117659246 117659264 TGGCTTCTTCATCTCCCTG 59 117659307 117659446 ACATACTTCGGGCTGTTCTC 60 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 90 8 39379836 39379854 TTACCATGGTAACCTCCCA 58 39378997 39379782 AGGTCAAGGTTAACCTGTG 57 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000061753 ENSRNOT00000086709 2 1 1 60 3 74766582 74766602 GTCATCATGTCACAGAAAGTC 57 74766542 74766560 AGGCACTGAACAGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 1 2 2 80 1 80345147 80345806 CAAGAGAATTGAGGTGATGGT 58 80345087 80345105 TCGTTGTACTTCTGGTTGG 57 NA Rattus norvegicus 81 Auts2l ENSRNOG00000034287 ENSRNOT00000044800 3 1 1 81 12 27629400 27629418 GACAGTGAAAGCGCTAGTG 59 27629463 27647013 AAGGAGCTGAACTATCGCT 59 NA Rattus norvegicus 81 Tsen2 ENSRNOG00000060175 ENSRNOT00000081957 2 1 1 80 4 147471745 147478950 CCTAGAAGAGGCTTTCTTCC 57 147481742 147481761 TTCACTATGGTCAAAGGCTC 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 1 2 2 80 18 15674293 15675028 ACTACACATAGAGTCGGGAG 58 15674232 15674251 CATTCACGTTTGTACCTCCT 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 3 2 2 80 18 15667617 15670321 CTGAAGTTGGTTAAGGTTCTGG 59 15667558 15667578 GAACTCAGCTTTGTTCCTCAC 60 NA Rattus norvegicus 81 AABR07012635.1 ENSRNOG00000053190 ENSRNOT00000087593 3 1 1 82 2 200820328 200820347 TAACAAGGAGGCTCCAAGAG 59 200806169 200820283 GAGGCAGCATTCTGATGTC 59 NA Rattus norvegicus 81 LOC100361705 ENSRNOG00000049755 ENSRNOT00000048351 2 1 1 60 3 16571969 16571990 CCAAAGTGTCAGTACATCTAGC 59 16572010 16572029 CTCTCCTGGTTTCTGTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361705 ENSRNOG00000049755 ENSRNOT00000048351 3 1 1 60 3 16572065 16572083 AGCATCTGGTATCCCTGTC 59 16572107 16572125 GGTGAGGGTGAAGTCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zadh2 ENSRNOG00000016239 ENSRNOT00000021729 3 1 1 129 18 80940037 80940055 CTATGCAGAAGCTGGTGGT 60 80940145 80946161 TTAATACCAACGAATCGGTTCC 59 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 3 1 1 62 X 124515487 124515506 ATGGTATTTGATGGAACGCG 59 124513288 124515462 CCCTTGGACACATAGTAGC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100360056 ENSRNOG00000032130 ENSRNOT00000044231 1 1 1 60 1 183763600 183763621 CCTACTATACCCAGGTTTACCA 59 183763561 183763579 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360056 ENSRNOG00000032130 ENSRNOT00000044231 2 1 1 60 1 183763599 183763621 CCTACTATACCCAGGTTTACCAG 60 183763561 183763579 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdrd9 ENSRNOG00000053631 ENSRNOT00000086594 2 1 1 80 6 136636260 136648555 GAAACTTCTAGGCTTGTTCTGTC 60 136648594 136648613 TTCCACTCGTAGGGTTTCTC 59 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850,ENSRNOT00000064836 1 2 2 80 1 8839728 8839746 GTGGGATACAGATCCCTCC 59 8834857 8839685 TACTTGTTACACCTGTGCTG 58 NA Rattus norvegicus 81 Rn60_X_0749.1 ENSRNOG00000003008 ENSRNOT00000004016 3 1 1 60 X 74057900 74057918 GGCATGACTCTTGGTATGG 58 74057941 74057960 AAGGCTTAAGCTTATCCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Celf4 ENSRNOG00000014503 ENSRNOT00000061151 1 1 1 81 18 17702196 17702215 TGTAACCTGCTCATCTACCA 58 17698990 17702152 CCACAAACTCGAAAGGGAG 59 NA Rattus norvegicus 81 Rn60_X_0735.1 ENSRNOG00000051070 ENSRNOT00000076184 3 1 1 60 X 72561857 72561878 GATGTTGCAAAGAAACTAGGAG 58 72561818 72561836 AGGCCTACTTGTCATCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl1 ENSRNOG00000009643 ENSRNOT00000012812 3 1 1 84 10 86712036 86714573 AGAGATACGCTCCTTGCTC 59 86714621 86714639 GCTTGTGCCTTTCCTTCTC 59 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139,ENSRNOT00000041961 1 2 2 80 18 17329420 17331614 GCAAATCTCTGCGAAGGAC 59 17331658 17331676 GTTCAGATGTGCCAACCAG 59 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 1 1 1 80 1 28126321 28155761 AGGACAGCTTTGATTTCATAGG 59 28155798 28155820 GTTGTAGTTGTAAGTGGGATGTC 60 NA Rattus norvegicus 81 Cad ENSRNOG00000026474 ENSRNOT00000039709 2 1 1 80 6 26659845 26659863 GTCACCTTTACTGCACTCC 58 26659693 26659803 AACAGATGAGACATCTGATCC 57 NA Rattus norvegicus 81 Faf1 ENSRNOG00000008523 ENSRNOT00000011765 2 1 1 80 5 129646954 129646974 TAATGATGAGACTCATGGCTG 58 129647015 129700293 CTTCACGTTCATCCTCATCC 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 2 1 1 80 1 274634567 274634586 TTGAGAAGACGTTAACACCC 58 274634629 274640027 AATCCCTTAACATCTCCGC 57 NA Rattus norvegicus 81 Syt4 ENSRNOG00000017333 ENSRNOT00000023594 3 1 1 80 18 24178140 24178161 TTCAGGGATTGAATTGTCAGAC 59 24176341 24178100 CGTCCAGAAGACTTCTTAGC 58 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240,ENSRNOT00000082970 3 2 2 80 X 128584072 128584093 CTACTGAGCTACTGAAAGACTG 58 128584133 128584866 CTGTTAGAGCTTCCTCTCCA 59 NA Rattus norvegicus 81 Ccdc136 ENSRNOG00000007100 ENSRNOT00000060309 3 1 1 80 4 56684225 56684245 GTGCAGAGATGGAATTGAAGG 59 56684285 56686684 GGTGCAGTTCATCTTGTATCC 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000072206,ENSRNOT00000076142 2 2 3 81 1 32574331 32581224 CGTCAGAAAGAGGTGAATGAG 59 32581265 32581285 CTATGATACGATGGTCCACCT 59 NA Rattus norvegicus 81 Rd3l ENSRNOG00000043031 ENSRNOT00000065971 3 1 1 83 6 136549315 136549333 TACCGAGCAAAGACAACTG 58 136548952 136549269 AGTTCTCGAAATCTGCTGAG 58 NA Rattus norvegicus 81 Csnk2a2 ENSRNOG00000011933 ENSRNOT00000016386 2 1 1 80 19 10000836 10002985 ACTATGACCAGCTTGTTCG 58 10003026 10003047 GGTCTATGTGGTACTTCTTCAG 58 NA Rattus norvegicus 81 LOC102547344 ENSRNOG00000030156 ENSRNOT00000041707 1 1 1 84 18 19275091 19275110 CTCAGGATCTCTTGCTACAG 57 19272294 19272799 TTATCATTGCAGGATCCTGTC 58 NA Rattus norvegicus 81 Srsf1 ENSRNOG00000050323 ENSRNOT00000073005 2 1 1 80 10 75336054 75336422 AGTGGTTGTTTCTGGACTG 58 75336463 75336484 TAACATACATCACCTGCTTCAC 59 NA Rattus norvegicus 81 Rbsn ENSRNOG00000011391 ENSRNOT00000015602 3 1 1 80 4 124064297 124066765 CCTTGGCAAATAAGCTCAC 57 124064235 124064253 GGACACTGTTAGGTGACTG 58 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000077409 1 1 2 92 1 216661987 216662551 AATGCGAACGACTTCTTCG 59 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000078944 1 1 2 90 1 216661984 216662513 CATCTCTGACTTCTTCGCCA 60 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Sept14 ENSRNOG00000038495 ENSRNOT00000068460 1 1 1 84 12 30606207 30606225 TGAATGTTTGCCCACTCAG 58 30606273 30607030 AATTCCAGTTTCTCCCACG 58 NA Rattus norvegicus 81 Ust ENSRNOG00000016381 ENSRNOT00000022003 2 1 1 80 1 2426026 2436111 CAACTTCTCCAGGTTGGGA 59 2425964 2425988 TAGTTGGATAGAAATCTACTGACGG 60 NA Rattus norvegicus 81 Phlda3 ENSRNOG00000009068 ENSRNOT00000011999 2 1 1 111 13 52589582 52589600 AGAGTCTTGGAACTGGGAC 59 52589675 52591355 AAGTGGACAGAGAAGCTGG 59 NA InUTR Rattus norvegicus 81 Sap130 ENSRNOG00000016773 ENSRNOT00000022761 3 1 1 80 18 24449138 24458709 AAATATCCCAGTTGCTAAGGTG 59 24458749 24458768 CTCTCGGAAGGGTAATCAGG 59 NA Rattus norvegicus 81 Fam101a ENSRNOG00000001011 ENSRNOT00000001337 3 1 1 83 12 37047377 37047395 CTCCCTTCTATGCCCTGTC 59 37040780 37040799 GATTTGGGAAGAGGGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912159 ENSRNOG00000048615 ENSRNOT00000071005 1 1 1 60 10 12213949 12213968 GAACCCTTTCATCTACAGCC 58 12213908 12213928 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704,ENSRNOT00000036232,ENSRNOT00000035576,ENSRNOT00000036180,ENSRNOT00000036168,ENSRNOT00000047964,ENSRNOT00000036283,ENSRNOT00000007429 3 8 8 81 1 226484714 226488197 CCTTTCTATTTGAAGGGTTTCCC 60 226488236 226488256 CTGAAACGGTCATAATCCAGG 59 NA Rattus norvegicus 81 Kpna5 ENSRNOG00000030109 ENSRNOT00000046268 1 1 1 80 20 32513732 32513751 TCCTCAAGAGATGCGAAGAC 60 32513794 32515313 CGTTTGAACAACTGCTCCT 59 NA Rattus norvegicus 81 Olr1559 ENSRNOG00000050423 ENSRNOT00000070849 3 1 1 60 11 43699061 43699081 GGTAGGATTCTCAGATCACCC 60 43699102 43699121 GATGACAGAGAACACCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtcap3 ENSRNOG00000047941 ENSRNOT00000073236 1 1 1 112 6 26486161 26486264 GACTACTGAGCGTTACCGT 59 26485946 26485964 AGACAAGAGCAGGTTCACC 60 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 3 2 2 154 4 6947745 6947874 TCAACTGTCTCCAGGTACAC 59 6947991 6948009 CACCTTGTTGCTGAAGAGG 59 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645,ENSRNOT00000001215 2 2 2 81 12 30212305 30212327 CTGGTATAAGATGTACCAGAAGC 59 30212368 30214149 AGGTGGATCCTCATGAAGC 59 NA Rattus norvegicus 81 Cct6b ENSRNOG00000007523 ENSRNOT00000009944 3 1 1 80 10 70087127 70087642 ATTTGAGTACACATTGGGCG 59 70087066 70087086 TTGACCAACAAGGTAACAGAG 58 NA Rattus norvegicus 81 Degs2 ENSRNOG00000011716 ENSRNOT00000015855 1 1 1 80 6 132595052 132595071 CTTCAATGTTGGCTACCACG 60 132592347 132595009 GCAATCATCCGTACCAGTG 59 NA Rattus norvegicus 81 Fam219a ENSRNOG00000039559 ENSRNOT00000060642 3 1 1 83 5 57900744 57900765 CCCTAATAAAGGCTACTCTTCG 58 57900042 57900700 AAATCGTCATCGCTGTCTG 58 NA Rattus norvegicus 81 Zfp560 ENSRNOG00000048394 ENSRNOT00000071010 3 1 1 89 8 21384105 21384124 CAACTTAACACCAGAGGGAC 58 21383616 21384055 TCCATTGTGGCTATTTGACAG 59 NA Rattus norvegicus 81 Ociad1 ENSRNOG00000002205 ENSRNOT00000002996 1 1 1 80 14 37468166 37470440 AGGAATACTGTCAAGTCATCCA 59 37467222 37467241 TTTCCAGCAAAGTATCCCAC 58 NA Rattus norvegicus 81 Olr951 ENSRNOG00000047710 ENSRNOT00000051670 1 1 1 60 7 6644992 6645011 CCTATGATCGATACGTTGCC 58 6645032 6645052 CTGCTGTTCATGATGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000078494,ENSRNOT00000088168,ENSRNOT00000081017 1 4 6 80 1 41561493 41561511 ATGATGAACCTGCAGGGAG 60 41561551 41587201 GGATAGAAATGTGTACACTCCAG 59 NA Rattus norvegicus 81 Usp39 ENSRNOG00000010930 ENSRNOT00000015562 2 1 1 80 4 100202721 100205700 GGATACTATTAATAGGAGTGTGCTG 59 100202665 100202683 GCATATGCATTGATGTGCG 58 NA Rattus norvegicus 81 Phkg1 ENSRNOG00000000920 ENSRNOT00000001222 3 1 1 81 12 30461196 30461216 ACATGAACATCAAGCTCACTG 59 30461259 30462216 GGAGTCCCACAAACCTCTC 60 NA Rattus norvegicus 81 Mir3559 ENSRNOG00000050872 ENSRNOT00000074039 3 1 1 70 X 75459303 75459327 TGACAGACTTAGTACTACATGATCC 60 75459257 75459275 TACTCACTGCACGACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd3 ENSRNOG00000024027 ENSRNOT00000039532 2 1 1 80 7 63001189 63002409 CTGTTGTGCTTAGGTGTAGTC 59 63001129 63001148 TGTCTCTTCTTCCTCCTTCG 59 NA Rattus norvegicus 81 Cpe ENSRNOG00000043387 ENSRNOT00000064297 1 1 1 81 16 26989173 26989191 TGAGAAAGCAGCATCTCAG 58 26990865 26990888 GAAGTTCCGGTTCAGTTCC 59 NA Rattus norvegicus 81 LOC100362277 ENSRNOG00000038057 ENSRNOT00000043027 2 1 1 60 19 58412379 58412397 AGTCCAAGAACCACACCAC 60 58412420 58412439 TTCTTGATGCCGTTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc9 ENSRNOG00000006619 ENSRNOT00000009009 2 1 1 82 15 4359535 4359553 CAAAGAAGCAGAGCTGAGC 59 4359599 4359943 TCTGTCTGCTCTGGATGAG 59 NA Rattus norvegicus 81 AABR07065789.2 ENSRNOG00000031918 ENSRNOT00000040523 2 1 1 86 6 141365023 141365122 CTCTTCCTGGTGTCCTATCC 59 141364956 141364974 AACAGGTGACAGACAGTGG 60 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000049090 ENSRNOT00000072189 1 1 1 110 2 200603652 200606168 CCACTGTCTGTTCAGAGGG 60 200606242 200606260 CTGACAGTCCTGGGAACAG 60 NA Rattus norvegicus 81 Ect2 ENSRNOG00000024365 ENSRNOT00000018055 2 1 1 80 2 112770631 112774028 ATCTTCCTTAGCAGGTATTCCA 59 112770572 112770594 CGACTTAATGTATGACTTCTCCG 59 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 3 2 2 80 10 55925363 55925383 GAGTACAAGCTGATGTATGGG 58 55925425 55925783 GCCATCCTTCATGTCTAGC 58 NA Rattus norvegicus 81 Psmc2 ENSRNOG00000012026 ENSRNOT00000016450 2 1 1 80 4 9873275 9873293 AGTTCGTGGTGGATCTCAG 59 9872861 9873232 ATTTATTTCTGTCCACGCCG 59 NA Rattus norvegicus 81 Mir18a ENSRNOG00000035645 ENSRNOT00000053768 2 1 1 60 15 100180040 100180063 TCTAGTGCAGATAGTGAAGTAGAC 59 100180082 100180100 CTTATGCCAGAAGGAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35d2 ENSRNOG00000027229 ENSRNOT00000036212 1 1 1 80 17 1619264 1619911 AAATATTTGCATGGCAGGTG 57 1619203 1619222 TCATCCACAGGTTGTTTAGG 58 NA Rattus norvegicus 81 Rnase1l1 ENSRNOG00000025615 ENSRNOT00000033809 3 1 1 60 15 28044164 28044182 TTTCACTGCTTGTCCTGGT 60 28044122 28044140 ACTGAAGGTTTCCTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893,ENSRNOT00000074197 2 2 2 80 6 146830873 146830891 ATTCAAACTGCAGCAATGG 57 146826759 146830830 AGCTTCTGTTGCTATCTTCC 58 NA Rattus norvegicus 81 Uqcrc1 ENSRNOG00000032134 ENSRNOT00000042114 1 1 1 80 8 117683611 117684811 CTTTCAAGGGAACAAAGAACC 58 117684853 117684871 TGTAGGCATTAAGATGGGC 57 NA Rattus norvegicus 81 Uqcrc1 ENSRNOG00000032134 ENSRNOT00000042114 3 1 1 82 8 117683611 117684811 CTTTCAAGGGAACAAAGAACC 58 117684854 117684873 GCTGTAGGCATTAAGATGGG 59 NA Rattus norvegicus 81 Akap5 ENSRNOG00000006410 ENSRNOT00000008416 1 1 1 119 6 99356681 99356699 GAATCTGATGCACTGAGCC 59 99356781 99359501 ATTTAAAGCCCAACCTGGAG 58 NA InUTR Rattus norvegicus 81 Stx8 ENSRNOG00000003849 ENSRNOT00000005204 1 1 1 80 10 54516281 54518241 GAAGACACCTAAGCTTACCCT 59 54518281 54518301 AGTAAGTCCTTCAAGAGGTCG 59 NA Rattus norvegicus 81 Crlf2 ENSRNOG00000049828 ENSRNOT00000075656 3 1 1 99 14 1460200 1460218 TTTGCCATGACCTGGAGAG 60 1459605 1460138 TGGTTTCCATACCGGAACTC 60 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 1 1 1 60 5 173488393 173488412 CTGCTGATGGATGTCTTACC 58 173488352 173488376 CAGACAGTATTAGACAGATACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata5l1 ENSRNOG00000000169 ENSRNOT00000043414 2 1 1 80 3 114758235 114758253 GACGATGCCTTGTTACGAC 59 114758296 114759271 AATAGAAAGCCTGCCCTCTC 60 NA Rattus norvegicus 81 LOC100912024 ENSRNOG00000032944 ENSRNOT00000046475 1 1 1 60 5 116973374 116973393 CCCACGACAATACAAGATCC 59 116973414 116973434 CCTATCCTTTACGTCCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 2 2 2 80 18 24749722 24750020 GATCACAGACAAGGTCATCAG 59 24749662 24749682 TTCTTCACCCAGTCAGATACC 59 NA Rattus norvegicus 81 Atp6v1e1 ENSRNOG00000011905 ENSRNOT00000016495 3 1 1 91 4 153354330 153357166 CTGAGGACATAGCTGGTGG 60 153354257 153354275 GGCTATTAGGTCCAGTCGG 59 NA Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000075564 2 1 2 87 8 133197105 133197125 GTATCCAAGAGCTTGATGAGG 58 133197173 133213284 GCAATTTGTTTCACACTGGT 58 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 3 2 2 146 8 116882792 116883102 CAGTGAAGCGTATCACCTG 58 116882664 116882682 TAGTCATGGTAGCTGTGCC 59 NA Rattus norvegicus 81 Dlx5 ENSRNOG00000010905 ENSRNOT00000014946 2 1 1 91 4 32389642 32391482 CCAGCCAGAGAAAGAAGTG 58 32389569 32389589 AGCTGGAATAAATAGTCCTGG 57 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139 3 1 2 82 4 166211730 166213358 GGAACCAGAACTTCAGAGC 58 166213404 166213422 CATTAGCAGGTGGTCTTGG 58 NA Rattus norvegicus 81 Hus1b ENSRNOG00000052502 ENSRNOT00000084871 3 1 1 60 17 34694249 34694267 TCTCAAGGCAAAGACCCAG 60 34694286 34694309 GTAGAAGTTTCCTATTATCCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp788 ENSRNOG00000014380 ENSRNOT00000019278 2 1 1 81 1 98228623 98229167 GAAGTCAGAGAATGTGTACATGTG 60 98229203 98229225 GGTGTCTTGGTAAAGATTTCTCC 60 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000077024 1 1 3 80 X 71168576 71168597 CGAGTATATGAATTGCACTTGG 58 71168301 71168537 GATCCCTTGTACCTATAGTGC 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027518 1 2 3 80 10 15453767 15454362 GTCTGCGGAGATTAGGAGG 59 15453705 15453723 TCTTGGTTCCGAGTCTTGG 59 NA Rattus norvegicus 81 AABR07036035.1 ENSRNOG00000022784 ENSRNOT00000029702 3 1 1 115 12 31759567 31759585 TGGATGTGTATTGGAGCCG 60 31759465 31759485 TGATGGGTCGATGAAGGTG 60 NA Rattus norvegicus 81 Hbe2 ENSRNOG00000030784 ENSRNOT00000048484 1 1 1 80 1 169001714 169001735 GGCTGCTATCATAAGCATATGG 59 169001324 169001675 TATACAATGAGGAGCCTTCCC 59 NA Rattus norvegicus 81 Sct ENSRNOG00000017873 ENSRNOT00000024094 2 1 1 91 1 214265052 214265174 TACAGGATTGGCTTCTGCC 60 214264979 214264997 CTCTGAATGGTCGACAGCA 60 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083,ENSRNOT00000080303 1 2 2 80 5 90870974 90870992 TGGCACACTGAGGATATGG 59 90871033 90880583 TGGAGGTATAGCATACCAAGAC 59 NA Rattus norvegicus 81 Dnah11 ENSRNOG00000005451 ENSRNOT00000007233 2 1 1 80 6 145943683 145944929 ATGGATGATAACAAGGTGCTG 59 145943623 145943641 GGTCTCAAACAGAAGCCTC 58 NA Rattus norvegicus 81 Fbxl13 ENSRNOG00000043035 ENSRNOT00000065039 2 1 1 80 4 10039954 10052644 TGGATGACCAGCTGATGAC 60 10052684 10052706 CGAAGTGGCTCTTTACTAAATGG 60 NA Rattus norvegicus 81 Scrg1 ENSRNOG00000013228 ENSRNOT00000017888 1 1 1 60 16 36130624 36130643 AATTTCAGCGAATTGCTCTG 58 36127718 36127737 CAAAGGAGATCTTTGGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Smco4 ENSRNOG00000011162 ENSRNOT00000014827 3 1 1 94 8 14060554 14060573 GAAATCAGTTGACCCACGTC 59 14079308 14079326 CTTGAAGAAAGGGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0701.3 ENSRNOG00000057143 ENSRNOT00000077901 2 1 1 60 10 70380616 70380634 AGAGGGAAGTACAGGTGAG 58 70380574 70380592 ATGAAAGAGGAGTGGTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub1 ENSRNOG00000032778 ENSRNOT00000051783 2 1 1 80 3 120392885 120392904 GAAATTGCATCAAGTGGTGG 58 120391019 120392845 ACACATACTAGATTAGCGTCAG 58 NA Rattus norvegicus 81 LOC100362798 ENSRNOG00000026875 ENSRNOT00000034088 3 1 1 62 7 62317520 62317538 ATCCTGTGGGATTGGTGTG 60 62317476 62317497 TGATATAAGACACCCAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423,ENSRNOT00000011070 3 2 2 80 7 130259159 130259178 ACCAATCATGGCAGTAACCA 60 130259221 130259328 GCATCTGTCTTCCTGTCCT 59 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 1 1 1 149 13 60436533 60441102 AAAGAAAGAATGACGTCGAGG 59 60441213 60441231 CTTCTCCTCCACTGAAGCA 59 NA InUTR Rattus norvegicus 81 Fam53c ENSRNOG00000020261 ENSRNOT00000027499 2 1 1 81 18 27562825 27567168 TCCAGCTTGTGTCTGAAGG 60 27567213 27567231 CTGAAGTTGAGGCTGTCCT 59 NA Rattus norvegicus 81 Mirlet7b ENSRNOG00000035636 ENSRNOT00000053759 3 1 1 67 7 126590630 126590649 GGGTGAGGTAGTAGGTTGTG 60 126590674 126590697 AGGTTGTATAGTTATCTTCGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 3 1 1 80 2 251990991 251991009 AGCTCAAAGCCATCAACCT 60 251991047 251994645 CGAATGTTATAGTCAGGGTAAAGTC 60 NA Rattus norvegicus 81 Clec2e ENSRNOG00000052128 ENSRNOT00000077791 3 1 1 82 4 162855675 162855693 CTTCTCTGCTGCTATCGAG 58 162853046 162855630 TCCTTTCTCACTGACAAAGC 58 NA Rattus norvegicus 81 AABR07002659.1 ENSRNOG00000034000 ENSRNOT00000024155 1 1 1 80 1 79290652 79291978 CCATGTGTACAGTAACATTGAG 57 79292114 79292133 AAAGCTAATGAGCATCCTCC 58 NA Rattus norvegicus 81 Gsta5 ENSRNOG00000000201 ENSRNOT00000044944 1 1 1 80 8 85556157 85556176 TGCTTCACTACTTCAATGCC 59 85556218 85559032 TCTCTTCAAACTCCACTCCT 58 NA Rattus norvegicus 81 Plk1 ENSRNOG00000018815 ENSRNOT00000025629 3 1 1 80 1 192120321 192123693 CAGTCCTTAATAAAGGTGTGGAG 59 192123733 192123751 CATTTGTCTCCCGAACCAC 59 NA Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000085581 3 1 2 141 17 13802503 13802700 ACTGTTGAGCTTCATCGTC 58 13802380 13802399 GTTGACCTTGTAGGCTATGC 59 NA Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 2 1 1 60 18 47659420 47659440 TAGTCTGGGACAAGTTCACTG 60 47659462 47659480 CTTAGGTCAAGCCACACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 1 1 1 80 X 71202736 71202754 TCGTCGCCACTTATATCCA 58 71202798 71203450 TCCGCTTTACATCTTCCGT 59 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 2 1 1 60 11 43687492 43687511 AGTACCACACCATGATGTCC 60 43687532 43687552 GCTATGAATATGCCCATGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 1 2 2 80 10 109969453 109969559 CAATGTCATCAAGGTCAGTGTC 60 109969600 109969618 TCTGGAGTAGACTCAGCCT 59 NA Rattus norvegicus 81 Atp1a1 ENSRNOG00000030019 ENSRNOT00000040430 2 1 1 80 2 204011881 204011899 CTCCATGATTGACCCTCCT 59 204010903 204011839 ACCATGATGACCTTAATCCCA 59 NA Rattus norvegicus 81 L3mbtl2 ENSRNOG00000024743 ENSRNOT00000034998 2 1 1 81 7 122915912 122915930 CAGAGCTCCAAGAAACCCT 59 122915975 122916658 CAGCGATGATGTCATCAGG 59 NA Rattus norvegicus 81 Mir3564 ENSRNOG00000046739 ENSRNOT00000072413 1 1 1 60 19 54632037 54632057 TCTGTATCCCTCAAGCTTTCC 60 54632078 54632097 TCTTCCCTCTTTGCATTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C3ar1 ENSRNOG00000009211 ENSRNOT00000012216 2 1 1 80 4 155685932 155690768 ACCTCAGTGCTCTTGACTG 59 155685870 155685888 TAAACAGAGGCCGTGAGTG 60 NA InUTR Rattus norvegicus 81 Raver1 ENSRNOG00000020710 ENSRNOT00000046983 3 1 1 115 8 22111715 22111733 CTCGATCCGGAAGAGATCC 59 22110249 22111638 TCATGTACTTCCTGGTTGGTC 60 NA Rattus norvegicus 81 LOC100911456 ENSRNOG00000047911 ENSRNOT00000075212 3 1 1 80 5 164550955 164550974 GCCTACTTCTCTATGCTGCA 60 164550813 164550912 TGGGAATACAGCTTCAGGG 59 NA Rattus norvegicus 81 Olr1104 ENSRNOG00000031284 ENSRNOT00000047272 2 1 1 60 7 139929366 139929385 ACCGTACACAACTACAACTG 58 139929325 139929343 AGACATCAGAGCAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf2bpl ENSRNOG00000011026 ENSRNOT00000014645 3 1 1 60 6 110902015 110902033 AGTCGGGTCTAATGTACCT 57 110901973 110901991 CCCAGCTAAGATAGTTGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 1 1 2 73 6 139637184 139637312 AAAGGTGTCCAGTGTGAGG 60 139637129 139637147 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1311447 ENSRNOG00000016606 ENSRNOT00000022308 1 1 1 97 9 94567579 94567597 AGAATTTGCAGTCTCTGGC 58 94567658 94567801 CAAGTGATCCTCCATCCTG 57 NA Rattus norvegicus 81 AABR07065699.5 ENSRNOG00000058753 ENSRNOT00000075467 3 1 1 135 6 139523662 139523680 TCTCAAATCCCGACTGAGC 60 139523779 139524168 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 1 1 3 60 1 198899311 198899329 CGGAGATGGGTAACATTCC 58 198895797 198895819 CTTCCTTCTCTTCATTCTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Atp10a ENSRNOG00000056228 ENSRNOT00000080907 2 1 1 80 1 116101307 116101701 CTATGCAGGACATGAAACCA 58 116101743 116101762 TTCATCTGCCTTTCAAGCTG 59 NA Rattus norvegicus 81 AABR07012658.1 ENSRNOG00000045536 ENSRNOT00000071087 2 1 1 117 2 201677913 201677931 CTTCACAGCGATGAGAGGA 59 201677795 201677832 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Pcdh15 ENSRNOG00000000606 ENSRNOT00000067633 3 1 1 80 20 15275768 15279487 AAGACATAGAAGACGTGCCA 59 15271663 15271682 CCGAGGTGTAATCATTCAGG 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 1 2 2 80 18 27097241 27097259 CATTGAAAGTGGAGGTGGG 59 27097300 27098771 TCTCTTAGGATTTGTCTGTGGT 59 NA Rattus norvegicus 81 Elac2 ENSRNOG00000003424 ENSRNOT00000004722 3 1 1 80 10 51499972 51500545 CACATGAAGGTCTGCTTTGG 60 51500587 51500606 AATGTCATCTGCAAACAGGG 59 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000067034 3 1 2 88 2 124403436 124403454 ACGATTCTGTCCCTAGACC 58 124403506 124404688 AACTGTGTTGGTCTTCTCG 58 NA Rattus norvegicus 81 Cplx1 ENSRNOG00000000060 ENSRNOT00000061720 3 1 1 107 14 2219657 2224828 AGGGCATACGAGATAAGTATGG 59 2224896 2224914 CCTTCTTGGGTCGAGTCAG 60 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 1 2 2 83 8 76426399 76427600 TCATACAGTCTCAACAGATCAC 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Spock1 ENSRNOG00000012747 ENSRNOT00000061187 1 1 1 80 17 7796316 7797163 GTAAGCTGTGAAGAGGAGCA 60 7797206 7797224 GTCGTCTAGGTCATCCAGC 60 NA Rattus norvegicus 81 Fbxo2 ENSRNOG00000009409 ENSRNOT00000012670 3 1 1 81 5 164977161 164977179 GAGCATGAAGATGTGCTGG 59 164977224 164977442 TGTGGGAGATCTCCATCCA 60 NA Rattus norvegicus 81 Srf ENSRNOG00000018232 ENSRNOT00000061430 1 1 1 80 9 16738461 16740353 CATGAAGAAGGCTTATGAGCTG 60 16740394 16740412 TACACATGGCCTGTCTCAC 59 NA Rattus norvegicus 81 Omd ENSRNOG00000046658 ENSRNOT00000074323 3 1 1 75 17 14636908 14636932 CCAAGGAATTTGGAACATCTATACC 60 14636114 14636135 GAGAAGGACACATCATTGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Abcd2 ENSRNOG00000015538 ENSRNOT00000021064 3 1 1 80 7 132301694 132301715 AAGATATTTCAGGCTGCTATCG 59 132297859 132301654 GGTGTGGTATTTCCACAGAG 58 NA Rattus norvegicus 81 Olr1111 ENSRNOG00000031503 ENSRNOT00000043467 1 1 1 60 7 140108319 140108337 CTCTACACAGTGCTCACCC 60 140108360 140108379 CCTCTTGGTTCTTGAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prp2 ENSRNOG00000005379 ENSRNOT00000007124 3 1 1 83 4 166076240 166077922 GGAACCAGAACTTCAGAACC 59 166077966 166077986 CTATTACCAGGTGGTCTTGGT 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886,ENSRNOT00000064105 3 2 2 80 19 12504551 12504569 AGCACACCCTACATGTTCC 60 12491547 12504508 GATGACAGACTTCCTGAGGT 59 NA Rattus norvegicus 81 Erp44 ENSRNOG00000005841 ENSRNOT00000007711 2 1 1 83 5 63970523 63970542 CAGACTACATCAGGCAACAG 58 63969312 63970479 TCTTACTGCGATCAAGATTGG 58 NA Rattus norvegicus 81 Des ENSRNOG00000019810 ENSRNOT00000026860 1 1 1 80 9 82561903 82563321 TCTCAACTTCCGAGAAACCA 59 82563361 82563382 TCAATGGTCTTGATCATCACTG 59 NA Rattus norvegicus 81 Acvr2a ENSRNOG00000005334 ENSRNOT00000007404 3 1 1 80 3 33028467 33028487 TGAGGATAGATATGTACGCCA 58 33028529 33030655 CATCTACAGGTCCATCTGC 57 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 2 3 3 80 13 56603687 56604287 CTGCAGGAAAGAACAAGAGAC 59 56604326 56604347 ACTTTGAATGTCCTCTGTATCG 58 NA Rattus norvegicus 81 Rbm44 ENSRNOG00000024878 ENSRNOT00000038536 3 1 1 80 9 98293396 98293414 GAGTCCAAGCTGTTGTCTG 59 98293553 98293685 ATTTGCTCCTGAAAGGCTG 58 NA Rattus norvegicus 81 Tmem216 ENSRNOG00000020692 ENSRNOT00000028079 3 1 1 80 1 226605253 226605672 TTTCCTGTACAAAGGTCTCC 57 226605192 226605210 CCAAGATAAAGGAGCAGCA 58 NA Rattus norvegicus 81 LOC100910876 ENSRNOG00000060145 ENSRNOT00000089901 2 1 1 60 10 44471828 44471846 GACACCTTCCTCTTCACAG 58 44471786 44471806 TGATGTTTCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam19a2 ENSRNOG00000004180 ENSRNOT00000005537 3 1 1 81 7 66056896 66058051 GTGTGGATGCATCCATAGTG 59 66056834 66056855 GGAAGGACTTTACATTCCTCTC 58 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000087528,ENSRNOT00000026716 3 2 2 71 9 17689237 17689255 CTATGTCAGAGGAGCCGTC 59 17688191 17688209 GTCATCTTCTGGATTGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Ly6g6d ENSRNOG00000000844 ENSRNOT00000001120 3 1 1 102 20 5064203 5064221 TGATCACCTGTGGTGAAGG 59 5062036 5062054 TAGTGATGGCTCAAGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Slc25a29 ENSRNOG00000004351 ENSRNOT00000005753 3 1 1 80 6 132738581 132738880 TCATCAAGCAAGAAAGTGTGC 60 132738521 132738540 CCAGTGCATTGATGAAGGTG 60 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 2 2 2 86 9 82597334 82597352 CCTACCATGAAGCCCAGTC 60 82597400 82597740 CATGAGTGAGACCTTGAAGGT 60 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000071180 3 1 2 95 1 90959135 90959153 CAAAGTGTCTGACCTCAGC 59 90958844 90959076 TCTTCATGAGGCATGATGC 58 NA Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 2 1 1 61 11 33890001 33890019 CCAGGCTGTCTGTACAGAG 60 33890044 33893014 AGACATTCACCACTCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 3 1 1 87 11 33890043 33893013 AGGCAGAGTGGTGAATGTC 60 33893064 33893082 CTCGCTTCGAAACTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Prpf31 ENSRNOG00000061039 ENSRNOT00000091739 3 1 1 80 1 64161766 64161785 CAAGAGGAGACACAACTGGA 59 64161597 64161726 CTCAGCAAACATCTTGCTATCC 60 NA Rattus norvegicus 81 RGD1561919 ENSRNOG00000033451 ENSRNOT00000047417 3 1 1 60 19 14093421 14093440 GTGTGATCACCATCATGCAG 59 14093463 14093481 CTGTTCAAGAACCAGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs2 ENSRNOG00000003687 ENSRNOT00000005156 3 1 1 84 13 60846999 60847018 ATCACCACAGAAACTGTCCT 59 60846690 60846957 GTCTATGTTTATCTCTTTGGGAGC 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 1 2 2 80 11 86518398 86518500 GCTGAAGGACAGGATACGA 59 86518541 86518562 TCTTCATCTGAGTCACATTCTG 58 NA Rattus norvegicus 81 Chmp2a ENSRNOG00000043328 ENSRNOT00000030931 1 1 1 80 1 65543071 65543167 GAACAGACAGCTGAAATTACCC 60 65543205 65543226 TCCTTCATGTCCATGATCTCTG 60 NA Rattus norvegicus 81 AABR07021066.1 ENSRNOG00000039332 ENSRNOT00000060277 1 1 1 80 13 55701238 55701257 AAGAGGAGGAAGAAGATGGG 59 55701141 55701196 CATCCTCAGCTTTATCTCCG 58 NA Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 1 1 1 92 13 55870437 55870455 CTGTGAATGTAAGCTGGCC 59 55869176 55870385 GAGAACCTTCTGTAGTAATCCTC 58 NA Rattus norvegicus 81 Hist1h2af ENSRNOG00000022146 ENSRNOT00000022965 2 1 1 73 17 43627506 43627524 TACAAGGGCAACTACTCGG 59 43627451 43627469 GTCAGGTACTCCAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc17 ENSRNOG00000003803 ENSRNOT00000005078 2 1 1 80 7 53665214 53669680 CTGACAAGGAATTTCGGCA 59 53665152 53665171 TCAGGTCTGCTATAAACCCA 58 NA Rattus norvegicus 81 Ifnk ENSRNOG00000022990 ENSRNOT00000034527 2 1 1 88 5 50631723 50631741 CTGGAAGATTGTCGTGGTG 59 50631791 50633851 GCTTGAAGCTGGATGATTCTC 60 NA InUTR Rattus norvegicus 81 Zcchc9 ENSRNOG00000051682 ENSRNOT00000086300 1 1 1 95 2 20910548 20912024 AGAACTCAGATCGAATCATCAC 58 20910474 20910492 TAGGTTTCTGTGGTTTGGG 57 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 2 2 2 80 13 55502920 55515771 GCACATTCTTTAGTGGGCAC 60 55502859 55502882 GATGTCAGACTTGAAGTTGTATCC 60 NA Rattus norvegicus 81 Selo ENSRNOG00000060120 ENSRNOT00000078620 1 1 1 80 7 130077674 130077694 CTCAACACTGACAACATGAGC 60 130077734 130078371 GTCAGGGTCATACCTATCCAG 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000049799 ENSRNOT00000047974 1 1 1 60 10 44174279 44174300 CTGTGGTCATTCTCTTCTATGG 58 44174240 44174258 TGGAGGGAGTTAGGTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spred3 ENSRNOG00000051915 ENSRNOT00000083817 1 1 1 86 1 88110108 88110543 CTCAGCCAGAATCCTCCTC 59 88110040 88110058 TACTTAGGGCAGACAAGGG 58 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601,ENSRNOT00000071846 2 2 2 80 8 23342601 23344591 GGTTGAATTGTTTGAGCACAG 59 23338738 23338759 AATTGGCCAGATTTATCCTTCC 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 3 2 2 81 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117847 TACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Mgat4c ENSRNOG00000004149 ENSRNOT00000005523 2 1 1 80 7 44018086 44018110 CTTCTCAGGAACTATAAATGTCACC 59 44018145 44022170 AGTCCAATTGTGAGATATCGCT 60 NA Rattus norvegicus 81 Zfp352 ENSRNOG00000033600 ENSRNOT00000049470 2 1 1 60 5 110325487 110325505 GAAGCGATACTCCTGTACC 57 110325445 110325463 GAGGTGGTGAGACTTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mak ENSRNOG00000015101 ENSRNOT00000020672 3 1 1 80 17 21547977 21552732 CATACCAACGAATCCAGTCAG 59 21552772 21552792 TCTCCAGACTTGAAGACTGTC 59 NA Rattus norvegicus 81 Olr1536 ENSRNOG00000053715 ENSRNOT00000081508 1 1 1 60 11 45687779 45687800 CTCTTCTCTTCATGTATCTGCT 58 45687740 45687759 TCCATCATGTCTTCATCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drc7 ENSRNOG00000025860 ENSRNOT00000031064 1 1 1 80 19 10379411 10379736 GATCACTCGGTTATATGCCAG 59 10379351 10379371 TTCCTCCTTCAATGAGTTGGT 59 NA Rattus norvegicus 81 Slc30a9 ENSRNOG00000002246 ENSRNOT00000065550 3 1 1 80 14 42474751 42475143 TAAGTATGTCATGGAGAGTCGT 59 42474692 42474711 ATCATCACTCCTAGGACAGC 59 NA Rattus norvegicus 81 Tspan13 ENSRNOG00000005046 ENSRNOT00000006752 1 1 1 80 6 55506799 55524202 TGCTATACACCCTGGTCAG 59 55506737 55506755 CTCGGAGACTGGAGATCAG 59 NA Rattus norvegicus 81 Slc6a11 ENSRNOG00000005697 ENSRNOT00000008342 2 1 1 80 4 146220467 146221267 TGGGTGTATGGAAGTAACAGG 60 146221309 146221327 GCACCACTTGATGAGTGAC 59 NA Rattus norvegicus 81 Pik3c2a ENSRNOG00000020479 ENSRNOT00000055120 2 1 1 80 1 185318780 185318800 GATGAGTTTCAGGAACTGCAC 60 185318839 185320226 AACCATCCTATTAGGAAAGCCA 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 2 1 1 62 10 14051943 14052736 TTGCCACAGATCAGCTAGG 60 14051899 14051919 ATCAGTTCCCTAGGGAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Efcab14 ENSRNOG00000010091 ENSRNOT00000013471 1 1 1 80 5 134613814 134613834 TGTAGAGGCAATACAGAAGAC 57 134613876 134615713 CTTCCATTGGTCTCCACAC 58 NA Rattus norvegicus 81 Efcab14 ENSRNOG00000010091 ENSRNOT00000013471 2 1 1 80 5 134616862 134616883 CGACCTGATAGAAAGTGATGTG 59 134616922 134618782 CTATTACCCATCATGCTGGAG 58 NA Rattus norvegicus 81 Lcorl ENSRNOG00000003787 ENSRNOT00000072746 3 1 1 89 14 69818194 69819140 CAGTCAGTGATTGTATGCCA 58 69819191 69819210 TCTTATCAGTGTGGGACTGG 59 NA Rattus norvegicus 81 Prcp ENSRNOG00000010630 ENSRNOT00000014271 3 1 1 80 1 157732916 157736535 ACTCCTTCAAGGATTCCCA 58 157736579 157736597 AGTGCCTGATTAACTCTGC 58 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 2 2 2 80 6 106539142 106548952 ATAGAGATGAGCAAAGAGCCC 60 106548992 106549012 CACCTGGTCCTTCAGTATCTC 60 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 2 2 2 80 5 135661784 135661918 CAGCAACCAGATAAGGGTG 58 135661722 135661743 TATAACATACTCCTCCATGCAC 58 NA Rattus norvegicus 81 Noxo1 ENSRNOG00000025117 ENSRNOT00000029652 3 1 1 86 10 14064886 14065185 TTTAGGCAGCTCCAGAAGAC 60 14065234 14065252 AAGCTTGGGAAGAACTCGT 59 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000007876 2 1 2 128 9 17212320 17212343 GCATCTCTAAAGGATGAAGTTCTG 60 17212214 17212235 ACTTAACACCAAACCAACGTG 60 NA Rattus norvegicus 81 Otop1 ENSRNOG00000028423 ENSRNOT00000050367 1 1 1 80 14 77241183 77244588 AACACTGGAAAGGTTTGGG 58 77241121 77241139 TTTGACTCATTCAGGACGC 58 NA Rattus norvegicus 81 Tmem140 ENSRNOG00000026965 ENSRNOT00000029845 2 1 1 60 4 62391069 62391088 GCCTTACTCATCATCTTGCT 58 62391110 62391129 TGTCCTTCTTATCTCGTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem88 ENSRNOG00000009870 ENSRNOT00000013439 2 1 1 103 10 56000075 56000093 CAATCTCCTCTTGTTGGCG 59 55999861 56000008 CCTGAGAACGCAGAAACTG 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 3 1 2 137 7 54012507 54012525 AAGTGAAACATCGCACTCC 59 54022612 54024193 CAGATTGAGCTTCACTTCCAG 59 NA Rattus norvegicus 81 Lrrc73 ENSRNOG00000039856 ENSRNOT00000061185 3 1 1 82 9 17113104 17113122 GCATGTTGGGTGATGAAGC 60 17112720 17113059 TGTTAGCTCCTTCAGACCAG 59 NA Rattus norvegicus 81 Tmem181 ENSRNOG00000018158 ENSRNOT00000068457 2 1 1 80 1 47201340 47201358 CCCAGCTGAAAGACAATCC 59 47201400 47202159 TTTCTTCATAGTCACTCCCGT 59 NA Rattus norvegicus 81 Tmem181 ENSRNOG00000018158 ENSRNOT00000068457 3 1 1 80 1 47201341 47201359 CCAGCTGAAAGACAATCCT 57 47201401 47202160 ATTTCTTCATAGTCACTCCCG 58 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000076258,ENSRNOT00000087175 1 2 2 80 1 85497582 85497602 TACACTAGAGTTCTTGGCCTC 59 85499563 85499698 TAGAATGTACCGAAGGCCA 58 NA Rattus norvegicus 81 Pcdhb22 ENSRNOG00000020028 ENSRNOT00000027133 2 1 1 60 18 30593216 30593234 AGAGACTAGCCCTGTTGAC 58 30593257 30593276 TCCCACATCCAAATCCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elof1 ENSRNOG00000014284 ENSRNOT00000019140 3 1 1 105 8 23127091 23127111 CACGAGAAGTCTTGTGATGTG 59 23126583 23126873 CTGACAGGTATGTGATGGGT 59 NA Rattus norvegicus 81 Mpp2 ENSRNOG00000059683 ENSRNOT00000092150 3 1 1 83 10 90022804 90027321 CTGAGTCTGCTATGCAGCA 60 90022739 90022758 GGAAGATCAGGTCCAGTTCC 60 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653,ENSRNOT00000016946 1 2 2 80 2 127703730 127704961 GGTCAGACAACTAGGTATGGA 59 127705000 127705021 AAGGATGGAAGAAAGACATTGC 59 NA Rattus norvegicus 81 Rn60_1_1361.3 ENSRNOG00000012384 ENSRNOT00000016597 1 1 1 60 1 135042500 135042518 CAAAGGCAGTTTCCCACTC 59 135042458 135042476 TGATGAATACAGCCCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945,ENSRNOT00000006162 2 2 2 80 3 1809966 1813415 GGTCATAAAGATGATAGACTTGGG 59 1809909 1809929 ATGAAGTCCAGAATGTTCCAC 58 NA Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 2 1 1 80 7 119173029 119175516 TTTATGCAGAGTCCTGTTTCC 58 119172969 119172988 GCATTCTTAGGTATCCCTGC 58 NA Rattus norvegicus 81 Xpo5 ENSRNOG00000019085 ENSRNOT00000025921 3 1 1 80 9 17131470 17132375 CTATGCTTCGTGTCTTCGTG 59 17131409 17131429 CAAGGATGGGAGATATCAGGG 60 NA Rattus norvegicus 81 RGD1566053 ENSRNOG00000013378 ENSRNOT00000017909 2 1 1 80 4 65684588 65686905 TATCTGCACTTCAAGTGCC 58 65684526 65684545 TAGATGGTGTTGAAGTTCGC 58 NA Rattus norvegicus 81 Vangl1 ENSRNOG00000016477 ENSRNOT00000022182 2 1 1 80 2 204602617 204607572 CAGAGGAAGTTCAGGATGAC 58 204602556 204602575 CCTCTTGGGATATACTGTGC 58 NA Rattus norvegicus 81 AC110981.1 ENSRNOG00000026991 ENSRNOT00000037432 3 1 1 60 11 70687563 70687584 ATGTTCCAGTATGACTCTACCC 59 70687605 70687623 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852,ENSRNOT00000017740 3 2 2 80 5 150741400 150743006 AACTTTGAGGAAAGTCGGG 58 150743050 150743068 CTTCTTCTCCTTCTTGCCC 58 NA Rattus norvegicus 81 Ddx55 ENSRNOG00000001043 ENSRNOT00000001387 3 1 1 80 12 37464077 37464096 TGAAGAGCTTGGATGTCCTG 60 37462983 37464036 GGATTGTGTTTATGCTTGCCT 60 NA Rattus norvegicus 81 AABR07065699.1 ENSRNOG00000050102 ENSRNOT00000072633 1 1 1 72 6 139560046 139560172 AAAGGTGTCCAGTGTGAGG 60 139560208 139560226 GTTTCATGGACCTTCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000073905 1 1 2 60 7 120144799 120144817 ATTGCAGACTTGATGGAGG 58 120144843 120144861 CTACGGGATCAGGGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp26b1 ENSRNOG00000015076 ENSRNOT00000020505 3 1 1 85 4 116265451 116265470 TCATCAAGGAGGTCATGAGG 59 116265035 116265403 CTGGAAACCATCCAGTTCG 59 NA Rattus norvegicus 81 Vom2r33 ENSRNOG00000047703 ENSRNOT00000073461 2 1 1 80 1 65951878 65951897 CTGTGTCCACAGTACTCGA 59 65951941 65951959 CAATGGTTCCTCAAAGGCC 59 NA Rattus norvegicus 81 AC096201.1 ENSRNOG00000052304 ENSRNOT00000091812 2 1 1 64 1 67138578 67138598 GGAACTGGAAAGTATCATCCT 57 67141476 67141497 GTTGTCGATATGATGAAAGAGG 57 NA DesignNoJunction Rattus norvegicus 81 Wdr54 ENSRNOG00000009324 ENSRNOT00000013128 3 1 1 89 4 113986910 113987023 GATGCTTCTTCAGTACAGGC 59 113986542 113986560 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 1 2 2 80 4 165427475 165427494 AACCTGTGGCTGTATATGTG 58 165427334 165427432 TCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Crmp1 ENSRNOG00000004781 ENSRNOT00000065334 1 1 1 80 14 78270026 78270044 TCCTCGCCTTCTAAACACC 59 78267925 78269982 ATCTATCTGGGCACCTGAC 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 2 6 6 80 7 132140133 132140896 CAGAACCAGAGATGATGCAG 59 132140072 132140090 AGCTCTGCACATTCATCTG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 2 3 5 158 20 5416724 5416836 CACTTTCCCAGAGATGGGA 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Nup85 ENSRNOG00000003673 ENSRNOT00000005035 2 1 1 80 10 104134441 104134459 TCCTCTCAACACAGAGCAG 59 104134501 104135028 ATGCTTCCAACTTGTTCAGTC 59 NA Rattus norvegicus 81 Slc34a2 ENSRNOG00000004626 ENSRNOT00000048509 2 1 1 80 14 60263288 60263307 TTCCAGAATGGAGAAGATGC 58 60262479 60263247 TTTATCCAGCTGGATGATGAG 58 NA Rattus norvegicus 81 AABR07065792.2 ENSRNOG00000048696 ENSRNOT00000048010 2 1 1 75 6 141472580 141472703 AAGATGTCCAGTGTGAAGTG 58 141472524 141472542 GAGAGTTTCAGAGAAGCCC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065792.2 ENSRNOG00000048696 ENSRNOT00000048010 3 1 1 76 6 141472580 141472704 AAAGATGTCCAGTGTGAAGTG 59 141472524 141472542 GAGAGTTTCAGAGAAGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Pou1f1 ENSRNOG00000000715 ENSRNOT00000000905 1 1 1 80 11 2660152 2661011 AGGACAACTATCAGTATCGCC 60 2661053 2661071 GATCTCCTGCGAAGAAGGT 59 NA Rattus norvegicus 81 Diras3 ENSRNOG00000033736 ENSRNOT00000052237 1 1 1 83 6 135939363 135939381 ATCGAAGTAAACCGGGCTC 60 135939298 135939316 GTACAGGTCCTTGAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 1 1 1 67 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095099 18095120 GGAAACAGTAATTGAAGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Trmt6 ENSRNOG00000021270 ENSRNOT00000028893 1 1 1 80 3 125465562 125465583 GGAAAGTCCCAGAAACTTACTC 59 125465032 125465523 CTGCTGAACTATTTCCTCTCC 58 NA Rattus norvegicus 81 Cd207 ENSRNOG00000013222 ENSRNOT00000017691 2 1 1 81 4 115351426 115351444 ATAGTGCGGAGCAGTACTG 59 115350005 115351384 TTGTAGAGAAACTCGTGTTCTG 59 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000033803 ENSRNOT00000045156 1 1 1 60 9 69791022 69791041 CTAAGAGGCGAAACACTACC 58 69791060 69791082 CTTCGGTAGACAATCTTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctf1 ENSRNOG00000018962 ENSRNOT00000025646 3 1 1 90 1 199164446 199164464 CATTTGGAGGCCAAGATCC 59 199164517 199167089 GTTGCTGCACATATTCCTCC 59 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 3 2 2 80 3 61440231 61441705 CACTGAAGGAGGAACAATACC 59 61440171 61440191 TTCACTTTGAGCCAGTTAGAC 58 NA Rattus norvegicus 81 Zfp146 ENSRNOG00000006796 ENSRNOT00000008889 3 1 1 60 10 74769356 74769377 GCTTACCCATCAGAAGATTCAC 59 74769317 74769335 TTTCCCACAGTCTTTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnpep ENSRNOG00000047387 ENSRNOT00000017718 1 1 1 80 1 59312955 59312977 CTGACCTCATCTATAATCTCCTG 58 59306803 59312918 GCAATTTATGTACTCTGGTCAC 58 NA Rattus norvegicus 81 LOC100911044 ENSRNOG00000047616 ENSRNOT00000075013 3 1 1 81 1 62968883 62979037 ATGAGACAGATATGGATCAGTG 57 62979079 62979097 GACTTCTCTAGGCAGTGGA 58 NA Rattus norvegicus 81 RGD1306151 ENSRNOG00000008443 ENSRNOT00000068663 2 1 1 80 4 169005917 169007050 TGTTTACAGTGATGGAGTTGAG 58 169007091 169007109 CTGGTTGTAATCAGGAGGC 58 NA Rattus norvegicus 81 Ceacam10 ENSRNOG00000046222 ENSRNOT00000057384 3 1 1 166 1 83004000 83004788 GACTACTGCTCACAGCCTC 60 83004918 83004936 AGTGGTTCCCTTGTACCAG 59 NA Rattus norvegicus 81 Ddx54 ENSRNOG00000001377 ENSRNOT00000001859 3 1 1 80 12 41477764 41477886 GAACAGCTCAAGACTTCCT 57 41477702 41477720 AACGACATTCTGTAGCAGG 58 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000076103,ENSRNOT00000039868 3 2 2 60 8 4548703 4548723 CATTTGATCAGGAGACACAGG 59 4548663 4548683 TCTTCAATATTCTGCTGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr1 ENSRNOG00000028498 ENSRNOT00000024012 3 1 1 80 14 77004401 77004420 ATCAAGGACATAGCCTGGAC 59 77004460 77005519 GAAGACAGCTCCAAATTTCTCC 60 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 3 2 2 62 7 60316386 60316404 AGAAGTTCTGCACTAGCAG 57 60316430 60320003 CTGAGCCATACACATCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 2 2 2 80 13 73452299 73460603 TAACGACGTGAAAGACTGGA 59 73452238 73452256 CTGCAGACAGCACTATTGG 59 NA Rattus norvegicus 81 Sh2b3 ENSRNOG00000028198 ENSRNOT00000030583 1 1 1 128 12 40262086 40262182 TTTGTGTTGAAGGTGCAGG 59 40262349 40262367 TAACTCTGTGTCCAGGTGC 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864,ENSRNOT00000084946,ENSRNOT00000089723 3 4 4 84 1 128217240 128217258 GTGACAACTCCAAGCTTGC 60 128213307 128217194 CGCTGGTCAATGAGTAATCAG 59 NA Rattus norvegicus 81 Ankrd34b ENSRNOG00000040166 ENSRNOT00000061812 2 1 1 89 2 22006793 22013349 CCACATCTCAGGTATTGATTTCTG 60 22013397 22013415 TGCACTGCTTTGATCAAGG 59 NA InUTR Rattus norvegicus 81 Armc1 ENSRNOG00000013253 ENSRNOT00000018548 3 1 1 85 2 103957209 103963234 ATCCAGAAGACTACAACTCCA 58 103957144 103957162 CCATCAGCCATATTGGAGG 58 NA Rattus norvegicus 81 Enpp5 ENSRNOG00000010232 ENSRNOT00000013703 2 1 1 87 9 19472995 19473013 GAGTTCAACCGATCGTAGC 58 19470650 19472945 TAACCATGGTTGCCTAACAG 58 NA Rattus norvegicus 81 AABR07065645.2 ENSRNOG00000047785 ENSRNOT00000070980 1 1 1 116 6 138565055 138565073 AATCCCGACTGAGCATCAG 60 138564863 138564977 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 2 2 2 80 11 459036 459055 CTCTGACTTCGGACTTTCTC 58 446478 458998 CTTATTGGTATCTTTCCTCCTCTG 59 NA Rattus norvegicus 81 Rita1 ENSRNOG00000037720 ENSRNOT00000057242 3 1 1 70 12 41486400 41486418 CCCAAATCTCACACCAAGG 59 41487984 41488003 ACTCATCACAGTAGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 3 2 2 80 1 184387167 184387185 ACATCTGTCTTTCACCCAG 57 184387229 184392549 TGGCACAGTTTGATTAGGG 58 NA Rattus norvegicus 81 Glp2r ENSRNOG00000003683 ENSRNOT00000004946 1 1 1 80 10 54317360 54323262 TCCATCAAGCAAGTTACAGG 58 54317299 54317317 GTCTTCCAGACACTTCTCC 57 NA Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 1 1 1 152 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064214 97064232 CTTTGACTCGTCTTTCCCT 57 NA DesignNoJunction Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 3 1 1 153 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064213 97064232 CCTTTGACTCGTCTTTCCCT 60 NA DesignNoJunction Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 2 1 1 80 13 67646339 67646359 ACTCAGAAAGCAGAATCACAG 58 67646399 67646527 GGAAACTTCATCCTTCAACAC 58 NA Rattus norvegicus 81 Tkfc ENSRNOG00000020704 ENSRNOT00000028102 1 1 1 80 1 226647201 226647219 TGTCAGCACTAGAGATGCG 60 226646776 226647160 TTTCAGCATCTATCAGCTTCAG 59 NA Rattus norvegicus 81 Crygc ENSRNOG00000014950 ENSRNOT00000020078 2 1 1 81 9 71787960 71787978 ACTACCCTGACTACCAGCA 60 71786573 71787915 CTGTGGGAACCTGTATGGG 60 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 2 2 2 80 7 122131639 122134434 ACTCCACAGATTGATGGGTC 60 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 AABR07026893.1 ENSRNOG00000050796 ENSRNOT00000072930 2 1 1 81 17 3729726 3729744 GATCCCTTCCAGAAGAAGC 58 3729468 3729684 CTTCCCAATTAAAGCCTATAGC 57 NA Rattus norvegicus 81 Nip30 ENSRNOG00000017841 ENSRNOT00000024120 3 1 1 80 19 10842927 10843629 GAGGACCCAGAAGAATGTC 57 10843672 10843691 CTTCCTGTCTTTCTGTTCCT 57 NA Rattus norvegicus 81 Slit3 ENSRNOG00000007377 ENSRNOT00000009714 1 1 1 80 10 20514358 20514376 CCACATCTCAGATCGAGGG 59 20514418 20517345 CATGGATTCTCTTGCTCACAG 59 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071,ENSRNOT00000042735 2 2 2 80 6 990821 998860 AGAGAAAGGGATGAGTGATGG 59 990761 990781 ATTGAATGCATATCCAGCTGC 60 NA Rattus norvegicus 81 Ccer1 ENSRNOG00000004875 ENSRNOT00000006455 2 1 1 60 7 38947359 38947380 CAAATAATTCCCAATGTGCCAG 59 38947400 38947419 ACTAATGGCTAATGTCCGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927,ENSRNOT00000088469 1 2 2 80 14 78691208 78698848 ATCGGAGCTTCAACATCGT 60 78691146 78691165 GATGGAACTCAGATGCTGTG 59 NA Rattus norvegicus 81 Tbxas1 ENSRNOG00000007918 ENSRNOT00000010796 3 1 1 80 4 66736968 66756909 TCCAACAGAATGGCCTCAG 60 66756952 66756971 TTCCTCCCATCTTCTGTCAC 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 2 3 3 80 12 41354900 41355011 CTGAAGATCATCAAGGGAGG 58 41355053 41355072 GAGGAACACTACGATGTCAG 58 NA Rattus norvegicus 81 Mia2 ENSRNOG00000038832 ENSRNOT00000059335 1 1 1 80 6 80189047 80193698 GGAATGTGAAACTTTGATCACC 58 80193738 80193757 GTAGTGAAGTTCAGGTACCG 58 NA Rattus norvegicus 81 Idua ENSRNOG00000000043 ENSRNOT00000000048 2 1 1 80 14 2045662 2045974 ATACATTGGTAAGTATGGGCTG 58 2045603 2045621 TCAAAGTCATGGTGGTCTG 57 NA Rattus norvegicus 81 Cds2 ENSRNOG00000021265 ENSRNOT00000028888 2 1 1 81 3 124930204 124930222 TCTCCAAAGAAGACCTGGG 59 124930267 124931051 ACATCACGTAGGAGAGCAG 59 NA Rattus norvegicus 81 Ppp2r3b ENSRNOG00000049270 ENSRNOT00000071648 2 1 1 81 14 1472587 1472775 GATTATGTCACCACGGTGAC 59 1472817 1472837 TAATCTCCTGGCAAGAGATCC 59 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702,ENSRNOT00000015632 3 2 2 83 17 9314154 9320748 GGAAGTCTAAGAAGCAGGG 57 9320795 9320813 CAGTAAAGCCGTCTGTAGG 58 NA Rattus norvegicus 81 Eef1g ENSRNOG00000020075 ENSRNOT00000027305 2 1 1 80 1 225173237 225173255 TATGCTGAGTACCGCTTCC 59 225173298 225173410 CAATCGCTGAAACATCCCAG 60 NA Rattus norvegicus 81 Rn60_8_0402.2 ENSRNOG00000051359 ENSRNOT00000077043 1 1 1 60 8 40199314 40199332 TGTCTCCCTGAAGTCTCTG 58 40199272 40199291 TTTCCACTGCTCTGTATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd2 ENSRNOG00000002146 ENSRNOT00000002916 2 1 1 80 14 6604821 6608153 AGTTCCAAGTACTGGTGAGAC 60 6604761 6604781 CAATCACAGCATCGATCTTGG 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078690 1 1 5 80 4 164896380 164896400 AACAGAGAACAGAAGAGATGG 58 164893906 164896339 CATTTCAACACAACCACCTG 58 NA Rattus norvegicus 81 Prlhr ENSRNOG00000009922 ENSRNOT00000013170 3 1 1 60 1 281754861 281754879 GCTACGCAAGATGCTTCTG 59 281754819 281754838 GGTCATATTCTGGCCATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdsl ENSRNOG00000001391 ENSRNOT00000001882 2 1 1 81 12 41644517 41644536 ATGTAAGGGCACAAGAACTG 58 41644580 41645218 TTGCCTTCCCATATCAGGG 59 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 1 1 1 80 10 89095463 89095482 GTAGAGTTTCGGAAGCTTGG 59 89095523 89095802 CATATTAGGGCTGCATCTGTC 59 NA Rattus norvegicus 81 Pgm5 ENSRNOG00000015406 ENSRNOT00000020763 2 1 1 80 1 242720299 242725029 TTCAAACCATTCAGAGTGGA 57 242720238 242720259 GGCGTTAAAGTCAAAGATAGTC 58 NA Rattus norvegicus 81 LOC100359479 ENSRNOG00000043383 ENSRNOT00000014965 1 1 1 80 8 55490092 55490749 AAGTCCTTGTGAGCGAGAG 59 55489744 55489765 GGGCTTTAGCAAAGAGAATCTC 60 NA Rattus norvegicus 81 Ikbkg ENSRNOG00000060936 ENSRNOT00000078438 1 1 1 83 X 156260949 156264077 ATTAAGAGCAGCAAGGGCA 60 156260884 156260902 TTCCTGTTTGGCTACCAGG 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 2 3 6 81 12 41306150 41307122 CTAAGGTTGTGAAGGGTGG 58 41306087 41306105 TTAAGGAACACCACCAGGT 59 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 2 2 2 80 11 15457488 15457509 ACATTTCTGAATCAGCTGAGAG 59 15457548 15461126 TCCATTACTATCCTTCAGGGC 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 3 1 2 98 10 88537803 88538473 AACCATGTTGTGGGTTCTG 58 88538535 88538553 ATAGAAACGCACCTGTTCC 58 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 3 2 2 83 1 127589308 127589327 GACCTTGCTCCATTTCTCTG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Eftud2 ENSRNOG00000002818 ENSRNOT00000055176 3 1 1 80 10 90949172 90949526 ATCCTAAGACGAGAAAGTTCAC 58 90949113 90949131 GAGGCTCCAAGATGAACTC 58 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 3 3 3 81 8 90629319 90630522 TCTGCTAAGAAAGAACCCG 57 90629256 90629274 CTTCCTTTCCAGCTTCCTG 58 NA Rattus norvegicus 81 Pdilt ENSRNOG00000015368 ENSRNOT00000020817 1 1 1 80 1 189210136 189212213 TGTTTGTGATGTTCTATGCACC 60 189210077 189210100 GATACTTTATACCCAGCTCTTCCA 60 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 3 2 2 80 10 110905684 110906720 GTGACTTTGTTGTCCGAGG 59 110906764 110906782 TCACCCGTAGGTGAATGAC 59 NA Rattus norvegicus 81 Gfra4 ENSRNOG00000021241 ENSRNOT00000047947 1 1 1 137 3 123580204 123580222 ACTACCTGGACAACGTGAG 59 123579344 123579362 CAAAGGCTTGTATGGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 1 2 2 80 7 70527907 70529226 AGATTAAGCTGCCTGTGGA 59 70527845 70527866 ACTTGATCTTGCTGATGTAGAG 58 NA Rattus norvegicus 81 Adam11 ENSRNOG00000002753 ENSRNOT00000064429 3 1 1 80 10 90742448 90742565 GAGGTGTAAACGAGTATGGC 59 90742608 90742626 ACATCATGCCCAAGTTCTG 58 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 3 1 1 81 12 42345131 42349221 GATGTCCTAGGTCATGTAAGCA 60 42349263 42349281 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913 1 2 3 80 1 168945647 168945666 CTACTGTTAATGGCCTGTGG 58 168945707 168945846 GGTAGACAATAAGCAGACTGG 58 NA Rattus norvegicus 81 Impg1 ENSRNOG00000012479 ENSRNOT00000017048 3 1 1 80 8 87832493 87832511 CAGACCTCAAGGAGGTCAC 59 87829545 87832452 GCTCTGGTTTACTTTCCAACTC 60 NA Rattus norvegicus 81 Lamc1 ENSRNOG00000002680 ENSRNOT00000003605 3 1 1 80 13 70679912 70679934 CTATTTCTACAATCGGTCTTGGC 60 70679009 70679872 TGCTCAGCAACCTTATCCT 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000090638,ENSRNOT00000047472 3 3 6 80 1 41726480 41726502 CTCAAGATAAGTCTTCAGTGACG 59 41725995 41726441 TTCCTCCACTCTGTGATGAC 59 NA Rattus norvegicus 81 LOC100911479 ENSRNOG00000045886 ENSRNOT00000072282 1 1 1 60 10 44959110 44959131 TGAAGACACATCCCAATATGAG 58 44959152 44959170 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065839.1 ENSRNOG00000050652 ENSRNOT00000073713 3 1 1 60 6 143206538 143206557 AGACAAATCCTCCAACACAG 58 143206497 143206515 TGCAGAGTCCTCAGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Art4 ENSRNOG00000005670 ENSRNOT00000007485 1 1 1 97 4 170838149 170838167 GAGTAAGAACTGCAGCCTC 58 170832232 170838088 TCTTGCTGGAAGCTTTCAG 58 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 2 1 1 80 16 50358468 50358486 CTATCGTGGTGGACATCCT 59 50340728 50358424 TATTCCCTGCGTTCCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC501038 ENSRNOG00000033654 ENSRNOT00000045455 1 1 1 80 8 103350427 103351605 CATTTCCAGGTCTTGATCCTC 59 103351645 103351665 ATAAACATCCACACGATGTCC 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 3 1 1 60 6 142059844 142059862 TTATGCAACCGAGTATGCG 58 142059802 142059822 GGAATCATCTCTTGAGATGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 3 1 2 143 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120116 4124691 GAGACACTGATCCTGCTCTC 60 NA Rattus norvegicus 81 Tspan14 ENSRNOG00000010813 ENSRNOT00000014772 2 1 1 81 16 17588280 17588298 TCGAGAGCAACATCAGGTC 60 17588342 17590082 CAGCACTGATTGGCTTTCTG 60 NA Rattus norvegicus 81 Oxsr1 ENSRNOG00000013136 ENSRNOT00000018056 3 1 1 80 8 127956647 127958863 GAAGTTATGGAGCAGGTTCG 59 127956586 127956604 TGTGGCTAGTTCAATCGCT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839,ENSRNOT00000046849,ENSRNOT00000045165,ENSRNOT00000025536 2 4 4 80 1 140141577 140142652 TCAGTCAGTGTGATCTCCC 58 140141515 140141536 AAGTGATTACAGCATTGTCTCC 59 NA Rattus norvegicus 81 Trpa1 ENSRNOG00000007354 ENSRNOT00000009874 2 1 1 80 5 3795462 3795484 CCTCCGAAATAGAAACATGATGG 60 3795523 3800270 TCGGTCAAGACCTTGATCAC 60 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 3 2 3 102 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967715 22967733 AGTAGAAGGGATGGGACAG 58 NA Rattus norvegicus 81 Acbd4 ENSRNOG00000003108 ENSRNOT00000004163 2 1 1 81 10 91188457 91188547 GACGTTACAAGTGGGATGC 59 91188591 91188610 TTCATCTCCGTGATGTAGGC 60 NA Rattus norvegicus 81 Csde1 ENSRNOG00000061058 ENSRNOT00000091210 3 1 1 80 2 205549382 205550106 GTGTGAAAGATCAGTTTGGC 58 205550148 205550167 CCTGAACTTCCTTCACATGG 59 NA Rattus norvegicus 81 Sell ENSRNOG00000002776 ENSRNOT00000003733 3 1 1 82 13 82370752 82370770 ATGGAGATGTCAGAGTGCT 58 82370816 82372884 GCAGGAGATCACAACACAG 59 NA Rattus norvegicus 81 LOC102546963 ENSRNOG00000042788 ENSRNOT00000066846 1 1 1 80 1 236900847 236900867 TTGGACCTAAGTCATGTGACC 60 236897267 236900805 CAGGAGGACTGACCTTGTC 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 2 2 2 85 16 81204827 81204846 CACAGTGCTGAACGTATTGG 60 81204894 81205787 GAGACAGAGGGACCATGTC 59 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 1 1 1 80 5 153777796 153781864 CCAAGAGCAGAAGGAGAGG 60 153777734 153777753 CGAAAGCTCTTGAACAGCTG 60 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 3 1 1 81 5 153777795 153781863 CAAGAGCAGAAGGAGAGGT 59 153777732 153777750 TGCGAAAGCTCTTGAACAG 59 NA Rattus norvegicus 81 Lrpap1 ENSRNOG00000009313 ENSRNOT00000012665 1 1 1 80 14 80914516 80914534 AGAAGCTGAAGGTGGAAGG 59 80914578 80917752 TGGCCAGGATGACATTGAG 60 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000009513 2 1 2 86 6 105395475 105395494 TGGCCTTCTATCATCTTGGG 59 105395543 105398066 TCACATTGGTGTCTGAGGG 59 NA Rattus norvegicus 81 Slc18a2 ENSRNOG00000008890 ENSRNOT00000011983 1 1 1 81 1 280447168 280448747 TTTGCAATTGGGATGGTGG 59 280448791 280448810 TCCCATAGACAGACACATGC 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410,ENSRNOT00000087912 2 3 6 64 20 4614038 4614057 CACGATCACGATTTCAACCC 60 4614208 4614226 ATGATGACTGAGCCGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Vps28 ENSRNOG00000014633 ENSRNOT00000019707 3 1 1 83 7 117686394 117686556 GGAGCGGGAGAAGTATGAC 60 117686329 117686349 TCCTTGATGTATGCCTTCTCC 60 NA Rattus norvegicus 81 Rbmxl1b ENSRNOG00000059347 ENSRNOT00000081688 3 1 1 90 4 42186957 42186975 TTCTACAGCAGTTCAAGCC 58 42186884 42186903 TCTAGAATCTGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Ndufc1 ENSRNOG00000038218 ENSRNOT00000058190 1 1 1 80 2 140463788 140463807 TCAATGCCAAACCTAACTGG 59 140463033 140463748 GTTGGTGGATGAGATAAATCCA 58 NA Rattus norvegicus 81 LOC100125362 ENSRNOG00000025463 ENSRNOT00000028972 2 1 1 63 8 57255144 57255162 CTTCTTCTCTGCAACTGGC 59 57254054 57254075 CTTTGATCTTGTTTCCTTTCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000065048 1 1 2 89 9 19452877 19454535 TTATTTCTTAGGTGACCATGGC 59 19454585 19454603 TAGCCTTTCCTGAAGGCAG 59 NA Rattus norvegicus 81 Olr896 ENSRNOG00000031510 ENSRNOT00000040141 1 1 1 60 7 5195253 5195272 TGCTAGTCAGAGGTCAAAGG 59 5195212 5195234 GATGGAGATTACGATCATATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krit1 ENSRNOG00000007937 ENSRNOT00000032505 2 1 1 80 4 27453025 27454251 CTGTTCAGAGAATCTTAGTCTTCAG 59 27452969 27452988 GCAAGTATTTCTGGCCAGTC 59 NA Rattus norvegicus 81 Olr1513 ENSRNOG00000034227 ENSRNOT00000043016 3 1 1 60 10 61033633 61033652 TGGCTAACTTCTACTGTGAC 57 61033675 61033693 AAGCGAATGTCAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000084446 2 1 2 94 9 91776726 91776744 AGTCATCTTCCATGAGCCG 60 91668213 91776668 CCAGATACGTGACCTTGCA 60 NA Rattus norvegicus 81 Hcn2 ENSRNOG00000008831 ENSRNOT00000011837 1 1 1 80 7 12856698 12858101 CAGGAGAAGTACAAGCAAGTG 59 12856638 12856657 GTAATCGTGGATCTTCTGGC 59 NA Rattus norvegicus 81 Hcn2 ENSRNOG00000008831 ENSRNOT00000011837 3 1 1 80 7 12858302 12860540 AACATGGTGAACCACTCGT 60 12858240 12858260 GTAGCCAATACAGAGCATGTG 59 NA Rattus norvegicus 81 Tnfrsf21 ENSRNOG00000011517 ENSRNOT00000015918 1 1 1 80 9 20568505 20596873 CAATGGCCACGGTATTGAC 59 20568443 20568467 CAAAGAAACTGATAGATGTCCTTCC 60 NA Rattus norvegicus 81 Tnfrsf21 ENSRNOG00000011517 ENSRNOT00000015918 2 1 1 80 9 20596907 20596926 CTGAAGAAGTCCTTGACTCC 58 20568496 20596865 CTTCAGGATGTCAATACCGT 57 NA Rattus norvegicus 81 Hddc2 ENSRNOG00000021442 ENSRNOT00000029444 2 1 1 80 1 28583632 28592995 ACTCTGGGAAGAGTATGAGAC 58 28583572 28583592 TGAAGGATCATTTCACACTGG 58 NA Rattus norvegicus 81 Cytip ENSRNOG00000004772 ENSRNOT00000006387 1 1 1 80 3 44163245 44166033 GGAAATCTGCTAACGATAGAGAC 59 44163187 44163205 TAAAGTCTGCAGCTTTGCC 59 NA Rattus norvegicus 81 Fbxl7 ENSRNOG00000024433 ENSRNOT00000031170 3 1 1 81 2 79077699 79077718 AATATCTCCAATGAGGCGGT 59 79071217 79077655 CTTTGGAGCATCCTGACAC 59 NA Rattus norvegicus 81 Pnma1 ENSRNOG00000010553 ENSRNOT00000014018 1 1 1 60 6 107632291 107632309 GACGGTGGATTACTCCCTG 60 107632249 107632267 TACTTTCCAGAGCCCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059632.1 ENSRNOG00000033874 ENSRNOT00000047419 1 1 1 81 4 28246278 28246926 TTAACTTCTGTCGCAACCTG 59 28246216 28246234 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Crb2 ENSRNOG00000025498 ENSRNOT00000037257 3 1 1 81 3 22050102 22050120 ATGTCTCAACGGAGGTAGC 59 22050163 22052340 ACATGTCAGTCCTGTGTATCC 60 NA Rattus norvegicus 81 Mpc2 ENSRNOG00000003150 ENSRNOT00000004206 3 1 1 80 13 83697318 83697336 TGGATTAGCTGACATGGCC 60 83697376 83698396 CAAATAAACCCTGTAGCCATCAG 60 NA Rattus norvegicus 81 Ibsp ENSRNOG00000002158 ENSRNOT00000002938 2 1 1 82 14 6802640 6803211 CTACCCAAGAAGGCTGGAG 60 6802576 6802595 TCCTCCTCTTCCTCTTCCTC 60 NA Rattus norvegicus 81 Wdr81 ENSRNOG00000003243 ENSRNOT00000004365 1 1 1 80 10 62283337 62283357 GAGACAGAGAAGAGGAAGAGG 59 62282543 62283295 TGCAGGCTGTATCAAGGAG 60 NA Rattus norvegicus 81 LOC680112 ENSRNOG00000025618 ENSRNOT00000031984 2 1 1 81 4 70977779 70978362 TCTTCTAAAGACCAGGGTGAG 59 70978405 70978423 TATCTACCACCTGCCACAG 59 NA Rattus norvegicus 81 Fam135a ENSRNOG00000013587 ENSRNOT00000018234 1 1 1 80 9 30301314 30302682 CCAACCACTAATAAGCTTCCC 59 30301254 30301272 GCTGAGTCTTTGCTCTGTG 59 NA Rattus norvegicus 81 Zscan10 ENSRNOG00000021782 ENSRNOT00000036563 1 1 1 86 10 12936376 12936542 AGCTGTGTTGGAATCCCTC 60 12937697 12937715 GGCATTCTGCTTCCAACTC 59 NA Rattus norvegicus 81 Snhg11 ENSRNOG00000036802 ENSRNOT00000055200 1 1 1 99 3 154863626 154863644 ATGACGACTCAGGTTCTGC 60 154863705 154864421 CTGTCAATTCGGGATACTTGC 60 NA Rattus norvegicus 81 LOC684238 ENSRNOG00000021704 ENSRNOT00000071201 3 1 1 80 5 58822378 58822782 GGAAGAACTCAGGACAGCA 59 58822823 58822844 CTGGCAAGGTAGATGTTTATGG 59 NA Rattus norvegicus 81 Polr3h ENSRNOG00000004471 ENSRNOT00000005943 3 1 1 80 7 123153282 123153302 GTCTGTTTGATATCACCAAGC 57 123148970 123153240 ATCGGAAATGCACTTTGGT 58 NA Rattus norvegicus 81 LOC685881 ENSRNOG00000051000 ENSRNOT00000074294 3 1 1 61 6 24563045 24563063 CCTTTCAGTGACCTGAACC 58 24563002 24563020 TTCCCAAGATGCCATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabpa ENSRNOG00000053205 ENSRNOT00000086946 1 1 1 80 11 24298017 24300025 ACAGAAGAAAGCATTGTGGA 58 24300066 24300086 GCCTATTGGTTCATTGATGTC 57 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 3 2 2 80 2 22348103 22349767 GGAAGATAGCAACAATGATGGAG 60 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 1 1 1 80 4 175750058 175751645 GAATCTAGACCACATAACTATCACC 59 175751681 175751701 AACCCTGCTATTAGGTAACCA 59 NA Rattus norvegicus 81 Adgrf2 ENSRNOG00000025603 ENSRNOT00000033075 2 1 1 80 9 20927837 20927858 TCATCTTCTCCTTACTCAATGC 58 20939236 20943416 CTTCTCTTATCTTTGGATCCAGG 59 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 1 1 1 60 9 37057159 37057179 CTCGTTTCAGTGCTTCTGG 59 37057203 37057221 GTCTTGGGATAGTGCTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 1 1 1 80 11 16878173 16878192 GATGAAGACACAAGCAAGGA 58 16874303 16878131 TTCTGAAATCTGGTACACGG 58 NA Rattus norvegicus 81 Olig2 ENSRNOG00000028658 ENSRNOT00000000325 1 1 1 127 11 31389748 31390496 AATCGAATTCACATTCGGAAGG 60 31390584 31390602 AAGATCATCGGGTTCTGGC 60 NA InUTR Rattus norvegicus 81 Jag1 ENSRNOG00000007443 ENSRNOT00000010638 2 1 1 80 3 130087752 130088690 TCCCTGTGAAGTGATTGAC 57 130087690 130087709 TTGGAAGAGATATACCGCAC 57 NA Rattus norvegicus 81 LOC100365588 ENSRNOG00000053283 ENSRNOT00000080171 3 1 1 145 10 87516945 87516963 AACTGCCGTGTTAGATGGT 59 87516818 87516836 TGTCCACAGTAGGATGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhs1 ENSRNOG00000016926 ENSRNOT00000022724 1 1 1 80 1 277284413 277284432 AAGCACAAACCACAGATGAC 59 277284475 277285215 CCGTGATGTTGTTGAGCAG 60 NA Rattus norvegicus 81 Krtap3-3l1 ENSRNOG00000049383 ENSRNOT00000045189 2 1 1 194 10 87475749 87475767 TCCTCTGACAAGTCCTGTC 58 87475573 87475591 ATAGGTGGTGAGGTTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf6 ENSRNOG00000048650 ENSRNOT00000072527 3 1 1 84 X 158280684 158280702 CAACCTTAAAGGTCTGGCG 59 158280474 158280637 CCTATCTCGGTAGGAACTGC 60 NA Rattus norvegicus 81 Cyyr1 ENSRNOG00000001544 ENSRNOT00000002109 3 1 1 94 11 25073380 25078389 TTTATGCAGAGGATTGCCG 58 25073304 25073322 GTAGGCGTAGTAGGAGCAG 59 NA Rattus norvegicus 81 LOC100911713 ENSRNOG00000050660 ENSRNOT00000075612 2 1 1 99 9 20280303 20280321 AAGATGCTGCAATTCGTGC 60 20280382 20281058 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 LOC100363408 ENSRNOG00000047988 ENSRNOT00000073652 2 1 1 88 1 198120568 198120586 CTAAGTTCGAGGGAAAGCC 58 198120893 198120911 CTCAAAGGCATGGATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Nipsnap3a ENSRNOG00000039113 ENSRNOT00000059828 3 1 1 80 5 69817376 69817394 ATGCCCATGCTAATCAAGG 58 69817436 69819881 GAACATGAACTCTGTTGAGCA 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809,ENSRNOT00000015127 2 2 2 80 16 54474583 54474603 AAAGGAAATGTGGCTAACTGG 59 54472680 54474542 TTCAGAAGGTGGTTCTCTGG 59 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 2 1 1 85 7 136380939 136380958 CACATGCAGTTCAAGATTCC 58 136381003 136401292 CCGTAGTTAAACCATTTACCTG 57 NA Rattus norvegicus 81 Psmb6 ENSRNOG00000019551 ENSRNOT00000026507 1 1 1 80 10 57133311 57133332 CTATGGCTATGTTGATGCTACC 59 57133373 57133504 AAAGCAAGAGCATTGGCAG 59 NA Rattus norvegicus 81 Otp ENSRNOG00000010560 ENSRNOT00000014036 1 1 1 95 2 24548156 24548174 TTCGCCAAGACTCACTACC 59 24548233 24554167 ATTCTGGAACCAGACCTGC 60 NA Rattus norvegicus 81 Syp ENSRNOG00000059720 ENSRNOT00000085907 2 1 1 91 X 15703324 15704025 CCTATGATGGACTTTCTGGCT 60 15703253 15703271 ATCTTCACATCGGACAGGC 60 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000002812,ENSRNOT00000065535 1 3 3 80 11 31109186 31112873 CACCACAGCTACAACAGGA 60 31107683 31107703 ATGTTGGCTCTTGTTTGACAC 60 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 3 2 2 80 1 279649156 279649177 ATGGAAGAAGATATCAAGCTGG 58 279649217 279658850 TTCCATTGACTTCATCTCCC 57 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 2 3 3 80 1 87004747 87005048 GATGAATGTCTGTGTCTCCA 57 87005091 87005109 TTGTAACTGCAAGATCCGT 57 NA Rattus norvegicus 81 LOC102551744 ENSRNOG00000033125 ENSRNOT00000045349 3 1 1 60 6 3375662 3375680 TTTGCCTGCAATGGTACTG 59 3375701 3375722 CCTGTAGCTGAATTACTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025299.1 ENSRNOG00000047664 ENSRNOT00000072321 3 1 1 80 16 32299434 32299465 TTTGGCCACATACATGAAGG 59 32299342 32299361 GTGACGTTGTAGACTCTTCG 58 NA Rattus norvegicus 81 Iqcf5 ENSRNOG00000013164 ENSRNOT00000017570 2 1 1 149 8 115213530 115213548 GTGATGGGAACATCTAGCC 58 115214501 115214519 GAATGATCCACGCGTTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Plac8 ENSRNOG00000002217 ENSRNOT00000003012 3 1 1 105 14 10706331 10706349 TCTTGGATGTCAAGTGGCA 59 10706418 10709843 AATAGACCCAGGAATGCCG 60 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000019997 1 1 3 80 2 208133787 208134863 CACCATCAAGAACCACGAG 59 208134905 208134925 GATGGGTAGTTCTGCATTGAG 59 NA Rattus norvegicus 81 Rybp ENSRNOG00000005353 ENSRNOT00000007185 3 1 1 89 4 132740748 132740767 GTCTGCACCTTTAGGAACAG 59 132694064 132740696 ATTGATGCGAGGTTTCCTG 58 NA Rattus norvegicus 81 LOC100361655 ENSRNOG00000003266 ENSRNOT00000004356 3 1 1 80 10 91282836 91282856 TGGAATCGTAAGCTTCAAGGA 60 91282692 91282794 CCCTTCATTTGGCTCATGC 60 NA Rattus norvegicus 81 Ccl9 ENSRNOG00000028548 ENSRNOT00000029184 1 1 1 83 10 70788181 70788199 GAAGCCCTTTCATACTGCC 59 70785290 70788134 GTCTCTGTCGCATGTACGA 60 NA Rattus norvegicus 81 Nkx6-1 ENSRNOG00000002149 ENSRNOT00000002928 1 1 1 80 14 9558404 9558422 GTACTTGGCAGGACCAGAG 60 9558465 9560633 TTCTGGAACCAGACCTTGAC 60 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843 3 1 3 143 4 149957229 149970694 TCGTCTTCCTGAAGGTTGAG 60 149970800 149970818 CGGGAGGAAGGTAGAAGTG 59 NA InUTR Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 1 1 1 107 20 4283218 4298980 TGCACTTTCTACAATCTTCCC 58 4283068 4283086 GTTAGAGTTCAGCACCACC 58 NA Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 2 1 1 107 20 4283218 4298981 CTGCACTTTCTACAATCTTCCC 59 4283069 4283087 TTAGAGTTCAGCACCACCG 60 NA Rattus norvegicus 81 Sos1 ENSRNOG00000007106 ENSRNOT00000009359 1 1 1 80 6 3107967 3109354 CCCATCCAAGATTATGTCTAAGC 59 3107909 3107929 GGTGAATAGGCTTTCGATGTG 60 NA Rattus norvegicus 81 Tmem33 ENSRNOG00000002254 ENSRNOT00000003128 3 1 1 85 14 42541998 42551436 TGCTCTTTAGTGGTCAAGGA 59 42541932 42541955 GGGATTTCTTCTAGAGGAATATCG 59 NA Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 1 1 1 110 2 28054717 28054736 ATAACCACGGTTCCCTACTC 59 28054809 28058630 GTCAGAGTGAGCTCACTCG 60 NA InUTR Rattus norvegicus 81 Lpcat2 ENSRNOG00000016643 ENSRNOT00000022359 2 1 1 80 19 15507880 15516616 AAGTTGAGTTTATGCCTGTGC 60 15507820 15507838 AATTCCGGACTCTACTGGC 59 NA Rattus norvegicus 81 Trpm1 ENSRNOG00000015829 ENSRNOT00000021262 2 1 1 80 1 125058011 125060451 GAATGGAAGATGATGAGCCC 59 125060489 125060512 CCACATCTATATCAATCTCCTCCT 59 NA Rattus norvegicus 81 Bcl2l15 ENSRNOG00000037149 ENSRNOT00000056068 3 1 1 80 2 206315034 206315052 ACAAGTTCAACGGAGAGCT 59 206315096 206317639 TGAGTACAGTTCCTGCCTG 59 NA Rattus norvegicus 81 LOC100364265 ENSRNOG00000012088 ENSRNOT00000072844 2 1 1 80 5 16782501 16782519 GAGTAAGAACAAGCAGCCA 58 16781991 16782459 AGTAATAAATCTCCTGGTGGC 58 NA Rattus norvegicus 81 Wdr11 ENSRNOG00000020430 ENSRNOT00000027704 1 1 1 80 1 202806388 202808817 GCAGGAGTTAGTAGAGCCAG 60 202808857 202808878 TGTAGTAGGAAGGCTTTCAAGG 60 NA Rattus norvegicus 81 Snx20 ENSRNOG00000014202 ENSRNOT00000019130 3 1 1 81 19 19399771 19399790 CCAATGCATAACAAGGACCA 59 19399834 19401518 ATCTTGGGCTTCTTCTGGG 59 NA Rattus norvegicus 81 Timd4 ENSRNOG00000038894 ENSRNOT00000059448 3 1 1 80 10 31889968 31889988 GACCATATCTACAGACACAGC 58 31890028 31911275 TCTGAAAGGTAACGGAAAGAC 58 NA Rattus norvegicus 81 Stk33 ENSRNOG00000014590 ENSRNOT00000019597 2 1 1 80 1 173921849 173921869 AACAGCTCATGAAAGTAGACC 58 173911047 173921807 GAGTATTGCCTGTCAACCA 58 NA Rattus norvegicus 81 AABR07007675.1 ENSRNOG00000058886 ENSRNOT00000080942 2 1 1 128 2 23257962 23257982 CGAGGAAGTAAACGATATCGA 58 23258296 23258314 TAAAGCTCAGTGACTCGTG 57 NA DesignNoJunction Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482,ENSRNOT00000024445 1 2 2 80 9 94903150 94904470 GATAGTGCTGGAGCTTACCT 59 94904509 94904531 CCGTAATCGATAATCATCCACAG 59 NA Rattus norvegicus 81 Sdhaf4 ENSRNOG00000028087 ENSRNOT00000035033 1 1 1 80 9 30249444 30251342 GAGCAACAAGATCATCTCTTCTG 60 30249386 30249404 CTTGCTTTGAAGGCTCAGG 59 NA Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 1 1 1 60 9 97355984 97365588 AGGTCACTTGGTTGCTCTC 60 97365610 97365630 AGGTTCCACATAGTCAAACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kap ENSRNOG00000005858 ENSRNOT00000007806 2 1 1 99 4 167551951 167552099 GCATACAGATTTCTGAGCTCTC 59 167550151 167550169 AATGGAAACTCCACTGTGC 58 NA Rattus norvegicus 81 Rrp8 ENSRNOG00000018766 ENSRNOT00000025651 2 1 1 80 1 170575420 170575646 TCATCTACAAGGACCTGACC 59 170575359 170575377 CTTTGGGTCCTACTCGAGG 59 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 2 2 2 90 1 99534190 99537395 ATCAGAGGTGTGGTCAAGG 59 99537449 99537467 ATTACTCTTGATGCGTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843,ENSRNOT00000066777 3 2 2 80 3 1977124 1977142 GAGCTGATTTCAGACTCCG 58 1968550 1977082 CACCTCTCCATCCTTATTGTC 58 NA Rattus norvegicus 81 Cdc34 ENSRNOG00000060530 ENSRNOT00000088330 1 1 1 92 7 12902741 12902759 CATCTCCATCCTCCATCCC 59 12902539 12902686 AGGATGGTCCTGACATTCTG 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892,ENSRNOT00000048140 1 2 2 80 10 89669853 89669871 GTGTACTCTGCTCTTCCGA 59 89669915 89671309 GGCAATCACCACCTTTCTG 59 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 2 2 2 80 11 32690007 32697744 CACATCATTAAGATTGTGGCC 58 32697785 32697804 GTTCAAGTACCTCCAAATGC 57 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 3 2 2 80 11 32690007 32697745 CACATCATTAAGATTGTGGCCA 59 32697784 32697804 GTTCAAGTACCTCCAAATGCC 60 NA Rattus norvegicus 81 Actr5 ENSRNOG00000023989 ENSRNOT00000032943 1 1 1 80 3 155129403 155129421 ATGTACCCAGGCATGAAGG 60 155129465 155131242 AAGCTGAACCTGGAAGGAG 59 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076782 3 1 2 60 1 134999674 134999694 TGGAACACATCAATCTACACC 58 134999715 134999734 CCAGGAAAGTCAAACTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 3 2 2 80 5 135442343 135442484 GACTCCGGAGATTATGGCA 59 135442525 135442546 TCCTCTGTCAGTCTCTTTAGAG 59 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 2 2 2 80 8 116514282 116514301 GGAGGCAATGTTGACTACAG 59 116514138 116514243 CTGGTAATCCTGTGAGTATTGAG 59 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 1 1 1 145 7 74990055 74990073 TGTTCAACCACCAAAGCAG 59 74990516 74992339 AAACCACCAATCTCTTAGTCCT 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684,ENSRNOT00000092063 2 2 2 80 1 251237268 251239543 CTACATCAGAAGAAAGTCATGACG 60 251237211 251237230 TCATCTTCTCAATTGCCCGA 60 NA Rattus norvegicus 81 LOC100361476 ENSRNOG00000016336 ENSRNOT00000022008 3 1 1 60 20 45445047 45445066 CACCTTTGACAAACACGGAG 60 45445006 45445026 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp341 ENSRNOG00000017086 ENSRNOT00000047286 3 1 1 89 3 150148897 150148916 GCTACCAACAGCATCTACAC 59 150148967 150150275 GATGTATGTGGAGATCTGGC 58 NA Rattus norvegicus 81 LOC100909885 ENSRNOG00000049554 ENSRNOT00000072517 2 1 1 60 2 35178555 35178575 GGATTAACAAAGCAGCCTGAG 60 35178595 35178615 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc28 ENSRNOG00000002026 ENSRNOT00000002771 2 1 1 87 11 31771354 31772781 TCCGGTCTGTGAAGATCAC 59 31771285 31771303 GTAGTCTCAGGATCCGAGC 59 NA InUTR Rattus norvegicus 81 Aipl1 ENSRNOG00000007889 ENSRNOT00000010533 1 1 1 80 10 58608825 58608845 GTGTCAAGAAGACCATTCTGC 60 58608199 58608785 GGAAATGAAAGGTCACTCTGG 59 NA Rattus norvegicus 81 Mvk ENSRNOG00000049604 ENSRNOT00000073774 2 1 1 81 12 47918397 47919332 CTGTGGTCCAGTAGCTCTG 60 47918334 47918352 GCTCACTTTCCCATTGCTC 59 NA Rattus norvegicus 81 Zfp133 ENSRNOG00000027955 ENSRNOT00000031623 1 1 1 114 3 138597816 138609108 TGCTGGAAGGTACACATGG 60 138609184 138609204 AGTTCTCCAACATCACCTCTC 60 NA Rattus norvegicus 81 Krt23 ENSRNOG00000011907 ENSRNOT00000016657 3 1 1 80 10 87397217 87397238 AAGTGATATCCATGAGCTGAGG 60 87394533 87397177 AAAGCGGATTTCCTGTTGTG 60 NA Rattus norvegicus 81 Andpro ENSRNOG00000031840 ENSRNOT00000049635 1 1 1 80 3 143895535 143896323 TTCTATAACCTAAAGCGGACTCC 60 143895477 143895495 TAGGAGCTTCCTGCATCTG 59 NA Rattus norvegicus 81 Olr214 ENSRNOG00000048643 ENSRNOT00000067201 2 1 1 60 2 4859123 4859143 CTCACTTCAGTTATCACTCCC 58 4859162 4859183 ATATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055492.1 ENSRNOG00000056878 ENSRNOT00000077369 3 1 1 84 7 4127105 4127124 TAAAGCCATCAACACCAAGG 59 4127039 4127057 GAGCTAGGTCCTTTGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07011744.1 ENSRNOG00000061747 ENSRNOT00000089063 3 1 1 132 2 167878151 167892233 TTCCCTTTGACAACAGAGGA 59 167878038 167878056 AGTTTCTCCTCAGAGCTGG 59 NA Rattus norvegicus 81 Rmt1 ENSRNOG00000013373 ENSRNOT00000017860 3 1 1 87 1 218374046 218374064 CCATACACTGCAAAGTGGG 59 218373849 218373995 AGAGCCTTTCTGTGTCCAC 60 NA InUTR Rattus norvegicus 81 Cacna2d4 ENSRNOG00000008031 ENSRNOT00000010746 2 1 1 80 4 151304539 151305616 ATGTGTACAACAAAGACCCA 57 151305657 151305677 GAAAGTTCTCCACAAACACAG 58 NA Rattus norvegicus 81 Rev1 ENSRNOG00000018623 ENSRNOT00000067197 2 1 1 80 9 44760168 44760186 GCTAAGCAGAAGGATGGGA 59 44754717 44760127 AGCAGAAGGATCTGTATATCCA 58 NA Rattus norvegicus 81 Foxl1 ENSRNOG00000047125 ENSRNOT00000074430 1 1 1 60 19 53055914 53055933 TTATAGCCATGGCGATCCAG 60 53055956 53055974 TGGTAGATGCCGTTCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055673.1 ENSRNOG00000048102 ENSRNOT00000075705 1 1 1 80 7 7675455 7675480 AGATACGAAGATCCTACTGATGG 59 7675517 7675538 TAGGACAGAATTACCAAAGCCA 60 NA Rattus norvegicus 81 Slc38a3 ENSRNOG00000016827 ENSRNOT00000023623 1 1 1 80 8 116413484 116414044 TCATCCTCTTCCTGTTCCTG 59 116413423 116413441 TCCCAGAAGACTTGAGGAG 58 NA Rattus norvegicus 81 Lhx4 ENSRNOG00000003595 ENSRNOT00000067253 1 1 1 80 13 73354002 73356920 CCAAGCAGAACGATGACTC 59 73353939 73353959 CATTCTTTAGTGTCTCCAGCT 58 NA Rattus norvegicus 81 Arhgap30 ENSRNOG00000004192 ENSRNOT00000005619 2 1 1 80 13 89789481 89789500 CTCATTTAGTGCCCAAACCA 59 89789542 89790719 ATGTCCTTAGACCTCAGCAG 59 NA Rattus norvegicus 81 RGD1561281 ENSRNOG00000061130 ENSRNOT00000089610 1 1 1 136 10 87541762 87541780 GATCCTTCTCCTCCCAGAG 58 87541644 87541662 GATGGGCCTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppox ENSRNOG00000003567 ENSRNOT00000004896 1 1 1 80 13 89651008 89651026 GTACCATCCAAGCTGTGTC 58 89650868 89650964 GATGTCCAAATCCCTGCAC 59 NA Rattus norvegicus 81 Krt42 ENSRNOG00000034087 ENSRNOT00000046956 2 1 1 82 10 88170174 88170192 CCACAATCGACAATGCCAG 60 88170003 88170128 TGTCTCATACTTGGTGCGG 60 NA Rattus norvegicus 81 Tmeff1 ENSRNOG00000008034 ENSRNOT00000065775 1 1 1 80 5 64346746 64346767 AATCATCGTGTAAGTATGGAGG 58 64346807 64352386 TTGTATGGCACTGAAACTGG 59 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607,ENSRNOT00000040162 2 2 2 80 8 55464564 55464582 AAACAGCACAACAGCACAG 60 55458429 55464524 CATATACCAGTTCCTGAACTGTG 59 NA Rattus norvegicus 81 Dlx2 ENSRNOG00000001519 ENSRNOT00000002076 1 1 1 124 3 58181653 58181671 AACAACGTCTCCTACTCCG 59 58181143 58181565 TCAAGGTCTTCCTTGTCGG 59 NA Rattus norvegicus 81 Dlx2 ENSRNOG00000001519 ENSRNOT00000002076 2 1 1 126 3 58181654 58181673 TCAACAACGTCTCCTACTCC 59 58181143 58181565 TCAAGGTCTTCCTTGTCGG 59 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 3 1 1 207 1 64129204 64129222 CAAACTCAACCTCCCTGGT 60 64129393 64130588 TTTCTAGGGAAGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502,ENSRNOT00000087274 3 5 5 81 X 159167283 159167301 TGCTTTGACAAGTTCTGCG 59 159167343 159168350 TCTTATAGTGCACCTCCTTAGC 60 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000049901 ENSRNOT00000071299 2 1 1 83 3 73328370 73328388 CCCACCACTCATTAAGCTG 58 73328432 73328492 CTGGAAAGATTTAAGCTTGCTG 58 NA Rattus norvegicus 81 AABR07067419.1 ENSRNOG00000050591 ENSRNOT00000072642 1 1 1 80 9 44502102 44503899 GATGAATTGTGGGATCCACG 59 44502041 44502060 TTGATGAGGATCCGGTAAGG 59 NA Rattus norvegicus 81 Actc1 ENSRNOG00000008536 ENSRNOT00000011773 2 1 1 80 3 105508385 105509268 CTTTCATTGGTATGGAGTCTGC 60 105508326 105508346 CTTTGCGGATATCGATGTCAC 60 NA Rattus norvegicus 81 Atp1a2 ENSRNOG00000007290 ENSRNOT00000058143 3 1 1 80 13 90669463 90669483 CTTCTCCTACTACCAGGAAGC 59 90669191 90669421 ATGACCAGAGCTTGCTGAG 60 NA Rattus norvegicus 81 Rnf13 ENSRNOG00000029209 ENSRNOT00000068606 3 1 1 92 2 148037240 148037258 GAGATGAGTACGACGTGTG 58 148037314 148037796 TGCAATGATAAGCATGGGA 57 NA Rattus norvegicus 81 Kif1c ENSRNOG00000031364 ENSRNOT00000041493 1 1 1 80 10 57324637 57324655 CTTTAATGCCCGTGAGACC 59 57324697 57325107 TTGGGATTAATGATGGAGGTG 58 NA Rattus norvegicus 81 Nuak1 ENSRNOG00000008061 ENSRNOT00000010636 2 1 1 89 7 25039653 25039671 CTATGAGCTGCAAGAGACC 58 25039724 25075303 TTTATAGCAACCACTCGGC 58 NA Rattus norvegicus 81 Eef2kmt ENSRNOG00000002876 ENSRNOT00000003843 1 1 1 82 10 10536589 10536890 CTATTTGCTGCCTTCAGGAG 59 10536935 10536953 ATGTAACCAAGCCTGTGGT 59 NA Rattus norvegicus 81 Ces1a ENSRNOG00000039725 ENSRNOT00000060929 1 1 1 80 19 15353597 15353615 ACTCTTGGCTACAACCCTG 59 15355176 15358909 GTCAGGAAAGGGTAGCTCTC 60 NA Rattus norvegicus 81 Mtdh ENSRNOG00000006870 ENSRNOT00000009989 1 1 1 80 7 72809708 72809729 CTTCTGATTATCAGTGGGATGG 58 72809767 72817260 CAGAAGACAAACCATTTAACCC 58 NA Rattus norvegicus 81 Ptcd2 ENSRNOG00000028403 ENSRNOT00000034992 2 1 1 80 2 29579841 29583175 GTTAGCTCTGAATCAGAACCAG 59 29579782 29579802 GTACACGTTATGCTTTCTGGA 59 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 2 1 1 60 2 208225836 208225860 GTACTCAGTATATGTTCTGTAGACC 58 208225800 208225821 TATGTGACCAAAGGAACAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164 ENSRNOG00000000304 ENSRNOT00000000334 1 1 1 80 20 46253233 46254470 TGCCATGAAGCAAATAAGACC 59 46254511 46254530 AGAACAGGAGTCAGTACTGG 59 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000049796 ENSRNOT00000074250 3 1 1 60 8 41366850 41366870 TCCTCTCATTTACAGCCTCAG 59 41366889 41366910 CTTTAAGGTTCTCTTCACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r8 ENSRNOG00000059550 ENSRNOT00000089155 1 1 1 80 5 151020918 151026827 GAGACAAGCTAATTGAGAAGCTG 60 151020860 151020878 TAAAGTCGCACAGATCGGG 60 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000064611,ENSRNOT00000022074 1 2 2 80 8 49715460 49715767 TCGAGTATGACTATGAAACCGT 59 49715808 49715826 GGAGAATGAGGAGTCCCAC 59 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327,ENSRNOT00000020787 3 2 2 70 1 71384670 71384688 TCGGGATATGACAGAAGGC 59 71383505 71384637 CGGTTCCTAAGGGAATTACC 58 NA DesignNoJunction Rattus norvegicus 81 Acap1 ENSRNOG00000015674 ENSRNOT00000021357 2 1 1 80 10 56501227 56501246 CGAGCATTAGATTATGCCCT 58 56500914 56501044 CAAACGCAGTATGAACTCCA 59 NA Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 1 1 1 80 7 139050714 139050732 CTTGGAACCTGATTCTGCT 57 139049634 139050151 TGGTGTTGTAGTAACTGGAC 57 NA Rattus norvegicus 81 Wfdc10 ENSRNOG00000026067 ENSRNOT00000036020 3 1 1 89 3 161121831 161122738 GATATGAAGTCCAAAGTCGCTC 59 161122788 161122806 CTTGGTCCGATTCACAGTG 59 NA Rattus norvegicus 81 Krt13 ENSRNOG00000014070 ENSRNOT00000018851 3 1 1 80 10 88032194 88032511 AACACTGGAGGAAATAGCAC 58 88032133 88032151 ATACTTTCGGAAATCCGGG 57 NA Rattus norvegicus 81 Plekhg1 ENSRNOG00000016011 ENSRNOT00000021471 2 1 1 80 1 40503556 40505791 GTGTTGAAGACCAGTGAAACC 60 40510168 40510186 TACGGCAGAAGTTAGCTGG 60 NA Rattus norvegicus 81 Glb1 ENSRNOG00000010196 ENSRNOT00000013632 3 1 1 81 8 122486884 122486903 TAAAGAAGTCCCAGAAGGCC 60 122486945 122490261 CGTCTTGAACTTTCTCAGAGC 59 NA Rattus norvegicus 81 Ccdc160 ENSRNOG00000046484 ENSRNOT00000071222 3 1 1 60 X 140176260 140176278 AAGAAATGGACCGAAGCGA 60 140176301 140176320 CCAGCTCTTCATTCAGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560171 ENSRNOG00000043487 ENSRNOT00000064172 3 1 1 60 X 143682265 143682284 CAAGATGGAGGTATTGCCAG 59 143682224 143682244 TCTGATCATCTTCAAGGAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hykk ENSRNOG00000013419 ENSRNOT00000018003 1 1 1 80 8 59511150 59511168 CTGGATTTCCAACAGCCTC 59 59511210 59511747 TTTCAGATCCACTGTCAATGG 58 NA Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 2 2 2 80 7 123381301 123401450 ACATCGACGAGATGCTACAG 60 123401491 123401511 AGGAGCTACATAGTTGCTCTG 59 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 1 2 2 80 8 82339041 82339059 ACTTGGTGCTGAAGATTGG 58 82337333 82339001 CTTCAGAAAGATGACCCTTATGG 59 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076582 2 1 3 60 10 87950086 87950104 CAAGTCTCCATTTCCTGCC 59 87950044 87950063 GTTGTCTCCTTGCATTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052807.1 ENSRNOG00000047074 ENSRNOT00000007835 2 1 1 82 3 76314628 76314648 CTTTCATGGGATCATTCTCCT 58 76314565 76314587 CTGTATAAAGAGCGACTTTCAC 57 NA Rattus norvegicus 81 RGD1561145 ENSRNOG00000042628 ENSRNOT00000067761 1 1 1 81 16 9042022 9043571 CTGAGATCGATTTCAAGTACGT 58 9043613 9043631 CAAATCTTCAGGGCAAGGA 58 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631,ENSRNOT00000090232 1 2 2 80 5 156512070 156516022 TTCCCATTTAAAGCAGAGTCC 58 156516063 156516082 GATGTCCAATAGGAACTCCC 58 NA Rattus norvegicus 81 Kcne5 ENSRNOG00000019176 ENSRNOT00000025923 2 1 1 77 X 113584201 113584222 ACGATGCTTATCTCTACATCCT 59 113584145 113584163 GAGTGTAGGCCAGGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sctr ENSRNOG00000049766 ENSRNOT00000072088 3 1 1 80 13 36082769 36083943 ACAAACCATTATAAGCGCCTG 59 36083983 36084003 GAAGGCGAAGACAATGTAGTG 59 NA Rattus norvegicus 81 Sgtb ENSRNOG00000011937 ENSRNOT00000016129 3 1 1 80 2 34196920 34199521 AAGGATGAAGGCAATAACCA 57 34199564 34199582 ATCCAGTTCTATTGCCTGC 58 NA Rattus norvegicus 81 Fam91a1 ENSRNOG00000008271 ENSRNOT00000011797 1 1 1 80 7 98328845 98329065 ATATTCCAGGGTTATGATCGGT 59 98329104 98329124 CGTGAGCACATTTGATGTAGG 60 NA Rattus norvegicus 81 Spns2 ENSRNOG00000057040 ENSRNOT00000078272 2 1 1 80 10 59018239 59022997 CCCTCAGCAGTACTTCTGG 60 59018177 59018196 GGTGCTATGGTGGAATAGCT 60 NA Rattus norvegicus 81 Clcn4 ENSRNOG00000003533 ENSRNOT00000059270 1 1 1 80 X 25051562 25057965 TCTGGCATACCTGAGATAAAGAC 60 25058000 25058023 CTTGATTAGAAGAGTCCATTTCCC 59 NA Rattus norvegicus 81 Clcn4 ENSRNOG00000003533 ENSRNOT00000059270 3 1 1 80 X 25043566 25043585 GGGACCTATGAAGACTTCCA 59 25043623 25045224 GCTGGTTATCTTTCTATGTCTGTC 59 NA Rattus norvegicus 81 RGD1564285 ENSRNOG00000050249 ENSRNOT00000071008 1 1 1 60 7 20069448 20069466 CCAGACACAATGTAGCCAG 58 20069406 20069426 TTCTTAGTACCGTATAGGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 2 1 1 60 X 115721330 115721350 TATTACAGTTCATCTCGCAGG 58 115721371 115721390 TCTTCTGCTCTAGGATTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aarsd1 ENSRNOG00000020658 ENSRNOT00000028047 3 1 1 81 10 89324466 89324485 AGTTGTTACCATCGAGGGTG 60 89324166 89324425 CTTAATGACCTGAAGGTCACTG 59 NA Rattus norvegicus 81 LOC100909882 ENSRNOG00000048892 ENSRNOT00000074742 3 1 1 60 2 46211321 46211341 TGTGGTCTTTGTTCTAGTTGG 58 46211363 46211381 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 1 2 2 81 10 89403466 89403486 GGAGGAAAGTGGATAGTTAGC 58 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 3 3 3 120 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050905 5051059 CGGACTCCATCAACCTCAG 60 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445,ENSRNOT00000081780,ENSRNOT00000042331 2 3 3 80 12 43465604 43465823 GTTGAAGTCATTGTCGGTGG 60 43465543 43465563 AGGAACCGGGATATCATTCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305,ENSRNOT00000037662 2 2 2 80 8 118412868 118412891 GTTGTAAAGTGGAGTCCATATTCC 60 118412925 118414559 TGGATATGTCTACATTCTGAGGTC 60 NA Rattus norvegicus 81 Rpl31 ENSRNOG00000013508 ENSRNOT00000033733 3 1 1 80 9 46089219 46090073 GGAATAAGGAATGTTCCGTACC 59 46090112 46090132 GAGCTTGTTTGGTGAATCCTC 60 NA Rattus norvegicus 81 Asf1b ENSRNOG00000005115 ENSRNOT00000006964 2 1 1 80 19 25090559 25090580 TATGTCAACAATGAGTACCCAG 58 25090621 25091483 GTTCCGCTGTAACTGAGAG 58 NA Rattus norvegicus 81 Myh10 ENSRNOG00000002886 ENSRNOT00000065895 2 1 1 80 10 55352464 55352485 ATAACTTTCAGGAGACCATGGA 59 55352523 55352723 ACACGACTTTAAGCATTGAGAG 59 NA Rattus norvegicus 81 Nipa2 ENSRNOG00000012690 ENSRNOT00000018028 2 1 1 92 1 114359644 114361094 CATGAGAGCAGGTCAAGGA 59 114354311 114354329 AAATTGGCCACTTCACCAG 59 NA Rattus norvegicus 81 Arhgef4 ENSRNOG00000014035 ENSRNOT00000018935 2 1 1 80 9 41298037 41298058 AAGATCTGCAAGTATCCTCTCC 60 41298096 41298503 CTCGACATTCTTAAAGTCCCTG 59 NA Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 1 1 1 80 2 210888869 210889322 AGTATGACGGCAACAATTCC 59 210889363 210889383 CATCTTTCCTCATGTTGAGGT 58 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 1 2 2 80 3 80575061 80575079 CAGCAGGTTCTCCAAACTC 59 80575122 80575279 GGCAGATACCTGTACAAGGA 59 NA Rattus norvegicus 81 Rpl27 ENSRNOG00000020674 ENSRNOT00000028060 2 1 1 80 10 89356314 89356332 ATGTGTTCAGAGACCCAGC 60 89356376 89356491 TCCCTGTCTTGTATCGCTC 59 NA Rattus norvegicus 81 Strip1 ENSRNOG00000018293 ENSRNOT00000025036 2 1 1 80 2 210399478 210399667 CTGCCTCAGTATATGATTGCTC 59 210399419 210399438 GTTGATGGAGTCTGTCTTGG 58 NA Rattus norvegicus 81 Ankk1 ENSRNOG00000025037 ENSRNOT00000068040 3 1 1 80 8 53753732 53753752 GTCTTACAAGTCATCGCTGAG 59 53752289 53753134 TCTGAGTCTGCACTGTCTG 59 NA Rattus norvegicus 81 Nelfa ENSRNOG00000015474 ENSRNOT00000021593 1 1 1 80 14 82114290 82114310 CTGCTGGATATTTCTGAGCTG 59 82114348 82114807 CACTTCTGTGTCTAAAGTCTTCC 59 NA Rattus norvegicus 81 AABR07054117.1 ENSRNOG00000024844 ENSRNOT00000066588 2 1 1 82 3 141927565 141927700 AACCATAAGGATTGGCAGC 58 141927746 141927764 GATTTAGCTGAACCAGGCC 59 NA Rattus norvegicus 81 AABR07054117.1 ENSRNOG00000024844 ENSRNOT00000066588 3 1 1 82 3 141927564 141927700 GAACCATAAGGATTGGCAGC 59 141927745 141927763 ATTTAGCTGAACCAGGCCT 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687,ENSRNOT00000075057 2 2 2 80 2 31750500 31750520 TCCTTAGCTCAGTACAATCCC 59 31750222 31750460 TTTGACAACTTGATCCTGCTG 59 NA Rattus norvegicus 81 Galnt12 ENSRNOG00000008099 ENSRNOT00000011112 2 1 1 80 5 62735411 62735430 GTGCTGACATTTCTGGACTG 59 62735471 62738779 CTCCTTCTCATGGATCCTCTG 60 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 2 2 2 80 10 59575155 59575358 GGAAAGCCCAAGGTATTCG 59 59575400 59575420 GACACCAACCAAAGATCTCAC 59 NA Rattus norvegicus 81 Higd1a ENSRNOG00000019428 ENSRNOT00000064114 2 1 1 85 8 130484252 130484276 GAAGATGTCTATTCACTTGATCCAC 60 130483582 130484211 TGGAATAGCCCATACCAAGAG 59 NA Rattus norvegicus 81 Nkd1 ENSRNOG00000014293 ENSRNOT00000019301 2 1 1 80 19 19443852 19445637 GCTCAAGTTTGAAGAACTGC 58 19443791 19443812 AAGTCATACAGAGTGAAAGTCC 58 NA Rattus norvegicus 81 Hscb ENSRNOG00000037508 ENSRNOT00000056798 1 1 1 80 12 51881732 51882772 GACTATATCTTCTAAAGCTCCAAGG 59 51882809 51882828 TTTCCACAAGGAACTGACTG 58 NA Rattus norvegicus 81 Ube2q2 ENSRNOG00000014529 ENSRNOT00000019539 2 1 1 80 8 59740758 59743239 ATTTAAATGGTGCGGTATCTGG 59 59743279 59743298 TCTGTGATCTGTAGACGTCC 59 NA Rattus norvegicus 81 Nhlrc2 ENSRNOG00000016948 ENSRNOT00000022788 3 1 1 80 1 277356155 277356175 ATCAGTATCTGCAGAAGGTGG 60 277356213 277359700 TATTCAGCCATTCTAGTCCTTCC 60 NA Rattus norvegicus 81 Dido1 ENSRNOG00000009936 ENSRNOT00000013189 2 1 1 80 3 176175358 176175905 ATCTCAGTGAGGATTTGCCA 59 176175297 176175315 GTTTGCCAACGTAATCCCA 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076499 3 1 3 149 1 167337332 167347349 CTGAGCTGGTCACTACTTCC 60 167337202 167337223 TTGTATAGCAGATGAGAAGGCA 59 NA InUTR Rattus norvegicus 81 Fam222a ENSRNOG00000001198 ENSRNOT00000001588 3 1 1 142 12 47767028 47767046 TGACCTGTCCAAGCAAGAG 60 47749335 47749354 GAAGATCTTGATGGACAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_1_1736.2 ENSRNOG00000051224 ENSRNOT00000077009 1 1 1 60 1 167355701 167355721 TTAAGTTGGACTAAGCGACCT 59 167355661 167355683 ATGATTGGTATCACTGGGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd10 ENSRNOG00000010147 ENSRNOT00000013585 1 1 1 81 2 173977841 173978955 CGTAGAAGAGTACATGATTGAACG 60 173977783 173977803 GAGAATCTGTTTAAGTGCCCG 59 NA Rattus norvegicus 81 LOC100909517 ENSRNOG00000046230 ENSRNOT00000068228 1 1 1 60 X 24629618 24629638 AGGGTCAGCATAATCAAATCC 58 24629654 24629678 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pwwp2b ENSRNOG00000036649 ENSRNOT00000023619 2 1 1 65 1 211582228 211588438 AAAGTCTGGTCTCTTTGGC 58 211588467 211588485 ATGGCAGAGGAGTTGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 3 1 1 60 10 87656480 87656500 TCCTTTGATGACCTGAATCCT 59 87656519 87656540 GTGTATACTCATAGACAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911393 ENSRNOG00000050465 ENSRNOT00000073677 3 1 1 60 X 119532857 119532877 AGAATTCAATCACCCAGTGGA 60 119532817 119532838 CCTTCATATAAGGTTCCTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000047104 2 1 2 93 10 87753385 87753403 CTAGCTGTGGAGTGTCCAG 60 87753310 87753328 GTAGTCTGACAGCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Det1 ENSRNOG00000018515 ENSRNOT00000065457 2 1 1 89 1 140531986 140532004 TCTGGATGAGAACCACCTG 59 140528971 140531933 ACAAAGAAGGAGGCCTGAG 59 NA Rattus norvegicus 81 Det1 ENSRNOG00000018515 ENSRNOT00000065457 3 1 1 90 1 140531986 140532005 TTCTGGATGAGAACCACCTG 60 140528971 140531933 ACAAAGAAGGAGGCCTGAG 59 NA Rattus norvegicus 81 Trim62 ENSRNOG00000049496 ENSRNOT00000072908 1 1 1 81 5 147094527 147094803 CACAACCACTTCAGGACTC 58 147094848 147094866 TGGACACCACTACTGAAGG 59 NA Rattus norvegicus 81 Olr120 ENSRNOG00000049485 ENSRNOT00000046685 3 1 1 60 1 168802976 168802995 CTTTGACTGCTACATTGCCA 59 168802935 168802954 GTCATTGGTTAGGATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aoc3 ENSRNOG00000051307 ENSRNOT00000076820 1 1 1 83 10 89256079 89256097 ATACTCAGCTTTGCTGGGA 59 89256144 89256482 CACAGCCAAGTGATACCTG 58 NA Rattus norvegicus 81 Fxr1 ENSRNOG00000051480 ENSRNOT00000088442 1 1 1 80 2 120529768 120529792 GTACAAGGTTCTAGGTCTTATAGTG 58 120520591 120529733 AGAATTTGTACCATAACCGGAG 58 NA Rattus norvegicus 81 RGD1308544 ENSRNOG00000047406 ENSRNOT00000071842 1 1 1 80 1 37704122 37704145 CCAGAAATTACATCGAGATGACAG 60 37702471 37704084 ACAGTCCTTTCCTGTTCCTC 59 NA Rattus norvegicus 81 Hint2 ENSRNOG00000015866 ENSRNOT00000021387 3 1 1 80 5 59150912 59151036 ATATGAAGATCAGCAGTGCC 58 59150851 59150870 GGCTTTCTAGGAATGACCAG 58 NA Rattus norvegicus 81 Olr1766 ENSRNOG00000037506 ENSRNOT00000050717 1 1 1 60 X 136892191 136892209 AGGAACAAGGATGTGAAGG 57 136892149 136892167 TGACCAGGTATGTATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipt1 ENSRNOG00000018464 ENSRNOT00000024896 2 1 1 92 9 44466667 44466685 GACAAGTGCTCTAGGTCCC 60 44466741 44469368 GGAATTAGCATGCTGCCAC 60 NA InUTR Rattus norvegicus 81 Msi2 ENSRNOG00000025338 ENSRNOT00000003164 2 1 1 80 10 76039037 76039058 CCATGAGTTAGATTCCAAGACG 59 75915316 76034975 TTTGTTCTTGTGACCATCTTGG 60 NA Rattus norvegicus 81 AABR07052780.1 ENSRNOG00000046960 ENSRNOT00000070799 2 1 1 85 3 75020251 75020269 CAGTTGGCAAGTTCCTCTC 59 75020182 75020202 ACCAGATCAAGATGATCATCC 57 NA DesignNoJunction Rattus norvegicus 81 Olr141 ENSRNOG00000016946 ENSRNOT00000022733 1 1 1 60 1 169214217 169214238 CGCTATACAGCCATTCTAACTC 59 169214178 169214198 TTAGTGTAATACCCAGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000055683 3 1 2 81 10 76159832 76160371 ACATAGAAGGCTCTCAGCA 58 76159769 76159788 ATATTGGTGAGGTTCAGCTC 57 NA Rattus norvegicus 81 LOC100909792 ENSRNOG00000050466 ENSRNOT00000074681 2 1 1 60 2 168228102 168228122 AACATCATGCTTTCAGGTGAC 59 168228141 168228162 CAAGACTGAACTGCAATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcr10 ENSRNOG00000059061 ENSRNOT00000083839 3 1 1 119 14 84937646 84937664 CAGGACTTCTACCTTCGCC 60 84935715 84937564 TGCTTTGTTGTCAGTTTCCC 59 NA Rattus norvegicus 81 RGD1562433 ENSRNOG00000036807 ENSRNOT00000055216 1 1 1 60 1 169320083 169320102 ATACTACCACCATTCCAGCC 59 169320042 169320060 GTACTGACCTCTTGTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 1 2 3 80 2 210724756 210724775 GGACATTCTGGAGAATCAGC 59 210723669 210724714 TTCAGCTTCTCAAAGTCAGG 58 NA Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 3 1 1 60 1 167884395 167884414 TTTGACTATCGCTTCATCGG 58 167884354 167884375 AGGAGTGTAGGAAGAACATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo18b ENSRNOG00000048430 ENSRNOT00000070961 1 1 1 80 12 49840294 49840313 AGACAGAAACTGCAGAACTC 58 49840356 49847284 GTCTGCGATCTTACTCTCC 57 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000082233,ENSRNOT00000080174 2 3 5 83 20 4808254 4808273 TGAAACTGAAGGACAACGAG 58 4807034 4808209 TCACAAAGATCACAACCTGG 58 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938,ENSRNOT00000056562 2 2 2 160 8 98756838 98756856 TGAAAGTTCATGGTCGCTC 58 98756980 98759152 CAAGCAACATCATTCGCTC 58 NA InUTR Rattus norvegicus 81 Olr159 ENSRNOG00000046999 ENSRNOT00000075036 1 1 1 60 1 169645854 169645875 AATACACCATACCTACTGTGAC 57 169645896 169645914 CTTGACATTGCCACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1087 ENSRNOG00000007348 ENSRNOT00000009615 2 1 1 60 7 13997064 13997082 CATGTATCTGGTCACCGTC 58 13997103 13997124 ACAGTCTGATATGATGGCTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp4a ENSRNOG00000017660 ENSRNOT00000024330 3 1 1 80 9 43962830 43962851 TCTCATCAATCAGATGACCCAG 60 43962891 43963169 CCCAGCAAGTACATTGTTCC 59 NA Rattus norvegicus 81 RGD1560585 ENSRNOG00000060534 ENSRNOT00000078404 1 1 1 60 X 144001538 144001557 AAAGAAGTATGAAGCCCTGG 58 144001497 144001516 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam47a ENSRNOG00000003836 ENSRNOT00000005141 3 1 1 60 X 45966061 45966082 AAAGGAGTCTATGACTTCTGTG 58 45966103 45966121 GTTCGTCAATGCCCAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf13 ENSRNOG00000020315 ENSRNOT00000027530 3 1 1 81 2 211366181 211366201 ATGACCAGAATCCTTATACGG 57 211366242 211369180 GCCTTATGAGTCATTTCAGTG 57 NA Rattus norvegicus 81 Creg2 ENSRNOG00000013991 ENSRNOT00000046557 1 1 1 80 9 46398810 46398828 TGAAGAACCCTGTAGCCTC 59 46373642 46375942 CGTCATCAGGTTCATCCAG 58 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 1 2 2 60 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794546 117794564 AACCACGGTAGTAGTTGTG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1560394 ENSRNOG00000038150 ENSRNOT00000058062 3 1 1 138 14 82054627 82054645 ATTTGAATTCATGCAGCGC 58 82053721 82053739 CAATGATCTTCAGCGTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07055937.1 ENSRNOG00000061704 ENSRNOT00000073630 1 1 1 60 7 16068032 16068053 TATTAAACCATCTGCAAGGGAG 58 16067993 16068013 AGTATACAGCAAAGCTACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pts ENSRNOG00000009250 ENSRNOT00000012434 1 1 1 80 8 54955330 54957593 TCAAAGAATACATGGAGGAGG 57 54955270 54955288 CATCTGCAAAGTATGGCAC 57 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 3 2 2 81 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641410 52641428 CATAGCACAAGTTCTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 1 2 2 60 16 47181460 47206991 GCTGGATACTAAATACCCTTATGTG 59 47181424 47181443 ATTCTTGTTCATGATGGCGT 58 NA DesignNoJunction Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893,ENSRNOT00000081376 1 2 2 80 3 5843531 5845157 GACATTGAGAAGAACTACATGGG 59 5843473 5843493 CTCCAGGTTGATGAAGATGGT 60 NA Rattus norvegicus 81 Trim25 ENSRNOG00000002341 ENSRNOT00000055674 1 1 1 80 10 76353522 76355022 TTGAGTTTCTGGAGAAAGCTG 59 76355061 76355082 CATGGTCCAGGTCTATCTTAGG 60 NA Rattus norvegicus 81 Leap2 ENSRNOG00000007218 ENSRNOT00000049820 3 1 1 61 10 38774415 38774433 TCTTTGCAGTGCTTCTGAC 58 38771237 38771255 CAGATGAACGTGGACAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322,ENSRNOT00000019180 2 2 2 80 9 46748524 46751934 TGGAAGAGCAACAAAGGAG 58 46751978 46751996 TCTTCTCCTCCTGTTCTCG 58 NA Rattus norvegicus 81 Gstm4 ENSRNOG00000019221 ENSRNOT00000025994 2 1 1 80 2 210836537 210836557 TATATTCGAACCCAAGTGCCT 59 210834902 210836497 GAGATCTTCTTCAGTCCCTCG 60 NA Rattus norvegicus 81 Tnpo1 ENSRNOG00000014999 ENSRNOT00000020543 3 1 1 80 2 29082084 29084225 ATAGTCGAGTACATGCTTCAG 57 29082024 29082043 CAAAGTCAGCCAGAATTCAC 57 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 3 1 1 80 3 161469566 161474546 CAGACGAAAGATTATGCGGAG 59 161469506 161469526 TGTGTTGAGGAAGATCAGGTC 60 NA Rattus norvegicus 81 Hspa1l ENSRNOG00000047966 ENSRNOT00000074223 2 1 1 255 20 4959429 4962713 GTAGAGATTCCAGGCCTCG 59 4962932 4962950 CCAATTAGACGTTTGGCGT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Wdr47 ENSRNOG00000020330 ENSRNOT00000055862 2 1 1 80 2 211424211 211424231 CTGTTGTTAAGCCATCACCTG 60 211424270 211427278 GCTTCTTTGACTTGTCATCCTC 60 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 3 1 1 77 2 35484888 35484909 AGGGTTGATTTCTGCAAATCTG 60 35482774 35484851 AGAGCATGAGAGCTTAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Frat2 ENSRNOG00000045543 ENSRNOT00000072055 1 1 1 106 1 261089967 261089985 TTCTCGGAGAATCCAGCAG 59 261089879 261089897 TGATGAGGTTTCCGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oasl2 ENSRNOG00000028814 ENSRNOT00000001600 3 1 1 80 12 47480321 47482698 CTTAAAGTGGTAAAGGGAGGC 59 47480261 47480281 CAGGAACAGAATCATGTCCTG 59 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680,ENSRNOT00000088381 1 2 2 63 12 52454551 52454569 AAGTCAGTGGGCTTCTCAG 59 52458951 52458969 CTTGGCAACAAAGACACTG 58 NA DesignNoJunction Rattus norvegicus 81 Ss18l2 ENSRNOG00000047853 ENSRNOT00000073376 3 1 1 82 8 130350834 130350852 GAGAATGACCAGCTGATCC 58 130350897 130352779 AACACATGCTGATACTGGAC 58 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000064830 2 1 2 60 8 61917155 61917173 ACAATGGCATGACTGTGTC 59 61914796 61914814 TAAAGCTCTGGCCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Hgfac ENSRNOG00000009572 ENSRNOT00000013257 3 1 1 80 14 80971493 80971511 CAGGACCATGTGTCCTACC 60 80971290 80971452 TTCATCAAAGCACTTCTCTGTG 59 NA Rattus norvegicus 81 LOC689840 ENSRNOG00000031522 ENSRNOT00000043392 1 1 1 80 8 14815541 14815559 CCCAAAGCACTTCAGACAG 59 14815600 14816584 AGCCTTATGTAGAAGCTTAGGA 59 NA Rattus norvegicus 81 Nupr1l ENSRNOG00000000917 ENSRNOT00000001218 3 1 1 60 12 30303940 30303958 ACTGTCGGCTTAGAAGAGG 59 30303898 30303916 GGAAGTCACGCAGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt13 ENSRNOG00000015140 ENSRNOT00000064484 3 1 1 80 2 219619654 219619673 CTTCCTGTGCTAAGAGAAGG 58 219617292 219619612 TAATGCAAGATCTGTTGCCA 58 NA Rattus norvegicus 81 RGD1306941 ENSRNOG00000010185 ENSRNOT00000013511 3 1 1 96 9 64066827 64066845 CAATGAACTGCTCCTGCTG 59 64066903 64072573 CTCATGGTAATTCTGCACGTC 60 NA Rattus norvegicus 81 Prss45 ENSRNOG00000029649 ENSRNOT00000043249 2 1 1 80 8 119117726 119118002 CGTGCTATGGAGATCCTGG 60 119118046 119118064 TCTCCCACGAGAATATGCC 59 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 2 2 2 80 14 86146443 86146639 ATTCAAGGAAGCCTTCAGC 58 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 LOC687430 ENSRNOG00000000943 ENSRNOT00000001251 2 1 1 60 12 31258308 31258326 AGGGATTAACATGGTGCTG 58 31258349 31258368 TTCCTTGTAAGAAATGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wscd2 ENSRNOG00000053045 ENSRNOT00000080783 2 1 1 83 12 48817696 48828545 ACTGGAAAGGCAAAGAATGG 59 48817632 48817650 CAAACTTGAGCCAGTCCAG 59 NA Rattus norvegicus 81 RGD1305537 ENSRNOG00000005112 ENSRNOT00000061680 3 1 1 60 1 231365625 231365644 ACAGAAGAGACAAGATGTGG 57 231365584 231365602 CTGGAAGCATTCTGAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim3 ENSRNOG00000015525 ENSRNOT00000021052 3 1 1 85 3 161272642 161272660 CTTCATTGTCAGGGACTGC 59 161272708 161285319 CCTGCACATATAGGATGTCC 58 NA Rattus norvegicus 81 LOC684208 ENSRNOG00000048369 ENSRNOT00000074214 1 1 1 60 1 167857186 167857206 TTATGTATGCAGTAGCCACAC 58 167857226 167857246 CTCTCCACACGAATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000091105,ENSRNOT00000072848,ENSRNOT00000077561 2 6 8 60 20 4363497 4363515 GAGAGCCACTTATGCTGAG 58 4363538 4363557 CATTCTAGCTTCTGGGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtp3 ENSRNOG00000037167 ENSRNOT00000056100 3 1 1 84 8 119264347 119264365 CAGACAAGGAGCTTCTTCC 58 119262335 119264299 GAAGAACAGTGGAACCTGG 58 NA Rattus norvegicus 81 Mirlet7g ENSRNOG00000050242 ENSRNOT00000072553 2 1 1 60 8 114874466 114874489 GGTAGTAGTTTGTACAGTTTGAGG 59 114874505 114874526 TGTACAGTTATCTCCTGTACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpatch3 ENSRNOG00000007097 ENSRNOT00000009394 1 1 1 80 5 151797259 151799673 CACTGAGGCTTCAGATCTAGG 60 151799714 151799733 AAAGCTTCATTCTCTGCCCT 60 NA Rattus norvegicus 81 Gpatch3 ENSRNOG00000007097 ENSRNOT00000009394 2 1 1 80 5 151802341 151804365 TACTACGACAAAGATGGTGGA 59 151804407 151804425 CTGACCTTCACGGAGTCTC 60 NA Rattus norvegicus 81 LOC100359574 ENSRNOG00000025154 ENSRNOT00000030108 3 1 1 60 1 281864225 281864246 CTGTAACCATCAAAGAAGGCTC 59 281864265 281864285 ATAGACTGCTGAATGGATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 2 2 2 80 2 210700543 210700561 AAGCACCGTATGTTTGAGC 59 210698778 210700500 CTCAAGGGTCTCAAATCGAG 58 NA Rattus norvegicus 81 Lck ENSRNOG00000009705 ENSRNOT00000012936 1 1 1 81 5 147758902 147759061 GTGGATGGGATACTACAATGGA 60 147758842 147758860 CAGGAAGGCATCAGGAGAC 60 NA Rattus norvegicus 81 RGD1559804 ENSRNOG00000045563 ENSRNOT00000071517 2 1 1 88 16 12193800 12193948 CAGACAAGAGTGAGAATGATTCTG 60 12193735 12193754 TAGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756,ENSRNOT00000078085 1 2 2 80 16 72103395 72104470 ACCTACTTACTCCTGTATAAGGAC 59 72104509 72104527 TGTGAACTTTGGGTTGCAG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 1 1 8 60 20 4389044 4389478 TCATCTGCTACTCCCAGGA 59 4389002 4389020 CTTCTACAGTCCACAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Spsb4 ENSRNOG00000012862 ENSRNOT00000017363 2 1 1 97 8 104891723 104891741 CTATACCCGGTGGTGAGTG 59 104842284 104842302 CATAGGTCCATCAACGGCA 60 NA DesignNoJunction Rattus norvegicus 81 Zfp710 ENSRNOG00000014278 ENSRNOT00000064034 2 1 1 108 1 141861564 141861582 CTCAAGCACCAGAATGTGC 60 141861654 141865612 ACTCCTTCACACCCTTGTG 60 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 2 2 2 80 5 78155353 78155374 CACAACACTGAAATTCGAATGG 59 78154293 78155315 CTGTAACTCTTCGACCTTAGTC 58 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 2 2 2 80 5 78315657 78316109 ACTTATCTGTACAGCAGGCC 60 78315596 78315614 GTGAGCAGGGATGTACTCC 60 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838,ENSRNOT00000048764 2 2 2 80 8 118160633 118160730 CACATTCGAGATGACGGAC 58 118160571 118160589 AGTTCGTGAATCACCTTCC 58 NA Rattus norvegicus 81 Snx33 ENSRNOG00000017382 ENSRNOT00000023428 3 1 1 93 8 61592718 61592738 CATGACCTCTTCCAAATGCTC 59 61586217 61592663 CAAAGGCACCTTTCTGCAG 60 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849,ENSRNOT00000079414 3 2 2 136 3 164055530 164055548 TACCTCTTCATGGTGCAGG 59 164050455 164055435 AGAGGATAATCTGAGTCATTCAGG 60 NA Rattus norvegicus 81 Fgf10 ENSRNOG00000012278 ENSRNOT00000016485 1 1 1 85 2 51673750 51673770 TCCTTCACCAAGTACTTTCTC 57 51673815 51740168 TCTAGGATACTGTACGGACAG 58 NA Rattus norvegicus 81 Umodl ENSRNOG00000037191 ENSRNOT00000056143 2 1 1 80 5 152423033 152423088 CTTCTTTACCAACCACAACC 57 152422972 152422990 CTGTAGTGTCCCTTTCCTG 57 NA Rattus norvegicus 81 Dclk3 ENSRNOG00000033026 ENSRNOT00000044742 2 1 1 81 8 119739938 119739957 AGCTCTTCAACATCATCCAG 58 119740001 119743478 AGATCTTTGGCAGCATCAG 58 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 3 2 2 80 8 94239144 94239162 CAGCAGCGAGAAACTTTCC 60 94236359 94239102 GTCAAGAGGCCATAATCATGG 59 NA Rattus norvegicus 81 Cnn3 ENSRNOG00000011559 ENSRNOT00000015579 1 1 1 80 2 225005341 225028165 CGAGGTCAAGAACAAGATCG 59 225028207 225028226 CCTGTCACCTCTTCTATCCA 58 NA Rattus norvegicus 81 Trim71 ENSRNOG00000030098 ENSRNOT00000047198 2 1 1 112 8 122556268 122566995 CCATTCAGCTGAGCATTGAG 59 122556175 122556194 CAGAGCTTTCTTGTGTCTCG 59 NA Rattus norvegicus 81 LOC683897 ENSRNOG00000047118 ENSRNOT00000072716 3 1 1 80 20 48276487 48276506 ACCGTCTACGAAGAGAAGAC 59 48276199 48276447 CAGAATCCGTCTCTTTAAGCTC 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230,ENSRNOT00000064905 1 2 2 80 20 47684076 47684094 TCCGGTTTGTGAAAGATGC 59 47684136 47686128 CATTGCCATCAATCTCATGCT 60 NA Rattus norvegicus 81 Wwc2 ENSRNOG00000013248 ENSRNOT00000017966 3 1 1 80 16 47462928 47462947 GCCCTTGATGAATATGTGCG 60 47462989 47464127 TGAAGATCCTGAGAAGAGGC 59 NA Rattus norvegicus 81 RGD1562618 ENSRNOG00000026238 ENSRNOT00000033397 2 1 1 89 8 63287492 63287510 GCATGAAGATGGTCATCGG 59 63287563 63296311 CGATCTGACTCACCACCTC 60 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 2 2 2 80 5 79398799 79400910 GAGTGTGATACAGCTCTGGT 59 79400950 79400971 TTCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330,ENSRNOT00000026418 3 2 2 102 16 74328466 74330900 AATAGCGGGCAGGTTAGAG 59 74328382 74328402 AGGAAGCTCCTTAAAGACAGG 60 NA Rattus norvegicus 81 Pdss2 ENSRNOG00000042962 ENSRNOT00000067169 2 1 1 80 20 48161159 48191951 GAACTACACTAAGTTGCGGG 59 48191993 48192012 TTTCCATGGTAACGACACAG 58 NA Rattus norvegicus 81 LOC100360884 ENSRNOG00000000376 ENSRNOT00000000423 2 1 1 60 20 26534600 26534622 CTACTTCAAGAAAGTACCTCGTC 59 26534641 26534660 CCAAACTCCCTTCTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1705 ENSRNOG00000048714 ENSRNOT00000071933 3 1 1 60 20 1021780 1021800 CTGAAGCACCTTTCCATTCTG 60 1021819 1021840 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566373 ENSRNOG00000032408 ENSRNOT00000047773 1 1 1 60 20 23466983 23467004 AGAAAGAAGATTGTGCTGAGAC 59 23466944 23466962 GCATCCTCTTAGATCCGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566373 ENSRNOG00000032408 ENSRNOT00000047773 3 1 1 60 20 23466931 23466949 GGATGCTGGCCATTAAGAG 58 23466889 23466909 CCCTTTCTCTTCTTGTCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 1 2 2 81 16 74548731 74550599 GATGAACTGGGTCCTATCCC 59 74550643 74550661 AATCCACCGGATACACAGC 60 NA Rattus norvegicus 81 Sdhb ENSRNOG00000007967 ENSRNOT00000010593 1 1 1 80 5 159499502 159499520 GAAGGATGAGTCCCAGGAG 59 159499563 159501994 CACTCATACAATCCGTCCAG 58 NA Rattus norvegicus 81 AABR07045621.1 ENSRNOG00000049150 ENSRNOT00000073994 2 1 1 60 20 53776429 53776447 CTGTAGGCTTTATGCCACG 59 53776387 53776405 TTCAAGGAAGCTGGTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353,ENSRNOT00000086242 3 2 2 80 3 80390701 80391789 TGGACAGATGCAGGTACAG 59 80391833 80391851 AAGGTTCTCCCAGATGAGC 59 NA Rattus norvegicus 81 B3galt4 ENSRNOG00000000471 ENSRNOT00000000550 3 1 1 60 20 5446818 5446839 CATCCTCAAGACAGATGATGAC 59 5446858 5446878 TATCAGTTCTGACACCAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044281.1 ENSRNOG00000045959 ENSRNOT00000074812 3 1 1 97 20 969453 969473 TGATACATCCCAAGAGGCT 58 969374 969395 CAACGAGAATTCTGACATAGGA 58 NA Rattus norvegicus 81 Tyrp1 ENSRNOG00000029318 ENSRNOT00000046503 3 1 1 84 5 98397653 98399294 CAGTGGAAGGTTACAGCGA 60 98399342 98399360 CCATTCAGGAAGAGGTGGG 60 NA Rattus norvegicus 81 Qrsl1 ENSRNOG00000026049 ENSRNOT00000018892 1 1 1 80 20 48860400 48860912 TACAGTACGGTCACAGGTC 59 48860338 48860357 CATTGAACCCTTCCTGTCTG 59 NA Rattus norvegicus 81 Olr1675 ENSRNOG00000047267 ENSRNOT00000048277 1 1 1 60 20 34483 34504 TAGTAACTCCTACACTGAACCC 59 34444 34465 GCCCTCTTTACATCCTTATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1684 ENSRNOG00000040183 ENSRNOT00000061839 3 1 1 60 20 573062 573083 TGTTATCCTGCTAGTGTTACCT 59 573102 573122 TTTCACGATAGCACCATAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhd ENSRNOG00000017130 ENSRNOT00000023187 2 1 1 80 5 153218713 153221464 AGATCAACATGGTTCACATCC 58 153221504 153221524 GAGAAGAAATCAGGCAACTCG 59 NA Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 1 1 1 80 3 91100382 91122611 CAGATGAACAAGGATTGGATGG 60 91100323 91100341 AGCAGGAACATAAGCAGGA 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 3 2 2 80 16 69070875 69074895 TCATGAAGAAATACCAGCCCT 59 69074937 69074955 TGAGGACCAACTGGATCAG 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000018653 1 1 2 117 16 75597443 75599433 CCTTTCTGTCTTTACTCAAAGC 58 75597347 75597365 TTTACCCAGTCCACAAGTG 57 NA Rattus norvegicus 81 Adnp ENSRNOG00000010975 ENSRNOT00000014595 2 1 1 104 3 164946964 164964581 CCAGCCAAGAAACTATGTTCC 59 164946880 164946900 AGTATTCCAACCCAATGTCAC 58 NA InUTR Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 2 3 3 80 5 59630464 59630482 CCGTCTGTTACATCCAGCT 60 59624446 59630420 GTTCCTTGATGGAGCTGGT 60 NA Rattus norvegicus 81 Cyp4v3 ENSRNOG00000042426 ENSRNOT00000019302 3 1 1 80 16 50126712 50132475 TTCATGTTTGAGGGTCACG 58 50132518 50132537 CTGGACTTCTGGATTAGAGC 58 NA Rattus norvegicus 81 Fam46b ENSRNOG00000056153 ENSRNOT00000086144 3 1 1 119 5 151692474 151698094 CAGATTGTACAGGTAGTTCGC 59 151698175 151698193 CTTGTAGCCTAGGCCACTC 60 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 1 1 2 95 3 156775222 156775240 GAACAGTGAAGCATGGGAG 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Defb1 ENSRNOG00000013768 ENSRNOT00000018427 2 1 1 61 16 75309003 75309021 TCTTCTCCCAGATGGAGCT 60 75294614 75294632 TTGATCTGTTCTGCGTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Kcnu1 ENSRNOG00000014741 ENSRNOT00000019935 2 1 1 80 16 70939571 70939590 GATTCGGACATGCTAGACAG 58 70934947 70939528 AGATCGTTTCAGAACCACC 58 NA Rattus norvegicus 81 RGD1563348 ENSRNOG00000054563 ENSRNOT00000082857 1 1 1 80 3 72071322 72071459 ACAACAGTCGTGTTGAACTC 59 72071261 72071279 CCATCTCTTGAGGCTCAGG 60 NA Rattus norvegicus 81 Bpifb4 ENSRNOG00000034174 ENSRNOT00000044574 1 1 1 80 3 149434178 149435297 ATGGCATGTTTGAAGATCTCC 59 149437594 149437612 CAGGGTATTGCTGGAACAC 59 NA Rattus norvegicus 81 Upf3a ENSRNOG00000017397 ENSRNOT00000066521 2 1 1 80 16 81524624 81524643 CTCCATTCCAGAAGATTGCC 59 81524685 81524820 TATACTCTGGGTCGTCTTCG 59 NA Rattus norvegicus 81 Pramef17 ENSRNOG00000042820 ENSRNOT00000048366 2 1 1 80 5 162440780 162441560 GAGTTACTCAGGTGTCTGGT 59 162440719 162440740 TGACTCCAAATCTGACTGAGAG 60 NA Rattus norvegicus 81 Adam18 ENSRNOG00000017683 ENSRNOT00000023805 3 1 1 80 16 72166767 72166787 ATGGGATCTGACATTATGGCT 59 72166826 72167042 GTTCAGCTGAGTGAACATAGTG 59 NA Rattus norvegicus 81 Nelfcd ENSRNOG00000047874 ENSRNOT00000073634 1 1 1 80 3 172510899 172510920 TTATGGGAGAAGACTACTTCGG 59 172510958 172514664 CAGAATCTTCTTCCTGATGCTG 59 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 2 2 2 81 5 150514397 150514416 TCTACAGGATGTTGTGCAGG 60 150514195 150514353 GCCAAAGGAGTAGACCTGG 60 NA Rattus norvegicus 81 Atp9a ENSRNOG00000049484 ENSRNOT00000071672 2 1 1 86 3 165421979 165424512 GCATCAAGGTTTGGATGCT 59 165421911 165421929 CTTGGTTTCTGGTCACCAG 58 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000010298 2 1 3 117 3 153450221 153451892 GGAGAGCATCTTGGTCCAG 60 153450122 153450141 GTGTAGCAAAGTGTACAGCG 60 NA Rattus norvegicus 81 Defb29 ENSRNOG00000023195 ENSRNOT00000031683 3 1 1 108 3 148009122 148010117 TTGACAAGACCACAGGTGG 60 148009032 148009052 TATTTCTGGCAGGCATTTCTG 59 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 1 1 1 61 3 176441403 176441421 TTGTGGAAAGAATCCAGGC 58 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Gata5 ENSRNOG00000058983 ENSRNOT00000089971 3 1 1 118 3 175707266 175708634 GACCACCTTCGTACCTGAC 60 175707166 175707185 TGCATAGATAGTGTCCGGTG 59 NA Rattus norvegicus 81 Psma7 ENSRNOG00000056853 ENSRNOT00000082686 2 1 1 83 3 175421140 175421160 AGAACTACACAGATGATGCCA 59 175420667 175421095 CTGACTGGACCACTTCCAG 60 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974,ENSRNOT00000088458 3 2 2 80 16 71163395 71166296 ATTACAGAAAGGTGCCAGC 58 71163333 71163351 GTTTCCACATCAGTCGAGG 58 NA Rattus norvegicus 81 LOC100912321 ENSRNOG00000032890 ENSRNOT00000043510 2 1 1 60 16 34795993 34796011 TGACTCACACCACCTTCAC 60 34796033 34796053 GCCACGATAATCAAAGAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 3 2 2 80 3 176915014 176925763 CCGAGACTCAAATGTGGAC 58 176914952 176914970 TGAGCATAGAGCTCTGCTC 59 NA Rattus norvegicus 81 Defb37 ENSRNOG00000038115 ENSRNOT00000058002 3 1 1 81 16 75083218 75094836 TTCCAGATCAACCCATTTGC 59 75094880 75094898 TTGGGCACTGGAGTATGTG 60 NA Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 1 1 1 79 16 75027271 75028935 ATTCAACTTCACCCAGCCA 60 75027210 75027228 CAGGCAGTTTCACATCGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 1 1 1 89 3 59837458 59839838 TTGTAACTGATTGCCAGCG 59 59839891 59839909 CCTCTGCTTCTTCCAAGTC 58 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 1 2 2 80 3 60029831 60032569 AGAAAGTCCAAGGAGTTCGT 59 60032612 60032630 TCCTCATGTCTGGATGCTC 59 NA Rattus norvegicus 81 Lamp1 ENSRNOG00000019629 ENSRNOT00000026580 1 1 1 82 16 81691005 81691108 TTCCTGATGCCATAGAGCC 59 81690941 81690960 CTTGTATGAGTTGCCGACAC 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435,ENSRNOT00000084866 3 2 2 80 3 155304312 155304332 ACAACCGTCATTTACAATCCC 59 155304373 155308530 GTTCCTAAGCTTGAACACGG 59 NA Rattus norvegicus 81 Chn1 ENSRNOG00000017939 ENSRNOT00000068745 3 1 1 80 3 60535994 60536013 CACTGGTGTGAATACTGTGC 59 60526498 60535953 AACATTCAACCCACAATCTGC 60 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963,ENSRNOT00000067508 1 2 2 80 16 81336575 81336595 TCATCTTCCTGAGGTTCTTCG 60 81335060 81336533 TCTGTGGATCCGTATGGTG 59 NA Rattus norvegicus 81 AC135696.1 ENSRNOG00000058908 ENSRNOT00000081634 1 1 1 60 16 37500170 37500191 GATGCTTCTGTCAACTTCTCAG 59 37500212 37500230 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir147 ENSRNOG00000036445 ENSRNOT00000054556 2 1 1 61 3 114775352 114775370 AGTGGAAACACTTCTGCAC 58 114775395 114775413 TGTAGCAGAAGCATTTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 3 2 2 81 16 82999376 82999394 TGTCAGCTGCTACCATGAG 60 82993849 82999331 ATGTCACAAACTGCGAACG 60 NA Rattus norvegicus 81 Ahcy ENSRNOG00000017777 ENSRNOT00000024310 1 1 1 80 3 150590242 150590260 GTGATGGCACAGATTGAGC 59 150588660 150590199 CTCATCCAGCTTCTTAGGCA 60 NA Rattus norvegicus 81 Cdca7 ENSRNOG00000001514 ENSRNOT00000002066 3 1 1 80 3 59159764 59159782 ATGTCAGAACTGGAGAGCT 58 59159823 59160645 GGACTTTGAATCTTTGGTTCTG 58 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000082726 1 1 2 80 19 36270945 36326970 AGGCTATAAGTACATAGCACCC 59 36270886 36270907 AGATGAGGGAGTCTTACAACAC 60 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 3 2 2 82 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856016 150856034 AGCAGGATGAGCAAATCGA 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 3 2 3 83 15 34862328 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032715 TTCTCAGTGACGATGTCCAG 60 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 2 2 2 83 2 52505527 52507205 GAATGCCAGGTCTGTAACAG 59 52505463 52505483 GTTGGGTTTATCTCCAGTGTG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 3 1 2 121 2 143928168 143929007 CCAGGGAAGACTACGATGG 59 143926779 143926798 ATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464 3 2 3 111 16 2142304 2158118 TTTACAAGAGAAGCTGATGGTC 59 2138551 2138575 CAGAGTATCTGATAAGTCAGATTCC 59 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 3 2 2 82 2 30181800 30181823 GCCTAAGATAACTGTCATAATCGG 59 30181375 30181764 GAAATCTTGGACTATATGCTCTGC 60 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 1 3 3 146 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775 2 1 6 106 1 76475250 76475268 CATGGTTTGAGCACATCCG 60 76260552 76475186 CTTCTTTATGGATCCCATTGTATCC 60 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086474 2 1 3 115 14 86158921 86158939 CTGGTCAAAGTGGGAGAGG 60 86157807 86158844 TTCTTGTGCTTCATCATCTCG 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000067331 1 1 2 80 5 28092436 28092454 GCTTATCGGAGTTTGAGCT 58 28050119 28092394 ACGCATAGATCTGAATCACTC 58 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627 1 1 2 80 X 35721927 35771516 GATCTACAGACCCAGATTCCC 60 35771558 35771576 CTCGACGTTTATGCAACCA 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456 1 1 2 80 X 31124185 31124349 GTAAATGTCAGCAGCTATGCC 60 31124125 31124147 CAGTGTCTTTACAATGAGGTCTG 60 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000068553 1 2 6 87 17 84171263 84171281 AACCTATAAGGCCACTCCG 59 84169769 84171212 TTTGTGTTTGACCGCACTC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000068553 3 1 6 80 17 84174982 84175002 GCCATTTCTGATCCTCTTGAG 59 84171281 84174941 TGGCTCTTTATACTGGAACCT 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000074298 2 1 2 82 1 212021557 212021811 GCACTCAAGATGAAAGAGCC 59 212021494 212021512 AGGAACTGAGTGACTGGTG 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027 1 1 2 82 1 211990152 211990170 AATGTACGCCCTACCTTGG 60 211989947 211990107 AATTCACAAACCTCCACAGC 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559 1 2 3 98 17 10617655 10618280 AAATCCAACAGCTGCATCC 59 10611065 10611083 GTCCAGGTAAAGTTTGCCC 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 2 2 2 80 4 64681869 64681888 ACATCCTCTTGGTCTTCCTG 59 64660470 64681827 TTCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 1 2 2 88 1 222319577 222319595 GGACAAGCAGCTGAATGAG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 2 3 7 80 11 46244235 46248741 CATTACATCTGTGCCTTTAGAG 57 46244176 46244196 TGTAGTTCCTCTTCACTAGGT 58 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000005332 1 1 2 104 13 94209152 94355043 TAAGCTGGAACACTCCCAG 59 94209066 94209084 TCTCCCATGATGTCCACAG 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 3 2 2 80 17 38461285 38462011 GTCATTGCTCAAATTGGTTCG 59 38462052 38462071 AGATGCAATGATGGAAGTCC 58 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000085675,ENSRNOT00000014030 1 2 3 80 4 156426702 156427116 ACTGAAGATGAGTTGGTGG 57 156426640 156426658 CATCTTGAAGGTCTGAGGG 57 NA Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 1 2 2 80 17 39160774 39161328 GCCAAGAAGGTTAAACATGGA 59 39161368 39161388 ATTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 3 2 2 123 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079889 111079908 CAGAAAGACATCGGTATCCG 58 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355 1 1 2 91 16 19001397 19047177 CAACATCCGGAACATGGTG 59 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 2 2 2 80 X 39885420 39885439 GCAAATGGATGCATTGAGAC 58 39885480 39907538 GAGGACTGCTGAAATGTATGG 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076380 1 1 5 133 7 115821783 115821801 TAGATCGACAAGAGGAGGG 58 115823287 115825575 TTTGTTCAGCACTGTCAGG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 2 2 2 80 10 18084112 18084786 AAGGTCAAAGGGTCAAGAG 57 18084050 18084070 ATGTCTTCTACAGAGCTAGGT 58 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 3 2 2 95 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960734 18962014 TCAGGAACACCTTACACGA 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000019059 2 1 2 95 1 141875222 141875241 CAGACTCTGGAGAAGGTGTG 60 141874716 141875164 CAGCTTCACATTGCTGAGG 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000078913 3 1 3 90 2 188174019 188174037 AGGACTTTCGAACTGACCG 60 188174892 188180295 ACTACAGATTGCACCGTCTC 60 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000067129 2 1 2 118 5 24589420 24589440 CTGCTAATCTTAGCAGTGTCC 59 24578516 24589343 TTTCAAACACTGGTAACCTTGG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 2 2 10 81 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250834 231250857 GCTAAGACAGGAACTTCATTAACC 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 3 2 10 82 2 231250896 231255696 ACAACAGCAACAAGATGATGAG 60 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000040877 3 1 2 80 18 33413762 33413815 AAGTAGGACCTTGGGAATCG 59 33413701 33413720 CGATGCTGTAACTTGTCTGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 2 2 3 80 5 48281272 48282414 CTTCATGGAGCATAAGGACAG 59 48282455 48282474 CTAGAGAACCTATGGCTCCC 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 3 4 7 83 1 215610468 215610577 ACCTGAAGAGTGTGATGCTC 60 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 1 3 3 80 12 8101781 8101799 TCTCACCCAAGAACATGGA 58 8101842 8102178 TGATAAGAACGGCTAGGAGG 59 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 3 2 2 89 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472116 100472135 CATGACGGAGGATTTGTACC 59 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 1 1 1 132 1 198690904 198690922 GAAACTCAAGAGCCCTGTG 59 198700240 198700258 ATGTTTGGCTAGTGTGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 1 2 2 86 1 247871969 247876370 TATCACTGCTGAAGAGGCC 59 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326 3 1 2 91 1 177183922 177183940 GACTTCAGTAAGGATCGGC 58 177183995 177187239 CTGTATCAGAGCTGCTGTC 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000011340 3 1 4 88 10 39212384 39212403 TTCGAGATGTTTACAGTGCT 57 39211433 39212334 AGAATTTCTGTTCCCAGGAC 58 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 3 2 2 80 18 37007715 37007734 TGACCAGAGACTATCTGACC 58 36988931 37007673 AGTCATGAACCTGGTATGTC 57 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000068322 3 1 2 97 1 83966783 83966802 ACTTTGCACTTGAGCACTG 59 83966864 83966882 GCTTGAAATTCGTCCAGCA 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000036654 1 1 6 80 4 157538802 157538820 TCAGGCATCTGTTACCCAG 59 157538864 157539361 ATTACCAAACCAGGACCCG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 2 1 1 79 6 24080568 24080586 CTCTACTCGGTTCACAGGC 60 24082907 24082927 CTTGAACTTCACTGTACTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000007726 2 1 2 91 19 25158095 25158113 CTCAAGATGGTGACAGCCT 59 25153748 25158041 CTTGGTTTGACTGCTCACTG 60 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630 1 1 2 80 19 25155960 25156060 TCATAAAGGAATTAGCACCGC 59 25155900 25155918 ATGCTACAACAGGTGTCCC 60 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 3 2 2 80 1 86979515 86980096 TAAGCACTCAGATCCTCGTC 59 86980139 86980157 TAGAGCTGGTTCACCACAG 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 3 2 3 80 10 35361980 35363419 AGGAGAATGTTGATATCTGGTC 58 35363457 35363478 GGTCAGTACCTTGGAATATCAC 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000078688 2 1 2 84 3 151359871 151359889 GGAGAGTGTCTTCAAGCTG 58 151359482 151359825 GGTCAGTGATCTGTCAATGAG 59 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 2 2 2 80 1 73656628 73659483 CATGTGTCAGAAGCAGCTC 59 73656438 73656456 GTAATCCTGGTGCTGTGAG 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000019862 3 1 2 158 17 15358008 15358027 GTTTAACAGGAACTGTGGGC 60 15356585 15357893 CTGTAATTTCTTGTGTCTGAGTCTC 60 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000028585 3 1 2 81 1 89391732 89391750 TTACTGCTCTGTGGTCTCG 59 89388043 89391688 AAAGAGCCAATCAAGGACGA 60 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000079598 1 1 2 80 11 47200233 47218315 GAGGAATCTCGCATACTTGG 58 47218357 47218376 GCCTGCGAGGAAATATACTG 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 2 2 2 96 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312684 36312702 TCTGTTCTTTAGCAGCCCA 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 3 2 2 97 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312683 36312702 ATCTGTTCTTTAGCAGCCCA 60 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000012993 3 1 4 112 15 51916287 51916305 TTTCACATGGTCTTTGCCT 58 51904476 51915291 TGTAGTGATCTTCCTCTTCGA 58 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000005109 1 1 2 80 10 11050638 11050657 TTGTGACCAATTACTGGGAG 58 11051789 11052254 CTAGAAGCTTGCCTTGGTC 58 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000006249 1 1 2 80 7 28711651 28711669 GCTATGTGGTCCAGACTCC 60 28701779 28711608 GTGAATTCTCCGTGATGCTG 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800 2 1 2 87 4 7358506 7373819 TCTACCGGAAAGATGGGAG 58 7373868 7373888 AGGATAAACATGATGACAGCC 58 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 3 2 2 86 3 123690557 123693736 CTAGTCAAGGTAGGCTTCCT 58 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 3 2 2 94 1 31871822 31880989 CAAGATCAAAGGGAAGTCCT 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 2 2 2 80 14 86379280 86379591 CTTCTCTAGAAAGGCTAAGAAGG 58 86379222 86379240 GTGGGTTTAGGCTTCTTCC 58 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 2 2 2 80 12 12724605 12724624 GAATGTTCGACAGTGATGCA 59 12722460 12724568 GTAGCTTTACTAAGTTACCTTCGAC 59 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000087416 2 1 3 80 5 142702812 142702833 GCTATCATGAGGAGAAAGAACG 59 142702873 142703515 CCTCCATGTATCTCGTGGAC 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000087416 3 1 3 80 5 142702814 142702834 TATCATGAGGAGAAAGAACGG 57 142702876 142703517 GACCTCCATGTATCTCGTG 57 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 3 1 6 80 1 282643688 282643707 ATCTATACACCAGCCCATGC 60 282672492 282681788 TCCTATAACCAGTGCACCAC 60 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072 1 1 2 80 1 192034365 192036720 GACTACCACATGATGGCGT 60 192036761 192036782 CACATATTGAGTTGGAACCCAG 59 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 2 2 2 101 6 27155933 27189842 TCACCACAATCGGCTATGG 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 1 2 2 80 3 129077724 129077742 CATCCTCAAGGACACTCGT 59 129062166 129077683 ATAATCCACCTTTGGAATGCAC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162 2 2 3 80 10 38891202 38891221 CGTTCATCTCAAACTGACCA 58 38891263 38891604 ACTATGGGCCTGTAACTGTC 59 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 2 2 2 94 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025915 99025933 CATCCTGCCGAATCTTCTC 58 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 3 2 2 106 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025927 99025945 TCACAGAATCTGCATCCTG 57 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 2 3 3 83 17 23175161 23177433 GAGCATCATCAGCTGAGTC 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 3 1 2 149 10 15242550 15242569 GCCATCAATGGGAAGATCTC 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 3 3 3 85 12 7464298 7464316 CTGTGTCTTGTCGAGACGA 60 7464365 7478923 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 85 12 7504850 7504868 CTGTGTCTTGTCGAGACGA 60 7504917 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 3 2 5 87 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729171 19730712 TTTGGTTATGCAAATCGCTC 58 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 3 2 2 80 11 57247457 57254071 CTAGTTCACAGGAATCTCCCT 59 57254112 57254131 TGTGATGATGTTGACACCCA 60 NA Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 1 1 1 60 8 19972850 19972868 GACCCTGAACTACAACCCA 59 19972889 19972910 GTACAGTGAGCAGGTATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 2 1 1 60 8 19973118 19973141 GTATGGATAGTCTACTACTGGCTG 60 19973159 19973178 GGATGACAAATTGCTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 3 1 1 81 6 96884105 96884126 ACTAAGAGAAAGAGAACCAGAG 57 96884168 96891219 TTGGAACATCACCTTTGCT 58 NA Rattus norvegicus 81 Eif3e ENSRNOG00000027690 ENSRNOT00000038340 2 1 1 80 13 100145537 100149433 CAACCACAGTACCTTAATGCA 59 100149474 100149493 TTTGTTGGTTATGACGGCAG 59 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519 1 1 2 89 9 61974724 61974742 AGGATGTTGTCAATTGCCC 58 61972834 61974671 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 1 1 1 76 1 94760651 94760669 CCAGACACCAGTCTTCTGG 60 94759391 94759409 AACAGACAGAGTGTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058834 2 1 3 120 X 36969076 36974123 TGTTGTCACCATCTGATGCT 60 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 3 1 1 64 1 238834530 238834551 ACTATGATACTGGAGACATGGT 58 238834257 238834275 AATGCTGCAGTTCTTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 2 2 2 80 18 47842790 47850110 GCCATCAAGAATGGTCAGC 59 47850153 47850172 CTTGGAACAACTCAGTTCCG 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000064284 2 1 2 80 10 103679338 103679357 TGTGGAATTACAAAGGCTGG 59 103673812 103679297 ACCACTGTCATACCTCTTACC 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000028363 1 1 2 87 1 221260956 221260974 AGTAAGGGTGTGAGCAGTG 59 221259407 221260905 TTCCACAAATGTCACAGGC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000089763 2 1 2 80 8 48721812 48722116 TACAGAGCACGAGATCTGG 59 48722160 48722178 ACTCCAAACAAGGCAATGG 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 3 2 3 111 3 72433271 72433289 GTGTCGGATTATGTGACCC 58 72432623 72432840 ACTTCTCTTCATTCTCTGGAC 57 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 3 2 2 80 2 178609366 178612314 CTGGTGATGGGATGTTCCT 59 178609304 178609325 AGTGTAGAATCAAGTTGACCAC 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 1 2 4 80 15 34752193 34752211 CATGTGACCTTCTGTGGTG 59 34752254 34752847 AGTGATTTCCCTTCCATGAC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 2 2 2 102 5 156289544 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291428 TGTAGTTCAGATAGCCAGTCAG 59 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 3 2 2 103 5 156289544 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291429 ATGTAGTTCAGATAGCCAGTCAG 60 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577 1 1 2 80 13 47305414 47305586 ATGTGTAATTGCCACATGTGAG 60 47305355 47305376 TATGTGTACAGGTCTTCCTCTC 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 3 2 4 80 1 82338649 82338670 TATCAGTGTGAGATCTCCAACC 59 82332690 82338611 TTGTGTTGGATCAGGTATTACG 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 3 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259352 52259371 ACCCTGAATCCAAGTAGCAG 60 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249,ENSRNOT00000087919 3 3 4 86 X 54259441 54262386 CTATGGCCTAATGAAAGCTGG 59 54258975 54258993 ATTTGTCCCACCAAAGCAG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 1 2 4 82 X 54235604 54235622 AATCCGTTACTCCACCTGG 59 54229835 54235559 ATGGGATACCACTTTCAGGA 58 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 2 2 2 72 2 61692290 61692310 GAAGGAGAACAACCAAATCTG 57 61691854 61691872 AGATCCTGAGAGGGATGAC 58 NA DesignNoJunction Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 3 2 2 85 9 5324425 5329140 TTTACCATGACAGCCACCT 59 5324358 5324376 CAAGCTAGACCACAACCTG 58 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056693 3 2 5 81 12 52397970 52398133 CTTTACTTCGTGTGGTACGTC 59 52398176 52398194 TGGTGATGATGGAGCTCTC 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 3 4 5 84 13 47422067 47422658 AAGCCAACTCACAACTTCC 58 47422001 47422019 TTGTGTTCGAACTGGACAG 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859 1 4 5 80 13 47426323 47429297 ACTATGATAAGGACCTCTCGT 58 47426263 47426282 GGATGTAGTCCTGAACTCTG 57 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000034256 1 1 2 95 3 142781960 142781978 ATTTGGGCACATACCTCCC 60 142781881 142781899 ACAGAAGTAGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583 2 1 2 103 20 14649403 14651260 CTCATTGCCATCAGCATCC 59 14651326 14651345 TTAACCTCTTCGTCGGTGTC 60 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076 1 1 2 80 10 88952724 88952745 GCTGAAATTATTCAGCATGACC 59 88953718 88959739 AAAGTCAAACACTTCGTCCT 58 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 1 2 2 80 3 176093764 176093783 ATGATACGACCGATGAGGAC 59 176093826 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 2 2 2 80 3 175930606 175930625 GATGATACGACCGATGAGGA 59 175930668 176095187 CATCCTGGACTGGAACAGG 60 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 2 2 5 81 1 20916153 20916171 TACTACAGTCCAGGATGGC 58 20903361 20916109 ATGTGAACTCTTTCCCTCAG 57 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000038203 2 1 2 94 12 13904536 13904555 TCCTCCTCATCTTCCTCCTC 60 13904612 13905379 GAAGAGTCCTCGTCTGTGG 60 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863 3 1 2 80 6 41838896 41838914 GACGAGGACATGTTTCCCA 60 41835598 41838853 ATCATTAGGAAGAGCTCTGCT 59 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 2 2 2 80 X 62840330 62840348 CCTGAAGCTGATGACTGGA 59 62836931 62840289 CTTGATCTTGTCCTGTTTAGCC 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 2 2 2 80 5 100927222 100935913 GTGAAGAAATATCGCGGCC 60 100927160 100927178 ACCACAGGATCTTCCAACG 60 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 1 1 2 80 1 84891894 84891914 TACTAGAGCAGGAGAAAGAGC 59 84882120 84891854 CATAACCTGTCTCCAACTCTG 58 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 3 2 2 88 1 214414240 214414506 ATGTATGCCAGCATGTCTG 58 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 2 2 2 81 1 38585743 38585761 CTGGTCACATTTCTGGAGC 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 3 2 2 81 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583896 38585700 GGTTTCAATCCTAGATGGATGG 59 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578 3 1 2 80 6 72418166 72418184 AGTGACTGCAGAAGATGGT 59 72412696 72418123 GAGAGGTCATCCTTATCCCA 58 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 1 2 2 80 6 27487274 27487294 GCCATGGGATGACATTAGC 59 27485776 27485794 TCATACCAGGCCTCAACTC 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 1 3 3 80 9 10657659 10658708 ATCTACCAGGTAGAGTTTGAGG 59 10657600 10657619 GGGCAATTCCTCTTCAAGTG 59 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 1 2 2 80 13 45316571 45318789 GCATTGCCATGGAAATATACAC 59 45316512 45316530 AGGGTTCCTTGTTGGAGTC 59 NA InUTR Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964 3 1 2 80 4 10466141 10466159 AAAGACCTTCACCGTAGCT 59 10460325 10466098 ACAAAGTAGCCAAGGTTGAG 58 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 3 2 3 80 13 50485664 50488199 GTTTGCAGGTGTGAATGAG 57 50485602 50485621 TCCAGATAATAGCGTAGCCA 58 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000077532 1 1 2 82 9 12643230 12643918 TACCTCCGGCTTATACAACTG 59 12643962 12643980 AACTGAGCATTCATTGGGC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 1 2 2 80 4 148233573 148247007 TCTTTAAGTGGTGGCTCTG 57 148247051 148247069 GATTTGTTGCCCAGAAGGA 58 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000015742 1 1 2 119 4 148258392 148268216 GAGAATAGGAGAAAGTACTCACCA 60 148268294 148268312 TCAAAGCTAGTGGCCAGTC 60 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000087182 2 1 2 87 5 22392772 22392792 CACTTGGAAGAGATTTGCCA 59 22392842 22392860 TTCATTCAGTTCCAGGCGA 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 3 1 3 170 13 50559945 50559963 CTGTTTCCAGTGCAATGTG 58 50559141 50559159 TGTAGCTTCACAGCATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 2 2 2 80 10 82137032 82137149 GAGACCTGGAGTGTGATGAG 60 82136971 82136991 GAAAGGCCATACCAAAGTTCC 60 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266 1 1 2 81 13 89994544 89995435 GTGTATGAAGAGATTGGAAAGC 58 89995477 89995495 CTTCGAAGTTCTCCAGCTC 58 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000066823 1 1 2 80 1 224937973 224938440 TAGAGCATAAGGATGAGCCC 59 224938481 224938501 CCCAAAGTTCATCTGTCTCTG 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 1 2 2 86 20 19352584 19357846 GACTATGTTAGAGATCACTATGGG 58 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 1 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758 1 1 2 80 15 51452864 51452883 TGTTTGTAGCTGTCATCTGG 58 51452926 51454633 GTTCACAGCCTGGATAGAC 58 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758 3 1 2 81 15 51452864 51452884 TGTTTGTAGCTGTCATCTGGA 60 51452926 51454634 TGTTCACAGCCTGGATAGAC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110 1 1 3 80 20 2206406 2207997 GTAGCCAAGACACCAAGGA 59 2205930 2205948 TAACCATGTGAGGGATGGC 60 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 1 2 2 80 1 402125 403351 GGAGAAACATTGGTTCCCT 57 403394 403413 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151 3 1 2 80 5 17642034 17642053 AGTTATACTGGGTCTGACGG 59 17639000 17641994 TGAACTTAGCATCAAAGCTTGG 60 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 2 2 2 81 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477450 91477468 GTTTCTTTGCTCAGCTCCA 58 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502 3 1 3 80 1 197522726 197522747 ATTAGCTGAATACTTCACTGGG 58 197518520 197522685 ACTTTGACCAACCTCTCCA 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000073253 3 2 5 95 5 101935783 102010610 TTTACAATCAATGGGCTCCAG 59 102010667 102010685 TGCAATGGAAGAAAGTCCC 58 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000037446 1 1 2 80 4 7159302 7159324 CTGATTCTACCTTTGATACCAGC 59 7159364 7159523 GAGACCAGAGTCTCAGAGC 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438 3 1 2 81 6 36091139 36091474 GTCTGAGCACTCAGATGAG 57 36091518 36091537 CTACAGAAGTGGTGATACCG 58 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 1 2 2 80 8 68444705 68444724 AGGAGTCTCAACAGAAACAG 57 68434623 68442843 TAATCCTCGTGCTCTTCCT 58 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 3 2 2 133 2 198114403 198114966 CATCCTGGATGAGGTCACC 60 198112893 198112911 CTGAGGTAGAGGTGGAAGC 59 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 1 2 2 80 7 30318016 30319059 CCTTCTGAACAAGAGCCCA 60 30317954 30317975 GTACTCAGGATTTGGAAGACAC 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805 3 1 2 82 17 56960386 56962184 GAGTGCTTTAGATAAGCTTGC 58 56960324 56960343 CCTCTACTTCATTCTCCGTC 57 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000080811 3 1 2 82 4 8178031 8178049 GAGCTGCTAGGCAGTATCC 60 8178095 8178471 GCTATGTGATCTCTGCGGT 60 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867 3 1 2 80 1 214192882 214193384 CTAACAAGGCACCTCAGGA 59 214193424 214193446 GTACCTCATCTAGGATATGGAGC 60 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 3 1 2 80 1 214193388 214193483 CAACTACAGAGCAGAGAAGCT 60 214193525 214193543 AGAATGTCAAGCACGTTGC 60 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 2 2 3 80 18 56446295 56446316 GCCTGTATATCTGTCATGTCTC 58 56446356 56451297 CTGATATTTCGGCTTCTGCT 58 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 1 2 2 80 7 97042784 97047404 AGTACCACTCAGGTCAACTC 59 97042723 97042742 ACAAGTGTTAGTGCAGACAG 58 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 3 2 2 80 5 19541775 19542047 CAGCCCATTCTTAAGATTCCT 58 19541715 19541734 TGCAAAGTGTTTATTGGCTC 57 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428 2 1 2 90 15 51235203 51235221 AATCCTCATGACCTGCTGG 60 51235275 51245813 TTTGCTGGATCTCATCGGG 60 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310 1 1 2 80 6 48809749 48857855 TTCTCATCGAAGCCTTTCC 58 48857898 48857917 TCTTCCTTGTCTTCTTTGCT 57 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189 3 1 2 80 10 11828790 11828810 GATTGGTAACAAAGGAGCCAG 59 11828850 11830286 TTACTCCGAAGGTCTAGTGTG 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076539 3 1 5 138 13 77940590 77940608 ACCCTGACACCTGTAATGC 60 77940710 77942290 ATGACAGAGGAACTGCCTC 59 NA Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 3 2 2 81 5 67900755 67985208 TTGTTGAGCTTGTCATCATGG 59 67900694 67900713 TGGATATGCACCTGAAAGGT 59 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921 3 1 2 86 13 103285274 103287722 AATGAAGCAAAGGCAGGAC 59 103287771 103287790 TTTCAGCTGAAACCCAAAGG 59 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000064942 1 1 2 80 15 85946575 85946596 GTGGAAGAAAGCTATACACCAG 59 85943235 85946534 TCATCTCTTCTCGCTTCCA 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070 1 1 11 80 6 99098381 99098399 CAGGAATCACTGACAGAGG 57 99098441 99098789 AGCTTCTAAGATCTCGTAGGT 58 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299 3 2 3 191 13 52628706 52631324 GTTGAGAGGAAATCTAAGATCACTG 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 1 3 3 80 7 141065930 141065949 ATGATCTTCACCTGCTTCAG 58 141065991 141066206 TGACATCAAGATACCTCCCA 58 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000038798 2 1 2 90 1 102115703 102115722 TCCTAGAGTACACCGACTCC 60 102114502 102115650 AGGTAGTTGGAGACCATGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000047303 1 2 3 80 8 49037172 49037190 ACCTCATCTTGTGAGCCTG 59 49036258 49037128 ATCACTGTCCTCCCTTCCT 60 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060 1 1 2 133 14 81819838 81822916 CGAACAACAGGTCTTCACAC 60 81828396 81828414 CTTCAGGAGGCTCAGAGTG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000089234 1 1 5 81 1 79704027 79704045 TTCTACACCCTACGCACTC 59 79699342 79703982 GTGTCACAGGCTTGTTCAC 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076484 3 1 5 176 2 30664766 30666571 TGTCAATCTGGTACACCAGG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000008150 2 1 2 81 13 90461169 90465657 CTGCCAGTCTTCAATTAGTGG 59 90461108 90461128 ATCCGTCAATACCCATTTCAG 58 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079 1 1 2 80 10 17621127 17621145 AACAGACCTACAGATGGCC 59 17621187 17630194 ATCCCAGATCTCTATGTCCTG 58 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 2 2 3 82 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931377 46931396 CTCAAGGTTCATTTCCTGGG 59 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 2 2 2 80 19 44143513 44143531 ATGTGAATGGTGACCTGAG 57 44141134 44143470 TCACCGATACGTTGTATCTG 57 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000048141 3 1 2 80 3 112657763 112657901 GGCTGGAACTATCAGGGTG 60 112657944 112657963 ACCCAAGAATCCATGTCGAG 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340 1 1 2 80 1 219375871 219378885 TTGGGACTAGTGCTTATCCTG 59 219379075 219379093 CACAAAGAAGATGGCGCTG 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340 2 1 2 81 1 219375809 219375827 CCCAACATCCTTTGATCCA 57 219375872 219378884 AGGATAAGCACTAGTCCCA 57 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 3 2 2 80 1 187820157 187821321 TTATACACAGCAGGCCAGTC 60 187820096 187820114 AGCTTTCGCAGATTTGCAG 60 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 2 2 2 80 14 11201123 11201142 TCACATACACAGACGAAGAG 57 11201184 11201308 TGATTTCACACTTCCCAGAG 58 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 2 1 2 80 3 48469768 48469786 TCAACTGTGATGGCAAGAG 58 48469412 48469725 GTGCACATTATCATCTGCTG 57 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000086635 3 1 2 81 5 102641811 102680622 GAATGTCCCAACAGGTTCC 59 102641748 102641766 TGGTCTATCTCCTCCAGGT 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323 1 1 2 127 2 60952536 60956196 ATTGATGCGAACATGGTGG 59 60956287 60956305 GTTGTGTAGAAAGGTGCCC 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323 2 1 2 128 2 60952536 60956196 ATTGATGCGAACATGGTGG 59 60956288 60956306 GGTTGTGTAGAAAGGTGCC 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000040701 1 1 2 91 2 60953049 60953067 GCTGCCAAGTAATGATCCT 58 60953119 60953302 GAATCCTACCTTCCTTAGTGTC 58 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170 2 1 2 80 8 47692613 47692632 AGTACTCGTCCACTGTTCAG 59 47692675 47695439 AGGGATAGCCTTTCAGGGA 60 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000060810 2 1 2 141 6 28144216 28168874 ATGAAGCTGCTAAAGGCTC 58 28168979 28168997 CTCCACTCAGTGAATCCTG 57 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830 1 1 2 97 6 28144142 28144160 AAGATGAGCTGGAGCAGAG 59 28144220 28150831 TTCTTCCTCCTTTAGCAGCT 59 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 2 2 2 80 1 101071337 101071355 GAAGGAGTCAGCCATTGTG 59 101071399 101071498 TGTTCACCATCTGTGTTGG 58 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000036051 1 1 2 156 8 48422040 48422058 GTACCTCCTACACCGTGAC 59 48422176 48426006 GCACTCTTTGAATTCTTGGCT 60 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 2 2 2 88 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322891 214322909 ATCAGGAGTGTGGCTAGGA 60 NA InUTR Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 2 5 7 80 15 5509800 5509819 GCTAGTTCAGAAGGAGAGGG 59 5466199 5509759 CGAATAAACCAAGACAGGAGG 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232 2 1 2 101 2 233606680 233617123 GCAATTAGAGAAAGATAAGGGC 57 233617185 233617203 GTAAAGTGAGTCCTCTGCC 58 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000073865,ENSRNOT00000063883 2 2 3 97 11 71027570 71030013 TATGACAGACACAGGTCGC 60 71027491 71027509 ATCTCAGCTCTTCTTCCCG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494 1 1 2 81 7 31822066 31823608 CGTGGAAGAGTACAGTTGTG 59 31822004 31822022 CAGCCCACAACTTAAGACC 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000077726 2 1 2 83 18 58330804 58331390 ATGCTGCCAAAGCTTATGAG 59 58333456 58333474 CTTTCTCGATCAGCTGCAC 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 3 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833086 TGTCAATGTTTGTGACCCAG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 1 2 2 80 16 20801211 20801229 CCTTCCAAACAGTTGTGCT 59 20801042 20801168 TCTCCATTCCCTGATTGAGC 60 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000072536 2 1 2 80 16 20806737 20806756 AGATGCTTCGAGAACTCCAG 60 20806257 20806694 TGATCTCCTTGACCTGCTG 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458 2 1 3 83 19 49475335 49475353 GTGCATTCATGCCAAACAG 58 49475400 49476062 TTGAATCCACAGCATAGCG 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 3 4 4 81 12 19760583 19938339 GAGTGGAGCAACAGATTCC 58 19760520 19760538 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 2 2 2 80 17 66243017 66245073 TCTTACGATATGCCCAGACTC 59 66242957 66242976 CTTCAATCGAGCCATTCCTC 59 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000081280 1 1 2 80 10 31357911 31359499 AAGAGAACAAATCCAAGCCC 59 31357850 31357868 GAAGGACAGAATCACAGCC 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 87 1 257590073 257592414 CTACATCTTTCAGAAGGGTGG 58 257592463 257592481 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616 3 1 2 81 13 113917074 113917094 GCAAATCTTCTAGTCAGTGTG 57 113915559 113917032 CAAGAAAGCTGTTCACAGAC 57 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000091263 3 1 2 80 6 58523803 58540100 CATATGATTCAGAAGTGCCTAGC 60 58540138 58540158 CTTCTGTTCTGCTTGGATGAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 3 2 6 80 5 47931467 47933462 CTACTGAAACAGCCTATTCCAG 59 47933501 47933521 CTTGTCTCCAACTGAAATCCA 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 1 2 8 155 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979764 1979782 AAGCTTGAGCTCGTAGTCC 60 NA InUTR Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646 1 3 5 91 4 140268538 140272582 CTTGGGCTTGGTTGATGAC 59 140272636 140362485 GCTTAAAGAGGCAGTCTCTG 58 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000073669 1 1 2 83 13 48649370 48649675 AATGAGGCCATGAGAGTCC 59 48649722 48649740 GTAGTTCCCTTGGGTGGAC 60 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 3 2 2 80 5 139711370 139711390 TCCGAGTACAAGAACTACCAC 59 139708845 139711331 CTTCTGCACTGATCATCTTCAC 60 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 2 2 2 80 X 116758230 116758248 CCGCATCCAGAAAGAAGAG 58 116757425 116758187 TGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 1 1 1 83 3 8657947 8657966 TCTATCTGGCTGTGTCACTC 59 8657523 8657541 CTGTCTGTTCCTCCTTCGG 60 NA DesignNoJunction Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000079260 3 1 2 97 17 78497745 78499808 CTCACTATGTGCAAGACGG 58 78497666 78497686 ATCTTCTATGTAGTCCGGCTC 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 2 2 3 83 X 65068707 65068727 AAGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 1 2 4 112 1 50930321 50930341 TGAAGCTGGGTTAATCTACAC 58 50930412 50931121 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 1 2 4 112 1 51049431 51049451 TGAAGCTGGGTTAATCTACAC 58 51049522 51050231 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 3 3 3 80 5 169281698 169285300 GAAAGATAGCAAGATGGACGT 58 169285342 169285360 CTCTCCGCTTTCTTCACAG 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000059073 2 1 2 81 6 108024446 108026762 GAAGGAAAGCTAAAGATCAAGG 57 108029790 108029809 CTCCTGTCATCATGGATTGG 58 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193 3 1 2 84 10 37050002 37050286 GGCTACGACTACAGTCAGG 59 37049936 37049960 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000091273 3 1 2 104 3 153441410 153441428 CTCAACATGTTCCAGACCC 58 153441493 153441611 GTGAATCATTCTCTTAACTGCC 58 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360 2 1 2 100 5 151104430 151107181 GCAGTCATTACAACAGCCAG 60 151104349 151104370 GTCTCCGTTAGTTGTGATTGAC 60 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264,ENSRNOT00000003946 1 2 2 82 X 70445542 70445560 CCTCACAGCCTTACAGGAG 60 70445606 70445728 GCAGGTTAGCAACCATCTG 59 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 1 2 2 80 12 18704470 18704490 GTACCAACCTTTGCTCTTCAC 60 18704528 18707540 CTTCTTTCTGAACCTTTCAGGAC 60 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171 2 1 3 141 15 11874675 11881758 CTTGCTTGAAAGGAATGGGA 59 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 1 2 2 80 10 71421011 71423628 TGGCTTTGGAAATTGGCAG 59 71420949 71420970 TGTTTCATGTAGTGCTTCTCAC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792 3 1 3 98 6 108507328 108507346 ACTGGAGGTGTGAGAACAG 59 108506907 108507269 CATCTATGTCAATGCAGTCTCC 59 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 1 2 2 83 10 67476597 67477097 TGGAAGAGATTTCTTCAGTCG 58 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 2 3 3 80 4 23117460 23117479 CCCTTGTGATTCCTATTCGT 57 23115919 23117420 TGTCTTTATTAGTTAGGGCCTG 58 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000041365 2 1 4 80 12 5685265 5685289 TCAATGACCATCACACCCTC 60 5685204 5685222 GTATGCACCAGTTTCCACC 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000038132 1 1 2 80 9 65943463 65943481 GAAACAGCGGGAATTCTGG 59 65931119 65943422 ACAAATTCCTCTTTAGATCGGG 58 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000084317 1 1 2 80 1 48677746 48680131 TGAGTATCAAGCAGCTTGTG 58 48680172 48680192 GCATGAACTGGTAATACTGCT 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 2 2 3 80 15 60745330 60746561 CTAAATCAGAGTCACCATTCAGG 59 60745272 60745295 GATGAAATCAATTCTGAGTCCTGG 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246 1 2 5 80 X 71310533 71310781 TCTGCAAGAAGGAGATCTGG 59 71310472 71310490 GTGCAGAACTCTTGGAAGG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076709 2 1 5 80 X 71310534 71311522 ACTGAGAGCAGGAGATCTG 58 71310472 71310490 GTGCAGAACTCTTGGAAGG 59 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000051558,ENSRNOT00000010991 1 2 3 80 8 68281900 68281918 GATTCCAAATAGTGGCGCG 60 68275709 68281856 CCTATCACATCCAGCACGT 60 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 3 2 2 146 4 151513693 151513712 GTATCAGGAGCACATGTCCT 59 151508269 151513584 TCTCGGCTACCTATCTGCA 60 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 1 2 2 89 10 45313500 45313618 CTTGACCAGGAAGGAGAGC 60 45313671 45313689 ATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 3 3 3 82 11 81635522 81635540 TCGACAAGTACAAAGCGGA 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531 3 1 3 84 5 173264686 173264704 CACAGATGTCTTTGTGCGG 60 173264751 173265127 TAAAGGGATCTCCAGTGTCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436 2 1 2 122 1 29432192 29432210 TTGAATCGCTATCTGCTGC 58 29436644 29440772 AAATGGAGACTTTGTCTCCTG 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000010675 2 1 3 137 15 12570127 12578673 ACTGACGACGAAGTCATCC 60 12578772 12579449 GTACTGGCTGTATCCTTCCTC 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191 2 1 3 83 10 12054851 12054869 CTGAGCTACACGAGATCCA 59 12054916 12055482 GTCACGACAAGAAGGAAGG 58 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442 1 1 3 80 1 192539602 192539620 TTCCGGTATATCGACTGGG 58 192539664 192574696 GTCTCGCTTGTCTCTAGCT 59 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418 1 2 3 80 1 192234075 192316382 TTCATTTGGTTAGGTTTGCAGG 60 192379900 192379918 CGTGACGAATTCATGGCAG 60 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207 3 1 2 92 9 70432374 70432394 TAATAAACAGGCTCACAGGTG 58 70404283 70432039 CATCAGAGTCTTCTTCAATTGG 57 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 3 3 3 80 X 70333252 70333271 CATCTCTTCCAGAGAAGCCT 59 70333311 70333993 AACCAGTTCCAAATACTTTGGC 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 1 2 2 80 8 116327754 116328261 CGCTTCAAGTATGGAGAACTG 59 116328300 116328321 CAGGACACATTGACTATGTAGG 58 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 3 3 3 81 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900107 TTCTACTGATCATCTGGTCAGC 60 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486 2 1 2 82 5 107727498 107735724 CTTCTTGCCAGCATGTACG 59 107735768 107735788 TCGTGAAGTGAATTAAGCTGG 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000082529 1 1 2 81 12 12944798 12944816 TAAGCCGCTTGATGAAGAG 58 12907761 12944753 GTCTTCAGGCACCTTTCTG 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371 1 1 2 80 4 82816362 82816381 AAGTGGAAAGAGCAAGTGAG 58 82816421 82816863 CAACTGTAGACTGTAACTGTCC 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371 2 1 2 80 4 82816369 82816389 AAGAGCAAGTGAGAATTGCTG 59 82816430 82816870 TCTCTGCCAACTGTAGACTG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346 3 1 4 80 17 72247450 72251889 TCTTCTCAAGAAGGCATGC 58 72251933 72251951 ACGGCTTCTAACTGTTCCT 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000044956 3 1 2 81 8 111840529 111840551 CCACCAGAAATATACAGTGACAC 59 111840130 111840489 TTAAGTACCTGTTCCGGCTC 60 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 3 2 2 81 6 110646940 110646960 TTAGGTCTTGGGATGACAGTG 60 110646199 110646898 CCAACCTGTGATCACTTCTG 59 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 2 2 2 80 1 162862544 162865957 ATTGGACAAGGTGCTTCAG 58 162869988 162870008 GTTCATCTGTTTAATGGCCAC 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000050188 2 1 2 93 5 173067804 173067823 CGATTTGACCGAGATTCTGG 59 173067879 173067899 CACATAGTCCCTCGGTAGG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181 3 1 2 80 20 20274077 20274781 CATAGAGTCAAAGATGGTGGTG 59 20276037 20276055 ATATTCCCGTAGTGGGCAG 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688 3 1 2 80 4 76852062 76908452 CATAATTCTCAAGCTCGACCA 58 76908492 76908512 TTGGGAGAATTGAAGATCGTG 59 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000034041 1 1 2 80 2 27258068 27266478 CCAAACAAACTCAACATCAGTG 59 27258009 27258030 CTCACTGAGAAGAAAGTTGACG 59 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 2 2 2 80 9 67699616 67702709 CTCTGAAGCCATACAAGTGAC 59 67702749 67702769 GCATATTCACATGGAAAGCTG 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 1 3 3 92 10 13321420 13323535 CATTAAGGGCATCCAGCTG 59 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 2 2 4 101 5 152685885 152685903 CAGAGGAGAAACTGACCCA 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521 1 1 2 80 6 53524731 53524749 TGTTCTCCACCAGTCTGTG 59 53506438 53524690 GACTTCCAATACTTGCTTTGGA 59 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 3 2 2 85 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762103 70762121 TGGATGATCAGGGAGATGC 59 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 1 2 2 80 19 39386429 39389315 CAATTCATGCCAAAGTTCCT 57 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 1 2 2 80 8 115589170 115589650 TATCTTGCTGTCATTGAGAACC 59 115589690 115589709 CCTACCCACTTCATAAAGCC 58 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454 3 1 2 97 1 219862079 219862100 GGAAGTATCTTCTTGTCTGCAG 59 219861463 219861757 CCTATCAGGTGTCCTGTGC 60 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 1 2 2 80 2 235345530 235345940 TGGCTTCTACAGAAGTAGGG 59 235345983 235346001 ATTAGGGCAGTTCCTCTCC 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 1 2 2 81 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076057,ENSRNOT00000088114 2 6 7 80 X 70644939 70645257 GCACTTATGGAAATGAACCG 58 70645299 70645318 TTCTTGCTCCAGTTTCATGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450 1 1 7 122 X 70597270 70600494 TATGAGCAGGTGAATGGCA 59 70600976 70600994 GTCATCAGGGACATGAGGG 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000035821 2 1 4 80 2 57876737 57933370 CTGTCATTGTGGGAATGGC 59 57876675 57876698 TAGTCATGTAATAGACCACAGCTC 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251 2 1 2 80 8 5985289 5985588 TTCCTTTGTTGACAGCAGG 58 5993973 5993992 TGCTAATCTGACTGGTCTGG 59 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 1 1 1 93 16 21087811 21087829 ATGAGTTGGAGGATGACGC 60 21085633 21085651 AAAGTCATCTTGTAGCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940,ENSRNOT00000074087 3 2 6 149 17 77195784 77195803 TATGTTGTTGGCTGTTGCT 58 77195916 77196913 CACTTCGATTCCCACACTC 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253 2 1 2 80 3 114010846 114010865 CTCAAATGCCACACTACCTG 59 114006217 114010803 CTGTCCAAACTCGAAGTGC 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000051342 2 1 2 81 17 69391736 69395070 AAAGAGAACATGAAGCTGAGTC 59 69391676 69391694 TTCCACCAGCTATGTACCG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415 3 3 4 80 1 154447408 154447429 CAACCTTAATATACAGCCAGCC 59 154447467 154457087 ACATAAACTGTATCTGTGCTCC 58 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000083055 1 1 2 140 1 163114613 163114631 TTACTCAGCTCTGAAGCGG 60 163103735 163114509 CAGATATCCTGCAGAGGCC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 3 3 5 81 20 3409195 3409321 GAGCATCAGAAGCAGATTCAC 60 3409134 3409155 TCTTCTTCCTTGACGACTACAG 60 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 2 2 2 80 3 128336299 128336421 GAAGGAAATCTGCGAGAAAGAG 60 128336459 128336480 TTGGCTTCTGTTATCTTCTCCT 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 3 2 2 80 3 128336300 128336421 AAGGAAATCTGCGAGAAAGAG 59 128336460 128336481 CTTGGCTTCTGTTATCTTCTCC 59 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000075512 3 1 2 80 11 82696369 82696388 ACAGATTAGATCCCAGCGAC 59 82698795 82698893 GATGACACTTACTGTAGCCCA 60 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 3 2 2 81 6 1581574 1583197 GTTGTCCTGTCAGCTTTGG 59 1581511 1581532 TAGGTGCTTTGTAAGAATGGAC 59 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492 2 1 2 80 6 1570535 1570553 CAAAGAGGAAGAGCAGCAC 59 1567048 1570494 AATGTCTCTTTCTCAGGTTGTC 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000079440 3 1 7 149 1 102924360 102929682 ATGATTGTCACAAACCCAGTG 59 102929793 102930389 GACCTCATAGCCACCATCC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851 1 1 7 80 1 102924307 102924325 TCATGAAAGCCATCGTTCC 58 102924366 102926955 AAATATCGACTGGGTTTGTGAC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185 1 1 3 146 X 120916784 120917495 GAATTAAGCAATGATGCCACAC 59 120928699 120928717 AGCAAGATGCTTTGCTCTC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 1 2 3 80 X 120959345 120959367 TCACTGTCCATGAAGTATAAGGG 60 120959404 120960427 GAGGTAAGTAAAGTCATGGCTG 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 2 2 2 81 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777106 87777127 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642 1 1 10 88 7 117253868 117289764 CATTGCAGATGAACGAGACC 59 117253490 117253508 CACTGATGTGCCTTTGAGC 60 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000086368 2 1 2 80 15 19811433 19811933 GAGAGTTGATAACAGCACGG 59 19811372 19811392 TGAATCTCATCTTGGCTTCGA 60 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229 1 1 2 80 4 7707685 7769922 AAAGACATGGAGGAAACAAGAG 59 7769963 7769981 TCTGCAAATTCCAGCAGGA 60 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 2 2 2 81 3 11790208 11791182 GATGGCCCAGATTTCAAGG 59 11791225 11791245 CTTCTCATACAGAATGGCACC 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 3 2 4 80 7 142035043 142036927 AGTTCTCCAACGGAATAGGC 60 142034982 142035003 CGACAAAGTACATGTTGATGGA 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000020705 2 1 3 80 9 90891938 90907023 TCAGAAACGATTCCATGTATGG 59 90907063 90907082 CATCTACCACAGACATGTCC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000064613 2 3 5 80 8 73194750 73194769 GTCTACAGCTGTGTATGACG 58 73192767 73194707 CCATAGTCAGAAGCTTGCC 58 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 2 1 1 78 8 43480695 43480714 CTTCCTCTTCAGGCCTTAGG 60 43480604 43480622 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000083419 2 1 2 131 8 53736800 53739331 AGACACCACTCAAGGATGC 60 53739426 53739444 GATCAGGGAGAGTGAGCTG 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 1 2 2 80 1 188063815 188087774 CAGCTCTCAGAATGAAGTGGA 60 188063755 188063773 TCCACATTCAGTCTGCCAG 60 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 2 2 3 80 19 53638215 53639691 AGAACGCAAACAAAGAGTGG 59 53639732 53639752 ATTGCTGTAGAACCTACTGGG 60 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000085655 2 1 3 80 18 63024200 63029319 ACAAGACGATCATCAGAAAGG 58 63029359 63029379 TTTCTGTCACAAGATCTGCAG 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 2 2 2 92 4 181346953 181347346 AAGTTGTGGAGATAAGCCAG 58 181346880 181346898 TTCTGTGTAAGTGGGAAGC 57 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323 3 1 3 91 12 11605306 11605324 AGATTGTCGGAGTCTGGTG 59 11605146 11605251 TAAACTGAGCACCAGGAGC 60 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 3 2 2 80 4 72011188 72013102 CTAGAAACTTATCTCCAGCTCCA 60 72011130 72011150 AGTGAGGGTTTGGTAGTTAGC 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000017550 2 1 2 81 X 122945068 122945091 GAGAATTTCTCTACTGTGTATCCC 59 122945130 122951528 GGAAGCTCTGAATTCTCCCT 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000044778 2 1 3 94 1 3872220 3890876 CGACTTCCGATGTGAAAGAC 59 3872145 3872163 AAGAGCAGAAATGGCTTCC 58 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 1 2 2 80 X 72686384 72686544 CAAGTCAGGGAACAAGGAG 58 72686588 72686606 CTGGCGTCTCTTTATTGGT 58 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312 3 1 2 81 2 84522999 84523019 CATTGGATCCAGAATTCTCGG 59 84520579 84522961 CCATTCTTTCTAGATTCTGACGTG 60 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 3 3 3 60 13 79888255 79888274 ATCTATGCCCGGAAATACCA 59 79888296 79888315 GTTGTATCACCACACTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576 3 2 3 80 3 11198446 11198465 AGCAAGTACTCGACTCTCAG 59 11198503 11199043 TCTAGGAATAACTGAGGATCTGAC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000090218 2 1 2 99 4 152960564 152960582 AAAGTATGACTGGTCGGGC 60 152960644 152966545 TACCCAGTCTACCTTGTCCT 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312 1 1 2 80 1 56973184 56975910 AGCAGATATTAAAGGCCAGTC 58 56973124 56973143 GATCTGCCAATTCAAGTGAC 57 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 2 1 1 106 7 140450501 140450519 CTTGGATTCCAGGGAAGCT 59 140449623 140449641 ATTTGCACTTCCGCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000043851 2 1 4 80 4 85694882 85703849 AGTCCAGCATCTACTTACGG 59 85703891 85703910 AGGCGAATACTGTGTAGTGG 60 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442 1 1 2 85 6 49844498 49844516 GTAACATTTGCCGGTCACC 60 49844195 49844450 GTCAATGGCCCAGTTATCTG 59 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000007287 2 1 2 81 6 49844351 49844456 ACGTTTCAGATAACTGGAGGA 59 49844290 49844308 TTCTGCCCTCGATAGTCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000078830 3 1 7 80 5 166009917 166012352 GATATTCCTAGGACCTTCTACCG 60 166009859 166009877 TGTCACTCGGTTCAGAAGG 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 1 2 2 80 14 21998355 21999126 TGGCACAGAAACATCATCC 58 21997904 21997922 GGCTGTATGCATTCATCCT 58 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 3 2 2 81 14 21998355 21999126 TGGCACAGAAACATCATCC 58 21997903 21997921 TGGCTGTATGCATTCATCC 58 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 1 2 2 81 3 5121019 5121040 TGTCCAGAAAGTTGTAAGTGTG 59 5122313 5123383 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860 3 1 3 81 3 117430305 117436112 GGGAATTGGTCTGGGAGTC 60 117436152 117436175 GCAAATAGCAGACATAGAGATACC 59 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830 3 1 2 84 10 84988061 84988080 GAAGACATCATGCCTGAGAG 58 84988126 84988300 CAAAGTACCTCTTGTGCCAG 59 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 3 1 2 81 7 49063874 49074132 GGAAATATCGTGGTAAAGTTGC 58 49063814 49063833 ATAAATGCTTGAACGCTTCC 57 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 2 2 2 80 18 77291673 77291691 TCACTATGAGACGGAAGGC 59 77275848 77291630 AAGTAACCATGTAGCTGCAC 58 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000077707 2 1 2 80 1 47985726 47985744 GAGTAGGACCGATTCCAGC 60 47989494 47991232 CAAACACGTCAACATCTTCCT 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95234839 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 2 1 1 86 1 221596907 221596925 TCAGTGCTGTACCATCAGC 60 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000041514 1 1 5 80 14 22213008 22213026 CAATCTCATTGCCTCAGCC 59 22214543 22214566 GATCCTAATGTGCGTCTTTCTC 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704 2 1 5 80 14 22213008 22213026 CAATCTCATTGCCTCAGCC 59 22214542 22214566 GATCCTAATGTGCGTATCTTTCC 60 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000090779 3 1 2 95 17 78822723 78826621 GCTGTTCCCAGAAATAATTGC 58 78826678 78826696 TCTGACCATTTCTTGGCAC 58 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000080666 3 1 3 109 10 46118789 46118807 CAAATGGGTGTCATGCGAG 60 46118880 46121876 TCACATGTAGCCTTGAGGC 60 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000067639 1 1 2 80 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658849 6658869 GAAGAGCTGATCCACAGGG 60 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 3 2 2 102 18 35781600 35781618 GACACTCCGCTATGAGGAG 59 35762732 35781534 ATCTTCCTCCCTGATGGTG 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689 2 1 2 81 3 100366248 100366267 TTGGGTTTGAATTTGTGGCT 59 100366308 100374999 ATGCAAATACTAGAAGTGACCG 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 3 2 2 86 19 563180 563298 ACATTTGGGAACAGGATGG 58 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000081547 1 1 2 81 19 562362 562382 GTTTACAAGGTGGCTGCTG 60 562426 562446 CAGGTCCGTCTTCTATACCAC 60 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000078589 2 1 5 80 1 15815320 15815340 GTTCACTTCATACCAGAAAGC 57 15815381 15816598 GAGATGTCAATCCTCCTGTG 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700 1 1 2 80 3 119024872 119024891 GAAGTCACGTTCACCACAC 59 119028044 119028063 GTGATTAATGGTTGCAGCCT 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716 3 1 2 81 6 124598864 124598884 TCTTTCTGTGGGACTATTGAG 57 124583636 124598821 CTGAGCTCATTCCCTTGTC 58 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 3 2 2 80 15 27765418 27765623 GAGGATACGTAAAGCTGTGG 58 27765357 27765377 TGATGCAGTTTAGAGACTTGG 58 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000000139 3 1 2 84 5 147866172 147867574 ATGGTGTCAGAGACCATGG 59 147866106 147866125 TTTCCTCAGGGTTTAAGGCA 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 3 2 2 80 3 54548464 54548483 TCGCAACAATCCTTAAGGAG 58 54547288 54548423 CAGCTTTCAAATCCCTATGGA 58 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000057266 3 1 2 81 12 41282913 41282931 GAGGTGGAGTTTGATGTGC 59 41284774 41284857 CATAGATTTCCGTGTTTGGGT 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 1 1 1 70 14 21821903 21821921 AATAACTGCTTGTCTCCCG 58 21819575 21819593 CAGGTAACTCATCACTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121 2 1 2 81 1 92091308 92091329 ACCAGAACTACAACTATGAGCA 59 92087488 92091268 GAAGTTTCTCTACTTGGGCTG 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459 3 1 4 187 16 6189094 6189350 TATGTCAGACCCTACAGCC 58 6187653 6188946 TTCGCTATATCTTGAATCTGCG 59 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 1 2 2 80 12 47972914 47972932 TCCCAGAAGAAGTCCAACC 59 47971606 47972870 GTCATTGAGGCCGTAATCC 58 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000 2 1 2 80 12 47953440 47953462 GAATGCACTCAATCAAGAACC 58 47953378 47953396 GAGAACATCGGATCCACTC 57 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748 3 1 3 82 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935191 154936959 CTGTATTAAGAGCATAATCCCTCAG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 3 3 6 98 20 3430210 3430228 GAGCAAATGGCCAAGAAGG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000037115 2 2 3 80 2 174336900 174336919 CTGTGGAGAATGATGTTGCA 59 174335450 174336860 GGTTATCTCTATCATAGGCACC 58 NA Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000010243 1 1 2 80 8 2662685 2678115 TCTGCATCAGAATCCAGGG 59 2678157 2678177 CATTAGATGTGATGCATGGGC 60 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259 2 1 2 88 5 120459588 120461027 TTGGCAAGATCAGAAATCAGAG 59 120461076 120461094 GTTCATCATCCGACTGCTC 58 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725 2 1 2 80 4 100423162 100424700 TGTCCTCAAAGATTTGGAAGC 59 100423102 100423121 AACTGGGCTAGGTAGTTGTC 59 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443 2 1 2 85 10 34954488 34954509 AAGCTGGATGACATTCTAACAG 59 34955438 34957621 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 3 1 1 60 5 106952304 106952327 CAAGCGATCCCTATTCTATATGAG 59 106952343 106952364 CCTTTGATGTGAAGATGTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000078577 2 1 2 94 10 11874602 11877430 GACCTCCGCAATTTCACAG 59 11874526 11874544 GAGACAAGCCCAAAGTTGG 59 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628 1 1 2 177 1 221740143 221743005 CTAACCCTGAGGACAGGTC 59 221743146 221743370 GCTGGAGGCTTGTAATCTG 58 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 1 2 3 80 X 77154658 77157302 GATGGCTCATAAGGTAAAGGT 58 77157342 77157362 TTTACTTGGTTCACTACTGGG 58 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110 3 1 2 80 1 171921020 171921039 CTCAAGCTGGTTGGTATGGA 60 171921078 171929059 GATCACATTCAGAACTGACTCTG 59 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 2 2 2 80 4 22553176 22553195 AACAGCTGGTTCAACAAGTG 59 22553233 22561669 GAGTTCTTCAAGATAACCCTTCTG 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000017927 2 1 3 80 4 100281086 100281109 GAACAATCACTCCTATCTGTATGG 59 100281147 100284521 CCATCCACAGACCAGTAGTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000080419 1 3 12 99 20 3358183 3358201 TTCTTTGCCCATCAACACC 59 3360455 3360679 CCTTCAGGAATTCTCTGTCAC 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000091595 1 1 3 80 11 84399536 84425173 ACAGATCAGTTTGGAATGCC 59 84425215 84425234 GAATGCACAGAGATGTCCAG 59 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000042372 3 1 2 80 10 104747516 104747539 ATGAGGACTATAACTTCCTCACTC 59 104747457 104747477 CCCTCATCTTTCCCATGGT 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098 1 1 2 81 10 85964772 85964791 ACAACTCCAGTTCCAGTCTG 60 85963475 85964728 TTCTGCTTCTGTTTGGCAC 59 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 3 2 2 101 7 121151327 121151345 GTGAAGTGGAAAGGATGGC 59 121141741 121144277 TTTCTCCTCCTTCTCCTCG 58 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 2 2 2 80 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298255 167298274 CAGTAGCTGTGAACTTCTGC 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537 3 1 2 83 10 86687976 86690582 CAACACAGGTGGTGTTATCAC 60 86687913 86687934 CTGTCACTATAGAGGGACTCTG 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 1 2 2 183 1 56242593 56289144 GTTCTTGAGAGTCGATCAAGAC 59 56289288 56299800 CCTGGACACATCTTTGCAG 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000080114 3 2 3 105 14 22122626 22124644 ATGAGGAAGGGCATTTCAG 58 22124712 22124731 ACTTGAGTGTTGACTCTTCC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000091506 1 1 2 80 1 227496071 227497253 AACCAAAGCCTTTGCACTG 60 227496009 227496027 GTGACGAAGAAGAGACCGA 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 3 3 3 80 4 147361935 147372232 TCTCACAATGCCATCAGGT 59 147372273 147372294 GTCGATATCACTGGAGATCTCC 60 NA Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 3 2 2 100 1 212539866 212539885 CCTTTGCTATGGCACTTCTG 59 212538619 212539804 GATCTTGTGCCGAAGTAGGA 60 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000085877 1 1 2 80 20 31473423 31473442 GCCTAGATGGCAGTAAAGGA 59 31468407 31473380 CTGGAGTACCAGGCAATCC 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000041473 2 1 4 80 7 51425413 51431824 ACACAGAGCAGGTCATACC 59 51425351 51425371 TCTTGCTTGTCTAGATCTTGC 58 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950 2 1 2 81 4 120295693 120295711 GTGATGACTGGGACCATCC 60 120219424 120295650 AGTCATCCATTACCTTGAGGG 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000017323 2 1 2 83 4 120295693 120295711 GTGATGACTGGGACCATCC 60 120233422 120295648 CACTTTCTTCACCACCTTGAG 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 3 2 2 80 20 28046426 28047182 GGTTCAGAAATTGCCTGTCC 60 28047222 28047243 TCACTGTAGTCTTCAAGTTCCT 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000001044 3 1 2 83 20 28057755 28057773 GCCTAGTCCGAAATGAAGC 59 28057820 28057925 AATCCCACTGTCCTTCAGG 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 2 1 1 60 3 61686338 61686359 GAGTGGATGAAAGTGAAGAGGA 60 61686690 61686708 TGGCTCCATATTCGGACAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 1 3 8 80 6 128053950 128053968 AAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680 1 1 8 80 6 127946756 128075359 GCACACTAGGAGAGGACAC 60 128075403 128075421 TGATGGAGGCCAATGTGAG 60 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274 1 1 2 80 7 125960227 125960245 GACTGTGCAAAGAGGAAGC 59 125960286 125963173 TCCAGCATCATCAGTATCTGAC 60 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403 3 1 2 93 18 61259173 61259191 TTGGCTTCAAGATCCTGGG 60 61259246 61308863 TGATCAGATGTTTGGAGTGGA 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349 1 1 2 80 17 82085631 82085649 GTACCTCACCCTCAGTTCC 59 82085693 82086800 TGGCATAACCCTTCTCCTG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000003021 1 1 3 81 14 34561655 34562178 CTTCTCGGATACAAGCAGG 58 34561592 34561611 AGTCTCCGAAGACTATGGAC 58 NA Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 1 2 2 80 10 37164357 37166077 GGCTTCTCTAGGCTGTATCTC 60 37164297 37164315 ACTGGATTGTGCTGATGGT 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000073528 1 1 2 80 1 1772310 1774172 GACTTACAGACCCTGTCCG 60 1774216 1774234 ACTGCTATAGGAAGGGCTG 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000090170 2 1 2 84 13 49880249 49880268 GACTCCTGAGATCACGAGTG 60 49880315 49881079 CACACTGGGATCCTTCTGG 60 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000007187 1 1 4 80 10 18942464 18942482 TTAAACTCATCACCGGGAC 57 18574679 18579601 GATCATCCTCGATCTTGTCTC 58 NA Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 2 1 1 61 13 49935404 49935423 TCTGGAGAAAGATACACCCA 58 49937868 49937889 TCAGTAACTTCTTCAAGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 1 1 1 60 4 149880293 149880311 GATACGCGCAGAATGTAGC 59 149881907 149881927 GAAGAATCATACTTGTGGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784 1 1 2 80 20 20644279 20650228 TTTGGTTCCACTTGTAGAACAG 59 20644220 20644239 ACTTCACCATCAATGCTCAC 59 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617 1 1 2 82 1 281825476 281834164 GCCTAATGCAATGGGTTCAG 60 281825413 281825431 TTCAGATTCCACAGCTGGG 60 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 3 2 2 100 7 129860680 129862038 CTACACTGACTTTGATGGCAC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000079700 3 1 2 80 10 13756021 13756041 GAACCGAGTACTTTGAAGCTG 59 13756083 13756524 CCACTTGGAACACCTTGGA 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656 1 1 2 88 6 126466347 126466365 TACAAGGTGTTTGTGGTGG 58 126460616 126466295 GATTCACGATCTGAGGTGC 58 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656 2 1 2 88 6 126466347 126466366 GTACAAGGTGTTTGTGGTGG 59 126460617 126466296 ATTCACGATCTGAGGTGCC 60 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530 3 1 2 83 12 22965194 22965673 GAGAAGACTCACAGGTCCC 59 22967757 22967775 TGGTCACCTTTGGAACCTG 60 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 1 2 2 80 2 256692087 256692106 CAATTAGCTCAAACCCACCC 59 256692144 256693867 GCTTATCTGAGAGCTTTACATGAC 60 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195 2 1 2 158 5 159722271 159722289 TGAAGTCTGGGTCCTTGAC 59 159722826 159724024 GATGACACCATAGCGTTGG 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 2 3 3 81 1 198230548 198230566 ACCAGAAGGCAGATGATGG 60 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000003638 3 1 2 83 18 312839 323148 GATTACAAGGCTCTGAGGG 57 312774 312792 AATGGCCTTAATGGACTCC 57 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431 3 1 4 133 1 81144004 81144022 GATGGTGACCTTTAGGGAC 57 81124968 81143908 GTTGATACTCCACTGAGAGC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021347 1 1 5 89 1 259421071 259425633 GATAGAAAGAGCTCAGCAGTC 58 259412624 259412642 CTTCACTGCATGGAAGTCG 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777 1 1 2 80 3 45088988 45110853 AAGACATACGCAGTAACTTCC 58 45088928 45088946 GATTTCCGGGATACTGGTC 57 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 3 2 2 80 11 69018520 69019952 GCTAGAGTCTGAAGAAGATGTC 58 69018461 69018481 GAGAAGTAGGGCTTTACATGG 58 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 3 4 4 81 1 250693684 250697776 CCTGTTTATCAAGGAGTATTCCC 59 250693625 250693643 GAAGATTCCAACGACGCTG 59 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491 1 1 2 81 19 38091356 38111347 CACTTTAGATGATGTGAACGAG 57 38111389 38111407 ATCTCTGATCACCTCTGGG 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033 2 1 3 80 6 28524558 28524578 GGAAAGTTAAACGATGTCAGC 58 28524617 28530151 GTAGAATTCATTTCGGACAGCT 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 2 1 3 81 14 34135880 34142733 GGCGTGTTCATTAATGTGGA 59 34135818 34135839 GGTGAAAGTTCTCCATCATGAC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230 2 1 3 102 14 34177428 34177446 GACATCTTCACGCAACGAG 59 34176093 34177359 GTTCAGTTGTCACTGTGGC 59 NA Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 1 1 1 60 17 78739913 78739931 TGACATTGAGGACTCCTGG 59 78740513 78740531 GTTGAGGGTCCCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 3 2 2 81 5 120639643 120639661 GTTCTGGCCATCAATTCCA 58 120639704 120642140 CAGCATTCACTTTACTCATGG 57 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600 2 1 2 90 1 81699327 81699586 CTTGACAATCCGGAAAGCC 59 81699640 81700299 ACTTCTTGCTCTTTCTGCG 59 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 1 1 2 80 1 81689174 81689259 TCTGAATGGGTCTCTAGGC 58 81689303 81689321 TGGATCACTATGGAAGGCA 58 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 2 1 2 81 1 81689173 81689259 ATCTGAATGGGTCTCTAGGC 59 81689302 81689321 TGGATCACTATGGAAGGCAC 60 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 1 2 3 80 4 56638595 56638616 GTTTGATATGAATCAAGACGGC 58 56638655 56642823 TCTGGATCATCCAGGTAAGTG 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478 1 1 2 80 10 108639166 108639184 GAGGTACCTTTCCTGGTGG 59 108639228 108639428 ATCCACAAGAAGGACCTGG 59 NA Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 1 1 1 63 1 81751482 81751500 TAACCAGCAGGAGTTCGTC 59 81751788 81751806 GACTTTCAGCTTCCCAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000022596 2 1 2 89 3 120729678 120729864 CAGAATCGCAAGACAGGAG 58 120729916 120729935 GATAATGGTTGAAGGCCTGG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 3 2 3 85 1 87097353 87097372 GTCACCAACCTAAACAATGC 58 87096599 87097305 GTGTTCACGATGTCCTCAG 58 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 1 2 2 80 17 81222922 81222942 GTTGAATACTGCTGAGGACTG 59 81222984 81233695 CAATCTTTAGGCCCTGTGC 59 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725 3 1 2 95 6 96848891 96848910 CTTAAGAAAGAGCCCGATGC 59 96848968 96849571 TTCAGTTTCCGTGTCATCG 58 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 3 2 2 86 20 32124114 32133340 CAGTTCAAGGTTATCCTGCTC 59 32124048 32124066 TCTCCTCAATGCAGTTTGC 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 2 1 1 60 20 3791761 3791780 TTCATTTCCTGTACCTGTCC 57 3791716 3791736 ATAGGTTTCCATGTTGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 2 3 3 80 15 4040901 4041094 CAGCTGTATCAATGATGTGCC 60 4040841 4040859 GGACGGTCATAAGCATCCA 60 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 3 1 1 125 8 81963867 81963886 AAGGTATCCTCATTTGGGAC 57 81968458 81968477 TGCTTGTTCTTCATCTTTGC 57 NA DesignNoJunction Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 1 3 3 80 4 156063902 156064911 GGAAGAACAGGACTTCATCAC 59 156064953 156064971 TGTCGATGACCTGAATCCC 59 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 1 2 2 65 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 3 2 2 80 11 80771223 80772105 CTACAAAGTGCTAAAGGATAACGAG 60 80772141 80772161 ATCTTGTTACTCCATGCACCA 60 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000086335 2 1 2 83 18 6029721 6029739 CTTACCAAGGACCACCTCC 59 6026888 6029677 TAATTAGGATACTGAGGCCCTG 59 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069 1 1 2 121 12 24978531 24978549 CTCTTGCTCAACCTCCTCC 60 24986592 24988345 ATACCAGCTCCTGGATAATAGAC 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182 1 2 3 166 15 35001892 35002421 GAGGAGATTGTTGGTGGTG 58 35002549 35003086 GTGACTGTGATTTCTCTTCCA 58 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 1 2 3 102 9 118843850 118920880 CCAGTACCTACAGGTTCCC 59 118920946 118920964 TTTGATGTAGCTGCCACTG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 3 2 3 80 2 250763783 250765226 TGTCGGATATGACAGGAGG 58 250763721 250763739 AGGAAATCCCACTGAAAGC 58 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140 3 1 3 107 1 231498139 231498158 GTCATTCCTTTCCTGTCCCA 60 231458533 231482703 GAGTTGTTGCCCAATGATGG 60 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 3 2 2 80 4 153927718 153930269 TGGAACACAGAACATTGCG 59 153930312 153930331 TGGTGAGGTGAAGTTCTCAG 59 NA Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 2 1 1 60 15 104191399 104191419 ATGATGCTTACGTTTCACAGG 59 104191357 104191376 CTCTCAGGTCCTCCTTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000088909 3 1 2 80 15 103324863 103324881 TGGACCACATCAGTATCCA 58 103323365 103324155 CCGTGAATACAGCATTTCCT 58 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000060264 2 1 2 118 5 59411357 59413636 CAATTGCTAAGATTGAGGCCT 59 59413716 59413734 CACCTGGGAGATGATGAGG 59 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 1 2 2 84 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939449 198942665 GAATACATCCACCATGTTGGA 58 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109 3 1 2 80 2 198936176 198936194 ACTCTCAGTTCAGGCTTCC 59 198935136 198936134 TTTGTACTGTGCTTGAAAGGC 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000006393 1 1 4 81 7 78559014 78574177 AAGATGAAGGAGAAGGAGGAG 59 78574220 78574238 CTCATCTCCACTGCTAGCC 60 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000046025 3 1 2 186 1 189262340 189262358 GAGCACATATGGACGAGGA 59 189262769 189264569 ATAAACGCCTTTACCACCTC 58 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 1 2 2 80 4 163220741 163220761 GTCTATCTCGCAATCAGAGTG 58 163217926 163220701 TTCTGACTTGAAACGAGTTGG 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910 1 1 2 83 4 28646747 28646765 AACTGTCACCACCCTTACC 59 28637792 28646703 GCAGAATCTTGCAACTTATCAC 58 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000065145 2 1 2 82 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102340958 102344233 TTGGTCAGATAGGTGAGCTC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028249 2 1 7 87 1 83747902 83749336 CTCTGGATTCCTCAGACTACC 59 83749415 83749433 AATGTGGCTATGGTGAAGC 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000090071 2 1 7 80 1 83654922 83654941 CCCACCTTCTATCTGACGG 59 83654988 83655009 GAACTCTTTGTCCTCATAGTCG 59 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984 3 1 2 81 13 67600896 67600917 TTCACGTTAACATTCACATCCC 59 67600169 67600856 CGTGTAAGTCCACTCTTTGTG 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000012201 3 1 2 97 5 126670830 126671168 CAATAAAGACCTTGAGGGCTG 59 126671227 126671245 GATAGGTGTCCCTGGTGAC 59 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506 1 1 2 157 2 85744234 85753809 CAGGGAGGAAAGATACTGCA 59 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026 3 1 3 81 2 199870561 199870579 GACCAGGACCCATGATGTC 60 199868971 199869697 CTGAAGGATTTCATCTTGGCTG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000008074 3 1 5 80 8 6140371 6152369 GTTATTTCGGCAGGAATTAGCT 59 6140312 6140332 GAAGACACTGCATTCTGAGTC 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000087961 2 1 2 90 1 216728558 216728576 AACCATCACCAAGCAAGTG 59 216725506 216726180 ATCTTCATCCAGAGATTCTCCA 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869 2 2 3 81 13 71983311 71983329 AACCAGAAACATGCACTGC 59 71979089 71983269 TTCTGTCTCTTTCAATGGAAGG 58 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 1 2 2 80 14 39750044 39754679 TTTGGAAGCTATGCTTACACG 59 39754721 39754739 AGGAGCAACCTGAACAGAG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000021858 1 1 2 80 1 177154017 177154037 GTCAAGTACATGGCCAATCAG 59 177154078 177166146 CAGGGATTCCTGTTTCAAGG 59 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000065280 2 1 2 82 5 128839323 128839343 GGACTGCTCTCCTACTATACG 59 128796478 128813585 ATCACAGCTCCTCTGAGTC 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651 2 1 2 80 X 10527758 10527776 CATGAATCACCTCCACCTG 58 10526449 10527715 ATGCACATGGTTATTCTGCT 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924 3 1 5 85 9 97989318 98004382 GTTTGCTCAGGGTTCACAC 59 97989251 97989269 AGAAGGCTAAAGACAGCCA 59 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001 3 1 2 83 4 56813516 56814028 AGGAAGATGAAGAGCTCCA 58 56814248 56814266 AATAGGGTGCTATGGGAGG 58 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 3 1 2 81 5 129052071 129052347 TTTACGATTGTGAAGGGTCTC 58 129052390 129052408 GTAAGGAAGAGGTCCAGGG 59 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 2 2 3 80 18 12032958 12032978 TTCCAGAATGTTCTGATGGAG 58 12033019 12033404 TGGTGGTTATACCATCATGG 57 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 3 2 2 80 1 209796978 209797090 TATACTGGAGGATGAAGAAGTGC 60 209797129 209797148 CCTCTCACATACAGCTGAGG 60 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682 1 1 3 87 13 52677859 52677877 AGGAAGGCTGAAGATGAGG 59 52677928 52679429 TCTTCCGCTCTGTCTTCTG 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179 1 1 2 80 5 165933330 165934294 AGTCAGGATTTAGAGTCGGT 58 165934336 165934355 CTCTGCCTTCTTTATGTCCC 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 2 2 2 80 18 15673312 15674181 ACCCAATTGCCAAGATCAC 58 15673250 15673268 GCTGATCAATTCCCACTCC 58 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000051883 2 1 2 80 1 123914248 123959439 GAGAAGATCTAAGAGTCAGTGCT 60 123914190 123914208 AATGCCCAGATGCATTCAC 59 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 1 1 1 60 X 124516612 124516631 CATCCACAAGTTCACCAACG 60 124515503 124515523 CCATTGGTAATGAACTCGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828 1 1 2 108 2 104882268 104885893 AGGTACATCTGTGATGGAGAG 59 104885960 104890346 AATCTGGTCAATCCAATTGCTC 59 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769 2 1 2 80 10 55585297 55585315 ATGATGTTGCTCGGGAGTC 60 55584440 55585255 TAGAGAAATTCAGCCTGGGTC 60 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062052 1 1 5 81 2 1506288 1506306 TCCTTCTGCTGATGGAGAG 59 1501707 1506243 CACGCCTGACTTAACAACC 59 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 2 2 2 81 1 199019942 199026207 CATCATTGGCAGAGGAGTG 58 199026250 199026270 CATGATCTTCACTGCAAACTC 58 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959 2 1 3 148 1 32573327 32573345 GGAGAAGATCACGCATACC 58 32574330 32576093 CGACAAATACTCTTTCTGACGA 59 NA InUTR Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765 3 1 2 83 4 115729480 115731510 GGAATGAGGGCTTTGAGTG 59 115731557 115731575 TCTCATGGTCCTTGACCAC 59 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 3 2 2 122 7 142459198 142459216 TCATGGACCTCTGCTTCTC 59 142459302 142461326 ACATCTTCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 2 2 2 80 10 104539215 104539922 GAGCTTAAGAAAGCGGAAGAG 59 104539964 104539982 CACGGTGTAGCTGTAAGTG 58 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477 2 1 2 80 14 67165738 67166932 CAGAGTTCTTCAGCTCATGGA 60 67165678 67165701 AGTCTTTCTAGCTCCTTAAGATCC 60 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 1 2 2 80 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314806 105314825 CAGAGAAGATGACGAACCCA 60 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337 2 1 2 81 X 29476583 29476604 GTAAATGAAGCAGAGGATTTGG 58 29476646 29485389 AACCCACATCTTTGTGCTC 58 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 1 3 3 80 5 122132555 122132575 GAACATTGCGACATCTTTCAG 58 122132615 122132726 TGCTAACACCATGTCAATCAC 59 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278 1 1 3 80 5 121953216 122019314 TGGATATGCTTTGATGTGGA 57 122019357 122019375 CAGTCCTGAAGAAGAGCTG 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 3 2 2 104 7 12621668 12623745 ACGTAGAGAAGTCTGGTGC 59 12623813 12623831 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174 2 1 2 81 8 22294801 22297328 GACTGCACAGTGTACAAGG 59 22297372 22297391 GGATGACAACAGACTTCCAC 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 1 5 5 80 13 55062935 55064383 GCAGCTTTGAGCAATACCA 59 55062873 55062892 TTGCTTTCTTCACTTGTCCA 58 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 2 2 5 83 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114410 55114429 TATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 1 1 1 113 18 25370439 25370458 CATCAGTAAATGCCATGGGA 58 25369987 25370007 CATAGGAACATGTTGTGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011 1 1 2 80 18 24874141 24874160 CCAATGCCATCAAACAAGGA 59 24874201 24874534 TTTAAGAATACCAGGCCTGGA 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 1 2 2 80 20 25064982 25120704 TCATCGTGTCAGCTTTGGA 59 25064920 25064938 TCACTGTTTGCACTACAGC 58 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006 2 1 2 84 1 87203127 87206386 TGGTATCACTGAGAACACCA 58 87202126 87202144 AGAATCCTGCTTTCTGGGA 58 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 3 2 2 80 18 24759521 24760503 TTGAGAAGGAAGAGGACCTG 59 24759460 24759480 CAGCATTACTCTTCACTGTGG 59 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 2 2 3 80 X 70974260 70974279 TTGTCCAGTCAACTCCATCC 60 70973770 70974220 GTTAGTAGTACAGCAAGCAGTG 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000064743 3 1 2 80 2 3780620 3809223 GGGATGTGTTTCAGACCCA 60 3809265 3809285 TGATGCTGACTATTCCTCTCC 59 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584 2 1 2 81 2 124205976 124340800 TAGACAAGATCATAGCAGTCTG 57 124340840 124340860 CTCTTCATAATGCAGTCAGCT 58 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 3 2 3 80 17 9838224 9838350 CAATTGTCTGTTATGACCTCAC 58 9838391 9838409 CTTCTAAACTGCGGAGCTC 58 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713 2 1 2 103 9 15695793 15695811 CTCCATCTGCCTGAAGGAG 60 15694253 15695727 CTCCTTCCTCCTGTTTGAGG 60 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000010466 2 1 2 81 10 104625562 104625580 CTGGACACTGTGGAGTCTG 60 104625365 104625521 GAGCTTCTTTAAAGATCCTCCTG 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 1 2 2 80 10 88505106 88505127 AGAAGACTGTACAAATGCAGTG 59 88500562 88505066 GTGTCCATGTAACACTGAGC 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511 1 1 2 84 7 126767983 126768003 CATGTGCTTCAGAAGAAAGAG 57 126769143 126769234 GCTGCAAATACTGAAGAAGG 57 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619 3 1 2 115 9 79523411 79530240 TGTGTCAGTGGTAACAATCC 58 79523315 79523333 CTGTCATCATCTGCCTCTG 58 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000076225 3 1 3 82 1 48051106 48051126 TTAAGCAGAACATCCATAGCC 58 48051170 48052272 GAAACGCAGTTCCTTCCAG 59 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 3 1 2 60 18 17556861 17556880 CCTAAACCTGGAAGTGACTC 58 17606017 17606036 CAAGCCTCTTCTGAAGACTG 58 NA DesignNoJunction Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000081291 2 1 3 81 1 198311157 198311180 GAAGAAGATACTATTCCAAGAGGC 59 198310958 198311119 CATGTAAGGTTCTGCTTCCTC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304 1 2 3 80 1 198304450 198307535 CCAAGAGCCTCAAATCAAAGG 60 198304390 198304408 CCTTGTATTGCCGTGTCTG 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027593 2 1 3 80 10 15461981 15463368 TCACATCAGCAGGAATGTC 58 15461919 15461937 CTGCTCTGAAACCATAGCT 57 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000019358 1 1 2 80 1 57753898 57753917 ACCCTACTCCTCATTTAGCA 58 57753956 57755154 CTGTCACTATAGTACCTACTGTC 57 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 3 2 2 80 9 16869175 16869193 TCCGAGTTCCATCTCTTCC 59 16869237 16871956 CACCGACATGATCAACTGG 59 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000011070 2 1 2 121 7 130250588 130250607 ACATCAGTGAAGTCATCCGA 59 130251952 130252896 GTACTCAGAGAAGGCCAGG 59 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 3 2 2 80 2 1446266 1446782 AACTTCAGTGGCTTCTAGACC 60 1446821 1446842 CAATGAGCGTGAGAATATGTGG 60 NA Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 1 1 1 85 18 27658070 27658088 CGCTTTCAATCCTCAAGGG 59 27658807 27658827 CGTTATTCAGAGCGATGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000004881 3 1 2 88 13 60595514 60595534 AATGGCCATTGTATCTGACAG 59 60595584 60596663 TATCCATGGGTTCCTCCTC 58 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 3 2 2 96 9 16303758 16304242 CCTCGATCTTATTGGAGACCC 60 16304379 16304397 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000080340 2 1 2 84 5 147133881 147133900 CTTTCCTGGCTTAGAGGGAG 60 147131973 147133335 AGCAGGGTGATAGAAAGGG 59 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 2 2 2 81 7 14239211 14239229 TCTCATCCTCTGAGTCGGA 59 14230518 14239166 GACTTGGGAGCCATCTCTG 60 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 1 2 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11073740 11075498 GTCAACTCCATGATGTACTCC 58 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543 2 1 2 110 5 134706538 134708483 GAATAGACCAGAGATGGGCA 59 134708556 134708574 TCAAACTTCCCTGGCAGAG 60 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 2 2 2 80 18 27097239 27097258 ATCATTGAAAGTGGAGGTGG 58 27097299 27098769 TCTTAGGATTTGTCTGTGGTC 58 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 1 1 2 80 7 117000764 117001093 GAATGAACTGGGATGCTGTG 59 117001136 117001154 CATTTGTCAACCCATGGCT 59 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 1 2 2 80 4 9676047 9678433 CAGTTCAAGCTAAACATCGGG 60 9678473 9678493 GCCAGCATCATGTGAATACTG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134206577 134206596 ACCCTGACTATGTGAAGGTG 59 134205120 134205845 AACCATAACCAATCCAGGGAG 60 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000089310 1 1 2 89 17 15782621 15782642 CACATTCATCATAACAGGACGA 59 15784433 15785054 GCCTGAATGACCTGAATCC 58 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000080335 3 1 3 81 13 56607262 56607280 GATCCAGGGTTCAGATGCA 60 56610493 56612912 TACCTTCTCCTTCTCTTCCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000086685 2 1 18 98 1 43454950 43507138 GGAAGTTACCTCAGATACACCA 59 43507197 43507215 AAAGGGCAGTGTACTGGTC 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 3 2 2 89 10 53575897 53575915 CCTGAATGAGGAAGAAGGC 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 1 2 2 80 6 108652197 108652427 TGTCCATTCATGAGCTTGGT 60 108652136 108652154 TCTGTCTGTTGGAGGTCAC 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195 1 1 2 187 9 17206856 17206874 AGTATCGGAACTGTTCGGC 60 17204707 17206705 TTCCATCTTCAGCCTCTGG 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000084765 3 1 2 82 11 7413951 7413970 AAATCATTTGACGCACACGA 59 7416235 7417631 TGGGTTGTATAGAAGCTGGAG 59 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 3 2 2 140 X 15348426 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451891 TAAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000026920 1 1 2 84 9 17819195 17819386 TAATGCTTCTGATGCCCTG 58 17819434 17819452 AATCTTCAGCTCTTTCCCG 58 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000086349 2 1 2 102 1 174440200 174440222 TTATGTCCAAACACCTTCCA 57 174440117 174440135 CATTCCAGGCTTCTGAGAC 58 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331 2 1 4 80 13 70240799 70240819 TGGCAACAAACATGAAGTCTG 60 70240861 70245797 AGGTAGGACACCTCTTCCA 59 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000084825 3 1 3 267 2 124149565 124149583 GTTGTTCTCGGCTTTGCTC 60 124134789 124138858 GCTGTGTCTCCAATATCTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437 3 1 3 83 2 124145914 124145932 CTCTGTGGTTGGGAGAAGG 60 124141465 124145869 TAACATCAAATACGGCACCTG 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000038172 2 1 2 80 7 114159083 114166355 ATCCATCACAAGGATCTAGGAC 59 114154860 114154881 CTCCAGAGTACTTGAAGTTCAG 58 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 2 2 2 80 3 123780904 123782334 GTGACCAGGATCGATTACG 58 123782378 123782396 GCTGGAGCGTATTGAAGAG 58 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000016946 1 1 2 83 2 127688689 127688708 AAAGCTGGAATGGTACAGAG 58 127688751 127688848 ATTATAGAGCTCCAAGACAGAG 57 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841 3 1 2 90 1 28567844 28569651 TCTATTGGGTACTCCATCCG 58 28572307 28572325 TTGTCTCAACCCTCTCCTC 58 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000017740 1 1 2 80 5 150725758 150728271 CTTCTACAGTGAGGTGAAGCA 60 150728309 150728331 GGACGAGTCAATCTTTCAATCTG 60 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 3 2 2 99 8 22992733 22992751 TTTCTCTTCCCTACGAGCG 59 22992569 22992670 AACAGACAGTGGTTCCCTG 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000035522 1 1 2 82 4 165457994 165458012 TAAGTCTCCAGGGTTGCAG 59 165457314 165457948 ATTCGGAGTGAGCTCTGTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000042790 2 1 6 80 9 17350294 17350312 GTTCGAGGAAAGGGAAAGG 58 17350356 17353788 CCTTGGCTTGTCACATACG 59 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 3 2 2 101 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914339 143914357 CTTAAGGCCACAACTTCCA 58 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000081465 2 1 2 88 1 91904994 91905012 AAACAACGTCGTTGTCGTC 59 91906624 91906646 GGTTGTACATTGTTGGGTTCC 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713 1 1 2 80 13 69766153 69766172 CCATAGTGGAGTCAGATTCC 57 69765630 69766113 GAGAAATATTCTGAGGGTCTGG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 2 3 5 98 20 5416878 5416898 TTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 3 3 5 99 20 5416877 5416898 ATTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 3 2 3 81 12 41202605 41205271 GATGTCCTAGGTCATGTTAGC 58 41205314 41205332 CCAGGGAGATACATTCGGA 58 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683 1 1 2 80 9 100932613 100934934 CACTATCTGGACAGCATTGAG 59 100934975 100934994 TGTTCTCTGGTCTAGCTCTC 58 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000071916 3 1 2 80 1 79982863 79982886 GAGGTCTTAGAATATTGTCCTCCT 59 79983169 79983195 AGGAGAGGAAGGAAGAGCT 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 1 3 3 80 13 71132315 71132333 GCAAAGCTAGTCACCAAGG 59 71132375 71136853 GAAATCGATATTCACCTCCCG 59 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817 3 1 2 83 4 7301399 7303968 GTACAGAGGTCTATGGCCAG 59 7301053 7301071 GTACTCAAAGACTCGGGCT 59 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 1 2 2 80 3 61449557 61464037 CAGGACAAGAGATTCGTCAG 58 61449496 61449515 GAGGAGGACCCTGATTAGAG 58 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935 3 1 2 81 3 122141385 122141403 GCTCAACTTCTTCCACACG 59 122148176 122150138 GTGTCCTGGATCAAAGACTG 58 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 2 2 2 83 8 19888889 19890687 TGTCCTTCTCCAGATTGGG 59 19890734 19890752 ATCAGATGCTTCCTTCCCA 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139 3 1 2 95 2 148609966 148652036 TGATGAAGACAGTGCATCTG 58 148652722 148652741 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 1 2 3 82 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 3 3 3 80 11 20495267 20501671 CATCTCTTGGTTCAGGAATGG 59 20501711 20501731 ACCGTGAGCTCTGTATTACTG 60 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126 3 1 2 80 2 263940374 263940393 AACCAGATCTTGGATCCCTG 59 263940435 263978823 CAGGTTGTTCATCATCTGGC 59 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 1 2 2 83 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 3 2 2 84 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537950 19537968 GATGAGGAACTGTTTGGCA 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000008298 1 1 3 92 10 74537199 74568352 TGAAGGCAGTGGAAGACTG 60 74568408 74568426 CCTGTACATGCAGTCTCCC 60 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 2 2 3 80 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504497 12524951 TCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188 2 1 2 86 16 54028885 54028905 ACAACCTTGATAGATGTCACC 58 54028953 54040546 GTTCTTGTAGTTCCAGCCT 57 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000091460 1 1 3 80 12 41361454 41361472 AAAGAAGCAAAGGAGTGGC 59 41361515 41363035 TACTACTGGTACTTTCGGCT 58 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000082037 2 1 2 81 5 153685041 153685060 GGAGACATTCTCCTTCTCGG 60 153684635 153684997 TTTCCCATCTGCATCCGAG 60 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000084413 1 1 3 86 8 111064464 111066160 GTATCTTCGTGCTCGATGC 59 111064396 111064414 AATGTGGTGAGACCTCAGC 60 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 3 1 1 60 1 215705950 215705968 GACTACAAAGTGGCCTACG 58 215709099 215709119 AAAGATCTGGGAAAGTGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191 2 1 2 80 7 66611196 66617030 ACTCTGGACTTCTCAAAGATGG 60 66617069 66617089 TCGGCAACAGTATGTAATCCA 60 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000012354 1 1 2 80 3 21627216 21628518 ACCATGTGATTCTGGAGGAG 59 21627155 21627173 TGCTAATAGACACTGGGCG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024187 1 1 7 88 19 15119200 15119220 TGATGAGATTTGTACCACCTG 58 15119267 15119475 TGGTATACCCATATAGGAAGCA 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000020775 1 1 7 88 19 15144938 15144957 TGAGGAATGTGACTCCACAC 60 15146901 15146928 GGAATGTTCTTCTGTTAGAAGGTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000085762 2 1 7 81 19 15192670 15192689 GGTTATCTTCAGATTGGCCC 58 15192742 15192764 TAGCTGTAAGGCCAGTACAG 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180 1 1 2 80 11 27053302 27053322 GAGCACCTTTCTACGTTTGTC 60 27052462 27053262 ACCTGAAGACTCTCGTTATCC 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180 2 1 2 80 11 27041184 27041577 TTACCACATGCTCTACAAACTG 59 27041125 27041145 TCCTCTTCATCTCCATAGGAC 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000039904,ENSRNOT00000036642 2 3 4 81 8 124933683 124936107 CATACCAGGTCCAGAGCAC 60 124892696 124892714 ATGGTGGGTGTGATCACAG 60 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 1 4 4 80 14 79425691 79425712 TCCATATCATGACATGTTGCAC 59 79425752 79426425 GACATGCCCTGAACATAACC 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 3 2 2 92 10 36590566 36590584 AAGGTGATCTCCCTGTTGC 60 36590639 36598163 ATGACTGCACTTCAATCCGA 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 3 2 6 81 1 41928758 41928778 TTCCAGAGACCTTAAACAGCA 59 41928252 41928718 TCTTGCATATTGCTTGACTTCC 59 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000056430 3 1 2 87 9 111669065 111690163 CAGAGATACCAGGAAAGAAAGGA 60 111690204 111690228 CCGACTTTGGAGACTTAATTATTCC 60 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 2 2 2 80 6 104322442 104323479 AATGCTACATAAGGCTCCAG 58 104323522 104323540 TTTCTGATTCGATTCCGCT 57 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 2 2 2 81 3 119061199 119061219 TCCATTAAGCTGTGGTTTGTG 59 119058768 119061156 TAGCCATGTCTGTACCGTG 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000091264 2 1 2 80 6 26546034 26546052 TTCACGTGAATGGAGTCCT 59 26545123 26545990 CATACTCCTTCCGAAGCTG 58 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 3 2 2 80 8 54973649 54973667 TGATGGGAGAAGCCTAGAC 58 54969924 54973607 TTTGCCTTATAGACCTGATCG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000050073 3 1 5 180 11 27876655 27918030 CCTCATCAAAGAGGCAAGG 58 27868032 27873992 AATCCCAATCTTCTTCCACAC 58 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000091652 2 1 4 83 14 80054837 80056440 CGCGAGAGTATAAGATTTATCCC 59 80054776 80054794 TCCGGTCTACATCTTTGGG 59 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000051612 3 1 2 80 8 91384943 91387864 AAGGCTGATAAAGAGTCACCA 59 91387905 91387924 ACTGCTACTAGGTGTCTCAC 59 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000065373 1 1 2 80 10 91268536 91272773 CATCATGAACTACCAGGTGTG 59 91272814 91272833 ATGTTGCTGTCTTCATTCCG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000066222 2 1 2 106 8 58378638 58378658 GGTGGAAGTATACTCTCCTGG 59 58378726 58384065 TAAGAACGTCACTCCCTGG 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000065171 3 1 2 81 9 104864052 104868810 GGCACAGTAACAGATGAAGAG 59 104863991 104864012 ATTTGTGCGGTATTACAGTTCG 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809 1 1 2 98 1 226850567 226853446 CAAAGAAGATTCCCAGAGGC 59 226850279 226850297 ACGTGCAACTCTTCAAGTC 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000011552 1 1 2 80 12 42490059 42490078 AATGGATGTCCAAAGTCGTC 58 42489112 42490016 AGGCCAAAGTAAATCCGTG 58 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 3 2 2 94 5 12143594 12143612 CTGGAGTCCAGAAAGACCA 59 12141199 12143538 AATCTGTGTCAACTGATCCTC 58 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 2 2 2 122 7 117777670 117777880 GTTTGCAGGAAGCATACAC 57 117777965 117777984 AATACAAGTTCTGGCTACCG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020 3 1 2 111 1 186068024 186068045 CCTGGAATAACATACAAGCCAG 59 186077722 186106485 CATAGAGCTGCTGAAGCTG 58 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 1 3 3 122 5 2051973 2054773 CACAATGGATGGAGAGGAG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000084302 1 1 2 81 2 207420796 207473265 TTTGCTAAAGCTGCGATCG 59 207473308 207473328 CTTCTGTGAGTTTCTGACAGC 59 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 3 2 2 85 10 87328981 87329889 TCGACTCCTCTAAAGACCCA 60 87328915 87328933 CTGGGATGAGACCACTTCG 60 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 3 2 2 80 8 116829975 116833487 GGTCCATCCTCAGAGACAG 59 116829913 116829933 GAGATAGCGTATAGAGCGGAG 60 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034 3 1 2 113 9 27642213 27642231 GAGAAGTCGGTCTCCATCG 60 27630486 27639494 CTTAAAGCTCAGCTTCTGACTG 59 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 2 1 2 86 6 7964957 7964976 TCTGAAAGTGACAACAGCCT 60 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000078559 3 1 2 81 19 60351935 60358396 CAGCAGGATAATGGGTAAATGC 60 60358434 60358456 CCTGTCATCTTCAATCATGACAG 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623 1 1 2 84 19 60351882 60351900 CTCTACAGTGGGATCGAGG 59 60351948 60358397 GGCATTTACCTGACTCACC 58 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527 3 1 2 80 2 143674642 143680507 CATGACTGTCTATAGACCTGC 58 143680546 143680567 GTTTCACCTTCTTTAATCAGCC 58 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 3 2 2 82 14 1463933 1464560 CTTCGAGAATGAAGGTGCC 59 1464605 1464624 AATAACAGCACAGGAAGTGG 58 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000031855 2 1 2 81 5 155966639 155968392 AATGAAGGGCAGTGATGGA 59 155968435 155968455 CTCATCTAGTTGCTCAAGAGC 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 1 2 2 80 1 89186887 89187604 GGCATCAATGGATTTGGAC 57 89186825 89186843 ATTCACTGCTACTACCCGA 58 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014207 3 1 3 193 4 147692044 147692069 CTCCTCCTAGGTTCATGGC 59 147692775 147692794 CACTTGGTACTCCTTCACCT 59 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596 2 1 2 81 X 157362155 157362174 AGCAACTACAGTTCATGGAC 58 157362216 157362691 TCCTTCAGGCTAGAACTACTG 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 1 3 3 86 12 37880291 37881536 GATAACAGACATCATCGACATCG 60 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 140 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000066777 3 1 2 116 3 2030858 2036894 CGTGCTGCAAAGAGTTCTG 60 2030760 2030778 CTTCTTTCTGCTTCTCCGC 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 2 2 2 83 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824942 43824960 TCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000092063 1 1 2 80 1 251253692 251255249 AAATTAGGCAGTTCCGACC 58 251253630 251253648 ATCAGTGTCCAGTCCATCC 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000066114 2 1 2 96 3 119699288 119718061 TTGCAGAGCTGGATACAGAG 60 119718119 119718138 AGAACCTCAGAACCACTGAC 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834 1 1 2 85 3 119712145 119712163 CACCTTTACCAGTACCGAG 57 119712445 119718066 CTGTACTCTGTATCCAGCTG 57 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000016828 3 1 2 81 9 38734432 38744494 GATGACGCACAATGTGGAC 60 38744539 38744557 AGTTAGGATTCGCTGGCTC 60 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 1 2 2 80 7 136611968 136658189 CTCGTGTACGGAACATGAC 58 136611906 136611924 CCTCCAACGGTGTTAAAGC 59 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 89 10 109900902 109903324 AACTGAAAGTGGTCGGGAG 60 109903377 109903395 CTTTGAGCCGCAGTTTCTC 60 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000049624 1 1 2 80 19 22281736 22281754 GGGAAGAGGGACTCATGTC 59 22179573 22281692 CATAAACTGAGCCTGAGCG 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 3 3 3 80 2 27025435 27025454 GGCTATCATGGGAGTTTCTC 58 27025497 27028429 TGAGGAATGGTTTGCACTG 58 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 2 2 3 82 2 27003597 27003617 CTGATGAGGACAAGTGTTCAC 59 27003657 27006172 TTCATATTCCTCCTGAAGGTCTG 60 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 2 1 2 80 13 73027911 73056638 AGTACATCCAGTATGAGGCA 58 72984025 73027870 CCTCATCTGTAACTTCCACAG 58 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000024751 1 1 2 189 1 205911559 205911827 AAGAAATCGTGCCACTCCT 59 205911979 205922917 GCGTAGCCTGTGTAAATGAC 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932 2 2 3 80 8 128225404 128228776 CATTTCAGGCCTGAAGACC 59 128225342 128225361 AAGACAGTGAGGACCATCAC 60 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894 3 1 2 81 14 64739601 64739622 TGTCATATTCAGACCAAACGTG 59 64739663 64739683 GGTGGACAGTATTGGGAGAG 60 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 3 2 2 80 10 89474512 89474769 ATTGAAAGCATCTCCTGATTCC 59 89474809 89474828 TCTTCCTCCGTTTCTTCGAC 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 2 1 2 80 10 13808311 13808336 CTTGTCCAACCTGACATATCTG 59 13809293 13809312 CCTGTAGTCACAGGTGAGAG 59 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 2 2 2 80 3 148714526 148717235 AGTACAAGCTGTATAGGCAC 57 148714465 148714484 GGTGAAACATCTTGTCACAG 57 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888 3 1 2 80 19 19298877 19310520 ACATCGTACCGAATAGCGT 59 19298815 19298834 AACCTTTGTCACCTACACCT 59 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639 2 1 2 80 2 27311204 27311222 AAGGAGCTGCTAAGGACAG 59 27308956 27311158 AGACATCCGAATAGCCGTC 59 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043 3 1 2 80 5 73937563 73941042 CCAAATATGGAAGATGAAGATCCTG 60 73937507 73937526 GTGACTGTGGTAAACAGCAG 59 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879 2 1 2 82 10 89986718 89986737 GCCTCTTACACCTACAAGGA 59 89986782 89987412 GGAGACCAGGAGAAGTCAG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 2 4 4 88 13 91220523 91222367 CATCACTGTCCAAGGTTCAG 59 91220454 91220472 CAAACAGGAGGCACATCAC 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 2 1 2 83 19 19782085 19782106 GTTACCACATACAGAGATTGGA 58 19781920 19782042 GGTAACACCATTTCCATTGC 58 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 1 1 1 134 1 100811778 100811796 GTTGAAGAGTCGGTGTGAG 58 100824885 100824905 CCTCCAAAGTTAAACCCACTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt15 ENSRNOG00000014099 ENSRNOT00000019037 3 1 1 80 10 88048912 88048930 CTGGAGATGCAGATTGAGC 58 88048543 88048870 GCTGAACTCTTTCATCTCCTC 59 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 1 1 1 80 9 37753779 37755286 ATGGACTTTAAAGTGAGTGGAC 58 37755326 37755345 CAACTCATCTGATTGCACCA 59 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 3 1 1 80 9 37750223 37750241 GACGTCCAAGATTCGTCAC 59 37753002 37753670 GGACGATCTACTTCTTACTTGTG 59 NA Rattus norvegicus 81 Gdf2 ENSRNOG00000057751 ENSRNOT00000085255 2 1 1 80 16 10267901 10267920 ACAACAGATACACTACGGAC 57 10267962 10271055 TCGATATAGCATCTTCCACG 57 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 3 2 2 80 13 91171736 91195955 GAAGTGATTTCTGACTGGCT 58 91171675 91171694 ATGGCACCTTAATGTGATGG 58 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 1 2 2 80 5 62164778 62165735 ATGATTACAAGGTGATGGTGTG 59 62164719 62164738 GGTGACAGTTGATTGTCCTC 59 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 1 2 2 80 1 68471482 68471504 CTGACCTCATCTATAATCTCCTG 58 68471541 68477656 GCAATTTATGTACTCTGGTCAC 58 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244 2 1 2 107 2 166423453 166423473 CCAGAAGACATCTGAAATGGA 58 166423541 166424766 CAGTTTGGCAAATCAAACCC 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859 3 1 3 90 1 217617545 217618977 AGTCCCAGCAAGACTATGC 60 217613779 217613798 ACTTCTTCAAAGGTGGATGC 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 2 2 2 89 20 47253680 47253702 CTTCAAGCTGAAGGAATCTACTG 59 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000042331 1 1 3 146 12 43462061 43462079 GAGTGCATCCTTAACAGGG 58 43457312 43459914 AAGTTTATGGCACCTGGAG 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223 3 1 2 82 8 32545795 32545905 AGACCAGGCTTTCTGTAAGG 60 32545945 32546701 GAACCACATAGTCAGTTCTTACTC 59 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919 2 1 2 116 2 116374162 116374582 ATACTCAAACACAGGGTCTC 57 116370565 116370583 AGTAGTTCCTTGGTCAAGC 57 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000033489 1 1 3 81 14 10879809 10879827 TTGAGGAGGATTCTCGTGG 59 10879871 10884522 TCCTCTTTAATGCGCTTCTC 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979 3 1 3 81 20 5162792 5162917 GATCAACAAGCACTTCCTCG 59 5162730 5162748 CTCACTCTTGAAGGCCTCC 60 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001135 2 1 3 95 20 5162965 5163140 CAAGGATTTGCAGGGAGGA 60 5162782 5162801 TTGGGATCATCGAGGAAGTG 60 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 1 2 2 80 5 76409312 76409330 TGCCAGCATATGAAGTTGC 59 76409369 76410044 CAGTTAATGTGTCTGGAATGACTC 60 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 3 2 2 80 12 51852895 51853586 GAGGACTGTCTTATCAAGATCAC 59 51852837 51852857 ACCACATAGAGTCCTCATCAG 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866 2 1 2 142 9 45546505 45556980 AGGAAGGATCATCGGATGG 59 45538299 45546399 CACTATACCCATCCGGGTC 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 1 2 2 80 8 118830265 118834405 CAAGGATCTTCCTTCGAACAC 59 118834446 118834465 TTCACCCGAGCTTTAAACTC 58 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000056170 3 1 2 91 5 150865469 150865487 ACTCAGTACCAGACACTGC 59 150865542 150880364 GTGCTTGAAGCGAAAGGAG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 1 1 1 60 2 36011081 36011101 TTCTCCATCATGCTTCATTCG 59 36011770 36011788 TAGGCCACCAAACTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 3 2 2 80 20 50177664 50194468 GAACAGACAAAGGCTTTCG 57 50194509 50194530 GTATAGACCTCTGATTGGACAC 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000090001 1 1 2 83 7 70770617 70770637 GAATATCAAAGGGTCCGAGAG 58 70773492 70773625 TTCTTTGGAGAGTCTGATGTC 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000090001 3 1 2 84 7 70770616 70770635 GGAATATCAAAGGGTCCGAG 58 70773492 70773625 TTCTTTGGAGAGTCTGATGTC 58 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256 1 1 2 80 12 50288798 50290136 TTATTCAGTACCACAGCAGC 58 50288737 50288755 TAGTCTCATCTCTGGGCAG 58 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000022861 1 1 2 80 3 157040376 157049630 AGAAGAAAGAGAAGCAGTTGTC 59 157040317 157040337 TGTAGTCAAAGTTAACGGAGG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000065342 2 1 2 80 1 193202357 193202383 CACTCACTCTTTAACTATCCTGC 59 193202423 193202441 TACAGATCCAGGTGCAAGG 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000082355,ENSRNOT00000013991 2 2 7 81 16 64025228 64036326 TCAAGATACTTGTGCAAGTGC 59 64036367 64036387 CTTGGGTTTGGACTTTCATGG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014147,ENSRNOT00000038549 2 2 7 105 16 64025208 64025226 TGAAGGACCTGTCAAACCC 60 64036978 64048152 TCCTCCGCTTTGTAGAAGC 60 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000081574 3 1 3 114 8 26432873 26434072 TCAACCGAAGAACCTTGAG 57 26434149 26447685 TCCAGATTCACCTACTACCA 57 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939 1 1 2 82 1 46169894 46169917 CAGTAACTTTCAGCAGAGTAACTC 60 46169956 46182857 TTCTGGAGTAGTTACCTTGGG 59 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000085698 1 1 2 80 5 75211366 75211384 GCAGAAGAAAGCATAGTGC 57 75210178 75211322 TTCGTGAAAGACCTGACTG 57 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805 3 1 2 85 20 54269467 54517313 ACATGTGTTAAGATTCGGTGG 59 54269402 54269421 TCACAGCAAATCTGAATGCA 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202 3 1 2 84 12 51312310 51313643 TACTGCAGAACAATTCTGCA 58 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 2 2 2 87 8 128616390 128616856 ACTCAAGGCTGAACAAGGA 59 128616321 128616339 ATGTTGAACACCTCCAGCT 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025689 3 1 3 100 2 210725771 210725790 AGAGATACACCATGGGAGAC 58 210724971 210725276 AATTAAGTAGGGCAGATTGGG 58 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 3 2 3 102 2 210782372 210782390 ACAAGAAGTACAGCATGGG 58 210724972 210781987 ATTAAGTAGGGCAGATTGGG 57 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809 2 2 5 102 20 4817164 4818499 GTGCTTAGCTCTTCTGTCG 58 4817080 4817098 TGAGTTAGGTGTCCCAGAG 58 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000014924 1 1 2 108 16 59197682 59219557 GATCCTAACACAAATTGAAGCC 58 59222870 59222891 CGCAATATCAATAGGAAACAGG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000008785 1 1 2 94 7 97967524 97976921 CAGCAGCTGCTATTGTGAG 59 97967448 97967466 TGAAGACAGCGTAGCACTC 60 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161 3 1 3 159 8 120387456 120387474 TGCGATATACAACCCTCCC 59 120386557 120387333 CTGGACAGACTGAGTGACC 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463 1 1 3 80 9 51524009 51536198 ATTGGATGAGATGCAGGAGG 60 51536241 51536259 CTGCTGTCTAATGGGTCGA 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000065212 1 1 3 87 9 51509555 51509922 CAGATGCTGGATCCAAGAC 58 51509973 51509991 TTGAGTTGTTCTCAACCGG 58 NA Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 2 2 2 81 8 32211454 32213615 GCTTATCCACTCAGGAATTAAACC 60 32213653 32213673 ATGCATCTTTAGCGAGTAAGC 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000081376 3 1 2 87 3 5817516 5817536 AAGCAGTTAGACACTACACTC 58 5816034 5817467 GTGTGAACACTGGAGATCG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 3 2 2 80 9 53704937 53706129 GGAAGAAGATAAGACGATGTTGG 59 53706168 53706187 TGTACCAGGTCGATAGTTGC 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000083387 2 1 2 80 9 1631892 1635615 GTACAGTTGAACAAAGGCGA 59 1635658 1635676 TTGGAGGTCAGTTAGAGCC 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 3 3 3 80 10 82234806 82236146 TGTACCAGATGTGTTTGCAG 59 82234745 82234766 CTAGAAGACTTCTTAGCCACAG 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000080649 2 1 5 109 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420459 4420662 TTCCGTAGCTGAGACTTCTG 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50622543 50622562 GGACTCAGCTAATGAATGGG 58 50622603 50623897 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 3 2 2 80 2 30536867 30536887 CCACTATGAAACCGACTACAC 59 30534400 30536827 ATAGGTGGATATTCCCTGAGC 59 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000060673 1 1 2 81 2 45230079 45230103 GAGGATTTCCGGATTACTATTTCAC 60 45230140 45240918 ATGAGAAGGCTGTATTTGCAC 59 NA InUTR Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452 1 1 2 81 2 44339292 44339310 ACTCTAATTGGAGGAGGCC 59 44337785 44339247 GAGTCAATCGGCTGTTTGG 59 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000014152 3 1 2 155 1 131454191 131454209 CAAGAGCTTCTTCAAGCGC 60 131452451 131454072 CTCTGTACAGCTTCCCGTC 60 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000077964 2 1 2 92 1 73727926 73727944 GAAACTGCTCAAGGAGGTG 59 73727628 73727870 CAAGATTGTCCAGGCAGAG 58 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 2 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000038084 3 1 2 80 8 21454253 21454273 CTGGATCCAATTCAGAGAACC 59 21453176 21454211 TAGCTGACCTCCTACTGTG 58 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997 2 1 2 80 3 2717671 2717689 TCATCTGCCTGACCAAGAC 59 2716621 2717629 TTGGATCCAGTAACCAGTCAG 60 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 1 2 2 80 16 72031969 72042195 AACTTGCTCGGGAAATATGTG 59 72042234 72042255 GTTGCCAAATCTATCGTTTCTG 58 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884 2 1 2 80 5 159530831 159531085 TCTACACCAACGGACTGAG 59 159531129 159531147 CCACAAAGTTGAAGGCGAC 60 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000064905 1 1 2 98 20 47656120 47663586 TGTCACAGTCTCTGCTTCC 59 47663648 47663666 CACAGTTTGGTCAGGAAGC 59 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 3 2 2 83 8 62407326 62407345 GTTTGGTGGACTATCTTCGA 57 62407162 62407281 CTTCACAGACGTCTAGTGAG 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 3 3 3 80 20 48564867 48564887 TTGTCTTTGTGGATGAGAACC 59 48564929 48570168 CAGGGATATCCCATTCCCA 58 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000087718 3 1 2 94 20 47557149 47557167 GTGGTGGCTTTACATTGCA 59 47557224 47558616 TCAGCTCTACCTCTTCTGTG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000026418 3 1 2 80 16 74338780 74344506 CATCCTAACCAAGGAGGACC 60 74338719 74338740 ACGTTTATTGCTATAGTGGCAG 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 3 2 2 80 8 132495520 132495538 CATGGGCTTCTACATGGCT 60 132495582 132504653 TGGTGTGAGGCAATCTCTG 60 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 2 2 2 80 3 161805477 161805496 ATTGACACCATGTTCCACCT 60 161803061 161805437 CAAATGGAGACCTTCGAATACG 60 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 2 3 4 84 3 56886775 56886879 TCAGAACACAGTCACTATTCC 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 1 2 2 80 5 105385354 105385374 AGATTGCCAAGAAGAAATGCC 60 105381455 105385312 TTTCTGCGGCATAATCCAC 59 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 2 2 2 80 5 105427808 105427827 TCCACAACAGTCTCATGAGG 60 105402760 105427767 ATGATCCAAGTTCTTCAGCGA 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 3 2 2 81 5 156094783 156097869 GACATCGATGTGATCATGGG 59 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891 1 1 2 90 16 71019133 71020122 AACCTAAATGGTGGAGCCA 59 71021819 71021837 CTCCATCTTGCTGCTTACG 59 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 1 2 3 100 3 150853790 150855175 GGTATTTATGATAACAGATGCCCTC 60 150850109 150850129 GCTCTAGGAGAAGTTTCTGCT 60 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000090646 2 1 3 86 16 74799214 74800687 TATTATGGGCCAGTCAAAGAC 58 74801362 74801381 CTTGAGGAAGAGCTTGTCTC 58 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 2 4 4 113 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358549 160358567 TAAGCAGGAGATGAAGCGA 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 3 2 2 81 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731182 157731200 GATTTGTTGGTTTGCAGCC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740 1 1 4 80 16 81632237 81641334 TCAGCTACCATTGTTCCGA 59 81641378 81641396 TGATCCTCTTCTTCAGCGT 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000084299 1 1 2 83 3 66836046 66836064 ATGTCCCTGATACTCCACG 59 66835979 66835999 CTCCATAAGCATGGTCCAC 58 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 1 2 2 80 16 90332940 90332961 CCTTTGCCTCTTCATCTATACC 58 90333000 90336983 AGAGAAATGCCAATGCTATCG 59 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 1 2 2 85 16 66230932 66230950 AGTGTCAATTCGAGAGGGA 58 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435 3 1 2 82 3 155344042 155344060 GGTCCTGAGGTGTATCGTG 60 155344100 155349073 CATTGTAGATAACCCTATATGCTCC 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000084866 1 1 2 80 3 155344044 155344062 TCCTGAGGTGTATCGTGTC 59 155344103 155346955 CATCACGGATAGTCCTATATGC 58 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 3 2 3 94 16 75415446 75415464 TCTAGATCAGGAGCAGCTG 58 75414890 75415389 ACTTCACATCTGCATCTTGG 58 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963 1 1 2 80 16 81382498 81434184 AGGATCAAGATTGGTGAAGC 58 81382437 81382455 GTTCACAGTGCAGTAGCAG 59 NA Rattus norvegicus 81 AY172581.9 ENSRNOG00000030478 ENSRNOT00000040038 1 1 1 60 MT 618 642 GAGCCTGTTCTATAATCGATAAACC 60 658 678 TAGGCTGAATTAGCGAGAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AY172581.21 ENSRNOG00000033545 ENSRNOT00000049396 2 1 1 61 MT 3807 3825 AGGGTGTATTGGTAGCACG 60 3764 3787 GGACAATAGGAATTGAACCTACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060522 ENSRNOT00000083901 3 1 1 65 5 5737100 5737118 AGTTCTGGGCTGTAGTACG 59 5737053 5737071 GTCACCATATTGATGCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052755 ENSRNOT00000087104 1 1 1 60 2 85008811 85008830 AGAGAAGATTAGCATGGCCC 60 85008770 85008789 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 3 1 1 61 2 115231945 115231966 CTTCTGTTCCTGAGCATCG 58 115231902 115231920 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053556 ENSRNOT00000084488 2 1 1 60 2 260026392 260026411 GTCATGTGGATGTCAGTAGG 58 260026434 260026452 GTCAGAACACTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044362.1 ENSRNOG00000058490 ENSRNOT00000091390 3 1 1 96 20 3140393 3140412 CTATGATGGTCACAGCTCCA 59 3139421 3140334 TTTCTCTGGCTGTCCTTCC 59 Novel Rattus norvegicus 81 AABR07040624.1 ENSRNOG00000058183 ENSRNOT00000082858 3 1 1 60 X 106607333 106607351 GAAGTAACATCCTGCCGAC 58 106607291 106607311 CCTTGCACAAGATAAACCACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000054258 ENSRNOT00000082340 1 1 1 63 2 128343450 128343468 ACTTCCTGTCCTAGTCCCA 59 128343405 128343423 CTTATTCCACCACAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038957.1 ENSRNOG00000054638 ENSRNOT00000077667 1 1 1 60 X 64914283 64914302 AATCAGGATCTTCAGCTGTG 58 64914325 64914343 GGTGGTCTGCAAAGATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056497 ENSRNOT00000090063 3 1 1 60 2 180669058 180669080 GAGAAGATATCATGATCACGGAG 59 180669100 180669118 CAGAGTGCCATGGATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044200 ENSRNOT00000069467 2 1 1 60 2 142840837 142840857 ACTCAGTGGAATTTCAGAAGC 59 142840797 142840819 AGTCTCCCATCCAAGTATTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060465 ENSRNOT00000079120 1 1 1 60 5 152997473 152997493 ACTAAAGTTGGGACAACACAG 59 152997515 152997533 ACTCGTGAGTCTTGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059993 ENSRNOT00000085968 3 1 1 65 8 32053296 32053314 AATGAGGTTTATCCGAGGC 57 32053342 32053361 ATCCATGTCCAAGACAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059021 ENSRNOT00000089219 1 1 1 60 11 46962274 46962292 CTCCATATGCGTCCATCCT 59 46962232 46962250 CACCAGTTCACAGCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 3 1 1 67 2 197784293 197784311 ATCTCTGTGAGTTCGAGGC 59 197784342 197784360 TCTCTGTGTATTGCTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054944 ENSRNOT00000090284 3 1 1 60 5 101849458 101849478 GACGACCTTCCCTGAATAGAG 60 101849418 101849436 ACGCAGCTACTCGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059677 ENSRNOT00000078397 3 1 1 60 8 75827640 75827658 AGCACTCGTAAGCATATGG 57 75827678 75827700 TTTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000056601 ENSRNOT00000089049 2 1 1 60 2 146467032 146467052 TTGCCATTGATGATCGTTCTC 59 146467074 146467092 CACTCAGACTGTGTTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054727 ENSRNOT00000082038 3 1 1 61 11 67337019 67337039 TGGAAGGATACAGAGGTTACC 59 67336978 67336997 GAGTTTCATGCATTTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058807 ENSRNOT00000084459 2 1 1 60 2 175713513 175713532 CATATGTGCATCAGTCAGGA 58 175713472 175713493 GTTCATAGATCAGCACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000059745 ENSRNOT00000087097 1 1 1 60 5 8012953 8012974 GCTAGAGCAATTGTGGTTACAG 60 8012914 8012933 AAGAGTAGCACCTCAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055343 ENSRNOT00000088092 3 1 1 60 2 10368282 10368304 GATACAGAGAAGATTAGCATGGC 59 10368244 10368262 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054813 ENSRNOT00000089220 2 1 1 100 5 50651455 50651474 CAATGAGGTTTATCCGAGCG 59 50651537 50651555 AAAGTACCATAGGCTGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000056305 ENSRNOT00000088072 2 1 1 61 8 64311702 64311720 GACAAAGGCAGGTTGACAG 59 64311744 64311763 AACAATGAGTTCTGGGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054357 ENSRNOT00000086467 2 1 1 60 8 109820178 109820198 GTCACATATGTGTCAGTAGGT 57 109820138 109820156 CAGAACACTGAGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037729.1 ENSRNOG00000052455 ENSRNOT00000081986 2 1 1 81 X 29174883 29174902 TGTGGCCAATATGTTGTCAG 59 29174945 29176339 AAAGAAGCCCTGGATCTGAG 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000061762 ENSRNOT00000090049 3 1 1 60 8 117213336 117213359 CTAGATTCCTTTCTTTATGGAGGC 59 117213299 117213320 GCATAAGCTACTTATGTTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054958 ENSRNOT00000084098 3 1 1 60 8 126883588 126883606 GATGAAGAATGCAGCCAGC 60 126883629 126883648 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045493 ENSRNOT00000070760 1 1 1 61 16 25578392 25578410 CTACGGCCATACCACTCTG 60 25578349 25578368 TGCTGTTTGATTTCTTCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061167 ENSRNOT00000080208 1 1 1 60 8 23032894 23032914 ATGAGGTTTATCTAAAGCGCG 59 23032936 23032954 CTGGGCTACATGGTGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001416.2 ENSRNOG00000059359 ENSRNOT00000087706 1 1 1 60 1 42969034 42969053 CAATGATGCTGTCCAGATCC 59 42969075 42969094 GACACATCTGTGGTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059239 ENSRNOT00000078695 3 1 1 61 1 144625667 144625685 GTACCAAAGACACAGCCAG 59 144625624 144625644 CATATCGGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061708 ENSRNOT00000079211 3 1 1 63 8 20133513 20133532 AGGCAATGACAATTCAAGCT 59 20133558 20133576 TTTCAGGTCAGGGTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000060263 ENSRNOT00000081805 3 1 1 60 16 2193859 2193883 CTGGTCATTTATACTGTAGGAAGAG 59 2193901 2193919 CAGACTTTCCAAACACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059941 ENSRNOT00000088216 1 1 1 87 17 47856777 47856795 AGAAGCTAAGCAGGGTTGG 60 47856708 47856730 CAGACAACTAGCAGAACTATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002782.1 ENSRNOG00000054568 ENSRNOT00000088960 2 1 1 60 1 84833945 84833963 AGGAAGAAGGTGATGTGGT 58 84833903 84833925 CCTAACAGCATATAGTCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060609 ENSRNOT00000090750 1 1 1 60 2 248528225 248528246 ATACAGAGAAGATTAGCATGGC 58 248528265 248528285 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051749 ENSRNOT00000081923 2 1 1 60 4 6880677 6880698 GAATGATAGAGATCAGCATGGC 59 6880638 6880657 TGGAAGCTTCATGAATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068306.1 ENSRNOG00000036543 ENSRNOT00000054650 2 1 1 60 9 97384945 97384963 GAATCGTAATGCAGGGCTG 59 97384903 97384921 ATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000056839 ENSRNOT00000083234 2 1 1 67 9 16957438 16957456 TTTGGTTCCCTGTCCTTGG 60 16957486 16957505 CAGACCTTTCCAAATCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055603 ENSRNOT00000086736 1 1 1 60 6 91645239 91645260 CCTGCTTTCTTTGGAATATGTG 58 91645200 91645221 CTTCAACTATGTGTATAGCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059253 ENSRNOT00000091852 3 1 1 85 X 135651495 135651515 GGCTCTTTAAGAGGCTAACAC 59 135651562 135651580 ACAGGAACCAAAGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2856.2 ENSRNOG00000061485 ENSRNOT00000081397 2 1 1 82 1 278163271 278163290 TAAACACTATGGACTGCACC 58 278161668 278163229 GGTTTCCTGACAATTTATCCTG 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000061686 ENSRNOT00000088324 2 1 1 76 X 157034123 157034141 TGACTTTCCTCATGGGAGC 59 157034065 157034085 TAGGTAACAGTGAATTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000076775 3 2 4 95 7 115874080 115874353 AATAACTCAAAGACAGGGTGC 59 115874005 115874023 TTTGGAAGGGAAACAGAGC 58 Novel Rattus norvegicus 81 AABR07012583.3 ENSRNOG00000059093 ENSRNOT00000089409 1 1 1 80 2 198418852 198418871 CATCTCATCTAAGGCCATGG 58 198418914 198424325 TGGGAAGTCTTCCTTCCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052165 ENSRNOT00000079691 3 1 1 61 X 144402098 144402121 ACAGAGAAGATAACATACCTCCTG 60 144402140 144402159 GCATGGAATGTTTCATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000054892 ENSRNOT00000079934 2 1 1 60 6 133826518 133826536 CCGATGATGAGATCTGGTG 58 133826560 133826578 GATGTCTGGTTACTTGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055584 ENSRNOT00000080550 1 1 1 60 2 213207904 213207924 AATAGAGGAGGACCGAATAGC 59 213207864 213207882 TTGGGCAAATCTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058942 ENSRNOT00000091839 3 1 1 60 X 33175816 33175837 TGGTGTTCTTATATCAGTCAGG 57 33175856 33175876 TCAAGCTAGGATGAACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059241 ENSRNOT00000092220 2 1 1 61 2 205444437 205444455 TGACTCCTGTGGGAAAGTC 59 205444394 205444413 GGGAGTGTGAATACAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027157.1 ENSRNOG00000045923 ENSRNOT00000072610 1 1 1 60 17 17137023 17137041 AGCTTTGTAGACCAGGCTG 60 17136981 17136999 ACTTAGGAGGCAGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061790 ENSRNOT00000090684 3 1 1 62 17 30252422 30252440 TTGTGACTGTTGTGTCCCA 59 30252465 30252484 TGTAAACATAGCCTTTCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000061003 ENSRNOT00000087570 3 1 1 63 2 67757638 67757657 CATACAACCCTGAATGCACC 59 67757594 67757613 TTAAAGTATGAACCAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000248.1 ENSRNOG00000051844 ENSRNOT00000091348 3 1 1 80 1 6279515 6279536 ATGGCCACTTGATAGAGGG 59 6279451 6279469 CTGACCTCCAGTTGAACCA 59 Novel Rattus norvegicus 81 AC126530.2 ENSRNOG00000053576 ENSRNOT00000074178 2 1 1 80 18 28125451 28125469 AGGATGTGGAGAAAGAGGA 57 28125208 28125229 GTATCCATTCCTCTGAAGGG 57 Novel Rattus norvegicus 81 AABR07000159.3 ENSRNOG00000055508 ENSRNOT00000082003 2 1 1 62 1 1886089 1886108 CTCCGTGCATTTGAGATGAG 59 1886132 1886152 GAGGCTTCGTAAAGAATTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027494.1 ENSRNOG00000061243 ENSRNOT00000077100 2 1 1 91 17 34155591 34155609 TTAAGCGAGAGGTTTGTGG 58 34155664 34155682 GATCTACCAGTTCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044473.1 ENSRNOG00000046314 ENSRNOT00000072845 3 1 1 89 20 6945339 6945358 CGGTCGAGATCAAGAAAGGA 60 6945411 6945434 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 3 1 1 209 9 110721470 110721488 ATAGTGTGGAGGTCAGAGG 58 110731672 110731690 CTTGTTGCCTTTGTCCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC120750.1 ENSRNOG00000050522 ENSRNOT00000075001 1 1 1 60 7 123815628 123815647 CACCTGTTCTTGGATCATGG 59 123815587 123815609 CACAGAGATGTTAAGTGCTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058196 ENSRNOT00000086442 3 1 1 61 6 70134343 70134361 GGCTGTTGTGTCACATGTG 60 70134384 70134404 GCAGAGTGTAGACAAAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055785 ENSRNOT00000089452 1 1 1 60 X 51229580 51229599 GTGATTCAACTGATCTGGCT 58 51229539 51229557 CACATGAACCAGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 2 1 1 60 6 29932875 29932895 TTAACAACTAAGCAGGGTCAG 58 29932915 29932935 TCTGTTTGATGTGGATCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060560 ENSRNOT00000080705 1 1 1 60 16 49592770 49592791 CTGACTGTTCCTTAGCATTTCC 59 49592811 49592830 TTATTGTAAGGCCCAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058534.1 ENSRNOG00000048207 ENSRNOT00000054624 1 1 1 64 7 122691127 122691145 GTTGGAATCTGGCACTGTG 59 122691081 122691099 GTATTGTAGGTCCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037923.2 ENSRNOG00000049961 ENSRNOT00000072460 3 1 1 80 X 35366829 35366852 AGATTTCACCTCACATGCGA 60 35366893 35366913 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000059286 ENSRNOT00000082240 1 1 1 60 X 23782337 23782355 CTTCCTGTGGTTTGTTGGC 60 23782295 23782317 TCTTCCAGATGGAATAGTCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061148 ENSRNOT00000092071 2 1 1 60 1 75662917 75662935 CGCTTTCTCCAAACATCCT 58 75662958 75662977 GAGTGAGAAATGGCATGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056232 ENSRNOT00000077947 1 1 1 60 17 9764775 9764797 GGAACGATACAGAGAAGATTAGC 59 9764737 9764755 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053829 ENSRNOT00000078373 3 1 1 60 16 81591655 81591675 AGGACACAGAGATTAGCTTGG 60 81591695 81591715 GGGAACACTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0791.1 ENSRNOG00000051069 ENSRNOT00000076801 2 1 1 121 5 74821300 74837517 GTAGTTCTGTGCATCTGGG 58 74954393 74954411 TAGCATCGTCAGAAAGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057309 ENSRNOT00000091907 3 1 1 80 16 18063961 18063979 GTCTTCACTTTGGCAGCAC 60 18063899 18063917 GTATGCCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058770 ENSRNOT00000078452 3 1 1 61 2 218295958 218295976 AAAGGTGTTGGAAGTGTGG 58 218296001 218296019 TTTCTCCTCTTTGCCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047614 ENSRNOT00000074507 2 1 1 63 X 10497494 10497512 CAGCCATACACCTTGAACG 59 10497449 10497467 CAAGTACTAACAGGCCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061092 ENSRNOT00000079271 3 1 1 60 3 163528957 163528978 AATTCAGAGGAGATTCACATGG 58 163528998 163529017 GACAGCTTCCTAGATGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000059321 ENSRNOT00000082750 3 1 1 60 1 42477190 42477211 AATAGCCAAATCTGAGCATCAG 59 42477229 42477250 AACTATAGAGATCATGCACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053403 ENSRNOT00000088789 3 1 1 90 8 115912484 115912502 CTAGAAGCTTGCAGCTGTG 59 115912553 115912574 GGTCAGAATACTGAGCTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052027 ENSRNOT00000090353 2 1 1 61 8 70698757 70698778 CAGATCGTATAAATCTTTCGCC 58 70698717 70698736 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067197.1 ENSRNOG00000056666 ENSRNOT00000086407 2 1 1 76 9 34381140 34381159 TAAATGTGATCGCTTCTCGG 58 34381083 34381107 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000054069 ENSRNOT00000079601 3 1 1 60 10 57319457 57319478 AGTTCGTTACTAGAGAAGTTGC 58 57319418 57319438 GTCTCATCCTCATGGTTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000057333 ENSRNOT00000079504 1 1 1 60 10 74765422 74765445 ACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053344 ENSRNOT00000088020 2 1 1 61 9 100115226 100115245 GAAGATTAGCATGGTCCCTG 58 100115184 100115203 GTTTCAATGGGATGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059161 ENSRNOT00000090686 2 1 1 61 6 114583667 114583687 AGAGACTATGTCTGCTCAGTG 59 114583710 114583728 GTTCAGGGACTGTTAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 1 1 1 60 18 45960515 45960535 AACTGGATTTCCATCTCTGTC 58 45960555 45960577 ATCAGAACTCTTGACTGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA58 ENSRNOG00000059872 ENSRNOT00000088711 2 1 1 60 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468737 111468757 TGTTGGAGTACTGCAATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057168 ENSRNOT00000084703 3 1 1 68 15 17864441 17864459 CTGCCATGTCTCACATGTG 59 17864491 17864509 CTGGACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000034522,ENSRNOT00000014713 1 3 4 80 3 140160753 140184494 CAAAGCCAGGGTAGAAGAC 58 140184537 140184556 TCGCCGTAAATTTCCTTCAG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000052327 ENSRNOT00000081092 3 1 1 63 3 150800257 150800280 GGCTAAGATCAAGTGTAGTATCTG 59 150800299 150800320 GATGCATGTGTAAATGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006451.1 ENSRNOG00000029732 ENSRNOT00000050860 2 1 1 60 1 234183525 234183545 CAACAACCTCTTCATTGACCT 59 234183566 234183585 ATGGGTAGAGTCATACTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC140988.1 ENSRNOG00000032900 ENSRNOT00000051579 2 1 1 60 3 82971453 82971475 CTATGCACTGTATAACAACTGGG 59 82971495 82971513 TCAGAGTGACTGTTGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064634.1 ENSRNOG00000038771 ENSRNOT00000040085 3 1 1 60 6 88014086 88014109 GCAGGTAATGCTTCTAAAGATCTC 60 88014127 88014146 CAAGCTGTAAGTGACTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054654 ENSRNOT00000083454 2 1 1 64 9 69810245 69810264 TCTTCTAGTCTCCAGCAGAG 58 69810290 69810309 ATGGTCATAGGTCAGAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053947 ENSRNOT00000082728 3 1 1 63 9 85305495 85305513 TCATGAGCATCAGAGGTGG 59 85305450 85305474 CAGATGTTCCTATATCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041892 ENSRNOT00000063645 3 1 1 60 4 120565978 120565997 ATCTGATCCTGTCTGATCCC 58 120565937 120565956 TCAGGCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058757 ENSRNOT00000077951 1 1 1 60 4 125335507 125335527 GTGACTGCTGTGTTACATGTG 60 125335467 125335485 CTGAGTGCAGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057478 ENSRNOT00000082629 3 1 1 60 12 40723580 40723598 ACTTGGCAGAAGAGATCCC 59 40723538 40723557 GCCATGAATAATCCTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056698 ENSRNOT00000084411 1 1 1 60 10 80868001 80868020 GCCTCATAACAAGCTCTCAG 59 80867960 80867981 GAATCACTGTGTCTTTACTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056361 ENSRNOT00000077488 3 1 1 60 12 26889662 26889680 GAGACTGTACTTGCCTGCT 59 26889620 26889642 AGAACCCGTAATCTACTCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011857.1 ENSRNOG00000045839 ENSRNOT00000074961 1 1 1 80 2 172896032 172896054 AGATTTCACCTCACATGCG 58 172896097 172896116 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000057429 ENSRNOT00000085406 1 1 1 60 3 174961060 174961080 CCTGATCTCATCTGATCTTGG 58 174961020 174961039 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060392 ENSRNOT00000088913 1 1 1 60 17 31777160 31777179 TCAGTGCTGTATCACATGTG 58 31777119 31777137 TGGGCAGACATAGTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060964 ENSRNOT00000082389 3 1 1 73 2 189956149 189956167 GGATGAGGCTCATTCTGTG 58 189956094 189956113 ACAACACAATTATGCAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 1 1 1 60 X 7050823 7050842 GAACCTTGTTGCTGAAATCC 58 7050864 7050883 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054541 ENSRNOT00000082881 3 1 1 60 2 95306963 95306981 TCAGTAGGTGGCATAGAGG 58 95307003 95307023 AGATGTTCATAGGTCAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041942 ENSRNOT00000063695 2 1 1 60 X 136888055 136888074 GTGCCTGATACTGTCTTAGC 58 136888095 136888115 ATACGACATACTTGCAATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052922 ENSRNOT00000082720 2 1 1 60 2 73246960 73246980 GCGATGATCATTCCCATTAGG 59 73247002 73247020 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038786.1 ENSRNOG00000052270 ENSRNOT00000078053 2 1 1 62 X 60715570 60715588 AGTCATCAATCCGGTTCCA 59 60715347 60715368 TCTCTTGGTCTTCTTTGTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027009.1 ENSRNOG00000041433 ENSRNOT00000063186 2 1 1 60 17 10572352 10572370 CTGCTCATTTCCCTATCCC 57 10572310 10572329 TACTGAGTGCTTACCAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051851 ENSRNOT00000083882 1 1 1 60 12 38654193 38654214 CTCCCAAATGCAAGAAATTCAG 59 38654154 38654172 GAGCATGAACACAGTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053752 ENSRNOT00000082957 2 1 1 60 17 90799710 90799729 CAAGGGTATACGAGTAGCTG 57 90799669 90799690 TAAGTCTTGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114111.2 ENSRNOG00000057190 ENSRNOT00000091092 2 1 1 82 7 70487984 70488004 AGAGTCAGACCTCAGACAG 58 70488050 70488068 AGAAATAGTTGCAGGCAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052985 ENSRNOT00000078584 1 1 1 60 12 46248020 46248038 ACTGTTCTTGGGTCAAGGG 60 46248059 46248080 GCTTGCTTGGATATTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109958.1 ENSRNOG00000021960 ENSRNOT00000030811 1 1 1 88 13 93560585 93560609 CTCAGCTACTCTACAAATTTGAGAG 59 93560520 93560539 TCCAATTCGAACCTGGGAC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055409 ENSRNOT00000081982 1 1 1 60 X 96978000 96978018 ACACATGTGTCAGTAGGTG 57 96977958 96977979 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076830,ENSRNOT00000078786 3 2 4 61 19 17402070 17402088 CCATTCTGAGGTTCCTGCT 59 17402027 17402051 CACCAATAAGAAGAGACTTATCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053796 ENSRNOT00000082263 2 1 1 60 10 57319447 57319468 TAGAGAAGTTGCTCTGACTGTG 60 57319408 57319428 GGGACACTATGTCTCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053464 ENSRNOT00000083738 1 1 1 60 1 201879170 201879189 TCACATGTGCATCAATAGGT 57 201879211 201879230 GTCAGAACACAAGGGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 1 1 1 85 5 160825578 160826726 GGCATACCATACTCCGACTC 60 160826776 160826794 CTCCAGCTGGAAGTCAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000060191 ENSRNOT00000081341 2 1 1 60 12 43981847 43981865 GGGAAGAAGACACCCTGAG 59 43981889 43981907 GCTCTTGACAGAGGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055479 ENSRNOT00000085539 1 1 1 98 1 199494520 199494540 AGACACTATGATCAGGAAGGT 58 199494442 199494461 TTGAGAATCCTGGATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057946.1 ENSRNOG00000058406 ENSRNOT00000067707 2 1 1 60 7 95019991 95020010 GGTGACCCAAGAATACACCA 60 95020033 95020051 CTTCTTGAAGCCCACTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054290 ENSRNOT00000088250 3 1 1 60 2 38358872 38358894 GATACAGAGAAGATTAGCATGGC 59 38358834 38358853 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887,ENSRNOT00000076831 2 2 5 81 6 114770908 114780361 ACCTTTAGGAACTCAATGTGTC 58 114770848 114770866 AGTGATCTAGGCCATGAGC 59 Novel Rattus norvegicus 81 LOC100360296 ENSRNOG00000061094 ENSRNOT00000091278 3 1 1 80 X 73358873 73359920 GGAACAGCCTCAAGATAACAC 59 73358813 73358834 TTGATCCAGCCATAGTAATTGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044193 ENSRNOT00000069460 2 1 1 60 14 66685019 66685037 AGAACAGGACCAAGACAGC 60 66684977 66684995 TCCCAACCAAGTACCAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004539.1 ENSRNOG00000056733 ENSRNOT00000086862 3 1 1 82 1 147270598 147270619 ACAGAGACAACTAGTACAACCC 60 147262624 147270555 TCTTCCTGGACTTTGGCTG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059283 ENSRNOT00000090130 2 1 1 60 14 21783063 21783081 CTTGGTCGAAGATAGCCCT 59 21783101 21783123 TACTATACCCTCAACCAAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 3 2 2 80 9 4276825 4276977 TATGAAGAGGGACCCAAAGC 60 4277018 4277038 TTATCCACGACCTCTTCATCC 59 Novel Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076385,ENSRNOT00000076888 3 2 2 145 13 77785097 77785115 CAAGTCACTTCAGACAGCA 58 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA19 ENSRNOG00000058604 ENSRNOT00000088265 3 1 1 60 2 198316046 198316066 CTTGGAGGTATATTAGCAGCA 57 198316087 198316106 TTTGTCTGAAGGTGACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061732 ENSRNOT00000081698 1 1 1 60 2 198515670 198515688 GCAGATTCCCGTAACTTCC 58 198515707 198515730 CTCCAAATAATACAAGTCAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052820 ENSRNOT00000082690 2 1 1 60 14 3385290 3385308 TCAGTCTGTGGTATGTGGG 59 3385331 3385350 TCTGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4100424 4103338 TGGACAAACAACTGTAAGTTCC 59 4103375 4103397 CATCCTGTAGAAGTGGTAGTAGG 60 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000084331 2 1 3 107 9 4072913 4080824 CACTAACTGTCTGCTTCTGC 59 4081472 4081491 CTAGCTGCTGTAATCTGCTC 58 Novel Rattus norvegicus 81 AABR07066135.1 ENSRNOG00000055764 ENSRNOT00000077570 2 1 1 80 9 3817662 3817684 CTATCATTGGAAACCAGATTCC 57 3817722 3817743 TATGTATGTCCTTAATAGGGCC 57 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043,ENSRNOT00000092119 1 2 2 80 10 4488838 4489606 GATCAGAGTGTCTTTGCCT 57 4489647 4489668 GGTGAATCACATTCATCTTTGG 58 Novel Rattus norvegicus 81 AABR07004992.1 ENSRNOG00000052236 ENSRNOT00000086302 3 1 1 140 1 173284394 173284412 GACTCTTCCAAGGACATGG 58 173284527 173284545 TATCCTGTAGTTGCCCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061330 ENSRNOT00000089797 2 1 1 60 4 10104155 10104174 AAGGCTATGTCTGCTCAGTG 60 10104194 10104215 GAAGTAAGGCTACCAATCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060507 ENSRNOT00000077385 1 1 1 62 1 282155557 282155577 CTGATGTTAAGGTTTGAGAGC 57 282155515 282155533 GTAACTGACAGAAGTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000061622 ENSRNOT00000081692 2 1 1 60 10 106022209 106022227 GTAAATTCCCGGAGGAGCA 60 106022250 106022269 GATGCTCACACCTGTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011708.1 ENSRNOG00000048557 ENSRNOT00000071263 3 1 1 70 2 166850504 166850522 TGAGATCCAGCTGTAAGGC 59 166850555 166850574 GATGTTACTACCCACAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051926 ENSRNOT00000084810 3 1 1 60 14 43500180 43500198 TCATCTCACTGATTGCCGT 59 43500221 43500240 GGGAGGACATTTATCTAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043249.1 ENSRNOG00000057493 ENSRNOT00000074744 2 1 1 81 19 26787996 26789905 GCTCAACAACGTAATGAAGTC 58 26789945 26789966 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054090 ENSRNOT00000091434 3 1 1 61 17 24500597 24500619 TAGAAGGGTACAGAGAAGATCAG 59 24500640 24500658 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 1 1 1 73 4 101645800 101646199 TAATGCTCTGGATCCAGGA 58 101646236 101646254 AATGGCAACCGACAAAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 1 1 1 61 X 100207596 100207614 TACTACCACCAATGCCAGC 60 100206262 100206849 TCTCGACAATCTTTCCTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC134632.1 ENSRNOG00000046877 ENSRNOT00000071225 2 1 1 69 12 47458489 47458507 CTCTGTAGATCAGGCTGGC 60 47458438 47458456 CTTTAGTCCCAGCACTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035312 ENSRNOT00000053435 2 1 1 60 14 93047344 93047363 AACACGTCCAAACTCATCTG 59 93047303 93047321 CCAAGTACTAACCAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012072.1 ENSRNOG00000047458 ENSRNOT00000072115 1 1 1 77 2 184826993 184827011 AGCAATGAATGCTTCAGGA 57 184826934 184826954 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000057523 ENSRNOT00000083532 1 1 1 60 1 116714859 116714879 CAACAGAAAGACAAGAACAGG 58 116714819 116714840 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052722 ENSRNOT00000079082 1 1 1 60 1 116723489 116723511 GACAACAGAAAGTCTAGAACAGG 59 116723451 116723470 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.4 ENSRNOG00000053845 ENSRNOT00000083765 1 1 1 60 17 44748680 44748698 GTGAACGACATCTTCGAGC 59 44748721 44748740 GCTTGTTGTAATGAGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058723 ENSRNOT00000085731 2 1 1 60 2 264523450 264523469 TGTCCCTAGAAGTGATGCAG 59 264523492 264523510 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.14 ENSRNOG00000050488 ENSRNOT00000075299 2 1 1 60 1 121219405 121219424 GCTGCTGGTTATATTCCAGG 59 121219364 121219383 ATTTAACAGTCGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000058033 ENSRNOT00000081251 1 1 1 63 12 9997685 9997703 CATTGGCCATTCAAGTGGG 60 9997640 9997661 CAAACACTTAAGTTTGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053505 ENSRNOT00000079244 1 1 1 60 1 15778209 15778230 CGATACAGAGAAGATTAGCTCG 58 15778249 15778269 GAATCTTCACGAATTTGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053880 ENSRNOT00000088346 3 1 1 60 1 6440082 6440103 CCAGGATCTGTCCTAGTAAAGG 60 6440124 6440142 TGTAAACAAGGTTGGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000061556 ENSRNOT00000086360 2 1 1 62 1 89994494 89994513 CCTGAAGAATGGCTTCTCTG 58 89994451 89994469 CCACATTTCAATGGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061143 ENSRNOT00000083828 1 1 1 60 14 59631228 59631246 CTCTGAATGTGCCAACTCC 59 59631268 59631288 CAATTATGCAGTTGAGTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000055783 ENSRNOT00000087315 1 1 1 60 2 205314531 205314549 GATTGGTATGCGCCTTTGG 60 205314570 205314591 TAGAATCTCCTGATGCACTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.4 ENSRNOG00000046914 ENSRNOT00000072529 3 1 1 60 1 121227143 121227162 AGATCTGATCAGTCAGGCTG 59 121227102 121227120 TGGTTATACCCAGGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054509 ENSRNOT00000077872 2 1 1 60 1 148033348 148033369 ATACAGAGAAGATTGGCATGAC 58 148033389 148033408 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055386 ENSRNOT00000079619 3 1 1 60 1 188542951 188542971 GAAGAGCATGTTCTTGATTGG 58 188542992 188543011 AAGTCCCAGTCCAGTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128154.1 ENSRNOG00000060588 ENSRNOT00000090067 3 1 1 80 10 46483992 46484012 AAATGGCAGGGATACATCTG 58 46483930 46483949 GGCCAAGACATCTATAGCAC 58 Novel Rattus norvegicus 81 Rn60_20_0046.5 ENSRNOG00000059825 ENSRNOT00000086128 2 1 1 60 20 2489071 2489092 TCACATGATTAGAGTCAGACCC 59 2489032 2489051 GCTGATTCGGTGGATAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055268 ENSRNOT00000078933 3 1 1 60 6 91633156 91633176 TTGCACATCTTATTGACCTGC 59 91633116 91633137 AGCACGTAAGAAATAACACTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056048 ENSRNOT00000086645 2 1 1 60 14 107917859 107917877 CTGCTGTGTCACATGAGAG 58 107917817 107917837 TGTTCTTAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052538 ENSRNOT00000090677 1 1 1 60 1 116744567 116744588 GACAACAGAAAGTCAAGAACAG 58 116744528 116744547 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052538 ENSRNOT00000090677 2 1 1 61 1 116744567 116744588 GACAACAGAAAGTCAAGAACAG 58 116744527 116744547 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059083 ENSRNOT00000086713 3 1 1 61 1 238986083 238986101 AGAGACTTTGACAGCCCAG 59 238986124 238986144 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 3 1 1 60 2 84566325 84566347 CATCCCTTCTTAACACGAAAGAC 60 84566367 84566385 GCAGTTAGATGGTGATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055905 ENSRNOT00000079284 3 1 1 60 2 131853895 131853915 GTATTGAAGATGTGGCTGCTC 60 131853937 131853955 TACTCTCATCTCTGCCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055060 ENSRNOT00000082784 1 1 1 60 1 116719954 116719974 CAACAGAAAGACAAGAACAGG 58 116719914 116719935 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cylc1 ENSRNOG00000056740 ENSRNOT00000086866 3 1 1 87 X 82295540 82297038 CATGTTAATCCGTCAAACTAGG 57 82297083 82297104 CTTCTTCATATCTGGCATAGGT 58 Novel Rattus norvegicus 81 AABR07059632.3 ENSRNOG00000061046 ENSRNOT00000091075 1 1 1 80 4 28224622 28224640 GCAGATCCCAGACCTTCAG 60 28224440 28224580 GATGCAGTAGAGCCTGTAGAG 60 Novel Rattus norvegicus 81 AABR07059632.3 ENSRNOG00000061046 ENSRNOT00000091075 3 1 1 83 4 28220963 28220987 AGAAAGAAGAGATTCAGTCCCT 59 28220901 28220919 TCTGTTGTGTACCCTCGAG 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000056544 ENSRNOT00000084387 2 1 1 65 4 169403524 169403543 GTATTCAGTGCAGTTCAGGG 59 169403569 169403589 GCCAATTTCAATGTTCCAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054261 ENSRNOT00000091871 3 1 1 60 4 17910536 17910556 GGTCAAGGGTATATGAGTAGC 58 17910578 17910596 GGACTCAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059457 ENSRNOT00000080661 3 1 1 63 5 150492366 150492384 CCATAGCCATGGGATCTCC 59 150492321 150492339 ATACCTGGGCTGTCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056403 ENSRNOT00000085602 1 1 1 60 5 111649890 111649913 ATACAGAGAAGATTAGCCTGATCC 60 111649853 111649873 CGAAATGCTTCATGAAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059228 ENSRNOT00000088862 3 1 1 60 5 118496275 118496294 CTGGAACGGTACAGAGACTC 60 118496234 118496252 TGCTTCATGGATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006327.1 ENSRNOG00000041469 ENSRNOT00000063222 3 1 1 67 1 229066001 229066020 ATTGGAAGAAGGAAGATCCC 57 229065953 229065972 GATCTAGCAGTTGCTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060428 ENSRNOT00000092221 2 1 1 80 2 4843189 4843209 CCAATGAAGTTTATCTGAGGC 57 4843251 4843269 TTTGAGAAGATCCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000053704 ENSRNOT00000088668 1 1 1 89 6 110596647 110596665 CTGTGGTCAGGATAGGCAG 60 110596718 110596736 CTAGAGGTGGTCACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 1 1 1 60 1 213460768 213460788 TAAACCTACCCTGTGTACACC 59 213460809 213460828 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001064.1 ENSRNOG00000017678 ENSRNOT00000023779 3 1 1 80 1 36954964 36954983 ACTCCACTGATGTCAAACCA 59 36954901 36954926 GTTATTCAGAGGTTCCATCTTTGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055710 ENSRNOT00000086108 1 1 1 60 14 52485803 52485822 TGTGTCAGTAGGTTGCAGAG 60 52485762 52485780 TCAGATGCCCATAGGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053682 ENSRNOT00000081479 1 1 1 71 14 57833355 57833373 ATAGCTGGTTTCACCAGGG 59 57833408 57833426 CTTGAGGGAAATCACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021005.1 ENSRNOG00000025964 ENSRNOT00000011332 1 1 1 60 13 53067815 53067834 TCAGCAAAGTGTTCTTCACC 59 53067856 53067875 CATCTGTGATACTGTCCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 1 1 1 62 3 83589456 83589479 CAGAGGCTATGTCTACATTTAGTG 59 83589497 83589518 CGCCATGCTACTAATAATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058492 ENSRNOT00000081545 3 1 1 61 14 82341613 82341633 GCCTCGTATAGTAACTTGTGG 58 82341572 82341590 CCTTCCCACAGACCTAACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044838 ENSRNOT00000070105 3 1 1 82 10 27204940 27204958 GTTTATGGCCATAGCACCA 58 27204876 27204895 ATTCAAGTACAAACCAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000054254 ENSRNOT00000079669 1 1 1 61 14 81589138 81589161 CTCATACTACCAGACATCTTTGTC 59 81589175 81589199 TACATCTGTAATAGACACCTTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053173 ENSRNOT00000091876 2 1 1 60 14 33899773 33899795 GATACAGAGAAGATTAGCATGGC 59 33899735 33899753 GGAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055908 ENSRNOT00000088162 1 1 1 60 6 136005857 136005875 TGACACAATTTGAGCTTGC 57 136005899 136005917 CAGAGAAGAGAACACCGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000061409 ENSRNOT00000085510 2 1 1 60 14 2863673 2863692 GCAAACTCGATCACTAGCTC 59 2863632 2863650 TCTAGCAAACCTGGTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA76 ENSRNOG00000051736 ENSRNOT00000082054 2 1 1 60 14 21268222 21268241 CTTTGCTGGAGCATAACTGG 59 21268181 21268201 TAGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.2 ENSRNOG00000060459 ENSRNOT00000083650 1 1 1 80 1 83573196 83573358 GGGATATGGTGTGATCTTTGC 59 83573399 83573418 CCGAAGTTTCTCATGGTGAC 59 Novel Rattus norvegicus 81 AC142154.2 ENSRNOG00000060459 ENSRNOT00000083650 3 1 1 81 1 83573196 83573358 GGGATATGGTGTGATCTTTGC 59 83573401 83573419 CCCGAAGTTTCTCATGGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060363 ENSRNOT00000078777 2 1 1 60 1 143496592 143496610 TGCTCATGAAGTAGCACGT 59 143496634 143496652 GGGCCAGACTAATCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053509.1 ENSRNOG00000057149 ENSRNOT00000084122 1 1 1 80 3 111815925 111815948 ATTCTCACAGTTTCTCGAATGG 59 111815862 111815881 TGAGTCCCTGAAACTTGTCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058835 ENSRNOT00000081774 2 1 1 60 3 163446976 163446996 GTCAGCTAGTCAATCAGTCAG 58 163447018 163447036 AGAAAGGAAGGGACATCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052019 ENSRNOT00000089598 2 1 1 60 1 224887133 224887152 ATTTGACATCCCATTTGGCT 58 224887092 224887110 AAACTTGCTTATCCAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 2 1 1 61 8 13223535 13223557 AAGTTGCTTCTGATGTCGG 58 13223582 13223600 CTCCTGCTCATCATGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006591.1 ENSRNOG00000056301 ENSRNOT00000084204 3 1 1 70 1 241771596 241771615 TAGAGACATCTCTGGCTGTC 58 241771650 241771668 GTTTCAGAGTGTGGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 2 1 1 62 19 426226 427418 AGAGATCCAAGAACAACAGGG 60 427436 427460 CCAGGTCTTCATAATATGGATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA25 ENSRNOG00000053665 ENSRNOT00000079107 1 1 1 60 12 39008146 39008164 AGTTCTCCACAGGATTCCA 58 39008186 39008206 AAATAATAGCACTGTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060282 ENSRNOT00000078813 3 1 1 62 12 23767293 23767312 TTGAGGAGATTAGATGGCCC 59 23767337 23767355 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014524.1 ENSRNOG00000055589 ENSRNOT00000079822 3 1 1 80 14 19281748 19281767 GCAAACAGCATTTGTTGGA 58 19281814 19281832 GTCATCTTCTGAAGAGGCG 58 Novel Rattus norvegicus 81 AABR07035194.1 ENSRNOG00000055786 ENSRNOT00000087840 3 1 1 80 12 6625776 6625797 TATCGGGCAAATAGAACAACTC 59 6624797 6625737 TATGTGCAGAAAGTATCCCAC 58 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258,ENSRNOT00000090885 2 2 2 85 13 96009580 96009602 GGACAGTATCCTGTCATATACAC 58 96009647 96017768 TGAATGATCCAGGTTCCGT 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000051940 ENSRNOT00000083893 1 1 1 62 5 6241058 6241076 ATGAGGTTTATCCAAGGCG 58 6241014 6241033 ACAAAGCATGAGCTTTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115181.1 ENSRNOG00000058984 ENSRNOT00000082295 3 1 1 92 10 14136905 14136925 CACACTCACATACACATTCAC 57 14136977 14136997 GTGTGAGTGTATGTGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059829 ENSRNOT00000088708 2 1 1 60 10 20434383 20434401 TGGCAAAGGTGTAACATCC 58 20434423 20434443 GCCACATCAGTAGAATCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 3 1 1 70 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634333 107634351 TCATGGACTTGGCTTAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002711.1 ENSRNOG00000041518 ENSRNOT00000063271 3 1 1 62 1 82585804 82585824 GTATGTATGCATGTGCATGTG 58 82585762 82585780 CACATGTAAGGGCACATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057845 ENSRNOT00000078090 3 1 1 60 1 215027280 215027300 CTGAAACTGGGACAGTATGGA 60 215027240 215027260 GAATCTCTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004021.1 ENSRNOG00000047301 ENSRNOT00000071117 2 1 1 60 1 122653679 122653697 CAGCTCTAAGCTGGATCCA 59 122653637 122653657 CTTCTCTATTGAGCAGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dppa1-ps1 ENSRNOG00000028544 ENSRNOT00000037099 1 1 1 60 12 4516887 4516905 GTCTCCTACTCCTTCTCCC 58 4516927 4516947 CAAAGCTGATCTGATGATGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052261 ENSRNOT00000086384 3 1 1 60 7 36004959 36004977 GATCTGGCTGTGATGTCTG 58 36005001 36005019 CAGCCAGCTTAGTCAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.3 ENSRNOG00000054804 ENSRNOT00000084028 1 1 1 80 15 31041982 31042177 GATTTGCTGGGTGAGAGGA 59 31042219 31042239 CTCAGAGAAGAATTGGTTCCC 58 Novel Rattus norvegicus 81 AABR07041725.1 ENSRNOG00000040189 ENSRNOT00000061851 2 1 1 114 X 137818862 137818882 TTGGACCAGAGAAACACCT 59 137818766 137818790 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060877 ENSRNOT00000081491 2 1 1 60 9 26957092 26957110 GAGAGGAGAAAGGCTACGT 59 26957050 26957070 GAGGACCAACTAATAGCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052399 ENSRNOT00000086838 1 1 1 60 13 89209406 89209424 CGGCACTGAGAACATTAGC 59 89209364 89209384 GATCGCTTTATGAATGTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055077 ENSRNOT00000089186 3 1 1 60 9 120323370 120323392 ATGCCAGTAGGTAGTAAAGAAGG 60 120323332 120323353 TTCATAAGTCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.2 ENSRNOG00000054267 ENSRNOT00000092212 3 1 1 88 15 29291272 29291420 TCTTAGTGTTTGGAGGAAGC 58 29291203 29291221 GTTCACAGTCAGAGAAGCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060811 ENSRNOT00000079752 2 1 1 60 5 151858784 151858806 GATACAGAGAAGATTAGCATGGC 59 151858826 151858844 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041720 ENSRNOT00000063473 1 1 1 60 1 28595998 28596020 TCTGGTTTCAGAATCTAGACAGG 60 28596040 28596058 GTATTCCCAGGCAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044063.1 ENSRNOG00000053910 ENSRNOT00000078002 3 1 1 84 19 54494637 54496054 ATACATAGGAAACCCTTCACTG 58 54496823 54496842 GATGAAACAGTGTTGTGACC 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000055477 ENSRNOT00000091269 2 1 1 60 1 163463411 163463431 CCAAAGTTCAGGAAACTTGAC 58 163463452 163463471 GAGAGCATGAACCTAGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059526 ENSRNOT00000092183 1 1 1 60 5 59887330 59887351 AGAGCAGAGACCATGTATACAC 60 59887291 59887313 GGCTACTAACATTCAGATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044566 ENSRNOT00000069833 3 1 1 60 1 255816903 255816923 ACCCTATCCTCAACCTATCTC 58 255816943 255816963 CTCCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013566.1 ENSRNOG00000056490 ENSRNOT00000074243 3 1 1 81 2 244549850 244549872 TCACCTCACACCAGAATGG 59 244549916 244549935 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 Rn60_9_0975.2 ENSRNOG00000059440 ENSRNOT00000079081 1 1 1 60 9 97784918 97784937 AGTCAAGACAGAGATGAACC 57 97784959 97784978 TTCAAGTTGTTTCCATGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0975.2 ENSRNOG00000059440 ENSRNOT00000079081 2 1 1 60 9 97784920 97784939 TCAAGACAGAGATGAACCCA 58 97784959 97784980 CTTTCAAGTTGTTTCCATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.1 ENSRNOG00000048336 ENSRNOT00000070836 1 1 1 60 2 231875459 231875477 CGTCACTGCTGCTAATCTG 59 231875499 231875519 CCATTGCTAAAGTGCAATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000057438 ENSRNOT00000077626 2 1 1 61 14 43587200 43587219 ATCCTAATCTGGACCAGAGC 59 43587158 43587176 AAACAAACAGGCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056056 ENSRNOT00000079716 1 1 1 60 14 52980940 52980963 GATACAGAGATTATTAGCATGGCC 59 52980903 52980921 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adora3 ENSRNOG00000050743 ENSRNOT00000082943 3 1 1 80 2 208373762 208373780 TTCCATCATGTCCTTGCTG 58 208373820 208375729 GTGGTAACCGTTCTATATCTGAC 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000054476 ENSRNOT00000080214 1 1 1 60 3 86024972 86024991 ACTGTGTCTGAGACATCTCC 59 86024931 86024949 CATTCCACTTCAGTGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.2 ENSRNOG00000057861 ENSRNOT00000080341 3 1 1 60 14 85277073 85277092 TTCCTCTTCCTGAGTGTCTC 59 85277111 85277133 CCTTTAGTCAGTTTCTTAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017878.1 ENSRNOG00000061789 ENSRNOT00000081436 1 1 1 97 15 32188776 32188984 AGTTTCATTGGGTGAGCAG 58 32189044 32189063 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AC097037.2 ENSRNOG00000033186 ENSRNOT00000052060 1 1 1 60 15 32917175 32917193 CAGATGGTCACTGATGTCC 58 32917133 32917152 CCCGAATTTCTGTCTTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061473 ENSRNOT00000088973 2 1 1 60 14 41243128 41243147 TGGTGGCTATGTTACATGAG 57 41243168 41243188 GAGCATAAGATACAACCGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD24 ENSRNOG00000060649 ENSRNOT00000091054 2 1 1 60 13 78853457 78853476 TTGCTACTCTTGACAGTTGG 58 78853496 78853517 GCCTCAGTTATGATTAATGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 1 1 1 86 9 78295401 78295421 TCCGCTTTCTACTGCTCAC 60 78295333 78295352 AATTCTTGGTGGCAAGAAGC 60 Novel Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 3 1 1 92 9 78295482 78295500 GTAAAGTCGCACAGCTGTG 60 78295402 78295422 TGAGCAGTAGAAAGCGGAG 60 Novel Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 1 1 1 60 4 126071214 126071232 TGCAGACATGTTGGAAGAG 58 126071172 126071190 TTCCAAGACCTGAGTAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 3 1 1 60 2 257462534 257462554 AACTACCTTATTCTGCACCAG 58 257462576 257462597 AGTGATGCTAGTGTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 1 1 1 78 20 18046145 18046163 TGTTTGCGTCTTTCATCCG 59 18046204 18046355 TGAGCTAGGAAGACCTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U11 ENSRNOG00000053931 ENSRNOT00000081762 1 1 1 60 1 20389054 20389074 ACATCAAGAGATTTCGGAAGC 59 20389096 20389114 GGACCAATGATCACCAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032751.1 ENSRNOG00000060359 ENSRNOT00000077553 2 1 1 149 18 79854915 79854933 CCTTAGTCACGCAAGTCCA 60 79855048 79855066 AGAAGTATCGCCACCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000058078 ENSRNOT00000090487 3 1 1 61 13 105109971 105109991 CAGCCAATTAAACCAGTCAGG 60 105110014 105110032 GTTTATGGCCCTTGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021530.1 ENSRNOG00000047609 ENSRNOT00000071148 2 1 1 60 13 76855851 76855872 CCTAGTTTGTCTGATTCAAGCA 59 76855812 76855831 GGCACAAACAATTACTTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053788 ENSRNOT00000079577 2 1 1 60 20 3022141 3022162 TAACTAGCTCTAAGGATGTCCC 59 3022181 3022201 TGGGTTAAATGCACGATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056284 ENSRNOT00000086655 1 1 1 60 6 74187165 74187183 GAGAAGATTAGCATGGCCC 58 74187207 74187225 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 2 1 1 60 7 31713762 31713783 GGAACTATCCAAAGATTAGCGT 58 31713804 31713822 ACTGCTTCATGATTTGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061068.2 ENSRNOG00000060654 ENSRNOT00000087659 1 1 1 80 4 103524359 103524709 TTGGATTCCAGCTTCCAGG 60 103524751 103524771 GAAGCTTGATCTCCAAGTCTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044719 ENSRNOT00000069986 2 1 1 60 5 25704513 25704532 TGATCTCGGAGGTTAAGCAG 59 25704554 25704573 TGAGAACTTCTGTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060792.1 ENSRNOG00000057220 ENSRNOT00000090783 2 1 1 60 4 93888505 93888523 ATCCAGATGACCCAGTCTC 58 93888545 93888565 TAATAGTGACTCTGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000061901 ENSRNOT00000086861 3 1 1 60 3 146447903 146447922 AAGCAGGATTTCGCTAACAC 59 146447944 146447963 TGATCACTACCGAACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060068 ENSRNOT00000079594 2 1 1 60 13 107096098 107096118 GCCATATGTGTATCAGTAGGT 57 107096058 107096076 CAGAACACTGAGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053758 ENSRNOT00000078165 3 1 1 61 3 58061416 58061434 AGTTGGATTAGGAGCTTGC 58 58061459 58061477 TTCCTGGAGGTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052435 ENSRNOT00000082238 3 1 1 60 20 46568804 46568825 TGGTTAAGCATACACAAGTGAC 59 46568765 46568783 CCTTGAGAGCTTGTCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034751.1 ENSRNOG00000060656 ENSRNOT00000079948 3 1 1 83 11 87484242 87485768 ACTTCGGGTTCTGATTATTTCC 59 87484180 87484198 GATTTGTTGCTCCGGACAG 59 Novel Rattus norvegicus 81 AABR07014836.1 ENSRNOG00000002127 ENSRNOT00000002894 2 1 1 61 14 33596973 33596991 CCCAGAGATCACAGAAGGT 58 33596929 33596948 AATTGTAAGCGCAGTGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 1 1 1 60 20 32909244 32909265 GCATTAATAGATTGCAAGGAGG 58 32909284 32909304 TATTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 2 1 1 60 20 32909259 32909279 AAGGAGGAGAAAGGCTATGTC 59 32909295 32909319 CTGATCATTCAGATGTATTCAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120322.1 ENSRNOG00000048629 ENSRNOT00000074922 1 1 1 60 10 83780204 83780222 CTGGAGATCAGGTTTGCAC 59 83780162 83780182 AGAGATCAGGATTCCTCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057213 ENSRNOT00000081782 2 1 1 60 5 73513631 73513651 GTTTCGATTTATGGCAGACCT 59 73513591 73513609 AGCAAGGGTTCTAGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 pRNA ENSRNOG00000053483 ENSRNOT00000091120 2 1 1 62 20 56182823 56182841 GTACCAGGCATGACTTCCA 59 56182779 56182797 CAATAACGGGACAGGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000058929 ENSRNOT00000087868 2 1 1 60 13 78079657 78079675 GAAGGTGATTCCCTCTCCA 58 78079615 78079633 TTCCAAGGTGCTACATTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050378 ENSRNOT00000074028 1 1 1 60 18 29968534 29968553 TTTAGCCCAAGTCTTACACC 58 29968576 29968594 CTCCAACCAGTTTGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000047655 ENSRNOT00000071216 3 1 1 117 3 18805261 18805436 TTTCACACTATTCACAGTGTCC 59 18805513 18805532 ATTTACACTTGAGCTGGCAC 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000054530 ENSRNOT00000089976 2 1 1 60 4 118589219 118589237 TTGGTTTCAAGCAGGTTCC 59 118589258 118589279 ATTTCTGAAATGGCCAACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054530 ENSRNOT00000089976 3 1 1 60 4 118589219 118589237 TTGGTTTCAAGCAGGTTCC 59 118589260 118589279 ATTTCTGAAATGGCCAACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057161.1 ENSRNOG00000057380 ENSRNOT00000081416 1 1 1 80 7 58287351 58287372 GCCAAGCTAAGAATGAATACTG 58 58287409 58287435 CAAAGTGGACTCAGTATAGACAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000051583 ENSRNOT00000086121 3 1 1 63 13 102768749 102768767 GCTGCAATATCTGTCACCC 59 102768704 102768722 CAAGGAAGAAAGCCAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055133 ENSRNOT00000090864 2 1 1 60 1 254313714 254313733 ATGTACATCAGTAGGTGGCA 59 254313673 254313697 CATACATCAGAATAGACTGTAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054820 ENSRNOT00000085854 1 1 1 60 3 10783691 10783712 GGGTAAAGGTTGCTATCTAAGG 58 10783731 10783751 GATCGCATTACTTAGGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000057313 ENSRNOT00000080796 3 1 1 97 3 164163731 164163750 ATAAGTCAGCCTGTCCTAGC 59 164163653 164163671 TCAGACAGTTCCTTCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050005 ENSRNOT00000072876 3 1 1 60 5 57678074 57678092 ATGTGCCAAATCTCACCTG 58 57678115 57678134 ATTCCAAGTACTAACCGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052031 ENSRNOT00000088832 1 1 1 60 5 2829047 2829065 GTTCGATTGTGTTGCTCTG 57 2829005 2829023 ATGGAAAGTGTCAGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.5 ENSRNOG00000051245 ENSRNOT00000075848 3 1 1 60 X 70422390 70422410 CGTCCACTTTAAGATGCTTCC 59 70422350 70422369 TCCTGATGTCCCTTTAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069968.1 ENSRNOG00000056807 ENSRNOT00000073515 1 1 1 64 8 43142318 43142342 CATGTCTTACCAGATTTACAGTTCC 60 43142276 43142294 CTGATGCACAGAACACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054094 ENSRNOT00000077343 2 1 1 60 13 49302657 49302679 GGAACCATACAGAGAAGATTAGC 59 49302619 49302639 CTTTGCAAATTTCCGTGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049353.1 ENSRNOG00000008953 ENSRNOT00000011847 3 1 1 61 5 118226339 118226357 ATTCCGCTCGTGATTTACC 58 118226295 118226313 GATGGTTCAGGCATTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 1 1 1 60 10 104714068 104714086 AAGAAGACGGCTGAGTCTG 59 104714026 104714045 CCCTTTGTCTAGGAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053545 ENSRNOT00000082823 3 1 1 61 10 95583845 95583865 GACAGTGCGATAGAAATTCAC 58 95583888 95583906 GTTTAACATGCGCAAAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 3 1 1 62 7 108551330 108551469 TTCAAGAGGCTGTCCAGTC 59 108551286 108551304 TTCAACAGACCCTGACCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002683.1 ENSRNOG00000054609 ENSRNOT00000078462 2 1 1 84 1 80982566 80982589 GATCTGGGACACAGCAGAG 60 80982633 80982655 GATGTCATACACGAGTATGATGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058689 ENSRNOT00000088633 1 1 1 60 3 4092863 4092882 AAGTGGCTATTTCTACGCTC 58 4092822 4092842 GGCTACAAACCATTCTTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059409 ENSRNOT00000082220 2 1 1 60 6 100876907 100876928 CTTTACAATGTGCATGAGTAGG 58 100876868 100876892 GTTTACTGAGCATAGACATAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058706.1 ENSRNOG00000054803 ENSRNOT00000080179 3 1 1 60 7 133979816 133979839 TGTATTGAGACTAGAGTCACATCC 60 133979858 133979876 ACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054025 ENSRNOT00000082993 1 1 1 60 7 136948372 136948392 GGATAGCATGGAGATTAGCCT 59 136948332 136948351 GACACTTCACAGAATTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000055551 ENSRNOT00000077812 3 1 1 60 19 34031306 34031325 ACCGTTACAGATTGAAGTCC 58 34031345 34031366 TCTAGTCAAGTGCAGTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057970 ENSRNOT00000079471 3 1 1 63 15 41941450 41941468 AAAGAGACCATTGTGGCAG 58 41941405 41941423 GGTTGCTATAGCACAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052571 ENSRNOT00000087974 3 1 1 61 X 81921166 81921188 GAACGATACAGAGATTAGCATGG 59 81921209 81921227 AAACGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034350 ENSRNOT00000052473 3 1 1 60 7 128122508 128122529 GATCTTGTCTGATCTCAGAAGC 59 128122547 128122568 GTGCATCTTCTAAGTAATGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061641 ENSRNOT00000078641 1 1 1 60 15 101505233 101505251 GACTTTGGTGTGCAATGGT 59 101505271 101505293 GACAATAGGCTACATACACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000056434 ENSRNOT00000088952 2 1 1 60 13 60569737 60569758 TTGCATGTGGAAATACCTTCTC 59 60569777 60569797 AGCATGTTCTGGATACATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054785 ENSRNOT00000081929 3 1 1 60 1 241293021 241293039 CATGAAGCATGCTACCAGG 59 241293060 241293081 TCTAATCTAGTTGAGATGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053519 ENSRNOT00000078287 2 1 1 60 13 9637996 9638015 GGAACTTCCAAATAAGCACC 57 9637955 9637975 GAGTCATACACCATGAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061163 ENSRNOT00000089593 2 1 1 68 5 120096115 120096133 GATGAGGTTTAGCCATCGC 59 120096163 120096183 GTTGAGTTTCCTGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051959 ENSRNOT00000085691 1 1 1 60 18 34224734 34224754 GACCATCTTCATTCAAGAGGA 58 34224774 34224794 TTGTTTAGAGGTTCTAGTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000059686 ENSRNOT00000086923 1 1 1 73 5 165438645 165438663 TTGCTAATGACCTGCTGAG 58 165438590 165438608 AACAAGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061780 ENSRNOT00000091633 2 1 1 60 18 35102722 35102741 CTCTTTGACCAATCCAGGAG 58 35102758 35102782 GAAGATCCTCTTTAGTAGAACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060327 ENSRNOT00000083785 2 1 1 60 13 81388310 81388331 TCACATGTATGTCAGTAGTGGA 59 81388271 81388291 GTGAGAACACTGAGGGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060327 ENSRNOT00000083785 3 1 1 60 13 81388306 81388328 CATGTATGTCAGTAGTGGAAGAG 59 81388268 81388286 CAAGTGAGAACACTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061082 ENSRNOT00000084477 1 1 1 66 7 140904476 140904494 TTATCCATTGCACTCCGGA 59 140904524 140904542 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055682 ENSRNOT00000088809 2 1 1 60 15 12549296 12549315 CGATACAGAGAAGATCAGCA 57 12549338 12549356 GAATGCTTCACGATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049201 ENSRNOT00000075520 3 1 1 60 13 34620809 34620827 AGCTATACCACCCTGAAGG 58 34620767 34620788 GACCTGCCTCAATTAACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043915 ENSRNOT00000069182 2 1 1 60 3 103957838 103957860 CAATCTCATCTGATCTTGGAAGC 60 103957800 103957820 CTGGCTCAGATTCAAATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056039 ENSRNOT00000086198 1 1 1 60 5 63650680 63650698 GGAGGTTGTGTCACATGTG 59 63650721 63650740 TAACATGGGCATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061030 ENSRNOT00000088360 2 1 1 61 18 53669661 53669679 CTGCTGTGTAACAGGTGTG 59 53669618 53669636 ACTGAGCATAAGCAGAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051535 ENSRNOT00000086908 1 1 1 60 5 19832766 19832787 GTGTCACATGTGTATCTCTAGG 58 19832727 19832749 GAACACTTAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051535 ENSRNOT00000086908 2 1 1 60 5 19832765 19832787 GTGTCACATGTGTATCTCTAGGT 60 19832727 19832749 GAACACTTAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053326 ENSRNOT00000080469 2 1 1 63 10 65514771 65514789 GTGCTCCTTATAGTGGCAC 58 65514726 65514744 GTGTCCTCCTTAAGCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059353 ENSRNOT00000089187 1 1 1 60 18 33982408 33982426 TTGCATGTAAGACTTGCCA 58 33982366 33982384 ATCCAGATCACCCAAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051602 ENSRNOT00000084654 1 1 1 60 6 108915267 108915288 CCCAATAGAATACTGAGGTGGA 59 108915228 108915248 CAGAACAAACTACTTGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051406 ENSRNOT00000089687 2 1 1 60 18 4314604 4314624 AGAGGAGGAACATTCTTCAGG 59 4314644 4314664 CGCAAGTTTGTTCTAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059046 ENSRNOT00000091775 3 1 1 63 15 17051127 17051150 GGAACAATACAGAGATTAGCATGG 60 17051087 17051107 TGGAAGCTTCACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.5 ENSRNOG00000057857 ENSRNOT00000078174 1 1 1 72 15 32012571 32012589 TACTCCTAGGCCTTCACCT 59 32012762 32012780 ATTTGTTTGACCTGCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000058349 ENSRNOT00000084877 2 1 1 60 18 47569960 47569978 ACCTCGATTGACTGTCCAC 59 47569998 47570020 GAAGGGAGAAAGTGTAGAATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060678.1 ENSRNOG00000049140 ENSRNOT00000071086 2 1 1 80 4 89252357 89252380 GAGATTTCACCTCACATGCG 59 89252422 89252441 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 1 1 1 64 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649763 43649781 CTGCAGCCAAACTTATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102556347 ENSRNOG00000049911 ENSRNOT00000085961 3 1 1 89 11 33813363 33846243 ATCGCCTTCAAAGTTGTTGAC 60 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000054823 ENSRNOT00000079843 3 1 1 66 6 86491653 86491672 CAATGAGGTTTATCCGAGGC 59 86491700 86491719 AATAAGCCTCAGTATGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056827 ENSRNOT00000086094 2 1 1 60 18 58972878 58972899 GAATATTAACATGGCCACAGTG 58 58972920 58972938 TAGGTTTCGAATGCTCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054092 ENSRNOT00000084978 1 1 1 60 18 51319732 51319752 TGTGTTAGTAGGTGACAAGAG 57 51319773 51319792 TTCTGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.3 ENSRNOG00000056285 ENSRNOT00000088974 2 1 1 84 6 139406418 139406437 CTGCAAATGGACAGTCTGAG 59 139406478 139406773 CTCCATAACAGTAACATTCACTCAC 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056663 ENSRNOT00000079331 3 1 1 60 18 46914177 46914195 CCGTTAAGAACGCACTAGC 59 46914135 46914155 GTGTCCATGATCAATGTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037270.1 ENSRNOG00000048303 ENSRNOT00000073882 1 1 1 60 X 17683643 17683665 AGAGAATATTCTTCCCTGGAGTG 60 17683605 17683624 AAAGATCCTCTGAGAGTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051312.1 ENSRNOG00000059508 ENSRNOT00000092147 2 1 1 60 3 4773236 4773258 CAGTTTACCTGTCTATGAGATGG 59 4773273 4773296 GTTAATCCTGCCTAAGAGATAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051947.1 ENSRNOG00000039025 ENSRNOT00000059678 1 1 1 76 3 29861369 29861387 GACGTTGATCATTTGGGCA 59 29861311 29861332 CCCATCTCACAATTAATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051947.1 ENSRNOG00000039025 ENSRNOT00000059678 2 1 1 77 3 29861370 29861388 TGACGTTGATCATTTGGGC 59 29861311 29861332 CCCATCTCACAATTAATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028237.1 ENSRNOG00000018685 ENSRNOT00000025224 2 1 1 60 17 61331260 61331281 TACAGTTGATAAATCTCAGCCC 58 61331221 61331241 GCTACACAATTTCACAAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052989 ENSRNOT00000083014 1 1 1 60 18 27933515 27933533 GAGAAGATTAGCATGGCCC 58 27933473 27933491 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000056958 ENSRNOT00000083715 3 1 1 66 18 24631282 24631300 GGAAACAGCACTTCTGGTG 59 24631234 24631252 CTTGTCACAACACCGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120727.1 ENSRNOG00000009609 ENSRNOT00000012762 3 1 1 80 X 1615494 1615516 TACGATTATCAAGCAGAGGCA 59 1615434 1615452 GGATCAATGGTTGGCAAGC 60 Novel Rattus norvegicus 81 AABR07052071.1 ENSRNOG00000050109 ENSRNOT00000074833 1 1 1 63 3 35019894 35019914 TCAATTAGTGATCAAGGTGGG 58 35019939 35019957 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 NRON ENSRNOG00000058888 ENSRNOT00000084664 3 1 1 60 3 12870643 12870665 GGATGACATATTCACAACACTGG 60 12870685 12870703 TAGCCTAATGATTCCGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055927 ENSRNOT00000089507 2 1 1 60 18 78919934 78919955 GAGGTTATGTCTATGCTCAGTG 59 78919970 78919994 CGTTAGGCTACTAATTATTCAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054963.1 ENSRNOG00000061850 ENSRNOT00000077751 1 1 1 60 3 175779590 175779609 CCAAATCAGCTGTTGGATGG 60 175779630 175779650 GTGATCAATGCACAGCTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059355 ENSRNOT00000079723 2 1 1 60 X 16254124 16254146 GGAACGATACAGAGAAGATTAGC 59 16254166 16254184 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000079111 2 1 2 60 20 3952350 3952374 CTTACGATAAGCAGCTTATAACCTG 60 3952391 3952410 ACTAAGACAAAGAAGCTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062791.1 ENSRNOG00000045939 ENSRNOT00000074611 1 1 1 107 6 8601111 8601133 CCTCTTCTGTACTGAATGATGTC 59 8601199 8601218 GAGGTAAAGAGTAGCTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062791.1 ENSRNOG00000045939 ENSRNOT00000074611 3 1 1 109 6 8601111 8601133 CCTCTTCTGTACTGAATGATGTC 59 8601201 8601220 AGGAGGTAAAGAGTAGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045187 ENSRNOT00000070454 1 1 1 60 X 119875359 119875377 GCTAGTTCATACCACCCTG 57 119875317 119875338 GACTGTGGTTAATTTCCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055590 ENSRNOT00000084475 3 1 1 62 10 74738924 74738942 GGCTTATCCATTGCACTCC 59 74738968 74738986 TCAAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060971.1 ENSRNOG00000054428 ENSRNOT00000077412 3 1 1 80 4 102068586 102068970 CTCTGGATCCAGGAAACCA 59 102069014 102069032 GACTGATTGTCCAATGGCA 58 Novel Rattus norvegicus 81 AABR07063638.1 ENSRNOG00000036511 ENSRNOT00000054618 1 1 1 60 6 38572551 38572569 CATGATCCAGCCATCTCTG 58 38572591 38572611 CTAGTCATGCTTGAGAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000054970 ENSRNOT00000091849 2 1 1 60 6 23449458 23449477 CTGTGATGATATCCACACGG 58 23449417 23449437 AAGAGAAAGGTGTCATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015687.1 ENSRNOG00000060369 ENSRNOT00000082217 3 1 1 109 14 70478895 70478915 CTACAGATTCAATGCAATCCC 57 70478804 70478823 TAGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000061185 ENSRNOT00000089055 3 1 1 77 17 43776282 43776300 GCTATCAGAAGTCCACCGA 59 43776223 43776241 TGAAGTCCTGAGCGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.10 ENSRNOG00000059953 ENSRNOT00000087855 2 1 1 102 6 138908968 138909071 CATTTCCAAGCTGTGTCCTG 60 138908885 138908903 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 AABR07027811.6 ENSRNOG00000058444 ENSRNOT00000085381 1 1 1 85 17 44744806 44744824 ATCCAGGGCATCACTAAGC 60 44744739 44744757 GTCTCCTCGTAGATGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059855 ENSRNOT00000081293 2 1 1 60 15 91271278 91271299 TACAGAGAAGATTAGTCATGGC 58 91271319 91271338 GGAACATGTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059527.1 ENSRNOG00000060833 ENSRNOT00000082968 3 1 1 124 4 22986945 22986965 TTTGACTCTGTTACAGAGGGA 59 22987053 22987075 GGTATTTAGGCACTGAAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 2 1 1 60 20 867054 867075 GAGGGTATGTCTACACTTAGTG 58 867015 867036 TGCAAGGCTACTAATTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 3 1 1 65 8 53903710 53903734 CAGGATCTATCTATGGACAAGAG 58 53903759 53903777 CCGTTAAGCTGGGAATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061598 ENSRNOT00000091102 3 1 1 60 20 11618304 11618324 ACGATACAGAGATTTGCATGG 59 11618345 11618364 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056626 ENSRNOT00000077937 2 1 1 60 20 45224675 45224693 GTGTCAGTAGGTGGCAGAG 60 45224715 45224735 TTCCTAGGTCAGAATGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053398 ENSRNOT00000080117 1 1 1 60 6 25261047 25261067 GGTGTTGTTCTTGTATCATCC 57 25261088 25261107 TAGGATGAACAAAGGACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057594 ENSRNOT00000091250 3 1 1 60 20 8995505 8995524 CAGCACATACACAGGAACTG 59 8995547 8995565 CATGTCGTCTTTGTGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.1 ENSRNOG00000052708 ENSRNOT00000090145 2 1 1 68 7 143224894 143224912 CTCATACTGGGCCTTGACC 60 143224944 143224962 CTCTCCATGGACAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071500.1 ENSRNOG00000042061 ENSRNOT00000065507 2 1 1 86 8 118618767 118618785 CTTGCCTAAAGAGCAGAGG 58 118618695 118618717 GCACAGTCTATAGGAGCTG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051751 ENSRNOT00000082068 3 1 1 60 11 85393950 85393968 ACATTGCAGCTGCTATGAC 59 85393908 85393929 TAGACACTGTTTCTCCTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053858 ENSRNOT00000091478 3 1 1 60 20 29693433 29693451 TGGCAGATGTATCCCTCAC 59 29693391 29693411 TACTGAACAAAGTGAGTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005779.2 ENSRNOG00000054418 ENSRNOT00000089740 3 1 1 60 1 198801440 198801458 ATCTACGAGATGGCTGCTG 59 198801485 198801505 AAATCTGAATTGGCTGGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC117869.1 ENSRNOG00000031439 ENSRNOT00000041965 3 1 1 60 19 44267920 44267938 TGTGGCCCAAATTTATGCT 58 44267961 44267980 TTGGTAATAAGCCACCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000057324 ENSRNOT00000080645 3 1 1 61 11 48816376 48816394 GTTCATGGGCTTTCAGGTG 59 48816333 48816351 GAAAGCTCATGGCATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC104053.2 ENSRNOG00000059424 ENSRNOT00000091921 1 1 1 60 18 53089866 53089885 TCAGCACACTCTACAGTCAC 60 53089907 53089926 ATAGGGTTAGCACAAACGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057820 ENSRNOT00000081557 1 1 1 74 19 27449899 27449920 CGCTTCAGAAGTACATATACGA 58 27449846 27449864 ATTTGCTGCTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031972.1 ENSRNOG00000046899 ENSRNOT00000072730 2 1 1 60 18 41434276 41434296 TATTCATTGTGGCCCTAGGAG 59 41434236 41434254 TTTCTTGGTTCAACCACGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033045.1 ENSRNOG00000000713 ENSRNOT00000000903 2 1 1 60 11 2786077 2786097 GCTGACGATAGTTGATACTCC 58 2786037 2786058 CTGCCAGCAATTACTATTATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056025 ENSRNOT00000079278 3 1 1 67 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146655 65146674 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033056.1 ENSRNOG00000057596 ENSRNOT00000083815 2 1 1 60 11 3039609 3039629 GACTCATCATCCTTGTTTCCT 58 3039569 3039589 TGTTGGTCTGGATAGCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059498 ENSRNOT00000081068 3 1 1 62 7 2667253 2667275 CAATACAGAGAAGATGAGCATGG 59 2667295 2667315 GGAACGTGTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.1 ENSRNOG00000049084 ENSRNOT00000072234 2 1 1 60 9 34552837 34552856 CTCCAAACGAATCAGCTACC 59 34552796 34552814 TCCTCAGAGACCAGATTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000057112 ENSRNOT00000084213 3 1 1 64 11 68161328 68161348 TCCAATTGTCACTAGATCTCC 57 68161284 68161302 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061325 ENSRNOT00000091256 3 1 1 60 19 43611888 43611907 TCGTATTTCCGTCAGTAGGT 58 43611929 43611948 TCAGAACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060372 ENSRNOT00000080642 3 1 1 60 11 421111 421130 TAGCCAATGAGGTTTATCCG 58 421070 421088 ACAATGAAACCCAAAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052131 ENSRNOT00000091169 3 1 1 60 4 150159681 150159700 AGGGCTATGTCTATGCTCAG 59 150159640 150159660 TGTTAGGCTACTACTCATTCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053345 ENSRNOT00000083506 1 1 1 60 7 36699317 36699336 ACAGAAGACGAAGACATCCC 60 36699354 36699377 CTCACATATCCTTAATGAAGGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055294 ENSRNOT00000084194 1 1 1 60 10 46463380 46463400 CTGTACTCCAGATATGTTGCC 58 46463340 46463358 ATCCTGCAGTCTCGTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD67 ENSRNOG00000052617 ENSRNOT00000086512 1 1 1 60 3 80506704 80506725 ATAGTATCAGGTGATACAGGCA 58 80506746 80506764 CCTGTGCACTTGGTTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057193 ENSRNOT00000088074 1 1 1 60 18 2103557 2103577 GATAGATGAAGACAGACAGCC 58 2103596 2103617 GCTACTCATACCCTTAATTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056169 ENSRNOT00000078553 2 1 1 60 11 86786601 86786620 ATACTTATCTGGCGGAGGAG 59 86786560 86786578 CCTTACCCTTGGGAAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045356 ENSRNOT00000070623 3 1 1 60 11 64849027 64849045 ATTCCACACGAAATGTGCC 59 64849066 64849087 GTACTAACCAGAATGCTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046669.1 ENSRNOG00000051429 ENSRNOT00000082787 2 1 1 70 5 1507144 1507162 GATGGAAGTCAACAGCTGC 59 1507197 1507215 CAGTCTTCTCAACCCAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056317 ENSRNOT00000080261 2 1 1 60 18 87575765 87575784 CACATGTGCATCAGAAAGTG 58 87575805 87575825 ATCACAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058878 ENSRNOT00000087545 3 1 1 60 11 82036659 82036678 CAGAACCTCCAAACAAGCTC 59 82036618 82036636 CAGATGACTGGAGGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055273 ENSRNOT00000083391 2 1 1 78 7 49260804 49260822 TTTAGAGGCATTGCAGGTG 58 49260864 49260882 AACATAGGCGTAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044703 ENSRNOT00000069970 3 1 1 60 18 27871033 27871055 CTGATCTCGGAAGAATAGAAACC 59 27871074 27871093 CCATAGACTTCCACAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051990 ENSRNOT00000084772 1 1 1 62 4 150515712 150515730 ATGAGGTTTATCCGAGGCG 60 150515668 150515686 CCATAGACTGTGGCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058838 ENSRNOT00000090189 2 1 1 60 11 88403712 88403733 CAGGCTATGTCTACATTCAAGC 59 88403750 88403772 GTTAGGCTACTAAGCATTCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.1 ENSRNOG00000054825 ENSRNOT00000077415 3 1 1 60 2 52618950 52618969 TCAACCACTTCATTTCAGCA 58 52618909 52618928 TTGAACAATCCAGCCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043347.1 ENSRNOG00000051410 ENSRNOT00000074702 2 1 1 60 19 27603653 27603671 AACACATGGAAACAACCCT 58 27603693 27603713 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065115.1 ENSRNOG00000048218 ENSRNOT00000075152 3 1 1 70 6 110511751 110511769 TGAGATCCAGCTGTAAGGC 59 110511803 110511821 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058124.3 ENSRNOG00000055178 ENSRNOT00000077137 1 1 1 60 7 101138591 101138610 AGGATTCAATTAAGGTGCCA 57 101138550 101138568 TAAGAGTCCACAACAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068636.1 ENSRNOG00000047678 ENSRNOT00000054647 1 1 1 69 9 113746690 113746708 AGGGCTACAATAGGTGTGC 60 113746741 113746759 TCATGCTTGAGAGTGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051548.2 ENSRNOG00000057376 ENSRNOT00000077741 3 1 1 92 3 16753740 16753965 TCTGGGTATATGGTACCTGTG 59 16754016 16754037 TGCAGTTTATAGTGACCATCTC 58 Novel Rattus norvegicus 81 AABR07042385.1 ENSRNOG00000047872 ENSRNOT00000070905 3 1 1 78 X 154585151 154585170 ATCCCTGAAAGAATTCCAGG 57 154585211 154585231 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056253 ENSRNOT00000091771 3 1 1 70 5 164164228 164164247 GCTCCAGTAGCACATATCCT 59 164164280 164164298 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047194.2 ENSRNOG00000060784 ENSRNOT00000086280 2 1 1 63 5 23358401 23358422 GATGGACTAGAAATCCATTGGG 59 23358446 23358464 CTCTTACCGTAGTCGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 2 1 1 60 7 110500104 110500124 TGGCTACTATGTCACTTTCTC 57 110500064 110500083 AGCATTCACATTGCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051525 ENSRNOT00000090158 3 1 1 60 7 37366399 37366419 TCACAGAAGACGAAGACATCC 60 37366437 37366459 CACATATCCTTAATGAAGGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000057459 ENSRNOT00000082764 3 1 1 61 6 80224798 80224816 AGGGTAAAGGAACTCTCCA 57 80224841 80224859 CAGGATCCAAAGAGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072668.1 ENSRNOG00000033345 ENSRNOT00000091620 1 1 1 60 19 59991312 59991330 CACTGACAGAAGGAAGCAC 59 59991270 59991288 GATCCACATGAACTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 1 1 1 60 8 42839608 42839629 CTTCTGTTCCTGAGCATCG 58 42839566 42839584 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 3 1 1 61 8 42839608 42839629 CTTCTGTTCCTGAGCATCG 58 42839565 42839583 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029863.3 ENSRNOG00000058245 ENSRNOT00000077451 1 1 1 91 10 56530633 56530651 GGCATATGTTAGTGCTCCC 58 56529665 56530578 CGATTCCAAATCTGGCTGG 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000051396 ENSRNOT00000081382 1 1 1 64 6 133759961 133759979 CAATGATGAGGAGCATGGG 58 133760005 133760025 GTCCTCAGATTTCATAAGGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000079489 3 1 2 81 17 14943492 14943513 AATGTACGAAGAAAGGAACAGG 59 14942044 14943450 TCCTGGGTATGCTTATGCT 58 Novel Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 3 1 1 78 7 120138234 120138255 GGCTATTAAATCAGGAAGGAGG 58 120138175 120138196 TCCTGGAGATACAGAATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC135901.1 ENSRNOG00000054640 ENSRNOT00000086148 3 1 1 92 5 154103514 154103532 ATAGAAGCCATTTGGGCAG 58 154103588 154103608 CATACGATGTGTCTGGTGG 58 Novel Rattus norvegicus 81 SCARNA11 ENSRNOG00000054983 ENSRNOT00000081653 3 1 1 60 4 157637078 157637097 GTCTTAACAGGGTAGTCTGG 57 157637120 157637138 ACAGCCCTCCTAAACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058009 ENSRNOT00000091706 3 1 1 60 11 47049267 47049287 TCCTTTCCTCATAGGAGTCTG 58 47049308 47049327 TACACTACCAAGGAGGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 2 1 1 60 17 79036237 79036257 CTAGAACCTCCAAACAAGCTC 59 79036278 79036297 CATTATCACCCGTGTACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 2 1 1 60 6 91581080 91581103 AGTATCTCTGGTATTGAAGAGGTG 60 91581043 91581062 TAAAGTGGGTCACTGTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058466 ENSRNOT00000090935 2 1 1 61 11 52753792 52753810 AGAGAAGACTAGCATGGCC 59 52753835 52753853 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058239 ENSRNOT00000090829 3 1 1 61 11 10274900 10274918 CTATCCTTAGAGGCACTGC 57 10274857 10274877 CTCTCAGTCACCTAATGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059998 ENSRNOT00000077330 2 1 1 80 4 145111179 145111200 GCACATCTACTAAACTTGAAGC 58 145111239 145111259 GGAATGCTTCACAAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043725.1 ENSRNOG00000055568 ENSRNOT00000086623 2 1 1 60 19 36390574 36390598 GGATGATGAAGAAGAGAATAAGCTG 60 36390616 36390634 CACAGCAAGAGGTAAACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033318.1 ENSRNOG00000059691 ENSRNOT00000080073 3 1 1 80 11 17281763 17281786 AGATTTCACCTCACATGCGA 60 17281702 17281722 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07073073.1 ENSRNOG00000050747 ENSRNOT00000075780 1 1 1 60 4 157710090 157710109 AATCCTAACAGTGGGAGCAG 60 157710132 157710150 TACAGGGTCCTAAAGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055528 ENSRNOT00000085160 1 1 1 64 4 103047065 103047084 TCAGTGCTGTATCACATGTG 58 103047020 103047038 ATACTGGGCAGACACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054019 ENSRNOT00000082527 1 1 1 60 7 73213935 73213955 GCGAATATTCTCGCTGTTCTG 60 73213895 73213916 ACTATAGCGAATGTTTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054019 ENSRNOT00000082527 3 1 1 60 7 73213900 73213918 GACAGGCTAAACATTCGCT 58 73213858 73213877 GGTAAAGAACTAGGTCTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057015 ENSRNOT00000080726 2 1 1 60 9 56137096 56137119 GAATTAGACCTTCCCTGAATAGAG 58 56137059 56137082 GAGATACTCATATACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059499 ENSRNOT00000081274 3 1 1 63 17 88628607 88628626 TGTGTCAGTATGTGGCAGAG 60 88628563 88628583 TGTTCATAGGTCAGAACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU85 ENSRNOG00000060559 ENSRNOT00000084000 3 1 1 60 4 157700868 157700886 TTGGTTTGGCTAAGTCCAG 58 157700826 157700846 TATCGACCACCAAGATTACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 3 1 1 60 7 109411688 109411707 GTACGAGAAATGGCTCAGGA 60 109411730 109411748 CACCAATAGCTGCACTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056776 ENSRNOT00000077641 2 1 1 62 7 53840712 53840730 CACTTTGACAGCACATGTG 58 53840668 53840686 ATTCTTCGTACAAGGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.3 ENSRNOG00000052878 ENSRNOT00000077690 2 1 1 84 9 27556403 27556422 GATCAAAGCACTGGTTGGTG 60 27556469 27556764 TCCAACATCTCTTGGCCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000043952 ENSRNOT00000069219 2 1 1 60 9 50874810 50874830 AAGCCCAGGATCATTAATCTG 58 50874770 50874791 CCAATGCAAGTATTAAACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057900 ENSRNOT00000081093 2 1 1 60 7 93868665 93868684 ACGAGGCAGGAAATATACCA 59 93868704 93868725 AGTGTAATGGGTAAGACACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053959 ENSRNOT00000087145 3 1 1 61 10 74757920 74757944 TACTAGAGAAGTTTCTCTGACTGTG 60 74757963 74757981 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000733.1 ENSRNOG00000058047 ENSRNOT00000077927 1 1 1 80 1 24855730 24855752 CAACTTAGAGATGGAGAACACTG 59 24855043 24855691 AGCAGGTTTCTAGAGAAGGT 58 Novel Rattus norvegicus 81 ENSRNOG00000048017 ENSRNOT00000036375 2 1 1 80 7 18793032 18793249 GGATTTCAGACTCCAAAGGG 58 18792971 18792991 GACTGATTCTTTCTCCTGGAG 58 Novel Rattus norvegicus 81 Krt40 ENSRNOG00000013896 ENSRNOT00000018804 1 1 1 80 10 87457832 87457852 GCAGAGAATTCTAGACTTGCC 59 87457466 87457792 TTCGCTCTCATACTTTGACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054913 ENSRNOT00000084519 1 1 1 60 4 93769417 93769436 TTGCAGGTATGTCAGTAGGA 58 93769376 93769394 TCAGTGAGCTGAGCATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033579.1 ENSRNOG00000058863 ENSRNOT00000081347 3 1 1 108 11 28810815 28810833 CTGGATTCGAATCACGCTC 59 28810549 28810745 CTTCAACCTCCACTCTTTCAG 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076600 1 1 3 115 20 44608169 44608187 TGGAGGAAGGTGTTCAGAG 59 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056796 ENSRNOT00000077258 3 1 1 60 7 99482910 99482928 GATGAAGAACGCAGCTAGC 59 99482951 99482970 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012795.1 ENSRNOG00000017695 ENSRNOT00000023972 2 1 1 206 2 208738761 208738785 GAGTATTTCTCTAAGCAGAAGTGAG 59 208738946 208739003 AGAATTAACAGGCTGGTTTCTG 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 3 1 1 60 10 34184395 34184415 AGAAGATTAGCATTGTCCCTG 58 34184355 34184373 AAATATGGACCGCTTCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066818.1 ENSRNOG00000049643 ENSRNOT00000074015 1 1 1 65 9 17175048 17175066 TTTCTCTGTGTAGCCCTGG 59 17175001 17175019 CTCTGAGTTCAAAGCCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 1 1 1 60 12 25290828 25290846 TACCATACTGGACATGCCT 58 25290869 25290888 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 3 1 1 60 12 25290827 25290846 ATACCATACTGGACATGCCT 58 25290868 25290887 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554192 ENSRNOG00000056102 ENSRNOT00000081255 1 1 1 60 10 87913510 87913534 CCTTAGAAATACTATCCATTTGCCC 60 87913474 87913492 TGTAACCAATTGCCACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055698 ENSRNOT00000088463 3 1 1 60 4 119866369 119866387 TTGGTGGTGCTACAGAAGG 60 119866327 119866347 GTTCTATAGCAGACACAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050347 ENSRNOT00000073923 2 1 1 80 10 89335746 89337720 CAAGAAGGATATAAAGCCCGTG 59 89335687 89335705 AGCTCCATCTCGTCATCTC 59 Novel Rattus norvegicus 81 AABR07020537.1 ENSRNOG00000059133 ENSRNOT00000090623 3 1 1 80 13 29844764 29844787 AGATTTCACCTCACATGCGA 60 29844828 29844848 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07012763.1 ENSRNOG00000057707 ENSRNOT00000086252 2 1 1 89 2 206842702 206842720 CCTTGTTCCTTATGGCTGC 59 206828479 206842649 AACCCTGTAAGCATGGGTC 60 Novel Rattus norvegicus 81 AABR07025787.1 ENSRNOG00000059962 ENSRNOT00000089505 1 1 1 88 16 50502267 50502285 CTTCTGCAGCTGAAACTCG 59 50502338 50502356 AGTAAGCTTGCAGTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012301.1 ENSRNOG00000055916 ENSRNOT00000081253 3 1 1 62 2 192463403 192463422 ATACCAACAGAAATGCCCTC 58 192463447 192463465 TTTGGTGGACACTTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 2 1 1 82 2 131957232 131957253 GGTCAGTGCCATTTATAAGCTG 60 131957170 131957189 CAAATGCGTGAAGCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 3 1 1 115 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624967 85624985 CACTATGTCTTTGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043776.1 ENSRNOG00000061454 ENSRNOT00000078388 2 1 1 60 19 39670650 39670670 ACTCATTGACTTACACAGTCC 58 39670610 39670633 CTCAATACTGTTGGAAGTAATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002250.2 ENSRNOG00000059513 ENSRNOT00000083609 3 1 1 80 1 69876856 69876876 TTGATGATTCTCAGAGACTCC 57 69876917 69877351 CAGGTATGAGTCCCAATGAG 58 Novel Rattus norvegicus 81 AABR07014301.2 ENSRNOG00000050982 ENSRNOT00000074231 2 1 1 65 14 8149932 8149951 AGAGAATTGCCAGAGAAGGA 59 8149885 8149903 TTTCAGGATTGAGGTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054716.2 ENSRNOG00000053380 ENSRNOT00000086910 1 1 1 80 3 167442586 167442607 CTGAATCCTTCTCAGAAGAGTC 58 167442645 167442869 CCAAATGTAGCCTATAGCACTG 59 Novel Rattus norvegicus 81 Rn60_10_0890.4 ENSRNOG00000051098 ENSRNOT00000075835 1 1 1 81 10 89168721 89168739 GAGGAAAGGGATGAGGCAG 60 89168223 89168678 CTCTGGAAATACCTTCTCCGA 59 Novel Rattus norvegicus 81 AABR07054247.1 ENSRNOG00000053547 ENSRNOT00000090559 2 1 1 79 3 145392899 145392918 TTAGTTCTCGGAAAGCTCCC 60 145392964 145392982 ATGGTATCCAACAGCTCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001435.1 ENSRNOG00000004144 ENSRNOT00000058849 2 1 1 85 1 43933722 43933745 AAAGTCGGTAGAGGTGAAGC 60 43933656 43933676 CTATTTCCTTTCCAGTGCTGG 59 Novel Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 3 1 1 125 1 198576786 198577166 TTAAGCTGGTCCCAACTCC 59 198576679 198576697 CATCGTCATCGTATTCGGC 59 Novel InUTR Rattus norvegicus 81 AABR07042326.3 ENSRNOG00000060421 ENSRNOT00000085101 1 1 1 60 X 152889444 152889464 ATGGTGGATCTTACTCAACCC 60 152889486 152889504 CAATGGGCTTCCATTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044601 ENSRNOT00000069868 3 1 1 61 8 111941328 111941346 CCTGAATGTGCCTGATCTC 58 111941285 111941304 CTCCCATCCAAGTCCTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070238.2 ENSRNOG00000048192 ENSRNOT00000074538 1 1 1 88 8 60701335 60701353 CGGTCGAGATCAAGAAAGG 58 60701407 60701429 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000058817 ENSRNOT00000090144 2 1 1 60 8 115337968 115337989 GAAGAAGATAGCTTTCCTCCAC 59 115338005 115338028 GTGGATGTTTATAGACTCTTGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007905.1 ENSRNOG00000053229 ENSRNOT00000079385 3 1 1 61 2 34452824 34452844 ACTGAACTGAGAATAGGACCC 59 34444924 34444944 ATTCTTCTACATGTTGCCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC091229.1 ENSRNOG00000059485 ENSRNOT00000079411 2 1 1 80 10 37482544 37482563 ACCTATCAACCTGACAAGCA 59 37482605 37484567 TCAGTTAACCGTGAATTGGG 58 Novel Rattus norvegicus 81 AC108312.1 ENSRNOG00000053031 ENSRNOT00000078283 3 1 1 80 14 80550936 80550956 CCCACCGTAATAATCTGCT 57 80551001 80551020 CGTGATATAGCATTCTGCCT 58 Novel Rattus norvegicus 81 SNORA55 ENSRNOG00000060932 ENSRNOT00000083013 3 1 1 60 8 13778718 13778736 GAGCAGAGGAAATCCAGAC 58 13778759 13778778 CGGAGTTATAGAGACAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052812 ENSRNOT00000078659 1 1 1 60 8 48825745 48825766 TTTGAAAGATACAGAGTGTCCC 58 48825784 48825805 GGTTAAGTGCTACTCAAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060943 ENSRNOT00000079220 1 1 1 60 8 99954084 99954102 CTTAGGAGCACTGCAAGTG 59 99954042 99954060 CCCTCACTGCCATCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008319.1 ENSRNOG00000056627 ENSRNOT00000080851 2 1 1 85 2 52855839 52871470 GTCCAATGGGTTGAGAGCT 60 52871519 52871537 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AABR07071819.1 ENSRNOG00000041639 ENSRNOT00000063392 1 1 1 60 8 132768304 132768327 AGGACATTAGAAGAAGGAAGACTC 60 132768346 132768364 TTACTCAGTCCCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041865 ENSRNOT00000063618 2 1 1 60 8 122345812 122345834 CCAATCTCATCTGATTTCAGGAC 59 122345853 122345872 TTCCTGTTCAAGTACTAGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057413 ENSRNOT00000089787 2 1 1 60 8 49084540 49084561 ATAACGCAGAGATTAACACAGC 59 49084501 49084521 ACAGAATGCTTCATGACTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024722.1 ENSRNOG00000056897 ENSRNOT00000080161 2 1 1 80 16 12662096 12662115 ATGGCCATTTACTCAAAGGG 58 12661910 12662054 GAAACCTTCTCATCCAGGTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060214 ENSRNOT00000090465 3 1 1 60 3 111075491 111075515 CTGCATATACTATCACTGGAAAGAC 59 111075530 111075551 TATGTCATTCTTTCACAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051794 ENSRNOT00000091997 2 1 1 60 3 160272667 160272687 CGTCAGTAAGTGACAGAAGAG 58 160272708 160272727 ATGTTCATAGAGCAGAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060569 ENSRNOT00000077267 2 1 1 60 3 72885458 72885476 GAGCAGAGGAAATCCAGAC 58 72885416 72885434 CAGAGTTGTAGAGACAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026424.1 ENSRNOG00000038106 ENSRNOT00000019033 1 1 1 60 16 75874371 75874393 GTGATTATAGAGCGATACAAGGG 59 75874333 75874351 GGAACTTGGTCTTGTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059174 ENSRNOT00000084125 3 1 1 60 3 140565414 140565435 ATACAGAGAAGATTAGCATGGG 58 140565455 140565474 GGGACGTTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061411 ENSRNOT00000082625 3 1 1 60 3 109824035 109824053 CTCTCAGGATGAGCTGACC 59 109823993 109824012 AAATTATGCAGTCACGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061634 ENSRNOT00000079099 1 1 1 60 16 76183759 76183778 TGGGTCAGTAGGTAACAGAG 58 76183799 76183819 TTCACAGATCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014875.1 ENSRNOG00000058665 ENSRNOT00000088185 2 1 1 80 14 34905939 34906493 CATGTTCCAAAGGTCGTGAC 60 34906532 34906554 GGGATAATTAATCGTCTGGAGGT 60 Novel Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000080427 1 1 2 80 14 36590954 36590973 TACCAATGCCCATATTGTCC 58 36590452 36590913 CAGATTCTTGACCCAGTAGAG 58 Novel Rattus norvegicus 81 AABR07014897.1 ENSRNOG00000052390 ENSRNOT00000091721 3 1 1 81 14 36889986 36890202 GAAGGTCAGGAAGATACTTATCCT 59 36889928 36889950 CTGACATTTCTACTCAGAGAAGC 59 Novel Rattus norvegicus 81 AABR07031393.1 ENSRNOG00000052995 ENSRNOT00000082044 3 1 1 81 18 12140976 12141513 GTACAGCTGCACTTCTTCC 59 12141557 12141576 TGAACTTTGGATCATGCCAC 59 Novel Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 1 1 1 68 14 44872774 44876788 ATCACCTCCCATAATCGCC 59 44872724 44872745 GTGGGATATAATTTACTCCGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062775.1 ENSRNOG00000054672 ENSRNOT00000084160 2 1 1 107 6 7395656 7416110 CTTCTCTTTGGGCTTGGGA 60 7395567 7395586 GATTCTTGCTCCAGCTTCTC 59 Novel Rattus norvegicus 81 AC111831.1 ENSRNOG00000054592 ENSRNOT00000077392 3 1 1 80 6 8176334 8201778 TCTTAGTCGTCAAGTATGTGCT 59 8176275 8176297 GTCAGGGAAACAAAGGTAAAGAG 60 Novel Rattus norvegicus 81 AABR07015517.3 ENSRNOG00000061322 ENSRNOT00000091758 3 1 1 80 14 61101631 61111918 GACATTTGAGGTGGTTGGTG 60 61111958 61111979 AATCTCTTCTTTCACCCAAAGG 59 Novel Rattus norvegicus 81 AABR07047174.2 ENSRNOG00000057656 ENSRNOT00000090094 1 1 1 83 5 22204373 22205541 GGAACCCAGATTGAACTGTG 59 22205586 22205605 ATATTGGTTGCGCAAATTGG 58 Novel Rattus norvegicus 81 AABR07015517.2 ENSRNOG00000058688 ENSRNOT00000078204 2 1 1 61 14 61116719 61116738 TAAGCCTGCCAAATCCTAGG 60 61122446 61122464 ATTAGGCCTTCTCCACGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 2 1 1 60 5 24974448 24974467 ACAGGCTATGAACTTTGTGC 59 24970312 24974429 GACCTTTCCTGATGAATGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015648.1 ENSRNOG00000057570 ENSRNOT00000081907 1 1 1 95 14 68704181 68704199 GAATGAAATGGAGGGCGTG 59 68699040 68704122 ATCTGAAAGCAGCTTGGGT 60 Novel Rattus norvegicus 81 AABR07015652.1 ENSRNOG00000054995 ENSRNOT00000084963 1 1 1 74 14 68796351 68796372 CCTGTGAAACAATCTTAGGGAG 59 68790468 68790486 GTCCTCTGCACGATTACGT 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102550206 ENSRNOG00000058088 ENSRNOT00000088269 3 1 1 83 1 14508054 14508072 CTGTAGTAGGCTTGTGGCA 59 14508118 14508427 GTGCCACTGATTATGTCTGG 59 Novel Rattus norvegicus 81 AABR07015917.1 ENSRNOG00000052037 ENSRNOT00000083054 1 1 1 80 14 86100200 86100219 ATGGATGCTAGGGTTGACTG 60 86100258 86100578 GAGAGTACATCTCAGTGTATGCA 60 Novel Rattus norvegicus 81 AABR07015942.1 ENSRNOG00000057726 ENSRNOT00000078849 2 1 1 87 14 87140446 87140464 GTGATTCCAACGTGGTCAG 59 87141745 87141763 CTCATGAGAGCTGTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073038.2 ENSRNOG00000059100 ENSRNOT00000090348 1 1 1 80 4 118329828 118330537 CAATACGCTGGAGACAGAG 58 118330579 118330599 AGATACAGATTCCATCCTGTG 57 Novel Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 2 2 2 118 10 88568178 88568196 GCAACATCCAGCTGAACTC 59 88567743 88568096 TATGGAATACCCTGGCCCT 60 Novel Rattus norvegicus 81 AABR07061390.1 ENSRNOG00000054278 ENSRNOT00000089766 1 1 1 73 4 121179477 121179495 GATCTTCCCAGTGTCCAGG 60 121182797 121182815 TTATCCTGTGGCACAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061390.1 ENSRNOG00000054278 ENSRNOT00000089766 3 1 1 74 4 121179476 121179494 AGATCTTCCCAGTGTCCAG 58 121182797 121182815 TTATCCTGTGGCACAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.2 ENSRNOG00000053962 ENSRNOT00000081928 1 1 1 80 10 93181114 93181133 TTCTAAGCAACATGGGAGTC 58 93181176 93182201 TATTGTCAGCACTGATGGG 57 Novel Rattus norvegicus 81 AABR07000714.2 ENSRNOG00000057722 ENSRNOT00000085871 1 1 1 83 1 24077107 24081557 CTTGAACACGGAACAACGG 60 24081604 24081622 ACAAGTGATCTGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07000714.2 ENSRNOG00000057722 ENSRNOT00000085871 3 1 1 90 1 24077107 24081557 CTTGAACACGGAACAACGG 60 24081611 24081629 TCTGGCCACAAGTGATCTG 60 Novel Rattus norvegicus 81 AABR07016589.1 ENSRNOG00000052148 ENSRNOT00000083675 3 1 1 87 14 105480737 105480758 AAGCCAACAGAACTTAAAGGTG 60 105480803 105484644 GGCAAATTCAAGAACCTTATGC 59 Novel Rattus norvegicus 81 AABR07016674.1 ENSRNOG00000055024 ENSRNOT00000082749 1 1 1 104 14 110103162 110234049 CTTATCACGTGGGAAGCTG 58 110103076 110103094 ATCAGAGACCTGTGCTGTC 59 Novel Rattus norvegicus 81 AABR07016672.1 ENSRNOG00000053953 ENSRNOT00000079374 3 1 1 95 14 110126476 110163490 TCTTATGCCAGGTGATGCC 60 110163549 110163567 GATGTTGATCCAATGGGCG 59 Novel Rattus norvegicus 81 AABR07001003.1 ENSRNOG00000053180 ENSRNOT00000081840 2 1 1 81 1 32453944 32475690 CACAGGAGATGCAGAGGAG 60 32475735 32475753 GATGGTGAAGGTCGTTGTG 59 Novel Rattus norvegicus 81 AABR07049148.1 ENSRNOG00000055285 ENSRNOT00000089642 1 1 1 80 5 107586008 107586825 AAACCATCAGTACTGGTGAC 58 107586868 107586886 ATTTGCTGGAGATGCTGTC 58 Novel Rattus norvegicus 81 AABR07030690.1 ENSRNOG00000059096 ENSRNOT00000089444 1 1 1 60 10 99771483 99771501 TTAGATGTTCAGCCCTGGG 59 99731179 99731197 GGCCAGTTGTCAAATTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062068.1 ENSRNOG00000058192 ENSRNOT00000091238 2 1 1 76 4 160206120 160206138 CTCAGGCATCGAGATCGAG 60 160207333 160207352 GGCGTATATTTGCAGTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017176.1 ENSRNOG00000057844 ENSRNOT00000084363 2 1 1 80 15 15159563 15185089 TGCTAACGATGAAAGGAACC 58 15159502 15159520 TATGTCACAGGTGGTAGGG 58 Novel Rattus norvegicus 81 AABR07062111.2 ENSRNOG00000057585 ENSRNOT00000087809 2 1 1 81 4 161461619 161476136 AAGGACTGGAAGAAGACTGG 59 161461557 161461578 CAAATACCATCTCTGTTCCCTG 59 Novel Rattus norvegicus 81 LOC103692434 ENSRNOG00000058853 ENSRNOT00000083620 1 1 1 80 5 126222803 126222821 TTAAGTCCTGCATCCAACC 57 126222865 126223546 AGGAGATCACTTGGTGAGG 58 Novel Rattus norvegicus 81 AABR07062329.1 ENSRNOG00000051629 ENSRNOT00000087030 2 1 1 70 4 169280816 169280834 CTCAACCTGACCTTCCCAG 60 169287030 169287048 GATGATCACTGCTCTGCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030939.1 ENSRNOG00000061691 ENSRNOT00000086613 3 1 1 80 10 110125576 110125594 TCCAGGTGAAATTGCTCAG 58 110125636 110126716 ACGTCTCCAAACAAAGTATCC 58 Novel Rattus norvegicus 81 AABR07045658.1 ENSRNOG00000055472 ENSRNOT00000086208 3 1 1 81 20 55724651 55729674 AGGAGATCATTAGCTGATGAGTG 60 55729709 55729733 GCCATGATACATCAATAGGAATCTG 60 Novel Rattus norvegicus 81 AABR07017491.1 ENSRNOG00000059269 ENSRNOT00000079751 3 1 1 84 15 23381793 23381811 CAGACATTTCACCTCCCAG 58 23381859 23382065 GATCATCAAGCCCTCTGTC 58 Novel Rattus norvegicus 81 AABR07017513.1 ENSRNOG00000060872 ENSRNOT00000080915 1 1 1 103 15 24879554 24879573 CTGAACTTGAACTGGGAACC 59 24879637 24888361 GGTAACCTATTCCAGGGTCTC 59 Novel Rattus norvegicus 81 AABR07031533.2 ENSRNOG00000052914 ENSRNOT00000084983 1 1 1 80 18 18301449 18301472 AACTAACTGGATACCTGAGAAGAG 60 18292170 18301415 GGATGCAAGGTAAAGTATCTATGC 60 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 1 1 1 60 5 132777766 132777785 ACATCAAGCTCATGTCACTG 58 132777804 132791315 GCTTCACCTCTAGGTAAATATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 1 1 1 108 5 133890144 133892881 TCCCACCTTGTTTCACAGG 60 133890054 133890072 TCCTGTCTCAGTCTTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.3 ENSRNOG00000053613 ENSRNOT00000080716 3 1 1 84 4 181705791 181706403 ATGTGCTTGTAAGCAGATGTG 59 181706449 181706467 AAACTGTCCTTGGAAGCGT 60 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 3 1 1 66 5 143851531 143851550 GACAGAAGGATCCAGAAGAC 57 143851577 143852416 CTTTACTGGTAAGGCAGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031931.1 ENSRNOG00000058859 ENSRNOT00000084025 1 1 1 80 18 39757016 39757037 GCAGAGTGTAGAGGATAAAGGA 59 39754671 39756977 AGTGGCAGAAGTAATTCACCT 60 Novel Rattus norvegicus 81 AC116285.1 ENSRNOG00000052566 ENSRNOT00000081190 2 1 1 81 15 34098505 34100425 ACATTGTTCCCAAAGAACCC 59 34100467 34100487 CTTCCATCCTTCTTAGACCAC 58 Novel Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 3 1 1 104 6 26142095 26145366 TTTGAGGCACTGTCTCAGAG 60 26145433 26145451 TCTACAGAGCAAGTTCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 2 1 1 60 6 32359990 32415000 CTTATAAGCTACATAGTGCCAGG 59 32359952 32359971 TAAGCAAAGGCAGGAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063509.1 ENSRNOG00000052377 ENSRNOT00000085423 3 1 1 89 6 32440842 32460203 CATTCTCCAGAGCTGGAGAG 60 32440772 32440790 TACCTTCGAGCATCTGTGC 60 Novel Rattus norvegicus 81 AABR07001699.1 ENSRNOG00000052700 ENSRNOT00000077249 3 1 1 85 1 55356222 55359260 CTGGAAGGACTGAGGATCC 59 55356155 55356174 TGCACTCTGTTCATTCATGG 59 Novel Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 1 1 1 76 18 49224722 49224740 TTTGTTGTGTCAGGCACTG 59 49223973 49224682 TTCTGGTGGGCTCATAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC133821.1 ENSRNOG00000055279 ENSRNOT00000084603 3 1 1 80 5 154372330 154372348 GAATCTGCTGAGGTTAGCC 58 154363539 154372286 GCGAAGGTTCTGTAATCCA 58 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 2 1 1 80 5 157140520 157141221 CACAGAAAGCAGTGGTTGG 59 157141264 157141283 CTTCAGGCAAGATGGATCCA 60 Novel Rattus norvegicus 81 AABR07018198.2 ENSRNOG00000057138 ENSRNOT00000081990 1 1 1 94 15 46523031 46527884 CTATATGGTCCTGGCTCCAG 59 46527941 46527959 AGAGGAAGTGACAGTCGTG 59 Novel Rattus norvegicus 81 AABR07018198.1 ENSRNOG00000055062 ENSRNOT00000077737 3 1 1 80 15 46537666 46537684 CTCTACTGGGAGGTGAGAG 58 46537727 46547647 GTAAGGCATCATGTTCCAGG 59 Novel Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 3 2 2 81 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199563 CTTCCCTGAGAAGTGAATTGC 59 Novel Rattus norvegicus 81 AABR07018262.2 ENSRNOG00000054573 ENSRNOT00000085802 3 1 1 84 15 49540516 49540535 TGGCAGTCATATTTGTGGTG 59 49539432 49540469 GGTGGTAGCCTCTGAACTC 60 Novel Rattus norvegicus 81 AABR07018269.2 ENSRNOG00000052066 ENSRNOT00000085504 2 1 1 85 15 49614119 49619469 TCTCCAGTTCCAGCAAGTG 60 49614052 49614073 CGCAATGGATGAAGTCTTATGG 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 2 1 1 69 1 64235372 64236934 GTCACTAAGCAGACACAGG 58 64236967 64236985 AACTTGTCTGCTTTGACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 2 1 1 87 5 161523026 161523045 GCATTCATACAGGGACATCC 59 161523095 161524687 TACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AC141168.1 ENSRNOG00000061481 ENSRNOT00000079896 3 1 1 80 15 51097947 51103212 ACTTCTTTCCCATGCTTTAGTG 59 51097888 51097907 GTGCATCATTTCCACTGACC 60 Novel Rattus norvegicus 81 AABR07002010.1 ENSRNOG00000056327 ENSRNOT00000087034 2 1 1 82 1 64818706 64829986 GGAGTAAAGTAAGGGATGTTCTG 59 64818646 64818667 TTCAGAGGGATAACTGAATCGT 59 Novel Rattus norvegicus 81 AABR07063654.2 ENSRNOG00000056738 ENSRNOT00000078812 2 1 1 65 6 39982734 39982753 CTTGCCAGCCCAATATTCTC 59 39981947 39981965 TTGAGAGGATGACTCTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063654.1 ENSRNOG00000051754 ENSRNOT00000080278 1 1 1 94 6 40140391 40140413 GTCAGATAGAAGACTTCTACACC 58 40137560 40137579 GTTTCCACAATTTCTCCCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032289.1 ENSRNOG00000053900 ENSRNOT00000091628 1 1 1 81 18 59815367 59815385 ATTGGAGGTGTTGGGAGTC 59 59817053 59817071 TTTGTCTGGGTCAAGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032289.1 ENSRNOG00000053900 ENSRNOT00000091628 2 1 1 82 18 59815367 59815385 ATTGGAGGTGTTGGGAGTC 59 59817053 59817072 CTTTGTCTGGGTCAAGTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063682.1 ENSRNOG00000060065 ENSRNOT00000078200 3 1 1 81 6 41751481 41773177 GCATAGGCTGAGCATATGTG 59 41751419 41751441 TATATCCAGACTATAACACGGGC 59 Novel Rattus norvegicus 81 AABR07018503.2 ENSRNOG00000058815 ENSRNOT00000084849 1 1 1 82 15 62248565 62248584 CAATCAAAGACCACCTTCCA 58 62232226 62248520 TTCTCTGAGCCAAGAGGTG 59 Novel Rattus norvegicus 81 AABR07063743.2 ENSRNOG00000054777 ENSRNOT00000083510 1 1 1 80 6 45470733 45470752 GGATCGAGTGTTCAAATGCC 60 45469157 45470696 CTATAAAGACCTCTGATGGTTACTG 59 Novel Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 1 1 1 65 18 67748230 67748249 TGTCACTCCTGTCATTTGTC 58 67695169 67748202 TCTGGACTCAAGATGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002677.2 ENSRNOG00000060041 ENSRNOT00000081418 1 1 1 104 1 80378583 80378601 ATCCCTGGCAGAAAGACTG 59 80378669 80382571 ATCTCCAGCACTGACAGTG 59 Novel Rattus norvegicus 81 AABR07051177.1 ENSRNOG00000058456 ENSRNOT00000084345 3 1 1 80 3 8727 8747 AAACTCTTCTGGCAAATCACC 59 8788 10097 CCTCTTGATGCATTATCGCA 59 Novel Rattus norvegicus 81 AABR07018837.1 ENSRNOG00000059235 ENSRNOT00000088967 1 1 1 80 15 75319066 75331266 GAATAAACGGTTACATGAGGC 58 75331305 75331326 TAACTGGAAATGTAGTTCCTGG 58 Novel Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 3 1 1 71 15 84004961 84004981 AGATCTACATCCATCTTGCCT 59 84005013 84009871 GGAGCAATGCAAACTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064131.1 ENSRNOG00000059696 ENSRNOT00000085271 1 1 1 80 6 65779384 65782283 TGAGGAAATTGAAGAACTCTGG 58 65782323 65782342 ATAAATCAGTGCCGAGTCAG 58 Novel Rattus norvegicus 81 AABR07051332.1 ENSRNOG00000053371 ENSRNOT00000090398 3 1 1 131 3 4988254 4988272 TATGTGCAGCTCAACATGC 59 4988614 4988632 TTTCAGAGACAGCACTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051376.1 ENSRNOG00000057465 ENSRNOT00000087557 2 1 1 60 3 7033382 7033401 TTGACTCAGACCCTTCACAG 59 7033422 7033442 GGGACCTACTACAGAAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019254.2 ENSRNOG00000060194 ENSRNOT00000079870 2 1 1 80 15 96817445 96817465 ATAAAGGCAGAGTCTGTTGAC 58 96790502 96817406 TTAGCTGGAGGGATCTATAGAG 58 Novel Rattus norvegicus 81 AABR07051400.2 ENSRNOG00000059495 ENSRNOT00000085689 3 1 1 82 3 9333285 9333680 ATACTGGAGCCAATGGACC 59 9333221 9333240 TGAAGTGTTGAAACTGCAGG 59 Novel Rattus norvegicus 81 AABR07064373.1 ENSRNOG00000059292 ENSRNOT00000088398 2 1 1 80 6 77378728 77394035 TGAATACTGCTCTGGGATCAG 59 77378668 77378686 CGAACCTGACAGAGAAGGG 60 Novel Rattus norvegicus 81 AABR07032787.1 ENSRNOG00000052546 ENSRNOT00000088794 2 1 1 81 18 82089109 82108783 GTAACTGTTGACCTCTACTGTC 58 82108823 82108843 CTCTAGATGGACTCCATCCAC 59 Novel Rattus norvegicus 81 AABR07003007.1 ENSRNOG00000060688 ENSRNOT00000084795 3 1 1 64 1 92926571 92926590 ATCTTGATCCCTGACAGCAG 60 92926617 92927807 TTTCTGCTGTGGAAACTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07032816.1 ENSRNOG00000056823 ENSRNOT00000086996 3 1 1 66 18 84010730 84017955 CATGACAACATACGGCTGG 59 84010682 84010700 AACGTTGTTTGCAGAGGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07064840.1 ENSRNOG00000061310 ENSRNOT00000088224 2 1 1 93 6 97456282 97457244 ATGAGACAACTGAACGGCT 59 97457300 97457319 TCTTCTGAATGAGCTGCTCC 60 Novel Rattus norvegicus 81 AABR07064867.2 ENSRNOG00000051551 ENSRNOT00000084980 3 1 1 86 6 98696932 98714075 TCACTCATCACGGAAATCCA 59 98714124 98714142 GCTTCAGTGTTCCCAAGTG 59 Novel Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 2 1 1 88 3 22636574 22637558 ACACGCAGGGATGTTACTC 60 22636504 22636524 CAAAGGCTGTAGAAATCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 2 1 1 83 13 35886853 35887288 AAGACATCACCAGCAGGTC 60 35886788 35886806 TCTTTCCATTCTGCACGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051831.1 ENSRNOG00000015854 ENSRNOT00000021237 2 1 1 69 3 23762821 23762841 AGCAAGGTTTACTGAAGTGTC 59 23769032 23769050 TGGGACAGAATTTGGAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020859.1 ENSRNOG00000056388 ENSRNOT00000089001 2 1 1 80 13 43748994 43749013 CTGGTAAGACATGAGAAGCA 57 43749053 43773098 CAGCTTCTCCCTTACTATTCTC 58 Novel Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 2 1 1 60 6 110258883 110258901 CCAACACTTCACAGAAACG 57 110258329 110258859 AGGGACCCAGAATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 2 1 1 80 13 50809453 50810025 AACAGGAAGGGTAGAATTCCA 59 50810066 50810085 GTGAACAAGTATGGCCTTGG 59 Novel Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 1 1 1 62 3 36633391 36633410 CCGTGACTTTCCATAATGCT 58 36581248 36633366 AAGGGTTTAACCAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021018.2 ENSRNOG00000059794 ENSRNOT00000078481 2 1 1 80 13 53649159 53649177 CAGGCGACAAATACAGAGC 59 53649220 53651986 AGCTTTCTGCAGGTAAACAG 59 Novel Rattus norvegicus 81 AABR07052322.1 ENSRNOG00000061267 ENSRNOT00000086972 2 1 1 81 3 47554631 47554649 CCTCATCGTCCTAGTCCAG 59 47552675 47554588 GACTGTCTAGACAACATAGGC 58 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 3 2 2 87 9 604682 605043 TGTACTTGCTCTCCTGGAC 59 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07003468.1 ENSRNOG00000058191 ENSRNOT00000082080 2 1 1 84 1 110995837 111001832 CAGAAATGCAGAGAATTCCAG 57 111001877 111001896 CACATTGTACACAAGCACAG 58 Novel Rattus norvegicus 81 AABR07052452.1 ENSRNOG00000059803 ENSRNOT00000078191 1 1 1 81 3 54949322 54949341 AGACAGGGATCCTTACACTG 59 54948370 54949278 ATCTGGAGTCGGAACACTC 59 Novel Rattus norvegicus 81 AABR07065348.2 ENSRNOG00000055490 ENSRNOT00000083586 2 1 1 80 6 123092123 123092476 TACGCAAAGAACAGAAGGG 58 123092520 123092538 TGAGACAACAAGACCTTCC 57 Novel Rattus norvegicus 81 AABR07065348.1 ENSRNOG00000054396 ENSRNOT00000092058 3 1 1 80 6 123108565 123109600 CATCTCCAAGATGTCATATGAAGAC 60 123109638 123109656 TGGTTTGGAAGGATGACCA 59 Novel Rattus norvegicus 81 AABR07034293.2 ENSRNOG00000052632 ENSRNOT00000089170 1 1 1 81 11 62943409 62949854 GGTAGACAAGAAAGGTGCT 57 62943346 62943365 TGAACCTTTCTTGTCTACCC 57 Novel Rattus norvegicus 81 AABR07034457.1 ENSRNOG00000057765 ENSRNOT00000081844 1 1 1 74 11 72625590 72625608 CACTTAAAGCCTTGGCAGC 60 72639207 72639227 GGACTTGTATTTGTAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034573.2 ENSRNOG00000056536 ENSRNOT00000085341 3 1 1 80 11 79092008 79093435 TCAAGGACCATACAGATGACC 59 79093474 79093495 ATATGCTCACCTTTAAAGGCTC 59 Novel Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 3 1 1 60 3 66075105 66080120 GGAAGAACATCCACTACATACTC 59 66075067 66075086 CAGTGTAGACCTGACACCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021760.1 ENSRNOG00000059079 ENSRNOT00000079623 1 1 1 63 13 90160403 90160421 TACAGGATCTCTGCTCCTC 58 90167168 90167189 ATCAGATCACTAGTCGAATCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 1 1 1 92 11 83801330 83814221 AAATCATGGCCTGAAGCTG 59 83814277 83814295 ATTATTGCCCTGCCATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052686.1 ENSRNOG00000060480 ENSRNOT00000086000 3 1 1 129 3 69246656 69267730 GAGACTCCTGAGAGGTGGA 60 69246545 69246565 CTGCAGTTTCTTTCTCAAGCA 60 Novel Rattus norvegicus 81 AABR07065476.2 ENSRNOG00000061068 ENSRNOT00000088039 3 1 1 60 6 130187200 130187219 GAACAGTTGGTAGACAGTCC 58 130186714 130186732 CATGATTTGCTCTGGAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072264.3 ENSRNOG00000058902 ENSRNOT00000082278 2 1 1 80 11 86926581 86926600 CAGTGACAGGAAGTTGACAG 59 86926642 86926975 ACAGACGATTTGCTATCTGG 58 Novel Rattus norvegicus 81 AABR07034750.1 ENSRNOG00000060228 ENSRNOT00000090971 2 1 1 90 11 87346238 87346257 AGAATGGACCTGTCTTTGCA 60 87346310 87355144 ACAATGTCACCAACCTCCA 59 Novel Rattus norvegicus 81 AABR07034761.2 ENSRNOG00000055545 ENSRNOT00000089264 1 1 1 80 11 88542921 88542941 CAGATTAGTCACCCGTTTAGG 58 88542466 88542882 ATGATCAATCCTGGATGATGTG 58 Novel Rattus norvegicus 81 AABR07034991.1 ENSRNOG00000057612 ENSRNOT00000090701 3 1 1 80 12 2938840 2940283 GTTGGACTAAACTCCCTGTG 58 2938779 2938799 GTAACAGTTTCCACTGTCGAG 59 Novel Rattus norvegicus 81 AABR07065600.1 ENSRNOG00000059736 ENSRNOT00000082819 1 1 1 80 6 136898854 136898872 GGAATCTTGGCTGACTGGA 59 136898914 136899495 AGCGAATAATGATCTTTGCCC 59 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000085939 2 1 2 80 3 83082222 83134230 AGGATTTCCAGGAACTTCAC 58 83082161 83082179 TCATTTGCTTCATCCAGCA 58 Novel Rattus norvegicus 81 AABR07022055.1 ENSRNOG00000061655 ENSRNOT00000077089 2 1 1 89 13 104672044 104673253 ATTGTGTTAAGTGGCAGCAG 59 104673305 104673323 TGATTCCCGATCCTCTTGC 60 Novel Rattus norvegicus 81 AABR07022056.1 ENSRNOG00000056806 ENSRNOT00000078696 1 1 1 80 13 104806683 104806701 CTGAGGATCACAGAGCAGG 60 104806745 104806763 TGTCTGGACTTGTGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.3 ENSRNOG00000051722 ENSRNOT00000077867 3 1 1 106 6 140608590 140608692 CATTTCCAAGCTGTGTCCT 58 140608502 140608520 TGAGAAGCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 1 1 1 84 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470449 105472703 GTGTTTGGCGTTATCCTGG 59 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 2 1 1 85 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470448 105472702 AGTGTTTGGCGTTATCCTG 58 Novel Rattus norvegicus 81 AABR07065818.1 ENSRNOG00000055835 ENSRNOT00000071313 2 1 1 60 6 142757313 142757334 AGCTTTGTCTTTCTCTTCTTCC 59 142757195 142757213 GCAGTTGAACTTCGGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776,ENSRNOT00000078681 3 2 2 88 6 143749809 143749911 TCCCTGCATATGTCTTGTCC 60 143749740 143749758 AGAGCAAGTCAGGCTTAGG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000078698 3 1 2 81 1 141944963 141944981 CTCAAGGACGATGTCTGCA 60 141945024 141945857 CTTTCTTCTTTGACCTGTGCT 59 Novel Rattus norvegicus 81 AC114460.2 ENSRNOG00000058477 ENSRNOT00000078130 2 1 1 71 1 142134733 142134751 TTGGATGAACCTCGCTCAG 60 142134504 142134524 CGTGTAGTCTGACACAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 1 1 1 60 9 4621542 4622735 AAAGGAATTGTGGGTGATTGG 59 4622755 4622775 CATCAAACCTCTCATTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537,ENSRNOT00000078486 1 2 2 90 3 108624645 108640202 CAAGTAGCACGATGTGGAG 58 108624573 108624591 TCAAACAGTCCTTTGCAGC 59 Novel Rattus norvegicus 81 AABR07035506.1 ENSRNOG00000059429 ENSRNOT00000088655 3 1 1 101 12 18421366 18421384 CCCATCTCATTCACAGAGC 58 18419681 18421302 GAGTTGGGTGTAACTGAAGG 58 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 2 1 1 66 1 147424475 147424496 GCCACTTTCTAGATGAGAATGG 59 147423413 147424448 TTTCCTGCTGAGAAAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066636.1 ENSRNOG00000052783 ENSRNOT00000085782 2 1 1 80 9 12068260 12068867 CTAGCATTGACAGGAACATCTC 59 12068908 12068926 GCATGTTCAGGATATCCGG 58 Novel Rattus norvegicus 81 AABR07004703.1 ENSRNOG00000051996 ENSRNOT00000085870 1 1 1 80 1 151211013 151211031 GGAATTCCAAGCTACAGGG 58 151211072 151216428 CATCCTGTTTGTTTAGCTAGAG 57 Novel Rattus norvegicus 81 AABR07053516.2 ENSRNOG00000060187 ENSRNOT00000077223 1 1 1 66 3 112330371 112330389 GAAGTGAACAACGGACACC 59 112333356 112333377 CGTTAGAAGCTTAAGAGTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07035650.1 ENSRNOG00000061750 ENSRNOT00000087357 3 1 1 96 12 20785586 20832374 AGAGAAACAGGAAGGGATCAC 60 20785510 20785528 CCATGGTGAGAGGTCATGG 60 Novel Rattus norvegicus 81 AABR07004823.1 ENSRNOG00000053655 ENSRNOT00000079979 3 1 1 98 1 159635514 159635534 GATAGCAAAGGCTATATGCCC 59 159634134 159635456 ATATCTTTGCCTCATTGTGCC 59 Novel Rattus norvegicus 81 AC133383.1 ENSRNOG00000060876 ENSRNOT00000084549 3 1 1 86 1 162733388 162733670 GGGATAGTTTCTGATTCTTGGA 58 162733717 162733735 TCCTTTGCTCATGTACAGC 58 Novel Rattus norvegicus 81 AABR07024875.1 ENSRNOG00000053348 ENSRNOT00000080272 1 1 1 76 16 20362912 20362930 CCAGGAACAGCTCTGATCC 60 20361557 20361575 GAACACCATAGCATGTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 3 1 1 81 12 22362443 22362863 CCGAAATCACTCTGCAGTG 59 22362907 22362926 TCCAAATTGGAACAGGAAGC 59 Novel Rattus norvegicus 81 AABR07035782.1 ENSRNOG00000057201 ENSRNOT00000087948 1 1 1 80 12 22386804 22386823 TGTGACTTTGGTTATGGAGG 58 22386866 22388592 TAAGCTGGATGCTTCTAGC 57 Novel Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 2 1 1 64 12 22601987 22604866 GTGGGTTTCAAGAAGCCAG 59 22604893 22604912 TAAACTCACACCTATGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053850.1 ENSRNOG00000059311 ENSRNOT00000081306 3 1 1 97 3 130962637 130962656 CCATTTCCTTGCTTCCTACG 59 130962711 130964789 TTATCATGATCCGGTAGATCTGTC 60 Novel Rattus norvegicus 81 AABR07035868.1 ENSRNOG00000056105 ENSRNOT00000078623 2 1 1 81 12 26242358 26246061 TGTAGCTCTGAGTGTTATACTCC 59 26246102 26246120 CAGCTGGTCTTTGGATGGA 60 Novel Rattus norvegicus 81 AABR07025386.1 ENSRNOG00000052230 ENSRNOT00000080111 2 1 1 101 16 36297242 36297261 GAAGATGGGTGAGAGTTTGC 59 36295562 36297178 GTTAGCTTCTCCGGACCTC 60 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000084175 1 1 3 94 3 142319180 142319198 AACTCCACCATGGCTAGAG 59 142280709 142319124 CAGGATAAACTTCAATGCCCT 58 Novel Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 3 1 1 98 16 51791908 51791927 CTCTTCTACCACACCAACCA 59 51791096 51791847 TTTGCAGAGACATTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 3 1 1 62 12 33687323 33687344 CCATCCTTTCTAAATTCAAGGC 58 33686612 33687301 TGATCAATCACTGGACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072936.1 ENSRNOG00000059752 ENSRNOT00000089535 1 1 1 109 3 148132297 148132315 GAACAACGCTGTAGCTCTC 59 148131686 148132227 CAAGATGATTTCATCAACGGTG 58 Novel Rattus norvegicus 81 AABR07005758.1 ENSRNOG00000057349 ENSRNOT00000086583 1 1 1 91 1 196399107 196415135 TATGTCTGAATCAAGGTCTCTGG 60 196399038 196399059 GCAGCTAGGATTTAACCATGTC 60 Novel Rattus norvegicus 81 AABR07067405.1 ENSRNOG00000055425 ENSRNOT00000089959 3 1 1 80 9 43503763 43503929 ACACAGTAGATATAGAGGATACGC 59 43503963 43503986 CTCTACATCTATGGTGTACTCCTC 60 Novel Rattus norvegicus 81 AABR07067456.1 ENSRNOG00000058462 ENSRNOT00000086954 3 1 1 123 9 46890409 46890428 GTAACTGAGAACTGCCAGAG 58 46890514 46891220 TGAAGTTGACACAGCTTCC 58 Novel Rattus norvegicus 81 AABR07067501.1 ENSRNOG00000057874 ENSRNOT00000089189 3 1 1 81 9 49510110 49510715 AAAGCTGGTTTGAGTCTCAG 58 49510759 49510777 CCAATCTGTGAGACTCTGC 58 Novel Rattus norvegicus 81 AABR07026032.1 ENSRNOG00000054809 ENSRNOT00000079224 1 1 1 90 16 60015117 60015135 CCGAAGAGTGGAGAGTGTG 60 60011996 60015063 TGAGGCCACAATCCTTCTC 59 Novel Rattus norvegicus 81 AABR07026032.1 ENSRNOG00000054809 ENSRNOT00000079224 2 1 1 101 16 60015128 60015146 AGATGAAGTGCCCGAAGAG 60 60011996 60015063 TGAGGCCACAATCCTTCTC 59 Novel Rattus norvegicus 81 AABR07054487.1 ENSRNOG00000061326 ENSRNOT00000087135 3 1 1 80 3 156368659 156368678 AATGTCCAGTCAGAAGACAC 58 156368509 156368617 GTCAGACTTTCCCATCTGTG 58 Novel Rattus norvegicus 81 AABR07036413.1 ENSRNOG00000054311 ENSRNOT00000084328 1 1 1 61 12 42519289 42519308 GGGATCTCAGATACCAACCG 60 42518433 42518451 CATGACGGAGATGGAACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000084407 2 1 2 83 16 65194757 65194778 GATGGAGTTTCCCTATCAACTG 59 65194822 65254092 CACTTAGCGCTCCTTTCAG 59 Novel Rattus norvegicus 81 AABR07005955.1 ENSRNOG00000053950 ENSRNOT00000081722 1 1 1 80 1 208694325 208694343 TTGCAACTGTGAAGACCCA 60 208684241 208694281 ATGATGAGGCCTAAGCCAG 59 Novel Rattus norvegicus 81 AABR07036452.1 ENSRNOG00000058699 ENSRNOT00000088109 3 1 1 83 12 43658332 43658351 GAACTTTCTTGCCAGCTTCC 60 43658394 43658551 TTTCCCAACATCTGATGATTGG 59 Novel Rattus norvegicus 81 AABR07067775.1 ENSRNOG00000056531 ENSRNOT00000078499 2 1 1 81 9 63406269 63406287 ACGAGAAACCACTCTTCTG 57 63406331 63408030 AATCTAACACCTGGAGTGTG 57 Novel Rattus norvegicus 81 AABR07054565.1 ENSRNOG00000053069 ENSRNOT00000079564 3 1 1 81 3 160993305 160993323 CAGGCTTCAGGAAGATCAG 58 160993367 161013973 AGAGTGTCCTTCTCTTCCTC 58 Novel Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 2 1 1 60 12 46494668 46495869 AATACACTTAGAGCATCGGTAGG 60 46495888 46495907 TCAAACCTCCTCAAACCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 3 1 1 60 12 46494666 46495866 CAAATACACTTAGAGCATCGGT 59 46495887 46495905 AAACCTCCTCAAACCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC097575.2 ENSRNOG00000060790 ENSRNOT00000079447 3 1 1 62 12 46859496 46859514 CATTCACCAGTACCTGCAG 58 46858336 46858354 GAGATAGTTCCCGGGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026339.1 ENSRNOG00000061696 ENSRNOT00000086537 3 1 1 96 16 72698796 72698953 CAGTTCGGATGCTGTTACTG 59 72699012 72699030 TACTAGCTGAGGCACTTGC 60 Novel Rattus norvegicus 81 AABR07054662.1 ENSRNOG00000057226 ENSRNOT00000083036 3 1 1 84 3 166270481 166278485 CTGCTGAATTAAGCAACTCTG 58 166270417 166270436 TGTTGTCAGGATGAATGCAG 59 Novel Rattus norvegicus 81 AABR07036640.1 ENSRNOG00000054829 ENSRNOT00000085103 1 1 1 60 12 51366311 51366330 AGGAAGGCCTGTTAGAACAC 60 51362297 51362316 TGGATCAGGTTCCTCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054752.2 ENSRNOG00000056980 ENSRNOT00000086486 1 1 1 80 3 168634408 168634430 CTTCCTTGGCTCCATAAATTACC 60 168623833 168634368 AGAAACTGGGACACCTGTG 60 Novel Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933,ENSRNOT00000087244 1 2 2 60 9 71398076 71398094 TCCATGTTTGACAGCTTCC 58 71388832 71388852 CAGACTATCACATGGTTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006097.1 ENSRNOG00000057099 ENSRNOT00000086155 3 1 1 87 1 219755962 219758195 GGATTTCGAGTTCAAGGTCC 59 219755894 219755912 ATGGCTTAGCAGGACTGAC 60 Novel Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 1 1 1 60 13 108021431 108021450 AGATTTCAAGTGCTGTGGTG 59 108021473 108032585 CATTCCTGGGAGGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022108.1 ENSRNOG00000052739 ENSRNOT00000088993 2 1 1 80 13 108273603 108274869 CTTTCTCAGGATGTGTCCCA 60 108273542 108273562 ACCCTGATCTATAATGTCCCG 59 Novel Rattus norvegicus 81 AABR07022162.2 ENSRNOG00000058314 ENSRNOT00000087172 3 1 1 86 13 110554286 110554304 TCATTGTAGCAGCTTTGGG 58 110554354 110554798 TTATCTATTGGCTGCTGCC 58 Novel Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 3 1 1 61 1 229097609 229097628 GGACTTCTCATTGCAGACAC 59 229097650 229100203 CTTCTTGCTCCTTGAACAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 3 1 1 80 X 35154476 35154497 TAACGTCTATGGCAATATGCAG 59 35151746 35154438 TCCTGAAGAAATTCTCGGAGAG 60 Novel Rattus norvegicus 81 AABR07055162.1 ENSRNOG00000052669 ENSRNOT00000089774 3 1 1 92 7 241064 245331 ATAGTTCCTACCGCAACAC 57 240990 241009 GTTGTCTGTTCTCATTCAGC 57 Novel Rattus norvegicus 81 AABR07026539.2 ENSRNOG00000060874 ENSRNOT00000077531 2 1 1 78 16 82430270 82430288 CTTTACACTCCGCTCTCCA 59 82430425 82430443 ATTAGCAGAGGCATGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055885.1 ENSRNOG00000059026 ENSRNOT00000089438 1 1 1 80 7 14838379 14838397 TTTGACCCAGAAAGTCGTC 58 14838441 14838705 CTGTCCTATGCAGTTCCTG 58 Novel Rattus norvegicus 81 AABR07055885.1 ENSRNOG00000059026 ENSRNOT00000089438 3 1 1 80 7 14838377 14838395 GCTTTGACCCAGAAAGTCG 59 14838439 14838703 GTCCTATGCAGTTCCTGGG 60 Novel Rattus norvegicus 81 AABR07026565.2 ENSRNOG00000059439 ENSRNOT00000088632 1 1 1 60 16 83862315 83862335 CATCTAAGCTAGGGAGAAAGG 57 83862355 83862375 AGATACAGAAAGCAGTATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000077989 1 1 2 80 1 244421286 244540122 CTTTCCTCTTATGTCATGTGCTG 60 244421228 244421246 AGTTAGAGTGCAAGCAGGT 59 Novel Rattus norvegicus 81 AC098022.2 ENSRNOG00000054594 ENSRNOT00000081706 1 1 1 80 7 20106042 20106063 CATCTGTAGTGTGGATATCTGG 58 20103497 20104720 GAATAGGCATGACCTTTATTGG 57 Novel Rattus norvegicus 81 AABR07039236.1 ENSRNOG00000059710 ENSRNOT00000082144 2 1 1 80 X 72863010 72863030 AGGAATATTACGATTGCGACG 59 72859442 72862970 TCTTCTACACCATCTCCATGG 59 Novel Rattus norvegicus 81 AABR07056156.1 ENSRNOG00000061013 ENSRNOT00000081988 2 1 1 131 7 20629386 20629404 CATGAGTGTAGGAGAGCCC 59 20629496 20713759 AGACTGATTCTTGATGTAGCCA 59 Novel Rattus norvegicus 81 AABR07056200.1 ENSRNOG00000058241 ENSRNOT00000077916 2 1 1 113 7 21203519 21204243 AACTTCACCAGATGGTGCT 59 21203424 21203442 TGTCTTGCTGCTACTCAGG 59 Novel Rattus norvegicus 81 AABR07026704.1 ENSRNOG00000053217 ENSRNOT00000083978 1 1 1 83 16 90280281 90282431 GGGAGGAAGTTATAATGTACAAGC 59 90280221 90280239 GTGTAAACCATGGGTTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056422.1 ENSRNOG00000059037 ENSRNOT00000086387 3 1 1 103 7 24672147 24672166 ACTATTCCAGGCAGATGGTC 59 24672924 24672942 TACCTGCTCTATGCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC130862.4 ENSRNOG00000059363 ENSRNOT00000088098 2 1 1 86 X 105536536 105536554 GTATCTGTGGATCTCGCTC 57 105536601 105537311 CTTCTTGCAGATTTGATTCTGG 58 Novel Rattus norvegicus 81 AC096330.1 ENSRNOG00000052291 ENSRNOT00000081446 1 1 1 80 1 256934621 256935409 TTTGAACACAGGTTTGATCCC 59 256934561 256934579 CGTCACAATGGTGGTTCTC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 1 1 1 60 7 28372129 28372310 TTTGAAGGTTGACGACCTC 58 28372331 28372352 CACAAGATCTGGAGGTATTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068997.1 ENSRNOG00000060907 ENSRNOT00000080435 2 1 1 84 8 4785444 4785462 TTACCAAGCTACCAGGGAG 58 4738375 4785399 AAGCTTGGAGGTAATACATCAG 58 Novel Rattus norvegicus 81 AABR07006894.1 ENSRNOG00000051771 ENSRNOT00000091124 2 1 1 125 1 263013805 263013823 CTATGACATCCCTCGGGTC 59 263012463 263013717 GTTTCCGGTATCTTGTGCTG 59 Novel Rattus norvegicus 81 AABR07069067.1 ENSRNOG00000060166 ENSRNOT00000077688 1 1 1 65 8 6963066 6987213 TCTTTGCCCAGTTCAAGGA 59 6963019 6963037 TTTGTAGGCAGTCTGACAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 3 1 1 63 7 36160461 36160479 AAATCCATCCCTCAAGCCT 59 36160504 36164761 TCATTACACAAGGAGGAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069186.1 ENSRNOG00000060057 ENSRNOT00000077533 1 1 1 80 8 10985849 10986636 GCTCCAATTATCAGTTTCTCCT 58 10986676 10986695 GAACTCTGGCTAAGTAGTGG 58 Novel Rattus norvegicus 81 AABR07069186.1 ENSRNOG00000060057 ENSRNOT00000077533 2 1 1 80 8 10986715 10987485 AGCTCTTAACTGACTCTGCC 60 10987523 10987546 CAAGTTGTTGACACTGTAGATCTC 60 Novel Rattus norvegicus 81 AABR07069197.1 ENSRNOG00000059516 ENSRNOT00000084249 3 1 1 81 8 11546919 11548906 CCAGCTCAATTCCTAAGATACAG 59 11548944 11548965 TATCCACAAAGCCCATATTCCA 60 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 1 2 3 86 17 20998251 20998269 AGCTCTCCCTATTTCTGGT 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07027309.1 ENSRNOG00000060680 ENSRNOT00000082678 3 1 1 94 17 23795803 23803933 GACAGGATCTAGATCCTGACTG 59 23803987 23804006 AAGCAGGAGTTATCTGCTGG 60 Novel Rattus norvegicus 81 AABR07027321.1 ENSRNOG00000056758 ENSRNOT00000091716 1 1 1 81 17 24506740 24508088 ACTGAAGAGAAACTGGAAGAG 57 24506679 24506698 CCCGATTGTCCTTATATGCA 58 Novel Rattus norvegicus 81 AABR07069360.1 ENSRNOG00000057602 ENSRNOT00000078630 1 1 1 83 8 18225303 18225324 GTGAAGCCTTTAGGACAAACTC 60 18225368 18226136 TGAGTCTTCCCTGCAATGG 60 Novel Rattus norvegicus 81 AABR07043031.3 ENSRNOG00000059345 ENSRNOT00000081723 2 1 1 80 19 18024466 18024486 ATACGGCATCATCTCATTTCC 58 18021991 18024426 CACAAGGAGTAATCACCTCTG 58 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 3 2 3 82 8 23495990 23496012 GTACAGCATTATTAGCGTGTACC 60 23496051 23509007 GACATTTCCTTTCAACCTTGCT 60 Novel Rattus norvegicus 81 LOC102546383 ENSRNOG00000052557 ENSRNOT00000083644 1 1 1 80 17 27390048 27390066 TCACCTATCAGGACCAAGC 59 27390109 27393487 CAACAGGAATAGACAGCACC 59 Novel Rattus norvegicus 81 AABR07057203.1 ENSRNOG00000059338 ENSRNOT00000086821 3 1 1 62 7 60282578 60282596 CGAAGAGAAGTGTGAGGGA 59 60283358 60283376 GACAGTGTCTTTGCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 2 1 1 60 19 22770723 22770742 ATTACTTCTCTTCAACGGCT 57 22770763 22775612 TTAACAGTGAGTAGGGTTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 2 1 1 78 7 63270919 63270937 ATTGAGCTGGAGTCAGCAG 60 63269739 63270879 CCTGGGACATATTTAGCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069733.1 ENSRNOG00000058081 ENSRNOT00000082354 3 1 1 101 8 38422276 38422297 TCAGACTCCAGTGAGATTTGTC 60 38421821 38422219 CTGAAATGATAGTTCTGTGAGCAG 60 Novel Rattus norvegicus 81 AABR07043429.1 ENSRNOG00000059075 ENSRNOT00000079937 3 1 1 80 19 28317992 28318645 CTTCTATCACAACCTGCACAG 59 28317932 28317951 CACTCCTGCTTCAATGTGAC 59 Novel Rattus norvegicus 81 AABR07043696.1 ENSRNOG00000052825 ENSRNOT00000090201 3 1 1 90 19 36108351 36109403 CATGTGGAATGTGGAAGGC 59 36109457 36109475 TTCACCCTCTCCTCTTCCT 59 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000085269 1 1 3 112 10 23510 23534 GGAGCGACTTTATATCTTCTAAGTC 59 16274 23440 CTGTGGCATGATGTCTCCA 60 Novel Rattus norvegicus 81 AABR07007409.1 ENSRNOG00000058632 ENSRNOT00000084327 3 1 1 82 2 13055058 13055082 GTGTGAATAGAATCAGAAGGTTCTC 60 13054473 13054491 CTCCTGAAGCTATCACCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 3 1 1 67 10 10921316 10943249 AGTTTGCAAAGACTCTGCAG 59 10921268 10921286 AACAGTCTCCACAGTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057848.1 ENSRNOG00000058219 ENSRNOT00000082296 2 1 1 108 7 90747073 90749839 CTGCCATCTAATGTGATGCT 58 90746984 90747005 AATCTAGTGCAGAGATTCTGAG 58 Novel Rattus norvegicus 81 AABR07058017.2 ENSRNOG00000053624 ENSRNOT00000079983 3 1 1 81 7 98718865 98722187 CTTATTAGTTGGAGGCCGG 58 98718802 98718820 CTAGACACGAAGTCCATGG 57 Novel Rattus norvegicus 81 AABR07007693.1 ENSRNOG00000055870 ENSRNOT00000090810 1 1 1 80 2 24557481 24557500 TCTTAGGAGTCCATGCTTCC 59 24558578 24559236 GTGCCAATTCTCTATCACTTCAG 60 Novel Rattus norvegicus 81 AABR07007693.1 ENSRNOG00000055870 ENSRNOT00000090810 2 1 1 84 2 24557477 24557497 TTTCTCTTAGGAGTCCATGCT 59 24558578 24559236 GTGCCAATTCTCTATCACTTCAG 60 Novel Rattus norvegicus 81 AABR07041361.1 ENSRNOG00000058857 ENSRNOT00000077982 1 1 1 61 X 127335792 127335811 AGTATCCAAGGTATCCACCA 58 127334991 127335009 TTACACCTGCTTCAAGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029451.1 ENSRNOG00000056168 ENSRNOT00000077723 1 1 1 64 10 29084458 29084478 CTCCTCTGCTTACATTAGGAC 58 29085432 29085453 GCTTCTTCAGTCCTGTATTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 2 1 1 63 10 30546878 30555478 TAATCTGCAACTGCCAGCT 60 30546833 30546852 CCCTTTGCAATGGTACAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 1 1 1 84 10 33227266 33227284 TGTCCTTGGTACTGAAGCC 59 33227329 33227906 ATTTCCACACTCTTCATCACTG 59 Novel Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 3 1 1 85 10 33227266 33227284 TGTCCTTGGTACTGAAGCC 59 33227329 33227907 GATTTCCACACTCTTCATCACTG 60 Novel Rattus norvegicus 81 AABR07058383.2 ENSRNOG00000053930 ENSRNOT00000085641 2 1 1 92 7 113338855 113357240 AGTAACATGTGAACAGGTCC 58 113357294 113357313 TTGGCTTACAACTGTTTGTG 57 Novel Rattus norvegicus 81 AABR07070198.1 ENSRNOG00000058419 ENSRNOT00000090752 1 1 1 78 8 57462872 57462893 GACAAAGGACCCTTTATTTGAG 57 57459889 57459912 GTGCTATCTATGAAGAATCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058410.2 ENSRNOG00000053874 ENSRNOT00000080383 2 1 1 80 7 114895895 114910217 CTTGAGCAACAGAAGGGAG 58 114895833 114895852 AATGTATGAGAACTGCGTCC 58 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535,ENSRNOT00000086794 2 2 2 123 X 149273959 149273977 GAAGAGCCTACACAGAGCA 59 149274236 149274254 GAGCCAGCACTTCTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC127919.1 ENSRNOG00000054996 ENSRNOT00000089246 3 1 1 80 10 40727283 40727303 CATCACAAATCCTGATTTGCC 58 40727344 40728519 AAGATCATTGAACCGCTGTG 59 Novel Rattus norvegicus 81 AABR07029617.1 ENSRNOG00000059529 ENSRNOT00000091350 3 1 1 80 10 41145703 41146330 TTTCCTATCTCAAGGTGGGA 58 41146372 41146391 CCAAGGTATGACAAGGAACG 59 Novel Rattus norvegicus 81 AABR07070335.1 ENSRNOG00000053878 ENSRNOT00000085846 1 1 1 90 8 66066061 66066081 GCTTCCTTATCTGCTAATGGG 59 66064556 66064577 GATGCCAAGCCAAATTATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027919.1 ENSRNOG00000057076 ENSRNOT00000091951 3 1 1 80 17 49053364 49053382 AAGAGGAGTATCCTCCCAC 58 49035693 49053323 CTGGATAACTTTCTTCTCAGCT 58 Novel Rattus norvegicus 81 AABR07070341.1 ENSRNOG00000053021 ENSRNOT00000078877 1 1 1 77 8 66356776 66356797 AGATTCTGAAGCAAGAGAAGAG 58 66356601 66356619 TTCCATAGGTCACAGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044367.1 ENSRNOG00000052534 ENSRNOT00000081627 1 1 1 60 20 3520158 3524018 GTACAGTGATACTGAACCCAC 58 3524040 3524058 CAGTTCAGCGGTAAAGCAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044414.1 ENSRNOG00000059927 ENSRNOT00000081316 3 1 1 100 20 5214633 5214651 GATCTCAGTCCTGAGGAGG 58 5214263 5214572 ATGTGGTACATGTTGACAACTC 59 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 2 1 1 89 8 66731702 66731720 GTACTGAAGGCCACTCAGG 60 66730714 66731652 GTTGTTTCTCTTGTCGAGTCAC 60 Novel Rattus norvegicus 81 AABR07044415.1 ENSRNOG00000055766 ENSRNOT00000079282 3 1 1 114 20 5261161 5261539 TTGCAGAGATTCTCCACTG 57 5261616 5261635 ATTCTCAGCTTCTCCATTGG 58 Novel Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 2 1 1 75 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56876318 56879352 GATCAAAGGTGAGAAGCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059004.1 ENSRNOG00000051731 ENSRNOT00000085430 1 1 1 80 4 860281 860299 TGACCAGTTTGACAAGCCT 60 860342 865279 TCTTCAAGTTCACTGTCCCA 59 Novel Rattus norvegicus 81 AABR07007878.1 ENSRNOG00000059628 ENSRNOT00000088094 1 1 1 80 2 32553194 32553213 AATGTCATCAGGCAAAGCAG 59 32530480 32553153 ACTGATTATCAGCTGGTCTGG 60 Novel Rattus norvegicus 81 AABR07007980.2 ENSRNOG00000057850 ENSRNOT00000082352 3 1 1 82 2 37032025 37032044 TGCATGAGACCTACAAAGAC 58 37023648 37031980 CACGATTACACTGGTTGGA 58 Novel Rattus norvegicus 81 AABR07059258.1 ENSRNOG00000060937 ENSRNOT00000090966 3 1 1 161 4 12472121 12472139 CAAGGTGGCCTATGAAAGC 59 12366396 12471999 GAAATCTCAACTTGCTTGACAC 59 Novel Rattus norvegicus 81 AABR07044671.1 ENSRNOG00000061116 ENSRNOT00000081523 1 1 1 81 20 16652570 16652590 GCAATGCTCTTTGGAAATGTC 59 16641968 16652530 CTTATTTGCGTCGTATACATGC 58 Novel Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 2 1 1 66 8 84681148 84681167 GGAAAGAAACAAATGCCAGG 58 84671566 84681119 TTTGAAGAGGCTCTTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028469.2 ENSRNOG00000051853 ENSRNOT00000084039 1 1 1 83 17 71451028 71451047 AATCAGCTTCTCAAGGACAG 58 71451093 71522293 CTTTAGTGCCAACCTTCCT 57 Novel Rattus norvegicus 81 AABR07008066.3 ENSRNOG00000056624 ENSRNOT00000085890 1 1 1 80 2 41526713 41526732 TCTGAGACCTGAACAATGAC 57 41526772 41528230 GGCTTCATCAGTTCTTTAACAG 58 Novel Rattus norvegicus 81 AABR07044805.1 ENSRNOG00000055873 ENSRNOT00000091093 3 1 1 99 20 21197224 21212263 CTGGAAAGTTTCCAGCTCTC 59 21212324 21212343 TTACCTGTTCAAGCTGAACG 59 Novel Rattus norvegicus 81 AABR07059780.1 ENSRNOG00000060558 ENSRNOT00000089406 3 1 1 86 4 35409353 35409374 GGATTAGAGCAACTGACAAAGG 59 35409418 35427074 CAATTGCCAAGAAATCACTCTG 59 Novel Rattus norvegicus 81 AABR07044805.2 ENSRNOG00000056976 ENSRNOT00000090472 1 1 1 80 20 21216963 21219173 ACAAGATACCCTACATAGTAGCAG 59 21219210 21219230 ATTGTGCTGAAACTCTTCCAC 59 Novel Rattus norvegicus 81 AC141220.1 ENSRNOG00000059795 ENSRNOT00000083975 3 1 1 61 17 76305660 76305678 CATCACTGCCTTCTCACAG 58 76306270 76306289 AAGTTCCAGAGTACAGCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC130585.1 ENSRNOG00000052904 ENSRNOT00000082020 2 1 1 81 8 99958629 99960515 GATTGACAGGTTGTTCATACAG 58 99958569 99958588 TCTTTCTAGGTTCTTGCCTC 57 Novel Rattus norvegicus 81 AABR07071167.2 ENSRNOG00000052169 ENSRNOT00000079806 2 1 1 93 8 103145876 103145896 CTATCACAAGGACAGTGTCAG 58 103145949 103147610 ATGTATCTGGTACACCACCTC 59 Novel Rattus norvegicus 81 AABR07044962.1 ENSRNOG00000056428 ENSRNOT00000089619 3 1 1 80 20 28367445 28369485 GCTAGATATGATACTGGAGCTG 58 28369526 28369544 TGAGTTCCACTGTAAGCCA 59 Novel Rattus norvegicus 81 AABR07060062.1 ENSRNOG00000055894 ENSRNOT00000082083 1 1 1 60 4 52015167 52015188 TTACATTCCACCTTGTGTTCTC 59 52017661 52017679 TGAAGATACTCAAGGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 1 2 2 83 20 41022101 41023151 GTTGACTGGTAGATCCCAGG 60 41022037 41022055 TCATCTTCTCCTAGCGCTG 59 Novel Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 1 1 1 84 8 114178845 114178863 TTAAACAACCACACCGGTC 58 114176736 114178797 AAAGCAACTTCACAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 3 1 1 69 20 48814472 48815822 CAAGTCATAAACAAGCAAGGAC 58 48814424 48814443 AATTTCCCTGGATACACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071551.2 ENSRNOG00000060625 ENSRNOT00000083631 3 1 1 83 8 121702877 121703660 GATGCCATAATCTCTGGTCTG 58 121702814 121702833 TCATTCACAATGTCACCGAG 58 Novel Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 2 1 1 83 4 80484384 80486381 CAACTAATCGGGAGGAGCT 59 80486428 80486446 TTTCCCATCACAGAGGAGC 59 Novel Rattus norvegicus 81 AABR07060560.3 ENSRNOG00000056372 ENSRNOT00000085281 3 1 1 80 4 80674812 80674830 GTTCTCAGCATTTGCAAGG 58 80674873 80676773 TTTGGTAAACAGAAGAGCCA 57 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 3 1 1 80 19 45850156 45850565 CAGAAATAAGAAACGGAAGCAC 58 45850097 45850115 CAACATCACAGAGGAGCTG 58 Novel Rattus norvegicus 81 AABR07071620.1 ENSRNOG00000061859 ENSRNOT00000086230 3 1 1 91 8 124506368 124506386 ATTTGCTTCCGGGACTCTC 60 124506438 124526672 ACTTTCTTTATTCTGGCTGAGC 59 Novel Rattus norvegicus 81 AABR07071697.1 ENSRNOG00000059784 ENSRNOT00000090101 3 1 1 130 8 126966254 126966272 TCCTTATGGGAAGTCGTGG 59 126966366 126969202 CATTGGTGCCCACATAGAC 59 Novel Rattus norvegicus 81 AABR07071742.2 ENSRNOG00000055201 ENSRNOT00000091761 1 1 1 90 8 128721259 128729933 CATCTGTGGAGAACCTGGA 59 128729984 128730005 GCGACTAACAAATTGTTTGTCC 59 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 1 1 1 60 8 129157630 129157648 CCTCTCCCGAACCTAAGTC 59 129156252 129157607 ATATCTAGTACCAGGCACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072664.1 ENSRNOG00000060142 ENSRNOT00000083059 3 1 1 181 19 56878624 56879778 ATCTCACAGACCGAACTGC 60 56879922 56879941 GGGTACTGCTTAGGTCAGAG 59 Novel Rattus norvegicus 81 AABR07009600.2 ENSRNOG00000056581 ENSRNOT00000091685 3 1 1 80 2 105589411 105589431 AACTGATGAGAGCTCTTTACC 58 105589472 105633741 TACTGTACATGGAAAGGCCT 59 Novel Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 2 1 1 60 2 126934609 126934627 GAGTCCTTCCAGACAGTGG 59 126933555 126934586 TTCTACTGCTCACTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 3 1 1 60 2 126934612 126934630 GTGGAGTCCTTCCAGACAG 59 126933558 126934588 TACTGCTCACTCCTGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010468.1 ENSRNOG00000052002 ENSRNOT00000086872 1 1 1 89 2 136982438 136983285 TTTCCCACTTGGTGAGGTC 60 136982367 136982389 ACAGTATGCAGTTCTATGAGGAG 60 Novel Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 1 1 1 66 2 139942376 139945246 CACAGACATGACCAGGAGG 60 139945276 139945294 ATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 1 1 1 104 2 144175708 144178112 ATTAACACGACAGGTGCTG 58 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 3 1 1 72 2 149090389 149090407 AGACATCAAGGCTGGAGAG 59 149090441 149096508 TGAATGACATCCAAACTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC111231.3 ENSRNOG00000060025 ENSRNOT00000084370 3 1 1 91 2 150217708 150217727 TCTGACTATTTCCGTAGCCC 59 150215282 150217655 AGTCCTTCACAGTGATGGTG 60 Novel Rattus norvegicus 81 AABR07010763.2 ENSRNOG00000058839 ENSRNOT00000084830 3 1 1 82 2 150566197 150610638 TTCATCAGGAAGACTTTCCAC 58 150566135 150566155 GATGTTAGGATGAGGTGAGTG 58 Novel Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 2 2 2 110 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311098 156311116 CAGGTAGGGAAGGGAAAGC 60 Novel Rattus norvegicus 81 AABR07011084.2 ENSRNOG00000060521 ENSRNOT00000078172 1 1 1 130 2 157392333 157392351 ATCTGAGCCAGTGATCGTG 60 157392445 157402613 GTCTCCAGCTTCTCCTCTG 59 Novel Rattus norvegicus 81 AABR07011545.1 ENSRNOG00000049459 ENSRNOT00000073022 1 1 1 80 2 163341510 163341528 AATGGAGTCCTTGGCTGAG 59 163321983 163341472 CTACGTCTATAATATTTCCAGGCAC 59 Novel Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 3 1 1 161 2 177343807 177343825 ATACCTGGAGAGTTGGCAC 59 177343231 177343684 TTCTTTGTCTCAGGAATCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012065.1 ENSRNOG00000056112 ENSRNOT00000086755 2 1 1 116 2 184693457 184693475 TTATCGGCATCATCACCCA 59 184693058 184693377 ATGCAAGGACCTGGTAGAG 59 Novel Rattus norvegicus 81 AC098750.5 ENSRNOG00000058324 ENSRNOT00000091819 2 1 1 80 2 188600972 188601804 TGTCCTCTAAGATTTGGTCTG 57 188600912 188600930 GACAGGATAGAGGAACGGA 58 Novel Rattus norvegicus 81 AABR07012613.1 ENSRNOG00000058608 ENSRNOT00000086269 3 1 1 87 2 199439405 199439423 GCTCAGAGTCTTTCCTGGG 60 199433087 199439354 GTGGGTGACTGGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07014306.1 ENSRNOG00000051571 ENSRNOT00000084014 3 1 1 81 14 8903634 8912491 CCATTCGAGGATCTTCAACG 59 8912533 8912553 AGACATTGTGCTTTGTAAGCC 60 Novel Rattus norvegicus 81 AABR07013314.1 ENSRNOG00000060298 ENSRNOT00000091790 3 1 1 83 2 232988642 232988661 AACTTTGAACTAGCAAGGCA 58 232988706 232993623 TTCCAGCAAATCTTTCTCCA 58 Novel Rattus norvegicus 81 AABR07013410.1 ENSRNOG00000052248 ENSRNOT00000080258 3 1 1 87 2 236007074 236007092 AAAGCTGACTTGCCAACAC 59 236011056 236011075 TTTCTTCTTGGTGCTGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013477.2 ENSRNOG00000059314 ENSRNOT00000091629 3 1 1 80 2 239058185 239058205 ACAGATGAGTCGAAACAACAG 59 239058243 239061823 CCAAGTAGAGAATCTTCTGAAGG 58 Novel Rattus norvegicus 81 AABR07013488.2 ENSRNOG00000057646 ENSRNOT00000080711 1 1 1 87 2 239579753 239579773 CACTTAAGGTTTCTGAACCGA 58 239579822 239598228 TCTCATTCCTCCTCACCTG 58 Novel Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 1 1 1 61 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249514717 249515168 AATTTCAGCCTCCATCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.2 ENSRNOG00000057293 ENSRNOT00000087350 1 1 1 96 2 249528199 249529897 GTAATACTAACTACTGATGGCGTC 59 249528126 249528144 CAAACTGCTCCAACTTGGG 59 Novel Rattus norvegicus 81 AABR07013701.1 ENSRNOG00000057834 ENSRNOT00000090803 2 1 1 81 2 251535215 251535233 CCTCTGCTGAGAGCTACAG 59 251535275 251606330 TGTAGTGGAATTGTCTTCTCCA 59 Novel Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 3 1 1 64 2 254280120 254285564 TGTGATGCAAGGTATGTTGTG 59 254285590 254285608 CTTTGATGACCCAAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013762.1 ENSRNOG00000057395 ENSRNOT00000082852 2 1 1 80 2 255038593 255076477 GACCCAAGATTTCCTGATAGAC 58 255076515 255076536 AATCTTAGGGACATCAACTGTC 58 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 1 1 1 67 2 255464419 255466063 CAGCTCTTGCTTTACAATGTG 58 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076775 3 1 4 89 7 115870359 115873154 GAAACACTCCAGGCTATGC 59 115870288 115870306 CTGGGCAATGGATGATTGG 59 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 2 1 2 107 7 115830355 115830373 ACTCACTACGGACTCTCCT 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 AABR07027511.1 ENSRNOG00000058793 ENSRNOT00000090457 1 1 1 80 17 34940783 34941457 ATATTTGAAGGTGCCCTTGG 58 34940722 34940741 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 AABR07012295.1 ENSRNOG00000052006 ENSRNOT00000071718 3 1 1 271 2 192343229 192343247 TGTGTCTTCCTGCTGTAGC 60 192342975 192342994 CAACAGCAATCTCCAGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014242.1 ENSRNOG00000051404 ENSRNOT00000057117 1 1 1 60 14 5868844 5868863 CTAAGTATCCAGAAGCACCC 58 5868803 5868821 ACGCCACTCATATTGACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117889.1 ENSRNOG00000053079 ENSRNOT00000089404 1 1 1 80 10 986871 988592 TCGACAAGACAATCTGCCA 59 988636 988654 TCAAATCCTGCACCAAGGA 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000055267 ENSRNOT00000088460 3 1 1 60 4 62765761 62765779 AAGAGGGAACTGCATTCTG 57 62765801 62765821 AGGTAATTCCTACATCTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052974 ENSRNOT00000080430 2 1 1 60 4 174975415 174975435 CAAACAAGCTCTCAAGAAACC 58 174975375 174975398 TTATGACTGCCTAATAGTAGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052974 ENSRNOT00000080430 3 1 1 60 4 174975414 174975434 AAACAAGCTCTCAAGAAACCC 59 174975374 174975396 GTTATGACTGCCTAATAGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039648.1 ENSRNOG00000002789 ENSRNOT00000003730 3 1 1 60 X 81817032 81817053 AACATGAAGATCAAGTCCTTGG 59 81816993 81817011 GAGACTCCTTAATGGGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0558.2 ENSRNOG00000051347 ENSRNOT00000076984 3 1 1 138 13 50692033 50696562 ACTGCCTCTTTCCAAGGAC 60 50696664 50715175 GTTTCACTCTCCAACGCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000056998 ENSRNOT00000082325 1 1 1 60 3 58994460 58994478 GCGAAAGTGATCATTCACC 57 58994501 58994520 CTAGCCAATCCAATTCTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061309 ENSRNOT00000085521 3 1 1 60 17 63251802 63251820 GAATGACCCTTACTGTCCC 57 63251843 63251862 CATCTTTGTCAACTGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 1 1 5 80 6 115018651 115018675 GCTAAGAATACAGAGTCTGAAGG 59 115001663 115001682 ATCCTCCTTAAGTGCTCCTC 59 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 1 1 1 60 16 19954694 19954712 GCGACTTCAACAGCAACTC 60 19954740 19954758 GTCATTGAGAGCAATGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4095012 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 2 1 1 65 5 168845243 168845263 AGCTGAAATCACCATCTTTGG 59 168845330 168845348 ATAGCTCTTTGGACTCCGT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000059788 ENSRNOT00000089413 1 1 1 60 1 116746403 116746424 GACAACAGAAAGTCAAGAACAG 58 116746364 116746383 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 3 2 2 80 4 29561562 29561580 TCTAGAAAGAACCCTGCCC 59 29561621 29562211 GTCAATCCAGTAGTAATCGCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 3 1 1 60 1 37989887 37989908 ATGCTAGAGAATTACAGCAACC 59 37988410 37988428 CGAGATATGGCTTAGCGGA 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0803.1 ENSRNOG00000051311 ENSRNOT00000076718 1 1 1 80 13 75366066 75366906 CACTTCTTGATCTAGGAAGGTC 58 75366944 75366965 AAGTGAAGTCTTCTTCACTGTC 58 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 3 2 3 82 X 73665294 73665313 TCCTCCTAACTTTGCCTCTC 59 73659835 73665249 CATCAGAACCTTGTGGTCC 58 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000082425 1 1 3 60 20 3367495 3367513 CCCTGATTTGGCTGTAGAC 58 3367536 3367555 TGCACACGGACATAATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058070 ENSRNOT00000077621 1 1 1 60 2 26129600 26129618 GTTGATCTGGCAGACAGGT 60 26129558 26129578 CAGCATTGAGATGAATGGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058070 ENSRNOT00000077621 3 1 1 61 2 26129600 26129618 GTTGATCTGGCAGACAGGT 60 26129557 26129577 ACAGCATTGAGATGAATGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019888.1 ENSRNOG00000053960 ENSRNOT00000090887 1 1 1 60 13 6055528 6055549 ATCCATCATGTTCTAGTCACAC 58 6055489 6055510 CTAGCATCTCTACTTCTTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.10 ENSRNOG00000049262 ENSRNOT00000072539 2 1 1 60 1 121225513 121225531 TGATCAGTCAGGCTACTGG 59 121225471 121225489 GGCTTTGGTTATACCCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000004278 2 1 2 82 X 72075658 72075678 AAGGTGAATGACACCATTCAG 59 72074839 72075615 ATACACAGGTTCCCAGTGTC 60 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051675 ENSRNOT00000083238 3 1 1 60 3 38777644 38777664 CAAGGCTTTCCCTTAGTTGAG 59 38777685 38777704 TCTGTCTAGTTGTGAAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.1 ENSRNOG00000051467 ENSRNOT00000086881 1 1 1 61 2 210002111 210002129 GAAGAGCATCGCTTCTCAG 58 210002068 210002092 CTGCTCTTCTGTTATCATACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057202 ENSRNOT00000082280 3 1 1 60 5 71444183 71444202 CTGTGTTACTTGGGTGTCCT 60 71444222 71444243 GAGCACAGACATAGTCTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 2 2 2 90 18 14776135 14857565 TGCCTGGATGTTCAAATTGG 59 14857618 14857636 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 3 2 2 90 18 14776136 14857566 GCCTGGATGTTCAAATTGGG 60 14857619 14857637 CCATGCGATGATGTCATGC 60 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000090885 1 1 2 80 13 96099272 96101535 GTTTCCTGATTCAAGTATCTACCTG 59 96101568 96101591 CAGAAATAGCTCAAATGACTGAGG 60 Novel Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 2 1 1 65 15 31951123 31951141 TCCTCTGGCTTCAACTGAG 59 31951362 31951380 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 2 1 1 103 2 257462433 257462452 TTGACAAGGCCAACAAACAC 60 257462519 257462537 AGTTCCAGAAGCTAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000080528 2 1 4 83 9 81645200 81645218 AGTACAAAGACGACCTGGG 59 81645263 81645679 GTTGAGGTAGCTTGTCTAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051646 ENSRNOT00000084279 2 1 1 61 15 39604341 39604363 GGAACGATACAGAGAAGATTAGC 59 39604302 39604321 CAGTTAGGTACTCTGCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045491 ENSRNOT00000070758 3 1 1 60 1 47042012 47042030 TGCATATGGTCTCATCTGC 57 47042051 47042072 ATCCACATACTAATCAGACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snopsi28S-3327 ENSRNOG00000056898 ENSRNOT00000080118 3 1 1 66 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490247 150490265 AAATTGTTTCTCTGGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053320 ENSRNOT00000082311 1 1 1 60 13 536881 536902 ATACAGAGAAGATTAGCATGGC 58 536922 536941 GGAACGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 1 1 1 60 11 36588718 36588737 ACGACTTATGGTATTGCGAG 58 36588755 36588778 CTCATAAAGAGTAACAGAACGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 3 2 2 80 4 164047281 164047299 GGATTGGATGTCAACAAGC 57 164042718 164047239 GAAGGAACTTCAGTTCATCCT 58 Novel Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 3 1 1 63 8 42839614 42839632 TTCCTTCTGTTCCTGAGCA 59 42839566 42839584 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 2 1 1 64 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138168 120138188 CTTCCTCTCCTGGAGATACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 3 1 1 77 2 26870118 26870136 CCACCTGTGGTCTTAAGGG 60 26869963 26869982 CTTGTTACCACCTCCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000079157 3 1 2 96 16 33374195 33374570 CCCTAAGAGAACACAAATTGGA 58 33374627 33374646 ACTCTGAGGTAGTGTCTGTC 58 Novel Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 1 1 1 69 20 47733552 47733570 CATCCAATGACACCAGCTG 59 47733501 47733522 GAAGCTGTGTTATTTGCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 3 2 2 80 1 1441917 1441937 TGCAATCTTTCTCTGAGTCTG 58 1440630 1441878 AAAGGAGTGTACATCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 2 1 1 60 5 17123487 17123507 TAGATCTTGCTTACATCGCAG 58 17113843 17113862 CTGTTGGAATTCAACAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000086689 1 1 2 115 1 11984268 11984287 TCACCAAAGACACTTCTGAC 58 11983184 11984191 CTTTCATGCACTTCATCCAC 58 Novel Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 2 1 1 83 10 78340591 78340612 TGATGAAGATAACCAATAGCCC 58 78339930 78339948 GAGTAATGCACTGTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 2 1 1 116 14 82289301 82289319 TACCCTGTCTGGAGTCCTC 60 82288645 82288663 GATACCTGAGGTCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161 2 1 2 82 10 88568242 88577770 CCTGTTCAGAATCATCGAAGC 60 88568180 88568198 GTTCAGCTGGATGTTGCAG 60 Novel Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 3 1 1 60 4 146296367 146296386 GTCACAACCATGAGAAGACC 59 146294967 146294985 AGCACTTACTGTTGATGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 3 1 1 75 14 112997162 112997183 GGTGGATGTCATGTTACAATGG 60 112969508 112969528 GTCATCGTGCACATCTTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 3 2 2 81 15 46495172 46495190 CATCTTGGGAAAGGCAACG 60 46495231 46502322 GTCATCTTCTTTGAATCTCCTGG 59 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 1 1 1 103 15 103583562 103583580 ATGTTGGACATACTCGGCT 59 103576093 103576112 GGCGAGTTCTGTGTATAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 2 1 1 98 1 95240941 95240959 AACAATGACAACAGCAGCA 59 95241709 95241727 CTCAGCTCCAATCTTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 3 1 1 75 1 97089813 97089834 TCAATAAGGGATCACAAGACTG 58 97084667 97084685 TCAAGTTTCGAGCCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 3 1 1 76 11 35609379 35609397 AGGAAAGGAACAAGTGGAG 57 35611092 35611111 TAGTCAGTGTTTGCTCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 1 1 1 67 11 64195367 64195385 CTACCGAAGGACCATTGTG 58 64225617 64225635 CTTACTGTGCATGCTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 2 1 1 62 11 83801320 83801338 CTCTGGAGCCAAATCATGG 58 83814236 83814255 AGTTCCATCTCTGAACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 1 1 1 60 3 80966036 80966055 CACCATGGCCATTATTACCT 58 80968160 80968178 AGTCCACAGACATGTGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043 2 1 2 84 12 3807802 3807929 TCATGAAGGCATACTCCCTG 59 3807976 3807994 ACCTGCATGAGGAGTAAGC 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 3 1 1 102 1 134951711 134951731 ACTGAAGTTTCCAATCTGGAG 58 134951458 134951477 TAAACAAGTGCCTGGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 2 1 1 60 9 69756806 69756825 TTATCGGTTACTTCTGCCTC 57 69770262 69770280 CGAGTGTTCAAAGCTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 2 1 1 61 9 106784506 106784527 TCAGAATTCATTATGGCCACAC 59 106734734 106734752 ACCACCTCCTTGAAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 2 1 1 60 17 5877411 5877431 AACACTATCTGTGAGATCTGC 58 5889672 5889691 TATTCAGACAACGCAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 1 1 1 64 19 5851829 5851847 AGGAGGAGTCTCCTGTGAG 60 5852488 5852510 CCATGTAATTTGTCTGTACCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 3 1 2 60 19 11671468 11671486 CAAGACTGCGTTTGATGGA 59 11686700 11686718 GCTAGCCCTTGAGAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 2 2 2 80 19 38365659 38365974 TCATCGTTCTGAATGTTACAGC 59 38365600 38365621 CCAGTAGTTCATTCCTCAAGGT 60 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 1 1 1 68 10 11306707 11306725 GAGAGCAGCCATGAAACAG 59 11308050 11308068 GATTTCAGGAAGGAGGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 3 1 1 60 7 105102040 105102060 ATGTTAGTCATCTTCTGAGCC 58 105122127 105122146 AGATGGTTCTTAGCTCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000090459 3 1 2 95 10 35053547 35053565 CAGAACCATACCTCAGCCC 60 35053221 35053488 AGCATCAGTACTGAGCCTG 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 3 2 2 80 4 108023 108302 GAGGTTTGTGTTAAGGCCTC 59 108345 108363 TTCAGCTCTCCAGTGACTG 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 1 1 1 62 8 84893249 84893267 AGAGCCCTATGAAAGGAGC 59 84886665 84886683 CCTCTTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 1 1 1 60 17 86214922 86214940 ACAATGTGAGGCACATCTG 58 86214790 86214808 TTTCAGTTTCTGGAGACCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 1 1 1 60 4 59202819 59202840 GCAAACTTTACTACTGCTGAGG 60 59196383 59196401 AAACTCTAGCACGTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 1 1 1 116 4 63698700 63698718 TTTAACACTGAGCCACACC 58 63631493 63631511 TAGAAGGGAGGTAGGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 3 1 2 84 7 131431131 131431149 AAGTCTGCTGAGACATGGG 59 131397411 131431084 AGAACTTCATGGGAGGTCTC 59 Novel Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 1 1 1 60 8 130967903 130967923 TCACTTTCTGCACTTGAACTG 59 130967655 130967674 TAAAGTACCTGACAGCAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 1 1 1 82 7 137542325 137542344 GGAGATGGTAATCCACACTG 58 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 1 1 1 60 2 133028532 133028550 CTGCAGGAAAGTCCTACAG 58 133026417 133026440 TCATCCTCTACCACTTATATGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 3 1 1 68 2 150686754 150686774 CAACCTCCATGGTCTAATCTG 58 150689276 150689294 TGGAACGTCCCTATCATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 1 1 1 63 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249515151 249515170 TCAATTTCAGCCTCCATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 2 1 1 64 2 249514673 249514692 AAGAGAATTAGCTGCACGGA 60 249515151 249515170 TCAATTTCAGCCTCCATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 3 1 1 76 2 255466053 255466072 AAAGGTCTACAGCTCTTGCT 59 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-co1 ENSRNOG00000034234 ENSRNOT00000050156 3 1 1 60 MT 5882 5900 CCGTACTAATTACAGCCGT 57 5921 5942 GTGATACCTGCTGCTAATACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkaa1 ENSRNOG00000012799 ENSRNOT00000017626 2 1 1 80 2 54873638 54875505 CCTCATATAATCAAACTGTACCAGG 59 54875540 54875561 CTCTCCTCCTGAGACATATTCC 59 NA Rattus norvegicus 81 Mir124-2 ENSRNOG00000035499 ENSRNOT00000053622 3 1 1 66 2 102311607 102311626 AGATCAGAGACTCTGCTCTC 58 102311654 102311673 GCGTGCCTTAATTGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa9 ENSRNOG00000021134 ENSRNOT00000028693 3 1 1 80 2 196474197 196474215 CCAAGAACTGGAGGATGCT 59 196474046 196474154 CTCATCATGGAAGCTAGGCT 59 NA Rattus norvegicus 81 AC115371.1 ENSRNOG00000048644 ENSRNOT00000065210 3 1 1 120 15 33610920 33611433 CTATTCATCAGGAAGCCGC 59 33611517 33611535 GAAGGACGAGGAGATGGAG 59 NA Rattus norvegicus 81 LOC680353 ENSRNOG00000033484 ENSRNOT00000048963 2 1 1 60 X 74824533 74824551 GGACTTTCTACTCACAGCC 58 74824573 74824593 CGTGTTCTTCTTGATCTTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365839 ENSRNOG00000016146 ENSRNOT00000021604 2 1 1 80 2 186631006 186631025 AGGAATTCAGAACCTTGGCT 59 186631063 186631204 GTAAGCCTATGATAGTTGTCACTG 59 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027931 3 1 3 80 15 34862923 34862941 TAAAGGACAGCTGTGGTGG 60 34862983 34863500 CTGTGATTTCTCTTCCTCTGC 59 NA Rattus norvegicus 81 Olr1670 ENSRNOG00000049000 ENSRNOT00000044420 2 1 1 60 20 386716 386737 TCCAGCTTTATTTCTTCCACAC 59 386758 386776 GACATAAGAGCCAGGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 1 2 2 80 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699125 TGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Lst1 ENSRNOG00000000855 ENSRNOT00000065940 1 1 1 80 20 5178019 5178345 GCTACTAGAGAAACAGTGTTACC 59 5177961 5177980 AACAGGATGATGACAAGCAG 58 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 2 2 2 80 8 117282501 117282748 GATCCTAGGAGAGTGTCCA 57 117282934 117282953 CTCATCTGAACTCTGTCTCC 57 NA Rattus norvegicus 81 Ttc3 ENSRNOG00000001682 ENSRNOT00000065600 3 1 1 80 11 34612714 34612736 GTATCTGTACTCCTGACTTTACC 58 34612776 34613072 TATATTGCATACCCACGCC 58 NA Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000032601 1 1 2 80 15 36356083 36470693 GCTGTTAAAGCTGAAGAGTAAGG 60 36356025 36356046 TTCACTTTGAAGTTGCTTCTGG 60 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 3 3 3 80 2 219078724 219081997 TGGAGGTCTACTCATTCCCT 59 219078663 219078682 AGTTGACAGTGACAGGTCTC 59 NA Rattus norvegicus 81 Mpl ENSRNOG00000028377 ENSRNOT00000034762 2 1 1 80 5 137269743 137270084 CCTAAGTCCTTCTAAGGCCA 59 137269682 137269703 GGAGACTTAGGTAGGATTTCCA 59 NA Rattus norvegicus 81 Fam132a ENSRNOG00000019864 ENSRNOT00000027055 2 1 1 96 5 173393733 173394230 GATTCCAGGCTCCTACTACC 59 173394289 173394307 TGGAAGATGGCAGAGACTG 59 NA Rattus norvegicus 81 Tm9sf1 ENSRNOG00000019710 ENSRNOT00000026734 3 1 1 81 15 34319865 34319884 CTCCATGTCGTGGTCTACTC 60 34319549 34319821 GCCATGACAATGATGCCAG 60 NA Rattus norvegicus 81 Pbk ENSRNOG00000015308 ENSRNOT00000064306 2 1 1 82 15 42495644 42495662 CAAAGACAGTGGAAGTCCT 57 42495707 42496851 GATGCAGATACTTTAGCCCT 57 NA Rattus norvegicus 81 Pbk ENSRNOG00000015308 ENSRNOT00000064306 3 1 1 82 15 42495643 42495661 ACAAAGACAGTGGAAGTCC 57 42495706 42496850 ATGCAGATACTTTAGCCCTC 57 NA Rattus norvegicus 81 Lhfpl5 ENSRNOG00000022283 ENSRNOT00000036999 1 1 1 81 20 5819732 5819750 TTCTTGGCTTTCGTGTTGG 59 5819795 5822840 TTCAGACTTCCTCGTTCCC 59 NA Rattus norvegicus 81 Adrbk1 ENSRNOG00000018985 ENSRNOT00000025847 2 1 1 80 1 219537925 219538024 CTTCTTACAGAAGTACCCTCC 57 219537865 219537883 AAGGAGCCAATGTCAAAGG 58 NA Rattus norvegicus 81 Rup2 ENSRNOG00000045799 ENSRNOT00000042860 3 1 1 82 8 41658686 41659160 GTAGTAACCACTCGAGATGGA 59 41659204 41659222 CTTCCATGCTCAACAGTCG 59 NA Rattus norvegicus 81 Brpf3 ENSRNOG00000028641 ENSRNOT00000042143 2 1 1 81 20 6064316 6064619 TCAGTGAGGTTCCAGATTACC 59 6064662 6064680 AGGTGAGATTCCAGCTTCC 59 NA Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 3 1 1 80 X 23677444 23680115 TTCTGTGTCCAGGTGTGAG 59 23680159 23680177 AGGACAAGCATAAGTGGCA 59 NA Rattus norvegicus 81 Pacsin1 ENSRNOG00000054603 ENSRNOT00000090820 3 1 1 80 20 7282816 7282950 AACAGCAGAAGAAAGTGGC 59 7283009 7283029 GCACCTTCTCATACTTCTCCT 59 NA Rattus norvegicus 81 Olr202 ENSRNOG00000025819 ENSRNOT00000035798 1 1 1 60 1 170185559 170185579 GAGTGAAGACTAAGCAGATCC 58 170185519 170185540 TGAGTCTTAATGTCCAAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan2 ENSRNOG00000022164 ENSRNOT00000034267 3 1 1 125 1 142679828 142679846 CTGAGGTGAATCCAGAGGG 59 142679934 142682111 AACAAGAAACACTGCCTCTC 59 NA InUTR Rattus norvegicus 81 Olr74 ENSRNOG00000015689 ENSRNOT00000021006 3 1 1 60 1 168197444 168197465 AGAGTTAATCGTGGATATGGAC 58 168197483 168197504 CAATTATGTCAAAGCCAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd11 ENSRNOG00000012333 ENSRNOT00000016420 3 1 1 68 16 79698553 79698573 TGGATGGTACCATCTACTGTG 59 79698505 79698523 CCTCAGTGTCCTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mycs ENSRNOG00000003085 ENSRNOT00000004118 2 1 1 60 X 17824734 17824753 AGTACATCCACACTTTGCAG 58 17824774 17824794 TACAGTTTCTCCCTTTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mto1 ENSRNOG00000037659 ENSRNOT00000057138 1 1 1 80 8 85809686 85809704 CTAGTTCTTGCAGAGCCAG 58 85809747 85812591 CATTGTACTTCCATCAGCCA 58 NA Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 2 1 1 60 1 170864617 170864635 ATTGTGGTTGGGATGTGGT 60 170864659 170864677 GGAATTGACTGGGAAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351,ENSRNOT00000070912 1 2 2 80 3 109863512 109863533 AGAATGTGAGGTTTGTCTTTGG 59 109863573 109863826 GAAGGACGTTGGTAGAACTG 58 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917,ENSRNOT00000080185,ENSRNOT00000065065 1 3 3 80 2 188409795 188411916 GGATCAAAGAGGTCCTGGAG 60 188409734 188409753 GTTCCTGGAAGGTCTGTACC 60 NA Rattus norvegicus 81 H2afx ENSRNOG00000010386 ENSRNOT00000059715 1 1 1 67 8 48665862 48665880 GTGCTCGAGTACCTCACTG 60 48665911 48665929 GTCTTCTTGTTGTCCCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr186 ENSRNOG00000049981 ENSRNOT00000050034 1 1 1 60 1 169919809 169919827 GTACAGCATGATCCTCACC 58 169919849 169919869 CCTGACTATGATGACTACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 2 1 1 80 16 2546790 2549194 CCTCTTCTTACAGCTGTTCTG 59 2549236 2549254 CCGAAGATTGACATTCGCT 58 NA Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 3 1 1 80 16 2549417 2552875 CTACTACTGCAGAAAGGAGCT 59 2552917 2552935 CCCTCCTCTAACAGCTTCG 60 NA Rattus norvegicus 81 Ctag2 ENSRNOG00000012560 ENSRNOT00000016754 1 1 1 80 X 148422461 148422640 TTCTCACTGTTAGGTGGACC 59 148422681 148422701 CAAGTGAAAGGTGGTCTAGGA 60 NA Rattus norvegicus 81 RGD1562550 ENSRNOG00000027263 ENSRNOT00000037659 1 1 1 89 2 52362527 52362546 GCAGAAGTTCTCTTAGCTGG 58 52362598 52364842 TAAAGCGGCCTGTAAAGAG 58 NA Rattus norvegicus 81 Ccr1 ENSRNOG00000006715 ENSRNOT00000008772 2 1 1 127 8 132998201 133001928 TGGAAACACAGACTCATTGTC 59 132998094 132998114 GTCATATTCTGTGGTTGTGGG 59 NA InUTR Rattus norvegicus 81 Ppp1r12c ENSRNOG00000053828 ENSRNOT00000086122 3 1 1 81 1 72923919 72923937 GAGGAGTCTGAGTCTCAGC 59 72923980 72924085 CTGTCAAAGTTACACCCTGTG 59 NA Rattus norvegicus 81 Mogat2 ENSRNOG00000027228 ENSRNOT00000035774 2 1 1 99 1 164186156 164196136 CTGTCTCTTTGGTCAAGACAG 59 164186077 164186095 AGGTTAAGAAAGGCTCCGG 59 NA Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000014761 3 1 2 85 2 45813981 45858986 AGAACTTGGAGGAGCTGAC 59 45859031 45859053 CGCTGTCTAATACGAATATGACC 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 2 2 6 125 1 76558943 76572735 CTCATGAGGAAAGGCACTG 58 76558836 76558855 TTATTCCCATGGGAACATCC 57 NA Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 3 1 1 60 8 43873560 43873579 CAATAGTCACTCCGATGCTC 58 43873600 43873620 CGCTTGACTTCCTTGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11a ENSRNOG00000015003 ENSRNOT00000020229 2 1 1 82 1 141478604 141478622 GTCTAAGGCTGGCAAAGAG 58 141476161 141478558 GTCTGAACCATTTACGGCC 59 NA Rattus norvegicus 81 Olr1303 ENSRNOG00000046665 ENSRNOT00000071348 2 1 1 60 8 43208611 43208632 GTTCACTTAACGTTATTGTCCC 58 43208572 43208591 GCCATGATGAAGATGTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777,ENSRNOT00000086721 1 2 2 80 X 29611140 29613828 CGGCAATACGGTATCATTCC 59 29611079 29611099 ATTGGTGTTGCAGATGTTCTC 59 NA Rattus norvegicus 81 Mir1912 ENSRNOG00000046748 ENSRNOT00000071202 2 1 1 60 X 118130664 118130682 GATGTGCTCATTGCATGGG 60 118130705 118130724 TTCTCACTGCATGTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 2 2 2 81 2 30314082 30319940 ATAGACAAAGCCTTCCAGGA 59 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Itpr3 ENSRNOG00000052795 ENSRNOT00000090925 2 1 1 80 20 5688296 5690757 AGATCCTGCAGTTCATCCTC 59 5690797 5690818 CCACAAACTCCTTCTTGAAGAC 60 NA Rattus norvegicus 81 Rn60_X_0594.3 ENSRNOG00000051140 ENSRNOT00000076295 1 1 1 60 X 58544739 58544760 AGAGGATGCTGGCTATTAAGAG 60 58544779 58544799 TTTCTCTTCTTGTCACCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r14b ENSRNOG00000021151 ENSRNOT00000051749 3 1 1 81 1 222231183 222231201 AGAGCTGGAGATCGATGTG 59 222231245 222231492 AACTAGCAGCTCCTTGACTC 60 NA Rattus norvegicus 81 Irx2 ENSRNOG00000012742 ENSRNOT00000017019 1 1 1 80 1 33273684 33273702 TTCCAGAAGCAAGGAGGAG 59 33273340 33273641 TGTAGACTGATCCCTTCGTC 59 NA Rattus norvegicus 81 Ecsit ENSRNOG00000014128 ENSRNOT00000019115 1 1 1 80 8 23086839 23086859 TCTCTGGCTTCGTAATAAGTG 58 23086435 23086798 TCCTCTACTGTCTCTTCCTC 57 NA Rattus norvegicus 81 AABR07004678.2 ENSRNOG00000054697 ENSRNOT00000082185 2 1 1 60 1 149770623 149770643 ATCACTCTGGATCTGAAACTC 57 149770583 149770602 ACAGGGACAGATTCTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 1 2 2 84 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780747 132780768 GTTGATTTCCTTGATCAAGCTG 58 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 2 2 2 86 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780745 132780766 CTGTTGATTTCCTTGATCAAGC 58 NA Rattus norvegicus 81 Rn60_X_0551.2 ENSRNOG00000028179 ENSRNOT00000050661 1 1 1 60 X 54806393 54806411 TGACATCCTCAAGAAAGCC 58 54806351 54806369 TTCCTTCACCTCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912580 ENSRNOG00000049807 ENSRNOT00000074733 3 1 1 60 3 158936850 158936868 CCTCATCACTGCATTGGGA 60 158936808 158936827 AAGGTGAGAATTCAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 1 2 2 80 2 46983766 46983785 CAATCAGTGGAGGATAGTGC 58 46983825 46987453 ATCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 Dpy19l4 ENSRNOG00000025416 ENSRNOT00000037869 1 1 1 80 5 24545527 24545547 GCAACAGATGTCTTTGTACCC 60 24544923 24545487 ACTGGTTCAATCACTTCATGG 59 NA Rattus norvegicus 81 Cyp2r1 ENSRNOG00000011367 ENSRNOT00000067609 3 1 1 82 1 184095575 184095593 ATCCTGAGCGATTTCTGGA 59 184094281 184095530 ACAGTGTCTTCTCCCTAGAG 58 NA Rattus norvegicus 81 LOC102554637 ENSRNOG00000049855 ENSRNOT00000044960 2 1 1 111 4 70743615 70744006 CTTCGGTGTCAATGATCCTG 59 70743523 70743542 AGCACAGACCATGTTATTGG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 1 4 6 80 17 84141180 84142917 AGCAAATCTAAGGACCTACCG 60 84141120 84141139 TAGTCACCATCTCGGAAGGA 60 NA Rattus norvegicus 81 Sh3bp2 ENSRNOG00000013747 ENSRNOT00000058111 2 1 1 80 14 81439937 81441583 GAAACTTGAAGATGCCCTGAC 60 81439877 81439895 TCAGAGAAGGTTGGCTTCC 59 NA Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 1 2 2 80 6 50930789 50930808 CCATAGTTGCTAACGGAGAC 58 50930087 50930746 CCATTACACCATCTGTCCC 58 NA Rattus norvegicus 81 Sc5d ENSRNOG00000008305 ENSRNOT00000011284 3 1 1 80 8 46531627 46531645 GTCATTGTTCCTGCTGGAG 59 46530074 46531584 AGATGAATCCAGCCATTTGG 58 NA Rattus norvegicus 81 Vsig10l ENSRNOG00000023411 ENSRNOT00000039446 3 1 1 85 1 98461418 98461436 TGACCTCAGTGGAAACCTC 59 98459891 98461369 GCTGATGACTTGTTGAGCC 59 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000028731 3 1 2 81 1 222246314 222246332 GGAATGAAGTGAGGCATGG 59 222245176 222246271 TAATTAGTAGGGACAGGCCTG 59 NA Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000031935,ENSRNOT00000079850 2 2 2 80 17 10152160 10152329 CCGAGATTGAGAGTGACAG 57 10152373 10152391 CATCAGACGTCAGAGTCAG 57 NA Rattus norvegicus 81 Rn60_6_0026.1 ENSRNOG00000015559 ENSRNOT00000020833 3 1 1 60 6 2557164 2557182 TTGCCCATGATGTAGACCC 60 2557122 2557140 ATCTTTCGACAAAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt8 ENSRNOG00000020245 ENSRNOT00000027454 1 1 1 80 1 215605727 215605747 AAGCAACCCAAGGATAAAGAG 58 215605789 215606197 CACATCTGGTTGAACCAGG 59 NA Rattus norvegicus 81 LOC100910373 ENSRNOG00000021490 ENSRNOT00000049921 2 1 1 80 8 44559104 44559122 TCAGAAACAAACAGCCGAC 59 44549296 44559063 TGCTCCATATCTGTATCATTGG 58 NA Rattus norvegicus 81 Mageb7 ENSRNOG00000042751 ENSRNOT00000065450 1 1 1 60 X 54939472 54939491 AATGCTGAATGTTGTCACCA 58 54939431 54939451 GGCTTTCTTAAGGATCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd1 ENSRNOG00000019529 ENSRNOT00000026595 2 1 1 80 1 143611945 143611967 GGTCATGTTCAAAGAACCTATCG 60 143611369 143611906 TGAGAATCTGGACCCTTGAG 59 NA Rattus norvegicus 81 Dmpk ENSRNOG00000015085 ENSRNOT00000020428 3 1 1 80 1 79994007 79996445 GGCCTCAAGAGACAATCAG 58 79996489 79996507 CCTTGCAAGTCTGACACAG 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 2 2 2 80 4 64681869 64681888 ACATCCTCTTGGTCTTCCTG 59 64660470 64681827 TTCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Mfsd2a ENSRNOG00000014008 ENSRNOT00000019080 3 1 1 80 5 140653001 140653019 CTTCACTGACCCTCTCGTG 60 140648077 140652958 AAGATGATCCAGGGCATGAG 60 NA Rattus norvegicus 81 Zmat2 ENSRNOG00000016016 ENSRNOT00000021516 2 1 1 80 18 29641210 29642313 GAAATGGGAGGCTACTACTG 58 29642353 29642374 CTTTCCATTAATGTGATCCAGG 57 NA Rattus norvegicus 81 Fshr ENSRNOG00000016783 ENSRNOT00000022802 2 1 1 81 6 12895669 12997610 GAACGCCATTGAACTGAGG 59 12895606 12895624 CTCCAGGTCTCCAAATCCA 59 NA Rattus norvegicus 81 Cdc42ep2 ENSRNOG00000020904 ENSRNOT00000028379 2 1 1 81 1 221273784 221281162 TCCTCAAGCTTCTCAACTCTG 60 221273723 221273743 AGAAAGGTGAGATCTCAGCAG 60 NA InUTR Rattus norvegicus 81 Olr126 ENSRNOG00000029612 ENSRNOT00000043967 3 1 1 60 1 168883052 168883074 CTACAGAACTACCGTTATCTCCC 60 168883014 168883033 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cecr5 ENSRNOG00000011338 ENSRNOT00000015090 3 1 1 80 4 153048170 153048352 CTGTATGCTATAGGTGATAACCCT 60 153048113 153048131 ACCATTTGCCATTTGCAGG 60 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190,ENSRNOT00000010546 2 2 2 82 6 96165616 96165635 TAACAAGGAGATGCTGTGCA 60 96165190 96165572 GGTCATTCTGTAGACCGAGG 60 NA Rattus norvegicus 81 AC126148.3 ENSRNOG00000060849 ENSRNOT00000083585 3 1 1 80 1 222521510 222521529 AGTCGAACTAGTGTGATGGA 58 222521570 222521679 CTCTTCTAGCTCATCACTGTC 58 NA Rattus norvegicus 81 Gtf2a1l ENSRNOG00000016703 ENSRNOT00000022380 2 1 1 80 6 12465575 12465594 GATGATGTCAGTGAGCAGGA 60 12465633 12468333 CCGGTGAATCTTATCATACTGAC 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000073521 3 1 5 80 1 87861203 87910937 GTCTTCTATCAGAAGTCACACC 58 87910974 87910996 GCCACATTCCTTACACTTATAGG 59 NA Rattus norvegicus 81 Tbc1d10a ENSRNOG00000006394 ENSRNOT00000008788 1 1 1 80 14 84443949 84443969 CAGTATGAAACCATCGAGCAG 59 84444010 84444575 CTCTATCACCTCCTGAACCA 58 NA Rattus norvegicus 81 Mcm2 ENSRNOG00000016316 ENSRNOT00000022231 2 1 1 80 4 120833995 120834760 AGTGATATGTGCAAAGAGAACC 59 120833936 120833955 GTATGCCAACACATGTTCCC 60 NA Rattus norvegicus 81 Them5 ENSRNOG00000043445 ENSRNOT00000066020 1 1 1 80 2 195584044 195584063 CTCCTTCAAGTCCAACAGAG 58 195584106 195585029 CAGTCCTGTTTGTCTGAGG 58 NA Rattus norvegicus 81 RGD1563159 ENSRNOG00000042727 ENSRNOT00000064799 3 1 1 80 18 30801817 30801964 TCAACTACTTTAAGGTGCCGA 60 30801757 30801775 TATGATACAGCTGCGTGCA 60 NA Rattus norvegicus 81 Phex ENSRNOG00000023440 ENSRNOT00000010970 3 1 1 80 X 40530640 40534242 CCGAAGCCAAATCTTATCGT 59 40534284 40534303 CTCGAGAGCTATTAGCTCCT 58 NA Rattus norvegicus 81 Ephb1 ENSRNOG00000007865 ENSRNOT00000010634 2 1 1 80 8 110419484 110419502 TGTCTGACTTTGGCCTCTC 59 110392457 110419441 GTATCTTCCCTCCCAAGGAG 59 NA Rattus norvegicus 81 Ly86 ENSRNOG00000000137 ENSRNOT00000000149 1 1 1 80 17 28147054 28178663 GTCTACCAGAGCTGTGATCC 60 28146993 28147013 GTTGAGATTTGGCTGGATCTG 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 1 2 2 80 17 38461286 38462011 TCATTGCTCAAATTGGTTCG 57 38462053 38462072 CAGATGCAATGATGGAAGTC 57 NA Rattus norvegicus 81 Rn60_X_0586.1 ENSRNOG00000051324 ENSRNOT00000076188 3 1 1 60 X 57715402 57715421 ATGGAGGCTTATCTATCCCT 57 57715361 57715382 TTGCTTTCAGAGACATAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000045994 2 1 2 80 1 66959792 66959813 GCCGAAAGACCAGATTATAGAG 59 66959854 66969428 GACAGAGTCTGTGGAATGC 58 NA Rattus norvegicus 81 Guca2a ENSRNOG00000008849 ENSRNOT00000011867 3 1 1 92 5 138685645 138685663 CATGAATGCCTGGTTGCTG 60 138685718 138686514 AAGGAAAGGTCTCCATCCTG 59 NA InUTR Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 1 2 2 80 1 167489809 167506849 CATCAGAAGTGTATAACTGGACC 59 167506889 167506907 TCTCCTCATACTGTGGCAG 59 NA Rattus norvegicus 81 Tmem154 ENSRNOG00000010866 ENSRNOT00000014433 2 1 1 80 2 183694538 183700007 CCCAAGCAGGATGATCTAGG 60 183700954 183700975 CTCTATTTCCATAACGGAGGGT 60 NA Rattus norvegicus 81 Cdc20 ENSRNOG00000028415 ENSRNOT00000036151 3 1 1 80 5 137263955 137263974 AGGCTTGCAGATACATTCCT 59 137263799 137263917 CAAGATTCAGGTAGTAGTCATTCC 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386,ENSRNOT00000084777,ENSRNOT00000087120 1 3 3 87 4 7217200 7217219 ATCCTTGAACAAGGAGTGGA 59 7212054 7217150 CATGTAATCGTGCAGGCTG 59 NA Rattus norvegicus 81 Pfdn1 ENSRNOG00000018653 ENSRNOT00000025353 3 1 1 80 18 29286888 29290402 CTGGAGTTGAAGAAGGCCT 59 29286826 29286846 CTGTATGTCTGCAAGCTTCAC 60 NA Rattus norvegicus 81 Coq10b ENSRNOG00000014456 ENSRNOT00000040461 3 1 1 85 9 61664533 61667257 TGGTAAAGGCCTCTTGTACTG 60 61667304 61667322 TGGATAGCCAGGAAGACCT 60 NA Rattus norvegicus 81 Ttc28 ENSRNOG00000032590 ENSRNOT00000046920 1 1 1 80 12 51584080 51584098 TGGTCTCTTGGGAACACAG 59 51583041 51584036 TGTCTGGTCACCTAAGGTC 58 NA Rattus norvegicus 81 Prl7a3 ENSRNOG00000016616 ENSRNOT00000022381 3 1 1 80 17 39034712 39035447 GGATGTATGCAGTCAACGA 58 39041088 39041106 CCACGAACTCCATATCCTC 57 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 3 2 2 80 1 189905628 189905648 TGAAGCTCTTGTTCTCAAGTC 58 189905463 189905586 AAGCCACAGAAAGATCTGG 57 NA Rattus norvegicus 81 Ndufaf6 ENSRNOG00000040040 ENSRNOT00000061569 3 1 1 80 5 24317715 24317734 TTACTGTTCCCTGCAGAGTG 60 24314702 24317672 CGAGTCCTTAACCTGAGCC 60 NA Rattus norvegicus 81 LOC100362110 ENSRNOG00000030481 ENSRNOT00000046719 1 1 1 80 13 41806015 41806033 CTGTTTCGGCTCCTTACAG 58 41806074 41808333 ATGACAGATCCTTCATGAACAG 58 NA Rattus norvegicus 81 Ppidl1 ENSRNOG00000037230 ENSRNOT00000056255 1 1 1 60 9 121457683 121457703 GACCCTTCAAACACTAAAGCA 59 121457722 121457743 ATTCTTTCAATCCTTGCCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC128084.1 ENSRNOG00000056310 ENSRNOT00000040493 1 1 1 60 9 65172478 65172497 CATCAAGCACTCAAAGAGCA 59 65172518 65172538 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb13 ENSRNOG00000028194 ENSRNOT00000031789 2 1 1 80 13 27051125 27061746 ATGGCCTAGAGAAGATAATCGA 58 27061787 27061805 TCCTTTGCTTCAGTTGTCC 58 NA Rattus norvegicus 81 Olr1238 ENSRNOG00000049454 ENSRNOT00000044272 1 1 1 60 8 42296985 42297003 GTTCATCTAAGGGCAGGTC 58 42297025 42297045 GAAACAACAATGATGTGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msto1 ENSRNOG00000020357 ENSRNOT00000027579 1 1 1 80 2 188213605 188213696 TTTCTCTGGGAAGAAGGTGG 59 188213544 188213564 AGAATGTCAGGAAGTGACTGG 60 NA Rattus norvegicus 81 Sik1 ENSRNOG00000001189 ENSRNOT00000001579 3 1 1 81 20 10678697 10678715 TGGAGAAGATCTACCGGGA 59 10676169 10678654 GTCTCCATAACCTGGTAAAGC 59 NA Rattus norvegicus 81 Zfp28 ENSRNOG00000042777 ENSRNOT00000020523 2 1 1 80 1 71172759 71172778 CCAGATATGATTGCCTTGCT 58 71171666 71172716 CACAGCCTTCAAGTCTGTG 59 NA Rattus norvegicus 81 RGD1311847 ENSRNOG00000023700 ENSRNOT00000030617 3 1 1 80 16 19092035 19093265 AAAGGTGTTCTTGGATCTGAC 58 19091975 19091994 GTCGACTTTAAGCTGGACTG 59 NA Rattus norvegicus 81 Asb18 ENSRNOG00000019557 ENSRNOT00000040169 3 1 1 81 9 97130290 97151635 ATTGCTAGGAGACCTGGAC 59 97130227 97130246 AGTACTGATCTCGAACACCA 58 NA Rattus norvegicus 81 Hars2 ENSRNOG00000016087 ENSRNOT00000021797 1 1 1 80 18 29632311 29633408 CGCTATGACCTTACTGTCC 57 29633452 29633470 CTTTCCCACTTGATACCGT 57 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501,ENSRNOT00000078838 1 2 2 80 14 84742516 84748617 GGAGTCTCTTGTGAATGTTCC 59 84742456 84742475 TTGCATGTCAAGTGAAGCTG 60 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501,ENSRNOT00000078838 3 2 2 80 14 84712577 84712598 CTTGACTGTGTTCATCAACTCC 60 84711880 84712536 CTGAACCAGCTTCACAAGG 59 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 3 2 2 95 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960734 18962014 TCAGGAACACCTTACACGA 58 NA Rattus norvegicus 81 Pvrl3 ENSRNOG00000002176 ENSRNOT00000002957 2 1 1 80 11 57960776 57965364 GTGACTGTGCTAGTTGAACC 59 57960715 57960734 TGCTACGGTCTCATTTCCTC 60 NA Rattus norvegicus 81 Dnaja2 ENSRNOG00000016251 ENSRNOT00000022573 2 1 1 80 19 22577714 22577732 TGATAAGACAGCTGGCTCC 59 22577775 22579843 TGATGACCTCTCCTTCTCCA 60 NA Rattus norvegicus 81 AABR07020786.1 ENSRNOG00000039928 ENSRNOT00000049137 3 1 1 88 13 40300456 40300474 GACTACAGCAGATCCTCGG 59 40300527 40300545 TAACTTACCACTTGGTCGC 58 NA DesignNoJunction Rattus norvegicus 81 Gja8 ENSRNOG00000046703 ENSRNOT00000071622 2 1 1 60 2 199051896 199051915 GCCACATCATCTTCAAGACC 59 199051855 199051874 TACAGGAAGTAATGGCCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb2 ENSRNOG00000002460 ENSRNOT00000003409 3 1 1 80 13 27460458 27461968 CTTGGAGATGCTGGAAAGG 58 27462010 27462030 ACATCATCTTCATCCAGTGTC 58 NA Rattus norvegicus 81 Rspo4 ENSRNOG00000009662 ENSRNOT00000012951 2 1 1 82 3 147386817 147386835 GGAAGAGATGGCAAGTTGC 59 147386880 147389618 TGGGATTTCTTTCTCCTGGG 59 NA Rattus norvegicus 81 Dock5 ENSRNOG00000024703 ENSRNOT00000058887 2 1 1 80 15 44533336 44534907 AGTCCACCTTCATCAGTGAG 59 44533275 44533297 GGTTATTGAGCTTCTCTATCTCC 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000085988,ENSRNOT00000019059 1 2 2 80 1 141880341 141880360 CACTCAGAAGTACAGTGTGG 58 141878698 141880300 TTCTTCAGCTTGAACTCTTCC 58 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 1 1 1 64 6 6180546 6180566 GCTGTATCTTATCTGGACCAG 58 6180589 6180612 GCTTTAGAAACCAATTTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Naaladl1 ENSRNOG00000021000 ENSRNOT00000054835 3 1 1 80 1 221480818 221480952 CCACCAAAGAGATCAGTGC 59 221480993 221481014 GACTACTGCGGTTAGTATATCG 58 NA Rattus norvegicus 81 LOC100361637 ENSRNOG00000048099 ENSRNOT00000066802 3 1 1 95 15 29903540 29903711 AATACTCAGAAGGAGCAATGGA 59 29903466 29903484 TGATAGGTGCAGTTCAGCA 59 NA Rattus norvegicus 81 AABR07053879.1 ENSRNOG00000027574 ENSRNOT00000030148 1 1 1 96 3 132053457 132053475 CAACTTCAACAGCAGCTCC 60 132053533 132053577 CACCCTGTTGCAGTAAATGAG 60 NA Rattus norvegicus 81 Snrpe ENSRNOG00000031127 ENSRNOT00000042614 2 1 1 60 8 129371833 129371854 GTATGAACAAGTGAATATGCGG 58 129371794 129371815 GTTCATGTACTCATCAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnpda1 ENSRNOG00000047213 ENSRNOT00000071560 3 1 1 81 18 31483494 31483512 ATGGTGATCTTGCCAAGGT 59 31481915 31483451 AGGATCATCACCTCTTTAGCA 59 NA Rattus norvegicus 81 Nrsn1 ENSRNOG00000017444 ENSRNOT00000023519 3 1 1 87 17 41806433 41806453 CCTCTATCTGGGAGTATGAGG 58 41806502 41815378 GAGATGAGTCCGACCTTCC 59 NA Rattus norvegicus 81 Kdm6b ENSRNOG00000037613 ENSRNOT00000067677 3 1 1 80 10 56005570 56005589 GTGAAACCGAAGATCAACAC 57 56005403 56005528 GCTCTCCAAATAAATGCTGG 57 NA Rattus norvegicus 81 Zfp791 ENSRNOG00000023920 ENSRNOT00000037766 2 1 1 86 19 26243144 26243165 ATCAGTACAGAATCCAAGAGGA 59 26239278 26239299 TTTCTCTATGCTGAGTAACCTC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100911241 ENSRNOG00000039251 ENSRNOT00000060114 2 1 1 82 18 35291730 35291748 CTCAGCAACATGAAGCCAG 59 35291794 35293375 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Gabra1 ENSRNOG00000003512 ENSRNOT00000004725 1 1 1 80 10 27315423 27320061 CTGTCTTTGGAGTGACGAC 58 27315361 27315379 CATAAGCCACCTTTGGGAG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 3 1 1 86 1 67371549 67372156 CATCATCCCTCCTCAGGTG 59 67371481 67371500 CTATGCATGAAGTCCAGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Mir103-1 ENSRNOG00000035503 ENSRNOT00000053626 3 1 1 60 10 20606728 20606746 CGGCTTCTTTACAGTGCTG 59 20606770 20606788 TCATAGCCCTGTACAATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdx2 ENSRNOG00000003520 ENSRNOT00000004799 2 1 1 107 19 26085528 26085638 CTACAGAGGGAAGTACGTGG 59 26085708 26085726 AGCTTTCGGAAGTCCTCAG 59 NA Rattus norvegicus 81 Prdx2 ENSRNOG00000003520 ENSRNOT00000004799 3 1 1 108 19 26085527 26085637 ACTACAGAGGGAAGTACGTG 59 26085708 26085726 AGCTTTCGGAAGTCCTCAG 59 NA Rattus norvegicus 81 Tmigd1 ENSRNOG00000003865 ENSRNOT00000005129 2 1 1 80 10 63272100 63274510 ACAGGGAAGGACAAGTTCTG 60 63272039 63272061 GCTTGGATACCATAGTAAGTGTC 59 NA Rattus norvegicus 81 Gadd45g ENSRNOG00000013090 ENSRNOT00000018252 3 1 1 94 17 13392561 13392579 AGCATTGCACGAACTTCTG 59 13392383 13392503 TGTCAGGGTCCACATTCAG 59 NA Rattus norvegicus 81 Aldh5a1 ENSRNOG00000023538 ENSRNOT00000031384 1 1 1 80 17 42140861 42140879 GCTCCGTAAATGGTACGAC 58 42140923 42142292 AGTGGCTTTCCACTCTCAG 59 NA Rattus norvegicus 81 Sstr1 ENSRNOG00000048145 ENSRNOT00000073970 1 1 1 75 6 79254397 79254416 CCTGAAATCTCCAGGTACAG 57 79254821 79254839 TAATAAGCAGCACCATCGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Brsk1 ENSRNOG00000017673 ENSRNOT00000031172 3 1 1 80 1 72706829 72706847 GTGGTAGAGACCATCCAGG 59 72701929 72706786 TCCATTCTTCTCATCTGCCA 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 2 2 2 84 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351302 18351320 TCATAGGAGGCTACCAGCA 60 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000032937 3 1 2 81 1 227763115 227814924 AAATCTTTGGTAGATGGCAGC 59 227814965 227814985 TGGCAGACATGATAATGATGC 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600,ENSRNOT00000084258 3 2 2 87 6 83426396 83426414 CTTGCAGTTAGCTAGCTGC 59 83426465 83431872 AGTCAGCAAAGCATTTGGC 60 NA Rattus norvegicus 81 Rp1l1 ENSRNOG00000046326 ENSRNOT00000070815 1 1 1 88 15 47373747 47377203 GGGAAGAAGGTGGACTCTC 59 47377255 47377273 ATCTCCAGACGTCTGAAGG 59 NA Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 1 1 1 60 1 170072611 170072629 TCTATCTCCTTGTGCCACC 59 170072569 170072587 ATCTGTCGAGTCTTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 3 1 1 60 1 170072799 170072818 TTTCCTATGCCCTCATCCTC 59 170072758 170072777 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gss ENSRNOG00000018964 ENSRNOT00000025657 2 1 1 80 3 151086296 151086314 TGCTCAGGAGAAGGAAAGG 59 151086144 151086254 CGGATTACATGGATCTTCCTG 58 NA Rattus norvegicus 81 Pkdcc ENSRNOG00000004205 ENSRNOT00000005664 1 1 1 82 6 6432017 6432881 GATTCCGAATCTGCCTCAG 58 6432927 6432945 GAAGTCAAGCAGAGTGACC 58 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384,ENSRNOT00000079335 1 2 2 86 1 190591156 190591177 TCGAGGCTTTATTGAAATACCC 59 190586544 190591110 TTTGGTGTATGTGGGATTGG 58 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 1 2 2 80 18 37007714 37007732 ACCAGAGACTATCTGACCG 58 36988929 37007673 GTAGTCATGAACCTGGTATGTC 58 NA Rattus norvegicus 81 Taar7d ENSRNOG00000045914 ENSRNOT00000051416 2 1 1 60 1 22488018 22488037 ACCTGAACAGATCCTGTGTC 60 22487977 22487995 GCATAGAGGATGAGGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angptl4 ENSRNOG00000007545 ENSRNOT00000010031 2 1 1 80 7 18630002 18630925 CTGTGAGATGACTTCAGATGGA 60 18629943 18629963 TCCCAAGACTGATTGAAGTCC 60 NA Rattus norvegicus 81 Vom2r46 ENSRNOG00000030104 ENSRNOT00000031015 1 1 1 80 2 154672955 154730040 GCCTTTGATGTCCTTCTGG 59 154672893 154672916 CCCTTCATAATAGTTATCTGGCAG 59 NA Rattus norvegicus 81 Npy5r ENSRNOG00000014172 ENSRNOT00000018976 3 1 1 81 16 24797348 24802913 ATCCCGAGGATTCTAGTATGGA 60 24802954 24802973 GCAGCAGCTGTATTGTTCTC 60 NA InUTR Rattus norvegicus 81 Hdhd3 ENSRNOG00000015195 ENSRNOT00000020380 1 1 1 188 5 78359254 78361537 AGGATCTTGTGCTGAAAGAC 58 78359085 78359103 TCAGTAGACGCATCTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gcm2 ENSRNOG00000015008 ENSRNOT00000020244 3 1 1 107 17 21495135 21495153 ATTCAGCTTTGGAGCTGGT 60 21495224 21495914 CATGAACTCCTTTGGCCTG 59 NA Rattus norvegicus 81 Gpr108 ENSRNOG00000046128 ENSRNOT00000075403 1 1 1 80 9 9710221 9710239 AGTACAGCCTCAACTTCCA 58 9710282 9711505 CTCGGATCATTACAGTGAGG 58 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 1 1 2 80 11 60532613 60536078 CATCCATGTGACAGAAAGGAC 59 60531105 60531123 GCATTGGTAGCATTTGGGA 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927,ENSRNOT00000077814 1 2 2 80 18 37965026 37965046 AGAAACATCATCCATGACCTC 58 37963799 37964984 GCAGCTAGACTTTCATCCA 57 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344,ENSRNOT00000019862 2 2 2 80 17 15359742 15359760 TGAAGAGCGTCATTACCAG 57 15358875 15359700 GGTTCTGTAATTCTGTTCCAC 57 NA Rattus norvegicus 81 Slc38a9 ENSRNOG00000009851 ENSRNOT00000013218 3 1 1 80 2 44561974 44564035 TTAATATCCTGGGTACGGTATCTG 60 44564073 44564092 CCAGATGGAATCCTAAGCGA 59 NA Rattus norvegicus 81 Olr1280 ENSRNOG00000050953 ENSRNOT00000073657 2 1 1 60 2 115075122 115075140 TCATGTACCTTCAGCCCTC 59 115075164 115075182 AACACAGACGACACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpap1 ENSRNOG00000005483 ENSRNOT00000007299 1 1 1 80 3 111583282 111583300 CGATGAAGACCCTGAGGAG 59 111582990 111583243 GTATCCCGTTCAACAATCTTAGAC 60 NA Rattus norvegicus 81 Golga3 ENSRNOG00000037437 ENSRNOT00000056656 1 1 1 80 12 52527373 52527391 GATCACGATGACTAGCCAG 58 52526428 52527330 CCTCTGGATTCTTGAAGCTC 58 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 3 2 2 82 20 248554 248573 GTGAATTGTACTTGGCACCA 59 250938 254200 TATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 1 1 1 108 18 32595193 32605362 TCTGCAGCTCCTCAAAGAC 60 32605434 32605452 AGCTGGGATTCAAAGGGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rtf1 ENSRNOG00000005183 ENSRNOT00000056392 1 1 1 80 3 111522994 111523774 GAAGAAGAGAAAGAAGAAATCCCTC 60 111523812 111523830 CCTTGATAACCGAACCCGA 60 NA Rattus norvegicus 81 Rtf1 ENSRNOG00000005183 ENSRNOT00000056392 2 1 1 80 3 111530952 111530972 GCTAAATGAGCTAGAAGAGCG 59 111531012 111531190 TGGTTGATGTAGCTGATAGCA 59 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 1 1 1 60 18 29587660 29587678 CATTCACTTATGCCAGCGT 59 29587487 29587637 CCGTTGCTGGATGAAATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Spib ENSRNOG00000019660 ENSRNOT00000026599 3 1 1 142 1 100535256 100536567 GCTGTTTGTACCCAGAAGG 59 100534881 100534899 GAAAGCTTCATAGGCAGCG 59 NA Rattus norvegicus 81 S100a5 ENSRNOG00000011748 ENSRNOT00000015712 2 1 1 80 2 190004031 190005614 CTTGCAGAGAAGATGAAGGAG 59 190005656 190005674 GAAGTCAATCTCCTGGTCG 58 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000046414 ENSRNOT00000000211 1 1 1 80 3 159003052 159008188 AAGAAGCGAGATAGTTTGATGG 59 159008228 159008247 CTTTGAGGCGTTCACTTCTG 60 NA Rattus norvegicus 81 Fggy ENSRNOG00000008907 ENSRNOT00000011767 2 1 1 80 5 114816565 114822763 TATTCAAGCCATTGCTTTCGG 60 114822799 114822823 AAGAAGAGGGTACTAAGAGAATGTC 60 NA Rattus norvegicus 81 Ppm1g ENSRNOG00000026905 ENSRNOT00000031842 1 1 1 80 6 26533597 26533617 GCTAAGTCCAAGTTCTTTGAG 57 26533656 26534646 ACTACATTCCTCACTGTTATCC 57 NA Rattus norvegicus 81 Pcdh17 ENSRNOG00000008970 ENSRNOT00000045882 3 1 1 80 15 67588829 67643255 CCACTTGAACAAGAACCGG 59 67643294 67643317 CATCCAACATCTATCAGAATGACC 60 NA Rattus norvegicus 81 Csrnp3 ENSRNOG00000005359 ENSRNOT00000007197 3 1 1 115 3 51918867 51995358 GATCTCACGGTACATGTGAC 58 51995436 51995454 GACTTCGTCATCCGATTCC 58 NA Rattus norvegicus 81 Erlin1 ENSRNOG00000012911 ENSRNOT00000017268 1 1 1 80 1 263823136 263824697 TTTGAGTTAATGGAGGCAGAG 58 263823076 263823095 TGTCTCAGCTTCTTTCTCCA 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 3 1 1 80 2 178379570 178379590 TGAAGATGGTAGTGTGAAAGG 58 178376802 178379531 CTCTCAAATGTTGTCTTTGGTG 58 NA Rattus norvegicus 81 Maml1 ENSRNOG00000003268 ENSRNOT00000004361 3 1 1 82 10 35775688 35775709 CTCCTTGTTTCTGATGAAACCA 59 35773497 35775645 TGGAAGGATTCTGCTCCTG 59 NA Rattus norvegicus 81 Tmem176a ENSRNOG00000023708 ENSRNOT00000049891 1 1 1 91 4 78461265 78461730 CATGCTAAAGACCCTGCTC 58 78461783 78461803 AGACACATACAGGGATGAGAG 59 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263 3 1 2 80 8 102127400 102139607 GAAAGTACCCATTATGAACCGAG 59 102127342 102127361 CCTCATGATTGCCAAGATCC 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000025353 ENSRNOT00000071946 3 1 1 80 1 192014507 192014526 CCTGTTTCTGTTCACCACAG 59 192008459 192014465 GATTGTCATACCGAGGTGTC 58 NA Rattus norvegicus 81 RGD1306995 ENSRNOG00000042555 ENSRNOT00000030268 2 1 1 81 11 64489068 64489087 CCTCCATCACAAACAAAGTG 57 64489129 64490029 TCTGTAGTGATATCAGCAGTG 57 NA Rattus norvegicus 81 Rn60_20_0038.2 ENSRNOG00000060724 ENSRNOT00000085984 3 1 1 60 20 1679126 1679150 AGGAGTAAATCAAGGTCTACTACAG 60 1679090 1679112 GCTTCAATTCTTCTCTATGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1303003 ENSRNOG00000001211 ENSRNOT00000001609 2 1 1 171 20 11245269 11246603 GAGAAGGAAAGCAGGAACG 59 11249748 11249766 TAACCTTGCAGTCCTTCCC 59 NA Rattus norvegicus 81 Tmed1 ENSRNOG00000008037 ENSRNOT00000061009 3 1 1 85 8 22541849 22541867 GAGGAGGTAGAAGGTTGGG 59 22541270 22541804 GTCTCTATGGATTCCTTGATGTC 59 NA Rattus norvegicus 81 Slurp1 ENSRNOG00000005944 ENSRNOT00000007923 3 1 1 95 7 115962608 115962626 CACGGCCATTAACTCATGC 60 115962036 115962549 AAAGGGAACTCTGCTTCCA 59 NA Rattus norvegicus 81 Gcg ENSRNOG00000005498 ENSRNOT00000007356 2 1 1 80 3 48446683 48446702 ACAGCAAATACCTGGACTCC 60 48445054 48446641 CAATGTTGTTCCGGTTCCTC 60 NA Rattus norvegicus 81 LOC102554388 ENSRNOG00000048510 ENSRNOT00000071412 2 1 1 60 8 41916767 41916786 ACATTCTTGGTTTCCATGCT 58 41916808 41916827 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per2 ENSRNOG00000020254 ENSRNOT00000027506 3 1 1 80 9 98569274 98569296 GAGGAACTAACCTATAAGAGCCA 59 98569126 98569235 CTCCAGGTACCTGATGACAC 60 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 1 2 2 80 6 49530745 49530763 ACTTCTCACATGCTTCTCC 57 49530804 49532450 GCACAATAGACTAACACTACCA 58 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 3 2 2 81 7 9826344 9826366 TAGATCCTTCCCAGAAGAATCTC 59 9826090 9826305 TCCCATTTACACCCTATACCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 2 2 2 80 19 23937398 23937796 GATCTTAGCATGTCAACACG 57 23937337 23937355 ATCATACCCAGAAGCTCCA 58 NA Rattus norvegicus 81 Olr1217 ENSRNOG00000047328 ENSRNOT00000042784 2 1 1 60 8 40765538 40765559 AATAATACCCAGCCTGACTCTC 60 40765580 40765598 GCTGAGGATGTTGGAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nit2 ENSRNOG00000027797 ENSRNOT00000029420 1 1 1 80 11 45472532 45472872 AGACATAGACCTGAAGAAGCTG 60 45472912 45472931 ACTGAATAGAGGTCTGCTCG 59 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 3 1 1 61 15 18516965 18521110 CAGAATGATGTGCTCATGAGG 59 18516924 18516943 GTAGCAGAGCTGATGAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 2 2 2 101 6 27155933 27189842 TCACCACAATCGGCTATGG 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Prl6a1 ENSRNOG00000017089 ENSRNOT00000022944 2 1 1 83 17 42708112 42708893 GTGTATTTCTGGAGGATGTGC 59 42708049 42708067 TAAATGGTGATCGGTGGCA 59 NA Rattus norvegicus 81 Olr1397 ENSRNOG00000029739 ENSRNOT00000048253 1 1 1 60 10 34727561 34727581 GTAGCACTAATTCTAGGCACC 58 34727602 34727621 TTGACTTGATCTTCAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm2 ENSRNOG00000030871 ENSRNOT00000046240 1 1 1 60 15 65507741 65507761 GATCAATGAAGTAGATGCCGA 58 65507701 65507720 CATTGTCAGGAATTCAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0038.3 ENSRNOG00000058119 ENSRNOT00000083355 2 1 1 60 20 1694538 1694557 CCTTGGTAACTCCCACTCTG 60 1694497 1694521 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a2 ENSRNOG00000001254 ENSRNOT00000001695 1 1 1 80 20 12782383 12782403 TACTGAGATTGACCAGGACAC 59 12782637 12783375 CTCACCTTGTAGCACTCTCC 60 NA Rattus norvegicus 81 Col6a2 ENSRNOG00000001254 ENSRNOT00000001695 3 1 1 80 20 12793605 12793624 CATCGATGACATGGAAGACG 59 12793764 12800152 ACATAGAGCTCTGTTTGGCA 60 NA Rattus norvegicus 81 Pigf ENSRNOG00000015325 ENSRNOT00000020600 2 1 1 80 6 10588666 10588687 TACCTTGTCTGTGTTTGTTAGG 58 10577743 10588626 CCCAAACAGATGTAACTCCA 58 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000060802 1 1 3 92 11 45888302 45888320 AGAGACAAGGATGAGCGAG 59 45888376 45902393 AAATGCAGGAAATGGGCAG 59 NA Rattus norvegicus 81 LOC100362690 ENSRNOG00000046489 ENSRNOT00000030635 3 1 1 82 8 38240254 38240901 GGCTTCCTACAAGCTTTGAC 59 38240940 38240964 TTACAGGTAGAGTATCCTTTCTCAC 60 NA Rattus norvegicus 81 Olr1095 ENSRNOG00000050274 ENSRNOT00000051928 2 1 1 60 7 15622291 15622309 CAGCCAGATGTTCTTCTCC 58 15622332 15622351 CATGACGGTGAGTAGAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 1 2 2 88 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025906 99025927 GCCGAATCTTCTCTTTAAAGTC 58 NA Rattus norvegicus 81 Olr1417 ENSRNOG00000047803 ENSRNOT00000047037 2 1 1 60 10 43997756 43997779 CTGCTATCTATAACTACATGCTCC 59 43997719 43997737 ACCACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 2 1 1 80 2 225865353 225865372 CGGATTCCCAAGAAACAGAG 59 225865410 225866083 CCTTCGATTAAATCTCCTGAACTC 59 NA Rattus norvegicus 81 AABR07069676.1 ENSRNOG00000047150 ENSRNOT00000072224 1 1 1 80 8 37449411 37450252 CCCTTCAAGCTTTGCAGTG 60 37449349 37449371 TCTGGCATATAAGTCTTCCAGTC 60 NA Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 3 1 1 86 1 197677237 197677844 CATCATCCCTCCTCAGGTG 59 197677893 197677912 CTATGCATGAAGTCCAGTGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909989 ENSRNOG00000031423 ENSRNOT00000047107 1 1 1 60 8 42651024 42651042 CCAGCACTTACAACAACGA 58 42651065 42651084 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink3 ENSRNOG00000013464 ENSRNOT00000018110 2 1 1 80 18 38239525 38241985 TTTAGCAGGTAACCCTCCA 58 38238004 38238022 TAAATCCTGGGACATCCCA 58 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 3 1 1 80 3 7946654 8002562 CTACCGCCTCAATATGTGGA 59 8002603 8002623 GGGTCTCGATAAGTGAATGGA 59 NA Rattus norvegicus 81 Vom1r42 ENSRNOG00000028877 ENSRNOT00000041518 3 1 1 60 1 67302175 67302194 ACTGTCCTTCTCTGATGTCC 59 67302134 67302153 TATCATGGAGACACTTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss16 ENSRNOG00000057865 ENSRNOT00000086540 1 1 1 80 17 44557160 44557307 GCTCAGTAATGACAGGGCA 60 44557349 44557369 CATAGAATCTGTGTTCCAGGC 59 NA Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 1 1 1 80 3 55157697 55165598 CCGCCATAACAAAGCATCC 60 55165641 55165660 GTTGAATGCTCCGAACATCC 60 NA Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 3 1 1 80 3 55273070 55273088 TTACATCCTGGAGCTGTCG 59 55273131 55291799 ATAATGCCGAAGTCCTTCCT 59 NA Rattus norvegicus 81 Retnlb ENSRNOG00000032187 ENSRNOT00000046890 3 1 1 101 11 54567003 54567024 AAGATCAAGAAAGCACTCAGTC 59 54565725 54566260 GACAACCATCCCAACAGGA 60 NA Rattus norvegicus 81 Pabpc5 ENSRNOG00000003354 ENSRNOT00000004462 1 1 1 60 X 92131605 92131626 CTTTCCTGTAAAGTCGTATGTG 57 92131644 92131665 CGAAGTGAACATAAGCATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 3 2 2 80 9 66510826 66511916 TTACAGAAAGTTGGAGACAGGA 59 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 LOC499276 ENSRNOG00000022900 ENSRNOT00000031258 1 1 1 91 1 201700927 201702529 AAATTCTACAACTCGGTGGC 59 201700855 201700873 GAGTTCCCTCAGCATCCTC 60 NA Rattus norvegicus 81 Idh3B ENSRNOG00000007316 ENSRNOT00000009681 2 1 1 80 3 122810723 122810837 GAACATGAGAGTGCAAGGG 59 122810661 122810679 GGCAAACTTTGCAATCCTC 58 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000027006 ENSRNOT00000035567 3 1 1 112 10 80953436 80953458 GACCTACTCGTGTGAGGTG 60 80953533 80953552 CACCAGGCTTTACAGAATCC 59 NA Rattus norvegicus 81 Il36g ENSRNOG00000005701 ENSRNOT00000007512 3 1 1 80 3 1286900 1287755 TGTAACTCCAGTCACTGTGAC 60 1287794 1287815 AAATAAATGGGAGTCCCTTTGC 59 NA Rattus norvegicus 81 Olr1735 ENSRNOG00000050043 ENSRNOT00000048856 2 1 1 60 20 1750177 1750197 CCTGCTTCACTCTGTAATGAC 59 1750218 1750237 ATGATGGACATGATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 2 3 3 80 7 116156939 116157196 CTTAAAGAGACCTTGAGGCTC 58 116156879 116156898 ATAGTTCTGAAGCACCAGGT 59 NA Rattus norvegicus 81 Tmem68 ENSRNOG00000008872 ENSRNOT00000012215 2 1 1 84 5 16407341 16407359 CTCACAACTTGTGGGATGG 59 16395749 16407294 TGAACTTCATAACCATGCCA 58 NA Rattus norvegicus 81 Entpd1 ENSRNOG00000014574 ENSRNOT00000054719 3 1 1 80 1 259801905 259802916 GACATTCAGGTTTCAAGTGGT 59 259802957 259802976 TTCGCTTACATTCACAACCT 58 NA Rattus norvegicus 81 Prmt1 ENSRNOG00000026109 ENSRNOT00000064272 1 1 1 80 1 100977699 100977717 CCAATGCTGAGGACATGAC 59 100976381 100977655 CCTTTAGCATCTCCTCGTG 58 NA Rattus norvegicus 81 Glo1 ENSRNOG00000000541 ENSRNOT00000000650 2 1 1 83 20 9279849 9283068 TCTTGGACTGACGCTTCTC 60 9279784 9279803 TCGTTCTTATCCTCGTACGC 60 NA Rattus norvegicus 81 Slc46a3 ENSRNOG00000000937 ENSRNOT00000001243 1 1 1 80 12 8726489 8733012 CATTCCAGGAGGAAGTTCAG 58 8733053 8733073 ACACTAGACCAGGAATTAACC 57 NA Rattus norvegicus 81 Ltk ENSRNOG00000025130 ENSRNOT00000030532 1 1 1 80 3 111556674 111556929 GAGTCCTAATTCTAGTGAACCAG 58 111556616 111556634 TACTCAGCTCAAGCTCAGG 59 NA Rattus norvegicus 81 Bcl2l1-ps1 ENSRNOG00000018503 ENSRNOT00000024954 3 1 1 60 1 167765208 167765231 CTAACATCCCAGCTTCATATAACC 59 167765171 167765190 AAGTGTCCTGTTCAAAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 2 2 2 81 1 165667646 165667666 GACTACTATGAGGTGGTACCC 59 165667086 165667603 CACCAGGACCATAAGGTGG 60 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 3 2 2 80 4 114962585 114964202 CATGGTGGATGATCTCTTCAG 58 114964242 114964262 AGAAATTCATCAACTCCTGCG 59 NA Rattus norvegicus 81 Cdc42se1 ENSRNOG00000060538 ENSRNOT00000086849 2 1 1 81 2 196406558 196407675 GATGGACTTGCCATGACAG 59 196407720 196407738 CCCTAGAGTTGCTCCATGG 60 NA Rattus norvegicus 81 Gfra2 ENSRNOG00000014010 ENSRNOT00000019222 3 1 1 82 15 52636393 52636411 CTCCTACCGGACAATCACC 60 52636455 52637178 TATCAAACCCAATCATGCCAG 59 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 1 2 2 80 17 30699845 30703886 CCTCGAAGAAGAGATAGGAGTC 59 30699786 30699804 CCTTCTCCTATGACCACCC 59 NA Rattus norvegicus 81 Ccdc69 ENSRNOG00000021370 ENSRNOT00000039040 1 1 1 80 10 40397819 40397837 CAGCAGACATCGAATGCAC 60 40395664 40397775 ACACGTGTTCTGCAATGAG 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 1 2 2 80 18 51568426 51568444 GGAAAGCTCTTTGTGTCGG 59 51568485 51571806 GGCTGGGATAGAGATCTTAGTG 60 NA Rattus norvegicus 81 Tmem150a ENSRNOG00000061100 ENSRNOT00000079415 1 1 1 80 4 100218833 100218851 ATCACGGGCATATGGACTG 60 100219292 100219578 ATCATTGTAGGACCAGTTCTCC 60 NA Rattus norvegicus 81 Coq4 ENSRNOG00000026691 ENSRNOT00000038602 3 1 1 81 3 8356113 8356131 CCAGAGATACCGTGAGGTG 59 8356174 8356669 CTTTACCACAACTTCTCCGAG 59 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000023383 1 1 2 80 19 41014739 41014757 AATATCGTCAAAGTGGCCC 58 41013831 41014695 GTCAGCAGCCAACTTACTC 59 NA Rattus norvegicus 81 Rps18 ENSRNOG00000028505 ENSRNOT00000037499 1 1 1 122 20 5442476 5444964 CACTGCCATTAAGGGTGTG 59 5445050 5445068 ATGATGGTGATCACACGCT 60 NA Rattus norvegicus 81 Dusp23 ENSRNOG00000022143 ENSRNOT00000030449 3 1 1 69 13 91019616 91019634 TTTGTGAAGATCGTGGACG 58 91018825 91018843 CAAAGCCTAGAGCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 2 1 1 87 7 98816560 98816579 TGAGAAAGCAGTGTATCCTG 57 98816629 98819205 CTGTTTAACCTCCCGATCC 58 NA Rattus norvegicus 81 Slc4a2 ENSRNOG00000014347 ENSRNOT00000019666 3 1 1 80 4 7270579 7270710 ATGTCTGACAAGCAATTCCA 58 7270518 7270537 CAGGAAGGCATTGATAGCAG 59 NA Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 3 1 1 70 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036610 10036628 CCGTGGACTTTGAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mthfr ENSRNOG00000008553 ENSRNOT00000011384 1 1 1 80 5 164853703 164856612 CTATCCAGGGCTACACCTC 59 164856655 164856674 CGATCACATCCTTGATCGTC 59 NA Rattus norvegicus 81 Mir3579 ENSRNOG00000035473 ENSRNOT00000053596 1 1 1 60 6 133860546 133860570 CTTTGATAATGAGAAGATGTGGACC 60 133860510 133860530 ATAGAACATGCGCTACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr395 ENSRNOG00000048909 ENSRNOT00000045037 2 1 1 60 3 15689014 15689035 CTATGTCTGAGTTCATCCTCCT 59 15689053 15689074 GAGTACATGCCTTGTTCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2e1 ENSRNOG00000026008 ENSRNOT00000042864 1 1 1 80 11 66083157 66083176 CTTCAAATGTCCTGTCTGCT 58 66083219 66096175 CGGAAAGTTCCTGTCATGG 59 NA Rattus norvegicus 81 Polr3e ENSRNOG00000016960 ENSRNOT00000040963 3 1 1 80 1 190872528 190872547 TCCTAAGGATTCTTCCAGCC 59 190872587 190873825 AACTTCCACATGACAAAGTCTC 59 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489,ENSRNOT00000055540 3 2 2 80 4 176841435 176842562 ATCATCGACCAACATATCCC 57 176841374 176841392 GATCATCCCAATAGCCGAC 58 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 2 1 1 80 10 39336805 39336826 CCACAATAACGATGATGTCTGG 60 39335137 39335166 CGTGATTAGGAACATTAGACAGAG 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 2 2 2 80 8 48725160 48726452 CTCTATGTTCCACTCGCTC 58 48725098 48725116 GTTTCCAGCATCTCAATGC 57 NA Rattus norvegicus 81 Cdc42ep4 ENSRNOG00000028946 ENSRNOT00000048264 3 1 1 60 10 102246935 102246953 TCAATGAGAAGGAAGCCAC 58 102246893 102246911 CTGGATGACAAGCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 1 1 2 80 13 90521523 90522246 CTTATGCAGCAGTTACAGGAC 59 90527711 90527729 CAAAGACCCTGAAGGTCCA 59 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 1 2 2 80 2 178594131 178597008 GCCAGCCAGTATGATTTAGAC 59 178594071 178594090 GTAGGCCACAAAGTAGACTG 58 NA Rattus norvegicus 81 Fhl5 ENSRNOG00000007680 ENSRNOT00000046595 2 1 1 95 5 39571659 39574805 CTGTAAGAAGGTGATAACTTCTGG 59 39571587 39571605 TAAAGCTCTTTCCTGCAGC 58 NA Rattus norvegicus 81 Mageb4 ENSRNOG00000022806 ENSRNOT00000004132 3 1 1 135 X 61104504 61104641 ACGGGAAACCTGATTCCTG 60 61104387 61104405 CTGAACTTCTGGGACCTCC 59 NA InUTR Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 3 1 1 80 X 54294640 54294658 GACCCAATGGTACTTGAGG 58 54294702 54295349 CAATCCATTGGCTACAGGG 58 NA Rattus norvegicus 81 Bola1 ENSRNOG00000021185 ENSRNOT00000028767 2 1 1 164 2 198338788 198339079 GTACAAAGCGGATGCTAAGTG 60 198338644 198338662 GCAGTTCCAGTACCTCAGG 60 NA InUTR Rattus norvegicus 81 Echs1 ENSRNOG00000018522 ENSRNOT00000025446 1 1 1 80 1 212575547 212576177 CAATGGCTATGCTCTTGGTG 59 212575486 212575504 CCAAACTGGGCTTTCTCAC 59 NA Rattus norvegicus 81 Rn60_X_0588.2 ENSRNOG00000051220 ENSRNOT00000076131 2 1 1 124 X 57992125 57992143 ATTCCATTACAAGGTGCGG 58 57992009 57992028 CTCTGTCCTCATCTAGACCT 57 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000079794 1 1 10 62 18 30020243 30020261 AGTGTTCCTCCTGGTTTGG 60 30020284 30185398 GGGATTCTCAAAGATTTCTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000079794 2 1 10 137 18 30020168 30020186 TACTCTCAGCAAAGGAGGC 59 30020284 30185398 GGGATTCTCAAAGATTTCTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Lonp1 ENSRNOG00000046502 ENSRNOT00000074253 3 1 1 80 9 10436519 10437263 TCTGAATTCAATGTCACTCGC 59 10437303 10437323 GTCTAAGTTCTCATCGCTCTG 58 NA Rattus norvegicus 81 Rgl2 ENSRNOG00000000474 ENSRNOT00000000554 1 1 1 82 20 5460837 5460856 CTATGACCTCCGACCTAACC 59 5460663 5460792 ATACACGGTGACTCTGAGC 59 NA Rattus norvegicus 81 Zfp553 ENSRNOG00000017837 ENSRNOT00000023995 3 1 1 60 1 198682757 198682776 CTACAAGTGTGGTGTCTGTG 59 198682798 198682817 TTGATGTTTGATTCGGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683,ENSRNOT00000064715 3 2 2 80 2 188527629 188527647 TGGAGCTATTCTGCTGGTC 59 188526666 188527586 ATCTGGTATAGGTCAGCACG 59 NA Rattus norvegicus 81 Gcat ENSRNOG00000055408 ENSRNOT00000078383 3 1 1 82 7 120267328 120267346 TTGCTGCTCAATATGGTGC 59 120267392 120267501 ATCTGTGCCTCTTCCAGTG 59 NA Rattus norvegicus 81 Cln3 ENSRNOG00000019103 ENSRNOT00000025898 3 1 1 80 1 197997187 197997362 AGGATTCTGAGAGGGAGGA 59 197997125 197997143 CCGCATTCTTCCAAAGGAC 59 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000023477 1 1 2 80 1 211255808 211255827 CCAGACACCACAAGATACCA 60 211251539 211255765 TCTTCCTCAGACAGAGTGC 59 NA Rattus norvegicus 81 Necab1 ENSRNOG00000007256 ENSRNOT00000009718 3 1 1 80 5 28707528 28707546 AGATGGAGTTCTCAGTGGA 57 28658862 28707485 TCTGTGTCAAGATTGTTGGT 57 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 1 3 4 80 3 62902414 62902432 TCGGATGGTTCTCTACCAC 59 62886677 62902370 AACCCAGCAGTAGTTAGCA 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 3 3 4 80 3 62902463 62902964 ATCGACTATGAGACCCTGTG 59 62902402 62902422 ATGTCTCCAGTTGTGGTAGAG 59 NA Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 3 1 1 62 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569339 90569361 TAGGGAGTTATCGCTAAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nox3 ENSRNOG00000016490 ENSRNOT00000022148 3 1 1 80 1 44566878 44570254 GGATGAATACCAGGCAATTCAC 60 44566819 44566839 AAGGTCTTCTGCTTTAAGCCT 60 NA Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 1 1 1 80 18 48300206 48346221 AAACCTATTTACAGGCCGTC 58 48346262 48346282 GCAAGTGTCTTACATTGAGGA 58 NA Rattus norvegicus 81 Serpinb1a ENSRNOG00000016581 ENSRNOT00000059854 3 1 1 84 17 32905859 32905877 TGGAGCATCTCACACTCTG 59 32905922 32906935 AGTTGAAGTCAAGAACTCAGGA 59 NA Rattus norvegicus 81 Rptn ENSRNOG00000018679 ENSRNOT00000025249 2 1 1 81 2 193724371 193725096 GGAGACATCCTTCGGAGAC 59 193725137 193725159 CATATCCATTTCTATCTCGGTCC 58 NA Rattus norvegicus 81 RGD1563962 ENSRNOG00000045814 ENSRNOT00000073716 2 1 1 135 2 165805259 165805277 AGAACGAGCTAGTGTCAGC 60 165815083 165815101 GGCTTCTTCCTCATGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Papl ENSRNOG00000047901 ENSRNOT00000071691 1 1 1 80 1 85145917 85145936 TTCTCCACTATGGTCGTCAC 59 85145976 85146072 CCCGATTCTTATTGGCTTTCTG 60 NA Rattus norvegicus 81 Erlec1 ENSRNOG00000007283 ENSRNOT00000050321 2 1 1 80 14 115337196 115338647 GAGAAGTCAAATGAGATTCCCAC 60 115337138 115337157 TGTACCATTTCCCATTCCCA 59 NA Rattus norvegicus 81 Fbxw9 ENSRNOG00000004212 ENSRNOT00000005581 2 1 1 80 19 26174187 26174205 GTGATCGAGTCACCTGGAG 60 26174245 26175845 AGTCAAAGTTCTCCTCTTCTACC 60 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000054017 ENSRNOT00000080490 3 1 1 141 17 44522346 44522364 TTCCTGGAGAACGTGATCC 59 44522467 44525635 TTCACTTTGTTTCTTAGCCGC 60 NA InUTR Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435,ENSRNOT00000066430 3 2 2 82 10 15656870 15656889 CCGTCATCATCTATCCACTG 58 15656933 15657320 AGCTAGTGGAGAGTACAGAC 58 NA Rattus norvegicus 81 Olr315 ENSRNOG00000045841 ENSRNOT00000045652 2 1 1 60 1 213452482 213452500 TGTGTTCTGTGCCTATGTC 58 213452522 213452542 GGAAACTTTGCTTCTTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpatch4 ENSRNOG00000018969 ENSRNOT00000056923 3 1 1 80 2 187420052 187422126 ATCAGAAGTTTGTGAAGACAGC 59 187422167 187422185 CAACATCACTGCAGCTCTC 59 NA Rattus norvegicus 81 Nfs1 ENSRNOG00000045686 ENSRNOT00000072945 2 1 1 80 3 151670270 151670935 AACAAGAGATGGAGTACGACC 60 151670210 151670234 CTGGAAGGTTCTTCATTATCTTCTG 60 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 1 1 1 97 8 118891401 118892279 GTGTATTCAGATACAGCCCTG 58 118891324 118891343 AATAGGGAGGAGGTATTGGG 58 NA Rattus norvegicus 81 Rn60_X_0639.3 ENSRNOG00000051322 ENSRNOT00000076936 1 1 1 60 X 63824567 63824585 TACCCATTCTCTTCCACGA 58 63824609 63824627 AGGCTACATCTGAATGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000012079 ENSRNOT00000016117 1 1 1 60 8 42779647 42779668 ATCTATGTGTTGACAGTAGTGG 58 42779689 42779707 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slpil2 ENSRNOG00000029508 ENSRNOT00000043470 2 1 1 106 3 160738179 160738197 AGAGTGCAGTACTGACTGG 59 160737610 160738109 TCTTCTTCACTGGTCTGGG 59 NA Rattus norvegicus 81 Tmem247 ENSRNOG00000046926 ENSRNOT00000074516 1 1 1 80 6 10483533 10484147 CTTCTTTGGATGCAGAACCC 59 10484190 10484208 CTGGGCAATCTCTGTCCTC 60 NA Rattus norvegicus 81 Tmem247 ENSRNOG00000046926 ENSRNOT00000074516 3 1 1 81 6 10483532 10484146 GCTTCTTTGGATGCAGAACC 60 10484190 10484208 CTGGGCAATCTCTGTCCTC 60 NA Rattus norvegicus 81 Fgf17 ENSRNOG00000012912 ENSRNOT00000017723 2 1 1 146 15 52331882 52332076 CCTAACCTTACCCTGTGCT 59 52328873 52328891 CTGGTACTCACGGATTTGC 59 NA Rattus norvegicus 81 Vwa9 ENSRNOG00000012469 ENSRNOT00000016798 2 1 1 80 8 70460634 70463112 TAGCACTCAACAAAGAAGGT 57 70463152 70463173 CAATCTGATTGGCTGAATTCTC 58 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000076614,ENSRNOT00000076797,ENSRNOT00000010065 2 3 4 117 7 116747595 116747613 ATGACTCGAGGAGAGGGAG 60 116747778 116747796 TGTAGTCACCCTCCTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Retnlg ENSRNOG00000001943 ENSRNOT00000002673 2 1 1 80 11 54514358 54514381 GTGAATACTGATGGAACCTTAGAG 59 54513847 54514319 GGAGGGACAGTTATCTCGA 58 NA Rattus norvegicus 81 Rcn1 ENSRNOG00000013452 ENSRNOT00000018074 3 1 1 87 3 95413251 95414170 TACTACCTGGGAAACCCTG 58 95413182 95413200 TAAACCTCCTCTCATCCCG 58 NA Rattus norvegicus 81 Nlrc4 ENSRNOG00000005810 ENSRNOT00000007655 3 1 1 87 6 22184310 22186911 CTCTACAGGGACTGATCGG 59 22186962 22186980 AGACTGATGTACGCATCCC 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 3 2 2 80 14 108446304 108446853 GACTGCCATTTCCTAGGTG 58 108448409 108448428 GGCCATTCTGGTGAATACTG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619,ENSRNOT00000084207,ENSRNOT00000055473 1 3 3 80 4 181145156 181145582 CACAAAGCAGTTCTGCAGAG 60 181145625 181145643 AGTCACAAAGGAGCCATCC 60 NA Rattus norvegicus 81 AABR07007130.1 ENSRNOG00000032668 ENSRNOT00000047883 1 1 1 60 1 282492408 282492426 AAGCCCTATGAATGCAACC 58 282492366 282492385 GCCTTTGAAGATTACTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 2 2 2 80 8 111564425 111564444 CACATTCCTCAACAAGTTCC 57 111564486 111565552 AGATTTACAGCACCGATGAG 58 NA Rattus norvegicus 81 Noto ENSRNOG00000037863 ENSRNOT00000057516 1 1 1 81 4 117206723 117207721 CAGACTCACAGGGTCAGAG 59 117207765 117207784 GGTATTGTGGTCCTGAAGGT 60 NA Rattus norvegicus 81 AABR07044581.1 ENSRNOG00000030677 ENSRNOT00000046763 2 1 1 80 20 11498050 11498069 ATGGCTTCAGGATTTCTGTC 58 11497972 11498009 CATTGATGAAGAGGTCCATGG 59 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 3 2 2 80 14 6674564 6675266 TCTGATGAACAGTATCCCGA 58 6674503 6674521 CTTGATAGCCTCATCGGAC 58 NA Rattus norvegicus 81 AABR07052585.2 ENSRNOG00000023227 ENSRNOT00000068494 3 1 1 80 3 63567674 63567694 CGGAAAGTACACAGTTAAGGC 59 63567104 63567632 TCCACTAGAGGAAGCACTG 58 NA Rattus norvegicus 81 Cyp4f40 ENSRNOG00000043344 ENSRNOT00000066654 2 1 1 80 7 14873451 14873469 ATCAGCCTCATGACCTTGG 60 14873513 14874601 GTACTCACTGGGCTTCTCC 60 NA Rattus norvegicus 81 Mir425 ENSRNOG00000035484 ENSRNOT00000053607 3 1 1 61 8 117354825 117354846 CTTTGGAATGACACGATCACTC 60 117354868 117354886 CACGATATTCCCGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039435.1 ENSRNOG00000046897 ENSRNOT00000045534 1 1 1 80 X 76696295 76697038 CATCGAGATCAAAGAGGAAACC 59 76696236 76696255 TTACATTCTCATCCGTGGGT 59 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312,ENSRNOT00000081934 3 2 2 80 3 111422566 111422584 TCCTTCAAGTACAGCGACC 59 111422626 111427218 TCTTAACAACTTGTCTGCCCT 60 NA Rattus norvegicus 81 Lfng ENSRNOG00000001250 ENSRNOT00000001682 1 1 1 80 12 16125776 16125794 CCACCAGAAAGTTTCACCG 59 16121726 16125735 AGATGAATGTCATCTCCTTGTG 58 NA Rattus norvegicus 81 Zbtb9 ENSRNOG00000026799 ENSRNOT00000000574 3 1 1 90 20 5566663 5566897 AAGGTGTGACCCTAGTCTC 58 5566951 5566969 CAAAGGAGTCGAAGCATCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tra2a ENSRNOG00000009156 ENSRNOT00000012325 3 1 1 80 4 78910087 78910106 TATGATCAGCGAACTGGGAG 59 78908397 78910046 TTCCATAGCCTCCTTAGAGTC 59 NA Rattus norvegicus 81 Ccdc65 ENSRNOG00000058916 ENSRNOT00000090760 1 1 1 80 7 140395148 140395168 GAACTTAGTCAAACTCACCCT 58 140395209 140396436 AGGATCTTCTCACCCTTCTC 58 NA Rattus norvegicus 81 Nxf1 ENSRNOG00000019069 ENSRNOT00000026033 2 1 1 80 1 224964181 224964201 GTTGTTCTAAACCGTAGAGGC 59 224964240 224964367 GTTCAAAGACAATAGCTCAGGA 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 2 2 2 80 10 83290706 83293636 CTGAAATGGTGTTTGCGAG 58 83293680 83293698 GACCAACAACAGGTAGAGC 58 NA Rattus norvegicus 81 Cpb2 ENSRNOG00000010935 ENSRNOT00000014909 2 1 1 80 15 57312698 57314247 AACTTACGAGGTTGTTCTCTG 58 57314288 57314307 GCATTCACAAAGAAGTGGAC 58 NA Rattus norvegicus 81 G2e3 ENSRNOG00000004232 ENSRNOT00000005670 2 1 1 80 6 72119222 72119242 TCACAATCCACAAGTTACCAG 58 72119282 72119503 CAGACTTTCCATCCTCTACAG 58 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 1 2 2 80 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 1 1 1 80 10 56488061 56488079 TATTGGCAATGGCTTCGGA 60 56487788 56487921 TAGGAACAACGGGCATACAG 60 NA Rattus norvegicus 81 Defb20 ENSRNOG00000023384 ENSRNOT00000031922 1 1 1 80 3 147952919 147955270 TACTTGCAGACAGTGTGCA 60 147955314 147955332 TCTCCACTAGTCTGCATCG 59 NA Rattus norvegicus 81 Lin7b ENSRNOG00000020746 ENSRNOT00000028164 2 1 1 86 1 101358878 101359548 GTGAATGGTGTGAGTGTGG 59 101358810 101358828 CACCACCAGTTTCACTGAG 58 NA Rattus norvegicus 81 Sfxn3 ENSRNOG00000015442 ENSRNOT00000021171 1 1 1 80 1 264799055 264799073 CTTGATTGGTCGCATGTCG 60 264799115 264799431 GGAGTCTTCCTGTAGAAGGTG 60 NA Rattus norvegicus 81 AABR07038567.1 ENSRNOG00000047748 ENSRNOT00000075300 1 1 1 97 X 55332598 55332616 TCTGGAGCAGAAGATTCCA 58 55332677 55332696 ATTGAGTCCTGGATTTCCTG 57 NA DesignNoJunction Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076397 3 1 5 107 7 120763793 120764149 CTCTTCCAGAGGTCCTGAG 59 120763704 120763723 CACTGAAGCTGTCTTCAGAC 59 NA InUTR Rattus norvegicus 81 Tmco5a ENSRNOG00000005100 ENSRNOT00000006809 1 1 1 80 3 108546570 108546590 AGAATAGATGAAGCCAACCAG 58 108546632 108547073 GATCTCATGTTCCAGCCTC 58 NA Rattus norvegicus 81 Fam117a ENSRNOG00000004417 ENSRNOT00000005939 2 1 1 80 10 83192361 83192379 CTAGAAGGGCTCAACCAGG 60 83192421 83194059 AACCTCAAGTATCCTCAGCAG 60 NA Rattus norvegicus 81 Slc16a5 ENSRNOG00000023476 ENSRNOT00000032016 1 1 1 113 10 104024144 104030738 AGGACTTATCACAGGCCTG 59 104030815 104030833 ATTCCTATGGAGGCCAGTG 59 NA Rattus norvegicus 81 Il22ra1 ENSRNOG00000027976 ENSRNOT00000031512 3 1 1 81 5 154082895 154083717 CAGTGTGGAATATAAGAAGTACGG 59 154083757 154083775 GTTGCAGAACTTCTGGGTG 59 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 1 1 1 62 20 7217528 7219153 CAAAGGTCCAGAGGGTGAG 60 7217484 7217502 TAGGTGTCTCTGTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Mettl22 ENSRNOG00000002714 ENSRNOT00000003700 2 1 1 83 10 7237363 7237381 AGATGTCCACCTGTACACC 59 7234458 7237316 AACTGGGACAGGAAGACTG 59 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 3 2 2 80 5 76678301 76678319 CTGGCTCAAAGAACTTCCA 58 76675409 76678258 CCATTGTAACAGAAGGAGGA 57 NA Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 1 1 1 98 1 264893924 264896004 AAGGACAGGTTCACAGGTC 59 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC294154 ENSRNOG00000038883 ENSRNOT00000059426 2 1 1 80 20 7347021 7363747 CTATGGAGATGTCATCTGGGT 59 7346961 7346979 TCAAAGGATGACAGCTGCT 59 NA Rattus norvegicus 81 LOC100910438 ENSRNOG00000016622 ENSRNOT00000022525 3 1 1 80 X 82408675 82408695 CAATTGAAACAGACTCTGGCT 59 82408108 82408635 ACTCAATGACCTGTTGAACAC 59 NA Rattus norvegicus 81 Brwd3 ENSRNOG00000002291 ENSRNOT00000050336 3 1 1 80 X 79835566 79835585 TGAGCCTCATTTATGAACGG 58 79834541 79835523 GTTGTTGAGCTACTGGGTG 59 NA Rattus norvegicus 81 Ankrd61 ENSRNOG00000001048 ENSRNOT00000001382 1 1 1 114 12 12756634 12756653 GAAGACTGCGACACAATCAG 59 12756730 12757856 AGATAGGCTGTGTCTGCTG 59 NA Rattus norvegicus 81 Adora2a ENSRNOG00000001302 ENSRNOT00000001759 1 1 1 121 20 14266977 14273835 TTCCACTCCGGTACAATGG 59 14266874 14266892 CTGACTGCAGTTGTTCCAG 59 NA Rattus norvegicus 81 Fhl3 ENSRNOG00000007541 ENSRNOT00000010007 3 1 1 111 5 142693701 142693720 ATACATCCAGACAGACAGCG 60 142693792 142693908 AAACAGTTCCCTTGAATCGTG 59 NA Rattus norvegicus 81 Mmd2 ENSRNOG00000001113 ENSRNOT00000060608 3 1 1 81 12 14062218 14063837 CTTCCATGAACGGTACAAGC 59 14063881 14063899 CATGGAGAGGATGACCAGG 59 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 3 1 2 80 2 164627248 164627269 TAAAGTCCACTTTGACACAGAG 58 164627308 164628461 ATTCTCTGAGCATAGATCTCAGG 59 NA Rattus norvegicus 81 LOC500124 ENSRNOG00000010594 ENSRNOT00000014331 3 1 1 81 4 80357078 80358967 CGACTCTTTGTTACCCAAACC 60 80354370 80354393 CGTATGATAGGGATGTTCAATTGG 60 NA Rattus norvegicus 81 Dhx57 ENSRNOG00000054272 ENSRNOT00000090688 2 1 1 80 6 2953549 2956103 CCAGATGAAACAGGCTTCC 59 2953487 2953507 GTTTCTCTTTCTTCCCAAGCA 59 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 3 2 2 80 17 29646264 29646283 GTCTGTGTACAATCACAGGT 58 29646323 29647504 GTTCATCAAAGTAGTGACACAG 57 NA Rattus norvegicus 81 Prss3 ENSRNOG00000013382 ENSRNOT00000018042 3 1 1 80 4 69266233 69267283 CTACAAATCCCGAATTCAGGT 58 69266173 69266191 GCTGCATCAATGAATTGCT 57 NA Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000083788 3 1 2 102 1 88361689 88361707 TTGCTTGTCTGAAACCCAG 58 88353112 88361623 TCTGGACTCCAGATCTGAG 58 NA InUTR Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000034372,ENSRNOT00000081061 1 3 4 80 X 53493249 53504941 CAAACTTCAGAATCTATGGGTGAG 60 53504977 53504998 CTCCATCACTTCTTCTAACCCT 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000058357 2 1 4 80 X 53054457 53054476 CTGTTACAAAGACGTCTGGA 58 53054517 53062535 CAAATGGGACCGAATATTGAG 57 NA Rattus norvegicus 81 RGD1561276 ENSRNOG00000047700 ENSRNOT00000041791 2 1 1 60 3 102664636 102664658 CTGCTTTACACAGATATTCCTCC 59 102664675 102664696 TACAAGGGTTACCATCTCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp711 ENSRNOG00000022391 ENSRNOT00000046364 3 1 1 80 X 84089418 84089437 TTGAGATTCAGCTTGAGGAC 58 84089477 84090249 CTCGTCTTTCATCATATGATGC 58 NA Rattus norvegicus 81 Chac1 ENSRNOG00000014387 ENSRNOT00000019392 3 1 1 81 3 111161533 111162314 CTTGAAGATCATGAGGGCTG 59 111162358 111162376 TCAGGTACTTCAGTGCCTC 59 NA Rattus norvegicus 81 Gpalpp1 ENSRNOG00000001037 ENSRNOT00000001371 1 1 1 80 15 58162572 58164843 TTCTTCAACTCAGAGGAAGC 58 58162511 58162530 ATAGTCAACTGGTCCTTTCG 57 NA Rattus norvegicus 81 RGD1304728 ENSRNOG00000014027 ENSRNOT00000018808 3 1 1 80 10 58733667 58739767 CACGAAGAAAGAAATGACCAG 58 58733607 58733627 TGTCTTGGTGATCTTGATTGG 58 NA Rattus norvegicus 81 AABR07027457.1 ENSRNOG00000048067 ENSRNOT00000074220 2 1 1 80 17 31916118 31916515 GATTCCTGCTTCCAGAGGT 59 31916056 31916076 ATAGAGACTTGACCTCCAAGG 59 NA Rattus norvegicus 81 Matn3 ENSRNOG00000056141 ENSRNOT00000084212 1 1 1 80 6 34079578 34082500 GTGTTCAGCCATTGATAAGTG 58 34082542 34082562 TGGTAAGAACCATTTCTGTCG 58 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000084451,ENSRNOT00000091794 2 2 3 60 14 60057921 60057939 AGTGCTTCCCTTAACTCCC 59 60057879 60057902 CACAAGGTACTTCTTAATGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r27 ENSRNOG00000036690 ENSRNOT00000054959 2 1 1 93 10 109728548 109728566 ATGGTGCTGACATTCACCA 60 109728193 109728494 ATGAGATACCTGGCTATGTCAG 59 NA Rattus norvegicus 81 Stk17b ENSRNOG00000012502 ENSRNOT00000016856 2 1 1 82 9 60416172 60420826 CGAAAGAACTTGGGAGAGGA 60 60416109 60416129 GAATTTGGCAGCATACTCCTG 60 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 3 3 3 133 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518939 150518958 CAGTCATAGCTTTCATGCCG 60 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 1 2 2 80 11 64837652 64837671 GTTCAAAGGTACGAAGGAGG 58 64834628 64837609 GGTAGGGAAGTCAGCTCTG 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 1 1 2 104 2 235312003 235321204 GTACAAGTGTAGCGACGGA 60 235321270 235322661 CCAATGTTCAGATGAACACCA 59 NA Rattus norvegicus 81 Colgalt1 ENSRNOG00000023317 ENSRNOT00000024866 2 1 1 80 16 20041894 20045043 ACATTCTGTTTGTGGACAGC 59 20045086 20045104 CCACTGTCTTGTTCTCAGC 59 NA Rattus norvegicus 81 Plcb3 ENSRNOG00000021150 ENSRNOT00000028720 2 1 1 80 1 222220842 222220860 CTTGGAAATCTTCGAGCGG 59 222220248 222220799 TTAGCACCTATCTCCAGCAG 59 NA Rattus norvegicus 81 Lvrn ENSRNOG00000003950 ENSRNOT00000039733 1 1 1 80 18 40941372 40948702 CAGAGACTGCAATACCTCCT 59 40948744 40948763 AGTCCCAGTCCTTATTGCTC 59 NA Rattus norvegicus 81 Rn60_6_1120.1 ENSRNOG00000000345 ENSRNOT00000000387 3 1 1 60 6 103808614 103808632 TACTCCAGAGATGTCCTCC 57 103808572 103808591 CTACCAAGTTGAGAACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 2 1 1 80 20 13415255 13416525 CCAGGACTGAAGAAGACCA 59 13415193 13415211 CTCTTTGCAAACCACAGCA 59 NA Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 3 1 1 81 20 13442933 13442953 TGATTTACACTGACACCCTCC 60 13440753 13442890 CCGACTTCAACAAATGCGT 60 NA Rattus norvegicus 81 Zgrf1 ENSRNOG00000036980 ENSRNOT00000014695 1 1 1 80 2 231923058 231925622 CCTGTTAGCAATGTCTCAGTC 59 231925664 231925682 CTTGTAATGGCTGGTGGGA 60 NA Rattus norvegicus 81 Gml ENSRNOG00000025641 ENSRNOT00000035496 3 1 1 80 7 116056277 116058785 ATCGCTATACGTGTGACCA 59 116056215 116056236 ATGCTGTTTGTACACAAAGGAG 60 NA Rattus norvegicus 81 Nr2f6 ENSRNOG00000016892 ENSRNOT00000022898 2 1 1 70 16 19776953 19776971 AAGAGTTTCTTCAAGCGCA 58 19774404 19774422 ATCTGACAGTCACGGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Pth2r ENSRNOG00000015259 ENSRNOT00000021099 3 1 1 80 9 72153330 72155189 TCCTTCCAGGGATTCTTCG 59 72157273 72157291 AGTCCAGGTCTTCTTCACC 59 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975,ENSRNOT00000014078 1 2 2 60 14 75881109 75881129 CAGAAAGTCGAAAGGTTCCTC 59 75881149 75881169 TAAAGTAGAAGTTCGAGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb41 ENSRNOG00000038760 ENSRNOT00000059213 1 1 1 80 15 46179832 46182132 ATGATGCCGAGAGGAAAGG 60 46182175 46182194 CGATACGTCTTTGCATACCC 59 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308,ENSRNOT00000091545 3 3 3 80 2 113747183 113747204 AGCAACTGGAAGATTACTTGAC 59 113747244 113756629 CATCAAGGAACTCTGTCGTG 59 NA Rattus norvegicus 81 Wdr64 ENSRNOG00000038083 ENSRNOT00000065706 1 1 1 80 13 93850830 93851998 GAATGTGTAAGGAGATCAAGTCAG 59 93852037 93852055 CTTGCTACTCTGTGGACCC 60 NA Rattus norvegicus 81 Olr1319 ENSRNOG00000053365 ENSRNOT00000083262 3 1 1 60 8 43607369 43607387 GAGAGCAGATTCAAAGCCT 58 43607410 43607429 AGAAGACAGCCACAGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cul3 ENSRNOG00000015633 ENSRNOT00000021528 3 1 1 80 9 86069108 86069684 AGTTGTAGACAGAGGAGCA 58 86069046 86069066 TCCTCATAGACTGATCTTCCT 57 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 2 1 1 60 10 104036918 104036937 GGACTTATTCCTCGATTCGC 59 104036958 104051004 CCCAATAGCAAACTTGATGAG 57 NA DesignNoJunction Rattus norvegicus 81 Olr1325 ENSRNOG00000061476 ENSRNOT00000084016 3 1 1 60 8 43722595 43722613 ATGTTGCCATCTGTAACCC 58 43722635 43722655 CAGAAGCAGAGATGATGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629,ENSRNOT00000081715 3 2 2 80 20 8291543 8291562 TGATTTCTCGAAACCACTGC 59 8291601 8296489 CACCATTCAGACTCTTATTGTCC 59 NA Rattus norvegicus 81 Hnrnpul2 ENSRNOG00000019507 ENSRNOT00000026416 3 1 1 80 1 225019653 225020185 TGAGGCCAAGGTAACTCAG 59 225020228 225020247 TCAATAGACCACCCAACTCG 60 NA Rattus norvegicus 81 LOC100125384 ENSRNOG00000045720 ENSRNOT00000074027 3 1 1 60 1 106405980 106406000 CACAGAAATATTGCCAACCCT 59 106406021 106406040 GGTAGTCCAGCATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp13 ENSRNOG00000030639 ENSRNOT00000048030 1 1 1 80 2 119264205 119264227 GAAACCTCCCAAGGATATTTGAC 60 119264264 119264997 CATGTCCCAACTTAGTCATCTG 59 NA Rattus norvegicus 81 Flrt3 ENSRNOG00000004874 ENSRNOT00000006454 2 1 1 83 3 134685277 134685296 GAGAGCAAGAGAAAGAACCT 57 134684606 134685231 ACTTCAATATCAGGGCCAC 57 NA Rattus norvegicus 81 Phf23 ENSRNOG00000017657 ENSRNOT00000024079 1 1 1 80 10 56608309 56608327 CAAGATGGAGATGGCAGCT 60 56608368 56608497 TGAGTCATCACCTGATTCTACC 59 NA Rattus norvegicus 81 Slc25a31 ENSRNOG00000038398 ENSRNOT00000058476 2 1 1 80 2 127550467 127551377 ACACTGTTAAGGGCTTATTGC 59 127551419 127551437 CAGTCGTCACGATTTGAGC 59 NA Rattus norvegicus 81 Grwd1 ENSRNOG00000021058 ENSRNOT00000056181 2 1 1 87 1 101818167 101818185 AAGAGGATGAAGAGGAGCG 59 101816045 101818116 AGCCAAGATACCCGAACTC 59 NA Rattus norvegicus 81 Dhh ENSRNOG00000053675 ENSRNOT00000087327 2 1 1 103 7 140577249 140577268 TAAGTATGGTTTGTTGGCGC 59 140576898 140577185 ATGAGTTATCAGCTTTGACCG 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151,ENSRNOT00000034495 1 2 2 80 5 17650787 17650806 GTACCAGCAGAAAGTGTGAC 59 17649617 17650748 GACATACTTTCGAAGATCCTCTG 59 NA Rattus norvegicus 81 LOC689618 ENSRNOG00000028533 ENSRNOT00000029558 3 1 1 92 3 171603064 171603799 TACATCAAGATTCTCCCATCG 57 171603853 171603871 CTTCTCCAAGCAGTACAGG 58 NA Rattus norvegicus 81 Rn60_X_0649.2 ENSRNOG00000051212 ENSRNOT00000076836 2 1 1 60 X 63984129 63984148 AACTTTGAGCACTACTTCGG 58 63984088 63984107 GAGCATCACTCTTTAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 2 2 2 80 X 78773178 78773197 TGGATGCGTCAAATCATCTC 59 78773240 78774492 CTGCAGAATGATATGGCCC 59 NA Rattus norvegicus 81 Sidt1 ENSRNOG00000002013 ENSRNOT00000002759 3 1 1 80 11 61376066 61384004 TCCATCACATGAGGTTCCA 58 61388275 61388295 GTGAGACAGCCATATTTCCAG 59 NA Rattus norvegicus 81 Lrrc36 ENSRNOG00000016854 ENSRNOT00000022622 2 1 1 80 19 37407297 37409532 ATTGAAGCTCAGTTCAGATCTC 58 37409573 37409591 AGCTGTTGCTCTACATTGG 58 NA Rattus norvegicus 81 Mrpl34 ENSRNOG00000017552 ENSRNOT00000023579 2 1 1 108 16 19874113 19874295 TTGAGTGGCAGGTATCTCC 59 19874367 19874385 TCGGCTGATACTCGTTTCC 60 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 2 2 2 81 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477450 91477468 GTTTCTTTGCTCAGCTCCA 58 NA Rattus norvegicus 81 Plb1 ENSRNOG00000026037 ENSRNOT00000061176 1 1 1 80 6 25485711 25491640 CTAGAAACTCCTCCAGCCC 59 25485155 25485175 CACATTCTGTAGTTCGCTCTC 59 NA Rattus norvegicus 81 Mcidas ENSRNOG00000039588 ENSRNOT00000076278 1 1 1 80 2 44866348 44866828 CTCATTGCAGATTCGTCCTC 59 44866871 44866889 AGACGGAACATCACAAGGG 60 NA Rattus norvegicus 81 Mrpl38 ENSRNOG00000008256 ENSRNOT00000011328 3 1 1 88 10 104685181 104685199 ATTCCTTGTGGACACTGCT 59 104683315 104685015 GATGTTGGTTACCAGCCAG 59 NA Rattus norvegicus 81 Rn60_13_0803.2 ENSRNOG00000051246 ENSRNOT00000076447 2 1 1 60 13 75368045 75368064 CACCATCAACAAGAATGCTG 58 75368086 75368105 GTTCTTTCAGATCATGTGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyzl1 ENSRNOG00000016295 ENSRNOT00000021901 2 1 1 80 17 56255941 56256655 ATGAACTATTGGCAGGGCT 59 56255879 56255897 TCAGGAAACATCGCATCCT 59 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 1 2 2 80 1 101625880 101626066 GAAGAGCTGACGGTCTCAG 60 101626110 101626128 CAGAAGCATCGCTTTGGTC 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 3 2 2 84 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626073 CTAAGCTCTGAGACCGTCAG 60 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622 2 1 7 131 20 2515590 2515880 AACTTCCTTTACCAGGGACC 59 2517087 2517105 CAGGTCTGTACTGTCCAGC 60 NA Rattus norvegicus 81 RGD1561197 ENSRNOG00000033366 ENSRNOT00000040244 1 1 1 80 15 67092877 67092949 CAAGAGTCCAATGAGACCG 58 67092991 67093011 CTCTAAATCTCCAGAGGTGTG 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000035976,ENSRNOT00000036233,ENSRNOT00000073253 1 4 5 80 5 101801092 101855462 GGGAAGCTGTTAAGAGTCTC 58 101855504 101855523 GATGTCTATTGAGCTGACGT 58 NA Rattus norvegicus 81 Pou4f3 ENSRNOG00000018842 ENSRNOT00000025465 2 1 1 89 18 36713914 36713933 CTGCAAGAACCCAAATTCTC 57 36713985 36714324 TATATTACCCTGCAGCTGC 57 NA Rattus norvegicus 81 Bles03 ENSRNOG00000020551 ENSRNOT00000027869 2 1 1 126 1 220806793 220807469 GGATGGAACCAAATGAAGAGC 60 220807557 220807575 GCATCAAATACCAGCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam131c ENSRNOG00000023008 ENSRNOT00000037202 3 1 1 115 5 159929697 159929715 CTGAGCAGTTTGCCATCAC 60 159929792 159930313 GATACTCTCGAGGTCTTGGAG 59 NA Rattus norvegicus 81 AABR07066648.1 ENSRNOG00000047075 ENSRNOT00000073673 3 1 1 82 9 12115065 12115085 AGAAGTGTGACTTTGAGAGGG 60 12115129 12115864 GACATCCAGCCTGTAGTCC 60 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560,ENSRNOT00000058906 1 2 2 80 5 88573199 88573217 AAACGCAGAAATGGTCCAG 59 88569932 88573158 CCCATCACTGTCATAGTTATCC 58 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773,ENSRNOT00000010419 2 2 2 81 6 25099678 25100257 GAAGAGGATGCAGGATCAG 57 25100302 25100320 ATCAACCACTTCTAGCAGC 58 NA Rattus norvegicus 81 Gper1 ENSRNOG00000001287 ENSRNOT00000001732 3 1 1 60 12 17310856 17310876 CTACACCATCTTCCTCTTCCC 60 17310816 17310835 GTTCACCACCAAGATGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam220a ENSRNOG00000024605 ENSRNOT00000029692 3 1 1 145 12 13044629 13066938 GCCTGCAGGTTCATATTGAG 59 13044503 13044521 CCTTGTGACTGCTTCACAC 59 NA InUTR Rattus norvegicus 81 Rn60_X_0614.1 ENSRNOG00000029559 ENSRNOT00000049652 2 1 1 60 X 60761762 60761783 CAAGGGAAGGTAATCATTTGGT 59 60761804 60761822 CCTGGAAATGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0d1 ENSRNOG00000017235 ENSRNOT00000023606 1 1 1 80 19 37482592 37482706 TTACTACCCGGAATACAAACTG 58 37482533 37482551 TCAAAGAATCGGTCCTCCA 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 2 3 8 80 13 68709932 68710069 TACACTGCTCAGTTGAAAGC 59 68710112 68710130 TACTCGGTCCATCTTCAGC 59 NA Rattus norvegicus 81 Uckl1 ENSRNOG00000050277 ENSRNOT00000020695 3 1 1 80 3 177066391 177066410 CGTGTGAGAATCATCACCAC 59 177066253 177066348 ACCAAAGTTCCCAATGCCT 60 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233,ENSRNOT00000089126 1 2 2 80 8 65754099 65755965 CACAGCTTTCAGGATCTAGAG 58 65756005 65756025 GAGTATTCTTTGCTCTTGCTG 57 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233,ENSRNOT00000089126 2 2 2 80 8 65745245 65745362 GTGAATGCCAAAGATATAGACG 57 65745402 65745421 CAGCAACTGACAAATTGTCG 58 NA Rattus norvegicus 81 Doxl2 ENSRNOG00000032432 ENSRNOT00000043790 2 1 1 91 4 78621893 78621912 ATCTACAACCAGAATCACCC 57 78621966 78622234 GCTACCAAATCCTGATCGT 57 NA Rattus norvegicus 81 Gprasp1 ENSRNOG00000049985 ENSRNOT00000073661 3 1 1 80 X 106307714 106307732 ACAGGTCTGCTTTAAGGCT 59 106307775 106308483 ACCAACCTCCAAGATCTGAG 59 NA InUTR Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 1 2 2 80 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940085 112940104 GATCATCGTCCAGGAAACAG 59 NA Rattus norvegicus 81 Scgb1d2 ENSRNOG00000020294 ENSRNOT00000027492 3 1 1 89 1 225593149 225594888 GCTATGAAGCTAATGCTAGCC 59 225593080 225593100 CCTTCTTCAGTTCTTCCTCAC 58 NA Rattus norvegicus 81 Lrrc29 ENSRNOG00000025231 ENSRNOT00000059663 1 1 1 80 19 37268377 37269525 GCTCTTCACTGAAGGATGC 59 37268315 37268333 AGGAGGACAAGTCTAGCAC 58 NA Rattus norvegicus 81 Adamdec1 ENSRNOG00000030724 ENSRNOT00000028974 2 1 1 80 15 49495995 49496014 ACAGTGAGAAGCAAATTGGC 60 49495739 49495955 GAAGTGAGTTTACATTTGGGCT 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286,ENSRNOT00000066137 1 2 2 86 10 105757218 105771725 GGAGGCAGGATGAAGACTC 60 105752623 105752642 ACTTAAAGGAGAAGGCTGCT 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 2 3 3 84 13 50754129 50754148 AACAAGATCAGCAATGTGCC 60 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 1 2 2 110 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863377 102873766 CTTCTCATCCTGACGGTCC 60 NA Rattus norvegicus 81 Ccdc115 ENSRNOG00000013234 ENSRNOT00000082531 3 1 1 68 9 37775591 37775609 GTATGGAGCCTCAGGTCTG 59 37775771 37775790 TGATCACTCTGAAGGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 1 2 2 80 13 47908017 47914850 GGCTAAATATTACCACTGAGCC 59 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 3 2 2 83 13 47908018 47914853 GAAGGCTAAATATTACCACTGAGC 60 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Ell ENSRNOG00000019824 ENSRNOT00000026846 1 1 1 80 16 20606888 20613369 GAAGCCAAGGACACATCTC 58 20606826 20606848 CAATATTGGAGAGGTAGAAGGAG 58 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864 1 1 2 82 5 90349007 90349025 TCTAGGTTCCTTGTGGTGG 59 90349071 90351999 GAGACTGGAACTGACTCCA 58 NA Rattus norvegicus 81 Rasl12 ENSRNOG00000032339 ENSRNOT00000046914 3 1 1 99 8 70926288 70928272 CAGTACAGGCAAGTCACCA 60 70928335 70928353 GCACATGCTCAAAGTCCAG 60 NA Rattus norvegicus 81 Zfp113 ENSRNOG00000001341 ENSRNOT00000001815 3 1 1 80 12 19292376 19292394 TTTCCTGACAAGGACAGTC 57 19291848 19292332 AAATGTCACCAACTCCTGG 58 NA Rattus norvegicus 81 Pla2g4e ENSRNOG00000024904 ENSRNOT00000030502 2 1 1 80 3 111974666 111974685 CCTCTATGACCTCTCCAAGC 59 111973782 111974623 AGTTCTTCCATGCCCTCTG 59 NA Rattus norvegicus 81 Sectm1a ENSRNOG00000036672 ENSRNOT00000054931 1 1 1 80 10 110266583 110266603 ACAGAGGGATATACTTGTGGC 59 110265603 110266544 TTGAAGGCTCTGAAACATTCAG 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754,ENSRNOT00000080846 2 2 2 80 20 18921690 18921710 GAAACCATCAAGGAACTGAGG 59 18921751 18927695 CAATGAGGAGCCCTCATAGG 60 NA Rattus norvegicus 81 RGD1564129 ENSRNOG00000042120 ENSRNOT00000058966 1 1 1 84 17 56935948 56935966 CTGGATCTGCTGTTGAAGC 59 56936569 56937039 GGAAAGAACAGAGAACGCTC 59 NA Rattus norvegicus 81 Ccdc137 ENSRNOG00000048712 ENSRNOT00000072099 1 1 1 80 10 109632130 109633598 AAGAAAGCGTTCCAGAAGC 59 109633642 109633660 CTCTTGCTCCAATCTGTCC 58 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000025216 ENSRNOT00000051259 1 1 1 93 1 88770223 88770241 AAAGTGTCTGACCTCAGCC 60 88770298 88770530 CTTCATGAGGCATGATGCC 59 NA Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000082415 2 1 2 89 1 4535425 4535492 GGGACATCATTGGAAGAGGA 59 4529638 4529657 TCTGTTCCTTCAGGTTCTGG 59 NA Rattus norvegicus 81 Zdhhc15 ENSRNOG00000002751 ENSRNOT00000003714 2 1 1 80 X 75477248 75477996 ATTGCCCATGGGTTAATAACTG 59 75477189 75477208 AGTAGAGAACGGAATACGCT 58 NA Rattus norvegicus 81 Sgce ENSRNOG00000046905 ENSRNOT00000074177 1 1 1 80 4 29742326 29742347 TACTCGCTTATATCATGTGCTG 58 29740630 29741350 GATGGACAAGTTGGATATCTGG 59 NA Rattus norvegicus 81 AABR07054897.2 ENSRNOG00000048755 ENSRNOT00000072350 2 1 1 60 3 173265126 173265144 GAAGAGTGGGCATTGTTGG 59 173265084 173265103 TCTCCAGCATCACATCTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr210 ENSRNOG00000029365 ENSRNOT00000042820 1 1 1 60 1 170796295 170796315 GGAAGTGGATTCATCTTGGAG 59 170796336 170796355 CACAGAGCAATTCAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raet1c ENSRNOG00000040300 ENSRNOT00000062027 3 1 1 80 1 1103543 1103561 CAGATATCACCCAGCCTCC 59 1103480 1103501 AGATGATGGATGATGAGTCCA 59 NA Rattus norvegicus 81 RGD1559622 ENSRNOG00000025219 ENSRNOT00000035057 1 1 1 81 2 149720666 149722360 GGAATAGAATACAGACTTGCTCC 59 149720607 149720626 GGAGAAAGAACTTGGTTGCA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000079448 1 1 11 80 6 99062155 99062174 GAACTGCAAGCTTACACCAC 60 99062214 99063803 TTCTGTCATACTTCCCTGTGTC 60 NA Rattus norvegicus 81 LOC685406 ENSRNOG00000033407 ENSRNOT00000048225 2 1 1 107 4 82639922 82643833 CTTCAGAGACAGTGTACTCTG 58 82643902 82643920 ACTGTATGAAATGGTCCGC 58 NA Rattus norvegicus 81 Olr406 ENSRNOG00000046849 ENSRNOT00000072630 2 1 1 60 3 16183727 16183748 ATGAATGAGAACCTCTGTTTCC 59 16183766 16183787 AATTCGCAGTAGATAAGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424,ENSRNOT00000090009 1 2 2 80 15 84446916 84446937 CAAATGTGACCTTAGATAGCGT 59 84396792 84446877 ATGGATGGACCTCTTGTACTG 59 NA Rattus norvegicus 81 Ado ENSRNOG00000000639 ENSRNOT00000000791 1 1 1 80 20 22448227 22448247 AAGACCTTAACATCGCACC 58 22448290 22448309 AGATGTGCATGTAAGTGACC 58 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076372 2 1 5 122 2 30665212 30666572 GATGTCAGGTACACCAGGG 60 30667388 30667408 TCCATGATATCCGGTGATCAG 59 NA InUTR Rattus norvegicus 81 AC107531.3 ENSRNOG00000059786 ENSRNOT00000015108 3 1 1 80 1 168715712 168716026 CTGGCTCTTTAAGGGAGGG 60 168716070 168716088 TCCGGTCTGTTTCCTTCAG 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000081078 2 1 4 118 5 104581552 104594255 GTCATGTGGAGGAGGTGTC 60 104594337 104594355 AGGATTTCAGGAGCTGTGG 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000081078 3 1 4 121 5 104581552 104594255 GTCATGTGGAGGAGGTGTC 60 104594338 104594358 TACAGGATTTCAGGAGCTGTG 60 NA Rattus norvegicus 81 Tas2r145 ENSRNOG00000037036 ENSRNOT00000055734 3 1 1 60 4 167017878 167017899 ACTGGTAAACTACTCTGACTGG 59 167017918 167017938 CAGGATGAAGTTGATGAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pamr1 ENSRNOG00000005348 ENSRNOT00000064282 1 1 1 80 3 92443889 92450300 TAATTCACCCAGGTTGTACCA 59 92450342 92450360 AGAAGTCGTCCAGAGTTCC 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000052623 ENSRNOT00000047242 1 1 1 60 10 44156678 44156697 GTCATTTCAGGCTCCTACTC 58 44156637 44156655 CCTCTGGTGAGTTCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc13a ENSRNOG00000018452 ENSRNOT00000025162 1 1 1 80 16 20079135 20079309 TGGTACAATCTGGACAAGAG 57 20079074 20079092 CCCTTTGATCTCCACACTG 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 2 1 1 80 4 66308953 66308976 CAGTGATGATAGAGTATGCAAGAG 59 66309012 66322929 CCAAGATCCATTCTTGTTCCAG 59 NA Rattus norvegicus 81 Rn60_5_0814.17 ENSRNOG00000051345 ENSRNOT00000076612 2 1 1 60 5 77794969 77794989 AAATCTAGATGTGCTGCTGTG 59 77794929 77794949 TTCTCCTGTCTCAACTTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 1 2 2 80 4 78451463 78451482 AAGATTGTTGTGTCTGTGGC 59 78451046 78451422 TTCATCATTCAAGACCTGGGA 59 NA Rattus norvegicus 81 Ccdc183 ENSRNOG00000017044 ENSRNOT00000061874 2 1 1 80 3 2833049 2833654 GGACATGATAGAAACCTTCCA 58 2832989 2833008 TGGCCCTGTTTCTTTATCTC 58 NA Rattus norvegicus 81 Dip2c ENSRNOG00000015288 ENSRNOT00000020634 3 1 1 80 17 63746429 63746448 CAATGCAGATGACATTGTGG 58 63746490 63748708 GAGAACACAGCTATCCTTCC 58 NA Rattus norvegicus 81 LOC500035 ENSRNOG00000031207 ENSRNOT00000050722 3 1 1 84 4 40161344 40161363 TATCACTGCTGATGTTGGCT 60 40161409 40165800 TGTATTGGCATGAGTACCCA 59 NA Rattus norvegicus 81 Atp6v1b1 ENSRNOG00000013573 ENSRNOT00000018303 2 1 1 80 4 115432988 115433160 CACTATGCCTAATGACGATATTACC 59 115433196 115433216 CTGTCCACATAAATCTGTCCC 59 NA Rattus norvegicus 81 Timd2 ENSRNOG00000021345 ENSRNOT00000059468 3 1 1 80 10 31764991 31765014 GCCACTACATATTATCCAGATCAG 59 31762349 31764956 AGTGTTATTCCAGTCTGTAGGAG 59 NA Rattus norvegicus 81 RGD1304567 ENSRNOG00000025034 ENSRNOT00000032859 1 1 1 82 5 171245232 171245250 TGCTCTTCTACCAGCTTGG 59 171245296 171245945 TGTGATGAGGAAGCCAGAC 59 NA Rattus norvegicus 81 Lrrc8e ENSRNOG00000028460 ENSRNOT00000035142 1 1 1 105 12 2563474 2563492 TTCAAGGTGCTCAAACCCT 60 2560046 2563405 TCTTGTCCTGTGTCACCTG 59 NA Rattus norvegicus 81 AABR07012277.1 ENSRNOG00000037341 ENSRNOT00000056498 1 1 1 175 2 192148061 192148079 AAGTGTCCTGAGCCTTGTC 60 192148218 192148236 CAAGGTGGAGTTTGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm7sf3 ENSRNOG00000001817 ENSRNOT00000002486 1 1 1 80 4 180933353 180933372 GGTACTTGGAGACAGAAGAC 57 180931796 180933312 CAGGAATGGGATCTCTTTCTG 58 NA Rattus norvegicus 81 AABR07016950.1 ENSRNOG00000049843 ENSRNOT00000040447 2 1 1 81 15 5486391 5486574 GGAACAGACTTCTGTTTAGAAAGG 60 5486333 5486353 TTCTCCAAACGCTTCATTCTC 59 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000055872 1 1 2 86 10 34284414 34284433 TCAGTGTCAATGATGCTCTC 58 34284479 34284505 ATATAAGTCCCACTTTGGTCCT 59 NA InUTR Rattus norvegicus 81 Rn60_X_0648.1 ENSRNOG00000055020 ENSRNOT00000092230 1 1 1 60 X 64721434 64721454 GATCCAAAGGAACTAGAGCAG 58 64721474 64721494 TTGTTTCAAAGCTCAGACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekha4 ENSRNOG00000020942 ENSRNOT00000028423 3 1 1 80 1 101522454 101522473 GACACATTGGAAGACCTGAG 58 101522516 101525515 CGGTAGTCCACAATCTTCC 58 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 77 3 93926472 93930914 CAGGCGAGACTATCTCAGG 59 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 1 1 4 128 5 78373879 78378415 TAGCAGTCTGCGGAAAGAG 60 78373769 78373787 GAAAGTAGCCACTGTGCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 3 2 2 137 10 29192697 29193601 AGAAGTTCAAGGCAACCGT 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677,ENSRNOT00000067125 1 2 2 80 4 79035879 79035898 TTTCAGTCATGGACCATCCA 59 79035941 79037283 TTGGACCTACTGCTAGTGG 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891,ENSRNOT00000082474 2 2 2 84 3 163954227 163954247 AGAATTACAACATGCCTTGGG 59 163951019 163954182 ACCACAAACTGTTTGATGCT 59 NA Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 2 1 1 60 10 11123351 11123370 ACAGAACCAGATCACTAGCC 59 11123310 11123330 GTTACTGAGGTTCACAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ar ENSRNOG00000005639 ENSRNOT00000009129 2 1 1 80 X 67822857 67826577 TTCAATGAGTATCGCATGCAC 60 67826616 67826637 CCATCCAAACTCTTGAGAAAGG 59 NA Rattus norvegicus 81 Tph1 ENSRNOG00000011672 ENSRNOT00000056109 1 1 1 80 1 102692716 102692736 GATTTCTGACCTGGACTTCTG 59 102689498 102692674 TCTTTGAAGCCAGGATGGT 59 NA Rattus norvegicus 81 Slc26a11 ENSRNOG00000030537 ENSRNOT00000054987 2 1 1 80 10 108494964 108495045 GGATATCTCTTTGTTCCTCTTAGC 59 108495660 108495681 AATGCGGTAATTATTCTGGGAG 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 2 2 2 81 5 139816784 139816803 CAAGAAGACTTGTGATCCCT 57 139816847 139818614 GACGATCACCTGTAGAACC 57 NA Rattus norvegicus 81 Mrpl55 ENSRNOG00000002943 ENSRNOT00000003931 3 1 1 162 10 45552943 45554174 CATGATAAGGGCCTACATCAG 58 45554582 45554600 AGCTCTCCAAGGAGATGTG 59 NA InUTR Rattus norvegicus 81 mrpl24 ENSRNOG00000022234 ENSRNOT00000035271 2 1 1 80 2 187293096 187293373 GTGGACAGGAAACCTACTG 58 187293415 187293435 TCTCCCAGATCTTGTAGAGAC 58 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 3 2 3 83 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 1 1 1 89 1 101406344 101406364 CTACCTGTATCCTACACAGGG 59 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 AABR07061078.1 ENSRNOG00000047920 ENSRNOT00000047620 1 1 1 60 4 103646665 103646688 GACAGATTTCACACTCAAGATCAG 60 103646628 103646651 GCAGTAATAAACTCCCAAATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx42 ENSRNOG00000009474 ENSRNOT00000013046 3 1 1 80 10 94426174 94427423 GCTTTGTCAACAGATCCACG 60 94427465 94427484 CCTCCTCCATATACTGCCAC 60 NA Rattus norvegicus 81 Olr29 ENSRNOG00000056144 ENSRNOT00000081156 2 1 1 60 1 150209825 150209845 TGCTCTAACTCACTTGTAGTC 57 150209785 150209804 ACATACCCAGACAGAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt6 ENSRNOG00000014471 ENSRNOT00000046850 3 1 1 62 1 163148917 163148935 TCTCCTCTCGCAAAGACAC 60 163145435 163145453 GTCTTGGGAGTCTTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Snn ENSRNOG00000058739 ENSRNOT00000088279 3 1 1 60 10 4638450 4638468 GGAGCCCTTTCTACTGGTG 60 4638408 4638427 TTTGGCCTTTCTTTCCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gal3st4 ENSRNOG00000001375 ENSRNOT00000001855 3 1 1 80 12 19590124 19590143 ATCCTCAGAGTTCGGATACC 58 19584478 19590083 CCTGAAGTACCTCTTTGAGGT 59 NA Rattus norvegicus 81 Lcn6 ENSRNOG00000028095 ENSRNOT00000029655 2 1 1 80 3 2892837 2892857 GAAGCTGTTCACCAAATGGAG 60 2892898 2893152 GCACAAGTGAAGTCCTTCTG 59 NA Rattus norvegicus 81 Vom1r74 ENSRNOG00000054932 ENSRNOT00000086592 3 1 1 60 4 87815423 87815441 AGTCTATCTTGGTGCTGGT 58 87815464 87815483 GAGATGATGAAGTCCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2e2 ENSRNOG00000032690 ENSRNOT00000046879 1 1 1 87 15 7871557 7871577 GGATCTGTCTATGAAGGAGGG 59 7871626 7905720 TTCGGAAGGTGACCTTAGG 59 NA Rattus norvegicus 81 Vom1r77 ENSRNOG00000032672 ENSRNOT00000044351 3 1 1 60 4 87872958 87872979 CTATCTGTACTATCTGCCTCCT 58 87872919 87872939 GACGTACTGGGACTGATAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anp32e ENSRNOG00000021168 ENSRNOT00000028744 1 1 1 80 2 198048155 198048174 CTCAGAAGTAGGAGAGGGAG 58 198048216 198053998 TCATCGTCTTCTTCATCCTG 57 NA Rattus norvegicus 81 Gja4 ENSRNOG00000014357 ENSRNOT00000019246 3 1 1 60 5 145376030 145376051 TGATTTCGAATGTAACACAGCC 60 145375991 145376009 GAAAGCCTGGTCATAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc122 ENSRNOG00000042404 ENSRNOT00000030097 3 1 1 81 15 59234091 59234109 GCAAAGCAACAGCTATCAC 58 59234152 59249784 GATCATGAAGTTCCATCTGCA 59 NA Rattus norvegicus 81 Dedd ENSRNOG00000003779 ENSRNOT00000005147 3 1 1 80 13 89720460 89720962 AAGCAGACATGTGACATCAG 58 89721005 89721023 AGAGAAGACATTGCCTTGC 58 NA Rattus norvegicus 81 RGD1306441 ENSRNOG00000031449 ENSRNOT00000043065 2 1 1 114 15 80040891 80041271 TAAGTAAATGCTCGGGCCT 59 80041347 80041367 CGGTGCACTACTGATAATCTC 58 NA InUTR Rattus norvegicus 81 Plin5 ENSRNOG00000047860 ENSRNOT00000073930 2 1 1 96 9 10959507 10959526 GCCTATCAACACTCTTTGGG 59 10959585 10960445 TATGCTGGATCAGCTCCAG 59 NA Rattus norvegicus 81 LOC100912293 ENSRNOG00000046855 ENSRNOT00000073828 3 1 1 81 7 186299 186319 GAAGTGTAAATTCGAGAGGCA 59 184870 186257 AACATCCAGACTGTAGTCCC 59 NA Rattus norvegicus 81 Acer1 ENSRNOG00000047368 ENSRNOT00000075180 3 1 1 80 9 10087493 10087598 ATGGTCATAGGTCTGTTCTCC 59 10087638 10087658 CAGGATGGAGATCTCATCCAG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 3 2 2 80 12 11519367 11519387 CTTCAGCATGAACTGAAACCC 60 11519427 11520419 CACATACAACCGCACATACTC 60 NA Rattus norvegicus 81 Mir3566 ENSRNOG00000046071 ENSRNOT00000071480 2 1 1 60 17 21353626 21353647 GGAAATGTAGTTCAAAGTTCGG 58 21353666 21353686 AGTGGTAGTTCATTGTTAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabarapl2 ENSRNOG00000019425 ENSRNOT00000048998 2 1 1 81 19 44166781 44166800 AAGGATCCAGCTTCCTTCTG 60 44166843 44174525 CTGTCCCATAGTTAGGCTGG 60 NA Rattus norvegicus 81 Galnt10 ENSRNOG00000002488 ENSRNOT00000003447 3 1 1 80 10 43146922 43146943 ACGGATTTAACATCTACGTCAG 58 43146984 43158359 TACTGTTGCAGTTTGGGTG 58 NA Rattus norvegicus 81 Slc9b1 ENSRNOG00000042985 ENSRNOT00000031348 3 1 1 80 2 240550541 240550561 TCAGCTTTAAGAAACACTGCC 59 240550602 240551559 CAGATGCTTCAAAGCCTGTG 60 NA Rattus norvegicus 81 Zwint ENSRNOG00000048682 ENSRNOT00000074404 3 1 1 82 20 17090532 17090550 CTGGAACCTGTAGGATTGC 58 17090328 17090487 TCTTTCTTCCGAGAGTTCCT 58 NA Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 1 1 1 80 3 8993006 8993025 TCGGCTTTATCCTAACCCTG 59 8993068 8997657 TCTCAATGGCCTCAGAGAC 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394,ENSRNOT00000037276 2 2 2 80 8 97561280 97561298 GTCCTGTACGATGTGAACC 58 97561342 97561916 GCAGACATTATCCACGTCC 58 NA Rattus norvegicus 81 Nudt7 ENSRNOG00000011976 ENSRNOT00000034012 1 1 1 80 19 46455888 46458655 GGAGTCTGTCAGAAACAATCTG 59 46458695 46458714 AAGTGGGAATATCTGGTCCC 59 NA Rattus norvegicus 81 Bambi ENSRNOG00000016066 ENSRNOT00000021801 1 1 1 80 17 56906361 56906381 GAAGACATGTGCAATTACCGA 59 56905869 56906322 GTATCTGTTTCCTTGTCCTGAG 59 NA Rattus norvegicus 81 Zdhhc16 ENSRNOG00000046530 ENSRNOT00000072181 1 1 1 80 1 261185494 261185514 ATCTGATCCTCATCGTCTTCC 59 261185556 261185720 CAATGTCATTCCTGCCCTG 59 NA Rattus norvegicus 81 AABR07016992.1 ENSRNOG00000047272 ENSRNOT00000043553 1 1 1 87 15 5774225 5774700 AAATGACTGGTACTGCCAC 58 5774751 5774769 GTTCTCATTCCGTGCTCTC 58 NA Rattus norvegicus 81 Olr402 ENSRNOG00000046228 ENSRNOT00000041987 2 1 1 60 3 16001813 16001834 GGTACTATGGTCACTATCCCAC 60 16001854 16001873 TGCCTATGCGGACATAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863,ENSRNOT00000042180 3 2 2 82 7 143415835 143415853 TCAAGATGGAGATCAGCGA 58 143415133 143415791 ACCTTTACACTGCTTCTTCAC 59 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 2 2 2 80 11 14254243 14265433 CTCCTGGATGAAGAAACTGC 59 14254182 14254202 TGATTCACTCAAGATGTCTGG 58 NA Rattus norvegicus 81 Als2cr12 ENSRNOG00000024917 ENSRNOT00000038431 2 1 1 80 9 65678766 65680470 TGTACCAGGATAGCATTTACG 58 65678706 65678725 CCATCTTCTCATCCTTCTCC 57 NA Rattus norvegicus 81 Fam207a ENSRNOG00000001225 ENSRNOT00000001640 3 1 1 205 20 11887997 11888015 ATCAGAAGCTCAGGGAGGA 60 11893993 11895679 CTCTTCCTCAAGAAGCTGC 58 NA DesignRelaxed Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334,ENSRNOT00000033633 3 2 2 81 1 75466315 75466333 AGATCAGGATGACCCTAGC 58 75466378 75466771 TTTGCCAAACTCACCTGTC 59 NA Rattus norvegicus 81 AABR07020860.1 ENSRNOG00000048922 ENSRNOT00000005532 1 1 1 80 13 43825356 43825374 GTGGGAAAGAGCAGAAGAG 58 43825417 43830082 TGTTTGTTTCCTTTCAGCCT 58 NA Rattus norvegicus 81 Egr2 ENSRNOG00000000640 ENSRNOT00000000792 1 1 1 153 20 22458364 22458382 CCCAGTAACTCTCAGTGGT 58 22456899 22458247 GTTGATCATGCCATCTCCA 58 NA Rattus norvegicus 81 Rnf139 ENSRNOG00000008987 ENSRNOT00000011891 3 1 1 80 7 98770943 98770962 CTCCTACTACGATTCCAGCC 60 98771002 98779486 CTGGATACAACTATACCGAGGA 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040,ENSRNOT00000067610 2 2 6 81 5 48012402 48013302 CCAAGCACAAGGTCTTCAG 59 48013346 48013365 AGGATAAGGTCTGAGAAGCC 59 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 1 1 1 80 2 81137601 81141737 TCCAGAATCTACAGCAGTTCC 60 81141775 81141797 CGGACATTTCAAAGTAAGGACTC 60 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 3 1 1 80 2 81126371 81130298 GATGCTTTAGTTGCTGTGTC 58 81130339 81130359 AACCAGTTCCTTCTTGATCTC 58 NA Rattus norvegicus 81 LOC498084 ENSRNOG00000038987 ENSRNOT00000046605 1 1 1 81 11 63170203 63177106 GTTGGAAGAGGGATGAAGC 58 63177151 63177169 GTCTTGTCGAAAGCCAGAG 59 NA Rattus norvegicus 81 Scgb2a1 ENSRNOG00000023151 ENSRNOT00000031612 2 1 1 80 1 225901120 225901139 GTGAAGCAATTCAAGCAGTG 58 225901179 225901895 AAATATTGCCTCCATCATCACG 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 1 2 2 96 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879512 142879530 ATCCACGCCACTAATCTCC 59 NA Rattus norvegicus 81 Klf14 ENSRNOG00000027557 ENSRNOT00000048436 1 1 1 60 4 58250225 58250244 GCTTTGGCTGATTTAAGCTG 58 58250184 58250202 GAGCTTCTTCCGAGTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 3 3 3 82 1 88587105 88587123 CATGATCCGCAAGTTGGAG 59 88587166 88590624 CCTCTTCATCTTCCAGATAGCT 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 3 2 2 80 14 45848168 45848188 AAATCTCTGCTGTCAGAGACC 60 45844260 45848129 TCTTACTGGTAGGAAGAACAGC 60 NA Rattus norvegicus 81 Dscaml1 ENSRNOG00000016502 ENSRNOT00000022476 2 1 1 80 8 50049538 50049557 AGAAGAGGAAGGAGAAACGG 59 50052118 50052344 TTCGGTTGTTCTTGCTTATCAG 59 NA Rattus norvegicus 81 Nupl2 ENSRNOG00000010435 ENSRNOT00000013865 2 1 1 80 4 7521000 7521021 ACATTTCACCAGAAGAGTTGAG 59 7518401 7520963 GAACAGAGTTTAGATAGCTCTGC 59 NA Rattus norvegicus 81 Tas2r123 ENSRNOG00000046088 ENSRNOT00000047402 1 1 1 60 4 167154811 167154830 TGCCCACATTTGTCTATGAG 58 167154770 167154789 CCACTACCCAGATAACACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000043788 3 1 2 80 1 163556813 163564647 CAGAGTTCCCAAGATTCCC 58 163556751 163556772 CATTGCAATCTCATGTTCTGAC 58 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000081509 2 1 2 86 1 163554750 163554771 AGAGTCAGAACTAGTTGCTGAG 60 163551365 163553881 CGATGGCTGACTAGAAGGG 60 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 2 2 2 80 10 65451257 65451350 GGATCTGAGTACTCCTGCTC 59 65451388 65451411 CAATACTCAGCCTTAATCTCTTGG 59 NA Rattus norvegicus 81 Tfrc ENSRNOG00000001766 ENSRNOT00000002407 3 1 1 80 11 71411111 71411131 TCAGGTAGTAACATTGACCCA 59 71410093 71411073 CAGTTTACCAGTAACTTCTCCAG 59 NA Rattus norvegicus 81 RGD1311595 ENSRNOG00000026942 ENSRNOT00000039428 3 1 1 81 1 247905950 247908409 TTCAGAGAAACAGAAGCCG 58 247905887 247905907 AGTTCTCTAGTGAACTGACCA 58 NA Rattus norvegicus 81 Eif2b4 ENSRNOG00000005301 ENSRNOT00000007763 3 1 1 80 6 26549508 26549527 TCAGGATTACACAACACCTC 57 26549570 26549712 GTCAGGAAGCTGATGTAGG 57 NA Rattus norvegicus 81 Lcn9 ENSRNOG00000027821 ENSRNOT00000044284 1 1 1 80 3 3272685 3272703 GACCTGAGGCTCTTCATCC 60 3272746 3273051 TCCGTGTATCATGATGTGGA 59 NA Rattus norvegicus 81 Rn60_X_0652.2 ENSRNOG00000038169 ENSRNOT00000058100 3 1 1 60 X 64220202 64220220 CCTACGAGAAAGATCCGGT 59 64220160 64220179 TCACCATCTTTGTAGTCGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf2 ENSRNOG00000021261 ENSRNOT00000028883 1 1 1 81 3 124579464 124580026 GAGGTCACCTATGATGTGG 57 124579401 124579419 CTTCCTCCTGGAGTTTCTG 57 NA Rattus norvegicus 81 Olr255 ENSRNOG00000051414 ENSRNOT00000083135 2 1 1 60 1 172485467 172485485 TATGTGATGCCCAAGTCCA 59 172485425 172485444 TGTAGAACACAGAAACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdh2 ENSRNOG00000014490 ENSRNOT00000019507 2 1 1 80 2 240467714 240468908 ATTACCCAGGTATTCAAACTCG 58 240468948 240468967 TCTTCTCAATTTCTGAGGCG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 2 1 4 81 14 85872089 85872108 GAGTTCCGGATATTGGAGGA 59 85872146 85873671 TTAGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175,ENSRNOT00000045087 1 2 2 80 8 113963719 113963740 CTGCAATAGAAGAGGGTAAAGG 59 113962454 113963678 ATGCTGCTATACTCGTGCT 59 NA Rattus norvegicus 81 Cmas ENSRNOG00000013816 ENSRNOT00000018734 3 1 1 80 4 177001614 177001755 TCACAATGAGGTTGACATTGTG 60 177001796 177001814 TCTGCAACTTTCTGGAGGT 59 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 2 3 3 80 5 169285362 169285380 ACGAAGGTCATCAGACCAC 59 169285423 169285524 GATGAGGAGGAAGGAACCAG 60 NA Rattus norvegicus 81 Galk1 ENSRNOG00000006359 ENSRNOT00000008525 3 1 1 81 10 104561879 104562032 TACTCATTGACTGCAGGTCC 60 104561817 104561835 TTGGAGTTGGTGATGAGCA 59 NA Rattus norvegicus 81 Mt1 ENSRNOG00000038047 ENSRNOT00000057898 3 1 1 87 17 78793394 78793412 CAGATCTCGGAATGGACCC 60 78793463 78793481 CATTTGCAGTTCTTGCAGC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Rraga ENSRNOG00000007051 ENSRNOT00000009225 3 1 1 60 5 104941897 104941915 TGAAGTTCTGCTGTTCGAG 58 104941939 104941957 CTCTTTGCACTGGTAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt4 ENSRNOG00000009094 ENSRNOT00000012363 1 1 1 80 7 36646712 36648051 CTGGGAATATTTGAGAATCAAGACC 60 36646656 36646679 CCAGTCTTCCAATATTTCAGTGAC 60 NA Rattus norvegicus 81 RGD1561017 ENSRNOG00000038474 ENSRNOT00000058627 1 1 1 80 10 41545910 41545928 CTGATGCCTTCTCTGTCTG 58 41545070 41545868 GTATGAGTCCCTCACAAACAG 59 NA Rattus norvegicus 81 Usp44 ENSRNOG00000005637 ENSRNOT00000007465 1 1 1 80 7 34752729 34752747 CACAGAAGCCCAGAAACAG 59 34752791 34757894 CCTGACCATCTGAATCGCT 60 NA Rattus norvegicus 81 LOC100362658 ENSRNOG00000023233 ENSRNOT00000074820 3 1 1 80 1 99489236 99493851 AGTGTTGGTGTCAAGAAGTG 58 99493893 99493912 TTCTGGTTTGAAATGCTGCA 59 NA Rattus norvegicus 81 Psmd4 ENSRNOG00000021042 ENSRNOT00000028589 3 1 1 80 2 196200139 196200315 GGGAAGAGGAGGTGAACAC 60 196200077 196200097 CTAGATGTGATCCAGTTCCGT 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193,ENSRNOT00000065584 1 2 2 80 10 37052820 37052841 ACATTTAAAGAGGAAGACCCTG 58 37051186 37052781 CTTGATTTCACACTTGCTACC 58 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 2 2 2 81 7 143137700 143137718 AGATCAAGGCTCAGTACGA 58 143137403 143137655 ATTTCCTCACACTTGGTGC 58 NA Rattus norvegicus 81 Iba57 ENSRNOG00000022725 ENSRNOT00000036940 1 1 1 86 10 45508263 45514528 GTGTATGGACTCCCAGAGTG 60 45508196 45508214 GTACTTCTGTAGGGTGCCC 60 NA Rattus norvegicus 81 AABR07061158.1 ENSRNOG00000043460 ENSRNOT00000066666 1 1 1 112 4 107443762 107443806 TTTGCCAAGAAGTGTCACG 59 107443668 107443686 CTCCTCTAACTGGGACAGG 59 NA Rattus norvegicus 81 AABR07061158.1 ENSRNOG00000043460 ENSRNOT00000066666 3 1 1 114 4 107443762 107443806 TTTGCCAAGAAGTGTCACG 59 107443666 107443685 AACTCCTCTAACTGGGACAG 59 NA Rattus norvegicus 81 Srpx2 ENSRNOG00000003715 ENSRNOT00000005020 2 1 1 80 X 104751502 104751794 ATGTGTAGACATAGATCCACCC 59 104751834 104751853 CGAGCAGTTAGTTTCTCTGG 58 NA Rattus norvegicus 81 Il3ra ENSRNOG00000001325 ENSRNOT00000001792 1 1 1 99 12 18537692 18537807 GCAGATCAACCAGAGTTCAC 59 18537526 18537544 CTTGACACGCACAGAAACC 60 NA Rattus norvegicus 81 Phb-ps1 ENSRNOG00000006625 ENSRNOT00000008661 2 1 1 60 10 68926054 68926072 GTTATCTTTGACTGCCGCT 58 68926012 68926030 AGTCTTTGCTACCAGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000066169,ENSRNOT00000009879 2 2 2 80 5 138246253 138250949 AGAGCAGAGATCTATGCTCTC 59 138250989 138251009 CTGCATCTGCTTACAGAACTC 59 NA Rattus norvegicus 81 Dstn ENSRNOG00000005924 ENSRNOT00000007794 1 1 1 82 3 138046136 138047812 ATGTTCTTCTTGTGGGCAC 58 138047858 138047876 TTCTTCTTGATGGCGTCCT 59 NA Rattus norvegicus 81 Pitpnm3 ENSRNOG00000008323 ENSRNOT00000071764 3 1 1 80 10 58638445 58638463 ACTTCTTCCTCTTCGGCTC 59 58636865 58638403 TCTGGAAACCATCTATCCCAG 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000080260 2 2 3 88 7 143491699 143491718 CTGATGAACGTTAAGCTGGC 60 143490094 143491648 AACTCTCCAGACAACCTGC 60 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 1 3 3 93 1 254670995 254671013 TTCTGCAACGTCTTCATCG 59 254558984 254670938 TGATCCCAAGGTACCTGTC 58 NA Rattus norvegicus 81 Pappa ENSRNOG00000033527 ENSRNOT00000040898 2 1 1 80 5 80978184 80985475 GAGCTATGCAGATGACGAC 58 80985517 80985537 TATACGAGGTCCAGGTAACAG 59 NA Rattus norvegicus 81 Lrrn3 ENSRNOG00000006368 ENSRNOT00000008655 3 1 1 81 6 61404898 61404916 TCAACCAAGGAACTGTGCA 60 61377054 61404857 CAGATAGAGGCATTATTCTTGCC 60 NA InUTR Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 3 2 2 81 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 1 1 1 91 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104821353 104884850 ATACAGTAATGCACAGCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 3 2 2 80 3 113260891 113261146 AGTATCAGCTCAGAGGTTCAC 59 113261185 113261206 TTCTAAAGTTTGTCCACTCAGG 58 NA Rattus norvegicus 81 Bmp1 ENSRNOG00000010890 ENSRNOT00000046054 1 1 1 80 15 52181165 52181183 CGTGTGGAGTTCAAGTCTG 59 52177594 52181124 GGAACATTCATCCTTGTCTGAG 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920,ENSRNOT00000041365 2 2 4 80 12 5709249 5711373 CATTCCTTGGCCTTATACCC 58 5709188 5709206 AACGTGCCATCTGTTAAGG 58 NA Rattus norvegicus 81 Cep78 ENSRNOG00000014041 ENSRNOT00000018951 3 1 1 80 1 233198868 233203874 GCTACTATTCGAGTTGGTTTAGC 60 233198810 233198831 AGCATAGGAGTCTTTACTGAGC 60 NA Rattus norvegicus 81 Rpp30 ENSRNOG00000018718 ENSRNOT00000025412 1 1 1 80 1 254697270 254697289 GATTTGGATCTAAGAGCGGG 58 254697331 254698635 AACTGAGTATCCCAGGTGAG 59 NA Rattus norvegicus 81 Lancl2 ENSRNOG00000006810 ENSRNOT00000008948 3 1 1 80 4 88540303 88540323 CCTGTATGCCTTACTGTACCT 59 88539351 88540265 GCAGTGACTACCTCTTTAATAGC 59 NA Rattus norvegicus 81 LOC100912371 ENSRNOG00000049321 ENSRNOT00000071145 3 1 1 60 4 1730695 1730713 TTCTGTGACGGTAACACCA 59 1730736 1730755 AGAGCTGCAGTAAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr70 ENSRNOG00000013336 ENSRNOT00000060146 1 1 1 80 2 56996377 56996395 TCATGCACCTGGTACAGAC 59 56994347 56996335 GTATCATCACCTCCACGAGAG 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000055427 2 1 2 80 10 85275314 85275333 CAAGTGACAGTGCATCAGAG 59 85275229 85275272 CATCAACAGAGCACTCTTGG 59 NA Rattus norvegicus 81 Asmt ENSRNOG00000001324 ENSRNOT00000001791 3 1 1 97 12 18524782 18525081 CATCTACAGGTCAGAGCCTG 60 18524704 18524722 AGAGGTCAAAGGCTGTGAG 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 2 2 2 80 7 143521607 143521625 AAAGGTCGCCTACAGTCAG 59 143520633 143521567 GTTGATCTCTTCCTCATACTTGG 59 NA Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 2 2 2 80 3 3820394 3820487 GAAATTCAGGACATCAACCAG 57 3820334 3820352 GGAAATCTTCTCCCAGTCG 58 NA Rattus norvegicus 81 Zfp956 ENSRNOG00000026874 ENSRNOT00000059263 3 1 1 80 4 77633950 77633968 TACCCAGTGTGACAAACGT 59 77634010 77635210 ACTACACAGAGAAACCCTGAG 59 NA Rattus norvegicus 81 Ninl ENSRNOG00000027747 ENSRNOT00000068689 2 1 1 80 3 146721532 146721551 CTCGGTTACACAATGTGGAG 59 146720081 146721495 CAGATCTGGTATTCTTCTCAAACTG 60 NA Rattus norvegicus 81 Rn60_5_1052.2 ENSRNOG00000051168 ENSRNOT00000076789 1 1 1 60 5 101120015 101120034 TGACTTGCCTTCTATCACCA 59 101119974 101119994 CCCTCCAAGTTCCTTTATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txndc11 ENSRNOG00000002452 ENSRNOT00000003332 3 1 1 80 10 4625435 4625457 CTCTCAATCACATCTTCATCCAG 59 4625496 4629822 TCTGAGACACATCGATCCTG 59 NA Rattus norvegicus 81 AC130035.1 ENSRNOG00000042235 ENSRNOT00000067227 1 1 1 80 5 172882785 172882804 AAAGAAGGCTGAGACCTACC 59 172882844 172883060 TTCTGAGTGCCAACTATTTCTG 59 NA Rattus norvegicus 81 Olr279 ENSRNOG00000046162 ENSRNOT00000047040 2 1 1 60 1 172942967 172942990 GAACCCTATCATTTATAGCCTCAG 59 172942930 172942950 AAACTGTCTCTTCATAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 1 2 2 80 6 66984471 67083531 TTTATCCAGGTACTACTGAGAGG 59 66984413 66984433 CTGCAATGAATCCATGAACTG 58 NA Rattus norvegicus 81 Nudt22 ENSRNOG00000021158 ENSRNOT00000028734 3 1 1 80 1 222247955 222247978 GAATTATTATCTGAGTGGAGGACC 59 222247671 222247916 AGTCTCTGTACCCTCTGTG 58 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 1 1 1 60 13 42261362 42262688 GATTGTTCTGGCTTCCAGG 59 42261320 42261341 TGAAATTCTTCACACTGGTAGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 2 1 1 81 4 88676062 88684041 AAATGAATTTCAGGGAGGAAGC 59 88676002 88676021 TCAAGCTCATCCTGCTTCTC 60 NA InUTR Rattus norvegicus 81 Pde6a ENSRNOG00000017816 ENSRNOT00000024171 1 1 1 80 18 56590624 56592402 CAACCTCTACCAGATGAAATCAC 59 56592440 56592460 AACTCCAAATGATGCCTTTCC 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81637025 81637664 GACATCTGAGGTTGTGATTGG 59 81636965 81636986 CCATTCACGCTAAGATCTTGAG 59 NA Rattus norvegicus 81 Necap2 ENSRNOG00000008427 ENSRNOT00000011394 3 1 1 80 5 159597316 159597336 TTTATTGGGATTGGCTTTGGG 59 159596106 159597275 CTTCACCCACTTGAAATGGT 58 NA Rattus norvegicus 81 Tekt2 ENSRNOG00000011033 ENSRNOT00000014721 3 1 1 80 5 144344508 144344608 GACCAACAACCAGACTGTG 59 144344446 144344466 TTCCATCGATTGACAGTATCG 58 NA Rattus norvegicus 81 Cd59 ENSRNOG00000042821 ENSRNOT00000067085 2 1 1 83 3 94018610 94025287 TTCCACAGGTGTTAGCCTC 59 94025334 94025352 AGGTTAGGAGAGCAAGTGC 59 NA Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 3 1 1 80 1 219998679 219999287 GAGCATGTGACTATGCTTCG 59 219999330 219999348 ACTGTCTACACGCTCTTGG 60 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 2 3 3 80 15 12582224 12582334 GAAAGTGTTGAAGATAAGCTGG 58 12582374 12582393 TGTCTGTTGAAGTTCATGGA 57 NA Rattus norvegicus 81 Rn60_X_0725.2 ENSRNOG00000051067 ENSRNOT00000076314 1 1 1 60 X 71648328 71648347 GAGAACTGGTTCTACACAGG 58 71648370 71648388 CACCACCATGGAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egln3 ENSRNOG00000005053 ENSRNOT00000007219 3 1 1 96 6 75055997 75056017 GGTTATGTTCGTCATGTGGAC 59 75055128 75055939 CTCCATGTAACTTGGCGTC 59 NA Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 3 1 1 80 7 75328478 75333671 CTTCCCTTGGAACTCTGCT 59 75328416 75328437 CACTGTACTGAAATCTCAGCTC 59 NA Rattus norvegicus 81 Fras1 ENSRNOG00000002053 ENSRNOT00000002814 1 1 1 80 14 14455782 14461483 AAGAACATCCGAACAGAATCC 59 14455722 14455741 ATGTCGGTCTGAGATTAGGG 59 NA Rattus norvegicus 81 Rn60_13_0841.2 ENSRNOG00000051185 ENSRNOT00000076486 3 1 1 84 13 79148138 79148156 CATGTGCAGAAGGCTAAGC 59 79147841 79148090 AAACATGGGCTTGATCACC 58 NA Rattus norvegicus 81 Utp11l ENSRNOG00000007174 ENSRNOT00000009882 3 1 1 95 5 142669973 142669996 TCGATAGGGTCTATAATAGACCCA 60 142667652 142669919 CTTTGGCTATCCGCTTGAG 59 NA Rattus norvegicus 81 Ganab ENSRNOG00000019724 ENSRNOT00000035650 1 1 1 80 1 225111361 225111615 TTTCACAACTATGAGGGTTCAG 58 225111655 225111674 TTCAGGACCATTGAACACAG 58 NA Rattus norvegicus 81 LOC680579 ENSRNOG00000032160 ENSRNOT00000049161 1 1 1 60 14 44225528 44225546 GCTCACTGACTTCAGACTC 58 44225486 44225506 AGCTTTCCGTACATACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 2 1 1 80 13 113802927 113802947 TACCAAGCCTCCAGTTTACAG 60 113795600 113797987 ATCCATGCATCGAATTCTTGG 59 NA Rattus norvegicus 81 RGD1564425 ENSRNOG00000038259 ENSRNOT00000058238 2 1 1 60 3 123997020 123997039 AGCAGATCAAACCTTACACC 58 123996979 123996999 AACCGTTTCTCATACAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0836.2 ENSRNOG00000051207 ENSRNOT00000076646 2 1 1 60 13 78674281 78674300 GAAAGAGGAGAGGTACTCGG 59 78674323 78674341 GGAACGACTCCATGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 3 2 2 80 6 80093494 80093515 CTAAAGTACCTGTTACTCAGGC 58 80092464 80093458 GTACTGGCTGTAAGAATCTATTGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075974,ENSRNOT00000075878,ENSRNOT00000091249,ENSRNOT00000077505 1 5 9 82 4 14070573 14070594 GTGTTGAAACTTTCTGAGTCTC 58 14070635 14071125 CCTGGTTCAACTAATTCATGC 58 NA Rattus norvegicus 81 Arhgap42 ENSRNOG00000026821 ENSRNOT00000031492 1 1 1 80 8 7245730 7245750 GTACTTACGACAAAGGAAGCA 58 7243700 7245690 TAACAAGGCCATTCATCTTCC 58 NA Rattus norvegicus 81 RSA-14-44 ENSRNOG00000042954 ENSRNOT00000068400 3 1 1 60 4 96832111 96832131 GTTTCCTGATGTTTATGTGCC 58 96832152 96832171 ATCCACTTCGATATCAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3b ENSRNOG00000001253 ENSRNOT00000060444 3 1 1 80 12 16298837 16301240 TTCTCACCTTGTGAAAGATACC 58 16298778 16298797 CCAGATAATGATGGCCTGAG 58 NA Rattus norvegicus 81 Ankrd16 ENSRNOG00000028168 ENSRNOT00000025011 1 1 1 80 17 70389293 70391136 TTTATGCAGCGAAGGAAGGA 60 70389232 70389253 GTTCATCTGTGGAGTTGATGTC 59 NA Rattus norvegicus 81 Ankrd16 ENSRNOG00000028168 ENSRNOT00000025011 2 1 1 81 17 70389294 70391137 CTTTATGCAGCGAAGGAAGG 59 70389232 70389253 GTTCATCTGTGGAGTTGATGTC 59 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034069,ENSRNOT00000034075 2 2 2 80 18 61788776 61788794 ACGTGCTATCCAGGATACC 59 61787194 61788733 ACACTCATCGATATCCAGGC 60 NA Rattus norvegicus 81 Dcx ENSRNOG00000047712 ENSRNOT00000074322 2 1 1 80 X 115113716 115113734 CAACACCTAAGTCGAAGCA 58 115106382 115113672 GCAGGTACAAGTCCTTGTG 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 1 2 2 82 7 116959577 116959849 GTTCATCTACTCACTGGACCT 59 116959515 116959533 CTGAGAGGATGATGGGCTC 59 NA Rattus norvegicus 81 Plekhm2 ENSRNOG00000012163 ENSRNOT00000016333 2 1 1 80 5 160196544 160197031 AGTACTATGTCAGGAATGCCC 59 160196484 160196503 TAAACTCCAACCCAGACACC 60 NA Rattus norvegicus 81 AABR07002473.1 ENSRNOG00000046339 ENSRNOT00000012225 1 1 1 81 1 74775020 74777263 TCAACTGGAGAACTTCTGTC 57 74778241 74778261 GGTCCATAGGAAATCTGAAGG 58 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 2 2 2 80 13 107692270 107733316 AAGACGAAGGAAGAGGTGG 59 107692208 107692226 TGTTTCCTTGAACTCGGCT 60 NA Rattus norvegicus 81 Rspo1 ENSRNOG00000009656 ENSRNOT00000012811 3 1 1 96 5 143005916 143005935 CTTGTACTTACACAAGGGCC 59 143005994 143006309 TTCACATTGTGCAGGACTG 58 NA Rattus norvegicus 81 Fbxo3 ENSRNOG00000009549 ENSRNOT00000014478 1 1 1 80 3 93993596 93993616 GTCTTTAATGTTGCCATCCCA 59 93993658 93998512 AGGACCCATTTCCAATCGG 60 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 3 2 2 80 18 56840133 56840152 CTCTTTCCAAGAAGACCACC 58 56839385 56840091 ATTCCTTGTCTTCTGTCCTG 57 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000070893 1 1 2 80 15 2818349 2818367 GAAGAAGAGGCAGACAGAG 57 2818265 2818308 GTGGTTAAAGTTCTACAAAGGG 57 NA Rattus norvegicus 81 Fut9 ENSRNOG00000008475 ENSRNOT00000011393 2 1 1 124 5 40131988 40237348 GCTGGGATCGATTTAGAATGTG 60 40034638 40034656 TGCCTTTGGATGTTGAGGT 60 NA InUTR Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 2 2 2 80 4 89165557 89165577 CCACTGTGAAACTATTCTGGG 59 89165619 89167470 TGCCTGTCAGGAACAAGAG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 1 3 3 80 10 84630213 84631885 GGAGACCAACTTAACAGTTGC 60 84630153 84630173 CTTCTCTTCACTGAGAGGTGG 60 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 2 2 2 81 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066375 117066586 CCACATGAAGCTATAACTACCG 59 NA Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000034583 1 1 2 81 13 79081206 79084172 GGAGCAAGGACATCAATGC 59 79081143 79081161 TCCCTGTCCTTATCGTCGA 60 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000009158,ENSRNOT00000044161 1 2 2 80 13 112078081 112079566 CAGACACCCTTGGATTGAC 58 112078019 112078039 AAGTTCTTCTGAATCTGGAGG 57 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197 3 1 2 107 12 2201970 2202150 CTGCCACGTACTTAACAGGA 60 2202220 2202238 TCATCCATGGGACACAGTG 59 NA InUTR Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000023329,ENSRNOT00000087067 3 2 2 80 1 154008756 154032613 GCTGTGACAGATAAGTTCGG 59 154032656 154032674 GTTGAGTAGACGGAAGGCA 59 NA Rattus norvegicus 81 Kazn ENSRNOG00000014322 ENSRNOT00000019447 2 1 1 80 5 160675554 160677162 CCCTATTGTACAGTCACTAGAGG 60 160675496 160675514 GAGATGGAGCCAAATCCCA 60 NA Rattus norvegicus 81 Lrfn2 ENSRNOG00000011803 ENSRNOT00000015705 1 1 1 91 9 13847046 13875742 ACTGATTTACAGGATGATCCCA 59 13846976 13846994 TAGCCAGTACGCACAAGTC 60 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 2 1 1 84 3 8832805 8835815 CTCAAGAAGTTCCAGGAGGA 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Spink7 ENSRNOG00000032873 ENSRNOT00000040936 3 1 1 82 18 57920081 57920100 TTCACAGCAACCTGTTTGTG 60 57918245 57919170 ATGTCACAGTCCACTGTGG 60 NA Rattus norvegicus 81 LOC685221 ENSRNOG00000027305 ENSRNOT00000038594 3 1 1 62 6 108831174 108831194 GGATCAAGAATTCCCATTGTG 57 108832627 108832646 TCCTAGAAGTGTACCAACGA 58 NA DesignNoJunction Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 3 1 1 60 3 44832994 44833015 GAACATTGAAATGGAATCGACG 59 44833035 44845170 AGCTCTCAAGCCACATAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 1 3 3 80 3 2514182 2514275 GGTCAAGAAGGAGATTCCCA 59 2514121 2514140 AGTCCTACTAGCAACCACAG 59 NA Rattus norvegicus 81 Fga ENSRNOG00000024848 ENSRNOT00000064091 3 1 1 80 2 182010311 182010329 AAAGCGCAACAGATTCAGG 59 182010373 182011034 ATCAATGTCCACCTCCAGG 59 NA Rattus norvegicus 81 LOC361914 ENSRNOG00000028985 ENSRNOT00000042494 1 1 1 80 2 88454304 88475537 CTACCAAGACCTTATAAGGTACG 58 88454246 88454264 CACTGGTGTGAGAATGAGG 58 NA Rattus norvegicus 81 Olr1637 ENSRNOG00000025640 ENSRNOT00000034647 3 1 1 60 15 27997547 27997568 GAAGATGTTGAGCAATTTCCTC 58 27997508 27997528 AGTAATACAGGCAGCAAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 2 2 2 80 10 4553529 4553631 CATATGTTAGAGCTGAGCTCTC 58 4555637 4555658 TATCTTCCACAGAATGGTTCAC 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 3 2 2 80 10 4559897 4559915 CCTCTGACTTCACCCTTGG 60 4559959 4561031 GGTGGACAGATCTCGAGTG 60 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 1 1 1 80 2 88130635 88130654 TATAACACCTTCGGAGAGGC 59 88129785 88130594 TTTCTCCCGTCCTATCTTCAG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346,ENSRNOT00000025993,ENSRNOT00000090453 1 3 4 83 17 72241143 72247227 CTCTGAACTCTATGGCCGA 59 72247274 72247292 AGTTCGTGCAGATTAACCC 58 NA Rattus norvegicus 81 Acadl ENSRNOG00000012966 ENSRNOT00000017686 2 1 1 80 9 73849905 73849925 GTGGAGAATGGAATGAAAGGA 58 73849323 73849863 TAGTTCTGCTGTGTCCTGG 59 NA Rattus norvegicus 81 Adam7 ENSRNOG00000014054 ENSRNOT00000019209 3 1 1 80 15 49453740 49455649 TCCACAGATCTTGGATCACTG 60 49453680 49453699 TTACAAGTGCTGATGCTTGC 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000040153 ENSRNOT00000061786 2 1 1 80 6 108746048 108747550 GTCGTTCTCATTTACGATCCC 59 108747589 108747610 CATCAGTTTAGGAGTCAGTCTG 58 NA Rattus norvegicus 81 Syvn1 ENSRNOG00000020950 ENSRNOT00000028462 3 1 1 80 1 221411210 221411229 GTGGCACTCTTTACACTCCT 60 221411272 221411382 GCTGCGTTCCATAAAGTCC 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799,ENSRNOT00000027574 3 2 2 80 1 267058256 267058274 GAGATCGGCTTTGAGAAGG 58 267053426 267058214 GCCTAGGTATCTGATGTACCA 59 NA Rattus norvegicus 81 Malsu1 ENSRNOG00000009035 ENSRNOT00000011970 1 1 1 80 4 78736553 78736574 ACTTTGTAATTGGTAGTGGGAC 58 78736612 78742430 TCAGGTGTTTATACGTCTTCAC 58 NA Rattus norvegicus 81 Ifnb1 ENSRNOG00000006268 ENSRNOT00000008224 2 1 1 60 5 106865637 106865656 CAAAGCACTAGCATTCGGAC 60 106865596 106865614 GGTTGAGCCTTCCATTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3b2 ENSRNOG00000020412 ENSRNOT00000068497 2 1 1 80 1 220653105 220655678 TATCCCTGAGAGCTGTCCT 59 220653043 220653062 TAAAGTGGCTTCCCAGTCTC 60 NA Rattus norvegicus 81 Exosc4 ENSRNOG00000012348 ENSRNOT00000016464 2 1 1 89 7 117392240 117392359 GACATTTATGTGCAGGTGCT 59 117392410 117392429 TATCCCAGCATCCATCACTG 59 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 3 2 2 90 19 52525004 52529237 GTCTTCAAAGGTGTACCACTG 59 52529289 52529307 CACATCACAGAAGAGGCCA 60 NA Rattus norvegicus 81 Lrch2 ENSRNOG00000029582 ENSRNOT00000045463 3 1 1 80 X 118580565 118615435 ACCCAAGCAGATCTTTCCA 59 118580503 118580523 GTTTAAAGTTTCGAGTGGTGC 58 NA Rattus norvegicus 81 Mrps35 ENSRNOG00000001842 ENSRNOT00000002520 3 1 1 80 4 181452964 181454555 CAAGACAGACAGATGCCCT 59 181454596 181454617 CAAGATTCATGGTACAGGACTG 59 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000047971 ENSRNOT00000072992 2 1 1 60 1 32570372 32570390 AGAAGCGCTGTAGAGACTG 59 32570330 32570348 TTACAGAGGACAAACCAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 3 2 2 80 14 91855030 91855051 AGAAGAACATAAAGAGCGATGC 59 91855089 91858065 GTTTCTTCCTTAATGACTGGGT 58 NA Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 1 1 1 60 4 165828378 165828396 CATGGGCAATCTCCTTCTC 58 165828336 165828356 CCATGATTCTTTGGATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 3 2 2 80 5 33177436 33177454 TGAATGGAAATCGGTCCAG 58 33176954 33177298 GTGAGTGATGTATCCCAGG 57 NA Rattus norvegicus 81 LOC100909611 ENSRNOG00000032126 ENSRNOT00000044305 2 1 1 60 3 76495913 76495931 CAGTGATGGCCTATGACAG 58 76495871 76495892 ATTACAACTGTGTAGAGTAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp4bl1 ENSRNOG00000034071 ENSRNOT00000052393 3 1 1 60 4 67060469 67060488 AGACTTCCACAGCTATCTCC 59 67060510 67060529 AGCTCATCCTTGTCAAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddit4l2 ENSRNOG00000010047 ENSRNOT00000013661 3 1 1 80 2 242882846 242884544 GAGTCTGCTAAGTGATTTCGAC 59 242884583 242884603 GTTGTCTCTTCAAACACCACC 60 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000076488 3 1 2 96 5 138504297 138504840 CTTTACTTGTAGGACACGGG 58 138504898 138504917 CAGTCTCTGGTTTCTATCCC 57 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036,ENSRNOT00000013366 3 2 2 80 15 103832116 103836648 TCTGGGACAAGGCATTAGAC 60 103832055 103832073 CGACCACAGCTAACAACTC 59 NA Rattus norvegicus 81 Mrpl20 ENSRNOG00000018647 ENSRNOT00000025213 3 1 1 84 5 173250810 173252431 TAGTTAAGTGCCAGGTGGA 58 173252478 173252497 GCAGCCAAAGATTTAAACGT 58 NA Rattus norvegicus 81 Olr1468 ENSRNOG00000052919 ENSRNOT00000026857 2 1 1 80 10 59973589 60126623 TCTATGCCCTGTTCCTGTC 59 59973527 59973547 GGGAATCCAGTAGAATGAGGA 59 NA Rattus norvegicus 81 Rhox13 ENSRNOG00000028050 ENSRNOT00000035489 2 1 1 80 X 124270905 124274048 TGAAGTCAAAGTGAAGGTGTG 59 124274087 124274108 ATATTTCTCAGCATTGCTCGTC 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 2 1 1 80 1 167000534 167000553 TACAGCACCCAGAGAATCTG 59 166998608 167000494 AGAATGTTGTTAGAACAGGGTC 58 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 3 2 2 87 6 99388227 99388245 ACGTTTACTTCAAAGCCCA 58 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Cep41 ENSRNOG00000010950 ENSRNOT00000014621 1 1 1 80 4 57979418 57979437 ATTCAAGTTGCTTCCCTGTC 59 57974303 57979375 TGCAGAATCACTGTCTTCG 58 NA Rattus norvegicus 81 LOC100912289 ENSRNOG00000026440 ENSRNOT00000036657 2 1 1 60 1 201901488 201901509 CAGTTCTTCATCAGACCAAGAC 59 201901529 201901548 TCGTGTCATCTTCAGAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr252 ENSRNOG00000036787 ENSRNOT00000055174 2 1 1 60 1 172395142 172395162 ACAGAAAGCCTTCTCTACCTG 60 172395102 172395122 GGTTCCATAGAACAGAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 3 2 2 80 13 95208262 95208281 TCAGATGTCTTCAGTGGACC 59 95196386 95208223 CTTCTGTCCATTCTTCTCTTTCC 59 NA Rattus norvegicus 81 Shroom3 ENSRNOG00000002208 ENSRNOT00000003001 1 1 1 80 14 16623941 16625553 GAAGAAAGGAGTTCTCTGAATGAG 59 16623884 16623902 CAGGTTCTCCTTGAGCTCC 60 NA Rattus norvegicus 81 Slc6a19 ENSRNOG00000026501 ENSRNOT00000036714 3 1 1 80 1 32213536 32213696 GTGAACACGAACATCCTGAC 59 32213739 32213757 ATAGGCCTCGAAGTTCTCC 59 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 2 1 1 80 1 266068429 266068448 CCTAGCCAAGAGGCTATACC 59 266068233 266068388 CTGAAGTCATTGTTCTTGCCC 60 NA Rattus norvegicus 81 Mir449c ENSRNOG00000036435 ENSRNOT00000054547 1 1 1 60 2 44896103 44896121 TGGCTGTTAGAACTTCGTC 58 44896145 44896163 CTTCTAAGTGCAGCAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpgat1 ENSRNOG00000004402 ENSRNOT00000064492 1 1 1 80 13 110462436 110465139 ATAAGACAGGAGCCTTTCCTC 59 110465181 110465199 GTATCCACACGTTGCTGAG 59 NA Rattus norvegicus 81 Rrp9 ENSRNOG00000012927 ENSRNOT00000017469 3 1 1 81 8 115185197 115185216 ATTACGTGCTTGGTCATCAC 59 115185257 115186006 CTACACTCCACTTTATGATGGT 58 NA Rattus norvegicus 81 Suv420h2 ENSRNOG00000017508 ENSRNOT00000023744 2 1 1 80 1 72672200 72672366 CATAAGATGAATGTCAGCCCT 58 72672140 72672158 TTGCCTTAGGAAAGCTTCC 58 NA Rattus norvegicus 81 Zfp473 ENSRNOG00000026572 ENSRNOT00000037973 1 1 1 105 1 100739047 100741342 CAGTGATGAAGCGACTGAG 58 100738960 100738978 AAAGTTGAGTTCCTCCGTG 58 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000087057 3 1 4 61 5 50232937 50232955 AACCTTGTTTCGAGCTGTG 59 50232243 50232915 GTCATGGTTGATACAGAACAGG 59 NA DesignRelaxed Rattus norvegicus 81 Prdm5 ENSRNOG00000023679 ENSRNOT00000009569 3 1 1 80 4 96739886 96739906 AAGAGAAAGCTCATATGCTCG 58 96739946 96744228 CTCATGAATCTTCCTGTGCTC 59 NA Rattus norvegicus 81 LOC100912429 ENSRNOG00000046920 ENSRNOT00000075184 1 1 1 80 15 19278211 19281263 CAAAGTGAAGCAGGAACGG 60 19278149 19278169 TGCTCCTGTTCTGATAACTCC 60 NA Rattus norvegicus 81 Samd15 ENSRNOG00000050413 ENSRNOT00000074634 1 1 1 128 6 111224620 111224639 GGACGTAGACATCCTAGGAG 59 111225596 111241159 AGATGGGAGCCTTCATGTC 59 NA InUTR Rattus norvegicus 81 Zbtb8b ENSRNOG00000026898 ENSRNOT00000037106 1 1 1 67 5 147634798 147634819 GTTCAGAACGACTGGTATAGAG 58 147630935 147630953 CACTTGTGGAGCTTGATGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07041140.1 ENSRNOG00000006459 ENSRNOT00000050793 3 1 1 112 X 120314468 120314488 ATAAAGACATTGTGGCTGAGG 58 120314562 120314583 GCACCTGTATTTCTTGATTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 3 1 1 80 10 46791431 46798900 CTTACAGAGGAATATCCAACCCT 60 46798938 46798958 CTTCCGAGTTAAGAAAGGGTG 59 NA Rattus norvegicus 81 Plekhg3 ENSRNOG00000006570 ENSRNOT00000008573 1 1 1 80 6 99642996 99643267 AACAATACAGTATCCAGGCCA 59 99643308 99643327 GATTCTCCAGGATGAGCCTC 60 NA Rattus norvegicus 81 Tas2r117 ENSRNOG00000033896 ENSRNOT00000040828 3 1 1 60 4 166987218 166987240 TAGGAGACATGAAGATGAGACAG 59 166987260 166987278 TTCCTGAATTTCTGCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pemt ENSRNOG00000054423 ENSRNOT00000083698 2 1 1 80 10 46352933 46399239 TGGAATGTGGTAGCAAGGT 59 46352871 46352891 GGAATAGCAGGCTAGGTAAGG 60 NA Rattus norvegicus 81 Olr607 ENSRNOG00000050737 ENSRNOT00000007782 2 1 1 60 3 76250694 76250713 GGAACCTTGGGATGATAGTG 58 76250653 76250671 AAGTACATGGGAGTGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f4 ENSRNOG00000014982 ENSRNOT00000020175 1 1 1 80 15 26153838 26157074 ATGGCTAGCATTCAACATCC 58 26153777 26153797 CTGAGTACTGTTCCAATGGAG 58 NA Rattus norvegicus 81 Slc35f4 ENSRNOG00000014982 ENSRNOT00000020175 2 1 1 80 15 26157254 26159127 ATCTGCACTGTATAAGGTTCTG 58 26157195 26157214 AAGGTAGAGACAAAGTGTGC 58 NA Rattus norvegicus 81 Olr91 ENSRNOG00000048810 ENSRNOT00000075766 3 1 1 60 1 168447755 168447774 CTCTGTTTAGCCATTGCTCC 59 168447794 168447815 CCATAGAACATGAACCAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chaf1a ENSRNOG00000046479 ENSRNOT00000071107 1 1 1 80 9 11005796 11006048 GACATCATGAACAGGGATGTG 59 11005736 11005755 CATTCGGCCAAACTTCTTCC 60 NA Rattus norvegicus 81 Abcb11 ENSRNOG00000050860 ENSRNOT00000075107 3 1 1 80 3 55551687 55551707 CTAACCTTGGTGATTCTTGCT 58 55548425 55551647 CGTGAACTTGGCTATACTCAG 59 NA Rattus norvegicus 81 Gbp2 ENSRNOG00000031743 ENSRNOT00000068683 2 1 1 80 2 248291135 248291433 GGAGATTGAAGTGGAACGG 58 248291476 248291495 TCAAACTTCTCCTGCTTCTC 58 NA Rattus norvegicus 81 Gbp2 ENSRNOG00000031743 ENSRNOT00000068683 3 1 1 80 2 248291138 248291440 GATTGAAGTGGAACGGATTAAGG 60 248291480 248291498 AGCTCAAACTTCTCCTGCT 59 NA Rattus norvegicus 81 Haus5 ENSRNOG00000024266 ENSRNOT00000031044 1 1 1 80 1 89119425 89119443 AAGCCAAAGTGGATGTGAC 58 89119274 89119381 CTCGGACATCACTCAACAC 58 NA Rattus norvegicus 81 Ankrd13d ENSRNOG00000028247 ENSRNOT00000025641 1 1 1 80 1 219530137 219530155 CAGTCGACTCACTTCTCCT 59 219523842 219530097 CAGATACCACATTTGTTCCTCTC 59 NA Rattus norvegicus 81 Stk16 ENSRNOG00000019294 ENSRNOT00000026194 3 1 1 81 9 82413221 82413600 CTGATGTCTGGTCCCTAGG 59 82413645 82413663 TCACCTTTCTGGAACACCA 59 NA Rattus norvegicus 81 Fam71a ENSRNOG00000029371 ENSRNOT00000043672 2 1 1 60 13 109768723 109768742 TAGAGACTACTGGAAAGCCT 57 109768682 109768700 GAAAGGATGACTGGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vopp1 ENSRNOG00000006646 ENSRNOT00000008885 2 1 1 87 4 88441268 88469741 TAATGGAGTGCACAGAGGC 60 88483667 88483686 CAGTCTTCATAGGAACGGCA 60 NA Rattus norvegicus 81 AABR07072118.1 ENSRNOG00000047955 ENSRNOT00000049304 3 1 1 80 10 44187970 44187988 ACTCCGTTATCCTGTCCTC 58 44188032 44188051 AACATGAAGCCATCCAGGA 59 NA Rattus norvegicus 81 Rab18 ENSRNOG00000018972 ENSRNOT00000025828 1 1 1 80 17 59861227 59869926 CAATATGGGATACAGCTGGTC 58 59869965 59869986 CTAATATAACTCCCTGTGCACC 58 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 1 3 3 80 8 72479966 72479986 GCTGTGAGAAGAATAAGTGGT 58 72477107 72479926 GACTTAGTAAAGTCTGGGTGG 58 NA Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 3 1 1 60 3 76790592 76790612 AGCACATCTGTGGTATATTGG 58 76790632 76790652 GCTGAAGAGTGGATACAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203,ENSRNOT00000058422 1 2 2 80 11 81714671 81714998 ATTCCACACCAGACTCTGC 60 81714609 81714627 CGTTGGTGTCATTGAACCG 60 NA Rattus norvegicus 81 Lpl ENSRNOG00000012181 ENSRNOT00000016543 2 1 1 80 16 22546243 22546261 ACAAGGTCAGAGCCAAGAG 59 22543687 22546205 CTTGGTAATGGAATACTTTGTAGGG 60 NA Rattus norvegicus 81 Ttll5 ENSRNOG00000009318 ENSRNOT00000012895 2 1 1 80 6 109744211 109744231 AGGATTATGGGAACAAGTGGA 59 109744271 109745188 CCATCAATGCAGTTGTATCCT 59 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000019206 ENSRNOT00000025988 2 1 1 112 1 194768973 194769331 TCTTATGTCGTCGGTGGAG 59 194768879 194768897 TTCTGGAACTTGGTCAGCA 59 NA Rattus norvegicus 81 LOC100912186 ENSRNOG00000050613 ENSRNOT00000071489 3 1 1 60 4 1611811 1611830 TATGTACCTAAAGCCCTCCT 57 1611851 1611871 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 1 2 2 80 1 100892443 100892652 CTTCCATGACAGCATCACC 59 100892695 100892714 ATGTGGAGCATTCTTTCCAG 58 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 2 3 3 80 15 23830046 23840165 AGTGGTATGAAAGATGTTCCAG 58 23840203 23840224 GTAAGTCATCTGTGAGAAGAGC 59 NA Rattus norvegicus 81 Mmp10 ENSRNOG00000032832 ENSRNOT00000013119 1 1 1 86 8 5735343 5735454 CACATCTCCTACAGGATTGTG 58 5735502 5735520 CCAGACCTTCAAAGCTCTC 58 NA Rattus norvegicus 81 Usp10 ENSRNOG00000016509 ENSRNOT00000022432 1 1 1 80 19 52591651 52596978 AGATTGCAGAGTTATTGGAGAC 58 52597017 52597037 TTCCTTTATTGATCAGCCCAC 58 NA Rattus norvegicus 81 Klhl21 ENSRNOG00000003334 ENSRNOT00000004508 1 1 1 80 5 169185233 169186874 ACTTCGTCAGGGATGACTC 59 169186915 169186936 GGTTCATAGATGGGATCTTGTC 58 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 3 2 2 130 1 165886104 165886123 GAGAGCGATCTTCCTGAGTC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Anapc13 ENSRNOG00000008459 ENSRNOT00000011203 2 1 1 81 8 111111129 111115345 CGATTCCACTGAGTGAGCT 60 111115386 111115408 CACTTCATCTCCTGTTCTTTCAC 60 NA Rattus norvegicus 81 Prr20e ENSRNOG00000026675 ENSRNOT00000039058 2 1 1 82 4 121046321 121052114 CCATCAAGACTCCGATGAG 57 121052158 121052178 CTGACTCATCTACTTCCACTG 58 NA Rattus norvegicus 81 Zbtb48 ENSRNOG00000009595 ENSRNOT00000012745 3 1 1 80 5 169193751 169194101 GAGATGCCCTACAAGTGCT 60 169193689 169193707 ATGCAGCTTGATCATGTGG 59 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928,ENSRNOT00000008976 1 3 3 80 13 48077272 48079185 AAGTGACGATGAGTGTGAG 57 48077210 48077228 TTGAAAGACAGTTCTCGGG 57 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928,ENSRNOT00000008976 3 3 3 80 13 48128374 48134922 AGCTTTATTCGGTCATGAAGAC 59 48128315 48128335 TCTCTGCTTCCTTTAGTTTGC 59 NA Rattus norvegicus 81 RGD1561226 ENSRNOG00000048835 ENSRNOT00000040280 2 1 1 85 14 15724262 15725030 TGAATCAAGTCCTAGGGTGC 60 15725077 15725096 GGAATCCAAGTCGTTCTGTG 59 NA Rattus norvegicus 81 Btbd9 ENSRNOG00000000540 ENSRNOT00000000649 2 1 1 80 20 9195684 9195707 GTGATAGATCACTCACATTACCTG 59 9019848 9195647 TATTCGAATGTACCTGCAGAC 58 NA Rattus norvegicus 81 Tmem147 ENSRNOG00000021006 ENSRNOT00000028514 3 1 1 85 1 89178335 89178353 GACCTGTACCACACCTTCC 60 89178183 89178287 TGGACAAAGGTCTCCATGAC 60 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 1 1 1 69 14 115386444 115391515 AGCCTGGAAGAGTTGTGAC 60 115384909 115384929 GGTAGTTTGTAAGCAACACCC 60 NA DesignNoJunction Rattus norvegicus 81 Rbp4 ENSRNOG00000015518 ENSRNOT00000021055 1 1 1 80 1 256812973 256812991 AGACACAGAAGATCCTGCC 59 256808308 256812929 CAGTGGTCATCGTTTCCTC 58 NA Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 3 1 1 60 3 74544336 74544360 GATATACAGCCTTAGAAACAAGGAG 59 74544300 74544323 CTTTATAGGTAGCAGCTTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309995 ENSRNOG00000008331 ENSRNOT00000011326 1 1 1 80 7 26340039 26344598 CTCACCAAAGATGTGCAGTC 59 26339978 26340002 CTGCTCTTTAGATAACATAGACTCC 59 NA Rattus norvegicus 81 Slc39a14 ENSRNOG00000009832 ENSRNOT00000013067 3 1 1 80 15 51987526 51987544 CACTTCTCTGCAAACTGGA 58 51986136 51987483 CATCTCAGGGAACATATCGG 58 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416,ENSRNOT00000087118 3 2 2 80 10 10857695 10857714 ATGAGCCAGTGAAGACACTC 60 10857125 10857655 CTGTGTCATCTTTGTACCTCAC 59 NA Rattus norvegicus 81 Fancd2 ENSRNOG00000061085 ENSRNOT00000082618 2 1 1 80 4 145521256 145521959 AAGCCAGAAATCAATGTCTCC 59 145522001 145522019 CCGTTATGTTGTCTTGCCA 59 NA Rattus norvegicus 81 Cltc ENSRNOG00000004291 ENSRNOT00000005987 1 1 1 80 10 74025079 74025097 TCACCTTGGCGAGTATCAG 59 74024893 74025035 GCAAAGCAGACCTCTTTCC 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 3 2 2 80 X 123495226 123496117 CACCCTAACGTCTATGCAG 58 123496159 123496179 GGAAGACACATCATAGGTTGG 59 NA Rattus norvegicus 81 Pomc ENSRNOG00000012686 ENSRNOT00000016976 3 1 1 154 6 28386264 28386282 GACCTCCATAGACGTGTGG 60 28388145 28388163 TCAAGGGCTGTTCATCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rab7b ENSRNOG00000039754 ENSRNOT00000009280 1 1 1 80 13 48466182 48474081 TGGAAGATAGGAAGGTGCC 59 48474122 48474143 TCGCACTAACTTCAAAGTATGG 59 NA Rattus norvegicus 81 Rab7b ENSRNOG00000039754 ENSRNOT00000009280 2 1 1 80 13 48466180 48474080 TCTGGAAGATAGGAAGGTGC 59 48474120 48474141 GCACTAACTTCAAAGTATGGCA 59 NA Rattus norvegicus 81 LOC688613 ENSRNOG00000043197 ENSRNOT00000064487 3 1 1 68 7 123482572 123482591 ATGACAGATGCAGAGAACCC 60 123489568 123489586 AAACCAGTCCAGAAAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ces4a ENSRNOG00000014257 ENSRNOT00000019169 3 1 1 81 19 37105229 37105829 GCGATATCACCGAGATGCT 60 37105873 37105892 TCGAGGTTTGACAATGATGC 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000087940 1 1 2 95 15 70349978 70373802 CTGACAGATGATATGCTGGAC 58 70349903 70349921 AGACACAGTCTTCAGCTGG 59 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 3 1 1 81 16 6107006 6107024 GGCTGAAACTGAGAAGCAC 59 6107069 6107625 TCCTCGACATCGGTTTCTG 60 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 1 2 2 80 4 121649213 121649232 AATGAAATGTGGGCTTACGA 58 121649272 121649809 ATGGTTGTAAATACCTCACCAC 59 NA Rattus norvegicus 81 Alx1 ENSRNOG00000004390 ENSRNOT00000006007 1 1 1 80 7 44767509 44767531 CATTACCCGGATGTATATGTCAG 59 44764696 44767469 TTGAAACCAAACCTGGACC 58 NA Rattus norvegicus 81 Rnase3 ENSRNOG00000031445 ENSRNOT00000040857 1 1 1 65 15 28217591 28217609 TGATTTCCAGGACAGCCAG 60 28217384 28217562 AGACCCATGTTTCCCAGTG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 2 1 2 80 9 84412636 84418294 ATTGATCTACACTGTTGTTGGC 59 84418335 84418353 TGCAGCTCATCAATCTGCT 60 NA Rattus norvegicus 81 LOC687560 ENSRNOG00000050028 ENSRNOT00000071344 3 1 1 80 19 53471875 53472544 TCACAGAAGAAGGTAGCGA 58 53468981 53468999 GCCATACCATCTGCTTGAG 58 NA Rattus norvegicus 81 Ngb ENSRNOG00000011719 ENSRNOT00000016057,ENSRNOT00000081727 3 2 3 90 6 111128698 111128716 AGGACCTGTCTTCACTGGA 60 111127274 111128643 CACCTACTGTCGAGAAGGAG 59 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 3 2 2 86 14 18660373 18680877 TAGTGGCTGCAGGTATTCC 59 18660305 18660323 GTACGTAGTTGATGCCCAC 58 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 3 1 1 91 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476956 111480921 TCTCTTAGCTCACTCGATGC 59 NA Rattus norvegicus 81 Ctrl ENSRNOG00000019353 ENSRNOT00000026361 2 1 1 81 19 37906020 37906121 CTCCTCATGTCAGGGTGAC 60 37905957 37905978 CCAGGAGACAATACCAATAAGC 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 2 3 3 93 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671231 52675781 TAGTGCTCTTCTCGGTAACAC 60 NA Rattus norvegicus 81 Mei1 ENSRNOG00000007003 ENSRNOT00000009428 1 1 1 80 7 123310688 123314894 CCTCTGTATTGAAGTCCTTATCC 58 123314933 123314952 TGACACTCATTCAGTAGGCA 59 NA Rattus norvegicus 81 Gpbar1 ENSRNOG00000058260 ENSRNOT00000089698 2 1 1 60 9 81559773 81559792 CTACTAGCTGGGCTACTCAC 59 81559815 81559833 TCCTATTCCATAGCCCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc9 ENSRNOG00000006549 ENSRNOT00000008559 1 1 1 60 10 31324536 31324555 TCTTATACAGGAGCCATCGT 58 31324578 31324596 GGTAGTAGTCCTCCAAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc9 ENSRNOG00000006549 ENSRNOT00000008559 3 1 1 60 10 31324589 31324613 CTACTACCATATTATGTATAGGCCC 58 31324631 31324649 ATAGCGCAGATAGCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc4 ENSRNOG00000001816 ENSRNOT00000002487 3 1 1 80 11 81370755 81370774 CGTGGAATACAAGTAGTCCG 58 81370817 81371745 TGGTTTCCCATCTGAACGA 59 NA Rattus norvegicus 81 Pla2g15 ENSRNOG00000019859 ENSRNOT00000026996 1 1 1 80 19 38134082 38141688 CTGGATTGACAATATCAGGCTG 59 38141729 38141747 GGAACACGCACATCTACAC 59 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 3 2 2 80 20 29365566 29366420 GTTTGAGCAGGTTCAAAGC 58 29366464 29366482 GTGTTCCCAGTAGTTGGAC 58 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000065632,ENSRNOT00000077962 3 3 3 80 1 260575093 260577812 GAGTATGTGGAGACCGTGG 60 260575031 260575049 ATACACATCGTCAGCCTCC 59 NA Rattus norvegicus 81 Olr1378 ENSRNOG00000030412 ENSRNOT00000042582 2 1 1 60 10 12731392 12731414 CTCATAGCTCAACTCTCATTCTG 59 12731354 12731373 TCACATCACAGAAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r2 ENSRNOG00000001733 ENSRNOT00000002361 1 1 1 80 11 73022106 73022128 CATATCATCCAGCTGACAAAGAC 60 73022162 73025627 CATCACCTATCATATTGTGGTATGG 59 NA Rattus norvegicus 81 AC094212.1 ENSRNOG00000055222 ENSRNOT00000091773 2 1 1 73 8 26342525 26345544 AATTCAAGGAAGTTCTTCGTCG 59 26342473 26342491 CAGATGAGTTCTCCCAGGC 60 NA DesignRelaxed Rattus norvegicus 81 RGD1565904 ENSRNOG00000049116 ENSRNOT00000073735 1 1 1 80 11 83881065 83881168 AGACTTAGGTGACAAGTTCCG 60 83881005 83881025 GGGTTGTATTCACCATCATCC 59 NA Rattus norvegicus 81 LOC686900 ENSRNOG00000049864 ENSRNOT00000072638 2 1 1 60 3 77226268 77226289 CCACTCATCTTTACCTATGTCC 58 77226229 77226249 GAGCAAATACCTTGTCATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000001085 2 1 3 81 20 3399055 3399073 CTGGCTCCTTATCTTCAGC 58 3398693 3399012 CAGCACATGGTAATAAACCTG 57 NA Rattus norvegicus 81 Olr223 ENSRNOG00000019583 ENSRNOT00000026488 2 1 1 60 1 171027901 171027921 ATCTATGCAGTCTTCACTCCC 59 171027861 171027880 CTTCTTTGTTCCTCAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp512 ENSRNOG00000039815 ENSRNOT00000006658 1 1 1 80 6 26300685 26314107 TGGGAGCTAAGAATAACAGGA 58 26300625 26300644 TCAAGGAGTCTTCATGAGGG 59 NA Rattus norvegicus 81 Nfam1 ENSRNOG00000022975 ENSRNOT00000037681 1 1 1 80 7 123878294 123878313 AGGCACTTACTACTGCAGAG 59 123876951 123878251 TACCCTGTGTCTCTGACCA 60 NA Rattus norvegicus 81 LOC100909453 ENSRNOG00000048482 ENSRNOT00000041532 1 1 1 88 12 5132809 5132827 CCCTTATGGTCCAGTAGGT 58 5132879 5187799 ATACAGACCTGGGAGTCTC 58 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584,ENSRNOT00000000674 1 2 3 92 20 31268780 31268800 GATGTTCCAATTTACGCAGAC 58 31275564 31276863 GTCCTTTGTAGCAATCTCCA 58 NA Rattus norvegicus 81 Usp12 ENSRNOG00000033411 ENSRNOT00000044038 2 1 1 82 12 10085223 10085242 TTAACACTTCAGGAGACGCA 59 10085287 10086413 ATTGGGACCACTTCCACAG 60 NA Rattus norvegicus 81 AABR07029933.3 ENSRNOG00000056846 ENSRNOT00000087783 2 1 1 60 10 60503716 60503739 GTCTGTAGTATCACTGTTCTATGG 58 60503679 60503702 ATTACCTGCTGGACATAAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a6 ENSRNOG00000018215 ENSRNOT00000024757 2 1 1 80 1 224830495 224830633 TAATACCGAAGAGCCATACGA 59 224830675 224830693 TGCAGTTGAAAGAGGAAGC 58 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 3 2 2 81 4 78514247 78514265 TCCATTCTATGGCTGAGCA 59 78514310 78514630 ACAGCCAAAGGATACCTGG 59 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000034180 ENSRNOT00000046519 3 1 1 60 10 64336410 64336429 GCACCTAAAGATCGTCTACC 58 64336450 64336470 TTTAGGTGTTGTTCCTTCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem55b ENSRNOG00000009948 ENSRNOT00000013225 1 1 1 80 15 27854432 27854451 CTCTGAGTCCAGAACCACAG 60 27854211 27854391 TGAATTCTGTCCACAGAAACG 59 NA Rattus norvegicus 81 Mef2bnb ENSRNOG00000020427 ENSRNOT00000064090 3 1 1 90 16 21026974 21026992 CTTGCCAATGAGCCATCAG 59 21026422 21026920 GCATATCAGCCTTGTGCTG 59 NA Rattus norvegicus 81 Tril ENSRNOG00000026941 ENSRNOT00000036951 2 1 1 60 4 83972092 83972110 TGGATCTGCAGTACAACCA 59 83972050 83972068 CTGGAGAGCTTCTCGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckm ENSRNOG00000016837 ENSRNOT00000022895 2 1 1 80 1 80329244 80329262 TCTCCATGGAGAAAGGAGG 58 80329303 80330000 TGAAGATCTCCTCAATCTTCTG 57 NA Rattus norvegicus 81 Foxe3 ENSRNOG00000007770 ENSRNOT00000010208 1 1 1 69 5 133725426 133725444 TCTTATCGCTATGGCCCTG 59 133725375 133725393 GATGAAGCGGTAGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 1 2 2 84 3 3791477 3792895 CAAATACCAGTCCTCCAGGA 59 3792942 3792960 ATCCTCATCAGGCATGGTG 60 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 2 2 2 85 3 3791478 3792895 AAATACCAGTCCTCCAGGA 57 3792944 3792962 AAATCCTCATCAGGCATGG 58 NA Rattus norvegicus 81 Ggt7 ENSRNOG00000018441 ENSRNOT00000025315 3 1 1 82 3 151012318 151012336 TTCTCAACAGCCAGATGCT 59 151011551 151012272 CTGTACCGAGTTCTCCAGG 59 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000038006,ENSRNOT00000088884 3 2 2 82 13 90067142 90067160 GCAGAGATTCACATTGCGT 59 90065405 90067096 CTTGACAGGTGCTCATGGA 60 NA Rattus norvegicus 81 Armc6 ENSRNOG00000020280 ENSRNOT00000027550 3 1 1 80 16 20945054 20945074 AACATTGTGAAGACAGTACCG 59 20945115 20948878 ATCATTGAGAGCCTGTAGGA 58 NA Rattus norvegicus 81 Pigw ENSRNOG00000027857 ENSRNOT00000029769 3 1 1 60 10 72195526 72195544 AAATGCTAACCGAGAGGGA 58 72195484 72195503 ACCAGCCATGTATATTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 1 1 1 60 10 86565315 86565333 CTGCAGATCCAAGTGAACC 59 86565357 86565375 CTTCCTGTAGGGCACAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox18 ENSRNOG00000003052 ENSRNOT00000004074 1 1 1 80 14 19435126 19436366 TTACATCCTTGCTAAGGTGGA 59 19436408 19436426 CAGACTGCAACTTCTTGGT 58 NA Rattus norvegicus 81 LOC502176 ENSRNOG00000030321 ENSRNOT00000045098 2 1 1 80 18 60748574 60767090 TTTCTTATTTCCTCCGCCTC 58 60767132 60767151 GAGTTCATAGATGGCGATCC 58 NA Rattus norvegicus 81 LOC502176 ENSRNOG00000030321 ENSRNOT00000045098 3 1 1 81 18 60745193 60748505 CAACAAGGCAGGCTTTACAG 60 60748548 60748567 GTGGTGTTTGTCTTTCTGGG 59 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509,ENSRNOT00000078050 1 3 3 94 6 122763601 122764880 ATTTCACCTTGCAAAGCCT 58 122764937 122764956 GCTTTAGTACACTTTGCGTC 58 NA Rattus norvegicus 81 LOC100364634 ENSRNOG00000049529 ENSRNOT00000039088 2 1 1 60 1 66774526 66774544 TTTCCAACACTCAGTCCCT 59 66774484 66774504 AGCAACAGTGAGAAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc4 ENSRNOG00000046599 ENSRNOT00000065472 1 1 1 60 19 54652215 54652235 AGATGGAGAAGAAAGTGTCCA 59 54652025 54652043 GTAAACGAGGAGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1560513 ENSRNOG00000033673 ENSRNOT00000052326 3 1 1 62 4 132296113 132296134 CGGGTCTACATCAACTATTACG 59 132296072 132296090 AAAGGTGGAACTGTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450,ENSRNOT00000028780 1 2 2 80 2 198434469 198434487 CATCTATCACTGCTCAGCC 58 198432382 198434426 GTGGCAAATAGCTCTTTCAC 58 NA Rattus norvegicus 81 Cxxc1 ENSRNOG00000014614 ENSRNOT00000020472 1 1 1 80 18 70196363 70196381 CAGATTCCACGAGCTTGAG 58 70196423 70196518 TCATTCTCATTGTTCTCCTCG 58 NA Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000079750,ENSRNOT00000039998 1 2 2 60 20 3689765 3689783 AAACCTCCTGGCTCTTCTG 59 3689723 3689741 CTAACCTGGCTCCAAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc1 ENSRNOG00000003951 ENSRNOT00000005329 1 1 1 80 6 124133264 124135312 ACATCAAGGCAATCTGCAC 59 124135353 124135374 TCTTGAAGTCTTCGTTTGTCAC 59 NA Rattus norvegicus 81 Smco2 ENSRNOG00000026883 ENSRNOT00000034051 1 1 1 80 4 181249185 181252426 CTAAGAAATGGGATGGGTTGG 59 181252466 181252486 GAGTTACTTCTCGCTCATCCT 59 NA Rattus norvegicus 81 Tob2 ENSRNOG00000050500 ENSRNOT00000071998 3 1 1 256 7 123088214 123088232 GAATCACATGAGCTCGGTC 58 123081541 123081559 ACTTTGATCTCCAGCTGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 3 2 2 80 2 198704290 198704310 ACCATTATCCTTCCCAAGAGG 59 198704124 198704254 CTTCTCTAGAGTCTCTAGTTTCTGG 60 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000078153 2 1 3 105 1 100599242 100601337 AACCAACAGGGCAGTAGAC 60 100601406 100601424 GTCTTCTGGAGACATGGCT 59 NA Rattus norvegicus 81 Tfap4 ENSRNOG00000005227 ENSRNOT00000006979 1 1 1 91 10 11215981 11216359 TTATCCAGGAGCTGAGTGG 59 11216414 11216432 CTCATCCTCCCAGATGTCG 59 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 1 2 2 109 16 21347326 21347344 TTCTTCTTTGTGCGCAGAC 59 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 2 2 2 110 16 21347326 21347345 TTTCTTCTTTGTGCGCAGAC 60 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360997 ENSRNOG00000033801 ENSRNOT00000047082 1 1 1 90 15 29341809 29341827 TTTCACTGGTGGTCCTGTG 60 29341189 29341207 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100360997 ENSRNOG00000033801 ENSRNOT00000047082 3 1 1 92 15 29341809 29341827 TTTCACTGGTGGTCCTGTG 60 29341187 29341205 CTCCCTCTGGAACAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 2 3 7 80 9 43625918 43625936 GAGCCAATGGTTGTGAGAG 59 43625977 43632707 GTAAATGGCTTCAATGGTTTCG 59 NA Rattus norvegicus 81 PVR ENSRNOG00000019202 ENSRNOT00000064305 1 1 1 80 1 80828807 80831011 CTTTCCCTACCTTATCCACC 57 80828746 80828764 CAGGTTCACGTTAGTGAGG 58 NA Rattus norvegicus 81 Vegp2 ENSRNOG00000033020 ENSRNOT00000041399 3 1 1 80 3 4220747 4221202 GAGAATCAGGATGTGTCAGGA 59 4220687 4220708 AGATCCAAACTTCTTGTCAGGA 60 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 3 1 1 115 8 40071215 40071234 GCTTCTATAACAACCACGCA 59 40067254 40069303 AGTAGACTCCTCGAAGGGA 59 NA Rattus norvegicus 81 Ifitm3 ENSRNOG00000015078 ENSRNOT00000020265 3 1 1 82 1 213811572 213811590 GTCCCTGTTCAATACGCTC 58 213811002 213811526 TCCGATCCCTAGACTTCAC 58 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 1 2 2 82 8 50223421 50223762 GTTTATGAAGAAAGCCCAGGA 58 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 2 2 2 82 8 50223420 50223762 GTTTATGAAGAAAGCCCAGGAG 59 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Plau ENSRNOG00000010516 ENSRNOT00000014273 1 1 1 80 15 3649717 3649887 GCTTCTGATGAATCAAACTGTG 58 3649658 3649676 GCATCTTCGAATGCTGGAG 59 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 2 2 2 80 X 110733045 110733862 CATCAGAAACACTTCAGAACG 58 110733901 110733922 TCCCTCTTTCATGATAATGACC 58 NA Rattus norvegicus 81 Ankrd49 ENSRNOG00000009233 ENSRNOT00000012583 1 1 1 80 8 13301310 13302313 AAGAATCGGCTTGCTACAG 58 13301248 13301270 GGTATATTCATCTTCGTCTCTGG 58 NA Rattus norvegicus 81 P2ry12 ENSRNOG00000013902 ENSRNOT00000018600 1 1 1 93 2 149442722 149444437 ATAACCAGGACCATGGAGG 59 149442647 149442665 TGTAGTCTCTGCTGCACAG 59 NA InUTR Rattus norvegicus 81 Trap1 ENSRNOG00000005418 ENSRNOT00000008966 2 1 1 80 10 11752193 11752530 CAGAAACAGACTGAGGTGC 59 11752574 11752592 CTTCTTGTCAAACTCCCGC 59 NA Rattus norvegicus 81 Tmem236 ENSRNOG00000037982 ENSRNOT00000057785 2 1 1 81 17 81305462 81305480 GTTCTGTTGTCCCTGATCG 58 81305522 81341424 TTTCATAACCCATTTGACTCCC 59 NA Rattus norvegicus 81 Cldn12 ENSRNOG00000039862 ENSRNOT00000061199 2 1 1 138 4 25686410 25686428 AGGCTGTTTGGAGAAACAC 58 25689207 25689225 GAAGAGGCCTGCTACAGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017656.1 ENSRNOG00000047226 ENSRNOT00000073230 2 1 1 80 15 29712400 29712595 GATTTGCTGGGTGAGAGGA 59 29712338 29712359 CTCAGAGAAGAATTGGTTCCCT 60 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 1 2 2 80 12 8116099 8116118 AAAGATCCAGGTACTCCAGC 59 8114418 8116058 GACAGTTGTCTGGTAACAACC 59 NA Rattus norvegicus 81 Aes ENSRNOG00000052025 ENSRNOT00000092061 1 1 1 80 7 11014737 11015288 GGCATTACGTCATGTACTATGAG 59 11014526 11014546 TCAGCCTCTTCACAATTTCAG 59 NA Rattus norvegicus 81 Emc6 ENSRNOG00000019352 ENSRNOT00000026168 2 1 1 60 10 59742817 59742836 TCATCTTCTACCTGCTTGCC 60 59742776 59742796 CTTCCCGCTTTGAGAATTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna4 ENSRNOG00000010768 ENSRNOT00000014384 2 1 1 80 2 165702747 165702854 GACAATTCAGGAGATTCTTCCA 58 165700375 165700393 GCCCAGACAGTATCTACCA 58 NA Rattus norvegicus 81 Dhx32 ENSRNOG00000018119 ENSRNOT00000024655 3 1 1 80 1 205810522 205816353 CATCCTGAGGTACTGTACCG 59 205810461 205810481 ATGATGACACCATAGCTACCC 60 NA Rattus norvegicus 81 Fen1 ENSRNOG00000020531 ENSRNOT00000027842 1 1 1 96 1 226253444 226255659 TAGGAAGAAGCCATTGCTC 57 226253366 226253384 ATGTCATTCTCACGGATGG 57 NA InUTR Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 1 1 1 91 2 243106073 243106091 TCTAGGACAACAAGCCACG 60 243106146 243106507 AACTCAAGTACCTCTGCGG 59 NA Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 3 1 1 94 2 243106072 243106090 ATCTAGGACAACAAGCCAC 57 243106148 243106509 CCAACTCAAGTACCTCTGC 58 NA Rattus norvegicus 81 AC095263.1 ENSRNOG00000054374 ENSRNOT00000078918 3 1 1 81 20 7140682 7140700 GTATAGCTATGACCCGGCA 59 7140514 7140638 ATGAACCACCTTAGGGTCTC 59 NA Rattus norvegicus 81 Clstn1 ENSRNOG00000016398 ENSRNOT00000045063 3 1 1 80 5 166598102 166598122 GAAGTTCAAGCTCATTTGCTC 58 166598163 166599136 GTGTGGATCACATTCACCTC 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 1 3 3 85 9 12476114 12476132 AGTGTCAATTCGAGAGGGA 58 12476181 12477188 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902,ENSRNOT00000080950 2 2 2 80 6 124363431 124370669 ACCTTACCAATCCCAGTGAC 60 124363370 124363389 TTGTGTTAAGCTGTCGTCTG 59 NA Rattus norvegicus 81 LOC100910807 ENSRNOG00000028899 ENSRNOT00000049424 2 1 1 102 X 124393486 124393504 TCACTTGAACCAGGAAGCA 59 124393570 124395697 TTTCTACTCTCCATGCCGG 59 NA InUTR Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 2 1 1 96 3 176088306 176088324 TTCAGCCAGAATATTGGGC 58 176088384 176089246 GAATCTCAGACTCGTGCAG 58 NA Rattus norvegicus 81 Tekt4 ENSRNOG00000018792 ENSRNOT00000025434 1 1 1 80 10 14832759 14832778 CCCAAACTCGACTTTACCAG 59 14832821 14833556 CGCTCATCAACCTGAACTG 59 NA Rattus norvegicus 81 Olr80 ENSRNOG00000015769 ENSRNOT00000021115 2 1 1 81 1 168283727 168283846 CAGGTCTCCATTTCACCCT 59 168283664 168283684 AGGAAATCCAATCCAGATGTG 58 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 3 2 2 80 2 195751946 195751966 CATTAAAGCGGAGGAGAAGTC 59 195744622 195751908 CTTAGCATGTTGAGGTACATGAC 60 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 1 2 2 80 19 55403429 55404126 CACATCATAGACAGGCCCA 59 55403367 55403385 GAGGTGTGCTTTGTACTGG 59 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196,ENSRNOT00000083812 3 2 2 80 3 148462231 148469037 GATCATGAAACCTGTCGCC 59 148469080 148469099 TTCCTCCAGTCCATGATGTC 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185,ENSRNOT00000085291 1 2 2 80 5 163053571 163053591 CAGGAGGAAGTCTCTTAACTG 58 163048181 163053532 CAGTGTGGCTTATTTCTTTGTC 58 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000071104 1 1 2 80 12 35971281 35971301 CAAAGGCAGATTGAACTGGA 59 35971216 35971234 GGTTGGCCTTTGTATTCCC 59 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000058492 2 1 2 81 12 36313967 36313987 TGAGTGAACTCTTCGTCTCTG 60 36269516 36313925 ACTTCTGTGTCCATGGTGAG 60 NA Rattus norvegicus 81 Olr657 ENSRNOG00000045624 ENSRNOT00000043928 1 1 1 60 3 77389292 77389313 GTTTCTCAACAACTGTAGCTCC 60 77389253 77389271 ATAGAAGCCTCCTTCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218,ENSRNOT00000051075 3 3 3 83 7 71071179 71071661 GAACTACCTGGCATCTTATCTG 59 71071705 71071723 ATGCAGTCAGTCACCAGAG 59 NA Rattus norvegicus 81 Bmp8b ENSRNOG00000033209 ENSRNOT00000050949 2 1 1 80 5 140818129 140818595 ACCTAGGAATCTTTGATGATGG 58 140818636 140818654 CACGGAAGCTGACATACAG 58 NA Rattus norvegicus 81 Foxk2 ENSRNOG00000036663 ENSRNOT00000054919 3 1 1 83 10 110500090 110505772 GCTGGCAGAATTCAATCCG 60 110505819 110505837 CTTTGCCTGGTTCTTCCTG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000088130 1 1 6 81 20 3559077 3559097 CCTATAGTTTAAGCCTGCCCT 59 3559140 3562542 ACAGCATCTCCAAGGTAGC 60 NA InUTR Rattus norvegicus 81 AABR07034730.3 ENSRNOG00000057165 ENSRNOT00000038646 1 1 1 80 11 85508359 85508501 CCTTCATCACTTAACAGGGTC 59 85508543 85508561 ACTGTGCTTCCTAGAGACG 59 NA Rattus norvegicus 81 Crx ENSRNOG00000013890 ENSRNOT00000018858 2 1 1 80 1 77748321 77748339 GTACCCGGATGTGTATGCA 60 77745922 77748278 TTCTTGAACCAGACCTGGAC 60 NA Rattus norvegicus 81 Vcsa2 ENSRNOG00000001945 ENSRNOT00000002667 2 1 1 81 14 21559006 21612298 TAGTATGCTTCCCGTCAGG 59 21558943 21558964 AGAGTTGAAAGATCTTGTGGTC 58 NA Rattus norvegicus 81 Wdr90 ENSRNOG00000020006 ENSRNOT00000027121 3 1 1 80 10 15228015 15228033 TCAGACACTTCAGGATGGA 58 15227852 15227971 TCTTCAAGACCTTGTCCGT 59 NA Rattus norvegicus 81 Nob1 ENSRNOG00000021890 ENSRNOT00000034386 2 1 1 80 19 38405348 38406176 GCTGTTTCAAGACAACATCG 58 38406218 38406237 TCACAGACACTTTCTTCAGG 58 NA Rattus norvegicus 81 Cpsf4 ENSRNOG00000000985 ENSRNOT00000042474 2 1 1 80 12 11200807 11203682 CACTTGCTACAAGTGTGGT 58 11200745 11200763 CACTGTCCACTGAGAAAGG 58 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000076609 3 1 2 96 2 184309489 184309507 ATGAGGAGCAGATGAATCG 57 184309318 184309430 GAAGAGTCCTCATCATTCCG 58 NA Rattus norvegicus 81 LOC100362391 ENSRNOG00000048888 ENSRNOT00000073768 2 1 1 60 4 102426447 102426466 TGTTTGTGGTAGCTTTAGGG 58 102426487 102426507 TGCTTCTTACACTCATTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rnf141 ENSRNOG00000017900 ENSRNOT00000024561 1 1 1 80 1 175647004 175650546 GCTGAACTCAATGATGTAACTG 58 175646945 175646963 ATCAGACCCAGGTTGTACC 59 NA Rattus norvegicus 81 Cyb5a ENSRNOG00000015205 ENSRNOT00000020446 3 1 1 80 18 81724793 81726469 GTCTAATTCCAGTTGGTGGAC 59 81726508 81726529 ATGTAGAGGCGATACATCAGAG 59 NA Rattus norvegicus 81 Rn60_18_0532.1 ENSRNOG00000043100 ENSRNOT00000055675 3 1 1 60 18 53905410 53905429 CAGGTCATCTTTCCAGTCAG 58 53905450 53905470 CACCAACCTCTAGTACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000021918,ENSRNOT00000090779 3 2 2 120 17 78826767 78829140 CAAGTTGCCATGGTAGACC 59 78829224 78829242 CTTTGTGGACCTCCTTGTC 58 NA Rattus norvegicus 81 Fscn2 ENSRNOG00000036700 ENSRNOT00000054975 2 1 1 87 10 109534472 109538568 TGAGGCAAGGAATCAATGTC 58 109538618 109538636 TTCTTTGTCTCCTGGTCGA 58 NA Rattus norvegicus 81 Pcdhb9 ENSRNOG00000020072 ENSRNOT00000027188 3 1 1 60 18 30476250 30476270 CATCTTCAGAGTTGGAGACAG 58 30476292 30476310 TGAGATAGAGCAAACCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563780 ENSRNOG00000050432 ENSRNOT00000066220 2 1 1 83 15 31867768 31867955 GATTTGCTGGGTGAGAGGA 59 31868001 31868020 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Pglyrp1 ENSRNOG00000013395 ENSRNOT00000018233 1 1 1 89 1 79791071 79791089 AGACTCCTGTGAACAGCAG 59 79791141 79794935 CCAATGAGGAAGTTGTAGGC 59 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639,ENSRNOT00000022060 3 2 2 81 1 151439677 151630856 TACTTCTGGGCAGTGATGG 59 151630900 151630919 ATTGTAATTCCACCGACAGC 59 NA Rattus norvegicus 81 Mical3 ENSRNOG00000053203 ENSRNOT00000082982 1 1 1 80 4 153552569 153552589 ACTACTGTTACCGACTGTCTG 59 153551648 153552527 GTCCTTTGGCTTCCTTTCC 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 1 2 2 80 3 13247870 13270129 CATCACAGTATCACAGGTATCC 58 13247811 13247829 TCCTCTTGAAATTTGCCGA 57 NA Rattus norvegicus 81 AABR07017841.1 ENSRNOG00000048670 ENSRNOT00000072744 1 1 1 62 15 31770000 31770018 CTTTCAGCTCCATTTGCCT 58 31770227 31770245 TTGAAGCCTGAGTTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Ift27 ENSRNOG00000006440 ENSRNOT00000008450 3 1 1 80 7 119393635 119398563 CTTTGAGACATCTGTGAAGGAG 59 119393576 119393595 CGATACAGCTGGTAGAACTG 58 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586,ENSRNOT00000018556 1 2 2 80 1 15906114 15913138 TTGCCAAAGGAAATGACACAG 60 15906054 15906075 CTCATTCTGTCTGTTGATGTCC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793,ENSRNOT00000083088 2 7 8 114 6 64852803 64852824 AACAAGGGTGGTAAATATCCAG 58 64854383 64861609 GATCTTCTGCATCACTATATTCTCC 59 NA Rattus norvegicus 81 Olr325 ENSRNOG00000021071 ENSRNOT00000028605 2 1 1 60 1 228546017 228546035 AACACTGTCATCACACCCA 59 228545975 228545995 TCATTTCTTGGTTCCTGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000085170 3 1 3 83 X 123988491 123988512 AGGAATCACTATCTCAGTGCTG 60 123888234 123963879 AAACCATCTCTGCACTTTGG 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 3 2 2 86 19 563180 563298 ACATTTGGGAACAGGATGG 58 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000079069,ENSRNOT00000083012 1 4 5 91 1 15845063 15845084 CTTGAAGATGAGCTGACTTCTC 59 15845136 15845988 CTGATGAAGCCAGTCTCCC 60 NA Rattus norvegicus 81 Shmt1 ENSRNOG00000005275 ENSRNOT00000007092 2 1 1 80 10 47036943 47037967 TATTCTACAGAAAGGGTGTGC 58 47036883 47036901 AGTTGATGAGGGACTCCAG 58 NA Rattus norvegicus 81 Mir6322 ENSRNOG00000047842 ENSRNOT00000072595 3 1 1 60 12 26825112 26825130 GGTCTGTACGCATCTTTCC 58 26825070 26825089 AAGACAGAGACCTGTGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292,ENSRNOT00000016340 1 2 2 80 11 69834615 69837668 AGGAACAATAGTAAGAGGGATGG 60 69837706 69837726 AATGGATATGGTATCGGGCTG 60 NA Rattus norvegicus 81 Arrb1 ENSRNOG00000030404 ENSRNOT00000043554 2 1 1 80 1 164567021 164568261 GAGCTTGACACCAATGATGAC 60 164568302 164568321 GTCCTTGTCATCCTTCATGC 59 NA Rattus norvegicus 81 LOC682489 ENSRNOG00000037960 ENSRNOT00000057735 2 1 1 95 13 98728874 98772765 GGGATTGGGAACATTCGTC 59 98728797 98728815 ATATTCAGCCAGAAGACGC 58 NA Rattus norvegicus 81 LOC100909879 ENSRNOG00000032580 ENSRNOT00000048046 1 1 1 80 2 87418865 87419514 TTTGTGTATGCAGGAGCAG 58 87419557 87419576 TGATTCTCCAGCATCAACAG 58 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000050805 ENSRNOT00000039280 3 1 1 85 12 22010033 22016823 TGATGACGACAGTGGTTCC 60 22009628 22009646 ACATGAGGTGGGACTTCAC 59 NA Rattus norvegicus 81 Rhbdl3 ENSRNOG00000005515 ENSRNOT00000007312 2 1 1 89 10 67711876 67723695 ATTGTCATGAACTGGTCAGG 58 67729116 67729134 TCTCCCGAACTCCATACTC 58 NA Rattus norvegicus 81 Pcdhga11 ENSRNOG00000027232 ENSRNOT00000026969 2 1 1 60 18 30905541 30905561 TGTCACCTCTTCCATCAACTC 60 30905581 30905601 AAGAGCAATTACTGTACCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1619 ENSRNOG00000048856 ENSRNOT00000046317 2 1 1 60 15 27347051 27347073 CTTCTTCTCCTTTGGTTCTACAG 59 27347091 27347111 GTAGCGATCAAATGCCATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctrb1 ENSRNOG00000019068 ENSRNOT00000026017 2 1 1 81 19 43906984 43907907 AATACAATGCCCTCAAGACC 58 43906922 43906940 CAGGACTTCTTGCAGTCAG 58 NA Rattus norvegicus 81 Mllt4 ENSRNOG00000023753 ENSRNOT00000032667 2 1 1 80 1 53777436 53780278 ACTTACGAAGATGGCTCTG 57 53777374 53777392 CTCTGTCCCAACTTCAGTC 58 NA Rattus norvegicus 81 Cdk2ap1 ENSRNOG00000001070 ENSRNOT00000001419 2 1 1 89 12 37672703 37672721 CTACTAGCATGGCGACCTC 60 37672773 37674163 TATTTCCAGTTCCCTGGGTG 59 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 3 1 1 70 4 49372164 49372182 AAAGCAAAGTCCTGCTAGC 59 49372216 49378970 CATTAACTTGGCGACAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000038780,ENSRNOT00000005995,ENSRNOT00000085680 2 4 4 98 7 28417724 28468710 TTACTTCAACAAGCCCACAG 59 28468771 28468789 CTCCTCAGATCACAGCTCC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000038780,ENSRNOT00000005995,ENSRNOT00000085680 3 4 4 99 7 28417723 28468710 TTTACTTCAACAAGCCCACAG 59 28468771 28468789 CTCCTCAGATCACAGCTCC 59 NA Rattus norvegicus 81 Olr634 ENSRNOG00000045745 ENSRNOT00000047382 1 1 1 60 3 76768250 76768270 TGGACATTTGCTATACCTCCT 59 76768291 76768310 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr634 ENSRNOG00000045745 ENSRNOT00000047382 3 1 1 60 3 76768121 76768140 TTTGCTTCCTGTTCTTCTCC 58 76768161 76768181 AGGATCATCAGATTCCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm12 ENSRNOG00000049913 ENSRNOT00000026700 1 1 1 60 3 152178410 152178431 CTACCTACTGGAATGAATGGCT 60 152178371 152178394 CAGGGTTCAGATTATTGTTCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb13 ENSRNOG00000020062 ENSRNOT00000027172 2 1 1 60 18 30517000 30517019 TTATCCTCACTCAACAGCCC 60 30517039 30517060 TGAATACTGCCACTATGATACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpe ENSRNOG00000009339 ENSRNOT00000034565 2 1 1 80 2 240447048 240447070 GAAGAAGTGATAAGGCTACTGAG 59 240447107 240450057 GTCTTGTTCTGAGAGCATTGAG 59 NA Rattus norvegicus 81 RGD1560730 ENSRNOG00000014266 ENSRNOT00000019103 2 1 1 116 1 104001077 104009817 GGAGGGAAGGAACACTAGTG 60 104000980 104001001 TGAAACTCGATGGAACAAAGTG 60 NA Rattus norvegicus 81 LOC100912217 ENSRNOG00000047847 ENSRNOT00000073864 1 1 1 81 1 173013086 173013105 CAAATCCAGGTACTCACCAG 58 173013147 173015460 AAGTGGATTATTCAGCAGAGG 58 NA Rattus norvegicus 81 LOC100912217 ENSRNOG00000047847 ENSRNOT00000073864 2 1 1 82 1 173013086 173013105 CAAATCCAGGTACTCACCAG 58 173013147 173015461 TAAGTGGATTATTCAGCAGAGG 58 NA Rattus norvegicus 81 LOC100911372 ENSRNOG00000007663 ENSRNOT00000010383 2 1 1 81 5 105212089 105212110 CTTCGTACGTTCTATGAGAAGC 59 105211686 105212047 GGACCACATAACCCTTCCA 59 NA Rattus norvegicus 81 Zfpm1 ENSRNOG00000043077 ENSRNOT00000068452 3 1 1 81 19 55118789 55121066 CCACCCAGAGAAGATGTGAG 60 55121110 55121128 CTTGTCCCTCCACATCCTC 60 NA Rattus norvegicus 81 Cant1 ENSRNOG00000003239 ENSRNOT00000066303 2 1 1 81 10 107436909 107436929 ATCTACCAGATCGAAGGTACC 59 107435008 107436866 CTTTGAAGCCCTTCTCCAC 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317,ENSRNOT00000083855 1 2 3 89 8 111773206 111773224 AAGAAAGTCCTTCCTGCAG 57 111770200 111773155 TTTATTGGCTGAGATATCCCG 58 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 3 2 2 81 3 113936773 113936793 AATAGGAAACCTGCTCTTCCT 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 1 1 2 60 8 11997802 12160125 TAGTTAACCTTGGTCCCGC 59 12160149 12160167 AGAAATGAGCTGTCAGGGA 58 NA DesignNoJunction Rattus norvegicus 81 Olr639 ENSRNOG00000052168 ENSRNOT00000087552 1 1 1 60 3 76890991 76891011 TGGACATTTGCTATACCTCCT 59 76891032 76891051 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apol2 ENSRNOG00000048451 ENSRNOT00000074293 3 1 1 94 7 118729484 118732293 TGAGTTGTCCAGAGCTGAC 59 118729408 118729426 CATGTTGGAGCCTGTTCTG 59 NA Rattus norvegicus 81 LOC100363112 ENSRNOG00000033429 ENSRNOT00000046977 2 1 1 81 3 119354955 119354973 AACTCAATCTGCTCACCGA 59 119355015 119376028 GTGAAGTTCCATTTCCTACACC 59 NA Rattus norvegicus 81 Pld6 ENSRNOG00000021657 ENSRNOT00000033483 1 1 1 81 10 46143236 46145127 GCAAGGCAGGTATACAGGT 60 46143173 46143191 AGCACCTTCTTGTCAACGA 60 NA Rattus norvegicus 81 Pld6 ENSRNOG00000021657 ENSRNOT00000033483 3 1 1 87 10 46143236 46145127 GCAAGGCAGGTATACAGGT 60 46143167 46143186 GTGATGAGCACCTTCTTGTC 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 3 1 1 63 14 21819576 21820860 TGCCAGTGATGAGTTACCT 58 21819531 21819549 GTATCCACCAAATGGAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000087115 1 1 3 90 4 158637986 158703960 CTGCCACGATCTTACAGGT 60 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 1 2 2 80 10 86880072 86880232 TACACTACGAACAACAGCTC 58 86880275 86880293 CTTGGTGGAGAGTTCACTG 58 NA Rattus norvegicus 81 Rhbdl1 ENSRNOG00000019921 ENSRNOT00000026971 3 1 1 80 10 15203078 15203097 CTGGTACTTCTACAGGCACC 60 15202942 15203035 AGGAACACGATGATCTGGG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000075969,ENSRNOT00000063902 1 2 4 85 13 80429848 80429866 GGGAATGAGTTGTCCTCCC 60 80428615 80429803 TAAAGATACCTTCACGAGACAGG 60 NA Rattus norvegicus 81 Muc5b ENSRNOG00000019846 ENSRNOT00000028967 1 1 1 80 1 214809038 214809057 GTGCTGAGAATGGAGTTCAC 59 214809099 214809260 TCCTTAGGATTCCCGTACAG 58 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000085901 1 1 3 96 9 81562790 81563016 TCCTCCCTGATGGAAAGAG 58 81562712 81562731 CCTTTCAGTACATGGATGGG 58 NA Rattus norvegicus 81 Psors1c2 ENSRNOG00000048579 ENSRNOT00000074958 2 1 1 139 20 3728160 3728762 TATTTGCAGGAGGCATCTC 57 3728039 3728058 CTCATCAAACAGAGGAGGTG 58 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 2 2 2 80 12 47957905 47958014 CTCAACCTGTTCAAGACAACC 60 47957845 47957864 CTGCAGGTAGTTCTCATGGA 59 NA Rattus norvegicus 81 Cenpt ENSRNOG00000024178 ENSRNOT00000036702 2 1 1 80 19 37817985 37819619 GAGCACTCAGACGAATCCA 60 37817923 37817942 GTACTCGTCTTTCTCTGGCT 59 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000046006 ENSRNOT00000059593 1 1 1 80 12 22005807 22005829 CCGTAGTCAATTCAGTTTCTACG 60 22001038 22005771 TCATAGAAGACTTCCACCTACAC 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060250 1 1 10 80 15 32832039 32832060 TTGATAGAGGTTCAGCTCTAGG 59 32832101 32852790 CTGGGTCTGTGACATCAGG 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000073853 1 1 10 80 15 32817412 32852782 TCTGTCAAGCCAAATGTCAC 59 32852824 32852843 GCAGAGGGTGATGTTATCAG 58 NA Rattus norvegicus 81 Prima1 ENSRNOG00000008915 ENSRNOT00000011906 1 1 1 82 6 127078926 127083806 CCATAAAGAGGAAACCACTGAG 59 127078865 127078883 TTTGTTACTCGGCGAGGAG 60 NA Rattus norvegicus 81 Ddx23 ENSRNOG00000060154 ENSRNOT00000089612 2 1 1 80 7 140331176 140331197 GAGAACAGTCACGTTTCTATGG 59 140331021 140331135 GGAGTCTTGCTTCCTCCTG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848,ENSRNOT00000049681 3 2 2 80 1 140799926 140800993 CTGCTACACAGGTGAAGAC 58 140801037 140801055 GTCTGGATGGTGATGTCCT 59 NA Rattus norvegicus 81 Bcl6 ENSRNOG00000001843 ENSRNOT00000002522 3 1 1 92 11 80275638 80275656 TGTGAAATCTGTGGTACCC 57 80275712 80277866 CTTCTCACAATGGTACGGT 57 NA Rattus norvegicus 81 Tesl ENSRNOG00000033628 ENSRNOT00000044165 1 1 1 90 X 121054599 121066743 CTGAAAGCAGATGGACTTAGG 59 121054529 121054548 AAAGTGTAGCTCAAACCCTG 58 NA InUTR Rattus norvegicus 81 LOC100362356 ENSRNOG00000030188 ENSRNOT00000040783 3 1 1 81 8 37126234 37126254 GGAAGTTTGACATATTGCCAG 58 37125907 37126192 AGGTTTAACCCTGTGTAACG 58 NA Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 1 1 1 161 8 116764640 116764658 TGACAGTTTCCTGAGCCAG 60 116763868 116763886 CAGACAGAGTCCTCTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 2 1 1 162 8 116764641 116764659 TTGACAGTTTCCTGAGCCA 59 116763868 116763886 CAGACAGAGTCCTCTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 1 2 2 80 8 71490064 71492291 GTATCACAGCAGACTAGATGAG 58 71490005 71490024 GATCTATCAGACGTGACCAG 57 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 2 2 2 80 8 71495856 71495875 TCGAATGAAGTCTGGTTTGG 58 71492484 71495814 GTCCTTCGGATACTAGTCCT 58 NA Rattus norvegicus 81 Ccdc94 ENSRNOG00000047456 ENSRNOT00000072357 1 1 1 80 9 11105850 11107188 CCATTCAACATGAGGTGTAAGAC 60 11105792 11105811 CTGGACTGTTTCCTTTCGTG 59 NA Rattus norvegicus 81 Sgsh ENSRNOG00000049552 ENSRNOT00000070934 3 1 1 80 10 108471344 108473029 TGGATCAAGGGATAGGATTGG 59 108471284 108471303 CGGATGTGAAGATGATGAGG 58 NA Rattus norvegicus 81 Rpl31l4 ENSRNOG00000039249 ENSRNOT00000045401 1 1 1 60 12 19159542 19159560 ACTTACGTGCCTGTTACCA 59 19159500 19159521 GTTAGTTCTCATCCACATTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500877 ENSRNOG00000029292 ENSRNOT00000043257 2 1 1 80 7 101134610 101134629 GGAGTCTACAATGGGAAGGT 59 101123634 101134568 ACTTGCAAATATCCTGAGGC 58 NA Rattus norvegicus 81 Tekt3 ENSRNOG00000027212 ENSRNOT00000038276 1 1 1 80 10 49496088 49499028 TCACTTATCGAAGACCCTGC 60 49499071 49499089 GACTTCTCCTTGATGGCCT 59 NA Rattus norvegicus 81 Gad2 ENSRNOG00000018200 ENSRNOT00000024901 3 1 1 80 17 89185357 89197826 ATTCACGTCAGAGCATAGTC 58 89197869 89197887 ATCAGAATCACGCTGTCTG 58 NA Rattus norvegicus 81 Atxn3 ENSRNOG00000005470 ENSRNOT00000007505 1 1 1 80 6 125824586 125824606 CCTGGATACCTTTCATACCCA 59 125821617 125824544 CATAGCATTGCCTGCTTGG 60 NA Rattus norvegicus 81 Cadps2 ENSRNOG00000007636 ENSRNOT00000068404 3 1 1 80 4 50578070 50578090 TCAAAGTGAAGCTCTTCACAG 59 50555430 50578028 TTGGGTATAACACCACCCT 58 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934,ENSRNOT00000064686 1 2 2 60 18 55871901 55871919 GAGACTTTGTCAACAGCCC 59 55871859 55871881 GAGTAGAATAAGAGGGAGGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 2 1 1 88 7 7534402 7534423 GGACTCTCACTTAAAGACTCCT 59 7534329 7534351 CAAATCTGGGAATGGAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.2 ENSRNOG00000048049 ENSRNOT00000054858 2 1 1 80 1 215303281 215305730 GAATGAGACAAGAGATGTGCT 58 215303221 215303239 GCAAACTCTTTAAGGCCGA 59 NA Rattus norvegicus 81 Mllt3 ENSRNOG00000011280 ENSRNOT00000015094 1 1 1 80 5 106109689 106111001 GTGAATGTGACAAGGCTTACC 60 106109629 106109648 GCAGAATGTGTCTTTCCCTC 59 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259,ENSRNOT00000086539 1 2 2 80 5 120430721 120430741 CTGAAGGACAACTTGAAAGAC 57 120430783 120431929 GTCTCCCTTTGTGTAGCTG 58 NA Rattus norvegicus 81 Ces2j ENSRNOG00000029744 ENSRNOT00000061734 1 1 1 80 19 492544 492630 GTGCATAGTATCATTGATCTTCGG 60 492723 492744 ATGATATGATAAAGGCCCAGGA 59 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725,ENSRNOT00000057989 1 2 2 80 4 100434991 100437387 CTTCCAGGGAGCAAATCCA 60 100434929 100434947 TCCATGACCAGGTACAGGA 60 NA Rattus norvegicus 81 Duox2 ENSRNOG00000017395 ENSRNOT00000023939 3 1 1 80 3 114234633 114235126 GCTCTTCTTTGGCTATCACG 59 114234572 114234592 TAAATGTTGAGGAACTCTGCG 59 NA Rattus norvegicus 81 Hs3st3a1 ENSRNOG00000024591 ENSRNOT00000033737 3 1 1 60 10 50928374 50928393 CAGGAAGTTCTTGCTGATGC 60 50928414 50928434 CAGGCAGTAGAAGACGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cby1 ENSRNOG00000013892 ENSRNOT00000018787 3 1 1 80 7 120896381 120896402 TATGGAACTCCTACCATGAACC 59 120896441 120896539 ACTAATCACTGAGTCTGCCAC 60 NA Rattus norvegicus 81 Klhl33 ENSRNOG00000025868 ENSRNOT00000032992 2 1 1 81 15 27814282 27814389 AACTCTCAGGTGGAGTTCC 59 27814219 27814237 CACCAAAGGGAAGAAGCTC 59 NA Rattus norvegicus 81 Olr621 ENSRNOG00000047515 ENSRNOT00000044856 2 1 1 60 3 77309511 77309530 TATGACGCAGATCTTTGCAG 59 77309550 77309571 GAGAATAAGCACAAAGATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495,ENSRNOT00000032112 3 3 3 80 4 158420159 158420180 GAGAAACTGCTAAAGGAGAGTG 59 158420219 158497416 TTCATCATCCTCATCGTCCTC 60 NA Rattus norvegicus 81 Ctsd ENSRNOG00000020206 ENSRNOT00000027407 3 1 1 80 1 215551032 215551052 AGTACTCCATGCAGTCATCTC 59 215549093 215550991 CATAGTACTGGGCATCCAGG 60 NA Rattus norvegicus 81 Cox7b ENSRNOG00000054689 ENSRNOT00000090007 1 1 1 80 X 77065515 77069156 AAGTCGTCTCCAAGTTCGA 59 77069198 77069218 TTGTCATGGAAAGTAGGTGTC 58 NA Rattus norvegicus 81 Rpusd4 ENSRNOG00000011567 ENSRNOT00000015670 2 1 1 104 8 36474697 36474715 ACATCAGCTCCGAGTTCAC 60 36474782 36476304 CCAGCAGAAAGTTTCTGAGG 59 NA Rattus norvegicus 81 Npr1 ENSRNOG00000014684 ENSRNOT00000020307 2 1 1 80 2 189848105 189848127 TAGAGAATGAGAGTATCACCCTG 59 189847950 189848068 GTAGAAAGAGCATTCCCTTGAC 59 NA Rattus norvegicus 81 LOC680097 ENSRNOG00000050933 ENSRNOT00000072286 3 1 1 61 17 43821380 43821399 CATCTCCGGTCTCATCTACG 60 43821338 43821356 TCACGTTCTCCAGGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069386.1 ENSRNOG00000046689 ENSRNOT00000075473 3 1 1 80 8 20565883 20565904 CATTCTCTGGACTGTTCCTG 58 20565947 20565965 AATTAGAGCTGACAGCCAG 57 NA Rattus norvegicus 81 Tcea3 ENSRNOG00000011794 ENSRNOT00000015776 1 1 1 80 5 154630042 154633457 TTGTACCTATAACCAGGTGC 57 154633500 154633518 CGATTCCCACATTCATTGC 58 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 1 1 1 98 12 13354975 13354993 CTTTGGAGGAGTGGGAGAG 59 13355054 13355499 TTGGGTATCCCAAGGAAACC 60 NA Rattus norvegicus 81 Amtn ENSRNOG00000003776 ENSRNOT00000065778 3 1 1 81 14 21294233 21295804 GACCTGCCATTGTTCAACC 60 21294170 21294188 GTTGTCCATTCAGTGGTCC 59 NA Rattus norvegicus 81 RGD1559909 ENSRNOG00000042421 ENSRNOT00000065105 1 1 1 60 5 142844427 142844445 TCTGTATCCACCAGAGGTG 58 142844385 142844403 ATCAAGACTCTGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559909 ENSRNOG00000042421 ENSRNOT00000065105 2 1 1 61 5 142844427 142844446 ATCTGTATCCACCAGAGGTG 59 142844385 142844403 ATCAAGACTCTGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cebpe ENSRNOG00000014282 ENSRNOT00000019155 1 1 1 247 15 33357142 33357160 GTGAAAGAGGAGCCTCGAG 60 33356360 33356378 TTGTTCACTGCCTTCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000078543 1 1 8 130 3 100787465 100787486 CACTCTGTGTAGTTTCATTGTG 58 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000078543 3 1 8 160 3 100787465 100787486 CACTCTGTGTAGTTTCATTGTG 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000080190 3 1 8 135 3 100787162 100787183 CTGCCTTGATGTTTACTTTGAC 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chst7 ENSRNOG00000004258 ENSRNOT00000005630 3 1 1 87 X 2655607 2655625 GAGACACCACTGGAAACCA 60 2623711 2655559 TAACCACTGACCTAGATATGCC 59 NA InUTR Rattus norvegicus 81 Sdc1 ENSRNOG00000059947 ENSRNOT00000086633 1 1 1 80 6 33905138 33905158 CTGTCATCAAAGAGGTTGTGG 59 33905198 33905677 AGGTGAAGTCTTGTTCTCCAG 60 NA Rattus norvegicus 81 Ccdc181 ENSRNOG00000002860 ENSRNOT00000003844 3 1 1 80 13 82587151 82587169 AGCTGAGAAAGCAAGAGGA 59 82587211 82588313 TTCTGAGCCATTGTCTAAAGG 58 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 3 2 2 80 12 15980290 15980308 GGACCTCTGTCCTATCTGC 59 15977434 15980247 GTGTGCAGTCTCTTGTACCT 60 NA Rattus norvegicus 81 Pcdhb17 ENSRNOG00000039471 ENSRNOT00000040998 1 1 1 60 18 30564480 30564499 TCTTAAAGCCAGTTCTGCCT 59 30564519 30564540 TTTCCCTCTATTTCTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp182 ENSRNOG00000047132 ENSRNOT00000073016 1 1 1 84 X 985273 985293 TCTCATTATCAAGCTGGAGGT 59 985339 998022 AACTTGGCAGACTTCTGGA 59 NA Rattus norvegicus 81 Rsu1 ENSRNOG00000017595 ENSRNOT00000057827 3 1 1 80 17 80529475 80576908 TGGACAGTTGGAATTCACG 58 80529413 80529431 ACCTCAAGGTTCTTCAGCT 59 NA Rattus norvegicus 81 Olr693 ENSRNOG00000006408 ENSRNOT00000008384 1 1 1 60 3 78105497 78105516 GTGCTACCATTGTTGAACCA 59 78105456 78105476 ACTTCTGCATTCCTCAAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777,ENSRNOT00000051362 2 2 2 80 18 1307686 1307705 ACTTACGGAAAGCAAGTCAG 58 1307537 1307645 CATTCGCTTCTTCTAACTGCT 59 NA Rattus norvegicus 81 Zbtb8a ENSRNOG00000008300 ENSRNOT00000010983 2 1 1 80 5 147565809 147565829 CTGAAGTGGATCCTGTTTCTG 59 147564221 147565767 GCAGATTGTCTGGAAAGCT 58 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000077172 2 2 4 112 7 117712144 117719216 GTGTACCAGTGTACTAATGGTC 58 117712053 117712071 ATCTCACAACGACAGTTGG 58 NA Rattus norvegicus 81 Mir107 ENSRNOG00000035639 ENSRNOT00000053762 1 1 1 60 1 253128303 253128324 TAAGCTTCTTTACAGTGTTGCC 59 253128264 253128283 GATAGCCCTGTACAATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx49 ENSRNOG00000022368 ENSRNOT00000004891 2 1 1 80 16 20878603 20879370 ATGATGAAGCAGAAAGAGCG 59 20879409 20879431 CACGTCAGTAGCAATAAGAATCC 60 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 2 2 2 80 12 17513532 17513550 CCAGACTGTTGACACTCAC 58 17512017 17513490 CTTCTCTGTTTGACTGTCCTG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 1 7 12 92 20 3352065 3352083 CTAAAGGACACCTCAGCCC 60 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000090225 3 1 12 60 20 3364215 3364235 TAACACATGCTTCATCTCCCT 59 3364255 3364275 CTGTAACAAGACCTGATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049405.1 ENSRNOG00000037974 ENSRNOT00000057772 1 1 1 80 5 120869829 120869847 TATCTCATCGGCACACTCC 59 120869888 120869910 GGTTTGGAATGCCAGATATCAC 60 NA Rattus norvegicus 81 Kcne4 ENSRNOG00000048478 ENSRNOT00000072242 1 1 1 117 9 84689186 84689764 ACTGTCAGCCTTTGATCCC 60 84689845 84689863 AGACACATGGGACTCAAGG 59 NA InUTR Rattus norvegicus 81 Cxcl17 ENSRNOG00000037814 ENSRNOT00000057433 3 1 1 85 1 82269992 82270778 ACTGCAAAGATTGGTCCCT 59 82269925 82269943 ATGATCACAGGGACACTGC 60 NA Rattus norvegicus 81 Zfp503 ENSRNOG00000014237 ENSRNOT00000019644 3 1 1 98 15 2375290 2375309 TACACCCAGAGTATCTGCAG 59 2376058 2376076 AACATGTTTGAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075932 2 1 4 99 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208576669 208576687 GGTGACACTTACCCTGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Xrn2 ENSRNOG00000011785 ENSRNOT00000016351 1 1 1 80 3 141245323 141245345 GATGAACTTGCAGATAGTCTTCC 59 141245383 141245485 TTCCAGATACTCTCGAAGGAC 59 NA Rattus norvegicus 81 Actg1 ENSRNOG00000036701 ENSRNOT00000054976 3 1 1 98 10 109519264 109519393 GAAGATTAAGATCATTGCTCCTCC 60 109519189 109519207 CTGATCCACATCTGCTGGA 59 NA Rattus norvegicus 81 Asic5 ENSRNOG00000011842 ENSRNOT00000016039 3 1 1 80 2 180949364 180950268 CAACTGAAGACCATCCACC 58 180950311 180950330 GCTGTAGGTGGTAAAGTTCC 58 NA Rattus norvegicus 81 Scamp4 ENSRNOG00000018271 ENSRNOT00000024980 3 1 1 112 7 11972753 11972771 CCATTGGGTTCTTTGGGAC 59 11970850 11972680 CCTGTGTACCTTCACAATAGTG 59 NA Rattus norvegicus 81 LOC100909476 ENSRNOG00000009166 ENSRNOT00000012256 1 1 1 81 6 127302676 127304074 GAAGAAGAGATGTACAAAGGAGG 59 127302617 127302638 CCTGCTTCAGAATCTTCATCTG 59 NA Rattus norvegicus 81 Prkaa2 ENSRNOG00000007706 ENSRNOT00000010680 2 1 1 80 5 124591777 124593406 AGATAGCTGACTTCGGACTC 59 124591716 124591735 CTGCATAATTTGGCGATCCA 59 NA Rattus norvegicus 81 Ube2q1 ENSRNOG00000020791 ENSRNOT00000028210 3 1 1 80 2 189112915 189113124 AAACTCCTCAAAGTTGACCA 57 189113167 189113185 GATGAAGTCTGCTCCTTCC 58 NA Rattus norvegicus 81 AABR07065353.1 ENSRNOG00000037891 ENSRNOT00000057577 2 1 1 80 6 123362004 123362022 CTAGAGCCTCACACTTGTG 58 123362066 123376546 AATAATCTTGGTGCTGGGC 58 NA Rattus norvegicus 81 AABR07017868.2 ENSRNOG00000050388 ENSRNOT00000073686 3 1 1 80 15 31989080 31989284 ATTTGTCTTGCAACCAGCA 59 31989328 31989346 TGTCACAGTCTTCGTCTCC 59 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 2 2 2 80 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298255 167298274 CAGTAGCTGTGAACTTCTGC 59 NA Rattus norvegicus 81 Vim ENSRNOG00000018087 ENSRNOT00000024430 1 1 1 80 17 80890021 80890040 TCACTTCCTCTGGTTGACAC 60 80890082 80890852 ATTGATCACCTGTCCGTCTC 60 NA Rattus norvegicus 81 Olr305 ENSRNOG00000052972 ENSRNOT00000089511 2 1 1 60 1 213169687 213169707 CATGGACATTATCTGCACCTC 59 213169728 213169747 CTCAGACAGTAGACCAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r96 ENSRNOG00000058628 ENSRNOT00000080669 3 1 1 60 4 121871005 121871023 GCCTGTCTACTGCATATCC 58 121871044 121871065 TTGTTAAACAGGAGCTTCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1640 ENSRNOG00000048857 ENSRNOT00000047436 2 1 1 60 15 28806180 28806198 TCTGAAACTAGCCTGTGCC 60 28806138 28806156 TCCGATGTCCACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr35 ENSRNOG00000028783 ENSRNOT00000051970 3 1 1 80 6 34143866 34145562 AGTTACTTCCAGAAATAGCCCA 59 34145603 34145621 GGTTACACTTCAGGAACGC 59 NA Rattus norvegicus 81 Ipo7 ENSRNOG00000010427 ENSRNOT00000014002 1 1 1 80 1 174693474 174694148 GAAGAGCAGCACATGAATCC 59 174694190 174694209 TGAAAGAACTTGGCACAACC 59 NA Rattus norvegicus 81 LOC100912042 ENSRNOG00000047187 ENSRNOT00000075095 1 1 1 80 3 4875566 4876039 TAAACTCAGGAAGAAGGAGC 57 4876081 4876100 AAGGAACTGAAGTTCTTGGG 58 NA Rattus norvegicus 81 Tecrl ENSRNOG00000001912 ENSRNOT00000002621 2 1 1 80 14 26677040 26697185 AAGTTTCACAAAGCATGTCC 57 26700296 26700314 ATCCTTCAAGTACGGACCA 58 NA Rattus norvegicus 81 AABR07017830.1 ENSRNOG00000046356 ENSRNOT00000071642 3 1 1 105 15 31579511 31579647 CTCCTCATCCTCACAAGGG 59 31579716 31579734 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 1 2 2 84 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723699 TGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537,ENSRNOT00000055333 1 2 2 80 10 86685831 86686144 AATGTTCTGCTGGCATGTC 59 86685769 86685788 GAAGTCTTCCCAGATCTCCT 58 NA Rattus norvegicus 81 Ac1576 ENSRNOG00000058372 ENSRNOT00000078646 2 1 1 85 10 71343970 71344838 AAAGAAACTAATGAGGCGCG 59 71343904 71343922 TCATCACACTGAAGGGTCC 59 NA Rattus norvegicus 81 Olr515 ENSRNOG00000032722 ENSRNOT00000050404 2 1 1 60 3 73988963 73988986 GGTGTTGACAAGATTCCATTAGAG 60 73989002 73989023 AGCCCAAGAGTATAAACATCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgprb5 ENSRNOG00000022703 ENSRNOT00000029958 2 1 1 60 1 103545685 103545706 CAATCCCATCATTTACTTCCTC 57 103545727 103545745 ACTCTGCCTTTGTAACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000076099 1 1 3 80 9 94513060 94513078 GAGTGTCAGTTCCACTGGT 59 94513122 94518050 TAAAGGGACCTTGGACCTC 58 NA Rattus norvegicus 81 RGD1563782 ENSRNOG00000042711 ENSRNOT00000063878 2 1 1 82 11 86918848 86918951 ATTACTGAGGTGTGGGACG 59 86918784 86918802 CTTTGACGACCTACCAGGA 59 NA Rattus norvegicus 81 Vom1r82 ENSRNOG00000060630 ENSRNOT00000073173 2 1 1 60 4 88120503 88120521 TGAAGAAAGAGCCACCCAG 60 88120540 88120563 CCAGTACATGACTACAAAGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962,ENSRNOT00000021258 3 2 2 82 9 112008386 112008404 GCTTTCATGTTGGATGGGA 58 112005780 112008340 TCAAATAGGCTCCAGTCCA 58 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 3 2 2 80 10 37047126 37047145 GGTGTGGATCTGATCAAGGA 59 37047188 37048074 TTCCTTTAGCCTGGAGACC 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 1 2 2 80 1 227498801 227503798 ACAGTTCTTGGGACTATCCAG 59 227498741 227498759 GGAGTAGGAAGCTGACACC 60 NA Rattus norvegicus 81 Homer2 ENSRNOG00000061450 ENSRNOT00000087785 2 1 1 80 1 143475752 143475772 CACTGTTTCCTACTTCTACGA 57 143463604 143475713 CTGTTTATGATTACCTTGGCTC 57 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000087084 1 2 3 96 10 105094844 105094862 TCTGGACTGTCCAGAAAGC 59 105094929 105094949 AGACTGGCCTTAAACTCCG 59 NA InUTR Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 2 2 2 81 7 124001705 124001723 ATGACATTGTAGCACCCGT 59 124000080 124001660 CTCATTCCAGTCGTGTGGT 60 NA Rattus norvegicus 81 LOC100912370 ENSRNOG00000049711 ENSRNOT00000071385 3 1 1 60 3 77825713 77825731 GACCCACTTCTGCATTCTC 58 77825671 77825692 GGTGTAACAGCATTCATAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sephs2 ENSRNOG00000048397 ENSRNOT00000074114 3 1 1 134 1 198721090 198721108 GGAGTTTCTCCAACTACCG 58 198720971 198720989 GTCCCTCCAGGAGTTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Bahd1 ENSRNOG00000010428 ENSRNOT00000013878 3 1 1 80 3 110727888 110727906 CAGGTCCAAGAAAGACGTC 58 110727948 110728386 TCATCAGTTCTCCTGACTCAG 59 NA Rattus norvegicus 81 AABR07042361.1 ENSRNOG00000052690 ENSRNOT00000072808 1 1 1 60 X 153678194 153678215 CTTCACCAACAGAATACAAGAG 57 153678233 153678254 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 1 2 3 80 X 72513543 72514993 TCCTGTGCCATCAGAATCC 60 72513481 72513500 ACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 Lrtomt ENSRNOG00000023434 ENSRNOT00000039564 1 1 1 80 1 166987834 166987854 ATCCTCACAACTCTAGACCAC 59 166987081 166987798 CATCAGAATCTGACCTTTAATAGGG 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 2 2 2 80 3 148169774 148169794 GAGTTTGACACTAAGGACCTG 58 148169833 148169945 AATCCAATGCTTCCTTAGAAGG 59 NA Rattus norvegicus 81 Pih1d1 ENSRNOG00000020634 ENSRNOT00000028022 1 1 1 80 1 101155228 101155334 ACCTGAGGATGCAGAACAG 59 101155377 101155396 GGCCATACTTGTCTTCAAGG 59 NA Rattus norvegicus 81 Tigd2 ENSRNOG00000038449 ENSRNOT00000058581 3 1 1 60 4 89538130 89538149 AACAGGATGACATGCTACTC 57 89538170 89538190 CTTATAATGGTCCGAAGCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0880.2 ENSRNOG00000051363 ENSRNOT00000076743 1 1 1 60 13 83034251 83034269 AGGCTTCACAGCCTATGAG 59 83034209 83034229 CTTGTCCTTGGACACTTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 1 2 2 118 7 11436250 11436268 TGCGAGAAGGTGATTCAGG 60 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 2 2 2 120 7 11436251 11436269 TTGCGAGAAGGTGATTCAG 58 11433454 11436167 CTTCAGCTTGTCCTGTCTG 58 NA Rattus norvegicus 81 AABR07005416.2 ENSRNOG00000048649 ENSRNOT00000072650 2 1 1 60 1 182843038 182843058 CTACGAGAAAGATCCAGTCCT 59 182843075 182843098 GTTACCTTCTGTGTAATCATCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560831 ENSRNOG00000007605 ENSRNOT00000009988 3 1 1 60 3 52998308 52998326 CTCTTAGGAGGGCTTGCAG 60 52998266 52998287 TTTCCATAATGAACCGAAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Derl1 ENSRNOG00000005551 ENSRNOT00000007484 2 1 1 80 7 97746002 97746483 CCATGGATATGCAGTTGCT 58 97745940 97745959 CAATCAGGTCTCTGTTCAGC 59 NA Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 2 1 1 91 X 14635107 14635452 TACAACATCTGATGGCACC 58 14635034 14635055 GTTATAGGACAATTGCTACTGC 57 NA Rattus norvegicus 81 Cse1l ENSRNOG00000007665 ENSRNOT00000010210 3 1 1 80 3 163695040 163695060 GCTGTTGTGAACTTTGAGGAG 60 163695100 163695243 GTATGGGATGAACTCTTGCAC 59 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 1 1 1 80 13 82456371 82456389 CCTGGGATCTCGAAATGTG 58 82456431 82457542 AGTGATGTTACACCTTTGCAG 59 NA Rattus norvegicus 81 Sfpq ENSRNOG00000058461 ENSRNOT00000084202 2 1 1 80 5 145085574 145085675 ATGAACATGGGAGATCCCT 58 145085718 145085737 AGCTTCATAACCTATGCCAC 58 NA Rattus norvegicus 81 S100a13 ENSRNOG00000012393 ENSRNOT00000016519 1 1 1 80 2 189907100 189912289 ATTTGCTCAAGGATGTGGG 58 189912333 189912351 CATTGAACTTCAGCTCCGA 58 NA Rattus norvegicus 81 Rn60_10_0631.1 ENSRNOG00000043259 ENSRNOT00000065209 2 1 1 60 10 63320432 63320450 CGAGACCTTCAACCAAGTG 59 63320473 63320492 GAACTTACCTAGGTAGTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 3 2 2 81 5 133766381 133786200 CGCATTGTTGAGAAATATGGC 59 133766320 133766340 ACTGTGAATCTGGATTCTTCC 58 NA Rattus norvegicus 81 Actl7b ENSRNOG00000016621 ENSRNOT00000022291 3 1 1 60 5 73493270 73493288 CTCATGCAGCTACTCAACG 59 73493228 73493247 CTATAATGTGCAGGTGGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC362901 ENSRNOG00000031383 ENSRNOT00000040687 2 1 1 80 7 75565048 75565067 TCCAAATCTGCAGGATCTCC 60 75559708 75565011 CATTTAGTAGGTTATAAGGTGTGGG 59 NA Rattus norvegicus 81 Lima1 ENSRNOG00000059801 ENSRNOT00000091702 3 1 1 81 7 141452372 141452390 CAAATGGGAGCAGAAGGAG 58 141445533 141452327 AGTTGCAGAAACCTTGCTC 59 NA Rattus norvegicus 81 LOC291543 ENSRNOG00000023960 ENSRNOT00000039569 1 1 1 80 18 60835514 60835553 AAGGCTGAGAATTTCAAGCTG 59 60835454 60835473 CCATTTGATGTTAGCGGGAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 3 3 3 80 19 9774075 9774301 GTGGGTCTCAATCACAAGC 59 9774013 9774031 CACCACGAAGTGTTTGGTG 60 NA Rattus norvegicus 81 Sntb2 ENSRNOG00000020344 ENSRNOT00000027561 3 1 1 80 19 39194950 39194968 ATGACTGTATGCCGTGGAC 60 39195012 39199497 AATGAACCAACCTTGTGGC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 3 2 2 82 1 100229678 100229696 CCCTCGATACCATGAGCTG 60 100229538 100229632 TCAAGAAGTCTGTCCAGCC 59 NA Rattus norvegicus 81 Tmem81 ENSRNOG00000028752 ENSRNOT00000035335 2 1 1 99 13 49277767 49277787 GTCCTGGTTCACTTAGAAGAG 58 49277848 49278665 CTTAAACCCACAGGCTTCC 59 NA InUTR Rattus norvegicus 81 LOC686411 ENSRNOG00000049738 ENSRNOT00000072579 2 1 1 97 1 225628506 225631413 GCTATGAAACTAATGCTGGC 57 225628428 225628446 CTCAAGTTCCTTCCTCAGG 57 NA Rattus norvegicus 81 LOC102552732 ENSRNOG00000023397 ENSRNOT00000031916 1 1 1 80 14 22870894 22870912 AACTGCTCAACAGCTACCT 59 22869118 22870851 TCTTACAGAGCCCTCTACAG 58 NA Rattus norvegicus 81 Vom1r9 ENSRNOG00000054409 ENSRNOT00000079558 1 1 1 60 1 60249071 60249090 CCATCATGCCAAGAAACTCC 59 60249107 60249131 CTAATGTCCATTGTAGACTTGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060979.1 ENSRNOG00000030177 ENSRNOT00000048263 2 1 1 85 4 102124173 102124572 TCTGGATCCAGGAAACCAG 59 102124106 102124124 GATGGAGACTGACTGTCCA 58 NA Rattus norvegicus 81 RT1-T24-4 ENSRNOG00000042905 ENSRNOT00000047439 1 1 1 80 20 3196336 3196354 CTGTGGCCATTATTGGAGC 59 3196397 3196593 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Ffar4 ENSRNOG00000021763 ENSRNOT00000034563 3 1 1 108 1 256786640 256786658 CTGCTGGCTTTCATATGGG 59 256786729 256796427 AAATCGGAATTTCCTGGTCC 58 NA Rattus norvegicus 81 Olr663 ENSRNOG00000047879 ENSRNOT00000049513 3 1 1 60 3 77525180 77525200 GCAGCAGTAGAAGTGATTGTC 59 77525140 77525159 TGCAAATGGCTACATAACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852,ENSRNOT00000029046 3 2 2 81 X 70372222 70373119 CTCACAGTCAAGATGGTAGG 58 70373161 70373181 TTTACTGGGAAGTAGCTTTGG 58 NA Rattus norvegicus 81 Tll1 ENSRNOG00000033528 ENSRNOT00000065642 3 1 1 80 16 27594622 27594643 TGTTGAAGTCTTTGATGGTCTC 59 27594683 27596057 TAGATTTCTTCTGGTGGCCC 60 NA Rattus norvegicus 81 Vps72 ENSRNOG00000021081 ENSRNOT00000028625 3 1 1 80 2 196278156 196284102 CTTCACTGAGGAGTCTGGA 58 196284143 196284164 ATGTCAAAGTCAGAGTCTACCT 59 NA Rattus norvegicus 81 Myh7 ENSRNOG00000016983 ENSRNOT00000024186 2 1 1 80 15 33635445 33636621 TCACCTACCAGACAGAGGA 59 33635383 33635402 CCTTCACCTTTAACTGCAGC 60 NA Rattus norvegicus 81 Bloc1s6 ENSRNOG00000037160 ENSRNOT00000056083 1 1 1 144 3 114876145 114878164 ATGCTTTGTTCACGGAAGC 60 114878649 114878668 CTCTCCAGCTCCTCTTTCTG 60 NA Rattus norvegicus 81 Bloc1s6 ENSRNOG00000037160 ENSRNOT00000056083 3 1 1 147 3 114876141 114878161 ATCAATGCTTTGTTCACGGA 59 114878649 114878667 TCTCCAGCTCCTCTTTCTG 58 NA Rattus norvegicus 81 Psmb11 ENSRNOG00000047091 ENSRNOT00000073767 3 1 1 60 15 33271254 33271272 ACGAAAGGTCATCCCTGTG 60 33271296 33271314 GTCAGCAGAGGTTCCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000085124,ENSRNOT00000019265 1 4 9 60 9 81548478 81548496 AGGAGGAAGCACTGTTGAC 60 81548519 81548538 TGAAGGGCTACGATTATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp541 ENSRNOG00000021800 ENSRNOT00000058241 2 1 1 80 1 77986173 77986193 TGAGAATGTAGCTTCTCTGGT 59 77986235 77986553 AGTTCCATCACTCTGTCCT 58 NA Rattus norvegicus 81 LOC103690304 ENSRNOG00000053992 ENSRNOT00000082085 1 1 1 60 15 27652919 27652937 CTTCCTGGCAGTAATGGCT 60 27652877 27652895 AGGGTAATGTAATGGGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359766 ENSRNOG00000049553 ENSRNOT00000074483 3 1 1 92 15 29623449 29623562 CTTTCTCATGAGAGTTGCCC 59 29623376 29623394 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Sycp3 ENSRNOG00000005270 ENSRNOT00000007088 3 1 1 82 7 29034263 29034739 ATTGAAGATGTGGGAGGTG 57 29037103 29037121 TTCTTCTTGGCCAGAAGAG 57 NA Rattus norvegicus 81 Pgm1 ENSRNOG00000009889 ENSRNOT00000013785 3 1 1 81 5 118776122 118776142 ACTTGAAGGTAGACCTCAGTG 59 118776185 118777487 ACGATCTCCACTGTGAAGG 59 NA Rattus norvegicus 81 Bdkrb1 ENSRNOG00000004488 ENSRNOT00000005953 3 1 1 154 6 129438235 129439358 TTTCTATCCGGACCACAGC 60 129439476 129439494 GTCTTCTAGGGCACTCTCG 59 NA InUTR Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 2 4 4 80 10 18571047 18571819 AAGTTCGAGGACTTTGTGAC 58 18570986 18571006 CAAATTAAACGTCCACCTCAG 58 NA Rattus norvegicus 81 Eda ENSRNOG00000032208 ENSRNOT00000076977 3 1 1 60 X 69730768 69730786 CCAGGAGAAGATCCACTCC 59 69730810 70131328 AATTCAGGAGTGCCATCTG 58 NA DesignRelaxed Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 3 1 1 60 13 49935400 49935421 ACTTTCTGGAGAAAGATACACC 58 49935439 49937884 AACTTCTTCAAGGAAGGTTACC 58 NA DesignNoJunction Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000078180 2 1 2 120 15 28733452 28733470 TTGTGTCCTAACCCATCCC 59 28732974 28733368 CCTCACTAGCATCACCTCC 59 NA InUTR Rattus norvegicus 81 Grm7 ENSRNOG00000005662 ENSRNOT00000056570 3 1 1 80 4 143086153 143086172 GACAACAAACACAACCAACC 58 143086213 143187915 TGCATGTCCTCTATATTGAGC 58 NA Rattus norvegicus 81 Nlrp4a ENSRNOG00000042030 ENSRNOT00000043739 1 1 1 80 1 69336242 69369634 CTTAGAGGATCTTGGGTTGGA 59 69336182 69336204 CTACACTGGGTAAATGTAGAAGC 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 1 2 2 80 14 83139921 83139941 CAGAACCTTCCATAAGGTGAC 59 83139387 83139882 GCAGATTCATAAGGGTACTTGG 59 NA Rattus norvegicus 81 Slc35d1 ENSRNOG00000022967 ENSRNOT00000032126 1 1 1 80 5 122743357 122743375 GCCCATGTTTACAGTCCTG 59 122742533 122743318 GAGAAAGTCTTCTTAAGTAGAGCG 59 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000038257 2 1 2 90 19 57651010 57651028 CTATGAAGGGAGAGGAGGC 59 57651081 57653039 GTGGTAGACCTCTACAAGGT 58 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000048060 ENSRNOT00000075558 1 1 1 60 5 144634224 144634244 CTCCAACCAGACAGTAATTCC 59 144634264 144634284 GCCAGTTCTTATTAGCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017694.1 ENSRNOG00000047938 ENSRNOT00000074419 3 1 1 105 15 30174047 30174160 TTCTCCTAAGAGTTGCCCA 58 30173960 30173978 CCAGGTGTGGAATACTTGC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000087669,ENSRNOT00000080820 3 3 4 80 1 63844682 63844703 AATATCGCTGCTACTGTTACAG 59 63844743 63844888 AGTAGATTCCTGTCACCACC 59 NA Rattus norvegicus 81 Mlc1 ENSRNOG00000032871 ENSRNOT00000055879 2 1 1 80 7 129958280 129958728 GTCCTAAAGTCCTATTCTGTGG 58 129958221 129958242 CTCTACATTTAGAGCGATCACC 59 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000024077,ENSRNOT00000085395 1 2 2 80 1 170262336 170262354 TCTCAACAGCAGTAGTGCC 60 170262397 170269735 GCCATCTCCAATTCTCTGGT 60 NA Rattus norvegicus 81 Ormdl3 ENSRNOG00000030445 ENSRNOT00000049621 2 1 1 80 10 86547463 86547787 ATTGTGCTGTACTTCCTCAC 58 86547402 86547420 ACTCATCAAGGACACAGTG 57 NA Rattus norvegicus 81 Ufd1l ENSRNOG00000047394 ENSRNOT00000071493 1 1 1 80 11 86305665 86310098 GGTTGAAGAGGATGAAGCTG 59 86305604 86305622 GGCTTTCTTCCCTTCTTCC 58 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656,ENSRNOT00000080829 3 2 2 80 6 126487122 126487141 CATCAGGACCCTGTTAGACC 60 126470389 126487085 CAGATCCTGTCATCTTTCATATAGG 59 NA Rattus norvegicus 81 Slc22a18 ENSRNOG00000020562 ENSRNOT00000027925 2 1 1 80 1 216678303 216678324 CATCATACTCACCTATGTGCTG 59 216678362 216681481 CGAGACAGATATGGTATGATGG 58 NA Rattus norvegicus 81 Clec4a3 ENSRNOG00000010018 ENSRNOT00000013308 2 1 1 80 4 155915378 155916294 GGAAGAGCAGGATTTCCTG 58 155915316 155915334 TGTCGATGACCTGGATCTG 59 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 2 2 2 80 9 113587793 113587814 AGATTATGGGAAGTACAGAGGA 58 113584945 113587753 CTTGGTCTCACACTCTTGTC 58 NA Rattus norvegicus 81 Hist1h2ba ENSRNOG00000016865 ENSRNOT00000022630 2 1 1 60 17 43423194 43423213 GGGTTCAAGAAAGCAGTCAC 60 43423236 43423254 GGCATCTCTTACGTTTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb3 ENSRNOG00000027836 ENSRNOT00000058860 1 1 1 167 2 118874813 118874832 GCATAAGCAATGGAGATCCC 59 118870406 118874683 CTTCTCTGGGAGAGCTGAG 59 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000018291 ENSRNOT00000024691 3 1 1 90 8 16329668 16333387 ATTACTTGGCATGACAGCC 58 16333441 16333459 GTAGGCCAGGTACAAAGAC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421,ENSRNOT00000085708 1 2 2 80 6 23231004 23233639 TTTGCTCCAGGGTATTGGT 59 23230942 23230960 ATACTGCACACCTCCAACC 60 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273,ENSRNOT00000004078 2 2 2 80 13 50120948 50120966 CCCAAGAAGGAGAAGTCGG 60 50121010 50123838 AGACATGATCAGACCTGCC 59 NA Rattus norvegicus 81 Opn1sw ENSRNOG00000006874 ENSRNOT00000009278 3 1 1 80 4 56654510 56655239 CTTCATGAATAAGCAGTTCCG 58 56654450 56654468 CCAGACATGTCAGATTCGT 57 NA Rattus norvegicus 81 Mrps16 ENSRNOG00000006898 ENSRNOT00000009207 2 1 1 165 15 4352587 4352605 TAGTTGCTCTCAACCTGGA 58 4353515 4353535 AAGAAGACTTCTCTTGCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 3 2 2 80 14 86394417 86394437 GACCATCAGATTTGTCTGCAC 60 86394130 86394377 GATATCCAAGTGTACACGCAG 59 NA Rattus norvegicus 81 Cdh9 ENSRNOG00000033837 ENSRNOT00000043050 2 1 1 80 2 67049329 67049347 CATCAACGACAATGAGCCC 59 67049391 67053417 ACAGAGGTACCAACTCCAG 58 NA Rattus norvegicus 81 Snrpep2 ENSRNOG00000034206 ENSRNOT00000040164 1 1 1 60 1 141503965 141503988 CAGATAGAGGGTTGTATTATTGGC 59 141503928 141503948 CTGCATCATCTAATACGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 1 1 3 80 6 131912781 131912803 GATGAAGATGACCATCTACTGTC 59 131838871 131912742 GGAAGGCTCATCTTTACCTG 58 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 2 2 2 80 3 45117461 45117480 AGATGCTGATCAAGCAACAC 59 45112905 45117423 CAGACTCCAATTTACATCTGATCC 59 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814,ENSRNOT00000081649 2 2 2 80 10 72323969 72323990 TGGATTCAAGTATCTCGATTGG 58 72320269 72323929 CATGCTGTCATCACAATCCT 58 NA Rattus norvegicus 81 Hadh ENSRNOG00000010697 ENSRNOT00000014658 1 1 1 80 2 236354244 236355489 TTCATCTTAGACGGGTGGC 60 236354182 236354202 GGCCACCAAATTATTCATGGA 59 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 2 1 1 96 10 109786436 109786529 CAAGCGTAAGAAGCCTTGC 60 109786588 109786607 TTACACTGGAAAGTCCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Ahi1 ENSRNOG00000013969 ENSRNOT00000019076 1 1 1 80 1 16483887 16487092 GGGCATTTCTTAAGCTCCT 58 16487136 16487154 TAGGTGGGTAGTAGAGCTG 57 NA Rattus norvegicus 81 LOC100910017 ENSRNOG00000033024 ENSRNOT00000043610 3 1 1 60 5 78392800 78392819 AAGCGTAATGAGGATGAGGA 59 78392759 78392777 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 2 2 2 80 6 132943697 132943717 CTATCTGGAGATTGAGCTGAG 58 132942511 132943655 TAGTTGCTCTGAATCCTGC 57 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911,ENSRNOT00000074245 1 2 2 95 7 118712039 118714433 GCACTCCAGAGAAGAAATGC 59 118714491 118714509 CCTCTTCAGTCAGCAGGAG 60 NA Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000041527 2 1 2 82 1 72785136 72785573 TCAGACCAATATCCACAGGT 58 72785618 72785636 TCAGGAATCCAGAGGAGGA 59 NA Rattus norvegicus 81 Rnase12 ENSRNOG00000042612 ENSRNOT00000064936 1 1 1 60 15 27981560 27981578 ATTTGCATGTGGACTACCC 58 27981518 27981539 AGAATCATGTAGTTGCAGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga8 ENSRNOG00000027277 ENSRNOT00000027009 1 1 1 60 18 30876336 30876355 GGCAGACACTAATGACAACC 59 30876376 30876396 TGGAATATAGGCTGTGTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd9 ENSRNOG00000008056 ENSRNOT00000010610 2 1 1 81 6 135412210 135412230 CACCTCTGTAACCCAATTACC 58 135411812 135412167 CATCAGGAATGAGCTCCTG 58 NA InUTR Rattus norvegicus 81 AABR07027447.1 ENSRNOG00000047534 ENSRNOT00000071312 1 1 1 60 17 31706404 31706424 GGCAAGACATACTTGAATTGG 58 31706364 31706383 AGATCAGGAACTGAGGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 3 1 1 80 9 81880910 81881878 AATACAGTGCTCAGGTGGT 59 81881922 81881940 CTCGTTGCAGATTCCTCAG 58 NA Rattus norvegicus 81 Gabpb1 ENSRNOG00000010659 ENSRNOT00000045443 3 1 1 80 3 119113901 119113920 CACTGTGACAATACATGCTG 57 119113521 119113860 ACTCCTGTTTCATCTGTAAGG 58 NA Rattus norvegicus 81 AABR07017745.4 ENSRNOG00000061290 ENSRNOT00000072978 2 1 1 92 15 30557609 30606116 CCTAATGCTCAGGAGGAGC 60 30606172 30606190 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Lrrc10b ENSRNOG00000030180 ENSRNOT00000050716 3 1 1 60 1 226501724 226501742 CGGAGGAGATAGAGGAGCT 60 226501682 226501700 TCCAGCTTGTTGAAGTCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst3 ENSRNOG00000000572 ENSRNOT00000000697 2 1 1 89 20 29737142 29738278 TCATATCCAGGGTCTCCGA 59 29737071 29737089 TTTCCGATAAGAGCAGGGC 60 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 2 1 1 60 4 149801038 149801057 GGTGTCCATTGAAGATCCCT 60 149800994 149801015 AGTAGCTGTGAGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr260 ENSRNOG00000047602 ENSRNOT00000049903 1 1 1 60 1 172600015 172600034 ATGTCTTCCCAAATATGCCT 57 172600057 172600075 CGTTAATACAGCCACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr260 ENSRNOG00000047602 ENSRNOT00000049903 2 1 1 60 1 172600015 172600035 ATGTCTTCCCAAATATGCCTC 58 172600057 172600075 CGTTAATACAGCCACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679960 ENSRNOG00000003062 ENSRNOT00000004086 1 1 1 60 X 72449069 72449090 CACAAACAAGTTCTACATGCTG 59 72449110 72449129 TCTTTCCCACTGTAACACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raet1d ENSRNOG00000023659 ENSRNOT00000028992 2 1 1 80 1 1474804 1474824 AGTGCAGTCTTTCTCTGAGTC 60 1473575 1474766 TAACAGAGTGTACATCGTCTAGC 60 NA Rattus norvegicus 81 Asb2 ENSRNOG00000051619 ENSRNOT00000085517 1 1 1 80 6 127212858 127215203 AAGGAGAAGGCAGAACCTC 59 127212796 127212816 TATCCGGTATTTCCCTATGGC 59 NA Rattus norvegicus 81 Hmmr ENSRNOG00000059894 ENSRNOT00000085499 2 1 1 80 10 25873283 25873711 GAAGCAGAAAGAGATGATCTCC 59 25873224 25873244 CTCTGTTAGAACCTGCATCTC 58 NA Rattus norvegicus 81 Tspan11 ENSRNOG00000054360 ENSRNOT00000087834 3 1 1 80 4 160495386 160495404 GTCATGACAACTGGCTTCC 59 160495446 160510246 CAACAGGCAGAAATATGTGGA 59 NA Rattus norvegicus 81 LOC100910500 ENSRNOG00000046648 ENSRNOT00000075355 1 1 1 60 15 35889856 35889875 ATTCATGTACCTTCAGCCCT 59 35889898 35889916 CACAGACGACACTTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps15 ENSRNOG00000024603 ENSRNOT00000029791 2 1 1 84 7 12282437 12282455 ATCATTCTGCCCGAGATGG 60 12282271 12282390 TCATCTCGGGTTTGATCTCC 59 NA Rattus norvegicus 81 Zfp598 ENSRNOG00000012434 ENSRNOT00000065827 2 1 1 81 10 14044442 14044460 AACAAACGGTCCTGTAAGC 58 14044505 14044623 TGGTGGGAGGGTATTTGAG 59 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 3 2 2 83 1 74978363 74978383 CTTATGGGACCGAATTTGTGG 59 74978423 74985459 GAAGGAAATCTGAAGGAAATGAGG 60 NA Rattus norvegicus 81 Eapp ENSRNOG00000004509 ENSRNOT00000006030 2 1 1 80 6 75589124 75589143 CTCCAGGATGACTATGACCC 59 75581885 75589083 CACTTCATCTTCAGAACTGCT 58 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 3 2 2 80 8 72235633 72237231 AAAGTAAATGGAAGTACGGCTG 59 72235574 72235595 AAGGATAGCATTCATGAAGCAC 59 NA Rattus norvegicus 81 AABR07017825.3 ENSRNOG00000048128 ENSRNOT00000072946 3 1 1 62 15 31462833 31462949 GGGATAAACTTTCTCCTGAGAG 58 31462969 31462990 GACATGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mir142 ENSRNOG00000035633 ENSRNOT00000053756 1 1 1 60 10 75050848 75050869 GTCACCCATAAAGTAGAAAGCA 59 75050887 75050908 TAAAGTAGGAAACACTACACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp2 ENSRNOG00000027152 ENSRNOT00000031792 2 1 1 80 14 44054750 44055400 GGTGTTGACTCAGGGTCTC 60 44054688 44054711 CTTCTCATGAATCACTTTAGCCAG 60 NA Rattus norvegicus 81 Pfn3 ENSRNOG00000047752 ENSRNOT00000072298 3 1 1 152 17 9746752 9746770 TTATCCGTGACTACCTGCT 58 9746885 9746904 TCTTATTGAGGATGCCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912008 ENSRNOG00000005247 ENSRNOT00000061242 3 1 1 80 3 4870268 4870286 GTATTACCGGGACCTGGAC 59 4870059 4870226 GTTGTGCTATTGAAGTCTGCA 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202,ENSRNOT00000079176 3 2 2 95 12 30144014 30144033 CAATGAAGAGCCACAAGCTG 60 30126321 30136745 TCTCTTCCACCATCAGCTG 59 NA Rattus norvegicus 81 Gabrg1 ENSRNOG00000002360 ENSRNOT00000003240 3 1 1 80 14 40032366 40032385 CAGTTGTTCTTTCCTGGGTG 59 40032427 40035013 AAACCGTAGTGATACCCAGG 59 NA Rattus norvegicus 81 Mc3r ENSRNOG00000004451 ENSRNOT00000005871 3 1 1 60 3 170253298 170253316 TTATCAACAGCGACTCCCT 58 170253339 170253358 AAGATGTTGTCCATGTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnnbip1 ENSRNOG00000016313 ENSRNOT00000055562 2 1 1 65 5 166491769 166491788 GTACATTCAGCAGAAGGTCC 58 166491816 166492435 CTGGCAGTCAGATTTGACC 59 NA DesignRelaxed Rattus norvegicus 81 Pars2 ENSRNOG00000007327 ENSRNOT00000057471 3 1 1 197 5 126254173 126255962 TATAGAGTGCTGCTGGTGC 60 126256122 126256141 AACCTTCCATGATACCCTGG 59 NA InUTR Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600,ENSRNOT00000034553 3 2 2 81 1 81685452 81685476 CTGGAATCTACCACCTAAATATCCA 60 81685511 81689071 CTTAACAGAGGGTACACAAAGAC 59 NA Rattus norvegicus 81 Rhbdd2 ENSRNOG00000001443 ENSRNOT00000001962 1 1 1 80 12 24095617 24098144 ATAGGCCTATCATATGGCCTC 59 24095557 24095578 AAACTTCTGATCAAGCTTCAGG 59 NA Rattus norvegicus 81 Rhbdd2 ENSRNOG00000001443 ENSRNOT00000001962 3 1 1 80 12 24095615 24098140 GCCTATCATATGGCCTCAC 58 24095553 24095572 AGGGAAACTTCTGATCAAGC 58 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 3 1 1 287 4 108301667 108301960 AAAGGATTTCTGACCCAGC 58 108302211 108302229 TTGTAGCGCAAAGACAAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358,ENSRNOT00000064249 2 2 2 80 2 260527416 260527529 GGGATTGTAGGTGTCTTGG 58 260527570 260527591 GTAATTTAAACTCGTTGGTCCC 58 NA Rattus norvegicus 81 Angptl2 ENSRNOG00000016678 ENSRNOT00000022585 1 1 1 80 3 12275376 12288419 TGATAAGCCATCAGGTCCA 58 12288463 12288481 TTCACCAGGTAGATGGAGC 59 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000056281 ENSRNOT00000083417 3 1 1 61 17 44839800 44839818 TTGAGGACACCAACCTGTG 60 44839757 44839776 GATATCCTTGGGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 3 1 1 80 1 227170055 227171038 AATCTGTCGACTTTGAAGGTG 59 227169299 227169318 CTTATCCTTCACGCTCACAG 59 NA Rattus norvegicus 81 Mroh7 ENSRNOG00000058870 ENSRNOT00000089934 2 1 1 81 5 126316186 126316204 ACCTCAGAAGATGCGAAGG 60 126313391 126316144 ACGAGATGATGTTCTCTACCAG 60 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880,ENSRNOT00000054753 3 2 2 80 1 253251952 253251972 GATTGTGCTGAGCTAAAGGAG 59 253252013 253253004 ACGCATTACAGATACCTCCC 59 NA Rattus norvegicus 81 Lgals1 ENSRNOG00000009884 ENSRNOT00000013538 2 1 1 80 7 120154461 120154480 AACCTGAATCTCAAACCTGG 58 120154523 120155726 CAGGTTCAACACAAAGCTC 57 NA Rattus norvegicus 81 Olr852 ENSRNOG00000018362 ENSRNOT00000024724 3 1 1 60 5 69751768 69751786 CTCTGTGAAATCCTGGCTG 58 69751726 69751747 TGAATTCATTGCCTGAGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003171.1 ENSRNOG00000027102 ENSRNOT00000030895 1 1 1 80 1 97780151 97780173 CCAAATACCACTCTTTACCTCTG 59 97780213 97781426 GTCTCCATTTGAACCACGG 59 NA Rattus norvegicus 81 Elac1 ENSRNOG00000000113 ENSRNOT00000000125 3 1 1 130 18 69711132 69716304 TAAAGCAGGGAGAATCACCA 59 69711021 69711040 AGATCTCAATAGGCTGCCTG 59 NA Rattus norvegicus 81 Dusp5 ENSRNOG00000014061 ENSRNOT00000018889 3 1 1 80 1 274245724 274250024 TACTTCCTTAAAGGTGGGTACG 60 274250064 274250083 CTCTTGTGAAATGGGCTTCG 60 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 1 2 2 80 7 11502010 11502028 GACAGATGTAGACCCAGCT 59 11501766 11501965 CATGTTGGTACCTGGTGTG 59 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 2 1 1 77 14 44548544 44613097 GGACACAACCTGATCAAGG 58 44548485 44548503 CCAACCCTTCTGATGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Mir3120 ENSRNOG00000035513 ENSRNOT00000053636 2 1 1 64 13 80130985 80131003 TCATGTGACTGCCTGTCTG 60 80130939 80130957 GTCTACACTTGCTGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 2 1 1 80 4 157684742 157684760 ATGAGTCTGTCTTCAGTGC 57 157683754 157684698 CTATTACAGCCTTGCCCTC 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467,ENSRNOT00000029615 2 2 2 80 15 4183286 4183305 TTCAAAGACTCCAACAGCAG 59 4183346 4187313 ACGTTTGATGAATCCTGAGAG 58 NA Rattus norvegicus 81 Ctsl ENSRNOG00000018566 ENSRNOT00000025462 3 1 1 80 17 1876234 1876465 CCTATGAAGCAAAGGATGGA 57 1876173 1876191 GAGGGATATCCACAAACCC 57 NA Rattus norvegicus 81 Psgb1 ENSRNOG00000027288 ENSRNOT00000037132 3 1 1 80 1 79187827 79187848 ATTGTACACCCTAGGAATTCTG 58 79187889 79189079 AACACAAGACTCTCCACCT 58 NA Rattus norvegicus 81 Ugdh ENSRNOG00000002643 ENSRNOT00000003691 3 1 1 80 14 44498608 44498628 TCCAAGGATCCATATGAAGCA 59 44498667 44498804 ATCCAGTTCCTTAAACATGTCC 59 NA Rattus norvegicus 81 Lrrc3b ENSRNOG00000005857 ENSRNOT00000007672 3 1 1 60 15 11299136 11299155 ATGTGGTGTACTACGTGAGG 59 11299176 11299196 TTCAAGTATTCCAGGTGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311575 ENSRNOG00000002139 ENSRNOT00000002908 1 1 1 80 14 33670688 33670706 GACTTCGTCCTCACCAGTC 60 33668300 33670646 ATCACTGGATTTGTTCTCCGT 60 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 2 2 2 127 1 80650275 80655213 CTCAGAGTCATAGCCCAGC 60 80650166 80650184 GAGATCCAGGTGATTCGGG 60 NA Rattus norvegicus 81 Spag6 ENSRNOG00000025787 ENSRNOT00000022328 3 1 1 82 11 88478484 88478502 TTTGACCCTGGAGTCAAGG 59 88478545 88483754 ACCACAGCTTGAGATAATTCTG 59 NA Rattus norvegicus 81 Med24 ENSRNOG00000008711 ENSRNOT00000011947 2 1 1 80 10 86644863 86644970 TCTCAACCTAGCAGAAGCAC 60 86644802 86644826 TACTTCAGGTAAGACAGGATAAGAG 59 NA Rattus norvegicus 81 Olr1l ENSRNOG00000053124 ENSRNOT00000087016 2 1 1 60 1 64481423 64481442 GTTTGCCTGGATGTTGTCTC 60 64481465 64481483 GCAGAAGAAGTGGTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422,ENSRNOT00000085465 1 3 3 80 20 35260444 35260794 GCAGAGACACTGAAGTATCTG 58 35260384 35260402 CTCGGTGTTGAAGATCCAG 58 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 3 1 1 60 20 3791658 3791677 AGCTGTGATCATTGTAGCTG 58 3791440 3791635 TCCACCTGTGTTTCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ins2 ENSRNOG00000020405 ENSRNOT00000027656 1 1 1 121 1 215857862 215857999 GCAAGCAGGTCATTGTTCC 60 215857759 215857777 GAGAACCACAAAGGTGCTG 59 NA InUTR Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000086096 2 1 2 116 10 110138604 110144866 CCGTAACAGGTGAAACCAG 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Usp8 ENSRNOG00000010729 ENSRNOT00000015124 1 1 1 80 3 119215844 119217559 GGATCTAAATAAGGCTGACAATCG 60 119217597 119217616 TGTTCTGCCGCTTTAAAGTC 59 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 1 2 2 80 19 56784321 56787155 TTCTCACTGATTCTGACTCCC 59 56784261 56784279 GGTTGAGGTGGAGGTAGAC 59 NA Rattus norvegicus 81 Il23r ENSRNOG00000007544 ENSRNOT00000010151 2 1 1 80 4 98254640 98280919 TGATATAGTGATACCTTCTCCATCC 59 98254584 98254605 CAGTAAATTATGGTCTTGGGCA 59 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 3 1 1 61 15 34252028 34252048 TGCAGTTTCACGTTAACTCTC 59 34252068 34252439 CTTTATGTTGAAGAAGTTGCCG 59 NA DesignNoJunction Rattus norvegicus 81 Ubxn10 ENSRNOG00000027731 ENSRNOT00000000167 1 1 1 60 5 157161089 157161107 CTTTACCAAGAGGAGGCCC 60 157161047 157161067 CTTGTGTTCTGGAGTCTTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntsr2 ENSRNOG00000049054 ENSRNOT00000071387 1 1 1 80 6 41921863 41923284 CGATGATGGATGGACTAATGAG 59 41923325 41923343 GAGCTGACATAGAAGAGCG 58 NA Rattus norvegicus 81 Timm21 ENSRNOG00000015142 ENSRNOT00000020376 1 1 1 80 18 81805354 81805460 GAGTCAGCATTACAGGCAG 58 81805292 81805314 TCCCATAGATGATGTTAGGACTG 59 NA Rattus norvegicus 81 Adgrg5 ENSRNOG00000039891 ENSRNOT00000061270 2 1 1 80 19 10504707 10504728 GAGATACTGAACTTGATGAAGC 57 10504346 10504666 CAGGTGGTGGATAAACCTC 58 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 3 2 2 80 5 173384613 173384716 CAACACAAGGCTGTGTCTC 59 173384759 173384778 GTTAGAATGGTGGAGACGGA 59 NA Rattus norvegicus 81 LOC102553180 ENSRNOG00000048674 ENSRNOT00000027402 1 1 1 60 18 29952438 29952456 GTGAACGACAATGCTCCTG 59 29952479 29952498 TATTCTCCTTCACGAACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba1 ENSRNOG00000019164 ENSRNOT00000031115 2 1 1 80 X 1735298 1736327 TTAGTGGTTTCCAGGTGGT 59 1735236 1735254 CACGGCTATGACAGAACTC 58 NA Rattus norvegicus 81 AABR07028748.1 ENSRNOG00000030638 ENSRNOT00000043042 2 1 1 99 17 84613312 84613330 CTTCCACCTTTGATGCTGG 59 84613133 84613249 AGCTGAGGTACCTGATTGG 59 NA Rattus norvegicus 81 Olr1627 ENSRNOG00000012510 ENSRNOT00000016674 1 1 1 60 15 26888586 26888605 TTCTACACCATCTTCACACC 57 26888628 26888646 CCTCTTTGTTTCTCAGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina12 ENSRNOG00000042634 ENSRNOT00000012960 2 1 1 82 6 127702789 127704651 CTATATTTACTTTCAAGGCAGGTGG 60 127702731 127702752 TGCCTTCCTCTATGAAGAAGTC 60 NA Rattus norvegicus 81 Dctpp1 ENSRNOG00000017850 ENSRNOT00000024074 1 1 1 85 1 198703827 198705709 GAACTCTTTCAGTGGAAGTCTG 59 198703763 198703781 CTAAGCTCCTCCTGAAGGG 59 NA Rattus norvegicus 81 Sssca1 ENSRNOG00000012736 ENSRNOT00000017034 2 1 1 82 1 221088499 221089050 GATAAAGATAACCCGGCTCTG 58 221088437 221088455 GCAGGCTCTGTAGTAGAGG 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182,ENSRNOT00000091167 1 3 3 82 15 35002485 35002503 ATGTCACCTTCTGTGGTGG 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 LOC680384 ENSRNOG00000029278 ENSRNOT00000047850 2 1 1 60 4 31705056 31705074 CTGGTAACTTACGTGCCTG 58 31705098 31705116 TCTCATCCACATTGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC289035 ENSRNOG00000027702 ENSRNOT00000033636 2 1 1 183 13 51218518 51218661 CCATTCCAGTTTCTATGGATCC 59 51220574 51220592 TGATTAGGGATGCCAGGAC 59 NA InUTR Rattus norvegicus 81 Tbc1d1 ENSRNOG00000002180 ENSRNOT00000029209 1 1 1 80 14 45683817 45683837 AATTAGAACTCCAGAAGCACC 58 45679908 45683778 GTCTCAATTTCTGAACTTCCTC 57 NA Rattus norvegicus 81 AABR07058091.2 ENSRNOG00000061264 ENSRNOT00000074953 3 1 1 80 7 99758044 99758485 GGACCTAGTTCAATGGGAGG 60 99757983 99758001 CGGTCTGTTTCCTTCAGGT 60 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 2 3 3 80 20 34579170 34579191 AGTATTCTTAATCAACGCGCTC 59 34576300 34579131 AGCTGAACAGTTCATTGATCG 59 NA Rattus norvegicus 81 Ptchd3 ENSRNOG00000046946 ENSRNOT00000074372 1 1 1 80 10 111032516 111033360 TCTGGAAGACATAGAGGTGG 58 111033403 111033421 GGAATCACAGTCTTGGAGG 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122,ENSRNOT00000085899 2 2 2 80 7 12157411 12157430 AGCAGCTCCCAGTATTACAC 60 12157473 12158079 CTTGGGCTGAGTATCCAGG 60 NA Rattus norvegicus 81 Ada ENSRNOG00000010265 ENSRNOT00000014151 1 1 1 80 3 160124504 160127322 CATCTTGTACTATGGCAAGAAGAG 59 160124447 160124465 TCCATGCCGATAATGTTGC 59 NA Rattus norvegicus 81 Ccdc59 ENSRNOG00000004183 ENSRNOT00000005740 3 1 1 81 7 47929932 47932406 CCGAGTACAGTAAATTCTGTGAC 59 47932445 47932465 GTTCATACTCTTCCTGTGCCT 60 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000073138,ENSRNOT00000016133 1 2 2 80 10 66209960 66209979 AAGAGGAACAACTACTGCTG 58 66210022 66211638 ATTTCTTCAGAGTCTGCCC 57 NA Rattus norvegicus 81 LOC100361492 ENSRNOG00000001466 ENSRNOT00000001990 3 1 1 80 1 258246890 258246909 CAGAAACCACAAGCACTACC 59 258246951 258247900 CTTCCTGGACTTTAGCTGTG 58 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 3 2 2 84 4 153936531 153936549 GATGATGCCTTTGTCCCAG 59 153936597 153937031 CATACAGACGAACTGGCTG 58 NA Rattus norvegicus 81 AABR07031019.1 ENSRNOG00000060785 ENSRNOT00000073032 3 1 1 80 10 112062320 112063731 AGGAGAAACATTGGTTCCC 57 112063775 112063793 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Tceanc2 ENSRNOG00000009398 ENSRNOT00000048784 3 1 1 81 5 126754877 126771154 TCGACAAGGATAGGTCATGC 60 126754815 126754835 TGTAAACTTCTTTGGCAAGGC 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 2 2 2 80 11 87915049 87916302 ACAAACAGAACCCGAGAGG 60 87914987 87915005 CATGGACTTGAGGACCTCC 60 NA Rattus norvegicus 81 Tnfrsf1b ENSRNOG00000016575 ENSRNOT00000022478 2 1 1 80 5 163146764 163147301 CCGTTCAAGAACCTCAAATGG 60 163146704 163146723 TCTGTGGATGATGTGGTGTC 60 NA Rattus norvegicus 81 Klrb1c ENSRNOG00000007811 ENSRNOT00000010312 2 1 1 80 4 162548841 162548859 TTTGGCTCTGAAACTTGGC 59 162548901 162549546 AGGAATCTCACGAAGACACTG 60 NA Rattus norvegicus 81 Vpreb1 ENSRNOG00000052348 ENSRNOT00000081776 3 1 1 173 11 88376312 88376330 CTGCTTCCTAGCTGGTCAG 60 88376553 88376572 AGGTTCCAAGGAAGGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc25a2 ENSRNOG00000027359 ENSRNOT00000027128 3 1 1 60 18 30774757 30774777 CTGTCCCTTTGATGTTAAGTG 57 30774717 30774738 GGGAATATGATAAGCCAGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 1 2 2 80 12 25060981 25062074 TCCTCAAGGAGGTGAAGGT 60 25062118 25062136 GCTTGTCCTTGTACAGCAC 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 1 2 2 60 15 34342123 34342142 TGACTGGAAAGGAGATTGAG 57 34341773 34342100 TCCTTGATTCGTTCCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914,ENSRNOT00000010929 1 2 2 171 7 31784583 31784601 GTGAAGAGCCGAAAGAAGC 59 31784736 31792212 GAAATACAAGCCAGGCCAG 59 NA Rattus norvegicus 81 Eif2b5 ENSRNOG00000038160 ENSRNOT00000002321 1 1 1 80 11 84087157 84087177 TCACAGACAACTTTGACTACC 58 84086860 84087118 TCTGATTTCCTAGGATCTCCTC 58 NA Rattus norvegicus 81 AABR07051741.1 ENSRNOG00000057548 ENSRNOT00000044699 3 1 1 60 3 20641910 20641929 GTTGCCACATATTTCTGCCA 59 20641951 20641970 TGCTATGGTTTGTATCACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir876 ENSRNOG00000041320 ENSRNOT00000063073 1 1 1 60 5 52461696 52461717 GTGGATTTCTCTGTGAATCACC 59 52461657 52461678 GAATTACTTTGCAAACCACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 3 2 2 89 7 60135864 60135882 ATCCTTCTGTGGGAAGTGC 60 60134030 60135817 CATAAGTATGTACTTGTTCCTCAGC 60 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 2 2 2 85 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128197 GAGCAAATGATCTCCTGGGT 60 NA Rattus norvegicus 81 Cdca4 ENSRNOG00000013898 ENSRNOT00000018596 2 1 1 142 6 137421116 137421134 GGGTTTGAACGAAAGCTCC 60 137398153 137421010 TAGCAAACATCCTGTCCGG 60 NA InUTR Rattus norvegicus 81 Mfn2 ENSRNOG00000046447 ENSRNOT00000065985 2 1 1 80 5 164563644 164565096 AAGTTCAGCAAGAATTGTCTGG 60 164563585 164563605 TTTCCTGCTCCAGATTATCCC 60 NA Rattus norvegicus 81 Lrrc4 ENSRNOG00000008098 ENSRNOT00000010673 2 1 1 60 4 56113509 56113527 ACATGCCCAATCTTACACC 58 56113467 56113486 AAGTGGTTCCCTGACATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000090071,ENSRNOT00000084230 3 3 7 119 1 83653420 83653705 TCATGAAGATCAGCCAACGT 60 83653787 83653805 ATTCCTCAGCTTGGTCCAC 60 NA Rattus norvegicus 81 Hcrtr1 ENSRNOG00000013838 ENSRNOT00000018674 3 1 1 83 5 148351796 148351814 GGAATGCAGCAGTGTTCTG 60 148351447 148351749 TAGAGTTCATCTGCCCAGC 59 NA Rattus norvegicus 81 Ifi27l2b ENSRNOG00000026605 ENSRNOT00000032015 2 1 1 88 6 127336998 127337017 CAAGATGATGTCTGCTGCAG 59 127336505 127336952 CAAGTACACCTATTGACTGTAGTG 59 NA Rattus norvegicus 81 LOC100359752 ENSRNOG00000038241 ENSRNOT00000058219 3 1 1 80 18 81675252 81679369 ATATGAAGCTAAGATGGAGGC 57 81675192 81675211 CTAGCCATGAGTGAGTAGGA 58 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 2 1 1 84 7 12344747 12344765 TCCAGGTTAAGAGCTCAGC 59 12342976 12344699 ACTTCATTCTGAGAGGCCA 58 NA Rattus norvegicus 81 RGD1560987 ENSRNOG00000022882 ENSRNOT00000032787 3 1 1 93 14 51439166 51439185 CTTAGGTGGCAACCTTGAC 59 51439242 51439260 CTCCCAAGTCCTCTTCAGG 59 NA Rattus norvegicus 81 Rn60_X_0752.1 ENSRNOG00000051243 ENSRNOT00000075937 1 1 1 60 X 74295775 74295794 GCTTCTTGCAGAGAAAGTGG 60 74295817 74295835 GTAGTCTATTTCCGCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 1 2 2 135 6 135198919 135198937 TTCAACCACCTAACAGCCA 59 135199030 135213007 GTGACTTGTCTATTAGTCTTTCCTC 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 3 2 2 136 6 135198919 135198937 TTCAACCACCTAACAGCCA 59 135199032 135213008 CGTGACTTGTCTATTAGTCTTTCC 59 NA Rattus norvegicus 81 Olr463 ENSRNOG00000060217 ENSRNOT00000082357 2 1 1 60 3 73235690 73235711 ATCCTCTTTGCATTGTTTCTGG 60 73235732 73235750 TCATGCCCAAATTACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lep ENSRNOG00000045797 ENSRNOT00000071926 2 1 1 70 4 56347130 56347150 CCAGGATCAATGACATTTCAC 57 56348747 56348765 AATGAAGTCCAAACCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100158225 ENSRNOG00000007436 ENSRNOT00000047734 3 1 1 90 10 13589511 13589694 AACTCCAGATGGCTTCAGG 59 13589439 13589458 AGTGTACAGGCCTTTCTCAG 60 NA Rattus norvegicus 81 Cpa2 ENSRNOG00000028092 ENSRNOT00000029608 3 1 1 80 4 57864948 57864968 TACTCTGGATATCTTCCTGCT 58 57865009 57866095 TTTCTCCACATTCGATTGGT 58 NA Rattus norvegicus 81 Fam214b ENSRNOG00000009323 ENSRNOT00000012386 3 1 1 114 5 58479502 58479520 AAGCTCCCTTCGAACTCTC 59 58479286 58479426 CAGTGATTCCTCAAAGTTGCC 60 NA Rattus norvegicus 81 LOC500475 ENSRNOG00000024506 ENSRNOT00000034978 1 1 1 80 5 78392006 78392026 GCATCAGAATTTACCTTCCCT 58 78392068 78399335 AGACTTCCAAGACCTTCCA 58 NA Rattus norvegicus 81 Col11a2 ENSRNOG00000000463 ENSRNOT00000085547 1 1 1 80 20 3856399 3857094 CTTCCCGATGGAGAGTACTG 59 3857135 3857155 TGCTGTAAAGTTGCAGAACAC 60 NA Rattus norvegicus 81 Atp6v1f ENSRNOG00000007392 ENSRNOT00000009737 1 1 1 80 4 56744701 56744719 GCCACCCTAATTTCCTGGT 60 56744762 56747234 CCCTGTTTAGAAACTGCCTG 59 NA Rattus norvegicus 81 Ctsq ENSRNOG00000017946 ENSRNOT00000024208 2 1 1 80 17 3994999 3995018 CAACTAAAGGTCCCATTGCT 58 3995058 3995756 GCTCATGATAAACACCTTTCTG 58 NA Rattus norvegicus 81 Bap1 ENSRNOG00000019097 ENSRNOT00000025853 3 1 1 80 16 7340680 7340698 TTAAGTATGAGGCCAGGCT 58 7340741 7341014 TTACTCTAATCAGCTGCTGC 58 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 3 1 1 61 4 98481762 98481780 GCAGGCTGATGATATTGCA 58 98481805 98542657 CGAATGTGGGAGGAGACTC 60 NA DesignNoJunction Rattus norvegicus 81 Tpgs2 ENSRNOG00000054118 ENSRNOT00000082963 1 1 1 80 18 17343794 17343812 GTGCGATATTTGAGCTGGA 58 17342091 17343750 GAGCTAATCCAGGTTTCCC 58 NA Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 1 1 1 80 4 153784937 153785584 GAGCCTACAGTAGTAGACGAG 59 153785626 153785644 CTCCTTCCCTGTGATCAGC 60 NA Rattus norvegicus 81 Zfp688 ENSRNOG00000018379 ENSRNOT00000024858 2 1 1 87 1 198868467 198868485 ATGGAACAGGAGAGTGAGG 58 198866646 198868416 GAGTATCTCCTCTCGGAGC 59 NA Rattus norvegicus 81 LOC102553866 ENSRNOG00000031003 ENSRNOT00000052100 3 1 1 85 1 198838537 198838555 AGGAAGAGACCGAACTGTG 59 198837966 198838489 TTGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000079231 2 1 2 80 X 123209964 123212614 TCAGTTCACCTTCAAGTACCA 59 123212653 123212674 TCTTCATCATCCGAGTACACAG 60 NA Rattus norvegicus 81 Nop10 ENSRNOG00000005184 ENSRNOT00000006887 3 1 1 69 3 103747759 103747778 TATTACCTCAACGAGCAGGG 59 103748038 103748056 AAGTCTGTTGTCCCATGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 2 1 1 83 6 138631739 138631761 CCTATACCTGCAAATGGATAGTC 59 138631635 138631698 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 Srd5a1 ENSRNOG00000017601 ENSRNOT00000023659 2 1 1 113 1 36329907 36336437 GTTTCCTGACAGGCTTTGC 60 36336512 36336532 CCCTGGGTATCTTGTATCCAG 60 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 3 1 2 113 3 114918609 114918627 ATGAGGTGCTGGTACTTGG 59 114918704 114920907 AGAAATGCCTCTCACTGGG 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 3 1 2 189 3 114918712 114920915 GAGGCATTTCTACCAGCCA 60 114921066 114921622 TATTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Tpsg1 ENSRNOG00000018701 ENSRNOT00000025236 3 1 1 84 10 14729226 14729804 TTCTCTGGGTCTGTGAACTC 59 14729850 14729869 TTACGGTGGAGAAATGAGGA 59 NA Rattus norvegicus 81 Olr1638 ENSRNOG00000011615 ENSRNOT00000015439 1 1 1 60 15 28446597 28446615 ACCCATGTATTCCCTCCTC 58 28446555 28446573 CACCGTAGAAGAGTAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf16 ENSRNOG00000033694 ENSRNOT00000045421 2 1 1 85 7 12007208 12007226 AGTCTTCGCACCTCAAGTC 60 12014498 12014516 GAACTTCTTGTCACAGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 1 2 2 80 4 57760339 57762692 ATATACGGACAGGCAATGG 57 57762734 57762754 GTCTGTGCTATAGATGTAGCC 58 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 2 2 2 80 9 116094552 116094574 AATAGTACTACCCTATCCAACGG 59 116089433 116094513 AAGTATTGACACGGAACCAC 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 1 4 4 80 17 4256429 4256725 ACAACACGAACGAAGAAGG 58 4256769 4256787 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Thpo ENSRNOG00000050172 ENSRNOT00000073743 2 1 1 84 11 82851597 82851847 CTAGGAACCCAGCTTCCTC 59 82851895 82851913 GAAGCAGTTGTTGCAAGCT 60 NA Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 2 1 1 80 4 56997404 56999916 TTTCTCAGACAAGGCTCGG 60 56999959 56999978 TGCAGATCCAGATCATCTCG 60 NA Rattus norvegicus 81 Sel1l3 ENSRNOG00000004932 ENSRNOT00000006610 1 1 1 80 14 60198593 60200435 GAGGAATCTGACACTAGCTG 58 60200478 60200496 AGAGAACACCACAATGTCC 57 NA Rattus norvegicus 81 Gtpbp1 ENSRNOG00000014634 ENSRNOT00000049247 3 1 1 81 7 120940607 120940625 AAGATCCCTGTCTTGGTGC 60 120940670 120943034 ATATCGGGCACATCCTCTC 59 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 1 1 1 80 10 53838046 53838145 GCAAGTGGATGATCTTGAAGG 59 53838187 53838205 TCCAGTTTCCTCTTGGCTC 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651,ENSRNOT00000048980 2 2 2 80 X 10590515 10590536 TGTGTCATACTATACCCATCGG 59 10588516 10590476 TGTATCCATTCAGCCATCCTC 60 NA Rattus norvegicus 81 Rpl39l ENSRNOG00000032300 ENSRNOT00000051564 3 1 1 76 10 5533466 5533484 CCACTGGCTTAGACTCACC 60 5529907 5529925 GAAGGTCTTGTGAGAAGCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Efr3a ENSRNOG00000025528 ENSRNOT00000045357 3 1 1 80 7 106597026 106597044 TGGAAGTGATGCACAACCT 60 106597084 106597609 CAGCCACATCTGGAATTATTCTG 60 NA Rattus norvegicus 81 Prtn3 ENSRNOG00000029814 ENSRNOT00000014687 3 1 1 81 7 12643863 12644419 GCATTTGCTTCGGAGACTC 59 12643800 12643818 CATTCGCGAATCACGAAGG 60 NA Rattus norvegicus 81 Spire2 ENSRNOG00000016920 ENSRNOT00000022823 3 1 1 80 19 56161400 56161777 ACTGAAGCAGGTCTCAGAG 59 56161819 56161839 ATTTCCTCCAGGATCTTCTCG 59 NA Rattus norvegicus 81 Eif5 ENSRNOG00000010218 ENSRNOT00000013695 3 1 1 80 6 136006749 136006768 TGTATCCACCAGTGAGACAC 59 136006808 136007099 TCATCTTCCTCTTCTTCCACAG 60 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 1 1 1 60 7 114944353 114944373 TATGGATATGGTCAGCATGCA 60 114944312 114944331 TGCTGAGGATGTGAATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp251 ENSRNOG00000030308 ENSRNOT00000028184 1 1 1 110 7 117938520 117938538 TAAGCCAGAGCTGATCTCC 59 117912920 117938446 ATCTCAGAATCTGTCCCGC 59 NA Rattus norvegicus 81 LOC689766 ENSRNOG00000021411 ENSRNOT00000029081 1 1 1 80 13 95902003 95902022 CGGACAAGTGGCATAATGAG 59 95902062 95907632 CTAGTTTCTTATCCCAACCGAG 58 NA Rattus norvegicus 81 Taar7h ENSRNOG00000048072 ENSRNOT00000043436 2 1 1 60 1 22451414 22451435 CCTCATTGACTCCATCATTGAC 59 22451375 22451395 TTCATACACATAAGAGGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632,ENSRNOT00000013118 2 2 2 81 16 48621782 48621801 CTTATCTGAGCGACCTTCCA 59 48610499 48621486 TGGTTCTTGCTTGATGTGC 59 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 1 1 1 80 10 48609447 48609466 TGCATTTCAACTCTAGAGGG 57 48609506 48623688 AGTATTGGCTCTTTCTTCTGAC 58 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 2 1 1 80 10 48623809 48625144 GAAAGACACCCACAGACCA 60 48625187 48625206 GTAGGCATCATCAAAGTGGC 59 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 2 2 3 84 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717828 164717848 TCAGGGTGTAGATGATAGGGT 60 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000057404,ENSRNOT00000006624 2 3 3 80 15 109970334 110020814 GCTTTAATGAGATAGGCACGA 58 109970274 109970294 CTCTGTACATGAGGAATACCC 57 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000061753 ENSRNOT00000086709 1 1 1 60 3 74766582 74766603 TGTCATCATGTCACAGAAAGTC 59 74766543 74766561 GGCACTGAACAGATAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Auts2l ENSRNOG00000034287 ENSRNOT00000044800 2 1 1 81 12 27629403 27629421 AGTGAAAGCGCTAGTGGAG 60 27629465 27647016 TGGAAGGAGCTGAACTATCG 59 NA Rattus norvegicus 81 Nat2 ENSRNOG00000049498 ENSRNOT00000044198 1 1 1 80 16 23962125 23984534 AATTGACTGGAAACCATGGAC 59 23962065 23962084 TTCCAAGTCCAGTTTGTTCC 58 NA InUTR Rattus norvegicus 81 Vom1r69 ENSRNOG00000058549 ENSRNOT00000088453 2 1 1 60 4 87455269 87455289 CTATCTGTATCACCTGCCTCC 60 87455309 87455329 GAGGTACTGGGACTTATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 1 3 3 80 1 275866775 275866795 CTCTTCAACAGCTTCTTCTGG 59 275866166 275866734 CAGATTCGTCTCAGTTGCAG 59 NA Rattus norvegicus 81 Olr1076 ENSRNOG00000039448 ENSRNOT00000060455 2 1 1 60 7 13424745 13424763 TCAGATCGTACACCATGCC 60 13424703 13424723 TGCGATGTAAATCACCATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1394 ENSRNOG00000047636 ENSRNOT00000043058 3 1 1 60 10 34673577 34673597 CAACCCTCTGATCTATACCCT 58 34673619 34673637 TAGCACCTTCCATAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC094516.1 ENSRNOG00000057064 ENSRNOT00000082938 2 1 1 60 15 28128239 28128259 TAACGAGATGATGAAGAGCAG 58 28128280 28128299 GAAGGTGTTCATGGACTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb19 ENSRNOG00000039469 ENSRNOT00000060484 3 1 1 60 18 30575396 30575416 TTGGCTCACTGATTATCACTG 58 30575436 30575456 AGTTCACCATTAGTTCCCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm5 ENSRNOG00000020484 ENSRNOT00000040850 3 1 1 80 1 216261100 216263460 GAAATTGATGAGGCCCGTG 59 216261038 216261057 GGCATAGAGATTAGGGCAGG 60 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000065748 2 2 3 80 11 11147226 11147246 TTCTGGGTAGAGATCCAAGAG 58 11142084 11147185 TGCCAGTATCAGAAATCCGT 59 NA Rattus norvegicus 81 LOC103692768 ENSRNOG00000056595 ENSRNOT00000084203 1 1 1 60 7 6803090 6803110 TTACATCTGCTTGTATCCCTC 57 6803050 6803068 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103692768 ENSRNOG00000056595 ENSRNOT00000084203 2 1 1 60 7 6803295 6803315 AAGAACAACACGATAACCACC 59 6803255 6803275 TCTGAAGTTGAGGATCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpat2 ENSRNOG00000013906 ENSRNOT00000018677 2 1 1 80 3 119998388 119998406 TGTACTGTTCTCCCAAGGG 59 119998450 119998716 AGTAGAGCTCTGAGAGCAG 58 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 3 1 1 80 10 75059342 75059361 AGCGAAAGAAATGTGAGAGC 59 75059404 75059648 CCCTCAGCTGTAGTTCCAG 60 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 2 1 2 74 6 139293172 139293300 AAAGGTGTCCAGTGTGAGG 60 139293338 139293356 GAGTTTCAGGGACCTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000029104 1 1 2 80 14 64391596 64475195 CTATTCAAAGTCTACTGTGCGT 59 64391537 64391555 GAAGAGACCAAACCGTCTG 58 NA Rattus norvegicus 81 AC109901.2 ENSRNOG00000059447 ENSRNOT00000074614 1 1 1 80 11 85618750 85618890 CACTTAACAGGGTCATGTGC 59 85618929 85618951 CAGTTTGACTGTGCTTTCTAGAG 60 NA Rattus norvegicus 81 Ythdc2 ENSRNOG00000039241 ENSRNOT00000060098 1 1 1 80 1 182116424 182116443 TTTACGAGCCAAGTAGAGCA 59 182116168 182116381 ATCTAAAGCCATCCAGCCA 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422,ENSRNOT00000071522 3 2 2 81 7 117678345 117678363 GCCCTCAGTACTTTGTGGA 59 117678182 117678300 AAATCCTCCAATTCGGGCA 60 NA Rattus norvegicus 81 Wfikkn1 ENSRNOG00000021578 ENSRNOT00000060156 2 1 1 167 10 15245693 15245711 TCATCCATCTGACCTCGGA 60 15244874 15244892 CATTGGTGCAGCACTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1442 ENSRNOG00000031246 ENSRNOT00000042880 1 1 1 60 10 44528033 44528052 AAGACACGTCCCAATATGAG 57 44528073 44528093 GGTAACAACAGAATGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 3 2 2 80 10 86831185 86831203 TCTTGGTTTGCTCTTTGCT 58 86831244 86832036 TGTAGGCTTCATATAACTTCCC 58 NA Rattus norvegicus 81 Ust ENSRNOG00000016381 ENSRNOT00000022003 3 1 1 81 1 2375367 2375386 ATGTGCTGCTTCTACTGGAG 60 2334221 2375323 TTCCTATGCTCTGGGTCCT 60 NA Rattus norvegicus 81 Phlda3 ENSRNOG00000009068 ENSRNOT00000011999 3 1 1 112 13 52589581 52589599 CAGAGTCTTGGAACTGGGA 59 52589675 52591355 AAGTGGACAGAGAAGCTGG 59 NA InUTR Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 2 2 2 81 11 86839223 86839246 GGAGTATATTCAGCCAATACTGAG 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 3 2 2 81 11 86839224 86839247 GAGTATATTCAGCCAATACTGAGC 59 86839287 86839839 TGATGGTGTTGGTTCTGGT 59 NA Rattus norvegicus 81 Atg7 ENSRNOG00000007486 ENSRNOT00000067532 3 1 1 80 4 146603838 146603857 CATAAAGTCAGGTGCTGCTC 59 146603900 146607744 TACTTCTTTAGGTCCGCGA 58 NA Rattus norvegicus 81 Abcb10 ENSRNOG00000017993 ENSRNOT00000024232 3 1 1 80 19 56760298 56761457 CAGTCTTCAGGTCAGAGCA 59 56760236 56760254 AAAGAAGGCAACCTCTTGC 59 NA Rattus norvegicus 81 Fndc3b ENSRNOG00000024089 ENSRNOT00000034096 1 1 1 80 2 113133469 113143694 CGAAACTACATACCGGATCAG 58 113133409 113133430 GTCTTTGCTTTGATGAACTGAC 59 NA Rattus norvegicus 81 Polr2d ENSRNOG00000016231 ENSRNOT00000021738 2 1 1 82 18 24570882 24572240 TCCCAAAGAGTTCGAAACAG 58 24572285 24572303 TCTCATTCTGCTGCTTTCG 58 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 1 2 2 80 16 48940073 48940092 GTGGAGATCCTACCTTCCTG 59 48939920 48940033 ATTGATATCCTTGTTCCTGCAC 59 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625,ENSRNOT00000073341 2 2 2 80 4 157007883 157008297 ACTGAAGATGAGTTGGTGG 57 157007821 157007839 CATCTTGAAGGTCTGAGGG 57 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 1 2 2 80 4 115265432 115271511 ACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 1 1 1 97 10 70100735 70100753 GACCAAAGGTGGCATTACG 59 70101008 70101026 TTCCTTTCCTGCCTGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 3 1 1 105 10 70100727 70100745 GACACTGTGACCAAAGGTG 59 70101008 70101026 TTCCTTTCCTGCCTGATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000092095 2 1 2 81 7 118895554 118906306 GAAGATTCCTGAGGAGAAATGC 59 118906348 118906366 GAGCTGCAGGTTCTCTAGG 60 NA Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 3 2 2 80 11 81785802 81789549 GTTTGACAAAGGAGCAGAGG 59 81789589 81789610 GATGTCCTGTACTAACCAACCA 60 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653 2 1 2 96 10 16792787 16792805 CTTTGATCGTGATGAGCGT 58 16786791 16792729 AACATGGTGATGATAACTCCC 58 NA Rattus norvegicus 81 Polr3c ENSRNOG00000033560 ENSRNOT00000028815 1 1 1 80 2 198843623 198843641 ACAATGCTCCGAATGAGTG 58 198841792 198843581 TCTGAAGATCTCATTGGAGGA 58 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 1 3 3 80 5 122132555 122132575 GAACATTGCGACATCTTTCAG 58 122132615 122132726 TGCTAACACCATGTCAATCAC 59 NA Rattus norvegicus 81 Ccnd3 ENSRNOG00000050258 ENSRNOT00000074217 1 1 1 103 9 15406465 15406918 TGTGCCACAGATTACACCT 59 15406380 15406398 TCTGCAGACATAGAGCAGG 59 NA Rattus norvegicus 81 LOC100361061 ENSRNOG00000025179 ENSRNOT00000038531 2 1 1 106 20 43143075 43143096 CATGAGGTCGGGAAGTACC 60 43143165 43143184 TTCCTTACCCTCAAGAGCTG 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000018925 ENSRNOT00000025584 3 1 1 140 1 253298333 253298355 CTCAAGTTTGTAATGCTGGC 58 253298212 253298230 CAGGTGTAAGAAGCCTGTG 58 NA Rattus norvegicus 81 Lemd3 ENSRNOG00000024027 ENSRNOT00000039532 1 1 1 80 7 63001186 63002404 GTGCTTAGGTGTAGTCCTG 57 63001124 63001142 TGCCTTGTCTCTTCTTCCT 58 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 2 2 2 80 20 44882612 44882630 CTCCTGAAATGCTTCCCTG 58 44882672 44890506 GTTTAGTGTTACCTTTGCTCC 57 NA Rattus norvegicus 81 Cirbp ENSRNOG00000015999 ENSRNOT00000021648 2 1 1 103 7 12402889 12402994 CAGATCTCGGAAGTGGTGG 60 12402804 12402822 ATCATGGCATCCTTAGCGT 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206,ENSRNOT00000024711,ENSRNOT00000087402 3 3 3 80 5 167997446 167998562 CGAGCTGGGATTAAAGTCAC 59 167997385 167997405 CGGACAAATCACTACATCACG 60 NA Rattus norvegicus 81 Usp43 ENSRNOG00000003785 ENSRNOT00000065383 2 1 1 80 10 54445663 54445682 AACAGAGCAACACCTTTGAC 59 54444140 54445623 AAGTGACACTCAAGAATCTCGT 60 NA Rattus norvegicus 81 Itpa ENSRNOG00000021233 ENSRNOT00000028838 2 1 1 81 3 123218864 123220643 TGAGCAAACGTATGCAGAG 58 123220687 123220706 CTCTTGGAGCTTGAACAGAG 58 NA Rattus norvegicus 81 Rhobtb3 ENSRNOG00000012414 ENSRNOT00000016838 2 1 1 80 2 2635193 2635211 GCTGCTTCATTTCATTGCC 58 2630362 2635151 CTTCGTTCTTCCACTGAAAGG 59 NA Rattus norvegicus 81 Olr880 ENSRNOG00000042424 ENSRNOT00000067319 2 1 1 60 7 3751315 3751336 GCCATCAATAAGGTTGTATCTG 57 3751276 3751294 TGAATGGGTTGAGCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk11 ENSRNOG00000014287 ENSRNOT00000060683 1 1 1 80 7 12445749 12445768 CAGAGATTGCCAATGGACTG 59 12445406 12445708 TGATGTTGTAGAGTGTGACCC 60 NA Rattus norvegicus 81 Stk11 ENSRNOG00000014287 ENSRNOT00000060683 3 1 1 80 7 12447284 12456412 AACGTCAAGAAGGAGATCCA 59 12447223 12447242 CTCATTGTACAGCACATCCA 58 NA Rattus norvegicus 81 Rpl7l1 ENSRNOG00000016269 ENSRNOT00000021803 1 1 1 80 9 16510616 16511399 CGCATGGAAAGGATTCAAGG 60 16511440 16511460 GCCACTGAACAACTTCTTCAG 60 NA Rattus norvegicus 81 Elane ENSRNOG00000033685 ENSRNOT00000014981 1 1 1 80 7 12639506 12639637 AATGGCCGAAATTTCCAGTC 59 12639445 12639463 GAAGATTTGTCGAGTGGGC 59 NA Rattus norvegicus 81 Ppan ENSRNOG00000020608 ENSRNOT00000027973 1 1 1 80 8 21906887 21907097 TATACTTGAAGCTGATGCGAC 58 21907229 21907248 CAACATCCCGTATCAGTGTG 59 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 3 1 1 60 5 173488385 173488405 TGGATGTCTTACCAGACATGG 60 173488345 173488368 GCATTACCAGACAGTATTAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r80 ENSRNOG00000055298 ENSRNOT00000086274 1 1 1 80 1 65115390 65196407 AAGTACACAGATGCCAACCT 59 65196450 65196468 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Kcnab3 ENSRNOG00000008480 ENSRNOT00000011523 1 1 1 80 10 55929475 55929494 TCCTGACAGTAGCCTATGAG 58 55929537 55930837 GGGTTCTTTCAGCCTTTCC 59 NA Rattus norvegicus 81 Hip1r ENSRNOG00000001091 ENSRNOT00000034264 3 1 1 81 12 38031182 38031388 GAAGGATGACAGGGACCTC 59 38031119 38031141 CATCTTAATCTTCTCCAGCTCAG 59 NA Rattus norvegicus 81 Rac3 ENSRNOG00000048172 ENSRNOT00000073886 2 1 1 96 10 109905887 109905905 GGACACAATTGAACGGCTG 60 109905964 109906121 CAGGTACTTGACAGAACCGA 60 NA Rattus norvegicus 81 Elavl4 ENSRNOG00000023601 ENSRNOT00000035252 2 1 1 80 5 130009237 130010723 TTGATCAAGTCACAGGAGTC 57 130009176 130009194 CTTTGATGGCTTCTTCTGC 57 NA Rattus norvegicus 81 RGD1564102 ENSRNOG00000047758 ENSRNOT00000042604 1 1 1 90 14 525009 525755 GAGTCAAGTCCTAGGGTGC 60 525804 525827 GGAGAAGGAATTCAACTCATTCTG 60 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 2 2 2 80 1 48029792 48029813 AGAAGTCAGATAGAAAGCATGC 59 48029427 48029752 TATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000072518 1 1 2 81 8 52751892 52751912 GGCTGCTAATATTCACATCGT 59 52751955 52753021 GTGGTCCATAGCTTTGCAG 59 NA Rattus norvegicus 81 Pigh ENSRNOG00000010914 ENSRNOT00000014775 2 1 1 80 6 102266272 102268095 GGCTATTTACATGCAGAAGGT 59 102266212 102266232 ACTTGGGATATCTCATGTGGT 59 NA Rattus norvegicus 81 Tysnd1 ENSRNOG00000024839 ENSRNOT00000036719 1 1 1 80 20 31314233 31315653 AGCTACACCCAGGAATGTG 59 31315696 31315715 ACCACCGCTATGTCATATGG 60 NA Rattus norvegicus 81 Bcl9 ENSRNOG00000017516 ENSRNOT00000023548 2 1 1 80 2 199343810 199344555 ACTGAGATGGCAAATAAGGCT 60 199343750 199343771 GATGTTCTGGATGTGGAAAGAG 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 1 2 3 80 17 9838226 9838351 ATTGTCTGTTATGACCTCACC 58 9838393 9838411 CTCTTCTAAACTGCGGAGC 58 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 1 1 1 93 9 113728186 113728204 CTAGAAACCGTGAACCAGC 59 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 2 1 1 96 9 113728183 113728203 TTTCTAGAAACCGTGAACCAG 58 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 1 2 2 80 7 144058467 144058485 TTCCTTGAGGATGGCTCTG 59 144058529 144058663 GGTTTGTACTGGCCATCCT 60 NA Rattus norvegicus 81 Themis ENSRNOG00000014979 ENSRNOT00000020102 3 1 1 80 1 17337438 17337457 GTGAGGGTGATATTGGAGGT 59 17299904 17337397 CCATGACCTTAAAGAGACCTG 58 NA Rattus norvegicus 81 Gp9 ENSRNOG00000010015 ENSRNOT00000013282 3 1 1 111 4 119680604 119680622 CTCCTGTCAAGCAACACTG 59 119681462 119681481 GGTAGGTATCCAGCAGATGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822,ENSRNOT00000091488 1 2 2 80 6 55659828 55665607 CACTGTCTGGTAATAAAGACATCAC 60 55665645 55665663 TTCTTCCCACCGAGTTCAC 60 NA Rattus norvegicus 81 Hmgcs2 ENSRNOG00000019120 ENSRNOT00000026121 3 1 1 81 2 200476102 200477269 TTACCACAAGGTGAACTTCTC 58 200477312 200477330 CTCATCCACTCGTTCAAGG 58 NA Rattus norvegicus 81 Ulk4 ENSRNOG00000019271 ENSRNOT00000074423 3 1 1 80 8 129908748 129910082 CTCCTTTATCCAAGATGACAAGC 60 129908690 129908710 AGTCTGTGTAGATCAGCTCTC 59 NA Rattus norvegicus 81 Dcaf10 ENSRNOG00000011655 ENSRNOT00000016384 1 1 1 80 5 60931002 60931023 TAAGTCTTTAGAAGTAGGCAGC 58 60931061 60932632 CTTGATGAAGTGGTCAAATCTG 58 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 1 2 2 80 11 89034700 89034719 TGAAGGAGACACCATTTCCA 59 89034552 89034659 CCATGTTCATTAGTCTGGAGG 58 NA Rattus norvegicus 81 Oscar ENSRNOG00000055716 ENSRNOT00000090790 1 1 1 80 1 64186680 64186929 TGCTGGTAACAGATCAGCT 59 64186973 64186991 GGCTTACAGTGGTTTCTGG 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619,ENSRNOT00000021152 3 2 2 81 9 79523315 79523334 ACAGAGGCAGATGATGACAG 60 79494502 79523271 TTTGCCACTCCTCTGAGTC 59 NA Rattus norvegicus 81 Parp10 ENSRNOG00000004361 ENSRNOT00000006376 2 1 1 80 7 117298299 117298537 ATGAGACTGGAGGAAGTCC 58 117298237 117298256 CTCTTCCTCCATCTCCAGAG 59 NA Rattus norvegicus 81 Olr1029 ENSRNOG00000047357 ENSRNOT00000048223 1 1 1 60 7 7753187 7753208 TCTTAAACCATCAGTCAAGCAG 59 7753148 7753168 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360120 ENSRNOG00000047309 ENSRNOT00000075273 3 1 1 138 4 167219794 167219812 TACGGTGTCTTCTGCAAGG 60 167219911 167222134 TTCTTATGAATCTCTGCAAGCG 59 NA Rattus norvegicus 81 Stip1 ENSRNOG00000021164 ENSRNOT00000028743 1 1 1 80 1 222288642 222288660 AAGGAGACTACCAGAAGGC 58 222287676 222288599 TTCTTGAATAACCCTTGCCC 58 NA Rattus norvegicus 81 Cep83 ENSRNOG00000007859 ENSRNOT00000034639 2 1 1 80 7 35782926 35792923 TGAAATACAAGTCAGAGGTTGC 59 35792963 35792982 TTGTGGGATCAACACTAAGC 58 NA Rattus norvegicus 81 Glyatl2 ENSRNOG00000012387 ENSRNOT00000016593 3 1 1 80 1 229547292 229548598 GCAGATCCAAAGTTCACAGG 59 229548641 229548659 TTATGCTTGACCTTGCCCA 60 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 3 2 2 80 4 133120718 133121615 TGGAAGAAATAGGTGCTTCC 58 133120657 133120675 TCTGCTCAATTTCCCAGTC 58 NA Rattus norvegicus 81 Hbe2 ENSRNOG00000030784 ENSRNOT00000048484 3 1 1 80 1 169001712 169001733 CTGCTATCATAAGCATATGGGA 58 169001322 169001674 GATATACAATGAGGAGCCTTCC 58 NA Rattus norvegicus 81 AABR07011700.1 ENSRNOG00000057979 ENSRNOT00000071111 1 1 1 60 2 166475564 166475582 AACACATGGAAACAACCCT 58 166475604 166475624 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 1 1 3 81 12 21749679 21756469 TGATGACGACAGTGGTTCC 60 21745538 21745558 TAGGTGTTTCCAGAACAGGAC 60 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 2 2 2 80 19 61441968 61449961 AGATAACAGATTACCCTTGCTC 58 61450001 61450020 GGTTGGATGCTGTAATCTGG 59 NA Rattus norvegicus 81 Rps23 ENSRNOG00000016580 ENSRNOT00000022348 3 1 1 80 2 19823269 19823691 CAAGATGGGTAAGTGTCGTG 59 19823732 19823752 TGTTTATCATGCCACTTCTGG 59 NA InUTR Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000046368 1 1 2 60 2 95079019 95079037 AAAGTGAACATGAACGCCA 58 95080565 95080583 TTTCAGGAAGAACCCACAC 58 NA DesignNoJunction Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 3 2 2 80 1 57719640 57719662 GGACATGAGGGTTTAGAATTGAG 59 57719699 57720759 ACTATTTCCTTTGCACCAAGAG 59 NA Rattus norvegicus 81 Hyal3 ENSRNOG00000016093 ENSRNOT00000021590 2 1 1 80 8 116341750 116341874 TGTTTCTAGCTCTGAGGAAGAG 59 116341914 116341933 GTCACGTTGATCACATAGGG 59 NA Rattus norvegicus 81 LOC100912538 ENSRNOG00000050877 ENSRNOT00000074157 2 1 1 81 2 9683773 9685322 GTTTAGCTCTGAGAGGTGAG 58 9685364 9685384 TCTTGCTTCTGTTCTTCAGAG 58 NA Rattus norvegicus 81 Slc17a5 ENSRNOG00000009330 ENSRNOT00000012474 3 1 1 80 8 85903554 85906808 AGGTTCAATGTTCAAGAGAACG 59 85903495 85903514 TTGACCACAGACAATCATGC 59 NA Rattus norvegicus 81 LOC100909620 ENSRNOG00000049821 ENSRNOT00000075282 1 1 1 80 1 81556177 81556197 AAGTCCAACCTTGTTCTATGC 59 81555838 81556135 GATACTGAGGCTACCTCCC 58 NA Rattus norvegicus 81 Lysmd3 ENSRNOG00000016298 ENSRNOT00000021818 2 1 1 96 2 9529916 9529935 AGACAGACTTGATGACATCG 58 9529994 9531649 ATCTGCTACCGTACAACAG 57 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 3 1 1 150 13 60436533 60441102 AAAGAAAGAATGACGTCGAGG 59 60441214 60441232 TCTTCTCCTCCACTGAAGC 59 NA InUTR Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 2 1 1 60 5 58198206 58198227 TAAGTCTGGGAAGAAAGGAAGG 60 58198084 58198186 GGAGTCTGTCTGTTCAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 3 2 2 83 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567344 49567363 AGTAGTCGTTGTTGACATGC 59 NA Rattus norvegicus 81 Ppp1r3c ENSRNOG00000018494 ENSRNOT00000024941 2 1 1 60 1 255374393 255374411 ATTTGCTTGGCACATTCAC 58 255374351 255374370 GCTGAAGACCATTGTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir187 ENSRNOG00000035521 ENSRNOT00000053644 1 1 1 60 18 16390569 16390588 ATCCTCAGGCTACAACACAG 60 16390528 16390546 CTGCAACACAAGACACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550816 ENSRNOG00000040058 ENSRNOT00000061599 3 1 1 60 11 29008341 29008359 CTATGGCTGTGGCTATGGA 59 29008382 29008401 CCTTCTACAACATAGTGGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6b ENSRNOG00000026936 ENSRNOT00000037191 3 1 1 144 20 5056001 5056019 GGCTAGAGCTGCTACTGAG 59 5055722 5055893 GAATACTCGGATCCGTGGG 60 NA Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 1 1 1 60 18 47660362 47660380 ACAGTGATTGTGGAATCCC 57 47660404 47660422 TTGTTTGCGGTCATTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 3 1 1 60 18 47660603 47660621 TGTCGAGGAAAGTGAAGGG 59 47660644 47660663 GCCCATTGACTTCATCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584,ENSRNOT00000091216,ENSRNOT00000083458 1 5 5 80 10 56194213 56194328 ATGATATTCTGCCCACCAC 57 56194372 56194390 ACAACTCTGCAACATCCTG 58 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000076170 2 1 2 60 1 85491022 85491040 CTCCAAGAAGTCCCTTGTC 58 85491063 85491082 GACAGGCACATTCAAAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360499 ENSRNOG00000039562 ENSRNOT00000060645 2 1 1 60 11 47090267 47090286 CCATGAAGAAGGTGGTTCAG 59 47090308 47090327 GAAACCTTCACACGGTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk6 ENSRNOG00000009258 ENSRNOT00000012597 3 1 1 80 4 27786303 27787618 AAGACCTCCTTCTGAAATGC 58 27786242 27786260 GGAAGTACGGGTGATTCAG 58 NA Rattus norvegicus 81 L3mbtl2 ENSRNOG00000024743 ENSRNOT00000034998 1 1 1 80 7 122912128 122912469 TTCAAGAAGGTCCGAGCTG 60 122912513 122912531 ATTCAGAGGGTCAATGGCC 60 NA Rattus norvegicus 81 Tecpr2 ENSRNOG00000021904 ENSRNOT00000030864 2 1 1 80 6 135401965 135402478 GTTTCACAGTGACCTCATCAG 59 135402520 135402538 TGAACGTCTTTGTCAGTCG 58 NA Rattus norvegicus 81 Tecpr2 ENSRNOG00000021904 ENSRNOT00000030864 3 1 1 81 6 135379114 135379133 GGGTTAACAAGAGTGGTGTG 59 135379173 135380636 CAGTAAGTTCCTATGAGACTTCC 58 NA Rattus norvegicus 81 Rn60_10_0700.4 ENSRNOG00000051029 ENSRNOT00000076584 1 1 1 60 10 70331057 70331076 TCTGAATAGGTTTGACACGG 58 70331098 70331117 TAATCTCCATTCCAGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 3 2 2 81 2 12102691 12104240 TTTAGCTCTGAGAGGTGAGC 59 12104281 12104302 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 LOC499715 ENSRNOG00000033088 ENSRNOT00000043369 1 1 1 80 2 242801861 242801880 ACCCAGATGTTCAGGAAGTC 60 242798522 242801818 CGATGATGCTGAAGTCCAC 59 NA Rattus norvegicus 81 Rnd2 ENSRNOG00000020698 ENSRNOT00000028089 3 1 1 80 10 89378192 89378210 CAGATTCTGATGCTGTGCT 58 89378254 89379024 CTCCTTGCCACTTCTTGAG 58 NA Rattus norvegicus 81 Nop16 ENSRNOG00000017284 ENSRNOT00000023320 3 1 1 80 17 10560166 10561664 TCCGTAAGAGGAAGGTAAAGG 59 10561706 10561724 TAACCACATAGGGCTTCCG 59 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 3 2 2 80 5 134656581 134663844 CACATTTCTGAACGTTGCC 58 134663886 134663906 TAGATCTCCTTCCGATCAGTG 59 NA Rattus norvegicus 81 LOC100909494 ENSRNOG00000012973 ENSRNOT00000066242 2 1 1 80 10 87708417 87708436 GTTCTAGCTGTTGTGGATCC 58 87708479 87708554 TAGATCCACAGCAGGAAGG 59 NA Rattus norvegicus 81 Zfp367 ENSRNOG00000027234 ENSRNOT00000036287 2 1 1 83 17 1665501 1671450 ACCTCAAGGATGGAATCCG 59 1665436 1665455 TGCTAGATGAATGCTCTCCT 58 NA Rattus norvegicus 81 LOC689599 ENSRNOG00000012115 ENSRNOT00000016155 3 1 1 80 9 114784636 114784655 GTCAGAGCAGAAGTGAAGGA 60 114754970 114784593 CAGTTGGAAGTTCCCTTCG 59 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 2 2 2 80 16 6978753 6978774 AGAACAATTCCAAGTTGCTGAG 60 6979048 6979313 AAATGCCGTTGAACTGCTG 60 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596,ENSRNOT00000005479 2 3 3 80 10 11081974 11081992 ACCAGATACTGGGAGTACC 58 11080335 11081933 GATGATATTTCTTGGCAAGCTG 58 NA Rattus norvegicus 81 Ifitm6 ENSRNOG00000036645 ENSRNOT00000054875 3 1 1 80 1 213817434 213818076 CTACTCTGTGAAGTCCAGGG 59 213817373 213817392 AGTTTCTTGGCAGTTGAAGC 59 NA Rattus norvegicus 81 Mt2A ENSRNOG00000043098 ENSRNOT00000067391 2 1 1 100 19 11308716 11308735 GCTCCTAGAACTCTACAGCG 60 11308372 11308653 CAGGAGCAGGATCCATCTG 60 NA InUTR Rattus norvegicus 81 Agbl2 ENSRNOG00000008467 ENSRNOT00000011467 3 1 1 80 3 79628983 79629004 ACAACACTCTATTGTTCGAGTC 59 79629040 79631698 GTTCGTACTCATAAATGCCTACTC 60 NA Rattus norvegicus 81 AABR07031691.1 ENSRNOG00000060281 ENSRNOT00000090569 3 1 1 60 18 27205967 27205985 TCCCAATGTGGATGATGGA 58 27205925 27205945 AATAGCTTCCAACCCTTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385,ENSRNOT00000067528 1 2 2 80 10 55536476 55536494 CCTAAGCCAGACAGAGGAG 59 55536316 55536433 CGCTCAATGATCTTGCTCAC 60 NA Rattus norvegicus 81 Atxn7l3b ENSRNOG00000059744 ENSRNOT00000088732 1 1 1 60 7 55604061 55604081 GCCCAGGAGATCTATGTAGAC 59 55604021 55604039 GCACCTCAAAGCAGAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310166 ENSRNOG00000003143 ENSRNOT00000004193 1 1 1 82 10 72486285 72488132 AAGCCACTAGAGAAGGTGG 59 72488178 72488196 TGACGGACCAGAACATCTC 59 NA Rattus norvegicus 81 Nol8 ENSRNOG00000046968 ENSRNOT00000073035 2 1 1 80 17 14568520 14568539 GGTTCCTGAGAAAGAGACCA 59 14568119 14568480 CTCCAGAATAAGTCAGAACCAC 59 NA Rattus norvegicus 81 Ccdc151 ENSRNOG00000013263 ENSRNOT00000017820 2 1 1 80 8 23001275 23001448 GGACAAGTTCTTTGACGAAGAG 60 23001216 23001234 TGGGAACGGATCTTGAAGG 59 NA Rattus norvegicus 81 Ifi35 ENSRNOG00000020678 ENSRNOT00000028067 1 1 1 82 10 89365668 89365782 TGACCAACATCCAGGTGTC 60 89365827 89365846 CTCACTCAGCCTAAGTCCAG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 1 3 3 80 5 134203996 134205013 CAGTATAATGCTAGACAAATGGGAG 60 134203940 134203961 GTCATCAAGGAGACATAGTGGA 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000088379 2 1 2 131 4 122131437 122131455 CATCTTCAGGGTACCAGCC 60 122131548 122178604 CATAGTTCTTGAGCTGCAGAC 59 NA Rattus norvegicus 81 Ccdc105 ENSRNOG00000007375 ENSRNOT00000009833 1 1 1 80 7 13917947 13917966 AACAGGAGATAAGCGATCGT 59 13918006 13918134 TGGTCATTCTTTCCTTCAACTC 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 1 3 3 80 13 56616865 56616883 ACCCTGTCTGAAGTGTCTG 59 56616922 56618537 CATCCCTTTAGATTCTCTTCTCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 2 1 18 64 1 43508706 43508724 GTCCGTCAGAACACTAGGG 60 43508750 43518467 TTCTGGTGGTTAGTTCGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Psma1 ENSRNOG00000011745 ENSRNOT00000015946 1 1 1 80 1 183739028 183739047 AGACCCAGATACCAACACAG 59 183738512 183738985 GGCCCATGTCATCATAACC 58 NA Rattus norvegicus 81 AABR07065640.1 ENSRNOG00000047622 ENSRNOT00000071078 1 1 1 116 6 138506945 138506963 AATCCCGACTGAGCATCAG 60 138506753 138506867 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Lrrtm4 ENSRNOG00000021938 ENSRNOT00000030588 2 1 1 117 4 110700402 110702286 ACAAAGGATGGGTTTCCGT 60 110702367 110702385 GTTCTTTGGGCAAGCTCTC 59 NA InUTR Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 2 2 2 108 17 10758182 10758749 CAGCAGATTCGAGATAAGTATGG 59 10758096 10758114 CCTTCTTGGGTCTGGTCAG 60 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000046192 ENSRNOT00000016013 3 1 1 80 5 134892889 134895227 CTGTTGCCGTAACCTAGCT 60 134892827 134892846 GGCACATAACTGTGAAGGAC 59 NA Rattus norvegicus 81 Diablo ENSRNOG00000029197 ENSRNOT00000047861 1 1 1 80 12 38496416 38496549 GAGTTGAGATGACTTCAAAGC 57 38496591 38496609 CCATCTCTGAAAGGCTGAC 58 NA Rattus norvegicus 81 LOC100910224 ENSRNOG00000050309 ENSRNOT00000075691 2 1 1 60 2 115239296 115239316 GGATTAACAAAGCAGCCTGAG 60 115239256 115239276 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctdsp2 ENSRNOG00000047598 ENSRNOT00000075371 1 1 1 80 7 70285563 70285582 AGAGCAAGATCAAGGAAGGA 59 70285624 70286548 TTGTTGATCGGCTTAAAGGA 58 NA Rattus norvegicus 81 Ctdsp2 ENSRNOG00000047598 ENSRNOT00000075371 2 1 1 80 7 70286585 70287632 CACGCACCAGGTATATGTG 58 70287674 70287694 AGAACACATTCAAAGAGCTCC 59 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000,ENSRNOT00000022801 3 2 2 119 5 59021757 59021775 ATTCAGCTCGTAGAGGAGG 58 59021553 59021677 CTCAATGACCTTCATTCCTCTC 59 NA Rattus norvegicus 81 Yipf3 ENSRNOG00000018998 ENSRNOT00000025769 2 1 1 80 9 17119555 17119714 CAGGTAGCAGATCAGATGTG 58 17119494 17119512 CAGGATGTCGATATTGGCA 57 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 82 18 56312642 56312660 CTATGTTGCCTCTGTCACC 58 56312507 56312596 AAAGGCAAACTGGCTATCG 59 NA Rattus norvegicus 81 Gng3 ENSRNOG00000019570 ENSRNOT00000026539 3 1 1 80 1 225035040 225035059 ACTATGAGTATTGGCCAAGC 58 225034709 225034997 CTTGGACACCTTTATCCGG 58 NA Rattus norvegicus 81 LOC100910410 ENSRNOG00000045544 ENSRNOT00000074821 2 1 1 80 9 16825899 16826320 TCTTTACTGCCTTGTGCTG 58 16826363 16826382 CCAGTTATGCAAGGACACAG 59 NA Rattus norvegicus 81 Myo1d ENSRNOG00000003276 ENSRNOT00000004609 3 1 1 80 10 68052974 68055299 CATTCTTTCTATCAGCTACTTCAGG 60 68052918 68052939 GTAGGATGAGAGTGATTTCTGC 59 NA Rattus norvegicus 81 Neil3 ENSRNOG00000011688 ENSRNOT00000015623 1 1 1 80 16 41121060 41125168 ATGTTCAAATATGCTCACTGCC 60 41126384 41126403 CTGAGTCGGTAAAGCAATCC 59 NA Rattus norvegicus 81 Anapc1 ENSRNOG00000016965 ENSRNOT00000055875 3 1 1 80 3 121175838 121176531 CTTGCTTAGGACACTTGCTC 59 121175777 121175795 GGAACATTGCTGTCAACCC 60 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767,ENSRNOT00000086682 3 2 2 80 9 112363367 112363387 CTGCAGTACAGGAACTATGAG 58 112363427 112367378 AGTTCCAAACTGGATCTTCAC 58 NA Rattus norvegicus 81 Olr1406 ENSRNOG00000029930 ENSRNOT00000048759 3 1 1 60 10 36485625 36485645 AGCTACAGAATTTCTCCTCCT 58 36485665 36485685 GAACATTCCAAAGACAACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac10 ENSRNOG00000031915 ENSRNOT00000055865 1 1 1 80 7 130104986 130105005 GCTTTGCCCATCTTACACAG 60 130104620 130104943 GATAGACTCCAGGGCACTC 59 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050576 ENSRNOT00000072148 1 1 1 60 5 121308448 121308466 TCGTTCTAGACCAACTGCC 59 121308488 121308508 TCAATTCCGTCATACTTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox7c ENSRNOG00000030237 ENSRNOT00000051895 1 1 1 106 2 14701731 14701749 GTATCCGGAGGTTCACCAC 60 14700897 14700915 CATAAGCAGTAACCGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC690821 ENSRNOG00000049623 ENSRNOT00000052197 1 1 1 81 8 20780913 20781071 ATGGACCTCAAAGGGTGTC 59 20781114 20781134 CTGAGAGGCTCATAAGATGGA 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 2 2 2 80 2 250716324 250716705 GCAGACGAGGTAATCACTG 58 250716262 250716280 GCCCTTCTGATTTCCTCTC 58 NA Rattus norvegicus 81 Hsf1 ENSRNOG00000021732 ENSRNOT00000050108 3 1 1 82 7 117562278 117562403 CATACTCAGCTCCATCTCCAG 60 117562447 117562465 GGAGATTATGGGCCCAGAG 59 NA Rattus norvegicus 81 Lztr1 ENSRNOG00000001870 ENSRNOT00000002554 1 1 1 80 11 87395092 87395113 GATTGTAGAGATTGTTCGTCGG 59 87395153 87395831 AAAGATGTGCCAATGTCCAC 59 NA Rattus norvegicus 81 Cnot4 ENSRNOG00000010795 ENSRNOT00000040969 1 1 1 80 4 62591367 62592777 TTCACATCAGAAACAATCCCAG 59 62591308 62591328 CTCTGGCTGTTTAGAAGAACC 59 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 3 1 1 119 14 43831760 43833899 CATCAAACCTGGCACAGTG 60 43833980 43834000 CTGATCATGTGTTCCATTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 3 2 2 80 6 133578068 133578539 GACAATGTCTGCAGGTGTG 59 133578583 133578601 TCCATTAACACAGCCAGGG 60 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 3 2 2 81 5 135661780 135661915 CAACCAGATAAGGGTGACAG 58 135661718 135661741 GTTCTATAACATACTCCTCCATGC 59 NA Rattus norvegicus 81 Golga1 ENSRNOG00000014493 ENSRNOT00000019703 3 1 1 80 3 23316087 23316387 AGGAGCCACTAGTCATCTC 58 23316025 23316043 CCTCACCATTTGGAGTTCC 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259,ENSRNOT00000083594 1 2 2 80 11 33964983 33965665 ATCTTCTAGTTGAGGCTCTGG 59 33965707 33965725 GATATTCATGGTGGCGCTC 59 NA Rattus norvegicus 81 LOC364556 ENSRNOG00000032995 ENSRNOT00000049187 2 1 1 80 16 28155190 28157463 GCTCATACCTAGCAGATCCC 60 28155129 28155150 TAGATGCTTCAGTCCTACTCAG 59 NA Rattus norvegicus 81 Lap3 ENSRNOG00000003289 ENSRNOT00000004770 1 1 1 80 14 70110641 70111856 TTTGACAGCGGAGGTATCTC 60 70110580 70110598 TATTGTTGCTGCTCCTCCC 60 NA Rattus norvegicus 81 Lap3 ENSRNOG00000003289 ENSRNOT00000004770 3 1 1 82 14 70106284 70108339 CTTTAACAGGTGCCATGGA 58 70106220 70106238 TAGTTTGTTCCACAGCCAG 58 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 3 2 2 80 10 90379861 90380003 TCTCTGAGGGTGTATCTTGTG 59 90380045 90380063 AGCAGGATTTCCCATCCAC 60 NA Rattus norvegicus 81 LOC100910472 ENSRNOG00000004484 ENSRNOT00000005925 2 1 1 94 7 118502748 118503109 AATGCAACTGTGGTTAGGAC 59 118503166 118503184 ATGGTGCAAGTATGGAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nhlh2 ENSRNOG00000054375 ENSRNOT00000083374 3 1 1 116 2 204427682 204427700 CTCTCCTTCCTCTGCTTCC 59 204427780 204428203 CACTCTTAGGGCTTGTGGT 59 NA InUTR Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331,ENSRNOT00000088724,ENSRNOT00000088649,ENSRNOT00000090174 2 4 4 80 13 70253606 70253625 GAAAGCATGAAGGATGCCTG 60 70253668 70254928 ACCTTGATCACCCACTGTG 60 NA Rattus norvegicus 81 Kif22 ENSRNOG00000020281 ENSRNOT00000027525 1 1 1 80 1 198463052 198463070 CTTCCTCCTGTAGTGGCTC 59 198462634 198463008 CTGACTGCTTCTGAATCCG 58 NA Rattus norvegicus 81 RGD1565159 ENSRNOG00000048753 ENSRNOT00000049363 2 1 1 60 2 53717939 53717958 AAGAGTCTACAATGTCACCC 57 53717898 53717919 GCCTTTAACTTGCTTGTTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498675 ENSRNOG00000046155 ENSRNOT00000075271 3 1 1 83 8 117171346 117171365 CATTCTGGCACGTGAAAGAC 60 117171407 117172955 TCCATACCCTTCCTTAAACTCTC 59 NA Rattus norvegicus 81 AABR07027098.1 ENSRNOG00000048372 ENSRNOT00000071112 2 1 1 80 17 14370714 14370961 CATCTGTGATTCCAAGGCTG 59 14370653 14370673 GATGCACTTTCTACCCTTGTC 59 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 3 1 1 60 20 5078522 5078544 GCTACTTGGTAAAGGACTTAGGA 60 5078563 5078582 GGTATCAACTACTTGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201,ENSRNOT00000084049 2 2 2 84 4 117261660 117261808 CTGTCACCTACAGGAGTGC 60 117261594 117261612 AGGGAGACAATGTCTCTGC 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 3 1 1 82 1 76345678 76345699 CAATAACATTGTTGCCAACTCC 59 76338597 76345641 CTTGGTATCCTTACCATTCATTCTC 60 NA Rattus norvegicus 81 Baiap3 ENSRNOG00000017893 ENSRNOT00000024072 2 1 1 80 10 14604612 14604632 CTTGCAGACATCATCTACGAG 59 14604450 14604571 GTCCACCTTAAGGATACCGT 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000022572 ENSRNOT00000032563 2 1 1 81 18 71607622 71608343 TATGCAGCAGTTACAGGAC 57 71607397 71607415 ATCCAGGTCAAAGTTGAGG 57 NA Rattus norvegicus 81 Mir141 ENSRNOG00000035577 ENSRNOT00000053700 3 1 1 60 4 157236413 157236432 TCTGAGTCCATCTTCCAGTG 59 157236372 157236391 AGACAGTGTTAGGAGCTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566099 ENSRNOG00000043374 ENSRNOT00000066601 1 1 1 80 13 55883301 55883320 ACTGGCTATGTGGTTCTCAC 60 55881721 55883259 ATATGGACAGTGTCTGCAGG 60 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 2 1 2 85 1 85499565 85499701 GCCTTCGGTACATTCTACTG 58 85499847 85499865 AACCTGGGTAGCTCTTTCC 59 NA Rattus norvegicus 81 Tgfa ENSRNOG00000016182 ENSRNOT00000057441 2 1 1 150 4 118040386 118040405 GCTGTCCTCATTATCACCTG 58 118041817 118042326 TTCAGACCACTGTCTCAGAG 59 NA Rattus norvegicus 81 Obfc1 ENSRNOG00000020376 ENSRNOT00000027614 1 1 1 80 1 267295415 267295434 CAGAGCTCTACAAGAAGGTG 58 267293339 267295375 TGTCTTTACTGTTTAGTGCCTC 58 NA Rattus norvegicus 81 Rn60_1_1144.1 ENSRNOG00000028324 ENSRNOT00000030707 2 1 1 60 1 113346513 113346532 TCCCACAGTATATGCCTGAG 59 113346472 113346490 AAGGAGAGGTTGATGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042384.1 ENSRNOG00000056271 ENSRNOT00000089929 2 1 1 96 X 154548226 154548244 CAGGAATTTCACACGGCTG 60 154548300 154548472 CTGGTTTCTTAGTTACCTTGACC 59 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 3 1 1 60 8 41253299 41253319 ACATTCTTGGTTTCCATGCTG 60 41253340 41253359 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dync1li1 ENSRNOG00000010434 ENSRNOT00000014532 3 1 1 80 8 122760425 122760445 TAGAGGAGTACAAGAAGGGAC 58 122760484 122761166 ATCTTGTTTGATCATCCCTGTC 59 NA Rattus norvegicus 81 Pigy ENSRNOG00000052134 ENSRNOT00000078067 3 1 1 100 8 23168015 23168774 GCCAGTGAATGTAAGGAATCC 59 23168835 23168854 TTCTGATCCAATCCACCACC 60 NA InUTR Rattus norvegicus 81 Ms4a2 ENSRNOG00000020993 ENSRNOT00000028491 1 1 1 80 1 227960615 227961257 ACTGTATCTGGTGAGAGGC 59 227960553 227960572 AGAATCAATATGGCGATCCC 58 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 1 2 2 80 7 41186203 41189729 CCTTGCTTCTTTCAGGTACTC 59 41189770 41189789 CAGTTTGAGAGTTCACACCT 58 NA Rattus norvegicus 81 Phtf2 ENSRNOG00000013517 ENSRNOT00000066739 3 1 1 80 4 10912707 10912727 AGACAGATGTGGGAAATCCTC 60 10912765 10920543 GTAAATGAGTCTGATGGAAAGGG 59 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000015365 ENSRNOT00000020669 2 1 1 80 9 88447568 88448711 AAGGACAACCAGGTAGAAGAG 59 88448753 88448771 CAGGGACTCCAGATCTGTC 59 NA Rattus norvegicus 81 Insm2 ENSRNOG00000007754 ENSRNOT00000010188 2 1 1 60 6 76384393 76384411 CCTACAGGCTCTAGTGCAC 60 76384435 76384453 AATCACCTCGGAGTAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sp4 ENSRNOG00000005472 ENSRNOT00000007625 2 1 1 97 6 146152964 146193121 TCACTAGTGTTGCAGGTCAG 60 146152886 146152905 ATTAGCGATCCCTCCAACTG 60 NA Rattus norvegicus 81 Ube2k ENSRNOG00000027088 ENSRNOT00000030485 3 1 1 104 14 44323290 44323308 GAAATAGCAGGACCTCCAG 57 44305850 44316667 GATAAACCGGACCTTAGGG 57 NA Rattus norvegicus 81 Papd4 ENSRNOG00000012099 ENSRNOT00000016135 1 1 1 80 2 22751401 22755545 GCTACAGAATTTGACTGGAATACTC 60 22751345 22751365 CCATTCCATATCATCTGGCCT 60 NA Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000073905 3 1 2 62 7 120144797 120144815 GCATTGCAGACTTGATGGA 59 120144843 120144861 CTACGGGATCAGGGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Plxna3 ENSRNOG00000060464 ENSRNOT00000083148 1 1 1 80 X 156368117 156368135 GTGCCCAAACAAGTGTCTG 60 156367779 156368074 GAGCAAACTCTCATAGCGAC 59 NA Rattus norvegicus 81 RGD1562381 ENSRNOG00000029835 ENSRNOT00000040565 2 1 1 60 6 99575921 99575941 GATAACTATGTTCCTGAGGGC 58 99575881 99575900 TGTCAGGATCTACCTCAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-196b-1 ENSRNOG00000049663 ENSRNOT00000071351 2 1 1 60 4 82284900 82284919 AGGTAGTTTCCTGTTGTTGG 58 82284859 82284877 GTAATGAAGGCAGTGTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1555 ENSRNOG00000058137 ENSRNOT00000086976 1 1 1 60 11 43594424 43594443 TTATCATCCACAGTGACACC 57 43594383 43594401 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000042977 2 1 2 83 1 280387118 280396914 TCAGCACAGTGGGTTATGG 60 280396957 280396979 GGATTCCAAAGAGTGCATATAGC 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000042977 3 1 2 83 1 280383829 280383847 GAAGCAGAGGAGAACCCTG 60 280383894 280387011 ACCTTCAACCACTGTCAGG 60 NA Rattus norvegicus 81 Mogs ENSRNOG00000008648 ENSRNOT00000011521 2 1 1 82 4 113949597 113949615 GTGAACTTGGTGACTTCCG 59 113949661 113949825 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 3 2 2 80 8 118622604 118622623 TGACTTCTTCCTCCAGATGC 60 118622665 118622818 TTGTTCAGGTCTGCTAGCTC 60 NA Rattus norvegicus 81 LOC689600 ENSRNOG00000057651 ENSRNOT00000084905 1 1 1 96 X 153456906 153456924 TACAGGAATTTCACACGGC 58 153456678 153456849 GGTTTCTTAGTTACCTTGACCT 58 NA Rattus norvegicus 81 Nup85 ENSRNOG00000003673 ENSRNOT00000005035 1 1 1 80 10 104134440 104134458 TTCCTCTCAACACAGAGCA 59 104134501 104135027 TGCTTCCAACTTGTTCAGTC 59 NA Rattus norvegicus 81 LOC298795 ENSRNOG00000004188 ENSRNOT00000005553 1 1 1 60 6 23757457 23757475 CAGAAGATCAACGAGGAGG 57 23757499 23757517 TCTCCCGGTACTCTTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 1 2 2 80 4 99995019 99998708 GGGCCATGATAAGAATATCCC 58 99998750 99998768 GCCAGGCTAACTTCATCAC 59 NA Rattus norvegicus 81 Poc1b ENSRNOG00000024450 ENSRNOT00000031905 1 1 1 80 7 41305138 41322532 ACAAATTGCTACTGCTTCCT 58 41322575 41322593 CCCACGTATCTGTAAGCTC 57 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 3 1 1 87 6 141487858 141488224 TGATGGCACTAACTACAGGG 59 141487790 141487808 AACTTGACTGAGGTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Nfu1 ENSRNOG00000018410 ENSRNOT00000024884 1 1 1 81 4 118820121 118820139 GAAAGCCGGTTCTTGAGAC 59 118820184 118823680 AATAACTGCCTGGCCAGAG 60 NA Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 2 1 1 68 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095098 18095118 GGGAAACAGTAATTGAAGAGC 57 NA DesignNoJunction Rattus norvegicus 81 Nrip1 ENSRNOG00000001585 ENSRNOT00000002152 1 1 1 92 11 14700937 14700955 GACTCCGGTGACATCAGAG 60 14665754 14700883 AGAACAGTATCGTCTGTCTCG 59 NA InUTR Rattus norvegicus 81 Mab21l1 ENSRNOG00000032941 ENSRNOT00000040631 1 1 1 60 2 145175780 145175799 TGTAGTAAAGATGGTGGCTG 57 145175819 145175840 CACATACCTATCTCGGATTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817,ENSRNOT00000012222 3 2 2 81 4 7304783 7304801 CTGCTGTAAAGCAGAGGAG 58 7304056 7304740 CAAGACCATACAGTTGAAAGC 58 NA Rattus norvegicus 81 Pdcd1 ENSRNOG00000049797 ENSRNOT00000074915 2 1 1 82 9 101309913 101319780 GTGGCTTCTAGAGGTCCTC 59 101309849 101309867 CATTTGCTCCCTCTGACAC 59 NA Rattus norvegicus 81 Nmrk1 ENSRNOG00000012665 ENSRNOT00000016930 1 1 1 80 1 234732725 234732878 CCTGCTCTTTAATTATAAGCCTCTG 60 234732669 234732693 CTCTTACATTCTTCATATGGAACGG 60 NA Rattus norvegicus 81 Cd274 ENSRNOG00000016112 ENSRNOT00000034421 3 1 1 80 1 247526572 247532982 AAAGTCAACGCTCCATACC 58 247533025 247533044 CTGGCACATTAGTTCATGCT 59 NA Rattus norvegicus 81 Tmem30b ENSRNOG00000008046 ENSRNOT00000010923 2 1 1 60 6 96441750 96441769 AACATCACCTACAACTACCC 57 96441709 96441730 TGCTAAGGATGATAAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064590.1 ENSRNOG00000050408 ENSRNOT00000072471 2 1 1 60 6 86160975 86160993 AACACATGGAAACAACCCT 58 86160933 86160953 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064590.1 ENSRNOG00000050408 ENSRNOT00000072471 3 1 1 60 6 86160974 86160992 ACACATGGAAACAACCCTG 58 86160932 86160953 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366,ENSRNOT00000083587 1 2 2 80 1 116660498 116674186 TGTTGTGATTAGGGAGTTCTG 58 116674228 116674246 CCTGTTGTAAACTGCAGGA 58 NA Rattus norvegicus 81 Fam110d ENSRNOG00000016491 ENSRNOT00000022130 2 1 1 146 5 152473808 152473826 ACTGAAACTCAGCGTCTCC 60 152471928 152471946 GATGGTGTAGTGGGTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544,ENSRNOT00000073286 3 2 2 81 8 85795740 85797286 GATCAAAGATACAGATGTCACCG 59 85795681 85795701 TTCTTCAGGGTTCCTGATGAG 60 NA Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 3 2 2 80 10 87298261 87298374 GGTTCAATGAGAAGAGCAAGG 59 87298201 87298222 TGATTTCACTCTTATGGCTGGA 60 NA Rattus norvegicus 81 RGD1559639 ENSRNOG00000038735 ENSRNOT00000059150 1 1 1 60 6 91113837 91113855 CGTGAAGATGACCGATGAC 58 91113795 91113813 CACCAAGAAGTTGACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559639 ENSRNOG00000038735 ENSRNOT00000059150 3 1 1 60 6 91113833 91113852 GAAGATGACCGATGACAAGC 59 91113792 91113811 GGACACCAAGAAGTTGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlk2 ENSRNOG00000018949 ENSRNOT00000025638 2 1 1 94 9 17062803 17063357 TTCTGTGACAAAGATGAGCAC 59 17062729 17062747 ACACAGTGGTACTCACCAC 59 NA Rattus norvegicus 81 Dennd2a ENSRNOG00000026748 ENSRNOT00000034549 1 1 1 80 4 67287338 67299959 TGACCACAGAAAGTCCTATGAG 60 67287279 67287297 GTCTGTGCATACCAGTCCA 59 NA Rattus norvegicus 81 Agfg1 ENSRNOG00000015619 ENSRNOT00000021309 3 1 1 80 9 88650281 88650300 GAGTTAGACAGCGTGTTCAG 59 88650343 88653354 AAAGACACTGCTGCTAGCA 60 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 2 2 2 80 9 20215436 20215455 AAGTTAGACGAAAGGGAAGC 58 20215497 20215932 GTCCTTCACATTATCTGCGA 58 NA Rattus norvegicus 81 Ebp ENSRNOG00000004903 ENSRNOT00000007015 1 1 1 80 X 15051856 15054185 CCCAACTCTGGAAAGAATATTCC 59 15054332 15054351 TGACACTCTCCATACAGACG 59 NA Rattus norvegicus 81 Lipe ENSRNOG00000020546 ENSRNOT00000027910 1 1 1 87 1 82257058 82265668 CTACTGGGATACAGCCTCG 59 82256989 82257007 CATGTTGTCTTCTGCGAGC 60 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 1 2 2 83 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Ankrd34b ENSRNOG00000040166 ENSRNOT00000061812 1 1 1 80 2 22006793 22013349 CCACATCTCAGGTATTGATTTCTG 60 22013385 22013406 TTGATCAAGGAATTTCCATCCG 59 NA InUTR Rattus norvegicus 81 Cpsf7 ENSRNOG00000020668 ENSRNOT00000028074 3 1 1 80 1 226580060 226580084 CTCTATAGGAGTCTATGATGTGGTG 60 226580120 226580511 ACCTCAGCATACCCTTTAGAC 59 NA Rattus norvegicus 81 Mir6324 ENSRNOG00000046478 ENSRNOT00000075626 1 1 1 60 11 36383571 36383589 CAACTGAGTCAGTAGGCCA 59 36383529 36383547 AGGGTCAGTGAAATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir301b ENSRNOG00000040402 ENSRNOT00000062155 2 1 1 60 11 88129439 88129459 TGACTAGGTTGCACTACTGTG 60 88129479 88129499 CCCAGATGCTTTGACAATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trib2 ENSRNOG00000004110 ENSRNOT00000005774 3 1 1 152 6 41034347 41039404 GGTGTGCAAGGTGTTTGAG 60 41034213 41034231 TGCATGTCTCCATAGCTCC 59 NA InUTR Rattus norvegicus 81 Gpi ENSRNOG00000023150 ENSRNOT00000032613 2 1 1 80 1 90079771 90081301 TTATAATCGCCTCCAAGACCT 59 90079711 90079729 CAGCTTGGAGAAACCACTC 59 NA Rattus norvegicus 81 Orc4 ENSRNOG00000005021 ENSRNOT00000006937 2 1 1 81 3 33058968 33058987 AATCATGCCTTGAAAGAGCT 58 33058533 33058927 TCTGTAGCAGTCCATTTAAGTG 58 NA Rattus norvegicus 81 AABR07007544.1 ENSRNOG00000048330 ENSRNOT00000073727 2 1 1 86 2 17939769 17939792 CCTTCAAGAATTACAGGAGAACAC 60 17939682 17939701 AATTCCTTTACTGGCATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 3 2 2 80 6 145776306 145776327 GACTCGGACAATGAAGATTTCG 60 145776366 145778975 CTCTGACTCTATGAGCTCTGG 59 NA Rattus norvegicus 81 Gnao1 ENSRNOG00000019482 ENSRNOT00000026373 3 1 1 80 19 11668758 11668779 CAAAGACGTGAAATTACTCCTG 58 11582678 11668522 TCATGGATGATCTTCATCTGC 58 NA Rattus norvegicus 81 Dtd2 ENSRNOG00000006727 ENSRNOT00000009020 1 1 1 89 6 72785239 72786707 AGATTCGGAGAGGATTGGTG 59 72781634 72785189 CGTTTAACAGCGTATTGACCA 59 NA Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000087792 1 1 2 80 1 166670094 166670580 TGGTTAATTCAGCAGGTGAC 58 166670033 166670054 CTCATACTGGTCATCAAATGCA 59 NA Rattus norvegicus 81 AABR07033162.1 ENSRNOG00000030674 ENSRNOT00000052022 2 1 1 79 11 8268906 8268924 AGTACCAGAAGAGGGTCAC 58 8268969 8268987 CTGTTCTTTCCTGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Prdx1 ENSRNOG00000017194 ENSRNOT00000023132 1 1 1 80 5 135543256 135543692 TCATCTGGCATGGATTAACAC 59 135543734 135543752 CGCTTGGGATCTGATACCA 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 2 1 1 80 13 68797916 68800484 GAGAGCAGATATCCAGTAAATTGG 59 68800523 68800541 GCATGTCAGTCCTTCTGGT 60 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133,ENSRNOT00000046370 1 2 2 82 11 4327027 4327046 AAGGACAGTACACCTGTTCC 59 4324426 4326982 CTTCTCTGGAACACCCAGG 60 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133,ENSRNOT00000046370 3 2 2 84 11 4286163 4300197 GGTGCTAGAAATACACTATACACC 59 4286102 4286122 AGTCAATGTTAAAGCCTGTCC 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000052029 1 1 3 80 1 66010534 66011113 CGGTTATCATTGCTTCTTCCA 59 66011153 66011173 GACAAAGACAGACACTACCTC 58 NA Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 3 2 2 80 10 56664540 56664563 GTGGGAAGAAAGATGAAGTTAGTC 60 56664599 56665025 TAGCAATCTAGAGTGGTCTTCC 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 1 2 3 80 20 5094134 5094152 CGAGTGATGACAGAGGAGG 59 5094193 5094290 ATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Rn60_1_1353.1 ENSRNOG00000051335 ENSRNOT00000076599 1 1 1 60 1 134195457 134195476 CACACTTCACATCCTCTTCC 58 134195497 134195517 TCATAACTTCTCTGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssr4 ENSRNOG00000053172 ENSRNOT00000083557 1 1 1 80 X 156997792 156997812 CAGATGCCGTCATTTCTACAG 59 156996750 156997750 GAGCCATATTCTGGACCCT 59 NA Rattus norvegicus 81 Rn60_1_1368.1 ENSRNOG00000051333 ENSRNOT00000076462 2 1 1 60 1 135713024 135713042 AACAACGGGTGATTCAGAG 58 135713065 135713084 TAGCAACCTGGACATTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363048 ENSRNOG00000032740 ENSRNOT00000050090 3 1 1 60 9 61552392 61552410 AGTAGGTATACCAGCCCAG 58 61552434 61552452 CCAGAAGTACCACAGTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alox12e ENSRNOG00000019074 ENSRNOT00000025910 2 1 1 80 10 56930000 56930021 CTCTTGGACGTGAAATCTTCTC 59 56929844 56929959 CATCCTTCCCACATACCGA 59 NA Rattus norvegicus 81 Gzmm ENSRNOG00000030530 ENSRNOT00000011086 2 1 1 82 7 12894512 12894531 CCTTCTACATCAAGCAAGCC 59 12894354 12894467 TCCATCCAGCTTAAGCAGG 60 NA Rattus norvegicus 81 Pdgfb ENSRNOG00000017197 ENSRNOT00000023196 1 1 1 80 7 121224339 121224357 ATGAAATGCTGAGTGACCA 57 121222206 121224295 CATCTTCGTCTACGGAGTC 57 NA Rattus norvegicus 81 Rhob ENSRNOG00000021403 ENSRNOT00000008008 2 1 1 60 6 33690933 33690951 TCGTGTTCAGTAAGGACGA 58 33690891 33690910 ACATAGTTCTCGAACACGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 1 2 2 80 X 156434860 156435189 CTTAGTTCAGATCCTAGCCCG 60 156435228 156435249 AGAAAGAGGACAGTATTCTGGG 59 NA Rattus norvegicus 81 Defb49 ENSRNOG00000039651 ENSRNOT00000060805 1 1 1 66 9 24451381 24451399 CTCGACCTGTTGAAGACAG 58 24446416 24446434 TGCCTTTCTTGAGAAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 3 1 1 84 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432447 121432466 AAGTGCAGGAAGGAGATGAG 60 NA InUTR Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695 2 1 2 111 9 100833054 100833072 CGTATATCGGAATGTGGCC 58 100833147 100838970 CCATGTGATACCTGCTGAG 58 NA Rattus norvegicus 81 LOC102550396 ENSRNOG00000030870 ENSRNOT00000043229 1 1 1 80 4 155729806 155729826 GCATTCGCCTATGTATTTGCT 60 155728051 155729764 TTGAGACAGAGTCGACAGG 59 NA Rattus norvegicus 81 Anks6 ENSRNOG00000023309 ENSRNOT00000060005 1 1 1 80 5 62671161 62671180 GGGCTGATGTTACTCTTCGA 60 62668392 62671121 GTTCAGTGTCAGGATCATTCAG 59 NA Rattus norvegicus 81 AABR07036374.1 ENSRNOG00000001347 ENSRNOT00000001818 3 1 1 133 12 40535054 40535072 AGGATGTCCTCCTGTTTGC 60 40535167 40535221 ACTGGTCTTACTGATCGTCTC 59 NA Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000055290 1 1 2 186 7 144778334 144778485 TCCATACCAGGTCACAACG 59 144778166 144778184 TGTAGATGACACCCACAGG 59 NA InUTR Rattus norvegicus 81 Miox ENSRNOG00000008694 ENSRNOT00000011941 2 1 1 80 7 130310445 130310464 CAGAACTTGGCATGTACCAG 59 130310503 130310621 TCTGGTATAGGTACTCATCATGG 59 NA Rattus norvegicus 81 Mcm8 ENSRNOG00000021272 ENSRNOT00000028898 2 1 1 80 3 125477848 125479191 CAACAAAGTGTCCTGTGCC 60 125479235 125479253 AGTCCATTGTGACGGTGAG 60 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 3 1 1 80 10 89095465 89095483 AGAGTTTCGGAAGCTTGGT 59 89095525 89095804 CACATATTAGGGCTGCATCTG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905,ENSRNOT00000081945,ENSRNOT00000040566,ENSRNOT00000045020 2 5 5 80 2 258825659 258828093 GCTTACCTTAAGGCCATTGTG 60 258825599 258825619 GGAATTCATGTGTTTCCAGCA 60 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 3 1 1 80 1 126586945 126586964 GCTGGCTCAGTCAATAAAGG 59 126587006 126588225 GAGAACAGCTGATTCTCTGC 59 NA Rattus norvegicus 81 Gfer ENSRNOG00000013370 ENSRNOT00000017917 2 1 1 86 10 14060047 14060827 TAAGGAAGAGGATAGACAGGAG 58 14059982 14060000 TCACTTCATTGTGAAGGCG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 2 2 6 93 12 41264266 41264284 CTCTGAGCTTCAAGCTGAG 58 41262300 41264209 GGGATACAAACATGACCCA 57 NA Rattus norvegicus 81 Cd38 ENSRNOG00000003069 ENSRNOT00000004121 2 1 1 80 14 71722570 71724556 CAGTACTTCCGATATGAACTATGAC 59 71722514 71722532 TTCCAGAACACAGCAACAG 58 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000078718,ENSRNOT00000012354 2 2 2 80 3 21635413 21637307 CCACAAACAGGATACTACCCA 60 21635353 21635371 ATTGGACCTCACAAAGCGA 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 1 2 7 80 19 15108361 15110227 CTCTGTTCTTGTGTTGTCCC 59 15110270 15110288 TCAGTAATGAGGACCACCC 58 NA Rattus norvegicus 81 RGD1304622 ENSRNOG00000000040 ENSRNOT00000004704 3 1 1 80 13 72871412 72872752 AATGGAGATGGAACGCTCC 60 72871350 72871368 GAGGGAGAGGGTGATAGCT 60 NA Rattus norvegicus 81 Cxcl14 ENSRNOG00000011984 ENSRNOT00000016009 1 1 1 80 17 9113805 9113825 ATCCTAAGCTGCAAAGTACCA 60 9113866 9116639 CCTACTCTTCGTAGACCCTG 59 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 1 1 1 80 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328450 36328470 TCTGGTGTTTCAAGACTTCCT 59 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 3 1 1 81 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328449 36328469 CTCTGGTGTTTCAAGACTTCC 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 2 2 2 80 11 27026480 27026501 ATGGTTTCAACTATTCCCTTCC 59 27024746 27026440 ACCATTTGTACAAGCAAGCT 58 NA Rattus norvegicus 81 AABR07065778.2 ENSRNOG00000047308 ENSRNOT00000074472 3 1 1 60 6 141008238 141008256 ACAAACTATGCACCATCCA 57 141008196 141008215 TGTTCTTGGCATTGTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 2 2 2 80 5 64294800 64294819 AGCTCTACTTCCTTCAGAGC 59 64294861 64303956 AAACAGCAAAGGACTCTTGG 59 NA Rattus norvegicus 81 Cct8 ENSRNOG00000001592 ENSRNOT00000002169 2 1 1 80 11 27139613 27139633 AAATGGTGATTAATCGCCTGG 59 27137802 27139571 GATGCTGCACTTCTAGCTC 58 NA Rattus norvegicus 81 Hao1 ENSRNOG00000004601 ENSRNOT00000006330 2 1 1 80 3 127453249 127453268 TTAAACATGGTGTGGATGGG 58 127448723 127453206 GGGCATCAATAGTAGCTGG 58 NA Rattus norvegicus 81 Ahnak2 ENSRNOG00000028545 ENSRNOT00000039631 3 1 1 60 6 137338956 137338974 TTCCCAAATTCCACAAGCC 59 137338914 137338933 GGACATTCAGACTCAGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559629 ENSRNOG00000031317 ENSRNOT00000049500 3 1 1 60 6 69950763 69950784 CTTGATTATTGGCTATGCCAGG 60 69950805 69950823 AATGGGATAGGAGGAGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637,ENSRNOT00000036148 2 2 2 80 5 149930755 149930774 GTCGTGGACATTTACAACTG 57 149930281 149930714 GAAGATGTATTGTTCCTCGGT 58 NA Rattus norvegicus 81 Mroh9 ENSRNOG00000003698 ENSRNOT00000004931 3 1 1 80 13 80944569 80944588 TGGACAAGGTGATCTACTCC 59 80939306 80944527 TGCCACCATTAACATGATCC 58 NA Rattus norvegicus 81 Gfpt2 ENSRNOG00000002810 ENSRNOT00000003770 3 1 1 80 10 35296226 35296895 AGGAAATTTCTGGAAAGCAAGG 60 35296933 35296954 TACGTATTTAATCAGCTTGGCG 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 2 2 2 80 14 66742820 66744688 ACTAAAGAGGAAATGCTGGAC 58 66744730 66744748 ATCTTCCTTGAGGACAGGG 58 NA Rattus norvegicus 81 RGD1559921 ENSRNOG00000006599 ENSRNOT00000008621 3 1 1 60 6 103616318 103616337 CATGTTCATCAGGAACACCA 58 103616277 103616297 CTCAGAGTGAAACTCCTCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 1 1 1 80 16 17702554 17702572 TACAGCTTTCTGGGAGTGG 59 17702614 17708309 GGTGATGATTTCCTCCTTGTG 59 NA Rattus norvegicus 81 Testin ENSRNOG00000018028 ENSRNOT00000024467 3 1 1 85 17 4217544 4217567 GGATCATCAGTTTCTTTATGTCCC 60 4217608 4217817 CACAATGACCCTGATTCTTCAC 60 NA Rattus norvegicus 81 Cpeb3 ENSRNOG00000020689 ENSRNOT00000047387 2 1 1 80 1 255727190 255728356 ATCGATGAAGATGAGATCACTG 58 255727131 255727150 CTTGCTCTCCGCTTTATGAG 59 NA Rattus norvegicus 81 AABR07064667.1 ENSRNOG00000004163 ENSRNOT00000005511 1 1 1 60 6 89932799 89932819 ATGGTCTGGAATTCTATGTGG 58 89932759 89932778 CATTTCTTGTCTGCAATGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpa1 ENSRNOG00000007354 ENSRNOT00000009874 3 1 1 80 5 3823982 3824375 TGAATTTCCAAGATGCCTTCAG 59 3824415 3824434 GGTAATTGATGTCTCCCAGC 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 2 1 1 60 8 109456212 109456230 GCTCTTGCCTTACTTCCGA 60 109456254 109476812 ATCTTGAAGCAAATGCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 3 1 1 62 8 109456210 109456228 AGGCTCTTGCCTTACTTCC 59 109456254 109476812 ATCTTGAAGCAAATGCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Pigg ENSRNOG00000049895 ENSRNOT00000072386 3 1 1 80 14 2432101 2432985 CACTGTTGTCAAAGGACAGAG 59 2432041 2432060 TCCCTGTTTCAGACATTCCA 59 NA Rattus norvegicus 81 Acbd4 ENSRNOG00000003108 ENSRNOT00000004163 3 1 1 86 10 91189375 91189731 CACCTCCAAGTCCAGAGTC 59 91189781 91189799 CCAACTCTGGCTCTAGCTG 60 NA Rattus norvegicus 81 Alg10 ENSRNOG00000014511 ENSRNOT00000019672 1 1 1 80 7 131331118 131331136 ATGGACGAGATCTTCCACC 59 131331177 131332564 AATCATAGGATCCCACTGTGAC 60 NA Rattus norvegicus 81 Ptchd4 ENSRNOG00000012708 ENSRNOT00000016940 3 1 1 80 9 21275943 21275963 ATCTTCTTCATCACTGATGGG 58 21142694 21275902 TCCTTTAGTTCCATGACCCA 58 NA Rattus norvegicus 81 Fmc1 ENSRNOG00000005618 ENSRNOT00000007544 3 1 1 61 4 66276985 66277004 CTACCGGTACCTGGTTAAGG 59 66283725 66283744 CTCTGCACAACTTCTCACTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 2 1 1 81 1 100205108 100205126 CATGTTCCTCTCCTTCCGA 59 100204591 100205063 CACAATGCCAATGCTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Inhbc ENSRNOG00000007700 ENSRNOT00000010240 1 1 1 183 7 70661219 70661237 AAAGCATCCTGGACAAGCT 60 70649565 70661072 TTGATGTTGGAGAGGCCTG 60 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 2 1 1 81 5 153777797 153781866 GTCCAAGAGCAGAAGGAGAG 60 153777735 153777754 GAAAGCTCTTGAACAGCTGG 60 NA Rattus norvegicus 81 Slc29a1 ENSRNOG00000019752 ENSRNOT00000026831 2 1 1 80 9 17793348 17793367 CTGGCTCATCTTCTTTGTCC 59 17793408 17793540 CTTGTGAAATACTGGGTTGCT 59 NA Rattus norvegicus 81 Ptprk ENSRNOG00000047605 ENSRNOT00000020988 3 1 1 80 1 17787825 17789720 AGTTATCCTTGCGATAAGTCTC 58 17787766 17787785 CTGAAATGTAGCATTCTGCC 57 NA Rattus norvegicus 81 LOC501180 ENSRNOG00000018559 ENSRNOT00000025029 3 1 1 60 9 93445365 93445387 CTCCATGACTACATCAACATCTG 59 93445406 93445425 GCTAGGATTTGGAGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stac ENSRNOG00000008865 ENSRNOT00000011780 1 1 1 80 8 119829437 119829558 CTGGTGGAAAGGAAAGATTCAG 59 119829378 119829401 ATCTTCTCATGCTCTTCTACTCTC 60 NA Rattus norvegicus 81 Jph1 ENSRNOG00000006110 ENSRNOT00000008153,ENSRNOT00000085564 2 2 2 87 5 1500128 1500149 AGAAGTCTGAACTTGCTATACC 58 1500197 1506534 GAATTAGGGCCGGAATTGG 59 NA Rattus norvegicus 81 Trpm7 ENSRNOG00000057806 ENSRNOT00000077398 2 1 1 80 3 119330272 119330292 TATACCAAGCTCCAAAGACCC 60 119323221 119326273 CGACCACAGAAACATCTGAC 59 NA Rattus norvegicus 81 Med11 ENSRNOG00000019384 ENSRNOT00000085810,ENSRNOT00000026335 2 2 2 173 10 57057749 57057913 CAGGAACAGCAATCCTGGA 60 57058794 57058812 AAGAATAGCTGGAGCCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Slc16a1 ENSRNOG00000019996 ENSRNOT00000027234 1 1 1 83 2 207119543 207119561 TATTCAGTGCAACGACCAG 58 207119608 207122617 TACTGCTGATAGGACCTCC 58 NA Rattus norvegicus 81 Camlg ENSRNOG00000021911 ENSRNOT00000037088 3 1 1 86 17 9524390 9529190 TTCCTAAGGGTGAGAAGAAGG 59 9524324 9524342 ACCGGTTTATCACCTCAGC 60 NA Rattus norvegicus 81 Spata31d1d ENSRNOG00000027014 ENSRNOT00000039803 1 1 1 81 17 5321194 5321964 AAGGAATCAGAAAGCAACAGG 59 5322566 5322586 GCTTCTCCGTGTAAGTTTCTG 59 NA Rattus norvegicus 81 Anapc7 ENSRNOG00000001283 ENSRNOT00000001729 1 1 1 80 12 39627067 39627085 TGTCCGTGTGGATTAAAGC 58 39625009 39627023 TCTCTAGCGAACAGATGGT 58 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578,ENSRNOT00000026466 1 2 2 80 1 199353298 199353392 GACTTCCCTCCGATCAAGG 60 199353434 199353454 ATCCTTGTGGTCATCTAGCAG 60 NA Rattus norvegicus 81 Rbm25 ENSRNOG00000002874 ENSRNOT00000003834 2 1 1 80 6 107156305 107156324 CTTGAGGAAATCAGGCAACG 60 107156367 107157796 AGCCTCTTGTTCCATCCTC 59 NA Rattus norvegicus 81 LOC100362054 ENSRNOG00000031178 ENSRNOT00000045266 2 1 1 87 1 67341084 67341102 GAAGTGGAAATCCTGTGGC 59 67341153 67350520 AACATGGACCATAGCAGGA 58 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227,ENSRNOT00000066222 3 2 2 80 8 58386691 58390041 CCTATTCGAGTATAAGTTCTCAGGA 60 58390076 58390097 GTGGAACAGTACAAGATGAAGC 60 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685,ENSRNOT00000078530,ENSRNOT00000088002 3 3 4 80 12 38395616 38399705 GTTAGAAGACACTAGGGTGG 57 38399748 38399766 TGTACTCTCAACGCTAGGT 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000083261 1 1 4 172 12 38385159 38385177 TTGGCTTCCCTTCTACCAC 59 38385312 38386227 GGATGCAAATAGTCCTGTCC 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000083261 3 1 4 174 12 38385157 38385175 GATTGGCTTCCCTTCTACC 58 38385312 38386227 GGATGCAAATAGTCCTGTCC 59 NA Rattus norvegicus 81 Gprc5a ENSRNOG00000008412 ENSRNOT00000011134 2 1 1 80 4 168846205 168846224 CTCAACTCATGAAGCAGAGC 59 168846266 168850443 CCATCTCCTCAAGACCTTGG 60 NA Rattus norvegicus 81 Olr982 ENSRNOG00000002333 ENSRNOT00000003174 1 1 1 60 7 4216314 4216334 GTGACTCCAACATCATTGACC 59 4216274 4216292 CAAGAGATGAGCAGCAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1739.1 ENSRNOG00000051318 ENSRNOT00000076911 3 1 1 60 1 167654481 167654501 ACAGTCAAGTCTGAGAATGGG 60 167654523 167654541 CCTGGAAGATGGTGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtmr4 ENSRNOG00000007496 ENSRNOT00000009943 2 1 1 80 10 74891184 74891532 AAATCTTCAGGTACCCTTCAC 58 74891574 74891592 ATTGCAATGAGGGCATCAG 59 NA Rattus norvegicus 81 Col7a1 ENSRNOG00000020579 ENSRNOT00000027994 3 1 1 80 8 117704010 117704031 ACTGTTAGTGGATGAACCTCTG 60 117704072 117704177 ATCATCACCTTGAGCCCAG 60 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157,ENSRNOT00000066711 2 2 2 80 1 204267470 204271694 ATGAATAGGATCATTATCGGAGAGG 60 204267414 204267435 GCTGTTGTCATAGAAGAAGGTC 59 NA Rattus norvegicus 81 Defb18 ENSRNOG00000039650 ENSRNOT00000060803 1 1 1 81 9 24467828 24467846 TTTCTGTGTCCTGTGGTCC 60 24467111 24467130 CCAACCAGGAAACATTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 3 2 2 80 7 58340392 58342734 GCACCTATTATGGTAGCTTGC 59 58340332 58340353 TACAGGAGATCACAACAGAGAC 59 NA Rattus norvegicus 81 Hectd3 ENSRNOG00000018363 ENSRNOT00000024737 3 1 1 80 5 135862678 135862700 GTCTGTGTATTAGAGGACATGAC 59 135862737 135863162 ATCTATCCCATCATCTCGACAC 59 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090,ENSRNOT00000058689 3 2 2 80 13 84591534 84591553 GGTTCAAGCAGAAGATCAGC 59 84591594 84591790 TGTGAGAATGGACATTGTCCT 60 NA Rattus norvegicus 81 Tcf21 ENSRNOG00000016700 ENSRNOT00000022798 2 1 1 159 1 23907246 23907264 TCAAGACTACCCTTCCCTG 58 23907387 23909033 ATAAAGGGCCAAGTCAGGT 59 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 2 2 2 82 9 19126819 19134319 TGTGGTCAAGATTGTGGCT 60 19126755 19126773 CATTCTTGAGGTACCGCCA 60 NA Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000041550 1 1 2 81 9 91668213 91674222 TTGAGATGGTCACGTATCTGG 60 91668152 91668170 TCAATGACTGGCTTCTCGG 60 NA Rattus norvegicus 81 Rnf121 ENSRNOG00000020175 ENSRNOT00000027321 3 1 1 80 1 167134142 167134161 TTATTGCTACCTTGGTGGTG 58 167119066 167134103 GGGTCACCATATTATAAGAACGG 59 NA Rattus norvegicus 81 Tmem107 ENSRNOG00000006519 ENSRNOT00000008787 3 1 1 83 10 55654401 55654501 GACAACCAACTGGTAGCAG 59 55654548 55654566 CATGGAGACTCCTGAGAGG 59 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 2 2 2 80 9 94230655 94230796 GACGTATCTCATGGGCCTC 60 94230839 94230858 TTCAGAGATGGGTCCATCAG 59 NA Rattus norvegicus 81 Fam46a ENSRNOG00000010240 ENSRNOT00000056937 1 1 1 80 8 92940149 92941195 CTCTCAAGGAAGCGTATGTG 59 92940088 92940108 TGTTTGACAGGGATATAAGGC 58 NA Rattus norvegicus 81 Atr ENSRNOG00000010027 ENSRNOT00000049967 1 1 1 80 8 103753243 103753262 TGAATGGGTGAACAACACTG 59 103753302 103757299 TTTCCTGTCATATACACTCCCT 59 NA Rattus norvegicus 81 Atr ENSRNOG00000010027 ENSRNOT00000049967 3 1 1 80 8 103727993 103728013 CATGAAAGTATTGGCTTGCTG 58 103728055 103729383 ATGAATGATCTGGTCCGGT 59 NA Rattus norvegicus 81 AABR07065656.2 ENSRNOG00000047577 ENSRNOT00000072566 1 1 1 116 6 138948234 138948252 AATCCCGACTGAGCATCAG 60 138948042 138948156 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508,ENSRNOT00000035009 1 2 2 80 16 7399575 7399881 GAGATTGAGAGGAGGAAACAG 58 7399515 7399534 CTTGTTAGAGTCAATGCCCT 58 NA Rattus norvegicus 81 Myl2 ENSRNOG00000030848 ENSRNOT00000050368 3 1 1 84 12 39957151 39957171 AAGAATGACCTAAGGGACACG 60 39954982 39955004 CTGGAGCCTCGATCATCTC 60 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 2 2 2 80 9 76766287 76767143 ATGGCTACATAACGTGTGAC 58 76766226 76766244 GTGTGCTTGAAGTGAGGTC 59 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 1 2 2 80 8 76407609 76407627 TGAAGGTGGAGAAGTTGAC 57 76407670 76409499 GGAAGATCATCTTCCCACTC 58 NA Rattus norvegicus 81 LOC297568 ENSRNOG00000042228 ENSRNOT00000041957 3 1 1 80 4 154810949 154811067 GGGAAACACTTAGTCCAAACC 59 154810296 154810319 CTTTAGGTGGTGGATCTTTATGTG 60 NA Rattus norvegicus 81 Krt28 ENSRNOG00000011846 ENSRNOT00000044206 3 1 1 86 10 87282587 87282685 TGGTTCCAAGAGAAGAGCG 60 87282519 87282537 CTCTGTCAGCTCAGTCCTG 60 NA Rattus norvegicus 81 C1qtnf6 ENSRNOG00000007300 ENSRNOT00000009551 3 1 1 97 7 119748143 119749936 CCTGAAAGGTGACAAAGGG 58 119748064 119748083 CTTTGATACCCTGAGAGCCA 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756,ENSRNOT00000082008 3 3 3 87 3 14621469 14637126 GTTCAATCCAAAGAACCGC 58 14621400 14621418 CAGAGCTGTGTCGTAAGTG 58 NA Rattus norvegicus 81 Pkdrej ENSRNOG00000029591 ENSRNOT00000041057 2 1 1 60 7 126696654 126696674 GGTGTATTATTCCTATGGCGT 58 126696614 126696635 GAAATAGAACTCATACCCTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0862.1 ENSRNOG00000057028 ENSRNOT00000078328 2 1 1 60 10 86337206 86337224 GCTTTCTGTACAGACTCGG 58 86337246 86337266 CACATACCATAGTGAGGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r67 ENSRNOG00000031928 ENSRNOT00000061889 2 1 1 80 14 1321540 1321559 AGAAAGAAACAGCAGACTGC 59 1321597 1322769 GTTCCATATCTGCTGTATCATTGG 60 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 1 2 2 80 3 72021997 72022017 TGTCTGATTATGGTACTGCCC 60 72018387 72021959 CAATCATGTCTTCATAGCTCCTG 59 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 3 2 2 80 3 72016570 72016591 ACCTAATGAAGACTGTAAGCCA 59 72015402 72016532 CTTACATTTCTAAGGCAGCCAG 60 NA Rattus norvegicus 81 Paxbp1 ENSRNOG00000002036 ENSRNOT00000002800 3 1 1 80 11 31205409 31205427 TGGAGAGCAAGACGAAGAG 59 31204495 31205365 CTTGCTTGAACCTGAGGGA 60 NA Rattus norvegicus 81 B3gnt7 ENSRNOG00000018267 ENSRNOT00000024578 1 1 1 202 9 93326405 93326423 AAGGGTTAACCTACCTGGG 58 93328009 93328028 GCATACACTCTTGTAGAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir7b ENSRNOG00000049078 ENSRNOT00000071390 2 1 1 62 9 10812501 10812521 ATGCTATGTGGAAGACTTGTG 58 10812459 10812477 CTGGCTGTGACTTGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc7b ENSRNOG00000032419 ENSRNOT00000040769 1 1 1 60 7 130358103 130358121 AAGAAATAACCCAGCAGCC 58 130358145 130358163 CTGTCTGTAGGTCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aktip ENSRNOG00000011956 ENSRNOT00000060865 1 1 1 80 19 17297720 17297738 TTCACCCGCTAGTTGATCC 60 17297781 17297880 TATGGTTATGGTTCCGCCTC 60 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 2 1 1 89 11 28973569 28973588 CTACTATGGCTGTGGCTACC 60 28973475 28973518 CCATAACCACAGCCATAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707,ENSRNOT00000073355 2 2 2 80 1 128686482 128686503 GACGTTCTTGTATGGATCACAG 59 128686543 128687353 GTCTCGGAGATCTTGGACAG 60 NA Rattus norvegicus 81 Exosc6 ENSRNOG00000018582 ENSRNOT00000025179 2 1 1 121 19 43191777 43191795 CTACCCTCGTGCTCAACTC 60 43191674 43191693 GATCGTACATCTCCACTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 1 2 2 80 7 18416360 18416379 ACGTAGTATACAAGCGTTCC 58 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682,ENSRNOT00000087439 1 2 2 80 3 46832009 46842343 CTCAGATGGCAAAGCAACAG 60 46831948 46831969 GTTCTTGTTCATCCATGGACAG 60 NA Rattus norvegicus 81 Ms4a18 ENSRNOG00000042330 ENSRNOT00000067235 2 1 1 85 1 227055787 227055805 CCTTGACTGGAATCCTCGT 59 227054399 227055743 GGTTACCTTCATAGAACACATCAG 59 NA Rattus norvegicus 81 Ms4a18 ENSRNOG00000042330 ENSRNOT00000067235 3 1 1 85 1 227054352 227054371 CTGGAATTCATCCTCACCTG 58 227051428 227054305 GGGAACACTGTCATGTTCTC 59 NA Rattus norvegicus 81 AABR07065705.3 ENSRNOG00000059199 ENSRNOT00000075502 2 1 1 134 6 139747393 139747411 CTCAAATCCCGACTGAGCA 60 139746906 139747295 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 1 5 5 80 4 176266360 176266383 CTATCAGGATTTCTCAGTATCCTC 58 176262970 176266323 TTCAGACTTGATACACCTCAG 57 NA Rattus norvegicus 81 Zc3h8 ENSRNOG00000017647 ENSRNOT00000023845 1 1 1 80 3 121485528 121485546 GTTGAAGAGGCACAGACAG 59 121480330 121485486 AAGGTGCTTAAACTTCTTGGG 59 NA Rattus norvegicus 81 Sin3b ENSRNOG00000048622 ENSRNOT00000074814 1 1 1 80 16 18849953 18852170 CACACCTACCAGAAGGAGC 60 18849891 18849910 CACCTCTGTGAAGACTTCCT 59 NA Rattus norvegicus 81 Otp ENSRNOG00000010560 ENSRNOT00000014036 2 1 1 111 2 24548141 24548159 GAATTGGAGAGGAGCTTCG 58 24548234 24554168 GATTCTGGAACCAGACCTG 58 NA Rattus norvegicus 81 Pus7l ENSRNOG00000022570 ENSRNOT00000029097 3 1 1 83 7 135795543 135799545 AGTGTATACAGCTTTCACCCT 59 135795480 135795498 ATAACGCCAAGTTGGATGG 58 NA Rattus norvegicus 81 Ppap2b ENSRNOG00000008116 ENSRNOT00000011237 1 1 1 80 5 124751512 124751531 CTACAAACACCATCCTAGCG 59 124751572 124763663 GACACGAAGAACACTATGCAG 59 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000017096,ENSRNOT00000016801 3 2 2 80 7 143845724 143846357 TCCAAGGAAGCTGTAAGGA 58 143845662 143845681 CAGTTCGTAGTTGTCTGGTG 59 NA Rattus norvegicus 81 Otud5 ENSRNOG00000008764 ENSRNOT00000006233 3 1 1 80 X 15472594 15472612 CCTCTTGTGTCCCTCTACC 59 15472253 15472551 ATCATTCAGACCAAAGGCAG 58 NA Rattus norvegicus 81 Zfp870 ENSRNOG00000030416 ENSRNOT00000042638 3 1 1 92 7 15163537 15163748 CCTCTATAGGAAACAAGTTGAGC 59 15160879 15160898 AGAACTTCTCCACCAGTTGG 60 NA Rattus norvegicus 81 Plcd1 ENSRNOG00000032238 ENSRNOT00000045493 1 1 1 80 8 127758132 127758241 AAGATCTTCAGGGAATGTGAC 58 127758072 127758091 GGTCAGCATCTTGTAGAAGG 58 NA Rattus norvegicus 81 Plac8 ENSRNOG00000002217 ENSRNOT00000003012 1 1 1 103 14 10706420 10709847 GCATTCCTGGGTCTATTTGTG 59 10709912 10709930 GTTCATGGCTCTCCTCCTG 60 NA Rattus norvegicus 81 Cic ENSRNOG00000056118 ENSRNOT00000091357 3 1 1 81 1 82161164 82161280 TGACTCTGTGGACAACAGG 59 82161324 82161343 CTCCTCTGGTCTAAACTCGG 59 NA Rattus norvegicus 81 Hs6st1 ENSRNOG00000014516 ENSRNOT00000019966 2 1 1 80 9 42620284 42620303 GAACTCACCAACTGTGTTCC 59 42620343 42656274 GATGTAGTAGAACTTTCTGGGC 59 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 2 1 1 163 9 117044772 117044790 GGTTCTTTGTGTCTCCCGA 60 117047692 117047710 TATCCTCAGTAGGCCACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 3 2 2 80 12 45046755 45048341 ACTTAAAGGCCATGGAAATGC 60 45046695 45046715 TGAGTGCTTTGTACTGTTTGG 59 NA Rattus norvegicus 81 AABR07042903.1 ENSRNOG00000030174 ENSRNOT00000043480 3 1 1 89 19 14346724 14346743 CCAAGACCTACAGCTACCTG 60 14346799 14346832 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 1 1 1 80 9 119377738 119377756 AATGTCCATGCAAACCCAG 59 119377798 119380049 GAAGTCACACTTGCTGATCTC 59 NA Rattus norvegicus 81 Sox15 ENSRNOG00000012155 ENSRNOT00000016177 1 1 1 80 10 56260799 56261389 TGGCAGTTACACCTCTTCC 59 56261433 56261451 CCTTGGAGCCTAGGATCAC 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 1 2 2 80 3 9865831 9868323 CTCTACACCTTTGAAGGTCAG 58 9865771 9865789 TTTGTCCTCCTCAATCACG 58 NA Rattus norvegicus 81 Dlec1 ENSRNOG00000032085 ENSRNOT00000052275 1 1 1 80 8 127807265 127807283 AGAACACCACTTCCACCAG 60 127807325 127808426 GGAACATCCCAAGTCCTAGAG 60 NA Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 2 1 1 110 2 28054718 28054736 TAACCACGGTTCCCTACTC 58 28054810 28058631 TGTCAGAGTGAGCTCACTC 59 NA InUTR Rattus norvegicus 81 Trpm8 ENSRNOG00000019035 ENSRNOT00000025879 1 1 1 80 9 95448771 95448794 GAAGAACTGGAAGATTATCCTGTG 59 95448832 95449465 ATGGGCTTCTTCCTAAACGA 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217,ENSRNOT00000086660,ENSRNOT00000014207 3 3 3 80 4 147705739 147705757 ATCACTGCAGTCAAGTTCC 58 147705800 147708191 CATGAACTCTGCAATGAAGC 58 NA Rattus norvegicus 81 Mia ENSRNOG00000001499 ENSRNOT00000002050 2 1 1 97 1 83993039 83993143 AGTGTAGCCATCCTATCTCC 58 83992961 83992979 GACATATACCACTTGGCCC 58 NA Rattus norvegicus 81 Timd4 ENSRNOG00000038894 ENSRNOT00000059448 2 1 1 80 10 31890027 31911274 CGTCTTTCCGTTACCTTTCAG 59 31911316 31911334 CCTCAATCTGCCAAGACAC 59 NA Rattus norvegicus 81 Plbd1 ENSRNOG00000008933 ENSRNOT00000011930 3 1 1 80 4 170599430 170609891 CACAGCTCTACACATGTATGAC 59 170599371 170599389 TGCACTTTCTTCACGATGG 59 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482,ENSRNOT00000024445 2 2 2 80 9 94897131 94897153 AGTCATTGTAGATGAGACCTCAG 60 94897193 94897798 AGTCGCTTAGTAGCTGCTC 59 NA Rattus norvegicus 81 Tmem5 ENSRNOG00000004421 ENSRNOT00000006051 3 1 1 80 7 64329774 64330614 TTCTGCAAGAGAACAGTGG 58 64329712 64329731 AGGTCACTATGAAGCAAAGC 58 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 2 3 3 89 12 37880288 37881532 GCTGATAACAGACATCATCGAC 59 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 1 3 3 80 19 21466181 21466200 TTTGGATGAGGTTGACAAGC 59 21457745 21466139 TGTTCAGGATCCAACACCTC 60 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000068195 2 1 2 88 7 117953564 117954779 GATTTGCCAGACAGACTCC 58 117954831 117954849 CAAAGTCAGGAATCTGCCT 57 NA Rattus norvegicus 81 Ifngr2 ENSRNOG00000002032 ENSRNOT00000002779 2 1 1 80 11 31709512 31709531 CAAAGCCGGGTGAAATACTG 60 31709569 31710991 CTGATCTGGGTCCTTTAAATACTC 59 NA Rattus norvegicus 81 Ptges3 ENSRNOG00000002642 ENSRNOT00000003787 3 1 1 98 7 2492580 2492600 CTTAATTGGCTTAGTGTGGAC 57 2492658 2494725 ATCCATCATCTCAGAGAAACG 58 NA Rattus norvegicus 81 AABR07051535.1 ENSRNOG00000049499 ENSRNOT00000073229 2 1 1 91 3 16590281 16590505 TATGGGTCTCTGGTACATTTGG 60 16590555 16590575 GCAGCTCATAGTCACTTTCTC 59 NA Rattus norvegicus 81 Ngp ENSRNOG00000024330 ENSRNOT00000029755 2 1 1 63 8 118662498 118662516 CTAAGTGCCACTCCACCTC 60 118663255 118663274 TAATCCTGAACTCGAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Ngp ENSRNOG00000024330 ENSRNOT00000029755 3 1 1 64 8 118662498 118662516 CTAAGTGCCACTCCACCTC 60 118663255 118663275 TTAATCCTGAACTCGAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Baz2a ENSRNOG00000053881 ENSRNOT00000079383 1 1 1 80 7 2546721 2546739 GAGGTGGTAGTGGAGAAGG 59 2546778 2546891 GATCTCATAGGATATCTCAGTCGT 59 NA Rattus norvegicus 81 Hspa12a ENSRNOG00000018019 ENSRNOT00000024548 1 1 1 80 1 279956649 279956667 GCCCTTCTCCTTCATTGAC 58 279952070 279956605 AAGTCCACATTGCTCTTCC 58 NA Rattus norvegicus 81 Irx3 ENSRNOG00000011533 ENSRNOT00000015583 2 1 1 109 19 15839664 15839872 TGGAACAGATCGCTGTAGTG 60 15839104 15839123 ATAAGACCAGAGCAGCATCC 60 NA Rattus norvegicus 81 Irx3 ENSRNOG00000011533 ENSRNOT00000015583 3 1 1 112 19 15839664 15839872 TGGAACAGATCGCTGTAGTG 60 15839101 15839120 CTGATAAGACCAGAGCAGCA 60 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 3 2 3 97 2 210547142 210550355 CTTCTTCGACATGGATGGG 58 210547063 210547081 CCCAATCATGTGGCTACAG 58 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 2 2 2 80 5 135445040 135445059 TACAGATGCCCAGACATTGG 60 135445099 135445456 GATGAACTGGACATCATTGGTG 60 NA Rattus norvegicus 81 Fcrlb ENSRNOG00000003135 ENSRNOT00000004181 2 1 1 85 13 89290697 89291059 GAAAGCTGCTACTCTGGAG 58 89290630 89290648 ATCTCAGGGTTACTCGCTC 59 NA Rattus norvegicus 81 Tomm40l ENSRNOG00000003398 ENSRNOT00000004641 3 1 1 80 13 89593161 89593184 AATATCGAGGAGATGACTACACAG 60 89592809 89593126 GAGCAACCATAATCACTGATTCC 60 NA Rattus norvegicus 81 Gca ENSRNOG00000007359 ENSRNOT00000009697 2 1 1 80 3 48655097 48655117 CATTGACCAGGATCAAAGTGG 59 48655159 48658555 GGACTCAACCTGTAACCCA 59 NA Rattus norvegicus 81 Dscr3 ENSRNOG00000001681 ENSRNOT00000002284 2 1 1 80 11 34771466 34776026 GTCAACATTCAGTATACTCTGCG 60 34771408 34771429 GATGAATTCACAGGTCTTGGTC 59 NA Rattus norvegicus 81 Zap70 ENSRNOG00000016995 ENSRNOT00000023036 1 1 1 80 9 43351696 43352722 CTGCTGGATATACAAGTGGG 58 43352764 43352783 GCCATGCTGTAGTAATAGGT 57 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 1 1 1 81 10 17415168 17415186 GTTGAGAAACGTGAAGGCT 58 17409688 17415126 GAACAACACATCATTCAAGGTG 59 NA Rattus norvegicus 81 Slc35g3 ENSRNOG00000014519 ENSRNOT00000019674 1 1 1 87 10 56367857 56368323 AAGAAGAGATGGCTGCCAG 60 56367788 56367806 GAAGTGAGGCTGGATGGAG 60 NA InUTR Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000041571,ENSRNOT00000052017 2 3 3 80 4 150647273 150649531 CCTGCTCTCCACAGATATACTC 60 150647214 150647232 ATCTCCCTCTTGTCCTCCT 59 NA Rattus norvegicus 81 Spryd4 ENSRNOG00000003127 ENSRNOT00000004173 1 1 1 80 7 2623737 2623755 TTGTTGGAACTTGTACCGC 59 2623332 2623695 AGTTTGAAACTGATGCCTCTC 59 NA Rattus norvegicus 81 S100z ENSRNOG00000017998 ENSRNOT00000024202 2 1 1 81 2 25188937 25190372 CTCACAGAATTCCTCACATGTC 59 25188877 25188895 CGTTGTCCTTGTTAGCGTC 59 NA Rattus norvegicus 81 Sdcbp2 ENSRNOG00000009528 ENSRNOT00000012690 2 1 1 80 3 147091623 147092411 ACTCTCAGAGCTGTATCCA 57 147092454 147092473 TTCTTCTGAACTTCTTGGCT 57 NA Rattus norvegicus 81 Hsd3b7 ENSRNOG00000019080 ENSRNOT00000025933 3 1 1 91 1 199250222 199250662 GTCTACGTTGGCAATGTGG 59 199250717 199250735 CAGAAATACACCTGGCCAC 59 NA Rattus norvegicus 81 Ston1 ENSRNOG00000016688 ENSRNOT00000022370 3 1 1 82 6 12374560 12378092 AAACACAAGTCCCGATCAG 58 12378137 12378156 GATCCCAATCTGAAGGAACC 58 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 1 2 2 80 7 55149591 55149611 TGTAACAGTACCCAGAGTGAC 59 55149650 55151645 GTCACCTGATAACACTGATCTG 59 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 2 2 2 81 12 46989767 46989785 TTTCTCAAAGGAGACGGCT 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Mtmr10 ENSRNOG00000016090 ENSRNOT00000021530 1 1 1 80 1 125157109 125157130 TGAAGAAACTGAAGAGAAGTGG 58 125157169 125157842 GAGTGTTTAAGGAAAGCCCTG 59 NA Rattus norvegicus 81 Ikbkap ENSRNOG00000016725 ENSRNOT00000022836 1 1 1 80 5 73525742 73526082 GCTTATACTCCAGATGCCGA 60 73525681 73525699 AGCCACTTCCGAATCTGAG 60 NA Rattus norvegicus 81 Ikbkap ENSRNOG00000016725 ENSRNOT00000022836 2 1 1 80 5 73510764 73510784 GGAAACCAGCAGTATTAGGAG 58 73509969 73510722 GATGACCTCGCAGATATCC 57 NA Rattus norvegicus 81 Exoc8 ENSRNOG00000019766 ENSRNOT00000026757 1 1 1 60 19 57647617 57647636 GCATCCTTCCTTTACGACAC 59 57647576 57647594 CCACACCTTCCTCAAACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyw3 ENSRNOG00000028328 ENSRNOT00000032874 2 1 1 80 2 260880593 260881442 GAAAGATGACGTGATGGCAG 59 260880532 260880552 TGCACATGGAGGATAAATGGT 60 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 1 2 2 80 9 93105018 93105039 CATTGCGTTAGTGATGTATGGG 60 93105078 93106346 AGAATTGGGTCCTTATCACGA 59 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 3 2 2 80 9 93105018 93105038 CATTGCGTTAGTGATGTATGG 58 93105079 93106346 AGAATTGGGTCCTTATCACG 57 NA Rattus norvegicus 81 Abca1 ENSRNOG00000018126 ENSRNOT00000024564 1 1 1 80 5 69900684 69902138 GTCAGAAATCTGCATGGAAGAG 60 69900625 69900644 TCTCGGTAAACCTTCACCAG 60 NA Rattus norvegicus 81 Spcs3 ENSRNOG00000038933 ENSRNOT00000067375 2 1 1 88 16 40054500 40054519 AGGTGATAATCCAAAGCTGC 58 40054569 40055957 CATTCCTGTTTCCCTTGAGG 59 NA Rattus norvegicus 81 Frg1 ENSRNOG00000009846 ENSRNOT00000013078 3 1 1 80 16 53965153 53975307 TGTTTCAAGATGGGAAGATGG 58 53975349 53975367 TTGCTTCTATATCGCCTGC 58 NA Rattus norvegicus 81 Jph2 ENSRNOG00000008170 ENSRNOT00000010939 2 1 1 161 3 159754058 159754076 CAGAAGGCTGAGATTGCTG 59 159713797 159715484 CTTCTGATACTCCGGACCTG 59 NA Rattus norvegicus 81 Adamts17 ENSRNOG00000037080 ENSRNOT00000055877 1 1 1 80 1 127882799 127887874 GTGTTTGTGACCAGGACAG 59 127939763 127939781 CACGCCTCCTAAGTAAGCA 60 NA Rattus norvegicus 81 Plxnb1 ENSRNOG00000029510 ENSRNOT00000043345 1 1 1 80 8 117841211 117841231 CCGTGAACAGAGATCTTACCT 59 117841269 117841415 CAGGAACTTTCACAAGTGTAGTC 60 NA Rattus norvegicus 81 Zfp295 ENSRNOG00000001623 ENSRNOT00000041177 3 1 1 88 11 38446704 38446722 GAGAACTGTGAAGAGGGCA 59 38446046 38446652 TTGCCTTGCTCAAACTCCT 60 NA Rattus norvegicus 81 Rmt1 ENSRNOG00000013373 ENSRNOT00000017860 2 1 1 87 1 218374044 218374063 CATACACTGCAAAGTGGGAG 59 218373848 218373994 CAGAGCCTTTCTGTGTCCA 60 NA InUTR Rattus norvegicus 81 Cacna2d4 ENSRNOG00000008031 ENSRNOT00000010746 3 1 1 80 4 151304539 151305617 ATGTGTACAACAAAGACCCAG 59 151305657 151305677 GAAAGTTCTCCACAAACACAG 58 NA Rattus norvegicus 81 Cnbd2 ENSRNOG00000019992 ENSRNOT00000027086 3 1 1 80 3 152443946 152443965 TTTATGACTTGGTCGATGCG 59 152444007 152447776 GACACAGTTCTTCATCGCTG 59 NA Rattus norvegicus 81 Ssr3 ENSRNOG00000011148 ENSRNOT00000014912 3 1 1 81 2 156014439 156014457 CTCTGTTCCTGGTTCTGGT 59 156013405 156014397 ATGGACAGAATGTAGTTCACTG 58 NA Rattus norvegicus 81 Slc38a3 ENSRNOG00000016827 ENSRNOT00000023623 2 1 1 80 8 116413485 116414044 TCATCCTCTTCCTGTTCCT 57 116413423 116413441 TCCCAGAAGACTTGAGGAG 58 NA Rattus norvegicus 81 Gal ENSRNOG00000015156 ENSRNOT00000020425 2 1 1 80 1 218655042 218655060 CATTTAGCGACAAGCATGG 58 218654621 218654999 CAGCAACACTTCCTAGTCTC 58 NA Rattus norvegicus 81 LOC691311 ENSRNOG00000021364 ENSRNOT00000034129 1 1 1 80 12 47504266 47504962 TATCCCAGTGACGTTTCCA 58 47504204 47504223 GACAGACTCTTCGTCTTCCT 59 NA Rattus norvegicus 81 Kcnc4 ENSRNOG00000060988 ENSRNOT00000086420 3 1 1 88 2 210227736 210227754 AGAAACAAGAAGGCAGCTG 58 210221532 210227684 TCAACACTGCCTTCTTTCC 58 NA Rattus norvegicus 81 Nit1 ENSRNOG00000003881 ENSRNOT00000005194 1 1 1 80 13 89724460 89724479 CCGAGACATTACTCCTGTCC 60 89724295 89724417 AGATTCCACATTCCCTGGC 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 1 2 2 80 3 148714522 148717230 AAGCTGTATAGGCACATGG 57 148714460 148714480 CTTTCGGTGAAACATCTTGTC 58 NA Rattus norvegicus 81 Ephx3 ENSRNOG00000027319 ENSRNOT00000038961 2 1 1 80 7 14217181 14217359 TCTAACCCTCAGGAGTTCC 58 14217119 14217137 TGCAGAAATAGCATGAGGG 58 NA Rattus norvegicus 81 LOC100909568 ENSRNOG00000046372 ENSRNOT00000075032 1 1 1 60 7 8210186 8210206 GAAACCGAACAGTAACAACCT 59 8210225 8210246 ATTTGAAGCCGAATGTCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a4 ENSRNOG00000031782 ENSRNOT00000047563 2 1 1 80 8 114750549 114751213 CCTTCGAGAATTGTAGGAGC 58 114750488 114750509 CAAAGTCTTCAGAAGAGATGGA 58 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 85 9 44491554 44493588 CCAGATAAAGTATTTCAGCCTAGAC 59 44493628 44493649 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Kiz ENSRNOG00000025141 ENSRNOT00000036527 2 1 1 80 3 141082937 141082957 GAAGCTGAAATGAAGAGGCTG 60 141082998 141105400 CATTGCATCCTTTGCTTGGT 60 NA Rattus norvegicus 81 Tekt1 ENSRNOG00000014973 ENSRNOT00000066740 1 1 1 80 10 58910604 58922193 GTGAACAAGAAACTTGAGCAG 58 58910544 58910564 CACAAGATGTTCGAGTTTGTC 58 NA Rattus norvegicus 81 Dcaf6 ENSRNOG00000003078 ENSRNOT00000004199 3 1 1 80 13 83651185 83653766 CTACTTACGAGATTATGACTGTACC 59 83651129 83651147 CAAACCACCTAACGGTTCC 59 NA Rattus norvegicus 81 Mov10 ENSRNOG00000012946 ENSRNOT00000018061 3 1 1 80 2 207283996 207284015 CCTACATCATCTTTGGGCCT 60 207283649 207283953 GCAAGTGCTTCACTACCTG 59 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 3 1 1 80 14 9317976 9318330 AAACTTACAGGCTTGTGAAGAG 59 9318371 9318389 GGATGCAAGTGTTCTTCCA 58 NA Rattus norvegicus 81 Hnrnpr ENSRNOG00000011910 ENSRNOT00000015971 1 1 1 80 5 154676709 154676727 ACAGAGGAAGTATGGTGGG 58 154676770 154685233 CCTACAAAGACCTCTGTTCC 58 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 2 2 2 80 8 116296768 116297218 CTGGCTCCAGTCTATTCTCC 59 116296079 116296098 ACATCAGGAGTGCTTCAGTC 60 NA Rattus norvegicus 81 Emc10 ENSRNOG00000019532 ENSRNOT00000026445 3 1 1 146 1 100498354 100499928 ATTTGAGATTGGTGATGGCG 59 100497610 100497628 TAGAGGCCATTGACAGCAG 60 NA Rattus norvegicus 81 Crabp1 ENSRNOG00000023633 ENSRNOT00000031175 2 1 1 80 8 59344895 59344914 CGGAGATCAACTTCAAGGTC 58 59344957 59347503 CCCAAGTGGGTAAACTCCT 59 NA Rattus norvegicus 81 Amica1 ENSRNOG00000026702 ENSRNOT00000007588 2 1 1 80 8 49386759 49386778 ACAGAAGAGAAACCTGTGGA 59 49386816 49388151 GTAGTACAGCACGTATTCATTCTC 60 NA Rattus norvegicus 81 Psma4 ENSRNOG00000013493 ENSRNOT00000018173 1 1 1 80 8 59534583 59536451 AACTTAACGAGGACATGGCT 60 59536490 59536512 CAATGAGCCTGAGTTCATTAGTC 60 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 1 2 2 80 13 84098996 84099014 TACCCTCACAGTCAACCCT 60 84087759 84098952 GTGGAGTCTGTAGTGCCTG 60 NA Rattus norvegicus 81 Rasal3 ENSRNOG00000006167 ENSRNOT00000066722 3 1 1 81 7 14406139 14406912 CCAATCCAGCTTCTCTTCAG 58 14406077 14406097 CTTGGAAATGAGAGGAGTGTG 59 NA Rattus norvegicus 81 Ptpn20 ENSRNOG00000020203 ENSRNOT00000027352 3 1 1 80 16 9946068 9946089 TGACTTCAAGTCTGGGTATGAG 60 9946128 9957742 ACACGGGTTGAATCATATGGA 60 NA Rattus norvegicus 81 Serpinb7 ENSRNOG00000002555 ENSRNOT00000003466 1 1 1 80 13 27345796 27345818 CTTGAGCTACAATATCATGGTGG 59 27345857 27353668 CAGCTTGCTTTCAATTTCGG 59 NA Rattus norvegicus 81 Mboat7 ENSRNOG00000054459 ENSRNOT00000078640 1 1 1 80 1 64109647 64113407 CCTACGTATTGAGGAGTGC 57 64113450 64113469 TGAAGCTTAGGTAGTAGCCA 58 NA Rattus norvegicus 81 Olr206 ENSRNOG00000049967 ENSRNOT00000074591 2 1 1 60 2 4800580 4800601 TCTCACTTCAGTTATCACTCCC 59 4800620 4800640 TATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 1 2 2 87 1 219441020 219441543 ATGATGAATGCAAGAGACGA 57 219441593 219441611 TCTACAATGGCTGCAATGG 58 NA Rattus norvegicus 81 Smarcd2 ENSRNOG00000010557 ENSRNOT00000014508 1 1 1 80 10 94453441 94453459 GCCCAGATGAGTAACTTCC 58 94453229 94453399 AATGGTCTCATGGATCTTGAC 58 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 1 1 1 60 2 208225585 208225604 CATCAAGCACTCAAAGAGCA 59 208225544 208225564 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk5r2 ENSRNOG00000037793 ENSRNOT00000057368 2 1 1 123 9 82121026 82121044 AAGACCTCAAGAACGAGGG 59 82121131 82121149 ATAGTCCAATGCTTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl18 ENSRNOG00000025189 ENSRNOT00000003636 3 1 1 81 13 82298643 82298662 GGGACTTTGAGACTACTCGT 59 82298705 82299347 TCAATTTAGCCCTCACAGTG 58 NA InUTR Rattus norvegicus 81 Olr1768 ENSRNOG00000058820 ENSRNOT00000077744 3 1 1 60 X 156210479 156210500 ACTCTTACCACACTGATATTCC 57 156210519 156210539 AGAAATGGTTGATGACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hprt1 ENSRNOG00000031367 ENSRNOT00000045153 1 1 1 80 X 158642767 158642790 GCGCTGAATAGAAATAGTGATAGG 60 158636881 158642731 TGACTGGTCATTACAGTAGCTC 60 NA Rattus norvegicus 81 Abcd1 ENSRNOG00000056524 ENSRNOT00000084088 1 1 1 80 X 157075090 157075193 CCTCCCTATGGAAGTACCAC 59 157075029 157075047 CAGCAGAATCCAGCTTCTC 58 NA Rattus norvegicus 81 AABR07067274.1 ENSRNOG00000038721 ENSRNOT00000051890 1 1 1 60 9 37593326 37593345 TTATCCACTGGTGATGTTGC 58 37593415 37593433 CATACTTCTCCTTCAGCGT 57 NA DesignNoJunction Rattus norvegicus 81 Krt13 ENSRNOG00000014070 ENSRNOT00000018851 2 1 1 80 10 88034199 88034217 AAGACTGACCTGGAGATGC 59 88033960 88034156 CTTCATCTCCTCTTCGTGGT 59 NA Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000078402 1 1 2 82 13 89544802 89545182 ATGAGCTCGCTTAACACCA 59 89543633 89543651 TTAATGCTGCCAGGTTTCC 58 NA InUTR Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000078402 3 1 2 87 13 89544802 89545182 ATGAGCTCGCTTAACACCA 59 89543628 89543646 CCTTCTTAATGCTGCCAGG 59 NA InUTR Rattus norvegicus 81 Pcif1 ENSRNOG00000016870 ENSRNOT00000023202 3 1 1 80 3 161353816 161353838 CCTGGAATATGTTAAACGGATCC 59 161353878 161354461 GAGGCCTCTACTTCCTCTG 59 NA Rattus norvegicus 81 Map3k3 ENSRNOG00000061424 ENSRNOT00000088656 3 1 1 80 10 94311664 94314482 AATAATGAGCTCTCCATCCTG 57 94314524 94314542 CATACTCGCGCTTCTATCC 58 NA Rattus norvegicus 81 Cstl1 ENSRNOG00000004779 ENSRNOT00000006362 3 1 1 83 3 143085246 143085264 TCCAGTCTTACAACAACGC 58 143085311 143088784 CTGTGGTCAACTGCATCTG 59 NA Rattus norvegicus 81 AABR07037570.1 ENSRNOG00000024298 ENSRNOT00000030377 1 1 1 60 X 24117789 24120413 AAGATTTGCAGGAGTGAAGG 58 24117748 24117769 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Tlr10 ENSRNOG00000038722 ENSRNOT00000059124 1 1 1 80 14 45064617 45064640 CTGGGTGAAGAATGAATTACTACC 59 45076172 45081678 TCAGGGTCAAAGTTCCTCTG 59 NA Rattus norvegicus 81 Rpl5 ENSRNOG00000023529 ENSRNOT00000030428 3 1 1 81 14 2864034 2864057 GATGAGGATGCGTATAAGAAACAG 60 2861740 2864000 TCTTATACATCTCCTCCATCATGTC 60 NA Rattus norvegicus 81 Kirrel2 ENSRNOG00000020864 ENSRNOT00000028306 3 1 1 81 1 88918331 88919216 AAAGAGACCTTCCAGGGTG 59 88918268 88918286 ACAGGCTTAATGTGGAGGT 59 NA Rattus norvegicus 81 Kcne5 ENSRNOG00000019176 ENSRNOT00000025923 3 1 1 78 X 113584202 113584223 AACGATGCTTATCTCTACATCC 58 113584145 113584163 GAGTGTAGGCCAGGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 2 2 2 88 20 47253680 47253702 CTTCAAGCTGAAGGAATCTACTG 59 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Xylb ENSRNOG00000014168 ENSRNOT00000019106 1 1 1 82 8 128069206 128069671 TGCAGATAACATGGAGGTCTC 60 128069715 128069733 TCCTCTTGGCCATGAACTG 60 NA Rattus norvegicus 81 AABR07025825.1 ENSRNOG00000032977 ENSRNOT00000048104 3 1 1 96 16 52025220 52025239 CTCGAGTACATGACAAAGGG 58 52025297 52025397 TAAAGCCTGACAGAACTGAG 57 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000064840,ENSRNOT00000065181,ENSRNOT00000087723 1 3 3 80 10 59545343 59545362 GAACGTGTTTGACACAGACC 60 59545404 59545762 ATGAGTTGCTTGATGACGGA 60 NA Rattus norvegicus 81 Adgre5 ENSRNOG00000004489 ENSRNOT00000006152 3 1 1 80 19 24861352 24861373 TGAGTTTCTCTGTTGAAGTCCA 60 24860547 24861312 CGATGAGTTTCTGGATGGTG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 2 2 2 87 3 79731718 79731736 AGAGGCAATAGACGCTTGG 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 1 2 2 80 12 48345339 48346500 ATTGGAAGAAATGTGCTAACCC 59 48346541 48346559 GTAAACGTAGGCTGCTTGG 59 NA Rattus norvegicus 81 Prdx3 ENSRNOG00000010958 ENSRNOT00000015186 2 1 1 80 1 282249577 282249596 GAAGAACCTGCTTGACAGAC 59 282247685 282249535 TGTGGAATGAAGAACTGGTG 58 NA Rattus norvegicus 81 Frrs1l ENSRNOG00000043103 ENSRNOT00000031432 2 1 1 86 5 74013776 74029012 TGTCAGAGGAGGGATACCC 60 74013708 74013726 CCTTAGTCCTTCCGCAGTC 60 NA Rattus norvegicus 81 Zfp87 ENSRNOG00000016462 ENSRNOT00000022527 1 1 1 80 1 37932001 37932019 CCTTGCTCAGTGGAATCTG 58 37931487 37931957 TTACAGGATGCAAGACCCA 59 NA Rattus norvegicus 81 R3hdml ENSRNOG00000027432 ENSRNOT00000031868 2 1 1 80 3 159887399 159887419 CCTTGCTGGATTATCACAACC 59 159887458 159890799 GCTCATCCCAAACCATATACTC 59 NA Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 1 1 1 60 X 115721329 115721350 CTATTACAGTTCATCTCGCAGG 59 115721371 115721389 CTTCTGCTCTAGGATTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 3 1 1 60 X 115721451 115721473 CGACTTAGAATCCATCCTTTCAG 59 115721491 115721511 TTCATCCATGTCAAGGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clic1 ENSRNOG00000029682 ENSRNOT00000068435 3 1 1 80 20 5045444 5048778 TCACATAGTCCAGGTGGTG 59 5048822 5048840 CTCAAGTACCGATGCACTC 58 NA Rattus norvegicus 81 Rnf150 ENSRNOG00000003479 ENSRNOT00000004621 1 1 1 88 19 24221050 24263928 AACTAACAGTGACCAAGAGC 58 24263979 24263997 GTTCTACATCAGACAGCCC 58 NA Rattus norvegicus 81 LOC681006 ENSRNOG00000025953 ENSRNOT00000039453 2 1 1 80 1 279938156 279938178 ACCCTTCTCCTAAAGTCTTACAG 59 279938013 279938116 TTGGGAGTGTTTGACCTGG 60 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260,ENSRNOT00000020955 3 2 2 80 9 42915173 42915480 CAAGCATCAGGCTTAAAGGTC 60 42915113 42915134 AGGGCTTAGTGTAGTGATTCTG 60 NA Rattus norvegicus 81 Acot8 ENSRNOG00000015187 ENSRNOT00000020740 3 1 1 81 3 161263629 161267410 CAGTACTTAAGGGATCCTAACCT 59 161263570 161263588 TCTCAATAGGCACCTCTCG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246,ENSRNOT00000009920 3 2 2 80 3 48705846 48706523 AGTGCAAAGTCCCAATCCA 60 48705784 48705805 TTCGCTTTCAAAGGACAATCTC 60 NA Rattus norvegicus 81 Mesp1 ENSRNOG00000014951 ENSRNOT00000020117 2 1 1 74 1 141533000 141533018 GGAAAGGCAGGAGATGGAG 60 141532700 141532718 CAGGTTTCTAGCAGAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Smc1a ENSRNOG00000003139 ENSRNOT00000004364 3 1 1 80 X 21729749 21729872 TGAACCAGGTGGAAGATGAG 60 21729914 21729933 TTTCTTCCTCAAATTCGCGG 59 NA Rattus norvegicus 81 Osm ENSRNOG00000024390 ENSRNOT00000035591 1 1 1 100 14 84465658 84467211 AACACTGCTTAGTTTGGCC 59 84467275 84467293 TCTTCAACTGGCTGAGGAG 59 NA Rattus norvegicus 81 Osm ENSRNOG00000024390 ENSRNOT00000035591 2 1 1 101 14 84465657 84467211 GAACACTGCTTAGTTTGGCC 60 84467275 84467293 TCTTCAACTGGCTGAGGAG 59 NA Rattus norvegicus 81 Cacng3 ENSRNOG00000012362 ENSRNOT00000016632 1 1 1 80 1 192613968 192695045 GCTTAGAAGGAGCTTTCCG 58 192695086 192695107 CTGCTGTATCCTGTTCATAGTC 59 NA Rattus norvegicus 81 Cacng3 ENSRNOG00000012362 ENSRNOT00000016632 3 1 1 80 1 192613967 192695044 TGCTTAGAAGGAGCTTTCC 57 192695086 192695106 TGCTGTATCCTGTTCATAGTC 57 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 3 2 2 80 2 116364364 116369571 AGTGAAGCAGTTACCACCA 59 116364302 116364323 AAGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 Smc2 ENSRNOG00000022325 ENSRNOT00000066226 2 1 1 80 5 68738228 68739802 CGCTCAGAATCTTGTTGGT 58 68739845 68739864 ATCGCTTTCTGAAGTTCTGG 58 NA Rattus norvegicus 81 LOC100910697 ENSRNOG00000050594 ENSRNOT00000050480 1 1 1 60 X 95352419 95352438 CAGTGACTCAGTTCATCCTC 58 95352461 95352479 AAGAGTGGATAGCGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000065115,ENSRNOT00000084198 2 2 2 93 2 178117637 178169840 GGTCATCACAGGTCCAGAC 60 178169896 178169915 TTTCTCTAATGCTGGACGCT 60 NA Rattus norvegicus 81 LOC681355 ENSRNOG00000039063 ENSRNOT00000059744 2 1 1 60 X 18489749 18489769 CAGTGTAAAGAACCCTTGCTC 59 18489788 18489809 TCGATCTATGAAGAATCTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc43 ENSRNOG00000002748 ENSRNOT00000003685 2 1 1 88 10 90648901 90650191 GAAGAGGATGAAGCAGATGAG 58 90646749 90646768 ACATTGGTGTTTCGGAACAG 59 NA Rattus norvegicus 81 Poteg ENSRNOG00000012218 ENSRNOT00000016348 2 1 1 80 16 68830439 68830628 CTCTCATAAAGTCTGTCCAGTG 58 68830380 68830398 CGATAACGTTCGGATCAGC 59 NA Rattus norvegicus 81 Ptgds ENSRNOG00000015550 ENSRNOT00000020926 3 1 1 80 3 2688502 2688927 CTTTCAACAAGACAAGTTCCTG 58 2688443 2688461 TCTTTCTTCTCCCGGAACC 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 3 1 1 60 2 199529074 199529094 AGCCAACTTCAACTATGACAG 58 199529034 199529054 CACCAATATGTCCATGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata1 ENSRNOG00000047663 ENSRNOT00000075082 3 1 1 89 X 15279202 15279220 TACCTGTGCAATGCTTGTG 59 15279273 15280323 CTTGCTGACAATCATTCGC 58 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000089893,ENSRNOT00000011978,ENSRNOT00000078703 2 3 3 82 3 159950195 159954628 CTTCTGGATGACCAGGTGG 60 159954674 159954692 AACACCATGGACCTCTTGG 60 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075894 1 4 5 84 10 89176901 89177706 TTATCAATGGGTTTCCAGGAG 58 89177752 89177770 TTCCTCCTCTGTGTCTTCC 58 NA Rattus norvegicus 81 AABR07054708.1 ENSRNOG00000050969 ENSRNOT00000075542 3 1 1 105 3 167270463 167270482 AACTTCACTCAGGAAGAGTG 57 167270062 167270398 AAATGTATCCTATAGCGCTGAG 58 NA Rattus norvegicus 81 Gak ENSRNOG00000000048 ENSRNOT00000000064 1 1 1 80 14 2116846 2120746 TGGAGGAAGAGATCACGAG 58 2120784 2120808 CAATAGGGAAGTTAGAATACAGGTC 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979,ENSRNOT00000001135,ENSRNOT00000001138 2 3 3 83 20 5161543 5162085 GCCATCTTGAGAATGATTCTG 57 5161480 5161498 AATAGCTTTCTTGGCTGGG 58 NA Rattus norvegicus 81 Gjc1 ENSRNOG00000048838 ENSRNOT00000073372 3 1 1 82 10 90782876 90784291 TGGTTAACAGGGCAAACCA 60 90782812 90782832 GTCGAATGGTTGTGTATCTCC 59 NA InUTR Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 1 2 2 80 14 7618384 7628442 AGATATGGACCTCAGCATCAG 59 7628484 7628502 TAGACGTAGAGGCAGAGGG 60 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 2 2 2 85 10 59900971 59900991 CCCTGAGAATTGAAGATCCTG 58 59901038 59903779 GTTGTTGCCTCTGTATCCC 58 NA Rattus norvegicus 81 Dnajc14 ENSRNOG00000006844 ENSRNOT00000037332 2 1 1 80 7 3237990 3238452 GAAGGAATATGAGATGAAACGG 57 3238492 3238511 TCATCTTGTAGCTTCGACAG 58 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 3 2 2 80 1 255063274 255063292 CCACAAATCGCTATCTGCC 59 255063333 255067146 CTTCTTCATGAGACCCTTTACC 59 NA Rattus norvegicus 81 LOC100364877 ENSRNOG00000049646 ENSRNOT00000075721 1 1 1 60 X 134389587 134389606 AAAGAAGTATGAAGCCCTGG 58 134389628 134389647 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Utp23 ENSRNOG00000004387 ENSRNOT00000005828 1 1 1 80 7 91387944 91387964 AATGTCTCCTGTCTATGGTGG 59 91388000 91389076 CTTTCACAGATAAGTTCTGATCCTG 60 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076499 1 1 3 144 1 167337332 167347349 CTGAGCTGGTCACTACTTCC 60 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 3 2 2 80 2 180118951 180123367 AAGCAAAGCGGTGAATCTG 59 180123410 180123429 ATGGACACAGAGAAGTTCCG 60 NA Rattus norvegicus 81 Gdpd3 ENSRNOG00000019685 ENSRNOT00000026688 2 1 1 80 1 198200761 198200781 TCCAGAAATTTCCAAGGACTC 58 198200823 198200919 CCATGTTGGCTACCTTGTG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655,ENSRNOT00000036502 1 2 2 80 X 26365369 26376402 AGACAAAGAATTCATCCCACAG 59 26365310 26365329 TGCTTCAGTTTATATGCCCG 59 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964,ENSRNOT00000090001 1 2 2 80 7 70767895 70770570 GAGAACCAGATGAGAGTTCC 57 70770611 70770631 GACCCTTTGATATTCCTCCTC 58 NA Rattus norvegicus 81 Prpf38b ENSRNOG00000020438 ENSRNOT00000027738 2 1 1 80 2 211708586 211708605 AAGAAAGACGGAAAGGAAGG 58 211708160 211708546 CAGTGATCTTCTTGGAGATCTG 58 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087520,ENSRNOT00000078309 1 2 3 78 20 5227632 5227650 CTACACTCCTCTCCCTGGA 59 5227308 5227326 CTGGATCTCCTTCTCAGCG 60 NA DesignNoJunction Rattus norvegicus 81 Cish ENSRNOG00000029543 ENSRNOT00000040056 2 1 1 83 8 116057696 116057715 ATGAACCGAAGGTGCTAGAC 60 116057761 116058001 AGTACCAACCAGATTCCCG 59 NA Rattus norvegicus 81 Myo5c ENSRNOG00000008356 ENSRNOT00000011768 1 1 1 80 8 82182749 82182770 CTGAAATTGCGAAGGACTACAG 60 82182811 82185255 CAGGGTAATCCAGTTCCGT 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 2 2 2 138 1 80606779 80609217 TGATCAAGACTCGGAACTGG 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Ankar ENSRNOG00000003991 ENSRNOT00000005313 2 1 1 80 9 53024892 53024912 ACCTTTACAGAGGATTCAGGA 58 53024951 53029229 GATCACATAGTAGCTCTTTCCA 58 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 3 2 2 80 3 72450763 72450913 ATGTTCTTTGTGATCAGCCT 58 72450954 72450974 CTTTGAGAAGAGGAGGATCAG 58 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000007870 2 1 2 80 13 111971478 111972199 GTTCAGACCAGAAATGCTCC 59 111971417 111971438 TGATATGCCATTTCTCTTCCGA 60 NA Rattus norvegicus 81 Tmed5 ENSRNOG00000000073 ENSRNOT00000000083 2 1 1 80 14 2615877 2621981 GCGTTCATACTGTAGAGACTG 58 2622022 2622041 TGACCTTCTCAGAGATGGTG 59 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 2 2 2 80 20 50447314 50448805 TCCTAAAGGGAAGAATGAAGGT 59 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Myl4 ENSRNOG00000050675 ENSRNOT00000072480 2 1 1 101 10 92635219 92635514 AAGCCTGAAGAGATGAATTCCA 60 92635576 92635594 GAAGTCCTCATAGGTGCCC 60 NA Rattus norvegicus 81 LOC679811 ENSRNOG00000009837 ENSRNOT00000013260 1 1 1 80 2 182925424 182925444 TGGATTTGAAGTGCTAGACTG 58 182924965 182925384 TCCGGAGTAAACACAATACTG 58 NA Rattus norvegicus 81 Snupn ENSRNOG00000005426 ENSRNOT00000007261 2 1 1 80 8 61626329 61634896 CGCTATGCTAATCAATTGATGC 59 61634936 61634955 CACAACCACAATCCATTCCT 59 NA Rattus norvegicus 81 Snupn ENSRNOG00000005426 ENSRNOT00000007261 3 1 1 81 8 61622930 61622953 CAATACAAGTCCAAGTATAGCTCC 59 61622993 61626206 CCAACCGCTTGGATTTCTG 60 NA Rattus norvegicus 81 Hapln3 ENSRNOG00000022321 ENSRNOT00000032174 2 1 1 87 1 140835020 140835038 GGACTTCCGTTCTACAACG 58 140832019 140834970 CATTGAATAGGCCTTCTCCA 57 NA Rattus norvegicus 81 Hapln3 ENSRNOG00000022321 ENSRNOT00000032174 3 1 1 87 1 140835019 140835037 GACTTCCGTTCTACAACGG 58 140832018 140834969 CCATTGAATAGGCCTTCTCC 58 NA Rattus norvegicus 81 Zglp1 ENSRNOG00000042601 ENSRNOT00000068598 3 1 1 85 8 22082066 22082084 CTTGTAGGACCCAGAGGAC 59 22081820 22082018 TTTCTTGTACCTGATGCCAC 58 NA Rattus norvegicus 81 Mdk ENSRNOG00000017560 ENSRNOT00000033978 1 1 1 108 3 80842059 80842077 CAAGGGACCCTGAAGAAGG 60 80841286 80841987 TTCCTTTCTTGGCTTTGGC 59 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805,ENSRNOT00000037559 3 2 2 80 20 54094597 54094615 ACCAATGGATTACGGACAG 57 54058971 54094555 ATCCCAAGTTCCAATCTTCTC 58 NA Rattus norvegicus 81 Polr2a ENSRNOG00000028834 ENSRNOT00000068013 2 1 1 80 10 56350763 56350784 ATTGCAGATTCCAAGACTTACC 59 56350572 56350728 CTTCTCAATGACCTCTATTACATCC 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 2 2 3 80 2 210723673 210724720 TATAACCCTGACTTTGAGAAGC 58 210723614 210723632 CAGGAACTCGGAGTAAAGC 58 NA Rattus norvegicus 81 Ch25h ENSRNOG00000019141 ENSRNOT00000025856 3 1 1 60 1 252808290 252808308 TCTGGGACAGCATAAGGAC 59 252808248 252808267 AAGATGACTGGGAAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680489 ENSRNOG00000026351 ENSRNOT00000035538 1 1 1 60 X 44999853 44999876 CATCTTTCCATATGCCGTTATACC 60 44999816 44999836 GCCACTACATTAGCAATTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 3 1 1 116 7 80796065 80796083 TAGACACAGAGGACAGTGG 58 80793180 80795985 AGTATCTGTTTGCCTGGGA 58 NA Rattus norvegicus 81 AABR07029989.1 ENSRNOG00000047607 ENSRNOT00000075322 2 1 1 81 10 62414336 62414358 CAACAACACATCTTCTTGCTC 58 62414398 62414419 TACTAATTGCCAGGACAATGAG 58 NA Rattus norvegicus 81 Fiz1 ENSRNOG00000016574 ENSRNOT00000022236 1 1 1 61 1 72382075 72382093 GATTCCGAGACTCCACTGG 60 72385129 72385147 GTAGGGCTTCTCACCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Pctp ENSRNOG00000002425 ENSRNOT00000003295 2 1 1 80 10 77496621 77498900 ACCAGTACGTGAAAGAACTC 58 77496560 77496578 GAGGGAAAGGGTACTTCAC 57 NA Rattus norvegicus 81 Olr1065 ENSRNOG00000049157 ENSRNOT00000048396 2 1 1 60 7 9294835 9294855 ATCATTCTGTTGACTCTGCTG 59 9294874 9294895 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 3 3 3 94 8 120444317 120444337 TCAGAAAGTCTGGATGAGGAG 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Chrnb4 ENSRNOG00000014427 ENSRNOT00000019458 1 1 1 80 8 59615269 59615290 ATCTACAGGAAGCATTAGAGGG 59 59610620 59615230 CCTCGATGACACTTTGATCTC 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073,ENSRNOT00000004699 3 2 2 80 10 96265114 96265132 CACGGAATGACTTCATGGG 59 96264846 96265071 GCAACTTGTACCATCCACTG 59 NA Rattus norvegicus 81 Hnmt ENSRNOG00000005223 ENSRNOT00000007471 3 1 1 81 3 905792 909615 TCTTGTGTCAGGAACTAGTGG 60 905731 905749 ATACTGGCAGAGGTCATCC 59 NA Rattus norvegicus 81 Glipr1l1 ENSRNOG00000026634 ENSRNOT00000039475 2 1 1 80 7 54837646 54853779 ATACACAGGTAGTCTGGGC 59 54837584 54837602 CAGCCGAATATCCTGTGAG 58 NA Rattus norvegicus 81 RGD1565459 ENSRNOG00000033613 ENSRNOT00000042056 3 1 1 74 10 97505243 97505261 CAACTACAGCAAGCTGCTG 60 97505187 97505206 TAGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad21 ENSRNOG00000004420 ENSRNOT00000006209 2 1 1 80 7 91522317 91522341 AGAGTAGAAGAGATAACCATGAGAG 59 91521683 91522281 CATTCCAAAGTCACCGAAGTC 60 NA Rattus norvegicus 81 Rp9 ENSRNOG00000029456 ENSRNOT00000065367 1 1 1 80 8 23465464 23469255 GTCAAAGTTATGCAGTGTTGG 58 23465404 23465423 GCCTTTGATAAAGAAAGGGC 58 NA Rattus norvegicus 81 Rp9 ENSRNOG00000029456 ENSRNOT00000065367 2 1 1 80 8 23465463 23469254 TCAAAGTTATGCAGTGTTGGC 60 23465403 23465423 TGCCTTTGATAAAGAAAGGGC 59 NA Rattus norvegicus 81 Fcho2 ENSRNOG00000015334 ENSRNOT00000020692 2 1 1 80 2 28950094 28953041 GAGTGGAATTAATGAAATACCCAGG 60 28950038 28950056 GCTAAGGGAGCAGTAGGAG 59 NA Rattus norvegicus 81 Msx1 ENSRNOG00000006876 ENSRNOT00000009101 2 1 1 183 14 77712767 77712785 GAGAAGCTAGATCGGACCC 59 77714970 77714989 TAGACAGGTACTGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000061114 2 1 2 80 20 4774544 4896479 CGGTTCATTATCGAAGTCGG 59 4774483 4774501 CTCCATCCTCGGATTCTCC 59 NA Rattus norvegicus 81 AABR07055668.1 ENSRNOG00000025369 ENSRNOT00000035110 2 1 1 85 7 7574139 7574159 TGAATTCCTCTGCACAGCA 60 7574203 7574226 GCAACTACCATATGTTGTAGAGAC 59 NA Rattus norvegicus 81 Trim25 ENSRNOG00000002341 ENSRNOT00000055674 3 1 1 80 10 76344435 76344453 TATCTGCCTGGTAGAGCAC 59 76344497 76348630 TGCCTCAGTTTGTTCTCCA 59 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 1 1 1 80 3 161469566 161474546 CAGACGAAAGATTATGCGGAG 59 161469506 161469525 TGTGTTGAGGAAGATCAGGT 59 NA Rattus norvegicus 81 AABR07066201.1 ENSRNOG00000022509 ENSRNOT00000061893 2 1 1 122 9 4733492 4733510 GAAGCTGATGAAGAAGCGA 58 4734030 4734048 CATCACTCCTCAATAGGGC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rplp0 ENSRNOG00000001148 ENSRNOT00000001518 2 1 1 81 12 46792994 46793110 TGAAATCCTGAGCGATGTG 58 46792931 46792950 GTTCAACATGTTCAGCAGTG 58 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 2 2 2 80 5 157475742 157475761 CTTGATTGGATTCAGCCTGG 59 157475804 157494440 ATCCCTTGGCAATCTTGCT 60 NA Rattus norvegicus 81 Wdr47 ENSRNOG00000020330 ENSRNOT00000055862 3 1 1 80 2 211406563 211409934 CCCAGCATTTGGAATTTACC 57 211409976 211409995 AATCGTCTTTAGAAGGGCAG 58 NA Rattus norvegicus 81 Dnai2 ENSRNOG00000024523 ENSRNOT00000038852 2 1 1 80 10 103287040 103287058 CATCACCAGAAAGGAGCAG 58 103287102 103292225 ATGAACTTGGTTGGCAAGG 59 NA Rattus norvegicus 81 Ssh1 ENSRNOG00000000695 ENSRNOT00000044751 3 1 1 80 12 48431738 48433276 TCTAAGGAAATCCGAAATGAGC 59 48433314 48433335 CATCTCGTTATCGATGAACTCC 59 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 1 3 3 80 8 22532320 22532339 AATACGGGATGTGGAGAAGG 59 22532381 22534332 TTGTAGACGTTCCTCTGCTC 60 NA Rattus norvegicus 81 Txndc9 ENSRNOG00000018593 ENSRNOT00000025098 3 1 1 80 9 44654519 44656402 CAGAAACAAGAATGGCTTTCCA 60 44654460 44654482 CTTGACCTCTTGAAAGAAGTCTC 59 NA Rattus norvegicus 81 LOC689959 ENSRNOG00000051792 ENSRNOT00000080736 3 1 1 96 8 55167378 55167399 TTCCAGAAGAGAAACAAGACAG 58 55165821 55166410 TTTCATAGTCCTTCGTGCC 58 NA Rattus norvegicus 81 Gyltl1b ENSRNOG00000006353 ENSRNOT00000051258 2 1 1 80 3 81277386 81277404 CTCACACCCTACGTCTTCC 60 81277017 81277342 CTCAATAGAGGCCCTGAGG 59 NA Rattus norvegicus 81 Esyt1 ENSRNOG00000060753 ENSRNOT00000082107 1 1 1 80 7 2925540 2925631 AATGAGCGGTTTGAATGGG 59 2925478 2925497 GGAGGAGTTTGACTTCACAG 58 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 2 1 1 84 8 36909476 36909928 TGTACAAGTCTCATACAATGGG 58 36909973 36909991 CCCAAGTTTCTTCTGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Hhatl ENSRNOG00000019404 ENSRNOT00000026261 3 1 1 80 8 130424961 130424979 CATTACCGCACTCTACGTC 58 130423087 130424819 TGGTCATACACGTATTTGCA 58 NA Rattus norvegicus 81 Igf1r ENSRNOG00000014187 ENSRNOT00000019267 2 1 1 80 1 129180758 129180780 CATAGAAAGAGGGTGTCTGG 57 129186988 129187007 CACGTACACTAGGAACAGAC 58 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086,ENSRNOT00000043518 2 2 4 80 8 39234881 39235248 TTACCCAGGCTTAATGATCAC 58 39234821 39234840 ACATTCCGAATGTCAATGGT 58 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086,ENSRNOT00000043518 3 2 4 80 8 39220713 39221108 CTTATCCTATTAAGAATGAGGTGGC 59 39220657 39220676 TCGAATGAAACGTGTAGGTG 58 NA Rattus norvegicus 81 Kdm2a ENSRNOG00000019145 ENSRNOT00000054850 1 1 1 80 1 219599889 219599908 GGCTGCTATACTGACTTCCA 59 219598510 219599846 CCAGAAGACCTTTCCACCT 59 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 1 2 4 80 14 84286841 84286859 CCTTCAACCTGGTCAAGTC 58 84286901 84287178 GCTCTTGTTTCCAGTTACCTC 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299,ENSRNOT00000085725 3 2 2 98 8 87229255 87229960 CCCTAGTGCTTTGCTTAATCC 59 87229177 87229195 AACATGCTGTTGGCAATGG 60 NA Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 1 1 1 80 2 33918546 33920658 GAATTCACAAGAAGTGCCTG 57 33918485 33918505 AAAGTCAGTCTATTGCCATCC 58 NA Rattus norvegicus 81 Ptgdr2 ENSRNOG00000036631 ENSRNOT00000054808 1 1 1 60 1 226993478 226993496 CTTGGAGGAGATGGTCCAG 59 226993520 226993538 GTGGTCAATATAGCGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgdr2 ENSRNOG00000036631 ENSRNOT00000054808 2 1 1 60 1 226993932 226993951 CCCTATTTCGTGTTCAGGGA 60 226993973 226993992 TGTAATAGCACATGATGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem25 ENSRNOG00000014218 ENSRNOT00000067558 1 1 1 80 8 49102547 49102741 GTCCTTCTCTGATATCTAGTGACTC 60 49102491 49102509 ATGGGAGGGACATGTTCTC 59 NA Rattus norvegicus 81 Myo6 ENSRNOG00000011852 ENSRNOT00000016428 3 1 1 80 8 87680961 87685384 TCCGACTCACTATTCCCAG 58 87685428 87685446 AGTGCCTGATGATAAAGCC 58 NA Rattus norvegicus 81 LOC100910294 ENSRNOG00000046661 ENSRNOT00000072622 1 1 1 60 8 42846902 42846923 ATCTATGTGTTGACAGTAGTGG 58 42846863 42846881 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hirip3 ENSRNOG00000029061 ENSRNOT00000039964 1 1 1 80 1 198299044 198299062 TTAAGAGGTCTCCTGCTCC 58 198299105 198299380 GTGTAGAGCTGGATTCTGAC 58 NA Rattus norvegicus 81 Lsm1 ENSRNOG00000015375 ENSRNOT00000020721 2 1 1 81 16 71051106 71052472 TCAATTTGCTAACCTAGTGCTC 59 71051046 71051066 AATCCCTCGAGGAATATCACC 59 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 2 1 1 81 5 69107159 69107177 TCTAAGAACCACACCACAC 57 69107094 69107114 CCTTAAGAGACTGTGACCG 57 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 3 1 1 82 5 69107093 69107114 CGGTCACAGTCTCTTAAGGG 60 69107030 69107049 TTCAGGCCTTTCTTGTTGTG 59 NA Rattus norvegicus 81 Etv2 ENSRNOG00000024288 ENSRNOT00000031873 1 1 1 82 1 89093253 89093272 TCTATTTCCCTGAAGTGGCA 59 89092990 89093208 CTCTGGGAACCCTTTCCAG 60 NA Rattus norvegicus 81 Scamp5 ENSRNOG00000054008 ENSRNOT00000080012 3 1 1 81 8 62225220 62226172 AGGCCTTCAAGACAGACAG 59 62225157 62225175 TGGATGATGCTGATGACCA 59 NA Rattus norvegicus 81 Rnf7 ENSRNOG00000011663 ENSRNOT00000015821 1 1 1 81 8 104327704 104329999 AGAGGACTGTGTTGTGGTC 59 104327641 104327659 GTTGTTCTGCTTCACCCAC 59 NA Rattus norvegicus 81 Prdm10 ENSRNOG00000007853 ENSRNOT00000010423 2 1 1 80 8 32465425 32466916 CATGATTTGTGGTGTGAGGA 58 32466958 32466977 GTTAGGGATTGGATGCAAGG 59 NA Rattus norvegicus 81 Ccdc15 ENSRNOG00000032180 ENSRNOT00000040901 2 1 1 81 8 39791573 39791591 CACTGAACAGCAAGCTCTG 59 39790145 39791530 CAGATATTGCTTCTGACGCTC 59 NA Rattus norvegicus 81 Pxylp1 ENSRNOG00000012480 ENSRNOT00000017085 1 1 1 80 8 104757518 104757536 CAATCGCTTCTTGGTGCTG 60 104741194 104757476 GGGATCAGATGAAAGAACTGC 59 NA Rattus norvegicus 81 Dhx29 ENSRNOG00000010369 ENSRNOT00000013854 1 1 1 80 2 44804268 44804289 GAAGAATCTTCCCAAGAGTCCA 60 44804327 44804788 ACGACTCTTACCCTACATTTCC 60 NA Rattus norvegicus 81 Olr8 ENSRNOG00000030070 ENSRNOT00000050607 1 1 1 60 1 70496226 70496245 TTCCTGAGTCTTTACCTGCT 58 70496185 70496208 TGAAGATGAGGTAGATGATGAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a7 ENSRNOG00000013912 ENSRNOT00000019172 3 1 1 80 2 218937567 218937585 ATATTGGCTGGATTGGCAG 58 218934770 218937523 TTCCGCTCTAACATACCCA 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 3 1 1 93 1 220323978 220324239 TTCAATCGAATCAGCCAGG 58 220324294 220324314 CCTTGAATCCCTTATGAACCA 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 1 1 1 60 8 43534486 43534537 GGGTAAAGCTGAAGACAAGG 59 43534445 43534463 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Olr199 ENSRNOG00000029755 ENSRNOT00000046417 2 1 1 60 1 170125803 170125827 TCCTTATCTTGATCACCATCTACTG 60 170125844 170125863 AGAAACTGGTACATTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adrm1 ENSRNOG00000055984 ENSRNOT00000091941 3 1 1 88 3 175548726 175548744 TCGTGTACATCCAGCAGAC 60 175548793 175549431 GATAATCAAGTCATCCTCCACG 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 3 1 1 93 2 42727684 42727702 CTCTGGTATACCTGCTGGC 60 42727759 42727807 CCCAATCTGCTTAGCTCGA 60 NA DesignNoJunction Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 3 2 2 80 5 78315659 78316111 GCACTTATCTGTACAGCAGG 59 78315598 78315616 GAGCAGGGATGTACTCCTG 59 NA Rattus norvegicus 81 Dph7 ENSRNOG00000008102 ENSRNOT00000046898 1 1 1 80 3 2171589 2173321 TGATGGAATGTGAGAAGAACAG 59 2173359 2173380 GTGATAAGGATAGACAGCTCTC 58 NA Rattus norvegicus 81 Snx33 ENSRNOG00000017382 ENSRNOT00000023428 2 1 1 89 8 61592716 61592734 ACCTCTTCCAAATGCTCGA 59 61586217 61592663 CAAAGGCACCTTTCTGCAG 60 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 2 2 2 80 8 62529662 62529684 CAGAGAACACTTGGTTATGATGG 60 62529356 62529623 TACTTCTGCTTCCTGGTACG 59 NA Rattus norvegicus 81 C4a ENSRNOG00000000443 ENSRNOT00000086027 3 1 1 80 20 4502351 4502802 GACCAAAGAGAACCTGAGC 58 4502289 4502307 TCGCTAATAGCCTTCTGGA 58 NA Rattus norvegicus 81 Vma21 ENSRNOG00000048606 ENSRNOT00000071269 2 1 1 81 16 70146607 70147282 TATATTTGAAGGTGCCCTTGG 58 70146546 70146565 CACATGAACAGCAACAACAG 58 NA Rattus norvegicus 81 Rnf5 ENSRNOG00000000438 ENSRNOT00000000501 1 1 1 84 20 4367439 4368460 CTCTATTGTTGGCCCTGTC 58 4367280 4367299 TGCTTATTCCGGCTTTACAC 59 NA Rattus norvegicus 81 Eepd1 ENSRNOG00000006931 ENSRNOT00000009342 2 1 1 117 8 26755384 26757632 GAAAGTGTTCACGGGTCAC 59 26757713 26757731 CAATTCAGCAAGCACAGGG 60 NA Rattus norvegicus 81 Stk19 ENSRNOG00000048929 ENSRNOT00000072446 1 1 1 178 20 4516992 4517010 GAGAGCGGATCCTCTAAGG 59 4510512 4516679 CTTGAAGCTCCTTCAGCTG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000082951 1 1 8 80 20 4458299 4458317 AGATTCCTCCTCTATGGGC 58 4458361 4458518 AGCATTCATCGACTCTGTG 58 NA Rattus norvegicus 81 Slc25a54 ENSRNOG00000027522 ENSRNOT00000038315 3 1 1 80 2 211921489 211921507 TCAGCAGAGGCTATGTTCC 59 211921548 211922126 TCTTCAGAAGCTCAAAGATGGT 60 NA Rattus norvegicus 81 Skiv2l2 ENSRNOG00000010125 ENSRNOT00000060695 1 1 1 80 2 44738669 44738690 CTCTTCAATGACCTTTCTTCAG 57 44736829 44738630 GGGCATCTCACTAGAATTCTC 58 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230,ENSRNOT00000064905 2 2 2 80 20 47684076 47684094 TCCGGTTTGTGAAAGATGC 59 47684137 47686128 CATTGCCATCAATCTCATGC 58 NA Rattus norvegicus 81 Ubxn11 ENSRNOG00000015476 ENSRNOT00000021342 1 1 1 80 5 152339614 152340062 ACGGAGATGAAGATGAGGTG 59 152340105 152340123 CTCCATAGCAGGAAGGGAG 59 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 1 2 2 80 2 227181288 227188186 CTTTAACAGAGTTGCCACTCC 59 227181228 227181246 CGTTCGAAGTCTGGAACCT 60 NA Rattus norvegicus 81 Rnf26 ENSRNOG00000007720 ENSRNOT00000010134 1 1 1 60 8 48448933 48448954 CTGAACATGATCTCTAACGGTC 59 48448894 48448913 CAATGGCACAGATGTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm10b ENSRNOG00000000320 ENSRNOT00000000351 1 1 1 105 20 48309840 48309858 CTAGCTAGCTGTCCCTGAC 59 48309581 48309771 CTAGGTCTCCACCTTCCTG 59 NA InUTR Rattus norvegicus 81 Ppp2cb ENSRNOG00000015182 ENSRNOT00000020663 3 1 1 81 16 62282342 62282366 TATTCATGGGTGACTATGTAGACAG 60 62281410 62282304 GGATAGCGCACCTTTAATGC 60 NA Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 2 1 1 60 20 42842847 42842865 ACAGGTGAACTCGGAAGAC 59 42842887 42842907 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1339 ENSRNOG00000059611 ENSRNOT00000081179 3 1 1 60 8 43920131 43920149 CCATTTCCTTTGGTGCCTG 59 43920089 43920108 TTGATGCCTCCAATGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364116 ENSRNOG00000030426 ENSRNOT00000050041 2 1 1 60 20 8484549 8484569 ATCGTTTCCAGATGAGAATCC 58 8484590 8484609 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1193 ENSRNOG00000028864 ENSRNOT00000050206 1 1 1 60 8 21305640 21305664 CACTATCCAGTCATTATGAATCCTC 59 21305681 21305700 TGAACCACGATACCAGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC108572.1 ENSRNOG00000060412 ENSRNOT00000030174 3 1 1 82 20 2047153 2047176 TTCAGGAGAAGAGCATAGATACAC 60 2047217 2047348 GTGAAGGCTCCCATCTCAG 60 NA Rattus norvegicus 81 Olr1691 ENSRNOG00000047094 ENSRNOT00000052186 2 1 1 60 20 794609 794631 GCCAGATATTCTCTACAGTTCTC 58 794571 794595 GAGAAGACCTTAGTTTGACTTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrsl1 ENSRNOG00000026049 ENSRNOT00000018892 2 1 1 80 20 48866969 48873461 GAGTTTGCCATGGGATCTG 59 48866907 48866928 TCTGTACTGCTTTGAATACGTC 59 NA Rattus norvegicus 81 Olr1675 ENSRNOG00000047267 ENSRNOT00000048277 3 1 1 60 20 34484 34505 GTAGTAACTCCTACACTGAACC 58 34445 34466 CCCTCTTTACATCCTTATTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2e2 ENSRNOG00000014422 ENSRNOT00000058872 3 1 1 81 16 62114546 62114960 AGAAAGTGGCCTCTATTCAG 57 62114484 62114502 GCCAAGTGTTCATTGTGAG 57 NA Rattus norvegicus 81 Invs ENSRNOG00000008632 ENSRNOT00000011622 3 1 1 80 5 64175142 64175981 AGATCTACGGTTGTTCTCAGG 59 64176022 64176041 AACTGAGATGAAGCACAGGA 59 NA Rattus norvegicus 81 Adnp ENSRNOG00000010975 ENSRNOT00000014595 1 1 1 103 3 164946963 164964580 CAGCCAAGAAACTATGTTCCA 59 164946880 164946900 AGTATTCCAACCCAATGTCAC 58 NA InUTR Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 2 2 2 80 16 80911436 80912864 CCACCACTTCATAAAGGATATCG 59 80912902 80912922 GGCAGTCCTATTGTTGTACAC 59 NA Rattus norvegicus 81 Myom2 ENSRNOG00000011754 ENSRNOT00000015908 1 1 1 80 16 79598489 79598507 TTTACGAAACCGAGACACC 58 79598257 79598447 GGTCCTTCTTAGACAACTTGG 58 NA Rattus norvegicus 81 Pex14 ENSRNOG00000013498 ENSRNOT00000018167 2 1 1 82 5 165788513 165788531 GTCCAGGAGCTACTGAGAC 59 165785818 165788467 GTTGATGTGGTAGCCTTGG 59 NA Rattus norvegicus 81 Xkr7 ENSRNOG00000009180 ENSRNOT00000012156 2 1 1 145 3 148530535 148530553 GTCTGTTGGAGACCTTCCT 59 148531671 148531689 GTAGGATGCCAGTGTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769,ENSRNOT00000081338 2 2 2 80 3 66675267 66675287 TCCCTTGTGATTCTCAATGAG 58 66719385 66722390 TGCATTCTGGGATTCTTGTG 59 NA Rattus norvegicus 81 Atp9a ENSRNOG00000049484 ENSRNOT00000071672 1 1 1 82 3 165421979 165424512 GCATCAAGGTTTGGATGCT 59 165421915 165421934 GTTTCTGGTCACCAGATGTG 59 NA Rattus norvegicus 81 AABR07054909.1 ENSRNOG00000047007 ENSRNOT00000073650 3 1 1 80 3 173371755 173371777 TGAATCCTTCTCAGAAGAGTCTC 59 173371378 173371719 CCCAAATGTATCCTATAGCACTG 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 1 2 2 80 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731181 157731199 ATTTGTTGGTTTGCAGCCA 59 NA Rattus norvegicus 81 Defb11 ENSRNOG00000038151 ENSRNOT00000058063 3 1 1 84 16 75149579 75156272 ATGACACTCCAGTTGTTGG 58 75149513 75149532 TAACGGTAACAGTACCCTCC 59 NA Rattus norvegicus 81 AC127963.1 ENSRNOG00000048080 ENSRNOT00000075547 3 1 1 77 3 173838962 173838980 AAGAAACTCCTGGCTGACC 60 173838756 173838775 GATGATGTCTTCCTTCTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Mfhas1 ENSRNOG00000011431 ENSRNOT00000015203 2 1 1 165 16 60205480 60205498 CCAAATCCACACGCTTTCC 60 60128248 60135491 AGAAAGTACGAAGGTACTTGGA 59 NA Rattus norvegicus 81 Efnb2 ENSRNOG00000014648 ENSRNOT00000019675 1 1 1 80 16 86669236 86669254 CTGGATAACCAGGAGGGAG 59 86669297 86670055 AGCAGAACTTGCATCTTGTC 59 NA Rattus norvegicus 81 Zgpat ENSRNOG00000014235 ENSRNOT00000019084 3 1 1 81 3 176879226 176879244 GCTTACTACAGACTGGCTC 57 176879289 176879541 TTGTCCACATCAGTGATCC 57 NA Rattus norvegicus 81 Dusp26 ENSRNOG00000011518 ENSRNOT00000015725 1 1 1 71 16 64801762 64801780 TTATCCATCGGGCACTGAG 59 64799578 64799596 CAGATCTGCTCACTCCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 2 3 3 81 16 69884410 69884431 CACTTCCTCAGAACTACAAAGG 59 69883494 69884368 CAGGCGAACAATCCTTTGG 60 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803,ENSRNOT00000089065 2 2 2 82 3 64312319 64338474 GCTTTAACTCGGATAGCCAG 59 64312256 64312274 TTTCGTTGCCTCTAGAGCT 59 NA Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 3 1 1 90 3 59837457 59839837 CTTGTAACTGATTGCCAGC 57 59839891 59839909 CCTCTGCTTCTTCCAAGTC 58 NA Rattus norvegicus 81 Chn1 ENSRNOG00000017939 ENSRNOT00000068745 2 1 1 80 3 60535994 60536012 ACTGGTGTGAATACTGTGC 58 60526497 60535952 GAACATTCAACCCACAATCTG 58 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 2 2 2 80 3 151335594 151344765 CAACCATGATGGCAATGAC 57 151344808 151344827 GGGTCATTAGAGTGTTCCAG 58 NA Rattus norvegicus 81 Olr716 ENSRNOG00000046907 ENSRNOT00000074631 2 1 1 80 3 78621123 78621142 CCGATGTACTTCTTCCTTGC 59 78620823 78621083 GTCTACAATCAACTTGGGTGAG 59 NA Rattus norvegicus 81 Csmd1 ENSRNOG00000030719 ENSRNOT00000057897 2 1 1 80 16 78677305 78677325 CTTGGCAGAATTGTTTGATGG 59 78677366 78678586 AGTGTTTCACCTGAATGGGA 59 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962,ENSRNOT00000034141,ENSRNOT00000006634 3 3 3 83 3 51416119 51416137 AACACGGAGGGAAATCGAG 60 51414131 51416074 AGGGCAATCCTATTATCCCAG 59 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 1 1 1 80 3 160608168 160608187 CTCCCTCTACTCACAGTGAC 59 160607965 160608128 TTTGGATAAAGCCTTCTTCCTC 59 NA Rattus norvegicus 81 F7 ENSRNOG00000032737 ENSRNOT00000037806 3 1 1 80 16 81829555 81829650 TGGACTATTTACAGCGATGG 58 81829494 81829512 AGACTTGAGGTGATCCTGG 58 NA Rattus norvegicus 81 LOC100360051 ENSRNOG00000039432 ENSRNOT00000060424 1 1 1 122 15 31709588 31709608 GTGCATAACAATCTGTACTGG 57 31709852 31709870 CTTCACTTGCTCACCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ces2a ENSRNOG00000047669 ENSRNOT00000072935 1 1 1 114 19 37046671 37046691 CATCTTGAAGCCAACTACCTC 59 37046766 37047863 TGAGGTCAAATTTCATGCCC 59 NA Rattus norvegicus 81 AABR07073021.1 ENSRNOG00000056364 ENSRNOT00000082771 2 1 1 81 4 82069789 82076535 CCTTGCCTTCTAAGCTCAG 58 82076580 82076598 ATGGTTAACAGGGATCCCA 58 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461 3 1 2 81 2 150858395 150858414 TTTCCAATACCAACAGGCTC 58 150858457 150864102 CATGCACAATATTGAGCCTG 58 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699 1 1 2 80 2 196494760 196494779 CAGATGCTCCATGTCTTCTG 59 196494820 196495004 TTCATCTTCTACCAGCTTTCC 58 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 3 1 2 80 2 212564685 212564704 ACAGTTTCCATACAAGGAGC 58 212564747 212582941 ACTTTGGGACTTAGCAAGC 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 3 3 5 95 X 22286082 22288504 ATGACCTCCTTGTGGTCAC 59 22288562 22288581 GCATATGCATTTCCACCAGG 60 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847 1 1 2 80 2 56123073 56123091 CATCTCAGCCAACAACAGC 60 56121600 56123029 TGGACCTTCTCATGTCCAG 59 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 1 2 2 80 X 156326538 156327608 TTGAGCAGCATATGAAGAACAG 59 156327647 156327667 GAATACAGCCTTCCATCTCCA 60 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464 2 2 3 108 16 2142311 2158123 ACAGCTTTACAAGAGAAGCT 57 2138559 2138580 CTGATAAGTCAGATTCCTTTGC 57 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 3 2 2 80 5 137259402 137259500 GATAAAGATTGCTCCAGGAGG 58 137259540 137259560 TAGTAGAGGTACATGACGACG 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000014820 2 1 2 164 15 38117329 38117348 AATTGGCGACAAGTCTTTGG 60 38113895 38115016 CCTCTGCAGTTTAGATCTTCTG 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 2 3 3 147 1 170471305 170471466 AACTGAGAAACTTGCGAGAC 59 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 3 3 3 147 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471746 170471764 AGAATGGATGAGCTTCCCA 58 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917 2 1 3 80 2 188399529 188399653 GAAGAAAGGTCTCCTGATAGC 58 188399469 188399487 TGAACCAAGTTCCTAGCAG 57 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000052129 2 1 6 80 1 76721490 76721510 CTCATAACCTCCCATCTTCCC 60 76555696 76721452 TCTGATGAGATAGATCACCTTGG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046 1 1 6 80 1 76530913 76530933 AATCTCATGGAGAAGGAACTG 58 76252518 76392717 GAAGTGATTCTTCCAGTCCC 58 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 2 2 2 80 2 43290923 43290943 AACGCTACGATTACTTTGCTC 59 43290984 43291083 CCATATAGTCCGTAACGCCA 60 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 2 2 2 81 2 30314082 30319940 ATAGACAAAGCCTTCCAGGA 59 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627 3 1 2 80 X 35721928 35771516 ATCTACAGACCCAGATTCCC 58 35771559 35771577 ACTCGACGTTTATGCAACC 59 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770 2 1 2 91 5 136677479 136690057 CAAAGGGATGCTGAATGGTG 60 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000091567 2 1 3 80 15 43022247 43022269 CAGAAGATGGAGTCCAATAAGGA 60 43022309 43025271 GTGCTTGTCCTTCTCTTGC 59 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000031254 3 1 2 110 1 89106778 89106796 GAGAGGCCATGTTCCTGAG 60 89105107 89105204 CAGAAGAAAGAGCAGAATCTGC 60 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728 3 1 2 87 13 26807850 26812098 CACGTAGTGGTCACAGGAG 60 26807781 26807802 CAACCAGAGTTATAAACGCTCC 60 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220 3 1 2 80 11 51054721 51057266 CTCCATTAGGTGAAGATGCT 57 51054660 51054679 CGATGAGACTATGTCTTGCA 58 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000079137 2 1 2 80 6 22263038 22263056 TTTCCAAGTCACAAACGGA 58 22257355 22262994 CTCCACTTTCTGACTGGAG 57 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000022980 3 1 3 80 17 10617659 10618270 GTATGAATCGTTAACGCTGC 58 10617598 10617617 TCCTCCATGACATAGGTGAG 58 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 3 1 2 93 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212087 263212106 ATACTTGACCTGTTGAGCCA 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 3 2 3 80 13 26010248 26010266 CAATTGTGGTGTAAGCGGA 59 26010310 26012969 AGTCTGTAAGTGCCTTGCT 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000008936 1 1 2 90 4 17439854 17593896 GTCTCATAAAGAACTCTTGGAACTG 60 17439788 17439806 CTCATCCAGCAGCATTGTG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849 3 1 2 105 2 196013915 196015825 AAACTACTCCCGTTTCTGTG 58 196015888 196015911 CTACTAACAGTAGTGGATGTAGAG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000070871,ENSRNOT00000072140 1 6 7 80 11 46301817 46301837 GAAACATTGGCTTTACCAGCA 60 46299853 46301776 TTCCGGAGTCACTGTTACTG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000070871,ENSRNOT00000072140 3 6 7 83 11 46301816 46301835 AACATTGGCTTTACCAGCAG 59 46299848 46301770 ACTGTTTCCGGAGTCACTG 60 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 3 2 3 80 5 22747114 22749239 AGGCTAAAGTTAAAGAACCCAC 59 22747055 22747073 TTCCCTCTTCAGTCTTGCT 58 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 3 2 2 80 18 28850548 28856230 CAACTCTCCTGCAAATGTCC 59 28850487 28850505 ATCTGGCATGTACAATCGC 58 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 2 2 2 80 8 94866146 94866167 GCTTAGAAAGGAAGATCAAGCA 59 94864705 94866108 GTGTTTGCTGTATTATCTGCTG 58 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 3 2 2 80 17 9737244 9739460 CGATCCCTCTGTGGTTCTC 60 9739504 9739522 CATTTGTGGTACAGGCGAC 59 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 2 2 2 106 1 243518367 243534146 CAGTGGCAGATGAAGACCT 59 243534216 243534234 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000071919 2 1 3 80 15 39738591 39738612 GTTTGAGAAAGCACAAGATGTC 59 39732057 39738553 GGTGTATGATCTCCATTTGTGG 59 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091 3 1 2 82 8 63414792 63414810 AACGGAATGACTTGAGGCA 60 63414853 63419554 AATTCTTGGTTTCTGAAGGACG 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 2 2 2 80 1 189903060 189903079 AAAGCCATTCTTCTCCAGTG 58 189902860 189903019 GGTAGGATATGTCTGGGTAGG 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000086426 1 1 3 154 8 90958758 90958776 AGTGAAAGACACAGAAGGG 57 90958620 90958643 CTTAATCTTTCTCGGTGTTGTC 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000086426 2 1 3 155 8 90958758 90958777 GAGTGAAAGACACAGAAGGG 58 90958620 90958643 CTTAATCTTTCTCGGTGTTGTC 58 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 3 2 2 80 18 27977856 27978329 AGCTGAAAGTTGTGGAAGAC 59 27978371 27978390 GAGCTCTGTACTGTATCCCT 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 2 2 2 81 17 38998195 38998213 AAAGGCCAAAGCCATTGAG 59 38998256 38999351 GATTGCAGGATTAACCATGGA 59 NA Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 2 1 1 60 4 200782 200800 CATACCTGAAGCTGTGGAG 58 208552 208570 GACAGTGAACACCATCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000065328 1 1 2 80 15 40584594 40584615 TGCTTCAAGCCATTAGTAAAGC 60 40584656 40586956 CCATTGCATTGAGCTTGGG 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000089904 1 1 2 80 9 9143108 9143126 AGGCAGAAGGAAGATGACC 59 9142325 9143065 CTTCCTACCAAATCCAAGCC 59 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218 3 1 2 83 13 88725554 88868191 GAATCCGGTATGAGTTTAAAGCC 60 88725493 88725512 GAATCACTTTGACACCGTCC 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 1 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413154 39413173 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 3 3 3 80 8 109511343 109511362 GAGGGAAGAATGAGCTATGC 58 109502105 109511301 ATACTCAATGCTGGTAGGGT 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 84 20 9749958 9776142 GGAAGAAAGGATACAAGACCCT 60 9776187 9776205 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000079844 1 1 2 117 1 171975720 171975740 GCCTGTTCTATAATGAGCCAG 59 171974221 171975084 GTTTCCTCAAACCCTGTGC 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000078913 1 1 3 87 2 188174021 188174039 GACTTTCGAACTGACCGTG 59 188174892 188180294 CTACAGATTGCACCGTCTC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 1 1 4 80 6 52667519 52668875 GATGTGGAAGCACAGAAGC 59 52668919 52668937 GACAGCAGATTGGTTAGGC 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 1 2 4 80 6 52667460 52667478 AGATGGGATCGATTTCGCT 59 52667522 52671505 AGGAGGGATCTTCTTCCAC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 2 2 4 80 6 52667456 52667476 TAGAAGATGGGATCGATTTCG 58 52667517 52671501 GGGATCTTCTTCCACATCTG 58 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000054944 3 1 2 86 10 109883584 109883602 TCACCAGAGATGGAGTGGA 60 109884232 109888575 GAAGAGGTTTGCCTGAAAGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000068415 1 1 10 98 2 231333162 231333180 CACACCATACATGTGGCTG 59 231329847 231333100 GGGCGGCATAATGTTAGTG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000068415 3 1 10 100 2 231333164 231333182 CTCACACCATACATGTGGC 59 231329847 231333100 GGGCGGCATAATGTTAGTG 59 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000026251 1 1 2 83 1 100404083 100404212 TCACTGGTTTCTCAGACCC 59 100404258 100404277 TCTTAATGGAGGTCTTCCGT 58 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 1 2 2 80 1 143374932 143378415 GGGTAACTGAATCTGTTGTAGG 59 143374873 143374891 CGTAGATCGTGTAGCTGTG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 3 1 1 83 1 67373387 67373405 CTGGGTAAAGGGACCTACG 59 67372312 67372333 CTTATTCACAAATTTCAGGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 2 2 2 80 2 189725105 189725123 CGAAACCTGGCATTGTACG 60 189725164 189725910 GAACAGAAGAACTTGACTGTGG 60 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 1 2 2 90 10 37757310 37764327 CTGTGCTATGGTATACCAGAG 58 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 3 2 2 81 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013122 6013902 TATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000086644 1 1 4 98 10 39220332 39220351 TAAGGATGACTGGAAAGCCC 60 39211328 39220272 CTCCAGTCTCTGTCTGAGAG 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459 1 1 2 80 15 28554769 28554788 AATAAGCGAAAGAAAGCCCA 58 28554829 28556329 GGATCTGGACTCATCATTCTG 58 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144 1 1 2 97 10 39458788 39459333 CTTCTCGAGGAGCGATGAG 60 39461591 39461610 CACCAGCTTCAACATCACTC 59 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144 2 1 2 98 10 39458788 39459333 CTTCTCGAGGAGCGATGAG 60 39461593 39461611 CCACCAGCTTCAACATCAC 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 3 2 2 80 1 144176521 144176539 GGCGTTAGACTATCACAGG 57 144176583 144177623 GATGCAAGAGCTATTCGCA 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 1 2 3 80 10 35361925 35361947 TATGTGGTAACTCGCTACTATCG 60 35361982 35363423 CACTGACCAGATATCAACATTCTC 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000004010 3 1 3 80 10 35361921 35361939 TCCCTATGTGGTAACTCGC 59 35361982 35363000 GACCAGATGTCCACATTCTC 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 2 2 3 80 10 35361918 35361938 GACTCCCTATGTGGTAACTCG 60 35361974 35363416 CAGATATCAACATTCTCCTTGTAGC 60 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 1 3 3 80 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781872 TCTTGAAGAACACGACTCC 57 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460 2 1 2 83 12 2555096 2555114 GAAGCAGGAGAATCGTGAG 58 2553387 2555049 ATCACAATAATGGGCCTGG 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 3 2 2 80 20 5530005 5530023 TTCAGACACTCCCAAAGGA 58 5530067 5530180 CTCCCTGAAATGAAACGGT 58 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242 3 1 2 81 3 51750101 51751031 ATATCAGTCATTCCAGGCCT 58 51751074 51751093 TGAGGATCATGACGTCAGAG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464 2 1 2 82 14 85343700 85343718 TATACCCAGGCTCAGAGCA 60 85343265 85343654 GTCCCTTCTACAGTGGGAG 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108 3 1 2 80 10 56640028 56640048 GATCAAACTCATCAAAGGGCC 60 56640194 56640215 CTGTTATCTCCAGGGATGCT 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 3 2 2 84 14 86379278 86379589 TCTCTAGAAAGGCTAAGAAGGTG 59 86379216 86379234 TTTGCTGTGGGTTTAGGCT 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000017947 3 1 2 90 16 83019512 83019530 GAGGAAGACGCTCAGATCC 60 83010196 83019459 ACTCTTTGCGTGAACTTGAG 59 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000049873 2 1 2 80 13 89589433 89589451 GTTCTGCCTTCAAACACAG 57 89589495 89589604 TACTGGAACCCTACATGGA 57 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373 1 2 3 80 5 142707161 142707182 ATATGGTCGCTACCTTGATCTC 60 142707220 142710279 GTGATGTAATCCAGCTTCTCAG 59 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 2 2 2 175 18 32340785 32340803 TGAGGATTCTTCCCGATGG 59 32351714 32356444 TTCATTTGGTGTCTGCGAG 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927 2 1 2 80 13 99413568 99415188 GTTGTGATTGCTATACGGGTG 60 99413508 99413529 CTGTTATTTCTTGTCTCAGGGC 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000051497 2 1 4 82 10 82095130 82095148 TTCTGAGGGCTTTGGTGAG 60 82095062 82095085 TGATGAAGGAGAGTCCTGGA 60 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054 3 1 2 83 5 33603195 33603213 AAAGCTTGCTGCATTCTGG 59 33603259 33637915 TCTGGTTTCCAGAGTCTCTG 59 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 3 2 2 80 19 23937395 23937792 TTAGCATGTCAACACGCTC 59 23937333 23937351 AAGCATCATACCCAGAAGC 58 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 3 2 2 80 5 24454642 24457631 ATTTACTTTGCCACCAACCAG 60 24454582 24454602 ATTGAAGAAGTCAGAGCACAC 59 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 3 2 2 81 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238663 TATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 2 2 2 80 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093297 AGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 1 4 5 127 4 22380964 22380982 CAACCTGAAGGTGAAGAGC 59 22280193 22380873 GTCCGTCGATACTGACCTC 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000087121 1 1 3 135 10 56716968 56716986 TAACTGGGTGGAGTTTGGT 59 56717084 56717180 GAAGAATTACTGCTCCTCCC 58 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 2 1 1 69 X 48792453 48792471 TTCTACCGACCTGTTGCTG 60 48802126 48802144 GATAAAGGACCAGGCTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000049812 2 1 2 139 1 222734017 222734035 CACTCAGTCTCCGTCAGTC 60 222686578 222733914 AAATCAGATCATGCACCGC 59 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 2 2 2 80 10 29039364 29039705 CAAACACAACTGTTTGCGTG 59 29039748 29039766 CAGCTCGAGTTTGGTAGGA 59 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000059510 2 1 2 80 17 43329423 43329441 TCTCCTTGGACAAAGAGCG 60 43329484 43338399 TTCTCCTTGAGACTTCCTGG 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000004885 1 1 2 80 10 34957454 34957472 CAACAGCAGTATGGCTCTG 59 34956712 34957411 CCAACTCTGACTCTGACCTC 60 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 2 1 1 61 1 89132847 89132866 TTCCTACCCTTAGGAGTGGT 59 89132637 89132655 CTCTGATTGGCTCCGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 3 2 2 80 2 94717206 94720814 CTGGTGGGAAATGAGTCAG 58 94717144 94717164 GCAATAGGAGTTCTCATTTGG 57 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000045628 2 1 2 80 8 111696176 111696199 CATATGAAGAGTACTTAGGAGCAG 58 111694757 111696137 CTTCTAGGAGTCGTGAGGT 58 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000081993 3 1 2 85 17 30705716 30706094 TTAAGAGTGAAGAGAAAGGCAG 58 30705652 30705670 AGAAGAAAGCCGTCTCCTC 59 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999 2 1 2 87 10 38949859 38949877 GAGTTTGCGTCAGTCTCTG 59 38949928 38951878 AGAACGCTTTCTTCTACCG 58 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000088802 1 1 2 117 X 37336868 37337313 TATCGTTGGACCTCACGTG 60 37337393 37338283 TATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 1 2 2 80 4 138701646 138745880 AATGTGGTTGTGAAAGACCC 59 138745922 138745941 AAGAACAATGCTTTCTCCCA 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 1 3 9 99 20 2087658 2087969 TTCTGAGCACTTGAAAGCG 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000043870 3 1 6 81 6 4315010 4315031 GAGGAATATGAGAAAGAGTGCA 58 4312316 4314968 ACAACAGGGCTTTCATTCC 58 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000087894 2 1 4 80 1 267607689 267607708 TACAGCATGAGGTTCTGTCC 60 267607750 267627773 GTTGATGATTTCATGCCGGA 59 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000015963 2 1 2 81 8 64763744 64763763 AAAGACATCAGTAGCCTGGA 59 64763804 64765600 GGACAGGTTTCATTGATCTACG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 3 2 2 81 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410304 219410324 CGATTCTAGAATGTTCCGCTC 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000046456 2 1 2 80 6 137946271 137946289 CCCTGTCATCAACAATGGC 59 137946333 137948806 TTTGCCAGACCATCTACCC 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 2 5 5 132 12 52398218 52398236 GAAGACAAAGTGTGGGACG 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA InUTR Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000045686 3 1 4 88 5 115095226 115184022 CTCAATCCAGCCGTTTGTG 60 115095156 115095174 AGGGCAGTCCAGTTATGAC 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 2 2 2 80 8 112854999 112857439 ATCATGTATTCTGCACACGA 57 112854938 112854956 GTAGGGAGGTAGAAGTCCA 57 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000066430 1 1 2 80 10 15629981 15629999 ACGTAGCAGATACGCTGTC 60 15630041 15637128 AGAATAGCATCCGAGAACCTG 60 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859 3 4 5 80 13 47426325 47429302 AGACAACTATGATAAGGACCTCTC 59 47426268 47426288 TAGTCCTGAACTCTGTTGACC 59 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000092189 2 1 2 96 10 40913738 40953419 TTCTTCAGGTCCTCCTGTG 59 40877914 40877934 GAAGATGTTGACCCTGTAGTC 58 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 3 2 2 87 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494480 42494498 TCTTCGTACATGTGAGGGC 60 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 2 2 2 82 4 182594138 182594159 TGAAAGAGTTAGATGCCTTTCC 59 182592588 182594098 TGCTATTAGAGAAACTGTTCCC 58 NA Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 2 2 2 80 10 831376 833074 TCACTAAAGTAAAGCCGCTG 58 833116 833135 TGATCTTCTGCATCTCCTCC 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 3 2 5 82 1 20903363 20916110 GCTGAGGGAAAGAGTTCAC 58 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 2 2 2 93 2 189583038 189583058 GAGAATCAAACTGCAAGTCTG 58 189584345 189584579 TAGGATAATGCCCATGGCT 58 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 3 2 2 80 X 62840408 62848346 ATTTGAAGGCCCTTTCAAGTG 60 62840348 62840366 GAGTGGTCTTGTAATGGCG 59 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000081934 1 1 2 86 3 111447185 111450088 ACACAAAGGAAAGCTGAAACC 60 111450136 111450154 TTCCTGTGCAGGGTAACTC 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000048418 1 1 2 109 10 90257528 90257546 GAATGCCAAGAAGTCGGAC 59 90256636 90257455 CACGCATAATCTCATCCGG 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 2 2 2 80 10 83290706 83293636 CTGAAATGGTGTTTGCGAG 58 83293680 83293698 GACCAACAACAGGTAGAGC 58 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 3 2 2 85 16 19663400 19667057 AAAGTACAAGGAGGAAGAGTGG 60 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902 2 1 3 80 9 65123351 65123369 GAAATTTGTGCCGATGCAC 59 65123410 65127710 TGTACAGTTTAGTACACATCGG 58 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000071758 1 1 2 80 1 38583544 38583565 GAAACCCTACAAATGTGAAGAG 57 38583401 38583503 CCAGTGTGAATTCTCTGGT 57 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 2 2 3 81 5 57447663 57448321 GTTGACTGCTGAGGAACAG 59 57447600 57447619 GGTAACGATGACCATGACTG 59 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 3 1 1 69 10 90930297 90930315 TAAGGAAGACCAGGGAGTC 58 90930893 90930911 CTGTACGCTGCTATCACCA 60 NA DesignNoJunction Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 2 3 5 69 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762935 120762953 AGTAGTCCGGTATCGTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 3 2 2 107 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199589 220199608 CATGACATCTGGCTTCACTC 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 1 2 2 80 15 46116200 46116219 TCACTCTGTCATCATGTGGG 60 46116261 46121906 GCCTGGACTTTGTCATTGTG 60 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000083425 3 1 2 87 1 44065877 44067245 TCACCAGGAAGTTGATGGA 58 44067293 44067314 AGTTGAGGAGTAGGAATTTCCT 59 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237 3 1 2 81 15 51304028 51304047 TGTTGGAGGCTATTAGTCCT 58 51315374 51315394 CAGTAGATGTTGTCCAACCA 58 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040 2 1 2 80 17 53328454 53389474 CCTGTGTAGTGTGAAGAATCTG 59 53389512 53389533 CTCTGGGAGTTTCTAGATGGAG 60 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000021703 2 1 2 80 17 53563992 53747697 CTCGAATGGTTTAGATTCAGC 57 53747739 53747757 TCTGGTGAAGAAAGCATCC 58 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000038198 2 1 2 80 1 220783722 220783741 AGGAAAGTTTCTTGACTGCC 58 220782905 220783680 CTGTAGTACTCACATGCCTG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372 2 1 4 80 X 53505022 53516730 TTCAAGAGGACACAATGTAGGA 59 53516768 53516789 ATGACTGAAACTAAGGACTCCA 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372,ENSRNOT00000081061 3 2 4 96 X 53462442 53462462 GCATTGAGCATTATGCTAGCA 60 53463555 53466225 TCATCATCTATGCTCTCATTAGGAG 60 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 2 1 3 169 13 50559944 50559962 TGTTTCCAGTGCAATGTGC 60 50559141 50559159 TGTAGCTTCACAGCATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 3 2 2 80 10 82185690 82185873 CCATCTTCCAGGTCATCAC 58 82185628 82185648 TGAAGTTGTAGAAGGAGTGAG 57 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266 2 1 2 82 13 89994541 89995431 ACCGTGTATGAAGAGATTGGA 59 89995475 89995493 TCGAAGTTCTCCAGCTCTC 59 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 1 2 2 80 2 188666798 188666816 TCACCTGGGAACAGTTGTC 60 188666631 188666755 TGGTAGGAAATCTGTGGAGG 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 3 3 3 136 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518939 150518958 CAGTCATAGCTTTCATGCCG 60 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 3 2 2 81 15 37720363 37725217 GAACGTGAAAGGAAAGCCA 59 37725262 37725280 CAAAGGAGGCTTCGATCAC 59 NA Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 1 1 1 113 1 11965244 11965262 GGCGGACTTCTTATTTGGG 59 11968501 11968519 AACCAGACAAATCGCTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000017859 2 1 2 89 9 60921450 60921469 AAGACTACGAGGTGAACTGG 59 60921515 60922004 GATTTATTAACCTCCCTCTGAAACC 60 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000011571 2 1 2 80 15 103213988 103214009 CAACTTGGCTACAATTATGCCA 60 103208377 103208399 GATTCCAATCACTGAGAGGGT 60 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399,ENSRNOT00000014718 2 2 3 80 4 7134340 7134359 ATGCCATCAATGAGTTCGAG 59 7134402 7134963 AAATCTCCTGTGCAACCTG 58 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 2 2 3 80 20 13966651 13966871 TCATTTGCAGGTTTAAGGAGAG 59 13966911 13966930 GCAAGGGTGATATACAGTGC 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 1 2 2 80 3 7124790 7125260 CCATGAAGGACTATCTATATGGGAG 60 7125566 7125584 ACTTGATCTGGGCGATGAC 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 3 1 2 109 15 51454618 51454638 CTCTAGGCTGTGAACAGGAC 60 51454710 51461139 AGTTCTGTCAGGTTCCGTG 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 2 3 3 80 20 2205231 2205627 TATAAGACAGTAAGCGTCACC 57 2205171 2205189 GGTAATGCACTTCCAGTCC 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 114 7 104525176 104527565 ATTAATAACGTCCCGGCAG 58 104525080 104525098 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 2 2 2 115 7 104525176 104527565 ATTAATAACGTCCCGGCAG 58 104525079 104525097 GTTGTTGCGTCACTTAAGG 57 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 114 7 104525511 104527565 ATTAATAACGTCCCGGCAG 58 104525415 104525433 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 1 2 3 104 2 113833145 113833163 CAGGACACAGAGACAGTCC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 2 1 1 67 10 104036719 104036737 AGTTCCAGGAGACTGAGAG 58 104036858 104036876 ATAAGCGAAGTTGGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629 2 1 2 81 20 8304488 8304506 TAAGATGGTGGAACGCCTG 60 8304548 8309450 TAACAGTCTCTTTGCTCTTCGT 60 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508 3 1 3 169 15 51779925 51799357 CTGGATTCCATTTAAGATCGGG 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787 2 1 2 82 4 118217828 118217847 CAGAAGCTCTCATCCTCCAG 60 118217892 118220902 ATTTCCTGCCGTCTGATCC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000022281 2 1 2 81 9 89072891 89072969 GAGCATCCCTCATTTGATAAGG 59 89072831 89072849 CATTGCTAGAGGGATGGCT 59 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 1 2 3 90 1 197549471 197549489 AAACCTTCTACCTCCTGCA 58 197549110 197549417 ACATGAGACCTCTCATCGA 58 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000030760 2 1 2 81 10 39690731 39692200 AATGGTGCAGTCTGTTGTC 58 39692245 39692263 CATGTCGTCTGAGAGGAGG 59 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181 2 1 3 80 X 65293277 65293776 ATCTTAAGGCCCTTACTTCAG 57 65293818 65293836 TCTCAGCATGGATCATGTC 57 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891 1 1 2 164 19 37204579 37204600 GAAATATGCACAACCTACAGCA 59 37206280 37215173 CCACTGAATCTCAAAGATCATCC 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000067162 2 1 3 88 14 86218584 86219916 GGCATTAAGGAATCTTCCGAC 59 86217369 86217387 ACCAAGCTCAGGACATCAG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421 1 2 4 99 10 1312750 1312768 ACGGATTACTGTGCAGACC 60 1309762 1312687 TATCTGAGGCACTTCCTGC 59 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000087045 2 1 2 85 7 67341606 67341624 TCCAAAGTTTCCCATGCTG 58 67341537 67341560 GAATAAGAAGTCTCTTCGGCTC 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321 2 1 2 80 8 49258217 49264836 CTGAAACAGCAGTCTGATGAG 59 49258157 49258175 GTCAAACTCATCCAGGCTC 58 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533 1 1 4 80 3 112256826 112256849 GAGTGACATGTACAAGATCATGAG 59 112256885 112259839 ACCGGAACAATTGTATCAATGG 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 1 1 2 80 1 214193392 214193486 TACAGAGCAGAGAAGCTGAG 59 214193529 214193547 CAGGAGAATGTCAAGCACG 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 2 1 2 80 1 214193393 214193486 ACAGAGCAGAGAAGCTGAG 59 214193530 214193548 GCAGGAGAATGTCAAGCAC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 3 3 4 82 10 67622363 67622381 TGTCTGGAGTATCTGGGCT 60 67622425 67624295 TCTCTTGTTACTGTGATGGCT 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730 2 1 2 80 14 76793199 76796205 TTCAGTAAGGTCCTTGAAGC 58 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730 3 1 2 80 14 76793199 76796206 TTCAGTAAGGTCCTTGAAGCA 59 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 2 1 1 80 3 2443629 2443649 TCTTCAGACCTGATAACTTCG 57 2443049 2443067 CTGCACCTTCTGTGTAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 3 2 2 83 13 47908018 47914853 GAAGGCTAAATATTACCACTGAGC 60 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269 2 1 2 81 7 29562228 29563273 CAAGTCAGTAAAGAAGTCTGC 57 29562167 29562186 ATAGCCTCATGAATGGACAG 57 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 2 2 4 81 7 143124234 143124988 CTGAAGAAGGATGTGGACTG 58 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 2 2 2 80 4 176007114 176007132 ATTGGTGTTGGATGTGCAG 59 176002976 176007073 ATATTCATATTGGCCCATGAGG 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 1 2 3 92 11 71128128 71128146 TCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905 1 1 11 80 6 99151168 99151187 AATCCAGACGCTTCTTTGAC 59 99151228 99151879 CTCTTCCTCTCCAAACTTTGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000047303 3 1 3 80 8 49014495 49014516 TTGAGAGGAGATATCATTCGCT 59 49011754 49014457 GCAGTTTCTCCATCTCTTTGAG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000023542 2 1 2 80 3 3330059 3336028 CTCTTCCCTTTCTCAGGTCC 60 3336069 3336089 TTGATGAAGAACAGCTTGAGG 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 3 3 3 80 20 20582930 20583919 CATCCAAATATAGTCAGCCTGC 59 20583960 20583978 ATCCATGGACAGGAACTCG 59 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000018515 1 1 2 120 14 81819600 81819618 AGGATGGAGCTGAACTCTC 59 81819783 81828335 CTGAGTTTAGCTCGTCGTC 58 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000058000 3 1 5 81 1 79704027 79704045 TTCTACACCCTACGCACTC 59 79702874 79703982 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464 2 1 2 80 9 14499176 14499196 CAATGGGAATGAAGAGTGCTC 59 14498306 14499134 TTGGTTTCCAAGCCATCCT 60 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 3 2 2 80 7 139716026 139716044 ACCTGGAACAGATCAGTGC 60 139716088 139716201 CTGTGTAAGCCTCAAAGCC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 2 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527354 44527374 TCAGAAACATAGATGCCATCC 58 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 3 2 2 80 19 49993214 49994008 AGACCATGGCAGAGATACTG 59 49994050 49994069 TGGAGATGATCTGTAGCTGG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000079417 2 1 3 111 15 61847330 61856478 CGACATCACCCTTACAGGA 59 61856553 61857677 AATTGTGTTTCCCTTCCCG 58 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269 3 1 3 85 15 61847331 61852605 GACATCACCCTTACAGTCGA 59 61852653 61852671 ATATTGAGGAGCGCCTCAG 59 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000071751 3 1 2 111 15 8746094 8746112 ATGAGCAGTCAGTACCACC 59 8746188 8746208 CCAATCACTTCCCTTTGCA 58 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661 3 1 2 81 6 54549981 54550004 AGTTAGAAGCAGTCAGAGATAAGG 60 54550041 54550420 GTGTTAATATCATCACCGGCTG 60 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382 1 2 3 80 7 107514803 107514824 GTTCTCCTGTGATAGTCAAGTC 58 107514864 107516793 CATCATCTGCACAATCTGCT 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 3 2 2 80 9 61023974 61023993 AATATTCGCTTTGCTCGAGG 59 61022376 61023932 ATAAGCCAAAGGAGCTTGTC 58 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491 3 1 2 102 4 117875119 117875138 TCACCTGTAAAGTCCACACC 60 117875203 117881973 TCTTGGCATCCTCTGAAGC 60 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 1 2 2 80 17 54670697 54670718 TTACACCTTTGCATACAGAACC 59 54668773 54670657 TGTGTCACATGTCTTTGCTC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 2 2 4 80 6 99203186 99203205 TGCATCTGGGTATCATTACG 58 99184558 99203143 CTCCTGGATCCTTGAATGC 58 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 1 2 3 82 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069048 ATCTCCGCAATCTCATTCC 57 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000063883 1 1 3 86 11 71035930 71038449 CACAATCAGCACAAAGTATCAC 58 71034138 71034156 CTGAGACCTTCTGGATGGG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494 2 1 2 83 7 31822066 31823608 CGTGGAAGAGTACAGTTGTG 59 31822002 31822021 GTCAGCCCACAACTTAAGAC 59 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845 2 1 2 83 3 177226655 177229045 TATGTCATCCTCAGGCACAC 60 177229091 177229109 CAAGACCAGGGTATCAGCC 60 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000031328 2 1 2 119 3 177226655 177227228 TATGTCATCCTCAGCTGGG 59 177229093 177229111 AGCAAGACCAGGGTATCAG 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 1 2 2 80 1 78105722 78105740 CTGTCCACCAACATTGCAG 60 78104384 78105679 CATCTCCTTCACCTTCCCAG 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000066495 2 1 2 90 2 116065636 116065656 CCATTTCAGACTCTTCCTCCT 59 116065707 116070163 CCTGATAAACCACTGGTGGA 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477 2 1 2 80 2 116053579 116053598 CTGTACAGTCTGACATCCCT 59 116053638 116059664 TTAAATTCTGAACCTGAGCAGC 59 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613 1 1 2 84 13 91852605 91872885 TCTTTCCCAGGACGATAGC 59 91852539 91852557 TTTCACTTGGCACTTGAGC 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078991,ENSRNOT00000012622 2 2 3 80 4 99810292 99810312 GAATCTTTGCTCTGATGCCAG 60 99809463 99810250 CATAAGCTCGGTGCTTCAC 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646 3 1 4 80 12 19763041 19778838 CAGTTTACGGATTACGCCAC 59 19762980 19763002 ATAGGGTTTCTGTTGATCTCCTC 60 NA Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 3 2 2 103 8 111213731 111213749 TACCCACACGCTGTAATGG 60 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000025680 1 1 2 80 1 212715879 212804570 TTGTATGCACAGGTCACGT 60 212804614 212804632 GTCCTCGAAGAACCTCCAG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 2 5 5 84 1 257590076 257746041 CATCTTTCAGAAGGGTGGC 59 257746089 257746107 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000014979 2 1 2 80 1 251203321 251203340 CTCAAAGGCTTTATGAGGGA 57 251203382 251213379 CATGTTGATGACTCCATCGT 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000010910 2 1 2 82 13 113915557 113927697 GGAGTTCTTGAGCTTTCTTGTG 60 113915496 113915514 CCAGGAAGTACGGGAAGAG 59 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 2 2 2 80 10 11886381 11886402 TACACAAGTTGCATACATCCTC 59 11885670 11886346 CTTTCTAATAAGAGGGAACCTATGC 59 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 1 2 2 80 7 143387077 143388134 CTGAAGAAGGATGTGGATGC 59 143387016 143387037 TTTGATGTCATCTGTCATGGAG 59 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000086504 2 1 2 95 7 143382701 143382722 AAAGCCTCCAGACAGACAG 59 143382624 143382642 CTTCCTGACTTGGGAAGGG 60 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690 2 1 2 81 10 65673458 65675863 CCTCTGAGGTCTGCATAGAG 59 65673396 65673414 TGTTCTACAGCAATGGCCA 60 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 2 2 2 80 X 118449307 118450626 GAAGATGATATTTCTTGGGAGTCTG 60 118449251 118449272 CAGGTCTTCACTTTCATTTGCT 60 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439 1 1 3 84 11 70401431 70401449 CAACATGGGAGGAGACCTG 60 70399521 70401386 GTAGAGAAACCACGAGATACCA 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439 2 1 3 84 11 70401433 70401451 TTCAACATGGGAGGAGACC 59 70399523 70401386 AGAGAAACCACGAGATACCA 58 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883 1 1 2 84 20 32087043 32090263 AGCAGCAGGAGATTATCCT 58 32086977 32086995 GGAGATTCAAATCGCTGGT 58 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 3 2 2 80 7 143402864 143404909 CCAGACCAAGTTCCAAGAG 58 143402802 143402820 TCAGAGATCTCGTTCCTGG 58 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000075846,ENSRNOT00000002030 1 2 3 80 12 25514972 25516908 GTGACAGTCCCAGATAATGAG 58 25514912 25514931 GAGGTCGTTCACTTGTTCTC 59 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 1 2 2 80 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505868 80505887 GGATGTGGTCTAGATGTGCA 60 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015 3 1 3 80 1 148928187 149079749 TCCTAGGATTCTCCATTGCC 59 148928126 148928145 TGGCTTCATTGAATGTGTCG 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 110 17 5436598 5436617 GTGAAGTCGTGAACTTACCA 58 5429959 5432556 CGAGGAAAGTAGTTTGTAACAG 57 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000088243 3 1 2 95 1 266117046 266117067 ACTTCAACAGTAACTTCTTCCC 58 266117123 266119105 CATAGGAGATGCCCAACAG 58 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000082205 3 1 2 81 8 49698668 49698688 GCAGTTTCAATCAGAAACCCA 60 49699379 49702193 CTTCTGGAGGCATTTGTGG 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083 2 2 4 80 1 189393395 189393416 CAGCTTATCAAAGAGCTACAGG 59 189393457 189394993 TGAAACAAACTCCACCTTCC 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 3 1 3 84 14 85967805 85968312 GGTCAAAGGGCATTCAGAC 59 85965411 85967758 CAAATCTGCAATTGCCACAG 59 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 2 2 2 80 5 151185783 151185801 GACTATGAGGCCAGGACAG 59 151185842 151187065 GTCATACTCCGTATTGTTCAGG 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000092002 2 1 2 82 15 4883229 4883968 GCAGCAGGATGAAACAGAG 59 4884009 4884032 CTCTGTCTTCAATCTTGTAGTGTC 59 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 3 2 2 81 3 113269952 113270155 GGAGAACCTTCAGGTGACTC 60 113270199 113270217 CTGCTGTTCATGTGTCTGC 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 3 2 2 84 10 67476597 67477098 CTGGAAGAGATTTCTTCAGTCG 59 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000011432 2 1 3 80 4 23115820 23115838 TTGGGAATCACTTCCTTGC 58 23114476 23115777 ATAACCCAGTTTGGACTGGA 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 1 2 2 80 15 12885956 12885974 ATCAAAGCACAGAAAGGGC 59 12876883 12885913 CATCTATGTCCTGCAAGAGC 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 3 2 3 80 15 60750288 60750306 GAGCTGTGCAGTGTATCAG 58 60748352 60750246 AAAGCCCAGAAATGTGATCTC 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236 1 1 2 80 17 68487219 68487238 CCCAGATTCACTAGCTACAG 57 68487280 68488845 AAGGTGTTGGTGATATCTGG 57 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103 1 1 2 154 18 63357121 63357139 GAGCTTGGAAGAGATCCTG 57 63294480 63357003 ATTCGATAACGCGGATCTG 58 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000091052 3 1 2 81 10 46155481 46155499 ACCAACCAGAACCTGTCTG 60 46154815 46155438 ATGTCAGCAAACTCTTCATCC 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000085929 3 1 2 80 5 163214865 163214889 CTGACTACTACAAACGAAGACAG 59 163212955 163212973 AGAACATGGAGCCTTCTCC 59 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 3 2 2 80 5 160017220 160017474 GAGGATGACAGTGGAAACAG 58 160017159 160017177 GTCTGGCTTACGACATCCT 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 80 4 14166253 14166274 ATCCATTCTTGAGTTTGGTTCC 59 14166309 14169640 CTCCATCTACAGTGTTATTGTAAGG 59 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262 3 1 2 83 10 66802710 66812216 TTGTACCAGGTGGTTAGCC 59 66812263 66812281 AGGGTTGATGAACCTCAGG 59 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 3 2 2 68 15 19727789 19727807 TTGACAGAGACTGGTGTCG 59 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 2 2 2 80 11 72314288 72314306 GGAGAAGAGCCTGTCAGAG 59 72274511 72314244 GCTTCTGTGGGCTTTATGG 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 1 2 2 80 14 14986672 14987806 TGTTTACAGGGAATGCATCAG 59 14986612 14986633 TCTTAACTAGATCTGCTCCTCC 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000002834 1 1 2 81 14 14951693 14953678 GAATCTGGGTCCATTTGTGC 60 14951631 14951649 GGGTAAGAGCGAGTCAGTC 60 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 2 2 2 80 1 178139641 178145861 TAGATTGGGAATAGAAGGCTACC 59 178139583 178139603 TTGTAAATGACTTCTGGACGG 58 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 3 2 2 80 1 178139641 178145860 AGATTGGGAATAGAAGGCTACC 60 178139582 178139603 GTTGTAAATGACTTCTGGACGG 60 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 1 2 3 82 12 17753014 17753032 GTTAGAGGAGCACCTGGAG 59 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 3 2 3 81 3 113420080 113420205 CCAGAGACAATAATCTTTCAAGGAC 60 113420023 113420042 CATCCGGTATTTGTGGTTCC 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 3 3 3 80 3 2515012 2519288 GACTAAAGATAGTGACAATCCACC 59 2514955 2514973 ACTCCTCTTTGCATGTCCC 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 2 2 4 82 17 72247454 72356850 CTCAAGAAGAGGAGGAAGAGG 59 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000046288 2 1 2 85 X 105188512 105188661 TTGTACAGAAGGCAAAGTCAG 59 105188708 105188726 GCAATGAACCAGAGCTGTC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000044956 2 1 2 81 8 111840531 111840552 ACCACCAGAAATATACAGTGAC 58 111840131 111840489 TAAGTACCTGTTCCGGCTC 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 1 2 4 82 20 3113956 3113974 CTACTTAGAGGGCCCATGC 60 3114019 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 3 2 2 68 12 2580353 2580372 TTCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 3 2 2 80 9 81852156 81854181 TGTTGCTTCATACTGGAGAG 57 81852095 81852114 GCTTGGATAGGTAGCTAACG 58 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 3 2 2 80 X 124412946 124412965 AAGTGGCATCGTACAATACC 58 124403023 124412903 CTCCGGAATGCTGAAAGTC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 2 2 3 80 4 33640464 33640482 CTTCTTCAGAGAATCGCCC 58 33640525 33640982 AATTGAGGAATCAGCATCCC 58 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 3 2 2 82 2 235852556 235852652 AACTAGGCTGTCTCGAACC 59 235852492 235852510 CACATGCGGATTTAGGTGC 60 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000087632 2 1 2 100 7 142146930 142147304 GTACTTTCTTTGTGTACCATGC 58 142146851 142146872 GATCTGCTGAGGAGAAATACTG 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000080753 3 1 2 114 14 91845578 91850871 AGTCATACTGGTGAACGGC 60 91850949 91850967 GGCATTTGAAGGGCTTCTC 59 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000015322 2 1 2 80 4 9997025 9997043 TCACATTGACGTTCAAGCC 59 9997083 10002126 GGCTCTAAGTAATGCTCATTAGC 60 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 1 2 2 80 12 16918363 16918487 GGCAAACCTATCAGGTCCA 59 16918528 16918549 GAAGCGTAAGAAAGTGATGGAG 60 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972 1 1 4 85 6 109673454 109673968 GCGATAGTATTCATCACTACAGC 59 109674112 109674130 GTATGTGAGCTCCACAGCA 60 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174 1 1 2 80 3 60748461 60748480 AACAAGCAGTACCTTCACCA 60 60747731 60748419 CTGGTACAGGAACAATTGGC 59 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 3 2 2 87 9 17227410 17227430 CCTTCACACGAGTATGAACAC 59 17227479 17231875 CCTTGATTTGGACCACCAC 59 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 3 2 2 80 1 189176354 189176856 CAATGTTTCTGACCCTCAGAG 59 189176294 189176313 AAACACTTGTCCAGCTTCAC 59 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 3 2 2 80 9 67699613 67702707 CTTCTCTGAAGCCATACAAGTG 59 67702747 67702766 TATTCACATGGAAAGCTGGC 59 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000083743 2 1 2 86 3 82614559 82637788 GTTTGGTTATGAGGTCTGGC 59 82614492 82614510 TTGTTCATCTCGTGGTCCC 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 3 2 2 80 8 52808666 52808687 GATTATCAAACAGCCGGATGAG 60 52807983 52808626 TTGGTAAGACCAGACTTCCC 59 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265 2 1 2 114 8 52803018 52803036 GCGAAAGCATCAAAGAGCT 59 52802792 52802941 TGCAAAGTTAAGGGCTTCTC 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 3 1 2 86 6 111286933 111286951 GCCTAAGGGAGAGTACAGG 59 111283007 111284760 AAGATCAGAACCTTGCCCT 59 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 2 2 2 80 1 31723807 31723827 TCTAGATGCCATTGCTAAGGA 59 31723868 31725710 AGCTCATTCAGATGTTGCTC 58 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 3 2 2 80 19 39386430 39389317 AATTCATGCCAAAGTTCCTGG 60 39389357 39389377 GAAGTGACGATACAGGAAACC 59 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801 3 1 2 81 8 115589684 115589703 TGTGCAGGCTTTATGAAGTG 59 115589746 115609076 TCCTGTTCTTCCTCTTCCTG 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 80 8 72615740 72615763 AGAAGAATAAGTGGTACATCCTCC 60 72608739 72615705 AGTGAGGACTTAGTAAAGTCTGG 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000077941 3 1 2 87 2 179591452 179591471 CTTGTGACACCATGAAAGTG 57 179590536 179591403 ACCGCATTTCTTAATGAGGA 57 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 3 2 2 119 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410035 266410053 TTGATTTCATGTTGCCGCT 59 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000077790 2 1 4 80 2 57868680 57876550 GGATTTAATCAGGTATGCACCTC 59 57868622 57868644 ATCACACCCATATCTTCCATCTC 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000085599 2 1 4 80 2 57863102 57867742 TATAACAATAAGGGACCGCC 57 57863041 57863060 GACAAGTGTTCAACAATCCC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000031946 3 1 3 80 7 27289977 27289997 AAGTCTCCAAGTACGTGATGG 60 27290037 27292011 CAGAAGCCAACATGAGAACAC 60 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000035317 1 1 2 82 18 73564369 73564387 TTCATCTTCATCTGCGCCT 60 73564430 73603595 TCGAAGTACCTCTTGATGTAGC 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 1 2 2 80 7 123047238 123052959 GTCCAGCACAGAATCATCC 58 123053003 123053021 TTCACATCAACCTCCACAC 58 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000028570 2 1 2 80 1 101724668 101741339 CCGAACTTAGCCAGAAGCT 60 101724606 101724625 TCTCTGGTGTATACATGCCG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 1 4 8 86 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217603 8223846 TTATCCAAACTCCTGGGCT 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283 2 2 3 89 1 215273115 215273134 GAATTGACAAGGACAAGGTG 57 215272623 215273066 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000088558 2 1 2 80 1 7367973 7371208 CTGGGCCAGATTAGTTTCAG 58 7364107 7364125 TGAACTTCCATTTCCGTGC 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 2 2 2 80 X 123496139 123496159 TACTTCAGAACCGTTGGAGTC 60 123496195 123496536 GATTAGGTTCATCCAATAGAGACTG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000025415 3 1 4 81 1 154425445 154425464 GCCAACCTTTCATCCATCTG 59 154425507 154439761 CGGAGAAGGACTGAATCCTC 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 1 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837427 3837448 TCTTCCCTATGTTCTCTACAGG 59 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031622 3 1 2 88 3 3837891 3837909 GTCAAATGTCAGCCTTGGC 60 3837960 3838059 GAAATCCTCCTCAGGAAGGAG 60 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404 1 2 4 80 2 92572413 92572434 AACTGTTTGGAAGAGAACTCAG 59 92572472 92572900 TTAGTAGGTACAGCATGTCCAG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404 3 2 4 85 2 92566976 92569996 CAAGACTACTCCAAGGGCA 59 92570042 92570063 ATTTCTTAAGTCCCGTGAACTG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912 1 1 4 86 2 92557891 92557909 TTCAGGTCAGACAACACTG 57 92557959 92560993 TTCCATGGAACGAAAGGTG 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912 2 1 4 87 2 92557890 92557909 ATTCAGGTCAGACAACACTG 58 92557959 92560993 TTCCATGGAACGAAAGGTG 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279 3 1 2 85 4 99504710 99504730 CAACCACGAAGATAAACTGCA 59 99503778 99503797 CTGGATTCACGGCTTTCAG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000083079 2 1 7 81 1 102929716 102929735 ACTCTGAAGTCACTGAACCC 59 102929779 102930386 CTCATAGCCACTGCTTGTG 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857 1 2 3 80 19 52681774 52681792 GATGTCACCAGGAATGGGA 59 52681835 52682695 CGGCTTGTATTTACTCAGGG 59 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 2 2 2 92 1 80307607 80307950 AGATCCGTGAGAAGGTCCT 60 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000014023 1 1 2 81 4 7707630 7707651 TCCAGAATATCAAGGAATGCAG 58 7707688 7722193 CTGTTAACTCTGTATCTCCATGTC 59 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 1 2 2 80 3 11790208 11791182 GATGGCCCAGATTTCAAGG 59 11791225 11791244 TTCTCATACAGAATGGCACC 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 2 2 4 80 7 142036961 142036979 TTTGCCCTCATCCCTATCC 59 142035034 142036917 GATCCTCCAGCCTATTCCG 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000020705 1 1 3 80 9 90891937 90907023 GTCAGAAACGATTCCATGTATGG 60 90907061 90907081 ATCTACCACAGACATGTCCTC 59 NA Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 2 2 2 80 6 26261342 26262443 AGTACGAAAGGGAATATCGTC 57 26259813 26259832 GCTCCTTCTGCTCATTACTC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 3 5 5 80 8 73060927 73060946 CCATTATGTTTGCAACAGCT 57 73058136 73060885 TCTTCAGAATGTTCTCCCTG 57 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 1 2 2 80 3 101908250 101910819 GAAACGAACCAGTTCTGCG 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000080567 3 1 2 91 12 12649924 12649942 CAGACACATCGAACCTGAG 58 12652549 12652800 AATGAGGTAAACTTCCGTAGTG 58 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365 1 1 2 80 12 12652932 12658160 TGTTTATAAGGCCATGAGCG 59 12658968 12658987 AATCTTCGGCAGAAATCCAG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 3 2 2 98 3 79258840 79259951 AATCCAAGTTAATCCGAGTGG 58 79257514 79258783 GCTTCAGATCCTCATATTCCTC 58 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 3 2 2 80 2 104057848 104057868 AATCCTTACCACAATGCAGTC 59 104053535 104057806 ATTGGCAAGCTTAGGTTCC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000084595 3 1 3 80 14 114540285 114540305 GAGCACAGATGAGGGACAG 60 114540223 114540242 GCTTCCTTTCATTCAAGGGC 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000017550 3 1 2 81 X 122945068 122945092 GAGAATTTCTCTACTGTGTATCCCT 60 122945130 122951528 GGAAGCTCTGAATTCTCCCT 59 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266 3 1 2 81 X 122945066 122945090 CAGAGAATTTCTCTACTGTGTATCC 59 122945126 122949397 GAAACTAAAGAGAAGCCTTTGC 58 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000040559 3 1 3 93 1 3879193 3890876 CGACTTCCGCAAAGATGTC 59 3872197 3872215 CTCCGAGATCTGCTGAAGG 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000024793 3 1 5 80 19 43257987 43258891 AGAGGAAGAAGAGAAAGAGGAC 59 43258929 43258950 TTGGTGTTATCCACAAGATTGC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 80 19 43234683 43234701 AAGTGATTGAGCAGATGGG 58 43234742 43237115 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 2 2 2 181 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885043 171885061 AAAGCTGAAATGCCGAGTG 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135 2 1 2 99 5 145139849 145148308 GATGCTCATGAATATGGACCTC 59 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 3 2 2 80 15 28706867 28707117 GAGTGTCAGGCTACTGTGG 60 28707161 28707179 AGTAGTCACAGGAGGTGGT 60 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382 1 2 3 80 5 159095261 159095284 CTGGAGGAAGATGTGATTTATGAC 59 159095004 159095224 GGTTAATGTCATCGCCATACC 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312 2 1 2 81 1 56973184 56975910 AGCAGATATTAAAGGCCAGTC 58 56973123 56973141 CGATCTGCCAATTCAAGTG 57 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 3 3 3 92 13 83073935 83085477 ATGGAATGGTACCAGAAGTG 57 83085532 83085550 AAATTGCCACTCTCGATCC 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442 2 1 2 88 6 49844195 49844450 CAGATAACTGGGCCATTGAC 59 49844126 49844145 ATTTCTTAGGCAGCTGACAG 58 NA Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 3 2 2 80 1 214011977 214012286 GTTACGCTTGTACTTCATCCT 58 214012326 214012346 TGATAGTAGACATAGGCCAGG 58 NA Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 3 2 2 80 10 110159060 110161379 ATGCTCAAATTTGGTGCCAG 60 110158999 110159021 GGAGTGTCTTAATCGTTCTTCTC 59 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721 1 1 2 97 19 43163612 43163630 TCTCTTGCTTCTGCTCCTG 59 43163688 43164044 AGATGATATCTTGCACAATGGG 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 2 2 3 147 9 12477292 12581721 ACAGTTCCTACCGCATCAG 60 12581832 12581850 CAGAACCTCTTTGCCTCCA 60 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 3 2 2 80 2 195751946 195751966 CATTAAAGCGGAGGAGAAGTC 59 195744622 195751908 CTTAGCATGTTGAGGTACATGAC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000024872 1 1 2 80 17 77605083 77607625 GATGTGGCTACAAGGTACAG 58 77607666 77607686 CTAGTTCAAGTTCCAGCACTG 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102 1 1 2 84 5 27313144 27313162 AAACACTTGGAGAGCACTG 58 27313209 27386166 CTTCTCGGTACGATCTTGAC 58 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000066191 2 1 2 153 5 27327119 27386168 CTGATCGTACCGAGAAGCA 59 27386284 27388319 GTGCCATTCGTTAATGTCGT 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000004753 2 1 2 95 10 46579431 46582804 ATTTGAAGACATGCTTCAGCTC 60 46579357 46579375 CCTGTGTCTCCTGTCTCAC 59 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 2 2 2 80 5 147825161 147825180 CGTCTATGAGATGGAGGGAG 59 147824993 147825119 CATTCTTTCCCAAAGGCCTG 60 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000050764 1 1 2 80 2 127723188 127754511 CCGGAAGCAGATTGATCAG 58 127723126 127723144 GCTACCATTTGGCCAAGAC 59 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820 1 1 2 81 19 55510342 55510360 CATCTACCACCCTGGAGAG 59 55461117 55510297 TTCTCCTTCCTGTGAGCTG 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 2 2 2 108 20 45189546 45189564 AACTTTGCCCTCTTCAAGG 58 45157496 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 2 2 2 80 3 13247869 13270128 ATCACAGTATCACAGGTATCCA 59 13247810 13247829 CTCCTCTTGAAATTTGCCGA 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 3 2 2 81 3 13247869 13270127 TCACAGTATCACAGGTATCCA 58 13247808 13247826 GCCTCCTCTTGAAATTTGC 57 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 3 2 5 98 18 79413330 79424849 CCACATGTACAAGGACTCAC 58 79424910 79424928 AAGAAGTGGACTACTGGGT 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000078589 3 1 5 80 1 15815315 15815333 GAGCGGTTCACTTCATACC 58 15815375 15816593 GTCAATCCTCCTGTGTATCTC 58 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000038780 2 1 4 80 7 28468812 28468831 CTGAAGCCTACAAAGTCAGC 59 28468871 28485476 CAAGTGTACTTCCTTCTGAGTC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 3 3 4 84 7 28468857 28468875 ACTGACATGCCCAAGACTC 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 2 2 2 90 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425222 159425241 TCATACCTAAGCACCGACTG 59 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000043199 1 1 2 80 4 99769249 99769268 TGAGGACACTATAAACACCG 57 99769311 99773154 AAACTCTTGGCTAGAGCTG 57 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 1 2 2 80 4 34602699 34610181 ATGATCGTGATAAAGACAGTGG 58 34610221 34610240 ACATGTAGCTGTTGTTTGGT 58 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 2 2 2 81 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409728 78409746 GCATCCTCTTCCTCCACTC 60 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705 2 1 2 81 15 107971212 107972625 TTCGGACAGGGATTCTTCG 60 107971149 107971167 AAATCTCTGACAGAGGCGT 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 1 2 3 81 1 37957326 37957344 CCCTGCTCAATGGAATCTG 58 37956098 37957283 CTTAGAGAAAGCAAGACCCAG 59 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 3 2 2 81 7 71136414 71138334 GAGTTGGGAACAGAGGACTC 60 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000043799 3 1 2 106 5 140825817 140825836 TGACTTCACAAACCACAACG 59 140825412 140825748 AGTCAGAGCATGCATCTGG 60 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 2 2 3 69 13 82562071 82562089 CATCTACAATGGCGGTGTG 59 82563169 82563188 ATAACCAACCGCAAACACAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060253 2 1 10 80 15 32828473 32852780 TGACCGTTCTACCTGATGTC 59 32852820 32852841 AGAGGGTGATGTTATCAGACTG 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568 1 1 2 107 3 119384579 119384597 ATCATGGTGGAACTTGCTG 58 119383813 119384331 TACTGGCAATTTCTCATGGG 58 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568 2 1 2 108 3 119384579 119384597 ATCATGGTGGAACTTGCTG 58 119383812 119384331 CTACTGGCAATTTCTCATGGG 59 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000084985 3 1 2 141 1 79954827 79957197 CATCAAAGCCACCAACCTG 59 79957302 79957320 GTACATGGTCAGGGACTGG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848 2 1 2 81 1 140811740 140818274 CGCTGCAGACATTGATGAG 59 140818318 140818337 GCATGTGAAAGTGTCCAAGG 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000091945 3 1 6 177 20 3437182 3437579 CTGCATTCAACAAATCCAAAGG 59 3436894 3437048 CCTTATAGATCTCCTCCACAGTC 59 NA InUTR Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000091221 2 1 2 80 2 114423537 114423582 CAGAGACCAAGATCACCGG 60 114423624 114423644 CGATGTCATATCCGAACTGGA 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000091221 3 1 2 83 2 114423534 114423579 TGGCAGAGACCAAGATCAC 59 114423624 114423644 CGATGTCATATCCGAACTGGA 60 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769 3 1 2 88 19 118936 118955 TTGGTTGAATTGAACCTGGA 58 118223 118690 CTTGAAGTTTCTGATACTTGCC 58 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796 1 1 2 80 1 241021915 241021935 CTTGTGGCTGAGAAATAACAG 57 241010359 241021874 TTCTTATTGTCACGAACCGT 58 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000037115 1 1 3 80 2 174342086 174347592 CAGCTTCAAGATGTCAAGACTC 59 174342027 174342048 ATTTCGAAAGCTTGGAATCCTG 60 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011 3 1 2 88 7 53648480 53649031 CTACTGTAAAGGGTGCTACG 58 53649081 53649100 ACTACTGAGCATGAACAAGG 58 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000076578 1 1 2 89 13 82743493 82745706 AGCACAATTGGATTGACACAG 60 82743424 82743442 CACATAGGCCTCGTAGCTC 60 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 1 2 2 80 6 125877504 125877523 GCCATCTATGCAACAATTCC 58 125877564 125877662 TTCTGTATTGTGTCGAGACTG 58 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 2 2 2 80 6 125877550 125877649 TGTACGATCTTTATCAGTCTCG 58 125877690 125877708 TATCAAAGGCTGCATCCAC 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 3 3 3 181 14 28430100 28448338 AAGTCATGGGTTATAGGTGC 57 28422441 28429957 TCTTTCCGTACCTTCTTCTG 57 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443 1 1 2 84 10 34954489 34954509 AGCTGGATGACATTCTAACAG 58 34955438 34957621 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000078495 3 1 3 81 4 158244429 158244448 AGCAGCGAGATGAATTTGAG 59 158244490 158334050 GCTTTGATCTCGTACATCTCC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 2 3 3 80 7 28728085 28728105 ATTTGGTGTTTCATCCCAGAG 59 28728146 28737444 CTTCCAAGCTCCAAATCCTG 59 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 2 2 2 80 7 120214409 120214721 CTTCCAGATCCATACCAAGGA 59 120214763 120214781 AGAGCCTCAATCCAGTTCC 59 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 3 1 1 158 6 26602156 26602177 CTGGATAGACACTCCGATAACC 60 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 1 2 3 80 6 129643811 129646853 CACAGACACAGTTTATAGGCA 58 129646895 129646913 CTCTTCACATGCATTGCTG 57 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 3 2 3 80 X 77137647 77137666 ACTAACCTCTCCAGAACCCT 60 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 3 2 2 82 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797741 11797760 GTCCATCTCATCGAAGAGGA 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694 2 1 2 80 3 11797853 11798609 CTTTATCAGCAATACTGGAGGTG 59 11798648 11798667 ATTTCTTCCCTGTCCCTACG 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 3 2 2 80 8 112661828 112670852 GAAGCTCTATGAGCATGAAGTC 59 112670892 112670911 AAGGTCAGTAAGCGGATCTC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000088679 2 1 5 84 9 81657358 81657376 CTCATGAGCATCGCTTTCC 59 81657422 81657690 CCCAGAGCAGTTTGAATTCAG 60 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000090922 3 1 2 80 X 118200496 118200516 CTTAATGTCCCTAGCCATTGC 59 118265396 118289352 ACATAATCTCCCAGAATTGCTC 58 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000087636 2 2 3 80 2 62208374 62208503 TTATTCTCAAAGGCAGCCC 58 62208547 62208565 GTTGGTCAGTCATTGTTGC 58 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083 3 1 4 81 2 208569517 208569535 AATCAACAGGGAGAAGGCA 59 208567485 208569474 CAGGGCAATGTTATTCCTCTG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 3 2 3 82 14 25791723 25791741 AGCTTCCACCTCTTGTGTC 60 25791787 25859216 GAGAAGGAGTTGTGCATGC 59 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 1 2 2 80 5 167297623 167298213 CAAGGACTACCCAGTGGTG 60 167298256 167298275 GCAGTAGCTGTGAACTTCTG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 2 2 3 80 11 80933954 80967275 CCTAATGAACTCTCAGTTAGTCAC 59 80933897 80933920 CATACAATTAGGATTCCTTCGGTG 60 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773 2 1 2 115 3 2452787 2453038 AGAAATGCAGCCCTACCTG 60 2452690 2452711 AGTTGGTCAGTATTCTTCAGCT 60 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515 2 1 2 83 19 42163246 42175295 CCAACCACAACAAGAAGCA 59 42163181 42163202 TGAGGTGATACTGCTTATTGGA 59 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604 3 1 2 98 6 123211231 123290821 TTCTGCAAGTTTCTCCAGGA 59 123211152 123211170 TCCCAATGGGAGTGATTGG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 3 1 1 70 8 37704183 37704202 CTGCAATATGGTACATCGCT 58 37702372 37702393 GTGTCAAGACTCAATAAAGAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000082412 1 1 2 80 1 264723509 264723530 TACCTGACCTACATTCTTCTCC 59 264723571 264724740 GAAGTGTTTCCGTTGTCCA 58 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 1 2 2 80 2 189400871 189400889 GGCGTCAAGTAGTAACTGG 58 189400931 189401324 AACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428 2 1 2 80 16 20883160 20883178 AGAAAGAAGCAACCAGCCA 60 20883009 20883119 TCTTCAAAGTCTGGATCTCCTG 60 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000080114 1 2 3 104 14 22122626 22124644 ATGAGGAAGGGCATTTCAG 58 22124711 22124730 CTTGAGTGTTGACTCTTCCA 58 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000060179 3 1 3 90 14 22122668 22122688 TTCTGGTCACATTACAGAAGG 58 22122750 22124753 ACTCCCTAGATCTCTGATCTC 57 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 1 2 3 99 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865901 120867399 GATATGTCCGATAAACAGCGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070 2 1 3 99 10 86383149 86383646 AGAGGATTGTGGTCTCGAG 59 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826 3 1 2 80 6 128656412 128657957 ACAGCCACCAGGAAATCTC 60 128653898 128653916 GAGGATCTGTCCTTCTGGG 59 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860 3 1 2 80 19 57106243 57106520 CTATGGAAATATTCAGAGCAGACTG 60 57106556 57106576 TAGACGTTGTCTAGGTACCAC 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208423971 208426476 ATTCATACCGAGCTCATGC 58 208426518 208426538 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054 2 1 2 90 15 29209018 29209036 AGTGCAAGAGTCAGACTCG 60 29209084 29209264 GATCGTTTCTCTAATGATTTCTCCC 60 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 2 1 1 60 7 75286746 75286765 CTCGAAATTGGAGACCATGC 59 75281146 75281165 CAGTGAATGGCTTTCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000079539 2 1 2 81 19 43838821 43839356 GGAAGTAAGGCCTATTCCAC 58 43838759 43838777 TAAGCTCCTCCTTGGTCTC 58 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 1 2 2 80 16 24586316 24588409 ACTCAAACAGGACAGAGGA 58 24584351 24584370 TCATCACTGAAATCCAAGGC 58 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 3 3 3 106 18 72576120 72593018 GCACTTGCTCTGAAATTTGG 58 72593087 72594076 ACGACCATCAAGAGACCTG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 2 4 8 85 6 128078984 128079005 GCATCAAAGAAGTCTTCTCCAC 60 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000085403 2 1 2 84 8 79685397 79685416 CGAAGATGAGCTGAACAGTG 59 79685459 79687520 TGACTGGGTCTTGAAATCTAGAG 60 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 2 2 2 84 2 208398702 208398720 CTCCTCATCAAGAGCTGCA 60 208398123 208398406 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 3 2 2 84 2 208398701 208398719 TCCTCATCAAGAGCTGCAG 60 208398122 208398406 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473 1 1 2 80 4 152214572 152233312 ATGCTGAGAAACAGGTGGA 59 152214510 152214529 ACAGCTTAGCTTTCATGGAC 58 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000007710 3 1 2 83 5 86406717 86406735 TTCAGTCCCTCCAAATGGA 58 86403567 86406673 GACATTTGTTGACATCTTGCTG 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 3 2 2 80 4 85127670 85129420 CTGAAGCATTTATGGCTAATCC 58 85127611 85127629 GGTATTCTTCTGCAGTGCC 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 1 3 9 80 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545746 CGTGTATGAATATAGGCCTTAGAG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000003021 3 1 3 82 14 34561654 34562177 TTCTCGGATACAAGCAGGC 60 34561590 34561610 AGAGTCTCCGAAGACTATGGA 60 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214 2 1 2 80 2 189871159 189871177 AGACCTCCTTCAGTGAAGC 59 189871219 189871950 GGACTTCTTCAATTTGCTGCT 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052 3 1 2 138 10 109964975 109964993 GGAGAACTTGCAGAAGCTG 59 109943871 109964574 TTCAAATAATCGTGTAGGGTCC 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 3 2 2 80 1 218734759 218734778 GCTTGCTCCAAACCAATACC 60 218733325 218734719 AGAACATGTCCAATATAACGCC 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000078148 1 1 2 85 2 116402788 116402811 CCATACATATGTGGTATTTGTGGG 60 116401759 116402744 GGTCGTTCTCCTGTATGGG 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634 3 1 2 80 4 161642548 161642567 GATAAGAAAGGCATGGACCG 59 161641686 161642508 AAGAAATATCTTGCGGTTCTCC 59 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351 3 1 3 99 19 10165023 10171291 AAGAGGAGCCTATTGTCCTG 59 10171353 10171371 TGGATCGATGCTGTCTCTG 59 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000087085 3 1 2 80 20 20644277 20649958 TGGTCACTCTGTAAACAGCA 59 20644216 20644237 GAGTACTTCACCATCAATGCTC 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000064007 1 1 2 80 4 56409739 56409760 GTGGATGATAAACAGCTAAGGA 58 56406878 56409700 CACTCTACACTCCTTAATGCG 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 2 2 2 94 10 86991677 86992142 TTTGGAAGCAATCAGTCCCT 60 86991602 86991620 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087957 1 1 4 80 1 64009837 64010152 ATAGTCTCAGGACCCATCAG 58 64011142 64011161 CTTCAGGTACCTTTGCAGTC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 3 2 4 84 1 63759680 63842605 CTGTCTTGGACTGACTCTGG 60 63842830 63842848 AGAATCTGGCTGTGCTCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 1 2 3 88 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 2 2 2 80 3 11366300 11366320 ACTTATGAACTGTCAGGTGGA 59 11366113 11366260 AAACTCCATCTTAACCAGCTC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421 1 1 2 80 6 23275142 23275166 AGATGGACTGACGATACCTG 59 23274279 23274298 TTTACAGCTGTCTCAACGTC 58 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 2 2 2 80 15 34457091 34457109 GAACCGAAACTGATGGGAG 58 34456432 34457049 GTAATACTCATTCTGCCGAGC 59 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 3 2 2 81 16 7040472 7043930 ATTGAAGGAAAGTTGCCACC 59 7043974 7043992 GTCTCCTGCTCAACATGGT 60 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 1 1 1 60 5 126092297 126092315 CAGAGAAGGAGGGCTACAG 59 126087258 126087277 ATGGTCTCCTCATAAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000080575 1 1 3 80 4 51930810 51931111 TTTCTCTAGTTCCGGTAACTCC 59 51930751 51930771 CACCATAGACATTGGCAACTG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 2 2 4 80 9 111210939 111210957 GAACCCTCACTCTAGTGGA 58 111208981 111210895 GCTGACAAGCATATACCCA 57 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 2 2 2 80 10 88466148 88468271 TGGATGAAGATCTCATCAAAGG 58 88468311 88468330 CCAGGTAGTTGATTCCAGTC 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000080035 2 1 2 138 13 47962096 47979433 CTTCAAAGAATGTCTGTAAGGC 58 47961162 47961180 GTGTAGGTGCCATCTTCAC 58 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 2 2 2 80 10 70150133 70150152 CTGGCTGACATGATAAACCG 59 70150193 70150447 AGGCTCATATGTACCCTTCAC 59 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000045050 1 1 2 89 14 36188572 36188590 GAAAGAAGCAGCACTTCCA 58 36174392 36188519 GGTAATCTCCTGCTTGGTG 58 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000009377 3 1 2 80 6 134984038 134984056 ATTGTCAAGGATGTGCTGC 59 134984100 134984270 CACTTCCCGTATACTTGCC 58 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 1 2 3 80 20 35279203 35287292 GGGTCAACATCATGTGTCAG 59 35279142 35279162 TTGTCAGACATTAACCATGCC 59 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 1 1 1 60 4 56450465 56450483 GCTCTGCCTCAATCAAGAC 59 56444904 56444922 GGGTCAGAAGTGGAGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976 2 1 3 105 14 34485852 34485871 TTAACCAGATTCAGAGTGGG 57 34485939 34486567 CTCTGTTGACTCTGCTGAG 58 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 3 3 3 80 10 35875728 35875747 GAGGGTATAACAGCATTGGC 59 35875790 35875899 CATAGCCTCCATAGCCTCC 59 NA InUTR Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 1 3 3 80 15 4039969 4040178 TATCACCAGCTTATTGGATCAG 58 4039910 4039929 TGGATAACTGGAGCAAACAC 58 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000080056 1 1 2 92 7 139647409 139649277 TCTAGCAGTCCTACTTTCTTCC 59 139646384 139646402 AATCTGGCGCAATCTTTCC 59 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 2 1 1 125 8 81963866 81963886 CAAGGTATCCTCATTTGGGAC 59 81968457 81968476 GCTTGTTCTTCATCTTTGCT 57 NA DesignNoJunction Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 2 2 2 80 17 1062400 1062421 ATCAACTGGAATGAGGATAGGG 60 1061523 1062361 AACACTTTGATGAACCACCTC 59 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 3 3 3 80 4 156063904 156064913 AAGAACAGGACTTCATCACTG 58 156064954 156064973 ATTGTCGATGACCTGAATCC 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 1 2 3 80 20 3992005 3992023 GAACCATGTCTGGTTGTGC 60 3992066 3992453 TCCGCAGATAGTATAGCCTG 59 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000087592 1 1 3 104 9 118849389 118920879 GAAGGACTGACCAGGTTCC 60 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000072263 2 3 4 80 5 127613022 127613574 CACTATCAGCATTACAGCCAC 59 127613616 127613634 ACAATGACCATGGTGACGA 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 1 2 2 84 12 29935042 29936721 CATTGTCCCAGATGACGAC 58 29934976 29934995 CATCGTTATCACCATCACGA 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000001200 2 1 3 80 12 30082916 30083002 CTGGTCTTACACCCTGAAGAG 60 30069154 30069175 GACTTGGTCTGTTGATCTTTCC 59 NA Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 1 1 2 102 20 3821843 3821861 TTCTCTGCTCCAGATCCTG 59 3821632 3821650 AGTATCGTGCGAATGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 2 1 1 60 1 274650329 274650347 CGATGTTCCGAGAAGTCCT 59 274649614 274649635 ATTGTGGTTACATCTTCCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 1 2 2 80 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 2 2 2 80 X 10404719 10405261 TCCTAAGGAAATACAGATGCTG 58 10404660 10404679 GAAGTAGACCCAACTCTTCC 57 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 2 2 2 80 20 46748394 46748412 CTGCGACATTACGAATGGC 60 46748456 46751536 AAGGAGTCACTCACCAAGG 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 2 1 1 102 7 11625403 11625421 TACTAACAACGTCGCCCAG 60 11626367 11626385 GCTCATCAGTTCTGACGAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 3 1 2 110 9 105944571 105944591 GTTATAAGGTGCTCAACCGTC 59 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 2 2 3 90 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146090 115146109 AGTAGGAACATGAGGAGCAG 59 NA InUTR Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 3 2 2 89 7 60135864 60135882 ATCCTTCTGTGGGAAGTGC 60 60134030 60135817 CATAAGTATGTACTTGTTCCTCAGC 60 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649 3 1 2 116 4 57539329 57540440 ACATTGATGGCGTTTCAGG 59 57521959 57521978 TAGGATAGGCCAGCAATTGG 60 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984 1 1 2 80 13 67600896 67600916 TCACGTTAACATTCACATCCC 59 67600169 67600856 CGTGTAAGTCCACTCTTTGTG 59 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 2 1 1 61 8 117932180 117932198 CTCCTGGACCTGGATTCTG 59 117931633 117931654 CTCACATACTTGGGAGTATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 3 1 1 60 15 33770382 33770402 TCTACAACCCATGTTAGAGGC 60 33770062 33770081 GTCAGAACCTCCAGAATCCT 59 NA DesignNoJunction Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 1 1 3 80 X 10130082 10134379 GAACTTCAGGAATGGTCTTGC 60 10134418 10134439 TTTCTTGCCAAACCAAGTACAG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 2 1 5 82 8 6140680 6150141 AATGTCAGACCGTCAGAGC 60 6140318 6140336 ACTGCATTCTGAGTCCCTC 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 1 2 3 82 2 261397313 261399390 TTAATTCACTCCGGTGGCT 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 3 2 2 178 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428690 12429720 CATCAAAGAACACCTGCGT 59 NA InUTR Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 2 2 2 80 8 116273328 116273347 GTCGTAGTATGATTGACGGA 57 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446 1 1 2 80 20 32253453 32257632 CACTGTGGAACATTTGGCT 59 32253391 32253409 CCACTGTAGACCTGAAGGA 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678 2 1 2 80 5 173620597 173620616 GTTGATGCTTAACTCCAGCC 59 173610411 173620556 CCAGGTTTGTCTTCTACACAG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092 3 1 2 141 10 47950575 47950593 TCTTCTTCCTCACCTGTGC 59 47949961 47950221 GACTTGAAGCTCCCTCCTG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 1 1 1 60 1 229349169 229349189 TTCTCCATCATGCTTCATTCG 59 229349858 229349876 TAGGCCACCAAACTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 2 2 2 83 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121949 TATTCACACTCTGTCCCTTAGAG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000061398 1 1 4 80 17 4258144 4258738 TAAGGGTGGCATGTACTATGAG 60 4258779 4258797 TCTTCACCATAGCCAACCA 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 2 2 2 80 19 10877888 10879117 GAAGCTGGATAAGAAGGACCT 59 10877828 10877846 ATCCACTTGCCGTCATCTC 60 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 3 2 2 80 4 123656429 123656571 ACAAGTATAACTCGTACAGGGAC 60 123656371 123656389 AAATTGCGAAGCCAGACAC 60 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 1 1 2 80 5 129052073 129052348 TACGATTGTGAAGGGTCTCC 59 129052391 129052409 GGTAAGGAAGAGGTCCAGG 59 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 2 1 2 81 5 129052074 129052348 ACGATTGTGAAGGGTCTCC 59 129052392 129052411 TTGGTAAGGAAGAGGTCCAG 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855 1 1 2 80 8 17485240 17485514 GGTCTACAGAGCCTGACAG 59 17485178 17485196 CAGTCGTAGGGTCAATCCC 60 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 3 2 2 81 12 30795658 30795676 GAAGATGGGAGTTACCTGC 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651 3 2 3 132 6 34029245 34053191 AGGTGGTCAACCTATTGATGG 60 34053283 34056189 CAGGCATTATCAGCCATTCTC 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 2 3 3 80 7 40306427 40308077 ACGGCTGTTTAATTAAGGTCC 59 40306367 40306387 CTGGTTTGGAGTTCATGTAGG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404,ENSRNOT00000006624 2 2 3 87 15 109755736 109755754 TGACATAACCCAGCATCCG 60 109755582 109755688 TACAGACCACTTGACAGATAGC 60 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 2 2 2 80 2 238126463 238126483 GAATTGTGGATTTCTGCAGTG 58 238124640 238126268 TTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000066037 2 1 2 99 7 11695641 11695788 AGTTACAGAGATGGCAATTCCA 60 11695563 11695581 AGATGTCTGCTTCCTGGTC 59 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000049974 3 1 2 98 11 70140170 70140189 TCTGACGTCATCCAGATGAC 59 70130713 70130732 ATAGTCCTCCACCTGTCGT 60 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781 2 1 2 91 19 983259 983549 ATGTGGGAACAGTGAGTGG 60 983184 983204 GTAATCCTTGGAGCAGAACAG 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 1 3 5 80 2 1494398 1494416 AAGGCAGGAGAAATGTGGT 59 1493434 1494357 TTTCCATCTTTATCCTTGGCTG 59 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000002683 2 1 2 89 11 37928025 37928044 GAGCTCCCTTCAGAATGGA 59 37923193 37923211 CGATCTGGATCTCTGCTGG 60 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 2 2 2 82 6 132551491 132551509 GCCGGATCAACATCTACCA 60 132551554 132555560 GATCACAACCTGCTGATCCT 60 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 3 2 2 80 4 56732307 56732325 AGTATCCGTGCTCCTTCAG 59 56732367 56732464 GGTAAAGGAGATCCCAATGTG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000035576,ENSRNOT00000036283 3 2 8 137 1 226463361 226468033 GAAGAAAGCCATCAATGGCA 59 226468133 226468151 CTTCTCAAGGCGTCCTCTC 60 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625 3 1 2 82 4 156992539 156993280 TAACTCTGAGGGCACATCG 59 156992475 156992495 CAAATTCCACCTGAAGAGCAG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337 3 1 2 81 X 29476592 29476611 GCAGAGGATTTGGATCTGGT 60 29476649 29485398 CCATATAGTAACCCACATCTTTGTG 60 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 1 3 4 80 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011 1 1 2 80 10 17478589 17478610 ACTTTCTGAAGATAGCCTTGGA 59 17478651 17484906 TACTGACGAAGGGATGCTG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000056172 3 1 3 89 2 200713564 200713663 TACTACATCTCAGATGACACCC 59 200713496 200713514 ACTGGAATCAAGGTGGAGG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000083194 1 1 2 80 8 22292923 22292941 GCGATGCTACCATTTCGAG 59 22293066 22300244 AGAGCAGAAAGTCATAGTCGAG 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000085336 3 1 3 80 1 199597818 199599997 AGTTTGGTGGATCTCGACTC 60 199600039 199600058 CACAGTCATACAACCGTCCT 60 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 2 2 3 82 5 167992675 167992693 TCACGAAGTAGGCTTTGGA 59 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 3 2 2 80 15 27850644 27850662 TGCCACACTCAAGATATGC 58 27850706 27851137 TCCTTTACCCAATCCAAGC 57 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000079466 2 1 2 80 16 47917209 47919991 GAAATACACCACAGGGTCG 58 47920034 47920053 TAAGAACACCAAGAGCTGGT 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 3 2 2 80 20 25064981 25113501 CATCGTGTCAGCTTTGGAC 59 25064919 25064938 TTCACTGTTTGCACTACAGC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 1 2 2 80 7 130124241 130124452 GGAAATGACTACATCGACCA 57 130124180 130124199 GGATATCTTTGCCAGAACCT 57 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 3 3 3 80 3 118160732 118175176 GAGTGAACATAATAGGTGAGCA 58 118175216 118175235 CTATTAGCATGTCCTGCTCC 58 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531 3 1 2 82 1 48026712 48026845 GACCAGTATGGGATCTCGG 59 48026648 48026667 TCACTGCCAGTGTATTAGGA 58 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 3 2 3 81 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973767 70974217 ACAGTTAGTAGTACAGCAAGCA 60 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 1 2 2 107 7 49429648 49531755 GGACAGAGATGTTGCAAGAG 59 49531825 49531843 AACTCACTCTGAAGCACCT 59 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 3 2 2 81 5 131847921 131847940 CCCTGTTTGCCATAGATGTG 59 131846074 131847877 ACAAACAACCTGCCTACCA 60 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 1 1 2 80 9 15626013 15626033 TTCAAGATCTACGACAAGGAC 58 15624085 15625971 CAGCTTGTAGATTGCCTCC 58 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084322 3 1 5 94 14 71629415 71629433 ACCATGCTCTTACTTCCGG 60 71629486 71631483 GCTGATGGTTCATCATATACATCC 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 2 2 3 80 13 57008731 57008750 ATTTCTACTGAAGGGACCCA 58 57008585 57008691 CTCTCATACTCAACGCATATCG 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000021152 1 1 2 113 9 79523411 79544937 CTGGTCAGTGGTAACAATCC 58 79523317 79523335 GTCATCATCTGCCTCTGTG 58 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 3 2 2 82 1 105164874 105164892 CCACAAAGACAGCCATGTG 60 105188625 105188837 GAATACAACCCTGTTGTGACAG 60 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 2 2 2 80 4 133120716 133121612 AAGAAATAGGTGCTTCCGG 58 133120654 133120672 GAGTCTGCTCAATTTCCCA 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 1 2 3 100 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654709 120654727 AGGATGAGACATTGGCAGG 60 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 3 2 2 80 5 4425411 4425430 CAATGCCACTTACCAACTCC 59 4425472 4447456 GTACTGTACTCTGCTGTGGG 60 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000040740 1 1 2 80 1 261428423 261429863 AGATGCAATAGAGGAGACCC 59 261430050 261430068 ATGGTCAGCTCATCCTCTG 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 2 2 2 106 19 10131817 10136921 CACCAAAGATGATTTCAACGAG 58 10131506 10131524 ACTTGTGACAGAGCTTCTG 57 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000075851 3 1 2 60 10 70399804 70399823 CTTTGGGATTTGAGCTACGA 58 70399846 70399864 TGGCAAGGATCAGTAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 3 2 3 80 12 37627111 37627130 ACATGAGCTCTGGTGATGAC 60 37627172 37628218 TTAACCATGGATCGTCCTCG 60 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 2 2 2 80 7 37141469 37141490 AGTGAGAAGCTGATGGATAAGG 60 37141530 37142621 TTCCTTCAACTGCTCTTCCA 59 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357 2 1 2 80 3 118621581 118621601 TACAAGAACTTTGCGTTCACC 60 118613792 118621539 CTGGTCGTAGACAGTCTGG 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 2 2 2 80 4 165622664 165625303 GTTTGTACACCAGACTGCC 59 165622602 165622623 AACTCTACAGTTTCTCCATCCC 60 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469 1 1 2 80 2 120313407 120316295 GGATGGATGGCCAATTAGC 59 120313345 120313366 TAATTCGATCTTCATAGTCGCG 59 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000091209 1 1 3 103 19 62146838 62146857 AGTTCACAGTGATGATGGAG 57 62142133 62146774 CATCATCACCAACAGATACGT 58 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000033017 3 1 2 80 17 1797403 1797422 AGCAGGACGACCTATACCT 60 1770035 1770054 CGTTTGATGCACTCTTTGGT 60 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000066934 2 1 2 81 9 93239043 93239062 GAATCCGATGATGACGAGGA 60 93265896 93265915 AGAGTTCTCCAAGCTGGTC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000079719 1 1 3 102 6 51297217 51316868 GTGCTGACTGTATGTGCAG 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539 2 1 2 80 11 88180474 88180492 TCACAGAACTTACAGCTGC 58 88177150 88180430 CTTCCCTGAAAGGACTTGG 58 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000067528 2 1 2 80 10 55533807 55536249 CTTTCACAAAGTCAAGGTTGG 58 55533747 55533766 ATGTTCTCCTGTGACTTCAC 58 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000032273 1 1 2 80 14 44908623 44908645 GTCTTCATCTGTTCTCTTCAGAG 59 44908684 44917728 CAAGGATAGCCTGGAATGAC 58 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000028329 3 1 2 82 1 217789477 217789496 GAAACGGAAGCAGATGAGAC 59 217786776 217789433 TGGGATGATCACAGCTACTC 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000089310 2 1 2 90 17 15782620 15782640 GCACATTCATCATAACAGGAC 58 15784433 15785054 GCCTGAATGACCTGAATCC 58 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 3 2 2 80 1 19089986 19092968 TCACTGGAGAATGTTTACACAG 58 19093009 19093027 CGTTCCGACATCAATGGAC 59 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000083672 3 1 2 93 4 65113052 65113176 ATCATCAAAGTACCCGGCA 59 65113233 65113251 CATTTCGGTAGACGTAGGC 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 1 3 3 80 19 10432512 10434236 CATCTTCTCCTTCCATAATGCC 59 10432453 10432471 TGCAGTTCCTTCTTGAGGT 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000091113 1 1 2 105 9 17107088 17107106 GAACAGCTACACAGCATCC 59 17107413 17108135 CTCAGCCTTCTTGATTGCA 58 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 2 1 1 60 10 54246608 54246627 ATGAAGTGTTGGAGATCGTC 58 54250733 54250751 TTCTTCACATCCTCAGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000057061 1 1 2 80 5 134738126 134738144 CTCCTCATCTTCGCCTACC 59 134738186 134739022 GATTCTCAGGTTTCCTATGGC 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 1 2 2 80 11 86518398 86518500 GCTGAAGGACAGGATACGA 59 86518541 86518562 TCTTCATCTGAGTCACATTCTG 58 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000 2 1 2 80 5 59016765 59020275 CCTGGAAGAGACTTTGGCT 59 59016703 59016722 TTGAGTTCCAGAAGGGTCTG 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000091220 1 1 4 111 18 56307107 56307125 ACTGATGGTACACATGCGA 59 56307011 56307032 TGTCTGGTCCATCATGGAC 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695 1 1 2 113 11 7210335 7210353 TCCGAAGCTCAACTGAAGG 60 7210429 7265839 CTTCTTATACCTGCGCTGGA 60 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 3 2 2 80 19 10341168 10341413 ACAGGAGATATCAAGACATCGG 60 10341109 10341130 GACAATATTCAGAAGGTCCACG 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770 2 1 2 106 19 10340776 10340794 CTCCCTCAAGCTGATCCTG 60 10340429 10340706 ACTTATGCAGCCTCTCCTC 59 NA Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 3 2 2 80 4 2056438 2060043 TAACTTTAGCCCAGAAACTGG 58 2060085 2060103 TCTGCTTCACTTTCTCCCA 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377 1 1 2 175 1 174461933 174461951 CATCCAGGGTACAAGCTCC 60 174461111 174461375 TAAGCCTCTTGCAGTCCTG 59 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000085609 2 1 2 102 8 117140680 117144408 CCCTGCAATCAAATGGAGC 60 117144474 117144492 TTTCCCAGGTTTCCGAGTC 60 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 1 1 1 60 14 43834071 43834089 ATTCCTGCGGTATCCACAC 60 43837015 43837036 CAGTGTACACAGGAGTTATTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 2 2 2 80 6 106539142 106548952 ATAGAGATGAGCAAAGAGCCC 60 106548992 106549012 CACCTGGTCCTTCAGTATCTC 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000090174 1 1 4 166 13 70243539 70245910 GAAGGACTATCTGTTCCAGGT 59 70249705 70249723 GCACAAAGCCAAACAACAC 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327 3 1 2 80 7 113714389 113714409 TTACCTTGGAGAACATTGGAC 58 113703735 113714348 ACAACTTCTCCTTAGTGGTG 57 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000086385 3 1 2 136 1 218512745 218512763 GATCTGAAGGCACTTCACC 58 218509665 218512645 CACAGCCATGGATCTTTCG 59 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 3 2 2 80 17 17828342 17836683 TAAAGTTTGAACGAGAGGTCC 58 17828282 17828300 TGATATGGCACACTGTCTG 57 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841 1 1 2 80 1 28564233 28564253 ACAGCAGCTTTCAGTAATGTG 59 28567839 28569649 GATGGAGTACCCAATAGAATGAG 58 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000039677 1 1 2 130 1 217648636 217648655 GTTCAGACCAAAGGACATCC 59 217645492 217648543 GTGGGTAAACGTCCATCTG 58 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 2 2 2 88 4 170779901 170780880 TTTGATGCCGTCAAGAACG 59 170779831 170779850 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000078799 3 1 2 80 4 11161058 11161079 AGAGCCATTTATGAAAGTAGGC 59 11146265 11152026 ATAATCTGGACTGTTGCCAG 58 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000035522 2 1 2 83 4 165457994 165458013 ATAAGTCTCCAGGGTTGCAG 60 165457314 165457948 ATTCGGAGTGAGCTCTGTG 60 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000046645 1 1 2 80 1 133431539 133431557 GTTTGATGAGGACGGAGAC 58 133411266 133431499 GGTTGTCCATCTCTAATAGACAG 58 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491 3 1 2 80 9 97218477 97225640 TCATAACTGGGACCATCGA 58 97218415 97218434 AGAGTTTGACCTTCAGAGCT 59 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000056724 1 1 2 80 9 97190491 97190510 GTCCTTCTGCAGAGTTTACC 58 97186463 97190448 GGTTTCAACCACATTCCGT 59 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 1 2 2 80 8 118627833 118627962 CTGTGTACATTGATCAGACCA 58 118628004 118628022 TGCCTGTTAGTACATCCCA 58 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 3 2 2 80 19 10756663 10756682 GTACATTGAAGAGCAGTTGC 58 10756077 10756620 TCTTTATGGTGCTGCAGTG 58 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 1 2 4 81 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532950 120532968 CTCATCCCTCATGGAGCTC 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 3 2 4 83 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532948 120532966 TTCTCATCCCTCATGGAGC 59 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995 1 1 2 80 13 69984266 69984290 GCATCTTCTTGTCAACATATAGAGG 60 69962602 69984230 TCAAGTTTCCATACCTGTCCA 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 1 2 3 80 12 41202607 41205272 TGTCCTAGGTCATGTTAGCC 59 41205315 41205333 CCCAGGGAGATACATTCGG 59 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 1 1 1 75 8 18431101 18431121 ATATTGATGGCAGTCTTCCAG 58 18433988 18434006 CTCTGTGAAGTCTTGCCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935 2 1 2 81 3 122148170 122150133 CAGGTACAGTCTTTGATCCAG 58 122150176 122150194 GCTTCTTCTCTTTGGGCAG 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000080382 2 1 3 84 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29866883 29868358 GGTGTGCCTATTGTAGCTG 58 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 1 2 2 82 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821384 144826170 CGATATCATTGCTTTGCTCTC 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000089723 1 1 4 80 1 128217311 128226057 ATCTAGAGCTGAATGCCCA 58 128217249 128217267 GAGTTGTCACAGACACCAC 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000091163 2 1 3 81 10 74512016 74517379 TTACATAAGAAACCGCTCCC 58 74517422 74517441 AATGATGCCATGTGTCAGAG 58 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 1 2 3 80 5 12526928 12526948 GATAAAGCGTTGCATACTCTC 57 12504496 12524950 ATCATATGCAACCCTGAGC 58 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000049857 2 1 2 95 3 122699772 122701347 GAAGATCAAGCCAAAGAACTCC 60 122699698 122699717 GTCATGGAGACCAGGTTCTC 60 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 2 2 3 80 17 21639929 21676091 AATAGGATTCCAGGAGTCCC 58 21639868 21639888 CATATCCTTCCACTTCACAGC 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335 2 1 3 80 17 21639929 21738502 AATAGGATTCCTGGAGTCCC 58 21639868 21639888 CATATCCTTCCACTTCACAGC 59 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 3 1 1 63 8 40160486 40160505 AGGAGTTGATCTCAGAAGGA 58 40160149 40160167 AACTTCTCTGTTTCCCAGG 57 NA DesignNoJunction Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367 1 1 2 114 X 15100049 15100706 TGAATGGAGAGTCCCTGGA 60 15100784 15100802 CTAGAGTAGCTGCGACCAC 60 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388 2 1 2 82 1 25734959 25734981 GGCAAAGCAGAGAAACCTG 60 25720427 25720445 GCTGCCATCTTTGTCTCTG 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000088469 1 1 2 80 14 78685198 78685222 TTCTTCTCCAAGATCATCTCCTC 60 78685139 78685157 GAGGTAATCCCTCGTGAGC 60 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 2 1 1 122 7 122160443 122160461 CTGAACAAGCTTCAGGCTC 59 122162661 122162679 AGTGGTGCTGGAGTTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 2 2 3 84 1 135365201 135365219 TGAAAGCCTTAAGCACAGC 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000024465 1 1 2 91 1 255579498 255582142 TTCCTCTTAATACTCGATCGTC 57 255582194 255582212 ACTTCTCCAAGTTGCTGTG 58 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 1 2 2 80 8 6872678 6872700 GTCATGACAGCTTTAGAACTCAG 60 6872735 6880601 CTTCCTGTAGTCATTCTTGAACTC 59 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 3 2 2 86 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 1 1 1 68 7 102586853 102586871 ATTTCCTTTGGGAGGTGGA 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 1 3 4 80 14 79355780 79355798 TGTTGCTGAGACTGAGGAG 59 79355840 79387347 CTAGCAAGCAAATTCCTTGTG 58 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 1 3 4 80 14 79355780 79355798 TGTTGCTGAGACTGAGGAG 59 79355840 79387347 CTAGCAAGCAAATTCCTTGTG 58 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 1 3 3 138 1 168946041 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571 2 1 6 80 1 41798815 41798834 CCACATGAGTATCGTTGAGG 58 41796343 41798774 GTGCTTTCTGCATTAGATCTG 58 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000043387 3 1 2 86 1 225932032 225937539 TGGACCCTAAGGAGAAGGA 59 225931964 225931982 CCTCTACCTTCTGTCTGCG 60 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 2 2 2 80 12 40702375 40703017 TTAAAGCAGCATGTGGAGAC 59 40703059 40703078 CTTGACAACAGAAAGCTCCA 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192 1 1 2 92 8 54975819 54978583 GGACCAAGAGGTTCTTGCT 60 54975745 54975763 AGAACATACTACCTGCGCC 60 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250 3 2 3 80 7 107130756 107141724 ACAAAGCCCAGAAGAAAGC 59 107130694 107130716 TACTATAGTAGACACATCAGGGC 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388 3 1 3 81 7 135524187 135524207 CAAAGTTGTAGCCACTTACCG 60 135515988 135521710 TGAGGTAACTGGAGGTCCA 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344 2 1 6 165 20 4614410 4614524 CGAGTACCGAGTGAACCTG 60 4614653 4614671 GTACAGAACGAACAGCTGC 59 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 3 2 2 80 2 122625544 122628091 GCATGACAGAGTTAGGATGTG 59 122625484 122625505 CTGGTTCTTTCAATTCTTGCTC 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000088002 1 1 4 80 12 38447620 38450301 GGAGAGTCAGATTGATTTCCTC 58 38450340 38450360 ATCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 2 1 4 108 12 38446874 38446893 CCTGGAACTTCAACTCAAGG 59 38447618 38450292 AATCATTTGCTGACTCTCCTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 3 1 4 108 12 38446875 38446894 CTGGAACTTCAACTCAAGGA 58 38447619 38450293 CAATCATTTGCTGACTCTCCT 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 1 2 2 80 1 201473251 201475859 GACTTTCTATGTGCAGGCTG 59 201475902 201475920 CGCTGTGCTACAATAGCTC 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 2 2 3 107 3 48295248 48295266 CTCAGATCTCCAAAGCCCT 59 48293661 48293683 AATAGATGTGCTGGTGGCT 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099 2 1 2 81 1 178926604 178926625 GAACAATGCAACATTGTACCTG 59 178926664 178927616 GGGTGTCATCTTCATCTTTCTC 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000080031 3 1 2 85 17 29140010 29140028 ATTGTCCGAACAGTCGGAG 60 29026163 29139965 GCCTCATACACCATAATCTTTGG 60 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 2 2 2 80 9 94230655 94230796 GACGTATCTCATGGGCCTC 60 94230839 94230858 TTCAGAGATGGGTCCATCAG 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 2 1 1 69 2 140721883 140721902 CATCATATCGCTGTGGATGG 59 140726487 140726505 GTACAGGAGACCCAGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 2 3 3 123 5 2051972 2054772 ACACAATGGATGGAGAGGA 58 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 1 2 2 80 8 76534221 76537244 ACGCAGAAGGACAGATCTC 59 76534159 76534179 GGGACATCTTCAGTTTAGTGC 59 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 2 2 2 80 7 18530920 18533485 ACTTCCTCATGGACTTGGTG 60 18530859 18530877 CCTTTGTTCAGGTGGTTGG 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341 3 1 2 81 3 35173755 35175389 GAAGTCCCTTTCTTGCAGG 59 35175434 35175452 CTTTGCCCTCATCGATCAC 59 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000018137 3 1 2 101 1 234364031 234377621 CTGCACAAATTGAAGTGATACC 58 234377683 234388938 TCCTGAAGAATCCCTTGCA 59 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 2 2 2 80 2 22348104 22349767 GGAAGATAGCAACAATGATGGA 59 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 2 2 2 81 9 92892618 92893238 TGTTCAAGGTGTTTGTGGC 59 92893283 92893301 TCGATGAGTTTGGTCTGGT 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000085332 3 1 2 87 9 92878367 92880330 CTCATTGACTTTGAGGGCA 58 92880378 92880399 CAACAGTAGGAGTTCTTGTACC 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 3 2 2 80 10 89949750 89949768 AATCCCAGGGATCCATCAC 59 89946490 89949706 GCATGAACACCTTGCTCTC 59 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076 1 1 2 96 8 58149245 58149266 CTCAGAAACAAGCCTATTACAG 57 58153902 58154021 CAGAAGCTTCAGTTCTTTGTG 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000057036 1 1 3 99 12 46353453 46353471 CAGCTTTCCTGACAAGCAG 59 46352198 46353392 AAGTAATTTAGCATCGGCCTC 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 1 3 3 80 7 2470085 2470104 GGCTGTTTCCAACATTCAGG 60 2470147 2470295 CCCGTTTCATCAACCTCCT 60 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 2 3 3 80 7 2470084 2470103 AGGCTGTTTCCAACATTCAG 59 2470146 2470294 CCGTTTCATCAACCTCCTC 58 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000078977 2 1 2 88 8 94352240 94368766 TCTCAACAAGGACTTGGCT 59 94352170 94352188 TCTCCTGGTTGACAATGCA 59 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599 2 1 2 80 2 24210842 24224805 ACATACACAGGTTTGCAGC 59 24224849 24224867 CTGTGGAACCTTCCTTCAG 58 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000015127 1 1 2 80 16 54468876 54471424 CTTATCAACAAGTCTTCTGGGT 58 54468817 54468836 CTAAACAGTAAGCCATCCCG 59 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000082564 1 1 3 96 1 135800004 135800023 CTTCATCCTCTACACCACCA 59 135791506 135799945 ATACTCTGTGCTGGTGCTC 60 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 1 2 3 80 1 86999142 86999162 TATCTGTAATCCTTGTGGCCC 60 86999202 86999873 GAATCAAACTCCACCATAGCC 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 2 2 3 80 1 86999148 86999166 TAATCCTTGTGGCCCTGTC 59 86999209 86999879 TGCACAGAATCAAACTCCAC 59 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 3 2 2 80 10 56228461 56228666 GATCAGTGAAGAAGCCCTG 58 56228709 56228728 GCTGGAATAATCTCTGCCAC 59 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 2 3 3 80 7 117362799 117362817 CGCTTACCTTACTCCCACC 60 117362656 117362757 ACTTGCACATTCTTTAGCTGG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000078720 3 1 2 84 8 116375786 116375808 CGGGAATATCAACTCAATGACTC 59 116371068 116373568 ACTGGAAAGGGATATAGTCACTC 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 3 3 3 113 4 149972332 149972350 CTACAGAAGGCATCTGTGG 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000085435 2 1 2 81 16 54112013 54112031 AGCTCCTCAGAATGACAGG 59 54107337 54111968 AGGATCTCTGGCCTTTGAG 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 3 4 4 135 10 65309839 65310757 AGGTGAAGATCATGACGGAG 59 65308297 65309741 GTCAGAGTCCCAAGGATGG 60 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349 3 1 3 98 8 77295641 77295975 ATGACTCTCAGGTGGATGG 59 77295561 77295579 CCACTAATCCCACGTTCAC 58 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000037708 1 1 2 110 7 15072934 15072952 ACACCTTGAGGAACCTGTG 60 15071206 15071226 AGAGTTTCTCCAACAACTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000024445 3 1 2 80 9 94897828 94898733 CTATCACTAATATCTTTGGGAGACG 59 94898771 94898789 CAGAAGCAGGATGAGTGTC 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000084806 1 1 2 80 1 69616214 69618778 GTATGATCTGTACACAGGGCT 59 69618820 69618838 CATCCAGGAGCTTCCACTC 60 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 1 2 2 80 8 85437470 85442944 GGGAGGTTAAGTCTTTAAAGAAGC 60 85442983 85443001 AGAGATGGTCGTTCTCCCT 60 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829 2 1 2 80 19 17024132 17045084 ATGTGTATAAACTGAGGCTCCT 59 17024073 17024094 GATAGAACTCGTCATCTTTGGG 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000080836,ENSRNOT00000082494 1 2 10 146 10 87136050 87137904 GGTGTCTCAGATTCATTCTTAAGG 59 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 2 5 10 83 10 87127013 87127032 AAAGTCGACAGAGACAGTCG 60 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000052017 2 2 3 84 4 150681953 150681974 GATGCATGGAATACATTTGACG 59 150674643 150681909 TATGTTCAGCTGGGTGTACC 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 2 2 2 80 11 34595205 34597630 TCTCAGTTTGGCTTCATACTC 58 34595145 34595166 CCAGTAAGTTAAGCCTAAGGAG 58 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 102 10 109900902 109901401 AACTGAAAGTGGTCGGGAG 60 109901465 109901485 GAGATTTCTGCCTCTTTGAGC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 1 2 3 81 2 27003597 27003617 CTGATGAGGACAAGTGTTCAC 59 27003657 27006171 TCATATTCCTCCTGAAGGTCTG 59 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 1 2 2 80 8 94008008 94069194 AGGAATAAAGAGCTTGCCAG 58 94007947 94007965 CTCCAAACAGGTTGTGGAG 58 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600 1 1 2 83 8 94007925 94007945 TGCTGTTGATACTATCGAGGA 59 93950379 94007880 AATGAGAGCACCAAAGCTG 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769 3 1 2 80 11 31836193 31836212 CCACCTGAATTTCTCTTGGT 58 31836253 31836675 GCTTCCATTTCTCAATACCCT 58 NA Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 1 1 1 60 3 20457272 20457293 TGTCTACAGGGTTATAGTGCTC 59 20456947 20456965 TCCCTATTTCCCTCTCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643 2 1 2 85 8 29525124 29714297 TGCAAAGTCAGGTGTACCA 59 29714345 29714364 TTGTCATTCCCAGCGTAGAG 60 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837 3 1 2 81 2 104917501 104919777 TAATGATGGAACATGTCACAGG 59 104917441 104917459 GAGGACAAAGAAGGCTGTG 59 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 3 2 2 131 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702046 21702064 TTGAATTGCTGCCTTTGCT 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129 1 1 2 96 20 5133559 5133663 GTCTCTGGAGCTCTAGGTG 59 5133723 5133741 CAAGAACAGGCTGCATGAG 59 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000021740 1 1 2 100 3 120696924 120696942 GTATGGAACGAAGCTGCTG 59 120697006 120723884 AATTCAGCAACTGAGCCCT 60 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 3 3 5 81 X 159169769 159169789 CAGTATTACTGCGTGGATTGC 60 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 1 1 1 60 8 55037823 55037841 CAGAAGGCACAGTTCACTG 59 55038755 55038777 CACACTTATCCCAACATAGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 3 3 3 80 8 22427973 22427991 GTCCTTGACCATCCATCTG 58 22428034 22429337 TTGACTGATAGCGTTTCTCC 58 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000085320 1 1 3 80 8 22423610 22424313 CTAATGTACAGAGATGGCGT 57 22424353 22424374 GGTATACTGAAGAATGCTTTGC 58 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 3 2 2 81 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296077 116296096 GAACATCAGGAGTGCTTCAG 59 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096 1 1 2 98 13 84084287 84084305 GTATTCGCCAATGCAGGAG 59 84083829 84084225 GAAGCAATCTGGGTTGCTG 60 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000084429 3 1 2 80 8 116758350 116758441 TCTGATAAAGTGCTTGAGGAC 58 116758482 116758501 GTTGGGATCAAATTGCAAGG 58 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 2 2 2 80 2 206591828 206591848 TTCAGAAAGGATCGATTGACC 58 206575543 206591786 TTGTAGTGCATGGGATGGT 59 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 2 2 2 80 1 100832592 100832610 AAGGTGGTAGTGGTTGGTG 60 100832654 100833315 GATGGTGACCTTGTGTCCT 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 1 3 3 80 8 78379223 78385826 CCTTGGCATCTATTTATTCTCCTG 60 78379166 78379186 GTGAAGGAGATCCTACTGGTG 60 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 2 2 2 80 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548465 AAACTTCTGGTACAGCAGC 58 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 2 1 2 169 7 26690106 26690124 TGCTTAGTCTTGCGTTCGA 60 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327 3 1 2 86 1 71389669 71400184 GTATTCCTGAGGTGCTGGT 59 71389601 71389619 AACCGACAGATTCTCCTGC 60 NA InUTR Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000067975 2 1 4 83 12 48167554 48168612 CTGATCCAGAGGCAAGAGG 60 48167350 48167370 CTCCACGTTCAGATATCTCCT 59 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000081472 2 1 2 80 2 27943423 27943447 GCTACCTTTGCCTATACTCG 58 27943362 27943380 GTCCCTTTGGTGATCACAC 59 NA Rattus norvegicus 81 Pdzd7 ENSRNOG00000032946 ENSRNOT00000043623 2 1 1 80 1 264785986 264786353 GGCTAGATAGATTGAGCAATGG 59 264785927 264785946 AGGCATAAGAGGAGACACTG 59 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 2 2 2 80 19 24853413 24853431 TGTATGATGTTCAGCGCCA 60 24853473 24853869 AAACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 Zzef1 ENSRNOG00000024535 ENSRNOT00000036278 2 1 1 80 10 59433550 59434632 AAGTCAGTGCATCAGTTAGG 58 59434673 59434693 TTTCCACAATGGAGAGTTCAG 58 NA Rattus norvegicus 81 LOC102551064 ENSRNOG00000037159 ENSRNOT00000056084 1 1 1 60 2 205714425 205714444 AGTGGTGAGAGCCATTACTG 60 205714465 205714485 CTCAACATCAGGCCATATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc162 ENSRNOG00000037668 ENSRNOT00000000340 2 1 1 80 20 46280236 46283861 TGAAGCAGATGAGAAACCG 58 46280174 46280192 GATTCAGTAGCTCCTGCAC 58 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 3 1 1 80 7 18488835 18488855 CAGTACATAGGCCAAGATGTG 59 18488895 18491006 GCCAGAAGAATCTTCCATCAG 59 NA Rattus norvegicus 81 LOC100360876 ENSRNOG00000042823 ENSRNOT00000044379 3 1 1 60 X 97075958 97075977 CATACCCAAGTGTCACAACC 59 97076000 97076018 CAGCCAGACCCATTATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 3 2 2 80 X 20144759 20144970 GGAAGAAATGGAGGTGACAG 58 20144698 20144718 TCTGGATCAGAAGGTTGAGAC 59 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777 1 1 2 80 X 157869212 157878009 GTCTGATTTCAGTTCATGGTGG 60 157878047 157878068 TTCATTTGTAGATGCTCCACAC 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 1 2 2 80 8 36235134 36240064 CTTGACTGTCAATGGACCC 58 36240107 36240126 CATTTGATCTGGCCCTTCTC 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 2 2 2 81 3 51605330 51606646 TTGGTACACTCTTTGTTCAGC 59 51605269 51605287 CGGGAGGATTACTCAACGT 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 3 2 5 80 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664246 28730317 CCCACATAACCACTTTGTCC 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000074685 3 1 2 82 13 36154971 36155958 TGTCTCAGGCTGATTTCGA 59 36154907 36154929 GATGAACAGCATCTCTTCATCAG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 2 3 6 80 10 89221805 89221824 TCCATTACTTACCACAGCCC 60 89218042 89221764 TCAATAAATGGCTCCTCTCCT 59 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 1 2 2 124 10 56578182 56578293 CGCCCATGAATATTAAGTACGAG 60 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607 2 1 2 110 8 118323044 118323062 ATTCACCCTACTGGGAGTG 58 118323136 118325376 GTCTACCCTAGACATGCCG 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 3 2 2 80 10 90207224 90207243 GAGGAGATCATGGTTTCCAC 58 90207283 90208573 GGAACTGGTAACAATCTCAGTC 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 3 2 2 80 2 210448739 210448760 GAGTCAGAAGATGATTTCTGGT 58 210447883 210448700 ATCATCCAGGATCATGTTAGC 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000075057 2 1 2 128 2 31751773 31753438 GAAATGGATCCACCAGCAC 59 31750826 31751686 TACTTCTTCCCTTGAGATATCTCC 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687 2 1 2 80 2 31764120 31770167 TTCTTGATTGTGATGCCGC 59 31764058 31764077 CGAGATAGCGTTTGAAAGCA 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 2 2 2 88 9 45536282 45538226 AAGTCATGAAGCCAACTGG 58 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 3 2 2 89 9 45536282 45538227 GAAGTCATGAAGCCAACTGG 59 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000056170 1 1 2 89 5 150865471 150865489 TCAGTACCAGACACTGCAG 59 150865542 150880364 GTGCTTGAAGCGAAAGGAG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 3 4 5 80 8 99640718 99640736 CGAGAAGTCATGACTCTGG 57 99640778 99717130 CTGGATTTCTATCTCCTGGAG 57 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000091896 2 1 2 82 2 211221389 211221407 TAACTGCACGGATTACCAG 57 211221089 211221345 GGTTATTCTTCCTCTTGTCCA 57 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 1 2 2 80 20 50224963 50234277 GAGAAAGATGTCTTAGAGTGGGT 60 50234317 50234335 AATGTTCTTCACGTTGCGG 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 2 3 3 80 3 147803946 147803964 TTACATGCACACTGTCACC 58 147803023 147803902 TCCAGGAATACCATGTCCT 57 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 3 2 3 200 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798792 147798810 CTGTTTCGGATGGTACCCT 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 1 2 3 81 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294626 89294646 GATGAGACAGTACCTCTGGAG 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169 3 1 2 153 1 80609768 80609907 AGAACCTTAGATCCAGGGTG 59 80609291 80609310 TTTATCCGGTAAGCTCTCCA 58 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392 1 1 2 80 8 52158191 52168552 TTACCATCATCACAGACACCA 59 52175835 52175853 GTTCTTCTGCGGAATTGGG 59 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 2 2 2 80 2 27976330 27976348 ATCATGCCTTGGAACACCT 59 27976391 27977924 ACAGGACAGTTTGTCCAGAG 60 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 3 1 1 95 14 3064737 3064755 GTTCCACCAGAAGTCAGAC 58 3067151 3067169 CTCTGACTGAAGGCTTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202 2 1 2 83 12 51312310 51313642 ACTGCAGAACAATTCTGCA 58 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 2 2 2 80 1 213516909 213516927 CAAGAAGTGTCTGAGGCTC 58 213516968 213517315 TTATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431 2 1 2 80 X 23488039 23489615 CAGAGGACAAGAAACAGGAC 58 23487978 23487998 GGGCTGATGTGCTATAATAGG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000008785 2 1 2 98 7 97967524 97976921 CAGCAGCTGCTATTGTGAG 59 97967444 97967464 GATATGAAGACAGCGTAGCAC 59 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000039281 3 1 3 80 12 47193996 47203595 CCTCTCGAGAAAGGATAGATCG 60 47204371 47204390 TTGTCCTTGTCAAATTCCCG 59 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 2 2 2 80 10 90403056 90403076 AGAAGAAGGAGAATGAGTCCA 58 90402848 90403015 TCGTGATTCCTATCCGAGTG 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 3 2 2 60 16 47181358 47181378 TGTAATGAATGTGCGAAGCTC 59 47178444 47178464 ATCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000081376 2 1 2 82 3 5817509 5817531 GTTAGACACTACACTCAAGTTCC 59 5816034 5817467 GTGTGAACACTGGAGATCG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000083487 3 1 2 80 9 53706325 53706345 CGCTCTACCAAGTTAAAGAGC 59 53706386 53708455 CCATGTGCAACTGTAAAGGT 59 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 1 1 2 93 5 157899481 157899499 CCTAACCTGAACCAGAGCA 59 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000019180 3 1 2 80 9 46763228 46765332 TGTAAGGATTGACTTGACTGC 58 46765372 46765392 TAGTCTGTCACTTTGTGAGGT 59 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515 1 1 3 80 8 96132533 96132551 GACATTGCTTGATGCTGGT 59 96131774 96132489 CTATGTGCAACTAGCCCTG 58 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000005561 1 1 2 171 7 94489770 94500831 ACCAAAGGATCAACAGAAGAG 58 94488999 94489637 TACTTTCTTCAGCAGCCTG 58 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864 2 1 2 80 9 52699810 52704879 ACAGTAACAGGCACCAGTC 60 52704922 52704941 TTTGTTCTTCTCTGACCCGT 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 2 2 2 80 16 56326746 56326767 TTTAAGGAGGAACAACTTGGAG 58 56326802 56350386 GTCATAGCAAAGACTATACACAGAG 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000085300 1 1 2 138 16 56385938 56385956 AAGCAGCAACTTCCAAAGG 59 56388507 56389755 AGCAGATACCTATATGGATAGCC 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000085300 3 1 2 140 16 56385938 56385956 AAGCAGCAACTTCCAAAGG 59 56388507 56389757 TAAGCAGATACCTATATGGATAGCC 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000001160 3 1 2 80 20 5004622 5004641 GTGTTAGACACCTGGTTCTC 58 5004682 5004782 CACACTGAGATCTTCTGACTG 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 3 2 4 122 14 84308102 84308362 GAGCTCGGAACTTTGACCT 60 84308575 84309824 TGTACTTCTGGATCACCTCTG 59 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924 2 1 2 150 8 56609406 56609424 AGAACGAGCATGATGAGCA 60 56609537 56610458 GAACTTAATGCCTGGAGCTG 59 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 1 1 1 60 2 223029564 223029583 TCCAGTACAACTTCTAGGGC 59 223044887 223044906 CTGGATGTCACATCTCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 1 2 2 80 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422286 126422307 AGCTCTACTTCTTTACACTGCA 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000073469 3 1 2 80 2 44379018 44379391 CTCTTTAAATCTGGTCAGTCTACC 59 44378961 44378980 GTGCAAGTCAGATTCCTGTC 59 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000080257 1 1 2 89 3 2716628 2717612 TGCAGAGGACTGGTTACTG 59 2716557 2716575 ATGTTGAGAGCAATGGCAG 59 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262 1 1 2 80 3 161989754 161989774 CGAGTTCATCAACATGGATGG 60 161988247 161989712 TCACTGTAGTGGGACAGGA 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000005817 2 1 2 80 8 132173020 132173647 CCTGTTCACAATGTACATAGCT 59 132172961 132172979 TCTTCAAAGCAATGCAGGA 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000087740 1 1 3 80 20 48504381 48504399 TTGACCAAATCGCCTTCAG 59 48504441 48519707 CAGATCTTCCTTAACTGCCAC 59 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 1 2 2 80 3 132968383 133012108 TGTGAGTACCTCAGGATGTG 59 132968322 132968341 TCTTCAGCTTGTAAAGCGTG 59 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787 2 1 2 111 3 71863402 71863420 GTACAGAAGGGTGACTACG 57 71854420 71863327 CATCATAGTCCCATTGGCT 57 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 1 1 2 195 20 49325108 49330220 TGGAACATCACATTTCAAGC 57 49332433 49352985 CAAATCTGTCATTCTGCAGTC 58 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000050637 2 1 2 80 16 74550678 74550699 TCAAGTTCTTTCTATGACCGGA 59 74550735 74551227 CTGTATCCTCCTTCATTCTTTACG 59 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000086242 1 1 2 89 3 80411622 80411640 TACCGAACTTCCACTCAGG 59 80411689 80412765 GAAGAGCTGCTCTTTCTTATAGC 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659 1 1 2 81 16 67522476 67522494 TTGGTGTCACCCTCTACAG 59 67522536 67527006 AGAGAATTTCCTGTCAATGCAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000015879 2 1 2 81 16 67522515 67522533 GAGTGGACGTCATTGACTC 58 67522575 67527006 AGAGAATTTCCTTGACGAACTG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000079020 1 1 2 80 3 52660199 52660217 CTGCTTTGTACATGCTGTC 57 52659851 52660156 GCATGCTGAATAATGAGTGC 58 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126 1 1 2 80 3 52660195 52660214 CTTTGTACATGCTGTCTCCC 59 52659848 52660155 TTAGCATGCTGAATAAGGAGTG 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000030119 2 1 2 84 3 162465037 162465656 AACTCTCGACCCAACTGTG 60 162465704 162465722 CCAGACCATACAGCAGGAC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 3 4 4 113 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358567 TAAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 2 2 2 81 5 157731174 157731192 GATGCTATGGCTGCAAACC 60 157731236 157737867 GTCCTTCTCCATCTGTCTGG 60 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 1 1 1 266 3 171302444 171302462 AGCCACTACAAGCTGTCAG 60 171296061 171296079 ATCAGACAGCGAGATGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 2 2 2 80 16 90325669 90332898 CATGGACCTCAGTGTTAGC 58 90332939 90332960 GTATAGATGAAGAGGCAAAGGG 58 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 2 2 2 80 3 176768442 176768460 AGACAGCAGAGCTAACCTC 59 176762332 176768401 ACATGTTCATCGTACTGAACAC 59 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 3 1 1 62 16 83358444 83358465 CAACATCTCTATATGGGACACC 58 83381221 83381239 CAGTACATGGAGCCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000063906 2 1 2 165 3 159333761 159335181 GTTAGCCTCTTCCAGGACG 60 159335309 159335656 CCTCCTTGTAACCTTTGGGA 59 NA Rattus norvegicus 81 AABR07049386.1 ENSRNOG00000054001 ENSRNOT00000080806 2 1 1 60 5 120176311 120176329 TGGCTCAGTTATCACAGTG 57 120176269 120176290 TCAGTATTCACAGTACTGTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056690 ENSRNOT00000077097 2 1 1 60 2 26443534 26443552 GCATACCAGATGTGCTGAC 59 26443492 26443513 CACAAATTACACAGTTTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055744 ENSRNOT00000092215 2 1 1 60 5 42395560 42395578 GTGGTCTTCAGTCAAGGGT 59 42395599 42395620 GCTTGTTTGTAGGTTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012582.1 ENSRNOG00000060042 ENSRNOT00000084190 1 1 1 61 2 198360395 198360413 TTGAGTTCTTCGTCGTTGC 59 198360438 198360456 AAGAAGACCCGCATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.1 ENSRNOG00000039689 ENSRNOT00000050796 3 1 1 62 11 43503666 43503688 CACTCTATCTGAATGTATGGCAC 59 43503711 43503729 AAACATTCCGTGGTTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044273.1 ENSRNOG00000000748 ENSRNOT00000000975 1 1 1 60 20 845249 845268 ATGATGCCAGCTTTGAAACC 60 845290 845309 GCCCACAAGAAGAACATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038957.1 ENSRNOG00000054638 ENSRNOT00000077667 3 1 1 60 X 64914282 64914302 GAATCAGGATCTTCAGCTGTG 59 64914324 64914342 GTGGTCTGCAAAGATGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056329 ENSRNOT00000081950 2 1 1 64 2 131621020 131621038 GCTGAGGATCATCCATTCC 58 131620974 131620992 CAAGTTTCCCACACTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056497 ENSRNOT00000090063 1 1 1 60 2 180669056 180669078 CAGAGAAGATATCATGATCACGG 59 180669098 180669116 GAGTGCCATGGATAAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051920 ENSRNOT00000077081 1 1 1 66 2 198528060 198528078 TTATCCATTGCACTCCGGA 59 198528108 198528126 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059354 ENSRNOT00000080674 2 1 1 60 2 170631760 170631780 AGGACCAGTCTTTAGTCAGAG 59 170631720 170631739 GTTTGGAGGTTGTAACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056607 ENSRNOT00000087060 3 1 1 60 2 263540971 263540989 TCCTGTCTGTCAGTAGGTG 58 263541010 263541031 GGTCAGAATACTGAGCATTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000056834 ENSRNOT00000088758 2 1 1 61 11 81375613 81375637 GTTTCTTAACTATACCTGTCTGCTG 60 81375576 81375594 TGTATGAGACCAAGCGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060810 ENSRNOT00000088888 2 1 1 60 5 140987512 140987530 GAGCAGAGGAAATCCAGAC 58 140987554 140987572 CAGAGTTGTAGAGACAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094348.2 ENSRNOG00000057778 ENSRNOT00000091094 1 1 1 165 20 5125467 5125485 ATGAGAAAGTCCACAGCCC 60 5125318 5125336 TACTTAAAGTGTGCGCACG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053219 ENSRNOT00000078375 1 1 1 60 5 144839361 144839379 TAGGTGGCAGAAAGGACAG 59 144839319 144839337 TCAGAGGTTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058326 ENSRNOT00000077886 1 1 1 60 8 26093345 26093365 GGATACAGAAAGACCTGTTCC 58 26093387 26093405 CAGACTTTGGAGGAGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 3 1 1 66 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762812 13762833 TACCTTACTAGACAGGTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 1 1 1 60 16 7099154 7099174 GAAGCAATGATGACAGATTGG 58 7099114 7099134 GGTTGGATTGAACAAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 2 1 1 60 16 7099153 7099174 GAAGCAATGATGACAGATTGGA 59 7099114 7099134 GGTTGGATTGAACAAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000059039 ENSRNOT00000082785 1 1 1 60 8 69760815 69760835 ACTGTACCTGGTATTGATTGC 58 69760856 69760875 TGTATGTGACTGTCTACGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000059039 ENSRNOT00000082785 3 1 1 60 8 69760815 69760836 ACTGTACCTGGTATTGATTGCA 60 69760856 69760875 TGTATGTGACTGTCTACGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059021 ENSRNOT00000089219 3 1 1 61 11 46962275 46962293 ACTCCATATGCGTCCATCC 59 46962232 46962250 CACCAGTTCACAGCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048748 ENSRNOT00000074754 2 1 1 76 11 5746945 5746963 TCTTACTGTGTTACGCCCT 58 5746887 5746905 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 2 1 1 67 2 197784292 197784310 GATCTCTGTGAGTTCGAGG 57 197784341 197784359 CTCTGTGTATTGCTGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053492 ENSRNOT00000089036 3 1 1 63 5 70726343 70726361 GTTACAGGTATGGCTGCTG 58 70726388 70726406 TGAGGTGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054944 ENSRNOT00000090284 1 1 1 60 5 101849474 101849492 GCTCAGTTGAAGAGGACGA 60 101849432 101849451 ATACCCTTGACCGAAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054664 ENSRNOT00000089768 2 1 1 61 8 95093803 95093823 GAAAGAGGCCATATCTACCCT 59 95093762 95093786 GGCTACTAATCATTAAGATGCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 3 1 1 157 11 43415692 43415714 TTTCTCTGGCTCGATCCAG 59 43415833 43415853 GGCCATAGTACAAAGACACAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055491 ENSRNOT00000088826 2 1 1 60 11 49053542 49053560 AGATGGCAGAAAGGCTACG 60 49053500 49053524 CTAATAATTCAGATGTTCCCAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061362 ENSRNOT00000089659 2 1 1 60 2 201142203 201142221 GAGACTTGGACAGCTCAGG 60 201142161 201142181 ATGTATAGGAAAGCTGGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060579 ENSRNOT00000077684 1 1 1 60 11 85813958 85813978 TCCATTCCTAGAGGCATTGAG 59 85813998 85814018 GTCAGAACACTGAGCATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052855 ENSRNOT00000082777 1 1 1 60 16 24160783 24160804 TGATTCAGTAGGTGGCATAGAG 60 24160822 24160843 TTACAGTTCAGAGCACTAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061090 ENSRNOT00000086129 2 1 1 61 16 73531250 73531268 CTGTGTCACATGTGCACAG 60 73531292 73531311 ACTGAGCATAGACATAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060900 ENSRNOT00000089992 1 1 1 60 X 152800988 152801010 CTGTCATATCTGGTACCTTACTG 58 152801028 152801048 ATTTAGCCACCTAGATCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135294.1 ENSRNOG00000053696 ENSRNOT00000079637 1 1 1 60 3 101047272 101047291 CTATTGTGAAGCCCTAGGCA 60 101047231 101047250 CATTCCTGAAGGAGGAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060954 ENSRNOT00000091276 1 1 1 60 8 17692153 17692171 TTCAAGCAGACGCCTAGAG 60 17692111 17692131 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053522 ENSRNOT00000082517 2 1 1 80 15 39573383 39573401 CACCACTGGATAGTTGCCT 59 39571064 39573339 CTGATTTCCCTGGTACCCA 59 Novel Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000077601 2 1 2 80 1 238375821 238376712 CACGATGAACTTTAAGGAAGC 58 238375761 238375780 CTCAGGAATCTGATGAGGTG 58 Novel Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000076785 2 1 2 83 1 238413391 238435099 TTGAAGTTCTCAAGGAAGCA 57 238413327 238413346 ATGCAAACCACTTCTTTCCT 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000057474 ENSRNOT00000081241 3 1 1 77 16 73461214 73461233 CAATGAGGTTTATCCGAGGC 59 73461156 73461174 AATTACATCGCTGTCCCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056848 ENSRNOT00000089826 2 1 1 60 8 62079086 62079106 GCAACCAAATTTAGCCATCAC 59 62079046 62079065 CATGAACAGTGAAGGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057236 ENSRNOT00000088634 1 1 1 60 8 36678275 36678296 CCAAATGTTGGAAACTTGACTG 59 36678316 36678335 GGTAACATGAATGCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057236 ENSRNOT00000088634 2 1 1 60 8 36678180 36678198 CCTAGCAAGGGAGATACCC 59 36678222 36678240 TAAAGGAACCTTGCCCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.1 ENSRNOG00000051568 ENSRNOT00000079345 2 1 1 60 1 155954913 155954934 CGAACAGAAGATAGAAGAAGCC 59 155954874 155954893 AAGAACGAGAGTCTTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060581 ENSRNOT00000084808 1 1 1 60 17 21251929 21251950 AGAAGGGTACAGAGAAGATCAG 59 21251890 21251908 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058756 ENSRNOT00000079881 1 1 1 60 17 20263034 20263054 TAGGAGGAAGTACACTGAAGC 59 20263073 20263094 GACCTTATGCTGTATTTGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059165 ENSRNOT00000081287 1 1 1 60 17 20063404 20063426 CGATACAGAGAAGATTAGCATGG 59 20063366 20063384 ACACTTCGTGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057411 ENSRNOT00000081030 2 1 1 60 1 169806023 169806042 CTTCACTGTGGCAATATCGT 58 169806062 169806083 CCAGTTAGCAATAATCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061284 ENSRNOT00000079519 2 1 1 60 4 176264352 176264372 CAACTGATGTGGTTAAGTGGG 59 176264312 176264330 TGAAACTAAGGCACCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068306.1 ENSRNOG00000036543 ENSRNOT00000054650 3 1 1 61 9 97384950 97384973 CTACTGTTAGGAATCGTAATGCAG 60 97384912 97384930 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 2 1 1 60 6 105867460 105867479 AGCCATACCATTCTAACAGC 58 105867502 105867520 TACTGACAAGGTCTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056178 ENSRNOT00000085819 1 1 1 60 6 74466492 74466510 TTCAAGCAGACGCCTAGAG 60 74466532 74466552 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038021.1 ENSRNOG00000056631 ENSRNOT00000086120 2 1 1 80 X 37346196 37347014 TTCTCATTCCAGAGCTCCA 58 37346134 37346153 CCCTTTCCATTTCTGTGTCC 59 Novel Rattus norvegicus 81 AABR07002353.2 ENSRNOG00000053141 ENSRNOT00000082460 2 1 1 60 1 71924349 71924369 CTCGTGAAACCTTTCTTAGCC 59 71924309 71924327 CAAATCTCCAGTGGTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060084 ENSRNOT00000091563 2 1 1 60 4 56512039 56512057 ACAATCCCGTCAGTAGGTG 59 56512079 56512099 CTCATAGGTGAGAACAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000054868 ENSRNOT00000089157 2 1 1 60 X 37279678 37279696 CAGAGGAAATCCAGACGGG 60 37279636 37279656 TGGCAGAGTTGTAGAGATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052285 ENSRNOT00000089539 2 1 1 60 6 21707449 21707467 GTCCTTTGTTCGTCCTAGC 58 21707407 21707425 TCCTTGGCATAAGACAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000007671 1 2 4 80 7 115865022 115865134 GTGCCTCTTGAACATCCTC 58 115864960 115864979 CCTACGATGACCAGTATGAC 57 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000076775 2 2 4 94 7 115874080 115874352 ATAACTCAAAGACAGGGTGC 58 115874005 115874023 TTTGGAAGGGAAACAGAGC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054805 ENSRNOT00000078611 3 1 1 61 X 132996426 132996444 GGTCTAGTTTCACCAGCAC 58 132996383 132996403 GGGCCATGTTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057524 ENSRNOT00000084572 3 1 1 60 2 184860111 184860130 TGCTAACCACTGTGATTTCC 58 184860152 184860171 CCCACTACCACAAATTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055110 ENSRNOT00000078590 2 1 1 60 2 147058288 147058309 TGGGTACTAAGTCATTTGTGAG 58 147058329 147058348 TGAGCTTAGCTATTGCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.2 ENSRNOG00000055449 ENSRNOT00000089603 3 1 1 60 3 102703751 102703772 GGCTGCTTTACACAGATATTCC 60 102703792 102703811 CAAGGGTTACCATCTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059410 ENSRNOT00000091516 3 1 1 60 9 74256119 74256141 GTTGTATCATATGTGTAGGTGGC 59 74256158 74256179 TCAGAACAGTGATTGAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053606 ENSRNOT00000081699 2 1 1 60 9 94908385 94908403 CTGTCATGGGCAGAAACAG 59 94908424 94908445 TGTTAGGGAAGACAGAAAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016310.1 ENSRNOG00000048867 ENSRNOT00000074692 1 1 1 89 14 96499569 96499587 CACAATTGCTCAACAGCCT 59 96499640 96501016 TTGAAGAGCTCACCGAGAG 59 Novel InUTR Rattus norvegicus 81 AABR07061036.1 ENSRNOG00000053228 ENSRNOT00000090283 2 1 1 80 4 103024461 103024806 TTGGATTCCAGCTTCCAGG 60 103024399 103024419 GAAGCTTGATCTCCAAGTGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055016 ENSRNOT00000086386 1 1 1 60 9 15830755 15830775 GTCATGATATAGGGACATGGC 58 15830715 15830738 CGGACCACTCCATAAATTTATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000051540 ENSRNOT00000091290 1 1 1 60 17 90065327 90065347 CCTCTCATAATGTCGCATGTC 59 90065287 90065305 CACAGAGGCTATGCATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055073 ENSRNOT00000080392 3 1 1 61 17 42568507 42568527 CTTTGGCTGTGTAACATACTG 57 42568549 42568568 ATCACCTTTGTGCATGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051879 ENSRNOT00000077140 2 1 1 60 9 3981611 3981631 ATTCTGAAATTGGACCGACAC 59 3981652 3981671 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000248.1 ENSRNOG00000051844 ENSRNOT00000091348 2 1 1 80 1 6279515 6279537 TATGGCCACTTGATAGAGGG 59 6279452 6279470 TGACCTCCAGTTGAACCAG 59 Novel Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 1 1 1 60 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711746 86711765 TCCAGCTCCTGTCATTTACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068612.1 ENSRNOG00000048984 ENSRNOT00000073084 1 1 1 60 9 112127764 112127782 GAGGGAAAGTTGGAGATGG 58 112127801 112127824 GGATTAGTGTCGTTATAGAAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059902 ENSRNOT00000084135 2 1 1 60 16 49064580 49064598 AGGGTAAAGGAAGTCTCCA 57 49064538 49064557 CAGGATCCAAAGAGGAAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058181 ENSRNOT00000088150 2 1 1 60 15 84876532 84876550 ACATGTGCATCAGTAGGTG 58 84876568 84876592 ATAGGTCAGAACACTGAGTATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017745.3 ENSRNOG00000054569 ENSRNOT00000087199 3 1 1 105 15 30550240 30550364 CCTACTCGGAAGGACTCAC 59 30550433 30550451 GCGTGTGGCTGAATAAGTG 60 Novel Rattus norvegicus 81 SNORA63 ENSRNOG00000061340 ENSRNOT00000078726 3 1 1 60 16 9730864 9730885 TTAAAGCATTACTACCTCTGCC 58 9730825 9730844 TTTGAAGCCAAGCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.2 ENSRNOG00000052460 ENSRNOT00000086184 2 1 1 61 1 158913079 158913099 CAGCATTTGCTGTCACCTG 60 158913036 158913055 TGAGATTTCACCTCACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC128353.1 ENSRNOG00000046711 ENSRNOT00000073444 1 1 1 80 13 37512661 37512683 AGATTTCACCTCACATGCG 58 37512726 37512745 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AC128353.1 ENSRNOG00000046711 ENSRNOT00000073444 2 1 1 80 13 37512660 37512683 GAGATTTCACCTCACATGCG 59 37512725 37512744 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07025476.1 ENSRNOG00000046180 ENSRNOT00000075699 1 1 1 77 16 38805345 38805363 AGCAATGAATGCTTCAGGA 57 38805286 38805306 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD59 ENSRNOG00000057249 ENSRNOT00000089900 3 1 1 61 7 2506335 2506358 CTTCCTTGATGATTAGCTTCTGAC 60 2506378 2506396 GAATGGCATCTGGCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054789 ENSRNOT00000087705 2 1 1 60 3 12600244 12600264 ACAGTCCTTTATTCATCCCAG 58 12600204 12600223 TAGGCATAAGACAGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 1 1 1 86 10 101989785 101989806 GTTCTTACCCAGGACCCAG 59 101989858 101989876 ATTCCAGAGCCTTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051820 ENSRNOT00000081404 3 1 1 60 X 43276852 43276875 CTTCAAGTATAGCTTCTCTGTCAC 59 43276815 43276835 ACATAGCCTCTTTCCTCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053333 ENSRNOT00000092038 3 1 1 60 17 24046674 24046695 ATACAGAGAAGATTAGCATGGC 58 24046635 24046655 GGACTAGTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055274 ENSRNOT00000085486 2 1 1 60 6 107753317 107753335 TGGTTACTGTGTCACATGG 57 107753275 107753293 AGCACAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052857 ENSRNOT00000085672 3 1 1 98 16 11921143 11921161 TAGAGCAGGTACAGCATGG 59 11921222 11921241 CTTACCCTACAGGTGGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058792 ENSRNOT00000088641 3 1 1 60 X 71442976 71442997 AGAAGGATAAAGGAAGTCTCCA 58 71443018 71443036 GATCCAAAGAGGAAGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052584 ENSRNOT00000083689 2 1 1 60 16 89613404 89613423 AAATTGGAAAGATGCAGGGA 58 89613363 89613385 GTACTATTGGTGTCATCCTTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055256 ENSRNOT00000082249 2 1 1 60 X 76845053 76845071 TAAGAGATGGGACAGGAGC 58 76845094 76845113 GGAACTGAAATACCAGGTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056232 ENSRNOT00000077947 2 1 1 60 17 9764770 9764792 GATACAGAGAAGATTAGCATGGC 59 9764732 9764750 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056995 ENSRNOT00000085198 1 1 1 60 11 14519041 14519060 TGTGACTACTGTGTCATGTG 58 14519000 14519023 CATAGATATAGCTTCTGTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909704 ENSRNOG00000049596 ENSRNOT00000076262 2 1 1 80 1 271337121 271338016 TAGACCAGGTCATCAGTGAG 58 271338059 271338077 TCTCATAGAGCAAGGCCAG 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000048993 ENSRNOT00000075536 2 1 1 60 2 78170383 78170401 ACCAGGTTGTCTAAGGAGG 58 78170420 78170443 GGATATCCTTGAACTTCTGTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037203.1 ENSRNOG00000028611 ENSRNOT00000031767 3 1 1 60 X 15949941 15949961 AGCAACAAAGCTCCTATAACC 58 15949901 15949920 CTGCTGTTGTACTGGTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA12 ENSRNOG00000052607 ENSRNOT00000085928 1 1 1 60 1 263890774 263890792 GTTCAAATGGGCCTGACTC 59 263890732 263890750 TGTCTCTAAGCCTTTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058759 ENSRNOT00000089679 2 1 1 60 16 13644472 13644492 TGTTACAGGTATCAGATGTGC 58 13644513 13644532 GAGCATGACATAGGCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109427.1 ENSRNOG00000056259 ENSRNOT00000082987 1 1 1 60 9 100885054 100885072 GTTCCTTTCCCTGTTGCTG 59 100885095 100885114 CTAGGAGAAAGACCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055069 ENSRNOT00000088754 3 1 1 60 X 110858402 110858420 CCCTATAGAGGCAGAGCAC 59 110858360 110858381 CTATCAGGGAGTACAGCTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066739.1 ENSRNOG00000061824 ENSRNOT00000080626 3 1 1 106 9 13846891 13846909 CATTGTGGGTAGTCAGCCT 59 13846979 13846997 TACGACTTGTGCGTACTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003302.1 ENSRNOG00000058668 ENSRNOT00000090142 1 1 1 122 1 104052102 104052121 GGAAAGCTACAGGGATAGGG 59 104051999 104052017 TTGTTAGCACAGGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 3 1 1 60 1 189345549 189345567 CCTAGATGACTGGACAGGA 58 189345507 189345525 TCTAAGCTCTGGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000051707 ENSRNOT00000082211 3 1 1 64 8 13867333 13867351 GACAAAGGCAGGTTGACAG 59 13867378 13867397 CTGAACAATGAGTTCTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054307 ENSRNOT00000088781 2 1 1 60 10 15748245 15748263 GTTATAATGCGCTATGCCG 57 15748203 15748222 AAGGTCACCATATTGATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061671 ENSRNOT00000089838 1 1 1 60 10 68008217 68008236 TCGAGGTACTTTAAGAGGCA 58 68008176 68008195 GATCCAAAGAGAAGGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000058445 ENSRNOT00000083773 1 1 1 60 8 117588482 117588503 CAAGAAAGTCTCACCTATTCCA 58 117588443 117588464 GATCCTATATGACAGCTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056543 ENSRNOT00000090722 2 1 1 60 10 67489762 67489780 CTGCTTAGCTGTGTCTGTC 58 67489803 67489822 ACACTGAGTGCAGAAATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041970 ENSRNOT00000063723 3 1 1 62 1 270635198 270635216 GAATGCACCCAATCTTGTC 57 270635240 270635260 TTTAAGTACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055435 ENSRNOT00000080739 2 1 1 60 1 218731021 218731041 TTACTTCAGCAGCATACACAG 59 218731061 218731081 AGGGACCCTACTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071000.1 ENSRNOG00000051416 ENSRNOT00000047078 3 1 1 60 8 95943998 95944019 TAACTATGGGACAGCTTTACGA 59 95944039 95944058 TAGGCCACATACAAGAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058958 ENSRNOT00000091138 1 1 1 60 10 31643321 31643344 ACGATACAGAGAAGATTAGAGTGG 60 31643284 31643302 AGGCTTCATGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055217 ENSRNOT00000087732 1 1 1 66 6 42853853 42853872 ATTTATGACAGGCTCATCCC 58 42853901 42853919 GTTAGGAGCCAGTTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056743 ENSRNOT00000087879 1 1 1 68 2 207073722 207073743 GCAGCACATATGGTTAAATTCG 59 207073675 207073693 TTGTGTCATCCTTGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057348 ENSRNOT00000089741 2 1 1 60 16 18469764 18469782 GGGAGATAGGTGCCATGAC 60 18469806 18469824 GAGTGCAGGAACTAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057142 ENSRNOT00000088007 1 1 1 60 4 86869154 86869172 GTATCAGTAGGTGGCCGAG 59 86869112 86869132 TTCATAGGTCAGAACACTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057142 ENSRNOT00000088007 3 1 1 60 4 86869157 86869175 TGTGTATCAGTAGGTGGCC 59 86869115 86869133 ATAGGTCAGAACACTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056646 ENSRNOT00000090634 3 1 1 64 2 26671224 26671243 ATAAACCTGGCTTGACACAG 58 26671179 26671197 TTCAATTGGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.1 ENSRNOG00000045403 ENSRNOT00000070670 1 1 1 60 2 2478736 2478754 ATAGCTGGTTGGCATTCTG 58 2478694 2478718 CATCCTGGTATAGTTAACAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 1 1 1 72 17 43779502 43779520 GAGACAACAAGAAGACGCG 59 43779557 43779575 TTGTTGAGCTCCTCATCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 2 1 1 73 17 43779501 43779519 AGAGACAACAAGAAGACGC 58 43779557 43779575 TTGTTGAGCTCCTCATCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC121203.1 ENSRNOG00000054410 ENSRNOT00000091642 2 1 1 60 3 102588546 102588565 CTCATCAAAGGCACTATCCA 57 102588505 102588525 TACAAAGTACAGCAGAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051527 ENSRNOT00000091483 1 1 1 60 4 130896933 130896954 ATACAGAGGAAGATTAGCATGG 58 130896894 130896912 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit2 ENSRNOG00000036604 ENSRNOT00000054757 1 1 1 80 1 252894866 252897539 CAGCAGTCATGAGTACAGC 58 252897583 252897601 TCAGGTTCCAGGTGAAGTG 59 Novel InUTR Rattus norvegicus 81 Ifit3 ENSRNOG00000022839 ENSRNOT00000031025 1 1 1 80 1 252906325 252906343 TTTCTGAACTGTTCAGCCC 58 252906387 252909509 CTCCTTGTTGACCTCACTC 58 Novel InUTR Rattus norvegicus 81 U1 ENSRNOG00000055945 ENSRNOT00000089465 1 1 1 60 4 182604749 182604769 CAGGGAGGTTCTATGATCAGG 60 182604709 182604730 TCCAAGTGACATGAATAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054654 ENSRNOT00000083454 3 1 1 65 9 69810245 69810264 TCTTCTAGTCTCCAGCAGAG 58 69810290 69810310 GATGGTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052588 ENSRNOT00000078490 1 1 1 60 10 7630992 7631010 GAGAAGATTAGCATGGCCC 58 7630950 7630968 AAGATGGAACGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058757 ENSRNOT00000077951 2 1 1 60 4 125335507 125335526 TGACTGCTGTGTTACATGTG 59 125335466 125335484 ACTGAGTGCAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053414 ENSRNOT00000089256 3 1 1 60 4 168916190 168916208 CTGTTGTCATTTGCACCAG 58 168916229 168916250 AACACTGAGGATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058233.1 ENSRNOG00000061389 ENSRNOT00000088254 1 1 1 80 7 105814717 105814739 AGATTTCACCTCACATGCG 58 105814782 105814801 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 Cyss ENSRNOG00000030857 ENSRNOT00000044345 3 1 1 80 3 144428559 144428579 TATGTTTGAAGACACAGGGTG 58 144427498 144428518 AAGAGCAGAATTCATGCTCC 58 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 3 1 1 65 1 165559995 165560013 AAAGTCAGCAGCTCAAGGA 59 165559946 165559966 GTAGGTCCTCTTCCCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052874 ENSRNOT00000089848 1 1 1 60 2 3008178 3008197 GTCACATGTGCATCAGTAGG 59 3008137 3008158 CAGAACACTGAACATAGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055824 ENSRNOT00000091726 3 1 1 66 1 62062238 62062259 GCAGCACATATACTAAGATTGG 57 62062193 62062211 GTGTCATGCTTGTTCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060964 ENSRNOT00000082389 1 1 1 71 2 189956147 189956165 ATGAGGCTCATTCTGTGCT 59 189956094 189956113 ACAACACAATTATGCAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057581 ENSRNOT00000088692 1 1 1 60 17 27281030 27281051 CTCACTTTAGCAGCACATACAC 60 27281070 27281090 AAGAGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690863 ENSRNOG00000057644 ENSRNOT00000078311 2 1 1 138 X 64034782 64034802 AGAACTAGAAGTGGTGAACCT 59 64034590 64034682 ATGGCCAAGTTTCATTGGA 58 Novel Rattus norvegicus 81 AC104053.1 ENSRNOG00000057738 ENSRNOT00000082062 1 1 1 80 18 53051750 53051970 TCGGGACCACAGAAATAGC 60 53052015 53052033 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058079 ENSRNOT00000087691 1 1 1 63 2 189938518 189938536 GATACAGAGGAGACCAGCG 59 189938560 189938581 GGTGACCATTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056165 ENSRNOT00000089183 3 1 1 60 2 210199376 210199397 CTGTTACATCATTGATTGCCAG 58 210199337 210199355 GGGATACTCGACTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000082903 3 1 2 80 1 48321220 48321238 ATACCAGCAACAGCAACAG 59 48321280 48321931 TGACTGCTACTGTTTCATTGC 59 Novel Rattus norvegicus 81 AC105811.1 ENSRNOG00000052254 ENSRNOT00000084618 3 1 1 61 3 123810472 123810492 CAGTGTATAGAATGGTTGCCT 58 123810431 123810449 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0663.2 ENSRNOG00000051216 ENSRNOT00000076358 2 1 1 60 X 65367912 65367930 TGCTTATCAGCTCCAGGTC 59 65367951 65367972 TAAGCACTCATATGAAGACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111319.3 ENSRNOG00000059489 ENSRNOT00000088343 2 1 1 104 9 71296252 71296272 CTGTATTACTCCAGCACTCAC 58 71296342 71296363 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 2 1 1 75 14 99672248 99672270 TATTAGCCATTCTGACTGGTG 58 99672306 99672325 ACATCCTTACTCATCAGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000055511 ENSRNOT00000088008 3 1 1 60 14 60986980 60986999 GCAGACCCTTATACTAGCCG 60 60986939 60986957 GTATGCAGCTGTTGCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.1 ENSRNOG00000018612 ENSRNOT00000025109 3 1 1 89 1 167918166 167918186 CACCACTCCTACTGTCACC 59 167918095 167918114 AGAGATCATGGCAGTCAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052288 ENSRNOT00000087816 3 1 1 61 14 43689396 43689417 CTAGAATTGGAACCATCCTGAG 58 43689437 43689457 TATTTGCATGGCTTCCTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fendrr ENSRNOG00000051160 ENSRNOT00000076265 1 1 1 83 19 52996949 52996967 CTAAAGGAAGAGGCCTGGG 60 52995547 52995565 GTGTGGGAAATGGAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006160.1 ENSRNOG00000017884 ENSRNOT00000024056 2 1 1 60 1 223549222 223549240 ACGGACAGTTAAAGTCCCT 58 223549180 223549198 TTGTTATCCAAGCGTAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054362.1 ENSRNOG00000050899 ENSRNOT00000043950 2 1 1 82 3 149960931 149960953 TACAGAAGGAGTGCTGTGC 60 149960867 149960886 CCTCTAAACTGGAACTCCGT 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058610 ENSRNOT00000091228 1 1 1 60 2 101977087 101977106 TCAGTTCATGGAAACCTCTC 57 101977128 101977147 CTCAGCCAATTTCAATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061226 ENSRNOT00000079052 1 1 1 60 2 93815207 93815225 GTGCTTTCTTCAGCAACAC 58 93815248 93815267 GGCCATGTTACTGTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055359 ENSRNOT00000080014 3 1 1 60 2 190324608 190324631 CTGTTGTTCTTATATCAGTCAGGG 59 190324647 190324668 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052508.1 ENSRNOG00000061770 ENSRNOT00000088345 3 1 1 98 3 58380159 58380177 AAGCTCAAGCAGCAATCAG 59 58380239 58380258 GACCTGGGATTCTGGACAC 60 Novel Rattus norvegicus 81 AABR07069969.1 ENSRNOG00000058583 ENSRNOT00000072787 2 1 1 65 8 43144309 43144333 CATGTCTTACCAGATTTACAGTTCC 60 43144266 43144284 ACTGATGCACAGAACACAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061566 ENSRNOT00000086649 3 1 1 60 14 26311812 26311836 CACTAGAGGATTACACATATGACTG 59 26311852 26311872 TCTACTCTTTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060533 ENSRNOT00000086638 3 1 1 60 14 27392175 27392197 GACAGAGGTTATATCTACGACGA 59 27392211 27392235 CCCTTCATTCAGTTATTGATAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051865 ENSRNOT00000085969 3 1 1 60 2 148386107 148386125 GTCAGAAAGCTGGAGATGC 59 148386065 148386085 AACTTACCTATCCACTGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000059451 ENSRNOT00000087326 1 1 1 70 1 194988864 194988883 CCAGTCAAACATTCCTTGGA 58 194988813 194988831 ATTTCCGATGACAGTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052432 ENSRNOT00000090900 3 1 1 60 14 111469591 111469612 AAGGCTATGTCTATGTTCAGTG 58 111469552 111469571 TGTTTGGCTGCTAATCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.1 ENSRNOG00000051446 ENSRNOT00000089630 1 1 1 80 7 142884370 142884820 TAAGCATGTAAGTCGGGTCC 60 142884862 142884881 ACCAGATTGTCCAAAGACCA 59 Novel Rattus norvegicus 81 AABR07061707.1 ENSRNOG00000052718 ENSRNOT00000079266 1 1 1 60 4 140503343 140503363 GTGGACCAAAGCTTATTACCT 58 140503303 140503321 AAGATGATGAAGTGGACCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000054612 ENSRNOT00000084408 2 1 1 60 3 4094164 4094184 GTCACATTTGTGTCAGTAGGT 58 4094124 4094142 CAGAACACTGAGCGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054119.1 ENSRNOG00000056902 ENSRNOT00000081089 1 1 1 60 3 142094380 142094401 TGGGTAAGGTCTAAGAATTTGC 59 142094420 142094440 ATAAGTAGCTTCAGCATCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057675.1 ENSRNOG00000054487 ENSRNOT00000088893 3 1 1 60 7 83682336 83701146 CTGCAAAGGAAACGATGGA 59 83682294 83682312 AAGACTTCATGGGCTGAGG 59 Novel DesignRelaxed Rattus norvegicus 81 Pramef20 ENSRNOG00000053942 ENSRNOT00000091592 2 1 1 86 5 162407718 162407736 TTAAGCTGGAAAGCCTCCA 59 162407786 162410506 TCTTCACAGACCCAAGCAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059477 ENSRNOT00000081659 1 1 1 60 17 72214163 72214181 CAGTAGGTGGATGAGAGGG 59 72214202 72214223 AGATGTCCATAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 2 1 1 65 5 168845244 168845304 GCTGAAATCACCATCTTTGGA 59 168845331 168845349 CATAGCTCTTTGGACTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 SCARNA4 ENSRNOG00000052086 ENSRNOT00000077866 2 1 1 60 3 129328783 129328803 AAGACTTTGCTGATACACTCC 58 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054586 ENSRNOT00000091998 1 1 1 60 14 7051626 7051644 CGAAGAGGATGACCTTCCC 60 7051667 7051686 TACTCGTATACCCTTGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054586 ENSRNOT00000091998 3 1 1 60 14 7051625 7051643 TCGAAGAGGATGACCTTCC 59 7051667 7051685 ACTCGTATACCCTTGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048387 ENSRNOT00000074592 3 1 1 60 17 53916413 53916431 AGCTACGTAGGATCAAGCC 59 53916451 53916473 ACCAGATATTCACTGGTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096804.1 ENSRNOG00000041549 ENSRNOT00000063302 2 1 1 60 17 80895534 80895552 TTTGCCTATCTGCCTTGTG 58 80895576 80895594 AGCTGTGAATGGAAGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004101.1 ENSRNOG00000049002 ENSRNOT00000071114 3 1 1 66 1 125082651 125082669 TTATGACTTGCTCCTCCGG 59 125082603 125082621 TGAATGCTCTAGGCGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034111.1 ENSRNOG00000060133 ENSRNOT00000086671 2 1 1 132 11 53503596 53503615 AACACAACCACAACAAAGCA 60 53503477 53503495 TTTGCTGTGCATTCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC128786.1 ENSRNOG00000050026 ENSRNOT00000071789 3 1 1 99 1 102284412 102284432 AGGTAGCAGCTAGAAGAAAGG 59 102284333 102284351 TCTAGAAGCTGCCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053266 ENSRNOT00000083648 2 1 1 61 3 171596235 171596254 GGACTCCAAATCAGAACGAC 59 171596278 171596296 TTTATGTCATCCTTGCGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097038.1 ENSRNOG00000059928 ENSRNOT00000081357 1 1 1 80 10 46183017 46183040 GTGATCAACTCTATCAGGACTC 58 46183084 46183103 GATGTTATTCTGTGGTGGCT 58 Novel Rattus norvegicus 81 AABR07056470.1 ENSRNOG00000058647 ENSRNOT00000078534 2 1 1 89 7 26440504 26457239 TGTGAAGACATACAATGCCC 58 26457288 26457309 GGGTTCATTGTCAGTATTCCAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052117 ENSRNOT00000086797 1 1 1 66 2 75154175 75154193 TTATCCATTGCACTCCGGA 59 75154223 75154241 TATGCAGTCCAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.14 ENSRNOG00000050488 ENSRNOT00000075299 3 1 1 60 1 121219423 121219442 AGAGATCTGATCAGTCAGGC 59 121219382 121219405 GGTTATACCTAGGACAGATAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060757 ENSRNOT00000080209 2 1 1 61 14 84034274 84034292 GAGAGGCTATGTCTACGCC 60 84034316 84034335 GCTAGGCCACTTAATCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004876.1 ENSRNOG00000018083 ENSRNOT00000024338 2 1 1 60 1 164807640 164807661 AGGTAAAGTTCATGGTTCTCTG 58 164807681 164807700 CATCTTGGGAGTCTGACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055158 ENSRNOT00000091183 3 1 1 86 1 84529973 84529994 GCAGCACATATACTAACATTGG 58 84529908 84529928 GGAAGGCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055664 ENSRNOT00000083486 1 1 1 60 14 75953620 75953641 TCACATGTGATTTGTAAGTGGC 60 75953660 75953680 GTCAGAACACTGACTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035957 ENSRNOT00000054080 1 1 1 60 1 199087168 199087186 CTCTGAAGCTAAGCAGGGT 59 199087209 199087228 GTATTCCCAGGTAGTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059051 ENSRNOT00000083185 1 1 1 60 1 257476008 257476028 ACAAAGCCCAGTTATACACAG 58 257476050 257476068 CTGCAATGGTTAGGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057948 ENSRNOT00000086874 2 1 1 64 1 200157736 200157754 GATCCCAGCAGTACATGCA 60 200157781 200157800 TTATCCTTGTACAGGGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057368 ENSRNOT00000078742 2 1 1 60 2 155475185 155475203 GGTGACAGAGATGACAGAG 57 155475143 155475163 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061110 ENSRNOT00000078781 1 1 1 60 2 27725948 27725969 ATACAGAGAAGATTAGCAAGGG 58 27725909 27725930 TCCTAACTTAATAAGCTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054583 ENSRNOT00000079025 1 1 1 60 2 155488501 155488519 AGAGGCTAGGTCTATGCTC 58 155488459 155488482 GTTAGGCTACTAATCATTCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030798.2 ENSRNOG00000057734 ENSRNOT00000077158 2 1 1 81 10 104920767 104920786 CACCATTTCCCTATTACCGC 59 104918381 104920723 CTCCCAGGACTTGAACCTG 60 Novel Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 3 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395935 CCAAACACCATGAAGAAGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015834.1 ENSRNOG00000048860 ENSRNOT00000075080 1 1 1 60 14 79200430 79200449 ATTAGTGATCAAGGGTGGGA 58 79200472 79200490 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015834.1 ENSRNOG00000048860 ENSRNOT00000075080 2 1 1 60 14 79200430 79200450 ATTAGTGATCAAGGGTGGGAG 59 79200472 79200490 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057242 ENSRNOT00000079970 3 1 1 60 1 58787414 58787436 GATACAGAGAAGATTAGCATGGC 59 58787456 58787474 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064048.1 ENSRNOG00000050810 ENSRNOT00000073963 3 1 1 82 6 62336615 62336635 ATCCCTGAAAGAATTCCAGGA 59 62336810 62336829 CGTGTTCTTTCTTGATTGCT 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 2 1 1 60 2 84566330 84566352 CTTCTTAACACGAAAGACAGTCC 60 84566368 84566390 AGATAGCAGTTAGATGGTGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 2 1 1 75 14 35163206 35163227 GCAGCATATACACTACGATTGG 59 35163263 35163281 TAAATTTGCATGCCCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017236.1 ENSRNOG00000057837 ENSRNOT00000092092 1 1 1 80 15 18941506 18941526 GACACAAGTGCTATGCTACAG 59 18941566 18949307 TGTGTTCTTTGCATACCTTCG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055219 ENSRNOT00000089621 1 1 1 60 1 90959690 90959710 AGACAAGCTATGGATAGTCCC 59 90959650 90959668 TACACATGCCCACATAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056767.1 ENSRNOG00000058819 ENSRNOT00000088769 1 1 1 80 7 40405588 40405610 AGATTTCACCTCACATGCG 58 40405653 40405672 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061103 ENSRNOT00000089096 2 1 1 60 4 114258267 114258285 GTAGACAAGCTACTGTGCC 58 114258225 114258245 TGAGTGTAAACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm5d ENSRNOG00000060496 ENSRNOT00000086056 1 1 1 80 Y 573366 573384 GGTCTTGTCTGCCTTTCTC 58 573428 573524 CAATGTGTACCTGTACCGT 57 Novel Rattus norvegicus 81 AC240408.1 ENSRNOG00000060553 ENSRNOT00000083719 2 1 1 62 Y 1590139 1590157 CAAGAAGTTAGACCGCAGG 58 1590093 1590113 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000060428 ENSRNOT00000092221 3 1 1 80 2 4843189 4843210 CCAATGAAGTTTATCTGAGGCA 59 4843251 4843269 TTTGAGAAGATCCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 2 1 1 60 1 84797475 84797494 GCTCTGTTGTAGAGGATGAC 58 84797434 84797452 ATACCCTTGACCGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054684 ENSRNOT00000084972 3 1 1 60 5 91360494 91360512 GTGTCAGTAGGTGGCAGAG 60 91360535 91360554 GTTCAAGGATCAGAACGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067760.1 ENSRNOG00000051624 ENSRNOT00000082300 3 1 1 87 9 61692309 61694020 GAAAGGAAAGGGTGGAGAG 58 61694071 61694089 TACTACTTTGGTGCCTCCA 58 Novel Rattus norvegicus 81 AABR07052559.1 ENSRNOG00000053144 ENSRNOT00000086887 1 1 1 60 3 61635908 61635926 CCTCAGAACTCCAAGTCCA 59 61635866 61635885 GGCTCAAACACTTGATGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000058995 ENSRNOT00000082932 1 1 1 60 2 2478791 2478811 CTACCTAGGTTTCCTTGTACC 57 2478751 2478769 CTATTGGCTGCTGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005633.1 ENSRNOG00000055297 ENSRNOT00000084934 2 1 1 60 1 190671981 190671999 TTCCTGGACGAGAACTCTG 59 190672023 190672041 GAGTTCTAGGTTGCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024877.1 ENSRNOG00000058038 ENSRNOT00000083254 1 1 1 80 16 20640689 20640707 CATCACTCTGCATCCATCC 58 20639812 20640285 CTGTCAGCTTTCTTCTCACC 59 Novel Rattus norvegicus 81 AABR07041451.1 ENSRNOG00000051727 ENSRNOT00000085657 3 1 1 77 X 130618107 130618125 TCTTTCTCCACATCCTCGC 60 130618167 130618186 GATTTCACCTCACACCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000046938 ENSRNOT00000075492 2 1 1 60 14 91220556 91220576 TCAGAAGCTATACAGGGTCAG 59 91220597 91220616 AATGACGCCTCTTCTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056353 ENSRNOT00000082195 1 1 1 60 1 88671687 88671705 GAGAAGATTAGCATGGCCC 58 88671645 88671663 AATATGCAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056353 ENSRNOT00000082195 2 1 1 60 1 88671690 88671712 CGATACAGAGAAGATTAGCATGG 59 88671652 88671670 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054691 ENSRNOT00000088249 3 1 1 85 14 48886934 48886952 TCCTGGCAAAGAACATGTC 58 48886867 48886887 CCACTACCACAAATTATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280,ENSRNOT00000072059,ENSRNOT00000076044 2 4 4 80 5 171673917 171680072 CCATACAGGTGCAAGTACTG 58 171673856 171673876 TTTGTTGTGGATGTTCCTCAC 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280,ENSRNOT00000072059,ENSRNOT00000076044 3 4 4 80 5 171690750 171690768 AAGACCTTTGCCACATCCT 59 171687438 171690708 GCAGACCTCACATATGAATGG 59 Novel Rattus norvegicus 81 AABR07014804.1 ENSRNOG00000024829 ENSRNOT00000039626 3 1 1 60 14 32258094 32258114 TGCTTCCTGGAATACTAAGTC 57 32258135 32258154 GCTAACTTTCTAAGGCTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057890 ENSRNOT00000087419 1 1 1 78 1 27723226 27723244 ATGAGGTTTATCCGAGGCG 60 27723285 27723304 TGATTATTGTCCAAGGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057537 ENSRNOT00000092149 1 1 1 60 14 86882094 86882112 CAAACTCTGCTGCTCATGG 59 86882052 86882072 ACCAAACTTATCCCTAGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044838 ENSRNOT00000070105 1 1 1 60 10 27204908 27204932 GCTGATATCATCTGATCTTGAAAGG 60 27204872 27204893 TCCAATTCAAGTACAAACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003264.1 ENSRNOG00000058252 ENSRNOT00000080576 3 1 1 72 1 103053079 103053097 CATGGGCACATTTCCAGAG 59 103053633 103053651 CTTGTTCTCCCGAACAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000035103 ENSRNOT00000053226 3 1 1 60 12 42025734 42025752 CCCGATCTTGTCTGATCTC 57 42025692 42025712 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053173 ENSRNOT00000091876 3 1 1 60 14 33899773 33899794 ATACAGAGAAGATTAGCATGGC 58 33899734 33899753 TGGAAGCTTCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060445 ENSRNOT00000086699 3 1 1 67 6 75620197 75620215 TTATCCATTGCACTCCGGA 59 75620148 75620166 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002870.1 ENSRNOG00000051494 ENSRNOT00000089385 1 1 1 94 1 87734826 87734844 AGCTGTTCTCCTTGTTGGA 59 87732167 87734773 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 SNORA44 ENSRNOG00000053569 ENSRNOT00000079288 3 1 1 61 10 47586477 47586495 AGAGACTTTGACAGCCCAG 59 47586518 47586538 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056513 ENSRNOT00000091585 2 1 1 60 2 128817935 128817953 GATGAAGAACGCAGCTAGC 59 128817976 128817995 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053504.1 ENSRNOG00000031161 ENSRNOT00000043677 1 1 1 60 3 111299055 111299075 ATTGAGCAGAGACAAAGACAG 58 111299095 111299115 GACATCTGAATGGCTCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kmt2b ENSRNOG00000055525 ENSRNOT00000080842 2 1 1 80 1 89034201 89034683 CTCTATGAGAAAGGGAACTACTG 58 89034143 89034161 ACACTGCATCATCTTGCTC 58 Novel Rattus norvegicus 81 Rn60_X_0739.1 ENSRNOG00000051360 ENSRNOT00000076498 1 1 1 80 X 73005122 73005140 TTCCTCCAAGAAGGGATGG 59 73005572 73008818 CATTGCTAAGGTGAGCTCC 58 Novel Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 1 1 1 61 19 426227 427418 GAGATCCAAGAACAACAGGG 58 427436 427460 CCAGGTCTTCATAATATGGATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017604.1 ENSRNOG00000054270 ENSRNOT00000085162 1 1 1 78 15 29157491 29157509 TTCACTAGTGCTCCTGTGG 59 29157738 29157756 AATGAGGGATTCTGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035260.1 ENSRNOG00000047251 ENSRNOT00000074111 3 1 1 60 12 8874005 8874025 CTGAACTCAGAGATTTGCCTG 59 8873965 8873984 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014524.1 ENSRNOG00000055589 ENSRNOT00000079822 2 1 1 80 14 19281748 19281768 GCAAACAGCATTTGTTGGAC 59 19281813 19281832 GTCATCTTCTGAAGAGGCGT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055303 ENSRNOT00000084489 1 1 1 60 3 103099597 103099617 GACATTGTAGATGTGGTTGCT 59 103099638 103099657 ATACTCTCCTTTCTGCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.6 ENSRNOG00000059778 ENSRNOT00000088305 1 1 1 80 15 30841196 30841386 AGATTTGCTGGGTGAGAGG 59 30841429 30841448 TCAGAACAGAACTGGTTCCC 60 Novel Rattus norvegicus 81 AABR07017825.6 ENSRNOG00000061036 ENSRNOT00000089506 1 1 1 80 15 31447027 31447216 GATTTGCTGGGTGAGAGGA 59 31447258 31447278 CTCAGAGAAGAATTGGTTCCC 58 Novel Rattus norvegicus 81 AABR07013073.1 ENSRNOG00000048332 ENSRNOT00000073342 1 1 1 60 2 221659041 221659062 CAGTTTCTTTGGGACACTTCTC 60 221659083 221659101 AGACTCATCCCAAAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013073.1 ENSRNOG00000048332 ENSRNOT00000073342 2 1 1 60 2 221659043 221659063 GTTTCTTTGGGACACTTCTCC 59 221659085 221659103 TGAGACTCATCCCAAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049760.1 ENSRNOG00000044644 ENSRNOT00000069911 2 1 1 63 5 136425932 136425951 TTGTGTTAGTGTGGATGGTG 58 136425977 136425995 TTGTGCTCTGCTTATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056695 ENSRNOT00000081071 2 1 1 60 1 228358059 228358078 AAAGAGACTACGGTTCATGC 58 228358018 228358036 AAGCTGTGCATTGTTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686683 ENSRNOG00000049888 ENSRNOT00000075650 1 1 1 60 3 76186398 76186417 GCACACTCCTTATCATCCTC 58 76186357 76186376 CGCATCTTCAGAATTGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686683 ENSRNOG00000049888 ENSRNOT00000075650 2 1 1 60 3 76186797 76186817 ATTGTTGCTCCAAAGATGCTG 60 76186757 76186780 CTACAAATGATATGGTTCTGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029732.1 ENSRNOG00000054498 ENSRNOT00000092113 1 1 1 80 10 48498088 48498109 TGTGGAGCCAGCTATAAGC 60 48498153 48498171 ACAGATGTCCAGGCATCTG 60 Novel Rattus norvegicus 81 AABR07061077.1 ENSRNOG00000058738 ENSRNOT00000086523 3 1 1 60 4 103636474 103636492 GTCTCCTCAGCTTCTGACC 60 103636432 103636451 GAACCTGTCTGAGACTCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021204.1 ENSRNOG00000055008 ENSRNOT00000082129 1 1 1 80 13 60619435 60619453 CTTCCAACTGCTACTGCTG 59 60619491 60619515 CCAAAGTATGAGTAGTCTATTCTGG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07051996.1 ENSRNOG00000033278 ENSRNOT00000041305 3 1 1 60 3 31803185 31803204 CAGATGAGGCACCTAAAGAC 58 31803226 31803245 TTGTTCCTTCACGGAATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000222.1 ENSRNOG00000014431 ENSRNOT00000019345 1 1 1 60 1 5238661 5238680 ATCGCATTGCTATACCTGAG 58 5238620 5238638 ATGAACTGTTCCTCTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000058048 ENSRNOT00000082128 1 1 1 60 1 6038653 6038672 CTAGGATGCAGAGGAAACCA 59 6038692 6038713 CATCAATCTGGACCACAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041963.1 ENSRNOG00000026379 ENSRNOT00000037031 3 1 1 80 X 144318970 144318989 ACTATTTCTCTGCAGCACAC 58 144319031 144319052 CAATGCACCTATGAAAGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054084 ENSRNOT00000085455 2 1 1 60 6 64927232 64927253 ATACAGAGAAGATTAGCATGGC 58 64927193 64927212 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054084 ENSRNOT00000085455 3 1 1 60 6 64927233 64927255 CGATACAGAGAAGATTAGCATGG 59 64927195 64927213 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056986 ENSRNOT00000082922 3 1 1 60 1 136498027 136498045 TGTGAGTGTCCCTTTCCTC 59 136497985 136498004 TAAGTGTACAGCTTTGGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000058027 ENSRNOT00000082817 2 1 1 65 2 198849059 198849077 CAAGTTCTGCTGCTCATGG 59 198849012 198849030 TCTGCAGCCAAACTTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004497.1 ENSRNOG00000041552 ENSRNOT00000063305 2 1 1 65 1 146824854 146824877 GACATTGGAAGAAAGAAGACTCTC 60 146824812 146824830 CTAGCAGTCACTCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056170 ENSRNOT00000086983 2 1 1 60 6 108384365 108384387 GGAACGATACAGAGAAGATTAGC 59 108384327 108384345 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 1 1 1 62 X 147586539 147586560 TCTACCCGAATACATTCGTG 57 147586496 147586517 GCTTATTATTTCCCAGATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017737.1 ENSRNOG00000059001 ENSRNOT00000085402 3 1 1 77 15 30440792 30440810 TTCACTAGTGGTCCTGTGG 59 30441022 30441041 ATGAGTGATTCTGGGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103690910 ENSRNOG00000052269 ENSRNOT00000086405 3 1 1 65 X 139329785 139329803 AGAAGTATGAAGCCCTGGC 60 139329738 139329759 CGGAATAGTTTCTCATTTCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053866.1 ENSRNOG00000051005 ENSRNOT00000072407 3 1 1 89 3 131531514 131531533 CGGTCGAGATCAAGAAAGGA 60 131531438 131531461 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 U6atac ENSRNOG00000054887 ENSRNOT00000079831 1 1 1 60 2 211289749 211289767 GAAGGAGGGAAGGTTAGCA 59 211289791 211289809 GTTGTTAGGCTCAAGGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053512 ENSRNOT00000080126 1 1 1 60 1 200218107 200218127 AACATGCTACAGTGATGAAGG 58 200218067 200218088 CTACTCAACCTCTACTGTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000051900 ENSRNOT00000090075 2 1 1 60 9 82874026 82874047 AAGTGGCTATTTCTACACTCAG 58 82874066 82874086 GGCTACAAACCATTCTTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055373 ENSRNOT00000091564 2 1 1 99 5 133927451 133927469 TGTCTTTCCCAGGACAAGG 59 133927370 133927392 GAGGAGAACATGAACATAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 2 2 2 94 2 208550252 208550271 TTTGTGTACTGATTAGCGGG 58 208550328 208550854 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 AABR07050116.1 ENSRNOG00000056863 ENSRNOT00000081107 1 1 1 60 5 152070703 152070723 CTCATCGACTTACACAGTCCT 59 152070663 152070687 GCTCAATACTGATGGAAGTAATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017812.1 ENSRNOG00000057587 ENSRNOT00000081826 2 1 1 80 15 31282081 31282280 GGCTCCAATTAAACTGGGT 58 31282324 31282342 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054622 ENSRNOT00000079029 1 1 1 60 1 241873529 241873547 GAGAAGATTAGCATGGCCC 58 241873487 241873505 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060321 ENSRNOT00000084828 1 1 1 67 1 189016567 189016585 GTGTCAGTAGGTGGCAGAG 60 189016518 189016536 ATTCAGATGTTCGCAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051526 ENSRNOT00000084524 2 1 1 60 6 67112896 67112916 TTGACTTGAATGGTCTGACTG 58 67112936 67112956 TAGCTAGAACAGTGAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129054.1 ENSRNOG00000048460 ENSRNOT00000073887 1 1 1 90 10 12565030 12565048 ACATTGTGGAGCATGTGTC 59 12562659 12564976 ATTGAGCTACCTGAGGACC 59 Novel Rattus norvegicus 81 Rn60_10_0635.1 ENSRNOG00000051188 ENSRNOT00000075897 3 1 1 60 10 64592953 64592971 TGGCTACTGTCACTCAAGG 59 64592911 64592931 AATGTGCCTCTACCTACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058615 ENSRNOT00000085421 2 1 1 60 1 197983400 197983420 GTAAGATTAGTATGGGCCCAG 58 197983360 197983379 AAATACGGAATGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 3 1 1 64 4 183941460 183941480 AGAAGGATCCTGGAGAGCA 60 183941506 183941526 GGATGATACTGCTTCAGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000042445 ENSRNOT00000035001 2 1 1 80 10 104442162 104442332 AGATCGGCTTCATCGAGAC 59 104442376 104442394 CCAGCTTACTGACCCTCAG 60 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304,ENSRNOT00000075256 1 2 2 93 2 208392614 208392632 TTGTGTACTGATTAGCGGG 57 208392689 208393215 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304,ENSRNOT00000075256 3 2 2 96 2 208392611 208392630 CGTTTGTGTACTGATTAGCG 57 208392689 208393215 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000061214 ENSRNOT00000088452 2 1 1 60 5 150492171 150492189 GAGACTTTGACAGCCAGGT 60 150492211 150492231 CATATAGGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050149.1 ENSRNOG00000047722 ENSRNOT00000073375 3 1 1 60 5 153549762 153549780 GCCTTGAACTCAGAGATCC 58 153549720 153549739 ACACATCCCTTTAATCCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017841.2 ENSRNOG00000060250 ENSRNOT00000082666 3 1 1 93 15 31769884 31770682 TACCTCAGAGGAACAAGCA 58 31769499 31769520 CTTGTTGTAAGAATCCTGACGA 59 Novel Rattus norvegicus 81 SNORA63 ENSRNOG00000051501 ENSRNOT00000090781 3 1 1 60 14 107604183 107604203 AAATACATCACCATCTCTGCC 58 107604222 107604243 GTTAGAAACCAAGTGTCTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058179 ENSRNOT00000085773 1 1 1 60 5 74897199 74897217 AGTTCTGGGCTGTAGTGTG 59 74897157 74897178 CATATTGATGCCGAACTTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000061144 ENSRNOT00000083541 3 1 1 60 14 36664778 36664798 AGAAGGGTAAAGGAAGTCTCC 59 36664738 36664756 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055601 ENSRNOT00000079706 2 1 1 84 14 56859573 56859591 GAGTTTATCCGAGGCACGA 60 56859507 56859530 CTCAAAGAGAATCAGTAGTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061473 ENSRNOT00000088973 1 1 1 60 14 41243127 41243147 GTGGTGGCTATGTTACATGAG 59 41243168 41243187 AGCATAAGATACAACCGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055615 ENSRNOT00000085884 3 1 1 63 2 32319588 32319609 GAACGATACAGAGAAGATTTGC 58 32319546 32319566 GGAACTTAACAGATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141573.1 ENSRNOG00000057637 ENSRNOT00000091017 3 1 1 106 4 84591288 84591308 GTCTTACCTTCCCGAGCTG 60 84591200 84591218 AACGTTAGGGACCATGAGC 60 Novel Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 2 1 1 92 9 78295401 78295421 TCCGCTTTCTACTGCTCAC 60 78295327 78295345 GATGCCAATTCTTGGTGGC 60 Novel Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 2 1 1 60 4 126071146 126071167 ACAACATAGAGAAGGATATCGC 58 126071107 126071129 GGGTTGTACTTCTTGTCAAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.1 ENSRNOG00000055428 ENSRNOT00000087773 3 1 1 60 4 101883017 101883038 GTTTCTTGGGTTATTGATGCTC 58 101883169 101883187 CTGGGTCATCTGAATGTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058116.1 ENSRNOG00000004906 ENSRNOT00000006506 2 1 1 60 7 100701554 100701572 TGGTCAGACACTTCAAGGA 58 100701595 100701614 CTTCTGCTTGAGGAATTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025048.2 ENSRNOG00000057966 ENSRNOT00000079010 1 1 1 85 16 26499896 26518824 GAATGAAGATGAGGACCTCCA 59 26518871 26518889 TGTGTTCTTCCTCTGAGCA 59 Novel Rattus norvegicus 81 AABR07017783.4 ENSRNOG00000060016 ENSRNOT00000090250 1 1 1 60 15 31051443 31051461 GGTCACTCTCACAGAGCAG 60 31051481 31051503 TGAGTAAGTAGTCTGATAGGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.4 ENSRNOG00000060016 ENSRNOT00000090250 3 1 1 60 15 31051527 31051546 GCAATATCTCAATGAAGCCC 57 31051568 31051587 GATCCTCTTGTTGTCTGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.2 ENSRNOG00000054681 ENSRNOT00000091830 2 1 1 82 17 89773062 89775070 GACTCACAGAGGAGAAATTCTC 58 89773001 89773021 GCACCTTGTTGAAGAATAAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000057006 ENSRNOT00000081414 2 1 1 60 13 34536476 34536496 AGAACTTCAAGACACTGAGGA 59 34536436 34536456 GGGAGATCTTTCCATCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021584.1 ENSRNOG00000041572 ENSRNOT00000063325 2 1 1 60 13 79425262 79425282 ATTGGAAGAAAGCAGATGCTC 59 79425222 79425240 AGCAGTTGCTCAATCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053853 ENSRNOT00000085219 2 1 1 60 1 235254000 235254020 CTAGAAAGTGTGACTTCAGCC 59 235253960 235253982 CTTTCAAGACCCTGTAAATGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 2 1 1 107 15 29446163 29446181 CAGAAATGCAGTGCCTGAG 59 29402556 29402574 ACTTTGTTTCACCTGCTGC 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 3 1 1 108 15 29446165 29446183 ATCAGAAATGCAGTGCCTG 59 29402557 29402575 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07048059.1 ENSRNOG00000060049 ENSRNOT00000082554 2 1 1 60 5 58917740 58917758 TTCTCACTCCCAGGAAGAC 58 58917698 58917719 AAAGACAGAAACATCTGCATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048059.1 ENSRNOG00000060049 ENSRNOT00000082554 3 1 1 60 5 58917472 58917490 CAACCACTTCACCTGTGAG 58 58917430 58917449 GATGGAGATATCAGCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123185.2 ENSRNOG00000055266 ENSRNOT00000090037 3 1 1 80 15 108869255 108869276 GAAAGATACACCGATCCACAC 59 108869195 108869215 GTCTGTTTCCTCTATGCTGTG 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058881 ENSRNOT00000083445 2 1 1 60 9 66499222 66499243 TGTGGTGTTGTTCTTACATCAG 59 66499263 66499282 CTAGGATGAACAAAGGACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057428 ENSRNOT00000087881 3 1 1 61 5 128142862 128142880 ACACGGAAGATTAGCATGG 58 128142819 128142837 ATGTAGACTGCTTCACGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054431 ENSRNOT00000090058 1 1 1 60 10 4544604 4544623 TGCACTTGGAGTTTGTTGAC 59 4544645 4544664 AGTATGCAGTTGTGTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021736.1 ENSRNOG00000034300 ENSRNOT00000048823 1 1 1 60 13 88782109 88782127 TGGGTTCACATTGTTGGAG 58 88782146 88782169 CAAACTTATAGGCAGTAGCAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000083333,ENSRNOT00000085393 2 2 4 62 X 73460259 73460279 AGAAAGACGGGAGTACTTCAG 59 73460868 73460889 CATCTTGAGTTAATGGAGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000053758 ENSRNOT00000078165 1 1 1 60 3 58061417 58061435 GTTGGATTAGGAGCTTGCT 58 58061459 58061477 TTCCTGGAGGTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059142.1 ENSRNOG00000059626 ENSRNOT00000089919 3 1 1 170 4 4690128 4690146 AGGACGTAAGAGCATCGTG 60 4689973 4689991 TCTTGGTGACTGAGCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000056866 ENSRNOT00000080054 3 1 1 60 10 76580408 76580426 TTGACAAGAGCCTAAAGCA 57 76580366 76580384 GTAGATGCCACAAAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045206 ENSRNOT00000070473 1 1 1 60 6 121316005 121316029 CCACCCTTAACATACTTAGTTTCAG 60 121315969 121315988 TATCCAAGCACTAGCCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060385 ENSRNOT00000079851 3 1 1 60 7 140139267 140139285 AGCTGTTGGTTTCAAGCAG 59 140139225 140139243 TGAAATGGCCAACAGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065498.1 ENSRNOG00000051719 ENSRNOT00000079807 1 1 1 80 6 132131058 132149972 GCCAAAGGAACACATTATCCC 60 132130998 132131018 GAGTTTGTCACCATCCAACAG 60 Novel Rattus norvegicus 81 AABR07053968.1 ENSRNOG00000060762 ENSRNOT00000084221 3 1 1 60 3 133894433 133894451 TCCATCCTCATACTCGCTG 59 133894391 133894410 TTCCCTATGACCATATGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051641 ENSRNOT00000077515 1 1 1 60 14 17256595 17256616 CTCAAACACGCATGTAATTGAG 59 17256556 17256575 TAAAGGCAGTGGTTTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051524 ENSRNOT00000081608 1 1 1 60 5 165257908 165257926 AGGAGTTCAAAGGCTGAGG 59 165257866 165257884 GGGAAATCACAGGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056256 ENSRNOT00000080659 2 1 1 60 10 89539678 89539696 AGTTGGAATAGGAGCTTGC 58 89539720 89539738 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014882.1 ENSRNOG00000057975 ENSRNOT00000088178 2 1 1 83 14 35776280 35776298 CTGTCCTCACCTCTTGCTC 60 35776214 35776235 CCTTCCATCTCTGAAGAACCA 60 Novel Rattus norvegicus 81 AC095695.2 ENSRNOG00000056638 ENSRNOT00000085180 3 1 1 61 10 57676001 57676020 AGATGGCTCGTGGTTAAGAG 60 57675959 57675977 TGCTGGGAATTGAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050005 ENSRNOT00000072876 1 1 1 60 5 57678078 57678097 GCCAAATCTCACCTGATCTC 59 57678118 57678138 TCCCATTCCAAGTACTAACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059657 ENSRNOT00000080495 2 1 1 60 10 74778222 74778245 CGTTACTAGAGAAGTTTCTCTGAC 59 74778264 74778282 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.1 ENSRNOG00000050010 ENSRNOT00000075743 2 1 1 60 13 85672649 85672667 GACTCTTGTTACAAGCGCA 59 85672607 85672626 AGAAATGCAGAATCTCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052410 ENSRNOT00000087205 3 1 1 60 5 72315312 72315333 GTGTCACATGTGCATTAGTAGG 60 72315273 72315294 GAACACTGAGCATAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051511 ENSRNOT00000088496 3 1 1 60 5 147585658 147585677 TTAAGTCAACCAGGAAGGTC 57 147585700 147585718 CCATCTGCAACAATTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053385 ENSRNOT00000089764 1 1 1 60 13 66603958 66603981 CTATGTCACATGTAGGTAGTAGAG 58 66603921 66603939 CATCAGGTGTTCAGAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 2 1 1 60 10 104714041 104714060 AAGACTCTGCCGATACACTC 59 104714000 104714018 TTCTCAGTAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053018 ENSRNOT00000078983 2 1 1 61 10 37419644 37419663 AAACCCAGGATTCTTTCCTC 58 37419687 37419705 CAAAGAGGCTGTTGTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD77 ENSRNOG00000060075 ENSRNOT00000085413 2 1 1 60 13 78854986 78855007 ATAACATAGTTCAGCAGACGTG 59 78855026 78855046 CATCAGATAGGAGCGAAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.2 ENSRNOG00000056727 ENSRNOT00000088206 3 1 1 61 7 67116748 67116766 GTCTCAGGATGAGGTGGAG 59 67116705 67116723 CCTTGAGGATGAGGATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058985 ENSRNOT00000083032 1 1 1 60 13 109802204 109802224 GGATGTGAGTGTAATCTTGCT 58 109802245 109802264 CAGAACAAACCCTGTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002564.1 ENSRNOG00000022227 ENSRNOT00000029823 3 1 1 60 1 77111796 77111817 GCATCCTTAACTGAGAATGAGC 60 77111836 77111856 AGTTCAAGTCCAACTTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052295 ENSRNOT00000088285 2 1 1 61 3 38037665 38037683 GGCTACTGTGTCACATGTG 59 38037706 38037726 TGAGTGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054397 ENSRNOT00000078253 1 1 1 61 6 125593233 125593251 GTGCTTACTTCAGCAGCAC 60 125593276 125593294 TAAGGGCCATCCTGATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056909 ENSRNOT00000091047 3 1 1 60 19 18783409 18783428 TGACTACTGTGTCACTTGTG 58 18783447 18783469 GGATATAGACATAGCCTTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002893.1 ENSRNOG00000056062 ENSRNOT00000087232 2 1 1 95 1 88516036 88516054 CAGCTGTTCTCCTTGTTGG 59 88513376 88515982 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000059409 ENSRNOT00000082220 1 1 1 60 6 100876911 100876931 CTCCTTTACAATGTGCATGAG 57 100876871 100876894 TACTGAGCATAGACATAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060816 ENSRNOT00000083744 1 1 1 60 10 56274149 56274167 TGTAGGCCTTTGTTCATCC 57 56274107 56274125 AGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060816 ENSRNOT00000083744 3 1 1 60 10 56274179 56274201 GTGTTGTTCCTATATCAGTCAGG 59 56274141 56274161 TCAAGCTAGGATGAACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059617 ENSRNOT00000086312 1 1 1 60 10 106084726 106084748 TCAGTCAAGGGTATATGAGTAGC 59 106084768 106084786 CTTGAGAGCTTGTCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 2 1 1 60 13 78855392 78855411 AGTGATGTGATGATTCTGCC 58 78855431 78855452 AAATGGAACGGTTGTAAAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034350 ENSRNOT00000052473 2 1 1 60 7 128122505 128122523 CCCGATCTTGTCTGATCTC 57 128122543 128122565 CATCTTCTAAGTAATGACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055731 ENSRNOT00000088894 2 1 1 60 1 221848827 221848846 CTCTGAATGCAGCCAATGTC 60 221848786 221848805 GTTGTAACTAGCCACACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058826 ENSRNOT00000088154 2 1 1 60 1 270022459 270022477 CCCACATGTTTCTCTTCCT 57 270022417 270022436 TCTTGTAAAGAAGGCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000060097 ENSRNOT00000091851 3 1 1 61 18 70372886 70372904 TAGTTCCCTTGGCCTTGAC 59 70372927 70372947 CAGTACTTTCAATGCAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056569 ENSRNOT00000090068 2 1 1 60 13 183427 183449 CGATACAGAGAAGATTAGCATGG 59 183469 183487 AACGCTTCACAAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052711 ENSRNOT00000085261 3 1 1 60 10 103384176 103384196 CTAGTTGAAGATGACCTTCCC 58 103384218 103384236 GCTTGTGTAAGCTTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoMBII-202 ENSRNOG00000054310 ENSRNOT00000078041 3 1 1 74 19 55918127 55918145 ATGACATTCTCCGGAATCG 57 55918183 55918201 AAAGCTCGTAGTCAGATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058325 ENSRNOT00000077946 3 1 1 60 18 78635401 78635420 TTCTGAAATTGGACCGACAC 59 78635441 78635461 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 2 1 1 74 13 109990798 109990816 TGTGTTTCACTCCAGACGT 59 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000059492 ENSRNOT00000088689 2 1 1 90 1 60884984 60885543 GTCTCCCTGGGAATGACAC 60 60885596 60885615 TTATTGCCTCACTCTCCACG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034421 ENSRNOT00000052544 1 1 1 60 7 56875560 56875581 GCACCTGATCTTGTCTAATCTC 59 56875521 56875539 CCATCCAAGTCCTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059935 ENSRNOT00000077680 3 1 1 60 18 25084099 25084118 TGTTGATTCAGCTGAACTGG 59 25084140 25084159 CACAGATCAGTGAAGGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049541.1 ENSRNOG00000052771 ENSRNOT00000080647 1 1 1 89 5 127755630 127755795 TGGGAACTGGATAGAAAGGA 58 127755953 127755973 GGTGATTAAGAAGAGACCAGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 2 1 1 60 18 31515548 31515566 TTGAACCCACCCTGATAGC 59 31515588 31515608 AATATTAACCAGCCTGACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065485.1 ENSRNOG00000060077 ENSRNOT00000089365 3 1 1 80 6 130670079 130670102 AGATTTCACCTCACATGCGA 60 130670018 130670038 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000051425 ENSRNOT00000088417 3 1 1 60 6 80258597 80258615 GAGTACACTGACACTGGCT 59 80258555 80258573 TTGAATCTGGACCAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052079 ENSRNOT00000087841 1 1 1 60 6 71960626 71960647 GAACGATACAGGAGAAGATTGG 59 71960668 71960686 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.2 ENSRNOG00000051433 ENSRNOT00000089635 2 1 1 80 4 114778101 114778119 TGACCACTCTAAAGCCCAC 59 114778162 114778399 TTGTCTTTGCCAGAACTCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057445 ENSRNOT00000090205 1 1 1 60 X 116177112 116177131 GGAAGCAACAAGGAGAAAGG 59 116177151 116177172 ATTCAGATGTTCATAGGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053806 ENSRNOT00000086449 3 1 1 62 X 1517933 1517951 AAACTGGACAGAAGAGGCC 60 1517889 1517907 AAGTCTGTTGCAAGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052139 ENSRNOT00000080561 2 1 1 60 18 78641832 78641852 ATTCTGAAATTGGACCGACAC 59 78641873 78641892 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059912 ENSRNOT00000082872 1 1 1 60 3 39945842 39945861 GCTGGTCCATAGGTAATGAG 58 39945882 39945902 AGATCAACCTGTAACTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059584 ENSRNOT00000082745 2 1 1 60 18 16136832 16136854 GGAACGATACAGAGAAGATTAGC 59 16136794 16136812 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr1 ENSRNOG00000049693 ENSRNOT00000041838 3 1 1 89 11 33845739 33846243 ATCGCCTTCAAAGTTGTTGAC 60 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 AABR07019116.1 ENSRNOG00000048448 ENSRNOT00000073422 1 1 1 60 15 89800861 89800880 ACACGGATGAACTGATCAGG 60 89800820 89800840 GATTTCAAGGCATCAAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019116.1 ENSRNOG00000048448 ENSRNOT00000073422 3 1 1 60 15 89800860 89800879 CACGGATGAACTGATCAGGA 60 89800819 89800840 AGATTTCAAGGCATCAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.2 ENSRNOG00000051768 ENSRNOT00000084482 3 1 1 145 6 139429025 139429316 AACTAAATCACTGCACAGACTC 59 139429532 139429550 AGAGTTTCAGGGACCTTCC 59 Novel Rattus norvegicus 81 AABR07032622.1 ENSRNOG00000051848 ENSRNOT00000086400 3 1 1 139 18 74006049 74006068 GCTGAATTCAGTCCTCAGAG 58 74102608 74102627 CTTGAACAGGACGTTAGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021861.1 ENSRNOG00000053085 ENSRNOT00000088174 3 1 1 101 13 95958432 95958450 CTGAGCTGCTCTTCATGAC 58 95958345 95958367 ATAGCCAAGGTTGTACTGC 58 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058062 ENSRNOT00000090209 1 1 1 60 3 138472726 138472745 CTTGGTTCAGAGCAACTTCC 59 138472767 138472786 TCAGCCAATTTCAATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000056958 ENSRNOT00000083715 2 1 1 65 18 24631280 24631299 GAAACAGCACTTCTGGTGAC 60 24631234 24631252 CTTGTCACAACACCGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056905 ENSRNOT00000083588 3 1 1 66 X 33478087 33478105 TACATTTCCCAGGGCAAGG 60 33478039 33478058 GTCGAGTTTCCTGCATTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.5 ENSRNOG00000051694 ENSRNOT00000089387 3 1 1 107 6 138744343 138744445 ATTTCCAACCTGTGTCCTG 58 138744254 138744272 AGTGAGAACCCAGAGACAG 58 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 2 3 3 82 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016326 74016344 AGATTCTTTGGCCATGTGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056510 ENSRNOT00000078301 3 1 1 63 18 3530016 3530034 ATGGCTTCCATGTCATGTG 58 3529971 3529991 TGAGTGTACACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000051558 ENSRNOT00000085113 2 1 1 60 3 154973567 154973585 CAGTTGGTGGTTCACAGTC 59 154973606 154973627 AAACAAGTCAAGTGCAGTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035437 ENSRNOT00000053560 1 1 1 60 6 72181488 72181506 TCTTGGAAGCTAAGCAGGG 59 72181446 72181464 GGAATTCCCAGGTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060885 ENSRNOT00000081734 2 1 1 60 X 32924653 32924671 CGAAGACAGAAGAGGTCCT 59 32924692 32924713 ATAGGTAGGAATGCCTTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017527.1 ENSRNOG00000047841 ENSRNOT00000075763 1 1 1 60 15 25280247 25280268 TTTAAGATGCAGATTCCAGTCC 59 25280208 25280228 GAGCTTGTTAGAAATGCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041787.1 ENSRNOG00000041292 ENSRNOT00000063045 3 1 1 60 X 140117792 140117812 TGTGTCTCTTGTGTTAAGGTG 58 140117752 140117772 GGCAGTAGATTATAAGCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055395 ENSRNOT00000081668 2 1 1 60 7 45856549 45856570 ACAGAGAAGATTAGCATAGCCC 60 45856588 45856609 GTGGAACACTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054021 ENSRNOT00000082165 2 1 1 60 X 83121521 83121545 ACTAAGAAAGAATATCCTTCCTCCC 60 83121563 83121581 TGTGTAGCTTCAGGAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055034 ENSRNOT00000084231 2 1 1 60 4 103410325 103410347 GACTTATAGAGTCATTGCAGGTG 59 103410287 103410305 TTCTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052210 ENSRNOT00000081490 2 1 1 60 20 43797884 43797902 CATGTCACATTTGCCTCAG 57 43797923 43797944 AGAACACAGTGTAGACATAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000054611 ENSRNOT00000087480 1 1 1 60 15 85776141 85776159 CACTGTCTAGCCTCATAGC 57 85776181 85776201 GTCTGTTTGAATTTAGCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044722 ENSRNOT00000069989 2 1 1 60 6 64116345 64116365 ACCCTGAACATGCTAGATCTC 59 64116305 64116326 CTCATCCAAGTACAAATCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000076019 2 1 2 112 17 13488438 13507861 GGGTTTAAGAGATGTCTTCCTG 59 13516263 13516281 TACAACCTCATGCCAAAGG 58 Novel Rattus norvegicus 81 AABR07061039.1 ENSRNOG00000058405 ENSRNOT00000092130 2 1 1 80 4 103049571 103049968 GATTCCTGCTTCCAGAGGT 59 103049509 103049529 ATAGAGACTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054752 ENSRNOT00000084786 3 1 1 60 15 26297799 26297817 TCGGTCAAGGGTATACGAG 58 26297840 26297859 AATGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055897 ENSRNOT00000088563 1 1 1 60 4 179556399 179556418 AGTTGATTTGGCTGATCTGG 58 179556358 179556376 CTCTGGAGTGGTAAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055897 ENSRNOT00000088563 3 1 1 60 4 179556363 179556381 CCTTCCTCCCTTACCACTC 59 179556321 179556345 CTGAAGACTAGTTCTCTTCTATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056822 ENSRNOT00000086741 2 1 1 61 5 39954116 39954134 CAGAAGTGGGTTGGTAGGT 59 39954073 39954094 AGTCAGAACACTGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054701 ENSRNOT00000079728 2 1 1 60 19 45819043 45819061 TAGCCATTGCTTTCCAGAC 58 45819084 45819103 TAGCTGAGTTTCTCACAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060539 ENSRNOT00000078004 1 1 1 60 11 81376570 81376589 AGAAGAGTAACTGCACTGGA 58 81376529 81376550 ACACTGGACATTAAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002008.1 ENSRNOG00000056036 ENSRNOT00000081213 1 1 1 80 1 64745841 64745859 CCTGGACTCTACTCAGAGG 58 64745901 64747539 CAGTAGTTCTCAACAGAGACC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 1 1 1 60 9 110547370 110547388 GAGCACACTTGATCTCCTC 58 110547328 110547346 GAAGCAGTAAGCGGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 2 1 1 65 18 34788165 34788183 TCCTCTTCCTCTTCCTCCT 59 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058459 ENSRNOT00000091416 1 1 1 60 18 23172497 23172515 TTGTGTCACATGTGGAGGT 59 23172539 23172557 CACATGTCAGAGCACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0435.2 ENSRNOG00000053113 ENSRNOT00000083589 1 1 1 60 1 42134175 42134196 CTGGTTCATTTGGCTATTTGAC 58 42134216 42134235 TCATTTCCTAACTGAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058440 ENSRNOT00000084096 1 1 1 60 5 35285252 35285271 GCAGGACTTCATGTACAGAC 58 35285293 35285312 ACAATCATGTGTTGCTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072644.1 ENSRNOG00000047742 ENSRNOT00000074929 1 1 1 60 19 38207423 38207442 ACAATGCTGGTCTCAAACTC 59 38207465 38207483 TTTAGTCCCAGCATTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056026 ENSRNOT00000077510 1 1 1 60 11 81375294 81375312 GTAAGACCACACTCCACAG 58 81375252 81375273 GGCCACAATATAGTAATGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061098 ENSRNOT00000086292 2 1 1 81 5 149367960 149367978 TAGAGGCACTGCAGATGTG 60 149368021 149368041 ACTGAGCATAGACATCGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058104 ENSRNOT00000080360 3 1 1 60 19 55619165 55619187 CTAAACATCACCTAGAGCAAACC 60 55619127 55619147 CCAGACCTAGGGAAAGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052131 ENSRNOT00000091169 2 1 1 60 4 150159681 150159701 AAGGGCTATGTCTATGCTCAG 60 150159641 150159661 GTTAGGCTACTACTCATTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000053608 ENSRNOT00000079078 2 1 1 60 3 9895529 9895548 AAAGGTTGCTATCTAAGGCG 58 9895488 9895507 GGCAGATCGCATTACTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000053608 ENSRNOT00000079078 3 1 1 60 3 9895540 9895558 TTGAGTGGGTAAAGGTTGC 58 9895498 9895516 ATTACTTAGGCATCCCGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057621 ENSRNOT00000089884 2 1 1 61 18 75933302 75933321 GAGAGGCTGTCTCTACACTC 59 75933260 75933280 GTCAGGCTATCAGTCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056317 ENSRNOT00000080261 3 1 1 60 18 87575730 87575752 CTTATCCCTAAGTATTGCAGGTC 59 87575772 87575790 CTCTGCCACTTTCTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007592.1 ENSRNOG00000051732 ENSRNOT00000082468 3 1 1 109 2 20724291 20724310 GGGCTGATGAGCATTTACTG 59 20724197 20724222 CTCCAAATGCATGTTTATGTGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045322 ENSRNOT00000070589 1 1 1 60 5 59194204 59194222 TGATCTCAGAGGCTAAGCA 58 59194246 59194264 GAATGGCTTATCTCCCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021220.1 ENSRNOG00000058486 ENSRNOT00000091496 1 1 1 86 13 61363616 61363635 GGTAGCACAAAGTGAAGCTG 60 61363686 61363705 ACTACCGGTTTGAACAACTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055273 ENSRNOT00000083391 1 1 1 60 7 49260867 49260885 AGGCTACGCCTATGTTCTG 59 49260903 49260927 CTATTAGGCTACTAATCATTCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053277 ENSRNOT00000084468 1 1 1 60 3 124796082 124796100 CATGAGCGATTGTACTCGG 59 124796124 124796142 TTCCAGTTTCCCACATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056099 ENSRNOT00000091451 3 1 1 60 18 81588151 81588169 AGAGTGCTTACTGCTTCCT 58 81588109 81588127 GGGCTAAAGAATGGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057255 ENSRNOT00000083040 2 1 1 60 18 7640866 7640887 GTCAAGGGTCTAAGAGTAACTG 58 7640827 7640846 GGTCTTCAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059511 ENSRNOT00000088989 3 1 1 60 4 179054885 179054903 GGTAGATGGCAGAGAACTG 57 179054843 179054861 GGTTGTTCACAGGTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065165.1 ENSRNOG00000053619 ENSRNOT00000088043 2 1 1 60 6 112726769 112726788 TTACTCACTGAGAGCATCCA 58 112726728 112726748 GATGTAAAGGAGGAGTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000061903 ENSRNOT00000082308 2 1 1 89 6 43365337 43365355 TTGCTAGTGACCCACTGAG 59 43365407 43365426 ATTGACTGAAGCAAACAGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058280.1 ENSRNOG00000056425 ENSRNOT00000081130 3 1 1 71 7 108383880 108383899 ATGAGATCCAGCTGTAAGGC 60 108383828 108383846 ACAGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055213 ENSRNOT00000078767 2 1 1 105 7 144090359 144090378 TATCCACAGGACAGGTACAG 58 144090446 144090464 TCACCTCTAGAGGTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051493 ENSRNOT00000082234 1 1 1 60 9 98635419 98635442 CGATACAGAGAAGATTAGCATGAG 59 98635382 98635401 CATGCTTCATGACTTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051493 ENSRNOT00000082234 2 1 1 60 9 98635424 98635446 GGAACGATACAGAGAAGATTAGC 59 98635386 98635404 CTTCATGACTTTGCACGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054880 ENSRNOT00000081793 1 1 1 60 5 71411816 71411835 GCTGCTAAATCTGTCAACCC 59 71411857 71411876 CTTAGTAAGCCAGTTCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127106.1 ENSRNOG00000061321 ENSRNOT00000089291 3 1 1 65 2 3124296 3124316 GTAACCTCCCTGCTCTGTC 60 3124343 3124363 GAATGACTGTCTGTTCTGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07063893.1 ENSRNOG00000058209 ENSRNOT00000091972 2 1 1 80 6 54443254 54443277 GAGATTTCACCTCACATGCG 59 54443319 54443338 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07015500.1 ENSRNOG00000057727 ENSRNOT00000089645 3 1 1 65 14 59811543 59811567 AAGCACTTTACTTGAGCAACTC 60 59811593 59811611 GCTTTGGAGATTCTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058168 ENSRNOT00000082060 2 1 1 60 9 111065964 111065984 TATAGGAGGAGCAGTCTTTGG 59 111065924 111065943 AAATTCTAGCAAGGGACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060409 ENSRNOT00000085299 3 1 1 60 9 14262710 14262728 CGTGAGTATCTGGAGTCCC 59 14262749 14262770 GTGACATACTTCAGAACTTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064231.1 ENSRNOG00000058377 ENSRNOT00000078958 3 1 1 60 6 70276385 70276405 AATCCGGAAGAAGATTGAGCA 60 70276427 70276445 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109942.1 ENSRNOG00000042851 ENSRNOT00000038079 1 1 1 60 7 15129975 15129994 ATGAAGATGCCATCATGGGT 60 15130016 15130035 CAAGCATCGTTGATGTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 1 1 1 60 17 79036237 79036257 CTAGAACCTCCAAACAAGCTC 59 79036279 79036297 CATTATCACCCGTGTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0651.1 ENSRNOG00000051285 ENSRNOT00000076238 1 1 1 80 8 65282846 65282864 CAGCATCTGCGATCAACAG 59 65258675 65282802 GTCTGGACATGCATTGGTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045242 ENSRNOT00000070509 2 1 1 60 4 39094484 39094505 TTCTCCATCTGATCTCAGAAGC 60 39094526 39094544 ATTTACCATCCGAGCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.2 ENSRNOG00000048880 ENSRNOT00000074315 1 1 1 60 9 50005868 50005887 GAAGTCAAATTCACCAGCAG 57 50005827 50005845 AATCCTCCGTACCATCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076841,ENSRNOT00000085052,ENSRNOT00000088581 2 3 6 60 10 74882540 74882559 TGCCTGTACTTCATCTCACC 60 74882902 74882921 ATTCCAAAGTGCTCGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060183 ENSRNOT00000077780 2 1 1 60 7 53616613 53616632 CCACAACTGGAAGGATAGAG 57 53616572 53616592 ATCTGTATGCTATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044338 ENSRNOT00000069605 1 1 1 63 7 32471367 32471388 TGCACTGGTTACATCTAATCTC 58 32471325 32471343 TTCTCCCAGTCAGGTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052462 ENSRNOT00000080164 1 1 1 60 6 34700082 34700100 GTACCTAAGCAGGTAGCAG 57 34700124 34700142 GATGTTTGTCGACTCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063282.1 ENSRNOG00000056254 ENSRNOT00000089127 3 1 1 62 6 26641097 26641119 CATACTGAGGAGAGCCACC 59 26641053 26641071 TTTCCACCTTTGCTCTGAC 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA71 ENSRNOG00000053698 ENSRNOT00000089372 1 1 1 60 4 67208511 67208529 CCTGGATTCTGGTCATTGG 58 67208469 67208487 TCCAAATACAGGGAAAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561,ENSRNOT00000076045 1 4 4 65 1 134885482 134885500 ATGGTAATGTGGTTGCCGA 60 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000057046 ENSRNOT00000077843 2 1 1 60 17 28893313 28893332 GTATGTTTGCTGCATCACAC 58 28893272 28893290 CTGAGCATAGCCTCACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 3 1 1 60 10 23480850 23480868 GACAGGCTAAACATTCGCT 58 23480808 23480827 GGTAAAGAACTAGGTCTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057421.1 ENSRNOG00000047216 ENSRNOT00000072394 1 1 1 60 7 70287317 70287337 GTGGCTGGATTCAAGTAATCC 59 70287356 70287377 TAATCAAGAATAGGCCTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014304.1 ENSRNOG00000057639 ENSRNOT00000084419 1 1 1 81 14 8598851 8598874 CTGATGTTCTTAGTCCTTACAGTG 59 8598790 8598812 AGGGTTCTGTGTACCTTGAG 59 Novel Rattus norvegicus 81 AABR07067042.2 ENSRNOG00000048697 ENSRNOT00000073490 2 1 1 81 9 27589343 27589361 AAATGCCTCCATGAGACCC 60 27589280 27589298 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000058707 ENSRNOT00000085194 3 1 1 62 7 97969706 97969724 GAGCAGAGGGCCTAAAGAG 60 97969662 97969682 ATGGTCCCAGATTCTTCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058553 ENSRNOT00000088067 1 1 1 60 7 48027389 48027407 GAGCACAGTGAAGTATGCC 59 48027347 48027367 GATTCAATCCCACATGTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056885 ENSRNOT00000083789 2 1 1 60 7 38987899 38987920 TAATAGAGGCCATAGAGGAGAG 58 38987860 38987880 GATGCTCATAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057673 ENSRNOT00000081273 2 1 1 60 9 73881261 73881279 CAAGTGTATCAGGAGGTGG 57 73881299 73881321 AGGTCAGAACACTGAGTATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0706.2 ENSRNOG00000051046 ENSRNOT00000076677 1 1 1 106 10 70870698 70870856 CTAGGACTGACTGCCACAG 60 70870926 70870944 GAACGAAGTCTTCTCAGCG 59 Novel Rattus norvegicus 81 AABR07005939.1 ENSRNOG00000054593 ENSRNOT00000078318 1 1 1 80 1 207639358 207639379 GTGGTTTACCTGGGAAGAC 58 207639423 207639441 TCGCATTAAATCACAGCCT 58 Novel Rattus norvegicus 81 Rn60_10_0879.6 ENSRNOG00000051194 ENSRNOT00000076682 2 1 1 89 10 88077268 88077286 CTATCAACTGCTGAGGCTG 58 88076335 88077215 AGATGTACCTCTTGCAGGG 59 Novel Rattus norvegicus 81 AABR07026063.1 ENSRNOG00000052943 ENSRNOT00000083358 3 1 1 83 16 62165422 62165444 CAGTCCTTACAAGCATTAACAC 58 62165487 62165507 GCTACAAGAAAGAGTAACTGC 57 Novel Rattus norvegicus 81 AC103129.3 ENSRNOG00000055738 ENSRNOT00000077672 2 1 1 80 7 140159476 140162713 CAACTTGTTCGAGCAAGCA 59 140157784 140157804 GCTAAATGTGGTCAAATGCAG 59 Novel Rattus norvegicus 81 AABR07037487.1 ENSRNOG00000057658 ENSRNOT00000088630 2 1 1 68 X 22417814 22417832 AAGAAGTGCCTGAGGACTC 59 22417762 22417780 ACAGTAGGGTTCTCTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102554371 ENSRNOG00000042473 ENSRNOT00000064120 1 1 1 269 10 87928126 87928144 GTTGTGAGGAGTGTTGCTG 59 87927875 87927893 TTCATTTCGTCTCGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1102 ENSRNOG00000059936 ENSRNOT00000080497 1 1 1 60 7 139802653 139802672 CTTTCTCCCTCCTCTACACC 59 139802612 139802630 CGGAAGCTGTAGATGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 2 1 1 114 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624966 85624984 ACTATGTCTTTGTGGCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 2 1 1 73 X 157458858 157458877 TTCTTCTTGCAAGGGAGGG 60 157458803 157458827 GGTAAAGGGATGGATCTCTATAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036336.1 ENSRNOG00000056739 ENSRNOT00000077521 3 1 1 108 12 39021388 39021413 TTGCTTTCCTTATGTCTAGGG 58 39021298 39021317 CCGCTAATTTCTTTCTGAGC 57 Novel Rattus norvegicus 81 AABR07041247.2 ENSRNOG00000032390 ENSRNOT00000040695 2 1 1 60 X 124107572 124107592 GAGCACTACAAACATCACTGG 59 124107532 124107551 TACACCTGTAACCTGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125873.2 ENSRNOG00000060487 ENSRNOT00000077559 3 1 1 60 13 109909851 109909869 TTTGCCATGTCACAGTGAC 59 109909891 109909911 GATCCACATGAAACCTGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030911.1 ENSRNOG00000032442 ENSRNOT00000052258 2 1 1 60 10 108726352 108726370 AGGCAAGAAATTTGACCGA 58 108726310 108726331 GTCCATCTTGAAAGATTCACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058443 ENSRNOT00000088513 3 1 1 64 8 92174897 92174916 TATCCTTTGCACTTTGGCTG 59 92174943 92174961 TTTGAGGCTGAGTTTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000055883 ENSRNOT00000089208 3 1 1 60 8 49201868 49201889 AAGAAAGAAGTTAGCCTTCCCT 60 49201907 49201928 ATGTGTTAGTAAACTCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 1 1 1 81 1 262861667 262861686 CGTCAGTCACTTTACTCCCA 60 262861727 262888061 CTCTAGTACCTGTTCCTCTGAG 59 Novel Rattus norvegicus 81 SNORA25 ENSRNOG00000054457 ENSRNOT00000083866 2 1 1 60 8 13871058 13871076 ATTTCAAAGAGGGCTTGGT 57 13871100 13871118 CAATCTTTGGTCACAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000061656 ENSRNOT00000090754 3 1 1 60 8 44992079 44992099 AAACCATTCGTAGTTTCCACC 59 44992121 44992139 TCAGACATCCAAGGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000054454 ENSRNOT00000081205 2 1 1 100 8 75425217 75425235 CTCTGTATATCCGCAGGGC 60 75425299 75425317 TACCACCTCTAGAGTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060576 ENSRNOT00000091673 1 1 1 60 8 105317903 105317922 CAGTAGGTGGCAGAGTAGAG 59 105317862 105317884 CATATGTCCACAGATCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029933.1 ENSRNOG00000019814 ENSRNOT00000026813 3 1 1 80 10 60536672 60536691 CTTCTGAAGTTGTCCTGCTC 59 60536730 60536754 GAATGGAATATAGATGAGCCCTC 58 Novel Rattus norvegicus 81 AC108312.1 ENSRNOG00000053031 ENSRNOT00000078283 1 1 1 80 14 80550933 80550954 GGTCCCACCGTAATAATCTG 58 80550998 80551017 GATATAGCATTCTGCCTCCA 57 Novel Rattus norvegicus 81 AABR07056013.1 ENSRNOG00000009072 ENSRNOT00000044978 2 1 1 60 7 18280168 18280190 ACTGTCTAGTCTATGATGAAGCC 60 18280207 18280228 GCAATCTCTTGTTGAATCTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052284 ENSRNOT00000087562 1 1 1 60 8 73362426 73362446 ATTGGAACGATACAGAGAAGG 58 73362386 73362405 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060155 ENSRNOT00000085774 1 1 1 60 8 17657181 17657199 GCTGTAACATCTGACACCC 58 17657222 17657241 CCTAGCCAGTCAAATCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051411 ENSRNOT00000077608 3 1 1 60 8 70362864 70362885 TGTCACATGTGTATCAGTAGGT 59 70362825 70362843 CAGAACCCTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070926.1 ENSRNOG00000054875 ENSRNOT00000080817 1 1 1 80 8 92224992 92225015 TCTACAAATCCAGCACTAAGGA 59 92224933 92224953 GTTTCTTGCTTCTTCTAGGGT 58 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000055465 ENSRNOT00000090176 1 1 1 60 8 128808850 128808869 TGTTAGAGCTTGGAGTTGAG 57 128808890 128808910 CACACTACCTACACTTAGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059281 ENSRNOT00000079799 2 1 1 66 8 78579450 78579472 CCATACTACCCTGAACATATCTG 58 78579406 78579425 TTAAGAAAGCCCAACCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054887.1 ENSRNOG00000061217 ENSRNOT00000090602 1 1 1 80 3 173166291 173166312 CTGAATCCTTCTCAGAAGAGTC 58 173166029 173166253 CCAAATGTAGCCTATAGCACTG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053730 ENSRNOT00000078447 3 1 1 63 3 21013276 21013294 CTGAGGTGCGATTATTGCT 58 21013319 21013339 TCCTCATCTTGGAAATAAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.2 ENSRNOG00000053090 ENSRNOT00000083479 3 1 1 78 16 26592241 26592259 CTTCTTCCAGAACCCAGGG 60 26592181 26592201 TTCTAGGTCCTTCCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025896.1 ENSRNOG00000052858 ENSRNOT00000080696 1 1 1 60 16 54386642 54386662 TTCAACGGTAATGACACTCTG 58 54386683 54386702 ACTGATTCACAGAGGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.2 ENSRNOG00000055150 ENSRNOT00000078427 1 1 1 86 3 61672755 61672773 GAGGTAGACCTTCCAAGGC 60 61672686 61672706 AGACAGCATTAGCCAAACAG 59 Novel Rattus norvegicus 81 SNORD17 ENSRNOG00000052573 ENSRNOT00000077591 1 1 1 60 3 138393263 138393283 CTGGTAAGAATGGCTAGTGTC 58 138393223 138393241 TCTTGGTGAGATGGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050064 ENSRNOT00000070820 1 1 1 60 3 114919718 114919739 CCTGATCTTGTCTAATCTTGGA 57 114919679 114919699 CCTTCAGATACTCATCAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000059297 ENSRNOT00000086728 1 1 1 60 16 39146346 39146365 TACACAACTTCCCAAATCCA 57 39146388 39146406 ATCACTCCATTTCCACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051908 ENSRNOT00000092109 1 1 1 60 3 146825783 146825804 GTGTCACATGAGTATCAGTAGC 59 146825744 146825765 GAACACTCAACATAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059849 ENSRNOT00000080107 3 1 1 65 3 74710741 74710763 GGAACGATACAGAGAAGATTAGC 59 74710698 74710719 GAACACTTCACGAATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062615.1 ENSRNOG00000061521 ENSRNOT00000078708 3 1 1 88 6 74185 75597 CCACTGCAGAGATGGTCTC 60 75645 75667 AGGAGGTCACTAATCTGTTATCC 59 Novel Rattus norvegicus 81 AABR07062751.1 ENSRNOG00000055921 ENSRNOT00000083431 1 1 1 75 6 6068240 6068258 GTCTGAGAAACAGATGCCC 58 6073978 6073997 CATAGAGCATTGCAGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07046819.1 ENSRNOG00000053781 ENSRNOT00000080473 3 1 1 80 5 8047830 8047850 CACTAAGAAAGATGCATGTGC 58 8043911 8047791 AGACAGTTGTCATTTGTACTCC 58 Novel Rattus norvegicus 81 AABR07031419.1 ENSRNOG00000058992 ENSRNOT00000077144 2 1 1 82 18 13276139 13276159 TACACTTTGGACAGCATAGAG 58 13276203 13276344 AAAGAACCCATGGTCTGAG 57 Novel Rattus norvegicus 81 AABR07046961.1 ENSRNOG00000060950 ENSRNOT00000084379 3 1 1 89 5 12787121 12787141 CATTCTGACTCTATGCAACCT 58 12786835 12787074 CATTACTGTCTCTAGTAGTCCTG 57 Novel Rattus norvegicus 81 AABR07031489.1 ENSRNOG00000052389 ENSRNOT00000079756 3 1 1 81 18 15555589 15558103 GAGCAGTATCAGGTCTTTGG 58 15555527 15555545 GGGTTGAAGGATTGGTGAG 58 Novel Rattus norvegicus 81 AABR07047044.2 ENSRNOG00000060636 ENSRNOT00000090029 2 1 1 82 5 17064764 17064785 CATTAAACACCACGAGAGTCAC 60 17063418 17064721 AGCCTTGGACCTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07060593.2 ENSRNOG00000055304 ENSRNOT00000088685 2 1 1 93 4 83199051 83199069 CTATTCAGCCTAAGCTGGC 58 83199126 83210514 TTTCCTTGCTGTTCACCTG 58 Novel Rattus norvegicus 81 AABR07047054.2 ENSRNOG00000058921 ENSRNOT00000086257 1 1 1 60 5 17592634 17592654 TGAAGGATTATCTTGTCAGGC 58 17556483 17556501 TCAGGACAATAGCCAAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 2 1 1 60 14 58282728 58289709 ATTTCAGCGACATGGAAAGG 59 58289729 58289750 TATAAATTCAGTGGCCATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047103.1 ENSRNOG00000052266 ENSRNOT00000091908 1 1 1 80 5 19727955 19730869 TCAACTATACAGAGTAGGCCT 58 19727895 19727913 TTCAGAGGATCCACAGGAG 58 Novel Rattus norvegicus 81 AABR07060676.1 ENSRNOG00000060884 ENSRNOT00000084146 1 1 1 116 4 89003035 89003059 CTCTGAGACACATTCATATTTCCAG 60 89003132 89003947 GTTCTCTGTCCTTAGGCAGG 60 Novel Rattus norvegicus 81 AABR07060743.1 ENSRNOG00000051546 ENSRNOT00000088444 1 1 1 80 4 92104689 92108356 CTGTCAGAGGAAGAACGTC 58 92104627 92104647 TTTCCATCTCTAATCTCTGCC 57 Novel Rattus norvegicus 81 AABR07029878.1 ENSRNOG00000057566 ENSRNOT00000089955 3 1 1 83 10 57159321 57159339 TAAAGGACTGTTCGGTCAC 57 57152839 57152857 CTGGACTAGGATCTGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC128394.3 ENSRNOG00000059861 ENSRNOT00000087902 1 1 1 114 1 12777067 12798724 CCTTGAAGCCACGATATGC 59 12776971 12776991 ACTCACCTTCAATACACAGGG 60 Novel Rattus norvegicus 81 AABR07047309.1 ENSRNOG00000061158 ENSRNOT00000086860 3 1 1 106 5 27673678 27690326 GTTGTCAAGGCTTCTCTTCAG 59 27673592 27673611 TTACCTGAGTCTGGGAAGTG 59 Novel Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000081876 3 1 2 117 1 14938453 14938474 ATGAAGTTTAGAGATGTGGGAG 58 14938549 14945682 TCTAAGTGTCTTGAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07000533.1 ENSRNOG00000052464 ENSRNOT00000084087 1 1 1 80 1 16967773 16967794 CTTCCAATATTTCTGTGAGTGC 58 16966158 16967732 CACTAAAGCCTAACCAGCC 58 Novel Rattus norvegicus 81 AABR07072169.1 ENSRNOG00000060787 ENSRNOT00000081040 2 1 1 110 10 84718651 84718669 GATTCTTCCCTCTGGCCTC 60 84714891 84714910 GTTTGAAAGATCTCGGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061385.1 ENSRNOG00000055513 ENSRNOT00000092084 2 1 1 80 4 121085023 121088289 GACCTTTCTACATCAGTGACC 58 121088331 121088349 AGGATGCCTTCCTTAGTGG 59 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 3 1 1 66 4 121701599 121703142 CTCAATACCAGTGTGCAGG 58 121703171 121703190 ATAGACATGTCAGCTGATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 1 1 1 82 1 24073467 24073488 GGACTGATTTCCAATGAATGAC 58 24072704 24073425 AACTGTATGTGCTGTCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.8 ENSRNOG00000061458 ENSRNOT00000090210 2 1 1 174 10 93185054 93185074 CTCACAGAAGAGGAGATTGAC 58 93188126 93188147 CGTCTAGTTCAAGAATAAAGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030593.1 ENSRNOG00000058343 ENSRNOT00000082824 2 1 1 113 10 95145647 95145665 GTCTTCCTCGCTTCTACCC 60 95136046 95136065 CTATCATGAATTTGGCACGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049079.1 ENSRNOG00000053914 ENSRNOT00000077312 2 1 1 80 5 103669490 103669508 GCAGAGCTAATTGACTGCT 58 103669550 103684799 ACAGAGTCATCATCTCCTCTC 59 Novel Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 1 1 1 60 15 1152906 1161390 TGGATATCTGTAGAGATGTGGAC 59 1152868 1152886 GAACTTCTAGGTTGCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001006.1 ENSRNOG00000060323 ENSRNOT00000085639 2 1 1 84 1 32661258 32661276 CCACAGCAGCTCTACAGAG 60 32661323 32662152 GAATGTTCCAGGAAACCTGC 60 Novel Rattus norvegicus 81 AABR07030660.1 ENSRNOG00000053434 ENSRNOT00000080349 1 1 1 82 10 98177874 98188422 GAAGTATTCAGGAAAGTGTCTCTG 59 98188461 98188481 GCTTGCTATCTGTTTGTTTGC 59 Novel Rattus norvegicus 81 AABR07049111.2 ENSRNOG00000058292 ENSRNOT00000081710 3 1 1 81 5 105967276 105968050 CATTCGGTCATGAAACTGCT 59 105967214 105967232 GACAGCTTAATTCCTGCCC 59 Novel Rattus norvegicus 81 AABR07049282.1 ENSRNOG00000061020 ENSRNOT00000091898 1 1 1 80 5 113190824 113202717 AGACAGCTAGTGTTGTTATCGT 60 113190765 113190785 CAGTGTTTCTAATACCGCCAC 59 Novel Rattus norvegicus 81 AC103292.1 ENSRNOG00000055109 ENSRNOT00000087363 2 1 1 84 4 159734353 159737087 CAAGTGAAGAGCTTCCACAC 59 159734288 159734306 CCTTGGTAAAGGACCTGCT 59 Novel Rattus norvegicus 81 AC121719.1 ENSRNOG00000057875 ENSRNOT00000079525 1 1 1 60 5 118820855 118820874 AGTGCCTCTCAAGATCTACC 59 118851974 118851992 ATATCTCACCTTGCCACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062069.2 ENSRNOG00000061632 ENSRNOT00000087235 2 1 1 80 4 160343976 160343994 CCATCCCAGGAGAAGACAG 59 160341906 160343934 AGTCCTTCTGTGATCTGTAGC 59 Novel Rattus norvegicus 81 AABR07030791.1 ENSRNOG00000052940 ENSRNOT00000090488 1 1 1 60 10 104820045 104820065 AATGACACAATTCCTGCTTCC 59 104818625 104818644 GGATGCATAAGTAGAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030834.1 ENSRNOG00000052569 ENSRNOT00000080833 3 1 1 85 10 105452801 105456185 TAATTACCGACATACACTCCTG 58 105452737 105452755 CTCAGTTCTCCATCAGAGC 57 Novel Rattus norvegicus 81 AABR07017198.1 ENSRNOG00000056086 ENSRNOT00000091492 3 1 1 80 15 17264612 17265777 GGTTCAGGTGAATCAGACAC 59 17265820 17265838 ATTGTCCTTCCGGGATGAC 60 Novel Rattus norvegicus 81 AABR07030880.1 ENSRNOG00000057341 ENSRNOT00000078771 3 1 1 82 10 107900930 107900948 GGAAGCAGACCTTCCTCTC 60 107902154 107902172 GAATTCGTCCTGGCTAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001207.1 ENSRNOG00000054466 ENSRNOT00000082710 3 1 1 172 1 38830151 38835275 CTGCAGTGCAGAGATTCAC 59 38829997 38830016 AAGGTGCTGTAGAAACTCCA 59 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 2 1 1 91 10 108728498 108728516 TCTACACCCAACAAGCTGG 60 108726671 108728444 TAATTCTCCACCAGCAGACC 60 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 3 1 1 93 10 108728499 108728517 CTCTACACCCAACAAGCTG 58 108726670 108728443 GTAATTCTCCACCAGCAGAC 58 Novel Rattus norvegicus 81 AABR07017266.1 ENSRNOG00000051924 ENSRNOT00000080450 2 1 1 80 15 20232182 20232200 CGTTTCACAAGACCTCAGG 59 20232244 20232992 AAGTTAAGGTAAGGCCGCA 59 Novel Rattus norvegicus 81 AABR07017491.1 ENSRNOG00000059269 ENSRNOT00000079751 1 1 1 81 15 23381797 23381816 CATTTCACCTCCCAGTTTCC 59 23381859 23382066 AGATCATCAAGCCCTCTGTC 59 Novel Rattus norvegicus 81 AABR07001444.1 ENSRNOG00000057561 ENSRNOT00000086762 2 1 1 83 1 44201796 44227775 GAAGGTGGAGGGACTAGAG 58 44227822 44227840 ATGATCAGATGCCAATGGG 58 Novel Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 2 1 1 63 18 21111549 21111568 GTTTGGTGGAACTGTGACAG 59 21111591 21113414 CTCTAAGTCATTTGTTTCACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 3 1 1 64 18 21111548 21111566 GGTTTGGTGGAACTGTGAC 59 21111591 21113414 CTCTAAGTCATTTGTTTCACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001455.1 ENSRNOG00000053507 ENSRNOT00000088141 2 1 1 80 1 45621416 45622042 GACTCATGATTTCGTGAGTCC 59 45622083 45622102 TGTCCACAAATTCGATGCAG 59 Novel Rattus norvegicus 81 AABR07031604.1 ENSRNOG00000051421 ENSRNOT00000090746 3 1 1 82 18 21896652 21915012 CTAAGACTGAGCACCAGCT 59 21915057 21915076 TCAATAGAGGTGGGTGTCAG 59 Novel Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 3 1 1 117 5 133890144 133892881 TCCCACCTTGTTTCACAGG 60 133890045 133890064 CAGTGATCCTCCTGTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031665.1 ENSRNOG00000061811 ENSRNOT00000085143 2 1 1 98 18 24290777 24293911 ACATGTATGTGCAGGAGCA 59 24293973 24293991 TACGGGAATGAAACGACCC 60 Novel Rattus norvegicus 81 AABR07017818.1 ENSRNOG00000051907 ENSRNOT00000082274 1 1 1 81 15 31351916 31351937 AAGACCACTTTCTAGATGACAC 58 31351979 31352104 GAGTCCTTCCGAGTAGGAG 58 Novel Rattus norvegicus 81 AABR07062885.1 ENSRNOG00000053520 ENSRNOT00000077939 3 1 1 108 6 12717234 12718124 AAATAACAAGCTGTGGCCC 59 12718194 12718214 GTTAGACACGCTAGTCAATGC 60 Novel Rattus norvegicus 81 AABR07001594.1 ENSRNOG00000051553 ENSRNOT00000089898 1 1 1 97 1 54062464 54063362 AAGTGGACAAAGAGGACGG 60 54063423 54063441 AATCCCTGATGCCACAGAG 60 Novel Rattus norvegicus 81 AABR07031788.1 ENSRNOG00000057104 ENSRNOT00000082887 1 1 1 92 18 34899239 34899257 GTGTCTAGAGGCAGGAAGG 59 34899312 34911961 ACTGTTGCATTTCATTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 2 1 1 65 5 143851531 143851550 GACAGAAGGATCCAGAAGAC 57 143851577 143852415 TTTACTGGTAAGGCAGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018059.1 ENSRNOG00000053491 ENSRNOT00000082495 2 1 1 82 15 37995481 38006319 GTGAGCAAAGTTCCTCTAGC 59 38006364 38006382 GAGCCTCCTGTTGTATCCT 59 Novel Rattus norvegicus 81 AABR07018064.1 ENSRNOG00000061921 ENSRNOT00000089924 1 1 1 80 15 38338431 38338450 GGTGGCTTTGCTTTCTAGAC 59 38338162 38338390 AAGTGACAGATGCTATCCCAG 60 Novel Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 2 1 1 74 15 40480839 40481467 TTCAATTCCTTCTGCTCGT 57 40481505 40481523 TTGTCTTCCATGTCACTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018119.2 ENSRNOG00000056083 ENSRNOT00000081111 2 1 1 80 15 40792183 40792959 AATGAAGTTTCAAGGACCTGG 59 40792123 40792141 GTAAGCAAGTGACGGTTCC 59 Novel Rattus norvegicus 81 AC118963.3 ENSRNOG00000057705 ENSRNOT00000085459 3 1 1 89 5 151669100 151673663 TTGCTAAGTGGCTCAATCC 58 151673716 151673734 CATGGAGTCAGCCTAACCT 59 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 2 1 2 80 18 50434573 50435152 AATTGTTTGCCTAATGCTCCTC 60 50434514 50434532 AGTCTCAGGAATGTCTGGC 59 Novel Rattus norvegicus 81 AC132635.1 ENSRNOG00000061631 ENSRNOT00000089689 1 1 1 87 15 43742819 43742837 TCCCGAATGCTTGACTCTC 60 43742885 43746856 TGGTCACATACTTTGATCTCCT 59 Novel Rattus norvegicus 81 AABR07050146.1 ENSRNOG00000054630 ENSRNOT00000077685 3 1 1 110 5 153403785 153403803 TGGTTTCGCTTTCTTCCCA 60 153403597 153403615 TCTCTAGGACCTGGGACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 3 1 1 69 6 36731313 36731332 TACATATCATCAGTGCCGGG 60 36729864 36731282 TTCATCTGTGAGGTGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001942.1 ENSRNOG00000055124 ENSRNOT00000082759 3 1 1 82 1 62532647 62532666 TGGATCTTGCTCAAAGAGGA 59 62507520 62532602 GCCACATGCATCCTTAAGC 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 1 1 1 60 1 64235372 64236934 GTCACTAAGCAGACACAGG 58 64236956 64236976 GCTTTGACCAATGATTCATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 1 1 1 86 5 161523027 161523046 CATTCATACAGGGACATCCC 58 161523095 161524687 TACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 3 1 1 87 5 161523027 161523046 CATTCATACAGGGACATCCC 58 161523095 161524688 ATACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AABR07032277.1 ENSRNOG00000054651 ENSRNOT00000091806 3 1 1 81 18 59489731 59492162 CAGGATCTCCCTCTGTGAG 59 59492207 59492225 TCCTACGTGTGCATCTTCC 60 Novel Rattus norvegicus 81 AABR07002382.1 ENSRNOG00000058893 ENSRNOT00000083875 3 1 1 80 1 72260553 72260575 TTCTAGAAGAACCAGTGAGAGTG 60 72259158 72260515 ATAGGGAATGAATTCCCACCA 59 Novel Rattus norvegicus 81 AABR07018459.1 ENSRNOG00000057847 ENSRNOT00000086871 2 1 1 82 15 58834577 58834596 GCCAAGACTGTGGTATTCAG 59 58834640 58834847 TTCTCCGTCATTCTTCTCCT 58 Novel Rattus norvegicus 81 AABR07063742.1 ENSRNOG00000052993 ENSRNOT00000091474 3 1 1 84 6 45133757 45133775 CATCTCACAGTTTGGGCAC 59 45133950 45133968 GTCAGTGAGTCCATCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063743.1 ENSRNOG00000051468 ENSRNOT00000091185 2 1 1 80 6 45384351 45389177 TTCCTAGGATGCAGAATTCC 57 45384290 45384308 CCTTCCAGAAACATCCCAG 58 Novel Rattus norvegicus 81 AABR07018503.1 ENSRNOG00000057305 ENSRNOT00000086501 2 1 1 80 15 62239270 62240242 TGTTTGAACAAGGACGATAGTG 59 62240281 62240301 GAGTGGTAGTAAGACCTCAGG 59 Novel Rattus norvegicus 81 AC130035.2 ENSRNOG00000055931 ENSRNOT00000079780 1 1 1 102 5 172891806 172891824 CTGCCCTCAGATAAGAGGG 59 172891178 172891198 GTTTCCAGGATACAGATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 3 1 1 67 18 67748230 67748251 AATGTCACTCCTGTCATTTGTC 59 67695169 67748202 TCTGGACTCAAGATGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063804.1 ENSRNOG00000054273 ENSRNOT00000077239 1 1 1 103 6 49617417 49617436 GCTACCTTTGTCTCCATGGA 60 49617502 49617899 GTAGTTCATCTGGCCCTGG 60 Novel Rattus norvegicus 81 AABR07032520.2 ENSRNOG00000052705 ENSRNOT00000082939 2 1 1 107 18 69876151 69879802 GTTTGGAAAGACTGAGCAGAG 59 69876064 69876082 TTCTCCAAACCTCTGAGCC 59 Novel Rattus norvegicus 81 AABR07063811.1 ENSRNOG00000053737 ENSRNOT00000082540 2 1 1 80 6 50285156 50287624 AACTGTTCACTAAGGCCTG 57 50285094 50285113 ACATCAGTCTTCCACTTTCC 58 Novel Rattus norvegicus 81 AABR07051250.1 ENSRNOG00000057532 ENSRNOT00000078344 1 1 1 81 3 3478021 3478041 AGGGAGAACTCATCCATTCTC 59 3478084 3482193 CCATTTCTCCAGATGGGCA 60 Novel Rattus norvegicus 81 AABR07032593.1 ENSRNOG00000052987 ENSRNOT00000079714 1 1 1 60 18 72921500 72921518 CTTATCTCCCAGGGAGACG 59 72920715 72920733 CATTGAAACATCCCAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019088.1 ENSRNOG00000057291 ENSRNOT00000084024 3 1 1 82 15 87558248 87558266 CTGTCACTAGCACCTTGCT 60 87558309 87561113 TGAGATCTTCAGATCAAGGCTC 60 Novel Rattus norvegicus 81 AABR07032621.1 ENSRNOG00000054472 ENSRNOT00000086452 2 1 1 77 18 73981156 73981177 CAAACAGATAACAGGAAGAGGG 59 73971654 73971672 TTTCCGGAGGACTCATCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 3 1 1 111 18 78944655 78944674 TTACAAGATACACCCAGGCA 59 78941247 78944581 GAGAAAGGTAACCGTTCCC 58 Novel Rattus norvegicus 81 AABR07002923.1 ENSRNOG00000055794 ENSRNOT00000087815 2 1 1 61 1 89628028 89628046 GACTTCCCTGAGTCTTGCA 59 89629746 89629764 TGTTGCACATGAACGATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019254.2 ENSRNOG00000060194 ENSRNOT00000079870 1 1 1 80 15 96817445 96817466 AATAAAGGCAGAGTCTGTTGAC 59 96790503 96817407 TAGCTGGAGGGATCTATAGAGG 60 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 3 1 1 60 15 97420746 97421803 AAGATATGTAGGCCTCCTGAG 59 97421822 97421843 ATGTAGGGATGTTACTTACTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032786.1 ENSRNOG00000057629 ENSRNOT00000079901 3 1 1 62 18 82063602 82063620 GAGTAGCAGGTTCATGTGC 59 82077306 82077324 TTGGCGATGTTCTCATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 2 1 1 60 6 87874932 87874951 AAATGGCAACTTCATCTCCG 59 87871432 87871452 TTAGAAGCTTGAGATCACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032834.1 ENSRNOG00000057899 ENSRNOT00000088704 1 1 1 80 18 85003641 85067854 AAGAATGGGCAGGAGATCAC 60 85003580 85003598 TCTGAGGCAGAACAATGGG 60 Novel Rattus norvegicus 81 AABR07051646.1 ENSRNOG00000058261 ENSRNOT00000080399 2 1 1 80 3 18653581 18653602 TCTCCTAAGTTCATTTCCTCAC 58 18653643 18654026 CATTGGTTCCCAGAATCCA 57 Novel Rattus norvegicus 81 AABR07019443.1 ENSRNOG00000061313 ENSRNOT00000086918 3 1 1 62 15 105989068 105989088 ATGACATATCTTCGCTGAGGT 59 105986914 105989044 TCTAGCTGGGAGAGTCCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07065042.1 ENSRNOG00000054814 ENSRNOT00000084962 3 1 1 80 6 105316307 105317327 GAGGTTGGAGACAGTTTCAG 58 105317368 105317388 AAAGACGTAAGGATCAGTGGA 59 Novel Rattus norvegicus 81 AABR07020736.1 ENSRNOG00000052801 ENSRNOT00000079817 2 1 1 63 13 37139730 37139748 AGAGAAACAAGGAGGGCAC 60 37138099 37138119 TCTGATTCTTCCCACAGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000080210 3 1 2 71 1 104287507 104287525 AAGAGAAAGCCCGTCACTC 60 104352005 104352024 GTTTCTAGTCCCTGGAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020859.1 ENSRNOG00000056388 ENSRNOT00000089001 1 1 1 80 13 43748994 43749014 CTGGTAAGACATGAGAAGCAC 59 43749053 43773098 CAGCTTCTCCCTTACTATTCTC 58 Novel Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 2 1 1 121 3 33946882 33949984 GATGCTCAAGAGTCCCAGG 60 33946779 33946798 TTATATGAGCAGTCTCGGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020979.1 ENSRNOG00000060611 ENSRNOT00000090709 3 1 1 89 13 49965986 49970698 TCACATTCAAACAGGTGCT 58 49965915 49965936 CCTCTTGAACAAAGTTTGTAGC 58 Novel Rattus norvegicus 81 AABR07052085.2 ENSRNOG00000052827 ENSRNOT00000080064 2 1 1 80 3 35805050 35808096 TTGCTATAAAGGAGAAGACCC 57 35808136 35808156 TTGCCAGTAGTCTATAGTGGT 58 Novel Rattus norvegicus 81 AABR07003390.1 ENSRNOG00000056901 ENSRNOT00000082223 1 1 1 94 1 108549217 108554617 CGGGTGGATTCATAATTGGA 58 108549142 108549160 TGTTTGTGGGAATGGAACC 58 Novel Rattus norvegicus 81 AC113858.2 ENSRNOG00000056496 ENSRNOT00000086817 2 1 1 81 13 68878643 68883016 AGGGCTTAGTGTCAGAGGA 60 68883061 68883079 TTCTATGGCATGGTGGGAG 59 Novel Rattus norvegicus 81 AABR07033921.1 ENSRNOG00000059392 ENSRNOT00000078626 2 1 1 102 11 44490005 44501276 GAATCTCTTGAGACGTCCG 58 44501342 44501360 TCAGAATGGCTACGGAGAG 59 Novel Rattus norvegicus 81 AABR07033980.1 ENSRNOG00000055992 ENSRNOT00000081169 2 1 1 80 11 46870207 46870226 ATGATGCAGCGAGTATTCAG 58 46870268 46876412 AAGATCTCCATCCTCATCCT 57 Novel Rattus norvegicus 81 AABR07021430.1 ENSRNOG00000051975 ENSRNOT00000077264 3 1 1 80 13 71444372 71444391 ATGACCGACGTTAAAGGGAG 60 71441225 71444331 TTTCATCCTCTTGTCTTTGGC 59 Novel Rattus norvegicus 81 AABR07052549.1 ENSRNOG00000055699 ENSRNOT00000091918 1 1 1 110 3 60911853 60911871 GGAGGAAGAGTCAGTTGGA 58 60911190 60911779 GAGAGGCATCTGTTTGTGG 59 Novel Rattus norvegicus 81 AABR07052550.2 ENSRNOG00000051639 ENSRNOT00000089819 3 1 1 83 3 61093130 61099465 GGAAGAGAATGAATTTGAAGGC 58 61093068 61093089 GCTCTTCCATAGACTTCAACTC 59 Novel Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 3 1 1 61 13 80457750 80460440 TTCAGATCCGATGGAGGAC 59 80457707 80457728 GCCATAGAGATACTAGGAGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034457.1 ENSRNOG00000057765 ENSRNOT00000081844 2 1 1 75 11 72625589 72625607 TCACTTAAAGCCTTGGCAG 58 72639207 72639227 GGACTTGTATTTGTAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034550.1 ENSRNOG00000056641 ENSRNOT00000082937 1 1 1 140 11 76634537 76636984 GAAAGCAGAACATGAGTTCAG 58 76644337 76644358 GAGCTCCATAGTAGACTTTCTG 58 Novel Rattus norvegicus 81 AC094636.1 ENSRNOG00000059578 ENSRNOT00000078881 3 1 1 88 6 127591693 127591711 GAGGTCTTCAGCAAGGAGG 60 127591007 127591026 GTCAGTACAGTCTTGTGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021717.1 ENSRNOG00000057638 ENSRNOT00000090606 2 1 1 94 13 87438520 87442514 CAGGATACAGACTGAGGCTG 60 87442571 87442589 CCACCAGTCCTTGATCTGG 60 Novel Rattus norvegicus 81 AABR07034573.1 ENSRNOG00000051670 ENSRNOT00000087988 2 1 1 60 11 79133877 79133897 CAGAAACATCCTAGCAGAGTC 58 79134103 79134124 GCATGTATAATTTCTCCTGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07034586.1 ENSRNOG00000053105 ENSRNOT00000079686 1 1 1 80 11 80056621 80057060 ATCCTGAGAGCTTCTCCAG 58 80057104 80057122 TAGCTCATCTGACTCCAGC 59 Novel Rattus norvegicus 81 AABR07004100.1 ENSRNOG00000057921 ENSRNOT00000081060 3 1 1 81 1 124743487 124756084 TACAGGACTTTGATATAGGCCT 58 124743427 124743448 TGTAATCTTAGCACTTGGAAGG 58 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 3 1 1 100 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949466 129951203 TTGGTGAAGAGCTTGTGGT 60 Novel Rattus norvegicus 81 AABR07052697.1 ENSRNOG00000056417 ENSRNOT00000090069 2 1 1 80 3 69694832 69694850 ATAACAGACCTCTGCTGCT 58 69694894 69760833 TCCTACATGTGGATCACGT 58 Novel Rattus norvegicus 81 AABR07004189.1 ENSRNOG00000056064 ENSRNOT00000089979 3 1 1 80 1 129531122 129531142 TATTTGGAGGTGGAATGAAGG 58 129531469 129544594 CTTGTCTCCTCTTTCTTGCA 58 Novel Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 2 2 2 87 6 133668570 133676831 TGGAATAGGCCAACATCGT 59 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 1 1 1 80 6 136942519 136942540 GGTGATTCTGTCTTTGTTAAGG 57 136942580 136942759 CATCCTAGAAGTTGCTGGAC 58 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000092216 1 1 2 81 3 83134273 83134291 GACTACCCAAGGGAGACAG 59 83111299 83134233 CTTATGAAACCTGGAAATCCTGAG 60 Novel Rattus norvegicus 81 AABR07065766.1 ENSRNOG00000054462 ENSRNOT00000080005 3 1 1 104 6 140400189 140400292 TTTCCAATCAGTGTCCTGTC 58 140400104 140400122 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07065815.2 ENSRNOG00000056934 ENSRNOT00000088727 1 1 1 80 6 142602030 142602130 TAGCTGCAGGTGTCTACTC 59 142601968 142601986 ACAACTTCACTGAAGCACC 58 Novel Rattus norvegicus 81 AABR07035190.1 ENSRNOG00000061668 ENSRNOT00000084891 2 1 1 80 12 6544699 6550538 CTATAACCGGACAGACTGAC 57 6550581 6550599 AGCAAAGTTCAGAAGGGTC 58 Novel Rattus norvegicus 81 AC135766.1 ENSRNOG00000053578 ENSRNOT00000083972 3 1 1 106 12 7594375 7594395 TCTACCACTGAGCTAAATCCC 59 7589958 7594307 ACTTCCAGTCCTGTTCTGG 59 Novel Rattus norvegicus 81 AABR07004397.2 ENSRNOG00000054325 ENSRNOT00000077093 2 1 1 86 1 141209968 141209988 CAAATCCTTCCTGAATCTGGA 58 141209717 141209920 CTCTGACTGGCTTCTTCAG 58 Novel Rattus norvegicus 81 AABR07065895.1 ENSRNOG00000055113 ENSRNOT00000085086 1 1 1 85 6 143879858 143879960 AGTCCCTGCATATGTCCTG 59 143879791 143879809 AAGTCAGACTGAGGGTCTG 58 Novel Rattus norvegicus 81 AABR07053480.1 ENSRNOG00000057230 ENSRNOT00000087561 3 1 1 96 3 109388065 109400375 GGTGGAGTCCAGAGTACAC 59 109400433 109400453 GGCTCATAACATGATCTGTGC 60 Novel Rattus norvegicus 81 AABR07053481.1 ENSRNOG00000058370 ENSRNOT00000078988 2 1 1 80 3 109582026 109582044 AGAGACCCAGATTCGAGGT 60 109581542 109581983 GCTCCTGAAACTGGTTTGAC 60 Novel Rattus norvegicus 81 AABR07053516.2 ENSRNOG00000060187 ENSRNOT00000077223 3 1 1 67 3 112330370 112330388 AGAAGTGAACAACGGACAC 58 112333356 112333377 CGTTAGAAGCTTAAGAGTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066736.1 ENSRNOG00000053883 ENSRNOT00000077449 2 1 1 83 9 13737716 13739317 TTCCGATATAAAGCTCACGG 58 13737652 13737670 CAGAATGGAAGTCTGGGTG 58 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000092035 3 1 2 211 12 21778197 21778215 CAGATGTCTGCGTTTGGTG 60 21778561 21778700 AAGGGATTGGTGAAGGCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07066829.1 ENSRNOG00000054111 ENSRNOT00000080385 2 1 1 91 9 18206900 18206919 CCTGCATTGTATTAGGGTCG 59 18206973 18209219 TTCTTCGGCATCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07053717.2 ENSRNOG00000058520 ENSRNOT00000087780 1 1 1 80 3 122394595 122394613 GGTTCAGTTTCACAGTCGG 59 122393045 122394552 CAGAAGAGGACCTGTATCCA 58 Novel Rattus norvegicus 81 AABR07053717.2 ENSRNOG00000058520 ENSRNOT00000087780 3 1 1 80 3 122393052 122394558 GGCTGATGGATACAGGTCC 60 122392990 122393008 CTCCTCCTGGATCCAAGAC 59 Novel Rattus norvegicus 81 AABR07053771.2 ENSRNOG00000057381 ENSRNOT00000079791 1 1 1 80 3 125230147 125247188 TCAACTTAAATGCCACTTGGG 59 125247230 125247248 CCATCTCTGTACAGGGCAC 60 Novel Rattus norvegicus 81 AABR07066871.1 ENSRNOG00000052332 ENSRNOT00000091769 1 1 1 87 9 20463863 20463887 GGTTTCTTAGACCAATAACTGAGAG 59 20463931 20466460 AGGTCAGCTTCAAGAGACTC 59 Novel Rattus norvegicus 81 AABR07053782.1 ENSRNOG00000056616 ENSRNOT00000081821 1 1 1 82 3 125775927 125775948 CTGAAGATTCACAGAAATGGTG 58 125775991 125777213 TTTCTGCTGAGACATTGGC 59 Novel Rattus norvegicus 81 AABR07035802.1 ENSRNOG00000052918 ENSRNOT00000078493 1 1 1 81 12 22796226 22796244 GCAGCACCTCTACAATGGA 60 22792784 22796184 GAAGATTCAAATGTGGTCCAGG 60 Novel Rattus norvegicus 81 AABR07053870.1 ENSRNOG00000058774 ENSRNOT00000086934 3 1 1 81 3 131609591 131609609 AGAACATCTGACACCAGCC 60 131609652 131639446 GTGTCAATTTCTCTGTCTGCC 60 Novel Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 1 1 1 60 9 29403362 29403381 GAGGCCATCTTGTAATGGAG 58 29403404 29454653 CCCTGTTAGAATGCCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054025.1 ENSRNOG00000052276 ENSRNOT00000085307 3 1 1 81 3 136596732 136596750 CAAATCTCCTTCTCCCAGG 57 136596227 136596687 AAGTTGTCAGTCCAGTCCT 58 Novel Rattus norvegicus 81 AABR07036010.1 ENSRNOG00000060882 ENSRNOT00000090466 2 1 1 100 12 30502262 30509630 GAGGTTTCCCAGGGATCAG 60 30509694 30509712 GTTTAATCCCAGCACTCGG 59 Novel Rattus norvegicus 81 AC136867.1 ENSRNOG00000055554 ENSRNOT00000083571 3 1 1 84 12 31299108 31299637 TATCTGAAGCGAGCTGATCC 60 31299683 31299702 AGACAAGACAGGATGCTCTG 60 Novel Rattus norvegicus 81 AABR07005596.1 ENSRNOG00000059503 ENSRNOT00000091780 2 1 1 64 1 189798281 189798299 GTCAAGAATCGGACTCCTC 57 189819341 189819359 TGTAGTCTAGCCTGTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.3 ENSRNOG00000061665 ENSRNOT00000086476 1 1 1 119 12 33693466 33693487 AGACAAAGAGACTGAGACAGAG 59 33693567 33694568 ATGAGCACCATAGGTCCTG 59 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 1 1 1 62 3 149259512 149259530 CGCCTAGGACTACAGTGAG 59 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005837.2 ENSRNOG00000054093 ENSRNOT00000091587 2 1 1 80 1 202712650 202714397 ATCATCTGTAAGCAGGCCC 60 202712588 202712610 AGCCATAACCAGAAAGACTAGAG 60 Novel Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 2 1 1 63 16 64877669 64877688 CAGAATGGATGTCAACGCAG 60 64877714 64878377 CTCTTCTGAATGCTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 2 1 1 61 16 64923466 64924520 TTCACTGACTGTCAGCAGG 60 64923423 64923446 CCAACAGGATTAGTAAATACCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036442.1 ENSRNOG00000051935 ENSRNOT00000088427 1 1 1 68 12 43321022 43321040 GATTGATGAGGCCACAGGA 60 43321072 43323426 TTGAGTGTCACAGGGACTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07054562.1 ENSRNOG00000053747 ENSRNOT00000078224 3 1 1 88 3 160585253 160585271 GATGGATGGTCACAAGGTG 58 160585323 160587013 TCCCTAGGATTGGCTAGAG 57 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 1 1 1 87 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398594 210398613 ACTGTACTTTCGGAGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC113785.3 ENSRNOG00000060104 ENSRNOT00000078332 2 1 1 81 16 69029567 69029586 TCGCCAAGTTGACATTTGAG 59 69029628 69030434 GCCAAATAGGTGTCCATTACG 60 Novel Rattus norvegicus 81 AABR07036514.1 ENSRNOG00000057122 ENSRNOT00000081685 3 1 1 103 12 45941031 45941437 GACCAGAGATTCTTTCCCAG 58 45941502 45941521 TTTCTGTCTCTTCGCTTTCG 59 Novel Rattus norvegicus 81 AC097575.2 ENSRNOG00000060790 ENSRNOT00000079447 1 1 1 60 12 46859494 46859512 TTCACCAGTACCTGCAGAG 59 46858336 46858354 GAGATAGTTCCCGGGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102552829 ENSRNOG00000052879 ENSRNOT00000084277 1 1 1 89 16 71402890 71402908 TAGATGCCAGCCATCTGTC 59 71402957 71406138 CAAGAATTCTTTCCTCTGCTCTC 60 Novel Rattus norvegicus 81 AC141169.2 ENSRNOG00000059041 ENSRNOT00000080464 3 1 1 80 9 69896441 69896459 ATCAACCTCAGAGAAGGCC 59 69896497 69899647 TATGAAGAGTACCTCCTCAATACAG 59 Novel Rattus norvegicus 81 AABR07026361.1 ENSRNOG00000053572 ENSRNOT00000089518 3 1 1 82 16 74061966 74061984 TGTGTTCCTGTCTGACCTG 59 74060940 74061920 CTTGGACCAGTAGGAACCC 59 Novel Rattus norvegicus 81 AABR07054752.2 ENSRNOG00000056980 ENSRNOT00000086486 3 1 1 80 3 168634407 168634427 CCTTGGCTCCATAAATTACCG 59 168623830 168634366 AGAAGAAACTGGGACACCTG 60 Novel Rattus norvegicus 81 AABR07026473.1 ENSRNOG00000057840 ENSRNOT00000085640 1 1 1 94 16 77995695 78013010 TCCTTTCTGCAGAGCTGAG 59 78013068 78013086 TGTTGTCGTACTCTGAGGG 59 Novel Rattus norvegicus 81 AABR07068066.2 ENSRNOG00000056522 ENSRNOT00000089903 1 1 1 92 9 80669256 80669275 TTTCCCTTCTAGATCCAGGA 57 80666961 80669201 AAACATGGACTGTAGGGTG 57 Novel Rattus norvegicus 81 AABR07068086.1 ENSRNOG00000055414 ENSRNOT00000088698 3 1 1 81 9 83313378 83313399 CCATGAAAGGGAAATTCTTGTC 58 83311869 83313338 AACTTCCTTGGAGTTTAGTGG 58 Novel Rattus norvegicus 81 AABR07026509.1 ENSRNOG00000061179 ENSRNOT00000083285 2 1 1 81 16 79816811 79817084 ATCCACCCTCTACCTACAGG 60 79817128 79817146 CCTGGACTGACTATGCAGG 60 Novel Rattus norvegicus 81 AABR07006475.1 ENSRNOG00000058389 ENSRNOT00000088585 1 1 1 246 1 236547632 236547650 AATCCTTCCGGGAACACTG 60 236577319 236577337 TGATGACATGTCCCAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068212.1 ENSRNOG00000059666 ENSRNOT00000085860 3 1 1 83 9 90934228 90934251 CAGGACTGTACAAAGGATAAATGG 60 90934293 90936962 GGACTGTAGGATGCTTCCC 60 Novel Rattus norvegicus 81 AC127756.1 ENSRNOG00000051474 ENSRNOT00000092096 3 1 1 87 16 82183571 82183589 CTGAGATTCAACGCCTCTG 58 82179818 82183523 GTGATTCAGACCTAGAAACCTG 59 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 2 1 1 85 X 65111798 65111816 TTTAACTTTCTGCTGCCCT 57 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006566.1 ENSRNOG00000057279 ENSRNOT00000088105 1 1 1 80 1 240340844 240340864 ATGGAATTCTCAGATGACCAC 58 240340635 240340802 GCCTCAACGTCTATACCTG 57 Novel Rattus norvegicus 81 AABR07026565.1 ENSRNOG00000056874 ENSRNOT00000090339 1 1 1 80 16 83795319 83798630 TCCTCCTGCGAGATTATAGAG 58 83795259 83795277 TGTCAGGCAACCAAATCAC 59 Novel Rattus norvegicus 81 AABR07039139.2 ENSRNOG00000052595 ENSRNOT00000077149 3 1 1 100 X 69207716 69207735 GGAATAACCATTGGTGGCTG 59 69212239 69212257 CTCTTCTGGTGGGTTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 2 1 1 74 1 244877738 244907923 TTGCAGAATCCTCCCAGTG 60 244907961 244907979 ATCTGTTCTCTGCCTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039236.1 ENSRNOG00000059710 ENSRNOT00000082144 3 1 1 80 X 72863009 72863029 GGAATATTACGATTGCGACGG 60 72859441 72862970 ATCTTCTACACCATCTCCATGG 60 Novel Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922,ENSRNOT00000084598 3 2 2 83 16 87443296 87443316 CGTAATGCATCATCACATGCT 60 87443361 87470791 TGGAGGCAAATCTCAGGTG 60 Novel Rattus norvegicus 81 AABR07026991.1 ENSRNOG00000056027 ENSRNOT00000084252 1 1 1 80 17 8782117 8783343 CTCAGCAGAGACAAGTCAC 58 8783387 8783405 TTAGGGTCAGGAGACTCAC 58 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 3 1 1 62 7 28372131 28372312 TGAAGGTTGACGACCTCTC 59 28372338 28372356 TGCTCACAAGATCTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027022.2 ENSRNOG00000060239 ENSRNOT00000078774 3 1 1 91 17 11208838 11208856 ATTCTTCCCACTGTCTCCC 59 11208911 11211334 AGTTCCCTCATCTAGGAGC 58 Novel Rattus norvegicus 81 AC105485.1 ENSRNOG00000054628 ENSRNOT00000082293 3 1 1 82 1 264940477 264940500 TTCTGTGTAGAAAGTTCTAGGAGG 60 264940540 264940696 GCAGAAGATGAAGCCATCTC 59 Novel Rattus norvegicus 81 AABR07069211.1 ENSRNOG00000054478 ENSRNOT00000083731 3 1 1 71 8 12459038 12459056 ATGCCCAGACTGTTCAGAC 60 12457447 12457467 TTACTTCTTGGAAGCTCAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC096311.1 ENSRNOG00000052225 ENSRNOT00000088181 2 1 1 111 1 267466120 267466140 CCTCATTTCAACAGGAATCCC 59 267464196 267466047 TATGAGGGTGACCTTGGTG 59 Novel Rattus norvegicus 81 AABR07072065.2 ENSRNOG00000057355 ENSRNOT00000084208 1 1 1 80 1 269055863 269055882 CTACATCACCTTAAGGGCTG 58 269080171 269080682 AAGAAGGACGGATACTGGA 57 Novel Rattus norvegicus 81 AABR07006904.1 ENSRNOG00000055137 ENSRNOT00000078951 3 1 1 80 1 270475853 270478936 ATTCTCTGGCTTCCCTTTAGAG 60 270475794 270475814 AGAAATTCCTCCAGGAAAGGA 59 Novel Rattus norvegicus 81 AABR07073303.1 ENSRNOG00000055879 ENSRNOT00000088546 1 1 1 80 7 54740586 54740604 ACAGAGGACATGGAAGAGG 58 54740645 54741723 CAGATCTTAAGCAGCATCTCTG 59 Novel Rattus norvegicus 81 AABR07057116.1 ENSRNOG00000060210 ENSRNOT00000089822 2 1 1 81 7 56242964 56242986 CGACATGTATGCAGTACATAAGG 60 56291800 56291818 TCTTCCCATCCAACTTCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043106.1 ENSRNOG00000052466 ENSRNOT00000082702 1 1 1 80 19 21366265 21368329 CAGTAACAAGTGTCCAGATGTC 59 21366206 21366224 CAAGTAGGAGGCCTAGGTG 59 Novel Rattus norvegicus 81 AC115255.1 ENSRNOG00000052176 ENSRNOT00000084663 1 1 1 80 1 274135151 274135169 CAACTAAACCACAAGGCCA 58 274133639 274135108 TAGGCTCTAAAGCATTCCGT 59 Novel Rattus norvegicus 81 AABR07069588.1 ENSRNOG00000054853 ENSRNOT00000089148 2 1 1 80 8 32737968 32741178 TTAATTCACCCAGTTGGTTGG 59 32741218 32741238 GTCATTCAGAAGAGTCCTTGG 59 Novel Rattus norvegicus 81 AABR07027501.1 ENSRNOG00000055736 ENSRNOT00000090118 1 1 1 80 17 34542354 34546151 AACAGAAAGGCTAGCTTCCT 59 34542293 34542313 AGTGCATGTTCTTCAGAATGG 59 Novel Rattus norvegicus 81 AABR07027526.1 ENSRNOG00000052525 ENSRNOT00000083869 2 1 1 140 17 35532582 35542281 GGATGGATGAGAGCAGGAC 60 35542383 35542403 CCAGGAATTTACTCGTCAGGA 60 Novel Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 1 1 1 72 8 40036750 40036768 TCTTACGACGGAACTGTCG 60 40034221 40036714 GTTGATTCACCGCAAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069816.1 ENSRNOG00000052868 ENSRNOT00000086487 2 1 1 89 8 40855281 40855300 GACTGGAGTGAGGGAATCTC 59 40795822 40855229 GTCAGTCTCCCATCCTTCC 59 Novel Rattus norvegicus 81 AABR07057443.2 ENSRNOG00000059258 ENSRNOT00000078256 1 1 1 80 7 71502094 71503862 AATCATTCCTGAACACAGCG 59 71503905 71503923 TTTGTTCCTGTGTCCCTCC 60 Novel Rattus norvegicus 81 AABR07027692.1 ENSRNOG00000059534 ENSRNOT00000077648 1 1 1 114 17 40857371 40857389 TAGACAGGACACATGGGAC 58 40854165 40857295 CCATTCTCCAGAAATCATGGG 59 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 1 2 3 80 10 15261 15279 CAAGCTGAAACCAGAAACC 57 13174 15219 AAACTTCTCCTTCACAGACTC 58 Novel Rattus norvegicus 81 AABR07057610.1 ENSRNOG00000053590 ENSRNOT00000080792 2 1 1 87 7 80112828 80112850 TGACTAGACTCTACCGTTATAGG 58 80100029 80112784 CCTATTAAACACCAATTCTGGC 58 Novel Rattus norvegicus 81 AABR07057640.1 ENSRNOG00000054328 ENSRNOT00000090645 2 1 1 94 7 82158474 82158493 GAGCAATCTTCACTGCTGTG 60 82158550 82160468 TCTCCAGAACAGCTGTGAC 59 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 1 1 1 94 10 11306655 11306673 TATCTGTGGTGAGCCTTCC 59 11306731 11308042 CTTCCATAGCAGGAGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 2 1 1 99 10 11306650 11306668 CTCCCTATCTGTGGTGAGC 59 11306731 11308042 CTTCCATAGCAGGAGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043822.1 ENSRNOG00000051743 ENSRNOT00000081658 3 1 1 82 19 41654474 41655389 CTTCTTCAGTTCATGGATTAGCAG 60 41655427 41655448 ACAATAATGTGCACACTGTACC 59 Novel Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 2 1 1 63 X 108894003 108894024 ATGTGGAAAGCATTATGGAGAG 59 108894048 108894891 AACCACCTGCAAATTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.1 ENSRNOG00000053667 ENSRNOT00000084188 3 1 1 60 10 16192349 16192367 GCTGGTTCTATGCTCATGG 58 16191654 16191673 TGTCCAGTAAGTGTCTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070129.1 ENSRNOG00000051579 ENSRNOT00000081874 1 1 1 86 8 53826161 53826179 ATTTGGAACAGAGCAGCTC 58 53825895 53826112 CTTGCCAACCCAGTATAAGG 58 Novel Rattus norvegicus 81 AABR07041239.1 ENSRNOG00000054788 ENSRNOT00000083591 1 1 1 84 X 123662350 123662368 CTTCTGGGTACCACTCCAC 59 123603291 123662302 CAGGAACGCAGAAAGACTG 59 Novel Rattus norvegicus 81 AABR07058134.1 ENSRNOG00000055252 ENSRNOT00000089725 3 1 1 81 7 101983835 101998434 AGTAGTCATAGGAGACCTGG 57 101998478 101998496 TGGTGACATGTACACATGC 58 Novel Rattus norvegicus 81 AABR07041794.1 ENSRNOG00000052271 ENSRNOT00000088248 2 1 1 60 X 140171770 140171788 GTTACCCTCAAGGAACCCA 59 140171810 140171830 CCGTATTCCCATTGCTTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 1 1 1 60 X 155796472 155797962 GTACTTTGACCAAGCCAGC 59 155796430 155796449 TTCTGTGGACTCTTCATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 3 1 1 61 X 155796472 155797962 GTACTTTGACCAAGCCAGC 59 155796429 155796448 CTTCTGTGGACTCTTCATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC107527.2 ENSRNOG00000061335 ENSRNOT00000092047 1 1 1 80 7 123500555 123500574 GTAGTCCTACCCAAGCTGTC 60 123494648 123500515 TATAGTCTCCGAGTTTCCTCAG 59 Novel Rattus norvegicus 81 AC107527.2 ENSRNOG00000061335 ENSRNOT00000092047 3 1 1 80 7 123500557 123500575 CGTAGTCCTACCCAAGCTG 60 123494649 123500515 ATAGTCTCCGAGTTTCCTCAG 59 Novel Rattus norvegicus 81 AABR07070331.1 ENSRNOG00000054108 ENSRNOT00000086237 3 1 1 63 8 65990395 65990414 GTTAGCAAGATTCTCCAGGG 58 65990440 65990831 CAAGGTGTGAATCCACCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07027910.1 ENSRNOG00000053712 ENSRNOT00000080015 1 1 1 80 17 48644951 48644970 CTGACTCTTTGTCATTGCTG 57 48645010 48645137 ATTCACAGATATTCTCCTCGTC 58 Novel Rattus norvegicus 81 AABR07070355.1 ENSRNOG00000052489 ENSRNOT00000088648 1 1 1 84 8 66894516 66894534 CTCAGTAAACAGGCTGTGC 59 66893353 66894468 AACTAGCAGGAGGCTTCAC 59 Novel Rattus norvegicus 81 AABR07070505.3 ENSRNOG00000058432 ENSRNOT00000090432 1 1 1 80 8 72734662 72734681 TATCACAAACCAGACAGACC 57 72734722 72736385 GTTAATTCACTTCTGTGCTGG 58 Novel Rattus norvegicus 81 AABR07070587.1 ENSRNOG00000060351 ENSRNOT00000091525 1 1 1 60 8 76103051 76104210 TGATGAAGCTCGTGAGAGG 59 76103009 76103027 CATTCTGTGGTGTGCAGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07070598.1 ENSRNOG00000055543 ENSRNOT00000090246 1 1 1 80 8 76332848 76333713 GCTAACTGGTGGCTTTGTC 59 76332786 76332805 TGTGGGTTCCTGTATAGCTC 59 Novel Rattus norvegicus 81 AABR07007980.1 ENSRNOG00000053154 ENSRNOT00000077467 2 1 1 94 2 36967188 36969575 GCTCTTCCCAAGAACACTG 59 36967112 36967130 GCAAGAATCACAAACAGCC 58 Novel Rattus norvegicus 81 AABR07007980.2 ENSRNOG00000057850 ENSRNOT00000082352 2 1 1 82 2 37032023 37032043 GCATGAGACCTACAAAGACTG 59 37023647 37031979 CCACGATTACACTGGTTGG 59 Novel Rattus norvegicus 81 AABR07044631.1 ENSRNOG00000053588 ENSRNOT00000091531 3 1 1 81 20 14000328 14000346 CCTCTTTCTTCACGGTCAC 58 13999572 14000283 AGGTGCTCACACCATACTC 59 Novel Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 1 1 1 70 20 14912476 14912494 ATAGCACCTCTGTGCTGTC 60 14912290 14912445 TACTTCATGCTTCTTGGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044754.1 ENSRNOG00000052144 ENSRNOT00000077693 3 1 1 82 20 19605284 19605302 TCTCAGCTTTCACAAGAGG 57 19605345 19610260 TATTCTGACCTAAAGTTGTCCG 58 Novel Rattus norvegicus 81 AABR07028511.1 ENSRNOG00000058351 ENSRNOT00000087046 2 1 1 80 17 73064790 73064811 CAATCGGATTAAACTGAGAGTG 57 73064851 73065312 ACTGTGTTCTTGGTCTATCG 57 Novel Rattus norvegicus 81 AABR07070834.1 ENSRNOG00000055417 ENSRNOT00000078167 3 1 1 81 8 86215746 86215764 TTGTCACAGGAGGTCTTGG 59 86215809 86216329 ATGCCTCAGCTCTTGTCTG 60 Novel Rattus norvegicus 81 AABR07044805.1 ENSRNOG00000055873 ENSRNOT00000091093 2 1 1 99 20 21197223 21212261 CCTGGAAAGTTTCCAGCTC 59 21212324 21212342 TACCTGTTCAAGCTGAACG 58 Novel Rattus norvegicus 81 AABR07008142.1 ENSRNOG00000052560 ENSRNOT00000080850 2 1 1 80 2 45616630 45619431 AAGTACAAGGCTTTGTGACTG 59 45616570 45616588 AAGGTGAAATGGTCAGGCA 60 Novel Rattus norvegicus 81 AABR07071210.2 ENSRNOG00000054553 ENSRNOT00000082571 1 1 1 81 8 104913752 104913877 GTTTCCAGAAGACAAGCACC 60 104913921 104913939 CAGTCTGGGAGAGGAACTC 59 Novel Rattus norvegicus 81 AABR07071245.1 ENSRNOG00000052905 ENSRNOT00000087092 3 1 1 80 8 106631768 106636581 CAGTGAACAGGTTTCACTTGG 60 106636620 106636641 CATGAAGCACTCTTCAGAAGTC 59 Novel Rattus norvegicus 81 AABR07028834.1 ENSRNOG00000060526 ENSRNOT00000088554 1 1 1 84 17 87861882 87861900 CTCTGGATGGCTTGAGTCC 60 87860592 87860612 GCAATGCAGGTAAATTCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028834.1 ENSRNOG00000060526 ENSRNOT00000088554 3 1 1 92 17 87861890 87861908 TTACCTTGCTCTGGATGGC 60 87860592 87860612 GCAATGCAGGTAAATTCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044980.1 ENSRNOG00000061835 ENSRNOT00000091080 2 1 1 82 20 30108187 30111690 CAATGCCACGGATCAAGAC 59 30108123 30108141 CCATGTCTTGTACGTCCGT 60 Novel Rattus norvegicus 81 AABR07060153.1 ENSRNOG00000061626 ENSRNOT00000087810 1 1 1 80 4 59288802 59288822 CAGCAGGAGAAGAGAATTCTC 58 59288090 59288762 TAGTGACTTCTGGTTGACTCC 59 Novel Rattus norvegicus 81 AABR07060222.1 ENSRNOG00000051677 ENSRNOT00000087972 1 1 1 87 4 63078376 63083914 GCTGAGATAAATGTGGACAAGG 60 63078310 63078331 CCTTTATAAGAGTTGCCATGGT 59 Novel Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 3 1 1 85 8 114178846 114178864 GTTAAACAACCACACCGGT 59 114176736 114178797 AAAGCAACTTCACAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060261.1 ENSRNOG00000059379 ENSRNOT00000086493 3 1 1 91 4 65074135 65074153 TGTTGTGGAGGAAATGCTG 58 65073059 65074082 GTTGTGAGACCTTTATCTGGA 58 Novel Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000082424 2 1 2 93 8 118464901 118464919 GTTCAGCTAACTGCTGTGG 59 118464973 118465233 CTAAGTAGACCCTATGCAACTG 58 Novel Rattus norvegicus 81 AABR07073455.1 ENSRNOG00000055688 ENSRNOT00000089206 1 1 1 80 8 120894571 120897642 AACAGCTCTATGACATCATTGG 59 120897680 120897701 TTTCTCCCATTTGAAGAAGCTC 59 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 3 1 1 84 8 121730434 121730452 TGTTCAAATGCCAAGCCAC 60 121726289 121730386 AACTTCTGGATGGCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC123500.2 ENSRNOG00000053935 ENSRNOT00000087266 3 1 1 97 19 41928216 41928235 TTACAGAGGAGGTAACTGGC 59 41919583 41928159 CGAAGGGTATAGACTGATTCAG 58 Novel Rattus norvegicus 81 AABR07060560.1 ENSRNOG00000052084 ENSRNOT00000087410 1 1 1 82 4 80474331 80474851 ACCTCTAGGAGTAAAGGACTC 58 80474269 80474290 TCTTCTTTCTGTCCTAGAAGGA 58 Novel Rattus norvegicus 81 AC111287.1 ENSRNOG00000059841 ENSRNOT00000082305 2 1 1 90 19 43187912 43188068 GATAAAGTACCAGACGGAGGAG 60 43188119 43188137 CTCCAGACTCTCCAACAGG 59 Novel Rattus norvegicus 81 LOC103694568 ENSRNOG00000052946 ENSRNOT00000085333 1 1 1 80 Y 2654321 2654536 CCACTGAAGTTCTCTAGATAACAC 59 2654573 2654593 GAGAAGGTGTTGCTCTTACAG 59 Novel Rattus norvegicus 81 AC125982.2 ENSRNOG00000052743 ENSRNOT00000080883 1 1 1 108 7 130472641 130472659 GAGGTCAGAGCTTACTGGG 59 130472730 130473913 GACCGACAGAGCTAAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058672.1 ENSRNOG00000052733 ENSRNOT00000083253 2 1 1 81 7 131193185 131200728 GTATGACAGAATTTGAAGGGAGC 60 131200769 131200787 CTCAAGGGATACCAGCGAG 60 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000077173 1 1 2 80 7 134986634 134988454 AGACTGAGATCTCTTCCCGT 60 134988497 134988515 TCTCGTGGAACTGGATTGG 59 Novel Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 1 1 1 80 19 56541200 56541457 CAAATATGGATCAGCATGGAGG 59 56541498 56541516 CGCTCTCAATTCTGTGGAC 59 Novel Rattus norvegicus 81 AABR07058788.2 ENSRNOG00000056137 ENSRNOT00000078882 1 1 1 80 7 137535128 137535652 CATTCACTTGAACGATACAACC 58 137535693 137535711 TCTTCCTCCTGGACTAAGG 57 Novel Rattus norvegicus 81 AABR07009028.1 ENSRNOG00000051925 ENSRNOT00000080377 1 1 1 60 2 84160023 84160041 ATGCTGACACCAACTTGTC 58 84127615 84160000 TAGTGTCTTCGCCTCAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044123.1 ENSRNOG00000061798 ENSRNOT00000089331 3 1 1 73 19 58907146 58907165 ATATCAGAGCTGCCAAGGAC 60 58908116 58908134 TGCCAAGACCTTACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009428.1 ENSRNOG00000055685 ENSRNOT00000077090 3 1 1 120 2 97674521 97674539 TGGATTCATCTTCCAGCCA 59 97672699 97672718 CGACAATGATGGTGGTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007088.2 ENSRNOG00000058931 ENSRNOT00000081935 1 1 1 80 1 280299191 280299209 ACAGGACAATGCTGTTTGC 59 280298004 280299150 CCTTTGGTTTGAATTCTCTGGT 59 Novel Rattus norvegicus 81 AABR07009986.1 ENSRNOG00000055301 ENSRNOT00000091825 3 1 1 84 2 119654860 119657853 CAAATCAAGACAAAGCTGGTC 58 119657899 119657917 TAAGCTCCGCAACAAACTG 59 Novel Rattus norvegicus 81 AABR07010040.2 ENSRNOG00000055732 ENSRNOT00000084029 2 1 1 82 2 121855427 121855445 CAGGAGTCTTGTCTCACGA 59 121842692 121855384 CCTTCTTTCTGCTGTTTCTCAG 60 Novel Rattus norvegicus 81 AABR07010330.2 ENSRNOG00000060192 ENSRNOT00000078133 3 1 1 82 2 132348344 132352880 GAAGGTCCTACAGATTCAGAG 57 132348282 132348301 GTTTGTGGTGGATTTATGGG 57 Novel Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 2 1 1 64 2 133026456 133028548 GCAGGAAAGTCCTACAGGAG 60 133026411 133026429 TTCCCGTCATCCTCTACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 3 1 1 116 2 142079488 142084821 GTTCTTAGGAATTCCTGGTGG 58 142079392 142079412 TCTTAACCTCTGAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07010609.2 ENSRNOG00000058331 ENSRNOT00000077599 3 1 1 81 2 143357500 143357518 AAATGTGAACGTCGATGCG 60 143347767 143357457 TGATAGGGACTCTTTCTTCCC 59 Novel Rattus norvegicus 81 AABR07010868.1 ENSRNOG00000052016 ENSRNOT00000078455 1 1 1 80 2 154030672 154033219 GAAAGAATGGCTGAGAAAGAGTC 60 154030614 154030632 GCAGCCTACAATCCATCCA 60 Novel Rattus norvegicus 81 AABR07011841.1 ENSRNOG00000056204 ENSRNOT00000084889 3 1 1 82 2 171693072 171693093 GTGCTGGATATGAGATGAACAC 59 171693136 171693561 CGCCTTTGCATAAACCTGG 60 Novel Rattus norvegicus 81 AABR07011934.1 ENSRNOG00000054050 ENSRNOT00000082323 1 1 1 80 2 176663361 176663380 TGTCTAGACTGCAAGAGTCG 59 176663417 176665601 GATTCTGGTAAATAATGGCTGTAGG 60 Novel Rattus norvegicus 81 AABR07012023.1 ENSRNOG00000057849 ENSRNOT00000087041 2 1 1 90 2 182713265 182717132 TTCTGCGTGGTAGTAGGTG 59 182713193 182713211 TGTCATCCAGTGATGGGTG 59 Novel Rattus norvegicus 81 AABR07014317.1 ENSRNOG00000053286 ENSRNOT00000080564 2 1 1 126 14 9101543 9101561 TTAAGCACTCGCTTCTGTC 58 9100313 9101454 TTAATCTGTCGTTCTTGGCA 58 Novel Rattus norvegicus 81 AABR07014424.1 ENSRNOG00000051389 ENSRNOT00000080921 1 1 1 81 14 15418315 15418336 ATTCAATTGTCTCCAGCATCTC 59 15418378 15419168 CATCAGGCTCCTGAAGACC 60 Novel Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 2 2 2 93 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040926 204040944 GCTTCATCCAATGCAGAGG 59 Novel Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 1 1 1 60 2 222721588 222783265 AAAGGTTGTCACCCTCACC 60 222783289 222783307 GAAGTCTCCAATGCCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013314.1 ENSRNOG00000060298 ENSRNOT00000091790 2 1 1 83 2 232988645 232988663 TTTGAACTAGCAAGGCACG 59 232988707 232993626 GATTTCCAGCAAATCTTTCTCC 58 Novel Rattus norvegicus 81 AABR07013410.2 ENSRNOG00000055227 ENSRNOT00000084227 3 1 1 80 2 236005030 236005657 AAGGAAAGTAGAAGGGCAGG 60 236005700 236005718 CCATCCTCGTCTCATCCTG 59 Novel Rattus norvegicus 81 AC140765.1 ENSRNOG00000053373 ENSRNOT00000087201 2 1 1 80 2 243798836 243798855 AGAGATGTGTTTGATGCCAG 58 243778123 243798793 CTCTTTGTCAGTGCCTCTC 58 Novel Rattus norvegicus 81 AABR07013743.1 ENSRNOG00000052422 ENSRNOT00000090154 3 1 1 86 2 254177921 254177942 AAATAAAGAGGAGCAGGATGAC 58 254176233 254177875 TATAGCAGCTCAAATGCCAC 59 Novel Rattus norvegicus 81 AABR07013907.1 ENSRNOG00000056191 ENSRNOT00000087260 3 1 1 85 2 262385534 262385554 GCCATCATAGAAACCATGTGG 60 262385601 262386834 TGGATGTGGTCTGTTTCCT 59 Novel Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 3 1 1 61 8 72904225 72904243 CATTCCCTTCCCATGACCT 59 72904270 72904288 ATTTGTGGTGAGAGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 1 1 1 63 18 45960516 45960535 ACTGGATTTCCATCTCTGTC 57 45960561 45960581 GCAAATCAGAACTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000034522 3 1 4 80 3 140156485 140156503 AACTGGAATGTTGCCAAGC 59 140156547 140160344 AACACAGTCTGTGCATGGA 60 Novel Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 1 1 1 60 13 51939272 51939292 CTTACCAAGTCTCAACTTGCC 59 51939315 51939333 GGTGGCATATGTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000053838 ENSRNOT00000081101 2 1 1 60 1 116710520 116710541 GACAACAGAAAGTCAAGAACAG 58 116710481 116710500 GAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970 1 1 4 80 19 17395975 17395995 AGCCTCTTTATGAAGAAGCAG 58 17389700 17395936 ATTTGGATCGACCAATTCTCTG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000056556 1 1 2 80 7 116560030 116561002 GTGTGCAGAAAGAGCTCAG 59 116559968 116559986 GTAGCAGTTGATGAGCAGG 58 Novel Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 3 1 1 65 5 168845244 168845263 GCTGAAATCACCATCTTTGG 58 168845331 168845349 CATAGCTCTTTGGACTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 2 1 1 60 X 100207597 100207615 CTACTACCACCAATGCCAG 58 100206832 100206850 TCGACAATCTTTCCTGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 3 1 1 60 10 83536127 83536145 CACATGTTGGTACATGGCT 58 83536169 83536189 GGTAAAGACTATCAGTGAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 3 1 1 64 6 93357152 93357176 GTACATATCTAGATACATGGGACTG 58 93357198 93357218 CAAATGAAGAGTCACGAAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000089439 2 1 4 90 1 49618238 49681762 CAGAGGTCCAGCTAAACCC 60 49618166 49618184 CTGAACTCGGAGTTTCCCA 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000077423 2 1 4 80 1 49425799 49425819 GTAGCTTTGAACCTGATCACC 59 49293486 49425759 GGAAGAGCTATCCAAACTGAC 59 Novel Rattus norvegicus 81 AABR07065291.1 ENSRNOG00000049801 ENSRNOT00000073939 1 1 1 87 6 119627446 119627467 TGAAGGACTTCAAGAAAGACAC 59 119627510 119627538 CTGTCTATGTCTCTATCTTCTGCT 59 Novel Rattus norvegicus 81 AABR07042565.1 ENSRNOG00000052151 ENSRNOT00000077592 3 1 1 80 19 34876 34895 ATCATGGAAAGTGGTGTGAC 58 34088 34833 GATCTTGGACACCGTAGTG 58 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060076 ENSRNOT00000083370 1 1 1 60 14 50367834 50367852 TTGAGACCAGGAGTTCTGG 59 50367874 50367894 CAAACTTAATGTGGACACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0055.3 ENSRNOG00000058373 ENSRNOT00000081611 2 1 1 95 20 3398542 3398561 GCTGGCTCTTCTCTTTACTC 58 3395532 3395550 CTTCCTATCTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044463 ENSRNOT00000069730 3 1 1 60 1 166886683 166886702 CATACCACCATGAACATGCC 59 166886642 166886662 AAATTCTAACTAGGCCTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 3 3 4 95 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336265 88341872 CCATATTTCTTGCTGCTCCC 59 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370 3 1 2 80 2 257507400 257507418 GAAGCTATGCATCTGGTGG 58 257507261 257507360 CCGAAGGTAAATACATTCTCTGG 59 Novel Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 1 1 1 66 1 92088285 92088306 GAAGCAAGATTCAGAATAACGG 58 92088238 92088257 TGACCTTGACTGGGTAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 3 1 1 72 1 92088293 92088312 TGCCAAGAAGCAAGATTCAG 59 92088238 92088257 TGACCTTGACTGGGTAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 3 1 1 60 4 103403939 103403958 TTTCTTGGATTCCTGTTGCT 58 103403786 103403804 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000057108 ENSRNOT00000081930 1 1 1 60 9 2678510 2678528 AGAGACTTTGACAGCCCAG 59 2678550 2678570 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057108 ENSRNOT00000081930 2 1 1 60 9 2678477 2678495 CATGGGATCTCCAACTGCA 60 2678519 2678537 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053046 ENSRNOT00000091091 3 1 1 60 19 24884205 24884225 CAAGGGTTTATGAGTACTGCG 59 24884246 24884265 AGCTTTCTTGAGAGCTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.2 ENSRNOG00000060938 ENSRNOT00000079073 3 1 1 62 7 143212728 143212746 ATGATGCTGTCCAGATCCA 59 143212772 143212790 CTCTGAGACCTCTGTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052312 ENSRNOT00000081212 2 1 1 60 18 2024485 2024505 CCTTTGTGGTAGAGTACTCAG 58 2024527 2024545 CTGTCAAAGCTCCCTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 2 1 2 86 6 139486789 139486807 CAGCTTGGCTTTCCTTGTC 60 139486967 139486985 CCAGGCTGTACTAAGCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 1 1 1 109 6 140642199 140642217 ACATCAGTCTCAGCTTGGT 59 140641994 140642012 TTTCAGAGACCTTCCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056 3 1 2 124 10 89173873 89174661 CACAAGGTCAATGCTGAGG 59 89174749 89174989 GTAACGTAAAGAAGGGCGG 59 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341 2 1 4 120 20 4428452 4428471 CATCAGTCAGCCTCTGTAGG 60 4427879 4428369 AAGTAGCAGAACTGGGCTG 60 Novel Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 3 1 1 63 6 2660920 2660938 ATGTGTCTTCACTCCTGCA 59 2660300 2660321 GCAAGATTTCTCACATTGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 3 1 1 75 1 12400879 12400898 GATGACCAAAGTGAACAGGG 59 12403155 12403173 ATCTTCGATCAGGAGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000079528 2 1 2 80 10 67111163 67111182 GAGAAGTGAACTTGACCTGC 59 67110305 67111120 CCAGAAGCACACTCTAGCA 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 1 1 2 60 4 157753882 157753902 TCCATCCACAGAACTAAACAC 58 157754140 157754158 TTGACAGTCAGGGCTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 3 1 1 108 4 170077450 170077468 AGAAAGTACTCGGGAACCC 59 170075637 170075660 GTCCCATGTTGACAGTTTATATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776,ENSRNOT00000082851 2 2 2 82 5 132706093 132708831 GAATCCAGGCATAAATGATGTG 58 132708871 132708892 CATAATTCATACCTGGATTCGC 58 Novel Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 3 1 1 62 15 29664805 29664824 AGTAGCCTGGAAACTCAGAG 59 29666867 29666885 GAGCCTCTTGAGGACACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 1 1 1 63 4 181677063 181677082 CTCCAAGAGTAAACACCCAG 58 181676537 181676555 TCCTGCCAGTCTCATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 2 1 1 61 6 36731270 36731289 GCTATGATCCTTCACCTCAC 58 36729829 36729847 CTAGGGCCTGGAATTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957 1 1 2 80 15 46502329 46512109 CTTGAAGTATTTAGAGGGATGATGC 60 46512147 46512165 TCAGACCTGAAGCACAGAC 59 Novel Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 1 1 1 107 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14434668 14434686 CAGGTCTTAGCAGAGTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 1 1 1 73 15 105203080 105203098 TTCTACCACATGGAGCCAC 59 105205029 105205047 AATCTTCAGCCTTGCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 3 1 1 78 6 97335375 97335393 TGGTGCTTTCAGGAGAAGG 60 97427433 97427454 TCCTTTCTCCTCTGTAGATCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 2 1 1 60 3 30248550 30248570 ATTAAACACCATGTGACCCAG 59 30247188 30247209 TACTTCCTATGGAATGGATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 1 1 1 71 11 39618518 39618536 TCAGGCCAACATGAGTGAG 60 39648230 39648252 CCATTATCTCCTGATGTCTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 3 1 1 60 3 61124855 61124874 CTTTACCCTCTCAGACATCC 57 61124897 61124915 ACAGATGTCCGTTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 2 1 1 71 1 141675222 141675242 GTAAGAAAGAAGAAAGGCGGA 58 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 3 1 1 144 16 51791833 51791851 CTACGCACCAATGTCTCTG 58 51790974 51790994 GCGAACACTAAATGGAATCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 1 1 1 64 16 64877670 64877688 AGAATGGATGTCAACGCAG 58 64878361 64878379 CACTCTTCTGAATGCTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 1 1 1 64 3 160964928 160964946 GAGAGGCTTGGAAATGGAG 58 160972991 160973009 AGTGCTCTTGACTGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 3 1 1 83 12 46494607 46494625 CTTGTACCTCTGGGTTGAG 57 46495851 46495869 CCTACCGATGCTCTAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000088976 1 1 2 121 7 26145821 26145937 TACAGAGGGCTAGGTCTCC 60 26145718 26145736 TCTCACTTACTTCCGCCAC 59 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 2 1 1 69 17 20636847 20636866 TGATTAGAGGAGTTCAGCGG 59 20668849 20668867 GAGAGTTCTGGGTTCGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 2 1 1 79 1 278524946 278524964 CATCCTGACCATTCACACG 59 278522692 278522710 TTCTGTCCATAGGCTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 3 1 1 68 10 30555462 30555483 GAATTTAATCTGCAACTGCCAG 59 30546833 30546852 CCCTTTGCAATGGTACAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 3 1 2 150 4 105100 105118 TTACTTGCGCCACTAAAGC 59 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 3 1 1 82 20 14912431 14912451 TGTTCTGAGATCCAAGAAGCA 60 14912235 14912253 TCTTGACACGGTAGCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 2 1 1 107 8 114178845 114178863 TTAAACAACCACACCGGTC 58 114176713 114176733 GAGAACTCCACAGATCATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308 3 1 2 82 20 45681161 45681180 GTAACAGGTCACAGGAAAGC 59 45681225 45683141 TGTCCATGACCTGTCTCTG 59 Novel Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 3 1 1 61 19 52061449 52061467 CAGGCTTCAGTGAACTCCT 59 52053580 52053598 GAGAGCAGTTACACCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 2 1 1 60 8 130967903 130967923 TCACTTTCTGCACTTGAACTG 59 130967655 130967673 TAAAGTACCTGACAGCAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 3 2 2 143 2 156311186 156316031 AGTACTCCAAGGGCATGAG 59 156311061 156311082 CCATGTATATCAGCGTTTAGGT 58 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 1 1 1 60 2 162021722 162021740 CCTTGTAGCCCAGAAAGCT 60 162022788 162022806 GGTTTGAAGAGCTCACCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 3 1 1 101 14 24842981 24843001 AGTAGTACTACATGTGCCCAG 59 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 3 2 2 95 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040927 204040946 GAGCTTCATCCAATGCAGAG 59 Novel Rattus norvegicus 81 Mt-cytb ENSRNOG00000031766 ENSRNOT00000042098 1 1 1 60 MT 14636 14657 CTTCTCAGTAGACAAAGCAACC 59 14678 14696 GAATGGGAGGATGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499530 ENSRNOG00000031115 ENSRNOT00000049679 2 1 1 104 2 48966183 48966202 AATTCTGGGAGCAACATGAC 59 48966268 48968456 CAACTGTGATCCAAGATCGT 58 NA Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 3 2 2 81 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592123 41592142 ATGTCACATTTGTTTCCGGC 60 NA Rattus norvegicus 81 Mir137 ENSRNOG00000035491 ENSRNOT00000053614 1 1 1 60 2 221658139 221658160 TGGGTGGATAATACGGATTACG 60 221658181 221658199 GTACTCTCCTCGACTACGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per3 ENSRNOG00000018413 ENSRNOT00000024932 1 1 1 80 5 168095566 168099151 CTACAGTCAGAAAGTGTTGCC 59 168095506 168095524 CTTGAATCCTTCTGCGGTC 59 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 2 2 2 81 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856015 150856033 GCAGGATGAGCAAATCGAC 59 NA Rattus norvegicus 81 Dffb ENSRNOG00000025030 ENSRNOT00000032825 2 1 1 80 5 171259906 171259924 CGACCTTCTGCATCATGTG 59 171258005 171259863 GACTCCAAACCTTCAAACCA 58 NA Rattus norvegicus 81 Ifi44l ENSRNOG00000049994 ENSRNOT00000073547 3 1 1 80 2 256967596 256976406 GGTATCAGTTCAACCCACG 58 256976449 256976468 GAATCCTGTCCTTCAGAGGT 59 NA Rattus norvegicus 81 Dad1 ENSRNOG00000009090 ENSRNOT00000012233 1 1 1 103 15 32887758 32887776 GTTCGGCTACTGTCTCCTC 60 32876288 32887692 GTATTCTCAAGCAAACCGCT 59 NA Rattus norvegicus 81 Tinf2 ENSRNOG00000020189 ENSRNOT00000027362 2 1 1 81 15 34361764 34362184 TCAAGAAACCAGTGCTATCC 58 34361702 34361720 TCTTCCTCATCAGAGTCCA 57 NA Rattus norvegicus 81 Ufm1 ENSRNOG00000038176 ENSRNOT00000058116 2 1 1 102 2 143101630 143104205 CTACCGTACAAAGTCCTCAG 58 143100739 143100757 TAATCGCACTTGTAGCAGC 58 NA Rattus norvegicus 81 Fyb ENSRNOG00000013886 ENSRNOT00000018634 2 1 1 80 2 55949852 55952185 TCCTAACAGCCACAGTCAG 59 55953505 55953526 TCTATCCCATCATAGATGTCGT 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000079802,ENSRNOT00000078824 1 2 5 60 X 22247178 22247196 GGTCCAGACTCATGGAACC 60 22249057 22249077 TGTAGAGTATGAGACGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910479 ENSRNOG00000048079 ENSRNOT00000073707 3 1 1 60 20 638015 638033 CCTAACAGCTCCTATGCAC 58 637973 637993 TAACCACGGTATACAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ermap ENSRNOG00000000335 ENSRNOT00000039305 2 1 1 80 5 138237929 138239249 CAGAAGATGTCAGTTCATATGGAG 59 138237872 138237892 GAAGATGGCTATCGTGAAGAG 58 NA Rattus norvegicus 81 LOC171573 ENSRNOG00000008563 ENSRNOT00000011381 1 1 1 80 8 41444918 41444937 AAGGAAACTCCACCTGTGAG 60 41444422 41444880 CAAAGAGGATATCAACACCTTGAG 60 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000011742 2 1 2 81 15 37408544 37409597 TGGCTGTTATTGAAAGGTGAC 59 37408483 37408501 GTCAGCAGTGTTAGTGGTG 59 NA InUTR Rattus norvegicus 81 Kcnj15 ENSRNOG00000001656 ENSRNOT00000002259 2 1 1 85 11 35580352 35584101 TGACCTACAGAGTGGTCCA 60 35584150 35584168 CATTGCTGTGCTTCACCAG 60 NA Rattus norvegicus 81 Rcan1 ENSRNOG00000001979 ENSRNOT00000002715 3 1 1 109 11 32544254 32545579 TACTTTGCCCAGACTTTACAC 58 32544165 32544183 ACTTGTTTCCAGCCAACAG 59 NA Rattus norvegicus 81 Amy1a ENSRNOG00000033529 ENSRNOT00000022496 3 1 1 80 2 216430932 216430953 AAGTGACCATTAACTCAGACAG 58 216430771 216430894 CAACCATGTTCCTTATTTGACG 58 NA Rattus norvegicus 81 Bckdhb ENSRNOG00000009928 ENSRNOT00000013249 1 1 1 81 8 91527102 91527121 AAAGCTTGGAGTGTCTTGTG 59 91527159 91596412 GATCACAGACTTACAAACTGTATCC 60 NA Rattus norvegicus 81 Mir34b ENSRNOG00000035561 ENSRNOT00000053684 2 1 1 61 8 55492595 55492615 TGTAGGCAGTGTAATTAGCTG 58 55492554 55492572 GATGGCAGTGGAGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 1 2 2 93 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777335 32777353 CAGAAGAGGTGATGGACCC 60 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166,ENSRNOT00000056161 3 2 2 80 8 118067161 118067180 TGGTGATGAGAAATCTGGGA 59 118067219 118085417 GAAGATGGGATATCTTCAACCTG 59 NA Rattus norvegicus 81 Mir383 ENSRNOG00000035589 ENSRNOT00000053712 2 1 1 65 16 57519680 57519699 AGATCAGAAGGTGACTGTGG 59 57519727 57519745 TCTTTCTGACCAGGCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcne2 ENSRNOG00000029811 ENSRNOT00000040844 3 1 1 66 11 32440386 32440404 TATCAGCACTCCTGTGAGG 59 32445739 32445758 GTCAAGTTGGCTAAAGTGGT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr7 ENSRNOG00000015289 ENSRNOT00000020514 1 1 1 60 1 70485800 70485819 AGTAAAGACATCAGGGACGG 59 70485759 70485779 AGAGGATCAGCAGGTAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacsin1 ENSRNOG00000054603 ENSRNOT00000090820 1 1 1 80 20 7282813 7282949 CTGAACAGCAGAAGAAAGTGG 60 7283004 7283026 CCTTCTCATACTTCTCCTGAGTC 60 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000002221 1 1 2 83 11 36880196 36910233 AGATAATGGCAAAGTGCTCAC 59 36910278 36910296 TCTTAGAGACCGAGCAGGT 60 NA Rattus norvegicus 81 RGD1560112 ENSRNOG00000050155 ENSRNOT00000074943 1 1 1 80 8 41553283 41554121 ACTCCCTCCAAGCTTTGAC 60 41554164 41554183 GACAGCATCCTTCTCCTCTC 60 NA Rattus norvegicus 81 Zscan2 ENSRNOG00000022164 ENSRNOT00000034267 1 1 1 123 1 142679828 142679846 CTGAGGTGAATCCAGAGGG 59 142679933 142682109 CAAGAAACACTGCCTCTCC 59 NA InUTR Rattus norvegicus 81 Zcchc13 ENSRNOG00000002923 ENSRNOT00000003899 1 1 1 60 X 74497619 74497639 CACATCCAGAAAGACTGTACC 59 74497661 74497679 CCATGTGTCCATTCTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686967 ENSRNOG00000046235 ENSRNOT00000074881 2 1 1 60 1 229100876 229100897 GTATGATTGTGCTGATTCTCTG 57 229100917 229100936 GCAAGGAAACAATACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 3 1 1 60 1 170863969 170863988 ACAATCATAGCCCTGTACCT 58 170864011 170864029 TGATGACCAGGAGTAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 1 2 2 80 5 14612083 14612101 AGCTTGTGAATGGGAGAGG 59 14612144 14616842 TATCAGCACCCTCTTCAACC 60 NA Rattus norvegicus 81 Slc35a3 ENSRNOG00000061832 ENSRNOT00000085122 2 1 1 81 2 219719547 219725329 CAAAGACAGTAAGTGTAGTGTG 57 219719487 219719505 CTTCAGTGTTTCCATGGGT 58 NA Rattus norvegicus 81 Trmt44 ENSRNOG00000008898 ENSRNOT00000011824 3 1 1 80 14 80367275 80367293 CAGAGGGATTGATGTCCGA 59 80367336 80369733 GGAGTGATGGAACCTTCCTC 60 NA Rattus norvegicus 81 LOC100360446 ENSRNOG00000019884 ENSRNOT00000026979 3 1 1 60 1 199654867 199654886 TTCAAGTGCAGGAATTGTGG 59 199654826 199654846 TTTGATGGTGAATGAGGTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhfr ENSRNOG00000013521 ENSRNOT00000018259 2 1 1 80 2 21940706 21940724 TGAACAACCAGAGCTAGCA 59 21940768 21943415 TGATTCATGGCTTCCTGGT 59 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453,ENSRNOT00000011317 1 2 2 80 X 1757992 1758012 CTGGACTCTATCAGCAATCAG 58 1757817 1757954 GTGACATGATGGTATATGACTGG 59 NA Rattus norvegicus 81 Hrc ENSRNOG00000020719 ENSRNOT00000028116 2 1 1 80 1 101327377 101327398 ATGTAGTGAATGTGAAAGCTGC 60 101327439 101327654 CAGAATTGGCAGTGCTGAC 60 NA Rattus norvegicus 81 Olr507 ENSRNOG00000055270 ENSRNOT00000090035 1 1 1 60 3 73800647 73800666 ACAATGACAAAGTGGCTTCC 59 73800606 73800626 ATCAAGGGATTCAACATAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0551.5 ENSRNOG00000038267 ENSRNOT00000029387 3 1 1 60 X 54892905 54892923 GAAGAGGAAGAGAAAGCCC 58 54892863 54892881 TGACTTTGCCTTTAGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lect2 ENSRNOG00000012189 ENSRNOT00000016252 3 1 1 85 17 8489442 8490542 TTTGATTTCCACTGCCCTG 58 8490591 8490609 CATAGCTGTCACATGTCCG 58 NA Rattus norvegicus 81 Paqr9 ENSRNOG00000032374 ENSRNOT00000049729 1 1 1 60 8 103337849 103337867 AGACGCTCAACTTCTGGAC 60 103337891 103337909 CGGCAGAACTTACTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agxt2 ENSRNOG00000017821 ENSRNOT00000024035 2 1 1 80 2 60367015 60367035 ACACTTACATCACTTCAGCAC 59 60367076 60372943 TCTTCAATCACCTCAAGCAC 58 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 3 3 3 80 2 184901905 184903595 CTACATACAGGACTCTGCTGG 60 184903637 184903655 GAAAGCCAAGAGAAGCCTG 59 NA Rattus norvegicus 81 Rn60_X_0594.6 ENSRNOG00000051313 ENSRNOT00000076102 2 1 1 81 X 58583431 58583451 ACATGGCATTATAGCCAAGTG 59 58583228 58583390 GGCTCAAGTGCTGAATATCTC 59 NA Rattus norvegicus 81 Capsl ENSRNOG00000054277 ENSRNOT00000089609 1 1 1 80 2 58744579 58747564 CTATGATAAAGATGGGTTGGTGAC 59 58747600 58747621 ACATCTGTATCAATGGATGCAC 59 NA Rattus norvegicus 81 Tgif2lx2 ENSRNOG00000029850 ENSRNOT00000045685 2 1 1 60 X 90588548 90588568 TGCCAATATGCCAAGAATCTC 59 90588588 90588608 TTCTGGCCAAGATAAGACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1118 ENSRNOG00000030856 ENSRNOT00000046875 3 1 1 60 8 17860253 17860274 CCTTATCTTCAGCTTGTTCCTC 59 17860214 17860236 GATGAGCAGATTTCCTAGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galnt3 ENSRNOG00000010344 ENSRNOT00000036721 3 1 1 80 4 152756262 152756280 GCTGAATTCTGGCTGAGTC 59 152755806 152756219 CCATTCCTTTCCTGTCTTGC 59 NA Rattus norvegicus 81 LOC100911944 ENSRNOG00000050764 ENSRNOT00000073085 2 1 1 60 8 18051066 18051087 TATTGGACTGACATATGCTCCT 59 18051027 18051046 TATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr92 ENSRNOG00000015811 ENSRNOT00000021169 3 1 1 60 1 168455624 168455644 GGTTATTGTAGCATCTGTGGG 59 168455584 168455607 GATCAGAGTATAGGACAGAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Insig1 ENSRNOG00000006859 ENSRNOT00000009233 2 1 1 81 4 345588 346034 CGTCTACCAGTACACGTCC 60 346079 346097 CACTGTGACACCTCCTGAG 60 NA Rattus norvegicus 81 Sec14l2 ENSRNOG00000004672 ENSRNOT00000006542 3 1 1 80 14 84353463 84353482 ACTTTCTCCTTCGATGGCTC 60 84348657 84349076 GGAATTCCACATGCTTCCG 59 NA Rattus norvegicus 81 Olr1314 ENSRNOG00000006035 ENSRNOT00000007901 3 1 1 60 8 43442822 43442841 GGCAGACAGAAAGCATTCTC 59 43442781 43442800 CGTAGGCACAAAGAATAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scamp2 ENSRNOG00000019136 ENSRNOT00000066923 3 1 1 81 8 62360092 62360688 TGTGGATGTTGCATTCAGTG 59 62360732 62360750 GTTCCATTAGCTGCGTCAC 59 NA Rattus norvegicus 81 Cdc42ep2 ENSRNOG00000020904 ENSRNOT00000028379 1 1 1 81 1 221273786 221281163 CTCCTCAAGCTTCTCAACTC 58 221273724 221273743 GAAAGGTGAGATCTCAGCAG 58 NA InUTR Rattus norvegicus 81 Kctd10 ENSRNOG00000047896 ENSRNOT00000073019 2 1 1 92 12 48005835 48006924 CTACACCAGCAATTCCGAC 59 48006979 48006998 TTTATGAACAGGACCCTCCC 59 NA Rattus norvegicus 81 Ntrk1 ENSRNOG00000013953 ENSRNOT00000018961 2 1 1 80 2 187147183 187147496 GTGATACCTGTGTCCACCA 59 187147121 187147139 AGACCTTTCCAAAGGCTCC 60 NA Rattus norvegicus 81 Cecr5 ENSRNOG00000011338 ENSRNOT00000015090 2 1 1 80 4 153064892 153064910 TTGCAGTACCACAACAAGC 59 153062169 153064849 ATTCTGGAAGCCTAGTGCTC 60 NA Rattus norvegicus 81 Neil2 ENSRNOG00000010696 ENSRNOT00000014198 1 1 1 82 15 46377579 46377598 TGGGTGAATGACTTCTCCAG 60 46375404 46377534 AAATGGAGTACCAGCCTGG 59 NA Rattus norvegicus 81 Rn60_17_0410.2 ENSRNOG00000051206 ENSRNOT00000077042 1 1 1 80 17 39106295 39108784 AGAGCCATCATCTATTGGTGG 60 39108826 39108844 AGTCGCTGTTTACCTGTCC 60 NA Rattus norvegicus 81 Apoc4 ENSRNOG00000018405 ENSRNOT00000024832 2 1 1 89 1 80596247 80599419 TGCTTTGTAGCATCCATGC 59 80596176 80596194 CATCACCCTGGCTCTTACC 60 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000028158 2 1 5 87 1 87704864 87704882 CATGTGTTCCCTGTGTTGG 59 87704933 87707451 CGGAATCTGTATCCGGGAG 60 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839,ENSRNOT00000064153 2 2 2 80 1 86961748 86961766 TCTGCCACTACTTCATCCG 59 86961806 86966515 GTTCCAGAGTGTCAATATTCTGC 60 NA Rattus norvegicus 81 AABR07065802.1 ENSRNOG00000047599 ENSRNOT00000075526 2 1 1 60 6 141831410 141831430 GCAGATTCACCATCTCAAGAG 59 141831370 141831388 ATGCTGTTCATTTGCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acta2 ENSRNOG00000058039 ENSRNOT00000083468 2 1 1 80 1 252539593 252540952 CTTTCATTGGAATGGAGTCGG 59 252539533 252539555 CCTTCCTGATGTCAATATCACAC 59 NA Rattus norvegicus 81 Prss1 ENSRNOG00000032156 ENSRNOT00000040403 2 1 1 102 4 70778235 70778645 CAATGGTGTGAACAACCCA 59 70778711 70778729 CATGCTGCTGGTGATTTCC 60 NA Rattus norvegicus 81 AABR07036187.1 ENSRNOG00000045833 ENSRNOT00000073223 3 1 1 60 12 35613020 35613039 TCGTTCTAGATCAACTGCCA 59 35613060 35613080 TCACTTCCATCATACTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rimkla ENSRNOG00000008625 ENSRNOT00000011586 3 1 1 92 5 138521787 138523761 CTTTCTAGGTGGTGTGGGT 59 138521713 138521731 CAGAAATCCATGCCCAGGA 60 NA Rattus norvegicus 81 Ccdc147 ENSRNOG00000053565 ENSRNOT00000077738 3 1 1 80 1 267726274 267727117 GAGGCTCAGGATGAAATAACAG 59 267727156 267727176 GATTTCTTCCTTCAGCTGGTC 59 NA Rattus norvegicus 81 Fam98b ENSRNOG00000005366 ENSRNOT00000034950 3 1 1 80 3 108976601 108977227 TGGTCGCTTAAAGATTCCTC 58 108977267 108977288 AGTGAAAGACCATAGGTAACTC 57 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000025495 3 1 2 150 18 29191791 29191809 TATCCACAACAGCCAATGG 58 29191922 29232883 CTACCACATACACTGTGGTC 58 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 3 2 2 80 17 38461285 38462011 GTCATTGCTCAAATTGGTTCG 59 38462052 38462071 AGATGCAATGATGGAAGTCC 58 NA Rattus norvegicus 81 Rn60_X_0586.1 ENSRNOG00000051324 ENSRNOT00000076188 1 1 1 60 X 57715368 57715389 TGATTTCCTGGTTATGTCTCTG 58 57715329 57715347 TGTGTTTCCGATGTACCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562161 ENSRNOG00000005135 ENSRNOT00000006867 1 1 1 80 X 38331091 38331109 GAAAGCTTCCCTCAGTCAC 58 38330560 38331049 ATCCTCTGGATACCTCTTCTG 58 NA Rattus norvegicus 81 Defb30 ENSRNOG00000038758 ENSRNOT00000059211 2 1 1 85 15 46221750 46223335 TCCTCCAGTTAGAAGTGGAG 58 46221684 46221702 ATACATTCCTGCAATGCCC 58 NA Rattus norvegicus 81 Rmdn2 ENSRNOG00000006082 ENSRNOT00000008045 1 1 1 80 6 2256212 2256898 GACCACAAAGAGAAGTTTAGTG 57 2256936 2256957 AGATAGGTCATACATGTCTCCA 58 NA Rattus norvegicus 81 Rmdn2 ENSRNOG00000006082 ENSRNOT00000008045 3 1 1 91 6 2256212 2256898 GACCACAAAGAGAAGTTTAGTG 57 2256949 2256968 TGCGTGTTTGTAGATAGGTC 58 NA Rattus norvegicus 81 Adamtsl3 ENSRNOG00000010840 ENSRNOT00000032106 3 1 1 80 1 144495568 144495586 GGCATCGTCTCATAAGTCC 58 144495630 144510690 GTGACAGAACACTTCGACC 59 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 1 2 2 80 8 94913208 94916140 GAAGATGATGGACTGCTTGG 59 94913147 94913168 CTCTTCCATGTCCGTAATAGGT 60 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 2 2 2 80 8 94866146 94866167 GCTTAGAAAGGAAGATCAAGCA 59 94864705 94866108 GTGTTTGCTGTATTATCTGCTG 58 NA Rattus norvegicus 81 Olr371 ENSRNOG00000030471 ENSRNOT00000045383 2 1 1 60 1 230451329 230451348 CACTGACAAGGTAGCATCTG 58 230451368 230451389 GACTATAGGGTTCAACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 1 2 2 120 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079892 111079910 AAAGACATCGGTATCCGGG 59 NA Rattus norvegicus 81 Naa40 ENSRNOG00000021179 ENSRNOT00000028759 2 1 1 80 1 222481971 222482132 GTCCTGTACTGCTATGAAGTG 58 222481911 222481929 CTGCAGGATCTGAATGAGG 58 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 2 2 2 80 1 89535302 89537996 GCCTCTCACAGAATACATCC 58 89535241 89535259 GTCACTGTACAGACCTTGC 58 NA Rattus norvegicus 81 RGD1308706 ENSRNOG00000017090 ENSRNOT00000023169 1 1 1 96 19 22699950 22705965 ACCAACAGATTCCTGTTGC 58 22706024 22706043 GGTGGTGATTTCTCTGAGTG 58 NA Rattus norvegicus 81 Kptn ENSRNOG00000001493 ENSRNOT00000002043 2 1 1 80 1 78016408 78016602 TTATAAAGGACTCAGGAGACAAGG 60 78016641 78016659 CCAGGTTGTACTCTGAGCC 60 NA Rattus norvegicus 81 Cox20 ENSRNOG00000004553 ENSRNOT00000006154 2 1 1 80 13 96222780 96222803 GAGAATCTATACTGTATGGCTCAC 59 96222839 96222949 ATCTTCTAATTCTGCTGGTCAC 58 NA Rattus norvegicus 81 LOC100361143 ENSRNOG00000059302 ENSRNOT00000072162 3 1 1 60 2 102919452 102919473 AACAGACTCTGAAGATGATCAG 58 102919413 102919433 CAGTTGTTAGCGAGGATAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 3 2 3 66 X 62367014 62367032 TTCACCAGTTACCAGCTGG 60 62367062 62367080 TGAAGACGTCAGGGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000091240,ENSRNOT00000083362 1 2 3 60 X 62363954 62363972 TGAGCAATCAGTACCAGGA 58 62363995 62364014 GGCGATTTACTCTTGCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0565.1 ENSRNOG00000042697 ENSRNOT00000058379 2 1 1 60 6 47724237 47724255 AGGTTGCTATTGACATGGG 58 47724277 47724297 TTCTCATTCTGGTACACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 3 1 1 86 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165478 82165498 ATTAGCTGAACCAAGGAGTCC 60 NA Rattus norvegicus 81 Dand5 ENSRNOG00000033368 ENSRNOT00000044133 3 1 1 83 19 25930836 25935727 CTTTGTTCAGGTGATCTCCAG 59 25930773 25930791 TAGAAGGAGGAACAGTGGC 59 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 1 1 1 62 4 120157484 120157502 GAACGGACATGAACGTGTG 60 120157528 120159019 CTTGGGATACCTGGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1561206 ENSRNOG00000016331 ENSRNOT00000021855 2 1 1 60 1 195440624 195440642 AGACAGAAAGCAAACAGGG 58 195440582 195440600 GATCACTCCAGATCCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm2 ENSRNOG00000047085 ENSRNOT00000075420 3 1 1 128 18 28017621 28017639 CAGAAAGCAGGAAACTGGT 58 28017177 28017530 CCACTTGAAATGTAAGCCCA 59 NA InUTR Rattus norvegicus 81 Rn60_X_0637.1 ENSRNOG00000051209 ENSRNOT00000076071 2 1 1 60 X 63031575 63031595 GAGAAGAGAAAGGTCTCTGTC 58 63031615 63031635 CCTAGAGAAGGATTGAGACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036746.1 ENSRNOG00000052909 ENSRNOT00000071634 1 1 1 60 X 1543529 1543548 GGCTTCTGTTACGAGATGAG 58 1543567 1543589 CCTGAATAATGACGTTGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360117 ENSRNOG00000032635 ENSRNOT00000041984 2 1 1 60 3 3390055 3390073 ACCCAGAGACCAAGAAGAC 59 3390095 3390115 GAGGAAATGACCTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H2afb3 ENSRNOG00000029736 ENSRNOT00000043727 2 1 1 60 X 88602360 88602379 CAACGAAGAGGTACCCAGAG 60 88602402 88602420 TGCTGTAGACTGCCAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mob4 ENSRNOG00000014980 ENSRNOT00000020536 2 1 1 80 9 61733549 61736624 GAACATTTAAGGCAATTCTGCC 59 61736857 61736877 AGTACAAGTATCAGGATGGCA 59 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 2 2 2 80 4 118553924 118553942 GTCTGATTGAGATCCTGGC 58 118551879 118553880 TCCTTCCATATTGCTGCTG 58 NA Rattus norvegicus 81 Sox9 ENSRNOG00000002607 ENSRNOT00000003511 1 1 1 122 10 101289164 101289182 CATGAACGCCTTCATGGTG 60 101289268 101290103 CTCTCGTTCAGCAGTCTCC 60 NA Rattus norvegicus 81 Mrpl17 ENSRNOG00000019497 ENSRNOT00000050562 1 1 1 80 1 170653133 170653399 CTGGCTCACTGAGAAGGAC 60 170653071 170653090 GTGTAGTTGCCATTCTGACC 59 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 1 2 2 80 1 100660248 100665446 ACTCTGGGCTCATTTATACCT 58 100660188 100660206 CCTCCGTGTAGATAGGCAG 59 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000084852 3 1 2 121 8 91099564 91099582 CCATGTCGGAGGAACAGAG 60 91099664 91115258 GTCATAGTCTCCACAGTATCGA 59 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 2 2 2 85 17 38712538 38713747 AGTTCCAACTGGAAGTACTACTG 60 38712475 38712493 CATTTCAGCCCACAGATGG 59 NA Rattus norvegicus 81 Mrps23 ENSRNOG00000010363 ENSRNOT00000013771 2 1 1 83 10 75535130 75535150 TCAACCTATGGATCTGGTCAC 59 75535195 75535418 GTACTTCTCCACAAACCGC 59 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 2 2 2 80 1 83191363 83192675 AATCATCAGGGAGTCTCCC 58 83192719 83192737 TCCAAAGACAATGGAGCAG 58 NA Rattus norvegicus 81 Ankrd40 ENSRNOG00000002935 ENSRNOT00000067751 3 1 1 82 10 82038368 82038721 TATGGGAGTGGAAGAAGCT 58 82038767 82038785 GATAGTTGGGAACGAAGGG 58 NA Rattus norvegicus 81 Mir3589 ENSRNOG00000036269 ENSRNOT00000054392 1 1 1 60 X 143516997 143517017 GAACTTGGTGATACTCCAGAG 58 143517039 143517057 ATGTTTCTGCCAGGTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem100 ENSRNOG00000002434 ENSRNOT00000003297 3 1 1 80 10 77537348 77540253 CTGAGAAAGAGGCAATCCCT 60 77540295 77540314 GTCTCGTTCAACTTCTGGGA 60 NA InUTR Rattus norvegicus 81 LOC100910077 ENSRNOG00000030000 ENSRNOT00000040297 2 1 1 60 8 42613656 42613677 AATATACAGAGACCCATTTCCC 58 42613697 42613716 ACCGTGATAACATAGATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scrt2 ENSRNOG00000005148 ENSRNOT00000006833 1 1 1 257 3 147597078 147597096 CATTTCTGATGGGCGTTCG 60 147597317 147597335 ATAGACACGTAGGCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910689 ENSRNOG00000046318 ENSRNOT00000072294 3 1 1 80 10 78171045 78171063 TCACCTTCAATGCTGACGT 60 78171104 78172706 CTCCTGGTACCACATAGATCTC 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 3 6 7 103 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610921 215611167 GTTCATGTCTTCCAGCTCC 58 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 3 3 3 80 12 8091946 8091966 TTTGTGAAAGGCTCCATTGAG 59 8092007 8094726 CACGTTTGTGTCATTGTTCC 58 NA Rattus norvegicus 81 LOC103691445 ENSRNOG00000054595 ENSRNOT00000090178 2 1 1 60 2 35531947 35531966 TTGCTGTTTCAGAATGTCAC 57 35531906 35531925 GATATAGCCACATAGCGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 1 2 2 80 X 34669396 34671799 CAGTCATTCACAGATCCAAGAG 59 34671837 34671858 GAACTCTTGATTTGCTTCTGAC 58 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 2 2 2 80 X 34669397 34671799 AGTCATTCACAGATCCAAGAG 58 34671839 34671859 GGAACTCTTGATTTGCTTCTG 58 NA Rattus norvegicus 81 AABR07007932.1 ENSRNOG00000052652 ENSRNOT00000084377 1 1 1 60 2 35549409 35549428 ATTCATGTACCTTCAGCCCT 59 35549368 35549386 CACAGACGACACTTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir103-1 ENSRNOG00000035503 ENSRNOT00000053626 1 1 1 60 10 20606727 20606745 TCGGCTTCTTTACAGTGCT 59 20606768 20606787 CATAGCCCTGTACAATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a12 ENSRNOG00000026387 ENSRNOT00000036564 2 1 1 80 1 227405825 227405844 TTGGAATTCAGCATAGCGTG 59 227405583 227405782 AGCAACCAGGACAGATCTG 59 NA Rattus norvegicus 81 AC115420.1 ENSRNOG00000040249 ENSRNOT00000059520 3 1 1 60 4 157416941 157416960 AGGAGGAAGAGGAGGAAGAG 60 157416982 157417001 TCTTCTTCCTCTTCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il5 ENSRNOG00000008111 ENSRNOT00000010729 1 1 1 94 10 39066844 39067385 GAGCAATGAGACGATGAGG 58 39069311 39069332 GATTCTTCAGTATGTCTAGCCC 58 NA Rattus norvegicus 81 Zmym2 ENSRNOG00000008734 ENSRNOT00000011684 3 1 1 80 15 37206045 37206101 ATGTCAAGAAAGTATCAGGGC 58 37209505 37209523 GTTTGGTGTAGGAGAAGGG 58 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 3 1 2 81 5 74972259 74981654 GGATGATAGTAGTGTCCTGGAG 59 74981696 74981714 ATAAATCCCTGCCTCCCAG 59 NA Rattus norvegicus 81 Foxa1 ENSRNOG00000009284 ENSRNOT00000009940 3 1 1 67 6 78549554 78549572 ACTGGAACAGCTACTACGC 60 78547256 78547274 GGAGTTCATGTTGCTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 2 2 2 80 17 39546325 39547345 AATCTCTAGGAAGTGATCCGA 58 39547384 39547405 GATGATTTAGAGCATTGGTCCA 59 NA Rattus norvegicus 81 Daxx ENSRNOG00000000477 ENSRNOT00000000559 2 1 1 80 20 5482605 5482624 CCACCGAAGATGAAGATGAG 58 5482384 5482565 CTTCATTATCTCCTTCCTCCTC 58 NA Rattus norvegicus 81 Rnf169 ENSRNOG00000026408 ENSRNOT00000029629 2 1 1 80 1 164923932 164923952 GTGACACAATTCAGGACAGAG 59 164923243 164923895 CTGGAGTTATAGTTGTGATCTTGG 59 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 2 2 2 80 1 257427275 257427296 TTGAGTACAATGAAGAAGTCCC 58 257427336 257428347 CCATGTCATAGACCTTTCCC 58 NA Rattus norvegicus 81 Brsk1 ENSRNOG00000017673 ENSRNOT00000031172 1 1 1 80 1 72706830 72706848 TGTGGTAGAGACCATCCAG 58 72701930 72706786 CCATTCTTCTCATCTGCCA 57 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432,ENSRNOT00000077624 1 2 2 80 4 119924582 119927654 GACTCTGGTGTTGGAAAGAC 59 119924521 119924541 TCCTATTGTGGCTTTGTACTG 58 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 3 2 2 80 8 21951996 21952015 GAGAGTCTGTGGAGAAACCT 59 21950500 21951954 TGTCATCTTCCTGTTCACCT 59 NA Rattus norvegicus 81 RGD1559536 ENSRNOG00000039250 ENSRNOT00000060113 2 1 1 82 X 42952703 42953619 GTTCAGGCGTCCAGTAGAG 60 42953665 42953683 CATTGGTTGCACAGACTGG 60 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 3 2 2 80 1 177214069 177225634 TGAGAGGAGAAACAGATTCAG 57 177225675 177225694 TATTCTTCTCCAGAACCAGC 57 NA Rattus norvegicus 81 Olr148 ENSRNOG00000016993 ENSRNOT00000022789 2 1 1 60 1 169305662 169305682 TCAACCATACTGTCATAGCCC 60 169305704 169305722 ACAATAGCCACACTACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifitm2 ENSRNOG00000014936 ENSRNOT00000020216 2 1 1 82 1 213751149 213751168 TCTGGTCCCTGTTCAATACG 60 213750535 213751104 GTCCCTGGACTTCACAGAG 59 NA Rattus norvegicus 81 Dbnl ENSRNOG00000012378 ENSRNOT00000017375 1 1 1 80 14 86036541 86039077 GCCAACTTCCTAAAGGGTG 59 86039120 86039139 CTTCTCCATGATGCACTCAG 59 NA Rattus norvegicus 81 AABR07073531.1 ENSRNOG00000038397 ENSRNOT00000058474 3 1 1 82 X 45596477 45596881 CATGGTAACTTCCAGGCCT 59 45596413 45596432 CGGATGATGTCATCCTTGTC 59 NA Rattus norvegicus 81 Olr1320 ENSRNOG00000058809 ENSRNOT00000090359 3 1 1 60 8 43628583 43628603 CACCATGTCTTACCAAGTCTG 59 43628623 43628643 AATGAAGCCCATACCATACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd1 ENSRNOG00000024335 ENSRNOT00000036585 1 1 1 80 3 55940679 55942197 CTTCTCAGTCGTTTGGAAGC 59 55940618 55940638 AGGATATGGAAGCATGGAGAG 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 1 5 6 80 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550367 157550385 TGTGTATGCTCGGTGACAG 60 NA Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 3 1 1 66 8 38154249 38154268 TATCTTGCTGCTCCTACTGG 59 38153337 38154220 CTCAAAGCACACCAAAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef5 ENSRNOG00000005506 ENSRNOT00000044780 3 1 1 80 4 72730105 72731381 CGCACTGAGACTCAAAGTG 59 72731423 72731443 ACACTCAAGTAGGTCCAACTC 60 NA Rattus norvegicus 81 AABR07018269.1 ENSRNOG00000031720 ENSRNOT00000041154 2 1 1 80 15 49666826 49666844 AAAGCTGACCAAATGGCAG 59 49666145 49666782 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Scgn ENSRNOG00000016628 ENSRNOT00000022329 3 1 1 80 17 43367108 43370076 CTGATGAAAGAGCTTGCCAG 59 43370119 43370137 ATCCAAGGGAGTTTCCAGG 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599,ENSRNOT00000004577 2 2 2 80 13 80693274 80694662 CAGCACAGGTGTTTCTCAG 59 80693212 80693232 TCATATTCAAAGGGTAGCCAC 58 NA Rattus norvegicus 81 Rfx7 ENSRNOG00000060367 ENSRNOT00000086841 1 1 1 83 8 79268287 79271511 ACCAGCAGGACTTAAAGGA 58 79271555 79271576 GTCTTTACTTGAGGTTGAAAGG 57 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000057073 2 1 2 121 1 85299514 85299532 GAACTTACGTCCAGCTCTG 58 85292554 85299431 GGGATCATCCTGTAGACTAGG 59 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327,ENSRNOT00000086899 1 2 2 80 16 54804138 54804158 GTGAAGAATACAAGCGAATGG 58 54804198 54814927 AGTCACAAACTCTGTAGTCTC 57 NA Rattus norvegicus 81 Scnn1a ENSRNOG00000019368 ENSRNOT00000067271 3 1 1 80 4 157847886 157853164 AACCAGGCGAATTATTCCA 57 157853206 157853226 GAGATTGGAGTTGTTCTTGTC 57 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 1 1 1 60 1 239209399 239223102 CTGTCAAAGCCTAAGAAATGTG 58 239209360 239209380 TGTGGTAAGAGTCCTTTACTG 57 NA DesignNoJunction Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678,ENSRNOT00000028585 1 2 2 80 1 89384640 89384749 TATCTTCAGAAGTACGAAGTGG 58 89384581 89384603 TCTCCATATAGTATAGGACCCTC 58 NA Rattus norvegicus 81 Rpap1 ENSRNOG00000005483 ENSRNOT00000007299 3 1 1 81 3 111583285 111583303 TCACGATGAAGACCCTGAG 59 111582992 111583243 ATCCCGTTCAACAATCTTAGAC 59 NA Rattus norvegicus 81 Capg ENSRNOG00000013668 ENSRNOT00000018562 1 1 1 82 4 100414159 100414361 CTCAAGTATCGGGAGGGTG 59 100414407 100414425 TAGAGCTTCCTGATGGCTG 59 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188,ENSRNOT00000079598 2 2 2 80 11 47224712 47224733 TATCAAGATGCCAATCAACTCC 59 47224774 47232863 TCTGGGTCATCAGTTTCCT 58 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242,ENSRNOT00000007069 3 2 2 80 3 51782775 51782796 GCCTTAGTTTAATGGAACTCGG 60 51782837 51784670 TGAAGACTCTAAGCAGCCG 60 NA Rattus norvegicus 81 Rrp1 ENSRNOG00000001203 ENSRNOT00000001597 2 1 1 80 20 10989917 10989935 AAGTAGGGCTGACCTTGAG 59 10989978 10990704 TCGTAGTCAAACTGGAGGAC 59 NA Rattus norvegicus 81 Olr1222 ENSRNOG00000030341 ENSRNOT00000042601 3 1 1 60 8 41936969 41936989 CTGTGGAGAATGACTCTTCTG 58 41937009 41937029 TCAGGTTGGTCTGTTAATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tceb3 ENSRNOG00000010902 ENSRNOT00000064596 1 1 1 80 5 154355645 154357075 TAGACATTCTTGTGGAGACTGG 60 154355586 154355604 CTCTGGCAAAGTTTCCCAC 59 NA Rattus norvegicus 81 Jak2 ENSRNOG00000059968 ENSRNOT00000087011 3 1 1 80 1 247451782 247455103 ATATTCTGGTATGCTCCCGA 58 247455146 247455164 CAGAACCACACCAAAGCTC 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 1 1 2 80 15 5808186 5808342 ATTCAGCAGGTCTTGGTCC 60 5808386 5808404 TCGGTTGAAGGTTCTGGTC 60 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 2 1 2 80 15 5808183 5808340 GGTATTCAGCAGGTCTTGGT 60 5808383 5808401 GTTGAAGGTTCTGGTCCCA 60 NA Rattus norvegicus 81 Flna ENSRNOG00000054890 ENSRNOT00000079889 3 1 1 80 X 156469010 156469123 AACAGGAACTCATAAGGTGAC 58 156469164 156469183 GACTTGTCCACATACACCTC 58 NA Rattus norvegicus 81 LOC100360397 ENSRNOG00000011304 ENSRNOT00000015016 3 1 1 115 1 248647923 248647941 CTTCTTCCTTCACCAGCGA 60 248648017 248649441 TTAGTTTCATCTGGCTTCAGGA 60 NA Rattus norvegicus 81 Pcdh17 ENSRNOG00000008970 ENSRNOT00000045882 2 1 1 80 15 67588826 67643253 CAACCACTTGAACAAGAACC 58 67643293 67643314 CCAACATCTATCAGAATGACCA 58 NA Rattus norvegicus 81 Rapgef6 ENSRNOG00000009995 ENSRNOT00000013481 1 1 1 80 10 39978261 39978281 TTGTAGAAGTAGTGGAGCCTG 59 39978320 39982052 GCCCATTGACTTCCATTATCTG 60 NA Rattus norvegicus 81 Dgkd ENSRNOG00000023238 ENSRNOT00000035338 2 1 1 80 9 95060179 95060199 GCTTGGACGCAAAGATATCTC 60 95060240 95061164 TGTTCTTAGTCCGACTCCTG 59 NA Rattus norvegicus 81 Hpcal1 ENSRNOG00000005492 ENSRNOT00000007374 3 1 1 81 6 43102322 43102340 CCTTCAGCATGTACGACCT 60 43102385 43103933 ATCTTGTAGATGGCCTGCA 59 NA Rattus norvegicus 81 Pnpla1 ENSRNOG00000028622 ENSRNOT00000033064 1 1 1 80 20 6123411 6123433 CAGTTCTCCTTGGAGAATATCAC 59 6123468 6124222 GTAGTAATATTCCTGCAGGATCAC 59 NA Rattus norvegicus 81 Fhl2 ENSRNOG00000016866 ENSRNOT00000023014 1 1 1 105 9 49949993 49950011 CTAAAGGAGGAGAACCCGC 60 49938454 49949924 AGGACAAGTCCTTGCAGTC 60 NA Rattus norvegicus 81 Stmnd1 ENSRNOG00000031595 ENSRNOT00000051732 1 1 1 80 17 18812679 18817009 TAAATTCAGACCCAGTGGC 57 18812617 18812636 TGTCTGATGACTTTGGTCTC 57 NA Rattus norvegicus 81 LOC100909919 ENSRNOG00000031054 ENSRNOT00000048537 3 1 1 60 8 42664221 42664240 GTTGTGGTCTTTGTTCTGGT 59 42664263 42664281 AGACAAACGTGGTACTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acer2 ENSRNOG00000007637 ENSRNOT00000010056 1 1 1 80 5 105243345 105244073 TAGTTGTAGTGGGAATCGGA 58 105244115 105244134 GAATGGCAAGTTCATCAAGC 58 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000083381 2 1 2 102 15 45712980 45718134 GAAGGCTTGCATGTCATCC 59 45718199 45721084 CTGTAGTCGGACTTAGTGGG 59 NA InUTR Rattus norvegicus 81 Mir3563 ENSRNOG00000035507 ENSRNOT00000053630 2 1 1 60 6 133859355 133859374 ACCGTCCCACATACATACTC 59 133859314 133859333 GCGGTACTTGAAGAAATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263 1 1 2 80 8 102127403 102139609 CCGAAAGTACCCATTATGAACC 59 102127344 102127363 TCATGATTGCCAAGATCCGT 60 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263,ENSRNOT00000086491 1 2 2 80 8 102146738 102146757 GGTAATCATTGTGGATGCTG 57 102143550 102143568 ACATCCCAATTCTCAGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Oxct1 ENSRNOG00000043094 ENSRNOT00000065313 2 1 1 80 2 53923611 53925391 GATGGCATGTATGCTAACCTG 59 53925430 53925451 GAGATGAACAGTCATGTTTGGG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 1 2 2 80 4 61461002 61463016 CAATTCAGACCAAACCCGA 58 61463057 61463078 TAATCTTCTGCTGATCTAGCTC 57 NA Rattus norvegicus 81 S1pr2 ENSRNOG00000020653 ENSRNOT00000028034 1 1 1 149 8 21995777 21995795 AACAGTCACCAAAGTCAGC 58 21987494 21987512 TCTGAGTATAAACCGCCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam175a ENSRNOG00000002165 ENSRNOT00000002956 2 1 1 80 14 10424796 10426826 CTGACTCAGATACGGAGGG 59 10426869 10426888 TGTCCATCTGTGAGTCAGTG 60 NA Rattus norvegicus 81 Fem1b ENSRNOG00000007077 ENSRNOT00000009368 2 1 1 149 8 67707932 67707950 CTATGTCAGTCAGCAGGGA 59 67696727 67707819 TCAATGACATACCCGTCGA 59 NA Rattus norvegicus 81 RGD1306995 ENSRNOG00000042555 ENSRNOT00000030268 1 1 1 81 11 64489075 64489098 CACAAACAAAGTGTACTATCCCTC 60 64489133 64490036 CTCAAGTTCTGTAGTGATATCAGC 59 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000013874 ENSRNOT00000018820 1 1 1 80 8 66863342 66863360 TTCTGTCTCTGAGCTTGCC 60 66862871 66863300 TTGATCTTATCCTCCGTGACC 59 NA Rattus norvegicus 81 Espl1 ENSRNOG00000012835 ENSRNOT00000017314 2 1 1 80 7 143922135 143922337 TCAATCGCTAAGGAGGCTG 60 143922379 143922399 AGGGTTTAGCACATAGAAGGT 59 NA Rattus norvegicus 81 Cdk15 ENSRNOG00000022899 ENSRNOT00000071819 1 1 1 80 9 66059741 66059763 AGAACTTGAGAAGGGTGAAGG 60 66064800 66064820 TTTAGAGCTACCAGTTGTCCA 59 NA Rattus norvegicus 81 Acox3 ENSRNOG00000008474 ENSRNOT00000049798 1 1 1 80 14 80341328 80341346 TCACCGAACTGAGTCATGG 59 80338217 80341285 AGATGAATTCCTGGGTAGCA 59 NA Rattus norvegicus 81 AABR07012323.1 ENSRNOG00000046752 ENSRNOT00000074852 2 1 1 98 2 193286800 193286818 CAAAGAGCACAGCACAGTG 60 193286880 193294489 TTGTAGCACAGCAGGACTC 60 NA DesignRelaxed Rattus norvegicus 81 Mul1 ENSRNOG00000016010 ENSRNOT00000021833 3 1 1 93 5 156859649 156859668 GTTTGTGGAGAACTGCAAGG 60 156859723 156860704 ATAGTCATTCCACAGGTGGG 59 NA Rattus norvegicus 81 LOC686066 ENSRNOG00000031434 ENSRNOT00000040570 3 1 1 60 3 8955419 8955437 GTTCAAGGTCCACTGTAGC 58 8955377 8955401 CTTCTTCTCATTGTCTGTGATAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367117 ENSRNOG00000031132 ENSRNOT00000046322 1 1 1 80 8 86284747 86286968 AGCAGCTGTGTTTATCAATGAC 60 86284688 86284708 TGGTAGCACACTATTGTCCTG 60 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 1 2 2 80 19 23937395 23937793 CTTAGCATGTCAACACGCTC 60 23937334 23937353 AGCATCATACCCAGAAGCTC 60 NA Rattus norvegicus 81 Pex11g ENSRNOG00000028100 ENSRNOT00000037564 2 1 1 103 12 2003569 2003587 CGATGCTAAGGTCCTCCAG 60 2001973 2003502 TTGTCCACAGGGACTTGAC 60 NA Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 2 1 1 64 10 62008890 62008908 CTTGGCTTATGGTGAGCCT 60 62008844 62008862 CTTTGCCACATGGAATGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts8 ENSRNOG00000005574 ENSRNOT00000007358 2 1 1 81 8 32018935 32018955 GCTTCGTGGAAATACTTCTGG 59 32018997 32026321 ACTGTGAGGATGTGGTTCTG 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162,ENSRNOT00000091236 1 3 3 80 10 38891769 38892620 ATAGCAAGGTGAACATAATCCC 58 38892658 38892679 TCTTGATCTTGAACTTGTGGAG 58 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520,ENSRNOT00000052315,ENSRNOT00000078619 1 3 3 80 1 220857894 220857912 ACTCCTATGGGACCTTCCT 59 220857955 220859648 CATCGATATCACTGCAGGAG 58 NA Rattus norvegicus 81 Commd5 ENSRNOG00000050582 ENSRNOT00000075405 3 1 1 60 7 117964045 117964064 TAGTCTAAAGCCAGATGCCT 58 117964087 117964105 TAGATCCTGAGGAATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 2 2 2 80 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093297 AGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 1 1 1 80 2 225861347 225862935 GAAACAGCGCAGGAAAGAG 60 225862979 225862997 AGTTCGTCTGTCAGTTCCG 60 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 2 3 3 83 17 23175161 23177433 GAGCATCATCAGCTGAGTC 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 1 1 1 80 3 8032857 8032875 ATGAGGAGCCTGTTCATCG 60 8032917 8041829 TATGTCTAGCTTTCCGTCCTC 59 NA Rattus norvegicus 81 RGD1563383 ENSRNOG00000048925 ENSRNOT00000072026 1 1 1 60 X 49530119 49530138 TAGATGGAATGACCTGCCTC 59 49530078 49530099 AGGGTATAAGATGAAGTGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2448.1 ENSRNOG00000051301 ENSRNOT00000075935 1 1 1 60 1 237441577 237441597 TCCTCCAAGTTATCAAGTCCA 59 237441619 237441637 ACCACACCCTTATCTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690273 ENSRNOG00000053485 ENSRNOT00000088755 2 1 1 60 8 43523355 43523374 CCATTGATCTACAGCCTCAG 58 43523314 43523332 GACGTAGGACAATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 2 1 2 80 2 60563578 60564085 AGGATGCTGATTTAAAGACCC 58 60562467 60562487 GAGTTCCACTTCTTTCTGAGC 59 NA Rattus norvegicus 81 LOC100912263 ENSRNOG00000049014 ENSRNOT00000071400 3 1 1 82 1 71338882 71338900 GTTCCTGACTGGGAAGAGG 59 71335805 71338836 CTGAGGGAAAGAGCAGGAC 60 NA Rattus norvegicus 81 Olr1321 ENSRNOG00000055420 ENSRNOT00000085286 2 1 1 60 8 43645026 43645044 ATTGACCTCTGCCATTCCA 59 43645068 43645086 TCACTGCCACAAAGTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 1 2 2 80 9 66507349 66507368 AATGGATGGCTTGATTCCTG 58 66507411 66508975 TATCGAGATAGGCTGTGGG 58 NA Rattus norvegicus 81 Hspa9 ENSRNOG00000019525 ENSRNOT00000026696 2 1 1 80 18 27734094 27734112 TGACATTGATGCCAATGGG 59 27732961 27734053 GACTGGATTACAATCTGTTGCT 59 NA Rattus norvegicus 81 Olr1737 ENSRNOG00000048048 ENSRNOT00000040388 2 1 1 60 20 1782080 1782101 TTCTCTTCACCTACATCTGTCC 59 1782120 1782140 GCAATGATTCTGTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1350 ENSRNOG00000030424 ENSRNOT00000052361 1 1 1 60 9 99753950 99753968 CTACACCCTGGTCATTCCC 60 99753991 99754010 CACATCCTTGTTCCTCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 2 1 1 70 2 54962607 54962625 TCTTACTCATCGCCACCTC 59 54953400 54962573 GTTGATGAACACTCGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp518b ENSRNOG00000028534 ENSRNOT00000037291 3 1 1 60 14 76866676 76866697 GAAATGAAACGGAAACCATCTC 58 76866718 76866736 GGCTTGAAGTTCCTAACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1735 ENSRNOG00000050043 ENSRNOT00000048856 1 1 1 60 20 1750475 1750497 GTTCTCTTTAACTACATCCGTCC 59 1750516 1750535 CAATGATTCGCTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpysl4 ENSRNOG00000027582 ENSRNOT00000029587 2 1 1 80 1 211428948 211428966 CTTACACGTGGACATTCCC 58 211429010 211430604 GAGTTCACACCTTTGTCCC 58 NA Rattus norvegicus 81 Itga11 ENSRNOG00000006723 ENSRNOT00000008971 3 1 1 80 8 67665168 67665186 ATGCTTACAGTGCAGTCCT 59 67665229 67668998 TGTCTGAGTCATCCTTCTGG 59 NA Rattus norvegicus 81 LOC499542 ENSRNOG00000032427 ENSRNOT00000046481 3 1 1 87 2 61756296 61756317 TTTACAAGGACTTCAATGTGGG 59 61752630 61756248 GAAACAGTTCTGGTGCCAG 59 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 1 3 3 80 2 158091957 158091975 GAGCAGACAGAACAGTACC 58 158083024 158091913 ACATTTCTGAACCACCTCC 57 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777,ENSRNOT00000085681 1 2 2 80 10 81808991 81809010 AAGTCTGGTGTGGCTATAGG 59 81809050 81811401 GGTGTGCATCAAATGATTTCTC 59 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 3 2 2 81 3 5720480 5720774 CACTTTCAGGAGATCAGAATGC 60 5721198 5721217 TGTTGTATGTGCACGAAGTG 59 NA Rattus norvegicus 81 Pcdhga2 ENSRNOG00000034126 ENSRNOT00000043154 1 1 1 60 18 30815886 30815904 AATATGCCCGTAGGAACCC 59 30815926 30815946 TGTATCCCTCATCAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lama5 ENSRNOG00000053691 ENSRNOT00000081226 1 1 1 80 3 175555070 175555186 ACAGCTCAGAAGGTTTCCC 60 175555008 175555026 AATAGTCCCAAGGAGCCAG 59 NA Rattus norvegicus 81 Pcdhgb8 ENSRNOG00000027220 ENSRNOT00000026967 1 1 1 63 18 30911847 30911865 AGTGAGTGTCACTGAGGAG 58 30911892 30912589 TGCTTGGTGGTTAGAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Foxp1 ENSRNOG00000009184 ENSRNOT00000013271 2 1 1 80 4 131391619 131403379 GTTAGAGCTACAGCTTGCA 58 131391557 131391576 TTGGGTTCTGTAGACTTCAC 57 NA Rattus norvegicus 81 Ly6d ENSRNOG00000026133 ENSRNOT00000036268 2 1 1 83 7 115994025 115994044 CAGCAGTGACAACTGTAGGA 60 115993814 115993979 TTCAGAGGCTCCACTTTGG 60 NA Rattus norvegicus 81 Olr1253 ENSRNOG00000046873 ENSRNOT00000044859 2 1 1 60 8 42377046 42377065 AACTTGGCCTTTGTAGACCT 59 42377005 42377025 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 2 1 1 80 3 147743573 147743592 ACATTGTGAAAGACCCTGTG 58 147744097 147744888 GGTACAATTGCTTGAAGTCTG 58 NA Rattus norvegicus 81 Ddx1 ENSRNOG00000006652 ENSRNOT00000009100 1 1 1 80 6 38447786 38447808 AGTGTATGAGACTCTGAAAGACC 60 38446259 38447746 TTGTTGAGCACAGAAGCAC 59 NA Rattus norvegicus 81 Thsd7b ENSRNOG00000003878 ENSRNOT00000005212 3 1 1 80 13 46342834 46342858 CTATAGAGATAGGTTTCCAAACCAG 59 46342894 46362354 GCATACAAAGGCTTAACAGGG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000081496,ENSRNOT00000021278 2 3 6 60 1 262013560 262013580 CTCTTCTACTGGACGGATGAG 60 262013520 262013538 CTGACTGCCTGAACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000010377 3 1 2 91 4 78074720 78075372 CTCTTTGGGATTCTCAGTGG 58 78074648 78074668 TAGATGACATCTTCTCCTGGG 59 NA Rattus norvegicus 81 Trim27 ENSRNOG00000055917 ENSRNOT00000077363 1 1 1 80 17 45614699 45615490 GAGGCTCAATTATACTCAGTTGAC 59 45614642 45614666 CCGAAGATTATCTGAAAGAATCAGG 60 NA Rattus norvegicus 81 Klk1c8 ENSRNOG00000048901 ENSRNOT00000072124 2 1 1 82 1 100040337 100040718 TATGCAAGGGTGACTCAGG 59 100040764 100040782 ACCACATGGCATAGAACCC 60 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 1 2 2 83 19 25953641 25955248 TGATGAGACGGTGAAGGTG 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Xrcc2 ENSRNOG00000007493 ENSRNOT00000010025 1 1 1 80 4 5849793 5849811 GACTTGAAGGCAGAAGCTC 59 5849855 5857215 GAATATCACCGTGCACTGG 59 NA Rattus norvegicus 81 Xrcc2 ENSRNOG00000007493 ENSRNOT00000010025 2 1 1 81 4 5849793 5849811 GACTTGAAGGCAGAAGCTC 59 5849856 5857216 AGAATATCACCGTGCACTG 58 NA Rattus norvegicus 81 Mageb16 ENSRNOG00000029408 ENSRNOT00000042568 1 1 1 116 X 47009348 47024045 TCAAACAGTGAGCTGTTGC 59 46979157 46979180 GCATATTCTGGATTCTTCTGAGAC 60 NA InUTR Rattus norvegicus 81 LOC100911274 ENSRNOG00000012705 ENSRNOT00000017241 1 1 1 80 10 85636049 85636069 CTTGGAGACCAACAAATACTG 57 85635811 85636008 TTGTCTGATCTGATGCTGAG 57 NA Rattus norvegicus 81 LOC100911274 ENSRNOG00000012705 ENSRNOT00000017241 2 1 1 80 10 85636048 85636068 TTGGAGACCAACAAATACTGC 59 85635810 85636008 TTTGTCTGATCTGATGCTGAG 58 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000088770 1 1 2 64 19 41010090 41010108 CAACCCTGAGGATTCCCTG 60 41004670 41004688 TTTCCTTTCACTTGCCAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr234 ENSRNOG00000033512 ENSRNOT00000051038 3 1 1 60 1 171274869 171274888 TCAGCAGATACTTACAGCAC 58 171274910 171274929 CTAGGAGGATTACCACACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 2 3 3 80 5 151051033 151052228 CTCATTTGACAGCCATGAGG 59 151050972 151050990 AGTTCCAGGTCTTGCTCAG 59 NA Rattus norvegicus 81 Gmfg ENSRNOG00000019838 ENSRNOT00000026891 1 1 1 81 1 85313090 85313108 CTGCAAGCCTGAACAACAG 60 85312641 85313048 TTCAAACACCTTTGTAAGCTCC 60 NA Rattus norvegicus 81 Oprk1 ENSRNOG00000007647 ENSRNOT00000010254 1 1 1 80 5 13749934 13749952 TGGCTACTGGCATCATCTG 60 13746509 13749893 TTCAATGACATCCACATCTTCC 59 NA Rattus norvegicus 81 LOC102556121 ENSRNOG00000045669 ENSRNOT00000072482 2 1 1 110 10 81984637 81984655 AAGTTACCAGAGCCTCCTC 58 81984729 81985775 ATGTCTTTGTCCTTCCGGA 59 NA Rattus norvegicus 81 LOC102556121 ENSRNOG00000045669 ENSRNOT00000072482 3 1 1 111 10 81984635 81984655 TTAAGTTACCAGAGCCTCCTC 59 81984728 81985774 TGTCTTTGTCCTTCCGGAG 59 NA Rattus norvegicus 81 Stub1 ENSRNOG00000019798 ENSRNOT00000026921 1 1 1 85 10 15198453 15198656 CCAAGCACGATAAATACATGG 58 15198302 15198321 GTAGTCAGGGATATCTCGCT 58 NA Rattus norvegicus 81 Stub1 ENSRNOG00000019798 ENSRNOT00000026921 2 1 1 86 10 15198453 15198656 CCAAGCACGATAAATACATGG 58 15198301 15198320 AGTAGTCAGGGATATCTCGC 58 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063,ENSRNOT00000080655 3 2 2 81 17 45256560 45256581 GGATTCATCTCAGATGAACCTC 58 45256623 45261709 TTGCATGTTCTCATCCAGG 58 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 1 2 2 80 7 116701682 116702379 TGTAGCAGAGATTCCAAGATCC 60 116701623 116701642 CCACATGACTGTGTTATCCG 59 NA Rattus norvegicus 81 Tlr9 ENSRNOG00000048161 ENSRNOT00000074194 3 1 1 116 8 114916215 114917034 TCCATCATGGTTCTCTGTCG 60 114917112 114917131 CAGTTCACAGGGTAGGAAGG 60 NA InUTR Rattus norvegicus 81 Mir3547 ENSRNOG00000047763 ENSRNOT00000071303 3 1 1 60 10 14603222 14603240 ACTTCCAAGGTGGGAAGAG 59 14603180 14603201 TCAAGAATAGTCCTCACATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a25 ENSRNOG00000017964 ENSRNOT00000024234 3 1 1 80 1 224613258 224668194 TGTCCCTTGTGAGATTTGTG 58 224613197 224613218 GGAAGACATTGATCCTTAGGTG 59 NA Rattus norvegicus 81 Pycr2 ENSRNOG00000003267 ENSRNOT00000004379 1 1 1 80 13 99185015 99185035 GTCGGCTCACAAGATAATAGC 59 99185076 99186199 AGATTCACACCCATCTTCCT 59 NA Rattus norvegicus 81 Polr3e ENSRNOG00000016960 ENSRNOT00000040963 2 1 1 80 1 190859217 190862153 CTCTTTCAGTATCCTGTTCGTC 59 190862193 190862212 CTGTTTGGGCTTGATCTTGG 60 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 1 1 1 80 10 39336841 39336860 CATTTGGACCTGTTCAAGGA 58 39335177 39336799 CACTGAGGTTACATCTGCAC 59 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 3 1 1 80 10 39336850 39336868 AAGTGCTTCATTTGGACCT 57 39335185 39336806 TTACATCTGCACAGCATCC 58 NA Rattus norvegicus 81 Rn60_X_0554.1 ENSRNOG00000029005 ENSRNOT00000050742 2 1 1 60 X 55114132 55114152 TCAAGGCAATATCATCACCAG 58 55114092 55114110 GTTCACCATGTTCTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363537 ENSRNOG00000047067 ENSRNOT00000071701 1 1 1 80 4 6029700 6029721 TCAAGTTCCACATCAAGTTCC 59 6029763 6029781 CGTCATCGGTCATCTTCAC 58 NA Rattus norvegicus 81 RT1-M6-2 ENSRNOG00000040052 ENSRNOT00000041500 1 1 1 80 20 2078119 2078137 GGGAGGAGCAGAAATACAC 58 2078180 2078320 AAGTTGCTGGTTTCCATCTC 59 NA Rattus norvegicus 81 Shpk ENSRNOG00000019458 ENSRNOT00000026351 3 1 1 80 10 59783161 59787949 ATGACAGACCTAGGTCTGG 58 59787993 59788011 GGTATCTTTCTGCTGTGCA 58 NA Rattus norvegicus 81 Rgl2 ENSRNOG00000000474 ENSRNOT00000000554 2 1 1 82 20 5460837 5460855 TATGACCTCCGACCTAACC 58 5460662 5460791 GATACACGGTGACTCTGAG 57 NA Rattus norvegicus 81 RGD1565410 ENSRNOG00000037375 ENSRNOT00000082405 2 1 1 80 7 116501812 116503573 GAAGCTGTAAAGGACTCTGTG 59 116501752 116501772 AGTTCTTTGAGGAAACTTGGG 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597,ENSRNOT00000089006 3 2 2 80 14 79960054 79960634 CTGGAGAAGAAATTGTCTTCAGAG 60 79959997 79960016 TCCATTACACGTGGTGACTC 60 NA Rattus norvegicus 81 Gzmk ENSRNOG00000010661 ENSRNOT00000014319 2 1 1 88 2 45069371 45070285 ATTCCTGCAAGGGTGACTC 60 45069301 45069321 GGAGATGCCACATTTATAGCC 59 NA Rattus norvegicus 81 Sept9 ENSRNOG00000002807 ENSRNOT00000003891 1 1 1 80 10 106333769 106341826 TTCAGACGAGAGTTTAGAATGG 58 106341866 106341885 TGTAGCTTCATTTCCGTCAG 58 NA Rattus norvegicus 81 Apoo ENSRNOG00000046918 ENSRNOT00000073955 3 1 1 80 X 63542290 63544451 ATGAAGATCGATGAGCTCTC 57 63544494 63544512 TTCAAGTTGAGTCCTTGGC 58 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 1 2 2 80 10 40563931 40565137 CATTGTCCAGAGGATCCCA 59 40565181 40565199 GCTGTGCCAAAGAACAGAG 60 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 1 2 2 80 9 64552623 64554744 GATTCCTCGTTCTAGTATAATGCC 59 64552566 64552590 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Olr1307 ENSRNOG00000048037 ENSRNOT00000060092 3 1 1 60 8 43304203 43304222 CACAGTGATGGCTTATGACC 59 43304162 43304183 AATTATTGAGTAGCGAAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lenep ENSRNOG00000049513 ENSRNOT00000074920 1 1 1 89 2 188727472 188727491 TGTATCAAGGAACTGCTGGA 59 188727315 188727420 GGAGTCTTAGGGCTGAGTG 59 NA InUTR Rattus norvegicus 81 Cfap44 ENSRNOG00000028077 ENSRNOT00000059680 1 1 1 80 11 61222065 61222697 GATGGCAGTGTTAGGATATGG 58 61222005 61222025 CTCTATCTCTAACAACCCGCT 59 NA Rattus norvegicus 81 Cfap44 ENSRNOG00000028077 ENSRNOT00000059680 2 1 1 80 11 61225741 61226875 CCACATCAAGTTCTGGGAG 58 61225679 61225697 GATGTCTTTCCAAATCGCC 57 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 1 1 1 93 17 47687952 47687970 TTCAGGATGCATCGGAGAG 59 47688025 47695300 TCTTCAGATCCTGCTTCAGAC 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503,ENSRNOT00000058163 1 2 4 80 5 115217819 115221878 ATCCCTTCAGCAGTTTGTG 58 115217757 115217776 CCAGTTACAACCACTGAAGG 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 2 2 2 80 8 112854999 112857439 ATCATGTATTCTGCACACGA 57 112854938 112854956 GTAGGGAGGTAGAAGTCCA 57 NA Rattus norvegicus 81 Cml5 ENSRNOG00000015768 ENSRNOT00000021120 1 1 1 96 4 117531186 117531204 ACTTTGTCCCTGACACCAG 60 117507549 117531128 CACTTTCCTTAAGACCTTGGG 59 NA InUTR Rattus norvegicus 81 RGD1560207 ENSRNOG00000030048 ENSRNOT00000045901 1 1 1 80 X 46903095 46903116 CCACTTACAGTACACAATTTGG 58 46901521 46903055 CAACAATTTGAACTGTGGCT 58 NA Rattus norvegicus 81 Gpatch4 ENSRNOG00000018969 ENSRNOT00000056923 2 1 1 80 2 187420054 187422127 CAGAAGTTTGTGAAGACAGCC 60 187422169 187422187 GTCAACATCACTGCAGCTC 59 NA Rattus norvegicus 81 Slc38a2 ENSRNOG00000006305 ENSRNOT00000039002 3 1 1 80 7 138096372 138096390 ACATAAGGCATACGGTCTG 57 138096190 138096328 TAGCTTGACATAGCTCCGA 58 NA Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 1 2 2 83 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039663 195039682 CCTACTATGGACACCTTGCA 59 NA Rattus norvegicus 81 Stk31 ENSRNOG00000057554 ENSRNOT00000086307 1 1 1 80 4 79114491 79115474 CTGTTCTCTTAAAGGGCTATTCTG 59 79115511 79115531 AAGCTCTATGATAGGAGGCTG 59 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583,ENSRNOT00000041165 3 2 2 80 20 14579800 14579823 GATAACTTGGTTCGGATAAAGACC 60 14579860 14584826 CTTTAAGAAGCCAACTCTGCC 60 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000092223 1 1 3 87 6 29065173 29069743 ATGTGTTGGCTACTGTGGA 59 29069794 29069812 ATAGATCTGAGGGTAGCGC 59 NA Rattus norvegicus 81 Spg20 ENSRNOG00000014155 ENSRNOT00000057978 2 1 1 80 2 144536239 144538599 ACAACATTCTGTCAGGTGC 58 144538641 144538661 CTTTCTGAATTGCTTTGCCAG 59 NA Rattus norvegicus 81 LOC100910274 ENSRNOG00000048155 ENSRNOT00000050785 3 1 1 60 3 79187129 79187149 CTTTGTGCTATTTCTGCTCCT 59 79187170 79187189 GACCACCATGAGAAGATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 1 2 2 80 9 11180002 11180020 ACATGAATGATGGGAGGGT 58 11174730 11179961 ACCCAGATCCATATACTGTGAG 59 NA Rattus norvegicus 81 Lrp2 ENSRNOG00000056184 ENSRNOT00000082624 1 1 1 80 3 55754131 55754149 CCCGACGACAGATAATCAG 58 55751259 55754089 CACTCAGGAACATATACCCAG 58 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102,ENSRNOT00000084702 2 2 2 80 17 48349406 48358082 CCTTCCCAGAATGAAGTCCT 59 48349345 48349365 CACATCAGGTTTGAAAGGGTC 60 NA Rattus norvegicus 81 Gmds ENSRNOG00000017605 ENSRNOT00000023691 3 1 1 80 17 33843970 33843989 TAGGCAGATGTAAGGAGACC 58 33844030 33937476 GTAGAAAGTCCACTTCAGTCG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076190 2 1 5 60 X 64248968 64248987 TCATCCTGTTTCTCCATCCA 59 64248927 64248945 AGTGCCTTCACAAATTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emid1 ENSRNOG00000033575 ENSRNOT00000057361 1 1 1 85 14 85393155 85393173 GTCATGTGCAGAATGGCAC 60 85392727 85393106 GGTTCTGTAGCTGTTCCCA 59 NA Rattus norvegicus 81 Sgca ENSRNOG00000003998 ENSRNOT00000005381 1 1 1 80 10 82780241 82780259 CCTATAACCCTGGCTTCCT 58 82780007 82780197 GATTGTAGGCTGTGACCTC 58 NA Rattus norvegicus 81 Trim10 ENSRNOG00000000782 ENSRNOT00000001016 2 1 1 81 20 2189450 2190863 CCCTACAGGGAACAAATACAG 58 2189389 2189410 TTTCTCTTGATTGGGTTTCCTG 59 NA Rattus norvegicus 81 Nlrc4 ENSRNOG00000005810 ENSRNOT00000007655 2 1 1 86 6 22184310 22186911 CTCTACAGGGACTGATCGG 59 22186961 22186979 GACTGATGTACGCATCCCA 60 NA Rattus norvegicus 81 LOC691519 ENSRNOG00000036743 ENSRNOT00000030732 1 1 1 101 1 190466242 190478002 CAAATAAGGATGGCTTCACAC 58 190478064 190478083 CAGCTGCATGTATACTAGCA 58 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 3 2 2 80 15 56764460 56764480 TTTGCTATCTACCTACCACCC 59 56764519 56767192 TTCTGTGCAAGTTAAACCAGAC 60 NA Rattus norvegicus 81 Coq3 ENSRNOG00000009974 ENSRNOT00000013384 1 1 1 80 5 36054603 36056327 ATCTTGGAACCAAATGGTCTG 59 36056369 36056387 AGTCCAATGCCAGTAACCT 59 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833,ENSRNOT00000055127 1 2 2 80 3 163802794 163804445 TCTAGAAGGCATCTACGGG 58 163802732 163802750 AACTGCTTCAGGATCTCAC 57 NA Rattus norvegicus 81 Fat2 ENSRNOG00000012575 ENSRNOT00000058665 1 1 1 80 10 40611429 40613707 TGCTATATCACAGAGGGAGAC 59 40611369 40611389 CTTCCTTGAGGAGATTCTCCA 59 NA Rattus norvegicus 81 Slc16a2 ENSRNOG00000002832 ENSRNOT00000040637 2 1 1 81 X 74585290 74585308 CTTGGACGTCTCGTCTCAG 60 74580698 74585245 GCAGGAATGAGAGGACCTG 60 NA Rattus norvegicus 81 AABR07044581.1 ENSRNOG00000030677 ENSRNOT00000046763 3 1 1 81 20 11498050 11498070 GATGGCTTCAGGATTTCTGTC 59 11497972 11498009 CATTGATGAAGAGGTCCATGG 59 NA Rattus norvegicus 81 Lemd2 ENSRNOG00000025864 ENSRNOT00000035819 2 1 1 80 20 6550706 6551491 CCAGGAGTACATAGCTAACG 57 6550645 6550663 TTGTTGCTGCTCAGTATCC 58 NA Rattus norvegicus 81 Ints3 ENSRNOG00000015153 ENSRNOT00000020575 2 1 1 80 2 189771025 189771938 TTCCATCTACACAGAGTTTCCA 59 189770966 189770985 GCAGAGTCAATAACAGCCAC 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 1 2 2 60 16 19636635 19637533 AGAAATGGAGTTGTGGAAAGAC 59 19636596 19636616 AGATTGCTTTACACTCACAGC 59 NA DesignNoJunction Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 1 2 2 80 11 61279412 61279431 CGCTGGAATAAATCAAGACC 57 61278300 61279372 TCTACTTCATTAAGAGCCTGAG 57 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 3 2 2 80 11 61279409 61279430 GCTGGAATAAATCAAGACCCTG 60 61278299 61279372 GTCTACTTCATTAAGAGCCTGAG 59 NA Rattus norvegicus 81 Rnf185 ENSRNOG00000019325 ENSRNOT00000026134 2 1 1 81 14 83663867 83663887 CGAATGCAACATATGTCTGGA 59 83660748 83663824 ATGTAAACACGGCCAACAG 59 NA Rattus norvegicus 81 Ascl1 ENSRNOG00000004294 ENSRNOT00000005674 3 1 1 158 7 28038836 28039194 GACTTTGGAAGCAGGATGG 59 28038696 28038715 TGAATCTAAGTCCTGGTGCC 60 NA InUTR Rattus norvegicus 81 AABR07029742.2 ENSRNOG00000046598 ENSRNOT00000072548 3 1 1 61 10 48995545 48995565 GACAAACCCGATATGGTTGAG 59 48995585 48995606 GTTTCTGTCTTCTTCAACTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apeg3 ENSRNOG00000048353 ENSRNOT00000075745 3 1 1 60 1 70234758 70234777 ACTATCAAACGCACGATGAG 59 70234717 70234738 TTGAGGTGTTCTTTAAGGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 1 2 2 83 16 19663400 19667055 AGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 LOC679766 ENSRNOG00000033640 ENSRNOT00000049313 2 1 1 60 14 74095098 74095118 CAGTTGTGAACCCAGAAACTC 60 74095058 74095078 GAGTCCTCTTCATCTTCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr567 ENSRNOG00000060426 ENSRNOT00000083330 2 1 1 93 3 75576157 75576519 TCGATATCGTAAATTGCTCCTC 58 75576085 75576103 AGGAACGTGGTAAAGAGGG 59 NA Rattus norvegicus 81 Tmem184c ENSRNOG00000012860 ENSRNOT00000017226 1 1 1 80 19 34049487 34054083 ATTTGTCACAACTGTTTGCC 58 34054126 34054144 CAGGTTGTATAGGGCTGAG 57 NA Rattus norvegicus 81 Tmem184c ENSRNOG00000012860 ENSRNOT00000017226 2 1 1 80 19 34049488 34054084 TTTGTCACAACTGTTTGCCA 59 34054126 34054145 ACAGGTTGTATAGGGCTGAG 59 NA Rattus norvegicus 81 Padi3 ENSRNOG00000006950 ENSRNOT00000009230 1 1 1 80 5 159312730 159313581 TTGCACAGAGCTGTATTGAC 59 159312669 159312687 GGATGTCAATGATGTCGCT 58 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 2 1 1 80 4 182648978 182649000 GGAATCCATTAAGTATGGTCCAG 59 182636371 182648940 TTAAATCTTTCCTGCTCAGCC 59 NA Rattus norvegicus 81 Sfxn3 ENSRNOG00000015442 ENSRNOT00000021171 2 1 1 80 1 264799885 264800058 CTCTCACCAAGCACCTACC 60 264800102 264800120 GGATGTTGATGCAGTTGGC 60 NA Rattus norvegicus 81 AC117091.1 ENSRNOG00000032352 ENSRNOT00000041415 2 1 1 121 13 92197696 92197715 TAATGTTTGCTGTCCTTGCC 59 92197800 92197818 TCAGTGACCAGAGATGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Hgd ENSRNOG00000002701 ENSRNOT00000003645 1 1 1 80 11 66027050 66027071 CATTTCTGGATTTGGGAATGAG 58 66026123 66027012 TGAGGATTATTCTGTCCTTTCG 58 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 3 2 2 80 15 46116198 46116218 GATCACTCTGTCATCATGTGG 59 46116258 46121904 CTGGACTTTGTCATTGTGTCC 60 NA Rattus norvegicus 81 Cdh7 ENSRNOG00000032490 ENSRNOT00000041413 1 1 1 80 13 31203811 31203832 CTACTGCCAAATCATTGGATCG 60 31203873 31204709 GGGATGGATTCTGGCTCTC 60 NA Rattus norvegicus 81 Tnpo2 ENSRNOG00000003970 ENSRNOT00000005571 2 1 1 80 19 26155044 26155141 CAAATCAGAAGATGAACCAACC 58 26155182 26155200 GGGAAGCTCTGGTAATGTG 58 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910,ENSRNOT00000090663 3 2 2 80 17 46575242 46615688 ATGCATACATCCGGATTGTG 59 46575181 46575199 GTTCTATACTGCTGCGTCC 58 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 1 2 2 80 5 76678461 76679556 CCAGATAGCAATGAACCACC 59 76678400 76678419 ACAGCTTGATGTTTGGACAG 59 NA Rattus norvegicus 81 Sowahb ENSRNOG00000002202 ENSRNOT00000002995 3 1 1 60 14 16492604 16492622 TGACGAGTCCTCAGAATCC 59 16492645 16492664 ACGAATGCTTCGAAAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm70a ENSRNOG00000001640 ENSRNOT00000002238 2 1 1 80 11 45488094 45489931 AGCTAACGTGAAGCTTCGA 60 45488032 45488050 GTAGACAGCATAGGCTGCT 59 NA Rattus norvegicus 81 Zbtb6 ENSRNOG00000009340 ENSRNOT00000012364 1 1 1 83 3 21683057 21684072 TTTGCGAGTCGATTGTCAC 59 21682992 21683011 TCTGTAGGACCACATCTCCT 59 NA InUTR Rattus norvegicus 81 Olr361 ENSRNOG00000053372 ENSRNOT00000088190 1 1 1 60 1 230160404 230160422 ATTCTGCTGGGACTCACTG 59 230160444 230160464 GGAGAAAGATGATGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ushbp1 ENSRNOG00000023485 ENSRNOT00000040393 2 1 1 80 16 19786272 19786611 CTCTACAATATAGCAAGGACTGTG 59 19786215 19786233 CAACTCCAGCTCCTAGACC 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290,ENSRNOT00000016000 1 2 2 80 1 247110379 247110398 AGAGTGACTTAGACGTGTCC 59 247110441 247114813 TCCCGTGGCTATACATCTG 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290,ENSRNOT00000016000 2 2 2 80 1 247110380 247110399 GAGTGACTTAGACGTGTCCC 60 247110441 247114814 ATCCCGTGGCTATACATCTG 59 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000029664 3 1 2 82 X 105575453 105575471 AGAAAGATTGCTGGGTGTG 58 105575516 105575826 GGTTTCAGAGGTAAACCTCC 58 NA InUTR Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 2 2 5 80 15 10296381 10296399 GGCATACGATTTAGCTGGT 58 10293156 10296338 CTGCGAAATCCATTTACAGG 57 NA Rattus norvegicus 81 Cdk14 ENSRNOG00000007151 ENSRNOT00000009417 3 1 1 80 4 26277531 26304352 TTTAAGCCAGAACGATTTACCG 59 26336095 26336115 GGCGTGATTTACATAGCTGAG 59 NA Rattus norvegicus 81 LOC690271 ENSRNOG00000003080 ENSRNOT00000004114 3 1 1 80 13 99981456 99982197 GAGTCGCTTCAGTCATTTACC 59 99981396 99981417 AGGACTTCCTCAAATTTCATCC 59 NA Rattus norvegicus 81 Myo3b ENSRNOG00000030022 ENSRNOT00000037188 1 1 1 80 3 56368108 56368126 TCAACTTACAAGCACACGG 58 56368170 56387421 TCACAAGCAATGACCTCTG 58 NA Rattus norvegicus 81 Tecr ENSRNOG00000021808 ENSRNOT00000037608 2 1 1 87 19 24706508 24706526 AACTGCACCTACTACTGGG 59 24706351 24706458 GCTGAACTCCATAGGTAGGG 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040,ENSRNOT00000021703 3 2 2 80 17 53502713 53502732 ATGTTTGCAGATACTCGGCT 60 53502772 53528594 GTCCACAAAGAAAGACTTTCCC 60 NA Rattus norvegicus 81 Pcdh11x ENSRNOG00000030330 ENSRNOT00000045001 2 1 1 135 X 92596676 92655603 AAACAGTAGTATATCGTGGGCT 59 92655699 92655717 TAATTCTTCTCCTGGGCGC 60 NA InUTR Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000083788 1 1 2 101 1 88361689 88361707 TTGCTTGTCTGAAACCCAG 58 88353113 88361624 CTGGACTCCAGATCTGAGC 59 NA InUTR Rattus norvegicus 81 Azgp1 ENSRNOG00000001333 ENSRNOT00000001801 1 1 1 80 12 19200222 19202018 CTGGACCGAACAGATCCTC 60 19202059 19202080 GGCCAGACATCTGAATATTCTG 59 NA Rattus norvegicus 81 Olr765 ENSRNOG00000046942 ENSRNOT00000040298 3 1 1 60 3 102723945 102723963 AGGGTACTCAAACTTGCCT 59 102723984 102724005 TGTTGGCAATAACCATGATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk15 ENSRNOG00000010816 ENSRNOT00000014411 2 1 1 85 3 160232242 160232260 TTTCTACTTCGCCATCACG 58 160236143 160236161 ACATGCAGAACACTTTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Chac1 ENSRNOG00000014387 ENSRNOT00000019392 2 1 1 80 3 111161536 111162316 GAAGATCATGAGGGCTGCA 60 111162359 111162378 GTTCAGGTACTTCAGTGCCT 60 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 2 2 2 80 5 22393167 22469217 AATTGGGATCAGAGTAGGAACTC 60 22469254 22469275 AGGATCTTCGATAAGGACTTCC 59 NA Rattus norvegicus 81 Satl1 ENSRNOG00000022476 ENSRNOT00000037149 1 1 1 80 X 83773613 83774501 TCACTGAAGATTATCAAGGTCTAGG 60 83772805 83772824 TACATCCGGTGTTTATGGCT 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157,ENSRNOT00000091532 2 2 2 80 9 14569388 14569407 TTAAGAGGAGACAAGCGAGG 59 14569447 14569938 GAGACTCATGGAGGTATTTCCT 59 NA Rattus norvegicus 81 Nufip1 ENSRNOG00000001033 ENSRNOT00000001366 1 1 1 80 15 58187320 58187339 ATTTGAAGCCTGAAATTCCG 57 58187381 58194217 CCTTATCAGACTCAGAGTCG 57 NA Rattus norvegicus 81 Fem1c ENSRNOG00000003578 ENSRNOT00000004784 2 1 1 80 18 40517206 40517226 AAGGACACAAAGAGATTGCTC 59 40498873 40517166 GTGCAGTATTGCCTTTAACAC 58 NA Rattus norvegicus 81 RGD1561151 ENSRNOG00000034183 ENSRNOT00000042552 3 1 1 95 X 96667876 96668815 AAAGTGAAGACACAAGCAGG 59 96668873 96668891 AACAAGGCCTCTTAAGCAG 58 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266,ENSRNOT00000000053 2 2 2 88 13 89975511 89983958 CATCAGGGCCAAGATTGTG 59 89984009 89984028 GTTTGTATGTTGGAAGGCCG 60 NA Rattus norvegicus 81 Gng13 ENSRNOG00000039350 ENSRNOT00000030273 2 1 1 89 10 15090461 15090480 ATGAAGAAGGAGGTGGAGAG 59 15090532 15090674 AATCCACTTGAGGAGCTCG 60 NA Rattus norvegicus 81 Fxyd4 ENSRNOG00000014578 ENSRNOT00000019649 2 1 1 80 4 149986619 149986637 TGGAGGGAATAACCTGTGC 59 149985626 149985767 TGCCTTTATCAACTGGACCA 59 NA Rattus norvegicus 81 Cysrt1 ENSRNOG00000010600 ENSRNOT00000014080 1 1 1 62 3 2459305 2459323 AAGAAGACAGACTGCTGCT 59 2458931 2458949 TTGACAACCATCTCATGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 3 2 2 80 2 188667415 188667553 AGCTTGTGACTGTTACTTCCT 59 188667355 188667374 CCGAGAAGTCAGGAGAACAG 60 NA Rattus norvegicus 81 Icoslg ENSRNOG00000023109 ENSRNOT00000038547 3 1 1 80 20 11335667 11335687 ATGTGGATGTTATCTGCTGTG 59 11334154 11335625 CAGTGAAACTATCTGCCCG 58 NA Rattus norvegicus 81 Olr1163 ENSRNOG00000030569 ENSRNOT00000045215 3 1 1 60 8 20172684 20172702 ATGAACCCTCGAATCTGTG 57 20172642 20172662 AGACCCAGAACATAATGATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf14 ENSRNOG00000047730 ENSRNOT00000074247 2 1 1 80 9 9762689 9763018 GCTGATACAAGATCAACGATCTC 60 9764768 9764786 CCAATGCCTATCAAGCTGG 59 NA Rattus norvegicus 81 Shmt2 ENSRNOG00000008106 ENSRNOT00000011082 3 1 1 81 7 70828341 70828360 CTGAGATATGGGAGCTTCTG 57 70827783 70828297 CTGCAGAAGTTCTCTGAGG 58 NA Rattus norvegicus 81 Ccdc167 ENSRNOG00000000531 ENSRNOT00000000639 3 1 1 80 20 8370008 8370764 GCCTCGAAATATGAGAAGGAG 58 8369948 8369966 TATGAAGATGGCCACCGAG 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 2 3 3 132 4 150519571 150520280 TAGGAGCTGTGGTGATAAGC 59 150518941 150518959 GTCATAGCTTTCATGCCGG 59 NA Rattus norvegicus 81 Ndfip1 ENSRNOG00000013562 ENSRNOT00000018499 2 1 1 91 18 31605825 31605845 ATAATGTGGCTACAACACTGC 59 31605895 31609909 ATCTTCATCTCTTCCAGGAACC 60 NA Rattus norvegicus 81 Rn60_5_0815.7 ENSRNOG00000051118 ENSRNOT00000076023 2 1 1 80 5 77489989 77490354 GCTCTACGGTAGAACAAAGG 58 77489928 77489946 CTAGTGATTACATGCGCCT 57 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 2 1 2 105 2 235312002 235321203 AGTACAAGTGTAGCGACGG 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Serp2 ENSRNOG00000038228 ENSRNOT00000058204 2 1 1 80 15 58694626 58705101 TGTGGCTCAGACTTAAATCC 58 58694565 58694583 AGAATGTTCTGGCAGTCTC 57 NA Rattus norvegicus 81 Olr244 ENSRNOG00000045879 ENSRNOT00000055175 2 1 1 60 1 172214929 172214948 TTATGTGATGCCCAAGTCCA 59 172214888 172214906 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs3 ENSRNOG00000009155 ENSRNOT00000012425 2 1 1 80 3 79724079 79724098 GACAGATTATGGCTTCGAGG 58 79721918 79724037 TCATCGTCATAACGTAGCTC 57 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000007807 3 1 2 85 4 82126451 82126470 TTCAGAGACGTCTTCTCCAG 59 82125899 82126405 CATACTCTCCAACTTTCCCTG 58 NA Rattus norvegicus 81 R3hcc1 ENSRNOG00000016777 ENSRNOT00000022706 3 1 1 80 15 51375361 51375380 TCTCTTGAGCAGCTTCTCTG 60 51374557 51375320 GAATTGGGTAACCTGATGTCC 59 NA Rattus norvegicus 81 LOC100911002 ENSRNOG00000050177 ENSRNOT00000071895 3 1 1 80 1 146985435 146985455 TAAATGCCTCTTTCAGAAGCC 59 146985496 146986241 ACTTAAGCTCCTCCCTTGAG 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 3 3 3 80 2 236649901 236651304 CCCTACATCAAGATGATTCTGGA 60 236651343 236651362 GTTCCAGTAAATCCGGTCCA 60 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 1 1 1 60 11 65960425 65960446 GTATCTGCTTCAGTACAACGAC 59 65960467 65965177 AATCAAGGCAGGATCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Tead3 ENSRNOG00000000506 ENSRNOT00000000607 2 1 1 80 20 7915076 7916628 AAGGCTATGAACCTGGACC 59 7915014 7915032 AGAGACGATTTGGGCAGAC 60 NA Rattus norvegicus 81 Slc27a1 ENSRNOG00000018170 ENSRNOT00000024659 1 1 1 80 16 20014408 20014428 GAAGGTTCTTGCATCCTATGC 60 20014470 20014980 TGGATCTTGAAGGTGCCTG 60 NA Rattus norvegicus 81 Slc27a1 ENSRNOG00000018170 ENSRNOT00000024659 3 1 1 86 16 20013692 20013710 TATGTTAGTGACAGCGCCA 59 20013760 20013848 TAGCACGTCACCTGAAAGG 60 NA Rattus norvegicus 81 Mas1 ENSRNOG00000014971 ENSRNOT00000020100 3 1 1 82 1 48094632 48103154 GTTGGTTCCAGGAGATGCT 60 48103196 48103218 GGTATCATCAGTCAGTAACATGG 59 NA InUTR Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 1 2 2 80 2 188452443 188452462 AAGGAGATGATCAAAGCAGG 58 188452503 188452664 GATGGATTCTGCATGGTACTC 59 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476,ENSRNOT00000005446 3 2 2 80 18 41373355 41373375 GGCAGTTACAGATGTGATTCG 60 41371103 41373315 CCAGGGATGCTGTTATAAGGT 60 NA Rattus norvegicus 81 Il10 ENSRNOG00000004647 ENSRNOT00000006246 3 1 1 87 13 47740985 47741003 ATGGCCCAGAAATCAAGGA 59 47741054 47742069 AGAAATCGATGACAGCGTC 58 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755,ENSRNOT00000037028 3 2 2 80 8 66890608 66890627 TCAATAGTACAACCGTGCAG 58 66886523 66890568 AGTACTGAGTCTCCTTGTAGTC 59 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 1 2 2 80 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556152 22557557 GAAGTCTTCAATATCCTTGGGC 59 NA Rattus norvegicus 81 AABR07028027.1 ENSRNOG00000021292 ENSRNOT00000033844 2 1 1 80 17 53396976 53396998 CTAAACCAGACCCTTCTGGAG 60 53397039 53397058 TCCAAGAAAGCCCATAACCT 59 NA Rattus norvegicus 81 Rab11a ENSRNOG00000011302 ENSRNOT00000015598 1 1 1 80 8 70204455 70204474 GCTTGTGGGCAATAAGAGTG 60 70203393 70204414 CCATTCTTCTCTGCAAATGCT 59 NA Rattus norvegicus 81 Nr2f6 ENSRNOG00000016892 ENSRNOT00000022898 1 1 1 69 16 19776952 19776970 AGAGTTTCTTCAAGCGCAG 59 19774404 19774422 ATCTGACAGTCACGGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1305537 ENSRNOG00000045696 ENSRNOT00000073995 3 1 1 90 10 1470208 1470232 CATTCCTCCTATAAACGGAGTG 59 1470284 1470302 TTGGGTGTTTGTCTCTGGA 59 NA Rattus norvegicus 81 Fdxr ENSRNOG00000058497 ENSRNOT00000085636 2 1 1 84 10 103822206 103822227 AGACATCTATGAGAAGCAGCTC 60 103821951 103822167 GATGACATTCTTTACTTCAGGATGG 60 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000048168 ENSRNOT00000063905 2 1 1 126 12 52638249 52638613 CCTGACAGAGAAGATCAGGG 59 52638787 52638805 GGTGAATCTGTCGAACACG 59 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 2 1 1 89 X 93065315 93065459 AAACCTATGGCACTGTCAG 58 93065244 93065262 AGAGTACTGAGTGCGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Parva ENSRNOG00000015713 ENSRNOT00000021671 1 1 1 80 1 177393304 177393809 CAATGTGGTGAAGAAGACCC 59 177393852 177393870 GTCTCCAGTTCTGTGACCT 59 NA Rattus norvegicus 81 Olr198 ENSRNOG00000049227 ENSRNOT00000041317 2 1 1 60 1 170109437 170109460 CCTTATCTTGATCACCATCTACTG 59 170109477 170109497 AAGAAACTGGTACATTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 2 2 2 80 11 67659942 67662001 ACAGATCCAGACTGTGATAGAC 59 67659883 67659901 TTTCTCGTCCGGAACTCTG 60 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454 3 1 3 82 14 47203107 47203268 CCATGGGAAATGCACTTAGTC 59 47203045 47203063 GCTTTCTGGTCACTTTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Cyp3a18 ENSRNOG00000000969 ENSRNOT00000001285 2 1 1 80 12 10680535 10683767 CTTGTGAGAAGACACAGATCC 59 10683808 10683827 CAAGCTTTAGGATGATGGGT 58 NA Rattus norvegicus 81 Ostc ENSRNOG00000023322 ENSRNOT00000037393 3 1 1 80 2 235823820 235826593 TTCTTGGCTTACAGAGTAAACG 59 235823761 235823779 ACCTAAGCCTCCCATTGTG 59 NA Rattus norvegicus 81 Olr1319 ENSRNOG00000053365 ENSRNOT00000083262 2 1 1 60 8 43607368 43607387 TGAGAGCAGATTCAAAGCCT 60 43607410 43607428 GAAGACAGCCACAGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5g ENSRNOG00000026578 ENSRNOT00000031244 1 1 1 80 6 26628267 26628864 AAAGCCTACAGGAAACTGG 57 26628205 26628224 GTCTTTGAAGAATTCTGCCG 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 1 2 2 100 1 400975 400993 CCACACCTATCACGAACTC 58 401057 401927 TAAGCAAAGAAGCCACCTG 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 2 2 2 120 1 400955 400973 AATGCTGTGTATGCTGTGG 59 401057 401927 TAAGCAAAGAAGCCACCTG 58 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 1 2 2 80 14 107792110 107794195 GATGATTCTTCTAGTTCTGCATCG 60 107794234 107794252 TAGGTCAGGCTCTGAAAGC 59 NA Rattus norvegicus 81 Smarcc2 ENSRNOG00000031135 ENSRNOT00000028244 2 1 1 80 7 2881706 2881726 AACCATTTCTGAGGACAAGAG 58 2881768 2882007 CGTACCCATTCCTCTTCCT 59 NA Rattus norvegicus 81 Babam1 ENSRNOG00000017071 ENSRNOT00000022938 2 1 1 80 16 19795051 19796407 CTGCTCCACATTCAATTTGG 58 19796952 19796971 GTTTGCACATTCTCTGTGAC 58 NA Rattus norvegicus 81 Babam1 ENSRNOG00000017071 ENSRNOT00000022938 3 1 1 80 16 19795052 19796408 TGCTCCACATTCAATTTGGA 58 19796954 19796972 GGTTTGCACATTCTCTGTG 57 NA Rattus norvegicus 81 Lipm ENSRNOG00000019301 ENSRNOT00000026219 3 1 1 80 1 252415472 252418226 AATTGAAGAAGGAAGGATCCAG 58 252418267 252418285 GGTTGGAAATCCAGTTGCT 58 NA Rattus norvegicus 81 LOC257643 ENSRNOG00000004858 ENSRNOT00000006555 2 1 1 67 3 143112415 143112433 ATTGCCCATTGCTACAAGG 59 143115909 143115927 AGGTCGTGCATCTACTTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100125384 ENSRNOG00000045720 ENSRNOT00000074027 2 1 1 60 1 106405980 106405999 CACAGAAATATTGCCAACCC 58 106406021 106406040 GGTAGTCCAGCATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp5 ENSRNOG00000051970 ENSRNOT00000084911 3 1 1 120 7 141249404 141249422 CTCCGAGCTGTCTTCTACG 60 141249506 141250557 TGTTGTTCAGCGCATTGAC 60 NA Rattus norvegicus 81 Anapc15 ENSRNOG00000019936 ENSRNOT00000027028 1 1 1 80 1 166983184 166983326 GGACTCAAACTCAGCTTAGG 58 166983366 166983387 ATTAAACCACAGTGTCTCAGTC 58 NA Rattus norvegicus 81 Anapc15 ENSRNOG00000019936 ENSRNOT00000027028 3 1 1 80 1 166983188 166983330 TCAAACTCAGCTTAGGAGCC 60 166983370 166983391 CCAGATTAAACCACAGTGTCTC 59 NA Rattus norvegicus 81 Olr1462 ENSRNOG00000022244 ENSRNOT00000035285 2 1 1 60 10 45922994 45923012 AGCAGGGCAAGTTTATCTC 58 45922952 45922970 ATGAAAGGGTTAAGGGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd19 ENSRNOG00000016760 ENSRNOT00000022497 3 1 1 80 19 37342603 37343141 CAGAGATGCAAAGGAAACCAC 60 37342543 37342561 TTAGCCTTGTTCCAGGGAG 59 NA Rattus norvegicus 81 AABR07029675.1 ENSRNOG00000030600 ENSRNOT00000048241 3 1 1 85 10 44632775 44632795 CATACAGTCCTGAGTGGCC 60 44632843 44632862 AATACAACAACCAACACCCG 59 NA Rattus norvegicus 81 Tmem98 ENSRNOG00000021316 ENSRNOT00000037072 2 1 1 80 10 68176434 68176455 CCATTCTGGAGAATGAAGACTG 59 68177695 68179520 TGTGACAAATCTTCAAGATGGC 60 NA Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 1 1 1 104 13 37491661 37491680 GAAGATATACAAAGCCGCCA 58 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 3 1 1 106 13 37491663 37491682 TGGAAGATATACAAAGCCGC 58 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Nufip2 ENSRNOG00000024964 ENSRNOT00000030501 1 1 1 185 10 65199981 65199999 TTTCTACAACCACAGCCAC 58 65195156 65199835 CCATTTATTTCACCATAGCCTG 58 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 2 2 2 81 1 101844000 101844018 CTCTACCTGGTTACCAACG 57 101843371 101843955 GCTGATAGAACACCTCACC 58 NA Rattus norvegicus 81 Tbr1 ENSRNOG00000005049 ENSRNOT00000065340 3 1 1 80 3 47679825 47680434 CAACAATGGGCAGATGGTG 60 47680478 47680496 CCGTCCTCATTCACTTCCA 59 NA Rattus norvegicus 81 Vom1r92 ENSRNOG00000057461 ENSRNOT00000087069 1 1 1 60 4 121761546 121761566 AAGGATGAAGTTCAAGGATGG 58 121761585 121761606 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox18 ENSRNOG00000016248 ENSRNOT00000021790 3 1 1 142 3 177178615 177178633 AATCCGGATCTCCACAACG 60 177178307 177178327 TACTTGTAGTTGGGATGGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Glt6d1 ENSRNOG00000027900 ENSRNOT00000034538 1 1 1 80 3 3260583 3264028 AGATCCACTTGAGGAACCA 58 3257018 3257037 TGATAACATCCAAGCGTCTC 58 NA Rattus norvegicus 81 Anks1b ENSRNOG00000024870 ENSRNOT00000059269 1 1 1 80 7 30714793 30727487 GAGCTGTCAAACAGAGAAGG 59 30727530 30727548 TCTAACAGAACTCGCACCA 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 3 2 2 80 1 166624273 166624446 CAAGGAGACTTGGAGAAGG 57 166624489 166624508 CTGAAGTTCAGGGATGTAGG 57 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438,ENSRNOT00000005731 2 2 2 80 6 36092353 36093530 GGAATACTGTTGTCAAGCAGG 59 36093572 36093590 AAGTTTCGTGTTGACTGGC 59 NA Rattus norvegicus 81 Snx2 ENSRNOG00000017832 ENSRNOT00000050631 2 1 1 80 18 48151956 48153491 ACAACCAAGACTTCTCTTTCC 58 48153532 48153551 ATGCAAACCAAGAAAGTCAC 57 NA Rattus norvegicus 81 Gabpb2 ENSRNOG00000021105 ENSRNOT00000028661 2 1 1 80 2 196374057 196374075 TGACAAGTCTGCCTTTGAC 58 196370505 196374014 TGATTCTGCATTGCTTCCTG 59 NA Rattus norvegicus 81 Rn60_2_0094.1 ENSRNOG00000051037 ENSRNOT00000076041 1 1 1 60 2 9496697 9496718 GTAGAAACCTCAACATTGACCT 58 9496739 9496757 GACACAATTTGACCTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clk4 ENSRNOG00000003714 ENSRNOT00000005048 2 1 1 80 10 36730826 36730844 TCAGCCTTGTGATGTTTGG 58 36730883 36732176 CTATCATGAGTCTGAAAGACTGTG 59 NA Rattus norvegicus 81 AABR07004678.1 ENSRNOG00000052842 ENSRNOT00000089920 2 1 1 60 1 149777878 149777896 CAATCGGCAAAGTGGTCTC 59 149777836 149777856 ATGAGAGGGTTGACTAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 2 2 2 80 7 30293413 30294239 TCAAACAGACTAAGGACTTGAC 58 30293354 30293372 TCTTAGGAGTGCTAACGGA 57 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 3 2 2 80 16 20408219 20408354 TGTCAGTGATGAGATCATGTG 58 20408395 20408414 CGCAGAAGCCTAGTAATGAG 58 NA Rattus norvegicus 81 LOC100912852 ENSRNOG00000047003 ENSRNOT00000071620 1 1 1 135 9 12420447 12420932 ACAGTTCCTACCGCATCAG 60 12421031 12421049 GTCTCCACAGAGGATGCTG 60 NA Rattus norvegicus 81 Nfkb2 ENSRNOG00000019311 ENSRNOT00000026235 1 1 1 80 1 266058872 266058890 ACATGGGTCTTCATGAGGG 59 266058933 266059031 CTTCTTTCACCTCTGTGCTG 59 NA Rattus norvegicus 81 Farp2 ENSRNOG00000018051 ENSRNOT00000024440 1 1 1 80 9 100707231 100707249 AGTTCAAGAACGTCCAGTC 57 100708083 100710118 CATTCTTAGGCTTTCGCAC 57 NA Rattus norvegicus 81 Rn60_X_0655.1 ENSRNOG00000051282 ENSRNOT00000076575 1 1 1 60 X 64528958 64528976 TGGATGTGGTGAAGGTCTG 59 64528916 64528936 GTTGTCAATTCACTGGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phb ENSRNOG00000046799 ENSRNOT00000075733 2 1 1 80 10 83480064 83480085 ACAGAAGCCAATCATCTTTGAC 59 83480124 83483452 ACATTCTGCAAGTCTTTGCTG 60 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 3 2 2 106 9 100929097 100929116 GAAATCGGCAAGCTTCTGAG 60 100927054 100929030 ATTAATGGCACTTGTTCCCAG 59 NA Rattus norvegicus 81 Prkcdbp ENSRNOG00000017914 ENSRNOT00000024119 1 1 1 85 1 170317713 170318273 GCTCTTCAAGGAGGAGACTG 60 170317647 170317665 CTAGCACCAACTGGTCCTC 60 NA Rattus norvegicus 81 Rn60_2_0457.1 ENSRNOG00000018068 ENSRNOT00000024327 3 1 1 84 2 26471258 26471276 AGAAGATCACGCATACCGG 60 26471386 26471405 TCATTCACCTCTTTCTGACG 58 NA DesignNoJunction Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 3 2 2 113 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863379 102873769 CTTCTTCTCATCCTGACGGT 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 1 1 1 95 3 2443901 2444225 GTTCTGGGAGGTAATCAGC 58 2443824 2443842 TAGTACACGTTGATGCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000092187,ENSRNOT00000020012,ENSRNOT00000089536 2 3 7 76 17 57082682 57082701 AGAAGAAGCAACTCGAAAGC 59 57087779 57087797 TCTTCTTCCTGCGACACTC 60 NA DesignNoJunction Rattus norvegicus 81 Rnf187 ENSRNOG00000049219 ENSRNOT00000073082 3 1 1 111 10 45274499 45275084 CATGCTTCTGCAGTGATGAC 60 45274407 45274426 GCCTAAGGGATGTAGGTAGG 59 NA InUTR Rattus norvegicus 81 Stxbp5l ENSRNOG00000002496 ENSRNOT00000041715 2 1 1 80 11 66495576 66495597 TAACAGAGCTGAATGATAGTCC 58 66495636 66538244 AGTGTCCATTTACATGGTCTG 58 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 2 2 2 80 1 214180366 214180580 ATCCCACTATAGAGGACTCC 57 214180305 214180324 CTGCTGTGTCTAAGATGTCC 58 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 3 2 2 80 1 214180365 214180581 GATCCCACTATAGAGGACTCCT 60 214180306 214180326 TGCTGTGTCTAAGATGTCCAG 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555,ENSRNOT00000065011 1 2 2 80 1 88713381 88713399 ATGAGCTGATCAAGGTGGA 58 88711331 88713337 GCAAAGTCACTCCTGTCTC 58 NA Rattus norvegicus 81 Cntln ENSRNOG00000043151 ENSRNOT00000008757 2 1 1 80 5 103261087 103261107 TCACTCCGTCAAGGTTATGAG 60 103261149 103292470 GAATCACTGCTGCCTTCAC 59 NA Rattus norvegicus 81 Plp1 ENSRNOG00000002419 ENSRNOT00000003283 1 1 1 80 X 107506760 107506778 CCAGTCTATTGCCTTCCCT 59 107506820 107507448 GGGAGAACACCATACATTCTG 59 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 1 1 1 80 2 194558563 194558584 AGTCAATGGTAGAGTCACATCC 60 194558624 194718250 GGATCAGAAAGCACTCTTGC 59 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 2 1 1 81 2 194558560 194558580 GGAAGTCAATGGTAGAGTCAC 58 194558623 194718248 ATCAGAAAGCACTCTTGCA 57 NA Rattus norvegicus 81 Ms4a6bl ENSRNOG00000050395 ENSRNOT00000074127 1 1 1 80 1 227246037 227248815 AAATCTTTGGTAGATGGCAGC 59 227248854 227248875 GACAGAGATGATAATGATGCCC 59 NA Rattus norvegicus 81 Olr247 ENSRNOG00000048525 ENSRNOT00000049260 2 1 1 60 1 172283438 172283458 ATGTACTTCTTTCTCAGCCAC 58 172283477 172283498 GTGTAACAGATGATGAGTAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gntl1 ENSRNOG00000049724 ENSRNOT00000071141 1 1 1 80 10 110807923 110814351 TTCAGTCCTTGAGATGACCA 58 110807862 110807880 GTGAAGGACTTCCAGTGAG 58 NA Rattus norvegicus 81 Ssbp4 ENSRNOG00000019698 ENSRNOT00000026713 2 1 1 80 16 20587465 20587684 CATCCATGAACATGGGTCC 58 20587816 20587835 GAGATGAGGAAGAGTACGGG 59 NA Rattus norvegicus 81 Pdcd5 ENSRNOG00000013250 ENSRNOT00000017708 3 1 1 93 1 91175050 91175069 CTTAGCACTTGTGAAGCCTG 59 91173992 91174994 TTCTGACACCTTCCCACTC 59 NA Rattus norvegicus 81 Adam17 ENSRNOG00000060694 ENSRNOT00000081110 3 1 1 80 6 43409923 43409942 ATCATGTACCTGAACAACGA 57 43408767 43409882 ACTATTCCTATCACTGCACTG 57 NA Rattus norvegicus 81 Pea15 ENSRNOG00000046996 ENSRNOT00000070812 1 1 1 80 13 90582038 90583240 GGACAAAGACAACCTCTCCT 59 90581977 90581996 TAGTCAACCACCATCGTGAG 60 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 1 2 2 80 1 185478309 185479014 GACCCAAGATCATCAAGTCC 58 185479056 185479075 GAACATTAAGGTTCCTCCGA 57 NA Rattus norvegicus 81 Skap1 ENSRNOG00000023881 ENSRNOT00000030159 1 1 1 83 10 84576427 84576446 ACGTTTACGAAGTCCTACCA 59 84586072 84593924 AATCGGCATAGTCCACTCG 60 NA Rattus norvegicus 81 LOC100362532 ENSRNOG00000050269 ENSRNOT00000075170 1 1 1 60 4 161309821 161309839 GAAAGCAGAAACACCTGGA 58 161309779 161309797 CCTTGTCCCAAAGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000034124 2 1 2 80 12 2603700 2604159 ACACATACAACAGGAGCAG 58 2603638 2603658 GATGATGCATACATGGATGTG 57 NA Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000079918 1 1 2 80 12 2590184 2590202 AGCACAGAACAAGGGACTC 60 2590039 2590141 TCCTCCTTACTCTTGCACTC 59 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 2 2 2 113 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057302 17057320 TTATCCCAAGGGAACTCGG 59 NA Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 3 1 1 80 10 62304519 62305234 ACCACCTAGTGGTAGTGAG 58 62305273 62305296 GAAGTAGAGATACCATAGAGAAGC 58 NA Rattus norvegicus 81 Rala ENSRNOG00000013454 ENSRNOT00000018190 1 1 1 93 17 49717383 49717402 ACAACTACTTCCGAAGTGGG 60 49717458 49721428 ATCTGTTCCCTGAAGTCCG 59 NA Rattus norvegicus 81 Srp14 ENSRNOG00000007512 ENSRNOT00000009866 2 1 1 83 3 110246450 110246992 GTGAATAAGTTTCAGATGGCCT 59 110246388 110246408 ACTCTTGTTCTTCTTGTCCCT 59 NA Rattus norvegicus 81 Gcsh ENSRNOG00000011535 ENSRNOT00000015967 3 1 1 85 19 49529084 49529102 CACAGAGAAGCACGAATGG 59 49527358 49529035 CATCTCCCAAAGCTTCCTG 58 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491,ENSRNOT00000000756 3 2 2 80 20 19381961 19383287 GCAGTTTATGATGCCACGA 59 19381899 19381918 TTAGTGAGCTGCGTAATGGT 60 NA Rattus norvegicus 81 Dhx36 ENSRNOG00000014599 ENSRNOT00000019824 3 1 1 80 2 152798182 152798203 CTGAGTAGGTTAATGGATCCAC 58 152796827 152798141 ATCCAAAGCACTCAGTTCC 58 NA Rattus norvegicus 81 Lyzl6 ENSRNOG00000003501 ENSRNOT00000004650 1 1 1 80 10 91696178 91697242 GACTGTGAAGAACTACTGAATCC 59 91696120 91696138 CATCCCTCCAGATCCAGAC 59 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 1 2 2 80 19 49989892 49989911 CTGGTTCCAGCTCTACAGTC 60 49989953 49993124 ATGAGGATATGCACCATGCT 59 NA Rattus norvegicus 81 LOC500035 ENSRNOG00000031207 ENSRNOT00000050722 1 1 1 83 4 40161345 40161363 ATCACTGCTGATGTTGGCT 60 40161409 40165800 TGTATTGGCATGAGTACCCA 59 NA Rattus norvegicus 81 Tceal1 ENSRNOG00000002387 ENSRNOT00000044372 2 1 1 93 X 107370506 107370524 TTGGTCGAGAAGGAAAGCA 59 107371315 107371334 GCTCTGTGGTTGTTCTTCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Epha1 ENSRNOG00000017525 ENSRNOT00000024037 1 1 1 80 4 71749820 71751293 AACTTTGACCCTAGGGTGAC 59 71749759 71749777 CCACTCAGAGACACTTCGA 59 NA Rattus norvegicus 81 Rnf168 ENSRNOG00000043345 ENSRNOT00000002395 2 1 1 80 11 71736025 71736043 AGACGAAGTGAGATGGAGG 59 71732393 71735984 GTAGTTACTGTTGATGCTGGTG 59 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 3 2 2 89 10 105157113 105157131 TGCAAGGCTGTTCATTTCC 59 105157184 105158209 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Slc51a ENSRNOG00000001765 ENSRNOT00000002405 3 1 1 80 11 71545385 71545407 GCCTTCTTCAAGATAGTGATGAG 59 71545446 71545699 CTCAGAAATTTCTGCTGGGT 58 NA Rattus norvegicus 81 Mrm1 ENSRNOG00000027901 ENSRNOT00000030885 3 1 1 81 10 72138738 72138756 CTGCTCCTTACCATTCTGC 58 72138534 72138695 GAAGAATTCCTGTAGCCACAG 59 NA Rattus norvegicus 81 Fam183b ENSRNOG00000002873 ENSRNOT00000003841 2 1 1 80 10 44736734 44740327 CATCCCTTGATCAACCCAG 58 44736672 44736692 AGCTTTGTACAGAGTGATGTC 58 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 2 1 1 61 15 57505578 57568089 CTAAAGTATGTGTCTAGTAGACGG 58 57568109 57568127 TGGAAGCTACCTTGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mfi2 ENSRNOG00000001739 ENSRNOT00000002373 2 1 1 80 11 72140078 72140096 ATGCTGTCATGGTTCATCC 58 72138337 72140034 CGTCTCCAAATAGGTCCTG 57 NA Rattus norvegicus 81 Dhps ENSRNOG00000004219 ENSRNOT00000005656 3 1 1 81 19 26185442 26185460 GGGCTATACGTCCAACCTC 60 26185502 26186202 CAGTACATCCACCATATTGTGC 60 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 2 1 1 60 4 170104341 170104360 ATCCAAAGTTACGAGAAGCA 57 170104300 170104320 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718,ENSRNOT00000091144 1 2 2 80 5 99178278 99179097 GAAAGAATTCCTCAGGTGCC 59 99179139 99179158 TCCAAGTCTGACTGTGAGAG 59 NA Rattus norvegicus 81 Svs1 ENSRNOG00000008714 ENSRNOT00000011588 2 1 1 84 4 78643472 78643490 CAACCAGAACCATCACTGG 59 78643538 78643814 CACCAAGTCCTCATCTTCG 58 NA Rattus norvegicus 81 Adss ENSRNOG00000004481 ENSRNOT00000005961 2 1 1 80 13 95919333 95919353 GTTTACGGAGATCAAAGTCGG 59 95917931 95919292 AAGACTTCTTGGTTTGCTGG 59 NA Rattus norvegicus 81 Ercc4 ENSRNOG00000048121 ENSRNOT00000004563 2 1 1 82 10 2024436 2026135 ATTCGACAAGACAATCCGC 59 2024372 2024390 TCAAATCCTGCACCAAGGA 59 NA Rattus norvegicus 81 Olr121 ENSRNOG00000048603 ENSRNOT00000048499 1 1 1 60 1 168819413 168819433 CAATATGTCATCCCTCATGCC 59 168819373 168819391 TGCCACTTGCCAATTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.2 ENSRNOG00000046012 ENSRNOT00000074319 2 1 1 60 X 62959536 62959556 ATTGATTCCACAGATGAGGAG 58 62959577 62959596 AAACCACCTTCTCAAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cilp ENSRNOG00000029911 ENSRNOT00000044887 3 1 1 80 8 70771123 70771141 AGTACTTCTGTAAGGCGCA 59 70771185 70773102 CCTCATCGTGTGCAATGAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389,ENSRNOT00000086635 3 2 2 80 5 102434480 102528792 ATACATCCTTCAGGACGCT 58 102434418 102434437 TGAAGGGTGATGATTTCCTC 57 NA Rattus norvegicus 81 Gna13 ENSRNOG00000036745 ENSRNOT00000055062 1 1 1 80 10 97649902 97649920 GAGCCTTATGGGATGACAG 57 97649961 97676048 AATACTTTACAGACTCACCCAG 58 NA Rattus norvegicus 81 Ggct ENSRNOG00000034084 ENSRNOT00000043752 1 1 1 80 4 85188002 85189383 TCTGGATGAACAAGAAGGAG 57 85187941 85187959 ATGTCCTTCCCTTGTTGAG 57 NA Rattus norvegicus 81 Emc1 ENSRNOG00000018097 ENSRNOT00000068168 1 1 1 80 5 157821017 157822329 AAGTTTGACTGGAGACAGC 58 157822372 157822391 AACCAACTTCTTGGATCCAG 58 NA Rattus norvegicus 81 Ndufb6 ENSRNOG00000024539 ENSRNOT00000029712 2 1 1 81 5 56575207 56575226 ACGTCAAATATCATGTGGCT 58 56567306 56569036 TCCAGAATTGTATCACCTGGA 59 NA Rattus norvegicus 81 Sec11a ENSRNOG00000011029 ENSRNOT00000015218 3 1 1 80 1 142740015 142740035 GAGGCCTCTATAAACAAGGAC 58 142734267 142739974 CAATGTACGGAACAAACCCT 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 3 2 2 80 1 89468690 89468708 CCAAAGGTTACATGCCTCC 59 89467513 89467650 TGGTATTGTCGTAGTAGAAGGG 59 NA Rattus norvegicus 81 AABR07072593.1 ENSRNOG00000056718 ENSRNOT00000080986 3 1 1 119 18 48129647 48129665 TGCAGGACAAAGTCAAGGA 59 48129543 48129564 CTCTCATCCCAGCCTTCAC 60 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 1 2 2 82 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322884 214322903 AGTGTGGCTAGGAAGTACAG 59 NA Rattus norvegicus 81 Prpf39 ENSRNOG00000004521 ENSRNOT00000066702 1 1 1 80 6 86792528 86792985 GAACAGGAGAATCACTTGATGG 59 86793024 86793044 CCAGTAACCATAGCAATACGG 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 1 2 2 80 18 58333470 58333489 GAAAGCCAGCATGATGTACC 59 58333531 58333673 TCTATGAGCTTTCCTGCTCG 60 NA Rattus norvegicus 81 Tnfsf9 ENSRNOG00000045595 ENSRNOT00000071515 2 1 1 111 9 9911800 9911818 ATACTGCAGACCAGGTCAC 59 9910682 9911387 TTACTCAGCGATGCTTGGT 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 1 2 2 80 1 78105722 78105740 CTGTCCACCAACATTGCAG 60 78104384 78105679 CATCTCCTTCACCTTCCCAG 60 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 2 2 2 80 1 78104235 78104254 GACTATGATGCCTTTGCTCC 59 78102138 78104193 ACTCTTCATCTGAAGCACCA 59 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477,ENSRNOT00000066495 2 2 2 80 2 116040719 116040739 AGTGGAAGACCATCTACATCC 59 116040778 116051329 AGTGGAGAGGTTGATAGATGTC 59 NA Rattus norvegicus 81 Ccdc9 ENSRNOG00000048848 ENSRNOT00000075700 3 1 1 80 1 78215199 78215419 CTCGTGCCTATAGTGACCA 59 78215137 78215155 TGGACTGAGAGGATTTGGG 59 NA Rattus norvegicus 81 RGD1306441 ENSRNOG00000031449 ENSRNOT00000043065 3 1 1 114 15 80040889 80041269 GCTAAGTAAATGCTCGGGC 59 80041342 80041365 GTGCACTACTGATAATCTCAACAG 60 NA InUTR Rattus norvegicus 81 RGD1563483 ENSRNOG00000050184 ENSRNOT00000034101 1 1 1 80 15 52782988 52783009 CATTGATGAAGACACCTAACCT 58 52783048 52783536 TGTTGGTGAAACTTGTCAGTC 59 NA Rattus norvegicus 81 Clspn ENSRNOG00000011332 ENSRNOT00000015227 3 1 1 80 5 144607154 144609691 GAAACGGCAAATGAGACTG 57 144609735 144609753 TACTCGTCTTCACTTCCCA 58 NA Rattus norvegicus 81 Rab3a ENSRNOG00000019433 ENSRNOT00000026391 2 1 1 84 16 20436538 20436556 GAACAAGTGCGACATGGAG 59 20435883 20436491 AAAGAACTCAAAGCCCAGGT 60 NA Rattus norvegicus 81 Pik3cd ENSRNOG00000016846 ENSRNOT00000066179 3 1 1 80 5 166608865 166609626 CTGGAGAAGATCCTGGAGC 59 166608469 166608487 GGAGCACAGCAAATAGAGC 59 NA Rattus norvegicus 81 Isoc1 ENSRNOG00000019711 ENSRNOT00000026706 1 1 1 80 18 53738469 53740927 TGCTGTTTGGAGTAGAAACAC 59 53740968 53740987 CGATGTGGACCTCAATACCT 59 NA Rattus norvegicus 81 RGD1563056 ENSRNOG00000009178 ENSRNOT00000012164 3 1 1 83 5 50210798 50213060 CAGAGAAGCATAGTCCTGGA 59 50210734 50210752 GATCAACTGACCCAAGCTG 59 NA Rattus norvegicus 81 AABR07016056.1 ENSRNOG00000004090 ENSRNOT00000005432 2 1 1 60 14 93041311 93041329 TACCAGTCCTGAGTCTCCA 59 93041269 93041289 GTAGTCCTCCATGTAGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reep3 ENSRNOG00000000645 ENSRNOT00000067920 1 1 1 80 20 22986000 22986019 GGACACAGACCTTACCAGAC 60 22986062 22993727 CGGAATTCCATAGGCTGGT 60 NA Rattus norvegicus 81 Otog ENSRNOG00000010983 ENSRNOT00000068434 1 1 1 80 1 102322510 102322529 CAATGAAACTGAGTGTGCCA 59 102323333 102325510 CCATCCTCCTTACACGTCC 60 NA Rattus norvegicus 81 AC103493.1 ENSRNOG00000050390 ENSRNOT00000074475 2 1 1 83 4 1710575 1710595 GCTGGTTTGGATTGTCCAG 59 1710510 1710528 AATGTTTCCCACCACTGTG 58 NA Rattus norvegicus 81 Prm2 ENSRNOG00000002539 ENSRNOT00000003450 1 1 1 102 10 4950654 4950672 TCACAGGATCCACAAGAGG 59 4950860 4950878 CCTCCTTCGGGATCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513,ENSRNOT00000076873 2 2 2 60 13 78900879 78900897 TCTGGAACCCAGTAGTGGT 60 78900920 78900939 GACATGATGGGTACACAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam50a ENSRNOG00000045790 ENSRNOT00000073104 3 1 1 80 4 104954578 104954760 ACTGTTAAGATGAAGAAGGGC 58 104954802 104954820 CTCACTGAAGTCTTTCCGC 59 NA Rattus norvegicus 81 Npm2 ENSRNOG00000025638 ENSRNOT00000032832 3 1 1 81 15 52340741 52341956 CAGGAATGTTATGAGACTTCAGAC 59 52340683 52340703 CCTCATCTTCATCCTCTTCCT 59 NA Rattus norvegicus 81 AABR07007928.2 ENSRNOG00000059867 ENSRNOT00000087827 1 1 1 60 2 35435571 35435589 GCACGATCATCCTGATCCT 59 35435529 35435548 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl22 ENSRNOG00000027039 ENSRNOT00000029238 2 1 1 80 10 43609803 43609824 CTCTTAGAAGCACAAGACATGG 59 43609863 43611833 TGAGGTAGACTCAGCTATGTG 59 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154 2 1 2 80 7 24660070 24667072 CCGGTGATCATGAATCAGG 58 24653191 24660026 TTTCATTGACCCTTCTGGG 57 NA InUTR Rattus norvegicus 81 Olr150 ENSRNOG00000017143 ENSRNOT00000023007 1 1 1 60 1 169386828 169386849 TTCTGCTTTATCTATCTGGTGG 58 169386789 169386808 CTGCGATGAGGTAGAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 1 2 2 80 17 27433732 27433754 GAGATGTGGACATAATGATGAGG 59 27432374 27433698 CAGTCTGGTATAGAATATTGTCCTG 59 NA Rattus norvegicus 81 Plscr5 ENSRNOG00000047917 ENSRNOT00000073400 3 1 1 80 8 99569137 99569158 TGGTCTAGAGTATCTAAGCCAG 58 99573353 99574240 TCAGTGCCGAGTATCATCC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 2 2 2 81 1 88558195 88558296 ACCAGCGAATTCATGTAAGAG 59 88558134 88558155 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Gpr63 ENSRNOG00000007675 ENSRNOT00000010081 3 1 1 81 5 39329620 39329639 GATGCTTGTTAGTGCTGTGG 60 39329681 39368762 ATCTGTTTGCTGTTTCCACAG 60 NA InUTR Rattus norvegicus 81 LOC100910849 ENSRNOG00000047384 ENSRNOT00000072173 2 1 1 123 11 72086623 72086641 CAGTCACCTGAGGTCATGG 60 72084674 72084692 AGAAGGTAGAGCCAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0659.1 ENSRNOG00000051219 ENSRNOT00000076711 1 1 1 60 X 65014879 65014897 AAAGTTCTCAGTGCTGTGG 58 65014837 65014855 GGAACTGCTGCGATTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0659.1 ENSRNOG00000051219 ENSRNOT00000076711 3 1 1 60 X 65014964 65014983 TTCAGGCAGAAATGGAGAGG 60 65014923 65014941 TCTTTGGTCTCCTTGTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000010626,ENSRNOT00000088917 2 2 3 104 6 106068448 106072526 CTAGTGAGCTCATGACACTG 58 106072593 106072611 GTTCCAGCACCTCTTTCAG 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000087752 3 1 2 157 3 149235270 149235289 TCAAGAGGATGGGCTTGAC 59 149237187 149237206 TTTCTTGACCTTGTCTGGCA 60 NA InUTR Rattus norvegicus 81 Inpp5b ENSRNOG00000048506 ENSRNOT00000067762 1 1 1 80 5 142787889 142787908 TCCCATCCATACATTGTGCT 59 142787951 142789875 GTCATCAAGGTCAGCTCGT 60 NA Rattus norvegicus 81 Cebpa ENSRNOG00000010918 ENSRNOT00000014517 2 1 1 60 1 91364508 91364527 GCCGAGATAAAGCCAAACAG 60 91364550 91364568 CTGGTCAACTCCAACACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hadha ENSRNOG00000024629 ENSRNOT00000038649 3 1 1 80 6 27607407 27607425 CTGGTAGGAACATTCGTGC 59 27607469 27613233 TTATTCCTGGTCCTAGCGG 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 1 1 1 80 7 71162682 71162700 TGAGAAAGCTGTGGGATCG 60 71162742 71168702 ACTTGTCAGTGTAGGTTTGGA 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 3 1 1 81 7 71161702 71162591 TCTGATAGCATCAGGCGAG 59 71162631 71162654 GAATGGATGTCTTGTAGTTTCCTG 60 NA Rattus norvegicus 81 Vat1l ENSRNOG00000011989 ENSRNOT00000075628 2 1 1 82 19 46615177 46615197 AGCTCATAGGACTGTACAACC 59 46615241 46689605 CATGGCCTCCTTTACCTCC 60 NA Rattus norvegicus 81 Carhsp1 ENSRNOG00000002610 ENSRNOT00000003514 3 1 1 85 10 7050009 7052406 TGCACATCTCTGATGTGGA 59 7052455 7052473 ATTCTTGGGCGGGATAGAG 59 NA Rattus norvegicus 81 C1ql2 ENSRNOG00000046863 ENSRNOT00000071305 2 1 1 109 13 36378893 36378911 GTACCACATCCTCATGCGT 60 36379567 36379585 CATAATTCTGGTCCGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 2 2 2 80 X 68630150 68631792 TGTCACTTGCATTGATGCT 58 68631836 68631854 CGAACACTTCTGCAAACTC 57 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138,ENSRNOT00000077307 3 2 2 80 5 171280269 171280288 AAGAAAGAAGAGACGAAGGC 58 171280330 171281216 ATTCTCCTTCTCCTGGACTC 58 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000092079 3 1 2 235 15 5306564 5306582 TTCTGTTTCAGTGTCCAGC 58 5307861 5307879 GATGAACGGAGGACATCAG 58 NA DesignNoJunction Rattus norvegicus 81 Tyrobp ENSRNOG00000020845 ENSRNOT00000028284 3 1 1 80 1 88876867 88879066 TGAGTCACCTTATCAGGAGC 59 88879106 88879127 CATCTGTAATACTGCCTCTGTG 59 NA Rattus norvegicus 81 Scin ENSRNOG00000004498 ENSRNOT00000005988 1 1 1 80 6 59997373 59997755 ATACTCAAATTCAGGTACTCCC 57 59997314 59997334 GGTCTTTATCCTTCCAATCCT 57 NA Rattus norvegicus 81 Atic ENSRNOG00000015511 ENSRNOT00000021105 2 1 1 80 9 78874975 78876147 ACTGTGTTCTTCAGATGGAC 58 78876190 78876208 TCTGGCTTAAACGAAGACC 58 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851 2 2 3 88 13 77000212 77004125 TATCTCAGATGACAGTAGAACTGC 60 77004167 77004190 ACGGTCTTACAGAGTTATATCGAG 60 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 1 2 2 80 10 65451254 65451348 GAAGGATCTGAGTACTCCTGC 60 65451387 65451408 TACTCAGCCTTAATCTCTTGGG 59 NA Rattus norvegicus 81 LOC100361174 ENSRNOG00000048515 ENSRNOT00000068076 3 1 1 82 2 191866818 191869121 TTCTAAAGGCAATGGATGAAGG 59 191866757 191866777 GTCCCAAATCTCATCAAAGGT 58 NA Rattus norvegicus 81 LOC100359989 ENSRNOG00000049038 ENSRNOT00000065658 3 1 1 80 3 3237997 3238711 TATACGTTTGACTACCAAGGC 58 3238750 3238771 GCTTTCCAAATCTATGATGGTG 58 NA Rattus norvegicus 81 Lin37 ENSRNOG00000020929 ENSRNOT00000028413 1 1 1 80 1 89012578 89013996 AGTGGAGAAATCAGAGATGGA 58 89012518 89012536 TGACTCTTCTCCAGCAGAC 59 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116,ENSRNOT00000051927 1 2 2 80 1 48345859 48345877 TTGGTGTTTCGCTTTCTCC 59 48343002 48345818 CCCAACAAATTCTGTAATCAGG 58 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883,ENSRNOT00000081916 3 2 2 93 20 32099566 32099586 ACTCAGAGCAGAAGCTATGAC 60 32098254 32099512 TAAGGAAATACCTCAGGCGG 59 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 2 2 2 80 18 61689895 61689914 CTTCATGGACATCAAGGAGC 59 61686816 61689853 TCATTAGATGACATGCTGCG 59 NA Rattus norvegicus 81 AABR07049887.1 ENSRNOG00000047686 ENSRNOT00000074492 3 1 1 60 5 142646362 142646380 GGATGTGTTTGGAGCTTCC 59 142646401 142646422 ACGCTCAAACCTTAAGAAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045,ENSRNOT00000092203 2 2 2 80 10 61207831 61207852 GCATCAAACTTCTTACATGCCT 60 61203316 61207793 GACTGATACCTTGTAGGATGGG 60 NA Rattus norvegicus 81 Ccndbp1 ENSRNOG00000011379 ENSRNOT00000015472 1 1 1 80 3 112951681 112952408 ATCTCCACAGGAAACCCAG 59 112952450 112952470 GGAAATGTGTAGTATGCTGCA 59 NA Rattus norvegicus 81 Psx1 ENSRNOG00000043179 ENSRNOT00000066033 1 1 1 60 3 574170 574188 CAGGAGTCAACAGACTGGG 60 574128 574146 AGTGAACCTGGTGTGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmas ENSRNOG00000013816 ENSRNOT00000018734 2 1 1 80 4 177001555 177001574 TCTGAAACGTCCAAAGACAG 58 177001615 177001755 CACAATGTCAACCTCATTGTG 58 NA Rattus norvegicus 81 Matn1 ENSRNOG00000010932 ENSRNOT00000014666 3 1 1 80 5 149079069 149079087 CAATTCGCCATCACCAAGG 60 149079131 149081105 GACGATGACAACCTTGCTG 59 NA Rattus norvegicus 81 Vash2 ENSRNOG00000003832 ENSRNOT00000005095 1 1 1 80 13 109544095 109544113 TACAGGTTGTCCATGACGA 58 109540453 109544055 CCCTGTATGGTTGTATTGTAGTG 59 NA Rattus norvegicus 81 Olr533 ENSRNOG00000030825 ENSRNOT00000045231 1 1 1 60 3 74574415 74574435 GAATGAACTTCTGCTCTTCGT 59 74574375 74574397 GATGACCAAGATAGTGAGTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem130 ENSRNOG00000025235 ENSRNOT00000039149 3 1 1 80 12 11838259 11838584 GAAGGATGTAGTGGAGAGCC 60 11838626 11838645 GTGTCCAGAAAGAGGGATCC 60 NA Rattus norvegicus 81 Cdx2 ENSRNOG00000032759 ENSRNOT00000048188 1 1 1 80 12 9469716 9469931 TGTTTGGAGCTGAGGAGAG 59 9469975 9469993 TCTTGGCTCAAGTGTTGCT 60 NA InUTR Rattus norvegicus 81 LOC102555170 ENSRNOG00000046069 ENSRNOT00000071914 3 1 1 81 7 142011526 142011544 GTCCCTCCATCTCATCCAC 59 142011587 142020657 CATAGAGTAGAGGACACCCAG 59 NA Rattus norvegicus 81 Sez6l2 ENSRNOG00000027098 ENSRNOT00000037405 1 1 1 80 1 198386941 198391289 GGATTCACTATCAGGCATACC 58 198391331 198391349 GCAAGTCTGTCACACTCAC 59 NA Rattus norvegicus 81 Mroh2b ENSRNOG00000042327 ENSRNOT00000060376 2 1 1 80 2 54684371 54684392 CATTCATTCACCTTCTTCACCA 59 54684430 54685373 ATGGAGAATAATGGCATCTGTG 59 NA Rattus norvegicus 81 Mroh2b ENSRNOG00000042327 ENSRNOT00000060376 3 1 1 80 2 54660783 54662581 TGGAAGATCAGCTTCTGGAG 59 54662621 54662642 ACTGGAAACTTTCCTCTTTCTG 59 NA Rattus norvegicus 81 Radil ENSRNOG00000024456 ENSRNOT00000033998 3 1 1 86 12 14154731 14155582 AGTTCTAGAAGGAGACGCG 59 14155632 14155650 TAGCAGAAGTCCTCTGTGC 59 NA Rattus norvegicus 81 Gdf1 ENSRNOG00000020142 ENSRNOT00000027275 2 1 1 80 16 20853191 20853319 TACTGGTTCCTGTACATTGTG 58 20853131 20853149 GTATTCCCGCAAGTCTTCC 58 NA InUTR Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000076860 1 1 3 80 13 77626339 77626357 AGCAGTACCATGAAGTGCT 59 77626399 77626795 GAAATGAAGGAAGCAAACCTG 58 NA Rattus norvegicus 81 Ptgr1 ENSRNOG00000015072 ENSRNOT00000020335 3 1 1 80 5 76120966 76120984 AAACAGTGCTGGTCAATGC 59 76118420 76120922 CAACTTTGCAGCCCTTGAG 60 NA Rattus norvegicus 81 Olr770 ENSRNOG00000047449 ENSRNOT00000075178 3 1 1 60 3 102841832 102841851 TTTCCTCAGTTACCACTCCA 58 102841872 102841892 GAAATGGTCTTGTGTTCCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000066169,ENSRNOT00000009879 1 2 2 80 5 138246199 138246219 AGAGTGGAGAAGGCTAAACAG 60 138246257 138250955 TCTGTTGAGAGCATAGATCTCTG 60 NA Rattus norvegicus 81 Olr781 ENSRNOG00000048229 ENSRNOT00000045743 2 1 1 60 3 103151640 103151658 TTCTCTGGTTCAACTGGCT 59 103151598 103151616 GTCCAACACATTTCGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nodal ENSRNOG00000000556 ENSRNOT00000000672 1 1 1 80 20 31036145 31036163 ACATGTTGAGCCTCTACCG 60 31036206 31041840 CAGTCACATCCACATCTTGC 59 NA Rattus norvegicus 81 Hrasls ENSRNOG00000001711 ENSRNOT00000002329 3 1 1 80 11 75135390 75135409 CGTCCTTGTTATCAGCACTG 59 75132745 75135348 TGAGGGAATGCCATCTACAG 59 NA Rattus norvegicus 81 Vom1r70 ENSRNOG00000047591 ENSRNOT00000075356 2 1 1 60 1 103064552 103064571 TCTATCTCTGTCACCTGCCT 60 103064593 103064612 AGGTACTGGGACTGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp20 ENSRNOG00000007710 ENSRNOT00000010786 3 1 1 80 3 9850311 9850329 GTTCAACACCTTTGCAGAG 57 9850370 9850467 TATTTATTGGGTGGGATACCTC 57 NA Rattus norvegicus 81 Mamdc4 ENSRNOG00000016584 ENSRNOT00000022390 1 1 1 80 3 2791166 2791603 CCCATCCATTTCGGATCCT 59 2791104 2791123 GGTTGGACATGATAAGGTCG 59 NA Rattus norvegicus 81 Mamdc4 ENSRNOG00000016584 ENSRNOT00000022390 3 1 1 80 3 2792889 2793072 CCACACTGACTCTAGAGATGTC 60 2792830 2792849 GAGCTCTGCCATAGAGTCAG 60 NA Rattus norvegicus 81 Amn1 ENSRNOG00000036917 ENSRNOT00000055441 2 1 1 80 4 183671071 183676101 CCTGATAACAGATCATTCACGA 58 183671012 183671032 TAAACAGACCAAGTCACTTGC 59 NA Rattus norvegicus 81 Aldh1b1 ENSRNOG00000011497 ENSRNOT00000015281 3 1 1 124 5 61382366 61382384 CCAGAATTTGAGCCTGAGC 59 61385284 61385302 AATATGAGGTGGTCCTGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650,ENSRNOT00000071586 1 2 2 99 11 76151525 76151545 AGAAGGTCAAATCATGAAGGG 58 76168674 76168695 AGATGGTTCTCTGTACATACAC 57 NA DesignNoJunction Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 1 2 2 80 3 176542763 176542782 CTACGAGAATGTCACCTCCA 59 176538232 176542721 CCATCCGCATTGTTGTAGAG 59 NA Rattus norvegicus 81 Pex7 ENSRNOG00000012322 ENSRNOT00000016728 3 1 1 80 1 15349244 15349262 TCCGAATTGTGATTCCAGC 58 15348028 15349200 CTGTCACCAGCAAGTTCTC 59 NA Rattus norvegicus 81 RGD1309594 ENSRNOG00000001215 ENSRNOT00000049745 3 1 1 80 20 11419254 11419684 ACACAGAGGAGACAGAAGTC 59 11419193 11419214 GATTCTTCATAGTGTCCCTTGG 59 NA Rattus norvegicus 81 Krt79 ENSRNOG00000058340 ENSRNOT00000081518 1 1 1 80 7 143534832 143534955 GCTTAAGAAGGATGTAGATGCTG 59 143534774 143534794 TCAATCTCTTGGATCAGGCTC 60 NA Rattus norvegicus 81 Olr651 ENSRNOG00000047268 ENSRNOT00000048750 3 1 1 60 3 77110649 77110668 GTCCCATGTACTTCTTCCTG 58 77110608 77110627 ACAGTTGTAGAGAAGCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb6 ENSRNOG00000017962 ENSRNOT00000024161 1 1 1 80 17 32204406 32204425 CAAAGGAAACTGGGACAAGC 60 32204467 32208641 GGTTTCTCCTCAGTCTTGCT 60 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 2 2 2 80 15 12876869 12876889 ATAGATGTTGCAGAGAAGGCT 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 2 1 1 82 2 243170083 243170104 GTGGTTCAATTCAATCGTTTGC 60 243170144 243172275 TCTAGGCTGACAATTAGTCCTG 59 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 3 1 1 97 2 243169671 243169695 CATCTGCTACTATAATACCTACCAG 58 243170136 243172265 CAATTAGTCCTGTGTTGGCA 59 NA Rattus norvegicus 81 Nudcd3 ENSRNOG00000056148 ENSRNOT00000083191 3 1 1 106 14 86333277 86333295 GCTTTCTCTACCGCAAGAC 59 86326735 86333208 TTTAAAGACCTGCAACACCA 58 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 3 2 2 80 6 55482107 55484780 GAATTGTGTTTGTGGACCCT 59 55484823 55484841 GTTCGTAAGCGTAGAGACG 58 NA Rattus norvegicus 81 Sh3bp5l ENSRNOG00000054400 ENSRNOT00000086218 2 1 1 93 10 43769793 43775677 CCTAGGATACAGGAGGAGC 58 43775877 43775895 GATAGGTAGTCCTGGCCTC 58 NA Rattus norvegicus 81 AC099444.1 ENSRNOG00000024617 ENSRNOT00000033807 1 1 1 61 4 78263937 78263955 CTCTGGCTTTGGTTCAGTG 59 78264502 78264520 CACTTCCGGATGCAATCAC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_14_1003.1 ENSRNOG00000052876 ENSRNOT00000078236 1 1 1 60 14 100260359 100260378 GCTTCATGTGCTGTCTTCTG 60 100260318 100260336 TTCTTGTAGCTCTCCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf40b ENSRNOG00000052539 ENSRNOT00000091306 2 1 1 80 7 140971921 140972250 AAGGAGAAGGAACAAGCCA 59 140972292 140972312 GACACTACTCATCCCATCCAG 60 NA Rattus norvegicus 81 Gmnc ENSRNOG00000038505 ENSRNOT00000058701 2 1 1 80 11 77242180 77244190 AAGGCCAAGAAATTGTTGTC 57 77244231 77244251 TTCTTTGGGTTTCCTCTTCTC 58 NA Rattus norvegicus 81 Nfkbib ENSRNOG00000020063 ENSRNOT00000027212 3 1 1 80 1 86941845 86941866 GATGAGGATGATAAGCTTAGCC 59 86941226 86941807 ATATTCATCGCCTTCATCTCTG 58 NA Rattus norvegicus 81 Jmjd6 ENSRNOG00000000250 ENSRNOT00000064671 3 1 1 81 10 105783267 105783285 CTCTGACAGCTCCAGTGAC 60 105782067 105783224 TTCTGACCCAGATTCACACTC 60 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 3 2 2 83 14 13056815 13056836 AGTTTGGTATGGGAAAGAACTG 59 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Dgkg ENSRNOG00000001796 ENSRNOT00000002452 3 1 1 80 11 82063700 82063720 CAGAAATTCCACTACCTGCTC 59 82063761 82066160 AAAGAAGTTCAATCCTGGCG 59 NA Rattus norvegicus 81 Akr1c13 ENSRNOG00000050040 ENSRNOT00000029049 1 1 1 80 17 69639613 69640949 CCAGTGCCAATGAAGTCAG 59 69640992 69641011 ACAGAAATCCACAGTGTCCA 59 NA Rattus norvegicus 81 Olr189 ENSRNOG00000049717 ENSRNOT00000040861 1 1 1 60 1 169952750 169952768 CTGTATGTGGTCGTTCCTC 58 169952791 169952810 TCTGTTTAGTCCTGACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 1 1 1 80 4 88676060 88684036 AATTTCAGGGAGGAAGCCA 59 88675998 88676016 AGACTCAAGCTCATCCTGC 60 NA InUTR Rattus norvegicus 81 Car14 ENSRNOG00000023162 ENSRNOT00000025523 2 1 1 80 2 198011259 198011278 CTAGGTATGGGAATCTCGGC 60 198010603 198011220 CCTCTTCCTCCTAATCTTCTGAG 60 NA Rattus norvegicus 81 Olr13 ENSRNOG00000052361 ENSRNOT00000088514 3 1 1 60 1 149787138 149787159 TACTTCCCATCAGTTACAGACC 59 149787099 149787120 CTCCAAGAATGACAGATTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3r2 ENSRNOG00000019228 ENSRNOT00000026210 1 1 1 80 16 20422770 20422788 AGCAGTACCAGGACAAGAG 59 20422832 20423156 GCTTCATCTGAAGCTCCTG 58 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 2 1 1 60 17 62298106 62299609 GTAATGTGACCATCATGGGC 59 62298065 62298084 ACCAGCATTCTTAGCAAGAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911794 ENSRNOG00000020133 ENSRNOT00000027335 3 1 1 82 1 220429402 220429420 ATCTCTTTGGAGGGCTCAG 59 220429463 220429594 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 Rn60_12_0305.1 ENSRNOG00000051210 ENSRNOT00000076527 3 1 1 60 12 28477083 28477104 AATGTCAACTTTGCTTCTCAGG 60 28477125 28477143 ACTGACTGAAGTTTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000043917 2 1 2 80 11 60819227 60819246 CATGCTTTGTGGAAGACTCC 59 60810623 60819188 CTTATCAGGACAACTTGACTCAG 59 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000042447 1 1 2 80 11 60809836 60819200 CTATGTTGGTGACTGTTAACAC 57 60809777 60809796 TCAGTGGACTAGAAGGACAG 58 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000042447 3 1 2 80 11 60809831 60819195 TTGGTGACTGTTAACACTACAG 58 60809772 60809792 CTTTGTCAGTGGACTAGAAGG 58 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000085067,ENSRNOT00000083682 2 2 3 85 2 243552834 243553405 GCATTAAGATGGTGGCCAC 59 243553454 243553472 TAGAACTGCAGGAAGAGGC 59 NA Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 3 1 1 124 5 173640823 173641569 AGAACCAGGACTGTGACAG 59 173641654 173641675 GACAGACTTTCCTTCTTTCCAG 59 NA InUTR Rattus norvegicus 81 Olr283 ENSRNOG00000030782 ENSRNOT00000043307 2 1 1 60 1 173442778 173442796 TTCTTCTCTTTGGTGGGAC 57 173442736 173442754 GCAAATCGATCATAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar1 ENSRNOG00000016073 ENSRNOT00000021510 3 1 1 60 1 22596124 22596143 CCACCTAGCCTTCATTTCCA 60 22596083 22596104 TTTGTATCTTAAAGGGTCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 2 2 2 84 X 68777364 68777382 ACCTAACGCATCAGTACCC 59 68777430 68778032 GTGCCAACGAAGTTTCCTG 60 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000078663 3 1 2 181 7 142905769 142905787 CCATCCAGAGTCTGCTCAG 60 142905931 142915514 TTGGATACAGGGCATCTCAG 59 NA InUTR Rattus norvegicus 81 Snx6 ENSRNOG00000005249 ENSRNOT00000007300 1 1 1 80 6 75631759 75633667 TCTCAAGCAGCTAAGGACC 59 75631697 75631717 TTTGTCCAGTGCTTTATTGGC 60 NA Rattus norvegicus 81 Snap47 ENSRNOG00000022472 ENSRNOT00000028948 1 1 1 97 10 45786818 45786836 AAAGGTCCTTCACCACCAG 60 45778624 45786757 CTGTCAGCAATCTGTCAGC 59 NA Rattus norvegicus 81 Snap47 ENSRNOG00000022472 ENSRNOT00000028948 2 1 1 98 10 45786819 45786837 CAAAGGTCCTTCACCACCA 60 45778624 45786757 CTGTCAGCAATCTGTCAGC 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 3 2 2 83 7 116959578 116959850 AGTTCATCTACTCACTGGACC 59 116959515 116959533 CTGAGAGGATGATGGGCTC 59 NA Rattus norvegicus 81 RGD1310081 ENSRNOG00000042118 ENSRNOT00000063899 2 1 1 80 2 57335918 57335938 CAAGTGTTAGTTTCCGACCAG 59 57335979 57337494 GTCCTAGTTGTTCCTTGGGT 59 NA Rattus norvegicus 81 Olr107 ENSRNOG00000015901 ENSRNOT00000021282 1 1 1 60 1 168623739 168623757 GCGTCTATGGATTGGTCTG 58 168623779 168623799 ACTAAGATGAAGATTGCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 3 2 2 80 4 89165554 89165575 ATCCCACTGTGAAACTATTCTG 58 89165614 89167467 CTGTCAGGAACAAGAGAAACC 59 NA Rattus norvegicus 81 RGD1564541 ENSRNOG00000012564 ENSRNOT00000016993 2 1 1 80 X 123465960 123465979 GTAGTGAAATTTGGCCAAGG 57 123465033 123465920 GGTCATCATAACCTTCTTAGGA 57 NA Rattus norvegicus 81 Mppe1 ENSRNOG00000018648 ENSRNOT00000025164 2 1 1 81 18 62955909 62960402 GGACAAATTGCGAAGGGAG 59 62955846 62955867 AATGAAGACTACTTCTGGTTGC 59 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197,ENSRNOT00000001325 2 2 2 114 12 2203039 2203057 CATTGCTGGTCAGTCTCCT 59 2203383 2203401 TTGTATCCTCACGGACGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_20_0031.1 ENSRNOG00000039966 ENSRNOT00000061411 1 1 1 74 20 3076643 3076661 TTCTGCTGCCTTCTTTGTC 58 3079184 3079202 AACTGTGTAGGTGGGTTCG 60 NA DesignNoJunction Rattus norvegicus 81 Sptssa ENSRNOG00000004292 ENSRNOT00000005825 3 1 1 80 6 75551467 75551488 TTCTACTACCAGTACTTGCTGG 59 75541249 75551428 AACCAGCATCGAATTGAACAC 60 NA Rattus norvegicus 81 Btg1 ENSRNOG00000004284 ENSRNOT00000005910 3 1 1 99 7 37812892 37812910 TCATCTCCAAGTTCCTCCG 59 37812972 37813787 TGTTTGTAATGCTCTGCCAG 59 NA Rattus norvegicus 81 LOC367975 ENSRNOG00000047100 ENSRNOT00000071436 2 1 1 81 X 124158481 124158499 GACCTTACACTCTTGTGCC 58 124157652 124158436 TCATGGTGGCAATTGTTGG 59 NA InUTR Rattus norvegicus 81 Lrrcc1 ENSRNOG00000010891 ENSRNOT00000014762 1 1 1 80 2 88398559 88398578 TTGAGAACTCTGGAAAGAGC 58 88397577 88398517 TTGGATCAGTCTCATCTGTG 57 NA Rattus norvegicus 81 Gng2 ENSRNOG00000048980 ENSRNOT00000071133 3 1 1 67 15 4850168 4850186 CACATGCCAAGGAAGATCC 59 4850217 4850235 CTTCTTCTCCCGAAAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 1 1 4 69 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71961180 71965810 TCTATCAAACTGCTGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Dlst ENSRNOG00000005061 ENSRNOT00000007298 1 1 1 80 6 108944258 108944278 ATGTGATTACAGTCCAGACCC 60 108944319 108944539 CATCTCCAACAGCTTTCTCC 59 NA Rattus norvegicus 81 Sync ENSRNOG00000008118 ENSRNOT00000010730 2 1 1 89 5 147483421 147495537 CTACAGTACAGGGAGCAGC 60 147495590 147495608 CTCCTTGTTCTTCTGCTGC 59 NA Rattus norvegicus 81 Chst8 ENSRNOG00000022919 ENSRNOT00000037700 1 1 1 83 1 90616322 90616340 GACCCTATAGAGCTCAGCC 59 90543564 90543989 CAAGTGGCTATCATGCTGG 59 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 3 1 1 60 1 81594141 81594161 GAACTGTGTAACAATGCTGAG 58 81594012 81594120 GGGCTTTAACTGATAGGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Mlycd ENSRNOG00000014522 ENSRNOT00000019923 2 1 1 83 19 52041283 52045426 AACAACATCCAGAGCATTGTG 60 52045471 52045489 GGAGTAGAAGACAGCAGCA 59 NA Rattus norvegicus 81 Cabp7 ENSRNOG00000057703 ENSRNOT00000078179 2 1 1 88 14 84970791 84971534 TAGATATGGATGGTGACGGC 59 84970722 84970740 CTTCTCTGGGATCCCTGAG 59 NA Rattus norvegicus 81 Rn60_4_1360.2 ENSRNOG00000050918 ENSRNOT00000075024 1 1 1 80 4 71276447 71277255 GTTCAGATATCAAATGGCTGG 57 71276387 71276407 CAAACTGACTAGTTCTTGCAC 58 NA Rattus norvegicus 81 Cfap53 ENSRNOG00000014585 ENSRNOT00000019573 1 1 1 80 18 70263703 70273605 TGATCATAAGAGCCAAGCCT 59 70273648 70273666 GATACTTGTGGTAGCTGCG 58 NA Rattus norvegicus 81 Vps35 ENSRNOG00000017612 ENSRNOT00000024020 2 1 1 80 19 27488308 27488329 AAAGAGCATGAGCTGTTATGTG 59 27488369 27489513 ATGGAATCTACCTGGTCCTG 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097,ENSRNOT00000044956 1 2 2 86 8 111840629 111843632 CCAGTAACAGTTACAGAAACCC 59 111840564 111840582 TTTCCTTGTCGTGGTTAGC 58 NA Rattus norvegicus 81 Olr1241 ENSRNOG00000050355 ENSRNOT00000074575 3 1 1 60 4 1535627 1535647 TTACTTCTGTGACATCCCTCC 59 1535668 1535687 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 1 2 2 80 6 76063468 76063487 CACCATGACCAATGTCTTCC 59 76059981 76063429 AGGTAGGTCTTATAGTCCATCTC 58 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 3 2 2 85 X 124442861 124442881 GTGTTTATCAGCTTTGGTGTG 58 124436103 124442817 GGTTTCAAATCAATGTGTCTGG 59 NA Rattus norvegicus 81 Mphosph6 ENSRNOG00000050087 ENSRNOT00000072416 2 1 1 80 19 50362875 50367080 GCATGAAGTTCATGCAGAG 57 50362813 50362832 CATCACTGATCATCTTCCGT 58 NA Rattus norvegicus 81 LOC680646 ENSRNOG00000022450 ENSRNOT00000036337 3 1 1 81 6 58388534 58388556 GGGACTATAATGGTCATGTAGGT 59 58388595 58388640 ATCTTCACCCATAGACCTTGG 59 NA Rattus norvegicus 81 Vps4a ENSRNOG00000020351 ENSRNOT00000050612 2 1 1 80 19 39235202 39235221 AAGCCAAGAACTACGAGGAG 60 39235263 39235376 GGGCTTCATATTTGATGGCG 60 NA Rattus norvegicus 81 Alkbh5 ENSRNOG00000028341 ENSRNOT00000034006 1 1 1 80 10 46915951 46915970 GAGATCACTCACTGCATACG 58 46916010 46926513 TGCATCTAATCTTGTCTTCCTG 58 NA Rattus norvegicus 81 Six1 ENSRNOG00000022777 ENSRNOT00000034338 3 1 1 100 6 95931063 95933130 CAAGGAAAGGGAGAACACC 58 95930981 95930999 CTTCTGAGCTGGACATGAG 58 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 3 2 2 93 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952981 47958505 ACTGGATTTGAGTGGTGCA 60 NA Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 3 1 1 60 4 165828195 165828213 CACTTTGGAAACACAGCAG 58 165828153 165828173 GTGTTGAGATCTCTGAATCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 2 1 1 80 3 112672937 112672956 TTCGAGAATGGGAAGACCAC 60 112672408 112672894 CCATCATGGCTCTGATCCT 59 NA Rattus norvegicus 81 Vom1r14 ENSRNOG00000052260 ENSRNOT00000092184 2 1 1 60 1 60281050 60281068 TTGAGTGTCTTCCAAGCCA 59 60281008 60281029 CTTTAAGACCATTAAGGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 2 3 3 80 11 67251994 67252013 CCAAGAAGGGAGAAAGACTC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Tgfb3 ENSRNOG00000009867 ENSRNOT00000013516 2 1 1 80 6 109917657 109919340 AAATTCAAAGGAGTGGACAACG 60 109917598 109917616 GTTGTGGTGATCCTTCTGC 59 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 3 1 1 175 X 106791472 106791965 CTTGCTTGAATTCAGCAGGT 59 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1560556 ENSRNOG00000022791 ENSRNOT00000032743 3 1 1 80 6 78625363 78625382 AGGTACAAATCGAGGTACCC 59 78625422 78626378 CATAGATACTTGGCACAGTTGG 59 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 1 1 1 60 4 161278132 161278151 AACTGCAAATCACCAAAGGA 58 161278091 161278109 TCATCATTGAGCCACTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 2 2 2 80 4 9982182 9982200 CTCTATCCCAAACGTGCTC 58 9982244 9990350 TTGTCAAGCTCCTCTTTGG 58 NA Rattus norvegicus 81 Pramef25 ENSRNOG00000027000 ENSRNOT00000037478 3 1 1 80 5 162416674 162416692 CAGGATGATGTTGCAAGCT 59 162416131 162416631 TTAAGCTTCTGCCTTCTTGG 58 NA Rattus norvegicus 81 Zfp770 ENSRNOG00000043037 ENSRNOT00000067646 3 1 1 60 3 105661612 105661632 AGGTATGAGAGTTCAGAGTCC 58 105661572 105661590 CCTCCGATTCTTCCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1 ENSRNOG00000047683 ENSRNOT00000072647 3 1 1 81 1 220423500 220423518 GGAGGCAGATGAGAGTGAG 59 220423562 220423686 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 Slc5a8 ENSRNOG00000006367 ENSRNOT00000008613 2 1 1 80 7 29444720 29451767 TGGCTTTGAATCAAGTTACAGG 59 29451807 29451826 GTGTGCAGTAGAATGTGCAG 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310,ENSRNOT00000040188 1 3 3 80 3 146390333 146396189 GAGTTTCAGCTTCAAAGAACC 58 146390273 146390292 AATAGCCTTTCTGCTTGTCG 59 NA Rattus norvegicus 81 Serf2 ENSRNOG00000015277 ENSRNOT00000056151 1 1 1 88 3 113416435 113416453 TGAAGAAGCAGAGCGACTC 60 113416505 113417153 CATGATCTCCGAGTCCCTC 59 NA InUTR Rattus norvegicus 81 Btbd17 ENSRNOG00000003109 ENSRNOT00000004191 3 1 1 92 10 103336240 103337504 GTTCATCAGGTATTTGTACTGTGG 60 103336171 103336191 GATGCTACTCGGTATTTGGTG 59 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 3 2 2 80 3 3541059 3541078 CCTACGATACCATGGTGGAG 60 3517149 3541016 CTGGTTTCTCTTGCACTGC 60 NA Rattus norvegicus 81 Yrdc ENSRNOG00000025424 ENSRNOT00000039870 3 1 1 84 5 142846510 142848673 TGAGTGTTGAGGAGTTCCA 58 142848721 142848739 TCAGGGCTTTCACTATCCC 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 1 1 1 80 1 167000680 167005711 GATTCAAGATCTGATAAGCGAGG 59 167000622 167000640 TGGGTCAGTGACTTTCCTG 59 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 2 2 2 86 6 99388226 99388244 CGTTTACTTCAAAGCCCAC 57 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Nrtn ENSRNOG00000048651 ENSRNOT00000072592 3 1 1 171 9 10305522 10305540 TGCTGTCTGTCTGGATGTG 60 10306131 10306150 GAAAGTTCTCGAAGCTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368,ENSRNOT00000077491 2 2 2 97 18 52036435 52036457 CCTTTGGACTCTTGAGAAATCTC 59 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC690082 ENSRNOG00000047724 ENSRNOT00000023181 2 1 1 112 1 146968005 146968023 GTAACATCCAAGCCCAGGT 60 146967827 146967845 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Obp2a ENSRNOG00000042407 ENSRNOT00000064745 2 1 1 82 3 2910102 2910120 CTTACCGTCCTGCTACTGG 60 2910165 2910710 GTCCCAGAGTAATCCTCCTG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181,ENSRNOT00000090273 1 2 2 80 20 20447691 20448803 GAATGCCACAACTGATGCC 60 20448847 20448865 ATTGGTCCTTCCAGCAGAG 59 NA Rattus norvegicus 81 Rrp9 ENSRNOG00000012927 ENSRNOT00000017469 2 1 1 80 8 115185198 115185216 TTACGTGCTTGGTCATCAC 58 115185256 115186006 CTACACTCCACTTTATGATGGTG 59 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 2 1 1 65 1 228142911 228143204 TTTCAGATACTTGGGCAGC 58 228143233 228143251 AAGTTGGAACTGGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_1641.1 ENSRNOG00000051225 ENSRNOT00000076898 2 1 1 60 5 160288730 160288749 CCAAGCTCTATGTCAAGCAG 59 160288772 160288790 ATGGATTCTGGACGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpusd3 ENSRNOG00000009084 ENSRNOT00000068001 3 1 1 82 4 145368326 145368501 GCATTGATCTTGCAGTCCC 59 145368262 145368280 ATGGAAATGGCTGAGGGTC 60 NA Rattus norvegicus 81 AABR07022046.1 ENSRNOG00000023091 ENSRNOT00000031419 1 1 1 60 13 104156267 104156287 TTACTGCTTGAAGAGGAACCA 59 104156227 104156246 CGTCCATGATTTATCCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502660 ENSRNOG00000031514 ENSRNOT00000050168 1 1 1 60 3 103556967 103556988 CACTCAGATGTTCTTCATTCAC 58 103557008 103557027 CATGACTATGAGCAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 3 2 2 80 9 67699613 67702707 CTTCTCTGAAGCCATACAAGTG 59 67702747 67702766 TATTCACATGGAAAGCTGGC 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 3 2 2 80 11 83913106 83913269 GAGAGCTCTTTAGGGAAATTACG 59 83913048 83913066 AGAGACCCAGGATCTCCAG 60 NA Rattus norvegicus 81 Klf7 ENSRNOG00000012961 ENSRNOT00000017901 3 1 1 83 9 70787215 70787375 ACAAGAAGAGGAGGGTCCA 60 70787150 70787168 TCTGGTGGGCCTTTAAGTG 60 NA DesignRelaxed Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000048109 2 1 4 108 18 6778976 6778994 CTTCTACATCACTGCGCAG 59 6776923 6778906 ATAATTGATCGTGGTGACTCC 58 NA Rattus norvegicus 81 Alkbh7 ENSRNOG00000047089 ENSRNOT00000072118 3 1 1 80 9 10046282 10046302 ATCTCTGGTCCATGTATTGGA 58 10046115 10046243 GTAGATCCACAGAACTTGACAC 59 NA Rattus norvegicus 81 Dusp6 ENSRNOG00000023896 ENSRNOT00000037844 1 1 1 93 7 41475914 41475933 GAGAACACAGGTGGAGAGTC 60 41475988 41476476 TACTGAAGCCACCTTCAAGG 60 NA Rattus norvegicus 81 Tas2r129 ENSRNOG00000031107 ENSRNOT00000051110 2 1 1 60 4 167024775 167024794 GAAGATGCAACAACATGCAC 59 167024734 167024753 GACTTTGATGTGAGCATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120 2 1 2 98 8 116094999 116095545 CGGAGAGGATTAAGTCTGC 57 116095607 116095625 AGAGGATGGGAGATCACAC 58 NA InUTR Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120 3 1 2 99 8 116095000 116095547 GGAGAGGATTAAGTCTGCCC 60 116095609 116095627 GCAGAGGATGGGAGATCAC 60 NA InUTR Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 1 2 2 80 15 109364871 109376866 GTCGAGCATTTAAAGAAACAGG 58 109364812 109364832 CTCCCAGAAAGATACTCAGCA 59 NA Rattus norvegicus 81 Fam71a ENSRNOG00000029371 ENSRNOT00000043672 3 1 1 60 13 109768622 109768641 AGTCATCGGAAAGCCTACAC 60 109768581 109768600 TCTGGTCCCTTCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med1 ENSRNOG00000005606 ENSRNOT00000067901 2 1 1 80 10 86135176 86141182 AAGTCATGGAGAAGAGGGT 58 86135114 86135133 GAGCCTTCTGTAATGTCTCC 58 NA Rattus norvegicus 81 Olr629 ENSRNOG00000047271 ENSRNOT00000044692 3 1 1 60 3 76695888 76695907 AGACCTCTGCTATACATCCA 57 76695847 76695870 CCTTTCTATGATGAGATCACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454,ENSRNOT00000066455 3 2 2 151 1 219863071 219863327 CCTGCTGCTAACTATGATCC 58 219862384 219862403 TAACTTGGTTTCGTAGCCAG 58 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 3 2 2 80 2 235350413 235351813 TTCATCATCCAGGCCTGTC 60 235351855 235351875 CTTGTCTGTCTGATGATCCAC 59 NA Rattus norvegicus 81 Klhl28 ENSRNOG00000004218 ENSRNOT00000005821 1 1 1 80 6 86695828 86703609 GCCTGTTTGGATAGTGTGG 59 86695766 86695787 ATAGCGAGGAATATTTAAGGGC 58 NA Rattus norvegicus 81 Klhl28 ENSRNOG00000004218 ENSRNOT00000005821 3 1 1 80 6 86695829 86703610 TGCCTGTTTGGATAGTGTG 58 86695767 86695787 TAGCGAGGAATATTTAAGGGC 58 NA Rattus norvegicus 81 Xrcc1 ENSRNOG00000019915 ENSRNOT00000027057 3 1 1 80 1 81438786 81438806 CACAGATGAGAACACAGACAG 59 81438848 81440294 TTGCCCTGGAAGAAGTCTG 60 NA Rattus norvegicus 81 RT1-M1-1-ps ENSRNOG00000061923 ENSRNOT00000088528 3 1 1 80 20 2436562 2436822 CCTGAATGAGAAATGAGATCCT 58 2436503 2436522 GCATGATAACCTGGAGAAGG 58 NA Rattus norvegicus 81 Dok2 ENSRNOG00000013922 ENSRNOT00000018725 2 1 1 85 15 52451367 52452358 AGACCTTTGGCAAGAAGTG 58 52452407 52452425 ATCCTGGAGCTCTAGTCTG 58 NA Rattus norvegicus 81 Ifngr1 ENSRNOG00000012074 ENSRNOT00000016286 1 1 1 80 1 15074394 15074414 TGACGGAAATACCTGTTACAC 58 15074453 15076891 TGTTCTGTATGTAGGATCTCCC 59 NA Rattus norvegicus 81 Nip7 ENSRNOG00000020391 ENSRNOT00000027653 3 1 1 80 19 39258151 39258758 ACGCCAAGTATAAAGTGTGGA 60 39258800 39258818 CCAGACCGGATTTCAACAC 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351,ENSRNOT00000080083 2 2 2 80 10 46989036 46989055 TTTCAGGTTCTAAGGCAGCA 60 46987241 46988993 CTCATCCAGCTTCTTTGCC 59 NA Rattus norvegicus 81 Hoxa2 ENSRNOG00000005968 ENSRNOT00000008023 1 1 1 93 4 82133134 82133152 GATGAAGGAGAAGAAGGCG 58 82132416 82133077 TTCCAGGGATTCTTTGTGG 57 NA Rattus norvegicus 81 Sry ENSRNOG00000051574 ENSRNOT00000084732 2 1 1 60 Y 327205 327223 TGCATTTATGGTGTGGTCC 58 327246 327265 CATGCTGGGATTCTGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdo2 ENSRNOG00000011612 ENSRNOT00000015732 2 1 1 82 2 180904080 180904098 GTTCCGGAAGCAGAAAGAG 59 180902914 180904035 GTCGTCGTTCACCTTTACTC 59 NA Rattus norvegicus 81 Pold1 ENSRNOG00000019681 ENSRNOT00000026797 2 1 1 80 1 100544779 100544797 TGTGAGCTTCCACTTCCTG 60 100544476 100544738 TGTTCATTCCCATTCTGTAGGT 60 NA Rattus norvegicus 81 Megf9 ENSRNOG00000005932 ENSRNOT00000007812 3 1 1 80 5 86590563 86609253 GCACCATAGAATTTGGTGC 57 86590501 86590520 CACATGTATTGCAGTTCTGG 57 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 3 2 2 80 5 50061014 50061032 GGAGTCTAACAGAGACCCT 57 50060053 50060972 GTTTCACATCTGGACAATCCT 58 NA Rattus norvegicus 81 AABR07021239.1 ENSRNOG00000025794 ENSRNOT00000033201 1 1 1 60 13 62524468 62524487 CTCCGGTCACAAAGATACGA 60 62524427 62524447 TCATGTTCCTCAGAAACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502684 ENSRNOG00000023721 ENSRNOT00000055415 2 1 1 80 3 147909132 147909150 CAGACTTCTGCTGAAGACC 58 147909193 147910330 TTCAGCTGCTTGATAAGCTC 58 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 2 2 2 82 8 116314190 116314212 TTCATGGTAGTAGATGATCCTCG 59 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 3 3 3 71 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82261076 82261094 CCGTGACTCCCATACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Myot ENSRNOG00000050004 ENSRNOT00000016511 1 1 1 80 9 37731299 37731320 GTTCTATATTACCGTCTCAGCC 58 37731358 37735371 CTGAGGATTGTTGATAGTTGGA 58 NA Rattus norvegicus 81 Ltv1 ENSRNOG00000015217 ENSRNOT00000020453 2 1 1 80 1 7325477 7325495 GCACCATTCAAGTGGACAG 59 7324628 7325435 ACTTTACACAGTTCTCTGCCT 59 NA Rattus norvegicus 81 Cd3eap ENSRNOG00000016825 ENSRNOT00000034266 3 1 1 87 1 80270665 80270683 GAAGTGTGGCTTATCCGAG 58 80269510 80269529 TAACAGTCTTGGAGCCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 3 1 1 129 16 20672607 20673164 CGTCTAGACCAAGCTCACC 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 LOC360919 ENSRNOG00000039504 ENSRNOT00000060548 2 1 1 80 14 19059464 19059485 GCTATGAAATAGCCGTTCAGTC 60 19057375 19059425 TTCTGATGGGCTCTAACTTGG 60 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 3 2 2 80 3 114052822 114053064 CTTCCAAGTTGATAGGTCCTG 58 114052762 114052780 CAGGAAAGCTCTGGTTCTG 58 NA Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 2 1 1 60 3 74544674 74544693 CTTCTGTGACATACCTCCCA 59 74544633 74544656 CAGCTCATTAATAGAAGTGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 1 1 2 115 15 24327812 24332207 TTCTAACTGGCATCTGTTATGC 59 24332283 24332301 TTCATGCAGTTAGCTCTGC 58 NA InUTR Rattus norvegicus 81 Armc2 ENSRNOG00000026217 ENSRNOT00000031047 3 1 1 80 20 46825826 46825845 GCTGTATAAGCTAGTGGACG 58 46820079 46825785 CCACTCACTTTAAGTGCTAGG 59 NA Rattus norvegicus 81 Slc7a5 ENSRNOG00000018824 ENSRNOT00000025784 2 1 1 80 19 54699253 54699272 GATCATTCCTGTCTTCGTGG 59 54698860 54699211 ACGAAGAACAGTCTTGAGGA 59 NA Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 2 1 1 62 7 123283119 123284470 GAAAGGAGCCAATGAAGCC 59 123283075 123283095 GCCATCACAATGAACTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC688613 ENSRNOG00000043197 ENSRNOT00000064487 1 1 1 67 7 123482573 123482591 TGACAGATGCAGAGAACCC 59 123489568 123489586 AAACCAGTCCAGAAAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 1 3 3 100 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613722 80614139 ATCAGTACCGTCAGTTCCTG 59 NA Rattus norvegicus 81 Ppp1r9a ENSRNOG00000008869 ENSRNOT00000011756 1 1 1 80 4 30198534 30198553 AAGAAAGAAGCTGGAGGAGG 60 30198594 30198707 GCCTCCAAATCTCTAATCCGA 60 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 2 1 1 80 16 6106500 6106518 ATCCAGTTCCACTTCCTGC 60 6106562 6106977 CACATGTACCTGGTAGGCC 60 NA Rattus norvegicus 81 Plekhd1 ENSRNOG00000038297 ENSRNOT00000058301 3 1 1 80 6 104353864 104354197 CCATCCTAAGGGTGTCATCC 60 104354240 104354258 ATCTTCATGGCATAGGGCA 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 1 2 3 80 9 50929802 50930817 GAAACAGACCTTGGCAAAGAG 60 50930858 50930877 TTCAGAAGCTTCTCTGTGGT 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 2 2 2 80 9 79988099 79989912 ACTACCTCTACAAGGACCCA 59 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 2 2 2 80 1 84136753 84136771 GAAGGGAGCTTCAAGTGTG 59 84136604 84136709 ACACTCATCCACATCCTCG 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 1 2 2 80 3 128336308 128336428 CTGCGAGAAAGAGAAGAAGG 58 128336471 128336489 TCTTTGGACTTGGCTTCTG 58 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 2 2 2 80 3 128336299 128336421 GAAGGAAATCTGCGAGAAAGAG 60 128336459 128336480 TTGGCTTCTGTTATCTTCTCCT 59 NA Rattus norvegicus 81 LOC688286 ENSRNOG00000045615 ENSRNOT00000071406 3 1 1 81 10 106880577 106881132 CCTCATCTCTGTGATGGGTC 60 106880515 106880533 CTCATAGACGTGGAGGTGG 59 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 2 1 1 90 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476956 111480920 CTCTTAGCTCACTCGATGC 58 NA Rattus norvegicus 81 LOC100361993 ENSRNOG00000022144 ENSRNOT00000003557 3 1 1 60 13 107580901 107580919 TGGGAAATTTATGCCTGCA 58 107580943 107580961 AAGTTTGGCAACCATCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g15 ENSRNOG00000019859 ENSRNOT00000026996 2 1 1 81 19 38141731 38141749 GTAGATGTGCGTGTTCCTG 59 38141794 38142046 AATAGGAACCCACGTTCCT 58 NA Rattus norvegicus 81 Snta1 ENSRNOG00000016062 ENSRNOT00000021715 1 1 1 84 3 149901781 149901799 AGATTTGTCCTCTGCCACC 60 149880955 149901739 CATATACTTAACCTCCAACACAACC 60 NA Rattus norvegicus 81 Dnase1l2 ENSRNOG00000042352 ENSRNOT00000012203 2 1 1 80 10 13814206 13814227 CTTCAATGTTCAGAGCTTTGGA 59 13814008 13814165 TAGCCAGCCAGAATCTGTG 60 NA Rattus norvegicus 81 Rpe ENSRNOG00000038085 ENSRNOT00000079912 2 1 1 81 9 73707445 73707842 GAATGGGATGAAGGTTGGC 59 73707881 73707905 CATATCTATTTGATTAGCCCATGGG 60 NA Rattus norvegicus 81 Plekhn1 ENSRNOG00000020295 ENSRNOT00000038556 2 1 1 80 5 173647276 173647455 CTGGATGAGTTCCTCTGTG 57 173647214 173647232 CACAGACACAGAGACTGAG 57 NA Rattus norvegicus 81 Apoc2 ENSRNOG00000018402 ENSRNOT00000024800 3 1 1 82 1 80589273 80589761 AGAAACTGAGGGACATGTACAG 60 80589212 80589231 GAGAGTAAGGAGCTGGTCTG 59 NA Rattus norvegicus 81 Olr625 ENSRNOG00000050217 ENSRNOT00000051292 3 1 1 60 3 76626386 76626406 TGGACATTTGCTATACCTCCT 59 76626346 76626364 CTCCTTACAAGCAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr592 ENSRNOG00000049572 ENSRNOT00000075834 1 1 1 60 3 75971437 75971457 TCTATACCATTGTGACTCCCA 58 75971477 75971497 ACTTCCTTGTTCCTAAGAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 1 2 2 80 2 248723398 248724220 GATTGGCAAGGGTACAGGA 59 248724264 248724282 GAGCTGCTCATTGTTCTCC 59 NA Rattus norvegicus 81 AABR07029933.3 ENSRNOG00000056846 ENSRNOT00000087783 3 1 1 60 10 60503715 60503738 TCTGTAGTATCACTGTTCTATGGG 59 60503678 60503702 TATTACCTGCTGGACATAAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 2 2 2 80 1 188035923 188061851 GCCTAGTATTCACAGTGTTCG 59 188035863 188035881 AGGAATACTGGCCGATGAC 59 NA Rattus norvegicus 81 Olr1499 ENSRNOG00000061111 ENSRNOT00000083428 3 1 1 60 10 60572936 60572956 CTTGTTTCTCAGCAACTTGTC 58 60572896 60572914 TTTGGGCATTGTGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syngr2 ENSRNOG00000050547 ENSRNOT00000074225 2 1 1 91 10 106815618 106815999 CCTGCTCTTCTCAGCTCTC 60 106816054 106816072 ACACGTCATCAGGTTTGGT 60 NA Rattus norvegicus 81 Pnpt1 ENSRNOG00000003600 ENSRNOT00000004919 2 1 1 80 14 113554451 113554472 ATATTTGCACCAACACCTACTG 59 113554510 113554617 TTGTTGCTCTTGATCATCTCTG 59 NA Rattus norvegicus 81 LOC499339 ENSRNOG00000012574 ENSRNOT00000033724 3 1 1 80 1 245499089 245502823 ATTGCTAATGGCCAGTACTC 58 245499028 245499047 TATCTGCTTCACAAGCTTGG 58 NA Rattus norvegicus 81 Panx3 ENSRNOG00000031675 ENSRNOT00000042717 2 1 1 80 8 40134620 40136920 GGAGTTCTCATCAGGGTCTC 59 40134559 40134577 GAGCTGTCCACAAACACAG 59 NA Rattus norvegicus 81 Rassf6 ENSRNOG00000002866 ENSRNOT00000003836 2 1 1 80 14 19017076 19017099 CTTTACCGTATTAGTGAGATGGAC 59 19017135 19017872 GCAAGATAAATAGTCTTCCGGG 59 NA Rattus norvegicus 81 Gpr101 ENSRNOG00000027658 ENSRNOT00000033219 1 1 1 110 X 140301791 140303540 AGCAACAGATAGTGTGCAG 58 140301699 140301717 TTGAGTACTGTTGGTGCAG 58 NA InUTR Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 1 1 1 97 3 12454337 12467443 GCAATTCAAGATTACGTCTCGT 60 12454261 12454279 TAGTTGGCTCAGAACGGTG 60 NA Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 2 1 1 98 3 12454336 12467442 CAATTCAAGATTACGTCTCGTG 58 12454259 12454277 TTTAGTTGGCTCAGAACGG 58 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 2 1 1 65 15 27965963 27968276 ACATCCCACTTCTGTGAGC 60 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irak2 ENSRNOG00000021817 ENSRNOT00000029819 2 1 1 80 4 145647546 145649914 CACCTCAGGAAGCTACAGAG 60 145649954 145649975 ACAGTAGGATGTTCTCCATCAG 59 NA Rattus norvegicus 81 Daam1 ENSRNOG00000004345 ENSRNOT00000005846 1 1 1 80 6 94703279 94710600 AAGACAGCAGAAAGAAGCAG 59 94710642 94710661 CCATCAATCACTGACAGCTC 59 NA Rattus norvegicus 81 Zfp518a ENSRNOG00000036592 ENSRNOT00000054717 1 1 1 161 1 260171523 260171927 CAACCTGTAATCAGGTGCA 58 260172052 260172070 TGTGTCTGTTCAAATGGCA 58 NA InUTR Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 1 2 2 92 4 181346953 181347347 GAAGTTGTGGAGATAAGCCAG 59 181346881 181346899 TCTGTGTAAGTGGGAAGCG 60 NA Rattus norvegicus 81 Ggt7 ENSRNOG00000018441 ENSRNOT00000025315 2 1 1 80 3 151019370 151019686 ACCCATGATCTAGCTCATGC 60 151019309 151019327 CAACGGCAGGAAAGTTTCC 60 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 2 2 2 81 9 74047918 74047937 CTTTCCGAATCCTTATGCCG 59 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Adnp2 ENSRNOG00000053370 ENSRNOT00000078496 3 1 1 81 18 76647867 76652550 CTGCTGAAGGATCTTAAAGGC 59 76647806 76647827 GTTCCCAAAGAGAAACATCTCC 59 NA Rattus norvegicus 81 AC114343.1 ENSRNOG00000051860 ENSRNOT00000089631 3 1 1 198 15 28028954 28028972 ATGATGCAGCCAAAGACTC 58 28029134 28034118 GTCACCTAGAAAGTGCACG 59 NA InUTR Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 3 1 1 60 10 86565535 86565553 CCCTGTTAGTCACCATGGG 60 86565574 86565595 ACATAGTGGATCAGATAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh3a1 ENSRNOG00000002331 ENSRNOT00000003182 3 1 1 81 10 47495706 47495973 ATGGACCAGAATCTGTACCT 58 47496017 47496035 TGATGTGGTCAAACCTCTC 57 NA Rattus norvegicus 81 Nudt1 ENSRNOG00000001260 ENSRNOT00000001700 3 1 1 85 12 16394209 16394871 GCTAAGAGGGAGCTTCTGG 60 16394142 16394162 GAGCCCACAAACTCAAATGAG 60 NA Rattus norvegicus 81 Cox18 ENSRNOG00000003052 ENSRNOT00000004074 2 1 1 80 14 19435127 19436366 TACATCCTTGCTAAGGTGGA 58 19436409 19436427 ACAGACTGCAACTTCTTGG 58 NA Rattus norvegicus 81 Olr312 ENSRNOG00000050629 ENSRNOT00000072701 1 1 1 60 1 213404426 213404445 AGTAACAGAGTTTGTGCTGG 58 213404467 213404486 TGCCAGGAACAATCTTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdhd1 ENSRNOG00000011167 ENSRNOT00000015100 2 1 1 80 15 24048637 24050558 ACCGGGAAGTTTCTAGCAG 59 24048575 24048595 AAGGTCAAACGGATTACTCCA 60 NA Rattus norvegicus 81 Vom1r43 ENSRNOG00000032226 ENSRNOT00000048195 1 1 1 60 1 67206128 67206148 TCTCTGATGGACTGTATCTGG 59 67206088 67206109 AGAATACTCACCATGGAAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias2 ENSRNOG00000017493 ENSRNOT00000023886 3 1 1 80 18 73523244 73523267 CACCTTCATTAACAGACTACTCAG 59 73523304 73524870 TTTGTTCTCCTGGCAAATCTG 59 NA Rattus norvegicus 81 Ubox5 ENSRNOG00000021230 ENSRNOT00000028834 2 1 1 81 3 123140407 123141944 AATTCACTGCAACAAGGTGTC 60 123140346 123140366 GCCATGGCTTCTCTTTATGAG 59 NA Rattus norvegicus 81 AABR07068150.2 ENSRNOG00000054416 ENSRNOT00000073128 3 1 1 118 9 85968838 85985259 AGATTCTACTGCAGGTCCAG 59 85968739 85968757 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Olr1240 ENSRNOG00000049725 ENSRNOT00000074752 2 1 1 60 4 1521767 1521787 ATTACTTCTGTGACATCCTCC 57 1521809 1521827 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564379 ENSRNOG00000042501 ENSRNOT00000064861 2 1 1 60 3 3592657 3592676 AGTACAACAACTTCGACGTG 59 3592616 3592634 AGAAAGCGGATAAAGCCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klri2 ENSRNOG00000057643 ENSRNOT00000078642 3 1 1 82 4 163570608 163570629 AACAGGAACTGAAAGTTCACAC 59 163569495 163570565 CAACCAGGGATCTGTTCCT 59 NA Rattus norvegicus 81 Acss2 ENSRNOG00000018755 ENSRNOT00000064013 3 1 1 80 3 151062849 151067982 CCAGATGTCCAGATCTCCT 58 151068026 151068044 CTCAAACTCATCTCCTGCC 58 NA Rattus norvegicus 81 Ctcfl ENSRNOG00000028661 ENSRNOT00000034131 3 1 1 94 3 171160050 171161027 TCAACACCCATACAGGGAC 59 171159974 171159992 TTTGTAACGTCTGTGCCTG 58 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 1 2 2 80 1 214247653 214247674 CCAACAACTCAGAAGAAAGGAC 60 214247714 214247963 GCAGCTTCTTCATGTACTCC 59 NA Rattus norvegicus 81 Olr808 ENSRNOG00000029299 ENSRNOT00000048987 2 1 1 60 4 72273457 72273478 TCTTACATCCAGATCATCTCCA 58 72273498 72273517 CCTTTCTCCTTCCCTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576,ENSRNOT00000013546 2 3 3 81 3 11242357 11242375 GGTCTATGAGGGCCAACTC 60 11242419 11244365 CATAGTTAGCTGTGGGAGCT 59 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000066899 1 1 2 89 10 85629292 85630166 AGAATCAGTCTTCCCTGTGC 60 85630217 85630236 GTTTCTCATCCCAACCACAC 59 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 1 2 2 80 8 14115819 14117152 AGCAAAGCAACAGATCTCAG 59 14115758 14115776 AAGTCTCCCATCATTCCCT 58 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000001075 1 1 3 104 20 40683499 40683517 ACAGGACACCATGGATGTG 60 40683585 40701724 ATCACAGAGTCTTGCTGGG 59 NA InUTR Rattus norvegicus 81 Traf5 ENSRNOG00000047957 ENSRNOT00000071698 2 1 1 80 13 110770637 110771688 AACCTGCAGGATCATGAGG 60 110770575 110770594 TCTCGGAATAGTCTGCACAC 60 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000087346,ENSRNOT00000012340 3 2 2 80 10 86677014 86677033 AAGATCACCCGGAATCAGTG 60 86677075 86677838 GTCTAGAACCAGGTCCATGG 60 NA Rattus norvegicus 81 Ccdc73 ENSRNOG00000022660 ENSRNOT00000041362 1 1 1 80 3 94868982 94869000 TCCAGCTCCTCGATTTCAG 59 94869041 94877622 CATATTGAGTCTCTGCTTCCCT 60 NA Rattus norvegicus 81 Mptx ENSRNOG00000046165 ENSRNOT00000073147 2 1 1 80 13 91773590 91776348 GTATATCACAATCAGACATGGATGG 60 91773534 91773554 GAGGTATCAGGGACACATAGG 59 NA Rattus norvegicus 81 Gatb ENSRNOG00000037655 ENSRNOT00000075823 3 1 1 80 2 184639877 184639898 CCCGTTCATTTGATTATAAGCG 58 184641314 184642995 CCGGCATAAACCTGTAGTC 58 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 1 1 1 80 8 40071261 40071279 AAACCAGCTTTGATCCAGC 59 40069365 40071217 GTTCTGGGTCCTTGAATGC 59 NA Rattus norvegicus 81 Guk1 ENSRNOG00000002928 ENSRNOT00000003926 2 1 1 80 10 45536270 45536288 CCTGGTGATCGTCAATGAC 58 45535933 45536229 TCAGCTTTCTTGATTTCCTCAG 59 NA Rattus norvegicus 81 Peli2 ENSRNOG00000012363 ENSRNOT00000016629 2 1 1 92 15 25075942 25077623 TATATTCCTCGGCGAGAAGG 59 25077678 25077696 CTTGGGTGCATTACCAGGA 60 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629,ENSRNOT00000068177,ENSRNOT00000041994,ENSRNOT00000067886 3 4 4 80 16 23751803 23751821 TGAGAAGAAGCCGAATGTG 58 23751865 23752715 ATTTCCTCTGGACTCTGGG 58 NA Rattus norvegicus 81 LOC100911492 ENSRNOG00000048322 ENSRNOT00000074488 2 1 1 81 15 25504518 25504537 GTACCCAGACATCTTCATGC 59 25502625 25504477 ATTCTTAAACCATACCTGCACC 59 NA Rattus norvegicus 81 Olr709 ENSRNOG00000055123 ENSRNOT00000082898 3 1 1 60 3 78525730 78525748 TCACAGCTTGTATGAGCCA 59 78525688 78525708 ATGACAATCTCAGTACCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 3 2 2 80 X 110733046 110733863 ATCAGAAACACTTCAGAACGC 59 110733901 110733923 CTCCCTCTTTCATGATAATGACC 59 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000086206 3 1 2 86 10 47118015 47128925 GTTGGAATGGTTAGCCTGTC 59 47117948 47117967 ATACTCAAACTGGTCCTGGG 59 NA Rattus norvegicus 81 Zak ENSRNOG00000001515 ENSRNOT00000002068 3 1 1 80 3 59036723 59043305 ATTCCTACGGTGTGGTTCTC 60 59043348 59043366 GCCAAGCGACTTGTAATCC 59 NA Rattus norvegicus 81 Rccd1 ENSRNOG00000042059 ENSRNOT00000029471 2 1 1 86 1 142111268 142111286 TTGGAATGAGTCAGGGCAG 60 142110955 142111220 TCATTCAATTCTGTGGCTTCC 59 NA Rattus norvegicus 81 LOC100911282 ENSRNOG00000047274 ENSRNOT00000060298 1 1 1 80 15 29672358 29672548 AGATTTGCTGGGTGAGAGG 59 29672296 29672315 TCAGAACAGAACTGGTTCCC 60 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000049536 ENSRNOT00000050438 2 1 1 111 12 7186699 7186787 AATTGAAGGTGTTTATGCCCG 60 7186608 7186627 TTTGTTTGGTTTGCCTCCAG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 3 5 6 80 20 3305443 3306024 GATGATGGAAGACAAATCTGACC 60 3306061 3306082 GCACAATGGTCTTCATATCGAC 60 NA InUTR Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000089788,ENSRNOT00000078538 1 4 6 60 20 3306340 3306358 CCATCTTGCTACCTTCCAC 58 3306382 3306400 CTGTGGAGCAGTCATTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard5 ENSRNOG00000025052 ENSRNOT00000015320 3 1 1 80 1 145775001 145775974 ATCAGTTCCAATGCTACCC 57 145776015 145776036 ACATGGATGGTTAAATCCTCTC 58 NA Rattus norvegicus 81 Dram1 ENSRNOG00000038916 ENSRNOT00000059487 3 1 1 80 7 28932447 28932466 AGCCTTCATCATCTCCTACG 59 28921374 28932407 GTTCCTGTGTCACTGATATAGG 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442,ENSRNOT00000007287 2 2 2 81 6 49837023 49837211 CCCTATTATGGCAATGACTCTG 59 49836963 49836981 TGAGTTTCTCCAGGAAGGC 59 NA Rattus norvegicus 81 Cactin ENSRNOG00000039852 ENSRNOT00000027926 1 1 1 80 7 11263779 11263798 GCATGAACCTTACACCTTCC 59 11263591 11263737 TCCATGTACACCTGGATGTC 59 NA Rattus norvegicus 81 Dhx32 ENSRNOG00000018119 ENSRNOT00000024655 2 1 1 80 1 205810527 205816359 TGAAACCATCCTGAGGTACTG 60 205810467 205810485 ACACCATAGCTACCCAGGA 60 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000010746 ENSRNOT00000014493 1 1 1 80 4 147715645 147717114 GTGCAACAAATCTTACTGTGC 59 147715585 147715603 TGTGCTGCTCTTTCTACGA 59 NA Rattus norvegicus 81 Fen1 ENSRNOG00000020531 ENSRNOT00000027842 2 1 1 97 1 226253445 226255660 GTAGGAAGAAGCCATTGCT 58 226253366 226253384 ATGTCATTCTCACGGATGG 57 NA InUTR Rattus norvegicus 81 Fam124b ENSRNOG00000058883 ENSRNOT00000072054 3 1 1 118 9 90788619 90805178 AGATTCTACTGCAGGTCCAG 59 90788520 90788538 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721,ENSRNOT00000048900 1 2 2 80 19 43173798 43174096 AAGAACTTCTGGATTGGGCT 59 43174138 43174157 GGTGAAGGACTTGTGTTCTC 59 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948,ENSRNOT00000044810 2 2 2 80 4 21900687 21900705 GCTGACACTGACCTTAAGC 59 21900744 21901369 TATGGTAGGAGACTCTAAATCCTC 59 NA Rattus norvegicus 81 Olr27 ENSRNOG00000050559 ENSRNOT00000044676 2 1 1 60 1 150172920 150172940 CTCCTCTACATTATGAAGCCA 57 150172880 150172899 GAAACACCTAACATCAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029925.1 ENSRNOG00000052636 ENSRNOT00000085543 1 1 1 80 10 60231165 60235662 ATCCTCATTCTATTGGACTCCC 59 60235702 60235721 AAAGCAGAGGTCAGAGAAGG 60 NA Rattus norvegicus 81 Psmc3 ENSRNOG00000011414 ENSRNOT00000015757 1 1 1 80 3 79877525 79877543 AGGTGCTCAAGATGTCCAC 60 79877581 79877906 CTTCACTCTTCATGATCTTGATCTC 60 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 3 1 1 80 8 12329505 12330998 ACAAGACAGTTCCCTACCG 59 12331039 12331060 AAATAGACAGCTGTACAAGTGG 59 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000049438 ENSRNOT00000072853 3 1 1 60 3 75167693 75167711 GTTGCCATCAAACACAGGA 59 75167651 75167673 AACTATAAGGTGGGAAGAACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 3 2 2 80 6 126271365 126271384 CTGAGATGCTCCTCAATGTG 59 126271425 126276364 TCAGATAGTAGGAACCCTCTC 58 NA Rattus norvegicus 81 Mir3102 ENSRNOG00000049574 ENSRNOT00000074461 3 1 1 64 1 165921237 165921256 ATCTATTGCGGGCTCTACTC 59 165921192 165921210 CTGTGTACCTGTGGGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000071104 3 1 2 80 12 35971497 35971518 ACACCCTTAGACATTTATGAGC 58 35971436 35971458 TGGTTGGATGAACCAATTCTC 59 NA Rattus norvegicus 81 N4bp2l1 ENSRNOG00000059322 ENSRNOT00000085295 1 1 1 80 12 548336 549518 GAGTTAGCAAGAAGAAACATCC 58 548277 548297 GGTAACATTGTGTTCATACCG 57 NA Rattus norvegicus 81 Adamts3 ENSRNOG00000027463 ENSRNOT00000060465 1 1 1 80 14 20043442 20043465 CGATAACCCATACTTCTGTAAGAC 59 20043503 20045740 TTATAGCACCACTTCCCAGC 60 NA Rattus norvegicus 81 Adamts3 ENSRNOG00000027463 ENSRNOT00000060465 2 1 1 80 14 20037549 20037568 TATCACGATGAGTCCCTTGG 59 20037609 20039447 GCTGATAGACTTTGCGTAACC 60 NA Rattus norvegicus 81 LOC679149 ENSRNOG00000048039 ENSRNOT00000074240 1 1 1 80 19 1645 2115 CTGGCTATTAACAAGGTTGTG 57 1585 1603 CAACAACTCTTTGGGATGC 57 NA Rattus norvegicus 81 Ppp1r37 ENSRNOG00000017692 ENSRNOT00000023867 1 1 1 80 1 80444142 80444553 TTGGATGAAGATGGTGCCT 59 80444080 80444101 GTTGAAAGAGATGTTGAGGTGG 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428,ENSRNOT00000065187 2 2 2 81 1 199198674 199198697 GAGGAGAAATTTAGTTTGAGCCTC 60 199198737 199198886 CCTTTCCCATCTTCAGGCA 60 NA Rattus norvegicus 81 Nqo1 ENSRNOG00000012772 ENSRNOT00000017174 1 1 1 80 19 38431938 38431956 GAGAGTGCTTGTAGCAGGA 59 38431997 38433637 AGCAAGGTCTTCTTATTCTGGA 59 NA Rattus norvegicus 81 Emc8 ENSRNOG00000017654 ENSRNOT00000023855 3 1 1 81 19 54238987 54245487 CGCTCACCCTAATTGACTC 58 54238924 54238943 TCCTTCACACGTTCATTAGC 58 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504,ENSRNOT00000077163 1 2 2 80 8 71001649 71001667 CAGTGGAACTGCAGATGTG 59 71001708 71006488 GGATACTGCAAAGCTATAACCC 59 NA Rattus norvegicus 81 Chrac1 ENSRNOG00000009103 ENSRNOT00000012121 2 1 1 80 7 114323636 114323654 TGAAGAGCTCTCCTGAGGT 60 114323698 114325726 ACTGAACAAAGAGCTCCGT 59 NA Rattus norvegicus 81 Cyp51 ENSRNOG00000007234 ENSRNOT00000009985 2 1 1 80 4 27180745 27181765 AGAAAGCGGAGAAAGAAATGTG 60 27181804 27181824 TCCTTTCCATGTAAGCAATGG 59 NA Rattus norvegicus 81 Vcp ENSRNOG00000034242 ENSRNOT00000046102 1 1 1 80 5 58431352 58431372 GGACGTTTGGAAATTCTTCAG 58 58430812 58431310 CTCATTGGCTACCTGTTCC 58 NA Rattus norvegicus 81 AABR07017831.1 ENSRNOG00000046976 ENSRNOT00000072332 3 1 1 63 15 31618325 31618343 CTTTCAGCTCCATTTGCCT 58 31618553 31618571 ATTGAAGCCTGAGTTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000087323,ENSRNOT00000036483,ENSRNOT00000084058 2 4 4 80 13 79746507 79751858 ATAGCAGAAGAGCAGGATCAG 60 79746447 79746468 AACAATCTGTGTCATGTTGGTC 60 NA Rattus norvegicus 81 LOC100362350 ENSRNOG00000007758 ENSRNOT00000029039 1 1 1 80 13 110640451 110640469 AGTTGCATTGTTTGGAGGA 58 110637164 110640407 CGAATCTCACGTCTTAGCA 57 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000021918,ENSRNOT00000090779 2 2 2 81 17 78826764 78829139 AAACAAGTTGCCATGGTAGAC 59 78829177 78829200 AGTAGTAGAAAGTATTGTCCCTCC 59 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 3 1 1 80 13 93703304 93703323 TATGCCATGGAACCTAACTG 57 93703366 93704203 AGATTTGTCCATGTTCGGT 57 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049,ENSRNOT00000046229 1 2 3 80 9 81628658 81628676 CTACCTCATCATCGACACC 57 81628720 81629739 TCAATAGAAGCCTGCACAG 58 NA Rattus norvegicus 81 Ankrd11 ENSRNOG00000027906 ENSRNOT00000031389 3 1 1 80 19 55716826 55717286 AAAGCTCTACTGAGAGCTCTG 59 55716766 55716786 AGTCTGTGTTATTGCCATCGA 60 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899,ENSRNOT00000018393 3 2 2 80 5 160397234 160397252 ACTGGTGGTTCATCAAGGT 59 160395330 160397190 CAGAATCTCCGTTACAGGC 58 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 2 2 2 80 17 81995430 81995451 CAGGAGGAAATTCATCATCCAG 59 81995489 81999510 TGTCTATAGCAGATGATGGAGG 59 NA Rattus norvegicus 81 Lama4 ENSRNOG00000000599 ENSRNOT00000000737 1 1 1 80 20 44153079 44154108 ATTTATGACGCCGTGAGTG 58 44154151 44154170 TCTGGCTTGATTGAGAAGGT 59 NA Rattus norvegicus 81 AABR07017841.1 ENSRNOG00000048670 ENSRNOT00000072744 2 1 1 63 15 31770000 31770018 CTTTCAGCTCCATTTGCCT 58 31770227 31770246 ATTGAAGCCTGAGTTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Fam155b ENSRNOG00000038066 ENSRNOT00000057920 3 1 1 81 X 69601807 69602216 TTTATCTGCACAGGATTGATCG 59 69602258 69602276 ACTCACAAGAGACCCACTG 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 2 2 2 80 3 100389875 100389894 TAATTGGCTACATCGAGTGG 58 100389935 100393602 AGATCTTTATTGAGTCCCTCG 57 NA Rattus norvegicus 81 Clca1 ENSRNOG00000060831 ENSRNOT00000084996 2 1 1 81 2 250923585 250923604 TATGAAGGCATCGTCATTGC 59 250918693 250923543 GAGTCACCATGTCCTTTATCC 58 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000079763,ENSRNOT00000005467 3 2 2 80 13 94852024 94852042 GGGAAAGAGCAGAAGAGGA 59 94847322 94851982 CATGTTTGTTTCCTTTCAGCC 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 3 2 2 80 3 60086734 60088293 CTGGTCTCCTTGATCTGGT 58 60086672 60086691 GTTAGCTGTGAGCATGTGAG 59 NA Rattus norvegicus 81 LOC681182 ENSRNOG00000047077 ENSRNOT00000068118 3 1 1 81 12 20883362 20885754 GTTACACATGATCTCAGTACGAC 59 20885795 20885813 TTATGTTCTCCAGGCCAGC 60 NA Rattus norvegicus 81 Rn60_X_0740.1 ENSRNOG00000051267 ENSRNOT00000076553 3 1 1 60 X 73140984 73141002 ACTGATCCAGACAGACAGC 59 73141023 73141044 GTTTCTTCCGTACTTTGTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gid8 ENSRNOG00000010180 ENSRNOT00000013609 1 1 1 80 3 176219830 176221044 AACTACTTAGTCACAGAGGGC 59 176221086 176221104 TAGGTCCACACTTGGTTCG 59 NA Rattus norvegicus 81 Mir6322 ENSRNOG00000047842 ENSRNOT00000072595 1 1 1 60 12 26825108 26825127 CTGTACGCATCTTTCCTGTC 59 26825067 26825085 AGGAAGACAGAGACCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pih1d3 ENSRNOG00000054900 ENSRNOT00000087634 3 1 1 80 X 111402839 111402857 GGAATCCAGAAGAGGTTCC 57 111402898 111410403 ACACAATCTCATAATCTGGGAC 58 NA Rattus norvegicus 81 Dpp3 ENSRNOG00000031485 ENSRNOT00000026968 2 1 1 80 1 220178887 220182558 CAACACAGAACCTGCTCTC 59 220178825 220178844 GTGACCTGGAAATGATTCCC 59 NA Rattus norvegicus 81 Ptprz1 ENSRNOG00000006030 ENSRNOT00000008719 3 1 1 80 4 50138416 50139833 CACTGACATTGAGCAGTACC 59 50139875 50139894 GTGGATGGATTCTCTTCCTG 58 NA Rattus norvegicus 81 Sult1b1 ENSRNOG00000001967 ENSRNOT00000002699 1 1 1 80 14 22143138 22146484 CAAGAAGATCAGGTGTTGAACTC 60 22146519 22146542 GGAGTAGATCAATTGGAAGATGTG 59 NA Rattus norvegicus 81 Tmprss6 ENSRNOG00000000184 ENSRNOT00000000200 1 1 1 80 7 119679922 119680631 AAAGCCCAGAAGATGTTCC 58 119679860 119679878 AAAGGCGTAGATGGAACTG 58 NA Rattus norvegicus 81 Map3k19 ENSRNOG00000003952 ENSRNOT00000005244 1 1 1 80 13 44540085 44540104 CTATAGCTGCAGTCAGGGAG 60 44538945 44540045 TGTCAGAGGTAGGAAACTTGTC 60 NA Rattus norvegicus 81 Dcaf12l1 ENSRNOG00000023458 ENSRNOT00000038653 1 1 1 80 X 131342311 131342518 TTTCCCTCTATGCTGTGGG 59 131342249 131342267 ACAGTGGAGGGATGTTCTG 59 NA Rattus norvegicus 81 Olr1635 ENSRNOG00000031108 ENSRNOT00000040096 3 1 1 60 15 27549275 27549299 GACTAGGAGACTTTGTTGTATTCTG 59 27549239 27549259 GTAGCCAAGGAATCCAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692,ENSRNOT00000082967 2 2 2 80 X 71568344 71568760 GCTCATTGCCTACAGATTGTC 60 71568799 71568820 CTGCTCAGCTACAATACTAACC 59 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 3 2 2 86 12 22113071 22116200 GCAGAATGGTTCTTCCTTTGG 60 22116248 22116266 GGATTGGTGGAGATCCCAG 60 NA Rattus norvegicus 81 Gpc4 ENSRNOG00000002413 ENSRNOT00000003282 1 1 1 80 X 139359791 139359813 CTCGATTCAGACCTTATCATCCA 60 139356027 139359752 TGACATCAGTAACCAGTCGG 60 NA Rattus norvegicus 81 Syde2 ENSRNOG00000026186 ENSRNOT00000036282 3 1 1 80 2 251863713 251863731 TTTGGGCAGTTGGAAAGTG 59 251863773 251872599 AATAAGTCTGCTGTCAGTGTG 58 NA Rattus norvegicus 81 AABR07061345.3 ENSRNOG00000057968 ENSRNOT00000080096 2 1 1 60 4 117751150 117751168 CCTAGTGTCTGGTTCTTGG 57 117751108 117751126 CAGGCAAAGGAGAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368,ENSRNOT00000026587 2 2 2 80 1 199394995 199395336 GTAGTCCTGGTGGTCAGTC 59 199394636 199394657 TAGGTCTTCGAATTCTCCTTGG 60 NA Rattus norvegicus 81 LOC102549447 ENSRNOG00000029567 ENSRNOT00000041894 1 1 1 80 8 107259075 107259093 CACCTACCAGTGCAAAGTG 59 107256491 107259036 CTCCCAGTGATATCAATAACTGTC 59 NA Rattus norvegicus 81 Grap ENSRNOG00000002599 ENSRNOT00000003515 2 1 1 80 10 47930709 47930727 GCCCTCTACAACTTCCAGG 60 47930767 47938080 GTCCATGTTTAGGATCTTAAGCG 60 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 1 2 2 88 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425221 159425239 ATACCTAAGCACCGACTGC 60 NA Rattus norvegicus 81 Rhox3 ENSRNOG00000040010 ENSRNOT00000041904 2 1 1 81 X 124575549 124575567 GCTTCCTCAGTGTAGAAGC 58 124572151 124573499 TTCCGAAACCATCTCTTCAC 58 NA Rattus norvegicus 81 Olr697 ENSRNOG00000029675 ENSRNOT00000046271 2 1 1 60 3 78216111 78216129 TTCTACTGCCATTGCTCCC 60 78216069 78216092 GGAGATGGTCTTTGTTTCATAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036698.1 ENSRNOG00000046702 ENSRNOT00000075665 3 1 1 81 X 586450 586468 CAAAGCTGACCAAATGGCA 59 586513 587156 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Smad7 ENSRNOG00000018359 ENSRNOT00000024831 2 1 1 96 18 71397850 71399215 GACTCTGTGAACTAGAGTCTCC 59 71404512 71404530 GAGGAAGGTACAGCGTCTG 60 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 3 1 4 80 9 81575706 81575841 CTTCACCTTTGTGGAACCAG 59 81575645 81575663 GCACCCTGTACTCACTAGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000086146 1 1 4 80 9 81579494 81579689 TACCAAAGACTCAGGACTCTC 59 81579434 81579452 GCAGCAGGGTAAATGACAC 59 NA Rattus norvegicus 81 Mir872 ENSRNOG00000041219 ENSRNOT00000062972 3 1 1 62 5 113657740 113657761 GTTACTTGTTAGTTCAGGACCT 58 113657784 113657802 CAGTTAGGAGGCTACTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etnk1 ENSRNOG00000014856 ENSRNOT00000020042 2 1 1 80 4 177436355 177441616 GTTTGCACTGGCTTCTCAC 60 177441660 177441678 AGGAAGTCGAACTCGATCG 59 NA Rattus norvegicus 81 Serpina1f ENSRNOG00000037762 ENSRNOT00000057322 3 1 1 89 6 127566067 127566902 GACGACAATCTAATCTAAGGATGG 59 127566001 127566022 GTAGGTTCATCATTGACTCCAC 59 NA Rattus norvegicus 81 P2ry2 ENSRNOG00000019283 ENSRNOT00000026115 1 1 1 90 1 166037229 166037247 ATCCTCGTCACACCAAGAG 59 166032747 166032765 CTATTCCAGGAGTCCAGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lbhd1 ENSRNOG00000019701 ENSRNOT00000039991 3 1 1 96 1 225085670 225086652 CTCAAGAAACGTGCATCCA 59 225086712 225086730 TTTCTTTCTGGGCAAGTCG 58 NA Rattus norvegicus 81 Pex3 ENSRNOG00000015660 ENSRNOT00000021524 3 1 1 80 1 7698530 7698550 CTTCTAGACAATATGGCGGAG 58 7688845 7698490 ACTGGACAGACTGTTTATGGA 59 NA Rattus norvegicus 81 Kif4a ENSRNOG00000038035 ENSRNOT00000078233 3 1 1 80 X 70473954 70476565 GCATAAAGATTGTGGGACTGAC 60 70476604 70476624 AGTTGTTACCCTGCTCTAGAC 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000082009 1 1 3 96 4 158637985 158673272 CTTCCTGAAGATCTTACAGGTG 58 158637910 158637928 ATCCATGTTGTTGCCTTGG 59 NA Rattus norvegicus 81 Txlna ENSRNOG00000048242 ENSRNOT00000072165 1 1 1 80 5 147844371 147844389 AAGTGACGAGGTTGGAGAC 59 147841838 147844330 AAAGTGATCTCCTTCCCTAGAC 59 NA Rattus norvegicus 81 Csn2 ENSRNOG00000039326 ENSRNOT00000060265 3 1 1 84 14 21974769 21974787 GCATTCACTGTGTCCTCTG 59 21975921 21976031 GTTTCACCTTCTGAAGTTTCTC 58 NA Rattus norvegicus 81 AABR07021846.1 ENSRNOG00000057677 ENSRNOT00000072611 2 1 1 60 13 95416344 95416363 CTGAAGACGATCAGACAAGG 58 95416386 95416404 AAGCTGGACAGTTGTTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnd2 ENSRNOG00000057710 ENSRNOT00000086440 1 1 1 80 4 159697069 159697087 TCCTATTTCAAGTGCGTGC 59 159695341 159697026 CTCACAGACCTCTAGCATCC 59 NA Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 2 2 2 61 1 79899814 79899834 CAACGGTATGTGTTGTCAGAG 59 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 MGC108823 ENSRNOG00000019542 ENSRNOT00000050063 2 1 1 81 18 55576276 55576295 GAGAGCTAGAGGGCTATTCC 59 55576336 55583482 CTTCAAGCAAATAAAGCCACAG 59 NA InUTR Rattus norvegicus 81 Olr1595 ENSRNOG00000022329 ENSRNOT00000004677 1 1 1 60 13 92241536 92241555 AATCCCTAAGATGCTCTCCA 58 92241575 92241596 GCAGCCAATGAAAGAAATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csf2rb ENSRNOG00000000187 ENSRNOT00000000203 2 1 1 80 7 119565577 119565595 CCTCATCCTGGTCTTCCTC 59 119565638 119565859 TTTCTGTACAACTTGCACCC 59 NA Rattus norvegicus 81 LOC103690015 ENSRNOG00000033146 ENSRNOT00000049028 1 1 1 60 1 77541470 77541488 GTGGACACAGTCAAGTTGG 59 77541509 77541530 AGAGCCAGTTCTCATCATATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vgll4 ENSRNOG00000007822 ENSRNOT00000010338 3 1 1 89 4 146839024 146839045 GCTGTTTATGAAGATGGACCTG 60 146806750 146838976 GAAGCTTCACCTTCATAGCAC 59 NA Rattus norvegicus 81 Ush2a ENSRNOG00000003738 ENSRNOT00000004992 1 1 1 80 13 107008736 107010363 TGAGCAGTACACAGACTCC 59 107010407 107010425 AGCCCACCTACAAACAGTC 60 NA Rattus norvegicus 81 LOC100361103 ENSRNOG00000033855 ENSRNOT00000042619 2 1 1 60 4 178617685 178617704 CATCAAGCACTCAAAGAGCA 59 178617725 178617745 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etfb ENSRNOG00000017851 ENSRNOT00000024083 1 1 1 80 1 98478771 98478792 GACTAAAGGAGAAGAAGCTGGT 60 98478323 98478730 CAGTTCGGATGGTCTCCTG 60 NA Rattus norvegicus 81 Srrd ENSRNOG00000000662 ENSRNOT00000000826 2 1 1 80 12 50319373 50320394 GAGAATGAGGAAGGCAAGC 59 50320437 50320456 GTTGTATAGAGCTGTCCCAC 58 NA Rattus norvegicus 81 Efcab7 ENSRNOG00000009782 ENSRNOT00000013089 3 1 1 80 5 118690289 118696391 CAAACTTAAAGGATTGGCAGTG 59 118696430 118696450 ACTGATGACTGACAACTTCAC 58 NA Rattus norvegicus 81 Dnase1 ENSRNOG00000006873 ENSRNOT00000009283 3 1 1 80 10 11758783 11759121 CCATACACTGAGGTCCGAG 59 11758721 11758739 GAGGGCATCGATCTCACTC 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692,ENSRNOT00000082289,ENSRNOT00000086856 1 3 4 80 1 102826910 102826928 CCTTCAACATTCCACTGCC 59 102825106 102826868 CAAAGCTAGAAACACTGTCCT 58 NA Rattus norvegicus 81 Tspan12 ENSRNOG00000059016 ENSRNOT00000083938 1 1 1 80 4 48879809 48879828 TGACAAATTACGGCTTACCC 58 48874317 48879766 CTCCGCAGCACTTAAACTC 59 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 3 2 2 80 8 71490062 71492290 TATCACAGCAGACTAGATGAGAC 59 71490004 71490024 AGATCTATCAGACGTGACCAG 59 NA Rattus norvegicus 81 Bmp8a ENSRNOG00000030155 ENSRNOT00000045922 2 1 1 83 5 141019931 141033085 CTTCGTCAACATGGTGGAG 59 141019866 141019886 ATCTGGGTTAAGTCAAAGTGG 58 NA Rattus norvegicus 81 Tmprss11d ENSRNOG00000055991 ENSRNOT00000088552 2 1 1 80 14 23378818 23387265 TTCAGAAGCTACTCGAATCCT 59 23387303 23387325 TACTCTCACTCTTAACCTAGGAC 58 NA Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 1 1 1 80 5 159467981 159467999 GACATCATTGACCTGCCTG 59 159468042 159468433 CATGTTCACCATGTTAGGGA 58 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 1 2 2 80 8 104152436 104152455 TGAAGTAGCTGATGAACTGG 57 104152496 104154705 TTCTTCTGATCATAAGCCGAG 58 NA Rattus norvegicus 81 Fam133b ENSRNOG00000009163 ENSRNOT00000012253 2 1 1 91 4 27730129 27732645 AGAGAACAACAGACAAAGCT 57 27730057 27730075 CGAGTCTGAGCTTGAACTG 58 NA Rattus norvegicus 81 AABR07017714.1 ENSRNOG00000046417 ENSRNOT00000071631 2 1 1 69 15 30323788 30323806 TTACTCCTAGGCCTTCACC 58 30323599 30323617 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910824 ENSRNOG00000047036 ENSRNOT00000073693 2 1 1 60 13 100214749 100214769 ATCAGCAAAGAACAACAGTGG 60 100214790 100214809 CCAGTGTCATCTCAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc30a1 ENSRNOG00000052519 ENSRNOT00000013565 3 1 1 60 3 62801400 62801419 TACGGTCACTTATGAGTCCA 58 62801359 62801378 ATTCCACCCTATGATCTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000088553,ENSRNOT00000010243 2 2 2 80 8 2682193 2682213 TTCTAACTGTCCGAGTCTGAG 59 2682251 2682966 CAAATAGTACCAGTATGTCTGCC 59 NA Rattus norvegicus 81 AABR07003230.1 ENSRNOG00000049445 ENSRNOT00000072699 3 1 1 80 1 99399355 99399476 GTCACAAGTCACAAGTGAGAC 59 99399518 99399536 CCTTGTTGCAAGATGCCTC 60 NA Rattus norvegicus 81 Sstr3 ENSRNOG00000007332 ENSRNOT00000009612 2 1 1 113 7 119767364 119767382 AGATGCAAGCTACCCATGG 60 119764136 119767288 CAACTAGCCCAAACCTTACG 59 NA InUTR Rattus norvegicus 81 Olr427 ENSRNOG00000031763 ENSRNOT00000047764 1 1 1 60 3 21209447 21209468 ATCCTTTCATCTATAGCCTGAG 57 21209488 21209507 TCCCTTAACTTCCTCAAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamtsl2 ENSRNOG00000027742 ENSRNOT00000036995 1 1 1 80 3 5628800 5628818 TGTGTCTCCTTCAACTCCC 59 5628861 5629552 GATGTGCATGTAGTCATCCG 59 NA Rattus norvegicus 81 Eif3f ENSRNOG00000015221 ENSRNOT00000021017 2 1 1 80 1 173541127 173541584 CAACATCAACGACCTGCTG 60 173541625 173541646 TTTACAAGTTTCTCGTTGAGGG 59 NA Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 1 1 1 63 X 74171844 74171862 AGAGCTGGCAGTTAACCTG 60 74172982 74173000 TCTGCGATTCTGAAACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Serpina9 ENSRNOG00000042391 ENSRNOT00000012861 1 1 1 89 6 127663365 127664328 GGTTTCTAAGGCTGCTCAC 59 127663294 127663314 CGGACTATTAGTTTGGTGGTG 59 NA Rattus norvegicus 81 AABR07002768.1 ENSRNOG00000055096 ENSRNOT00000081294 1 1 1 72 1 83818447 83818465 AACAGTGATGCTGAAGCAC 59 83818392 83818410 TGTCCTTCTGAGGCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hpse2 ENSRNOG00000043120 ENSRNOT00000067274 2 1 1 112 1 262040931 262047196 GTACAAACCACCACAACCAC 60 262040838 262040856 GAGCTTGTCCCTGAGAGTC 60 NA Rattus norvegicus 81 Ttll3 ENSRNOG00000009032 ENSRNOT00000012015 1 1 1 80 4 145350847 145351720 CAAGAAAGCCTTCATAGCAGAG 60 145351761 145351779 CTCCCTTCCAACTTCACCA 59 NA Rattus norvegicus 81 Ttll3 ENSRNOG00000009032 ENSRNOT00000012015 2 1 1 80 4 145351812 145353286 AAGAGGCCCTAGAAGATACAC 59 145353328 145353346 GAGCCTCATCCACAAAGTC 58 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 2 2 2 80 7 120214409 120214721 CTTCCAGATCCATACCAAGGA 59 120214763 120214781 AGAGCCTCAATCCAGTTCC 59 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 2 2 2 80 1 164301988 164302532 ATGACCTGCAGAAACATCTG 58 164301927 164301945 CAGACATGCGCGATAAGTC 59 NA Rattus norvegicus 81 Chst4 ENSRNOG00000016953 ENSRNOT00000022749 3 1 1 100 19 41631797 41638248 TCAGAATATCGGGATGATGCT 59 41638310 41638328 TATGACCGGACATGTGGAC 59 NA InUTR Rattus norvegicus 81 Aimp2 ENSRNOG00000001044 ENSRNOT00000001379 3 1 1 87 12 12744533 12746415 GTGCTTGGAAAGGATTATGGG 59 12746463 12746482 TATGTAGCACAAGCAGGGAC 60 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 1 1 1 80 8 12357787 12358823 GTTTGGAACACCTAAGCCT 58 12358865 12358885 GAATTTGTACAACGCTGACAC 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 2 2 2 80 10 11856988 11861850 GAACGGTTTGAAGAAGCTGAG 60 11856928 11856948 ACTCTTGAGCAGTCTCTTCTC 59 NA Rattus norvegicus 81 AABR07017838.1 ENSRNOG00000048203 ENSRNOT00000072127 2 1 1 96 15 31719898 31720034 GCTCCTCATCCTCACAAGG 60 31720088 31720112 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Ndufa9 ENSRNOG00000061684 ENSRNOT00000089193 1 1 1 80 4 159393342 159395475 GCTTATCTTTCTGGAGTGGG 58 159393281 159393300 AGATTGATGACCACATTGCT 58 NA Rattus norvegicus 81 Ncl ENSRNOG00000018273 ENSRNOT00000024712 1 1 1 80 9 93376494 93376514 AGGTGGAAGAAGATAGTGAGG 59 93375241 93376452 GAGGGATGACAACCTCCTC 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392,ENSRNOT00000079836 1 2 2 80 12 12774013 12776137 GTCCGTCAGGATCCTTGTC 60 12772487 12772506 TGAAGTCTGTGCTTCGAGAG 60 NA Rattus norvegicus 81 Trpt1 ENSRNOG00000023023 ENSRNOT00000031458 2 1 1 80 1 222253325 222253432 CACTCCCTACAAGTCCCTG 59 222253475 222253494 TGTACCATGGACTAGTGTCG 59 NA Rattus norvegicus 81 Spdl1 ENSRNOG00000007292 ENSRNOT00000009648 3 1 1 80 10 19646653 19650476 CCACAGCTGAGAATTATAACCA 58 19646594 19646612 TCAGACTCTCCAACATCCG 59 NA Rattus norvegicus 81 Uxt ENSRNOG00000009893 ENSRNOT00000013476 1 1 1 80 X 1277374 1277394 CGAGACAAGGTATATGAGCAG 58 1277434 1277591 CGAGTGATTAGTTTCCTGGAG 58 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 3 1 1 101 12 13354975 13354993 CTTTGGAGGAGTGGGAGAG 59 13355058 13355502 GGATTGGGTATCCCAAGGA 59 NA Rattus norvegicus 81 Mst1r ENSRNOG00000032618 ENSRNOT00000066104 1 1 1 80 8 116692183 116692556 TGAGATCACTGAGTTCCATCC 59 116692598 116692616 AGGTAGAAGTTGGAGCCAC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000073636 2 1 8 165 3 100788154 100788172 TTTGATGAGACCGGGTTCC 60 100788301 100815574 TTCTCACCTGGTGGAACTC 59 NA Rattus norvegicus 81 Spata1 ENSRNOG00000015678 ENSRNOT00000021063 1 1 1 80 2 252336191 252341274 AATCACGAAGAAGCTGAGG 58 252336129 252336148 TGACTCTTCCAATGATCCTG 57 NA Rattus norvegicus 81 Hrct1 ENSRNOG00000039336 ENSRNOT00000060282 1 1 1 60 5 59228346 59228364 CGGCCTAGACTCTTCTACG 59 59228388 59228406 GATGGTGATGGTGAACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttnbp2 ENSRNOG00000061845 ENSRNOT00000087167 3 1 1 80 4 42951286 42957326 AGTCAGCAAGTTCAGAGGT 59 42951224 42951244 CTCCAGACAGAGATAACCCAG 59 NA Rattus norvegicus 81 Aplnr ENSRNOG00000009227 ENSRNOT00000012379 3 1 1 60 3 72541596 72541615 GTGACTTTGACAGCTTCCTC 59 72541638 72541656 TTGACGTAACTGATGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr693 ENSRNOG00000006408 ENSRNOT00000008384 3 1 1 60 3 78105497 78105515 TGCTACCATTGTTGAACCA 57 78105455 78105476 TACTTCTGCATTCCTCAAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igj ENSRNOG00000003666 ENSRNOT00000004866 3 1 1 80 14 21178886 21182302 GGAGTATCCGAATTGTTGTCC 59 21182342 21182362 ACACAAAGTTCGTTCTCACTG 59 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000052376 1 1 2 65 1 89953328 89953346 TCAAGCAATGTGTCGACAG 59 89953375 89954142 TTTCGACCAAACTGGTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 1 2 2 80 4 22536906 22536924 AGGGAGAAGGATTGGATGG 59 22536968 22553080 TGCTGTCAGAACTTTGCTC 58 NA Rattus norvegicus 81 AABR07049184.1 ENSRNOG00000046140 ENSRNOT00000071169 2 1 1 98 5 108935617 108935638 TGGTGATAATCTAGTTGCTCTC 58 108935696 108935754 GTGTAGTAGGCGTAATGGTC 58 NA Rattus norvegicus 81 Olr441 ENSRNOG00000034115 ENSRNOT00000048581 2 1 1 60 3 72808083 72808101 ACCAGTGACTGTTACCTCC 59 72808041 72808061 GCTTACAGATTGCCACATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabrb2 ENSRNOG00000003680 ENSRNOT00000004970 3 1 1 80 10 28154991 28155011 TCTGATTACCATCCTCTCCTG 59 28155050 28158451 GTTGTAATTCCTAATGCAACCC 58 NA Rattus norvegicus 81 RGD1565222 ENSRNOG00000013317 ENSRNOT00000017857 2 1 1 83 15 33236151 33240018 GATGCTAAACCCAATGGCG 60 33236086 33236104 TGTTTGGCATAAGCAGGGA 60 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 3 2 2 80 3 8974203 8974224 CAGTGGTGAACTTCTTAAAGTC 57 8973957 8974162 CATCCAGCTCGAAGAACTG 58 NA Rattus norvegicus 81 Mapk7 ENSRNOG00000002412 ENSRNOT00000057864 3 1 1 81 10 47772801 47772820 AAACACGACAATATCATCGC 57 47771461 47772758 GTACCACGTAGACAGATCTG 57 NA Rattus norvegicus 81 Abo2 ENSRNOG00000045801 ENSRNOT00000061276 2 1 1 83 3 5389255 5389757 TACTGACACCCACTAGGAC 58 5389190 5389208 TGTCAATGTTGAAGGTCCC 58 NA Rattus norvegicus 81 LOC689396 ENSRNOG00000032418 ENSRNOT00000041429 1 1 1 81 X 151745543 151752813 CAATGGACAGATATGACTATGTGG 59 151752853 151752871 ACAGGCATCTGTCCTTCTG 59 NA InUTR Rattus norvegicus 81 Ddx49 ENSRNOG00000022368 ENSRNOT00000004891 3 1 1 80 16 20880763 20880864 CAGGGAGTGTGAAATCAAACTG 60 20880904 20880923 TCCAGGATCATCTGTTTCCG 60 NA Rattus norvegicus 81 AABR07017768.2 ENSRNOG00000046943 ENSRNOT00000073533 1 1 1 60 15 30827327 30827439 GGGATAAACTTTCTCCTGAGAG 58 30827459 30827478 CACGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017768.2 ENSRNOG00000046943 ENSRNOT00000073533 2 1 1 61 15 30827327 30827439 GGGATAAACTTTCTCCTGAGAG 58 30827461 30827479 ACACGAACATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000078758 2 1 12 60 20 3359994 3360013 TTGTCCATCTCGTCTAGAGG 58 3360036 3360054 CAGTGGAATAGTCCCAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgb4 ENSRNOG00000032889 ENSRNOT00000044868 2 1 1 60 5 146445643 146445664 ATTATGCGAGCAAAGTACTTCC 59 146445604 146445622 TACTGTTCTGGCATTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkrip1 ENSRNOG00000001426 ENSRNOT00000001937 2 1 1 100 12 23516306 23518971 AGATGTCATGGGTTCCAGTG 60 23519034 23519052 TGGCATCCATGTAGTCCTG 59 NA Rattus norvegicus 81 Rgs10 ENSRNOG00000042592 ENSRNOT00000027375 3 1 1 80 1 199794540 199807648 GACAAGAAGCAGATGCAGG 59 199794478 199794498 CACATTGACTTGTGAAGAGGC 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000075982 2 2 4 91 2 208571852 208573666 GTGTAACAGGACCCTACGT 59 208571779 208571797 GGTAGAGAAGGTCTCTGGG 58 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075932 3 1 4 100 2 208577002 208577020 ATCTTCGCAGACAATGCTG 59 208576670 208576688 GTGACACTTACCCTGGACC 60 NA DesignNoJunction Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754,ENSRNOT00000042372 2 2 2 80 10 104726561 104726579 AGTCTGGCCAACTATGGTG 59 104726386 104726517 TCTACCAATCTGGCTGCAC 60 NA Rattus norvegicus 81 Kir3dl1 ENSRNOG00000027843 ENSRNOT00000039823 1 1 1 80 1 73308965 73314232 CTTCCTGCCAAAGATAACCTC 59 73308905 73308923 GATGACGACGATGACAAGG 58 NA Rattus norvegicus 81 Ube2q1 ENSRNOG00000020791 ENSRNOT00000028210 1 1 1 80 2 189109781 189111870 GAGATGCCCGAGGATACAG 59 189111913 189111932 ATCTTCAGACTTCTTGCCCT 59 NA Rattus norvegicus 81 Vom1r78 ENSRNOG00000057171 ENSRNOT00000080536 1 1 1 60 4 87943424 87943442 CTGTACCACCTACCTCCTG 59 87943466 87943484 CAACGAAGTTCTGGGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morc4 ENSRNOG00000060846 ENSRNOT00000089115 3 1 1 80 X 111178568 111178587 AGACCTGATGTCTCAGTTCG 59 111176882 111178528 TCTTTGTTTCTCCGGATATTCC 58 NA Rattus norvegicus 81 Comtd1 ENSRNOG00000013968 ENSRNOT00000018897 3 1 1 80 15 2632584 2632746 TGCAGACTTTGGATGAGCT 59 2632790 2632808 AGTTCTCCTTGTCTGCGTC 60 NA Rattus norvegicus 81 Gkn2 ENSRNOG00000009256 ENSRNOT00000067651 1 1 1 80 4 119175297 119175949 AGAAGCAGACAATGAATGCC 59 119175988 119176010 CCTTTGTGATCAGAGACTTTAGG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000044591,ENSRNOT00000002496 3 3 3 80 11 80933912 80933930 ACAGTTTGTACACCGAAGG 58 80932607 80933870 GTTTCTGATACCACTTTGGGA 58 NA Rattus norvegicus 81 Cops8 ENSRNOG00000019635 ENSRNOT00000026581 3 1 1 80 9 97775550 97779014 TGGAAGCCCTTAGAGATGC 59 97779057 97779076 AGTCGTCTGCGATTATGGAG 60 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 3 1 1 100 7 74327028 74327048 GAGAAACCCAAACCTGTAGGA 60 74326945 74326966 ATATGACGAATGGACGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Wdr35 ENSRNOG00000028783 ENSRNOT00000051970 2 1 1 80 6 34143867 34145562 GTTACTTCCAGAAATAGCCCA 58 34145604 34145622 TGGTTACACTTCAGGAACG 57 NA Rattus norvegicus 81 Racgap1 ENSRNOG00000049033 ENSRNOT00000071885 3 1 1 80 7 141279414 141279436 CAAGACTCCTTCATCAAATTCCC 60 141278315 141279376 TTGCTCTTGTTCCCAAATCTG 59 NA Rattus norvegicus 81 Hist1h2bk ENSRNOG00000055512 ENSRNOT00000089643 2 1 1 61 17 44527651 44527669 GTGCTGAAGCAAGTACACC 59 44527608 44527626 GAGTTCATGATGCCCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178,ENSRNOT00000021189 1 2 2 80 3 11851099 11854090 GAGTCCCAGGTGTATTCCC 59 11851037 11851056 GGGATTCTTCATCTGTGCCT 60 NA Rattus norvegicus 81 AABR07017623.1 ENSRNOG00000046052 ENSRNOT00000075484 2 1 1 83 15 29345549 29345741 GATTTGCTGGGTGAGAGGA 59 29345484 29345503 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000021768 2 1 2 97 18 79846427 79846445 CAGGGAGACTTTGTCTGTG 58 79846506 79848371 TCACACTCAAACACCACTG 58 NA Rattus norvegicus 81 AABR07017868.1 ENSRNOG00000050053 ENSRNOT00000071627 2 1 1 96 15 31948067 31948203 GCTCCTCATCCTCACAAGG 60 31948257 31948281 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Il34 ENSRNOG00000017602 ENSRNOT00000023823 1 1 1 80 19 40890941 40896446 TGGTTATACTGTCTTGGGATCC 59 40896486 40896505 TTTATCTTGGGCCAGAGTCC 60 NA Rattus norvegicus 81 Ccdc34 ENSRNOG00000005902 ENSRNOT00000065333 1 1 1 80 3 101156646 101156664 GAAGATGCCTGTGAGTCAG 58 101156708 101160262 CTCAACTTCACAGCTGGAG 58 NA Rattus norvegicus 81 Plod3 ENSRNOG00000001417 ENSRNOT00000001921 1 1 1 80 12 22725476 22725494 GGAAGTACAAGGACGACGA 59 22725283 22725432 GTTTGAGTTTCTCCCGCAG 59 NA Rattus norvegicus 81 Tdp1 ENSRNOG00000003831 ENSRNOT00000005167 3 1 1 80 6 123917734 123922045 AACCCAAGGAATATGGTTGAG 58 123922087 123922105 AAATGGGTGCTTGACTCTC 58 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 1 2 2 80 7 126661149 126667203 GTCATCACAGACACCCTCTC 60 126667245 126667264 GGACTCATCTGTACTGGTGG 60 NA Rattus norvegicus 81 Trem1 ENSRNOG00000022859 ENSRNOT00000049193 2 1 1 80 9 14734324 14734342 TCCACTGCTGTTGTTTCCT 60 14728261 14734282 ATTGTATGTGGAGACACTCGT 59 NA Rattus norvegicus 81 Plxna2 ENSRNOG00000007324 ENSRNOT00000009900 3 1 1 80 13 113516587 113518363 ACAGCTCGTACCAGTATGAC 59 113518403 113518424 TAATGAAGTTGCCATTCCACAC 60 NA Rattus norvegicus 81 Lcn1 ENSRNOG00000033761 ENSRNOT00000042910 3 1 1 80 3 4235003 4235292 CCAAATACACAGCCTATAGTGG 59 4235329 4235351 CATAGTAGAAGATGTAGTGGTCC 58 NA Rattus norvegicus 81 Fam129b ENSRNOG00000015845 ENSRNOT00000021689 2 1 1 80 3 11956259 11957574 GTATGAGAACAAAGTGGCCT 58 11957617 11957635 GAGGTGAGAACCTTGTAGC 58 NA Rattus norvegicus 81 LOC100910046 ENSRNOG00000018885 ENSRNOT00000032933 3 1 1 84 1 84584752 84584773 GATCACCTTACTAGAGCAGGAG 60 84584818 84592418 ACATGTCTCCAAACCTGGG 60 NA InUTR Rattus norvegicus 81 Clca4 ENSRNOG00000029889 ENSRNOT00000017943 1 1 1 80 2 250858324 250858345 AAGCTGAATACATCCACTTCAC 59 250857380 250858285 CCAACAGTCTTCCTGAATCTC 59 NA Rattus norvegicus 81 Lrrn1 ENSRNOG00000006802 ENSRNOT00000008879 2 1 1 60 4 139672194 139672212 CCACTGAATGAGCTGTACC 58 139672236 139672254 TGTCCTTGTCACTGTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr836 ENSRNOG00000033862 ENSRNOT00000050490 3 1 1 60 5 59265746 59265764 ACTTCACCTGTGAGATCCT 58 59265704 59265722 ACATTGATGGAGATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910637 ENSRNOG00000049190 ENSRNOT00000073447 2 1 1 60 1 169660950 169660969 ACCCTGTTGTCTATGGAGTG 59 169660986 169661010 GAAAGAATCCTTATGACACAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 3 2 2 82 8 107638194 107638212 TACTCTGTCACCGACAAGG 59 107636536 107638149 AATGACTCCCTGTCCTTGAC 60 NA Rattus norvegicus 81 Olr476 ENSRNOG00000009693 ENSRNOT00000012848 3 1 1 60 3 73400262 73400280 CCATTCCCTTGACACAGAC 58 73400220 73400240 GAGCATGGGTATAACAATCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 1 3 3 83 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63079 63097 CAACTGAACAGTGAGAGGC 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076235 2 1 3 60 X 72509922 72509940 GAAGGCTCGGAACTCTGAG 60 72509880 72509898 CTACTTGTAGCAGGGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911147 ENSRNOG00000042719 ENSRNOT00000045085 1 1 1 80 1 71629613 71629892 GGTCATGGCTTTCAAGATCAG 59 71629933 71629952 GGAATGACCAAGTTAGGTGC 59 NA Rattus norvegicus 81 Mcat ENSRNOG00000010539 ENSRNOT00000013994 3 1 1 99 7 124420273 124420292 TCATCGAGAACTGTGTTGCT 60 124416636 124420211 ACTGCATACAGACCTTCCG 60 NA Rattus norvegicus 81 LOC100910670 ENSRNOG00000047359 ENSRNOT00000073194 3 1 1 60 1 169669835 169669855 GCTTTGCTCAGATGTATACCA 58 169669874 169669895 CAGACAAAGATACCTGACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042039.1 ENSRNOG00000032088 ENSRNOT00000047160 2 1 1 85 X 146403236 146403254 GAAGGGCTCCTGGATTCAG 60 146401564 146403191 GGTGCTTAGAGTTTCCATTAGTC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 1 2 3 80 20 3316004 3316188 GAATCGCATCAATAAGGCCG 60 3316229 3316249 TTCCCTTTCGATTTCTCCTCC 60 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 1 2 2 80 1 273717501 273717519 TCCCTGAGACGAATAGGAC 58 273716183 273717460 CTGTAGTTCCATCCTTGTACTG 58 NA Rattus norvegicus 81 Mmp13 ENSRNOG00000008478 ENSRNOT00000011507 2 1 1 82 8 5524483 5524501 TTTCCTCCTGGACCAAACC 60 5524546 5526516 AAGTTGTAGCCTTTGGAGCT 60 NA Rattus norvegicus 81 RGD1560831 ENSRNOG00000007605 ENSRNOT00000009988 1 1 1 60 3 52998547 52998565 TGGCTGAAGATGGCTACTC 59 52998505 52998524 ATGATTTCTGTTCTGGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serac1 ENSRNOG00000017889 ENSRNOT00000060527 1 1 1 80 1 46959174 46960490 GCACTCAGAGATACCTTCAC 58 46959113 46959132 TGAAGCTGGTAGAGTCTCTG 59 NA Rattus norvegicus 81 Ap1s1 ENSRNOG00000001415 ENSRNOT00000001918 1 1 1 90 12 22668218 22669234 TGTCTATAAGAGATATGCCAGTCTC 60 22669282 22669300 GTATCGGTGGATCAGCTCC 60 NA Rattus norvegicus 81 Wdr76 ENSRNOG00000022491 ENSRNOT00000036209 2 1 1 80 3 113468686 113471568 CTGTGTTTGAAGAGGTGTACAG 59 113471608 113471627 CTAGCAGAGTAGAGGCATCG 60 NA Rattus norvegicus 81 Wdr76 ENSRNOG00000022491 ENSRNOT00000036209 3 1 1 80 3 113457417 113463234 CCTGAATCAAAGAGAAAGAGGC 59 113463274 113463293 GTCTACTTTCAACAACCGCA 59 NA Rattus norvegicus 81 Kifc2 ENSRNOG00000060123 ENSRNOT00000085152 1 1 1 80 7 117724239 117724365 CCTCCACTCTAGATGGCTC 59 117724409 117724427 TCTCATCCCTTGGTACCTC 58 NA Rattus norvegicus 81 Atp6v0e2 ENSRNOG00000008218 ENSRNOT00000010853 2 1 1 80 4 78169680 78170243 GCTGTTACCTCTTCTGGCT 59 78170285 78170305 AGATGGTCTCATTCTTCAGCT 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 3 3 3 80 18 72595257 72597867 CAGAGTAATTACATCCCAGAAACAC 60 72597904 72597923 TTGGTTCAACTGTTGGTCAC 59 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 2 2 2 80 2 188562603 188564538 AAATCTTCCCTGAGATTCTCCT 59 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Rn60_10_0631.1 ENSRNOG00000043259 ENSRNOT00000065209 3 1 1 60 10 63320435 63320453 GACCTTCAACCAAGTGGAG 58 63320474 63320495 GGAGAACTTACCTAGGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pzp ENSRNOG00000006709 ENSRNOT00000009467 1 1 1 80 4 161848518 161849536 GCTCTTTCACGATCTCAAGG 59 161848457 161848475 TTATGAAGTGGTGCGTTGG 59 NA Rattus norvegicus 81 AABR07004891.1 ENSRNOG00000033196 ENSRNOT00000025728 2 1 1 87 1 166187030 166189686 GTAAACAGGAGAAGGAGAAAGAG 59 166186965 166186983 TCTTCCTCCTCTTCCTCCT 59 NA Rattus norvegicus 81 AABR07049408.1 ENSRNOG00000023286 ENSRNOT00000057697 1 1 1 80 5 120960248 120960267 CTAGACGGAGACCATATCCA 58 120960309 120960341 CAGTTGTCCAAGGTATCCTG 58 NA Rattus norvegicus 81 AABR07049408.1 ENSRNOG00000023286 ENSRNOT00000057697 3 1 1 80 5 120952048 120957749 ACACAGCAATTCAGTGTCC 58 120960218 120960241 CAGGATCTGTATGACAGTATAGAC 58 NA Rattus norvegicus 81 Lrp10 ENSRNOG00000011592 ENSRNOT00000015468 3 1 1 80 15 33113707 33113726 TATGGACAGCTTATTGCCCA 59 33113768 33113878 CAGCACAGAGTTGTCATTGG 60 NA Rattus norvegicus 81 Haus4 ENSRNOG00000039284 ENSRNOT00000016401 3 1 1 80 15 33182795 33183105 TGATCCTCAAGATGAGGATGG 59 33182735 33182753 TGAGGCGATGTACTTCCAC 60 NA Rattus norvegicus 81 Olr744 ENSRNOG00000028267 ENSRNOT00000032617 3 1 1 60 3 79165508 79165526 TCTTCCTCAGCTCCTTGTC 59 79165466 79165486 AACTTAGGGACGACAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap14 ENSRNOG00000006899 ENSRNOT00000009123 1 1 1 80 X 123783572 123783592 GAGGATGAATGAGATAGCTCG 58 123783421 123783530 GGATTTCTGGCTTCTTCCA 57 NA Rattus norvegicus 81 LOC690435 ENSRNOG00000029253 ENSRNOT00000046749 3 1 1 80 6 128114783 128117532 CTTGGCAACTAGACAGGGA 59 128114721 128114741 AAAGGCTTGTGTTTACTGAGC 60 NA Rattus norvegicus 81 Fubp1 ENSRNOG00000043370 ENSRNOT00000066199 3 1 1 80 2 257435379 257435398 CGATCAAGGTGGTTTCAGAG 59 257435439 257435682 GGAATTGGGACATCTATCCCT 59 NA Rattus norvegicus 81 Gabra4 ENSRNOG00000002336 ENSRNOT00000003191 1 1 1 80 14 39169684 39172224 TGGGAGTTATGCATATCCCA 58 39172267 39172285 TCCTTTGGTACCTCCACTG 59 NA Rattus norvegicus 81 Aqp11 ENSRNOG00000013358 ENSRNOT00000018091 1 1 1 80 1 162703711 162705923 CTCCTTCTCTAGGCGTACTG 59 162703650 162703671 TGTTACTCAGTTGGTTGTTGTG 59 NA Rattus norvegicus 81 Fetub ENSRNOG00000001806 ENSRNOT00000048739 2 1 1 90 11 81655077 81656661 ATGAGACTGTTCATGGACAG 57 81655006 81655027 CGAAGTGTACAGTTATAAGCAG 57 NA Rattus norvegicus 81 Upk3bl ENSRNOG00000038896 ENSRNOT00000059451 3 1 1 80 12 23658263 23658282 AATGACAACAATTGCTCCGT 59 23657540 23658222 CAGGAATTTCACTCTGTAGGG 58 NA Rattus norvegicus 81 RT1-T24-4 ENSRNOG00000042905 ENSRNOT00000047439 2 1 1 81 20 3196335 3196353 GCTGTGGCCATTATTGGAG 59 3196397 3196593 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 AABR07072262.1 ENSRNOG00000060328 ENSRNOT00000075455 3 1 1 80 11 85561517 85561661 TTCTTCATCACTTAACAGGGTC 58 85561702 85561720 CTGTGCTTCCTAGAGACGT 59 NA Rattus norvegicus 81 Rnf114 ENSRNOG00000060821 ENSRNOT00000086459 2 1 1 80 3 164256356 164256378 TACCAGAGTTACATCATGGAAGG 60 164256415 164256641 GTATCGGTTTGGGACATTTCTC 60 NA Rattus norvegicus 81 LOC100125364 ENSRNOG00000015597 ENSRNOT00000020889 2 1 1 255 1 56949712 56949730 GACTACACTACTTCCGGGC 60 56950130 56950149 GATGCCAGGATCATCAACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07051533.1 ENSRNOG00000038274 ENSRNOT00000045492 2 1 1 60 3 16495785 16495805 GTCTTCATATTCCTGCTGCTC 59 16496011 16496029 ACTGGGTCATCACAGTGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07016863.2 ENSRNOG00000060401 ENSRNOT00000048713 3 1 1 123 15 2528904 2528922 CTGTAATCTCCGTGAGCGA 59 2529009 2531764 TTGATGCTGTTTCTGGCTC 59 NA InUTR Rattus norvegicus 81 Ip6k1 ENSRNOG00000019932 ENSRNOT00000041402 3 1 1 80 8 116804931 116811279 ATACAAAGGTGTGGTTTCTGTC 59 116811319 116811338 CTCTCCACATAAGGGTAGGC 59 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829,ENSRNOT00000071595 1 2 2 80 10 51532478 51532497 CTTATCTCCGAGAGTTGCCA 59 51527176 51532437 GCTCCTGGATATTAGAAGCCT 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 1 2 2 80 4 85137764 85141234 CTCACGGTTATCAGACTCAG 58 85137703 85137723 TTTGTACTTGGTCAGTTCCTC 58 NA Rattus norvegicus 81 Rnase13 ENSRNOG00000039500 ENSRNOT00000060539 3 1 1 60 15 28323228 28323246 TACAGCGAGAGCTTCTGTG 60 28323186 28323205 GGAAGGAGTTCTGAGTGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 2 2 2 80 4 160536060 160536078 ATCGTCCTGTTGATCATCC 57 160535755 160536016 ATTCTCGTTCACCTTGTCC 58 NA Rattus norvegicus 81 Adrb2 ENSRNOG00000019217 ENSRNOT00000026098 3 1 1 60 18 57514965 57514984 GTCTATTCCAGGGTCTTCCA 59 57514924 57514945 CCTCGGATTTGTCTATCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362909 ENSRNOG00000028279 ENSRNOT00000055889 2 1 1 88 4 161700822 161705401 ACCAAACTTCAAGAAGTCCCA 60 161705451 161705469 TATTGGGAAGTGGGTTGGG 59 NA Rattus norvegicus 81 Spred1 ENSRNOG00000005209 ENSRNOT00000007028 1 1 1 82 3 108846986 108850932 GATTTACAAACAACTGAGGAGG 57 108850974 108850993 TCACAGGTAACAACTGTCTC 57 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 1 1 3 80 14 34557028 34557979 GAGAAATAAGAAAGGTGTGGTC 57 34556969 34556989 TTAGCAGAAGACACATACTCG 58 NA Rattus norvegicus 81 RGD1564552 ENSRNOG00000045917 ENSRNOT00000050803 1 1 1 60 17 84704944 84704965 CACATGCGAATCTACAAGAAGG 60 84704905 84704923 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1291 ENSRNOG00000052671 ENSRNOT00000083163 2 1 1 60 15 35629953 35629974 GACAGAGAAGAACATCATCTCC 58 35629993 35630013 AGTGATGAAGAAGTAGAGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St5 ENSRNOG00000013934 ENSRNOT00000064902 2 1 1 80 1 174151689 174152303 TCAGAATACAGCAGTGAAACCT 60 174151630 174151648 TAAGCGCCTACAATAGCCA 59 NA Rattus norvegicus 81 Rnf146 ENSRNOG00000011588 ENSRNOT00000015421 3 1 1 80 1 30866699 30872095 GGATCTGTGATGGAAATGATGG 59 30872134 30872154 ACTCGCCTTCTTATTGGTAGG 60 NA InUTR Rattus norvegicus 81 Kcnh3 ENSRNOG00000057315 ENSRNOT00000086611 1 1 1 81 7 140896965 140897077 AAGGTCAATGTGTACGTTGG 59 140897120 140897139 GGTCCAGTCTTGGTAGTAGG 59 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645,ENSRNOT00000084851 1 2 2 80 1 267420025 267420265 CCTTACAAGTCCTGATGTCC 58 267419964 267419982 TTGTAGTCTCCAGGTGGTC 58 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 1 2 2 80 1 78518363 78518384 CCTTATGAAACAGATGAGGACC 59 78505955 78518323 TTTGGGCTTTGGTTTCTTGG 60 NA Rattus norvegicus 81 Katnbl1 ENSRNOG00000005814 ENSRNOT00000007688 2 1 1 80 3 103902964 103902984 TGAATGGATTATGGGAACAGG 58 103903026 103905863 AAGCATCTACGTCCTTAGC 57 NA Rattus norvegicus 81 Fgf6 ENSRNOG00000053662 ENSRNOT00000081426 1 1 1 100 4 159564056 159564074 AGACTCTACTGCAACGTGG 60 159564138 159565198 ATTTCCAGCAGGCTGTAGG 60 NA Rattus norvegicus 81 AABR07055446.1 ENSRNOG00000050691 ENSRNOT00000074535 1 1 1 190 7 3631079 3631097 AATCGTGTGGAAACAACCG 59 3631448 3631470 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838,ENSRNOT00000018097 1 2 2 100 9 73940551 73943411 CTAGCAATGAAGAGATGAATGC 58 73940472 73940490 ATCTTCATAGCCTCCCTGG 58 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838,ENSRNOT00000018097 2 2 2 102 9 73940551 73943411 CTAGCAATGAAGAGATGAATGC 58 73940470 73940489 AAATCTTCATAGCCTCCCTG 57 NA Rattus norvegicus 81 Rn60_X_0707.2 ENSRNOG00000051133 ENSRNOT00000076093 1 1 1 126 X 69786780 69786801 TGTCTTCTCACAAGACTTTCAG 58 69786675 69786697 GTCTTCTCTTAGAGTTGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980,ENSRNOT00000081254 2 2 2 100 20 25990832 25990853 CGACCTTTGAACAATACAAAGG 58 25991237 25991257 GCATAGTCAGTAAGACAGTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir541 ENSRNOG00000036486 ENSRNOT00000054594 2 1 1 60 6 133892667 133892687 GAAGGGATTCTGATGTTGGTC 59 133892709 133892727 GATTCTGTGTTCGCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg12 ENSRNOG00000004591 ENSRNOT00000065848 2 1 1 80 7 129799601 129799701 CACCTCAGACAGATGTCCT 58 129799539 129799559 CATCGTTGACCTGTAGAAACC 59 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000029949 ENSRNOT00000044152 2 1 1 85 6 129056980 129057000 CATTAGGGAAGTCTTCTCCCA 59 129057046 129057967 CCTTGTGGACTACCTGAGAG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 1 2 2 80 5 124021425 124143314 GAAGAAAGGTCAGGATCGC 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 Chrm3 ENSRNOG00000049410 ENSRNOT00000075651 1 1 1 60 17 63993610 63993628 TAGACCACTCACCTACCGA 59 63993568 63993586 CAGACCAATCATCACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aard ENSRNOG00000004708 ENSRNOT00000006257 1 1 1 60 7 91592475 91592493 GAAGAGACAGGACCAGGAG 59 91592517 91592535 ATTCATCTCCTCGTCTTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txk ENSRNOG00000025925 ENSRNOT00000035623 2 1 1 80 14 38045599 38046238 AAAGTCAATCCAGCAGAGGT 59 38046279 38046299 TCTCTTCTGTAAACTCCTGCG 60 NA Rattus norvegicus 81 Aprt ENSRNOG00000014405 ENSRNOT00000064180 3 1 1 80 19 55387614 55387826 TAGAGTATGGGAAGGCTGAG 58 55387553 55387572 GGAGATCATCCACAATGACC 58 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 2 2 2 80 2 256680123 256680142 GTGGAAGGTTATCAGACCTC 57 256680185 256682939 GCACTCGTCTACATCTTGG 58 NA Rattus norvegicus 81 Olr10 ENSRNOG00000046729 ENSRNOT00000047255 2 1 1 60 X 95344847 95344866 CAGTGACTCAGTTCATCCTC 58 95344889 95344907 AAGAGTGGATAGCGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164,ENSRNOT00000091573 2 3 3 80 8 117773123 117773146 GTTGTAAAGTGGAGTCCATATTCC 60 117773180 117774814 TGGATATGTCTACATTCTGAGGTC 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 3 5 5 82 10 70163838 70163856 GAGAAGTGGGAGCTGATGG 60 70162262 70163794 TCTTCATTACCAGACACCAGG 60 NA Rattus norvegicus 81 Mir3548 ENSRNOG00000035650 ENSRNOT00000053773 1 1 1 60 5 173489411 173489430 CAAGAAATCCAGCACTGTCC 59 173489452 173489471 TTCCTACCAAAGCATACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754,ENSRNOT00000091712 2 2 2 80 19 55907910 55907929 GTGGTTGCTTTCCATGAGTC 60 55907970 55909739 TATGGAGACCTTCATCACAGC 60 NA Rattus norvegicus 81 Rn60_X_0773.3 ENSRNOG00000027972 ENSRNOT00000033532 2 1 1 60 X 77259203 77259222 ATCTAAGAAGATTGACCGCC 58 77259162 77259182 CACATTCCCTTTGACCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 1 2 2 80 3 45111143 45111164 CCTTTGAAAGACTTCATCAGGA 58 45111007 45111104 AAGAGTGACCTAGTAACTCCA 58 NA Rattus norvegicus 81 Terf2 ENSRNOG00000020435 ENSRNOT00000027695 1 1 1 80 19 39281130 39281149 CCTTATCAGCATCACCATCC 58 39276959 39281087 TGTCTTTCGATGCTTTGGG 59 NA Rattus norvegicus 81 Tekt5 ENSRNOG00000002571 ENSRNOT00000003465 2 1 1 80 10 5362545 5365656 TCCAGATTAGAGATAATCGGGA 58 5365694 5365715 CATCAATATACTGTGAGGAGCT 58 NA Rattus norvegicus 81 Olr155 ENSRNOG00000017234 ENSRNOT00000023147 3 1 1 60 1 169590362 169590381 GGGATGGAAGACAAACACAG 59 169590402 169590422 CGGTGATTAAGTACATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910597 ENSRNOG00000050668 ENSRNOT00000074466 1 1 1 60 1 169637226 169637246 GCTCAGATGTATGCCATTCAC 60 169637267 169637286 CCATGCAGAGGAAGATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl47 ENSRNOG00000011639 ENSRNOT00000015864 1 1 1 84 2 119136787 119136806 CACGTTGTCAAGGAAAGGAC 60 119136251 119136742 CCATGAAGCTCCAGATTTGAC 59 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 1 2 2 80 11 69018517 69019951 CTAGAGTCTGAAGAAGATGTCTCC 60 69018460 69018481 AGAGAAGTAGGGCTTTACATGG 60 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 1 4 4 80 1 250692825 250693531 AATCAGCAAGTGCTGAAGG 59 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Ankrd9 ENSRNOG00000008056 ENSRNOT00000010610 1 1 1 80 6 135412210 135412230 CACCTCTGTAACCCAATTACC 58 135411813 135412168 ATCAGGAATGAGCTCCTGG 59 NA InUTR Rattus norvegicus 81 Dach1 ENSRNOG00000008834 ENSRNOT00000011926 1 1 1 80 15 82139511 82143225 AAGAACAGAGCCATAGTCCA 59 82139450 82139471 CTCAAATTCTAGTGCTTCTTGC 58 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048370 ENSRNOT00000043828 1 1 1 60 1 68670721 68670741 TCCAGTACATCCATGATTGTC 58 68670763 68670781 TGTGAATGTGTTGAACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050637.1 ENSRNOG00000048616 ENSRNOT00000075354 3 1 1 60 5 171825999 171826018 CTACGAGAAAGACCCAGTCC 60 171826036 171826059 GTTACCTTCTGTGTAATCATCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130,ENSRNOT00000080575 2 3 3 80 4 51914437 51917440 CTTCCATAGGCTGAAGATCC 58 51914376 51914394 TCAAATGTCAAAGACGCGA 58 NA Rattus norvegicus 81 AABR07049524.1 ENSRNOG00000022150 ENSRNOT00000030319 1 1 1 94 5 125862756 125862774 CTGCAAACTCAGCCTTCTG 59 125862664 125862682 TTTGAACCTTGGGCTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp422 ENSRNOG00000013379 ENSRNOT00000018050 3 1 1 230 4 148761417 148761435 TCTCCGCCTCTTCCTAGAG 60 148759398 148759418 CTTGCACTTCGAGAAATACCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cdrt4 ENSRNOG00000003294 ENSRNOT00000004392 2 1 1 85 10 49368351 49399759 ACTACTCAGTAAGACTCACGG 59 49399806 49399824 AAATGTGACATAGGCTGGC 58 NA Rattus norvegicus 81 LOC100912339 ENSRNOG00000050082 ENSRNOT00000072310 3 1 1 60 3 72974597 72974615 GGCAACTGAATGCTTTCTC 57 72974638 72974657 CTTACAGATGGCTGCATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r32 ENSRNOG00000048505 ENSRNOT00000044754 1 1 1 60 1 71844709 71844728 GTTTGTCACTCTTGTTCCTG 57 71844751 71844769 ATCTGGGACACTTCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult5a1 ENSRNOG00000015695 ENSRNOT00000051452 2 1 1 88 19 55966970 55966988 ACCCTAGAGTCCCTGAAGG 60 55957801 55966919 CAGGTGGTACCTGACTTAGG 59 NA Rattus norvegicus 81 Txndc8 ENSRNOG00000029073 ENSRNOT00000042788 3 1 1 86 5 75114554 75114572 GGAAATAGGCTTGTGGTGG 59 75106921 75114506 TAAAGACATTGCCTGGAAAGC 59 NA Rattus norvegicus 81 Cryba1 ENSRNOG00000008700 ENSRNOT00000011608 2 1 1 82 10 65166729 65167231 AGATACAGTGTGGAGCTTGG 60 65167276 65167294 TCCGTGATGGTCACATTCC 60 NA Rattus norvegicus 81 Riok3 ENSRNOG00000023376 ENSRNOT00000039377 1 1 1 80 18 3587192 3587211 GTTGTACAAGGAATGCACCC 60 3587254 3587363 ATCAACCAGACCTTCCCAG 59 NA Rattus norvegicus 81 Tmem8c ENSRNOG00000006142 ENSRNOT00000008327 3 1 1 95 3 5608938 5609328 CTTCTTTGAGGAATGGGATTACAC 60 5608866 5608884 TTCTTGTTGACCTTGGGCA 60 NA InUTR Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 3 1 1 65 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236314 124236337 CCTCTGAATCTTCCTAAGTTTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Nckipsd ENSRNOG00000031816 ENSRNOT00000047482 2 1 1 81 8 117608119 117608137 CTGTTATTCCGCCCTTGTC 59 117608180 117608384 TGTACCCAGGTGTTCATAGTG 60 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 1 3 3 80 3 21850537 21850560 GTCTCAAGTATGAACTCATCTCAG 59 21844841 21850501 TCTGTCCATCTACTTCTACCTC 58 NA Rattus norvegicus 81 Olr224 ENSRNOG00000029766 ENSRNOT00000047239 2 1 1 60 1 171044559 171044577 CACACCCATGCTTAATCCC 59 171044517 171044537 GATTGCATCCTTGACTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chpt1 ENSRNOG00000058271 ENSRNOT00000080939 1 1 1 80 7 29053559 29053580 CCAGGTAGCTTTAGTGATTGTC 59 29052269 29053524 TCTAGAATAGGTATCGTATAGTCCC 58 NA Rattus norvegicus 81 Olr1662 ENSRNOG00000061218 ENSRNOT00000086807 1 1 1 60 17 45687455 45687476 GTTGAAATGTCTGTCTTTGCTC 59 45687416 45687438 GAATAAGGATGAGAGGTGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpxm2 ENSRNOG00000015902 ENSRNOT00000051853 3 1 1 80 1 204060769 204060790 ACACAGAGGAATTTCAGAAGGA 60 204055079 204060731 TGAAGTCATTTAGACTTCCAGC 59 NA Rattus norvegicus 81 Rprd1b ENSRNOG00000012923 ENSRNOT00000017265 3 1 1 81 3 154526181 154526202 GAGGAGGAAGATGATGACTACC 60 154526240 154527845 TGATTAACTCCTCAGTCAAGAGG 60 NA Rattus norvegicus 81 Npc1 ENSRNOG00000012016 ENSRNOT00000016167 2 1 1 80 18 3620234 3620964 CAACTTGGTGATGACCTGTG 59 3620173 3620191 CTTCCTTTGGTGCTCATGG 59 NA Rattus norvegicus 81 Efhc2 ENSRNOG00000002986 ENSRNOT00000037360 1 1 1 80 X 5896110 5896130 TCTACCTTGAAGATGACACCA 59 5896170 5907732 GCCTGATAGAAGTACCTTGAG 58 NA Rattus norvegicus 81 Gabrg1 ENSRNOG00000002360 ENSRNOT00000003240 2 1 1 80 14 40015352 40025913 GATCCCATAAACATGGAGTACAC 59 40025951 40025971 GGTGCTGTTGAACTTTAAACG 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595,ENSRNOT00000089473 1 2 2 80 6 93513238 93513257 AAGATCAAACAGCAGGAGGA 59 93513298 93515541 GCTTTCAGTTTCTTCCCTCTC 59 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358,ENSRNOT00000064249 3 2 2 80 2 260504832 260504851 AGGATGCACTTTGAAGATGG 58 260504894 260505177 CACGTCACTAATGCCACTC 59 NA Rattus norvegicus 81 AABR07041481.1 ENSRNOG00000005665 ENSRNOT00000007474 3 1 1 89 X 131381800 131381818 CTACTAGCACCATTGCCTG 58 131381919 131381937 TGATGGACCAGCTCATGTG 60 NA DesignNoJunction Rattus norvegicus 81 Angptl2 ENSRNOG00000016678 ENSRNOT00000022585 3 1 1 80 3 12290127 12292211 ATGATGTCTACACAGGAAACTG 58 12292252 12292270 CATTGAGGTTGGAGTGAGC 59 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 3 3 3 80 10 88410810 88413057 TGAACTATGCACAGATCCG 57 88410748 88410766 CCTTCTTGATGAGCTTCCG 58 NA Rattus norvegicus 81 AC115670.1 ENSRNOG00000059342 ENSRNOT00000083706 2 1 1 60 17 45726543 45726564 GTTGAAATGTCTGTCTTTGCTC 59 45726504 45726527 GAATAAGGATGAGAGGTGTAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mab21l2 ENSRNOG00000031398 ENSRNOT00000049461 1 1 1 60 2 185851607 185851625 GGGAGTCTTCAACTTCGTG 58 185851565 185851583 GCTTAGTTTGAGCACTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ednrb ENSRNOG00000010997 ENSRNOT00000014747 3 1 1 80 15 88014130 88035045 TAATGCCTACAAGCTGCTG 58 88014068 88014087 GAAGCCTTCTGTATGAAGGG 58 NA Rattus norvegicus 81 Mir22 ENSRNOG00000035620 ENSRNOT00000053743 2 1 1 60 10 62299603 62299621 CCGCAGTAGTTCTTCAGTG 58 62299644 62299663 CTTCAACTGGCAGCTTTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500594 ENSRNOG00000023112 ENSRNOT00000031564 2 1 1 80 5 169635102 169635188 ACTTCAACAAGGTAGGGCT 59 169635232 169635250 TGACTTTCTGTCGAGAGGG 59 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 2 2 2 80 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781644 2781893 AAAGGAAATCGAGAAGTCCAC 58 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 3 2 2 81 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781643 2781892 CAAAGGAAATCGAGAAGTCCA 58 NA Rattus norvegicus 81 Ttc22 ENSRNOG00000007189 ENSRNOT00000009582 2 1 1 80 5 126241534 126241552 CTGACCTTGAGGAAGTGGT 59 126241593 126241922 CGCCCATGTAATAGTAAACCTG 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000084246 1 1 5 60 20 4047187 4047205 CCATCCCTCCAATGTTACC 58 4047229 4047247 CTCAGTAGTGGAAGCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 1 1 1 60 X 152108567 152109992 TCCAGAGTAAGCCTGATGG 59 152108525 152108543 TGTTGCTAAATGCCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 2 2 2 80 7 130143807 130143829 GACCTGTTGAAGTTTGAAGAGAC 60 130143431 130143767 ATCGTGGGATAGCTTTGGG 60 NA Rattus norvegicus 81 Fgf7 ENSRNOG00000009425 ENSRNOT00000012700 1 1 1 80 3 118318090 118318108 GTGGTACCTGAGGATTGAC 57 118318149 118365600 CTGATTTCCATGATGTTGTAGC 58 NA Rattus norvegicus 81 LOC100912182 ENSRNOG00000031022 ENSRNOT00000048198 2 1 1 60 18 1505185 1505203 AAACCCGAAGGACTTTCTG 58 1505226 1505245 TACTGGGTCACTTTGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo15 ENSRNOG00000038225 ENSRNOT00000058199 2 1 1 80 18 81826247 81831648 CCTGATCCAAACAGTCCAC 58 81831691 81831710 GCCCATCATAGTAGACTCAC 57 NA Rattus norvegicus 81 AABR07068221.2 ENSRNOG00000049962 ENSRNOT00000064642 1 1 1 80 9 91092513 91092531 TCGTCTATACCATGGCACC 59 91090092 91092470 AAGAAGTCTTCCTGCCTCTC 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 2 2 2 80 6 134991204 134991222 GAGGGAGAAAGAAGAGCGA 59 134991265 134991484 TGGATCAGAATCTCCTGCTC 59 NA Rattus norvegicus 81 LOC100910138 ENSRNOG00000031710 ENSRNOT00000051031 2 1 1 83 14 33908890 33911134 CAATTCAGAACACCAGACTGTC 60 33911178 33911196 GTTCATATCCGTTCCGCAC 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166,ENSRNOT00000082791 2 2 2 87 4 109474246 109474265 TATCTTTGTGTCCTCCCTGG 59 109473598 109474197 CATTGTGCCATGTGAAAGAC 58 NA Rattus norvegicus 81 Nudt12 ENSRNOG00000022576 ENSRNOT00000066968 1 1 1 80 9 105691030 105691050 TGGACTGCTTTAATGTATGCC 59 105690362 105690990 CGATCTGTCACATCCTTTCTC 59 NA Rattus norvegicus 81 Palb2 ENSRNOG00000025126 ENSRNOT00000047420 3 1 1 80 1 192075921 192075940 AGTTTCTCTTTGGAAACCGT 58 192073420 192075880 TGTAATACTGGAACCTCTGTG 57 NA Rattus norvegicus 81 Anxa10 ENSRNOG00000014339 ENSRNOT00000059724 2 1 1 80 16 29720532 29722162 GCCTACTGTTTACAATACAGCA 59 29722199 29722221 CATAAGAGTATCTCGGAAGTGTC 58 NA Rattus norvegicus 81 RGD1305184 ENSRNOG00000038957 ENSRNOT00000045950 1 1 1 60 18 55667025 55667046 AATTACAGAAGCAGCCATTGAC 60 55667066 55667085 TTCTAGCCAGACAAACTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640,ENSRNOT00000070873 1 2 2 80 3 5548539 5551328 TGGGAAAGGTCTGAAGGAG 59 5551372 5551390 AAGCCACATAGCTCTTCCT 58 NA Rattus norvegicus 81 Ago2 ENSRNOG00000008533 ENSRNOT00000011898 1 1 1 80 7 114368412 114377089 AGTGAACAGGGAAATAGTGGAG 60 114368353 114368371 CCATCAAACACTGGCTTCC 59 NA Rattus norvegicus 81 Msmb ENSRNOG00000039786 ENSRNOT00000026772 2 1 1 83 16 8285705 8285723 GTGACAGCATCCAATGCAG 60 8285764 8288033 GTCTACATCTGTACATTCATCAGAC 59 NA Rattus norvegicus 81 Abhd3 ENSRNOG00000029370 ENSRNOT00000041878 3 1 1 81 18 1903742 1903760 TTATCCACCACGTTCACAG 58 1898839 1903697 TTCAGAAGCAGCATTCCTC 58 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 1 1 1 60 15 34252029 34252048 GCAGTTTCACGTTAACTCTC 57 34252068 34252439 CTTTATGTTGAAGAAGTTGCCG 59 NA DesignNoJunction Rattus norvegicus 81 Foxe1 ENSRNOG00000023497 ENSRNOT00000012637 2 1 1 60 5 61955426 61955444 CAAGAAGTGGCAGAACAGC 60 61955468 61955486 GATCTTGAGGAAGCAGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g5 ENSRNOG00000016838 ENSRNOT00000022716 3 1 1 81 5 157248940 157249724 TTAGTCATCTGCGAACACG 58 157248877 157248895 TTCTCCTCAGGCAGTAGAC 58 NA Rattus norvegicus 81 Dsg4 ENSRNOG00000022364 ENSRNOT00000038450 3 1 1 80 18 12086646 12087825 GATTCCTCTGAAATCTACACCA 58 12087866 12087884 TGTATTGAGCTCCACTCCT 58 NA Rattus norvegicus 81 Cd81 ENSRNOG00000020451 ENSRNOT00000027760 1 1 1 80 1 216250808 216250828 ATGATGTTTGTAGGCTTCCTG 58 216250870 216251557 AAGGCAAGTGAAGAACGTC 58 NA Rattus norvegicus 81 Rabggtb ENSRNOG00000009992 ENSRNOT00000065997 2 1 1 80 2 260111400 260112366 AGACCCGAGAAGTTACCAG 58 260111338 260111357 AATCCAATGAAGTCTCCCGA 59 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000002542,ENSRNOT00000078394 1 2 2 67 11 88092356 88092374 GATTTCGAGAGGCCTTAGC 58 88092102 88092120 TTGAGCTTCTAGCTCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tacr1 ENSRNOG00000005853 ENSRNOT00000007984 1 1 1 80 4 113248174 113340314 CCTTCGACAGATACATGGC 58 113340356 113340376 TGACAAAGATGACCACTTTGG 59 NA Rattus norvegicus 81 Sumf2 ENSRNOG00000000922 ENSRNOT00000001224 3 1 1 81 12 30483381 30486515 TAAAGACTTCAGGGAGTTTGTC 58 30483321 30483339 ATCCTCAAAGACGAAGCTC 57 NA Rattus norvegicus 81 Krtap16-5 ENSRNOG00000040064 ENSRNOT00000061606 1 1 1 60 11 28900092 28900110 TTGGAGGCTACGGATATGG 59 28900050 28900068 CTGGAGAACCCGTATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789,ENSRNOT00000064557 2 2 2 98 3 8958395 8961468 AATACCCTGCAGGTGATCTG 60 8961526 8961547 GCTTGAATATGATGAGGGTCAC 59 NA Rattus norvegicus 81 Sgcd ENSRNOG00000002372 ENSRNOT00000003224 3 1 1 80 10 32280012 32442103 CTTCACAATTGATGGAATGGG 58 32279952 32279973 GGTTGTAAGAACTCTGAGTCTC 58 NA Rattus norvegicus 81 Gbas ENSRNOG00000023919 ENSRNOT00000035621 3 1 1 82 12 30546862 30546880 TCTGGAGGTATGAGGGAGG 60 30545530 30546819 ACGGAAACTTACAAATTCCTGG 59 NA Rattus norvegicus 81 Uts2b ENSRNOG00000038512 ENSRNOT00000042650 1 1 1 80 11 76839963 76842200 CTTAGACAGCTAAAGAAGCTGAG 59 76842236 76842258 GGATAGCTTGTCTAAAGCATTGG 60 NA Rattus norvegicus 81 RGD1308601 ENSRNOG00000017215 ENSRNOT00000038767 2 1 1 80 18 74037509 74058703 CAGAGATACCAGATGGACCTC 59 74037449 74037470 CCACATTTATCACTTCTGGGTC 59 NA Rattus norvegicus 81 Aqp6 ENSRNOG00000053181 ENSRNOT00000083570 1 1 1 80 7 141259931 141260207 ATCTCATTGGGATCTACTTCAC 58 141260247 141260266 CAAACTTCCCAACAATGACC 58 NA Rattus norvegicus 81 Csf3 ENSRNOG00000008525 ENSRNOT00000011509 2 1 1 80 10 86618429 86618447 CATACCTGCAGAGCTTCCT 59 86618491 86618511 TTTCTGGAAAGTGCTTCTGC 59 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 2 2 2 80 9 100961270 100961291 TTTGATGAAGTCATCCTGTCCA 60 100961331 100963320 CTGGCAAACCAGAATTCCAG 60 NA Rattus norvegicus 81 Cwc15 ENSRNOG00000008490 ENSRNOT00000011855 3 1 1 81 8 12996849 12998016 GATCCTCTCACAGATGAGGA 58 12998060 12998078 CTAGCTCTGCAAGAAGAGC 58 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 2 2 2 84 1 32338072 32339429 CCAATAACTGCTATAGAGACGC 59 32338009 32338027 AAGGAGAAGACGACGAAGC 60 NA Rattus norvegicus 81 Arpc5l ENSRNOG00000014317 ENSRNOT00000019405 2 1 1 99 3 23306161 23306708 TCAAGCTGTGAAGGAACGA 59 23306771 23306789 ATTCCTGTCCAGTGACTGC 60 NA Rattus norvegicus 81 Itih1 ENSRNOG00000033386 ENSRNOT00000051751 3 1 1 80 16 7017032 7017053 CACATGCTAGAGAATCATGTGG 59 7016423 7016994 TTCTGTCTTCATCCTCTTAGCC 60 NA Rattus norvegicus 81 Olr1627 ENSRNOG00000012510 ENSRNOT00000016674 2 1 1 60 15 26888586 26888606 TTCTACACCATCTTCACACCC 60 26888628 26888646 CCTCTTTGTTTCTCAGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552474 ENSRNOG00000039615 ENSRNOT00000060737 3 1 1 60 X 14755322 14755342 ACTTACAGAGATTCCATGCAG 58 14755282 14755301 CTTCATAGCTTGATTGGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxna1 ENSRNOG00000017003 ENSRNOT00000022951 1 1 1 80 4 121225966 121226096 CTACAAGACCCTGACCCTG 59 121225904 121225923 TCACAGTTCAGTCCCTTCAC 60 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 2 2 2 87 12 25016401 25016419 GTTCCTGGTGGAGTAGCAG 60 25016559 25016731 CTCCACCAAGACCGTACTG 60 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000089138 2 1 2 97 17 6684639 6689005 CGTGGTTTGAGGAGAAATGC 60 6689065 6689083 CAAGACAGTCCCGGATCAG 60 NA InUTR Rattus norvegicus 81 Dph3 ENSRNOG00000019727 ENSRNOT00000026742 3 1 1 81 16 8207315 8207337 CTTTCAATATGACGAGGACACAG 60 8206849 8207277 CAAATCTTCCTTGGTGATGGAG 59 NA Rattus norvegicus 81 Gsc ENSRNOG00000010605 ENSRNOT00000014204 2 1 1 83 6 128148026 128148044 ACAAAGTACCCAGACGTGG 60 128147600 128147980 CTTAAACCAGACCTCCACCT 59 NA Rattus norvegicus 81 Qprt ENSRNOG00000016980 ENSRNOT00000023080 2 1 1 131 1 198544938 198545191 TATGGAGAAGGCAGTGCTG 60 198544825 198544843 AAGTTGTCCAGCATGACCA 60 NA Rattus norvegicus 81 Ntpcr ENSRNOG00000019922 ENSRNOT00000026965 3 1 1 81 19 58568424 58576003 TCCTAAGGAATGCTGTCCC 59 58576048 58576066 CTGAACAGCTCCATCTTCC 58 NA Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 1 1 1 60 3 148104451 148104469 TCTGCTCATTGTGGCTCTC 60 148103784 148104428 TTTGAATTCAGTGCTCCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Gabrb1 ENSRNOG00000002327 ENSRNOT00000003170 2 1 1 80 14 38758740 38758758 GCTTGCATGATGGATCTCC 59 38664162 38758699 GGTGGTATAGCCATAACTTTCG 59 NA Rattus norvegicus 81 Mmp15 ENSRNOG00000012622 ENSRNOT00000017629 1 1 1 81 19 10082709 10084085 CTTCAAAGGTAACCGCTACTG 59 10082648 10082667 TGTACCATAGCTGCTCAGTG 60 NA Rattus norvegicus 81 Ky ENSRNOG00000008210 ENSRNOT00000010992 3 1 1 80 8 110998748 110998766 CAGCTGACTGTGGAAATCC 59 110998809 111001008 ACCTTGTAAACGTTTAGCCA 58 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 2 1 1 60 1 88621375 88621395 GACAACATCCTGTACAGACTG 59 88621417 88621830 ATAAACAGTAGGCAGTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Atp8a1 ENSRNOG00000034200 ENSRNOT00000044017 1 1 1 80 14 42180017 42180786 CTCCTATTGGACATGGTTCAG 58 42180823 42180846 GATGAGTAGATCCCAAAGAATACC 59 NA Rattus norvegicus 81 Svs4 ENSRNOG00000013796 ENSRNOT00000018456 2 1 1 61 3 160660792 160660810 TAGTGACAGGAGCCATTGG 59 160661294 160661313 GACAACTTCTTCCGACTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Svs4 ENSRNOG00000013796 ENSRNOT00000018456 3 1 1 62 3 160660788 160660806 CTTCTAGTGACAGGAGCCA 58 160661292 160661310 AACTTCTTCCGACTGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Cryl1 ENSRNOG00000008989 ENSRNOT00000012093 3 1 1 80 15 37647907 37647926 GAGGCTTCAAGGTGAAACTC 59 37625449 37647867 ATTTCATCTCCTTCCTGATGCT 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 1 2 2 80 11 87916345 87916365 GGAATGAAGACTCTTGAAGCA 58 87915050 87916303 CTCTCGGGTTCTGTTTGTC 58 NA Rattus norvegicus 81 Elf3 ENSRNOG00000006330 ENSRNOT00000008754 3 1 1 82 13 52086658 52086676 GTTCCCACTCCTCTGACTC 59 52086440 52086613 AGGAAAGCCATCTCTAGGGA 60 NA Rattus norvegicus 81 Zfp866 ENSRNOG00000042580 ENSRNOT00000034415 3 1 1 80 16 21422367 21422787 TGGGAGAAATATGAGAGGTTCC 59 21422826 21422846 CGTGTCAGAGTTTCTTCAACC 60 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000018828 2 1 2 131 7 143960115 143966754 TCTGCTTGAGGAAGAAGCT 59 143960002 143960020 TATGGCTTCTTTGTGCCTC 58 NA Rattus norvegicus 81 Caap1 ENSRNOG00000007299 ENSRNOT00000010173 3 1 1 110 5 113500780 113522522 AATCAGTCAGCAAGATACCTG 58 113481469 113481490 CTGAGTACATCACTATCTTCCC 58 NA Rattus norvegicus 81 Rbm8a ENSRNOG00000021215 ENSRNOT00000028807 3 1 1 109 2 198755368 198755686 ATGGTGACGAAAGCATCCA 60 198755874 198755893 ACTGTCATAATCTTCCCGCA 59 NA Rattus norvegicus 81 Grm6 ENSRNOG00000000233 ENSRNOT00000000249 1 1 1 80 10 36357454 36357473 ACCACCTGTATTATCTGGCT 58 36357512 36358838 GGTTTGGATGTAGATCTTCTCAG 59 NA Rattus norvegicus 81 RGD1562758 ENSRNOG00000048704 ENSRNOT00000043709 3 1 1 60 18 63825010 63825028 CATGTTTGTGATGGGTGTG 57 63824968 63824987 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1646 ENSRNOG00000053618 ENSRNOT00000081045 2 1 1 60 15 32925442 32925461 GTTCACCTCTGTCATCTTCC 58 32925401 32925419 GATGGTCTTATGTCCCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rem2 ENSRNOG00000011646 ENSRNOT00000016020 1 1 1 100 15 33123171 33124246 CATCTGGGAACAGGGAGAC 60 33124310 33124328 AGCTTCGTCGATCTGTGAC 60 NA Rattus norvegicus 81 Hsd17b3 ENSRNOG00000019096 ENSRNOT00000025850 3 1 1 80 17 1595075 1597079 TCTCAGAAGAGATTGAGAGGAC 59 1595016 1595037 GGTCATAGATGTCTTCTCTGGT 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 2 1 2 173 9 105944390 105944527 ATGATGATTGGGACCACAGG 60 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 LOC498826 ENSRNOG00000031060 ENSRNOT00000046326 1 1 1 80 18 15276734 15283747 ATACAAGAGATGGACTGGAGC 59 15276674 15276692 CATGACCATTGCAACTCCG 60 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 3 2 3 91 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146089 115146108 CAGTAGGAACATGAGGAGCA 59 NA InUTR Rattus norvegicus 81 Cdcp2 ENSRNOG00000009221 ENSRNOT00000012427 3 1 1 81 5 126698651 126703610 GCTATGGAAGGTGTCAAGTG 59 126703651 126703672 GATACAGACTTGGGAAGTTTGG 59 NA Rattus norvegicus 81 Chst13 ENSRNOG00000025930 ENSRNOT00000029915 1 1 1 230 4 122231141 122231159 AAACAAAGTTCTGGGCTCC 58 122225220 122225238 ACGTAGCAGTACAGAAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 2 2 2 87 7 60135865 60135883 CATCCTTCTGTGGGAAGTG 58 60134033 60135817 AAGTATGTACTTGTTCCTCAGC 58 NA Rattus norvegicus 81 Ang2 ENSRNOG00000025562 ENSRNOT00000032536 1 1 1 60 15 28103939 28103957 AATGGAAGCCCTTACGGAG 60 28103897 28103915 AAGTGGTGATCTGGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 1 2 2 84 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128196 AGCAAATGATCTCCTGGGT 59 NA Rattus norvegicus 81 LOC100912159 ENSRNOG00000046583 ENSRNOT00000074072 2 1 1 60 10 12433244 12433264 GAACCCTTTCATCTACAGCCT 60 12433204 12433224 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc12 ENSRNOG00000009039 ENSRNOT00000029859 3 1 1 80 6 48008225 48016564 ACAACATTCAGGGAGATGC 58 48008163 48008182 TTAAGACTTGCCTCTTTGCT 58 NA Rattus norvegicus 81 Hcrtr1 ENSRNOG00000013838 ENSRNOT00000018674 1 1 1 81 5 148349182 148349200 CTTCACCTTCTCCCACTGG 60 148346821 148349137 CCGAAATTTGCCACTGAGG 60 NA Rattus norvegicus 81 Dusp2 ENSRNOG00000013862 ENSRNOT00000018549 1 1 1 80 3 119777596 119777957 GTTCCTATCTATGACCAGGGTG 60 119777997 119778016 AAGATCTGAGGAGTGGTTGC 60 NA Rattus norvegicus 81 Yeats4 ENSRNOG00000005689 ENSRNOT00000007580 1 1 1 80 7 60289561 60289579 ATGCAGCAACTGTTAACCA 58 60288106 60289519 CACTTCAAGTTCTGCAAACTC 58 NA Rattus norvegicus 81 Ttc4 ENSRNOG00000042467 ENSRNOT00000010229 2 1 1 80 5 126280037 126280055 AGAAGAAGTGTGCAGACCC 60 126278336 126279996 GGAAATTGCCGAGATAGTACTG 59 NA Rattus norvegicus 81 Ttc4 ENSRNOG00000042467 ENSRNOT00000010229 3 1 1 80 5 126281620 126281638 TCCCAAGGAGTTTCCTGAC 59 126280133 126281576 GTCTTGGCTTGCTCTTCTG 59 NA Rattus norvegicus 81 Rn60_X_0752.1 ENSRNOG00000051243 ENSRNOT00000075937 2 1 1 60 X 74295777 74295796 TTCTTGCAGAGAAAGTGGAG 58 74295819 74295837 GTGTAGTCTATTTCCGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686074 ENSRNOG00000030364 ENSRNOT00000051911 1 1 1 60 18 24312808 24312826 CCAAGCTCTCCAAGATACG 58 24312766 24312785 TTAATGACAGTGAGGACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.3 ENSRNOG00000051053 ENSRNOT00000077001 3 1 1 86 X 73903976 73903994 TAGCAAGTGTTCTCCCTCC 59 73904042 73918963 CATGCTAAGGTGTTACTGTGC 60 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000087569 3 1 2 119 15 60011061 60014585 TTAGGAGTAAGCCCATCTGC 59 60009947 60009965 TTAACGTGACTGCAGTCCA 59 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 2 2 2 92 10 35713753 35714015 CATTAAAGAGAAGAAGGAGTGC 57 35713682 35713700 CCATCACAAATCACGTTGG 57 NA Rattus norvegicus 81 Rn60_X_0748.2 ENSRNOG00000051293 ENSRNOT00000076241 3 1 1 60 X 73977378 73977396 CCTTGTAACACAAGGAGGC 59 73977418 73977438 AGGATTGTTGGTAACTTGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itsn2 ENSRNOG00000046741 ENSRNOT00000074150 1 1 1 80 6 30163613 30164762 AACTGAAGTGTGGGAATATGGA 60 30163554 30163574 AGAGGAAGAGGTTGTTGAGAC 60 NA Rattus norvegicus 81 Map2k4 ENSRNOG00000003834 ENSRNOT00000005293 1 1 1 80 10 52198952 52201588 TCACATTGTACGAGTTGGC 58 52198890 52198908 TCACCACTTGTGTTAGCTG 58 NA Rattus norvegicus 81 Hmgb2 ENSRNOG00000013167 ENSRNOT00000017635 3 1 1 81 16 36079017 36079384 AGATGGAAGACCATGTCTGC 60 36078955 36078973 TCTCCCTGTCATAACGAGC 59 NA Rattus norvegicus 81 Gnptg ENSRNOG00000024455 ENSRNOT00000029674 2 1 1 80 10 14593523 14593541 TCACGGGAGGTACAAAGAC 59 14593373 14593479 AGAGTGGGTGGTTTCTGTG 60 NA Rattus norvegicus 81 Zbtb42 ENSRNOG00000037562 ENSRNOT00000030879 1 1 1 208 6 137243241 137243259 GGAAAGCTTGCAGAACGAG 60 137243858 137243876 TGGAAGTAGACACTGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cpa2 ENSRNOG00000028092 ENSRNOT00000029608 1 1 1 80 4 57868420 57871390 TAATGAGCTGGATGAAGTGG 57 57871431 57871451 ATGGGTCCCACTTTATAACTG 58 NA Rattus norvegicus 81 Rn60_X_0719.3 ENSRNOG00000051165 ENSRNOT00000075990 2 1 1 60 X 70946039 70946060 CTACCACTTTCAGAAGTTGGTC 59 70946080 70946099 CTTTCTCTTGAGCTTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol4 ENSRNOG00000014775 ENSRNOT00000041125 1 1 1 80 18 13881347 13881367 TCTGACCTTAGCTCCAATCTG 59 13787500 13881305 TGCAGCAGAGTCATCATCC 60 NA Rattus norvegicus 81 Ighg ENSRNOG00000030332 ENSRNOT00000006975 3 1 1 81 6 139141166 139141184 TTCAGATGCAAGGTCACCA 59 139140987 139141122 GAACTTGTGTTCTGCCTTCG 60 NA Rattus norvegicus 81 Col11a2 ENSRNOG00000000463 ENSRNOT00000085547 3 1 1 81 20 3857133 3857153 GGGTGTTCTGCAACTTTACAG 60 3857195 3857351 GAGTCCACGTAGGAGAACTG 60 NA Rattus norvegicus 81 Arhgap15 ENSRNOG00000031168 ENSRNOT00000049884 2 1 1 80 3 29010749 29010768 TGAACGAGAACATTCCACAG 58 29010811 29039193 CCATCAACTTCTAGGCCTC 57 NA Rattus norvegicus 81 Krtap15-1 ENSRNOG00000049399 ENSRNOT00000072546 2 1 1 60 11 28780555 28780576 CTACCTACAACTCTTTCTACCC 57 28780597 28780615 TGCTGGAAGTTCTTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 3 1 1 84 4 153784944 153785589 CAGTAGTAGACGAGGTGCG 60 153785637 153785655 TTAGCTGCATCCTCCTTCC 59 NA Rattus norvegicus 81 Coa4 ENSRNOG00000025385 ENSRNOT00000038764 3 1 1 78 1 165549350 165549368 TTACTGCCTACAGACCCTG 58 165549410 165551294 TGACATCTTGAGGAACCCG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 AABR07061614.1 ENSRNOG00000032820 ENSRNOT00000048672 3 1 1 80 4 136078837 136078857 TGAGGAAGAAGTAGAGGAACC 59 136078898 136078955 GCTCCTCTAAATGTTCCGGA 60 NA Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 3 1 1 85 6 138631745 138631764 CACCCTATACCTGCAAATGG 58 138631636 138631698 GCTGGTCACTAGTATCTGTG 58 NA Rattus norvegicus 81 Irgc ENSRNOG00000024257 ENSRNOT00000030900 1 1 1 116 1 81293284 81295274 CATCTGAGCCACTGAGGAG 60 81293186 81293204 ATGAGGATGGTGGTCTCCT 60 NA InUTR Rattus norvegicus 81 LOC691952 ENSRNOG00000037178 ENSRNOT00000056119 3 1 1 81 3 114129853 114131240 GACACCCTGAGAATCTATCAG 57 114131281 114131301 CTACTGCAGCAAGATAGTAGG 58 NA Rattus norvegicus 81 LOC100912537 ENSRNOG00000047112 ENSRNOT00000074429 2 1 1 80 1 259100050 259100480 TGACCTAAGTCACTCTATGACC 59 259099991 259100009 CCAAACTGTACTTCGTGCC 59 NA Rattus norvegicus 81 Pcdhga9 ENSRNOG00000030352 ENSRNOT00000044434 2 1 1 60 18 30885872 30885890 CAGGCAGATCCACTATTCC 57 30885912 30885932 GATGTTTCCCACTGTATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf14 ENSRNOG00000009288 ENSRNOT00000041551 2 1 1 80 15 110546687 110550250 CCAATTCCACTCTGTTCAACC 60 110546627 110546648 CTATGTACAACCCTGTCTTCAC 59 NA Rattus norvegicus 81 Cbr1 ENSRNOG00000047848 ENSRNOT00000042283 1 1 1 88 11 33813364 33813867 TCGCCTTCAAAGTTGTTGAC 59 33813918 33813936 GCAGACATCTTGGGTACCA 59 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 1 1 1 61 10 74386514 74386532 GAGAGGAGTTTGACCGACC 60 74384409 74386493 TCTCCTGATTTAGGTAAGGAGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561118 ENSRNOG00000034060 ENSRNOT00000040561 2 1 1 60 10 76274688 76274706 CTGTTCAAGGATGACCAGC 59 76274646 76274664 TAGTGAAGCCACAGTCACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3b5 ENSRNOG00000014908 ENSRNOT00000019994 3 1 1 60 1 7102010 7102028 AACTACTTCGCCATTGCTG 59 7102052 7102070 TCTCCATCAGGTTGAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf11l1 ENSRNOG00000057589 ENSRNOT00000080048 2 1 1 82 5 129095004 129112782 CCATATCAGGAACAAGTTCCTG 59 129094943 129094961 TCCTCTTCAGTCAGCTGAG 58 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054,ENSRNOT00000030470 3 2 2 80 6 101856945 101856965 GAATACCACCGGTGTATACTG 58 101857006 101858186 GCTGCTCATCTGATTACCTG 59 NA Rattus norvegicus 81 Pcgf1 ENSRNOG00000008360 ENSRNOT00000011173 1 1 1 80 4 113912372 113912390 TTGACCACTCTAAAGCCCA 59 113912434 113912670 TGTCTTTGCCAGAACTCAG 58 NA Rattus norvegicus 81 Duox1 ENSRNOG00000033348 ENSRNOT00000046843 1 1 1 80 3 114272031 114272225 GGTCTTCATGAAAGGCTCC 58 114272269 114272287 GAGATGAGACCATTCCCGT 59 NA Rattus norvegicus 81 Tob1 ENSRNOG00000002828 ENSRNOT00000003780 1 1 1 60 10 81914764 81914782 GAATGTTCCCAGGTGACAG 58 81914804 81914824 TCAAAGGCATTACTGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc3 ENSRNOG00000012409 ENSRNOT00000016582 1 1 1 80 5 60870664 60870683 CAGCTTCTTTGTCCTACCTG 58 60868836 60870624 CATAGATGAGATCTCCAACCTG 58 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 1 1 1 73 1 81844129 81845855 TAAGCTTGTGCTCTTTGGC 59 81844074 81844092 AAGGGAAAGAGACACCACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362216 ENSRNOG00000017557 ENSRNOT00000023592 1 1 1 84 9 93064619 93068001 AGTTCAAGAGCACCTCCAG 59 93068049 93068067 ATTCCCACGGTCTTCACAG 60 NA Rattus norvegicus 81 Rpl39l ENSRNOG00000032300 ENSRNOT00000051564 2 1 1 76 10 5533467 5533485 TCCACTGGCTTAGACTCAC 59 5529908 5529926 AAGGTCTTGTGAGAAGCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000026719,ENSRNOT00000087595,ENSRNOT00000081301,ENSRNOT00000026707 3 5 5 80 9 97937021 97938196 TTGGTCACAGACAGATAAACAC 59 97936962 97936980 TCACTGGCTTCATTGTGGT 60 NA Rattus norvegicus 81 Ankrd32 ENSRNOG00000040279 ENSRNOT00000018457 3 1 1 81 2 4101304 4101999 CAGAGTTCCTTGAGTTAAACCA 58 4101244 4101264 CATGACGATTCTCCTTCTGAC 59 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 3 2 2 99 8 49299517 49299535 GAGGAACTGGTACTGGTGG 59 49298212 49298960 TTTCGGATGGGCTCATAGTC 60 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 3 1 1 80 3 12502824 12502843 ATTCATCCCAGATAGGGCAC 59 12494594 12502783 TCTTGTTTAGTGTGGTTCGAC 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 3 3 3 81 14 763273 763293 CATCAGAAACAAACAGCAGAC 58 762048 763233 CCATATGTACTGTCTCATTGGA 58 NA Rattus norvegicus 81 Slc15a4 ENSRNOG00000000962 ENSRNOT00000001277 3 1 1 80 12 32754388 32761728 CGGATCAGGTCAAAGATCGA 60 32761769 32761789 TTGCTCCCAAATTAATGCTCC 59 NA Rattus norvegicus 81 Samd11 ENSRNOG00000020342 ENSRNOT00000027564 2 1 1 80 5 173675489 173676991 CATCCCTAGCCACGATCTG 60 173675427 173675448 TGTACTTCCAAACTACTGGGAC 60 NA Rattus norvegicus 81 Hpca ENSRNOG00000006979 ENSRNOT00000009153 2 1 1 80 5 147302998 147303016 CTTCAGCATGTACGACCTG 58 147296328 147302954 ATCTTGTAAATGGCCTGCA 57 NA Rattus norvegicus 81 Cnn2 ENSRNOG00000043044 ENSRNOT00000065093 3 1 1 86 7 12785640 12785658 TGGATAGAAGGACTCACGG 58 12785707 12786585 GTTCATGAGTGTGCATAGGA 58 NA Rattus norvegicus 81 Pck2 ENSRNOG00000018536 ENSRNOT00000025260 2 1 1 80 15 34221723 34221742 AAACTGAACAAGGAGTCCTC 58 34221783 34221881 GATGGCTTCTTGTCTATTGTG 57 NA Rattus norvegicus 81 Rhot2 ENSRNOG00000019930 ENSRNOT00000027083 3 1 1 80 10 15207651 15207750 AGGCTATCACAGTTACCCG 59 15207589 15207608 ACACCTTACACATGAGGACG 60 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 3 3 3 80 6 34056246 34056352 GAGCCATTTCTTATCAAGTGG 57 34056393 34056412 CTACCAGACAACTGAGAACG 58 NA Rattus norvegicus 81 LOC103692716 ENSRNOG00000059714 ENSRNOT00000086310 2 1 1 80 6 135110208 135110229 ACATCAAGTTGTATGTTCGCAG 60 135110001 135110172 CTCTGATGAAATTCAGATACTCGG 59 NA Rattus norvegicus 81 Muc13 ENSRNOG00000001794 ENSRNOT00000002444 2 1 1 80 11 70195819 70198893 CTATTCCCAACAAGATCGGT 57 70195758 70195777 GTGCATTGTAAACCATTCCG 58 NA Rattus norvegicus 81 Notch2 ENSRNOG00000018835 ENSRNOT00000025718 3 1 1 80 2 200308795 200308930 TGTTGTCAGTGAATCGGAG 58 200308973 200308992 AGGAACAGGATAATGACCAC 57 NA Rattus norvegicus 81 Smlr1 ENSRNOG00000047821 ENSRNOT00000071726 3 1 1 121 1 20856272 20856292 GCGATCTTCTTACAGGAACTC 59 20856374 20877360 TGTTCTTCAACTGCCATCAG 59 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 3 1 1 81 10 48609446 48609466 CTGCATTTCAACTCTAGAGGG 59 48609506 48623688 AGTATTGGCTCTTTCTTCTGAC 58 NA Rattus norvegicus 81 Kcnv2 ENSRNOG00000012566 ENSRNOT00000016757 3 1 1 128 1 245398388 245398408 GATGCTCTTCATCACTATGGG 58 245398498 245412858 GTAGAGATGCTTACCGCAG 58 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 3 2 2 80 15 33371818 33371838 GGGTGTTCCTGTATACTTCCT 59 33371290 33371780 AGAGTTAGGGACTCAATGAAGTC 60 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 3 2 2 97 7 12517651 12517671 AGCAAGATCTGTGTAAATGGG 58 12516847 12517593 CATTTGATGGCATTTCCCAG 58 NA Rattus norvegicus 81 Nat2 ENSRNOG00000049498 ENSRNOT00000044198 2 1 1 80 16 23962125 23984534 AATTGACTGGAAACCATGGAC 59 23962065 23962085 TTCCAAGTCCAGTTTGTTCCT 60 NA InUTR Rattus norvegicus 81 Nsd1 ENSRNOG00000016680 ENSRNOT00000060928 2 1 1 80 17 9895311 9897590 TGCATAAGGTAAGTTCCCGA 59 9895250 9895268 CATCCACCTGCTTGTTCTG 59 NA Rattus norvegicus 81 Tssk3 ENSRNOG00000008693 ENSRNOT00000011887 1 1 1 95 5 147690995 147691662 GCCAGAAGAGTTTATCCAGAG 58 147690920 147690938 TCCAGCATCTCATACACCC 59 NA Rattus norvegicus 81 AABR07025743.1 ENSRNOG00000033638 ENSRNOT00000041833 3 1 1 60 16 47756696 47756716 AATGAATCCTCAGAAGATGGG 58 47756654 47756672 AAGTCTCTGATGAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800,ENSRNOT00000081373 1 2 2 80 15 39645005 39645025 TTGGTCAAACAAGTGGTTGAG 59 39645063 39648854 CCAAGCAAATAACTCTCCATCAG 60 NA Rattus norvegicus 81 Cramp1l ENSRNOG00000024635 ENSRNOT00000022050 3 1 1 80 10 14345782 14345801 ATTACAACCACGGAACAACC 59 14344792 14345740 AGCTCCACAATCATCCTGAG 60 NA Rattus norvegicus 81 Timp1 ENSRNOG00000010208 ENSRNOT00000013745 2 1 1 80 X 1368541 1368561 TGATAGCTTCCAGTAAAGCCT 59 1366692 1368500 CCCTTATAACCAGGTCCGAG 59 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 2 3 3 80 1 275866081 275866099 TGCCACAACATCAAAGCTC 59 275862946 275866040 AAGCTTGTGAATCAAGGTACTG 59 NA Rattus norvegicus 81 Polrmt ENSRNOG00000024879 ENSRNOT00000039232 3 1 1 82 7 12850547 12850665 CATGATGAACGAGGTATGCC 59 12850710 12850728 TCTCCAGGAACTTAGCCAG 58 NA Rattus norvegicus 81 RGD1564308 ENSRNOG00000038819 ENSRNOT00000059317 2 1 1 80 16 49492744 49492763 CAGGGACAAATATCAGCCAC 59 49492805 49492915 ACATTGGCATAACCGTATCC 58 NA Rattus norvegicus 81 Csrp1 ENSRNOG00000008937 ENSRNOT00000011991 1 1 1 80 13 52563741 52563761 AGACAGTCTACTTTGCTGAGG 60 52563803 52568523 TCTTGCAAACCATGCACAG 59 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 3 2 2 81 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Celf4 ENSRNOG00000014503 ENSRNOT00000061151 2 1 1 82 18 17702197 17702216 CTGTAACCTGCTCATCTACC 58 17698990 17702152 CCACAAACTCGAAAGGGAG 59 NA Rattus norvegicus 81 Smyd4 ENSRNOG00000026783 ENSRNOT00000029866 1 1 1 80 10 62221043 62221063 ACTGAGGACATTTCATTGTGC 59 62221102 62223782 GTCTTTAAGACATGCTTCATGC 58 NA Rattus norvegicus 81 Reg3b ENSRNOG00000006151 ENSRNOT00000008212 1 1 1 81 4 109468557 109468577 CATCCATGGTCAAGAACACTG 59 109468620 109469212 TTGGGTTCTCCACCAAGAG 59 NA Rattus norvegicus 81 Olr1204 ENSRNOG00000051111 ENSRNOT00000076868 2 1 1 60 8 40489419 40489437 AATGTAACAATGCCCACCC 58 40489457 40489479 GGATATTGGAAAGGATCAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910109 ENSRNOG00000031244 ENSRNOT00000051207 3 1 1 60 18 4371262 4371280 ACAGGTGAACTCGGAAGAC 59 4371220 4371240 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 3 2 2 88 19 949940 951687 TTCTCCACCAGGCTATGAG 59 949870 949888 CTGTCATCGAGTAGGGTGG 59 NA Rattus norvegicus 81 Reep1 ENSRNOG00000008481 ENSRNOT00000064772 1 1 1 85 4 99681305 99681326 GTCAAATGGATGATGTACTGGA 58 99681372 99696931 AATGGAAACCAGCAAAGGA 58 NA Rattus norvegicus 81 Glt1d1 ENSRNOG00000000961 ENSRNOT00000064526 1 1 1 80 12 32698466 32709794 CAGCAATCAGAGATCGACC 58 32698404 32698422 AGGATCCTTCACTGGTCTG 58 NA Rattus norvegicus 81 AC094516.1 ENSRNOG00000057064 ENSRNOT00000082938 1 1 1 60 15 28128238 28128259 GTAACGAGATGATGAAGAGCAG 59 28128280 28128298 AAGGTGTTCATGGACTTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680656 ENSRNOG00000042062 ENSRNOT00000065877 3 1 1 61 5 173140122 173140140 CAGCTATGCAGGAGATCGT 59 173140165 173140183 CAGCATGACACAGATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir676 ENSRNOG00000061112 ENSRNOT00000090243 1 1 1 60 X 70207031 70207049 GACTCTGCAACCTTAGGAC 58 70207073 70207091 ATAGCTCGACAAGCTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt3 ENSRNOG00000018958 ENSRNOT00000025669 2 1 1 81 19 11324920 11325779 CGAACTGCAAGAAGAGCTG 59 11324857 11324875 TCTTCGCCTTTGCAAACAC 60 NA Rattus norvegicus 81 AABR07058968.1 ENSRNOG00000047477 ENSRNOT00000074622 1 1 1 80 7 145574296 145574315 TCTGATGGAACTAGTGATGC 57 145573192 145574254 AGCCAATTCAATCAATGCTG 57 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895 1 2 4 80 20 3827670 3827864 CATACTGTTTAACCCAGACGC 59 3827905 3827924 AGTGAGGCATACACCTTCTC 59 NA Rattus norvegicus 81 Olr1610 ENSRNOG00000047419 ENSRNOT00000016721 2 1 1 60 15 27076763 27076782 TGCAGGCCTTTACATTACTC 58 27076722 27076742 CCAACAACATCACATAGCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564688 ENSRNOG00000038610 ENSRNOT00000058917 2 1 1 60 11 72109566 72109584 CATGTTTGTGGTGGGTGTG 60 72109524 72109543 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp1 ENSRNOG00000003977 ENSRNOT00000005383 2 1 1 90 10 16972104 16972387 CTTTATAGACTCCATCAAGGATGC 59 16972436 16972454 GTAAGCAAGGCAGATGGTG 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 2 2 2 80 2 266146429 266146447 TGTTTGATGGACAAGCCCT 60 266146491 266153478 CAGTGCGGATGAATCTCCT 60 NA Rattus norvegicus 81 Ecd ENSRNOG00000042253 ENSRNOT00000008553 3 1 1 80 15 4414610 4417897 GGAATGACTACTTTAAGGGACTG 59 4417935 4417955 GCTGGAAATAGTTCTTTGCCA 59 NA Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000043306,ENSRNOT00000077017 3 2 2 60 10 70424381 70424399 AAGAAGTTCCTGCAACCTG 58 70424339 70424359 TGTCATCATAGTGACCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1414 ENSRNOG00000026714 ENSRNOT00000029524 2 1 1 60 10 43912083 43912101 CTGACTCTTTCCACACTCC 58 43912041 43912062 GTGAAGATGGTGTTAATCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k2 ENSRNOG00000014089 ENSRNOT00000060996 2 1 1 80 18 25019119 25023475 AGAGACATCAAAGGAGCGA 58 25023519 25023537 AAGTCGTTTGCTAGCTCCA 59 NA Rattus norvegicus 81 Sap130 ENSRNOG00000016773 ENSRNOT00000022761 1 1 1 80 18 24449137 24458708 CAAATATCCCAGTTGCTAAGGT 59 24458749 24458767 TCTCGGAAGGGTAATCAGG 58 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 3 2 2 80 10 104533424 104533444 TGCCAAACACAACATTATCCC 60 104533481 104533789 GGGAAATATTTATGGAGCTTCTCG 60 NA Rattus norvegicus 81 Smim22 ENSRNOG00000042344 ENSRNOT00000066754 1 1 1 112 10 10767363 10767381 AGGAAGCAGTGTGAGTTCC 60 10766970 10767288 CATCTCAGCTACCTCCTCTC 59 NA InUTR Rattus norvegicus 81 Gp1bb ENSRNOG00000046981 ENSRNOT00000040954 3 1 1 201 11 86521035 86521053 AGTAGGCCTCCATCCTCTC 60 86521448 86521467 CAATTCTGTAGTGTCGGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lin28a ENSRNOG00000060320 ENSRNOT00000077165 2 1 1 80 5 152235374 152235393 TTCTGTATTGGGAGTGAGCG 60 152233362 152235332 ACAGTTGTAGCACCTGTCTC 60 NA Rattus norvegicus 81 Olr1565 ENSRNOG00000048434 ENSRNOT00000044043 1 1 1 60 11 85159328 85159346 ACCATCCTGACACCTACAC 59 85159369 85159388 TGAGGACATCCTTATTCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1569 ENSRNOG00000050293 ENSRNOT00000057990 1 1 1 60 11 85313526 85313547 ATGCCCTTCATATTCCTTACTG 58 85313487 85313507 GGAACATCACAGAAGAAATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625,ENSRNOT00000073341 3 2 2 80 4 156993829 156993850 GGAGTATCTGGAACAGTCTGAG 60 156993353 156993788 TCATCGTACCATCGGTCAG 59 NA Rattus norvegicus 81 LOC100360654 ENSRNOG00000045963 ENSRNOT00000047422 1 1 1 60 17 42168420 42168439 CTAAGAGGCGAAACACTACC 58 42168458 42168480 CTTCGGTAGACAATCTTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prom2 ENSRNOG00000014710 ENSRNOT00000020354 3 1 1 80 3 120100240 120100259 TCTGGAAGGTTCTACAGCTC 59 120098370 120100200 GCTGAAGCTTATGGGTATACTG 59 NA Rattus norvegicus 81 Crtap ENSRNOG00000009878 ENSRNOT00000074238 2 1 1 80 8 122398416 122401659 TACTTCAAGGCCAATGACC 57 122398354 122398372 CATCATCTCGTCCTCAGGA 58 NA Rattus norvegicus 81 Xpot ENSRNOG00000007088 ENSRNOT00000009645 2 1 1 80 7 63708723 63708743 GTTCTTTGAAACTGTCGTTCG 59 63708217 63708684 AAGAAAGCCATTAGTACACAGG 59 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 3 2 2 80 20 44879986 44880007 GAGTACCTGTGAGTTAGAAGTG 58 44880048 44881293 TTTCCACCAATTTGAGCCT 58 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 3 2 2 80 4 24628277 24628295 TCAGACTGGATCCTACAGC 58 24628339 24629459 TGTCGGAATGAACTCTGCT 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 1 2 2 80 10 107307919 107310249 GATCACCAAGGATGTTGGC 59 107307857 107307875 TACATGACAGGGTCTCCAC 58 NA Rattus norvegicus 81 Trpm4 ENSRNOG00000020714 ENSRNOT00000041513 3 1 1 81 1 101298703 101298721 TCCTCATCGTCTTCTTGCT 58 101295618 101298660 ACTTTGTTGAAGGTGTAGCTG 59 NA Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903 2 1 2 86 6 26836276 26836422 GCTAGTCAGGATGATCACG 58 26836472 26836490 TGATAGAGGACCACAAGCA 58 NA InUTR Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903,ENSRNOT00000011373 1 2 2 83 6 26836482 26836500 CCTCTATCACTACGTGGCA 59 26836547 26837210 CTATGTCCTGGAAGCCTGG 60 NA InUTR Rattus norvegicus 81 RGD1565317 ENSRNOG00000023182 ENSRNOT00000017230 2 1 1 60 10 66509171 66509190 CCCAGATCAAAGCTCATGTG 59 66509213 66509231 AGCACGACTTGATCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf3c6 ENSRNOG00000000586 ENSRNOT00000000716 1 1 1 95 20 45353034 45353156 ATATGAAGATACTCTTGGGACCTG 60 45350428 45350447 CATTTGTACTTCAGCACCGT 59 NA Rattus norvegicus 81 Lbx2 ENSRNOG00000008466 ENSRNOT00000011189 3 1 1 171 4 114784621 114784639 ACTTTCCAGGGCCATTCTC 60 114785842 114785862 CCAAGTACTTCTGGAAGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Zfp280c ENSRNOG00000006797 ENSRNOT00000044435 1 1 1 80 X 135372273 135372292 TAGACCGTATGGCTAAACAC 57 135372069 135372233 CGGTTCTTTCAGTAACATTCTC 58 NA Rattus norvegicus 81 Hsd3b1 ENSRNOG00000019441 ENSRNOT00000026306 3 1 1 89 2 202343837 202343855 CTGTTGTCATCCACACTGC 59 202342548 202343787 TCTGGGTACCTTTCAGATTGAC 60 NA Rattus norvegicus 81 Mettl25 ENSRNOG00000027451 ENSRNOT00000038144 3 1 1 80 7 47865621 47885054 TATGGCATCAGCAAATGTGAG 59 47865561 47865581 AGACACTCTGACATACTCCAG 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 1 1 4 80 4 163757492 163757512 GATCCAATGTAAACAAGCCTG 58 163754531 163757452 TGAAGGAACTTCAGTTCATCG 58 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 3 1 1 85 1 78808911 78810283 GAGACCCAAGTCCTTAGGC 60 78810332 78810350 GAGCTGAGAAGGATCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Acadm ENSRNOG00000009845 ENSRNOT00000013238 3 1 1 80 2 260143120 260145819 TTAGCTTCGAGTTGACGGA 59 260143058 260143076 CGACCGGGATTATTTCCTC 58 NA Rattus norvegicus 81 AC229945.1 ENSRNOG00000056748 ENSRNOT00000074379 2 1 1 80 5 79894287 79894310 GAGATTTCACCTCACATGCG 59 79894226 79894245 TCCTCTTTCTCCACATCCTC 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000078822 3 1 2 109 18 25962966 25963096 TCCCTGAGGTCAAGAAACTC 59 25963168 25963186 CATGTGGACAAAGTTGGCT 59 NA InUTR Rattus norvegicus 81 Ampd3 ENSRNOG00000018262 ENSRNOT00000024933 3 1 1 80 1 175622014 175622854 ACCTCTTCCTTAAATACGTGAC 58 175622894 175622913 TCTTGTCTGAGAACATGTGG 58 NA Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 1 1 1 60 5 120168486 120168504 GCTCAGTTATCACAGTGCT 58 120168444 120168467 CTTCAGTTATCACAGTACTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 3 1 1 60 5 120168488 120168506 TGGCTCAGTTATCACAGTG 57 120168446 120168467 TCAGTTATCACAGTACTGTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem191c ENSRNOG00000001864 ENSRNOT00000002546 3 1 1 115 11 87977020 87977039 AACATCCCGAGCTATTCGAG 60 87976845 87976942 GATTGTGTTGCTCCAGGTC 59 NA Rattus norvegicus 81 Cd163l1 ENSRNOG00000018978 ENSRNOT00000049269 1 1 1 80 1 212701027 212701173 TCTGTTCAGGACTCCAAGAC 59 212701214 212701234 CATTCAGGGAAATCTCTACGC 59 NA Rattus norvegicus 81 Hic2 ENSRNOG00000051458 ENSRNOT00000079595 2 1 1 93 11 87994883 88016685 CACATGAGGTAACCAGGCT 59 87994808 87994826 CAGAAACCATGTGAGCAGC 60 NA InUTR Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484,ENSRNOT00000075078,ENSRNOT00000071741 1 3 3 81 1 217428399 217459834 CTTTGATGCTGCCAGTGAC 60 217459879 217459897 CACAAATCCAAAGCCCTCG 60 NA Rattus norvegicus 81 Pigh ENSRNOG00000010914 ENSRNOT00000014775 3 1 1 80 6 102268136 102268154 GGCAAAGAAAGTACCACCT 58 102266271 102268094 GACCTTCTGCATGTAAATAGC 57 NA Rattus norvegicus 81 LOC100360611 ENSRNOG00000033115 ENSRNOT00000051772 2 1 1 60 11 82416229 82416250 CAAGTTAAAGGCAAGATTCTGG 58 82416269 82416289 AGTGCTTGATGTACTCAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560687 ENSRNOG00000004662 ENSRNOT00000042108 2 1 1 60 7 15386241 15386259 ACCTCTGTGACTTCTTGGA 58 15386282 15386301 ATCTTCTTGCTGAGCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1461 ENSRNOG00000047410 ENSRNOT00000040081 1 1 1 60 10 45160052 45160070 TACTTGCTCCTCTCACCTG 58 45160092 45160112 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd2 ENSRNOG00000013840 ENSRNOT00000018890 1 1 1 80 1 261286525 261288169 CACCTGTGATGAGTTCCGT 60 261288209 261288231 TCCAGAAGTTTCTCCAGTATCTC 59 NA Rattus norvegicus 81 Themis ENSRNOG00000014979 ENSRNOT00000020102 1 1 1 80 1 17337440 17337460 TTTGTGAGGGTGATATTGGAG 58 17299907 17337399 TGACCTTAAAGAGACCTGGA 58 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968,ENSRNOT00000048752 3 2 2 80 18 27403387 27403405 TATGCCAATGTGTTCCTGC 59 27402832 27403343 CAAATCCATAGGCCTCTGC 58 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 3 2 2 83 10 104618317 104618337 CTGATGAAATTCCTGGAGGTG 59 104617291 104618272 CAGTAGAGTCAGGAGGCTG 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 1 2 2 80 17 9692833 9693020 CAAGCCTCCAGAAATCGAC 59 9693064 9693082 TAATCACCACCCTCGAAGC 60 NA Rattus norvegicus 81 Adi1 ENSRNOG00000008950 ENSRNOT00000011951 3 1 1 82 6 47940338 47942971 ATTGGAAGCTAGATGCGGA 59 47943015 47943035 ATCCATCCATGAGTAGTTCCT 58 NA Rattus norvegicus 81 Ak5 ENSRNOG00000046947 ENSRNOT00000072048 2 1 1 80 2 257850807 257850829 CAGAGCTGATAGAAGAGTATGAG 58 257849391 257850767 TTCCTGGACCACCTATGAC 58 NA Rattus norvegicus 81 Cpsf6 ENSRNOG00000005927 ENSRNOT00000008193 2 1 1 80 7 60401828 60401847 TCATGAATAGAAATCGGGCA 57 60400670 60401785 CACTCCCATAATCACCAGC 58 NA Rattus norvegicus 81 Ogfod2 ENSRNOG00000001081 ENSRNOT00000001433 1 1 1 89 12 37909548 37909936 ACTCTTGGAGGAGCTTGAG 59 37909477 37909495 TAAGAGCTGGCGATGACAG 60 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000050888 ENSRNOT00000065282 2 1 1 80 7 13883717 13883738 TCTTGGAGTCCAAGACTAAGTC 59 13883777 13884457 TTCCATGTTCATCCTTAGCCA 60 NA Rattus norvegicus 81 Cct6a ENSRNOG00000000923 ENSRNOT00000001227 1 1 1 80 12 30495241 30495261 CTCTGAACTCCTTTGATGACC 59 30494925 30495202 TCTCCTCACCCAATGTATACTC 59 NA Rattus norvegicus 81 Rn60_X_0719.1 ENSRNOG00000051060 ENSRNOT00000076595 3 1 1 60 X 71042867 71042885 AGACCTACAGCTACCTGAC 58 71042825 71042846 TAAGGAGACTTGATGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065217.2 ENSRNOG00000042542 ENSRNOT00000039910 3 1 1 60 6 115769724 115769742 GTATCCACTAGTGCTGCCA 59 115769682 115769703 GGAAGACCATGTTAGTAAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Set ENSRNOG00000034241 ENSRNOT00000051397 2 1 1 196 19 58419986 58420638 CTAAGTCTGGAAGCCATGG 58 58420797 58420816 GCTTGTTCATTAAGCCTGTC 58 NA InUTR Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 3 1 1 80 12 38323505 38323525 CTAACAGTCCAAAGAAGCAGC 60 38323563 38324501 TCTCTATATCTGAGTCAAGCTCC 59 NA Rattus norvegicus 81 Sct ENSRNOG00000017873 ENSRNOT00000024094 1 1 1 90 1 214265052 214265174 TACAGGATTGGCTTCTGCC 60 214264980 214264998 TCTGAATGGTCGACAGCAG 60 NA Rattus norvegicus 81 Gnpat ENSRNOG00000019205 ENSRNOT00000026617 3 1 1 80 19 57636399 57637135 ACACTCAGGGACTTTGAGG 59 57637179 57637197 GAGGATGATGTCCTTCCCA 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000001869 3 1 3 82 12 21745298 21745319 CGTAGTCAATTCAGTTTCTACG 57 21740526 21745258 TACTCATAGAAGACTTCCACCT 58 NA Rattus norvegicus 81 Cenpv ENSRNOG00000003086 ENSRNOT00000004127 2 1 1 80 10 48848910 48855750 CTTCAAACTCCTGAAGGGTG 59 48848849 48848868 CTCTTACAGAAGGTGTGCTG 58 NA Rattus norvegicus 81 B3gnt5 ENSRNOG00000046258 ENSRNOT00000071848 3 1 1 82 11 84930939 84931095 AGTTTGTTGTACTCGGCTC 58 84930875 84930893 TCACAGCCAATCTTAAGGG 57 NA InUTR Rattus norvegicus 81 Rabgap1 ENSRNOG00000009402 ENSRNOT00000013378 3 1 1 80 3 21812442 21813687 AGATCCAGGACTTGGAACAC 60 21813729 21813748 GTGTTCGGTTAAACCAGGTC 59 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000046368 3 1 2 60 2 95079026 95079046 ACATGAACGCCATAGAAATCG 59 95080570 95080590 TGAAGACTTTCAGGAAGAACC 58 NA DesignNoJunction Rattus norvegicus 81 Mtnr1b ENSRNOG00000008972 ENSRNOT00000011883 1 1 1 91 8 14373621 14373639 CATTGTCACCACAGCTGTG 60 14363109 14373567 ATAAATTACCTGCGTTCCGC 59 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 3 2 2 81 2 203828156 203832078 CATCACAGCCCTTGAAACG 60 203832123 203832141 CAAGTCAAAGGAGTCGCTG 59 NA Rattus norvegicus 81 Cdc25c ENSRNOG00000024008 ENSRNOT00000037368 1 1 1 80 18 27540260 27540278 GCTAGAAGACCAAGAAGGG 57 27536343 27540216 TTCAGACTTAAGCCCTTGG 57 NA Rattus norvegicus 81 Hyou1 ENSRNOG00000010944 ENSRNOT00000044613 1 1 1 80 8 48704632 48704811 CACATGGCACAGATTGAAGG 60 48704854 48704872 ACACAGCTCCTCAAACTCC 60 NA Rattus norvegicus 81 Nme5 ENSRNOG00000020118 ENSRNOT00000027244 1 1 1 80 18 27363710 27363729 ATTTGTACGTAGCACCAACC 59 27357954 27363669 CAAGCCAGATGTAAGGATCTG 59 NA Rattus norvegicus 81 Cldn17 ENSRNOG00000027691 ENSRNOT00000032663 3 1 1 60 11 28477808 28477826 CGTTCTGATTCCAGTGTCC 58 28477766 28477785 GGTTGGGTCGTAGAAATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim34 ENSRNOG00000042686 ENSRNOT00000055210 3 1 1 80 1 169437533 169438074 AATGTCAGGAGAATCTCCAGG 59 169438113 169438134 TGATGTCAGCTTCAAATGTCTC 59 NA Rattus norvegicus 81 Vom2r15 ENSRNOG00000029458 ENSRNOT00000042466 2 1 1 80 1 62668492 62676245 AGGTTCACAGATGCTGACC 60 62668430 62668448 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Ebf4 ENSRNOG00000007408 ENSRNOT00000028816 1 1 1 80 3 122881154 122881173 TAGTAGAAGTGACCCTCTCC 57 122881216 122882621 CATTCAGGGCTGTGTAGAC 58 NA Rattus norvegicus 81 Uchl1 ENSRNOG00000002343 ENSRNOT00000003248 2 1 1 80 14 43137886 43140369 GCTGGAATTTGAGGATGGA 58 43137824 43137842 CACTTGGCTCTGTCTTCAG 58 NA Rattus norvegicus 81 Fam13b ENSRNOG00000020384 ENSRNOT00000027663 3 1 1 80 18 27238144 27238729 AAAGAAATAGCAAGCCCTCCT 60 27238084 27238107 GTAACTTTGTAAGCTCTGTCATCC 60 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 2 1 1 82 7 13108643 13108664 GAATCCTTCCCAGAAGAATCTC 58 13108376 13108603 TGTTCCATTTGTAGCCTATAGC 58 NA Rattus norvegicus 81 Tsga13 ENSRNOG00000011108 ENSRNOT00000015134 1 1 1 80 4 58206919 58208113 GTCCATCCAAATATGGCCC 58 58206857 58206877 GGTCTTCTTCCTTTGAGTCAG 58 NA Rattus norvegicus 81 Pcdh7 ENSRNOG00000012367 ENSRNOT00000049245 3 1 1 85 14 55078425 55078446 CAGGAGACAACATTTCAATTGG 58 55072609 55078379 TACACGCATCTGTTTGCTG 59 NA Rattus norvegicus 81 Prkcz ENSRNOG00000015480 ENSRNOT00000021285 2 1 1 80 5 172693299 172694562 AGGAGGCATATGGATTCTGTC 60 172693239 172693259 TTCTGAAGGAAGGTCTACACC 59 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 3 1 1 60 11 43687511 43687529 CAAGAAGCTCTCCCTTCAG 58 43687552 43687571 CAAGGAATGCAGGTTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar3 ENSRNOG00000015260 ENSRNOT00000020656 1 1 1 80 2 252115080 252157452 CTGTCTTAGGAGCCTTCGT 59 252157496 252157514 TACACTGCTTGCAGTTCAG 58 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000026182 1 1 2 167 1 85489179 85489197 GTTGCACTTCTCATACCGC 59 85489327 85489478 CGACATACGGTTAGGGACTC 60 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000084062,ENSRNOT00000009666 1 2 2 80 6 76200475 76200493 CAGAGTCAACCAGCTTCCT 59 76200536 76202311 TGATTGCAGTTTCCACTGTC 59 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 1 1 1 61 10 70303562 70303580 GTGTTATGAAGCCGCTGAC 59 70303605 70304886 CTCTGGGTTGGTTTCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Pde6b ENSRNOG00000000065 ENSRNOT00000000077 3 1 1 80 14 2333124 2333344 ACCAGATGAAATCTCAGAATCC 58 2333065 2333083 ACTTCCCAAACTCCAAGTG 58 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 3 2 2 80 4 165622665 165625304 TGTTTGTACACCAGACTGC 58 165622603 165622623 ACTCTACAGTTTCTCCATCCC 59 NA Rattus norvegicus 81 Chrna10 ENSRNOG00000020293 ENSRNOT00000027507 3 1 1 80 1 167209741 167210109 GATCATTGATATGGATGAACGG 57 167209682 167209700 TGTAGGTAGGCATCTGTCC 58 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469,ENSRNOT00000084521 3 2 2 80 2 120281288 120281310 CCTCTCATTTCAACTTCGTAAGG 60 120281105 120281248 CTGAGTCTTCCACACTGCT 59 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000078548,ENSRNOT00000008312 3 2 2 84 6 56011015 56011486 GTGTGAATGTTGTGTCCTCTG 60 56011531 56011550 GGATACAGAAGAGGAAGGCT 59 NA Rattus norvegicus 81 Kynu ENSRNOG00000029993 ENSRNOT00000043533 1 1 1 80 3 28558072 28564918 TGCCAGTTTAGAGATCTTTCAG 58 28564957 28564977 TATTCCAGATAACCTGTCAGC 57 NA Rattus norvegicus 81 LOC100911456 ENSRNOG00000047911 ENSRNOT00000075212 2 1 1 80 5 164553558 164553835 CAGCATCAGAGTCAAACCTG 59 164553497 164553516 AGGAAGCAGAAGTCTCTTGG 60 NA Rattus norvegicus 81 Lum ENSRNOG00000004610 ENSRNOT00000006109 2 1 1 87 7 38820074 38822444 AGAGTAAGGGCACAGAGGA 60 38822494 38822513 TATTGGCCACTGACACTACC 60 NA InUTR Rattus norvegicus 81 AABR07065877.1 ENSRNOG00000053487 ENSRNOT00000071876 3 1 1 60 6 143536845 143536864 GAGGTACAGGCTACAATGAG 58 143536804 143536823 GAGGATTTGCCTTCAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cecr6 ENSRNOG00000046851 ENSRNOT00000074558 3 1 1 63 4 153027165 153027185 CATCTACTCCATCGCTTTCAC 59 153027122 153027140 GAGGTCCAGGATGGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 1 2 2 80 11 87699133 87699153 TTCGTGTACTTAATTGGAGGG 58 87699195 87706346 GTGTCTTGGGTCATACCTC 57 NA Rattus norvegicus 81 AABR07062206.1 ENSRNOG00000051489 ENSRNOT00000071421 1 1 1 80 4 165024550 165024568 CTTCAGGCTTACAGAACCA 57 165022987 165024507 AGAGGACTGAACACTTTCTG 57 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000089454 1 1 2 60 6 139636923 139636941 ATGGACAGTCTGAGGTCTG 58 139636617 139636900 ACAATGATGTGTCTGTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Kif3c ENSRNOG00000011394 ENSRNOT00000015820 2 1 1 80 6 27794581 27813450 CCAGCTGGAGTGAATAACAG 58 27813493 27813511 AGCATACTGGCTGATAGGT 58 NA Rattus norvegicus 81 Tns2 ENSRNOG00000010588 ENSRNOT00000074212 3 1 1 80 7 143720199 143720219 GCATCACTTTCTCTAGCACTG 59 143720359 143720470 CGAAACCAAAGATCTTGGAGG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746,ENSRNOT00000079201 2 2 2 80 12 39374346 39375609 GACCCACAAAGTAAAGGAATCC 59 39374287 39374306 CCAGGCAAAGATTTCACAGG 60 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 3 2 2 82 8 82272010 82272935 CACTACTAACAAGGAGCACG 58 82272980 82272998 CAATGGCACATCCTGATGG 59 NA Rattus norvegicus 81 Elfn2 ENSRNOG00000007934 ENSRNOT00000010609 2 1 1 60 7 119894502 119894520 CTCTAAGCGAGACTCCACC 59 119894460 119894484 GGAATACCCTGAGTAATAATGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd2 ENSRNOG00000001490 ENSRNOT00000002040 3 1 1 80 1 57514239 57514258 ATGAATCCAAGGAGGATCAC 57 57513378 57514197 TTCCATACCTGAGAATCTGC 57 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000067034 2 1 2 87 2 124403437 124403455 CGATTCTGTCCCTAGACCA 58 124403506 124404688 AACTGTGTTGGTCTTCTCG 58 NA Rattus norvegicus 81 Zbtb3 ENSRNOG00000019461 ENSRNOT00000026321 2 1 1 86 1 224998304 224998613 GTTGGAGGACTCACTGGAG 59 224998663 224998681 ACTGTGTTCTGGGAACTCC 59 NA InUTR Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 2 2 2 80 5 63110340 63110358 ACGTGCTGACATCTATGCA 60 63110402 63111627 TAGTCTTCGTGGATTCCGC 60 NA Rattus norvegicus 81 Fdx1l ENSRNOG00000023020 ENSRNOT00000028127 3 1 1 68 8 22087018 22087036 TACCACCTCCTGAGGAGAG 59 22086870 22086888 GTCTCGAGTTCTCCTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rpl8 ENSRNOG00000048456 ENSRNOT00000075451 2 1 1 80 7 118508934 118509101 GGTGTTGCCATGAATCCTG 59 118509145 118509163 TCTTCGGATAGTGGAAGGC 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742,ENSRNOT00000033017 1 2 2 80 17 1730158 1730179 TTCAACTGGATAATACCAGAGC 58 1729624 1730117 TTGGTGGTAACCACTTTCC 58 NA Rattus norvegicus 81 Il17re ENSRNOG00000009204 ENSRNOT00000056508 2 1 1 80 4 145424834 145424932 CTTGTGTCCTGATGTCTCC 58 145424976 145424994 ACTACACCCAGTAGAGTGG 58 NA Rattus norvegicus 81 Wdr3 ENSRNOG00000019670 ENSRNOT00000026726 2 1 1 80 2 202459553 202459573 CCATGCCTTGTGAATATGCTC 60 202457791 202459513 TATTTCCTGTCTTTGTCCCGA 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000086298,ENSRNOT00000060327 2 3 7 60 20 4096841 4096859 TGCTTGGCCTACATTCCTC 60 4096883 4096901 GAGAATCAGGAGGAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134202423 134202441 ACCTTCTGTGAGTCGAGAG 59 134200373 134202382 ATTGTGACTCTGATACCTTTGG 58 NA Rattus norvegicus 81 AABR07004112.1 ENSRNOG00000016498 ENSRNOT00000022127 1 1 1 80 1 125878138 125878157 CTTCCATGGACTCTTACCGA 59 125878194 125878219 CTCCACTCCTTATTAGAATGAACTG 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070,ENSRNOT00000037097 1 2 2 84 5 152621220 152626006 TGATGACCTTGAAGGGCAG 60 152626053 152626072 AAAGCAAGAATAGCCGTAGC 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070,ENSRNOT00000037097 3 2 2 87 5 152621220 152626006 TGATGACCTTGAAGGGCAG 60 152626056 152626075 GTCAAAGCAAGAATAGCCGT 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000088379 1 1 2 80 4 122131494 122131513 TCCATCCTGATGCTCATGAG 59 122131552 122178610 CAGATACATAGTTCTTGAGCTGC 59 NA Rattus norvegicus 81 Nr5a2 ENSRNOG00000000653 ENSRNOT00000000812 1 1 1 80 13 53799948 53850874 GGGAACTGAAGGTTGATGAC 59 53799887 53799905 GCCGGTAAATGTGATCCAG 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653,ENSRNOT00000028329 1 2 2 80 1 217782979 217786725 AGAAACAAAGAGACTGACAAGG 59 217782920 217782941 GATGATGGAGACAAGATTGGTG 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653,ENSRNOT00000028329 3 2 2 80 1 217782977 217786723 AAACAAAGAGACTGACAAGGTG 59 217782918 217782939 AAGATGATGGAGACAAGATTGG 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 2 2 18 81 1 43637403 43697828 TACAGGGACAGACCTAGACC 60 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA Rattus norvegicus 81 Thap11 ENSRNOG00000019109 ENSRNOT00000025815 3 1 1 60 19 37826455 37826473 CTCAGCTGGTGGTAGTAGG 59 37826497 37826515 GAGTATGAGTGGTCGGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000071463,ENSRNOT00000075728 3 3 3 86 2 235678555 235680983 TTGATGGAGAACAGGGACTC 59 235681032 235681050 CAGGAAGTCCGATTCCTCC 60 NA Rattus norvegicus 81 Mettl4 ENSRNOG00000026280 ENSRNOT00000037587 3 1 1 80 9 119891073 119891092 CAGATCAGAGGTTGATCGTC 58 119891133 119895353 TGTAGTCTTTCAGAACTTCGG 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 3 2 2 80 6 108657267 108657285 TTACTGTGAAGCTCGGTGG 60 108652566 108657225 TGGAAGGAACTACCATTCCAG 60 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 2 1 1 95 X 15425396 15425820 GCTGAGGTACTTGCTAGGG 60 15425319 15425337 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Olr813 ENSRNOG00000005412 ENSRNOT00000007168 2 1 1 60 4 72503613 72503631 ATCAAGTCACAGCAAGGTC 58 72503654 72503673 CGACACAGAGATGAGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 1190003K10Rik ENSRNOG00000050209 ENSRNOT00000072220 3 1 1 82 17 1999507 1999525 AAAGGAGATCCGCAAACAG 58 1994255 1999463 CTTCTCTGAGCTTTCTCAGAG 58 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 2 3 3 80 1 233135110 233138183 TGGACGTTTCCAAGTTTGG 59 233135048 233135066 GGACAATCACTACCGTCAC 58 NA Rattus norvegicus 81 Plac9 ENSRNOG00000011263 ENSRNOT00000014964 1 1 1 80 16 3862585 3862603 GATCTAGCTTGGAGCCCAG 60 3862647 3865019 CTTCTCCACCGTCTCTTCC 60 NA Rattus norvegicus 81 Cep170b ENSRNOG00000033688 ENSRNOT00000030246 2 1 1 80 6 137308146 137308428 GAAGATGAAGATCCTCTTCCAG 58 137308469 137308487 GGTACTTCATTCTCAGCGT 57 NA Rattus norvegicus 81 Rgs21 ENSRNOG00000056369 ENSRNOT00000086610 2 1 1 93 13 61303253 61306761 AGCTAACCAAGCTGGACTG 60 61303178 61303196 GAAGTCTTCACAGGCAAGC 59 NA Rattus norvegicus 81 Thumpd3 ENSRNOG00000006941 ENSRNOT00000009464 2 1 1 80 4 144987173 144987191 GTCATCCTGCAGAATCAGC 59 144987235 144988819 AGACAATGAACCTGAGCCA 59 NA Rattus norvegicus 81 Shc2 ENSRNOG00000008030 ENSRNOT00000010714 1 1 1 86 7 12964718 12964736 CTTTGGAGCTTGAGGACAC 59 12964786 12966460 CTTCAAAGGGTCGCATGTC 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695,ENSRNOT00000084765 1 2 2 80 11 7265931 7265949 CCGATGGTGGCATATACTG 58 7265991 7300232 GATTCCAACCACTGAATTCTC 57 NA Rattus norvegicus 81 Phf20l1 ENSRNOG00000046527 ENSRNOT00000007564 3 1 1 80 7 108744800 108749037 GAAGTGAGGACTGGATTGC 58 108749081 108749099 TGGTTCGAGGTTTAGACCC 59 NA Rattus norvegicus 81 Ctsr ENSRNOG00000017888 ENSRNOT00000024115 2 1 1 80 17 3886909 3886929 ATTTGATCCCAGTTTGGATGC 59 3886969 3887258 TGTCCTTCTTCCTCCATAGTG 59 NA Rattus norvegicus 81 Anapc1 ENSRNOG00000016965 ENSRNOT00000055875 1 1 1 80 3 121177720 121177864 CAAGTTACCAGATCAAAGAAGGAG 60 121177663 121177681 AGATCATAGCCAGAGCCAG 59 NA Rattus norvegicus 81 Nphp3 ENSRNOG00000048978 ENSRNOT00000014636 3 1 1 80 8 112553881 112555542 AGAATGGATGACACAGATTCTC 58 112555582 112555601 GGATACAGTTCCATCAGCTC 58 NA Rattus norvegicus 81 AABR07060165.1 ENSRNOG00000048544 ENSRNOT00000065546 1 1 1 84 4 60547684 60547789 ACATCCCACAAAGCAAAGG 59 60547618 60547637 GCAGTGTTGTTCCACATCTC 60 NA Rattus norvegicus 81 LOC691113 ENSRNOG00000011713 ENSRNOT00000015807 2 1 1 112 4 100211483 100211814 TATATCAGGACGATGATCCCG 59 100211888 100211906 CTTTGCAAGTTCCTCCTGG 59 NA Rattus norvegicus 81 Olr1406 ENSRNOG00000029930 ENSRNOT00000048759 2 1 1 60 10 36485614 36485632 CCCAATCAGACAGCTACAG 58 36485656 36485674 AGACAACCTCTTCCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1536 ENSRNOG00000053715 ENSRNOT00000081508 3 1 1 60 11 45687776 45687798 CTTCTCTTCATGTATCTGCTTCC 59 45687738 45687758 AGTCCATCATGTCTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf225 ENSRNOG00000038445 ENSRNOT00000058574 3 1 1 84 1 65659508 65659911 AGGTCTACAGGTCCATTCTG 59 65659443 65659461 AACCAGGACTAGAACCCTG 58 NA InUTR Rattus norvegicus 81 Rilpl2 ENSRNOG00000001061 ENSRNOT00000001403 1 1 1 81 12 37551794 37552567 CAGTGCTACAGGAGTGGTC 60 37552612 37552630 TGCCCATGGTAACCATAGC 60 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910,ENSRNOT00000091227 3 2 2 85 7 30078751 30095286 CTGCAAAGGTTTCTTCCGA 58 30078684 30078703 TGTACATATCCATCACGCAG 58 NA Rattus norvegicus 81 Mtcl1 ENSRNOG00000025527 ENSRNOT00000050012 3 1 1 80 9 114606361 114606379 GCAGCACATGATCGAAGTG 60 114550939 114606318 CTCTTCAGAGAACTCTCCCG 59 NA Rattus norvegicus 81 Pik3r5 ENSRNOG00000023428 ENSRNOT00000032785 2 1 1 80 10 55074096 55074114 GGAAACTCCACACGATTCC 59 55074157 55074508 CCTGTAGGATGTCAAAGCTG 58 NA Rattus norvegicus 81 Rn60_1_0436.2 ENSRNOG00000060991 ENSRNOT00000078186 2 1 1 60 1 43533234 43533252 CCGAACTGAACCTATGGAG 57 43533192 43533210 AAGTCACAAACTCAGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000083046,ENSRNOT00000085609 2 2 2 80 8 117140435 117140454 AACACCTATGAGCAGTTGAG 58 117140495 117140645 CTCAATTACTAGCACCTGACC 58 NA Rattus norvegicus 81 Rax ENSRNOG00000016944 ENSRNOT00000022784 3 1 1 76 18 61641265 61641283 TTAACCTACCCGAGGTTCG 59 61638784 61638802 TTCTAGTTTCTCCTGGCGT 58 NA DesignNoJunction Rattus norvegicus 81 Cpa1 ENSRNOG00000010725 ENSRNOT00000014465 1 1 1 80 4 57955378 57955568 GCAAAGAAGATCACCAAAGAC 58 57955609 57955628 AATCTCCAGGAAGATGTCCA 58 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000080940,ENSRNOT00000045763 2 2 2 80 9 17930133 17930154 GTTCCCAGAACAGAGTAAAGAG 59 17930193 17931420 TTCTCATAAGGTCCCAGTGAG 59 NA Rattus norvegicus 81 Tspan2 ENSRNOG00000023338 ENSRNOT00000035605 3 1 1 81 2 205184904 205184923 CTGTCTGCTGGTGATATTCG 59 205184964 205186039 TACGTGTCGTATAGCTACATCC 59 NA Rattus norvegicus 81 LOC100910472 ENSRNOG00000004484 ENSRNOT00000005925 3 1 1 94 7 118502749 118503109 ATGCAACTGTGGTTAGGAC 58 118503167 118503185 GATGGTGCAAGTATGGAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Myrfl ENSRNOG00000021833 ENSRNOT00000068774 1 1 1 80 7 59800056 59800077 TATATGTTTCCACAGTCAACGG 59 59799673 59800016 CAAATGTGCTGGTATCCCTG 59 NA Rattus norvegicus 81 Slc7a4 ENSRNOG00000001874 ENSRNOT00000002560 2 1 1 80 11 87447296 87447314 GTGCTGTCTTTCTGTCCAG 59 87446954 87447253 CCAAAGGGATCTGGAAAGTG 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 2 1 1 80 1 76345676 76345697 ATAACATTGTTGCCAACTCCTG 60 76338597 76345641 CTTGGTATCCTTACCATTCATTCTC 60 NA Rattus norvegicus 81 Baiap3 ENSRNOG00000017893 ENSRNOT00000024072 1 1 1 80 10 14607055 14607073 CGATGATGACGTTTCCCTG 59 14606867 14607014 TTGAAGTATCTGGTCATTCCCT 59 NA Rattus norvegicus 81 Sertad3 ENSRNOG00000037690 ENSRNOT00000057190 3 1 1 60 1 84280978 84280996 TTTGTCGAAGGTAGTCGTG 58 84283424 84283443 TTTCCTCTTTAAGCCTCCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nasp ENSRNOG00000016454 ENSRNOT00000022170 3 1 1 80 5 135449383 135449406 GTTACAACTCTCAGTATGATGAGG 59 135449222 135449347 GTAGTACAGCCATTCTCTTCTC 58 NA Rattus norvegicus 81 Slc28a3 ENSRNOG00000018853 ENSRNOT00000025745 1 1 1 80 17 6501614 6501634 TTGCTTTCCTTTGTGAACTCC 59 6501674 6502455 ACAAATGAGCTCGAAACTCAG 59 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 3 1 2 86 1 85499565 85499701 GCCTTCGGTACATTCTACTG 58 85499847 85499866 TAACCTGGGTAGCTCTTTCC 59 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 2 1 1 80 11 61512198 61513916 AACATCTATCTGCATGTCCAG 58 61512138 61512158 AGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Rn60_1_0913.2 ENSRNOG00000051284 ENSRNOT00000076885 3 1 1 60 1 90131201 90131221 TAAGAACGGCAAGAAGATCAC 59 90131161 90131181 CTCAATGAAGTTCAAGCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065740.1 ENSRNOG00000061324 ENSRNOT00000073207 1 1 1 60 6 139997266 139997287 TGTACTACTGTACCAGAGACAC 59 139997227 139997248 GGAGAATTCTTTCCAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup210 ENSRNOG00000005390 ENSRNOT00000008888 1 1 1 80 4 122692805 122692823 TCTCATGCCTGTCTATGCC 59 122687334 122692761 GATACTGGAACCACCTGCT 59 NA Rattus norvegicus 81 Pds5a ENSRNOG00000002541 ENSRNOT00000003437 3 1 1 80 14 44259893 44259911 CTCAGGAACCTTGCTACCA 59 44259951 44260223 GGTAGCACTCATCGTTAATAACC 59 NA Rattus norvegicus 81 Ferd3l ENSRNOG00000011091 ENSRNOT00000014731 1 1 1 60 6 53372157 53372176 TTATGAGAAGAGGCTGTCCA 58 53372197 53372217 GAAAGAAATGTAGACGATGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1361.3 ENSRNOG00000012384 ENSRNOT00000016597 3 1 1 60 1 135042312 135042330 GCCTTAAAGGTAAAGGCCA 58 135042270 135042291 CTTCATCTCCATGTGTATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 3 1 1 80 7 119173028 119175516 TTTATGCAGAGTCCTGTTTCCT 60 119172969 119172989 GCATTCTTAGGTATCCCTGCT 60 NA Rattus norvegicus 81 Olr1546 ENSRNOG00000057507 ENSRNOT00000080384 1 1 1 60 11 43455059 43455080 TCATCATGACAAATAGGCTCTG 58 43455100 43455119 ATAAACCCACCTACCAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910787 ENSRNOG00000051167 ENSRNOT00000076562 2 1 1 60 8 41285808 41285828 TGGCTTATGATCGTTATGTGG 58 41285850 41285868 GGAGACATAAGAATGGCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC110981.1 ENSRNOG00000026991 ENSRNOT00000037432 1 1 1 60 11 70688189 70688207 CTTCAACAGCAACTCCCAC 59 70688231 70688249 GTTATTGAGAGCAACGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhoh ENSRNOG00000002540 ENSRNOT00000003425 2 1 1 81 14 43992389 43992408 AGCTACTTAGACTTCCGGAG 58 43963416 43992346 CTCAGTCACTTTGGGAACTG 59 NA InUTR Rattus norvegicus 81 Dlat ENSRNOG00000009994 ENSRNOT00000032152 1 1 1 80 8 55087618 55087636 CGCATACTGCAACAACTCC 60 55087141 55087576 TGAAGGTAGTGGAACCTTCTG 60 NA Rattus norvegicus 81 Dlat ENSRNOG00000009994 ENSRNOT00000032152 3 1 1 82 8 55086667 55087065 CTAATTGCAGAGGTTGAAACTG 58 55086606 55086624 GGAACAAGGATCTTTGCCA 58 NA Rattus norvegicus 81 Insm2 ENSRNOG00000007754 ENSRNOT00000010188 1 1 1 60 6 76384394 76384412 CTACAGGCTCTAGTGCACC 60 76384436 76384454 GAATCACCTCGGAGTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.2 ENSRNOG00000048493 ENSRNOT00000072691 2 1 1 60 2 52152985 52153003 ACACATGGAAACAACCCTG 58 52153024 52153045 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps2 ENSRNOG00000014179 ENSRNOT00000019508 2 1 1 80 10 14089635 14089654 TCCAAGACCTACAGCTACCT 60 14089693 14089910 GTCAGTGAATTCCTGATAAGGAG 59 NA Rattus norvegicus 81 Olr1541 ENSRNOG00000029104 ENSRNOT00000043299 1 1 1 60 11 43340635 43340654 GTCTGATCACTCTCATCTGG 57 43340674 43340695 GCAAGGAATAAGTACATAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000040513,ENSRNOT00000073905 2 2 2 199 7 120140940 120140958 TTTCCTTCGCCAAGTTGAC 59 120144582 120144600 CTGGAACATGTAAGGGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1349 ENSRNOG00000016546 ENSRNOT00000022152 1 1 1 60 9 99745810 99745828 CTGCTCTTTGCTGTCTTCC 59 99745852 99745870 TCATAGTGAGGTTGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evc2 ENSRNOG00000007025 ENSRNOT00000009914 3 1 1 80 14 78186790 78186808 TCCCTCAATGACCAACTGG 59 78179934 78186748 GATCTCCAACTCTTCTAGGGC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643,ENSRNOT00000078799 2 2 2 80 4 11308644 11308665 GAGTTTCTACAGGTGAAGAGTG 59 11227278 11308605 GACAATGACATCACCTGTCTC 59 NA Rattus norvegicus 81 Jagn1 ENSRNOG00000009175 ENSRNOT00000012177 1 1 1 80 4 145400097 145403644 ATGCACTACCAAATGAGTGTG 59 145403686 145403704 CAACAGCAGCCATATGACG 59 NA Rattus norvegicus 81 Tbc1d25 ENSRNOG00000005303 ENSRNOT00000007130 1 1 1 92 X 15064901 15066483 CGAGTCAAGAAATGTGAGAGC 59 15066537 15066555 GATATGCTGCAACACGTCC 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575,ENSRNOT00000027590 2 2 2 80 1 167286530 167286548 TAGCACTAACATCAGCACC 57 167285861 167286488 AAACGAAGCTCCTCTAATGAC 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985,ENSRNOT00000086244 2 2 2 80 12 37727870 37728817 TGTGATGTTGTCTAAGATCAGG 58 37728854 37728876 GACTCATAATAAGCTCGAAGGTC 59 NA Rattus norvegicus 81 Tbx4 ENSRNOG00000003544 ENSRNOT00000004736 3 1 1 80 10 73345535 73345558 ACCAAGTACATACTACTCATCGAC 60 73345595 73346677 AGCAACCATCCATTTGTTGTC 60 NA Rattus norvegicus 81 Serpinb9d ENSRNOG00000022139 ENSRNOT00000032707 3 1 1 81 17 32516781 32517904 GTCCAGATATCTCAGGCAC 57 32517949 32517967 GGTTGTGAAGAAGCAACTG 57 NA Rattus norvegicus 81 AABR07065750.1 ENSRNOG00000045984 ENSRNOT00000072365 1 1 1 105 6 140215935 140216037 ATTTCCAAGCTGTGTCCTG 58 140215848 140215866 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Vom2r1 ENSRNOG00000048575 ENSRNOT00000075323 1 1 1 80 10 111552462 111561235 GGAGAAACATTGGTTCCCT 57 111552400 111552419 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Tmem161b ENSRNOG00000032414 ENSRNOT00000050072 1 1 1 80 2 12541209 12541227 TGGGTGAAACCAATCACCA 60 12541269 12546959 TGTGGCTTCTGTCATTAAAGG 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000078114 2 1 3 80 4 164352078 164352097 GGCATGAATGTAAACAGACC 57 164345868 164352037 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 AC106292.2 ENSRNOG00000059017 ENSRNOT00000085226 3 1 1 60 11 65744159 65744179 ATTCCTGCAAATAGACAGCCT 60 65744201 65744219 CAGACGCTGAGATACTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfe3 ENSRNOG00000009605 ENSRNOT00000012829 2 1 1 80 X 15583039 15583585 GTACTCAAGGTTCAAACCCAC 59 15582979 15582998 GTACTGTTTCACCTGTTGCC 60 NA Rattus norvegicus 81 LOC100361105 ENSRNOG00000030812 ENSRNOT00000042900 3 1 1 86 6 141147080 141147185 CCTTCCTGGTATCCTGTCTG 59 141147013 141147031 GAACAGGTGAGGGAGAGTG 59 NA Rattus norvegicus 81 Setd8 ENSRNOG00000001062 ENSRNOT00000066253 1 1 1 81 12 37569821 37569839 ATTCTACCAGTGTAGCGGT 58 37569394 37569776 CCTTGAGACTTCTTCCGAG 57 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 1 2 2 80 5 153261796 153262441 CTGAGTGAGAAAGATCGAATGG 59 153262482 153262500 GTCAAAGTTGGCTGTTCCT 58 NA Rattus norvegicus 81 Adam6 ENSRNOG00000037524 ENSRNOT00000056829 1 1 1 60 6 138434459 138434479 TTGCTCCCAAACTAACTTCTG 59 138434499 138434519 ATCCAACCGAGATAAACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt27 ENSRNOG00000011628 ENSRNOT00000015740 1 1 1 81 10 87259361 87259379 CAGGAACGAACTCACTGAG 58 87257740 87259318 AGAGTGTTTCATGGCTAAGAG 58 NA Rattus norvegicus 81 Fam174b ENSRNOG00000012369 ENSRNOT00000016481 1 1 1 80 1 135084404 135126215 AGTCTTCAGGTTGGGAAAGAG 60 135126257 135126275 GCCATTTCCACACGTTCAG 60 NA Rattus norvegicus 81 Fam174b ENSRNOG00000012369 ENSRNOT00000016481 3 1 1 90 1 135126256 135126274 GCTGAACGTGTGGAAATGG 60 135126322 135162482 GTTCATGTTCTCTGTATCTGATGTC 60 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 1 3 3 80 11 20495218 20495239 GAGAAGAGATGACCTTAACCTG 58 20495279 20501682 CAATGAGTTTGCCATTCCTG 58 NA Rattus norvegicus 81 Opn1mw ENSRNOG00000051529 ENSRNOT00000083147 1 1 1 80 X 156581370 156581388 GTGGGAATCGTCTTCTCCT 59 156580112 156581326 ATAAGGCCAGTACCTGCTC 59 NA Rattus norvegicus 81 Tspan5 ENSRNOG00000015913 ENSRNOT00000021381 3 1 1 85 2 244213857 244216063 CAGGAATACTGGCAGTGCT 60 244216112 244216130 CTTGCATTGGAGTCTGTGC 60 NA Rattus norvegicus 81 LOC100911130 ENSRNOG00000048613 ENSRNOT00000066373 2 1 1 101 X 15446957 15446975 ATTGTGGATGATTGTGGCG 59 15444357 15446892 GTGTCGAATTCCAACAGGG 59 NA Rattus norvegicus 81 Olr1455 ENSRNOG00000045676 ENSRNOT00000070882 1 1 1 60 11 55498062 55498081 TTCTACACCATCTTCACACC 57 55498103 55498122 CCTCCTTGTTTCTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 2 2 2 84 9 19538017 19540703 TCTACTTTGCACAGGTCCA 59 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Ctc1 ENSRNOG00000005357 ENSRNOT00000007447 1 1 1 80 10 55608479 55608499 GGTGTGGAAATGTCAGTTAGG 59 55608541 55608688 GGACAGAGCTTGTAGACCA 59 NA Rattus norvegicus 81 Dpagt1 ENSRNOG00000009799 ENSRNOT00000013134 1 1 1 80 8 48662951 48662970 AATTTCCTCTACTCACTGCC 57 48663012 48663536 TGTCTTCGTATTGAGTCTGG 57 NA Rattus norvegicus 81 Rassf9 ENSRNOG00000038574 ENSRNOT00000058842 1 1 1 84 7 44146727 44176796 CGGCATAAGAACAGATCTCC 58 44176843 44176861 CAATCTTCTCCTCCTGGCA 59 NA Rattus norvegicus 81 Dusp22 ENSRNOG00000056376 ENSRNOT00000090946 3 1 1 80 17 35025621 35025640 ACAATTGAGCAGGAACAAGG 59 35002991 35025580 AGGTATTTAACTCCCTCCAGC 59 NA Rattus norvegicus 81 Sh3gl1 ENSRNOG00000049683 ENSRNOT00000074695 1 1 1 80 9 11053090 11053109 AGGCCCTAGAGAAGTTTGAG 59 11053150 11053306 CCTGCTCAATATCAGTCTCCA 59 NA Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 3 1 1 80 13 67667179 67667197 CTGAAGACATGCCACAGAC 59 67667238 67668444 TTTCATACATTCCCAAACCTCC 59 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923,ENSRNOT00000049857 3 2 2 94 3 122699740 122699758 GAGAAGAGAAGCGAGTCCT 59 122698205 122699683 AATGCCAGTATCTTTGGGAG 58 NA Rattus norvegicus 81 Sept2 ENSRNOG00000017952 ENSRNOT00000024261 2 1 1 80 9 100648272 100649046 GACTAGACTCCTCAAAGCCA 59 100649089 100649107 CTAACCTTCTTGCCCTTGG 58 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071,ENSRNOT00000042735 3 2 2 80 6 998903 998922 ATGCCTGTAGACTGGAAGTC 59 990823 998863 ATCACTCATCCCTTTCTCTGAG 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 1 1 1 80 13 68797863 68797881 CAGGATGTGCATCTGTCAC 59 68797921 68800488 GCTCCCAATTTACTGGATATCTG 59 NA Rattus norvegicus 81 Lppr3 ENSRNOG00000027940 ENSRNOT00000031315 2 1 1 90 7 12661716 12661735 TACTCATGCCATCCTGTCAG 59 12661918 12662022 GAAGTACATCGAAACGTAGACAG 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611 2 1 3 83 1 65906616 66133495 CCAGATCAGTTATTCATCTTCCC 59 66133538 66133556 AGATCACTAGGCAGTGTCC 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105,ENSRNOT00000082037 3 2 2 80 5 153685131 153688001 GTCTTCATCTGACTCTGGC 58 153685069 153685088 CCTACCTCACCATTCTTCAC 58 NA Rattus norvegicus 81 Adamts1 ENSRNOG00000001607 ENSRNOT00000002187 1 1 1 80 11 25346044 25346285 ATGAAGCACTTTGCTACTCC 58 25345983 25346001 TCCACCACAGGTTCTTGAG 59 NA Rattus norvegicus 81 Eef1g ENSRNOG00000020075 ENSRNOT00000027305 3 1 1 80 1 225173291 225173404 CTCATCACTGGGATGTTTCAG 59 225173445 225173464 GTTGTTGGTTCCAAACAGGA 59 NA Rattus norvegicus 81 LOC100911625 ENSRNOG00000048365 ENSRNOT00000005535 3 1 1 81 9 20257117 20257617 CCGGAACTATCCTGTGGTC 60 20257661 20257680 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 Rn60_8_0402.2 ENSRNOG00000051359 ENSRNOT00000077043 3 1 1 60 8 40198945 40198965 CTAAAGTCTTCCCAGTGTCCT 59 40198905 40198923 CTCCATAGAAACCCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076780,ENSRNOT00000015084 3 2 3 80 1 136673094 136675744 TACCTTCTACAACACAGACCTC 59 136673035 136673053 TCCTTCTGCTCCAGAAAGG 59 NA Rattus norvegicus 81 Kcnh4 ENSRNOG00000018790 ENSRNOT00000025518 2 1 1 82 10 88649553 88651622 GCTGAACCAAGAGATTTCCAG 59 88649491 88649509 CCTGTAAGAGGCCCATCAC 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 3 3 5 80 4 164530393 164530413 GGCATGAATGTAAACAGACCT 59 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 2 1 1 83 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432447 121432465 AGTGCAGGAAGGAGATGAG 59 NA InUTR Rattus norvegicus 81 Rn60_16_0001.1 ENSRNOG00000046720 ENSRNOT00000075622 2 1 1 100 16 141126 141146 GGTGTCTGGTATATGAGTCAG 57 141015 141066 TTTGGTAAGATCTTCTCCCAC 57 NA Rattus norvegicus 81 Hspb9 ENSRNOG00000036819 ENSRNOT00000055248 2 1 1 60 10 88620880 88620898 CTGCTCAAGGATGATCTGG 58 88620922 88620940 TCTGGAAACTTGGTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnppd1 ENSRNOG00000018325 ENSRNOT00000024975 1 1 1 80 9 82343917 82343937 GGAGACTCTATTATGGCTGGG 60 82343058 82343875 CCACAGTAATGTCTGCCAC 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 3 2 2 80 8 56499840 56499858 CAAGTGACCAGTTAGCTGC 59 56499900 56501882 CAAATGGACCCAGATTCAGTG 59 NA Rattus norvegicus 81 Tmem254 ENSRNOG00000011276 ENSRNOT00000015011 3 1 1 82 16 3817686 3819587 TTCAGCTACTACACGTGGG 59 3819632 3819651 TACTTTGTGAAGGGACCCAG 59 NA Rattus norvegicus 81 LOC100364523 ENSRNOG00000056519 ENSRNOT00000084780 2 1 1 80 17 4048865 4048885 ATAACAGGGAGAATTCCTTGG 58 4048716 4048826 TGAATTCTTCATCAGTCAGGTC 58 NA Rattus norvegicus 81 Rn60_20_0064.7 ENSRNOG00000052710 ENSRNOT00000089737 1 1 1 60 20 4245528 4245546 ATGAGTGTGGAGAACATGG 57 4245486 4245506 ATACTGCTTGTGAGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362583 ENSRNOG00000030442 ENSRNOT00000045933 1 1 1 80 17 24610657 24610679 CTCATGAGGTATGGACGTACC 60 24610597 24610615 TCCGGTAGTGGATCTTTGC 60 NA Rattus norvegicus 81 Sqle ENSRNOG00000009550 ENSRNOT00000012883 2 1 1 80 7 99623134 99624350 GGTTGCTTTCTATATTGTCTCC 57 99624389 99624409 AGAAATACGTGGCATAGACTG 58 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 3 2 2 80 11 15472603 15472622 AGTTTGGCGGAATCAAACAG 60 15472665 15474676 GGCTTCAAGAACTCTGCTG 59 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649,ENSRNOT00000080090 3 2 2 118 6 147930250 147933708 AGTCAGGACTTGTCATGATCC 60 147933788 147933806 CAGTGGGTACAGGGATGAG 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 1 3 7 80 19 15172597 15172617 CCAACTTCTGGAATTGATTGG 58 15172659 15188703 GCTCCAGCATCTCTATGTC 58 NA Rattus norvegicus 81 Skiv2l ENSRNOG00000000421 ENSRNOT00000000481 3 1 1 80 20 4526457 4526825 GAAACACATGACCCGTACC 59 4526395 4526413 AATGTGTTTCGGAAGTCCC 58 NA Rattus norvegicus 81 Ogdhl ENSRNOG00000019955 ENSRNOT00000027054 3 1 1 80 16 8513269 8513429 AGGGTAGGAAGGTCATGTC 58 8513472 8513491 GATGGAAGGTCTCATAGACG 57 NA Rattus norvegicus 81 Slc25a21 ENSRNOG00000008931 ENSRNOT00000034342 3 1 1 81 6 77630183 77650869 CATCCAGTAAGGATCCAACC 58 77630121 77630139 TTAAAGACTGAGCCCACTG 57 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 1 1 1 80 12 42345131 42349220 GATGTCCTAGGTCATGTAAGC 58 42349262 42349280 CAGGTACATGCACTTCCTG 58 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488,ENSRNOT00000009693 2 2 2 80 6 105462780 105463704 GGAGATAGAGGATGAGGATAGTG 59 105462722 105462740 CAGAGGTAGGACTGGTTGG 59 NA Rattus norvegicus 81 Fam20b ENSRNOG00000004337 ENSRNOT00000006018 3 1 1 80 13 74298640 74302394 ATTTGGACAGGATTCTGGGT 59 74298579 74298598 CAGGCTTAACTTCTGTTCGC 60 NA Rattus norvegicus 81 AABR07002044.1 ENSRNOG00000048100 ENSRNOT00000029893 1 1 1 80 1 65294749 65294770 ACTAAGTTTGGTCACAACTGTG 59 65294807 65295168 CCGTAAGTAAGATGACAGAACTG 59 NA Rattus norvegicus 81 AABR07051670.1 ENSRNOG00000047535 ENSRNOT00000070878 2 1 1 116 3 19045255 19045445 TATCACAGTCACAGTGTCCAG 60 19045523 19045541 TAGCTTACACTGGAGCTGG 59 NA Rattus norvegicus 81 Spin2a ENSRNOG00000031286 ENSRNOT00000052281 3 1 1 122 X 17963952 17964614 CAGTGAGCAGGTATGAAGAC 58 17963849 17963867 TTGCCTCTTCTGAGAAGCT 59 NA InUTR Rattus norvegicus 81 Rgsl2h ENSRNOG00000026940 ENSRNOT00000025544 1 1 1 90 13 71282574 71282592 AAGACCAGAACGGAAACCA 59 71282296 71282520 GTTGCATATCAGAGCCCTG 58 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 2 3 3 139 1 168964654 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965432 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 3 3 3 139 1 168964653 168965310 TGAGAACTTCAGGCTCCTG 59 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637,ENSRNOT00000084712,ENSRNOT00000025795 1 3 6 80 1 41917419 41917440 TCATGGTTGAAGAACATCAAGG 59 41916021 41917379 TCTCATCTCATCTGCCACAC 60 NA Rattus norvegicus 81 Scyl3 ENSRNOG00000025318 ENSRNOT00000003551 2 1 1 80 13 82241602 82242548 CCTGAGGAGATGTCTCCAG 59 82242591 82242610 CAAAGCTCCAAAGGCATAGG 59 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754,ENSRNOT00000067104 1 2 2 80 9 17741230 17741345 GCCTACAAGATGTTTACTACAGAG 59 17741384 17741402 CATTCCACTCAATCCTGCC 59 NA Rattus norvegicus 81 Pacrgl ENSRNOG00000004140 ENSRNOT00000005587 2 1 1 80 14 66765759 66767474 GCATTCCTTGCAGATTGGT 59 66765697 66765718 GGTCAAATGGAAGAGTTTCAGG 60 NA Rattus norvegicus 81 Gfpt2 ENSRNOG00000002810 ENSRNOT00000003770 2 1 1 80 10 35309868 35309991 TTGAGACCAACACAGTGCT 60 35310034 35310053 CTATCACAATGAGCCTTCGG 59 NA Rattus norvegicus 81 Olr576 ENSRNOG00000047926 ENSRNOT00000071529 1 1 1 60 3 75719773 75719793 CAGGTCTAATGAGATCAACCA 57 75719733 75719756 GCAAGATATTAACAGAAGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681380 ENSRNOG00000048796 ENSRNOT00000043416 3 1 1 80 1 24924843 24924861 AGAGTGAAGGAATCTGGCC 59 24923747 24924801 TCTCCCAGGGTTAAACATTCC 60 NA Rattus norvegicus 81 Oxsr1 ENSRNOG00000013136 ENSRNOT00000018056 2 1 1 80 8 127991791 127991809 GAGAGTGGCAATCAAACGG 59 127981020 127991752 CTCATAGCTTGGATTTCTTTCAGG 60 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349,ENSRNOT00000056051 3 2 2 80 4 157128799 157128817 CTCCAACGAGGAGAATGGG 60 157128858 157129718 GTACATTCATCAAGGTCCACAG 59 NA Rattus norvegicus 81 Mcm3 ENSRNOG00000012543 ENSRNOT00000017081 1 1 1 80 9 26916772 26916790 GGATGAATCAGACCTGGAG 57 26916267 26916728 TGAGTCTTCCTCCTCTTCC 58 NA Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 2 1 1 80 16 17642154 17642172 AGTGGAAAGTGGAGATGGA 58 17642214 17657997 CCTCTTTCCTCTTGAATTCCT 57 NA Rattus norvegicus 81 Pdzrn4 ENSRNOG00000022844 ENSRNOT00000038686 3 1 1 81 7 133935710 133935730 GAAGACCATGAGTACGTTTCC 59 133935773 133977283 GACACAACTCGACTTCCTC 58 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635,ENSRNOT00000015067 3 2 2 85 2 140316009 140322475 AAAGAAGAAAGTTGGCCGT 58 140315942 140315960 TGGCTTTCTTCTTGACTCC 57 NA Rattus norvegicus 81 Sfrp5 ENSRNOG00000014940 ENSRNOT00000020182 1 1 1 80 1 261445858 261445876 TTTCCTCTGGACAACGACC 60 261444076 261445815 ACAGATCTTGGTCACTGGAG 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 1 2 2 80 8 54973649 54973669 GATGATGGGAGAAGCCTAGAC 60 54969926 54973609 TGCCTTATAGACCTGATCGAG 59 NA Rattus norvegicus 81 AABR07029591.1 ENSRNOG00000057510 ENSRNOT00000086358 3 1 1 80 10 36580188 36580210 CCTTCGATGACTGCTTCAC 59 36580126 36580146 AAGAGATGATCTCCGTTCCAG 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 1 2 2 83 16 81204829 81204847 CAGTGCTGAACGTATTGGG 59 81204894 81205787 GAGACAGAGGGACCATGTC 59 NA Rattus norvegicus 81 Mr1 ENSRNOG00000003522 ENSRNOT00000004694 1 1 1 85 13 72775690 72779719 CCTAGAAAGAACAGAACATCCA 58 72775626 72775644 CATGAGCTCTGCAGAAGAG 58 NA Rattus norvegicus 81 Vom1r50 ENSRNOG00000031734 ENSRNOT00000049387 1 1 1 60 9 52400964 52400985 CTACAGTACATTCACAGTACCC 58 52400925 52400943 TTGTGGCTCTGTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpsap1 ENSRNOG00000010083 ENSRNOT00000013573 1 1 1 80 10 105432530 105436105 GAGCTACCCTTGATGATGG 57 105432468 105432487 CACTATGATTGCAATGCGTC 58 NA Rattus norvegicus 81 Acvr2b ENSRNOG00000014477 ENSRNOT00000019777 1 1 1 80 8 128112982 128113306 CAATTGCTACGACAGGCAG 59 128113349 128113368 CAGAAATTGCCTTCACAGCA 60 NA Rattus norvegicus 81 RGD1564469 ENSRNOG00000031358 ENSRNOT00000040909 2 1 1 60 2 206903681 206903700 CACTCCATCATCAATGGGTC 59 206903721 206903741 AAGTGTAGTCAGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342,ENSRNOT00000025266 1 2 2 100 7 11947792 11950749 TCGCCTAGGAAAGAACCTG 59 11947629 11947647 TGTAGAAGCGGTACTCCAG 59 NA Rattus norvegicus 81 LOC100362054 ENSRNOG00000031178 ENSRNOT00000045266 3 1 1 87 1 67341084 67341102 GAAGTGGAAATCCTGTGGC 59 67341152 67350520 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 RGD1564378 ENSRNOG00000029291 ENSRNOT00000040470 3 1 1 60 2 125257490 125257513 CGACTATGCTATCATCAAATTCCC 60 125257530 125257550 GTCCTCTACTTTCTTCATGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809,ENSRNOT00000028347 2 2 2 80 1 226853529 226853854 AAAGGACAATATGCCCTCC 57 226853467 226853486 ATGGTAGTTGTTGATCCCTG 57 NA Rattus norvegicus 81 Fam25a ENSRNOG00000055025 ENSRNOT00000089114 3 1 1 115 16 10706015 10706033 CTACCTGTCACTGTCTGCT 59 10704139 10705936 TCCTCCACTGCATGAACTG 60 NA InUTR Rattus norvegicus 81 Angptl6 ENSRNOG00000020603 ENSRNOT00000027963 1 1 1 80 8 21895783 21896957 ACTCATATTCTGGCAACTGTG 58 21895723 21895741 CACCATTGAGGTTGGAGTG 59 NA Rattus norvegicus 81 Angptl6 ENSRNOG00000020603 ENSRNOT00000027963 3 1 1 80 8 21895783 21896958 GACTCATATTCTGGCAACTGTG 60 21895724 21895742 ACCATTGAGGTTGGAGTGG 60 NA Rattus norvegicus 81 LOC100125362 ENSRNOG00000025463 ENSRNOT00000028972 1 1 1 62 8 57255143 57255161 TTCTTCTCTGCAACTGGCT 59 57254054 57254075 CTTTGATCTTGTTTCCTTTCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858,ENSRNOT00000074723 3 2 2 104 2 113606044 113606953 AGAGACACTTGTGGGAAGC 60 113605958 113605976 AATATGGACCAAGGAGGGC 59 NA Rattus norvegicus 81 Pld2 ENSRNOG00000019604 ENSRNOT00000056998 3 1 1 80 10 57163212 57163230 CTACCTGAACTCCAGCCAG 60 57163273 57163387 ATTCGATCAGCTGGATCCTC 60 NA Rattus norvegicus 81 Lrrc28 ENSRNOG00000023274 ENSRNOT00000033858 3 1 1 80 1 128501733 128501754 TACCTTTGTCTACCCTAAGCTC 59 128487855 128501694 AAGCCAATACTTGTCCTCCTC 60 NA Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 1 1 1 80 2 140588899 140588920 TTGATAAATCGACTTCCTCCTG 58 140586235 140588858 CGGCAACATAAACCCTCTC 59 NA Rattus norvegicus 81 Hebp1 ENSRNOG00000000024 ENSRNOT00000000025 2 1 1 80 4 168932954 168932973 GATCAGGAACTCACTGTTCG 58 168922832 168932911 TAGGAGACGTCTTCCTTGC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 3 2 2 80 1 178759842 178767267 TGTGAACAGGATCCCACAC 60 178767311 178767329 TCTGTACTTGGCAGTTCCG 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 3 2 2 80 7 134664499 134667680 AAATTTCTGAGTTTGAGGCGG 60 134667722 134667740 CGTCCGTTGTGTTTGACTC 60 NA Rattus norvegicus 81 Mut ENSRNOG00000050843 ENSRNOT00000075279 3 1 1 80 9 23330213 23330233 TCATCAAAGAACTTAGTGCCC 58 23325372 23330172 ATTCATAATCCTGTGGTGGG 57 NA Rattus norvegicus 81 Usp16 ENSRNOG00000001598 ENSRNOT00000002173 1 1 1 80 11 27110307 27110326 CTGAAGCACTACACAACACC 59 27110369 27111962 CTTGTAACACCAGACGCTC 59 NA Rattus norvegicus 81 Wnt3 ENSRNOG00000003845 ENSRNOT00000005176 2 1 1 125 10 91830820 91864994 TACCCAATTTGGTGGTCCC 60 91865083 91865101 CTCGATGTAATTGCGGCAG 60 NA Rattus norvegicus 81 F2r ENSRNOG00000048043 ENSRNOT00000074626 2 1 1 83 2 26122019 26135190 ACAGCCAGAATCTGAGAGG 59 26121954 26121973 TCTTCACTGGGATTCCTGAG 59 NA Rattus norvegicus 81 Ftsj1 ENSRNOG00000004776 ENSRNOT00000006365 3 1 1 80 X 14999303 14999321 CAGGGTTATGACCCTCCTG 59 14999362 14999904 CAGCTGGTTGAAATCGTATGAG 60 NA Rattus norvegicus 81 Mael ENSRNOG00000003790 ENSRNOT00000005060 2 1 1 80 13 84448881 84448902 ATTGGCTGTGTCAAATATTCCC 59 84447325 84448840 TCGTGGAATTTCACCTGGA 59 NA Rattus norvegicus 81 LOC689031 ENSRNOG00000047990 ENSRNOT00000070960 1 1 1 60 2 45620406 45620425 TGGCACCGAGAATTATATCC 57 45620448 45620466 TGTAAGGGTCTTCCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 2 2 2 81 13 74513361 74513379 TTACGCCAGAAGAATACGC 58 74492351 74512354 CTTGAAAGTTCATCTGGCTG 57 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076208,ENSRNOT00000055235 1 2 3 115 1 167321103 167321121 CTGCTCAAGATCCCTCCAG 60 167321199 167323703 CTTGTCAGACTCAAAGCCAC 59 NA Rattus norvegicus 81 Adm2 ENSRNOG00000029830 ENSRNOT00000044854 3 1 1 144 7 130297297 130297897 GACTGAGACCCAGAGAACC 59 130298005 130298023 AGATGAACCGTAGCAAGGG 60 NA Rattus norvegicus 81 Akap13 ENSRNOG00000010964 ENSRNOT00000014802 3 1 1 80 1 137280370 137284258 GAGAAACAAGTCTTCACAGCC 60 137284300 137284318 AACATTGGTGCAGCAATGG 60 NA Rattus norvegicus 81 AABR07036505.1 ENSRNOG00000052647 ENSRNOT00000041732 3 1 1 80 12 45319943 45320516 GTCTACATACAGAAGCCTGTG 58 45320650 45320668 GGGCTGAAGTATGTGTACC 58 NA Rattus norvegicus 81 Slco5a1 ENSRNOG00000008966 ENSRNOT00000011940 2 1 1 80 5 5920968 5935706 GAATGTCAGAGACCTACCGA 59 5935748 5935767 GCTGTGTATGACAGACTCAC 58 NA Rattus norvegicus 81 Sv2c ENSRNOG00000018094 ENSRNOT00000024459 3 1 1 80 2 26536341 26536360 GAGATTGAGAGTGACACAGG 58 26535036 26536300 AGTCAACCAAATTCCGTACAG 59 NA Rattus norvegicus 81 Ldoc1l ENSRNOG00000021671 ENSRNOT00000039588 2 1 1 60 7 125465648 125465666 GGCCGAGCTAACTCTACTG 60 125465606 125465624 TGGAGTAATCTGCAGAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam169b ENSRNOG00000022822 ENSRNOT00000040147 3 1 1 80 1 129278835 129278854 ACTGTACCGTGATGAACCTC 60 129278895 129297204 AAGTAAACAGCCACAACTGTC 59 NA Rattus norvegicus 81 Sycp2l ENSRNOG00000023831 ENSRNOT00000038180 2 1 1 80 17 21447802 21450030 CTGAGAAAGATGAAGCCGAG 59 21447741 21447762 CAGAAATGTTTAGAGGAGTGGA 58 NA Rattus norvegicus 81 Fam24a ENSRNOG00000026035 ENSRNOT00000036128 2 1 1 93 1 201914119 201914138 GCTAGCACTTTGCTGATAGC 60 201914194 201915022 CTTCCCTTGCGCATTTCAG 60 NA Rattus norvegicus 81 AABR07009890.1 ENSRNOG00000050470 ENSRNOT00000075039 2 1 1 79 2 115159310 115160088 TATGTGGTGACAGCAGTGG 60 115159249 115159268 TAGTACATGGGAGTGTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc9a1 ENSRNOG00000007982 ENSRNOT00000011049 2 1 1 80 5 151614212 151614232 GAGATCCACATCAATGAGCTG 59 151614274 151617620 GTAGAGGACCACAGTGACG 60 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792,ENSRNOT00000010549 3 2 2 104 7 13014383 13014401 GGCAGTGTCTGAAAGACAG 59 13014723 13015359 AGTATACAGAAGGCCAATACAG 58 NA Rattus norvegicus 81 Casp7 ENSRNOG00000056216 ENSRNOT00000080511 3 1 1 80 1 277234016 277236513 TTAGACGAGCCTCTGAAGAG 59 277236555 277236574 TCAGATTCTCTTCTCCGTGG 59 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 3 1 1 80 4 175745749 175747630 GATAAACGATGAGTGTGAAGTG 58 175747671 175747689 CCTAATCCTCGGAGAAGGT 58 NA Rattus norvegicus 81 Wdr24 ENSRNOG00000019713 ENSRNOT00000026697 1 1 1 80 10 15194511 15194608 TCATCACCAATGAGGATAACGA 59 15194649 15194667 CCTCTCCTTCTACGTCACC 59 NA Rattus norvegicus 81 Sgsm3 ENSRNOG00000018745 ENSRNOT00000025382 3 1 1 80 7 122231571 122231682 ACCTACAGGTTGGATGAAGAC 60 122231798 122231816 GGTCACATTCACAGACTGC 59 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 1 2 2 80 2 96497889 96497907 TCCTTTGGGAAACAAACCT 57 96488699 96497845 GACTTGGTGTTAGCTCCTG 58 NA Rattus norvegicus 81 Zscan22 ENSRNOG00000031113 ENSRNOT00000026305 3 1 1 60 1 65681052 65681072 GGAGGATATGACTCAACTGCT 59 65678680 65678698 CTCTTCACGGTCCATTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Phf8 ENSRNOG00000002708 ENSRNOT00000045708 3 1 1 80 X 21088742 21088762 GTAAACCATTGAAGACTGGGA 58 21088803 21091689 GAATCACTTCGTCTGAGCTG 59 NA Rattus norvegicus 81 AC106438.1 ENSRNOG00000059517 ENSRNOT00000084409 1 1 1 122 7 13466502 13466523 GTCATGTACACTGTAGTTACCC 58 13466398 13466417 AAGTAGGGAAGGTGGACTC 58 NA Rattus norvegicus 81 LOC360933 ENSRNOG00000029734 ENSRNOT00000048329 1 1 1 80 14 41430610 41430628 GAAGCAGAACTACAGGGAC 58 41430672 41433861 ATACCGCTCCAGAATTCCT 58 NA Rattus norvegicus 81 Abat ENSRNOG00000002636 ENSRNOT00000003633 1 1 1 80 10 7097344 7097362 CACCTTCTGTTCCTTCGAC 58 7094491 7097300 AGTACCACACCTTTGTTCC 57 NA Rattus norvegicus 81 Grk4 ENSRNOG00000011847 ENSRNOT00000015894 3 1 1 80 14 81273482 81273502 AGTGAAGACTGAAACTGAGGA 59 81270725 81273442 TCCTTGGTAAGTAACATGCTG 58 NA Rattus norvegicus 81 Hmg1l1 ENSRNOG00000051482 ENSRNOT00000086591 2 1 1 60 19 59984848 59984866 TGGTCAAGGCTGAGAAGAG 59 59984806 59984825 TCTTCATCCTCCTCGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh3g ENSRNOG00000055572 ENSRNOT00000081819 1 1 1 80 X 157008023 157008044 CCAATAAGAACATTGCTAACCC 58 157008084 157008190 CATAGGAATGGAGCTTGAGG 58 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678,ENSRNOT00000016205 3 2 2 80 7 143792699 143792717 GGAGGTGCTGAAGAAACTC 58 143792232 143792656 TTAGAGATGGAACCACCAGG 59 NA Rattus norvegicus 81 Prkab1 ENSRNOG00000001142 ENSRNOT00000001508 1 1 1 82 12 46325450 46325675 CTATCAAGGATGGAGTGATGG 58 46325719 46325737 TATGGGCTTGTAGAGGAGG 58 NA Rattus norvegicus 81 Prkab1 ENSRNOG00000001142 ENSRNOT00000001508 3 1 1 84 12 46325450 46325675 CTATCAAGGATGGAGTGATGG 58 46325720 46325739 CATATGGGCTTGTAGAGGAG 57 NA Rattus norvegicus 81 Hes7 ENSRNOG00000007391 ENSRNOT00000009757 1 1 1 80 10 55708172 55708190 CCTAGAAGAGCTGAGGCTG 59 55708783 55708801 ATCTCTGCTTTCTCCAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 2 2 2 80 3 1389540 1389558 ATCCTGGGTGTTCAAGGAG 59 1389600 1389825 GTTCACTGGCTCAAGTTTCAG 60 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 3 2 2 80 10 56228461 56228666 GATCAGTGAAGAAGCCCTG 58 56228709 56228728 GCTGGAATAATCTCTGCCAC 59 NA Rattus norvegicus 81 LOC683849 ENSRNOG00000050493 ENSRNOT00000043527 1 1 1 80 4 70758556 70758933 TAGCTTTGGTGTCAATGAACC 59 70758975 70758993 TAGGAGGCTTCACAGTCAG 58 NA Rattus norvegicus 81 LOC683849 ENSRNOG00000050493 ENSRNOT00000043527 2 1 1 80 4 70758557 70758933 AGCTTTGGTGTCAATGAACC 59 70758975 70758994 GTAGGAGGCTTCACAGTCAG 60 NA Rattus norvegicus 81 Rybp ENSRNOG00000005353 ENSRNOT00000007185 2 1 1 88 4 132740747 132740765 CTGCACCTTTAGGAACAGC 59 132694063 132740696 AATTGATGCGAGGTTTCCTG 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 2 2 2 80 1 89182310 89182330 CAGAACATCATCCCATCTTCC 59 89182120 89182270 TCCTGTTAACTTCCCATTGAG 58 NA Rattus norvegicus 81 Fam168b ENSRNOG00000023467 ENSRNOT00000039480 1 1 1 86 9 41321591 41331510 ATATCCAGCTGGTTTCCCT 58 41321523 41321541 GTTTGGAAGGTAGGGTTCG 58 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000085355 3 1 2 84 2 207277445 207277463 CATGGCAAACAGGATCAGC 60 207277510 207279006 CAGATTCCTGGAGTTCTCCC 60 NA Rattus norvegicus 81 Olr1108 ENSRNOG00000010804 ENSRNOT00000014337 3 1 1 60 7 140055062 140055080 AGTCATTGTGCTCTTGGCT 60 140055103 140055122 GTAGTGGTGAATGGTGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc12 ENSRNOG00000008595 ENSRNOT00000011454 3 1 1 80 8 53786269 53788682 GTGCATTGACAACGAGGAG 59 53786207 53786225 GAGTCCATGAAGGAAGGCA 59 NA Rattus norvegicus 81 AABR07033579.2 ENSRNOG00000061897 ENSRNOT00000061600 1 1 1 89 11 28945593 28945611 AACTACTATGGCGGCAGAG 59 28960840 28960858 GTAGGAGCCATAGCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Smad9 ENSRNOG00000000091 ENSRNOT00000000102 3 1 1 80 2 144197398 144202224 CACATTGGAAAGGGTGTGC 60 144202268 144202286 GACAAAGATGCTGCTGTCG 60 NA Rattus norvegicus 81 Tpcn1 ENSRNOG00000059344 ENSRNOT00000083890 3 1 1 80 12 41560169 41560188 GCAATAAGACCAAGGTGGAG 59 41560230 41560809 CAAACAAGGTCACAAAGCTG 58 NA Rattus norvegicus 81 LOC100364265 ENSRNOG00000012088 ENSRNOT00000072844 3 1 1 80 5 16781929 16781948 TACAACACATGCATGCAGTG 60 16780117 16781888 TACTGCAGCCTTCTGTAACTC 60 NA Rattus norvegicus 81 AABR07066949.1 ENSRNOG00000046783 ENSRNOT00000064279 2 1 1 97 9 23597021 23600993 ACTGAAGGAAGGGTACTGC 59 23601054 23601072 TGAGAGTCAGTCTTGTGCA 59 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 1 2 2 80 1 69618885 69626051 CCTTATATCCTCACTGGTTTATCG 59 69626088 69626108 GCTTCAGTTTGTGAAAGACTC 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 2 2 2 80 1 69618886 69626052 CTTATATCCTCACTGGTTTATCGG 59 69626088 69626109 TGCTTCAGTTTGTGAAAGACTC 60 NA Rattus norvegicus 81 Cep44 ENSRNOG00000010566 ENSRNOT00000014083 1 1 1 80 16 37182471 37182494 CTGATGGAATCCAATATAGAGCTC 59 37182528 37183662 CTGATCACGAAGAAGCTTATAGAC 59 NA Rattus norvegicus 81 Cep44 ENSRNOG00000010566 ENSRNOT00000014083 3 1 1 83 16 37186680 37186699 GATGAGTTGGAAGAGCAGAG 58 37186744 37187678 ACACATATCTTGCAGCTCAG 58 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199,ENSRNOT00000087771 1 2 2 80 1 178953442 178953464 GTAAAGGATCGTGATGAGTTTCC 60 178944644 178953402 TTCCTGCGTTACCTGTCTC 59 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199,ENSRNOT00000087771 2 2 2 80 1 178953442 178953462 AAAGGATCGTGATGAGTTTCC 59 178944642 178953400 TCTTCCTGCGTTACCTGTC 59 NA Rattus norvegicus 81 LOC687707 ENSRNOG00000042847 ENSRNOT00000067919 1 1 1 81 10 57240304 57240322 GACAGCCTCCTTAGGACTG 59 57240365 57240478 GGCTGAGATCTCTAACAAGGT 59 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 2 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804059 GCATTGGTCATCTTGTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390,ENSRNOT00000080945 1 2 2 80 X 156925670 156925688 TCTCTTGCTCCTCATCCTG 59 156925732 156926064 TCCTCCTTGTCCTTCACTG 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 1 2 2 80 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493105 14493126 AAGATGTGTTGAGATGGATCCA 60 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799,ENSRNOT00000019555 1 2 2 80 14 81670404 81670422 TCGGGAAACAACTTCAACC 58 81667710 81670360 ACGATTTCATCTCCAACGG 58 NA Rattus norvegicus 81 Nuf2 ENSRNOG00000002711 ENSRNOT00000003650 2 1 1 80 13 87825477 87826240 TTAAAGGAGAGCCTGAACCT 58 87825416 87825436 GGAGTTCTCTTCAGTCTTCAG 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 104 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820730 99821415 TTGGGATCTGCTTCCTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sprr4 ENSRNOG00000042266 ENSRNOT00000066614 3 1 1 61 2 192697632 192697650 CAATGTCCAGCAAAGAGCA 59 192697589 192697607 TCTTGCTGTGCAGTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfml2a ENSRNOG00000014034 ENSRNOT00000018853 2 1 1 80 3 23242080 23242099 AGGCTTCACCTACTACAAGG 59 23242142 23243359 CCTTTGAGGGTGTTGTCAG 58 NA Rattus norvegicus 81 Phf19 ENSRNOG00000018874 ENSRNOT00000025528 1 1 1 80 3 13960669 13960687 TCAGACGTGGATTCTACCG 59 13959470 13960626 TACTGTCCATCTGGAGTCCT 59 NA Rattus norvegicus 81 Zfp398 ENSRNOG00000006703 ENSRNOT00000008743 1 1 1 80 4 77535726 77536084 TCTCATCTCCATGGATTATGC 58 77536124 77536144 TCATCTGTACTGTGTTCTCCT 58 NA Rattus norvegicus 81 Lmbrd1 ENSRNOG00000012178 ENSRNOT00000016887 1 1 1 80 9 31037017 31037036 ATTCCTCCACAAGTTCTGGT 59 31037078 31037436 AATCCGATCAAGAACACCAC 58 NA Rattus norvegicus 81 Lrig2 ENSRNOG00000019957 ENSRNOT00000027042 1 1 1 80 2 206937933 206938962 AGTATCACAAACACAGAGGAG 58 206937873 206937891 CGGTTCAGACAATGTTCCT 58 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653,ENSRNOT00000081878,ENSRNOT00000006727 3 3 3 80 14 72338054 72339039 TTGATGAAGATGAGATCACTGC 59 72337995 72338015 ACTTGCTTTCTGCTTTATGGG 59 NA Rattus norvegicus 81 Srsf7 ENSRNOG00000027360 ENSRNOT00000038448 1 1 1 80 6 2883612 2883631 CTAGATCACATTCCCGATCC 57 2883470 2883569 ATGCTGATCTTGACCTCCT 58 NA Rattus norvegicus 81 Ctnnd2 ENSRNOG00000010649 ENSRNOT00000044871 1 1 1 80 2 83543795 83683506 ATGAGCAGCATCAGTTCAG 58 83684123 83684143 TGTGAGTTCATCTTCGATGTC 58 NA Rattus norvegicus 81 Crim1 ENSRNOG00000004208 ENSRNOT00000005983 2 1 1 80 6 956478 958965 ACCTCCCTAGAGATATGGGTC 60 959004 959025 CCAATGATGAGTCTTCACTTGG 59 NA Rattus norvegicus 81 Sox10 ENSRNOG00000011305 ENSRNOT00000015283 1 1 1 83 7 120401467 120401485 AAGTTAGCCGACCAGTACC 59 120397380 120401420 ACTCTCGTTCAGCAACCTC 60 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829,ENSRNOT00000015718 1 2 2 80 19 16914728 16955431 GGAGAGTGTGACAAATGCC 59 16914666 16914685 GCAGACAGAATTTCACTCCT 58 NA Rattus norvegicus 81 Rbx1 ENSRNOG00000058914 ENSRNOT00000086603 3 1 1 88 7 122703499 122705871 ATGGATCTTTGTATCGAGTGTC 58 122705920 122708668 AAAGCGTGGTTACAGACTC 58 NA Rattus norvegicus 81 Msh2 ENSRNOG00000015796 ENSRNOT00000021538 1 1 1 80 6 11230001 11249055 CTTTAGATATGGATCAGGTGGAG 58 11229943 11229962 CTTCTCTTAGCTCACTCAGG 57 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025633,ENSRNOT00000025600 2 2 2 80 2 205848586 205850291 CCTGTATGTTGAGCAGTCC 58 205850335 205850353 AGGTATCCAGCTCACTCTC 58 NA Rattus norvegicus 81 Ubn2 ENSRNOG00000005564 ENSRNOT00000064175 2 1 1 80 4 66200629 66207503 TCTTCTAGACATCGAGTTACAGC 60 66207541 66207561 ACAAATGCTTCAAGATGGGAG 59 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 3 2 2 94 13 89300246 89300761 CTGTCCAAGAGTTGTTCGC 59 89300170 89300188 CTTTGTCTCACAGCTCAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000085389,ENSRNOT00000014230,ENSRNOT00000083233 3 6 10 88 10 87122196 87126967 GACCCAGACGATTATGATGAC 58 87122128 87122146 AGGATCTCACTGATGAGGC 59 NA Rattus norvegicus 81 Spag1 ENSRNOG00000010078 ENSRNOT00000013801 1 1 1 80 7 75046287 75048370 CCATCTATACAAACAGGGCTC 58 75048412 75048430 GAAGTGCCTTGTCACAGTC 59 NA Rattus norvegicus 81 Nsmce4a ENSRNOG00000020452 ENSRNOT00000027721 3 1 1 80 1 201099862 201099882 CATGTTTCCTTCATCATACGG 57 201097288 201098600 AATCACGGGCTCTATTATTGG 58 NA Rattus norvegicus 81 AABR07051565.1 ENSRNOG00000053188 ENSRNOT00000058260 1 1 1 76 3 17180427 17180448 CTTTAGAGATGGAGACAGACAC 58 17180725 17180743 CACAATGTCACCAGTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563231 ENSRNOG00000047571 ENSRNOT00000074382 1 1 1 60 3 16999685 16999703 CAGACTCCTGCTATGGGTG 60 16999402 16999420 CAGTACAGTGTCACCAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 1 2 2 80 4 66418796 66420754 TTGACCCAGACACATTCAC 58 66420798 66420816 GACACTCTGTTGACACCAG 58 NA Rattus norvegicus 81 Foxi1 ENSRNOG00000006293 ENSRNOT00000009058 2 1 1 109 10 19163958 19163977 TACAACAAGAGCAAAGCTGG 59 19162247 19163886 TAATTCCCTTTGCCTGGGT 59 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000048561 ENSRNOT00000065935 1 1 1 80 X 158216382 158216405 GCGCTGAATAGAAATAGTGATAGG 60 158210289 158216346 TGACTGGTCATTACAGTAGCTC 60 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000048561 ENSRNOT00000065935 2 1 1 80 X 158216379 158216403 GCTGAATAGAAATAGTGATAGGTCC 59 158210287 158216344 GTTGACTGGTCATTACAGTAGC 59 NA Rattus norvegicus 81 Neu4 ENSRNOG00000019031 ENSRNOT00000065533 2 1 1 106 9 101285029 101286507 GCTATTGCTTTACGCTCCC 59 101286577 101286595 GTCAGACCAGTCCTTTCCC 60 NA InUTR Rattus norvegicus 81 Cyb5r4 ENSRNOG00000010024 ENSRNOT00000013908 2 1 1 80 8 94745234 94745555 ATGTCCAGTCTCAGGAAGG 58 94745598 94745617 TTTCTCTAGCTGGCATCTCC 59 NA Rattus norvegicus 81 Zfp341 ENSRNOG00000017086 ENSRNOT00000047286 2 1 1 88 3 150148897 150148916 GCTACCAACAGCATCTACAC 59 150148966 150150274 ATGTATGTGGAGATCTGGCG 60 NA Rattus norvegicus 81 Lin54 ENSRNOG00000002203 ENSRNOT00000003006 3 1 1 80 14 10794845 10811040 GAAGTCACCAAATAAGACAGTG 57 10811081 10811099 ATGGTCTTAAACTGCGACG 58 NA Rattus norvegicus 81 Dbx2 ENSRNOG00000006885 ENSRNOT00000009143 1 1 1 80 7 136974582 136974603 CAGAAGCAGAAATACATCAGCA 59 136967518 136974542 AATCTTCACCTGTGACTCCT 58 NA Rattus norvegicus 81 Tmem50b ENSRNOG00000002028 ENSRNOT00000002775 2 1 1 81 11 31730169 31730187 TGTATCCTAAGCCTGAGCA 58 31727437 31730126 GCATTTATCATGAAGAAGGCC 58 NA Rattus norvegicus 81 LOC102550668 ENSRNOG00000033487 ENSRNOT00000048673 2 1 1 60 19 33130418 33130438 TTGTAGACATCAAGGGAATGG 58 33130460 33130478 CCATGGTAACACTTGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq2 ENSRNOG00000002194 ENSRNOT00000002987 3 1 1 85 14 10597129 10599757 CTCACCAGATTTACACCGTG 59 10599805 10599823 CAGGAGTAGGCCTACTGTG 59 NA Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 3 1 1 106 8 22949707 22951083 TGTCTTCGTGGAGTCTGTG 59 22951153 22951171 TGTCGTAGCAGAAGAAGCC 60 NA Rattus norvegicus 81 LOC500876 ENSRNOG00000004914 ENSRNOT00000006510 1 1 1 60 7 100382184 100382202 CACTCCAATGTCCAGACCA 59 100382142 100382160 TAGTAGTCAGCAGGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aurkc ENSRNOG00000015825 ENSRNOT00000021245 2 1 1 80 1 69962333 69963166 CAGTCGCACTTACAACACC 59 69962271 69962292 TTCCAGAATTAAGTACACCCGA 59 NA Rattus norvegicus 81 Cnep1r1 ENSRNOG00000015534 ENSRNOT00000020816 3 1 1 80 19 19904119 19904142 GATTAGCTGTATAACGCTGATAGG 59 19903455 19904083 CGAGCAGCTATAATTGATGGTG 60 NA Rattus norvegicus 81 Adamts4 ENSRNOG00000003538 ENSRNOT00000004713 3 1 1 82 13 89626147 89628791 CAATGGCTATGGACACTGC 59 89628836 89628855 CATCATAGTCCTTGCCAGGA 59 NA Rattus norvegicus 81 Utp15 ENSRNOG00000016591 ENSRNOT00000022259 2 1 1 80 2 28364191 28364212 CATTCTGACTATGTGAGGTGTG 59 28363544 28364154 CACGGTATGATCATATGATCCTG 59 NA Rattus norvegicus 81 Apoa1 ENSRNOG00000045679 ENSRNOT00000074357 1 1 1 84 8 50525606 50525624 TGGATGCAGTCAAGGACAG 60 50525671 50526239 AGGAGATTCAGGTTCAGCTG 60 NA Rattus norvegicus 81 Adamts17 ENSRNOG00000037080 ENSRNOT00000055877 3 1 1 80 1 127882791 127882809 ATGCTGCTGTGTTTGTGAC 59 127887907 127939773 CTAAGTAAGCAATTCCAACGGT 59 NA Rattus norvegicus 81 AC112531.1 ENSRNOG00000031588 ENSRNOT00000047649 3 1 1 80 2 148800802 148801575 AGCATGCAGAGTCTTTCAG 58 148800740 148800759 ACCCATACAATATTGCTGGT 57 NA Rattus norvegicus 81 Gls2 ENSRNOG00000031612 ENSRNOT00000018737 2 1 1 80 7 2619651 2619670 TTCCACAACTACGACAACCT 59 2619713 2619904 GGTCTTGTTCCGAACTTCC 59 NA Rattus norvegicus 81 Slc44a2 ENSRNOG00000031824 ENSRNOT00000049973 2 1 1 80 8 22383299 22384535 CTGTTTCTTGGAGGATCTGG 58 22384577 22384596 AGGAGTTTCTTGAGAGTGGA 58 NA Rattus norvegicus 81 Snx25 ENSRNOG00000011116 ENSRNOT00000014828 3 1 1 80 16 49369433 49369453 CTTACGAGGAGTTCATCAAGC 59 49369491 49383813 CCACTACAATTTGATACCTGAGC 60 NA Rattus norvegicus 81 Cept1 ENSRNOG00000017723 ENSRNOT00000036551 1 1 1 80 2 209121640 209121661 TCCTGTACAAATTACTTCCGTG 59 209121196 209121599 AAGGACACTTGTTCCTGCT 59 NA Rattus norvegicus 81 Tbk1 ENSRNOG00000005528 ENSRNOT00000009260 3 1 1 80 7 63659111 63659129 CAGTGGAATCAAGCACACC 59 63658794 63659069 AGCTTCTTCATACCGAGAGTC 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 2 2 2 80 2 210866782 210866803 CTGACCTACAGGAATTTGTAGC 59 210866509 210866744 GGTAGCAGAATGACTTTATGGG 59 NA Rattus norvegicus 81 Vom2r27 ENSRNOG00000048635 ENSRNOT00000036807 2 1 1 80 1 64681128 64681146 AAGTGCTCCAAAGGAACAG 58 64680023 64681084 GACTGTGGAATCTCTGTCG 58 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 2 2 2 107 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844134 147844155 TCGTTAACAAGCTCTAGTTTGG 59 NA Rattus norvegicus 81 AABR07037412.2 ENSRNOG00000047165 ENSRNOT00000073114 1 1 1 80 X 20223163 20223182 CCCTGGAGACTTTCAAACTG 59 20223224 20223581 CAAGATCCACGTTTGGAGAG 59 NA Rattus norvegicus 81 Gp1ba ENSRNOG00000025959 ENSRNOT00000035445 2 1 1 89 10 57260752 57260960 TTTCTGCCTGACTGTTCAC 58 57261013 57261031 TTGGAGACATCACAAGTGG 57 NA InUTR Rattus norvegicus 81 Spon2 ENSRNOG00000006033 ENSRNOT00000008262 2 1 1 91 14 82820545 82821148 GTGACTGAGATAACCGCCT 59 82821203 82821221 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 Sdc3 ENSRNOG00000011927 ENSRNOT00000048781 1 1 1 189 5 148951970 148951988 CACAGCCAATGAAGTGGTG 60 148952141 148952782 TACGATCACAGCTACGAGC 59 NA Rattus norvegicus 81 Sdc3 ENSRNOG00000011927 ENSRNOT00000048781 3 1 1 191 5 148951970 148951988 CACAGCCAATGAAGTGGTG 60 148952143 148952784 CCTACGATCACAGCTACGA 59 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000056551 1 1 2 80 10 58866750 58868883 CCCACATGAAACAGTGTTCG 60 58868926 58868944 GAAGGGTTGAGGGAAGGAC 60 NA Rattus norvegicus 81 Zfhx4 ENSRNOG00000008765 ENSRNOT00000011641 3 1 1 80 2 98448688 98456248 CAGCCTCAGAAGAACTCAG 58 98448626 98448646 GTGTCTCTTTCTCATCATCCT 57 NA Rattus norvegicus 81 Fbxo39 ENSRNOG00000014953 ENSRNOT00000020071 3 1 1 80 10 58877485 58877504 GGACGTTAAGTTTGTGGAGC 60 58877544 58878136 TAAATTCTCACCTTCAGTGTGC 59 NA Rattus norvegicus 81 Wiz ENSRNOG00000006217 ENSRNOT00000008303 1 1 1 80 7 14400948 14400966 ATCTTCACACTACCTGCCC 59 14388442 14400905 AAGTTAGCCACAGAAATGCC 59 NA Rattus norvegicus 81 LOC499746 ENSRNOG00000010002 ENSRNOT00000013278 1 1 1 80 3 2434195 2434216 TTACATCAATGGAGGCAAACAC 60 2434037 2434154 ACAGTAGCATTGGACTGGG 59 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 3 2 2 80 11 38082811 38083311 TGCTTTGGAAGTTCTGGGA 59 38082749 38082768 GGGAGGAGCTGATACATGTC 60 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000006849 2 1 2 86 13 90401210 90401228 CATCTTCCTGCTTTGCCTC 59 90391586 90401160 TTCAATCGACAGCTCCCTG 60 NA InUTR Rattus norvegicus 81 Adprhl2 ENSRNOG00000010849 ENSRNOT00000014586 1 1 1 80 5 144337594 144337612 CTGAAGAAGGTGGGAGAGC 60 144337111 144337550 AGCGATTCCATTCCCTAGC 60 NA Rattus norvegicus 81 Dfnb59 ENSRNOG00000038165 ENSRNOT00000058093 1 1 1 80 3 63510439 63510458 CAAATTCACATCCACACCCT 59 63510498 63511326 TGATAAGATGAAATACCGGCTG 58 NA Rattus norvegicus 81 Serpinb10 ENSRNOG00000002417 ENSRNOT00000003314 2 1 1 159 13 27469107 27469125 ATCCATCAACCAGTTCGCT 59 27469246 27471410 ATGAAGTACCTGGGACATCTG 59 NA Rattus norvegicus 81 LOC680236 ENSRNOG00000048486 ENSRNOT00000071886 2 1 1 80 X 22791132 22791150 GAGGCAAAGAGGTTCTGTG 59 22791192 22791760 CTCAAATGAGACAGGATGCTG 59 NA Rattus norvegicus 81 LOC100366054 ENSRNOG00000033515 ENSRNOT00000046076 1 1 1 84 13 88299522 88300018 TGTGACTGCTACATTCAGGAG 60 88300064 88300082 TCTTGAGGACATCCAGCAC 59 NA Rattus norvegicus 81 Gfap ENSRNOG00000002919 ENSRNOT00000034401 1 1 1 80 10 90992755 90992774 AAATCTGTGTCAGAAGGCCA 60 90992186 90992712 CTCCTTAATGACCTCGCCA 59 NA Rattus norvegicus 81 Srsf4 ENSRNOG00000010007 ENSRNOT00000013301 2 1 1 80 5 150050599 150050618 TGAACGAGTCATTGTTGAGC 59 150050660 150051439 CGATAACCATATCCACTGCG 59 NA Rattus norvegicus 81 Atp1a2 ENSRNOG00000007290 ENSRNOT00000058143 2 1 1 80 13 90659018 90659487 AGTCAATCCCAGAGAAGCC 59 90658956 90658974 ATCTCATCCAGCTGCTCTG 59 NA Rattus norvegicus 81 Capza1 ENSRNOG00000013538 ENSRNOT00000056015 3 1 1 81 2 207322417 207322438 CATTTGCCCAGTATAACATGGA 59 207321634 207322379 CCATGCTCTGTAATTAAGACCTG 59 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 1 1 1 90 7 144648436 144648929 AATTCACGTTAGCACGGTG 59 144648983 144649001 TAATTCCAGGACCTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Mecom ENSRNOG00000012645 ENSRNOT00000068381 1 1 1 80 2 117401490 117402338 CCCGTGAGGTATAAAGAGGA 58 117401429 117401449 TTTGAGGCTATCTGTGAAGTG 58 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639,ENSRNOT00000091418 2 2 2 80 2 27317833 27319362 TTGCCTATTCGAAAGGTTTCTG 59 27317774 27317794 TTCTGTGCAAGTAACAATCCC 59 NA Rattus norvegicus 81 Ly9 ENSRNOG00000025069 ENSRNOT00000035498 3 1 1 80 13 90020102 90020122 CCTACCAGGCTCAAATAATCC 58 90016695 90020061 GTAGCTGCTCATAGATGTGC 59 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 1 2 2 80 10 88162498 88162516 ACTGTGGATAATGCCAGCA 59 88162059 88162454 CGTCTCAAACTTGGTACGG 59 NA Rattus norvegicus 81 Elmod2 ENSRNOG00000028176 ENSRNOT00000031614 3 1 1 80 19 24478700 24484279 GACATATTCCAAGAGTAAGGTCC 59 24478642 24478661 ATGATGTCCACTATGCACCT 59 NA Rattus norvegicus 81 Ces1a ENSRNOG00000039725 ENSRNOT00000060929 3 1 1 80 19 15358965 15358984 AAGAACTTCAACACTGTCCC 58 15359027 15360744 ATAGCCCATCATCGTTGGA 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 3 2 4 80 13 91222602 91227124 GAAGTGATTTCTGACTGGCT 58 91222541 91222560 ATGGCACCTTAATGTGATGG 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445,ENSRNOT00000071516 1 2 2 80 X 159183001 159183743 AAAGAACAGCTACAGAAAGGG 58 159182941 159182962 TCTTTCCTGTTCCTTCTTTCTC 58 NA Rattus norvegicus 81 LOC684444 ENSRNOG00000045818 ENSRNOT00000071167 3 1 1 60 2 29247845 29247863 GCTGGCTAAACTTGCTGTG 60 29247803 29247824 TTAGGAATGGATGAATCTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brs3 ENSRNOG00000000873 ENSRNOT00000001164 1 1 1 80 X 159505724 159505742 TTCATCCGGCTCACTTCTG 60 159505783 159507348 CTTCACGACTGCTTTGTATCTG 60 NA Rattus norvegicus 81 Kif7 ENSRNOG00000026857 ENSRNOT00000033491 1 1 1 80 1 141443937 141443957 TACATCAGAGGAGGAAGAGGA 59 141443476 141443897 CAGTTGCTGATTCCATTCCTG 60 NA Rattus norvegicus 81 Erich6 ENSRNOG00000013662 ENSRNOT00000018294 1 1 1 80 2 148831549 148837199 GTGACTGTAGATAGACTTATGTACC 58 148831493 148831512 AAGCCAACTTTGGTCTTCTG 59 NA Rattus norvegicus 81 Pnrc1 ENSRNOG00000007793 ENSRNOT00000010271 2 1 1 104 5 48503990 48504008 CCTGCTATACAGACAGCCC 60 48502477 48502496 TGTATACCATGCACAAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Sh2d7 ENSRNOG00000023870 ENSRNOT00000029413 1 1 1 80 8 59117390 59119094 TGAGGAGAGTACAGAGGTACC 60 59119136 59119154 CCTGCAGAAGAGTCATCCA 59 NA Rattus norvegicus 81 Eif1b ENSRNOG00000018848 ENSRNOT00000025615 1 1 1 80 8 129158303 129159538 ACCTCCAATCTTTCGACCC 59 129159579 129159600 TATGAATGTAGTCCTCAGTCCC 59 NA Rattus norvegicus 81 Casq1 ENSRNOG00000006930 ENSRNOT00000009344 3 1 1 80 13 90598613 90599262 GAGTTTCTGCTCGATGTCCT 60 90598552 90598572 CTCGATGTTCTCAAATGCCTG 60 NA Rattus norvegicus 81 Pcsk7 ENSRNOG00000017478 ENSRNOT00000023677 3 1 1 80 8 50204234 50204253 CAGGAGAAATTGCAGCTGTG 60 50204296 50206197 CCCGGATACCTGCTATTCG 60 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000047302 ENSRNOT00000061556 3 1 1 80 14 3332065 3339617 TTTCCAAGGATGATTGTGACC 59 3332005 3332027 GATAATCCTGACTCAGGTAAAGC 59 NA Rattus norvegicus 81 Cst3 ENSRNOG00000005195 ENSRNOT00000007175 1 1 1 80 3 143220857 143220877 GAACTACATGTACCAAGTCCC 58 143219982 143220815 AGAGTGCCTTCCTCATCAG 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000002379 ENSRNOT00000003235 3 1 1 95 X 158094072 158132623 CCAGAAGGAGAATCCCTTCC 60 158132679 158132699 ACCTCCTAGGAACTTGATGAG 59 NA InUTR Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327,ENSRNOT00000076818 2 2 2 104 20 46429963 46429982 TTCAAGGATAAGGGCGACAG 60 46505776 46505794 AGTCCCTTCGTTCTGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Cfap97 ENSRNOG00000032192 ENSRNOT00000045721 2 1 1 80 16 49298216 49309702 TCATCTGTTGAAAGCTTTCCTG 59 49298157 49298179 CTAGGTATTATTGAAGGCTGCTC 59 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076211 1 1 3 60 20 47159155 47159175 GATACACCGCCTTAAACAGAG 59 47159115 47159135 GTACGACTTAGCCATGAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255,ENSRNOT00000092045 1 2 2 60 3 77152830 77152849 CGACAACTCTGTAACATCCT 57 77152872 77152890 TACCTGCATGAAGAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lce1c ENSRNOG00000009383 ENSRNOT00000012420 1 1 1 167 2 192960173 192960191 CAAAGTGTCCTCCCAAGTG 58 192960024 192960042 TACAGCATCCAGAGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lce1c ENSRNOG00000009383 ENSRNOT00000012420 2 1 1 172 2 192960173 192960191 CAAAGTGTCCTCCCAAGTG 58 192960019 192960037 ACTGCTACAGCATCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl9 ENSRNOG00000049571 ENSRNOT00000075258 1 1 1 60 7 18311369 18311388 AACCATCTTACTGCCTTCCT 59 18311411 18311429 CCTGTTGCAATGAGAAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910143 ENSRNOG00000050374 ENSRNOT00000075415 1 1 1 80 14 1570120 1573690 AAGGAAACAATGGTTCAGCAC 60 1570060 1570078 CAATGTACGTGGCAACTGG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 2 3 6 80 10 89221805 89221824 TCCATTACTTACCACAGCCC 60 89218042 89221764 TCAATAAATGGCTCCTCTCCT 59 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 2 2 2 80 2 153862098 153865396 AGAAATCAGATCGTCTTCCC 57 153865437 153865457 CCCATAGTTCAATGAGTTGGA 58 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 2 2 2 99 3 166987073 166987091 GTGTTGACTGTGCAGAAGC 60 166985501 166987010 GCCTCTTTCCTTCAAGGGA 59 NA Rattus norvegicus 81 Rad9a ENSRNOG00000018729 ENSRNOT00000025317 1 1 1 80 1 219449331 219449716 TAAGATCCTGATGAAGTCCTTCC 60 219449273 219449291 GAGATGCAGCACTTCTCCA 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 1 1 1 80 13 37404004 37407323 TTTCGACAAGGTAGTAGGAGG 59 37407364 37407383 TCCTGAAAGAGCAAATCCAC 58 NA Rattus norvegicus 81 Stk3 ENSRNOG00000011278 ENSRNOT00000065722 3 1 1 80 7 73848834 73848856 GAGTGAAGACAGTTTGACTAAGC 60 73846756 73848797 ACACTTCCATAAGACCCTTCTC 60 NA Rattus norvegicus 81 Olr78 ENSRNOG00000015760 ENSRNOT00000021098 2 1 1 60 1 168238491 168238512 GCTTACACCAAGATGTTCTGAG 59 168238531 168238551 CCATAGACACTGTTGATCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx1 ENSRNOG00000001520 ENSRNOT00000002078 3 1 1 80 3 58166578 58166598 CAAACTCAGTACCTAGCTCTG 58 58166638 58167838 CCATATCTTGACCTGAGTCTG 58 NA Rattus norvegicus 81 LOC681006 ENSRNOG00000025953 ENSRNOT00000039453 3 1 1 81 1 279938156 279938178 ACCCTTCTCCTAAAGTCTTACAG 59 279938012 279938115 CTTGGGAGTGTTTGACCTG 58 NA Rattus norvegicus 81 Tceal3 ENSRNOG00000049020 ENSRNOT00000071874 2 1 1 60 X 107323592 107323610 CTTACAGGACAGGCATGTG 58 107323632 107323652 CCTTGTCATATCTGCACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364989 ENSRNOG00000037452 ENSRNOT00000056688 1 1 1 81 X 159097014 159097032 TCAGGCCATCTTCGATCAG 59 159097075 159099627 GGACTTAAGCTCAATGAGACC 59 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025279 2 1 2 265 8 128842058 128842076 GAGGACTGGATCTGCTGTG 60 128842514 128842533 GGCTGTTTAGACTTCTGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 2 3 3 120 20 5050802 5050820 CCTCCTGAGGAATCACTGC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 2 2 2 80 2 210443538 210444065 GCTACAACACAGGCTTTGG 60 210443476 210443495 AGGAAGCAAGTACACATCCT 59 NA Rattus norvegicus 81 Ppwd1 ENSRNOG00000012505 ENSRNOT00000016863 3 1 1 81 2 34295009 34295028 GAAACGAGTTTCCGACAGTG 60 34293100 34294965 CTTGGGACACTCAACAGGA 59 NA Rattus norvegicus 81 Ankrd37 ENSRNOG00000031335 ENSRNOT00000039909 1 1 1 101 16 49463462 49464338 CAACCAACAGGATGTGTTGG 60 49464402 49464420 TCAATCCGGACATCACTGG 60 NA Rattus norvegicus 81 Gpatch8 ENSRNOG00000021044 ENSRNOT00000050474 1 1 1 80 10 90452609 90452630 GAACAGATCCTATTCCAATCGT 58 90451886 90452568 CTTCGGCATAATCCAGCTC 59 NA Rattus norvegicus 81 B3galnt1 ENSRNOG00000012019 ENSRNOT00000016012 1 1 1 80 2 166228471 166231375 CTGTGGTTAAGGACCTGTG 58 166228409 166228427 CCTATTGGGAATGGCAGTC 58 NA InUTR Rattus norvegicus 81 Nelfa ENSRNOG00000015474 ENSRNOT00000021593 3 1 1 81 14 82114293 82114317 CTGGATATTTCTGAGCTGAATACAG 60 82114352 82114811 CTACCACTTCTGTGTCTAAAGTC 59 NA Rattus norvegicus 81 Nktr ENSRNOG00000049128 ENSRNOT00000071152 1 1 1 80 8 130385530 130385548 GGAAGGAGGAGATGCAGAG 59 130385591 130386737 GGTCACTTAGCTTGTCTCCT 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 1 2 2 80 2 137325786 137325806 CAAATTATACGACCAGTGGCT 59 137325339 137325746 TCTAGAAGACTCTTCACTGCT 58 NA Rattus norvegicus 81 LOC501033 ENSRNOG00000013399 ENSRNOT00000018553 2 1 1 92 8 96977748 96982847 ATCAAAGGAGGCAGACAGG 59 96977674 96977692 CTGAACACCTGTTCCACCA 60 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 3 1 1 60 1 248403080 248403099 ATGATCCCTATGAGGAGCAC 59 248403119 248403140 GGGCAATTCCAGTTAATGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tiparp ENSRNOG00000011238 ENSRNOT00000015387 3 1 1 83 2 157335647 157340394 CATATTTACAGACACTTGGTGG 57 157340436 157340456 CATCTGGACAGATGATTTGTG 57 NA Rattus norvegicus 81 Pdcl3 ENSRNOG00000013286 ENSRNOT00000017882 3 1 1 80 9 45678362 45679257 CCTGTACAAACAAGGGATTCC 59 45679298 45679317 TTCACATCGGGAAACTTCCT 59 NA Rattus norvegicus 81 Ube2s ENSRNOG00000016930 ENSRNOT00000022977 3 1 1 82 1 72580546 72581164 TGTTGAAGTCATGAACTCCA 57 72581209 72581227 CTGTCAGTGTTGTCACCTC 58 NA InUTR Rattus norvegicus 81 Nkd1 ENSRNOG00000014293 ENSRNOT00000019301 1 1 1 80 19 19443853 19445639 CAGCTCAAGTTTGAAGAACTG 58 19443793 19443813 GTCATACAGAGTGAAAGTCCA 58 NA Rattus norvegicus 81 Tatdn1 ENSRNOG00000047198 ENSRNOT00000070909 1 1 1 84 7 98792757 98792779 GAGAAGAAATAGAGATCGGTGTG 59 98790590 98790612 AAGGTCCAAGTCCAAAGCA 60 NA Rattus norvegicus 81 LOC100910447 ENSRNOG00000003863 ENSRNOT00000005270 1 1 1 128 19 26143080 26143098 AATCAGAAGAGGAAGGGCG 60 26145458 26145736 TGTTAATACCTCATCCTCCGTC 60 NA Rattus norvegicus 81 Mfsd9 ENSRNOG00000023129 ENSRNOT00000038915 1 1 1 80 9 47499446 47506974 TCAATGCTGGTCTAGTCTGG 59 47499385 47499403 TCTGATCCAAGCTCCAACC 59 NA Rattus norvegicus 81 Ndufv1 ENSRNOG00000018117 ENSRNOT00000024517 1 1 1 80 1 219255268 219255373 TGAGAAACATGCTGGTGGT 60 219255206 219255224 ATCAGTGGAGTGGATGAGC 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000027641,ENSRNOT00000076592 2 2 3 138 1 167337327 167347639 AGGTCACTACTTCCAGTGG 58 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grb14 ENSRNOG00000052498 ENSRNOT00000089243 2 1 1 80 3 50937812 50939051 CACTTTCAAATTATACCCGTGG 58 50937753 50937774 GAGATCTGTGAACTTCGTATGG 59 NA Rattus norvegicus 81 Rplp2 ENSRNOG00000002116 ENSRNOT00000038691 2 1 1 123 1 213991629 213991647 GTTGCCTCTTATCTGCTGG 58 213991732 213992429 CACTGATGACCTTGTTGAGTC 59 NA Rattus norvegicus 81 Ptx3 ENSRNOG00000012280 ENSRNOT00000016541 1 1 1 77 2 158098108 158098126 AATGGACTTCATCCCACCG 60 158098593 158098611 GATGAACAGCTTGTCCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Tsks ENSRNOG00000020443 ENSRNOT00000049584 2 1 1 80 1 100947076 100948054 AGTCAATTGAAGGAGAACTGC 59 100948095 100948114 GTTCTGCTTCAGGACATTGG 59 NA Rattus norvegicus 81 LOC100909517 ENSRNOG00000046230 ENSRNOT00000068228 2 1 1 60 X 24629618 24629639 AGGGTCAGCATAATCAAATCCT 60 24629654 24629678 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm50 ENSRNOG00000037638 ENSRNOT00000057096 1 1 1 80 1 85475363 85475471 TTACAGACAGATGATCATCGAG 58 85475512 85475530 TAAGGTGGCTGGTAGTAGG 58 NA Rattus norvegicus 81 Olr98 ENSRNOG00000033060 ENSRNOT00000045286 1 1 1 60 1 168519888 168519906 GCACTACTCAACCATCCTC 58 168519930 168519948 GCTCAAGCCAATTACACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1471 ENSRNOG00000061453 ENSRNOT00000072328 3 1 1 80 10 60020293 60020312 CTATGATGTGCACAGTGGTG 59 60020229 60020252 GTAGTGCCTCTTTCATGTCTC 59 NA Rattus norvegicus 81 Psma5 ENSRNOG00000019868 ENSRNOT00000026928 1 1 1 80 2 211062533 211067207 GAAGTTTACCACAAGTCTATGACTC 60 211067244 211067263 CTTCTCCTCCATGACTTGCT 60 NA Rattus norvegicus 81 Cpq ENSRNOG00000005931 ENSRNOT00000008211 1 1 1 80 7 71880403 71880427 AAAGACCTATCCAGATACAGATTCC 60 71880465 71975573 ACCAGGACAACTTCCTCTG 59 NA Rattus norvegicus 81 Bbs12 ENSRNOG00000007510 ENSRNOT00000009898 1 1 1 60 2 124054768 124054787 GGCTGTTGAAGATTGTCTCC 59 124054808 124054828 TGACATCACTGACACTATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055506.1 ENSRNOG00000046725 ENSRNOT00000073906 2 1 1 80 7 4519006 4519025 CCCTCTGCTAAGCAAAGGA 59 4519067 4519087 ACAACTTCCATAGGTGATGGA 59 NA Rattus norvegicus 81 Osbp2 ENSRNOG00000019645 ENSRNOT00000065501 2 1 1 80 14 83957712 83967151 ATGATCAACGCCTGTAAGGA 59 83957651 83957670 CTGCTCATAATTCAGAGCCC 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 2 3 3 80 1 219856718 219857179 TGGTCTTCAAGTTCTGTGAG 58 219857222 219857240 TTGGCAGGTAGTTAAGGGA 58 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 3 3 3 80 8 26434150 26447688 GGTAGTAGGTGAATCTGGACTG 60 26447723 26447747 GGATACTCTGGAGAATACAAATCTG 59 NA Rattus norvegicus 81 Olr378 ENSRNOG00000031224 ENSRNOT00000044719 3 1 1 60 1 230664589 230664611 AGTATCTGTCTTCTACACTGTGG 59 230664551 230664573 TCTCAGGGTATAGATAAGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 1 2 2 80 9 43077782 43078065 CACGTACACTGACAATCGA 58 43078109 43078127 TTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 LOC679811 ENSRNOG00000009837 ENSRNOT00000013260 2 1 1 80 2 182920564 182922866 GGAAACATGGAAATAACCAGC 58 182920504 182920525 GCTTTGTATCAACTGCTTTCAC 59 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453,ENSRNOT00000061657 2 2 2 80 7 3378809 3378827 CCACTCTACAGCTTTGACC 58 3378870 3379099 CATGTACTCCTCCAGAAAGG 57 NA Rattus norvegicus 81 LOC100361231 ENSRNOG00000029588 ENSRNOT00000042579 3 1 1 80 1 217725407 217725426 AGCTCCTTGTCTATAGAGCA 58 217725469 217728104 CGATGTCGACTCTTCTTGG 58 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381,ENSRNOT00000010180 3 2 2 80 7 3334504 3334526 CATCTTCCTGTCTCTTATCATGC 59 3334566 3334675 TCTGACTTCACCTGGTCTC 58 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000003251 1 1 2 60 10 76164135 76164700 GCAGATCATTCAGGAGTTGC 59 76164094 76164112 ACCCTCCGTTACCAAAGTG 60 NA DesignRelaxed Rattus norvegicus 81 Hmg1l1 ENSRNOG00000034130 ENSRNOT00000047553 1 1 1 60 X 115351210 115351231 GATGCTTCTGTCAACTTCTCAG 59 115351252 115351270 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmsb4x ENSRNOG00000047931 ENSRNOT00000071708 2 1 1 86 X 28594521 28594542 GAAGAAGACAGAAACACAAGAG 57 28594985 28595003 CCTCATTACGATTCGCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 1 2 3 113 2 210782716 210782734 CTGGGTTACTGGGACATCC 60 210782033 210782371 GTCATAGTCGGGAGCATCC 60 NA Rattus norvegicus 81 AABR07012054.1 ENSRNOG00000049530 ENSRNOT00000074187 3 1 1 76 2 184230682 184230701 GTTCATCCATTCACCACAGC 60 184230740 184230758 ACATTCCTTGGGACAGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 1 1 1 60 1 167884167 167884187 GCTGAAACGACTGAACTACTG 59 167884127 167884148 ATGGAAACAGAATGAGTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 2 1 1 60 1 167884395 167884415 GTTTGACTATCGCTTCATCGG 60 167884355 167884375 GGAGTGTAGGAAGAACATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029943.1 ENSRNOG00000031597 ENSRNOT00000047762 1 1 1 86 10 60684721 60684739 GTACACAGTGGTGACTCCC 60 60684652 60684676 CAGATAACTCTTAGGCTTAAAGGG 59 NA Rattus norvegicus 81 AABR07029943.1 ENSRNOG00000031597 ENSRNOT00000047762 3 1 1 87 10 60684722 60684740 TGTACACAGTGGTGACTCC 59 60684652 60684676 CAGATAACTCTTAGGCTTAAAGGG 59 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000086769 3 1 2 80 14 83054458 83061087 GAATTTCCCAGGTGACAGAG 58 83054397 83054417 CTACATTCTTGTAGGCCACAG 59 NA Rattus norvegicus 81 Olr698 ENSRNOG00000006445 ENSRNOT00000008435 3 1 1 60 3 78235671 78235692 TCTGTTTGTCACATTCTTGCTC 60 78235632 78235650 CATGATGAGCAGATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf11 ENSRNOG00000007610 ENSRNOT00000010035 1 1 1 74 7 3315394 3315412 GAGACGGTCATAAGCATGG 58 3310967 3310985 GAAATGGCAACACAGAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 1 2 2 80 1 213516907 213516925 GACAAGAAGTGTCTGAGGC 58 213516968 213517313 ATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Erich3 ENSRNOG00000009533 ENSRNOT00000012638 2 1 1 80 2 261004126 261010972 CTGCTTGAGAAAGACACCT 57 261011014 261011034 CCCATTCAGATAGAAGGTGAG 58 NA Rattus norvegicus 81 Rasal1 ENSRNOG00000001374 ENSRNOT00000001856 1 1 1 80 12 41431397 41431664 ACAGTTCATGAAACTCGTGG 59 41431336 41431354 TTCTTCTCCTCGAAGACGC 60 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000047779 1 1 3 86 20 4772559 4772671 CAGAGATGGGAGCCTTCTC 59 4772491 4772509 TACAAAGACAGCCACAGCT 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 2 3 3 80 9 51469350 51469368 CTTGGCAGTACTGAAGTGG 58 51469412 51479677 GTGTCTTGCAAACTTCAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144,ENSRNOT00000080695 1 2 2 80 14 82275648 82275666 AGAAGCTATTGGCATCGAC 58 82275505 82275605 TCAGTGGCATCATCTTTCAG 58 NA Rattus norvegicus 81 Nlrp5 ENSRNOG00000022994 ENSRNOT00000041542 1 1 1 80 1 71476978 71476996 GGGTGGATATCAGTGACCT 58 71474094 71476934 GCTTGCATTGTGTCTTCTG 58 NA Rattus norvegicus 81 Olr1105 ENSRNOG00000032839 ENSRNOT00000051304 3 1 1 60 7 139953516 139953536 TCCTCAACATACTTCTGGCTG 60 139953476 139953494 AAGTGAGGGATGGTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mnt ENSRNOG00000002894 ENSRNOT00000003933 1 1 1 98 10 61692130 61692148 TTTGAGACTCTGAAGCGCA 60 61692209 61696950 CTTCAGGGACTGGATGTACC 60 NA Rattus norvegicus 81 Mnt ENSRNOG00000002894 ENSRNOT00000003933 3 1 1 104 10 61692130 61692148 TTTGAGACTCTGAAGCGCA 60 61692216 61696956 CTTCCTCTTCAGGGACTGG 59 NA Rattus norvegicus 81 LOC100360049 ENSRNOG00000046322 ENSRNOT00000030776 3 1 1 65 8 37349671 37349690 GAAAGGACATCTTGCTGCTC 59 37348786 37349644 ATGTCAAAGCTTGCATGGAG 59 NA DesignRelaxed Rattus norvegicus 81 Dcaf7 ENSRNOG00000042245 ENSRNOT00000063858 3 1 1 81 10 94242920 94243384 CCTTCTAGGAACCTCAAGCA 59 94243428 94243446 AAGGTTCACTCGTCCTAGC 59 NA Rattus norvegicus 81 Erlin2 ENSRNOG00000013763 ENSRNOT00000018973 2 1 1 80 16 69191699 69193733 TATTACAGAGGTGGTGCCC 59 69191637 69191657 CTTGTAGGATGTGATGAACGG 59 NA Rattus norvegicus 81 Pkd1l1 ENSRNOG00000004865 ENSRNOT00000006498 2 1 1 80 14 89144747 89144765 CCTCAACCTCCATCATCCT 59 89141839 89144705 AAGTCCAGTGATACCTGAGAG 59 NA Rattus norvegicus 81 Txndc9 ENSRNOG00000018593 ENSRNOT00000025098 1 1 1 80 9 44654524 44656404 AGCAGAAACAAGAATGGCT 58 44654462 44654482 TGACCTCTTGAAAGAAGTCTC 57 NA Rattus norvegicus 81 Taok1 ENSRNOG00000015692 ENSRNOT00000021368 1 1 1 80 10 62570797 62570819 GAGATGTGCGTACTAATGAAGTG 60 62570855 62574803 TATCCTGCCATTTCTCAGTAGAC 60 NA Rattus norvegicus 81 Taok1 ENSRNOG00000015692 ENSRNOT00000021368 2 1 1 80 10 62577492 62579365 GATCCATAGAGATATCAAAGCAGG 59 62579403 62579422 GAAGCAGATCCAAAGTCAGC 59 NA Rattus norvegicus 81 Ankrd13a ENSRNOG00000001204 ENSRNOT00000001595 1 1 1 80 12 47567513 47567533 AACAATGTGAGCGTGATAACC 59 47566369 47567474 ATTCCGGTCCTCTTTGTATCTC 60 NA Rattus norvegicus 81 Xcr1 ENSRNOG00000006620 ENSRNOT00000008747 2 1 1 132 8 132915612 132919028 TCAGACTCAGATGCTCTCAG 59 132915499 132915519 GGACAATGGTGAAGATGATGG 59 NA Rattus norvegicus 81 Zbtb47 ENSRNOG00000019382 ENSRNOT00000043346 1 1 1 80 8 130405492 130405510 CCTTCAAGCGCAGTATGTC 59 130405554 130406451 CATTGCAGTTCTCACAGCG 60 NA Rattus norvegicus 81 Lppr5 ENSRNOG00000016878 ENSRNOT00000022905 1 1 1 80 2 219920087 219920108 GCAGAATATCGGAATCATTGGT 59 219910771 219920049 GCATACAACCAGAAATACTGCT 59 NA Rattus norvegicus 81 Lppr5 ENSRNOG00000016878 ENSRNOT00000022905 2 1 1 80 2 219920081 219920099 CGGAATCATTGGTCAGACG 59 219910762 219920039 ATTTACCACGCATACAACCAG 59 NA Rattus norvegicus 81 LOC684170 ENSRNOG00000048866 ENSRNOT00000067344 3 1 1 60 1 167992373 167992394 CATGAACCGATGTACTATTTCC 57 167992334 167992352 AAACAGTCAAACCCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 2 1 1 80 2 33918516 33918536 AACAACTGAGTGGATTGAGAG 58 33917925 33918477 GTCTCAAACTACCAATAAACCC 57 NA Rattus norvegicus 81 Ubxn8 ENSRNOG00000015109 ENSRNOT00000020347 1 1 1 80 16 62252736 62256592 CGAGTCTCGGAATTAAAGATCTC 59 62256631 62256650 CGGAAATGACGATCGTAAGC 60 NA Rattus norvegicus 81 RGD1563217 ENSRNOG00000036713 ENSRNOT00000047477 2 1 1 80 1 198266635 198267037 GACTGTAGAAACAGCACCC 58 198266573 198266592 GGCTTGTCTATGAAGAGCTG 59 NA Rattus norvegicus 81 Hirip3 ENSRNOG00000029061 ENSRNOT00000039964 3 1 1 80 1 198299041 198299060 AAGTTAAGAGGTCTCCTGCT 58 198299101 198299377 TAGAGCTGGATTCTGACTCTG 59 NA Rattus norvegicus 81 LOC691491 ENSRNOG00000045737 ENSRNOT00000048862 1 1 1 85 16 66381094 66381112 AGTGTCAATTCGAGAGGGA 58 66381161 66382521 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 3 2 2 82 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422288 126422309 GGAGCTCTACTTCTTTACACTG 58 NA Rattus norvegicus 81 LOC100361828 ENSRNOG00000039445 ENSRNOT00000060446 1 1 1 90 8 37025858 37026103 TTTGAAACAGGCTTCCCTG 58 37025786 37025804 CTCTTGTAGTGCACGTCTG 58 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000084336,ENSRNOT00000014152 3 2 2 83 1 131449145 131451942 TTCACCTCAGATGCCTGTG 60 131449080 131449100 GTACTCTTCCAAAGCACACTG 59 NA Rattus norvegicus 81 Ano10 ENSRNOG00000000219 ENSRNOT00000035371 2 1 1 80 8 130908249 130909426 TTTCCACGGTAACAATGATGAC 59 130908190 130908212 GCTCTAAGATTCTCAAGTTCGTG 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000048341 ENSRNOT00000071278 3 1 1 85 8 38396581 38397230 GCTTCCTACAAGCTCTGAC 58 38397276 38397297 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Semg1 ENSRNOG00000013776 ENSRNOT00000018420 3 1 1 81 3 160630129 160630387 TTGGACAGTATGGTGGGAC 59 160630066 160630085 AAATTGAGGTGGCCTTTCTG 59 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900,ENSRNOT00000077719 1 2 2 80 1 72880833 72881004 TCTCCTGTGGGATGATCCA 60 72881046 72881066 CTAATTCCACAACCAGGTTCC 59 NA Rattus norvegicus 81 Map3k6 ENSRNOG00000008936 ENSRNOT00000012463 2 1 1 80 5 151446185 151446313 ATCAGGAACAGGATTCTCGAC 60 151446353 151446373 TAGGAGTATGGATTTGTGCCC 60 NA Rattus norvegicus 81 Dph7 ENSRNOG00000008102 ENSRNOT00000046898 3 1 1 80 3 2171590 2173322 GATGGAATGTGAGAAGAACAGC 60 2173359 2173381 AGTGATAAGGATAGACAGCTCTC 59 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 2 2 2 82 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452301 21452321 TCCCATTTGACATATCTGACC 58 NA Rattus norvegicus 81 LOC100911807 ENSRNOG00000050492 ENSRNOT00000073395 1 1 1 80 8 118436696 118436715 CCTAGAGGAACTGGACATCC 59 118435422 118436653 TTATGAGCACAGGACAGGT 58 NA Rattus norvegicus 81 Cenpk ENSRNOG00000039740 ENSRNOT00000060962 3 1 1 80 2 34333968 34335211 GAATGAAATGTTAGAGGTCCCAC 60 34335249 34335269 TTCAAGAAAGTCTCACTGGGA 59 NA Rattus norvegicus 81 Ackr2 ENSRNOG00000019472 ENSRNOT00000026343 3 1 1 91 8 130538763 130541013 CAAGCATCAGAACTCGAGAC 59 130541066 130541085 ATAGTCGTAGATGGAGCTGC 59 NA InUTR Rattus norvegicus 81 Bsx ENSRNOG00000024438 ENSRNOT00000028909 2 1 1 153 8 45063979 45063997 AAAGGTTCGAAATCCAGCG 59 45065121 45065139 GCTTTGGGTTCGTCTTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000077635 1 1 8 81 20 4443811 4443829 GACTACCAGGTCACTGTCC 59 4443872 4444024 CATCGATCATGGTAGTGATGG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000082951 3 1 8 80 20 4458296 4458316 TACAGATTCCTCCTCTATGGG 58 4458356 4458515 ATTCATCGACTCTGTGTTACC 58 NA Rattus norvegicus 81 RGD1309821 ENSRNOG00000023208 ENSRNOT00000033235 3 1 1 94 5 57878700 57878859 GAAACAAGGACATCAGCACG 60 57878625 57878644 CTTCTCCTGAAGGTTCTGGG 60 NA InUTR Rattus norvegicus 81 Rpl38 ENSRNOG00000029377 ENSRNOT00000046518 3 1 1 60 8 63119488 63119507 GTAAAGTTCAAGGTCCGCTG 59 63119528 63119548 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lingo1 ENSRNOG00000017193 ENSRNOT00000023084 2 1 1 155 8 61290096 61290114 GTTGTAGGAGGAGACGGAG 59 61276194 61276212 TGGGCATGCTTCTCATACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp445 ENSRNOG00000025554 ENSRNOT00000034690 2 1 1 80 8 131892193 131892489 AGAACACCAGGAAACTTTGAC 59 131892133 131892152 TGAGCTGAGTTCAAACATCC 58 NA Rattus norvegicus 81 Ndor1 ENSRNOG00000010616 ENSRNOT00000014445 1 1 1 83 3 2474438 2474729 TTACTCCGTGGCGAATCTC 60 2474373 2474391 ATGTTGTCAGGAGGGTCTC 59 NA Rattus norvegicus 81 Ndor1 ENSRNOG00000010616 ENSRNOT00000014445 2 1 1 84 3 2474426 2474444 GAATCTCATTAGGGAGCCC 57 2471356 2474380 CCAGAAGTTCTTCATGTTGTC 57 NA Rattus norvegicus 81 Adgra2 ENSRNOG00000012991 ENSRNOT00000017776 3 1 1 80 16 69106990 69107184 GACTTCTCAGACTAAACATATCTGG 59 69106934 69106952 TCTTAAGGTCTGGCAGCTC 59 NA Rattus norvegicus 81 Ostm1 ENSRNOG00000037647 ENSRNOT00000057116 2 1 1 82 20 47427654 47427672 TCTCTTTCTGCCTGTCGTC 60 47427717 47429844 GACGTTTGGGTAGAATGAGC 59 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000051720 1 1 2 106 16 60419348 60427279 TGTACCGGACTTCTAGCCT 60 60419260 60419278 ATCTTGAAGGTGAAGCGCT 60 NA InUTR Rattus norvegicus 81 LOC688390 ENSRNOG00000026080 ENSRNOT00000038842 1 1 1 60 20 47911382 47911400 GAATGTCCCTTAGCCAGGT 59 47911424 47911442 AAAGCTTCCTGGCAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdfy4 ENSRNOG00000029662 ENSRNOT00000043811 3 1 1 80 16 9273759 9273779 GTTTGTGAGAACTTCACTCTG 57 9268272 9273719 GAAAGGATCGCTGATATTGGA 58 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114,ENSRNOT00000055839 2 2 2 80 5 159566215 159566600 TGATCTCAGTGCCAGAGTG 59 159566153 159566171 TTGACCTGGTCCTTCTCTG 59 NA Rattus norvegicus 81 Cd99 ENSRNOG00000050735 ENSRNOT00000073028 1 1 1 88 20 56196903 56196921 GATAACCTTGGCGCTACTC 58 56195759 56196141 TCTTGTCAGTGTCCTCCAG 59 NA Rattus norvegicus 81 Snrpd2l ENSRNOG00000048758 ENSRNOT00000071064 3 1 1 62 20 28873328 28873346 ACCCAAGAGTGAGATGACC 59 28873284 28873302 CCTGTGTTGAATTCCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367195 ENSRNOG00000031912 ENSRNOT00000050963 2 1 1 60 8 132026811 132026830 GAAGCTCATCTGTGAGAAGG 58 132026770 132026788 AGTCCGGTACATCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 3 1 1 71 16 49186079 49186322 ACAGAGTTCCGGGAAACTG 60 49186357 49186375 GAATGCAGAGCTCTGAGGT 60 NA DesignNoJunction Rattus norvegicus 81 LOC690386 ENSRNOG00000042383 ENSRNOT00000068374 2 1 1 89 20 11545901 11545919 CTGTGTTCCTTGCTGTGTC 59 11545830 11545848 CAGATGAGAGTCAGGCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 2 1 1 60 20 915294 915314 ATCCTTCTCTGTCACAATTCC 58 915336 915354 TATGTAGCCACTTTGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 3 1 1 60 20 915294 915314 ATCCTTCTCTGTCACAATTCC 58 915335 915354 TATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr3 ENSRNOG00000006736 ENSRNOT00000008809 1 1 1 80 8 133038387 133038442 GGTCTTGCAGTATTGGCAG 59 133038486 133038504 ACTGCAGGAAAGATCTCCA 58 NA Rattus norvegicus 81 Defb10 ENSRNOG00000038148 ENSRNOT00000058059 2 1 1 80 16 75198326 75208181 ATGACACTCCAGTTGTTGG 58 75198264 75198282 AGAACCCTTCAAAGAGTCG 57 NA Rattus norvegicus 81 Fut10 ENSRNOG00000050857 ENSRNOT00000071166 2 1 1 84 16 64698047 64703839 GTGACAGTCCAGGTAGTGG 59 64697981 64698001 CATCTTTCTGTCCATCTTGCA 59 NA Rattus norvegicus 81 Sobp ENSRNOG00000000316 ENSRNOT00000000348 2 1 1 81 20 47893698 47893716 AAAGGACCATGGCAATGTG 59 47860758 47893653 TGACACCTCATCTTCTGCT 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000084375,ENSRNOT00000087712,ENSRNOT00000087134 3 4 4 80 3 56871799 56872980 CTGTTTGCTCAAGATCTGCT 59 56873022 56873041 GAGTATGTCAACCACCTCCA 59 NA Rattus norvegicus 81 Msr1 ENSRNOG00000012779 ENSRNOT00000017339 3 1 1 80 16 56875151 56883394 TGTTGGAATAGTAACAGCTCAG 58 56875092 56875113 GATGTATCACTTGTGTTAGCTG 57 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000051315 3 1 2 81 20 979579 1108981 GGAAATGCTTAGAGATGAGTGTC 59 979520 979538 AACTTGGCAAATGCAAAGC 58 NA Rattus norvegicus 81 Olr1682 ENSRNOG00000050389 ENSRNOT00000075114 3 1 1 81 20 528608 528628 ACCCTCATAATGAATCAGCGT 60 438096 528565 CCACTGTGACACCATAGGT 59 NA Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 2 1 1 80 3 91100382 91122611 CAGATGAACAAGGATTGGATGG 60 91100323 91100342 AGCAGGAACATAAGCAGGAG 60 NA Rattus norvegicus 81 Tmem50a ENSRNOG00000017279 ENSRNOT00000023221 1 1 1 80 5 153246933 153246954 ATATGGAGCAATTCAACCACTC 59 153244091 153246895 TCGATACTGCGTTAATCATGAG 59 NA Rattus norvegicus 81 Defb40 ENSRNOG00000033538 ENSRNOT00000048827 1 1 1 103 16 75702396 75705335 AGATGAACTCAGGTGCTGG 59 75705401 75705420 ACAGGTGCTGATTAGAACGA 59 NA Rattus norvegicus 81 Defb40 ENSRNOG00000033538 ENSRNOT00000048827 2 1 1 103 16 75702395 75705334 CAGATGAACTCAGGTGCTG 58 75705401 75705419 CAGGTGCTGATTAGAACGA 57 NA Rattus norvegicus 81 Defal1 ENSRNOG00000029462 ENSRNOT00000049394 1 1 1 80 16 75367198 75367791 AAGATTTACGCGTAAGAAGGAC 59 75367832 75367850 TTGATAGCCGAATGCAGCT 60 NA Rattus norvegicus 81 AC111257.2 ENSRNOG00000052837 ENSRNOT00000091296 3 1 1 82 16 81011191 81013411 ATTTCTGCTGGAGCATCAC 58 81011127 81011145 CGTCTGCAATCATGTTTCC 57 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 1 2 2 84 3 162368309 162371014 GCTCTTTGCGAAGTCTCAC 59 162371062 162371080 TGTGCTGTACTGTGTCTGG 60 NA Rattus norvegicus 81 Ube2l6 ENSRNOG00000030467 ENSRNOT00000044319 1 1 1 80 3 72202122 72205563 AGGCCTATCAAGTCTTGGAG 59 72205606 72205624 CAGCTAGTTCCAAACGCAC 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000038809 2 1 3 80 3 150877551 150877680 CTTAACAAGGTCGTCACTCC 58 150877490 150877509 ATCCAACACCTCAGATTCCT 59 NA Rattus norvegicus 81 Pla2g2f ENSRNOG00000016798 ENSRNOT00000022559 1 1 1 86 5 157194942 157195757 ATGAGATGGACTGGTGCTG 60 157194874 157194892 CATAGTGGTCCACGTAGGG 59 NA Rattus norvegicus 81 Rbm39 ENSRNOG00000049814 ENSRNOT00000065729 3 1 1 80 3 152242768 152245567 TTCTCTACAGTAGGAAAGGTTCG 60 152242710 152242729 CACATAGGCGATTCCTTTGG 59 NA Rattus norvegicus 81 Tgif2 ENSRNOG00000042374 ENSRNOT00000066341 3 1 1 82 3 152913433 152921917 GTGCTGCAGATATGTAACTGG 59 152921961 152921979 TTAGGGTCTTTGCCATCCT 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392,ENSRNOT00000057740 1 2 4 80 16 81627234 81627256 ATCAGAGAAGACTCAGAAGTCAC 60 81627292 81627458 CCATTTCTTGTAGGTCTTGTCTC 59 NA Rattus norvegicus 81 Nipsnap3b ENSRNOG00000010332 ENSRNOT00000013759 1 1 1 80 5 69844214 69844233 TGGATGAACAAGAGGTTGAG 58 69844274 69847015 GTTCATAGACTCCTTCCTTGG 58 NA Rattus norvegicus 81 AC127963.1 ENSRNOG00000048080 ENSRNOT00000075547 1 1 1 75 3 173838962 173838980 AAGAAACTCCTGGCTGACC 60 173838758 173838776 TGATGTCTTCCTTCTCGGC 60 NA DesignNoJunction Rattus norvegicus 81 Lig4 ENSRNOG00000014605 ENSRNOT00000019615 2 1 1 113 16 85332096 85332115 ACTGGGATTTACAGGTTGCT 59 85334903 85334921 GAGCACAAGTCTGCAAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lig4 ENSRNOG00000014605 ENSRNOT00000019615 3 1 1 114 16 85332095 85332114 GACTGGGATTTACAGGTTGC 59 85334903 85334921 GAGCACAAGTCTGCAAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hoxd10 ENSRNOG00000001581 ENSRNOT00000002148 1 1 1 80 3 61614962 61616343 GAGAAGGAAAGCAAAGAGGA 58 61616386 61616404 CCTCTTCTTTCTGCCACTC 58 NA Rattus norvegicus 81 Atp4b ENSRNOG00000018543 ENSRNOT00000025958 3 1 1 96 16 81139507 81139525 CTACAGAATTGCTCAGGCC 58 81138524 81139447 GCAGGAACTTGACAATCCT 58 NA Rattus norvegicus 81 Sp5 ENSRNOG00000054086 ENSRNOT00000078819 3 1 1 130 3 56767854 56767872 TACCCTTACGAGTTCTCGC 59 56767966 56767984 GGTAGCAGGTTGGAGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf21a ENSRNOG00000006063 ENSRNOT00000067664 1 1 1 80 3 81262693 81262712 GAGACCACATTCACTTTCCC 59 81262754 81268003 CTCATGGATATCACCGTCTG 58 NA Rattus norvegicus 81 Erich1 ENSRNOG00000042114 ENSRNOT00000064468 3 1 1 94 16 80616338 80616356 AGACTCCAGCTTTGGACAC 60 80616411 80631365 GATCTTAATGTCACCAGCTGTC 59 NA Rattus norvegicus 81 Fam83c ENSRNOG00000046772 ENSRNOT00000073178 2 1 1 81 3 151367232 151367589 CAGTTACAGCTTCACTTGGC 60 151367170 151367189 AAAGTCTTCCACAATGTGGC 59 NA Rattus norvegicus 81 Defa24 ENSRNOG00000030524 ENSRNOT00000018529 1 1 1 88 16 75345276 75345912 AGATGCAGTCTTAAGAGATCTG 58 75345209 75345227 ATCTCTTGTTGCAGATCCC 57 NA Rattus norvegicus 81 Mybl2 ENSRNOG00000007805 ENSRNOT00000010343 1 1 1 80 3 159428234 159429633 GTCACTTTCCTAACCGCAC 59 159429677 159429695 ACGGTCCCTTAACAAGGTC 59 NA Rattus norvegicus 81 RGD1564899 ENSRNOG00000049942 ENSRNOT00000073370 3 1 1 60 16 8884108 8884129 TAGTTACAAATCCAAAGCACCC 59 8884069 8884087 GACACGTTTCCGAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcid2 ENSRNOG00000025222 ENSRNOT00000044085 1 1 1 80 16 81763124 81763143 CTCTCCAGAAGAGAAATGCC 58 81763183 81764061 GCGTAGGTACACCTTAAATGAG 59 NA Rattus norvegicus 81 LOC685135 ENSRNOG00000030778 ENSRNOT00000044934 3 1 1 66 16 48513577 48513595 CTGGTGTGATTAGCAAGGC 59 48513625 48513643 GGCACGTTCCCATTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 1 2 2 80 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699125 TGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943 3 1 2 82 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138352974 138353583 GTGGGAACATTCTCAATCTTCC 59 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 3 2 2 104 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549974 34549992 CACATGGAATCGGAAGCTG 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843 1 2 5 80 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26444266 26444286 CATGGGTTCGTAACCATAGGA 60 NA Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 3 2 2 94 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777334 32777352 ACAGAAGAGGTGATGGACC 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007 1 1 2 122 8 47260904 47261433 AGAGCTGTGAACATTGTAGG 58 47259966 47259984 AACTTTCCTCCACCTTCTG 57 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 1 2 3 85 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657910 42657929 GGTCTTTATGTGCTTCACCC 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681 1 1 2 80 2 170238090 170238197 TTTGGGATACCATACATTGGAG 58 170238031 170238049 TTGCATCCAACGAGTACAG 58 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116 3 1 2 88 11 47263035 47263053 AGAACTCGGTGAAAGAGCT 59 47263103 47266325 AAAGGCACTCTTAAACTCGTC 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027 3 1 2 84 1 211989026 211989044 AGTCCTAGTTGCCCTTGAG 59 211988386 211988978 TTTCACCACCTGACCTAGG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 3 1 3 89 2 189440270 189450009 CTTGGAAGATAAGCTGAAGTGC 60 189450058 189450077 TACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000012334 2 1 2 80 3 6568400 6568420 AGTCTACTGCAATTTCACAGC 59 6568461 6570772 CAAGAAGTGATTCTGGCTCC 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817,ENSRNOT00000002220 3 2 7 108 11 46253393 46288169 CAAGAGTCAAACCTGCTCC 59 46248784 46248803 GTATGCAGGGATCCCTTAGG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859 1 1 7 80 11 46281535 46283465 CACAGTCAACAAAGGCTCC 59 46281473 46281492 GTACTTCTGGACTACGGGTG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859 3 1 7 80 11 46244235 46245638 AAGTGAAACTGTGCCTTTAGAG 59 46244176 46244197 TGTAGTTCCTCTTCACTAGGTC 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000079432 1 1 3 167 5 22764942 22765421 GAACACAGAGGCAAAGCAC 60 22761630 22764814 CCTAGCTTTCCTAGAACTTCCT 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839 3 1 2 100 1 86971001 86971021 TGACTCCAAGAAGGCTTACAG 60 86971191 86971289 CTTCCAGCTCCTTCTTCCA 59 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000020994 2 1 2 80 1 196960492 196961778 GTGGTACAACCACTTCCAG 58 196961821 196961840 AACAATAGGATGCAGATGCA 58 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228 2 1 2 80 6 26376040 26376060 GATTCTACTGGAAACCCTGCT 60 26375542 26376000 TCCAGAAGGCATCTTTGAGAG 60 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957 2 1 2 133 1 205712704 205712722 AAGATCCCAGTGCTTCCAG 59 205715295 205715563 TTTAAGACCCTGACTGTTCTCC 60 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496 3 1 2 81 1 243387009 243388119 TTAACGGCGGGTATGAGAC 60 243388163 243388182 TCACACTCGTCATCTGACTC 59 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 2 2 2 80 1 167461706 167461725 AACATCCACAAGCTGATGGA 60 167461766 167489720 GAGGTCTTCCCTTAGGAACTC 59 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 3 2 3 70 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383832 78383850 CAGATTTACCCACCAGGAG 57 NA DesignRelaxed Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 3 2 2 80 8 94900403 94904679 CAGAAACAGGTGTTTCTTATGG 58 94900344 94900363 GAGAATGAGCTACGTGATGG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 1 2 2 80 6 21988212 21989624 ACAGAAGGACAGAAGGAGTC 59 21988151 21988170 CCACGTAATCCAGTAACCTG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 2 2 2 80 6 21988515 21989623 CAGAAGGACAGAAGGAGTCC 60 21988454 21988473 GCCACGTAATCCAGTAACCT 60 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012295 1 1 2 84 8 63379309 63419557 TCAGAACGAACCAAGAATTGTC 59 63419602 63419620 AGTGAGGTTACACTGCAGG 59 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 1 2 2 82 9 85488990 85491057 CCATGAAGGTAGTATCGCCT 59 85488927 85488945 TGATGATGCTGTTGTCGGA 59 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248 3 1 2 82 2 148765593 148774433 TTTCAGATTTGTGTATCCGGG 58 148774477 148774495 ATGCGGATGTCTGGATACC 59 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 3 2 2 80 17 18418143 18420134 CAGTGGGATAAAGGACATCTC 58 18418083 18418102 AGGTCTTCCATTGATGTGTC 58 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000050393 2 1 2 83 1 188503092 188503111 CCATTTCTGGACATGTTCCA 58 188503156 188510283 AGTGAGAGCGTTGATAAAGG 58 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 2 2 2 80 1 100653094 100654313 CGAGACCTATCTGCTGGAG 59 100653032 100653052 AGCAGCTGGTAGAAGATATGG 60 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 1 2 2 80 15 39883053 39886438 TAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000067129 3 1 2 118 5 24589418 24589437 CTAATCTTAGCAGTGTCCCG 58 24578513 24589339 GTCTTTCAAACACTGGTAACC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183 1 1 4 81 6 52608437 52631087 GTCGTTCTAGAGAAGACACAG 58 52631130 52631148 TGATGTCCGGAGATTGGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000037255 3 1 10 80 2 231316679 231316697 CCAAGTATGGAAGCCTGGA 59 231314513 231316637 TATAGCCATTCTTCCCTGCTG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 3 6 7 103 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610921 215611167 GTTCATGTCTTCCAGCTCC 58 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 2 2 2 118 2 188657365 188657383 CTTCGAGTTCTTGCCTGGA 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 3 2 2 80 1 143379383 143381539 AGGACCAAGCAGAGTTCAC 60 143379321 143379341 ACTCATACTGGGTATTTGGCT 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849,ENSRNOT00000088647 3 2 4 92 9 117651351 117659910 CTGAGGAGACTAAACAATCTTCTG 59 117659960 117659979 TGAACTCTGTGGGTTTCCTC 60 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 2 2 2 84 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613274 AGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 3 2 2 80 1 177214071 177225636 AGAGGAGAAACAGATTCAGGG 59 177225675 177225696 TTTATTCTTCTCCAGAACCAGC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326 1 1 2 88 1 177183923 177183941 ACTTCAGTAAGGATCGGCC 59 177183993 177187237 GTATCAGAGCTGCTGTCCT 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000086644 3 1 4 99 10 39220333 39220352 GTAAGGATGACTGGAAAGCC 58 39211328 39220272 CTCCAGTCTCTGTCTGAGAG 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 1 2 2 80 15 48424775 48427702 TTCACAAGTATTACGCCTACC 58 48424715 48424737 CACAGTTGATATACTCATCCACC 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000083124 2 1 2 80 11 60532611 60536075 CCATGTGACAGAAAGGACTC 58 60528906 60528925 CTTCCTGCTAAGTCAGAAGG 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000078688 3 1 2 84 3 151359872 151359890 TGGAGAGTGTCTTCAAGCT 58 151359483 151359826 GTCAGTGATCTGTCAATGAGG 59 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000059494 2 1 2 84 17 43464378 43464509 CTCAAGAGGTACACTCGCT 59 43464557 43464575 TATGAAACCACAATGGCCC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967 3 1 2 85 13 96112231 96141612 CGTCTACGACATGTACTGGA 59 96141655 96141678 CTCTGCCATATACTTCAATTCCAG 60 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 1 2 2 81 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281198 140281216 AGGTCATGACCAGTTCCTG 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166 1 3 4 80 15 51925735 51925753 GGTAGTGAGAAGACCCTGG 59 51920812 51925691 ACAAACTGCAGGGTAACTG 58 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889 2 2 3 168 1 140855509 140857385 GTGAACTCGAGACCACCTC 60 140855359 140855377 AGGTGGTTGGAAAGATCGG 60 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000011770 2 1 2 81 4 174755802 174755822 AAAGAGGCTCTTCAGAAACAG 58 174757877 174760302 CTATAATCTGGACCCTCGCT 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108 1 1 2 80 10 56640027 56640047 AGATCAAACTCATCAAAGGGC 59 56640194 56640214 TGTTATCTCCAGGGATGCT 58 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000084304 3 1 2 84 17 16015793 16015811 AAGAGCAAATTGAAGGCGG 59 16015858 16016876 CAGACAAATGACCTGTGCTG 60 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894 1 1 2 81 9 10164921 10164940 TGTGCTTTGGTATACAACCA 58 10164662 10164880 CCCAAACATCCAAGATATTGTC 58 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 2 2 2 80 13 99428760 99428778 AGCTGCTGACAGAAATGGA 59 99418833 99428722 CAATGATATCTGGTCTATTAGTGGC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 1 1 6 80 1 282643685 282643704 AACATCTATACACCAGCCCA 59 282672490 282681785 TATAACCAGTGCACCACCA 59 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 1 1 2 69 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53234621 53234639 TTCTCTGAAAGCCAGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 2 2 2 80 19 23937398 23937796 GATCTTAGCATGTCAACACG 57 23937337 23937355 ATCATACCCAGAAGCTCCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000004614 2 1 2 81 19 23945416 23945435 TCAAGAAGTACCGTTGACCT 59 23944322 23944807 TATTCTTCTGCCGCCTCTG 60 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000004614 3 1 2 81 19 23945413 23945433 AAGAAGTACCGTTGACCTAGC 60 23944320 23944805 TCTATTCTTCTGCCGCCTC 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000068198 3 2 3 164 2 231063299 231074199 GATAAACAACAAAGCCAACGTG 59 231078942 231114673 TCTTGCTTTCGTGCTTTCAC 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000083162 1 1 3 92 10 38894546 38905203 AGGACAAGAAGAACAGATCAG 58 38905256 38905275 GTTCCACATTTGCTTTGGTC 58 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000082359 2 1 5 108 4 22375497 22375515 GATGACGACGTACCTCCAG 60 22375406 22375428 TGCAAGCCTCATTTATTATGGC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 2 2 5 85 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729170 19730710 TGGTTATGCAAATCGCTCC 59 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401 1 1 3 80 7 116158778 116198846 GTATCAAGAAATGTGTATCGCG 58 116158719 116158737 ACTCTGTGCTACCATCTCG 59 NA Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 3 2 2 80 3 148797644 148800671 AAATCAAGGCCATGGAGAG 58 148800715 148800733 CCAAGATCTTCTGCTGCTC 58 NA Rattus norvegicus 81 Ccdc89 ENSRNOG00000022766 ENSRNOT00000024095 2 1 1 60 1 154606757 154606775 CTAGAACTGCTCAACTCGG 58 154606798 154606817 CCTTCATCTTCTCCATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptrh2 ENSRNOG00000004288 ENSRNOT00000005661 1 1 1 128 10 74002174 74009361 AAGCTTCAGATGCTTTCCA 57 74009453 74009471 GAAGATTCCAAGGTGGCTC 58 NA InUTR Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000058524 3 1 4 86 3 57572037 57572058 GACTTGGAAGAATACAGCAGAG 59 57570344 57571992 ACAGCCAACCTCTAGTATTCG 60 NA Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 1 2 2 80 18 47842789 47850109 GGCCATCAAGAATGGTCAG 59 47850153 47850171 TTGGAACAACTCAGTTCCG 58 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 1 2 2 80 2 94720854 94720872 ATGTGTCACTGTCGATGGA 59 94709547 94720812 ATTTCTGACTCATTTCCCACC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 1 2 6 80 1 262013548 262013567 CGGATGAGGAATTTGAGGAG 58 262012002 262013505 TCAGACAAGCCACAATCTC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623 3 1 6 80 1 262013610 262013928 TTTGCCAAGATGAGGTGTG 58 262013548 262013567 CTCCTCAAATTCCTCATCCG 58 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 3 2 2 84 19 25953642 25955249 CTGATGAGACGGTGAAGGT 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063 2 1 2 83 17 45255678 45255697 AAAGTAGCCAGATGGAGTCC 59 45255741 45256028 CCTGGGTGACTCTAACTTCTG 60 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000088802 2 1 2 118 X 37336867 37337312 GTATCGTTGGACCTCACGT 60 37337393 37338283 TATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000087894 1 1 4 80 1 267607688 267607707 CTACAGCATGAGGTTCTGTC 58 267607750 267627772 TTGATGATTTCATGCCGGA 58 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 3 2 2 81 7 116421169 116422136 GTGTGCAGAAAGAGCTCAG 59 116421106 116421124 GGTAGCAGTTGATGAGCAG 58 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 1 2 2 80 19 674656 674676 TAGTCCTGTACCTAATGTTGC 57 674714 678094 CTTGATAGTTAGATACTCCTGGG 58 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 2 2 2 80 19 674658 674677 GTCCTGTACCTAATGTTGCG 59 674714 678096 AACTTGATAGTTAGATACTCCTGGG 60 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 2 1 2 81 8 55110323 55110341 GTGGATCTAGAACGGGAGC 60 55109474 55110281 AATTTGTCACCTCATCTGTGTC 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 2 2 2 80 15 52257010 52259310 CTTTCTCCAGATGGTGTGC 59 52259353 52259372 AACCCTGAATCCAAGTAGCA 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249,ENSRNOT00000087919 1 3 4 84 X 54259441 54262384 ATGGCCTAATGAAAGCTGG 58 54258975 54258993 ATTTGTCCCACCAAAGCAG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 3 2 4 83 X 54235604 54235623 AAATCCGTTACTCCACCTGG 60 54229835 54235560 ATGGGATACCACTTTCAGGAG 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521 2 1 2 80 6 137946272 137946290 CCTGTCATCAACAATGGCT 58 137946333 137946555 CTTCATGTTGCCATCTACCC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 3 3 3 81 1 32113642 32114892 GCACCTGTACAATGCTGAC 59 32112924 32112942 ATGTAGTATGAGCCTCCCG 58 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000091085 2 1 2 114 3 77709984 77791837 TTCTTCTTGGCATTCCTGTC 58 77709889 77709907 TCATACACCAGCCAAAGGA 59 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262 2 1 2 95 10 63326545 63332247 GCAGGAACAAGTTTGTGCT 59 63332305 63332324 TTCCAGTGGTCTTATGCTCG 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786 2 1 4 81 5 115167945 115167963 GCTCTTAGCTGGCTACCTC 60 115167880 115167901 GAACAAGTTCCCAAATGGCA 59 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073 3 1 2 81 16 19389609 19389705 TGACAAACTGAAAGAGGCTG 59 19389547 19389567 CAGGTCATCGATTGTCTTCTC 59 NA Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 2 2 2 80 17 10469490 10469588 GAGAACTATGAGGCTCTCCTG 60 10469628 10469648 CTCTATGTCTGCTTTGGTGAG 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 3 2 2 148 4 120412028 120412046 TTGAGGAGGTGAAGAGCAC 59 120412157 120415007 TATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307 3 1 2 89 6 6637352 6637372 TTCATTCCTTCGGATGTTGAC 59 6637418 6638645 CTTTCCTCGATAACCATATTCCAG 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 2 1 1 162 3 81509454 81509472 TTCTCTACCTGAAGGCCTG 58 81510787 81510805 GTACTGGATGGCAATGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 1 2 2 97 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112 3 1 2 108 2 189581753 189581771 TTCAAGTTGCTGCTGATCG 59 189581842 189583006 AATCAATTCCGATGGTGGAG 58 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 2 1 2 80 1 166344238 166351177 GAATGACGATAGCTGAGAGTC 58 166351217 166351237 TTCGAGCCTCCTTATTTAGAC 57 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 3 1 2 81 1 166344238 166351177 GAATGACGATAGCTGAGAGTC 58 166351217 166351238 TTTCGAGCCTCCTTATTTAGAC 58 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 1 2 2 66 16 19637556 19637576 CCAGAACATAGATGATGACCA 57 19636633 19636651 CAGTCTTTCCACAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000004350 3 1 2 152 13 99142407 99143763 AATCATGAGAAAGCGATGGC 59 99143878 99143896 CATTTCATGGCACTGCCTC 60 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263 3 1 2 81 13 99142351 99142369 AGACAACCAATCGAGAAGC 58 99142413 99142986 TGACCAGGAATTGCTTTCTC 58 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 2 2 2 84 16 19663400 19667056 AAGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 2 2 2 106 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199590 220199609 ATGACATCTGGCTTCACTCC 60 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 2 2 2 129 13 45316565 45318783 CCATGGAAATATACACTTCGGA 58 45316457 45316475 AAATAGATGGTGGGCAGGA 58 NA InUTR Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000080537 3 1 2 81 15 46008926 46008944 CAGGAGGTGGTCAATATGG 57 46008989 46059109 AAACACGAACTGTCCTGTC 58 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 3 2 2 80 5 76678301 76678319 CTGGCTCAAAGAACTTCCA 58 76675409 76678258 CCATTGTAACAGAAGGAGGA 57 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000021703 1 1 2 80 17 53563933 53563953 CTGCAAATGACACTTACACAG 58 53563994 53747698 CGCTGAATCTAAACCATTCG 57 NA Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 3 2 2 80 17 54375304 54380670 AGTACAAGCTGGTTTGGGA 59 54380714 54380732 TGATGCCATTTCAATCGCT 58 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 3 1 2 96 2 235321269 235322661 TTGGTGTTCATCTGAACATTGG 60 235322718 235322736 CAGTCGTTCTTGCCTTTCC 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299 3 1 2 105 20 19318344 19346719 ACCGTGATGGTAACAAATCAC 59 19346784 19346804 ATCTTGAAGGAGTCACATGTG 58 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 2 1 1 60 11 65960427 65960446 ATCTGCTTCAGTACAACGAC 58 65965161 65965179 CGAATCAAGGCAGGATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776 2 1 2 90 15 52295061 52295079 CTTCCTATGGCAGGACCAC 60 52294171 52294852 CATAGGGATAGATCTGGGCTC 59 NA Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 3 2 2 81 2 188452441 188452461 TCAAGGAGATGATCAAAGCAG 58 188452503 188452663 ATGGATTCTGCATGGTACTC 58 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 2 2 2 80 8 114333009 114333027 AACGTGCTCAAATGATGGT 58 114333069 114337505 AGAATAGACCTCGTCGTAGTG 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037 2 1 2 87 17 55290236 55292266 GCCTTCCAGAGTTAAAGTTAGAG 59 55290171 55290190 CTGAGTTAGGGACTCTGAGG 59 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 1 2 2 81 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935393 166935414 AAATGTCCTTATGTGCTTCCTG 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 1 3 4 87 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342958 76342976 ATCACATCGACACCAGTCC 60 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 3 2 2 115 7 104525176 104527566 AATTAATAACGTCCCGGCAG 59 104525080 104525098 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 3 2 2 80 1 402125 407511 GGAGAAACATTGGTTCCCTC 59 407553 407572 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000081715 2 1 2 81 20 8304487 8304505 GTAAGATGGTGGAACGCCT 60 8304548 8304732 AATTCCCTTCTTCCTCTTCGT 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458 1 1 2 80 X 104491615 104491634 TCACTATGATCTTCGTGGCA 59 104487781 104491572 AGTACTCAGCGATTCTGCA 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458 3 1 2 81 X 104491615 104491633 CACTATGATCTTCGTGGCA 57 104487779 104491570 GGAGTACTCAGCGATTCTG 58 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000004017 1 3 4 80 5 116702980 116703001 GAAGGAGTTTGTCCAACTTGTC 60 116703041 116705149 CTGCTTCCATTGGGATTGAG 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000034495 2 1 2 80 5 17650896 17663137 AACGTGCAGATAAATACTGAGG 59 17650837 17650856 GTCCTCAGGAATCTTACGGT 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787 1 1 2 80 4 118223860 118224047 AAAGATACAAGCAGTAGTACCG 58 118224630 118224651 CAGTTTATGAGAATCCATGTGC 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 3 1 2 80 4 118230303 118230437 GACTGACAGAACAACTAATGC 57 118230477 118230497 ACCCTTTATCTGGAAAGACTC 57 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 2 4 7 81 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971 2 1 5 80 5 101697776 101697794 AAAGAGGTTGAGAGTGCGT 59 101697836 101738243 GGTGCTTCTTAGCAAGTTCAG 60 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560 2 1 2 133 5 88601663 88612315 ATCTTGCTACCGAAATCGC 58 88600079 88600097 ATTCAACTCTGCCATGGTC 58 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 2 2 2 80 7 30293413 30294239 TCAAACAGACTAAGGACTTGAC 58 30293354 30293372 TCTTAGGAGTGCTAACGGA 57 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000085022 2 1 2 102 8 49258271 49264831 ACAGCAGTCTGGTAGTGTG 59 49258187 49258207 ATTATCTGAGTCATCTGGGCT 59 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 3 1 1 64 9 65789123 65789141 CTTCACTGGACTGCAAGGA 60 65784799 65784817 GGTGCGTGTAAATCATCGA 58 NA DesignNoJunction Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 3 2 2 92 9 100923719 100923738 CTATGAGACTGGGACGTTCC 60 100922032 100923664 GAAGCATCAACCACCTTCC 59 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 3 2 2 94 1 101379422 101379564 GGCTAGAGTGAACTATGACAC 58 101375213 101375233 GTTTACTGTAGACCATGTGGA 58 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 1 2 7 80 17 57067671 57079369 TTGTTCAAGATGAGGAGACTG 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000084632 3 1 5 118 X 63803924 63803942 GATGAAGCCTTGGATGCTC 59 63803818 63803842 AACTCAATGTCATCCCAAGG 58 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 3 2 4 82 7 143124231 143124984 GCTCTGAAGAAGGATGTGG 58 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 1 1 1 66 16 2048045 2048063 TTAACAGCGTCTTCCAGCT 59 2036440 2036459 GGTGAAGCGTTCCTATACAC 59 NA DesignNoJunction Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555 2 1 2 83 1 88698768 88699774 CTAAGTGAGTCAGGGAGCC 59 88698703 88698721 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 1 2 3 92 11 71128128 71128146 TCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 2 2 3 93 11 71120949 71128132 GTGACAAGGTTCAGACCCA 60 71117915 71117936 CGAGTTAATCGTGGTTTCTGAG 60 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 3 2 2 80 2 149547638 149547657 TCTTTCTTCCTTGTGAGGCT 59 149545978 149547599 GGGATATTTCAAGTCCTGATGAG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 3 1 3 84 7 141067353 141067371 TGCATTGACCTCTTCTTGG 58 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892 3 1 3 80 18 57654318 57727192 ACTTGATGCTAATGTGAGTTCC 59 57727231 57727251 ATAACCATTGCGAAGAACGTG 60 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 3 2 3 80 3 150050879 150050898 ATCAGCTACAAGCCCTACAG 59 150050552 150050836 TTTCTTCATCCAACCGCTG 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 2 3 3 80 20 20583971 20583992 CCATGGATCTCAAGAAGTACCT 59 20584029 20586518 GGTACAAGTAACTCTTAACGAGC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 3 1 6 95 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972820 36976230 GCTGGGCTAAATGCATCTC 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 2 3 3 86 4 125704030 125704048 ACTGCTGACTAATGCGGAG 60 125694034 125703980 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 2 2 2 80 1 259065527 259065545 GCATTCTTCACCTCCTGAC 58 259063837 259065484 CTTCTCTGGTGTTTACCAGC 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000081971 2 1 3 80 5 117746932 117746953 TCCAGATGACATTGAAGTTGTG 59 117746628 117746893 TCCATTTCACTTTCTTCAGGC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491 3 1 2 80 20 19364564 19366030 TTATCCCAACGATTCAGGAG 57 19364503 19364521 CTGGGTCTGGTAAAGAAGG 57 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000065051 1 1 2 80 1 72656428 72656447 GTTGTTTACCTGTCGTGGAC 59 72656488 72657601 GTCATCTGTCCATGAGATGGT 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 3 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527374 TCAGAAACATAGATGCCATCCA 60 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 1 2 2 80 3 148672476 148672497 ATCCTCAGCATGATTATCATCC 58 148672535 148674752 CATAGTGTCTTCAATGTCATCC 57 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000068476 1 1 3 80 1 46929504 46930366 GAGGAGAACAGGAAAGATCG 58 46930408 46930427 ACAAACTCATGTCTTTGCAG 57 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089805 2 2 4 89 2 78249580 78251288 CTACCTACTGTTACTGTTTGCT 58 78251337 78251356 AGAATGGACTTGACTTTGCT 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837 2 1 2 80 13 98274776 98274796 AGCAAATGCGCTTACATAGAG 59 98274837 98311838 TAACTACAGCAACCTCACCA 59 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 3 2 2 89 10 105235580 105235598 TGCAAGGCTGTTCATTTCC 59 105235651 105236676 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000088297 2 1 2 81 19 44139466 44139805 GGAAGTCATTTCTTATCAGCCA 59 44139406 44139424 GAAGATGAGCAGGATGCTG 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 1 2 2 80 17 54022254 54022273 CCAAAGGAGACAAAGCAGAG 59 54022315 54023733 CTGGAAGAATCTGACACCTG 58 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 3 1 1 60 14 78973861 78973880 TAGAGAAGAGCGAGTCTTCG 59 78974151 78974170 ACTCAACCAGAATCCATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 2 2 2 80 12 1693578 1695548 TCTATTCTTGAGGAAGAGGCAG 59 1693519 1693537 CTGGCACTGAGGTACTCTG 60 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466 2 1 2 80 7 143182494 143182512 TGTCACCTACAGGAAGCTG 59 143180874 143182031 CTGCTCACAGATATGTTTACTGG 59 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512 2 2 3 81 8 71048928 71050412 GTGGACTCGTTTGGAATGAC 59 71048866 71048884 CAGCATTGACCAGGATCTG 58 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 1 2 2 80 14 11201127 11201145 ATACACAGACGAAGAGCCA 58 11201186 11201312 ACTTTGATTTCACACTTCCCAG 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 1 2 2 80 4 181084177 181084195 AATTGGGAATGGTGGTGTG 58 181084239 181086349 GGTCTTTCCCTTATGTGCC 58 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000091144 1 1 2 80 5 99177125 99177144 TAACCTGGACACTTTGAAGG 58 99177189 99177728 CTGAGTTTGCACCTACTGG 58 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 2 2 2 91 3 111023759 111036880 CAGGAACTCTTCCAGGGTC 59 111023686 111023704 TGAGTCCTTTGCTCGTCTG 60 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 81 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389 1 1 2 80 5 102432562 102432580 GAAATGCATGTCTGCACAG 58 102417196 102432518 TATGTTGGCACTGTGTCTG 58 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135 3 1 3 80 2 177950395 177950415 ACAATTATCGACACAGTGGAC 59 177947851 177950355 AGATTTAGTGCATTCCGTGTG 59 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693 1 1 2 80 18 58400208 58400228 TGAAGAGGAGGAAGAAGAGGA 60 58395164 58400166 GCTTGGTAGACGAACTGGA 59 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 3 2 2 81 3 93642685 93642706 CAATAAGTCAGAGCAAGATGGG 59 93642745 93645856 CATCAGCATCTGAAAGATGTGG 60 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 1 1 1 60 12 13734616 13734635 TACTGCAGAAGGACTACCAG 59 13736180 13736198 CCAATCTCCTTCACCAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 3 1 1 60 12 13734615 13734635 CTACTGCAGAAGGACTACCAG 60 13736179 13736197 CAATCTCCTTCACCAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000060810 3 1 2 142 6 28144216 28168874 ATGAAGCTGCTAAAGGCTC 58 28168980 28168998 ACTCCACTCAGTGAATCCT 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000043602,ENSRNOT00000041872 1 2 4 85 6 99180255 99180273 AATGGTGGGACTGATGTGG 60 99179347 99180206 CTTCTGAGGACCTGTCCAG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000042743 1 1 7 80 15 5467009 5467028 AGCTAGTTCAGAAGGAGAGG 58 5466200 5466968 GAATAAACCAAGACAGAAGGC 57 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 1 4 7 80 15 5415189 5508850 TTTGAACTACAGGCTGAGTG 58 5415128 5415149 GTCATCTTATGCATATCCATCG 57 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 3 7 7 86 15 5464664 5508849 TTGAACTACAGGCTGAGTG 57 5464596 5464615 CCAGTTGGTCATCTTATGCA 58 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000080824 2 1 2 80 7 31822356 31823608 CGTGGAAGAGCAGTATAGCT 59 31822295 31822315 CCACAGCTAATAATTCCTCCG 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000077726 3 1 2 87 18 58330804 58331390 ATGCTGCCAAAGCTTATGAG 59 58333460 58333478 CTGGCTTTCTCGATCAGCT 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477 1 1 2 80 2 116053577 116053596 TGCTGTACAGTCTGACATCC 60 116053638 116059662 AAATTCTGAACCTGAGCAGC 59 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 2 2 2 80 17 54035548 54036080 TATCTACACTGTTCAGGAAGGC 60 54035489 54035510 TCCCGTATGTGATCTACAAGTC 60 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 3 3 4 81 7 140417356 140417374 AGGAAAGACCACCATCCTC 59 140416247 140417312 TGTCTCCACATTAAACCCGA 59 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000082652 1 1 2 87 X 112281116 112281134 TACCACCACTGTGACATCC 59 112281181 112290819 GTAGTAGATGGATATTGGCTCCA 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402 2 2 4 97 3 3168421 3178672 CAGTATCTGACAGAAACCACAC 59 3178729 3178748 CATCTGGACCTCTAAGTCCC 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000012622 2 1 3 106 4 99808013 99808033 CAGCCTTACAGATACTACGTG 58 99804388 99807263 TATAGAGCTACCTGCTCGTG 59 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 1 2 2 80 17 66245102 66245121 TCTGTGAAGACCTCATCTGG 59 66243005 66245059 CTCCTTTGCCATGAGTCTG 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 3 2 2 80 17 66243017 66245072 CTTACGATATGCCCAGACTC 58 66242956 66242974 TCTTCAATCGAGCCATTCC 58 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522 2 1 2 98 5 39618414 39618433 TTTCAGTTCTCAACCCACAG 58 39617045 39618353 GAGGCCTTCTATCTCTGGG 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643 3 1 2 81 17 53666210 53673637 CACGATCTGGAGATGAAACC 59 53666148 53666168 TCTTCCTCATCTTCTTCCTCC 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000080605 1 1 2 193 1 197909346 197909364 CAAACTGGAGTCACAGCAG 59 197908968 197909189 CCCACCCTACATACTTGGG 59 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000079779 3 1 2 83 5 144106929 144106947 GACTCTTCTTCCCAAACCC 58 144107979 144107997 TTCGCTCCTTCACAGAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000018936 3 1 2 81 17 27452109 27452128 CTGCAGTCTGGATAGGATGG 60 27449385 27452069 CACTTCTTTGTCTTCACTGTCTG 60 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 1 2 2 80 11 14254241 14265430 CTGGATGAAGAAACTGCCG 59 14254179 14254201 CTGTGATTCACTCAAGATGTCTG 60 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000019511 2 1 2 81 16 2958428 2958446 TACCTCACTGTCAAGAGGG 58 2958490 2984461 TGTTACTAGGTTCCTCGTCC 59 NA Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 3 2 2 80 7 35091077 35094603 CTAATGACACCAGATAAGGCTG 59 35094642 35094662 GAGATTCGCTAATGACGTGAC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000067610 1 1 6 90 5 48012082 48012235 GCAAGAAGAGGATGGAGGA 59 48012287 48012307 CCAGAAGTCGTCCTCTAAGAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 3 5 8 84 20 1963410 1966090 ACAAGTGGATTGGAGGGTC 59 1963344 1963367 GAGATAAAGAGTTTCTGAGACAGG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 2 2 2 81 9 10742951 10742969 GGATGACACTGAACCTGAG 58 10741400 10742908 TTCAGGATACTGCATAGTGAG 57 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 2 2 3 85 1 88586426 88587090 TCATCTCGGTGGGATTTCAC 60 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 1 2 2 80 14 45849657 45849675 GTAAGCTTTCTAGCCACCA 57 45848298 45849616 GGTAATATGATAGCCGTACTCC 58 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 2 2 2 80 14 45848168 45848188 AAATCTCTGCTGTCAGAGACC 60 45844260 45848129 TCTTACTGGTAGGAAGAACAGC 60 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041 2 1 2 80 1 266027631 266027650 CTGGACACAGTGATGAAGAG 58 266027693 266029850 GCATCAGGTCTAGCAACTG 58 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 1 1 1 115 9 82054305 82054323 TGTTCTTCCTACTGCTGCT 59 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 3 1 1 100 3 8657495 8657513 CTCAGGCTATCCCACTTCG 60 8657234 8657252 ATCATAGCGACGAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 2 2 5 80 13 78782830 78782850 CAATTACGGCTAGAATTGCAG 58 78782890 78784483 GTTACTAACAGCCTCTAGTCC 57 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 2 2 2 80 7 143402864 143404911 TACCAGACCAAGTTCCAAGAG 60 143402804 143402822 AGAGATCTCGTTCCTGGTG 59 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390 3 1 2 80 1 214485922 214485941 TGGGATTGAACTTCTATGGC 58 214477324 214485879 TCTGTATGTACCTGGCTCC 58 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 2 1 1 60 2 156807073 156807091 AGTTCAGCAACCTCTACGT 59 156792534 156792552 TGGAGATGATCCCATTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095 2 1 2 80 6 108021914 108026763 CGGTGATAAGTCAGATCAAGGA 60 108029789 108029809 CTCCTGTCATCATGGATTGGA 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260 1 1 4 142 1 189328417 189359838 ATTCTCTGCTCAACATTCCC 58 189359942 189364282 GGTAGTCCACTGATACTGTG 57 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 3 2 3 142 15 11874676 11878822 ATACTGACTTCACTCCAGGG 59 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 1 2 2 80 1 141565983 141566142 TGATAATAACCCGATCCACCC 60 141565923 141565941 TTCCACTCTTCCTCACCAC 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 2 2 2 80 1 141566233 141566832 TGATGGAGCAGTACAACGA 59 141566171 141566190 CAACAACGAGATCCCTACAC 58 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 3 2 2 81 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000092002 1 1 2 80 15 4883229 4883968 GCAGCAGGATGAAACAGAG 59 4884007 4884030 CTGTCTTCAATCTTGTAGTGTCTG 60 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000012640 1 1 2 120 7 143222710 143222728 CTACAGGAAGCTGCTGGAG 60 143219707 143220769 AGAAGTGACCACAGCTGAC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094 3 1 2 80 9 65939826 65939846 TGAAGATTGACGAGAAGTGTG 58 65931120 65934323 CAAATTCCTCTTTAGCTTCTGC 58 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000067393 1 1 2 96 14 115443076 115443096 ATTGGAAGAGACCTCCAGC 59 115445936 115445955 GTTAGACTTGGAACAGAGGC 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000071939 3 1 2 80 20 9327894 9327962 CTATCAGGAGGGATCAGTTAAGAG 60 9328450 9328472 CCACTACCTGATGGGATATACTG 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492 3 1 2 83 1 193132483 193132503 ATAATGCACTACCTAACCAGG 57 193132546 193132724 GATTGCCATTCTGTCTAACAG 57 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004 1 1 5 98 X 71299989 71300008 TTATGAGGAACTTGGTCGTC 57 71299893 71299928 CATTGGTTCCAGGACAGAC 58 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 2 2 2 110 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126479 GAGCCTTATATCATTTGCCCTG 59 NA InUTR Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 2 1 1 97 1 7305885 7305903 ACAGCAACAACAGCAACAG 60 7313099 7313117 TCCTCTTCCTCTTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 1 1 1 60 1 220417130 220417149 CGGCAGTATGGTTTCAATCG 60 220417414 220417433 AATTAAACCCTGCCATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 1 1 1 157 10 13541901 13541920 GCTGACATCAAGAACAACCC 60 13537962 13537980 TTCATGATCAGCTCTGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 81 11 81635521 81635539 CGACAAGTACAAAGCGGAG 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 2 2 2 124 14 86479834 86613015 TAAGCCTGTCTGGTATGCT 58 86613103 86613121 ATTTCTTGAAGGCGTCCAG 58 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412 3 1 2 81 10 46155486 46155504 CTCTGACCAACCAGAACCT 59 46154186 46155443 TTCACTTTGTTCATCCACTCC 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531 1 1 3 80 5 173264690 173264708 GATGTCTTTGTGCGGTTCC 60 173264751 173265127 TAAAGGGATCTCCAGTGTCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 2 1 2 125 1 29432191 29432210 CTTGAATCGCTATCTGCTGC 60 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000085929 2 1 2 80 5 163214865 163214888 TGACTACTACAAACGAAGACAG 58 163212954 163212972 CAGAACATGGAGCCTTCTC 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000084906 1 1 2 84 12 2145515 2145533 AGAACAAGAAGCAACCCAG 58 2145581 2148311 CTTGCGGTATCGAATCGAG 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270 3 1 2 106 7 97900334 97937639 AAGAAGCTATGGCAGTGGT 59 97900246 97900265 TATTCCTGTCGTCTGTACGC 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 1 1 3 91 10 12048740 12048761 CAAGGACTACAGCAATGTCC 59 12048815 12048833 TTTCAAGACTCCTGGGTCG 59 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245 1 1 2 80 5 137670292 137670387 CTCAGATCAAGAGTTGCAGGA 60 137670428 137670447 TTCTTCGGCTTCTCTAGCAC 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 2 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133602 100134529 TGGTAATTGTTGCTAGAGCA 57 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423 3 1 2 80 2 173472329 173472349 GATGTCTTGAAGGATCAGCAG 59 173463490 173472288 TCTCTGTGATTTCTGGCCTG 60 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 2 2 2 80 13 107692270 107733316 AAGACGAAGGAAGAGGTGG 59 107692208 107692226 TGTTTCCTTGAACTCGGCT 60 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 3 2 2 80 19 38601994 38602014 ATCTTCAAACTGGAGCAAGGA 60 38602056 38607144 GGTCTTCCAGTCTGGACAG 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000028651 2 2 3 86 1 221893512 221893530 CACAGATGACCTTCTGGTG 58 221893579 221906120 AACTCTCCTCCAGTACTAGG 57 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000020427 1 1 3 84 16 3674867 3674886 ATGCAACAAACTAGAAGCAC 57 3679148 3679174 GGGAATGTTATGACTTACTGGA 58 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 1 2 2 119 5 160575351 160575369 CTATCCATCTGCCTGAGCA 59 160571605 160575268 CTCTTCCTGGCTGTCTTCC 60 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288 3 1 2 89 20 27954722 27979742 GAAGAGCTGAGCAACATGG 59 27979794 27979813 GTTCACGATCTTCTCAGCAG 59 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 3 2 2 80 11 72164734 72167900 TGAGCATTTCACAGCTATTGTC 59 72164675 72164696 GACTGCTCTTCTATGATCTGCT 60 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303 3 1 2 80 2 195677634 195678263 AAGAACTCTATTCAGCTGGG 57 195677573 195677592 GGAAGTCTAACTGAACTGGG 58 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 2 3 3 80 18 56899339 56899359 CGAAGACCTCTTCAATTTCTG 57 56899398 56900108 ATTCTACTGATCATCTGGTCAG 57 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 1 3 3 80 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900106 TCTACTGATCATCTGGTCAGC 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000084075 2 1 3 83 7 141347003 141348665 TCTCAGTGGTCTTCACTCG 59 141348712 141348730 CTTTCATGGTCTTCAGCCG 59 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309 3 1 2 83 10 4553630 4553648 TCACTGAAAGCAGTTCCTG 58 4555663 4556067 TCCATTTGCAAACACTGGT 58 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000003801 3 1 2 85 10 43885483 43892083 CTTCTCTACAGACTTCTGGGA 58 43885418 43885436 GACACTTGAGACCACTGGA 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000041988 3 1 2 84 4 82816412 82816432 TGAGCTAGAGGACAGTTACAG 59 82816475 82820399 TGTAAGTTCACTGTAACTGTCC 58 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000089292 2 1 2 83 4 31534227 31534245 GCTCAGCTTTGTGGATACG 59 31534289 31537261 GATCCCATTTGTAAAGATTGGC 58 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000077544 3 1 2 80 1 246010579 246031850 CCAAAGTGAGACCATCATGC 59 246010518 246010539 CTAGCCACAGATGTTTGTAGAG 59 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181 3 1 2 83 3 112713639 112716596 GGAACAGGGAGCAAGTAGG 60 112713574 112713592 AGGTGCTGAATTCTGGAGG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802 3 1 4 181 17 72209468 72218772 GGATCCAAGTTCGAAACATGG 60 72219622 72225934 CTTCTCATACAGAGCCAAGGA 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 2 2 2 80 2 232151663 232151682 CCAGAAGACGACTTTGAAGC 59 232151415 232151625 ATCAGATGAGAGTCTACTACTTCG 59 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 1 2 2 80 6 76063468 76063487 CACCATGACCAATGTCTTCC 59 76059981 76063429 AGGTAGGTCTTATAGTCCATCTC 58 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 2 2 2 80 7 143163543 143163562 TCAAGGCTCAGTATGATGAC 57 143163284 143163500 TCATCTCCTCACACTTGGT 58 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000074811 3 1 2 101 X 85462659 85462802 TTGACCAACATTCAGGGTC 58 85462864 85462885 GTAGAGCTCTATTCGTAGTTCC 58 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741 3 2 3 80 7 81976519 81976539 AATACCATGTCCAACCATTGC 59 81925878 81976478 TTTGGTGTTCTCTTCCCTCC 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 3 2 3 92 10 13306215 13306344 GAGCCCAGAATATTCTGGG 57 13306400 13306418 TTAAGAATATCCGCAGGCC 57 NA Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 3 2 2 80 Y 152647 153828 GGCTAAAGCTATGATGAACCA 58 153866 153888 CTCAACATGTAGCTCAGTAAGTC 59 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 2 2 2 86 6 99388226 99388244 CGTTTACTTCAAAGCCCAC 57 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 1 2 2 82 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019870 77019889 GCTGAGTTTCTGTTGACTCC 59 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 2 2 4 61 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231069 50232915 GCCATCACAGGTTTGTTAGG 59 NA DesignRelaxed Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000079304,ENSRNOT00000046771 1 2 3 89 14 17555403 17555421 ATATCCCAAAGTCGACGTG 57 17555472 17555618 CTAGAATTTCGAGCTATGCCT 58 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 1 2 2 80 8 52813071 52813095 GAGAAGGATCAGATTATTGAGATGG 59 52808684 52813034 AATCAGGTTGGGACCTTCAG 60 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777 1 1 2 123 11 83925085 83925627 TCTCTGCAGCACTTCTACC 59 83924980 83924998 TTACTTGGGATCCAGCAGG 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 3 4 4 81 5 152682825 152682843 GCCAGTGGATTGTGTAGAG 58 152682885 152683368 AGCTCTTTCACCTGAATATCAG 58 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454 2 1 2 81 1 219862124 219862144 TTCACCACATTATTGAGCAGC 59 219861799 219862081 TAGGAGAACTGGAACGCTG 59 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000085310 1 1 3 80 10 5240097 5253200 TACCTGCAAGGCCATACTC 59 5240035 5240054 ATCACTGTTAAGGAGCTCCA 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361 2 1 2 103 2 179589764 179591409 AAAGGATCCTCATTAAGAACCC 58 179589682 179589701 TCACCTTTATCGTACCACCA 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000080083 2 1 2 80 10 46993386 46993462 GCTCTATACACAAGGATTAGTAGC 59 46992938 46992959 GTGCTGGGAATTGAATTTAGGT 59 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554 2 1 2 94 3 94358121 94358139 CCATAAGGGTGGACAACAC 58 94357827 94358063 CCATGTCTGCTGTGAAAGG 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 2 2 2 119 1 266401976 266409952 ATGAACTCTGGTGGTTCTGG 60 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 3 2 2 80 1 220471088 220471245 CATAGTGCACAAAGAGCTACAC 60 220471286 220471304 GCTACATAGGCTGTGTCCA 59 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725 3 1 3 80 7 27250456 27250482 GAGCTGTATCCAATGATCATGG 59 27262804 27262824 GTTCTCCACAAACTCTTCGTG 60 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 3 2 2 79 4 82159737 82159756 GGATGAAGAAGATCCACGTG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 3 1 1 62 4 180291582 180291600 TCAGAGACACTCCGTTCTG 59 180315486 180315504 TGAACAGTCCAAGGTAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879 2 1 2 120 1 222844720 222862239 CATACCAGAACCCAAGCCT 59 222862323 222869435 TCCTGGGATTTCACTTGGG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 2 3 8 80 4 8194327 8194475 AATCAAGAGGGATATGACCGAC 60 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 3 2 2 130 1 165886104 165886123 GAGAGCGATCTTCCTGAGTC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000091978 2 1 2 82 10 85994739 85994757 TAAGACATGCAAGGTCAGC 58 85994526 85994693 AAGATGTGGATGTCTTGCC 58 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 3 2 2 83 1 87167611 87167852 GCTTGTCACAGCATACCTC 59 87167546 87167564 CCATGGAGGTCAGAAACAC 58 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 2 3 3 101 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613721 80614138 CATCAGTACCGTCAGTTCCT 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000088292 3 1 2 83 1 5248351 5250567 TGCTGGTGATAACTCCCTG 59 5250609 5250632 CCTGTGTACGGATTATAGTAGAGG 60 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000082027 3 1 2 142 6 111180311 111180589 GCAAGCCTGTTCTCTATTCC 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370 3 1 2 142 1 163114614 163114633 AATTACTCAGCTCTGAAGCG 58 163103732 163114509 TCGCAGATATCCTTAGGCC 59 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031622 1 1 2 87 3 3837890 3837908 TGTCAAATGTCAGCCTTGG 58 3837960 3838057 AATCCTCCTCAGGAAGGAG 58 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 2 2 3 60 9 50968846 50968866 CCCTGTATCCAGTACTAAAGC 58 50970312 50970331 AAGGAATCAATCCGTAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 3 2 3 60 9 50968846 50968867 CCCTGTATCCAGTACTAAAGCA 59 50970312 50970331 AAGGAATCAATCCGTAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000059349 1 1 3 84 9 50960156 50960174 GCTTATCTACTGGGCAGTG 58 50960221 50960244 ACCAGGAATTTGGAGAATCTC 58 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000059349 2 1 3 87 9 50955869 50960135 CAACCAATTGGGACTGGAC 59 50960185 50960204 AACAGTTGGAATCCCTTCAG 58 NA Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 2 2 2 84 7 11239681 11239700 CTTTGTAGTGGCTGTCAAGC 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000087857 3 1 3 132 19 52671144 52671162 AAACTGGATTGGTGAGGCT 59 52675786 52675807 TCTCATCCACTCTGGTTTCTG 60 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 2 2 2 80 16 6877765 6877784 TGAAGAAGTGAGCATAGCCA 59 6877825 6878778 ACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642 3 1 10 95 7 117253868 117289764 CATTGCAGATGAACGAGACC 59 117253483 117253501 TACAGGTCACTGATGTGCC 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 1 2 4 80 7 142036960 142036978 TTGCCCTCATCCCTATCCT 60 142035033 142036916 CGATCCTCCAGCCTATTCC 59 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 2 2 2 82 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220009 106220027 CCACCAGTTTGTTCAACAC 57 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005 3 1 2 80 13 101039211 101039763 GAAAGCAGGTTTCACCCTC 59 101039805 101039825 AAGTCAACACCAAGCTTACTG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000031988 3 1 5 145 8 73164586 73164613 GTCAACTATGTAGAGTCAGTTTCC 59 73161438 73161456 AACATTGAAAGTCTCGGGC 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000064613 3 1 5 80 8 73065640 73073875 CACAGCTCAGGAAATGATTGG 60 73065580 73065600 TTCTGCACCAGGAAGATACAG 60 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000087458 1 1 3 96 9 65706111 65706129 CTTCAACTGGAGCAGAAGC 59 65702282 65706051 AAACCAGAGCTGAGACTGG 59 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000081669 2 1 2 82 1 164129062 164141362 GAAGCTCTGTAATGGGCAC 59 164128998 164129016 CTTGGATCTGTTGAGCCAG 58 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000086571 2 1 2 83 14 21041841 21042205 TTCAGTGAAACGGAGTCCA 59 21042252 21042270 TCCTAACTTGGATGGGCTC 59 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 2 2 2 81 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277526 171278573 CTTCAGAACTTGCACCTGTG 60 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000087920 3 1 2 92 1 102874792 102874813 AAGAGTAATTTGGAACGGTTCC 59 102874866 102876983 GTGAGTCACCAGGTTTGTG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 1 3 3 80 12 11544132 11544151 CCATCTCCCGCTACTATGAC 60 11540848 11544089 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000040559 2 1 3 89 1 3879193 3890876 CGACTTCCGCAAAGATGTC 59 3872201 3872222 GAGATCTGCTGAAGGAATTGTC 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699 1 1 3 81 1 3879189 3886251 TGATCTAGCAAAGATGTCAAGG 58 3872208 3872228 GCTGAAGGAATTGTCTTTCAC 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 1 1 2 79 15 28023026 28023044 CTAGACTGGTCCCAGTCAG 59 28034121 28034139 TGGGTCCTCTGTATGTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 1 2 2 80 2 198704291 198704311 CACCATTATCCTTCCCAAGAG 58 198704125 198704254 TTCTCTAGAGTCTCTAGTTTCTGG 59 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537 1 1 2 85 16 21347236 21347256 AGACAGTTGTCATCATTCTGG 58 21345288 21345306 TTTACAGTCCAGACCGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000039273 1 1 2 82 19 55210274 55221874 CATGAAAGGAAACTGCACG 58 55221920 55221938 TGATGAGGGAGTAGTTCCC 58 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000089897 3 1 3 80 4 38338325 38338345 AGGCTGAAGACTTAAGAACTG 58 38338386 38378653 CAGACAATCTCATCCTGACG 58 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000078658 3 1 6 151 20 3301107 3305334 CTGGTGATCCCAAGTCAGG 60 3305449 3306026 GCGGTCAGATTTGTCTTCC 59 NA InUTR Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000007287 3 1 2 82 6 49844352 49844457 AACGTTTCAGATAACTGGAGG 58 49844290 49844308 TTCTGCCCTCGATAGTCAG 59 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721 3 1 2 101 19 43163608 43163626 TTGGTCTCTTGCTTCTGCT 59 43163688 43164044 AGATGATATCTTGCACAATGGG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000089099 3 2 7 96 5 166072413 166075276 GGAAGTGGAGGCAAATATCTG 59 166072337 166072355 ATGCTGTGGAGAAATTGCC 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 2 2 2 80 18 76707445 76707465 AAACCCTGAGAAATGTTCCAC 59 76705400 76707405 CCAGTAACCGATCTACCTCAG 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 2 2 2 81 3 5121017 5121038 GATGTCCAGAAAGTTGTAAGTG 57 5122313 5123381 CAAGAACATCATTCCTAATGGG 57 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 2 2 2 81 16 20694964 20694982 CTCCGTCCTGATCATCCTG 59 20695025 20695163 AGTTAGAGGCTGGAACTTGAG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008857 2 1 3 81 3 117430241 117430259 GGTGCATGCTGAACATCTG 60 117430304 117435554 ACTCCAAGACCAATTCCCG 60 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 2 1 2 80 7 49063873 49074131 GAAATATCGTGGTAAAGTTGCC 58 49063814 49063833 ATAAATGCTTGAACGCTTCC 57 NA Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 1 1 1 84 1 221596909 221596927 AGTGCTGTACCATCAGCAG 60 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 3 1 1 88 1 221596905 221596924 TCTCAGTGCTGTACCATCAG 59 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374 2 1 2 84 4 99414430 99414453 GTGCCAATAAATGTGTCACCA 60 99414499 99414517 TCCGGCTCCATATCTTCCT 60 NA Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 1 2 2 103 10 47767081 47767099 GTTGACTTCTCCATCTCCC 57 47767166 47767553 TAGGACAGTGAGTCACCTG 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000036483 2 2 4 121 13 79740183 79744863 TTTACTGGCAAAGAAGACCC 58 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 1 2 4 119 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738394 79738414 ATCTGCAGGCTTTATTGTCTC 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 1 2 2 80 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736482 15736500 GACAGAGTCCTTCGGACAC 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 1 3 5 80 18 79424925 79426825 TCTTCAAGAACATTGTGACACC 59 79427267 79427286 AGCTAAATCTGCTGAGGGAC 60 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000081125 2 1 2 80 7 2984830 2984850 CAGGGAAGATCTTCAAGAAGG 58 2984511 2984562 AGTCCTGGTCATTTACGGA 58 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578 2 1 2 80 7 2980224 2980242 AACCAGTGGTCCCTTTGAG 60 2980045 2980181 CTCTGGAGAAGAGCCTTCAG 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 1 2 2 106 2 54819098 54823566 TAAAGCAGGAAGTTCCACG 58 54819010 54819028 GAGCTCTGCTATTTCTGGG 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700 2 1 2 82 3 119024872 119024891 GAAGTCACGTTCACCACAC 59 119028046 119028065 TGGTGATTAATGGTTGCAGC 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000091693 3 1 2 80 6 124596591 124596611 TATGAGCTACTAACTGGAGCA 58 124583673 124596555 TAAGATTCTCCTAGATATCTCAGCC 59 NA Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 2 1 1 85 1 53562976 53562994 CTTTGGGTGATGTGACTGC 59 53562753 53562771 ATCCTCCATCCTCAAACGC 60 NA DesignNoJunction Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000082482 1 1 4 88 1 226791118 226791730 GAACACTGGGTGACTTGTG 59 226779523 226779541 CTGACACTTGGAGTTGGAG 58 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 2 1 1 60 4 49372182 49372203 CCATGAATCTACACAACAACGA 59 49378959 49378978 TCCACAGACATTAACTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120 1 1 2 80 1 91004421 91004441 AATATGAAGCACATCGTGTCC 59 91004481 91005274 CACCACAATGTCTTTCTTCCA 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 1 3 4 82 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231 2 1 2 81 19 55939426 55939447 TGTGAATGCCAAGTACAAACAG 60 55939489 55940696 GATGGCTACCTTCAGGTCC 60 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 1 2 2 80 X 110846463 110862325 AAAGTAGGAAGCAGAGGCA 59 110862369 110862387 CTCCTTGTTTCAAGGTGCG 60 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682 1 1 2 80 10 48465463 48470643 AAGCTCAGTGTTGAAAGAAGAG 59 48470684 48470702 TTTCAGGAGTGCATTACGC 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000037168 1 1 2 80 3 113933536 113933987 ACCACCCATAATAGCACCAG 60 113934029 113934048 TCCCAGTCTTCCTCATAGGT 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790 1 1 2 80 1 57370770 57370788 AGAGAAGAGCTGCAATCCG 60 57370830 57382149 GTAATCCAGCTGGACAAACAG 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705 3 1 2 81 15 107972668 107972686 AGTGACAGAGGTCATGCAC 60 107971210 107972623 TTCGAAGAATCCCTGTCCG 60 NA Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 3 2 2 80 18 69742171 69742993 TTAGAAGCTGCAAAGGCAC 59 69742109 69742130 ATTAGCAAGTGATGGGTAAAGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 1 2 2 80 10 86880072 86880232 TACACTACGAACAACAGCTC 58 86880275 86880293 CTTGGTGGAGAGTTCACTG 58 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 3 2 2 84 17 87933920 87956852 CTGGCTGGAAAGAATGTTCTC 59 87932529 87932548 ATTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612 2 1 2 80 1 248308192 248308213 CAGAAATCGCCATTCTAAATGC 59 248301705 248308151 CCACGTACCCTCTGAAGAG 59 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354 3 1 3 60 9 81562813 81562833 TCCTTTGTCCTCTGGTTATCC 59 81562773 81562792 CATACCCTACCACAGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 2 1 1 122 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162423283 162423301 GGATGTTTCATCAGGGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000020556 2 1 3 80 3 154905166 154905189 GTCACTACATTTGGTGATTCAG 58 154905230 154905248 TCTCGTCCAACACTTTCTG 57 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 1 2 2 80 4 100299539 100299557 ACAGTCACCAGATATCGCC 59 100299402 100299497 AACATCAAACCCTGATCTCCT 59 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 1 2 2 80 5 21344901 21345643 GTTACGAGGAAGGTGTTGAG 58 21344840 21344859 TGGAGTTCAGGTTGATAGGT 58 NA Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 3 2 2 85 7 142759248 142759266 CTTAGACCTCCAGGGAAGC 59 142759315 142759338 CGTGGTTCACTTTCCTCCT 60 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086539 3 1 2 99 5 120459326 120459344 AGCACTACTGCACAAAGGA 59 120459404 120461032 GACTTCTCTGATTTCTGATCCC 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000032112 1 2 3 88 4 158244479 158316613 GAGAAGGACTTGGAGAGCA 59 158316665 158316683 AAGAACTCTGCTTCCCTGG 59 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 1 2 2 80 12 22209636 22209973 CTCAAGAACGGCATGATTGAG 60 22209576 22209595 TTCGGACTTGACATGTTTGC 60 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892 2 1 2 80 17 76391275 76391294 GTGACAGTGACCATCAATGG 59 76389531 76391232 CACTTCCACAAACTCACCC 59 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000036273 2 1 2 81 3 136767453 136767471 AGCTTGTCTATGACCGACC 59 136745765 136767410 TCTCAAATTCAAGTCCAGGGT 59 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000065644 2 1 2 80 15 3974339 3974360 AGCCTATTGAACAAGAAGTCAG 59 3981771 3983831 GTTGCTCTGTGGCATTAGG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000065448 3 1 4 81 1 200671086 200692399 CACTTTAGAACCAGAAGATGCC 59 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000090393 3 1 2 122 5 118491160 118491178 TCCCTAGTACCATGCTCCT 59 118487302 118489834 CATCCATGATGCTTTGGGAG 59 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000082712 2 1 2 80 16 32371753 32371771 TCTCTATATGGAGGCAGGC 58 32371268 32371711 CAGTCTTGCCAGATAAACCTC 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000066634 1 1 2 80 20 46236742 46236765 AGTTCTTGGAATGGTCAAGG 58 46236806 46236826 TTTATCCAGATAGGGAGTTGC 57 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350 1 1 3 80 14 33117693 33121123 TACTGCTGGTTCCAATGGG 60 33121162 33121185 CTCCCTTTAACGTAATGTCTTCAG 60 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000057395 2 1 3 103 13 103253007 103253026 CGTACTGGTGCATATCAAGG 59 103249815 103251434 AGCAGGTAATAAGTTGTGCC 58 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768 1 1 2 80 19 39001123 39001141 GCCAGCAGTTTATCCAACC 59 39001183 39014550 GATTGTCACCTCATGAACCAC 59 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 3 2 2 80 12 17500921 17501927 ACCACCTGATGCTAAGACTG 60 17500860 17500883 CTAAGAACATCTTCCAAACTGGAG 60 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 3 2 2 90 6 125656674 125656692 TTGCTACAATCTGCAAGGG 58 125652926 125656620 GCACATACAGCGGTTATCC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000088679 3 2 5 81 9 81662728 81664256 AGGAAGCGTTCAACATCTG 58 81664299 81664319 ACTGACACTGTGTTATTGTCC 58 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000000683 1 1 2 83 20 30791682 30794217 GACTCATATCCAAGATATCGCTG 59 30794260 30794278 AATGAGGGCTGAGTCAAGG 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000090922 1 1 2 80 X 118200506 118200526 CTAGCCATTGCTGATATGCTG 59 118265406 118289362 TAAAGGCCAGACATAATCTCCC 60 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000085684 3 1 2 82 7 40245831 40245850 GAGCATCTCTGGTACATCCC 60 40245890 40246140 GGTTTCATTCTGAGATCTAAGGAG 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000048306 2 1 3 85 11 84399464 84399482 ATACAGAAGCGTCAGGGAC 59 84399532 84425170 ATTCCAACTGTGCTGTTCTC 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 1 2 3 81 14 25791727 25791745 TCCACCTCTTGTGTCTGTG 59 25791790 25859219 CTGGAGAAGGAGTTGTGCA 60 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 2 2 2 80 15 4002823 4002841 TTCTCGTGAACTGGATCGA 59 4002883 4003030 GTCATAAAGACACTGATCGGA 58 NA Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 3 2 2 80 7 38919688 38924101 CCAATGAAGACTTTCCAACCT 59 38924143 38924161 TGGCATCAAGTTCATGGTC 58 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000014060 2 1 2 91 3 2452768 2453043 GTCTGAGAAATGCAGGGAC 58 2452695 2452716 GTCAGTATTCTTCAGCTGAGAG 58 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000014060 3 1 2 91 3 2452763 2453038 AGAAATGCAGGGACCTCTG 59 2452690 2452711 AGTTGGTCAGTATTCTTCAGCT 60 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000083665 3 1 2 95 6 123290817 123290836 AGAGAAATGGAGCCCTTCTG 60 123211233 123221568 CTGGAGAAACTGCTTGTATCTC 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214 2 1 2 81 13 103323475 103324763 GATGGATGGGATGACCCTC 59 103324808 103324826 TGAACTGCTTCAGTCCCTC 59 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000021258 2 1 2 82 9 112008510 112023485 CAAAGACGAAGACAGAGAACAG 59 112008449 112008467 TGCTGCTCTCATTGACCTC 60 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000086957 3 1 2 146 8 53417367 53420422 GCAGCAACCCATATCTTTCAG 60 53420527 53420548 CTGAAATATCCAAGACTCTGGC 59 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537 1 1 2 112 20 31502140 31502158 GGATCCAGGGCTATCATGG 59 31488663 31492082 CTTCTCACCCTTCATCCCA 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 1 2 2 80 4 55821822 55832683 TGTTGCCAAGGTAATGCAG 59 55832726 55832745 AGGTGGATGGTCTTGTAGTC 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000048252 1 1 2 81 4 55816087 55816105 CAGAATGCGAGGAACAAGC 60 55816151 55816171 TACTTGAGGTCCGGATGTG 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075 1 1 2 80 3 148181343 148185610 AGAGATGTTCAGTTATGAGGAGTC 60 148185649 148185667 GACGCCTCTGTTGATTCCT 60 NA Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913 2 1 2 104 X 2116453 2116471 TTCTCTAAGAGGCGGAAGC 59 2105543 2116385 TTTGGATCAACGTTCTGCC 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 3 2 2 80 10 109973988 109974007 GGCTTGTCCAAGAATAAGCT 58 109972709 109973946 TGCATATTTGGGTTTCAGGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 3 4 8 86 6 128078983 128079003 GGCATCAAAGAAGTCTTCTCC 59 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000065720 3 1 2 81 9 96905259 96905277 TCCTACTCAGTCTCCAGTG 57 96905322 96970468 TTTCTTCTTGCTCACTGCT 57 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 3 2 2 82 1 100229678 100229696 CCCTCGATACCATGAGCTG 60 100229538 100229632 TCAAGAAGTCTGTCCAGCC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000007710 1 1 2 80 5 86406717 86406736 CTTCAGTCCCTCCAAATGGA 60 86403571 86406677 TTTGTTGACATCTTGCTGTAGC 60 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 2 2 2 80 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384458 148384563 CATGATCTCCTTCTCATCGGA 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000080966 2 1 2 88 2 196145615 196148411 GTTTCTCGAACAGCTTGGA 58 196148463 196148481 CTCAGAAGTTGGCTTCAGG 58 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138 1 1 2 80 10 71557130 71557151 AAGATTGCATCGTCTATTGTGG 59 71557189 71558309 CCAACCCATTCTTAACTCACTG 59 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138 3 1 2 80 10 71536648 71536666 CACCCGAAGACCTTAAAGC 59 71539042 71545961 TATTATTACTTGGCCCTGGGT 59 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829 2 1 2 81 10 51507919 51507937 TCAAGTCCACAGTCCACAG 59 51503019 51507878 CAAAGTGGACAAGATCTGTAGAC 59 NA Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 2 2 2 80 4 160536060 160536078 ATCGTCCTGTTGATCATCC 57 160535755 160536016 ATTCTCGTTCACCTTGTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 2 3 9 80 9 81545177 81545196 AACACCATCAACCTGATCCA 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798 3 1 2 82 7 67017916 67017935 CGAACAGAAATTCCAAGCGA 59 66982507 67017871 GATGCCCTCAGACTCAGAG 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 1 2 3 80 6 126103290 126103308 CCTACAGACCTGTTCTCCA 58 126103349 126105892 GTAGAACATATAGAGTGCACCA 58 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495 1 1 2 80 14 72121698 72121716 TCATGGGAGAACCAAAGCA 59 72018129 72121654 ATCTTGGGCTCTTTCCTGG 59 NA InUTR Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214 1 1 2 80 2 189859734 189859752 GACCAACAGGCATCAAACC 60 189859793 189860277 CTATGCCAAGAAGACTTTGAGC 60 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000072663 2 1 2 80 3 148422347 148422368 CTTTATCCACTCTTGTCGTCTC 59 148421248 148421875 CCTGCAAAGAAAGATCCCG 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344 3 1 2 128 2 116403732 116403750 CTGACCTATCATGTCCGCA 59 116401752 116403643 GATAAATGGTCGTTCTCCTGTG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 1 4 4 80 10 18571857 18571875 GCACATACGCACATTACCT 58 18571042 18571813 GAGCAGTCACAAAGTCCTC 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 2 2 3 81 19 10149365 10149667 GCCCTAGCCTTCAAGAGAC 60 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000018097 1 1 2 112 9 73943532 73947759 GATTGCCGAATTCAAGGAGG 59 73943439 73943457 CATTTGTGGGATTGGTGCC 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802 1 1 2 80 3 116952611 116954358 TACTGATACTATATCAGGTGTACGG 59 116954394 116954414 GTGATGAGGACATTCATGTGG 59 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000086250 2 1 2 80 20 21937102 21941626 TTTGATCTCAGCCACTGGA 59 21937040 21937058 GAACAAAGGTGGTTTCCGT 59 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000086250 3 1 2 80 20 21937050 21937070 GATTATGTCACCACGGAAACC 59 21935558 21937011 GGTGAATCAATGCTCATATCGT 59 NA Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 2 2 2 80 2 197963040 197963058 AGCAACGAGACAAATCGAG 58 197962818 197962997 GAAGAAGGTGTCTTTGGCTG 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000085788 1 1 2 80 14 83208896 83208915 ACTGTGACACAAGTATTCCG 58 83207388 83208854 GTCAAGAGTCACATCCTTGG 58 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 1 2 2 80 5 50125103 50125543 CTGGTTTGTTATCTTCCTTGC 58 50125043 50125063 CCTTTCATGATGTTGTCTGTG 58 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 1 2 2 80 9 81834195 81835246 ACAATATGCCTTCCAGTCGT 60 81835289 81835307 ATGGTCTTCTGCTGTTCCC 60 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000091573 2 1 3 92 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769967 117773138 GACTCCACTTTACAACCTCG 58 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000006802 1 1 2 82 14 86394989 86395007 CTATTTCCACATCGGCGAG 59 86394750 86394943 TTCGATAGTTGCCGATGAC 58 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000067536 2 1 2 82 15 34456420 34456439 AGTATTACTGTCGCCTGGAC 59 34456333 34456379 GAGTACATTCTCCATTGTCTCAG 59 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 2 1 2 80 3 172433390 172433414 TTATGAACGTGCCATTTGAC 57 172433565 172433586 CTGAGGTTCTATGACTAGATGG 57 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000078982 2 1 2 81 1 142145930 142148386 TCAGGAACTCAAAGGTCCA 58 142145867 142145887 GTGTTGAGGTACATGGAAGTC 59 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866 1 1 2 80 19 41712690 41712711 TATTACCAGTCAGAAGCTGAGG 59 41712752 41724180 TATCTGCACCACACCTCTC 59 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 1 2 2 80 20 27433394 27436551 ACAAGAAATCAGGTTCGCAC 59 27436590 27436612 CTGTAGATTCATCTTTCACTGGG 59 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210 1 1 2 99 6 28272614 28272632 CCAAGACTCACCTTCCAGG 60 28272695 28327934 TGGCTTTCTTCTCAGCCTC 60 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317 1 1 2 80 5 165427130 165427149 GAAGTGACCACCTACAAAGC 59 165427189 165427896 CACATATTTACCATTGCTGCTC 58 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000090265 3 1 2 81 18 77384143 77394662 GTATTCTCCTGCGAGAACG 58 77384080 77384099 GTCTGTCCCATAGGAGACAG 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 3 2 2 80 7 34636064 34636083 TGCACAATAAGAGTGAGCCA 60 34636123 34641550 ATTCACATTTACCTGAGTGTCG 59 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 3 1 1 61 5 126092297 126092315 CAGAGAAGGAGGGCTACAG 59 126087257 126087276 CATGGTCTCCTCATAAGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000089783 3 1 2 84 19 38091350 38100646 GGATATCACTTTAGATGATGACCAG 59 38100686 38100706 ACTGTGATTAGGCCATTTCTC 58 NA Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 1 1 1 70 7 144624135 144624153 CGAATGAATTCGCACAGTG 58 144624912 144624930 TACCGAGAGTAGATCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 3 2 2 80 20 32059002 32060483 GCTCTTACAGTTTGCCAGG 59 32058940 32058958 AGAGGCCACTTGATGTACC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 1 1 3 80 14 34135880 34142733 GGCGTGTTCATTAATGTGGA 59 34135819 34135840 GTGAAAGTTCTCCATCATGACC 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000090576 3 1 3 110 3 21850597 21850617 CTATCCTCACAGCATGGCA 60 21850504 21850523 TTACAAAGCGCTTGTCATGG 60 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 3 2 2 80 2 93795276 93795888 AAAGTGAAGAGCATCATAACCC 59 93795927 93795947 CTTTATGGTGGTCGACTTTCC 59 NA Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 1 2 2 80 5 120639706 120642143 ATGAGTAAAGTGAATGCTGTGC 60 120642184 120642202 TGACAGTGTCCAGGAAAGG 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000085126 1 1 2 82 15 3459800 3461665 CAAGTGGTCTAGTAAGGGCA 59 3459737 3459755 TTACCAGCCGAGACATCTC 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595 1 1 2 117 6 93519022 93519042 TTCGTCAAACATGCCATACAG 59 93519121 93521142 AGATGAGCACGAGTTGGAC 60 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 2 2 3 120 9 111244241 111244259 CTTTGATTTGTTACGCGCC 58 111244342 111244704 CATCACGATATTGCCAAGGA 58 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000045050 2 1 2 90 14 36188572 36188590 GAAAGAAGCAGCACTTCCA 58 36174391 36188518 AGGTAATCTCCTGCTTGGT 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204 2 1 3 81 2 240627731 240642900 AGGAACTTAGTGATTTGGCC 58 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 3 3 7 119 15 34646202 34647381 TCAACACTGAAGGAGGAGAG 59 34646102 34646121 GGAAACCACCACAGTAATGG 59 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296 2 1 2 80 6 64274498 64281428 GAATGATCTTCATCAGGATGGA 58 64281467 64281487 GGCCAGATACATTTACATTCG 57 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000085465 1 1 3 81 20 35334402 35334421 ACTCATCTTCAAGGGAGCTG 60 35324720 35334364 CATTAGTATTTCCTTCAGTCACCAG 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 3 3 3 81 18 73260153 73260176 CTTAATAGAGCAGAGACAAGTCAG 59 73260216 73263202 GTGGGTTTGAACTCCTGTG 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857 3 1 3 89 18 73226640 73226658 CGTTGTACTCCCTGATGCA 60 73226711 73235085 CCCAGCCAATGTTCTTGAG 59 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000029634 2 1 3 80 8 13871595 13871707 GAGAAGCTATCTACAAGTTCATCC 59 13871424 13871442 GCTCCTGTTTCTCTTTGCT 58 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640 2 1 2 80 3 5544084 5544954 GAGATCCAGGTGTACAGACG 60 5544995 5545015 CCGTTGGAAGTAGGTAAAGGT 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000070819 3 1 3 86 9 95105337 95105356 TTAGTGACCCATAGGTTCCC 59 95103978 95105288 GACTCCACCAACTTTCAGC 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 3 2 3 80 9 95091554 95092575 ACTTCCTCTCAGCTGTTCC 59 95091492 95091515 TTCTTCTACTATGACTTCCAGCTC 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143 3 2 4 85 1 81796497 81796515 AAGACCCTTCCTGTCTCAG 58 81796564 81796901 TTCATGAAAGGCCTGTCTG 58 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000080840 1 1 4 154 1 81779929 81780025 CCATTTAGAGGTGAACCCAG 58 81783700 81783718 TTAGCATGTCAGCATGCAG 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 3 4 4 80 1 81793822 81794026 CTGAGCGAGTTCAAGAACC 59 81794070 81794088 GTCTTTGGTTAGTCGCCAC 59 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000082891 1 1 2 80 18 11829157 11829178 GTGGACAATTACAGATACACCT 58 11828592 11829118 GTGTCCTCTAATGGTTTCCTC 58 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000082891 3 1 2 80 18 11829159 11829181 GAGGTGGACAATTACAGATACAC 59 11828595 11829121 TCCTCTAATGGTTTCCTCACC 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000011801 3 1 3 82 13 52291785 52294636 ACCAACATAGTTCATGGCTC 58 52290978 52290996 GATTGCATCCTCTCCTCAG 57 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 1 2 3 80 2 250763783 250765227 TTGTCGGATATGACAGGAGG 59 250763722 250763740 GGAAATCCCACTGAAAGCG 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 3 2 2 85 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934974 29934994 AACATCGTTATCACCATCACG 59 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 2 1 1 60 1 163807147 163807165 TACACAACAGTGAAGTGGG 57 163809700 163809720 CACTTACACTTCGTTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 2 2 2 80 7 50173798 50218847 AAAGAAGAGCAAGAGAAACTGG 59 50173739 50173759 AATGACAACAGTCAGTTTGCC 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 1 2 2 80 11 87916345 87916365 GGAATGAAGACTCTTGAAGCA 58 87915050 87916303 CTCTCGGGTTCTGTTTGTC 58 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031 2 1 2 83 5 59412868 59412886 CTTGAGCATCGAGTCAGAG 58 59412932 59413643 TTATTGCAGGCCTCAATCTG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000043079 3 1 4 80 7 78462382 78482264 TTCGAAGAAATATCGCTCAGG 58 78482306 78482324 CTTACATCACTGTCCGAGG 57 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 1 1 1 100 7 11625403 11625421 TACTAACAACGTCGCCCAG 60 11626365 11626383 TCATCAGTTCTGACGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004295 3 1 6 80 10 53743006 53743141 GGATGATCTACACCTACTCGG 59 53743181 53743201 CCACCTCTGCATTATACACTG 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 1 3 3 80 4 162017578 162017596 GTCTAGCTGACTGTGGTGG 60 161953931 162017537 TCAAGTTCCGTAGGAATCTCAG 60 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000073105 3 1 2 80 12 31233301 31238043 AACTGGAGATATCATGGAAGG 57 31233241 31233260 CCGTAGTAGAGAAACGTCAC 58 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000081815 2 1 4 80 9 104692944 104694147 TCTGGGCAAATCTCTTGGA 59 104692882 104692904 GGACTCAAATTCTTCATTCCTCC 60 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869 1 2 3 80 13 71983309 71983327 CCAGAAACATGCACTGCAG 60 71979088 71983269 CTTCTGTCTCTTTCAATGGAAGG 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000041577 3 1 2 80 8 22620637 22621131 TGATTCCCTTAGGCTCCTC 58 22621175 22621193 TGGTGAACTGGTTGTTGAC 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 2 1 1 61 1 229349181 229349199 CTTCATTCGATGCTCCTGG 58 229349871 229349889 ATCAGTCCATGTGTAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 1 1 1 60 10 74386488 74386509 CTGTGTACACAAATTTCACTCC 58 74384387 74384405 GTTCCTATCTGCCTCTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 1 2 2 80 16 8316601 8316619 GCTCTTTGAAGCAGATGCA 59 8316661 8317146 TGCTCAGGAATTTGAATGGTC 59 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846 2 1 2 80 13 53304201 53304219 TGAAGACAGTGCTTCTCGT 59 53304260 53309106 CTATGACAACCTTCACATGCTG 60 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228 1 1 2 84 8 117812407 117827472 AGTTTCAACTCTTGCGATGAC 59 117827516 117827536 TCTCCATACCAGTCTATGGGA 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000073255 1 1 3 156 1 189985053 189986398 AGCATCCTGAATACCAGCT 59 189986819 189986839 TCACTGTGTTGAAAGACTCTC 58 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000073255 3 1 3 157 1 189985052 189986397 GAGCATCCTGAATACCAGC 58 189986819 189986839 TCACTGTGTTGAAAGACTCTC 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000026719,ENSRNOT00000087595 3 2 5 80 9 97981807 97987414 AAAGACATCACAGCACAAGAC 59 97981747 97981765 ATCGAAATTGGCCTTTCCG 59 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291 1 1 2 81 8 49300849 49306235 CCAGGAAGAGTATGAAGTCTCC 60 49300789 49300812 CCACTTTAAGTTGTCCTCATTCTC 60 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000049917 3 1 3 86 14 773161 773183 GAATAGTGAAGAGACTGATGGAG 58 768107 773120 GAGTAAGAGTGTTCAATAGGTTCC 59 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977 1 1 2 107 12 30808173 30808191 CAGCTGTCTGAAGAGGAGG 60 30807472 30808104 GTATTCTTCCTCTTGCCTTGC 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930 2 1 2 80 4 86127132 86127514 CTGGACTCTGAATTCTTTGTCTC 59 86139210 86139229 TCCTTGTTCATGCAAAGGAG 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000033863 3 1 2 116 3 172722992 172734964 TGAGAGCAGGAGTTTCTGG 59 172800974 172800994 AGAGGGAATGTGTTTGTTACC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 2 2 5 82 11 78309227 78327256 GACTCAATTTAGTGAGCCACAG 59 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 3 2 2 88 19 949940 951687 TTCTCCACCAGGCTATGAG 59 949870 949888 CTGTCATCGAGTAGGGTGG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 2 2 3 84 6 132773943 132773961 CTGTGAAGTAGACGTGTCC 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704 1 1 2 85 5 173337574 173337592 TCCCTTGGGCAAGTATCAG 59 173336876 173337525 TTTCCCAGCCAAAGTTGTC 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497 3 1 3 81 11 11516607 11516626 GGAACTTACGTTTGTGTTGC 58 11213809 11516565 CTCGCAATAATGCTACTTCCA 59 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 1 1 2 101 6 139293144 139293162 CAGCTTGGGTTTCCTTGTC 59 139293337 139293355 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339 1 1 2 96 10 104540029 104540132 AGAAGAAAGACTGCCTCCC 59 104540194 104540212 TATTTCCAGCAGAGCAGCA 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770 2 1 2 84 4 6938816 6942261 GTGAACAGGATCCTAGTTGC 58 6942307 6942326 GTCCTTTATCCACAGTCCAC 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 3 2 6 81 1 41532721 41561428 CTCTTGGACAGGAATCAAGG 58 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 2 2 6 80 1 41532722 41561429 TCTTGGACAGGAATCAAGGT 59 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 3 3 4 82 17 34831306 34831324 GTCTCTGAAGAGCTGAGCC 60 34831369 34835976 CAGATTTCAAGTCTGGCCTG 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 1 3 4 80 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000001373 3 1 2 109 12 37451443 37451727 AGTTTAAGTACAAGGCAGACAC 59 37451797 37451815 AAACAGCAGTGTGATGAGG 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 1 2 2 80 20 25064982 25113502 TCATCGTGTCAGCTTTGGA 59 25064920 25064938 TCACTGTTTGCACTACAGC 58 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571 1 1 2 81 5 134484618 134484636 AAGGGAGAGCATGGAAGAG 59 134477694 134477730 TAAGACAAACCTGCCTGGT 59 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 2 2 2 80 4 57805012 57805034 GTTTATCAGAGTGCTATCAACCC 59 57803191 57804973 ATTTCTGCCCTTTGGAAGAC 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 2 3 3 81 4 162166197 162166785 AGGAGGAGCTGAATTTCCT 58 162166830 162166848 GGGTCTGCTGATGATTCTC 58 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 2 2 4 94 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583965 4584133 CACCATTCACTCCTCTGGG 60 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 3 3 3 80 3 118152233 118175176 GAGTGAACATAATAGGTGAGCA 58 118175216 118175235 CTATTAGCATGTCCTGCTCC 58 NA Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 1 1 1 60 1 198528661 198528680 CAAGATTGACCCAAGGTGAC 59 198529118 198529138 CAATTCGGCTCTTCTAATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 3 2 2 80 10 13166184 13166202 GAATGTGGCTTCACCAGTC 59 13163195 13166140 AAAGGTGTCATCTGCTCGA 59 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713 1 1 2 102 9 15695793 15695811 CTCCATCTGCCTGAAGGAG 60 15694254 15695727 TCCTTCCTCCTGTTTGAGG 59 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000091488 2 1 2 80 6 55677883 55685479 GTTGAAATCGGTTCTGATCCC 59 55685521 55685539 TTCAACATCCACAAAGCCC 59 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000028854 2 1 2 80 3 123597649 123597669 CTCCCTGATACTCATCTGGAC 59 123597350 123597609 ATTGCAAACCATTCTAGGTCC 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000081621 1 1 2 97 9 16071510 16071530 ACAGTGACATCATGAACTCTC 58 16072967 16072988 TCCTCTAACCCTTATCGCT 57 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000067420 3 1 2 90 8 53313870 53313890 CAATAACTGGAGGAGAGTGGA 59 53313940 53319674 TTCAGGCAACTGAATAACAGC 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724 2 1 2 83 8 53313934 53319657 TTCAGTGCTGTTATTCAGTCTC 59 53319701 53319719 AAGAATGTTCTGTGGCAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027593 1 1 3 80 10 15461981 15463368 TCACATCAGCAGGAATGTC 58 15461919 15461938 CTGCTCTGAAACCATAGCTC 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907 1 1 3 80 13 56077120 56096843 GGAGATCAGGAAGTTCTGC 58 56098743 56098763 TCCAACTTGATTCTGAGACAC 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000059592 1 1 3 86 12 21756463 21756481 TCACCTGGACAGTGATGAC 59 21749285 21749641 GACTTCACCAAGTCCATGG 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000059592 3 1 3 165 12 21756542 21756560 TTCACAAGTCTCCAGACCC 59 21749285 21749641 GACTTCACCAAGTCCATGG 58 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 3 2 2 80 19 61441962 61449955 GCTGCAAGATAACAGATTACCC 60 61449994 61450014 ATGCTGTAATCTGGGAGTCTG 60 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 2 2 2 80 9 16869174 16869193 TTCCGAGTTCCATCTCTTCC 59 16869236 16871955 ACCGACATGATCAACTGGT 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 3 2 2 80 4 165622665 165625304 TGTTTGTACACCAGACTGC 58 165622603 165622623 ACTCTACAGTTTCTCCATCCC 59 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 1 2 2 82 7 12607671 12608825 ACTACATCCAGCAGGTCTC 59 12607607 12607625 GAACACAGTCACGTACCAG 58 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209 3 1 2 81 2 12111949 12111969 TGAGAATATGAGCGATGAGGA 59 12112011 12112798 CAGTGTAGCTTCATTCTCCC 58 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746 1 1 2 80 12 39395844 39395863 GATCCAGAGCGTGAATTACG 59 39380521 39395803 CTCATCAAAGCAAAGCTAACG 58 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787 3 1 2 81 9 17120979 17120997 TCCACACCACTGACTTTCC 60 17121042 17122771 ACACGGAAGTTCTTCTCGA 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742 3 1 2 81 17 1723453 1723471 ACAAGGAGACAGACTTCGG 59 1705042 1723408 GTCAAAGCCATGCAGAGTG 60 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 2 2 2 80 4 9471610 9471628 CACCTGCCTACAACAAACC 59 9471670 9525407 TGCAGTAGCCATGAAATTCAC 59 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 1 3 3 80 X 71184405 71184423 CAACCGCTACAGCTTTGTC 60 71184464 71184658 GCGATGTCATTTACCCTATCAG 59 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000040334 2 1 3 87 X 71193904 71193924 TATAAGACCTCTGTGTACCGG 59 71193973 71194161 ACATTCCCTGACTCTGCTG 59 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000078117 1 1 2 92 8 13248031 13250741 ATTTCACAGCCACATGAGC 59 13247957 13247975 ATCGACGAAGTCCTGTCTG 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000080335 2 1 3 81 13 56607263 56607281 ATCCAGGGTTCAGATGCAC 60 56610493 56612913 CTACCTTCTCCTTCTCTTCCAC 60 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675 2 1 2 89 4 65132767 65132787 CATGACATCGATTGTCGCA 59 65134267 65134287 TCATCCTTTAACAAGGGTGGA 59 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 3 3 3 80 19 10432512 10434234 TCTTCTCCTTCCATAATGCC 57 10432451 10432469 ACTGCAGTTCCTTCTTGAG 57 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949 1 1 2 80 8 22161434 22161453 ATGCCAAGTATCACATGCAG 59 22155432 22161393 ATAATCCTTCCTCCACTCCAG 59 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564 3 1 2 86 18 27635008 27635029 GATGTACTGGCTAGTCTTCG 58 27639506 27639525 TTGAGCTCAAAGTAGAAGGG 57 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 2 2 3 81 12 36695272 36734421 GCAGGTGCTCAAGAATGTC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 3 2 2 80 11 86672526 86674249 CAGGAGCATATAGAGGTTTACC 58 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601 2 1 2 80 8 23366867 23367994 GCAGAAGACTGAAGCAGTG 59 23366805 23366825 ATGTCGTTAATGACCTTGGAG 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 3 2 2 91 9 16975247 16975265 CTGTGTTAGCACAGCAGAG 59 16965478 16975192 CAGTCAGGTCATCCCTGTC 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165185215 165185235 GAATGTAAACAGACCTGCCAG 59 165176321 165185173 TTGCTGAAGGAACTTCCGT 60 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 1 1 1 60 11 71757640 71757658 ACCACAACCCTGATATCCT 58 71756189 71756207 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 1 2 2 80 2 250733891 250736669 AGCCAAATCCAAATGCCAG 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 1 2 2 80 9 17821055 17821074 TCAAATTGTATGTCCGTCGT 58 17821117 17821274 CACCACGGATGAAGTTGAG 59 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 3 2 2 80 17 9625118 9626020 CTTCAAGAGGTTCTGTTTGGA 58 9626062 9626080 TTCTTGAGGCTGAAGTTGG 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259 1 1 2 103 11 33978743 33978761 TGTAGAGCTGTTCTACCGC 59 33978828 33980187 TCCACCTTGTTCCCTTGTC 60 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000045763 1 1 2 145 9 17931449 17931467 CCACTTCCACAAATTCCCA 58 17934690 17946769 GTTCGATTAGCAGTGGAGAG 58 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000045763 2 1 2 146 9 17931449 17931467 CCACTTCCACAAATTCCCA 58 17934692 17946770 TGTTCGATTAGCAGTGGAG 57 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216 1 1 4 80 5 58554267 58557715 GATTTCATGTTTGAGATCAGCC 58 58557755 58557774 CATTGTGTCCCATATCAGCC 59 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 3 2 2 80 1 280146534 280150070 AGATAGCAGTAGTCCTACCG 58 280146473 280146493 GTTACACTGGATACAGAACCC 58 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000091316 3 1 2 82 9 114990103 114994606 CTTAGTGCCAATCAATGATGAG 58 114990042 114990061 CCCGCTTCTTGTAAGTATGG 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 2 2 2 121 18 64015931 64015949 CACGTTCCTTCATCAACCG 59 64033404 64040276 ACACATGATCTCTGAAGCCC 60 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201 2 1 2 114 4 117264330 117267243 GTATCTCAGTGTGGGAGGG 59 117264234 117264252 CTGAAATGTGCAGAAGGGC 60 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 3 2 2 80 8 22944405 22944425 CGAGATCTCAGAGAATCTCCT 58 22944464 22944829 TTCATCTTGGTAAGAACCTTGC 59 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255 2 1 2 80 8 22940202 22941927 CAGCATAGTCAAGAAATCCCTG 59 22942333 22942353 TTCTGAGAGTCAGGAATCAGC 60 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 1 2 2 80 6 55423176 55423199 GGCTGATATAACTGGAAGATACTC 59 55423235 55423761 TTCATGTTGTCTATCAGCATGG 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054 2 1 3 94 16 49562101 49562119 GAAACTCGCTTATGGTCCC 58 49553510 49562043 AAGTAGTTCACATCCTGCG 58 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122 1 1 2 80 10 70719634 70719655 AGGAATTCCTGTAATCAGTGCA 60 70719690 70721587 GATCATTTCTGTAGTCATTTCTCCC 60 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 1 2 2 127 5 64673615 64673633 GTCAGAATTCCACCCAAGG 58 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 3 2 2 87 8 85513344 85513365 AGACATACAGCTACTAGAAGCC 59 85513412 85518614 CTTAAATGCCTGCAGCAGAG 60 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354 2 2 3 80 11 34067853 34070690 ATTCCTTAAGGGCTTACTGC 58 34070732 34070751 GTGTCTTCACTTTCTGTCCA 58 NA InUTR Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000079783 2 1 2 80 19 57455886 57458322 AGCGAGCTGAAATTCTGTC 58 57455824 57455843 AGGGCTGAAGTTGAATAGCT 59 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000068077 1 1 2 83 6 71349048 71349066 CTCCTTCAGGACTCCTCTG 59 71180531 71349001 TTCAGGGAACTTCTGGTCC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 3 2 2 80 7 70335243 70335864 CTACATGAACTGCAGGTGC 59 70335907 70335926 ATAAACTGTGCGAAGTGTCC 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 2 2 3 80 4 164300936 164300956 CATGGATGTAAACAGACCTGC 59 164146103 164300897 CTGTAGGAACTTCAGTTCATCC 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 3 2 3 83 17 30623119 30625418 TTTCACAGGAGTTGGTGAC 58 30625464 30625483 ACCTTGTCCTGTATTTCACC 58 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 2 2 2 80 3 61441745 61441763 GCTCAAGTTCAACTGGTCC 59 61440229 61441703 GAGGTATTGTTCCTCCTTCAG 58 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000071439 1 1 2 95 9 20216285 20216303 AAGTACACGAGAAGCTCCG 60 20216362 20216504 CTCCAGTCACAGAACCTCC 59 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907 3 1 2 105 4 148399418 148399436 ATTCGATTCCGCAAGAACC 59 148399330 148399349 CTGTTTGGAACCTGTCTGG 58 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 1 2 2 80 2 205648805 205652617 CTTCCCATTGAAGAGGTGC 59 205653515 205653534 CATGATCTCATCCTCGTCAG 58 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 1 2 3 81 4 22111748 22111766 ACGAATTCAGGGAGTCGTG 60 22111810 22115360 CACCACAAACCTGTCATCTC 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927 3 1 2 80 14 78682838 78684860 AAGAACAAAGGTCTCAGGTC 58 78682777 78682795 ACTTGTCGAAGATGCAGTC 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000046370 2 1 2 80 11 4261693 4261711 ATGGCACTTATCGATGCGA 60 4177350 4261652 AATTGGGATCGTGTACAATGAG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000040566 3 1 5 108 2 258803598 258805537 AACATTAAGTCTTGGGTGCTC 59 258803510 258803528 GATAAGCCATGACAACGGT 58 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 3 2 2 84 7 54912820 54916061 GATTTCAGGGCATTCAACAG 58 54916108 54916126 AACTTCATCAGGCTTGCTG 59 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 2 2 2 80 11 15487936 15487957 AATATGTTGATCCATCCAGAGC 58 15487998 15491089 CACTCACATCTTGCTGCTG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 3 4 4 80 14 79421772 79421794 CCAGTCTGGAGCTTATTAAACTG 59 79421833 79425701 CATGATATGGACCACCTTGC 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 2 3 3 139 1 168946041 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965432 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 2 2 2 80 14 66742820 66744688 ACTAAAGAGGAAATGCTGGAC 58 66744730 66744748 ATCTTCCTTGAGGACAGGG 58 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 1 1 1 60 1 5381536 5381557 ATCCAGAAGGAAATTCATCCTG 58 5387064 5387082 AATGCAGTACTGAATCGCC 58 NA DesignNoJunction Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456 3 1 4 81 2 18522665 18544072 AACAAGACAGGACCTGATCTC 60 18522604 18522625 ACACATAGGAAGTCTCAGTAGG 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698 3 1 3 80 12 37398463 37402401 TCTGTATGTTAGAATCCTGCCT 59 37398404 37398422 CAATGAACGGCAGGAATCG 60 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542 2 1 2 80 2 136994062 136994267 CTCCCTTCTACCTTCACCC 59 136994310 136994329 ACATACACCTGGTACACTGG 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000088223 1 1 3 83 7 135515979 135522965 GAGTCTGACTGGGAATGGG 60 135515914 135515933 CAGTTGGTGGTAGTTCACAC 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000026466 2 1 2 80 1 199352976 199353001 GTAGTCTTCCTTTCATCATTGC 58 199353284 199353303 GAAGTCTGTCAACTTCTGGA 57 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 1 2 2 80 5 59533404 59533423 CCCTTCCTATGACAAACTGC 59 59528969 59533363 TTTACATCATCACCTAGCCAC 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000078244 3 1 2 126 1 201477179 201478413 ATACAGAGGAGCATTCCAGC 60 201478499 201478520 ATGGTATAGCTTGAGACCAGAG 59 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 2 3 3 80 4 165986751 165988390 ATGGCTCAGATGAAGAGGTC 59 165985857 165985876 GACCATGTTTCTGGTTCTGC 60 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000075678 3 1 2 93 7 119702377 119702397 ATGTCTACCAATAGCTCTGGG 59 119702301 119702321 TTAGAGTCAGGACAGGCCT 60 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973 1 1 2 81 10 109604598 109609943 CCGAGAGGATCATAATCCGT 59 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000079072 3 1 2 80 1 185863256 185863274 TGAAGTTCTGGCTGATGTG 58 185863316 185878840 TGCTTGGAAGACATTCTTACG 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 3 2 2 80 9 27409666 27412165 TATGAGAAGGTGTTGAAGAGC 58 27412206 27412225 TTCAACCAGGGAAACATCAG 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 2 2 2 80 9 76766287 76767143 ATGGCTACATAACGTGTGAC 58 76766226 76766244 GTGTGCTTGAAGTGAGGTC 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341 2 1 2 81 3 35173750 35175386 AAACAGAAGTCCCTTTCTTGC 59 35175429 35175447 CCCTCATCGATCACATCCA 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000061921 1 1 2 80 6 7017279 7031683 TCTAGATGCCTCCAAGATTCG 60 7031724 7031743 TCTAGTTGCAGGCTTCTGAG 60 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 3 1 1 64 9 37057153 37057171 GTGCTTCTCGTTTCAGTGC 60 37057201 37057219 CTTGGGATAGTGCTGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241 1 1 2 115 16 18640873 18645733 TGGTTATTCTAAGAAAGGTCCC 58 18640779 18640797 TATTGGGTCATTTGGCTGC 59 NA InUTR Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 3 2 2 88 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371888 67372037 TCCAGCTTCACCTTATGGG 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 3 3 3 80 7 2470143 2470293 GAAGAGGAGGTTGATGAAACG 59 2470333 2470353 CTTTGCTCTTGACACATTTGC 59 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 3 2 2 88 4 170157953 170160918 AAGAAGTCAGGTCTGAGCG 59 170157883 170157901 TGAAGAGGAGTCAGCTCCT 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 2 1 2 80 2 24224273 24224804 GTTCTTCAAGAAAGGTTTGCAG 59 24224844 24224863 GGAACCTTCCTTCAGTTCCA 60 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682 1 1 2 190 3 46809632 46812792 TGTATCTGCCTACCAGGTG 59 46806050 46807144 TTGCAGGCATGTATGTTCC 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026 3 1 5 81 4 176279634 176279654 AAAGGCCAAGGAAGAAACG 59 176271189 176271208 TGAACAGCATGTAAATCGGG 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033 1 1 3 85 11 31147286 31147304 CATGTGGTCTGTGAATGGC 59 31144992 31147237 TTAACTTTCCAGCCTTGGC 58 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 3 2 2 80 3 14505745 14505764 AGGACAAGAAGATGGATGCT 59 14505805 14506021 GAACCTCTTCGATCACAAAGC 60 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527 1 1 2 80 2 143674640 143680505 CCCATGACTGTCTATAGACCT 58 143680544 143680565 TTCACCTTCTTTAATCAGCCTG 59 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000017453 3 1 2 83 2 143677506 143677526 TATAACCAAACTCGTGGAACC 58 143677571 143680513 GTCATTGCAGGTCCTTCTG 59 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000031855 1 1 2 80 5 155966638 155968391 CAATGAAGGGCAGTGATGG 59 155968434 155968453 CATCTAGTTGCTCAAGAGCC 59 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 1 3 3 80 7 117362795 117362813 TACCTTACTCCCACCATCC 58 117362652 117362754 GAGAACTTGCACATTCTTTAGC 58 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217 3 1 3 190 4 147686602 147692069 AAAGACTTCAGGTTCATGGC 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149 2 1 2 82 1 134832408 134833698 AAAGAAAGGAGCCACTGGA 59 134832344 134832362 TCTCCGTGTCAAAGTCACC 60 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 1 2 2 102 7 70479897 70480270 GGATCAAATGTCGTTCGTCC 59 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 1 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 2 1 1 80 9 97355952 97355970 CAGGAAGGCAAATCACAGC 60 97365599 97365618 GTCAAACAGATGCACATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 2 2 2 81 9 38480069 38490828 CTACTATCGAGGAGCCCAG 59 38480006 38480024 TCTCCAGCTGGAAATTGCT 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000048345 3 1 3 80 19 21489621 21491425 GGAATGCATGTACTGTTGAGAG 60 21489562 21489581 CAGTTGAGTCTTTGCTCTCC 59 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 3 2 2 80 10 56289069 56289087 AGTACTCACCCAGAAGCAC 59 56288722 56288890 ATGTCAGAGTCCTTGGAGG 58 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843 3 1 2 80 3 2032370 2032388 CAGAGGAGGAACAGGAGTC 59 2030849 2032331 TACTAGATTCAGAACTCAGGTCAG 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 3 2 2 82 13 86450801 86450822 GATTACAGAGCCAAACTCTCAC 59 86444914 86450759 GTGAATTCATTGCATGCCTG 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 2 3 3 80 7 68512166 68512184 TTCAAGACCACCTCCAGTC 59 68453071 68512122 ACTACTGATGGGACCTCCT 59 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000058068 3 1 3 80 14 81948657 81951872 TCTGGAATATAGACAGGGCTC 59 81951914 81951932 GGATGCTTGGCTGAAAGTC 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 2 8 10 80 10 87127518 87128305 TACAGCAGAAAGGTCTGGG 59 87127456 87127474 GCCACCAATAATCTTGCCA 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000041571 1 1 3 80 4 150719816 150719837 TTCTTCATTCTGCTCAGTAGCA 60 150718429 150719775 GCCTAGGATGTGGTTCCTG 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000084499 1 1 3 137 6 3767585 3782240 CAGACTTAGAGGCAGGAGC 60 3767064 3767082 CACATGCGCCAAGTAACTG 60 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000088208 1 1 2 82 8 59223430 59226091 AGGACCGTGTTCTTAAGCA 59 59223366 59223384 CCTTGCTGGTACTTCAGGT 59 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000016828 2 1 2 81 9 38734430 38744492 GAGATGACGCACAATGTGG 59 38744537 38744555 TTAGGATTCGCTGGCTCTC 59 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 1 2 2 80 9 100298056 100298972 TTTCTGCTAGATAAGTTCCAGG 58 100297997 100298017 GGTCTTCTGGAAGATGTTCTG 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 1 2 2 60 9 42882403 42882421 GAGAAGCTGAAGAAGGCCA 60 42882444 42882807 TTTCTGATGTGGTCTGGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600 3 1 2 85 8 94007927 94007947 GCTGCTGTTGATACTATCGAG 59 93950379 94007880 AATGAGAGCACCAAAGCTG 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 1 1 2 80 13 73027913 73056641 AGCAGTACATCCAGTATGAGG 59 72984028 73027874 CATCTGTAACTTCCACAGAAGG 59 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 1 2 2 80 13 85476280 85476299 GGATGAAATCCATGTTTGCG 58 85476339 85481540 CCACTCTACCATCAAATATGGA 58 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894 2 1 2 80 14 64739602 64739623 GTCATATTCAGACCAAACGTGG 60 64739663 64739683 GGTGGACAGTATTGGGAGAG 60 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929 2 1 2 157 14 82787877 82787895 AACAAGGACCACCTGACAG 60 82788439 82788537 CAGGCTTGACAGTCTTCCA 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000011784 3 1 2 81 10 13808329 13809265 GATATCTGCCATCAATGGCG 59 13809309 13809327 GTTGTCCGCCATTATCCTG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 1 1 3 80 11 36770795 36770815 TACAAATCGGATGAAGCAAGG 59 36775507 36778519 TAACACGCATCTCTTCTTTCC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 1 3 5 80 X 159169770 159169789 AGTATTACTGCGTGGATTGC 59 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000077908 2 1 4 82 1 201155668 201164782 CTCCACAGAGGACTTCTTCAG 60 201164826 201164844 GTCTCCTTGCTTCTGTGGA 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000074889 3 1 3 81 14 5938302 5941745 GAAATTGATCCCAGGACTGG 58 5941788 5941807 ATCATCCAGACAAGGTACCG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445 2 1 2 80 X 159190140 159190159 TCTAGAAGCACCTCTTCAGG 59 159189325 159190098 TCCATTTCTGGGTTCTGAGG 60 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 2 1 2 80 19 19779358 19779376 AACAGCACCAACAAGTCAC 59 19771886 19777395 CACTGAAGGCAATGCTTGG 60 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000017900 3 1 2 124 8 59457133 59458555 CCAAGTGCAGGATACACCT 59 59474049 59474068 ACCCGTATTGAGTAAGGCAG 60 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922 3 1 2 94 8 59420197 59458554 CAGAGCCCAAGGATACACC 60 59458612 59458630 TGGTGCCTCCAAGTTTAGG 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348 3 1 2 80 19 22603080 22603099 GGAAGAAACTGGCATCTGTG 59 22594181 22603038 TCTGCTTCCTGTCTGAAGTG 60 NA Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 1 2 2 80 10 94620140 94622450 CTACATGGGTAAGAAGCAAGAC 59 94620081 94620100 AAGGCTGATGACAAAGTCTG 58 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 2 1 1 80 9 37753781 37755288 GGACTTTAAAGTGAGTGGACTG 59 37755328 37755347 TGCAACTCATCTGATTGCAC 59 NA Rattus norvegicus 81 Sema3b ENSRNOG00000016512 ENSRNOT00000066296 2 1 1 80 8 116358930 116358949 CATCTTTCGAAGCTTGGGTC 59 116357653 116358889 ACAAACTTGGGTTCATTGAGC 60 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 3 2 2 80 19 24853471 24853865 TGCAGGATCCTATGGAGGT 60 24853906 24853927 TGAGTTTGACGTAATACTGCTG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000024763 ENSRNOT00000034026 3 1 1 60 X 21313762 21313782 AGCTTTCAATGTGATCAACGG 60 21313720 21313738 CATGAACTCTTGCATGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Mospd1 ENSRNOG00000002332 ENSRNOT00000003192 1 1 1 82 X 157759933 157761597 GTGGATATTGTCATTCGTCATAGAG 60 157761637 157761655 TGTTCCGAAACCTGGAGAC 60 NA Rattus norvegicus 81 Tax1bp3 ENSRNOG00000019357 ENSRNOT00000056460 1 1 1 147 10 59746509 59747128 AAACAGACAAGGTGAACGG 58 59747239 59747257 TATGACAGCATGGACTGCT 59 NA Rattus norvegicus 81 Nxt1 ENSRNOG00000004700 ENSRNOT00000006205 3 1 1 100 3 142993680 142993698 AGAGAAACTCTTCTGGCCC 59 142993761 142995849 CCTTAGGGATCCAGTGACTG 59 NA InUTR Rattus norvegicus 81 Lalba ENSRNOG00000010811 ENSRNOT00000014456 1 1 1 80 7 140089822 140090269 CATCTCCTGTGACAAGTTCC 58 140089761 140089779 ATCCCTTTGATAGCCACGA 59 NA Rattus norvegicus 81 Ankfy1 ENSRNOG00000016212 ENSRNOT00000021816 1 1 1 80 10 59281703 59287316 AGTTAGACTTGTCAGATGCGA 59 59287355 59287376 CTCTGAACTCTAACTCATCCGT 59 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 2 2 2 80 5 62164778 62165734 TGATTACAAGGTGATGGTGTG 58 62164718 62164737 TGGTGACAGTTGATTGTCCT 59 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029 3 1 2 88 10 88336904 88336922 GTGTGGTACCAGGATCCTC 59 88336973 88337265 AAGGAGGAGAACTCTTCTGG 59 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325 1 1 2 82 1 68436600 68436939 CCACCAACAATCGACTTCAG 59 68436982 68437002 GGCTAAATCTACCACATCTGG 58 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 1 1 3 80 10 59556440 59556458 ATGTCTCTGCCTGTCATCC 59 59556499 59556909 AAATGTCTCAAGAACACCATCC 59 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 2 2 2 80 2 153862098 153865396 AGAAATCAGATCGTCTTCCC 57 153865437 153865457 CCCATAGTTCAATGAGTTGGA 58 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 2 2 2 80 12 48345338 48346499 CATTGGAAGAAATGTGCTAACC 58 48346540 48346558 TAAACGTAGGCTGCTTGGA 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 2 2 2 80 2 210443538 210444065 GCTACAACACAGGCTTTGG 60 210443476 210443495 AGGAAGCAAGTACACATCCT 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000003072 3 1 3 87 14 10897136 10897154 TTCAGCTTATGCACTGCCT 60 10897203 10902046 ATTCTGAGGACCTGTTCTCTG 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366 1 1 3 93 10 89183380 89183398 AAGTTGAGATGCTCAAGGG 57 89183455 89184385 ATCTCCTCAGGTACCTGAC 58 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 3 2 2 80 10 59753210 59753320 ACATCCAGGAGGAGTTTCTC 59 59753149 59753168 CATGTAAGCTGAAGAAGGCG 59 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 1 2 2 80 10 59574637 59574658 CAGCTCCTTTGTAGTTATGACC 59 59574699 59575110 CCACCTTCTGGGTTCTCTG 60 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000011978 3 1 3 152 3 159902589 159941151 GAGTCCTTATGACACATCCC 58 159941266 159941284 CTCCTGAAGAATCCCTTGC 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001138 1 1 3 97 20 5162966 5163746 GCCTGAGGAAATTTCAAGAGG 59 5162783 5162801 TGGGATCATCGAGGAAGTG 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001138 2 1 3 98 20 5162966 5163746 GCCTGAGGAAATTTCAAGAGG 59 5162782 5162801 TTGGGATCATCGAGGAAGTG 60 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 1 1 1 60 1 207655045 207655063 CCCAGAGATGAGAACGACC 60 207655725 207655743 TCTCACAGTTTGGGTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493 1 1 2 80 10 59804377 59805017 CTACTACAAGGGCCAGACAG 60 59805060 59805078 CCATTCTCCACCAAGAGGG 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 2 2 2 80 20 50177663 50194468 TGAACAGACAAAGGCTTTCG 59 50194507 50194529 TATAGACCTCTGATTGGACACTG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655 2 1 2 80 X 26354249 26357944 AGTAAGACAATTGCGTGAGGA 60 26354189 26354207 GCTGCCACATCATGAACAC 60 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000082267 2 1 3 92 3 176486526 176486545 GTTACAAGCAGCAGTCAGAG 59 176487425 176488637 TACTGCCAACTCCCTTCTC 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 1 3 3 80 3 147803981 147808257 ACAAGACATCAGGCTTTGTG 59 147803920 147803939 ATATCAGGGCGTACTGTGAG 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 2 2 3 199 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798793 147798811 TGTTTCGGATGGTACCCTG 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 3 2 3 83 10 89292787 89292805 AGCTGAACGTCTGTCTGTC 60 89292852 89294581 CAGCAATGCCTGACAAGAC 60 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 1 2 2 154 9 44483604 44483622 TAAATCCAGCCTGGGACAG 59 44478576 44483487 CTTTGGTGCCTTTCAGAACC 60 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000081574 1 1 3 112 8 26432873 26434072 TCAACCGAAGAACCTTGAG 57 26434143 26447683 CAGATTCACCTACTACCATAAGAG 58 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000084454 2 1 2 82 1 46169894 46169917 CAGTAACTTTCAGCAGAGTAACTC 60 46169957 46182857 TTCTGGAGTAGTTGCCTTGG 60 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 3 2 2 81 1 71434848 71434866 GAAGAAGCTTGGTCTCCAG 58 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000087615,ENSRNOT00000080174 3 3 5 69 20 4806965 4806983 TTCCCAGCCATTGCTATCC 60 4806812 4806831 CCTTGAACTGCTGATACCGA 60 NA DesignNoJunction Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 2 2 2 80 9 2205346 2205364 CACAGGTGGAAAGATGCAG 59 2205405 2209049 AACATGGTTCCTTTCCTAAGGT 60 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 2 2 2 80 2 28798503 28798524 GAGATACCTCTGAAATCGAAGG 58 28794472 28798465 ATATTATCACTGAGTCACCCAC 58 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477 1 1 2 80 16 59077973 59077991 ACCACATCAGGGATTCCAC 59 59078035 59219555 CTTCAATTTCTGCCAGCCT 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854 3 2 3 80 8 120417622 120417640 AGTGAAGAATCCCAGAAGC 57 120415397 120417580 GTGCATTCTGTTCTGATTGTC 58 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 1 3 3 80 9 51469351 51469370 TTGGCAGTACTGAAGTGGAG 60 51469412 51479678 TGTGTCTTGCAAACTTCAGC 60 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 1 2 2 80 2 39001979 39001998 AGATGGAAATCATGGTGGTG 58 38997842 39001936 TTCGATGAATCTGGGTTGG 58 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 3 1 2 95 5 157899479 157899498 CTCCTAACCTGAACCAGAGC 60 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 2 2 2 80 5 157475742 157475761 CTTGATTGGATTCAGCCTGG 59 157475804 157494440 ATCCCTTGGCAATCTTGCT 60 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000045130 3 1 3 80 7 66777513 66777534 CTGTAAACCTCCACAGTATGGA 60 66777573 66778161 GGTGCAAATAGTTGGATCTGG 59 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000016273 2 1 2 91 1 6853891 6961861 CAGATCTGATGAACACAACGA 59 6842114 6842132 CATTGATGGGTGGTTTCCC 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000080649 1 1 5 108 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420459 4420661 TCCGTAGCTGAGACTTCTG 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50705165 50705184 GGACTCAGCTAATGAATGGG 58 50705225 50706519 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000085725 3 1 2 80 8 87245464 87245483 CTCATCTTCATTCCCATCGG 58 87233008 87245424 TGTTCCAGTGTAATCAATCTCG 59 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 3 2 2 80 1 73730944 73731240 CAGTGCACAATACGTTTCTC 58 73730883 73730901 TACTGTTGGTACCACTGGT 58 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000078085 3 1 2 80 16 72133047 72133068 CAGATGTTCATAGGCTACACTG 59 72133106 72133223 TTCTGATATGGATCTGTGGGTC 60 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 3 7 8 103 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389528 4389546 GAACCCTTGAACCTGTTCC 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 2 1 1 60 1 220323967 220323986 GGCAGTATGGTTTCAATCGA 58 220324251 220324270 AAATTAAACCCTGCCATGTG 57 NA DesignNoJunction Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000079414 2 1 2 81 3 164046840 164046859 ACTACTATGGCTGTGGACAG 59 164046252 164046799 AACTCTGTGTAAGGAAGTAGGT 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 2 1 1 60 2 52171450 52171468 CTTCCTCCACAAATTGGCG 60 52171286 52171305 CTTGAGGAAATGCTCTGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 2 2 2 80 16 72018786 72019643 TCATACTTACTGGCATTTGTGG 59 72019684 72019702 ACCATAGATCGGTTTGCAC 58 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330 3 1 2 90 16 72065763 72065781 CAGAGAAAGAAGCGAAGGC 59 72067770 72077726 TTAGTGAAGGGTGCTTCCT 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 3 3 8 81 20 4482894 4482915 CAAATTCTTCCTCTATGGCCTC 59 4482957 4483254 AGCAGGAACTGGATCTGTG 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876 2 2 4 103 2 53157872 53179739 AGATTTCCGGTTTCCATGGT 60 53152536 53157808 GCATCTTAATCCTTTGCTGCT 59 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 3 2 2 80 3 161806205 161806889 ATCACTGTGTCTCTGTACAC 57 161806144 161806163 CTCCAGCTTGAAGATCAGAG 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 3 1 2 198 20 49325108 49330220 TGGAACATCACATTTCAAGC 57 49332437 49352988 GGTCAAATCTGTCATTCTGC 57 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000055839 2 1 2 110 5 159569695 159574309 TCAATGAGAGGGACACAGAG 59 159569519 159569537 CTCTCAGCATGTCGTTCAC 59 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494 3 1 3 132 20 155176 155194 TTTCTTGGACCTTTGGCTG 58 154540 154905 CATAAACCATCACTGGAGCAG 59 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 1 3 3 80 5 59621207 59621225 ACATTACCTCCGTCAGCTC 59 59620030 59621166 TGGATAAGGTACTCCAAAGGAC 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 3 2 3 80 3 80718516 80718535 CCTCCTCTTCTTCCTCAGAC 59 80718577 80732041 CACCATTGTCCTCAAAGTCC 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577 1 1 2 80 5 157665474 157690581 GGTCTGAAATGAACTCTAGCG 59 157690623 157690641 TCTCAATCTGCTGTGGAGG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000073240 3 1 4 81 16 81666026 81666045 CTAAGAGGGCGATCAAATGG 59 81666089 81676860 AATGTCCGGTTCAAGTCTG 58 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 1 1 1 60 3 176441410 176441428 AAGAATCCAGGCCTACACC 59 176441535 176441553 ATCTTCCTGTTCTTCCCGT 58 NA DesignNoJunction Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547 2 1 2 80 3 66827913 66827938 ATTCTGGCATCTTTCTTTCCC 59 66827853 66827872 TGACTTCCGATCACAAAGTG 58 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000091265 1 1 2 108 3 80855393 80875680 CAGACACAGAAAGCCATCAC 59 80855304 80855322 CCACAGTACTCCGGATCTG 59 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000089265 3 1 2 88 16 74887643 74887661 AGACGAGAAAGATCCTCCC 58 74887711 74906123 TAGATAAGATCTGGGACCTCC 58 NA Rattus norvegicus 81 AY172581.10 ENSRNOG00000031333 ENSRNOT00000045310 1 1 1 60 MT 5229 5251 GCCTTAAGGTGATTATCATGTCG 60 5191 5213 TAGTAGAGGAGATTCTCTACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041777 ENSRNOT00000063530 2 1 1 60 5 99616213 99616232 TCAAGCTAAACAGAGTCAGG 57 99616172 99616190 CAAGTATTCCCAGGCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000053278 ENSRNOT00000079766 3 1 1 60 5 5464376 5464395 GTAAATGGTCTTCTGCAACC 57 5464414 5464436 CTCCTGTATGTGTTAGTACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpkow ENSRNOG00000022939 ENSRNOT00000039000 2 1 1 80 X 15640725 15640746 TGACAATTGAAGATGTCCTGAG 59 15639340 15640689 CTTCTTTCACACCTTCTAGAACTC 59 Novel Rattus norvegicus 81 AABR07038269.1 ENSRNOG00000050081 ENSRNOT00000074439 1 1 1 60 X 44158122 44158140 AGTTGAGCCTTATGTGACC 57 44158163 44158182 CAAGATGAGTTCTCGGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 2 1 1 60 2 115231944 115231965 TTCTGTTCCTGAGCATCGT 59 115231902 115231920 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052662 ENSRNOT00000080827 3 1 1 60 2 252246381 252246405 ATAGAGAAGATTAGTATGGTCCCTG 59 252246345 252246366 ATGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054911 ENSRNOT00000077732 2 1 1 61 8 25522798 25522817 CTTGTCGGTAGGTGGTAGAG 59 25522839 25522859 ATACAGCAGTTCATAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058108 ENSRNOT00000077472 3 1 1 60 2 80610652 80610671 TTCGGTCAAGGGTATACGAG 59 80610611 80610630 TTGAGAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044629 ENSRNOT00000069896 1 1 1 60 11 53453848 53453866 TCGGAAGCTAATAAGCAGG 57 53453806 53453824 GTCCTTTACAACCCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056936 ENSRNOT00000082328 2 1 1 60 2 221706031 221706049 GCTCTCAAGATTAGCACCC 58 221705989 221706007 GTTGGCCTTGAACTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057260 ENSRNOT00000088640 3 1 1 61 8 122644845 122644863 AGAGATTAGCATGGCTCCT 58 122644802 122644820 ATGGATACTGCCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055419 ENSRNOT00000091343 1 1 1 60 11 75965159 75965178 CTTAAGCTGACTGGTCAAGG 58 75965198 75965219 GAGATAGTTTGGAGGTTCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053246 ENSRNOT00000089032 1 1 1 60 11 26461983 26462002 GAGGCTATGTCTACCCTCAG 59 26462022 26462043 TGTTAGGCTAGTAGTCATTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060465 ENSRNOT00000079120 3 1 1 60 5 152997490 152997511 ACAGAGAAGATGATAGTCTTGG 57 152997530 152997550 TACAGCAAGCTTCACTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060433 ENSRNOT00000082094 3 1 1 62 11 72398330 72398348 CAACTTTCCCTTCCCTCAG 58 72398286 72398305 CTCAGACACTGTGTCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 3 1 1 60 16 7099154 7099175 TGAAGCAATGATGACAGATTGG 59 7099115 7099135 GTTGGATTGAACAAACTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056877 ENSRNOT00000084423 1 1 1 60 8 9365288 9365306 GATCTGGCTGTGACATCTG 58 9365330 9365348 TAACCAGATCACCCGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070060.1 ENSRNOG00000052582 ENSRNOT00000080059 1 1 1 91 8 47036267 47036575 AAAGCAAAGACCAAGCTGC 60 47036630 47036648 ATGTAGATCTTCTGGCGGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056215 ENSRNOT00000089069 3 1 1 60 11 44762578 44762596 AAGTCAGAAGGTGGCAGAG 59 44762618 44762638 TCCATAAGTCAGAATGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058634 ENSRNOT00000087436 2 1 1 60 8 61160885 61160905 GAACAATTCAGTGAGAGCAGG 59 61160845 61160866 GGATGATTTACAGATTCGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051587 ENSRNOT00000080212 3 1 1 66 16 10439145 10439163 ACATCTGCGTCAGTAGGTG 60 10439192 10439211 TTCACAGGTTAGAACACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045755 ENSRNOT00000071647 3 1 1 62 11 89141688 89141707 TACTACCCTGAAGAAGCCTG 59 89141645 89141663 GTAACTAGGCTGACCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048075.1 ENSRNOG00000046591 ENSRNOT00000072391 3 1 1 60 5 60516481 60516499 TCTGTGAGTTCAAGGCCAG 60 60516522 60516541 CTTATACTCCTGGCTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 3 1 1 62 5 59494918 59494936 GTAGCATTCCTCTGTGGGA 59 59494959 59494980 CTTTCTATGTAGCTAAGAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049764.1 ENSRNOG00000041600 ENSRNOT00000063353 1 1 1 60 5 136907960 136907979 GACATTGGAAGAAGGAAGGT 58 136908002 136908020 TTACTCAGTCCCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058307 ENSRNOT00000087587 3 1 1 61 2 223128686 223128708 CAGTACAGAGAATTATCATGGCC 59 223128726 223128747 ATGGAAGCTTCATGAATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061086 ENSRNOT00000081889 2 1 1 66 2 243846077 243846097 CTCATGTGGGATCACATACAC 59 243846125 243846143 ATCCTTCCACAAGGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057730 ENSRNOT00000086533 2 1 1 70 2 237613098 237613116 GCTTCAGCAGCACATACAC 60 237613046 237613064 GTAATCCTAGTGCAGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055120 ENSRNOT00000084067 1 1 1 60 2 150482270 150482291 GATAGGAGAAGATTAGCATGGC 59 150482231 150482250 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059958 ENSRNOT00000090650 1 1 1 60 5 127092241 127092262 CTGAGTAGAAGACTGTCAAGAG 58 127092283 127092301 CCTTTGGAGGTTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060942 ENSRNOT00000083562 3 1 1 60 16 34695232 34695256 GTGTTGTTCTTATATCAGTCAGAGG 59 34695196 34695216 CAAGCTAGGATGAACCAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056250 ENSRNOT00000078902 2 1 1 60 16 51239307 51239329 GGAACGATACAGAGAAGATTAGC 59 51239349 51239367 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053500 ENSRNOT00000091501 3 1 1 69 5 13087032 13087050 TGTATGGGCATCTGTGCTC 60 13086981 13087002 TTGAATTTCTATAGGGCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061140 ENSRNOT00000077299 3 1 1 60 16 37035382 37035401 GCTGGAACATCTATCACCTC 58 37035341 37035360 CCTAGCCAGACAAATCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055926 ENSRNOT00000090491 3 1 1 60 X 29175801 29175819 TGGCTGCAAACAGTATCCT 59 29175841 29175861 CCAAGTTCTCCTAGAGAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 3 1 1 86 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199324 35199343 CAAACAGTGGTGAGATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061435 ENSRNOT00000085580 1 1 1 60 2 176276198 176276219 GACTATCTTCCCAGAATACAGG 58 176276159 176276178 GACGCAGCAACTCATATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053793 ENSRNOT00000088146 3 1 1 62 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874232 TATTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061353 ENSRNOT00000089730 2 1 1 62 8 21823124 21823144 GTGATCAGGATGTGACATCTG 59 21823168 21823186 AAGCTAGACCAGCCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059888 ENSRNOT00000079145 3 1 1 60 8 91715737 91715755 ATTCAGGGAACTTGACTGC 58 91715777 91715797 AGGGAGAACTCTAACTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025481.1 ENSRNOG00000050139 ENSRNOT00000073719 2 1 1 78 16 39029720 39029738 CAGCAATGAATGCTTCAGG 57 39029660 39029680 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054717 ENSRNOT00000082640 2 1 1 60 16 23437271 23437291 GTCAATAAGTGGCAAAGAGGA 58 23437231 23437251 GATGTTCAAAGGTCCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057320 ENSRNOT00000092062 1 1 1 60 1 55623887 55623909 CAGATTGAACTCCTGTTCTACAC 59 55623849 55623868 TTTAGGCCAATCAAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045798 ENSRNOT00000073711 3 1 1 67 16 5069306 5069329 CCTGAACATATCCAATCTCATCTG 59 5069262 5069280 CATCCAAATGCTAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057503 ENSRNOT00000078702 1 1 1 61 16 9448626 9448644 ACAGGCTCTGTCTACACTC 59 9448666 9448687 TGTTAGGCTACTAATCCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060581 ENSRNOT00000084808 2 1 1 60 17 21251937 21251958 CTACCATTAGAAGGGTACAGAG 57 21251898 21251916 ATTTGCAGGTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061206 ENSRNOT00000082810 3 1 1 60 6 87210124 87210142 AGTAGGTGGCAGAAAGGAG 59 87210082 87210103 CAGATGTTCATTGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA24 ENSRNOG00000061126 ENSRNOT00000090845 1 1 1 60 X 62641893 62641914 AATGTCCTGTAGTAGCTTTCTG 58 62641854 62641872 TAGAGGTACCATCCACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072362.1 ENSRNOG00000052980 ENSRNOT00000071557 2 1 1 82 14 2533726 2534553 CGGGACCACAGAAATAGCA 60 2534599 2534617 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057374 ENSRNOT00000089691 2 1 1 60 X 3465654 3465674 TTGATTTGGAGGCACATACAC 59 3465614 3465635 TTCTAGAGGCCATGCTAATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.2 ENSRNOG00000051967 ENSRNOT00000082154 1 1 1 75 9 34389365 34389383 AAATGTGATCGCTTCTCGG 58 34389308 34389332 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD20 ENSRNOG00000060216 ENSRNOT00000081260 3 1 1 76 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370601 93370624 GGATCAGAACTTGACTATCTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021704.1 ENSRNOG00000058096 ENSRNOT00000082869 1 1 1 60 13 86670889 86670907 TCACAGACCAGAGTTTGGA 58 86667406 86667425 ATTCTGTGGCAGTTTAAAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07003935.2 ENSRNOG00000046102 ENSRNOT00000075611 2 1 1 60 1 121202909 121202927 TGATCAGTCAGGCTACTGG 59 121202867 121202885 GGCTTTGGTTATACCCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 3 1 1 60 4 126592902 126592922 AATACAGTTAGAGGCCTTTGC 58 126592943 126592962 CACACCATCAGACTTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056965 ENSRNOT00000090251 1 1 1 60 9 17079509 17079529 GGTACTGAGAAGATTAGCTGG 58 17079549 17079569 CCACTGAGTTATGAATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059638 ENSRNOT00000090904 1 1 1 60 3 139671390 139671410 GATAGGCTTGATTCTGCTGAC 59 139671350 139671368 ATGAATGCAGAGTGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 3 1 1 61 3 58127168 58127187 CTCACTTCAGCTGCAAACAG 60 58127205 58127229 CTTGTACAAAGGTCATACTAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053837 ENSRNOT00000083607 2 1 1 60 4 128865873 128865896 GAATGATACAGAGATTAGCATGGC 60 128865836 128865855 AACACTTCACAGATTTGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054171 ENSRNOT00000080225 3 1 1 77 9 3389412 3389432 ATACCATGATCACTAAGGTGG 57 3389355 3389373 GAAATTCCAGGGTCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059854 ENSRNOT00000086430 2 1 1 60 2 188074580 188074598 ATGGTGTGGTCCTTCTGTG 60 188074619 188074640 CTACAGTTTATTCTGGCATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044968 ENSRNOT00000070235 1 1 1 60 X 11124409 11124433 TACTAACCTGAATATCCCTGATCTC 59 11124373 11124391 CTCACTAGGCTCAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060759 ENSRNOT00000081187 1 1 1 60 X 40583960 40583979 TGTGTCAATAGGTGACAGAG 57 40584001 40584020 GCATAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 3 1 1 67 18 25364163 25364186 AAGGGAAATCCTTTCAAGGAG 58 25364116 25364137 CTGGTGCATCAGAAGATAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031734.2 ENSRNOG00000042376 ENSRNOT00000065447 3 1 1 60 18 30838422 30838443 ATATCAGTACTCTTCCTCCTGG 58 30838464 30838483 CTGATCTGGAGGAGTGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054241 ENSRNOT00000079402 3 1 1 60 X 133363713 133363732 TATACGAGTAGCTGCACTCC 59 133363672 133363691 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053976 ENSRNOT00000091887 3 1 1 60 15 11045037 11045059 CATCAATAGGTGACAGAAAGGAG 59 11045078 11045097 GTTCATGGGTTGGAACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 1 1 1 60 1 149718193 149718212 TTCAGATGACACTGACTTCC 57 149718234 149718254 TTGAAAGTATGCACACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056682 ENSRNOT00000080329 2 1 1 61 16 41951320 41951343 GAAGAATACAGAGATTAGCACAGC 60 41951282 41951301 GAACGCTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061287 ENSRNOT00000080889 2 1 1 60 15 88787236 88787254 ACTGATGTGTCACATGAGC 58 88787194 88787213 CTGAGCATAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000061340 ENSRNOT00000078726 1 1 1 60 16 9730863 9730884 TAAAGCATTACTACCTCTGCCT 59 9730824 9730842 GTTTGAAGCCAAGCATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119111.1 ENSRNOG00000055667 ENSRNOT00000086031 1 1 1 80 1 254513151 254513175 CTCCCAGAAGGAGAAATGGT 59 254512204 254512225 AAGAGGGAAGAATTGTCTTCGT 60 Novel Rattus norvegicus 81 SNORD43 ENSRNOG00000052611 ENSRNOT00000077507 2 1 1 61 7 121302276 121302297 CAAATGATGAATCCTTTGACGG 58 121302236 121302257 CAGATCAGAACATGACAATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058875 ENSRNOT00000090435 3 1 1 64 6 100454194 100454212 CAGGCATACTGAAACTGGA 57 100454240 100454258 TGTTCATGTCACCCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 1 1 1 60 6 29932874 29932895 CTTAACAACTAAGCAGGGTCAG 59 29932915 29932934 CTGTTTGATGTGGATCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060560 ENSRNOT00000080705 3 1 1 60 16 49592771 49592792 TGACTGTTCCTTAGCATTTCCT 60 49592811 49592831 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051820 ENSRNOT00000081404 2 1 1 60 X 43276854 43276876 CCTTCAAGTATAGCTTCTCTGTC 59 43276816 43276835 CATAGCCTCTTTCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041705 ENSRNOT00000063458 2 1 1 60 7 67029070 67029091 ACACATTTGATCCTATCTGAGC 58 67029031 67029049 TCCAAGAACCAATCAGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053293 ENSRNOT00000078095 1 1 1 62 1 239939936 239939954 ATGTTTGTCAGTTGGCAGC 59 239939892 239939910 CATGGGTCAGAATGCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056049 ENSRNOT00000077522 2 1 1 60 6 133824895 133824913 ATGATGAGATCTGGTGGCG 60 133824934 133824955 TCAGATGTCTGGATACTTGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066871.3 ENSRNOG00000061718 ENSRNOT00000085293 2 1 1 113 9 20528638 20528659 ACATACGCACATACATTCACAC 60 20528546 20528566 GTGAATGTATGTGCGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026984.2 ENSRNOG00000055099 ENSRNOT00000085437 2 1 1 81 17 8435406 8435426 TGATCAGTTGGAGCAAAGC 59 8435343 8435362 AATAAGAAGTGACGTGTGGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050589 ENSRNOT00000073815 3 1 1 61 12 1512877 1512895 CCCGATCTCGTCTGATCTC 59 1512834 1512853 CTCCCATCCACGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056091 ENSRNOT00000085064 1 1 1 60 X 74936893 74936912 AGGCTATGTCTGTCTATGCT 58 74936852 74936875 TAGGCTACTAACCATTCAGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059000 ENSRNOT00000091939 1 1 1 60 X 15590847 15590865 CAAATGCAGTGTCCTTGGG 59 15590884 15590907 GTCCCTTAGGGTAACTCATATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051428 ENSRNOT00000088706 2 1 1 83 17 71306470 71306489 AATTTAACAGTGGTGTGCAC 57 71306535 71306553 AACCTCCCAGTCTACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059533 ENSRNOT00000078169 1 1 1 60 8 117815368 117815388 GACCTAGGAGTTGGAATAGGA 58 117815328 117815348 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060666 ENSRNOT00000091580 2 1 1 60 10 88545049 88545067 GAGTTGAACACCAACTGCA 59 88545091 88545109 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 1 1 1 60 1 189345546 189345566 CTAGATGACTGGACAGGAGAG 59 189345506 189345524 TTCTAAGCTCTGGTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053594 ENSRNOT00000089558 1 1 1 60 9 41046445 41046465 AGAGGCAGAATAAACCTACAG 57 41046405 41046424 TCTCCCTATTCACCCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053594 ENSRNOT00000089558 3 1 1 60 9 41046445 41046466 AAGAGGCAGAATAAACCTACAG 58 41046406 41046426 CTCCCTATTCACCCTACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061534 ENSRNOT00000086394 2 1 1 60 2 217707297 217707317 TGGCTTCCATGTAACATATGC 59 217707257 217707279 TCAGAACAGTGATCCTACTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059264 ENSRNOT00000087292 2 1 1 60 8 32413547 32413568 ATACAGAGAAGATTAGCATGGC 58 32413508 32413527 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050574 ENSRNOT00000072609 1 1 1 60 10 105278130 105278149 CTTCCATCTCTGAATGCTCC 58 105278089 105278107 CTAACCCTGCCTAGCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050574 ENSRNOT00000072609 2 1 1 60 10 105278088 105278106 GAAGCTAGGCAGGGTTAGG 60 105278046 105278066 CCCAGTAGTCTCAGACAATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052012 ENSRNOT00000079858 2 1 1 60 9 71697709 71697727 CTGATTCCTGCTCCTTCTC 57 71697667 71697686 CCCACTGGTACAGATATGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053630 ENSRNOT00000091097 1 1 1 60 8 21492553 21492577 ATATCGAGAAGATTAGCATAGTCCC 60 21492593 21492613 GGAATGTGTCAAGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016418.1 ENSRNOG00000051014 ENSRNOT00000071355 3 1 1 115 14 99787858 99787876 TTCTGACTGGTGTGAGGTG 59 99787759 99787779 ATTCTCAGCTGAGGGATCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056743 ENSRNOT00000087879 3 1 1 69 2 207073722 207073743 GCAGCACATATGGTTAAATTCG 59 207073674 207073692 TTTGTGTCATCCTTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 1 1 2 89 8 85605739 85605759 CACATTTACGGATTGGAAGCT 59 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057090 ENSRNOT00000078811 2 1 1 60 4 157485708 157485726 GTGTTTCCTTCAGCAGCAC 60 157485748 157485768 GACCATGCTAATCTTCTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.3 ENSRNOG00000057463 ENSRNOT00000071415 3 1 1 80 2 52156635 52156655 AAGAATGCAGATCCCATGC 58 52156699 52156717 GTGTCTGCTTTGATGTGGA 58 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 1 1 1 60 6 133825651 133825670 CCAATGATGAGATCTGGTGG 58 133825690 133825711 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035064.1 ENSRNOG00000051390 ENSRNOT00000074496 1 1 1 93 12 3783726 3783745 CCTAAAGAAAGAGATGCCCA 57 3783798 3783823 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 AABR07036974.1 ENSRNOG00000030819 ENSRNOT00000047059 2 1 1 60 X 8646278 8646296 TGGGAGCTATGATCCACAG 59 8646318 8646338 AGAGTCATTGCCATAATAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027753.2 ENSRNOG00000047776 ENSRNOT00000049785 1 1 1 60 17 43808867 43808886 GTTCGTGAACGACATCTTCG 60 43808912 43808930 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060113 ENSRNOT00000084556 3 1 1 60 2 96279771 96279792 GTCAAGGGTATATGAGTAGCTG 58 96279811 96279831 TGGAGTTAGAGCTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052327 ENSRNOT00000081092 2 1 1 61 3 150800257 150800280 GGCTAAGATCAAGTGTAGTATCTG 59 150800299 150800318 TGCATGTGTAAATGTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063314.1 ENSRNOG00000061354 ENSRNOT00000087575 3 1 1 95 6 28236835 28236854 GCTGTCACATTCACACTCAG 59 28236912 28236931 CAAGACAACGGAGCAATGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058095 ENSRNOT00000086319 3 1 1 67 4 116894071 116894089 TGTAGGTGTGGTGCTATCC 59 116894022 116894042 ACACTGTAGACATAGCTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061125 ENSRNOT00000088230 2 1 1 60 4 177070708 177070726 TCGGTCAAGGGTATACGAG 58 177070666 177070685 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052849 ENSRNOT00000086526 2 1 1 61 4 102979220 102979241 TATCAGTGGTGTATCACATGTG 58 102979180 102979199 GGGCAGACATAGTGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051400 ENSRNOT00000081216 2 1 1 60 1 31443476 31443496 AATTCTAAGAGTGGTGCCTCC 60 31443518 31443536 AACTCACCTCTCCACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035561.2 ENSRNOG00000051906 ENSRNOT00000081310 1 1 1 81 12 19680889 19680985 CATAGCTCAGATCCAGGACTC 60 19681028 19681046 CTGAGGTTCCCAAGATCCC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000060441 ENSRNOT00000085071 3 1 1 67 2 198623817 198623835 TTATCCATTGCACTCCGGA 59 198623866 198623884 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058504 ENSRNOT00000091658 3 1 1 61 10 57329904 57329925 AACAATGCAGAGATTAGCATGG 60 57329945 57329965 TGGAAGCTGCATGAATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053414 ENSRNOT00000089256 2 1 1 60 4 168916192 168916212 GTTGTCATTTGCACCAGTAGG 60 168916230 168916252 AGAACACTGAGGATAGACATAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052355 ENSRNOT00000089150 1 1 1 60 7 18641155 18641174 TTCGGTCAAGGGTATACGAG 59 18641114 18641132 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013147.1 ENSRNOG00000053852 ENSRNOT00000077434 2 1 1 62 2 224712888 224712906 GATGTTGCTTCTGTCTCCT 57 224712931 224712950 GGAAGACTGATGTTCATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030777.1 ENSRNOG00000059694 ENSRNOT00000091877 2 1 1 60 10 104000525 104000543 TCTGTCGGTGTTGTTATGC 58 104000483 104000502 TATTCGTGGTGTCTGGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000087865 1 1 2 84 2 52569789 52609297 TCCAATGGGTTGAGAGCTG 60 52569723 52569741 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AABR07039210.1 ENSRNOG00000057427 ENSRNOT00000079834 1 1 1 73 X 71961312 71961332 CTAAGATTCTGGTTCCAGGG 57 71961365 71961386 TGTCTTCCTTTATGGACTACTG 57 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000052797 ENSRNOT00000089020 3 1 1 61 8 95543709 95543727 CACTGTGTCACATGTGCAC 60 95543666 95543686 CACTGAGCATAAACAAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060238 ENSRNOT00000078722 3 1 1 62 8 126487477 126487496 CATGCCAACCAGAAGTACAC 59 126487434 126487455 CAAATGGTTGAGTTATCCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072773.1 ENSRNOG00000041322 ENSRNOT00000063075 3 1 1 60 2 207559730 207559748 GAGGCTTAAAGCCCTAAGC 58 207559688 207559706 CCAGCTTAGAAAGCAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053525 ENSRNOT00000080130 3 1 1 60 2 224903686 224903705 TGTTCCACTGCTAGAACCTC 60 224903728 224903746 AGAAACACCATGACCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000053220 ENSRNOT00000083113 1 1 1 60 2 153754555 153754575 ACTGTCTGACACAATTTGAGC 59 153754515 153754534 AGAGAACACCGGAATAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016779.1 ENSRNOG00000052764 ENSRNOT00000083199 2 1 1 77 14 114047342 114047365 GAGTGCAAGATAGAGTATGAAGAC 59 114029243 114029261 CTTGATTTCATGCATCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004756.1 ENSRNOG00000058731 ENSRNOT00000080976 3 1 1 62 1 154627182 154627203 AAGATCAAGTGTAGAAAGCGTG 59 154627226 154627244 GGAAAGCATGGAGTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027009.1 ENSRNOG00000041433 ENSRNOT00000063186 3 1 1 60 17 10572352 10572370 CTGCTCATTTCCCTATCCC 57 10572310 10572328 TACTGAGTGCTTACCAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 1 1 1 60 2 48263852 48263876 GGTGACAATCTAGCTGTAATATCTG 59 48263893 48263912 GATCATCTGGAGAAACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 2 1 1 60 2 48263860 48263881 TCTAGCTGTAATATCTGTCACC 57 48263902 48263920 AATCGCCAGATCATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053757 ENSRNOT00000082756 1 1 1 60 3 122805523 122805543 ATAAACTACCCTGTGTACACC 57 122805564 122805583 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500473 ENSRNOG00000046529 ENSRNOT00000075994 3 1 1 81 5 77341446 77341467 AGTGCAGGGAACTATATTTGGT 60 77340698 77341408 AATGTATTCCCTCCGTCATACTC 60 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970,ENSRNOT00000078786 3 2 4 89 19 17397469 17399494 GATATAGAGGATGACGTTTCTTCC 59 17396114 17396132 AGGCCAGTACACTTTGTCC 60 Novel Rattus norvegicus 81 AABR07063601.1 ENSRNOG00000051657 ENSRNOT00000077176 2 1 1 83 6 36889042 36889064 ACAAGGACACTCATCGGTG 60 36888977 36888996 CTAGAAAGGAAGGTTTGCGG 59 Novel Rattus norvegicus 81 AC131024.1 ENSRNOG00000058001 ENSRNOT00000082630 3 1 1 80 3 170299189 170299279 ACAGCCTACACTACGTACAC 59 170299318 170299340 GTAGGCTGTAGTGTAGTATAGGC 60 Novel Rattus norvegicus 81 Rab37 ENSRNOG00000059793 ENSRNOT00000086469 3 1 1 80 10 103710037 103710055 CCCTTCATGGAGACCAGTG 60 103710098 103710240 GCGATATTTCAGCTCCTTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054556 ENSRNOT00000082827 3 1 1 60 3 27527426 27527445 CTATGTCACATGTGCGTCAG 59 27527466 27527486 AACACAAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041999 ENSRNOT00000063752 3 1 1 60 1 141753526 141753544 TTCCTCTAGTCTCGGAAGC 58 141753484 141753504 GTTTACTCCCATCTTTGGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051,ENSRNOT00000090573 2 2 2 80 15 36878958 36879185 CATTGTACACAGGCATCCC 59 36879226 36879247 CTTCTGAAGCTCTGTAGTTGAC 59 Novel Rattus norvegicus 81 AABR07004960.1 ENSRNOG00000053648 ENSRNOT00000090018 1 1 1 60 1 172822808 172822829 GAAACATTTATCCTTGTGGCTG 58 172822849 172822868 ACCCAAATGTCACTACAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009397.1 ENSRNOG00000011827 ENSRNOT00000015746 3 1 1 60 2 96032193 96032212 ATGGCTATGTTGATGCTACC 58 96032152 96032172 GTGAATTGCAGACATTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055989 ENSRNOT00000083142 1 1 1 64 10 58429084 58429102 GTGTCAGTAGGTGGCAGAG 60 58429038 58429062 GATGTTTGTAGGTCAGAATAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056155 ENSRNOT00000081932 2 1 1 60 2 68252026 68252047 GATAGAACCTCCAAACAAGCTC 59 68252066 68252086 TCTCAAATCTAGAGCAACTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057603 ENSRNOT00000090692 3 1 1 60 1 82084760 82084778 AGAAGATTAGCATGGCCTC 57 82084801 82084820 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043,ENSRNOT00000092119 3 2 2 80 10 4491664 4491684 TATTGCTGATGAACGAATCCG 59 4491722 4491827 GATACTGGAACTTTCTTCCTCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059256 ENSRNOT00000083460 1 1 1 60 2 34483460 34483478 GAGAAGATTAGCATGGCCC 58 34483418 34483436 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000055743 ENSRNOT00000086670 2 1 1 60 10 74765418 74765441 CGTTACTAGAGAAGTTTCTCTGAC 59 74765460 74765478 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123251.1 ENSRNOG00000039721 ENSRNOT00000060915 3 1 1 64 4 15698003 15698021 ACATGGAAACAACCCTGGA 59 15697955 15697973 GGTGAAGCTTGCATCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1407.2 ENSRNOG00000055573 ENSRNOT00000082729 3 1 1 83 7 142890324 142890806 TGCGACTAAAGGAAGGGAG 59 142890259 142890278 GTTTGACCTGAGCATTCTGG 59 Novel Rattus norvegicus 81 uc_338 ENSRNOG00000057577 ENSRNOT00000089803 2 1 1 72 3 25202935 25202954 TACAGTCCAGGTACATAGGG 58 25202882 25202900 TTTAGGTAGATGGGCGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058811 ENSRNOT00000080131 2 1 1 61 17 70657695 70657716 AACGATACAGAGATTAGCATGG 58 70657736 70657756 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044645 ENSRNOT00000069912 3 1 1 61 2 253549413 253549431 GAATGTGCCAGATCTTGCC 59 253549370 253549389 TCCATTACAAACCATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039471.1 ENSRNOG00000047231 ENSRNOT00000075097 1 1 1 83 X 77654997 77655015 TTCCTTTCTTCAGGTTGCC 58 77654930 77654953 ATTATCATCTCGTACATCCCAG 57 Novel Rattus norvegicus 81 AABR07057675.1 ENSRNOG00000054487 ENSRNOT00000088893 1 1 1 81 7 83701187 83701205 TCCAACACAAGCCTCTAGG 59 83682332 83701144 CAAATCCATCGTTTCCTTTGC 59 Novel Rattus norvegicus 81 AABR07069011.1 ENSRNOG00000055895 ENSRNOT00000089124 2 1 1 80 8 5201991 5202011 CACCACTAACATTCGAAAGGG 59 5201727 5201949 AAAGGTCACCATGGTCTCC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060346 ENSRNOT00000088659 2 1 1 60 14 112298875 112298895 TTACTCAGTAAATGGCTACCC 57 112298835 112298855 TACATCTGTTCAGACAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053573 ENSRNOT00000078335 3 1 1 65 17 51029034 51029057 GATTAACTAGGTAGATCTGACCCT 59 51029081 51029099 TTACAGCTTCGGGAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000052898 ENSRNOT00000083117 2 1 1 60 14 21268222 21268241 CTTTGCTGGAGCATAACTGG 59 21268181 21268201 TAGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016975.1 ENSRNOG00000053595 ENSRNOT00000077659 2 1 1 80 15 5652368 5652386 TTGTGAACTGCAAGTTCCC 59 5652304 5652329 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 AABR07029696.1 ENSRNOG00000061797 ENSRNOT00000078935 1 1 1 80 10 44947130 44947148 CAACATCACACTGGTCCAC 59 44947067 44947088 ATCATGTCGATACTGAGGAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053823 ENSRNOT00000078198 2 1 1 61 2 244937718 244937736 GAGAAGATTAGCATGGCCC 58 244937760 244937779 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030378.1 ENSRNOG00000060404 ENSRNOT00000080001 1 1 1 110 10 83313350 83313369 AATGTCCCAATCTCCCACC 59 83313441 83313462 CAACAGACAGGTTTAATCTCCA 58 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000053824 ENSRNOT00000087965 1 1 1 60 17 15400576 15400594 TGCCAGTACAGTTCTCCAG 59 15400534 15400554 CCCATGCATAAATCAAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 3 2 2 86 4 114818608 114818768 TATGAACTCTGGTGGTTCTG 57 114818541 114818559 GAGTTTAGCTCTTCGGTGG 58 Novel Rattus norvegicus 81 U3 ENSRNOG00000052744 ENSRNOT00000086241 1 1 1 60 2 146467031 146467052 TTTGCCATTGATGATCGTTCTC 60 146467073 146467091 ACTCAGACTGTGTTCCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017197.1 ENSRNOG00000048492 ENSRNOT00000070931 1 1 1 113 15 17096229 17096249 TGGACCAGAGAAACACCTC 59 17096134 17096158 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000057361 ENSRNOT00000085324 2 1 1 60 14 97920927 97920945 CATGGGATCTCCAACTGCA 60 97920969 97920987 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.2 ENSRNOG00000059027 ENSRNOT00000082961 3 1 1 84 1 167673268 167673286 CCTCCACATCAAACCAGAC 58 167673334 167673354 CAGGAAATTTCCAGTGCCC 59 Novel Rattus norvegicus 81 SCARNA3 ENSRNOG00000052521 ENSRNOT00000086149 3 1 1 62 1 53236728 53236748 CCAGCCATGTAGACAAATGAG 59 53236686 53236704 TTTATGTGGGACTGTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000058033 ENSRNOT00000081251 2 1 1 64 12 9997686 9997704 TCATTGGCCATTCAAGTGG 58 9997640 9997661 CAAACACTTAAGTTTGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.2 ENSRNOG00000056830 ENSRNOT00000086338 2 1 1 60 4 103331062 103331080 CAGTAGAGTGAGGGCTGAG 59 103331020 103331039 AGGATACTCTCGAACTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055396 ENSRNOT00000078801 2 1 1 60 14 43145702 43145722 ATACAGAGAAGGTTAGCATGG 57 43145743 43145762 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056287 ENSRNOT00000080374 1 1 1 60 14 36664777 36664796 AAGGGTAAAGGAAGTCTCCA 58 36664736 36664754 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060672 ENSRNOT00000081361 3 1 1 60 14 113503205 113503225 GTTACATGTACGTCAGTTGGT 58 113503165 113503183 CAGAACACTGAGCATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115159.1 ENSRNOG00000040383 ENSRNOT00000062136 1 1 1 60 10 35858130 35858150 CGTATCCATCTTTGAGGTCAC 59 35858090 35858109 AACTTGCAAGGAATGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061336.3 ENSRNOG00000059023 ENSRNOT00000083216 2 1 1 61 4 116935985 116936003 CAGTTTCTGGGCTGAAGTC 59 116935942 116935962 GACTGCAGAAGTTGAATTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000055902 ENSRNOT00000085824 3 1 1 60 14 17380809 17380828 GTATGAAGCACAAGGAGAGG 58 17380768 17380786 ACAGGTACCAAAGACATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063516.1 ENSRNOG00000060052 ENSRNOT00000083144 2 1 1 99 6 33080627 33088533 GTACAGCAGTTGTTGTAAATGG 58 33080549 33080570 GAATGTCCTTAGGAAGACACTC 58 Novel InUTR Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 1 1 1 65 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814014 165814032 TACATCACTGTGAGGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054619 ENSRNOT00000079500 1 1 1 60 10 33892523 33892541 ATAGATGTGGTTGCTCTGC 58 33892560 33892583 CACTGATCATAGACATAACCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0046.5 ENSRNOG00000059825 ENSRNOT00000086128 3 1 1 60 20 2489398 2489418 GTATTACCCATCACCTAGCAC 58 2489358 2489382 GACACTGAAGTAGATTAAATGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055517 ENSRNOT00000087941 1 1 1 60 1 56863003 56863025 GACTACAGAAAGTCTAGAACAGG 58 56862965 56862984 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060227 ENSRNOT00000087216 1 1 1 60 1 53435023 53435042 CTGGAGTGGATGATCCTGAG 59 53434982 53435000 AAATTTGCGTGTCATCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0046.4 ENSRNOG00000057666 ENSRNOT00000086191 3 1 1 60 20 2492375 2492396 GATCTGGAGAACTTCTGAACAC 59 2492336 2492358 GAAGCTAGTACAAAGTTTCTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059438 ENSRNOT00000087823 3 1 1 60 1 84992331 84992352 AATTAAAGGGTTCAACCTCTCC 58 84992292 84992310 CTTTCCTCTTCCACGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036145 ENSRNOT00000054268 3 1 1 60 14 89011312 89011330 CCCGATCTCGTCTGATCTC 59 89011354 89011372 TCCCAGCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061065 ENSRNOT00000086781 2 1 1 60 14 7685757 7685775 GGGTTCGTCTGTCTAGGTC 59 7685715 7685733 AGAAAGGCCAGAGTCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118802.1 ENSRNOG00000057672 ENSRNOT00000089658 1 1 1 80 13 113764013 113764032 TATTTGTCCTCTGCTTTGGT 57 113764075 113764095 GAGCCAAGAATTATTGCCG 57 Novel Rattus norvegicus 81 AABR07015814.1 ENSRNOG00000043857 ENSRNOT00000069124 3 1 1 79 14 78549354 78549372 CCTTGTTGGAGGAAGTGTG 58 78549415 78549433 AAGCGAGAGTGACACTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096353.1 ENSRNOG00000050136 ENSRNOT00000073324 2 1 1 60 1 256453689 256453707 GCCAAAGCCTTAGACAAGC 60 256453731 256453749 CCTCATCACAGTTGGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005838.2 ENSRNOG00000054087 ENSRNOT00000089033 2 1 1 61 1 202829580 202829598 TCCAAGGCTGTCTGTTCTC 59 202829623 202829641 TGCTGTTGGTAACAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 1 1 1 74 14 35163207 35163228 CAGCATATACACTACGATTGGA 58 35163263 35163281 TAAATTTGCATGCCCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 3 1 1 75 14 35163207 35163228 CAGCATATACACTACGATTGGA 58 35163263 35163282 ATAAATTTGCATGCCCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017236.1 ENSRNOG00000057837 ENSRNOT00000092092 3 1 1 80 15 18950656 18963168 CCTCAGATGACTTTGCAGG 58 18963212 18963230 ATGTGCCATTCTTGCAGAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058905 ENSRNOT00000082661 3 1 1 60 4 177714456 177714476 AGGCTATGTCTACATTCAGTG 57 177714416 177714437 AATGTCGGGCTATTAACATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053316 ENSRNOT00000091153 1 1 1 60 1 208831029 208831047 GTTGACTTGGGTCATCTGG 58 208830987 208831005 ACATGGAGTGGTGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055118 ENSRNOT00000086485 1 1 1 60 2 188059523 188059542 GCAAGACTTTGCTGATACAC 58 188059565 188059583 TCCAATAAGGGCTGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060415 ENSRNOT00000082959 1 1 1 60 4 176244870 176244891 TTGCAAGTATAGCTGCTATGTC 59 176244911 176244930 TAGACATGGCCTCTTAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1411.1 ENSRNOG00000053703 ENSRNOT00000089765 2 1 1 106 7 143291048 143291170 CAGTCAACATCTCCGTGGT 60 143290960 143290978 ACCATAGGAGAAGCTGCTG 59 Novel Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 2 1 1 60 4 183450206 183450225 GAGTCTTGATTCACTGGTGG 58 183450248 183450266 TATGTTTCTGGTCTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059280 ENSRNOT00000079657 3 1 1 62 5 136071242 136071263 CAGATCGTATAAATCTTTCGCC 58 136071284 136071304 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047835.1 ENSRNOG00000023101 ENSRNOT00000038090 3 1 1 80 5 49821972 49821991 CAGACCTTATGGCATACAGG 58 49822031 49822054 TAATGTCAATCAGCTCCTTCAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061878 ENSRNOT00000084338 3 1 1 61 2 196541111 196541129 AGAGAAGATTAGCATGGCC 57 196541154 196541172 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056949 ENSRNOT00000090093 3 1 1 60 1 75450349 75450369 TGTACCTGACTAATCTTGGTG 57 75450388 75450409 TGTATAGAGGAGATAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014239.1 ENSRNOG00000057207 ENSRNOT00000050446 3 1 1 60 14 5837836 5837856 CTTAAGATAGAGTGTGGGCCT 59 5837875 5837896 TTGTTACAAATCTCACAGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054674 ENSRNOT00000091274 1 1 1 60 2 1587403 1587423 ATACGGAGAAGATTAGCATGG 58 1587444 1587463 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 3 1 1 60 10 104714041 104714059 AGACTCTGCCGATACACTC 59 104713999 104714018 TTTCTCAGTAAGGGCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056864 ENSRNOT00000081238 1 1 1 69 1 261223205 261223224 AGTCTTTGAGTTCACTTGCT 57 261223256 261223274 ATGTCATCCTTGCATAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099150.1 ENSRNOG00000052397 ENSRNOT00000078137 3 1 1 87 1 102924067 102924087 TCTACTGCGTTGGAGTCTG 59 102924139 102924158 CTTGGCTCTATAAGCGTCTG 58 Novel Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 2 1 1 67 19 37021308 37021486 TTTCAGCTAGCAATGGCAC 59 37021259 37021281 CGAGTCTTTATAAGCCAAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053389 ENSRNOT00000082434 1 1 1 61 5 42557964 42557985 GCACTGAATATAGTAAACCAGC 57 42558005 42558025 GGGAACAGGAATATAGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141172.1 ENSRNOG00000061735 ENSRNOT00000083818 3 1 1 80 17 70656040 70656059 TTTGATTCTGTTGGCTGCA 58 70655977 70655995 TTGGTTTGCATTGTGGTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050757 ENSRNOT00000073405 1 1 1 60 12 25307577 25307597 TATCTCAGAAGCTAAGCAGGG 59 25307537 25307557 CTAATACTTCCTGGGTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073021.2 ENSRNOG00000057061 ENSRNOT00000089432 1 1 1 61 4 82228992 82229010 CACCTCTGGAAGTCCACTC 59 82228225 82228243 CTATAGGAGCTGGCGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059273 ENSRNOT00000079541 1 1 1 70 1 189735807 189735825 ACAGAACGGAGAAGATCGG 59 189735859 189735877 AATACTGGGAAGCACCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061801.2 ENSRNOG00000060820 ENSRNOT00000083660 3 1 1 80 4 144917119 144917156 AGAAATCAGGAAACAACCCTG 59 144917196 144917216 CTTGTATTCTGTTGGTGATGC 58 Novel Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 2 1 1 60 1 37988434 37989890 AACCTTGTGTTCCTGGGAC 60 37988392 37988410 TTTGCTCCAGAAACGTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014739.1 ENSRNOG00000057494 ENSRNOT00000087499 1 1 1 60 14 29232339 29232362 GAGAAGAGGATGAGTCTAGAATGG 60 29232302 29232321 CCACATCTCATACCCACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072371.1 ENSRNOG00000002200 ENSRNOT00000002990 2 1 1 60 14 10625026 10625045 GGACATTCCAATACCCAACC 59 10625067 10625086 CATCAGAGGGAGTTCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057261 ENSRNOT00000080414 1 1 1 60 1 70101731 70101751 TCATCAATATGGTGATCTCCC 57 70101773 70101791 GTTCACCTCTCCTTAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017564.1 ENSRNOG00000053129 ENSRNOT00000091011 2 1 1 80 15 27091011 27091031 CCACTGTCATGAGTAGAGC 57 27091074 27091093 CCCTGAATAATGGAGTGAGC 58 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000061433 ENSRNOT00000079463 1 1 1 63 6 133753221 133753240 CCAGTGATGAGAATTCTGGG 58 133753266 133753284 GACCTCAGAGTTACAGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044505 ENSRNOT00000069772 1 1 1 60 14 34698463 34698484 CATCTCATCTGATCTTGGAAGC 59 34698503 34698523 CTCTCCCACTCAAGTACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059449 ENSRNOT00000082659 2 1 1 60 10 59151747 59151765 TTGAGTCCAGGAGTTCTGG 59 59151789 59151807 AGAACTTAGTGCGGACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 3 1 1 70 13 77850548 77850568 GTGAAGAGAAGACACCAAGAG 58 77850600 77875993 AAACCCAGCTTCCAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015078.1 ENSRNOG00000055956 ENSRNOT00000085875 3 1 1 61 14 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 46650338 46650356 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000058531 ENSRNOT00000083854 3 1 1 61 1 116751248 116751269 GACAACAGAAAGTCAAGAACAG 58 116751208 116751227 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059132 ENSRNOT00000088699 1 1 1 60 3 139747579 139747597 CAGAGGCATAATAGGTGGG 57 139747537 139747556 TAGATACAGCCTGTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060215 ENSRNOT00000090363 2 1 1 60 1 207364593 207364613 ACATGTGAGTCAGTAGTAGCA 59 207364553 207364573 AGGTCAGAGCACTGATTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 2 1 1 65 18 76737341 76737359 GAGCTCTATGACCCATGCA 59 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD62 ENSRNOG00000060627 ENSRNOT00000086225 2 1 1 60 3 11243827 11243848 GTTCCAATAGATCCTTCTGACC 58 11243868 11243887 CTGTCCTCTTCATCTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029956.1 ENSRNOG00000056777 ENSRNOT00000077529 3 1 1 80 10 61152830 61152852 TCATACATACACTCATGACCAG 58 61152771 61152790 GGAGGACGTACATTTCACAG 58 Novel Rattus norvegicus 81 AC131475.1 ENSRNOG00000049632 ENSRNOT00000074541 1 1 1 60 1 221360469 221360487 GCCTTGAACTCAGAGATCC 58 221360427 221360445 GTGCATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056552 ENSRNOT00000080847 2 1 1 60 1 228378576 228378594 TCAGTCCTTCTCTTGTGGT 58 228378618 228378636 CCAACCAGTCCAGATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 2 1 1 84 X 73370315 73370333 ATAGCCAAGAACTTGCCTG 58 73370379 73371454 GGCCAGTTAACAGTATCAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058230 ENSRNOT00000085268 3 1 1 60 2 205576876 205576894 CTGACTGGATGGGTGTCTC 60 205576917 205576936 CAACTCAGGGAATGACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106505.1 ENSRNOG00000042948 ENSRNOT00000067348 2 1 1 82 1 169160103 169160131 GTTCATACTGCTCTCCATGAG 58 169160041 169160059 AGTGTGGACACAGAGACTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059829 ENSRNOT00000088708 1 1 1 60 10 20434382 20434401 CTGGCAAAGGTGTAACATCC 59 20434422 20434442 CCACATCAGTAGAATCAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.2 ENSRNOG00000059506 ENSRNOT00000084156 2 1 1 80 X 128182886 128182909 GAGATTTCACCTCACATGCG 59 128182951 128182970 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07028795.1 ENSRNOG00000061514 ENSRNOT00000078827 1 1 1 60 17 86657387 86657408 AAAGATAAAGGTGGACAACCAC 59 86655452 86655470 AAACTTGAAATGGCTCGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035641.1 ENSRNOG00000057141 ENSRNOT00000091323 3 1 1 105 12 20599582 20659186 CATTCATGCTCTCATTACTACCC 59 20599499 20599517 CAGCAGTGAAGGAGTCCTC 60 Novel Rattus norvegicus 81 AC141028.3 ENSRNOG00000055364 ENSRNOT00000081389 3 1 1 80 X 5691106 5691129 AGATTTCACCTCACATGCGA 60 5691170 5691190 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057431 ENSRNOT00000090249 2 1 1 67 2 186408837 186408855 GTGTCAGTAGGTGGCAGAG 60 186408884 186408904 ACTCAGATGTTCATTGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055969 ENSRNOT00000078443 1 1 1 60 6 115712287 115712305 ACAAAGCCCTCAAAGTCCA 60 115712245 115712264 TTCGATCAACATTACTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.1 ENSRNOG00000053928 ENSRNOT00000085305 2 1 1 88 2 188762104 188762122 TTTGTTCGCACCTGTTACC 59 188762174 188762194 GAGAAGAACAAGGATGGGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052261 ENSRNOT00000086384 1 1 1 60 7 36004983 36005003 TCATTGATTGCCAGAGTTGAG 59 36005025 36005043 GGAGGAAGAACAGGACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 3 1 1 147 19 9112634 9112652 CATCATCTCTGCTGAGGGT 59 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103690910 ENSRNOG00000052269 ENSRNOT00000086405 1 1 1 60 X 139329786 139329805 AAAGAAGTATGAAGCCCTGG 58 139329745 139329764 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060792 ENSRNOT00000089461 1 1 1 60 6 63954003 63954022 TTGACTTGACTGATCTGGCT 59 63953962 63953983 GGAGAACATACATGAGAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1340 ENSRNOG00000053238 ENSRNOT00000079362 1 1 1 60 8 43969730 43969751 TCATTTCATACGGGTTCATCCT 60 43969691 43969710 GACCTGCCCTCTTTAGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 3 2 2 96 2 208550250 208550269 CGTTTGTGTACTGATTAGCG 57 208550328 208550854 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054036 ENSRNOT00000084215 3 1 1 83 5 138029498 138029516 TGTTCTTAGAGCCACTGCA 59 138029563 138029581 AGGGCAGACACAACTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000051409 ENSRNOT00000083073 1 1 1 60 1 143065412 143065430 AGAGACTTTGACAGCCCAG 59 143065370 143065389 AACATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000060200 ENSRNOT00000080019 2 1 1 65 1 194979942 194979962 CTCAGTCAAACATTCCTTGGA 58 194979897 194979915 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052215 ENSRNOT00000091709 2 1 1 62 6 87098939 87098957 AAGAGACTCCTTGGTGGTG 59 87098983 87099001 TGAACTGCCATCTTCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029198.1 ENSRNOG00000056896 ENSRNOT00000081217 2 1 1 81 10 12947539 12947834 CGAAAGGACCACAAACACG 60 12948113 12948132 TTAGAACTGTCACCACAGGG 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000060430 ENSRNOT00000086005 2 1 1 60 4 77463099 77463122 CACAGTCAGTTACAGATTGAACTC 60 77463062 77463081 AAGTGCAGTAGTGAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025301.1 ENSRNOG00000060395 ENSRNOT00000082590 3 1 1 102 16 32509993 32510013 CAGAGCCTGAAGAATTTGTGG 60 32509748 32509929 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 2 1 1 61 1 142027779 142027799 TTCCTAAGGCTGCTACCTG 59 142027824 142027842 TGCTGGCTCAGTAGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 Adora3 ENSRNOG00000050743 ENSRNOT00000082943 2 1 1 80 2 208373761 208373780 CTTCCATCATGTCCTTGCTG 59 208373818 208375728 TGGTAACCGTTCTATATCTGACTG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057528 ENSRNOT00000090734 1 1 1 60 1 210082675 210082699 GTTTGAGACTACAGTGATTTAGAGG 59 210082717 210082735 TGGTGCTGAACTTAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057528 ENSRNOT00000090734 2 1 1 60 1 210082732 210082751 ACCATGATAGTGACCTTCCA 58 210082773 210082792 CAGTTCACCACTCCTTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057276 ENSRNOT00000087010 1 1 1 60 2 62094690 62094710 ATACAGGGAAGATTAGCATGG 57 62094730 62094750 GGAACCCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000060473 ENSRNOT00000087310 3 1 1 60 1 274674901 274674921 AGTGATAGGAGCGGTTATACG 59 274674942 274674961 CATCTCCGTGTACAATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021584.1 ENSRNOG00000041572 ENSRNOT00000063325 1 1 1 60 13 79425268 79425288 AAGGACATTGGAAGAAAGCAG 59 79425228 79425246 TGCTCAATCTCACAAGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 1 1 1 60 4 102514759 102514778 AGTTACTGTCTGCATCTCTG 57 102514801 102514819 ATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044576 ENSRNOT00000069843 1 1 1 60 1 129014456 129014474 TAAACATGCCCAGTCTCGT 59 129014414 129014432 ACATACTAACCAGGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055045 ENSRNOT00000080937 1 1 1 60 1 260993739 260993757 TGCACCTGAAGAGAATGAC 58 260993781 260993799 GCTCCAATAGAGGAACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000054191 ENSRNOT00000089688 3 1 1 65 1 228362699 228362717 CATTTGCTGTGGACATGAC 57 228362744 228362764 GCTAGTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055296 ENSRNOT00000080947 3 1 1 60 4 93878945 93878963 ACCTACAGGTAAAGCAGGT 58 93878903 93878922 CTCTTCTATGCCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052404 ENSRNOT00000086677 1 1 1 60 20 39121399 39121419 GCATTGTAAATGGAGTTGCTG 59 39121359 39121378 AACAGGTAAATGTCACCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115509.1 ENSRNOG00000049126 ENSRNOT00000071441 2 1 1 118 2 78633786 78633804 AAGACTCCCAGCTCAAAGG 59 78633883 78633907 GTCCAATCTATTTGGTCTGTAGG 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054248 ENSRNOT00000089641 1 1 1 60 20 20175368 20175388 TCATAGCTTCAGCTATGACAG 57 20175328 20175346 CTGTATAACCCAGGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051902 ENSRNOT00000088911 3 1 1 60 13 57583413 57583431 GATACCGTGATCACGAGGG 60 57583371 57583389 ACATCCAGAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053475 ENSRNOT00000085627 3 1 1 63 3 61498751 61498772 GGAACGATAGAGAAGATTAGCA 58 61498709 61498727 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044089.1 ENSRNOG00000019773 ENSRNOT00000026767 2 1 1 80 19 57663761 57663780 GTACGCAATAACCGTTTGGT 59 57662321 57663719 ACACCTTTCTCACCTGTGAG 60 Novel Rattus norvegicus 81 AABR07072916.1 ENSRNOG00000061523 ENSRNOT00000085319 2 1 1 60 3 112916615 112916635 GGTGAATGTCGGATATCTGTC 58 112916575 112916596 CCTGACTCAGATAATGTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060734 ENSRNOT00000085272 2 1 1 60 13 27326628 27326647 AGGTAATGAGGCTGTATCCT 58 27326587 27326606 TAGACATGCCATTTCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052663 ENSRNOT00000086940 1 1 1 64 2 97060876 97060894 CTAATTTGGAACCCGAGGG 58 97060830 97060848 AATTTGCGTGTTCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000060589 ENSRNOT00000086222 1 1 1 60 6 23448740 23448759 GCTGTGATGACTTTCATTGG 58 23448699 23448718 CAAGAGAAGAGGCATCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134009.1 ENSRNOG00000053038 ENSRNOT00000090744 2 1 1 74 19 55510476 55510496 GAAAGAACAGGAGGACGTG 58 55510534 55510554 CTGGCTGCAGTGACTAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 pRNA ENSRNOG00000053483 ENSRNOT00000091120 1 1 1 61 20 56182822 56182840 TACCAGGCATGACTTCCAG 59 56182779 56182797 CAATAACGGGACAGGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058188 ENSRNOT00000080426 2 1 1 60 13 65681961 65681982 ATGACACAGAGATTAGTGTAGC 58 65682000 65682021 TAGGACCCTTCCTAAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045206 ENSRNOT00000070473 3 1 1 60 6 121315990 121316009 TTCAGAAGCTAAGCCAGGTC 60 121315949 121315973 GATATTCCAAGACAGTATCCTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060385 ENSRNOT00000079851 1 1 1 60 7 140139265 140139283 CTGTTGGTTTCAAGCAGGT 59 140139223 140139241 TCTGAAATGGCCAACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061840 ENSRNOT00000083001 3 1 1 64 14 49391769 49391787 ATAAGAGTAGCTCCCTGCT 57 49391813 49391833 ACCCTACATTCCTACAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000047655 ENSRNOT00000071216 2 1 1 116 3 18805261 18805436 TTTCACACTATTCACAGTGTCC 59 18805513 18805531 TTTACACTTGAGCTGGCAC 58 Novel Rattus norvegicus 81 AABR07017855.1 ENSRNOG00000053749 ENSRNOT00000092202 3 1 1 80 15 31895260 31895460 TCCAATTAAACTGGGTGAGC 58 31895503 31895521 AAGCTATGGATCCCTCTGG 58 Novel Rattus norvegicus 81 AABR07049554.1 ENSRNOG00000043738 ENSRNOT00000069005 2 1 1 63 5 128398354 128398372 ACTTTGTAGTCCAGGCTGG 59 128398309 128398327 CAGCACTTAGGAGGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054615 ENSRNOT00000077466 3 1 1 60 13 5099890 5099908 CCAGTCTTCACTCAAGGGT 59 5099930 5099950 GCTTGTTTGGAGATTCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 1 1 1 60 15 87221768 87221786 CTCAGAAGCTAAGCAGGGT 59 87221808 87221828 ATATTAAAGGGAGGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051987 ENSRNOT00000087696 3 1 1 60 5 58591038 58591056 CCCAGAAGAAAGACAAGGT 57 58590996 58591017 GAACATGAACATAACCTTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056985 ENSRNOT00000091798 2 1 1 73 5 129142755 129142773 AATGAGGTTTATCCGAGGC 57 129142700 129142718 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 2 3 4 134 9 81644546 81644564 CAAAGCCAAGGATCACCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 U12 ENSRNOG00000054820 ENSRNOT00000085854 2 1 1 60 3 10783695 10783714 AAAGGTTGCTATCTAAGGCG 58 10783736 10783755 GGCAGATCGCATTACTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055819 ENSRNOT00000087345 2 1 1 60 6 95402901 95402919 GACCGGTTTCAGTCAAAGG 59 95402943 95402961 CTTGTTCGGAGGTTCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047576.1 ENSRNOG00000048750 ENSRNOT00000075765 1 1 1 80 5 38019016 38019038 AGATTTCACCTCACATGCG 58 38018954 38018973 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061076 ENSRNOT00000084975 2 1 1 60 20 19411381 19411399 CAGCTATGACATCTGCCAC 58 19411423 19411441 GCCCTACCTAGATCTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021022.2 ENSRNOG00000058197 ENSRNOT00000083282 2 1 1 60 13 53782491 53782510 ACTTCATTTGGAAGGGTGTC 58 53782532 53782551 AGCAGAAAGACATGATCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056688.1 ENSRNOG00000043567 ENSRNOT00000068834 2 1 1 66 7 36917681 36917699 AGGGAAGTATGTCACTGGG 58 36917633 36917651 GAATGACACTAGGCCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057150.1 ENSRNOG00000058424 ENSRNOT00000090748 1 1 1 80 7 57814160 57816503 GCACCTATTATGGTAACTTGCG 60 57814101 57814122 TACAGGAGATCACAACAGAGAC 59 Novel Rattus norvegicus 81 AABR07004894.1 ENSRNOG00000028974 ENSRNOT00000047494 3 1 1 90 1 166282439 166282458 ACTAAGAGACCACCTGTCCT 60 166282364 166282386 CATCATGGGCAATCACCAG 59 Novel Rattus norvegicus 81 SCARNA16 ENSRNOG00000055493 ENSRNOT00000083232 1 1 1 60 5 148502394 148502418 CTTGACCTAAAGTAAATTCCCAGAG 60 148502358 148502379 CTGTTACTGCAAATTCTAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031184.1 ENSRNOG00000056808 ENSRNOT00000091534 2 1 1 80 18 3617481 3617500 AGACCCAACAAATGTTCCAC 59 3617416 3617439 CTTACATTGCGTGAGCTCTG 59 Novel Rattus norvegicus 81 AABR07052755.2 ENSRNOG00000032597 ENSRNOT00000043221 3 1 1 61 3 73438769 73438788 TGTAGGACTGACAGATGACC 59 73438725 73438746 AGTAGATGACTAGAAACACAGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059873 ENSRNOT00000084428 2 1 1 60 19 21459617 21459638 GAGCAGTACAGACAAGATTAGC 59 21459578 21459597 ACTTCACAAATGTGCACGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 3 1 1 60 17 52756000 52756020 AACTCAACCTGGTTACTACCT 59 52756040 52756060 TTATTCCCATCCTCTATCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057970 ENSRNOT00000079471 1 1 1 61 15 41941450 41941468 AAAGAGACCATTGTGGCAG 58 41941407 41941425 TTGCTATAGCACAGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 1 1 1 60 13 78855391 78855411 CAGTGATGTGATGATTCTGCC 60 78855431 78855451 AATGGAACGGTTGTAAAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047036.1 ENSRNOG00000061874 ENSRNOT00000091550 1 1 1 104 5 16464402 16464420 CACACTCAAGCACAAACAC 58 16464488 16464506 ATGTTTGCGTGAGTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000056434 ENSRNOT00000088952 1 1 1 60 13 60569737 60569758 TTGCATGTGGAAATACCTTCTC 59 60569776 60569797 AGCATGTTCTGGATACATTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052065 ENSRNOT00000086444 1 1 1 62 13 91465854 91465872 ATTGCTGCTGTGTCATGTG 59 91465810 91465831 AATGAATGAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054894 ENSRNOT00000088069 1 1 1 60 19 62201051 62201071 ACGATACAGAGAAGATAGCCT 58 62201092 62201111 AATTTGCGCTATGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061077 ENSRNOT00000084064 1 1 1 60 15 80581191 80581209 GAGAAGATTAGCATGGCCC 58 80581149 80581167 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056569 ENSRNOT00000090068 3 1 1 60 13 183428 183450 GATACAGAGAAGATTAGCATGGC 59 183469 183488 GAACGCTTCACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059077 ENSRNOT00000083530 3 1 1 60 7 137917811 137917830 TATCTTTGGTGTGCAATGGT 58 137917770 137917791 ACAATAGGCTACATACACTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055704 ENSRNOT00000085093 1 1 1 60 5 16731971 16731990 CTGCTGTGTCACATATTCCT 58 16731930 16731949 CACAGCATGGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000059686 ENSRNOT00000086923 2 1 1 74 5 165438645 165438664 TTTGCTAATGACCTGCTGAG 58 165438590 165438608 AACAAGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055815 ENSRNOT00000085244 1 1 1 60 20 20782653 20782674 AGGTATCTTTGTGACATGTCAG 58 20782614 20782632 GAACATGTTCTTCCGTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061780 ENSRNOT00000091633 3 1 1 60 18 35102629 35102647 GGATATGAGGACAAGCCAG 57 35102668 35102689 CCAAATCAACTCTGATGATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058868 ENSRNOT00000085157 1 1 1 60 18 38289411 38289434 GAAGCTGTCTGTTCTACTAAAGAG 59 38289451 38289471 CAACTAAAGTCTGGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036200 ENSRNOT00000054323 2 1 1 60 13 58460949 58460968 CCGATCTCATCTGATCTCGG 60 58460989 58461009 TCTCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056999 ENSRNOT00000085163 3 1 1 60 5 145352643 145352661 AAACAGCACAGAGATCAGC 58 145352601 145352619 GAACGCCTCATGATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056039 ENSRNOT00000086198 2 1 1 61 5 63650698 63650716 GTGTCAGTAGGTGGCAGAG 60 63650741 63650759 TGCTCATAGGTCAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031738.1 ENSRNOG00000055037 ENSRNOT00000090160 1 1 1 96 18 31114014 31114032 AGAAGGAAGAGGCTGAAGG 59 31113936 31113954 GATAGTGAGCTGTTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034730.1 ENSRNOG00000046027 ENSRNOT00000071362 1 1 1 80 11 85475144 85475166 AGATTTCACCTCACATGCG 58 85475209 85475228 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA65 ENSRNOG00000055379 ENSRNOT00000080333 1 1 1 60 4 34530327 34530347 AATACTGAACTGACAGTGAGC 58 34530287 34530308 CAACATTCATATGTAGGACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056340 ENSRNOT00000084479 3 1 1 67 7 83264179 83264201 GGTAGGTGTGACTTCTATATCAC 58 83264226 83264246 CACTGGTAGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051406 ENSRNOT00000089687 1 1 1 60 18 4314563 4314581 CTCCACTTCACATGAGCAC 59 4314603 4314623 CTGAAGAATGTTCCTCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058914.1 ENSRNOG00000032026 ENSRNOT00000044982 3 1 1 79 7 142695729 142695747 CCACTCTACAACTACCCGG 59 142695666 142695684 AACTTGTCAAAGGGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044937 ENSRNOT00000070204 1 1 1 60 18 27292893 27292911 ACAGATCGCATCCAATCTC 57 27292932 27292953 GCAGTCTCTAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060256 ENSRNOT00000079484 2 1 1 60 1 61398199 61398221 GGAGCATAATAGAATGGACTCCT 60 61398161 61398182 TAGGAAGGGTAGCCATTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060083 ENSRNOT00000091214 2 1 1 60 18 40063442 40063465 GTTATGTCTACACTCAGTGTTCTG 59 40063482 40063502 ATGTCAGGCTACTACATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054456 ENSRNOT00000083716 1 1 1 60 15 101142884 101142905 GTCAAGGGTATAGGAGTAGCTG 60 101142923 101142944 TAGTGGATTACCTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063632.1 ENSRNOG00000029825 ENSRNOT00000044583 1 1 1 83 6 38006787 38006805 GAATCCCTCATTGTGAGGG 58 38006635 38006740 GTTCCAGACCAGAACACAG 58 Novel Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076920,ENSRNOT00000076871 2 2 2 80 X 74334913 74334933 GATTGCCTGGATTTAGAGGAG 58 74334762 74334871 CAGGATTGTTCCCGTAAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057105 ENSRNOT00000090607 2 1 1 60 3 176928440 176928461 CTAGAGTGCTTAGTTTAGCAGC 59 176928401 176928425 CTAGTACAGAGGCCATACTAATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000385.1 ENSRNOG00000055421 ENSRNOT00000089608 1 1 1 60 1 11873244 11873265 TGGCATTGCAGTTGATATTCTG 60 11873286 11873304 AAACGAGGACCATGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059584 ENSRNOT00000082745 1 1 1 60 18 16136825 16136843 GAGAAGATTAGCATGGCCC 58 16136783 16136801 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA53 ENSRNOG00000056599 ENSRNOT00000080363 3 1 1 60 7 31818082 31818101 TTAGTCCTCAGGTTCTGACG 59 31818041 31818061 GTCCTGACAGTAACACATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061875 ENSRNOT00000086457 1 1 1 60 5 48749448 48749467 TGCCTGAAGCTAAGTATGTG 58 48749407 48749426 GGTCTAAGAACCGTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127640.1 ENSRNOG00000056331 ENSRNOT00000088472 2 1 1 82 1 75461889 75462109 GGGACCACAGAAATAGCAG 58 75461825 75461843 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 AC127640.1 ENSRNOG00000056331 ENSRNOT00000088472 3 1 1 83 1 75461891 75462111 TCGGGACCACAGAAATAGC 60 75461826 75461844 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA69 ENSRNOG00000061195 ENSRNOT00000083166 3 1 1 60 X 123705907 123705926 AGCAGGTAGCAATTACAGTG 58 123705866 123705886 TCTTTCAGCAGGATTAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060289 ENSRNOT00000090777 2 1 1 60 X 23467627 23467645 AACCTCCAAACAAGCTCTC 58 23467585 23467603 CTTGGAAGCTTGACTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054693 ENSRNOT00000081609 1 1 1 60 7 92034040 92034059 TTACATGTGCATCAGTTGGT 58 92034081 92034100 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058303 ENSRNOT00000081219 2 1 1 61 7 125509686 125509707 GATACAGAGAAGGTTAGCATGG 59 125509727 125509747 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052625 ENSRNOT00000091949 1 1 1 60 18 27553325 27553346 ATACAGAGAAGATTAGCATGGC 58 27553365 27553385 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052997 ENSRNOT00000081858 2 1 1 61 9 99150843 99150861 AGAGACTTTGACAGCCCAG 59 99150884 99150904 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058297 ENSRNOT00000082526 1 1 1 60 3 7177503 7177524 AATACAGAGGTTAGCATAGCCC 60 7177545 7177563 ATGGAATGCTTCACAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 NRON ENSRNOG00000058888 ENSRNOT00000084664 2 1 1 60 3 12870719 12870737 ATTCTTCTCATGCCACCAG 58 12870761 12870779 CACAGTAAAGGAGCAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.1 ENSRNOG00000048337 ENSRNOT00000071413 3 1 1 82 1 222483989 222484008 GCAGTAAGAGGAAGAGGAGG 59 222483923 222483941 CTACCTCTTGGAGGTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042733.2 ENSRNOG00000060024 ENSRNOT00000092016 2 1 1 82 19 6026880 6028625 TTTAAGAAGGTACTGCCGTG 58 6026817 6026835 ATCTAAGAGGACTGGTGCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058384 ENSRNOT00000084759 2 1 1 60 18 14119286 14119304 GTGCATTAGAAGGTGGCAG 59 14119326 14119346 ACAGGTCAGAACTCTTAAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.1 ENSRNOG00000031313 ENSRNOT00000042660 3 1 1 60 10 34355980 34356002 GGAATAAGGAATGTTCCGTACTG 59 34356020 34356040 CATTCTCATTACGCTTTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053191 ENSRNOT00000080932 2 1 1 61 X 98935881 98935899 CCACATGTGCATCATAGGT 58 98935838 98935859 AGTCAGAACACTGAACTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060935 ENSRNOT00000086606 2 1 1 60 15 86819399 86819421 GGCTGTTATGTTACCTATGTGTC 59 86819361 86819380 GAGCATAGGCATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029111.1 ENSRNOG00000046888 ENSRNOT00000074560 2 1 1 60 10 7696253 7696272 ATGCAGCTCTGACTATCTCG 60 7696295 7696313 CTCTGTGAATTTGAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0405.3 ENSRNOG00000051142 ENSRNOT00000076145 2 1 1 60 8 40505527 40505547 TCTTCTTGGGAATCTATGTGG 57 40505568 40505587 GCAATCAGAACAATCAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054918 ENSRNOT00000080858 1 1 1 60 6 79057972 79057992 CGATACAGAGAAGAAGCATGG 59 79058013 79058032 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053666 ENSRNOT00000077120 3 1 1 60 18 16511484 16511506 GATACAGAGAAGATTAGCATGGC 59 16511526 16511544 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054766 ENSRNOT00000088295 1 1 1 60 15 76116726 76116744 AGTATGTGGCTGGGAAGAG 59 76116684 76116704 ATTCAAGTGTCCATAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058134 ENSRNOT00000080412 2 1 1 61 7 15377876 15377895 TTGAAACAATACAGAGGCCC 58 15377919 15377937 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.2 ENSRNOG00000057086 ENSRNOT00000087750 1 1 1 60 4 117758009 117758027 CTGACACTGCCTCATTCTC 58 117757967 117757987 ACACTAGGATTATGGTCACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052447 ENSRNOT00000087273 2 1 1 60 15 32756615 32756634 AAGACAACCTTACCCGAGAG 59 32756657 32756675 AGCAGCTGCTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063638.1 ENSRNOG00000036511 ENSRNOT00000054618 3 1 1 61 6 38572551 38572569 CATGATCCAGCCATCTCTG 58 38572593 38572612 CCTAGTCATGCTTGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055395 ENSRNOT00000081668 1 1 1 60 7 45856549 45856569 ACAGAGAAGATTAGCATAGCC 57 45856588 45856609 GTGGAACACTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056567 ENSRNOT00000078132 3 1 1 60 1 197930691 197930709 AGGCAGATAGCCTCATCTC 58 197930649 197930667 ACTGAGTGAACAGCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562948 ENSRNOG00000013975 ENSRNOT00000018934 1 1 1 80 1 48023258 48024032 CTAATGCAACAGGAATGAACG 58 48024074 48024092 GTTTCAGCATCCGACTCTC 58 Novel Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 1 2 2 80 8 64822305 64825762 CAGAATGGAGCATGTGTTCC 59 64822244 64822262 GGGTCATGTCGTCTGAGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056912 ENSRNOT00000091181 1 1 1 60 15 35396901 35396919 ACATCAGTAGGTGGCAGAG 59 35396941 35396961 TTCATAGGTCAGAACAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052608 ENSRNOT00000077696 2 1 1 60 20 8024471 8024489 TAAGGGTTGACCTGCTGAG 59 8024511 8024531 GGAACTATGAGGGAAAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052608 ENSRNOT00000077696 3 1 1 60 20 8024628 8024646 TGCAGATTTGCTTTGCTGG 60 8024670 8024688 CAGCAGGAAACAAATGCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059196 ENSRNOT00000083107 3 1 1 60 4 174894022 174894040 TTCAGTCAAGGGTACACCA 58 174893980 174893998 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 3 1 1 61 20 867054 867076 AGAGGGTATGTCTACACTTAGTG 59 867015 867036 TGCAAGGCTACTAATTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 2 1 1 60 15 109415263 109415281 CATGGGATCTCCAACTGCA 60 109415305 109415323 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060424 ENSRNOT00000091293 3 1 1 61 4 135568296 135568316 GCAACACAGAGAAGATTAGCA 59 135568338 135568357 AGAAGCATGAGTGTTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044303 ENSRNOT00000069570 1 1 1 60 20 50281022 50281040 TGAAGCTAAGCAGGGTCAG 59 50280980 50280999 CTGGTCTTGCTTGGTATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061239 ENSRNOT00000085239 1 1 1 61 4 115021738 115021756 AGAGATTTAGCTTGGCCCT 58 115021695 115021713 TAAGCTTGGCAGTAGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052458 ENSRNOT00000088240 3 1 1 64 11 72756789 72756807 TTGAGTTCAGTTCAGGGCA 59 72756743 72756762 CAGCCAATTTCAATGTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052642 ENSRNOT00000092229 3 1 1 60 19 12375606 12375626 TTGTTGACTCCTGAGATTTCC 58 12375646 12375666 CTACCACCACAAAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000058981 ENSRNOT00000078524 1 1 1 60 18 26569098 26569119 CATAAATTAATGCTTTGCGGCC 60 26569139 26569158 CTCCTGAAACCCAAGATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 3 1 1 65 18 34788165 34788184 TCCTCTTCCTCTTCCTCCTC 60 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060986 ENSRNOT00000084951 2 1 1 82 11 35841919 35841937 AATGAGGTTTATCCGAGGC 57 35841983 35842001 GGGCTGAGAGGATTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Vault ENSRNOG00000052373 ENSRNOT00000090410 1 1 1 60 18 29647887 29647905 GCTATGTAACGTGGTCGGT 60 29647929 29647947 AACCACTCACCAGATAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000057112 ENSRNOT00000084213 2 1 1 63 11 68161327 68161347 CCAATTGTCACTAGATCTCCC 58 68161284 68161302 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051701.1 ENSRNOG00000060562 ENSRNOT00000080646 1 1 1 80 3 19559665 19559686 ATGACTCTGAGACAATTTCACC 59 19557950 19559330 GTTGGAAATGTCATTGCCAG 58 Novel Rattus norvegicus 81 SNORA4 ENSRNOG00000056026 ENSRNOT00000077510 3 1 1 60 11 81375321 81375342 TTAACCAGTTCACGCTATTTGG 59 81375282 81375301 TGGTATAGTCCACTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056622 ENSRNOT00000079147 2 1 1 60 7 15854188 15854208 CTTTGTTCCCTTACAGTTCCA 58 15854227 15854248 TCCTCTTTGACAAAGTACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055195 ENSRNOT00000089711 3 1 1 60 19 21892775 21892794 GATAGAGGAGAGGCTGTGTC 59 21892734 21892754 TCTACTCATTCAGATGTCCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052242 ENSRNOT00000080776 2 1 1 60 18 60869545 60869564 TTTGGATTTATGGCAGGCTC 59 60869587 60869605 GTTTGCTCTAGCATGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015112.1 ENSRNOG00000058903 ENSRNOT00000084585 1 1 1 86 14 47268304 47268323 ACAATCAAACAGGTGAAGGA 57 47268370 47268391 CCTTTGGTTTATATCCAGGGT 58 Novel Rattus norvegicus 81 AABR07043829.1 ENSRNOG00000049520 ENSRNOT00000070941 2 1 1 60 19 42778069 42778088 TCTGAAGCTAGACATTCCGA 58 42778028 42778047 TTCCTTGGGACTCTAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC102976.1 ENSRNOG00000057798 ENSRNOT00000086690 3 1 1 60 19 24656230 24656248 AACACATGGAAACAACCCT 58 24656270 24656290 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000055168 ENSRNOT00000077371 3 1 1 115 3 23279579 23279598 CTATAGGCATGGCACTAGGA 59 23279483 23279502 TGACCCTGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051981 ENSRNOT00000087149 3 1 1 60 5 80234146 80234167 GGAGACGGGTTATGTATATGCT 60 80234186 80234206 GGCTGATAATCATTCAGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053277 ENSRNOT00000084468 2 1 1 60 3 124796083 124796101 ATGAGCGATTGTACTCGGA 59 124796124 124796143 ATTCCAGTTTCCCACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 3 1 2 73 6 139486817 139486945 AAAGGTGTCCAGTGTGAGG 60 139486982 139487000 AGTTTCAGGGACCTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068360.1 ENSRNOG00000050471 ENSRNOT00000070987 3 1 1 84 9 101251575 101251593 TCTTCACATCATTGTGGCA 57 101251639 101251661 TCTGATCTGTTTGGTCTTTCC 58 Novel Rattus norvegicus 81 AC096370.2 ENSRNOG00000060047 ENSRNOT00000091116 2 1 1 80 1 259649792 259649810 GCATTCTTCACCTCCTGAC 58 259648103 259649749 CTTCTCTGGTGTTTACCAGC 59 Novel Rattus norvegicus 81 Cetn2 ENSRNOG00000059593 ENSRNOT00000078929 1 1 1 80 X 152928837 152928857 CGTTCAAGAATCTTAAGCGTG 58 152928418 152928798 CTTCATCAATCATTTCCTGGAG 57 Novel Rattus norvegicus 81 AABR07030823.1 ENSRNOG00000046001 ENSRNOT00000072687 3 1 1 179 10 105283579 105283598 TACTGCAGGAGTTTGAGGAG 59 105283417 105283437 AGTCAAAGTTACCTTTGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033524.1 ENSRNOG00000032213 ENSRNOT00000046693 1 1 1 60 11 25674469 25674488 CAGTGAGTAGATGCACAGAG 58 25674428 25674447 TTGGTCTTGATGGTCTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122630.1 ENSRNOG00000060740 ENSRNOT00000090086 2 1 1 60 4 41902709 41902727 GTAGATGCAGACTCAGTGG 57 41902750 41902769 ATAGAGTGACAGAGACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 2 1 1 60 7 32193188 32193209 GTTTACGGCAAAGTCAATACCT 59 32193228 32193248 CAGCATACTGTGTCTTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053482 ENSRNOT00000078365 1 1 1 60 7 119122782 119122801 GTATCCAGAACATGCAACAC 57 119122823 119122842 CCTCTACTATAAGGCTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053482 ENSRNOT00000078365 3 1 1 60 7 119122780 119122801 ATGTATCCAGAACATGCAACAC 59 119122821 119122840 TCTACTATAAGGCTGGCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027212.1 ENSRNOG00000057683 ENSRNOT00000081494 3 1 1 80 17 19538237 19538259 CTTCAACTATACCGTACCTATGC 59 19538298 19538319 GGAACACAGAGTTCCATCCT 60 Novel Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 2 1 1 62 19 12402889 12402907 CAAGAAGTTAGACCGCAGG 58 12402843 12402863 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 3 1 1 60 5 91133002 91133020 ATGAAGAACGCAGCTAGCT 60 91133043 91133062 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 1 1 1 60 7 110500104 110500125 GTGGCTACTATGTCACTTTCTC 59 110500065 110500083 GCATTCACATTGCCTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061864 ENSRNOT00000082834 3 1 1 73 4 123261572 123261591 AAAGTTCAAAGTTCGCAGAG 57 123261518 123261539 ATCATTGAGATGTTCCTAAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 3 1 1 67 6 75606889 75606907 TTATCCATTGCACTCCGGA 59 75606840 75606858 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052621 ENSRNOT00000086674 2 1 1 60 11 23071753 23071774 CCTATAAGTGTTGCAGATGTGG 59 23071714 23071732 TCTTCTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054114 ENSRNOT00000082977 1 1 1 60 11 16497657 16497675 GAGAAGATTAGCATGGCCC 58 16497699 16497717 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052714 ENSRNOT00000077490 2 1 1 60 11 81377001 81377022 GAAGTGTTCTATTGTCGTTCCC 59 81376962 81376986 CTAGGCAGAGATAGTAATGTATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 1 1 1 60 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138172 120138195 CTCTCCTGGAGATACAGAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058168 ENSRNOT00000082060 3 1 1 60 9 111065964 111065983 ATAGGAGGAGCAGTCTTTGG 59 111065923 111065943 GAAATTCTAGCAAGGGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135901.1 ENSRNOG00000054640 ENSRNOT00000086148 2 1 1 83 5 154103701 154103724 CTCTCCTGTTGGCCTTACC 60 154103771 154103789 CAAAGGCCCTGTGTTTGAG 59 Novel Rattus norvegicus 81 AABR07009377.1 ENSRNOG00000055011 ENSRNOT00000087889 3 1 1 66 2 94960470 94960490 GAAGTGATGGCGTTGATGG 59 94960520 94960538 CACCAACAATCCCAACTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AC131848.1 ENSRNOG00000005898 ENSRNOT00000007732 2 1 1 80 3 76154753 76154775 TCTCCATCTACTCTGTTACTCTG 59 76154813 76154837 ACATGGGAATGTGTAAAGGAC 58 Novel Rattus norvegicus 81 AABR07008805.1 ENSRNOG00000046150 ENSRNOT00000071652 1 1 1 60 2 74714060 74714078 CCGTCCCTCAGTATACCTG 59 74714101 74714120 TTCTGTCATGGTGATCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 3 1 1 60 17 79036238 79036257 TAGAACCTCCAAACAAGCTC 58 79036280 79036298 GCATTATCACCCGTGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066826.1 ENSRNOG00000039790 ENSRNOT00000061048 2 1 1 87 9 17946115 17946133 ATTCAAGTCCCAGCCTCAG 59 17944134 17944156 TATACTGCTGGCCCATCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058466 ENSRNOT00000090935 3 1 1 62 11 52753791 52753809 CAGAGAAGACTAGCATGGC 58 52753835 52753853 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044338 ENSRNOT00000069605 2 1 1 64 7 32471367 32471388 TGCACTGGTTACATCTAATCTC 58 32471324 32471342 TTTCTCCCAGTCAGGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054407 ENSRNOT00000085960 1 1 1 61 7 6637741 6637762 GTGTCACATGTAAATGACAGAG 58 6637781 6637802 TTCATAGATCAGACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053195 ENSRNOT00000082013 2 1 1 61 7 102032216 102032234 ATGCTTACTTTGGCAGCAC 59 102032173 102032191 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056664.1 ENSRNOG00000041366 ENSRNOT00000063119 2 1 1 60 7 35249845 35249865 CAGAGGCTTATAGATCCAAGC 58 35249887 35249905 CAGCTTCTGAAGCCTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057412.1 ENSRNOG00000050895 ENSRNOT00000074506 1 1 1 61 7 70020530 70020548 GTATTGGCCTTGGAGTCAG 58 70020487 70020505 CATGCATATTGGACGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056776 ENSRNOT00000077641 1 1 1 60 7 53840683 53840704 GGAAACAATAGATTAGCTTGGC 58 53840644 53840663 GACATGCTCCTCAGATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057675 ENSRNOT00000078911 2 1 1 60 9 23374410 23374429 CCTGGATGTAATGACCTCCA 59 23374449 23374470 CCATAAATCATGCAATCCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 2 1 1 60 10 23480842 23480863 GCTAAACATTCGCTATAGTACG 57 23480803 23480822 ACCCAGGTAAAGAACTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059018 ENSRNOT00000087304 3 1 1 60 7 18457 18475 TTAGCGGTGGATCACTTGG 60 18496 18517 ATTAATTCTTGCAGCTAGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 1 1 1 60 1 134921748 134921768 AGCCATACAGGTAAGATTCAG 57 134921790 134921808 ATAGTCCAGAGCAAAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053959 ENSRNOT00000087145 2 1 1 60 10 74757917 74757940 CGTTACTAGAGAAGTTTCTCTGAC 59 74757959 74757977 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056239 ENSRNOT00000088700 1 1 1 60 4 33537182 33537201 TTGATTCAGACTGTCCACCT 59 33537141 33537161 ATGTATGGGATGTTGAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058553 ENSRNOT00000088067 3 1 1 60 7 48027388 48027406 AGCACAGTGAAGTATGCCT 59 48027346 48027366 TGATTCAATCCCACATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056885 ENSRNOT00000083789 3 1 1 60 7 38987880 38987899 GAGCCTATGTGTATGCTCAG 58 38987839 38987860 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.2 ENSRNOG00000056335 ENSRNOT00000081214 1 1 1 60 2 209834771 209834789 GGAAGACAAATTGGGCCAG 59 209834812 209834832 CAACTCTAGCTGCTTCTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 2 1 1 60 10 34184395 34184416 GAGAAGATTAGCATTGTCCCTG 59 34184356 34184374 AATATGGACCGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052844.1 ENSRNOG00000051607 ENSRNOT00000045225 1 1 1 80 3 78508607 78508628 TCTCTTAAGACTCAAAGTCAGG 57 78508547 78508566 AAAGAGGATGACAACCAGG 57 Novel Rattus norvegicus 81 SNORD86 ENSRNOG00000061010 ENSRNOT00000085750 3 1 1 60 4 10161531 10161552 AGAGCTCCCTAACTTACATAGG 59 10161573 10161591 TCCAGACACCATGACTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055698 ENSRNOT00000088463 2 1 1 60 4 119866366 119866384 GTGGTGCTACAGAAGGGAG 60 119866324 119866345 CAAGTTCTATAGCAGACACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002351.1 ENSRNOG00000060136 ENSRNOT00000091103 1 1 1 80 1 71766445 71766465 CAGTACCCAGACAAGAAACTG 59 71766505 71766961 CTTGAACCAGACCTTGATCTC 59 Novel Rattus norvegicus 81 AABR07012763.1 ENSRNOG00000057707 ENSRNOT00000086252 3 1 1 89 2 206842701 206842719 CTTGTTCCTTATGGCTGCC 59 206828478 206842648 GAACCCTGTAAGCATGGGT 60 Novel Rattus norvegicus 81 AABR07012587.1 ENSRNOG00000002223 ENSRNOT00000003022 3 1 1 61 2 198591468 198591486 CAATGGCTCTGACAGTTGG 59 198591425 198591445 GAATGCAGCCATAGCTAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 3 2 2 80 20 4540678 4540788 ATGATGGAGCGGGATACTG 59 4540616 4540635 TGTCTTCAAGACGGTACTGG 60 Novel Rattus norvegicus 81 AABR07058406.1 ENSRNOG00000059955 ENSRNOT00000078097 2 1 1 60 7 114690412 114690433 CAAGTTCATCAAGAGGATGGTG 59 114690373 114690391 CAGCTCCTCCCACTTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0890.5 ENSRNOG00000051024 ENSRNOT00000075953 1 1 1 148 10 89174623 89174641 GAACCTTTCTGCTGTGCTG 60 89174752 89174993 GGCTGTAACGTAAAGAAGGG 59 Novel InUTR Rattus norvegicus 81 AABR07071223.1 ENSRNOG00000037129 ENSRNOT00000056005 2 1 1 60 8 105526689 105526710 TTTGAACTAAGAGATCCACCTG 58 105526731 105526749 TAGTGCACGCCTTTAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054384 ENSRNOT00000082178 1 1 1 60 8 55307071 55307091 TTCCTAACACTGGAACAACAC 59 55307110 55307131 CTTGCATGGCATAATTATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067491.1 ENSRNOG00000047654 ENSRNOT00000075738 1 1 1 135 9 49024277 49024295 AATCAACAAACGCTCCCTG 59 49024395 49024413 CATGTTGTGATGGAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044601 ENSRNOT00000069868 1 1 1 60 8 111941328 111941346 CCTGAATGTGCCTGATCTC 58 111941286 111941304 TCCCATCCAAGTCCTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025900.1 ENSRNOG00000049606 ENSRNOT00000074244 3 1 1 80 16 54608583 54608604 CCAAAGCAAACACTGAATATCC 58 54608649 54608667 AGTCTTCCAGCATCATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052755.1 ENSRNOG00000009648 ENSRNOT00000012787 2 1 1 60 3 73284359 73284379 ATTTCCTACATTGGGTGTCTG 58 73284317 73284337 AATATTCAGTCAAGAGCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030630.1 ENSRNOG00000052124 ENSRNOT00000077567 2 1 1 60 10 96661762 96661781 CAACTCAAAGTACCTCCTGC 59 96661803 96661822 TAGCTGTTTCACAGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000054517 ENSRNOT00000084929 3 1 1 61 1 22759974 22759993 CTAGTCTGCTTAGCTCTGTG 58 22760016 22760035 CATGGCGTTACTATTGCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 2 1 1 67 7 380960 381671 GTAAGTTCAGCTCCCAGAGG 60 381701 381719 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC113635.3 ENSRNOG00000061289 ENSRNOT00000086836 3 1 1 82 2 209849991 209850011 CAAGGATCAAAGGGAATTGAG 57 209850055 209850089 ATTAGGTTACGGCCAACAG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035686 ENSRNOT00000053809 3 1 1 60 1 71911859 71911880 AGAATGTGCTTGATCTTGTCTG 59 71911898 71911919 AAGTACTATCTAGCCTTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114017.2 ENSRNOG00000061210 ENSRNOT00000078747 2 1 1 80 10 38827093 38827113 TTTAGTCAACAAGGCTTGGG 58 38827032 38827052 TTCTGTCGGAAAGAAATTCGG 59 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000081704 2 1 3 101 20 4873103 4873333 ACAATGAATGGGCTTTGCC 59 4873020 4873038 AGTAAGGGAGCAGAAACCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041053 ENSRNOT00000062806 1 1 1 60 8 39495990 39496011 CATCCTGGATATGTCTGATCTC 58 39496032 39496050 CATCCAAGCACTAACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000051651 ENSRNOT00000081581 2 1 1 60 8 109746316 109746337 ATCTCATCTCAGAAGCTAAGCA 59 109746358 109746376 TGTGGTGCTTTCTCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071431.1 ENSRNOG00000046630 ENSRNOT00000073748 1 1 1 60 8 114847383 114847401 CCTCACTGTTCTCTATGGC 57 114847425 114847443 ATCCCTATATGAGCGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059281 ENSRNOT00000079799 3 1 1 67 8 78579450 78579472 CCATACTACCCTGAACATATCTG 58 78579405 78579425 ATTAAGAAAGCCCAACCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050354.1 ENSRNOG00000050976 ENSRNOT00000075541 1 1 1 88 5 162138730 162138748 CGGTCGAGATCAAGAAAGG 58 162138654 162138676 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AABR07070810.1 ENSRNOG00000061579 ENSRNOT00000082158 2 1 1 60 8 85489875 85489893 AGATTGTCAACATTGCCCG 59 85489916 85489935 GTTCCAGAAAGTTCTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026300.1 ENSRNOG00000050771 ENSRNOT00000073351 1 1 1 97 16 71075401 71075419 CTTCTTGTCACAACAGGCA 58 71075321 71075341 AATAATTCGGAATGCACGGA 58 Novel Rattus norvegicus 81 AABR07045632.1 ENSRNOG00000031969 ENSRNOT00000041101 1 1 1 99 20 54072039 54072060 TTACCTTCAGAATTACAGGGAG 57 54072120 54072139 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128114.1 ENSRNOG00000060230 ENSRNOT00000086101 1 1 1 81 16 61843358 61843376 AGCTTCCTGGAACTCAGTC 59 61843292 61843311 TTGCAGGTATTGTCCCTGG 60 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000058310 ENSRNOT00000082291 2 1 1 60 3 39210132 39210153 CAACTATCAGACAAAGACATGG 57 39210093 39210112 TTCTAGGTTTCAAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000051455 ENSRNOT00000084450 3 1 1 60 3 148345001 148345021 ACATGCTACAGTGATGAAGGA 59 148344961 148344983 ACTACTCAACCTCTTCTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 3 1 1 60 3 153521752 153521773 AGTACAGTGCAGTACCATACAG 60 153521791 153521812 TGTATTGTACTGCACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 2 1 1 65 18 2189092 2195793 AGTAGGTGAAGAGGTTGAGTG 59 2195820 2195838 ACTCAGAGCAGTTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014745.1 ENSRNOG00000060277 ENSRNOT00000089286 3 1 1 82 14 29645518 29650842 CAAGAAACGACAAGGTGGG 59 29645454 29645472 TTGGGAAAGAGGATGTGCA 59 Novel Rattus norvegicus 81 AABR07046713.2 ENSRNOG00000061676 ENSRNOT00000080044 2 1 1 102 5 2739368 2741227 GCTCTTCAGGACGTCTGAG 60 2741293 2741311 CTGGACTATCTCCTTGCCG 60 Novel Rattus norvegicus 81 AABR07031251.1 ENSRNOG00000053296 ENSRNOT00000090524 3 1 1 67 18 5839157 5839175 GTAGAGACACTGTGGCTGG 60 5839003 5839126 GGGTTGTTCTGAAGACTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC116236.2 ENSRNOG00000059729 ENSRNOT00000089937 2 1 1 84 14 34329142 34329516 GTCTCTGAATGGGTCCAGG 60 34329558 34329582 GTAGGAATTCAACATAGATCCACTG 60 Novel Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 3 1 1 84 18 7118600 7118784 AAGACAACACTGGGTCAGG 60 7118832 7118850 CTATGTTCTCCTGATCGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC127076.2 ENSRNOG00000059601 ENSRNOT00000077387 1 1 1 81 5 5056098 5056116 ATTCGTGCTGCAGAATCAC 59 5056158 5064254 TGCTGTTATCTCGAACATAAGC 59 Novel Rattus norvegicus 81 AC111831.1 ENSRNOG00000054592 ENSRNOT00000077392 1 1 1 80 6 8176333 8201775 TAGTCGTCAAGTATGTGCTG 58 8176272 8176290 GGAGTCAGGGAAACAAAGG 58 Novel Rattus norvegicus 81 AABR07015358.1 ENSRNOG00000058705 ENSRNOT00000089606 1 1 1 93 14 53046364 53046382 TGCCACGTGTTAATTAGCA 58 53046439 53049437 AAAGTCTCTGCCTTGAGGT 59 Novel Rattus norvegicus 81 AABR07000385.2 ENSRNOG00000058425 ENSRNOT00000082588 2 1 1 181 1 11840126 11840145 AAATACCATCCCAGCTAGCA 59 11837797 11837815 CCTGGACATCAGAGACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029768.1 ENSRNOG00000052088 ENSRNOT00000081115 1 1 1 85 10 49359602 49361410 TCTCATAGTGAGAATGCACCA 59 49359537 49359555 CTTCCATGTCTTTGCTGGC 60 Novel Rattus norvegicus 81 AABR07015517.2 ENSRNOG00000058688 ENSRNOT00000078204 1 1 1 60 14 61116720 61116738 AAGCCTGCCAAATCCTAGG 60 61122446 61122464 ATTAGGCCTTCTCCACGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015517.1 ENSRNOG00000058054 ENSRNOT00000088045 2 1 1 80 14 61298792 61298811 AAGAAACAGAGTCACTGCAG 58 61298854 61299416 AGAGTACCACCATGATGCA 58 Novel Rattus norvegicus 81 AABR07030034.1 ENSRNOG00000056642 ENSRNOT00000086672 3 1 1 80 10 63551055 63551074 CTATCTCCTGATCACCTGGG 59 63548720 63551015 CTATATGGGTCCTGGAAGTACG 60 Novel Rattus norvegicus 81 AABR07061155.1 ENSRNOG00000058418 ENSRNOT00000083209 1 1 1 80 4 107202352 107209826 GTAGTAGGAAGATCTTCAAAGCC 59 107209862 107209884 GTACCTTCCAAGGAAAGTTACAG 59 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 1 1 1 60 5 38572347 38572366 CATCAACATTGAAGTGTGCT 57 38567864 38572326 ATGACTTCCAGTAGTTCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000081876 1 1 2 83 1 14938547 14945677 CGCCCAGAATTCAAGACAC 59 14945724 14945742 CAGTCACAAACCAGCTTCC 59 Novel Rattus norvegicus 81 AC136053.1 ENSRNOG00000057719 ENSRNOT00000081461 3 1 1 90 1 15247453 15247472 CATTCCCAAGGTCTTTGGAC 59 15247525 15255751 CAGCAACAACCTGAAACCA 59 Novel Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 3 1 1 74 10 78339985 78340602 AACCAATAGCCCAATGGTG 58 78339929 78339947 AGAGTAATGCACTGTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 1 1 1 76 5 58022472 58031710 AACCAGGCTTCTGGAAGTC 60 58022414 58022432 TCAAGTGCTCAAGACTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072414.1 ENSRNOG00000054929 ENSRNOT00000084998 3 1 1 61 14 80905146 80905164 AGATGCTCAGCACTGATCC 60 80910809 80910827 TGCCTAGTCTCTTTCCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048321.1 ENSRNOG00000057406 ENSRNOT00000081275 1 1 1 80 5 72892383 72892401 CATTTCAGACTCCTGGGTG 58 72892445 72929271 ATAAGGTCCCAGGACATCG 59 Novel Rattus norvegicus 81 AABR07016056.2 ENSRNOG00000060971 ENSRNOT00000084512 3 1 1 62 14 92960999 92961017 ATGTCGCATGAATCGTCTG 58 92951739 92951758 TGCAGATAGAGCTGTTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061455.1 ENSRNOG00000051463 ENSRNOT00000085346 2 1 1 101 4 125646356 125655285 CATCTAGCACAAGCGATGG 59 125655350 125655368 AGTGACAGTGGTGAGTGTG 60 Novel Rattus norvegicus 81 AABR07061455.1 ENSRNOG00000051463 ENSRNOT00000085346 3 1 1 103 4 125646356 125655285 CATCTAGCACAAGCGATGG 59 125655352 125655370 ACAGTGACAGTGGTGAGTG 60 Novel Rattus norvegicus 81 AABR07016578.1 ENSRNOG00000054531 ENSRNOT00000089463 3 1 1 110 14 105141425 105141443 CCAGGAAGACACTAGGTGG 59 105138323 105138341 GCACAGAGCTTAAGAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000725.1 ENSRNOG00000055637 ENSRNOT00000090824 2 1 1 82 1 24826734 24828001 GAACAAGAGCTCCTACTTCAG 58 24828042 24828063 TGTGCAGTAATGACATTACCTC 59 Novel Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 2 1 1 65 10 93238170 93238191 TGTCTTTGCAGATGAAATGGTC 60 93238217 93239917 TTTCCTGTGAGCAACTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016621.1 ENSRNOG00000056139 ENSRNOT00000077722 3 1 1 82 14 107263332 107264530 GGATGCCTACTCAAGATCCC 60 107264574 107264593 CCATAGCTGGGTAGAGATGG 59 Novel Rattus norvegicus 81 AABR07061807.3 ENSRNOG00000054089 ENSRNOT00000080989 2 1 1 81 4 146300475 146306403 AACAAAGACAGTGCAGATTCG 60 146306446 146306464 GAGGGAGTATCCCAAGCAG 59 Novel Rattus norvegicus 81 AC142421.2 ENSRNOG00000061518 ENSRNOT00000081097 2 1 1 80 1 32240545 32240563 GAGATAAGATGCTGGCACC 58 32240607 32244063 GTTCCAGAGAAACCTAGGC 58 Novel Rattus norvegicus 81 AABR07001018.1 ENSRNOG00000053323 ENSRNOT00000089213 3 1 1 80 1 33794838 33794856 GTCAGGCATTGACTAAGCC 59 33794895 33796997 GTAGGCAATTCTTAGATTCGAGAC 60 Novel Rattus norvegicus 81 AABR07049292.1 ENSRNOG00000058472 ENSRNOT00000088984 2 1 1 80 5 114338446 114338465 CCTGTTAGAGAATGAGCCCA 59 114205283 114338406 GTAGATTTCCTTCTATCTGCGC 59 Novel Rattus norvegicus 81 AABR07001018.2 ENSRNOG00000054020 ENSRNOT00000088968 3 1 1 98 1 33967028 33979875 CCTCCAAGAAGTTGAAGGTC 58 33966949 33966970 GGATAGCTTTGAACTCATTCAG 57 Novel Rattus norvegicus 81 AABR07001025.1 ENSRNOG00000057928 ENSRNOT00000091983 1 1 1 80 1 34269672 34271213 CAGCCTACAATTGGTTCTCAC 59 34269612 34269630 GCAGACTCGGACATAACCT 59 Novel Rattus norvegicus 81 AABR07049389.1 ENSRNOG00000054826 ENSRNOT00000091586 2 1 1 61 5 120330034 120330052 TTAGATCGAAGCTCCCAGG 59 120325122 120325140 GGTGTTCTTCCTCTGTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017176.1 ENSRNOG00000057844 ENSRNOT00000084363 1 1 1 80 15 15159557 15185083 CGATGAAAGGAACCCAACTC 59 15159496 15159515 CCATTGTATGTCACAGGTGG 59 Novel Rattus norvegicus 81 AABR07030834.1 ENSRNOG00000052569 ENSRNOT00000080833 2 1 1 85 10 105452801 105456186 CTAATTACCGACATACACTCCTG 59 105452738 105452756 TCAGTTCTCCATCAGAGCG 59 Novel Rattus norvegicus 81 AABR07030854.2 ENSRNOG00000051943 ENSRNOT00000082347 2 1 1 85 10 106573962 106573981 TAAAGATGGGAGGTAGGGTC 58 106570847 106573914 AAGATCATGCCATTCCTGG 58 Novel Rattus norvegicus 81 AABR07049508.1 ENSRNOG00000058843 ENSRNOT00000087485 3 1 1 88 5 124924697 124928628 CAGAAACCCAAGTTTGATCCT 59 124924629 124924647 GAGCACAAGTCAGCAAAGG 60 Novel Rattus norvegicus 81 AABR07001068.1 ENSRNOG00000058077 ENSRNOT00000081636 1 1 1 80 1 37059741 37059759 TATGTCTGGTTGCCATGGG 60 37059802 37162360 AGAGGAAGAATGACACCTGG 59 Novel Rattus norvegicus 81 AABR07049520.1 ENSRNOG00000058765 ENSRNOT00000088258 1 1 1 89 5 125571208 125571226 GAAGTGAAGGGTCAGACTG 58 125567384 125571155 ATCTCATGTTCAGGGAGCT 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086932 3 1 3 84 1 38882295 38882314 ATTCAGGTCTGACAACACTG 58 38864918 38882248 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 2 1 2 72 15 20340997 20341997 AAATGTGGGTTTGGTGTGC 60 20342033 20342051 ATGGTAGGTCTGAGCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017270.1 ENSRNOG00000057155 ENSRNOT00000084051 2 1 1 80 15 20609661 20609681 GAATACCAAGACAATGGCTGG 59 20609722 20611503 GCGGACATCTTGAAGATTGG 59 Novel Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 3 1 1 60 4 176075843 176076536 AGCCAGAACCTCTACATCC 59 176076560 176076578 CACAGTTCTTGTAGTGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017626.1 ENSRNOG00000058996 ENSRNOT00000084265 1 1 1 84 15 29388010 29388251 TTTGTCTGGATGTATTGTGGC 59 29387946 29387964 GTCCAGGGTGACTTCTTCC 60 Novel Rattus norvegicus 81 AABR07001464.1 ENSRNOG00000053052 ENSRNOT00000089275 2 1 1 80 1 45823385 45826148 TCCAGCATAAACAAGGCCT 59 45823323 45823342 GAGTCACTGCGTAATCAGGA 60 Novel Rattus norvegicus 81 AABR07001477.1 ENSRNOG00000058103 ENSRNOT00000086348 2 1 1 95 1 46741848 46744048 ATACAAAGGGTTAAAGGAAGGG 58 46741774 46741792 GACATTGTTGCATGCTAGC 58 Novel Rattus norvegicus 81 AABR07049799.1 ENSRNOG00000054301 ENSRNOT00000083974 2 1 1 83 5 138678470 138678488 GAGTGCAGTCCCATTTCAG 59 138678535 138684797 TGTGATCTGACACCAGGTG 59 Novel Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 1 1 1 101 6 10767023 10767041 CTTCTTCCTCATCAGGGCC 60 10765966 10766960 GAATACAGGAATTGCAAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 3 1 1 102 6 10767023 10767041 CTTCTTCCTCATCAGGGCC 60 10765965 10766960 TGAATACAGGAATTGCAAACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001591.1 ENSRNOG00000051938 ENSRNOT00000082276 3 1 1 86 1 53842124 53842310 CTGTTCATCCAGGAAAGAAGAG 59 53842357 53842375 TAGCCTTGCTGTGCTAGTG 60 Novel Rattus norvegicus 81 AC097037.4 ENSRNOG00000059192 ENSRNOT00000090409 1 1 1 80 15 32963080 32963098 GGCTGTCAACAGTTGATGG 59 32963142 32966056 TTTCAAATCGCTGGACACC 59 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000087580 1 1 2 60 5 143194237 143194257 GAAGCTAGTTGCTAGGAAGTC 58 143194662 143194681 CAAAGTGTTCTTCAGCAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001640.1 ENSRNOG00000055577 ENSRNOT00000082407 2 1 1 107 1 54500880 54500899 CAACATCTGCCCAAATTGGA 59 54499817 54499835 CTGATGGAGACTGTGAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001640.1 ENSRNOG00000055577 ENSRNOT00000082407 3 1 1 108 1 54500880 54500899 CAACATCTGCCCAAATTGGA 59 54499816 54499834 TCTGATGGAGACTGTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.2 ENSRNOG00000058146 ENSRNOT00000078631 1 1 1 105 18 47959241 47959259 AAAGTGTCTCAGGGAAGGA 58 47953514 47953534 CTTTCTTCCATTCTTGCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.2 ENSRNOG00000058146 ENSRNOT00000078631 2 1 1 106 18 47959242 47959260 CAAAGTGTCTCAGGGAAGG 58 47953514 47953534 CTTTCTTCCATTCTTGCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050061.1 ENSRNOG00000058693 ENSRNOT00000077103 3 1 1 83 5 149666787 149707857 CCTGTAGAGGTGGAGAAAGG 59 149666723 149666741 CTGGTGTCAGTCTTCCCTG 60 Novel Rattus norvegicus 81 AABR07001700.2 ENSRNOG00000059261 ENSRNOT00000082731 1 1 1 82 1 55376026 55377018 TGGCTAAGGAATGGCTCTG 60 55375962 55375981 TTAAGTGAAAGTTGGCCGTC 59 Novel Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 2 1 1 80 15 41619170 41619189 CATGTTGTAAAGTGGGAGGT 58 41617403 41619128 TGTATTGTTCCTTCTGGGAG 57 Novel Rattus norvegicus 81 AABR07063581.1 ENSRNOG00000058114 ENSRNOT00000084534 1 1 1 80 6 36081901 36081919 GAGAAGCCTCTCATGTGGT 59 36079035 36081861 GGAGGCTCTATCCTCTAAATCAG 60 Novel Rattus norvegicus 81 AC118858.2 ENSRNOG00000060555 ENSRNOT00000088774 2 1 1 81 18 51713466 51716659 CCATGACAGAGAAGTCTTAAAGAG 59 51716697 51716717 GTACCTTGGTTGACTTTGGTG 60 Novel Rattus norvegicus 81 AABR07050283.1 ENSRNOG00000054390 ENSRNOT00000082800 2 1 1 80 5 159210093 159213915 TACATAAAGGGAGCAGCCA 58 159210031 159210054 TCTCCTGGGTATTATTTAGGTCAG 59 Novel Rattus norvegicus 81 AABR07063636.1 ENSRNOG00000052000 ENSRNOT00000078407 3 1 1 86 6 38339525 38339982 TTATCAGGTAGCCACAAGAGG 59 38339459 38339477 CAGACTGAGTTGGCTAGGA 58 Novel Rattus norvegicus 81 AABR07050484.1 ENSRNOG00000061404 ENSRNOT00000092120 3 1 1 100 5 166894647 166894667 TAACTCCTAGTCTGTGCTGTG 59 166894729 166896783 GGTAATGCCAAACCGTCTC 59 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 3 1 1 60 6 45023557 45024524 GGATTTGTGAGTCACTATCCA 58 45024544 45024564 GAGTAACTGCTCTCAATTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051218.1 ENSRNOG00000059773 ENSRNOT00000079427 1 1 1 80 3 1644002 1645308 GAGACCTCTAGTAAGGTTTCCA 59 1645346 1645367 ACTTACAGACTTGATTCCAGAC 58 Novel Rattus norvegicus 81 AABR07002848.2 ENSRNOG00000055681 ENSRNOT00000087482 2 1 1 64 1 86857682 86857700 AAGCTGCCATACTCCTTGG 60 86858398 86858416 TCTCAGGCATCTGTCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002868.2 ENSRNOG00000057222 ENSRNOT00000080831 3 1 1 82 1 87560525 87562808 GAATCATGGCTCATAGTATGGTG 59 87562850 87562868 GTAGGAACTCAGGCACTCC 60 Novel Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 2 2 2 80 3 4734835 4735903 ATCATGAGGAAGGTGACCAC 60 4735946 4735964 GGTCCTCTTCCTTACTCGC 60 Novel Rattus norvegicus 81 AC114093.2 ENSRNOG00000054926 ENSRNOT00000079653 2 1 1 128 18 74862367 74862385 GTTTCACCGTCATTGTTGC 58 74862477 74863541 TCTCCTAACTTGCTGGTCG 59 Novel Rattus norvegicus 81 AABR07002902.1 ENSRNOG00000056429 ENSRNOT00000081905 2 1 1 86 1 88632221 88634886 CTACAGAGACCGAAGGACTC 59 88634935 88634953 CTACCTGAAGGACCATGGC 60 Novel Rattus norvegicus 81 AABR07032688.1 ENSRNOG00000061015 ENSRNOT00000081164 1 1 1 103 18 77177483 77177501 AAAGTACCAAGAGCGATCC 57 77174829 77177416 TTTCAGTTCCCTTCTGCAG 58 Novel Rattus norvegicus 81 AABR07002910.1 ENSRNOG00000061774 ENSRNOT00000079616 3 1 1 81 1 88974811 88974927 ATACCATCATGACCAACCTCC 60 88974970 88974988 ACATCAGGGCTGGATTCAG 60 Novel Rattus norvegicus 81 AABR07051370.1 ENSRNOG00000052882 ENSRNOT00000080029 3 1 1 61 3 6809815 6809836 GCTCTGATTTATAAAGTCAGCG 58 6809143 6809161 ACATGCCCTAGGTACATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032724.1 ENSRNOG00000053886 ENSRNOT00000077887 3 1 1 103 18 78289059 78289078 AGAGATAGGAAGCAGTGGTG 59 78288535 78288553 TCCAAGGCCTGTGTTACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064584.1 ENSRNOG00000056792 ENSRNOT00000085837 2 1 1 63 6 86022848 86022866 CTGAGAGTAGACTGCCTGC 60 86020057 86020078 ATCAATATTCTCATCTCCGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 1 1 1 60 6 87874933 87874953 AGAAATGGCAACTTCATCTCC 59 87871434 87871453 AGAAGCTTGAGATCACAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 1 1 1 94 6 90259917 90259935 CTCCACTGTCAGTCAAGCA 60 90255951 90259861 AGGAGTTCTGCTTAGTACCAC 59 Novel Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 3 1 1 95 6 90259917 90259935 CTCCACTGTCAGTCAAGCA 60 90255950 90259860 CAGGAGTTCTGCTTAGTACCA 59 Novel Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 3 1 1 60 3 17198621 17198641 TCATCAGCTTGTGATTTCCTG 59 17198663 17208064 ACTTGTTGTGGATGCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 3 1 1 80 3 21379338 21379357 TCCCATCTGGATGAAGAGGA 60 21375980 21379297 CTCCTTCAGAGTCATCTTCCC 60 Novel Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 1 1 1 61 1 97131262 97133592 ACAGTGTTGAAACGAGCTG 59 97133617 97133635 TTCTGGAATCCACCAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC120732.1 ENSRNOG00000056508 ENSRNOT00000087222 2 1 1 65 11 31269699 31269717 CATACTCAAAGGCCTGCCT 60 31270277 31270295 CAGTGCTTAACAGCAAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.1 ENSRNOG00000053695 ENSRNOT00000078384 2 1 1 80 3 30280791 30283066 GGAAAGAAGCCAGGTTTGG 59 30280729 30280748 CAGTTTGGTTGACAGTGAGC 60 Novel Rattus norvegicus 81 AABR07003310.3 ENSRNOG00000056597 ENSRNOT00000091414 1 1 1 80 1 105045464 105046162 GGAGTCAGGAATGAAGGCT 59 105046206 105046224 GGAGAGGACGATGACTCTG 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 1 2 2 85 9 604680 605041 TACTTGCTCTCCTGGACCT 60 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07003449.1 ENSRNOG00000051655 ENSRNOT00000089769 3 1 1 60 1 110026784 110028035 TCTCCATCAGTTGGAATGTCC 60 110028056 110028075 AAATCTGATTGGCAAGAGCT 58 Novel DesignRelaxed Rattus norvegicus 81 AC108574.2 ENSRNOG00000057903 ENSRNOT00000086178 3 1 1 80 11 60048985 60049501 CCTCAAGAATGCCAATAAGAGTC 60 60049537 60049559 GCCACCATGTAATAGATTCTGTC 59 Novel Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 1 1 1 60 11 64195356 64195377 TCTGTAAACTACTACCGAAGGA 58 64195397 64225617 CCTTTGGGTAGGAGAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 1 3 3 80 6 125287242 125287260 TGGATTGATGACAGCCCAG 60 125279171 125287201 TGAGTTGTATGAGCTGATACCC 60 Novel Rattus norvegicus 81 AABR07003841.1 ENSRNOG00000057034 ENSRNOT00000087187 3 1 1 94 1 118977813 118977831 CATGAAGACAAGCCCATCC 59 118976539 118976559 CCTCCGTATTGTCTAGAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065406.2 ENSRNOG00000060830 ENSRNOT00000082112 3 1 1 99 6 125904609 125910924 AATCTACTTCAGGCAAAGTGG 58 125904530 125904548 AAAGAACTTGCTCTGAGGG 57 Novel Rattus norvegicus 81 AABR07004033.1 ENSRNOG00000058845 ENSRNOT00000077426 1 1 1 82 1 122881550 122889159 AGAACCCAGGAACCAAGAC 59 122889204 122889223 TGGACACAGATGAATGTGCT 60 Novel Rattus norvegicus 81 AABR07072876.1 ENSRNOG00000052074 ENSRNOT00000082826 2 1 1 82 3 62290081 62292723 AAGAAAGGACACCAGAGCT 59 62290017 62290037 TCTCTTCTGATAACTAGGCCC 59 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 3 1 1 180 3 62621911 62622707 TTCTTCATGAGACGGCTGG 60 62621749 62621768 CCATAAAGTGTTGGGTACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021760.1 ENSRNOG00000059079 ENSRNOT00000079623 3 1 1 64 13 90160403 90160421 TACAGGATCTCTGCTCCTC 58 90167168 90167190 GATCAGATCACTAGTCGAATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052643.1 ENSRNOG00000056573 ENSRNOT00000089225 2 1 1 99 3 67676391 67676411 AGAACCGATTTCCAGACAGAG 60 67676472 67683433 GTCCATGAAACCAAAGCCG 60 Novel Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 2 1 1 93 11 83801330 83814221 AAATCATGGCCTGAAGCTG 59 83814277 83814296 TATTATTGCCCTGCCATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052686.1 ENSRNOG00000060480 ENSRNOT00000086000 1 1 1 104 3 69246656 69267730 GAGACTCCTGAGAGGTGGA 60 69246570 69246589 CCATAATCCATTTGTGGCCC 59 Novel Rattus norvegicus 81 AABR07034718.1 ENSRNOG00000057994 ENSRNOT00000087203 2 1 1 60 11 85053719 85053739 TTTATTGGGTTCTTGTGGCTC 59 85053872 85053890 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 2 1 1 63 13 95698469 95702830 TAAAGGTCTCCGTTCACAGG 60 95698425 95698443 TTACTTCTTGAGACCGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034795.1 ENSRNOG00000052746 ENSRNOT00000091222 2 1 1 81 11 89832358 89834257 GGTAATAAAGCTGAAACACGG 58 89834297 89834318 TGATCATTGAGGTCTTCTACTC 57 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 3 2 2 70 1 131386721 131431805 GGTGATACTACAACCACTGAC 58 131386671 131386689 GAATCTCCCAGACCTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000089751 1 1 2 80 13 101998640 101999232 CCCTTCAGTGAGGTGTCAG 60 101999275 101999294 AGGAGTAGACAAGAAGCCAC 59 Novel Rattus norvegicus 81 AABR07052788.1 ENSRNOG00000058334 ENSRNOT00000078139 1 1 1 80 3 75235996 75239116 TGATTAAGACCCTTTATAGGTCCTG 60 75235940 75235959 TATTCTCACCCTTTGCCTGG 60 Novel Rattus norvegicus 81 AABR07022037.1 ENSRNOG00000056464 ENSRNOT00000079252 2 1 1 80 13 103719028 103719049 TTAGATGTTCCTTTGGGAAGTG 58 103716429 103718989 CTGTATTCTGGGATAACCTGG 58 Novel Rattus norvegicus 81 AABR07022039.1 ENSRNOG00000054076 ENSRNOT00000091867 3 1 1 73 13 103758525 103758543 CACTTGGCATTTGTTGCAC 59 103758578 103770787 GACTCCACATCAAACAAAGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07004241.2 ENSRNOG00000055864 ENSRNOT00000077906 1 1 1 80 1 132497866 132503422 CCATGATTCTCTTAGACTCCAC 58 132503462 132503481 GCAGGGAAAGATAGTCACAG 58 Novel Rattus norvegicus 81 AABR07004241.2 ENSRNOG00000055864 ENSRNOT00000077906 3 1 1 80 1 132497868 132503424 ATGATTCTCTTAGACTCCACGA 59 132503464 132503483 TTGCAGGGAAAGATAGTCAC 58 Novel Rattus norvegicus 81 AABR07035008.2 ENSRNOG00000054841 ENSRNOT00000087032 3 1 1 80 12 3250086 3251119 GAAGAGGAGGACTTCCTCC 59 3251163 3251181 TTCGGATACAGCAATCCAC 58 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 3 1 2 106 12 3807801 3807928 GTCATGAAGGCATACTCCCT 59 3808637 3808655 CAGAAGGCCTCTTCCTCAG 60 Novel Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 2 1 1 61 12 6592747 6602710 CTCTATGGCGATGACCAGG 60 6592704 6592726 AGTAGTTCACCTACAGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053118.1 ENSRNOG00000058450 ENSRNOT00000084353 1 1 1 98 3 92139499 92139812 CATAATTGGCATCAAGCAACAG 59 92139871 92139889 AGTGATGGAAGGACTGTCG 59 Novel Rattus norvegicus 81 AABR07024444.1 ENSRNOG00000051437 ENSRNOT00000091395 2 1 1 82 16 328512 332793 CCTGGCCAGATTCAAAGGA 60 332838 332857 GACAAATGTAACCATGGCCC 60 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000087456 3 1 2 82 16 450871 460659 TCCTACAGAGAAACAGAAAGG 57 450809 450828 ATTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07024468.1 ENSRNOG00000060607 ENSRNOT00000089982 1 1 1 121 16 535766 569367 CCTATGAAGGCCTTATAGATTCAC 59 535668 535686 ACCCGAAAGAGATTTCCCA 59 Novel Rattus norvegicus 81 AABR07065933.1 ENSRNOG00000057960 ENSRNOT00000091437 1 1 1 80 6 146979395 146979413 AGAAACAATCAGCCAGACC 58 146978117 146979351 CTGATGAAATCACCTGCCT 58 Novel Rattus norvegicus 81 AABR07053437.1 ENSRNOG00000059542 ENSRNOT00000091667 2 1 1 88 3 107017235 107017254 AGAAACAAGAGCAAGCTGAG 59 107015467 107017186 TTCCTGTAACAAATGGAAGCC 59 Novel Rattus norvegicus 81 AC117065.1 ENSRNOG00000052121 ENSRNOT00000077316 2 1 1 86 12 16240738 16240756 GGCTTGGAAAGCAAGACTC 59 16240556 16240688 CTAGAGCACTCGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07024669.1 ENSRNOG00000051588 ENSRNOT00000090991 3 1 1 84 16 11402198 11404155 AGATAAACAGGAAGGCAGTC 57 11404202 11404220 GTAACTCCTTCCTTCAGGC 58 Novel Rattus norvegicus 81 AABR07066735.1 ENSRNOG00000051921 ENSRNOT00000080300 3 1 1 82 9 13523099 13533210 AGGAGCAGTTATCTTTAGGGT 58 13533254 13533272 ACTGGACTGTCCTACAAGC 59 Novel Rattus norvegicus 81 AABR07024734.1 ENSRNOG00000055616 ENSRNOT00000085284 1 1 1 83 16 13013411 13014954 GCTGTTTGTGAGGTATGCA 59 13015000 13015019 GTTTCCAGGAAGCTACAGAG 58 Novel Rattus norvegicus 81 AABR07053577.1 ENSRNOG00000052651 ENSRNOT00000083380 2 1 1 60 3 114650700 114650719 CATCCTCATCCTCTTTGCCT 60 114651756 114651774 AAACACTGTCCTCCAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004761.1 ENSRNOG00000054312 ENSRNOT00000088739 3 1 1 133 1 154822725 154829901 AACGAGTTTGCAGCTTACG 59 154829997 154830016 CGTATGTGCAAAGTACAGCA 59 Novel Rattus norvegicus 81 AABR07066829.1 ENSRNOG00000054111 ENSRNOT00000080385 1 1 1 90 9 18206901 18206920 CTGCATTGTATTAGGGTCGG 59 18206973 18209219 TTCTTCGGCATCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07035778.2 ENSRNOG00000055080 ENSRNOT00000085667 2 1 1 81 12 22297384 22298017 GACCATGTCGGGTATTGCT 60 22298061 22298080 GGGACAGTAAGTACAGCAGG 60 Novel Rattus norvegicus 81 AABR07066832.1 ENSRNOG00000053221 ENSRNOT00000086049 3 1 1 81 9 18443302 18443323 AGACCATGAGACTAAATTCCCA 59 18443363 18445114 TGCTGAGTCTCCTTACATGAC 60 Novel Rattus norvegicus 81 AABR07024856.1 ENSRNOG00000054993 ENSRNOT00000089499 3 1 1 80 16 19400296 19409328 GCAAACAAGACCTCAAACTC 58 19400235 19400253 GAACGAGTCAGCCTAATGG 58 Novel Rattus norvegicus 81 AC109886.1 ENSRNOG00000055574 ENSRNOT00000077128 2 1 1 123 3 124615589 124615607 AAGGTGGACTGTTCAGTGG 60 124615694 124616584 ACCTGTCACCAGTGAAAGG 60 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 1 1 1 101 16 22562843 22562861 TCTTGCCAGCTTTCAAGGT 60 22562017 22562781 GATCTCCTTCTTCTCAACTTGC 59 Novel Rattus norvegicus 81 AABR07005031.2 ENSRNOG00000060840 ENSRNOT00000078119 2 1 1 100 1 176050352 176050370 GAACATGAACACAGGAGCA 58 176050434 176052780 AGTCTTCGATTCCTCTGGA 57 Novel Rattus norvegicus 81 AABR07053847.1 ENSRNOG00000055284 ENSRNOT00000086551 3 1 1 83 3 130435150 130455273 CATGGACAACAGATGGTGC 59 130455319 130455338 ACTGTCCTTGTAAGCGTCTC 60 Novel Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 1 1 1 74 3 130601387 130601408 CTAGGAATGTTTATCCATGGGA 58 130594905 130601352 TATTCTTTGACAACGGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035802.1 ENSRNOG00000052918 ENSRNOT00000078493 3 1 1 98 12 22796247 22796265 TTGAGGAAGCTTCTGGGAC 59 22792788 22796186 ATTCAAATGTGGTCCAGGGT 60 Novel Rattus norvegicus 81 AABR07053849.2 ENSRNOG00000057184 ENSRNOT00000084508 2 1 1 70 3 130642116 130642134 CCATATTCCAGTGGTCAGC 58 130640521 130642082 TCATGAGGTTTGTTGTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035888.1 ENSRNOG00000059259 ENSRNOT00000088837 1 1 1 81 12 26703990 26704010 TCTGGACCTGAATGATACCTG 59 26704052 26709574 GGGAAGGACCTCAAGATCTG 60 Novel Rattus norvegicus 81 AABR07036024.2 ENSRNOG00000060352 ENSRNOT00000091954 3 1 1 69 12 30948086 30948105 TCCATGTCAAGGACATTCTC 57 30947665 30947684 GAAGAGAAGCTTTGCTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036084.1 ENSRNOG00000060336 ENSRNOT00000081257 2 1 1 80 12 33922518 33924875 TGGTGAATGTCGAGGATGG 60 33922456 33922474 CAATCTGCAGGCAATCAGG 59 Novel Rattus norvegicus 81 AABR07036089.1 ENSRNOG00000055993 ENSRNOT00000086585 1 1 1 80 12 34225975 34231597 ATACCCAAGCTGTCTCCAG 59 34231638 34231659 TCCACTCAAACTGAAGTTTCTC 59 Novel Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000081777 2 1 2 80 16 60002272 60004352 TGATGATGCTCAGATCACC 57 60002210 60002228 ATCTTCTGGTCCACTTGGA 58 Novel Rattus norvegicus 81 AC123083.1 ENSRNOG00000060182 ENSRNOT00000078386 1 1 1 80 1 201857593 201857617 CATTTCCTCTTCTCTGTTCATAGAC 59 201857654 201858886 GTCGAAGATGCATCACTTGG 59 Novel Rattus norvegicus 81 AABR07054482.1 ENSRNOG00000061183 ENSRNOT00000091823 3 1 1 114 3 155857430 155858957 CTTACCTGCTCAGATCAAGAG 58 155857336 155857356 TGGATATCTTCCCAGTGAGTC 59 Novel Rattus norvegicus 81 AABR07005955.1 ENSRNOG00000053950 ENSRNOT00000081722 3 1 1 81 1 208694325 208694343 TTGCAACTGTGAAGACCCA 60 208684240 208694281 TATGATGAGGCCTAAGCCAG 59 Novel Rattus norvegicus 81 AABR07036435.1 ENSRNOG00000057583 ENSRNOT00000083739 3 1 1 81 12 43221991 43222009 GGCTCTTCACAGAGGATGG 60 43219162 43221947 CTTTCGGAGACACTCTTCCT 59 Novel Rattus norvegicus 81 AABR07005977.1 ENSRNOG00000052216 ENSRNOT00000084257 3 1 1 97 1 210517470 210517488 CAGCAAAGCCATGGAAAGG 60 210516044 210517411 ACTTGATTTCAGGCAACTTCC 59 Novel Rattus norvegicus 81 AABR07026241.1 ENSRNOG00000059687 ENSRNOT00000083516 2 1 1 65 16 69319835 69319853 CTGTCCCTACCTGGAACAG 59 69320833 69320851 GATGAAGAGCTGTGTCGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054609.1 ENSRNOG00000056512 ENSRNOT00000090601 2 1 1 81 3 163243216 163243236 AAGAAATGGGTCAGCATTCTG 59 163241706 163243173 TGCCATGAATGAGCATCCT 60 Novel Rattus norvegicus 81 AABR07006038.2 ENSRNOG00000061253 ENSRNOT00000088263 1 1 1 88 1 214974848 215004921 CTATCAAAGGAAACGCAAGGA 59 214974780 214974798 ACATGCTCTGGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07036679.1 ENSRNOG00000054596 ENSRNOT00000081300 1 1 1 87 X 259516 259534 ATGCTTGGATCCCTGACAG 60 259585 260122 TCTTGTCCACTTGAGCAGG 60 Novel Rattus norvegicus 81 AABR07054801.1 ENSRNOG00000061502 ENSRNOT00000085438 2 1 1 80 3 169641760 169641779 TGAAGATGACAGGTCTCCAG 59 169641822 169657002 TGTTCCAACACCTTGACGT 60 Novel Rattus norvegicus 81 AABR07006197.1 ENSRNOG00000053356 ENSRNOT00000077519 3 1 1 80 1 224139612 224160928 AGCAAATGGGAACAATGGTG 60 224139551 224139574 GTATCTCCTCTGAACTAAGATGCA 60 Novel Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 1 1 1 60 X 21946881 21946899 GTCATCTGCCAAATGGGTC 59 21946380 21946860 CTGAGAAATCCTGATGAAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037528.1 ENSRNOG00000061366 ENSRNOT00000082703 3 1 1 87 X 23218329 23218348 TGTGATCTGATCATGACAGC 58 23218398 23218989 CTTCCCAAACCTGGTTGAC 59 Novel Rattus norvegicus 81 AABR07054855.1 ENSRNOG00000058795 ENSRNOT00000086974 1 1 1 81 3 172371196 172373907 GGACTCAGACACTGTTCCT 59 172371133 172371151 GATTCGTGTTGCTCGATGG 59 Novel Rattus norvegicus 81 AABR07006311.1 ENSRNOG00000060420 ENSRNOT00000079478 3 1 1 80 1 228815493 228815513 GATCTTGTAGAAGAGCTGACC 58 228793686 228815451 ACAGTCTTCCTTACCTGCT 58 Novel Rattus norvegicus 81 AABR07026499.2 ENSRNOG00000060624 ENSRNOT00000086410 1 1 1 86 16 79207069 79207330 CTGAACACTAATGAAAGATGGG 57 79207004 79207023 AAAGACTATCCTGAAGGCAG 57 Novel Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 1 1 1 80 X 35154471 35154489 ATGGCAATATGCAGTGTGG 59 35151738 35154432 GGTAGTTGTCCTGAAGAAATTCTC 60 Novel Rattus norvegicus 81 AABR07054991.1 ENSRNOG00000060218 ENSRNOT00000086637 2 1 1 92 3 177457797 177457910 GGGATGTGAAGTTTATCTTTCTCC 60 177457728 177457746 TCCTGTGTAAGGAGCACTG 59 Novel Rattus norvegicus 81 AC111257.3 ENSRNOG00000056910 ENSRNOT00000092115 1 1 1 86 16 81082293 81087862 AAGAATAGGGAGTGTTCGC 57 81082225 81082243 CTTGTCCATAAGAACGGCT 58 Novel Rattus norvegicus 81 AABR07068203.2 ENSRNOG00000059293 ENSRNOT00000080391 3 1 1 102 9 90712091 90725540 AACAAACAGATTCTGAGGCA 58 90725605 90725623 AAAGCATTTCGGAACTGCA 59 Novel Rattus norvegicus 81 AABR07055333.1 ENSRNOG00000060440 ENSRNOT00000077500 2 1 1 97 7 1587158 1587176 AAGAATCCCGATTCTACGC 57 1587236 1591324 GTTCATTAATGGACCTGCCT 58 Novel Rattus norvegicus 81 AABR07068222.1 ENSRNOG00000055585 ENSRNOT00000080946 2 1 1 81 9 91414737 91414857 CTAAGATTACAGAAAGAAGAGGGC 59 91414679 91414698 AAACAAGAGCTTCACAACCA 58 Novel Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 2 1 1 70 16 82332004 82332023 CTTCATTGTGGACATGGCTG 60 82331610 82331971 GAAGACAAGCCTTGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006542.2 ENSRNOG00000058035 ENSRNOT00000086926 2 1 1 99 1 239313386 239318843 CTGAAATGTGAGGGCTGTC 59 239313305 239313324 GCTCTGATGACTCTTTGTCC 58 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 3 1 1 85 X 65111797 65111816 TTTAACTTTCTGCTGCCCTG 59 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026544.1 ENSRNOG00000053489 ENSRNOT00000078356 2 1 1 80 16 82576268 82576287 TCCTAGGTGACTCGAAATCC 59 82573103 82576226 TTCGACCCTTAGAAGGTGTC 59 Novel Rattus norvegicus 81 AABR07026544.1 ENSRNOG00000053489 ENSRNOT00000078356 3 1 1 80 16 82576273 82576291 AGTCTCCTAGGTGACTCGA 59 82573107 82576229 ACCCTTAGAAGGTGTCCAG 58 Novel Rattus norvegicus 81 AABR07039233.1 ENSRNOG00000060509 ENSRNOT00000079320 1 1 1 80 X 72707111 72707222 CCACAGCAGAACATGTCTC 59 72707261 72707284 CTGTTGCTTGGGATAGTAATACTC 59 Novel Rattus norvegicus 81 AABR07026612.1 ENSRNOG00000056384 ENSRNOT00000084414 3 1 1 82 16 86465679 86465697 TCGTGGTCACAGTATCACC 59 86470323 86470341 CCTCTCAGTGACAGGTTCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.1 ENSRNOG00000053506 ENSRNOT00000084842 2 1 1 80 1 244977994 244980809 TGGACCTCCTAGATAAGAGC 58 244980851 244980870 AGAACTATCGAGAGCTTCCT 58 Novel Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 3 1 1 73 X 77956553 77957195 GCCCTTCATCTCTGAATGTG 59 77956499 77956518 ATTACCAAGAGGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000082368 1 1 2 80 7 20856799 20867869 GAATGTGAGCCAATGTGGA 58 20856737 20856755 TCTCAGCGTACTCCTTGTC 59 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000083393 2 1 2 80 7 20856780 20856798 TGCTTCAGTCATGTTCAGG 58 20849920 20856740 GAGACCTGTTTCCTAATGATCTC 59 Novel Rattus norvegicus 81 AABR07056374.1 ENSRNOG00000061837 ENSRNOT00000083690 3 1 1 82 7 22986346 22986369 CAGAGATTCCTGTTAAATGTCCAC 60 22982413 22986308 ATCTCTAACTTCATCCAGCCTG 60 Novel Rattus norvegicus 81 AABR07068555.1 ENSRNOG00000055702 ENSRNOT00000091381 2 1 1 80 9 108353762 108405706 ACTATCAGCTCAATGTCTGTG 58 108353702 108353721 TCTGGATCCTTCTCTTGGTG 59 Novel Rattus norvegicus 81 AABR07026936.2 ENSRNOG00000053660 ENSRNOT00000084425 3 1 1 82 17 5811320 5812460 TCTTAGCAAGACCTATTGAAGC 58 5811259 5811279 TCCTCATAAGAGTTTCAGGGA 58 Novel Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 2 1 1 85 9 110399611 110401434 TGACATTGGAGTATTTCTAGGG 57 110399547 110399566 GAATTGAACTCTGGACCTCC 58 Novel Rattus norvegicus 81 AABR07026986.1 ENSRNOG00000057787 ENSRNOT00000085522 3 1 1 91 17 8524001 8524019 TGATTCTCCATCGCCTCAC 60 8523036 8523949 CCGCATATCTTCAGCTTTATGG 60 Novel Rattus norvegicus 81 AABR07042652.1 ENSRNOG00000061211 ENSRNOT00000081065 1 1 1 87 19 1445503 1445521 CCTCCTTCTTCACAAGGGA 59 1436615 1445458 CTTGGATCTCTTCTAGAAATGTTCC 59 Novel Rattus norvegicus 81 AABR07042654.3 ENSRNOG00000060758 ENSRNOT00000079060 1 1 1 80 19 1572649 1572668 CTGGGACAACTTAGCAAAGC 60 1572495 1572609 TTCAACAGCGTGATAACTTTGG 60 Novel Rattus norvegicus 81 AABR07042654.1 ENSRNOG00000057797 ENSRNOT00000085554 2 1 1 96 19 1714572 1714590 GGCTGGTATTCATCCAACC 58 1714647 1715265 CAATTCTGCTTATGGAAGTTGG 58 Novel Rattus norvegicus 81 AABR07027080.1 ENSRNOG00000060331 ENSRNOT00000081655 1 1 1 80 17 13413617 13413637 TTCCTTCATTGTGACCTTCCT 59 13413677 13426351 AGAGGCAGCCTATATTCATGG 60 Novel Rattus norvegicus 81 AABR07072058.1 ENSRNOG00000051500 ENSRNOT00000089252 1 1 1 87 1 262458904 262458922 TCCGGATTTACTCCAGAGC 59 262432275 262458854 TTCAGGAATCCATCCAGGAG 59 Novel Rattus norvegicus 81 AABR07042781.1 ENSRNOG00000055209 ENSRNOT00000079514 1 1 1 80 19 8354969 8354988 CAAGGGAAACTCCATGTGAG 59 8355031 8356715 AGTGTTTGCACCTTCTCTG 58 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089968 1 1 3 80 17 21002721 21005681 ATTGCAGTTTAGAGGACAGC 58 21005722 21005742 TGTGATGATCAAGAGATGGTG 58 Novel Rattus norvegicus 81 AABR07069205.1 ENSRNOG00000054346 ENSRNOT00000091933 3 1 1 82 8 11831661 11837943 TTGATCTCACCAGGGAAGG 59 11831597 11831615 CTCACGTGACTCAGTTCCA 59 Novel Rattus norvegicus 81 AABR07042989.1 ENSRNOG00000054003 ENSRNOT00000088811 3 1 1 109 19 15609288 15609306 GAGCTACAGAACAAAGGCA 58 15608590 15609215 GCTGACTTTCTATCCCTGC 58 Novel Rattus norvegicus 81 AABR07056802.1 ENSRNOG00000060920 ENSRNOT00000080263 1 1 1 81 7 41798840 41798858 GGTCGAAGCGTCATATCAG 58 41764201 41798796 GAGAAGTTACCTCCACAGAC 57 Novel Rattus norvegicus 81 AABR07069218.2 ENSRNOG00000053722 ENSRNOT00000085478 3 1 1 80 8 12818421 12821369 AGGTGATATGGTTAGAGGAATCTG 60 12818364 12818386 AGATAGCAGGAATCTAACAGCTC 60 Novel Rattus norvegicus 81 AABR07056858.1 ENSRNOG00000054216 ENSRNOT00000085795 3 1 1 91 7 44144931 44144950 TCAGACACCAAGACACAGAC 60 44142165 44144877 CTTGCCTTCCAATGTCCTG 59 Novel Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 2 1 1 85 7 50073543 50073562 CTTGGAAATGCCAGACTGTG 60 50072598 50073495 GACAGGGACATTCCCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057079.1 ENSRNOG00000053059 ENSRNOT00000085889 2 1 1 132 7 53759563 53759941 TTTCGATCTTGGGCTTTGC 59 53760036 53760055 TTAACAAGGGTTCCACAGCA 60 Novel Rattus norvegicus 81 AABR07069454.1 ENSRNOG00000059163 ENSRNOT00000079540 2 1 1 81 8 23178282 23179276 GGGCAGAATCTTAAGCAACC 59 23179319 23179338 GTCGTGGTCAAGAATTTGGT 59 Novel Rattus norvegicus 81 AABR07043098.1 ENSRNOG00000054562 ENSRNOT00000087496 3 1 1 104 19 20567813 20567831 TGCTGTATCTCCTTTGGTG 57 20559740 20559758 GAATGTGGAGATTCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057176.1 ENSRNOG00000061637 ENSRNOT00000083123 1 1 1 108 7 58882488 58882506 GAGGATTCTGGGACAGGTG 60 58873760 58882417 ATAATGTCCCTTCGGGTCAG 59 Novel Rattus norvegicus 81 AABR07069528.1 ENSRNOG00000057789 ENSRNOT00000084237 3 1 1 86 8 27376957 27408628 ACCACGTTCTTTCTTTGCAG 59 27376890 27376908 TCTCAAGCACTGACCTCTC 59 Novel Rattus norvegicus 81 AABR07057233.2 ENSRNOG00000057241 ENSRNOT00000089812 2 1 1 80 7 62202028 62202961 TAGATGAAGTCTCAACTTGTCC 58 62203002 62203020 GTGGATACTTCCTCAAGGC 58 Novel Rattus norvegicus 81 AABR07027407.1 ENSRNOG00000057161 ENSRNOT00000090633 1 1 1 80 17 28825191 28825211 TTTGACTAAACGTAGGATGGG 58 28825252 28829265 ACCAGGTAAGCTATTTGCAC 58 Novel Rattus norvegicus 81 AABR07043190.1 ENSRNOG00000055271 ENSRNOT00000084676 3 1 1 82 19 26352705 26353789 ACGAAACCTAAAGAGGCCT 59 26352641 26352659 CTCTCCTCTTCCTCGTTGG 59 Novel Rattus norvegicus 81 AC111781.1 ENSRNOG00000053126 ENSRNOT00000090710 1 1 1 60 8 36397064 36397085 CAACAGAAGTTACAGGAGTCAC 59 36397025 36397043 TGAGGACATGGAACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133739.1 ENSRNOG00000056082 ENSRNOT00000089585 1 1 1 80 8 39289069 39289089 TCGATTTCCTGGGATTAAAGG 58 39289129 39298572 GTTGAGAGGATCTGTAATCCG 58 Novel Rattus norvegicus 81 AABR07043510.1 ENSRNOG00000057214 ENSRNOT00000088827 3 1 1 69 19 28990489 28990507 TCCCTGATGACAAACATCC 57 28990315 28990333 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 2 1 1 60 17 37332686 37337128 GCAGAAGTTGGACTCAGAG 58 37337152 37337170 CCTCAGTGGAAGACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057421.2 ENSRNOG00000054306 ENSRNOT00000085702 1 1 1 60 7 70271942 70271960 AGAAGCCAAATTGGGTTCG 59 70270166 70270186 CAGTTCATCTCTGGCTATGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.3 ENSRNOG00000056347 ENSRNOT00000080549 2 1 1 60 8 40037648 40037667 TCTTCAGTCCTCAAGTTGTC 57 40037363 40037381 CAAGACAGGGTTGGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000088664 2 1 2 91 17 37911576 37911597 CTTAATTACAAGCAGAAACGCC 59 37911643 37912744 CTTGATATTTCTAACCTCTCAGCAG 60 Novel Rattus norvegicus 81 AABR07007078.1 ENSRNOG00000056390 ENSRNOT00000085111 1 1 1 89 1 279688281 279688299 GCATCAAAGCAGTAGAGCA 58 279694933 279694951 TATCACACTGGTCACTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069821.1 ENSRNOG00000061154 ENSRNOT00000081200 2 1 1 80 8 40902669 40903647 CAAGCAACATCTGGATAACAC 58 40902609 40902627 TTGCTGTTTCTCCTCTAGC 57 Novel Rattus norvegicus 81 AC098190.1 ENSRNOG00000057169 ENSRNOT00000087051 3 1 1 77 2 5881487 5881506 GGTTGAGCCAATGAGATCTG 59 5879348 5879366 ATTAGATGGCTGCTCTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043684.1 ENSRNOG00000054327 ENSRNOT00000079272 3 1 1 70 19 35909902 35909921 AGAAGAATGGATGGACAGGA 58 35904401 35904420 TAATCCTTGCCAGTCTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 3 2 2 82 10 109508 110531 GGTCAGAATTCAGGTTGGC 59 110577 110595 TCTGGGACACGGTAAACTC 59 Novel Rattus norvegicus 81 AC103227.1 ENSRNOG00000056707 ENSRNOT00000085541 3 1 1 85 2 11195419 11195438 ATAACCAAGCCAGAAGACTG 58 11194531 11195374 GTAAATAACCTCTGAAAGCAGC 58 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 80 19 38366013 38366032 AGTGAGACCAAGAAGACTGG 59 38365658 38365971 GGCTGTAACATTCAGAACGA 58 Novel Rattus norvegicus 81 AABR07029111.2 ENSRNOG00000056145 ENSRNOT00000077595 1 1 1 83 10 7871857 7871875 TGACATCGTGAAGGTTGTC 58 7871920 7880165 GAAGTCAAGAGTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07057798.1 ENSRNOG00000056050 ENSRNOT00000087238 3 1 1 83 7 88071300 88071320 GCACTAGAAGAGGAATACGAC 58 88033197 88071257 GAATCCTGTTAACCTTGTCCT 58 Novel Rattus norvegicus 81 AC130139.2 ENSRNOG00000058236 ENSRNOT00000083807 1 1 1 69 10 13356860 13356878 CTACACAAACATCCTGGCC 59 13358060 13358078 GACCAGAGTTAGATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 1 1 1 60 10 15170444 15175418 GGGACTCACATCATTCCCA 59 15175440 15175460 GTCTTCAGATGAGACCAACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029218.1 ENSRNOG00000054167 ENSRNOT00000082397 2 1 1 86 10 15837097 15837115 TTCCAGGAGCAGTTCAAGG 60 15837162 15838246 GTGAAAGAATCCTTCCAAAGCA 60 Novel Rattus norvegicus 81 AABR07041096.1 ENSRNOG00000054795 ENSRNOT00000082683 2 1 1 83 X 119200636 119200654 GTTATGGCTGCTTTGAGCT 59 119198968 119200592 GGAAATTTCTTTGTCCTTCTCC 58 Novel Rattus norvegicus 81 AABR07041096.1 ENSRNOG00000054795 ENSRNOT00000082683 3 1 1 84 X 119198968 119200592 GGAGAAGGACAAAGAAATTTCC 58 119198905 119198923 TTTGGTTAGCAGCTCTCCT 59 Novel Rattus norvegicus 81 AC111369.1 ENSRNOG00000053789 ENSRNOT00000086750 3 1 1 80 10 16948884 16949128 CTTCTCGAGAATCACCATCC 58 16948823 16948841 ATTCGGTGACACAGATGTC 58 Novel Rattus norvegicus 81 AABR07029452.1 ENSRNOG00000058208 ENSRNOT00000088987 2 1 1 80 10 29189640 29189658 TGGACAGACTCAGTTTCCC 59 29190399 29190417 ATTTCAGCTTGTCTGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058240.1 ENSRNOG00000053987 ENSRNOT00000087433 1 1 1 60 7 106055589 106055608 CTCCAAACAGATGTTGACCC 59 106054607 106054626 GGATCTCTTCCAAGTCTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 2 1 1 76 8 56024615 56024634 GGCTCTCCATATTTGGAAGC 59 56024043 56024576 TTTGTCCTTCGGAGTGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007789.1 ENSRNOG00000053598 ENSRNOT00000083326 1 1 1 68 2 28264026 28264044 TTTCTGCAGGAGTGAGGAG 59 28282275 28282293 TTCCGGTCAAGTCTCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000086415 3 1 2 82 2 28841478 28841499 GAGGAATGACAGTGAACAACTC 59 28836930 28841438 TTGCAATGAAGTCCTTCAAGAC 60 Novel Rattus norvegicus 81 AABR07072559.2 ENSRNOG00000056375 ENSRNOT00000087248 2 1 1 80 17 44800477 44801446 CCAATGACTCAATCCCAGG 58 44801487 44801508 GAGTTCCAACTACTTGTCTGTC 59 Novel Rattus norvegicus 81 AABR07058656.1 ENSRNOG00000053803 ENSRNOT00000080276 3 1 1 91 7 129842308 129842326 CTTCTTGTTCTGCAGCTCC 59 129855856 129855875 TCACTGATACTAGCCCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070505.3 ENSRNOG00000058432 ENSRNOT00000090432 2 1 1 80 8 72734663 72734682 ATCACAAACCAGACAGACCT 59 72734722 72736386 AGTTAATTCACTTCTGTGCTGG 59 Novel Rattus norvegicus 81 AABR07070518.1 ENSRNOG00000054131 ENSRNOT00000079964 1 1 1 86 8 73534038 73534056 GAGTTCTGTTGAGCCACAC 59 73533175 73533991 GACAATTCGGATCAGAGATCTC 59 Novel Rattus norvegicus 81 AABR07059009.2 ENSRNOG00000058122 ENSRNOT00000082708 2 1 1 80 4 1093179 1093198 CAGAGCTTTGAAAGTGAGCA 59 1093241 1109977 ACTAGAGGGAAGACCTGGG 60 Novel Rattus norvegicus 81 AC132760.1 ENSRNOG00000059372 ENSRNOT00000090074 2 1 1 90 20 7655028 7655047 TATAAGACCCACCACGAACC 59 7655096 7655789 TTCCGATGACTAGAATCAGTAGG 59 Novel Rattus norvegicus 81 AABR07044562.1 ENSRNOG00000052789 ENSRNOT00000082975 2 1 1 81 20 10613772 10613795 GGTTTGTAGAAAGAGAAGAACTCG 60 10613833 10614491 TCGTTGATCTTAAACGCTCTG 59 Novel Rattus norvegicus 81 AABR07028465.1 ENSRNOG00000055963 ENSRNOT00000087930 2 1 1 80 17 71158642 71158661 AATTGCAAGCGATTCAAAGC 59 71152107 71158602 CTTCTCTGCATATTTCCCAAGG 59 Novel Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 1 1 1 60 20 18248202 18258575 GGAGATTTCTCAACCGGGT 59 18248160 18248181 GCTTCGTTTACGAACTAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC125620.1 ENSRNOG00000054749 ENSRNOT00000077893 3 1 1 81 4 28615215 28615234 CCTCAATCTGGTTGCTTCTC 59 28603280 28615174 TATGACGAAACTCAGTAACCCT 59 Novel Rattus norvegicus 81 AABR07028469.1 ENSRNOG00000051695 ENSRNOT00000090314 1 1 1 82 17 71459699 71459717 GGACCGGATGATACTTGGG 60 71457048 71459653 GATGTTTCACCTTGCAGGC 60 Novel Rattus norvegicus 81 AABR07044754.1 ENSRNOG00000052144 ENSRNOT00000077693 2 1 1 81 20 19605285 19605303 CTCAGCTTTCACAAGAGGG 58 19605345 19610260 TATTCTGACCTAAAGTTGTCCG 58 Novel Rattus norvegicus 81 AABR07028534.1 ENSRNOG00000059907 ENSRNOT00000081693 1 1 1 80 17 74003716 74004574 TTCAAGTTAGTAACCTCGGGA 59 74004614 74004634 CCGTATACTCACCTCATAGGA 58 Novel Rattus norvegicus 81 AABR07044804.1 ENSRNOG00000054048 ENSRNOT00000087778 2 1 1 82 20 21190409 21191022 AAGTGTGCAATTCAGGCTC 59 21190345 21190363 TTGGACAACCGGTGTATCC 60 Novel Rattus norvegicus 81 AABR07044837.2 ENSRNOG00000060235 ENSRNOT00000088740 2 1 1 85 20 23073705 23073723 TGAACAAGAGTGGGACCAG 59 23083563 23083585 TGTTATAGACAGATGAGACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071199.1 ENSRNOG00000056201 ENSRNOT00000082349 2 1 1 81 8 104376260 104377774 CAGTGCCATTTGTGAGCTG 60 104376197 104376217 TTCTGCTATTGGTCTGAGGAG 59 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 3 1 1 80 17 86744823 86744842 AGTTGCAAAGAATGCATCTG 57 86741673 86744780 TCCCAGGAGATAGCTTCTC 58 Novel Rattus norvegicus 81 AABR07044962.1 ENSRNOG00000056428 ENSRNOT00000089619 2 1 1 80 20 28371435 28372191 GGTTCAGAAATTGCCTGTCC 60 28372231 28372252 TCACTGTAGTCTTCAAGTTCCT 59 Novel Rattus norvegicus 81 AABR07071294.1 ENSRNOG00000057020 ENSRNOT00000080250 3 1 1 80 8 108080876 108084663 CAAAGCATGCACAGAAATGC 59 108080815 108080835 TCAGTAGCTACTTCCTTCCCT 60 Novel Rattus norvegicus 81 AABR07044980.1 ENSRNOG00000061835 ENSRNOT00000091080 1 1 1 81 20 30108187 30111690 CAATGCCACGGATCAAGAC 59 30108124 30108142 CATGTCTTGTACGTCCGTG 59 Novel Rattus norvegicus 81 AABR07045262.1 ENSRNOG00000059536 ENSRNOT00000086768 2 1 1 80 20 39771901 39778792 TCTACATTCTCTGAGAATGACTGG 60 39771844 39771865 GTATGTTCAAGGAAGGACTGTG 59 Novel Rattus norvegicus 81 AABR07060261.1 ENSRNOG00000059379 ENSRNOT00000086493 2 1 1 87 4 65074129 65074147 GGAGGAAATGCTGCAACAG 60 65073057 65074081 GTGTTGTGAGACCTTTATCTGG 59 Novel Rattus norvegicus 81 AABR07071512.1 ENSRNOG00000055306 ENSRNOT00000080248 2 1 1 80 8 119317432 119319362 TTCTTGACAAAGTTCACAGAGC 60 119319401 119319421 AAAGTCTGGTTCACAACAGAG 59 Novel Rattus norvegicus 81 AABR07060519.1 ENSRNOG00000059013 ENSRNOT00000086066 1 1 1 113 4 77415653 77446385 TGAGAAGGCAGACAATGAGG 60 77415559 77415577 TTCTTCCTCCATCCACAGC 59 Novel Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 2 1 1 60 2 68819536 68819556 GACTCGAATTTGGAACCTACC 59 68819578 68820154 TCTTCTCCCTGGTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071589.1 ENSRNOG00000057234 ENSRNOT00000084169 2 1 1 95 8 123391448 123393398 CACGGATACATAAGATCATGCA 59 123393454 123393472 CATGTCACCAGTCCTTGTC 58 Novel Rattus norvegicus 81 AABR07043877.2 ENSRNOG00000054148 ENSRNOT00000083375 1 1 1 84 19 45537565 45537584 AAGTCTTTCCAGTTCTGGCT 59 45537631 45563406 TTCCCATTTGATTTGCCGC 60 Novel Rattus norvegicus 81 AABR07071619.1 ENSRNOG00000058565 ENSRNOT00000081690 2 1 1 81 8 124414751 124414769 CTTCCTGCAGCTAAGTTCC 58 124414814 124415729 CGAAGAGATGCAAACTGCT 59 Novel Rattus norvegicus 81 AABR07043940.1 ENSRNOG00000052678 ENSRNOT00000085197 3 1 1 80 19 48958329 48958350 GGGAGAAATTCCTAAGAAGAGG 58 48958390 48960136 CTAACATCCCAGTCAGTGTC 58 Novel Rattus norvegicus 81 AABR07071662.1 ENSRNOG00000059072 ENSRNOT00000081801 3 1 1 154 8 126542738 126567989 TTTGTTCGCCTAGAACACC 58 126568107 126568125 AAGCAAGAACTGGATGGAG 57 Novel Rattus norvegicus 81 AABR07044036.1 ENSRNOG00000059054 ENSRNOT00000080991 2 1 1 61 19 53395381 53396305 CCATCATTTGAAGAAGATCTGC 58 53395341 53395362 TAGGTGATTACTCTTCCTCACG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07008970.1 ENSRNOG00000058721 ENSRNOT00000077499 1 1 1 117 2 81722588 81722608 TGTCCTCATTTGTTCTTCCTG 58 81729495 81729513 AAGGGTCCACGTAAGATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058773.1 ENSRNOG00000055355 ENSRNOT00000082261 3 1 1 93 7 136953005 136953024 TTCTCAGACAGGAAGCAGTG 60 136953076 136955293 CTGAAATTACCAGTGTTCTGACC 60 Novel Rattus norvegicus 81 AABR07071765.2 ENSRNOG00000051645 ENSRNOT00000080648 2 1 1 101 8 130243160 130243178 AATATGCAGGTGTCCAGCT 59 130246377 130246395 GCCTGAATCCAAAGTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.2 ENSRNOG00000056137 ENSRNOT00000078882 3 1 1 81 7 137535121 137535645 GATGTGTCATTCACTTGAACGA 59 137535687 137535705 TCCTGGACTAAGGTTGCAG 59 Novel Rattus norvegicus 81 AABR07009031.1 ENSRNOG00000061466 ENSRNOT00000081329 2 1 1 82 2 84239630 84239648 GTGGCTACCAACAAGTGAC 59 84230196 84239586 AGAGTTATCACAACACTCCCA 59 Novel Rattus norvegicus 81 AABR07071817.1 ENSRNOG00000051893 ENSRNOT00000089025 2 1 1 61 8 132405848 132405866 ATGGATGAAGCCCTGAGTC 59 132402863 132402882 TGCGTTAGTCTAGAATGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058838.1 ENSRNOG00000056773 ENSRNOT00000081717 1 1 1 102 7 138983467 138988986 CCTCTGTCTGATCTTGAATAAGAG 59 138983388 138983409 TCTCTGAAGCACAAATCTTCTC 59 Novel Rattus norvegicus 81 AABR07009247.1 ENSRNOG00000051687 ENSRNOT00000080050 1 1 1 80 2 90246029 90251029 GTCCTACAGAGAAATATGAAGGC 59 90245971 90245992 ATTTCTTTGCAGGTCGTAATGG 60 Novel Rattus norvegicus 81 AABR07009638.2 ENSRNOG00000051963 ENSRNOT00000084802 1 1 1 95 2 106739331 106739351 CACATTTATGGCAGAAGAGGT 58 106741767 106741788 GCATTGTGTCAGTTTAATTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009639.1 ENSRNOG00000053422 ENSRNOT00000088480 1 1 1 80 2 106849289 106849310 ATTGACTGGAATCCATCATGAC 59 106849345 106850662 CCTTTATGTAGGGTTCATTGTAGTC 59 Novel Rattus norvegicus 81 AABR07009824.1 ENSRNOG00000056392 ENSRNOT00000083360 2 1 1 87 2 113907592 113907612 GAGAACCAGAATTACTCCAGG 58 113907660 113956749 AAACAAGACTCTGTGTAGCC 58 Novel Rattus norvegicus 81 AABR07010031.1 ENSRNOG00000055532 ENSRNOT00000089323 2 1 1 80 2 121240871 121240889 AGAAGATGGTCCAGGACCT 60 121240930 121243494 GAAGGAATCCTTTGTCTTCAGC 60 Novel Rattus norvegicus 81 AABR07010385.1 ENSRNOG00000052107 ENSRNOT00000085550 2 1 1 80 2 133881672 133881695 CCTCACTAAAGCAGACTTTAAGAC 60 133881733 133881880 CTAGTTTCTCTGTAGCCGCT 59 Novel Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 1 1 1 115 2 142079488 142084821 GTTCTTAGGAATTCCTGGTGG 58 142079393 142079412 CTTAACCTCTGAGCTGTCTC 58 Novel Rattus norvegicus 81 AABR07011084.2 ENSRNOG00000060521 ENSRNOT00000078172 2 1 1 131 2 157392332 157392350 GATCTGAGCCAGTGATCGT 59 157392445 157402613 GTCTCCAGCTTCTCCTCTG 59 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 2 1 1 64 2 162021747 162022789 TTTCCTTCTTACAGCAGCA 57 162022816 162022835 AATCAGGCTTCATACTTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011746.1 ENSRNOG00000053955 ENSRNOT00000080573 2 1 1 80 2 167987438 167996086 AGAAAGAAACCCAAAGGAACAG 59 167996126 167996145 TCTGTCTGTGATGTTCTGCA 59 Novel Rattus norvegicus 81 AABR07011908.1 ENSRNOG00000057062 ENSRNOT00000083621 1 1 1 80 2 175661879 175661898 ACTGTGTCCAGATAGCAGAG 59 175661260 175661836 AGTTCCAGACTGCTTCCAG 59 Novel Rattus norvegicus 81 AABR07014317.1 ENSRNOG00000053286 ENSRNOT00000080564 1 1 1 125 14 9101543 9101561 TTAAGCACTCGCTTCTGTC 58 9100314 9101455 TAATCTGTCGTTCTTGGCAG 58 Novel Rattus norvegicus 81 AABR07012774.2 ENSRNOG00000055255 ENSRNOT00000079542 1 1 1 80 2 207870618 207870636 AAGAACAGCAACAGCAGTG 59 207870679 207871614 CTGGGATGACATATCAGGGA 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 1 1 1 76 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143212 225143953 TTAGGTGAGGAAAGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013365.1 ENSRNOG00000058246 ENSRNOT00000085046 1 1 1 111 2 234491504 234493137 TATGACTGCAGGTTTGACG 58 234491411 234491430 TTTATCCATGCCTGGAAGTC 58 Novel Rattus norvegicus 81 AABR07013410.1 ENSRNOG00000052248 ENSRNOT00000080258 1 1 1 73 2 236007074 236007092 AAAGCTGACTTGCCAACAC 59 236011043 236011061 TGTCAGCTACCAACCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013477.2 ENSRNOG00000059314 ENSRNOT00000091629 1 1 1 80 2 239063759 239063777 AAAGATCTGGACGTGTCTG 57 239063821 239066595 CTGGCGTTATAGTAGGCTG 58 Novel Rattus norvegicus 81 AABR07013653.1 ENSRNOG00000059088 ENSRNOT00000090535 2 1 1 80 2 248544276 248545254 CTCTTATCCTTCAGGAGCG 57 248545296 248545316 TCTGAATCTCTTTCTCATGCC 58 Novel Rattus norvegicus 81 AABR07013701.1 ENSRNOG00000057834 ENSRNOT00000090803 1 1 1 80 2 251535215 251535233 CCTCTGCTGAGAGCTACAG 59 251535274 251606329 GTAGTGGAATTGTCTTCTCCAC 59 Novel Rattus norvegicus 81 AABR07013931.3 ENSRNOG00000061742 ENSRNOT00000080020 2 1 1 80 2 264213045 264215682 TCTGTCTTGCCTGAAAGGA 59 264215726 264215744 TTAGAGCTGGGTGTTAGGG 58 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 1 1 2 104 7 115830351 115830370 CACTACGGACTCTCCTTCAG 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 2 1 1 61 13 51939271 51939291 CCTTACCAAGTCTCAACTTGC 59 51939315 51939333 GGTGGCATATGTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059150 ENSRNOT00000077208 3 1 1 60 17 82845428 82845448 CGATACAGAGAAGATTAGCGT 58 82845470 82845488 AAAGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063544.1 ENSRNOG00000005811 ENSRNOT00000007637 3 1 1 86 6 34554738 34554757 GGCTTAGATAAGAAGGTCGG 58 34554669 34554689 CTCGATAGTGAGGATTGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 2 1 1 60 X 46934424 46934443 ATGTGATGACTCATCAGAGC 58 46934382 46934401 AGCAGGATACACAGTACTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 3 1 1 74 3 76976093 76976112 ATGGGACTAACACAGAATCC 57 76976145 76976168 GACAGTAATGATGTAGGTGATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052112 ENSRNOT00000085973 1 1 1 84 17 37178288 37178307 ATACCATGACCACAAAGGTG 58 37178354 37178372 CGAGTTTCCTGCATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055267 ENSRNOT00000088460 2 1 1 60 4 62765763 62765781 GAGGGAACTGCATTCTGTG 59 62765802 62765823 ACAGGTAATTCCTACATCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0863.2 ENSRNOG00000051077 ENSRNOT00000082286 3 1 1 80 6 76685802 76700294 CGACAGCATTGTGAGAGTG 59 76700334 76700356 CTCAAGCCTTCTTATCTTCTCCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058274 ENSRNOT00000083845 1 1 1 60 4 121506861 121506879 CTGCACTCAGTTGAAGAGG 58 121506902 121506921 AGATACCTTGACCAAAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053838 ENSRNOT00000081101 1 1 1 60 1 116710519 116710540 ACAACAGAAAGTCAAGAACAGG 59 116710480 116710500 TGAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008513.1 ENSRNOG00000056876 ENSRNOT00000078624 1 1 1 60 2 62904430 62904449 AAATACAGATTCTTGGGCCC 58 62904470 62904490 CCCACCCAGATTTACTTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 2 2 2 80 5 77432994 77433015 AGTGCAGGGAACTATATTTGGT 60 77246988 77432956 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056 1 1 2 85 5 77433381 77433707 TGTGGACAAACTCAATGGG 58 77433314 77433332 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 2 1 1 76 1 165284442 165284463 TCCCACTGATATTTCTAAAGCC 58 165284501 165284519 GGTAGAGCAGGAAAGGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 2 1 1 138 19 44601340 44601359 ACCAAAGCAAATGCTAATCC 57 44600138 44600159 CTTGTTTACTTGTGTTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 SCARNA6 ENSRNOG00000054636 ENSRNOT00000084592 2 1 1 60 14 65281442 65281462 CTGAGAGTGAACAGTTCACAG 59 65281483 65281502 CAAGACTGCTGCATTATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059528 ENSRNOT00000078613 2 1 1 60 3 165570769 165570789 ACGATACAGAGATTAGCATGG 58 165570729 165570748 GAACACTTCAGGATTTCGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053938 ENSRNOT00000091915 3 1 1 60 1 56864840 56864861 CTACAGAAAGTCAAGAACAGGA 58 56864801 56864821 CTCAGCGTAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 1 2 2 80 4 29561556 29561575 GAAGGCTCTAGAAAGAACCC 58 29561617 29562205 CCAGTAGTAATCGCTCTTCC 58 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000089439 1 1 4 89 1 49618238 49681762 CAGAGGTCCAGCTAAACCC 60 49618167 49618185 TGAACTCGGAGTTTCCCAG 59 Novel Rattus norvegicus 81 AABR07006111.1 ENSRNOG00000020409 ENSRNOT00000027660 3 1 1 80 1 220610839 220610857 TCACCTTCTCATCCAGTGG 59 220610900 220610923 CCTTAGAGACCATGCAAGTG 58 Novel Rattus norvegicus 81 AABR07042565.1 ENSRNOG00000052151 ENSRNOT00000077592 1 1 1 80 19 31502 31520 GTTCTGGACCGAGACTCTG 60 30813 31003 GTGTCTAGAACAGAATCACAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059719 ENSRNOT00000083762 2 1 1 60 10 97019575 97019595 TTATTGATCCGTTTGCCTCCT 60 97019616 97019635 CCTATCAAGAAGGCATGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058788 ENSRNOT00000086895 3 1 1 63 14 86964960 86964978 AATGAGGTTTATCCGAGGC 57 86964915 86964934 ATACTGACTGGATTCTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057636 ENSRNOT00000089047 1 1 1 60 2 94735136 94735155 AATGGCAGTATCACAGTCAG 58 94735095 94735116 GCCTTCCAATTAGCAATAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055132 ENSRNOT00000084843 1 1 1 60 6 83452074 83452095 TTTCCTTCAATGTCCATGTGAG 59 83452116 83452134 AGAAGGCCTCTTCTACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059778.1 ENSRNOG00000061072 ENSRNOT00000086248 3 1 1 90 4 34962367 34962386 GTAAACAGGTGAAAGCCAGG 59 34962438 34962461 TGCATTCGGTCTTCTAGAGG 59 Novel Rattus norvegicus 81 AABR07002973.1 ENSRNOG00000050148 ENSRNOT00000074615 2 1 1 80 1 90949328 90949349 ACCTTTCTCTGTCTGTCACC 59 90949267 90949287 AGTGATGCCCTAAAGAATCCT 59 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000091377 1 1 2 80 1 254560174 254560197 CTTGTTCTCCATGAGTATCTTCAG 59 254569901 254569996 ATGAGAGCTCCACAGATACAC 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 2 2 4 100 9 88282556 88282574 GTAATGTAACCTACCCGGG 57 88280155 88280173 ACATCTCATACCAGGAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304 2 1 2 119 2 208383459 208383477 TGACAACAGAGAAGACCGG 59 208385092 208392611 GATCAGAATGGACATTCGGG 59 Novel Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 1 1 1 87 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346446 95346464 TAGCAACACTGGTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 2 1 1 88 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346447 95346465 GTAGCAACACTGGTAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 3 1 1 197 13 110678178 110678196 AATGTGTTCTTCTGCGTGG 59 110673859 110673877 CATGACTGCAGAACTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 3 1 1 64 3 79151578 79151596 TTATTCAAGCTTGCCTGCA 58 79151530 79151548 ATTAGACCACTGTTGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053320 ENSRNOT00000082311 3 1 1 60 13 536880 536902 GATACAGAGAAGATTAGCATGGC 59 536921 536940 GAACGCTTCACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061627 ENSRNOT00000077801 3 1 1 60 18 18835613 18835632 GGTTACTGTGTCACATGTGG 59 18835650 18835673 GAACATATACATGGCCTATCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067401.1 ENSRNOG00000052359 ENSRNOT00000078676 2 1 1 119 9 43086369 43086387 AACTTGTTGCTGCACAGAG 59 43086470 43086488 GCCTAATAGGCTCCCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076871 2 1 2 80 X 74337639 74337657 ATCCAGTTCAGGATCCAGG 59 74334962 74337596 TCCAGATTCACCCTGTACTC 59 Novel Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 2 1 1 62 4 89960564 89960582 CTGCTGAGGATCCCTTACC 59 90089656 90089675 TGGATTTACCTGCTAGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091 2 1 2 148 1 31264854 31264872 GGAGAAGATCACGCATACC 58 31265857 31267619 CGACAAATACTCTTTCTGACGA 59 Novel InUTR Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 2 1 1 60 7 380943 380961 AGTTCAGCAACCTCTACGT 59 381677 381695 TGGAGATGATGCCATTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 2 1 1 64 1 214009830 214009848 AAGGAACTCAGGACACTGC 60 214009782 214009800 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 2 1 1 60 14 32773478 32773497 TTGATACTCAACTGCCTGAG 57 32770339 32770360 AGGTGCTTTCCAGTATTATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 2 1 1 60 5 7577079 7577099 TGATCTCATCTTGGAAAGCAG 58 7577473 7577492 CTGTTCCTCAGAACATTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 2 1 1 61 14 58282725 58282743 TTCATTTCAGCGACATGGA 58 58289730 58289748 TAAATTCAGTGGCCATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 3 1 1 73 10 66654459 66654477 GGAGTTGAGTCTAGCAGCC 60 66652844 66652862 TCTCTTCGGTCTCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 3 1 1 63 1 24073421 24073439 CACCTAGGCAGACTCAGAG 59 24072674 24072692 GTCCTCCAGATGTCAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 2 1 1 96 14 104764454 104764472 CCTGTACTGGCAGGATCTC 59 104768582 104768600 GGAGATGCTTGCAGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 1 1 1 60 5 123667092 123667111 TGCAGACGAGTTATTATGCC 58 123663580 123663598 TGTTCTCCACCATCAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000089677 1 1 2 101 5 142405843 142405861 CAATGACACATACCGGGAC 58 142405338 142405779 GGCATGAACTTGTCATTGAC 58 Novel Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 3 2 2 81 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199563 CTTCCCTGAGAAGTGAATTGC 59 Novel Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 3 2 2 95 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081100 167081119 TCAAGTTGTTTGTCTGGACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088122 3 1 2 86 15 87456926 87470768 AGATGGAAGAGATGCAAGC 58 87456858 87456876 CAGTCAAACCTCACAGAGC 59 Novel Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 3 1 1 66 6 67771838 67771856 ATTGGACCTCTGTGCTACC 59 67775161 67775182 CTTAAATTTCCATCCTGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 1 1 1 70 15 105845853 105845877 GAATAGGGCTTACATAGACATAGAC 59 105849424 105849442 CATGGACGTTTGGTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 2 1 1 77 13 41853473 41853495 TCAGAGTGGAGACTAATGTTCAG 60 41860734 41860753 TACTCCAAGTGAAGGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 3 1 1 61 11 83377005 83377023 CTCATGGAAGTTGGTCGGT 60 83375959 83375977 GTGTGGATGAGCAGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 1 1 1 74 6 142405367 142405385 TGTTGGTCCTGAAGTTGGT 59 142405206 142405224 CAGACTCAACAAGCTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 1 1 1 62 12 9332088 9332106 CCTCTTCGAGTCTCCTCCT 60 9332604 9332624 CACTTCGGTTCTTCAATTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 2 1 1 115 12 13450394 13450412 CTGTTTCTGCTGCTTCCTG 59 13450823 13450841 CTCCACATGCCTCTGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 1 1 1 65 16 17139384 17139402 TTGGAGACAGTTCTGGGTG 59 17138136 17138154 TTACAGTGTGCTACACGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 2 1 1 60 3 120257559 120257579 GCATCTCATCATTGCTAGACG 59 120259534 120259557 GAATAACTCAGCTCTAGGAATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 3 1 1 64 16 18598121 18598139 ACACAGTCATCTGCAGAGG 59 18601927 18601945 ATGCCATCAAACTTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 3 1 1 84 12 36812689 36812708 TTTACTGGGCTGATGGATGG 60 36813653 36813672 GGTACAGGATAGAACGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 2 1 1 61 16 58777739 58777759 CAGCCAGGATAGAAGAGTCTG 60 58774438 58774456 TCTTGCCATTCCCATTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 1 1 1 60 12 42902412 42902431 ACACGATGCTAACTAAGCAC 58 42899744 42899762 GACTCTTCCTCTGGGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 2 1 2 80 X 35983909 35984119 AGAAGACCATATCTACGCCT 58 35983848 35983866 CAATGCTGATGTCCTGTCC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 1 1 1 111 7 28372076 28372094 TTAAGCTAACGGAAGTGGG 57 28372330 28372350 CAAGATCTGGAGGTATTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 2 1 1 60 19 3742504 3742522 TTGGCAATTTCGTTTGGTC 57 3734252 3734272 TACAAAGGTCTTCTGAAGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 2 1 1 65 X 108894043 108894061 GAGTGGCTGAATTTGCAGG 60 108894915 108894933 TCTCCAGAGATGAATGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 2 1 1 114 20 5318625 5318644 TCTTGTGTTTCAGGGAGTCC 60 5317911 5317929 CACCTGAGTTCCAGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 2 2 2 81 17 62682428 62682446 ATTTAGCTCCCAGTCACGA 58 62673388 62682383 AAAGTCACGTTTCGAGCTC 59 Novel Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 3 1 1 66 4 16953184 16953202 ATTCAGCCTAAGTCCTGCG 60 16951450 16951471 CATAAACTTCCCTCCATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 3 1 1 62 20 18258561 18258581 CTCCAAGGAGATTTCTCAACC 58 18248164 18248185 CGTTTACGAACTAAATGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 2 1 1 70 17 72120205 72120225 CTGCAGTAAATACGCAAACAC 59 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 2 1 1 61 20 23359529 23359547 TTCAACCAACACCTGTCCA 59 23351284 23351302 TCTGGTCTTTGCTACACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 1 1 1 60 20 38137073 38137094 TTCTGACATCCATTCTATCCAG 58 38140137 38140155 TCAGAGGGCAGTATGAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 3 1 1 117 4 63698700 63698718 TTTAACACTGAGCCACACC 58 63631492 63631510 GTAGAAGGGAGGTAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000078712 1 1 2 80 4 68437730 68440073 AATTCAAACCTGAAGGTTGC 57 68440115 68440134 GTAGATGTCCCACTCAACTG 58 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 1 1 1 91 2 65011788 65011806 AATCAGCACTCACTGACGT 59 65010645 65010665 GTTCTCCATAGAAAGTGTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 3 1 2 60 7 134985957 134985975 CGAACAAAGACCATCCGAG 59 134988452 134988471 GCCACGATTCTATCACAACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 3 1 1 60 8 130967903 130967922 CACTTTCTGCACTTGAACTG 58 130967654 130967673 CTAAAGTACCTGACAGCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 2 1 1 83 7 137542324 137542344 AGGAGATGGTAATCCACACTG 59 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 1 1 1 60 19 61789227 61789245 TGGCTCCAGTAAACAAGAG 57 61784876 61784896 ACCTTTCTTGGCTACATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 2 1 1 67 2 150686754 150686774 CAACCTCCATGGTCTAATCTG 58 150689275 150689293 GGAACGTCCCTATCATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 1 2 2 60 2 156405563 156405581 TAGGAGGACAGGAACAACC 58 156399635 156399653 GGTGATGTGGTCCCATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 3 1 1 135 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538781 233538799 TAACCGGACGTAAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 Dmbx1 ENSRNOG00000010835 ENSRNOT00000057055 2 1 1 84 5 134772748 134772766 TCATTACCCAGACGTGGTG 59 134772472 134772700 GTTCTTGAACCACACCTGC 59 NA Rattus norvegicus 81 Elovl7 ENSRNOG00000010450 ENSRNOT00000014074 3 1 1 80 2 40377562 40382726 CAAATTTGCTGCAGGTGGT 60 40377500 40377523 CCATAGTAGAAATACATGACCACG 59 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152,ENSRNOT00000038543 3 2 2 80 2 178277264 178277384 AGATACACTACATACGATCTCCTC 59 178277207 178277225 TACTTCCACAGAAGCTGCC 60 NA Rattus norvegicus 81 Kif2a ENSRNOG00000014000 ENSRNOT00000019189 2 1 1 80 2 38169532 38171726 GATAATAGAGTGGTTGGTTCAGC 59 38169474 38169492 GCTACCATTCTGTTGTGCA 59 NA Rattus norvegicus 81 Anxa9 ENSRNOG00000021134 ENSRNOT00000028693 1 1 1 80 2 196477305 196477323 ATGTACTGACCAATCGCAG 58 196477036 196477263 TCAATAGATCCTGTTTGGTGC 58 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000046858 ENSRNOT00000075521 1 1 1 60 X 106488425 106488443 CCTCTTGTGACTGGATCTG 57 106488464 106488485 TGGCTATTTCATAGGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24b ENSRNOG00000023373 ENSRNOT00000038509 3 1 1 80 2 230295917 230298148 ACATCAAGCAAAGGTGAGC 59 230295855 230295874 TGCATAAACATCAGCCAGTG 59 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 1 2 2 80 15 36581668 36582521 CGGGATCAAGGTTATCATGG 58 36582562 36582582 GCCGATATGATTCCTACACTC 58 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 2 2 2 80 15 36579954 36579972 AGCTCTGCTGATAGCTTCC 59 36580015 36581518 GTAGAGGTGACAGAAACCCA 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699,ENSRNOT00000080324 2 2 2 80 2 196494258 196494276 TTGCCAATTATGTCCGAGC 59 196494320 196494491 ACATCTTGGCAGACTCCAG 59 NA Rattus norvegicus 81 Cysltr1 ENSRNOG00000037845 ENSRNOT00000042799 2 1 1 60 X 77675283 77675304 AATTCCGAAATCAGGTGTACTC 59 77675244 77675262 CCAAAGAAACCCACAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 2 1 1 80 2 218000424 218002199 ATAACAGAGTCTGGTACATGG 57 218002239 218002259 CACTAACAAAGTCTGCAATGG 58 NA Rattus norvegicus 81 Mir3597-2 ENSRNOG00000035628 ENSRNOT00000053751 3 1 1 67 2 11884716 11884739 CGGTTATCTAGCTTTATGAAGACC 59 11884672 11884693 GAAGCGAGTTGTTATCTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682408 ENSRNOG00000050215 ENSRNOT00000071981 1 1 1 118 20 3706725 3706743 GAAAGACTGGCTCCAACAG 59 3706598 3706616 TGAAGAACTTCCCTGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Gzmbl3 ENSRNOG00000046301 ENSRNOT00000045209 1 1 1 80 15 36112996 36113154 CTATTAAAGCTGAAGAGTAAGGCC 59 36112939 36112960 CTTCACTTTGAAGTTGCTTCTG 59 NA Rattus norvegicus 81 Vom2r47 ENSRNOG00000028345 ENSRNOT00000057657 1 1 1 90 2 155381621 155381641 GCAGGAATTATTGGATCAGGG 59 155378937 155381570 AAGTATAGCCCACCTGACTC 59 NA Rattus norvegicus 81 LOC100359563 ENSRNOG00000029843 ENSRNOT00000043008 1 1 1 60 8 93439785 93439806 GAATCTGAAAGTGAAAGGACCA 59 93439824 93439845 TCTGGTAGTGATTCTCAATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf17 ENSRNOG00000019479 ENSRNOT00000026344 3 1 1 86 5 136604719 136604739 TGCTCATATGATGACTGTGGA 59 136603478 136604671 GTAGGGCTTCTCACCTGTG 60 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 1 2 2 80 15 34356666 34356685 GCCATCCATAAGCACTACAG 59 34356727 34356898 GGCAGCTAGATACTCAAGAC 58 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581,ENSRNOT00000084758 3 2 2 80 8 64184030 64184049 ACCAGAACTGTAAAGCAGAG 58 64179762 64183987 GGTTACAGTTGTACCAGGC 58 NA Rattus norvegicus 81 Ybx1 ENSRNOG00000023786 ENSRNOT00000015875 1 1 1 80 5 138335748 138335768 CAATGTAAGGAACGGATACGG 59 138325080 138327199 TTCTTTATGGCCGTCTGGT 59 NA Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000059660 1 1 2 80 15 36470545 36470691 TGTTAAAGCTGAAGAGTAAGGC 59 36470486 36470504 GTTTCACTTTGACGTTGCG 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174,ENSRNOT00000084455 1 3 3 85 2 187848282 187848490 TACAGTGAGGAACTGCGTG 60 187848215 187848233 CTCTCAAACTCTCGCTGCT 60 NA Rattus norvegicus 81 Syap1 ENSRNOG00000004304 ENSRNOT00000006584 3 1 1 81 X 33559676 33560134 AAATCAAGAGGACGAAGAGGA 59 33560175 33560195 TAAGTTACAGGCATCAAAGGC 59 NA Rattus norvegicus 81 Ttc33 ENSRNOG00000013217 ENSRNOT00000017665 1 1 1 80 2 54903031 54921913 AAACAAACGGTATCAGGAGG 58 54921956 54921974 ATCTCATAAAGGGTGGCGT 59 NA Rattus norvegicus 81 Med8 ENSRNOG00000028477 ENSRNOT00000067237 1 1 1 60 5 137243340 137243598 TTCTAGAAGTCCATTCTAGGGA 58 137243619 137243637 AAGCTGACTTGATGTTGGT 57 NA DesignNoJunction Rattus norvegicus 81 Htr1b ENSRNOG00000013042 ENSRNOT00000017411 2 1 1 60 8 89130050 89130068 CGAGCCCAGTTGATAACAG 58 89130008 89130026 GGGAGTTAATGGAGGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ulk3 ENSRNOG00000038459 ENSRNOT00000025885 1 1 1 80 8 62373923 62374069 AAGGAGCAGATCAAGATCAGG 60 62374111 62374129 ACTTCGAACAGACTCCGAC 60 NA Rattus norvegicus 81 Olr1549 ENSRNOG00000057043 ENSRNOT00000083800 1 1 1 60 11 43487679 43487698 TCCCTCTATCTCAGGAAGCA 60 43487719 43487739 ATGACTGCATAAAGCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1549 ENSRNOG00000057043 ENSRNOT00000083800 3 1 1 60 11 43487680 43487699 CCCTCTATCTCAGGAAGCAG 59 43487719 43487740 TATGACTGCATAAAGCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1533 ENSRNOG00000054480 ENSRNOT00000046587 3 1 1 60 11 45616370 45616391 CAGAGGAATAACAGATCTTCCA 57 45616331 45616350 GATGAGGAAGAACACCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1340.1 ENSRNOG00000051108 ENSRNOT00000077007 1 1 1 60 1 132891870 132891888 CCAGAACCCATACCCTGAC 60 132891912 132891930 CGTGAGAAGACCTAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 3 2 2 80 2 57249180 57249198 TTCCACTGCCATTTCATCC 58 57249242 57250111 TGGATCCTAGCAACTTCCA 58 NA Rattus norvegicus 81 Olr453 ENSRNOG00000055374 ENSRNOT00000084321 3 1 1 60 3 73089838 73089859 TGACATACGGATCAACAAACTG 59 73089878 73089898 ACTGACAACTAATACAGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhcg ENSRNOG00000015526 ENSRNOT00000021109 2 1 1 80 1 141336222 141336243 TGCTCATTATGACCTTCTTCCA 60 141334481 141336183 CATCCTTTGCCTCTATCAGGT 60 NA Rattus norvegicus 81 Srpr ENSRNOG00000010543 ENSRNOT00000015177 2 1 1 80 8 36411528 36411548 ACAACTCTTTCACTCATGAGG 58 36411590 36411880 GAAAGCCAACCACAAACAC 58 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 1 2 2 80 3 110552673 110552692 TCTGTGACATCCACCATAGG 59 110552081 110552632 TTCTTTGACATCACACCTTCG 59 NA Rattus norvegicus 81 Cops5 ENSRNOG00000006499 ENSRNOT00000008877 1 1 1 80 5 8880400 8880894 TTTGTAGCAGTGGTGATTGAC 59 8880933 8880954 CTTTGGATATGTCCTAAAGGCG 59 NA Rattus norvegicus 81 Nop9 ENSRNOG00000020321 ENSRNOT00000027604 3 1 1 80 15 34438395 34438413 GCTTCCTTGTTGGCTTACG 60 34438455 34438636 CATTTCTACCTGATGCTCTGC 59 NA Rattus norvegicus 81 LOC684395 ENSRNOG00000048319 ENSRNOT00000072574 1 1 1 128 8 107107388 107129522 GCTTCCAGGAAAGTCTCTG 58 107129614 107129632 TTATGGAGGAAAGGCTCCC 59 NA Rattus norvegicus 81 Adam2 ENSRNOG00000017027 ENSRNOT00000066478 3 1 1 80 15 42741844 42746866 GCAGAAGTTTCAGAATATCTGC 58 42741785 42741805 GTACATGTGCTAACAATCACC 57 NA Rattus norvegicus 81 Atp11c ENSRNOG00000003472 ENSRNOT00000051319 3 1 1 80 X 143409315 143419775 CGAATCCAATTGCAAGACAC 58 143409254 143409273 GCTCGGAGATTATCAATGGA 57 NA Rattus norvegicus 81 AABR07012291.1 ENSRNOG00000029760 ENSRNOT00000064950 1 1 1 207 2 192381697 192381715 TGTCTTACCAACAGCAGCA 60 192305648 192305666 TCTGTGCACTTTGGAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Taar7b ENSRNOG00000046302 ENSRNOT00000021559 2 1 1 60 1 22519523 22519544 GAAACTGAACAGATCCTGTGTC 59 22519484 22519502 ATAAAGGATGAGGCGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 1 1 1 80 16 2546789 2549194 TCCTCTTCTTACAGCTGTTCTG 60 2549234 2549253 CGAAGATTGACATTCGCTCC 60 NA Rattus norvegicus 81 Scube3 ENSRNOG00000000500 ENSRNOT00000000593 3 1 1 80 20 7728043 7728674 ATTGCAAAGACGTGGATGAG 59 7728714 7728735 GGTAATTACCAGGGATGTTGAC 59 NA Rattus norvegicus 81 Fgg ENSRNOG00000025074 ENSRNOT00000034521 1 1 1 80 2 181993711 181993735 GAAGATAATTCCCTTCAACAGACTC 60 181993772 181994323 ATGTCTCCAACCTGTTTGGA 59 NA Rattus norvegicus 81 Ppp1r12c ENSRNOG00000053828 ENSRNOT00000086122 2 1 1 80 1 72923919 72923937 GAGGAGTCTGAGTCTCAGC 59 72923980 72924084 TGTCAAAGTTACACCCTGTG 58 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 1 2 2 80 1 83513153 83513172 GACCAAGCTGAAGCTTTCTC 59 83513213 83513375 GGCAAAGATCACACCATATCC 59 NA Rattus norvegicus 81 Mogat2 ENSRNOG00000027228 ENSRNOT00000035774 1 1 1 80 1 164196175 164196193 GGCCCATCCAATTCTTCAG 59 164186153 164196132 CAGCTGTCTTGACCAAAGAG 59 NA Rattus norvegicus 81 Ccdc32 ENSRNOG00000010472 ENSRNOT00000013963 3 1 1 81 3 110821158 110821176 GGATCGATTCCTCCAGGAG 59 110818207 110821115 GAAATGTTCCAAGGTGCTCTC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775,ENSRNOT00000064593 1 2 6 80 1 76515642 76517007 CCAAGTCAGGAACGAACTG 59 76515580 76515600 GCATAGATTGGATCCACTTGG 59 NA Rattus norvegicus 81 Ccdc66 ENSRNOG00000028380 ENSRNOT00000039311 3 1 1 80 16 3116337 3117422 AGAACACCAGAAAGCAATCAC 59 3116277 3116297 TCCTTCCTTCTCTGTTCTTCC 59 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 1 2 2 80 17 6799338 6799357 TCTGAAATGTTTGAAGCCGA 58 6799398 6802162 TTCATAATCCTGTCTGTGCTC 58 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165,ENSRNOT00000067331 2 2 2 81 5 27994540 27994558 TCTTTGGTCCTGAATTGCA 57 27990844 27994495 TGCAATCAAGGTAGAGCTC 57 NA Rattus norvegicus 81 Irf4 ENSRNOG00000061070 ENSRNOT00000088931 1 1 1 80 17 34896615 34896635 GGCCCAACAAACTAGAAAGAG 59 34892431 34896575 GAGCAAACACTTGTAGCTCTG 60 NA Rattus norvegicus 81 Ppp1r14b ENSRNOG00000021151 ENSRNOT00000051749 2 1 1 80 1 222231216 222231237 CATGGAAAGTGATGATACTCGG 59 222231506 222231617 GAGATGAAGGCCTCAGTGG 60 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116,ENSRNOT00000078856 2 2 2 81 11 47268415 47268435 GAGGAAGCAAATCTGGAACTC 59 47268475 47268623 CATTGTAAGCCTTTGCATTCAC 59 NA Rattus norvegicus 81 Flad1 ENSRNOG00000020642 ENSRNOT00000028030 3 1 1 80 2 188728445 188728464 GGACCTACAGAAACATCTGG 58 188728297 188728402 GTGATGTGTACCCTCTGTC 57 NA Rattus norvegicus 81 AC127217.3 ENSRNOG00000051586 ENSRNOT00000088386 3 1 1 60 1 172464645 172464663 TATGTGATGCCCAAGTCCA 59 172464603 172464623 TGTAGAACACAGAAACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 3 2 2 80 2 46983765 46983784 CCAATCAGTGGAGGATAGTG 58 46983825 46987452 TCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 Olr358 ENSRNOG00000059089 ENSRNOT00000091024 3 1 1 60 1 230079131 230079151 ATATACTTGCTGCCTAGCTCC 60 230079091 230079110 AGAACACAGATGCGATTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5e ENSRNOG00000011071 ENSRNOT00000015057 2 1 1 80 8 96007973 96008783 GAACAATGGTACCATCACCT 58 96008825 96008844 CCTTTCAATTGGACAAGGTC 57 NA Rattus norvegicus 81 Bmp3 ENSRNOG00000002381 ENSRNOT00000038872 1 1 1 80 14 12363240 12370206 TGCCAAAGTCTTTGAAGCC 59 12363178 12363196 CAGGAATCCCAGAGACGAC 60 NA Rattus norvegicus 81 Olr313 ENSRNOG00000029226 ENSRNOT00000043996 3 1 1 60 1 213426906 213426927 TCCAAGTCTAAGATTGTTCCTG 58 213426942 213426966 CATTAAAGCCATTGTATAGAGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 2 4 6 80 17 84141186 84142924 AGCATTCAGCAAATCTAAGGAC 59 84141127 84141145 CATCTCGGAAGGAGACCTC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 3 4 6 80 17 84141181 84142919 TCAGCAAATCTAAGGACCTACC 60 84141122 84141140 GTCACCATCTCGGAAGGAG 60 NA Rattus norvegicus 81 Sh3bp2 ENSRNOG00000013747 ENSRNOT00000058111 1 1 1 80 14 81437913 81438235 GTGGAAAGGTTGTTCAAAGC 58 81437852 81437870 CTTGGTAGAGGAGTTCCGA 58 NA Rattus norvegicus 81 LOC685505 ENSRNOG00000032860 ENSRNOT00000047929 2 1 1 60 9 65933116 65933137 CAATGATTTCTATGAGGAGCAC 57 65933155 65933176 GCAATTCCAGTTAATGTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsig10l ENSRNOG00000023411 ENSRNOT00000039446 1 1 1 83 1 98461416 98461434 ACCTCAGTGGAAACCTCAC 59 98459891 98461369 GCTGATGACTTGTTGAGCC 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027,ENSRNOT00000074298 3 2 2 80 1 212003567 212003589 GAGTGTGAATTAGATGCTCTGAG 59 212002926 212003528 GATAATCAGCTGCTCCTCGA 60 NA Rattus norvegicus 81 Cyp7a1 ENSRNOG00000009488 ENSRNOT00000012819 2 1 1 80 5 19366461 19368333 TTGGAATAAGGAGAAGGAAAGC 59 19366402 19366420 CAAATTTCAGAGCACAGCC 58 NA Rattus norvegicus 81 AABR07014265.1 ENSRNOG00000042380 ENSRNOT00000065071 1 1 1 84 14 6299137 6299158 CATGTGACCAATGTTGTAAAGC 59 6299203 6299305 TCATAGGGCTTTCCTCCAG 59 NA Rattus norvegicus 81 Umod ENSRNOG00000015557 ENSRNOT00000021027 1 1 1 80 1 189194742 189194763 CTTTGAATGCTCTTACCCTCTG 59 189192883 189194703 CTGATGTTCAAGGCACTAACC 59 NA Rattus norvegicus 81 Msl3 ENSRNOG00000004016 ENSRNOT00000065814 2 1 1 80 X 27019899 27019922 ACTATAGAGATCCCTGAAGTTCTC 59 27019959 27020629 TTTCACTAACCGCTTTCTCCT 60 NA Rattus norvegicus 81 LOC102554121 ENSRNOG00000048837 ENSRNOT00000071358 1 1 1 80 9 105253133 105262328 CGTGCTCTTTGGTATCTGG 58 105253071 105253090 GATCAAAGCCAAGGACTCTG 59 NA Rattus norvegicus 81 AABR07072463.1 ENSRNOG00000021843 ENSRNOT00000032631 1 1 1 64 15 41800256 41800274 CAAAGCTACATGGCCAAGG 59 41800302 41800349 GCCTGGTTTAAACCTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Oosp2 ENSRNOG00000036624 ENSRNOT00000042091 3 1 1 80 1 227998713 228010780 GTTGTTCATCTCGGAAGTCAG 59 227998653 227998673 TCATAAAGTGACTCTCGGGTG 60 NA Rattus norvegicus 81 Zfp954 ENSRNOG00000022742 ENSRNOT00000042086 2 1 1 80 1 69856262 69856282 CTTGATGACTCTCAAAGGCTC 59 69856323 69857409 AAGTTCAAGTCTCAGGGAGG 59 NA Rattus norvegicus 81 Taar8a ENSRNOG00000030414 ENSRNOT00000044098 3 1 1 60 1 22403743 22403761 TGGTGGTGATTTCAGTCCT 59 22403701 22403719 GCGATGAGGAAATTGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmcd1 ENSRNOG00000005690 ENSRNOT00000007523 3 1 1 81 4 144238934 144250818 AAGTGGAATATGTCTGTGAGCT 60 144250860 144250878 CTGTATCCAGCCCTGTCAG 60 NA Rattus norvegicus 81 Cyb561a3 ENSRNOG00000020702 ENSRNOT00000028094 1 1 1 80 1 226634144 226635814 TTCTGAAGGAGTTCTTGATCAG 58 226635855 226635873 ACATTGATCCCAGGGATCC 59 NA InUTR Rattus norvegicus 81 Kdelc1 ENSRNOG00000011740 ENSRNOT00000016285 2 1 1 80 9 50878148 50878166 AGAGTCCAGGGATATCGTG 58 50877966 50878105 ATATCCAGACTTACTCGGCC 59 NA Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 1 2 2 88 1 222319577 222319595 GGACAAGCAGCTGAATGAG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Abca13 ENSRNOG00000025645 ENSRNOT00000035612 1 1 1 80 14 89460256 89461034 GCAATTTGTTCAAGAAGTCCTC 59 89461075 89461093 AGTCTCCATCCTTCAGACC 58 NA Rattus norvegicus 81 Cts8 ENSRNOG00000040000 ENSRNOT00000061486 2 1 1 80 17 3389343 3389362 AACTATAGGGCCCATCTCTG 58 3389402 3396577 GGCTCATAATAAATGCCTCTCC 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408,ENSRNOT00000050010 3 2 2 80 1 224368629 224378168 TTATACTCACAAGGTGGCTG 57 224368568 224368589 TTAGTTCCTTTAAGCCCTTCTG 58 NA Rattus norvegicus 81 AABR07016566.1 ENSRNOG00000051648 ENSRNOT00000088356 1 1 1 90 14 104396400 104396419 AATTTCAGCACCCACATGAC 59 104396472 104397893 TCTGTGTTGCTACAGAGGC 60 NA Rattus norvegicus 81 AABR07016566.1 ENSRNOG00000051648 ENSRNOT00000088356 2 1 1 91 14 104396401 104396419 ATTTCAGCACCCACATGAC 59 104396473 104397895 CATCTGTGTTGCTACAGAGG 58 NA Rattus norvegicus 81 Fam122a ENSRNOG00000051051 ENSRNOT00000076544 3 1 1 60 1 242373278 242373297 ATCGATTTCATTCCGGTGTC 59 242373237 242373255 AACACTGCTTCCCAATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp777 ENSRNOG00000033639 ENSRNOT00000038517 3 1 1 93 4 77700175 77704263 CTGGTCTCTATGGACTATGCA 59 77700102 77700120 CAGAGTCCTCTTGCTCCTG 60 NA Rattus norvegicus 81 Gucy2e ENSRNOG00000015058 ENSRNOT00000020513 1 1 1 80 1 163414012 163414030 TGGCTGAAGAAGTTTGAGG 58 163414074 163416367 CATCTCCCGCATCTTTCTC 58 NA Rattus norvegicus 81 Ninj2 ENSRNOG00000010282 ENSRNOT00000013721 3 1 1 80 4 152631350 152731272 CATCCACCTTCAACACAGG 59 152731314 152731334 CTCTTCTTGGTGGCATAATGG 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 3 2 2 81 6 26356246 26357945 TGTTGCAGAGGTTCTCTGG 60 26356183 26356202 GACAGTGGTTGAGGAAAGTG 59 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 1 2 2 80 1 7314027 7316421 AGATGTTCTGGAAAGACATGGA 60 7313968 7313989 CTCTGCTTTAAGGAGTTGAAGG 59 NA Rattus norvegicus 81 Sema7a ENSRNOG00000007687 ENSRNOT00000010620 3 1 1 80 8 62741391 62743912 TTTACCTAACCACAGACAGGG 60 62743951 62743972 TGATGTTGAAGACAAAGCTGTG 60 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000080413 1 1 2 80 14 84164898 84165593 TCTCGGTCATAAACATGCTC 58 84164837 84164855 AAACTGGGCAAAGAAGTGG 59 NA Rattus norvegicus 81 Guca2b ENSRNOG00000008979 ENSRNOT00000012062 1 1 1 80 5 138696602 138697542 GTCTACATCAAGTACCATGGC 59 138696542 138696560 GGACATCTGCTTCTCTTCC 58 NA Rattus norvegicus 81 Sh2d1b ENSRNOG00000031599 ENSRNOT00000048692 3 1 1 95 13 88617068 88621061 CAGGATACAGACTGAGGCT 58 88621120 88621138 ACCACCAGTCCTTGATCTG 59 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675,ENSRNOT00000014030 1 3 3 80 4 156405134 156405459 TCTGTTGTCTGACTCCCTG 59 156405072 156405090 GGGTCAATGGATGTAGGGT 59 NA Rattus norvegicus 81 Olr1345 ENSRNOG00000047633 ENSRNOT00000049347 3 1 1 60 9 99680882 99680900 TCTTCCTCCTCTTCCTGCT 60 99680840 99680859 AGGATGATGGCTAGGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr46 ENSRNOG00000031171 ENSRNOT00000000552 2 1 1 80 20 5454877 5454895 GAAGCACAGGAGGAAGAGG 60 5454688 5454833 TCCTACCAGAAACCCAGGT 60 NA Rattus norvegicus 81 Rn60_X_0609.1 ENSRNOG00000003115 ENSRNOT00000004152 1 1 1 60 X 60292191 60292210 GTGAGTTCAGGTGGTTATGG 58 60292150 60292169 TTGATGACGATCCCTTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 2 2 2 80 17 9737250 9739466 CTCTGTGGTTCTCACTGTG 58 9739509 9739528 TGGATGCATTTGTGGTACAG 59 NA Rattus norvegicus 81 Prl8a4 ENSRNOG00000016803 ENSRNOT00000022614 1 1 1 80 17 39601852 39603163 CCTCCCTTCTCTGGAACAC 59 39603206 39603225 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Klk1c2 ENSRNOG00000029237 ENSRNOT00000025701 3 1 1 82 1 99983046 99983064 CAATGAATACCTCTGCGGG 58 99982110 99983003 CCTGGTAATTGTTGCTATAGCA 59 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000029244 2 1 2 83 1 144601246 144601266 TTAAGCCCTAAGGAGAAGGAC 59 144596262 144601201 ATAATCTGACCCGCAGGTG 60 NA InUTR Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608,ENSRNOT00000088327 2 2 2 81 2 188234193 188234211 CTCAGTCTCTGTCATGCTG 58 188232634 188234150 TTACCCAAAGATGAGCATCTG 58 NA Rattus norvegicus 81 AABR07016166.1 ENSRNOG00000050592 ENSRNOT00000070839 3 1 1 83 14 94776661 94776679 TGACAGCGACATCTTAACG 58 94776726 94776981 AGTACACGAAAGGCTTTGC 59 NA Rattus norvegicus 81 Prl7a3 ENSRNOG00000016616 ENSRNOT00000022381 2 1 1 80 17 39034652 39034672 TGTTTGATACTGCCACAAGAC 59 39034712 39035449 CTTCGTTGACTGCATACATCC 60 NA Rattus norvegicus 81 Dusp12 ENSRNOG00000003100 ENSRNOT00000004179 1 1 1 80 13 89263821 89263839 GACCCAACTACCGTTTCAC 59 89263493 89263780 ACGTCTAAATAAAGATCGCCTG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 2 2 2 80 X 39885420 39885439 GCAAATGGATGCATTGAGAC 58 39885480 39907538 GAGGACTGCTGAAATGTATGG 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578 2 2 5 80 7 115780730 115780899 CATCCAGATGATGACCCGA 59 115780942 115780961 GTCTGGATGACCTCTGAGAC 59 NA Rattus norvegicus 81 Ubqln3 ENSRNOG00000023833 ENSRNOT00000032587 3 1 1 110 1 169333743 169334041 CACAGCAGATTGCTGTGTC 60 169333651 169333669 AGCTGGGAATCCTGTACTG 59 NA InUTR Rattus norvegicus 81 Zfp28 ENSRNOG00000042777 ENSRNOT00000020523 3 1 1 80 1 71169037 71169651 CAACTTGTTCTCAGGCCAG 59 71168975 71168993 GTTACCCTTCCAGCATGTG 59 NA Rattus norvegicus 81 Olr465 ENSRNOG00000058567 ENSRNOT00000084229 2 1 1 60 3 73254811 73254831 AGAAGACCATCTCCTATGCTG 59 73254852 73254871 ATCACCAGAGCAATGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elavl3 ENSRNOG00000013752 ENSRNOT00000018416 1 1 1 80 8 23048207 23048434 GGATAAGATCACAGGACAGAG 57 23048147 23048165 GTGTTGATGGCTTTGTCTG 57 NA Rattus norvegicus 81 Atg3 ENSRNOG00000002094 ENSRNOT00000002906 1 1 1 80 11 60601487 60601507 TAGACACGTACCATAACACAG 57 60594464 60597653 TTATACTGTCCTTGCTTTCCAG 58 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000048344 ENSRNOT00000072062 2 1 1 60 8 42018250 42018269 TCTTCTATGGATCTGGGCTC 58 42018292 42018310 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir493 ENSRNOG00000036243 ENSRNOT00000054366 1 1 1 60 6 133699517 133699535 GGGCCTTGTACATGGTAGG 60 133699559 133699577 ACACAGTAGACCTTCACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565415 ENSRNOG00000033274 ENSRNOT00000041621 2 1 1 60 4 80313209 80313228 CACTTGAAGAGGAACCAGAG 58 80313168 80313189 CCAACGTCCATAATTTATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563941 ENSRNOG00000005918 ENSRNOT00000007754 2 1 1 62 8 52829275 52829293 AAGGAGATCTCAACCCGTC 59 52829319 52829337 TAACCAGGAAGCTGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1323 ENSRNOG00000053357 ENSRNOT00000079430 3 1 1 60 8 43676165 43676186 CCAATCGACTGTCATTATTCCC 59 43676206 43676225 GATGATGTTCTTCACTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddb1 ENSRNOG00000020715 ENSRNOT00000028188 2 1 1 80 1 226671568 226671587 GAATTGATGGGCTTTGTGGA 59 226671628 226673758 TGAGGTGATCTGGATAAGCTG 59 NA Rattus norvegicus 81 Nhlh1 ENSRNOG00000005166 ENSRNOT00000006862 2 1 1 195 13 90440088 90442856 GAGTCCTTCTAGGCTCCAG 59 90439911 90439929 GAGTTGAGCATCATGGTGG 59 NA InUTR Rattus norvegicus 81 Capn12 ENSRNOG00000020389 ENSRNOT00000027645 1 1 1 110 1 87067409 87067647 TTTCCACTTTCAGCTCTGG 58 87067721 87067739 TCGTTCCTTTGTTCTGAGC 58 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 1 2 2 80 17 18415769 18417038 GTTAGCATCACAACGTCCA 58 18415707 18415726 CAATGTGATGAAAGCAGGGA 59 NA Rattus norvegicus 81 Mrpl17 ENSRNOG00000019497 ENSRNOT00000050562 3 1 1 80 1 170653439 170653458 CTCATCGACTATGGAAAGCT 57 170653130 170653396 CAAGTCCTTCTCAGTGAGC 58 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 2 2 2 81 10 37285803 37286422 GGAGATGGAGAAACCCGAG 60 37285740 37285759 CATATTCTGGTGGCACAACG 60 NA Rattus norvegicus 81 Dydc1 ENSRNOG00000011165 ENSRNOT00000014862 1 1 1 80 16 18653708 18653731 CTGGATCCCATTGAATATTTAGCC 60 18653767 18654229 TTCTTTCTGTCTCAATTGCTCC 59 NA Rattus norvegicus 81 Tmem45al ENSRNOG00000042975 ENSRNOT00000002233 3 1 1 83 11 46080290 46080311 TTACTACTAATGCACTTCCGCT 60 46080349 46081309 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Tmem100 ENSRNOG00000002434 ENSRNOT00000003297 1 1 1 80 10 77537347 77540251 GCTGAGAAAGAGGCAATCC 59 77540295 77540313 TCTCGTTCAACTTCTGGGA 58 NA InUTR Rattus norvegicus 81 Tff2 ENSRNOG00000001162 ENSRNOT00000001537 2 1 1 90 20 9875296 9875909 AGAAACCTTCTCCCTGTCG 59 9875224 9875243 TTAAAGCACTGGTCACTGGT 60 NA Rattus norvegicus 81 Spata24 ENSRNOG00000019976 ENSRNOT00000040091 3 1 1 80 18 28452832 28452941 TTTGAGAAAGCGCTCTCCA 60 28452770 28452788 ATTGCACTTGGTGATGAGC 59 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 1 1 1 80 1 228420543 228420562 CACAAGACAGGAGACAAGTG 59 228420605 228421792 ACCTGTCACCTTTCTTGCT 59 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 1 1 1 97 4 157057952 157057971 TTGGAGTACATGACAAAGGG 58 157058031 157058130 GTAAAGCCTGACAGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Rbks ENSRNOG00000004710 ENSRNOT00000006452 3 1 1 83 6 26096558 26098866 AGAGTGAGGCTGAGATCCT 59 26098913 26098931 CCCGTTCTAGGAGAACCAG 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 3 2 2 83 18 33413701 33413720 CCAGACAAGTTACAGCATCG 59 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000076508,ENSRNOT00000041271 2 2 3 60 5 48290119 48290137 AGAATACCTCCATGAGCCC 59 48290160 48290179 GACGACCTTCTCTGACTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076535 1 1 7 166 1 215609112 215609742 AGAATCTAGGCTCAGAGCT 57 215609871 215609890 AGTAGCCTTGAAACTTAGGG 57 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 3 2 2 137 9 9984376 9985197 GCCAAGAAACACCAGACTC 59 9983267 9983285 CTGCTATGAGGAGGGTTCC 59 NA Rattus norvegicus 81 Ppp1r3e ENSRNOG00000014904 ENSRNOT00000019992 3 1 1 133 15 33536975 33536993 ATGATCGGACATAGAGCCG 59 33536860 33536879 CTATAAAGCTCAGGTTGCGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 2 2 2 80 15 42860326 42860344 CTACATGCAACGCTATGCC 60 42851662 42860284 TTGAAGAATCTCCTGAGCTCC 60 NA Rattus norvegicus 81 Mir3068 ENSRNOG00000035409 ENSRNOT00000053532 1 1 1 60 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468737 111468757 TGTTGGAGTACTGCAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307235 ENSRNOG00000015508 ENSRNOT00000020892 2 1 1 80 13 25687525 25689876 AGCCCAATAGGAAATTGTCAC 59 25689917 25689936 ATCCTAACCGACTATCTGCT 58 NA Rattus norvegicus 81 Prdm13 ENSRNOG00000007683 ENSRNOT00000010126 3 1 1 80 5 35829452 35829765 AGGAGGACAGATCTTCTATCG 58 35829392 35829412 GCCAAGGAGTTAGAATACCAC 59 NA Rattus norvegicus 81 Mtch1 ENSRNOG00000000527 ENSRNOT00000000635 1 1 1 80 20 6938344 6938529 TAAACAACTGTGGACTGCA 57 6938282 6938300 TCAAGTACTTCCAGCAGTG 57 NA Rattus norvegicus 81 Ccl1 ENSRNOG00000021851 ENSRNOT00000031360 3 1 1 80 10 69535231 69536627 ACTACCCAGCTGTAATATTCAG 58 69535172 69535190 GGTAATCTTGAACCCACGT 58 NA Rattus norvegicus 81 AABR07072539.2 ENSRNOG00000048350 ENSRNOT00000073070 1 1 1 80 17 15194472 15196201 CAATGGAGCACACTATTCCC 59 15196241 15196262 TTTCATAGGTTGTGATGGAGTC 58 NA Rattus norvegicus 81 St3gal6 ENSRNOG00000001653 ENSRNOT00000002255 1 1 1 80 11 44233011 44234197 ATTTCCCAAAGATCAGAAACCC 59 44234235 44234256 ACTTCACTGCATATGTGAAACG 60 NA Rattus norvegicus 81 Tchhl1 ENSRNOG00000009610 ENSRNOT00000038311 1 1 1 80 2 193807352 193807370 CAAGGAAGCAATGCTGACC 60 193807414 193807910 AAGACATGTGGCTGAAGGA 59 NA Rattus norvegicus 81 Tapbpl ENSRNOG00000027552 ENSRNOT00000038178 1 1 1 80 4 157736221 157737662 CAAACACAGAGCAAAGAGGAG 60 157736161 157736179 GAAGTCCCAGGAGCAAGAG 60 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 1 2 2 83 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 1 2 2 80 5 138181522 138181816 TTCCAATATGTGGAGCAACTG 59 138181855 138181876 GGTGAAGATGAAGAAGAGTACC 58 NA Rattus norvegicus 81 Sec13 ENSRNOG00000010628 ENSRNOT00000014377 3 1 1 81 4 145693411 145693826 ATGACTCCTCAGTGAACTCTG 59 145693350 145693368 ATGGCACCATCTGAACTCC 60 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 2 1 1 103 1 198690833 198690851 GAGATGCAGGAGGAGATGG 59 198690918 198700158 ACCTCCTTGTTGTCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Dpysl2 ENSRNOG00000009625 ENSRNOT00000012996 3 1 1 80 15 43537072 43539478 TGGGTTGATCAAGCAAATAGG 59 43537012 43537030 ATCACCATTCTGGAGTGGG 59 NA Rattus norvegicus 81 LOC363337 ENSRNOG00000042971 ENSRNOT00000041051 2 1 1 80 19 27861032 27861515 ATCCATGAAGAACAGGCCA 59 27860970 27860989 ATTGACATGACTGCCTCCTC 60 NA Rattus norvegicus 81 Agtr1a ENSRNOG00000018346 ENSRNOT00000038532 3 1 1 81 17 35909070 35948526 TGATCACCAGGTCAAGTGG 59 35909007 35909025 GCAGAAGAGTTAAGGGCCA 60 NA InUTR Rattus norvegicus 81 AABR07038349.1 ENSRNOG00000038383 ENSRNOT00000058456 3 1 1 80 X 46628503 46629812 TTCATTGTATTGCTCTGGAGAC 59 46628444 46628463 TCACATCCAAACAAACAGGT 58 NA Rattus norvegicus 81 Sucnr1 ENSRNOG00000014039 ENSRNOT00000018767 1 1 1 60 2 150212554 150212572 GCTATCGCTGAACAAACCT 58 150212594 150212614 GAGTACAGAGAAGATCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd9 ENSRNOG00000012951 ENSRNOT00000017566 3 1 1 80 15 44426497 44426703 TTCAAGGACAAAGGTGTCTG 58 44426744 44426764 TTCAAAGTACTCAGGACTTCG 58 NA Rattus norvegicus 81 Mllt1 ENSRNOG00000048736 ENSRNOT00000071211 2 1 1 81 9 10151251 10151270 GGGTCAGATGAGGATGACTC 59 10151314 10152804 TGAAGCTTAGCCTGGACTC 59 NA Rattus norvegicus 81 Farsa ENSRNOG00000003149 ENSRNOT00000004370 2 1 1 80 19 25976983 25977001 GCTCCCAATGGACTATGTC 58 25977042 25977153 CAGGTATACTTGTAGCCTTGTG 59 NA Rattus norvegicus 81 Brcc3 ENSRNOG00000048061 ENSRNOT00000071068 2 1 1 60 9 9865799 9865817 GAAAGAGGAGGTGATGGGT 59 9865757 9865775 GGACTCACTCCTTACGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 3 1 1 62 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478593 36479037 AGGTAGGATCTGAGAATTATCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Brd9 ENSRNOG00000015676 ENSRNOT00000021000 1 1 1 80 1 31967181 31967735 GTCGTACGAAGATTATACAGACAC 59 31967124 31967143 TCTGTCACTTCACTTCCTCC 59 NA Rattus norvegicus 81 Cdc42ep3 ENSRNOG00000032136 ENSRNOT00000048711 2 1 1 98 6 1924172 1942759 GAGACAGCTGGTTTCTCCT 59 1924092 1924110 AGGAGACAGGGTCTGAGAG 60 NA InUTR Rattus norvegicus 81 Primpol ENSRNOG00000022320 ENSRNOT00000029868 3 1 1 85 16 48875454 48880579 GCTTGTACAGCATGTCTGTG 60 48880627 48880645 TGCTGGAATCCAGGTTGAG 60 NA Rattus norvegicus 81 Mgmt ENSRNOG00000016038 ENSRNOT00000021537 1 1 1 80 1 209423625 209456920 CCAGCAAGATTCATTCACCA 59 209456960 209456981 TGCTGGTAAGAAACCATTTCTC 59 NA Rattus norvegicus 81 Mgmt ENSRNOG00000016038 ENSRNOT00000021537 3 1 1 80 1 209423622 209456918 GTTCCAGCAAGATTCATTCAC 58 209456958 209456978 TGGTAAGAAACCATTTCTCCG 58 NA Rattus norvegicus 81 Rfx7 ENSRNOG00000060367 ENSRNOT00000086841 2 1 1 84 8 79268286 79271510 CACCAGCAGGACTTAAAGG 58 79271555 79271576 GTCTTTACTTGAGGTTGAAAGG 57 NA Rattus norvegicus 81 Olr456 ENSRNOG00000061609 ENSRNOT00000092148 1 1 1 60 3 73138668 73138689 ATCTGGGTGGTTTCATTAACTC 59 73138708 73138728 CAGAAAGTCAAGGCAAATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcnp ENSRNOG00000028411 ENSRNOT00000039997 3 1 1 80 11 47061734 47061754 TTGGATTTGCCATAGGTAGTC 58 47061794 47064059 TTTCCTTAGGCTTACTTGCTC 58 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188,ENSRNOT00000079598 3 2 2 80 11 47224713 47224733 ATCAAGATGCCAATCAACTCC 59 47224774 47232864 TTCTGGGTCATCAGTTTCCT 59 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 2 2 2 80 10 40259737 40259755 AAGGAGGAGCTGAAGAAGC 59 40259214 40259695 CTCTTTGAGTGTTCTGAGCTG 59 NA Rattus norvegicus 81 Dab2 ENSRNOG00000028930 ENSRNOT00000050655 3 1 1 80 2 55766231 55766728 AGATTAATGAACCACCAAAGCC 59 55766767 55766787 GGTTCTCGAGTGAATTGTCAG 59 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 2 1 1 89 12 4267980 4267998 CCCTTATGGTCCACTTGGT 59 4268050 4297606 CATACAGACCTGGGAGTCTC 59 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 1 2 2 80 X 44976227 44979110 CTTCCAAGGACATACTAATGAGG 59 44979150 44979168 ATGTCATCAGAGCAGGAGG 59 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 2 1 1 80 8 42464875 42465362 ATCATGCAGGCTCTTCTATCC 60 42465402 42465422 CAAAGACAGCAGGATTCACAG 60 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 3 1 1 80 8 42461964 42462078 TTCCATATGGACATGAAAGCAC 59 42462119 42462137 AAGAATCTGCCACTCCCTG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464,ENSRNOT00000012634 1 2 2 80 14 85325324 85329495 GGTTGTCAAGATGAACAAGAG 57 85325264 85325282 TCACCTTTAGGCTTTCCTG 57 NA Rattus norvegicus 81 Rhag ENSRNOG00000050121 ENSRNOT00000072144 2 1 1 80 9 23469447 23470731 GGGAAGTCTACAGTGTCCA 58 23469385 23469404 CAAACCTCCAACAATTGCTG 58 NA Rattus norvegicus 81 Spib ENSRNOG00000019660 ENSRNOT00000026599 2 1 1 81 1 100535263 100536576 CACACTTAAGCTGTTTGTACC 58 100535202 100535222 CCATCTGAATCTGGGTAACTG 58 NA Rattus norvegicus 81 S100a4 ENSRNOG00000011821 ENSRNOT00000015958 3 1 1 83 2 189998569 189998590 ACAAGTTCAAGCTGAACAAGAC 60 189998634 189999309 CTTCGTCTGTCCTTCTCCC 60 NA Rattus norvegicus 81 Ifit1 ENSRNOG00000019050 ENSRNOT00000025770 1 1 1 60 1 252944724 252944745 CACCTTAAAGTTCTCCTTGCTC 59 252944764 252944784 TTTCTGCTTCATCTTGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a5 ENSRNOG00000011748 ENSRNOT00000015712 1 1 1 80 2 190004031 190005613 CTTGCAGAGAAGATGAAGGA 57 190005656 190005674 GAAGTCAATCTCCTGGTCG 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252,ENSRNOT00000001203 1 2 2 80 12 6292044 6292065 TAGTTTGGAATGTCATCTCAGG 58 6292103 6296532 CTTCTCTTTCTTCTCTAGGGTC 58 NA Rattus norvegicus 81 RGD1561333 ENSRNOG00000031381 ENSRNOT00000048691 1 1 1 60 1 273563858 273563877 AACCCAGAGACCAAGAAGAC 59 273563899 273563918 AGGAAATGACCTTCTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561333 ENSRNOG00000031381 ENSRNOT00000048691 2 1 1 60 1 273563859 273563877 ACCCAGAGACCAAGAAGAC 59 273563899 273563919 GAGGAAATGACCTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332,ENSRNOT00000083666 3 2 2 80 8 64490642 64493317 CATGGAACCCATGAGTACC 58 64493361 64493379 GAGAATGGGATCAGATGCA 57 NA Rattus norvegicus 81 Mxi1 ENSRNOG00000034078 ENSRNOT00000042822 3 1 1 81 1 274087213 274087231 AGCGGATACGAATGGACAG 60 274087273 274088382 ACATCCACTTCAATCTCCTCTC 60 NA Rattus norvegicus 81 LOC685160 ENSRNOG00000032131 ENSRNOT00000049860 2 1 1 80 19 29013792 29013813 AACTTAGAGATGGAGAACACTG 58 29013091 29013752 GTGCAGATTGCTAGAGAAGG 59 NA Rattus norvegicus 81 Emb ENSRNOG00000060329 ENSRNOT00000079907 1 1 1 80 2 49693369 49693390 GAGGAAATGATGGCTAAGTACG 59 49693427 49710776 TTCTGATACTCTGGTCTGTTCTG 60 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047286 ENSRNOT00000072353 3 1 1 60 8 42046479 42046499 CTTGTTTGTCCTGTTCTTGGT 59 42046521 42046539 CATCAGAGTCAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rapgef6 ENSRNOG00000009995 ENSRNOT00000013481 3 1 1 80 10 40027211 40027232 GATACTATTTCTGTAGCGTCCT 57 40027273 40033262 GAGTGTACAACCTTTGCGA 58 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 1 2 2 96 2 157758562 157759156 AGTTTCGAGATTGTTGCCA 58 157758484 157758505 GGTGGTGGAATACATTAATCAC 57 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 3 2 2 99 2 157758562 157759157 CAGTTTCGAGATTGTTGCCA 59 157758482 157758505 GAGGTGGTGGAATACATTAATCAC 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 1 2 2 80 16 83032497 83032517 GGGATGACATAAAGACGTTGG 59 83030169 83032456 CATTCTTCTCCTCGCTTCCT 60 NA Rattus norvegicus 81 Map2k6 ENSRNOG00000004437 ENSRNOT00000006217 1 1 1 80 10 98797065 98801593 TATCCATCGAGATGTCAAGCC 60 98801635 98801653 CCGCTGATTCCAAAGTCAC 59 NA Rattus norvegicus 81 Tmtc2 ENSRNOG00000004585 ENSRNOT00000006086 1 1 1 80 7 47312911 47312931 AATCATTGAGATCCAAGACGG 58 47276289 47312870 CACTCTTACGACCTGTTAGC 58 NA Rattus norvegicus 81 Loxl4 ENSRNOG00000015727 ENSRNOT00000021144 1 1 1 86 1 261843192 261844031 GCTATCAAGGACACCTGGT 59 261843124 261843142 CATTTCTGTGCCTGAGCAG 59 NA Rattus norvegicus 81 Trub2 ENSRNOG00000043189 ENSRNOT00000064638 1 1 1 80 3 8348651 8348669 CGCTGTCTATAAACCTCCG 58 8347701 8348608 GCATTGAGACCTTTAAGCAG 57 NA Rattus norvegicus 81 Eef1a2 ENSRNOG00000012477 ENSRNOT00000016947 2 1 1 80 3 176659367 176660460 TACAAGATTGGTGGCATTGG 59 176659306 176659324 AAAGGTCACCACCATACCA 59 NA Rattus norvegicus 81 Rab3d ENSRNOG00000011582 ENSRNOT00000015609 3 1 1 153 8 22926884 22926902 GATCAAGCTGCAGATCTGG 58 22926201 22926310 TTTAATCTGCGTAGCCCAG 58 NA Rattus norvegicus 81 Lce1l ENSRNOG00000042105 ENSRNOT00000065884 2 1 1 101 2 193165028 193165697 GCTGAACAGATTTACAGACTTCC 60 193164949 193164967 TTAGGAGTCTGGCACTTGG 59 NA InUTR Rattus norvegicus 81 Sh3gl2 ENSRNOG00000006761 ENSRNOT00000008999 3 1 1 80 5 103615247 103615266 AAAGTGAGTGAGAAGGTGGG 60 103615308 103623351 AACATCCACTTTCCTCTCCA 59 NA Rattus norvegicus 81 Tryx5 ENSRNOG00000028989 ENSRNOT00000048779 2 1 1 84 4 69157250 69157682 CAACTAAGGAAGTCTCAGCTG 59 69157186 69157205 TTGGTTATACCTGCTTTCCC 58 NA Rattus norvegicus 81 Cntnap5c ENSRNOG00000043185 ENSRNOT00000067198 1 1 1 80 13 7531294 7534820 TGTGCATTCTTCATTAGATCCC 59 7534861 7534879 ACTGCTGAGTCACTTTGGA 59 NA Rattus norvegicus 81 Ctsb ENSRNOG00000010331 ENSRNOT00000014177 1 1 1 82 15 46330956 46331696 CTCTTGTTGGGCATTTGGG 59 46331742 46331760 ACACCTCCACATTGACTCG 60 NA Rattus norvegicus 81 Olr1743 ENSRNOG00000000765 ENSRNOT00000000992 1 1 1 60 20 1845323 1845341 CTCTCCAAGATCATTGCCC 58 1845281 1845301 AGATGACAGGGTTAAAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp6 ENSRNOG00000011199 ENSRNOT00000058339 1 1 1 80 8 64454851 64454871 CGACGTTGAATGAGTACTGTG 59 64454913 64455540 TACAGACAGCTGGCTTGAG 59 NA Rattus norvegicus 81 Parp6 ENSRNOG00000011199 ENSRNOT00000058339 2 1 1 80 8 64447421 64447441 CTCCGAACAGAACCTATTGTG 59 64447482 64448059 AACCTCGATTGATGGTTCTG 58 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550,ENSRNOT00000091101 3 2 2 90 1 88961383 88961486 TATCTGAAGGACACTCACGA 58 88961539 88961557 CACCTCTCACCAACTTCAC 58 NA Rattus norvegicus 81 Hist1h2bg ENSRNOG00000021198 ENSRNOT00000028779 3 1 1 154 17 43688960 43688978 CATTACAACAAGCGCTCGA 59 43680386 43688842 GTCTACTCCTCTTGGCACG 60 NA InUTR Rattus norvegicus 81 Phip ENSRNOG00000008652 ENSRNOT00000011864 3 1 1 80 8 90422432 90423962 GCAGTTCCAGTGACTACTC 58 90422370 90422388 GAACTTTCTTTGGTGGCTG 57 NA Rattus norvegicus 81 AABR07018556.1 ENSRNOG00000049650 ENSRNOT00000045865 3 1 1 60 15 64939917 64939935 AACACATGGAAACAACCCT 58 64939957 64939977 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ints4 ENSRNOG00000012552 ENSRNOT00000016770 1 1 1 80 1 162447798 162451872 ACTAAAGTGGTTCAGCAACAG 59 162451913 162451932 GAGAGCAGCAGATTTACTCG 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000087449,ENSRNOT00000001264 1 2 2 91 12 9988107 9988424 CAAGAGCGCAATGATTGTG 58 9987917 9987938 CATAGACGAGTCTCGAATACAG 58 NA Rattus norvegicus 81 Snx18 ENSRNOG00000010971 ENSRNOT00000066764 1 1 1 80 2 45479088 45479106 CATGGACCTGTTAGCACTG 58 45457403 45479045 TTGGTAAGAGCTCCTTTCTG 57 NA Rattus norvegicus 81 Kctd11 ENSRNOG00000015669 ENSRNOT00000020970 3 1 1 60 10 56490830 56490849 CACATCCTCAATTTCCTGCG 60 56490789 56490807 CAGTTTCTCCATACCCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr459 ENSRNOG00000030662 ENSRNOT00000043965 1 1 1 60 3 73177827 73177846 TGACCTTGTATTATGGCTCC 57 73177786 73177806 AAAGAATAACTGGTACGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr459 ENSRNOG00000030662 ENSRNOT00000043965 3 1 1 60 3 73178533 73178553 CATTCTGTTGGGATTCACCTC 59 73178493 73178513 GAGAAACATCACAAACAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 1 2 2 80 19 30894736 30897989 GTCCAACGAAGATCAGAATCTC 59 30898028 30898048 TTATCTCCTTTGGGTTTGGTC 58 NA Rattus norvegicus 81 LOC100910553 ENSRNOG00000049652 ENSRNOT00000074265 1 1 1 60 15 35534768 35534787 CCAAGGGAAAGTGTCATCTG 59 35534809 35534828 GATCAAAGGATTCAGCATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690806 ENSRNOG00000043288 ENSRNOT00000067898 2 1 1 60 17 21339198 21339217 AAATTCAAGTTTCTGCGGGA 58 21339157 21339176 GCTCATTATCTCCTTCCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam173a ENSRNOG00000019684 ENSRNOT00000026641 2 1 1 196 10 15160507 15160900 AAGATCTCTGGAAGGTGAGC 59 15160176 15160194 ATAGGCCCAAACTCTGTCG 60 NA Rattus norvegicus 81 Bre ENSRNOG00000004364 ENSRNOT00000005855 1 1 1 80 6 25838388 25903946 ACCTTCTCAAGGATGTAAACGA 60 25838329 25838347 GGGTGGCTTCAGTATCCTC 60 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000043822 2 1 5 80 4 22145953 22145973 GACTGTTGTATCCTTGACCCA 60 22144703 22145913 ACTGAATTCCTGTAAGGTCCG 60 NA Rattus norvegicus 81 Plac8l1 ENSRNOG00000018820 ENSRNOT00000025453 3 1 1 90 18 36502515 36513063 AATCTCCGACTTGAGGAGC 59 36502443 36502462 AATAGCTGTGACTGTGGTCC 60 NA Rattus norvegicus 81 Kcnj11 ENSRNOG00000021128 ENSRNOT00000028685 2 1 1 60 1 102105000 102105020 TAGAAACCACAGGCATTACCA 60 102104960 102104978 CACAGAATCTCGTCAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 2 1 1 80 3 55294527 55294547 CTCCTGTTTGTCATGTTTGCT 60 55294586 55334163 TAATGTGGTATTCAACACCCAG 59 NA Rattus norvegicus 81 LOC100911479 ENSRNOG00000046634 ENSRNOT00000072854 1 1 1 60 10 44934140 44934161 TGAAGACACATCCCAATATGAG 58 44934182 44934200 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnc ENSRNOG00000007719 ENSRNOT00000011442 1 1 1 80 5 35869439 35869642 GAGATTCTATGCCAGGTATTCTC 58 35869681 35869700 ACTTTGGATGCCAGAAACAC 59 NA Rattus norvegicus 81 Ccnc ENSRNOG00000007719 ENSRNOT00000011442 3 1 1 80 5 35876550 35879502 CATGATAGCTTTAGCTTGCCT 59 35879543 35879562 ACAGAAAGTTCTGCAAACCA 58 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000046215,ENSRNOT00000040348 1 2 2 80 2 60602335 60657647 TTTAGGAAGAGCGACACGA 59 60602273 60602293 CTTCTCAGCATCTCCATTCTC 58 NA Rattus norvegicus 81 Socs1 ENSRNOG00000002568 ENSRNOT00000003458 2 1 1 224 10 4957792 4957810 CATTCGTGTGCACTTCCAG 60 4957998 4958016 AGTACCGGGTTAAGAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066440.1 ENSRNOG00000045945 ENSRNOT00000051043 3 1 1 60 9 8899040 8899058 CCACAGACTTAGGACCCAG 59 8898998 8899019 GACAGATATGACAAGATCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 2 2 2 80 9 66510826 66511915 TTACAGAAAGTTGGAGACAGG 58 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 LOC499276 ENSRNOG00000022900 ENSRNOT00000031258 2 1 1 92 1 201700927 201702530 GAAATTCTACAACTCGGTGGC 60 201700855 201700873 GAGTTCCCTCAGCATCCTC 60 NA Rattus norvegicus 81 Trpm2 ENSRNOG00000001216 ENSRNOT00000001631 3 1 1 80 20 11463302 11463320 GCCTCATGCACATCTTCAC 59 11463362 11463813 AGAAGACGTCCTTCATCATCC 60 NA Rattus norvegicus 81 Npr3 ENSRNOG00000019184 ENSRNOT00000025966 2 1 1 80 2 61924908 61936589 TTCTTCTTACGGAGATGGCT 59 61924847 61924866 GTTTGGAGGGATGAGTAAGC 58 NA Rattus norvegicus 81 AC093965.1 ENSRNOG00000032531 ENSRNOT00000019871 2 1 1 77 10 40323224 40323242 ACTTTAAGGCTTTCGCCAG 59 40323286 40323304 CTTCTTTCGCCCTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 AC093965.1 ENSRNOG00000032531 ENSRNOT00000019871 3 1 1 78 10 40323223 40323241 AACTTTAAGGCTTTCGCCA 58 40323286 40323304 CTTCTTTCGCCCTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp518b ENSRNOG00000028534 ENSRNOT00000037291 1 1 1 60 14 76869168 76869188 GTCATCGTGTTAAACCATCCT 59 76869207 76869228 TTACCTTCATCACATTGGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem68 ENSRNOG00000008872 ENSRNOT00000012215 3 1 1 84 5 16407344 16407363 TACTCTCACAACTTGTGGGA 58 16395753 16407298 CTTCATAACCATGCCAAACC 58 NA Rattus norvegicus 81 Entpd1 ENSRNOG00000014574 ENSRNOT00000054719 2 1 1 80 1 259808488 259808506 CGACAGTGTCTCCTCTCAG 59 259808550 259811528 GATGCCTTTACCTCCTCCC 60 NA Rattus norvegicus 81 Olr1463 ENSRNOG00000003210 ENSRNOT00000004282 3 1 1 60 10 45939294 45939315 CTCTTGTCCTTCTTCTACTGTG 58 45939255 45939274 TCAGAGTGTAGATGAGTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000074990 3 1 2 80 6 95392115 95392793 TTGGGAGAATTGACATTCTGG 58 95392055 95392073 TGAAGACATCCAGGTTGGT 59 NA Rattus norvegicus 81 Adamts12 ENSRNOG00000018865 ENSRNOT00000025693 3 1 1 80 2 61267398 61267417 TGACAGGAAAGGAGATCTGG 59 61267459 61268408 ACCTGGAATAGTAGCTGGAG 58 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000010468 ENSRNOT00000014155 3 1 1 83 2 234194586 234219854 GTCTTCAGTATATTCGGTGCTC 59 234194524 234194542 ACAAACTGACTGCTTCAGG 58 NA Rattus norvegicus 81 Armc8 ENSRNOG00000014521 ENSRNOT00000019536 1 1 1 80 8 107751214 107751234 TATGATGGACCGAATTGTGAC 58 107750851 107751173 AAACTGTGCAAACATCTGAC 57 NA Rattus norvegicus 81 Sarnp ENSRNOG00000030520 ENSRNOT00000009155 3 1 1 80 7 3275170 3295351 CCATCTCTAGAAAGTCTGAGG 57 3295393 3295411 TTCCAGCTGAACTTGTCAC 58 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 1 1 1 61 10 103870585 103873080 GAGGTGACCCGGATAAGTG 60 103870542 103870560 ATTGGAAGCTGCCAAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 3 2 6 80 1 262013551 262013570 GGACGGATGAGGAATTTGAG 59 262012005 262013508 GACAAGCCACAATCTCCTC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000082119 2 1 6 81 1 261999070 261999090 TGTTCTCACTCGTCTATCAGG 59 261996994 261999027 GTCCTCAGCCATCTGAAGG 60 NA Rattus norvegicus 81 Klk1c8 ENSRNOG00000048901 ENSRNOT00000072124 3 1 1 82 1 100038809 100038827 TAATGAACCGCAATGTGGG 59 100038870 100039843 CCTGGTAATTGACACTATAGCA 58 NA Rattus norvegicus 81 Prss53 ENSRNOG00000026040 ENSRNOT00000035672 2 1 1 80 1 199334161 199334297 AGAACACCAGTGATGTTTCC 58 199334100 199334120 TGTAGAGACAGTTACAGGTGG 59 NA Rattus norvegicus 81 Abca15 ENSRNOG00000027505 ENSRNOT00000037026 1 1 1 80 1 190081882 190081900 TCTCTTTCCACCTTTGCGT 60 190081942 190094274 CCTTCAGTAATGTACCCAGGA 59 NA Rattus norvegicus 81 Hn1 ENSRNOG00000003661 ENSRNOT00000004862 2 1 1 145 10 104064365 104064384 TAACATCTTTGGGACACCTG 58 104062214 104063392 CACTTTCTCCCTTGAGGTC 58 NA Rattus norvegicus 81 Slc22a25 ENSRNOG00000017964 ENSRNOT00000024234 1 1 1 80 1 224668222 224668240 TGGGACTTGTTCCGTACAC 60 224613243 224668184 CACAGATAACCATACCACAAATCTC 60 NA Rattus norvegicus 81 Pycr2 ENSRNOG00000003267 ENSRNOT00000004379 3 1 1 81 13 99185015 99185035 GTCGGCTCACAAGATAATAGC 59 99185076 99186200 CAGATTCACACCCATCTTCCT 60 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968,ENSRNOT00000047657 3 2 2 112 10 94958202 94958222 GGAGCTGTATGCGAATATCTG 59 94959513 94960916 CAAGGCCTTCTTGTTCTGTG 60 NA Rattus norvegicus 81 Rn60_X_0554.1 ENSRNOG00000029005 ENSRNOT00000050742 1 1 1 60 X 55114133 55114152 TCAAGGCAATATCATCACCA 57 55114092 55114110 GTTCACCATGTTCTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000041631,ENSRNOT00000027918 2 3 4 81 15 34751609 34752124 CTGGAGCTGAGGAGATTATCG 60 34752165 34752185 TCAGTGACGATCTTCAGAAGG 60 NA Rattus norvegicus 81 Ulk2 ENSRNOG00000002763 ENSRNOT00000003792 1 1 1 80 10 48073682 48073700 CTCTCCACGGAGTTCTGAC 60 48073369 48073642 AAAGGAGCTGTAGTCTTAGTAGG 59 NA Rattus norvegicus 81 LOC498155 ENSRNOG00000032693 ENSRNOT00000042421 2 1 1 81 12 17824788 17830620 ATGGTCAGGATAGCAGTTCC 59 17824726 17824745 ATGAGGAAGTGAGGAGATGG 59 NA Rattus norvegicus 81 AC126897.1 ENSRNOG00000051957 ENSRNOT00000083600 3 1 1 61 1 221994018 221994037 ATGGTGAGGTATTTCCTGGG 59 221993973 221993991 AAGGCTGTGAACACTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Ccdc84 ENSRNOG00000012137 ENSRNOT00000016227 1 1 1 80 8 48732477 48732570 GGATGAGGTGATTAAAGAGATGG 59 48732419 48732438 TCTAAGACAGATCGGACCAC 59 NA Rattus norvegicus 81 Csf2 ENSRNOG00000026805 ENSRNOT00000032333 1 1 1 85 10 39603060 39603789 GAGTTCTCCATCCAGAGGC 60 39602993 39603011 TTGAGTTTGGTGAGGTTGC 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629,ENSRNOT00000029487,ENSRNOT00000027933 2 4 4 80 1 82330015 82331102 CCTAACAAGGTGGATGACG 58 82329953 82329971 TGAAGAGGCTGAAGTTGGT 59 NA Rattus norvegicus 81 Lhcgr ENSRNOG00000016712 ENSRNOT00000022481 3 1 1 80 6 12527079 12527464 CAGTGTAAAGGCAATTCTGGG 60 12519246 12519264 TCCACTGTGCATCTTCTCC 59 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000046941 ENSRNOT00000071638 2 1 1 80 13 27653530 27653549 CCAGAAAGGAACAGTAGAGC 58 27652379 27653488 ATATCTGCTCCTGCATACAC 57 NA Rattus norvegicus 81 Tm4sf1 ENSRNOG00000015812 ENSRNOT00000021535 1 1 1 80 2 147389863 147389882 CAGAAGGACCAAAGTGTAGC 59 147385944 147389821 AATCCAGAAGGTACTGTCCC 59 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000023477 2 1 2 80 1 211255804 211255824 GACACCACAAGATACCAACAG 59 211251536 211255765 TAATCTTCCTCAGACAGAGTGC 60 NA Rattus norvegicus 81 Necab1 ENSRNOG00000007256 ENSRNOT00000009718 1 1 1 80 5 28737431 28737450 AACTCCTCAGAAGAGCTCAG 59 28729998 28737390 GTCTGCTCTCCTCAGTATGTC 60 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000047259 ENSRNOT00000071158 3 1 1 60 10 12490193 12490214 GAACCCTTTCATCTATAGCCTG 58 12490154 12490173 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 1 1 1 119 2 192283345 192288480 CAAAGTGCCCTGAACACTG 59 192283244 192283262 CTGGACACTTTGGAGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 3 1 1 80 18 48300148 48300167 TCTAAACACGTCAGGAACTG 58 48300209 48346224 GATGACGGCCTGTAAATAGG 58 NA Rattus norvegicus 81 Trim35 ENSRNOG00000009449 ENSRNOT00000012528 3 1 1 82 15 42966519 42966537 GTACTTCGGGAGAAAGCCA 59 42966582 42969601 GTTGTCTGCACCTCATTGTG 60 NA Rattus norvegicus 81 Zc3h3 ENSRNOG00000007684 ENSRNOT00000010120 3 1 1 82 7 116840639 116868081 CAAGGAAGCTTCCAATGCG 60 116840575 116840593 GGGTCTTCTTGACAATGCG 59 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 1 2 2 80 8 48668967 48670197 TGGAATTCAAGAGTATTCGGG 58 48668907 48668926 GGATAATGGCACTGAACTCC 59 NA Rattus norvegicus 81 Eif4enif1 ENSRNOG00000018475 ENSRNOT00000024993 1 1 1 80 14 83454198 83454216 CTCCTAAACCCTCGTCCTG 59 83454260 83454734 TGGAGGATGCAGAACTGAG 59 NA Rattus norvegicus 81 Olr163 ENSRNOG00000046945 ENSRNOT00000075652 2 1 1 60 1 169698852 169698870 ACCATACCTACTGTGACCA 57 169698894 169698912 TTCACCTTGACATTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r77 ENSRNOG00000049443 ENSRNOT00000072966 2 1 1 80 9 7749985 7772763 TCAAATGCCACAGATCTAGC 58 7749924 7749942 TGGGAAGCAGTGATTTCTC 58 NA Rattus norvegicus 81 Vom2r77 ENSRNOG00000049443 ENSRNOT00000072966 3 1 1 80 9 7749983 7772761 AAATGCCACAGATCTAGCAC 58 7749922 7749942 TTTGGGAAGCAGTGATTTCTC 59 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589 2 1 2 81 10 95243361 95243379 TCCGCGTGCATATACTAGC 60 95243423 95244269 ACAATATACCTGCTTCCGGG 60 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000080460 1 1 2 60 10 95243370 95243390 ATATACTAGCCCTGGACTCCT 59 95243409 95243430 ATACCGGGTTTAAATTCTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000080460 2 1 2 60 10 95243373 95243391 TACTAGCCCTGGACTCCTC 60 95243412 95243433 TCGATACCGGGTTTAAATTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0040.8 ENSRNOG00000056715 ENSRNOT00000086520 1 1 1 60 20 1931359 1931377 TCAGATACCTCCCACCCTC 60 1931398 1931419 AAGAAAGTCATCTATCTGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642,ENSRNOT00000083851 2 2 2 83 20 12070370 12074051 AGTGATGACCACAGGTACAG 59 12074097 12074115 ATGTATTCGCCGTTGATGC 59 NA Rattus norvegicus 81 LOC691995 ENSRNOG00000059827 ENSRNOT00000082511 3 1 1 69 10 57670101 57670119 GATATGGCTGGATGCTGGA 59 57669972 57669990 TCCGTTCTGCTTACTCAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hbq1b ENSRNOG00000028114 ENSRNOT00000035459 1 1 1 80 10 15600506 15600524 TCTCTGTCTGCTCTCAGTG 59 15600336 15600464 CAGACAGTGGCTAAAGAACTG 59 NA Rattus norvegicus 81 Ndufb3 ENSRNOG00000011825 ENSRNOT00000016060 3 1 1 81 9 65478750 65484011 CATTGCTGTCAGACATGGC 60 65484053 65484074 TGTCTGTAATCTGGAAGTTCCA 59 NA InUTR Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 2 3 3 80 1 32118935 32118956 TCATCAATAATGTGGAGGTGGA 59 32118456 32118894 TGCTGTCCATCTCTTCCTC 59 NA Rattus norvegicus 81 Lysmd1 ENSRNOG00000021099 ENSRNOT00000028640 2 1 1 111 2 196305051 196305069 GTACAATCATCCTGCTCCC 58 196305144 196308047 TAATCTGCTCCATCGTCAC 57 NA Rattus norvegicus 81 Lysmd1 ENSRNOG00000021099 ENSRNOT00000028640 3 1 1 112 2 196305050 196305068 GGTACAATCATCCTGCTCC 58 196305144 196308047 TAATCTGCTCCATCGTCAC 57 NA Rattus norvegicus 81 Arnt2 ENSRNOG00000013017 ENSRNOT00000017636 1 1 1 80 1 146456056 146456074 GTGAAAGAAGGAGAAGCCC 58 146440713 146456012 TATGCTCATTCCTGCTGGT 59 NA Rattus norvegicus 81 Vamp5 ENSRNOG00000012659 ENSRNOT00000016984 1 1 1 83 4 100232477 100232495 ATTTCGACAAGGTCCTGGA 59 100231719 100232430 AGGCAGAACTCATGTCCAG 59 NA Rattus norvegicus 81 Mog ENSRNOG00000000775 ENSRNOT00000001008 1 1 1 80 20 2009183 2009203 TCTCTGTAGGCCTTGTATTCC 59 2010101 2010407 TCCGATGGAGATTCTCGAC 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 1 5 5 80 13 47424739 47424759 GGTATCCAGAGGAATTTGCAC 59 47424016 47424697 CCAGGTCCTGGTATGACTC 59 NA Rattus norvegicus 81 Filip1l ENSRNOG00000001645 ENSRNOT00000046383 3 1 1 80 11 45117233 45123148 AAACCCATGAACGAGTTGG 58 45117171 45117192 TACCATTAAGAGTTGTTCCACG 59 NA Rattus norvegicus 81 Vom1r41 ENSRNOG00000029852 ENSRNOT00000049350 1 1 1 60 1 67743329 67743349 CTTCCAAGCAATCACAATCAC 58 67743367 67743389 GACTCTGTGTTTAAGCATCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597,ENSRNOT00000091606 3 3 3 64 1 101692628 101692646 CTTCCTCCTTGTCCCATGG 60 101692674 101692692 GTCTGCATCATGACGTTCC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Olr1148 ENSRNOG00000006584 ENSRNOT00000008605 2 1 1 60 8 19548916 19548937 CCTAGTATTATTGTCCCTGCTC 58 19548954 19548976 CAACAGAAGAGTATGGAGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr63 ENSRNOG00000018551 ENSRNOT00000025027 2 1 1 60 1 167871292 167871310 TATCTGCTGGTTCCTCCTG 59 167871331 167871352 GGATCTCCTTTGTCTTTACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310335 ENSRNOG00000039183 ENSRNOT00000033837 3 1 1 80 11 54401637 54401657 TGAAGACCCAAACATAAGTGC 59 54399927 54401599 CGGGTTTCATTATCTATAGCCAG 59 NA Rattus norvegicus 81 Ssr2 ENSRNOG00000019940 ENSRNOT00000027123 3 1 1 83 2 187952596 187952614 TTCCTTCCCTCCAGAAGAC 58 187952661 187955601 GAGACATTGCTAGCAGGAG 58 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 3 1 1 98 8 118891401 118892279 GTGTATTCAGATACAGCCCTG 58 118891323 118891343 AAATAGGGAGGAGGTATTGGG 59 NA Rattus norvegicus 81 Prkce ENSRNOG00000015603 ENSRNOT00000020959 1 1 1 80 6 9880216 9938389 GATCTACAGGGATTTGAAACTGG 59 9938429 9938447 TTGCACATCCCAAAGTCAG 58 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 3 2 2 80 5 152375722 152375740 CAGCTCATCAGGGAGTCTC 59 152371302 152375680 ACCTTTAACCCTTTCCTCCTG 60 NA Rattus norvegicus 81 AABR07035375.1 ENSRNOG00000046761 ENSRNOT00000071795 2 1 1 136 12 11808211 11808884 AATGACTGTTCAGATGGAGAG 58 11808095 11808113 CTGGTCTCAGGAACTTGAG 57 NA Rattus norvegicus 81 Foxn2 ENSRNOG00000040110 ENSRNOT00000061693 3 1 1 80 6 12179706 12179724 GGAAGAATTCTGTTCGGCA 58 12179768 12188463 TTCCATTAACCTTGCCGTG 59 NA Rattus norvegicus 81 Vom1r53 ENSRNOG00000049902 ENSRNOT00000038977 3 1 1 60 1 66397834 66397855 CATCATATCAAACCACCTGGTC 59 66397875 66397894 CAAAGAGGTCACTGTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.2 ENSRNOG00000050915 ENSRNOT00000074153 2 1 1 132 8 69530709 69530733 CTCTGACAACATACGTATATCTGTG 59 69489040 69489061 GAACAGTGCACAGATTATACAC 58 NA DesignNoJunction Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965,ENSRNOT00000063861,ENSRNOT00000084678,ENSRNOT00000042654 2 4 5 80 X 64307683 64311422 CCAAGACCACAGTGATTACAG 59 64307623 64307642 TTGCGTTCATTGATCTGCTG 60 NA Rattus norvegicus 81 Eid2 ENSRNOG00000019310 ENSRNOT00000026114 3 1 1 60 1 85516717 85516738 CGTTTACTATAGCCCTAACTGC 59 85516678 85516700 CAACCCAGTTCTTCTATTAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a44 ENSRNOG00000025269 ENSRNOT00000068360 1 1 1 81 2 187782806 187786333 GAGCCAGACAGAAGGTCTC 60 187782743 187782761 TCTTCTTGTCCAGGTGCTC 59 NA Rattus norvegicus 81 Slc25a44 ENSRNOG00000025269 ENSRNOT00000068360 2 1 1 82 2 187782806 187786333 GAGCCAGACAGAAGGTCTC 60 187782742 187782760 TTCTTCTTGTCCAGGTGCT 59 NA Rattus norvegicus 81 Rn60_3_0430.2 ENSRNOG00000006829 ENSRNOT00000008925 1 1 1 60 3 37875826 37875845 ATGTGTTTGACAAGGAAGGG 58 37875785 37875806 GCTAGGACATGATGGATTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 3 1 1 60 20 2332208 2332226 CTACAAGCCTGTGAAGCAC 59 2332248 2332268 GATAAATTGGGAGGAGTGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 1 3 3 82 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 3 2 2 80 12 13897007 13897026 GGGTTCTCATTCCTATGGAC 58 13897069 13897755 CCACACGGTATATGTCAGG 57 NA Rattus norvegicus 81 Mageb5 ENSRNOG00000003110 ENSRNOT00000004145 1 1 1 80 X 60850237 60852486 CTACTGAAGACTATACTCCTACCT 58 60850180 60850198 ATTCTTCAAGCGTTTGCGA 59 NA InUTR Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 2 1 1 80 17 15085052 15085071 GAGTTCCGTGTGAAATCTGG 59 15084702 15085010 CAGCTGATCTATCGTTCCTG 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000080122 1 1 3 61 20 2099718 2100541 ATTCCCAAGCTGACCTGAC 60 2099675 2099694 AGAGGAGATGAGCAGATCAC 59 NA DesignRelaxed Rattus norvegicus 81 Xbp1 ENSRNOG00000010298 ENSRNOT00000014044 1 1 1 80 14 85754791 85756265 GTGGATTTGGAAGAAGAGAACC 59 85756305 85756324 CTCAATCACAAGCCCATGAG 59 NA Rattus norvegicus 81 LOC100911963 ENSRNOG00000049277 ENSRNOT00000028265 3 1 1 113 1 88776033 88776681 AGCCTCAGGACAAGAAGAG 59 88776850 88776868 GGAGAAGGAGGAAGGTCAG 59 NA Rattus norvegicus 81 Tmem185a ENSRNOG00000011047 ENSRNOT00000066919 3 1 1 80 8 69586407 69593030 TCAACCCGAGTAAATTCCTC 57 69586346 69586364 GAATGATGCCATCCAAACG 58 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000067093 3 1 2 82 1 220047525 220047543 GCCTTTGTACACATGGAGC 59 220040137 220047480 CACATCCCACCTTGAAACTC 59 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201,ENSRNOT00000024414 1 2 3 80 4 118500977 118503799 TAGCATTTAGATTGCGCTTGG 60 118500917 118500936 TCAGGATTTGGTAGCCAGTC 60 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201,ENSRNOT00000024414 3 2 3 80 4 118521721 118521742 AGATGACGTCTTAATAAAGCCC 58 118518704 118521682 TGTATCAAACCATCCAACTGC 59 NA Rattus norvegicus 81 Slamf1 ENSRNOG00000059073 ENSRNOT00000082393 1 1 1 80 13 90206149 90206169 GGGTCATCATATTCGTCATCC 59 90206209 90210495 GATTTGGTTTACCACTGGGAG 59 NA Rattus norvegicus 81 Slamf1 ENSRNOG00000059073 ENSRNOT00000082393 3 1 1 80 13 90206150 90206171 GGTCATCATATTCGTCATCCTG 59 90206210 90210496 TGATTTGGTTTACCACTGGGA 60 NA Rattus norvegicus 81 Tra2a ENSRNOG00000009156 ENSRNOT00000012325 2 1 1 80 4 78910088 78910106 TATGATCAGCGAACTGGGA 58 78908397 78910046 TTCCATAGCCTCCTTAGAGTC 59 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 3 2 2 75 1 84893943 84894773 TGGTTCAGTGACATTTAGGG 58 84893887 84893905 CTTCTGAGTAGCATCCAGG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1359290 ENSRNOG00000027271 ENSRNOT00000029782 3 1 1 80 10 95642771 95642792 CACCAAGTATCTGAAGGATGTC 59 95642833 95642944 GCATTACTCTCGACTCCAC 58 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 3 2 2 90 9 67781907 67781925 TACAGATCCAGTGTGCACG 60 67781978 67784176 AGGTCATACCTGCAAGTCTG 60 NA Rattus norvegicus 81 Nde1 ENSRNOG00000058007 ENSRNOT00000086392 1 1 1 80 10 895953 895971 CAAGCTGAAACCAGAAACC 57 893866 895911 AAACTTCTCCTTCACAGACTC 58 NA Rattus norvegicus 81 Gda ENSRNOG00000018282 ENSRNOT00000024775 2 1 1 80 1 238983418 238984861 GTGATATTTCTGAGGCTGTTATCC 60 238982623 238982642 TTCCACCCACATAAACCTCC 60 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 3 1 1 80 10 56487742 56487760 CTGTACAACTGCTCCACCT 59 56487594 56487698 CAGATCGTGACTTCCTGGG 60 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 3 1 1 80 4 182678307 182687884 GAGTCCTTATTCAGGTCTGG 57 182678246 182678264 GTCTTTGAGGAAATTGGCG 57 NA Rattus norvegicus 81 Olr621 ENSRNOG00000060243 ENSRNOT00000084665 1 1 1 80 3 76662522 76662545 CCTTAAGATTACCATTCGGCC 59 76662587 76662605 CCATGCAGGCAAGTTTCAG 60 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 2 3 3 80 9 10658953 10658973 GCTCAGACATTCTATGAGGTC 58 10658811 10658911 GTCTCTGCTTGTGATGCTC 59 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 1 2 2 80 13 45316571 45318789 GCATTGCCATGGAAATATACAC 59 45316512 45316530 AGGGTTCCTTGTTGGAGTC 59 NA InUTR Rattus norvegicus 81 LOC688828 ENSRNOG00000037305 ENSRNOT00000056435 1 1 1 80 8 113688281 113689064 CCATGGACTAGAGGTCTTGG 59 113688220 113688238 AGAAATGCAGGTAGGCCTC 60 NA Rattus norvegicus 81 Nudt9 ENSRNOG00000002186 ENSRNOT00000002973 3 1 1 80 14 7044382 7045494 TCCTATTATAACCAGGTGGAAGAG 59 7044325 7044344 AACTGCAAGATGCATTTCCC 60 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 2 2 2 82 7 70617610 70617710 AGAACTTCCAGTCGGTGTG 60 70617756 70617774 GGTCTCTTTGCGATTAGCC 59 NA Rattus norvegicus 81 Ggt1 ENSRNOG00000047697 ENSRNOT00000074533 3 1 1 80 20 14021540 14022545 ATGTGTCTCAGGTCATCCG 59 14021478 14021498 GAGTGGTTTCATCAGTGATGC 60 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964,ENSRNOT00000039953 2 2 2 80 4 10456688 10457222 CAAGAATTCCTAATTGCGTCCT 59 10456629 10456648 AGAGGAGTAGGGTAAGAGCA 59 NA Rattus norvegicus 81 Olr310 ENSRNOG00000045726 ENSRNOT00000074710 2 1 1 60 1 213348736 213348755 GTGCTCAGTGCCTATATCAG 58 213348775 213348796 AGGTAAACTTGCTTCTTTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0657.1 ENSRNOG00000023194 ENSRNOT00000046071 2 1 1 60 6 56069945 56069964 GTCTCGTGGACCTTACTCTC 59 56069904 56069922 ACTCTTGTTCTGAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 1 1 1 80 11 67451719 67452326 GATTGCTGACAAGGTCAAGC 60 67452368 67452387 ACTTTATACTGGACGGCCTC 59 NA Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 2 1 1 80 11 67451720 67452326 ATTGCTGACAAGGTCAAGC 59 67452369 67452388 AACTTTATACTGGACGGCCT 59 NA Rattus norvegicus 81 Mrpl48 ENSRNOG00000018042 ENSRNOT00000024290 3 1 1 80 1 165579054 165579074 GACTCTAGCAGAAAGTTACGC 59 165568449 165579013 ATCGCATAACTTTCCTCGAC 58 NA Rattus norvegicus 81 Upb1 ENSRNOG00000038258 ENSRNOT00000058237 2 1 1 80 20 14167688 14169304 GACTTTCAAGATGACGGGC 59 14167626 14167645 ATGTTGGGACTGTAGTTGGG 60 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000011494 ENSRNOT00000057222 3 1 1 82 X 105404877 105404896 GCAGATCTAAGAGGATGCTG 58 105404941 105405273 GATCACTTGGCCCTTTCTC 58 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237,ENSRNOT00000058663 1 2 2 80 15 51364424 51365053 CAATTGTCACGTAGGTGGAG 59 51365093 51365114 AGCTGATTATTTAGGAGTCCAC 58 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 2 2 2 81 16 19913525 19913645 ACCCATTGATCCAGCTAGC 60 19913462 19913481 GACAGCAGGGTTGACTAGAG 60 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 3 2 2 84 16 19913530 19913650 CCTCCACCCATTGATCCAG 60 19913464 19913482 CAGCAGGGTTGACTAGAGG 60 NA Rattus norvegicus 81 Adgrf3 ENSRNOG00000024766 ENSRNOT00000032829 1 1 1 80 6 27538120 27538138 GTTCCAGACGTCCAATGAG 58 27538180 27539835 ATGCTTTCATACTCACCTGTC 58 NA Rattus norvegicus 81 Ammecr1 ENSRNOG00000022166 ENSRNOT00000042639 1 1 1 80 X 114232511 114232529 TGTGCTCTACTGTCACCTG 59 114183311 114232468 GTTACAAACAGTGGGTAGGG 58 NA Rattus norvegicus 81 Hook1 ENSRNOG00000026226 ENSRNOT00000012396 1 1 1 80 5 114989759 114991258 GGAAACTGAGCAAAGGTTGAG 60 114991298 114991318 TCTTGTAACGACTTCTGGAGG 60 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215,ENSRNOT00000044390 3 2 2 80 1 214063743 214065007 ATGATGTGGACCAAGGGTG 60 214062890 214062908 CTTCAAACAGAAGCCGAGG 59 NA Rattus norvegicus 81 Fam92a1 ENSRNOG00000016338 ENSRNOT00000022249 3 1 1 80 5 25743978 25747339 GACATGTAATTTCGCAGGCA 59 25743917 25743936 TTTCCTCCAGATGACGAGTG 60 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517,ENSRNOT00000077532 3 2 2 80 9 12640632 12640650 TGGAGTAGTCCAAATGCTG 57 12640692 12641905 AGGATATGCCTGAACATACTG 57 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 2 1 1 80 18 51643524 51648162 TCTGGGCAGATATTCCTGC 59 51643462 51643481 GTAATTGGATCTTCTCCCGC 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000010452 ENSRNOT00000014058 2 1 1 125 4 80332171 80332295 GAACAAAGGTATCACCTGGG 58 80332065 80332084 ATTAGGTCTGCCCTTTCTCC 59 NA Rattus norvegicus 81 Dbil5 ENSRNOG00000007771 ENSRNOT00000010227 2 1 1 80 10 64376033 64376503 CGTCTACTCACAGTACCAGG 59 64376545 64376564 TTTCAAACTCCACTTGGCTC 59 NA InUTR Rattus norvegicus 81 Dbil5 ENSRNOG00000007771 ENSRNOT00000010227 3 1 1 80 10 64376034 64376504 GTCTACTCACAGTACCAGGT 58 64376546 64376565 ATTTCAAACTCCACTTGGCT 58 NA InUTR Rattus norvegicus 81 Ttyh1 ENSRNOG00000032699 ENSRNOT00000068459 1 1 1 80 1 73741506 73741524 CTAGCCAGCATCCACTCTC 60 73741025 73741462 TAACAAGGGCTTCTGTGCA 60 NA Rattus norvegicus 81 Mansc4 ENSRNOG00000036925 ENSRNOT00000055463 3 1 1 80 4 181477107 181477127 AGTTCCTCAAGTACTACTCGG 59 181472356 181477068 CATTACAGGAAACATCCTTCCG 60 NA Rattus norvegicus 81 Ddx31 ENSRNOG00000013040 ENSRNOT00000064323 2 1 1 80 3 7427777 7428587 TCCACCCACATCTAATTTCC 57 7430096 7430114 CTGGGATACTCTGCTTCTG 57 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000076276 2 1 3 80 14 60069712 60069731 GCTTCATCTCTATGGTCGGA 59 60060090 60069671 GCTCCTTCTGGTATTCTTCCA 60 NA Rattus norvegicus 81 Sema5b ENSRNOG00000002238 ENSRNOT00000030074 1 1 1 80 11 68307653 68307972 AGATTCCTGTCATCCTGCC 59 68307216 68307236 TGACTATCAGGTGGATGAGAC 59 NA Rattus norvegicus 81 Cysrt1 ENSRNOG00000010600 ENSRNOT00000014080 2 1 1 63 3 2459305 2459324 TAAGAAGACAGACTGCTGCT 59 2458931 2458949 TTGACAACCATCTCATGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282,ENSRNOT00000066823 3 2 2 80 1 224934344 224934364 ATTCCAGAGCCAGAGATACTG 59 224934404 224935785 GTGATAAGAGTGCCATCATCG 59 NA Rattus norvegicus 81 Syn1 ENSRNOG00000010365 ENSRNOT00000014250 1 1 1 80 X 1333188 1334441 GTCAAAGTTGTGAGGTCTCTG 59 1334482 1334501 GTAGTCTCCATTACGTGCCA 60 NA Rattus norvegicus 81 C4bpb ENSRNOG00000004125 ENSRNOT00000005505 2 1 1 80 13 47387960 47387978 CCTACCTGTGAGTCCATCC 59 47387363 47387918 CTCCTGAAAGGCAAGAATAGC 59 NA Rattus norvegicus 81 Rn60_5_0815.7 ENSRNOG00000051118 ENSRNOT00000076023 1 1 1 80 5 77489989 77490354 GCTCTACGGTAGAACAAAGG 58 77489928 77489947 CTAGTGATTACATGCGCCTC 59 NA Rattus norvegicus 81 LOC100911002 ENSRNOG00000050177 ENSRNOT00000071895 1 1 1 80 1 146989344 146989457 TTATCGTGGAAACGCAAGAG 59 146989499 146989518 TTTCTTCAGAGCAGTCATGG 58 NA Rattus norvegicus 81 Sun3 ENSRNOG00000005105 ENSRNOT00000006818 1 1 1 80 14 89220955 89221995 CGGATATGATTCTTCAGCCAG 59 89220895 89220914 GCTTAATCAGGATGTGACCC 59 NA Rattus norvegicus 81 Mir361 ENSRNOG00000035544 ENSRNOT00000053667 2 1 1 61 X 84708958 84708978 AGCTTATCAGAATCTCCAGGG 59 84708917 84708935 AATCAGAATCACACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.25 ENSRNOG00000051326 ENSRNOT00000077037 1 1 1 60 5 77474673 77474693 ATTCATCAGAGATTCCCACAC 58 77474633 77474652 GGCTTTACCACATTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 1 1 1 80 19 37248647 37249752 CCAAGATTACAAGCAGTACCAG 59 37248588 37248608 CACATATGCCTCCAAGAATCG 59 NA Rattus norvegicus 81 Grb2 ENSRNOG00000003990 ENSRNOT00000005347 3 1 1 90 10 104196480 104201859 CCCTGTCAGTCAAGTTTGG 58 104196408 104196427 TTAAACTTCACCACCCACAG 58 NA Rattus norvegicus 81 Tspy26 ENSRNOG00000026770 ENSRNOT00000036956 3 1 1 60 3 148706276 148706296 CCTGATGAATTTGGAGGTGAG 59 148706236 148706255 GAACTTGAACTTGCAACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir672 ENSRNOG00000040357 ENSRNOT00000062110 2 1 1 63 X 74982122 74982141 TTTGAGGTTGGTGTACTGTG 58 74982078 74982096 CTTTCGAAGATGGCGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 1 2 2 80 3 165520822 165522726 ACCTGAAGGTACACTACATGAC 60 165520763 165520782 TGGTATTCTCTATGGCCAGC 59 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 2 2 2 80 10 82390998 82391018 TAGCGTTCTTATCCAAGAACC 58 82390747 82390957 CTTGCTTCTTGATGAACCTG 57 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000046431 ENSRNOT00000071085 2 1 1 80 8 3839942 3860960 GAGATTTCCAATGAGACAGATATGG 60 3839886 3839904 GCAGTGGATCTTGTCTGTG 59 NA Rattus norvegicus 81 Ap3s1 ENSRNOG00000003829 ENSRNOT00000064116 2 1 1 80 18 40732638 40755228 AGCCCTATAGTGAAGATACGC 59 40755268 40755288 TACAAACATTCTCGTCTCGCT 60 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 2 2 2 80 11 67102107 67104169 CAGTGATCGCCAACTTCAG 59 67104211 67104231 AGCAGGTCAAATTTATGCCAG 59 NA Rattus norvegicus 81 Inha ENSRNOG00000020097 ENSRNOT00000027227 1 1 1 120 9 82700773 82700791 GACCTCTGAACCAGAGGAG 59 82702378 82702396 GAAGAGACCTTCCTCAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tomm34 ENSRNOG00000029799 ENSRNOT00000040156 3 1 1 80 3 160459452 160459474 CCTATGTCGACTATAAGACTGTG 58 160455536 160459414 CTCTGGTTATTCTGTTGATGC 57 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 2 1 1 60 13 50744439 50746110 AAAGGATGTACGTCGAATGG 58 50744398 50744416 ATGAGGTTCTGAGGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 1 2 2 81 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935393 166935414 AAATGTCCTTATGTGCTTCCTG 59 NA Rattus norvegicus 81 RGD1304963 ENSRNOG00000008942 ENSRNOT00000011832 2 1 1 73 6 23341380 23341398 CAGCTCAGACTGGGAATCC 60 23345222 23345240 GTTCTTGCTTGGCGTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gnl2 ENSRNOG00000009430 ENSRNOT00000012702 3 1 1 80 5 143051044 143051064 ATGAGAAGATTGCCAAGTACC 58 143051103 143051532 AGTCTTTGGATATTCTGATGGC 58 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433,ENSRNOT00000071977 1 2 2 80 6 42602743 42602762 CAAGCTATGTACAGTGGCAG 59 42592609 42602700 CCTCAGCGATCAATTTGGT 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000076284 1 1 4 80 13 76055844 76166867 TTCGTGCTGGAGATCTCAG 59 76166910 76166929 CAAAGTACCATTCTCCAGCC 59 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623,ENSRNOT00000078227 1 2 2 81 9 14550180 14550562 GAAGGAAGTCGAATCACTTATGTG 60 14550122 14550141 CCTCACTGATACAATGGGCT 60 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623,ENSRNOT00000078227 2 2 2 81 9 14550187 14550565 CCAGAAGGAAGTCGAATCAC 58 14550125 14550145 CACTGATACAATGGGCTAGAG 58 NA Rattus norvegicus 81 Mrps7 ENSRNOG00000003797 ENSRNOT00000005089 2 1 1 80 10 104155884 104156430 GGAACCTTCCAGGGATCAC 60 104156471 104156492 AATGTTCCTTGTCAATCAAGGG 59 NA Rattus norvegicus 81 Ccdc6 ENSRNOG00000024019 ENSRNOT00000032159 3 1 1 80 20 19752249 19752269 ATATCCGGTTCCTAAAGAACG 58 19746408 19752207 CCATCTTCTCCGAATGCTG 58 NA Rattus norvegicus 81 Slc27a6 ENSRNOG00000058193 ENSRNOT00000077443 2 1 1 80 18 53660228 53662711 CACTTTCAGGTGGAAAGGAG 59 53662751 53662772 GCTTCCTGTATAAAGTCCAACC 59 NA Rattus norvegicus 81 Olr1409 ENSRNOG00000047344 ENSRNOT00000046476 2 1 1 60 10 36531580 36531599 CCCTTCATTTACAGCCTGAG 58 36531622 36531640 TGTTGAAGAGCCTTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbf1 ENSRNOG00000008577 ENSRNOT00000011560 2 1 1 80 10 104709811 104711743 CCTCAAAGGCAAAGTTCCTC 59 104708734 104708752 CATCCGAGTCACTGGAGAC 60 NA Rattus norvegicus 81 Vom1r26 ENSRNOG00000032657 ENSRNOT00000048309 2 1 1 60 14 62309472 62309493 TTTCTTTAGAGGAATCCCTCAG 57 62309511 62309532 ATCACCCATGAAATTCTTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb6 ENSRNOG00000010353 ENSRNOT00000035996 2 1 1 98 4 2724663 2724683 AGGCATATGAAGTGTTATCGG 58 2726083 2727197 AATGACTTCCACCTCCTCC 59 NA Rattus norvegicus 81 Esrrg ENSRNOG00000002593 ENSRNOT00000003489 3 1 1 80 13 106617938 106666803 CATATCCCAGGCTTCTCCA 59 106666844 106666865 CAGGATCAAGATTTCCATCCAC 59 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071,ENSRNOT00000017042 2 2 2 80 10 64757310 64757477 GCTAAGAGGTTCCATATCAACC 59 64757516 64757536 CACAACCTTCTCATTGAAACG 58 NA Rattus norvegicus 81 Bcl2l13 ENSRNOG00000012394 ENSRNOT00000016561 1 1 1 80 4 153395977 153395998 TATGTTGTTCTCAGCTACTTGG 58 153396036 153409411 GACATCTAGTTGACTTCCTTGG 59 NA Rattus norvegicus 81 Slc25a31 ENSRNOG00000038398 ENSRNOT00000058476 1 1 1 80 2 127550408 127550426 GTTTGGTGTCTCCGTTCAG 59 127550468 127551378 GGCAATAAGCCCTTAACAGTG 60 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000015125 ENSRNOT00000020493 3 1 1 102 4 157327783 157328047 AAAGAAGAGCGGAGGAACC 60 157328110 157328131 AATGGCAGACTGGATATTTGAC 59 NA Rattus norvegicus 81 Mcidas ENSRNOG00000039588 ENSRNOT00000076278 2 1 1 80 2 44866349 44866828 TCATTGCAGATTCGTCCTC 58 44866872 44866890 AAGACGGAACATCACAAGG 58 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622,ENSRNOT00000012308 1 2 2 80 8 69079558 69079576 TCTGTCTTGGTTGGTTTGC 59 69079620 69084115 CGCTCTTTGTTCCAATGTG 58 NA Rattus norvegicus 81 Vom1r92 ENSRNOG00000057461 ENSRNOT00000087069 3 1 1 60 4 121761540 121761562 CTACTCAAGGATGAAGTTCAAGG 59 121761579 121761600 GGACACAATAATTTGGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360200 ENSRNOG00000025217 ENSRNOT00000038958 2 1 1 154 12 12188261 12188279 CATCAAGTTCGACTTGGCA 59 12188538 12188556 CACTAATGTGGCGGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881,ENSRNOT00000022281 2 2 2 80 9 89076196 89082201 TTGATGTTTCACAGTGCCC 59 89076134 89076153 AGTTGGTACTGTTTGGTCTG 58 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 2 1 1 80 1 8600410 8600429 ATGTTCAGAAACAGTGGAGG 58 8599715 8600369 TAGCTGTCTTACTCCAATCTG 57 NA Rattus norvegicus 81 Rn60_2_1417.1 ENSRNOG00000051125 ENSRNOT00000075973 2 1 1 60 2 122019746 122019764 CCTTCACCTAAACCCACCA 59 122019787 122019806 GATCCTTGGTCACATTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1115 ENSRNOG00000050583 ENSRNOT00000041855 3 1 1 60 8 17775949 17775970 GGTACACAATCATCATGAACCC 60 17775910 17775931 AAGAGTAGGGAGAGTAGAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 3 1 1 82 10 34218918 34221543 CTGGATCAGGGTTTGAGGA 59 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081091,ENSRNOT00000091967 1 2 7 64 20 2515742 2515760 ACACAGAGAAGACCATCGC 60 2515882 2515900 GAGCGTCCTCTTCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07028012.1 ENSRNOG00000053439 ENSRNOT00000081052 3 1 1 80 17 52939805 52939823 ATTCCAACCAGTGGGATGG 60 52939983 52940001 TGTTTCTGAAGCGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076178 1 2 3 60 X 65291054 65291072 AAGATTGAACGGGAGAAGG 57 65291096 65291114 TGGTCTGCTCCTCAATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 1 1 1 152 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565094 105565114 GGTTTGACCCTTCTGACCT 59 NA DesignNoJunction Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002728 1 1 3 80 14 22823304 22823323 GGACTTTCTCACCATGTCCA 60 22823363 22825179 GCATTCTCCTTATAGGAAGGGT 60 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 2 2 2 80 1 166623814 166623834 CTCCTTATGACCTCCTGTGAC 60 166623876 166624260 TTTGTAGATCAGCTCCGCA 59 NA Rattus norvegicus 81 Hjurp ENSRNOG00000022911 ENSRNOT00000051065 3 1 1 80 9 95361815 95361834 TACAACCAACCCTTTGAGGA 59 95359487 95361772 CCAGACTCTCAATCCCTGG 59 NA Rattus norvegicus 81 RGD1309748 ENSRNOG00000002545 ENSRNOT00000003439 1 1 1 80 10 6844087 6858315 CTCTGCATGGTCTTAGTGG 58 6844025 6844044 CACTGCTTACATGTGTAGGA 57 NA Rattus norvegicus 81 Clk4 ENSRNOG00000003714 ENSRNOT00000005048 1 1 1 80 10 36732181 36732199 GAACACCTGGCAATGATGG 59 36732240 36732834 GAAATACTTGCGTTTCCTTGTC 59 NA Rattus norvegicus 81 Polr2i ENSRNOG00000050560 ENSRNOT00000073107 1 1 1 85 1 91042083 91042181 GCCAGGAATGTAATAACATGCT 59 91041805 91041823 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Heg1 ENSRNOG00000001793 ENSRNOT00000002443 2 1 1 80 11 70276274 70276295 ACAATACTCAGGGATCTTTCAC 58 70271529 70276233 AGGTTCTAACCAGACTGCA 58 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 3 2 2 80 3 46513057 46513721 TCAAATTCACTGGAGTAATGGG 59 46512998 46513017 CTCTGGCTATCCATTCTTCC 58 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 2 2 2 80 16 20408217 20408354 GTTGTCAGTGATGAGATCATGTG 60 20408390 20408412 CAGAAGCCTAGTAATGAGATCCT 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805,ENSRNOT00000079607 1 2 2 80 17 56963235 56963254 TTGAGGAGCTACAGAGACAC 59 56962264 56963195 ATAGTGTTGGCATATGTTCCTG 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 1 2 2 80 5 169400328 169406759 GTGCCTCCTATTGTGTATTTACG 60 169406799 169406817 CATGCGTTCTAGCTTCTGG 59 NA Rattus norvegicus 81 Vom1r95 ENSRNOG00000048956 ENSRNOT00000072082 2 1 1 60 4 121821951 121821969 TGTGCAGATTCCTGTAGCC 60 121821909 121821930 ATTATTGAGAACCAGCAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 3 2 2 81 13 41720268 41722196 ATCATCCCATCATGTATTGCC 58 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Rn60_X_0654.1 ENSRNOG00000051187 ENSRNOT00000076870 3 1 1 60 X 64487449 64487471 GGAGAAATTCAGGAACTTCATCG 60 64487411 64487430 ATCTGATTTCACCAAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phpt1 ENSRNOG00000016723 ENSRNOT00000022495 2 1 1 80 3 2797297 2797809 TATGGCTATTCTATGGGTTACG 57 2797238 2797259 CTCATAATCAGGATACTTGGCT 58 NA Rattus norvegicus 81 Nfkb2 ENSRNOG00000019311 ENSRNOT00000026235 3 1 1 80 1 266058873 266058891 CATGGGTCTTCATGAGGGA 59 266058934 266059032 TCTTCTTTCACCTCTGTGCT 59 NA Rattus norvegicus 81 LOC100911988 ENSRNOG00000045903 ENSRNOT00000045739 3 1 1 60 8 18062667 18062686 ATGCTAGTGAACATCCAGAG 57 18062626 18062645 TCTGTGTAAGGCAATCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562011 ENSRNOG00000061525 ENSRNOT00000049057 2 1 1 60 1 216942442 216942461 ATGCTACCCTCATATTGCAG 58 216942401 216942420 GGCAGAGGACAAATGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562011 ENSRNOG00000061525 ENSRNOT00000049057 3 1 1 60 1 216942442 216942462 CATGCTACCCTCATATTGCAG 59 216942402 216942422 GCAGAGGACAAATGAAGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clpp ENSRNOG00000047052 ENSRNOT00000072001 3 1 1 172 9 10051841 10053375 ACATCAATAGCCCAGGTGG 60 10051687 10051705 GATTCTGGAATTGGGCAGC 59 NA Rattus norvegicus 81 Rn60_6_0926.2 ENSRNOG00000051280 ENSRNOT00000072892 2 1 1 60 6 82908696 82908714 GCCACCAGTCGAATTTACC 59 82908738 82908756 AGTTGTGGTCTAGTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500846 ENSRNOG00000031425 ENSRNOT00000049063 3 1 1 80 7 69074079 69074100 ACAATGATATCCACTCCATAGC 58 69070641 69074039 GTTCTGCAGTATTGATCCGT 58 NA Rattus norvegicus 81 Tpbgl ENSRNOG00000017922 ENSRNOT00000024157 3 1 1 61 1 164589623 164589641 GCCTCTTACGTCTTCTTCG 58 164589580 164589599 AGCACCATGAGGAAGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2c ENSRNOG00000020700 ENSRNOT00000028097 2 1 1 81 1 220967082 220967100 GGAAGCTGAACTTCTCAGG 58 220967145 220967238 ATAAAGCGGTCAAAGTCCC 58 NA Rattus norvegicus 81 Apaf1 ENSRNOG00000008022 ENSRNOT00000010869 2 1 1 80 7 31710802 31717457 CTCTGTGATTCAGGTGTGG 58 31710740 31710761 CTGAAGTCCTTTACTGTTTCCT 58 NA Rattus norvegicus 81 Bet1 ENSRNOG00000011008 ENSRNOT00000014810 3 1 1 105 4 29083477 29085097 CTGTTAGCTGAAATGGATTCAC 58 29083393 29083412 ATAGCAATTTCGTTTGGCTC 57 NA Rattus norvegicus 81 Hoxb1 ENSRNOG00000008506 ENSRNOT00000011416 1 1 1 88 10 84214843 84214861 ATCTTGCTCGTCAGAACCC 60 84214912 84215367 ACACCTTTGCTGTCTTAGGT 59 NA Rattus norvegicus 81 Kansl1l ENSRNOG00000028149 ENSRNOT00000067589 2 1 1 80 9 73718262 73720100 GTGAAACAGCATTAGCAGGAG 60 73718202 73718221 AATTGCAGTGAGATCCTGGT 59 NA Rattus norvegicus 81 Prkar1b ENSRNOG00000028733 ENSRNOT00000031896 2 1 1 80 12 17688274 17693747 GCAAAGTCTCCATCTTAGAGTC 59 17693788 17693806 CTTCAAACTGCACAGGCTC 60 NA Rattus norvegicus 81 Olr1145 ENSRNOG00000050124 ENSRNOT00000051572 3 1 1 60 8 19386211 19386229 CTCTCACCTCCACATTCCA 59 19386169 19386189 GCAGATATCAGTGAAGGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000020160,ENSRNOT00000020204,ENSRNOT00000074146 3 4 7 134 17 57082608 57082626 CCTACTACTGCTTTGCCAC 58 57082724 57088177 TTCTTTAGCAGCTTCCCTG 58 NA Rattus norvegicus 81 Icmt ENSRNOG00000010953 ENSRNOT00000014625 2 1 1 84 5 169477781 169477799 CAGTCTGGAGTACACAGTG 57 169477847 169478538 AATCTGCTTCAGTTCTGGC 58 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846,ENSRNOT00000026665 2 2 2 80 1 166762698 166781279 CACAATGAGAGTGTGGTACAG 59 166781319 166781339 CTTGTAGACACTGCTGAAGTC 59 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846,ENSRNOT00000026665 3 2 2 80 1 166740075 166743093 CTAACAAGGATGCAGCTCTG 59 166762622 166762641 CTGCACCTTCTGATAACAGC 59 NA Rattus norvegicus 81 Abi3 ENSRNOG00000005575 ENSRNOT00000007897 2 1 1 80 10 83649414 83649433 GAATGCTGGATCTACAGGGT 59 83647936 83649371 GGTGCATGTTCACCATCTG 59 NA Rattus norvegicus 81 Sectm1a ENSRNOG00000036672 ENSRNOT00000054931 3 1 1 81 10 110266579 110266597 GGATATACTTGTGGCAGCT 57 110265596 110266534 TCCTCATTTGAAGGCTCTG 57 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000065531 1 1 2 81 6 39362126 39362618 GGGATGGGATCTCAGTTCC 59 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA Rattus norvegicus 81 LOC499235 ENSRNOG00000031368 ENSRNOT00000045415 2 1 1 83 1 171997319 171997340 CACCAGAAATATACAGTGACAC 57 171996572 171997276 TTTCTTTATCCCTGTTCCGG 58 NA Rattus norvegicus 81 LOC685157 ENSRNOG00000047079 ENSRNOT00000065873 3 1 1 80 12 20276079 20276099 CTGAACAGAATCTGGCTATGG 59 20275724 20276040 ATCCTAATGAATTCCCAGTGTG 58 NA Rattus norvegicus 81 Kmt2a ENSRNOG00000015133 ENSRNOT00000020573 3 1 1 80 8 49141419 49143081 TCTTTGCTAAAGGGAACTTCTG 59 49141360 49141379 CACACTGCATCATCTTGCTC 60 NA Rattus norvegicus 81 Gcsam ENSRNOG00000022110 ENSRNOT00000043020 2 1 1 95 11 60175541 60177431 GCCTTGCAGATATTTCAAGG 57 60174574 60174593 TGTCGAGCTTTAAATGTGCT 58 NA Rattus norvegicus 81 LOC102556447 ENSRNOG00000036958 ENSRNOT00000055537 2 1 1 80 2 238437010 238437028 GGAGAGGGATTACCTCACG 59 238407378 238436966 AGCCTGTCAATCTGTTTGC 59 NA Rattus norvegicus 81 Fcgrt ENSRNOG00000020583 ENSRNOT00000027944 1 1 1 80 1 101094506 101094737 GGAGAACCAAATAAATGGGAC 57 101094446 101094467 GTGGGCAATGAAGAATTATCAG 58 NA Rattus norvegicus 81 Fcgrt ENSRNOG00000020583 ENSRNOT00000027944 2 1 1 80 1 101094506 101094739 CTGGAGAACCAAATAAATGGGAC 60 101094448 101094469 GGGCAATGAAGAATTATCAGGG 60 NA Rattus norvegicus 81 Csta ENSRNOG00000023953 ENSRNOT00000039075 3 1 1 89 11 67563986 67566792 CTTCATTAAGATGGATGTGGGA 58 67566840 67566860 CCAGTCAGTTTCAAATCACTG 58 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073,ENSRNOT00000018340 3 2 2 80 14 81389594 81394494 TACAATCACATCACAACCAGAG 59 81389535 81389555 CACTTCACTGTAGAGAAGTCC 58 NA Rattus norvegicus 81 Iah1 ENSRNOG00000060853 ENSRNOT00000087180 3 1 1 80 6 43394769 43396059 CTACACTCAAAGATGAGAACCC 59 43396100 43396118 GGTACTGTACCATGTCCCT 58 NA Rattus norvegicus 81 Ctxn1 ENSRNOG00000001057 ENSRNOT00000001399 1 1 1 214 12 2534363 2534384 GAGTCCCAAGAAAGAGAAAGAG 59 2534962 2534980 AACAGAACCAACACCACGA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr247 ENSRNOG00000048525 ENSRNOT00000049260 1 1 1 60 1 172284049 172284071 CAAATCCAACTACTCCATTGACC 60 172284087 172284109 TACTACCACCATGTAGAACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 2 1 1 81 12 2543666 2544172 GTGTCTGCCTCAGGATGAG 60 2543603 2543621 CTGTGTCAACATGTGCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr1165 ENSRNOG00000047835 ENSRNOT00000044463 2 1 1 60 8 20230454 20230474 GCCATTTGTCATCCTCTACAC 59 20230494 20230514 CCAAACATTTACACAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099384.2 ENSRNOG00000056621 ENSRNOT00000080099 1 1 1 174 14 10694137 10694155 ATGTGACTGCTTTGATGGC 59 10686343 10686361 GAGGAACTCCTGTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irf3 ENSRNOG00000043388 ENSRNOT00000027786 3 1 1 80 1 100994868 100994888 GACTTTGTACATCTGGACACC 59 100994927 100995099 TAATTCCAAGAGGTCTTCCTGG 60 NA Rattus norvegicus 81 Deaf1 ENSRNOG00000017960 ENSRNOT00000048817 3 1 1 80 1 214313322 214317084 CCTTTGCAGAAGTGACCAC 59 214313260 214313279 CATTTGCCACTGATGTTGTG 58 NA Rattus norvegicus 81 Adamts18 ENSRNOG00000011575 ENSRNOT00000015874 2 1 1 80 19 46062234 46062616 CAAAGCCAACGAGTATTATCC 57 46062174 46062192 GAAGAAAGCTCCAACTCCT 57 NA Rattus norvegicus 81 RGD1562431 ENSRNOG00000032306 ENSRNOT00000049479 1 1 1 88 9 76441031 76441049 TGTCCCTGCAGAAAGACAG 60 76441124 76441142 GTACCTGGAAGAGGGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nxph3 ENSRNOG00000005185 ENSRNOT00000007133 3 1 1 122 10 83330079 83332682 TCTATCTGGTCATCTGCGG 59 83329975 83329995 ACTTAGGTGAAATGTGACCTC 58 NA Rattus norvegicus 81 Ywhaq ENSRNOG00000051650 ENSRNOT00000077786 3 1 1 81 6 43493114 43493133 CAGCTGATCAAGGACTATCG 58 43471403 43493073 ACTTATCCAACAATTCCAGGAC 59 NA Rattus norvegicus 81 LOC100911909 ENSRNOG00000050809 ENSRNOT00000045673 1 1 1 60 10 62365927 62365945 ATGTACCTCACCACTGTCC 59 62365885 62365903 GGGAATCCAGGTGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 2 1 1 80 10 62304520 62305235 CCACCTAGTGGTAGTGAGC 59 62305273 62305297 AGAAGTAGAGATACCATAGAGAAGC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491,ENSRNOT00000000756 1 2 2 80 20 19381961 19383287 GCAGTTTATGATGCCACGA 59 19381899 19381917 TTAGTGAGCTGCGTAATGG 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 1 1 1 80 4 66308953 66308976 CAGTGATGATAGAGTATGCAAGAG 59 66309013 66322929 CCAAGATCCATTCTTGTTCCA 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 3 1 1 80 4 66331648 66331669 TGTGGAAGAATCTCAGAAAGTC 58 66331709 66339657 TTCCGATAAACTTCCTCTGC 58 NA Rattus norvegicus 81 Rad51c ENSRNOG00000006661 ENSRNOT00000008846 1 1 1 80 10 74698604 74702357 ATTTCAGATCACACCTCAGG 57 74698543 74698564 CGGAAGTTCAAAGAACTTTCTG 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914 3 3 6 148 14 44525064 44525084 TGTAGAGCTGAGTCTTCTTGG 59 44525619 44526411 TCTTGTAACGGAAGCCCAG 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000076173 2 1 6 60 14 44526227 44526247 CTCTACCACTGAGCTAAATCC 58 44526269 44526287 GCTTTGCTTTACCGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1332 ENSRNOG00000058207 ENSRNOT00000080493 3 1 1 89 8 43816101 43816120 CTATGTCTTTGCCTTGCTGG 59 43803762 43816050 CCCAGGAAGAAGTACATGGG 60 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 1 1 1 87 1 221538210 221540485 AGACCTCGAGGAGTCTCAG 60 221540536 221540554 CTTACTGGTGTGCTTCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v1b1 ENSRNOG00000013573 ENSRNOT00000018303 1 1 1 80 4 115432993 115433162 TGCCTAATGACGATATTACCCA 59 115433200 115433221 GCTGTCTGTCCACATAAATCTG 60 NA Rattus norvegicus 81 AABR07001512.1 ENSRNOG00000017412 ENSRNOT00000023387 2 1 1 80 1 48565512 48565550 AAGAGAAACGTTAGCAGATGG 59 48565452 48565471 GTCTTCACAAGGGCTTTCTC 59 NA Rattus norvegicus 81 Phox2a ENSRNOG00000019706 ENSRNOT00000026702 3 1 1 139 1 166894022 166894040 AGGCTTCCAATACAGTCCC 59 166894142 166896218 AGAACTTGTAGGGAACTGCC 60 NA Rattus norvegicus 81 Tas2r110 ENSRNOG00000050637 ENSRNOT00000040860 3 1 1 60 4 167130862 167130882 GACTGGATCAAGAGAAGAAGG 58 167130822 167130840 TAAGGGCCAAGGTAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 1 1 2 69 10 43633056 43637224 CCACAAATGATACGGAAGGT 58 43637256 43637274 TAAACAATGGCGGCTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm41 ENSRNOG00000057622 ENSRNOT00000086785 2 1 1 80 X 111321710 111321728 GAAACAGAAGGTGAGAGGC 58 111320862 111321669 AGAGACACATTCTTCAATGGAG 58 NA Rattus norvegicus 81 AABR07058745.1 ENSRNOG00000050884 ENSRNOT00000071423 3 1 1 80 7 136070265 136070283 CAATGACTCCTGCTGTGAG 58 136070656 136073276 GATGAACCAACCGAATAATCAG 58 NA Rattus norvegicus 81 RGD1566307 ENSRNOG00000046683 ENSRNOT00000074352 2 1 1 80 1 73612422 73612442 CCTACTGTTCTTTGTCCTCAC 58 73612052 73612382 TTTGTCTGTACTCCTTTCCTG 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 1 2 2 80 X 82896316 82932975 AAAGAGCACTACAGGACCG 59 82896254 82896273 TGGTCATACCATTGTCCCAG 60 NA Rattus norvegicus 81 Tas2r116 ENSRNOG00000021366 ENSRNOT00000028970 3 1 1 60 4 167144176 167144194 CAGGCACAAGGATGAACAC 59 167144134 167144155 AGATGATCCACATGAATGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp42 ENSRNOG00000001059 ENSRNOT00000001404 3 1 1 80 12 12871209 12871331 GTCTTCCTGGAAAGGTGAC 58 12871374 12871393 GGTTGGTAAGCTTGAAAGTC 57 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 3 2 2 80 18 58415750 58418512 CACTGCAGATCTTACTTGGAC 59 58415690 58415710 AATGAAGATGATGGTGAGGAC 58 NA Rattus norvegicus 81 Kpna2 ENSRNOG00000015329 ENSRNOT00000020795 3 1 1 80 10 95209569 95209587 GGAATGTCAGCTCATTCCC 58 95205795 95209528 CAGACCAATTTACAGTACCCTG 59 NA Rattus norvegicus 81 RGD1564162 ENSRNOG00000028386 ENSRNOT00000032257 2 1 1 80 20 13662878 13663262 TGTGATGTTTGGAGCTGGT 60 13663304 13663324 TTCCGTTTCAGATGCATAGTG 59 NA Rattus norvegicus 81 Synpo2 ENSRNOG00000014867 ENSRNOT00000019931 2 1 1 80 2 227302429 227411708 TGGCAAAGATTCGAAGTCAG 59 227302368 227302387 GGTTACCATTGATGGACACC 59 NA Rattus norvegicus 81 Slc26a11 ENSRNOG00000030537 ENSRNOT00000054987 1 1 1 80 10 108494804 108494824 AGTGACCACAGACAATAAGAC 58 108494962 108495044 CTAAGAGGAACAAAGAGATATCCTG 59 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 1 1 2 80 12 11247502 11247522 AGACGACTAAGAAGGTGACAC 60 11247559 11249140 GCTTCTCTATTTCTTCTCGTTCTC 59 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310,ENSRNOT00000076383 2 2 2 60 12 11247467 11247487 GCTCATTGACATTGAGAACCC 60 11247506 11247527 CAGTTGTGTCACCTTCTTAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem87a ENSRNOG00000008455 ENSRNOT00000067836 3 1 1 80 3 112135680 112138884 GCAAATAACCAGAGATTTGCC 58 112135620 112135639 TTCCTTCAACATTGGTTCCT 57 NA Rattus norvegicus 81 Mir6326 ENSRNOG00000046282 ENSRNOT00000072421 3 1 1 60 10 62299382 62299400 CCAAGAGTTGCTAGTGCCT 60 62299423 62299442 GGCTCCTAAATGCACTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 2 2 2 88 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322891 214322909 ATCAGGAGTGTGGCTAGGA 60 NA Rattus norvegicus 81 Larp1 ENSRNOG00000031544 ENSRNOT00000036959 1 1 1 80 10 43481718 43481737 CTTCCCATCACCCTTATTGC 59 43481778 43485301 CTTAAGAGCCGCAAAGATGAG 60 NA Rattus norvegicus 81 Dpep2 ENSRNOG00000023303 ENSRNOT00000034722 3 1 1 80 19 37967150 37967168 TGGTGACCTTTGCTGTAGG 60 37965420 37967109 TGATGTGATCAAAGTGATCTGC 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 2 2 3 82 7 143068231 143068986 AGACCAAGTTCGAGACACTC 60 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 3 1 1 91 1 101406342 101406363 GACTACCTGTATCCTACACAGG 59 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 Zfp655 ENSRNOG00000060129 ENSRNOT00000084637 2 1 1 82 12 11132220 11142935 CACTGATGGATTTCCAATTTCC 58 11132159 11132180 TCTGAGTTTCCAGATCAAAGAC 58 NA Rattus norvegicus 81 Pcyt1b ENSRNOG00000012358 ENSRNOT00000016669 3 1 1 84 X 62797194 62797212 CTTTGTGGCTCACGATGAC 59 62797260 62802826 AACAAACATGCCTGCTTCC 59 NA Rattus norvegicus 81 Unk ENSRNOG00000006600 ENSRNOT00000009733 2 1 1 80 10 104601971 104601989 ATGCCTGTCCCTACTACCA 60 104602032 104602564 TTGGACATGGAGATGACCTG 60 NA Rattus norvegicus 81 RGD1562319 ENSRNOG00000039216 ENSRNOT00000060025 2 1 1 82 12 19563226 19565616 ACATGAGTAACATGGCCCT 59 19565662 19565680 TTGGTGGTAGAAGCCAGAG 59 NA Rattus norvegicus 81 Ssna1 ENSRNOG00000011093 ENSRNOT00000014993 1 1 1 96 3 2489577 2489958 ACCTCAAGATCCTGGAGAG 58 2489499 2489518 CTACTCTTCTGGTCTGAAGC 58 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663,ENSRNOT00000086030 1 2 2 80 20 28775068 28775086 TACTTCATTGCTCCGACAG 57 28772660 28775025 AATGTTCACCTTGTTGTCCA 58 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 3 2 2 80 16 20800554 20800572 AGATGGAGCAGACGTACTG 59 20799309 20800510 AGGACTTGACAGCCTTGAG 59 NA Rattus norvegicus 81 Slc16a12 ENSRNOG00000021916 ENSRNOT00000030024 1 1 1 80 1 252982596 252982614 TTCCTCATGTCCATCCTCG 59 252980430 252982553 CTTCAGACACCTTCTGTCAG 58 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528,ENSRNOT00000081787 2 2 3 80 3 8635073 8635309 TCAACCATCCACAAGTGTC 58 8635352 8635371 CTGTCACTTCAACTCTGGTC 58 NA Rattus norvegicus 81 Mri1 ENSRNOG00000026211 ENSRNOT00000003762 3 1 1 110 19 25365120 25365138 CCATCTCCTAGAGCAGACC 59 25363034 25365046 CGGATCACACCTAATGCTG 58 NA Rattus norvegicus 81 Zfp385d ENSRNOG00000014661 ENSRNOT00000038449 3 1 1 82 15 6233105 6233123 GAAGAGGCTGCTTTACTGC 59 6203762 6233061 GCTTAGTACCACTGTTGTGAG 59 NA Rattus norvegicus 81 Rn60_X_0641.1 ENSRNOG00000022607 ENSRNOT00000039583 3 1 1 60 X 64095024 64095043 GAAACCCAGTTCGGATTCTC 59 64094983 64095004 GATCTGTCTCTTTCTGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr137 ENSRNOG00000021145 ENSRNOT00000028707 2 1 1 80 1 222195345 222195483 ATCTGACCAGGCAGATCTG 59 222195283 222195301 AATTCCCACACGAAGAGGA 59 NA Rattus norvegicus 81 Dusp10 ENSRNOG00000004003 ENSRNOT00000005400 1 1 1 88 13 104315435 104315453 AACTACAAGAGGCTGCCAG 60 104315503 104320100 TGAGCTTCCTCAATGAATTCG 59 NA Rattus norvegicus 81 Zpbp ENSRNOG00000027801 ENSRNOT00000039182 2 1 1 89 14 91491359 91491378 TAAGTCTGAATGCCATCGTG 58 91469015 91491310 TCAGTGTCTATAGATGCAACTG 58 NA Rattus norvegicus 81 Pggt1b ENSRNOG00000003541 ENSRNOT00000004723 1 1 1 80 18 40176550 40181190 CAGACAGTCATCCAGATGCT 60 40176489 40176511 CTTTACAAATTCCACTCTCCTCC 59 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000073875 2 1 2 80 2 241504482 241504500 GGGAGATCTCAACAGAGCA 59 241473835 241504439 GGTAGTCTTCAGGACCTTGG 60 NA Rattus norvegicus 81 Mmp1b ENSRNOG00000008881 ENSRNOT00000011884 3 1 1 80 8 5630641 5630661 ACCACTAACATTCGAAAGGGT 60 5630377 5630600 TAAAGGTCACCATGGTCTCC 59 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000064562 3 1 2 83 9 71777991 71778009 CTACCCTGACTACCAGCAG 59 71764640 71777945 ATTCTGTGAGAGCTGGAGTG 60 NA Rattus norvegicus 81 Olr769 ENSRNOG00000050221 ENSRNOT00000073423 1 1 1 60 3 102826013 102826032 GGTAATGGCTTATGATCGCT 58 102825972 102825993 CATGATGGTGAAATAGTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr769 ENSRNOG00000050221 ENSRNOT00000073423 3 1 1 60 3 102826052 102826072 TTTCCCATTGCATTGTTGGAG 60 102826012 102826032 TAGCGATCATAAGCCATTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reep3 ENSRNOG00000000645 ENSRNOT00000067920 2 1 1 81 20 22946445 22946464 GTGTTCGGAATGCTCTATCC 59 22946508 22969279 TCATCCAGCGGACATACTC 59 NA Rattus norvegicus 81 Olr778 ENSRNOG00000004993 ENSRNOT00000006622 3 1 1 60 3 103111132 103111155 TCATCATCTCCTATGTCTTTCTCC 60 103111095 103111114 GATGAACATCCTGAGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncr2 ENSRNOG00000042230 ENSRNOT00000065673 1 1 1 80 9 14649300 14649318 GTTAGCGCTTGGACTTGTC 59 14648092 14649258 CATTTATTCCCGACGTTCTGG 60 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000055051 ENSRNOT00000083649 1 1 1 60 4 1641087 1641107 TTATGTACCTAAAGCCCTCCT 58 1641128 1641147 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1b ENSRNOG00000011552 ENSRNOT00000065508 2 1 1 132 19 45942586 45942938 TTTACCAGTCCTGAGCTAGAG 59 45943032 45943050 CAGCCACGTGGTAAATGAG 59 NA Rattus norvegicus 81 Zfpm2 ENSRNOG00000004109 ENSRNOT00000029419 2 1 1 81 7 79638108 79638127 GACAGCCATTCAGACAAACC 60 79638166 79738248 TCTGAAATACTTCTAGCTCTCCTG 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522,ENSRNOT00000010421 3 2 2 80 5 39637495 39637515 TTGTCCCTGACATCTATTCCA 59 39636242 39637455 CGTCAAATTCTAGATAGCCGT 58 NA Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 3 1 1 80 3 8993010 8993033 CTTTATCCTAACCCTGAATGAAGG 59 8993072 8997661 AGCTTCTCAATGGCCTCAG 60 NA Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513 3 1 2 84 13 78889518 78889536 GCCAGGAGACAGAGTTCAG 60 78889582 78892492 GAGGATCGATATCTTCCTGCA 59 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455,ENSRNOT00000064332 1 2 2 80 1 78717587 78721058 TCTCCTGGATTATGTGGTACG 59 78721100 78721118 GGCGGATGTCTTTCATCTC 58 NA Rattus norvegicus 81 LOC100910164 ENSRNOG00000011225 ENSRNOT00000014916 1 1 1 80 18 38852923 38853268 TTTCACCAGTTCTACTGTTACC 58 38853306 38853327 GAAGTACATAATGCTTTCTGGC 58 NA Rattus norvegicus 81 Exd1 ENSRNOG00000025360 ENSRNOT00000038365 3 1 1 82 3 111336476 111338024 TCTGTTGGCTTCAGGTAGC 60 111336412 111336430 TCCATTGTTGAAAGCACGG 59 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000083176,ENSRNOT00000044145 2 2 2 80 1 88189585 88189699 CTACCTTCACCAGGACTGG 59 88189742 88189761 AGGTCTGGAGCATTGATGTC 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000083176,ENSRNOT00000044145 3 2 2 81 1 88189336 88189354 CCTATGTCCAACATGGCGA 60 88189395 88189502 AGCGGTCGATATTCTTATCTACC 60 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000091510 1 1 2 60 6 8887108 8887129 CTCCCACTTCTTGTTGACCT 60 8887152 8887170 GCTACTCGCCAGAAGTAGG 60 NA DesignRelaxed Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000089174 1 1 2 173 6 8887152 8887170 CCTACTTCTGGCGAGTAGC 60 8887309 8887327 ACATGGACAACTCTTCCGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911730 ENSRNOG00000046094 ENSRNOT00000072434 2 1 1 80 1 214448824 214448842 GTTGTCATGGTGACTGGAG 58 214448886 214449193 CAGGATGAAGTACAAGCGT 58 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855,ENSRNOT00000091493 2 2 2 80 3 123622081 123622455 TGCTAAGGCTACTGTCGTG 60 123622019 123622039 GTCACGTTACAAGTTAGGCTG 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 3 1 1 92 10 45528763 45534526 ATTTCCAGCCTGGAGAAGG 59 45528689 45528707 TGATTGTGGATCTCCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr150 ENSRNOG00000017143 ENSRNOT00000023007 3 1 1 60 1 169386525 169386544 TACCACTATTCTCACACCCA 58 169386484 169386503 ACTTCGGAAAGAGATTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1 ENSRNOG00000010311 ENSRNOT00000038596 2 1 1 80 15 104147860 104147879 ATCATCACTCAGAAGCAGCA 60 104145939 104147382 TAAAGGAGTCCCTTTCATCTCG 60 NA Rattus norvegicus 81 Fuca1 ENSRNOG00000009325 ENSRNOT00000012455 1 1 1 80 5 154277347 154277365 AGTGTCCCGATTCGTACTG 59 154277408 154280423 CTACCACCTGATCCTTGACC 60 NA Rattus norvegicus 81 Inpp5b ENSRNOG00000048506 ENSRNOT00000067762 2 1 1 80 5 142777361 142777381 TTGTTCTCGAATGCAGTTCTC 59 142777423 142778604 AGCCACAAGATCACATCGT 59 NA Rattus norvegicus 81 St6galnac1 ENSRNOG00000000251 ENSRNOT00000042321 3 1 1 80 10 105714241 105714408 TCTCTGTGACAAGGTGAGC 59 105714179 105714203 CACGATGTATCATAGTAGTGATCAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 1 5 8 82 20 1983427 1984092 GGTTGCCAGATTATACATCCG 59 1983365 1983383 AAGTTGATGGCCTTCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 3 1 1 146 X 105419330 105421353 GCCACATTGAAATTGCATTGAG 60 105421460 105421478 AAAGAAGCGCATCACTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 1 1 1 60 5 135997501 135997522 GTGTGAACAGATACACATTCGT 59 135997543 135997561 GCACACCAGTTTGTAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup210l ENSRNOG00000055790 ENSRNOT00000087063 3 1 1 80 2 189562894 189567161 GAGCCTAGAGGTCTTCCAC 59 189567204 189567223 AGAGTTACGCTTGTTGTGAG 58 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866,ENSRNOT00000080774 3 2 2 106 12 16098096 16098434 CTACGACTGGTACAGGTGG 59 16098504 16098522 CCAAGATACCCTTGGAGCT 59 NA Rattus norvegicus 81 RGD1561958 ENSRNOG00000022411 ENSRNOT00000035274 1 1 1 80 X 83926648 83930521 ATTGCTCACAACCCAACTG 59 83930564 83930583 TAGACTTTGGGCAGAAACCT 59 NA Rattus norvegicus 81 LOC102552166 ENSRNOG00000049489 ENSRNOT00000074641 2 1 1 80 8 114193005 114193237 TTACATATGAATGGGCCAAGG 58 114192945 114192965 AAAGAAGTACCATCTTGGGAG 57 NA Rattus norvegicus 81 Lypd5 ENSRNOG00000019432 ENSRNOT00000026288 2 1 1 109 1 81212611 81212629 GGACTCACCCTGAAGACTG 59 81212702 81213082 CGAGAAGTTGCCAATGGTC 59 NA Rattus norvegicus 81 Traf2 ENSRNOG00000006238 ENSRNOT00000008253 1 1 1 80 3 2754358 2754376 CTACACTACGAGGTCTGCC 59 2753651 2754315 GTCCTGAAGCTTCTCCTGAG 60 NA Rattus norvegicus 81 Spink10 ENSRNOG00000043250 ENSRNOT00000039466 2 1 1 96 18 57971020 57971849 TTTGTACTCCGAAACTGCC 58 57973341 57973360 CTCTTTGGTACACTTGTCGA 58 NA Rattus norvegicus 81 Tas2r123 ENSRNOG00000046088 ENSRNOT00000047402 3 1 1 60 4 167154476 167154496 CTAAGGTCTTCTTAATCGCCA 58 167154436 167154455 ATGAAGAGTGAGTTGATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd3 ENSRNOG00000015685 ENSRNOT00000021208 3 1 1 82 7 117765324 117765412 CACAGTCATGAGAGGAGCA 59 117765457 117765476 CAGTGAATGTGGCAGTAGTG 59 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 2 2 2 80 X 116758230 116758248 CCGCATCCAGAAAGAAGAG 58 116757425 116758187 TGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Rint1 ENSRNOG00000022182 ENSRNOT00000035034 1 1 1 80 4 7874116 7874134 AGCGACATCTCACTTACCT 58 7870660 7872010 ACCTGAATCTCTTAAAGACCTG 58 NA Rattus norvegicus 81 Xxylt1 ENSRNOG00000001729 ENSRNOT00000002356 3 1 1 80 11 73227620 73227638 GCTCAGGGACCTACTACAG 59 73227682 73270511 TCCTCAGGATCTCTTTGGG 58 NA Rattus norvegicus 81 Mycbp2 ENSRNOG00000010479 ENSRNOT00000014583 1 1 1 80 15 93717348 93719449 ACATTAGCTAGGCACCACC 60 93717286 93717307 ACGCAGATATCTCATTTCATCC 59 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000080010 2 1 3 60 7 143316998 143317016 GAACCTGCAAATCGATCCC 59 143316956 143316974 CTTGATCTGCTCCCTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000077012 3 1 3 84 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068773 65071786 GTGGCATAAACCTGTAATCG 57 NA Rattus norvegicus 81 Uts2 ENSRNOG00000018393 ENSRNOT00000024798 3 1 1 81 5 168082344 168083906 AAGCTTGAGGAAGGCTCTC 59 168083948 168083969 CTTACGTTGTTTCCTGGTTCTC 60 NA Rattus norvegicus 81 Rasgrp4 ENSRNOG00000033744 ENSRNOT00000048677 2 1 1 80 1 88089027 88089167 CAGCTAGTGGAGAAGTCCG 60 88089210 88089229 CAGCTTCTCAAAGTCCTCCA 60 NA Rattus norvegicus 81 Rn60_13_0837.3 ENSRNOG00000061854 ENSRNOT00000088806 3 1 1 60 13 78725337 78725356 GCCTTCAACTAAGAGACCAG 58 78725378 78725397 CTGAGCAAGCACTCTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_12_0174.2 ENSRNOG00000026725 ENSRNOT00000029631 3 1 1 60 12 15206746 15206767 ATGGAAAGTTTCTCATCAACGG 59 15206788 15206806 TTAGCGGGATCTCATTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd21 ENSRNOG00000024793 ENSRNOT00000035743 1 1 1 87 1 162320890 162322289 ATCTGGGCAAACTGTTTCC 58 162322340 162322358 GAGGTTGTGTAGAGCTTGC 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899,ENSRNOT00000073798 2 2 2 80 1 99447882 99447901 CAACTGGAAACAGTGGTGAC 59 99447944 99449095 CAGCAGAGGACCATCTGTC 60 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 2 2 4 98 14 85876552 85879202 GAAAGTTCTCAGCTGTCGG 59 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 3 2 4 98 14 85876553 85879203 AAAGTTCTCAGCTGTCGGA 59 85879265 85879283 TCTCAGACAGGAGACAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 1 2 2 80 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505868 80505887 GGATGTGGTCTAGATGTGCA 60 NA Rattus norvegicus 81 Olr1459 ENSRNOG00000050291 ENSRNOT00000052329 2 1 1 60 10 44789924 44789945 TTCTACTTGTTCCTCTCACCTG 60 44789966 44789984 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galk1 ENSRNOG00000006359 ENSRNOT00000008525 2 1 1 80 10 104560744 104560848 TCCCTCAGAGATGACTATGAG 58 104560684 104560702 GTAAACTCCAGGCACAGAG 58 NA Rattus norvegicus 81 Rgs19 ENSRNOG00000016547 ENSRNOT00000022451 2 1 1 107 3 177197530 177197638 CTGTGAAGTCTGCACTCCA 60 177197441 177197459 AGGAATGCCCGGAATACAC 60 NA Rattus norvegicus 81 AABR07058199.1 ENSRNOG00000054576 ENSRNOT00000084764 1 1 1 80 7 104475938 104476430 ACCTGATAAACATGCTGGAG 58 104475877 104475897 TCTTTCTCAGCTCATCTAGGA 58 NA Rattus norvegicus 81 LOC100912415 ENSRNOG00000048360 ENSRNOT00000071677 1 1 1 60 4 1752327 1752347 TTCATTGACCTCTGTTACTCC 58 1752287 1752305 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rraga ENSRNOG00000007051 ENSRNOT00000009225 1 1 1 60 5 104941930 104941948 GGTGATTTCCCACTACCAG 58 104941972 104941990 GCTGATCTTCTCAAAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 3 3 3 80 1 149151523 149151543 GTGCAACAAGAAGATACATGG 58 149150751 149151483 TTTCAGGAAAGAGACCATCTG 58 NA Rattus norvegicus 81 Cd72 ENSRNOG00000017485 ENSRNOT00000060442 2 1 1 80 5 58945001 58945578 GTATTCCCTACAAGATTCTCTGC 59 58944943 58944966 CTCATCTGCTCAATCCAATATGAC 60 NA Rattus norvegicus 81 Cdx2 ENSRNOG00000032759 ENSRNOT00000048188 2 1 1 81 12 9469716 9469931 TGTTTGGAGCTGAGGAGAG 59 9469976 9469994 ATCTTGGCTCAAGTGTTGC 59 NA InUTR Rattus norvegicus 81 Glb1l ENSRNOG00000019243 ENSRNOT00000026081 3 1 1 80 9 82402550 82402568 TCCCTTGGGACCTTTACCT 60 82402372 82402507 GACAGCAAATTCCCATCCAG 59 NA Rattus norvegicus 81 Cep68 ENSRNOG00000027282 ENSRNOT00000039523 2 1 1 83 14 104514881 104516167 TATGGGAAGCCAAATGGAG 57 104514816 104514835 ACGGTTATAGTTCCAAGGAC 57 NA Rattus norvegicus 81 Npas1 ENSRNOG00000015376 ENSRNOT00000020855 1 1 1 80 1 78425754 78426148 CTTGTGAGAGCAGAGTGAG 58 78425692 78425710 CGTGGACAAACTGATAGCA 58 NA Rattus norvegicus 81 Acd ENSRNOG00000038973 ENSRNOT00000059577 2 1 1 80 19 37666837 37666965 CTCAATAAATGCCTTGAGGAC 57 37666644 37666662 CTCATCCAGAAGCTGAGAC 57 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000052968 ENSRNOT00000078872 3 1 1 80 3 62485800 62485818 CAAGGTGGTGGATATGGTG 58 62485862 62486975 ACCATAGTTACCTCCACCA 57 NA Rattus norvegicus 81 Syndig1l ENSRNOG00000027645 ENSRNOT00000031650 3 1 1 91 6 108395969 108395989 CATCCATACTGTGTCCTATGG 58 108394650 108394668 CACTCTCAGTCGAGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Lrrd1 ENSRNOG00000026196 ENSRNOT00000032529 3 1 1 83 4 27404950 27405545 CCTGTAAAGACCACTACTCCA 59 27404887 27404909 TGTGAATGATACCCTCTTCTCTG 60 NA Rattus norvegicus 81 Krba1 ENSRNOG00000007405 ENSRNOT00000043856 3 1 1 80 4 78042439 78042457 CTTCAGCAGCTCTGATGGA 60 78042501 78042609 GGAAGGTGGTCTTTCTGCT 60 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000016468 1 2 3 82 14 85967793 85967811 TTCAGACCTGGGAGAAGTG 59 85965401 85967748 CTCTCCATTCCAAATCTGCA 58 NA Rattus norvegicus 81 LOC679823 ENSRNOG00000028883 ENSRNOT00000052265 2 1 1 60 10 10876195 10876213 CAATCCCACTTCTGCAGTC 59 10876236 10876255 GTCCTTCAGTTCCTTCAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hinfp ENSRNOG00000009499 ENSRNOT00000012868 3 1 1 80 8 48631355 48631627 CATTGCGAGAGTGTCTTCG 59 48631293 48631311 AGCTTGGTATTCACAGCAC 58 NA Rattus norvegicus 81 Trim32 ENSRNOG00000010303 ENSRNOT00000013675 2 1 1 119 5 81431655 81439361 AGCAGGAATTTGACACTGG 58 81439444 81439462 ATCCAGGTTCAGGTGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mrpl28 ENSRNOG00000042720 ENSRNOT00000027662 1 1 1 80 10 15495959 15496714 CAACAACGACAAGCTCTCC 59 15496755 15496776 AAGATTTCACTGTAAAGCTCCC 59 NA Rattus norvegicus 81 Cwc25 ENSRNOG00000004091 ENSRNOT00000005426 1 1 1 80 10 85691757 85692224 TGGATATGGCTTACAGGTGAG 59 85691697 85691718 TTCTTTACTGCCCTTTGTTCAC 60 NA Rattus norvegicus 81 Erich4 ENSRNOG00000037798 ENSRNOT00000031326 2 1 1 103 1 82409463 82409481 AGGCCCTTATGTCTTCAGG 59 82408574 82408592 CAACAGCTGAACATCCACG 60 NA DesignNoJunction Rattus norvegicus 81 Pbld1 ENSRNOG00000000386 ENSRNOT00000000434 2 1 1 80 20 27111469 27111488 GGATTGTCCTGGACTTTCCT 60 27106797 27111311 CTATGGCTGCCTTTATCAAGTC 59 NA Rattus norvegicus 81 AABR07053379.1 ENSRNOG00000047116 ENSRNOT00000073004 1 1 1 60 3 103597487 103597508 CACTCAGATGTTCTTCATTCAC 58 103597528 103597547 CATGACTATGAGCAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd52 ENSRNOG00000015403 ENSRNOT00000020688 1 1 1 186 5 152323317 152324362 TGGTCCAGATACAAACAGGAG 60 152323151 152323169 ACATCGGTGATGGATGAGG 59 NA Rattus norvegicus 81 Ei24 ENSRNOG00000030391 ENSRNOT00000046590 3 1 1 80 8 39257200 39257476 CCTCCTACATTATCAGTGGCT 59 39257140 39257160 CAGGAGTCTTTGCTTCATTGG 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 1 2 2 83 10 67476597 67477097 TGGAAGAGATTTCTTCAGTCG 58 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Fam89b ENSRNOG00000024239 ENSRNOT00000016987 2 1 1 83 1 221086668 221087051 CAAGGAAATGGTGGGTCTG 59 221086603 221086622 TTGTAGTCCTGGATCGACTC 59 NA Rattus norvegicus 81 Sec11c ENSRNOG00000017036 ENSRNOT00000022958 2 1 1 80 18 61498495 61498514 TTCTGCGCTCATGATATGGA 59 61498556 61501572 ATACTGCCACTCAGTACCAC 59 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 2 2 2 80 7 35532160 35535148 AGGTACAGGTATGAGCGAC 59 35535192 35535210 CTGCTTCAGGTTAGCTGTC 58 NA Rattus norvegicus 81 LOC100909752 ENSRNOG00000060381 ENSRNOT00000088385 1 1 1 80 5 62936318 62938751 GGATCCAGAAACTTGGTCAC 59 62938793 62938812 GAACGTCCCTTCTATGACCA 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920,ENSRNOT00000041365 1 2 4 80 12 5733706 5748256 AGTTCGACCAGGTCATCAG 59 5733644 5733662 ACCAGTCAAACAGTGTTCG 58 NA Rattus norvegicus 81 RGD1305733 ENSRNOG00000003198 ENSRNOT00000004346 3 1 1 80 10 3471116 3541687 AGAACTCAGGTTCATGATGGA 59 3541728 3541747 GCTACCAAGTTCTGAAGCTC 59 NA Rattus norvegicus 81 Rps14 ENSRNOG00000018774 ENSRNOT00000059501 3 1 1 82 18 56044506 56045236 TCTTTCTGGCAAGGAAACCA 60 56045281 56045299 CTGCATACGGAGAGGACTC 59 NA Rattus norvegicus 81 Cep78 ENSRNOG00000014041 ENSRNOT00000018951 2 1 1 80 1 233198739 233198758 GAACGTGCAAGAAGAAACAG 58 233197261 233198364 AGGGAAATCTGATTGCTGC 58 NA Rattus norvegicus 81 Xkr6 ENSRNOG00000011634 ENSRNOT00000015540 3 1 1 85 15 46946358 47143230 GTGTGGAGGTATATCCGCA 59 47143278 47143297 ATCATAGCCCAGTAGAAGCG 60 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 1 1 1 80 2 243170085 243170105 GGTTCAATTCAATCGTTTGCC 59 243170144 243172275 TCTAGGCTGACAATTAGTCCTG 59 NA Rattus norvegicus 81 Sepn1 ENSRNOG00000017078 ENSRNOT00000022921 3 1 1 81 5 152755126 152755145 CGGCCATATCATCTTATCCA 57 152753551 152755082 CACATTCAGAGACCTGTGG 58 NA Rattus norvegicus 81 Itga6 ENSRNOG00000001518 ENSRNOT00000002075 1 1 1 80 3 58479606 58479626 GCGGCTACTTTCACTAAAGAC 59 58479667 58481950 TACACGAACGATCCCTTTCC 60 NA Rattus norvegicus 81 Atad3a ENSRNOG00000018118 ENSRNOT00000045053 1 1 1 80 5 173205866 173205884 GAGGCACTGAATCTTGCAC 59 173204746 173205824 GGCAGCTTCATATTCCTTGAG 59 NA Rattus norvegicus 81 Prdm12 ENSRNOG00000009218 ENSRNOT00000012234 1 1 1 83 3 10193010 10194384 TGTGGGAGGTATTCAACGAG 60 10192946 10192964 TGTAGGTCATCCAGCTTCG 59 NA Rattus norvegicus 81 Rn60_13_0836.1 ENSRNOG00000051271 ENSRNOT00000076141 1 1 1 80 13 78619990 78620205 CTGTCTGAGAACTCATTTGGTG 59 78620246 78620264 CTCCAGGAAATGCTTCCCA 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000014863 1 1 2 80 10 85287176 85287196 CAAGGAGAGGTCCACTGAG 59 85287114 85287134 CTTGAAGCCTTGAGATGTCAG 59 NA Rattus norvegicus 81 Actn2 ENSRNOG00000017833 ENSRNOT00000024098 1 1 1 80 17 66344225 66397340 AGAGGAAGACTTTCACTGC 57 66344163 66344184 TGAAATCCTCCTCTATGTTCTC 57 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 2 2 2 80 5 135413326 135415566 TCAGCTAAGTCATCTACAGCC 59 135415605 135415626 ACGGCTTATTCCAAATCTACCT 60 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 3 1 1 80 11 70037693 70037713 AGCAACAGTTATCTGTTCAGC 59 70037753 70039396 AGGCGCTTAGTACCATAATCC 60 NA Rattus norvegicus 81 RT1-P2-ps1 ENSRNOG00000053315 ENSRNOT00000078926 3 1 1 60 20 2542934 2542953 ACATCGCCATAAACGAAGAC 59 2542893 2542912 TCTATCTGTGCTGCAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 1 2 2 80 15 18543723 18544075 CGTGATGATAATCCAGTGGTG 59 18544117 18544135 TGATTGAGCTTCTGTGGGA 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978,ENSRNOT00000013333 3 3 3 85 15 60732497 60733220 ATCAGACAGTGATGGACCG 59 60728663 60728682 TCAGCAGAGTCTTTCCACTC 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492,ENSRNOT00000017885 1 2 2 80 1 193132789 193132808 ACCTCTCAGTTCATCTCAGC 59 193132850 193133490 AGCAATGAAACTGGAACCTG 59 NA Rattus norvegicus 81 Tas2r106 ENSRNOG00000031185 ENSRNOT00000044029 1 1 1 60 4 165787440 165787459 TTCTCCACATATGGTTGCCT 59 165787399 165787422 GATTATCCACAGGTAAGAAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtp1 ENSRNOG00000021992 ENSRNOT00000032383 1 1 1 80 11 80826220 80826238 CTGGAACTTCATGCCTCAG 58 80824466 80824485 GAAGAGGATAACTACGTGGG 57 NA DesignNoJunction Rattus norvegicus 81 Rtp1 ENSRNOG00000021992 ENSRNOT00000032383 2 1 1 80 11 80826219 80826237 TGGAACTTCATGCCTCAGG 60 80824465 80824485 GGAAGAGGATAACTACGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r84 ENSRNOG00000059448 ENSRNOT00000082459 3 1 1 60 4 88207835 88207854 GTGTTCATGTACTGGGTGGA 60 88207873 88207895 CATATCTCCATAACAGGATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 2 2 2 80 2 165581814 165584191 GGACTGCATTAGTTACAGTTGG 59 165581755 165581778 GAGCTAAAGTTGATCTAAGCATCC 60 NA Rattus norvegicus 81 Yars ENSRNOG00000007213 ENSRNOT00000010674 3 1 1 80 5 147392931 147394230 GAGCTCATCAGAAGAGGAGTC 60 147394272 147394290 CAGAAGGCCTTCTTCAGCT 60 NA Rattus norvegicus 81 Zfp641 ENSRNOG00000032447 ENSRNOT00000045473 1 1 1 123 7 139905236 139905254 CTGTCCCTTCAGGAGAAGG 59 139903289 139904492 TAGTTACTAGGCCCTGGGA 59 NA Rattus norvegicus 81 LOC690206 ENSRNOG00000013566 ENSRNOT00000018127 2 1 1 124 5 155794287 155796644 AGAGAAAGGGTAGCCAACC 59 155796732 155796750 GGATGTGTTGTTGGGTTGG 59 NA InUTR Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 2 1 1 80 1 7305879 7305897 ACAGCAACAGCAACAACAG 60 7305941 7313094 CTCTGTTGCTGTTGTTGCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 3 1 1 82 4 88676060 88684036 AATTTCAGGGAGGAAGCCA 59 88675996 88676014 CCAGACTCAAGCTCATCCT 59 NA InUTR Rattus norvegicus 81 Xab2 ENSRNOG00000000988 ENSRNOT00000001309 1 1 1 80 12 2160173 2161388 GCTTCAAGGCATATGAGCG 60 2160111 2160130 ATTTGGTCAGGTAGGTGCTC 60 NA Rattus norvegicus 81 Xab2 ENSRNOG00000000988 ENSRNOT00000001309 3 1 1 80 12 2161644 2161662 ACCGTGTATACAAGTCGCT 59 2161485 2161601 CCTTGGTTGACTGGAAAGTG 59 NA Rattus norvegicus 81 LOC100363368 ENSRNOG00000024504 ENSRNOT00000036754 2 1 1 86 15 18921963 18921986 GGAGTGGTGACTCTTCTAATAGAG 60 18922030 18923249 CTGGGAGGCCTTAATGAGAG 60 NA Rattus norvegicus 81 AABR07061044.1 ENSRNOG00000046592 ENSRNOT00000074206 1 1 1 60 4 103115475 103115493 CCTGCTTATCAGCATTGGA 58 103115433 103115451 TACCAGGCTCTGACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 80 11 81625125 81625149 GAACCAGCTACTTCATAGAATTCTC 60 81623498 81625087 ACAATCCAAAGACCGGAGG 60 NA Rattus norvegicus 81 Otoa ENSRNOG00000017487 ENSRNOT00000023591 2 1 1 80 1 191089301 191089929 TCAGAATTCAGGGCAGTGG 60 191089970 191089991 TGCTTTCTTCTTAAATCCAGCC 59 NA Rattus norvegicus 81 Fn3k ENSRNOG00000036659 ENSRNOT00000054915 1 1 1 82 10 110640898 110640916 CCAAGCTCAGTTGGATCTC 58 110640962 110641892 GGATCTTCACCTGTAGCCT 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 3 2 2 80 3 2937583 2937836 ACTTGCACAGAGAAGATGG 58 2937521 2937539 CAAACGTATAGCGTCCAGG 58 NA Rattus norvegicus 81 Ndufc2 ENSRNOG00000012383 ENSRNOT00000016509 3 1 1 105 1 162370029 162375107 GTGATGAAAGCAGGTTTGCA 60 162375175 162375193 GGTCCCTCACAGCATACAG 60 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 2 1 1 80 6 37658351 37658370 CTGCATAAAGGTGCTGAAGG 59 37658411 37660957 AAGTGCTTTGTAGTGAACCTG 59 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 3 1 1 80 6 37648205 37648223 GCTTGGAATGCAGTCTGTC 59 37648265 37650427 CTGTAGTGCTTTCTCAAGACG 59 NA Rattus norvegicus 81 Smurf2 ENSRNOG00000014623 ENSRNOT00000019781 2 1 1 80 10 95029125 95029144 ATGAACTCAAACCAAATGGC 57 95026619 95029083 TCCAGTTTACGTAAAGCCTG 58 NA Rattus norvegicus 81 Sv2a ENSRNOG00000021182 ENSRNOT00000028760 3 1 1 80 2 198329717 198329736 CTGCTTCAGTCCAGAGTACC 60 198329777 198330338 AAACCGTAGTAGCTGAAGGAC 60 NA Rattus norvegicus 81 Rps6kl1 ENSRNOG00000005530 ENSRNOT00000007350 3 1 1 170 6 108966545 108973092 ATCATCAAGAAGGTGCAGGT 59 108966050 108966068 GAAGATGGAGTCCTCGCTC 60 NA Rattus norvegicus 81 Kif11 ENSRNOG00000056069 ENSRNOT00000079726 3 1 1 80 1 256072336 256076657 GATCGATTGATGAACTTGTGAC 58 256076696 256076716 TGTTTAAGATGGACACCACAC 59 NA Rattus norvegicus 81 Rcor2 ENSRNOG00000021183 ENSRNOT00000035491 1 1 1 80 15 19605100 19605208 ACATTGAACAGGCACTTGG 59 19605250 19605270 GAGTGAAGTTGGCTAGATCAG 58 NA Rattus norvegicus 81 Pspn ENSRNOG00000049171 ENSRNOT00000071188 1 1 1 91 9 10044828 10044846 GATCTTCAAGAGGCTCCTG 57 10044901 10045007 TTGTTGTTACCCTGATGGG 57 NA Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 1 1 1 80 13 113817914 113817935 GGAAGAGCTACACTTTCTTCTC 59 113814152 113817877 CACAGGCATCAGATAAACTAGAC 59 NA Rattus norvegicus 81 Olr283 ENSRNOG00000030782 ENSRNOT00000043307 1 1 1 60 1 173442367 173442385 GTGCCTCTCATCTCACCTC 60 173442325 173442346 TGCAAATAGGTCATACTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm2 ENSRNOG00000013171 ENSRNOT00000017607 2 1 1 86 8 115347190 115348931 GATTATCGGGTGCAGACCA 60 115347122 115347140 CAACTTGGGTGCAAAGAGG 59 NA Rattus norvegicus 81 Tmed6 ENSRNOG00000020406 ENSRNOT00000027686 1 1 1 80 19 39266737 39266757 TTTCCTTATTGACACCTCCCA 59 39265923 39266698 AGACAAAGCTGATAGAAACCTG 59 NA Rattus norvegicus 81 Slc9a5 ENSRNOG00000028844 ENSRNOT00000068299 1 1 1 82 19 37321107 37323453 AAAGTCTCAGGAAGCCTCG 59 37323499 37323517 CAGGGTAGCTCTTTCTCCG 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 2 1 5 83 1 100201190 100201208 TCGGCGAATACCTATGTGG 59 100201255 100202186 CCTGGTAATTGTCGGTTGC 59 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 3 1 5 84 1 100201188 100201207 CTTCGGCGAATACCTATGTG 59 100201254 100202185 CTGGTAATTGTCGGTTGCG 60 NA Rattus norvegicus 81 Nt5c1a ENSRNOG00000015283 ENSRNOT00000020524 2 1 1 80 5 140896004 140896392 CCTTTGTAAAGGCCCTGGA 60 140896432 140896454 GGACGATGTCAAAGATATCTTCG 60 NA Rattus norvegicus 81 Plekhm2 ENSRNOG00000012163 ENSRNOT00000016333 3 1 1 80 5 160185275 160185293 TCCACTATAAGGCCAGCAC 59 160184964 160185231 AGAGGATCCCATTGCTGAG 59 NA Rattus norvegicus 81 Rgag4 ENSRNOG00000045779 ENSRNOT00000073685 3 1 1 60 X 71960077 71960095 AGAGGCCAGACATAGAACC 59 71960035 71960053 TGCATCAGAAATTCAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scarb2 ENSRNOG00000002225 ENSRNOT00000003052 2 1 1 80 14 17098947 17100996 TCCTCTGTTGACTGTTGTG 57 17101040 17101058 TGCTGATAAGCTTTCAGCA 58 NA Rattus norvegicus 81 Mmp23 ENSRNOG00000017477 ENSRNOT00000066880 3 1 1 80 5 173080431 173080450 AATGTGGAGTGATGTTTCCC 58 173080301 173080391 GGGTAGAAACCTATCTTGAGGT 59 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 1 2 2 80 18 56840132 56840151 TCTTTCCAAGAAGACCACCA 59 56839384 56840091 AATTCCTTGTCTTCTGTCCTG 58 NA Rattus norvegicus 81 Rps2-ps2 ENSRNOG00000060523 ENSRNOT00000084691 2 1 1 60 20 3134745 3134765 CTTTGATGCCATCTTCAAGAC 58 3134705 3134723 TCAATGTTCCAGAGGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr535 ENSRNOG00000050080 ENSRNOT00000065152 1 1 1 60 3 74590267 74590290 CTCCAATGTATTTCTTCCTAACCC 59 74590230 74590250 ATGACAGTTGAGTAACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ell3 ENSRNOG00000022868 ENSRNOT00000036823 2 1 1 80 3 113402716 113402832 AGATTATCTCCTGCAATACAGC 58 113402657 113402676 GCATAGTCGGTCTCAAAGTC 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000020427,ENSRNOT00000047118 1 3 3 80 16 3671825 3674772 GAGAAAGAGTCTAGTTTAATCGACC 59 3674808 3674828 TAGTTTCGAGTCCCTCTTCAG 59 NA Rattus norvegicus 81 Rnls ENSRNOG00000020705 ENSRNOT00000028098 1 1 1 80 1 251902032 251902052 CAGTACATCACCAGTAATCCC 58 251864519 251901991 GCCACATTCTGATGACTCTG 59 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 3 2 2 82 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066374 117066585 ACCACATGAAGCTATAACTACC 58 NA Rattus norvegicus 81 AABR07015066.1 ENSRNOG00000046600 ENSRNOT00000072398 3 1 1 61 14 46588730 46588748 AGAGGGTGTAAATCTCGCG 60 46588773 46588791 CTGTTCACCTTGGAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc48 ENSRNOG00000021303 ENSRNOT00000032685 2 1 1 80 10 46746805 46752501 AACACCTGCTGAACTTAAACG 60 46752543 46752561 TCTCATTGCACTCCGTCAG 60 NA Rattus norvegicus 81 Lrrc48 ENSRNOG00000021303 ENSRNOT00000032685 3 1 1 80 10 46755332 46757032 AATGTCCAAAGTCTGATCGC 59 46757075 46757093 GGTGTTGATGGCAATCTCC 59 NA Rattus norvegicus 81 Olr271 ENSRNOG00000055938 ENSRNOT00000088537 1 1 1 60 1 172807570 172807590 CCATGTACTTCTTTCTCAGCC 59 172807611 172807630 GTGACAGAAGATGAGTAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npas4 ENSRNOG00000020009 ENSRNOT00000027119 1 1 1 80 1 220263145 220263284 ACTACCCTATCAGTGACACG 59 220263084 220263102 CTAGGACATAGGCTGCCTG 59 NA Rattus norvegicus 81 Cnn1 ENSRNOG00000027736 ENSRNOT00000029577 2 1 1 80 8 23116822 23116842 ATTTATCAACAAGCTCCAGCC 59 23116884 23118069 CCTATGTTCTCCAGCTGGT 59 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 1 1 1 60 1 81595368 81595386 GACCATTGAATCTGCACCT 58 81594288 81595346 ACCTATATCTACGAGCAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363642 ENSRNOG00000046832 ENSRNOT00000072047 2 1 1 60 X 73600810 73600828 CAAATGCTGAAGGACATGG 57 73600768 73600787 CTTGGCTTCTTAAATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562229 ENSRNOG00000006356 ENSRNOT00000034584 3 1 1 91 14 114850328 114850346 AGTGACTTCCAGAAGCCAG 59 114835940 114850275 GAGGTAAGTGGAACTATCCCA 59 NA Rattus norvegicus 81 Ccdc127 ENSRNOG00000012775 ENSRNOT00000017779 3 1 1 97 1 31540241 31543447 AGCGTTTCGTTGGATTTGG 60 31540162 31540180 CAAGATCCTGCTGGAAAGC 59 NA Rattus norvegicus 81 Rxfp1 ENSRNOG00000024120 ENSRNOT00000033107 1 1 1 80 2 178433964 178433985 CTCAGTCACAACAGAATAACCT 58 178433818 178433926 GTCTTCAATTATCAGCCATTCC 58 NA Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 2 2 2 80 4 155333365 155333386 GCTTGTACAAGACTGTACTCTG 59 155333427 155334229 CATGCGACGTAAACTGGTG 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999,ENSRNOT00000076272,ENSRNOT00000087506 1 3 4 80 13 78490577 78492397 AAGGCAACTTTAGTCCTGTG 58 78490516 78490537 TCACAACCTTCTTCTCTATTCC 58 NA Rattus norvegicus 81 Hoxa3 ENSRNOG00000006281 ENSRNOT00000008447 2 1 1 145 4 82140880 82140898 CAAGGCAGAACACTAAGCA 58 82139385 82139403 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Kin ENSRNOG00000026690 ENSRNOT00000039689 2 1 1 80 17 72206332 72206351 TCATCAAAGACAGCTGTTGC 59 72201611 72206292 AAGTCATTTCGGAATTCCTCTG 59 NA Rattus norvegicus 81 AABR07043701.1 ENSRNOG00000050237 ENSRNOT00000072022 3 1 1 80 19 36155323 36155342 TAGAGGTGGAGAACACTGAG 58 36153890 36155281 GACTGAGCAGGTTTCTAGAG 58 NA Rattus norvegicus 81 AABR07005844.1 ENSRNOG00000034038 ENSRNOT00000027919 3 1 1 80 1 203190913 203192423 TAAAGAAGCTCCGTTTCCC 58 203199395 203199413 GTCAGTAAACCTCCACAGG 58 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799,ENSRNOT00000027574 2 2 2 80 1 267049438 267049457 CCATTGCTGAATTCCAGTCC 59 267048494 267049397 AGTTCTTGTCGATGACCTCTG 60 NA Rattus norvegicus 81 Tmem201 ENSRNOG00000023152 ENSRNOT00000047763 2 1 1 80 5 166675481 166676158 CAAAGCACACTGTGGATACG 60 166675420 166675440 ACTCGTCCTCTTTCTTGATGG 60 NA Rattus norvegicus 81 Ifi30 ENSRNOG00000019387 ENSRNOT00000026225 1 1 1 81 16 20429360 20430174 TCAACGAGAAACCGTTGAC 58 20430306 20430324 ATGTCTGGCTTCTCTGTCC 59 NA Rattus norvegicus 81 LOC679683 ENSRNOG00000031585 ENSRNOT00000042949 1 1 1 60 3 117854149 117854170 GTCCATGTTACCGATCTTTCTG 59 117854191 117854209 CCTTCATTCCACCAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016805.1 ENSRNOG00000028222 ENSRNOT00000037897 3 1 1 60 14 115116758 115116776 CGACACCAACTGTTACAGC 59 115116716 115116735 AGGACAGATGGAACTGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447,ENSRNOT00000087632 1 2 2 80 7 142158376 142161674 GATACTGGACATCGATATCCC 57 142158316 142158335 AACTCCACTGTGTTTAGCTG 58 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368,ENSRNOT00000080352 2 2 2 80 1 48558001 48558019 CGAGAACAGCAAGACTTCC 59 48553833 48557962 TTACACTCTGACAGATACACTCTC 60 NA Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 1 1 1 80 3 112670621 112670639 TTTGCTGACCACATTGTCC 59 112670234 112670579 GACCAAACTCCGATGTAAGTG 59 NA Rattus norvegicus 81 Olr1433 ENSRNOG00000038413 ENSRNOT00000058503 3 1 1 80 10 44293689 44293754 ATCATCTACATGTACATGCAGC 59 44293792 44293813 GACAATGTTGTAGAAGAGGGTG 59 NA Rattus norvegicus 81 LOC683295 ENSRNOG00000009160 ENSRNOT00000039417 2 1 1 80 7 143273392 143273414 GAGAATTCAGGATGTACTGAAGG 59 143273050 143273355 GCTGATTTCATCGTCATACTGG 60 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000022466 ENSRNOT00000038096 3 1 1 81 4 123112423 123112442 CCATGAAACTCCTAGCAGTG 58 123109955 123112380 ATTAGGCAGTATCAACCCGT 59 NA Rattus norvegicus 81 Anxa13 ENSRNOG00000007980 ENSRNOT00000064847 2 1 1 80 7 98239854 98247824 AAGGAATGGGAACGGATGAG 60 98239793 98239811 TCTGCTTTATCTGCTGCCT 59 NA Rattus norvegicus 81 Anxa13 ENSRNOG00000007980 ENSRNOT00000064847 3 1 1 80 7 98239854 98247823 AGGAATGGGAACGGATGAG 59 98239792 98239810 TTCTGCTTTATCTGCTGCC 58 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364,ENSRNOT00000089042 1 2 2 80 2 189388150 189391391 GAAATCCAGACACGCATTCC 60 189388089 189388109 ATTCAGTTTGTCCACCATCCT 60 NA Rattus norvegicus 81 Etv5 ENSRNOG00000001785 ENSRNOT00000002445 1 1 1 80 11 82197645 82197793 TTATGGTCCCAGGGAAATCTC 59 82197834 82197853 CTGTGTCCACAAACTTCCTC 59 NA Rattus norvegicus 81 Olr1468 ENSRNOG00000052919 ENSRNOT00000026857 1 1 1 80 10 59973588 60126622 CTATGCCCTGTTCCTGTCC 60 59973526 59973546 TGGGAATCCAGTAGAATGAGG 59 NA Rattus norvegicus 81 Cxxc4 ENSRNOG00000045764 ENSRNOT00000072196 2 1 1 80 2 239415062 239415082 CTAATTAAAGGCAGACTGGCA 58 239415121 239417635 TATCCTCCAACTGTTACAACAG 58 NA InUTR Rattus norvegicus 81 LOC100360143 ENSRNOG00000049910 ENSRNOT00000073109 3 1 1 85 8 37557116 37557765 GCTTCCTACAAGCTCTGAC 58 37557811 37557832 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Wdr12 ENSRNOG00000017340 ENSRNOT00000023463 3 1 1 80 9 66860734 66860753 TAGCAGTTGATAGCTCTGGA 58 66858584 66859462 CTGTAGGGACTGTAGACCA 57 NA Rattus norvegicus 81 Dis3l ENSRNOG00000010537 ENSRNOT00000014071 3 1 1 80 8 69771678 69771699 CAAGATCATCTCTACCACAGCT 60 69771537 69771638 TGGACAGAAATCCTTACCGT 59 NA Rattus norvegicus 81 Olr832 ENSRNOG00000048539 ENSRNOT00000049091 1 1 1 60 4 148711529 148711548 TGTTTCATACAAGCCTTCGT 58 148711488 148711506 CAGCCATGAGAAGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561195 ENSRNOG00000030383 ENSRNOT00000046725 3 1 1 60 5 83647970 83647988 GGTGACCCAAGAATACACC 58 83647928 83647946 CTTCTTGAAGCCCACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363064 ENSRNOG00000001027 ENSRNOT00000042857 1 1 1 80 12 2716573 2716591 CACATTGGAAGACCAGGGA 59 2716633 2716764 GTCAGATGTCCTTGCAAACTC 60 NA Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 1 1 1 80 2 189639362 189639380 AGTCTTCGACGTTCCTCAG 59 189639420 189639619 GCTAGACATCAGAATTTCTAGGG 59 NA Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 3 1 1 80 2 189635050 189635070 CTCACTGTCTTTATCACACCC 59 189635110 189635215 CCCATCATAACAGTACTGAGG 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274,ENSRNOT00000050188 1 2 2 80 5 173076747 173076891 TCCTTGGTGCTAAGGAATACTC 60 173076930 173076950 GTTTCTGTGTCAGCAGTTCTC 60 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 2 2 2 81 9 17225332 17225353 CTTGTCGCAGATTACTACATCG 59 17225395 17227329 TGCAGTTCAGGCTGTAGAG 59 NA Rattus norvegicus 81 Il23a ENSRNOG00000003254 ENSRNOT00000004363 1 1 1 80 7 2711670 2711942 AACAGCCAGTTCTGTTTGC 59 2711608 2711626 CCCTGTGAAGATGTCCGAG 60 NA Rattus norvegicus 81 Olr788 ENSRNOG00000031865 ENSRNOT00000046162 3 1 1 60 3 103300688 103300708 ACACTCTTCAAGTGGTTTCTC 58 103300648 103300669 CACTACTAAGACATGAGCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo18 ENSRNOG00000018549 ENSRNOT00000025228 1 1 1 80 17 70423068 70423086 GATCATGTGCCCATTTGGT 59 70423128 70423829 AAGAACACCATTCAGCTTCTC 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 3 2 2 80 7 143692858 143692970 ATGACCGAGGCTATGACTC 59 143693014 143693032 CTCTGTAGTCGTCATCCCT 58 NA Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000063807 2 1 2 81 15 24090880 24090902 CTGAATAATCCTTACCAAGTGCC 60 24090943 24101147 GCTACTTCAGCAAAGCGTG 60 NA Rattus norvegicus 81 Adat1 ENSRNOG00000019434 ENSRNOT00000026309 2 1 1 80 19 44208839 44208860 CAAAGGAAGTTGTCTCAATGGG 60 44206531 44208798 CATTGAGGATGTCTCCGCT 60 NA Rattus norvegicus 81 Nap1l5 ENSRNOG00000007808 ENSRNOT00000010263 3 1 1 87 4 89150635 89150653 GAGGAAGAAGAGGAGGCTG 59 89150307 89150585 TCAGTCTCAAGTCTGTCAGC 60 NA InUTR Rattus norvegicus 81 Dlgap5 ENSRNOG00000010721 ENSRNOT00000015553 1 1 1 80 15 24188636 24189512 TGGACAAGATCATTTCTTCCCA 60 24188577 24188595 CGTTTGTCACACTGCTCTG 60 NA Rattus norvegicus 81 AC239701.1 ENSRNOG00000060437 ENSRNOT00000088616 2 1 1 60 Y 67340 67359 AACAGCCATTTCCAAAGCAG 60 67299 67320 GTAGGAGATGAAGTAAGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pan2 ENSRNOG00000032441 ENSRNOT00000050792 3 1 1 80 7 2729813 2729831 TGAAGCGAAGTATTTGCCT 58 2729875 2730055 GGGTCTGAATTGTAGGCTG 58 NA Rattus norvegicus 81 RGD1562755 ENSRNOG00000028963 ENSRNOT00000051559 1 1 1 60 14 58878132 58878150 ACAGGCCGTAAAGAAACTC 58 58878172 58878192 AGGCTGTATCAGGGTATTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger2 ENSRNOG00000050968 ENSRNOT00000075209 1 1 1 91 15 19339132 19339150 CTTCTATGGCGGAGGAGAC 59 19339203 19349300 AGCAAAGATTGTGAAAGGCAG 60 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000089279 2 1 2 60 7 143597034 143597053 CATAGCCGAGTAGTGACCAG 60 143596993 143597011 CCACAGATGGAGAGGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407,ENSRNOT00000015828 3 2 2 81 4 81255951 81256685 TCATGAAATGGAAGGACTCAG 58 81256728 81256746 GCGATGACAATCTGAGGAC 58 NA Rattus norvegicus 81 Cacna2d3 ENSRNOG00000031287 ENSRNOT00000048043 1 1 1 80 16 5119297 5124760 TAACCATTGAAGAAGGGCTC 58 5119091 5119110 GATCAGTGTTGCAGTAGGAC 58 NA Rattus norvegicus 81 Cacna2d3 ENSRNOG00000031287 ENSRNOT00000048043 2 1 1 80 16 5119297 5124759 AACCATTGAAGAAGGGCTC 58 5119090 5119109 AGATCAGTGTTGCAGTAGGA 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 2 2 2 82 10 67839752 67842227 GCAGTCAGGTATTATTCATGCA 59 67842270 67842288 CATAGCCTTCGAATGCCTC 59 NA Rattus norvegicus 81 LOC100363268 ENSRNOG00000029339 ENSRNOT00000042985 1 1 1 60 2 195940790 195940808 CCTTACAAGAATGCCGCTC 59 195940832 195940850 CATGTGCGCATTCTATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Synpo2l ENSRNOG00000008949 ENSRNOT00000011956 1 1 1 80 15 4064798 4066022 ACAGGTATCTAAGATCCGAAGAC 59 4066061 4066080 CCGTTGATCGATAAGAGCTG 59 NA Rattus norvegicus 81 Slc52a2 ENSRNOG00000032561 ENSRNOT00000047380 1 1 1 87 7 117606905 117606923 TACCTGATGACACTGGCAG 59 117606974 117607097 GTACCCATGAAAGCACCAC 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 2 4 4 143 5 152682877 152683360 GGCATCTTCTGATATTCAGGTG 59 152683464 152683482 TCCTCCAGGGAAAGATCCT 59 NA Rattus norvegicus 81 Slc45a1 ENSRNOG00000018229 ENSRNOT00000024581 3 1 1 84 5 167672525 167673675 AGTAAGAAGTTTGCAGGGTC 58 167672460 167672478 GAAAGTACTGGCAGCTGAG 58 NA Rattus norvegicus 81 AABR07032255.2 ENSRNOG00000031591 ENSRNOT00000042496 3 1 1 82 18 56965598 56965617 TGGGTGATATTCCTGGAGTC 59 56965660 56965681 TTTCCTTCTGCCTTTGTACAG 59 NA Rattus norvegicus 81 Ttc5 ENSRNOG00000008850 ENSRNOT00000011741 1 1 1 80 15 27707896 27707914 CCACGTCATGGATAGTGTC 58 27705866 27707852 CCCAGGATATACCAGGAGC 59 NA Rattus norvegicus 81 Fam188a ENSRNOG00000016955 ENSRNOT00000022986 3 1 1 80 17 79729851 79740160 CCTATGACCCAGAAGATAATGGA 59 79729793 79729813 GATCTGAAACAAGGTCCAAGG 59 NA Rattus norvegicus 81 Tle6 ENSRNOG00000006350 ENSRNOT00000008360 2 1 1 80 7 10983846 10983864 TCAAGTCTCCCTCAGACCT 59 10983908 10984004 TTCCAGAAGACTCCTGGGT 60 NA Rattus norvegicus 81 Mapk4 ENSRNOG00000015401 ENSRNOT00000047271 3 1 1 85 18 69906558 69943112 CCCACAAGGGTTATCTGTC 58 69906491 69906509 TTTCGTGTAGTTGTTCGGG 58 NA Rattus norvegicus 81 Fgfbp3 ENSRNOG00000022796 ENSRNOT00000033780 1 1 1 80 1 255557035 255557054 ACAGACAGCCGTATAAAGCA 60 255556690 255556992 TCCTCGGATCGAATTCCAG 59 NA InUTR Rattus norvegicus 81 pramef20l ENSRNOG00000043130 ENSRNOT00000065599 3 1 1 82 14 15449737 15449758 ATTCAATTGTCTCCAGCATCTC 59 15449801 15450594 TCATCAGGCTCCTGAAGAC 59 NA Rattus norvegicus 81 Taar7c ENSRNOG00000047825 ENSRNOT00000050763 1 1 1 60 1 22507279 22507297 GACTCCATCATTGACGCCT 60 22507237 22507261 CTAGGATTTCATACATATACGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar7c ENSRNOG00000047825 ENSRNOT00000050763 2 1 1 60 1 22508057 22508076 ACCTGAACAGATCCTGTGTC 60 22508016 22508034 GCATAGAGGATGAGGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 1 2 2 80 13 99234195 99234214 ATCTACCTCTTCCTCACCGT 60 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Lrriq1 ENSRNOG00000004564 ENSRNOT00000071306 3 1 1 80 7 45175771 45175790 CAAGCGTGTATCTGTTCCTG 59 45172690 45175729 CTCAAATCAGCCTCATCTGG 59 NA Rattus norvegicus 81 Olr240 ENSRNOG00000030648 ENSRNOT00000049763 3 1 1 60 1 172100824 172100843 CAGTGGTCATTCCTATGCTC 58 172100865 172100884 TCCTTTACATCCCTGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ina ENSRNOG00000020248 ENSRNOT00000027417 1 1 1 80 1 266783903 266783921 CCAATGAATCCCTGGAGAG 57 266783965 266790180 CAATGCTATCCTGGTAGCC 58 NA Rattus norvegicus 81 Olr528 ENSRNOG00000061596 ENSRNOT00000013150 1 1 1 60 3 74475405 74475423 TCTCTGTGCTGTTTCTCCT 58 74475363 74475383 AGTATCATGCCTATGTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000064792,ENSRNOT00000037399 1 2 2 80 3 11406512 11406532 ACAGTAACTCAGAATTTCGGC 59 11406571 11406934 GGTTCTTGGCTTTGTATTTCTG 58 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 3 3 3 80 11 67635526 67635545 GGAACACTGACTTGAAGAGG 58 67635588 67637691 GTCTGTAAGACTGGGTTGG 58 NA Rattus norvegicus 81 LOC100912022 ENSRNOG00000046099 ENSRNOT00000073972 2 1 1 60 4 1514095 1514116 TATGTATTGACTTCGATGGCCT 60 1514132 1514155 TATACATCAGTGGGTTACAGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pigm ENSRNOG00000007735 ENSRNOT00000010551 2 1 1 60 13 90760463 90760482 CTCCTGCATACGTTCTAGAG 57 90760502 90760523 CCAGCTAACCAAATAAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 3 2 2 119 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410035 266410053 TTGATTTCATGTTGCCGCT 59 NA Rattus norvegicus 81 AABR07055827.1 ENSRNOG00000059620 ENSRNOT00000091611 2 1 1 92 7 10629668 10629689 ATGACCTTGTCACCGAGAG 59 10629745 10629763 CTTCTTCACCCATCAGGCT 59 NA Rattus norvegicus 81 Megf9 ENSRNOG00000005932 ENSRNOT00000007812 1 1 1 80 5 86644983 86645003 GAATCACACTGTTGGTCTCTG 59 86618193 86644943 TTCCCAGAACTGTTACAGAGG 60 NA Rattus norvegicus 81 Snw1 ENSRNOG00000037998 ENSRNOT00000057807 3 1 1 80 6 111484491 111484595 AGACCAACAGATTTGTTCCTG 59 111484431 111484451 CAAACTGAACTGGTCCTTCTC 59 NA Rattus norvegicus 81 Capza3 ENSRNOG00000008727 ENSRNOT00000011555 3 1 1 60 4 174182210 174182229 TTGAAGACCACAGCTATGAC 58 174182249 174182270 ATCCACTTAGACTTCCAAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr517 ENSRNOG00000032434 ENSRNOT00000046947 3 1 1 60 3 74058293 74058312 CCCAGTGAACAATGTGACAG 59 74058335 74058353 AGCATCATCAGTGAAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671,ENSRNOT00000065542,ENSRNOT00000066928,ENSRNOT00000091318 3 4 4 80 15 841906 845867 AACATCATGAGAGTGATCTCC 57 845909 845927 CTTGTTGTGATACTGCAGC 57 NA Rattus norvegicus 81 Sesn3 ENSRNOG00000008173 ENSRNOT00000011008 3 1 1 80 8 12868346 12868364 GATGTTGACACTACCACGC 59 12868403 12869645 GTCATAGTCATCATACCTGATTCC 59 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 1 1 3 88 7 42331550 42337817 GTCCTGAGAAAGGGAAAGC 58 42337869 42337887 TACAAGCGAAATGAGAGCC 58 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 3 1 1 68 7 123088735 123088755 AAGTACGAGGCCAGTTCAG 59 123088685 123088703 CTTCTGAGCCCTTTAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mir378b ENSRNOG00000048754 ENSRNOT00000072291 2 1 1 60 5 5575675 5575693 ACAGTGGACTTGGAGTCAG 59 5575633 5575651 CAGTGATAGTCCATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmm1 ENSRNOG00000005358 ENSRNOT00000007164 1 1 1 82 7 123185158 123185176 AAGATCCGGGAGAAGTTCG 59 123184382 123185114 CTTATCATACCTCCTCGGGAG 59 NA Rattus norvegicus 81 Fam178b ENSRNOG00000023941 ENSRNOT00000037570 1 1 1 80 9 43204550 43204570 AACATCTTCGAGAGCATTTGG 59 43187573 43204509 AAACGCATGTCTTCATCAGG 59 NA Rattus norvegicus 81 Fam178b ENSRNOG00000023941 ENSRNOT00000037570 2 1 1 80 9 43204550 43204569 ACATCTTCGAGAGCATTTGG 58 43187572 43204508 CAAACGCATGTCTTCATCAG 58 NA Rattus norvegicus 81 LOC360919 ENSRNOG00000039504 ENSRNOT00000060548 3 1 1 80 14 19069024 19069045 GATCTCACTGGAAAGTGTAAGC 59 19062922 19068984 AAGGAAGGTAGCCATCAGTC 59 NA Rattus norvegicus 81 Sec14l5 ENSRNOG00000002917 ENSRNOT00000061253 3 1 1 85 10 10594737 10594755 ACAAGAACTGGATCCTGGG 59 10592972 10594688 ATGGGAACCCTGAATGCTC 60 NA Rattus norvegicus 81 LOC100909740 ENSRNOG00000047484 ENSRNOT00000072302 1 1 1 100 4 82193193 82194360 ATCGATCCCAATAACCCGG 59 82193111 82193129 TCTTTCTCCAGTTCCAGCG 60 NA Rattus norvegicus 81 Larp1b ENSRNOG00000038366 ENSRNOT00000090861 1 1 1 80 2 127863253 127865657 GTGATACACGAAGTTGGAGAC 59 127865699 127865717 TACCACCCTCACTTCTCAC 58 NA Rattus norvegicus 81 AABR07032657.1 ENSRNOG00000049921 ENSRNOT00000074465 1 1 1 80 18 76317241 76317295 TGACGTCATAAAGCGACGA 60 76317337 76317357 CTCTGGCATGTTTCATAGCTC 59 NA Rattus norvegicus 81 Olr516 ENSRNOG00000049954 ENSRNOT00000073426 2 1 1 60 3 74014017 74014038 TCCTCTTCATGTATGTAAGACC 57 74013978 74013999 GACACTATCATATCATGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 2 2 2 80 20 29055376 29055394 GGTGTTTCTCCGACAACTG 59 29054297 29055332 GCAACTCGAACACCATCTG 59 NA Rattus norvegicus 81 AABR07065012.1 ENSRNOG00000032248 ENSRNOT00000047825 2 1 1 60 6 103948999 103949017 ATGCTTCGGATGAATTCCA 57 103948957 103948975 CCTCTATGGTCTCCTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsl3 ENSRNOG00000014718 ENSRNOT00000020161 3 1 1 80 9 84575081 84576935 ACTTCCAGCTTGTTACACTG 58 84576978 84576996 TGTTGGTCACCTCTGTCTC 59 NA Rattus norvegicus 81 Ptchd2 ENSRNOG00000026447 ENSRNOT00000036647 3 1 1 80 5 165073173 165081776 CAGTCTACTAGCAAAGTCCAG 58 165073113 165073131 GTCGTTATTGAAGGTCCGG 58 NA Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000088264,ENSRNOT00000066546 2 2 2 80 15 18882591 18882609 AAGCTGGAGAATGTGTCTG 58 18834530 18882549 GATGGCTTTACTGTCAATGGA 58 NA Rattus norvegicus 81 Rn60_X_0559.1 ENSRNOG00000051159 ENSRNOT00000076038 1 1 1 60 X 55635732 55635752 AACCTCTTGTAGGAGAAACAG 57 55635774 55635792 CCAAGCCAGCAATGATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnmtl1 ENSRNOG00000037238 ENSRNOT00000056278 1 1 1 90 10 64401878 64404289 CTTACTCACCAAAGGCTGTG 59 64404342 64404360 ATTGTTCACAATGGGCACC 59 NA Rattus norvegicus 81 AABR07054721.1 ENSRNOG00000048632 ENSRNOT00000049457 1 1 1 60 3 167759250 167759270 GTAGTGACCTATGAGGATGTG 57 167759210 167759228 GATCCAACAAAGCCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 1 2 2 80 8 117269290 117269675 CCTTCAAGACATTTCGTCCT 58 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 3 2 2 80 8 117269289 117269675 ACCTTCAAGACATTTCGTCCT 60 117269717 117269735 ATATCGGTAGACACGCCAC 59 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 3 2 2 80 4 99528185 99528203 CCAAGACAGCAGAACACTC 59 99526341 99528142 CTGCTTGTGACATCCTTGAG 59 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 3 2 2 93 1 204761788 204761806 AGAAGATCGGTGTGAAACG 58 204718390 204761731 AAGGTCTGACAGTTCTGTG 57 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345,ENSRNOT00000045237 2 2 2 80 5 160139306 160139326 GGATCATCGCTCATTTCTGAC 59 160138778 160139264 CTTTGATGGAGCCTGTAGC 58 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332,ENSRNOT00000001437 1 2 2 80 12 13154978 13154997 TGATCGTCCTCCTTGTTCTC 59 13148874 13154936 AAATGGTTCCTCTCATGCTG 58 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 1 1 2 80 9 84406563 84410996 GAGTAATGGGCCAGTTTCAG 59 84411038 84411057 ATGACTGAGATGTTCCCACC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 3 6 7 85 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920369 102920387 CCATGCAGAAGATCCAGTG 58 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185,ENSRNOT00000088661,ENSRNOT00000040742 2 3 3 80 X 120948051 120948071 TCTAGAAGAGAATGCCTTTGC 58 120948110 120952371 ATATCTGTCATCTCTTGGATGG 57 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 1 1 1 89 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476955 111480919 TCTTAGCTCACTCGATGCC 59 NA Rattus norvegicus 81 LOC690617 ENSRNOG00000039861 ENSRNOT00000061194 3 1 1 113 7 11216622 11216911 AGGAGTTCGTGGTCAACAG 60 11216987 11217006 GTTTGAAGTCCTGTGCAGTG 60 NA Rattus norvegicus 81 Ipmk ENSRNOG00000000609 ENSRNOT00000000748 3 1 1 80 20 18471929 18474754 ATACCATGGTTTACGCTGC 58 18471867 18471885 AGACGCCATAGTACTTGGG 59 NA Rattus norvegicus 81 Olr540 ENSRNOG00000048820 ENSRNOT00000048376 3 1 1 60 3 74669814 74669834 CTTTCATGTTCTGATGCACAC 58 74669774 74669794 CAATCACTCCAGAGAAGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supt7l ENSRNOG00000004927 ENSRNOT00000006543 2 1 1 81 6 26248003 26249530 ATGCTACAGATTAGTAAGCAGC 59 26249571 26249590 CAGGCTTAGTGTCTTCTGTG 58 NA Rattus norvegicus 81 AABR07035501.1 ENSRNOG00000049220 ENSRNOT00000072986 3 1 1 69 12 18227516 18227534 TCACTGTGGCTATTGGTGG 60 18222300 18222319 AATTCTGGAGTTCCCAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Abhd12b ENSRNOG00000026855 ENSRNOT00000036933 1 1 1 80 6 92586306 92596218 TGCTAAAGCTCTATGAAATCGC 59 92596259 92596277 GGTAGCCAGGAGGAAAGAC 60 NA Rattus norvegicus 81 Abhd12b ENSRNOG00000026855 ENSRNOT00000036933 3 1 1 80 6 92586248 92586267 GCCATTGTCTTAGAAGCTCC 59 92586307 92596219 TGCGATTTCATAGAGCTTTAGC 59 NA Rattus norvegicus 81 RGD1559588 ENSRNOG00000045868 ENSRNOT00000074970 2 1 1 80 12 19890774 19890793 AACAGAATCTGGCTATGGCT 59 19890834 19891149 GATATCCTGCTGAATTCCCAG 58 NA Rattus norvegicus 81 Ppp1r2 ENSRNOG00000001733 ENSRNOT00000002361 3 1 1 81 11 73022102 73022122 GCAACATATCATCCAGCTGAC 60 73022160 73025624 CACCTATCATATTGTGGTATGGAG 59 NA Rattus norvegicus 81 Olr219 ENSRNOG00000047623 ENSRNOT00000045360 2 1 1 60 1 170932820 170932842 GATTTCAGTGTTCTACTCAGCAG 60 170932782 170932802 TCTCAGGCTGTAAATAATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tet3 ENSRNOG00000011387 ENSRNOT00000015296 1 1 1 80 4 115085464 115104281 TTGTGTCGAACAAATAGTGGAG 59 115085405 115085423 CGGATAGAGGCTACTGTGG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431,ENSRNOT00000031653 3 2 2 81 12 2214015 2214037 GAGTATGAGAACATAGCCTTCAG 59 2214076 2215092 GCTTGAACTTGACTTGTTGTG 59 NA Rattus norvegicus 81 Mfsd12 ENSRNOG00000039858 ENSRNOT00000061191 2 1 1 80 7 11219227 11219745 CCAGCTTTCTATCAGGTAGG 57 11219166 11219186 ATACATGGCAATGTAGGTCTG 58 NA Rattus norvegicus 81 Olr522 ENSRNOG00000049234 ENSRNOT00000047747 1 1 1 60 3 74255442 74255461 GCTGGTGCTACTTTATTGCT 59 74255401 74255419 AGAGAACGGACACATAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp512 ENSRNOG00000039815 ENSRNOT00000006658 3 1 1 80 6 26294873 26294893 CTGTGGGAAACCATACAAGTC 59 26293426 26294832 GACTCTGGGAAGAAGACAGG 60 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 3 1 3 90 20 31273160 31273178 GTCACAGGAATCACTGGCT 60 31275566 31276866 AGGGTCCTTTGTAGCAATCTC 60 NA Rattus norvegicus 81 Fcna ENSRNOG00000017063 ENSRNOT00000023022 1 1 1 80 3 2853070 2853090 TTTCCAGTACTGCTCTGTCTC 60 2852811 2853032 ACCTACGATCTTAACATCTGGAC 60 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000080822 3 1 3 72 20 3439751 3439769 CCTCGAGTGGTGAGTATCG 59 3439697 3439718 TCTAGTTGTTCCCAAAGGTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 2 2 2 80 14 21052110 21052130 GTGCACTTTGATACCCATGAG 59 21052167 21052715 CAGCTCAATATACCTATGTTGGAC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 3 2 5 82 9 43821827 43821848 CGAGACAACTTTCAGTAAAGGA 59 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076976,ENSRNOT00000084238 3 2 3 91 2 154589425 154589444 GTCTGTGGTTATTCGAACCT 58 154589498 154590551 TTAGCACCACCTCTACAGG 58 NA Rattus norvegicus 81 Caskin2 ENSRNOG00000004310 ENSRNOT00000005942 3 1 1 81 10 104347468 104347561 GGATGACACCTGAGGATCTG 60 104347406 104347424 AGCTGAGCAATCTCTGAGG 59 NA Rattus norvegicus 81 Brox ENSRNOG00000052963 ENSRNOT00000078834 1 1 1 80 13 101680005 101680854 CAAGGATGACAGTATCAAACCC 59 101679946 101679970 GTGTCTTTCTGAGGTTTGATATCTG 60 NA Rattus norvegicus 81 Brox ENSRNOG00000052963 ENSRNOT00000078834 2 1 1 80 13 101680000 101680849 ATGACAGTATCAAACCCAAACC 59 101679941 101679959 ACCCAGTGTCTTTCTGAGG 59 NA Rattus norvegicus 81 Slc47a2 ENSRNOG00000038055 ENSRNOT00000057907 1 1 1 80 10 47593602 47593622 CATTGGTTACTACGGGTTTGG 59 47590365 47593560 GCCCAGAGGCCTATTATCC 59 NA Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 3 1 1 98 3 12454338 12467444 TGCAATTCAAGATTACGTCTCG 60 12454261 12454279 TAGTTGGCTCAGAACGGTG 60 NA Rattus norvegicus 81 LOC100362298 ENSRNOG00000030107 ENSRNOT00000048495 2 1 1 60 5 117509573 117509592 CCACGACAATACAAGATCCC 59 117509612 117509633 TCCTATCCTTTACGTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb1bp2 ENSRNOG00000003596 ENSRNOT00000004888 1 1 1 80 X 71345551 71345572 CCACTTCTTATATCTCAAGCCC 58 71345613 71345738 ATTGTCAAGTCCTGCTCCA 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 1 3 3 80 12 11604619 11605067 TTTATCAGGTCCAGATCGCA 59 11604558 11604577 TCTCTTCCTTCATCCTCACC 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 3 3 3 80 12 11604621 11605071 GACATTTATCAGGTCCAGATCG 59 11604562 11604580 TTCCTTCATCCTCACCGTC 59 NA Rattus norvegicus 81 Tm7sf2 ENSRNOG00000020989 ENSRNOT00000028485 3 1 1 80 1 221429138 221429156 TCAGCCTCCTTCTCTATGC 59 221428996 221429097 ACACAGAATTTCCTGAGTTTCC 59 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000081770,ENSRNOT00000072868 1 3 3 80 9 10454609 10454703 AACAACCAAGTCAGGAAGC 58 10454547 10454565 TTCACACTGATGACAGGCA 59 NA Rattus norvegicus 81 Ppp1r18 ENSRNOG00000000816 ENSRNOT00000001084 3 1 1 86 20 3389092 3394432 ACAAACAGCTCAAGATCTCC 58 3389025 3389044 CTAGATCCTCCAGTACCGAG 58 NA Rattus norvegicus 81 Taf7l ENSRNOG00000026315 ENSRNOT00000045556 2 1 1 80 X 105296211 105296232 AGGAAATAGAAAGTCAAGGGTG 58 105295772 105296173 CATCATATTCTGATGAACCAGC 57 NA Rattus norvegicus 81 Papd7 ENSRNOG00000017613 ENSRNOT00000023712 2 1 1 80 1 36419472 36421400 TTGACAAAGCTACAGTGCC 58 36421441 36421462 TCTCCATGTTAAAGCTGATGTC 59 NA Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 2 1 1 60 10 86565275 86565293 CAACCAGCTAGCATCTGTG 59 86565317 86565335 CAGGTTCACTTGGATCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpx ENSRNOG00000018257 ENSRNOT00000024710 2 1 1 80 1 170430682 170430781 CAGATGTAATCGAACACTGC 57 170430621 170430639 TAAAGAACAGCATGGTCCC 57 NA Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000056996 2 1 2 80 4 55011325 55011344 AATTATCAAACGCCTGCTGG 59 55010450 55011286 AATATCCTCCTGATGTCATCCTC 59 NA Rattus norvegicus 81 Rn60_X_0746.5 ENSRNOG00000051197 ENSRNOT00000075930 2 1 1 60 X 73730285 73730303 TTGCCCATGATGTAGACCC 60 73730243 73730261 ATCTTTCGACAAAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909940 ENSRNOG00000061224 ENSRNOT00000080494 2 1 1 60 3 74781699 74781717 GGAAGAAAGCCTTCTCCAC 58 74781657 74781676 GTACCGTAGAACACAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cygb ENSRNOG00000011541 ENSRNOT00000016067 2 1 1 94 10 105622690 105627787 CCTGGTGAGGTTCTTTGTG 58 105622614 105622632 GAGGACTCCTCTCCATCTC 58 NA Rattus norvegicus 81 Fam185a ENSRNOG00000048371 ENSRNOT00000074662 1 1 1 107 4 10269374 10269392 AGACGACATTGATCCCGAG 59 10266541 10266559 ATATTCTGCACGCTCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp219 ENSRNOG00000011544 ENSRNOT00000015418 1 1 1 63 15 28403722 28403740 CCTCAAAGTGCATCTTCGC 60 28403442 28403460 ATAGTCGCAGTGTGGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Ifitm1 ENSRNOG00000004273 ENSRNOT00000005645 2 1 1 81 1 213766958 213766976 GTCCCTGTTCAATACGCTC 58 213767020 213767529 CCTGTCCCTAGACTTCACAG 59 NA Rattus norvegicus 81 Htr2a ENSRNOG00000010063 ENSRNOT00000013408 2 1 1 99 15 56669373 56731589 ATCTGTAGGTATATCCATGCCA 58 56731649 56731667 AACAAAGTTGTCATCGGCA 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 1 1 2 60 15 28023067 28034120 TTGCACTTTCTAGGTGACGA 59 28034142 28034161 CAACAAGAGCAGAAGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atcay ENSRNOG00000020407 ENSRNOT00000041325 2 1 1 81 7 11373776 11373794 AAGTCCCTGATCATCGTCC 59 11373837 11374635 TGAACTTGACACTGATGAAGG 58 NA Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 1 1 1 140 16 20555536 20555554 TCTGAGTCCCAACTCAACC 59 20555657 20557348 CACCTCTGGACTGAGTATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362692 ENSRNOG00000042281 ENSRNOT00000064503 1 1 1 60 15 41508824 41508844 ACTAGAAGCAAGAAGAGTCCT 58 41508784 41508804 TCATCCTTTGTATCTTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027062 1 1 3 115 1 100600606 100600624 AATGACTTGGGTGTCCTGG 60 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr415 ENSRNOG00000049460 ENSRNOT00000070947 2 1 1 60 3 20893894 20893913 AATCTTCAAAGCCTTGTCCA 58 20893932 20893954 TCCATAGTACAGAGAAACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 2 2 2 80 1 214247654 214247674 CAACAACTCAGAAGAAAGGAC 57 214247715 214247964 TGCAGCTTCTTCATGTACTC 58 NA Rattus norvegicus 81 Olr420 ENSRNOG00000007965 ENSRNOT00000010473 1 1 1 60 3 21016692 21016715 CAGATGTTAGCTCTATGTCATGTC 59 21016733 21016752 TGAGGAAGGTATGTAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfap4 ENSRNOG00000005227 ENSRNOT00000006979 3 1 1 92 10 11215981 11216359 TTATCCAGGAGCTGAGTGG 59 11216415 11216433 TCTCATCCTCCCAGATGTC 58 NA Rattus norvegicus 81 Olr636 ENSRNOG00000051516 ENSRNOT00000085537 2 1 1 60 3 76843098 76843118 GGACATTTGCTATACCTCCTG 58 76843138 76843158 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3cb ENSRNOG00000054782 ENSRNOT00000082236 1 1 1 80 15 4228235 4229062 CTTCTCTGTTCTCAGGGAGG 59 4229105 4229123 ACTCCACTAGGCAACATCC 59 NA Rattus norvegicus 81 Rn60_18_0146.1 ENSRNOG00000029958 ENSRNOT00000051543 3 1 1 60 18 14731741 14731764 CTATTGTAAGAACAAGCCATACCC 60 14731783 14731801 CTTAGCATCAGGGACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571,ENSRNOT00000030056 2 2 2 80 7 34763573 34764066 TACAAGGATGGAGGAAGGAG 58 34763512 34763531 TCCATATCGTCATGAACCAC 58 NA Rattus norvegicus 81 Crtam ENSRNOG00000008153 ENSRNOT00000010792 3 1 1 81 8 45171208 45171226 AAGAAACAACCTCAGAGGC 58 45167716 45171165 ATCATTGAGACTGTACTCGTG 58 NA Rattus norvegicus 81 Ccdc141 ENSRNOG00000012580 ENSRNOT00000037015 3 1 1 80 3 63882970 63882988 TTGTTACTCCCTCAGTGCC 59 63878739 63882931 CTTCCAAACCATATAGTCGTTGAG 60 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534,ENSRNOT00000082332 1 2 2 84 10 8441225 8441243 ACCTCCGACAAATGTTTGG 58 8427562 8433897 AAACCAAATCCCTTCGAGC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090,ENSRNOT00000090218 3 2 2 80 4 152938154 152938732 ATGTCTTAGGTACCGATACCC 59 152938774 152938792 GTGTCATAGGACTGTGCTC 58 NA Rattus norvegicus 81 Cers4 ENSRNOG00000001072 ENSRNOT00000001418 2 1 1 80 12 4446768 4446786 GGCACCTCTATCCTCTACC 58 4445223 4445935 ATTCAGGGTCTGATGTGGG 59 NA Rattus norvegicus 81 Zfp827 ENSRNOG00000011697 ENSRNOT00000015929 3 1 1 80 19 32404050 32404068 CTTGCTGGTCATCTCTGTG 58 32403670 32404007 ACACATTCGAACCCTTTCTC 58 NA Rattus norvegicus 81 Rnase11 ENSRNOG00000039543 ENSRNOT00000060614 1 1 1 80 15 27974901 27975431 AAAGGAACCGACAAGACCA 59 27974839 27974858 GCTCTACAAGAAGCAGTCCA 60 NA InUTR Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 2 5 6 80 20 3305443 3306023 GATGATGGAAGACAAATCTGAC 57 3306063 3306082 GCACAATGGTCTTCATATCG 57 NA InUTR Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 1 1 1 60 3 61591085 61591103 GGTGTATTGTGCCAAGGAC 59 61591126 61591979 CCCTGGAAAGGATGATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 3 2 2 85 12 8116098 8116116 AGATCCAGGTACTCCAGCA 60 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Slc25a1 ENSRNOG00000038001 ENSRNOT00000000306 1 1 1 82 11 87205947 87205965 TACTGTACTGAAGCAGGGC 59 87206011 87206189 GGTTGTCTCCTTGGTACCA 59 NA Rattus norvegicus 81 Smpd3 ENSRNOG00000000257 ENSRNOT00000031977 2 1 1 90 19 38241069 38241088 GATCTGTTGAAGGGCAATGG 59 38240757 38241015 AATTCTTCCACCTCAGCCT 59 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 2 2 2 80 1 52379736 52380584 GGACATCGAGCTATTCCAC 58 52379674 52379693 GACCGATGGATCATGTAGAC 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442,ENSRNOT00000007287 1 2 2 80 6 49837021 49837210 CCTATTATGGCAATGACTCTGAC 59 49836963 49836981 TGAGTTTCTCCAGGAAGGC 59 NA Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000091212 1 1 2 87 3 173956695 173956713 AAGATGATGAGCAGCCCTG 60 173956762 173959480 GAGCCAGCATTTATACTGCTG 60 NA InUTR Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 2 2 2 80 1 214011918 214011936 GTTGTCATGGTGACTGGAG 58 214011980 214012287 CAGGATGAAGTACAAGCGT 58 NA Rattus norvegicus 81 Wisp3 ENSRNOG00000000597 ENSRNOT00000000735 1 1 1 89 20 44243666 44243684 AAGGAAGATCGATCCACCG 59 44241068 44243613 AGATTCCTGTAAGCTGGCA 59 NA Rattus norvegicus 81 Olr539 ENSRNOG00000009969 ENSRNOT00000013215 3 1 1 60 3 74631712 74631731 AACTCCCAAACTCCATACAC 58 74631671 74631690 GGCATCAACAAATGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bhlha15 ENSRNOG00000025164 ENSRNOT00000037251 1 1 1 60 12 12406436 12406454 GATCGAGACCCTCACACTG 60 12406394 12406414 AGTAAGTATGGTGGCTGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc1b ENSRNOG00000000991 ENSRNOT00000001315 1 1 1 84 12 11256204 11256222 CTGTCCTTAGCCTGGACTG 60 11255200 11256156 TAGGCAGAGAAGATCCTGC 59 NA Rattus norvegicus 81 Abcf3 ENSRNOG00000001710 ENSRNOT00000002327 1 1 1 80 11 84034086 84034106 GAGTAAACTGAAGATGCTGGA 58 84028255 84028350 TCAGGGAACTTCAACACCA 59 NA Rattus norvegicus 81 Tubd1 ENSRNOG00000053309 ENSRNOT00000081012 1 1 1 80 10 73872414 73872435 AAGCTACAAGATCAGTACTCCA 59 73872476 73874988 CTGAACAATAACCTCGCCC 59 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593,ENSRNOT00000005858 2 2 2 80 6 44262870 44263990 GTGAAGGATTCATGAAAGTCCTG 60 44264028 44264048 TTTGAGTGAAGCTGTCAATGG 59 NA Rattus norvegicus 81 RGD1561252 ENSRNOG00000009530 ENSRNOT00000012842 2 1 1 80 15 86166381 86166776 AGATGCACTTTGAATCAGGG 58 86166819 86166837 GTCTGGCTCTTTCTTCAGG 58 NA Rattus norvegicus 81 Olr1395 ENSRNOG00000046182 ENSRNOT00000048930 3 1 1 60 10 34693394 34693413 CTTCTTCTGTGAGATGCCTG 58 34693435 34693454 CTCTGTATCTCCTGTGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr681 ENSRNOG00000058748 ENSRNOT00000080527 2 1 1 60 3 77927566 77927585 TCTCCTATGGTGTCATCCTC 58 77927525 77927543 GCTTTCCTTCGTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glg1 ENSRNOG00000018668 ENSRNOT00000025570 3 1 1 80 19 43074652 43075375 GCTGGAGATGACAGAGGAC 60 43075413 43075437 GTAGAACAGTAGTTCTTGATGTCAC 60 NA Rattus norvegicus 81 Sept3 ENSRNOG00000007686 ENSRNOT00000010491 1 1 1 80 7 123517451 123518056 AATTCAAGCAGAGGGTTCG 58 123518098 123518118 CCAAATCCTCATCAAACTCCT 58 NA Rattus norvegicus 81 Dck ENSRNOG00000003296 ENSRNOT00000004440 2 1 1 80 14 20948656 20948675 ATTGGGAAGTGGTTCCTGAG 60 20944976 20948616 ATGTTGTCAACTCCTCAAACTC 59 NA Rattus norvegicus 81 Olr687 ENSRNOG00000054133 ENSRNOT00000089048 1 1 1 60 3 78016062 78016082 CATAACACCACTGCTCAATCC 59 78016022 78016046 GGCATTCTTCATATCCTTATTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr687 ENSRNOG00000054133 ENSRNOT00000089048 2 1 1 60 3 78016703 78016727 CTTCTTGATATTCTTGTCCTTCCTG 60 78016667 78016686 CATCTTGGGTGTTACAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddias ENSRNOG00000022521 ENSRNOT00000031974 1 1 1 80 1 157679734 157679752 AACTCAGAGCCTGTTGACC 60 157678518 157679692 TCTCCAAAGTTCGTTACTCCA 59 NA Rattus norvegicus 81 Rn60_4_1361.1 ENSRNOG00000059669 ENSRNOT00000082539 3 1 1 80 4 71245670 71245688 TCTCCTGGAAGGACAAAGC 59 71244664 71245626 ATCCGATCTGCACCTTCAG 60 NA Rattus norvegicus 81 Dohh ENSRNOG00000004259 ENSRNOT00000005640 2 1 1 81 7 11193751 11195810 TATAGTCGAAAGCAGGCAGG 60 11193689 11193709 CTACCTCCTGTTCTGTTACCA 59 NA InUTR Rattus norvegicus 81 Dohh ENSRNOG00000004259 ENSRNOT00000005640 3 1 1 82 7 11193751 11195809 ATAGTCGAAAGCAGGCAGG 60 11193687 11193708 CTCTACCTCCTGTTCTGTTACC 60 NA InUTR Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 2 1 1 86 1 221596602 221596770 CCCTTTAACGTGACAGTGC 59 221596819 221596838 AGACTCACAGTGTCCTACAC 59 NA DesignNoJunction Rattus norvegicus 81 Upf3b ENSRNOG00000039994 ENSRNOT00000032618 1 1 1 80 X 123717423 123718260 ACCAAAGAGGCCTGATGAC 60 123717361 123717379 ATCATGCGCTCCTGATCTC 60 NA Rattus norvegicus 81 LOC500034 ENSRNOG00000007224 ENSRNOT00000009752 3 1 1 98 4 40092914 40121955 TGAATGGTGTTGTAGTGTATGC 59 40092837 40092855 GTCTTAGTGGCGAGGACAG 60 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 1 1 2 144 2 166669336 166681789 GATGAAGAAATAGAGCCCAAGG 59 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc14 ENSRNOG00000021469 ENSRNOT00000033420 2 1 1 80 11 69298514 69301100 CGAAGAACAAGAGGACTCAG 58 69298453 69298471 CCACTCACTGCTGAAAGTC 59 NA Rattus norvegicus 81 Ska2 ENSRNOG00000025981 ENSRNOT00000036098 2 1 1 83 10 74414025 74421283 GAACTGATGTTCCAGAAAGC 57 74421327 74421347 GTGTGGGTGATTAATCTTGAC 57 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 1 2 2 80 19 55446663 55446682 GAAGAAGTGATTGACCACCG 59 55445848 55446625 GATACAGTTCAGGAGACTATTGAG 58 NA Rattus norvegicus 81 Wdr63 ENSRNOG00000014893 ENSRNOT00000020141 3 1 1 80 2 251956779 251956799 CAAGTTGAGAAAGACATTGGC 58 251951398 251956737 TCTTGGAAATGCCCATCTG 58 NA Rattus norvegicus 81 Ptpn5 ENSRNOG00000013981 ENSRNOT00000018860 2 1 1 80 1 103203709 103206863 ATCCTTCCCAATCCTCACAG 59 103203648 103203669 GTTGGCATTGATGTAGGAACTC 60 NA Rattus norvegicus 81 RGD1305347 ENSRNOG00000020259 ENSRNOT00000027432 2 1 1 124 5 137359670 137359863 CAAACTTAACCTTGTCCTTAGGG 59 137359947 137359965 GAGTATGGAGAGGACCACC 59 NA Rattus norvegicus 81 Nob1 ENSRNOG00000021890 ENSRNOT00000034386 1 1 1 80 19 38403657 38403676 GTGAGCTCTTCAATTCAGCA 59 38403716 38403922 TTGTAAGGCTTTAGACTTGGAG 58 NA Rattus norvegicus 81 Uhrf2 ENSRNOG00000011308 ENSRNOT00000015406 3 1 1 80 1 248284778 248285888 TCTGCGATTGCAGTATCCA 59 248285931 248285950 CTCGTCTGCTTCTTTGACTG 59 NA Rattus norvegicus 81 LOC100911888 ENSRNOG00000049467 ENSRNOT00000074022 3 1 1 60 4 1400387 1400407 CTTGTTTGTCCTGTTCTTGGT 59 1400429 1400447 CATCAGAGTCAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103692138 ENSRNOG00000057664 ENSRNOT00000088294 1 1 1 60 4 72332706 72332725 TACATCTCTGTGACTGTGCC 60 72332745 72332766 AGATGCTGTTACTCATAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2d5 ENSRNOG00000029128 ENSRNOT00000046024 1 1 1 80 7 123619782 123620906 ATGTACAAGCTTCAACACCG 59 123619721 123619740 CAGTCTGTTGACAATGACCA 58 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 3 2 2 80 4 177037410 177037429 GAGAAGAGTTATCCCGACCC 59 177033475 177037369 ATGTAGATGATCTTGCACTGC 59 NA Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 2 1 1 60 4 84862612 84870513 CAAGTCCTTCAGACCTTTGC 59 84870535 84870554 GTACTCTTCAAATGCGTCGT 59 NA DesignRelaxed Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 3 1 1 60 4 84862614 84870514 AGTCCTTCAGACCTTTGCT 59 84870537 84870556 CTGTACTCTTCAAATGCGTC 57 NA DesignRelaxed Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 1 1 1 80 15 3771912 3772055 CTCCCTCAGCAGATTCTCC 59 3771850 3771871 TACTGTATTGATGGCTGTTGAC 59 NA Rattus norvegicus 81 LOC100910370 ENSRNOG00000048523 ENSRNOT00000073724 2 1 1 80 7 117969528 117969695 GGTGTTGCCATGAATCCTG 59 117969739 117969757 TCTTCGGATAGTGGAAGGC 59 NA Rattus norvegicus 81 Uevld ENSRNOG00000013624 ENSRNOT00000045719 1 1 1 80 1 103010768 103014308 TAGGCAAGTACAAGTTCAGGG 60 103010708 103010726 TGGAGTATCTGAAGTGCGG 59 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000058296 1 3 5 98 18 79424931 79426828 AGAACATTGTGACACCTCG 58 79430398 79430416 TATAGTCGGAAGCTCTGCC 59 NA Rattus norvegicus 81 Zfp362 ENSRNOG00000043364 ENSRNOT00000007761 3 1 1 100 5 146969345 146973909 GAAAGGACCCTCTAGGATGG 59 146969123 146969142 TAATCAGGACCAGGTTGTCC 59 NA Rattus norvegicus 81 Slitrk6 ENSRNOG00000022337 ENSRNOT00000038433 3 1 1 90 15 95511360 95513750 TGTCTGCTTTACAGACACG 58 95511288 95511309 AGAGATAGACAAGCAAGAAGAG 57 NA InUTR Rattus norvegicus 81 RGD1560559 ENSRNOG00000025031 ENSRNOT00000031780 1 1 1 60 11 83676500 83676521 GCTAATGATAACCCACATTGAG 57 83676461 83676479 TAACAGAAGATGCACTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1437 ENSRNOG00000048938 ENSRNOT00000071556 1 1 1 60 10 44407544 44407562 GACACCTTCCTCTTCACAG 58 44407585 44407604 TGATGTTTCCTATGAGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift140 ENSRNOG00000016545 ENSRNOT00000022063 3 1 1 80 10 14453514 14454330 CTGCCAAGAAGTACCACGA 60 14454374 14454392 TCATCTTCTCGGCCATCTC 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 2 2 2 85 19 563181 563299 CATTTGGGAACAGGATGGA 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Tmem43 ENSRNOG00000007519 ENSRNOT00000010895 2 1 1 80 4 123123622 123124425 GAGTCCAATGAGTACACGG 58 123124717 123124736 AATTTCTGACCTCCACTCTG 57 NA Rattus norvegicus 81 Hspb6 ENSRNOG00000020922 ENSRNOT00000028401 1 1 1 80 1 89009123 89009143 GAGGAAATCTCTGTCAAGGTG 59 89009184 89009287 GAATCCATGTTCATCTGGGC 59 NA Rattus norvegicus 81 RGD1561143 ENSRNOG00000046184 ENSRNOT00000075641 1 1 1 108 12 21868952 21922395 CAAACTCATCATTCATGCTCTC 58 21868865 21868883 TGAAGGATTCCTCTGGTCC 58 NA Rattus norvegicus 81 Pih1d3 ENSRNOG00000054900 ENSRNOT00000087634 2 1 1 80 X 111402834 111402854 CATCTGGAATCCAGAAGAGGT 59 111402892 111410398 ATCTCATAATCTGGGACTTCTCG 60 NA Rattus norvegicus 81 Tmprss11bnl ENSRNOG00000002002 ENSRNOT00000002743 2 1 1 81 14 24108174 24108194 CATCTTACATCAGATGCTGGA 58 24107463 24108132 TTTAGTGATTTCCGTGAGCT 57 NA Rattus norvegicus 81 Rftn1 ENSRNOG00000011321 ENSRNOT00000015210 2 1 1 80 9 12853686 12881364 CGGAGTTCATTAAGAAGGTACAG 59 12881404 12881422 CAGAGGTCTGGTACTGAGG 59 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000088000 1 1 2 89 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126622249 126622267 TAATACGCAGAGGTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmprss6 ENSRNOG00000000184 ENSRNOT00000000200 3 1 1 80 7 119671728 119671946 CATCTCACGGTTCCCTCTC 60 119671666 119671685 TAGGTTGTACTTCTGCCTCC 59 NA Rattus norvegicus 81 Mllt4 ENSRNOG00000023753 ENSRNOT00000032667 3 1 1 80 1 53736185 53736315 GAAGCCCTCTTCTAACTCCT 59 53735687 53735707 AAGCACTCAAGTTCTCTTCTC 58 NA Rattus norvegicus 81 Pdia4 ENSRNOG00000006228 ENSRNOT00000008728 3 1 1 80 4 77481997 77483349 ACCCAGGAAGAAATTGTTGC 59 77481936 77481957 CAATGTAAGAGTGACTTCAGGT 58 NA Rattus norvegicus 81 Fam26f ENSRNOG00000037757 ENSRNOT00000057317 3 1 1 60 20 27682255 27682273 CAGGAGATCCTGAGTCAGC 59 27681608 27681626 CAGCTATCAGAACCCAACC 58 NA DesignNoJunction Rattus norvegicus 81 Zufsp ENSRNOG00000000398 ENSRNOT00000000448 2 1 1 80 20 32481185 32482855 CCTCACTGAAAGTCAAGTGC 59 32481124 32481142 ACTCGAATAAGCGAGGGTG 60 NA Rattus norvegicus 81 Lrrc57 ENSRNOG00000009143 ENSRNOT00000049756 2 1 1 80 3 112384030 112384050 GATTCGGAGTATACCTGACAC 58 112367783 112383992 GAGATCTGAGATATCTGGTTCTG 58 NA Rattus norvegicus 81 Olr421 ENSRNOG00000032321 ENSRNOT00000051973 2 1 1 60 3 21027476 21027496 TAGTCAGCCTTAACAGTCTCC 59 21027436 21027457 TTTCCACAGAAGGTTAAACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb6 ENSRNOG00000024786 ENSRNOT00000034927 2 1 1 80 3 9661338 9661873 GCAGACAAGAATGGGAAGAC 59 9661277 9661296 GATGTTGTCTGTGTTGTGGA 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000088819,ENSRNOT00000066004,ENSRNOT00000079954 2 3 7 60 2 186117163 186117186 TCTGAATAGAAGTGAGTCCTTGAG 60 186117126 186117144 CCCAAAGTCAGGAATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000088819,ENSRNOT00000066004,ENSRNOT00000079954 3 3 7 60 2 186117158 186117176 AGTGAGTCCTTGAGAGGGT 60 186117116 186117136 GAATGCAGTTCCCAAAGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mllt10 ENSRNOG00000022249 ENSRNOT00000034157 3 1 1 80 17 84936826 84936855 ATCCAGGAACAATGTCAGC 58 84939978 84939998 CAGAAGATGACTTTACACTGC 57 NA Rattus norvegicus 81 Plekhg6 ENSRNOG00000019528 ENSRNOT00000026441 1 1 1 80 4 157888172 157888385 GACAACATGATCGTAGCCG 59 157888110 157888130 TAAACTCTCCTGCTCTTCACC 60 NA Rattus norvegicus 81 Olr422 ENSRNOG00000032102 ENSRNOT00000044461 3 1 1 60 3 21060668 21060688 ACCCTTTAAGATACTCTGCCA 59 21060628 21060651 GAGGTCAATGTTATTCTCAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000082513,ENSRNOT00000002309 3 2 2 80 5 79239637 79239656 CATTAGACCTGGAGGGAACC 60 79238785 79239595 ATCTGACATCGTCCACAGAC 60 NA Rattus norvegicus 81 Prcc ENSRNOG00000012933 ENSRNOT00000017735 2 1 1 80 2 187236150 187240719 GATGAAGCATTTAAGCGGC 58 187236088 187236107 GTCATCACCTTTGATCTCCA 57 NA Rattus norvegicus 81 Pard6g ENSRNOG00000055157 ENSRNOT00000084621 3 1 1 81 18 76559934 76590090 GAAGTCAAGAGCAAGTTTGGG 60 76590128 76590151 GGTAGAAATCTTCAAACTTCCCAG 60 NA Rattus norvegicus 81 Tmco5b ENSRNOG00000000009 ENSRNOT00000000010 3 1 1 80 3 104763763 104763781 CCCAGAATGACTCTTCCCA 59 104763823 104764109 TGATGTTCTTCTCCATGTTGC 59 NA Rattus norvegicus 81 Dtwd1 ENSRNOG00000009593 ENSRNOT00000012966 2 1 1 80 3 118431041 118431061 TACTGCTACACATGCTATGTC 58 118431101 118434807 ATCAATCTTCAGTGGAAGCTG 58 NA Rattus norvegicus 81 Iqub ENSRNOG00000021729 ENSRNOT00000064983 2 1 1 80 4 51577630 51579984 CCTATACAGGAATCAGTGTTGG 58 51577571 51577592 CATTCATTTGAACGATTTCCCG 59 NA Rattus norvegicus 81 Amigo1 ENSRNOG00000045665 ENSRNOT00000074725 3 1 1 60 2 210979090 210979110 TCAACACAGCCTATACTACCC 59 210979129 210979150 TATATGAGGACCAGAACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dkk1 ENSRNOG00000048688 ENSRNOT00000074393 1 1 1 88 1 248896678 248896696 AAACCTTGGCAATGACCAC 59 248896485 248896626 CTTCTTGCCCTTTGGTGTG 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 1 2 2 80 3 54548464 54548485 AATCGCAACAATCCTTAAGGAG 59 54547290 54548427 GCTTTCAAATCCCTATGGATCTG 60 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000068251,ENSRNOT00000088955 3 2 2 124 1 82171916 82171936 CATAAGAACCTTACAGGGCTG 59 82172111 82172129 AAGAAGGTGCCATCCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Armc3 ENSRNOG00000016716 ENSRNOT00000075188 3 1 1 80 17 85939194 85942477 GAGACCAAGGAACTGAACG 58 85942520 85942539 CACCATTGTGTCCATATCCT 57 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081904 1 1 3 60 20 3344939 3344960 TCCTTCACTCTTACGAAGTTCC 60 3344981 3344999 CGGCAGAGAAATTCCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufv3-ps1 ENSRNOG00000027593 ENSRNOT00000030926 1 1 1 60 13 51297441 51297459 GTGTTCAAAGAGCCCACAC 59 51297399 51297417 GCAGGTTCTTGTAGGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo24 ENSRNOG00000024922 ENSRNOT00000038397 3 1 1 80 12 22145786 22145804 ATGAGCTTCAAGCAGATCG 58 22145845 22147267 GTATATCTTCCCTTCCTCTGTG 58 NA Rattus norvegicus 81 Lbhd1 ENSRNOG00000019701 ENSRNOT00000039991 2 1 1 95 1 225085671 225086653 TCAAGAAACGTGCATCCAG 59 225086712 225086730 TTTCTTTCTGGGCAAGTCG 58 NA Rattus norvegicus 81 Snx4 ENSRNOG00000001786 ENSRNOT00000002432 3 1 1 80 11 70703619 70705832 ATCACATGGACGTGTATGC 58 70703557 70703575 AGTACTCCTTCAGCTGGTC 58 NA Rattus norvegicus 81 AABR07072281.1 ENSRNOG00000052199 ENSRNOT00000071110 3 1 1 80 12 21968699 21969200 ATGCTGATCCAGAGAAGGT 58 21968637 21968656 CCATCTCAGAATTCACTCCC 58 NA Rattus norvegicus 81 Car1 ENSRNOG00000010698 ENSRNOT00000014267 1 1 1 93 2 88217825 88217843 TACAATCCTGCAACTGCCA 60 88217900 88220206 CACCTTTCAGCACTGACTG 59 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 2 1 1 64 4 10794822 10797179 AAAGTGTACATTGCCATGGG 59 10797203 10797224 CATCACTATCTTTCCGACTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392,ENSRNOT00000075504,ENSRNOT00000086915 1 3 3 76 12 22476003 22476021 GGCCCTCATCAATACTGGA 59 22475581 22475599 GAAAGTAGGAGCCCTCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Cdc45 ENSRNOG00000050071 ENSRNOT00000072027 2 1 1 80 11 86343459 86345603 GCAAATAAGTTTGGGATGAAGG 58 86345644 86345662 ACTGGCCAGGAATTTATGC 58 NA Rattus norvegicus 81 Cenpt ENSRNOG00000024178 ENSRNOT00000036702 3 1 1 80 19 37817944 37817962 CGTACTCTAAGAGGCAGGG 59 37817747 37817901 CCAATCTACCAACAGACCCA 60 NA Rattus norvegicus 81 Zfp846 ENSRNOG00000020356 ENSRNOT00000068461 2 1 1 80 8 21614399 21614418 TGAGGTCATCAAACCCAGTC 60 21614460 21614922 GGCATTTCCCATTCTTGGAG 59 NA Rattus norvegicus 81 Olr297 ENSRNOG00000046995 ENSRNOT00000040377 3 1 1 60 1 212941122 212941141 CTACAGTAGTGCCAACCTCC 60 212941081 212941102 CATGAGGGAAAGATTGACTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910838 ENSRNOG00000024641 ENSRNOT00000029041 2 1 1 88 12 22033370 22033388 ATCCACCATGATCGAGGAG 59 22033439 22034204 CCTGTGAAATCTCCATTCCG 59 NA Rattus norvegicus 81 Pcdhb15 ENSRNOG00000020054 ENSRNOT00000027164 2 1 1 60 18 30552185 30552205 ATAACAGTGCAGGTTTCTGAC 59 30552225 30552245 TGTAGGAGGTTTGGGTAAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd9 ENSRNOG00000019556 ENSRNOT00000026633 1 1 1 80 4 157978159 157978177 TCGATGAGGTCTTCCACAG 59 157977619 157978117 TCATACCGAAGATCATCACCA 59 NA Rattus norvegicus 81 Krtap12-2 ENSRNOG00000042956 ENSRNOT00000067800 1 1 1 103 20 11638333 11638381 TATGTGCCTGCTGTATGCA 60 11638248 11638266 AAAGAGGACTGGCATGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ube2g2 ENSRNOG00000001222 ENSRNOT00000001636 3 1 1 81 20 11704215 11704234 GTTTCCCACTTGACTACCCT 59 11702486 11704171 CCGTCAGGGTAGATGTTGG 60 NA Rattus norvegicus 81 Smim23 ENSRNOG00000027196 ENSRNOT00000031337 3 1 1 80 10 17718156 17718174 CAGTTGGGAAGTGTCAGGA 59 17717899 17718115 GTCTGATATTCAAAGTCCTGGG 59 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 3 2 2 123 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667143 51667162 CTTCCTCTGTAGACTCCTCC 58 NA Rattus norvegicus 81 Nmrk2 ENSRNOG00000042897 ENSRNOT00000066348 3 1 1 80 7 11385664 11385683 TCTTTGATGGTCACGTATGG 58 11385723 11385907 CTAAATAGACCACTTCCACTCG 58 NA Rattus norvegicus 81 Tbc1d16 ENSRNOG00000049758 ENSRNOT00000075171 3 1 1 80 10 108259751 108262146 ACTACCAGACGGACTATTTCC 59 108259691 108259709 GTTGTTGCTCGATGACGTC 60 NA Rattus norvegicus 81 Sfxn5 ENSRNOG00000037871 ENSRNOT00000057537 2 1 1 80 4 116995321 117008826 GATGTCAGAGATTGAAACCTCC 59 116995262 116995280 CCCTTGTTGTACACCACTG 58 NA Rattus norvegicus 81 MGC114492 ENSRNOG00000032629 ENSRNOT00000050147 2 1 1 125 X 139261346 139261697 CCATTCTTCAAGGCCTGTG 59 139261239 139261257 CAAACTGAGTGCTGTCCAG 59 NA InUTR Rattus norvegicus 81 Churc1 ENSRNOG00000007336 ENSRNOT00000009621 1 1 1 113 6 99823373 99823397 GGAGAAGAAATAGTTACCTATGACC 59 99825720 99831427 ACACAGCATGGTATATTCCTG 58 NA Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 3 1 1 162 8 116764640 116764658 TGACAGTTTCCTGAGCCAG 60 116763867 116763885 GCAGACAGAGTCCTCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Mn1 ENSRNOG00000027489 ENSRNOT00000029508 1 1 1 80 12 51214356 51246500 ACAAAGAAGTTCATGACCACC 59 51214296 51214314 AGTGGACAGTCAGACACTG 59 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 3 2 2 80 13 82362163 82362184 ATTGTCCTCATTGATCTACGTG 58 82362584 82362705 CTTTGGCAGCTACTAGCAG 58 NA Rattus norvegicus 81 LOC100912642 ENSRNOG00000030466 ENSRNOT00000089521 2 1 1 80 5 119479261 119480652 CAGAAATGACAAAGTACCCAGAC 60 119479203 119479221 AGAAGAGGTCCAGAGTGGT 60 NA Rattus norvegicus 81 Cyp2j4 ENSRNOG00000031004 ENSRNOT00000012977 1 1 1 80 5 119555160 119557281 AAGGAAATGTCAAAGTACCCAG 59 119555101 119555119 AAAGAAGAGGTCCAGGGTG 59 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 2 2 2 80 10 61707923 61707941 AGGATGAGCCAGAACTTCC 59 61706684 61707880 GTCCAAGATCTGGATGAGGG 60 NA Rattus norvegicus 81 Lrch4 ENSRNOG00000001402 ENSRNOT00000001899 3 1 1 80 12 22130729 22130747 CTTTCCGGATCTCAGAGCT 59 22130577 22130686 CCAAGTCTCCATCACCAGAG 60 NA Rattus norvegicus 81 Olr462 ENSRNOG00000009624 ENSRNOT00000012746 1 1 1 60 3 73226223 73226243 CCTCTCCACTATAGCACTCTC 59 73226183 73226201 AAGAGCCCAGCATTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564571 ENSRNOG00000042795 ENSRNOT00000001348 1 1 1 80 12 2782503 2782521 GGATAGGGCTGTCAGACTC 59 2781202 2782460 ACCAATAGTTCCTCCACTGC 60 NA Rattus norvegicus 81 Pan3 ENSRNOG00000000942 ENSRNOT00000044134 1 1 1 80 12 9233462 9233566 TTCCGAGCCTTCTCTTGTG 60 9233400 9233421 TTTGGGTCATTAAAGTGTCTGC 60 NA Rattus norvegicus 81 Lrch1 ENSRNOG00000009412 ENSRNOT00000047192 2 1 1 80 15 56808125 56817532 TCGTTCAGTGTTTCTAAGACCT 60 56808066 56808084 ATCTGCTCCATCTTCCTCC 59 NA Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 3 1 1 89 7 7534403 7534424 TGGACTCTCACTTAAAGACTCC 59 7534329 7534351 CAAATCTGGGAATGGAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391,ENSRNOT00000009241 1 2 2 80 13 48439135 48439153 GATCGAATTCAGCGAGTCC 59 48439194 48439746 CCAAAGTATTCCATATCCAGGT 58 NA Rattus norvegicus 81 AABR07003433.1 ENSRNOG00000037133 ENSRNOT00000056014 3 1 1 80 1 109665968 109665990 CAGGAATCCTACAGAAATGATGG 59 109666030 109666073 ACAACCCATTGTGGTTCCT 60 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 3 1 1 85 2 62029779 62029797 AGAGTTCTAGAGCACTGGC 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Dock2 ENSRNOG00000006932 ENSRNOT00000059810 3 1 1 80 10 19514476 19516187 TAGTGAAGTTCCTCCAGGAC 59 19514415 19514436 GGATGTCATACTCGTTACTCTG 58 NA Rattus norvegicus 81 Bfsp2 ENSRNOG00000010899 ENSRNOT00000032376 2 1 1 80 8 111917093 111935705 CAAGCTAAGCAGCAGACAG 59 111917031 111917050 TAACTCTACACTGAGGGCAG 59 NA Rattus norvegicus 81 Sec61a2 ENSRNOG00000023278 ENSRNOT00000039621 2 1 1 80 17 76362968 76370774 CTTAGTATGCTGTCAGATTCCAC 59 76370808 76370832 AGAATAACTCTCATCCAGTAGAAGG 60 NA Rattus norvegicus 81 Pcdhb2 ENSRNOG00000039476 ENSRNOT00000060497 1 1 1 60 18 30377863 30377883 CACTCTATCTGGTCATTGCCT 60 30377905 30377923 AGCAGTAGAGACAGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr865 ENSRNOG00000058382 ENSRNOT00000090022 1 1 1 60 5 137812219 137812240 CAGCCACTTACATCTACATGAG 59 137812180 137812199 ATCTGCTTGTCTCGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr157 ENSRNOG00000017528 ENSRNOT00000055536 3 1 1 145 5 167110297 167120933 TTTCACCTCATCAGCTGGG 60 167121042 167121060 AGTAGCATCCACAGGACAC 59 NA Rattus norvegicus 81 Tp53tg5 ENSRNOG00000026215 ENSRNOT00000029206 2 1 1 80 3 160921725 160922036 AGTAAAGTGGCTTCTAAGATGC 59 160921666 160921685 GTTCCGCTCAATTACTTTGC 58 NA Rattus norvegicus 81 RGD1311783 ENSRNOG00000020076 ENSRNOT00000027196 3 1 1 80 1 266461685 266462427 TTCAGTACCAGCAAGAAGC 58 266463098 266463119 ACTTCAGTAAATGACTCAGCTG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 1 1 1 80 14 23456231 23456250 GAAGCTACTCAGAAGTTCCC 58 23456293 23457307 AGGACTGTCTCCATCTGAC 58 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 2 1 1 81 1 72751512 72751530 AAGTGCAGAAGCTCAAGGT 60 72751574 72751695 CAAAGGGTTCCTTTGTGCTC 60 NA Rattus norvegicus 81 AABR07060190.1 ENSRNOG00000030979 ENSRNOT00000051232 2 1 1 60 4 61502470 61502488 ACTCGAAGAGCCAAGAGTC 59 61502428 61502450 CTCTTTCTTCTGATCTTTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.3 ENSRNOG00000051020 ENSRNOT00000030922 2 1 1 60 13 79272994 79273012 AGCTGAAATTTCGCTGCAC 60 79272952 79272970 TGAACCCTTAGGTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.3 ENSRNOG00000051020 ENSRNOT00000030922 3 1 1 60 13 79273124 79273142 GCCACCAAGTATCTGAAGG 58 79273082 79273100 TTATACCGCCAAATGGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb1 ENSRNOG00000030904 ENSRNOT00000043381 2 1 1 80 2 105070029 105070049 ACTCATACTCACAGATGATGC 58 105061798 105069987 CCAGGGCATTCAATTCCTC 59 NA Rattus norvegicus 81 Sst ENSRNOG00000001837 ENSRNOT00000002519 3 1 1 67 11 80358408 80358426 CAGACTCCGTCAGTTTCTG 58 80358457 80359096 AGTACTTGGCCAGTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 AABR07017838.1 ENSRNOG00000048203 ENSRNOT00000072127 3 1 1 105 15 31719899 31720035 CTCCTCATCCTCACAAGGG 59 31720104 31720122 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Tnfsf4 ENSRNOG00000002968 ENSRNOT00000003969 2 1 1 82 13 79270255 79270275 CTATGTCTGCCTGCAATTCTC 59 79290221 79292357 CCTCACATCCGGTAACTGG 60 NA Rattus norvegicus 81 Ncl ENSRNOG00000018273 ENSRNOT00000024712 2 1 1 80 9 93371740 93371761 CTGTTTCACTCTACTACACTGG 58 93371222 93371700 TTGATTCACCACTCCAAGTG 58 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392,ENSRNOT00000079836 3 2 2 80 12 12776175 12776193 TGAGACTCCACCACAACAG 59 12774007 12776134 TATCTTGACAAGGATCCTGACG 60 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 1 2 2 80 12 15980291 15980309 TGGACCTCTGTCCTATCTG 58 15977435 15980247 TGTGCAGTCTCTTGTACCT 58 NA Rattus norvegicus 81 Mvd ENSRNOG00000013376 ENSRNOT00000018145 3 1 1 85 19 55262792 55263147 TTATCCTTGTGGTGAGTGCA 59 55262726 55262744 CTTGAGCAGGGTACTGGTC 60 NA Rattus norvegicus 81 AABR07055527.1 ENSRNOG00000039997 ENSRNOT00000061482 3 1 1 97 7 4951956 4951977 CCCAATTAAAGTAACACTGGCA 59 4952034 4952147 CTAACAGTTGACCACAGGTG 59 NA Rattus norvegicus 81 Slc39a1 ENSRNOG00000059463 ENSRNOT00000089016 1 1 1 80 2 189611019 189613359 CATGTGACGCTTCAGTTCC 59 189613403 189613421 TGTGATCTGCTCCATCACC 60 NA Rattus norvegicus 81 Hacd4 ENSRNOG00000005772 ENSRNOT00000033651 2 1 1 80 5 106742063 106746204 TATGGTAAGGTACACTTACAGC 57 106742004 106742023 CATAGTGTTTGACTGAGCCA 58 NA Rattus norvegicus 81 LOC100912431 ENSRNOG00000049332 ENSRNOT00000072248 2 1 1 60 3 73509467 73509487 TTCTACTGTGATGACATGCCT 59 73509427 73509449 GCTGTTTGTAGTGAGTATCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Metrn ENSRNOG00000019692 ENSRNOT00000026676 2 1 1 114 10 15165762 15165781 CAACGTGCAGAAATGTCTCC 60 15164786 15164888 CATGGATCACAAAGTCACTGG 59 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 3 3 3 80 1 273946274 273946293 CAATCTATTCAACCCGTCCC 59 273946336 273946831 ACTTCATGGAAGACACAGC 58 NA Rattus norvegicus 81 Slc15a3 ENSRNOG00000021644 ENSRNOT00000029443 1 1 1 80 1 226903589 226907909 TCTTCCAGGAACTCTGAAGG 59 226907948 226907970 CATATCTTCTTGTGGAGAAGGTC 59 NA Rattus norvegicus 81 Ube2d1 ENSRNOG00000000611 ENSRNOT00000000750 3 1 1 80 20 18572215 18572322 GAGATGACTTGTTCCATTGGC 60 18574758 18574777 CAGTGAGGAAGAAGACTCCA 59 NA Rattus norvegicus 81 Nt5m ENSRNOG00000003332 ENSRNOT00000004448 2 1 1 80 10 46228861 46241104 TCCCTATGAGAAGTATGCCTG 59 46241145 46241164 GTCTTGTCTCTGGTCAACAC 59 NA Rattus norvegicus 81 Thegl ENSRNOG00000002085 ENSRNOT00000002860 1 1 1 87 14 33394481 33394499 CTATTCCGATCCCTCTCCC 58 33392551 33394433 AGTTTGAATAGTCTTTGGAGGG 58 NA Rattus norvegicus 81 C8b ENSRNOG00000007639 ENSRNOT00000010100 2 1 1 80 5 124326552 124333390 CATCATCAAGCTCAAGGCTG 59 124333432 124333451 TTCTGTTTCACTGTGCTGGA 60 NA Rattus norvegicus 81 C8b ENSRNOG00000007639 ENSRNOT00000010100 3 1 1 80 5 124326553 124333390 ATCATCAAGCTCAAGGCTG 58 124333434 124333452 GTTCTGTTTCACTGTGCTG 57 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 1 2 2 80 12 17501962 17501981 ACTGTGGGTCAAGGATATGG 59 17500914 17501922 AGGAAGTCAGTCTTAGCATCAG 60 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925,ENSRNOT00000026009,ENSRNOT00000078789 1 3 3 80 1 143174182 143174204 CCCTATCTAGAAGATTCTCTGTG 58 143172849 143174143 CTTGAAGCAGACCTGATCTC 58 NA Rattus norvegicus 81 Chmp6 ENSRNOG00000004014 ENSRNOT00000005379 2 1 1 80 10 109075906 109075926 ATCGAGATGAAGGTGATGGAG 60 109075966 109076551 CTCCTCTATGGACATCACCTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000087295 2 1 12 86 20 3363757 3364248 CATTCCTGGGTACAGGTCG 60 3364298 3364316 CTTGGAGCAACTGTATGCG 59 NA Rattus norvegicus 81 AABR07017783.1 ENSRNOG00000047444 ENSRNOT00000070880 1 1 1 81 15 31032797 31032914 GATAAACTTTCTCCTGAGAGTTGC 60 31032951 31032972 AGAGTCTTCTTCAGAGACAGTG 59 NA Rattus norvegicus 81 Sft2d1 ENSRNOG00000024140 ENSRNOT00000049831 1 1 1 80 1 53003986 53005079 TATTATGCTGTTGTGCCTGG 58 53002366 53002384 ATGCAGAAGAGTAAGGCCA 59 NA Rattus norvegicus 81 Prkrip1 ENSRNOG00000001426 ENSRNOT00000001937 3 1 1 100 12 23516307 23518971 GATGTCATGGGTTCCAGTG 58 23519035 23519053 ATGGCATCCATGTAGTCCT 58 NA Rattus norvegicus 81 Klhdc7a ENSRNOG00000018867 ENSRNOT00000025517 1 1 1 60 5 158438294 158438313 AGTGCTTCCCATACCTTCTC 59 158438253 158438272 TCTGTATCACGTTCTCCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh11 ENSRNOG00000013481 ENSRNOT00000018535 3 1 1 80 19 2506759 2506779 ACATTAATGACAACCCTCCAG 58 2506820 2509692 CTGAAGTTCCCACATTGGAC 59 NA Rattus norvegicus 81 Rsph6a ENSRNOG00000061526 ENSRNOT00000090515 1 1 1 85 1 79960261 79962052 AACCTCAGCCTGTATGAGC 60 79962101 79962119 GACTCCAGGATGGACAAGG 60 NA Rattus norvegicus 81 AABR07067896.1 ENSRNOG00000046343 ENSRNOT00000072983 2 1 1 80 9 71845942 71848858 CCAGTGGGAGAAAGTGAGAG 60 71845881 71845901 GATAAGATCAGTGCTTCTCGC 59 NA Rattus norvegicus 81 Ndufb11 ENSRNOG00000008329 ENSRNOT00000011183 3 1 1 86 X 1787687 1787705 GAAAGCGGCAAAGAGAACC 60 1787755 1789015 GAAAGTCTGGGTTCTTCGC 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365,ENSRNOT00000086473 1 2 2 80 4 83832919 83833831 CACAAGGATACTTAAGTCCAGAG 58 83833871 83833889 TATGCTGGATGACTTGCTG 58 NA Rattus norvegicus 81 Cdr2l ENSRNOG00000025815 ENSRNOT00000035865 1 1 1 80 10 103942372 103942390 AAACAAGGAGCTGGAGGAG 59 103942433 103942712 TTGGTCAGGTACTCGATCTC 59 NA Rattus norvegicus 81 Olr1399 ENSRNOG00000049535 ENSRNOT00000050554 1 1 1 95 10 34756769 34756787 AACATCAAGTCCATGGCTG 58 34756846 34772405 TGTGTAGATAGCTGAGCCA 58 NA Rattus norvegicus 81 Slc9b2 ENSRNOG00000023404 ENSRNOT00000031425 1 1 1 80 2 240496694 240500153 GAGTGATAACTAATGGTACCATGG 59 240500191 240500210 CTCCAGGAAGACATTCAGGG 60 NA Rattus norvegicus 81 Med7 ENSRNOG00000007053 ENSRNOT00000009238 1 1 1 80 10 31535054 31535461 TGGTCTTAGGTTCTTGATTGTC 58 31535502 31535520 TGATGTACTGCATTGGAGG 57 NA InUTR Rattus norvegicus 81 Rbm12 ENSRNOG00000019723 ENSRNOT00000047246 1 1 1 60 3 151643901 151643922 CTACCTACTGGAATGAATGGCT 60 151643862 151643885 CAGGGTTCAGATTATTGTTCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 1 2 2 80 10 47721206 47721224 CTGTTACCTCCTTCCTGCT 59 47721044 47721163 AAGTCATCTTCTGTGTTGCC 59 NA Rattus norvegicus 81 Glrx5 ENSRNOG00000004206 ENSRNOT00000005781 2 1 1 96 6 128751101 128759062 GAGGCAAGGTATTAAAGACTATTCC 60 128759115 128759134 CATCTGCAGAAGGATGTCAC 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 2 1 1 100 7 74327029 74327048 GAGAAACCCAAACCTGTAGG 58 74326945 74326966 ATATGACGAATGGACGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451,ENSRNOT00000041418,ENSRNOT00000056457 2 3 3 82 9 111078784 111078804 GGAACCTGTACAGATAAAGCC 59 111078848 111080128 AATCCAACACCTTTCGGGA 59 NA Rattus norvegicus 81 Tet2 ENSRNOG00000023579 ENSRNOT00000046775 2 1 1 80 2 238735562 238736360 TGCTAAATGGGTGTATCGG 57 238735500 238735518 TCACATGTATGCTTGGCTC 58 NA Rattus norvegicus 81 Trappc3l ENSRNOG00000031290 ENSRNOT00000047000 3 1 1 92 20 27660743 27660761 CATAGAAGAGCTGCCTGCT 60 27660815 27664291 GCTAAATGAACCATCTCCAGG 59 NA Rattus norvegicus 81 Fbxo43 ENSRNOG00000010459 ENSRNOT00000014333 3 1 1 87 7 74925574 74925685 ATTTGAAGGTTGCCAGGAC 58 74925505 74925524 TTATGCGGCTGATACTTAGC 58 NA Rattus norvegicus 81 Fam3c ENSRNOG00000060349 ENSRNOT00000090583 1 1 1 80 4 49414490 49422722 TTAGGAAGTCTATTTGCCCGA 59 49413503 49413523 TGAGATCCCACATTTGTACCT 59 NA Rattus norvegicus 81 LOC102556119 ENSRNOG00000029678 ENSRNOT00000004902 3 1 1 70 10 36419712 36419730 CAAGGAGAAGAACCCTGGA 59 36414317 36419681 AGACTGCTATTACATCCAAGAG 58 NA DesignRelaxed Rattus norvegicus 81 Zdhhc8 ENSRNOG00000021891 ENSRNOT00000048063 2 1 1 80 11 86909719 86909737 CAACATGCCACTTCTACCG 59 86909781 86909889 AGTGGTGGTCAAAGTCCTC 59 NA Rattus norvegicus 81 AABR07017623.1 ENSRNOG00000046052 ENSRNOT00000075484 3 1 1 84 15 29345549 29345741 GATTTGCTGGGTGAGAGGA 59 29345483 29345502 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Gabrg3 ENSRNOG00000014862 ENSRNOT00000019971 3 1 1 80 1 112253489 112253507 GCGGCTCTATCAGTTTGAC 59 112202478 112253448 ATGACAACATAATCACCTGCAG 59 NA Rattus norvegicus 81 Araf ENSRNOG00000010838 ENSRNOT00000039911 2 1 1 80 X 1388085 1389112 GACTCATCAAAGGAAGAAAGACAG 60 1388028 1388046 CCTCCACAATGAGCTCCTC 60 NA Rattus norvegicus 81 Brk1 ENSRNOG00000010184 ENSRNOT00000013600 2 1 1 81 4 145559277 145559295 GAACCGGGAGTACATTGAG 58 145559337 145573277 ACGACAAGACATATCGAAAGAG 58 NA Rattus norvegicus 81 Nrde2 ENSRNOG00000004004 ENSRNOT00000005369 3 1 1 80 6 124157828 124157850 GGACAGATAAGAAACCAGATCCT 60 124156046 124157789 CCTTCCTCTTGTACCTTGCT 60 NA Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000022499 1 1 2 80 1 107295022 107295040 GCCAATTTCCTCTCCTGGT 60 107295084 107305643 CTTATGCAGAACCAGGCCT 60 NA Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 2 1 1 87 5 122508477 122512581 AGAGAACAACGTTTCTGTCTG 59 122512630 122512648 TTCCATCCGGACTTGAAGG 59 NA Rattus norvegicus 81 Malt1 ENSRNOG00000017181 ENSRNOT00000068418 2 1 1 80 18 61156465 61156484 AAGTATAGTCCACAAGCCAC 57 61156523 61158581 GGATCAATATCTAGGTCAAGAGG 58 NA Rattus norvegicus 81 B3galt6 ENSRNOG00000019979 ENSRNOT00000027060 1 1 1 60 5 173424820 173424838 CCAGTAGATGTGCAACGAG 58 173424778 173424797 AGCCTCGAGATTTGTACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grina ENSRNOG00000029941 ENSRNOT00000059599 2 1 1 81 7 117306888 117306996 ATCTTCTCCATGCAGACCC 59 117307041 117307059 CGAAGATGAAGAGCACCAC 59 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000064965,ENSRNOT00000076099 2 2 3 85 9 94432049 94453581 TTTGAACAGGTTTCTCCACAC 59 94453626 94453646 GCCCAAAGTTTAGTGTCTGTG 60 NA InUTR Rattus norvegicus 81 Aass ENSRNOG00000039494 ENSRNOT00000060530 2 1 1 80 4 50167017 50168109 TTGTCATCAGCTTGTTGCC 59 50166955 50166976 CAGTGACCATATTAACCTTGCT 59 NA Rattus norvegicus 81 Timm8a2 ENSRNOG00000013835 ENSRNOT00000018486 3 1 1 106 15 108453378 108453396 TTTGAATCGACTGGAGCAC 58 108453466 108456290 AAGGAACAGGGATCTTCCT 58 NA InUTR Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000060179,ENSRNOT00000080114 1 3 3 80 14 22107566 22108806 CCAAATCTGGAACAACTTGG 57 22108849 22108867 CATCCCGCTTACACTTCTC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 2 2 2 80 1 227498800 227503795 GTTCTTGGGACTATCCAGC 58 227498738 227498756 GTTGGAGTAGGAAGCTGAC 58 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 2 3 3 80 4 147361934 147372231 GTCTCACAATGCCATCAGG 59 147372273 147372293 TCGATATCACTGGAGATCTCC 58 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 1 2 3 85 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Mkrn2 ENSRNOG00000009176 ENSRNOT00000013146 1 1 1 83 4 147525391 147527107 ACGAGAAGATGTGTATGTCG 58 147527153 147527171 TACTGCACACTTTGTCCTG 58 NA Rattus norvegicus 81 Mkrn2 ENSRNOG00000009176 ENSRNOT00000013146 3 1 1 84 4 147525391 147527108 ACGAGAAGATGTGTATGTCGA 59 147527153 147527172 ATACTGCACACTTTGTCCTG 58 NA Rattus norvegicus 81 Olr1582 ENSRNOG00000046512 ENSRNOT00000040596 3 1 1 60 13 91712383 91712407 CTCTAAGGTATTCGGTTATTATGGG 59 91712424 91712443 AGTGACCCAGATGCTAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina3m ENSRNOG00000009921 ENSRNOT00000013175 1 1 1 80 6 127811657 127813435 CTCTTTAGAGGCAAATGGAAGG 59 127811598 127811616 AGACCTCTTCTCATCCACG 59 NA Rattus norvegicus 81 Olr505 ENSRNOG00000053395 ENSRNOT00000079710 2 1 1 60 3 73779809 73779829 GAATCAAGGCTACAAACACCC 60 73779769 73779789 CAAGGTCAGTAGTAGCAAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037,ENSRNOT00000006773,ENSRNOT00000041473 3 4 4 80 7 51465093 51465114 CACACCTTTAGATATTGCAGAG 57 51453394 51465053 TCTATATCAACACCTTGCCG 58 NA Rattus norvegicus 81 Dmc1 ENSRNOG00000013807 ENSRNOT00000018526 3 1 1 80 7 120836042 120836060 TCGGGATTCCAAGATGAGG 59 120833801 120835192 AATATCAGCCATGTTGATTCCG 59 NA Rattus norvegicus 81 Prmt5 ENSRNOG00000012046 ENSRNOT00000016302 1 1 1 80 15 33159279 33159974 CACTTCCTGAAAGATGATGGTG 59 33159220 33159242 GTACAACTTCGAGGAAGAAATGG 60 NA Rattus norvegicus 81 AABR07002938.1 ENSRNOG00000037415 ENSRNOT00000056615 2 1 1 91 1 89871256 89871274 AAGGCCTTGACTTGGAGAC 60 89871180 89871205 CCTTCTCTTGAGATGTTCATCTC 59 NA Rattus norvegicus 81 Lrtomt ENSRNOG00000023434 ENSRNOT00000039564 3 1 1 81 1 166987834 166987854 ATCCTCACAACTCTAGACCAC 59 166987080 166987797 GCATCAGAATCTGACCTTTAATAGG 60 NA Rattus norvegicus 81 Rn60_13_0880.2 ENSRNOG00000051363 ENSRNOT00000076743 3 1 1 60 13 83034266 83034287 CATGATCTGAAAGATGTGAGGC 60 83034227 83034245 GAGCAACTTCATGGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 2 3 3 80 2 208585458 208586208 TTCTGAGGTGTTTAGAAGTCG 58 208586247 208586268 GTAAGAAGGGAGTGATTGAGTG 59 NA Rattus norvegicus 81 Mafg ENSRNOG00000036697 ENSRNOT00000054970 3 1 1 113 10 109807522 109807621 CCTTAAAGGTGAAGCGGGA 60 109807427 109807445 CTTCCTTGGATAGGCCTCG 60 NA Rattus norvegicus 81 Slc6a1 ENSRNOG00000006527 ENSRNOT00000009705 3 1 1 80 4 146283552 146284008 AATGTGTACAGGGACTCCA 58 146284051 146284070 GATGGAGAAGATGACGAAGC 59 NA Rattus norvegicus 81 Zfp276 ENSRNOG00000016631 ENSRNOT00000022324 2 1 1 80 19 56058243 56059293 GTGACCTTTCTGAGGGAGAC 60 56059336 56059354 CAAAGGACTCATCCGAGGA 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 2 2 2 80 10 109976655 109976993 CAAAGAATGATTCTGTTGGCTC 58 109976596 109976616 CTTGTCAATCTCTGGGAAGAC 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 1 1 1 60 3 61686372 61686703 AAAGCAAACTGTCCGAATATGG 60 61686724 61686742 CTGAAATTCGTGCGGATGG 60 NA DesignNoJunction Rattus norvegicus 81 Lsm5 ENSRNOG00000042126 ENSRNOT00000065625 3 1 1 111 4 87017931 87017951 CTTGTGGACAAGTGTATAGGA 57 87017592 87017861 CATCTTCCAACACCATATTGAC 58 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 3 1 1 80 13 82456372 82456391 CTGGGATCTCGAAATGTGGA 60 82456431 82457543 AAGTGATGTTACACCTTTGCAG 60 NA Rattus norvegicus 81 Cd177 ENSRNOG00000022669 ENSRNOT00000051619 1 1 1 80 1 82967097 82972848 CTCGGTCAAATTCTCTGACCT 60 82967037 82967055 TCCACTCGACAGCTTTCTC 60 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 2 2 2 80 15 57166039 57169058 GTTCGTATAGTACAAACAGGCTC 59 57165981 57165999 CACTAAAGCGCTTTCCTCG 59 NA Rattus norvegicus 81 Ceacam20 ENSRNOG00000019260 ENSRNOT00000026060 1 1 1 80 1 80897281 80897299 AACCCAAAGGAGAGGACAG 59 80897767 80899614 GTGGCTTCTTCTCATAGAAGTG 59 NA Rattus norvegicus 81 Prss30 ENSRNOG00000033266 ENSRNOT00000034340 3 1 1 89 10 13350779 13350929 ATATTGCATTCAGGTGCTGG 59 13350709 13350727 TTTCTCTGTCCTCAGGCTG 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 1 2 2 81 5 133763559 133763577 AACAAGACCATGGATGGGA 59 133762288 133763517 GACATCGGTCAATACAGATCTC 59 NA Rattus norvegicus 81 Unc93a ENSRNOG00000047027 ENSRNOT00000073581 2 1 1 80 1 53580951 53582279 GAGTATACCAAGTCTTATGTGACC 59 53580894 53580912 AGTCATAGCCGAGAAGCAG 59 NA Rattus norvegicus 81 Cux1 ENSRNOG00000001424 ENSRNOT00000059486 3 1 1 80 12 23233147 23233166 CAAGATGAGAGCGAACAGTC 59 23233209 23310155 GCGTAAATCCTCTGGAGTG 58 NA Rattus norvegicus 81 Gtf2f1 ENSRNOG00000047134 ENSRNOT00000073683 3 1 1 81 9 10036979 10036997 TACAATTTCACACCGCTGG 59 10037042 10038479 GGACCTTGTTCCTCCTCTC 59 NA Rattus norvegicus 81 Slc9a7 ENSRNOG00000004150 ENSRNOT00000005623 1 1 1 80 X 2612531 2612549 CACTAACCACCACTCTCCC 59 2612590 2614268 GCTCTTGGTTATCATACACCTG 59 NA Rattus norvegicus 81 Accsl ENSRNOG00000042533 ENSRNOT00000068585 1 1 1 80 3 82766410 82766429 GGCTACCACCATAGTGTCTC 60 82764572 82766372 CACCTTATTGATCCACTCTTTGTC 60 NA Rattus norvegicus 81 Casc3 ENSRNOG00000009716 ENSRNOT00000013204 2 1 1 80 10 86740010 86740236 ATGATCCACTGCAGTTCCA 59 86740280 86740298 GTACAATCATGCCCTGTGG 59 NA Rattus norvegicus 81 Tmem151a ENSRNOG00000049951 ENSRNOT00000075365 2 1 1 60 1 220375196 220375214 ACAGGTCTACCATGAGAGG 58 220375154 220375173 TGCACTGTAGTCAAACTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fubp1 ENSRNOG00000043370 ENSRNOT00000066199 1 1 1 80 2 257435224 257435353 TACAAAGTTCAGCAAGCCA 58 257435396 257435415 ATACTCATTCCGCACTTCTC 58 NA Rattus norvegicus 81 RGD1565767 ENSRNOG00000023181 ENSRNOT00000032528 2 1 1 60 3 57191711 57191731 TTATCCTCATTGATCCATCCC 57 57191671 57191689 GCGATCCATTGAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftmt ENSRNOG00000014988 ENSRNOT00000020109 2 1 1 60 18 47294697 47294715 GTATTTCCTTCGCCAGTCC 58 47294737 47294757 CTGCAGTCTCATAAGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559459 ENSRNOG00000042714 ENSRNOT00000065079 3 1 1 80 14 22942539 22945443 TCCACAGAAGGTTCTTTGGA 59 22945485 22945504 GGGATCCATTTGTACAGACG 59 NA Rattus norvegicus 81 Prpf19 ENSRNOG00000020897 ENSRNOT00000028373 1 1 1 80 1 226952902 226954814 TTCATCCTTCTCAGGAATTGGT 60 226954855 226954873 CACAAGAAGTGTTCGGGAC 59 NA Rattus norvegicus 81 Mcm9 ENSRNOG00000003281 ENSRNOT00000004499 1 1 1 80 20 34922490 34925173 GCCAGGATATCAGGTTTGC 59 34922428 34922446 TAAGAAGTGTCCCACGTCC 59 NA Rattus norvegicus 81 LOC100361079 ENSRNOG00000002340 ENSRNOT00000003180 3 1 1 60 1 89258624 89258726 CAAGTTTATCAAGAAGAGGGTGG 60 89258586 89258604 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Nap1l1 ENSRNOG00000003890 ENSRNOT00000005286 3 1 1 80 7 54233181 54233199 TGGGACAGTTCGTACTGTG 59 54233242 54233382 TTCTCAGGAACTTCAGGAGG 59 NA Rattus norvegicus 81 Cenpa ENSRNOG00000032178 ENSRNOT00000012512 3 1 1 92 6 27075655 27075674 GAGATTCCTGTGGCTTAAGG 58 27075187 27075600 ATTTCTCTTACCACGAGGC 57 NA Rattus norvegicus 81 AABR07051533.1 ENSRNOG00000038274 ENSRNOT00000045492 3 1 1 60 3 16495787 16495807 CTTCATATTCCTGCTGCTCTG 59 16496013 16496031 AGACTGGGTCATCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pde4a ENSRNOG00000020828 ENSRNOT00000061100 2 1 1 80 8 22223156 22223174 AAGCTTGAACACCAACGTC 59 22223215 22225222 CTCAAGTTCTCCAGTTCTTGTG 59 NA Rattus norvegicus 81 Car13 ENSRNOG00000021323 ENSRNOT00000038546 2 1 1 81 2 88284215 88290539 GTATCAGCTCTCAACAGTTGG 59 88284154 88284172 TTGCTTAACAGGAAAGCCG 59 NA Rattus norvegicus 81 Lingo3 ENSRNOG00000032569 ENSRNOT00000046059 2 1 1 60 7 11746553 11746571 CTTCTGCTTTCTGCTGCTC 59 11746592 11746613 GAAGTTATTCTTGTGCTGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrnp40 ENSRNOG00000012219 ENSRNOT00000016325 2 1 1 80 5 148585934 148585953 GAACTCCTGTTATCCAGCCA 60 148585994 148594293 ATGTCCCAAAGCTTAACTGTG 59 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000031641 ENSRNOT00000042285 2 1 1 60 5 164923400 164923419 TTATGCCCGAGATGAAACTG 58 164923439 164923460 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000084722 3 1 3 253 3 147480811 147480831 GAATAGTGACCAGAAAGGCTC 59 147477881 147477899 TAGCCTTATCAGCCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1564552 ENSRNOG00000045917 ENSRNOT00000050803 2 1 1 60 17 84704798 84704819 GCAAGTTAAAGGCAAGATTCTG 59 84704759 84704778 GTGTTCGATGTGCTCAATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000088089,ENSRNOT00000008886 2 3 3 80 6 126140936 126140954 ATGGTCACCTTCATCACGG 60 126140994 126146549 GTATCCAATAATAGTCACCAGCC 59 NA Rattus norvegicus 81 Ist1 ENSRNOG00000015144 ENSRNOT00000020365 3 1 1 83 19 41987402 41989609 CAGATTGTTGGACCCAAGC 59 41989656 41989674 CTCTGGCAGTACAAAGGTG 58 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050808 ENSRNOT00000073056 2 1 1 61 15 29728629 29728744 GGGATAAACTTTCTCCTGAGAG 58 29728589 29728607 ACATGAGCATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Kcnh3 ENSRNOG00000057315 ENSRNOT00000086611 3 1 1 82 7 140896964 140897077 CAAGGTCAATGTGTACGTTGG 60 140897120 140897139 GGTCCAGTCTTGGTAGTAGG 59 NA Rattus norvegicus 81 Eda ENSRNOG00000032208 ENSRNOT00000076977 1 1 1 60 X 69730769 69730787 CAGGAGAAGATCCACTCCC 59 69730810 70131329 AAATTCAGGAGTGCCATCTG 58 NA DesignRelaxed Rattus norvegicus 81 Zfp951 ENSRNOG00000037421 ENSRNOT00000048419 1 1 1 80 14 6358614 6358632 TGGATCCTTCCCAGAAGAG 58 6358355 6358571 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 AABR07068042.1 ENSRNOG00000037894 ENSRNOT00000057584 3 1 1 199 9 78969039 78969058 TATATGGGACAGTCCCTTCC 58 78969221 78972831 TTACATCATTCTGGCGGGA 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000049182 ENSRNOT00000072418 2 1 1 91 15 30802335 30802448 TTTCTTCTGAGAGTTGCCCA 59 30802502 30802520 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Gpr37 ENSRNOG00000002524 ENSRNOT00000003593 3 1 1 80 4 51842548 51842568 GTCATCTTCCATGAGTTGACC 59 51823501 51842508 AGAAGCTACCTCGATATAGGG 58 NA Rattus norvegicus 81 Myo7a ENSRNOG00000013641 ENSRNOT00000019053 1 1 1 80 1 163006072 163006811 AAATCGCAGATAAGGTCATCAG 59 163006013 163006033 TCTTTATCCAGTCTGTCAGGT 58 NA Rattus norvegicus 81 Spata18 ENSRNOG00000002120 ENSRNOT00000002899 3 1 1 80 14 37091433 37091451 ACTTTGAGACCGCAGTCTC 60 37089349 37091391 GGATCACATCATTGACACTGC 60 NA Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 1 2 2 80 3 71792419 71798390 CTTAATATGGCTCTCATCGCAG 59 71792360 71792382 CATGATCTTGTTCCTAGTGACTC 59 NA Rattus norvegicus 81 Znrf2 ENSRNOG00000049057 ENSRNOT00000072271 2 1 1 80 4 85075744 85075762 TTGAAGAATTGCAGCAGGG 59 85075805 85082230 ACCATTCATCTATGCAGCCT 59 NA Rattus norvegicus 81 LOC688321 ENSRNOG00000045751 ENSRNOT00000071293 2 1 1 80 10 109952002 109952025 GAGTCTACAAAGGAGATCTTTGAC 59 109952143 109952256 CTTGGCTACTATCTGGGATACC 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669,ENSRNOT00000087957 3 2 4 80 1 64011621 64011715 ACCAGAAGAGGTCAAACCC 59 64011987 64012008 CATCCTTAGTTTCCATGTCCTC 59 NA Rattus norvegicus 81 LOC680875 ENSRNOG00000023828 ENSRNOT00000014191 2 1 1 80 7 117185879 117186161 GAGCTTCTCACTAGTGACC 57 117185817 117185836 TGACTCAGTCAGCTTTACAC 58 NA Rattus norvegicus 81 Cfap54 ENSRNOG00000029837 ENSRNOT00000005492 3 1 1 80 7 33858684 33859044 CATTGCTACGTCAAGGACTC 59 33858623 33858641 CAGGTCCATTGTGTAGCTG 58 NA Rattus norvegicus 81 Apol9a ENSRNOG00000023410 ENSRNOT00000031951 1 1 1 60 7 118928781 118928799 GTATCAAAGGCCAAGTTGC 57 118928276 118928294 GATCCCTCAGTGCTTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Apol9a ENSRNOG00000023410 ENSRNOT00000031951 2 1 1 60 7 118928780 118928799 GTATCAAAGGCCAAGTTGCC 60 118928276 118928294 GATCCCTCAGTGCTTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1310495 ENSRNOG00000000589 ENSRNOT00000000720 2 1 1 80 20 45122562 45123857 ACCCACTCCCTTTCTTTCC 59 45122500 45122521 TAGAACATAGGTTCCGATGGAC 60 NA Rattus norvegicus 81 LOC687104 ENSRNOG00000050455 ENSRNOT00000008475 2 1 1 60 3 78271291 78271312 AGACACTTATGTTATTGGCCTC 58 78271252 78271271 GATGATGACACAAATTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mif ENSRNOG00000006589 ENSRNOT00000008608 1 1 1 72 20 13732611 13732629 CAACTACAGCAAGCTGCTG 60 13732665 13732805 GTTGATGTAGACCCGGTCC 60 NA DesignRelaxed Rattus norvegicus 81 LOC687110 ENSRNOG00000031645 ENSRNOT00000042026 3 1 1 60 3 78279087 78279108 CAATGTACTTCTTCCTTGCCTC 59 78279048 78279069 GAGAAGGCAGTGGAATAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptprcap ENSRNOG00000021724 ENSRNOT00000029607 1 1 1 117 1 219404000 219405342 CATCGGATCAATGGCTCTG 59 219405423 219405441 GATGGTGACCACATTGGAG 58 NA InUTR Rattus norvegicus 81 Thoc5 ENSRNOG00000008456 ENSRNOT00000011281 3 1 1 80 14 85143979 85143997 CTTGCCAGGAGCTACAGAG 60 85144040 85144933 CTATTTCAATGGCCACGTCC 59 NA Rattus norvegicus 81 Olr1664 ENSRNOG00000052917 ENSRNOT00000089221 1 1 1 60 17 45801993 45802012 TCTTTGCTTCAATCAACCCT 58 45802034 45802053 TGTCTACCTTGTTGTTTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1608 ENSRNOG00000012522 ENSRNOT00000016693 2 1 1 60 15 27001680 27001699 GCATCATTGTGGTCATTGTC 58 27001639 27001659 AGCAGGAAGTACATAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Styxl1 ENSRNOG00000023366 ENSRNOT00000046343 1 1 1 80 12 23968600 23974929 GACGACTCTGAACTCTTACC 58 23974972 23974990 GATATAGACAGGTTGGCGG 58 NA Rattus norvegicus 81 Olr324 ENSRNOG00000021070 ENSRNOT00000028604 1 1 1 60 1 228537225 228537243 ATTGTCCCTGTCCTGAACC 59 228537183 228537201 TGGCTGACTTCATCTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl22 ENSRNOG00000017684 ENSRNOT00000023810 2 1 1 88 8 72204347 72204365 ATGATTTCCTCCTGCAGGT 59 72202049 72202067 TAAGCAGTCATCCGTGACG 60 NA DesignNoJunction Rattus norvegicus 81 AC123280.1 ENSRNOG00000033141 ENSRNOT00000049690 2 1 1 91 15 61875343 61875380 GGATCATTTCAGGCATCCC 58 61875270 61875289 TAGAGCTACACTGTTTCCGG 59 NA Rattus norvegicus 81 Fignl1 ENSRNOG00000004440 ENSRNOT00000005857 3 1 1 104 14 91901803 91901824 GGTCATAATCAGCAGAGTTCTC 59 91898557 91898575 ATTCTTCTGCCAGTCATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adprm ENSRNOG00000003397 ENSRNOT00000004560 1 1 1 80 10 53585531 53586724 TCCTCAAGGACTTTCTGAGC 60 53585470 53585489 ACTTCGTTCAACCAGTTCAG 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 3 1 3 81 6 131912783 131912804 CGATGAAGATGACCATCTACTG 59 131838871 131912742 GGAAGGCTCATCTTTACCTG 58 NA Rattus norvegicus 81 Ahi1 ENSRNOG00000013969 ENSRNOT00000019076 3 1 1 80 1 16530054 16530073 AAGGGTGAAACAGTCATTCG 59 16530115 16561951 ATGCTGATAAATGCCGTCTG 59 NA Rattus norvegicus 81 Olr694 ENSRNOG00000006415 ENSRNOT00000008396 3 1 1 60 3 78112617 78112636 CATTGTCCTCACCATCTCCT 59 78112576 78112597 AGTGAGAAAGAAGTACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215,ENSRNOT00000084173,ENSRNOT00000064174 3 3 3 81 4 161734324 161734710 CACAGGAGACAGTAGGGAG 59 161734261 161734280 AACGTTCTTGTTGTGGATCC 59 NA Rattus norvegicus 81 Atp10d ENSRNOG00000002312 ENSRNOT00000003146 3 1 1 80 14 38514271 38515963 TGTAGCAAAGAAGGTCATGAG 58 38514211 38514229 TTGTCGATGCTGGTTTCTG 59 NA Rattus norvegicus 81 Olr838 ENSRNOG00000050363 ENSRNOT00000051234 1 1 1 60 5 59292892 59292910 TTGTCTTGCTGGGATTGTC 58 59292850 59292868 AGGATGAGCACGAAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910429 ENSRNOG00000004588 ENSRNOT00000006050 3 1 1 81 7 129749872 129781987 GGAGGGCATAGGTAATACAG 57 129782031 129782049 GCAGACTTCTTCCTCTTCC 58 NA InUTR Rattus norvegicus 81 Olr851 ENSRNOG00000052071 ENSRNOT00000082758 3 1 1 60 5 69577661 69577680 CAAAGCCCAAGGTTAAAGAC 57 69577620 69577638 ATGAGAGCCTCCATCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aanat ENSRNOG00000011182 ENSRNOT00000015221 2 1 1 116 10 105569875 105569893 CCTCAGAGTTCCTAGGCTG 59 105569973 105570861 CTGAGATAAAGGCTTCGCG 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211,ENSRNOT00000068199 3 2 2 80 3 63424305 63431723 TGTCACAGGCACTTAACCA 59 63431764 63431785 CGTGATCACAAATGGTAGACTC 59 NA Rattus norvegicus 81 AABR07050399.1 ENSRNOG00000055770 ENSRNOT00000072167 3 1 1 60 5 163773906 163773924 GGGTTCAGATGAGGACAGG 60 163773946 163773966 ATTAACTCATCCTTCTGGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 1 1 1 80 8 116868967 116868985 TCGCATCGTCTACCTACAG 59 116868442 116868924 TTGGTGTACCAGTCGTACAG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 3 2 4 80 9 111210939 111210958 AGAACCCTCACTCTAGTGGA 59 111208982 111210898 CTGACAAGCATATACCCACTG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000032542 ENSRNOT00000046690 2 1 1 60 3 147490551 147490570 AAATACGGGCTGAACATGTG 59 147490510 147490528 TGAAGCCTATGTCCTTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612,ENSRNOT00000081992 1 2 2 80 9 98645449 98645468 CTAGCCAAGATAAGCTGGAG 58 98645511 98645930 GCCGAGGTATTCTTCTGAG 57 NA Rattus norvegicus 81 Nsrp1 ENSRNOG00000022502 ENSRNOT00000030749 3 1 1 85 10 63128567 63130452 CTTTCGTGAAGCCAGAACTG 60 63130500 63130518 TCTGCTGTGGTCTGTTCTC 59 NA Rattus norvegicus 81 Olr336 ENSRNOG00000021078 ENSRNOT00000028617 2 1 1 60 1 229417208 229417226 TACCTGTGCCTCTCATCTG 59 229417248 229417268 ATAGACAAACAGTCCTGATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909473 ENSRNOG00000054359 ENSRNOT00000077211 2 1 1 60 4 87828293 87828311 GTGGTCATATACTGGGTGG 57 87828331 87828353 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1645 ENSRNOG00000039434 ENSRNOT00000060427 1 1 1 60 15 28934777 28934798 CACTCCATATCTTTCACCTCAC 59 28934738 28934757 CAATCTCATCAGGACCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf165 ENSRNOG00000048824 ENSRNOT00000075580 2 1 1 80 18 73839953 73839973 ATCAGCATTACCTAGCAACTC 58 73837705 73839914 GAATTTCATGGACAACCATCTG 58 NA Rattus norvegicus 81 Usp11 ENSRNOG00000009049 ENSRNOT00000051956 2 1 1 80 X 1689277 1689582 AGAACCCTTGGTATTGCTC 57 1689215 1689234 GAACTTCAGGTAGCATCCAG 58 NA Rattus norvegicus 81 Wdr26 ENSRNOG00000003723 ENSRNOT00000005059 2 1 1 80 13 99509679 99509697 GTCCAGATGACAGCTACCT 59 99506753 99509637 ATTCTCCCGTTTGTACATTCC 58 NA Rattus norvegicus 81 Olr217 ENSRNOG00000050569 ENSRNOT00000041974 2 1 1 60 1 170915185 170915204 AACCCACTCATTTACAGCCT 59 170915144 170915164 CCAGAACCCTTATTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r134 ENSRNOG00000027510 ENSRNOT00000030442 2 1 1 60 3 37147804 37147822 GCCTGGGAAGTGATAACCT 59 37147845 37147864 TGCTTAGTGTCAGAATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbscr27 ENSRNOG00000046700 ENSRNOT00000074851 3 1 1 86 12 24772557 24774485 ACCCTAAAGGGACCTTTGAC 59 24772490 24772508 TTAGGAGCTCAGGTATGGC 59 NA Rattus norvegicus 81 LOC100912759 ENSRNOG00000049264 ENSRNOT00000071062 3 1 1 60 13 100189321 100189339 AGATTGAGATGACACTGGC 57 100189279 100189298 GCATACAGCAGAAGAATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrt2 ENSRNOG00000016301 ENSRNOT00000067372 1 1 1 152 1 243664363 243665790 CCACAGAGGACAAGAAGGG 60 243668007 243668026 TCCCTCCTAGGTAAGTCTCG 60 NA Rattus norvegicus 81 Rab5c ENSRNOG00000018568 ENSRNOT00000030344 2 1 1 80 10 88623554 88623573 AACAGTTTGCTGTTCATGGA 58 88623059 88623511 AAGCTTCTTAGCTATCGCC 57 NA Rattus norvegicus 81 Olr224 ENSRNOG00000029766 ENSRNOT00000047239 1 1 1 60 1 171044559 171044577 CACACCCATGCTTAATCCC 59 171044517 171044536 GATTGCATCCTTGACTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016863.1 ENSRNOG00000057795 ENSRNOT00000074803 3 1 1 113 15 2532621 2535250 CTAAAGAGGATGGACTCGCT 59 2535326 2535344 CAGCAATCGCTGTAGTGAG 59 NA Rattus norvegicus 81 LOC100362808 ENSRNOG00000047490 ENSRNOT00000050604 2 1 1 83 1 75194601 75194788 ATATTGCAGTTCTGTCTTGGTG 59 75194832 75194850 ATACTGAGGCCTGAAGACG 59 NA Rattus norvegicus 81 Hrasls5 ENSRNOG00000023528 ENSRNOT00000032123 3 1 1 93 1 222907820 222908314 CAACCTACAAATGACTCAGCG 60 222908369 222908387 TTCGGGCCTGTTCTAATCC 60 NA Rattus norvegicus 81 Btg2 ENSRNOG00000003300 ENSRNOT00000004408 3 1 1 87 13 50915484 50916746 ACTGACCGATCATTACAAACAC 59 50915418 50915436 CATCTTGTGGTTGATGCGG 60 NA Rattus norvegicus 81 Tsx ENSRNOG00000002925 ENSRNOT00000003922 2 1 1 80 X 74274457 74275075 TCTGATCTGGATGACGCTG 59 74276332 74276352 TTGAAGAATATCTTGCAGGCG 59 NA Rattus norvegicus 81 Rpa2 ENSRNOG00000013005 ENSRNOT00000017549 1 1 1 80 5 150957429 150959062 AGAAGAAATCAAGAGCCCGA 59 150959104 150959123 CCTCATCAGTCAGAGTAGCA 59 NA Rattus norvegicus 81 Impact ENSRNOG00000045844 ENSRNOT00000073771 2 1 1 80 18 4338620 4340326 CATTGACCAGGTGAAGAAGG 59 4340369 4340387 TAGGCGTAGATGTTGTGGG 59 NA Rattus norvegicus 81 LOC654482 ENSRNOG00000043410 ENSRNOT00000068290 1 1 1 80 8 6223072 6223093 AGTATGAAGATGTGCTAAAGCC 59 6220624 6223032 GAGGATGTTTCCGAACACTC 59 NA Rattus norvegicus 81 Grxcr1 ENSRNOG00000038891 ENSRNOT00000059439 1 1 1 86 14 41722348 41785643 TGTTACAGCAACCATCAGC 59 41722280 41722298 TCTCAAAGGTCGTCCTCAC 59 NA Rattus norvegicus 81 Mir146a ENSRNOG00000035466 ENSRNOT00000053589 1 1 1 60 10 28962516 28962536 GGTTATAGCAATGTCAGACCT 58 28962476 28962495 ATGACGATAGAGCTATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir146a ENSRNOG00000035466 ENSRNOT00000053589 2 1 1 60 10 28962516 28962536 GGTTATAGCAATGTCAGACCT 58 28962476 28962496 ATGACGATAGAGCTATCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 2 3 3 80 10 88410810 88413058 ATGAACTATGCACAGATCCG 58 88410749 88410767 CTTCTTGATGAGCTTCCGT 58 NA Rattus norvegicus 81 Recql5 ENSRNOG00000005107 ENSRNOT00000007246 2 1 1 80 10 104444429 104444447 ACTTGTTCAAGGGCTTTGC 59 104444260 104444385 CCTCTTCCTTCACACTCCT 58 NA Rattus norvegicus 81 Olr6 ENSRNOG00000045783 ENSRNOT00000072404 1 1 1 60 1 70481120 70481139 CAAGCCCATGTACTTCTTCC 59 70481160 70481180 GACAGACACATAGCACATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd4 ENSRNOG00000028470 ENSRNOT00000034886 3 1 1 80 1 162969461 162969593 TAGAATAGCTGCAGACACCA 59 162969636 162969654 TAACGCCGATGATAATCGC 58 NA Rattus norvegicus 81 Vezt ENSRNOG00000006514 ENSRNOT00000030015 1 1 1 80 7 34922674 34925523 AGTCCTACAGAAACAAGGCA 59 34922613 34922637 TTCTTACTGTACTGAGAGGAAAGAG 60 NA Rattus norvegicus 81 Tmod2 ENSRNOG00000010447 ENSRNOT00000014124 2 1 1 80 8 82509614 82509633 TACCAGTTTACCAAGCAAGG 58 82507154 82509572 TCTCTTCTTGCGAACTAGGT 59 NA Rattus norvegicus 81 Gpr25 ENSRNOG00000008603 ENSRNOT00000011368 3 1 1 73 13 53137221 53137240 AGTCCTGGAATTCTAGCTGG 59 53137167 53137185 CTCTACTTGGTCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000079126 2 1 5 60 20 4046574 4046593 TAGAACTTGTTGTAGGCCAG 57 4046615 4046634 CACTCAGGAGGTAGAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000079126 3 1 5 60 20 4046575 4046593 AGAACTTGTTGTAGGCCAG 57 4046617 4046635 GCACTCAGGAGGTAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr485 ENSRNOG00000009747 ENSRNOT00000012912 3 1 1 60 3 73542908 73542932 CACTTAGACTCGAAACTACATACTC 59 73542872 73542893 CCGTGATTGATAAATGTCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb7 ENSRNOG00000039454 ENSRNOT00000060461 2 1 1 60 18 30901704 30901722 ACTCAAGTCAGAGCATGGG 59 30901746 30901764 TGATGGAGTAGGAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msmp ENSRNOG00000043023 ENSRNOT00000068105 3 1 1 90 5 59085329 59085562 TACTTCCAAGCTCAAGCTCC 60 59085258 59085277 AGGTACAATGGAAGCAGTCC 60 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 3 2 2 86 4 52162193 52162211 CATAGGAGAAAGTGCTGCG 59 52162261 52164310 TTTGTACAGTTCTCCGCAG 58 NA Rattus norvegicus 81 St3gal2 ENSRNOG00000017932 ENSRNOT00000024248 1 1 1 80 19 43277994 43280086 GGACAGATCCGATTCACCT 59 43277527 43277545 GGCTGGGTTGTAAATCTGG 59 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467,ENSRNOT00000029615 1 2 2 80 15 4183286 4183304 TTCAAAGACTCCAACAGCA 57 4183346 4187313 ACGTTTGATGAATCCTGAGAG 58 NA Rattus norvegicus 81 Fbxo15 ENSRNOG00000038225 ENSRNOT00000058199 1 1 1 80 18 81874503 81874525 GAGAACACCTACCTCTTATTGGA 59 81874562 81882438 CAAAGCAACTCTCAATAAAGCC 59 NA Rattus norvegicus 81 Dag1 ENSRNOG00000019400 ENSRNOT00000026327 2 1 1 97 8 116985261 116992793 ATTATCAAGGTGTCTGCAGC 58 116985183 116985201 TCAGTGTCAAGAGGAAGGC 59 NA Rattus norvegicus 81 Efna2 ENSRNOG00000016203 ENSRNOT00000021709 3 1 1 97 7 12383056 12383266 TCCAACCAATGAGACCCTG 59 12382977 12382996 CTGTAGTGAGGAAGAGGTGG 59 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 1 2 2 80 4 57038557 57039561 CTATGTGCTATGCCAAGCC 59 57039605 57039623 GGCCGATTCTTGATCTCAC 58 NA Rattus norvegicus 81 Sorcs1 ENSRNOG00000011313 ENSRNOT00000015979 1 1 1 80 1 270057053 270057336 AGTTGCATCAGGTAACATAGG 58 270056993 270057011 CAAGTGTTCCCTGCATCTG 59 NA Rattus norvegicus 81 Tarbp2 ENSRNOG00000042355 ENSRNOT00000064661 3 1 1 91 7 144125351 144125691 CATTGAGATTGGCAGTGGG 59 144125746 144125764 CATCCAGAGGTACCGTGTG 60 NA Rattus norvegicus 81 Olr1630 ENSRNOG00000012515 ENSRNOT00000016683 1 1 1 60 15 26939420 26939441 GAGCCAGTTATCATTTACTGTC 57 26939381 26939401 AAAGCTGTCTACTTCATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1615 ENSRNOG00000049936 ENSRNOT00000046583 2 1 1 60 15 27243591 27243610 CTTCTCCTTGGGTTCTACAG 57 27243632 27243651 AAGGTAACGATCAAATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 2 1 1 60 20 3791655 3791675 CTGTGATCATTGTAGCTGTGG 59 3791438 3791634 TTTCCACCTGTGTTTCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000086096 1 1 2 115 10 110138605 110144867 CGTAACAGGTGAAACCAGC 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Olr24 ENSRNOG00000050054 ENSRNOT00000042931 1 1 1 60 1 150100528 150100549 TCTGTGTTGTGATCTCTTACTG 58 150100489 150100510 TTAGTGGTAGGAATCTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Def8 ENSRNOG00000000264 ENSRNOT00000000281 1 1 1 81 19 56250098 56250116 AACAAACCTGCGACAAGTG 59 56250161 56251221 CAGCGGTAATAACACCCTG 58 NA Rattus norvegicus 81 March6 ENSRNOG00000011066 ENSRNOT00000028561 1 1 1 80 2 84564961 84564982 AGTTGTGGTAGAAATTGGAGTG 59 84563752 84564923 GTAGCATCAAACATTTCCAGAG 58 NA Rattus norvegicus 81 Abhd3 ENSRNOG00000029370 ENSRNOT00000041878 1 1 1 80 18 1894940 1894958 GAAGTCGGTGGGAATTCCA 60 1893206 1894898 GTTTCTATTGGGATAGCGTGG 59 NA Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 3 1 1 80 8 50490115 50490136 CTCAATGATGAGGTTCTCTTGG 59 50490175 50490431 GGCATCCGATCTTAATGACTG 59 NA Rattus norvegicus 81 Cebpd ENSRNOG00000050869 ENSRNOT00000074586 2 1 1 71 11 89008726 89008744 GAACGAGAAGCTGCATCAG 59 89008779 89008797 TCTTTGAAGAACTGCCGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab27a ENSRNOG00000052499 ENSRNOT00000083957 1 1 1 80 8 79761642 79765744 CGAAACTGGATAAGCCAGC 59 79765786 79765806 TAGGTCACTCTTATTTCCGCA 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 1 1 1 60 20 3791764 3791784 CCCTTCATTTCCTGTACCTG 58 3791719 3791737 GGTTTCCATGTTGGAGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Ssbp3 ENSRNOG00000007920 ENSRNOT00000011408 2 1 1 80 5 126640466 126646466 GGTCTAACTTTCCAATGGGTC 59 126646508 126646526 ATCCATTCATGTGGTGTGG 58 NA Rattus norvegicus 81 Odf4 ENSRNOG00000004225 ENSRNOT00000005667 2 1 1 80 10 55511499 55511798 CTGAGCTTCTGTGAAGTCAC 59 55511438 55511457 CTTCTTCAGCTCGTAGATCC 58 NA Rattus norvegicus 81 LOC688130 ENSRNOG00000036830 ENSRNOT00000055274 2 1 1 90 7 145060817 145060835 TACAATGCCTGTCATGTGG 58 145060593 145060763 TAAGTGGCTCATCATCGAC 57 NA Rattus norvegicus 81 Wdr19 ENSRNOG00000002932 ENSRNOT00000003991 2 1 1 80 14 44722058 44722077 GCTTCTACCTCATGTCTCCT 59 44720889 44722015 GCTTCTTTGTACCTTCCGT 58 NA Rattus norvegicus 81 LOC102553180 ENSRNOG00000048674 ENSRNOT00000027402 3 1 1 60 18 29952067 29952088 ATAAAGGAACTCCCTCCATGTC 60 29952106 29952127 TTTACATCCAGGACTTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553012 ENSRNOG00000042322 ENSRNOT00000067185 2 1 1 60 18 30832071 30832091 ACAATGCTCCTGTATTCACTC 58 30832112 30832131 ACAGGCAAATTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 1 2 2 80 1 32328464 32329759 TGCTTCCTCCTGTATGTGG 59 32328402 32328421 CCAGTCTGGGAAGATGTAGG 59 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 3 2 2 80 11 80771223 80772105 CTACAAAGTGCTAAAGGATAACGAG 60 80772141 80772161 ATCTTGTTACTCCATGCACCA 60 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 2 2 2 80 7 45372137 45372157 ACATTGCCTCTGTTAATCGTG 59 45372193 45379108 GTCTTCTAGAAACTTATCTATGCCG 59 NA Rattus norvegicus 81 Eif3d ENSRNOG00000005804 ENSRNOT00000029753 1 1 1 80 7 119197060 119197791 GGTACACAAACAAGTATTCCTCTC 60 119197003 119197021 GGAAGCTCGTCTCATCCTC 60 NA Rattus norvegicus 81 Olr70 ENSRNOG00000015673 ENSRNOT00000020981 3 1 1 60 1 168160787 168160805 CTCCTTTACAACAGCAGCC 59 168160745 168160764 CCAGATCTTGAAAGCCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp566 ENSRNOG00000048138 ENSRNOT00000074582 3 1 1 80 1 88416577 88420428 CTTTCAATGGTCCTGGAGTC 58 88416516 88416535 CTGCGCCATTTCTATCTCAC 59 NA Rattus norvegicus 81 Zar1 ENSRNOG00000026150 ENSRNOT00000030610 2 1 1 80 14 37761181 37761200 CTATCACTGCAAAGACTGCA 58 37761036 37761138 TTGAAGTACACCTTGCTGG 58 NA Rattus norvegicus 81 Gsx2 ENSRNOG00000002266 ENSRNOT00000003080 1 1 1 187 14 35652159 35652177 TCACCATCACCACCATCAG 59 35651314 35652008 TATCTGAGCCTCCCATGGT 60 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000061249 3 1 2 95 17 6688532 6688550 GTTTGCTGACTACAGGCTG 59 6688606 6689006 AGCATTTCTCCTTCTAGAAGCT 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 2 2 2 99 8 117065067 117065515 CTGTTCAAGCACCAGATGC 60 117065578 117065596 CCTCCACGGAGAAAGACAG 60 NA Rattus norvegicus 81 Gng4 ENSRNOG00000047080 ENSRNOT00000070807 1 1 1 74 17 90290083 90290101 AGCTGAAGATGGAAGCCTG 60 90269524 90269542 CTTCACAGTAGGCCAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07018165.1 ENSRNOG00000013433 ENSRNOT00000017939 3 1 1 60 15 44442715 44442735 ACACAGTCAACAGAACAACAG 59 44442675 44442695 ATGTCCCTTAGAATGGAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pank4 ENSRNOG00000014044 ENSRNOT00000019028 2 1 1 81 5 172375382 172375401 TCTTCCTGAGACATGAAGGC 60 172375440 172375729 CTGTACTGGTTAGGATTATCTTGC 59 NA Rattus norvegicus 81 Chd1l ENSRNOG00000017669 ENSRNOT00000043937 3 1 1 80 2 199739728 199741089 CTATATGGATTACAGAGGGTACAG 58 199739671 199739689 TTCTTAATGGCCAGGTGTC 57 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 2 1 1 101 4 98728719 98731713 AGAGTCACACCACAAGAGC 60 98728636 98728655 ATACCCATCCTCCAGTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 3 2 2 85 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934974 29934994 AACATCGTTATCACCATCACG 59 NA Rattus norvegicus 81 Mir350 ENSRNOG00000047684 ENSRNOT00000071079 3 1 1 64 13 43827514 43827532 TAAAGTGCACGTGCTTTGG 59 43827560 43827578 AGGGTGAAAGTGTATGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000088962 3 1 2 90 1 267495953 267495971 GAAACCAAGTGCATGGGAG 59 267496025 267507115 GTGTCCCACTCATAGGCTG 60 NA Rattus norvegicus 81 Vom1r8 ENSRNOG00000051757 ENSRNOT00000080437 3 1 1 60 1 60117809 60117829 TTTAAGGAACATGGCAGTTGG 59 60117848 60117869 TCCCAGAATACCAAGTGTACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11b ENSRNOG00000021216 ENSRNOT00000028811 1 1 1 80 2 198763932 198770181 TTCCTTCAGGTACTATCTCTTCTC 59 198770220 198770238 TCTTGTTCCATCAACAGGC 58 NA Rattus norvegicus 81 Pex11b ENSRNOG00000021216 ENSRNOT00000028811 3 1 1 81 2 198763932 198770181 TTCCTTCAGGTACTATCTCTTCTC 59 198770220 198770239 CTCTTGTTCCATCAACAGGC 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173,ENSRNOT00000011851 1 2 2 80 4 57387257 57391441 GGTTGCTTCGGAAACTCAG 59 57391483 57391503 GTGAGATGCAGAGAACAATGG 59 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 1 2 2 85 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108085 25108104 GTTGGCTACTTGATTGAGGG 59 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 3 2 2 80 8 119085454 119085472 TCTTTCTTGGTACAACCGG 57 119085515 119086674 CACCCTTGATGATCTACCTC 57 NA Rattus norvegicus 81 Olr878 ENSRNOG00000043334 ENSRNOT00000064311 2 1 1 60 7 3499379 3499400 TTCTTTGCCATCTTTCTTGGAG 59 3499340 3499359 GATCGTAAGACATAGCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Has1 ENSRNOG00000010994 ENSRNOT00000014824 2 1 1 80 1 59725409 59725427 GGTAGCCTTCAATGTGGAG 58 59724880 59725366 CTGTATAGACCCAGAGGACC 58 NA Rattus norvegicus 81 Caap1 ENSRNOG00000007299 ENSRNOT00000010173 2 1 1 109 5 113500780 113522521 ATCAGTCAGCAAGATACCTG 57 113481469 113481490 CTGAGTACATCACTATCTTCCC 58 NA Rattus norvegicus 81 Tcf25 ENSRNOG00000017023 ENSRNOT00000046155 1 1 1 80 19 56186842 56186862 GCTAAACATGGAAACCCAGAG 59 56186902 56187928 ACTTGCATTAGACTGTTCCGA 60 NA Rattus norvegicus 81 Tcf25 ENSRNOG00000017023 ENSRNOT00000046155 3 1 1 80 19 56187920 56187938 AATGCAAGTGGCAAACTCC 59 56187981 56188706 TCCATTCTCCGAGGATTCTC 59 NA Rattus norvegicus 81 Tmem54 ENSRNOG00000024259 ENSRNOT00000033285 3 1 1 95 5 147291662 147293941 CCATTGTGGTCATCCTTGC 59 147294089 147294107 CCACACTCAGGCTAAACAC 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 1 1 1 60 7 11625460 11626358 GATCGAACGCATCAAGGTC 59 11626382 11626400 ATGTTGCTCACAGTAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100362338 ENSRNOG00000033625 ENSRNOT00000043796 1 1 1 60 17 11037621 11037641 TTTATGCCCGAGATGAAACTG 59 11037581 11037601 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reg4 ENSRNOG00000019046 ENSRNOT00000025821 2 1 1 80 2 200398022 200402916 AAGTCCTGAGTGATATCTTGAGAC 60 200402954 200402973 TCCGGAAGTACCCATAACAG 59 NA Rattus norvegicus 81 Tor4a ENSRNOG00000009369 ENSRNOT00000012406 3 1 1 60 3 2410244 2410262 TAGCCATTGTAGGGTTCCA 58 2410202 2410220 CGTTGTGCATTATCGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3571 ENSRNOG00000035523 ENSRNOT00000053646 2 1 1 60 18 2054964 2054988 CCATAGCATTCTATGTTCATATGGG 60 2055004 2055024 AATAGTGCCTACTCAGAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910562 ENSRNOG00000045815 ENSRNOT00000073285 2 1 1 60 11 23057866 23057887 TCATGTCCTAGAAATGATGTCC 58 23057827 23057848 TACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gramd1a ENSRNOG00000021106 ENSRNOT00000028660 3 1 1 80 1 89570506 89572675 CGCAAGTTCACAGATGTGAC 60 89570445 89570464 GATGGTGTAGGTCAGGACTC 59 NA Rattus norvegicus 81 Frmd8 ENSRNOG00000020881 ENSRNOT00000028331 3 1 1 90 1 221228107 221228343 ACATAGCCATGGATGAGCC 60 221227887 221227906 AAGACCTCCTCATCATGGAC 59 NA Rattus norvegicus 81 Ccsap ENSRNOG00000017690 ENSRNOT00000023911 3 1 1 96 19 56620604 56620622 GTTTGCCCTTTATGGCTGG 60 56617765 56620547 CTCATGAATCTCATGCACAGAG 59 NA Rattus norvegicus 81 Gpr84 ENSRNOG00000036834 ENSRNOT00000055279 1 1 1 80 7 144935990 144936709 AACCTCAGGTGAGTCTCCA 60 144935928 144935948 TCGATAGCCCAATACAGACTC 59 NA InUTR Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 1 1 1 60 3 176281595 176281613 ACTACATCCTCATGCAGGC 60 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc1l2a ENSRNOG00000022267 ENSRNOT00000029100 3 1 1 60 X 73895231 73895249 ATGTCAACTACCAGCAACC 58 73895189 73895208 ACGTCAAAGTTCATGGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Habp4 ENSRNOG00000019027 ENSRNOT00000025801 3 1 1 81 17 1690422 1690856 GTAGCAGTGATAAAGCAAACAG 58 1690896 1690916 CTAGTGTCTTTACCTGATCCC 57 NA Rattus norvegicus 81 Yeats4 ENSRNOG00000005689 ENSRNOT00000007580 2 1 1 80 7 60289560 60289578 TGCAGCAACTGTTAACCAC 59 60288105 60289519 TCACTTCAAGTTCTGCAAACTC 60 NA Rattus norvegicus 81 AABR07059072.1 ENSRNOG00000050173 ENSRNOT00000070847 1 1 1 81 4 3122792 3122810 CGTTCAGCTGCTTATGCTG 60 3122727 3122748 AAGAGACCTGAACAACCCTC 59 NA Rattus norvegicus 81 Kcnk4 ENSRNOG00000021140 ENSRNOT00000028704 2 1 1 80 1 222184539 222184939 GATTATGTACCAGGCGATGG 58 222184478 222184496 TAGGCCAAACAGGATCCAG 59 NA Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 3 1 1 80 7 127189313 127223132 GTACACAGACCAGGAGGAC 59 127223175 127223194 GTATCAGCCTCAATGTTGCG 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 1 2 2 80 4 57830765 57832746 GCTTCACTAAGTAAAGCAAGC 58 57832788 57832806 CAGCACTAGTGAGGAATCC 57 NA Rattus norvegicus 81 Gnptg ENSRNOG00000024455 ENSRNOT00000029674 1 1 1 80 10 14593521 14593539 ACGGGAGGTACAAAGACTG 59 14593371 14593477 TGAGAGTGGGTGGTTTCTG 59 NA Rattus norvegicus 81 Zfp334 ENSRNOG00000019099 ENSRNOT00000033873 1 1 1 60 3 162058326 162058344 CCTTTGAATGTGGCGAGTG 60 162058284 162058302 TGATGTATCGTGAGGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarcad1 ENSRNOG00000006391 ENSRNOT00000008585 3 1 1 80 4 95938498 95939908 CTCAGATTTCTGAAAGGATCCA 58 95939946 95939967 CCTTAGTTGACAAGAGAAACAC 57 NA Rattus norvegicus 81 Rnf222 ENSRNOG00000022964 ENSRNOT00000038454 2 1 1 121 10 55478305 55478323 TAGGAAATGCCTCCACAGC 60 55478406 55481660 TCACTGAGATCCAAGTCTGAG 59 NA InUTR Rattus norvegicus 81 AC124205.1 ENSRNOG00000012595 ENSRNOT00000016814 3 1 1 86 5 140486352 140486378 GGATATGAGTGGATATGCATTGC 60 140486424 140486442 CAGAGTTGCTCTTGTTGCC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000013443 2 1 2 83 3 6790704 6797057 AAGGTGATAACCGGGTCTG 59 6797104 6797122 TCATGAAGTCCACCATGGA 58 NA Rattus norvegicus 81 Pawr ENSRNOG00000005917 ENSRNOT00000008222 1 1 1 80 7 51352559 51352578 AGATCGAGAAGAGGAAGCTG 59 51303198 51352516 ACTCATCTAAGCACTCCGC 60 NA Rattus norvegicus 81 Mb21d2 ENSRNOG00000024040 ENSRNOT00000032569 3 1 1 116 11 75434432 75530657 TTTCCATGCTGGGAATGGT 60 75530734 75530755 TTAACTCATCTAGGTCCAGGTC 59 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 3 2 2 178 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428690 12429720 CATCAAAGAACACCTGCGT 59 NA InUTR Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104670007 104670026 GTTTCTGCCTTACCACTTGC 60 104663288 104669969 GGAATTACAAATAGTCCTGTGAGC 60 NA Rattus norvegicus 81 LOC100359671 ENSRNOG00000040039 ENSRNOT00000048888 1 1 1 60 11 29638898 29638918 CCAAATCTAAGAACCACACCA 58 29638858 29638877 TTGATACCATTTCTGTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 2 2 2 80 8 116273328 116273347 GTCGTAGTATGATTGACGGA 57 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 Tex11 ENSRNOG00000025672 ENSRNOT00000041731 2 1 1 80 X 70730067 70731279 TTACTTGGATACAGCACTCCT 59 70730007 70730028 GCATCATTAACCATAGGATCCA 58 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 2 1 2 188 3 114918711 114920914 AGAGGCATTTCTACCAGCC 60 114921066 114921620 TTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Vdac1 ENSRNOG00000006375 ENSRNOT00000008477 3 1 1 81 10 37747317 37749156 TACTAATGTGAATGATGGGACG 58 37749198 37749216 GAGATTGACAGCAGTCTCC 58 NA Rattus norvegicus 81 Olr1514 ENSRNOG00000033267 ENSRNOT00000048167 3 1 1 60 10 61044816 61044835 TGGCTAACTTCTACTGTGAC 57 61044775 61044793 AAGCGAATGTCAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 3 2 2 81 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859815 112863266 GATTGTATATTCACCTGTGCTGG 60 NA Rattus norvegicus 81 LOC691015 ENSRNOG00000043512 ENSRNOT00000068656 2 1 1 60 1 177592035 177592054 TCTGAACAATCTGAGTGCTG 58 177591994 177592014 TTTGCTGCTTAGCACATTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtb1 ENSRNOG00000023213 ENSRNOT00000057341 1 1 1 88 5 127269919 127269937 ATTCATCCTCTGCTCTGGG 59 127268910 127269869 TTCTGACACCAAGCTATTTCC 58 NA Rattus norvegicus 81 Igh-1a ENSRNOG00000048402 ENSRNOT00000045874 3 1 1 81 6 138092877 138093004 CACAAATGCCCAGTTCCTG 59 138092814 138092834 AGATCAAGAGGATGTCCTTGG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 1 2 2 80 10 47981017 47983601 CTGACCAGGTTATTGTGCAG 59 47980956 47980974 GGTAGCTGGCTAGAATGGA 59 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 2 2 2 80 4 153909021 153909323 GACTAGACAGCCAGTTTGTG 59 153909366 153909384 TCTTCTTACGGAACACCCG 59 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000057362,ENSRNOT00000080701 1 2 2 80 5 126864663 126864683 AAGGGACAGAAGTGATTCTGG 60 126864725 126876025 AGGTTTCTGGATTCCCGTC 59 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 2 2 2 80 14 39748293 39748312 GCTCACAATATGACAATGCC 58 39748355 39749980 GACTGTAAGCCTCATGGTG 58 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000047759 ENSRNOT00000075350 2 1 1 61 1 121185933 121185952 AGGCTGCTGGTTATATTCCA 59 121185891 121185909 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfn1 ENSRNOG00000026087 ENSRNOT00000038874 2 1 1 80 13 52818866 52818884 GAGACCTCAGCAACTCCAG 60 52817305 52818824 TCAGCTTGTTGATCTGTAGCA 60 NA Rattus norvegicus 81 Supt4h1 ENSRNOG00000007845 ENSRNOT00000010448 1 1 1 80 10 75032441 75032951 CTCGTTAGTCAAGACTATAGACCA 59 75032988 75033008 CTGTTGCCCTTCATTTGTAGG 60 NA Rattus norvegicus 81 RGD1564550 ENSRNOG00000032558 ENSRNOT00000042211 2 1 1 60 10 78417196 78417216 GACCCAGTAAGATTAGAGCCA 59 78417238 78417256 GTCTCCAGCTTCTCTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 2 1 1 80 14 62577400 62594262 TCTATGGATCCAGACAACCAC 59 62577340 62577361 CTGATGACAAGAACATCTCTGG 59 NA Rattus norvegicus 81 Kif2b ENSRNOG00000002535 ENSRNOT00000003421 3 1 1 60 10 79096608 79096628 GTGTACGATCTGCTAAACTGG 59 79096568 79096587 TTTGCTGATTTCCATCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1373 ENSRNOG00000039760 ENSRNOT00000060989 2 1 1 60 10 12603246 12603265 AACCCTTTCATCTACAGCCT 59 12603286 12603306 TGAGCACTTTCCTTAAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uhmk1 ENSRNOG00000002941 ENSRNOT00000003950 3 1 1 80 13 88527022 88527043 GAGTGTCAGAAATATGGACCAG 59 88523582 88526984 GTACTCAACAAAGACTTGTCCT 58 NA Rattus norvegicus 81 Gtpbp1 ENSRNOG00000014634 ENSRNOT00000049247 1 1 1 80 7 120938878 120938896 CTGGCACTCAATGTACCTG 58 120938939 120940570 CTTCAGGGTTTCTTGAAGGA 58 NA Rattus norvegicus 81 Tlcd1 ENSRNOG00000012579 ENSRNOT00000016840 1 1 1 80 10 65439984 65440313 TTCATCATGTCATGGCTATGG 58 65440353 65440373 GTAGTGTTAAGACTCCACCTC 58 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 2 1 3 80 4 163440922 163440942 CTGGATTCTTTCGAAAGAGCA 59 163440557 163440880 GCATCTCCGTTATCCTTGG 58 NA Rattus norvegicus 81 Rtkn ENSRNOG00000009022 ENSRNOT00000031964 2 1 1 80 4 114845443 114845583 TTTCAAGAACAAAGGCGATCTG 60 114845619 114845642 ATCTCAGTATCCTGAATCTGTTCC 60 NA Rattus norvegicus 81 Ankrd32 ENSRNOG00000040279 ENSRNOT00000018457 1 1 1 80 2 4102034 4102054 CAAAGAGCGTTACTAATGCTG 58 4101300 4101993 AGCATGGTTTAACTCAAGGA 57 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258,ENSRNOT00000081599 2 2 2 80 7 59930889 59930909 AAGCACAGGATTAAACTAGGG 58 59930748 59930848 ACATACAGAAGTGATCCGGT 59 NA Rattus norvegicus 81 Llgl1 ENSRNOG00000003948 ENSRNOT00000005366 1 1 1 80 10 46944001 46945745 GGCTGTCAAGATCTATGGG 57 46945789 46945807 AAATGCATCTGGGTGACAG 58 NA Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000082321 2 1 2 134 20 3935573 3935591 CATGAGCAGAAGTCAGGAG 58 3936956 3936974 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000078036 3 1 2 60 20 3938480 3938499 GACACAGAAATGGCTTGGAG 59 3938520 3938540 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr14 ENSRNOG00000018518 ENSRNOT00000055002 3 1 1 80 1 198915584 198915603 TTCAGCAACAAATACGGAGG 59 198915651 198915923 TATTCAAGGCACTGATTGGTC 58 NA Rattus norvegicus 81 Ppp1r14a ENSRNOG00000020676 ENSRNOT00000028070 2 1 1 85 1 87230811 87230830 TGGAATTGGACAGTGAGGAG 60 87231330 87232653 CTGGACGAAGTCCTCTGTG 60 NA Rattus norvegicus 81 Rnps1 ENSRNOG00000008703 ENSRNOT00000010915 3 1 1 80 10 13793022 13793359 TGACCAAGGATCATATCATGGA 59 13793400 13793418 GATGCATCCTTTCCACAGG 59 NA Rattus norvegicus 81 Ccdc81 ENSRNOG00000033733 ENSRNOT00000055488 1 1 1 80 1 154077462 154077481 AAATGACAATGAGAAGCCCA 58 154076994 154077420 ACATAGCACATTTCCTGTCC 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 3 2 2 61 7 144267238 144269423 CTGATCAGGAGCACCTCTC 59 144267195 144267213 GGTCGCTTTAACTCCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Opalin ENSRNOG00000022386 ENSRNOT00000030656 3 1 1 92 1 260326434 260328606 ATATCCGAGAATCCTAGGCAG 59 260326362 260326382 ACTTCCTGAGACAGTCTTCAC 60 NA Rattus norvegicus 81 Fam210b ENSRNOG00000004466 ENSRNOT00000005901 1 1 1 129 3 170360231 170360249 CTAAGCAAATCCCAGCAGC 59 170360342 170361171 ACATGTCTATGCCACTGGA 58 NA Rattus norvegicus 81 Rbm15b ENSRNOG00000014161 ENSRNOT00000018995 1 1 1 60 8 115618632 115618650 GACTTCTCACAGCAGTACC 58 115618590 115618609 GTTCTTCCTCTAACTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 2 2 2 96 7 12517651 12517672 CAGCAAGATCTGTGTAAATGGG 60 12516849 12517594 TTTGATGGCATTTCCCAGC 59 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 3 2 2 80 2 238164885 238164904 ATTGTGGATTTCTGCAGTGG 59 238163061 238164691 TATTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Eif4g2 ENSRNOG00000017158 ENSRNOT00000064535 1 1 1 80 1 175888282 175888304 CCAGATAACTATGATTCCTCCCA 59 175888082 175888243 AGACCAAGTTGAGGTGTCTG 60 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801,ENSRNOT00000080379 1 2 2 80 3 123077815 123077834 GTTGAGCTGAAGAAGGAGGA 60 123077877 123077975 ACTCTTGTTCTCCCTGGTG 59 NA Rattus norvegicus 81 Mpeg1 ENSRNOG00000021084 ENSRNOT00000028622 2 1 1 80 1 228726950 228726969 TGACTGTCATCCATGGGAC 59 228727011 228727031 CCTAGTGCTATGATGACTCCC 60 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242,ENSRNOT00000037296 2 2 2 80 12 31350044 31350062 AAAGAAGAGCTGGAGGACC 59 31350106 31351201 CTGCTCAATAGCCTTCAGC 59 NA Rattus norvegicus 81 Ifitm7 ENSRNOG00000021674 ENSRNOT00000039434 1 1 1 60 11 34037413 34037431 AATGCCTGAACATCAGCTC 58 34037455 34037473 GCAACCATAGTGGTAACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bsdc1 ENSRNOG00000008338 ENSRNOT00000011054 1 1 1 81 5 147661944 147664791 GCAGTCAAAGAGAAGTCCAC 59 147664835 147664853 TGTCATGCTGTACCACCTG 60 NA Rattus norvegicus 81 Bsdc1 ENSRNOG00000008338 ENSRNOT00000011054 3 1 1 83 5 147686472 147686492 ACTTTGACTTGGACATGACTG 59 147686535 147688369 ACTCTACATCTTCAAGCTCCC 59 NA Rattus norvegicus 81 Misp ENSRNOG00000010423 ENSRNOT00000013857 3 1 1 84 7 12699203 12700529 AAAGGAGTCGTGGTATGCA 59 12698270 12698288 CTTGTGTCGCTTTACCCTC 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 1 3 3 80 5 173479469 173479487 CCAGAGCATTGAGGATGAC 58 173478492 173479425 TGGACATATCTCTGCACCA 58 NA Rattus norvegicus 81 Orc1 ENSRNOG00000008841 ENSRNOT00000012492 3 1 1 80 5 128202917 128202935 AGAGCAGGAGTTCCAAGAC 59 128202976 128203487 CCAGAAATGTACATACACCCTC 59 NA Rattus norvegicus 81 Tdrd9 ENSRNOG00000053631 ENSRNOT00000086594 3 1 1 80 6 136625882 136631144 GGTGATGGAGTTAAGAGTTGAC 59 136631184 136631203 TCCGTAGTTGAATTCCACCC 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769,ENSRNOT00000007087 1 2 2 80 10 55577620 55577638 TAGATGGTGGCAAGGACTC 59 55577472 55577576 AAATGACCAGTGACCCAGG 60 NA Rattus norvegicus 81 Smoc1 ENSRNOG00000005998 ENSRNOT00000007947 1 1 1 80 6 104862902 104862920 CAAGTTGTGAGAGTGACGC 59 104862964 104864871 CAGGACAGCCTGGTAACTC 60 NA Rattus norvegicus 81 Olr1204 ENSRNOG00000051111 ENSRNOT00000076868 1 1 1 60 8 40489418 40489437 TAATGTAACAATGCCCACCC 58 40489457 40489478 GATATTGGAAAGGATCAAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0735.1 ENSRNOG00000051070 ENSRNOT00000076184 2 1 1 60 X 72561760 72561781 GAGGATATTGATGCCTACAGAG 58 72561721 72561739 CAACAACCACCCATTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000066439 2 2 3 87 11 11516875 11585030 ATTCGGACTGACGGATCTC 59 11516806 11516824 CTCCCTTGGAGACGATGAC 60 NA Rattus norvegicus 81 Lzts3 ENSRNOG00000021231 ENSRNOT00000028835 2 1 1 83 3 123178163 123178505 GCTAGACCAGTGCTCAGAG 60 123178098 123178116 AGGTTCTGCATGGAATGGA 59 NA Rattus norvegicus 81 Stc2 ENSRNOG00000020729 ENSRNOT00000028146 2 1 1 80 10 16545006 16545024 AAATCCAGGGCTTACATGG 58 16545068 16547218 TGATGAATGACTTGCCCTG 58 NA Rattus norvegicus 81 LOC100362687 ENSRNOG00000043109 ENSRNOT00000063929 2 1 1 91 6 142371782 142371801 ACAAAGCATGGTTTACTTGC 58 142371689 142371731 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Mir143 ENSRNOG00000035603 ENSRNOT00000053726 3 1 1 60 18 56971315 56971333 GGTCAGTTGGGAGTCTGAG 59 56971273 56971291 GCTGCAGAACATCTTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 1 2 2 80 X 153644514 153644532 GCAGTGATGAAGATGACCT 57 153631501 153644470 TTTCAACAGCCTGGTAGAG 57 NA Rattus norvegicus 81 Slc35e2b ENSRNOG00000017075 ENSRNOT00000023097 2 1 1 83 5 173040356 173041713 TCTTCATGGATGTCCCTGTG 60 173041759 173041777 CATCTGTCAGCAGCAACAG 59 NA Rattus norvegicus 81 Mt3 ENSRNOG00000018958 ENSRNOT00000025669 1 1 1 80 19 11324919 11325778 GAACTGCAAGAAGAGCTGC 60 11324857 11324875 TCTTCGCCTTTGCAAACAC 60 NA Rattus norvegicus 81 Gfral ENSRNOG00000032063 ENSRNOT00000052341 1 1 1 80 8 83258276 83261572 ATTATGCAGGACATACTACCG 58 83258216 83258234 CAGGTCTCATCTTCACGAC 58 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 2 1 1 80 1 28126322 28155761 GGACAGCTTTGATTTCATAGG 57 28155802 28155821 GGTTGTAGTTGTAAGTGGGA 57 NA Rattus norvegicus 81 AABR07058968.1 ENSRNOG00000047477 ENSRNOT00000074622 3 1 1 80 7 145574373 145575181 ACTTCTGATACTGCTGATGGA 59 145574313 145574331 AGAGGACTCAGCATCTTGC 60 NA Rattus norvegicus 81 Cebpg ENSRNOG00000021144 ENSRNOT00000028703 2 1 1 60 1 91290903 91290921 CCCATGGATCGAAATAGCG 59 91290861 91290879 TCACAGCCATATTGTTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334,ENSRNOT00000084236 1 2 2 80 12 36940251 36944016 AAGAAGCAGCAACAGTTGG 59 36944060 36944078 TGATTCTATGGGTGGTGGC 60 NA Rattus norvegicus 81 AABR07062181.1 ENSRNOG00000055455 ENSRNOT00000079951 3 1 1 80 4 163950405 163950423 CAGATGTCAACAAGCCTGC 60 163946769 163950361 AGCTGAAGGAACTTCAGCT 59 NA Rattus norvegicus 81 AABR07065772.1 ENSRNOG00000050859 ENSRNOT00000072338 2 1 1 107 6 140571886 140571988 ATTTCCAAGCTGTGCTCTG 59 140571797 140571815 AGTGAGAACCCAGAGACAG 58 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 1 1 1 80 10 75056490 75056509 CTGCAGGAAACCAACATGAG 60 75057063 75057084 TAGAGCCTTACGACAACTCC 59 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 2 1 1 80 10 75056491 75056509 TGCAGGAAACCAACATGAG 58 75057064 75057085 CTAGAGCCTTACGACAACTC 58 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 1 1 2 73 6 139293172 139293300 AAAGGTGTCCAGTGTGAGG 60 139293337 139293355 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Fam102a ENSRNOG00000050834 ENSRNOT00000073087 3 1 1 80 3 11582798 11582816 TGACGCAGATGACATTGTG 59 11582858 11582968 CGAAGGTTACTATCCTCAGTG 58 NA Rattus norvegicus 81 Ythdc2 ENSRNOG00000039241 ENSRNOT00000060098 2 1 1 80 1 182116424 182116442 TTACGAGCCAAGTAGAGCA 59 182116167 182116380 AATCTAAAGCCATCCAGCC 58 NA Rattus norvegicus 81 LOC498368 ENSRNOG00000002191 ENSRNOT00000002982 3 1 1 92 14 46052423 46053140 CAAAGCTATCTCTTTGATCCAG 57 46052352 46052370 TCTGACAGTGTCATCCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Noc2l ENSRNOG00000021392 ENSRNOT00000066561 1 1 1 80 5 173671955 173671976 CAGAGGAATGAAAGAAGGAGGT 60 173672016 173672285 GTGTCTGTGTCTCCATCCTC 60 NA Rattus norvegicus 81 Arrdc3 ENSRNOG00000045649 ENSRNOT00000072849 3 1 1 80 2 8740164 8740182 AGATCCCACCAGTTTCACC 59 8740221 8740567 GAATATCCACGTATACCATTAGCG 59 NA Rattus norvegicus 81 Msx2 ENSRNOG00000018355 ENSRNOT00000024766 2 1 1 267 17 11684015 11684033 CTCATGTCCGACAAGAAGC 59 11687954 11687972 TCTTGTGTTTCCTCAGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Zscan30 ENSRNOG00000030131 ENSRNOT00000039216 3 1 1 83 18 15871798 15873515 GGTAAGATCCTCACCTCAGAC 59 15871394 15871413 AGCTGGAAATTAGAGCTGGA 59 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477,ENSRNOT00000081601 2 2 2 80 14 66896748 66897952 CTTCGTTTACTGTCTCTACATGG 59 66896690 66896708 GTGTGACAAGGCTGAAAGG 59 NA Rattus norvegicus 81 LOC102555727 ENSRNOG00000029686 ENSRNOT00000052316 1 1 1 80 4 9810504 9810527 TTTGCATCAAAGACGTGATGG 60 9810568 9810587 CCTCATACAGTGGAATGGGT 59 NA Rattus norvegicus 81 Lin28a ENSRNOG00000060320 ENSRNOT00000077165 3 1 1 80 5 152235374 152235392 TCTGTATTGGGAGTGAGCG 59 152233361 152235330 CACAGTTGTAGCACCTGTC 59 NA Rattus norvegicus 81 Degs2 ENSRNOG00000011716 ENSRNOT00000015855 3 1 1 80 6 132595051 132595069 TCAATGTTGGCTACCACGT 60 132592345 132595007 GTGCAATCATCCGTACCAG 59 NA Rattus norvegicus 81 Cox10 ENSRNOG00000024972 ENSRNOT00000034261 3 1 1 81 10 50560737 50560755 AGATGAAGCTTCACACCGA 59 50527530 50560692 GTGCTTACCACAAGAGCTG 59 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 3 2 2 81 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314807 105314826 ACAGAGAAGATGACGAACCC 60 NA Rattus norvegicus 81 Olr1236 ENSRNOG00000050733 ENSRNOT00000035054 2 1 1 60 4 1483249 1483270 CAGCATTCATGTATCTTAAGCC 58 1483287 1483309 GTGGATACTTTGTCTTCATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dxo ENSRNOG00000000422 ENSRNOT00000000483 3 1 1 82 20 4518841 4518859 GAACCCAGAAGGTTTCGTC 59 4518905 4519031 AGCCTTCTTGGTCATTCCT 59 NA Rattus norvegicus 81 RGD1309188 ENSRNOG00000009255 ENSRNOT00000012269 1 1 1 230 8 22626174 22626192 AAGTGGTACCACGACAGTG 60 22626465 22626483 CTTGATGCGTCAAGCAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Serinc1 ENSRNOG00000029360 ENSRNOT00000001066 1 1 1 80 20 38969684 38969705 TTCTTTCACTTCATGCTCTTCC 59 38967455 38969643 ACGAGAAGGCTCATACCTG 59 NA Rattus norvegicus 81 Zfp560 ENSRNOG00000048394 ENSRNOT00000071010 2 1 1 83 8 21384108 21384126 TGCAACTTAACACCAGAGG 58 21383624 21384064 GGCTATTTGACAGTTGTATCTC 57 NA Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 2 1 1 105 10 70100735 70100753 GACCAAAGGTGGCATTACG 59 70101016 70101034 TCGACCCTTTCCTTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000092095 1 1 2 80 7 118895555 118906307 AAGATTCCTGAGGAGAAATGCT 60 118906348 118906366 GAGCTGCAGGTTCTCTAGG 60 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000074888 1 1 2 87 7 118965957 118965981 GAGATCTTTGAAGATTCTGATGGAG 60 118966025 118968428 AGGCATCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 LOC100360654 ENSRNOG00000045963 ENSRNOT00000047422 3 1 1 60 17 42168343 42168361 TCACCTTCAGAAGTCGACC 59 42168384 42168403 ATACTTTCTCTTGCGCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Farp1 ENSRNOG00000011203 ENSRNOT00000015271 1 1 1 80 15 106621915 106622857 CTACAAATCACACCAGGACAG 59 106622899 106622917 TCAGACTCTGAGGGAATGG 58 NA Rattus norvegicus 81 Cnot3 ENSRNOG00000053234 ENSRNOT00000088502 1 1 1 80 1 64132473 64132497 CAAGTATATGATGTGGTTTCAGAGG 60 64131188 64132436 AAGTAGATGTAGGTGCCCTG 59 NA Rattus norvegicus 81 Kcp ENSRNOG00000021855 ENSRNOT00000050795 1 1 1 80 4 56777629 56777647 GAGTGTGCCAGTCTTTGTC 59 56777468 56777586 ATTTAGGAAACAGCCGTCAC 59 NA Rattus norvegicus 81 Ifna5 ENSRNOG00000031046 ENSRNOT00000049705 3 1 1 60 5 107039686 107039705 CTCAAGCTATCCTTGTCCTG 58 107039645 107039664 TTTGATGTGAAGAGGCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 1 1 1 66 1 213745008 213745574 CTGGTCCACTCTGTCAAGG 60 213744960 213744978 CATACTGCTTTGCAGCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 2 1 1 70 1 213745008 213745574 CTGGTCCACTCTGTCAAGG 60 213744956 213744974 GAGCCATACTGCTTTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1309036 ENSRNOG00000037298 ENSRNOT00000056420 3 1 1 106 1 100347396 100348425 GAGACTTCGGAGGATTTCAC 58 100347309 100347327 ATATTCTCGTAGCGGATGC 57 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206,ENSRNOT00000024711,ENSRNOT00000087402 2 3 3 80 5 167997448 167998563 GCGAGCTGGGATTAAAGTC 59 167997386 167997406 GGACAAATCACTACATCACGG 59 NA Rattus norvegicus 81 Crispld1 ENSRNOG00000017773 ENSRNOT00000024199 2 1 1 80 5 692157 692176 CCACAACATGAACATCTGGG 59 691456 692114 CACCAATTTCCCTTGGGAG 58 NA Rattus norvegicus 81 LOC684936 ENSRNOG00000033559 ENSRNOT00000041273 1 1 1 60 10 36502265 36502283 TTTGTTCAGAAGTGTGCCC 59 36502223 36502241 GTCCAGTCTTATGCTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903,ENSRNOT00000011373 3 2 2 84 6 26836482 26836501 CCTCTATCACTACGTGGCAG 60 26836548 26837211 ACTATGTCCTGGAAGCCTG 59 NA InUTR Rattus norvegicus 81 RGD1565317 ENSRNOG00000023182 ENSRNOT00000017230 1 1 1 60 10 66509172 66509191 CCAGATCAAAGCTCATGTGG 59 66509213 66509232 GAGCACGACTTGATCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065789.2 ENSRNOG00000031918 ENSRNOT00000040523 3 1 1 87 6 141365023 141365122 CTCTTCCTGGTGTCCTATCC 59 141364955 141364973 GAACAGGTGACAGACAGTG 58 NA Rattus norvegicus 81 LOC100910833 ENSRNOG00000006587 ENSRNOT00000009120 1 1 1 80 6 132075826 132075844 AATCAGGTACTGGAGCCAC 59 132074164 132075783 TGCTACATTTCTGCAACAGC 60 NA Rattus norvegicus 81 Pi4k2b ENSRNOG00000003924 ENSRNOT00000005349 2 1 1 80 14 60580508 60580529 GGGAAATGATAATTGGCTAGTC 57 60578139 60580468 TCGATCCAGTTTGATTCCTC 57 NA Rattus norvegicus 81 Atn1 ENSRNOG00000060594 ENSRNOT00000088895 1 1 1 80 4 157274576 157274746 CGACAGAATAAAGACTCGATGTC 59 157274518 157274536 CCTCGATCTCAGCTCTTCC 59 NA Rattus norvegicus 81 Stam2 ENSRNOG00000027447 ENSRNOT00000037857 1 1 1 80 3 38236746 38236766 CTCAGTCTATTCGAAGCTCCA 59 38233738 38236705 GACTGGACTGGGTATGTCTG 60 NA Rattus norvegicus 81 Ptk7 ENSRNOG00000039976 ENSRNOT00000061432 2 1 1 80 9 16705516 16705534 CTACCGTTGCATTGGTCAG 59 16705578 16705821 ATGTCTTCGATCTCTGCCA 59 NA Rattus norvegicus 81 Ctsj ENSRNOG00000046476 ENSRNOT00000038758 2 1 1 80 17 4106726 4106744 TGCACAACAAGGAGAATGG 58 4106785 4106954 ATTCTTCACCAGTTGTATCAGC 59 NA Rattus norvegicus 81 Pdcd2l ENSRNOG00000021119 ENSRNOT00000028674 1 1 1 80 1 90051404 90051422 TAGCAGTGGAGATCCAACG 59 90048223 90051364 CTCCATGAATACCTCAGAATCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000010906,ENSRNOT00000077770 3 2 2 80 6 135705742 135708652 GGAGAAGAAGGTTTCCTTGC 59 135708692 135708713 CTACATATCTGGTTGTGCAGAC 59 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910,ENSRNOT00000076336 3 3 3 80 X 70974880 70974898 GTGGACCTCATGTCAATCG 58 70974366 70974837 GTCAGGCTGATATCTGAGGA 58 NA Rattus norvegicus 81 Thnsl2 ENSRNOG00000006508 ENSRNOT00000008698 2 1 1 80 4 98981433 98981453 TGTTCAGAAGGGAGACTTCTC 59 98981285 98981393 TTGTAGGGTACCTGAATGTCC 59 NA Rattus norvegicus 81 Thnsl2 ENSRNOG00000006508 ENSRNOT00000008698 3 1 1 80 4 98981433 98981452 GTTCAGAAGGGAGACTTCTC 57 98981284 98981392 GTTGTAGGGTACCTGAATGTC 58 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 1 1 2 80 9 15622183 15623992 TGAGAATGGAGACGGTCAG 59 15622121 15622141 TGAAGCATCTTCATTACCCAC 58 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 2 1 2 81 9 15622183 15623993 ATGAGAATGGAGACGGTCAG 59 15622121 15622141 TGAAGCATCTTCATTACCCAC 58 NA Rattus norvegicus 81 AABR07065789.1 ENSRNOG00000006333 ENSRNOT00000008333 2 1 1 60 6 141291314 141291335 TGGAACTTGCTATTTCTGATGG 59 141291197 141291215 GTACCAACTGGATCTGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ube2l3 ENSRNOG00000001862 ENSRNOT00000046159 1 1 1 80 11 88067348 88083070 GCTTATTGTTCCTGACAACCC 60 88083111 88083130 TTGAAGGGATACTCTGCTGG 59 NA InUTR Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000075564 3 1 2 87 8 133197107 133197126 ATCCAAGAGCTTGATGAGGG 60 133197174 133213286 CTGCAATTTGTTTCACACTGG 59 NA Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 2 2 2 80 10 13163197 13166142 TTTCGAGCAGATGACACCT 59 13163135 13163153 TGGCTTCATCACATCTGGA 59 NA Rattus norvegicus 81 Map6d1 ENSRNOG00000001911 ENSRNOT00000058043 1 1 1 86 11 84321457 84325780 GTCTTATAGACAGGAATTCCAAGC 59 84325825 84325843 TGAGTCGTGACAACTCTGG 59 NA Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 2 1 1 67 1 16987937 16989114 GAGACTTTAACCAAGCAAGTG 58 16987890 16987910 TCAGTTTCTTTCTTCAGAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1461 ENSRNOG00000047410 ENSRNOT00000040081 3 1 1 60 10 45160050 45160068 TCTACTTGCTCCTCTCACC 58 45160092 45160110 ACACAAAGCTTCCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 1 1 1 60 10 82776069 82776087 GGACTGTGGCTGATAAGGG 60 82776111 82776129 ACAGCTTTCTTCAAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 2 1 1 60 10 82776134 82776153 ATCACAGGGTACAATATGGC 58 82776176 82776194 CTAGATTCTGGAGCACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybpc2 ENSRNOG00000019627 ENSRNOT00000067754 3 1 1 80 1 100521023 100521270 CTTTGTCAAAGAGCCTCCA 58 100520961 100520979 GACATTTCCACTCGGTCAC 59 NA Rattus norvegicus 81 Rpp25l ENSRNOG00000059653 ENSRNOT00000082496 1 1 1 60 5 58096487 58096505 CCAGTGAATGTGGCTACCA 60 58096445 58096463 GAACTAGGTATGGAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf3 ENSRNOG00000020888 ENSRNOT00000028343 2 1 1 80 1 218003169 218003187 CTACCAAGTACCACCTCCA 58 218003231 218004986 TCTCCAGGATGCTATAGGC 58 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139,ENSRNOT00000007119 1 2 2 114 4 166211719 166211737 AGCTATGCTCAGGAACCAG 59 166213872 166213890 CTTGTTGGTTTCCAGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560883 ENSRNOG00000045639 ENSRNOT00000071535 1 1 1 80 2 4340260 4341617 AGCTAAGAAACCCATATTCCTG 58 4341657 4341676 TAGTCCGTAAGCTGAAACTG 57 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000061506 ENSRNOT00000084195 2 1 1 60 10 60998060 60998079 ACTTCTACTGTGACCTTCCC 59 60998102 60998120 TCATTGATCTGGGTGCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690468 ENSRNOG00000030747 ENSRNOT00000042661 1 1 1 60 2 199479148 199479166 TAAAGTTCAAGGTCCGCTG 58 199479106 199479126 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076225,ENSRNOT00000076545 3 3 3 80 1 48049613 48049634 GTAGGACATAACATGATGACGG 59 48049673 48051107 AAACTGATCGTAGCTTTCTGG 59 NA Rattus norvegicus 81 Stip1 ENSRNOG00000021164 ENSRNOT00000028743 3 1 1 80 1 222275172 222275191 GATAATGAGTGACCCAGCCA 60 222274589 222275132 TTCTTTAAGTGTTCGCTCAGAG 59 NA Rattus norvegicus 81 Rbmxl1 ENSRNOG00000012138 ENSRNOT00000016184 2 1 1 60 19 33084275 33084295 ATTACAGTCATTCCAGTTCCC 58 33084316 33084335 CCATCTCTATCACCATAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl2 ENSRNOG00000014702 ENSRNOT00000019756 3 1 1 80 17 21412178 21414557 GATATCCGGGTAGCCAAGG 59 21414598 21414619 AAGAACAAAGAAGATCGTGTCC 59 NA Rattus norvegicus 81 Snrnp35 ENSRNOG00000001060 ENSRNOT00000001402 3 1 1 81 12 37532102 37538324 ACACTTAAGAACATGAGCGAC 59 37532041 37532060 CATCTGTACCATCGATGCTG 59 NA InUTR Rattus norvegicus 81 Olr810 ENSRNOG00000005398 ENSRNOT00000007150 2 1 1 60 4 72403598 72403617 CTCTTTGTCCTGATCTTGGT 57 72403637 72403658 GAAGAATCAGAGAATTTCCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000077024 2 1 3 80 X 71168672 71168920 CACCAAATCTGATCTCTTGCTG 60 71168613 71168631 CATTGAACCTCTGGGAGGG 60 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 3 2 2 93 17 9837119 9837137 AGTATTTCCTGGGCCAGAG 59 9836513 9837065 ACATGTTTGCTATAGGGATTCG 59 NA Rattus norvegicus 81 AABR07034729.1 ENSRNOG00000042193 ENSRNOT00000046465 2 1 1 80 11 85263562 85430541 CTTAATTTGTGCTACAGCAGG 58 85430583 85430601 GTTCCACCAGGTAATGTGG 58 NA Rattus norvegicus 81 AABR07024637.1 ENSRNOG00000029131 ENSRNOT00000048001 1 1 1 80 16 9843356 9847303 CTCAACTCATAGAAGGAAGCTC 58 9847343 9847362 GTCTTGGCTGAATCTGTGAC 59 NA Rattus norvegicus 81 Alyref ENSRNOG00000036687 ENSRNOT00000054955 1 1 1 80 10 109772511 109773893 ATATTCAGGAACTGTTTGCCG 59 109772451 109772470 TCCCTAAACTTCGTCCAGAG 59 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 2 2 2 80 16 48341956 48342372 AGTGGATTCAGGAACGAGG 59 48341894 48341914 TCCAGAAGATGTCAGTCATCC 59 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 2 2 2 60 10 103409096 103409116 TTTCTATGGATGAACCAGCCT 59 103411691 103411710 CCATTGTAGCCACTGTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910721 ENSRNOG00000057877 ENSRNOT00000073744 3 1 1 60 19 9024517 9024537 CATTTCAATGCACCTTCTCAC 58 9024556 9024577 GTTCTTTGGAAAGAGGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp36 ENSRNOG00000017836 ENSRNOT00000024010 1 1 1 80 9 16624467 16625484 CCTGAAGAAATCTGAGCAGC 59 16625527 16625545 AAACTCTCCAGCTTCTTGC 58 NA Rattus norvegicus 81 Fam53c ENSRNOG00000020261 ENSRNOT00000027499 3 1 1 83 18 27562827 27567170 CAGCTTGTGTCTGAAGGTG 59 27567217 27567235 GTAGCTGAAGTTGAGGCTG 58 NA Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 1 2 2 81 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567343 49567361 TAGTCGTTGTTGACATGCC 58 NA Rattus norvegicus 81 Mir187 ENSRNOG00000035521 ENSRNOT00000053644 2 1 1 61 18 16390571 16390589 GATCCTCAGGCTACAACAC 58 16390528 16390546 CTGCAACACAAGACACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6b ENSRNOG00000026936 ENSRNOT00000037191 1 1 1 142 20 5055999 5056017 CTAGAGCTGCTACTGAGCG 60 5055722 5055893 GAATACTCGGATCCGTGGG 60 NA Rattus norvegicus 81 Sh2d4a ENSRNOG00000013541 ENSRNOT00000018543 1 1 1 80 16 23085276 23085710 TGGTGGAATATCACAAGGAGG 60 23085216 23085235 GCTTGTCTTGTTGACCACAG 60 NA Rattus norvegicus 81 Atrnl1 ENSRNOG00000017406 ENSRNOT00000023414 2 1 1 80 1 278620751 278620771 ACACTCATAATGACACTTCCC 58 278620810 278629804 CATCACAAGCTATGTCATATGC 58 NA Rattus norvegicus 81 LOC100912436 ENSRNOG00000011399 ENSRNOT00000003628 1 1 1 60 1 8465515 8465533 ACAGACTACGAAGGAGCAG 59 8465473 8465494 ATTCCTCTTTCACCAATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181c ENSRNOG00000035569 ENSRNOT00000053692 2 1 1 67 19 25290297 25290315 GAACTTGCCAAGGGTTTGG 60 25290248 25290266 CGATGGTTTGTCTGAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif3c ENSRNOG00000011394 ENSRNOT00000015820 3 1 1 80 6 27794581 27813450 CCAGCTGGAGTGAATAACAG 58 27813492 27813511 AGCATACTGGCTGATAGGTC 59 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 2 1 3 60 1 198899310 198899329 CGGAGATGGGTAACATTCCA 60 198895797 198895819 CTTCCTTCTCTTCATTCTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000085954 3 1 3 64 1 199060238 199060256 ATACATCTGTGCTGACTGC 58 198895473 198895492 GTATGACTTGGTGCTGAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Vwa1 ENSRNOG00000018338 ENSRNOT00000024897 1 1 1 80 5 173220149 173220167 AAGCACCTACACTTTGTGG 58 173218464 173220106 CTGCATCGCATCAATAATGG 58 NA Rattus norvegicus 81 Elfn2 ENSRNOG00000007934 ENSRNOT00000010609 1 1 1 60 7 119895690 119895710 AAGAACAAGAAGGAGATCGTG 58 119895650 119895668 AGAAGGTGTACTCGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 3 2 2 83 6 136393197 136394309 CTTGTAAGCGGAGCTACCT 59 136394355 136394374 CTGGTTGTTGGAAAGACGAC 60 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 1 2 2 96 10 70328334 70332639 ATTTCAAGTGTCAGCAGACTG 59 70328258 70328282 CTGGCTTATTAAGTTCTCTAGTCTC 59 NA Rattus norvegicus 81 Mtcp1 ENSRNOG00000024071 ENSRNOT00000033663 2 1 1 109 18 411786 411804 CACTGTGAGGGTGTCTACC 59 411579 411597 CCCAGAGGAACTGGAACTC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 3 1 2 80 7 117000763 117001091 TGAATGAACTGGGATGCTG 58 117001135 117001153 ATTTGTCAACCCATGGCTC 58 NA Rattus norvegicus 81 Prr5 ENSRNOG00000012475 ENSRNOT00000016679 3 1 1 80 7 125588664 125595080 CCACCTGGAACAGTATCCA 59 125595123 125595142 TGAGGATGAAGAGCTCTTGG 59 NA Rattus norvegicus 81 Srf ENSRNOG00000018232 ENSRNOT00000061430 2 1 1 80 9 16744687 16744872 GTTCAGCTTCACCAGATGG 59 16744916 16744934 CAAGTTCACCACCTGTAGC 59 NA Rattus norvegicus 81 Nol8 ENSRNOG00000046968 ENSRNOT00000073035 1 1 1 80 17 14568522 14568540 CGGTTCCTGAGAAAGAGAC 58 14568120 14568480 TCCAGAATAAGTCAGAACCAC 58 NA Rattus norvegicus 81 Dvl3 ENSRNOG00000001708 ENSRNOT00000002323 3 1 1 81 11 84059527 84059546 CATTGGCTCCATCATGAAGG 59 84059370 84059484 CTCATTTACCTGCAACAGCA 59 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 3 2 2 80 12 39590264 39590985 GGATTACAATGAGGCGAAGG 59 39591028 39591046 ATCTTCTCTACCAGGCACG 59 NA Rattus norvegicus 81 Eif4a1 ENSRNOG00000030628 ENSRNOT00000049048 1 1 1 80 10 56275233 56275412 CGTCATCGAGAGTAACTGGA 59 56275172 56275191 TAAATACCACGGAGGAGGGA 60 NA Rattus norvegicus 81 Egln2 ENSRNOG00000020947 ENSRNOT00000028434 3 1 1 93 1 83971101 83971119 GTACGTGAGGCATGTTGAC 59 83970667 83971044 GCCATGCACCTTAACATCC 59 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 1 2 2 80 5 131933734 131935458 CAAGGTCACAGCTATAAACTTACG 60 131935494 131935515 GAGTGACATTCCACTATCACAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 9 18 60 1 43508711 43508731 TCAGAACACTAGGGAACATCC 59 43508753 43527499 TAGCTGGTGGTTAGTTCGA 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065640.1 ENSRNOG00000047622 ENSRNOT00000071078 3 1 1 119 6 138506945 138506963 AATCCCGACTGAGCATCAG 60 138506750 138506866 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 LOC100911859 ENSRNOG00000016141 ENSRNOT00000021589 1 1 1 113 7 144566002 144566020 AGAACACGAATCCCAGCTC 60 144567371 144567389 ATTTCGAATAAGGGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Tctn1 ENSRNOG00000028523 ENSRNOT00000030604 2 1 1 80 12 39806355 39808524 AATATGAGTATGGAGCCCTTCTG 60 39808563 39808582 ATGAAGTGAGAGGTGAAGGC 60 NA Rattus norvegicus 81 Olr812 ENSRNOG00000005407 ENSRNOT00000007163 1 1 1 60 4 72480882 72480902 GTGATGATGTCCTATGATCGG 58 72480921 72480942 TGATGACAGAGTATTGTAAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37b ENSRNOG00000001086 ENSRNOT00000001445 1 1 1 87 12 38020316 38020334 CAATCTAACAGCGCTTCCT 58 38020385 38021265 CTGCCATGTTCTCAGTGTC 59 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000049783 ENSRNOT00000073989 2 1 1 60 6 135550403 135550421 GTTATGAGCACTGAGTGGC 59 135550445 135550463 TCTTAACCATACCGAGCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb7 ENSRNOG00000012208 ENSRNOT00000016642 2 1 1 80 7 143824522 143827113 GGATGCTTACGACAACCTG 59 143824460 143824479 GACTCGAAAGAGATGCTGAC 59 NA Rattus norvegicus 81 Nfil3 ENSRNOG00000011668 ENSRNOT00000015525 1 1 1 176 17 12261220 12274492 CTGGCAACCTTGGATAACC 59 12274632 12274650 TGCATCAGAAAGGACCTCC 59 NA InUTR Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 2 2 2 64 1 90961116 90961139 CCTCTAATCTACTATGTCCCTGAC 60 90959613 90961094 ACCTGTCGAAGCAAATACTC 58 NA DesignNoJunction Rattus norvegicus 81 Irf2bp2 ENSRNOG00000049900 ENSRNOT00000075292 2 1 1 88 19 59501223 59501241 GTTCAAGAAAGAGCCAGCC 59 59500583 59501172 TCCTTGCAACTGCTTTAGAC 59 NA Rattus norvegicus 81 Arsa ENSRNOG00000012953 ENSRNOT00000017783 3 1 1 93 7 130450115 130450244 ATATTCCCATGACCAGGGTC 59 130450041 130450059 GATGGGAACTAGGCCTTGG 60 NA Rattus norvegicus 81 LOC100911171 ENSRNOG00000025516 ENSRNOT00000042522 1 1 1 80 7 106631413 106631432 AGTCTGGCATCAACTCTTCC 60 106631214 106631372 CCTTCCCACTAGTTGTCTCTG 60 NA Rattus norvegicus 81 Gpr19 ENSRNOG00000007126 ENSRNOT00000009341 1 1 1 93 4 168656606 168656624 CATCCTCCAAAGTCCTGTG 58 168641316 168656551 TTCCTCTTAGTTCTTCATGGG 57 NA InUTR Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 2 1 1 93 13 55870437 55870455 CTGTGAATGTAAGCTGGCC 59 55869175 55870385 AGAGAACCTTCTGTAGTAATCCTC 59 NA Rattus norvegicus 81 Prpmp5 ENSRNOG00000010485 ENSRNOT00000013943 3 1 1 81 4 166016272 166016290 CCTTGCTAGTCCTGAGCTC 60 166014356 166015219 TGCTCTAACTCTAACTGCTGAG 60 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299,ENSRNOT00000001301 3 3 3 80 12 36734559 36736088 ACCCTATGTCTACAGGGAG 57 36736131 36736150 CGGTTCTCTATGTAGGACAC 57 NA Rattus norvegicus 81 Fkbp1b ENSRNOG00000047143 ENSRNOT00000071784 3 1 1 81 6 29981936 29985517 CACTACACAGGGATGCTCC 60 29985560 29985580 TGCCAATTCTGAACTTGAAGG 59 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000078030 1 1 2 88 1 215536557 215536575 CTCAACTTCTGTTGCCTGG 59 215515826 215536505 AGACAGCCTTTCTTCCCTG 59 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 1 2 2 80 11 86672525 86674249 CAGGAGCATATAGAGGTTTACCA 60 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 Chchd6 ENSRNOG00000060248 ENSRNOT00000088753 1 1 1 80 4 121541574 121541592 TTTAAAGTGTCCAGGGCAG 58 121539901 121541532 CTCCTGTTGGAACTTCTTGAG 59 NA Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000074947 2 1 2 72 6 142676387 142676405 CTCCTGTCAGTAGCTGCAG 60 142635583 142635601 CAGGCTTCACTAGTTCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 3 2 2 80 13 68836905 68836923 CACCATGACCACAAAGGAG 59 68836210 68836863 CATTCTTTGTTGCCACTTCTG 58 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461 3 3 4 90 4 165176291 165176312 TCCAGACAATTACTGGATTGGA 59 165169861 165176243 GTTTGAGGCAAGTTTAGATGGT 59 NA Rattus norvegicus 81 Ccdc146 ENSRNOG00000012932 ENSRNOT00000017374 1 1 1 80 4 10404874 10404892 CACCGTAATCGAAGAGGAG 58 10404935 10406493 TGAACACCACTTTCATTCCT 57 NA Rattus norvegicus 81 Tmem173 ENSRNOG00000042137 ENSRNOT00000068386 1 1 1 80 18 28530743 28530763 GACACTTGAGGAAATTCTGGC 60 28530301 28530701 CCCTCTTCGGATTCTTGGT 59 NA Rattus norvegicus 81 Tmem173 ENSRNOG00000042137 ENSRNOT00000068386 2 1 1 80 18 28530308 28530711 CTCATTGTCTACCAAGAATCCG 59 28530249 28530267 TTCTTCTTGCCGAATGTGC 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 3 2 2 81 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000083046,ENSRNOT00000085609 3 2 2 80 8 117140434 117140454 CAACACCTATGAGCAGTTGAG 59 117140494 117140644 TCAATTACTAGCACCTGACCC 60 NA Rattus norvegicus 81 Mtx3 ENSRNOG00000023837 ENSRNOT00000061761 2 1 1 80 2 22430053 22430075 TGAATAGGATTCTCTTGACGAGG 60 22430113 22430230 TGGCATCTCTGTATATCTGGG 59 NA Rattus norvegicus 81 Klk11 ENSRNOG00000018742 ENSRNOT00000025055 2 1 1 81 1 99712271 99713918 TTATCTACAGAACCCAGGGA 57 99713962 99713980 GAGCAAGTGCAATGAATCG 58 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 3 2 2 80 1 280146534 280150070 AGATAGCAGTAGTCCTACCG 58 280146473 280146493 GTTACACTGGATACAGAACCC 58 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 2 2 2 95 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579102 12579951 TACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Tmem63b ENSRNOG00000019743 ENSRNOT00000026728 2 1 1 80 9 17719079 17719099 GAGAAAGTGAATGAGAAGCCC 59 17719138 17719293 GTCCTTTAGGATGATTGCTGTG 60 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 2 1 1 60 20 5078522 5078543 GCTACTTGGTAAAGGACTTAGG 58 5078563 5078582 GGTATCAACTACTTGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem121 ENSRNOG00000005174 ENSRNOT00000006872 1 1 1 60 6 137997549 137997567 GTGGCTACGCTATGATCCT 59 137997588 137997609 AAATAGAGCTTGATCTCCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 2 2 2 80 17 16370050 16370069 ATGACATTTGCCTTACAGGA 57 16370111 16372544 ACATGCTATTAGCACACCTG 58 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 3 2 2 80 17 16370053 16370073 ACATTTGCCTTACAGGAAGGA 60 16370111 16372547 GTAACATGCTATTAGCACACCTG 60 NA Rattus norvegicus 81 Apobec4 ENSRNOG00000028089 ENSRNOT00000036906 1 1 1 80 13 70157671 70164332 CTGGAGACAAAGCTGATCTG 58 70164373 70164393 ACTGTGGGTTAGATACTCCTC 58 NA InUTR Rattus norvegicus 81 AABR07013302.1 ENSRNOG00000055038 ENSRNOT00000041479 2 1 1 60 2 232373156 232373177 AGCAAGTTAAAGGCAAGATTCC 60 232373117 232373135 TGCTTGATGTGCTCAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 1 1 1 80 7 119182800 119182818 TTTGTTCACATGCTGAGCC 59 119181888 119182756 ATTGTTGATGGCTCTGACG 58 NA Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000078502 1 1 2 80 5 64790195 64790595 CTGGACTCAAGGAGGAGTG 59 64790637 64790657 TTCCATAACTGTCCATCACGA 59 NA Rattus norvegicus 81 Fth1 ENSRNOG00000022619 ENSRNOT00000030919 2 1 1 81 1 226032377 226032396 GGGAACATGCTGAGAAACTG 59 226032436 226032706 CGGTCAGGTTTCTTTATATCCTG 59 NA Rattus norvegicus 81 Gng12 ENSRNOG00000050231 ENSRNOT00000075400 2 1 1 106 4 97758061 97759630 CTCCATCGAAAGAATAAAGGTCTC 59 97759695 97759713 TTTCTGAGGTCGGTATGCC 60 NA Rattus norvegicus 81 RGD1566053 ENSRNOG00000013378 ENSRNOT00000017909 1 1 1 80 4 65684588 65686906 ATATCTGCACTTCAAGTGCC 58 65684527 65684545 AGATGGTGTTGAAGTTCGC 59 NA Rattus norvegicus 81 Tcte1 ENSRNOG00000019961 ENSRNOT00000027031 2 1 1 80 9 17855637 17855657 CTCTTTCTCTTCACCTACCGA 59 17851207 17855598 CAGTCTGAAGATCTTGAGAGTG 58 NA Rattus norvegicus 81 Trim45 ENSRNOG00000015347 ENSRNOT00000043146 1 1 1 84 2 203304810 203304831 CCAAGGCTATGAAGTATATGGG 58 203304874 203306459 TCTATGGAGATCTTCTCCCTG 58 NA Rattus norvegicus 81 AABR07034532.1 ENSRNOG00000001713 ENSRNOT00000002330 1 1 1 60 11 74865427 74865447 CTTTGATGACAACGACCTGTG 60 74865387 74865407 CGGCTCCTTACCTATACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841,ENSRNOT00000030327 3 2 2 82 1 28544118 28551388 GAGTTAGTTCAGCTAGAAGAGG 58 28551428 28551449 TGTTTGATCTCAACCAGATGTC 59 NA Rattus norvegicus 81 Ovch2 ENSRNOG00000019794 ENSRNOT00000026807 1 1 1 80 1 172018902 172018921 TGTCACACTTGGATGTAGAG 57 172017994 172018860 AGAATTTCCCAACGAGTCTG 58 NA Rattus norvegicus 81 RGD1565498 ENSRNOG00000028782 ENSRNOT00000043581 1 1 1 81 7 63928431 63933670 AGCTCTAGATTTCACCACCC 59 63933714 63933732 TGAGGAGATGACTCAGCAC 59 NA Rattus norvegicus 81 RGD1565498 ENSRNOG00000028782 ENSRNOT00000043581 2 1 1 81 7 63928368 63928387 ACCCAGAAGTTCATCAACAC 58 63928430 63933669 GGTGGTGAAATCTAGAGCTG 58 NA Rattus norvegicus 81 Mcur1 ENSRNOG00000017988 ENSRNOT00000024206 1 1 1 80 17 24173778 24173796 GGTCAAGATTACGGAGACC 57 24173188 24173735 TGCTGAAGAGTGATTTCCTG 58 NA Rattus norvegicus 81 AABR07071393.1 ENSRNOG00000046440 ENSRNOT00000072842 1 1 1 60 8 113704440 113704458 AGAGATCTGGGAGCATCTG 58 113704398 113704417 GTCAACTTCAAAGCAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef1b2 ENSRNOG00000024186 ENSRNOT00000034740 1 1 1 80 9 69955808 69955827 AGACATGACGAAACTTGAGG 58 69955868 69955985 ACTGGAACCAATTTAGAGGAG 57 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 3 1 1 80 X 156414532 156414553 CTTTCTACCTACTTAGACCCTG 57 156412470 156414492 CTCAATGCTTAGCTTGTCCT 58 NA Rattus norvegicus 81 Mbd6 ENSRNOG00000006209 ENSRNOT00000008854 3 1 1 88 7 70576051 70576281 ATTCTTCTCCTGGAGAGGGA 59 70575982 70576000 AGGAACTCGACAAGAAGGG 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 2 1 1 60 8 76479838 76479859 GGGAAATAGCAGAATTTGTGG 58 76479798 76479818 TTCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Rps8 ENSRNOG00000054626 ENSRNOT00000081747 2 1 1 82 5 136022508 136023008 CCAACACTAAGATTGGCCC 59 136022444 136022462 ATCCAATCTCAGAGCACGA 59 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298,ENSRNOT00000060218 2 2 2 81 17 27571521 27571542 AGGAGTTTGTTTGCAAGTATGG 60 27560364 27571481 ACACAGCAAATGTCACATCTC 59 NA Rattus norvegicus 81 Ssbp2 ENSRNOG00000016213 ENSRNOT00000021857 3 1 1 80 2 20681831 20686158 AGTCCAGCAGATTCAACCA 59 20686201 20686220 ATTAGGTCTGTTAGGCCCAG 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 1 2 2 80 19 10756663 10756684 AAGTACATTGAAGAGCAGTTGC 60 10756079 10756622 TTTATGGTGCTGCAGTGTG 59 NA Rattus norvegicus 81 Fam171a2 ENSRNOG00000021041 ENSRNOT00000028563 1 1 1 86 10 90385255 90385788 ATCTACTACTGCCGACGAC 59 90385187 90385205 ATCTCGTTTGTTGTCCGAG 58 NA Rattus norvegicus 81 Mbd3l2 ENSRNOG00000026629 ENSRNOT00000029911 3 1 1 89 8 17928394 17929082 CCTTTGCTAGGAAGACTCAC 58 17929134 17929152 GGTCTTTGTCTTGCTCTGG 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450,ENSRNOT00000067176 1 3 3 81 12 41205373 41205391 GAGGAACTTCCTGAAGCAG 58 41205435 41208790 CTCCTTACACAGTTGGTACC 58 NA Rattus norvegicus 81 Vom2r1 ENSRNOG00000048575 ENSRNOT00000075323 3 1 1 80 10 111552461 111561235 GGAGAAACATTGGTTCCCTC 59 111552400 111552419 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Zfp14 ENSRNOG00000047379 ENSRNOT00000075435 2 1 1 83 19 14490115 14493854 ATCTCACTGGATCTGGAGTC 58 14493896 14493918 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 3 2 2 80 5 135021957 135024399 ATCTACTCATCTTTCTCTGTGG 57 135021898 135021916 CCTTCAGGAAAGATGTCCC 58 NA Rattus norvegicus 81 Bcl7c ENSRNOG00000018916 ENSRNOT00000025618 1 1 1 121 1 199157654 199157770 GGATCTCAATGATGAGAACAGC 59 199157554 199157572 GAGGTCCAGTTGGTGATCC 60 NA Rattus norvegicus 81 Aldoart2 ENSRNOG00000030869 ENSRNOT00000043224 3 1 1 60 6 76350224 76350242 GTCACTTTCCTGTCTGGAG 58 76350264 76350284 TGATAGCATTGAGGTTGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc41 ENSRNOG00000013642 ENSRNOT00000018506 1 1 1 80 5 134946732 134947285 CCTTCAAGAGATTACCTTCTCC 58 134947326 134947344 ATAGCAGCAACCATCTCAG 57 NA Rattus norvegicus 81 Clec14a ENSRNOG00000022697 ENSRNOT00000030706 2 1 1 60 6 79305256 79305274 CAGGAAGTATGATGCCCAC 58 79305214 79305234 TCGAAAGTCAGAGAAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817,ENSRNOT00000012222 1 2 2 80 4 7300754 7300773 CAAGAACTTCACCCTGAAGC 59 7300509 7300711 GCAACTGTGGTCTTTCCTC 59 NA Rattus norvegicus 81 Glipr1 ENSRNOG00000026644 ENSRNOT00000005399 3 1 1 80 7 54769070 54769088 GCCCAAAGGATGACAAGTG 59 54768026 54768141 GATAATCAGCAGAGTGACGTG 59 NA Rattus norvegicus 81 Olr959 ENSRNOG00000059839 ENSRNOT00000050153 2 1 1 60 7 6970725 6970746 GTGTAGCTGTTCTCAATACCTC 59 6970686 6970707 CTTAGGGTGTAAATGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr959 ENSRNOG00000059839 ENSRNOT00000050153 3 1 1 60 7 6971412 6971433 TAATTATCTTCCTCACCCTGCT 59 6971373 6971393 CGGAGAAAGAAGTACATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmg4 ENSRNOG00000039265 ENSRNOT00000060132 1 1 1 110 17 31411728 31411746 CCACTTTCATGTCATGCGG 60 31408981 31411654 ACAGGGATGGAATCGAAGC 60 NA Rattus norvegicus 81 Cpa6 ENSRNOG00000005655 ENSRNOT00000007491 3 1 1 80 5 8467514 8469679 CTTGATTATACAGCTGGGCA 58 8469721 8469740 CATTCTCTTGCATGAATGCC 58 NA Rattus norvegicus 81 Dennd2a ENSRNOG00000026748 ENSRNOT00000034549 3 1 1 80 4 67245780 67248254 TCGATTCCTCAGACAGATGG 59 67245719 67245737 TGCTCCAGAATGTGTTCCA 59 NA Rattus norvegicus 81 Agfg1 ENSRNOG00000015619 ENSRNOT00000021309 2 1 1 80 9 88641537 88641555 CCCTGAAATCTCTGTTGGG 58 88641599 88642232 GACCTACAACTGGTGACTG 58 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594 3 1 2 102 7 60320803 60320821 AGAGACATTCTCAGCCTGG 59 60320887 60322020 GCAGCAGAGATGTATGGAC 58 NA Rattus norvegicus 81 Mroh6 ENSRNOG00000032231 ENSRNOT00000048363 1 1 1 80 7 116916754 116916772 AGGAGATGGTTACTGTGGC 59 116916499 116916711 TTGGATATCGGTGAACCAGG 60 NA Rattus norvegicus 81 Krtap3-1 ENSRNOG00000012544 ENSRNOT00000016752 1 1 1 60 10 87484811 87484829 TTCCTCTGACAAGTCCTGC 59 87484769 87484787 GATCTCATGTGGGCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126,ENSRNOT00000014034 2 2 2 80 2 263896109 263940271 CCGCTATTGATAATGATGCTG 57 263940313 263940331 CTTCTCCTTTCCCATCTGC 58 NA Rattus norvegicus 81 LOC100911617 ENSRNOG00000048996 ENSRNOT00000075181 3 1 1 60 2 213421038 213421056 GATTAGCGACCAGATGCTG 59 213420996 213421014 ATAGTGCTGCTTCACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 1 2 2 80 4 66107583 66107603 CAATCCACTACATGCGATCTC 59 66107643 66110847 CCAGGTATTCCCTGTTATCCA 59 NA Rattus norvegicus 81 Rn60_1_1373.2 ENSRNOG00000051334 ENSRNOT00000076469 2 1 1 60 1 136285227 136285249 CCCTACAGTTAGATACTACACCA 59 136285269 136285287 GAGTTCTTTCAGGCTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 2 1 1 83 7 70327779 70327797 AGAAGGTGATCGAACTGGG 59 70321458 70321478 AATCAGTGATGGTAACATCCC 58 NA DesignNoJunction Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 2 2 2 80 2 205648807 205652619 TCCCATTGAAGAGGTGCTG 60 205653518 205653536 GGCATGATCTCATCCTCGT 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000085724 2 1 2 81 20 4024440 4024458 TGGAGACGTCTACAGTTGC 60 4024502 4025448 ATATTCAGACTGAGCCACCC 59 NA Rattus norvegicus 81 Trib2 ENSRNOG00000004110 ENSRNOT00000005774 1 1 1 182 6 41034347 41039404 GGTGTGCAAGGTGTTTGAG 60 41034183 41034201 CTCAGCTTCTTGCAAGTGC 60 NA InUTR Rattus norvegicus 81 Tor1aip2 ENSRNOG00000024849 ENSRNOT00000050734 3 1 1 80 13 73730459 73731453 CTCTGGACCTATGGTTCCA 58 73731495 73731515 GGAGGAATAGTAGCTGTTGAC 58 NA Rattus norvegicus 81 AABR07007544.1 ENSRNOG00000048330 ENSRNOT00000073727 1 1 1 82 2 17939769 17939792 CCTTCAAGAATTACAGGAGAACAC 60 17939686 17939705 CCTTTACTGGCATGCTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625,ENSRNOT00000092104 3 3 3 80 5 12467697 12473131 GAGGAGAAAGAGAAAGACCCT 59 12467637 12467656 ACTTGGAATAGAGGCCTCTC 59 NA Rattus norvegicus 81 Uqcrfs1 ENSRNOG00000018281 ENSRNOT00000024609 2 1 1 89 17 35678245 35681455 CCTGAATGTTCCTGCTTCTG 59 35681505 35681525 CTATCTAGAACTTCAGCACGG 58 NA Rattus norvegicus 81 Uqcrfs1 ENSRNOG00000018281 ENSRNOT00000024609 3 1 1 90 17 35678245 35681455 CCTGAATGTTCCTGCTTCTG 59 35681506 35681526 GCTATCTAGAACTTCAGCACG 59 NA Rattus norvegicus 81 Jam2 ENSRNOG00000042848 ENSRNOT00000046973 3 1 1 80 11 24266396 24266414 TCCTCCAGACTAGAGTGGA 58 24266457 24268549 TTTAAAGTCGCCTTGGAGAG 58 NA Rattus norvegicus 81 RGD1566264 ENSRNOG00000036836 ENSRNOT00000051929 1 1 1 80 7 144886737 144886866 ATCAAGAAACTCGGGTCAC 58 144886675 144886696 CTTGACAAAGTACATGTTCCTC 57 NA Rattus norvegicus 81 AABR07026893.1 ENSRNOG00000050796 ENSRNOT00000072930 1 1 1 80 17 3729725 3729743 ATCCCTTCCAGAAGAAGCT 58 3729468 3729684 CTTCCCAATTAAAGCCTATAGC 57 NA Rattus norvegicus 81 Sept2 ENSRNOG00000017952 ENSRNOT00000024261 1 1 1 80 9 100651284 100651303 TACAGGAAGTGACCCAAGAC 59 100651345 100653485 CATTCTCTACTTTCCTGCCG 59 NA Rattus norvegicus 81 Lppr3 ENSRNOG00000027940 ENSRNOT00000031315 3 1 1 91 7 12661716 12661735 TACTCATGCCATCCTGTCAG 59 12661920 12662023 TGAAGTACATCGAAACGTAGAC 58 NA Rattus norvegicus 81 Nup153 ENSRNOG00000001456 ENSRNOT00000001979 1 1 1 80 17 18375720 18375738 CATACTGCCATCAGCTCCA 60 18375780 18375882 TGAAGAATTCCCAAGTGAGGT 59 NA Rattus norvegicus 81 Pycard ENSRNOG00000019675 ENSRNOT00000026699 1 1 1 81 1 199438838 199438859 CACAATGACTGTGCTTAGAGAC 59 199438548 199438796 CACAGCTCCAGACTCTTCC 60 NA Rattus norvegicus 81 LOC100911625 ENSRNOG00000048365 ENSRNOT00000005535 1 1 1 80 9 20257118 20257619 CGGAACTATCCTGTGGTCTC 60 20257661 20257680 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 LOC100911426 ENSRNOG00000032062 ENSRNOT00000043603 1 1 1 67 1 66963283 66963303 GCCTATTAAGAGATGCAAGCC 59 66963328 66963782 ACCTTAGAACTGGATCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cggbp1 ENSRNOG00000000718 ENSRNOT00000000909 1 1 1 80 11 1909367 1911669 GAAATTAAGCCGAAGAGCCT 58 1911710 1911730 TTAGAACGATTTCTAGCAGGC 58 NA InUTR Rattus norvegicus 81 Defb49 ENSRNOG00000039651 ENSRNOT00000060805 3 1 1 67 9 24451381 24451399 CTCGACCTGTTGAAGACAG 58 24446415 24446434 TTGCCTTTCTTGAGAAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 2 3 5 80 4 164530394 164530413 GGCATGAATGTAAACAGACC 57 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Cytl1 ENSRNOG00000028108 ENSRNOT00000035427 3 1 1 84 14 77808340 77809994 GAGCCTGAGGACTCATGTG 60 77808068 77808086 AGTCTCGAAGCTTGGTCAG 59 NA Rattus norvegicus 81 Sost ENSRNOG00000020805 ENSRNOT00000028238 1 1 1 80 10 89899933 89899952 GAACAACCAGACCATGAACC 59 89897496 89899890 TACTCGGACACGTCTTTGG 60 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 2 1 1 80 6 1352515 1352535 CTCCTAGTCAACTGTACCGAG 59 1345860 1352473 CCACATATACCTCTGCCCA 59 NA Rattus norvegicus 81 RGD1563405 ENSRNOG00000009002 ENSRNOT00000011900 2 1 1 60 5 17399642 17399662 ACGCCACATATGATAAGACTC 58 17399602 17399620 TAGGGCAGGTCTAGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2aip ENSRNOG00000022736 ENSRNOT00000030519 3 1 1 90 16 47666981 47667568 GGATATCGAGTAGCAATGAAGG 59 47667619 47667637 CCATGATCTCGCTCAACTG 58 NA Rattus norvegicus 81 Zfp951 ENSRNOG00000043048 ENSRNOT00000044065 1 1 1 80 14 6284039 6284057 TGGATCCTTCCCAGAAGAG 58 6283780 6283996 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905,ENSRNOT00000081945,ENSRNOT00000040566,ENSRNOT00000045020 1 5 5 80 2 258825657 258828090 TACCTTAAGGCCATTGTGGA 59 258825596 258825617 TGAGGAATTCATGTGTTTCCAG 59 NA Rattus norvegicus 81 Sqle ENSRNOG00000009550 ENSRNOT00000012883 3 1 1 80 7 99617248 99617347 TCATTATGAAGGATGCACCA 57 99617389 99617408 GGTAGATGAGAACTGGACTG 57 NA Rattus norvegicus 81 Colca2 ENSRNOG00000042165 ENSRNOT00000065744 3 1 1 82 8 55675209 55676655 ATAACCTGCATCTGATGCCA 60 55675146 55675164 CTGAGCTGGTGAGTAGCTG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 1 2 2 80 1 127589305 127589324 CTTGCTCCATTTCTCTGCAG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 2 2 2 88 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932498 204938635 GACATTACGCTATGCACCTC 59 NA InUTR Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000090717 1 1 2 80 4 61936936 61939862 GAAGAGCAGTATCTCAGACGA 59 61939904 61939922 TTCTCATCCAACTCCAGCA 59 NA Rattus norvegicus 81 Phf12 ENSRNOG00000009566 ENSRNOT00000056234 1 1 1 80 10 64820768 64821850 CATCATCAGATGGCAAGGTC 59 64820707 64820726 TAGAGTTGGCTGGGAAAGAG 59 NA Rattus norvegicus 81 Crls1 ENSRNOG00000021273 ENSRNOT00000028900 1 1 1 80 3 125517883 125517907 GAACACTAGCTAAGTACTTCAATCC 59 125517944 125519686 CTGCTGTATTGACCTTGCTG 59 NA Rattus norvegicus 81 AABR07051626.1 ENSRNOG00000029562 ENSRNOT00000040689 3 1 1 81 3 18244370 18244411 AACCAGGACAATGCATCCA 60 18244307 18244326 TCAATGGTGAAGTCTGTCCC 60 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 1 2 2 80 5 64294799 64294818 CAGCTCTACTTCCTTCAGAG 57 64294861 64303955 AACAGCAAAGGACTCTTGG 58 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000046936 ENSRNOT00000074272 1 1 1 91 3 19128439 19128631 AGTATCACAGTCTTAGTGTCCAG 59 19128682 19128700 GTGATGGTGACCTTCTCCC 60 NA Rattus norvegicus 81 Rgsl2h ENSRNOG00000026940 ENSRNOT00000025544 2 1 1 91 13 71282575 71282593 GAAGACCAGAACGGAAACC 59 71282296 71282520 GTTGCATATCAGAGCCCTG 58 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 2 2 2 80 7 130334185 130334203 TAGTGCAGGAAGATGGGAG 59 130334247 130334344 CATCCAGTGACAGGAACTC 58 NA Rattus norvegicus 81 LOC497940 ENSRNOG00000015975 ENSRNOT00000021402 2 1 1 80 10 56508619 56509660 GACACCAATGATTCTGCTACC 59 56508559 56508578 TTGTAAAGTAGCCAGCTCCC 60 NA Rattus norvegicus 81 Mroh9 ENSRNOG00000003698 ENSRNOT00000004931 1 1 1 80 13 80961738 80968716 GAGAGTCAAGAAATACCCGAG 58 80961678 80961696 TCATGGGAACAGAAGAGGG 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 2 1 1 60 6 142059844 142059862 TTATGCAACCGAGTATGCG 58 142059802 142059823 GGAATCATCTCTTGAGATGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r53 ENSRNOG00000007730 ENSRNOT00000010203 1 1 1 80 7 13177248 13183153 TTTCCAACGAGACAGATGTG 58 13183196 13183214 TCAGGCAGTGACTCTTCTC 59 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000065801 2 1 2 80 13 74456764 74462021 TTCAACACCAAAGACGCTG 59 74462061 74462083 GTAGGAAGAGTACCACACTTAGG 60 NA InUTR Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 3 3 3 83 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942058 144943888 GCCATTCTCCATGGAAACTG 59 NA Rattus norvegicus 81 Sarm1 ENSRNOG00000010244 ENSRNOT00000013639 3 1 1 80 10 65757377 65757396 TTTGCTTCTACGACTCACAG 58 65757207 65757334 CTAAAGAACCTCTTGCGGG 58 NA Rattus norvegicus 81 Rapgef5 ENSRNOG00000005271 ENSRNOT00000007112 1 1 1 80 6 145578453 145578474 ATATCCGATCCTTGAGAAAGAG 57 145578514 145581512 GAGTATAGGGCAAGAGTGTG 58 NA Rattus norvegicus 81 Wdr45 ENSRNOG00000009749 ENSRNOT00000013369 1 1 1 80 X 15623454 15623472 CTCCAAGGACAAACTGGTG 58 15623245 15623411 ATCACAATCTTGTCATGGCG 59 NA Rattus norvegicus 81 Smg7 ENSRNOG00000027962 ENSRNOT00000044235 2 1 1 80 13 70282758 70282778 GATACAGAAACCAGACTAGCC 58 70281675 70282716 TGTAAGGCTGACCATTGGA 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000083401 2 2 3 80 12 37377764 37377782 TGTCATGTTCCTGTTTGCC 59 37377340 37377722 ATCCTAAGGATCTCCTGTGAC 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000085270,ENSRNOT00000078412 1 2 4 114 20 12858049 12858067 TTCATTTGCTGTCCAAGCC 59 12856519 12857385 ATTGTTGTCTGGGACCTGG 60 NA Rattus norvegicus 81 Ces5a ENSRNOG00000025710 ENSRNOT00000049452 3 1 1 80 19 12136125 12136148 CTACGATCAAACTGTACTGAAGC 60 12136190 12136209 TCTGTCCAATTCCACTCTCG 60 NA Rattus norvegicus 81 Nostrin ENSRNOG00000006611 ENSRNOT00000067161 2 1 1 80 3 55423062 55424387 CAAGAGACAAAGAAGGCCTG 59 55424428 55424448 CTTTCTGGCTCTTAGCATCAG 59 NA Rattus norvegicus 81 Ppm1j ENSRNOG00000012481 ENSRNOT00000016833 2 1 1 80 2 207267829 207267848 GACCACAACCTTAAGGTCTG 58 207267888 207268021 ATCATACACTCGTACTTCAGGA 59 NA Rattus norvegicus 81 RragB ENSRNOG00000050535 ENSRNOT00000075249 2 1 1 80 X 19339715 19339734 ACTTTGCTGCTTTCATTGAC 58 19338727 19339672 CTGCAGAAGGAATGGATGG 58 NA Rattus norvegicus 81 Rp1 ENSRNOG00000008807 ENSRNOT00000047093 1 1 1 81 5 15044131 15051301 AAGGTTCAAGTTCTGGTCTC 58 15051344 15051363 CTTCAGAAGAAGTCAGACGA 57 NA InUTR Rattus norvegicus 81 Pgrmc2 ENSRNOG00000014051 ENSRNOT00000018796 3 1 1 64 2 127988904 127988922 TTCGAGAGTGGGAAATGCA 59 127987335 127987353 CCCTGGCTTTAGGAGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp110 ENSRNOG00000031328 ENSRNOT00000026298 2 1 1 81 1 65754795 65754817 CTCAGTTAGAAGAAGCAGAAGAC 59 65747377 65754754 GAAGGCCCAGAACATTCTG 59 NA Rattus norvegicus 81 Oaf ENSRNOG00000009243 ENSRNOT00000012826 2 1 1 126 8 47513965 47513984 TTAACTTCAGTCAGGGAGGC 60 47512649 47513876 ACAGAACTGTCCACACCTC 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315 3 1 2 80 16 10945655 10945674 GTCATGACCTGGAAGATGGA 59 10944041 10945613 GTCTCTTGGTCTTGGGAGTC 60 NA Rattus norvegicus 81 rno-mir-3543-1 ENSRNOG00000050253 ENSRNOT00000062188 2 1 1 60 6 133716290 133716308 TGATGGTTCAAACCACGAG 58 133716248 133716266 GTTTGAACCACAGCTCGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir487b ENSRNOG00000036489 ENSRNOT00000054597 3 1 1 60 6 133877135 133877154 GAGTGGTTATCCCTGTCCTC 59 133877176 133877195 AAAGTGGATGACCCTGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp7 ENSRNOG00000009686 ENSRNOT00000012975 3 1 1 80 5 57360781 57369164 TCTTGATGGTGTTTGGCCT 60 57360719 57360739 CCAAGTTGACACCAAGATAGC 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 2 2 2 80 6 91891993 91892013 AGATGTGGACCTCAATAGCTC 59 91888218 91890318 CTGAAGAAAGACTTTGAGTGTGG 60 NA Rattus norvegicus 81 Clrn2 ENSRNOG00000027195 ENSRNOT00000022589 1 1 1 80 14 70154304 70160387 CAGTCCCAGTTTACAATCTTCC 59 70154245 70154266 GAAGAGGAGCAAGAGAATAGTG 58 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 3 2 2 84 9 19452868 19454541 TTAGGTGACCATGGCTATGAC 60 19454587 19454605 TGTAGCCTTTCCTGAAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Grhl3 ENSRNOG00000029427 ENSRNOT00000065247 1 1 1 80 5 153908888 153910567 CAAGGAAAGAAGTACTACCACAG 59 153908830 153908849 AAATTTCATGAGGTGCGTGG 60 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000039761 ENSRNOT00000060991 1 1 1 80 10 12467936 12467955 CCATGTACTTCTTCCTCAGC 58 12467604 12467893 GGGATGATGTTGTCTTGGG 58 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000059465 ENSRNOT00000086907 1 1 1 60 17 34746557 34746577 AATACTCAGCAGTGTTAGAGG 57 34746599 34746617 TCATTCCTCTCGGCATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 3 1 2 123 16 85305322 85305427 GAGTCAAACTCCCAACACC 58 85299027 85299045 ACTGGAGTAGCTGAGAGGT 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660,ENSRNOT00000080031 3 2 2 80 17 29210882 29311107 CAGCTTGTCAATTCAGCTGG 60 29210821 29210839 GAGGACCATAGCCAGTCTC 59 NA Rattus norvegicus 81 Olr1060 ENSRNOG00000031181 ENSRNOT00000051063 1 1 1 60 7 9173872 9173892 TGGGTAATTGGGTTCTTAGTC 57 9173832 9173851 AGAAATCCAGTTTGAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog6 ENSRNOG00000013660 ENSRNOT00000018385 3 1 1 80 2 142220741 142220759 GCTCTTACAAGAGGAGGGC 60 142220604 142220697 GTCTCCCACATACCTCAGC 60 NA Rattus norvegicus 81 Il17rc ENSRNOG00000027376 ENSRNOT00000037788 3 1 1 81 4 145433142 145433163 TTGGCTTCTTACTATACTGGGA 59 145433204 145433424 ATGTTCTGAGGTCCAGTCAG 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 3 1 2 118 16 81231349 81233292 AGATATCAAGAGTGCATGAGG 57 81226495 81226513 GTGCCCTTCTTATCACAGG 58 NA Rattus norvegicus 81 LOC100912604 ENSRNOG00000046379 ENSRNOT00000071712 1 1 1 80 3 14589844 14590602 GATCGATGAGGATGTCATTGAG 59 14590643 14590661 AGAGTCAGCTTTGAGCTGG 60 NA Rattus norvegicus 81 Hrsp12 ENSRNOG00000005437 ENSRNOT00000007430 2 1 1 80 7 73259411 73260202 CTGTGACTTCACTAATGTGGTG 59 73259352 73259373 TTGTAGATCTCATTGACAGTGC 59 NA Rattus norvegicus 81 Paqr8 ENSRNOG00000012830 ENSRNOT00000029696 2 1 1 135 9 27047649 27049825 TCTACAAAGGTTGTCCTACTG 57 27049922 27049940 TTCTTCCAGAATCTTGGGC 57 NA InUTR Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 2 2 2 80 8 76545393 76560133 ATATTGAGGTTCTCCAGGAGC 59 76545333 76545353 TCTCCAGTGTCTTTAAGGCAG 60 NA Rattus norvegicus 81 Capza2 ENSRNOG00000056207 ENSRNOT00000090451 3 1 1 80 4 44955359 44955380 TGGAGAACTTCAGTAGAAACTG 58 44955421 44956170 TTTGCCATACACAGTGCAG 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 2 2 2 101 1 87928653 87929974 AGACCTGACTGACAACCAG 59 87928570 87928588 TTAATGCTCTCCTCCTGGC 59 NA Rattus norvegicus 81 LOC684238 ENSRNOG00000021704 ENSRNOT00000071201 1 1 1 80 5 58760837 58760856 TTGAGGAGAACAAATGGAGG 58 58760899 58761259 GTACATCTGCTGTAACGGG 58 NA Rattus norvegicus 81 Zfp280b ENSRNOG00000028441 ENSRNOT00000081733 3 1 1 60 20 13570429 13570447 TCGAGTCTAGCAAGTCCAG 59 13570387 13570408 TAAGCAACAGAGTCAAACTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf7ip2 ENSRNOG00000025522 ENSRNOT00000039429 2 1 1 82 10 5511861 5511879 TGGAGATCCTGAACCAGTC 58 5508323 5511818 CTTCTGATTATGGCCATTTGGA 59 NA Rattus norvegicus 81 Pkdrej ENSRNOG00000029591 ENSRNOT00000041057 1 1 1 60 7 126699423 126699441 CAGATGTGGTTGGGTTCAG 59 126699381 126699400 GCAATCTCTATGGCGTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabpa ENSRNOG00000053205 ENSRNOT00000086946 3 1 1 80 11 24316552 24316571 GGCAGCTAAAGTTCAAAGGT 59 24316612 24316904 TGACCATTGTTTCCTGTTCTG 59 NA Rattus norvegicus 81 Lsm14a ENSRNOG00000021133 ENSRNOT00000078585 2 1 1 83 1 90231375 90231393 GACCTCACTGTTTGTGAGC 59 90227595 90231330 TGACGAACCTAGTGAAGACTG 60 NA Rattus norvegicus 81 Lgals2 ENSRNOG00000008539 ENSRNOT00000011750 1 1 1 80 7 120071722 120072611 TGATGTTAACAGCTTCACCA 58 120071661 120071679 GATTCATTGAAGCGAGGGT 58 NA Rattus norvegicus 81 LOC302157 ENSRNOG00000047443 ENSRNOT00000075166 2 1 1 60 2 153140728 153140747 GTCCATTCTCAAGCTCACTG 59 153140687 153140705 TCCCTATGACCATATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxna4a ENSRNOG00000013072 ENSRNOT00000017536 2 1 1 80 4 59473483 59476631 ATATAAGACCCTGGTCCTGAG 58 59473423 59473442 TCACAGTTGAGGATCTTCAC 57 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 2 2 2 80 2 22348104 22349767 GGAAGATAGCAACAATGATGGA 59 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Arglu1 ENSRNOG00000024142 ENSRNOT00000057347 1 1 2 134 16 86607389 86607407 GACAGAGACAAGCTGAGCT 59 86609771 86624235 GTTCTTCAGCCAGTTTGGC 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 1 2 2 80 1 83113465 83114891 CATGTCACAGAGAAAGTCCA 58 83114933 83114952 TTTGGTACGATCATCAAGGG 58 NA Rattus norvegicus 81 Olr885-ps ENSRNOG00000028911 ENSRNOT00000051296 2 1 1 60 7 16010529 16010547 ATTCTACTGGGACTGACGG 59 16010487 16010510 GAAACAGAAAGGTGAAGATCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl7 ENSRNOG00000006992 ENSRNOT00000009431 2 1 1 80 5 2634676 2635025 CAGAATCCGAGGTATCAATGGA 60 2635066 2635084 CCATTGAAGATCTGCCGGA 60 NA Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 2 1 1 80 11 16878158 16878179 GCAAGGAAGTAGAAGTGAAACC 60 16874290 16878123 GTGGGAATATCAGTTCTGAAATCTG 60 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281,ENSRNOT00000057036 1 3 3 80 12 46412220 46413499 AGAATGCAGTAGCTTAAAGCG 59 46412160 46412179 AGAAGCTGAAGAGCTTTGTC 58 NA Rattus norvegicus 81 Mbl1 ENSRNOG00000011706 ENSRNOT00000015723 2 1 1 80 16 18740562 18741420 AGCTAACCAACAAGTTGCA 58 18741464 18741482 GCATCCTTTCATGGTTGGT 58 NA Rattus norvegicus 81 Jag1 ENSRNOG00000007443 ENSRNOT00000010638 1 1 1 80 3 130082636 130082844 TGATGTCTCCAGGTCTCAC 58 130082574 130082595 ACTCAGCAGAAACATTCTTCAG 59 NA Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 3 2 2 102 19 16419471 16419491 AGGAGGAGAACATTGATCTGG 59 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Ccdc36 ENSRNOG00000048919 ENSRNOT00000071189 2 1 1 80 8 117185268 117185287 GAGGCAGTGAAAGACAAAGG 59 117184417 117185227 AAATTCTGCTTGTCTAGCTGC 59 NA Rattus norvegicus 81 Grk4 ENSRNOG00000011847 ENSRNOT00000015894 1 1 1 80 14 81273483 81273502 AGTGAAGACTGAAACTGAGG 57 81270725 81273442 TCCTTGGTAAGTAACATGCTG 58 NA Rattus norvegicus 81 Tcta ENSRNOG00000048237 ENSRNOT00000075241 1 1 1 91 8 117081807 117081825 AGTGACCGGGTTGTATCAC 59 117080359 117081425 CTGCCATTTCCCATGAAGG 59 NA Rattus norvegicus 81 Mir30d ENSRNOG00000035611 ENSRNOT00000053734 2 1 1 60 7 109286522 109286541 TCTGTGTCTGTAAACATCCC 57 109286481 109286499 ATCTGACTGAAAGCTTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam195b ENSRNOG00000036691 ENSRNOT00000054960 2 1 1 81 10 109721258 109721956 TCATTTATGAAGCCTGGCAG 58 109721196 109721214 TATTCCTCCACTAGGCACC 58 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682,ENSRNOT00000087439 2 2 2 80 3 46894990 46895010 TAAGACGAACCTCTACATCCG 59 46847418 46894949 TTCCCGTATGGTTGACAGAG 60 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 2 2 2 80 8 76870386 76874413 CTTCCCTTAATGGTCCCTG 57 76870324 76870342 TCTGAATGATGTTCCGTCC 57 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809,ENSRNOT00000015127 3 2 2 80 16 54478258 54479137 CTGTCATATGTCATAGGTACGTC 58 54478200 54478221 GCCAATCTGTTTGTTAAGAAGC 59 NA Rattus norvegicus 81 Phtf1 ENSRNOG00000019785 ENSRNOT00000026863 2 1 1 80 2 206469337 206472100 CTGTACCTCATGCAAGTTACAG 59 206472140 206472159 CAATGGTCCAAGCACTTCAC 60 NA Rattus norvegicus 81 Fam50a ENSRNOG00000058439 ENSRNOT00000086921 2 1 1 80 X 156397357 156397375 GGAGGAAGAAGAGGAGGGA 60 156395560 156397314 GTGGTGATCTCTTCCCTCTC 59 NA Rattus norvegicus 81 Cyp4f39 ENSRNOG00000029478 ENSRNOT00000007548 2 1 1 80 7 14512829 14513401 ACTCTAAGGTATACAATCCCTACC 59 14513440 14513458 CTGAGAAAGGCACAAAGGC 60 NA Rattus norvegicus 81 Rps10 ENSRNOG00000052141 ENSRNOT00000043250 3 1 1 60 6 75430095 75430115 GACAGAGACACCTACAGAAGG 60 75430137 75430155 CAGCCTCAGCTTTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nras ENSRNOG00000023079 ENSRNOT00000039572 3 1 1 80 2 205555369 205558604 ATTAACCTCTACAGGGAGCA 58 205558647 205558665 GTCACACTTGTTCCCTACC 58 NA Rattus norvegicus 81 Mybbp1a ENSRNOG00000015236 ENSRNOT00000021134 3 1 1 80 10 59002936 59002957 GAACAAATTTGAACGGTTCTGG 59 59002994 59003124 CACATGTAGCTGGATGTATAGGA 60 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 1 2 2 81 14 1463932 1464559 GCTTCGAGAATGAAGGTGC 59 1464604 1464622 TAACAGCACAGGAAGTGGG 60 NA Rattus norvegicus 81 Col19a1 ENSRNOG00000012759 ENSRNOT00000017169 3 1 1 80 9 30790635 30794485 GCAAACCCGTGGATATTGAG 59 30790574 30790592 AGTTGCAACACGATTCTCC 59 NA Rattus norvegicus 81 Atp6v0b ENSRNOG00000019655 ENSRNOT00000026704 3 1 1 81 5 136719929 136719949 TTATCTTCTGTGAAGCAGTGG 58 136719744 136719886 GTAGCACTGAAAGGCTCTG 58 NA Rattus norvegicus 81 Xrcc5 ENSRNOG00000016105 ENSRNOT00000021656 2 1 1 80 9 79664285 79664303 ACCAAGTTCTCAACAAGCC 58 79665946 79667135 TTCTTTCCTATGGTTTCACGC 59 NA Rattus norvegicus 81 Akr1a1 ENSRNOG00000016727 ENSRNOT00000023072 2 1 1 81 5 135483764 135484202 ATCTTGCTCAGATGGCAGG 60 135483701 135483720 GAATGTTCTGAAGGATGCGG 59 NA Rattus norvegicus 81 Atf7ip ENSRNOG00000008870 ENSRNOT00000011803 3 1 1 80 4 170520296 170520318 GATGAAGAGGATATTTCGTGTGG 59 170520358 170522958 CCTTTCTCCCTCTGGAGAG 59 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 3 1 1 163 9 117044773 117044791 GTTCTTTGTGTCTCCCGAG 58 117047693 117047711 ATATCCTCAGTAGGCCACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 1 1 1 80 1 248439838 248440560 GAGCTATGAGAAAGTGGGTG 58 248440603 248440621 GCATCCTTCTAACACTGCT 58 NA Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 2 1 1 80 1 248439838 248440560 GAGCTATGAGAAAGTGGGTG 58 248440602 248440621 GCATCCTTCTAACACTGCTC 59 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000085355 1 1 2 82 2 207277445 207277463 CATGGCAAACAGGATCAGC 60 207277509 207279004 GATTCCTGGAGTTCTCCCG 60 NA Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 3 1 1 108 20 4283218 4298980 TGCACTTTCTACAATCTTCCC 58 4283067 4283085 TGTTAGAGTTCAGCACCAC 57 NA Rattus norvegicus 81 Sos1 ENSRNOG00000007106 ENSRNOT00000009359 2 1 1 80 6 3131569 3139931 CCACATGTACGCAGATCCA 60 3131507 3131528 TTCAGTAGTTCTTGAGGTTTGC 59 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 1 2 2 80 13 80764923 80765888 ATTCAGTTTCAGACAACCGT 58 80764862 80764880 CTGAACATACACGTCCCAC 58 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 2 2 3 80 10 87345630 87345648 CAAGTCACGGAACTGAGAC 58 87344754 87345587 CTCCAGAGACTCTTTCATGC 58 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000091152,ENSRNOT00000034889 1 2 3 85 10 87350678 87350696 GGTACGAAACCAATGCACC 60 87348389 87350632 ATCCTTAATCTGATCTTGCAGC 59 NA Rattus norvegicus 81 Cpne8 ENSRNOG00000026128 ENSRNOT00000039857 3 1 1 80 7 131667376 131667399 CCTTCCTGGACTATATTAAAGGAG 58 131652426 131657716 CAGGGTTTCCATTTGATGC 57 NA Rattus norvegicus 81 Bcl2l15 ENSRNOG00000037149 ENSRNOT00000056068 2 1 1 80 2 206315035 206315053 CAAGTTCAACGGAGAGCTG 59 206315096 206317640 TTGAGTACAGTTCCTGCCTG 60 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000017110 1 1 2 60 7 143883661 143883679 CCTACTTTCCCTCGCTGTC 60 143883698 143883721 GGTAGAGAAAGTCAACATGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat2 ENSRNOG00000004234 ENSRNOT00000005608 1 1 1 60 6 91477951 91477969 GGAAATTGAAGCAGCAGGA 59 91477993 91478011 GTGGTGTAGGTCCCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmo3 ENSRNOG00000003620 ENSRNOT00000004864 1 1 1 80 13 80845117 80845138 TGGTATATGAAGCAGATGAACG 59 80841924 80845076 CTCCTTCCTGAGTGTTCCA 59 NA Rattus norvegicus 81 LOC687707 ENSRNOG00000042847 ENSRNOT00000067919 2 1 1 83 10 57240302 57240320 CAGACAGCCTCCTTAGGAC 59 57240365 57240478 GGCTGAGATCTCTAACAAGGT 59 NA Rattus norvegicus 81 Wnt2b ENSRNOG00000014385 ENSRNOT00000019349 2 1 1 116 2 207449030 207455086 CGTCCTGGTGGTACATAGG 59 207448932 207448950 CTACTGAGCGCATGATGTC 59 NA Rattus norvegicus 81 Zbtb4 ENSRNOG00000014689 ENSRNOT00000019687 3 1 1 86 10 56383203 56383222 TACTGTGAGAAGGTGTTTGC 58 56383271 56383842 GAAGATGCACTGGTACCTG 58 NA Rattus norvegicus 81 RGD1565283 ENSRNOG00000002972 ENSRNOT00000003979 3 1 1 117 13 88644674 88644692 TTATGTCCTCACTTGCGAC 58 88647606 88647626 CATACGAAGTAGCTGTAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 3 2 2 80 3 117365381 117374378 ATTACCACGTGGTCTTGGAG 60 117365320 117365338 GTTATGTTCAGCTGGCTGG 59 NA Rattus norvegicus 81 Zfp324 ENSRNOG00000027436 ENSRNOT00000036874 2 1 1 82 1 65608782 65609248 CTCCATAGGACCCTCTGTC 58 65608718 65608736 TTGTCCTATTGGGAACCCA 58 NA Rattus norvegicus 81 RGD1564719 ENSRNOG00000022393 ENSRNOT00000033396 1 1 1 81 1 91661737 91661904 CTTGCTCGCTTTAGAAATTCTG 58 91661677 91661696 CTGGGAAGTACTGTTCACTC 58 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 2 2 2 80 10 56289137 56289466 CTCTGGGAACAGAGTCCTG 59 56289075 56289093 CTGGGTGAGTACTGCTCTC 59 NA Rattus norvegicus 81 Olfml2a ENSRNOG00000014034 ENSRNOT00000018853 1 1 1 80 3 23237672 23237693 GGATCTGATGAAAGTACATGCC 59 23237733 23239585 AGGTTGGTCTTGATGCTCTC 60 NA Rattus norvegicus 81 Arid2 ENSRNOG00000004831 ENSRNOT00000006970 1 1 1 80 7 137733109 137733127 CAATCCAAAGCCACAGCTC 60 137733169 137740172 CGTAGATAATCTGACACGCTG 59 NA Rattus norvegicus 81 Lmbrd1 ENSRNOG00000012178 ENSRNOT00000016887 3 1 1 80 9 30959328 30973462 TGTATGGCTACTATACTCTGTACTC 59 30973495 30973518 CCTCATAGTAGAAGTAGACAAAGG 58 NA Rattus norvegicus 81 Bod1 ENSRNOG00000020717 ENSRNOT00000028115 1 1 1 80 10 16260167 16262067 GACACTAAGCCAGCTTACC 58 16262110 16262129 ATTCCATTCCTGTTTGTCCA 57 NA Rattus norvegicus 81 Bod1 ENSRNOG00000020717 ENSRNOT00000028115 3 1 1 80 10 16262115 16262134 AAACAGGAATGGAATCCTGC 59 16262177 16264321 CAACATGCCTGACTGAACC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526,ENSRNOT00000016454 3 2 2 80 1 229066553 229066571 TTACAAGGTGCACAGATGC 59 229066613 229073652 GGTCCCATAGACCTTTAAGGA 59 NA Rattus norvegicus 81 Kif1a ENSRNOG00000023993 ENSRNOT00000036061 1 1 1 80 9 100218590 100219361 GCACACTGAGATATGCAGAC 59 100218529 100218549 GAATCAGCTTGTTGTTAGGGT 59 NA Rattus norvegicus 81 RGD1560617 ENSRNOG00000004457 ENSRNOT00000038168 3 1 1 60 7 127965777 127965800 CTTCACTGGAGAAGATATTGAGGA 60 127965818 127965837 AGCATCTTCACCTTCTTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx19 ENSRNOG00000002979 ENSRNOT00000063870 2 1 1 80 13 83417432 83417451 GATGAAAGCTCCCATCTCCT 59 83416041 83417392 AGAGAATTCAGCATTATCTGCC 59 NA Rattus norvegicus 81 Bcap31 ENSRNOG00000055756 ENSRNOT00000091792 2 1 1 80 X 157098352 157098371 AGTTGGTAGTGACCTATGGC 59 157098413 157104537 CACGTACAGCATCAATGACC 59 NA Rattus norvegicus 81 Rbx1 ENSRNOG00000058914 ENSRNOT00000086603 2 1 1 87 7 122703500 122705871 TGGATCTTTGTATCGAGTGTC 58 122705920 122708668 AAAGCGTGGTTACAGACTC 58 NA Rattus norvegicus 81 Chadl ENSRNOG00000024631 ENSRNOT00000000205 3 1 1 81 7 122923491 122923916 TGGAGCAGATTTCTCCCAG 59 122923428 122923447 GACTGAAGTTGGTTCTGCTG 59 NA Rattus norvegicus 81 Gpr161 ENSRNOG00000003073 ENSRNOT00000004104 3 1 1 80 13 83568822 83571046 TGGAACAGATCAAAGAGGC 58 83571090 83571108 CTGCATAACTGTCCAAGGA 57 NA Rattus norvegicus 81 RGD1562084 ENSRNOG00000015201 ENSRNOT00000020410 2 1 1 81 8 59955905 59955923 CTGCTGTAGACCTCTCCAC 59 59955968 59972520 AGCCAGTTAGACCCTTCTC 58 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 3 1 2 80 9 98398234 98406813 TGCTTGTTAAAGAGGTTGCA 58 98410184 98410203 GAAGCTTGTTTGGATCAGGA 58 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 2 1 1 83 10 17415170 17415188 TCGTTGAGAAACGTGAAGG 58 17409688 17415126 GAACAACACATCATTCAAGGTG 59 NA Rattus norvegicus 81 Fcer1g ENSRNOG00000024159 ENSRNOT00000029179 1 1 1 80 13 89603541 89603560 GTATTGTCCTTACCCTGCTC 58 89602397 89603337 CATCTGATTTCTCACGGCT 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000024036 2 1 2 80 2 209444639 209444658 ATACGTTCCTCTGTTGATGC 58 209444701 209445890 CTCATACTGGGTCTGTGGT 58 NA Rattus norvegicus 81 Neu4 ENSRNOG00000019031 ENSRNOT00000065533 3 1 1 106 9 101285030 101286509 CTATTGCTTTACGCTCCCTG 59 101286578 101286596 GGTCAGACCAGTCCTTTCC 60 NA InUTR Rattus norvegicus 81 Kcne1 ENSRNOG00000001984 ENSRNOT00000002717 1 1 1 60 11 32498758 32498777 CCTGTCCAATTCCACAACTG 59 32498717 32498735 CTCATCTGTTTCCTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361476 ENSRNOG00000016336 ENSRNOT00000022008 2 1 1 60 20 45445048 45445066 CACCTTTGACAAACACGGA 59 45445006 45445027 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr442 ENSRNOG00000033543 ENSRNOT00000041926 3 1 1 60 3 72818059 72818083 CCCTTTCTTATATGTACTTACAGCC 59 72818023 72818044 GCCACTTTCATATTCTCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nobox ENSRNOG00000025720 ENSRNOT00000029651 3 1 1 83 4 72753832 72754161 GCATCATGGTGTGGTTTCAG 60 72753768 72753792 CAGGACCATTATTATCTTCCTTCTC 59 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 3 2 2 83 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890241 10890259 TGGAGCTGTAGTTCCTGTG 59 NA Rattus norvegicus 81 Ddx43 ENSRNOG00000050868 ENSRNOT00000072933 1 1 1 80 8 85767272 85767515 AAACCTACACCAATTCAGTCAC 59 85767555 85767574 TGTTCCAGTCTGTGCTACTC 60 NA Rattus norvegicus 81 Adcy7 ENSRNOG00000014776 ENSRNOT00000020700 2 1 1 80 19 19708801 19709190 CTAGACAGATTGACTATTACTGCC 59 19708744 19708765 TTGTTTCAAACTCCTCATGCTC 60 NA Rattus norvegicus 81 Cym ENSRNOG00000018236 ENSRNOT00000024593 1 1 1 80 2 209965794 209965813 GTCCTACTTCATAGGCTCAC 57 209964996 209965751 ATTGTGATCCTGTCCACTG 57 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 2 2 2 80 8 94008008 94069195 CAGGAATAAAGAGCTTGCCAG 59 94007948 94007966 TCCAAACAGGTTGTGGAGG 60 NA Rattus norvegicus 81 Lats1 ENSRNOG00000014916 ENSRNOT00000020098 3 1 1 80 1 1800473 1802702 TGAAACCAGGAAATGTGCA 58 1802743 1802764 GTCTCTGAGGAACTAAAGACTC 58 NA Rattus norvegicus 81 Coq5 ENSRNOG00000001171 ENSRNOT00000001546 3 1 1 80 12 47079412 47079513 CAAATCAGGAAGAGTTCAAGGAC 60 47079354 47079372 CAATCCCTGAAGTCAGGCT 59 NA Rattus norvegicus 81 Plxnb1 ENSRNOG00000029510 ENSRNOT00000043345 2 1 1 80 8 117847692 117847899 CTTCTTCAGTGGAGGACGAG 60 117847941 117847960 ACAGTCACTCGGATTCTTGG 60 NA Rattus norvegicus 81 Krt36 ENSRNOG00000031805 ENSRNOT00000047580 1 1 1 80 10 88017596 88017615 GAGATCATTGAGCTGAGACG 58 88017379 88017554 TTCCAGAGAATTCCTCATGC 58 NA Rattus norvegicus 81 Krt36 ENSRNOG00000031805 ENSRNOT00000047580 2 1 1 80 10 88019572 88019592 TCTCAGATCCCATACATCTGC 59 88018862 88019530 GGTCAACAGGATCTTCTGC 58 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000061251 ENSRNOT00000085565 2 1 1 60 2 195278752 195278772 CATCCTTCGAGATTTCCTCCT 59 195278712 195278730 GGTAAGCTTGTCTTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc106 ENSRNOG00000015997 ENSRNOT00000021613 1 1 1 80 1 72334533 72335818 GTAACTTCCCACTTAACAGACAG 59 72334475 72334494 CACCAAATGTAGTCAGTCCC 58 NA Rattus norvegicus 81 Zfp295 ENSRNOG00000001623 ENSRNOT00000041177 1 1 1 87 11 38446703 38446721 AGAACTGTGAAGAGGGCAG 59 38446046 38446652 TTGCCTTGCTCAAACTCCT 60 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 3 2 2 84 11 31818579 31818598 AGTAGATCTCCCATTCGTCG 59 31818640 31820187 GAGCCTTATCCAAATCTGTTAGAC 59 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 3 2 2 107 3 147844224 147849280 CGTTGTGTTGGAAGGTCAC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 1 1 1 78 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070103 148070121 CTTTCCTGAGGCACTCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Klf8 ENSRNOG00000039057 ENSRNOT00000041039 2 1 1 80 X 18858824 18859477 ATTTCATCATGAACCAGCGA 58 18858763 18858783 CACTGATGAATCCGTCTTCTC 59 NA Rattus norvegicus 81 Scd1 ENSRNOG00000013552 ENSRNOT00000018447 2 1 1 80 1 264168748 264168766 CACAGGACTTACAAGGCTC 58 264167508 264168705 ATACACATCGTTCTGGAACG 58 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 2 2 3 113 11 36762881 36770740 AGGAAATCTGCAAATGTGAGG 59 36770815 36773593 AGAAGCAATTTGTGCAGCC 60 NA Rattus norvegicus 81 Fam53a ENSRNOG00000017548 ENSRNOT00000023904 1 1 1 80 14 82397658 82397676 TCTCATCACGGAGAAGCTG 59 82397720 82402618 TCAGCAGAATACGGGACAG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 3 2 2 85 9 15610530 15610548 CTTTGGCCTCAAGAACCTG 59 15610594 15618405 TATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Pnlip ENSRNOG00000017725 ENSRNOT00000024065 3 1 1 80 1 279804076 279804754 GGGATCTGGGAAGGAACTC 59 279804798 279804816 GTTGACGATACTGTCGGTG 58 NA Rattus norvegicus 81 Myl12b ENSRNOG00000015733 ENSRNOT00000048125 3 1 1 126 9 119311098 119321425 TTCAGGTCAGATTTGAACCG 58 119310991 119311009 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 LOC499746 ENSRNOG00000010002 ENSRNOT00000013278 2 1 1 80 3 2434195 2434215 TACATCAATGGAGGCAAACAC 59 2434036 2434153 CACAGTAGCATTGGACTGG 58 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607,ENSRNOT00000040162 3 2 2 82 8 55464569 55464588 GAGGAGAAACAGCACAACAG 59 55458433 55464526 TACCAGTTCCTGAACTGTGAC 60 NA Rattus norvegicus 81 Ikzf4 ENSRNOG00000005535 ENSRNOT00000019738 2 1 1 83 7 3072542 3074288 GCAAGGGAAGGATAATCTGGA 60 3072479 3072497 AAATGGTTGGAGTCCTGGG 60 NA Rattus norvegicus 81 Zfp949 ENSRNOG00000043223 ENSRNOT00000032976 3 1 1 80 8 96377163 96377183 ATCTTCAAGTTGGAACAGGGA 59 96377225 96378791 CACATTGCAGAAGACTGGC 60 NA Rattus norvegicus 81 Brwd1 ENSRNOG00000001632 ENSRNOT00000002231 2 1 1 80 11 36406930 36410678 TACATCTTTGCAGTTTAGCCC 59 36406870 36406888 AAGCAAACAGTGCCATCAG 59 NA Rattus norvegicus 81 Krt9 ENSRNOG00000014370 ENSRNOT00000019330 1 1 1 80 10 88103937 88104633 TATGAGTCCAAGATGACCCAG 59 88103877 88103896 GGACACTTGCTTCATGTTGG 60 NA Rattus norvegicus 81 LOC691044 ENSRNOG00000028373 ENSRNOT00000057620 3 1 1 80 2 154982608 154988587 AAGGAAGTTCTACAGGTTCAG 57 154988628 154988647 ATCGTAGTCGATTTGGAGAC 57 NA Rattus norvegicus 81 Ftsj3 ENSRNOG00000009857 ENSRNOT00000013295 3 1 1 80 10 94440321 94440339 GGTAAGAAACGAAGCCGTG 59 94440179 94440279 TCGATATTTCACTGGGTCCTC 59 NA Rattus norvegicus 81 AC109707.1 ENSRNOG00000049527 ENSRNOT00000050715 3 1 1 70 13 31752889 31753063 GGCAATCATAGTGGAAGCA 58 31752837 31752857 GACTGGTTGTTGTAATTGCCA 60 NA DesignRelaxed Rattus norvegicus 81 Lrrc52 ENSRNOG00000004356 ENSRNOT00000005768 3 1 1 98 13 85672464 85694469 ATATGGACCACCCAGATGC 59 85672384 85672404 ACATGTACTGGAGTGGATTCC 60 NA Rattus norvegicus 81 Exog ENSRNOG00000014801 ENSRNOT00000020174 3 1 1 84 8 128139845 128149727 AGTTACCAGGTGATCGGTG 59 128149775 128149793 TAGATTCTGGGCTTCTGCG 60 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 3 2 2 84 2 29614433 29614454 TGATCTTGCATCCTTAATGGAC 59 29614499 29616643 AATGTTGTCCACAAACCGA 58 NA Rattus norvegicus 81 Maea ENSRNOG00000005397 ENSRNOT00000007181 2 1 1 80 14 82665265 82665754 TGTCTATGGCTACAATTCTCTG 58 82665206 82665225 AAGTGGAAGACTTCTTTGGT 57 NA Rattus norvegicus 81 LOC690142 ENSRNOG00000025898 ENSRNOT00000010990 3 1 1 81 7 132391622 132394004 GAACAAACAGTTCAGAAACTGG 58 132394043 132394064 TAAAGAATTCCACACTCGTCAC 59 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 2 2 2 85 10 90231208 90232778 AACCTTATGAGCGTGGACC 60 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295,ENSRNOT00000084429 2 2 2 80 8 116760056 116760074 TTTGTAGTAGCAGCGACAG 58 116760118 116760229 GATGGTTTGCTTGATCCGA 58 NA Rattus norvegicus 81 Mboat7 ENSRNOG00000054459 ENSRNOT00000078640 3 1 1 80 1 64101077 64101201 CCTCTTTAAGAAAGCTGGACC 59 64101242 64101261 CCACAGGTGAATAAGGTGAG 58 NA Rattus norvegicus 81 Dnajb3 ENSRNOG00000023172 ENSRNOT00000025300 1 1 1 60 9 95290587 95290605 CGATGCCTTCCAGTATGTC 58 95290545 95290564 GAAGAACTCCCTGAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 80 13 91154321 91154339 ACAGTGGAGAATACCGGTG 59 91149659 91154277 GCAGCCAGTCAGAAATCAC 59 NA Rattus norvegicus 81 Smarcd2 ENSRNOG00000010557 ENSRNOT00000014508 3 1 1 82 10 94454755 94455170 CTGGATGATCCTAGCAAACAG 59 94454693 94454711 CCATACAGCTCCTTGTCCA 59 NA Rattus norvegicus 81 Olr1768 ENSRNOG00000058820 ENSRNOT00000077744 2 1 1 60 X 156210020 156210038 AACCACACCTTAAGCTCTG 57 156210062 156210080 TCTGTAGTTCAGCCAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spz1 ENSRNOG00000013050 ENSRNOT00000017408 1 1 1 60 2 22146807 22146825 TTCTCCATCTCCTAGCCCT 59 22146765 22146783 GGTGATCCCAGTATTCGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brs3 ENSRNOG00000000873 ENSRNOT00000001164 3 1 1 82 X 159505712 159505731 AAAGTGCTTTCCTTCATCCG 59 159505776 159507338 GCTTTGTATCTGTCAGCGC 60 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000064611,ENSRNOT00000022074 2 2 2 80 8 49715461 49715768 CGAGTATGACTATGAAACCGTC 59 49715809 49715827 AGGAGAATGAGGAGTCCCA 59 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 3 1 1 100 1 100811813 100824824 GACATCTTCCCAAGGTTGC 59 100824887 100824906 GCCTCCAAAGTTAAACCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sln ENSRNOG00000009047 ENSRNOT00000011974 1 1 1 109 8 58431421 58435390 TCTCTTCAGGACGTGAAGAC 59 58435462 58435480 AAACAGCTCCTGGGTAGAC 59 NA InUTR Rattus norvegicus 81 Krtap31-1 ENSRNOG00000036838 ENSRNOT00000055286 1 1 1 60 10 87833155 87833173 TGCTTCCTACCAACTTGCT 59 87833197 87833215 AGGTGGGTTTAATCGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1667 ENSRNOG00000028439 ENSRNOT00000038213 2 1 1 60 19 24670792 24670813 CTGTTCCTCTACTTGTTCACTC 59 24670834 24670852 CTAGCACAATGGTGGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 3 2 2 80 7 123412247 123412767 ACTGGAGTCAGGTTCTGGA 60 123412809 123412829 AAGACAATCACACCGTTTAGC 59 NA Rattus norvegicus 81 Pcsk7 ENSRNOG00000017478 ENSRNOT00000023677 1 1 1 80 8 50204293 50206194 AGCCGAATAGCAGGTATCC 59 50206235 50206256 CTGATAGTGTTTGTTGAATGCC 58 NA Rattus norvegicus 81 Stxbp3 ENSRNOG00000020392 ENSRNOT00000027666 1 1 1 80 2 211628467 211628485 GATGACTTCACCACCAGAC 58 211627429 211628426 ATTCTCTATAACTGTCACACCC 57 NA Rattus norvegicus 81 Zfp563 ENSRNOG00000030273 ENSRNOT00000066520 3 1 1 81 7 15422831 15424652 AGGAGAAGTCTGAGAAGTGG 59 15424694 15424714 ACTCGCTGAAGATTTCTTCAC 59 NA Rattus norvegicus 81 Eif5a ENSRNOG00000016478 ENSRNOT00000022343 2 1 1 94 10 56528018 56528036 GTACGAGAGGACCTTCGTC 59 56527852 56527960 GACAGCACTGTGATCAGGA 59 NA Rattus norvegicus 81 Tceal5 ENSRNOG00000046280 ENSRNOT00000073529 3 1 1 60 X 106747238 106747256 AAGGGCAGAAGATGAAGGA 58 106747196 106747217 ATCTGACTTGTCTTCATCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba1c ENSRNOG00000021438 ENSRNOT00000033450 1 1 1 80 7 140719973 140719991 CTTCAGTGAGACAGGAGCT 59 140720032 140720184 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076582 1 1 3 60 10 87950086 87950104 CAAGTCTCCATTTCCTGCC 59 87950044 87950062 GTTGTCTCCTTGCATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 1 1 1 80 7 81360311 81360330 TGATTTCAGCACAAAGGACG 59 81342627 81360268 TCAAACCACCAACCTCCTG 60 NA Rattus norvegicus 81 Selm ENSRNOG00000061231 ENSRNOT00000081123 1 1 1 80 14 83754152 83754484 ACATTCAACTGTACCACAACC 59 83754523 83754544 GGTAATTTCGGCTTAACAACAC 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 1 1 2 83 13 36147914 36150852 GCTGAAAGGAACTTCCAAGG 59 36141968 36141986 TTAGAGCTGGAGTTGCTGG 59 NA Rattus norvegicus 81 LOC100910143 ENSRNOG00000050374 ENSRNOT00000075415 3 1 1 80 14 1589475 1590359 CACTGTTGTCAAAGGACAGAG 59 1589415 1589434 TCCCTGTTTCAGACATTCCA 59 NA Rattus norvegicus 81 Iqgap2 ENSRNOG00000025406 ENSRNOT00000035017 2 1 1 80 2 26225712 26225731 AAAGAAGGCTCTTGGATCCC 60 26225004 26225673 CACGATGTCCTCAATTTCTTCTC 60 NA Rattus norvegicus 81 Rad9a ENSRNOG00000018729 ENSRNOT00000025317 3 1 1 83 1 219449334 219449719 CTGTAAGATCCTGATGAAGTCCT 60 219449273 219449291 GAGATGCAGCACTTCTCCA 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 2 1 1 80 13 37404005 37407323 TTCGACAAGGTAGTAGGAGG 58 37407365 37407384 TTCCTGAAAGAGCAAATCCA 58 NA Rattus norvegicus 81 RGD1564285 ENSRNOG00000050249 ENSRNOT00000071008 2 1 1 60 7 20069446 20069465 CAGACACAATGTAGCCAGGA 60 20069405 20069426 CTTCTTAGTACCGTATAGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 3 2 2 80 3 161235256 161235378 ATGACTACAGAGGATGCTTGG 60 161235419 161235438 GCATCTTCTCAACCATCCAG 59 NA Rattus norvegicus 81 R3hdml ENSRNOG00000027432 ENSRNOT00000031868 3 1 1 81 3 159887397 159887415 CGCCTTGCTGGATTATCAC 59 159887457 159890798 CTCATCCCAAACCATATACTCC 58 NA Rattus norvegicus 81 Mak16 ENSRNOG00000010783 ENSRNOT00000015297 3 1 1 80 16 64736668 64736852 GAGTGACTTTGAGGATATGGA 57 64736893 64736912 TTATGAGCCTCTTCTTCACG 58 NA Rattus norvegicus 81 Abhd12 ENSRNOG00000036934 ENSRNOT00000010641 2 1 1 80 3 146644769 146646860 ACTATTGGAGTCTGGCACAC 60 146644708 146644728 AGCATCCTCATACCACATCTG 60 NA Rattus norvegicus 81 Serpini2 ENSRNOG00000009903 ENSRNOT00000013452 3 1 1 81 2 173652248 173654247 TCTGGAATAACAGACTCATCTG 57 173652188 173652209 CACTTCCGTCTTCATTTATCTC 57 NA Rattus norvegicus 81 Rnf150 ENSRNOG00000003479 ENSRNOT00000004621 3 1 1 90 19 24221049 24263928 CAACTAACAGTGACCAAGAGC 59 24263979 24263998 AGTTCTACATCAGACAGCCC 59 NA Rattus norvegicus 81 LOC100909882 ENSRNOG00000048892 ENSRNOT00000074742 2 1 1 60 2 46211320 46211341 TTGTGGTCTTTGTTCTAGTTGG 59 46211362 46211380 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scoc ENSRNOG00000003853 ENSRNOT00000005124 2 1 1 112 19 24587731 24587749 ATGAATGCTGACATGGACG 58 24585901 24587336 GCAGAAAGATCTTCAAGTGTG 58 NA Rattus norvegicus 81 Cmtm8 ENSRNOG00000011201 ENSRNOT00000015188 3 1 1 93 8 122855379 122904430 ATAGCTGAGATCGTCCTGG 58 122855304 122855323 CTACAAACATTACCCAGCCA 58 NA Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 3 1 1 80 2 210888807 210888828 CAACAAGAAGGACCTCTTTGAG 59 210888867 210889321 GAATTGTTGCCGTCATACTCC 60 NA Rattus norvegicus 81 Idh3a ENSRNOG00000010277 ENSRNOT00000015102 1 1 1 80 8 59176238 59176257 CGAGTTTGCCTTTGAGTACG 60 59176299 59177854 GACATCCTCATGATGTTGGC 59 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 2 2 2 80 19 25247895 25247999 TAGAAAGGAAGATCCTGGCC 59 25247834 25247853 GTACTACGTCCTGGTACTGC 60 NA Rattus norvegicus 81 Cd79b ENSRNOG00000011917 ENSRNOT00000015976 3 1 1 80 10 94498138 94498446 TAGACAAGGATGACAGCAAGG 60 94497979 94497997 CATAGGTGGCTGTCTGGTC 60 NA Rattus norvegicus 81 Olr93 ENSRNOG00000047377 ENSRNOT00000021179 1 1 1 60 1 168464307 168464325 CAAGCGTTATAGCCTTGGT 58 168464265 168464286 GGCAATGAAGAAACAATCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrna6 ENSRNOG00000012283 ENSRNOT00000016452 2 1 1 80 16 68862157 68863231 GGCCAATGTGGATGAAGTC 59 68864176 68864197 CAACACAATCTGTAGTCCTTCC 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000089893,ENSRNOT00000011978,ENSRNOT00000078703 3 3 3 82 3 159941308 159942243 ACTCCTGCAGGTTTAGCAG 60 159942289 159942307 GAAGCACTTCTTGAGCCTG 59 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 2 2 2 80 5 76414449 76415251 CAATCCAGAATGATCAGGTGG 59 76415292 76415311 GCATTCTGAAATTGGCTCAC 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000038654 ENSRNOT00000059010 3 1 1 60 X 33722051 33722070 CAGAATCAAGCGATTCCTGG 59 33722010 33722030 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sigirr ENSRNOG00000015593 ENSRNOT00000054874 3 1 1 80 1 213899960 213900215 GGGAGGTAGAGATGAATGATGG 60 213899901 213899921 TTACAAATTTGCGGTCCTCTG 59 NA Rattus norvegicus 81 LOC100365450 ENSRNOG00000047004 ENSRNOT00000074724 1 1 1 121 3 122929240 122929258 AACAGTCTTCTCAACGGCT 59 122929426 122929444 CTGTTGGGAGAAGTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000055245,ENSRNOT00000080305 1 2 2 80 2 266399372 266401251 TGGAACAGAACTGGCTATGG 60 266401292 266401312 ACCATGAAACACAGAAACAGG 59 NA Rattus norvegicus 81 Pidd1 ENSRNOG00000049179 ENSRNOT00000072774 2 1 1 80 1 213983431 213983529 ATGTAGATGCTGACCGTCC 59 213983369 213983390 CCTCCTTCATATTCTTCAGGTG 58 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000027641,ENSRNOT00000076499,ENSRNOT00000076592 1 3 3 137 1 167337326 167347638 GGTCACTACTTCCAGTGGG 59 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 2 1 1 80 1 141551534 141551553 AGAGCCTAGGAACAAGACTG 59 141551594 141552364 ACAGAAAGACTCTGGTACACC 60 NA Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 3 1 1 80 1 141551539 141551557 CTAGGAACAAGACTGGGCA 59 141551599 141552369 GAGACACAGAAAGACTCTGGT 60 NA Rattus norvegicus 81 Plbd2 ENSRNOG00000001385 ENSRNOT00000001872 1 1 1 80 12 41617049 41617671 AACATCCCGTACTTTGAGAG 57 41617714 41617732 GTAGGAGAACCAATCTCCG 57 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 3 2 2 80 2 208778024 208779169 TTTGGAACTGCTCCTTTCAC 59 208779210 208779230 CAGGAATTTGATGACTGAGGT 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 3 2 2 80 8 109243299 109243321 CTCAAGAACTGTTGAAAGACTGG 60 109243361 109250473 CAGACATGGCTTCCTCTCC 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256,ENSRNOT00000000824 1 2 2 80 12 50297444 50297462 GTCCTGCTTCATCACACTG 59 50293964 50295227 TAATGCTGGTCCTGTTTCCT 59 NA Rattus norvegicus 81 Mapk10 ENSRNOG00000002079 ENSRNOT00000065965 3 1 1 80 14 8242684 8242705 TCAACCTTCACAGTTCTAAAGC 59 8242744 8288116 ATACGCAGCACAAACTATTCC 59 NA Rattus norvegicus 81 Pwwp2b ENSRNOG00000036649 ENSRNOT00000023619 3 1 1 66 1 211582229 211588439 AAGTCTGGTCTCTTTGGCC 60 211588469 211588487 TGATGGCAGAGGAGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Dnhd1 ENSRNOG00000051291 ENSRNOT00000081667 2 1 1 80 1 170494265 170494284 TCCTGAAGACTCATCTGCTG 59 170494326 170496381 GAAACTCCTGAAGAAGCCTG 59 NA Rattus norvegicus 81 Cd1d1 ENSRNOG00000016451 ENSRNOT00000022150 1 1 1 80 2 186332826 186333124 TCACCTAAAGAAGACTATCCTATCG 60 186332770 186332790 AAAGCTTTCTGAAGCATTCCC 60 NA Rattus norvegicus 81 Irak3 ENSRNOG00000004226 ENSRNOT00000005686 1 1 1 80 7 64928261 64928281 CATGCCGGAAGAATACATCAG 59 64927752 64928221 ACTTCCATGATCACGATTCCA 60 NA Rattus norvegicus 81 RGD1564173 ENSRNOG00000047496 ENSRNOT00000056621 1 1 1 60 X 142345085 142345104 CGGTACCAACGTGAAATGAG 59 142345127 142345145 GATCCCTCCTTCTTCGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr94 ENSRNOG00000036811 ENSRNOT00000055227 2 1 1 60 1 168470453 168470473 TCCTTTATACTGTCTTCCGTC 57 168470413 168470432 CATGTTCCCAAGGTCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa5 ENSRNOG00000014453 ENSRNOT00000019554 3 1 1 80 2 123165479 123165500 GGATTTCAGATTGAGGAAACCA 59 123163787 123165439 AATAGACTTCACGACAGCCA 59 NA Rattus norvegicus 81 Cpq ENSRNOG00000005931 ENSRNOT00000008211 2 1 1 80 7 71880405 71880427 AGACCTATCCAGATACAGATTCC 59 71880467 71975575 TGACCAGGACAACTTCCTC 59 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 3 1 1 74 13 26768600 26768619 ATGACTGAGTACCTGAACCG 59 26605775 26768563 TAGTTCCACAAAGGCATCC 57 NA DesignNoJunction Rattus norvegicus 81 Trhr ENSRNOG00000005048 ENSRNOT00000006783 2 1 1 80 7 83147058 83147077 GTCACTGACACGTATGTGTC 59 83147118 83151679 AGAACTGGGTCCATTCTTCTC 60 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392,ENSRNOT00000079797 2 2 2 81 8 52127775 52129349 CTTCAGGCCTTTGAAGGAC 59 52129392 52129412 TGAGACATTTGTCAGTGACAC 59 NA Rattus norvegicus 81 Kif17 ENSRNOG00000014970 ENSRNOT00000020215 3 1 1 80 5 156663354 156663373 GCTAGTAACTACTTCCGCTC 58 156663415 156665533 TGAGTTGTGATAAGTGAGGC 58 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 3 1 1 70 3 168130007 168130906 GAAACACCTCCAGAATTTAGAGG 59 168130935 168130954 GAATCATCAAGCAGTCGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 2 1 1 80 2 187110649 187110670 AAATTGAAGAACGGATTCTGGG 59 187110437 187110608 CCTTCCACAAGTTGATGGC 59 NA Rattus norvegicus 81 Eras ENSRNOG00000048396 ENSRNOT00000071835 3 1 1 60 X 15322067 15322086 GTCTTTGCTCTTGATGACCC 59 15322109 15322127 TCCAGGTGGAGCATATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfip11 ENSRNOG00000000663 ENSRNOT00000000828 1 1 1 80 12 50323349 50323367 CACACCCTTCTGTCAAGGA 59 50321883 50323307 TGTAGGCACCAACATTAGAGG 60 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 3 2 2 80 8 132030092 132030743 CAAAGCAGATGAAGAACCACC 60 132030032 132030052 CACTTCTCATCTGAGGAACGT 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200,ENSRNOT00000085698 1 2 2 80 5 75191810 75192864 CATCTTCTGCTCTGATTGCC 59 75191749 75191767 GAACCTGGCTTTCGATCTC 58 NA Rattus norvegicus 81 AABR07067459.1 ENSRNOG00000061227 ENSRNOT00000086086 2 1 1 74 9 47065012 47065031 TATCCACCCTGATGCTTTCC 60 47062550 47062568 CTTGTGATGCTGGCAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 2 2 2 80 2 252275978 252280096 ACGCCAAACTTAAGGAACAG 59 252280139 252280157 TGCACTGTAGCTGTCTGTC 60 NA Rattus norvegicus 81 Pramel6 ENSRNOG00000021920 ENSRNOT00000035844 3 1 1 81 3 75561002 75561022 CTGGAGACTTTGAAAGCACTG 60 75561064 75561518 GAACTCTGAGTTTGCACCTG 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202,ENSRNOT00000066892 2 2 2 80 12 51335170 51337547 GTTCAAGAGTATCAGGTTGGA 58 51335110 51335128 TTCGATTCCTTCTCCACCA 58 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 3 2 2 81 1 71434848 71434866 GAAGAAGCTTGGTCTCCAG 58 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Slc25a39 ENSRNOG00000020994 ENSRNOT00000028496 2 1 1 80 10 90352267 90352388 GGACTCTTTGCAGGTTTCC 59 90352205 90352223 GCCAAACTCGTAAGTGCTG 60 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000059061 ENSRNOT00000083839 2 1 1 116 14 84937643 84937661 GACTTCTACCTTCGCCCTC 60 84935715 84937564 TGCTTTGTTGTCAGTTTCCC 59 NA Rattus norvegicus 81 Tirap ENSRNOG00000021420 ENSRNOT00000038312 3 1 1 80 8 36386472 36388143 AAGATAGCTGACTGGTTCAGG 60 36386412 36386430 ATCACTGAGGTGGCTTTCC 60 NA Rattus norvegicus 81 Htra3 ENSRNOG00000008182 ENSRNOT00000010852 2 1 1 80 14 80256604 80259900 TATAGAGCTCTTTCTGAGGCAC 60 80259940 80259959 GCTTCTGACATGATGAAGCC 59 NA Rattus norvegicus 81 Defb22 ENSRNOG00000007525 ENSRNOT00000009913 1 1 1 93 3 147962146 147965791 TTGGTCACAGGTAACTGGT 59 147962071 147962089 CAGGGTCTGTCTGGTACTC 59 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000085735,ENSRNOT00000086769 2 2 2 60 14 83053954 83053972 CCTCTTAGCCAAACAAGCC 59 83053912 83053932 ATCCTCGTTTAATGTGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 2 1 1 116 7 80796065 80796084 ATAGACACAGAGGACAGTGG 59 80793181 80795986 GTATCTGTTTGCCTGGGAG 58 NA Rattus norvegicus 81 Trappc2 ENSRNOG00000042276 ENSRNOT00000068113 3 1 1 81 X 29556542 29556561 GTTGGCCACCATGATAATCC 59 29553974 29556500 GATGACGGTGATCATCTTTGG 59 NA Rattus norvegicus 81 Olr1087 ENSRNOG00000007348 ENSRNOT00000009615 3 1 1 60 7 13997063 13997081 CCATGTATCTGGTCACCGT 59 13997103 13997123 CAGTCTGATATGATGGCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fiz1 ENSRNOG00000016574 ENSRNOT00000022236 3 1 1 63 1 72382075 72382093 GATTCCGAGACTCCACTGG 60 72385131 72385149 CAGTAGGGCTTCTCACCAG 60 NA DesignNoJunction Rattus norvegicus 81 Bche ENSRNOG00000009826 ENSRNOT00000013279 1 1 1 89 2 171121779 171121797 AACTCTAAACTCCGGGCTC 59 171104581 171121730 CTCCCTTTCATCAATATCTCCTG 59 NA Rattus norvegicus 81 Inpp1 ENSRNOG00000012375 ENSRNOT00000016842 2 1 1 80 9 53562930 53562948 GCTGCAGATTTCAAGACCC 59 53562990 53565204 CAAGCCTGGAAACTTGTTCTC 60 NA Rattus norvegicus 81 RT1-CE6 ENSRNOG00000061639 ENSRNOT00000061297 3 1 1 93 20 4675219 4675238 TGATCATTGGAGCTCTGGTG 60 4674779 4674987 CTGTCCTTGCCTAGAGCAG 60 NA Rattus norvegicus 81 Ttll13 ENSRNOG00000056362 ENSRNOT00000090006 2 1 1 80 1 142042311 142043134 TTCTAGAGGTAAACCACTCCC 59 142043176 142043194 CATCACAGAGAAGTGCGTC 59 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 2 2 2 80 8 22853902 22853921 CTTCTACCATGTTAGCTGCC 59 22853733 22853861 TGTAACAGAGGAATCCAAGTG 58 NA Rattus norvegicus 81 Kat2b ENSRNOG00000011871 ENSRNOT00000061882 2 1 1 80 9 4447433 4447453 TCAAGTAAAGAGCCCAAAGAC 58 4447271 4447391 GCTTTGATGGCTCTTCACC 59 NA InUTR Rattus norvegicus 81 RGD1565459 ENSRNOG00000033613 ENSRNOT00000042056 2 1 1 73 10 97505243 97505261 CAACTACAGCAAGCTGCTG 60 97505188 97505206 AGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cand1 ENSRNOG00000007834 ENSRNOT00000010720 1 1 1 80 7 62140450 62151275 ACTTAGCTGTGAAATGTCTTGG 59 62140391 62140411 TACAGAGGGTGTCTACAATCG 59 NA Rattus norvegicus 81 AABR07055728.1 ENSRNOG00000032682 ENSRNOT00000004472 2 1 1 83 7 8504764 8504785 TTATGTGGCCATCAAACCT 57 8504831 8504850 GCAAACCATGAGCTAAAGAC 58 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 2 1 1 80 16 70699743 70699762 TGTCCAATCTGCTTACACCA 59 70693218 70699701 TGCAATTATGCAGGAACCAC 59 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 3 1 1 80 16 70702937 70705001 TGCACTACTCAGAAATGTACAG 58 70702878 70702898 GTTTGAAGTTGTTCTCGAAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144,ENSRNOT00000080695 2 2 2 80 14 82275012 82275148 CCCAGAAGTGTATTCACAGAG 58 82274952 82274973 CAAAGTCTGCAATCTTCATCAC 58 NA Rattus norvegicus 81 Vom1r57 ENSRNOG00000057670 ENSRNOT00000082786 1 1 1 60 1 66687953 66687971 AGGGACGAATCAACTTCAC 58 66687911 66687932 CTACTTTGGCAGTATATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp5 ENSRNOG00000022994 ENSRNOT00000041542 2 1 1 80 1 71459705 71461633 CTTCAAGACCTGGAACTAGTG 58 71459645 71459666 CTTGGTTGTTGTGATCATACAG 58 NA Rattus norvegicus 81 Olr1105 ENSRNOG00000032839 ENSRNOT00000051304 2 1 1 60 7 139953899 139953919 CCTGTTCCTTCTGGTTTACCT 60 139953859 139953878 AATCACGAACAACATCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcho2 ENSRNOG00000015334 ENSRNOT00000020692 1 1 1 80 2 29012813 29012833 ACAATAGAAGAGGCATACTCC 57 29006312 29012772 TGCAAATGTTCCAAGTTGTG 58 NA Rattus norvegicus 81 Olr83 ENSRNOG00000050132 ENSRNOT00000046793 2 1 1 60 1 168327762 168327782 CTCTATGTGGTCATTCCTCCC 60 168327804 168327822 TCTGCTTTGTTCTCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Axin2 ENSRNOG00000055010 ENSRNOT00000088599 2 1 1 80 10 97233054 97234630 CCTGGCTTCAGAAGATCAC 58 97234674 97234692 TAGGTAACAATCAGCTCGC 57 NA Rattus norvegicus 81 Leap2 ENSRNOG00000007218 ENSRNOT00000049820 1 1 1 60 10 38774415 38774434 CTCTTTGCAGTGCTTCTGAC 60 38771239 38771257 GATGAACGTGGACAAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Bmx ENSRNOG00000003705 ENSRNOT00000005181 3 1 1 80 X 32032927 32032948 TGGCTGTAAAGATGATCAAGGA 60 32032988 32035497 GGCTGAGTTTCATCATGGTC 59 NA Rattus norvegicus 81 Got1l1 ENSRNOG00000038473 ENSRNOT00000035985 3 1 1 80 16 69026047 69026068 CTTGTGATTGGGAACATCTCTG 59 69026107 69026223 CTGCTTGCTCTTAATGATGGA 59 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000041515 2 1 2 80 X 31710479 31710499 TCGGAACACCTCTATATGTGG 59 31708582 31710437 TCACAGATGCTCCTGACTC 59 NA Rattus norvegicus 81 Vps13a ENSRNOG00000025539 ENSRNOT00000014800 3 1 1 80 1 235721390 235724366 CTGAAGATGACTCAGAGGAGG 59 235721330 235721351 CAACTCTACATGACACTTGAGG 59 NA Rattus norvegicus 81 LOC100360049 ENSRNOG00000046322 ENSRNOT00000030776 1 1 1 64 8 37349671 37349689 AAAGGACATCTTGCTGCTC 58 37348786 37349644 ATGTCAAAGCTTGCATGGAG 59 NA DesignRelaxed Rattus norvegicus 81 Nucb1 ENSRNOG00000020889 ENSRNOT00000028390 3 1 1 80 1 101491739 101491757 ATCAACGTGCTAGAGACAG 57 101490479 101491697 CAGCTTTCCACTCTTAATGTC 57 NA Rattus norvegicus 81 Itga9 ENSRNOG00000043167 ENSRNOT00000015113 2 1 1 80 8 127527521 127546122 TTCAGGACATGGTGGTGAG 59 127546165 127546184 GTTCTTGAGGGATGATGCAG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000061213 ENSRNOT00000084294 1 1 1 80 2 30744562 30744580 GTAGTGAAGCCACATGCTC 59 30742319 30744519 TCTCAAAGTGTCTGAAGCAC 58 NA Rattus norvegicus 81 Tbpl1 ENSRNOG00000011114 ENSRNOT00000014805 3 1 1 83 1 24000108 24000129 GTGTGCTATCGGATAAAGTCTC 59 24000173 24002001 CTTTACATTGGGCCCTGTC 59 NA Rattus norvegicus 81 S100pbp ENSRNOG00000007099 ENSRNOT00000009436 3 1 1 80 5 147365105 147366633 CAAACAGACATGCCTTTGAC 58 147365044 147365062 TTTGTAGCACAGGGATGAC 58 NA Rattus norvegicus 81 Ttpal ENSRNOG00000009076 ENSRNOT00000012606 1 1 1 80 3 160000563 160000581 TCTGGATTCCTCACAGTGC 59 160000625 160004242 CGGTATCCATCTGTCTGGT 59 NA Rattus norvegicus 81 Xcr1 ENSRNOG00000006620 ENSRNOT00000008747 3 1 1 133 8 132915612 132919029 CTCAGACTCAGATGCTCTCAG 60 132915499 132915519 GGACAATGGTGAAGATGATGG 59 NA Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000073072 1 1 2 81 12 50393161 50396978 ATCAGGATGGATTCCCAGG 59 50393098 50393116 CCTCTTGGATCTCCATGGT 59 NA Rattus norvegicus 81 Ddx4 ENSRNOG00000026686 ENSRNOT00000013035 3 1 1 80 2 44490564 44490583 AGATGGACCTTCTGGAAGAG 59 44485859 44490523 TCGCCAATATCTCTGTTTCCT 59 NA Rattus norvegicus 81 Prss45 ENSRNOG00000029649 ENSRNOT00000043249 1 1 1 80 8 119117725 119118001 CCGTGCTATGGAGATCCTG 60 119118045 119118063 CTCCCACGAGAATATGCCA 59 NA Rattus norvegicus 81 Igf1r ENSRNOG00000014187 ENSRNOT00000019267 1 1 1 80 1 129159257 129159275 GTGACAGGAACAAAGGGAC 58 129159318 129161178 ATCACTTTCACAGGAAGCTC 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261,ENSRNOT00000052403 1 2 2 80 2 210747435 210747454 AATGTTTGTACCCAAGTGCC 59 210745970 210747393 GAGATCTTCTTCAGGCCCTC 60 NA Rattus norvegicus 81 Klk10 ENSRNOG00000030281 ENSRNOT00000048240 2 1 1 81 1 99720981 99721641 CCGAAGAGTGAAATACAACAGG 59 99721683 99721701 CGGGTAGAAGGTCTCACAC 60 NA Rattus norvegicus 81 RT1-CE5 ENSRNOG00000000723 ENSRNOT00000080987 1 1 1 60 20 4896322 4896340 TCAAGGGACACGAATGGAG 59 4896280 4896299 TGGTTGTAGTAGCCTAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363596 ENSRNOG00000032940 ENSRNOT00000072039 2 1 1 60 1 79573302 79573320 GTCCTAGCTGCACCTACAG 60 79573344 79573362 TTGGCGCTATAGGACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 3 2 4 80 14 84287260 84287355 TGACCAAGATCAACTACGGG 60 84287397 84287416 CATTGTGCTCATACTGTGGC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000090593,ENSRNOT00000080108 2 2 6 82 5 158074195 158080492 CATGTTTAACCAGCTGCGG 60 158080537 158080556 GCAACGTGTCTTCATTCTCC 60 NA Rattus norvegicus 81 Slc25a36l1 ENSRNOG00000013802 ENSRNOT00000037120 2 1 1 80 8 104966869 104966889 TTGTGAGAATGATGCTAGCTG 59 104966303 104966830 TTGTTCTTACAACTTCGTGTGG 60 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000073775 3 1 2 87 9 8350168 8350187 GAAGTGTCAATTCGAGAGGG 58 8350237 8351583 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 3 6 8 106 20 4363553 4363720 GAATGGAAACTGAACACAGGA 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 1 1 1 80 5 69107159 69107177 TCTAAGAACCACACCACAC 57 69107095 69107115 CTTAAGAGACTGTGACCGG 57 NA Rattus norvegicus 81 Carns1 ENSRNOG00000018603 ENSRNOT00000025092 3 1 1 89 1 219421239 219421257 GGTGACCTTGTGCATTCTG 59 219420904 219421187 CAAAGGAGCATGTTTCCAGG 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452,ENSRNOT00000073469 2 2 2 80 2 44378955 44378975 GAATCTGACTTGCACTTGGAG 59 44376389 44378916 TTCCCATAGGAGTAAGTCATCC 59 NA Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 1 1 1 60 8 43349797 43349815 TATTGTCTCACCCATGCTG 57 43349836 43349857 TCTCTTCACTTCCTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 3 1 1 60 8 43349038 43349060 GACTCTACTCTTTGTGATGTTCC 59 43349078 43349098 GAGTGAATTTCCAAGCAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc15 ENSRNOG00000032180 ENSRNOT00000040901 1 1 1 80 8 39822973 39822993 GGTAATGCAACAGATGATGCA 59 39807932 39822936 CTGCTTCATAGTTTGACTAAGAGC 60 NA Rattus norvegicus 81 Olr110 ENSRNOG00000015924 ENSRNOT00000021307 1 1 1 60 1 168655877 168655896 CTTCTTCATCTGCTTCCCTC 58 168655919 168655937 GTTCTTCCCGCAATAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr110 ENSRNOG00000015924 ENSRNOT00000021307 3 1 1 60 1 168655584 168655602 CTTCACGAACCCATGTACC 58 168655623 168655644 TAGACAGAAAGATATCAGCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 1 7 8 98 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Ccno ENSRNOG00000010454 ENSRNOT00000013871 2 1 1 83 2 44857663 44857681 TGCTACGACTTCCGAAAGG 60 44857727 44858303 GGATTCAGCAGTCACTTGTG 59 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 2 1 1 71 1 220323977 220324239 TTTCAATCGAATCAGCCAGG 59 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911186 ENSRNOG00000047565 ENSRNOT00000071574 3 1 1 80 1 141824802 141825432 TCAATGGCTATGCTCTTGGT 60 141825475 141825493 CAAACTGGGCTTTCTCACC 59 NA Rattus norvegicus 81 Tmem56 ENSRNOG00000025160 ENSRNOT00000032324 2 1 1 80 2 224778019 224778037 GTGCTTGCATACATTGCCA 60 224773457 224777978 GACTTCAAAGAACCATCTCTGG 59 NA Rattus norvegicus 81 Atp1b3 ENSRNOG00000011501 ENSRNOT00000015476 3 1 1 80 8 104199635 104199655 TACATACAGCATGTCTGACCC 60 104196615 104199596 TCCACAGAATATGGCTTTAGGA 59 NA Rattus norvegicus 81 Vma21 ENSRNOG00000048606 ENSRNOT00000071269 3 1 1 85 16 70146606 70147280 TATTTGAAGGTGCCCTTGGA 59 70146540 70146558 CAGAACCACATGAACAGCA 58 NA Rattus norvegicus 81 Cyp1a1 ENSRNOG00000019500 ENSRNOT00000026473 1 1 1 80 8 62475999 62476017 CGAGAATGCCAATGTCCAG 59 62476061 62476163 ATTGTGTCAAACCCAGCTC 58 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849,ENSRNOT00000079414 1 2 2 135 3 164055530 164055548 TACCTCTTCATGGTGCAGG 59 164050456 164055435 GAGGATAATCTGAGTCATTCAGG 58 NA Rattus norvegicus 81 Kdf1 ENSRNOG00000055933 ENSRNOT00000081318 3 1 1 114 5 151750963 151751556 TCAGCCAGGATGAACTGAC 59 151752099 151752117 AAGGATGAGTCTTGGCTGG 59 NA Rattus norvegicus 81 RGD1309821 ENSRNOG00000023208 ENSRNOT00000033235 1 1 1 92 5 57878700 57878858 AAACAAGGACATCAGCACG 59 57878626 57878644 TTCTCCTGAAGGTTCTGGG 59 NA InUTR Rattus norvegicus 81 Rpl38 ENSRNOG00000029377 ENSRNOT00000046518 2 1 1 60 8 63119489 63119507 TAAAGTTCAAGGTCCGCTG 58 63119528 63119549 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd24 ENSRNOG00000000321 ENSRNOT00000000352 3 1 1 90 20 48335674 48339153 ACCCACGCAGATTTATTGC 59 48339204 48339225 GGTAGCATTAGTTGGATTTGGG 60 NA Rattus norvegicus 81 Golga7 ENSRNOG00000017956 ENSRNOT00000030960 3 1 1 80 16 73570418 73570437 TATCTTGAAGGCTGTCTGGC 60 73570476 73574815 CTTCAAGACCTTCTCGTAATGAG 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 1 3 3 80 20 48570225 48572171 TCTCCAAATGGGAAATGGCT 60 48572211 48572232 CAATCTGAATCTGTTCTGTGCT 59 NA Rattus norvegicus 81 LOC685619 ENSRNOG00000029470 ENSRNOT00000049468 2 1 1 60 3 162165160 162165180 CCTTTCTGAAGAGTTACGGTG 59 162165120 162165139 TCTAACTTCTTCAGCACTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311251 ENSRNOG00000007266 ENSRNOT00000009562 1 1 1 80 8 57988030 57988049 CCCAAGATCATTCAAAGCAG 57 57988091 57992103 GGAACACGGAAACATTAAGG 57 NA Rattus norvegicus 81 Aim1 ENSRNOG00000025998 ENSRNOT00000036753 3 1 1 80 20 48937541 48937559 CAGTCAATCTCCGATCCCT 59 48935414 48937499 ACTCATAGGTGACCCATATGC 60 NA Rattus norvegicus 81 Sdhb ENSRNOG00000007967 ENSRNOT00000010593 3 1 1 80 5 159490342 159496811 GGATCTGAATAAGTGTGGACC 58 159496851 159496871 CGGAAGGTCAAAGTAGAATCG 59 NA Rattus norvegicus 81 RGD1559903 ENSRNOG00000000607 ENSRNOT00000000745 2 1 1 60 20 17751015 17751035 CAACTCCTGTACAAACTCGAC 59 17751056 17751075 AATATGTCACTGGTCTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl1 ENSRNOG00000000549 ENSRNOT00000000660 1 1 1 60 20 41084073 41084097 GTTAAGGTACATAACCAATCTGGAG 59 41084115 41084133 TTTGCAGCCAGTCTTAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1335 ENSRNOG00000059229 ENSRNOT00000081506 2 1 1 60 8 43853913 43853931 ACACCACTACTCAACCCTG 59 43853871 43853890 ATAGTGCCTTCTTCACCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1193 ENSRNOG00000028864 ENSRNOT00000050206 3 1 1 60 8 21305385 21305405 ATTCTGGCTGTTAGCATTGAC 59 21305421 21305445 GATTAGATAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912186 ENSRNOG00000050017 ENSRNOT00000073897 2 1 1 60 8 42348568 42348589 TTATGTACCTAAAGCCCTCCTC 59 42348609 42348628 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defa5 ENSRNOG00000030093 ENSRNOT00000018501 1 1 1 112 16 75338279 75338814 AGATGCAGATGTGAAGGCA 59 75338185 75338203 AGCACAGTCTGTAGATGCG 60 NA Rattus norvegicus 81 AABR07044583.1 ENSRNOG00000060674 ENSRNOT00000091856 1 1 1 80 20 11556217 11556235 TCTGTCTGCTCTGATGCTC 59 11556155 11556173 ACAGCTACAAGGCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1683 ENSRNOG00000047702 ENSRNOT00000047478 3 1 1 60 20 556124 556145 GTAGTAACTCCTACACTGAACC 58 556085 556107 CTCCCTTTACATCCTTATTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a10 ENSRNOG00000025384 ENSRNOT00000030203 3 1 1 97 3 162192034 162192057 GCTTAGCTTTCATCTACTTACTCG 60 162192113 162192543 AAAGCTCAGAGGGAACCTC 59 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 1 2 2 80 3 148351654 148351674 TCAAATGATTGTCCTTCCCTG 58 148351713 148353081 TCTAACAGATCTTCTCTGAGGC 59 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 3 1 1 69 16 75428798 75428817 ATGTCTGTCTCCTTTGAAGG 57 75428846 75429449 GCTTTAATGGCCATCCTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000084809 2 1 3 87 3 80677136 80677155 CAAATGCCTAACTCCGCAG 59 80677206 80677224 GTCTCCTGGTTAAAGGCCA 59 NA InUTR Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 1 2 2 80 16 80911380 80911402 CAGAACAACCAGTATATCCTGAC 59 80911437 80912866 CACGATATCCTTTATGAAGTGGTG 60 NA Rattus norvegicus 81 C1qb ENSRNOG00000012749 ENSRNOT00000017060 2 1 1 107 5 155248632 155251863 GAGGATTCCATACACAGGAGG 60 155248545 155248563 AGGAGACATGGAGCAAACC 60 NA InUTR Rattus norvegicus 81 Ptprd ENSRNOG00000005711 ENSRNOT00000075474 3 1 1 80 5 93024636 93025507 CGAACCGATGAAGATGTTCC 59 93024575 93024594 CGAGACTTTAACAGCTGTGG 59 NA Rattus norvegicus 81 Rag1 ENSRNOG00000004630 ENSRNOT00000006115 3 1 1 81 3 91217431 91217450 GACATTCTAACACTCTGGCC 58 91212807 91212825 CTCAGGGTAGATGGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pex14 ENSRNOG00000013498 ENSRNOT00000018167 3 1 1 84 5 165788515 165788533 CTGTCCAGGAGCTACTGAG 59 165785818 165788467 GTTGATGTGGTAGCCTTGG 59 NA Rattus norvegicus 81 Aadacl3 ENSRNOG00000026613 ENSRNOT00000033150 2 1 1 85 5 162330241 162330837 TCAGTTGGATACAGAAAGTCTC 58 162330883 162330901 GATCTCAGAAAGTGGGTGG 58 NA Rattus norvegicus 81 Dlgap4 ENSRNOG00000020225 ENSRNOT00000037177 3 1 1 80 3 152844914 152844932 TTCGATGAGCTCTACCACC 59 152844974 152845763 TGGTTTCTTCTCTTCCTTCCT 59 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 1 2 2 91 16 80751529 80751549 TGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 AABR07026233.1 ENSRNOG00000038490 ENSRNOT00000058668 1 1 1 89 16 68672122 68673433 AACGATACAATCTCCACAGGA 59 68672053 68672071 TGTTCAGAGGAGATGTGCC 59 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 3 2 2 81 5 150514397 150514415 CTACAGGATGTTGTGCAGG 58 150514194 150514352 AGCCAAAGGAGTAGACCTG 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 3 4 4 113 5 160355994 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358567 TAAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 2 2 2 81 5 157731174 157731192 GATGCTATGGCTGCAAACC 60 157731236 157737867 GTCCTTCTCCATCTGTCTGG 60 NA Rattus norvegicus 81 Fhad1 ENSRNOG00000028064 ENSRNOT00000018953 3 1 1 80 5 160467364 160467385 CAAGAGTTCACCATAGTACCCT 59 160466921 160467329 CATTAGTAAGTCATCTATCAGGTGG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740,ENSRNOT00000073240,ENSRNOT00000026546 3 3 4 81 16 81679497 81684923 ACTGCCTGATTACTATAGCCC 59 81684966 81684984 TAGCTTCATCCTCACCAGC 59 NA Rattus norvegicus 81 Cbfa2t2 ENSRNOG00000016352 ENSRNOT00000021907 3 1 1 80 3 150010507 150010527 AGTTTGGCAATGACATCTCAC 59 150010568 150014225 TTGTCACTGTTGAGTTCACC 58 NA Rattus norvegicus 81 Agpat6 ENSRNOG00000018077 ENSRNOT00000024392 2 1 1 80 16 73645038 73647872 TTGCTATCAAGTATGACCCTC 57 73647914 73647932 TTCTGAGCAAGTACGTCAC 58 NA Rattus norvegicus 81 RGD1559708 ENSRNOG00000012174 ENSRNOT00000016204 1 1 1 60 16 22410847 22410867 GGGAGACAGACACCTATAGAG 59 22410807 22410825 GCCTCAGCTTTCTTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxd10 ENSRNOG00000001581 ENSRNOT00000002148 3 1 1 96 3 61614962 61616343 GAGAAGGAAAGCAAAGAGGA 58 61616401 61616420 GTTTAGTGTAAGGGCACCTC 58 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 3 2 2 117 3 161021667 161024020 CCCAAATTCTGAGCTTCAGC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Cldn24 ENSRNOG00000031521 ENSRNOT00000050279 2 1 1 60 16 47537385 47537405 CATTACTACCACGTATCTGCC 58 47537345 47537363 TTCCATCTCGTTCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 2 1 1 80 16 75027272 75028936 CATTCAACTTCACCCAGCC 59 75027210 75027228 CAGGCAGTTTCACATCGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 2 1 1 90 3 59837458 59839838 TTGTAACTGATTGCCAGCG 59 59839891 59839910 TCCTCTGCTTCTTCCAAGTC 60 NA Rattus norvegicus 81 Mcph1 ENSRNOG00000028586 ENSRNOT00000043384 1 1 1 80 16 76018400 76045451 TTACCAATGGGTTCTGTTGTC 59 76018340 76018359 GCAGGGAAGGTTTCAAAGAG 59 NA Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 3 1 1 60 16 70070155 70070174 GCTTTGGTGTGAAGAACCTC 60 70070197 70070215 GAAAGAACGATGGCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000079262,ENSRNOT00000018697 1 2 2 94 3 176810828 176810846 AGGAGCTATCTGTGCTGTC 59 176810502 176810771 CTGCTTCACTTCCATATCCC 58 NA Rattus norvegicus 81 LOC689713 ENSRNOG00000033703 ENSRNOT00000043188 1 1 1 80 16 84471828 84474211 CCACCCAGACAACTATGGA 59 84474253 84474273 TGAGATTCAGTTGCAGTAGAC 58 NA Rattus norvegicus 81 Dpm1 ENSRNOG00000010993 ENSRNOT00000016150 3 1 1 80 3 164969144 164969163 CCAAAGGCTACGTCTTTCAG 59 164968217 164969102 ATGAAATCGGAACCTCACCA 60 NA Rattus norvegicus 81 Nup35 ENSRNOG00000009290 ENSRNOT00000012628 3 1 1 80 3 67894573 67894593 TCCTAGGGTTTCTACCATGAG 58 67894634 67895894 TGTCGGTCAGAAATAACCTG 58 NA Rattus norvegicus 81 Mtch2 ENSRNOG00000058658 ENSRNOT00000079709 3 1 1 80 3 79680594 79680612 AGGAGTCCTTGGAACTGTG 59 79683817 79684009 GCAGATCCTAAGTCCTCAGG 59 NA Rattus norvegicus 81 Ptpn1 ENSRNOG00000010574 ENSRNOT00000014309 1 1 1 80 3 164710180 164710199 GTGAGGATGAGGACATCCTG 60 164710240 164711310 CTTGACTCATACTGCTCATGC 59 NA Rattus norvegicus 81 Adam24 ENSRNOG00000038671 ENSRNOT00000042587 3 1 1 60 16 54627191 54627212 GATGGGATACTTTGTTCTTGTG 58 54627152 54627171 AACTCTCCATTGTAGCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360,ENSRNOT00000079394 2 2 2 80 3 79977754 79977772 CGGCTAGTAGTCCAGTTCG 60 79976637 79977713 CTTTGTCCCTTCCTAGTAGTCC 60 NA Rattus norvegicus 81 Smim18 ENSRNOG00000049689 ENSRNOT00000074543 1 1 1 60 16 62153875 62153894 TGATAACTGGAACACTGCCT 59 62153912 62153935 GGACACCACAGTAAATATGAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 2 1 2 80 2 212564742 212582936 CAACAGCTTGCTAAGTCCC 59 212582980 212582998 GAGAGCTCCCGCATATCTC 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 3 2 3 83 15 35032125 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032715 TTCTCAGTGACGATGTCCAG 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 3 2 2 81 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699126 ATGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 1 3 3 80 11 38044628 38044648 CCTATGATGACATCGAAGTGG 58 38044688 38045268 CAGCAATATGGTTCTGACCTG 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330 3 1 2 81 8 108791314 108801357 AGGACACCTTAGGCATTGG 59 108791251 108791272 TCAACAAAGCTATCATCAGCAG 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 2 3 3 90 2 219086269 219094350 AACTACAAGTCTACACCTCCC 59 219086199 219086217 CATGTCATCGTCACAGCAG 59 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 2 2 2 80 20 5548776 5548997 GCTTTGAGGTAACAACATCG 58 5549038 5549058 GATTCTCAATCCATTTGTCCC 57 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 3 2 2 80 20 5548720 5548742 GGATGAAGACTCCATTATCAAGC 59 5548781 5549002 CCAGACGATGTTGTTACCTC 58 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 2 1 2 121 2 143928167 143929006 CAGGGAAGACTACGATGGG 59 143926778 143926798 AATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 83 2 216500164 216500182 TTACCAGACGAGGATGAGG 58 216494933 216500118 TTTGTTCATTCTCTGTCGGT 58 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 2 2 2 100 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549978 34549997 TGGAATCGGAAGCTGTAGAC 60 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629 3 1 2 84 2 188330318 188337248 CCCATTCATGTTGGAAAGTATCTC 60 188337290 188337309 GATTGTGTTTCCACTGCCAG 60 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 3 2 3 86 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657911 42657930 GGGTCTTTATGTGCTTCACC 59 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000080147 2 1 3 81 14 86159498 86159516 CTGAAGAAGGTGATGAGCC 58 86158980 86159453 AAGTCTCCGACTTCTCCTC 58 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 1 2 2 80 2 30314082 30319939 TAGACAAAGCCTTCCAGGA 58 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000018532 2 1 3 80 1 178409421 178409442 ATCCTTGTGATACTTATCTGGC 58 178409480 178430973 CTTAACTCCCACAAAGTACCAG 59 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 3 2 2 91 17 9551160 9551178 GTACCAGACATTTCGCCAC 59 9550697 9551105 CCACCTTGAACTGTTCCTG 58 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 3 1 1 60 X 54821391 54821412 GTTTGACAGTGGAGGTTAACTC 59 54822107 54822127 ATACACCAAGCATCATACACC 58 NA DesignNoJunction Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 2 2 2 80 6 50935276 50937506 CAAACCAAGGTGATTGCCC 60 50935214 50935233 AGACTATCAGAGCAGCATCG 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 3 3 3 80 9 8158118 8160743 TGGAACATACAACCACTGC 58 8160787 8160805 AAGATAATGGCTGCCACTG 58 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152 2 1 2 82 11 46202501 46205910 AGTATTCAGCTAGTTACAGCCA 59 46205953 46205971 CTGGGAAGTTGGTTGTTGG 59 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 2 2 2 80 13 94161156 94209028 AAATGTCGAATCGCTCTTGTG 60 94161096 94161116 GAAGAGCGGTAAGTGAAATGG 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000064153 3 1 2 169 1 86969413 86969432 TAACAAGGAGAAGACAGGCC 60 86971188 86971289 CTTCCAGCTCCTTCCATCC 60 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 2 2 2 83 9 63564835 63564853 AATGCCTTAAAGGAGCTGC 59 63558402 63564791 GGATGAAATCATACTCTGGGAG 58 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146 2 1 2 80 X 14905436 14908461 GTTCTAATTTGGCAGGAGCT 58 14905375 14905396 ATATCACTCGAGTCTTCCTCTC 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 1 2 2 80 6 26356247 26357947 CATGTTGCAGAGGTTCTCTG 59 26356186 26356204 AGTGGTTGAGGAAAGTGGA 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 3 1 1 60 1 99864155 99864175 TCATCTTCAGTTTCCTCAGCA 60 99864679 99864700 CTTCAGTCTGAGGAGAATTAGC 58 NA DesignNoJunction Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000079631 1 1 2 107 1 89542472 89543869 TGCGTCTTACATATGCGTC 58 89539124 89539142 TCTGTCTTGTCCAACACCA 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000088536 3 1 2 108 1 189911473 189911617 GAGAGTCTACTGGTTGCGT 59 189910450 189911402 ATCACAAATGAGAGTGCCTG 58 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000081708 1 1 2 80 17 18037359 18037378 TGTCATACACAGAAGAACCG 58 18037421 18038285 CCCGGAAGAACTCATAGTC 57 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000081708 2 1 2 80 17 18037360 18037379 GTCATACACAGAAGAACCGC 59 18037421 18038286 TCCCGGAAGAACTCATAGTC 59 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438 2 1 2 95 1 71251643 71251661 GAATGGCAACAGCTGAGTG 60 71251717 71253353 GTAAATAGGAATTCCCAGCGAC 59 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 2 2 2 80 13 27909757 27910722 TGATCTCACTGTGGTGGAG 59 27910763 27910784 TTACTTTCTGTCAGGGTTTCTG 58 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 3 2 2 81 13 27896373 27906539 TCCTTTCGACCTTCAAGGA 58 27906581 27906602 CCTTCAGTGTCTTTAACAAAGG 58 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907 3 1 2 81 11 58809683 58827001 CCACCCTATTCAAGAAATTGG 57 58803423 58803441 GATGGATCCGTTGATTCCT 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 2 1 4 81 6 52667455 52667476 ATAGAAGATGGGATCGATTTCG 58 52667517 52668874 CTTCTGTGCTTCCACATCTG 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214 1 1 2 86 1 80172763 80172888 GAAGAACAGCTCTTCCAGGA 60 80172696 80172714 GAGTCATCACTGGAGCTGG 60 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214 2 1 2 87 1 80172764 80172889 AGAAGAACAGCTCTTCCAGG 60 80172696 80172714 GAGTCATCACTGGAGCTGG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000037255 1 1 10 80 2 231316675 231316693 GTATGGAAGCCTGGATGTG 58 231314509 231316633 GGAGTATAGCCATTCTTCCCT 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 2 2 10 81 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250834 231250857 GCTAAGACAGGAACTTCATTAACC 60 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 3 1 2 100 1 69739357 69739999 CTCGGACTTGTACCTTCCG 60 69738150 69739294 ATCCAACAACCTGGAGTCAG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 1 5 7 80 1 215610627 215610647 AGAAGCAGAACTACCTGTCAG 60 215610689 215610847 GTTTGCAGAGTTCCTGCAC 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 80 10 4441843 4441861 CCAGGATTCATCCTCTGTG 57 4441901 4443395 GTGCTCTATAATCACTATCTGGG 58 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 1 2 2 80 15 42881236 42881255 CTACAGCAACAGCTTCAACC 60 42862945 42881196 GTGATGATCTCCTGGATCTCTG 60 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010 2 1 2 81 6 11058410 11058506 ATACTCCAATACCCGGCAG 59 11058347 11058365 GGACTATATTGCGGGAGGT 59 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000079437 3 1 2 81 10 31005129 31006156 ACAACAGAATATGCAACAGCC 60 31006196 31006217 AAGCATGTTTGATGGAGAACTG 60 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849 1 1 4 129 9 117636826 117636844 GTACCATACGCCCTCACTC 60 117636935 117647719 CACTGTCAGTCTCTTCCTCTG 60 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 3 2 2 91 10 37757309 37764327 CCTGTGCTATGGTATACCAGAG 60 37764378 37764397 GGGAAACAGAAGGTTTGGTG 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 1 2 2 83 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000075545 2 1 2 86 20 10438617 10438636 TTCCTGTCTTCCACCATCAG 60 10438685 10438963 ATGGGTCATGAGCTCAGAG 59 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000077624 3 1 2 89 4 119915818 119915836 CTTACTTCGAGACCAGTGC 58 119913855 119915766 TTTGTGCATGCTGTTTAAGG 58 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733 2 1 2 80 14 91558357 91575082 AACTTGGAGGTTGGACGAG 60 91575126 91575144 ACAAGCGACTTAATGTGCC 59 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 3 2 2 87 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273696 50277578 GAGTCTTCAGACCTAGGTGG 59 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000090849 3 1 3 97 7 18577211 18577231 GACCACCTCAGTATGTAGCTC 60 18564675 18577152 CTGGGTCCTTTAGCCACTC 60 NA InUTR Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 3 1 2 80 10 90346185 90346203 TCGATGATTCATCCGAGGA 58 90346247 90346614 GGGCACAAGCTTTAAATCG 58 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384 1 1 2 80 1 190596347 190596366 CTACCTCCAGATTAGCCACC 59 190591274 190596306 CTAATCAGAACATCACCTGGC 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576 1 1 2 80 4 176597712 176597730 TGCTTAGAGGACTCTGCTG 59 176596512 176597672 CCATGGGAAATCTTCTTTACTCC 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004577 3 1 2 81 13 80697729 80699830 TGGAAGTTTGCTACTACTGTG 58 80697668 80697686 TCTCTGTGACAACTTCCCA 58 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 1 2 2 80 6 91557949 91560385 ATATTCCACTAAGTGATGGCTG 58 91560424 91560444 GCCTGGTGTAAGGTAAATGTC 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 3 2 3 80 10 35361980 35363419 AGGAGAATGTTGATATCTGGTC 58 35363457 35363478 GGTCAGTACCTTGGAATATCAC 58 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166 2 3 4 80 15 51925733 51925752 GTAGTGAGAAGACCCTGGAG 59 51920811 51925691 CACAAACTGCAGGGTAACTG 60 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 1 1 1 62 18 29587420 29587438 GAATGTTCAGAGGTGCAGC 59 29585977 29585995 CACATTCTTCTCTTGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252 1 1 2 80 12 6267818 6267836 TGATGTACGTACACGTAGC 57 6267880 6274291 CCAGATCCCAGATCTTGAC 57 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228 2 1 3 80 9 10359438 10363405 AACTGTCAGGGAGATCTGC 59 10359300 10359319 GAGGGCAATAGTTTCCATCC 58 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 2 1 1 113 5 162032733 162032751 GAGAACGCATCCAAACTGC 60 162052479 162052498 CTTACACTCGCTGAAACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 2 1 6 80 1 282643686 282643704 ACATCTATACACCAGCCCA 58 282672491 282681786 CTATAACCAGTGCACCACC 58 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 2 2 2 80 1 192026237 192027054 ATTCACTCCATTACAGGTCTC 57 192027095 192027114 TCTCAACGTCTTGTCTTCAG 58 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667 2 1 2 90 9 65340325 65340345 CTGGCAACAATGATAGAACGA 59 65340397 65340909 TCCTATGCCCTAAGGTCCT 59 NA Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 3 2 2 80 19 30880743 30883016 TGAACAAGTTACGGAAAGATGC 60 30883056 30883075 AGGAACTGGATCTATCGCTC 59 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000067374 2 1 3 93 17 23116766 23136877 GAAGTATAAGAATCTTATGGCGAGG 59 23136928 23136946 GACGGTCAAGATGTCTCCC 60 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 1 2 2 80 14 7738622 7738641 CTAGGAGTGTTTATCAGCGC 59 7738201 7738579 TATCAAACGGTCTCCAGGC 60 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000034472 2 1 4 81 19 755959 757536 CTGATGAAACAACAGGAATCCC 60 757578 757596 GTACACTAGCTGGTCCACC 60 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 1 1 1 88 14 107349705 107349723 CGAAAGAACAAGTACCGCC 59 107349875 107349893 CTTTGAAGGATGGCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC687441 ENSRNOG00000016997 ENSRNOT00000023028 2 1 1 86 20 6157041 6157248 TTCTGGAAGAAGAGCCACAG 60 6156974 6156992 CCAGGGATTTCTTCCTGGG 60 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405,ENSRNOT00000085900 1 3 3 60 20 2092328 2092346 ATGCCTTCTTGGTCTCCTC 59 2092367 2092388 CTGGGTCGATGATCTTATTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 1 2 3 80 20 2089439 2092245 GTATCAACTGCAAGTTTCAGG 58 2092287 2092305 CAAGAGGAGGAAAGGACTG 57 NA Rattus norvegicus 81 Eif3e ENSRNOG00000027690 ENSRNOT00000038340 3 1 1 80 13 100149489 100149507 ACAAAGATGTGCGGAAACG 60 100149545 100150238 GGTCTTTATATGTGTAAGACTCCTG 59 NA Rattus norvegicus 81 Defb28 ENSRNOG00000036900 ENSRNOT00000055412 3 1 1 81 3 147992780 147992798 CTCGGGACACATTAAGCTC 58 147992843 147994466 TCTGAACCATCCTTCTGGG 59 NA Rattus norvegicus 81 Olr758 ENSRNOG00000004938 ENSRNOT00000006545 1 1 1 60 3 102659245 102659266 GTACGACAACATTCTTCAACTG 58 102659286 102659305 TGATGTGAGCTGATAAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maats1 ENSRNOG00000002976 ENSRNOT00000040773 1 1 1 80 11 64984030 64984463 TATCAACAGCCAAGACAGGA 59 64984506 64984524 CCACAGTGGACTTGGTAGG 60 NA Rattus norvegicus 81 Maats1 ENSRNOG00000002976 ENSRNOT00000040773 3 1 1 80 11 65013759 65017944 GTCAAAGAGAAAGTGAGGAACG 60 65017985 65018003 CATGGATTCCGTGTTGCTG 60 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770 1 1 3 80 X 36971424 36974118 TCACCATCTGCTGAATCGT 59 36969058 36969077 CGACAATACTTCGGAAGCAG 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000028363 3 1 2 88 1 221260956 221260974 AGTAAGGGTGTGAGCAGTG 59 221259406 221260905 TTTCCACAAATGTCACAGGC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000051480 1 1 4 81 20 2058462 2058726 CGATAAAGCGCACTATAGCC 59 2058770 2058788 TCCCACACTCCATGTTGTC 60 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000084123 2 1 2 106 19 25950274 25950372 GCTATAGAAAGGCTGAAGGC 59 25950187 25950205 TGACTCAGGAGGAAGTTGG 59 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000079035 3 1 2 85 17 45446848 45446868 TTTATGGCTTTGGCTCAGG 58 45445270 45445288 TACTCATAGACGGTGCCAG 59 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000078048 3 1 3 135 5 151072729 151072748 GACATGTATCGGAATCCGG 58 151061191 151061209 GCTTAGTTCCAAGTTGGCT 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 2 2 9 85 20 2083047 2083514 AGGATCCTGAGGTTTGGTG 59 2082980 2082998 CAGAGTGCTTTGCTCTCCT 60 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 1 2 2 80 3 46305798 46308046 ACACTGTCAGATTCTTCTTGG 58 46308086 46308106 CAAGTCTGTTCCAAATGAACC 58 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000083438 3 1 2 87 11 53202292 53202315 CGGAAATGTGTATCTATTCCAAGG 60 53202361 53214545 ACTGGAAAGGACCTTTGCT 59 NA Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 2 1 1 84 19 25947265 25947283 TAGCGACCATGCAAGAGTC 60 25948669 25948687 CACTCTGCAATATGCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 2 2 2 80 10 40563930 40565136 TCATTGTCCAGAGGATCCC 59 40565180 40565198 CTGTGCCAAAGAACAGAGG 59 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892 2 1 2 132 1 188693805 188693823 TTGGAGCAAAGATCCAGCA 60 188689949 188693709 CCATGGGATTAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 3 5 5 136 12 52398214 52398232 GTCGGAAGACAAAGTGTGG 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA InUTR Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000058163 2 1 4 80 5 115204775 115204793 TGGCTGGATTTAACTTGCC 58 115201691 115203024 TAACCAACCACTGTGAGGG 59 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000066430 2 1 2 83 10 15629976 15629994 AAACCACGTAGCAGATACG 58 15630041 15637126 AATAGCATCCGAGAACCTG 57 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679 3 1 5 98 13 47423152 47423170 AAACTTACTCCTGTGGCCT 59 47415473 47422656 ATTCTCCACTTCAGTTGGC 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000050354 2 1 5 102 13 47421968 47421986 AATTACAGTGTTGGGAGCC 58 47415472 47421903 CATTCTCCACTTCTTGGGTC 58 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 2 2 2 129 17 44793464 44793482 GTCACCAAGTACACCAGCT 60 44756638 44756659 AGTCTCCACTCAGATAAGTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 3 2 4 80 7 116743372 116743391 CCTACAACTGCTGAAAGAGG 58 116743431 116743560 ATAGTAACACTCTCACCCTCTG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861 1 1 5 80 X 64273629 64273648 GAGCTTGTGAGGTTCTTCAG 59 64273001 64273586 AGCAGAGTTGACACATGTG 58 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000017243 2 1 2 81 8 123326998 123327017 TCATCAACCTCATCCCTCTC 59 123317690 123326959 GTGCTATATGCTATGTAGACTCTC 58 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005545,ENSRNOT00000088861 1 2 4 80 7 64769196 64769215 AAACCTCACAATTTCCACCA 58 64769257 64775476 AGCTAAAGACACATGAGCTG 58 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 2 2 2 80 14 108443514 108443535 GAAGCCTACAAGTGGATAACTC 59 108443575 108446270 CACTTCGAACAAGCTCTTCC 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 2 2 2 80 8 70723515 70726651 GTCACCTGAACAAGACTTCTC 59 70726691 70726711 GAGGACTATAAATGAGGGCCA 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000084155 3 1 2 81 6 41838909 41838927 CAACACATCTGAGGACGAG 58 41835610 41838866 AGCTCTAGAGGAATCCATCAG 59 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 2 2 2 80 11 61467130 61468657 AACATCTATCTGCATGTCCAG 58 61467070 61467090 AGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000055127 3 1 2 158 3 163808772 163811820 CTACCAACCACAGAGGTCC 59 163808632 163808651 TGCCCATAGCCCTAAATCTC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000067546 3 1 3 90 2 41442458 41449044 GGCTACATAAAGTTCAAGAGGA 58 41449094 41449113 ATATGTACTCCGACACCTGG 59 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000024414 2 1 3 81 4 118496283 118500914 CTTGAGAAAGACCAGGAGCA 60 118496221 118496245 AGAAGTTACAGCAGATGTATAGAGG 60 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829 3 1 2 86 17 43500371 43500389 CAGCTTGAAATCCAAAGGC 58 43499608 43500321 TCTCCAATCCTCAATGCAC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000037975 2 1 2 61 1 84893850 84893868 ATGTTGGAGACCTACAGCC 59 84893803 84893821 CACATCACCCATTCATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578 1 1 2 80 6 72412701 72418131 GTACAGAATGGGATAAGGATGAC 59 72412643 72412663 CCTTCAGCTTACTCATTAGCC 59 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 1 1 1 62 10 13000180 13000198 TCGGACAAAGCTGACTGAG 60 13001449 13001467 TTTGCAGACCAGTAGAGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 2 1 5 80 7 120772355 120773297 GATGGCCCAATTTGTCTGG 59 120772293 120772311 TTTCCCATAGTCATCGGCC 60 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 3 2 5 82 1 80524477 80524495 TATGGTGTGGACAAGAAGC 58 80524297 80524434 CTTTCAATTCCATGTGGATCAG 58 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000090663 1 1 2 80 17 46682514 46682535 AAATCCAGACTTACACCATTGC 59 46679130 46682475 TATTAGCCATCTCCTGTCTCC 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000090663 3 1 2 80 17 46682514 46682533 ATCCAGACTTACACCATTGC 58 46679128 46682474 AATATTAGCCATCTCCTGTCTC 57 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 3 2 2 80 3 111057714 111057960 GTCAGTGTTAAGAGAAACCATCC 60 111057999 111058018 TCTTGTCAGTTGGAACAGGT 59 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 1 3 3 80 18 39446022 39446042 CATTGGTTATGGTGACATGGT 59 39446083 39463265 CAACCTGCACCCATTATTCC 59 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326 1 1 2 80 9 71255039 71255058 ATTCAGTCTCCACAAGTCCA 59 71255803 71262310 AGTTGAAATCTGAGTTCCGG 58 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 3 2 2 156 20 5804162 5805501 TTTATCAACCTGGAGGACGG 60 5803646 5803667 TGTAGTAGATCCCATAGAGGGT 59 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866 1 1 2 98 14 85271593 85272701 ACAGCCTGATTGGAGACAG 59 85272763 85272781 CACTTAAGCCACTGCTGAC 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000000640 3 1 2 137 20 8366503 8366933 TGTCAGGACTGTGACTGAG 59 8367032 8367525 TAGTAGCAGGTATGGAATGGG 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108 3 1 2 80 20 8325317 8325337 AACACCTGAGATTTCCAAACG 59 8325376 8327463 TTCATTGTTACCGTATGCAGAG 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 1 1 1 60 13 99101081 99101103 GTGAAGAAACCTCATCGTTACAG 60 99099788 99099807 GATAGCGTCTGATTTCTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000092024 2 1 2 87 10 82144138 82146405 GAGAAGGAATCTAATGTTGGACG 59 82139446 82139464 AGAGTAGTAGGGCTTGCAC 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887 1 1 2 86 4 179498593 179498611 GTAGACACGAAACAGGCTC 58 179486810 179498543 GTCAACACCCTGTCTTGTC 58 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 1 2 3 91 4 150520267 150520285 TTACGTAGGAGCTGTGGTG 59 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 1 2 2 80 15 37720362 37725216 GGAACGTGAAAGGAAAGCC 60 37725260 37725278 AAGGAGGCTTCGATCACAG 60 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 1 1 2 93 2 235321272 235322663 GTGTTCATCTGAACATTGGCA 60 235322718 235322736 CAGTCGTTCTTGCCTTTCC 59 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332 1 1 2 80 12 2239911 2239930 TCTCCCATGTTACCAAGGAC 59 2239650 2239870 TTTGTGACATCTGAAGAGCCT 60 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755 1 1 2 80 8 66884314 66884334 TGCAGTTTGATCCCATAAAGC 59 66881334 66882382 ATTGTGGGAGTACAGCCTC 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013621 1 1 4 83 4 152495394 152495412 ACAGCACCAGGACATACAG 59 152492807 152495347 ACGACGAGGCATACTTGAG 60 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 2 2 2 80 8 114333009 114333027 AACGTGCTCAAATGATGGT 58 114333069 114339148 AGAATAGACCTCGTCGTAGTG 59 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129 3 1 2 81 11 67082200 67082220 TCGTCAAGACATGTGTAACCT 60 67094345 67101789 GGAACAGCATCTGAGAGCA 60 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000089005 1 2 3 91 20 13971558 13971576 TATCATCTTCGGAGGCCTG 59 13971631 13971796 TCCACAAGTTCCTGTTGCT 60 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 2 1 2 109 15 51454619 51454638 TCTAGGCTGTGAACAGGAC 59 51454711 51461140 GAGTTCTGTCAGGTTCCGT 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 2 2 4 80 13 76298274 76335763 AGACATCAGTAAAGGCAACTC 58 76335804 76335823 TATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 3 2 4 80 13 76289671 76295384 CTTCTTGACTGGGATGGTG 58 76295428 76295446 TACATCACAGACCGAACCT 58 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 2 2 2 80 16 20339606 20339624 CTGTGCTGTTGGTCTTCAG 59 20339664 20341729 GTTTATCATGGTACCTCTCACAC 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000085644 3 1 3 114 7 2907653 2907671 TGGACTTTGAGCACTTCCT 59 2907370 2907576 GTTGCTGTCCCTTCTTTGTC 60 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 3 1 1 63 7 140467184 140467202 CTACGCTTCCTCATGAACC 58 140467644 140467662 GCATCTCAGAGAACACGGT 60 NA DesignNoJunction Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 3 2 3 80 X 65279638 65280648 ACTCAATAAGAAGGTGACTGC 58 65280690 65280708 TCTGGATAGAACTTGGCCC 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000089471 1 1 3 80 14 22780361 22780379 CTGCATGACCTTAGCTGGT 60 22780422 22806606 AGGGTATGAAGGGATCACAC 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 1 2 2 80 1 166623491 166623770 AGAAGATGGCTGAAGTGGG 59 166623813 166623832 CACAGGAGGTCATAAGGAGG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 3 3 3 60 7 116606417 116606435 ACTGATACCGTTTGTGCCA 60 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 1 3 3 80 17 59714733 59714753 TTCAGAAGCTTGATGTGACAC 59 59714795 59723845 ATTCTCGCAACTCATCCCA 59 NA Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 2 2 2 80 X 105268445 105268464 AGAGGCTTAAACAGCTCCAG 60 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 1 2 2 80 5 169400328 169406759 GTGCCTCCTATTGTGTATTTACG 60 169406799 169406817 CATGCGTTCTAGCTTCTGG 59 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000089126 3 1 2 85 8 65733627 65736425 CTAACCACTCACTTTCAGCA 58 65736472 65736491 GGATACTTTCTCCACATCCC 58 NA Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 2 1 1 60 18 40724700 40724718 CAGACCAAGAAGTTGGGAC 58 40723953 40723974 TGTAGGACCAGTTTACCATCAC 60 NA DesignNoJunction Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533,ENSRNOT00000082876 2 2 4 101 3 112242570 112250999 AGAGGCCAAAGGAAATTTGTG 60 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 2 2 4 99 3 112229137 112229155 TCTTTACCTGGATCCCGAG 58 112229218 112250998 ACAAATTTCCGGAGGTCTC 58 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152 2 1 2 80 11 66799436 66799455 CTCCACGAAGATGAACTCCT 59 66797945 66799395 CTGCATCACCCTCAATTTCTG 60 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000003255 1 1 2 82 11 66801382 66801400 GAGAAGGAGGAACTCATCG 57 66797949 66801336 ATCACCCTCAATTTCTGGG 57 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867,ENSRNOT00000091150 2 2 2 80 1 214194947 214194968 TCCTATAGAACAGGAAGACCAG 59 214195007 214196548 GATGTCCTGGAAAGTTCTGAG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286 3 1 2 99 10 105752613 105752631 CCTTTAAGTACAGCCCTGG 58 105745373 105752552 AGCTGTTCTTTCTGAACTCTC 58 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256 1 1 2 80 4 84374445 84374463 GTAGAGGGTGCCTACATCC 59 84374507 84376261 GGTCTGGTTTCCAAACCTC 58 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 3 2 4 175 15 36823466 36824068 AAGTCGTTGAGGTCTCTGC 60 36825286 36825305 GTGTGCTGCTATCACAAAGG 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667 3 1 4 80 15 36836270 36836288 ATCTGGACAGAAGCTCTGG 59 36836331 36837318 TTTACTCACGTCATTCAGGC 58 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000026665 3 1 2 112 1 166781274 166781292 GTACAGGTTCTCCTTGCTG 58 166781368 166797000 CGAGTGACTAGGACTTCCA 58 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036205 2 1 2 132 10 11824670 11824688 GATATCTGCTCCTGGGAGG 59 11824784 11824807 CTTTCTCCTTTGCCCTCCT 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000080365 1 1 2 91 18 57143385 57146056 ATTACTACCGCTCAGCTGG 59 57141346 57141364 CTTGCTCTTGGTTGCTGTG 60 NA Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000080714 3 1 2 108 10 104378472 104378789 AACGTACAGGTCTGTCGTG 60 104378861 104378879 TGAACTGGAACAGATCCCG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 1 1 3 83 7 141067354 141067373 GCATTGACCTCTTCTTGGAC 59 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 2 1 3 83 7 141067354 141067372 GCATTGACCTCTTCTTGGA 58 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 2 3 3 80 7 141065931 141065949 TGATCTTCACCTGCTTCAG 57 141065992 141066207 CTGACATCAAGATACCTCCC 57 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 3 2 2 80 2 77998646 77998780 CTAGAATATAGCAGAGAAGGATTGG 59 77998816 77998836 CTTCTCGATCAAGTCTAGGCA 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424 2 1 2 92 15 84477325 84477343 TACACAGCTGTACGGTCAC 60 84447044 84477269 GCAGAACTGAACTTTGCCA 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 3 4 6 82 15 36972825 36976237 AACATGGGAGATGCATTTAGC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057986 1 1 5 80 1 79681617 79685368 GGTGAACAAGCCTGTAACAC 60 79681556 79681574 CAAGTGAAGACCACTGAGC 59 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000051565 3 1 2 80 12 16032959 16032978 TCCTTTGATTCTGACGTGGA 59 16035401 16038097 GTAAGGTGACTTTGGTGATGTG 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 1 2 4 80 5 104739501 104740929 CTTTGGTGATCCAAGATTACTG 57 104740969 104740988 GATGAACACCTCTGTTACCA 57 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 1 1 1 60 5 77605853 77605871 GAACTGCAACAATCCAGCC 60 77605083 77605101 AGAGACTGGGACTTGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 1 2 2 80 7 23818969 23820423 TTTCACACGACAAGTGCTG 59 23818907 23818926 CGGAAGATGCGTAGTTTCAG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798 2 1 3 91 1 46871431 46873007 ATGCATGTGCCAAATGTCC 60 46873062 46873080 CATCTGGAATTCTGCCCAC 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000036359 1 1 2 80 9 78585567 78585586 TAACCCAACTACAAAGGCCA 59 78585504 78585527 GTTAAGACAGAAACAGTCCCAC 59 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000081029 3 1 3 82 8 107524065 107525333 ATATACAAAGGCAGTGTGGG 58 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 2 2 2 80 X 82882743 82882766 TGAAGTAGGAGAGGATAATGACAG 59 82875543 82882704 TCGTTGGACTCCTCTTGAG 59 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 3 2 2 80 X 82946082 82955316 TTCAGTGTAGTCAGGACGTG 60 82946021 82946039 AGTTCCTGCTGTTCCTGAC 60 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 3 3 4 108 5 78369877 78369895 AGAGTTTGCCATGTTGTGG 59 78368992 78369806 GATGATAATGTCAGCACCGG 59 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 3 2 2 80 15 10463901 10463919 TGGGTTATGGACTCTCAGG 58 10463963 10464985 CAGCCATGCATCTTAAAGC 57 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 2 2 2 136 10 29193607 29193625 GTGAAATGCAGACCATGGG 59 29191728 29192621 GATGGTGGAGATCTCCACC 59 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 3 2 2 137 10 29192697 29193601 AGAAGTTCAAGGCAACCGT 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252 3 1 2 93 10 83104145 83104169 CTTGTCAAGAGAAGTTAAGGCT 58 83104073 83104091 CAAGTATCCAGCTCGTAGC 58 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000082160 2 1 2 80 10 83122631 83125363 GAGTTCTCAAGATTCCAGCC 58 83122570 83122591 GTCACTCTTCTGGTAGAATAGG 58 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 3 2 2 80 8 67741613 67742497 TTCTGCTAAAGCTGATGGAG 58 67742538 67742558 CCATGATGAATGTGATGATGC 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331 1 1 2 87 7 24195215 24200502 GCATTCCTAGTGAGACGGA 59 24188817 24188835 CAGTGAGAAGATGCTGGTG 58 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 1 2 2 80 1 101070016 101070034 ACCTGTATGAAAGGGAGGC 59 101070077 101071257 TCTCATAGGCCTTCATCTGC 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897 1 1 2 80 10 65768692 65768711 AGACCTCAAGAATGGTTCCC 60 65768751 65768824 AGCTCATAGCAATACTCACCTC 60 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 3 2 2 80 1 48724172 48724190 CCCATGGAAGACATCCCTG 60 48722739 48724129 CTGAAAGGCATCCTTCTCCT 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 2 4 4 80 3 3000774 3000794 GGTCATTGTCATTTGAGACGA 59 3000835 3001452 GGTCTTCTTGCCTTTGAAGG 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402,ENSRNOT00000083774 3 3 4 80 3 2970211 2970745 ATGACCAGGATGATTTCTCTG 58 3000479 3000498 TGAATCTCTTCCCATCTGTG 57 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 87 1 257590073 257746040 CTACATCTTTCAGAAGGGTGG 58 257746089 257746107 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 83 1 257584945 257721301 TAGTGACATGGAAGGTCTATCTG 59 257721339 257721362 GATGGAAATGTACGAGATATGTCC 59 NA Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 1 2 2 80 11 68179557 68179576 CTTTCTAAGGTCTTGGAGGG 57 68165990 68179515 GGTTTCAAACTGAGGAACTG 57 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000076990 1 1 3 139 13 77958838 77958856 GGTATCCTCAGCTCTTCCC 59 77954862 77958735 CTTTCTGCAACACGATCCG 60 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863 3 1 2 81 7 143416228 143416246 AGTTCAGAGCCAATACGAG 57 143415894 143416185 GAGTTCTTCATACTTGCTGTG 57 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000021193 1 1 2 124 4 179305720 179306961 CCAGGACTGCAGTAATGGA 59 179298019 179305633 GATCTTTGGCCCTAAACGTC 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 3 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000033633 2 1 2 80 1 75468652 75468671 TTATTCTGACTCCTGTGCGT 59 75468713 75470738 CCCTGATGGTCTCAAATGGA 60 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254 2 1 2 81 1 48274076 48281578 CCATCGTCACTGAGTTTAACC 59 48281621 48281639 AAGAAGCCCAAGTTCACAC 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000036156 2 1 2 80 1 266027636 266027654 CACAGTGATGAAGAGGAGG 57 266027698 266029843 GTCTAGCAAGTCCTGACTG 57 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 1 1 4 85 1 262892887 262913312 ATGACCAGCTTACGGACAG 60 262913361 262913379 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505 2 1 3 86 13 76965620 76965638 GAATCACATGCAGCTCAGC 60 76965686 76979444 CTGGATCTGTTCCAATTGCTC 59 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 3 2 2 80 1 72775636 72775654 CTCAGCCTTCATTGACCAC 59 72775697 72779292 TTGTCAAATGGTGCATTCAC 58 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 1 3 3 107 13 48801367 48804635 CTCTTCCAGTTCCCTTCTG 57 48804705 48804724 TTATGTCTTCTGCAGGTCTG 57 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190 2 1 2 82 7 73285779 73289135 AGATGATCCAGACAATGAGCA 59 73289179 73289197 GGTTCCAGATGAAGCTGTG 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000086495 3 1 3 92 11 70401368 70401388 GTTGGTATCGTGAGTTCCC 58 70399454 70399472 CTATCAGGAAGTCAGAGCG 57 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 2 3 3 80 1 149150765 149151497 AATTTGACTCTTGGCAGATGG 59 149150705 149150726 GATTCAGGTTCACTTTGTCTCC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 110 17 5436598 5436617 GTGAAGTCGTGAACTTACCA 58 5429959 5432941 CGAGGAAAGTAGTTTGTAACAG 57 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121 1 1 2 83 4 130172949 130342633 CTGAAGAGCAGCAGTTCTG 59 130342680 130342698 TAGCAAGATGCGTGATGTC 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 2 4 4 80 1 265551479 265551497 AAGTACACATACCCTGCCC 59 265551294 265551437 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171 3 1 3 142 15 11874675 11881758 CTTGCTTGAAAGGAATGGGA 59 11872507 11874573 TCATGTCAACCTTGCTAAAGTC 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 1 2 2 80 19 39070940 39071876 TGGAGGAGATGTCCAAATCC 59 39071919 39071937 TTGAAGGCCATCCAGTACC 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 3 3 3 95 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558983 254670938 GTGATCCCAAGGTACCTGTC 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000077458 3 1 3 83 6 108502110 108502132 TGAACTTCAGCCCACTATATCC 60 108501742 108501760 AGGATGCCACATTCCTCAG 60 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005 1 1 2 81 3 113252193 113253058 CACCTTGAACAAGGGATTCTC 59 113253098 113253119 GGGTAATGAAGAGTCTCAACTG 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923 3 1 2 106 7 143219714 143220816 CCAGTGAACATCTCTGTGGT 60 143219627 143219645 AAGGAGTAGCCACTGTTCC 59 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 1 3 3 80 16 20114286 20114305 TGGATGGTGAGACACATGAC 60 20114348 20114815 CCAGAAAGGACTCCATGCA 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000004972 1 1 5 80 X 71310806 71310826 TCACTACTTTCTCCAAGAAGC 58 71310515 71310535 CAACTGAATCGGTGTTCCA 58 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366 2 1 2 80 5 74067056 74074624 TGTGAATGCCCAGATTGGA 59 74066994 74067017 CTGACATTAGTATCCTGGAGACTC 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000051558,ENSRNOT00000010991 3 2 3 80 8 68281901 68281919 AGATTCCAAATAGTGGCGC 58 68275710 68281857 CTATCACATCCAGCACGTC 58 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 3 2 2 86 17 58301184 58301203 ATACTGTCAACCTTCCTCGC 60 58280156 58301137 ACTGCTGGTACTCAGATTGTC 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 81 11 81631770 81631788 CGACAAGTACAAAGCGGAG 59 81625154 81631729 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81636986 81637007 CCACAAGATACTCCAATGAGTC 59 81635619 81636945 TATATGCCGAAGAGACGGA 58 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000055336 1 1 2 81 7 143463259 143463277 CTCTGCAGAGTCAAGTGAG 58 143462325 143462346 GACTGAGGATCGTGAAGTC 57 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 3 1 2 126 1 29432190 29432209 CCTTGAATCGCTATCTGCTG 59 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000084906 3 1 2 85 12 2145514 2145533 CAGAACAAGAAGCAACCCAG 60 2145581 2148311 CTTGCGGTATCGAATCGAG 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000089525 1 1 3 98 3 95715314 95716109 GAATTCTGCAGACCCATGC 59 95716266 95716284 TCTCGTAATACCTGCCCAG 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 2 1 3 92 10 12048739 12048760 GCAAGGACTACAGCAATGTC 59 12048815 12048833 TTTCAAGACTCCTGGGTCG 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 3 1 3 93 10 12048739 12048760 GCAAGGACTACAGCAATGTC 59 12048815 12048834 ATTTCAAGACTCCTGGGTCG 60 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 2 2 2 113 6 109097472 109103608 AAGTACACTCAGGCTGAGG 59 109097377 109097395 CATAAAGCGGACCTTGGAG 58 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 3 1 1 60 14 86694857 86694876 CTGCAATTCTGGAGTACCTC 58 86690117 86690137 TCTTTAGAAGCATTACCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000044257 1 1 2 81 1 100319727 100319747 CAAGGCAAAGAGACTCTTCAG 59 100319785 100328076 CTCCTTGATGATGTAATCACTTGG 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 1 2 6 80 4 154715192 154716008 TTCACTCCCACCTGTTGTC 60 154716051 154716070 CTGCCATTTCTTCCTTGCTC 60 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000047118 3 2 3 81 16 3568403 3568421 AAGCAACACATTGAAGTGC 57 3568466 3618450 GTGCATCTACCTCAGTCTG 57 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 3 2 2 80 14 14982699 14986627 GCAGATCTAGTTAAGAAGATCTTGG 59 14982643 14982663 AAGTTCGCCCATTATTTCTGG 59 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 1 2 2 118 7 75578734 75579367 CAAGAAAGGAATTGTGGACCAG 60 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 3 2 2 81 1 196858129 196858148 CAAGTACTTCCAGTCTACCG 58 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 1 3 3 97 12 17743326 17745693 GAAGTATTGAGGAAGCCATTCC 59 17745751 17745769 CAAGAAGTTGGCCGATGTG 60 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 2 1 1 71 1 81594134 81594153 TAACAATGCTGAGAGCACCA 60 81593993 81594011 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 1 2 2 80 12 12880201 12880220 GGGAACCATGTTGTATACCG 59 12879930 12880158 GATGCTCGCTTTGATGGAC 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 3 4 4 82 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 2 2 2 67 12 2580354 2580372 TCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374 3 1 2 115 7 143162616 143162634 GGTGATGAACTCCAAGCTG 59 143161420 143161828 TGCTGACACAGACATTCAC 58 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 2 2 3 80 4 33640464 33640482 CTTCTTCAGAGAATCGCCC 58 33640525 33640982 AATTGAGGAATCAGCATCCC 58 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 1 2 2 80 6 110649115 110660491 ACAGACACTAAGCCAGATCG 60 110649054 110649073 GAAGACAGGCTCAAGTTCAG 59 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 3 1 1 70 X 72650794 72650812 GTTGACACAGCAACTCAGC 60 72651069 72651087 GATGTTGTTTCTGGGAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 1 1 1 60 13 36265310 36265329 GAAGGAGTTCAGCTTTGTGC 60 36258661 36258679 CATTGTGCTCAGCATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510 3 1 2 172 18 59069651 59069671 AAGAAGATGGCATTGTTCCTC 59 59059596 59067809 GCCAACTACTCGTTTGAAGTC 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 1 2 3 92 10 13306432 13308507 CATCAAAGGCATCCAGCTG 59 13308562 13308581 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000082591 3 1 2 105 1 141655397 141655868 TCCAGAAGAAATTCAACAGCAG 59 141654598 141655331 GCCACCAATCAAACTTCCA 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972,ENSRNOT00000082402 3 2 4 86 6 109669576 109673378 ACCTACAAAGGGACAACCC 59 109673428 109673446 ATGGTTCAGGTGAAGGGTG 60 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274 3 1 2 80 5 173066584 173066602 AGGAAGAGGAGGAAGAGGA 59 173066646 173067080 CGTCACTGACTTCTTCAGC 59 NA Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671 3 1 2 84 12 2910719 2910737 ATTACGGATGGAATGCCCT 59 2910784 2911405 CCTCTTCTATTAGGGCAGGG 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 1 2 2 80 19 52240450 52240468 CAGTGGAAGATGCAGACCT 59 52240511 52242699 GAGATGTGACCTCTTCAGGG 60 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000064050 3 1 4 123 1 215349782 215349800 CAGGATGTGGGTCTTCCTG 60 215329837 215329855 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000021306 1 1 2 80 4 179696351 179696372 TTCTAAATCCAATGTCCCAAGC 59 179695037 179696310 TTCCGTTCTACTGCTTGGT 59 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000000474 2 1 2 80 1 167076997 167077015 GAGAGGCAGAAACTCACTG 58 167077682 167083463 ATTCAGTTCTTCCACCTGC 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 3 3 4 80 8 70175531 70175970 TGTGAACGTGTTAGACTCCC 60 70176008 70176031 CTAAGTTCAATGTAGAAGTCCTCG 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031 3 1 2 99 X 127804672 127804690 AAACTGAATGAGCAAGGCC 59 127804753 127822350 TGGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000077967,ENSRNOT00000089775 2 2 4 80 12 14654881 14662274 CTACATCCTCAGGTACCGC 59 14654819 14654837 CAGTAGTTCACCTCTGGGC 60 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000085188 3 1 2 80 13 100302917 100306358 TTACACAGACCCAAATCCAC 58 100302856 100302874 CAGCCTGTCATAGTCAAGC 58 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 2 1 2 86 6 111286934 111286952 GGCCTAAGGGAGAGTACAG 59 111283008 111284761 AGATCAGAACCTTGCCCTG 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000080524 3 1 2 87 9 82724728 82724933 CTGAAGGATCTTCAGACTTCAG 58 82724981 82724999 AGGTTTCAGTGGTACTCCC 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000030352 2 1 2 80 4 22619751 22619771 TTTGGATATGTCAACCTGGAG 58 22619361 22619712 GGAATTAGACCTGTAAACAACC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000059545 1 1 3 80 7 27295122 27295140 CCCATCTTAAGACGAGCAC 58 27295181 27295207 CAGAAATTCCATTACTGCACTG 58 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000035317 3 1 2 85 18 73564366 73564385 CTCTTCATCTTCATCTGCGC 59 73564430 73603595 TCGAAGTACCTCTTGATGTAGC 60 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 2 1 1 62 4 180291583 180291601 CAGAGACACTCCGTTCTGG 60 180315486 180315505 ATGAACAGTCCAAGGTAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 1 2 2 80 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314248 116314402 AGTTTCCGGAAGTATATTTGGC 59 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000065542 3 1 4 84 15 924009 954150 CCGTGCCTTTGAAGATGAG 59 954198 954216 TGTGTTGGGTGAGTTCCTC 60 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 1 1 1 76 7 123088766 123088784 GAGCTTGATCTACACCGGT 59 123088706 123088725 GATAGCTTCTCTTAAGGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940,ENSRNOT00000074087 1 2 6 147 17 77195784 77195803 TATGTTGTTGGCTGTTGCT 58 77195914 77196911 CTTCGATTCCCACACTCTC 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928 2 2 3 91 13 48071614 48075035 CATCAACAAGCAAAGGAAGC 58 48071542 48071560 AGTCAGTCAGAGAACTGCC 59 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000090984 2 1 2 181 7 123100631 123101804 TGTAGGTGATGGCAAATGTG 59 123095890 123100490 AACCATCTCTATCCTTCTCCTG 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 3 4 4 80 12 747977 747998 TTCTTGGAGATGATCAAGTTCC 58 748036 751573 CTTGATAAGAGCGCTGATAGAC 59 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 1 1 1 60 14 115386429 115386447 TGACCCTTGTTGAAGATCC 57 115384903 115384922 CCGACTGGTAGTTTGTAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 3 1 2 82 10 10844878 10844896 GAGCTCTGTCTCCCATCTC 59 10841862 10844835 TGGGACACTGTCAGAATTAGAG 60 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 1 3 3 100 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613722 80614139 ATCAGTACCGTCAGTTCCTG 59 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 1 2 2 138 6 111176935 111180596 GCCTGTTCTCTATTCCTATTTCC 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000066849 2 1 2 80 7 123280378 123280396 AGGCCTATGGGCTAAAGAG 59 123280437 123280459 ATTAGTCAGTCTTCTCCAAGTG 58 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 1 3 5 80 20 3409193 3409317 ATCAGAAGCAGATTCACCC 57 3409131 3409150 GGATCTTCTTCCTTGACGAC 58 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546 1 1 2 80 1 256664564 256664583 AATGATGTAGTTGGGACGAC 58 256660618 256664522 CTCTCCTGTATTTGCTTCCA 57 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 3 3 4 80 X 70459695 70460242 TTCATCTCCAAGGTGATTCCA 59 70459635 70459656 ATCATTCACAGCTAGAACTTGG 59 NA InUTR Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 3 2 2 134 7 11241297 11241788 GAATGGACACAAGGGTGTG 59 11242245 11242263 AAAGCCACGTTCATCTTCC 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646 2 1 2 84 18 44879543 44891047 CAAGTGGACCATTGACCTG 59 44891094 44891113 AATTGTGATGGTCGTGTCAG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 2 6 7 84 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920368 102920386 CATGCAGAAGATCCAGTGC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 1 2 2 80 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777107 87777127 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 1 3 10 88 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248511 117248529 TACCATCAGCCTTGTCCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000081021 3 1 10 91 7 117253868 117257199 GTTGTGTAGATGAACGAGACC 59 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400 2 1 2 80 15 19814016 19814034 AACTGACATCAATCCCGAG 57 19811428 19813973 AAGATCCGTGCTGTTATCTG 58 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734 2 1 2 80 20 29322182 29322201 ATAACACCCAATGAGAAGCA 57 29330323 29336581 CCAGAATTCCTTTCCATCGA 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 1 4 4 80 7 142043311 142043439 TTGGACAAATATGGCTTGCG 60 142043250 142043270 CTCATATCCAAATGTGAGGGC 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000089142 2 1 3 80 9 90893523 90893541 CACAGATCAGATTCTGCCC 58 90893585 90898156 TGGTGTCACAGTGTACTCC 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000077962 2 2 3 172 1 260552342 260553753 AGAGCATCAGGAAAGAGCC 60 260552188 260552207 CTCTTTGAAGTGCAGCACAG 60 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000081245 2 1 2 80 14 106233394 106234245 GAGAGTAGTTCAGGATCTTAGC 58 106233335 106233356 TCTAGTTCTTGGAGAATGACCT 58 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 3 1 1 79 6 123034538 123034556 TCCAGAGAAGAGGATGAGG 58 123042373 123042393 GAATAACTGACTCCTCGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 2 2 2 80 6 111376568 111379715 GGAAATTGGGAACCTGGAC 58 111376506 111376524 TAGGTCAAAGCAGCTTCCA 59 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 3 2 2 95 3 175477710 175477730 GGTGGTAGACTACCTACTGTG 59 175476317 175477653 CTGTAGGAGACAGCTCGAG 59 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000081669 1 1 2 81 1 164129060 164141360 AGCTCTGTAATGGGCACTG 60 164128997 164129015 CCTTGGATCTGTTGAGCCA 60 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 2 2 2 80 2 248724343 248724495 CCCACGCAATATAGTTGATCG 59 248724535 248724555 TCATTAGCTCTTCCCTTCAGG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 1 1 2 80 2 248722153 248723256 CTGGTAATAGGTGTGGTAACTG 58 248723295 248723315 TGAAAGTTCTCCATTCAGACC 58 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292 3 1 3 89 2 154559855 154561756 GGATTTCGGGCTATTATCATATCTG 60 154561800 154561821 GCCAATGGTAAATATTGCTGGA 60 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000084238 2 1 3 80 2 154559801 154559822 GTACAGTCTGAAATCTTTCCCT 58 154559860 154561752 TATGATAATAGCCCTGTGTCGA 59 NA Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 1 1 1 101 3 11101670 11101688 GATCGTTGGCTGGATTCAG 59 11088901 11088919 TTTCCTTCCTGGAGATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 3 2 3 81 19 53638873 53639688 CAGAAGAACGCAAACAAAGAG 58 53639731 53639749 GCTGTAGAACCTACTGGGA 58 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625 1 1 2 80 16 2361179 2363370 AGAGGTTGAACAGACATTTCAG 59 2361120 2361144 CAATCATCCTGATATCTGTATGCTG 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365 3 1 2 81 12 12652931 12658160 TTGTTTATAAGGCCATGAGCG 59 12658968 12658987 AATCTTCGGCAGAAATCCAG 58 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545 2 2 3 80 12 11618849 11623969 CGAGAACTTCGAGAATGTCAC 59 11618789 11618810 AGAAATGTGAGAAATCGAGGGA 60 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 2 2 2 98 3 79258840 79258968 AAATCCAAGTTAATCCGAGTGG 59 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 3 2 2 98 3 79258840 79258967 AATCCAAGTTAATCCGAGTGG 58 79257514 79258783 GCTTCAGATCCTCATATTCCTC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000083528 3 1 3 81 14 114540310 114540382 GAGAATCAGATGGAAGGAGG 57 114540248 114540266 AAGCTCCATGAACTTGGTC 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000091890 1 1 2 83 4 163401038 163402335 TCATCACCCAGAGATGAGC 59 163400973 163400994 CTTTGTTTCTGATGCTCTTGAG 58 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 3 2 2 80 2 197981407 197981426 TCTGAAGTTCATTGCCAGGA 59 197975043 197981365 GTGAGGATTCTGTTCAGGGT 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266 2 1 2 80 X 122945062 122945085 CACTCAGAGAATTTCTCTACTGTG 59 122945124 122949392 TAAAGAGAAGCCTTTGCGC 59 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 3 2 2 80 20 13114818 13114979 GAAGATGATTGTCGAGGTCAG 59 13115021 13115039 GCTTCTTTGGACTTGAGCA 58 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 3 1 1 76 7 11322217 11322235 AAGCCAGACTCTGAGTACC 58 11323315 11323333 GGTTCTAGGTCCTCTAGCT 57 NA DesignNoJunction Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744 2 1 3 99 5 78446053 78446071 CTAGGAGGAGAATCAGGCA 58 78467493 78470065 CCTTCTATAACGTGTAGCAGC 59 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000065649 3 1 3 81 4 38338323 38338345 CAAGGCTGAAGACTTAAGAACTG 60 38338386 38338995 TCAGCTGAAGTTCCTGACG 60 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000012340 1 1 2 122 10 86680365 86684099 AGCTGCTGATGAAGGAGAG 59 86684185 86684203 CATGCATTCCGAGAAGCTG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 1 1 1 60 15 23604182 23604202 CCTCTGTGCTTTATCTTCTCC 58 23603592 23603610 CGTACATCATCTGCTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068177 3 1 4 80 16 23475372 23487947 AGTAATCTCTGTGATCATGGAGG 60 23487985 23488005 TTCCATGGTCCCATATTCTGG 60 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 2 2 2 80 X 110689439 110692687 GAGCCATATCAGACCTATTTGGA 60 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 2 3 3 92 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085531 83085549 AATTGCCACTCTCGATCCA 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 1 2 3 91 13 83085515 83085533 TACTTCGAGTCAGTGCTGG 59 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000086542 1 1 2 80 14 19416028 19416048 TCTGATACTTCCAAAGCACCA 60 19416087 19418442 GTCCATGTTGACAATACCTGAG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 2 5 6 80 20 3305443 3306023 GATGATGGAAGACAAATCTGAC 57 3306063 3306082 GCACAATGGTCTTCATATCG 57 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 1 1 1 94 1 257080061 257080079 CATGCTGTAGAGATCAGCG 58 257081922 257081940 TTGGGACCTATGAACCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000048900 1 1 2 131 19 43163689 43164288 CCATTGTGCAAGCCTTGAG 60 43166178 43166196 CTAGTTGAGCCAGGCTCTC 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 1 2 2 80 1 69817727 69817746 GTCTAGCATCACCTTTCCAG 58 69817789 69818578 ATTCCCTGAACAACACCCT 59 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008857 1 1 3 80 3 117430242 117430260 GTGCATGCTGAACATCTGG 60 117430304 117435554 ACTCCAAGACCAATTCCCG 60 NA Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 1 2 2 80 6 126216222 126216241 TTCCCTTCTCTGAAGAACAC 57 126216281 126239811 GCCTTCCAGGTACAATATAGAC 58 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000014733 1 1 2 85 4 147781981 147785027 GAGAGGAACATAATGACATCCTG 59 147785072 147788323 CTTCCCGATCTGTTTCCCA 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95222320 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538 1 1 2 81 4 177033411 177033429 CAGGGACAACCCTAACCTC 59 177026152 177033366 GCCATACACAACGTCTCCT 60 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000090779 2 1 2 94 17 78822723 78826622 GCTGTTCCCAGAAATAATTGCT 60 78826677 78826695 CTGACCATTTCTTGGCACG 60 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 3 1 2 99 1 151730101 151730119 GAGACGGCAAATCATCGTC 59 151730182 151782379 TTTCCGTTGGAGCTTAGGG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000050222,ENSRNOT00000078583,ENSRNOT00000091677 2 3 8 80 6 64838573 64838591 ACAAACATCAGTGGGATCG 58 64838633 64839958 AGAATACCAGCCTTCTTACCT 58 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 1 2 2 95 18 35780441 35780459 TATGAGGAGCGCATCACAG 60 35762729 35780383 CTCATCTTCCTCCCTGATGG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172 3 1 3 91 14 21068328 21072132 CAGCTGGAGCAAAGATTGC 60 21068255 21068274 ATCTTGTCTCCGAAGTCCTG 59 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925 1 1 3 143 4 85329175 85329194 CCTCCTCTGCCTATACTCTC 58 85314209 85320408 CAGTAGGAGTAGGGACCTG 58 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000081547 3 1 2 83 19 562362 562382 GTTTACAAGGTGGCTGCTG 60 562428 562448 TTCAGGTCCGTCTTCTATACC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496 1 1 2 81 1 15484258 15488399 AGAAGAACACAGTGTGCAC 58 15488444 15488462 CTGTCACAGCAGTAGACCT 59 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000091963 3 1 2 125 10 47812990 47824470 CTACCACGGCTCTACTTCC 59 47811326 47812901 TCCTGTTCTGCAACCTCTC 59 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 1 3 3 80 12 39693748 39693770 GCTATGACTATCTCAAGACTCTG 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291 3 1 2 80 4 99769699 99773146 GTTGAGATGGAGTCTCTAGCC 60 99773188 99773206 GGCTGTAATAGTCTGCCGA 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000046391 3 1 2 80 3 113126803 113126828 TATGGTTTCCTCCATTCCCTG 60 113126743 113126761 ACCACTCTTGACCTTCCTG 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000005853 1 1 3 107 13 47589317 47589340 GATGGAGGCAAACACATGG 59 47589571 47589589 CTTGGATTCCTCTGGTCGG 60 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000051371 2 1 4 80 16 6161307 6161325 CTGAACATGGTCTTCACGG 59 6155843 6161263 AGTGAAATAGTGCTTGGGC 58 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000063902 2 1 4 80 13 80441090 80441210 AAGCTTAGTGGTGCTTCCT 59 80441028 80441048 AGAGATTCATATTCCCACCGT 59 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000077347 3 1 2 81 10 10828697 10828938 TGTCCATGAGATGGGACAG 59 10828981 10829001 CCTCCATTTCTTCCCATTCAG 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000084860 3 1 2 80 2 244304783 244330131 CTATGATAGCCATGAGGGC 57 244304721 244304739 CACAGCGACCTTAAATGGT 58 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 1 3 6 95 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866 1 1 2 80 2 114413624 114423583 AGAAGACAAGATCACCGGA 58 114423626 114423645 CCGATGTCATATCCGAACTG 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 2 2 2 241 X 111122742 111122761 CTTCGAGAAAGAACAGCTCC 59 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086539 1 1 2 91 5 120459334 120459352 TGCACAAAGGATGTGAACC 59 120459404 120461032 GACTTCTCTGATTTCTGATCCC 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000044659 3 1 3 81 14 28609615 28609636 ATGGACAAGTTTCCTACATCTC 58 28536241 28609574 GTGGTAGAAATCCCTCTGAC 57 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000078495 2 1 3 80 4 158244431 158244449 CAGCGAGATGAATTTGAGC 57 158244491 158334051 TGCTTTGATCTCGTACATCTC 58 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 2 2 2 80 12 22197561 22197581 GGCTACAACACAGACTATGGT 60 22197355 22197522 AGACAGACCCTTGACATTAGAG 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 1 3 3 80 4 183406545 183408840 GAGTTTAAACGCCACAATTCTG 59 183406486 183406507 CTGGTTACTATAGCATGGAGAC 58 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 2 3 3 80 4 183408874 183408893 AGACTCTGTCTGGAAACAGG 59 183406539 183408831 GAGCATCAGAATTGTGGCG 60 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 3 3 3 80 4 183408873 183408892 GACTCTGTCTGGAAACAGGA 59 183406538 183408830 TGAGCATCAGAATTGTGGC 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318 3 1 2 175 1 22255249 22275914 TCCGCGGAAATACAAAGGA 59 22252400 22253289 TTCCTTTGACGCTGTTCAC 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 2 1 2 82 20 46236777 46236798 ATGGTTCGCAATTCTACATCAC 60 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000089744 1 1 2 80 2 243840143 243841152 GTTCTTCCAGAGGAAACCAC 59 243841193 243841213 AGCAACCTCCTGATTAGACTC 59 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000051362 3 1 2 81 18 1281377 1285575 ACGGAAATCTTCCAGTTGGT 60 1280839 1280859 AGCCAACCTTCAATTCTTGAC 59 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 3 2 2 80 4 22536909 22536927 GAGAAGGATTGGATGGCAC 58 22536970 22553083 TGATGCTGTCAGAACTTTGC 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000084281 1 1 3 80 4 100281086 100281109 GAACAATCACTCCTATCTGTATGG 59 100281146 100281685 CTATCAGGGTACCAGTAGTGG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080158,ENSRNOT00000080419 1 2 12 101 20 3358368 3360397 GATCCTATACCCGCTGCTC 60 3360461 3360684 AGCCACCTTCAGGAATTCTC 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075982 1 1 4 97 2 208573813 208576688 GGTCCAGGTTTGTATAATGGT 58 208573736 208573754 CAGGAAGAGGTGGTAGAGG 59 NA InUTR Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 1 1 2 80 10 104732211 104732992 GAGATGGGTCATGGAACTC 57 104732149 104732169 GTTGAGAATGAACTCTTGGGT 58 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000042372 1 1 2 80 10 104747511 104747532 CTATAACTTCCTCACTCGAAGC 59 104747450 104747472 CCATATTCCCTCATCTTTCCC 58 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 3 2 2 80 1 198411990 198412331 ACTATACTTCCAGGCCTGC 59 198412372 198412393 AGAAATTGAACAGGTACAGGAG 58 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365 3 1 2 81 4 83527389 83527408 GATGATTCATAGGCACAAGC 57 83527451 83540414 TGGAGTCTGATCTGATAGCA 58 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 2 2 2 80 2 195667316 195668200 GAATCATAGGGAGAGGCGG 59 195668243 195668262 CTGATTCCTTGTCGCAAGTG 60 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 1 2 2 80 15 4082977 4082995 AGTGGAACTTGGCATTGAC 58 4083039 4083813 ATTGCCGTCCTGTTAAAGG 58 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000083665 2 1 2 94 6 123290817 123290835 GAGAAATGGAGCCCTTCTG 58 123211233 123221568 CTGGAGAAACTGCTTGTATCTC 59 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 1 3 3 121 12 22753562 22753580 ATGACGACATCCGTAGAGG 59 22751134 22751550 TTCATATTCCTTGAGCCGGT 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000086957 1 1 2 144 8 53417367 53420422 GCAGCAACCCATATCTTTCAG 60 53420525 53420546 GAAATATCCAAGACTCTGGCAG 59 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337 2 1 3 80 2 144917460 144922289 TTCTGTAATAGCACTGGACCA 59 144922328 144922349 CAATACATTCCTGGTTGTTGGT 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 1 3 3 83 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63079 63097 CAACTGAACAGTGAGAGGC 59 NA Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 2 2 2 80 12 23789862 23814661 TGAAGAACGTGACAGAGCT 59 23814705 23814723 CAACCACGTTCTTGTAGGC 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 2 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671840 CCCTTCATACTTTGGTATTCCTG 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049 2 1 3 80 20 3319641 3319783 CTGGCTCAATAACTACCTTCAG 59 3319823 3319842 CAGACATCATCCAGAAAGCC 59 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844 2 1 2 81 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838631 43839357 CCCAACAATGACTCTTCCT 57 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000085089 2 2 3 80 14 34783084 34783553 GTGATTCCAGATGACAGCC 58 34783596 34783615 TTTGTTCCTGTCTTCCAGAG 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970 1 1 2 86 8 79685458 79687524 GCTCTAGATTTCAAGTCATCGA 58 79687568 79687589 GTTCTGAGTTTCAAAGGTAACC 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970 2 1 2 87 8 79685457 79687523 TGCTCTAGATTTCAAGTCATCG 58 79687568 79687589 GTTCTGAGTTTCAAAGGTAACC 58 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086 1 1 2 80 15 61879868 61879886 AACAGAATCCAGATGACGC 58 61879927 61880487 CAATACCATCACAGTATTTCCC 57 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 2 2 2 80 8 94841370 94841390 CTGACTATACCTGGGAATACG 57 94841431 94850097 CGATGGAATATTTGTGAGCC 57 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494 3 2 3 101 19 9774386 9780740 GGACTGGAAGGAACATGAC 58 9774303 9774321 TCGTGGTAGGTAAGGATGG 58 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 3 2 2 89 17 82080657 82080676 TTCTTATGTGGGACATCGGT 59 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 1 2 2 80 2 196170166 196171201 CATGCAGCAAGGTTCTCAG 59 196171244 196171263 ATGCTCATGTGGAACCTCTC 60 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000041140 2 1 2 84 10 71547070 71560739 GATGATGGACTGAAGGCAG 58 71560787 71560805 TTCTGATTCCCTTCCCTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 2 5 9 92 9 81537272 81537291 TTGGAAAGGTGTTCATGCAG 59 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000031236 1 1 2 130 1 91696457 91696475 GTGTCCTCAGAAAGCAGGT 60 91696563 91697348 CTCCAGCATCAAATACTTAAGACTG 60 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000031236 2 1 2 132 1 91696455 91696473 TGGTGTCCTCAGAAAGCAG 60 91696563 91697348 CTCCAGCATCAAATACTTAAGACTG 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052 1 1 2 136 10 109964974 109964992 GAGAACTTGCAGAAGCTGC 60 109943872 109964575 TCAAATAATCGTGTAGGGTCCT 59 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000072663 3 1 2 80 3 148422370 148422389 GCACTTCAAAGAATGTGTCC 58 148421878 148422327 GTGAAAGATAGGCAGTGCA 58 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530 3 1 2 104 17 90701053 90701075 GTCCCAGATCTTACTTCTTTGAC 59 90701139 90745596 TTCCACCATTGGACCTTCC 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634 2 1 2 80 4 161641633 161641651 CCAACTACCTGGTCTCCAC 59 161640818 161641591 TGAGATTGGATCTGAGTTTGC 58 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 1 2 3 80 19 10149366 10149668 CCCTAGCCTTCAAGAGACC 59 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000066101 1 1 2 89 3 116950081 116950099 TTGCATTGCATCACGAGAC 59 116950152 116950522 TCTTCGGTTAACAGCAGCA 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778 3 1 2 87 20 21935558 21941625 TTGATCTCAGCATTGATTCACC 59 21935492 21935511 AGGAACTGTCCATTGGTCTC 60 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476 1 1 2 81 9 94319010 94323058 CTTTGCCTCTGTGGAACAG 59 94323103 94323121 ATGAAAGTCACTGTGGCCT 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 1 2 2 80 10 13736556 13736682 ACTCTGAAGAAACGGAAGGT 59 13736725 13736743 AAGCCAAATCAGGATCCCA 59 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273 2 1 2 87 13 50145518 50145536 TATTCAGAAGCAGTTGCGT 58 50145587 50149551 TTTGACCACTCTGATTGCC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000081649 3 1 2 81 10 72417054 72472480 CCTTGGGAGTTTGAAGTTACAG 59 72416994 72417016 TGTAATATGAGAGTCCACAGGTC 60 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 1 2 2 80 4 88868767 88868786 CTTCCTTGACGTCATCAACG 59 88868827 88871435 TCTGTCTTGTTTGCTTCATGG 59 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 2 2 2 80 1 64048836 64048998 TCTGGAGAGGGTTACCTAGAG 60 64049040 64049058 CAGATAGGTGATGGCCAGG 60 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000090265 2 1 2 80 18 77384143 77394662 GTATTCTCCTGCGAGAACG 58 77384081 77384099 TCTGTCCCATAGGAGACAG 58 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974 2 1 2 85 16 32833573 32833592 TCTTCGTCGATAATTCAGCC 58 32832511 32833527 CTGGAAGACTAAGTCCATCTG 58 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000015516 2 1 2 83 6 127651198 127651216 AAGATGCAGCAGGTAGAGG 59 127649638 127651151 CAAATCCAACAGACTGGGC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 3 1 3 82 14 34145112 34145135 CTCTTTCCTAAGCACTACATTAGG 59 34142886 34145074 GCCTTATCTGGTTACTAATGCA 58 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 3 2 2 83 1 74978363 74978383 CTTATGGGACCGAATTTGTGG 59 74978423 74985459 GAAGGAAATCTGAAGGAAATGAGG 60 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 2 2 2 80 2 93795275 93795887 GAAAGTGAAGAGCATCATAACC 58 93795927 93795946 TTTATGGTGGTCGACTTTCC 58 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000019245 3 1 2 82 1 114507029 114507177 CTGCACAGGCAATGAAGTG 60 114507223 114507241 CTCCATCAGCCATCAAGCT 60 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 2 2 2 80 12 25227391 25227409 CAAGAGGGACAAAGAGGTG 58 25227453 25229567 CACTTGTTCTCGAGAGCAC 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000054753 3 1 2 97 1 253242743 253243464 CTCAAGACATCAAGTAAGAGCT 58 253244517 253244538 TGGATATTATTGATTCTCCCGC 58 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448 1 1 2 80 14 36174392 36180785 TCACCTGATCTAAGGAGATTACC 59 36174334 36174352 CCGTCTTCCTTCTACTCGG 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000046854 1 1 3 101 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034752 51035430 ATTCTGAGGCTACCTCCCT 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330 2 1 3 82 X 142247718 142247739 CTAAGTGTCACGAAATCTTCTG 57 142129518 142247675 CTTAAGCTGAGGCTCTTCG 58 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 2 2 2 80 18 3208710 3208729 AGCTTGCATCAGTTCTTCAG 59 3208770 3210209 CAAATGACATATCGTGGTTGC 58 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 1 2 2 80 3 113320574 113320763 ACCTATGAGGTATTTGCCGA 59 113320805 113320824 GTGCTTCATTGTTCTAGGGT 58 NA Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 1 1 1 60 X 152109991 152110009 TGTTTAGTGCTCTGCAGTC 58 152108542 152108562 TGTAACTTCATACCACCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 1 2 2 80 7 130145797 130145815 CGGGTAGAGGATGATGCTG 60 130145004 130145753 CACATCAACGTGGTCTTGG 59 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 3 2 2 86 4 52162193 52162211 CATAGGAGAAAGTGCTGCG 59 52162261 52164310 TTTGTACAGTTCTCCGCAG 58 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 2 2 2 80 7 142326898 142326916 CTGGTACCTGCACAATGTC 59 142326487 142326856 CCGAGATTCTTGATAGCTCCA 60 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 1 2 2 80 17 81222922 81222942 GTTGAATACTGCTGAGGACTG 59 81222984 81233695 CAATCTTTAGGCCCTGTGC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459 2 1 2 82 1 114318333 114318351 GAAAGGCTCTTGCATGTGG 60 114318397 114320294 TGCAGTGTTTCACCAAAGG 59 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002981 3 1 3 86 14 34480764 34484605 CAGTAGTCAGTTTCAGCTTTCAG 60 34484651 34484669 GCTTCTATCATGCGTGTCC 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 1 2 3 80 9 95135120 95135138 TCGTCTATACCATGGCACC 59 95132699 95135077 AAGAAGTCTTCCTGCCTCTC 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000064557 3 1 2 84 3 8962280 8963395 CTATAGCAGGCCCATCTCC 59 8963440 8963461 GGTTACTGTGTACTCAAACCAG 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000086447 2 1 2 80 3 1547488 1547511 ACAAGAGAAAGATGGGATAGTG 58 1547164 1547182 CTTTCGAGGACCACTACTG 57 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 1 3 3 80 4 156063902 156064911 GGAAGAACAGGACTTCATCAC 59 156064953 156064971 TGTCGATGACCTGAATCCC 59 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 1 1 2 81 4 161728494 161728983 CTTTCCCTCAAGGTAGGCC 60 161729027 161729046 TCACAGTACTCTCGGTAGGA 59 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107 2 1 2 84 2 198997300 198997320 CTGATTAAAGAGGACGACAGC 59 198997366 198997755 CCTGCTGTACCTCCTTGAC 60 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 2 2 2 80 1 217027263 217027283 GACTTCTGCCACAGATTTCTG 59 217027321 217027951 CTTATTTACAATCCCTGCTGGAG 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000043182 3 1 3 166 15 35002229 35002420 GAGAGGAGATTGTTGGTGGT 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000072263 3 1 4 80 5 127579904 127579923 CTACTTCCAGTTCCCTGGAG 59 127579966 127605493 AACATGTTCCTGGAGACCA 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000006403 3 1 2 103 6 42255542 42255566 GGGTAGAAGAAATCAAAGCATCC 60 42256291 42256310 TATGTCACTGCTGAGCTCAG 60 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 1 2 3 80 2 250763783 250765227 TTGTCGGATATGACAGGAGG 59 250763722 250763740 GGAAATCCCACTGAAAGCG 59 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140 2 1 3 104 1 231498135 231498155 ATTCCTTTCCTGTCCCAAGAG 60 231458533 231482703 GAGTTGTTGCCCAATGATGG 60 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 1 1 1 60 1 163807146 163807165 CTACACAACAGTGAAGTGGG 59 163809700 163809719 ACTTACACTTCGTTTCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 3 3 3 80 12 30069029 30069047 ATGATCCATACGCCAATCC 58 30051546 30068985 CTCCTTTATGGACCCTCCT 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77287181 77290477 ACTACTCCTACTGTAGCACC 58 77287120 77287138 TCTTTGGCTTGTCACTGAC 58 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 3 2 2 80 X 10404716 10405255 GGAAATACAGATGCTGGCC 59 10404654 10404675 TTCTCTGAAGTAGACCCAACTC 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633 1 1 2 80 4 181412157 181412175 AAAGTGGGAAGAGGACAGC 60 181412666 181414737 TTTCTGTCTCAGCTAAGGTGG 60 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023574 1 1 2 93 1 205013816 205040517 GATTTGTGAAGGTATCCGCC 59 205013742 205013760 TTCCACAGTGCAGTCTCTG 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 127 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800563 53848210 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000079004 1 1 3 133 2 123348732 123348750 TCAGTCTGGTCCCTAGTCC 60 123333940 123348638 CATTATCTGCCTGGACTTTGAG 59 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639 1 1 2 80 16 39994276 40025154 TAAGCCAAGGACAAGGATCC 60 39994215 39994233 TCCTCAGAGCAAGAAGACG 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 2 3 3 80 4 162017579 162017597 AGTCTAGCTGACTGTGGTG 59 161953932 162017537 CAAGTTCCGTAGGAATCTCAG 58 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000072073 1 1 2 80 1 261177911 261177930 CCCGTGGTATCAGTAATGAG 58 261171649 261177871 AATTTCTACCTTACAGGTGACG 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028237,ENSRNOT00000092008 3 2 7 97 1 83711763 83711781 TCCTGTGTTCACCATCCAC 60 83711842 83711909 TGAACTCCTCAGCTTGGTC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008 2 1 7 117 1 83653843 83714394 TTTCAAAGGCTATGGCGTG 59 83714475 83714493 GATACGCTCCTCTACACCA 58 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 1 2 2 80 15 35415511 35415657 TGTTAAAGCTGAAGAGTAAGGC 59 35415452 35415470 GTTTCACTTTGACGTTGCG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 3 1 2 81 4 123518705 123519059 CAAGTCCCAGATTCTTCTTTCAG 60 123518646 123518665 CCAAAGGACTCCTCCTTAGC 60 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575 2 1 2 81 11 72805387 72806224 GTAACTTCATTAGGCAGGAACAG 60 72805328 72805347 CGGAATAGATCTGCAAGGGT 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000088235 1 1 2 80 4 57833051 57833069 CGAGGCAAAGGGATATGGA 59 57833111 57833909 TGATGAACTTGGTTCTCATGG 58 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 3 2 2 80 18 11780757 11780777 TGAAGCCTGTAAAGATGTGAC 58 11779027 11780718 TCCTTCAAACTAACTCTTCCGA 59 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 2 1 3 99 X 10130008 10130026 AGGATGACCACAACTGGTG 60 10130089 10134384 GCAATGCAAGACCATTCCT 59 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 3 1 3 100 X 10130008 10130026 AGGATGACCACAACTGGTG 60 10130090 10134385 GGCAATGCAAGACCATTCC 60 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026 2 1 3 81 2 199870836 199870854 TGGAGCAGTTCATCGTGAG 60 199869701 199870547 CAGGAATATGGCTCTAAATTAGTCC 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 3 2 2 124 8 72742852 72743537 TCTGGCTAGAGATCTATTACACC 59 72743619 72744253 TAATCTTGTAGCAACCTGGAC 58 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 1 2 2 80 15 3094069 3094087 AAAGGTGAACTCGAAGAGG 57 3056949 3094026 ACATCATTTCCTGTAGCCAC 58 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737 1 1 3 81 5 59506500 59506519 CTACAAACAACCCTTCGCTG 60 59507732 59508707 TTCTGCTGCCTGTTCTAGG 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 2 2 2 90 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187096 184187115 TATAGTTCTGCACCAGTGCA 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 1 4 4 80 17 4256429 4270621 ACAACACGAACGAAGAAGG 58 4270665 4270683 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000084432 2 1 2 96 10 59868425 59871367 CTAATCTGCAGGATCAAGACTG 59 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 3 1 1 61 7 114944353 114944373 TATGGATATGGTCAGCATGCA 60 114944311 114944329 GTGCTGAGGATGTGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369 1 1 2 108 3 122946280 122946944 GGACTCCATCCAAAGAGCT 59 122946081 122946099 CTGTTCAAAGCTCAGCTCC 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000078987 2 1 2 90 9 92628697 92628720 CAGGACTGTACAAAGGATAAATGG 60 92628767 92629388 ACGTGCTTGTGTATAATCACC 59 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425 2 1 2 88 11 82633946 82633964 TACAGGACGAAAGCAAGAC 58 82632575 82633894 TTGAGGAATCTCATGTGGC 58 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 2 2 2 80 12 30795657 30795675 AAGATGGGAGTTACCTGCA 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 3 2 2 80 4 86223630 86230710 CCTGTGTTCTTGCACAGTC 59 86230751 86230772 TCAATTTCCTCTAAGTGCTCCT 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 3 3 3 80 7 40308220 40309524 CCCATATGGGCTAGGAAGC 60 40308158 40308176 GTAGGCAGGTTTCTGACCT 59 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 1 2 2 80 15 33382929 33383507 TCCTTACAAGAACCTTCCTAGAG 59 33382871 33382891 TAGGCGATATTAGCAAAGACG 58 NA Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 1 2 2 80 6 102013315 102013336 GAACCAGCATAGATTCTGTACG 59 102013377 102014732 TCTTCAAGGACTGTGCTCG 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 3 2 2 80 10 49295570 49295890 CATGTTTCATCAGATGATGTGG 58 49295931 49295949 TGTTATAGGGACCTTCCCG 58 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 3 3 3 80 1 275853854 275853873 TTTACCAGGTTTGTCACGAG 58 275853244 275853811 CTTCCTGGTCATCTTGCTC 58 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000064836 3 1 2 138 1 8857106 8878044 GGCCTACTACTCTTAAGAAACAG 58 8856990 8857008 TTGTGAAATCGTCCAGCTC 58 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000085646 1 1 2 80 6 104288058 104289629 TTGGAATTACCGGTGATTTCTC 59 104287999 104288019 ATAGTCAGCATAAGTCCTGCC 60 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000012112 1 1 2 80 5 129170523 129175593 CGTCACCTAATGGTTTCTTTAGTC 60 129170466 129170487 AAGCAAAGAATCCAATTCCCAG 60 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 2 3 5 80 2 1493436 1494357 CAGCCAAGGATAAAGATGGA 57 1489834 1489853 CAATCAGCTCTGACTCACTC 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 3 3 5 80 2 1494399 1494417 AAAGGCAGGAGAAATGTGG 58 1493435 1494357 TTCCATCTTTATCCTTGGCTG 58 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 1 3 3 80 6 132777441 132777460 CTTTCCCGAAGATCTTCCGA 60 132777175 132777398 TTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 2 3 3 80 6 132777441 132777459 TTTCCCGAAGATCTTCCGA 58 132777174 132777398 ATTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000065748 1 1 3 83 11 11086249 11089576 CAAACATGGCACATTCAAAGC 60 11086186 11086204 AGAAATCAAGGCTCCGGAC 60 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000084236 3 1 2 106 12 37012438 37012594 CCTCTGTGCTAAGAGGGAC 59 37012664 37012682 GATAGAGCCTCGGTAGCTG 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230 2 1 2 80 6 132510959 132551404 TGAAGAATTCAGCGAACAGAG 59 132551444 132551464 GGTACCCATTTCTTACTGGTG 58 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 2 2 2 80 16 48966311 48966330 ATGATGGCCCTTGTTTAGGT 59 48962839 48966268 CAGCCATTTCTGCAACCTG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000044638 3 1 7 90 3 48198910 48198928 CGTTTCTCCTCAGTCTGCT 59 48198980 48204882 AAGATCAACCTTGCTGAAGTC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 2 3 4 81 17 34831305 34831323 AGTCTCTGAAGAGCTGAGC 59 34831368 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 1 2 5 82 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 3 2 5 83 13 55114476 55115291 AGATATCTCCTCAGGTGCC 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 3 2 3 83 5 167992676 167992694 CTCACGAAGTAGGCTTTGG 58 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 1 2 2 88 7 12877159 12877177 CTGATCTGCAAGTCTGAGG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000085516 3 1 2 110 18 24874192 24879958 ATGGAGTCATCCAGGTTTCAG 60 24880030 24880048 CACTGCATGTGCAGATCTG 59 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 2 2 2 80 10 55925364 55925384 AGTACAAGCTGATGTATGGGA 59 55925425 55925784 AGCCATCCTTCATGTCTAGC 60 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 2 2 4 80 4 163845295 163845313 GATGTAAACAGACCTGCCA 58 163838420 163845251 GGAACCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 2 2 4 94 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583965 4584133 CACCATTCACTCCTCTGGG 60 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 1 2 2 80 18 24749262 24749280 AACTGTGGCTCAATGTGAC 58 24748781 24749218 TGTACTTGGGTAGCTCCTG 58 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000079599 2 1 2 80 7 114507042 114507061 TGACTATGCCGAGATCATCG 60 114504784 114505860 TAATCCCTGGCTTCATCTATTCC 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000075078 1 1 3 80 1 217565147 217573321 ATTGGAGGAACTCGATAAACC 58 217573362 217573381 GATTCTATGGCCACGTTCTC 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000057095 3 1 3 81 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492977 134494137 CTTTGTCACCCATCTTGTGC 60 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000078650 1 1 2 80 2 124205976 124277549 TAGACAAGGCTCTGATGAGG 59 124277592 124277610 TTTCCCTTCTTGTTGCTGC 59 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922 1 1 2 80 1 98519255 98519696 CGTGACAATGTATCAGTCCC 59 98519194 98519212 GAGGAGACGTAGAGACTGG 58 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404 2 1 2 81 3 123597650 123597670 ACTCCCTGATACTCATCTGGA 60 123597500 123597607 CTGGCACACCATTCTAGGT 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 2 3 4 80 10 24017207 24017228 CTATGGTTTCCAGAGGTTACAG 58 24017267 24035409 TTAAGGATCACTTCCTTTGGC 58 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686 3 1 2 80 7 130036129 130036147 GACATAAAGGTTGGCTCGG 59 130036191 130036961 TTCATTTGACCGCACAGTG 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 1 2 2 80 18 26576489 26577310 GGAAGCATATCCAGAAGGAG 58 26576428 26576449 CCACTTTAGTGTATGGGATCTC 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 1 2 3 100 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654709 120654727 AGGATGAGACATTGGCAGG 60 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287 3 1 2 81 1 261428422 261430028 AAGATGCAATAGAGGAGGACG 60 261430071 261430089 CTGAGGAAGCCATTGTCCT 59 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 3 2 2 81 2 203828156 203832078 CATCACAGCCCTTGAAACG 60 203832123 203832141 CAAGTCAAAGGAGTCGCTG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 3 2 3 80 12 37627111 37627130 ACATGAGCTCTGGTGATGAC 60 37627172 37628218 TTAACCATGGATCGTCCTCG 60 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894,ENSRNOT00000091565 2 2 2 63 9 16538282 16538300 AAGAAGCTTCCACAGACAG 57 16538891 16538909 AGTACCTGACGTTGTGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000091216 2 1 5 80 10 56194525 56197197 TACCAAGGCAACTTCATCC 57 56197243 56197263 TAATTCCAAGGCCTCATTCAG 58 NA Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 3 2 2 82 9 16818503 16818521 GATCTCGCTCAGTACTGAC 57 16817704 16818457 TATCAGAGTTGAGCACGTG 57 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040 2 1 2 80 13 56837130 56843507 ATGCAAAGGTATCTTTGGAGG 58 56837070 56837089 TTTAAAGGCCTCCTGTTGAG 58 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000008312 1 1 2 80 6 56036507 56158176 TCACTCACAGGATGAGCAG 59 56158217 56158238 TTTCTTTCCTTAACCAAGGCAG 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000040204 1 1 2 148 9 15640625 15646336 CAGATAACCACTTCTGATGAGC 59 15639804 15640521 GGCTCGTGTACTTTAATAGAAAGG 60 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 3 2 2 80 11 87693880 87693902 TATACACTTCTGAGCTAGAGCTG 59 87693940 87698488 TTTCTGGTATCTGAAGTTGGC 58 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000048344 2 1 2 81 16 6971785 6971804 CTTCATCACCAACTTCTCCA 58 6973440 6973459 TATTGCTTCTGGCTTCAGC 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000090264 3 1 2 89 18 27086606 27087893 ATGAGCTTGGTAGGAAGGC 60 27091191 27091210 GTAACTCTGCAATAGCCTGC 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000090831 3 1 2 96 12 37519725 37524809 CAAGCGACTGCTCTTTACG 59 37524869 37524887 GAGGGACACGAGTCTTCTG 60 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 3 2 2 80 13 67074211 67085160 CTCCATTCAAGGAACTTCTGC 59 67074151 67074172 ACACGTAAGGATCAATCTTTGG 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 3 2 2 80 8 116443729 116443748 CATGTTAGAGGAGGTGGAGG 59 116442988 116443175 TACAGTTGTTGCCTCTTGGA 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000037097 3 1 2 81 5 152629969 152629988 TGGACCCTTATGAAGGTCAG 59 152630032 152633712 TAGTCCTCCTTCAGGTCGA 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898 3 2 3 115 18 25199539 25206121 AATTGCCAAGGCAGAAGAG 58 25206344 25206362 TGACATAGAAACCCACACG 58 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653 3 1 2 81 1 217789475 217789493 ACGGAAGCAGATGAGACTC 59 217786774 217787352 TCTGGGATGATCCTTGACAG 59 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 3 2 2 80 2 22073910 22073928 TTGTGGTGTTCAATGGTGC 59 22070371 22073869 GAACCATTAAGCCATCTTCGAC 60 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 2 2 2 80 5 131920215 131933400 AATACAGCAAACTCAGAGCT 57 131933442 131933461 GAGTTCTAAGTTTCCACCCA 57 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 2 2 18 81 1 43637403 43697828 TACAGGGACAGACCTAGACC 60 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000028786 1 1 2 90 9 16754373 16754632 AAACTGGATAAGGAGGCCG 60 16754686 16754704 TACTGAGAACCTGCAGCAC 60 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000091650 3 1 3 193 7 12668224 12668247 GTATGCAGGAGTTCCCTCC 60 12666369 12667429 TCTCAGGGTTCAAGTTGCT 59 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 3 2 2 81 18 28654625 28654643 GACTGGCCATCAGATTTGC 59 28654687 28655897 AAGCATCACCTTCTCCAGAG 60 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 1 2 2 139 X 15348426 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451890 AAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093 3 1 2 88 14 77309761 77309779 TGTCCCATGGAAAGTCCTG 59 77309327 77309710 GTTGAATTTACCAGGCTCCC 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165310580 165310601 GGGATGAATGTAAACAGACCTG 59 165176326 165310539 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 3 2 2 81 2 250733892 250736670 CAGCCAAATCCAAATGCCA 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000026920 2 1 2 85 9 17819194 17819385 CTAATGCTTCTGATGCCCT 57 17819434 17819452 AATCTTCAGCTCTTTCCCG 58 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 2 2 2 80 17 9625116 9626019 TACTTCAAGAGGTTCTGTTTGG 58 9626060 9626078 CTTGAGGCTGAAGTTGGTC 59 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 1 2 2 80 6 106539141 106548951 CATAGAGATGAGCAAAGAGCC 59 106548992 106549011 ACCTGGTCCTTCAGTATCTC 58 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 2 2 2 80 X 15156406 15156425 GGAGCTATACTCACAGCTGG 60 15156465 15156574 AGTCCTACTTGACAGTCATCTC 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000057435 3 1 2 80 12 40447491 40448820 AGTTTATGGAACAGAAGGGTG 58 40448862 40448880 GTGAAGAAAGGAAGGCCTC 58 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000061992 3 1 2 80 4 7258310 7258826 AAGAATAGCTCCTTAGCACCT 59 7258867 7258886 AAAGGACAGTCACCTCATCC 60 NA InUTR Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 3 2 2 99 4 7259172 7259190 ATGACTCTGAACAGGTGGC 60 7259526 7259544 TAGATGAGTCGAACCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 1 2 2 83 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734 2 1 2 126 1 16822454 16827567 ATCTCACCATCAACAGCTG 58 16827654 16827675 GGTCGATTTCACTTAATTGGTG 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163 1 4 6 81 9 17344346 17347174 GAAAGCCCATGAAGTGGTG 59 17347219 17347237 GAAGATGTCCACCAGGGTC 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637 3 1 6 83 9 17350342 17351514 TTTAAATCCTGGAGCGTTCAC 59 17351559 17351577 ACATTTACACGTCTGCGGA 60 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027590 2 1 2 97 1 167246471 167246490 CAAAGAAGCTGAAGACTGCC 60 167246391 167246411 TTCTCTACCTGAGGTGGGT 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027590 3 1 2 98 1 167246472 167246491 TCAAAGAAGCTGAAGACTGC 59 167246391 167246411 TTCTCTACCTGAGGTGGGT 59 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 3 2 2 80 8 118622604 118622623 TGACTTCTTCCTCCAGATGC 60 118622665 118622818 TTGTTCAGGTCTGCTAGCTC 60 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 1 2 2 80 6 24163120 24181541 CCTATCAGATCTTTCCCGACC 60 24181583 24181601 GTTCCACCACTATGGAGGG 60 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 3 1 1 61 6 141488230 141488249 AAATGCAGCTGGATCATCCT 60 141487841 141487859 TGGACTTCTGAGTTGACCC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 1 2 2 82 8 19888890 19890688 GTCCTTCTCCAGATTGGGA 58 19890734 19890752 ATCAGATGCTTCCTTCCCA 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 2 3 3 80 11 20567349 20570172 AAGATGATACTTGAGATTGCCC 58 20570213 20570231 CGTGCCTATACGGTTAGTC 58 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000072855 1 1 3 91 10 54155880 54156665 CAGCAATTCAGAAGCCTGG 59 54156720 54156738 AGACAAGTAGCTGTGCCAG 60 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000072855 2 1 3 92 10 54155880 54156665 CAGCAATTCAGAAGCCTGG 59 54156721 54156739 GAGACAAGTAGCTGTGCCA 60 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000070864 3 1 4 82 1 128267097 128267115 CCTTCTCAAGTACACCGAG 57 128243012 128267054 GGCCTTTCTTTCTTAAAGTCTC 57 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150 1 1 2 86 10 87227651 87227753 TGGTTCCAAGAGAAGAGCG 60 87227583 87227601 TTCCGTCAGCTCATTCCTG 60 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 2 3 3 80 10 74457424 74467244 GTAGAACATCAGTTGCGGTC 59 74467284 74467305 AACTTGCTGGAACATCATTAGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 3 3 3 80 10 74467290 74467309 GATGTTCCAGCAAGTTCACC 60 74467349 74471254 ACCAATTCACTGGTAAAGTCTG 59 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000034283 2 1 2 103 16 8578292 8578311 GAGCCTTGTTGACATGAGAG 59 8578206 8578226 AAGATTGCTTGGCTTGTGG 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 2 2 2 80 X 15099611 15099631 CAACTTCAACACTGATGAGCA 59 15099673 15099968 TCCTTGACAACAACCACCT 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367 2 1 2 115 X 15100049 15100706 TGAATGGAGAGTCCCTGGA 60 15100785 15100803 TCTAGAGTAGCTGCGACCA 60 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000015223 3 1 2 81 9 20114209 20114227 ACACATGTGAGTTCGTCAG 58 20111972 20114164 GTTAGGTTGGCTACAGAGG 57 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 1 2 3 87 4 58839566 58892953 CCAGGATAATGGAAATAAGACTGAC 60 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000015084 2 1 3 81 1 136691158 136697363 GAAGGTGTTCACGGTTTCC 59 136691095 136691113 CCAAGTCCCTGTTGAACTC 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786 1 1 2 87 1 255564512 255582142 GTCTCCAGACTCGATCGTC 59 255582193 255582211 CTTCTCCAAGTTGCTGTGC 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664 3 1 2 88 7 15785462 15785480 CTCTGCTGGATTCCTACCA 59 15785530 15785767 TTCCTCTGTCTTTCCTATGGA 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000075317 1 1 6 85 12 41302675 41305880 CCTATGATGTCCTGGAGGG 59 41302580 41302598 CTTCCTGATGAGACTGGCA 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500 1 1 7 80 19 15189762 15334677 TTGCTAGGAATAGGAACCCA 58 15334718 15334738 CAATCTGCAAATACCCTTCCT 58 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000086460 2 1 2 80 13 68771828 68771943 TGTGGATTCCAAGTCTACAC 57 68771767 68771786 CCATTTGTTTCTTGGTGCTC 58 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 2 1 1 60 1 5381537 5381557 TCCAGAAGGAAATTCATCCTG 58 5387064 5387083 AAATGCAGTACTGAATCGCC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 3 1 2 85 20 4120113 4124691 TCTGAGAGGATCAGTGTCTC 58 4124739 4124757 TGTGACATTCACTCCTGCT 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 2 1 2 88 20 4120113 4124687 TCTGAGAGCAGGATCAGTG 59 4124739 4124757 TGTGACATTCACTCCTGCT 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000088313,ENSRNOT00000045532 2 2 4 80 2 18522665 18525806 TTTATCTACCAGGACCTGATCTC 59 18522607 18522630 CATAGGAAGTCTCAGTAGGATAGC 60 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000087534 3 1 2 125 1 165646264 165646285 GAAAGACATCCTTGATCACCAG 59 165647882 165649293 ATAATTGCAATCGCACGGT 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698 1 1 3 80 12 37396612 37398124 TCCGAGACCTTATTCAGGC 59 37391633 37391655 GAATATCAGCTCTGGTGATTTCC 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000051060,ENSRNOT00000042581 3 2 5 118 11 27812387 27831347 AATGACGTTGAGCAGTGTC 59 27812287 27812307 CTTGTGAAAGAAGATTTGCCC 58 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000088223 3 1 3 89 7 135524222 135524241 CATTCGTAAGAGTGACCGTG 59 135522979 135524172 TCTGGGTTCACTCTTTCAGTC 60 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853 3 1 3 90 3 128914905 128919218 GGAAATAGAAAGCGCAGCT 59 128919271 128919290 CTTGTGACTGAAGTCATCGG 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 3 1 2 107 16 85280743 85305258 GGAGGAAACAGGAACTTACAC 59 85280656 85280675 AAATAGCCTGTTTGCCTCAC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 3 2 2 80 1 178759842 178767267 TGTGAACAGGATCCCACAC 60 178767311 178767329 TCTGTACTTGGCAGTTCCG 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 2 2 2 80 7 134619427 134619445 TTGCCGAGTATGTAACGAG 57 134619487 134624162 TAGCCAAATTCATCTCCTCTG 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 3 2 2 83 12 42488722 42488740 CTTACAGTACCTTCCGCAC 58 42486589 42488678 ACTGGGTTATCTTGTCATTCTG 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000011552 2 1 2 80 12 42490059 42490077 ATGGATGTCCAAAGTCGTC 58 42489111 42490015 AAGGCCAAAGTAAATCCGT 57 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 1 1 1 76 2 25235139 25235157 GAGGTATCACCCTTCTGGC 60 25225108 25225127 TCTCCCTTTACTGTTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 1 2 2 80 19 14552762 14552780 TCATCATGGAAGGTGGAGC 60 14552824 14553133 CATCTTCCCGCATCTTGTC 59 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169 3 1 2 80 13 74436043 74436062 GGGCTGTTACTATTCAAGGC 59 74433810 74436001 TTGTCCAAGATGCTACTGTG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000079072 1 1 2 80 1 185863255 185863274 CTGAAGTTCTGGCTGATGTG 59 185863315 185878839 GCTTGGAAGACATTCTTACGA 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 3 2 3 81 20 5109838 5109856 TCACATGCTCTTCATGGTG 58 5108904 5109793 CTTGAAACCGTAGAGCCTG 58 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000089062 3 1 2 80 13 74933867 74933887 TCATGGGAGAGGAAATACTGC 60 74923388 74933826 TCCATCCACAGGTATCTCCT 60 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000045373 3 1 2 80 5 5312638 5316370 TCTACCTCCAGGAGAAAGGT 59 5316412 5316431 GTTCATCACGTTCATCACGT 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000061921 2 1 2 83 6 7017279 7031683 TCTAGATGCCTCCAAGATTCG 60 7031726 7031746 GTTTCTAGTTGCAGGCTTCTG 60 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000077125 2 1 2 80 1 175154504 175171311 TTCTATAGGACAGTGAGCTTACAC 60 175154447 175154466 ATAAACGGCAGACTCTAGGG 59 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 3 2 2 80 10 70515858 70515876 TTTGAGGTGGTAGCACAGG 60 70515534 70515816 TGATTCTGCAAGAACCTTGAC 59 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 3 2 2 80 11 27237364 27237382 AACAGCACTGCCAAATAGC 59 27237425 27250682 TGAGCTCCTTCTTCCTTTCC 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000078559 2 1 2 80 19 60351937 60358397 GCAGGATAATGGGTAAATGCC 60 60358436 60358457 GCCTGTCATCTTCAATCATGAC 60 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 1 2 2 80 10 56228459 56228665 AAGATCAGTGAAGAAGCCCT 59 56228707 56228726 TGGAATAATCTCTGCCACCA 59 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 2 2 2 80 7 2705964 2705982 CATTGAATCAGCTGTTGCC 58 2706024 2706241 TTCTGAAGATTTCCATCTCCC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014118 1 2 4 80 10 65312323 65312344 GTGTCGCTGTGAGAATATTGAG 60 65309840 65312283 TCCGTCATGATCTTCACCTG 60 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014207 1 1 3 189 4 147692044 147692069 CTCCTCCTAGGTTCATGGC 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000091858 2 1 3 80 8 77288631 77288652 CTATGTCTGAACTGCAAGAAGG 59 77288566 77288589 GAAGAGTGTCTTTGCGTGG 59 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 3 2 2 103 7 70479898 70480271 CGGATCAAATGTCGTTCGTC 60 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000080945 1 1 2 80 X 156921390 156921636 CAACTCTCCCATTGAGAAATATGAC 60 156921674 156921692 ACCTTGCCTAGACTGAACC 59 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000019555 2 1 2 84 14 81667701 81667720 GATGAAATCGTGGACCTCAC 59 81662111 81667657 CTTCAACAATCACAACAGAGTC 58 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 1 2 2 80 10 56289070 56289088 CAGTACTCACCCAGAAGCA 59 56288723 56288891 TGTCAGAGTCCTTGGAGGT 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000034991 1 1 3 88 6 10348324 10349065 AGAAGCATGAGAGCAGCTC 60 10349116 10349135 ATAGAAGACCTCCGTCTCCT 59 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843 1 1 2 80 3 2032372 2032390 TTCAGAGGAGGAACAGGAG 58 2030851 2032331 CTAGATTCAGAACTCAGGTCAG 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 2 2 2 81 7 15247727 15248595 AAGGAAGCCTGAGAACTCTG 60 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 2 2 2 80 7 138474243 138476667 AGAACATTGGAGCCATGTC 58 138474181 138474200 CAAGTCCCATGAACACTCTG 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 3 2 2 80 8 21518762 21518782 TCATTCCTAGTCTGACTCCCT 60 21517639 21518720 GCAGTTCCAATTGCTGAGG 60 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 3 1 1 79 10 17375110 17375130 GCAAACATAACACTACCACAC 58 17389945 17389963 CAATAGACTGGCAGCTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000052017 1 2 3 80 4 150681950 150681970 CATGGAATACATTTGACGCCT 59 150674643 150681909 TATGTTCAGCTGGGTGTACC 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000011000 2 1 3 82 6 3743696 3748789 AAATGGAAAGAGTGCTGCAC 60 3743633 3743651 TCCACAGTCTGTAAGACGC 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510,ENSRNOT00000064756 2 2 3 80 12 44087266 44087285 CTGGAATGCAGCCATATGTC 59 44087326 44103308 CGTTAAGAATTCCATCCTCGT 58 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985 2 1 2 80 7 136791553 136852577 CCTCTTCCAAGATTCTCCCA 59 136791492 136791512 TGTTTATTCCTCAGCTTCTGG 58 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 3 2 2 80 8 94069340 94070366 GGTGTATATCTTGCTCTGGGT 59 94069280 94069299 AACTTCCTGATACAACCGGA 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 3 1 2 81 13 73027913 73056642 AAGCAGTACATCCAGTATGAGG 60 72984028 73027874 CATCTGTAACTTCCACAGAAGG 59 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 1 1 2 80 14 77079502 77081913 CGAGGAGGACAAAGAACTG 58 77081957 77081975 ACCCATAGAGGAAGGAGGA 59 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000073296 2 1 2 118 10 55913340 55913358 CAGATGGAGTCAGAGCTGG 60 55913201 55913258 CAACACTTGCTGTGATGGT 59 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006 1 1 2 80 1 263920529 263920547 CATCAATGAACTCTGCCGG 59 263917791 263920485 TAGTCTTCACTGGTGGCTG 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 1 2 3 80 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228638 47228660 TCATATTCTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149 1 1 2 98 10 89479850 89479868 CTGGAGGACTGGTGAAAGG 60 89479930 89482431 CTTCAGAAATGACGGGCTG 59 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 2 1 1 61 3 161297817 161297835 TGGTCCAACTGGAGTATGG 59 161296509 161296527 CCTCTGGATCACAAGACGG 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 85 9 44568672 44570706 CCAGATAAAGTATTTCAGCCTAGAC 59 44570746 44570767 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627 2 1 2 80 3 120675778 120723878 GGCTTTGCTAATGAAGTTGC 58 120723917 120723939 GGAATATTGAAGGCAGAGATCAC 59 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 1 3 3 80 8 22427974 22427993 TCCTTGACCATCCATCTGAC 59 22428034 22429338 GTTGACTGATAGCGTTTCTCC 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 1 2 3 80 9 100574812 100575899 TGCCAAAGGTTCACATTGAG 59 100574751 100574771 GGGCTACATTCACATCTTCTG 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000091885 2 1 3 81 7 61179486 61179505 CAGAGCAAAGAGAAGATGCT 58 61179546 61179569 CAGAATGAGATCGAGTTCTTGG 59 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000042227 3 1 2 133 9 45205608 45206412 CGTGTCTATGAACCAGATAGGA 59 45204260 45205516 CCCTTGTTAGTCTTGTAGGGT 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 3 2 4 168 1 201226086 201238798 ACATCTGACAGTCCAGAGC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185 1 1 3 80 8 78421174 78421197 GAACACCATACTACTCATTCTCTG 59 78415911 78421140 CTTGTAAAGGATCTAGAGCTACAG 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445 3 1 2 80 X 159190140 159190160 ATCTAGAAGCACCTCTTCAGG 59 159189326 159190099 CCATTTCTGGGTTCTGAGGT 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000080339 1 1 5 80 1 215680136 215680157 ATACCTTGTACCAACTGGAGAC 60 215680192 215681274 GGACAGTCATGATATCGTATTTCTG 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339 2 2 5 82 1 215671968 215673197 AAGAAGTCCAGGAGGAAGC 59 215676246 215678560 GATCTTAGGAGCAGTAAGTTTGG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728 2 1 2 80 3 57957253 57957272 GTACAATGATCCGAACAGCA 58 57946315 57957210 GAGATCAACCCATCCTTGG 58 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742 2 1 2 80 7 137142260 137142280 CAGATGATGACTAGGAACGTC 58 137142321 137185972 AGGAACATCACCAATGTCTC 58 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 3 2 4 83 3 152600423 152600441 CAGGAAAGATGCACAGACC 59 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948 1 1 5 84 7 80555210 80721373 CTATACCATTGATACTGGCCA 57 80721417 80721437 AATAGTTCCCTTAGGCTTCTG 57 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000067975 1 1 4 82 12 48167554 48168612 CTGATCCAGAGGCAAGAGG 60 48167351 48167371 TCCACGTTCAGATATCTCCTC 59 NA Rattus norvegicus 81 Mgst3 ENSRNOG00000004245 ENSRNOT00000005719 1 1 1 80 13 85606393 85606412 GTCATGTACAGCACAGATCC 59 85604627 85606352 GTACACCTCCAATGTGTTCTG 59 NA Rattus norvegicus 81 AABR07052831.1 ENSRNOG00000046674 ENSRNOT00000071319 1 1 1 80 3 77799794 77799813 GCAGAAGTGATTGTCCTGTC 59 77791812 77799756 GATGGAAGAATAGTAGTGAAGTGG 59 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 2 2 2 80 19 24853413 24853431 TGTATGATGTTCAGCGCCA 60 24853473 24853869 AAACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 Zzef1 ENSRNOG00000024535 ENSRNOT00000036278 1 1 1 80 10 59398210 59400157 ACATCAGTCAGCTCTATGTCC 59 59400199 59400217 CCCTCAGACCATGAATCCT 59 NA Rattus norvegicus 81 Zdhhc2 ENSRNOG00000022686 ENSRNOT00000036092 1 1 1 84 16 54976525 55001983 TGTGCATAGTGTCCATGGA 59 54975309 54975327 GACCAGACAAACATTGCGA 59 NA Rattus norvegicus 81 Celsr2 ENSRNOG00000020058 ENSRNOT00000027263 2 1 1 80 2 211185866 211185886 AATGGAGATGCTCTAACTCGG 60 211185711 211185825 CTTGAGGATGCCTTTGTGAG 59 NA Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 2 2 2 80 8 59298350 59299801 TCACTTTGTTTCCAGTTCATCC 59 59298291 59298312 TCAAAGAAGGTGTGAATACAGG 58 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 1 1 1 80 1 169973074 169973093 CCATGTACTATCTGCTTGCC 59 169971950 169973031 AGATAAGCAGGACCTTGGG 59 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 2 1 1 81 1 169973073 169973092 CATGTACTATCTGCTTGCCA 58 169971948 169973030 GAAGATAAGCAGGACCTTGG 58 NA Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 1 2 2 80 X 20227712 20227732 TTAAGACGGCCAAAGAAACTG 59 20227460 20227673 CATCATTAGTAGCTGTCACCTC 59 NA Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 2 1 1 97 8 55623430 55623448 ATACCAGTGTTGGGACAGC 60 55624463 55624481 CATGTCAAGGCAGGAAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 2 2 3 82 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952706 87953550 CAGTCTGGTACTTGGTCCT 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000083915 3 1 5 98 9 28667073 28732719 GCGATCGAACAATGAAAGGT 59 28664182 28664200 CTTCCAAAGAACCACGCTC 59 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 2 1 3 80 10 59556436 59556454 TCAGATGTCTCTGCCTGTC 59 59556497 59556905 GTCTCAAGAACACCATCCAC 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 1 3 3 119 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146 2 1 2 99 7 83386864 83386882 CTGAGCTCAAATGGAAGGA 57 83389768 83396202 CTGGGAAACTCAAATCATCAG 57 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 3 2 2 80 16 61765482 61768143 CCAATATACAACCAATACTGGCC 60 61768182 61768201 TCTTCTGGCTATGCAGTACG 60 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000082356 3 1 2 154 8 128577500 128585821 CGGGTTTCCTATGTAATTCGAG 59 128585935 128587752 TATGGATCTTGCTTGTGCTG 58 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 2 2 2 80 19 25247895 25247999 TAGAAAGGAAGATCCTGGCC 59 25247834 25247853 GTACTACGTCCTGGTACTGC 60 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 2 2 2 81 3 147109080 147109099 GCAGAAGGAGGTTTGTATCC 58 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754 2 1 5 82 10 89177764 89179530 GGAGGAAGAGTTCCATGGG 60 89179575 89179594 TAATCTCAGCCTTGTGCTCC 60 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 1 2 2 80 3 35791328 35791348 ACTGAACATGACATGACTGTC 58 35784857 35791289 AGCACCATTAATGAACTTCTCC 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979 1 1 3 80 20 5162791 5162916 ATCAACAAGCACTTCCTCGA 60 5162730 5162748 CTCACTCTTGAAGGCCTCC 60 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 1 2 2 80 12 51870028 51876561 ATGGATTCTCGAATCTAGACTG 57 51869969 51869989 GTCCATCGAAGCAATATTCAC 58 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 3 2 2 80 1 71690145 71690580 ACCCTTAAAGTACTCGTGGTC 60 71690085 71690105 ACGTTGGTTCTGAATCAACTC 59 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000000824 3 1 2 83 12 50288802 50292759 TTGAGGAGGTGTACCACAG 59 50288737 50288755 TAGTCTCATCTCTGGGCAG 58 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 2 2 2 80 8 61703044 61703062 CATTGTGAAGCTGAAGCCT 59 61703104 61703647 TCTCGAACATTCAAGATGGTG 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 3 2 3 94 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390864 154391142 ATGATGCCATCATACTTCTGC 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 2 2 2 138 1 80606779 80609217 TGATCAAGACTCGGAACTGG 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392 2 1 2 80 8 52158192 52168552 TACCATCATCACAGACACCA 59 52175836 52175854 AGTTCTTCTGCGGAATTGG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172 2 1 2 104 1 193200985 193201003 GAATACCTAAGGCGACGCT 60 193201071 193202400 TGCATACATGTCCACCGAG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 2 2 7 80 16 64036978 64043376 GCTTCTACAAGCATCTTGGG 59 64048171 64048190 AGATGCCAGTAATTGTCAGC 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 1 2 7 80 16 64036976 64043375 CAGCTTCTACAAGCATCTTGG 59 64048169 64048188 ATGCCAGTAATTGTCAGCAC 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014147,ENSRNOT00000038549 1 2 7 104 16 64025208 64025226 TGAAGGACCTGTCAAACCC 60 64036977 64048151 CCTCCGCTTTGTAGAAGCT 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200 1 1 2 84 5 75144819 75146024 GTGAACCACCATCTACGTG 58 75144751 75144770 CAATCGTAGTCTGTCCAAGG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000066167 2 1 2 80 20 50440117 50444186 TCTATAGGATGTACCCTCTACG 58 50444232 50444250 CAAGAACACCGAGTTCCAG 59 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 2 1 1 92 14 3064746 3064767 GAAGTCAGACATGAAGAAACAC 58 3067157 3067175 TTGGAGCTCTGACTGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000080174 1 1 5 90 20 4806712 4806730 ATGACATGCCAGAGGACTC 59 4806536 4806555 TGACACAAATGTGAGGCCA 60 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000080174 1 2 5 80 20 4810664 4810684 GTCATGATGTTCAGTGCTACC 59 4808323 4810625 GAAGATCTCCATAGGATCTTGC 58 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980 1 1 2 80 14 83897137 83900081 GTTGATAATGCAAGAGATGCTG 58 83907864 83907884 CATAAATCCTCCTCGAAGGTC 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 3 2 2 80 1 213520407 213520425 TTGTCCCTTCCAACCTACC 59 213520469 213520984 TCACAACTGTACCCTTGGG 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073 2 1 2 80 10 96213893 96213914 CATATGGAAAGTCTGTGGACTG 59 96204363 96213853 GGTGTTTGGTCATAAGCTGC 60 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551 1 1 3 80 12 47185984 47203596 CTTCGGTCAGGATAGATCGT 59 47204372 47204393 TCTTTGTCCTTGTCAAATTCCC 59 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144 2 1 2 80 14 82277225 82279001 TACGTCACTGTACTCAAGACTG 60 82277166 82277185 AAAGGTGACATTGTGCAAGG 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000001160 1 1 2 80 20 5002728 5002746 GTCATTTACCGCAGTACCC 58 5002788 5002918 TTTCTTATCCACCTCGATGTC 58 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 2 2 2 80 7 98194921 98194939 AGTAAAGGACCAAAGGCTC 57 98189984 98194879 ATGTGGTAAACCTGGATAAGG 58 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 1 2 2 80 8 23143848 23143866 AACTTGAGGCCATTGTTGG 59 23143284 23143805 ATCCTGAAGATACTGCAGGT 58 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 1 2 2 80 14 86146443 86146640 AATTCAAGGAAGCCTTCAGC 59 86146382 86146402 GGGAATAAGTCTCCTTCAGGT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 2 1 4 80 8 39197768 39197786 CCAGACATAGGGATGCCTG 60 39197617 39197727 AATGCCATGAAGATAAACCACC 59 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 2 2 2 80 5 154312111 154312230 CATTCGTGGAGAAGACTCCA 60 154312271 154312291 ATCTCCTCAAACTCCACAGAG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 2 6 8 92 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365885 4365903 ATTCTCTGGCATTTCCGCT 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452 3 1 2 84 2 44339294 44339313 ACGACTCTAATTGGAGGAGG 59 44337785 44339247 GAGTCAATCGGCTGTTTGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 1 5 8 80 20 4389081 4389099 GTCTGTCATGGATGAGCAC 58 4388931 4389038 TAGTCCGTGTCTCCATACTG 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 3 1 1 73 1 220323975 220323994 GGTTTCAATCGAATCAGCCA 59 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000048318 1 1 2 82 8 61813791 61813810 GTTCTCATGGCAATACGCTG 60 61813854 61813875 TTGATAATGGAGGCCCTTGG 60 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625 2 1 3 125 8 127190683 127190701 TTTGCTTTGGATCCCTCCA 59 127195019 127198421 TGTGTCACCTGACTGAGAC 59 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 1 2 2 80 2 218967498 218967517 TAATGGTAGACGATGACGTG 57 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 3 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 1 2 2 81 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452302 21452322 CCCATTTGACATATCTGACCA 58 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000048764 2 1 2 85 8 118174104 118183375 CTCTCGAGCTTCTAGGGAC 59 118174037 118174055 AGATGCCAAGAGCTCTTCC 60 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 2 2 2 80 8 62407322 62407341 GGTGGACTATCTTCGATCAC 58 62407161 62407279 GCTTCACAGACGTCTAGTG 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 2 3 3 80 20 48563761 48564813 GATTGTACAGTGGGACATTCG 59 48564854 48564873 AAGACAATCGTGTTGACAGC 59 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 3 2 2 80 5 79398800 79400910 AGTGTGATACAGCTCTGGT 58 79400951 79400972 CTTCATTTCTTGGACATGATCG 58 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353 2 1 2 91 3 80411694 80414303 AAGAAAGAGGGTGGACCTG 59 80414358 80414376 CATTCAGCATCATGCCCAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659 2 1 2 82 16 67522475 67522494 ATTGGTGTCACCCTCTACAG 59 67522536 67527006 AGAGAATTTCCTGTCAATGCAG 59 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566 2 1 2 87 5 61704744 61704763 TAAGAGCAGGAGTCTGTGTC 59 61704272 61704696 CAGTGGGTCTGACAAATACAC 59 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010440 3 1 2 124 5 128648122 128652059 CTGAGAAACAGTCTGCAGC 59 128653202 128653223 ATCTGGGTATTTCAAACTACCC 58 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680 3 1 2 105 5 164690290 164691764 CAATGATCAGGTTCAGCGTC 59 164690204 164690222 AACCATGGAGACCATGAGC 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000078851 1 1 2 195 5 156088635 156088654 TGGTTACTGCTGATCACCC 59 156087438 156087934 TTGTTGTGAGCATAATCCACC 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000078851 2 1 2 195 5 156088636 156088655 GTGGTTACTGCTGATCACC 58 156087439 156087934 TGTTGTGAGCATAATCCACC 58 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 3 3 3 80 5 59630462 59630480 GTCTGTTACATCCAGCTGC 59 59624444 59630418 CTGTTCCTTGATGGAGCTG 58 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615 3 1 2 80 5 101023612 101023631 TTGTGACCGTATTCTCCAGG 60 101020639 101023571 TCTTCAAGCCTATCCAGAAGG 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 1 2 2 91 3 162414187 162422792 CAATGAAATTGAGCGCGTG 59 162422847 162422865 CATATCTGGATGCGAACGT 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067435 2 1 3 80 5 100439798 100454039 TTACTTGGCAAAGTCCTGGT 60 100439737 100439755 CATTTGCCGGTAAGATGGG 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000012739 2 1 2 81 3 153582303 153582322 TGACTATGAGTCACGGACAG 59 153582364 153586779 GTCTCCCTCTGTGTTATTGAC 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000084299 3 1 2 85 3 66836048 66836066 CGATGTCCCTGATACTCCA 58 66835979 66835999 CTCCATAAGCATGGTCCAC 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 3 3 3 92 16 69877426 69877444 GCCGGAGACTGGTATTACC 60 69875930 69877370 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803 3 1 2 109 3 64338566 64362754 CCGAACTTTAACACAATGGAC 58 64338477 64338497 AGCTGACAGACATTACAAGAG 58 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192 1 1 2 101 16 81105517 81113898 TTAGTCCTGGGAAAGGTGTG 59 81113962 81113980 CATTGGACTGTCCGAAGGT 60 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000090674 3 1 2 127 16 81493514 81494835 GACAGTACCTGGACCAGAG 59 81494923 81496130 AAGCTTCATACAGTTTGTCCAG 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000057845 1 1 2 89 16 79889113 79895105 GGTCAGATGTAGAGACAGCC 60 79889043 79889061 TTTCGTCTTCCACTTGCAC 59 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000089265 2 1 2 88 16 74887642 74887660 CAGACGAGAAAGATCCTCC 57 74887711 74906122 AGATAAGATCTGGGACCTCC 58 NA Rattus norvegicus 81 AY172581.18 ENSRNOG00000032609 ENSRNOT00000048525 2 1 1 60 MT 5129 5147 TGAAGCCAGTAAGTAGGGT 58 5087 5106 TGGAAGGATTCAAACCTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049386.1 ENSRNOG00000054001 ENSRNOT00000080806 3 1 1 60 5 120176302 120176321 TTATCACAGTGCTGATGCTG 58 120176261 120176281 GCCATCCTTCAGTATTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058175 ENSRNOT00000086840 1 1 1 60 2 102009635 102009653 AGAGACTTTGACAGCCCAG 59 102009593 102009613 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059307 ENSRNOT00000084167 3 1 1 61 2 145884821 145884842 CATGTTCATCAATGAGTGACAG 58 145884781 145884801 TCATTCAGATGTTCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056329 ENSRNOT00000081950 1 1 1 64 2 131621068 131621086 TGAGGTTACATTGTTCGCA 57 131621022 131621040 AATGGATGATCCTCAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011090.1 ENSRNOG00000056030 ENSRNOT00000087814 1 1 1 60 2 157724043 157724065 CTTACAAATGCTGGGATTACAGG 60 157724005 157724023 ATGTCCATGTGCTCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055522 ENSRNOT00000090306 1 1 1 60 8 26732749 26732769 ATGTGGATCAGTAGGTGACAG 59 26732709 26732732 TAGGTAAGAACACTGAGCATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000061688 ENSRNOT00000088935 3 1 1 60 8 13868559 13868577 TTGAGGTCTATCCCGATGG 58 13868599 13868619 TATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058395 ENSRNOT00000081859 2 1 1 60 16 71209010 71209028 CAGTGGTGTCCTGGTAGAG 59 71208968 71208986 TCCCTAGGATCCCTTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 1 1 1 66 2 197784293 197784311 ATCTCTGTGAGTTCGAGGC 59 197784341 197784359 CTCTGTGTATTGCTGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059647 ENSRNOT00000084679 2 1 1 60 11 56105880 56105901 GAAGGATACGGCAGATATTAGC 59 56105919 56105940 GCTTCCTGAATTTGCAAATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056882 ENSRNOT00000079314 3 1 1 61 5 139827987 139828006 TGGAACAGAGACGATTAGCA 59 139828028 139828048 CGAATGCTTCACAAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057119 ENSRNOT00000090670 2 1 1 60 8 68024849 68024871 GGAACGATACAGAGAAGATTAGC 59 68024891 68024909 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057521 ENSRNOT00000080149 3 1 1 60 8 62185768 62185789 CAACCAAATTTAGCCATCACAG 59 62185729 62185748 ACATGAACAGTGAAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 2 1 1 61 5 59494930 59494951 TGTGGGAAAGAAACTGTTACAC 59 59494968 59494991 CCCATATTCCTCTTTCTATGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000056088 ENSRNOT00000080344 2 1 1 63 11 68058505 68058525 CCAATTGTCACTAGATCTCCC 58 68058550 68058568 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059045 ENSRNOT00000078184 2 1 1 60 8 104069841 104069860 CTTCATCTCCAACTGCATGC 60 104069800 104069818 ACTGTGATAACCTGGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 1 1 1 60 8 23323385 23323406 CCTCCTTGGTAATGTATGTAGC 58 23323346 23323364 GTTTCCAAGGTCCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044386 ENSRNOT00000069653 3 1 1 60 16 50847069 50847090 AACCAGATCTGGTCTGATATCG 60 50847030 50847050 TTCTTCCCTCTAAGCACTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058928 ENSRNOT00000087365 2 1 1 60 16 49365957 49365975 GAAAGCAATCAGGCTTTGG 58 49365915 49365933 ACATCAGCTGAGTCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060696 ENSRNOT00000077724 1 1 1 60 16 81030664 81030688 CAGACTAAATTAGAAGGACACAGAG 59 81030628 81030646 AATTTGCACCCTATCCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052158 ENSRNOT00000089307 1 1 1 60 8 122040912 122040930 GTACATCAGGAGGTGGCAG 60 122040870 122040890 GTCATAGGTCTGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061762 ENSRNOT00000090049 2 1 1 60 8 117213340 117213364 GCTGACTAGATTCCTTTCTTTATGG 60 117213304 117213324 AGCTACTTATGTTTGCCACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049473 ENSRNOT00000073795 3 1 1 60 2 230213364 230213385 GATCTTAGAAGCTAAGCAGGGT 60 230213405 230213424 GTAACCTCAGTTCTCCCGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000058708 ENSRNOT00000078805 1 1 1 60 16 24545284 24545302 CACATGTGTCACTAGGTGG 58 24545326 24545344 AGGTCAGAACACTGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055540 ENSRNOT00000084161 3 1 1 60 16 49355152 49355174 GCTAAACTTGGAACGATACAGAG 60 49355192 49355212 ATTTACGTGTCATCCTTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056975 ENSRNOT00000081177 2 1 1 60 X 21026074 21026094 AATAGAGGAGGTTTGGTCCAG 59 21026112 21026134 GTGGATGTTCTAGTAGGAGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071482.1 ENSRNOG00000031483 ENSRNOT00000043247 2 1 1 60 8 118378093 118378111 ACCACCTTAAAGCGGACTC 60 118378135 118378153 TTGGATTTGGTCGCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058633 ENSRNOT00000086110 1 1 1 60 2 176084984 176085002 GAGAAGATTAGCATGGCCC 58 176084942 176084960 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061649 ENSRNOT00000086337 3 1 1 81 1 121563651 121563671 GGGTCTATGTCGATGATAGCA 59 121563711 121563732 CCTCAGCGTAATACTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000059106 ENSRNOT00000080307 3 1 1 60 6 133770713 133770731 ATGATGACAAGGTTTCGGG 58 133770751 133770773 CTCAGACTGCTAGAGATGTAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071598.1 ENSRNOG00000054937 ENSRNOT00000090467 1 1 1 125 8 123829005 123829024 ACACAGACACATACAGACAC 58 123828899 123828918 TGTGTCTGTATGTGTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062766.1 ENSRNOG00000051824 ENSRNOT00000085861 2 1 1 81 6 7035994 7036014 TCAGTGAGCAACTAGGAGTC 59 7036058 7036076 AAGGATGCCTTGCAAAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055269 ENSRNOT00000089917 1 1 1 61 X 105325837 105325855 AATACCGAGAAGAGTGGCA 58 105325880 105325898 AGCCCACTTCACAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054342 ENSRNOT00000091987 1 1 1 60 9 78980066 78980084 GCTGTAGTGTGCTATGCTG 59 78980024 78980044 GAGGTCACCATATTAATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 1 1 1 63 2 192520892 192520910 TACCAGCAGAAATGCCCTC 60 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060809 ENSRNOT00000077795 3 1 1 60 9 23658602 23658624 TCAGTCAAGGGTATATGAGTAGC 59 23658564 23658583 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA2 ENSRNOG00000054098 ENSRNOT00000090605 2 1 1 60 X 87163075 87163096 TATGTGGACCAATAAGCAAGTG 59 87163117 87163135 AAGTGCTAATGTGGATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054985 ENSRNOT00000080886 1 1 1 60 6 69084479 69084498 TGCTATGTCATGTATGGGTC 57 69084518 69084539 GCTGAGTGAAGAAATAGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060380 ENSRNOT00000081429 1 1 1 60 9 104363987 104364007 CACTGAGATCCAGATCTTGAG 58 104364029 104364047 TTCACGCCAAGATTCAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052875 ENSRNOT00000082399 2 1 1 60 9 65051145 65051163 TCCTCAGTAAGTGGCAGAG 58 65051103 65051121 TTCACAGGTCAGAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000057513 ENSRNOT00000086739 2 1 1 60 6 66235355 66235373 GCTTCAACTTTGCGTCTCC 60 66235393 66235415 CTCAGTCATCATCTACAGGACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054731 ENSRNOT00000089092 3 1 1 60 6 29114594 29114614 CATTAAACTGGGACAGCACAG 60 29114554 29114573 TCATGAAGTTGCGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059999 ENSRNOT00000078954 3 1 1 60 X 20520605 20520623 GACACCACAGTCAAGAAGG 58 20520646 20520665 ATATACCGAGTGCGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061036.1 ENSRNOG00000053228 ENSRNOT00000090283 1 1 1 80 4 103024462 103024807 TTTGGATTCCAGCTTCCAG 58 103024400 103024419 AAGCTTGATCTCCAAGTGTG 58 Novel Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 3 1 1 69 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711755 86711774 TAAACACCTTCCAGCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018218.1 ENSRNOG00000060554 ENSRNOT00000083932 1 1 1 106 15 47340838 47340857 AAAGAGGTCATCAGGAGGTG 59 47340926 47340946 AGACATCCTGAACCCTTGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057593 ENSRNOT00000090992 2 1 1 60 X 112166146 112166164 ACATCAGTAGGCAGCAGAG 59 112166104 112166122 TGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054241 ENSRNOT00000079402 2 1 1 60 X 133363725 133363743 TCGGTCAAGGGTATACGAG 58 133363683 133363702 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000053998 ENSRNOT00000090733 2 1 1 61 X 63668874 63668892 AACTGACTCCTCTGTTTGC 58 63668831 63668849 GTGCTTCTTATCACAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052900 ENSRNOT00000082512 2 1 1 68 16 87696667 87696688 TGTAGCTATTGTGACACATGTG 59 87696620 87696640 AGACCGAACATAGACATAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053976 ENSRNOT00000091887 1 1 1 60 15 11045036 11045057 ACATCAATAGGTGACAGAAAGG 58 11045078 11045096 TTCATGGGTTGGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059048 ENSRNOT00000079127 2 1 1 60 10 74989646 74989664 CAGAGATTAGCATGGCCTC 58 74989604 74989622 AAACATGGAACACATCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 1 1 1 208 9 110721471 110721489 TAGTGTGGAGGTCAGAGGA 59 110731672 110731690 CTTGTTGCCTTTGTCCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057777 ENSRNOT00000090516 3 1 1 60 7 45060777 45060797 TCACAGTTGAATCAGAAGGAG 58 45060818 45060837 TCACAGGTGAGAACACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052125.1 ENSRNOG00000047241 ENSRNOT00000072489 2 1 1 80 3 38017414 38017436 AACACATGACAACCCTGGA 59 38017477 38017498 CTTGTATTCTGTTGGTGAAGCT 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000058149 ENSRNOT00000090194 2 1 1 60 6 117111707 117111726 CTCCAGATATGCTGAACCCT 59 117111749 117111767 GTGTGAACACAGTCCTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055884 ENSRNOT00000088014 1 1 1 60 7 119070258 119070279 GAAACGATACAGATTAGCTTGG 57 119070219 119070237 TGGAACTCAATGCATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041705 ENSRNOT00000063458 1 1 1 60 7 67029051 67029069 TTAGCAGCTAAGCAGGGTC 60 67029009 67029027 TATCCTGTTTGGCGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057232 ENSRNOT00000088949 2 1 1 60 10 65227698 65227717 TGGATGAGTAGGTGACAGAG 58 65227739 65227758 TCATAGGACAGAACACTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061599 ENSRNOT00000081769 1 1 1 60 12 38675059 38675080 CTCCCAAATGCAAGAAATTCAG 59 38675020 38675038 GAGCATGAACACAGTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063281.1 ENSRNOG00000054165 ENSRNOT00000084242 3 1 1 80 6 26444033 26444051 GATCAGCCATCCAGAGGAG 59 26439817 26441481 TAGATGGGACAGTGAGTCCT 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059533 ENSRNOT00000078169 2 1 1 60 8 117815367 117815388 GACCTAGGAGTTGGAATAGGAG 59 117815328 117815348 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053403 ENSRNOT00000088789 1 1 1 60 8 115912478 115912496 CTGTCCCTAGAAGCTTGCA 59 115912520 115912538 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 2 1 1 60 1 189345546 189345565 TAGATGACTGGACAGGAGAG 58 189345505 189345524 TTTCTAAGCTCTGGTGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056770 ENSRNOT00000083475 1 1 1 61 1 87931424 87931442 TACAGAGCTTGCCAGAACC 60 87931381 87931399 TGCCTTGGATGAAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057950 ENSRNOT00000078409 1 1 1 60 1 152004312 152004331 GCATATGCATCAGTAGGTGG 59 152004351 152004372 GGTTAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031767.1 ENSRNOG00000053112 ENSRNOT00000088278 2 1 1 103 18 33444375 33444398 GTGCAAAGGATCTGTTCTATAAGG 60 33444461 33444479 TGAGTCGAAGAAGTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA47 ENSRNOG00000044194 ENSRNOT00000069461 3 1 1 60 2 25046228 25046246 TGGAGCAGTTCATACCGTG 60 25046269 25046288 GCTAGCCCTTTACTGTTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056646 ENSRNOT00000090634 1 1 1 60 2 26671213 26671234 GCTTGACACAGAGAAGATTAGC 60 26671174 26671192 GCTTGTTCAATTGGCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.3 ENSRNOG00000057463 ENSRNOT00000071415 1 1 1 80 2 52156636 52156656 AGAATGCAGATCCCATGCT 59 52156700 52156718 TGTGTCTGCTTTGATGTGG 58 Novel Rattus norvegicus 81 AABR07027731.1 ENSRNOG00000049396 ENSRNOT00000072988 3 1 1 60 17 42825637 42825657 TAGTTCAGCTGTTCGATCCTC 60 42825597 42825617 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068355.1 ENSRNOG00000051904 ENSRNOT00000082949 1 1 1 94 9 101005211 101005229 CTTAGCCCTGATGACTCCC 59 101005394 101005412 TCCAGTACACTCAGAACGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC103090.1 ENSRNOG00000053437 ENSRNOT00000084200 2 1 1 60 10 13780198 13780216 CAACTTTGCTGCTCATTCC 58 13780156 13780174 GAAAGCCAACAGGGTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 1 1 1 60 15 24285152 24285173 GCCATACCTAACTGATGATCAC 59 24285192 24285212 AATCCAATGGGTAAGTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 3 2 4 80 3 140310628 140310646 TCAACTCATGGACTCCCAG 59 140310689 140316290 ATCATTAAAGCAGTGGTCGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055244 ENSRNOT00000077247 1 1 1 60 3 118986634 118986652 GAGAAGATTAGCATGGCCC 58 118986674 118986694 CCTATCTAGTGTCTGTCAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141152.1 ENSRNOG00000046520 ENSRNOT00000070924 2 1 1 60 4 9903119 9903139 CCTTGAACTCAGAGATTCTCC 58 9903159 9903179 TGGTACAGCCTTTAATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051565 ENSRNOT00000081252 1 1 1 60 4 75730946 75730967 GGCTAATTATGCTTCCATAGTG 57 75730987 75731006 GGTTACCACATGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094298.1 ENSRNOG00000026046 ENSRNOT00000038157 2 1 1 60 14 71710630 71710648 GAGACCAAAGTGAGCAGAG 58 71710588 71710608 AGTTATAGCCCTCAACAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit1lb ENSRNOG00000036603 ENSRNOT00000076802 3 1 1 81 1 252916827 252922404 ACCATGAGTGAAGAATCTCG 58 252916765 252916786 TAACCAACTCCCAAGTAAAGTG 58 Novel Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 2 1 1 60 9 52938082 52938100 AGGCAGCTCCATATTCGTC 60 52938121 52938142 ATAACCAAAGAGCAATGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054234 ENSRNOT00000085855 2 1 1 69 4 101750153 101750173 CTACCACCTACAGGTATAGCA 58 101750104 101750122 TTCTGTGCCACCTACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053947 ENSRNOT00000082728 1 1 1 60 9 85305499 85305518 GTGTCTCATGAGCATCAGAG 58 85305458 85305482 CCTATATCAGAACACTGATATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054501 ENSRNOT00000083019 1 1 1 64 6 52306142 52306160 AAAGAAGCTTAGCACTCCC 58 52306096 52306114 CATGTGGGTGTTGTTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 1 1 1 80 13 51937099 51939266 CATGTTGGGCGATTCTCAG 59 51939311 51939329 GCATATGTCCTCCTCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053888 ENSRNOT00000090107 2 1 1 60 1 11970126 11970144 GATGAAGAACGCAGCTAGC 59 11970166 11970186 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071848.1 ENSRNOG00000060610 ENSRNOT00000078193 3 1 1 60 1 12952688 12952711 CTTACGGAGGTCTTAATTTATGGC 60 12952651 12952669 GAAGCATCCATTTAGCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0645.2 ENSRNOG00000051275 ENSRNOT00000076719 2 1 1 60 X 63537996 63538018 GCTTAGGTAGCAAAGCATAAGTC 60 63537958 63537980 CATAAAGCTCAACACCCATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055463 ENSRNOT00000077310 1 1 1 61 17 16386271 16386289 TCACATGTGCGTCAGTAGG 60 16386312 16386332 GTCAGAGCATGGAACATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055463 ENSRNOT00000077310 2 1 1 65 17 16386261 16386279 GACTGCTGTGTCACATGTG 59 16386304 16386326 GCATGGAACATAGACATAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055824 ENSRNOT00000091726 1 1 1 64 1 62062210 62062229 AGAGAAGATTAACATGGCCC 57 62062165 62062184 AAACACATGGAATGCTTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059236 ENSRNOT00000085489 1 1 1 60 X 73798459 73798477 ATACTCACTTTGGCAGCAC 58 73798417 73798436 GGCCATGGTAATCTTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054598 ENSRNOT00000087639 3 1 1 60 2 260837372 260837391 CTAAAGCTGAGCTCTCAGTG 58 260837331 260837350 ACAGGTCCTCCTCTATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000056164 ENSRNOT00000079132 3 1 1 61 3 150417897 150417915 TTGTGGTTGTTCCAACTGC 59 150417940 150417958 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051851 ENSRNOT00000083882 2 1 1 60 12 38654192 38654212 CCCAAATGCAAGAAATTCAGC 59 38654152 38654171 AAGAGCATGAACACAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056813 ENSRNOT00000092228 3 1 1 60 3 136819821 136819839 GTCCTTAGAGGCTTTGCAG 58 136819861 136819881 TCTCTACTACCTACTGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122603.2 ENSRNOG00000059288 ENSRNOT00000078628 3 1 1 131 16 20052151 20052169 TTTGGCTTTGAAGGCACAG 59 20052037 20052056 CTTTGTGTCTCAGGTGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA74 ENSRNOG00000058587 ENSRNOT00000091686 1 1 1 60 3 142141689 142141707 GGTTTCCTTGTACCTAGGC 58 142141731 142141749 CAACTTGCTATTGGCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564534 ENSRNOG00000032038 ENSRNOT00000043280 1 1 1 91 X 63054173 63054191 TAAGTGCCCTGGATTCTGC 60 63054245 63056315 ATACTCCAAGGGCAAGAGAC 59 Novel Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 2 1 1 98 5 160826743 160826763 ATAAGCCTGCTTGTCTTGC 59 160826830 160826848 TTTCCCATCAGAGACCGTG 59 Novel Rattus norvegicus 81 AABR07006105.1 ENSRNOG00000052685 ENSRNOT00000080189 2 1 1 60 1 220354346 220354365 GGTGGCTTTGAGTGTTACTG 59 220354385 220354406 TACAACTGATACCATCTGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000070995 3 1 3 81 6 104526262 104526282 AAAGACACTGCAGATTCAGAG 58 104526322 104528744 GTGGGATATCATCTGTGTACTC 58 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 2 1 1 66 16 19954765 19954787 TAGCTCATTTCCTGGTATGAC 57 19954815 19954833 TGTAGGCCATGAGATCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059789 ENSRNOT00000082557 1 1 1 60 12 7115999 7116017 GGAGTTCTGGGCTGTAGTG 60 7115957 7115977 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004539.1 ENSRNOG00000056733 ENSRNOT00000086862 2 1 1 81 1 147270597 147270618 CAGAGACAACTAGTACAACCCT 59 147262624 147270555 TCTTCCTGGACTTTGGCTG 60 Novel Rattus norvegicus 81 AABR07029842.1 ENSRNOG00000050824 ENSRNOT00000070824 1 1 1 60 10 54769672 54769692 ACTCATGTAGATCCAGTTCCA 58 54769714 54769732 CCCTTACTGAAGAGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057878 ENSRNOT00000080539 3 1 1 60 12 2299875 2299895 AGACTCGTCTTAAGTCAAGGG 59 2299835 2299854 TGTTTAGAGGCTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057603 ENSRNOT00000090692 2 1 1 60 1 82084759 82084778 GAGAAGATTAGCATGGCCTC 58 82084801 82084819 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052747 ENSRNOT00000091868 3 1 1 60 4 106621990 106622010 TAGAGTCACTCCAGTTGTGAC 59 106622031 106622050 CTAAATCTGTGCCACCTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000057762 ENSRNOT00000077873 1 1 1 60 1 185329791 185329810 TGATGGTGTTCCAACATTCG 59 185329833 185329851 GAAGGTCTACCCAACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051966 ENSRNOT00000088761 1 1 1 72 12 46862483 46862501 ATGAGGTTTATCCGAGGCG 60 46862429 46862447 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036167.1 ENSRNOG00000045927 ENSRNOT00000074199 3 1 1 60 12 35318519 35318538 GTCCATTCTCAAGCTCACTG 59 35318478 35318497 TCCCTATGACCATATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118794.1 ENSRNOG00000059865 ENSRNOT00000079215 1 1 1 80 16 2461191 2461211 CCTTCACTGGAGAAATATGGA 57 2461252 2469952 AAGGTCATACCAATGTCCAC 58 Novel Rattus norvegicus 81 AABR07011708.1 ENSRNOG00000048557 ENSRNOT00000071263 2 1 1 70 2 166850505 166850523 GAGATCCAGCTGTAAGGCA 59 166850556 166850575 GGATGTTACTACCCACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130862.3 ENSRNOG00000056968 ENSRNOT00000080692 2 1 1 84 X 105563549 105563567 CATCTCCACTACGTGGTCC 60 105563482 105563501 ATACCCATCCAAGCGTTCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000056952 ENSRNOT00000091329 2 1 1 60 3 148628948 148628969 AATACAGAGATTAGAATGGCCC 58 148628988 148629008 ATGGAATGCTTCACCAATTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000056978 ENSRNOT00000087390 1 1 1 66 12 40881468 40881486 ATAGTGTCCCGTGCTAGAG 58 40881420 40881438 CAGGAGCCTACAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059915 ENSRNOT00000084224 1 1 1 60 14 11184227 11184245 TTTCAGAGCACACGTTGTC 59 11184268 11184287 GTCACTCTGCTAACTACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.1 ENSRNOG00000054639 ENSRNOT00000073168 1 1 1 80 4 173974826 173974850 GAAACTATGGCCAGAAGATCC 59 173974892 173974910 TGGATACAGTAACCTGGGC 59 Novel Rattus norvegicus 81 AABR07010370.1 ENSRNOG00000054361 ENSRNOT00000086680 1 1 1 60 2 133290138 133290156 AGAAGTTAGACCACAGGGA 57 133290180 133290200 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060346 ENSRNOT00000088659 3 1 1 60 14 112298874 112298895 TTACTCAGTAAATGGCTACCCT 59 112298835 112298855 TACATCTGTTCAGACAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007758.1 ENSRNOG00000046691 ENSRNOT00000075436 1 1 1 61 2 27324679 27324697 TAGTTCTGAGCACTGCCTG 59 27324636 27324654 TCAGAGTTTGAGGACAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142138.1 ENSRNOG00000056579 ENSRNOT00000089509 3 1 1 69 3 9540857 9540876 TGGTTATTAAGGAGCATGGG 57 9540802 9540820 GAAGACAGTGTGAGGAACG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054482 ENSRNOT00000086166 1 1 1 60 17 17451844 17451862 ACCACTCCACAATTTGCTG 59 17451886 17451904 CTACTGGGCTACCTTCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059570 ENSRNOT00000078833 3 1 1 60 17 43922810 43922832 CGATACAGAGAAGATTAGCATGG 59 43922852 43922870 CGTTCACGGAATTAGTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052892 ENSRNOT00000079496 2 1 1 75 2 186583601 186583619 TCACATGTGCGTCAGTAGG 60 186583544 186583562 TCAGATGTTCACGGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061002 ENSRNOT00000082742 3 1 1 60 12 15115796 15115814 ATGTGCTGATACAGGACGG 60 15115836 15115856 GTATCTCATCCTTGCGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052324 ENSRNOT00000083772 1 1 1 74 14 75229480 75229501 TCCAAAGGTAGTGAGTTATCTC 57 75229536 75229554 GTATTGGATCGGGAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059879.1 ENSRNOG00000031045 ENSRNOT00000046350 3 1 1 60 4 40004991 40005009 TTATCTGCACTGCCAAGAC 58 40005033 40005051 TTCACCTTCCCAAAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128786.1 ENSRNOG00000050026 ENSRNOT00000071789 2 1 1 98 1 102284412 102284431 GGTAGCAGCTAGAAGAAAGG 58 102284333 102284351 TCTAGAAGCTGCCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059140.1 ENSRNOG00000060116 ENSRNOT00000089932 2 1 1 60 4 4502120 4502141 AAGAGCCATTTGAAATGACAGG 60 4502162 4502180 TGGCTCACTAGAGCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097038.1 ENSRNOG00000059928 ENSRNOT00000081357 3 1 1 81 10 46183013 46183038 GTTTGTGATCAACTCTATCAGGAC 60 46183080 46183100 GTTATTCTGTGGTGGCTTTCC 60 Novel Rattus norvegicus 81 AABR07056470.1 ENSRNOG00000058647 ENSRNOT00000078534 1 1 1 89 7 26440504 26457239 TGTGAAGACATACAATGCCC 58 26457289 26457309 GGGTTCATTGTCAGTATTCCA 58 Novel Rattus norvegicus 81 AABR07043453.1 ENSRNOG00000053751 ENSRNOT00000083821 3 1 1 82 19 28665650 28666847 ATCCATGAAGAACAGGCCA 59 28665586 28665604 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076586 1 1 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164332 75171892 CCATTTCAGTGGAGTTCATCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058043 ENSRNOT00000082724 3 1 1 60 14 31554882 31554902 TCAAGGGAATACAAGTAGCTG 58 31554842 31554861 AAACTCGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362999 ENSRNOG00000004239 ENSRNOT00000005614 3 1 1 60 6 59300465 59300487 GACTCAATGAAATCCTCAGTGAC 60 59300425 59300443 ACCATGACTTCTGGATCCT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054369 ENSRNOT00000081139 3 1 1 65 2 139869816 139869834 GCATCATTAGGTGGCAGAG 58 139869769 139869789 ATTACCAGATGTTCACAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052457 ENSRNOT00000088539 3 1 1 66 17 87158250 87158269 CACCTCAGCAGCATATACCA 60 87158298 87158316 TTGCGTGTCATTCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057098 ENSRNOT00000083604 2 1 1 60 2 53432092 53432111 ACAGAAAGCTTAACACTCCC 58 53432051 53432070 TTAGAAGGTGTTAGGCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055162 ENSRNOT00000080902 3 1 1 61 1 264686110 264686129 CAGGAAGATTAGCTTGACCC 58 264686152 264686171 ATTATGGAACGCGTCATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063672.1 ENSRNOG00000048410 ENSRNOT00000070791 1 1 1 62 6 41026076 41026094 GAATGACACTCCAGGTGGA 59 41026032 41026050 CACCTCTGACTCACTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063672.1 ENSRNOG00000048410 ENSRNOT00000070791 3 1 1 63 6 41026076 41026094 GAATGACACTCCAGGTGGA 59 41026031 41026049 GCACCTCTGACTCACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911249 ENSRNOG00000056251 ENSRNOT00000080740 2 1 1 115 1 85253162 85253180 TGACACTGAAGGTCTTGGG 59 85253259 85253378 CTGAGGCTCTGTACAGGTC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000056383 ENSRNOT00000078246 1 1 1 64 1 30150400 30150418 AATGAGGTTTATCCGAGGC 57 30150354 30150375 CATAACAGAAAGATGCTCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056383 ENSRNOT00000078246 3 1 1 66 1 30150401 30150420 CCAATGAGGTTTATCCGAGG 58 30150354 30150375 CATAACAGAAAGATGCTCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041974 ENSRNOT00000063727 1 1 1 60 1 249644137 249644155 CCTGAATGTGCCTGATCTC 58 249644095 249644114 GTACTAAACAGACCTGACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022023.1 ENSRNOG00000046240 ENSRNOT00000074553 2 1 1 90 13 103376381 103376399 ATGAGGATCAGACGGAAGC 59 103376304 103376329 CTCTTAAGTCGGAGTTCTTGC 59 Novel Rattus norvegicus 81 LOC100360491 ENSRNOG00000006283 ENSRNOT00000008276 1 1 1 79 8 6749876 6749894 CTTTAAGGCTTTCGCCAGC 60 6749814 6749832 CTTCTTTCGCCCTCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057265 ENSRNOT00000089084 2 1 1 60 2 33531796 33531815 GACTGTGAATAGCTGCACTC 59 33531755 33531773 ACAGATGGACCCATAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047771.1 ENSRNOG00000061900 ENSRNOT00000083099 1 1 1 80 5 46752103 46752125 AGATTTCACCTCACATGCG 58 46752041 46752060 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000089351 3 1 2 85 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983096 78983114 AACATCCAGTTCCACCAGG 60 Novel Rattus norvegicus 81 AABR07065049.1 ENSRNOG00000036502 ENSRNOT00000054610 2 1 1 60 6 106143531 106143549 TACTGTACACATGGGCTGG 59 106143572 106143591 TATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 3 1 1 227 1 204320863 204320882 TTCATTCCCTGTACAGCCTG 60 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028568.2 ENSRNOG00000058428 ENSRNOT00000085781 2 1 1 80 17 75207299 75207317 CCAAGTCAAGTGTGCAGAG 59 75207360 75207381 TAGCCTGTTTGACATGTGGA 59 Novel Rattus norvegicus 81 AABR07006619.1 ENSRNOG00000050486 ENSRNOT00000071075 3 1 1 217 1 242809206 242809224 CATCGAGAGCATCATGCAG 59 242809003 242809021 CACAGTGATGCTCTTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008724.1 ENSRNOG00000019037 ENSRNOT00000025809 2 1 1 80 2 71753819 71754348 AAAGTTACATCAGCTCAGGAC 58 71754387 71754408 CAATTCCACCTTCAGATTATGC 58 Novel Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 1 1 1 60 X 73622636 73622655 AATATGCAAGATGCAAGCTC 57 73622678 73622696 CCAGGTCACTAAACCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061860.1 ENSRNOG00000043615 ENSRNOT00000068882 1 1 1 60 4 149826578 149826596 GGCCTTGTTGAAGGAAGTG 59 149826620 149826638 TGGCTTGAACATCTGAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044082 ENSRNOT00000069349 2 1 1 60 2 48907267 48907287 GATCTTGGAAGCTAAGAAGGG 58 48907306 48907327 TAGAACTACAGATCTTCCACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044767 ENSRNOT00000070034 1 1 1 60 4 125508150 125508170 TGATCTCAGAAGCTAAGCAGG 60 125508110 125508128 ACTCCTTCATTCTCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113773.2 ENSRNOG00000058178 ENSRNOT00000090224 3 1 1 182 1 255170931 255171109 CCTGATTCGGCTAGAATTATATCAG 59 255170484 255170503 CCTCTTCCTCTTCTTCCTCC 59 Novel Rattus norvegicus 81 AABR07015078.2 ENSRNOG00000059504 ENSRNOT00000080984 1 1 1 60 14 46650337 46650355 TGTTCACCTTGGAGACCTG 59 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.1 ENSRNOG00000060553 ENSRNOT00000083719 3 1 1 62 Y 1590138 1590156 AAGAAGTTAGACCGCAGGG 59 1590092 1590113 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060080 ENSRNOT00000085065 2 1 1 60 14 20067088 20067106 ATGGCTGATCTAACTGGCT 59 20067046 20067067 CATTTACATGGAGTGTTGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 1 1 1 60 10 104714068 104714086 AAGAAGACGGCTGAGTCTG 59 104714026 104714045 CCCTTTGTCTAGGAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 2 1 1 60 Y 705881 705899 TGCATTTATGGTGTGGTCC 58 705839 705858 CATGCTGGGATTCTGTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055792.1 ENSRNOG00000046029 ENSRNOT00000040134 1 1 1 84 7 10091424 10091443 ATGAATGTGATCAGTGTGGT 57 10091487 10091510 CATAGGGTTTCTCCAGTATGAG 58 Novel Rattus norvegicus 81 AABR07035267.1 ENSRNOG00000046209 ENSRNOT00000070896 3 1 1 60 12 9001190 9001210 CTGAACTCAGAGATTTGCCTG 59 9001231 9001250 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014756.2 ENSRNOG00000047135 ENSRNOT00000072268 1 1 1 62 14 30326695 30326714 CAGATGTGTTTCCATTCCAC 57 30326652 30326673 GAATACTGCAAGAGCAATAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000054872 ENSRNOT00000086564 3 1 1 61 10 105646451 105646475 AAGGATGATCTAAGTTATCCCTGTC 60 105646491 105646512 TCAGTAAACCGTGAATCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051913 ENSRNOT00000090471 2 1 1 60 6 79926891 79926911 CAAGGATGAAGGAACTACTGG 58 79926851 79926871 CATGTAGATGGGACAACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000061409 ENSRNOT00000085510 3 1 1 60 14 2863661 2863679 CTAGCTCTGCATGATGTGG 58 2863619 2863638 TCACCACAGTTACTCTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059151 ENSRNOT00000086556 3 1 1 72 6 124644946 124644967 GCAGCACATACATATAAATGGG 58 124644895 124644913 ACAAATTGCCTGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055066 ENSRNOT00000083524 1 1 1 60 3 113086312 113086332 GTGCTAACATTGGAATGACAC 58 113086272 113086291 TTCATGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059449 ENSRNOT00000082659 1 1 1 60 10 59151756 59151774 GGAGTTCTGGGCTGTAGTG 60 59151795 59151816 TATTGATGCAGAACTTAGTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055813 ENSRNOT00000083091 2 1 1 60 2 23481228 23481246 TGCTACTGGTAAAGCAGTC 57 23481270 23481288 CGGTTATTTGTGCACACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057115 ENSRNOT00000087409 1 1 1 60 1 88820837 88820855 CCTTGTGGCTAACTGAGTG 58 88820795 88820818 GACAGGACATATCCGATATTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017639.2 ENSRNOG00000055238 ENSRNOT00000078176 3 1 1 60 15 29547996 29548015 AGAGTGGAAGACTGACATCC 59 29547955 29547974 GAGATGTGCAAAGAGCTACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067976.1 ENSRNOG00000057942 ENSRNOT00000077342 3 1 1 81 9 74960339 74960358 GGTAAGAAGTCCTGCAACTG 59 74960402 74960436 GGGACACCATGATACACAG 58 Novel Rattus norvegicus 81 Rn60_13_0849.2 ENSRNOG00000051254 ENSRNOT00000076116 1 1 1 80 13 79913061 79913081 CTGAATACTTGGATGGACGAG 58 79913121 79934303 GTTTGGTCCAGATGTATCCAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056816 ENSRNOT00000084287 2 1 1 60 2 52529277 52529295 TGATGCAGACAAGACTAGC 57 52529317 52529337 CTTCAAGAATTTGCATGTCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030386.1 ENSRNOG00000047289 ENSRNOT00000071187 2 1 1 60 10 83650417 83650436 GCCTTGAACTCAGAGATCCA 60 83650459 83650477 TCTCATGCCTTTGATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000053701 ENSRNOT00000084579 3 1 1 60 12 39663286 39663306 GTAGCAACTTGGAAGAAAGCC 60 39663246 39663266 AACAAGTATTCCCTGTTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051549 ENSRNOT00000086347 3 1 1 60 12 25779616 25779637 CACACTAAGATTGGAACAACAC 58 25779657 25779676 TATGAGTGTCATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003537.1 ENSRNOG00000021484 ENSRNOT00000032154 1 1 1 60 1 114175213 114175231 TATGTGGAATGCTCAGCTC 57 114175255 114175273 TGATAGCCTCGTCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051253.1 ENSRNOG00000056675 ENSRNOT00000090568 2 1 1 80 3 4139246 4140186 ATACACAGCCTATAGTGGCA 58 4139185 4139209 CCCTCATAGTAGAAGATATAGTGGT 59 Novel Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 2 1 1 60 8 42786944 42786965 TTCTGTTCCTGAGCATCGT 59 42786989 42787007 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 1 1 1 83 X 73370315 73370333 ATAGCCAAGAACTTGCCTG 58 73370378 73371453 GCCAGTTAACAGTATCAAGGT 58 Novel Rattus norvegicus 81 snoU54 ENSRNOG00000059478 ENSRNOT00000085342 2 1 1 65 5 16706729 16706749 GCGATGAGGAGATACCTACTG 60 16706684 16706702 TATCGGCTCAGAATAGCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007690.2 ENSRNOG00000041749 ENSRNOT00000063502 2 1 1 75 2 24178741 24178759 GGCTGTTAAATGGCGATCC 59 24178798 24178816 TGGCTGAAGAGACTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068285.2 ENSRNOG00000061524 ENSRNOT00000086903 2 1 1 93 9 95786920 95786943 GAAGATCAAACTGACCGGC 59 95786845 95786864 CTGATAGGACTTCACAACGG 58 Novel Rattus norvegicus 81 AC120070.1 ENSRNOG00000054181 ENSRNOT00000085373 3 1 1 80 1 148267798 148267819 AGACAATGAGCTCAACATTGAG 59 148267858 148281760 TCTCTTCCTGGACTTTAGCTG 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 1 1 1 60 5 6800274 6800292 TCGTACTGTAGCTGTTGGT 58 6800314 6800334 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010476.1 ENSRNOG00000057358 ENSRNOT00000083443 2 1 1 80 2 137150774 137150795 ATCAAACCTGTACTTGCAAGAC 59 137148853 137150735 TCTGTTCTTCTGAACGAAAGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058635 ENSRNOT00000086372 3 1 1 60 3 165667601 165667619 ATCCTAAAGGCTGCAGGTG 60 165667559 165667577 TCTTCTCTGCCACCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057442 ENSRNOT00000085558 1 1 1 61 3 177169958 177169978 CCATATACCAACATTGAACCG 57 177170001 177170019 GTGTCTTCCTTGCACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.3 ENSRNOG00000050314 ENSRNOT00000072390 2 1 1 60 2 231875233 231875252 TTAAACGTGGTTGTCCTTGC 59 231875274 231875293 CATCACCCAAACATGGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 2 1 1 68 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634331 107634349 ATGGACTTGGCTTAGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056991 ENSRNOT00000082565 2 1 1 60 2 82960158 82960181 GATAAAGAGAAGATTAGCATGGCC 60 82960199 82960218 GAATGCTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057845 ENSRNOT00000078090 2 1 1 60 1 215027281 215027300 CTGAAACTGGGACAGTATGG 58 215027240 215027260 GAATCTCTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059590 ENSRNOT00000081502 1 1 1 60 1 73770493 73770513 AGCTAGAAGAGGAGATACCAG 58 73770453 73770471 GGTAGATAAGCCTCACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053442 ENSRNOT00000089159 1 1 1 60 6 133824031 133824050 CCAATGATGAGATCTGGTGG 58 133824070 133824091 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD46 ENSRNOG00000061361 ENSRNOT00000087225 1 1 1 64 5 136022659 136022677 ATCCTTAGGCGTGGTTCTG 60 136022613 136022631 GACAAGTCCTTGCATTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 2 1 1 60 5 61714750 61714768 GTCTACAGGCCAATCTGCT 60 61714791 61714810 TAGTCCTCATATGAGGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000076576 3 1 2 81 13 84968734 84970074 CAGTACAGGTATCAAGAACACC 59 84968674 84968692 CTCTAGTAATGCAGGGCAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061887 ENSRNOT00000079428 3 1 1 60 9 17933211 17933232 GGATGACCTTCCCTGAATAGAG 60 17933253 17933271 CACAGCTACTCGTACACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061807 ENSRNOT00000079387 3 1 1 61 1 146766594 146766612 AGAGAAGATTAGCATGGCC 57 146766551 146766569 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048637.1 ENSRNOG00000059056 ENSRNOT00000088086 1 1 1 80 5 85857427 85857649 TCAGGACCACAGAAATAGCAG 60 85857365 85857383 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 AABR07048637.1 ENSRNOG00000059056 ENSRNOT00000088086 2 1 1 80 5 85852913 85852935 AGATTTCACCTCACATGCG 58 85852851 85852870 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07042226.1 ENSRNOG00000058521 ENSRNOT00000088194 1 1 1 82 X 150660900 150666257 CATATAAGTTACACGGCAGCAG 60 150660839 150660858 ACACTCATCAGTCACAAGGT 59 Novel Rattus norvegicus 81 AABR07009919.1 ENSRNOG00000049341 ENSRNOT00000071473 2 1 1 62 2 116993012 116993030 CTTTGTAGACCAGGCTGGA 59 116993056 116993074 CAGCTCTTCAGAGGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.2 ENSRNOG00000059176 ENSRNOT00000086458 3 1 1 87 4 101909425 101909807 CTCTGGATCCAGGAAACCC 60 101909858 101909876 AGATGGAGGCTGATTGTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035046 ENSRNOT00000053169 3 1 1 60 1 226610483 226610501 ACCGATCTCATCTGATCCT 57 226610441 226610460 TCCCATCCATGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047212.1 ENSRNOG00000060477 ENSRNOT00000090963 2 1 1 63 5 24145766 24145787 GATGGACTAGAAATCCATTGGG 59 24145811 24145829 CTCTTACCGTAGTCGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061908 ENSRNOT00000088275 3 1 1 60 1 190338271 190338289 TTCGGTCAAGGGTATACGA 58 190338313 190338331 TCGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076556 2 1 3 98 2 208416314 208419705 GGTCCAGGTTTGTATAATGGT 58 208416236 208416254 TCAGGAAGAGGTGGTAGAG 57 Novel InUTR Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076666 1 1 3 113 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208416279 208416297 GAAAGACCCTTGTTGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061568 ENSRNOT00000079065 3 1 1 60 6 8579243 8579265 GATACAGAGAAGATTAGCATGGC 59 8579205 8579223 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ6 ENSRNOG00000057911 ENSRNOT00000088985 1 1 1 60 20 11478100 11478118 GAAGTTGCCTCAATCCGAG 59 11478142 11478160 AGACAGATAAGACGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.2 ENSRNOG00000059138 ENSRNOT00000083129 3 1 1 60 5 59113521 59113540 TCGTTTCCAGATGAGAATCC 57 59113480 59113500 AACAATCTCTGAAGGACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.3 ENSRNOG00000051485 ENSRNOT00000086722 2 1 1 60 15 30853227 30853249 TGCACCTATCAGACTACTTACTC 59 30853265 30853287 CACTGAGATATTGCACATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000051501 ENSRNOT00000090781 2 1 1 60 14 107604182 107604203 TAAATACATCACCATCTCTGCC 58 107604222 107604242 TTAGAAACCAAGTGTCTCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058210 ENSRNOT00000077410 1 1 1 60 5 144877388 144877412 GACTATGTCTTTGCTCAGTATTCTG 60 144877352 144877373 ATGCTAGGCTCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015555.1 ENSRNOG00000045758 ENSRNOT00000072473 2 1 1 107 14 63295543 63295561 GACAGAGAAGGAGGGAAGG 59 63295454 63295473 TAATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059067.1 ENSRNOG00000055910 ENSRNOT00000083917 3 1 1 96 4 2972630 2972650 TTCTTCTGACTCACTTGGC 57 2972710 2972728 ATTGAAGATGGTCCAGGGA 58 Novel Rattus norvegicus 81 AABR07052085.1 ENSRNOG00000005951 ENSRNOT00000007800 2 1 1 60 3 35748879 35748898 GGCAATTACAACAACCAGTC 58 35748920 35748939 TGCTTCCAAAGTTTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006727.1 ENSRNOG00000052057 ENSRNOT00000082874 2 1 1 60 1 250300927 250300946 GAACTGGAGGAAGACTTTGC 59 250300886 250300904 CCAGCTCTTTGATCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054997 ENSRNOT00000084153 3 1 1 60 10 21386907 21386925 ACTCCATGTGCATTTCTCC 58 21386865 21386884 GTAGACTGGTCCTCTTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027235.1 ENSRNOG00000051931 ENSRNOT00000079788 3 1 1 81 17 20619325 20619344 CTATAGCCAATGCCTACGTG 58 20619386 20619406 GTGTGATGTGTTGAGAGTGTG 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07028839.1 ENSRNOG00000059656 ENSRNOT00000081311 1 1 1 95 17 88037338 88037356 TTTCCAAGACTCCTCCCTG 59 88037415 88037435 CCACTTCCAAAGCAGAACG 60 Novel Rattus norvegicus 81 AABR07019663.1 ENSRNOG00000057509 ENSRNOT00000089541 3 1 1 60 13 759822 759842 TCCATCATGTTCTAGTCACAC 58 759860 759882 ACTAGCATCTCTACTTCTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059797 ENSRNOT00000087663 1 1 1 60 13 80950664 80950685 CTAGAGTAATTGCAGGTGTGAC 59 80950625 80950644 CTCTTCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053853 ENSRNOT00000085219 1 1 1 60 1 235254000 235254020 CTAGAAAGTGTGACTTCAGCC 59 235253960 235253981 CTTTCAAGACCCTGTAAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054845.1 ENSRNOG00000049107 ENSRNOT00000070970 3 1 1 78 3 171784406 171784424 CTTCTTCGTCCAGGTCAGG 60 171784346 171784365 GCTTCAAACTCCGAAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000053822 ENSRNOT00000091174 1 1 1 60 7 80088053 80088071 CTGGTTGGAAGGTAGTGAG 57 80088011 80088030 GAGTTCAATCTGTAGCGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 2 1 1 64 8 45701549 45701568 TTAGTGCTATCTTCATGGCC 58 45701502 45701522 TACTCTCACACCAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053563 ENSRNOT00000083084 1 1 1 60 3 20410591 20410612 CAGTACAGAGAATTAGCATGGC 59 20410552 20410572 GGAATGCTTCAAGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000055094 ENSRNOT00000091248 2 1 1 60 3 129328783 129328803 AAGACTTTGCTGATACACTCC 58 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020835.1 ENSRNOG00000036368 ENSRNOT00000054487 3 1 1 63 13 43385466 43385484 ACAACCAACGCAAACTGAC 60 43385511 43385529 AGTGAGGCACTCAAAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 3 1 1 60 20 32909199 32909218 CTAGTACTCTGCAGGTCCTG 59 32909238 32909259 TGCAATCTATTAATGCACAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059847 ENSRNOT00000080474 2 1 1 60 4 183569644 183569662 AGAGAAGATTAGCGCATGG 57 183569602 183569623 TATGGTACACTTCAGAATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034739.1 ENSRNOG00000058590 ENSRNOT00000086514 1 1 1 80 11 86094798 86095951 AGATTGACTGTCCTAGACCA 58 86095993 86096012 GTCAGTCTTGAGCTCTTCAG 58 Novel Rattus norvegicus 81 AABR07029803.1 ENSRNOG00000057038 ENSRNOT00000089390 3 1 1 80 10 52023656 52023679 AGATTTCACCTCACATGCGA 60 52023595 52023615 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07022014.1 ENSRNOG00000043772 ENSRNOT00000069039 2 1 1 76 13 102731776 102731794 TAAAGGCTGGACCTAGACG 59 102731718 102731736 TAAAGGCCGGAGTTAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 3 1 1 60 15 87221766 87221784 ACCTCAGAAGCTAAGCAGG 59 87221808 87221826 ATTAAAGGGAGGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105628.1 ENSRNOG00000028442 ENSRNOT00000008636 1 1 1 85 3 78697661 78697684 CTGCCAATTGATAAATGTGCTG 59 78697728 78697748 ACCTCAGAATTCCTGAGAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061278 ENSRNOT00000088859 2 1 1 60 10 57895861 57895882 CAAATAGAGGAGGATCAAGGGT 59 57895901 57895921 TGTTTAGAGGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 1 1 2 80 4 113979374 113979514 TTTCAAGAACAAAGGCGATCTG 60 113979550 113979573 ATCTCAGTATCCTGAATCTGTTCC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061397 ENSRNOT00000086684 2 1 1 60 5 119052481 119052500 TGGGTGGTTATTTACTCTGC 58 119052440 119052460 ACGTAATGACAAGGATCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053480 ENSRNOT00000083911 1 1 1 60 3 4092854 4092874 ATTTCTACGCTCAGTGTTCAG 59 4092814 4092833 AAATGTCAGGCTACAAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.5 ENSRNOG00000051245 ENSRNOT00000075848 2 1 1 60 X 70421890 70421908 GCAGGAGGCTAAGAATGGA 59 70421848 70421867 CCTGTTTCCTTCCAACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060764 ENSRNOT00000081276 1 1 1 60 13 66565006 66565026 ATGCAGAGAAGATTAGCATGG 58 66564966 66564985 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052250 ENSRNOT00000079163 3 1 1 60 13 6651628 6651647 TTAGTAAGTGGCACAGAGGA 58 6651587 6651606 ATGTTCACAGGTGAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000059509 ENSRNOT00000083292 3 1 1 60 13 78854992 78855011 TAGTTCAGCAGACGTGACTC 60 78855032 78855052 CAGATACATCAGATAGGAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029809.1 ENSRNOG00000060742 ENSRNOT00000083485 2 1 1 80 10 52478492 52478515 GAGATTTCACCTCACATGCG 59 52478431 52478450 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 3 1 1 60 10 104714041 104714059 AGACTCTGCCGATACACTC 59 104713999 104714018 TTTCTCAGTAAGGGCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052610 ENSRNOT00000091875 3 1 1 60 10 69763740 69763759 GAACCTCAAAGCAAACTCTC 57 69763699 69763718 TTCTTGGAATCAGTCCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061368 ENSRNOT00000084326 1 1 1 60 5 148105191 148105213 GGAGATAACCACTATCAAGAAGG 58 148105153 148105173 CCTGCGTATAATAGATCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.1 ENSRNOG00000047073 ENSRNOT00000074732 1 1 1 60 7 67140019 67140039 GTACTGCACTCCTGTAATTCC 59 67139979 67139999 TTTGAACTCCCAATCATCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053254 ENSRNOT00000086636 1 1 1 60 20 46535683 46535701 CTACCCTTGCTTGGAAGTG 58 46535641 46535660 GCTTGTTTGGAGATTTCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052295 ENSRNOT00000088285 3 1 1 62 3 38037665 38037683 GGCTACTGTGTCACATGTG 59 38037708 38037727 CTGAGTGTAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042874.1 ENSRNOG00000055181 ENSRNOT00000085429 3 1 1 60 19 13139775 13139795 TAGAAGACCAAGATCAAGGTG 57 13139815 13139835 AGACACATTGAAAGGCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002683.1 ENSRNOG00000054609 ENSRNOT00000078462 3 1 1 91 1 80982566 80982589 GATCTGGGACACAGCAGAG 60 80982642 80982662 TCTTGGTGATGTCATACACGA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052252 ENSRNOT00000084314 3 1 1 60 13 80079629 80079647 GAGAGGCTACGTCTATGCT 58 80079670 80079689 TTGGGCTGCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 2 1 1 60 17 52755779 52755798 CCTAAGCAATCCAAAGGCTC 59 52755817 52755839 CTCTTTCTCCTTGATAGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057547 ENSRNOT00000081872 2 1 1 60 6 28838202 28838221 CAAACAAGCTCTCCTTACCT 58 28838243 28838262 GTGGTTCTAACTTCAGGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 1 1 1 93 3 145831638 145831657 CTTCCATTTGCGGAACGAG 60 145831714 145831732 ACAGACCATCATCCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055571 ENSRNOT00000085498 1 1 1 60 3 34555962 34555982 GCCAATAGAGATAATGCAGGT 58 34556001 34556022 TTTGTGTCACAGACTAATCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000054041 ENSRNOT00000078163 3 1 1 61 15 4158934 4158952 AGTGCTTTGTTGCCTTTGG 60 4158891 4158910 TGTAGAACTTCCTGATTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059617 ENSRNOT00000086312 3 1 1 60 10 106084727 106084748 CAGTCAAGGGTATATGAGTAGC 58 106084769 106084787 TCTTGAGAGCTTGTCAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.4 ENSRNOG00000061301 ENSRNOT00000087532 1 1 1 60 13 52265993 52266012 TACGTCTTGCAGAAATTGCC 59 52265952 52265971 AGTAAGTGCTTGTCAAACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056452 ENSRNOT00000088371 2 1 1 60 X 11888069 11888088 GGAACCGTACAGAGATTAGC 58 11888028 11888049 ATGCTTCACCAACTTGTATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 3 1 1 60 X 8059532 8059552 GGAAGATTTGCTCTTCTTTGC 58 8059492 8059510 CCAAGGATCTAGCAGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059077 ENSRNOT00000083530 1 1 1 60 7 137917812 137917833 CTTTATCTTTGGTGTGCAATGG 59 137917773 137917795 ATAGGCTACATACACTACCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032413.1 ENSRNOG00000048770 ENSRNOT00000074068 3 1 1 63 18 64511582 64511601 CCCAGAGTCCTAACAATGTC 58 64511623 64511645 TCTCTTCATGTATGAGGTCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 2 1 1 60 2 2510226 2510248 TACTGGAACTTATCAGTTGCC 58 2510268 2510288 TCTGTGTTCTTGTACTCTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043573.1 ENSRNOG00000046882 ENSRNOT00000054555 2 1 1 61 19 29481768 29481789 CTTGCTTAATGCTAAGAAAGCG 59 29481811 29481829 CTAGCCTTTAACGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044282 ENSRNOT00000069549 1 1 1 77 6 109955207 109955225 TTTAGGTCTATGGCCTCGC 59 109955148 109955166 ATCCAAGTACCAACCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052317 ENSRNOT00000087654 3 1 1 60 15 64346715 64346735 TCAAGGGTATACAAGTAGCTG 57 64346754 64346775 GTACCTTGAGAACTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060452 ENSRNOT00000085791 2 1 1 62 15 55520390 55520409 CAGTATCGTAGCCAATGAGG 58 55520347 55520368 GTGGTCTTGACTTTAGATTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055467 ENSRNOT00000085952 2 1 1 60 20 19191580 19191598 ATCCAGATGTAAAGCCCAC 57 19191619 19191640 GAGACACATCTGTTCAAGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034530 ENSRNOT00000052653 1 1 1 60 20 33366702 33366725 CAATCTCATATGATCTCAGAAGCC 59 33366665 33366686 TCTCCCATTCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 3 1 1 60 4 155169761 155169781 AGACTCCCATTATGATCCAGG 59 155169801 155169823 TTATGAGTTCTCTGCTTGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060156.1 ENSRNOG00000027692 ENSRNOT00000038047 2 1 1 60 4 60054390 60054410 GTACAAAGAACAACCAGCTCC 60 60054429 60054450 CTAGTGAAGCCACATTTATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054830 ENSRNOT00000081076 3 1 1 90 6 49954995 49955014 CCTAGAACCATTGCAAGTGC 60 49955067 49955085 TCTGAACACTGAGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551497 ENSRNOG00000057156 ENSRNOT00000085882 3 1 1 60 11 29069344 29069362 GTGGCTATGGTAGCTATGG 57 29069386 29069404 GACCAGTACCTTCTACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 3 1 1 60 18 31515559 31515578 CTGATAGCATCTGGTCTTGG 58 31515596 31515619 CCTCCTATCCAAATATTAACCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056661 ENSRNOT00000082206 1 1 1 60 3 20347760 20347778 GTGCTCACTTTGGCATCAC 60 20347718 20347737 GGAGCCATGCTAATTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052908 ENSRNOT00000081038 3 1 1 63 7 140132879 140132897 TTCAAGCAGACGCCTAGAG 60 140132834 140132853 CTCTGTTGAAGTCCAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044429 ENSRNOT00000069696 3 1 1 60 15 46039590 46039609 GGAAACTAAACAGGTCAGGC 59 46039631 46039650 CCCAGAATCTCCAGGTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.2 ENSRNOG00000055182 ENSRNOT00000083977 2 1 1 60 3 150303180 150303198 GGACATTCTGCTTTCAGCC 59 150303138 150303160 CTTGTTCTTCTTGATCTCGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057897 ENSRNOT00000085806 1 1 1 60 X 41163566 41163586 GAGTCCCTGAGGACATAAGAG 59 41163526 41163545 CTGACAGGTATCTGAGTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052139 ENSRNOT00000080561 1 1 1 60 18 78641836 78641854 TGAAATTGGACCGACACAG 58 78641875 78641896 AATGTGTACATCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000056350 ENSRNOT00000079660 1 1 1 63 3 93979998 93980017 TATGCACTGTTGTGGGAGAG 60 93980043 93980061 ATTGTGAGGCTAGGACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056815 ENSRNOT00000081001 3 1 1 60 18 74069180 74069199 GACATTGCAATGTGATTGCT 58 74069221 74069240 ATACCTCTCCTCTTTGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053120 ENSRNOT00000089649 1 1 1 61 15 53961176 53961197 GTGATACCATGGTCATAAAGGT 58 53961216 53961237 GGAAATCACATAAGGCAAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060678.1 ENSRNOG00000049140 ENSRNOT00000071086 1 1 1 80 4 89252358 89252380 AGATTTCACCTCACATGCG 58 89252423 89252442 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000061580 ENSRNOT00000088601 2 1 1 60 18 63230087 63230105 TTGCACTCCGGATGTACTG 60 63230045 63230065 TAAGTAGTCGAGCTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 1 1 1 60 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751001 65751019 ACTGCTTCCTAACGTCGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053681.1 ENSRNOG00000043539 ENSRNOT00000068806 3 1 1 60 3 120143643 120143663 CCTTGAACTCAGAGATTCACC 59 120143603 120143621 AGCACATGCCTTTAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060289 ENSRNOT00000090777 1 1 1 60 X 23467627 23467646 GAACCTCCAAACAAGCTCTC 59 23467586 23467604 TTGGAAGCTTGACTACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060957 ENSRNOT00000084449 3 1 1 61 5 27757691 27757709 GTCTGAGCAAAGTGGAGAG 58 27757729 27757752 CAATCAGTCAGATGTTCATAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056405 ENSRNOT00000084719 2 1 1 60 18 74993295 74993315 GATACCATGACCTTGAAGACG 59 74993336 74993355 TCATAAAGAGTGCAGAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130624.1 ENSRNOG00000046397 ENSRNOT00000073929 2 1 1 60 X 15536949 15536968 TTTGTTATGTGTTCCTGGGT 57 15536908 15536928 ATGAGTTTGAAGCTAGCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057379 ENSRNOT00000077940 2 1 1 60 X 33333975 33333998 GATAATCTGGCTACAACATCTGTC 60 33334016 33334035 CCAGATCAGGTGAATCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052105 ENSRNOT00000089755 2 1 1 60 X 131743025 131743043 AGAATGATCTGGCTGGGAC 59 131743066 131743085 AGATCTGGCAAATCAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026842.1 ENSRNOG00000031349 ENSRNOT00000047795 2 1 1 60 17 2920798 2920816 TCAAAGGGTTCATCTCCGT 59 2920837 2920858 CCTCATGATTCTTTCACTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040532 ENSRNOT00000062285 3 1 1 60 7 52188790 52188808 CATGTCACCGTGAATGCAC 60 52188831 52188850 AAGGCCTAACTGCAATTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058874 ENSRNOT00000091019 2 1 1 60 7 139421220 139421239 GTACTCTCCTGCTAGAACCT 58 139421260 139421280 TCTTGTGTTACATGCGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051786 ENSRNOT00000083260 2 1 1 60 4 17801311 17801331 CTTCGGTCAAGGGTATATGAG 58 17801353 17801371 TCAGAGCTTGTTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056247 ENSRNOT00000083070 1 1 1 60 18 40542273 40542292 TTCGGTCAAGGGTATACGAG 59 40542315 40542333 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061296 ENSRNOT00000079804 3 1 1 60 18 39796105 39796124 TGAGAAACTTGGTGACAGAG 58 39796145 39796165 ACATAGGTTAGAACATGGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000051715 ENSRNOT00000089757 2 1 1 60 18 63622299 63622319 TCTAGTCTGCTTAGCTCTGTG 59 63622259 63622277 GGCATTACTATTGCCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054276 ENSRNOT00000088801 1 1 1 60 15 88744269 88744287 CTGCTCATTTCAGCAGCAC 60 88744310 88744329 GGCCATACTGATCTCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054276 ENSRNOT00000088801 2 1 1 61 15 88744269 88744287 CTGCTCATTTCAGCAGCAC 60 88744312 88744330 GGGCCATACTGATCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058015 ENSRNOT00000079771 1 1 1 60 X 5193985 5194005 TTACTTCAGCAGCACATATGC 59 5193945 5193966 TATGGGTCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061830 ENSRNOT00000085740 1 1 1 60 6 128084079 128084099 GGAGACAGGCTATGTCTACAC 60 128084039 128084060 TGCTTGCTTACTTTCAGATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.4 ENSRNOG00000060552 ENSRNOT00000090133 1 1 1 103 6 139719184 139719286 TTCCAACCTGTGTCCTGTC 60 139719099 139719117 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000053761 ENSRNOT00000081960 1 1 1 60 6 133834490 133834508 ATTGATGATGGCCACTCGT 60 133834530 133834550 GGACCTCAGAGACTTAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115418.1 ENSRNOG00000043746 ENSRNOT00000069013 1 1 1 60 15 4295140 4295160 GGGTAGGCTTTGAGATTTCAG 59 4295181 4295200 CAGCAGGAAGAAAGAGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043101.1 ENSRNOG00000055046 ENSRNOT00000084965 3 1 1 60 19 21049309 21049330 TGGGAAGATTGTTGTGAATCTC 59 21049348 21049369 TCTAGGGCTTATAACTCCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060234 ENSRNOT00000077987 1 1 1 72 5 164490575 164490593 CTCCAGCAGCACATATCCT 59 164490629 164490647 CATGTTCTCCTTGTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060234 ENSRNOT00000077987 3 1 1 75 5 164490575 164490593 CTCCAGCAGCACATATCCT 59 164490632 164490650 TTGCATGTTCTCCTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056893 ENSRNOT00000090399 3 1 1 60 15 84177285 84177305 AGATAGGATGAAGCATGTGCA 60 84177245 84177264 ATTTCAGGAGAAATCGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 1 1 1 60 15 109415296 109415314 AGAGACTTTGACAGCCCAG 59 109415336 109415356 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053454 ENSRNOT00000087446 2 1 1 60 4 11286614 11286632 CTCTTCTTTCACCACCCAG 58 11286653 11286674 CATTGCTATAGGATGAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053473 ENSRNOT00000077395 2 1 1 60 15 13869146 13869165 GCAGAGAAGAGTAATGTGGC 59 13869105 13869123 TGTGGACTGCTTGGTTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053473 ENSRNOT00000077395 3 1 1 60 15 13869148 13869169 CAATGCAGAGAAGAGTAATGTG 58 13869109 13869127 GACTGCTTGGTTAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052891 ENSRNOT00000083867 2 1 1 60 20 51862797 51862816 GTACTCTGAATTGCTGTCCC 58 51862756 51862777 TCCACTACCACAAATTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044437 ENSRNOT00000069704 2 1 1 60 20 55529410 55529430 CTCAGTGTAGTCTGATCTTGG 58 55529450 55529470 TCCCACTCAAGGATTAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053809 ENSRNOT00000085136 3 1 1 60 5 128628225 128628246 TACTAAAGTTGGTCCGATACAG 58 128628186 128628206 GCCTATCCTATCACTCATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 2 1 1 83 7 121773598 121773618 AAGACCCTTGACTGCACTC 60 121773665 121773683 CTTGATCCTCTCCTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC120246.1 ENSRNOG00000048000 ENSRNOT00000071810 2 1 1 60 19 25668834 25668853 TATGTAGACCAGGCTAGCCT 60 25668876 25668894 AATACTCAGGAGGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115670.2 ENSRNOG00000060002 ENSRNOT00000077475 2 1 1 60 17 45745902 45745923 GAAAGATTACTTCAAAGCAGGG 58 45745863 45745884 AAACTCAAATACCTCTCGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034799 ENSRNOT00000052922 3 1 1 60 9 64068871 64068889 CGATCTCGTCTGATCTCGG 60 64068829 64068849 CCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000054676 ENSRNOT00000086482 3 1 1 83 19 55874991 55875009 GAAACAGCAAACAGCATCC 58 55874926 55874944 GATCGTTAGTGGCAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051773 ENSRNOT00000081852 3 1 1 60 19 9716525 9716547 GATGTCTTACTTGTAGCTCAAGG 59 9716566 9716585 GAAGAGCCCAGTTCTTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052699 ENSRNOT00000083058 2 1 1 60 19 11151098 11151117 GCATAGTGGCAGTATTGCAG 60 11151057 11151079 CTTCTATTAGCAATAGCCTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000061393 ENSRNOT00000091576 3 1 1 60 11 84548931 84548949 GTAGCCTTTCCTTTCCCTG 58 84548889 84548909 CTTTGTTACTTATGCAGCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056081 ENSRNOT00000077538 1 1 1 60 18 8703265 8703285 ACTCACTAGAACCTCTAAGCA 58 8703225 8703244 AGCCTTAACCACTTTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059030 ENSRNOT00000086381 2 1 1 60 5 59230816 59230838 GGAACGATACAGAGAAGATTAGC 59 59230778 59230796 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059918 ENSRNOT00000087014 1 1 1 60 18 56799787 56799806 TTGAAGTGGGAACAATACGA 57 56799746 56799764 TTGTCATGTGGGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054912 ENSRNOT00000079319 2 1 1 60 11 87547839 87547860 ATACAGAGAAGATTAGCATGGC 58 87547881 87547899 GGAACGCTTCACGAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054471 ENSRNOT00000085417 2 1 1 60 19 28930875 28930897 GGAACGATACAGAGAAGATTAGC 59 28930917 28930935 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061329 ENSRNOT00000086484 3 1 1 60 18 36161916 36161938 GATACAGAGAAGATTAGCATGGC 59 36161957 36161976 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044715 ENSRNOT00000069982 1 1 1 60 18 64976412 64976431 TGCATGTACCTGATTCTGTC 58 64976371 64976389 AAGAACTAACCAGGCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068712.1 ENSRNOG00000056280 ENSRNOT00000088483 2 1 1 60 9 116297940 116297959 CTGCACTACTGTATGAGCTG 58 116297899 116297920 CTTCAGGAAATCGATTCCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043271.1 ENSRNOG00000057212 ENSRNOT00000090756 3 1 1 82 19 26944633 26945892 ATCCATGAAGAACAGGCCA 59 26944569 26944587 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055656 ENSRNOT00000087571 1 1 1 60 6 5216258 5216277 TGTACTGATCAGCAGGTGAC 60 5216295 5216318 ATAGGTTAGAACACTGAGCATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000056879 ENSRNOT00000079344 2 1 1 61 20 11934173 11934191 AGAGACTTTGACAGCCCAG 59 11934130 11934150 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060768 ENSRNOT00000085428 2 1 1 60 7 5602200 5602220 TCTGTTACACTGTTGATCCCT 59 5602242 5602260 ACACCTGCCTAATGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122630.1 ENSRNOG00000060740 ENSRNOT00000090086 1 1 1 60 4 41902686 41902704 TTGTAATGAGACCCAGTGC 58 41902728 41902746 TGTGAAACGCTGAACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 1 1 1 60 7 32193188 32193208 GTTTACGGCAAAGTCAATACC 58 32193228 32193248 CAGCATACTGTGTCTTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055213 ENSRNOT00000078767 1 1 1 104 7 144090360 144090378 ATCCACAGGACAGGTACAG 58 144090446 144090464 TCACCTCTAGAGGTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046866.1 ENSRNOG00000060709 ENSRNOT00000085321 2 1 1 61 5 10125141 10125159 AGACCTGCTGATGCTACAG 59 10125182 10125202 CAGAATAGAAAGGCTCACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059692 ENSRNOT00000081956 3 1 1 60 9 42296680 42296700 GGAGCTATACAGAGAAGACCA 59 42296719 42296740 CTTCAGGTATTTGCATGGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056085 ENSRNOT00000083136 1 1 1 60 11 27642511 27642532 TGAGAAACCAAAGAAAGAGGAG 58 27642472 27642494 GATGTTCATAGGTGAGAACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000079489 2 1 2 80 17 14943492 14943511 TGTACGAAGAAAGGAACAGG 58 14942043 14943449 CTCCTGGGTATGCTTATGC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061201 ENSRNOT00000080461 3 1 1 67 6 75622883 75622901 TTATCCATTGCACTCCGGA 59 75622834 75622852 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.4 ENSRNOG00000057681 ENSRNOT00000090704 1 1 1 68 6 140586985 140587004 CAGCCATGTATTACTGTGCA 58 140585094 140585112 TTGTGATGCCGAAGTAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015500.1 ENSRNOG00000057727 ENSRNOT00000089645 1 1 1 63 14 59811543 59811567 AAGCACTTTACTTGAGCAACTC 60 59811591 59811609 TTTGGAGATTCTGGTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC134651.1 ENSRNOG00000028529 ENSRNOT00000037907 2 1 1 61 2 205504434 205504452 AAACACTACACAGGACCAG 57 205504478 205504496 GGCTGCTTCTAATGCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063248.1 ENSRNOG00000053778 ENSRNOT00000080972 3 1 1 70 6 24200594 24200616 CACATACACTCACACTCATACAC 59 24200546 24200565 CGAGTGTGAGTATAGGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053635.1 ENSRNOG00000024256 ENSRNOT00000031588 2 1 1 141 3 117766145 117766163 CCTCTTCAAGTATCGTCCG 58 117766268 117766287 GGAAAGGGAGGATAGATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000052504 ENSRNOT00000078492 1 1 1 60 7 50726344 50726363 ATAAACGCATGCTTCATCCA 58 50726303 50726321 ACCAGAGATTGGTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061413 ENSRNOT00000084653 3 1 1 60 4 160416189 160416210 CTTCCTCACTTACTGTTCATGC 59 160416227 160416249 GGTCATCCTCTTTAATCAAGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 1 1 1 60 6 91581074 91581095 TGGTATTGAAGAGGTGAATGTG 59 91581035 91581053 AGGGTTGTTAAAGTGGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043141.1 ENSRNOG00000033819 ENSRNOT00000045060 2 1 1 60 19 23832798 23832818 AAGAAGCCTAAGAAGTCAACC 58 23832836 23832858 CATCTTCTACTGGATGTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054341 ENSRNOT00000082101 1 1 1 60 4 101803228 101803246 ACACATGTGTCAGTAGGTG 57 101803186 101803207 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056621.1 ENSRNOG00000041450 ENSRNOT00000063203 3 1 1 70 7 32983215 32983234 CTATGTGGACTCTAGCTGCC 60 32983164 32983182 ATGTCTACACTGGCTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.2 ENSRNOG00000057667 ENSRNOT00000090254 3 1 1 77 13 82125799 82125817 TCTTTCTCCACATCCTCGC 60 82125859 82125878 GATTTCACCTCACACCAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011733.1 ENSRNOG00000061317 ENSRNOT00000089083 1 1 1 60 2 167607458 167607479 CTTCACCAACAGAATACAAGAG 57 167607419 167607440 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051804 ENSRNOT00000091959 3 1 1 60 4 93889308 93889329 CATTGCAGGTATGTCATATGAG 57 93889269 93889287 CATTTGCATAGCCTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052281 ENSRNOT00000079210 3 1 1 62 7 126031120 126031138 ACAGAGATTAGCATGGGCC 60 126031163 126031182 TAAATATGGAACGCTTCGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061586.1 ENSRNOG00000036454 ENSRNOT00000054565 3 1 1 60 4 134985219 134985237 GGCTATAACCAGCACAGAC 58 134985259 134985279 TGCTCAAAGAGATACTCACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027387.1 ENSRNOG00000041434 ENSRNOT00000063187 2 1 1 69 17 27700538 27700557 AGATCTCTGTGAGTTCGAGG 59 27700589 27700607 TTTCTGTGTAGCCTTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028336.1 ENSRNOG00000057298 ENSRNOT00000077094 2 1 1 60 17 65937656 65937676 ACCATAGCTGTCTTCAGACAC 60 65937616 65937636 AAGCTGACTTCTGTAATGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033465.1 ENSRNOG00000055484 ENSRNOT00000084837 2 1 1 114 11 22852251 22852272 GTATTACCTCAACCAGGGC 58 22852347 22852368 TCTTGAGTATTTGTCATCTGGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059499 ENSRNOT00000081274 2 1 1 62 17 88628607 88628625 GTGTCAGTATGTGGCAGAG 58 88628563 88628583 TGTTCATAGGTCAGAACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042669.1 ENSRNOG00000031076 ENSRNOT00000047925 3 1 1 61 19 2611359 2611377 AAAGTACCACTTGCTCCTG 57 2611316 2611336 AAATTCTCCACCAGATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 1 1 1 60 10 23480885 23480905 GCGAATATTCTCGCTGTTCTG 60 23480845 23480866 ACTATAGCGAATGTTTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057421.1 ENSRNOG00000047216 ENSRNOT00000072394 2 1 1 60 7 70287318 70287337 TGGCTGGATTCAAGTAATCC 58 70287356 70287378 GTAATCAAGAATAGGCCTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021625.1 ENSRNOG00000057144 ENSRNOT00000089675 2 1 1 69 13 82121325 82121343 TCTTTCTCCACATCCTCGC 60 82121272 82121290 CTCACACCAGTCAGAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047089.1 ENSRNOG00000055063 ENSRNOT00000082188 1 1 1 80 5 18964137 18964155 CCAGTGTACCTCTTTGGCT 59 18964195 18964261 TCTAAGACTCTGACCAAGTTGTC 60 Novel Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 2 1 1 60 1 134922193 134922214 ATCTGAAACAACCTTAACAGCC 59 134922235 134922253 ACGTTTGTGTCTCTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 3 1 1 60 1 134922245 134922263 CACAAACGTGATGTCAGGA 58 134922286 134922305 TTTCCAGTGATGCGTATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054564 ENSRNOT00000084102 3 1 1 62 4 101074718 101074737 TGAATTCTGCTCCTATGCAC 58 101074675 101074693 TGTCTCCTCAGTCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063703.1 ENSRNOG00000046279 ENSRNOT00000075437 2 1 1 60 6 42778260 42778278 AGAAGGGTACATCGAACGG 59 42778300 42778320 AATTTCAAACTGCCTGTGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000048017 ENSRNOT00000036375 1 1 1 80 7 18793033 18793251 CTGGATTTCAGACTCCAAAGG 59 18792973 18792993 CTGATTCTTTCTCCTGGAGTC 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000060059 ENSRNOT00000089500 1 1 1 60 10 65833127 65833147 GTCCTGGCTACAAATAACAGC 59 65833087 65833105 AACCCATGTAGGGAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056239 ENSRNOT00000088700 2 1 1 60 4 33537182 33537200 TGATTCAGACTGTCCACCT 58 33537140 33537161 TATGTATGGGATGTTGAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047750.2 ENSRNOG00000059308 ENSRNOT00000086284 2 1 1 61 5 45733895 45733913 CACCAACAATGGAGGAGTG 59 45733938 45733958 ATAGGTGACAGCAAATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042789.1 ENSRNOG00000023805 ENSRNOT00000030597 1 1 1 60 19 8943823 8943841 GCCTGAAGTGTTACTGCTG 59 8943781 8943800 AGTTTCTCAATCAGGTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036642.1 ENSRNOG00000050192 ENSRNOT00000071941 1 1 1 60 12 51674416 51674439 AGTAGATGGATTGTGTAGATGAGG 60 51674379 51674399 GCACTTGATAAGTGGCTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098022.1 ENSRNOG00000048170 ENSRNOT00000074095 3 1 1 91 7 20075979 20075998 CAAGAGGAAAGATGGAGCTG 58 20076082 20076100 ATGCTTTATCCTTTCCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000056357 ENSRNOT00000079611 2 1 1 61 10 25515995 25516013 ATCATCCATTGCCCTGGAC 60 25515952 25515970 GCCACAGATTATCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000059318 ENSRNOT00000085365 2 1 1 62 8 22715691 22715709 GAGGAGCCACCTCTAAAGG 59 22715735 22715753 AGAAGCTGAGTTGAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060043 ENSRNOT00000083141 2 1 1 60 8 130537181 130537201 TGCTTAGTCAAGAGGATAACC 57 130537141 130537161 TATATCCTTGACCGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066529.2 ENSRNOG00000053989 ENSRNOT00000090330 1 1 1 62 9 10840914 10840932 AAGAAGCTCCCTGTTTGCA 60 10840870 10840888 AAGAAGAGATGGGAGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055105 ENSRNOT00000087996 1 1 1 66 10 74742650 74742668 TTATCCATTGCACTCCGGA 59 74742698 74742716 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042323.1 ENSRNOG00000005681 ENSRNOT00000007487 1 1 1 60 X 152781259 152781277 ATCGCCTGTTCTGTAACCA 59 152781217 152781235 GAATGGACTGGATCTGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053138 ENSRNOT00000086632 3 1 1 60 9 77733386 77733404 GGCAGTCCTTTGTTCATCC 59 77733344 77733364 AAGCATAACACAGCTTTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071742.1 ENSRNOG00000047621 ENSRNOT00000073760 1 1 1 60 8 128719693 128719711 TGTCCTGGAACTCACTCTG 59 128719732 128719753 CAGAGGCAGGTAAATTTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000064626 1 1 2 118 10 87819467 87819485 TGACCATCTACTGCAGCAC 60 87820033 87820051 TTCACAGCAAGTTGGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 3 1 1 83 2 131957234 131957254 GGGTCAGTGCCATTTATAAGC 60 131957170 131957189 CAAATGCGTGAAGCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 1 1 1 113 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624965 85624983 CTATGTCTTTGTGGCCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037536.1 ENSRNOG00000056810 ENSRNOT00000085588 3 1 1 81 X 23246345 23246363 TGTTATTGGCATGCCAGTG 59 23246280 23246303 GCAAACATTCAGAATGTTTCGG 60 Novel Rattus norvegicus 81 AABR07071223.1 ENSRNOG00000037129 ENSRNOT00000056005 1 1 1 60 8 105526639 105526657 CTCTGTGTAGCCTTGACTG 58 105526681 105526699 CTTAGTTCAAAGCCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052830 ENSRNOT00000088511 3 1 1 60 8 118440373 118440392 GAGTTGGAATAGGAGCTTGC 59 118440332 118440350 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0892.1 ENSRNOG00000053448 ENSRNOT00000077603 1 1 1 80 10 89260452 89260471 TCACTTGAAACTCATTCCCA 57 89260514 89280797 CAGCACAGATGAGACTACC 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045006 ENSRNOT00000070273 3 1 1 60 13 79439201 79439222 TGACCTGATCTAGTCTGATCTC 58 79439162 79439182 CATTCAAGTATTAACCAGGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.4 ENSRNOG00000059412 ENSRNOT00000082045 3 1 1 60 X 123807334 123807352 GGACACTGAGAAGGAACGA 59 123807376 123807394 CTCCTGGATCTTCTGGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053734 ENSRNOT00000086034 3 1 1 60 8 75469110 75469131 GGTAGAACACTTACTGTACAGC 59 75469151 75469170 TTGCTTTGTGATGAGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002384.2 ENSRNOG00000046037 ENSRNOT00000073243 3 1 1 83 1 72360923 72360944 AAGACTGACAGAAACCTTCAG 58 72360860 72360880 ATTTGGGAGTTGTAGTATGGG 58 Novel Rattus norvegicus 81 AABR07054547.1 ENSRNOG00000008136 ENSRNOT00000010732 3 1 1 95 3 159452573 159452599 CTGTCACCCAATGTTCTTAAGAG 60 159452500 159452519 ATCTTCTGGGCATTGGTCTC 60 Novel Rattus norvegicus 81 AABR07030603.2 ENSRNOG00000052459 ENSRNOT00000085552 3 1 1 72 10 95431204 95431223 GCATAAAGCTTGTCTCACCC 59 95431151 95431172 GCATTCTCTTACTATACAGCGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069524.1 ENSRNOG00000049314 ENSRNOT00000073310 1 1 1 80 8 26659498 26659520 AGATTTCACCTCACATGCG 58 26659436 26659455 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07056013.1 ENSRNOG00000009072 ENSRNOT00000044978 3 1 1 60 7 18280169 18280190 CTGTCTAGTCTATGATGAAGCC 58 18280208 18280229 AGCAATCTCTTGTTGAATCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052082 ENSRNOT00000081792 1 1 1 60 8 95064692 95064711 GTTATCAGTAGGTGGCAGAG 58 95064651 95064672 CCATAGTTCAGAACACTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057842 ENSRNOT00000089663 1 1 1 60 8 18517585 18517606 TGGCTTTATAGAATACAGGAGG 57 18517624 18517645 GAATCACAACTACTCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053088 ENSRNOT00000089896 1 1 1 81 8 48799220 48799238 GAGACAGAACTGCCTCCTG 60 48799157 48799175 GTGTCATTCTTGTGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044880 ENSRNOT00000070147 3 1 1 60 8 64903644 64903662 ATTTGGGAAGTTGAGCAGG 58 64903602 64903621 ATTCACATCTTGTCTTCCGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052416 ENSRNOT00000081352 1 1 1 60 8 50872139 50872157 ACATGTGTAGGTGGCAGAG 59 50872179 50872199 TCAACTGTCCACAGAAATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061858 ENSRNOT00000083567 3 1 1 60 8 85317347 85317366 CAGTAGGTGACAGAAAGGAG 57 85317306 85317326 GATATTCACCGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000055465 ENSRNOT00000090176 2 1 1 60 8 128808851 128808870 GTTAGAGCTTGGAGTTGAGG 58 128808891 128808911 GCACACTACCTACACTTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052664.1 ENSRNOG00000053741 ENSRNOT00000091115 1 1 1 80 3 68305198 68305220 AGATTTCACCTCACATGCG 58 68305136 68305155 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA20 ENSRNOG00000056888 ENSRNOT00000086106 3 1 1 61 8 76903405 76903429 GTGATAAGAGTGGTTATACACATGG 60 76903445 76903466 TCCATCTCCATGTATAATGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070207.1 ENSRNOG00000056320 ENSRNOT00000091086 1 1 1 80 8 57847542 57847564 TAAACCAATTTCTGGACACCTG 59 57861156 57861174 TTGAGCTCAGAGGCTAGTC 59 Novel Rattus norvegicus 81 AABR07068975.1 ENSRNOG00000053294 ENSRNOT00000071404 2 1 1 60 8 4118280 4118299 CCTTCTAAGATTGGTGTCCC 58 4118320 4118340 TCAGAATAGTCTTTGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026359.1 ENSRNOG00000060898 ENSRNOT00000088219 2 1 1 80 16 73758563 73759369 TCACAATTACTGCAGAAACCC 59 73759410 73759429 AACTCCGTGGTATACTTCCC 59 Novel Rattus norvegicus 81 AABR07052557.2 ENSRNOG00000057935 ENSRNOT00000078456 3 1 1 60 3 61623277 61623297 GGCTGTCGTAAACTCATTACC 59 61623237 61623257 CAAGGTGTCATAAAGCCATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000060240 ENSRNOT00000091104 1 1 1 60 3 121317844 121317865 GAGCTTGTTAGACTCTTAACCA 58 121317885 121317904 TGGACGACATCAATCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA64 ENSRNOG00000060026 ENSRNOT00000077474 1 1 1 60 3 83631634 83631653 TGTGACTTTCGTACTGGGAG 60 83631593 83631613 TGAAGCCAATCCAAAGTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132741.1 ENSRNOG00000059369 ENSRNOT00000090188 2 1 1 80 3 160679302 160679321 TGAAGTCCATCTTCTTCAGC 58 160679363 160679610 TTGTCCCACCATAGATTCCT 58 Novel Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 1 1 1 60 3 153521746 153521767 CAATACAGTACAGTGCAGTACC 59 153521786 153521806 GTACTGCACTGTACTGTATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014690.1 ENSRNOG00000054903 ENSRNOT00000079570 3 1 1 81 14 26654440 26654461 ATCAGCTACATGTAGATGATCC 57 26654500 26655638 CAGTCTGAGGAGATGTATAGGA 58 Novel Rattus norvegicus 81 AABR07031247.1 ENSRNOG00000052385 ENSRNOT00000086877 1 1 1 80 18 5585536 5585558 CTACACCTTCCTTCAAGAAACTG 59 5585597 5585734 TTTAAAGATGCTGCCTGTCC 59 Novel Rattus norvegicus 81 AABR07031247.1 ENSRNOG00000052385 ENSRNOT00000086877 2 1 1 81 18 5585536 5585558 CTACACCTTCCTTCAAGAAACTG 59 5585597 5585735 CTTTAAAGATGCTGCCTGTCC 60 Novel Rattus norvegicus 81 AABR07031251.1 ENSRNOG00000053296 ENSRNOT00000090524 2 1 1 67 18 5839158 5839176 AGTAGAGACACTGTGGCTG 59 5839004 5839127 GGTTGTTCTGAAGACTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014855.1 ENSRNOG00000054855 ENSRNOT00000079827 1 1 1 60 14 33960755 33960773 AGAAACAGTCCTCCTTCCT 58 33960713 33960731 AAATCTGTGCTTGCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000173.1 ENSRNOG00000059137 ENSRNOT00000082859 2 1 1 80 1 2762086 2762104 GTTCCGAGCCGAAATTCTG 59 2751376 2762045 TTCTGGGAGATTCTTCATCCTC 59 Novel Rattus norvegicus 81 AABR07015040.1 ENSRNOG00000056778 ENSRNOT00000084119 2 1 1 60 14 46286648 46286667 GACTCACAAACAACCGACAG 60 46286795 46286814 CTGATCTTCAGAAACGACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060595.1 ENSRNOG00000054078 ENSRNOT00000088866 1 1 1 70 4 83332366 83332384 CTCACTGAGGAGTGGTCTG 59 83380032 83380050 TTTAACTGGTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000081555 2 1 2 101 4 86699588 86737137 GCTTCTCCCGATCTAAGTC 57 86699505 86699523 TGTCCTGGACAATTGTTGG 58 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 3 1 1 91 1 12403208 12409367 AGAGACTTCGGTGATCAGAC 59 12409418 12409439 CTTACTCTTGCATAGTTCACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047194.1 ENSRNOG00000058576 ENSRNOT00000081862 3 1 1 80 5 23391928 23391946 TCGAAACAGTCTGTTGCAG 58 23391990 23392611 ATGACCAGACGTCTTTGAC 58 Novel Rattus norvegicus 81 AC128394.2 ENSRNOG00000056019 ENSRNOT00000085926 1 1 1 111 1 12757921 12757940 TAGAAGGAAAGACGGTGCTG 60 12683096 12757847 CTTCACGACCTTCCCTCTC 60 Novel Rattus norvegicus 81 AABR07047256.1 ENSRNOG00000059459 ENSRNOT00000079809 2 1 1 80 5 25339604 25340938 CAGTACAGCCAAGATCCCA 59 25340980 25341000 GGTACTAACTTCTGTCATGCC 59 Novel Rattus norvegicus 81 AABR07000451.1 ENSRNOG00000053331 ENSRNOT00000084609 2 1 1 112 1 13351264 13351283 GAAGCAGAAAGATGATGCCA 59 13354109 13354128 TCTCTTTCTCCCTGATTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 1 1 1 60 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516480 71516499 TATACCTGTTTCCACACGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 2 1 1 61 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516481 71516500 CTATACCTGTTTCCACACGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 3 1 1 61 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516480 71516500 CTATACCTGTTTCCACACGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 3 2 2 81 10 67111281 67127724 CTCTGGAACTTACAGAATGGA 57 67111220 67111238 GAGAAGAGCTGGTCTTCTG 57 Novel Rattus norvegicus 81 AABR07061155.1 ENSRNOG00000058418 ENSRNOT00000083209 3 1 1 83 4 107202355 107209827 GTAGGAAGATCTTCAAAGCCC 59 107209871 107209890 CAGACAGTACCTTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07030235.1 ENSRNOG00000053740 ENSRNOT00000087117 3 1 1 83 10 77080669 77080687 CATGGATTTCCGAAGCTGG 59 77080734 77081945 GCTTCCTTCCACATCTCCA 59 Novel Rattus norvegicus 81 AABR07047840.1 ENSRNOG00000055803 ENSRNOT00000091267 2 1 1 80 5 49959596 49981649 GATCACTGAGGATTCCTAGGA 58 49981691 49981709 GTTTCAGCGTCTCCAACTC 59 Novel Rattus norvegicus 81 AABR07030257.1 ENSRNOG00000052162 ENSRNOT00000077728 3 1 1 91 10 78220602 78223572 GGACTACTCTGCTGGATGG 59 78223626 78223645 TGTTCATCACAGGGCTACAG 60 Novel Rattus norvegicus 81 LOC102550026 ENSRNOG00000058323 ENSRNOT00000080713 1 1 1 80 5 51150927 51183619 GAGCCCTTGAAAGAGATGAC 58 51150866 51150885 GGAGAAACAGTGTTCCTTCC 59 Novel Rattus norvegicus 81 AABR07061333.2 ENSRNOG00000055980 ENSRNOT00000082483 2 1 1 88 4 116858262 116862107 TGTTTCAGCTGTTCCATGAC 59 116862156 116862176 ACTTTGAATGCTTGGGAAGAG 59 Novel Rattus norvegicus 81 AABR07015966.1 ENSRNOG00000055092 ENSRNOT00000086499 3 1 1 82 14 88184245 88184269 CTGTTCTAATTCCACACTTACTCTG 60 88184307 88185540 AGTTTCTGAGATCCCTTCTGC 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 1 1 1 92 14 93085197 93085215 TAGCTGCCACATGTACTGG 60 93085268 93086734 TTAATGTTCAGGTTCCATGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 3 1 1 101 14 93085188 93085206 ACATCTCTGTAGCTGCCAC 60 93085268 93086734 TTAATGTTCAGGTTCCATGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071851.2 ENSRNOG00000053999 ENSRNOT00000078878 2 1 1 80 1 21405970 21434787 GTGGATCTTTATAAAGGCAGGA 58 21405911 21405930 TGTGAGTTAACCCTTTCTGG 58 Novel Rattus norvegicus 81 AABR07061384.1 ENSRNOG00000058483 ENSRNOT00000091313 3 1 1 81 4 120994864 120994885 CAGAACAAAGACTCATGTAGGA 58 120993721 120994822 ATGCAATGAGTGAAGCTGG 59 Novel Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 3 1 1 71 5 85124148 85137775 TGATTCTAGCTGAACCGGG 59 85137807 85137828 AGGATCACCACTCATCATAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061465.1 ENSRNOG00000056263 ENSRNOT00000081330 2 1 1 93 4 126984174 126985784 GAACCCATCAGTTTCAGCAG 59 126985840 126985858 ATCAGTCCAGAACCATCCG 59 Novel Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000082506 1 1 2 82 10 93203369 93204402 CAAACTCTTCACAGGCCAG 59 93204445 93204466 CGTTAGGATTGAGTTTAATGCC 58 Novel Rattus norvegicus 81 AABR07048966.1 ENSRNOG00000059515 ENSRNOT00000088835 3 1 1 80 5 98793893 98812087 AAGTACAGGATGTCGGAACC 60 98812129 98812148 CTTCAGAAGTCCCAAATGGG 59 Novel Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 1 1 1 60 4 146294992 146296369 ACCCATGAAGGAAGGACTG 59 146294950 146294969 ACTGAATTCAGCAAGCAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049002.1 ENSRNOG00000060976 ENSRNOT00000080603 2 1 1 80 5 99320051 99347211 CTTCATTAATAAGGGCACTTCAGG 60 99319994 99320012 CACTGATCACCTCCAACCT 59 Novel Rattus norvegicus 81 AABR07049033.1 ENSRNOG00000055709 ENSRNOT00000089350 3 1 1 80 5 100777502 100812142 GGTCCATAAGCTCATCAGCT 60 100812185 100812203 TCAGTGTCTTCTTCACGCA 59 Novel Rattus norvegicus 81 AABR07016722.2 ENSRNOG00000060106 ENSRNOT00000080488 2 1 1 81 14 112606342 112606361 GCAAGAGCATATGACAGGAG 59 112606405 112607686 AATGGGATGCCTCATTCCT 59 Novel Rattus norvegicus 81 AABR07049033.2 ENSRNOG00000057129 ENSRNOT00000086258 1 1 1 60 5 100854671 100854689 CTGCTATGACATGTCAGCC 58 100852800 100852819 CAATGGACTTCTCAAGGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049079.1 ENSRNOG00000053914 ENSRNOT00000077312 1 1 1 80 5 103669495 103669515 GCTAATTGACTGCTAGCTGAG 59 103669554 103684804 TTGAAACAGAGTCATCATCTCC 58 Novel Rattus norvegicus 81 AABR07030660.1 ENSRNOG00000053434 ENSRNOT00000080349 2 1 1 82 10 98177819 98177837 CGGAGATGATTGAACTGCA 58 98177882 98188426 GGATCAGAGACACTTTCCTG 58 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000086379 2 1 2 82 10 99706396 99706414 AATCTGTGAACACAAGGCC 58 99691230 99706352 TGGAAATACCTTGCAGATGTG 59 Novel Rattus norvegicus 81 AABR07049350.1 ENSRNOG00000060443 ENSRNOT00000082950 3 1 1 116 5 118035708 118035726 TGACCACATCCACTACAGC 59 118037219 118037237 CAGTGAGGAACCAGCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.2 ENSRNOG00000053967 ENSRNOT00000085994 3 1 1 63 10 102861673 102861692 CTTGTGTCATCACTTGCCAC 60 102863824 102863843 CATGGCGGATGATATCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC121719.1 ENSRNOG00000057875 ENSRNOT00000079525 3 1 1 60 5 118820856 118820874 GTGCCTCTCAAGATCTACC 57 118851975 118851993 CATATCTCACCTTGCCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017189.1 ENSRNOG00000058519 ENSRNOT00000089717 1 1 1 82 15 16637949 16638841 GTCTACAGTGATGCTTTCCTG 59 16637887 16637907 GGTGAACATCATCTTCCTCTG 59 Novel Rattus norvegicus 81 AABR07017227.1 ENSRNOG00000056328 ENSRNOT00000081094 3 1 1 91 15 18256999 18257017 AGTAAGCCTTGAGAGGAGG 58 18257072 18257311 GAGGCATGATTGATCCTGC 59 Novel Rattus norvegicus 81 AABR07062298.2 ENSRNOG00000052108 ENSRNOT00000083020 1 1 1 80 4 167558407 167558429 GGTAATACCTACTCAAGCTTCCT 60 167558465 167560781 TTCTTATCTAGTAAGTGACCGCC 60 Novel Rattus norvegicus 81 AABR07001358.1 ENSRNOG00000053056 ENSRNOT00000081556 2 1 1 97 1 40255592 40255616 GCTCTGATCCATTTAGATATGTCTC 59 40232414 40255539 CAGCTTCTTGATGAGTTACGG 59 Novel Rattus norvegicus 81 LOC102548428 ENSRNOG00000054173 ENSRNOT00000079775 3 1 1 81 15 23984837 23985078 GGACTCTAATGGCAATATTGC 57 23984776 23984797 ACTAGAATTCCAAGATGTCCTC 57 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 3 3 3 83 20 56198701 56199211 CTGGTTATGCAAATCAGAACCT 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07049695.2 ENSRNOG00000051636 ENSRNOT00000089245 2 1 1 83 5 133710458 133710477 CTAGAGGAGAGTGTGATCCG 59 133710522 133711051 ACTTGTTTCTGGGTCCTCTC 59 Novel Rattus norvegicus 81 AABR07001455.1 ENSRNOG00000053507 ENSRNOT00000088141 1 1 1 80 1 45621354 45621372 GTGCACATTTGGTCAGCTC 60 45621414 45622040 ACTCACGAAATCATGAGTCCT 59 Novel Rattus norvegicus 81 AABR07062513.2 ENSRNOG00000052942 ENSRNOT00000086702 2 1 1 81 4 180828669 180828688 AACTAGAGACCACAAGTGGA 58 180820130 180828626 GACAGAGAACTTCTGTGAGG 58 Novel Rattus norvegicus 81 AABR07049695.3 ENSRNOG00000052757 ENSRNOT00000077735 2 1 1 89 5 133717836 133720410 CCAGAGTCTATGTGTAGTTTCCA 60 133720454 133720477 GCTTCCTGGATTCTATATCTTCCT 60 Novel Rattus norvegicus 81 AABR07049760.2 ENSRNOG00000060378 ENSRNOT00000077862 1 1 1 132 5 136545171 136545189 TTCTGCTTCTCAGCTGGAC 60 136543609 136543627 TCACAGAAGAGGGAAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000086823 1 1 3 67 1 47534126 47534144 AGAGACCTCAGGAACACTG 58 47537476 47537494 TCCAATTTCTCCCACCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000086823 3 1 3 68 1 47534126 47534144 AGAGACCTCAGGAACACTG 58 47537477 47537495 TTCCAATTTCTCCCACCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.2 ENSRNOG00000061293 ENSRNOT00000089143 3 1 1 92 15 30883560 30883802 TTTGTCTGGATGTAATGTGGC 59 30883855 30883874 TATGAACACTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07017825.5 ENSRNOG00000060541 ENSRNOT00000089248 2 1 1 60 15 31497866 31497885 CCCTGGAGTGTTCATATGAG 58 31497994 31498015 GCTGGAAGATTACAGAATAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 2 1 1 102 6 10767024 10767042 ACTTCTTCCTCATCAGGGC 59 10765966 10766960 GAATACAGGAATTGCAAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049884.1 ENSRNOG00000054370 ENSRNOT00000084152 2 1 1 100 5 142429261 142429279 TTCCTGTGGCAGACATCTC 59 142429341 142433581 ATCATGCTGCTTCCTTTATCC 59 Novel Rattus norvegicus 81 AABR07001610.1 ENSRNOG00000055136 ENSRNOT00000082026 2 1 1 80 1 54224086 54287680 TTCAGCATCAAATACCTGAGG 58 54224026 54224045 TACGTGCAGGTGATTTAGAC 58 Novel Rattus norvegicus 81 AABR07018116.1 ENSRNOG00000054194 ENSRNOT00000081842 1 1 1 80 15 40684509 40684529 AGAAACCAAAGCTCAAGAACC 59 40681578 40684472 GCTGGATTTCTCTGTACATAAGAC 59 Novel Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 3 1 1 89 18 49224777 49227203 TGGATTCCTTGCTAAGCCA 59 49224706 49224724 GTTTGTCAGCTGTCAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 1 1 1 80 15 41619171 41619190 CCATGTTGTAAAGTGGGAGG 59 41617404 41619130 GTATTGTTCCTTCTGGGAGAG 58 Novel Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 3 1 1 80 15 41619169 41619189 CATGTTGTAAAGTGGGAGGTG 59 41617403 41619130 TGTATTGTTCCTTCTGGGAGAG 60 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 3 1 2 81 18 50434573 50435149 TGTTTGCCTAATGCTCCTC 58 50434510 50434528 GTGGAGTCTCAGGAATGTC 57 Novel Rattus norvegicus 81 AC132635.1 ENSRNOG00000061631 ENSRNOT00000089689 2 1 1 88 15 43742817 43742835 GTTCCCGAATGCTTGACTC 59 43742884 43746855 GGTCACATACTTTGATCTCCTC 58 Novel Rattus norvegicus 81 AABR07001764.1 ENSRNOG00000058989 ENSRNOT00000086654 2 1 1 89 1 56745996 56746014 AGATGTTGAATGCTGGCAC 59 56732610 56745945 CCAGAGCTTCTAGAAGTTGGA 59 Novel Rattus norvegicus 81 AABR07001780.1 ENSRNOG00000056729 ENSRNOT00000087541 1 1 1 87 1 57667193 57667212 CTAATATCGCCTCCTTGGCA 60 57667262 57667376 TCTTGGGTTTCCAGCTCTG 60 Novel Rattus norvegicus 81 AC118858.2 ENSRNOG00000060555 ENSRNOT00000088774 1 1 1 80 18 51713466 51716659 CCATGACAGAGAAGTCTTAAAGAG 59 51716697 51716716 TACCTTGGTTGACTTTGGTG 58 Novel Rattus norvegicus 81 AABR07050265.1 ENSRNOG00000052537 ENSRNOT00000087936 1 1 1 60 5 158641392 158641410 GCAACTTCAAGACAGACGG 59 158641350 158641368 GTTATGCCACTTACCCGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063636.1 ENSRNOG00000052000 ENSRNOT00000078407 2 1 1 85 6 38339526 38339984 GTTTATCAGGTAGCCACAAGAG 59 38339462 38339480 ACTGAGTTGGCTAGGAAGC 59 Novel Rattus norvegicus 81 AABR07018342.1 ENSRNOG00000060189 ENSRNOT00000086746 2 1 1 69 15 53092981 53092999 TATGCAATGTGTAGGGCTG 58 53095992 53096010 AGATAGCCATGGCTACTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018390.1 ENSRNOG00000060737 ENSRNOT00000078552 1 1 1 87 15 55406333 55406351 CAACTGGACCCAGAATGAG 58 55405124 55406285 CCTTACTGTGTTGATTTCTTCC 57 Novel Rattus norvegicus 81 AABR07050466.1 ENSRNOG00000059002 ENSRNOT00000086073 2 1 1 60 5 166262794 166262812 AAGCCTACCGAAGACACAG 59 166259303 166259322 GAATTGGGAAACCTCCTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002677.2 ENSRNOG00000060041 ENSRNOT00000081418 3 1 1 108 1 80378583 80378601 ATCCCTGGCAGAAAGACTG 59 80378673 80382575 CAGGATCTCCAGCACTGAC 60 Novel Rattus norvegicus 81 AABR07063804.1 ENSRNOG00000054273 ENSRNOT00000077239 3 1 1 104 6 49617417 49617436 GCTACCTTTGTCTCCATGGA 60 49617503 49617900 TGTAGTTCATCTGGCCCTG 59 Novel Rattus norvegicus 81 AABR07002805.1 ENSRNOG00000056831 ENSRNOT00000078361 3 1 1 113 1 85574476 85574494 AAGTCCATCTGTCCTACCC 58 85567967 85567985 ATGGAAGAGGACCAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 3 1 1 81 3 3955902 3956355 ACCAGGACTGAATGCTGAG 59 3956400 3956418 TCCTGATTGGACTCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019088.1 ENSRNOG00000057291 ENSRNOT00000084024 2 1 1 82 15 87558243 87558261 TAGTGCTGTCACTAGCACC 59 87558307 87561108 TCTTCAGATCAAGGCTCGC 60 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 3 2 2 90 6 64609027 64609045 GTTTGCAGAGGTGACAGTG 59 64593182 64608973 TGTCTTCCAGTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07002898.1 ENSRNOG00000054776 ENSRNOT00000084059 1 1 1 78 1 88612296 88612314 GAGACGGAAGTGGTGAGAG 60 88612999 88613017 GAGGACAAGAGGGAGAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AC115341.2 ENSRNOG00000059168 ENSRNOT00000081056 1 1 1 95 3 9109354 9109372 TACGGGAAGATTGGTGGAG 59 9115109 9115127 AGTTCACAGGATTCCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 3 1 1 64 18 79312133 79312151 GGATGGATGGGTGTCTCAG 60 79311562 79311585 GTCAAATCCTATTCTTGTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072853.2 ENSRNOG00000056129 ENSRNOT00000078431 2 1 1 113 3 9945850 9945868 CTGGATCGTCTCAACACGT 60 9942984 9945773 ACCATTGCATTTGCACCTG 60 Novel Rattus norvegicus 81 AABR07032758.1 ENSRNOG00000052976 ENSRNOT00000089151 3 1 1 83 18 80197365 80200996 AGCCCATGATTATCTGTAAGAG 58 80197303 80197321 GATGTCTCCCTGACATCTG 57 Novel Rattus norvegicus 81 AABR07051438.1 ENSRNOG00000060208 ENSRNOT00000082735 2 1 1 80 3 11277975 11277995 GTTAGGACCTTCCCTATGCTC 60 11278035 11278803 GTCAGGATGTGTCTTGAAGGA 60 Novel Rattus norvegicus 81 AABR07051485.1 ENSRNOG00000059802 ENSRNOT00000080186 2 1 1 81 3 13825545 13837679 CAAGTCTAGTTGCAGCATGAC 60 13825484 13825502 TAGAAAGTTCGCCTCCTGC 60 Novel Rattus norvegicus 81 AABR07019437.3 ENSRNOG00000053672 ENSRNOT00000086016 3 1 1 81 15 105486018 105486038 AACTCTACACGATCCTTTCCT 59 105469188 105485975 CCCATGTTGAAAGGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033274.1 ENSRNOG00000059180 ENSRNOT00000080572 3 1 1 151 11 14773399 14773417 AACATAATCTGCCCTCCCG 60 14772796 14773284 AAGGAAGACAAGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07033301.1 ENSRNOG00000061487 ENSRNOT00000078592 1 1 1 60 11 16670859 16670878 GGATGGATACATGGATGGTG 58 16669870 16669888 GGAAAGTGCTTCGAGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 3 1 1 83 13 35886854 35887289 AAAGACATCACCAGCAGGT 59 35886789 35886807 CTTTCCATTCTGCACGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020703.1 ENSRNOG00000057145 ENSRNOT00000086960 1 1 1 80 13 36027697 36027715 ACAGTGAGCAGACACAGAG 59 36027759 36029655 GCCCTGGTTAAACTCTGTG 59 Novel Rattus norvegicus 81 AABR07065049.2 ENSRNOG00000053831 ENSRNOT00000084251 1 1 1 60 6 105833823 105833842 TCGAAGGATTAGAACCAGCA 59 105823696 105823714 CTCCTCCTGGTGTAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033570.1 ENSRNOG00000056730 ENSRNOT00000086624 3 1 1 81 11 28097668 28097686 GGTTGCATGTGAATCTCCA 58 28097728 28160355 GCTCCTTTATTCCCTAGTTGTC 59 Novel Rattus norvegicus 81 AABR07073245.1 ENSRNOG00000053035 ENSRNOT00000077192 1 1 1 80 6 108930422 108930444 CCTGAGAAATAGGAAGCAAACTG 60 108930484 108931456 TTCTTCCTCCAGTGGAGGA 60 Novel Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 2 1 1 67 13 41853431 41853449 GAGGAGGAAGAGGGAAGAG 58 41853479 41860701 ACCCTGAACATTAGTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003349.1 ENSRNOG00000055821 ENSRNOT00000086165 1 1 1 64 1 106862816 106862834 CAAACAACAGTCCCTGGGA 60 106861356 106862789 TCAGCTCCCTTGTAAATGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065190.1 ENSRNOG00000054202 ENSRNOT00000091539 1 1 1 61 6 114631026 114631044 CAGCATATTCCATGCCCTG 59 114599048 114599070 GTCATGAGTATATTCTGGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052327.1 ENSRNOG00000054061 ENSRNOT00000078922 3 1 1 96 3 47689079 47689098 TTAGCTGCTCTTAGCAAGCT 60 47689156 47690627 CTTCTTGATCTCACGCTGAC 59 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000084814 1 1 2 80 11 44736562 44736583 ATGTCATTGAACTTCAGAGGGA 60 44668911 44736521 CATTGTTATCGGCAGCTGG 59 Novel Rattus norvegicus 81 AABR07052452.1 ENSRNOG00000059803 ENSRNOT00000078191 3 1 1 82 3 54949322 54949341 AGACAGGGATCCTTACACTG 59 54948369 54949278 AATCTGGAGTCGGAACACTC 60 Novel Rattus norvegicus 81 AABR07052504.1 ENSRNOG00000054287 ENSRNOT00000085218 2 1 1 87 3 58301891 58301909 GTGTCAGCTGAAGCAATGG 60 58301212 58301233 ACGCTTTGGTAGTTATTACCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052504.1 ENSRNOG00000054287 ENSRNOT00000085218 3 1 1 88 3 58301891 58301909 GTGTCAGCTGAAGCAATGG 60 58301211 58301232 CACGCTTTGGTAGTTATTACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052521.1 ENSRNOG00000052533 ENSRNOT00000088745 2 1 1 85 3 59272199 59272217 CCTTGTGAGGAGAGTGGAG 59 59268830 59272152 GGGTACTTGACCTGAATTGAG 59 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000079357 3 1 2 86 1 118050497 118050516 AAAGATGCTGCTATGGTCAG 58 118050563 118076989 CACAGTGTAACCTTTATGGGA 58 Novel Rattus norvegicus 81 AABR07052541.1 ENSRNOG00000056244 ENSRNOT00000084655 3 1 1 94 3 60681735 60683038 TTTGGCTGCCAGTATTTGC 59 60683095 60683114 ACTTGTCCAGTAACTACGCT 59 Novel Rattus norvegicus 81 AABR07021610.1 ENSRNOG00000060416 ENSRNOT00000088845 3 1 1 81 13 81327797 81327817 GTCCTCATTGAAAGCATGACC 60 81327854 81330028 CATATGAGGTAGCAGAATGATACTG 59 Novel Rattus norvegicus 81 AABR07065406.2 ENSRNOG00000060830 ENSRNOT00000082112 1 1 1 97 6 125904609 125910922 TCTACTTCAGGCAAAGTGG 57 125904530 125904548 AAAGAACTTGCTCTGAGGG 57 Novel Rattus norvegicus 81 AABR07034464.1 ENSRNOG00000054633 ENSRNOT00000087385 3 1 1 60 11 72774790 72774811 GTATAAGCACATCAAGGAAGCA 59 72774317 72774335 GGAGATGCCTTCTGTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC133316.3 ENSRNOG00000061032 ENSRNOT00000083671 3 1 1 74 6 127276978 127282051 GGCATTCAGCAGGTAAAGAG 59 127276923 127276942 GGATCACCTCTTTGCTTTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052587.3 ENSRNOG00000053470 ENSRNOT00000078374 1 1 1 81 3 64154794 64154812 AAGACCCTCCCATCTTCAC 59 64154857 64155096 GAAACATGGTCCACAGCAG 59 Novel Rattus norvegicus 81 AABR07004085.1 ENSRNOG00000061295 ENSRNOT00000086546 1 1 1 83 1 124059667 124076269 TAAGAGCACAGCAATGGAG 58 124059602 124059620 TATTTACTGCCGCAGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.1 ENSRNOG00000059969 ENSRNOT00000086490 1 1 1 93 13 90171085 90171414 TCCATTCGACAATTTAGGAGTG 59 90171468 90171486 CTGGCTATTGCATGCATCC 60 Novel Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 1 1 1 60 11 83375963 83376987 ATATTTGTCCTTCTGCTCATCC 58 83375924 83375944 CTCACATTCTTGGCCTTAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065460.1 ENSRNOG00000053628 ENSRNOT00000079871 2 1 1 96 6 129372341 129378221 GTCCTTTGGATTCAGTCAGC 59 129378280 129378298 TGTGAGCTCTGACCAACAG 60 Novel Rattus norvegicus 81 AABR07065460.1 ENSRNOG00000053628 ENSRNOT00000079871 3 1 1 99 6 129372338 129378218 AGGGTCCTTTGGATTCAGTC 60 129378280 129378298 TGTGAGCTCTGACCAACAG 60 Novel Rattus norvegicus 81 AABR07004136.1 ENSRNOG00000061645 ENSRNOT00000082877 1 1 1 80 1 126694891 126694909 TGTCCACCTTGGATCTTCG 59 126692046 126694847 AGATTCAACCTGCTTGCCT 60 Novel Rattus norvegicus 81 AC115369.1 ENSRNOG00000056279 ENSRNOT00000082620 3 1 1 91 13 97920624 97920643 CAAGAAACATCTCGGATGGC 59 97920697 97921745 GTCTTTCTCAGGGACCTCC 59 Novel Rattus norvegicus 81 AC128915.1 ENSRNOG00000053197 ENSRNOT00000085177 2 1 1 147 13 98559815 98559833 TGTACAGAGTCCATGCCAG 59 98560443 98560461 GATGCCTTTCGCCTAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021972.1 ENSRNOG00000061273 ENSRNOT00000080652 1 1 1 118 13 101364814 101364832 ACACTTTGGTGCTCTCCTC 60 101364914 101371464 GAATGTTTCCTCCCAAGCG 59 Novel Rattus norvegicus 81 AABR07065593.1 ENSRNOG00000056013 ENSRNOT00000088117 2 1 1 82 6 136000341 136000359 CATAAGCACCAAGTGTCCA 58 136002098 136002116 TAAGGCTTCTGAGAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004232.2 ENSRNOG00000054097 ENSRNOT00000085407 1 1 1 80 1 131688255 131688274 CCAGTTCTCATCATCTGAGC 58 131688317 131688663 GTACAACAGCCCTCAACTG 59 Novel Rattus norvegicus 81 AABR07022061.1 ENSRNOG00000061342 ENSRNOT00000078247 1 1 1 80 13 105281910 105281929 TACCTTCGTCTTCTCACTGC 60 105281966 105282746 GGAAGTCCATGTACTTTATTTCTGG 60 Novel Rattus norvegicus 81 AABR07065815.2 ENSRNOG00000056934 ENSRNOT00000088727 3 1 1 81 6 142602030 142602130 TAGCTGCAGGTGTCTACTC 59 142601967 142601986 GACAACTTCACTGAAGCACC 60 Novel Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 2 1 1 61 3 90965825 90974803 GCTGTACCTATTTGTTTCTGGT 59 90965785 90965803 CAGTTCGAGGCATTTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC135766.1 ENSRNOG00000053578 ENSRNOT00000083972 1 1 1 105 12 7594375 7594395 TCTACCACTGAGCTAAATCCC 59 7589959 7594308 CTTCCAGTCCTGTTCTGGG 60 Novel Rattus norvegicus 81 AABR07024473.1 ENSRNOG00000051956 ENSRNOT00000082788 1 1 1 152 16 624614 624632 AAATCGAACCGTGGTTTGC 60 618595 618616 CCTACCTACATGTGGAAATGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065895.1 ENSRNOG00000055113 ENSRNOT00000085086 3 1 1 86 6 143879858 143879960 AGTCCCTGCATATGTCCTG 59 143879790 143879809 CAAGTCAGACTGAGGGTCTG 60 Novel Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 3 1 1 66 1 141675228 141679356 AAGAAGAAAGGCGGAAGGT 59 141679384 141679404 TCTTAACCTCTGAGCCATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065897.1 ENSRNOG00000055127 ENSRNOT00000077224 2 1 1 80 6 144056453 144062400 ATCAAGACAATGGGTCAGCA 60 144062442 144062461 GTTCTCTGAAGCACAGTGTG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000079908 3 1 2 61 1 141944112 141944130 CTCAGTGGCCTTGTAAACC 59 141944869 141944887 TTGTTGAGCATGAACACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035382.1 ENSRNOG00000059403 ENSRNOT00000092129 1 1 1 103 12 12112037 12112055 CTCTCCCAGACACTGACAG 59 12112122 12113400 GAATAGTTGCTCCTGGCAG 58 Novel Rattus norvegicus 81 AABR07035412.2 ENSRNOG00000054485 ENSRNOT00000080876 1 1 1 112 12 13803484 13803503 CTTCCTCATTCGCCTAAGAG 58 13802834 13802852 TTTCCATATCCCTGCACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053480.1 ENSRNOG00000057230 ENSRNOT00000087561 1 1 1 95 3 109388065 109400375 GGTGGAGTCCAGAGTACAC 59 109400432 109400452 GCTCATAACATGATCTGTGCT 59 Novel Rattus norvegicus 81 LOC685564 ENSRNOG00000055239 ENSRNOT00000084235 2 1 1 80 16 13002552 13002570 TGGACAAGAAACCTGAGGA 58 13002610 13005253 GTATGCATACTCAAGTAGGACTC 58 Novel Rattus norvegicus 81 AABR07035622.1 ENSRNOG00000051614 ENSRNOT00000082889 3 1 1 83 12 20543467 20543860 TCGTGGAATCTGGGAACTC 59 20543402 20543420 CCTGGACTCCAGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07066736.1 ENSRNOG00000053883 ENSRNOT00000077449 3 1 1 84 9 13737715 13739316 TCCGATATAAAGCTCACGGA 58 13737650 13737668 AGCAGAATGGAAGTCTGGG 59 Novel Rattus norvegicus 81 AABR07035722.1 ENSRNOG00000056359 ENSRNOT00000081965 1 1 1 80 12 21417547 21417568 GTGAGAAACGTGAGAGTATTGG 59 21417923 21418112 CATACACGATGTTATTATCCTTGGG 60 Novel Rattus norvegicus 81 AABR07053749.1 ENSRNOG00000053070 ENSRNOT00000088540 3 1 1 80 3 124004601 124004621 CTGATGGATATGGAAGTGGAC 58 124004658 124004801 CACTTCCATAATTTCCTCTAGGTC 59 Novel Rattus norvegicus 81 AABR07066861.1 ENSRNOG00000054665 ENSRNOT00000086266 1 1 1 91 9 19448020 19448038 GGAGACAGGTGGAGTTGAG 59 19447638 19447657 CAGCGATGTGACTAGTACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066861.1 ENSRNOG00000054665 ENSRNOT00000086266 2 1 1 92 9 19448020 19448038 GGAGACAGGTGGAGTTGAG 59 19447637 19447657 TCAGCGATGTGACTAGTACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053847.1 ENSRNOG00000055284 ENSRNOT00000086551 2 1 1 82 3 130435151 130455274 ATGGACAACAGATGGTGCA 60 130455319 130455338 ACTGTCCTTGTAAGCGTCTC 60 Novel Rattus norvegicus 81 AABR07053849.2 ENSRNOG00000057184 ENSRNOT00000084508 1 1 1 69 3 130642115 130642133 CATATTCCAGTGGTCAGCA 57 130640521 130642082 TCATGAGGTTTGTTGTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035835.1 ENSRNOG00000054158 ENSRNOT00000085474 2 1 1 80 12 24447291 24447312 GAAACCACTACAAACCATAGCA 59 24442995 24447252 CAGCTAGAGTCACCTTATCGA 59 Novel Rattus norvegicus 81 AABR07067183.1 ENSRNOG00000057182 ENSRNOT00000090092 3 1 1 90 9 33915121 33915142 AAGATCATTCTGTGAGCATCAG 59 33913720 33915076 CTGTTAGTTGCTCCTCTTAATATCC 59 Novel Rattus norvegicus 81 AABR07067247.1 ENSRNOG00000060115 ENSRNOT00000079936 2 1 1 82 9 36488717 36488735 AAAGGAGAGGAGGACAGAG 58 36492628 36492647 CTGAGACATTTCTCCAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036024.2 ENSRNOG00000060352 ENSRNOT00000091954 2 1 1 69 12 30948086 30948106 ATCCATGTCAAGGACATTCTC 58 30947666 30947684 AAGAGAAGCTTTGCTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054281.1 ENSRNOG00000059685 ENSRNOT00000087630 2 1 1 80 3 146214859 146214882 CACTCTTGACTTTACATCATGTCC 60 146211443 146214826 CAGAAGAAATAATCTCAGACAGGAG 59 Novel Rattus norvegicus 81 AABR07054292.1 ENSRNOG00000056483 ENSRNOT00000090611 2 1 1 83 3 146545837 146545855 AGACGTGCCTGTCTATTGG 60 146544741 146545791 GGCTGTAACAAGCATTCCTG 60 Novel Rattus norvegicus 81 AABR07005752.1 ENSRNOG00000057137 ENSRNOT00000080259 1 1 1 80 1 195865516 195866275 TCCATATCAGAGGAAAGAGATGG 59 195865458 195865480 GTTGTGAGATAATGTCTCATGCC 60 Novel Rattus norvegicus 81 AABR07067402.2 ENSRNOG00000058672 ENSRNOT00000084225 3 1 1 80 9 43255288 43255817 GTATTCACAAAGGCACTTGC 58 43255858 43255878 GTCTCTTCTGTCACTTGACAC 59 Novel Rattus norvegicus 81 AABR07067402.1 ENSRNOG00000052570 ENSRNOT00000085189 2 1 1 80 9 43290625 43292535 GAATGAAACCTATCTCCACCA 58 43292576 43292595 TCCAAGTAGTCATCTTGCTG 57 Novel Rattus norvegicus 81 AABR07036080.2 ENSRNOG00000054502 ENSRNOT00000087264 2 1 1 81 12 33700257 33700278 TGAAGATGAGAAGACCCAAGAC 60 33700320 33719519 CATGCTTTCCTGCAATCGA 59 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 2 1 1 64 3 149259514 149259532 TTCGCCTAGGACTACAGTG 59 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067469.1 ENSRNOG00000052973 ENSRNOT00000089604 1 1 1 82 9 47937263 47938284 AGCTCAAGCAATGATCCAG 58 47937199 47937217 CTTGTCGTCTTTGCTTCTG 57 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 3 1 1 98 12 38117928 38117946 TATGAGCAAGAACGAGCGA 59 38118006 38120634 TCAGTATTGTGCAACTGTGAC 59 Novel Rattus norvegicus 81 AABR07054482.1 ENSRNOG00000061183 ENSRNOT00000091823 1 1 1 110 3 155857430 155858957 CTTACCTGCTCAGATCAAGAG 58 155857340 155857358 TATCTTCCCAGTGAGTCCC 58 Novel Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 1 1 1 60 16 64923466 64924520 TTCACTGACTGTCAGCAGG 60 64923424 64923447 CAACAGGATTAGTAAATACCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005950.2 ENSRNOG00000061500 ENSRNOT00000086515 2 1 1 82 1 208521667 208521685 TGCCTAGAGCTTCATTCAC 57 208521729 208522446 CTCACAGCTGAATGAATTGTG 58 Novel Rattus norvegicus 81 AABR07067767.1 ENSRNOG00000056520 ENSRNOT00000080327 3 1 1 88 9 62574195 62574213 TACAGGTGACTTGTCCTGG 59 62574265 62586001 CTCTGTCAAGCATCTGGTG 58 Novel Rattus norvegicus 81 AABR07026151.1 ENSRNOG00000061567 ENSRNOT00000082609 1 1 1 80 16 65931011 65932059 AACACATAACAGAAGCCTCG 58 65932100 65932120 AGATTTCCTTCTCCTCTTGGT 59 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 3 1 1 88 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398594 210398614 AACTGTACTTTCGGAGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054583.1 ENSRNOG00000057311 ENSRNOT00000085951 3 1 1 98 3 162251486 162254144 TTCACTCACTTCAGAGGGA 58 162254204 162254224 TTTATTTGGTCCCACGATGAG 58 Novel Rattus norvegicus 81 AABR07005985.2 ENSRNOG00000059125 ENSRNOT00000089947 1 1 1 109 1 212146437 212146455 AGCTCACTGAAATTGTCCC 58 212146528 212148514 ATTCTGTCAGACGTGTCTG 57 Novel Rattus norvegicus 81 LOC102552829 ENSRNOG00000052879 ENSRNOT00000084277 2 1 1 89 16 71402888 71402906 GTTAGATGCCAGCCATCTG 58 71402957 71406136 AGAATTCTTTCCTCTGCTCTC 58 Novel Rattus norvegicus 81 AC132720.2 ENSRNOG00000052089 ENSRNOT00000090045 3 1 1 70 1 215586157 215586175 ATGGTCTGTTCCAGCTGAC 60 215582316 215582334 TTCAGACCCATAGCAGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC141169.1 ENSRNOG00000054948 ENSRNOT00000084821 1 1 1 135 9 69991264 69991282 AGACAAGACGTAGCAGCTC 60 69987089 69987107 TCACTCAAGCTGCACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC111319.1 ENSRNOG00000058458 ENSRNOT00000082753 3 1 1 113 9 71386848 71387370 GAAATGATACACCAGGCCC 58 71387447 71387465 CCAGCATGGATAACGTGAG 58 Novel Rattus norvegicus 81 AABR07054753.1 ENSRNOG00000060628 ENSRNOT00000088118 2 1 1 80 3 168643682 168646277 ATAGATAAGTGCTCCTCTGGC 59 168646319 168646337 TCTCATGAATGCAGGGAGG 59 Novel Rattus norvegicus 81 AABR07026441.1 ENSRNOG00000055536 ENSRNOT00000085982 3 1 1 96 16 76750241 76750261 AGATTGTCAATGCAGGATGAC 59 76719470 76750186 CCAATTCCACCTTAGTAATTGC 58 Novel Rattus norvegicus 81 AABR07026447.1 ENSRNOG00000057882 ENSRNOT00000084958 2 1 1 80 16 77130341 77136772 AAAGGCATTCAAGGAAAGGAG 59 77130281 77130301 CATAAGTGAGGATGATTGGCC 59 Novel Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 2 1 1 61 X 21946882 21946900 TGTCATCTGCCAAATGGGT 60 21946380 21946860 CTGAGAAATCCTGATGAAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000080924 1 1 2 60 3 174035648 174035666 ACATCTCTTGAGCTGCTGG 60 174040627 174040645 AATTCTTCTGAGGCCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006311.1 ENSRNOG00000060420 ENSRNOT00000079478 2 1 1 80 1 228815491 228815510 CTTGTAGAAGAGCTGACCTG 58 228793683 228815449 AACACAGTCTTCCTTACCTG 57 Novel Rattus norvegicus 81 AABR07068182.1 ENSRNOG00000056564 ENSRNOT00000078715 1 1 1 80 9 87907729 87907749 TTTCAATAGGAAAGGTGGTCG 58 87899571 87907687 CAGATTATCCGGGTGACTG 57 Novel Rattus norvegicus 81 AABR07068182.1 ENSRNOG00000056564 ENSRNOT00000078715 3 1 1 80 9 87907728 87907748 TTCAATAGGAAAGGTGGTCGA 59 87899570 87907687 TCAGATTATCCGGGTGACTG 59 Novel Rattus norvegicus 81 AABR07055333.1 ENSRNOG00000060440 ENSRNOT00000077500 3 1 1 97 7 1587159 1587177 AGAATCCCGATTCTACGCA 59 1587237 1591325 TGTTCATTAATGGACCTGCC 58 Novel Rattus norvegicus 81 AABR07026579.1 ENSRNOG00000054303 ENSRNOT00000090737 1 1 1 122 16 84545738 84545757 CTTCAAGTTCTGAGGACCCA 59 84545842 84545966 ATGTAGTCCATGGAAGCCC 59 Novel Rattus norvegicus 81 AABR07026579.1 ENSRNOG00000054303 ENSRNOT00000090737 2 1 1 123 16 84545737 84545756 TCTTCAAGTTCTGAGGACCC 59 84545842 84545966 ATGTAGTCCATGGAAGCCC 59 Novel Rattus norvegicus 81 AABR07026623.1 ENSRNOG00000052556 ENSRNOT00000085748 1 1 1 60 16 86818859 86818877 CTGAGTCCGTTACTCTGCA 59 86818899 86829775 GGCATAGTTTCAACACTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07056103.1 ENSRNOG00000054038 ENSRNOT00000083267 3 1 1 82 7 20217443 20217461 TGAAAGAAGTGGGAGTGCT 59 20207988 20217397 TAACTTCATCCAGCCTGGA 58 Novel Rattus norvegicus 81 AABR07068447.1 ENSRNOG00000055878 ENSRNOT00000085503 1 1 1 91 9 105808063 105808081 ATCATGTCCACAAGATGGC 58 105808136 105826406 TTTCACCCTCGTTTGTCTG 58 Novel Rattus norvegicus 81 AABR07006724.1 ENSRNOG00000053728 ENSRNOT00000091108 3 1 1 184 1 250199233 250199251 AAGTACCGCTCGGTAATCC 59 250105949 250199086 ATGAGATCCTTCGACTGTGG 59 Novel Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 2 1 1 70 1 251400936 251400954 ATGTAGTCACTGCTGAAGC 58 251387973 251400904 ATCTTATGAAGGAGAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 3 1 1 86 9 110399611 110401434 TGACATTGGAGTATTTCTAGGG 57 110399546 110399565 GGAATTGAACTCTGGACCTC 58 Novel Rattus norvegicus 81 AABR07056415.2 ENSRNOG00000058322 ENSRNOT00000087908 1 1 1 81 7 24400119 24403938 CCATTTCTAAGAGACAACATCG 57 24403979 24403998 TGAACCTTACTTCTGCTCAG 57 Novel Rattus norvegicus 81 AABR07068612.2 ENSRNOG00000052177 ENSRNOT00000081086 1 1 1 80 9 112125003 112125021 ATGAGTGGAAGAGTCCCTG 58 112121787 112124960 AAACCAGGTGTGATAAGCTC 58 Novel Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 1 2 2 80 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146061 26146079 TTCTGGTGCATTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07056465.1 ENSRNOG00000058036 ENSRNOT00000087421 2 1 1 81 7 26181697 26186143 TTACCTCTAGAAGTTCAAAGTCCC 60 26186181 26186201 ACAACAGCCTTTCTTTCTTCC 59 Novel Rattus norvegicus 81 AABR07068712.2 ENSRNOG00000058356 ENSRNOT00000083914 2 1 1 80 9 116290997 116291608 GTAGCAAGAGAACTCTTACTGAC 59 116290939 116290957 CCCAGAAGTCCTAAGAGCA 58 Novel Rattus norvegicus 81 AABR07042668.1 ENSRNOG00000051791 ENSRNOT00000091435 3 1 1 87 19 2391275 2392048 AATGAGGGAAGAATCCAGC 57 2392098 2392117 CCACTACAGCAAAGGATACC 58 Novel Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 3 1 1 89 1 259107349 259111310 GATCGGTCTTCCCAAGGAG 60 259111361 259111381 CATCTTCTCCTTACTGTCACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 1 1 1 60 19 5851829 5851847 AGGAGGAGTCTCCTGTGAG 60 5851867 5852506 GTAATTTGTCTGTACCAGGTACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.2 ENSRNOG00000060517 ENSRNOT00000088160 1 1 1 80 8 5154330 5154843 CCTCGAGAAATTTGATCTCAGG 59 5154271 5154289 TCAGATGGAAGGCCTTCAC 59 Novel Rattus norvegicus 81 AABR07042802.1 ENSRNOG00000052398 ENSRNOT00000086667 2 1 1 62 19 9567052 9567070 AAATCAGCCAACGAATCGG 59 9566617 9566637 AGTTGTAAGAACATGGCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056680.1 ENSRNOG00000054516 ENSRNOT00000078509 3 1 1 131 7 35634685 35739097 GAAGTCAGAGGACTCTGCC 60 35634572 35634591 CCCACCCTTTGAATTCTCTG 59 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000082461 1 1 2 170 1 264488777 264488795 CTGTCCCTCCAATCTGTCC 60 264489687 264489705 ATAAGGCGCAATCAGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 2 1 1 81 7 37404490 37406714 GATCTCGCTTTGTGGTTCC 59 37406753 37406777 CAATACCAAGATCTTCAGATGATCC 60 Novel Rattus norvegicus 81 AC105485.2 ENSRNOG00000056655 ENSRNOT00000083963 1 1 1 106 1 264975533 264976516 GATTGAAGGAGGAGTCCGG 60 264975445 264975463 TAAAGGTGTCAGGTGGCTC 59 Novel Rattus norvegicus 81 AABR07072065.2 ENSRNOG00000057355 ENSRNOT00000084208 2 1 1 80 1 269080684 269080702 AACCAGTTTACCGCATTGC 60 269080745 269081448 ATCGAAGCCCAATGATTGTG 59 Novel Rattus norvegicus 81 AABR07027347.1 ENSRNOG00000051991 ENSRNOT00000078832 2 1 1 60 17 25568587 25568605 ACCAGATTACACGGGAAGC 60 25569069 25569087 AACGAGCATGGCTGTAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043031.3 ENSRNOG00000059345 ENSRNOT00000081723 3 1 1 80 19 18021952 18021970 CTTCTGTCCTCTTCTGGCT 59 18018423 18021911 CATCAGCTAGTTGATTCAGCAG 60 Novel Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 1 1 1 84 19 20784099 20784117 AACGAAGCTGGTGAAAGGA 60 20774729 20784054 CATCTGGGAAATTTGCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.1 ENSRNOG00000052212 ENSRNOT00000078151 1 1 1 88 17 27991847 27995392 TTAGACAGCACGAGGACTG 59 27991777 27991795 GAGGAAGCTCCTTTCCGAG 60 Novel Rattus norvegicus 81 AABR07057231.1 ENSRNOG00000056491 ENSRNOT00000091512 1 1 1 110 7 61874693 61874711 AATTTCTTCCGCGTTCAGC 60 61851310 61851328 AACTGTCTTCCTAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057325.1 ENSRNOG00000059391 ENSRNOT00000086676 1 1 1 80 7 65729584 65731367 GACGGTCATTTACAGAAGCT 58 65729523 65729543 CTGAAAGACAAGCAGGATCTC 59 Novel Rattus norvegicus 81 AABR07043358.1 ENSRNOG00000055131 ENSRNOT00000089095 1 1 1 80 19 27747142 27748333 GAACAACAGGCCCTATTTCAG 59 27747082 27747101 TGCAGAATTGACATGACCAC 59 Novel Rattus norvegicus 81 AABR07043358.1 ENSRNOG00000055131 ENSRNOT00000089095 2 1 1 80 19 27747142 27748332 AACAACAGGCCCTATTTCAG 58 27747081 27747100 GTGCAGAATTGACATGACCA 59 Novel Rattus norvegicus 81 AABR07043365.1 ENSRNOG00000058666 ENSRNOT00000083526 1 1 1 79 19 27833484 27833502 TGATGGACACAGGACATGG 59 27834579 27834597 CCTGCACCTTGTTTAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069728.1 ENSRNOG00000058251 ENSRNOT00000090767 1 1 1 80 8 38128786 38128806 GGAATCATTTCAGCTCTCCTC 59 38128848 38128996 GCTGAATGTAGTGGACCCT 59 Novel Rattus norvegicus 81 AABR07057421.3 ENSRNOG00000059728 ENSRNOT00000079739 2 1 1 80 7 70264842 70264860 TGTTCCTGGAGAGGAAGGA 60 70257724 70264804 CTTGATATGTCATGGATATCGAGAG 59 Novel Rattus norvegicus 81 AABR07069840.1 ENSRNOG00000058968 ENSRNOT00000090495 1 1 1 80 8 41156309 41156330 CATGGAGATCACAATTCCTGAG 59 41155965 41156268 AGGGTGGAAGCATATCCTC 59 Novel Rattus norvegicus 81 AABR07043667.1 ENSRNOG00000054455 ENSRNOT00000087527 2 1 1 103 19 35185307 35190976 CATCAAAGGTACCCTAAGAAGC 59 35191037 35191058 AGAATACTGATTGAGCCATGGT 60 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 1 2 2 80 10 107629 109350 TCGACAAGACAATCTGCCA 59 109394 109412 TCAAATCCTGCACCAAGGA 59 Novel Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 3 1 1 77 19 36173581 36173599 TGGAGCTAACTACCAAGGA 57 36173640 36174951 GGCTCTTGTTCATGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 2 2 2 80 10 196627 197043 AGTGGATTCAGGAACGAGG 59 196565 196585 TCCAGAAGATGTCAGTCATCC 59 Novel Rattus norvegicus 81 AC129395.2 ENSRNOG00000057329 ENSRNOT00000085015 3 1 1 120 10 6889340 6889358 CTTCTGCTTTCACCCACTG 59 6889442 6889969 ACAGGAGCACTGAAATCCA 59 Novel Rattus norvegicus 81 AABR07029111.2 ENSRNOG00000056145 ENSRNOT00000077595 2 1 1 84 10 7871857 7871875 TGACATCGTGAAGGTTGTC 58 7871921 7880166 TGAAGTCAAGAGTGTCTTCTC 57 Novel Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 1 1 1 60 7 83991191 83991212 TTGACCTGAAAGTTCTGAATGC 60 83989709 83991170 TCCATGTCTGGAAACACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029175.1 ENSRNOG00000054141 ENSRNOT00000089720 2 1 1 76 10 11358544 11358563 GCTGATAAGAAACTGGTGGT 58 11362046 11362064 TCTTCCAGCAGTGTACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007566.1 ENSRNOG00000054888 ENSRNOT00000086723 1 1 1 80 2 19431937 19477038 CAAGGTAAGACAACCAGAAGAG 59 19477077 19477097 CAACTTGAAGTTTGTGACCTG 58 Novel Rattus norvegicus 81 AABR07057844.2 ENSRNOG00000061127 ENSRNOT00000091021 3 1 1 80 7 90423034 90423053 TACGTACAGTATGACCCTGG 58 90422433 90422991 CCATAGCCTCTCATAGCGA 59 Novel Rattus norvegicus 81 AABR07058124.4 ENSRNOG00000056785 ENSRNOT00000080596 3 1 1 80 7 101284592 101308851 GATCACAGATGCGTTGTCAG 59 101284531 101284550 GTCAAGATCACATCTGCTCC 59 Novel Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 2 1 1 85 10 33227265 33227283 GTGTCCTTGGTACTGAAGC 58 33227329 33227906 ATTTCCACACTCTTCATCACTG 59 Novel Rattus norvegicus 81 AC119356.1 ENSRNOG00000058744 ENSRNOT00000086947 3 1 1 80 2 28346847 28348253 AGTTGATCTCAGGTTTCAGG 57 28348295 28348314 GTCACAGAGATGCATACTGG 58 Novel Rattus norvegicus 81 AABR07058412.2 ENSRNOG00000059713 ENSRNOT00000086159 3 1 1 62 7 115114858 115114876 TCAGAGTGGGAAACAGCTG 60 115114386 115114405 GAGATATCTTGGAGGGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC112328.1 ENSRNOG00000053602 ENSRNOT00000090955 2 1 1 81 8 59108008 59108027 CTGACTCTCCAAGAACACCT 59 59108071 59110122 GAGGGACTGTTGCTAGCTC 60 Novel Rattus norvegicus 81 AABR07070265.1 ENSRNOG00000056498 ENSRNOT00000084245 3 1 1 82 8 62124507 62124526 CTTTGAGCCAGGAAGAACAG 59 62125963 62125981 TAGCTCCACAGTGAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC095267.1 ENSRNOG00000051809 ENSRNOT00000077229 1 1 1 89 X 156225837 156225856 CTTCATGAGAGTGTGCACAC 59 156221241 156225786 CGACCTGACCTTTCTCAGAG 60 Novel Rattus norvegicus 81 AABR07070341.2 ENSRNOG00000053265 ENSRNOT00000088695 3 1 1 151 8 66357978 66358107 TTGTCCCAGGATGACAGTG 59 66357845 66357863 CATCATTGGTGCCATGGAG 59 Novel Rattus norvegicus 81 AABR07058639.1 ENSRNOG00000053745 ENSRNOT00000091728 3 1 1 82 7 129340958 129340978 ACAGTATACAGACTCTCAGCC 59 129339961 129340914 TTCAACAAGCCAAGCTGTG 59 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 1 1 1 88 8 66731703 66731721 AGTACTGAAGGCCACTCAG 59 66730716 66731652 TGTTTCTCTTGTCGAGTCAC 58 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 3 1 1 89 8 66731703 66731721 AGTACTGAAGGCCACTCAG 59 66730715 66731652 TTGTTTCTCTTGTCGAGTCAC 59 Novel Rattus norvegicus 81 AABR07028036.1 ENSRNOG00000056249 ENSRNOT00000078898 3 1 1 97 17 54180929 54180949 GAAATATGGAACTGCTGGGTG 59 54178574 54180876 CTAGAAGTATCTGTCAAGTGATGTC 59 Novel Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 2 1 1 62 20 5317953 5318590 CTTGGGACCTCAAGGAGAG 59 5317909 5317927 CTCACCTGAGTTCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 3 1 1 76 17 56876259 56876277 CTCTCCAACCATGTCCTGG 60 56876317 56879351 ATCAAAGGTGAGAAGCCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059009.1 ENSRNOG00000054713 ENSRNOT00000090542 1 1 1 60 4 1116205 1116226 CCCGTTAGATGAATACTGTTCC 59 1084232 1084253 AAATTCAAGCATCCAGATGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028143.1 ENSRNOG00000057590 ENSRNOT00000083646 3 1 1 80 17 57832236 57837031 GAACTACTAACCTGAAGATAAGCG 59 57837068 57837088 GGATTTCCTTCTCCAAGTCCA 60 Novel Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723,ENSRNOT00000078360 1 2 2 73 17 62814782 62814801 CTCAGATGACTTTGGATGGT 57 62807955 62807973 CTCTTCTCGACTTGAAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059499.1 ENSRNOG00000058022 ENSRNOT00000081034 2 1 1 80 4 22048281 22048301 TAAGGTTCCACAAAGACAGCT 60 22048341 22068929 TCAGATCTTCCTCTGCATTCC 60 Novel Rattus norvegicus 81 AABR07008099.2 ENSRNOG00000058955 ENSRNOT00000077179 2 1 1 116 2 42878782 42878801 TCTTATTTGTCTTCCAGCCC 58 42877540 42878705 AGATAACAAGATGAGCACAGG 58 Novel Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 2 1 1 61 2 44645853 44647342 CGTCATCTGACATATTTCTTGG 57 44645813 44645831 CAAGGTCTTCCGATTAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 2 1 1 111 20 23359617 23359635 CTGTGTCCAGACTCCACAG 60 23351322 23359542 TTTCCTGGACAGGTGTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071199.2 ENSRNOG00000060001 ENSRNOT00000078201 2 1 1 80 8 104389034 104390962 TCAGGAAGTTTATGCTTGTGAG 59 104388975 104388993 TCGTCATAAGCAGAGGCTC 59 Novel Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 3 1 1 61 4 44646973 44646992 GATGCTCATGGCTCAATGTG 60 44639618 44646953 CATATACCTGTCTTTCACACTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC116288.1 ENSRNOG00000060822 ENSRNOT00000084692 3 1 1 84 4 48932468 48932490 CTGAATGTGAAGTCTGGATTCAC 60 48928943 48932430 GGTGATTTAATCTGTATCACCTCTC 59 Novel Rattus norvegicus 81 AABR07008287.2 ENSRNOG00000061261 ENSRNOT00000083266 1 1 1 80 2 51571968 51582153 GGACTTGGTTACAGAAGTCC 58 51571907 51571927 ACTCTGACAGGAAGTATGAGG 59 Novel Rattus norvegicus 81 AABR07060084.1 ENSRNOG00000058930 ENSRNOT00000091929 2 1 1 81 4 53255636 53255660 GTCTGAAGATAGACTATTACACCAG 59 53255698 53271221 CATCTCCTGAGCTGAATCCT 59 Novel Rattus norvegicus 81 AABR07071385.1 ENSRNOG00000056504 ENSRNOT00000077851 3 1 1 64 8 112996286 112996306 TTCAGTATCATCCCTGCTCTC 59 112993116 112993134 CTGTATGGAACCAAGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 3 1 1 70 4 63631540 63698671 GAACAATAGAAGGCGAAGATAGC 60 63631492 63631510 GTAGAAGGGAGGTAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 1 1 1 98 8 114131948 114131966 ATGAAGTGGCTGATCGACC 60 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07060318.1 ENSRNOG00000058306 ENSRNOT00000086478 3 1 1 71 4 67100563 67100581 CAACTGGTTTGGGAAAGCT 59 67103094 67103112 ATATTGCCCACTGAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 1 2 2 80 4 68424643 68424664 TGAGATTAAAGAACTCCACAGC 59 68424703 68425215 TCATTCATGTCAATCCACAGG 58 Novel Rattus norvegicus 81 AABR07008485.1 ENSRNOG00000061419 ENSRNOT00000087846 1 1 1 61 2 61038800 61038819 ACAGGATGAAACGTACTCAC 58 61038588 61038609 CAAGATAGCAGATTAGCTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC120721.1 ENSRNOG00000054040 ENSRNOT00000077346 1 1 1 77 4 78667559 78667577 TGCAATTCATCTTGCTCCC 59 78684474 78684493 GGGTTCAGTCTTCTGTACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC120721.1 ENSRNOG00000054040 ENSRNOT00000077346 3 1 1 78 4 78667559 78667577 TGCAATTCATCTTGCTCCC 59 78684474 78684494 TGGGTTCAGTCTTCTGTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008594.1 ENSRNOG00000058273 ENSRNOT00000080790 1 1 1 82 2 65870808 65870827 AACACTCAGTGAAATCAGCT 58 65851558 65851581 CCTGATAAGTTATCTGCTTCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC241722.1 ENSRNOG00000053975 ENSRNOT00000085523 2 1 1 100 Y 1949497 1949516 TATTTCTTGGCAGCATTGTG 57 2027158 2027178 GGTATTCTCCAGCAATGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 3 1 1 84 4 80484385 80486382 AACTAATCGGGAGGAGCTG 59 80486429 80486448 TCTTTCCCATCACAGAGGAG 59 Novel Rattus norvegicus 81 AABR07008661.1 ENSRNOG00000051543 ENSRNOT00000088420 1 1 1 60 2 69035913 69035931 ACTTCCCATCTCAGCTCAC 59 69038682 69038700 GAAACTGAGGATCCATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008661.1 ENSRNOG00000051543 ENSRNOT00000088420 3 1 1 60 2 69035912 69035931 TACTTCCCATCTCAGCTCAC 59 69038681 69038699 AAACTGAGGATCCATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060589.1 ENSRNOG00000061189 ENSRNOT00000089053 1 1 1 138 4 82481809 82481827 ATACATCGCTGTTGTGCCT 60 82484999 82485658 TTTCCTGCACACCTTTCCT 60 Novel Rattus norvegicus 81 AABR07058672.1 ENSRNOG00000052733 ENSRNOT00000083253 3 1 1 82 7 131193127 131193148 GAAACCATTATTGGAGTTCAGC 58 131193189 131200730 TAGCTCCCTTCAAATTCTGTC 58 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 3 1 2 70 7 134985984 134988458 AAATGATCTCTTCCCGTTGTG 59 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 3 1 1 80 19 56541203 56541458 ATATGGATCAGCATGGAGGA 58 56541501 56541519 AGACGCTCTCAATTCTGTG 58 Novel Rattus norvegicus 81 AABR07058805.1 ENSRNOG00000055438 ENSRNOT00000089767 2 1 1 80 7 138228631 138228649 TGCTGTTGCTATCTGAGGA 58 138228692 138228873 GTTGAGTCCCAGAATTCCTG 58 Novel Rattus norvegicus 81 AABR07009351.1 ENSRNOG00000058574 ENSRNOT00000079444 3 1 1 96 2 93847275 93847295 ACATTTGATGTGAAGAACCGG 59 93845651 93847217 CACAGCTTGCTGAGTTGTG 60 Novel Rattus norvegicus 81 AABR07058976.1 ENSRNOG00000054065 ENSRNOT00000077914 1 1 1 107 7 145727982 145728001 GGTTTAGGGTTAGGGTTAGG 57 145728310 145728328 CTACCCTAACCCTAACCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010587.1 ENSRNOG00000054842 ENSRNOT00000078574 1 1 1 80 2 141637402 141637420 ACTGACATCACACTAGTGC 57 141637464 141639970 CTTCTTGGCTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 1 1 1 62 2 155301997 155303700 TGTAGCTTCAGTCTTAAAGGAC 58 155303723 155303741 AAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 3 2 2 143 2 156311186 156316031 AGTACTCCAAGGGCATGAG 59 156311061 156311082 CCATGTATATCAGCGTTTAGGT 58 Novel Rattus norvegicus 81 AABR07011888.1 ENSRNOG00000053028 ENSRNOT00000085019 1 1 1 80 2 174306751 174306771 CTAGGACAGATTCGACTCCAG 60 174254895 174306710 AGTTCCACTGAAATGTCCGT 60 Novel Rattus norvegicus 81 AABR07011947.1 ENSRNOG00000061687 ENSRNOT00000090996 1 1 1 82 2 177482374 177489455 CAGAGACTTGGGTGGACTC 59 177482310 177482330 CTCCTCATATGTAGTCAGCCT 59 Novel Rattus norvegicus 81 AABR07012051.2 ENSRNOG00000057323 ENSRNOT00000087787 3 1 1 84 2 183913601 183914891 ATTTCAGCATACCAAAGCCTC 59 183913537 183913555 CCTCCAGGTGACTGATGTC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 3 1 1 91 2 184916590 184916843 TTGTGTCATGTGGACCTCC 60 184916517 184916536 ATATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014499.1 ENSRNOG00000060060 ENSRNOT00000088642 1 1 1 80 14 18155483 18157135 TATGTGACCTTCAGAGATGGG 59 18155423 18155446 GTGTTTAGATGTAGACTAGAGCTG 59 Novel Rattus norvegicus 81 AABR07014499.1 ENSRNOG00000060060 ENSRNOT00000088642 2 1 1 81 14 18155484 18157137 AGTATGTGACCTTCAGAGATGG 59 18155424 18155448 TGTTTAGATGTAGACTAGAGCTGAG 60 Novel Rattus norvegicus 81 AABR07012884.1 ENSRNOG00000052614 ENSRNOT00000081168 3 1 1 81 2 213687107 213687637 ACATGACAGCCACAGATCC 60 213687679 213687700 GTCTTTCTTGATGACGTTTGCT 60 Novel Rattus norvegicus 81 AABR07013140.1 ENSRNOG00000056951 ENSRNOT00000091134 3 1 1 105 2 224408727 224418838 TGAATGAAGATGGAGAAGAAGC 59 224418901 224418922 TTAAATAAGGGTGGTCCTTCAG 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 3 1 1 77 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143212 225143954 TTTAGGTGAGGAAAGGGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013249.1 ENSRNOG00000061460 ENSRNOT00000080106 1 1 1 80 2 230384534 230384557 GTACCATTGTCAACTGATGATAGG 59 230377971 230384496 TTGAGTCATGGTCCATCTGG 60 Novel Rattus norvegicus 81 AABR07013304.1 ENSRNOG00000055380 ENSRNOT00000077485 1 1 1 224 2 232650761 232650780 GGAACAAAGTTCCCACAGAG 59 232637260 232648327 CTCCTTTCTTGCAGTCCTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013686.1 ENSRNOG00000055290 ENSRNOT00000087168 1 1 1 80 2 250349589 250352324 TAATATCCAGTCCTGTACGCC 59 250349529 250349548 CGGCTTGCTCCTTAATACAG 59 Novel Rattus norvegicus 81 AABR07013841.1 ENSRNOG00000059248 ENSRNOT00000078408 2 1 1 80 2 258783426 258783725 TAATGCTGACAAGGTCATCC 58 258783768 258783786 ATGAAGTCAGAGCAGACGA 59 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 1 1 1 78 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35955758 35955778 TTAGAGCATGAGAGCTTAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000014713 3 2 4 81 3 140159558 140160340 AAGGAGATCATCCGGACTG 59 140160382 140160403 CTAGACTCAGATATGTTGGCAC 59 Novel Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 3 1 1 86 15 44329494 44329512 CTCAACAAAGGCCACAAGG 59 44329579 44329597 GAACTTGGTGTGCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005031.1 ENSRNOG00000036293 ENSRNOT00000054415 2 1 1 62 1 176078604 176078623 CATCTCTGGGCGAGTATCTC 60 176078561 176078579 AAGGCACAGAGGCTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000060577 ENSRNOT00000084254 2 1 1 61 8 70702118 70702139 CAGATCGTATAAATCTTTCGCC 58 70702078 70702097 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043169.1 ENSRNOG00000024754 ENSRNOT00000031820 3 1 1 65 19 25180867 25180885 CGATAAGCAAAGGTCAGCG 59 25180816 25180834 TCTTGGAGAAACTGAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC121413.1 ENSRNOG00000056044 ENSRNOT00000080738 1 1 1 71 17 9689757 9689775 CAAGTGAGACAGATGGGCA 60 9689809 9689828 GCACAAGGGAAGAGTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072995.1 ENSRNOG00000056668 ENSRNOT00000086134 3 1 1 60 4 56675680 56675699 CCTTTCTTCCTCTCACAACC 58 56675639 56675660 GACCCACAGTAACTACTTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039139.1 ENSRNOG00000050331 ENSRNOT00000074830 2 1 1 71 X 69152300 69152319 CTGGTGCTAAATTGGGAGAG 58 69152244 69152262 GATATTGTCCACTGGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07039648.1 ENSRNOG00000002789 ENSRNOT00000003730 1 1 1 60 X 81816990 81817008 CCCATTAAGGAGTCTCCGA 58 81816948 81816969 GAACCACATCCTTTAGAGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054060 ENSRNOT00000083440 1 1 1 60 1 249097756 249097777 GTATTAGGTAGCTGTACTCCCA 59 249097796 249097816 CCACATTTGGAACTTGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 1 1 1 65 18 40124192 40124210 CCCAGTGTTACTGGGACAG 60 40124241 40124259 GACTTGAATCCTTGGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 3 2 3 74 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386150 121386168 TGCTTCTGTCCAGACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 1 2 2 80 7 116558121 116559929 CAGAAGTTGTTGTGAGCTCTG 60 116558061 116558080 CAGTTTGAGAACTCGTTGGG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 2 2 2 80 7 116558115 116559924 GTTGTTGTGAGCTCTGTAAGAG 59 116558056 116558075 CTCAGCAGTTTGAGAACTCG 59 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 1 2 2 85 7 142860724 142861286 TGGATGTTAGCACATGACCA 60 142860658 142860676 TTCCTTCACTGCTGACCTG 60 Novel Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 1 1 1 60 8 43835780 43835800 TCCATTGTCTGGTCTATTCTG 57 43835825 43835843 ATGTCTGGAAAGCTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 3 2 2 73 X 66516489 66516507 AATCCTCAGCCTTGTTCCA 59 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008443.1 ENSRNOG00000059568 ENSRNOT00000081192 2 1 1 81 2 58679076 58679095 TCAGATACAGACGCTCAAGG 59 58679139 58681492 TGCTGCAGACTTGTACCTC 60 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000059788 ENSRNOT00000089413 3 1 1 61 1 116746403 116746424 GACAACAGAAAGTCAAGAACAG 58 116746363 116746382 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 3 2 5 97 2 123761677 123762137 TCATTACAAGATGCCAACGT 58 123762197 123762215 ATGATGAGCTCAGCATCCA 59 Novel Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 2 1 1 64 6 93357152 93357176 GTACATATCTAGATACATGGGACTG 58 93357199 93357218 CAAATGAAGAGTCACGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000076044 2 1 4 88 5 171667068 171668412 TAAGAACCAGAGCTCACTGG 59 171666999 171667017 CTCAGAGGTGGTTGATGGG 60 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000076934,ENSRNOT00000029245 3 3 3 118 X 73667467 73667486 TTTCACAAGCATGCCAAGAG 60 73666603 73666911 CCATGAGAACTTCCCTCCC 60 Novel Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000076090,ENSRNOT00000004278 3 2 2 80 X 72076611 72076632 GAACTTCCGTCTGATCTATGAC 59 72075770 72076570 CACAACTTGTACTTGGCCT 58 Novel Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 3 1 1 64 8 13223531 13223552 GACTAAGTTGCTTCTGATGTCG 60 13223581 13223599 TCCTGCTCATCATGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 2 1 1 62 19 426209 426227 CCTGAGGTTCCTGACAGAG 59 427425 427443 GGATTTGGCCTGAAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000083943 2 1 2 96 16 31273646 31274410 TACACTCATCAGACCATACCA 58 31273433 31273452 CCTAAGGGTCTAACAGAGCA 59 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627 1 1 2 80 1 254565986 254568215 GTGGACAAGAAGAGTTAAGGG 58 254571388 254571408 CAGTATTGGTACTTGAGGGAG 58 Novel Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 2 1 1 60 15 109346166 109346184 TCTTAAGGGATGGTTGGGT 58 109346208 109346229 GACAATTTCTCCACCAAGTAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 1 1 1 60 X 107634272 107634292 GAGAAACATACAGTCGTTCGC 60 107634313 107634334 CCAGTTCTCAAAGGTTTCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 1 1 1 64 1 158864626 158864644 GCCAGTATCTGTTGTCACC 58 158864674 158864692 CTGAGATTCCACCTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 1 2 4 100 9 88282556 88282575 TGTAATGTAACCTACCCGGG 59 88280156 88280174 CATCTCATACCAGGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 1 1 1 118 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673859 110673877 CATGACTGCAGAACTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000080528 1 1 4 83 9 81645199 81645217 AAGTACAAAGACGACCTGG 57 81645263 81645678 TTGAGGTAGCTTGTCTAGGA 58 Novel Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 1 1 1 60 7 108551227 108551246 CCTGGAGAGTTACCCAAAGG 60 108551185 108551203 TTTGAATTGGTGCTGGACG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058525 ENSRNOT00000090967 1 1 1 63 15 103509982 103510000 AGAGAAGCCGTGTCTACAC 59 103510024 103510045 CGTTAGGCTACAAACCATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.1 ENSRNOG00000051012 ENSRNOT00000075395 2 1 1 60 3 150414593 150414611 CTCCTAACAGCAGGAGCAG 60 150414551 150414571 AGGAAAGGATCCTAAAGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 2 1 1 60 11 36589481 36589499 TCAACAGTTCGCTTAGGCA 60 36589520 36589541 CTTCCCTTGTTATTGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057432 ENSRNOT00000088028 1 1 1 60 18 25401838 25401857 GTCAGTAGACGGCATAACAG 58 25401797 25401815 TGTTCATAGGTCGGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 2 1 1 66 2 2510219 2510241 CTCCAACTACTGGAACTTATCAG 58 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 2 2 3 80 X 74012057 74014923 AAGACTGCTGGATACAGCA 59 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 3 1 1 60 13 54914980 54914999 AAAGAATCTCCTCCCAGCAG 60 54915022 54915042 GTAATAAAGTACTCGCTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 1 1 1 60 8 42839619 42839637 CCCTCTTCCTTCTGTTCCT 58 42839574 42839592 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 2 1 1 60 8 42839618 42839637 CCCTCTTCCTTCTGTTCCTG 60 42839574 42839592 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 1 1 1 60 2 131957278 131957299 GGTACATTCTTTGCTATTCCTC 57 131957237 131957256 TATAAATGGCACTGACCCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280 3 1 2 80 14 32897004 32897170 TCACAATCAACTACAATCGCTG 59 32896945 32896964 GTACCGGACTCTTCTTCAGG 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 2 1 1 61 14 93085262 93085280 GCAGAAGTCCATGGAACCT 60 93086749 93086768 TAGTTGCAGGATTCCATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 1 1 1 60 5 85124140 85124159 CCGAATCGTGATTCTAGCTG 59 85137788 85137809 AGGATAGTTGTTTGCATAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 3 1 1 61 15 1161403 1161421 TGCCAGCATGATGAATGTC 59 1152898 1152921 CAAATTAGGTCCACATCTCTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000082851 1 1 2 81 5 132700492 132700513 CCTTTAGGCATAAATGTTGTGG 58 132700552 132706049 CATCATTTATGCCTGGATTCAC 58 Novel Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 3 1 1 78 6 26142048 26142066 CCTGACTCTGCTTCTCACC 60 26145360 26145378 ATCTTCTCAGGCCTCTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 1 1 1 60 18 49224672 49224692 GGATTCTTAGCCTTATGAGCC 58 49223941 49223962 GTGTGAGTATTGTTGAGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 3 1 1 60 18 64304002 64304021 CAAACCTGTCTCCAGAAGTC 58 64309467 64309489 CTAGCACTTTCTCCATAAAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 1 1 1 102 18 85816869 85816887 TTGGAGCTATTGTCGTGTG 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 2 1 1 60 3 66080129 66080147 ACAAATCTCCACAACTGCA 58 66075094 66075116 GTCCTCATACAGAGTATGTAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 1 1 1 70 6 133642479 133642497 CCATCCTGGATAGTGAACC 57 133632958 133632976 ATTTCTACCCAGGCAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 2 2 2 87 6 133668570 133676831 TGGAATAGGCCAACATCGT 59 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000085147 1 1 3 83 12 3223498 3223516 AGGTGTAGGCTTGACAGTG 59 3223562 3224153 GCTGAAGCCCTTTAAGACAG 59 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 3 2 3 80 12 3308126 3308146 AAACTCTTCTGGCAAATCACC 59 3308187 3309526 CCTCTTGATGCATTATCGCA 59 Novel Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 1 1 1 77 6 141112600 141112621 GACTGCTAAACATGAAGTTGAG 58 141112438 141112456 GCTGTACTTCACACTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 2 1 1 60 1 153456476 153456499 CTCAAGTGGAATTAGAAATCAGGG 60 153457373 153457391 CCAATTCAACCAAAGCACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 1 1 1 63 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20525024 20525042 CCTCACATGTGAAGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 3 1 1 60 9 26953158 26953178 AGTGGATCCAACTTTCTGGAG 60 26952789 26952809 CTAAAGTCGATCACATTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 3 1 1 60 1 227287288 227287306 AGTGACTGGATGACAAGGC 60 227288922 227288941 ACTTGTGGAATCATGATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 2 1 1 60 1 229097647 229097665 TCACCTTGTTCAAGGAGCA 59 229100222 229100240 GTTCCACCATATCCACCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000088976 3 1 2 123 7 26145821 26145937 TACAGAGGGCTAGGTCTCC 60 26145716 26145734 TGTCTCACTTACTTCCGCC 59 Novel Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 3 1 1 68 19 5851825 5851843 TCTCAGGAGGAGTCTCCTG 59 5852488 5852510 CCATGTAATTTGTCTGTACCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 2 1 1 67 7 50073490 50073508 TATATGCTGCCCTGAGTGG 59 50072562 50072582 ACGTAATAATGCTCAGCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 1 1 1 60 7 62839112 62839130 AAGCGCTTACTCCAAACAG 59 62839874 62839894 CTCATAGAGGTAGGAGAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 3 1 1 75 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82411835 82411853 TCATGGTTTGGACACAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 1 1 1 60 8 56024591 56024609 AAGTCACTGCCAATCACAC 58 56024034 56024054 AGTTATAGCTTTGTCCTTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 2 1 1 60 7 126382977 126382995 CTGGAGTCACTCCAGAGAC 59 126383599 126383619 CATGATGGATGATAGATGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 1 1 1 89 4 17666212 17666230 AGGATTCAGAGTGAGTCCC 58 17668584 17668602 GAACTCCAGGCTCCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 1 1 1 60 20 18258560 18258579 CCAAGGAGATTTCTCAACCG 59 18248164 18248185 CGTTTACGAACTAAATGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 3 2 2 130 20 45683293 45684506 TCCCACGTATCCAGATACG 58 45684600 45684618 CTCCTTACCCAGACACCAG 59 Novel Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 1 1 1 63 20 48815843 48815861 AATGAAGACCACCACAGTG 58 48814469 48814490 CATGTCCTTGCTTGTTTATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 3 1 1 70 Y 2027467 2027485 CGATGCTGTGACTCTTCTG 58 2038673 2038694 ACTTTACTCAATCTAGGACAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 3 1 1 90 8 129157622 129157640 GAACCTAAGTCGGAGGCAG 60 129156214 129156234 CTCCATCTGAGAAACCATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 2 1 1 60 2 133028532 133028551 TCTGCAGGAAAGTCCTACAG 59 133026418 133026440 CATCCTCTACCACTTATATGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 2 2 2 110 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311098 156311116 CAGGTAGGGAAGGGAAAGC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 1 1 1 71 2 184916847 184916865 TCCTACACCTGCAAGATGG 59 184916559 184916578 ACCAAATATTTGAGCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 1 1 1 77 2 206162761 206162779 GCACCAAGAAGGATTTCCC 59 206157106 206157124 TTTCCTTCTGGTCCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 1 1 1 126 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538790 233538808 GTAAGCTGTGCTTCGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 3 1 1 64 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249515151 249515171 TTCAATTTCAGCCTCCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332 3 1 2 82 2 254034695 254038815 CTACGCCAAACTTAAGGAACAG 60 254038858 254038876 TGCACTGTAGCTGTCTGTC 60 Novel Rattus norvegicus 81 Sh3d19 ENSRNOG00000011752 ENSRNOT00000015802 3 1 1 80 2 185423326 185425326 CAAATTCTCAGGATAGCAGCC 59 185425368 185425386 CTAAGTCCTCGCTGGTCTC 59 NA Rattus norvegicus 81 LOC100912421 ENSRNOG00000031027 ENSRNOT00000049593 2 1 1 60 5 137514841 137514860 CTATAACATTGCCACAGCCT 58 137514800 137514821 CACATCCTTGTTCCTTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf180 ENSRNOG00000043329 ENSRNOT00000066069 2 1 1 80 2 35850675 35853302 TACAGAAGCAGGGTAAATACTC 57 35766321 35766342 GCTCATCATCTGTACTCATCTC 58 NA Rattus norvegicus 81 Gucy1a3 ENSRNOG00000012302 ENSRNOT00000017190 3 1 1 80 2 181051010 181051031 TCTGGCTAACAAATTTGAGTCC 59 181048145 181050974 CAGTCTTTGAGTAACCTGTATGTC 59 NA Rattus norvegicus 81 AABR07012317.1 ENSRNOG00000049173 ENSRNOT00000072995 1 1 1 66 2 193063297 193063315 AAGTGCCCTCCTAAGTGTC 59 193063249 193063267 ACTTGGGAGGACACTTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 1 2 2 80 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 2 1 1 80 2 93982956 93985223 CTACATGAAGGAACTAGGAGTAGG 60 93982899 93982918 TCGAGGGTAATGATGCAGTC 60 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 3 1 1 80 2 93985258 93985276 CTTAAGGACCTGGAAGGGA 58 93982952 93985214 CAGCCCTACTCCTAGTTCC 59 NA Rattus norvegicus 81 LOC100362724 ENSRNOG00000038965 ENSRNOT00000015146 2 1 1 60 X 20563671 20563689 GACAGACTACGAAGGAGCA 59 20563711 20563731 TTCCTCTTTCACCAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 1 1 1 80 2 217963588 217971916 AGATACCTTAACTCAGATTAGCCC 60 217971955 217971973 CAAATGCATCGTCCATCGG 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 3 2 2 81 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699126 ATGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Ankrd34a ENSRNOG00000033741 ENSRNOT00000043535 2 1 1 186 2 198721760 198722346 GGACATTCAGGGATAGGCT 59 198722496 198722514 AAGCGTAGCTTACCCTGTC 60 NA InUTR Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581,ENSRNOT00000084758 1 2 2 80 8 64233077 64267928 CGAGGTCATCCAGAATCCA 59 64233015 64233039 CTTTCCATTAGCTTCTCTTTATCCC 60 NA Rattus norvegicus 81 Olr1125 ENSRNOG00000026489 ENSRNOT00000039181 1 1 1 60 8 18846420 18846439 TCACTCCCATGATGAATCCT 58 18846462 18846480 AAAGCCTCAACCATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igll1 ENSRNOG00000025990 ENSRNOT00000029851 1 1 1 121 11 88388466 88388486 GTGTCCACCATATACTTTCCC 58 88388569 88389652 GATCTGGAACAGGAACCTG 58 NA Rattus norvegicus 81 Il10rb ENSRNOG00000028638 ENSRNOT00000061345 1 1 1 80 11 31573101 31577217 ACAACCAGTGATGAAACAACC 59 31577254 31577277 TAGGAAGAGGAAGACTATCAAGAC 59 NA Rattus norvegicus 81 Mir6323 ENSRNOG00000048889 ENSRNOT00000074134 1 1 1 72 11 84827033 84827051 CTGTGAATGCAGTGAGTGC 60 84827087 84827105 GAGATGGAGTTCCAGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankra2 ENSRNOG00000048118 ENSRNOT00000073183 1 1 1 80 2 28374389 28376156 CTCTGTTAGCAAATTCTCTGTC 57 28376195 28376215 CTTGTTCAATACGAGTAGCCA 58 NA Rattus norvegicus 81 Ankra2 ENSRNOG00000048118 ENSRNOT00000073183 2 1 1 80 2 28380165 28380185 CCCAACAATTGAAACAGACTC 58 28380225 28380752 ATGACCTGTTGAACACTTCTG 59 NA Rattus norvegicus 81 Ncr3 ENSRNOG00000000854 ENSRNOT00000001139 1 1 1 84 20 5175238 5175256 ATCTACGTGTGCAGAGTGG 60 5175304 5175425 GAGGAGGCTCTTTCTCCAC 60 NA Rattus norvegicus 81 Fgf9 ENSRNOG00000011471 ENSRNOT00000015367 1 1 1 81 15 38342017 38342041 CTGGATTTCACTTAGAAATCTTCCC 60 38342079 38352257 AATTCCAGAATGCCGAATCG 59 NA Rattus norvegicus 81 Tmem125 ENSRNOG00000045872 ENSRNOT00000072816 3 1 1 60 5 137372677 137372696 TTGCATGTTATCTCCCACCT 59 137372719 137372737 CCCTTCCCTAAGACTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 1 1 5 81 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26448479 26448498 CCTGGTACCACTTCATAGGA 58 NA Rattus norvegicus 81 Mir582 ENSRNOG00000040434 ENSRNOT00000062187 2 1 1 61 2 40863756 40863776 TGGATACAGTTGTTCAACCAG 58 40863798 40863817 GGTTCAGTTGTTCAACAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3554 ENSRNOG00000035606 ENSRNOT00000053729 3 1 1 60 5 107206560 107206579 CAGGTTCTCAGTTCAACAGC 59 107206519 107206537 CCTGAAACTTGGAACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 1 2 2 80 2 57209151 57210078 ACAGTTTGGACACATGCAG 59 57210122 57210142 TGTCACTGTCAATTGTAAGCC 59 NA Rattus norvegicus 81 AC118954.1 ENSRNOG00000058912 ENSRNOT00000090993 2 1 1 80 20 7333893 7333912 CTGACACCCGTTTAAGACTG 59 7333952 7335368 TGTAGCCACATAATTTGTCCTC 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 1 2 2 80 X 31167572 31167592 ACGAGTAAGAATGAGATCCAG 57 31167632 31171997 ATACTTGAAAGGATCTGTCCC 57 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 2 2 2 80 5 136074065 136074897 AAGACTATTGGGATCCTGGC 59 136074004 136074022 CATCAGGCTGTGAATCACG 59 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065,ENSRNOT00000035125 3 2 2 82 1 56163384 56163403 ATAAGTGAACTGCAGCTGGA 60 56162282 56163340 TCATAGAAACCTGAGCTGGG 59 NA Rattus norvegicus 81 Smcp ENSRNOG00000009326 ENSRNOT00000012371 1 1 1 124 2 192776116 192780486 CCTGATCAGAAACTCCAACTC 59 192776012 192776030 TGATTTCTGCAGACAGCAC 59 NA InUTR Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000008932,ENSRNOT00000082180 2 2 2 84 14 79460022 79460040 TACAAACGTGCTTTGGCAG 59 79459594 79459976 CCTGGATGCCATATAACTTGG 59 NA Rattus norvegicus 81 Zdhhc14 ENSRNOG00000029049 ENSRNOT00000043521 1 1 1 80 1 46544488 46578219 CTGGAAAGGCAAATAGACATCG 60 46578256 46578278 GATGATGACTTCTTTGGTTCTGG 60 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 3 2 2 80 1 282569948 282569968 TCTGAAGACTGCCTGTATCTC 59 282570009 282570737 GATCCATACCATCACAGGCA 60 NA Rattus norvegicus 81 Map4k2 ENSRNOG00000021061 ENSRNOT00000064798 1 1 1 80 1 221713916 221713934 ATGTTTCCAGACACCATCC 57 221713976 221714100 CACTTGGTGAAATTGGATCTC 57 NA Rattus norvegicus 81 Pir ENSRNOG00000003674 ENSRNOT00000004884 2 1 1 80 X 31863328 31872014 GGAGATGTGTATATTGGGCCT 60 31863268 31863286 AGTGTCACCTTCTCCAAGC 60 NA Rattus norvegicus 81 mageb1l1 ENSRNOG00000048202 ENSRNOT00000074089 1 1 1 60 X 54865194 54865218 GATCTACTTAAACAACTACTGTGCC 60 54865158 54865179 TAACATATTCAGGAAGTGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 mageb1l1 ENSRNOG00000048202 ENSRNOT00000074089 3 1 1 60 X 54864979 54864997 GCAAGAGAAAGGTGATGGA 58 54864937 54864955 GAGTAAGAACTGGGCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dppa3l1 ENSRNOG00000022376 ENSRNOT00000036219 1 1 1 60 8 60683562 60683581 CAGATGAAAGACGAAGAGGG 58 60683521 60683540 CTAGTGTTTCTGGTTGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gde1 ENSRNOG00000050445 ENSRNOT00000073233 1 1 1 80 1 188401617 188401636 CTGGCCGATTATGTGATCTG 59 188398199 188401577 GGAACTCATTTCTGAGTCTGTG 59 NA Rattus norvegicus 81 Olr507 ENSRNOG00000055270 ENSRNOT00000090035 3 1 1 60 3 73800680 73800701 TATGTATGTGCAACCTAAGACC 58 73800641 73800661 AAAGATGGAAGCCACTTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir1912 ENSRNOG00000046748 ENSRNOT00000071202 1 1 1 60 X 118130663 118130681 GGATGTGCTCATTGCATGG 60 118130705 118130723 TCTCACTGCATGTTCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5sl ENSRNOG00000020596 ENSRNOT00000027960 2 1 1 80 1 82414702 82414720 TTCCATGACGTCCAGACTC 59 82414763 82415968 CCTGTAGGATCGATTCTCCA 58 NA Rattus norvegicus 81 Olr347 ENSRNOG00000057869 ENSRNOT00000089953 3 1 1 60 1 229877677 229877697 AACCTGGGATTGATTCTACTG 58 229877716 229877737 AAATATACATGGGACTGTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr486 ENSRNOG00000029884 ENSRNOT00000052306 3 1 1 60 3 73560826 73560847 TGTCCAGCCTAATTCTAGTCAC 60 73560787 73560807 GGTATAGAATACGGAAGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbt ENSRNOG00000015029 ENSRNOT00000020267 3 1 1 81 2 219587913 219588925 ATCACCTACAAGGCCTCTC 59 219588970 219588988 GAACGTTCTTCACGTTGGG 60 NA Rattus norvegicus 81 RGD1306233 ENSRNOG00000010152 ENSRNOT00000013473 1 1 1 80 3 7050973 7050992 CTGTTTCCATGTACAGGACC 58 7048178 7050933 GATAATATGCTTTCGGCATCTC 58 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 1 2 2 80 1 176918262 176918281 CATGTTTGATCTGCTGTTGG 58 176918323 176919883 ACTTTCACCATCACTTCTCC 58 NA Rattus norvegicus 81 Ceacam11 ENSRNOG00000017620 ENSRNOT00000023686 2 1 1 81 1 79399735 79402689 CCTCAAAGTAAACAAACCTGGA 59 79402731 79402749 CTTCTTCGAGGTCCAGGTC 60 NA Rattus norvegicus 81 Paip2b ENSRNOG00000014092 ENSRNOT00000019399 2 1 1 80 4 115488923 115492858 ATTTCAACAGACAGGTGGAG 58 115488862 115488880 CCTCTTCATCCAGCATCTC 57 NA Rattus norvegicus 81 Snx19 ENSRNOG00000014719 ENSRNOT00000020041 1 1 1 80 8 31507460 31529144 AACGCTAGTTCAGAGGTGG 59 31529188 31529206 AGAAGGCGGAGGTATTGTG 60 NA Rattus norvegicus 81 LOC103692171 ENSRNOG00000054176 ENSRNOT00000083560 2 1 1 82 4 114815325 114815343 GTGAACTTGGTGACTTCCG 59 114815389 114815553 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Zbtb22 ENSRNOG00000000476 ENSRNOT00000000558 1 1 1 60 20 5478293 5478311 ATCTTCAGCCGCTACTACC 59 5478251 5478269 ACAAGGGACAGAGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt8l2 ENSRNOG00000049096 ENSRNOT00000073555 3 1 1 98 15 34623319 34623338 AAACACCCAGGTCATCTCTG 60 34623017 34623258 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Eif2b3 ENSRNOG00000018375 ENSRNOT00000024841 3 1 1 80 5 135892751 135908777 AAACTTAAGACTGATGTGCTGG 59 135908818 135908836 TCTGAACAGGTCCACAACC 60 NA Rattus norvegicus 81 C1qtnf9 ENSRNOG00000013793 ENSRNOT00000018533 1 1 1 81 15 41070268 41070291 CTTTATTTACAGTGTGAGGGTTCC 60 41070331 41074318 ACACGGTCTGGACTTAACC 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 3 2 2 80 3 6465058 6465076 ATGTTGCCTACCGAGTCTC 59 6465118 6471268 CCTCAGGAAAGTCAGACTCAG 60 NA Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 2 1 1 77 2 182726657 182726678 GACAACGACATAATGGAAACTC 58 182730107 182730130 GTTGATGTAGGTTATCTCCTTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 3 1 1 79 2 182726653 182726673 GGATGACAACGACATAATGGA 58 182730107 182730128 TGATGTAGGTTATCTCCTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 Tmem214 ENSRNOG00000008812 ENSRNOT00000011838 1 1 1 80 6 26873064 26873084 GTACCGCATCTGTATTCAAGC 60 26872670 26873023 AGAAGCTCCAGGAACTTGTC 60 NA Rattus norvegicus 81 Tmem214 ENSRNOG00000008812 ENSRNOT00000011838 3 1 1 80 6 26873690 26873710 CCAGCTATCTCAACTACAAGC 59 26873436 26873650 GGCTGTAGGGATAATCATGTG 58 NA Rattus norvegicus 81 Smpd1 ENSRNOG00000017977 ENSRNOT00000024224 2 1 1 80 1 170384064 170384466 CAACTATGGGCTGAAGAAGGA 60 170384507 170384526 GCTATGTTCAGCATCTTGCA 59 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152,ENSRNOT00000048417 3 2 2 80 11 46184986 46185004 TGATGCAGCGAGTATTCAG 58 46185046 46191191 TAAGATCTCCATCCTCATCCT 57 NA Rattus norvegicus 81 Kctd10 ENSRNOG00000047896 ENSRNOT00000073019 3 1 1 93 12 48005834 48006923 CCTACACCAGCAATTCCGA 60 48006979 48006998 TTTATGAACAGGACCCTCCC 59 NA Rattus norvegicus 81 Neil2 ENSRNOG00000010696 ENSRNOT00000014198 3 1 1 84 15 46377581 46377600 TCTGGGTGAATGACTTCTCC 59 46375404 46377534 AAATGGAGTACCAGCCTGG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 2 7 7 80 11 46341094 46341112 TGCAGAGCCGAAGTATCTG 60 46336078 46341050 GTGCGAGATTTACCTGAGC 59 NA Rattus norvegicus 81 Rn60_X_0595.2 ENSRNOG00000051308 ENSRNOT00000076448 3 1 1 60 X 58804733 58804753 GCTTTAGATTCAGGAAAGGCA 59 58804693 58804713 CTACATTCTCAAGAGTCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nbn ENSRNOG00000008580 ENSRNOT00000012377 1 1 1 80 5 29653627 29653648 GATTTAATAGGTCACCATGCTC 57 29653688 29655282 TTGTTGTTTCTGTACCTCCA 57 NA Rattus norvegicus 81 Mcm2 ENSRNOG00000016316 ENSRNOT00000022231 1 1 1 80 4 120830248 120830267 GGGCATGAAGACATCAAGAG 59 120829812 120830206 AACTTTGTGCTTTCCACCTG 59 NA Rattus norvegicus 81 Dnajc19 ENSRNOG00000049819 ENSRNOT00000071944 2 1 1 80 2 120506283 120506783 ATACTAGGTGTAAGCCCTACTG 59 120506824 120506842 GTCTGGGTGGTTTAAGAGC 58 NA Rattus norvegicus 81 Snrpd2 ENSRNOG00000015844 ENSRNOT00000021221 3 1 1 88 1 80057206 80058513 CCTTCACCATGAGTCTCCT 58 80058564 80058583 ACCTGTGTTGAATTCCTCCT 59 NA InUTR Rattus norvegicus 81 Rab9a ENSRNOG00000030443 ENSRNOT00000050018 3 1 1 159 X 29525348 29525366 GAATAGCTCCCAGGACGTC 60 29546256 29546274 GAACTCTTGCCAACTCCAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ndufv2 ENSRNOG00000042503 ENSRNOT00000016965 2 1 1 80 9 113877316 113879089 ATAAACGACGACTACTACGAGG 60 113877257 113877275 TGGAACTTTCCCAGCTCTG 60 NA Rattus norvegicus 81 AABR07002094.1 ENSRNOG00000046802 ENSRNOT00000072667 3 1 1 60 1 66389045 66389066 CATCATATCAAACCACCTGGTC 59 66389086 66389105 CAAAGAGGTCACTGTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glce ENSRNOG00000025372 ENSRNOT00000038641 2 1 1 80 8 67010375 67020009 AACAGTTTATTGCTCCAGAAGC 60 67010316 67010338 GGTCGAATGAGATAATGAAGTCC 59 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 3 2 2 80 1 7312544 7312563 ACTCTAGCCTTGAAAGAGGG 59 7297585 7312507 GTAAGGGCATTGAATATAATCTGGG 60 NA Rattus norvegicus 81 Taar6 ENSRNOG00000016089 ENSRNOT00000021529 2 1 1 60 1 22536351 22536371 CTTGGTGATGATATCCATCCT 57 22536393 22536411 AATGAGGAAGTTGGTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0063.1 ENSRNOG00000048677 ENSRNOT00000071429 3 1 1 60 7 6157869 6157890 CTTGAAGATTTCATGCTCAGAC 58 6157910 6157929 CACTGCACAAACAATCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910595 ENSRNOG00000050717 ENSRNOT00000074413 3 1 1 60 8 43054952 43054972 TATTGATCTCTGCCATTCCAC 58 43054912 43054930 CTCTGCCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca2a ENSRNOG00000008849 ENSRNOT00000011867 1 1 1 88 5 138685645 138685663 CATGAATGCCTGGTTGCTG 60 138685715 138686510 AAAGGTCTCCATCCTGCAC 60 NA InUTR Rattus norvegicus 81 LOC100910567 ENSRNOG00000050494 ENSRNOT00000072617 1 1 1 80 2 150354650 150354669 GTAGATCCTACCCGAATTGC 58 150354712 150364439 AATCTGCACCTGTTGTGTC 58 NA Rattus norvegicus 81 Defb30 ENSRNOG00000038758 ENSRNOT00000059211 3 1 1 86 15 46221751 46223337 GTTCCTCCAGTTAGAAGTGGA 59 46221685 46221703 TACATTCCTGCAATGCCCT 59 NA Rattus norvegicus 81 Gga2 ENSRNOG00000018599 ENSRNOT00000025309 1 1 1 80 1 191966413 191966432 GACTTCTCAAGAGCAACCAC 59 191965902 191966372 TTTCTTGTTCCTCCTTGACCA 60 NA Rattus norvegicus 81 RGD1559904 ENSRNOG00000014664 ENSRNOT00000061385 2 1 1 80 5 25111676 25113200 ATTCAACAACAGGACTGCG 59 25113242 25113262 GCCTGAAATGGAGTAAACCAC 60 NA Rattus norvegicus 81 Olr1345 ENSRNOG00000047633 ENSRNOT00000049347 1 1 1 60 9 99680833 99680852 TAGCCATCATCCTCACTGTC 59 99680792 99680812 AGGAAGTAGTACATGGGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 3 2 2 81 17 39160772 39161327 TTGCCAAGAAGGTTAAACATGG 60 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Mir764 ENSRNOG00000040427 ENSRNOT00000062180 3 1 1 60 X 118123297 118123316 CATGCCTACACATACATGGA 58 118123336 118123357 CAACGAAATCAATCATGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clca4l ENSRNOG00000036877 ENSRNOT00000055362 2 1 1 80 2 250802934 250802955 TAGTTCCCATAACCTGGAAGTC 59 250802679 250802894 CAACTATGACGTCTGCTTGG 59 NA Rattus norvegicus 81 S1pr5 ENSRNOG00000020901 ENSRNOT00000028380 2 1 1 70 8 22269978 22269996 CCTATGTGCTCTTCTGCGT 60 22269926 22269944 AATCCTTGCATAGAGCGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufsp1 ENSRNOG00000051006 ENSRNOT00000073356 1 1 1 60 12 22471624 22471642 TATTCACACTTCACAGCGG 58 22471582 22471600 ACTGAGCATCTGCATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361811 ENSRNOG00000032803 ENSRNOT00000047936 2 1 1 60 X 10431170 10431189 CATCAAGCACTCAAAGAGCA 59 10431210 10431230 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo3 ENSRNOG00000047450 ENSRNOT00000072450 3 1 1 83 4 172951763 172992343 CAGAGACTACCTGAGGCTG 59 172992390 172992408 CGCATCACCATCTCAAAGG 59 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000091063 3 1 3 82 6 2584742 2593685 ATAACAAGGATTCGCAAAGC 57 2593729 2593748 TTCTCTTTCACAACCACCTC 58 NA Rattus norvegicus 81 Il1r2 ENSRNOG00000014378 ENSRNOT00000019415 3 1 1 80 9 46876370 46876390 GGCTAACAGCACGTTTATCTC 60 46876430 46878143 TCATTCTCTGAGTACTGGTGG 59 NA Rattus norvegicus 81 Ppil1 ENSRNOG00000000523 ENSRNOT00000068527 2 1 1 126 20 6863206 6864346 CTACCTGGAGACTAGCATGG 59 6863099 6863117 GATCCTGTGGAACTTGGTG 58 NA Rattus norvegicus 81 Sncb ENSRNOG00000018039 ENSRNOT00000024357 1 1 1 89 17 10385492 10388433 TCTACGTCGGAAGCAAGAC 60 10388642 10388660 CTCCCAGATGAGATGCCTG 60 NA Rattus norvegicus 81 Trpm6 ENSRNOG00000013053 ENSRNOT00000017892 3 1 1 80 1 234560133 234560151 GTACCCAAATGCTGCTGAC 59 234555987 234560091 TGCTGATGATTATCTTCAGCC 58 NA Rattus norvegicus 81 Ppidl1 ENSRNOG00000037230 ENSRNOT00000056255 3 1 1 60 9 121457206 121457225 GGGAAACATGTGGTATTTGG 57 121457248 121457266 TTTCAAGCATCCTTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r80 ENSRNOG00000046199 ENSRNOT00000074905 3 1 1 60 4 88026744 88026762 GTGGTCATTTACTGGGTGG 58 88026781 88026804 CATACATCCATAACAGGATTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 1 1 1 84 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165480 82165498 TAGCTGAACCAAGGAGTCC 59 NA Rattus norvegicus 81 Ucp2 ENSRNOG00000017854 ENSRNOT00000024156 3 1 1 81 1 165511150 165511168 CGGAGATACCAGAGCACTG 60 165511213 165511306 GAGAGGTCCCTTTCCAGAG 59 NA Rattus norvegicus 81 Cecr2 ENSRNOG00000011566 ENSRNOT00000015499 2 1 1 80 4 153306835 153306856 GCAAGAGCAGATGTTAAAGGAG 60 153306895 153308768 CTCCTCTTAGCTCGATCTTCC 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 2 2 2 87 9 9142231 9142252 CAGAAGTGTAAATTCGAGAGGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Glmp ENSRNOG00000019281 ENSRNOT00000026153 1 1 1 81 2 187700451 187700469 CTTCTGTGCCTTCAACCTG 59 187700514 187700632 AAGCATTGACCAGCAAAGG 59 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 2 2 3 80 5 48057255 48058371 AAACGTCAGATGTCATTGGTG 59 48057195 48057213 TCCCGAAAGTCTCAACTCC 59 NA Rattus norvegicus 81 RGD1559600 ENSRNOG00000042232 ENSRNOT00000066597 1 1 1 80 1 189348264 189359694 ATGGGCTACTCAAGATGCA 59 189348202 189348220 GAGTCCAAGTCTCTGAGCC 60 NA Rattus norvegicus 81 Utp18 ENSRNOG00000002644 ENSRNOT00000003582 1 1 1 80 10 81570876 81571280 GGATTAAAGACCAAAGAGCTG 57 81570816 81570838 CTTACTATCTGAGGAGAATGTGG 58 NA Rattus norvegicus 81 Dnajb13 ENSRNOG00000017975 ENSRNOT00000024256 2 1 1 80 1 165521211 165521229 CGAGACCTCTATTTGTCCC 57 165520104 165521167 TTCATTTAGCACCCTTCGG 58 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 3 2 2 80 17 18418143 18420134 CAGTGGGATAAAGGACATCTC 58 18418083 18418102 AGGTCTTCCATTGATGTGTC 58 NA Rattus norvegicus 81 Siah2 ENSRNOG00000013703 ENSRNOT00000018488 2 1 1 80 2 148875515 148891254 TTTCCCTGTAAGTATGCCAC 58 148875454 148875474 TTCACAGATGTCTTCATGCTC 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875,ENSRNOT00000076661,ENSRNOT00000087153 2 3 4 88 1 216379934 216379952 GTTTGCACTGAAGGTCCAG 59 216380004 216381568 TCCATGCAGTCTGGATGAG 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076526 3 1 4 99 1 216295152 216295170 GATGCTAGCTCCTGAGTGG 60 216295232 216335844 AGAACAATGAGGAAGCCCTC 60 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 1 2 2 80 10 37290994 37291014 CAAGAATGGGAGAAAGGTGTG 59 37286560 37290952 TAGTGGTGGGAGGATCCTC 60 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 3 2 2 80 12 2095651 2095669 CGAGTACCTTCGTCCATCC 60 2095709 2096454 TGGTAACCCACATCATAGATCTG 60 NA Rattus norvegicus 81 Sspo ENSRNOG00000025848 ENSRNOT00000035906 1 1 1 80 4 78091868 78092006 ATCCCTGTTCAGTGAATGC 58 78092050 78092068 ATGGAGCAAAGATTGGCTG 59 NA Rattus norvegicus 81 Msln ENSRNOG00000019445 ENSRNOT00000026395 1 1 1 80 10 15121871 15122135 GGACACAGAACAGAAAGCC 59 15121809 15121831 TCCCAATTCTGGTAGAAGATGAG 60 NA Rattus norvegicus 81 LOC100361637 ENSRNOG00000048099 ENSRNOT00000066802 2 1 1 94 15 29903540 29903711 AATACTCAGAAGGAGCAATGGA 59 29903467 29903485 GATAGGTGCAGTTCAGCAC 59 NA Rattus norvegicus 81 Clgn ENSRNOG00000003755 ENSRNOT00000005071 3 1 1 80 19 24575601 24575620 GCAGAAACTATAGAAGGGCA 57 24575661 24576521 CTCATCAGCATCCTTCATCTC 58 NA Rattus norvegicus 81 Pask ENSRNOG00000016888 ENSRNOT00000022748 1 1 1 80 9 100456176 100458429 CATCTTCCGACAACTGGTG 59 100456114 100456135 ATGTTCTCATCCTTGATGTCTC 58 NA Rattus norvegicus 81 Pask ENSRNOG00000016888 ENSRNOT00000022748 2 1 1 80 9 100469229 100469250 CAATTTATGGCATCAACCACAG 59 100467729 100469188 AAGTGATGTTCTTGCCCAG 58 NA Rattus norvegicus 81 AABR07005886.1 ENSRNOG00000053539 ENSRNOT00000091049 2 1 1 93 1 204092253 204096264 TCCTACTTCGTGGAGTCAG 58 204096320 204096339 TGGCCTTGAACTTGAAAGAG 58 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 3 1 1 80 1 228408716 228408735 CTACAGCCTCAACTTGTGGA 60 228408776 228412865 TTAAAGTTTACCGGCATTGGG 59 NA Rattus norvegicus 81 Olr733 ENSRNOG00000056633 ENSRNOT00000087245 2 1 1 60 3 78974176 78974194 ATGGACGGGAGGATTTGTG 60 78974134 78974154 GAAGGGCAAAGGAAAGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc10 ENSRNOG00000006943 ENSRNOT00000009098 1 1 1 80 10 38664161 38664180 CGAAATGAATCCAAGAGCTG 57 38664223 38668070 TTGCTTATTGGCTTCACCT 57 NA Rattus norvegicus 81 Atp8a2 ENSRNOG00000008053 ENSRNOT00000011451 2 1 1 80 15 40351471 40352031 TACTACAGCAAATCCCAGAC 57 40351410 40351431 CTGCAATCGTTAGAATGATGAC 58 NA Rattus norvegicus 81 Trmt1 ENSRNOG00000002914 ENSRNOT00000003941 2 1 1 80 19 25804581 25804830 AGGGAATCCAGATCAAGGTC 59 25804871 25804891 CTGTTTCCTCCTCTTGATCAG 58 NA Rattus norvegicus 81 LOC100360679 ENSRNOG00000033152 ENSRNOT00000046010 3 1 1 60 10 104521921 104521939 AGAAGGACGTGAAGGATGG 59 104521879 104521897 AGCTTGTTGTCTAGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad51 ENSRNOG00000037302 ENSRNOT00000056432 2 1 1 80 3 110941245 110941263 CCATGTTTGCTGCAGATCC 60 110941307 110941877 TCCTCAGGTATAGCCTGGT 59 NA Rattus norvegicus 81 Olr135 ENSRNOG00000043392 ENSRNOT00000067478 2 1 1 60 1 169116578 169116596 CTCTGCATCGTGACTTCCA 60 169116617 169116638 GCACATAAGAGACAACAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 1 2 2 80 19 26080492 26080641 CTGAAAGTAGCAGACTCAAAGAC 60 26080434 26080452 AAAGTCTCCGTCCTCTTCC 59 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 3 2 2 80 15 42862345 42862363 TGCCAGAAGACTTCATGGA 59 42860340 42862301 TGTAGTCATTCCGGAGCTG 59 NA Rattus norvegicus 81 RGD1565844 ENSRNOG00000004120 ENSRNOT00000020999 2 1 1 80 X 32496308 32496327 TGAACATGACTAGACAGCGT 59 32496370 32496496 CCAGCTGAAGATTCACTGG 58 NA Rattus norvegicus 81 AC130940.1 ENSRNOG00000046229 ENSRNOT00000068212 2 1 1 131 15 33637413 33637432 ATTTGAGTGTCCTGAGGACC 60 33637866 33637884 GAAGGACGAGGAGATGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Cd276 ENSRNOG00000033608 ENSRNOT00000042681 2 1 1 124 8 63332704 63335215 CCTTACAGGAGCTGTGGAG 60 63332598 63332616 TGAGGTTGAGCTGTCTCAG 59 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 3 2 2 80 10 91019095 91019113 AACAGGATGTGTTCCAGCA 60 91018417 91019052 CATAGGCAAACACTGAGCAG 59 NA Rattus norvegicus 81 Jtb ENSRNOG00000016379 ENSRNOT00000064752 1 1 1 80 2 189592238 189592469 CGAGGAGAAGCTATCAGTGAG 60 189592510 189592529 GGAGTACACTCTTCGGTCAC 60 NA Rattus norvegicus 81 Psme2 ENSRNOG00000019246 ENSRNOT00000026279 3 1 1 80 15 34268636 34268752 CAAGGATGATGAGATGGAAACC 59 34268490 34268509 AGAAGCTTCTCATTCCCAGG 60 NA Rattus norvegicus 81 Ube2d4l1 ENSRNOG00000029497 ENSRNOT00000045603 1 1 1 60 X 83570579 83570600 TCCAAATATCAACCGTAAGGGA 59 83570621 83570639 TGGTGACCACTCAGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl19 ENSRNOG00000006968 ENSRNOT00000009308 2 1 1 80 4 112705238 112705256 TTGCATCAAGCGATCAGGA 60 112703842 112705195 CAAATCTCCACACCTTGTCC 59 NA Rattus norvegicus 81 Zfp869 ENSRNOG00000033351 ENSRNOT00000015611 2 1 1 80 16 21447024 21447485 GCCTGAAGTAAATCTAAGGGAC 59 21447522 21447544 GGCTTCTCTTCATATTCCTTGTG 60 NA Rattus norvegicus 81 Pax9 ENSRNOG00000008826 ENSRNOT00000011802 1 1 1 80 6 77608968 77608986 CGTACCCTCTGTGAGTTCC 60 77609029 77609050 TGCTTATAGGACGTACCCTG 59 NA Rattus norvegicus 81 S100vp ENSRNOG00000028310 ENSRNOT00000023564 3 1 1 84 2 190629350 190631570 TTCTAAAGGCAATGGATGAAGC 59 190631612 190631633 ATGTCCCAAATCTCATCAAAGG 59 NA Rattus norvegicus 81 LOC100912272 ENSRNOG00000050096 ENSRNOT00000070889 2 1 1 60 11 28597801 28597821 GTTGCTACGTTCCAAGTTACC 60 28597761 28597779 CCATAGGTCAGATAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910293 ENSRNOG00000048474 ENSRNOT00000073226 3 1 1 60 2 46067052 46067075 CATCTCATATGTTGGGTGTATGAC 60 46067091 46067112 CTCAGAAATGACACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 1 1 2 80 5 74972260 74981655 GATGATAGTAGTGTCCTGGAGG 59 74981696 74981714 ATAAATCCCTGCCTCCCAG 59 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 2 1 2 80 5 74972261 74981655 ATGATAGTAGTGTCCTGGAGG 58 74981697 74981715 CATAAATCCCTGCCTCCCA 59 NA Rattus norvegicus 81 Gna12 ENSRNOG00000001235 ENSRNOT00000001654 3 1 1 80 12 15890525 15934049 CAACATCCTTAAGGGCTCGA 60 15934091 15934110 TTCTCGTTCTCAGAGTGCTG 60 NA Rattus norvegicus 81 Ripk1 ENSRNOG00000017787 ENSRNOT00000023962 1 1 1 80 17 31560581 31560601 ACGAAGGTGTAATACACAAGG 58 31558746 31560542 CAAGATCGGCTATCTTAATGTG 57 NA Rattus norvegicus 81 Cav2 ENSRNOG00000057713 ENSRNOT00000080271 3 1 1 80 4 44574082 44578623 GCACATCTGGATCCTAATGC 59 44578664 44578684 GTCACACTCTTCCATATCGTC 58 NA Rattus norvegicus 81 AC120310.1 ENSRNOG00000045684 ENSRNOT00000071131 1 1 1 80 17 14711646 14711854 TGTCTATACCTCCTATTCTCTACTC 58 14711589 14711610 CTTGTTGTTCTGAAGAATCACC 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 1 2 2 80 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013123 6013902 ATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432,ENSRNOT00000077624 3 2 2 80 4 119916768 119924482 ACTTGTTACCATGCAGATCTG 58 119916708 119916726 TCTGCACCTCTGTAGAAGG 58 NA Rattus norvegicus 81 Slc18a1 ENSRNOG00000011992 ENSRNOT00000016193 2 1 1 80 16 22374171 22374192 GTGATGTATGAATTTGTGGGCA 60 22374233 22374459 AAGTTGGAGAGCTCCATCC 59 NA Rattus norvegicus 81 Mrs2 ENSRNOG00000017545 ENSRNOT00000023787 1 1 1 80 17 42069744 42069762 AGACTTGAGGTTTCAGCAC 58 42069806 42073176 ACAGCCTTCAAGTACTCCA 58 NA Rattus norvegicus 81 LOC100363943 ENSRNOG00000033056 ENSRNOT00000050658 3 1 1 82 7 15821386 15821578 ACCTTCGCAAACATGAACG 60 15821322 15821340 GCTGGAATAGGTGAAGGCT 60 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 2 2 2 84 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613274 AGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Wee1 ENSRNOG00000010017 ENSRNOT00000013362 2 1 1 80 1 174772347 174775386 GAATGAATACTGTAATGGTGGG 57 174775425 174775445 TCTGCTTCAGTAAAGTAGCTC 58 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 1 2 2 86 1 247871969 247876370 TATCACTGCTGAAGAGGCC 59 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Sox30 ENSRNOG00000006098 ENSRNOT00000007978 1 1 1 80 10 31075253 31076904 CCTCAGATGCAGGAATACC 57 31076946 31076966 CCATAAATGCATTCATGGGTC 58 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000049464 ENSRNOT00000071633 2 1 1 80 1 258811743 258820886 ATACCGAAGGGAACAGCAG 60 258811681 258811699 AAACATCTCTGGGTTGGGA 59 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000071273 3 1 2 108 15 18399774 18411081 GTAGAGAACCTCCATCGCT 59 18411151 18411171 GATGAGCTCTGAATTCCACTC 59 NA InUTR Rattus norvegicus 81 Olr145 ENSRNOG00000048582 ENSRNOT00000072668 2 1 1 60 1 169269647 169269665 TCATACTTCGTTCCGTGCT 59 169269605 169269624 GTGTTCAGAGTCTTCAGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910474 ENSRNOG00000008521 ENSRNOT00000011278 1 1 1 60 12 33182671 33182693 GAAATCCGTCATATCCTAGTCAC 59 33182633 33182653 GCATCTCTACTTCTTCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrr1 ENSRNOG00000004216 ENSRNOT00000005595 3 1 1 80 6 91466087 91466106 ACCAAATTTGTGGACGAAGG 59 91466148 91468534 AGGATTGGCCTTACTCAGAC 59 NA Rattus norvegicus 81 LOC100912610 ENSRNOG00000033415 ENSRNOT00000044186 2 1 1 114 5 77999068 77999410 ATGTGGACAAGCTCAATGG 58 77998972 77998990 CCAAGACATCGATGTGCTG 59 NA Rattus norvegicus 81 Napsa ENSRNOG00000019854 ENSRNOT00000026992 2 1 1 80 1 100584490 100584595 TCCAAGTTCATGAACACCC 58 100584639 100584657 CGTGTCAAAGACAACTGTG 57 NA Rattus norvegicus 81 Sipa1l3 ENSRNOG00000020703 ENSRNOT00000042207 3 1 1 80 1 87320489 87320508 GACCACATCTTTCTACAGGC 58 87314586 87320447 ATTGGTCATCACCTTTAGCC 58 NA Rattus norvegicus 81 Cmss1 ENSRNOG00000027888 ENSRNOT00000031464 1 1 1 80 11 45325064 45325600 ACATAAAGGTCCAGGAGCA 58 45325643 45325662 CTTTGATTCTCCCTGGAGTC 58 NA Rattus norvegicus 81 Ppl ENSRNOG00000002930 ENSRNOT00000004026 3 1 1 80 10 10670551 10671146 GAGAAACTGGACAAGCTGAG 59 10671189 10671207 GATGTTGTGTTGCTCCACC 60 NA Rattus norvegicus 81 Prx ENSRNOG00000018369 ENSRNOT00000024771 2 1 1 118 1 84319901 84319919 GTCTCCTTCTGCTTGAAGC 59 84320001 84320598 CTCTGGATGTTCAGCTTGG 58 NA Rattus norvegicus 81 Mir105 ENSRNOG00000059896 ENSRNOT00000085343 1 1 1 60 X 152585584 152585602 AGTCAAGTGCTCAGATGTC 57 152585542 152585560 AGCACATGCTCAAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc46a2 ENSRNOG00000017324 ENSRNOT00000023588 3 1 1 80 5 77170935 77172244 TCTATATTGCCCGAGCTGTC 60 77170874 77170894 CCTTTACAAGCTTGGACATGG 60 NA Rattus norvegicus 81 LOC102549011 ENSRNOG00000050178 ENSRNOT00000072727 1 1 1 67 X 51792409 51792430 AGCTGCCTACAAATTATATCCC 58 51792184 51792202 TTCCACGTTTGTTGGTCCT 60 NA DesignNoJunction Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000072928 1 1 2 80 3 134441437 134441456 GAGTGTGAACTTCCTGAAGG 58 134441497 134441519 AGGAAGGTCAGTATTACATGC 58 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000045937 ENSRNOT00000075045 2 1 1 82 X 43015833 43015851 CTCAGCAACATGAAGCCAG 59 43014206 43015787 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000057073 3 1 2 123 1 85299512 85299530 ACTTACGTCCAGCTCTGTG 60 85292550 85299427 AGAAGGGATCATCCTGTAGAC 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 2 3 3 80 10 77769638 77769657 GAGCATTGTTTCCACATGTG 58 77769700 77771214 ACGGAGATTTAACCATGGG 57 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 1 2 2 80 15 41316182 41316200 GCATTCAAGGTCCTACCTG 58 41315814 41316140 ACTTGCTTTACAGGACAAGTG 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 2 2 2 80 15 41315817 41316142 GTCACTTGTCCTGTAAAGCA 58 41315756 41315774 GGACACAGTTTCCAGATCG 58 NA Rattus norvegicus 81 Ms4a8 ENSRNOG00000020939 ENSRNOT00000063879 2 1 1 80 1 227139731 227139752 AGACATCAGTATCTCAGGAGGA 60 227137309 227139691 ATAGCCACACCTGTACTCAC 59 NA Rattus norvegicus 81 Ipo13 ENSRNOG00000019758 ENSRNOT00000026844 3 1 1 80 5 136737550 136737569 ATCCTGAAGAACCTGCACTC 60 136737329 136737511 GGAGGGATTAGGTATCTCTTCTG 59 NA Rattus norvegicus 81 Celf6 ENSRNOG00000052224 ENSRNOT00000082840 2 1 1 80 8 64426139 64426246 AAGAGAAGGTCCTGAAGGC 59 64426289 64426308 AATGTCTGTATGAGTTCCGC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 2 2 2 80 9 53475060 53475081 CTTTCAGTCCATGGTCAATTCC 60 53465072 53475020 AGGAAACAGTCCTATTCCCG 59 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 3 1 1 86 16 70906204 70906223 CATCCTCCTCATCCTCTACC 59 70906270 70907481 AGGATAGAATTCATCCCTGGA 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 1 2 2 80 20 5530004 5530022 TTTCAGACACTCCCAAAGG 57 5530066 5530179 TCCCTGAAATGAAACGGTC 58 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 2 2 2 82 20 248553 248572 TGTGAATTGTACTTGGCACC 59 250938 254199 ATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291,ENSRNOT00000011770 2 2 2 80 4 174761840 174761859 AGTCCTCAACGATAGCTTCC 59 174761902 174764366 CACTTCTCGGTCTTTCCGT 60 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048445 ENSRNOT00000074937 1 1 1 60 2 115125994 115126013 ATTGATCTCTGCCATTCCAC 58 115126036 115126054 TCTCTGCCACAAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp958 ENSRNOG00000030410 ENSRNOT00000050885 3 1 1 88 12 5487195 5490652 AGAAGACACGGAAGACCTG 59 5487125 5487143 CTACTGCGATGTGCAAAGG 59 NA Rattus norvegicus 81 Rrp1 ENSRNOG00000001203 ENSRNOT00000001597 1 1 1 80 20 10989916 10989935 TAAGTAGGGCTGACCTTGAG 59 10989978 10990703 CGTAGTCAAACTGGAGGAC 58 NA Rattus norvegicus 81 Olr749 ENSRNOG00000049966 ENSRNOT00000051083 2 1 1 60 3 102472092 102472111 CTGAACCCTGCCATTTACAC 59 102472132 102472152 TTAGTTTCCTCATTGCCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 1 1 1 80 8 42448166 42453302 AAGAAGCGAGATAGTTTGATGG 59 42453342 42453361 CTTTGAGGCGTTCACTTCTG 60 NA Rattus norvegicus 81 RGD1311458 ENSRNOG00000013721 ENSRNOT00000018473 2 1 1 80 11 60925986 60926004 TGAAGCACTTAGGGCTACG 60 60924458 60925944 TATGGAGAACCCATAACCTGC 60 NA Rattus norvegicus 81 Rn60_20_0009.4 ENSRNOG00000053949 ENSRNOT00000092227 1 1 1 60 20 1547604 1547622 CTTTGCTTCATCACCACCA 58 1547562 1547580 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsj ENSRNOG00000000001 ENSRNOT00000055633 3 1 1 60 2 230661782 230661801 GCTGATCCATATGAGAGGGT 59 230661824 230661842 GCAACTTCTTCACAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc47 ENSRNOG00000009006 ENSRNOT00000012533 2 1 1 80 10 94402336 94403686 GATGCAGATACCCAGGAGG 59 94402274 94402295 ATCAGGTTTGTCTTCATAACCC 59 NA Rattus norvegicus 81 Morn2 ENSRNOG00000030319 ENSRNOT00000047356 1 1 1 81 6 2971869 2972590 GAAAGATGACAAGATGAATGGC 58 2972630 2972650 CATGTTGTCCTTAAACTGTCC 57 NA Rattus norvegicus 81 Morn2 ENSRNOG00000030319 ENSRNOT00000047356 2 1 1 81 6 2971869 2972590 GAAAGATGACAAGATGAATGGC 58 2972629 2972650 CATGTTGTCCTTAAACTGTCCT 59 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 1 1 1 62 10 40195362 40198426 GCAGCCAGAGTAAAGATAAACG 60 40195321 40195340 TTTCTCTGGAGATGTCTCGT 58 NA DesignNoJunction Rattus norvegicus 81 Kcnk6 ENSRNOG00000049868 ENSRNOT00000032394 3 1 1 83 1 88169594 88169835 GCTTGTCACAGCATACCTC 59 88169529 88169547 CCATGGAGGTCAGAAACAC 58 NA Rattus norvegicus 81 Cstf3 ENSRNOG00000012089 ENSRNOT00000016318 2 1 1 80 3 94603144 94605767 TGGGCTACAAGGATGTCTC 59 94605810 94605829 GAACAGGCACTATGGAAGGA 60 NA Rattus norvegicus 81 Igsf6 ENSRNOG00000017277 ENSRNOT00000023262 3 1 1 80 1 191003875 191007423 TTCTTCAAGTTGGTGTGGTG 59 191003814 191003832 TCTGAGACGTGTAGTCCAC 59 NA Rattus norvegicus 81 Olr767 ENSRNOG00000045977 ENSRNOT00000047051 2 1 1 60 3 102773651 102773672 GTCATCCTGATCTTAGTAACCA 57 102773612 102773632 CCAACAAGAAGTACATGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss22 ENSRNOG00000039698 ENSRNOT00000060888 2 1 1 92 10 13373190 13373355 GCTTTAGCAGCAATATGGAC 57 13373117 13373136 CTACTTTCTGAGACCTTGGG 57 NA Rattus norvegicus 81 Gchfr ENSRNOG00000012290 ENSRNOT00000016458 2 1 1 93 3 110975989 110977401 GATCCGTATGGAAGTGGGT 59 110977458 110977476 CAGGACTCGTCTCTTGGAG 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 2 2 2 83 3 44081639 44084950 TTTCCAAGAAGGGCATCCA 59 44081574 44081595 TGGACAATTCTTTCCTTCTGTC 59 NA Rattus norvegicus 81 Tmed1 ENSRNOG00000008037 ENSRNOT00000061009 2 1 1 82 8 22541850 22541868 GGAGGAGGTAGAAGGTTGG 59 22541274 22541808 CTATGGATTCCTTGATGTCTTCC 59 NA Rattus norvegicus 81 Espl1 ENSRNOG00000012835 ENSRNOT00000017314 1 1 1 80 7 143913651 143915291 AGTCTTCCACAGAGTTTGGT 59 143915334 143915352 CCTTATGCGTCCCTTTCTG 58 NA Rattus norvegicus 81 Inpp5a ENSRNOG00000017635 ENSRNOT00000054890 1 1 1 80 1 211826252 211826270 CACTGCCAAGAATTCGGAG 59 211826312 211830428 ACTGGACAGTAGTTCCTTGAC 60 NA Rattus norvegicus 81 Nfkbid ENSRNOG00000025111 ENSRNOT00000029719 3 1 1 82 1 88888019 88888127 AGACTTCGAAGGCCTTACC 59 88888172 88888191 TCCTCGGACACATAGTAGGT 60 NA Rattus norvegicus 81 Cntnap5c ENSRNOG00000043185 ENSRNOT00000067198 3 1 1 80 13 7464031 7531102 AAGTCACAGAGACTCTTGGG 59 7531145 7531163 GGACTGAAGAAAGGCATCC 58 NA Rattus norvegicus 81 Olr1199 ENSRNOG00000011563 ENSRNOT00000015369 3 1 1 60 8 40285723 40285746 CTTTCTAGGTTTCTACATGGTGAC 59 40285762 40285783 TCCTATTAAGGAGATCAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgrp2 ENSRNOG00000021098 ENSRNOT00000028646 3 1 1 80 1 221786641 221786660 CTTCGTACACAACTTCCAGG 59 221786703 221786922 TAGATGCCCAGGATCAGAG 58 NA Rattus norvegicus 81 Agbl5 ENSRNOG00000008612 ENSRNOT00000011635 2 1 1 80 6 26854289 26854309 CTACGAGTTCAACGTATGGAC 59 26854020 26854249 CTGAAGTAGAACCATGACCTG 58 NA Rattus norvegicus 81 Cpm ENSRNOG00000034134 ENSRNOT00000044413 3 1 1 80 7 60703148 60707083 GCACCTAGGTGTAAAGGGT 59 60707127 60707145 TTTCTGTCTTGGGCTTCCA 59 NA Rattus norvegicus 81 Umodl1 ENSRNOG00000001157 ENSRNOT00000050744 3 1 1 80 20 9693621 9693640 AACAACTCCATCGTCTACCT 59 9693680 9696788 ATTGCAGTTTATTCTGCAGGAG 59 NA Rattus norvegicus 81 AABR07054522.2 ENSRNOG00000058577 ENSRNOT00000073941 3 1 1 90 3 158964363 158964383 ATTCCTCAGTGATTACACCCA 59 158964551 158964569 AAGTAGAGCTGGGTCATGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912399 ENSRNOG00000013177 ENSRNOT00000017968 1 1 1 80 2 43338532 43338910 ATACTTAAAGCTGGATCCATCG 58 43338473 43338493 GTTTGATTCAGCTTGGTTTCC 58 NA Rattus norvegicus 81 Doxl1 ENSRNOG00000023612 ENSRNOT00000032300 1 1 1 84 4 78566724 78566956 AAGATAAGGATTTGGTGGCC 58 78567003 78567021 TTAGGTGTGGTCATGTTGG 57 NA Rattus norvegicus 81 Olr1388 ENSRNOG00000046425 ENSRNOT00000041536 1 1 1 60 10 34564410 34564428 CATGATGCACCCTGTTCTC 59 34564452 34564470 CAAGAAGCCTCCTACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk1b ENSRNOG00000027380 ENSRNOT00000004315 3 1 1 80 11 64537333 64537351 TCTGCCTCTTCTGCTTGTC 60 64537394 64539729 TGATGAAGTACGCCAAGAGG 60 NA Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 3 1 1 60 20 1515615 1515633 CCACCTACCTGAAACCTCC 59 1515573 1515592 ATAACAGCAGCTACCACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1407 ENSRNOG00000047056 ENSRNOT00000047984 1 1 1 60 10 36499448 36499469 ATGTTCTTGTGGATGTACTTGG 59 36499490 36499508 TGATCGCCAGGATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grb2 ENSRNOG00000037360 ENSRNOT00000056528 2 1 1 79 1 98046702 98046720 GATGAGCTGAGCTTCAAGG 58 98046641 98046662 GCCTTATACCAGTTCTGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 1 1 2 235 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116964751 116964769 CAAGGCAGATTGCTTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 3 2 2 80 19 30880743 30883016 TGAACAAGTTACGGAAAGATGC 60 30883056 30883075 AGGAACTGGATCTATCGCTC 59 NA Rattus norvegicus 81 Pigf ENSRNOG00000015325 ENSRNOT00000020600 1 1 1 80 6 10588666 10588686 ACCTTGTCTGTGTTTGTTAGG 59 10577742 10588626 TCCCAAACAGATGTAACTCCA 59 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 2 1 1 104 12 11734974 11734995 CTACAGTTCCATGCTGGAG 58 11735063 11735081 GTTATCCTCCAGGTGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Evi2b ENSRNOG00000014125 ENSRNOT00000018898 2 1 1 60 10 66857498 66857517 ATCATTCCCAGATCAACGAG 58 66857457 66857477 GACAGAGGCACACTAAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr94-ps1 ENSRNOG00000000767 ENSRNOT00000000994 1 1 1 60 20 1875156 1875174 CCCACGCATAGTTACAACC 59 1875198 1875216 TCACCACCGTGTAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab12 ENSRNOG00000019295 ENSRNOT00000026177 2 1 1 80 9 114685854 114685874 TGAGATCTTTCTGCTCGTG 57 114684115 114684135 AGGATGCTATTGGATAACTCG 58 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 3 2 2 81 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238663 TATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202,ENSRNOT00000051910 1 2 2 80 2 61407792 61408034 CACAGGCAGTATATTGGCAC 59 61407731 61407750 CGTAACATAAGCATCCACCG 59 NA Rattus norvegicus 81 Bcam ENSRNOG00000029399 ENSRNOT00000045574 1 1 1 80 1 80676871 80677046 GCGAGGAGATACTACTCCAG 59 80676810 80676829 CTGGTGACTTTCAAGGTCAG 59 NA Rattus norvegicus 81 S100a10 ENSRNOG00000023226 ENSRNOT00000035240 3 1 1 117 2 193898570 193898588 CATGGAAAGGGAGTTCCCT 59 193900909 193900927 TAGAAAGCTCTGGAAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 3 1 2 82 20 1814894 1815075 AGTATGAAAGCACTGAGTGTG 58 1814832 1814850 ATTCCACTGTGGTACTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Kdm4d ENSRNOG00000045905 ENSRNOT00000071532 2 1 1 60 8 13511924 13511942 AGAGATGACAGAAGTCCCA 57 13511882 13511902 CTATTAAGTCTCCAGTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a16 ENSRNOG00000012053 ENSRNOT00000016499 1 1 1 61 2 189927865 189927883 AAGAGCTGAACCACATGCT 60 189928080 189928098 CTGGATGAGCTTGTCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911479 ENSRNOG00000046634 ENSRNOT00000072854 2 1 1 60 10 44934140 44934161 TGAAGACACATCCCAATATGAG 58 44934181 44934200 TATCAGCACAAGGACAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prm3 ENSRNOG00000002564 ENSRNOT00000003451 1 1 1 60 10 4951783 4951802 GTCAAGACAACTTCTCCCTG 58 4951824 4951843 TCATCTTCCTCATCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 3 1 2 80 2 60563579 60564086 CAGGATGCTGATTTAAAGACC 57 60562468 60562487 AGTTCCACTTCTTTCTGAGC 58 NA Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 2 1 1 82 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190050 63190069 GTTTGAACACAGGGATGCAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC688335 ENSRNOG00000049188 ENSRNOT00000073660 3 1 1 85 8 38685464 38686113 GCTTCCTACAAGCTCTGAC 58 38686159 38686180 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000024067 1 1 2 81 15 51757119 51758432 CAGATGGCTACAGAGAATGTG 59 51758474 51758493 GGAAAGAGCCCGAATAAGAG 58 NA Rattus norvegicus 81 Fam160b1 ENSRNOG00000017225 ENSRNOT00000023247 2 1 1 80 1 278220464 278221264 GTGATTGTCAGGGTTGTTGG 60 278221305 278221325 TCTGACTAAGAGAAGCTTGGG 59 NA Rattus norvegicus 81 Ypel3 ENSRNOG00000019721 ENSRNOT00000026755 1 1 1 81 1 198211894 198211912 CTGACAGGTCTTCATGCTG 58 198211955 198213349 CAAAGGCTTGCTCATATTTCC 58 NA Rattus norvegicus 81 Olr1350 ENSRNOG00000030424 ENSRNOT00000052361 3 1 1 60 9 99753430 99753448 TCTCCTTGTTGGCTACCAC 59 99753472 99753490 ATGAAACGGTCATAGGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pygl ENSRNOG00000006388 ENSRNOT00000009183 1 1 1 80 6 92607707 92608160 TTTCCAGATCAGGTAGCCA 58 92607645 92607665 GTCCACAAAGATCCTCATCAG 59 NA Rattus norvegicus 81 Fam170a ENSRNOG00000015834 ENSRNOT00000039379 3 1 1 92 18 45026126 45026924 ATCCATCGTAGTAAGGGAACC 59 45026978 45026996 AATAGTGGCCTCTCCTTCC 59 NA Rattus norvegicus 81 Srxn1 ENSRNOG00000031167 ENSRNOT00000041456 2 1 1 80 3 147619922 147620539 TCATCCAGGATGTAAGCTCTG 59 147621127 147621145 TACAGTCCACCAAGGAAGC 59 NA Rattus norvegicus 81 AABR07066994.1 ENSRNOG00000042034 ENSRNOT00000064584 1 1 1 60 9 25203648 25203667 ATGAATCTGACATGCTGCCT 60 25203687 25203708 GCTTCACCATGTTCTTAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorbs3 ENSRNOG00000008829 ENSRNOT00000012056 2 1 1 80 15 51865089 51868770 TTATGTGGAGGTTCTGCCTG 60 51865028 51865046 GCATCTCCATACTCCAGCA 59 NA Rattus norvegicus 81 Catsperd ENSRNOG00000048818 ENSRNOT00000071207 1 1 1 80 9 10422218 10423017 GTGTATCTAGGGCAGAGGG 59 10422156 10422176 CATTGACTTCGGAATGGTGAG 59 NA Rattus norvegicus 81 Lgalsl ENSRNOG00000005464 ENSRNOT00000008274 1 1 1 80 14 105054353 105054518 TCCCACGACTGATAGTTCC 59 105054291 105054310 CGATGCCCATCACTAATACC 58 NA Rattus norvegicus 81 Lama5 ENSRNOG00000053691 ENSRNOT00000081226 3 1 1 80 3 175559777 175560031 AACCTGTCTGGCATTATCC 57 175559715 175559733 GCTGCTATAGGCATTGGAG 58 NA Rattus norvegicus 81 Pcdhgb8 ENSRNOG00000027220 ENSRNOT00000026967 3 1 1 64 18 30911846 30911865 CAGTGAGTGTCACTGAGGAG 60 30911892 30912589 TGCTTGGTGGTTAGAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911689 ENSRNOG00000046670 ENSRNOT00000041899 2 1 1 87 1 99324971 99325843 CCACTGCTATAGCAACTATTACC 59 99324906 99324925 GTTGACAAACCGGTACTGAG 59 NA Rattus norvegicus 81 Fads6 ENSRNOG00000021380 ENSRNOT00000029001 3 1 1 82 10 103835423 103836217 AGCTCTTGAGCATTTGAGG 58 103835359 103835377 ACTGAGAGTAAAGGCCCAG 59 NA Rattus norvegicus 81 Mthfd1 ENSRNOG00000005602 ENSRNOT00000008374 3 1 1 80 6 99317671 99317689 AAGGTCTTACTGTCAGCAC 57 99317731 99318986 TGTTGGAGTAATTCCAGTCAC 58 NA Rattus norvegicus 81 Mrgprx1 ENSRNOG00000037156 ENSRNOT00000056081 3 1 1 60 1 104023989 104024008 GACCAGACTGTATGTGACCA 59 104023948 104023966 GGGAAGACAGCAGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lefty2 ENSRNOG00000003263 ENSRNOT00000004354 3 1 1 74 13 99216156 99216174 GGTCACCATTGAATGGCTG 59 99216212 99216426 GACACGAGCCTAGAATCGA 59 NA DesignRelaxed Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 2 2 2 88 2 94693892 94694168 AAAGACATTCCCTGGTGCA 60 94693822 94693840 TATTCCAACACTGGCTGCT 59 NA Rattus norvegicus 81 Ssty1 ENSRNOG00000049619 ENSRNOT00000071530 3 1 1 60 3 96552467 96552488 ACCTACGAGAAAGATACAGTCC 59 96552506 96552527 TACCTTCTGTGTAATCATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prmt2 ENSRNOG00000001297 ENSRNOT00000050531 1 1 1 80 20 13196884 13200033 GGGACTCTGAAACTTCACCT 59 13200075 13200094 CTTGTTCTGCAGGATGACAC 59 NA Rattus norvegicus 81 Cxcr6 ENSRNOG00000006319 ENSRNOT00000008294 1 1 1 60 8 132870268 132870287 GGCTTATCTGTCAGTTCCAC 58 132870307 132870328 GTCATCTGTAGAACAAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thsd7b ENSRNOG00000003878 ENSRNOT00000005212 1 1 1 80 13 46885792 46888105 ACTGTGAGGAGCGTAATCTG 60 46888148 46888166 AGAGCTGACAGTTGACCAC 60 NA Rattus norvegicus 81 NMS ENSRNOG00000038979 ENSRNOT00000059587 3 1 1 80 9 45613284 45613931 CTAAGAAGGATCCTACCACCAG 60 45614682 45614703 GGACTTTGTCAGTGTATCTTCC 59 NA Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000065194 3 1 2 80 X 63166089 63177788 GGACTACCTTATGATCTCTTTGGA 60 63166032 63166053 GTTTCGTTGTCCATAGTCAGTC 60 NA Rattus norvegicus 81 Brinp1 ENSRNOG00000005561 ENSRNOT00000007578 1 1 1 80 5 84989325 84997296 CTACATTGGGAGGAGAGGAG 59 84989264 84989283 TTTGGGTAGCATTTCCTGAC 58 NA Rattus norvegicus 81 Cdip1 ENSRNOG00000003328 ENSRNOT00000004999 3 1 1 232 10 10986706 10986725 TTATCCAGGAGGTCCTACAG 58 10987160 10987778 GAGGAGGGTAGAAACCTGC 60 NA DesignRelaxed Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 2 2 2 80 17 45445205 45445223 TATGCAGGAAAGCACATCC 58 45441705 45445162 CAATGTGTTCAGTTCAGGGT 58 NA Rattus norvegicus 81 AABR07012314.1 ENSRNOG00000043111 ENSRNOT00000045938 1 1 1 84 2 192978178 192978196 TCTGGATGCTGTAGCAGTG 60 192978070 192978088 AGCAATCTCCAGACTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc4a2 ENSRNOG00000014347 ENSRNOT00000019666 1 1 1 80 4 7264912 7265023 AGCGAGAAATGAAATGTCTGG 59 7264852 7264870 TCTCGTTGTACTCGTCCAC 59 NA Rattus norvegicus 81 Mycbp ENSRNOG00000017166 ENSRNOT00000023354 1 1 1 83 5 141565033 141565051 CTTCGCCTAGAATTGGCAG 59 141565096 141566210 CTGAACAAGCTTTGCTTTCAG 59 NA Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 1 1 1 68 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036608 10036626 GTGGACTTTGAACTGAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 2 1 1 69 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036609 10036627 CGTGGACTTTGAACTGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352,ENSRNOT00000088802 1 2 2 80 X 37336210 37336800 GCAGAATTAACAGGACGAAGAG 60 37336841 37336859 GCCATAGAAGTTCTTGGCG 59 NA Rattus norvegicus 81 Clec11a ENSRNOG00000019138 ENSRNOT00000025949 3 1 1 81 1 100293304 100293322 GGGAAGGAATGGGAAGGAG 60 100293097 100293262 CCTGGAGATTCTTCAACATCAG 59 NA Rattus norvegicus 81 Serpina3c ENSRNOG00000010410 ENSRNOT00000013896 1 1 1 80 6 127999068 128000866 TCTCCTCTTTAAAGGCAAATGG 59 127999009 127999031 CTCTTCTCATCCAAGTAGAACTC 58 NA Rattus norvegicus 81 LOC685964 ENSRNOG00000025934 ENSRNOT00000030426 2 1 1 80 4 122219065 122219364 CAAGAAGTTTCCTTACAGGTTACC 60 122219403 122219421 GATTTGCTCTTGGCCTTCC 59 NA Rattus norvegicus 81 Itpripl2 ENSRNOG00000036762 ENSRNOT00000055106 2 1 1 60 1 188141400 188141419 GAGAAGTTGGTGAAGTTCCT 58 188141359 188141377 CACAATGGAAGAGGTCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 1 2 2 80 6 132255171 132258401 CTGAGTCAGTCAAGAAGTTCC 58 132258443 132258461 CGAACACAGTCTGAATCGC 59 NA Rattus norvegicus 81 Rn60_X_0588.2 ENSRNOG00000051220 ENSRNOT00000076131 1 1 1 124 X 57992124 57992142 TTCCATTACAAGGTGCGGT 60 57992008 57992027 CCTCTGTCCTCATCTAGACC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363537 ENSRNOG00000047067 ENSRNOT00000071701 3 1 1 81 4 6029699 6029721 ATCAAGTTCCACATCAAGTTCC 59 6029763 6029781 CGTCATCGGTCATCTTCAC 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000075810 1 1 10 64 18 29995653 29995671 CTCAAGACCGACCTCATGG 60 29995698 30185397 GGGTTGTCTGTAGAACTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc84 ENSRNOG00000012137 ENSRNOT00000016227 2 1 1 80 8 48735613 48735632 ATTCTGGTGGGAGAACAAGG 60 48732610 48735573 TTCTTAAACCGTGCATAATCCG 60 NA Rattus norvegicus 81 Pigl ENSRNOG00000003070 ENSRNOT00000004113 2 1 1 80 10 48788188 48821859 TTGACAAGAGGGAGTTTCCA 59 48821902 48821920 GTATGTGCTGGAGGATGGT 59 NA Rattus norvegicus 81 Lonp1 ENSRNOG00000046502 ENSRNOT00000074253 1 1 1 80 9 10439098 10439118 CTGGGAAGATTATCCAGTGTC 58 10439160 10439268 GGCCAATCTTATCCACCTC 58 NA Rattus norvegicus 81 Zc3hav1 ENSRNOG00000013948 ENSRNOT00000018782 3 1 1 80 4 66035743 66036024 CGATGAGTATCTCCTACGC 57 66035681 66035699 TGGTCCTGACAGATTTCCT 58 NA Rattus norvegicus 81 RGD1565410 ENSRNOG00000037375 ENSRNOT00000082405 3 1 1 80 7 116503613 116503631 TACCTGCTCAACAGCTACC 59 116501810 116503571 TTCACAGAGTCCTTTACAGCT 59 NA Rattus norvegicus 81 LOC680959 ENSRNOG00000030346 ENSRNOT00000045382 1 1 1 60 X 60392038 60392056 TGTCAAGGAGCTGGAAGTG 60 60392080 60392098 GTGAGCAATCTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plod1 ENSRNOG00000007763 ENSRNOT00000010433 2 1 1 80 5 164732800 164735374 ATTCACAACCAAGAACAGCA 58 164732739 164732758 CTTCACAGACTGGTACTCAC 58 NA Rattus norvegicus 81 Mmaa ENSRNOG00000011618 ENSRNOT00000015508 1 1 1 80 19 32308647 32308665 GAGAGTCTTAGCCCACCAG 59 32308708 32312336 GGTCCAGACAATCCTACTCG 60 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 3 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696270 26696289 TCTTTGTCTCTGCTGTCCTG 60 NA Rattus norvegicus 81 Senp8 ENSRNOG00000011595 ENSRNOT00000015415 2 1 1 86 8 64561040 64572810 AGGAATAGAAGTACTGCTGAGTG 60 64559870 64559889 TAACTCAAGACCACAGGGTC 59 NA InUTR Rattus norvegicus 81 Prss2 ENSRNOG00000032916 ENSRNOT00000018852 2 1 1 81 4 70692339 70693567 CACTGCTATAAGTCCCGCA 60 70693610 70693630 CATTGACAAACTGCTCATTGC 59 NA Rattus norvegicus 81 RGD1562055 ENSRNOG00000030214 ENSRNOT00000041674 3 1 1 60 10 2075141 2075162 TCAGAAATTTGCCATGAAGGAG 59 2075183 2075201 ATTGAGCCTGGTGTCTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 1 2 2 80 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410305 219410326 GATTCTAGAATGTTCCGCTCAG 59 NA Rattus norvegicus 81 Prr9 ENSRNOG00000012312 ENSRNOT00000016430 1 1 1 135 2 192026626 192027190 GACTCTTCAAATCATCTGAGATGTC 60 192026515 192026533 TCCTGACATGATGGGACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1380 ENSRNOG00000049114 ENSRNOT00000041708 2 1 1 60 10 12776640 12776661 TGAGCTGTTGATTCTTACAGAG 58 12776601 12776619 CAGGATGCAGACAAATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1380 ENSRNOG00000049114 ENSRNOT00000041708 3 1 1 60 10 12776639 12776660 GAGCTGTTGATTCTTACAGAGG 59 12776600 12776618 TCAGGATGCAGACAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589 1 1 2 80 10 95243361 95243379 TCCGCGTGCATATACTAGC 60 95243422 95244268 CAATATACCTGCTTCCGGGT 60 NA Rattus norvegicus 81 Olr508 ENSRNOG00000053924 ENSRNOT00000080756 2 1 1 60 3 73839136 73839154 CCATCTGTAAGCCTCTCCT 58 73839094 73839112 ACTAGGACCCAACATACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm27 ENSRNOG00000027250 ENSRNOT00000036613 1 1 1 80 18 36646812 36646832 GAAGTTACAGCAAGACATGAG 57 36646872 36647011 TTAGAGATCAGCATCTTCTGG 57 NA Rattus norvegicus 81 Vom1r37 ENSRNOG00000038647 ENSRNOT00000058999 2 1 1 60 1 72210368 72210388 GCATTTACCAGTTTGTCACTC 58 72210410 72210428 ATTTCTCTGAGCATGACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aamdc ENSRNOG00000012584 ENSRNOT00000016783 2 1 1 80 1 162527411 162533683 AACAGGAACTGAGCATTCTC 58 162527350 162527369 ATCACAAGAGTCTGTACACC 57 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 2 2 2 80 9 64520280 64520301 CAGTAGAGATTGCACAAGATGG 59 64513779 64520241 CAGAATAAGGCTCTGGAACTG 59 NA Rattus norvegicus 81 Frmd4b ENSRNOG00000007764 ENSRNOT00000010717 1 1 1 80 4 129677382 129677403 CATAAACGAATACCGAATCCGA 59 129674548 129677344 GATGGAATGATGTCTTCTGGAG 59 NA Rattus norvegicus 81 Erlec1 ENSRNOG00000007283 ENSRNOT00000050321 1 1 1 80 14 115337197 115338647 GAGAAGTCAAATGAGATTCCCA 58 115337138 115337157 TGTACCATTTCCCATTCCCA 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000034237 ENSRNOT00000043244 3 1 1 60 14 33031218 33031237 CAGAATCAAGCGATTCCTGG 59 33031177 33031197 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samd14 ENSRNOG00000004155 ENSRNOT00000005519 2 1 1 84 10 82823929 82823947 AAAGCTTCGAGAACCTGTG 58 82825752 82829052 TTTGTGTAAGCTAGTATCCAGC 58 NA Rattus norvegicus 81 Ndufb4l1 ENSRNOG00000034289 ENSRNOT00000044617 2 1 1 60 14 7949523 7949543 TTTAGGGCCTCTCATCTTCTG 59 7949563 7949583 TCTTTCCTTTCTGTCCCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tram1l1 ENSRNOG00000009835 ENSRNOT00000013030 3 1 1 60 2 228545100 228545120 AGTCAGGAAACAAGATATCCC 57 228545142 228545160 AATGTGGAAGAGGTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl15 ENSRNOG00000006515 ENSRNOT00000008558 1 1 1 82 X 63358960 63358978 TCTGATGACTCCATCCAGC 59 63388850 63388868 CAACTTCATACCGCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Otop3 ENSRNOG00000053055 ENSRNOT00000083302 1 1 1 90 10 103892980 103896262 GTTCTCAGGTAACGGGACC 60 103896315 103896334 GAAAGGGTAGAGCATCAGGA 59 NA Rattus norvegicus 81 Art1 ENSRNOG00000020251 ENSRNOT00000027427 2 1 1 94 1 167202163 167202497 GAGTTCAGGTTCAAAGTTACTC 57 167202551 167202570 ATACTGGTCATCAAAGGACG 57 NA Rattus norvegicus 81 Osgin2 ENSRNOG00000009358 ENSRNOT00000012394 3 1 1 80 5 29664904 29667725 CAAGCGAAGGAACTTAAAGGG 60 29664844 29664864 CCCATGACCTTTACATAGTGC 59 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000084560 3 1 3 80 6 29139415 29139433 AGCTGAACTGGATCCAGAG 59 29139477 29142126 GCTGTCACTGATAAGCCTC 58 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000092223 2 1 3 88 6 29065172 29069742 AATGTGTTGGCTACTGTGG 58 29069794 29069812 ATAGATCTGAGGGTAGCGC 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 1 2 2 80 4 120433847 120433871 GAAGAAGGAAATCATACAGGATGTG 60 120433908 120435491 AGAATATCTTGCCCACCCTG 60 NA Rattus norvegicus 81 Olr410 ENSRNOG00000048499 ENSRNOT00000073976 1 1 1 60 3 16318979 16318999 TGCTCAAACTTTCCATCTCAG 59 16319020 16319039 ACTGCTAATGTGAGGATGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 1 2 2 81 4 157355825 157355957 ACACCACCAATAAGGTGCA 60 157355762 157355780 ACGAAGTTCCCTGATGGTG 60 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 1 2 2 85 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494482 42494500 TTCGTACATGTGAGGGCTG 60 NA Rattus norvegicus 81 Slpil2 ENSRNOG00000029508 ENSRNOT00000043470 1 1 1 80 3 160738153 160738171 CAGGAAAGCAGAGATGCTG 59 160737610 160738109 TCTTCTTCACTGGTCTGGG 59 NA Rattus norvegicus 81 Fgf17 ENSRNOG00000012912 ENSRNOT00000017723 3 1 1 151 15 52331882 52332076 CCTAACCTTACCCTGTGCT 59 52328868 52328886 TAGAGCTGGTACTCACGGA 59 NA Rattus norvegicus 81 Fkbp3 ENSRNOG00000004629 ENSRNOT00000006531 3 1 1 81 6 86818447 86821995 GTTCAGATTCGTTTCTTGCAG 58 86818386 86818407 ACCAAATGGTCCTTATTAGCAG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076190 1 1 5 60 X 64249051 64249069 ATCTTTAGGCCAGACCCTC 59 64249009 64249027 TGGGAGTCTTGAGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v1a ENSRNOG00000001992 ENSRNOT00000002727 3 1 1 80 11 61569795 61570807 TATTGTTCAGGTGTTCTGGG 58 61570849 61570868 TAGCTAATGAGCCAGTTGAC 57 NA Rattus norvegicus 81 LOC691519 ENSRNOG00000036743 ENSRNOT00000030732 2 1 1 102 1 190466242 190478002 CAAATAAGGATGGCTTCACAC 58 190478065 190478084 TCAGCTGCATGTATACTAGC 57 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216,ENSRNOT00000079368 3 2 2 81 17 47392329 47393553 TGACCTTCCGGAAGATGTG 59 47392266 47392287 TTTACAGTCAGCATCAAAGGAC 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619,ENSRNOT00000084207,ENSRNOT00000055473 2 3 3 82 4 181103813 181105838 CTGCTCCAGTCAGAATTCAG 58 181105880 181105901 GTTCTTGTTGAAAGAACAGAGG 58 NA Rattus norvegicus 81 AABR07015505.1 ENSRNOG00000055911 ENSRNOT00000064713 2 1 1 60 14 59980264 59980283 CGAAACAAATCCACGGAGTC 60 59980223 59980241 TGGAGCAGTACTCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pot1b ENSRNOG00000047439 ENSRNOT00000072684 1 1 1 80 9 7876217 7876241 CTGTAGATTTGGAAGCTATTCAGAC 60 7871083 7876183 CAGGGCTAGTACTTATTGAACAG 59 NA Rattus norvegicus 81 Pot1b ENSRNOG00000047439 ENSRNOT00000072684 3 1 1 80 9 7889627 7889645 GTAGAAACTGCGAAACCCT 58 7886272 7889584 TATATGCCTGGATCTTCAGC 57 NA Rattus norvegicus 81 Cgn ENSRNOG00000020952 ENSRNOT00000028440 3 1 1 80 2 195925316 195927000 TGAAGAGGTGAAGAAGCGG 60 195925254 195925273 CACTCTTCAGCCTTCTCCTC 60 NA Rattus norvegicus 81 AABR07069845.1 ENSRNOG00000054847 ENSRNOT00000072823 1 1 1 60 8 41350973 41350993 TCCTGCAGTAACACCTATGTC 60 41351015 41351033 TGATACCTGTACCCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a4 ENSRNOG00000058692 ENSRNOT00000087300 3 1 1 80 6 50830270 50830289 CTATTGCAGTGTCTGTAGGG 58 50829016 50830227 CGAAGGCAATGAATTCCTG 57 NA Rattus norvegicus 81 Olr1119 ENSRNOG00000034283 ENSRNOT00000045458 2 1 1 60 8 18115290 18115308 TCTCTGACTCACACCTCCA 60 18115248 18115268 TCAGCAAAGGACAGATTAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 1 2 2 86 5 100957783 100960624 CTGTCCCTGGATAAACAACTG 59 100957717 100957735 TAGCAGGTAAGCAGCTCAG 59 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000011659 1 1 2 81 6 51018049 51019007 AAATCTTTAGCAGAGGGCC 58 51017986 51018004 CAGGGAGCCTCTTAATCAG 57 NA InUTR Rattus norvegicus 81 LOC679766 ENSRNOG00000033640 ENSRNOT00000049313 1 1 1 60 14 74095098 74095118 CAGTTGTGAACCCAGAAACTC 60 74095058 74095077 GAGTCCTCTTCATCTTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmdn3 ENSRNOG00000011690 ENSRNOT00000016356 1 1 1 80 3 110953222 110960887 GTGAAGGAGGTTATACGACAG 58 110953162 110953181 CATCTTCAGCATCCTCACTC 58 NA Rattus norvegicus 81 Nde1 ENSRNOG00000058007 ENSRNOT00000086392 3 1 1 80 10 895952 895970 AAGCTGAAACCAGAAACCG 59 893865 895911 CAAACTTCTCCTTCACAGACTC 59 NA Rattus norvegicus 81 LOC498154 ENSRNOG00000001289 ENSRNOT00000001734 2 1 1 92 12 17378677 17379500 CGATGAGGACAAGGTTCCT 59 17379556 17379574 TTCTGCACTGTCAGCTCTC 60 NA Rattus norvegicus 81 Gda ENSRNOG00000018282 ENSRNOT00000024775 1 1 1 80 1 238994647 238995711 CCAACTCTAATCTGTCGCTG 59 238994586 238994604 TCCCAAGCCCTATCTTCAC 59 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 2 1 1 80 10 56487741 56487759 TGTACAACTGCTCCACCTG 60 56487593 56487697 ACAGATCGTGACTTCCTGG 59 NA Rattus norvegicus 81 Troap ENSRNOG00000060703 ENSRNOT00000089448 2 1 1 80 7 140762091 140762109 AGAAGGAGGACCCAAACTG 59 140762151 140764089 GATGAATATGTGGTCCTGGTG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076220 3 1 3 60 5 57448097 57448119 GAATGCTTCTTGAACTCTAGGTG 60 57448059 57448080 AAATAGTCTAACTTCCTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pinx1 ENSRNOG00000012012 ENSRNOT00000016027 3 1 1 81 15 47219222 47219241 TCACCAGGATGACTTCAACC 60 47219283 47222991 CTTGTTGTCTGAGGAATCTGC 59 NA Rattus norvegicus 81 Zxdc ENSRNOG00000025818 ENSRNOT00000038244 3 1 1 86 4 122294032 122294050 GTTCTATCCAGCTCTGCAG 58 122294099 122295726 CCCACTTTCCAAGTAGAGAC 58 NA Rattus norvegicus 81 AABR07038567.1 ENSRNOG00000047748 ENSRNOT00000075300 3 1 1 98 X 55332597 55332616 CTCTGGAGCAGAAGATTCCA 59 55332677 55332696 ATTGAGTCCTGGATTTCCTG 57 NA DesignNoJunction Rattus norvegicus 81 Mir743b ENSRNOG00000041260 ENSRNOT00000063013 1 1 1 60 X 151253360 151253379 AGACTGGTGTCCATCATGTG 60 151253319 151253342 GAGCCTTACTCTATTCAGTATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rln3 ENSRNOG00000005911 ENSRNOT00000007775 1 1 1 211 19 25166496 25166514 CAGCTGATCATGGCAACTC 59 25164741 25164759 CCATCAGCGAAGAATTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 2 2 2 80 3 82751601 82751622 ACAGAATGACATGCTTCATGTG 60 82750570 82751560 ACTTCTTTCCGGAGGAACC 59 NA Rattus norvegicus 81 Ttf1 ENSRNOG00000039777 ENSRNOT00000061029 2 1 1 80 3 7641058 7642369 GAAGGAGATACAGAGATTAGAACC 58 7642408 7642426 GATACGCATCTTGTTGCAG 57 NA Rattus norvegicus 81 Nudt9 ENSRNOG00000002186 ENSRNOT00000002973 2 1 1 80 14 7044382 7045495 ATCCTATTATAACCAGGTGGAAGAG 60 7044326 7044344 ACTGCAAGATGCATTTCCC 59 NA Rattus norvegicus 81 Hexim2 ENSRNOG00000021287 ENSRNOT00000004218 2 1 1 95 10 91218683 91221839 AAGACGAAGACTTCTGGTGG 60 91221897 91221915 AATCTCCCTTCCTGGTTGC 60 NA Rattus norvegicus 81 AABR07051793.1 ENSRNOG00000039141 ENSRNOT00000030332 3 1 1 91 3 21556838 21586080 AAACCAATTGTACTGCCGC 60 21586135 21586153 CCCTGTTCTCATTCTGTGC 59 NA Rattus norvegicus 81 Olr334 ENSRNOG00000042023 ENSRNOT00000067320 1 1 1 60 1 229443512 229443531 GTCACCCACACTATGTTCTC 58 229443553 229443572 AGAACCTATGAGTCCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm70a ENSRNOG00000001640 ENSRNOT00000002238 1 1 1 80 11 45494360 45496157 GAAGGAGTGTTTAGAAGATGTCAC 60 45494303 45494323 TTATCAGCTAACAGCATGCTC 59 NA Rattus norvegicus 81 Zbtb6 ENSRNOG00000009340 ENSRNOT00000012364 3 1 1 85 3 21683057 21684072 TTTGCGAGTCGATTGTCAC 59 21682990 21683010 TTTCTGTAGGACCACATCTCC 59 NA InUTR Rattus norvegicus 81 Osbpl3 ENSRNOG00000010011 ENSRNOT00000013828 3 1 1 80 4 80085269 80088925 TCTACCACCTGAAGGTAAAGTC 59 80085210 80085228 TCTGCCGGTACATTCTGTG 60 NA Rattus norvegicus 81 Dexi ENSRNOG00000002635 ENSRNOT00000003544 2 1 1 217 10 5199874 5199894 ACGTCTTCGATGGATATTTGG 58 5211365 5211383 CTCACTTCTCCTGGCAGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000078278,ENSRNOT00000009687 2 2 2 80 3 79593759 79595574 GGACCTCAAATTTCAGATTGGA 59 79595613 79595633 ATGGACTGTCTGTTAATCCCT 59 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 3 2 2 80 1 220784824 220784844 GCAGACAACAAAGAAAGAACG 59 220784683 220784783 CTGAAGAGATCCTCTGCCTC 59 NA Rattus norvegicus 81 Ahcyl2 ENSRNOG00000039300 ENSRNOT00000025165 2 1 1 80 4 57175655 57176131 TATGGAGAGGTAGGAAAGGG 58 57176171 57176192 GATGGGATCAATTTCAGTTACG 58 NA Rattus norvegicus 81 Cluh ENSRNOG00000002669 ENSRNOT00000003687 2 1 1 80 10 61443156 61443278 TTCTACTTGAATCAGTCCACAG 58 61443316 61443337 CTCTACTAGAGAATGGCTAAGG 57 NA Rattus norvegicus 81 Satl1 ENSRNOG00000022476 ENSRNOT00000037149 3 1 1 80 X 83786195 83786218 CTTGTGCTTTCTACATAAGACCTG 60 83782434 83786162 CATAGGTAGCCAGTTCTTTAATCAG 60 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157,ENSRNOT00000091532 3 2 2 80 9 14569387 14569406 CTTAAGAGGAGACAAGCGAG 58 14569447 14569937 AGACTCATGGAGGTATTTCCT 58 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076346 3 1 3 81 6 76701663 76702743 AACAATTAGGAAGGCAATGGC 60 76702783 76702804 CACAGAATAGGTCCCAATTCAC 59 NA Rattus norvegicus 81 Taar2 ENSRNOG00000025951 ENSRNOT00000035424 1 1 1 60 1 22579002 22581971 GGAAACCTTCGATTGTTCAG 57 22578961 22578981 CAGAGACCTTTCATTCTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Rasa2 ENSRNOG00000011909 ENSRNOT00000016327 3 1 1 80 8 104464277 104466486 GCTAAGAGATTTCCTAATAACCCTC 59 104464221 104464239 CGCTACAGCAAAGAAACGA 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 1 1 1 64 14 87701368 87701388 GGAGAAGAGAATAAAGGAGCA 57 87701072 87701342 TTTCTGGTTGACAGGACTG 57 NA DesignNoJunction Rattus norvegicus 81 Ddx31 ENSRNOG00000013040 ENSRNOT00000064323 1 1 1 80 3 7427776 7428587 CTCCACCCACATCTAATTTCC 59 7430095 7430113 TGGGATACTCTGCTTCTGG 59 NA Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 3 2 2 80 10 82185690 82185873 CCATCTTCCAGGTCATCAC 58 82185628 82185648 TGAAGTTGTAGAAGGAGTGAG 57 NA Rattus norvegicus 81 Pgc ENSRNOG00000014492 ENSRNOT00000019650 2 1 1 80 9 15268180 15268676 CAGATTACCATTGACGACTTCC 59 15268121 15268139 GTCTACAATGCCTTGGCAG 59 NA Rattus norvegicus 81 Crbn ENSRNOG00000006534 ENSRNOT00000008873 2 1 1 80 4 138882048 138882067 GACCAGGACAGTAAAGAAGC 58 138881377 138882006 TCCCAGGTATGTATGTGAGG 58 NA Rattus norvegicus 81 Slc35b3 ENSRNOG00000016174 ENSRNOT00000021669 2 1 1 80 17 26494810 26497730 TAATCTGACAGGTGTGATGC 58 26497771 26497791 TTCATAGCTTTCTCCTGAACG 58 NA Rattus norvegicus 81 Mis18bp1 ENSRNOG00000023093 ENSRNOT00000091202 2 1 1 80 6 86883651 86885636 AGAAACAAAGAATCCAGTTGCC 60 86883592 86883613 ATACTGGATTCCTGTCCATAGC 60 NA Rattus norvegicus 81 Nphs1 ENSRNOG00000020873 ENSRNOT00000045212 1 1 1 80 1 88923739 88924224 ACCTTCATCCAGAGTGGAC 59 88924267 88924286 TGTGATGCAGAGTTTCTCCT 59 NA Rattus norvegicus 81 LOC100909977 ENSRNOG00000042598 ENSRNOT00000066343 1 1 1 80 11 54185998 54187432 CTATCACAGTTCATTAGACTGCG 59 54187468 54187490 AATTCTCCTAGAGCTACTATGGC 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 3 3 3 83 17 43667354 43667373 AAGTGGGATCACCATTTGTG 59 43667419 43668789 ATGGTTCCTCCTGAAACCT 58 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 3 1 1 61 11 65960424 65960444 AGTATCTGCTTCAGTACAACG 58 65960467 65965177 AATCAAGGCAGGATCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Popdc2 ENSRNOG00000058752 ENSRNOT00000087892 1 1 1 86 11 64940754 64940773 TGGATTATAGGAGCGATGGG 59 64937332 64940706 TTCTAGAAGACAGGATCCGG 58 NA InUTR Rattus norvegicus 81 Tuba3a ENSRNOG00000032967 ENSRNOT00000052352 3 1 1 81 4 179908968 179908988 GGCTATTGCTACCATCAAGAC 59 179909026 179910330 GTAGTTAATACCCACCTTAAAGCC 59 NA Rattus norvegicus 81 Psmd12 ENSRNOG00000003117 ENSRNOT00000004283 3 1 1 80 10 95720792 95721448 ATTCCCAAATACAAGGATCTGC 59 95721488 95721507 CCCATAGTCCTCAACAAGTG 58 NA Rattus norvegicus 81 Zfp36 ENSRNOG00000058388 ENSRNOT00000090129 3 1 1 82 1 85380162 85380851 TCTACGAGAGCCTTATGTCG 59 85380895 85380914 TATGTTCCAAAGTCCTCCGG 60 NA Rattus norvegicus 81 Taldo1 ENSRNOG00000018367 ENSRNOT00000024863 3 1 1 88 1 214385114 214385132 AAATGGCTGTGGAGAAGCT 60 214385183 214385695 GAACATTCGTTCTGTGAGCA 59 NA Rattus norvegicus 81 Cacng1 ENSRNOG00000003245 ENSRNOT00000004349 1 1 1 80 10 95923574 95923592 AATTGCTCCTACTTCAGGC 58 95922367 95923531 GATGCTGTACTCCTTCTGAG 58 NA Rattus norvegicus 81 RGD1563015 ENSRNOG00000006658 ENSRNOT00000008726 2 1 1 80 5 138263446 138263465 ATTAATGCTTTGTCCCTGGC 59 138260978 138263403 AGCACAGTGTGATTTCCTG 58 NA Rattus norvegicus 81 Rn60_5_0814.3 ENSRNOG00000030866 ENSRNOT00000047961 2 1 1 80 5 77551311 77551675 GCTCTATGGCAGAACAAAGG 59 77551250 77551269 CTAGTGATTCCATGCACCAC 59 NA Rattus norvegicus 81 RT1-M1-5 ENSRNOG00000028035 ENSRNOT00000038725 3 1 1 87 20 2356545 2356826 TACAGCATGACTGTTATCACAC 59 2356872 2356892 AATTCTACGAATCCGTGACTG 58 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 1 2 2 80 13 44629160 44629178 CCGTCGAAAGGAATCAACC 59 44629219 44629679 TGAGTTATATCAGCAACGTCTC 58 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 2 2 2 80 13 44629153 44629171 AAATTTGCCGTCGAAAGGA 58 44629214 44629672 TATCAGCAACGTCTCTTCCT 59 NA Rattus norvegicus 81 Psca ENSRNOG00000061376 ENSRNOT00000081571 1 1 1 81 7 116091460 116091704 TTACATCTCGTGTCCGGAC 59 116091749 116091767 TTCTCCGTGTCATCCTCAC 59 NA Rattus norvegicus 81 Psca ENSRNOG00000061376 ENSRNOT00000081571 3 1 1 83 7 116091460 116091704 TTACATCTCGTGTCCGGAC 59 116091751 116091769 AGTTCTCCGTGTCATCCTC 59 NA Rattus norvegicus 81 Rab11a ENSRNOG00000011302 ENSRNOT00000015598 2 1 1 80 8 70203370 70203391 TTGTCGTTCATTGAGACATCTG 59 70194650 70203335 GCGGTATATCTCTGTTAGAATTGTC 60 NA Rattus norvegicus 81 RT1-M1-4 ENSRNOG00000027873 ENSRNOT00000038626 2 1 1 89 20 2390411 2390435 CCCTGAAAGATATTCGGTTTATGAG 60 2390095 2390366 GTGATATCCTGGACTCACCAG 60 NA Rattus norvegicus 81 AABR07006823.1 ENSRNOG00000045862 ENSRNOT00000075459 2 1 1 85 1 258477115 258477136 GGTCTTGCCTTACAAAGTAGTG 59 258477032 258477069 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 3 2 2 83 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935391 166935412 GGAAATGTCCTTATGTGCTTCC 60 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 1 2 2 80 2 237814842 237814861 CAACGAGATTGGCTTCATCC 59 237830458 237831622 TTGTGCAGTGGAAATACATGAG 59 NA Rattus norvegicus 81 LOC100909935 ENSRNOG00000032077 ENSRNOT00000044773 1 1 1 60 1 149913783 149913801 CAATCGGCAAAGTGGTCTC 59 149913741 149913760 GTGAGAGGGTTGACTAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304963 ENSRNOG00000008942 ENSRNOT00000011832 3 1 1 86 6 23341385 23341403 CAGACTGGGAATCCCATCC 60 23345240 23345258 AGTTGTTCCAAGGTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Utf1 ENSRNOG00000050207 ENSRNOT00000075049 2 1 1 218 1 212281640 212281658 CCCTTCGATGACCAGATCC 60 212281937 212281955 GGAAGAGCTGAATCTGAGC 58 NA DesignNoJunction Rattus norvegicus 81 Sgpp1 ENSRNOG00000005175 ENSRNOT00000006913 2 1 1 81 6 98683480 98683500 CTGATTCTCATTCCCTGTTGG 59 98677740 98683437 CAATGACGTCCAGGATGGA 60 NA Rattus norvegicus 81 Gpr174 ENSRNOG00000032970 ENSRNOT00000046164 1 1 1 69 X 78372311 78372329 AGCTTCTATCAGCACTGGA 58 78395312 78395333 ACATTGAAGAAGAGCATGAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ttc1 ENSRNOG00000003980 ENSRNOT00000005304 2 1 1 80 10 29357397 29357416 AAATAGAGCTGCTGCAAGGA 60 29350672 29351449 GGATTTAACTGAATGGCTTTGC 59 NA Rattus norvegicus 81 Ceacam3 ENSRNOG00000027607 ENSRNOT00000023663 1 1 1 80 1 79124137 79127800 GCACCTTCATGTGTACTTCTC 59 79127840 79127860 GTCGGCACTGATTCAATACTG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758,ENSRNOT00000066128 3 2 2 82 15 51461131 51461149 GACAGAACTCAGAGTTCGC 58 51461195 51462872 ATCAACTTCAGGGCATCAG 58 NA Rattus norvegicus 81 Nox1 ENSRNOG00000048706 ENSRNOT00000075325 3 1 1 80 X 104921684 104921702 TCTCCAGCCTATTCCATCC 58 104921513 104921641 CTGCATACATCACTGTCACG 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454,ENSRNOT00000076657 2 2 3 60 14 47202533 47202552 GGTTCAGACTTTGTTTCAGG 57 47202492 47202510 GGCCTGGTAAGTGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027869.1 ENSRNOG00000050687 ENSRNOT00000072833 2 1 1 80 17 47653537 47653556 AAAGATATGGGCCTAGGTGG 59 47651606 47653496 AAGCTACAGTCATCCTTGTCC 60 NA Rattus norvegicus 81 Pnmal2 ENSRNOG00000016863 ENSRNOT00000022610 1 1 1 60 1 78877451 78877470 GGAGGTAGAAACAGAAGTGG 58 78877492 78877511 TTCATCATCGTCATCATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idi1 ENSRNOG00000016690 ENSRNOT00000022389 3 1 1 93 17 57982888 57983671 AATCGCTGTGTTCTAGGTC 57 57982813 57982831 CTGCTAGAAGCTGAACCTG 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 1 2 2 82 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487481 69487501 TTTCCAGTTCCACAACATCAG 59 NA Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 2 1 1 60 4 118160264 118161078 GAATATCCGGAAGATGCAGG 58 118161100 118161119 GTTGTCTTCACAGCAGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Gm2a ENSRNOG00000052219 ENSRNOT00000078910 2 1 1 80 10 40443927 40449013 CTCAGAAGGTGGAGCTCAC 60 40449056 40449075 AGCTTCCTAGCTGTTCTACG 59 NA Rattus norvegicus 81 Armcx2 ENSRNOG00000025705 ENSRNOT00000029511 1 1 1 80 X 105620946 105621479 AAAGGAATTCGGGTTCTTAGG 58 105620886 105620905 CTAATTCAGCCAGAGCTTCG 59 NA InUTR Rattus norvegicus 81 Ppfia3 ENSRNOG00000020731 ENSRNOT00000028142 1 1 1 80 1 101331175 101331193 AAACGGCTCAACTATGACC 58 101330686 101331131 CCACACCATCACATCTCTG 58 NA Rattus norvegicus 81 LOC689618 ENSRNOG00000028533 ENSRNOT00000029558 1 1 1 87 3 171597425 171601010 GGACGAGATCTGGAAATACC 58 171601057 171601078 CATGGAGGTTGTTAAATATCCC 57 NA Rattus norvegicus 81 Olr384 ENSRNOG00000032117 ENSRNOT00000041509 2 1 1 60 1 230812666 230812690 CTATAGCCTAAGAAACAAGGATGTG 60 230812707 230812726 CGGGCATTTACCAATAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acrbp ENSRNOG00000017399 ENSRNOT00000024618 3 1 1 80 4 157564670 157564883 GATTGGTACCAGATGGTGC 58 157564927 157564945 GATACTGAGCAAACTGGCA 58 NA Rattus norvegicus 81 Lct ENSRNOG00000003681 ENSRNOT00000004908 1 1 1 80 13 45019844 45019862 TGAGCTATGCAGGCTATGG 59 45017310 45019800 GGTGAGCCACCTTAAAGGA 59 NA Rattus norvegicus 81 LOC100363452 ENSRNOG00000021395 ENSRNOT00000037551 2 1 1 60 3 103192935 103192956 CTACAATGCATCCAATAACGAG 58 103192977 103192995 CACAATGCAGTTCTTCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1115 ENSRNOG00000050583 ENSRNOT00000041855 1 1 1 60 8 17775995 17776013 GTGATGGCCTATGATTGCT 58 17775953 17775974 TCATGATGATTGTGTACCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf11 ENSRNOG00000049547 ENSRNOT00000049056 2 1 1 81 15 60504156 60504175 ACAGAAGCACTACCTGACTC 59 60488542 60504115 CCACAATGTGTTGTAATTCCCT 59 NA Rattus norvegicus 81 Lmln ENSRNOG00000001781 ENSRNOT00000002427 2 1 1 80 11 70918888 70918908 ATTCAGCTGGCATTTAAGTGG 59 70916573 70918848 TTCTTAAACAGCTCTGGTTGG 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 3 1 1 80 12 12384189 12384207 TTATATGGGCCACCCTCTG 59 12384251 12384356 ACCAGGAATTTCCTTTGGG 58 NA Rattus norvegicus 81 Gabpb2 ENSRNOG00000021105 ENSRNOT00000028661 3 1 1 81 2 196361387 196361405 CAAACCGCAATCCCTACTG 59 196359993 196361342 CAGGCACAGTTAGAACTGG 58 NA Rattus norvegicus 81 Rn60_X_0641.5 ENSRNOG00000051055 ENSRNOT00000076163 2 1 1 60 X 63431399 63431417 CCAGGTTCCAGGTTCAGAG 60 63431436 63431459 CTGTCTCCTAAGCTTCTATAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0641.2 ENSRNOG00000051315 ENSRNOT00000075921 1 1 1 60 X 63434330 63434348 GGCGTCATTGTAAACAAGC 58 63434176 63434194 TGCACATTGATCCTCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cracr2b ENSRNOG00000019199 ENSRNOT00000025964 1 1 1 86 1 214445199 214445217 AGATGTGGTTGCTGTCTCC 60 214445266 214445496 CTCAGATTCAGCTCCCTCAG 60 NA Rattus norvegicus 81 AABR07004678.1 ENSRNOG00000052842 ENSRNOT00000089920 3 1 1 60 1 149778530 149778549 GGATTCCACACTACAGACAC 58 149778489 149778507 GATCTCCAGGAATGACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 2 2 8 113 13 68703050 68707607 GATGACCCAGATTATGATGCA 58 68707682 68707700 AGGCTTTAATGGTGGTTCC 58 NA Rattus norvegicus 81 RGD1564887 ENSRNOG00000025523 ENSRNOT00000054703 1 1 1 80 1 265729086 265733160 GCATGAAGAACTTGATGGAGAG 60 265729027 265729050 GTTTCAGACATAGACTCTTCAGAC 59 NA Rattus norvegicus 81 Scgb3a2 ENSRNOG00000026912 ENSRNOT00000037796 2 1 1 81 18 38292911 38295128 TGTGGTTATTCTGCCACTG 58 38295172 38295191 GGTTGTCCAAAGGTAAAGGT 58 NA Rattus norvegicus 81 AABR07039303.1 ENSRNOG00000053857 ENSRNOT00000082660 2 1 1 80 X 73580182 73580203 TACATCAAGACAGATAGCTCCC 59 73580243 73580263 CTCCTCCCAACCAAATTCCT 60 NA Rattus norvegicus 81 Vip ENSRNOG00000018808 ENSRNOT00000025477 1 1 1 80 1 42173914 42174277 CGAATCAGCAGTAGCATCTC 59 42174320 42174338 GCGGGTGTAGTTATCTGTG 58 NA Rattus norvegicus 81 Olr1052 ENSRNOG00000033400 ENSRNOT00000049493 1 1 1 60 7 16432595 16432615 ACCATCATTACACTCACTCTG 58 16432555 16432575 TGAGGAAGAAATACATGGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pknox1 ENSRNOG00000001184 ENSRNOT00000001566 1 1 1 80 20 10334406 10338529 GGACAACAAATGCAGGTGG 60 10338573 10338591 ACTCACTCCTTCTGCATCC 59 NA Rattus norvegicus 81 LOC680441 ENSRNOG00000033439 ENSRNOT00000051510 1 1 1 60 4 148361963 148361982 TATCAAGGCCAACAAACACC 59 148361922 148361946 CACATCAATGTCATAGAGTTTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp551 ENSRNOG00000047230 ENSRNOT00000074063 1 1 1 83 1 66899020 66899038 TACTGCAATGTGATGCTGG 58 66900370 66900390 ACAAGTTACCTCTTTACTCCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp551 ENSRNOG00000047230 ENSRNOT00000074063 2 1 1 84 1 66899020 66899039 TACTGCAATGTGATGCTGGA 60 66900370 66900391 CACAAGTTACCTCTTTACTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625,ENSRNOT00000003512 1 2 2 80 X 82676305 82676323 AATTGGCCCTAGCTTTGGA 59 82675719 82676263 CGTCAAGCAAGATGTTCTCTG 60 NA Rattus norvegicus 81 Tpbgl ENSRNOG00000017922 ENSRNOT00000024157 1 1 1 60 1 164589623 164589641 GCCTCTTACGTCTTCTTCG 58 164589581 164589599 GCACCATGAGGAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr796 ENSRNOG00000049431 ENSRNOT00000043710 1 1 1 60 3 103248437 103248456 CCTGGGATTCACAAACTCCT 60 103248474 103248497 GAACATTGAGGATACCAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scgb1d2 ENSRNOG00000020294 ENSRNOT00000027492 1 1 1 88 1 225593147 225594887 CTATGAAGCTAATGCTAGCCAG 59 225593080 225593100 CCTTCTTCAGTTCTTCCTCAC 58 NA Rattus norvegicus 81 Cst13 ENSRNOG00000005103 ENSRNOT00000006850 1 1 1 80 3 143156179 143156198 AAGAATACAACAAGGCCAGC 59 143156241 143160553 TGTCTGTGATCTGCTCCTG 59 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832,ENSRNOT00000089460 2 2 2 80 10 15990135 15992383 CATTACGAGCTGTGGAGCT 60 15990073 15990092 CTGGGTCAGTATCGATTCCA 59 NA Rattus norvegicus 81 Edf1 ENSRNOG00000016272 ENSRNOT00000022196 3 1 1 90 3 2781306 2783467 TCTAAGCAGGCCATCTTAGC 60 2783839 2783857 TGGAATGCTGCTTGTTCTG 59 NA Rattus norvegicus 81 Olr1144 ENSRNOG00000030753 ENSRNOT00000040848 1 1 1 60 8 19772877 19772896 AGTAATGGCTTATGACCGCT 59 19772836 19772856 CATGATGACCAAGTACCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crym ENSRNOG00000061215 ENSRNOT00000088482 1 1 1 80 1 189954256 189955779 TCTCCTTCAAGGAGGTGAG 58 189954194 189954213 GAACATCTCCTTGCACTGAG 59 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299,ENSRNOT00000068190 1 2 2 80 14 110792185 110792204 GAAGCTCTTGAACCAGAACG 59 110790915 110792145 TATTCCAGTACATCGAGCATCC 60 NA Rattus norvegicus 81 Pla2g4e ENSRNOG00000024904 ENSRNOT00000030502 3 1 1 80 3 111957821 111957839 ATGCTTGGAATCTGTCCCA 59 111957385 111957780 GATCATCTTCGATGTCATGCAG 60 NA Rattus norvegicus 81 Trh ENSRNOG00000011824 ENSRNOT00000015944 2 1 1 94 4 124112317 124112335 CTGGAGAATGTTCAGGTCC 58 124111754 124112259 ATCCAGGAGTCTAAGGCAG 58 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073,ENSRNOT00000018340 2 2 2 80 14 81389596 81394496 TCTACAATCACATCACAACCAG 59 81389537 81389557 CTTCACTGTAGAGAAGTCCGA 59 NA Rattus norvegicus 81 AABR07051652.1 ENSRNOG00000055193 ENSRNOT00000074650 2 1 1 60 3 18707004 18707022 AGTCTCCACATTCCCTGTC 59 18707045 18707064 CTTGCTAGACATTCGATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a6bl ENSRNOG00000050395 ENSRNOT00000074127 3 1 1 81 1 227246037 227248815 AAATCTTTGGTAGATGGCAGC 59 227248855 227248876 TGACAGAGATGATAATGATGCC 58 NA Rattus norvegicus 81 Olr246 ENSRNOG00000050375 ENSRNOT00000050651 2 1 1 60 1 172265315 172265334 GATTCCCATGTTGAACCCTC 59 172265356 172265375 CATAGCCTCCTTTACCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc137 ENSRNOG00000048712 ENSRNOT00000072099 3 1 1 82 10 109632129 109633598 GAAGAAAGCGTTCCAGAAGC 60 109633642 109633661 ACTCTTGCTCCAATCTGTCC 60 NA Rattus norvegicus 81 Olr399 ENSRNOG00000049538 ENSRNOT00000075496 1 1 1 60 3 15823987 15824006 TGGGCTATACCTAGTTCCCT 59 15824028 15824047 CACAGACACAATGACATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc15 ENSRNOG00000002751 ENSRNOT00000003714 1 1 1 80 X 75500260 75500279 TTTGTGTTCTTTGCATGGAC 58 75491861 75500219 ATAGGACAAGTGGAACTTCTG 58 NA Rattus norvegicus 81 LOC685849 ENSRNOG00000012068 ENSRNOT00000016068 2 1 1 82 5 75004562 75004580 TTCGTGCCCAGTATGAAGG 60 75000258 75004518 AGGCATGATCCCTTCTTTAGG 60 NA Rattus norvegicus 81 Cpsf3 ENSRNOG00000052418 ENSRNOT00000091061 2 1 1 80 6 43369569 43370742 TCTGTTGATCAGTCACTTCCA 59 43370782 43370802 GTCCGTCCTTTGAAACTTGTC 60 NA Rattus norvegicus 81 Lcp2 ENSRNOG00000005620 ENSRNOT00000046135 3 1 1 80 10 19028959 19031615 ATGATGAAGATGATGTGCACC 59 19031655 19031675 ATCTCGAAGGAAATGTGTTGG 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870,ENSRNOT00000020414 1 2 2 80 9 78314761 78315447 GACAACACAGTAACTCATGTC 57 78314701 78314719 TCCATTGAGAATCCCAAGC 58 NA Rattus norvegicus 81 Olr341 ENSRNOG00000050798 ENSRNOT00000072071 3 1 1 60 1 229765037 229765056 CTCATCTACACCATCACCCT 59 229764996 229765014 AGTCCAAGACAATCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099384.2 ENSRNOG00000056621 ENSRNOT00000080099 2 1 1 175 14 10694137 10694156 AATGTGACTGCTTTGATGGC 60 10686343 10686361 GAGGAACTCCTGTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 1 2 2 80 2 78037568 78038096 GAAGAAAGAGAAAGAAAGCGAG 58 78038675 78038694 TTGTTGCTTCCTTGTTTCTG 57 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 3 2 3 80 3 150050879 150050898 ATCAGCTACAAGCCCTACAG 59 150050552 150050836 TTTCTTCATCCAACCGCTG 59 NA Rattus norvegicus 81 Tex30 ENSRNOG00000011658 ENSRNOT00000015600 3 1 1 83 9 50868152 50868171 CTTCGAGCGTGTTAGTTAGC 59 50867701 50868106 AAACCCAATTCAGCGAACG 60 NA InUTR Rattus norvegicus 81 Gimap6 ENSRNOG00000033338 ENSRNOT00000049038 2 1 1 80 4 78342646 78342665 AAATCCACTGGAGTCCAGTG 60 78339921 78342603 TCTTCTTCCATCACTGGGC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 1 4 6 80 15 36972824 36976235 CATGGGAGATGCATTTAGCC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Twist1 ENSRNOG00000011101 ENSRNOT00000014763 3 1 1 165 6 53401920 53401938 GAGCTGGACTCCAAGATGG 60 53402063 53402582 GGAAACAATGACATCTAGGTCTC 59 NA InUTR Rattus norvegicus 81 Ado ENSRNOG00000000639 ENSRNOT00000000791 3 1 1 80 20 22448226 22448247 GAAGACCTTAACATCGCACC 59 22448289 22448308 GATGTGCATGTAAGTGACCG 59 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324,ENSRNOT00000068328 3 2 2 80 3 162492292 162492313 CTGAGGATTGAGATTGAGAAGC 59 162491464 162492253 CATGGTCAACTCCAAGTTGTG 60 NA Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 1 1 1 80 10 62304518 62305234 CACCACCTAGTGGTAGTGAG 59 62305272 62305295 AAGTAGAGATACCATAGAGAAGCC 59 NA Rattus norvegicus 81 Tex21 ENSRNOG00000038496 ENSRNOT00000088808 3 1 1 83 6 99257874 99257894 ACAGAATCTCAGAGTTTCGGA 59 99254401 99257829 CAGGTGCTCCCTTAGACAG 60 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 2 1 1 61 5 77605865 77605886 GGATACAAAGCTAGAGAACTGC 59 77605097 77605844 GTCTGGGATCTTGATTTCCT 57 NA DesignNoJunction Rattus norvegicus 81 LOC498933 ENSRNOG00000011671 ENSRNOT00000015541 2 1 1 80 19 32376406 32379111 TACTGAGACAACTTCAGCGA 59 32379154 32379172 AGGAGAATCGATCCGTGTC 59 NA Rattus norvegicus 81 Rn60_6_1087.2 ENSRNOG00000052719 ENSRNOT00000090480 3 1 1 60 6 99249912 99249930 GGAACACATTGACCTGGAC 59 99249952 99249972 GAAAGTCAAGCCATAGATGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0592.1 ENSRNOG00000051296 ENSRNOT00000076286 1 1 1 80 X 58335563 58335687 GAGGAACTTCTTTCTGCATAGTG 60 58335724 58335745 TAGCACCAACACAATATGAGTG 59 NA Rattus norvegicus 81 LOC679894 ENSRNOG00000042340 ENSRNOT00000061664 2 1 1 60 14 6582806 6582827 AGAGAATGTTAAAGGAGGAGAG 57 6582767 6582786 GGAAACAGGTGATTTCAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 3 2 2 80 6 10992996 10994442 CGCAGACTCTGGTTCTAGG 60 10994484 10994504 GTCGTTATGGTTAGCTCTGAC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000076173 3 1 6 60 14 44526228 44526248 TCTACCACTGAGCTAAATCCC 59 44526270 44526288 AGCTTTGCTTTACCGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003616.1 ENSRNOG00000038697 ENSRNOT00000035149 1 1 1 60 1 116919070 116919088 AGTCTCACTTCACCCTCCA 60 116919028 116919046 AAGTTGCACTTGAAGGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrgn ENSRNOG00000010688 ENSRNOT00000014404 3 1 1 115 8 40016595 40016615 ATAAAGAGTGGAGAGTGTGGC 60 40016299 40016521 CGTTCAGTTCTGGCTTAATCTC 60 NA InUTR Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000072584 1 1 2 80 1 225828091 225828110 CTGTGAAGCAATTCAAGCAG 58 225825561 225828049 ATATTGCCTCCATCATCACG 58 NA Rattus norvegicus 81 Ssc5d ENSRNOG00000016687 ENSRNOT00000022480 1 1 1 80 1 72446024 72451196 GCCTTCCAGACATAGATGAC 58 72445963 72445981 CTTTGGACAGACTCCTTCC 58 NA Rattus norvegicus 81 Rps3 ENSRNOG00000017418 ENSRNOT00000023935 2 1 1 80 1 164440109 164440128 CTACTCTGGAGTTGAAGTCC 57 164439836 164440068 CCAAGAACATTCTGTGTTCTG 58 NA Rattus norvegicus 81 Wac ENSRNOG00000018698 ENSRNOT00000058852 2 1 1 80 17 60895600 60895619 CCTCAGACTAACACAGTCCC 60 60893859 60895560 TACTGGAGTACTAACCTTTGGC 60 NA Rattus norvegicus 81 Glis2 ENSRNOG00000004766 ENSRNOT00000006680 3 1 1 82 10 11158674 11158775 AATGCCAGGTACAAGATGC 58 11158610 11158628 AAGCTCTTGTTACAGGTGG 57 NA Rattus norvegicus 81 Cdca2 ENSRNOG00000025302 ENSRNOT00000031163 1 1 1 80 15 44410335 44410354 TCTCCACAGTAACCGTAGAG 58 44408725 44410294 GGGAAGATGATGACTTTCCTG 59 NA Rattus norvegicus 81 Rnaseh1 ENSRNOG00000008584 ENSRNOT00000011819 3 1 1 80 6 47924249 47924268 AAGACGTGATCAACAAGGAG 58 47924311 47925047 CAGGAATGTGCATCCACTG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 2 2 2 80 9 61022385 61023943 GGAAATCATAAGACAAGCTCCT 58 61022326 61022345 TCCATGTCACCTTGATCCTC 59 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 1 2 2 80 8 67741612 67742496 CTTCTGCTAAAGCTGATGGA 58 67742536 67742557 CATGATGAATGTGATGATGCTG 58 NA Rattus norvegicus 81 Rhpn2 ENSRNOG00000011885 ENSRNOT00000016148 3 1 1 80 1 91616888 91624028 GAGAACCTTCTGAAAGTCACC 59 91624069 91624088 CAGGTCTGAGTTGACAAAGC 59 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115,ENSRNOT00000042781 3 2 2 80 19 28292573 28293224 AACTTCTATCGCAACCTGC 58 28292511 28292529 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 1 2 2 80 1 89468713 89468731 CAGGATCAAATCTCCCAGC 58 89467652 89468670 CTGTTCTCATTGGGATCCAG 58 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 2 2 2 80 1 101071337 101071355 GAAGGAGTCAGCCATTGTG 59 101071399 101071498 TGTTCACCATCTGTGTTGG 58 NA Rattus norvegicus 81 Psmd10 ENSRNOG00000057649 ENSRNOT00000083150 1 1 1 80 X 112328573 112328592 GAAGCTGGATGAGTTGAAGG 59 112324950 112328531 AATGCTGATTCTGCTGTCTG 59 NA Rattus norvegicus 81 Psmd10 ENSRNOG00000057649 ENSRNOT00000083150 3 1 1 80 X 112323348 112323457 AGAATAGGCATGAGATTGCTG 58 112323288 112323309 TTGCTGTAGCATCATAATGGTC 59 NA Rattus norvegicus 81 Rag2 ENSRNOG00000004623 ENSRNOT00000006097 1 1 1 73 3 91195186 91195208 AGGAAGTAGACTTCATACCTCTC 59 91196807 91196825 TGTAACCATCTGCAGGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 2 1 1 90 1 101406343 101406363 ACTACCTGTATCCTACACAGG 58 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 Plek ENSRNOG00000005214 ENSRNOT00000007044 2 1 1 80 14 100165321 100168085 CTGCTTCACAGGTAGTGGT 59 100165259 100165277 GAGATCATGAGGCCTTCCT 59 NA Rattus norvegicus 81 Xpo1 ENSRNOG00000009935 ENSRNOT00000014062 2 1 1 80 14 108034167 108034185 CCTTCCTAAAGGAGCATGG 58 108034228 108036324 ACATGTAATGAAGAGCCTCC 57 NA Rattus norvegicus 81 L3mbtl3 ENSRNOG00000011720 ENSRNOT00000061404 2 1 1 80 1 20045325 20045344 TGGCAGTCCTACCTTAAGAC 59 20045385 20047749 CGGGATCACTGTTATGTTCTG 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 2 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833085 TGTCAATGTTTGTGACCCA 58 NA Rattus norvegicus 81 Pramef12 ENSRNOG00000037035 ENSRNOT00000048232 2 1 1 80 5 162385403 162385425 GGATGTCTTACAAACCATACTGG 59 162385462 162385969 ATTCGAAGTCGGTAATTACTGG 58 NA Rattus norvegicus 81 Inmt ENSRNOG00000011250 ENSRNOT00000015316 2 1 1 82 4 85382539 85384581 GGGAGACAGAAGCAGATGG 60 85382475 85382494 TCTTGGTCACATCACACCTC 60 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243,ENSRNOT00000013400 3 3 3 80 3 57852882 57852905 TCTGATTAGCATCTCTACTGATGG 60 57852943 57853272 AACTCCATGCTATCCTGTGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 2 2 2 80 12 11503837 11504009 TTGAAAGATACCGGCTACCA 59 11504051 11504070 CACTATTTGGCCACGAACTG 60 NA Rattus norvegicus 81 LOC685351 ENSRNOG00000038499 ENSRNOT00000058683 2 1 1 84 13 84757294 84757733 ATCCAGTTCCAGACAAAGGT 59 84757229 84757247 CAGTCTCTACCACCACGTC 60 NA Rattus norvegicus 81 Rn60_X_0689.1 ENSRNOG00000026617 ENSRNOT00000036763 2 1 1 60 X 67981197 67981215 CCCGACCTGTACAAATCCT 59 67981236 67981257 CAAAGGGATCTTCAATGGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 3 2 2 80 15 4894722 4894746 TACTGATGAGTATCTTCCTGAACAG 60 4894540 4894685 CACTTTCTTCCTGTTGGACAG 59 NA Rattus norvegicus 81 Dhrs3 ENSRNOG00000015736 ENSRNOT00000021155 2 1 1 81 5 162835406 162835748 CAATTCTGGACCACCAAGG 59 162835793 162835811 CAAGCACAGAATTGAGGCA 59 NA Rattus norvegicus 81 Mmp20 ENSRNOG00000021896 ENSRNOT00000033306 1 1 1 81 8 5842772 5842790 CTGATGTGGCTAACTACCG 58 5842830 5845995 GTGTACTTAGAGACTCTGTATGTC 58 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000055051 ENSRNOT00000083649 3 1 1 60 4 1641088 1641107 TATGTACCTAAAGCCCTCCT 57 1641128 1641148 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 3 2 2 81 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041798 177041818 TCTCCTTAAACTTGTCTGCAG 58 NA Rattus norvegicus 81 Zdhhc18 ENSRNOG00000058156 ENSRNOT00000081470 3 1 1 80 5 151837878 151837898 CTTCACCTGTAAGATGTTCCG 59 151836409 151837836 TGATGGTCAAACCGTTCCA 60 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000091510 3 1 2 212 6 8887114 8887134 CTTCTTGTTGACCTTCGCC 59 8887310 8887328 AACATGGACAACTCTTCCG 58 NA DesignRelaxed Rattus norvegicus 81 Bambi ENSRNOG00000016066 ENSRNOT00000021801 2 1 1 80 17 56906361 56906380 AAGACATGTGCAATTACCGA 58 56905868 56906320 GGTATCTGTTTCCTTGTCCTG 59 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 2 2 2 89 10 104455968 104455988 CTGCTGAAACTGAAAGAACTC 58 104456039 104456439 CATCAGGACAGTAGCTGTG 58 NA Rattus norvegicus 81 Ccbl1 ENSRNOG00000016097 ENSRNOT00000021865 1 1 1 80 3 8754449 8754878 CCTTTAGGAAAGGTATTCTCTAGGA 59 8754393 8754412 AGAGATGCACAAGACATCGT 60 NA Rattus norvegicus 81 Cdh23 ENSRNOG00000033087 ENSRNOT00000048029 3 1 1 80 20 29984952 29985603 TATGAAGGCTATGGAGTGATCAG 60 29984894 29984914 GACGGTTAGGTATATCAGCCC 60 NA Rattus norvegicus 81 Cdyl2 ENSRNOG00000042888 ENSRNOT00000068440 2 1 1 80 19 49159220 49197720 TGTCATATCAAGGGTTGAAAGG 59 49159161 49159184 CCTTTCCATCGGATAAGATATTCC 59 NA Rattus norvegicus 81 Ovca2 ENSRNOG00000003111 ENSRNOT00000004150 3 1 1 188 10 62020463 62020481 CTGAGAGTACTGTGCCTCG 60 62020065 62020083 TTGCTCCTCTGGAGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr402 ENSRNOG00000046228 ENSRNOT00000041987 3 1 1 60 3 16001904 16001922 GAATCTGCAAAGCCTTGTC 57 16001941 16001964 CCATAGTACAGAGAAACAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911776 ENSRNOG00000048071 ENSRNOT00000074282 1 1 1 60 1 156327081 156327099 CTTGAAACGCAGATCCGAC 59 156327039 156327057 CGAGTTGAGCAGTTCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndrg1 ENSRNOG00000007393 ENSRNOT00000010811 1 1 1 80 7 107741343 107742344 CCTACTCAAGATGGCAGAC 57 107739095 107739114 ACAAAGTACTTGAAGGCCTC 58 NA Rattus norvegicus 81 Hk2 ENSRNOG00000006116 ENSRNOT00000008813 3 1 1 80 4 113571953 113573161 TCTCGGATATTGAAGAGGATAAGG 60 113571896 113571914 CCTGCAATGGATTCAGACC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 2 2 6 80 5 47907010 47907029 AGCACAAGTTATCCTTCCTC 57 47907071 47907161 GAGCCTCTTCTAACAACCTC 58 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000016220 3 1 2 80 3 149245823 149245841 TTTGCCAGGAGAATGAGGG 60 149245885 149247825 CAAAGCCTTCATCTGTGGC 60 NA Rattus norvegicus 81 Tctex1d2 ENSRNOG00000001758 ENSRNOT00000002397 1 1 1 80 11 71598263 71601516 CAGCAAAGGTTTAGACCCT 57 71598201 71598221 AGAATATTCAGCACCTGTCAG 58 NA Rattus norvegicus 81 Olr230 ENSRNOG00000019599 ENSRNOT00000026506 3 1 1 60 1 171179675 171179695 GCTGATCCTTTGTTCCTACAC 59 171179715 171179735 TTGAGCTGATGGAATCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000074608 3 1 2 60 13 91954394 91959724 AAGAAGCCTCAGAAGAAACAG 58 91959743 91959764 GCTGTAAATCTTCTCTGATGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 1 2 2 80 13 75118022 75118727 TCACTGACCAGAAGACCCT 60 75118768 75118789 TGCCATAAGATACTGGTAGGAC 59 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000050532 ENSRNOT00000074397 2 1 1 60 17 35477470 35477488 AGATGCCGAGAGGAATGAG 59 35477512 35477530 AGAAACTGAAGAGCAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem164 ENSRNOG00000012787 ENSRNOT00000068431 3 1 1 82 X 113949745 114016371 ATGATGCATATCTTCCTCCTG 57 114041551 114041570 CCATTCAACATGTGCATCTG 58 NA Rattus norvegicus 81 Cap1 ENSRNOG00000013492 ENSRNOT00000018711 1 1 1 80 5 140561255 140561609 ATGTCAAAGTTCAGGTGATGG 59 140561195 140561214 TCTTACTCAGGTAAGCGTGG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 2 2 2 81 9 10742951 10742969 GGATGACACTGAACCTGAG 58 10741400 10742908 TTCAGGATACTGCATAGTGAG 57 NA Rattus norvegicus 81 C1ql2 ENSRNOG00000046863 ENSRNOT00000071305 1 1 1 108 13 36378894 36378912 TACCACATCCTCATGCGTG 60 36379567 36379585 CATAATTCTGGTCCGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Krt71 ENSRNOG00000049495 ENSRNOT00000068533 1 1 1 81 7 143349774 143350183 TGCTGAAGAAGGATGTGGA 59 143349711 143349729 TTGATGTCCTGGTCCATGG 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 2 2 2 80 12 17254618 17257980 ATTCAAGAAGGATGTGCAGG 58 17258023 17258041 ACATCTGGGATGTCACCTC 59 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000026163 1 1 2 91 19 37885154 37904545 GACAAGCAAGAAGTCATCACC 60 37904598 37904616 GTAAAGGAGGGTCTGGCAG 60 NA Rattus norvegicus 81 AABR07030798.1 ENSRNOG00000045888 ENSRNOT00000075706 2 1 1 94 10 104933478 104935460 TATGGTCCCAGGTTTGAGG 59 104935518 104935536 CATTTGTGGTCATGCTGGG 60 NA Rattus norvegicus 81 Tyrobp ENSRNOG00000020845 ENSRNOT00000028284 2 1 1 80 1 88875481 88875500 GTGCTTTCTGTTCCTTCCTG 59 88875988 88876144 CATCCTGGGTAATTGTCACTC 59 NA Rattus norvegicus 81 Upf1 ENSRNOG00000020134 ENSRNOT00000027268 2 1 1 80 16 20836879 20836898 CAGTACCAGAACATCTTCGG 58 20836940 20837401 ATCTTGAGTCTGTGACTCCT 58 NA Rattus norvegicus 81 Sparc ENSRNOG00000012840 ENSRNOT00000017486 3 1 1 81 10 40751210 40751859 GGAGACAGGGTTACCTGTG 59 40751147 40751165 CTCGACAGTTTCCTCTGCA 60 NA Rattus norvegicus 81 Prorsd1 ENSRNOG00000004145 ENSRNOT00000005504 2 1 1 121 14 113938953 113940211 CATCCGGAGGTGTTTACAG 58 113938850 113938871 AGAACTGTGACTAACCAATAGC 58 NA Rattus norvegicus 81 Flg2 ENSRNOG00000050967 ENSRNOT00000074518 3 1 1 80 2 193483916 193484679 CGGCCAATTCTGAAGAATCC 59 193484722 193484740 CCTTCGGTCATGATCTCGA 59 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167,ENSRNOT00000074985 2 2 2 83 1 81343470 81343488 GTTCCTACGAAGAGACGTC 57 81343536 81344485 TTTCCCAGCACATCTAAGC 58 NA Rattus norvegicus 81 Dhrs13 ENSRNOG00000009673 ENSRNOT00000012825 2 1 1 113 10 65332886 65332904 CATCTTCATGGCCTTGGAC 59 65332652 65332810 GAACTGATCCCTGCATTGTG 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 3 3 3 109 13 48801361 48804630 AATACGCTCTTCCAGTTCCC 60 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 1 4 4 80 1 50828658 50828677 GAACTTATGGAGCAGCAAGC 60 50828717 50864549 ACTCTGCTAATTTCTTCGTCCA 60 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 2 2 2 127 20 7296595 7298837 GAATATCACAGCCGACCCT 59 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 3 2 2 85 10 104997967 104997987 GGAACACCATTTCCCTATCAC 59 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392,ENSRNOT00000070981 3 2 2 107 10 13417263 13417281 GTACAGCAAGGATGCTGAG 58 13417352 13417868 CCAGAGTCACCCTTACAGG 59 NA Rattus norvegicus 81 Rfc3 ENSRNOG00000001088 ENSRNOT00000001444 1 1 1 80 12 1464212 1464231 ATCCAGGAGATGCTGAAGAC 59 1464270 1465888 CAGTAACACCACTTTGAAGTCTC 60 NA Rattus norvegicus 81 LOC102554255 ENSRNOG00000050376 ENSRNOT00000050154 2 1 1 60 4 88232276 88232296 TCTATCTGTATCACCTGCCTC 59 88232317 88232336 AGGTAATGGGACTGATTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 1 2 4 97 14 85876553 85879203 AAAGTTCTCAGCTGTCGGA 59 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000027846 1 1 2 80 16 21142670 21143069 GTTGATATCACAGCAAATCCC 57 21143109 21143129 TCTTGACAATACAGCTCTGAC 58 NA Rattus norvegicus 81 Psenen ENSRNOG00000020941 ENSRNOT00000028438 2 1 1 80 1 89016345 89016555 CCAAATCAAAGGCTATGTTTGG 59 89016286 89016304 AAGATGGTGATCCAGGTGG 59 NA Rattus norvegicus 81 Vsx2 ENSRNOG00000011918 ENSRNOT00000015889 2 1 1 86 6 108287551 108287569 GATGTTTCCTCCAGTGACC 58 108287619 108291966 AAAGATTGTCCTGTGTCGC 59 NA Rattus norvegicus 81 Lipf ENSRNOG00000019448 ENSRNOT00000027969 2 1 1 80 1 252289308 252289328 GAGGAAATACATGGTCCAGGA 59 252289367 252290450 CCATTTCATCAAAGCTGAAAGC 59 NA Rattus norvegicus 81 Atp8b1 ENSRNOG00000024952 ENSRNOT00000038652 3 1 1 80 18 60063639 60063658 TTCTGCTATTGTCCAGCTCC 60 60062332 60063599 ACTTCAAATTGGTTTCTCCGTC 60 NA Rattus norvegicus 81 Ifrd1 ENSRNOG00000050997 ENSRNOT00000073910 1 1 1 80 6 60145840 60145860 CGCATCCATTGAAACAATGAG 59 60145647 60145798 TCAAGAACTTCTGGTCCGT 59 NA Rattus norvegicus 81 Olr631 ENSRNOG00000032712 ENSRNOT00000050173 3 1 1 60 3 76718462 76718482 ACATTTGCTATACCTCCTGTG 58 76718422 76718443 TTTCTCTTTACAAGCAGATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000076860 2 1 3 81 13 77626338 77626356 GAGCAGTACCATGAAGTGC 59 77626399 77626795 GAAATGAAGGAAGCAAACCTG 58 NA Rattus norvegicus 81 Trem2 ENSRNOG00000013578 ENSRNOT00000018351 2 1 1 82 9 14615344 14615362 TCTACCAGTGTCAGAGCCT 60 14612742 14615298 ATCTAGAGGGTCCTCCAGC 60 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 1 1 1 81 14 20468891 20474555 TTCGTCCCTATTCTCCCTC 58 20468828 20468846 CTTTGGAGCCATACACAGG 58 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 2 1 1 82 14 20468891 20474555 TTCGTCCCTATTCTCCCTC 58 20468827 20468845 TCTTTGGAGCCATACACAG 57 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171,ENSRNOT00000008759,ENSRNOT00000049771 2 3 3 80 15 11864042 11864061 TACTGTGCCTGTATGTCTCC 59 11860985 11864002 CTCTATTGCACTTATTCTGCCT 58 NA Rattus norvegicus 81 Vom1r70 ENSRNOG00000047591 ENSRNOT00000075356 1 1 1 60 1 103064552 103064570 TCTATCTCTGTCACCTGCC 58 103064593 103064612 AGGTACTGGGACTGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npc1l1 ENSRNOG00000049955 ENSRNOT00000075827 3 1 1 80 14 86349577 86349596 AACCTTCTGATCACCTTGCT 59 86346605 86349535 AACATCTGGTCCCAGATAGC 59 NA Rattus norvegicus 81 Lcat ENSRNOG00000019573 ENSRNOT00000026585 1 1 1 96 19 37915658 37915754 TTGATAACACCAGGGTTGTC 58 37915581 37915599 GAGTAGGTCTTGCCAAAGC 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093,ENSRNOT00000067866 2 2 2 80 10 46633250 46633270 GCTCCCTACTCTACTCTACAG 58 46630567 46633209 CAGCCTAGCAATCTGTTCTG 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 1 2 2 80 15 4891259 4893410 AATGAAAGAGGGCTTACCTG 58 4893569 4893588 GCAGCTTCATTAAGAACTGC 58 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721,ENSRNOT00000091057 2 2 2 81 11 65807246 65810867 CTCTGCATTGAGCAATGCA 59 65807183 65807203 GAAGTTCACAATGGTTGAGGT 59 NA Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 1 1 1 80 1 31412897 31412915 CCACTGGAATGACAGACTG 58 31412959 31415627 AATTTACATCAGCCCACCA 57 NA Rattus norvegicus 81 Cat ENSRNOG00000008364 ENSRNOT00000011230 3 1 1 80 3 93399274 93399294 CACTGAAGATGGTAACTGGGA 60 93397773 93399233 AAGGATGGAAACAACATGGC 59 NA Rattus norvegicus 81 AABR07017140.1 ENSRNOG00000027633 ENSRNOT00000029140 2 1 1 80 15 12599594 12599613 TGAAGGAACTTCCATCTCCC 59 12589032 12599555 CATCAAGCTGTATAGTTGCAGTC 60 NA Rattus norvegicus 81 Sntg2 ENSRNOG00000004928 ENSRNOT00000066904 1 1 1 80 6 49123871 49135710 AAACAGATTGAAACGAAGGAGC 60 49123812 49123830 CTTGGCAGCAATGAAGGAG 59 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 2 2 2 81 18 56639043 56639756 CTTGTGTCAAGGTGGATGG 59 56638980 56639000 TTATGCAGTTCTGTACAAGGC 59 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 3 2 2 84 18 56637974 56637992 AGATGAAGATCCAAGCTGC 58 56636600 56637174 AAGAGGGTCACTTTGTGAC 57 NA Rattus norvegicus 81 Rap1a ENSRNOG00000032463 ENSRNOT00000047836 2 1 1 81 2 208210857 208210876 CAGTTCAGTTTGTTCAGGGA 58 208208086 208210815 TCTACTTCGACTTGCTTTCTG 58 NA Rattus norvegicus 81 Tmem203 ENSRNOG00000010894 ENSRNOT00000014454 3 1 1 60 3 2475389 2475407 TCGTCTCTTCCAAGATGGG 59 2475431 2475449 GGTGAGAACCCAGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 2 3 3 81 16 20112540 20112558 TTTCTTCTGCAAGGAGGTG 58 20112602 20112706 AAAGTCTAACGTGATGGGTC 58 NA Rattus norvegicus 81 LOC100362226 ENSRNOG00000024412 ENSRNOT00000032589 1 1 1 60 3 2405332 2405350 GTAGGAGCTGTGATCAACC 58 2405369 2405392 CAGAGATGATATACACGTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoa4 ENSRNOG00000055909 ENSRNOT00000080658 1 1 1 80 8 50538238 50538260 ATTAAACATGCCGATGACCTG 59 50538298 50538320 CTCTGTTTCCTTGGTTAGATGTC 59 NA Rattus norvegicus 81 Hhex ENSRNOG00000016595 ENSRNOT00000022384 1 1 1 87 1 256104470 256104488 CAAGATGTTGCAGCTCAGC 60 256104729 256106593 AGGATTCTCCTGCTTCAGTC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240,ENSRNOT00000082161,ENSRNOT00000034969 3 4 4 80 4 15710914 15720302 GATAACAATGTGCTGGAGGA 58 15710853 15710875 GAGTCCAAAGATAGACCATAAGG 58 NA Rattus norvegicus 81 Cav3 ENSRNOG00000005798 ENSRNOT00000007601 3 1 1 95 4 144383179 144397817 GAGGACATTGTGAAGGTGG 58 144397876 144397894 GAAAGTGGTGTAGCTCACC 58 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 1 2 2 60 14 107393319 107393337 CACCTTTGACAAACACGGA 59 107393359 107393379 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faxdc2 ENSRNOG00000027259 ENSRNOT00000036481 2 1 1 80 10 43505690 43509026 GACAAGAATGAGCCAGTAGAC 59 43505630 43505648 GAAAGAGATGACGCTCTGG 58 NA Rattus norvegicus 81 Gpc2 ENSRNOG00000001367 ENSRNOT00000001849 1 1 1 80 12 19596817 19597526 CTCCGCCTACAGATAACCC 59 19596755 19596773 GCTGACCACATTTCTTCCG 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978,ENSRNOT00000013333 2 3 3 85 15 60732498 60733222 ACATCAGACAGTGATGGACC 60 60728665 60728683 AGCAGAGTCTTTCCACTCG 59 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 1 1 1 82 8 115163471 115163489 CCAAAGGAGCCACTATCCC 60 115163535 115163733 CTGGACAGAGAAACCCTGG 60 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 2 1 1 83 8 115163471 115163489 CCAAAGGAGCCACTATCCC 60 115163536 115163734 CCTGGACAGAGAAACCCTG 60 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 2 2 2 80 5 173291895 173291915 ATAACATCCTGAAGGAGAGGG 59 173291953 173292136 TCCTGAACTCTTTATCCAGATCC 60 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 1 1 1 80 14 86527424 86527701 ATATTCAGAACTCAGACTACGAGG 60 86527740 86527758 GTAGGTCAGGCTTCACAGG 60 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 2 2 2 80 6 18900542 18900561 ATTCCTGCCCATATTGACTC 58 18900603 18912487 ATCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Cope ENSRNOG00000020178 ENSRNOT00000027381 3 1 1 80 16 20863394 20863414 GATACTTGTCACAGCTGAAGG 59 20863257 20863354 GATCGAAATCGTTCTCCTTGG 59 NA Rattus norvegicus 81 Zfp641 ENSRNOG00000032447 ENSRNOT00000045473 3 1 1 125 7 139903264 139903284 GGATGTGTCCTTATGCTTCTC 59 139902601 139903177 GGGATGGGAAACCTCAGAG 60 NA Rattus norvegicus 81 Ccdc77 ENSRNOG00000037206 ENSRNOT00000056200 1 1 1 80 4 152861776 152863653 CTCTATAAGGCAACCATGAACAC 60 152861718 152861737 AGCTCTCCTGTTGCTATCAC 60 NA Rattus norvegicus 81 Nrk ENSRNOG00000008880 ENSRNOT00000057049 3 1 1 80 X 109990351 109992735 ATGCTGAAGTCAAGATAGTGGA 59 109992773 109992794 TACCAATGAAGCTATTTCTCCG 58 NA Rattus norvegicus 81 Ssu72 ENSRNOG00000017829 ENSRNOT00000024349 1 1 1 80 5 173181650 173181668 CCAGAACTGCAAAGACCTG 59 173181708 173182162 GAGTTCAGATCTTCTACAACCTG 59 NA Rattus norvegicus 81 Mlh3 ENSRNOG00000006699 ENSRNOT00000033493 2 1 1 80 6 109071579 109071600 TGTCTTCCACAATAATTCCTCC 58 109069623 109071539 AATGTTTGTGGTAAGACCGT 58 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253,ENSRNOT00000016891 2 2 3 81 2 243704534 243705923 CCAACTTCAAACCAGGTGAC 59 243705966 243705985 GTGAGAGGACTCAGACAGAG 59 NA Rattus norvegicus 81 Akr1c3 ENSRNOG00000017531 ENSRNOT00000023739 3 1 1 80 17 69761233 69767071 ATGCAACCGAAGAGAATCTC 58 69767114 69767132 AATCAATATGGCGGAACCC 58 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 1 2 2 80 14 86473690 86474248 CCAGATGTCCTGCCTAACC 60 86474292 86474310 GCAGTTGACGACAATCCAG 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 1 2 2 80 1 29457448 29460726 GTTCATGGCTTGGGAAAGG 59 29460770 29460788 CTGACGAAGATTTGCCCTG 59 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 1 1 1 80 6 37646984 37647003 GTCCTCCAAGATTCCGAGAG 60 37647043 37648174 TTGAATTGCATCTCGAATCTCC 59 NA Rattus norvegicus 81 Dnajc3 ENSRNOG00000010352 ENSRNOT00000014182 1 1 1 80 15 104222365 104223424 AATGTATGATGAAGCCATCCAG 59 104223464 104223483 TCTAAGCCTTCCCGAATCTG 59 NA Rattus norvegicus 81 Cyp17a1 ENSRNOG00000020035 ENSRNOT00000027160 2 1 1 80 1 266425942 266426119 CAGAAACTGGAGAAGCTAATCTG 59 266425884 266425903 GTCTATGGACTCCTTGTCGT 59 NA Rattus norvegicus 81 Gtf2h5 ENSRNOG00000018007 ENSRNOT00000024211 3 1 1 88 1 46979562 46983604 AGTGCTTATAGAATGCGATCC 58 46983651 46983672 CTTGAATGATGAACTTCTTCCC 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 3 3 3 80 15 12582389 12583429 AGACATTGGAGAATGACGAC 58 12583472 12583490 TCTATGGCTTAGGGTCTGC 59 NA Rattus norvegicus 81 Hypk ENSRNOG00000015703 ENSRNOT00000021091 1 1 1 83 3 113424598 113424757 GAAGATCTGGAGTTGATAATGACAG 60 113424798 113424816 CACATTGCCCATGTGTTCC 60 NA Rattus norvegicus 81 Dpp9 ENSRNOG00000050748 ENSRNOT00000075386 3 1 1 80 9 10857745 10857763 TGACTTCCAGTTTGTGCAG 58 10857806 10863408 CTACCATAAGGCATTCCCAG 58 NA Rattus norvegicus 81 Ndst1 ENSRNOG00000019014 ENSRNOT00000025881 2 1 1 80 18 55965786 55966436 TGTGCTCCTCAATCCTATCAG 59 55965726 55965745 TTGAAGGTGTACAGTCCCAG 59 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000077291 3 1 4 62 20 2501335 2502702 GAAGCCATTCCATCTGCAC 59 2502726 2502746 TTCTTGGAGAAGACGTTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 1 1 1 80 7 75328482 75333675 GTCACTTCCCTTGGAACTC 58 75328420 75328441 GTACTGAAATCTCAGCTCTAGG 58 NA Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 2 1 1 108 5 173640821 173641567 TGAGAACCAGGACTGTGAC 59 173641633 173641657 CCAGATTCTACTTCATTCTTCTGAG 59 NA InUTR Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 2 2 2 80 20 27718060 27720736 CTGATGAACCAAGGGTACCT 59 27717999 27718018 CAAGACCAGAGACTTCTCCA 59 NA Rattus norvegicus 81 RGD1564425 ENSRNOG00000038259 ENSRNOT00000058238 1 1 1 60 3 123997020 123997040 CAGCAGATCAAACCTTACACC 59 123996980 123996999 ACCGTTTCTCATACAAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467,ENSRNOT00000081958 3 2 2 80 9 82440878 82441073 TGGCAACTCTGATTTCTCCT 59 82441114 82441134 GTTGTGGACGTAGAAACAGAG 59 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484,ENSRNOT00000089294 1 2 2 80 11 81377444 81378174 AGAACTGGCTCAACAGATCC 60 81377383 81377401 CCTCCAATGCAAGCATGAC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075974 3 1 9 87 4 14040685 14040703 ATAAACGGAGGTCACAGGC 60 14040748 14070560 GTAAGCTACAAATAGTTCACAGAGG 60 NA Rattus norvegicus 81 Cradd ENSRNOG00000008507 ENSRNOT00000063946 1 1 1 78 7 36407102 36407120 AAGCTGGAGAAGGCAAGAG 60 36395966 36395984 GCTTCTCAGGCAAATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Cradd ENSRNOG00000008507 ENSRNOT00000063946 3 1 1 101 7 36407123 36407143 AGGAATTTCCCTGGGTAAGAG 59 36395966 36395984 GCTTCTCAGGCAAATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561748 ENSRNOG00000028214 ENSRNOT00000030164 3 1 1 80 7 17859329 17859349 AAGCAAGTGGAAGAAACATGG 60 17853390 17859289 ATACATAGACCATGGCAGGAG 59 NA Rattus norvegicus 81 Slc25a43 ENSRNOG00000012756 ENSRNOT00000017026 3 1 1 82 X 123362830 123382152 AAAGATGCAGGCTCAAAGC 59 123382198 123382216 GTCTGAAGCAGTCAACTGC 59 NA Rattus norvegicus 81 Usp37 ENSRNOG00000022720 ENSRNOT00000032719 1 1 1 80 9 81768982 81769002 TAAGGATGCAGAGGAAATGAG 58 81764714 81768943 CCTTGAGAAGATTTCATAGCTG 57 NA Rattus norvegicus 81 RT1-M10-3-ps ENSRNOG00000051398 ENSRNOT00000039155 1 1 1 80 20 2291740 2291971 GGACAGCAATGATTATCACACC 60 2291681 2291699 TATTGACCGCGAAGGAAGG 60 NA Rattus norvegicus 81 AABR07073181.1 ENSRNOG00000021437 ENSRNOT00000039341 1 1 1 80 5 155871443 155871463 ATACGCTCTCCTACACATCTG 59 155871505 155871779 GCATGATGTTATTGCCCGT 59 NA Rattus norvegicus 81 Appbp2 ENSRNOG00000027654 ENSRNOT00000033684 2 1 1 80 10 72512307 72512328 TTGGTATCATTACCCACATCCT 59 72510662 72512271 CCTCTAATATAAGTGCTTTCACCC 59 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 1 1 1 83 3 8832806 8835816 TCAAGAAGTTCCAGGAGGAC 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Adh7 ENSRNOG00000032959 ENSRNOT00000015870 3 1 1 81 2 243512602 243512620 GATGCTCAGCTATGACCCA 59 243512664 243513362 ATCTCTGCTCTTCCAACCAC 60 NA Rattus norvegicus 81 Mettl10 ENSRNOG00000017137 ENSRNOT00000023121 3 1 1 61 1 204836773 204836794 AATAACCTCCTGTAATTGGACC 58 204831911 204836754 GTTCAAATCCTTCACTGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 LOC100364002 ENSRNOG00000050457 ENSRNOT00000072249 2 1 1 80 X 124000709 124001351 CTTGCGAACAAGGAAGGAC 59 123999894 123999913 GATCTTCTCATCCGGAACCA 59 NA Rattus norvegicus 81 Ccni ENSRNOG00000002125 ENSRNOT00000002924 2 1 1 80 14 16358558 16362834 CTTCAGAAAGCACAGATGGAC 59 16362876 16362894 AGACTGCAGAGCAGAAAGG 60 NA Rattus norvegicus 81 RGD1559644 ENSRNOG00000042808 ENSRNOT00000068281 3 1 1 81 5 162750985 162751004 AATTCCATCTACCCTGAAGC 57 162742604 162750944 TATGGTTCCCAAAGTTATCAGG 58 NA Rattus norvegicus 81 Rn60_X_0675.1 ENSRNOG00000051104 ENSRNOT00000076769 1 1 1 60 X 66668192 66668211 AGTCCTGCACAAATTCACTG 59 66668151 66668169 GGCTGATTGACCTCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0675.1 ENSRNOG00000051104 ENSRNOT00000076769 3 1 1 60 X 66667512 66667533 GTTAAGTCACAAGAAGGATCAC 57 66667473 66667492 GCAAGATACCTCCAATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epm2a ENSRNOG00000040242 ENSRNOT00000061930 1 1 1 80 1 5449250 5505163 ACTGGGAAGGAAATGGACC 59 5505204 5505225 GGAGACAATAAACACCATCCAC 59 NA Rattus norvegicus 81 Kbtbd6 ENSRNOG00000047604 ENSRNOT00000071455 2 1 1 60 15 61731931 61731950 GCCCAGAGGAATTAAAGGAC 58 61731973 61731991 AAAGACTTGAGCTGTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 2 3 3 80 18 56899339 56899359 CGAAGACCTCTTCAATTTCTG 57 56899398 56900108 ATTCTACTGATCATCTGGTCAG 57 NA Rattus norvegicus 81 Hdac1l ENSRNOG00000009568 ENSRNOT00000012854 2 1 1 80 5 147721742 147721760 CTACGCCGTTAACTACCCA 59 147719636 147721698 ACTTTGGACATGACTGGCT 59 NA Rattus norvegicus 81 Treml1 ENSRNOG00000040109 ENSRNOT00000018138 2 1 1 80 9 14597727 14598326 GGAAATTCAGGCATGGACC 59 14597665 14597685 CCTCATATGTGGTATGTCCGA 59 NA Rattus norvegicus 81 Rpl26-ps2 ENSRNOG00000039783 ENSRNOT00000061041 3 1 1 60 1 31527940 31527959 ATAATGTTCGGTCTATGCCC 58 31527899 31527918 TAGTGTCCTCGAACAACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290415 ENSRNOG00000038078 ENSRNOT00000057935 1 1 1 60 15 73180486 73180505 TTGGCCTAAGCAGAATTGGA 60 73180445 73180466 GTCTTCATTCCAAAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290415 ENSRNOG00000038078 ENSRNOT00000057935 2 1 1 60 15 73180342 73180363 TCTCTGTGATTTCATCACTGTC 58 73180303 73180321 ATTGAGCAAGCCTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912534 ENSRNOG00000001748 ENSRNOT00000002382 2 1 1 80 11 82859842 82859947 TTTACCCTGTAGACTTAGGTGAC 59 82859784 82859803 CACCATCATCCAAGGTACCA 60 NA Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 3 2 2 80 1 31979807 31980077 TTCTGATTGATGAGGTGGAG 57 31980120 31980138 CACGGATAGCATCTGATGG 58 NA Rattus norvegicus 81 Chst8 ENSRNOG00000022919 ENSRNOT00000037700 3 1 1 85 1 90616322 90616340 GACCCTATAGAGCTCAGCC 59 90543562 90543988 CTCAAGTGGCTATCATGCTG 59 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 3 1 1 81 2 88130637 88130657 AAGTATAACACCTTCGGAGAG 57 88129787 88130594 TCTCCCGTCCTATCTTCAG 58 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762,ENSRNOT00000077544 3 2 2 80 1 245877514 245877535 ATGTTCTACTTAGTAGAGCACC 57 245862399 245877473 TAAATCACCAAACTCGCCC 58 NA Rattus norvegicus 81 Rpl22l2 ENSRNOG00000029173 ENSRNOT00000040366 2 1 1 60 3 122285542 122285563 CAAGGAGACTTATGAACTTCGT 58 122285583 122285602 AGACTCTGAACCATCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl22l2 ENSRNOG00000029173 ENSRNOT00000040366 3 1 1 60 3 122285346 122285366 AACAGTTTCTACGGGAGAAGG 60 122285385 122285406 ACAACATTCCCAAGATTTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmm2 ENSRNOG00000002615 ENSRNOT00000003542 3 1 1 80 10 7071512 7071532 CAGAAGACCAAGATTGGAGTG 59 7068919 7071473 TTTCTCAACCACATCATTTCCC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097,ENSRNOT00000044956 2 2 2 87 8 111840630 111843633 TCCAGTAACAGTTACAGAAACC 58 111840564 111840582 TTTCCTTGTCGTGGTTAGC 58 NA Rattus norvegicus 81 Fpr3 ENSRNOG00000042605 ENSRNOT00000064917 1 1 1 60 1 59801660 59801679 AACTGTTGAAGAAGTGCTGG 59 59801619 59801638 CCTGATGGTCCCTCTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3h ENSRNOG00000040153 ENSRNOT00000061786 3 1 1 80 6 108753701 108753720 CCTCTCCAAACTCTTCAAGC 59 108753760 108756051 CAGTAAGTGTTAATCTGGCCTG 59 NA Rattus norvegicus 81 Map3k7 ENSRNOG00000005724 ENSRNOT00000007654 3 1 1 80 5 47232161 47232179 CACTACCTCAGGACCAACC 59 47232222 47237548 GAGCCATTGGTATCTGTGGA 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000084324 3 1 4 60 20 3115993 3116011 TGACCATCTGGTCAGAACC 59 3116033 3116053 ACTCTTTGGTAGGAGTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000075887,ENSRNOT00000087506 2 2 4 80 13 78196455 78196473 ACATCATTGACCTGCTGCT 60 78089875 78148182 CTTCCTTTGAGGTCTTTAGAAGAG 59 NA Rattus norvegicus 81 Thumpd1 ENSRNOG00000014946 ENSRNOT00000020077 1 1 1 80 1 189459586 189460602 AGAGTTGGCAGGAATAGTAGG 59 189459526 189459547 TCTACTACCACCGTGTATTCTG 59 NA Rattus norvegicus 81 LOC689701 ENSRNOG00000046189 ENSRNOT00000044669 3 1 1 80 8 44664777 44666216 ATATCTGAAGACTGGGATGTG 57 44666257 44666276 TCCTGCAATACATGTCTCAC 58 NA Rattus norvegicus 81 Lzic ENSRNOG00000016200 ENSRNOT00000021822 1 1 1 80 5 166437470 166437488 GGAAAGAGACCTGCATACC 58 166437531 166437929 TCATCATCTGTCAGCTTCTC 57 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 1 2 2 80 X 124442856 124442876 TATCAGCTTTGGTGTGATTGC 59 124436103 124442817 GGTTTCAAATCAATGTGTCTGG 59 NA Rattus norvegicus 81 LOC100910668 ENSRNOG00000046526 ENSRNOT00000074267 3 1 1 84 9 14951090 14951807 CAAGTGACTTCGGAGAGGA 59 14951852 14951873 TTGTCCCAAATATCTTCCACTG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000017757 ENSRNOT00000023948 2 1 1 85 9 82070930 82070948 TAAGCTCAGTGCCTCAGAC 59 82070999 82071123 TTCCTTTAGAATGATGCTGGG 58 NA Rattus norvegicus 81 Prkd2 ENSRNOG00000016434 ENSRNOT00000022360 2 1 1 80 1 78783726 78789922 CTTATCACGCAGATTCTGGT 58 78789963 78789983 CACATTCTCTGGTTTCAAGTC 57 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 2 1 1 67 X 72650456 72650761 GAAGAAGGAGTTCGCACTG 59 72650792 72650810 TGAGTTGCTGTGTCAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 3 1 1 80 3 112675044 112675062 AGAGTGTCTTCTCGACAGC 59 112674854 112675004 AAGGTTTGGTACTAGGTTCTCAG 60 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 2 2 2 65 2 232129925 232135436 CCACTGGAAGACTCTCAGG 59 232135464 232135483 GTCTCTTCTGTATCAGCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Immp1l ENSRNOG00000004829 ENSRNOT00000006406 2 1 1 80 3 96002491 96002511 AGAGTAATTGGTTTGGAAGGG 58 96002552 96023075 TGTTGGTACATAGTTACGGC 58 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036,ENSRNOT00000013366 2 2 2 80 15 103766274 103766292 GTTTCTCCAAGGACATCGG 58 103747168 103766230 CAACAAGGAGCAAGGTCTG 59 NA Rattus norvegicus 81 Rn60_7_1411.3 ENSRNOG00000054046 ENSRNOT00000083662 3 1 1 86 7 143239555 143239573 GAAGGAGTACCAGGAGCTC 59 143238805 143239506 ACCTTTCAACCTTCCAACAG 58 NA Rattus norvegicus 81 Cep126 ENSRNOG00000021839 ENSRNOT00000029887 1 1 1 84 8 6261511 6261529 CTATCTGTGCCCTCTCAGC 60 6258710 6261466 GCTTCTTGTACATAGTACAGCC 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741,ENSRNOT00000067333 3 3 3 80 7 81991901 81991920 ATGGAGAGTGTCTGCATTCC 60 81978550 81991859 TTCTGCATCTTGCACATCTG 59 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154,ENSRNOT00000064483 2 2 2 80 14 92361750 92361769 CCAGTAAATGCTAGGCAAGC 59 92344372 92361707 GAGCAAGGGAACCTTTCTG 59 NA Rattus norvegicus 81 Rn60_X_0698.2 ENSRNOG00000023879 ENSRNOT00000035857 2 1 1 60 X 68874560 68874578 CTCGTGCTATTGTTGTGGT 58 68874518 68874537 GTGTTCCTGGAGGAGATCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r5a ENSRNOG00000000068 ENSRNOT00000000078 2 1 1 80 13 110036076 110036094 ATCGATAAGATCCTGCCCA 58 110035474 110036036 CAGAGCTACAATAGTCTGATTCC 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 3 2 2 81 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599,ENSRNOT00000085031,ENSRNOT00000089972,ENSRNOT00000082402 1 4 4 80 6 109674114 109674132 CTGTGGAGCTCACATACCC 60 109674174 109674316 AGATGATCCCGAATACCTGTG 60 NA Rattus norvegicus 81 Rpl38 ENSRNOG00000033686 ENSRNOT00000050489 3 1 1 60 14 104453010 104453029 GTAAAGTTCAAGGTCCGCTG 59 104453050 104453070 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrtn ENSRNOG00000048651 ENSRNOT00000072592 1 1 1 169 9 10305522 10305540 TGCTGTCTGTCTGGATGTG 60 10306130 10306148 AAGTTCTCGAAGCTCCACC 60 NA DesignNoJunction Rattus norvegicus 81 G3bp2 ENSRNOG00000002433 ENSRNOT00000003346 1 1 1 80 14 17507828 17509554 CTCCTGAAGGATCTGTTCCA 59 17509593 17509615 CGGAATCTCCAAATACTTCATCC 59 NA Rattus norvegicus 81 Blnk ENSRNOG00000013967 ENSRNOT00000019014 3 1 1 80 1 260187393 260192872 AATGGCGAAGAGTACTTTGGA 60 260187333 260187354 CTGACTGTCAATAAGAACCAGG 59 NA Rattus norvegicus 81 Gdi2 ENSRNOG00000018091 ENSRNOT00000024952 1 1 1 80 17 70310605 70313638 CCTTATGGCCAATGGTCAG 58 70310543 70310563 CCTTCGATCACTTTGAAGTCC 59 NA Rattus norvegicus 81 Gcfc2 ENSRNOG00000006888 ENSRNOT00000009104 1 1 1 80 4 112671478 112671497 AGGAAGATGAAAGCCAAGAC 58 112671538 112676129 GGTCTATACTTTGTCCCTCTG 57 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 1 1 1 80 1 266061914 266062037 CTACCTGCAGAAGGAGGAG 59 266061852 266061870 GCGTGGTGAATGCTAATGG 60 NA Rattus norvegicus 81 Olr213 ENSRNOG00000048519 ENSRNOT00000046171 3 1 1 60 1 170840603 170840623 TGTGGTCTTCTACTATGGGTC 59 170840563 170840581 CATTGTCTTGGAGTTGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scx ENSRNOG00000021812 ENSRNOT00000029768 3 1 1 225 7 117519614 117519632 CTACATTTCTCACCTGGGC 58 117519819 117520724 GTCTTTGCTCAACTTTCTCTG 58 NA DesignRelaxed Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671,ENSRNOT00000075775 1 2 2 80 12 2905172 2906613 TCATTGTCAAAGGCACTGAG 59 2906656 2906674 CCTGATCCAGTTTCTGGTG 58 NA Rattus norvegicus 81 Tk1 ENSRNOG00000047314 ENSRNOT00000071420 1 1 1 80 10 106819236 106819332 TGGAGAAAGAGGTGGAGGT 60 106819174 106819198 CTGAAGACTTCTTAAAGTAGCACAG 60 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 1 1 1 64 1 228142912 228143205 TTCAGATACTTGGGCAGCC 60 228143233 228143251 AAGTTGGAACTGGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 1 2 4 60 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 MGC105649 ENSRNOG00000050251 ENSRNOT00000073569 2 1 1 95 3 114773050 114773912 CCGACGTGGTTATTGATCG 59 114775247 114775265 TCCATTCCTGGTTGATGGT 59 NA Rattus norvegicus 81 Hspb2 ENSRNOG00000010402 ENSRNOT00000013960 3 1 1 66 8 55177752 55177770 GAATTTGCCAACCCTAGCC 59 55177281 55177299 GGATCTCTTCTGGCAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr633 ENSRNOG00000049129 ENSRNOT00000040604 3 1 1 60 3 76751997 76752017 TAATGAGCCAACGTATCTGTG 58 76752039 76752057 TGGATACAAGACCCTACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365828 ENSRNOG00000047434 ENSRNOT00000074913 2 1 1 60 2 178868526 178868546 AAGACTGGTCATCCTAGCC 59 178868567 178868588 GATATCCACAGGAATCACTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Iqcf6 ENSRNOG00000042065 ENSRNOT00000068240 2 1 1 101 8 115328553 115328572 CTAAAGACCAAGGCCATGGA 60 115328632 115329192 GGCTGTCTTCTCTAACTTTACAC 59 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304,ENSRNOT00000046771 1 3 3 80 14 17553202 17553222 ACAATCTTTCTGCAGTTGCTC 60 17553261 17553791 TCTCGTCCACTCTGTAATTCTG 60 NA Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 2 1 1 80 10 46791430 46798898 CCTTACAGAGGAATATCCAACC 58 46798938 46798957 TTCCGAGTTAAGAAAGGGTG 58 NA Rattus norvegicus 81 Car11 ENSRNOG00000021017 ENSRNOT00000028540 3 1 1 81 1 101685606 101685755 CTCTTTGTCAACGTGGCTG 60 101685796 101685818 TGTAGGAGATTCGGGTAATAGTG 59 NA Rattus norvegicus 81 Hoxb5 ENSRNOG00000008010 ENSRNOT00000010724 2 1 1 84 10 84152824 84153517 TCAGCCACGATATGACTGG 59 84153565 84153583 AATTCCTTCTCCAGCTCCA 58 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 2 2 2 80 1 189171375 189173015 CAGTGTCAACCATCTTGCT 58 189171313 189171332 TCCTATATCCAGAACCCGAG 58 NA Rattus norvegicus 81 Mrc2 ENSRNOG00000006548 ENSRNOT00000055137 1 1 1 80 10 93566151 93566171 CAAGTGATCTACAGTGATGCC 59 93566213 93566602 CTGCTCAAACCTGTTGGTG 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000058007,ENSRNOT00000082401 1 4 4 80 8 70129677 70136466 GAGAACACTATCAGCTGCC 58 70136510 70136528 GGACTCATTGCAGTAGTGG 58 NA Rattus norvegicus 81 Il15ra ENSRNOG00000018706 ENSRNOT00000025252 3 1 1 82 17 70466275 70467726 CAACCTCAAGTGTATCAGAGAC 59 70466214 70466232 GTTGTGAGGTCACCTTTGG 59 NA Rattus norvegicus 81 Fgfr1op ENSRNOG00000055093 ENSRNOT00000085501 3 1 1 80 1 53124294 53126536 GTGACAAACTCGATGACCT 58 53124232 53124253 ATGCAACATCTTCCAGATAGTC 58 NA Rattus norvegicus 81 Vom1r7 ENSRNOG00000061043 ENSRNOT00000091192 3 1 1 60 1 60088116 60088136 GCCAGATGTATGTCCATAAGC 59 60088076 60088097 TGATGGTGATTGCTTGAAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053185.1 ENSRNOG00000004787 ENSRNOT00000006385 2 1 1 80 3 95856526 95856544 ACCAATCACAGTCTACGCA 59 95850760 95854226 TTATAGTCACTATGCCTACAGACAG 60 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 2 2 2 80 10 85944796 85944818 ATAGATAGTACTGACCGGAATCG 59 85943762 85944756 ATCCTGAAGTGCCTCATGG 60 NA Rattus norvegicus 81 Tas2r129 ENSRNOG00000031107 ENSRNOT00000051110 1 1 1 60 4 167024571 167024590 CTCATGTGTCTTGATCTGGG 58 167024530 167024549 CCACAACACAGAAAGAAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 3 2 2 80 1 154152103 154165291 TCTTAAATCTGGAGAAGGAAGC 58 154152044 154152062 ATTCCAATCTGGGCAACAG 58 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 3 2 2 86 8 116100626 116101239 AAGAGGCTGGAGAAGTTACG 60 116101288 116101306 TAGTTCCTGCTCCAGTTCG 59 NA DesignNoJunction Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373,ENSRNOT00000073428 3 2 2 80 6 111273532 111273947 ATGTTGTCATTGATACTTGCCG 60 111273473 111273496 CAGATCCTTTATCTACTTTGCTCC 59 NA Rattus norvegicus 81 RGD1561699 ENSRNOG00000047839 ENSRNOT00000068306 1 1 1 84 14 15424607 15425380 AATCAAGTCCTAGGGTGCC 59 15424541 15424561 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Mir3565 ENSRNOG00000035486 ENSRNOT00000053609 1 1 1 66 14 66923130 66923148 TACTCATACCTCGCAAGCA 59 66923177 66923196 TGTAGTGATAACGTAGCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Styx ENSRNOG00000007956 ENSRNOT00000010612 2 1 1 80 15 19714477 19714497 TACAGATGATGTCACCACTCC 59 19714534 19717393 CATATGTTCTCTTCACACTACCTG 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 1 2 2 80 7 25972147 25980642 CTCAAAGATCAGGTGTTACCAC 59 25980682 25980701 CACCAGCTTATTTCTCACGG 59 NA Rattus norvegicus 81 Gpr39 ENSRNOG00000021586 ENSRNOT00000038811 1 1 1 60 13 42009454 42009473 TCCAATATGTCCATCTGCAC 58 42009496 42009514 AGATGCTGGACTGGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tle6 ENSRNOG00000006350 ENSRNOT00000008360 1 1 1 80 7 10983880 10983898 AGAAGACATCAGTGAGCCC 59 10984019 10984619 TCCCAGAACAAGGGATTCAG 60 NA Rattus norvegicus 81 RT1-O1 ENSRNOG00000032664 ENSRNOT00000048036 1 1 1 118 20 3162200 3162218 TGGAACCTTCCAGAAGTGG 59 3162300 3162449 GATGGAGGAGCCATCTCAG 59 NA Rattus norvegicus 81 Slitrk1 ENSRNOG00000009209 ENSRNOT00000012195 1 1 1 60 15 93306402 93306420 GCTTGCATGAAATCGTTCC 58 93306360 93306378 ATATGCAGTCGTTTCACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ska1 ENSRNOG00000015275 ENSRNOT00000020637 3 1 1 80 18 70179529 70179550 TGTGGAACATCTCAAAGAACAC 59 70177140 70179490 AGATCTGGCTTATGAGTCGAG 59 NA Rattus norvegicus 81 Rpn1 ENSRNOG00000046345 ENSRNOT00000073429 2 1 1 80 4 120009852 120009870 TCTTTGGAGGGTGGAAGAC 59 120009911 120013747 ACTGGTCACCCAGATTATAGAG 59 NA Rattus norvegicus 81 Med10 ENSRNOG00000017150 ENSRNOT00000023161 3 1 1 90 1 36112807 36112825 AGTTCGTGGAGAACATTCG 58 36111177 36112753 ATGAAGTTCAGCTTCTGGC 58 NA Rattus norvegicus 81 Rn60_20_0028.1 ENSRNOG00000059667 ENSRNOT00000087688 1 1 1 60 20 2791213 2791231 CCTTCTCTGGGACTCTCCT 60 2791171 2791191 ACAGTCATCGAGACATTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nip7 ENSRNOG00000020391 ENSRNOT00000027653 2 1 1 80 19 39258087 39258106 GGAAAGTTTACCAAGACCCA 58 39258147 39258754 CACTTTATACTTGGCGTAGGG 59 NA Rattus norvegicus 81 Lpl ENSRNOG00000012181 ENSRNOT00000016543 3 1 1 80 16 22554699 22554718 GACTCTGTGTCTAACTGCCA 60 22550648 22554657 ATACATTCCTGTCACCGTCC 60 NA Rattus norvegicus 81 Pcyt2 ENSRNOG00000036684 ENSRNOT00000054952 1 1 1 80 10 109789915 109789934 GTACAAGGGCAAGAACTACC 58 109789665 109789872 ACTTCTGAAACATACCGGC 58 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 2 2 2 82 1 104151376 104152939 CCTGCAGTTCCAACAATCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Galnt16 ENSRNOG00000004589 ENSRNOT00000006460 2 1 1 80 6 104243926 104243945 CCTCCACCTTAATGTCTTCC 58 104243988 104248028 TTCTCCATTTCTGCTTGCC 59 NA Rattus norvegicus 81 LOC100909594 ENSRNOG00000046558 ENSRNOT00000074363 2 1 1 61 3 159095919 159095937 TAGTGACAGGAGCCATTGG 59 159096421 159096440 GACAACTTCTTCCGACTGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912571 ENSRNOG00000049598 ENSRNOT00000075306 2 1 1 80 11 82890044 82890299 CTGGATAGAGGCCAACCTG 60 82889982 82890005 GAATAACAGACAGTTGTCATGAGG 60 NA Rattus norvegicus 81 LOC100912571 ENSRNOG00000049598 ENSRNOT00000075306 3 1 1 80 11 82891875 82892038 GAGAGCTCTTTAGGGAAATTACG 59 82891817 82891835 AGAGACCCAGGATCTCCAG 60 NA Rattus norvegicus 81 AABR07055827.1 ENSRNOG00000059620 ENSRNOT00000091611 3 1 1 94 7 10629668 10629689 ATGACCTTGTCACCGAGAG 59 10629747 10629765 TGCTTCTTCACCCATCAGG 60 NA Rattus norvegicus 81 LOC100912365 ENSRNOG00000004066 ENSRNOT00000005407 1 1 1 60 13 104283498 104283518 GAACTTTGTCCATCAGAGGAG 59 104283458 104283476 TTCCCACTTCTCTTCAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005506.1 ENSRNOG00000025122 ENSRNOT00000036330 1 1 1 80 1 183630559 183630580 CCTTCAATGATACGTTTGTCCA 59 183630484 183630521 GAGAGGACTCATCTTCATTCCA 59 NA Rattus norvegicus 81 Uso1 ENSRNOG00000002301 ENSRNOT00000003277 2 1 1 80 14 17424152 17424174 CGTAGCTTCATCTACTTTACTGG 59 17423785 17424114 TCCAAGCGGTATTTCTTAGAC 58 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000024981,ENSRNOT00000025013 3 2 2 80 19 29732975 29743763 CTCACCTGAAAGATGCTCTC 58 29732914 29732933 GACCACCATTCTTGAATCCC 59 NA Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 2 1 1 80 1 53465880 53471335 GACTGGAATAAGCTGTATCGC 59 53471376 53471395 AAAGTGGAAGGTGTCCTCAG 60 NA Rattus norvegicus 81 Nfe2l1 ENSRNOG00000008830 ENSRNOT00000067542 2 1 1 80 10 84689834 84690541 AAATGCAGGCTATGGAAGTG 59 84689773 84689791 AGTTGGTGGTAAGAGGGTC 59 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 3 2 2 83 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 2 4 4 75 2 250224218 250224596 CAACGTGTATCATCTCAAGTG 57 250224163 250224181 GTAGTGAAACCGATCTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Klhl21 ENSRNOG00000003334 ENSRNOT00000004508 2 1 1 80 5 169185232 169186874 TACTTCGTCAGGGATGACTC 59 169186914 169186935 GTTCATAGATGGGATCTTGTCC 58 NA Rattus norvegicus 81 Eml6 ENSRNOG00000037462 ENSRNOT00000056706 2 1 1 80 14 114300307 114300325 TTCAGCCCAGATGGATCTC 59 114297596 114300266 TTCTGTCATATCTCTGACTCGG 59 NA Rattus norvegicus 81 Sesn3 ENSRNOG00000008173 ENSRNOT00000011008 1 1 1 80 8 12861022 12862374 ACTTTGGGATTGTGGACTC 57 12862418 12862436 CATCTTCCCTGTCTTCCTG 57 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 3 1 3 89 7 42331550 42337817 GTCCTGAGAAAGGGAAAGC 58 42337869 42337888 TTACAAGCGAAATGAGAGCC 59 NA Rattus norvegicus 81 Rpl18a ENSRNOG00000018795 ENSRNOT00000025421 3 1 1 80 16 20294465 20294483 GTACTTTGTGTCGCAGCTG 60 20294526 20294636 GGTGACTTCTCAAACACCTG 59 NA Rattus norvegicus 81 LOC690507 ENSRNOG00000015637 ENSRNOT00000071772 3 1 1 80 3 149809742 149809760 GTCCATAACCATTGCCTCC 58 149809802 149810407 AGGTCATTCATCTGAACAGAG 58 NA Rattus norvegicus 81 Ano3 ENSRNOG00000004731 ENSRNOT00000006349 1 1 1 80 3 101876442 101876689 TCTTCTTCATGATCTCCTTGGT 59 101876383 101876401 ATGCAAACTGCTCCATGAC 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342,ENSRNOT00000024162,ENSRNOT00000091561,ENSRNOT00000081940,ENSRNOT00000074087 3 6 6 80 17 77201196 77201214 GAGATGAAGCAGACCATCG 58 77201257 77210815 ACAGTACACCTCCATCTGAG 59 NA Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 1 1 1 126 16 20672610 20673167 CTAGACCAAGCTCACCGTC 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 Sec14l5 ENSRNOG00000002917 ENSRNOT00000061253 2 1 1 81 10 10599526 10599544 GTCTGGGACAGATGGACAC 60 10599385 10599483 TCGTTGACAGAAAGAACATGC 60 NA Rattus norvegicus 81 Kxd1 ENSRNOG00000019971 ENSRNOT00000027053 3 1 1 82 16 20662292 20664683 AGGATCAGGACACTGAAGG 58 20665817 20665835 TCCTCTAGGAGTGAACCCT 59 NA Rattus norvegicus 81 AABR07061336.1 ENSRNOG00000028235 ENSRNOT00000031768 1 1 1 97 4 116933639 116933657 TTGAGGAACCCAGTGTGAG 59 116935916 116935934 CAACTCTGGGTCCATGGAG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1309995 ENSRNOG00000008331 ENSRNOT00000011326 2 1 1 80 7 26316948 26316966 TCCAGAATTTCGAAGGCCA 59 26314914 26316908 TCTACAAAGTTCAGAGTGAGAGG 60 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 2 2 2 80 X 123496139 123496159 TACTTCAGAACCGTTGGAGTC 60 123496195 123496536 GATTAGGTTCATCCAATAGAGACTG 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282,ENSRNOT00000051342 1 2 2 80 17 69404146 69404165 TGTGAAACTGAACGATGGTC 59 69401977 69404106 GCTTTACTCTTGGGTAACTCTG 59 NA Rattus norvegicus 81 AABR07065012.1 ENSRNOG00000032248 ENSRNOT00000047825 3 1 1 60 6 103948965 103948983 CAGCAGAAGTGGAGGAGAC 60 103948923 103948944 TATCTTCTTGCCATTTCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bco1 ENSRNOG00000012027 ENSRNOT00000016880 1 1 1 80 19 49648466 49648485 TTCTATGCCACCACAGAGAC 60 49648527 49650381 CCGGTAATCAACCTTCTCCA 60 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738,ENSRNOT00000091681 3 3 3 80 2 196646171 196646190 GTCAGAAGGTCTCTTTGTGC 59 196646231 196646422 CCTTTACTCTGATCTGCACTG 59 NA Rattus norvegicus 81 Mir101b ENSRNOG00000035532 ENSRNOT00000053655 2 1 1 60 1 247263748 247263767 GGTTATCATGGTACCGATGC 59 247263785 247263808 CATTCTTCAGCTATCACAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334,ENSRNOT00000026394 1 2 2 80 18 55797272 55797291 CTCTCACAGCTCTACTTCTG 57 55797333 55800017 ATAATGAGAGTCCACCTCGT 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000009813,ENSRNOT00000091155 2 2 4 80 2 182032241 182034920 ACTCCGATAAAGTGGACCT 58 182032179 182032197 GTCTTAGGCTAGGAGGCTC 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000077663 2 1 4 60 2 182034335 182034355 TCATTTGTAGCTCCAATTGGC 59 182034295 182034314 AACAAACAAGTTGAGGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 L2hgdh ENSRNOG00000004857 ENSRNOT00000006473 1 1 1 80 6 92033252 92034045 AAGGAAATATTTATCCGGTCCC 58 92033193 92033211 AAATAGAGCCATCCAGCCT 59 NA Rattus norvegicus 81 L2hgdh ENSRNOG00000004857 ENSRNOT00000006473 2 1 1 80 6 92033251 92034043 GGAAATATTTATCCGGTCCCG 59 92033191 92033209 CCAAATAGAGCCATCCAGC 58 NA Rattus norvegicus 81 Mysm1 ENSRNOG00000026299 ENSRNOT00000039554 1 1 1 80 5 113921070 113921092 GGGATGTTAATTGTATTGGACGG 60 113919809 113921030 ATATGGCCTGCTCACATCC 60 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370,ENSRNOT00000083055 1 2 2 80 1 163081076 163082902 ATGGTGAATTCTGGATGACCT 59 163081016 163081035 AGGACGTATTAATCAGGCGG 60 NA Rattus norvegicus 81 Scaf1 ENSRNOG00000056946 ENSRNOT00000081430 3 1 1 81 1 100998376 100999844 GGGACACTGACAAGTATCTG 58 100998314 100998332 TAGTATGGCTTGATGGCCA 59 NA Rattus norvegicus 81 Cipc ENSRNOG00000011111 ENSRNOT00000014980 3 1 1 147 6 110975754 110975773 GAGGAAAGTCCCATCGAGAG 60 110975882 110985834 ACATTCTGAGCTCCCATCTG 60 NA Rattus norvegicus 81 Alb ENSRNOG00000002911 ENSRNOT00000003921 2 1 1 80 14 19182293 19182313 AAATATGAAGCCACACTGGAG 58 19181163 19182252 CTGAAATTCTGCAAGCACTG 58 NA Rattus norvegicus 81 Gdpd1 ENSRNOG00000060561 ENSRNOT00000088182 1 1 1 80 10 74358130 74360803 TCTCAAATACTGTGAGCTCC 57 74346952 74346970 TCTGTTCCTTCACACTTGC 58 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119,ENSRNOT00000075512 3 2 2 80 11 82694923 82695708 GTTGTCTGACGGAAGTCAC 59 82696363 82696383 TGGGATCTAATCTGTCCTCAG 59 NA Rattus norvegicus 81 Olr1624 ENSRNOG00000045711 ENSRNOT00000041733 1 1 1 60 15 26780668 26780687 TTACAAAGCCTGCATCACTC 59 26780627 26780645 AAACATTTCTCCCGCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 2 2 2 80 12 25500930 25500948 CTGCATCCTATTTGGAGCC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 RGD1565059 ENSRNOG00000021324 ENSRNOT00000086472 2 1 1 84 2 154491171 154505260 CATGGAAACAAGAGCCGTG 60 154491105 154491124 TTCTGTAGCCACACCTTACC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000088892 2 4 7 80 1 102930430 102930448 CTGTGACTGATATCGCTGC 59 102930490 102931619 CATATAAGCCCTTAACCAGCG 59 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 1 2 2 80 14 18703193 18703213 TTTAGTGGGAGATAACCCAGC 60 18702204 18703151 TCACTGCAGATGCCTACAG 60 NA Rattus norvegicus 81 Asic3 ENSRNOG00000008380 ENSRNOT00000011300 1 1 1 80 4 7292411 7292430 CTTGAGGACATGTTGTTGGA 58 7291145 7292371 CATTCGAGTAAAGATCACTGTG 57 NA Rattus norvegicus 81 Ctrl ENSRNOG00000019353 ENSRNOT00000026361 3 1 1 83 19 37907062 37907080 CTGAGCTACAACCAGAGGA 58 37906908 37907015 GGTGTTATCCTGCAGAGAC 58 NA Rattus norvegicus 81 Slc29a4 ENSRNOG00000001115 ENSRNOT00000001477 3 1 1 82 12 13922825 13923466 CTAGGATCACCACAGGTTACC 60 13922763 13922781 AGAGAAGAGCTGAAGCCAC 59 NA Rattus norvegicus 81 Npffr2 ENSRNOG00000003067 ENSRNOT00000004153 3 1 1 82 14 20149784 20153981 ATAGCCGTGGACAGATTCC 59 20149720 20149739 ATCACGATCATGACAAAGGC 59 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 2 2 2 80 16 6877765 6877784 TGAAGAAGTGAGCATAGCCA 59 6877825 6878778 ACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Tc2n ENSRNOG00000004754 ENSRNOT00000006371 3 1 1 80 6 125553487 125568136 ATTCATCCAGAGACATGACTC 57 125553427 125553445 CTTCTGTTACTGCCCTGAG 58 NA Rattus norvegicus 81 Med21 ENSRNOG00000001820 ENSRNOT00000002500 3 1 1 93 4 180966265 180966956 TACAGAAGAGTATGCCCAGC 59 180967011 180967030 AGACTCTTCACTGGGTAAGG 59 NA Rattus norvegicus 81 Mis12 ENSRNOG00000007725 ENSRNOT00000010144 2 1 1 60 10 57660368 57660388 AAGATAAGTGTCAGGAGACGA 58 57660410 57660428 TCCTGTTTGAGAAGCTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559588 ENSRNOG00000049331 ENSRNOT00000072303 3 1 1 80 12 19714488 19714508 CACTTCCTGAACAGAATCTGG 59 19714550 19714863 CTGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 Col4a5 ENSRNOG00000018951 ENSRNOT00000064478 2 1 1 80 X 112981216 112982563 CATGTTCAGTAAACCTCAGTCAG 60 112982601 112982621 TTCATGCATACTTGACATCGG 59 NA Rattus norvegicus 81 Fpr-rs4 ENSRNOG00000043056 ENSRNOT00000066769 2 1 1 60 1 86073827 86073845 ATGGTCTCAGAATCACCGA 58 86073869 86073887 TATCCAAGCTCCAACAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpo ENSRNOG00000008422 ENSRNOT00000011402 2 1 1 80 10 75110753 75110774 GGACTGATAACTACACCAAAGC 59 75109311 75110712 CAGTTGGGAACATGATGGG 59 NA Rattus norvegicus 81 Muc1 ENSRNOG00000020539 ENSRNOT00000027850 2 1 1 80 2 188545751 188545769 AAGTGAAGTCACAGCTCGT 59 188545811 188545941 TCTCATTCACATTGACTTCCG 59 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747 2 1 2 81 12 44932747 44933927 GAGTACCATTCAGAAGTTCATCAG 59 44933967 44933985 GGATGTCTTTCCTGTGCCT 60 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378,ENSRNOT00000060514 2 2 2 82 15 28487483 28487501 AGATGACTCTGCTGAGGAG 58 28487314 28487437 CATCCTTCAACTCCAGCTG 58 NA Rattus norvegicus 81 RGD1565904 ENSRNOG00000049116 ENSRNOT00000073735 3 1 1 80 11 83881073 83881177 TTACCCTGTAGACTTAGGTGAC 59 83881014 83881033 TCACCATCATCCAAGGTACC 59 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 1 1 1 60 8 43480643 43480694 GGGTAAAGCTGAAGACAAGG 59 43480602 43480620 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Rab33a ENSRNOG00000006698 ENSRNOT00000008868 3 1 1 80 X 135349198 135359628 GCGAGAAGATCAAGGTTCAG 59 135359670 135359689 TGCGGTAATAATGCTCAACC 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 3 2 3 81 13 78928337 78928355 TAGTCCCAAGTTCCTGGTG 59 78925972 78928294 CTCATCTACCAAGTCTCTGCA 59 NA Rattus norvegicus 81 Cct4 ENSRNOG00000009642 ENSRNOT00000012847 1 1 1 80 14 107771105 107771126 GTGACCATTACCAATGATGGTG 60 107771167 107771627 CAGTTCCACCAGCATTCTG 59 NA Rattus norvegicus 81 Cct4 ENSRNOG00000009642 ENSRNOT00000012847 2 1 1 80 14 107771714 107772400 TCTGCAGAAAGGTATACATCCA 59 107772439 107772459 TCGGTAAGGATTTCAAGACCC 60 NA Rattus norvegicus 81 AABR07009508.1 ENSRNOG00000021867 ENSRNOT00000032342 2 1 1 83 2 100955162 100955180 ACGACTACAGTTGCAAGGT 59 100955227 100955566 GGATGTCCATGGAAGGAGG 60 NA Rattus norvegicus 81 Tardbp ENSRNOG00000012455 ENSRNOT00000049822 3 1 1 80 5 165434733 165436234 AATTCTAAGCAAAGCCCAGAC 59 165434673 165434692 TTCAGCAGTCATGTCCTCTG 60 NA Rattus norvegicus 81 Nfam1 ENSRNOG00000022975 ENSRNOT00000037681 2 1 1 81 7 123871938 123871956 CACTGCTAAGACATGCCCT 60 123861010 123871894 CTGTAGGGACGTGTAGATGG 59 NA Rattus norvegicus 81 Pcyt1a ENSRNOG00000001762 ENSRNOT00000002403 1 1 1 80 11 71559317 71559335 GTTACGTAGACGAGGTGGT 59 71556629 71559273 CGACGAAATCAATCCGGTG 59 NA Rattus norvegicus 81 Acmsd ENSRNOG00000003884 ENSRNOT00000005206 2 1 1 80 13 44459728 44468286 TAGGGAAGGATAGAGTTATTCTGG 59 44468322 44468343 TAGACTCTATCAACTTCCCAGG 59 NA Rattus norvegicus 81 Ap5m1 ENSRNOG00000014148 ENSRNOT00000018972 2 1 1 81 15 25947093 25947111 AACTACACGAAAGTGTGCG 59 25947154 25947618 AAATGGGTAATTGGACCTCTG 58 NA Rattus norvegicus 81 Syn2 ENSRNOG00000008157 ENSRNOT00000011292 2 1 1 80 4 147174804 147174822 CAGCTATTGTCCAGGACTC 57 147174864 147187423 TTCCTTAAGTGTTCCACTCTG 58 NA Rattus norvegicus 81 RGD1562987 ENSRNOG00000018676 ENSRNOT00000025198 1 1 1 106 18 70982165 70982185 CCTGGAGCCATACATATACCC 60 70982253 70982736 TATCTGCACCCTTGCAGTC 60 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000029046 ENSRNOT00000042095 1 1 1 60 12 10966577 10966600 CGGATGAAAGTTAAGAAACTACCC 60 10966413 10966432 ACTTAAACCTCTTCAGGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Mir199a2 ENSRNOG00000029459 ENSRNOT00000044190 1 1 1 60 13 80125627 80125646 TGTTTCCAAGGAGAGGACAG 59 80125666 80125687 AGAGAAACACTGGATATGAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmtk2 ENSRNOG00000025155 ENSRNOT00000046381 1 1 1 80 12 12432368 12432386 TGTTATCTCACCTCCGACC 59 12430356 12432330 CTCTATGTAATCCTCCTTGTATCTG 58 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000029086 ENSRNOT00000044223 1 1 1 60 4 1471283 1471303 ACCAGCACTTATGTCAATGAG 58 1471323 1471343 GGACTGTGATGTTAATACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905,ENSRNOT00000080600 1 2 2 80 2 251011314 251011332 AAAGTGTACAGACAGAGGC 57 251011376 251017724 CTTGGCTTCCTGATCTCTG 58 NA Rattus norvegicus 81 Olr799 ENSRNOG00000012214 ENSRNOT00000059651 2 1 1 60 4 68805436 68805454 ATGTGAAACCCAAGCAGAC 58 68805475 68805496 GAAATCATCAAGGAAACTACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432,ENSRNOT00000085655 1 3 3 80 18 63036455 63039322 ACTTTGTGCACAGATTCCC 58 63040959 63040978 GGTGAATCACTCCGAATTCC 59 NA Rattus norvegicus 81 Rn60_4_2163.2 ENSRNOG00000042507 ENSRNOT00000034180 1 1 1 60 4 150301920 150301938 CCTGAAGCGTTTACTGCTG 59 150301878 150301897 AGTTTCTCAATCAGGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc29a3 ENSRNOG00000000568 ENSRNOT00000000689 3 1 1 80 20 30324050 30324070 TTTAAACTCCGAAACTGCTCC 59 30304870 30324011 GTAGCTCTCAAAGTAGTTCAGG 58 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 2 2 2 80 2 102726667 102726685 ATTGTTCAGGAGAGGCAGG 59 102726140 102726624 CAAGCCAAGATGATGTGCTC 60 NA Rattus norvegicus 81 Dhodh ENSRNOG00000015063 ENSRNOT00000066733 2 1 1 81 19 42068662 42070749 CTCTGACATGCTGGAAGTG 58 42070794 42070812 GCCGTTCTTGTCAAATCCT 59 NA Rattus norvegicus 81 Tm7sf2 ENSRNOG00000020989 ENSRNOT00000028485 1 1 1 80 1 221426996 221427014 TTCCTGTTGTACCATCCAC 57 221426732 221426953 GATGTAGTAACCAACAGCCT 57 NA Rattus norvegicus 81 RGD1560242 ENSRNOG00000036615 ENSRNOT00000054776 2 1 1 80 1 241424258 241424277 GATATGGAGGATCCCAAGGT 58 241397980 241424216 TACCCATCTTGGACTGTCAG 59 NA Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794,ENSRNOT00000065614 3 2 2 92 20 30942726 30942744 TAATGCCTACCTTCGCCTG 60 30940667 30940686 TCATAGATGCCAGCTTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Mettl17 ENSRNOG00000025512 ENSRNOT00000064907 2 1 1 80 15 28293495 28293513 ATTGTCACCTCTGTTGTCC 57 28293557 28293655 AGCGATATAAATCCCTGCC 57 NA Rattus norvegicus 81 Adnp2 ENSRNOG00000053370 ENSRNOT00000078496 1 1 1 80 18 76647868 76652551 GCTGCTGAAGGATCTTAAAGG 59 76647808 76647828 TCCCAAAGAGAAACATCTCCC 60 NA Rattus norvegicus 81 Pcmtd2 ENSRNOG00000017404 ENSRNOT00000023989 3 1 1 88 3 177361119 177361139 GTGCAGAAAGAACATGAAGAG 58 177361187 177365761 ATCTTGGTCAACTTCTCTTCC 58 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266,ENSRNOT00000017550 2 2 2 80 X 122952626 122952645 ACCGGATCTCAGTATTCCAC 59 122952683 122960247 GGCTCATAGAACAATCTCATACAC 60 NA Rattus norvegicus 81 RGD1561137 ENSRNOG00000030143 ENSRNOT00000043621 2 1 1 60 3 21984036 21984056 CAGTACAAGTTACTGGAGCCT 60 21984077 21984096 TATCCACACCAGCAAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r49 ENSRNOG00000050887 ENSRNOT00000046111 3 1 1 60 1 67660741 67660760 AATCAGCCCTAATCACTCCA 59 67660780 67660801 ACCAATGTACTTGATGACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000075324 3 1 2 102 4 55398566 55398584 TCTGTGTCCATCATGGTGG 59 55398220 55398502 CTATGGTTGTCAAGATTGCCG 60 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 3 1 1 109 7 11322225 11323283 CTCTGAGTACCCGACATGG 59 11323356 11323374 TGTTCTGTTTGCGAAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Apba3 ENSRNOG00000020466 ENSRNOT00000027784 3 1 1 80 7 11314689 11314795 ACAGAGACAAGAGAAATCCAC 58 11314629 11314648 GTATACTGGCTGTTCCTGTC 58 NA Rattus norvegicus 81 AABR07042616.1 ENSRNOG00000050034 ENSRNOT00000044037 2 1 1 80 19 341838 342490 TAACTTCTATCGCAACCTGCA 60 341778 341796 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 1 2 2 80 X 72686384 72686544 CAAGTCAGGGAACAAGGAG 58 72686588 72686606 CTGGCGTCTCTTTATTGGT 58 NA Rattus norvegicus 81 RGD1564379 ENSRNOG00000042501 ENSRNOT00000064861 1 1 1 60 3 3592660 3592680 ACCAAGTACAACAACTTCGAC 59 3592620 3592638 AGCGGATAAAGCCGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tob2 ENSRNOG00000050500 ENSRNOT00000071998 1 1 1 255 7 123088213 123088231 AATCACATGAGCTCGGTCC 60 123081541 123081559 ACTTTGATCTCCAGCTGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gk2 ENSRNOG00000029397 ENSRNOT00000044244 2 1 1 60 14 13751619 13751638 CTATACAATGCCGTGGTGTG 59 13751657 13751679 TATTGAGACTCTCCACAGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563780 ENSRNOG00000048565 ENSRNOT00000074218 2 1 1 83 15 29349564 29349756 GATTTGCTGGGTGAGAGGA 59 29349499 29349518 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 MGC114427 ENSRNOG00000023016 ENSRNOT00000037881 2 1 1 99 X 147494728 147495263 ACATCAGTGTGAAGGTTTGTG 59 147495324 147495342 GCTGTTGTCAGTAGGTTCC 58 NA InUTR Rattus norvegicus 81 Olr789 ENSRNOG00000048999 ENSRNOT00000071479 2 1 1 60 3 103344588 103344607 CACATCTCTGTTGTGGTCCT 60 103344547 103344565 GCGAAGGCCATGTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5c2 ENSRNOG00000020179 ENSRNOT00000027351 2 1 1 80 1 266668766 266669718 TCCCAGATATACCAGTTGTGAC 59 266668707 266668729 CTTACATCCTGGAACATACTCCT 60 NA Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 3 1 1 60 1 67917881 67917900 AATCAGCCCTAATCACTCCA 59 67917920 67917941 ACCAATGTACTTGATGACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgmn ENSRNOG00000007089 ENSRNOT00000010101 2 1 1 80 6 126292051 126292845 AAAGTCTTGAAGAGTGGGC 58 126291989 126292007 AGGAAACACCAGGATTCCA 59 NA Rattus norvegicus 81 Plau ENSRNOG00000010516 ENSRNOT00000014273 3 1 1 80 15 3647114 3647632 CATAATGACATAGCCTTGCTG 57 3647054 3647072 GCAGATGGTCTGTATGGTC 58 NA Rattus norvegicus 81 Hacd1 ENSRNOG00000043192 ENSRNOT00000063911 2 1 1 80 17 81187413 81187602 TTTGCTTGAGGTAGTCCAC 57 81187275 81187294 ATTCGTGAACTCACTTGGAC 58 NA Rattus norvegicus 81 Olfml1 ENSRNOG00000056562 ENSRNOT00000081351 1 1 1 89 1 171797728 171797746 GAGGAGAAGACATCAGCTG 57 171797799 171815887 CATGTTGTCACAGCTTGTG 58 NA Rattus norvegicus 81 Mre11a ENSRNOG00000009506 ENSRNOT00000012940 2 1 1 80 8 13319115 13319134 GCTCTTCTATGTGTCTCAGC 58 13319176 13321322 AGGCCTACATGTTTCTTCAC 58 NA Rattus norvegicus 81 AABR07017735.1 ENSRNOG00000049065 ENSRNOT00000071797 1 1 1 80 15 30430017 30430209 AGATTTGCTGGGTGAGAGG 59 30430253 30430271 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 AABR07017735.1 ENSRNOG00000049065 ENSRNOT00000071797 2 1 1 83 15 30430018 30430210 GATTTGCTGGGTGAGAGGA 59 30430256 30430275 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 1 2 2 80 1 220929920 220931398 CAAGATGAAGGTGACCTTGG 59 220929859 220929878 TGGTAGGTGAAGGACTTCTG 59 NA Rattus norvegicus 81 Rilp ENSRNOG00000003784 ENSRNOT00000005039 2 1 1 94 10 63661538 63661918 CCAGAATTTCTTTGGCTTATGG 58 63661973 63661991 CTTCTCCTTCCTGTGTCCT 58 NA Rattus norvegicus 81 Atf1 ENSRNOG00000061088 ENSRNOT00000087298 3 1 1 80 7 141889616 141905472 AGTCCATCAGGTGTCATCG 59 141905516 141905534 TGAGCTTTCTGTGAGGAGC 60 NA Rattus norvegicus 81 Rpl27-l1 ENSRNOG00000031517 ENSRNOT00000047308 3 1 1 60 X 68955201 68955219 CCACAAGGTACTCTGTGGA 59 68955159 68955178 CTGAACACATCCTTGTTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304770 ENSRNOG00000042918 ENSRNOT00000066856 1 1 1 81 20 45017629 45020641 GGATACAGGTGCAAATGTCC 59 45017567 45017585 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Wt1 ENSRNOG00000013074 ENSRNOT00000067940 2 1 1 83 3 95176387 95176405 ACTTCAAGGACTGCGAGAG 59 95176451 95177271 GGAATGGTTTCACACCTGTG 60 NA Rattus norvegicus 81 LOC361346 ENSRNOG00000028677 ENSRNOT00000014670 1 1 1 80 18 68974562 68978062 CCCTGTTACTTTCAAATCTCCT 58 68974503 68974522 TCCTCAAGACACTTTGTCCT 59 NA Rattus norvegicus 81 Zfp709l1 ENSRNOG00000048910 ENSRNOT00000047433 2 1 1 87 7 10430923 10430941 GCTTTGCTGGATCCTTTCC 59 10420357 10430878 CCAATTTGTATCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000058563 ENSRNOT00000080489 1 1 1 80 12 13391086 13392484 CCCAGGACTATCAGAACCA 58 13392528 13392546 GATGACAAGTCCCTCTTCC 57 NA Rattus norvegicus 81 Tekt4 ENSRNOG00000018792 ENSRNOT00000025434 3 1 1 80 10 14832758 14832776 GCCCAAACTCGACTTTACC 59 14832820 14833555 GCTCATCAACCTGAACTGG 59 NA Rattus norvegicus 81 Manba ENSRNOG00000052247 ENSRNOT00000087371 3 1 1 80 2 240695787 240695807 AAGACGTTAGAATCGAAGCCT 60 240695843 240700008 CCTGAGAAGTGTTATCATACAATGG 60 NA Rattus norvegicus 81 Tubd1 ENSRNOG00000053309 ENSRNOT00000081012 2 1 1 80 10 73872415 73872435 AGCTACAAGATCAGTACTCCA 58 73872477 73874989 TCTGAACAATAACCTCGCC 58 NA Rattus norvegicus 81 Nxf2 ENSRNOG00000011729 ENSRNOT00000015806 2 1 1 80 X 105785084 105785212 CAATATCCCTGAACTGTTGTCC 59 105785025 105785046 TTCTCTGTCATGTCAGATAGCC 60 NA Rattus norvegicus 81 Snai3 ENSRNOG00000013586 ENSRNOT00000018387 3 1 1 103 19 55278730 55279906 ACCCATACAGGTGAGAAGC 59 55278645 55278663 TTCTTGGTACCAGCGTGAG 60 NA Rattus norvegicus 81 Dlg2 ENSRNOG00000022635 ENSRNOT00000055401 1 1 1 80 1 156929544 156929562 GTATCCTTCATTCTGGCCG 58 156929604 156969334 ACCATTCACCGATAAGATCTG 58 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000049438 ENSRNOT00000072853 1 1 1 60 3 75167844 75167865 ACTTCTTCTGTGACATACCTCC 60 75167805 75167826 TCATTCACAAAGATGTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549,ENSRNOT00000014733 3 2 2 80 4 147766455 147766475 CTACGACCTTGCATTTAAACC 58 147766516 147768130 TCAGAGGTGTCATAAACCAG 57 NA Rattus norvegicus 81 Gja1 ENSRNOG00000000805 ENSRNOT00000001054 2 1 1 90 20 37876807 37876827 CGGCTTCACTTTCATTAAGTG 58 37886192 37886210 AGTAGGCTTGGACCTTGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gja1 ENSRNOG00000000805 ENSRNOT00000001054 3 1 1 102 20 37876784 37876802 GAGTTCCACCAACTTTGGC 59 37886181 37886199 ACCTTGTCCAGAAGCTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC691909 ENSRNOG00000053015 ENSRNOT00000078779 1 1 1 80 1 199033816 199033835 CAGACTATGTGGTCAACACC 58 199033662 199033773 ATAGGTCGAGACGAACCTG 59 NA Rattus norvegicus 81 LOC691909 ENSRNOG00000053015 ENSRNOT00000078779 2 1 1 81 1 199033815 199033835 CAGACTATGTGGTCAACACCT 60 199033661 199033773 GATAGGTCGAGACGAACCTG 60 NA Rattus norvegicus 81 RGD1309651 ENSRNOG00000017646 ENSRNOT00000023721 2 1 1 170 19 54187327 54204687 GTCTGAAAGGCTTTAAGATGTG 58 54184987 54187196 CCAACTCATCCATCCAGAC 58 NA Rattus norvegicus 81 Olr43 ENSRNOG00000018514 ENSRNOT00000024971 2 1 1 60 1 167720263 167720281 ATGCCTTCACCTATGTGGA 58 167720305 167720323 GCAATGAAGCGATCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912228 ENSRNOG00000046449 ENSRNOT00000074351 1 1 1 84 4 79579183 79579201 CAAGAGATCCAGCCCTGAG 60 79579248 79581020 GTCTTCAAGCCTTGTTCTGG 59 NA Rattus norvegicus 81 Rpl7a ENSRNOG00000049097 ENSRNOT00000006754 3 1 1 89 3 4869034 4869052 ATCATCAAGGGAAAGGCCA 59 4869105 4869336 CTTGTCTTCCGAGTTCACC 58 NA Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 1 1 1 80 14 23604730 23604750 CTAAAGATCACTGCTCTACCC 58 23599046 23604689 ATAGTGTTCGTACTCCTGGT 58 NA Rattus norvegicus 81 Bahcc1 ENSRNOG00000043102 ENSRNOT00000066736 2 1 1 80 10 109479465 109479483 GTGGTGAAGGTCAAATGGT 58 109479525 109479696 GTATAGTGCATTCTTCCCGTC 59 NA Rattus norvegicus 81 Nptx2 ENSRNOG00000001006 ENSRNOT00000001331 1 1 1 98 12 12023142 12023160 CTCCACAATGAGACCTCGG 60 12017931 12023080 GAATGCACTGTTGCCTCTC 59 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000081678 1 1 2 80 2 184242658 184242677 GAAGAGTGCGTACATCAGAC 59 184238603 184242615 CCTTTCAGCACCTTAGGAG 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704,ENSRNOT00000041514 2 2 5 80 14 22193669 22211524 TACAGTAAAGCCTTAGGAAGACC 60 22211562 22211582 CCAATATGTTCGCATTAGCCA 59 NA Rattus norvegicus 81 Plagl1 ENSRNOG00000025587 ENSRNOT00000030329 1 1 1 83 1 7252688 7254751 AAGCTGATGAGACACATGG 58 7254798 7254816 ATCCTTCCGGTTGAAAGTC 58 NA Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 3 1 1 80 15 3769590 3769712 TTATGAGGAAGATGCTGACGA 59 3769530 3769548 TCATCCTCCTCTCCAACTG 58 NA Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 1 1 1 60 10 60542258 60542279 AATCATTCTCCTGGTTCAACTG 59 60542219 60542239 GCTAAGAAACAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 3 1 1 60 10 60542175 60542193 TTTCCTCCGTCACAATACC 57 60542133 60542153 GATATAGATGGCACTTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrnad1 ENSRNOG00000011645 ENSRNOT00000015793 2 1 1 85 2 187296998 187297016 CTAGTAGCGAGAGCTCAGC 60 187296314 187296949 CTTTGCACCATCTTTGGGT 59 NA Rattus norvegicus 81 Cdc42bpg ENSRNOG00000027456 ENSRNOT00000038016 2 1 1 80 1 221676994 221677015 TGTTCTAGTGAAGGGAGATAGC 59 221677055 221677473 ATCACCAGGTACAGGTACTC 58 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793,ENSRNOT00000083088 1 7 8 113 6 64854378 64861601 CGTTTGGAGAATATAGTGATGC 57 64861675 64861693 CATAGTCAACCAGGCTGTC 58 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324,ENSRNOT00000042677 1 3 3 80 12 20955543 20956032 AGTGGAGCAACAGATTCCT 59 20955481 20955499 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 LOC103689929 ENSRNOG00000058333 ENSRNOT00000086076 2 1 1 80 X 123856902 123856920 AATCACTTCATCGGTGCAG 58 123852111 123853448 AAACCAATTCTGAACTCTGGC 59 NA Rattus norvegicus 81 Clca1 ENSRNOG00000060831 ENSRNOT00000084996 3 1 1 83 2 250923591 250923609 ATGGCTATGAAGGCATCGT 59 250918696 250923545 TCACCATGTCCTTTATCCGT 59 NA Rattus norvegicus 81 Nell1 ENSRNOG00000015675 ENSRNOT00000056030 2 1 1 80 1 106209316 106209336 GATCAAAGTGGACAGAAGCTC 59 106209378 106211369 CTCTCCTTCCAGACATCGG 59 NA Rattus norvegicus 81 Olr325 ENSRNOG00000021071 ENSRNOT00000028605 1 1 1 60 1 228546008 228546026 ATCACACCCATGCTAAACC 58 228545966 228545985 TGGCTGACTTCATTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uck1 ENSRNOG00000011467 ENSRNOT00000015792 1 1 1 80 3 11276057 11276222 GACCCACTCAAGGTTACCA 59 11275995 11276015 GTGTAGAATACCAAGATGCCC 59 NA Rattus norvegicus 81 RGD1560559 ENSRNOG00000025031 ENSRNOT00000031780 2 1 1 60 11 83676682 83676703 ATGATAGACTGGAAGGATCCTC 59 83676643 83676661 TTACATGCTGCCAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn5 ENSRNOG00000007038 ENSRNOT00000009418 2 1 1 80 8 7951230 7952987 TGTCAAAGAACCCACAAGGA 60 7951169 7951189 TTGCAGTTAAGGACAATGCTC 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000066130 2 1 3 106 X 123989722 123990559 AAAGGTACCTCCTTTGCCA 59 123988554 123988572 ATCTGTCATGGAGATGGCG 60 NA Rattus norvegicus 81 LOC100360619 ENSRNOG00000053623 ENSRNOT00000087392 1 1 1 65 19 38643186 38643204 GTCCTCCGAAGAGACTGTG 60 38643319 38643337 GTTGATGGCGGTGAAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858,ENSRNOT00000079812 2 2 2 80 15 4388363 4388384 AGGCGGACTGTATAATCTTCTC 60 4382965 4388326 GAAATCCCTCTTCCATATCTGTG 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858,ENSRNOT00000079812 3 2 2 80 15 4369928 4369946 GGCCTCTTGATTCATGGGA 60 4367496 4369888 GAGCTTGTCATCAAGATCTAGGA 60 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 3 2 2 80 10 16710033 16710054 GTTAGTGAGCTTCCCTTAACAG 59 16707641 16709992 CTTCAGCCTACAAGCTCTG 58 NA Rattus norvegicus 81 Ambp ENSRNOG00000006889 ENSRNOT00000009248 1 1 1 80 5 78977191 78978217 TCAAGAAAGAAGACTCCTGC 58 78977130 78977151 CGCCATTGTAGTAATACTTCTG 57 NA Rattus norvegicus 81 Pex2 ENSRNOG00000008748 ENSRNOT00000011579 2 1 1 81 2 98265918 98267930 AGGATCCAAGGAAAGACAGC 60 98267974 98267992 ATCCTCAGCACTCTGTTGG 59 NA InUTR Rattus norvegicus 81 RGD1559962 ENSRNOG00000026462 ENSRNOT00000036049 3 1 1 60 1 20417586 20417604 AAGATGTCCTCGTATGCCT 58 20417544 20417565 GATGCTTATTCTTGTGCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll1 ENSRNOG00000010141 ENSRNOT00000055978 1 1 1 80 7 124357790 124359257 ATACCTCTATCTGGACTTCGT 58 124357730 124357749 CTCTTCCGGAATTCTTCCAC 58 NA Rattus norvegicus 81 Sox8 ENSRNOG00000018841 ENSRNOT00000025494 1 1 1 63 10 14936590 14936608 TCCATAACGCAGAGCTCAG 60 14935514 14935532 TTCTCGCTTTCACTCAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Slc36a4 ENSRNOG00000011455 ENSRNOT00000015383 3 1 1 80 8 14262995 14263015 TACATGTGTTTCCGAGATGAG 58 14263054 14266836 TTTCACTGACTGATACAACCAC 59 NA Rattus norvegicus 81 Mef2d ENSRNOG00000031778 ENSRNOT00000051394 1 1 1 85 2 187527813 187528773 GCTATGGGTCATCTGTTCC 58 187528822 187528840 ATTGCTGAACTGCATGGAG 59 NA Rattus norvegicus 81 Rnf43 ENSRNOG00000007606 ENSRNOT00000010296 2 1 1 85 10 75022113 75022132 AGAAGCTGATGGAGTTTGTG 58 75022180 75022732 ATCGTAATTTGCCCAAGCC 59 NA Rattus norvegicus 81 Dcaf12l1 ENSRNOG00000023458 ENSRNOT00000038653 3 1 1 127 X 131342605 131342623 ATGGCTACTTCCACCTGTG 59 131342307 131342514 GGAACCCACAGCATAGAGG 60 NA Rattus norvegicus 81 Dars ENSRNOG00000003743 ENSRNOT00000005127 3 1 1 80 13 45076757 45077838 CCCAAGAAATCCTAAGCAGTC 59 45076697 45076717 TGTATTCTTTGTGCTCCAGAC 58 NA Rattus norvegicus 81 Tstd3 ENSRNOG00000028185 ENSRNOT00000030559 1 1 1 80 5 35894809 35894922 AGTCAACATACCATTGGATGAG 58 35894750 35894771 TTCTCTTCACCATACTTCTCCT 58 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000054812,ENSRNOT00000065376,ENSRNOT00000082482 1 4 4 81 1 226778035 226778053 ACTACAGCAATGCTTCCAG 58 226776303 226777990 CTTGGGCTGGAAATCAGAG 58 NA Rattus norvegicus 81 Olr421 ENSRNOG00000032321 ENSRNOT00000051973 1 1 1 60 3 21027835 21027856 TCCTTACCATGTATCTGATGTC 57 21027796 21027814 GAACAAGCGACAAGTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r72 ENSRNOG00000056406 ENSRNOT00000086909 3 1 1 60 4 87700443 87700461 GTGGTCATGTACTGGTTGG 58 87700481 87700503 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem150b ENSRNOG00000028273 ENSRNOT00000032439 3 1 1 80 1 72693658 72693676 TAACTGTGGCTCTTACGCT 59 72693719 72694144 CAGATCCAAACAGCTAGAGC 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368,ENSRNOT00000026587 1 2 2 80 1 199394999 199395340 AGTTGTAGTCCTGGTGGTC 59 199394640 199394659 TCTTCGAATTCTCCTTGGGT 59 NA Rattus norvegicus 81 Rad9b ENSRNOG00000021480 ENSRNOT00000048454 1 1 1 80 12 39714962 39718315 AATCACTGGATTTAACCAGCTC 59 39718353 39718374 CAAGTCCAACCTGAAAGAAGTC 60 NA Rattus norvegicus 81 AABR07040565.1 ENSRNOG00000037736 ENSRNOT00000050903 3 1 1 60 X 104336831 104336849 CTTCAACAGCAACTCCCAC 59 104336789 104336807 GTCATTGAGAGCAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr720 ENSRNOG00000006637 ENSRNOT00000008676 1 1 1 60 3 78716706 78716725 TTAATCAGGAAGGGAGGTGG 59 78716665 78716683 ACAACTACAGTGATGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gigyf1 ENSRNOG00000001410 ENSRNOT00000001912 2 1 1 80 12 22238393 22238415 GGGACATACCAATTAACTCTTCG 59 22238254 22238356 CTCTGCGTTCTTGAAATTTGTG 59 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 2 2 2 80 4 34602701 34610182 GATCGTGATAAAGACAGTGGG 59 34610222 34610242 GAACATGTAGCTGTTGTTTGG 58 NA Rattus norvegicus 81 LOC500702 ENSRNOG00000030420 ENSRNOT00000046625 3 1 1 100 6 116235643 116235667 GATGGTATTGTCTAGCATCTATAGG 58 116234214 116235585 CTGCATCATCAGTCTCAGC 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855,ENSRNOT00000056483 1 2 3 80 8 111744888 111746493 GAACACAGATGGAAAGAACCC 59 111744828 111744846 GTACCATCAAGGCAGAGGA 59 NA Rattus norvegicus 81 Mpc1 ENSRNOG00000012415 ENSRNOT00000017282 1 1 1 80 1 53027715 53038111 GGGACTATCTCATGAGTACTCAC 60 53027657 53027678 TCTTCATGTCATTGATAGCAGC 59 NA Rattus norvegicus 81 Dgcr8 ENSRNOG00000001886 ENSRNOT00000002581 3 1 1 80 11 86864191 86867612 GAAGAATAAAGCTGCCCGAG 59 86867653 86867673 TCTTTAGGCTTCTCCTCAGAG 59 NA Rattus norvegicus 81 Serpina10 ENSRNOG00000050761 ENSRNOT00000073709 1 1 1 80 6 127501513 127501531 AGGATCTTCTCCACCTCAG 58 127500354 127501469 CTGTTGTACGACCTTGGAC 58 NA Rattus norvegicus 81 Rpf2 ENSRNOG00000000587 ENSRNOT00000000717 3 1 1 80 20 45332860 45332878 GAAGTCGGACTGTTCTCTG 58 45331679 45332818 TCATACATACGACCTATCACG 57 NA Rattus norvegicus 81 Sft2d2 ENSRNOG00000003038 ENSRNOT00000004065 2 1 1 81 13 83451850 83454619 TTGTTTGCTGTTGTGGAGTC 59 83451788 83451806 GGATCCCTAGAGCAAAGCA 59 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 1 1 1 60 3 21363372 21363391 ACCCTCTTCCTGATATTCCT 57 21363414 21363432 CCATTCCCACATTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 2 2 3 94 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956102 37957285 GAGAAAGCAAGACCCAGGA 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 3 2 3 95 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956101 37957284 AGAGAAAGCAAGACCCAGG 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000085560 1 1 3 60 1 37957287 37957308 GGAGAATTATAGCAACCTTGTG 57 37918596 37918615 GCAGGATGAAGATGGAAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Iqgap3 ENSRNOG00000027894 ENSRNOT00000038589 1 1 1 80 2 187456543 187456564 AGAGACCACAGACATCTATGAC 59 187456604 187457431 CGGAAGAGGAAGAGACTGAG 59 NA Rattus norvegicus 81 Srsf9 ENSRNOG00000001163 ENSRNOT00000001539 3 1 1 84 12 47040636 47042131 TTCTTGTTTCAGGGCTTCCT 60 47040571 47040589 TCTGCGTAACAGACATCCC 60 NA Rattus norvegicus 81 Txlna ENSRNOG00000048242 ENSRNOT00000072165 2 1 1 80 5 147835708 147835965 AAGGAGTTTCTCTTGAAAGAGG 58 147835649 147835669 CTGCTTTAAGTGAGTCTCCTG 59 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 1 1 1 60 13 71305989 71306007 GTTCAGGTCTCGTCAAAGG 58 71306031 71306049 GGAACACCACCAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Teddm1 ENSRNOG00000048614 ENSRNOT00000071815 2 1 1 60 13 71323364 71323384 AGCCTTCATCCTGTTTAGACC 60 71323404 71323424 GTCACTGATGTCATCATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall3 ENSRNOG00000026116 ENSRNOT00000034896 1 1 1 115 18 77575095 77576493 ATCTCAAGGTACACATGGGC 60 77574999 77575017 AGAGAACTTGAGAGCGTCG 60 NA Rattus norvegicus 81 Dnajb12 ENSRNOG00000030408 ENSRNOT00000044805 1 1 1 80 20 29460918 29460937 GACACAGACATGTACCACAG 58 29460978 29462010 CTCCAGGGATTTCATAGTCTC 57 NA Rattus norvegicus 81 LOC103690015 ENSRNOG00000033146 ENSRNOT00000049028 2 1 1 61 1 77541598 77541616 CAAGATCTACGGAGGACGG 59 77541641 77541659 TAGAGCCTCTGCTGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prmt8 ENSRNOG00000053804 ENSRNOT00000086772 1 1 1 80 4 160293653 160293671 GATGTTGGGAGTGGTACAG 58 160290540 160293611 GGAACATTCAATCCCAAACAC 58 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298,ENSRNOT00000077347 1 2 2 80 10 10816594 10816615 GATTCACTCCTTTGATGGAAGC 60 10816653 10818546 CCACTTTGACTCCATGATTCAG 59 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 2 2 3 89 13 82562096 82563162 GTTTCAACCTTGCTGGGTG 60 82563214 82563233 CAGGAATAACGTCACCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076186 3 1 3 61 13 82557540 82557561 GCTAAATGAGATGTTCTTTGGG 58 82559162 82559182 GGTAAGAGTATGTCCACACTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000070848 2 1 10 81 15 32809121 32852780 GACTGAAGGTTATACCACATGTC 59 32852819 32852839 AGGGTGATGTTATCAGACTGG 59 NA Rattus norvegicus 81 Csgalnact2 ENSRNOG00000014713 ENSRNOT00000019778 2 1 1 80 4 150167232 150167252 GTGTTCAGTCTTTACAACCCT 58 150162117 150167190 TTTATGAACCAGCTGCTGC 59 NA Rattus norvegicus 81 Xpc ENSRNOG00000008274 ENSRNOT00000011490 3 1 1 80 4 123156522 123156543 ACTAAGTCCAAGAATCTCAAGG 58 123154665 123156481 GTTACTCAATGAGTCCCGG 58 NA Rattus norvegicus 81 Uba6 ENSRNOG00000021931 ENSRNOT00000037509 1 1 1 80 14 23533869 23533888 ATCTTGAAGCAGCAGATACC 58 23533929 23535586 CATCGTATCTATCTCCTCGTG 57 NA Rattus norvegicus 81 Nmrk2 ENSRNOG00000042897 ENSRNOT00000066348 1 1 1 80 7 11385269 11385288 GTGGACTTGTACAACCAACG 60 11385328 11385644 CATGTAAGTACGGCTTCTTCTC 59 NA Rattus norvegicus 81 Tnfsf10 ENSRNOG00000013269 ENSRNOT00000017758 2 1 1 80 2 113023082 113024116 TAATTCCAATCTCCAAGGATGG 58 113024157 113024175 GAAATGAATGCCCTCTCCG 59 NA Rattus norvegicus 81 Bin2 ENSRNOG00000031930 ENSRNOT00000048262 2 1 1 80 7 142282353 142284563 TTATAACAGTCGTATTGGCTGC 59 142282294 142282314 CTCATCTCCCTGTAGAAGACG 60 NA Rattus norvegicus 81 Bmp8a ENSRNOG00000030155 ENSRNOT00000045922 1 1 1 82 5 141019931 141033085 CTTCGTCAACATGGTGGAG 59 141019867 141019887 TCTGGGTTAAGTCAAAGTGGA 59 NA Rattus norvegicus 81 Olr636 ENSRNOG00000049429 ENSRNOT00000040581 1 1 1 60 3 77290004 77290024 TGGACATTTGCTATACCTCCT 59 77290045 77290064 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934,ENSRNOT00000064686 2 2 2 60 18 55871388 55871410 GAAATACGTCATAGAGTCGTCAG 59 55871350 55871368 CATAGTAGGTGAAGGGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd42 ENSRNOG00000009664 ENSRNOT00000068402 3 1 1 80 1 157422352 157425561 GAGTCTAAGAAGACCATCACAG 58 157422293 157422314 CAGTTGACACTCTAACTTCTCC 59 NA Rattus norvegicus 81 Olr866 ENSRNOG00000050435 ENSRNOT00000046941 2 1 1 60 5 137845831 137845850 ACCTCATTGAGATTGTGGAC 58 137845790 137845809 AGGGAGATTGGAGTAACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znhit2 ENSRNOG00000021794 ENSRNOT00000028482 1 1 1 60 1 221425073 221425092 ACTCTCGCCCTATATCATGG 59 221425114 221425133 GAGTAGCACAGAAGTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.3 ENSRNOG00000052843 ENSRNOT00000040046 3 1 1 79 15 29852633 29852651 TGTTTCACTGGTGGTCCTG 60 29852393 29852411 TGAGTGATTCTGGGCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Tas2r118 ENSRNOG00000021799 ENSRNOT00000034936 1 1 1 60 4 51002723 51002741 TTCTCTGGTTGCTATTGGG 57 51002681 51002701 ACAACAGAAGGGATGATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 2 2 2 80 3 3845413 3845433 CAAGTTTGACATTGGGAAGGA 59 3844832 3845373 TTGTATAGGACTCGGTCTGTG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 3 1 1 80 14 23456233 23456252 AGCTACTCAGAAGTTCCCAC 59 23456293 23457309 TTAGGACTGTCTCCATCTGAC 59 NA Rattus norvegicus 81 Mrpl52 ENSRNOG00000039297 ENSRNOT00000060193 2 1 1 91 15 33071215 33072033 GAGAAGCTTGCAAGACGAG 59 33072088 33072106 TCTTCCTGCAGTTTCTGCT 59 NA Rattus norvegicus 81 Trim42 ENSRNOG00000048975 ENSRNOT00000071936 1 1 1 80 8 105220236 105222148 CAAGTTCAAAGCAGTCCGA 58 105220174 105220194 TTGTCAGCTTTGAAGCTACTC 59 NA Rattus norvegicus 81 Trim42 ENSRNOG00000048975 ENSRNOT00000071936 2 1 1 80 8 105220230 105222144 TTCAAAGCAGTCCGATATGAG 58 105220170 105220189 TTCCTTGTCAGCTTTGAAGC 59 NA Rattus norvegicus 81 Cyp2ab1 ENSRNOG00000042367 ENSRNOT00000066953 1 1 1 80 11 84509156 84509509 AAATCACCAAGGCCATGGA 60 84509550 84509571 CCAGAAATAGGTCAATCACCAC 59 NA Rattus norvegicus 81 Cdh16 ENSRNOG00000012222 ENSRNOT00000016419 1 1 1 80 19 569520 569538 ACAGAAAGCCTGCATACAG 58 569580 570253 TAAGGGTAGTGGTAGCTTGAG 59 NA Rattus norvegicus 81 Cdh1 ENSRNOG00000020151 ENSRNOT00000027346 3 1 1 80 19 38769457 38769475 CGAGGTCTACACCTTCCTG 59 38769516 38817353 GTGCATCCTTCAAATTTCACTC 59 NA Rattus norvegicus 81 Rab14 ENSRNOG00000018901 ENSRNOT00000025649 2 1 1 80 3 14382951 14382969 AGGTTCAGAGCTGTTACAC 57 14379893 14382909 TGTACTTCTTCTGGTGATGTC 58 NA Rattus norvegicus 81 LOC102555377 ENSRNOG00000026569 ENSRNOT00000034746 3 1 1 90 1 62171413 62171431 ACCTTGACTGTGCTCAGAG 59 62171482 62172734 TGACATAAGTGATGACTCTCCA 59 NA Rattus norvegicus 81 Pcdhb17 ENSRNOG00000039471 ENSRNOT00000040998 2 1 1 60 18 30562982 30563003 TTAGACAGTGGAGACTATGGGA 60 30563021 30563042 TAATATCTTCTGAGGGTTGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017733.1 ENSRNOG00000049583 ENSRNOT00000071781 1 1 1 84 15 30413527 30414816 CTCTTCTTCACAGGTGTGAG 58 30414863 30414881 TAAAGGCACTGTCTCCCTC 59 NA Rattus norvegicus 81 Crtc2 ENSRNOG00000056337 ENSRNOT00000092144 1 1 1 80 2 189621147 189621333 CTTAACAGGACAAGCTCTGAC 59 189621375 189621393 TGTAGGGCCTGGATAAGTG 59 NA Rattus norvegicus 81 Twistnb ENSRNOG00000010750 ENSRNOT00000014373 3 1 1 80 6 52765106 52765127 GATGTGTTTCGCTTAGACTCAG 60 52765166 52765735 CTTATGCTGCAAACTTGTGGT 60 NA Rattus norvegicus 81 Nt5m ENSRNOG00000003332 ENSRNOT00000004448 3 1 1 81 10 46228860 46241103 GTCCCTATGAGAAGTATGCCT 59 46241145 46241164 GTCTTGTCTCTGGTCAACAC 59 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786,ENSRNOT00000085211,ENSRNOT00000057395 3 3 3 80 13 103255831 103255849 GAATGTTCACCAGTGCTGC 60 103255154 103255790 GCATCTTTATAACCACATCGGT 59 NA Rattus norvegicus 81 Tceal7 ENSRNOG00000037645 ENSRNOT00000046091 3 1 1 168 X 106775021 106775867 GAAGAGAAGGAATCTGTGTTCAC 60 106776284 106776303 CCATAGGGATGTTCCTCCTC 59 NA InUTR Rattus norvegicus 81 LOC684828 ENSRNOG00000048264 ENSRNOT00000075069 2 1 1 60 17 43798050 43798070 CCTTCAAACTCAACAAGAAGG 57 43798010 43798029 CCTACTTTCTTTGCTTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp9 ENSRNOG00000061883 ENSRNOT00000087980 3 1 1 81 8 77560156 77563046 TTGAGGTCTTCACAGTTGGA 59 77560094 77560113 ATAAGACCTCCCAGGAAAGC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000080961,ENSRNOT00000088679 3 3 5 80 9 81661226 81661593 CTTCCTGGATAACTATGGTTTGC 60 81661633 81661651 TAACCGAAGGTCAAAGCCA 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000090225 2 1 12 60 20 3364215 3364234 TAACACATGCTTCATCTCCC 58 3364255 3364275 CTGTAACAAGACCTGATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000076379 2 2 4 114 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208573777 208573795 TGAAAGACCCTTGTTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Ndufb11 ENSRNOG00000008329 ENSRNOT00000011183 1 1 1 80 X 1787746 1789006 AACCTCTACGCGAAGAACC 60 1789049 1789068 GAAGACAGCTCGCATATTCC 59 NA Rattus norvegicus 81 Gjb5 ENSRNOG00000059897 ENSRNOT00000081919 1 1 1 60 5 145423120 145423138 GGGTCAACAAGTACTCCAC 58 145423078 145423096 CGGAAGACAAAGACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912017 ENSRNOG00000045677 ENSRNOT00000050551 2 1 1 80 1 213680878 213681926 GTCTGAGTATTCTGACCTTGTC 58 213681967 213681985 GAGCTACCTTCAGAGCCTC 59 NA Rattus norvegicus 81 Tcl1a ENSRNOG00000025233 ENSRNOT00000029346 3 1 1 110 6 128890699 128894593 GATAGTCATCAAGAGTAACGGA 57 128890610 128890629 ATTAAAGGCAGCTCATACGG 58 NA Rattus norvegicus 81 Asz1 ENSRNOG00000060343 ENSRNOT00000091311 2 1 1 80 4 45363194 45371541 AGTTGGAAATTAGTGGCGA 57 45363132 45363151 GCACAGCTGTGATTAAATGG 58 NA Rattus norvegicus 81 Slc9a3r1 ENSRNOG00000003232 ENSRNOT00000004351 1 1 1 82 10 103729312 103729330 CTGGTAGAGCCAGCTTCAG 60 103729376 103729612 TGGGCATTTAGCTCCTCAC 60 NA Rattus norvegicus 81 Nkain1 ENSRNOG00000011445 ENSRNOT00000056229 1 1 1 80 5 148661193 148662658 CGGTATCTCATCCTGTATGC 58 148662701 148662719 AACCTCCAGGTAGAAGCAG 59 NA Rattus norvegicus 81 Cables1 ENSRNOG00000012795 ENSRNOT00000017187 1 1 1 83 18 3400431 3415772 TTCGTACATGACCACAGTG 58 3415818 3415837 GGAAACTTCTCCTTGAAGGT 58 NA Rattus norvegicus 81 Vom1r78 ENSRNOG00000057171 ENSRNOT00000080536 2 1 1 60 4 87943430 87943448 CACCTACCTCCTGAGTGTG 59 87943472 87943490 TGCCAACAACGAAGTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim69 ENSRNOG00000017157 ENSRNOT00000023209 1 1 1 80 3 114117667 114118599 GACTTCCTCACAGACATCAC 58 114118726 114118744 GGAGATAAGCTGTCTGGGT 59 NA Rattus norvegicus 81 Trim69 ENSRNOG00000017157 ENSRNOT00000023209 3 1 1 80 3 114118758 114118776 TAGGTCGCTTCAAAGGTCC 59 114118820 114122708 TTAGTTGAGATGGGCCTGG 59 NA Rattus norvegicus 81 Ppp2r1a ENSRNOG00000011282 ENSRNOT00000015019 1 1 1 80 1 60723071 60724684 TGCCCTTTCTTACAGATACCA 59 60724726 60724744 AAGTGGTGAAGGTTCCCAG 60 NA Rattus norvegicus 81 Eif3l ENSRNOG00000011020 ENSRNOT00000014817 2 1 1 88 7 120328688 120330515 CTACATTGATAAGGACATGATCCAC 60 120330561 120330579 CAAACTTGTGGATCTGCCG 60 NA Rattus norvegicus 81 LOC100365347 ENSRNOG00000043089 ENSRNOT00000065401 2 1 1 92 15 31167874 31167892 TGTTTCACTGGTGGTCCTG 60 31168496 31168514 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Klk7 ENSRNOG00000018664 ENSRNOT00000025299 2 1 1 83 1 99751849 99751870 AGGTGTATAAGGATCTTCTGGG 59 99751913 99753720 CTGAGTCACCATTGCATGTG 60 NA Rattus norvegicus 81 Hist1h1a ENSRNOG00000017175 ENSRNOT00000023054 2 1 1 60 17 43614298 43614317 AGACTTCTTCTAAGAGCCCA 58 43614257 43614275 CTCTTGGCTACCTTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a14 ENSRNOG00000005687 ENSRNOT00000007967 3 1 1 80 X 120631194 120631212 ACTTCACCTGCTTGAATGG 58 120631256 120633593 GAAGCGTCACTTTATCCCA 58 NA Rattus norvegicus 81 Olr1297 ENSRNOG00000046553 ENSRNOT00000075687 1 1 1 60 15 35505243 35505264 TGTATCCATGTCCTTTCAAGTC 58 35505285 35505303 TAAGCCAACACCATACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000063970 2 1 2 148 6 127333677 127333696 GTGTCAGCCATTGCTAATGG 60 127334212 127334320 ACCTCTGTTCCCATGTTGG 60 NA Rattus norvegicus 81 AABR07031158.1 ENSRNOG00000043413 ENSRNOT00000073306 3 1 1 139 18 2182272 2182290 CTTTGTGATGGAGGAGGGT 59 2181404 2182170 GATGGCGAGTTATCACAGAG 58 NA Rattus norvegicus 81 AABR07072562.1 ENSRNOG00000050653 ENSRNOT00000073029 3 1 1 60 17 69617336 69617357 CCTAAACAACAGACACCAAGAC 60 69617376 69617396 TTCTTTGGTAGAAGAACTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plaa ENSRNOG00000007753 ENSRNOT00000010621 3 1 1 80 5 113567882 113567987 ATGATGACATTACAGGGTCAC 58 113567822 113567843 TGATCCAGTTAACATTAAGCCC 59 NA Rattus norvegicus 81 Mrgprb4 ENSRNOG00000033021 ENSRNOT00000045792 3 1 1 60 1 103426271 103426289 ATAGGAATGCCTTCTCCGT 58 103426229 103426250 CAGAGGTACAAGAAATCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307391 ENSRNOG00000001439 ENSRNOT00000001957 2 1 1 80 12 23876259 23876278 AGAAGTGTGAAGAAACACCG 59 23874938 23876102 CTTGAGGCTTCTCGATCTG 58 NA Rattus norvegicus 81 Tfb1m ENSRNOG00000056223 ENSRNOT00000078768 3 1 1 80 1 44453999 44454018 GTACCTCTGCAATGTTGAGC 59 44435607 44453957 ACCACTCCTACATCAACCTC 59 NA Rattus norvegicus 81 Fbxo44 ENSRNOG00000009298 ENSRNOT00000067059 2 1 1 80 5 164968135 164968246 TGACTTCCTATTACACCTGCC 60 164968075 164968093 TGGTGTCCATCAGTTCCTC 59 NA Rattus norvegicus 81 Malt1 ENSRNOG00000017181 ENSRNOT00000068418 3 1 1 80 18 61156466 61156485 AGTATAGTCCACAAGCCACC 59 61156523 61158582 TGGATCAATATCTAGGTCAAGAGG 59 NA Rattus norvegicus 81 Grina ENSRNOG00000029941 ENSRNOT00000059599 3 1 1 81 7 117306587 117306605 CTCCCTCATTGTCCTCAGC 60 117306650 117306788 GATGGTCAGGATCGACAGG 60 NA Rattus norvegicus 81 Adora3 ENSRNOG00000015788 ENSRNOT00000021236 1 1 1 80 2 208531471 208531489 CTTCCATCATGTCCTTGCT 58 208531530 208533431 TGGTAACCGTTCTATATCTGAC 57 NA Rattus norvegicus 81 Gng5 ENSRNOG00000015936 ENSRNOT00000021358 3 1 1 83 2 252363674 252363695 AGTGTCTTCAAGTACAAATCCC 58 252363737 252367341 AGTAGTTTGAGAAACCTCGAG 58 NA InUTR Rattus norvegicus 81 Fanca ENSRNOG00000016706 ENSRNOT00000022658 1 1 1 80 19 56077585 56082405 CCACCAAAGGAGTTACAACC 59 56077524 56077546 CTAGAAAGAAGATCCTCGTTTCC 59 NA Rattus norvegicus 81 Egfl7 ENSRNOG00000019388 ENSRNOT00000026318 1 1 1 80 3 4040423 4040442 CTTTGTGCAGCGTGTATACC 60 4040485 4041467 CGGTAGATGGTTCGGTAGG 59 NA Rattus norvegicus 81 Cirh1a ENSRNOG00000020333 ENSRNOT00000027553 3 1 1 80 19 39109656 39111266 ATCTAAAGCTTCACTGCACAG 59 39111308 39111326 CCAGGTTGTTGGTATTGGG 58 NA Rattus norvegicus 81 Ceacam16 ENSRNOG00000031391 ENSRNOT00000045306 2 1 1 80 1 80780345 80780836 ACATGCAGGTCTATGAGATCC 60 80780285 80780303 GAAGGGTATCCCTACGCTC 59 NA Rattus norvegicus 81 LOC683961 ENSRNOG00000048698 ENSRNOT00000073017 2 1 1 60 5 57658259 57658279 CCGCCTGATTCTAATTGAGAG 59 57658297 57658319 CCGCTTAGTCTTATAGTATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr1 ENSRNOG00000011174 ENSRNOT00000014842 1 1 1 60 1 59766731 59766752 CCTCAACCCAATCCTTTATGTC 59 59766770 59766791 GGAGTGGATTAGTCTTTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam129b ENSRNOG00000015845 ENSRNOT00000021689 1 1 1 80 3 11956258 11957574 TGTATGAGAACAAAGTGGCCT 60 11957616 11957634 AGGTGAGAACCTTGTAGCC 59 NA Rattus norvegicus 81 Fbxl3 ENSRNOG00000059334 ENSRNOT00000089876 1 1 1 80 15 93656811 93660053 GCTTTATGGATCTACCAAAGTCTC 59 93656754 93656774 TAAGTGAGGACAGGGATTTGG 60 NA Rattus norvegicus 81 Cpne3 ENSRNOG00000006298 ENSRNOT00000008281 3 1 1 80 5 33559962 33559982 CTGATCTAACGTCAAAGTCCG 59 33559205 33559920 TGCGTTCAACCTCATACCA 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 3 2 2 84 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555762 208556046 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000072110 3 1 3 148 2 144861597 144862510 GAACTCATAGAAGTTAATGGAACCC 60 144866046 144866065 ACTGAGTCCAAATCATCCGA 59 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 2 2 2 82 8 107633349 107633368 ATAGAAACCAGTGCCAAGGA 59 107632055 107633307 GGAACCTGTTGCCTAATTACTC 59 NA Rattus norvegicus 81 Cog3 ENSRNOG00000000155 ENSRNOT00000000168 2 1 1 80 15 57779628 57779648 GACATCACAGGCTATAAACCA 58 57777838 57779586 ACTCTGTGCAATTTGCTCC 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950,ENSRNOT00000017323 1 2 2 80 4 120295797 120298569 ACTCATTGAGCTTCTGAAGTC 58 120295737 120295757 CAGTGATCCACAGACATAAGG 58 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 3 3 3 80 10 109714943 109715076 ATTACAAGTTCCGGCTAGC 58 109715120 109715138 TCACAAAGGCAAAGACCAC 59 NA Rattus norvegicus 81 Avl9 ENSRNOG00000013314 ENSRNOT00000018425 3 1 1 80 4 87034521 87035544 GCACATAACTATCAGGAAGATACTG 59 87035578 87035600 AGAGATACCATATACTGTGGCTC 59 NA Rattus norvegicus 81 Ppat ENSRNOG00000002128 ENSRNOT00000002905 1 1 1 80 14 33606191 33606209 TCAGAGACTGAAGGATGGG 58 33606250 33607866 CTTCACTTCATGGCAATATCTC 57 NA Rattus norvegicus 81 AABR07051400.1 ENSRNOG00000047244 ENSRNOT00000072628 3 1 1 80 3 9233572 9233593 CATGATGTCCAGTGAATATGGC 60 9231592 9233532 CGTTTCAGTGGTTTAGCCTG 60 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 3 3 3 80 14 34733701 34736974 TGTCTATGTTCAAGATCACAGG 58 34737013 34737033 TTGTTCTCAGTGATGTACACG 58 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 2 2 2 62 8 21479630 21480224 CAAACGCAGACAGGAAGTG 60 21479586 21479606 GAAGTCTCCATATTGTGTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Lpcat4 ENSRNOG00000005058 ENSRNOT00000006776 3 1 1 80 3 103730275 103730380 ATCGTGGATGTAGAGTTCCTC 59 103730421 103730440 GACGTTGTTGGCATAAAGGG 60 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 2 1 1 80 13 82456373 82456391 TGGGATCTCGAAATGTGGA 58 82456433 82457544 GAAGTGATGTTACACCTTTGC 58 NA Rattus norvegicus 81 Tlr5 ENSRNOG00000022067 ENSRNOT00000004821 1 1 1 60 13 101383293 101383312 AACATCAAAGATCCCGACCA 60 101383335 101383353 GTTGTAGCACCGAACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691445 ENSRNOG00000050842 ENSRNOT00000071711 1 1 1 60 15 35910083 35910104 GACCAAGGGAAAGTATCATCAG 59 35910122 35910143 TAAGAGGATTCAACATAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691445 ENSRNOG00000050842 ENSRNOT00000071711 2 1 1 60 15 35909598 35909617 TTGCTGTTTCAGAATGTCAC 57 35909639 35909658 GATATAGCCACATAGCGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdt1 ENSRNOG00000013970 ENSRNOT00000018923 3 1 1 89 19 55382667 55383066 CAGAACAACCATGTGTCGA 58 55383119 55383137 TGTATGGTAGGACAAGGCC 59 NA Rattus norvegicus 81 Olr215 ENSRNOG00000050698 ENSRNOT00000036261 3 1 1 60 1 170888125 170888147 GCTATTGTTATGTATGTCCTGCC 60 170888164 170888185 AGCTGATATTGTCTTGTTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a11 ENSRNOG00000010105 ENSRNOT00000013393 1 1 1 80 2 193867083 193868357 TTCACGAAGAACCAGAAGGA 59 193868400 193868418 ATCTAGCTGCCCATCACTG 59 NA Rattus norvegicus 81 S100a11 ENSRNOG00000010105 ENSRNOT00000013393 2 1 1 81 2 193867084 193868357 TCACGAAGAACCAGAAGGA 58 193868402 193868420 AAATCTAGCTGCCCATCAC 58 NA Rattus norvegicus 81 Prss30 ENSRNOG00000033266 ENSRNOT00000034340 2 1 1 89 10 13350779 13350928 TATTGCATTCAGGTGCTGG 58 13350708 13350726 CTTTCTCTGTCCTCAGGCT 59 NA Rattus norvegicus 81 Cited4 ENSRNOG00000046607 ENSRNOT00000072427 1 1 1 91 5 139598089 139598107 ATACGGCTCTTTCGGATCG 60 139598162 139598180 TAGCTGCAGACTGAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 mrpl9 ENSRNOG00000020869 ENSRNOT00000028316 3 1 1 81 2 195685187 195685205 TAAGTTGGTGGAGGACACG 59 195685249 195685953 CACTCCAATTTCGTCCACAG 59 NA Rattus norvegicus 81 RGD1308139 ENSRNOG00000018550 ENSRNOT00000025553 1 1 1 80 10 59630163 59631209 TCAAGTGATGTAGAGTTGGAC 58 59631251 59631269 TTTGTTAGCTGGACGAAGG 58 NA Rattus norvegicus 81 Nav3 ENSRNOG00000052157 ENSRNOT00000082100 2 1 1 80 7 52318388 52335396 AGCTATCTGGTGAAGACCC 59 52318326 52318344 TCTCTTCCAAGTTCTGCCT 58 NA Rattus norvegicus 81 Pcbp3 ENSRNOG00000001245 ENSRNOT00000001675 2 1 1 80 20 12591018 12591036 TGGAATCTAAGGTCTCGGA 57 12591080 12592273 TGCTTCCAACTTCCTTTCC 58 NA Rattus norvegicus 81 Dnah6 ENSRNOG00000015581 ENSRNOT00000020894 3 1 1 80 4 101081279 101081381 GTTCAATCCAAGGTAGACTCAG 59 101081220 101081239 GTTATCCAGGTCTACGTCCC 59 NA Rattus norvegicus 81 Csf3r ENSRNOG00000008759 ENSRNOT00000011694 1 1 1 80 5 144038573 144038789 TAAAGAGCTTCAGGAGCCG 60 144038833 144038851 TGCTGTGTCTCTTCTTGGG 60 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086,ENSRNOT00000042606 3 2 2 81 15 61910251 61913777 AAGTCATTTATGGAGTCTGGTG 58 61913816 61913837 GAGGGTTGATTTCAACTTTCCT 59 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000013291,ENSRNOT00000024624 1 2 2 80 16 7096438 7096533 ATGAAGCTCAATGTAGAAGAGG 58 7096572 7096592 AAATACGATAAGCAGAGGAGG 57 NA Rattus norvegicus 81 LOC688708 ENSRNOG00000022305 ENSRNOT00000044108 1 1 1 80 10 576411 578460 GAGATTGGTGAGAAGGGTG 58 576349 576368 AGAGTTACAATACACAGCCC 57 NA Rattus norvegicus 81 Rwdd1 ENSRNOG00000042916 ENSRNOT00000068777 1 1 1 80 20 27535611 27538493 AATTCCTGGAGGATGCTGG 60 27535549 27535571 CATCTTCTAGCTCCAAATCATCC 59 NA Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 1 1 1 80 13 49075591 49075609 GGCAAGTGGAAGAAGAGGA 59 49075649 49078749 GGCATACACTCGATAATCTTTGG 60 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401,ENSRNOT00000088212 1 2 2 94 11 89570212 89570230 GTGATGGTACGGTTAGCTG 58 89570288 89574237 ATAGTTTGTCCTTGGTGGC 58 NA Rattus norvegicus 81 AABR07032229.1 ENSRNOG00000048302 ENSRNOT00000073388 3 1 1 60 18 55464382 55464400 CTCCCTTCACTGACCTTCC 59 55464422 55464442 ACTTCAGGCATTTCTTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.1 ENSRNOG00000038099 ENSRNOT00000057979 3 1 1 60 X 68581242 68581263 AGCTTCCTTGTATCTACACCAG 60 68581283 68581302 ATAGATGGTAGCACCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph4a ENSRNOG00000047471 ENSRNOT00000064063 1 1 1 80 20 33954298 33954316 CCAAGTGATTGACCTGGTG 59 33954360 33958635 CAATTACAGCGACCCTGAG 58 NA Rattus norvegicus 81 Rsph4a ENSRNOG00000047471 ENSRNOT00000064063 2 1 1 80 20 33958697 33958715 CCTGACTACGTAGAGCAGG 59 33958753 33959481 AGAGGGTATATTCTGAATCTCTAGG 59 NA Rattus norvegicus 81 LOC100911932 ENSRNOG00000050278 ENSRNOT00000074361 3 1 1 60 1 220363797 220363815 TTTGCTCCCAGATGTTCCA 59 220363839 220363857 GAGAGCTGAGACAGAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek11 ENSRNOG00000042432 ENSRNOT00000046816 1 1 1 80 8 113866133 113866154 TGACAATCAGATAGTGGAATGG 58 113854256 113866094 TCTCGATGAAGTATCCTCCTC 58 NA Rattus norvegicus 81 Dstyk ENSRNOG00000021298 ENSRNOT00000004810 2 1 1 80 13 49211125 49211143 AAGACAGTGAGGACACTGC 60 49211185 49224930 CAATGTCCACTTCCTGTAGGA 60 NA Rattus norvegicus 81 Prpf19 ENSRNOG00000020897 ENSRNOT00000028373 2 1 1 80 1 226952903 226954814 TCATCCTTCTCAGGAATTGGT 59 226954856 226954874 ACACAAGAAGTGTTCGGGA 59 NA Rattus norvegicus 81 Pde4a ENSRNOG00000020828 ENSRNOT00000061100 3 1 1 80 8 22227726 22227745 TGGAGACGAAGAAAGTGACC 60 22228694 22228951 CCATGTTCCTGAGGACCTG 60 NA Rattus norvegicus 81 Pagr1 ENSRNOG00000020217 ENSRNOT00000027392 1 1 1 80 1 198449235 198449980 AAGACGTACACCAGGAAGC 60 198449173 198449192 TGTCGCTTCATGTCTGAGAG 60 NA Rattus norvegicus 81 Pip4k2a ENSRNOG00000016670 ENSRNOT00000022375 1 1 1 91 17 85538649 85543758 GATGTCGAGTTCCTTGCAC 59 85538576 85538594 TCAACCTCCTCTTGCTCTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000085124,ENSRNOT00000019265 3 4 9 60 9 81548510 81548529 GCTTGCTACTGGATAATCGT 58 81548550 81548570 GAATCCCTTAAGAACCTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000074295 3 1 3 62 3 147478107 147479174 CATGGAGAACTTGAGCGGA 60 147478063 147478082 GAGAAGACAGATACAGGCAC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Wbscr22 ENSRNOG00000033700 ENSRNOT00000044449 2 1 1 80 12 24677377 24677861 AAGCAAAGAAGTTCTACCTCTG 58 24678160 24678179 CTGCTTCCTGACTTTCAGTC 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138,ENSRNOT00000073528 2 2 2 80 1 1779148 1781225 TCTCTTTCACCAAGGAGGA 58 1781268 1781287 GAACTTACTAGGGACAGGTG 57 NA Rattus norvegicus 81 LOC500948 ENSRNOG00000031660 ENSRNOT00000041021 2 1 1 80 8 16347341 16347361 GAGCCAGATATGGATGTCTCC 60 16343532 16347304 GTGTATTAGGTACAGCAATCATCC 60 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000080462 2 1 3 83 5 159961494 159961512 CCTCTGCAAGAACTCTGGA 59 159960720 159960738 TCACAGCTCTTTCCTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Lipg ENSRNOG00000018694 ENSRNOT00000025257 3 1 1 80 18 70911032 70911050 CTATCCCAATGGTGGTGAC 58 70910045 70910989 TCTGAGATTGTTCCATACGC 58 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000058298 ENSRNOT00000088867 2 1 1 60 4 1431465 1431483 ATGCCAATCTCATCAACCA 57 1431504 1431525 GTACAAGAAAGTTGGAGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634,ENSRNOT00000067895 1 2 2 80 4 161652971 161653513 TCATCCTACATGGCATCGA 58 161652909 161652927 AGAGAACTTGAGGCTTGCT 59 NA Rattus norvegicus 81 Mllt11 ENSRNOG00000021110 ENSRNOT00000028664 2 1 1 84 2 196394260 196402082 GCTAACAGGGAATCATGCG 59 196394194 196394212 AGATCCAGTTCTGGGATGG 59 NA InUTR Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 1 1 1 60 3 165692664 165693414 TTTAACTGCTGCTATCCAGG 58 165692623 165692641 GGTCCAAGTCTTTCATGCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055485.1 ENSRNOG00000053774 ENSRNOT00000045977 1 1 1 80 7 4066703 4066770 CCTGTTCTTACATCAAGCCT 58 4066642 4066660 GGGCAATGGAAGTAGTGAG 58 NA Rattus norvegicus 81 Rn60_X_0750.2 ENSRNOG00000051310 ENSRNOT00000076781 1 1 1 60 X 74188577 74188595 ATGTCAAGCTGCACTACTG 58 74188619 74188637 GATCGATTCCTGACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000078180 3 1 2 120 15 28733452 28733471 ATTGTGTCCTAACCCATCCC 60 28732975 28733369 CTCACTAGCATCACCTCCG 60 NA InUTR Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000017730 1 1 2 104 15 28732977 28745382 TGAGAACGGTGATGCTAGTG 60 28732892 28732910 CAACATGCGTTCTGGTGAG 60 NA Rattus norvegicus 81 Myo7a ENSRNOG00000013641 ENSRNOT00000019053 3 1 1 80 1 163019134 163020322 GTGTGAGAAGGAGGATGAC 57 163019072 163019090 CGCTCCAGAATCATCTCAG 58 NA Rattus norvegicus 81 Etl4 ENSRNOG00000008666 ENSRNOT00000073718 2 1 1 80 17 87678764 87679475 AATACCGTCAGGCTAATGGA 59 87679516 87679536 TCTTAGAAGCAGGTAAGGAGG 59 NA Rattus norvegicus 81 Etl4 ENSRNOG00000008666 ENSRNOT00000073718 3 1 1 80 17 87588996 87592745 TGATGTGAGGAATATCCAAGAC 58 87592786 87592804 TTTGCCATGTGGTTAAACG 57 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 80 11 73712858 73712877 GAGAAAGAAGGTGTGAAGGT 58 73712917 73714657 TACTTCATCCTTAGAGTCACCA 58 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 3 2 2 81 2 259382705 259382723 TTTATCCTGGCCATGGACG 60 259381631 259382661 TATACCCTTCTGTCGTGCAG 59 NA Rattus norvegicus 81 Olr14 ENSRNOG00000050901 ENSRNOT00000048861 3 1 1 60 1 149632672 149632693 CTGACTTCCATGTCTTATGACC 59 149632633 149632652 TGGCATCATAGTTGAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 3 1 1 60 17 49516954 49516974 ACAGGTGGACTCTTCAATACG 60 49516996 49517014 TGAAGTCGTCCTTGTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps29 ENSRNOG00000004196 ENSRNOT00000005577 1 1 1 82 6 91456336 91456354 GATCCGTAAATACGGGCTG 58 91455442 91456293 CTTAGTCCAACTTAATGAAGCC 57 NA Rattus norvegicus 81 Zfp648 ENSRNOG00000031569 ENSRNOT00000050365 1 1 1 60 13 71656701 71656719 CATGATTCGTGACAGCCAG 59 71656740 71656761 CCTACCATCCTCTTCTTCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11f ENSRNOG00000002005 ENSRNOT00000002745 1 1 1 80 14 23996031 23996052 TAATAAGCCATCGTTTAGCCTC 58 23993530 23995187 ATTCTTATCCCACATCGACTG 58 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000054539 ENSRNOT00000079880 1 1 1 81 17 44763829 44763847 GACTTCAAGACCGACTTGC 59 44763892 44763910 ATAGACCCACAAGGTAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpd52l3 ENSRNOG00000042441 ENSRNOT00000066891 1 1 1 60 1 248196087 248196105 CTTAAGCTTGCGTGACCTG 59 248196129 248196147 CTTCCTCTTGAGTTCGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drg1 ENSRNOG00000018590 ENSRNOT00000025241 3 1 1 88 14 83468925 83468944 ATTCGTTTGAACAGCAAACC 58 83464682 83468874 TCACTCTGAGGACAAGTGG 59 NA Rattus norvegicus 81 Irf9 ENSRNOG00000019478 ENSRNOT00000026364 3 1 1 80 15 34286450 34287415 TCTGTAGAGATTTGGCCCAG 59 34287458 34287476 TCCTGTCCCAGAAATGCAG 60 NA Rattus norvegicus 81 Thrap3 ENSRNOG00000009977 ENSRNOT00000013570 3 1 1 80 5 144181672 144185184 TCAAAGAAGCAGAAGAAGCAC 59 144181612 144181631 GTAGGAGTGAGATGACTGGG 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671,ENSRNOT00000078956 3 2 2 80 4 100769456 100779740 CAACAGAAGTGATTTGTCCCA 59 100769396 100769416 GATGAGCTGCAAAGTCATCTG 60 NA Rattus norvegicus 81 Myl10 ENSRNOG00000028981 ENSRNOT00000041654 3 1 1 110 12 23012206 23014536 CAAGGCTGACTTCATTAAGGA 58 23011988 23012006 TCTAAGTTGCCACAGACGT 59 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 2 2 2 80 15 34457091 34457109 GAACCGAAACTGATGGGAG 58 34456432 34457049 GTAATACTCATTCTGCCGAGC 59 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 1 1 1 80 17 81411364 81412050 TACACAAATTCAGGGTTCTGG 58 81412091 81412110 GATGCTGCTATTATGTCGCT 58 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 2 1 1 80 17 81417222 81418683 GTCGTACGAAGATGTTGACTG 59 81418725 81418743 TCACAGGTGCTATCCATCC 59 NA Rattus norvegicus 81 Atl3 ENSRNOG00000021203 ENSRNOT00000028787 1 1 1 80 1 222764190 222764213 GAAACTACTGGGATTCAGATTTGG 60 222764250 222770379 CATCAGAACAACTGCAACCTC 60 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 2 1 3 80 6 131912783 131912804 CGATGAAGATGACCATCTACTG 59 131838872 131912743 GAAGGCTCATCTTTACCTGC 59 NA Rattus norvegicus 81 Hadh ENSRNOG00000010697 ENSRNOT00000014658 2 1 1 80 2 236362933 236362955 CCAGAAGACATTTGAATCTCTGG 60 236361315 236362893 AATCCAGGAGTGTCCTTGC 60 NA Rattus norvegicus 81 Kcnk16 ENSRNOG00000006422 ENSRNOT00000008461 3 1 1 86 15 4478841 4479301 CTACCATAGGTTATGGAAACCTG 59 4479347 4479365 TGAGTGGGATTCCCATCAG 59 NA Rattus norvegicus 81 Lancl3 ENSRNOG00000003756 ENSRNOT00000005042 3 1 1 81 X 14476541 14476563 GTGCATATGTCTTCCTTCTTCTC 59 14476602 14490195 AAGAACTGAGCAAACCTTTGG 59 NA Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485 1 1 2 94 20 3891808 3891998 TACCCGCAGGTAACTTCTG 59 3892056 3892074 ACACTGTAATAGGCTGCCG 60 NA Rattus norvegicus 81 Mlph ENSRNOG00000019763 ENSRNOT00000080449 1 1 1 88 9 98092558 98092576 CTGATGAAGACAGCATCCC 58 98092627 98094937 CTCCGAGATCTGAGTCTCAG 59 NA Rattus norvegicus 81 Olr838 ENSRNOG00000050363 ENSRNOT00000051234 2 1 1 60 5 59292673 59292692 TTTCTCACTCCCAGGAAGAC 59 59292632 59292652 AAGACAGAAACATCTGCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lix1 ENSRNOG00000012988 ENSRNOT00000017442 1 1 1 80 1 59199461 59209698 CTGGAGTTTCAGGAACTAATGAC 59 59209738 59209756 GCACTTTGTTTCACGGAGG 60 NA Rattus norvegicus 81 Abca17 ENSRNOG00000039656 ENSRNOT00000060818 3 1 1 80 10 13657709 13660063 CTTTGCGTATTCAAGGTTCTG 58 13657649 13657668 CGTAGAGCTTATCGAAGTCC 58 NA Rattus norvegicus 81 Spcs1 ENSRNOG00000018075 ENSRNOT00000024447 2 1 1 81 16 7080772 7081246 TTTCTCGTGTTTGCTGACAC 59 7080710 7080728 GCCTGAGTCTTGAACAGGT 60 NA Rattus norvegicus 81 Mlst8 ENSRNOG00000009667 ENSRNOT00000014269 1 1 1 80 10 13841617 13841730 CGTCACAGCTTCTTCAGAC 59 13841555 13841573 TGATGGCCACCATACTCTC 59 NA Rattus norvegicus 81 Parvg ENSRNOG00000052064 ENSRNOT00000085216 3 1 1 80 7 125300201 125300219 ATTGGACAGCTAGAAGGCT 58 125300263 125304976 ATTGTGCAGCATCTCTGTG 59 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317,ENSRNOT00000079407 3 2 2 81 5 165415729 165415747 CCTTCCACTCCGACTACTC 59 165415791 165416365 CTGCATTCATCCACATCCTC 59 NA Rattus norvegicus 81 LOC100360087 ENSRNOG00000031506 ENSRNOT00000044711 3 1 1 60 5 152326451 152326471 CTCTGTGACTTCTTGGAAAGC 59 152326490 152326511 CCATCTTCTTGATGAGCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046144 ENSRNOT00000072019 1 1 1 152 17 43616408 43616426 CTACCAGAAGTCCACCGAG 59 43616542 43616560 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl13 ENSRNOG00000015335 ENSRNOT00000020635 2 1 1 115 19 55918426 55918915 AAGGGAGACAGTTCTGCTG 59 55919863 55919881 TTCTCCTCTTCCGTGATGG 59 NA Rattus norvegicus 81 Gemin7l1 ENSRNOG00000034168 ENSRNOT00000040934 3 1 1 61 4 78954727 78954745 GAAGGTGTACACGTGACTG 58 78954684 78954704 ACGTAGAAGTTAGCTACATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdf2l1 ENSRNOG00000001859 ENSRNOT00000002540 2 1 1 80 11 88123022 88123889 TATCCAACAACCAGGAGGT 58 88123932 88123951 CAGAACATCGTACTGTCCAC 58 NA Rattus norvegicus 81 Sdf2l1 ENSRNOG00000001859 ENSRNOT00000002540 3 1 1 80 11 88123021 88123889 CTATCCAACAACCAGGAGGT 59 88123930 88123950 AGAACATCGTACTGTCCACAG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 1 2 4 80 9 111205732 111205750 GAACCAGACTCAAACGACC 59 111200742 111205690 GATAAAGACTGTCCTGCTCAC 59 NA Rattus norvegicus 81 Zfp422 ENSRNOG00000013379 ENSRNOT00000018050 2 1 1 229 4 148761417 148761435 TCTCCGCCTCTTCCTAGAG 60 148759399 148759418 TTGCACTTCGAGAAATACCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam151a ENSRNOG00000007799 ENSRNOT00000010288 1 1 1 80 5 126346347 126346365 GTAGAGTGGTTGGCTCTGG 60 126346405 126346862 TAGGATCATGCCTTCTCTATCAG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000032542 ENSRNOT00000046690 3 1 1 60 3 147490560 147490578 TGATCCGTAAATACGGGCT 59 147490518 147490536 ATGTCCTTCGCGTACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdm4 ENSRNOG00000009696 ENSRNOT00000012984 2 1 1 80 13 49796676 49798827 GACAAGAAGATGGTTGAAGGG 59 49796616 49796638 GACTTCCACATCAGTATCATCAC 59 NA Rattus norvegicus 81 Zfp580 ENSRNOG00000016274 ENSRNOT00000021772 2 1 1 256 1 72339270 72339288 CTCCACTTCTTCCTCGGTG 60 72339032 72339051 AAGTAAAGGGCTTGAGGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan11 ENSRNOG00000054360 ENSRNOT00000087834 1 1 1 80 4 160495386 160495404 GTCATGACAACTGGCTTCC 59 160495445 160510246 CAACAGGCAGAAATATGTGGAG 60 NA Rattus norvegicus 81 Olr816 ENSRNOG00000005431 ENSRNOT00000007200 2 1 1 60 4 72567646 72567664 CCCTGATCTACAGCCTGAG 59 72567687 72567706 TTCCACAGTGATCTTCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470,ENSRNOT00000091230,ENSRNOT00000059814 1 3 3 80 14 34161123 34165281 TTGTTCAACAGGGTCACGA 60 34161061 34161079 GAAATGGATGGTGGTTGGG 59 NA Rattus norvegicus 81 Sox12 ENSRNOG00000007514 ENSRNOT00000009852 1 1 1 65 3 147865180 147865198 CACAACGCTGAGATCTCCA 60 147865133 147865151 AATCTTCTCCGAGTCCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2g1 ENSRNOG00000020827 ENSRNOT00000028261 3 1 1 80 1 83627567 83629165 TCAAGGTTATGGTTTAGCTCTG 58 83629205 83629224 AAGTTTCGAAGGACAGTCAG 58 NA Rattus norvegicus 81 Otub2 ENSRNOG00000009117 ENSRNOT00000012124 2 1 1 84 6 127295617 127295635 GGGAACTGCTTCTACAGGG 60 127295680 127297613 GCTCTTTGAACTTGAGGATCTC 59 NA Rattus norvegicus 81 Dnajc16 ENSRNOG00000012503 ENSRNOT00000017247 3 1 1 80 5 160328200 160328218 TGCTGTCCCTCATCTTCTC 59 160328051 160328157 GCTCCTCATTTGAGTCACTG 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202,ENSRNOT00000079176 2 2 2 95 12 30144015 30144033 CAATGAAGAGCCACAAGCT 59 30126321 30136745 TCTCTTCCACCATCAGCTG 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179,ENSRNOT00000085126 2 2 2 80 15 3477688 3477706 TACAACTCCCATCAAGCTG 57 3473841 3477646 CTCTCGTCAAATACCTCTTCC 58 NA Rattus norvegicus 81 AABR07006774.1 ENSRNOG00000050417 ENSRNOT00000075515 3 1 1 89 1 257727286 257727307 GAAGACATAACATCAGAGAAGC 57 257727357 257729180 AGAAGCAAAGACCTGAGTC 57 NA Rattus norvegicus 81 RGD1304694 ENSRNOG00000031269 ENSRNOT00000042070 2 1 1 80 7 125864926 125864944 GGACAGCAAAGGAGAAGAG 58 125863780 125864882 TCACTGAACACCTCTTCGA 58 NA Rattus norvegicus 81 RGD1565912 ENSRNOG00000029600 ENSRNOT00000043909 3 1 1 60 5 72321465 72321484 CGTGATCTCTGAGAAGTCCC 60 72321424 72321442 CTGCTCATCGATGTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600,ENSRNOT00000034553 1 2 2 80 1 81685452 81685475 CTGGAATCTACCACCTAAATATCC 58 81685511 81689070 TTAACAGAGGGTACACAAAGAC 58 NA Rattus norvegicus 81 Phlda1 ENSRNOG00000004019 ENSRNOT00000005361 3 1 1 156 7 54248591 54248609 TCATCCACACCAACTCCAG 59 54249121 54249141 ATAGTAATGCACTCTTCCCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Casc4 ENSRNOG00000016357 ENSRNOT00000044158 3 1 1 82 3 113855399 113860610 TTCCTGCTGCTTTAAAGAAGC 60 113860652 113860672 CTGTCCAGTTAGAAGATGGGA 59 NA Rattus norvegicus 81 Mtfmt ENSRNOG00000014602 ENSRNOT00000019671 1 1 1 80 8 70960911 70960929 CTGTGTCAAGTGGGAGGAG 60 70960971 70981044 GTTTGCAGTGGAACTATGTCC 60 NA Rattus norvegicus 81 Crygn ENSRNOG00000009226 ENSRNOT00000012285 3 1 1 138 4 6903267 6905955 TGTAGGCATGCATGGAGAG 60 6906057 6906075 CTTGATGGCGTTGACACAG 60 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 2 2 2 80 10 70150133 70150152 CTGGCTGACATGATAAACCG 59 70150193 70150447 AGGCTCATATGTACCCTTCAC 59 NA Rattus norvegicus 81 Ednrb ENSRNOG00000010997 ENSRNOT00000014747 2 1 1 80 15 88014064 88014085 CTTCATACAGAAGGCTTCTGTG 59 88013873 88014025 GAAGCAACAGCTCGATATCTG 59 NA Rattus norvegicus 81 Btd ENSRNOG00000019656 ENSRNOT00000061063 3 1 1 135 16 7783725 7784376 CCAAAGCGATTTACGGTCTG 60 7784474 7784492 CCACGTAGTACTCAGCCTC 59 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 2 2 2 80 7 11501687 11501705 AGTGAGGTGTACTCCATGG 58 11501486 11501644 GTAATCCATGCCAACCTTGG 59 NA Rattus norvegicus 81 Mos ENSRNOG00000008567 ENSRNOT00000011602 2 1 1 61 5 16746798 16746818 CCTTGGTACCATAATCATGGA 57 16746757 16746775 CACCGTAGATGACTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867,ENSRNOT00000088697 1 2 2 80 10 94473744 94474696 GACATCACCATGTACCAACC 59 94474738 94474757 TGTGAAGGCTTCATCAATGG 59 NA Rattus norvegicus 81 Pcdhgb7 ENSRNOG00000039454 ENSRNOT00000060461 3 1 1 60 18 30901705 30901723 CTCAAGTCAGAGCATGGGA 59 30901746 30901765 ATGATGGAGTAGGAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 1 1 1 80 4 157701385 157704481 CCCAGCTTAGAGCATTTCAG 59 157701324 157701345 TGCTGTAGATTGTATCGAAGTG 58 NA Rattus norvegicus 81 Lrrc42 ENSRNOG00000009983 ENSRNOT00000013575 1 1 1 80 5 126843361 126843379 TATCTTGTTGCTGGCTTGG 58 126842324 126843317 GGAGCTGAGTTACACTGGA 59 NA Rattus norvegicus 81 Scn2b ENSRNOG00000016221 ENSRNOT00000021819 1 1 1 80 8 49426293 49426312 TATACCGTGAACCACAAGCA 60 49426354 49426604 CTGGAGGAACATCTCCTCTG 59 NA Rattus norvegicus 81 Mir879 ENSRNOG00000041321 ENSRNOT00000063074 2 1 1 60 4 21673688 21673709 TCTAGATCCAGAGGCTTATAGC 59 21673649 21673667 AAGCTTGAAGCCATAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata33 ENSRNOG00000038239 ENSRNOT00000058216 2 1 1 88 19 56010231 56010331 AGAGAAGAAAGTTGAGGAGGA 58 56010381 56010399 ACTGCTTGGTCTCCTTCTC 59 NA Rattus norvegicus 81 Ctxn3 ENSRNOG00000022957 ENSRNOT00000037529 3 1 1 60 18 52550987 52551005 TCTAGACCCATATCGGAGC 58 52551029 52551047 CTCTAGACCTTCAAGCCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk3a ENSRNOG00000013593 ENSRNOT00000018365 1 1 1 80 7 125921239 125921257 TGTGCATGTTCGATAGCTC 58 125921300 125922237 AGGAGATAGCTGAGTCTACC 58 NA Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000064122 2 1 2 80 7 98679992 98680011 TTCTTCCACAATGCGATACC 58 98675865 98679949 TTCAATTTGGGTTCCTGCA 58 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311,ENSRNOT00000065909 3 2 2 90 5 59063817 59063835 AAAGTGGAGATTTGTGGGC 58 59063888 59063992 AATTCTTGCACGGAGTTCTC 59 NA Rattus norvegicus 81 Eed ENSRNOG00000017509 ENSRNOT00000024082 2 1 1 80 1 154212673 154215813 AGACGAGAATGACGATGCT 59 154212611 154212631 GCATTTGGTGTATTTGTGGGT 60 NA Rattus norvegicus 81 Unc45b ENSRNOG00000009466 ENSRNOT00000064625 1 1 1 80 10 70284573 70284592 ATGTTTGAGAACCATGACCA 58 70284633 70287079 CTCCTGAACCTCCTTATTGAG 58 NA Rattus norvegicus 81 Sorcs1 ENSRNOG00000011313 ENSRNOT00000015979 3 1 1 80 1 270001932 270001951 ACACTATCACGGTACAGGTC 59 269996371 270001890 AGCGGAATTCCTCGTATACC 60 NA Rattus norvegicus 81 Nubp1 ENSRNOG00000002574 ENSRNOT00000003479 3 1 1 80 10 5336610 5337103 GGTCTCCAGTGTATGTGGAG 60 5336549 5336567 AGATGACAGCATCATCCGG 60 NA Rattus norvegicus 81 Phf13 ENSRNOG00000009046 ENSRNOT00000012407 1 1 1 96 5 169164392 169166053 CTATCCGAAGGAGGAGCTC 59 169164314 169164332 AGAGAAACCAGTGTCCCAG 59 NA Rattus norvegicus 81 Phf13 ENSRNOG00000009046 ENSRNOT00000012407 2 1 1 97 5 169164392 169166053 CTATCCGAAGGAGGAGCTC 59 169164313 169164331 CAGAGAAACCAGTGTCCCA 59 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054,ENSRNOT00000071503 1 2 2 80 1 100709009 100709028 TCGATCAACTGGAAACAGTG 58 100709070 100710222 GAGGACCATCTGTCCTAGAG 58 NA Rattus norvegicus 81 Cnga1 ENSRNOG00000004778 ENSRNOT00000006469 1 1 1 80 14 38156631 38156653 GAAGAATCAGAGAATGAGGACTC 59 38156693 38158188 CAAGTAATGCTCCCTCTGG 58 NA Rattus norvegicus 81 A2ml1 ENSRNOG00000007247 ENSRNOT00000009557 3 1 1 80 4 161876614 161876635 GTGAAGAAGCAGAAATCAAACG 59 161874104 161876573 GTCACTGTCCTGAGACTCC 59 NA Rattus norvegicus 81 Cdh2 ENSRNOG00000015602 ENSRNOT00000021170 1 1 1 80 18 8179626 8179649 TAGACCCAGAAGATGATGTAAGAG 59 8161291 8179589 AGTCATAGTCCTGGTCTTCCT 60 NA Rattus norvegicus 81 Phc1 ENSRNOG00000015191 ENSRNOT00000020529 1 1 1 80 4 155098566 155098585 GCTTCCTACAAAGGCATCAC 59 155098266 155098526 GGTTCAGCTTTCTCTACAAGAC 59 NA Rattus norvegicus 81 Vars2 ENSRNOG00000000833 ENSRNOT00000091232 3 1 1 80 20 3598490 3598508 CAGAAGCAGCTTGATGACC 59 3598552 3598658 CTGGAGGGAGGAAATCCTC 59 NA Rattus norvegicus 81 Fam89a ENSRNOG00000019022 ENSRNOT00000025705 3 1 1 81 19 57503353 57514614 CAAGGAGATGGTTGGTCTC 58 57503290 57503308 GTACTCCTGAATGGACTCG 57 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 3 2 2 80 7 130167104 130167122 GGACCTACCTAAGCAGGTC 59 130166744 130167060 TAGGAGGTGTAGAGGCCTG 60 NA Rattus norvegicus 81 Psph ENSRNOG00000000925 ENSRNOT00000001228 3 1 1 81 12 30520621 30520640 CAGTCATCAGAGAAGAGGGA 58 30520684 30521459 GCTCTCCGTGTCATTTCAG 59 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 1 3 3 80 15 4039969 4040178 TATCACCAGCTTATTGGATCAG 58 4039910 4039929 TGGATAACTGGAGCAAACAC 58 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943,ENSRNOT00000080056 3 2 2 82 7 139635519 139635542 GACTTTAGAAAGAAGAGTGTCACC 60 139633889 139635480 AGGTATTGCAAGAGGATCCTG 60 NA Rattus norvegicus 81 Psmd3 ENSRNOG00000028103 ENSRNOT00000039836 3 1 1 81 10 86608272 86608374 TCACCCAAGCTGTTAGGAC 59 86608416 86608437 CCATCTGTTTGAAACTTCTCCC 60 NA Rattus norvegicus 81 Cpne4 ENSRNOG00000026577 ENSRNOT00000016749 1 1 1 80 8 113572162 113572181 GCTCCCATCATTCAGAAGGT 60 113572222 113577372 CAGCAGGATGAAATATTGCGA 59 NA Rattus norvegicus 81 LOC606294 ENSRNOG00000000395 ENSRNOT00000000444 1 1 1 80 20 32193131 32196841 CCATGCAGGACAACATAGG 58 32193069 32193087 CTTCATCCAGCTCCTTCCT 59 NA Rattus norvegicus 81 Gabarapl1 ENSRNOG00000053362 ENSRNOT00000077356 1 1 1 80 4 163298979 163298999 GACGCCTTATTCTTCTTTGTC 57 163299039 163301648 CTCATGGTTGTCCTCATACAG 58 NA Rattus norvegicus 81 Uts2b ENSRNOG00000038512 ENSRNOT00000042650 3 1 1 80 11 76833858 76833876 CCTGGCTTTGTTGTCTGTG 59 76833917 76838369 GGAAATAACTCATGTCCTGAGC 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058,ENSRNOT00000086447 2 2 2 80 3 1542953 1542973 TGACACCTTCCAATACACCTC 60 1542412 1542911 AGGGTGAATGAGGATCTGC 59 NA Rattus norvegicus 81 RGD1308601 ENSRNOG00000017215 ENSRNOT00000038767 1 1 1 80 18 74037398 74037417 GCACAGTAATTCAGTAGGCG 59 74025908 74037355 GGATCCAAATGACCTGCCT 60 NA Rattus norvegicus 81 RGD1560436 ENSRNOG00000025065 ENSRNOT00000038013 1 1 1 80 5 142938616 142938772 AACCCTTGTGTCAGATATCCT 59 142938813 142938832 TCCAGATCTCCAGATACTGC 58 NA Rattus norvegicus 81 Keap1 ENSRNOG00000020878 ENSRNOT00000028360 2 1 1 82 8 22254275 22254294 CATAGATGGCCACATCTACG 58 22252727 22254231 CTCGATCTGGCTCATATCTC 57 NA Rattus norvegicus 81 AABR07015006.1 ENSRNOG00000021986 ENSRNOT00000032337 2 1 1 80 14 44790477 44790497 TGTGTCAAGAGAAGATTCTCG 58 44790537 44790561 GTGTCTTCTTTAATACCGCCA 59 NA Rattus norvegicus 81 AABR07015006.1 ENSRNOG00000021986 ENSRNOT00000032337 3 1 1 80 14 44791042 44791061 TGAAAGGAGGAAACTTTGGA 57 44791104 44791125 CACCTTGGTTTGGTTTAGC 57 NA Rattus norvegicus 81 Serpina12 ENSRNOG00000042634 ENSRNOT00000012960 3 1 1 107 6 127702789 127704646 TTTACTTTCAAGGCAGGTGG 58 127702701 127702719 TTTGGAACATCATGGGCAC 59 NA Rattus norvegicus 81 Arhgap19 ENSRNOG00000048166 ENSRNOT00000071417 3 1 1 80 1 261033386 261033405 TCTAGGAGAGTTACCAGAGC 58 261031206 261033344 TCAAACTGCATCAGATCAGC 59 NA Rattus norvegicus 81 Mcee ENSRNOG00000016327 ENSRNOT00000021884 3 1 1 86 1 125239752 125239770 AGTGATAGTCCGATCGCAG 59 125239818 125252403 TGCATTTATGTTGTCCACCTC 59 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000089138 1 1 2 96 17 6684640 6689007 GTGGTTTGAGGAGAAATGCTC 60 6689065 6689083 CAAGACAGTCCCGGATCAG 60 NA InUTR Rattus norvegicus 81 RGD1560028 ENSRNOG00000006782 ENSRNOT00000008947 1 1 1 93 4 96312639 96312658 CAAAGGGCTTTCACAATGCT 60 96320739 96326650 CATACTTAATCTCAAGTCTCTGCAC 60 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321,ENSRNOT00000015482 1 2 2 80 3 149152566 149152584 CCAGCACTTTAATCTGGCC 59 149152628 149153506 ACCATGGCTTTCTCCAGAG 59 NA Rattus norvegicus 81 Gzmc ENSRNOG00000045641 ENSRNOT00000075752 1 1 1 80 15 36450413 36450890 TGCAGAGGAAGATCAATGAC 58 36450352 36450371 CACAGGGATAATCTGCTGTG 59 NA Rattus norvegicus 81 Zc3h12a ENSRNOG00000009131 ENSRNOT00000012314 1 1 1 80 5 143114783 143114801 GCCATACAGACATCACCGT 60 143113803 143114739 TGTGCTGGTCTGTGATAGG 59 NA Rattus norvegicus 81 Mmp15 ENSRNOG00000012622 ENSRNOT00000017629 3 1 1 82 19 10082713 10084088 CTTCTTCAAAGGTAACCGCT 58 10082650 10082668 TACCATAGCTGCTCAGTGG 59 NA Rattus norvegicus 81 Vom1r19 ENSRNOG00000032996 ENSRNOT00000042702 2 1 1 60 1 61095809 61095827 GGTACAGCATATACACGCA 57 61095851 61095869 GGTAGCTTGATCCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502618 ENSRNOG00000039210 ENSRNOT00000060011 1 1 1 80 3 14595095 14598797 GTGGGAAGCTACATTTGGT 58 14595033 14595051 GATGACCTTCTGGTTGACC 58 NA Rattus norvegicus 81 Npbwr1 ENSRNOG00000007640 ENSRNOT00000010032 1 1 1 60 5 13380639 13380660 ATCTCTTACTTCATCACCAGTC 57 13380680 13380699 CATAGAGGAAAGGGTTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181b2 ENSRNOG00000035563 ENSRNOT00000053686 1 1 1 60 3 23151467 23151486 TCAACATTCATTGCTGTCGG 59 23151507 23151527 TTGCATTCATTGACCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja10 ENSRNOG00000006478 ENSRNOT00000008469 2 1 1 60 5 47835912 47835931 CAGCCATCTCCTTGTTACTC 58 47835871 47835889 ATGATCTTCCTGATGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase10 ENSRNOG00000010261 ENSRNOT00000013619 2 1 1 60 15 27933419 27933438 ACAAAGAAATGGCAGTACCT 58 27933460 27933479 CCCACTTCATCTTCACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696,ENSRNOT00000091557 3 3 3 80 18 15520978 15520996 TCAATGGCTTTCCCAATGC 59 15521036 15521239 TGTATCCAGAGTAGTGAACTCTG 59 NA Rattus norvegicus 81 Qtrt1 ENSRNOG00000007158 ENSRNOT00000010030 1 1 1 81 8 22451788 22452675 TGCCTGAAAGAGATGACCA 59 22452720 22452738 AGAACTGCTCCTTGCTCTC 59 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 1 2 2 80 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Rbm8a ENSRNOG00000021215 ENSRNOT00000028807 1 1 1 105 2 198755367 198755685 GATGGTGACGAAAGCATCC 59 198755870 198755888 CATAATCTTCCCGCATCCG 59 NA Rattus norvegicus 81 LOC100912252 ENSRNOG00000042206 ENSRNOT00000068160 3 1 1 92 17 5359165 5359184 CTTCTCCTGTCTTCTGTTGC 59 5359239 5360014 TAGGAACTGCTTTCCTGGG 59 NA Rattus norvegicus 81 Olr1646 ENSRNOG00000053618 ENSRNOT00000081045 1 1 1 60 15 32925567 32925586 TTCCTCCTGACCTACTTCCT 59 32925526 32925547 CAAGGGTGATGAAGATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsd17b3 ENSRNOG00000019096 ENSRNOT00000025850 1 1 1 80 17 1579595 1580539 GCTCATGAAATCTTGGCGA 59 1579533 1579552 CAGGAGAAATCTTTGGGTGG 59 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 1 2 2 81 13 50987628 50987646 TTGACTGGGAATACCCAGG 59 50987690 50987906 TTGGCCAAATCCTGTATCAG 58 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 3 2 2 81 13 50993606 50993625 GGGATGACTTCAAAGGTTCC 59 50993669 50994200 GATGAAAGGCTCAGCTCCT 60 NA Rattus norvegicus 81 Olr713 ENSRNOG00000046126 ENSRNOT00000041870 1 1 1 60 3 78340558 78340576 TTCTACTGCCATCTTGCCC 60 78340516 78340539 GGAAATGGTCTTCTTATCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf2 ENSRNOG00000005167 ENSRNOT00000006889 2 1 1 80 3 5467490 5467963 CCGTAAACTCAGGAAGAAGG 58 5468006 5468024 GAACTGAAGTTCTTGGGCT 58 NA Rattus norvegicus 81 Cdca4 ENSRNOG00000013898 ENSRNOT00000018596 3 1 1 141 6 137421115 137421133 GGTTTGAACGAAAGCTCCG 60 137398153 137421010 TAGCAAACATCCTGTCCGG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Mrps34 ENSRNOG00000015479 ENSRNOT00000021075 2 1 1 125 10 14257552 14257654 TTTCAAAGGGAAGAGTGAGG 58 14257742 14257760 AATCTGTCCTCTGCTTTCC 57 NA Rattus norvegicus 81 Vegfb ENSRNOG00000021156 ENSRNOT00000050891 1 1 1 80 1 222241077 222241287 CAAGTCCGAATGCAGATCC 59 222241015 222241033 ACATTGGCTGTGTTCTTCC 58 NA Rattus norvegicus 81 Thy1 ENSRNOG00000006604 ENSRNOT00000008685 2 1 1 80 8 48385609 48385627 GTGTGAACTTCGAGTCTCG 58 48385671 48386090 CACTTGACCAGCTTGTCTC 59 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586,ENSRNOT00000073105 3 2 2 80 12 31166570 31175508 CTTCCTTAACTTCAGCTCCG 58 31166509 31166528 ACTGAGTAGGTGAGGTTTCC 59 NA Rattus norvegicus 81 Cd164l2 ENSRNOG00000009505 ENSRNOT00000012626 1 1 1 90 5 151414689 151416250 CAAGTACGACAGGGAGTCC 60 151416304 151416322 CTCAGTACCAGCACAATGC 59 NA Rattus norvegicus 81 Atp13a3 ENSRNOG00000001724 ENSRNOT00000002350 3 1 1 82 11 73957899 73962705 GATGAAATGGAGATACATGGCT 58 73962746 73962766 AAACCACCAGTACAAATCACC 59 NA Rattus norvegicus 81 Ptpn7 ENSRNOG00000005807 ENSRNOT00000007833 1 1 1 80 13 51961073 51962446 GACCATCTTGCCAAATCCC 59 51962490 51962508 TTGGCATTGATGTAGTCGC 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 2 2 2 80 5 126671246 126671265 TTGTCCGGTTTACACTACCT 59 126671306 126674103 CATCTACTACACCTCGTAGGA 58 NA Rattus norvegicus 81 Mfap3l ENSRNOG00000011775 ENSRNOT00000015759 1 1 1 84 16 32753180 32753201 TCATGTTACTCTACACATCCTG 57 32752409 32753138 GATCAAGGATCTAAGTTCCTGG 58 NA InUTR Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506,ENSRNOT00000085094 3 2 2 80 2 85579411 85579430 AGAATGCTGTGGATTTCTCG 58 85579470 85594596 TGAAGAGATAGTTTCTTGCTCC 58 NA Rattus norvegicus 81 Olr472 ENSRNOG00000009670 ENSRNOT00000012814 1 1 1 60 3 73352959 73352979 GATTTAACCTCTCCCTCTCCC 59 73352998 73353019 GCAGGAAAGATATACAGGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930,ENSRNOT00000074573 3 2 2 80 7 106751222 106751241 TGCTTCGAATGGATAGGAGG 59 106747903 106751180 CGGTGATGAGTTCTTTGCTG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 3 1 5 88 8 6152357 6152375 GCAGGAGTTATTTCGGCAG 59 6140371 6140687 AGCTAATTCCCGCTCTGAC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000065953 3 1 2 87 3 6780891 6780909 GAACCAGATGAAAGGCCTG 59 6780960 6782361 AAGTTAGCCCTTGAACTGC 58 NA InUTR Rattus norvegicus 81 Rhoj ENSRNOG00000021919 ENSRNOT00000031979 3 1 1 87 6 98356948 98356966 ACAACGTTCAGGAGGAGTG 60 98357017 98358944 CGGAGATCAATCTGGGTCC 60 NA Rattus norvegicus 81 Tbcd ENSRNOG00000036658 ENSRNOT00000054913 3 1 1 80 10 110782017 110782038 TACTACTTCTCCCATGGATGTG 59 110782079 110782725 ACTGTCTGGCAAATTCTCG 58 NA Rattus norvegicus 81 Heca ENSRNOG00000060972 ENSRNOT00000081259 3 1 1 80 1 13049652 13049673 GATGGAACTCTGTTCTTAAGCC 59 13043280 13049612 CATGAGTCTCCCTTGAAGGT 59 NA Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000017101 2 1 2 80 X 123209913 123209932 CCTTTCTGACCTCACTCCTG 60 123209970 123212618 GTGATGGTACTTGAAGGTAAAGTG 60 NA Rattus norvegicus 81 Syna ENSRNOG00000050672 ENSRNOT00000074788 1 1 1 60 12 25161156 25161174 GAAGCCTTTCCATCAGAGC 59 25161198 25165167 TTATGGAAGCTGGACCGAC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Coa4 ENSRNOG00000025385 ENSRNOT00000038764 2 1 1 83 1 165549345 165549365 AGAACTTACTGCCTACAGACC 59 165549410 165551294 TGACATCTTGAGGAACCCG 59 NA InUTR Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458,ENSRNOT00000081087 1 2 2 80 14 37214457 37216375 TCACCAATTCTTAGAGCAATCG 59 37214398 37214416 ATTGTCCTGCTGAACTCCA 59 NA Rattus norvegicus 81 Tex11 ENSRNOG00000025672 ENSRNOT00000041731 3 1 1 80 X 70923199 70923217 CAGTGAACCTGTGGAACTG 58 70910104 70923156 TGTAACACAGTTTAGCTGCC 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 1 1 2 112 3 114918609 114918627 ATGAGGTGCTGGTACTTGG 59 114918703 114920906 GAAATGCCTCTCACTGGGT 60 NA Rattus norvegicus 81 LOC100911779 ENSRNOG00000017230 ENSRNOT00000023215 1 1 1 80 1 263503375 263506439 TAGTCTGTTTCCAGGGTCTG 59 263503314 263503334 GAGGGATGTCATAGGACTCTG 59 NA Rattus norvegicus 81 Vom1r56 ENSRNOG00000033061 ENSRNOT00000040738 1 1 1 60 1 66664377 66664399 GCTCCTGGCTTATTAACATACTC 59 66664417 66664437 GATTTGGCTACTACCATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r65 ENSRNOG00000047177 ENSRNOT00000033032 2 1 1 80 14 221423 222822 AGGAGAAACATTGGTTCCCT 59 222864 222883 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Eif2ak3 ENSRNOG00000006069 ENSRNOT00000008451 2 1 1 80 4 98680086 98680107 GATGATGTTGTTCTGGTTGGAG 60 98680145 98681920 ACAGATATACCTCAGCTTTCCA 59 NA Rattus norvegicus 81 Eif2ak3 ENSRNOG00000006069 ENSRNOT00000008451 3 1 1 80 4 98680087 98680107 ATGATGTTGTTCTGGTTGGAG 59 98680146 98681921 AACAGATATACCTCAGCTTTCC 58 NA Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000091096 1 1 2 82 20 4067219 4067664 CTACCAACAAGGTTCCTGAG 58 4067156 4067174 TACAAAGCAGATGAGGGTG 57 NA Rattus norvegicus 81 Snap29 ENSRNOG00000001867 ENSRNOT00000002550 1 1 1 80 11 87839399 87839419 CAAATCCAAACCAGTAGAGCC 59 87834890 87839359 ATGGCTTCTTTCAATCTGCTG 59 NA Rattus norvegicus 81 Olr1373 ENSRNOG00000039760 ENSRNOT00000060989 1 1 1 60 10 12603245 12603264 GAACCCTTTCATCTACAGCC 58 12603286 12603305 GAGCACTTTCCTTAAAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 3 1 1 80 4 56996951 56996970 TCTCATGTTCCTTCTCACCT 58 56997013 56997352 CAGAGGGAGAAAGTCTGCA 59 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 2 2 2 81 13 53318590 53319239 GATACTGAAGGGACTACTGGA 58 53319281 53319300 GTTGACCAAATCTAGGCCTC 58 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 3 1 1 80 10 53821148 53821167 TGATGACCCACCTTCATGAG 60 53821206 53821314 CTGAGTAGGTGTAGATCATCCAG 60 NA Rattus norvegicus 81 Scyl1 ENSRNOG00000023668 ENSRNOT00000032387 1 1 1 80 1 221128804 221128995 TATATCGATGGGTTGGAGACAG 59 221128745 221128763 TGCCTTGAGGTATGTTCCC 59 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 2 1 1 74 1 81844129 81845856 CTAAGCTTGTGCTCTTTGGC 60 81844074 81844092 AAGGGAAAGAGACACCACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362216 ENSRNOG00000017557 ENSRNOT00000023592 2 1 1 85 9 93064618 93068000 CAGTTCAAGAGCACCTCCA 60 93068049 93068067 ATTCCCACGGTCTTCACAG 60 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 3 2 2 80 16 37133283 37133303 GTTCTCACATAGGTTCTGTGC 59 37132171 37133244 CACAGTACATAGACAGCATCTG 59 NA Rattus norvegicus 81 Haghl ENSRNOG00000019612 ENSRNOT00000026536 1 1 1 80 10 15153443 15153462 ATGATGTACCTACTGTGCCT 58 15153063 15153400 GGACTGGATCCTCTGTCAC 59 NA Rattus norvegicus 81 Haghl ENSRNOG00000019612 ENSRNOT00000026536 2 1 1 80 10 15154046 15154145 CCCTCTTCTCTGGAGATGC 59 15153984 15154002 AGCTCTGGTACATCTGCTG 59 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000025381,ENSRNOT00000091370 2 2 2 80 17 5604205 5604224 GGGAAATTGGAGTTCAAAGG 57 5604264 5606352 TCTGTAAACCCTTGTATCTACC 57 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047658 ENSRNOT00000042220 1 1 1 60 11 85042371 85042391 GTTTCTTGGGTTCTTGTTGCT 60 85042523 85042542 CTGGGTCATCTGAATGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Hpgd ENSRNOG00000010610 ENSRNOT00000014229 2 1 1 80 16 37460912 37474132 TTCTTCAATAGCAGGGCTC 57 37460850 37460868 CGTGTGAATCCGATTATGC 57 NA Rattus norvegicus 81 Nadsyn1 ENSRNOG00000020736 ENSRNOT00000028175 1 1 1 80 1 216986204 216987891 TTGACAACCAGGTTGTACAG 58 216986143 216986162 ATGGCTCTTTGAAATGCTCC 59 NA Rattus norvegicus 81 Gbp3 ENSRNOG00000036885 ENSRNOT00000040856 1 1 1 80 2 248453716 248455176 GAGTGAAGGCAAGTGAGGT 60 248453654 248453674 CTTTGTCTGACTGCAAGATGG 60 NA Rattus norvegicus 81 Skor2 ENSRNOG00000018006 ENSRNOT00000031993 1 1 1 102 18 73161548 73161567 GCAAAGGATGACAACTTCTC 57 73162143 73175690 TGTGTTCACCTGATCTTTCTC 58 NA Rattus norvegicus 81 Pck2 ENSRNOG00000018536 ENSRNOT00000025260 3 1 1 80 15 34218984 34219709 CCAAGTATGAGAACTGCTGG 58 34219750 34219770 AAGTTACAATCACCGTCTTGC 59 NA Rattus norvegicus 81 Tsnax ENSRNOG00000049784 ENSRNOT00000071827 3 1 1 80 19 57772516 57772534 TTGTGAAACTAAGCCGGGA 59 57772576 57776960 TATCAGGAGCACTTGTGATCC 60 NA Rattus norvegicus 81 Mettl23 ENSRNOG00000000249 ENSRNOT00000000266 1 1 1 80 10 105791969 105791989 CAAAGGACACTTTGTCATTGC 59 105792030 105792122 TGCTTTCAAAGTCTTCTGGT 58 NA Rattus norvegicus 81 Zfp259 ENSRNOG00000018481 ENSRNOT00000025149 3 1 1 80 8 50566278 50566459 AAGACCTTAGAAACGAAGTGC 59 50566499 50566519 CAAGCTTCATGTTGGTCTGAG 60 NA Rattus norvegicus 81 Cyp2c23 ENSRNOG00000013291 ENSRNOT00000017840 2 1 1 80 1 263790549 263790568 AACAAGACGTTCCTCAACCT 60 263790005 263790506 GTTGTACATCTGGCACCAC 59 NA Rattus norvegicus 81 Cyp2c23 ENSRNOG00000013291 ENSRNOT00000017840 3 1 1 80 1 263790543 263790563 GACGTTCCTCAACCTTATGGA 60 263790000 263790503 CAAAGGTTGTACATCTGGCAC 60 NA Rattus norvegicus 81 Mir223 ENSRNOG00000035505 ENSRNOT00000053628 1 1 1 60 X 65367828 65367848 GTTACGCTCCGTGTATTTGAC 60 65367868 65367888 CAAACTGACACTCTACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076540 1 1 5 60 8 39370496 39378905 TTCCAGCATCTCATGGGTG 60 39370454 39370474 CTTGCCATGTTTAGAATGCTC 58 NA DesignRelaxed Rattus norvegicus 81 Olr901 ENSRNOG00000054865 ENSRNOT00000071164 3 1 1 60 7 5325039 5325060 CATGTCCTAGAAATGATGTCCT 58 5325077 5325099 GTACCAGTGTAACTACAAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp52 ENSRNOG00000042826 ENSRNOT00000050119 3 1 1 80 1 61421095 61424170 GGTCTCTGTGGAGAACTACTG 60 61424209 61424230 TCATTACACTGACAAGACTCCT 59 NA Rattus norvegicus 81 Gnpda2 ENSRNOG00000002177 ENSRNOT00000002992 3 1 1 89 14 62638546 62638564 CTGATTTGCAGGCAGAGTG 59 62633515 62638494 CATCTGGACCTATTCCTCCA 58 NA Rattus norvegicus 81 Mpeg1 ENSRNOG00000021084 ENSRNOT00000028622 1 1 1 80 1 228726894 228726912 GGATCCTCAGACCAACCAG 60 228726955 228726975 ATTACCGTCCCATGGATGAC 60 NA Rattus norvegicus 81 Eif2s1 ENSRNOG00000009432 ENSRNOT00000013375 1 1 1 80 6 102064009 102064030 TTGATGACAAGTACAAGAGACC 58 102064067 102067899 TATCCAAGATAGATGGGTCTGAG 59 NA Rattus norvegicus 81 Bcl2l2 ENSRNOG00000015732 ENSRNOT00000020409 2 1 1 163 15 33544400 33544703 CTTCTTCCTGACTCGGCTC 60 33545291 33545311 TACAAAGTCAGCCACTAGAGC 60 NA InUTR Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288,ENSRNOT00000079535,ENSRNOT00000091789 3 3 3 80 8 82099970 82104549 GGAGATGACAGAAACTATGGA 57 82104590 82104609 CTCAGCCTCTCATCATTCAG 58 NA Rattus norvegicus 81 Cenpj ENSRNOG00000022597 ENSRNOT00000065764 2 1 1 80 15 36775739 36775758 TCTTCGAGAAGTACACAGCA 59 36758145 36775696 TGGAACCATTCAGAGCCTG 60 NA Rattus norvegicus 81 Rdh14 ENSRNOG00000039551 ENSRNOT00000006020 3 1 1 80 6 36107753 36111051 AAGAACTGCTACAGGAGGAG 59 36111093 36111112 CAGTCTTCGTATATGGGCAC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 3 3 3 80 17 6189448 6203238 ATTCCCAATTGTGGTCTGC 58 6189386 6189405 GGAAATGGTCACAGACTTCC 59 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828,ENSRNOT00000090912 3 2 2 80 2 104869956 104869976 CTTACCAACTTTGATGATGGC 58 104870016 104872160 CTCGTCCTTGTATTCCTTTCC 59 NA Rattus norvegicus 81 Fam71f1 ENSRNOG00000006132 ENSRNOT00000041207 3 1 1 80 4 56605822 56609843 AGAAACAGTACAGTTCCAGCA 60 56613052 56613070 TGTCTTCACAGGGAGTAGC 59 NA Rattus norvegicus 81 Psmb1 ENSRNOG00000001488 ENSRNOT00000002037 1 1 1 80 1 57472360 57482659 GACTTGATGAAGAAGGAAAGGG 59 57472301 57472319 CTCCGGCTTTGAAAGAGTC 59 NA Rattus norvegicus 81 Ammecr1l ENSRNOG00000016250 ENSRNOT00000061074 1 1 1 80 18 24540707 24540725 CCACCAACACTTACCATCG 59 24540769 24541368 CCTTCTTCCAATACCGGAC 58 NA Rattus norvegicus 81 AABR07054968.1 ENSRNOG00000059891 ENSRNOT00000086626 2 1 1 96 3 175925150 175925168 TTCAGCCAGAATATTGGGC 58 175925228 175926090 GAATCTCAGACTCGTGCAG 58 NA Rattus norvegicus 81 Mapre2 ENSRNOG00000049681 ENSRNOT00000075444 3 1 1 97 18 15764828 15770188 CAACGAACAGGTTCATTCAC 58 15770248 15770266 GGCATAGCAGCTCAATCTC 59 NA Rattus norvegicus 81 Coasy ENSRNOG00000019918 ENSRNOT00000027061 3 1 1 80 10 88995661 88995848 CTGTGGCTAAGGGAAAGAC 58 88995891 88995910 CCTCGTGTACCATATTCTGC 58 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697,ENSRNOT00000057216 1 2 2 80 5 128881964 128885048 GAGATAAAGGTCTCCAGACCA 59 128885088 128885108 CATTCTCATTGCTGAATGGCT 59 NA Rattus norvegicus 81 Olr984 ENSRNOG00000049589 ENSRNOT00000047489 3 1 1 60 7 4292998 4293016 ACTGCCATGTCCTATGACC 59 4292956 4292975 TGATGGTTGTGTAGTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hs2st1 ENSRNOG00000012549 ENSRNOT00000016872 1 1 1 80 2 250471310 250471329 AGACTTCATCATGCTCCTGG 60 250470412 250471272 GATTTCTTTCCTGTACGATAGAGG 59 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051323 ENSRNOT00000047933 1 1 1 60 8 40691925 40691943 TTACCAGGTCACCATGTCC 59 40691967 40691985 CATCACATACACTCCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir363 ENSRNOG00000036273 ENSRNOT00000054396 2 1 1 64 X 140117160 140117178 TGTTATCGGGTGGATCACG 60 140117114 140117133 TGGATACCGTGCAATTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 3 2 2 80 7 107593120 107595634 AGAGTGTATCATGGCTGGC 60 107593058 107593076 AATCTTTGTGTCTGGCAGC 59 NA Rattus norvegicus 81 Epc2 ENSRNOG00000029447 ENSRNOT00000051953 3 1 1 80 3 33726855 33726874 TCACAACACTTACAGTTCCA 57 33726917 33727036 GGTCCATTATGACCCTTCC 57 NA Rattus norvegicus 81 Clec1b ENSRNOG00000057335 ENSRNOT00000082537 3 1 1 80 4 163165367 163165387 GTTTGACGGCTTTAATTCTGC 59 163165429 163166737 GTGTGACTGACATGATCCC 58 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139,ENSRNOT00000041961 2 2 2 80 18 17160107 17175981 CTTGTTGGCTCAAAGTTCC 57 17176023 17176043 ATTGGACTCAGAATACTCCAC 57 NA Rattus norvegicus 81 AABR07030977.1 ENSRNOG00000046767 ENSRNOT00000034630 3 1 1 81 10 111387973 111389218 GAAACATTGGTTCCCTCCTC 59 111389262 111389280 AGTCGGCTGTTTGTTTCTG 59 NA Rattus norvegicus 81 Olr1610 ENSRNOG00000047419 ENSRNOT00000016721 1 1 1 60 15 27076763 27076782 TGCAGGCCTTTACATTACTC 58 27076722 27076741 CCAACAACATCACATAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfikkn1 ENSRNOG00000021578 ENSRNOT00000060156 3 1 1 168 10 15245694 15245712 CTCATCCATCTGACCTCGG 59 15244874 15244892 CATTGGTGCAGCACTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gcm1 ENSRNOG00000007932 ENSRNOT00000010583 3 1 1 80 8 85357584 85357603 GAACTGGACGACTTTGATCC 59 85357646 85363691 CTTCACATTCTGAGGCAGC 59 NA Rattus norvegicus 81 Olr1540 ENSRNOG00000049405 ENSRNOT00000060892 2 1 1 60 11 43330460 43330481 CTCTTCTCTTCATGTATCTGCT 58 43330501 43330520 TCCATCATGTCTTCATCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC114343.2 ENSRNOG00000052100 ENSRNOT00000090835 3 1 1 60 15 28091636 28091655 ACAGCTATGTTCAGTTCCAC 58 28091595 28091615 TTCATGTCCTCTATGCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691196 ENSRNOG00000037027 ENSRNOT00000040763 1 1 1 106 5 166295435 166327430 CAGTCTGGATGTTTACCATGG 59 166294256 166294274 TAACAGGATGACGGTGGTC 59 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000048181 ENSRNOT00000074666 2 1 1 116 2 200572728 200575244 CCACTGTCTGTTCAGAGGG 60 200575323 200575342 CAGATTCTGACAGTCCTGGG 60 NA Rattus norvegicus 81 Fgd5 ENSRNOG00000010213 ENSRNOT00000051022 3 1 1 80 4 123923671 123923689 CCTTTGTCATCGCTCAGGA 60 123923821 123935433 CATGGAAATCCAGGCTTAAGTG 60 NA Rattus norvegicus 81 AABR07055747.1 ENSRNOG00000030254 ENSRNOT00000041966 2 1 1 80 7 8883047 8883065 CTCACATATGTGCTGAGCG 59 8882983 8883004 ATACATGGTCTTCAGGTGGG 59 NA Rattus norvegicus 81 Olr1569 ENSRNOG00000050293 ENSRNOT00000057990 2 1 1 60 11 85313487 85313508 ACCATTTCTTCTGTGATGTTCC 59 85313448 85313468 TAAACCCAAGTGTCCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtsf1 ENSRNOG00000036831 ENSRNOT00000055275 1 1 1 80 7 145037773 145037793 AACCTTGGACAAGAGACTCTG 60 145037247 145037733 TTCCCACAAGTCTTTATCCCA 59 NA Rattus norvegicus 81 Ccdc86 ENSRNOG00000020925 ENSRNOT00000028405 3 1 1 84 1 227001366 227001384 GGAGCTTCCTGTAATTCCG 58 226998671 227001318 AACCATCTGGGAGAACCTC 59 NA Rattus norvegicus 81 Olr1553 ENSRNOG00000046886 ENSRNOT00000060877 3 1 1 60 11 43561647 43561666 TATCATCCACAGTGACACCA 59 43561606 43561625 GAAATCACCTTGCCCTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn5 ENSRNOG00000018048 ENSRNOT00000024367 3 1 1 83 1 192090508 192090527 GTAAGAGTTGGACGTCACTG 58 192090573 192095132 GAATGCAACACCTTTGCTG 58 NA Rattus norvegicus 81 Spata31a5 ENSRNOG00000018202 ENSRNOT00000024504 2 1 1 81 17 2421261 2423288 AATTTCACCAGGAAGCCTC 58 2421198 2421219 CATCGTTCCTACAATGATTCCT 58 NA Rattus norvegicus 81 Tas2r108 ENSRNOG00000012195 ENSRNOT00000016232 1 1 1 60 4 68657644 68657662 TCCATATTCAATCGCTGCC 58 68657686 68657704 GGCTCTCAGATTCTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 2 2 2 80 10 88699367 88699464 CACTTCAGAAACATGTCCCT 58 88699306 88699324 TGTGAACTTCTCTTCCGTG 57 NA Rattus norvegicus 81 Dr1 ENSRNOG00000000070 ENSRNOT00000000080 3 1 1 83 14 1631592 1631610 ATATCTTCCGAAGCCAACG 58 1625631 1631547 ACTTTCTAGTGCTTGGATGAC 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 2 2 2 98 7 12629114 12629584 TCACCGATGTTGACATCGA 59 12629646 12629664 ATTGTAGCAACTGCTGCAG 59 NA Rattus norvegicus 81 Zdhhc9 ENSRNOG00000004581 ENSRNOT00000006484 1 1 1 80 X 135015053 135015071 AACATCGTCTATGTGGCCC 60 135013295 135014089 TTCCAGAACAGTTCCAGGAG 59 NA Rattus norvegicus 81 Zdhhc9 ENSRNOG00000004581 ENSRNOT00000006484 2 1 1 80 X 135011268 135013209 ATGAAGACATCAAAGGATCGTG 59 135011209 135011230 AGCAGTTCTTCACAATGTTTCC 60 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 2 2 2 80 4 24632972 24633374 ATCTCGATCTAGGCCTTCC 58 24633415 24633436 CACTGTCATTTAATCCTTGCAC 58 NA Rattus norvegicus 81 Gtf2h3 ENSRNOG00000001035 ENSRNOT00000001368 2 1 1 80 12 37438676 37438696 GGAAATATGAGCTGTTGACAG 57 37434622 37438634 CCTTGATGTCACTCTTGGT 57 NA Rattus norvegicus 81 AABR07065693.1 ENSRNOG00000045786 ENSRNOT00000070810 1 1 1 116 6 139412500 139412518 AATCCCGACTGAGCATCAG 60 139412596 139412710 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Cfap70 ENSRNOG00000007046 ENSRNOT00000035345 1 1 1 80 15 4302228 4302247 CTGACGAGTTCATTGTTGGG 59 4302287 4304832 GGTTCCTTAATTCTCTGTCCTC 58 NA Rattus norvegicus 81 Lrrc17 ENSRNOG00000012817 ENSRNOT00000017103 2 1 1 81 4 10120120 10120138 GGAAGCAGACTCCACTCTG 60 10113645 10120078 GACTTTCTTCAGCTCTTTCCTC 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 2 1 1 80 9 15321449 15322193 AAGATTCAGGTGGTCTGGC 60 15321387 15321406 GGTTCCATGGTTAACACCTG 59 NA Rattus norvegicus 81 LOC498063 ENSRNOG00000001986 ENSRNOT00000002718 2 1 1 60 11 32469368 32469389 GGGAAGACTTTAGTGATAACGG 59 32469329 32469348 CCAGCATGTAGAATACACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49i3 ENSRNOG00000046046 ENSRNOT00000050861 3 1 1 80 4 162627464 162637357 TTGAATTGTGATTTGGTGGC 58 162627403 162627424 ATCATGTAGACCTGTCATACTG 57 NA Rattus norvegicus 81 Mrpl18 ENSRNOG00000014582 ENSRNOT00000020064 3 1 1 86 1 48034291 48034309 TGGAGCTCTTAGGTGTAGC 59 48034358 48036256 TTACAACTCTCAACCTGTGC 58 NA Rattus norvegicus 81 LOC100911564 ENSRNOG00000048623 ENSRNOT00000072812 2 1 1 80 9 16315881 16315900 AGATGCTGAAATACGCACTG 59 16315943 16316517 TGGCTTCTTCAATGACCCA 59 NA Rattus norvegicus 81 AABR07049728.1 ENSRNOG00000033231 ENSRNOT00000044921 1 1 1 82 5 134444686 134444706 CCAATGTCAGATCTGCTACAC 59 134444750 134444967 TTCTTTCTTTCGGGTGGTG 58 NA Rattus norvegicus 81 Olr820 ENSRNOG00000046810 ENSRNOT00000047359 3 1 1 60 4 72656246 72656265 ATGGGACTATCCTTGCACTG 60 72656286 72656306 AAGAAGTACATGGGAGTGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc11 ENSRNOG00000052062 ENSRNOT00000079161 1 1 1 80 5 128147832 128147853 GAAGGCATTTATCAATGGAAGG 58 128147891 128153408 TCAAAGAAGTACTCAGCTTCTC 58 NA Rattus norvegicus 81 Scarf2 ENSRNOG00000000288 ENSRNOT00000000313 2 1 1 112 11 87728702 87728720 ACTTACGGTGAGGACTGTG 59 87728795 87729245 ACATTACAGTGAGGTCCGTG 60 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 2 1 4 80 4 163757493 163757513 GGATCCAATGTAAACAAGCCT 59 163754532 163757453 GAAGGAACTTCAGTTCATCGT 58 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 3 1 4 80 4 163757491 163757511 ATCCAATGTAAACAAGCCTGC 60 163754530 163757452 CTGAAGGAACTTCAGTTCATCG 59 NA Rattus norvegicus 81 Cct2 ENSRNOG00000021317 ENSRNOT00000037946 2 1 1 80 7 60120359 60120379 CAGGATGATGAAGTTGGTGAC 59 60120204 60120319 AATTAAAGATTCCGCTTCCCG 59 NA Rattus norvegicus 81 Klhl35 ENSRNOG00000017365 ENSRNOT00000023386 3 1 1 83 1 164427557 164428121 TTACGTTTCTGGAGGTCAC 57 164428168 164428186 ATTGAGGCAACCTTGATCC 58 NA Rattus norvegicus 81 Ogn ENSRNOG00000047786 ENSRNOT00000072490 2 1 1 105 17 15456943 15456961 TGATGCTGTACCACCACTG 60 15454289 15456877 TCTTAAGTTAGGCATGTCTGCA 60 NA Rattus norvegicus 81 Fam111a ENSRNOG00000012067 ENSRNOT00000016152 2 1 1 81 1 229013596 229013615 CGCAAATCACAGAAGATCCC 59 229013659 229016611 GCTCTTCTTTGGGAACCTG 59 NA Rattus norvegicus 81 Hip1r ENSRNOG00000001091 ENSRNOT00000034264 2 1 1 80 12 38031184 38031390 ATGAAGGATGACAGGGACC 59 38031122 38031142 CTTAATCTTCTCCAGCTCAGC 59 NA Rattus norvegicus 81 Ppfia2 ENSRNOG00000004353 ENSRNOT00000005862 2 1 1 80 7 49041144 49041164 TCAGAAACATTACCAGCTGGA 60 49041205 49042407 TGATGAAGCAACATCTGTCG 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 1 3 3 80 4 162086213 162086805 GAGGAGCTGAATTTCCTAAAGAG 59 162086844 162086863 AGGGTCTGCTGATGATTCTC 59 NA Rattus norvegicus 81 P4ha1 ENSRNOG00000050655 ENSRNOT00000070897 3 1 1 80 20 28940553 28940574 GTTAATGAAACGTCTGAACACC 58 28940613 28943530 TTAGAGATGAAGCCATCTGAC 57 NA Rattus norvegicus 81 Psmc3ip ENSRNOG00000020022 ENSRNOT00000027159 3 1 1 85 10 89003463 89003482 TCTGGATGCCAGTATCATGG 59 89002951 89003415 ATTCCTTCAGCTCAGCCTC 60 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219,ENSRNOT00000079599 3 2 2 80 7 114504742 114504760 AACTTGGACGCTGTATTGG 58 114499143 114504698 CCAAAGCTGGATTCTCTGG 58 NA Rattus norvegicus 81 LOC687631 ENSRNOG00000047532 ENSRNOT00000071454 2 1 1 110 20 11597188 11597206 CCAGCAGTCTAGCTGTGAG 60 11597280 11597298 GATTCAGAGCAGATGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 3 1 1 67 1 16987937 16989115 AGAGACTTTAACCAAGCAAGTG 59 16987891 16987911 CAGTTTCTTTCTTCAGAGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Mir3546 ENSRNOG00000035583 ENSRNOT00000053706 3 1 1 60 15 33613440 33613458 AGAGACGATAGCTCCTCTG 58 33613478 33613500 TACCTGACTCTCACGTATAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gar1 ENSRNOG00000061146 ENSRNOT00000078074 1 1 1 88 2 235257064 235257082 GAGGAGGATTTGGACGAGG 60 235255607 235257015 CTCTCCTAATAAGACGACTCGT 59 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 1 2 2 80 7 117059485 117059503 GACTCTTGGCATTTGCTCC 59 117059547 117059642 GGCAATGGAATCTCTGCAC 59 NA Rattus norvegicus 81 Ccdc62 ENSRNOG00000038002 ENSRNOT00000057814 3 1 1 81 12 38086523 38089375 AGTTAGAAGGTGAGCTGCA 59 38086460 38086479 ATCTGATTGGACTCAAGCGT 60 NA Rattus norvegicus 81 Mt4 ENSRNOG00000019004 ENSRNOT00000025694 3 1 1 62 19 11340570 11341811 TGTATGTCTGGAGGGATCTG 58 11340527 11340545 TTTACAGCTGCAGGTTGTG 59 NA DesignRelaxed Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 2 2 2 80 10 88513968 88513986 GCAGCATGTCGTAGTTTCC 59 88510975 88513926 ATTGGCATTCTTGAACTCCTG 59 NA Rattus norvegicus 81 Tssc4 ENSRNOG00000032677 ENSRNOT00000046669 1 1 1 227 1 216254999 216255018 GTTATTGAAGCGTGTACGGA 58 216255456 216255475 ATAAGACCTGACATCCGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619,ENSRNOT00000021152 2 2 2 80 9 79494507 79523277 ACCAAAGACTCAGAGGAGTG 59 79494446 79494464 CCTGTTCCTCACTTCCCTG 60 NA Rattus norvegicus 81 Suclg1 ENSRNOG00000005587 ENSRNOT00000007624 3 1 1 80 4 101202711 101203955 GTGTATTGGCATTGGAGGT 58 101203999 101204017 GTAGCTGGATCCTTCAGGA 58 NA Rattus norvegicus 81 Parp10 ENSRNOG00000004361 ENSRNOT00000006376 1 1 1 80 7 117297508 117297526 GAGTTCCAAGATGTGGTGC 59 117292438 117297465 ACGTTCTACTCGAACAATGC 59 NA Rattus norvegicus 81 Kcnb2 ENSRNOG00000028991 ENSRNOT00000045460 1 1 1 109 5 2982181 2982594 GCATGTAAGATCCTGGCCA 60 2982090 2982108 GGTTGCCCAAATTCATCGT 59 NA Rattus norvegicus 81 Kcnb2 ENSRNOG00000028991 ENSRNOT00000045460 3 1 1 110 5 2982181 2982594 GCATGTAAGATCCTGGCCA 60 2982089 2982107 GGGTTGCCCAAATTCATCG 60 NA Rattus norvegicus 81 Mob3c ENSRNOG00000037620 ENSRNOT00000067566 3 1 1 82 5 134684340 134686443 CTACACGTGTTGGAGTTCC 58 134686488 134686507 GACAAAGACTCGGAAGAGTC 58 NA Rattus norvegicus 81 Car4 ENSRNOG00000002916 ENSRNOT00000003908 3 1 1 80 10 72279547 72279565 GAAACGAGGTAAACGAGGG 58 72279607 72279737 TCACTGTGGAGTTTGTAAAGG 58 NA Rattus norvegicus 81 Mir138-2 ENSRNOG00000035643 ENSRNOT00000053766 3 1 1 63 19 11149802 11149820 GCTGGTGTTGTGAATCAGG 59 11149757 11149775 CTGGTGTCGTGAAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132c ENSRNOG00000000963 ENSRNOT00000048474 1 1 1 80 12 33016047 33016065 AAGGAGACATAGTCACCGC 59 32914642 33016005 TCTTTACCTTGGCTCTTAGGA 58 NA Rattus norvegicus 81 LOC100363287 ENSRNOG00000029293 ENSRNOT00000049858 1 1 1 60 11 28724727 28724747 CCTGAATTGTGGAGTCTATGG 58 28724767 28724787 TGGATAGCAATATCTGGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyr61 ENSRNOG00000014350 ENSRNOT00000019501 2 1 1 81 2 251531181 251531540 ATCTGCAGAGCTCAGTCAG 59 251531118 251531136 AGTTGGGTTGGAAGCTCTC 60 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911,ENSRNOT00000076166 2 2 3 60 X 71166374 71166395 CTGGTTACTGAATACCATGGGA 60 71165998 71166016 CAGTCAGCCCTTTAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr157 ENSRNOG00000017252 ENSRNOT00000023170 2 1 1 60 1 169616542 169616563 ATTCTACCATCCTCACTGACAC 60 169616581 169616602 CCTCTCATCATAGCTACTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl10b ENSRNOG00000010302 ENSRNOT00000013687 3 1 1 146 10 70629260 70629278 GAGTCCATCTCCAGAGTCC 59 70629387 70630117 CCACCTAGACACGTTTAAGC 59 NA InUTR Rattus norvegicus 81 Rnf115 ENSRNOG00000000098 ENSRNOT00000000110 1 1 1 80 2 198914958 198917612 CTCAGGAGCAAGTCAATACG 59 198917655 198917673 GTAACTGCCGGACTTTCTC 58 NA Rattus norvegicus 81 LOC100910416 ENSRNOG00000049183 ENSRNOT00000074056 2 1 1 60 2 46204383 46204404 TTGTGGTCTTTGTTCTAGTTGG 59 46204425 46204443 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 2 1 1 60 10 14021314 14021914 CTAGAGCCTTCGGTGAGAC 59 14021272 14021291 GCAAAGATGATTTGCTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 2 2 2 82 5 150472357 150472375 TGTGGATCCCAGGATTTGG 59 150472420 150473333 CGCCATTCTCTGTTTGTGAG 60 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118,ENSRNOT00000090751 3 2 2 80 4 27218566 27222493 AGAATACAAGAGCAGGGCA 59 27218504 27218523 TTCAGTCAGTAAGCTCCTCC 59 NA Rattus norvegicus 81 Coq7 ENSRNOG00000017012 ENSRNOT00000022988 1 1 1 80 1 188178474 188178492 TACAACAACCAGATCCGCA 59 188176864 188178432 TCGAAACTGCTTAATGACCTG 59 NA Rattus norvegicus 81 Slc35f3 ENSRNOG00000049456 ENSRNOT00000071655 1 1 1 80 19 59186928 59186948 TTCTTCCCATTGTACTACGCA 60 59186988 59254043 ACAGCATTCCCTGTATCTCTG 60 NA Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 3 1 1 208 18 27657925 27657943 AGGAGATGATGCTGCTGAG 59 27658115 27658805 AAAGGACTCTGTGGTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102553962 ENSRNOG00000046480 ENSRNOT00000074435 2 1 1 84 1 198831328 198831346 AGGAAGAGACCGAACTGTG 59 198830758 198831280 TGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 Sh2d4a ENSRNOG00000013541 ENSRNOT00000018543 2 1 1 80 16 23085275 23085709 GGTGGAATATCACAAGGAGGA 59 23085215 23085233 GGCTTGTCTTGTTGACCAC 59 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 1 1 1 81 7 13108643 13108664 GAATCCTTCCCAGAAGAATCTC 58 13108377 13108604 GTTCCATTTGTAGCCTATAGCA 58 NA Rattus norvegicus 81 Polr1a ENSRNOG00000009545 ENSRNOT00000013587 2 1 1 80 4 99875510 99875529 CAAGAAAGCACTGAGGAGAG 58 99875570 99875999 TCAACTTTCTGCAATACCTCC 58 NA Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 2 1 1 80 X 71202736 71202755 TCGTCGCCACTTATATCCAG 60 71202798 71203450 TCCGCTTTACATCTTCCGT 59 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151,ENSRNOT00000080340 1 2 2 83 5 147131571 147131591 CTTGATGAAGGTGTTTATGGG 57 147123389 147131526 AGATGGTTTCTTCTGCAGG 57 NA Rattus norvegicus 81 Atp1a1 ENSRNOG00000030019 ENSRNOT00000040430 1 1 1 80 2 204011882 204011900 TCTCCATGATTGACCCTCC 59 204010904 204011840 CCATGATGACCTTAATCCCAG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053,ENSRNOT00000091209 1 3 3 83 19 62150202 62150223 ACCATCAACTATGACGAAAGAC 59 62146876 62150161 GAAGAAACAACCATCTTCAGGT 59 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000089454 2 1 2 60 6 139636927 139636945 GCAAATGGACAGTCTGAGG 59 139636621 139636903 TGATGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Vom2r52 ENSRNOG00000033494 ENSRNOT00000042249 2 1 1 80 4 156611119 156618816 CTCATCTATGGAAGCTTCATCC 59 156611060 156611078 CCTTGTTCATGACAGCCTC 59 NA Rattus norvegicus 81 AABR07065699.5 ENSRNOG00000058753 ENSRNOT00000075467 1 1 1 130 6 139523667 139523685 AATCCCGACTGAGCATCAG 60 139523779 139524168 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000085954 1 1 3 62 1 199060238 199060257 CATACATCTGTGCTGACTGC 59 198895476 198895494 TGACTTGGTGCTGAGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Pdcd2 ENSRNOG00000001490 ENSRNOT00000002040 2 1 1 80 1 57517546 57517568 GCAAGGAACATCAGACATTAGAC 60 57516988 57517511 GAACCATATGGTCTAAATGGTCTG 59 NA Rattus norvegicus 81 Zbtb3 ENSRNOG00000019461 ENSRNOT00000026321 1 1 1 85 1 224998304 224998613 GTTGGAGGACTCACTGGAG 59 224998662 224998680 CTGTGTTCTGGGAACTCCA 59 NA InUTR Rattus norvegicus 81 AABR07065651.4 ENSRNOG00000050972 ENSRNOT00000075376 2 1 1 119 6 138679322 138679340 CTCTCAAATCCCGACTGAG 57 138679127 138679239 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 AABR07065651.4 ENSRNOG00000050972 ENSRNOT00000075376 3 1 1 119 6 138679316 138679334 AATCCCGACTGAGCATCAG 60 138679121 138679237 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401,ENSRNOT00000090831 3 2 2 81 12 37518089 37518110 ATGAGAGGAATGAGCTTAAGTC 58 37518150 37519658 TCCTCTTCTATTTCTTCGCTC 57 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 3 3 7 93 20 4095964 4095982 GAAGATGAGTGGAGTCGGG 60 4096039 4096453 TCCAGACTGTCCTTTCTGG 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000080590,ENSRNOT00000060327 2 3 7 81 20 4087728 4087746 TGTTGCTAACAGTGCTGAG 58 4091565 4091586 CACTCGGATTTATACTGTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 3 3 3 80 X 71184463 71184657 CCTGATAGGGTAAATGACATCG 59 71184698 71184716 TCCTAACCACTCTGCACTC 59 NA Rattus norvegicus 81 Tgfbi ENSRNOG00000012216 ENSRNOT00000016390 3 1 1 80 17 8408312 8409058 TCCCAGATTCAGCCAAGAC 59 8408250 8408268 CAGCTTGTCTGAGGAGGTC 60 NA Rattus norvegicus 81 Fbln7 ENSRNOG00000017550 ENSRNOT00000023708 3 1 1 81 3 121423546 121433346 CCGCTGTAGAGATACCAGTG 60 121433390 121433408 TCTGTAGTGGTGGACACCT 60 NA Rattus norvegicus 81 Klrh1 ENSRNOG00000059182 ENSRNOT00000079813 3 1 1 80 4 163603047 163603065 GGATGAAAGTGAGGCATCC 58 163599240 163603006 TGAATAAAGTTCTGCTCCTCTC 58 NA Rattus norvegicus 81 RGD1560685 ENSRNOG00000013839 ENSRNOT00000018492 1 1 1 60 19 13287528 13287546 AAGCTCATTGAGGCAGAGG 60 13287568 13287588 TGTATGTGACTGTGATGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir674 ENSRNOG00000040429 ENSRNOT00000062182 3 1 1 62 3 108864470 108864488 TTGCACTGAGATGGGAGTG 60 108864514 108864532 AGCCTTGTTCTGAGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 1 2 2 80 7 144316261 144316281 GGAGTTAGAGGATGACATCCA 59 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 2 1 18 72 1 43475842 43475860 GGCCCTCTACTCTATCGTG 59 43475890 43527500 CTAGCTTACAATCACATACATGACC 60 NA DesignNoJunction Rattus norvegicus 81 Thap11 ENSRNOG00000019109 ENSRNOT00000025815 2 1 1 60 19 37826316 37826334 TCGGGAGATGATGTGAAGC 60 37826358 37826376 CTTCAGCAGCTGCAAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 3 2 2 89 10 53575897 53575915 CCTGAATGAGGAAGAAGGC 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Pp2d1 ENSRNOG00000004719 ENSRNOT00000006325 1 1 1 80 14 72958062 72958080 GTTAACAGCTCTCCCTTCC 58 72950484 72958018 TGCTTGTACATTTCCAGCA 58 NA Rattus norvegicus 81 Ndufs7 ENSRNOG00000024568 ENSRNOT00000039728 1 1 1 97 7 12318929 12319572 ACATCTATGTGCCAGGCTG 60 12318850 12318869 GATCTTCAGCTTCTGTTCGC 59 NA Rattus norvegicus 81 Ttc9c ENSRNOG00000019464 ENSRNOT00000026376 3 1 1 80 1 225006347 225010548 AACCTAAAGACGCCAATGTC 59 225006286 225006306 GCTGTTTCTCTTTCCTATGGT 58 NA Rattus norvegicus 81 Klhl3 ENSRNOG00000019533 ENSRNOT00000034877 3 1 1 80 17 6993052 6993071 TTAAGTCTGGACCAGGTGTG 59 6993112 7014403 CACGGCTTCAAATACCTTCTC 59 NA Rattus norvegicus 81 AABR07063855.1 ENSRNOG00000011040 ENSRNOT00000014668 3 1 1 126 6 52824060 52824078 GACTCCCTGGAAATGAGCT 59 52823950 52823970 TCTTCTCAGTAGGGCAAGC 59 NA Rattus norvegicus 81 Cdc42ep1 ENSRNOG00000008517 ENSRNOT00000011270 3 1 1 152 7 120068070 120068088 CTTTGATAGCACTCCGGCT 60 120069571 120069589 TCTCGGTCTTGAGAATGGT 58 NA DesignNoJunction Rattus norvegicus 81 RGD1561777 ENSRNOG00000050425 ENSRNOT00000072256 2 1 1 80 20 45043474 45043493 CTGAACCGATCTTCCAAAGC 59 45043412 45043431 GAAGACAGAAACCCACAGC 59 NA Rattus norvegicus 81 Ccnf ENSRNOG00000007483 ENSRNOT00000064392 2 1 1 80 10 13610193 13610212 TGAAGAATCTGCTCATCAGG 57 13609815 13610150 GGGTCAGACATATCCACCT 58 NA Rattus norvegicus 81 Olr446 ENSRNOG00000046122 ENSRNOT00000071646 1 1 1 60 3 73003942 73003960 TGTGGTGATCCCTATGCTG 59 73003983 73004002 ACCTTTCACTTCCTTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm3b ENSRNOG00000050200 ENSRNOT00000070930 3 1 1 80 18 27622931 27624182 GCTCACGATGAAGAAGTTCTC 59 27624224 27624242 TTTGCCGTCATGAATCCTC 58 NA Rattus norvegicus 81 Copz1 ENSRNOG00000036835 ENSRNOT00000065270 2 1 1 82 7 144917806 144918407 GACGGATAGTGAAATCGCC 59 144918450 144918471 TGCCGATCACATAGAAATAGAG 58 NA Rattus norvegicus 81 Trove2 ENSRNOG00000003434 ENSRNOT00000004701 2 1 1 80 13 60556591 60557226 AGTCTAAAGAGGTATGGAAGGC 59 60556532 60556550 TGGCAGTCATCTTTCCCAG 60 NA Rattus norvegicus 81 Heatr6 ENSRNOG00000002542 ENSRNOT00000003492 1 1 1 80 10 71056607 71056626 GCCTCTTAATCAGAACCACC 58 71056667 71058182 TCCACAATCACCTGTAATCTG 58 NA Rattus norvegicus 81 Myo1d ENSRNOG00000003276 ENSRNOT00000004609 1 1 1 80 10 67974043 67974063 AGTTGCTAATGAGCTGAAACG 59 67965587 67974005 CTAAATCGATTCACCTTTCGGAC 60 NA Rattus norvegicus 81 AABR07062183.2 ENSRNOG00000054265 ENSRNOT00000078121 1 1 1 80 4 164011496 164011514 TCAGATGTCAACAAGCCTG 58 164007788 164011452 GCTGAAGGAACTTCAGCTC 59 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000027344 2 1 2 80 1 215536573 215536594 CATCTTCAACTTCGTCTACCTC 59 215522199 215536533 TTCTTGTCCCGAACTTTGAG 58 NA Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 2 1 1 60 5 107416450 107416468 TATCCCTGTCCTGCATGAG 59 107416408 107416428 TGACTCCTTTGATGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 3 1 1 60 5 107416412 107416430 GCCTCTTCACATCAAAGGA 58 107416370 107416388 CAGAATGAGTCTAGCAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mylip ENSRNOG00000017579 ENSRNOT00000024021 2 1 1 80 17 19690261 19690279 AACACTGCCCAATACAGCT 60 19688945 19690217 ATGCTTCCCAACAATGCTG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000047281 ENSRNOT00000064924 3 1 1 80 X 15402019 15402038 TATTGCATGTTCAACCACCT 58 15402081 15402210 GTCCACGATGAGAATCCTC 57 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 1 2 2 80 4 155665670 155665689 CATTCGACACAACCTTTCCC 60 155665732 155667187 CAATAGGAGCCCTTCCCAG 60 NA Rattus norvegicus 81 Arl4a ENSRNOG00000004282 ENSRNOT00000005800 1 1 1 60 6 59949267 59949285 CTTCTGGGATGTAGGTGGT 58 59949225 59949245 GCATCGGGTATATGACTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng6 ENSRNOG00000057852 ENSRNOT00000081837 2 1 1 85 1 64313788 64315419 CAAGAAAGAGGTAAACCTGGC 59 64313723 64313741 CCATGATGACACAGAGGCA 60 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000012020 ENSRNOT00000016714 3 1 1 80 5 134370192 134372530 CTGTTGCCGTAACCTAGCT 60 134370130 134370149 GGCACATAACTGTGAAGGAC 59 NA Rattus norvegicus 81 Drc7 ENSRNOG00000025860 ENSRNOT00000031064 3 1 1 80 19 10366242 10366821 GCATCAGCTACGAGGTAGAG 60 10366181 10366203 CATTCTTCAGGTGAATCATGGTC 60 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 3 1 1 61 11 71755647 71756062 GGTTCACCTCAATGGAACTG 59 71755605 71755623 CAAGCAAATGAGGACCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Susd3 ENSRNOG00000016525 ENSRNOT00000032997 1 1 1 60 17 15823140 15823158 GTACAGAAGAGTGAGCAGC 58 15824508 15824526 CTCTCAGCTGGTACCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Cyc1 ENSRNOG00000012457 ENSRNOT00000017067 2 1 1 89 7 117411507 117411525 AAGTAGCCAAGGATGTTGC 58 117411577 117411678 TCAACAACATCTTGAGTCCC 58 NA Rattus norvegicus 81 Rn60_1_0913.3 ENSRNOG00000051350 ENSRNOT00000076449 1 1 1 60 1 90123307 90123325 GCAACTTTATGAAGCCCAC 57 90123265 90123283 ACCACCCTGTTACTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 2 1 1 84 14 43830756 43831585 AAACAGGCAGCATAAGAGG 58 43831633 43831651 GAATACCCTCCCAGGTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 3 2 2 80 10 15490655 15491082 TGAGGGCTAACAAGTCAGAG 59 15491124 15491143 TGAAGCTGAGGAAAGGTGAG 60 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 3 2 2 80 6 106500907 106500926 CTACGTCTTCCCAATCTCAG 58 106500969 106502152 CAGAAGTAAGGAGCCTGGA 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259,ENSRNOT00000083594 2 2 2 80 11 33964984 33965665 TCTTCTAGTTGAGGCTCTGG 59 33965708 33965726 AGATATTCATGGTGGCGCT 59 NA Rattus norvegicus 81 Skint4 ENSRNOG00000042047 ENSRNOT00000041421 2 1 1 80 5 132008917 132014551 CACTGAGTTCAGAACAATTCAC 58 132014590 132014610 AACTCAGGTCAACATTTCCAC 59 NA Rattus norvegicus 81 Bmp6 ENSRNOG00000013717 ENSRNOT00000018359 1 1 1 80 17 26955286 26955391 TGTACAGACCTTGGTCCAC 59 26955224 26955243 GAGATGGCATTCAGTTTGGT 59 NA Rattus norvegicus 81 Dgcr6 ENSRNOG00000001880 ENSRNOT00000002574 3 1 1 89 11 87080937 87080955 CTTCTGGAGATCCAGCACC 60 87078094 87080885 CAGAGTCTGTCTGAGCACTC 60 NA Rattus norvegicus 81 LOC679576 ENSRNOG00000014865 ENSRNOT00000019925 2 1 1 60 10 58784677 58784695 CCTTAGGAGCAAGTCCTCC 59 58784719 58784737 AGTCGATGTCTCCTTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam71b ENSRNOG00000021425 ENSRNOT00000031580 3 1 1 80 10 31509164 31509183 ACAGTTGCATCAGTAACCCA 60 31509224 31510352 CATGGATTTCTGAGACGAGTG 59 NA Rattus norvegicus 81 AABR07027088.1 ENSRNOG00000046068 ENSRNOT00000075373 1 1 1 80 17 14091560 14091580 TGTGTCTATGGACTAGAGCTG 59 14087377 14091518 CCGAGATGTTGCAACTCTG 59 NA Rattus norvegicus 81 Stx18 ENSRNOG00000006139 ENSRNOT00000008410 1 1 1 80 14 77428719 77440807 GTACATTAATGCCTACAGCCAC 60 77428660 77428678 GCATCCTGGTCTATCTGGT 59 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366,ENSRNOT00000091316 1 2 2 80 9 114864934 114867283 TCCTACCCAGTTATGTCCAC 59 114864873 114864891 GCAGACACAAATTCCACCT 58 NA Rattus norvegicus 81 AABR07027098.1 ENSRNOG00000048372 ENSRNOT00000071112 3 1 1 80 17 14372590 14373810 CATCACAGAGGATTTGAAGATGAG 60 14372533 14372553 CTAAGAAACGGTAGCCTACCT 59 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 1 2 2 94 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579103 12579951 ACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Fahd2a ENSRNOG00000013974 ENSRNOT00000018922 3 1 1 80 3 120007224 120007242 CTTCAGCAAGTTCTCCAGC 59 120005486 120007182 TCCCAGTCAACTTCCTTACTC 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054,ENSRNOT00000085535,ENSRNOT00000017568 2 3 3 80 16 49543724 49544915 TGGTATTGTAGGTGCTGTG 57 49543662 49543680 TTGAGGTTACAGTCAGCAC 57 NA Rattus norvegicus 81 RT1-A2 ENSRNOG00000030712 ENSRNOT00000038660 3 1 1 84 20 5377256 5377368 CAGAGATGGGAGCCTTCTC 59 5377416 5377434 GAGTTCCAATGATGGCTCC 58 NA Rattus norvegicus 81 Cspg5 ENSRNOG00000020833 ENSRNOT00000028278 1 1 1 80 8 118339103 118339123 ATGATGACTGTGTTCTTTGCC 59 118339165 118341207 CCGGAATTTGTTGGTCCTC 59 NA Rattus norvegicus 81 RGD1565117 ENSRNOG00000033161 ENSRNOT00000045687 2 1 1 60 7 70445510 70445531 ATATCTGAAGCAAGTGTCTTCG 59 70445552 70445570 AGTGCAGCTTGACAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem167a ENSRNOG00000016686 ENSRNOT00000022377 3 1 1 104 2 18937510 18937528 GTACGTGTGCTTATGTGCG 60 18940039 18943502 TCTTGCGTTCACCAATTCG 59 NA Rattus norvegicus 81 Bbs10 ENSRNOG00000026913 ENSRNOT00000039096 2 1 1 101 7 54031549 54031925 TTAGCCAGGATGATAGTGGC 59 54031987 54032007 AAGTCCTCTGAGTAAATGGCA 59 NA Rattus norvegicus 81 Rpl6 ENSRNOG00000025936 ENSRNOT00000034951 2 1 1 82 12 40878172 40879277 GCTACTTGTGACTGGACCT 59 40878108 40878126 TTGTAGAGGTGGCGATGAC 60 NA Rattus norvegicus 81 Uqcrh ENSRNOG00000012550 ENSRNOT00000016751 3 1 1 93 5 134921965 134922688 AGAGGAAGAATTAGTGGACCC 59 134921892 134921910 ACACGACTCTAGTCGTTCC 59 NA Rattus norvegicus 81 Pigk ENSRNOG00000042359 ENSRNOT00000014725 1 1 1 80 2 257920023 257920044 TACCGACATGTTGCAAATACTC 59 257920081 257937509 CATAAGGACAATGTGACTGTCTG 60 NA Rattus norvegicus 81 Tmem70 ENSRNOG00000006608 ENSRNOT00000008680 2 1 1 86 5 2034280 2034301 GCCTCTTACATACACAAGTTGG 59 2021185 2034236 ATTTCACACCAAATACTGTCCG 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354,ENSRNOT00000064751 3 3 3 82 11 34071530 34073121 CAGTTAAAGGCAAACAACATGG 59 34073162 34073182 TCTTGCTTATTATGAGTCGGC 58 NA Rattus norvegicus 81 Rph3a ENSRNOG00000001368 ENSRNOT00000001844 3 1 1 80 12 41125235 41126748 GTAAGAAGAATGTCTGCACCA 58 41126790 41126808 GGCAGATCTTACAGAGCCA 59 NA Rattus norvegicus 81 Mcm4 ENSRNOG00000001833 ENSRNOT00000002510 2 1 1 80 11 89513629 89514111 TACCCACAGGAGGTTATACCA 60 89514148 89514171 TTCTAAGATGGAGTCAGGATAACG 60 NA Rattus norvegicus 81 Fam129a ENSRNOG00000002403 ENSRNOT00000003320 2 1 1 80 13 69072506 69077873 AGATGAAGTCCAGATCCTGAG 59 69077915 69077933 TTCAGTTTAGGCAGCAGGT 59 NA Rattus norvegicus 81 Tonsl ENSRNOG00000014703 ENSRNOT00000019754 1 1 1 80 7 117700346 117700900 GTCAGAGTCTCAAGTATGTATTGG 59 117700289 117700308 CACCTTGAAGATCATTGCCC 59 NA Rattus norvegicus 81 LOC100361349 ENSRNOG00000009168 ENSRNOT00000012135 1 1 1 60 2 192481132 192481150 CCAGAGTCTTGTCCTCCTC 59 192481090 192481108 TCTGTTGGTATGAGGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361349 ENSRNOG00000009168 ENSRNOT00000012135 3 1 1 60 2 192481078 192481096 CAACAGAAATGCCCTCCTG 59 192481036 192481054 TCTTTGGTGGACACTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000040513,ENSRNOT00000073905 1 2 2 198 7 120140940 120140958 TTTCCTTCGCCAAGTTGAC 59 120144581 120144599 TGGAACATGTAAGGGCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643,ENSRNOT00000078799 1 2 2 80 4 11308646 11308666 CGAGTTTCTACAGGTGAAGAG 58 11227279 11308605 ACAATGACATCACCTGTCTC 58 NA Rattus norvegicus 81 Brap ENSRNOG00000046497 ENSRNOT00000072481 1 1 1 80 12 40383722 40383746 GTTCTATCCTGGAGACCAGC 60 40383661 40383679 ATGTTGATCTGCCCTTCCT 59 NA Rattus norvegicus 81 Brap ENSRNOG00000046497 ENSRNOT00000072481 3 1 1 80 12 40401068 40404246 GATGACACAACGTGTCCTG 59 40401006 40401024 AACACCACACTCGAAACAC 59 NA Rattus norvegicus 81 Eef1b2 ENSRNOG00000024186 ENSRNOT00000034740 3 1 1 80 9 69955809 69955828 GACATGACGAAACTTGAGGA 58 69955868 69955986 CACTGGAACCAATTTAGAGGAG 59 NA Rattus norvegicus 81 Jakmip1 ENSRNOG00000004998 ENSRNOT00000006771 2 1 1 81 14 78431595 78431613 GAGACGTCCTACAACACAG 58 78430191 78431550 CTTCTCTGGTTGTGGTCTC 58 NA Rattus norvegicus 81 Coch ENSRNOG00000005286 ENSRNOT00000007365 3 1 1 80 6 72371605 72371626 TTATTGTCACAGATGGACAGTC 58 72371666 72372814 AGAAGATGGTGATACCTGCA 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 1 2 2 80 1 133353524 133372418 AGAAAGAGGAAGAGAAGGAGTC 59 133353465 133353486 GGACAGTGGAAACAATATCCTG 59 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 1 2 2 80 11 9990348 10020683 CGAGCGAATCACTATCCGA 60 10020725 10020745 CCAACACAAACATACTTGCCA 60 NA Rattus norvegicus 81 Mbd6 ENSRNOG00000006209 ENSRNOT00000008854 1 1 1 86 7 70576050 70576279 TCTTCTCCTGGAGAGGGAG 59 70575982 70576000 AGGAACTCGACAAGAAGGG 59 NA Rattus norvegicus 81 RGD1304624 ENSRNOG00000006986 ENSRNOT00000009180 3 1 1 83 6 75961818 75963322 CGCCTTTGGGATTTATTTCTC 58 75961755 75961773 TTCCTGACAGATCAGGGAG 58 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482,ENSRNOT00000002477,ENSRNOT00000002478 1 3 3 80 11 88863820 88870032 TTCTGAGCTATGTGGTGGT 58 88870073 88870094 AGTGGATCAACAGATTCTAAGG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 3 1 5 168 20 5416724 5416836 CACTTTCCCAGAGATGGGA 59 5416966 5417160 TAGACTCCTCCTTTCCTACCT 59 NA Rattus norvegicus 81 Skil ENSRNOG00000009899 ENSRNOT00000013191 1 1 1 80 2 115868153 115868527 CAGTTGCAGATGGAAGTGG 59 115868091 115868111 TTTCTGTAGATTCTGCTGCTC 58 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298,ENSRNOT00000060218 1 2 2 80 17 27571520 27571541 GGAGTTTGTTTGCAAGTATGGA 60 27560364 27571481 ACACAGCAAATGTCACATCTC 59 NA Rattus norvegicus 81 Styk1 ENSRNOG00000010347 ENSRNOT00000013833 3 1 1 80 4 165533428 165533446 CACCATCCCTCTCAAGTGG 60 165531180 165533385 CCAAAGGACCAAACATCTCC 59 NA Rattus norvegicus 81 Atp1b2 ENSRNOG00000011227 ENSRNOT00000015076 3 1 1 80 10 56208835 56208954 TCTTGGAGCCTTACAACGA 59 56208773 56208794 TATCGGGTTGCTCATAATATCG 58 NA Rattus norvegicus 81 Wdr5b ENSRNOG00000002253 ENSRNOT00000003068 3 1 1 60 11 67647174 67647193 ACTTTATGGTCACAGTCTGG 57 67647133 67647154 CAGACGACTAGAATCTGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 3 3 3 80 13 71112462 71112480 CGCACAAATCAGACTCCTG 59 71112522 71113431 CTGTGGAGAGTCTCTTGAGAG 59 NA Rattus norvegicus 81 AABR07009978.1 ENSRNOG00000038552 ENSRNOT00000058810 1 1 1 75 2 119139955 119139973 AAGGTCACCTGGAAAGAGC 60 119139898 119139916 CTTTCCGAAGACTGTCGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac1l ENSRNOG00000013695 ENSRNOT00000018423 1 1 1 60 9 84894422 84894440 TATCGTCCTCACAAAGCCA 59 84894380 84894398 TGATGTAGTCGTCGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myadm ENSRNOG00000053450 ENSRNOT00000081980 2 1 1 134 1 64441131 64444181 GTTAAGGAAGCAGCCATGC 60 64441015 64441033 GGATACTAGCTGCAGGAGG 59 NA InUTR Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 1 2 2 80 3 61449557 61464037 CAGGACAAGAGATTCGTCAG 58 61449496 61449515 GAGGAGGACCCTGATTAGAG 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139,ENSRNOT00000015119 3 2 2 110 2 148609931 148609950 ACCTCTGTATTCAGCATAGC 57 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Olr881 ENSRNOG00000043125 ENSRNOT00000065917 2 1 1 60 7 3804483 3804501 TGTGATGTGTCTCCCTTCC 59 3804441 3804459 CCATCTGCTCAATGACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rec114 ENSRNOG00000009332 ENSRNOT00000012381 3 1 1 81 8 63459316 63507514 ACAGACACTACTGGAAGGG 58 63459253 63459272 GAACAGAAGACAGTCCATGC 59 NA Rattus norvegicus 81 Rps15al2 ENSRNOG00000032877 ENSRNOT00000046642 2 1 1 60 11 84094695 84094713 GGAAGATCGTTGTGAACCT 58 84094734 84094755 AATCTAGGGCTTATAACTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pllp ENSRNOG00000016558 ENSRNOT00000022277 2 1 1 83 19 10748545 10748566 TGTCTTCTTCATCATCTACCTG 57 10748608 10750782 ACAAAGAAGACCAGTAACACC 58 NA Rattus norvegicus 81 Mir130b ENSRNOG00000035541 ENSRNOT00000053664 2 1 1 60 11 88129775 88129793 CTTGCTGGACACTCTTTCC 59 88129817 88129835 CATCATTGCACTGCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 1 1 1 80 4 38696852 38696873 AGAGAATGTAAACTACCATGCC 58 38693376 38696811 ATTGCAAGGCAAAGAACAC 57 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 3 3 3 80 10 74467290 74467309 GATGTTCCAGCAAGTTCACC 60 74467349 74471254 ACCAATTCACTGGTAAAGTCTG 59 NA Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 1 1 1 83 7 70327780 70327798 AAGAAGGTGATCGAACTGG 57 70321459 70321478 ATCAGTGATGGTAACATCCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 3 1 1 84 7 70327780 70327799 CAAGAAGGTGATCGAACTGG 59 70321459 70321478 ATCAGTGATGGTAACATCCC 57 NA DesignNoJunction Rattus norvegicus 81 Cbx6 ENSRNOG00000046955 ENSRNOT00000068033 2 1 1 81 7 121053103 121057339 TTTCCTCCTAAAGCCAAGC 58 121053040 121053058 GATGTCTTTCTTGAGCCGG 59 NA Rattus norvegicus 81 Tor3a ENSRNOG00000004307 ENSRNOT00000005726 3 1 1 80 13 74270909 74276169 CTTCACAGGCTTAGAATCAGAC 59 74270850 74270869 TTCACTGCTTCTAGGACCAG 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000085724 3 1 2 84 20 4024436 4024454 AGCTTGGAGACGTCTACAG 59 4024502 4025447 TATTCAGACTGAGCCACCC 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000092127 3 1 2 61 20 4020430 4020448 CTCATGAGGCCAGATTCCT 59 4020472 4022407 CAGGTTGAAGATGAACCTGG 59 NA DesignRelaxed Rattus norvegicus 81 Ccdc71l ENSRNOG00000039207 ENSRNOT00000060006 1 1 1 80 6 51662319 51662337 GGAGAAGGTGGTGTACTCG 60 51662381 51662399 ATGAAGAGCTTGAAGGCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc71l ENSRNOG00000039207 ENSRNOT00000060006 3 1 1 81 6 51662318 51662336 AGGAGAAGGTGGTGTACTC 58 51662381 51662399 ATGAAGAGCTTGAAGGCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 2 1 1 153 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064213 97064231 CCTTTGACTCGTCTTTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Mab21l3 ENSRNOG00000016044 ENSRNOT00000021487 2 1 1 80 2 204245663 204253668 CTGAGTAAGATGGACCTGAGG 59 204245603 204245621 TGTAGTCAGAAGGTGGACG 59 NA Rattus norvegicus 81 Polr2f ENSRNOG00000011214 ENSRNOT00000015009 3 1 1 96 7 120389724 120389914 CATGAAGGAACTCAAGGCC 59 120389974 120389992 GATGATGAGCTCATCCACG 58 NA Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 1 1 1 80 13 67646336 67646357 ACAACTCAGAAAGCAGAATCAC 59 67646395 67646524 AACTTCATCCTTCAACACTCTC 58 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923,ENSRNOT00000049857 2 2 2 93 3 122699737 122699755 AAGAGAAGCGAGTCCTTGG 59 122698203 122699681 GCAATGCCAGTATCTTTGGG 60 NA Rattus norvegicus 81 Gabra6 ENSRNOG00000003569 ENSRNOT00000004877 2 1 1 80 10 27858818 27859119 AAGTTTGGGAGCTATGCCT 59 27858756 27858777 TGGGACCTCTACTGAATAAAGC 60 NA Rattus norvegicus 81 Dtd2 ENSRNOG00000006727 ENSRNOT00000009020 3 1 1 91 6 72785241 72786709 GGAGATTCGGAGAGGATTGG 60 72781634 72785189 CGTTTAACAGCGTATTGACCA 59 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 1 1 1 74 8 40160154 40160465 AAGAACCTGGGAAACAGAG 57 40160098 40160116 AGGACTGGTATGACTGACG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 3 2 2 80 X 15099610 15099630 TCAACTTCAACACTGATGAGC 59 15099672 15099967 CCTTGACAACAACCACCTC 59 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000039050 ENSRNOT00000040023 3 1 1 80 3 25211805 25212045 CAACATTGGTGAAGTGCTC 57 25211743 25211761 TATGCTCAGATTTGCTGCT 57 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 3 2 2 94 10 56768862 56769030 AGAAAGGCTTTACGCACTG 59 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 Gdi1 ENSRNOG00000056870 ENSRNOT00000089814 2 1 1 80 X 156405005 156405435 AGGCCTTGGCTTCTAATCTG 60 156404944 156404965 CATCAAAGTTTGCCACAAACAC 60 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000050171 ENSRNOT00000048054 3 1 1 60 7 13530778 13530797 TCTCACCTTTCCATTGTCTC 57 13530737 13530755 CAGAACTGACGTACACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmm ENSRNOG00000030530 ENSRNOT00000011086 1 1 1 82 7 12894511 12894530 CTTCTACATCAAGCAAGCCA 58 12894353 12894466 GTCCATCCAGCTTAAGCAG 58 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 1 2 2 80 11 17549473 17553319 CAAGTATGAACCAGAGATTCATCC 59 17553357 17553376 TTCTCATGGGTGTCTTCAGG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449,ENSRNOT00000086093 2 2 2 82 8 87211946 87211968 CTGAATACCAGAGACATAACCAC 59 87212010 87213469 TTGACAATAAGCCGTGCTG 59 NA Rattus norvegicus 81 Gemin4 ENSRNOG00000055236 ENSRNOT00000087689 1 1 1 60 10 64372141 64375782 GGACCCTTGAATATCTGTGAG 58 64372101 64372119 GTTCAGCCATCAAGAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Gemin4 ENSRNOG00000055236 ENSRNOT00000087689 2 1 1 61 10 64372141 64375783 AGGACCCTTGAATATCTGTGAG 59 64372101 64372119 GTTCAGCCATCAAGAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1370 ENSRNOG00000046347 ENSRNOT00000073401 1 1 1 60 10 12521357 12521375 AACCCGTTCATCTACAGCC 60 12521315 12521335 TGAGCACTTTCCTTAAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam163a ENSRNOG00000024825 ENSRNOT00000036392 1 1 1 80 13 73746060 73746081 GGAATCCTAGCTACAGTGATCC 60 73745041 73746022 CTTCTTGCAGCAGTAATACTGG 60 NA Rattus norvegicus 81 C1qtnf5 ENSRNOG00000007613 ENSRNOT00000010127 3 1 1 138 8 48443819 48443837 AAGCTAGGAGTCTGTCAGC 59 48443939 48444202 GTAGTCTGTAGGCCCTTCC 59 NA InUTR Rattus norvegicus 81 Sdsl ENSRNOG00000001391 ENSRNOT00000001882 1 1 1 81 12 41644519 41644537 GTAAGGGCACAAGAACTGG 59 41644581 41645220 CATTGCCTTCCCATATCAGG 59 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 1 1 1 80 6 1352516 1352535 CTCCTAGTCAACTGTACCGA 58 1345860 1352473 CCACATATACCTCTGCCCA 59 NA Rattus norvegicus 81 Olr1383 ENSRNOG00000047402 ENSRNOT00000044667 3 1 1 60 10 34300334 34300354 CTTACTCCTATGCTCAATCCC 58 34300294 34300313 GTGCTCCTATCACATCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000081829 2 1 2 65 1 81399607 81399625 CAAGCCTTGGATGAGATGC 59 81399654 81399672 TTACTGATTGTGCTCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 3 2 2 80 8 6905790 6906790 GGAAATTGAGGATGATGCGG 60 6906829 6906851 GTTCTTCCCTCTTCAAAGTAGGA 60 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 3 2 2 82 4 68640022 68640511 CATACCAAATGGGTGACGTC 59 68640555 68640574 ATAAGCCACATCTCTGAGGC 60 NA Rattus norvegicus 81 Hipk1 ENSRNOG00000019333 ENSRNOT00000056079 3 1 1 80 2 206234721 206234739 ACAACAGCAGTCTAGTTCC 57 206234002 206234679 AGAACTTCCAGAGAAGATGTG 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 1 3 6 81 12 41306150 41307123 TCTAAGGTTGTGAAGGGTGG 59 41306088 41306106 TAAGGAACACCACCAGGTC 59 NA Rattus norvegicus 81 Prickle3 ENSRNOG00000022417 ENSRNOT00000013758 1 1 1 80 X 15685478 15685587 GTGTGATGAGATCATCTTCTCC 59 15685419 15685437 TCGAAACAGCAGAAGTGAC 58 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 1 2 2 86 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA InUTR Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000013569 2 1 2 80 4 61924606 61939863 TCTAGAAGGTATCTCAGACGAG 58 61939904 61939922 TTCTCATCCAACTCCAGCA 59 NA Rattus norvegicus 81 Rpap2 ENSRNOG00000023484 ENSRNOT00000002815 2 1 1 80 14 3174897 3174915 GGGAGTTCTACAGAGGACG 59 3170713 3174853 CACGCTGAAGCTCATTCTC 59 NA Rattus norvegicus 81 Rpap2 ENSRNOG00000023484 ENSRNOT00000002815 3 1 1 80 14 3175765 3183106 GAAGAAAGGACAAAGTGGCT 58 3175704 3175722 TAAGCATCGACATCTGCTG 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 3 2 2 81 11 27026480 27026502 CATGGTTTCAACTATTCCCTTCC 60 27024746 27026441 ACCATTTGTACAAGCAAGCTG 60 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 3 1 1 80 2 204330490 204330508 CAATGGCAGTGAGATCCAC 59 204314761 204330449 TTGGCAATTAAGAACCACTCAG 59 NA Rattus norvegicus 81 Gfra4 ENSRNOG00000021241 ENSRNOT00000047947 2 1 1 138 3 123580204 123580222 ACTACCTGGACAACGTGAG 59 123579343 123579361 TCAAAGGCTTGTATGGCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 2 1 1 80 6 143065503 143065604 AGTAACTGCAGGAGTCCAC 59 143065441 143065460 ATCTTCACTGAAGAGCCAGG 60 NA Rattus norvegicus 81 Msh3 ENSRNOG00000013673 ENSRNOT00000018449 2 1 1 80 2 21930063 21931543 AACCAGCAGAGAAGGTGAC 60 21930001 21930022 TCTTTGCTTTCTTGTTAGTGGG 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000071482 2 1 2 80 13 73709035 73718246 CAGAAATCGAGGTGTGACG 59 73718288 73718308 TTTATCTGGACCCAGTCACAG 60 NA InUTR Rattus norvegicus 81 Rn60_20_0141.1 ENSRNOG00000001226 ENSRNOT00000037297 1 1 1 60 20 11928608 11928626 GGAGAGTGCCGAGAAAGAG 60 11928566 11928589 CTTATAGTCAATCAGTTCTTCGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559629 ENSRNOG00000031317 ENSRNOT00000049500 2 1 1 60 6 69950763 69950783 CTTGATTATTGGCTATGCCAG 57 69950805 69950823 AATGGGATAGGAGGAGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683038 ENSRNOG00000033014 ENSRNOT00000046081 1 1 1 87 16 12537800 12537948 CAGACAAGAGTGAGAATGATTCTG 60 12537736 12537754 AGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Tpgs1 ENSRNOG00000008296 ENSRNOT00000011010 2 1 1 69 7 12917636 12917654 CCAATTTCCCAGACAGTGG 59 12917585 12917603 AAATCCTCCTCGCTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp347 ENSRNOG00000031216 ENSRNOT00000044241 2 1 1 60 7 9974872 9974894 CCCTATGTATGTAATCAGTGTGG 59 9974834 9974855 CATGTACTTGAAGATTACAGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr135 ENSRNOG00000004499 ENSRNOT00000005933 3 1 1 60 6 94817263 94817287 CCTAACATTTCTATGTTCCTAGGTC 59 94817227 94817249 CCATGTTTCTAGTCCTATATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552,ENSRNOT00000088705 1 2 2 80 8 117535934 117536103 ATCACTAGAGATGTCAGAACGA 59 117536142 117536162 GTGATTATTCGCTCTCCATCC 59 NA Rattus norvegicus 81 Sh3tc1 ENSRNOG00000007993 ENSRNOT00000010784 3 1 1 83 14 80219426 80222604 TCTGGAGAGTCAGTTACAGG 58 80222650 80222668 TAGATGACACATCGCACCT 59 NA Rattus norvegicus 81 Tex14 ENSRNOG00000023698 ENSRNOT00000009077 2 1 1 80 10 74786856 74786877 AAGAAGATAGACTCTCCTCAGC 59 74786917 74791663 AGAACTATTTGGGCTTCCCT 59 NA Rattus norvegicus 81 Mybpc3 ENSRNOG00000012307 ENSRNOT00000016652 1 1 1 80 3 79946984 79947002 GCTAGTGATGGTGGGTCAG 60 79947045 79947149 CCATCCTTCAGCCATTTGAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000046048 ENSRNOT00000075027 3 1 1 80 16 18450946 18450965 AGACTCTGTCTGGAAACAGG 59 18451008 18453296 CATCAGAATCTGCTGTGGC 59 NA Rattus norvegicus 81 Sarm1 ENSRNOG00000010244 ENSRNOT00000013639 2 1 1 80 10 65757408 65757689 GAACTTTCGGGATCAGCAG 59 65757346 65757365 TTCATGCCTAGGTCTGTCTG 59 NA Rattus norvegicus 81 Tmem102 ENSRNOG00000015057 ENSRNOT00000020578 3 1 1 87 10 56412388 56412407 CAGGAGAGTTGGAGTGAAGG 60 56412219 56412340 GGTGAACTAGACCGAGTAGAG 59 NA Rattus norvegicus 81 Dera ENSRNOG00000007570 ENSRNOT00000009998 1 1 1 85 4 171821552 171825295 GAAACAAGGTAGGCTTTAAGC 58 171825341 171825360 CAGTTCCTCCTTTACCAGAG 57 NA Rattus norvegicus 81 AABR07013095.1 ENSRNOG00000049260 ENSRNOT00000071934 1 1 1 60 2 222935930 222935951 GATGTGATATCCAGATGAACCA 58 222935891 222935912 ACTCGTTCTCCAATAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029591.1 ENSRNOG00000057510 ENSRNOT00000086358 1 1 1 80 10 36580192 36580214 CTTTCCTTCGATGACTGCT 58 36580130 36580148 GATGATCTCCGTTCCAGAC 57 NA Rattus norvegicus 81 Olr1362 ENSRNOG00000047553 ENSRNOT00000060995 1 1 1 60 10 12369783 12369802 GAACCCTTTCATCTACAGCC 58 12369742 12369761 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir336 ENSRNOG00000035459 ENSRNOT00000053582 3 1 1 60 10 35349768 35349790 CTCTCACCCTTCCATATCTAGTC 59 35349809 35349828 ACATCCCTTCATGGAATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golm1 ENSRNOG00000018400 ENSRNOT00000037597 1 1 1 80 17 5403237 5403256 GAAGAGCGGATAGAAGAGGT 59 5403296 5405389 ATAGAAATACTGCTGTCGTTGG 59 NA Rattus norvegicus 81 Tmem256 ENSRNOG00000037540 ENSRNOT00000056870 2 1 1 115 10 56446438 56446718 AAGGAGCTCTTTGACAAGG 57 56446893 56446912 GTAGTTCCAGAAGCTAGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Sncg ENSRNOG00000058006 ENSRNOT00000087150 1 1 1 223 16 10725386 10725689 CAAAGTGTAACCTCGGTGG 59 10722397 10722415 TAGTCTCCTCCACTCTTGG 57 NA DesignNoJunction Rattus norvegicus 81 Synj2bp ENSRNOG00000006399 ENSRNOT00000009122 1 1 1 80 6 105231240 105240468 AGATCCTCTCGGTAAATGGC 59 105231179 105231200 CATATCCTGCATTACGGAAGAG 59 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542,ENSRNOT00000040187 3 2 2 80 2 136997590 136998113 CCGAGTTAACAGTTCTGCA 58 136998157 136998175 TCTCCCTGTTCACTGTCTC 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 3 5 5 80 11 27864721 27864740 GACATTTGGATGTACGTGCT 59 27859104 27864678 CTCGTAGGGTGTGAACCTC 60 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403,ENSRNOT00000070958 3 2 2 98 13 84068321 84068340 CTGCAGAAAGACAAGATGGC 60 84069167 84070250 GCTGAGACCCTGGTAAAGG 60 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 2 2 2 80 2 122504605 122507153 CATGACAGAGTTAGGATGTGAC 59 122504546 122504566 CCTGGTTCTTTCAATTCTTGC 58 NA Rattus norvegicus 81 Mpv17 ENSRNOG00000049430 ENSRNOT00000034207 2 1 1 84 6 26595905 26595923 CAATGGAATGTCAGCCCAG 59 26596185 26596419 AGGCCAGAGATAGTAGTTGG 58 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 3 3 3 80 19 15224945 15229650 TCTCGAAGTCACAGAGATGC 60 15229692 15229711 CCTCATGGCTGATACAAAGC 59 NA Rattus norvegicus 81 Gprc5a ENSRNOG00000008412 ENSRNOT00000011134 1 1 1 80 4 168846201 168846221 AAACCTCAACTCATGAAGCAG 59 168846263 168850439 CTCCTCAAGACCTTGGGTG 60 NA Rattus norvegicus 81 Aqp7 ENSRNOG00000009686 ENSRNOT00000012975 2 1 1 80 5 57360783 57369166 TGTCTTGATGGTGTTTGGC 59 57360721 57360741 AAGTTGACACCAAGATAGCTG 58 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788,ENSRNOT00000040482 1 3 3 80 3 48295622 48305557 GACCATTACAGGAACTCAACAG 59 48295563 48295582 TGCTGTACCGTGAATAAGGA 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 1 2 2 80 1 178658522 178658541 GCTTCACGTTAATTGCTCTC 58 178658582 178714763 CATCTATGATCTGGAAGGTGC 58 NA Rattus norvegicus 81 Nudt10 ENSRNOG00000046053 ENSRNOT00000048236 2 1 1 86 X 17172096 17172114 CTGGAGAAACTGAAGCTGG 58 17172164 17213427 CTCTGTTCATTAGGGCTCG 58 NA InUTR Rattus norvegicus 81 Cmya5 ENSRNOG00000023803 ENSRNOT00000073710 1 1 1 80 2 22657607 22657626 TCTTCTATGTGAGAGCCACC 59 22656396 22657565 ATCTAGTTCCTCTGGTGGAG 58 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090,ENSRNOT00000058689 2 2 2 80 13 84591533 84591552 TGGTTCAAGCAGAAGATCAG 58 84591594 84591789 GTGAGAATGGACATTGTCCT 58 NA Rattus norvegicus 81 Mlxip ENSRNOG00000001255 ENSRNOT00000001690 1 1 1 80 12 38573050 38573619 GTGGCTGCATTAAAGAACC 57 38572988 38573006 AGTGTTAAAGCCCATCCTG 57 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000007428 3 1 3 80 7 14572685 14572703 CCAGCTATAGACCTCCTGC 59 14572746 14572876 ACAGATGTTCCCTTTAGGGA 58 NA Rattus norvegicus 81 Rn60_1_1734.1 ENSRNOG00000036817 ENSRNOT00000031043 2 1 1 60 1 167162227 167162247 ACACAGGTTAACTCTGAAGAC 58 167162187 167162206 TTTCCCTAATAGCTTCCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpz ENSRNOG00000008947 ENSRNOT00000012109 1 1 1 80 14 80413415 80415752 CATGAACTGATGGAGCCTG 58 80415794 80415814 GTAGATGAGTATTTCCCGTCC 58 NA Rattus norvegicus 81 AC126960.1 ENSRNOG00000039860 ENSRNOT00000031118 3 1 1 80 4 26253506 26254142 ACTTCTATCGTAACCTGCAC 58 26253445 26253463 TCTCCTGCTTCAGTTTGAC 57 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076240,ENSRNOT00000055235 1 2 3 98 1 167309270 167320523 ATGATATGGTGATGGCATGC 59 167320584 167320602 TACGTGAGAGCAGTCAGAG 59 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076240,ENSRNOT00000055235 3 2 3 101 1 167309267 167320520 AGGATGATATGGTGATGGCA 59 167320584 167320602 TACGTGAGAGCAGTCAGAG 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000076356 1 1 2 80 16 81231350 81233294 CAAGATATCAAGAGTGCATGAG 57 81231291 81231311 ACTTACTCTTAACACAGGTGG 57 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000076356 3 1 2 80 16 81231350 81233295 CCAAGATATCAAGAGTGCATGAG 59 81231292 81231312 CTTACTCTTAACACAGGTGGC 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 1 2 2 80 10 25907242 25907260 AAGCTACTACTGCCTTCCA 58 25906665 25907201 GATCGTTTCTCCTTTCAAATGG 58 NA Rattus norvegicus 81 Trpv6 ENSRNOG00000014714 ENSRNOT00000020616 1 1 1 80 4 70922409 70922773 CATTCCATGTCATCATTGTCAC 58 70922350 70922368 CCTCTCCATCTGAGTTGGT 58 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 3 2 2 80 2 207375836 207375860 GAGATAATTTATAGACGGTCACAGC 60 207375896 207377930 TACATTGGTATCTCGCCTCAG 60 NA Rattus norvegicus 81 RGD1559848 ENSRNOG00000027798 ENSRNOT00000021014 3 1 1 60 6 103718487 103718507 TGGAGAATACGTCTACAAGGG 59 103718447 103718466 CTCATTCTGGACTGTTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.1 ENSRNOG00000039439 ENSRNOT00000060436 1 1 1 83 5 58967822 58967862 AGAGTCCTCGAAACCATCG 59 58967909 58967927 CTTGGTGGTGATCTCGGAG 60 NA Rattus norvegicus 81 Nsg1 ENSRNOG00000005700 ENSRNOT00000008030 2 1 1 80 14 77383986 77394835 GAGAGGTTTAAGGTCTCCG 57 77394878 77394897 CACTTTGTAGACAACCAGGA 58 NA Rattus norvegicus 81 Nsg1 ENSRNOG00000005700 ENSRNOT00000008030 3 1 1 80 14 77383987 77394836 AGAGGTTTAAGGTCTCCGT 58 77394879 77394898 ACACTTTGTAGACAACCAGG 58 NA Rattus norvegicus 81 Olfml3 ENSRNOG00000019211 ENSRNOT00000026075 2 1 1 83 2 206221243 206221262 GATGAGAAGGTGACTGGAGG 60 206220686 206221198 GTAGCTACAGTCTGTCACCA 59 NA Rattus norvegicus 81 Mirlet7d ENSRNOG00000035594 ENSRNOT00000053717 1 1 1 60 17 16419988 16420008 TAGGAAGAGGTAGTAGGTTGC 58 16420030 16420048 AGTTAACTCCTTGTGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ict1 ENSRNOG00000032780 ENSRNOT00000045875 1 1 1 81 10 103961976 103962235 CTTCAGAGACTCAGGATTGAG 58 103962277 103962296 TCCTGCTTGTCTTTATGGTC 58 NA Rattus norvegicus 81 Ankrd66 ENSRNOG00000046426 ENSRNOT00000075670 2 1 1 85 9 20004366 20004384 GAAAGGTCTCTGTGACCCA 59 20004433 20008464 CCATTTGCCCTCTGATTGC 60 NA Rattus norvegicus 81 Mrpl39 ENSRNOG00000047563 ENSRNOT00000074032 1 1 1 80 11 24187577 24187598 CAAAGTGGACTTCATAGAGGAG 58 24186604 24187538 TCAATGAAGTCACCGATTCTG 59 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792,ENSRNOT00000010549 1 2 2 86 7 13014387 13014662 GTGTCTGAAAGACAGGACG 58 13014712 13014730 CAATACAGGCAGAACTGCA 58 NA Rattus norvegicus 81 Wdr24 ENSRNOG00000019713 ENSRNOT00000026697 2 1 1 80 10 15194512 15194608 CATCACCAATGAGGATAACGA 58 15194650 15194668 TCCTCTCCTTCTACGTCAC 58 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 1 1 2 80 2 118989113 118989135 TTAAGAACGATATGCACGCC 59 118989052 118989070 CTACGTAGTTCCCAGACGG 59 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 3 2 2 80 1 83104083 83108846 TTCCTTCATGCAGTTTCGC 59 83108890 83108908 CCACATAGCATGACCACAG 58 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000079249 1 1 3 95 1 66253717 66253735 GAGGAGAGCAGAAGACAGG 59 66253637 66253658 AAACCTTGGAACGTGACCT 60 NA Rattus norvegicus 81 Ubxn2b ENSRNOG00000009137 ENSRNOT00000012551 1 1 1 80 5 19285496 19290143 GACTTACAGTTGGCCTTGG 59 19290185 19290205 TGTAGCTGTAGATCTGTCAGG 59 NA Rattus norvegicus 81 Olr1416 ENSRNOG00000046967 ENSRNOT00000052223 2 1 1 60 10 43946947 43946966 TGTGAGGTTCTTACTGTGAC 57 43946906 43946925 TGAAGGTCTCATAGAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365588 ENSRNOG00000053283 ENSRNOT00000080171 2 1 1 145 10 87516946 87516964 GAACTGCCGTGTTAGATGG 59 87516819 87516837 GTCCACAGTAGGATGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa7 ENSRNOG00000000860 ENSRNOT00000001153 3 1 1 80 20 5011079 5011387 ACCTCCAGGGAAATGTAGC 59 5011431 5011449 CTGTCCTTGTTGATGCCTC 59 NA Rattus norvegicus 81 Trex2 ENSRNOG00000056983 ENSRNOT00000081973 3 1 1 60 X 157375052 157375070 ACATGGATCCTGAGATTGC 57 157375094 157375112 TTCTCCAAGGAAGATCGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2rl3 ENSRNOG00000048186 ENSRNOT00000072664 1 1 1 67 16 18819728 18819747 GCATCTACGACGATGTAGAG 58 18819380 18819398 AAGTTCTACTGTGGGACGC 60 NA DesignNoJunction Rattus norvegicus 81 Krtap3-3l1 ENSRNOG00000049383 ENSRNOT00000045189 3 1 1 195 10 87475748 87475766 CCTCTGACAAGTCCTGTCG 60 87475571 87475590 ACATAGGTGGTGAGGTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707,ENSRNOT00000073355 3 2 2 80 1 128628354 128637029 GTTTGCACAGTTGTATCAAGG 58 128637068 128637089 GTCTCAGTATATTCCAAAGCCT 58 NA Rattus norvegicus 81 RGD1305807 ENSRNOG00000010497 ENSRNOT00000064113 2 1 1 80 5 61448040 61451928 GCCTCTACCTCTTCATCGT 59 61451972 61451990 GCAGCTTGTCTTCAAACAC 58 NA Rattus norvegicus 81 Abcc2 ENSRNOG00000046727 ENSRNOT00000070861 1 1 1 80 1 263580313 263581861 TTCTCAGTGGAATCAAGATCCT 59 263581902 263581920 CTTTCTTCCGAATGCCCTG 59 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 3 2 2 80 5 8998039 8998057 TGGTGTCTGCTTCATAGGA 58 8990596 8997995 CTTCTGCTCTCCAAAGCTG 59 NA Rattus norvegicus 81 LOC100911713 ENSRNOG00000050660 ENSRNOT00000075612 3 1 1 100 9 20280302 20280320 CAAGATGCTGCAATTCGTG 58 20280382 20281058 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 Mir148b ENSRNOG00000035525 ENSRNOT00000053648 1 1 1 60 7 144912056 144912079 GAGGTGAAGTTCTGTTATACACTC 59 144912097 144912116 AAGTTCTGTGATGCACTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 1 2 2 80 14 7234675 7235265 GAACACAAAGGATCTTCTGGAG 59 7234616 7234636 CTTTCCTGGCTTAGAGTTACC 58 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 2 2 2 80 14 7230173 7230739 TTGCTGTCTTATGCTTGCG 59 7230111 7230131 AATACTTCATCACCGTGTCCT 59 NA Rattus norvegicus 81 LOC102547118 ENSRNOG00000039305 ENSRNOT00000060213 1 1 1 122 X 17252371 17252825 TCAGGTCCCAAGGTAAAGC 59 17252267 17252285 TGGAGAAGGTTTCAGGCTC 59 NA Rattus norvegicus 81 Tmem38b ENSRNOG00000028063 ENSRNOT00000034570 3 1 1 81 5 70665514 70668814 AAGATGTCCTTCCCTTGCA 59 70668858 70668877 TTGATATTGCCAGATGCCTG 58 NA Rattus norvegicus 81 Mzf1 ENSRNOG00000027550 ENSRNOT00000058563 3 1 1 80 1 65523527 65523947 TGATGGAGAATCCAGAGCTC 59 65523989 65524008 CCACCTTAGGTAGGAGAGTG 59 NA Rattus norvegicus 81 Dyx1c1 ENSRNOG00000056654 ENSRNOT00000085959 2 1 1 80 8 79648430 79648448 TGTATTTGAATCGGGCTGC 59 79648488 79650726 ATTCTAGTGCCTTAGAAGAGTCC 60 NA Rattus norvegicus 81 Dyx1c1 ENSRNOG00000056654 ENSRNOT00000085959 3 1 1 80 8 79640228 79640246 AAAGAGGCTACAGAAGCGA 59 79640286 79641083 CTCTTCAATCTTCATCATCTCGC 60 NA Rattus norvegicus 81 Pus7l ENSRNOG00000022570 ENSRNOT00000029097 2 1 1 83 7 135795544 135799545 AGTGTATACAGCTTTCACCC 57 135795480 135795498 ATAACGCCAAGTTGGATGG 58 NA Rattus norvegicus 81 Fau ENSRNOG00000046393 ENSRNOT00000048726 3 1 1 61 6 86921935 86921954 TGGGAGGTAAAGTTCATGGT 59 86921978 86921996 CTTGGGAGTCTGACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aloxe3 ENSRNOG00000007454 ENSRNOT00000010141 2 1 1 80 10 55713962 55713980 TCTGTGGTTCACTTTCCCT 59 55714024 55715243 GATGGTTCTTGCTGTTCCT 58 NA Rattus norvegicus 81 Akr1a1 ENSRNOG00000016727 ENSRNOT00000023072 3 1 1 82 5 135483766 135484204 AGATCTTGCTCAGATGGCA 59 135483702 135483720 AATGTTCTGAAGGATGCGG 58 NA Rattus norvegicus 81 Acsl5 ENSRNOG00000016265 ENSRNOT00000022126 3 1 1 80 1 276276013 276276769 CAGTGGAACTACAGGTGAC 58 276276813 276276831 AATTTGAGGAAAGCAGCCA 58 NA Rattus norvegicus 81 Cic ENSRNOG00000056118 ENSRNOT00000091357 2 1 1 80 1 82156103 82156123 CTAGTGAAGACATGACCAGTG 58 82156165 82156597 TGTCATCAGCAATGACGTC 58 NA Rattus norvegicus 81 Sod1 ENSRNOG00000002115 ENSRNOT00000002885 1 1 1 80 11 30367646 30367665 TGTCCATTGAAGATCGTGTG 58 30367708 30368674 CTTGTTTCTCGTGGACCAC 59 NA Rattus norvegicus 81 Sod1 ENSRNOG00000002115 ENSRNOT00000002885 2 1 1 81 11 30367645 30367665 GTGTCCATTGAAGATCGTGTG 60 30367708 30368674 CTTGTTTCTCGTGGACCAC 59 NA Rattus norvegicus 81 B4galt2 ENSRNOG00000019609 ENSRNOT00000026591 3 1 1 82 5 136711867 136714947 CTATGTCATCAACCAGCATGG 59 136711805 136711824 CCTCTTTCAGTGCCTCTAGG 60 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 2 2 2 80 7 2705964 2705982 CATTGAATCAGCTGTTGCC 58 2706024 2706241 TTCTGAAGATTTCCATCTCCC 58 NA Rattus norvegicus 81 Ndufaf5 ENSRNOG00000004784 ENSRNOT00000006412 1 1 1 80 3 133247015 133247034 TTTCTCCTTTCACTGCTGTC 58 133247075 133251342 CATCAGTATCCACAGTCAGAG 58 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000072502 3 1 2 81 3 154045022 154045040 GGAATGCTGCATTTACTGG 57 154045085 154045353 CCTGAACACCTCACTTCTC 58 NA Rattus norvegicus 81 AABR07049783.1 ENSRNOG00000049373 ENSRNOT00000072631 2 1 1 60 5 137709459 137709479 CTGGCTCTGTTCTACAATGTC 59 137709499 137709519 TACGAAGGCTGTAGATGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shcbp1l ENSRNOG00000002691 ENSRNOT00000003661 2 1 1 80 13 70876056 70877809 CATCACTATAAAGGGAGTTGGA 57 70877849 70877868 TTGGATACCACAAAGCTGTC 58 NA Rattus norvegicus 81 Gns ENSRNOG00000047350 ENSRNOT00000064349 2 1 1 80 7 63479645 63479663 CAGTACCAGAAGGCTTTCC 58 63479707 63481757 TAACCAGTGCTTGTTCGTC 58 NA Rattus norvegicus 81 Acaa1a ENSRNOG00000032908 ENSRNOT00000045049 1 1 1 103 8 128035689 128035745 TCCCTAGAAGAAAGGTGAACC 59 128035810 128035828 CTTCAGCTCATTGAGCAGC 59 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 3 2 2 80 8 40004702 40007173 GACCAGCCTTAGATACCGTC 60 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 St6galnac6 ENSRNOG00000046984 ENSRNOT00000074401 3 1 1 80 3 11630855 11633728 GAGTAGCAACAAAGAGCAGC 60 11633770 11633789 TTGGAGCTGTAGAGGATGAG 59 NA Rattus norvegicus 81 Timp3 ENSRNOG00000004303 ENSRNOT00000005746 1 1 1 80 7 23548530 23553800 GCAAATGAAGATGTACCGAG 57 23548469 23548487 CCACAGAGACTTTCAGAGG 57 NA Rattus norvegicus 81 Tmem101 ENSRNOG00000054581 ENSRNOT00000081539 2 1 1 80 10 90095475 90095493 CTCCAGCTAGCCATTAGCA 59 90094415 90095434 ATACATACGGACCTTTAGCCAG 60 NA Rattus norvegicus 81 Tmem101 ENSRNOG00000054581 ENSRNOT00000081539 3 1 1 80 10 90095474 90095492 TCCAGCTAGCCATTAGCAC 60 90094414 90095433 AATACATACGGACCTTTAGCCA 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 3 2 2 93 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493119 14493139 TTGAGCGTCATCAAAGATGTG 59 NA Rattus norvegicus 81 RGD1565283 ENSRNOG00000002972 ENSRNOT00000003979 2 1 1 117 13 88644675 88644693 TATGTCCTCACTTGCGACC 60 88647607 88647627 GCATACGAAGTAGCTGTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Scimp ENSRNOG00000037409 ENSRNOT00000056608 3 1 1 136 10 57422785 57424729 CAGCTTAGACAAGGCAGGA 59 57419509 57419527 AAAGGTGAACTCCTGGGTG 60 NA Rattus norvegicus 81 AABR07060287.1 ENSRNOG00000049746 ENSRNOT00000043147 2 1 1 85 4 66091872 66091982 TACATCCCACAAAGCAAAGG 59 66092029 66092048 GCAGTGTTGTTCCAAATCTC 58 NA Rattus norvegicus 81 Lrrc4b ENSRNOG00000019418 ENSRNOT00000026259 1 1 1 80 1 100450583 100466560 GAACAGCATTCAGGTGATCC 59 100466603 100466621 ACCAGATTCTTGCTCAGCT 59 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000060181 1 1 2 85 7 117951209 117951227 GTCTGGATTCCGGTCAGAG 60 117951275 117953477 AAAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Dopey1 ENSRNOG00000022847 ENSRNOT00000014783 3 1 1 80 8 94203474 94203849 AGAGACCTTCAGGATGTGAC 59 94203891 94203910 CCATGTTGTCTGTTCCAGAG 59 NA Rattus norvegicus 81 Kdelc2 ENSRNOG00000007177 ENSRNOT00000009497 1 1 1 80 8 57978806 57978825 AAGGGCAGTTAACTGCTAGG 60 57978866 57980272 CCGCATATTTCTGCAGTACTC 59 NA Rattus norvegicus 81 Rad54l2 ENSRNOG00000013570 ENSRNOT00000018475 1 1 1 80 8 115409179 115409412 GTTACATATGAATGGGCCAAGG 60 115409120 115409141 AAGAAGTACCATCTTGGGAGAG 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 3 2 2 81 13 86424530 86424549 TGTTATCAGCCAGACAGGAG 59 86391999 86424486 TCCATTAGCACTGATGCCC 60 NA Rattus norvegicus 81 Szt2 ENSRNOG00000028659 ENSRNOT00000039235 2 1 1 80 5 137194873 137194891 CTGCTTGTCTGTCACTCTG 58 137194706 137194829 CACGAAGAACTGAAGCCTC 59 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 1 2 2 80 7 15247728 15248595 AGGAAGCCTGAGAACTCTG 59 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 2 2 3 95 2 210547143 210550356 CCTTCTTCGACATGGATGG 58 210547066 210547084 AATCATGTGGCTACAGTGC 58 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928,ENSRNOT00000084470 2 2 2 80 9 40986734 40986755 CAATTTCAGCCTCTTTGAAGTG 59 40986796 40986907 AACCTGTACTGCTCCTCTG 59 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 1 2 2 85 10 91792311 91792329 AATGCCAGTTCCAGTTCAG 58 91790872 91792262 TGTCTCCTTGAAGCCTCTC 59 NA Rattus norvegicus 81 Arhgap18 ENSRNOG00000011245 ENSRNOT00000015547 3 1 1 80 1 19270903 19270922 CATTGAAGAAGGCAGTCTGG 59 19269188 19270863 TCTTGGCAAAGATTCTTGACTC 59 NA Rattus norvegicus 81 Sorbs2 ENSRNOG00000013391 ENSRNOT00000029628 3 1 1 80 16 49679799 49681737 CAATGCAGGTCTGTACAACTC 59 49679739 49679759 TTGGAAAGAGGTCTGTAGGTC 59 NA Rattus norvegicus 81 Cfc1 ENSRNOG00000042646 ENSRNOT00000066284 3 1 1 87 9 41046176 41046280 AGAGACACAGAGACTGTGG 58 41046330 41046349 TAAAGGGCTGAGAAGATGCA 59 NA Rattus norvegicus 81 AABR07002905.1 ENSRNOG00000047959 ENSRNOT00000072570 2 1 1 80 1 88689439 88689458 TGCCACTATTGTGGTAAAGG 58 88688497 88689396 GAATGGCCGTATTCCAGTG 59 NA Rattus norvegicus 81 AABR07002247.1 ENSRNOG00000050476 ENSRNOT00000073121 1 1 1 80 1 69692263 69692300 AAATCCAAAGAACTCACAACGG 60 69692340 69692359 ACAAGACTGTAGCTTTGCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 3 5 10 83 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122197 87126968 TCATCATAATCGTCTGGGTCC 60 NA Rattus norvegicus 81 LOC100910214 ENSRNOG00000024462 ENSRNOT00000034036 3 1 1 80 12 41184885 41184904 AACACTTCCTGAAGCATCCT 59 41181806 41184845 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 Prss33 ENSRNOG00000029279 ENSRNOT00000034380 2 1 1 131 10 13174489 13174730 CTTAGCCCAGGAGTACCAC 59 13174376 13174394 TAGCACTATGCGCTCACTC 60 NA Rattus norvegicus 81 Pag1 ENSRNOG00000061328 ENSRNOT00000090023 1 1 1 80 2 94273160 94273178 CTTCCAGAGAAGGGAGAGC 59 94273221 94274189 AAATCTGGAGAACTGCTTGC 59 NA Rattus norvegicus 81 Lhx6 ENSRNOG00000005996 ENSRNOT00000008817 3 1 1 80 3 15419480 15419689 AGCAATTGCAGGTTATGCAG 60 15419419 15419437 TCATGTCCGCTAGCTTCTG 60 NA Rattus norvegicus 81 Cntnap5b ENSRNOG00000032206 ENSRNOT00000047108 3 1 1 80 13 22122244 22146993 GAAATCATCACAGGCAGTGG 59 22147032 22147054 GAGAGTAACACGATTTCTTCTGG 59 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 3 2 2 80 7 136704177 136704197 CTACTTTGAGGGAGAAAGGAG 58 136700860 136704135 TTCATGGTCTGATCCTTGC 58 NA Rattus norvegicus 81 Fgf11 ENSRNOG00000014882 ENSRNOT00000020152 1 1 1 81 10 56406877 56406895 CAGGGTTTCTACCTCCAGG 59 56406604 56406833 GATTGAAGTGGGTGAAGGAG 58 NA Rattus norvegicus 81 B3galt5 ENSRNOG00000030983 ENSRNOT00000050178 2 1 1 85 11 36677881 36679002 CTTACCTGGCAAAGATGGC 59 36679051 36679069 GCTGAAGTACAAGCAGAGC 59 NA InUTR Rattus norvegicus 81 B4galt3 ENSRNOG00000003551 ENSRNOT00000004735 2 1 1 80 13 89647513 89647657 AAGTTTGGATACAGCCTTCC 58 89647698 89647718 ATTCATCTTCAGGTACTGGTC 57 NA Rattus norvegicus 81 Dzank1 ENSRNOG00000007440 ENSRNOT00000029701 3 1 1 80 3 138635375 138635393 CCTCAGGTCCTATGCTCAG 59 138634174 138635332 GTAGCAGAGATGAGCTTTCC 58 NA Rattus norvegicus 81 LOC102550668 ENSRNOG00000033487 ENSRNOT00000048673 1 1 1 60 19 33130411 33130433 GGTGATATTGTAGACATCAAGGG 59 33130452 33130471 AACACTTGTGGGTCATTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 1 1 1 92 8 22951257 22951406 CACCCTCACGATCCTTCTG 60 22951462 22951480 GACACAATGGTGCTTTCCC 60 NA Rattus norvegicus 81 LOC500876 ENSRNOG00000004914 ENSRNOT00000006510 3 1 1 60 7 100382756 100382775 GAAATCAGACTCCCAAGTCC 58 100382715 100382734 ATGTATCCTGCTGAGACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt23 ENSRNOG00000011907 ENSRNOT00000016657 2 1 1 80 10 87397215 87397233 ATATCCATGAGCTGAGGCG 59 87394528 87397172 TTTCCAAAGCGGATTTCCTG 59 NA Rattus norvegicus 81 Uox ENSRNOG00000016339 ENSRNOT00000021970 1 1 1 80 2 252452369 252466747 GACTATGGAAAGAATGATGAAGTGG 60 252466780 252466803 CCTCTGAATATGGAGAACTTTGAC 59 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 2 2 2 94 7 2850630 2850648 CTGAAGGCGTATATGCGAG 58 2850705 2851373 TTCACCCACTCAAGGATCTC 59 NA Rattus norvegicus 81 Ccl3 ENSRNOG00000011205 ENSRNOT00000015139 2 1 1 146 10 70870369 70870935 CTTCTCAGCGCCATATGGA 60 70869992 70870010 CGGTTTCTCTTGGTCAGGA 59 NA Rattus norvegicus 81 Zfp414 ENSRNOG00000008378 ENSRNOT00000011094 3 1 1 83 7 18499383 18499845 TACTTCAAGTGTGAGAATTGCC 59 18499886 18499907 ACCATGGTCTATACAAACATGC 59 NA Rattus norvegicus 81 Zfand2b ENSRNOG00000018639 ENSRNOT00000025219 3 1 1 98 9 82372755 82372773 ATTGCTTTGCAGAATGGCT 59 82372919 82373212 CTCTTGAGAACTTGGGATCTG 58 NA Rattus norvegicus 81 Eps8l3 ENSRNOG00000048209 ENSRNOT00000074806 3 1 1 80 2 210679514 210679712 GAGATTCTGGAGATTCTGGAC 58 210679754 210679772 GCTGGGAATGTAACCAGTC 58 NA Rattus norvegicus 81 RGD1564039 ENSRNOG00000048021 ENSRNOT00000073262 2 1 1 87 3 143395910 143395930 GTAATTTCCAGAGGGAATCCT 57 143394847 143394915 GGACATAGTTTAGATATGGGCA 58 NA Rattus norvegicus 81 Andpro ENSRNOG00000031840 ENSRNOT00000049635 2 1 1 80 3 143895535 143896322 TCTATAACCTAAAGCGGACTCC 59 143895476 143895495 ATAGGAGCTTCCTGCATCTG 59 NA Rattus norvegicus 81 AABR07061614.2 ENSRNOG00000053654 ENSRNOT00000088301 2 1 1 60 4 136228550 136228568 CCTCAAGGATCTTACACGG 57 136228505 136228524 AAGTCTTTCAGCTTCTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894,ENSRNOT00000036646 1 2 2 80 14 64732679 64734905 CTCTTGACTTGTGGTCCTC 58 64734948 64734967 GTCTCCTTCAAACACAACCT 58 NA Rattus norvegicus 81 Git1 ENSRNOG00000061270 ENSRNOT00000078730 3 1 1 80 10 62662339 62662359 AGAATGGGCATTACATCATCC 58 62660530 62660719 TGGCCAATTGATCCAAACTC 59 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 3 2 2 80 8 29714511 29853598 TCATAGTGCAAGTTCCTCCC 60 29853641 29853659 ATAACAGGGTCACACTGCT 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 3 2 2 80 2 210866781 210866802 TGACCTACAGGAATTTGTAGCT 59 210866508 210866743 CGGTAGCAGAATGACTTTATGG 59 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 2 2 2 80 10 89470618 89471500 TCTAACACCCTCATGCTTCC 60 89471540 89471561 CAAATTCTCATCCACGAATGCT 60 NA Rattus norvegicus 81 AABR07037412.2 ENSRNOG00000047165 ENSRNOT00000073114 3 1 1 80 X 20224019 20225002 AGGTCCATCCTAGAGAAACAG 59 20225044 20225062 ACCCTTCTCCATGTAGTGC 59 NA Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 3 1 1 81 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070100 148070118 TCTCTTTCCTGAGGCACTC 59 NA DesignNoJunction Rattus norvegicus 81 Klf8 ENSRNOG00000039057 ENSRNOT00000041039 1 1 1 80 X 18862102 18873589 GGAGGTATTCAAACAGGTCAC 59 18862042 18862064 GGAGAAGTCATATTCCTTCTGTC 59 NA Rattus norvegicus 81 Olr903 ENSRNOG00000047956 ENSRNOT00000050898 1 1 1 60 7 5401836 5401855 TTCTCCTTGCTATCATGTCC 57 5401876 5401896 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfhx4 ENSRNOG00000008765 ENSRNOT00000011641 1 1 1 80 2 98448690 98456250 GACAGCCTCAGAAGAACTC 58 98448628 98448649 GTCTCTTTCTCATCATCCTCAG 58 NA Rattus norvegicus 81 RGD1310819 ENSRNOG00000018366 ENSRNOT00000068496 2 1 1 81 9 44195092 44195919 CATCAGAACTTGGCTCAGG 58 44195029 44195048 GATCGGAACTAGCATAGCTG 58 NA Rattus norvegicus 81 Rdm1 ENSRNOG00000020751 ENSRNOT00000028174 1 1 1 80 10 89545225 89546157 CCATCGTGGTTCTAGAAAGTG 59 89546198 89546217 CTTCTTCACTTCTGGCATCG 59 NA Rattus norvegicus 81 Suv420h1 ENSRNOG00000016790 ENSRNOT00000022486 1 1 1 80 1 219036704 219036806 CAGACCTAACTGTAAGTTTGTG 57 219036844 219036865 TCTTCTCCAGGTTCAATATCTC 57 NA Rattus norvegicus 81 Col6a4 ENSRNOG00000031782 ENSRNOT00000047563 1 1 1 80 8 114731869 114737096 GGAGACCATGGACCAAGAG 60 114731807 114731825 CTTAGGTCCTCTCACACCC 59 NA Rattus norvegicus 81 Hat1 ENSRNOG00000001524 ENSRNOT00000002085 1 1 1 80 3 58051983 58052001 ACCGTAGGCTACATGACAG 59 58052041 58052377 CAGTATCAGCATCTGACTTACAC 59 NA Rattus norvegicus 81 Hat1 ENSRNOG00000001524 ENSRNOT00000002085 3 1 1 80 3 58051018 58051038 AACCCTCCTCCATACATACTC 59 58051076 58051332 GTCATGTCAGCCTTGTATATCTG 59 NA Rattus norvegicus 81 Serpinb3 ENSRNOG00000031134 ENSRNOT00000040021 3 1 1 83 13 27188210 27188231 GTGGAAATACCATACAAAGGCA 59 27187523 27188168 TTCTTCAAGCTTCTTCAGACC 58 NA Rattus norvegicus 81 Zfp949 ENSRNOG00000043223 ENSRNOT00000032976 2 1 1 80 8 96363882 96376794 TGAATATGTGGAGTTGGTGTC 58 96376835 96376854 TGAGCATCACTGAGATTCTG 57 NA Rattus norvegicus 81 Tmem8b ENSRNOG00000015664 ENSRNOT00000021227 3 1 1 80 5 59186271 59191041 TTCTTCTCCACGTTCTACCA 58 59191082 59191102 GAACTGAAGCACATCGTAGTC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502,ENSRNOT00000087274 1 5 5 80 X 159167282 159167300 GTGCTTTGACAAGTTCTGC 58 159167342 159168348 TTATAGTGCACCTCCTTAGCA 59 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000091710,ENSRNOT00000006849 2 2 2 60 13 90387585 90387603 GCTTCTATAATGTCGGCCA 57 90386724 90386743 TACTTCTCCAGGATCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Hectd4 ENSRNOG00000001352 ENSRNOT00000001826 3 1 1 80 12 40755439 40756494 TGAAATCAGAACCAGAGCCT 59 40755378 40755399 CACTGCTGTATGAATTCCTCAC 60 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419,ENSRNOT00000088589,ENSRNOT00000090323 3 3 3 80 3 43344168 43344187 TTCAAGGAGGCAAAGATTGG 59 43344230 43344867 GTTGTGCAACCTCACTCTC 59 NA Rattus norvegicus 81 Slc13a5 ENSRNOG00000014870 ENSRNOT00000020043 2 1 1 80 10 58815530 58817587 AAAGGATGTGAGACTTCAGG 57 58815469 58815490 AATAATAGCAGGTCTCACTGAG 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558,ENSRNOT00000080934 3 2 2 80 19 24413102 24416310 CCTACGAGAAATTTGGAACTATCC 59 24416348 24416367 GGGTTTGGATCACTTTCAGC 60 NA Rattus norvegicus 81 Rnf13 ENSRNOG00000029209 ENSRNOT00000068606 2 1 1 90 2 148037240 148037258 GAGATGAGTACGACGTGTG 58 148037310 148037794 CAATGATAAGCATGGGAACAG 57 NA Rattus norvegicus 81 Olr1767 ENSRNOG00000029322 ENSRNOT00000040369 2 1 1 60 X 137014419 137014437 CTGTGGTGATCCCTATGCT 59 137014377 137014397 GCTTTCACTTCCTGATTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1767 ENSRNOG00000029322 ENSRNOT00000040369 3 1 1 60 X 137014625 137014646 CTCTGTTGTGGTAATTCTTGTC 57 137014586 137014604 TGGAATGCCCATGATAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam65c ENSRNOG00000010791 ENSRNOT00000035463 1 1 1 80 3 164716615 164716637 GATTGTCAGTCTATGTCAGTCTG 59 164716200 164716576 CCTTTCTCACCAAACGACAG 59 NA Rattus norvegicus 81 Fam65c ENSRNOG00000010791 ENSRNOT00000035463 3 1 1 80 3 164716205 164716581 CAACACTGTCGTTTGGTGAG 60 164716144 164716164 GACAGAAGGCTTCTTGTTCTG 59 NA Rattus norvegicus 81 Mgat4d ENSRNOG00000003695 ENSRNOT00000004982 3 1 1 80 19 24528386 24528405 ACAAACCATCTCTGTTCCAG 58 24528445 24532608 AGTAGTAATGATCCTTGAGGTG 57 NA Rattus norvegicus 81 Tagln2 ENSRNOG00000008301 ENSRNOT00000011208 1 1 1 80 13 90807977 90808299 CAACTGGTTTCCTAAGAAATCC 57 90807918 90807936 CCAATCACATTCTTGCCCT 58 NA Rattus norvegicus 81 Zfp494 ENSRNOG00000042772 ENSRNOT00000065954 3 1 1 87 7 18180370 18180388 GAAGTGGAAATCCTGTGGC 59 18175939 18180320 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 Eif2a ENSRNOG00000013393 ENSRNOT00000018022 2 1 1 83 2 148739237 148739259 CCCTAACCTACAACTTTATGACG 59 148739302 148739809 GAAGGACACCAATTCTGCA 58 NA Rattus norvegicus 81 Slc9a2 ENSRNOG00000015567 ENSRNOT00000021270 1 1 1 80 9 47418291 47418314 GTCAATGAACAGCTCTATATCCTG 59 47418351 47425451 GAACAAGTTGTACAGGACCAC 59 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 3 1 1 88 3 137632430 137632449 AAGCCAGAAGGATTTCAAGG 58 137632358 137632382 TAATAGGTGTAGCCATCTTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1264 ENSRNOG00000047687 ENSRNOT00000073036 3 1 1 60 2 35285965 35285986 AATATACAGAGACCCATTTCCC 58 35286005 35286025 ACCGTGATAACATAGATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif7 ENSRNOG00000026857 ENSRNOT00000033491 3 1 1 80 1 141443938 141443958 CTACATCAGAGGAGGAAGAGG 59 141443477 141443897 AGTTGCTGATTCCATTCCTG 58 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000008944,ENSRNOT00000082469 2 2 2 80 13 90572649 90572669 CATCTTCCTCTGGGAGAAGTC 60 90572709 90576203 TCAAGACAGTTTACCACACCT 59 NA Rattus norvegicus 81 Spns3 ENSRNOG00000015873 ENSRNOT00000041886 3 1 1 80 10 59098925 59099963 TTCATCTCCTACCAGTATTCCTG 59 59098867 59098886 AATGGTGGAATAGCTTGCTG 59 NA Rattus norvegicus 81 Prkcsh ENSRNOG00000013360 ENSRNOT00000018009 2 1 1 80 8 23024474 23024492 TTTGATTTCGGTCCCTCTG 58 23024535 23024906 CCGGTAGACATACTCATTGG 58 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000012017 2 1 2 168 7 26646836 26750203 TACAATCCCATCCAGCTGG 59 26646686 26646704 AGATGAGTTCGTGGTCCTC 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 3 1 2 170 7 26646838 26690121 TTAGTCTTGCGTTCGAGCT 60 26646686 26646704 AGATGAGTTCGTGGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07067274.1 ENSRNOG00000038721 ENSRNOT00000051890 2 1 1 60 9 37593327 37593345 TATCCACTGGTGATGTTGC 58 37593415 37593434 TCATACTTCTCCTTCAGCGT 59 NA DesignNoJunction Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 3 1 1 80 7 139050713 139050731 TTGGAACCTGATTCTGCTG 58 139049633 139050151 GTGGTGTTGTAGTAACTGGAC 59 NA Rattus norvegicus 81 Cdh19 ENSRNOG00000029841 ENSRNOT00000044628 2 1 1 80 13 32424113 32424133 TGTCAATGACAATGAACCCAG 59 32408505 32424073 ACAAATGTTCCTTCTGGAGAC 58 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 2 1 1 97 5 76167985 76168003 CCCAGTCTCAGTTCGACAG 60 76168064 76171177 TTCCTGCTTGTAGACCTCG 59 NA Rattus norvegicus 81 Sln ENSRNOG00000009047 ENSRNOT00000011974 2 1 1 110 8 58431420 58435390 TTCTCTTCAGGACGTGAAGAC 60 58435462 58435480 AAACAGCTCCTGGGTAGAC 59 NA InUTR Rattus norvegicus 81 Myf6 ENSRNOG00000004878 ENSRNOT00000006523 2 1 1 81 7 49740249 49740555 TAAGGAAGGAGGAGCAAGC 59 49740186 49740205 TGAGGAAATACTGTCCACGA 59 NA Rattus norvegicus 81 Chp2 ENSRNOG00000019112 ENSRNOT00000025832 3 1 1 89 1 192171259 192171277 GATGAAGACGATGCCACAC 59 192171328 192171496 ATAGAGCTGAAATGCAAAGCG 60 NA Rattus norvegicus 81 Stxbp3 ENSRNOG00000020392 ENSRNOT00000027666 2 1 1 80 2 211628469 211628487 TGGATGACTTCACCACCAG 59 211627431 211628428 TCTCTATAACTGTCACACCCTC 59 NA Rattus norvegicus 81 Slc25a4 ENSRNOG00000010830 ENSRNOT00000014704 3 1 1 125 16 49269400 49269418 TTGTGAGCTGGATGATTGC 59 49269505 49270274 CCGTGTACATAATATCAGCCC 59 NA Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327,ENSRNOT00000076818 1 2 2 103 20 46429964 46429982 TCAAGGATAAGGGCGACAG 59 46505776 46505794 AGTCCCTTCGTTCTGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Btbd16 ENSRNOG00000036675 ENSRNOT00000067742 1 1 1 80 1 201349005 201349026 CTACTTGACAGCCTTGATACAG 59 201349063 201352386 CTCTCAGTTGAATGGACTTTCAG 60 NA Rattus norvegicus 81 RGD1562914 ENSRNOG00000012022 ENSRNOT00000016127 3 1 1 124 8 55695194 55696308 TTTCGTCTTTAGAGACTCCTGG 60 55695091 55695109 CTGACTCCAGTTGGGAGAG 59 NA Rattus norvegicus 81 C2cd4d ENSRNOG00000020832 ENSRNOT00000028263 3 1 1 77 2 195604409 195604429 AACCCAATCTTCAACGAAGAC 59 195604468 195604486 CTTGGCCCTTAGACTACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 2 1 1 80 3 159795099 159795120 CAGAACAACAGTAGATGACACC 59 159785387 159795060 GAAGACTTCCTTGTAGACCCA 59 NA Rattus norvegicus 81 Adgre5 ENSRNOG00000004489 ENSRNOT00000006152 1 1 1 80 19 24861353 24861373 TGAGTTTCTCTGTTGAAGTCC 58 24860547 24861311 CGATGAGTTTCTGGATGGT 57 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 1 2 2 80 1 37770967 37771086 GAGACTATTTGTTCAGGGAGG 58 37771125 37771146 CTCTTGAGAATGAGACCTTCAG 58 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295,ENSRNOT00000074685 2 2 2 95 13 36154866 36154884 CTGTGGGCGATGTAAACAC 59 36147914 36150852 CCTTGGAAGTTCCTTTCAGC 59 NA Rattus norvegicus 81 Bgn ENSRNOG00000055962 ENSRNOT00000085201 3 1 1 80 X 157323690 157323708 CTACCTTCAGTGCCATGTG 58 157323334 157323646 CAGTCTTCAGACCCAAGTC 58 NA Rattus norvegicus 81 Inhbb ENSRNOG00000060237 ENSRNOT00000086350 3 1 1 83 13 35439199 35441789 GCTTTGCAGAGACAGATGG 59 35439134 35439153 CAAATAGGTTCTGGTTGCCT 58 NA Rattus norvegicus 81 Fam213a ENSRNOG00000011140 ENSRNOT00000014819 1 1 1 93 16 17504439 17504458 CCAACACAGACATGTTTCTC 57 17504514 17506003 GTCCTTGGTTCTTTCTCCA 57 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 2 2 2 80 12 48345338 48346499 CATTGGAAGAAATGTGCTAACC 58 48346540 48346558 TAAACGTAGGCTGCTTGGA 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 1 2 2 80 3 161230716 161232941 CTCTTTAAGTATGCAGCAGATCC 59 161232981 161232999 CATCTTTCCTCCTGTTGCC 59 NA Rattus norvegicus 81 LOC100909434 ENSRNOG00000047473 ENSRNOT00000032351 3 1 1 60 2 182798597 182798615 AGCATTTCTGTGGATGACG 58 182798639 182798657 CATTATACACCTGCCTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt4 ENSRNOG00000024271 ENSRNOT00000029966 3 1 1 69 X 24364227 24364247 TTCAAATGGATCTCTTCACCC 58 24362816 24362836 CTCAACTTGAAGATGCATTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ric8a ENSRNOG00000013256 ENSRNOT00000018470 2 1 1 84 1 213611628 213611646 GGAAGGCATGACAGAGGAG 60 213611694 213612079 GATGAGTCTGTGCCTGGAG 60 NA Rattus norvegicus 81 AABR07008377.1 ENSRNOG00000052207 ENSRNOT00000041483 3 1 1 60 2 55055494 55055514 AAGTGTGGAGTTATAAGCCCT 59 55055454 55055472 TCTGCCACTTCTCTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc21b ENSRNOG00000005868 ENSRNOT00000007832 2 1 1 80 3 52328422 52329023 TTAAATGGAGAACAGCACGAG 59 52328362 52328382 ACGTAATTCTTCGCAAGTTCC 59 NA Rattus norvegicus 81 Tspyl5 ENSRNOG00000006278 ENSRNOT00000008227 1 1 1 60 7 72327128 72327147 CACGATCTACAGTCCCTGAG 59 72327087 72327105 ACCACCCAAAGAAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260,ENSRNOT00000020955 1 2 2 80 9 42939779 42941862 GCAGCAGGAGAATACTATTGAG 59 42939720 42939739 TTGTCATAGAGTGGAGCAGG 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 1 2 2 80 8 50238345 50238513 TATGGCTCCTTTGAGAATGGT 59 50238285 50238304 GTAACTGTAGGAGAGGTCCC 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 2 2 2 80 8 50239768 50239786 TTTGCCTGGGCATATTCCT 59 50239382 50239724 TCTTCTTCCTTTGCCTCCA 59 NA Rattus norvegicus 81 Acot8 ENSRNOG00000015187 ENSRNOT00000020740 2 1 1 81 3 161263630 161267411 CCAGTACTTAAGGGATCCTAACC 60 161263571 161263589 CTCAATAGGCACCTCTCGG 60 NA Rattus norvegicus 81 Smim12 ENSRNOG00000014352 ENSRNOT00000019224 2 1 1 60 5 145314507 145314526 GGACAAGCTAGAATTTGCCC 59 145314549 145314567 TCAATTCTTCTCTGGGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc130 ENSRNOG00000008319 ENSRNOT00000011150 2 1 1 84 19 25369944 25370973 GACTCCGATCTACAGGTTCC 59 25369879 25369897 ATAGTCACAGTTGGCAGGG 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172,ENSRNOT00000082356 3 2 2 80 8 128585875 128585894 GCACTCAACAGACTCTTCAC 59 128585935 128587753 GTATGGATCTTGCTTGTGCTG 60 NA Rattus norvegicus 81 LOC102547078 ENSRNOG00000047740 ENSRNOT00000057007 3 1 1 85 3 81884041 81886453 CACCAGCTATGATGAAGATGAG 59 81883977 81883995 CCTCTTCCTCTGGAGAACG 59 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818,ENSRNOT00000074457 3 2 2 80 8 32306776 32307432 GAGATTCAGGAGGAAATTGATGAG 59 32306719 32306738 GTTCTCTGAGATGGAGGAGG 59 NA Rattus norvegicus 81 AABR07067526.1 ENSRNOG00000060633 ENSRNOT00000080275 3 1 1 61 9 51129583 51129601 ACAATCCACAGAAACCACG 58 51129629 51129647 GAGTCTCTGGGTCTCTGGA 60 NA DesignNoJunction Rattus norvegicus 81 RGD1564447 ENSRNOG00000032401 ENSRNOT00000049001 3 1 1 60 7 94777986 94778004 GTGCGAGAAATTGCTCAGG 60 94778028 94778046 CACCAATAGCTGCACTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr56 ENSRNOG00000051464 ENSRNOT00000087667 2 1 1 60 1 167944759 167944780 CTTCATTCAACTCTTCACTGTC 57 167944801 167944819 GCGATCATAAGCCATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbpj ENSRNOG00000046327 ENSRNOT00000071929 2 1 1 80 14 59670036 59670055 AACCCTGTGCATTTATTGGA 58 59666975 59669993 CTGTGCAGTAGTTCTTCCC 58 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 1 1 1 60 1 248403079 248403099 AATGATCCCTATGAGGAGCAC 60 248403118 248403139 GGCAATTCCAGTTAATGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 2 1 1 60 1 248403080 248403099 ATGATCCCTATGAGGAGCAC 59 248403121 248403140 GGGCAATTCCAGTTAATGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt2 ENSRNOG00000046569 ENSRNOT00000065084 2 1 1 60 X 21944972 21944993 AGGGTCAGCATAATCAAATCCT 60 21944933 21944957 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sez6l ENSRNOG00000025612 ENSRNOT00000032193 3 1 1 80 12 50237164 50238017 CATCTATGTCACGAGGTGC 58 50238061 50238079 ACAGTGATCTGGCTGTAGG 59 NA Rattus norvegicus 81 Dpy19l2 ENSRNOG00000045585 ENSRNOT00000071884 1 1 1 80 8 25796729 25796747 GCTCTGCTTCTCCAATGTC 59 25780297 25796686 AATAACGAGGCTATCTGGGT 58 NA Rattus norvegicus 81 Chrna6 ENSRNOG00000012283 ENSRNOT00000016452 1 1 1 80 16 68865362 68866505 CAAAGGAGGTAGAAGATGACTG 58 68866543 68866564 CACAGACGATTATAAACACCCA 59 NA Rattus norvegicus 81 Arhgef6 ENSRNOG00000000869 ENSRNOT00000001158 2 1 1 80 X 159801795 159839307 CTTCAAGTGGAAGTGTTTGAG 58 159801735 159801755 GACAGCTAGAAGGGTATTCAG 58 NA Rattus norvegicus 81 Ttc21a ENSRNOG00000034089 ENSRNOT00000043831 3 1 1 80 8 128628653 128628674 AAGAAATCCATCAAGTACCTGG 58 128628715 128629921 GAAGTACTTTGCCTTGCCC 59 NA Rattus norvegicus 81 Cstf2t ENSRNOG00000050289 ENSRNOT00000074100 2 1 1 60 1 249575731 249575750 CCTAACGTCATGTTGAACCA 58 249575771 249575791 GTCTTCTTGGTAAATGCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 3 2 2 80 12 51852895 51853586 GAGGACTGTCTTATCAAGATCAC 59 51852837 51852857 ACCACATAGAGTCCTCATCAG 59 NA Rattus norvegicus 81 Limd2 ENSRNOG00000025448 ENSRNOT00000035973 1 1 1 80 10 94351821 94351924 AGCGGTCTAAGTCCTTTAGC 60 94351760 94351779 GCTCCATAGGGTACACAGTC 60 NA Rattus norvegicus 81 Rnasek ENSRNOG00000018881 ENSRNOT00000025767 1 1 1 105 10 56849247 56849923 TCATGTTGATAATGCTCGGG 58 56848689 56848707 TATATGTTCTGAGGGCCGT 58 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 2 2 2 88 9 45536282 45538226 AAGTCATGAAGCCAACTGG 58 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 LOC100365525 ENSRNOG00000031248 ENSRNOT00000058250 1 1 1 80 2 132537551 132537572 CAAATTGGATTCAGACGAAGAG 58 132536528 132537513 TGTAGGAAGTCCTTAAAGATCC 57 NA Rattus norvegicus 81 Cobll1 ENSRNOG00000027016 ENSRNOT00000001607 3 1 1 80 3 51195814 51195837 GTTATATGCCATGGATATCAGCAG 60 51187903 51194603 GATATTTGGCAGGACTCTTGG 59 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 1 1 2 86 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561900 83562975 TGTCTCTTTGTCACCAGGG 59 NA Rattus norvegicus 81 Ccdc60 ENSRNOG00000032684 ENSRNOT00000046882 1 1 1 80 12 46146659 46146679 AGAGTTAAACAAGTTCCAGCC 59 46146720 46156378 TCGTATTCGTAGGTGGTCAG 59 NA Rattus norvegicus 81 Ccdc60 ENSRNOG00000032684 ENSRNOT00000046882 2 1 1 80 12 46146660 46146681 GAGTTAAACAAGTTCCAGCCAG 60 46146720 46156379 TTCGTATTCGTAGGTGGTCAG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 1 1 1 66 2 36011093 36011111 CTTCATTCGATGCTCCTGG 58 36011785 36012943 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 LOC100364877 ENSRNOG00000049646 ENSRNOT00000075721 3 1 1 62 X 134389439 134389457 GACCGAAAGTGAACGTCTC 59 134389480 134389501 CCCTTGTTTGATTTCTGAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000087190,ENSRNOT00000089624 2 2 5 100 8 99717199 99717219 TCAGAATGACAAGAAGGAGGA 59 99717278 99723371 CCTCATCAAGAGACTTGATCTC 58 NA Rattus norvegicus 81 Tchp ENSRNOG00000001191 ENSRNOT00000001577 1 1 1 82 12 47641222 47642452 TGATGAGCGAGGTTCTGAC 60 47641158 47641176 TAGGGTCTCCTCTTGTGCT 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 2 2 2 80 20 50177663 50194468 TGAACAGACAAAGGCTTTCG 59 50194507 50194529 TATAGACCTCTGATTGGACACTG 59 NA Rattus norvegicus 81 Ptx3 ENSRNOG00000012280 ENSRNOT00000016541 3 1 1 78 2 158098107 158098125 CAATGGACTTCATCCCACC 58 158098593 158098611 GATGAACAGCTTGTCCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 2 2 2 80 8 109192412 109192431 TGTATAGCGATGCCTTCCTC 60 109192474 109202625 GTCTGACTTCACCTTGCCT 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256,ENSRNOT00000000824 3 2 2 80 12 50298928 50298947 TCATCTTACAGACCTGCCAG 59 50297486 50298887 GCTGGGAATTCACAATCAGTC 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087520,ENSRNOT00000078309 3 2 3 80 20 5227632 5227650 CTACACTCCTCTCCCTGGA 59 5227306 5227325 GTCTGGATCTCCTTCTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1107 ENSRNOG00000010787 ENSRNOT00000014316 3 1 1 60 7 140032651 140032671 ATTCACCACTACACTTGTGAG 58 140032692 140032711 TGGAGATATCCGAACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agpat9 ENSRNOG00000002159 ENSRNOT00000002936 2 1 1 80 14 10357318 10358547 CATCCATTACCATAACAAGCAG 58 10357259 10357277 AAGACATCGATGGGAGAGG 59 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 2 1 1 73 13 26768599 26768617 GACTGAGTACCTGAACCGG 60 26605774 26768563 ATAGTTCCACAAAGGCATCC 58 NA DesignNoJunction Rattus norvegicus 81 Popdc3 ENSRNOG00000047102 ENSRNOT00000073259 1 1 1 80 20 50419403 50419582 CCAGTATCTTGTTTGTGTTCG 58 50419622 50419642 TATACAGCACGTGGAATTCTC 58 NA Rattus norvegicus 81 RGD1564340 ENSRNOG00000013243 ENSRNOT00000066617 1 1 1 81 3 176721957 176723274 GAAGAGGAGTGCTCCTAGAC 59 176723318 176723336 AGGAATGTGGACTGTCCAG 59 NA InUTR Rattus norvegicus 81 LOC102551265 ENSRNOG00000030551 ENSRNOT00000042834 3 1 1 86 8 99777426 99777448 CTCAGGTCATGAAGTCATAACTC 59 99777493 99779210 TGGACTTCCATCTTCTGGAG 59 NA Rattus norvegicus 81 Rnf149 ENSRNOG00000013946 ENSRNOT00000018684 1 1 1 104 9 46299137 46299155 GGCTCACAGTTTGGAAGTC 59 46294660 46298049 ATCAACATCGATTCCCTTCTC 58 NA Rattus norvegicus 81 Slc26a9 ENSRNOG00000029514 ENSRNOT00000009742 1 1 1 80 13 48532668 48532823 AGTCATTGCCAAGACAGGT 59 48532867 48532885 ATCCTCTTCTCCTGCTTCC 59 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 1 1 1 80 10 56837918 56837940 AATAACTCCTACCTCTTCACACC 60 56837318 56837879 GCTCAAACACTCACTTCCTG 59 NA Rattus norvegicus 81 Slc25a24 ENSRNOG00000020470 ENSRNOT00000027765 2 1 1 83 2 211952307 211953846 GTCATGATGCAGGTTCACG 59 211953893 211953911 AGAACGGATTCCTCCTTCC 59 NA Rattus norvegicus 81 Tpst2 ENSRNOG00000000664 ENSRNOT00000000831 2 1 1 82 12 50348848 50348866 TGATCCGTACGCAAATCCA 60 50346627 50348802 AGTCTCCTTTCAAGACCCG 59 NA Rattus norvegicus 81 Trpv4 ENSRNOG00000001195 ENSRNOT00000001586 2 1 1 80 12 47712802 47718759 GGAAGGTCGTAGAGAAGCA 59 47718803 47718821 GCCGGTTGAAGACTTTGAG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000028939 ENSRNOT00000041384 3 1 1 60 13 91334116 91334134 TGATCCGTAAATACGGGCT 59 91334158 91334176 ATGTCCTTCGCGTACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn11 ENSRNOG00000030124 ENSRNOT00000046323 1 1 1 80 12 40895696 40915019 ATCCCGGAGATGGTTTCAC 60 40915063 40915081 AAACTGCCATCGACTCCTC 60 NA Rattus norvegicus 81 Klhl40 ENSRNOG00000019390 ENSRNOT00000026234 3 1 1 82 8 130418928 130419048 AGGCAAAGACAGGAAATGTC 59 130419093 130419111 TCTTCATGGGTGCTAGCTC 59 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 2 2 2 80 8 119488865 119489377 ATTGATGAGGAAGGGAACCTG 60 119488805 119488823 GAAGATAGGCAGTCCCTCC 59 NA Rattus norvegicus 81 Olr1766 ENSRNOG00000037506 ENSRNOT00000050717 3 1 1 60 X 136892368 136892386 AAACAGAGGGCTTTCTCCA 59 136892326 136892346 TCCCATAATAGAGACTGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ets1 ENSRNOG00000008941 ENSRNOT00000011925 3 1 1 81 8 33851634 33854292 TCCTGCAGAAAGAGGATGTG 60 33854336 33854354 TAATCCGAGGTGTAACGGG 59 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 3 2 2 80 9 54950 56045 AGCTTCCCAGGCTTATGAC 60 56088 56107 ATATTCTTTCTGCTCCCGGA 59 NA Rattus norvegicus 81 LOC100909792 ENSRNOG00000050466 ENSRNOT00000074681 3 1 1 60 2 168228103 168228122 ACATCATGCTTTCAGGTGAC 59 168228141 168228163 CCAAGACTGAACTGCAATATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000049136 ENSRNOT00000072964 3 1 1 144 2 115307408 115307429 TCAGCACTTGATACAACATGTG 59 115304243 115307308 GCCCATCATTTGTAGATTTCTAGG 60 NA InUTR Rattus norvegicus 81 Hspa4 ENSRNOG00000016596 ENSRNOT00000023628 3 1 1 80 10 38607090 38607813 AGTTTGTGAGTGAAGATGATCG 59 38607031 38607051 CTTCTCCATCTTCATACAGCC 58 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000073603 3 1 2 90 10 59923352 59923370 TGGATTCCCATCTCCACAC 59 59923424 59934349 AACTTGGGCATTGTGACAG 59 NA Rattus norvegicus 81 Lrp1 ENSRNOG00000025053 ENSRNOT00000031005 2 1 1 80 7 70888027 70889565 GTGTGACAACGACAATGAC 57 70887965 70887983 CACTTGAACTGGGTACTGG 58 NA Rattus norvegicus 81 AABR07070669.1 ENSRNOG00000056409 ENSRNOT00000082411 1 1 1 79 8 79419441 79419460 CACATCCTCCTTCTCATCTG 58 79420547 79420565 GGCGGATTCCTTTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Zmat5 ENSRNOG00000007849 ENSRNOT00000010332 3 1 1 109 14 84953926 84959955 GACATGTTCCGAGATGCAG 59 84961769 84961787 GAGAATCTGCAGTTGGAGC 59 NA Rattus norvegicus 81 Scpep1 ENSRNOG00000002358 ENSRNOT00000003219 1 1 1 80 10 76253181 76253888 TAAAGAATTCCAGACGGTTCC 58 76253121 76253140 AGTTCTAAACTGATGCCAGC 58 NA Rattus norvegicus 81 Hnf1a ENSRNOG00000001183 ENSRNOT00000001565 1 1 1 80 12 47408215 47408234 TCTGAAAGAGCTGGAGAACC 60 47408277 47418698 GGGTCCTCCTGAAGAAGTG 59 NA Rattus norvegicus 81 LOC100909485 ENSRNOG00000034120 ENSRNOT00000045802 2 1 1 60 X 18340802 18340825 GAATATACCAAAGAAGATGGCTCC 60 18340765 18340786 TGGCTTTAACTTGGTGAATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029989.1 ENSRNOG00000047607 ENSRNOT00000075322 3 1 1 82 10 62414340 62414362 AACACATCTTCTTGCTCTTCC 59 62414404 62414424 GTCAGTACTAATTGCCAGGAC 59 NA Rattus norvegicus 81 Crabp2 ENSRNOG00000048421 ENSRNOT00000072198 2 1 1 110 2 184883140 184883349 AGACCCTGTAAGAGTTTGGTG 60 184883421 184883439 ATTGGTCAGTTCTCGGCTC 60 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477,ENSRNOT00000014924 2 2 2 80 16 59241518 59241539 AGGTCAAAGAGAAGTTCAAAGG 59 59241576 59242671 CTTCGCTTACCTTCTTATAGGAC 59 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624,ENSRNOT00000046377 3 2 2 84 1 99948450 99948565 CCTGGATTGGGAATTACCTG 58 99948385 99948406 CTCATTGTAGGCTTCGATACAC 59 NA Rattus norvegicus 81 LOC100361913 ENSRNOG00000020628 ENSRNOT00000027998 2 1 1 89 1 87191503 87191521 GAGTTTGACTTGGCTGCTG 60 87191313 87191333 CTTTAGAGGACAGTGTTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000064734 1 1 3 80 20 4918828 4919023 AGGAAGAGAAACACAGGTGG 60 4918536 4918554 GAGGGACACATCAGAGCTC 60 NA Rattus norvegicus 81 Dcaf12l2 ENSRNOG00000031533 ENSRNOT00000047171 1 1 1 60 X 130824298 130824318 ACCTATTGTGATGAGTTGTCC 58 130824258 130824277 CCAGGAAGGAAACATGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srek1 ENSRNOG00000032735 ENSRNOT00000040533 2 1 1 80 2 33823305 33823323 CTCAAAGTCCAGGTCTAGC 57 33818855 33823263 CTGTTATGGGATCTACTCCTG 57 NA Rattus norvegicus 81 Pts ENSRNOG00000009250 ENSRNOT00000012434 2 1 1 80 8 54955329 54957592 CAAAGAATACATGGAGGAGGC 59 54955269 54955288 ACATCTGCAAAGTATGGCAC 59 NA Rattus norvegicus 81 Slc9a4 ENSRNOG00000015306 ENSRNOT00000065234 3 1 1 80 9 47315858 47315876 GATGAAACAGGCCATCGAG 59 47315918 47323109 ATCCTCTCAGACTGATAGGGT 59 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 2 2 2 80 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641411 52641429 ATAGCACAAGTTCTCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 3 1 1 144 16 47718543 47718562 GAGCTGGACAACAAATACCA 58 47723817 47723835 CATCTCCCAATTCTTGGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910577 ENSRNOG00000033583 ENSRNOT00000042498 3 1 1 103 7 9898079 9898097 CTGGAAACCTACTGGAACC 58 9898365 9898895 CAGTTGAAATACCTTCCATGAC 58 NA Rattus norvegicus 81 Shroom1 ENSRNOG00000007431 ENSRNOT00000074769 1 1 1 94 10 38821580 38821598 GTTCAGAAAGGACTGTGGC 59 38821737 38822354 AGTCAAGAACCTGGAAAGCT 59 NA Rattus norvegicus 81 LOC499331 ENSRNOG00000025644 ENSRNOT00000017133 1 1 1 60 1 234667125 234669677 CAGCCAGCACAATGAAGAC 60 234667083 234667103 TAGAGGGTTCCTCCAATACTG 58 NA DesignNoJunction Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000089657,ENSRNOT00000091344,ENSRNOT00000049310 1 3 3 87 20 4791226 4791244 AGATACCTGGAACTCGGGA 59 4790159 4790177 CATCACCTTCAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000089657,ENSRNOT00000091344,ENSRNOT00000049310 2 3 3 88 20 4791226 4791244 AGATACCTGGAACTCGGGA 59 4790158 4790176 ACATCACCTTCAGGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tsr1 ENSRNOG00000002980 ENSRNOT00000003992 1 1 1 80 10 61747463 61748281 GCCTTCCCACCTATATGCT 59 61748324 61748343 TTAGCTTCTTTCTGGCATCC 58 NA Rattus norvegicus 81 Polm ENSRNOG00000013647 ENSRNOT00000018319 2 1 1 80 14 86070592 86070770 TTGATCCTGAGCGGAAGAC 60 86070530 86070551 GAGGAAGATACTTGAGACCCAG 60 NA Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000084421 2 1 2 96 12 46869877 46870175 GGGAGTGGACAGAATGAGG 60 46870235 46870253 TAACCCTGTGGATCCATGG 59 NA InUTR Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000084421 3 1 2 96 12 46869878 46870176 GGAGTGGACAGAATGAGGG 60 46870235 46870254 ATAACCCTGTGGATCCATGG 59 NA InUTR Rattus norvegicus 81 Zhx1 ENSRNOG00000006412 ENSRNOT00000008454 3 1 1 82 7 97937671 97937691 CCAAGTACCTCATTTGAAGGG 59 97923390 97937627 GCACAACTCCAATCACCTG 59 NA InUTR Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 3 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532382 22534333 CTTGTAGACGTTCCTCTGCT 60 NA Rattus norvegicus 81 Scn7a ENSRNOG00000029342 ENSRNOT00000041096 1 1 1 80 3 52784872 52789160 GAATGAAGGTGGTTCTGAGAG 59 52784812 52784830 GCCAGATCATTAGGCAGAC 58 NA Rattus norvegicus 81 Ficd ENSRNOG00000059799 ENSRNOT00000082809 3 1 1 127 12 48662167 48662931 ACTGGAGCCACAGATTCTG 59 48662058 48662076 AGACTGAGACCCATTTGGG 59 NA InUTR Rattus norvegicus 81 Wrn ENSRNOG00000015440 ENSRNOT00000058805 2 1 1 80 16 62599084 62602258 AAATAGTGTTCAGACAGACCTC 58 62602299 62602317 GCTTTGTTCTCCATCTCCT 57 NA Rattus norvegicus 81 Olr104 ENSRNOG00000015876 ENSRNOT00000021254 2 1 1 60 1 168587152 168587170 CTGGCTCTCCATTCCTCTG 60 168587110 168587128 GATCAAGCTATTCCCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 1 2 2 80 7 98194923 98194941 GCAGTAAAGGACCAAAGGC 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Ctdspl ENSRNOG00000046257 ENSRNOT00000075793 1 1 1 168 8 127712685 127716174 ATACACCAGGTGTACGTGC 60 127719866 127719884 ATTCTCTGAAGAGTCGGGC 59 NA InUTR Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069,ENSRNOT00000012258 1 2 2 80 5 154222068 154222513 AAGCAGACTGAAAGGTGAC 58 154222006 154222027 CATTTCTAGATTGAGGGTCTGG 58 NA InUTR Rattus norvegicus 81 LOC100911649 ENSRNOG00000022798 ENSRNOT00000029573 3 1 1 80 16 12977075 12977237 TTGAACAGGACATGAGAAAGC 59 12977279 12977297 GCACCAAGTTGTTCACCAG 60 NA Rattus norvegicus 81 MGC94335 ENSRNOG00000015983 ENSRNOT00000021533 2 1 1 80 9 64101581 64103664 CAGTGCGAGTTATGAATTTCAG 58 64103705 64103723 TTTGAGTGCTCAATCCGTG 59 NA Rattus norvegicus 81 Cenpw ENSRNOG00000042944 ENSRNOT00000065677 2 1 1 81 1 29918025 29918046 GAGTCTAGGACAAATGCTTGTG 59 29918087 29919355 TCAGAATTACCTTTGCTGCC 59 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 1 1 1 80 8 60816630 60816648 TCTTCATCCTGCTCTTGGT 58 60816085 60816587 CATTCTCCACCTTTGCTCTG 59 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 2 1 1 80 8 60816631 60816649 GTCTTCATCCTGCTCTTGG 58 60816086 60816587 ATTCTCCACCTTTGCTCTG 57 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 3 1 1 81 8 60816630 60816648 TCTTCATCCTGCTCTTGGT 58 60816084 60816585 TCATTCTCCACCTTTGCTC 58 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 1 2 2 80 9 61343191 61355100 CGATGTGAACATTCAGAGTAAGG 60 61343133 61343151 GTTTGTGACCGTGTGAACC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 3 4 6 105 5 158103015 158103034 GTAATCCAGTTTGTGCCAGC 60 158103101 158105127 GTTTAAAGGTGGGCACACTG 60 NA Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 3 1 1 80 2 33918546 33920659 TGAATTCACAAGAAGTGCCTG 59 33918486 33918506 AAGTCAGTCTATTGCCATCCA 59 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 1 2 2 80 2 30536865 30536885 ACTATGAAACCGACTACACGA 59 30534398 30536826 TGATAGGTGGATATTCCCTGAG 59 NA Rattus norvegicus 81 Cpt1a ENSRNOG00000014254 ENSRNOT00000019652 1 1 1 80 1 218615455 218619081 ATTTGTGGGAGTATGTCATGG 58 218619122 218619141 GGTTGGTGTCTCCTTTACAG 58 NA Rattus norvegicus 81 Pdcd6ip ENSRNOG00000008981 ENSRNOT00000012114 2 1 1 80 8 121956149 121956169 GGACCCTCAGTCTTATTATGC 58 121954266 121956109 TGGCATCCTTCATCTTATCTC 57 NA Rattus norvegicus 81 Man1c1 ENSRNOG00000017087 ENSRNOT00000022956 1 1 1 80 5 152812427 152812446 GAGCTGAAAGAGGAGTTCCA 60 152810551 152812386 CAAAGATGCTTCTCCACTCAC 59 NA Rattus norvegicus 81 Mrgprf ENSRNOG00000013426 ENSRNOT00000017948 1 1 1 80 1 218470102 218474422 CCAGAACAAGATGTGTCCT 57 218474466 218474484 GTGGCAATCTGTTCAATGG 57 NA Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 1 1 1 80 8 23439176 23439196 GACCCAAATACAAGATGGGAC 59 23439236 23446010 TCTTCGTAAGATACCTGGCTG 59 NA Rattus norvegicus 81 Carns1 ENSRNOG00000018603 ENSRNOT00000025092 1 1 1 83 1 219421233 219421251 CTTGTGCATTCTGGGTTCC 59 219420904 219421187 CAAAGGAGCATGTTTCCAGG 60 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 2 3 3 80 16 54174585 54183969 TGCTGACTATGCAAGGAGAC 60 54184012 54184030 TTTCGTATTGTGCGAAGCG 60 NA Rattus norvegicus 81 Rcn2 ENSRNOG00000015780 ENSRNOT00000021817 3 1 1 80 8 60721153 60724233 TTGACTATATGACGGAGTTCG 58 60724274 60724293 CTTCCAGACTAACAAACCCA 58 NA Rattus norvegicus 81 Spsb4 ENSRNOG00000012862 ENSRNOT00000017363 1 1 1 96 8 104891723 104891741 CTATACCCGGTGGTGAGTG 59 104842285 104842303 ATAGGTCCATCAACGGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fndc7 ENSRNOG00000020421 ENSRNOT00000027690 2 1 1 80 2 211663434 211663453 TGAAGCTTACTTTCTGCCCA 60 211656653 211659381 TCCCTCTGTAAATCACCATCC 59 NA Rattus norvegicus 81 Olr142 ENSRNOG00000016954 ENSRNOT00000022740 3 1 1 60 1 169229500 169229521 TGTCTATTTGTTTGTACCTCCC 58 169229461 169229479 CTCCTTGGTCTTCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncr1 ENSRNOG00000018458 ENSRNOT00000025080 2 1 1 80 1 73181069 73181197 TCAGGATTGCAGAAGGACTC 60 73181008 73181026 CACGATTATGCATGCCAGG 60 NA Rattus norvegicus 81 Cyp11a1 ENSRNOG00000008074 ENSRNOT00000010831 2 1 1 80 8 62799856 62801710 CTGTTTAAGAGTTCAGATGCCT 59 62801751 62801769 GTTCTTGATGGAGTCAGGG 58 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 3 2 2 82 8 21453156 21453176 ATTTAAACCCAGCCTGATCTC 58 21452367 21453115 TTTCCCATTCTTGGAGAATTCC 59 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997,ENSRNOT00000072577 3 2 2 80 2 34559322 34559341 AATTTCTGTGACCCTGACAG 58 34559384 34568087 AATGAACCATTCAGGTGGG 58 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 1 2 2 80 5 70292370 70302007 TTGGGATGGGATTTATTTGTGG 59 70302046 70302066 TTCCATAGCTGTCGTATCCTG 60 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 2 2 2 80 5 70338046 70338064 CTTCCGAGTACACTCTGAC 57 70338107 70345598 AGAATGGAATAGGTGCACTG 58 NA Rattus norvegicus 81 Ackr2 ENSRNOG00000019472 ENSRNOT00000026343 2 1 1 91 8 130538764 130541013 AAGCATCAGAACTCGAGAC 57 130541067 130541086 CATAGTCGTAGATGGAGCTG 57 NA InUTR Rattus norvegicus 81 Alg14 ENSRNOG00000011528 ENSRNOT00000015354 1 1 1 80 2 224886702 224886722 CGTGTTCACTACCTTGTACTC 59 224886763 224930490 CCATTACACAGCACCAAGTC 59 NA Rattus norvegicus 81 Ccser2 ENSRNOG00000022781 ENSRNOT00000016494 2 1 1 80 16 14142616 14142634 ACCATTACCACCTTAGCCA 58 14131507 14142576 ATTCTCTATAAGGAGAGCCTCTG 59 NA Rattus norvegicus 81 A4gnt ENSRNOG00000042649 ENSRNOT00000039690 1 1 1 80 8 107859713 107859731 TTTCTTCGTGCCTTTGGAC 59 107859773 107865188 CTACTGCTGTTGACTTTGGTG 60 NA Rattus norvegicus 81 Dpy19l1 ENSRNOG00000026589 ENSRNOT00000036738 2 1 1 80 8 25591195 25592215 GATGCAGGTCTAAGAGCCA 59 25591133 25591153 CAATTCCTTCTTCACGTCCTC 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 1 1 1 89 2 52171511 52171532 CTTACTTCTCTATCGGTTTCCT 57 52171321 52171461 TTTCCTCCGCCAATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980,ENSRNOT00000012545 1 2 2 80 8 122115282 122119371 CCTATGCATCACTAGAGGAC 57 122123056 122123074 TAGAAAGCTTGGCTCTCAC 57 NA Rattus norvegicus 81 Isl1 ENSRNOG00000012556 ENSRNOT00000017305 2 1 1 81 2 48497613 48497631 TTGGACGAAAGCTGTACCT 59 48494639 48497569 ATTTGATCCCGTACAACCTG 58 NA Rattus norvegicus 81 Zmynd19 ENSRNOG00000007752 ENSRNOT00000010270 3 1 1 84 3 2162235 2167197 CTCCAGCAAACAAAGGGAG 59 2167240 2167263 GACAGGGAATTGTTCTTCTATAGG 59 NA Rattus norvegicus 81 Pltp ENSRNOG00000016488 ENSRNOT00000022594 3 1 1 80 3 161312403 161312421 TCTTTGACTCTGCCATGGA 59 161312246 161312360 GATCATTTGGCACCTTGTCC 60 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 1 2 2 80 2 52397471 52397491 TCTGGAAAGAGTGAATTCGTG 58 52397530 52402884 CGTTTAACATGAAGGATGACAG 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 2 2 2 80 2 52397470 52397491 TTCTGGAAAGAGTGAATTCGTG 59 52397529 52402883 GTTTAACATGAAGGATGACAGC 58 NA Rattus norvegicus 81 Shb ENSRNOG00000011503 ENSRNOT00000015338 1 1 1 80 5 61037194 61037212 AAGCAGGAAAGGGTGAGAG 59 61004009 61037152 TCTCTTGCCTCTGGAATTCTG 60 NA Rattus norvegicus 81 LOC691110 ENSRNOG00000038477 ENSRNOT00000033209 3 1 1 84 8 61903286 61903306 CTTCAGGATAGTGGTCTGGAG 59 61903352 61904789 GTAGATGAGCTGGAGCTGG 60 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 2 2 2 80 20 4379800 4379995 CAAAGAAAGTTTGGGAGTGTG 58 4379740 4379759 TACACTGGTTGACTGTAGGA 58 NA Rattus norvegicus 81 Spata21 ENSRNOG00000009058 ENSRNOT00000012147 1 1 1 80 5 159636746 159636766 AGTAGAGAACTTGGAAGTCCC 59 159636807 159637348 AGATTGGCAGCATAGTTCTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279,ENSRNOT00000055030 3 2 2 80 3 176849327 176849345 GGAGTCCGTACCCTTATCC 59 176849387 176849571 TGGGAATGGAATTTGCATCTC 59 NA Rattus norvegicus 81 Rnf26 ENSRNOG00000007720 ENSRNOT00000010134 2 1 1 60 8 48448859 48448879 GCCTATGTGGTCAATAGTCTG 58 48448819 48448838 GGGAGAAGAAGTTCTGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 3 3 4 81 2 53166095 53179746 ATGAAATAGTGCAACCTGATCC 59 53166035 53166053 ATATCTCCACGGATCCCAG 58 NA Rattus norvegicus 81 Timm10b ENSRNOG00000000320 ENSRNOT00000000351 2 1 1 187 20 48309840 48309858 CTAGCTAGCTGTCCCTGAC 59 48300213 48309517 TCCCAGTATCTCACAGCAC 59 NA InUTR Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 1 2 2 80 5 79398798 79400909 AGAGTGTGATACAGCTCTGG 59 79400950 79400970 TCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Mpi ENSRNOG00000018898 ENSRNOT00000025783 3 1 1 80 8 62324501 62324764 GAAGATAGAGGTCCCTGGC 59 62324439 62324457 CCTTGGACCAACAGAAGGA 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 2 2 2 80 8 132526436 132526866 CATAGATTTCACAGGTCCTACTC 58 132526906 132526924 GACTTGCTCATCTTCTCCC 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 1 1 2 80 20 49319425 49325062 CCCTGAAATGGCATTATCCA 58 49325104 49325123 GAAATGTGATGTTCCAAGGC 58 NA Rattus norvegicus 81 Olr1705 ENSRNOG00000048714 ENSRNOT00000071933 2 1 1 60 20 1021941 1021960 AGTGATGTCTTATGACCGCT 59 1021981 1022001 CATGATGACCTCATAGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367195 ENSRNOG00000031912 ENSRNOT00000050963 3 1 1 60 8 132026817 132026835 ACGAGGAAGCTCATCTGTG 60 132026775 132026793 GGTACATCTGTCTGCACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3 ENSRNOG00000001217 ENSRNOT00000001632 1 1 1 60 20 11490090 11490108 ATGAAATTGCCTGCCACAC 59 11490132 11490150 ACCTGGATCAGAGGTTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl1 ENSRNOG00000000549 ENSRNOT00000000660 3 1 1 60 20 41084300 41084318 GCTTCTTCACCTGGTTCTC 58 41084341 41084360 ATAATCTCGGCGATCCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911156 ENSRNOG00000000582 ENSRNOT00000000710 2 1 1 80 20 48755567 48756781 CTCCCACGTATCCAGATACG 60 48755506 48755525 TGGCGATTTCAGAAAGATGC 59 NA Rattus norvegicus 81 Olr1693 ENSRNOG00000000749 ENSRNOT00000000976 2 1 1 60 20 831225 831245 TCTGCTTCATCTCTGTTACTG 58 831185 831205 AAACCATTGTCCATGAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364116 ENSRNOG00000030426 ENSRNOT00000050041 3 1 1 60 20 8484550 8484569 TCGTTTCCAGATGAGAATCC 57 8484590 8484610 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr873 ENSRNOG00000046516 ENSRNOT00000071833 1 1 1 60 8 20994509 20994528 ATCATCCTGGCTGTCAACTC 60 20994468 20994488 TGCAGAGGAAGAAGTACATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomgnt2 ENSRNOG00000019492 ENSRNOT00000026363 2 1 1 60 8 130616820 130616838 CTGAAAGGCTGAACGTGAG 59 130616778 130616798 AAGACCAGAATGTATTCCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044583.1 ENSRNOG00000060674 ENSRNOT00000091856 2 1 1 81 20 11556218 11556236 GTCTGTCTGCTCTGATGCT 60 11556155 11556173 ACAGCTACAAGGCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vdac3 ENSRNOG00000019277 ENSRNOT00000026197 2 1 1 80 16 74303672 74305521 CCAAACACAGGGAAGAAGAG 59 74305564 74305582 TATGTCAACGTTACTGCCC 58 NA Rattus norvegicus 81 LOC100910382 ENSRNOG00000050612 ENSRNOT00000073543 3 1 1 60 20 734857 734877 ATCCTTCTCTGTCACAATTCC 58 734898 734917 TATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000066600 1 1 2 80 20 1053287 1108980 GAAATGCTTAGAGATGAGTGTC 57 1053228 1053247 AACTTGGTAAATGCAAAGCG 58 NA Rattus norvegicus 81 Clic2 ENSRNOG00000000728 ENSRNOT00000000955 2 1 1 90 20 295597 304760 TTTGTGAAGGCTGGAAGTG 58 304811 304832 ATTTAACTCCCTTAAGCCAGAG 58 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 2 2 2 99 16 75146134 75147255 CTTACCATGAGCCTGGACC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Smtnl1 ENSRNOG00000007516 ENSRNOT00000009903 1 1 1 80 3 72211356 72211375 TTGACTATGCAGAGCTGGAC 60 72207505 72211313 AGTCGGCTAGTTTCTCTGC 60 NA Rattus norvegicus 81 Uchl3 ENSRNOG00000046120 ENSRNOT00000028960 3 1 1 80 3 171121584 171121980 GATGCACTTTGAATCAGGGTC 60 171121524 171121543 TGTCTGGCTCTTTCTTCAGG 60 NA Rattus norvegicus 81 Tmem82 ENSRNOG00000011970 ENSRNOT00000016176 2 1 1 89 5 160171400 160171419 CTGGGTATCTTTGTCTCCCT 59 160171086 160171348 TGGAAAGCCCTGTATCTGG 59 NA Rattus norvegicus 81 Asap3 ENSRNOG00000049714 ENSRNOT00000072864 1 1 1 80 5 154578779 154578798 GAACAACATCGTCTCCTTCC 59 154578838 154579796 AGATGCTTCTTGGAATCATGTC 59 NA Rattus norvegicus 81 Defb1 ENSRNOG00000013768 ENSRNOT00000018427 1 1 1 60 16 75309002 75309020 CTTCTCCCAGATGGAGCTG 60 75294614 75294632 TTGATCTGTTCTGCGTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Col15a1 ENSRNOG00000039197 ENSRNOT00000017217 3 1 1 80 5 64519261 64519281 GGATATCCCTCTGGAAATGGT 59 64519431 64522133 CCTTTGGGTCCCATAGGTC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 3 2 2 81 3 172174696 172175474 GACGGAGTAGACGAAATACAG 58 172175515 172175535 AATGCTTATCATGAAGGCTGG 59 NA Rattus norvegicus 81 Bag4 ENSRNOG00000042560 ENSRNOT00000066901 1 1 1 80 16 71075131 71075153 AAGAAGTAGAGGAGTTTGGGA 58 71075192 71075213 GTTCTAACAGTTCCTTTGTCAG 57 NA Rattus norvegicus 81 Bmp7 ENSRNOG00000053384 ENSRNOT00000084990 3 1 1 81 3 170929760 170954994 TTCGTCAACCTAGTGGAGC 59 170929697 170929717 TCTTGGAAAGATCAAACCGGA 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000038809 1 1 3 80 3 150877549 150877678 TAACAAGGTCGTCACTCCTG 60 150877488 150877508 TCATCCAACACCTCAGATTCC 60 NA Rattus norvegicus 81 Pramef17 ENSRNOG00000042820 ENSRNOT00000048366 1 1 1 80 5 162440781 162441561 TGAGTTACTCAGGTGTCTGG 59 162440720 162440740 GACTCCAAATCTGACTGAGAG 58 NA Rattus norvegicus 81 Defb38 ENSRNOG00000032089 ENSRNOT00000050296 1 1 1 86 16 75058625 75061685 CAACCAAGCTACTGATCAGG 58 75061733 75061752 GAAATAGACAACCATGGGCA 58 NA Rattus norvegicus 81 Defb11 ENSRNOG00000038151 ENSRNOT00000058063 2 1 1 81 16 75149579 75156274 CTATGACACTCCAGTTGTTGG 59 75149518 75149539 GTAACAGTACCCTCCCTTACTG 60 NA Rattus norvegicus 81 Prosc ENSRNOG00000013751 ENSRNOT00000018369 3 1 1 80 16 69168898 69168916 GGCAGAAGAAAGGTTCTCC 58 69166694 69168854 GAAGGCCGTGTTTACTGTC 59 NA Rattus norvegicus 81 Defb21 ENSRNOG00000023154 ENSRNOT00000031613 3 1 1 92 3 148047686 148048769 GTGATCCCAGACTATAGTGCT 59 148048822 148048841 TGTTTCCATGACCATTTCCC 59 NA Rattus norvegicus 81 Defb50 ENSRNOG00000033972 ENSRNOT00000046156 1 1 1 96 16 75249858 75261953 TTGTCAAAGGTGTTGGCAG 59 75249780 75249798 TAGAAAGGGCAATTGTCGC 59 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 2 1 1 62 3 176441402 176441421 TTTGTGGAAAGAATCCAGGC 59 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Fnta ENSRNOG00000014462 ENSRNOT00000019594 2 1 1 80 16 70844379 70846089 ATCAAGTTTGGCACCATAGG 58 70846132 70846150 GGATATCGGCGATGAACTC 58 NA Rattus norvegicus 81 Defb52 ENSRNOG00000038129 ENSRNOT00000043486 1 1 1 80 16 75574263 75574379 TTCTTCAACAACGATTACGGG 59 75574419 75574439 ACGAGTACAGTTTGTTCTCCT 59 NA Rattus norvegicus 81 Cln8 ENSRNOG00000012565 ENSRNOT00000016756 1 1 1 147 16 79831880 79838178 CCTGAATGCAGGTTGAGGA 60 79831751 79831769 ATGGTTGCTCACAGGAGTC 60 NA InUTR Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547,ENSRNOT00000084299 2 2 2 80 3 66839179 66839200 CCTACAGACTTATGCAAGAGGA 59 66836275 66839140 CTAAGTTCCGAAGATCCCTCC 60 NA Rattus norvegicus 81 Mrps31 ENSRNOG00000011839 ENSRNOT00000015790 3 1 1 80 16 74483823 74483843 TTCAGTTTGACGAAGAAGTGG 59 74481256 74483784 CCTTGAACAAACATTTCCTCCT 59 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 2 2 2 86 16 66230931 66230950 AAGTGTCAATTCGAGAGGGA 59 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 2 2 2 80 3 176768442 176768460 AGACAGCAGAGCTAACCTC 59 176762332 176768401 ACATGTTCATCGTACTGAACAC 59 NA Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163,ENSRNOT00000089447 1 2 2 80 16 82041428 82045144 CATCAAGCAGGGTTATGAAGAC 60 82041369 82041387 TGTTGAATGAAGTGCACGG 59 NA Rattus norvegicus 81 Tnks1bp1 ENSRNOG00000009195 ENSRNOT00000012209 2 1 1 81 3 72481959 72481977 CTAAGTCCTGCAAGGTCCC 60 72482022 72482273 GATCCTTCTGACCCTGAGG 59 NA Rattus norvegicus 81 Bpifb3 ENSRNOG00000013398 ENSRNOT00000055349 2 1 1 80 3 149409751 149409771 CCTCTTCAACACTGTGTTTGG 60 149409812 149411224 TTTCTGGGAACCATCTCAGG 60 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 1 2 2 80 3 151347875 151349518 TGTGTTTAAGGATCGCTGG 58 151349559 151349580 CAGAATTGTTCAATCTGCATGG 59 NA Rattus norvegicus 81 Olr716 ENSRNOG00000046907 ENSRNOT00000074631 1 1 1 80 3 78621120 78621139 ATGTACTTCTTCCTTGCCTC 57 78620820 78621079 CAAGTCTACAATCAACTTGGG 57 NA Rattus norvegicus 81 Entpd2 ENSRNOG00000013102 ENSRNOT00000017829 1 1 1 80 3 2621642 2622513 AGACATGGACTGAACTTCAGG 60 2622553 2622573 GTATGAACATGGCTACAGCAC 60 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 3 1 1 80 3 160608167 160608185 CCCTCTACTCACAGTGACC 59 160607963 160608126 GGTTTGGATAAAGCCTTCTTCC 60 NA Rattus norvegicus 81 AC114391.2 ENSRNOG00000061751 ENSRNOT00000058039 3 1 1 60 16 75498852 75498871 GAGATAAAGGCACTGCTCTC 58 75498309 75498327 GTTCCGATTCTGCAAGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Pcid2 ENSRNOG00000025222 ENSRNOT00000044085 3 1 1 80 16 81764106 81765974 TGATAGTCCAATCATTCCTTCG 58 81767632 81767650 GTGCTACTGCGTACATGAC 59 NA Rattus norvegicus 81 Mir147 ENSRNOG00000036445 ENSRNOT00000054556 3 1 1 61 3 114775351 114775370 TAGTGGAAACACTTCTGCAC 58 114775394 114775412 GTAGCAGAAGCATTTCCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 1 2 2 80 3 80079252 80079271 GCGACTTCTCTTCTTCAAGG 59 80079314 80079435 AGCTCATGGAACTTGTCAC 58 NA Rattus norvegicus 81 Zmiz1 ENSRNOG00000010488 ENSRNOT00000014004 3 1 1 80 16 1949385 1950794 TTCACTGGATCTACTGCCG 59 1950838 1950856 CTATTGCTTGGAAGGTCGG 58 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000071923 1 1 2 80 19 36278300 36326971 AAGGCTATAAGTACATAGTGACTGG 60 36278244 36278262 ATCTAGCCACCAACTTCCC 59 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000082726 2 1 2 80 19 36270937 36326961 GTACATAGCACCCTTCCTACC 60 36270877 36270898 TGATTCATCAGATGAGGGAGTC 60 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 1 1 2 80 2 212564683 212564704 CTACAGTTTCCATACAAGGAGC 59 212564745 212582939 TTTGGGACTTAGCAAGCTG 58 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 3 3 3 141 5 171571046 171616776 AGCTTGTGAACACTCTTGC 59 171616881 171616899 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 2 2 2 108 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757594 33757612 ACTGTCTGCTTCTAGCAGG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 1 1 2 120 2 143928167 143929006 CAGGGAAGACTACGATGGG 59 143926779 143926798 ATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000091513 1 1 3 107 16 2152015 2158119 CTTTACAAGAGCGCTTGCT 59 2142282 2142300 CCACTTTGGTTAGATGCCC 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000089166 1 1 2 112 5 136086853 136086871 GACTCTCAAGACTGCCCAG 60 136074951 136083995 TCGAAGAGTCTTCATACTGCA 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 2 3 3 147 1 170471305 170471466 AACTGAGAAACTTGCGAGAC 59 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000091612 2 1 3 103 15 42664303 42664321 GATGCTCAACACCTCATCC 58 42664388 42664407 GAGACCCGAAGTACTGGTC 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000015784 3 1 2 84 1 161995776 161995795 TGTGTCACCAGTTCATAGCT 59 161997558 162001506 GCTTCTGCATAAGAGATGATTAGG 60 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474 2 1 2 81 4 179410770 179410788 CAATGCTGACAGACTCCAG 58 179412625 179417759 AGTTCCTCACTTGTTTCTGG 58 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000085527 1 1 2 86 5 136683692 136690062 CAGAACAGAATGGTGCTGTG 60 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 1 1 3 88 2 189440270 189450009 CTTGGAAGATAAGCTGAAGTGC 60 189450058 189450076 ACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 2 1 3 89 2 189440269 189450008 ACTTGGAAGATAAGCTGAAGTG 59 189450058 189450076 ACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023605 2 1 3 82 2 189440261 189448844 CATTGATGACTTGGAAGAGCG 60 189448888 189448906 CATGCAGCGTTAGCTTCAG 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000073659 2 1 3 92 9 8091224 8091244 TTCTATGCTGCTTATCTGGTC 58 8093278 8093301 TGAGTGCTATTGAAGATGGC 58 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559 3 2 3 100 17 10617655 10618280 AAATCCAACAGCTGCATCC 59 10611063 10611081 TCGTCCAGGTAAAGTTTGC 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817,ENSRNOT00000002220 2 2 7 107 11 46253392 46288168 AAGAGTCAAACCTGCTCCC 60 46248784 46248803 GTATGCAGGGATCCCTTAGG 60 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161 3 1 5 94 1 87650231 87655732 GTGTTCAAGCAGCTTTGTG 58 87655790 87655808 CTGTATAGCGACCTCTGCT 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 2 2 3 80 5 22747113 22749238 GGCTAAAGTTAAAGAACCCACC 60 22747054 22747073 CTTCCCTCTTCAGTCTTGCT 60 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000050010 2 1 2 101 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224321273 224340266 CTAGCTGTTGCCCTTAACG 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 1 2 2 80 1 205734242 205734262 CTCCTTGTGAACTGCTTAGAG 59 205734301 205736868 CAACATTGCTATTCTGACTGCT 59 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 2 1 1 60 1 81501869 81501888 AAACTCAACCTCACTTTGCG 59 81502203 81502221 TGTGCTCATACGCACTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 2 1 3 116 4 78382321 78383622 ACTATAGTTGAAGGGACTCTGTG 59 78383698 78383716 AGTTCCTCAAAGCCATGGT 59 NA InUTR Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 1 2 2 80 X 39825770 39825788 GTTTCACAGTCTGCTCACC 59 39825827 39830745 GGATTTAATATACATACCCAGCCC 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 1 2 3 80 8 90932337 90934405 GTCTGAATGTGAATGGGAAAGAG 60 90932279 90932297 ACCAGCTTCTCTGTTCTCC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 3 2 2 80 3 110483716 110484302 CTACTGAGGTGGATATCTGGTC 59 110484343 110484361 GGGAGTCGCTGAAGTAAGG 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000089904 3 1 2 80 9 9143109 9143127 AAGGCAGAAGGAAGATGAC 57 9142326 9143065 TTCCTACCAAATCCAAGCC 57 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 1 2 3 80 5 48057257 48058373 AGAAACGTCAGATGTCATTGG 59 48057197 48057215 CCGAAAGTCTCAACTCCAG 58 NA Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 1 2 2 80 X 43628856 43628877 CTTTGTGATGAGTGATTACCGA 59 43629007 43629255 CGACACTTCATAGCAACCTG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 1 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413154 39413173 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000078838 1 1 2 87 14 84703623 84705230 CAAACGTGGAATTGTGGGA 59 84703554 84703572 GACTGGGTTCAAAGAGCTG 59 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 2 2 2 80 4 118553924 118553942 GTCTGATTGAGATCCTGGC 58 118551879 118553880 TCCTTCCATATTGCTGCTG 58 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 1 1 2 82 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715992 38716011 TTAGCTCTCATAGCAGAGGC 59 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 2 2 2 80 1 171974084 171974102 GCTAATTCGCCACATCACC 59 171972978 171974043 ATATCCTCTTCTGTCTGGTTGG 59 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 2 2 2 80 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882994 39883014 AGAACTAGAAGCCTCAGTGAG 59 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000022203 2 1 2 86 17 15852660 15854039 TTACACTTGATCAGACCTACTG 57 15854085 15854104 CTACTTGTTGCTCACTCAGG 58 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108 3 1 2 92 9 47176713 47178140 CCCAGAATGATGGAAAGCTC 59 47178195 47178213 CAAAGTACTCCACAGAGCC 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386 3 3 10 82 2 231232010 231232932 TGTCAGAGGTGACTTTGTCC 60 231231947 231231966 GACTCTACGGCCTTCTACTG 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 1 2 2 80 17 16260954 16260973 AGAATGACGTGGAAAGACTG 58 16261014 16261391 GTTTGCTGTTCTTGTACTTCC 58 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 3 2 2 80 17 16257053 16257461 TGGAAGCATTCAAAGGTTCTC 59 16257500 16257521 CACCATTGAGAATCTTAGCTCC 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061 3 1 2 80 13 96231017 96231038 TCAGAGGACGAGGAAATAATCG 60 96226167 96230976 TCACATGGACAGAACCCTG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 2 4 7 83 1 215610468 215610576 ACCTGAAGAGTGTGATGCT 59 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 2 2 2 80 2 188008255 188008421 GAATTCCCATGGGATTGAAGAG 59 188008461 188008480 TCCACATTGGACAACAACTC 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010 1 1 2 80 6 11058410 11058507 AATACTCCAATACCCGGCAG 60 11058349 11058368 ACTATATTGCGGGAGGTCAG 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878 2 1 4 80 9 117657625 117657643 GGAGTCTCTGCTGATTCTG 57 117657685 117659903 TTGTTTAGTCTCTAGGGTCGA 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 2 2 2 81 1 174370117 174372221 TCTGTCACAATCAAGGTTACC 58 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 3 2 2 80 1 257403591 257403686 AGGGTTTGCAAGGTTTCTG 59 257403729 257403748 TGCAGGTCTTTCTTGTTCTC 58 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000085613 3 1 2 119 6 27561412 27561430 GGGTTATAAGCCAAAGGCA 58 27560600 27561100 GGAGTAGCATATGTTGGTCTG 58 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000084258 3 1 2 80 6 83426442 83426463 ACATCTCAAAGAGCACATACCA 60 83431892 83432124 TGGCAGAATCTGTGTTTCCT 60 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000041253 3 1 4 84 10 39323284 39323302 AGCTGGAACTGGAGAACTG 59 39306471 39323238 AATTTCTGTTCCTCTGTCACG 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617 1 1 2 80 20 5987495 5987513 AGATAATGCGTCTGACGGG 60 5987554 5988758 ACTGAATGTAGTTTCTTGCCTC 59 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672 1 1 2 81 6 1657447 1668263 AGGAGAAGAACTACCACCA 57 1668308 1668326 ATCTCAGAAATGCTGGTGG 58 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678 1 1 2 108 1 89391704 89391722 CTGGATGGAAACAACGAGG 59 89388045 89388630 AGAGCCAATCTTCCAAGGG 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 3 4 4 81 6 8257525 8257543 AAGGTCTCAGATGAAGCCG 60 8257585 8260436 ACTTCTGCATGATTTCTTCCAC 59 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 1 2 2 80 9 53505064 53505084 CTCAACAGACCCAAGTTACTC 58 53503299 53505022 TCGTTCCCACTTCTTTAGC 58 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188 1 1 2 80 11 47193059 47193079 CTTCTGCTATCTGTTTGTGGT 58 47193120 47218325 GTCTCATGGTCCAAGTACTC 58 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 2 2 2 82 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054947 TAGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 3 2 2 80 20 7772650 7772668 CTTCGAAGATGGTCAGCCT 60 7772712 7774763 GGGTCATAGCCCTCTTTGG 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 1 2 2 80 14 86379273 86379583 GAAAGGCTAAGAAGGTGAAGAC 59 86379214 86379232 GCTTTGCTGTGGGTTTAGG 60 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000056818 3 1 2 80 8 96050144 96050165 CATATGAGCATGTTCTTTCCCT 59 96049906 96050105 AGAGTTGCCTGAAATACTCGT 60 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 2 1 1 60 10 40193201 40193219 CAAGGAATCCACACTGACC 58 40184576 40184597 CTGTAAGAAGATCTTTCCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 1 2 2 80 13 89587354 89588670 GAAAGACATGATACTGTCAGCA 59 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604 2 1 2 81 3 44081229 44081247 AGAAGGGAGATATCGCCAG 58 44068096 44081186 TCCAAATGAGAGTCTTTCCTG 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724 1 1 2 80 6 7882909 7882929 GCATTCGCATTTACTTGACAG 59 7882971 7886520 ACGGTGTTATAGGTTTGGC 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724 2 1 2 80 6 7882913 7882933 TCGCATTTACTTGACAGTAGC 59 7882972 7886524 GATGACGGTGTTATAGGTTTGG 59 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000073048 3 1 2 82 9 10164921 10164941 CTGTGCTTTGGTATACAACCA 59 10164770 10164880 CTGTGGTCCATGTGATATTGTC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 1 6 6 83 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282646440 AGGAAGCATCATTTGTGCT 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 2 1 2 70 X 53234811 53234829 AGTACCTTGAGGAGCAGGA 60 53234621 53234639 TTCTCTGAAAGCCAGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000084505 1 1 2 80 15 39838931 39838951 GAAACTCATGATGAACCTGCT 59 39838992 39869934 CCCAGATGAGCCTTAAAGAC 58 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 1 1 1 60 12 11734961 11734979 TGGTTGGGTTCGACTACAG 59 11735005 11735024 CGCTTTCCCTTTCTTATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239 3 1 2 84 6 21077693 21091615 GAAGTTGGTTGAGCTCTGG 59 21077311 21077330 GTCTTTGCACTGTTTGTGAC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 2 3 3 89 12 7504846 7504864 TTCCCTGTGTCTTGTCGAG 59 7504917 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 2 2 5 81 16 19727744 19727762 AGTCCTGTCACTCGAAGTC 59 19727807 19730706 TATGCAAATCGCGGTACAG 58 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 3 2 2 80 17 42726722 42736585 TCTGAGGAGTTTGGGTATGC 60 42726661 42726680 AGTGAAATGGTGTGACAGGT 60 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 2 1 1 89 14 107349705 107349723 CGAAAGAACAAGTACCGCC 59 107349876 107349894 GCTTTGAAGGATGGCACTG 60 NA DesignNoJunction Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000088322 3 1 2 80 10 29034067 29034087 AAGATGACCAGAGGACTGG 58 29034132 29034150 TTCATCAACTTCTGCAGGG 58 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 2 2 4 80 3 57584383 57584402 AAGAGGAAGAAGACGAAGCT 59 57572313 57584343 CAAACTTAACTTGCTCTTCTGG 58 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 3 2 2 80 2 94709551 94720814 CTGGTGGGAAATGAGTCAG 58 94709489 94709509 GCAATAGGAGTTCTCATTTGG 57 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396 3 1 2 127 1 221261127 221261146 AGAAGATACTCCAAAGCGTC 58 221260411 221260906 TGAAACTATTGTCACAGGCA 58 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458 3 1 2 80 12 13524348 13526532 CCTGACAGAAACACATAAACCTC 60 13526570 13526590 AATCTGTTCAGATCTTGCCAC 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 2 1 2 82 15 41104123 41104145 CAAACCTAGTAGGCTATCTACC 57 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 1 3 3 80 5 151051031 151052226 CATTTGACAGCCATGAGGAG 59 151050970 151050990 TAAGTTCCAGGTCTTGCTCAG 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144 2 1 2 82 2 118932323 118932343 ATAGCAACCGAGGATCTGG 59 118932388 118932407 TTCATATGCCTCCGAGACAG 59 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 3 2 2 93 3 138387919 138388651 GTTCACACCAAGACCACAC 59 138387844 138387862 TAAGAGTGTCATGCAGCCA 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 3 2 3 109 3 72432627 72432844 TTCTGTCCAGAGAATGAAGAG 57 72431991 72432010 AGAACAGAGCTGTAGTTCAC 57 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919 1 1 2 82 3 7746888 7752843 CTTTGGCACTGTGACTATCC 59 7746825 7746843 GAGGAGATCTGGGCTTGAG 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000072033 2 1 2 84 9 10021813 10021831 TGCTTACTACGGACAGACC 59 10021879 10022885 ATTTGCTTCAGTTGCCTGC 60 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 2 2 2 80 2 178594127 178597006 CAGCCAGTATGATTTAGACTACG 59 178594069 178594088 CTGTAGGCCACAAAGTAGAC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 1 2 2 102 5 156288488 156290095 CAATGTGATCCAGGTGGAC 58 156291407 156291427 GTAGTTCAGATAGCCAGTCAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 3 1 2 85 8 55110318 55110336 TCTAGAACGGGAGCTAGAG 57 55109465 55110272 GACTGTTGTAATTTGTCACCTC 58 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020407,ENSRNOT00000041921 2 2 4 80 3 8487989 8494331 CTCGTGATGATGTGGATCGA 60 8494374 8494392 GGTTGGTGCTTTCAGACTG 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000077994 1 1 4 80 17 27506920 27507205 TCAGATCATGCAGAGTAGAAGAG 60 27510691 27510710 GATCCCACCGATCTCTTCTG 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090 2 1 4 98 17 27506902 27506923 TCCTCAGGAAACTTTGAATCAG 58 27523799 27523820 GCATAGCTTGTATCTGAGACC 58 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621 1 1 2 86 12 52068970 52068988 AATTCTCCTCCCGCTATGG 59 52068450 52068920 CTGTTCTCCCTACCAGCTG 60 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 1 2 2 80 15 55056798 55056818 TCAAACAAGCAAGTCATCGAG 59 55056860 55058368 CCAGGCAAATACCTCTCCA 59 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 1 1 1 60 X 48196961 48196979 TTGAGCAAATGGATGGGAG 58 48210302 48210320 GGACATCTGGTTCCTTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 1 2 2 80 17 10469489 10469586 GGAGAACTATGAGGCTCTCC 59 10469627 10469647 TCTATGTCTGCTTTGGTGAGG 60 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493 1 1 2 82 3 142781440 142781706 ATCAGTACAGCCCAACACC 60 142781376 142781394 ACTCTGAAGGTAGTGGCAG 59 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493 3 1 2 83 3 142781440 142781706 ATCAGTACAGCCCAACACC 60 142781375 142781394 AACTCTGAAGGTAGTGGCAG 60 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000055238 3 1 2 108 10 88952678 88952696 CAACTTTGGTGGGATCAGG 59 88952766 88959739 AAAGTCAAACTCTTCTGCGTC 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 2 2 4 80 7 116744874 116744980 ACTCTTTCACTGGTACGACTC 60 116745021 116745040 AACAGTACACTGCCCTTCTC 60 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216 3 1 2 100 17 47389994 47390012 ATCATGTGTTATGAGCGGC 58 47299178 47386892 TGATGGACATCTGTGGACC 59 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314 2 1 2 91 5 167173505 167174099 AGAAGAACAAGCCATGTCAC 59 167174151 167174171 ACAGAATACTGTCGTTGACAG 58 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083763 1 1 2 80 14 108467896 108467916 ACCTACAGTGCCTTGATATGG 60 108467953 108473160 CTTCAAGTCCTTTAAGTCATCCAG 60 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000080694 3 2 4 80 19 41247410 41255021 GAAACTGACCATTCGAGGC 59 41247348 41247368 TAGGAAACATTCCCAAAGTGC 59 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 2 2 2 80 10 63657874 63658057 CAACTTTATGGGTGTTCGAC 57 63658100 63658118 ACCTCATGGTAGAACTCCT 57 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000067546 2 1 3 90 2 41442457 41449043 GGGCTACATAAAGTTCAAGAGG 59 41449094 41449112 TATGTACTCCGACACCTGG 58 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000064385 2 1 2 84 11 61253476 61253498 GATTAGCAATTCCTGTTCTCCAC 60 61252350 61253434 CTCAGTCTGCTTTGTTCTTGG 60 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829 1 1 2 85 17 43500370 43500388 AGCTTGAAATCCAAAGGCA 58 43499608 43500321 TCTCCAATCCTCAATGCAC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000037975 3 1 2 62 1 84893850 84893868 ATGTTGGAGACCTACAGCC 59 84893802 84893820 ACACATCACCCATTCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 1 2 2 81 9 67781918 67781936 TGTGCACGACCCTAATAGC 60 67781980 67784178 TGAGGTCATACCTGCAAGTC 60 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353 1 1 3 80 6 8344412 8344431 GTGTCTGCAGAATAAACCCA 58 8336093 8344369 GGCAGAAGATCCTTACGTG 58 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013514 3 1 2 80 4 175851525 175855534 TCCATGCACCTAGACAGTG 59 175855577 175855596 ATTCACAATGAAGCTGAGCC 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000074644 1 1 2 95 2 231873942 231873960 TGGAGACAGAGTCCAAAGC 59 231873199 231873218 TCACTCCAGTCACGAACTG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 3 1 5 81 1 80530862 80530914 GAGATAGAGGGTCAGCAGAG 59 80530800 80530818 TCCCATACGTTGTCCTCTG 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910 1 1 2 80 17 46682518 46682539 CAAGAAATCCAGACTTACACCA 58 46680230 46682479 TACATCAACCTGTCTCCTCTC 59 NA Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 2 2 2 80 8 107910962 107910981 GATTCTGAGACCTCAGAGGA 58 107911024 107913473 CTGTACCAGTGTTGCTGAG 58 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964 2 1 2 80 4 10466140 10466158 AAGACCTTCACCGTAGCTC 59 10460324 10466098 CACAAAGTAGCCAAGGTTGAG 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000081171 3 1 3 82 8 1586749 1586768 GATGAAAGTGGGAGGAAACC 59 1554886 1586709 GGTTTACAGGAGTTCTTAATGAGG 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000091532 3 1 2 81 9 14568127 14568841 CTCCAGCAAGTTACAGTCC 58 14568886 14568904 CTGTCTGAACGATCTGTGC 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 2 1 1 69 14 87701354 87701372 GAGCACTTAACCGAGAGTG 58 87701051 87701070 GTCCTGAAGAGACTGCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 1 1 1 82 2 191294264 191294283 GACAAATTGGATGTCCAGGA 58 191291774 191291793 ATACCACTTGCATTCAATGC 57 NA DesignNoJunction Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000002089 2 1 2 80 11 64828799 64830868 CACTGTCAAATTCCGACGC 60 64828737 64828755 ACAGGCCCTATGTAGAGGT 59 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 2 2 5 261 2 192604979 192604997 TGTCTTACCAACAGCAGCA 60 192616086 192616104 GGAGGAGTTTGGACAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 2 3 4 80 3 111718748 111720134 CTAGGAATGAAGGTGGAAATTCAG 60 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355 1 1 4 80 4 152482009 152482029 CAACCAGCAGTGAGTTTATCG 60 152481256 152481969 GACTCCCTGTGTACTACTCTC 59 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 2 2 2 80 15 103244245 103244263 CGAAATCAGGATGACCGTG 59 103235739 103244204 ATAACCAGCAAAGTTTCCTGTG 60 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 3 2 2 81 4 133318862 133318880 AAATGGTTTGCCTGAGAGC 59 133318924 133319616 TGCTGAAGAATCACTGTGTC 58 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 2 3 4 82 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820457 37820475 ACAGCATTGATGGCTTCCT 60 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000077259 2 1 3 169 15 51798779 51799357 CAGGATTCCATTTAAGATCGGG 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017042 1 1 2 80 10 64751726 64753219 TTCATCAACTTCCAGAACTCCA 60 64753260 64753278 GAACTGGACTGGCTGAGAG 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 3 2 2 80 12 11711189 11711210 CATGAATATGAAACTCGCTCTC 58 11704123 11711150 TTCAGAGGTATCTGTGTTTCC 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 1 1 2 80 4 118217829 118217847 AGAAGCTCTCATCCTCCAG 58 118217891 118220904 TCATTTCCTGCCGTATCCA 59 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 3 2 2 81 1 101843999 101844018 CTCTACCTGGTTACCAACGG 60 101843371 101843956 GCTGATAGAACACCTCACCA 60 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679 2 1 2 80 20 12673833 12673977 GACATTCAGGTAGTTTCTGTGG 59 12674018 12674036 GCAGGAAATGACGTTGAGC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000022281 3 1 2 83 9 89072891 89072969 GAGCATCCCTCATTTGATAAGG 59 89072829 89072847 TGCATTGCTAGAGGGATGG 60 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 1 1 1 143 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565085 105565103 CTTCTGACCTTTAGCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000020003 3 1 2 175 19 37204575 37204594 AACCGAAATATGCACAACCT 58 37206291 37207053 GGTTGTTCTGCATGACCTC 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 3 2 2 80 9 49861920 49864249 CCTCTGCAGTTCAGTTGTG 59 49861858 49861880 CGATGTATTCATACAGGTCTGAG 59 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 1 2 2 95 2 198114370 198114388 CTATCTTGCCCACCCTACC 59 198112898 198114311 GTAGAGGTGGAAGCCACAG 60 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 1 2 8 107 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709851 68709869 CTCCATGAGGGTCACTGTC 60 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000082016 3 1 2 147 7 30315058 30315079 TGTAAATCCTGACATGGTACCT 59 30312455 30314951 AATCATGTTGCTAGCCTGGA 60 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 3 2 2 80 5 169395408 169400256 AACATCCTCACAGGTACCA 58 169400297 169400318 CTTGTCCACATTCTTCAATGAC 58 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 87 1 24190586 24193406 GCTTTCATGAAACAGAGAAGGA 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736 3 2 4 88 1 24190587 24193407 AGCTTTCATGAAACAGAGAAGG 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 3 2 2 89 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940076 112940094 CTTTCTGCCGATCATCGTC 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000039652 3 1 4 83 2 8939052 8991006 TCAATAGTCTGCAGGGACTC 59 8938988 8939007 TATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 3 3 3 84 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752005 50754084 GTCCCATTGATCTTCTCTATGC 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 1 3 3 83 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667 2 1 4 80 15 36845475 36847861 TCAGCAACTCACTCAGTACG 60 36847904 36847922 CGTCACAGATGACCAGGAG 60 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 3 2 7 82 17 57067669 57079367 TGTTGTTCAAGATGAGGAGAC 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000009084 2 1 2 174 7 29556609 29563282 GATCACTGCCAAGTCAGGT 60 29537538 29546218 GGCCGTATTTCTTCCTCCT 59 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 2 2 2 80 1 214180366 214180580 ATCCCACTATAGAGGACTCC 57 214180305 214180324 CTGCTGTGTCTAAGATGTCC 58 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000 3 1 3 80 3 92717920 92721563 AGAAAGCAAGGATACAGACTC 58 92717860 92717878 AAGTCTTCCACCAAATGGG 58 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000090654 3 1 2 97 14 35085618 35087240 ATTTAAAGAGCAAATCCAGCCC 60 35085542 35085563 CAAGAACCATCACAATGATCCC 60 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145 1 1 2 80 15 36934592 36937352 GATCAAGAGGATTCTACTGGG 57 36937393 36937412 GATAAGGAGTCTGAGGAGGT 58 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 2 1 2 80 X 63283487 63284451 AGCTCTTCTATTGATAGCTGGT 59 63283428 63283448 TTCATGATTTCTATGGCAGCC 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000020414 3 1 2 80 9 78341894 78341913 TCTTCTGGTATTCCAGCCAG 59 78332806 78341854 GCAGGCTTCATGCTTTATAGAG 60 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696 3 1 2 81 1 102114895 102114914 CCATCTCCAACTCCCTACAC 60 102114505 102114852 TAGTTGGAGACCATCAAGGC 60 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614 2 1 2 80 5 48561453 48561471 GCTTACAACAAGATCCCGC 59 48561510 48574679 CTTTAGAGGTAAGAATCTTCCTGC 59 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681 3 1 2 80 1 185516524 185518478 TCTTCCAGGAGAAGTCACAG 59 185518519 185518539 TCTCTTTATTCACACTCAGGC 58 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 2 2 2 80 19 33334780 33340696 AGCCAGAGAAGGAAATGAC 57 33334718 33334737 TATTCTCCAGAAGCCAAGTG 57 NA Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 1 2 2 64 1 81376270 81376289 AGATGATGAAGACCTTTCCC 57 81381492 81381510 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 2 2 2 80 4 78451462 78451480 GATTGTTGTGTCTGTGGCT 58 78451044 78451420 TCTTCATCATTCAAGACCTGG 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 1 2 6 85 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527373 CAGAAACATAGATGCCATCCA 58 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000068476 2 1 3 80 1 46920158 46923575 GTACAAAGCTGGCTTAATGGT 59 46923616 46923635 AAGATGGAATATTGCCCGTG 58 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 1 1 2 80 9 78547960 78547980 GGATGAAATTGACTAACGACC 57 78546154 78547919 GATCATACCACACCTTAGCA 57 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109 3 1 2 82 3 112486248 112486266 AGATGGACAACTTGCAGCT 60 112486312 112487625 CAGTTCATGACAGCACTGC 60 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 1 1 2 62 10 43633038 43633059 GATTTAGTCATGAAGTTGCCAC 58 43637231 43637249 CGCCATGTTTATGAAAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000081290 2 1 2 96 17 52364460 52364478 AGATGAAAGCAAGCAGGAG 58 52308168 52364397 ATGATGAACAAGCTGATCCT 57 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 3 1 2 80 3 48469397 48469415 GCACTTTCAGAACTCAGCA 58 48467872 48469353 TGGTCAGAGTACCACATCG 59 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491 1 1 2 100 4 117875121 117875140 ACCTGTAAAGTCCACACCTG 60 117875203 117881973 TCTTGGCATCCTCTGAAGC 60 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115 1 1 2 80 19 28291655 28291690 GCAAGAGACATGGAAGAAGAC 59 28291595 28291614 CTGTTGAGGATTGTGGTCAG 59 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000078754 2 1 2 83 1 214323080 214324996 CTCAGCTATACCTAGGCACAC 60 214325041 214325059 CACTGACTGCTGTGAATGC 60 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000063883 3 1 3 102 11 71035930 71038449 CACAATCAGCACAAAGTATCAC 58 71034122 71034142 CACTATCATCAGTGTGCTGAG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384 3 1 2 199 4 126618810 126619418 GCATATTGAAAGCAATGGTGTG 59 126617815 126617833 ACCTACAGTCACTGCACAC 60 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 3 2 2 90 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529439 18529459 CAAGTTCCTGTAGTTTCTGCC 59 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 1 2 2 64 1 173730181 173730199 TATCACCTTGACTGCTTCG 57 173728570 173728588 AAGAATTTGTCTCCCACGC 59 NA DesignNoJunction Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000077797 1 1 3 81 3 8655424 8655528 AGATGTTAGTGGGTGAGTGTC 60 8655570 8655589 CATGGGACATCAGCATTGAC 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 1 2 2 80 1 48724193 48726150 GACTGCTACGTTAGGAGGA 58 48724131 48724149 GTAGAGCTTGTGTAGCCAG 58 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000013400 3 1 3 81 3 57832707 57832725 CATCCTCCAAGTCGGTGAG 60 57832770 57840099 GGTCCTCGTCTAGATCCCA 60 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441 2 1 2 91 X 112284401 112290823 ACCTCTCAGATCTACTACTCTG 58 112290873 112290893 GCATTACCAGGATTAGTAGCC 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123 3 1 3 122 4 99799984 99800005 GAAATGGTTCCTCAGATTTGGA 59 99798443 99799404 AGCTGAGAGGATCTCTGGT 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880 2 1 2 80 1 212715849 212715867 AGCAATGTGACCTTCTGAC 58 212716231 212721906 AACCTGATATAGCTGTTTCCAC 58 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000082196 3 1 2 98 15 4895578 4895596 CTTCTACCACACGGACTGG 60 4894710 4894731 TAGAGGTGAGACTGTTCAGGA 60 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 1 2 2 80 18 40096771 40100831 AAGAAACAGAGTGCAATGGA 58 40096710 40096731 TGTCTTCCAGGATTTCAAAGAG 58 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000084855 1 1 4 80 4 85601243 85601261 CATGACCCTGAACTTCTGC 59 85601305 85601454 TACAGGGACCTTCACTCTC 58 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455 1 1 2 94 1 78714765 78714784 CAATCTGGTGTCTGCTTCTG 59 78715821 78717460 TCATCTCACAGTGAGGCTG 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 2 2 2 80 1 197913603 197913759 TATCAATGGAGGTCCTTCCC 59 197913542 197913562 TTGTTGGGTGAAGATAAGGTC 58 NA Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 2 2 2 80 11 68150279 68150298 CCCTGATTTAAAGCGTTTCC 58 68148922 68150236 ACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 2 2 2 80 X 65566319 65568352 CTCTGAACAATGACACAGTGG 59 65568390 65568412 AGACAGTCTTCTTGTAAGTACCC 60 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863 2 1 2 80 7 143416229 143416248 GAAGTTCAGAGCCAATACGA 58 143415897 143416187 TTCTTCATACTTGCTGTGGT 57 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000042180 2 1 2 80 7 143416220 143416238 GCCAATACGAGATCATCGC 59 143415890 143416177 CCTGGAGTTCTTCATTTGCC 59 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 3 2 2 81 19 52080993 52081862 GTAGTTATCATTGGCAATGGTC 58 52081904 52081922 CTCCTGGTTTCACATAGGG 57 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 1 2 2 80 10 62694592 62694611 CTGGGTCATATCTTCACCAC 58 62694135 62694549 TTCTTCGAAGTTGTTCGGG 58 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 2 2 2 80 10 62694591 62694610 TGGGTCATATCTTCACCACG 60 62694134 62694549 GTTCTTCGAAGTTGTTCGGG 60 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873 2 1 2 88 16 2890641 2984454 CAGTCTTGACATAAGTGAACCT 58 2984503 2984521 TCTTCACAGGTGGGATGAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 3 2 6 80 5 47907007 47907027 AAGAGCACAAGTTATCCTTCC 58 47907067 47907158 CCTCTTCTAACAACCTCAACC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000090937 1 1 8 80 20 1966123 1966142 AAGATCGGCTACTACGACAG 59 1962819 1966084 GGGAGTTCTGGATATAACAATCC 59 NA InUTR Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000090937 3 1 8 82 20 1966125 1966145 AAGAAGATCGGCTACTACGAC 60 1962820 1966086 GGAGTTCTGGATATAACAATCCAC 59 NA InUTR Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458 1 1 2 87 1 47626235 47629318 TTAAAGACGTGGAGCCAGG 60 47629369 47629387 TCAGCTCTGTAAACAGGGC 60 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255 1 1 5 112 4 140269797 140269815 AGTGGTAAGCACTCTGAGC 59 140269891 140272578 TCAACCAAGCAGGAAGAGG 60 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977 1 1 2 80 14 45856216 45856234 ACACCTGAAACTCTGTGCT 59 45856050 45856174 TCCCAGTAGACCTTATAGCCA 60 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 2 1 4 86 1 262892886 262913312 TATGACCAGCTTACGGACAG 59 262913361 262913379 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 3 1 4 87 1 262892887 262913312 ATGACCAGCTTACGGACAG 60 262913363 262913381 TGTTCCTGGAGTTGTTCCA 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000076892 3 1 3 114 13 76994625 76994646 CTGTGTATGTAATGATGCACTC 57 76994720 77000121 CAAGGCTGTTTCTTTGTCTG 58 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252 1 1 3 100 12 52356873 52358700 TGACAAAGGTTCTGGGAGAG 59 52358763 52358781 AAGACTCAGTGCTGAGCTC 59 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 3 2 2 82 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886900 151886918 GATCCTGAAGCAGGTAAGC 58 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504 3 1 2 124 8 115151733 115152930 TTGATCTGCCAGGTCTTGG 60 115153016 115153036 GATCACAACTAGGGATCCCAG 60 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167 2 1 2 80 1 81339735 81339753 ACTTCACCCAATGCAATGG 59 81341992 81343448 CACAGCTGTAACATTGGCC 60 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 2 2 2 124 17 78493165 78493183 GGTGATGGAGAAGAGGAGG 59 78492251 78493077 CAAGTTCAAGCTGCTCCAG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000086441 1 1 4 80 1 50933160 50933178 CGGTGGCTACTAAAGTTCG 58 50933222 50933511 CCAAATTGACTCGGTCTGC 59 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 1 2 2 126 20 7296594 7298836 AATATCACAGCCGACCCTG 60 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000009400 2 1 2 80 X 115764100 115764121 GAGAAAGCTTTCCTTAGTGCTG 60 115764040 115764061 ATTGTAGTAGATCTCGGCCTG 59 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000013026 2 2 3 80 6 107315170 107315191 TAGAGGTTGATGAGTCAAGAGG 59 107308310 107315132 CTTTGAAGAACTTCCTTTCAGC 58 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175 3 1 2 80 8 114013464 114013483 TGATCCCTGTACTGACATCC 59 114011254 114013420 CATTCTGAAGATCAGCCTGG 59 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 1 1 1 60 7 15483356 15483378 GGTGAAGGTTAAGTTTCCATACC 60 15482951 15482970 CTGCTGTAATTGGTGAATGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190 1 1 2 80 20 13604729 13606544 CCAGCCAGGTATGTTTGGA 60 13604667 13604687 TTTAGCTCTGAATCGAGACCA 59 NA Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 2 2 2 80 3 95313044 95397388 CTACCTGCTGAGGTACTGTG 60 95397431 95397449 TTGCACTGATTGGTCACCA 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083 3 2 4 80 1 189393395 189393416 CAGCTTATCAAAGAGCTACAGG 59 189393456 189394993 TGAAACAAACTCCACCTTCCT 60 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264 2 1 2 90 X 70445761 70446424 GATTCAGGAAAGCCCTGTG 59 70446477 70446496 CCCAGGACTACCTCTTAGAG 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 2 1 3 84 14 85967804 85968311 GTCAAAGGGCATTCAGACC 59 85965410 85967756 CCAAATCTGCAATTGCCAC 58 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624 3 2 3 80 18 60578293 60639869 AACAGATTGACACGAGACG 58 60651432 60651451 CTCCATGGTTGGATCTTCTG 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000016042 2 1 3 80 X 65101933 65101951 TCTTGTTCACAGCCATGTC 58 65101715 65101816 GGAACTCAGATAATGGTAACCC 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000016042 3 1 3 80 X 65099309 65099327 GATTGTTGAACTTCGCCAC 58 65098013 65099265 AGGACAAAGTAGCAACCTC 57 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 2 3 3 93 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558985 254670939 GATCCCAAGGTACCTGTCG 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792 2 1 3 81 6 108511886 108511904 GCTCCTTCAACTGTCTGTG 59 108507370 108511844 TCCTCACACTCATCAATATCCA 59 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721 3 1 2 80 11 65798192 65799293 CAAACTGCTCAGGTACAACC 59 65798131 65798151 TTAGCCCTGATAAGGAGATCC 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 3 2 2 81 15 12876870 12876890 CATAGATGTTGCAGAGAAGGC 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000090240 2 1 4 80 4 15742460 15742480 CTTGGTATTGCCAACCTACAG 59 15740482 15742421 GTTTCTGAATATCTGGCCTGAG 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 3 2 2 80 7 143519387 143519544 GGTACCAGATCAAGGTCCA 58 143519325 143519344 AGATCTCATTCTTGGTGCTC 57 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236 2 1 2 80 17 68488950 68489544 CCGACGTTGGATATAACGG 58 68489588 68489606 TCTTGACATCGTTCTCTGC 58 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000006492 1 1 3 80 6 108838021 108838039 ACCACCTCCAAATGAAGAG 57 108838648 108838830 GGGTCTTCTGACATCTCAC 57 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253 1 1 3 80 2 243736953 243736972 AGTCCTCATCGAGATGACAG 59 243737015 243738140 GACAATGGCTTCATGACCT 58 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 3 1 1 158 10 13541902 13541921 GGCTGACATCAAGAACAACC 60 13537962 13537980 TTCATGATCAGCTCTGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436 3 1 2 124 1 29432190 29432208 CCTTGAATCGCTATCTGCT 57 29436644 29440772 AAATGGAGACTTTGTCTCCTG 58 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000083171 1 1 2 80 3 57021472 57021491 CAGATTGTGAATGCCTTACG 57 57020982 57021432 AAGGATATTTCCTGGCTTAAGG 58 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 2 2 2 80 18 64053894 64057240 ATGTTTAAGATCGCCACGC 59 64053832 64053852 ATGACTTCGCAGATACTTCAC 58 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 2 2 2 87 10 46314836 46327719 CATCAAATGCATGGACAAGGA 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 2 1 1 60 14 86694865 86694883 TACAGTGCTGCAATTCTGG 58 86690124 86690142 AAGCATTACCTGCCAACTC 58 NA DesignNoJunction Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306 2 1 2 80 7 116960403 116960511 TATTGATGAGACCATGATCCAC 58 116960344 116960362 ACGTCAATCATCCTCTTGG 57 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 3 2 2 80 13 107692265 107733311 GAAGGAAGAGGTGGGAGAG 59 107692203 107692223 CTCCTTGTTTCCTTGAACTCG 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000054828 2 1 3 142 1 221893579 221906692 CCTAGTACTGGTCCCACAG 59 221906798 221906816 AGGATAAGGATGCAGAGCG 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000086036 3 1 3 80 10 65587053 65587755 ATGCTTCTGGACAACTGTC 58 65587799 65587817 GCAATATCCGACAACTCCT 57 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 1 3 3 80 10 84630213 84631885 GGAGACCAACTTAACAGTTGC 60 84630153 84630173 CTTCTCTTCACTGAGAGGTGG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000089146 1 1 3 112 10 84637057 84637774 CATCCTCTAAGAGCCAGCC 60 84636030 84636050 GTTCTCCAACATCCTACACCA 60 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000058885 3 1 2 106 11 72181379 72182199 TAGTTACCATGAATATGGCTGC 58 72178988 72179006 ATATGATGACTGGTCGGGT 58 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303 1 1 2 80 2 195677635 195678268 GCTTAAAGAACTCTATTCAGCTGG 60 195677578 195677598 TCTAACTGAACTGGGTCTTGG 60 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000081767 3 1 2 108 1 178157411 178191948 TTTCTAACTGGCACTGCCT 59 178157321 178157343 ACCTTCGTCTATCTCTTGATCTC 59 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 3 3 3 100 12 17743243 17743262 CTTGGAGACAAACCTGAGAG 58 17743324 17745689 TGGCTTCCTCAATACTTCTC 57 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191 1 1 3 80 7 141327240 141327258 GTTCCGCTTTAGCCAAGTC 59 141327299 141327840 ATCTCATACCTGTTGTTGAGCA 60 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000084640 2 1 2 132 5 117590849 117592020 TAAACAAAGTTTCTCCAGAGCC 59 117592112 117592131 GCTTCCGTATAATGATGGCA 58 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 1 1 1 71 1 81594135 81594153 TAACAATGCTGAGAGCACC 58 81593993 81594011 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486 1 1 2 81 5 107727498 107735724 CTTCTTGCCAGCATGTACG 59 107735767 107735787 CGTGAAGTGAATTAAGCTGGA 59 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307 1 1 2 87 15 14622557 14622575 CAGGTGACCTTTGAAGTGC 59 14622353 14622508 AGAATTCTGCTGAGGATGAGG 60 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 2 2 2 80 X 105177413 105178401 CAGTGCTTCTTACAAGAGGGA 60 105178443 105178461 ACAAGAGAAGCCATCCCAG 59 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000046288 1 1 2 83 X 105188514 105188663 GTACAGAAGGCAAAGTCAGAG 59 105188708 105188726 GCAATGAACCAGAGCTGTC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097 3 1 2 81 8 111840531 111840553 GACCACCAGAAATATACAGTGAC 59 111839432 111840491 TCTTTATCCTTCCGGCTCTC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 2 3 3 80 4 155561269 155561287 TTACTGTTGCCACAATCGG 59 155560837 155561228 AGTCCTTAATGATTGTCTCAGG 58 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 3 3 3 81 4 155561270 155561289 TGTTACTGTTGCCACAATCG 59 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000087632 1 1 2 99 7 142146930 142147304 GTACTTTCTTTGTGTACCATGC 58 142146852 142146872 ATCTGCTGAGGAGAAATACTG 57 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 1 2 2 66 2 232129924 232129942 GCCACTGGAAGACTCTCAG 60 232135464 232135483 GTCTCTTCTGTATCAGCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957 2 1 2 93 5 172303392 172303504 CTTAAGTACAGGGTGCTGG 58 172303561 172303579 GATTCATAGGGTGCATGGG 58 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000013366 2 1 2 80 15 103885126 103927530 CTTGTTCTTCTGGTACTGGGA 60 103885066 103885085 ACGATTGCCTTCGTTAAGGA 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000091310 1 1 3 100 3 146396287 146407087 GAGGGCAGTTCCTTTAGTG 58 146396205 146396223 GACTCCAACAGCATCATGG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 1 2 2 80 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615633 141641691 GGATGTAGTGCACCTTATCCA 60 NA Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 3 2 2 80 1 191917418 191917436 CCAAATTCACCAATGGCCT 59 191911843 191917376 TGAAGTGAGACACATACTTGG 58 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 1 2 2 80 3 60721405 60726731 AAGTCTGGCTATCATACTGCT 59 60721345 60721363 GATCGCTTCTGTATGTGGG 58 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 1 1 1 60 1 228145648 228145666 CCACTGACTTCACAGAAGG 58 228146791 228146810 CAGTGAAGATAACCACCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 1 2 2 80 10 43751524 43751542 GATCTTTCCGCACTAGCAG 58 43751585 43751713 CACATATCTCACACTGCAGG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000078701 2 1 6 108 19 33932882 33932900 AAGTGTATGAGGAACGGCC 60 33932969 33979338 CACTGCTCTGTACCTTAAACAC 59 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56395290 56395308 TCATGAGTCATCTCGGACC 59 56395350 56396614 TGATAATGTAGATGGGCCCTC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 2 3 4 80 8 70175529 70175969 TATGTGAACGTGTTAGACTCC 58 70176008 70176029 AAGTTCAATGTAGAAGTCCTCG 58 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000010367 1 1 2 80 X 127804023 127804044 ATGAAAGTTGGTGGAAATCTGG 59 127804083 127819761 GTTTACAGGCGTTCTTAATGC 58 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000016341 1 1 2 80 3 11321262 11325955 CAGTCAGCAGAGAATGTGC 59 11325997 11326017 GACACCAAGAAACATAGTGGC 60 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171 1 1 2 80 3 11322331 11325955 CATTAGACAAGAGGAAGGTGC 59 11325995 11326015 CACCAAGAAACATAGTGGCAG 60 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 3 2 2 81 10 85944823 85945566 GAATGCTGAGTTTGTCATCCT 59 85944762 85944782 GATCTTATACAGCTCCTCCCG 60 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 2 2 2 80 1 154152106 154165295 CAGGTCTTAAATCTGGAGAAGGA 60 154152048 154152066 CAATCTGGGCAACAGATGG 59 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 3 2 2 80 19 44974642 44974660 GTTTCTGCGCTTCATTCCT 59 44974703 44988570 TATAGGCAACCTCCGAACAC 60 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057 2 1 2 98 19 45073440 45074098 AATAGAATTACGCTCACCCAC 58 45074158 45074176 TTGTCATTGAAGTGGGTGG 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 3 2 4 104 5 152685882 152685900 TGGCAGAGGAGAAACTGAC 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 1 2 2 80 13 99234195 99234214 ATCTACCTCTTCCTCACCGT 60 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025700 3 1 4 107 17 70703391 70703409 ACACAGTCCTGAAACTGAC 57 70703584 70711169 TCCTCATGTTCTCTGACCT 57 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000051067 2 2 4 83 17 70704240 70704258 TTGCCAGTGTAGTCAGACC 59 70704305 70705176 GTCCCTTCTTTGCATCCTG 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342 2 1 2 80 4 22619751 22619772 CTTTGGATATGTCAACCTGGAG 59 22576782 22619713 AACATATCCCTGTAAACAACCC 59 NA Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 1 1 1 69 15 19196481 19196499 CTTCACCATGTGTTCCCTG 59 19197914 19197932 ATTCTCACTGAAGCAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000088558 3 1 2 80 1 7371252 7371271 GCGGTTTAATGAGTATGTGG 57 7367975 7371209 GAAACTAATCTGGCCCAGG 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239 3 1 2 111 18 54108793 54118140 CCTTGTCTACTCACAGGGAG 59 54118212 54118232 CATCACTGAAGACATGGATGC 60 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 2 1 2 80 10 10844878 10844896 GAGCTCTGTCTCCCATCTC 59 10841864 10844837 GGACACTGTCAGAATTAGAGTG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000092086 2 1 4 80 1 154447406 154447426 GCCAACCTTAATATACAGCCA 58 154447466 154447618 AGTACTTGTATCTGTGCTCCT 58 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 1 2 3 80 2 196637082 196637100 ATGATGATCCAGAGGCTGG 59 196637141 196638309 AGTTAGGAGAACTGGTTACCTG 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893 1 1 2 80 1 5248343 5250563 AGCACTCCTGCTGATAACTC 60 5250602 5250624 CGGATTATAGTAGAGGTTCAAGC 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026394 3 1 2 81 18 55811283 55811803 CTATTCATGTAGTGGACAAGTACAG 59 55811841 55811860 CCGGCAAGTGTACTAATGGA 60 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 1 2 4 80 2 182030319 182030337 AGACGGAATACTGCCACAC 60 182029746 182030280 GAATGATCTCTTCACACTCTTTCC 60 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 2 2 4 80 2 182030322 182030340 CTCAGACGGAATACTGCCA 59 182029749 182030281 TGATCTCTTCACACTCTTTCCC 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 3 2 2 80 3 3838275 3838293 CAACCTCCTACCACCACAG 60 3838337 3838479 TTTCTCGAACCTGTCGAGG 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 1 2 2 80 1 84123004 84123022 CAGTCATTGTGTCCTCACG 59 84122127 84122961 TTGGCATTCATCCACATCTC 58 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 2 3 4 80 X 70459696 70460243 CTTCATCTCCAAGGTGATTCC 59 70459636 70459656 TCATTCACAGCTAGAACTTGG 58 NA InUTR Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 3 3 10 89 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248510 117248529 ATACCATCAGCCTTGTCCAG 60 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000068594 3 1 2 123 19 42785530 42800102 AAAGACCAGGAAGTCGGTG 60 42781453 42781471 TTGGCCTCTTCGATGAGAG 59 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 1 2 3 232 20 3439933 3439951 ATCTCCACACCATGACTGG 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 2 2 2 80 6 111077267 111077703 CACAATGACAGCCTAACCTC 59 111077745 111077764 TTCTGCCTCCAAGTAAACCT 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 3 2 2 80 1 188088378 188090103 GGAGAATCTCCAGTCTGGA 58 188088316 188088334 CACTGAGAACACCGAACTC 58 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 1 2 2 80 4 78514251 78514269 TTCTATGGCTGAGCAGGTG 60 78514311 78514633 GTTACAGCCAAAGGATACCTG 59 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 3 2 2 81 4 78514247 78514265 TCCATTCTATGGCTGAGCA 59 78514310 78514630 ACAGCCAAAGGATACCTGG 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 1 2 3 80 19 53638875 53639690 GAAGAACGCAAACAAAGAGTG 59 53639732 53639750 TGCTGTAGAACCTACTGGG 58 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 3 2 2 80 1 102864264 102867294 ATTAGACGAGGGCTATGGC 59 102867335 102867356 ATGGCAGCATTACTATTCTCCT 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000080567 1 1 2 89 12 12649924 12649942 CAGACACATCGAACCTGAG 58 12652549 12652798 TGAGGTAAACTTCCGTAGTG 57 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323 1 1 3 86 12 11605150 11605255 TAAAGCTCCTGGTGCTCAG 59 11605082 11605100 ATGGCGTACTTCACAAGCT 60 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 2 2 2 80 2 197981407 197981425 CTGAAGTTCATTGCCAGGA 58 197975042 197981363 GGTGAGGATTCTGTTCAGG 58 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 2 2 2 80 20 13113953 13114979 GAAGATGATTGTCGAGGTCAG 59 13115021 13115039 GCTTCTTTGGACTTGAGCA 58 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644 3 1 2 102 X 72687426 72687444 CTCAGCACTTCCACCTCTC 60 72687504 72688393 GATCATATTTGAGTATGGGTTGGAC 60 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 3 2 2 80 1 214247655 214247675 AACAACTCAGAAGAAAGGACG 59 214247715 214247965 GTGCAGCTTCTTCATGTACTC 59 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 2 2 2 82 14 21490739 21552671 TATAGCATGCTTCCAGTCAG 57 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 3 2 2 183 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885041 171885059 TCAAAGCTGAAATGCCGAG 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000079732 2 1 2 100 5 145146372 145148308 CAGCATAAAGGAATATGGACCTC 59 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000079732 3 1 2 117 5 145146277 145146295 CTACATCCCAAGTCCGACC 60 145146372 145148308 GAGGTCCATATTCCTTTATGCTG 59 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 2 3 7 80 9 43625918 43625936 GAGCCAATGGTTGTGAGAG 59 43625977 43632707 GTAAATGGCTTCAATGGTTTCG 59 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000082332 1 1 2 96 10 8347997 8354320 TTGCTACAGGGTGGTTACG 60 8331934 8331952 TTGCAACGAAGACGAACTG 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799 1 1 2 80 X 71448769 71448787 AAACAAGCTCTCAGCTGTC 58 71448830 71449631 ATGCGTACATAACCAGTAGC 58 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 1 2 2 80 X 110683627 110692686 GAGCCATATCAGACCTATTTGG 59 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 1 3 3 91 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085530 83085548 ATTGCCACTCTCGATCCAG 60 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 2 2 3 92 13 83085514 83085533 TTACTTCGAGTCAGTGCTGG 60 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000035722 3 1 4 80 4 85694886 85701103 CAGCATCTACTTCAGCTGC 59 85701145 85701165 AGTTCTGACATCTTGCAAGAG 58 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 1 5 6 80 20 3305442 3306023 CGATGATGGAAGACAAATCTGAC 60 3306059 3306081 CACAATGGTCTTCATATCGACAG 60 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 2 1 1 75 3 61591088 61591106 GTATTGTGCCAAGGACCAG 59 61591978 61591997 CTGGTTTAAAGCCACATCCC 59 NA DesignNoJunction Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000077784 1 1 7 80 5 165981712 165981731 CATTGCACTGATTGGACTGG 60 165980839 165981669 AAAGCACAGACCACAAACC 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 3 2 3 148 9 12477292 12581721 ACAGTTCCTACCGCATCAG 60 12581833 12581851 ACAGAACCTCTTTGCCTCC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554 1 1 2 80 17 77605086 77605221 GTGGCTACAAGCCTATAAGTG 59 77607641 77607662 TTGATGACGTTAGTGGTTTCTG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 1 3 4 80 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230014 124230032 TTAGGGTGACACCATCAGC 59 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 2 2 2 60 10 47340650 47340668 GAGGATGAGGTGGCTACAG 59 47340692 47340710 TGTCAAAGTCATGCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 1 2 4 119 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738394 79738414 ATCTGCAGGCTTTATTGTCTC 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 2 2 2 81 1 15731791 15736439 ATTCACGGGATATCGAGCT 58 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899 1 1 2 81 5 160402308 160404845 GACATACACATAGCAGCCTC 58 160402246 160402264 CATCCTCTCCTCCTACCAC 58 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 1 1 2 96 1 151730178 151782375 GAAACCCTAAGCTCCAACG 59 151782435 151782453 TGATGTGGACAGACAGTCG 60 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 2 1 2 98 1 151730178 151782375 GAAACCCTAAGCTCCAACG 59 151782436 151782455 GTTGATGTGGACAGACAGTC 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000018556 2 1 2 91 1 16109258 16109278 GAGAATCCTGAGCAGAATGTC 59 15974755 16100587 AGTCGTACATCTCCTTGGC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000050222,ENSRNOT00000078583,ENSRNOT00000091677 1 3 8 80 6 64838574 64838592 CAAACATCAGTGGGATCGG 59 64838633 64839959 AAGAATACCAGCCTTCTTACCT 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 2 2 2 80 3 60086736 60088295 GCCTGGTCTCCTTGATCTG 60 60086674 60086692 TAGCTGTGAGCATGTGAGG 60 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 3 2 2 86 12 22113071 22116200 GCAGAATGGTTCTTCCTTTGG 60 22116248 22116266 GGATTGGTGGAGATCCCAG 60 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 2 3 4 82 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000043199 2 1 2 80 4 99769248 99769269 ATGAGGACACTATAAACACCGA 59 99769310 99773153 AACTCTTGGCTAGAGCTGC 60 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889 2 1 2 80 3 113126804 113126827 ATGGTTTCCTCGTTTCCCT 59 113126742 113126760 GACCACTCTTGACCTTCCT 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000056483 1 1 3 90 8 111749370 111752916 GCAAATTTGGAAGAACTGACTC 59 111749301 111749319 CGAGAGTCAGGATTAGCCC 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 1 2 2 80 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409727 78409745 CATCCTCTTCCTCCACTCC 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 3 2 2 81 3 113936773 113936793 AATAGGAAACCTGCTCTTCCT 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923 2 1 2 80 7 142645204 142650187 AACACGCTAGTGAAGAGCT 59 142650230 142650249 AGATGAGGAAAGTGTTGGCA 60 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 3 2 2 80 12 47957901 47958009 CCTGTTCAAGACAACCAGTG 59 47957840 47957859 AAGAGCTGCAGGTAGTTCTC 60 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754 3 1 2 80 3 5472290 5472309 CTATCACATGGAGAAGCAGG 58 5470391 5472248 AAGACATTCAGACTACCGTC 57 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060254 2 1 10 80 15 32425454 32425474 TCCTTCAACCTGAAGAAATCG 58 32614127 32806043 GGCATTGTTGTTATTGCCC 58 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 2 2 2 80 1 79953615 79953997 GCTTGGAGAAGAAAGAGGT 57 79954041 79954059 GGTTGAAGACCTCCTTCAC 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000012129 3 1 5 114 3 2264962 2264980 ACCCTTTCAGCTTCCAGAC 60 2266826 2267931 CTCTGTAGGTCACTGCTCTG 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 2 3 3 80 18 65388812 65388833 TCCCAGTACTACCCATATTCCA 60 65388873 65389351 TTTCTTTGTCTGCACCTCCA 60 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 2 2 2 80 15 2639717 2639735 ACATCAGGTACCAACTGCA 59 2636609 2639676 GACCTTTGCAGAAATAGAAGCA 59 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 3 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152497 104154706 GTTCTTCTGATCATAAGCCGA 58 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 2 2 2 80 10 61707923 61707941 AGGATGAGCCAGAACTTCC 59 61706684 61707880 GTCCAAGATCTGGATGAGGG 60 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 3 2 2 80 5 21291773 21293010 TATTACCAGACCCTCTTCTGC 59 21291713 21291731 AGGTAACTCCTTCACTGCA 58 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802 1 1 2 81 5 21291725 21291743 ACTATTCCACCTTGCAGTG 58 21277900 21291681 ATTCTTCTATCTGCAGCTGG 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 1 2 2 240 X 111122743 111122761 TTCGAGAAAGAACAGCTCC 58 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000037115 3 1 3 80 2 174347617 174347639 GAGAGGAGAATAGACAACTACGA 59 174342074 174347580 ATTCTGCAACTTGAGTCTTGAC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 2 2 3 80 7 28741998 28742017 TTTGCAACCACTGGATATCC 58 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 1 2 2 80 3 3845414 3845434 ACAAGTTTGACATTGGGAAGG 59 3844833 3845373 TGTATAGGACTCGGTCTGTG 58 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000082712 3 1 2 80 16 32371756 32371775 GGCATCTCTATATGGAGGCA 59 32371272 32371715 CTTGCCAGATAAACCTCTTCC 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 2 3 3 85 X 77119976 77119998 GGGAATGACATGTATTTCCTGTG 60 77120037 77135888 CTAGGGAAACTTTAATGTGATGGAC 60 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 2 2 3 80 X 77137647 77137665 ACTAACCTCTCCAGAACCC 58 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 3 2 2 90 6 125656209 125656227 TTGCTACAATCTGCAAGGG 58 125652926 125656155 GCACATACAGCGGTTATCC 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 2 2 3 84 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179840 143179858 GGTCATGAGAACAAGCCTG 59 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734 1 1 2 81 4 123489643 123502737 CAACTATTTCCAGCACTGGC 60 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000082974 2 1 2 80 10 85964774 85964792 GACAACTCCAGTTCCAGTC 58 85964346 85964731 AGTCATTTCGTTACCACTGG 58 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 3 2 2 80 2 195668729 195670514 GACGTCTATGTTTGAAATTCCC 58 195670554 195670573 TCAGAAGCAGAAACGTAGAC 58 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000044591 2 1 3 80 11 80933954 80934585 TCCTGGGCAAGTTAGTCAC 59 80933892 80933914 GGTCCCATACAATTAGGATTCCT 60 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 3 1 1 100 7 74327028 74327047 AGAAACCCAAACCTGTAGGA 59 74326944 74326962 CATATGACGAATGGACGCC 59 NA DesignNoJunction Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000005687 3 1 2 82 10 109179989 109180007 CTACAGTGTGGCAGTTCCT 59 109181270 109187065 CATTGGCAAAGGGATTCCTG 60 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950 1 1 2 84 18 71221185 71251381 CAGATTATGCCCAGGACCT 59 71251428 71251447 AGAGAATTAGTCAGGCAGGA 58 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178 2 1 2 151 3 11831664 11831682 TTGGCACAAGAATAAGGCC 58 11825464 11831549 TGTGCGTGGATCCTATGAG 59 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000088121 1 1 2 96 1 190229542 190229914 ATGTCCTACTCGTTTGGCT 59 190229968 190229992 GTCCAACATTCCATAGTATTCAGAG 60 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933 3 1 2 80 1 190223398 190224330 TACTCTTTATCGTGGAGGAGC 59 190224370 190224390 CAATGGCATAGCATGTAAGGA 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 1 2 2 84 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723699 TGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 3 2 2 86 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723681 94723701 CTTGTCATACAAGGGACATGG 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 3 2 2 80 3 114370520 114370539 GGCCTTCATCAATTCTACCC 58 114370582 114370766 TAGGAGCAGATGACCTGGA 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 2 2 2 147 10 37039447 37039557 AATCTGGATGGCCAGAAGG 60 37039668 37041546 AGAAGGCTGCAATCTTCCT 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107 2 1 2 80 8 53417695 53417713 GTGGCTGTGTAATACTGGG 58 53417754 53418396 GCCAGAGATACAACACTAAGAG 58 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 2 2 2 81 7 124001705 124001723 ATGACATTGTAGCACCCGT 59 124000080 124001660 CTCATTCCAGTCGTGTGGT 60 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709 3 1 2 95 13 113710385 113711082 AGAAAGGCTGGGTGAAGAC 60 113711141 113711159 GCCTTTCCCTGAGTCTCAG 60 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 3 2 2 80 3 148169774 148169794 GAGTTTGACACTAAGGACCTG 58 148169833 148169945 AATCCAATGCTTCCTTAGAAGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000078744 1 1 3 103 10 86383148 86383475 AAGAGGATTGTGCTGTGTC 58 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 3 2 2 121 7 11436251 11436271 ATTTGCGAGAAGGTGATTCAG 59 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000079539 3 1 2 81 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838823 43839358 GGAATAGGCCTTACTTCCTG 58 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 2 2 2 80 1 191618308 191620047 GGAGTGAAGACGATGGAGG 60 191618246 191618266 CAGAAGATCTGGATGACAAGC 59 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811 1 1 2 81 6 33215883 33223885 CACAGCCAATAATGGGCTG 59 33223930 33223948 GCCTTCATTGTAGAGGCAG 58 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811 2 1 2 82 6 33215883 33223885 CACAGCCAATAATGGGCTG 59 33223931 33223949 AGCCTTCATTGTAGAGGCA 59 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 1 2 2 80 13 103199627 103199645 CTTGTTGACCCTGTGTCTG 58 103199686 103199940 TCTTTCACTCTTCTTGTCACTC 58 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 3 2 2 80 13 103185837 103185930 AGTCAGAAGAGGAGTTCCA 57 103185974 103185992 GTAGAACCGCACATAACCA 58 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155 1 1 2 81 2 208633771 208633792 AGACCAAAGAGAATGAATCCCT 59 208623044 208633735 GAGTATTTATTCACCTTCCCATGAG 60 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 2 2 2 80 8 55045945 55045967 GAGAACTAGAGAAGCAAATGGAG 59 55044509 55045906 TTCTCATCCGACTTGAGCTG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627 2 1 3 80 9 73418546 73418566 AGAAACAGTTAATCTGCCACC 59 73418607 73429566 ATCTTCGAGGCTTCTTCCAG 60 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 2 2 2 103 7 125265537 125265555 GGACAAGCTCAACCTTGTG 59 125266017 125271098 CATCTGCAAACTGGGTCTC 59 NA Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 3 2 2 80 10 37158260 37163054 CGAGTAAAGGTGAAAGAAGAATCC 60 37158203 37158225 CTCCAAGAAAGACTTCATTCAGG 60 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 2 2 2 84 4 162185000 162189811 ATTCCTCACAGTAAAGTGCG 58 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000020886 1 1 2 80 1 218704417 218704435 GAAACACTCAGCCTCACTG 59 218700125 218700413 TTCTTCCTCACGGTAGGAC 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645 2 1 2 87 1 267437790 267438617 TCAAGGACCTAAAGACCGTG 60 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000065743 1 1 2 86 9 94316803 94323053 ATAAGAGCCAGAGTGGTGG 59 94323103 94323121 ATGAAAGTCACTGTGGCCT 59 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 2 2 2 101 4 162393021 162397228 AATTCCTCACAGTGAAATGCTC 59 162397290 162397308 CTGAGGACCACGATCACTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 1 2 3 88 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 1 5 5 95 10 70167492 70167510 TACCTCCTACCTCACCTGG 59 70163985 70167433 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 2 5 5 97 10 70167493 70167512 AGTACCTCCTACCTCACCTG 60 70163985 70167433 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421 3 1 2 80 6 23274249 23274270 GCTCAACTTATAGACCTGGGA 59 23274189 23274209 GTATGAAGCATAATGCAAGGC 58 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 2 2 2 80 3 45117461 45117480 AGATGCTGATCAAGCAACAC 59 45112905 45117423 CAGACTCCAATTTACATCTGATCC 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 3 2 2 80 3 45111153 45111171 AAGGCTGCCTTTGAAAGAC 59 45111014 45111110 ACCTAGTAACTCCACACTCC 58 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000046049 3 1 2 88 1 63568701 63568720 CATTTCTGCTTACAGGACCG 59 63559622 63568650 AAGCTGAAGGAAACGTGGA 60 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000086061 3 1 2 110 7 12274813 12275364 GATGATTGTGGCACTGCAG 60 12274721 12274743 TCCTGTCTTAAGTGAGTGTTCTC 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 1 2 2 156 9 15114100 15114787 GGCCAGTTTATCAAACACCTC 60 15116163 15116181 GTCGCATATGCAGATGTGC 60 NA InUTR Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669 1 1 2 80 17 90717306 90717874 AGTCATTAAAGGAGGAATTCCG 58 90717247 90717265 ATCTGCATTTATCGCACCC 58 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 2 2 2 182 3 120076233 120076777 GGAAGCAATGAAGGCATCG 60 120032292 120076087 TCACTGTCACTGCTGTCTG 60 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 3 2 2 80 1 64054623 64054644 CAAACTTGTGCTCTTTGATCTG 59 64054685 64124661 AGGCCACAGAGTATCTTCC 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412 1 1 2 90 7 34649185 34649203 ATGAGGACGTGAGAACAGG 59 34649258 34649278 AAGATGTGCAATGCTCTCC 58 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 1 2 2 80 19 43936509 43937510 ATCATTCGGTGTATGATGTTCC 59 43936450 43936470 CATCATATGTTTCCTCACGCA 59 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 3 2 2 81 6 135282102 135283469 CCTTCTGGTGAAGGTTGAG 58 135283512 135283532 GTCATACAGCTGTTCAAACTC 57 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685 1 1 2 81 6 135274884 135278853 CCCTACAGAATGGTGAGCC 60 135278898 135278916 CTCAGAAGAGCTGAGGGAC 59 NA Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 2 1 1 61 17 78739912 78739930 GTGACATTGAGGACTCCTG 58 78740513 78740531 GTTGAGGGTCCCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000064249 3 1 2 80 2 260527626 260527645 TTAGTGATTGGGTGATTGGC 58 260527687 260531760 CTCTCCAGATCTTCACCTCC 59 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 2 3 3 80 10 88410810 88413058 ATGAACTATGCACAGATCCG 58 88410749 88410767 CTTCTTGATGAGCTTCCGT 58 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 1 2 2 82 9 100286317 100287254 ACAAGGCCAAATCCAAAGTC 59 100287296 100287317 CCACAACTTGGACAAATAAGTG 58 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 3 2 2 80 10 70153524 70154104 CAGTAGCAGAGGTGGAGAG 59 70154148 70154166 GTCTCATCAGCAGCTTTCC 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 3 2 2 80 1 84157408 84157426 CATCCTTCAAGATCCTGGC 58 84156918 84157364 CACCATAGGGACCAATGTC 58 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 3 1 2 80 5 59064458 59066438 CTTCCTCTCACTAAGGTGGAG 59 59066480 59066498 GCTTTCTTGAGCTGCTCTC 59 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 3 3 4 85 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563095 115563113 GTACTGAATGGCTCAGGCA 60 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000085465 3 1 3 82 20 35260893 35263458 ATGAATCAGGACAAGGCCC 60 35260829 35260849 TCATGGGCAATGTAAACATCC 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 3 2 2 80 17 81222924 81222943 TGAATACTGCTGAGGACTGG 59 81222985 81233697 GACAATCTTTAGGCCCTGTG 59 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000078372 2 1 3 81 8 13875649 13875670 AACCACATCTAGATCTTGACCT 59 13875192 13875610 GATGAAGATTCTGAGTTCTGGT 58 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000029634 2 2 3 80 8 13875649 13875670 AACCACATCTAGATCTTGACCT 59 13875196 13875610 AAGATTCTGAGTTCTGCTGGT 60 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 1 1 2 80 2 86470236 86470256 GCGAGAAGCCTTATAAATGTG 58 86470172 86470196 CTAGCATGAAGTAGTGTCGAG 58 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002981 1 1 3 84 14 34480765 34484605 AGTAGTCAGTTTCAGCTTTCAG 59 34484650 34484668 CTTCTATCATGCGTGTCCG 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 2 1 2 88 7 130171092 130176454 GCGCTAGAGCTAGTCTATCC 59 130170945 130170963 GAGTGGGAGTCTGGAAAGG 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 3 1 2 112 7 130171091 130176453 CGCTAGAGCTAGTCTATCCG 59 130170422 130170440 GAACTGAGTGTCTCCCAGG 59 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 2 2 2 80 19 1040079 1051241 CACTATGTGGGAAAGATCAAGTC 59 1040021 1040040 GATCTTGCCAGCTTGTTCTC 59 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 3 1 1 70 X 70428341 70428360 TCTGTCTGATGCCATCAGTC 60 70428053 70428071 CAAGGATTCTGCACTGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107 3 1 2 85 2 198997299 198997319 GCTGATTAAAGAGGACGACAG 59 198997366 198997755 CCTGCTGTACCTCCTTGAC 60 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660 3 1 2 81 3 122006607 122006629 TACTACACTGTGGAAGATTCTGG 60 122001148 122006567 GATGAAAGGCTTCCCAACTG 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000038748 1 1 2 86 3 122001154 122057407 GTTACCTGTTGGGAAGCCT 60 122001086 122001105 GCAGTACAGAGAAACTGCAC 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000090817 1 1 4 82 5 127613624 127613642 ATGGTCATTGTGCTCACCT 59 127613687 127614962 CAGCAATTTAGTGCCCAGTC 60 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452 3 1 2 82 8 117066574 117066595 GCTAATCATACTTCCACAAGGA 58 117066711 117067564 CAGAAGCAAGTGTAGGAGAG 58 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000055285 1 1 2 99 7 144867695 144868594 TTTGGCAATGATGGAAGCA 58 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 1 2 2 80 11 84045613 84045632 TACTTTGGCAAGATCAGCGA 60 84044727 84045572 AAAGTCCAGAATCTCGTCCAG 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165 1 1 2 85 5 126657843 126657861 GACAGACTCAGACCAGCTC 60 126650714 126657794 AACTGTAGAGGGCGTTCAC 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165 2 1 2 90 5 126657846 126657866 GTATGGACAGACTCAGACCAG 60 126650714 126657794 AACTGTAGAGGGCGTTCAC 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 2 1 1 60 1 88621385 88621404 TGTACAGACTGACCATGACG 60 88621819 88621840 CCCAAGCAGTATAAACAGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 2 3 3 80 12 30069029 30069048 TATGATCCATACGCCAATCC 57 30051547 30068986 TCCTTTATGGACCCTCCTG 58 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582 3 1 2 80 3 104168274 104176575 AAGCCATGCAAGTAAAGTCTG 59 104168214 104168235 TCTGGATGGAATACAAGTCTCC 59 NA Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 1 1 1 60 1 274650330 274650348 TCGATGTTCCGAGAAGTCC 59 274649615 274649635 TTGTGGTTACATCTTCCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109 2 1 2 80 2 198936175 198936193 CTCTCAGTTCAGGCTTCCT 59 198935135 198936133 GTTTGTACTGTGCTTGAAAGG 58 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 2 1 1 62 18 75203861 75203879 GAGTCCTCGATGACTCCAG 59 75127335 75127353 GTGTACTGTCGTCTGGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000091448 1 1 2 80 X 10405858 10405877 CTTGTTAGTAGCCACTCCAG 58 10405382 10405816 ACCAGGTATTTGCAGAAGTC 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 127 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800563 53801357 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 1 2 2 129 9 92511320 92511338 TATTTCTCCCTCATGCCCG 59 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 3 2 2 137 9 92511327 92511346 CTAGCGGGTATTTCTCCCTC 60 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 2 1 2 81 4 123519070 123519479 CACATCTGTTTCTGCTGGG 59 123518675 123518693 GTGGTCCTCTACGTCTGTG 60 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 1 2 2 109 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044071 51044089 TTGTTCCAGCCAAACATGG 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 1 2 2 80 5 126671251 126671269 CGGTTTACACTACCTGGGA 59 126671310 126674108 TAAGTCATCTACTACACCTCGT 58 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255 3 1 2 90 10 35712039 35712057 CTGCTCCATCAGAGGATCC 59 35707559 35711985 TCAACCTCGATGCCTAGAG 59 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000074573 1 1 2 80 7 107008870 107008890 CCAAACTTTGATCTATGACGC 58 106981199 107008830 AACCAGTAGTAAGTGACAAGC 58 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000007887 3 1 2 86 6 72489146 72496357 GAATACTTCAGCAGAGTGAGTG 59 72502370 72502391 GCCATTTAACACCATCTCATCC 60 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000082183 2 1 2 147 14 36071656 36118608 TACTCGGAACTCTGCAAAGG 60 36118717 36118736 TTAAAGAGATGGTGGCAGCA 60 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000082183 3 1 2 149 14 36071656 36118608 TACTCGGAACTCTGCAAAGG 60 36118718 36118738 CATTAAAGAGATGGTGGCAGC 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104698718 104700324 TCGGTCTTAATTCATGGTGC 58 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218 3 1 2 112 8 116273538 116273557 GGTGCCTATAAGGAGTACCA 58 116274206 116275428 TGATTGGCAACTTGACCTG 58 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 3 1 1 60 1 13171421 13171441 GTGGAGGAAATTCATCGTCTG 59 13166110 13166130 CAAACTTCACACTCAGTTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458 1 1 2 80 14 37262076 37284501 TGCAGCTGTCAACTTTCAG 59 37262014 37262032 AGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 3 1 2 84 3 114921002 114921022 GATTCAAGATAGAGTGGCGGA 60 114921066 114921622 TATTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 1 2 2 80 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859816 112863266 ATTGTATATTCACCTGTGCTGG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000041577 2 1 2 80 8 22620634 22621128 ACCTGATTCCCTTAGGCTC 59 22621172 22621190 TGAACTGGTTGTTGACTGC 59 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 3 1 1 62 10 74386488 74386509 CTGTGTACACAAATTTCACTCC 58 74384385 74384403 GGGTTCCTATCTGCCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 3 3 3 143 12 25363366 25366492 CAATGAGAAATACGGTGAGGC 60 25366597 25366615 TGGATGTCGTAGGTGTTGG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 3 2 2 80 16 8318690 8318709 CTCCATACGTACCCAGTACC 59 8318751 8320048 TTCTGGCAGAAGTCTGACTG 60 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846 1 1 2 80 13 53304200 53304219 ATGAAGACAGTGCTTCTCGT 60 53304260 53309105 TATGACAACCTTCACATGCTG 59 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228 2 1 2 85 8 117812407 117827472 AGTTTCAACTCTTGCGATGAC 59 117827517 117827537 TTCTCCATACCAGTCTATGGG 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 2 3 5 81 9 97989254 97989273 CTAGTGGCTGTCTTTAGCCT 59 97975848 97989212 TCTTGTTGACTTCCATGACTG 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 3 2 3 80 18 12032959 12032978 TCCAGAATGTTCTGATGGAG 57 12033019 12033405 ATGGTGGTTATACCATCATGG 58 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 2 1 1 60 10 14628981 14629001 AAGATGACTATCCGTCCTCAC 59 14625078 14625097 TTTGGATGAAACAGTGGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 2 2 2 80 1 209792224 209792439 GAGGACTTGACATAATTAAGGAGC 59 209792477 209792496 TTTCCTCTAACTTGGGTGCT 59 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 3 2 2 80 1 209778482 209785728 TTCATTTGTGAAGCTGGAAGC 60 209785770 209785788 AACAGGAAGGTGGGAACAG 60 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 1 3 3 80 7 40306427 40308078 GACGGCTGTTTAATTAAGGTCC 60 40306368 40306388 TGGTTTGGAGTTCATGTAGGT 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 3 2 3 86 6 135025758 135026358 GCCTTCAGATCAACTCCAG 58 135024799 135024819 CTGAGTCTCCATCATAAGGGT 59 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 3 1 1 60 4 163112351 163112371 GAAAGAAGAAAGCCAGAAGTC 57 163120401 163120419 ATAGGAACCAGCAGAAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000081373 1 1 2 80 15 39658029 39658047 ATCAAGCGAGGAATCACTG 58 39658089 39669074 AGTACTGTAATTCTCTGCGTC 58 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 1 3 3 80 1 275866775 275866795 CTCTTCAACAGCTTCTTCTGG 59 275866166 275866734 CAGATTCGTCTCAGTTGCAG 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000091789 2 1 3 80 8 82124454 82124475 GGAATTATATGCAGATGACCCT 58 82124513 82125911 TGTTCCATCAGATCAATCATCC 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288 1 1 3 80 8 82037991 82038979 ACTAGAAAGCAAATTTGCCC 57 82039019 82039040 TTATAGTCCTTGAGCAACTCAG 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288 3 1 3 80 8 82037979 82038430 TAGTTCCAGAGAACTAGAAAGC 57 82039010 82039028 AGCAACTCAGCTGATTTCC 58 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000064207 2 1 3 97 5 173483480 173484729 TCTGAACAGCAGACACAGAG 60 173483402 173483421 GTAAGGGCATCTTTGCATCC 59 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696 2 1 2 80 12 29071170 29071190 CGGATGGTTATCATCAACCAG 59 29071906 29073004 GTTAGAGTCGTCCTCATCTGG 60 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 1 2 2 80 13 52860361 52860380 CATGATGTGGAAGCCTACTG 59 52860421 52863396 GACGATAATGACCTTGATGGT 58 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 2 2 3 84 6 132773943 132773961 CTGTGAAGTAGACGTGTCC 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 3 2 2 80 2 256906228 256911026 AGATACCAGTTCGATTTCAGG 58 256906168 256906187 AATTCTGTCCTTCAGCAGTG 58 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139 2 1 2 80 18 17324790 17326198 GAGGATGACACTGAGTCTGG 60 17326241 17326259 CTCAGCATAGCTCAGACCC 60 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 1 2 2 80 4 115791245 115791263 GAACCTCTATGGCAGTCCC 60 115791307 115791655 ACACCTTCTCCCTTTCCTG 59 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 2 2 2 80 10 86828577 86831056 CACTCTCCGAATGTAAATCACC 59 86831094 86831115 CCGAAATGACTTGGGATATGTG 60 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000001215 1 1 2 80 12 30207487 30210423 CGGATATTACTTCAAGACGCTG 59 30210462 30210482 CTGGTATTGCTCACAAAGGTC 59 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 1 2 2 80 16 48940073 48940092 GTGGAGATCCTACCTTCCTG 59 48939920 48940033 ATTGATATCCTTGTTCCTGCAC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000078494 3 1 6 80 1 41555594 41561428 TTCCAGCCTAAGGAATCAAGG 60 41561470 41561488 AATCGACTTGACGTAGCCA 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 3 3 4 82 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832555 34835976 CAGATTTCAAGTCTGGCCTG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174 3 1 2 82 8 22294801 22297328 GACTGCACAGTGTACAAGG 59 22297373 22297392 AGGATGACAACAGACTTCCA 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382 1 1 2 81 4 24612227 24617020 CGTCCACGGATTATAGTACCT 59 24617186 24617204 TATCCTTGAGTTGGCTGGG 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382 2 1 2 81 4 24619319 24619708 CTCCCACTGTAGAAGGGAC 59 24623370 24623388 CCATATCCTTGGACAGGCT 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000029865 1 1 5 80 13 55114472 55120562 TATCTTCCAGGTGCCAACC 59 55114410 55114429 TATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000086117 3 1 2 118 11 87375984 87376002 CAGACAGAGGTGTCAGAGC 60 87376187 87376903 TGTTGGTCTGCATCATCGA 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978 3 1 2 81 11 87373773 87373793 TGCTTCAATATTGGAACTGGG 59 87373834 87373945 CCTTCTCAATCTTCACCTGGA 60 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 3 3 3 87 4 162086884 162087877 TGCATATAACAACTTGGTTCCC 59 162087924 162087943 TATGTAGTCCTTGCCACTGC 60 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356 1 1 3 93 3 118137360 118152170 TATGACAGATTGCTGAAGCT 57 118152225 118152244 TTATGTTCACTCTTCCTGGG 57 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 3 1 2 80 9 15624536 15625125 GAACAATTAACTGGAGTGATGG 58 15623982 15624000 CTCCATTCTCATCCACCAG 57 NA Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 1 1 1 60 1 16989125 16989144 CCATTAGCCAGACTAACCAG 58 16987927 16987947 ACAGATCTTTCACTTGCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 2 3 5 110 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572868 71579460 TTCATAGATGGCGACCTCC 59 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 1 2 2 95 8 116885170 116887269 GACTAGGTAGCCAGGTGTC 59 116885093 116885111 GAAGGTGAGCTTCCTCTGG 60 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 3 2 2 90 1 98517552 98517666 TCGTGATCATCATGAAGACC 58 98517481 98517499 TAATCCAGGATTGTGCTGC 58 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 1 2 2 80 7 126761648 126765315 CTGTGGACAATCTTGGAGC 59 126765358 126765377 GCTCAAAGACTTCCTCATCC 58 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 2 2 2 80 11 89034700 89034718 GAAGGAGACACCATTTCCA 57 89034551 89034658 ACCATGTTCATTAGTCTGGAG 58 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 1 2 2 88 8 49096435 49096726 CATGATCTGTGCCATCCTG 58 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000067954 2 1 3 81 4 27537849 27537867 CTTATTGTGGAGACCGCAG 58 27537911 27538380 ATACAGAGAAACCGTGAGCT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940 1 1 3 80 4 27585341 27592363 GCATCACCTGAGTATCGGA 59 27592407 27592425 GTCCGTAGGGTTACTGAGC 60 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 2 2 2 82 1 105142216 105154152 ATTATATCAGAGTGGATGGGCT 59 105154194 105154213 GCCAAGTATTTGCTCTTTGC 58 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 1 2 2 80 5 146661880 146661902 GATACCATCGTGTATTTCCACAG 59 146661942 146667897 TTGGAGTTCGTAGGCTTGG 60 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 2 1 2 60 18 17556857 17556878 CTTTCCTAAACCTGGAAGTGAC 59 17606013 17606032 CCTCTTCTGAAGACTGAGTG 57 NA DesignNoJunction Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 1 2 3 80 12 37625151 37625170 CCCAAGTAACAACAGTTCAC 57 37625210 37626997 CGAGTAATTTCTTCACCTTTCC 58 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 1 2 2 94 9 16465605 16466089 TCGATCTTATTGGAGACCCAC 59 16466224 16466242 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 2 2 5 89 10 56195687 56195705 GTACATGTGCAACAGCTCC 59 56195757 56196087 AGAAGATTCCCACTGGAGTC 59 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469 2 1 2 154 2 120313406 120316294 GATGGATGGCCAATTAGCA 58 120311266 120311286 ACTCCCTTGCTTTGTAAAGAG 58 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000005479 2 1 3 80 10 11075536 11075557 TTTGGAGAGTTCTCATCTTCTC 58 11071813 11075497 CCCTGTATTGATGGTTTCCTC 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000033017 2 1 2 80 17 1723454 1723472 CACAAGGAGACAGACTTCG 58 1715687 1723412 ACTGAAGAATTACTGTGAGGG 58 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401 1 1 2 85 12 37519722 37527652 GATCAAGCGACTGTTTAGCT 58 37527700 37527718 CAAAGGACTCGTGGATGTG 59 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 3 2 2 87 8 76426395 76427595 GAGCTCATACAGTCTCAACAG 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 1 2 2 141 2 200619950 200692119 AGAGGAACTGTCCAAGCTG 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 9 18 60 1 43508749 43508768 TGGATCGAACTAACCACCAG 60 43527519 43527537 AGTTAGGGCAATGGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000045144 2 1 18 103 1 43454882 43475249 GTCCAATGCTTGCATGGAG 60 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA InUTR Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463 3 1 3 118 2 235691789 235691809 GTGCAGATGGTCCTATAGGAC 60 235703211 235704473 TCCATCTTTGCCAGGTAGC 60 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 3 2 2 80 1 19090290 19092968 TCACTGGAGAATGTTTACACAG 58 19093009 19093027 CGTTCCGACATCAATGGAC 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884 1 1 2 80 13 57229170 57241251 AGGGAAATGATTGGTCTCAC 58 57243860 57243878 TTATCAATGCCACCGAGAC 58 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000026716 3 1 2 139 9 17689305 17693097 CTCATGCTAGCAGGTTTGC 59 17688191 17688209 GTCATCTTCTGGATTGCGC 59 NA InUTR Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161 1 1 2 80 5 134738190 134738997 TAGATGGGAATGGGTGCTC 59 134739041 134739059 ATCTTCCCTCTCCATGGTC 58 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 1 2 2 80 4 168616029 168616048 AGTACTTGGAGGAGTTGGTG 59 168616090 168618070 ACCACTGCTTGTACATTTCC 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195 2 1 2 188 9 17206856 17206874 AGTATCGGAACTGTTCGGC 60 17204706 17206705 TTTCCATCTTCAGCCTCTGG 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 1 4 4 113 18 56316004 56325240 GTACTGGAGCCGATATGTCC 60 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 1 2 2 80 19 10341168 10341412 CAGGAGATATCAAGACATCGG 58 10341108 10341129 TGACAATATTCAGAAGGTCCAC 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000025335 2 1 2 84 9 16953354 16953372 AAGACTGCAACACCATCTG 58 16952830 16953306 TAGGGATCCAGTGTCTGTG 58 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 2 2 3 80 6 136119893 136127002 TAAACTCACCAGAAGACTTCCA 59 136128838 136128857 TGTTCCGAAGATACATTGCG 59 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000089747 1 1 2 82 4 21541926 21551027 CTATTCTCAGTATCCTCCTTCCA 59 21551069 21551087 CTTGTCTCTTGGTGCTGTG 59 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 3 2 2 80 10 90379861 90380003 TCTCTGAGGGTGTATCTTGTG 59 90380045 90380063 AGCAGGATTTCCCATCCAC 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331 3 1 4 80 13 70240855 70245791 AGCATCTGGAAGAGGTGTC 59 70245834 70245853 TCCTTCCTCAAACCACAGAG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000006144 3 1 2 83 6 144118111 144123590 CCTGGGAAGAGAAGAACCA 59 144117049 144117067 GGGACTACCTGATTGTGCA 59 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 2 1 1 60 1 91072746 91072765 TGTACAGACTGACCATGACG 60 91072310 91072331 CCCAAGCAGTATAAACAGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 1 2 2 80 17 16367075 16367093 TAAGTACGAGAACCCAGCC 59 16367136 16369072 ATATTGTCAGTGACCCAGGA 58 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 2 2 2 80 4 168221645 168230126 ACCTGTAGTGCTCCTACCA 60 168221583 168221604 ACTCTGTTGTTCATCAATCACC 59 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 3 2 2 80 4 168235824 168235845 AGAGGGAGGTCATAATAGACCA 60 168235314 168235786 GGTTAGAACCAATGACTCTGTG 59 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 3 2 3 81 3 121835299 121835321 TGCTATAGGGAAACGGAGTC 59 121831730 121831748 GAAGTGAGCCATAGCTTGC 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 1 1 1 82 5 135396655 135396675 AGAATGCTTCACTTCATCCAG 58 135395741 135395759 CTGGCTCTGAGTCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069 1 1 2 80 3 15374118 15379231 AGTAGAGGAGGTGAAAGTCAG 59 15374058 15374079 TTATTGGTCTTATCGCACTGAG 58 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 1 2 3 80 11 34081105 34081126 TCCAGAAGAACCTGAAGATGAG 60 34081165 34083829 CTGAATTTCTCCTTGCTGGTC 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 3 2 3 80 11 34080916 34080937 AAAGTTACCAGACGGGATAGAC 60 34080976 34081101 TCACAATTTCTGAACTGTGGG 59 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 2 1 1 96 16 9074178 9074196 GACACCAATCAATGGGACG 59 9075381 9075399 CTCATTCCTCCTCATGGTC 57 NA DesignNoJunction Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000039677 2 1 2 131 1 217648633 217648651 AGACCAAAGGACATCCGTG 60 217645487 217648539 GTAGTGTGGGTAAACGTCCA 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000065521 3 1 2 106 13 69777982 69778001 AACTACAGCTCATCTGCCTC 60 69765630 69777919 GAGAAATATTCTGTTATGGCTGAGG 60 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 2 2 2 80 8 118621892 118621911 AGAACGTAGCAACTGAACTG 58 118621953 118622584 CAAAGAGGCAGAACTCTTGG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 1 6 6 80 7 132140938 132140957 ATTCACGAAGATTCGACTGG 58 132140133 132140896 CTGCATCATCTCTGGTTCTG 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744 3 1 2 84 8 25853523 25880797 GACATCGAGAGGGAGAGTG 59 25853457 25853476 CATCCTCCTCTCCATAGGTG 59 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298 3 1 2 91 17 27544217 27550116 TGATAGCACAGACAGCCAG 60 27544144 27544162 ATGTTGGCTGCTCTTTGTC 59 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 2 2 2 81 4 99976012 99979933 ATCCTCAAGTGCATGTTGG 58 99979977 99979996 TGTCACATTCTTCAGCAGTG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366 1 1 3 80 13 71107993 71108013 CTCCTTAACCAGAAGCATCTC 58 71108055 71112435 CCTTTGTTCTGTTGTTGGC 58 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817 2 1 2 82 4 7301400 7303968 GTACAGAGGTCTATGGCCA 58 7301054 7301072 TACTCAAAGACTCGGGCTC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 3 2 2 83 8 19888890 19890688 GTCCTTCTCCAGATTGGGA 58 19890735 19890753 CATCAGATGCTTCCTTCCC 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139 1 1 2 93 2 148609968 148652037 ATGAAGACAGTGCATCTGG 58 148652722 148652741 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506 3 1 2 151 14 820035 820056 AGTGATGTTGGTTACAGTGGA 59 820173 820191 ATGGAGGATGGAACCTGAG 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 1 2 3 82 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 1 2 3 80 16 10889647 10895050 CTGTGAGAAAGACTACATCAACC 59 10889589 10889609 ATAAACTTGTCACCAGCTTCC 59 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 2 2 2 83 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821383 144826168 GCGATATCATTGCTTTGCTC 58 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 3 2 2 80 4 66144874 66146419 GAGAACCCAAAGAGACCCT 59 66146459 66146481 TCCTGATGATATACTCCACTTGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 1 3 3 80 10 74457423 74467242 GGTAGAACATCAGTTGCGG 59 74467284 74467304 ACTTGCTGGAACATCATTAGG 58 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 1 2 2 80 1 184387168 184387186 CATCTGTCTTTCACCCAGC 59 184387229 184392550 TTGGCACAGTTTGATTAGGG 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000016967 3 1 3 81 2 257472177 257472196 GCAGAATTGAGCAGGATCTG 59 257467330 257472134 GAGTCATCTCCTTCCTGCTC 60 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 2 2 2 80 7 122131639 122134434 ACTCCACAGATTGATGGGTC 60 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 2 2 2 80 11 17129417 17129435 ACTGGGAACAGACAAAGAC 57 17080149 17129376 AGATTAGACTTTGGTACTCCCT 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 1 2 3 83 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 2 2 3 80 20 5094135 5094153 GAGTGATGACAGAGGAGGG 59 5094193 5094291 TATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 1 3 3 80 8 111078410 111079530 ACTCAGTAGAAAGGTCTCTGG 59 111078350 111078369 GCACATTATCCAAGACTCCC 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666 2 1 2 80 2 23290420 23292855 CGGCTTATTCCAGACAGGA 59 23292899 23292917 AGCCACCTCCAATGATCAC 60 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774 1 1 2 80 5 7735299 7747506 GGATTACAAGATAGTGAAACCCAG 59 7735242 7735260 AGAGAAGGCACAGACAGTG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045020 1 1 5 80 2 258794924 258800047 ACCCTTAATCAAGGACATTCAC 59 258794865 258794885 GTTGAAGTTACCATTTAGCGG 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000040566 2 1 5 107 2 258803598 258805537 AACATTAAGTCTTGGGTGCTC 59 258803511 258803529 ATAAGCCATGACAACGGTC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654 1 1 2 104 5 14297761 14297779 GGAGAATTTGGAGCAGCAG 59 14295175 14297695 TCAAATGAGCTAAGGTCCTGG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 1 2 2 80 1 127589305 127589324 CTTGCTCCATTTCTCTGCAG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500 3 1 7 80 19 15189765 15334682 CTAGGAATAGGAACCCAAATGG 58 15334722 15334741 CACCAATCTGCAAATACCCT 58 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 3 1 1 70 7 102586851 102586870 GAATTTCCTTTGGGAGGTGG 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000079883 1 1 2 92 4 65776204 65776222 CAGGCTTTGAAGAAGAGCT 58 65775548 65776150 ACCTAAGTTGGTTTCTGTCTC 58 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 1 2 2 80 10 110905682 110906719 CAGTGACTTTGTTGTCCGAG 59 110906762 110906780 ACCCGTAGGTGAATGACTG 59 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 3 3 4 81 8 124844302 124884184 TGTGTCAGTATATGACCGC 57 124844239 124844257 ATAGAAACAGCTGTCGGAG 57 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 1 3 4 80 8 124844301 124884184 TGTGTCAGTATATGACCGCT 59 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 3 1 1 61 1 5381531 5381555 GAAGTATCCAGAAGGAAATTCATCC 60 5387060 5387078 CAGTACTGAATCGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 1 2 2 80 12 40702376 40703017 TAAAGCAGCATGTGGAGAC 58 40703060 40703079 ACTTGACAACAGAAAGCTCC 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000063821 3 1 4 80 2 18522672 18552912 GCCTACTGCTTTAAACGACC 59 18522611 18522632 GGAAGTCTCAGTAGGATAGCAG 60 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 1 2 3 101 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967714 22967732 GTAGAAGGGATGGGACAGG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 3 2 3 102 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967715 22967733 AGTAGAAGGGATGGGACAG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 1 5 5 123 11 27868022 27876204 GATTGGGATTTGGAACTCCA 58 27865915 27867936 GGGCTCTTCCAGAATAGTG 57 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000010482 2 1 4 84 14 80071062 80071080 GTCAGTCTCTGTCCCTCAG 59 80054844 80071019 ATCTTATACTGTGAGTAGAGGCTG 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000074793 3 1 3 111 7 135550920 135550938 AACCTATGACCTGTCTCCC 58 135550826 135550846 AGCTTCTCCTACCAAGTAGG 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 1 2 2 80 9 27369484 27369504 CCATTCTCAACTACATTGCCA 59 27368418 27369443 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 3 2 2 80 9 27369486 27369506 AGCCATTCTCAACTACATTGC 59 27368420 27369444 GCATACATGTCGATGAGGG 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344 1 1 6 109 20 4614410 4614524 CGAGTACCGAGTGAACCTG 60 4614597 4614615 CTGTCAGGGATGAGTAGCC 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 1 3 3 80 19 15213422 15213440 AGGGCCATTTCTGAGAGTG 59 15213482 15215141 AGCAATCAGATTAGCAATGGG 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 2 2 2 80 6 91891993 91892013 AGATGTGGACCTCAATAGCTC 59 91888218 91890318 CTGAAGAAAGACTTTGAGTGTGG 60 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 1 2 3 106 3 48295247 48295265 TCAGATCTCCAAAGCCCTG 59 48293661 48293683 AATAGATGTGCTGGTGGCT 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000078044 3 1 3 103 6 3373063 3395690 TTTCGAGTGTTTCAGGCAC 59 3355308 3355327 ATTTCTTGCTGTACAACCGC 60 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660 3 1 2 81 17 29210778 29210797 TTTCTGGAGTGAGGATGAGC 60 29205609 29210737 GAACCATCTCTGAAACTTGACG 60 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000082462 3 1 2 82 12 38514411 38516437 CAACAACTGGCCTCTTCTC 59 38514347 38514367 TACTGAGACCCAGTATCATGC 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 3 2 3 81 20 5109838 5109856 TCACATGCTCTTCATGGTG 58 5108904 5109793 CTTGAAACCGTAGAGCCTG 58 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000002881 3 1 2 80 11 30385850 30385868 CCCACCTCCTATAACTCCA 58 30385636 30385807 CCAGCGATAGTAGAGTTTGG 58 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 3 3 3 82 19 15419657 15421200 TTTCTTCAAAGGAGTGGGCT 60 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000085332 1 1 2 85 9 92878367 92880330 CTCATTGACTTTGAGGGCA 58 92880377 92880397 ACAGTAGGAGTTCTTGTACCA 58 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000032792 2 1 2 80 8 94500711 94500729 TCCCAGCAGTCTTATGGAG 59 94494288 94500670 CCAGATCCTTCTTTGTTTCCAG 59 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000077125 1 1 2 80 1 175256111 175284098 ATCAATCTCCAGGGAACGA 58 175256049 175256067 TGCAAATACTTCTGCAGGT 57 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126 2 1 2 80 1 174950527 174950545 TAGAAATGGTCGTCCCTGC 60 174949816 174950486 TGGTCTTGAGATCAAAGAAAGC 59 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 1 1 1 78 5 58416568 58416586 TTGTAGGATGGCAACAGCT 59 58416965 58416984 TGGTAAAGAAGTTGTAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 2 1 1 62 11 28979104 28979122 CTATGGCTATGGAGGCCTG 59 28973583 28973601 TAGTAGGAGCCATAGCCAC 58 NA DesignNoJunction Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 1 1 2 80 2 24224273 24224804 GTTCTTCAAGAAAGGTTTGCAG 59 24224845 24224863 GGAACCTTCCTTCAGTTCC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000073696 1 1 6 86 13 84491837 84491860 TCTATTACTGTATCATCACCACCC 60 84491905 84522955 AACCTTTGCGAACCAACAC 60 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034 2 1 2 113 9 27642216 27642234 GATGAGAAGTCGGTCTCCA 59 27630489 27639494 AAAGCTCAGCTTCTGACTG 58 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000078122 3 1 2 80 7 18600682 18600949 CTTTGCAGAAAGAAACTTGTCC 59 18600623 18600643 AGGATGTTCTTGAATGCTTCC 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033 2 1 3 86 11 31147287 31147305 CCATGTGGTCTGTGAATGG 59 31144992 31147237 TTAACTTTCCAGCCTTGGC 58 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000065535 3 2 3 92 11 31116615 31117712 AAGAATTTGGAGGTGTCGG 58 31115541 31115559 TATCTTTCCGTGCTGTTCC 58 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 2 3 3 80 1 135836244 135836262 TACGTCTCCTTCCTCTTCC 58 135834659 135836200 ACGTGCTGAATTGTTTCCA 58 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000011224 3 1 2 195 3 9936327 9936606 TGTTGCCCTACTGGATCAG 59 9926867 9927754 CGCCGTGTACTTGTATTCC 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217 2 1 3 189 4 147686603 147692070 AAGACTTCAGGTTCATGGCT 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000037708 3 1 2 112 7 15072934 15072952 ACACCTTGAGGAACCTGTG 60 15071204 15071224 ACAGAGTTTCTCCAACAACTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 2 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804059 GCATTGGTCATCTTGTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000080778 3 1 2 83 8 117343828 117344212 GACTGGCCAGAAAGTTACAG 59 117344258 117344276 TAGAGCTTGATGGGACACC 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 1 2 2 81 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473130 38473148 GTTGATGACATCTCCACCG 58 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 3 2 2 81 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288259 206288277 ACTCAATACCACCCAGGTC 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000091084 1 2 3 81 12 37900826 37900844 CTCCATCAGCCTTTCTCCC 60 37900888 37900989 TGTGATGAACTGACACTGCT 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000034991 2 1 3 89 6 10348323 10349064 GAGAAGCATGAGAGCAGCT 60 10349116 10349135 ATAGAAGACCTCCGTCTCCT 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526 2 1 2 81 1 229077694 229078805 CTGATTTGGGTTCCCAGTC 58 229078849 229078868 TCTGAGTGTTTGACTTGGAG 58 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000085060 2 1 2 80 8 21521987 21522758 CTGTTACCAGGATTCAGTGAC 59 21521927 21521947 TGAGTCAGGTCCAGTAAAGTC 59 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025600 3 1 2 85 2 205856622 205856641 CCAGCATTACCAAATCCCAG 59 205856686 205858230 CTGAGTCAGCTTCATTAAACCT 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 1 2 3 80 20 4534115 4534220 CCCTTTCCGTAGGTCAGAC 60 4534260 4534282 ATGTCCTCTCCATACACATACAG 60 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000042082 2 1 2 86 9 98398207 98398225 CTCGGAGGGTTTCTGTGAG 60 98406832 98418598 CCTGGTAGTAACCCTCATAAGG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 1 5 10 82 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 102 10 109900902 109903324 AACTGAAAGTGGTCGGGAG 60 109903388 109903408 GAGATTTCTGCCTCTTTGAGC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 2 2 3 82 2 27003790 27003810 CTGATGAGGACAAGTGTTCAC 59 27003850 27006172 TTCATATTCCTCCTGAAGGTCTG 60 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 3 2 2 80 7 13045339 13045623 TTCATCGACCAGAGCAGTG 60 13045667 13045685 CTCAGAGATGGGCTCTGAC 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 2 2 2 60 9 42882402 42882420 TGAGAAGCTGAAGAAGGCC 60 42882444 42882806 TTCTGATGTGGTCTGGTCC 59 NA DesignRelaxed Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818 1 2 3 85 11 35696795 35749413 ACTATTAAGGAGGCCTTGTCAG 60 35696731 35696749 TCTGTCTTAGCCAGGTGTG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 2 2 2 85 9 15610529 15610547 TCTTTGGCCTCAAGAACCT 59 15610594 15618404 ATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 3 2 2 80 11 38082811 38083311 TGCTTTGGAAGTTCTGGGA 59 38082749 38082768 GGGAGGAGCTGATACATGTC 60 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000060832 1 1 2 98 20 5133560 5133661 TCTCTGGAGCTCTACAGGG 60 5133723 5133741 CAAGAACAGGCTGCATGAG 59 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 3 3 3 80 14 6436677 6436696 CTAGATACAGGCTTCCTGCC 60 6435917 6436636 GTGTAGCAAAGCCCTAAATCC 59 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 1 2 3 80 1 169454327 169455688 GGAGTATAAGGAGAAGCTGC 58 169454266 169454285 AGGTCATCTTTCCAGTTCTC 57 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000090323 1 1 3 94 3 43293235 43294088 GATGTTGAACAGTATAGGATGGTG 59 43294141 43294159 ATTATAGGCAGCGGAGCTG 60 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 3 2 2 81 8 44063193 44063506 CTGGAAAGTGAGGTTCCAG 58 44063551 44063569 GAAGAGCAACCATCTCTGG 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 3 2 4 168 1 201226086 201238798 ACATCTGACAGTCCAGAGC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 2 2 2 85 10 90231208 90232778 AACCTTATGAGCGTGGACC 60 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 80 13 91228836 91228854 TGGAAGCCAATGGCTACTC 60 91154513 91227999 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728 1 1 2 80 3 57946315 57957211 ACCAAGGATGGGTTGATCTC 60 57946254 57946276 CACTATGAACATGGAATCTGGAG 59 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000022074 3 1 2 125 8 49713238 49715433 TGTCAGCTAACCATGGTGG 60 49715808 49715826 GGAGAATGAGGAGTCCCAC 59 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 1 2 2 80 8 82339041 82339059 ACTTGGTGCTGAAGATTGG 58 82337333 82339001 CTTCAGAAAGATGACCCTTATGG 59 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000091747 1 1 2 106 3 22413272 22458901 ATATCCTGAGGTGCAGAGG 58 22381232 22390106 TAACTGAGAGGCTGTCCAC 59 NA Rattus norvegicus 81 Mgst3 ENSRNOG00000004245 ENSRNOT00000005719 2 1 1 80 13 85606389 85606409 ATGTACAGCACAGATCCTGAG 60 85604624 85606347 AGGGTACACCTCCAATGTG 59 NA Rattus norvegicus 81 Etfa ENSRNOG00000015233 ENSRNOT00000020544 1 1 1 80 8 60072494 60076825 AAATGTGACAAGGTGGTACAG 59 60072434 60072453 TTTGTACGCATCATGCTGAG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000024763 ENSRNOT00000034026 2 1 1 60 X 21313761 21313780 CTTTCAATGTGATCAACGGC 58 21313718 21313737 ATCATGAACTCTTGCATGGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0878.6 ENSRNOG00000051172 ENSRNOT00000076076 1 1 1 60 10 87936673 87936691 TAATCAGCAGGAAGCAGTC 57 87936631 87936649 TCCAGGTCATACTTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc2 ENSRNOG00000022686 ENSRNOT00000036092 3 1 1 85 16 54976526 55001984 CTGTGCATAGTGTCCATGG 58 54975309 54975327 GACCAGACAAACATTGCGA 59 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 3 1 1 81 1 169973074 169973093 CCATGTACTATCTGCTTGCC 59 169971949 169973031 AAGATAAGCAGGACCTTGGG 60 NA Rattus norvegicus 81 C2 ENSRNOG00000051235 ENSRNOT00000060607 3 1 1 80 20 4552283 4553459 TGTCTGCTACAAAGATCACG 58 4552222 4552243 TTATTCATCATGAGGTAGACGC 58 NA Rattus norvegicus 81 RGD1563441 ENSRNOG00000021540 ENSRNOT00000012061 3 1 1 156 10 55940906 55940924 GAGAGGATGGAGAGGACGA 60 55941044 55941162 GGACAGTAGAGCACATTGC 59 NA DesignRelaxed Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 2 2 3 80 14 83344922 83345147 GCTTGCACAGTGTGATCAG 60 83345190 83345209 TTACTTGCTCCACCTCAGAG 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000074532 2 1 2 84 20 47225860 47253676 AGGGTCAAGACCAATCTTCC 60 47253724 47253742 GTTCACTTCGAAGCCACTC 59 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 3 1 3 80 10 59556434 59556452 CTTCAGATGTCTCTGCCTG 58 59556496 59556903 CTCAAGAACACCATCCACG 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000078001 1 1 2 94 3 43113046 43113171 AGTGGAGGAATATGAACATCGA 59 43112825 43112843 TCTCTTGGGTTCCTTGAGC 59 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000064140 1 1 2 110 8 118323043 118323062 CATTCACCCTACTGGGAGTG 60 118323135 118323831 TGATGTAACCACATGCCGT 60 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 1 2 3 145 14 81014704 81037658 TGATCTCGAGTCTGCAACTG 60 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 1 2 2 80 2 210449991 210450468 CAGACAGCGGTATTGATTGAG 59 210449931 210449953 CTGAGTTGAATAGATGTTGCAGG 60 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000083659 3 1 2 104 8 32545800 32545906 AGGCTTTCTGTAAGCAGGA 59 32546707 32546725 GTTTCTCCTCTCCTGTGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305 2 1 2 83 8 118393836 118393854 ACTGAGGACTTCATGAGGC 59 118393901 118395799 GTAGGACAGATCCCTGTCC 59 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 3 2 2 80 2 116364364 116369571 AGTGAAGCAGTTACCACCA 59 116364302 116364323 AAGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 3 2 2 80 1 219135373 219135393 GGATGACCTTTGTCATCTCCT 60 219135128 219135333 CATGACAGTGAAAGCAGTCTG 60 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770 3 2 3 81 10 89181819 89181838 TCCTTCAAGACCGTGTATCG 60 89181882 89183349 AGAGTTTCCGAGTCTGCAG 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000075057 1 1 2 127 2 31751773 31753438 GAAATGGATCCACCAGCAC 59 31750827 31751686 ACTTCTTCCCTTGAGATATCTCC 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907 2 1 2 80 2 137395579 137396761 TACTTTCCTCACCAGATCCA 58 137394095 137394115 ATATCCTCAGGGAATATGTGC 57 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 3 2 2 82 1 70260158 70260179 GCCAAAGAGAATGATACTCCTG 59 70260222 70264200 GTCTTCTTCCCTGCAGAGG 60 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 1 4 5 81 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 2 2 2 80 8 118871496 118873074 GTAATCACGAGACAGACTCAG 58 118873116 118873134 CTCAGCTTCATGCTCAAGG 59 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000088331 2 1 2 187 10 89166948 89167809 CTCGCTGTCTCAACCTCTC 60 89168397 89168546 AGGTTGCTGTAATACCTGCT 59 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 2 1 2 86 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561900 83562975 TGTCTCTTTGTCACCAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 1 4 5 80 8 99640718 99640737 CGAGAAGTCATGACTCTGGA 59 99640777 99640898 CTGGATTTCTATCTCCTGGAGG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000086524 3 3 5 80 8 99640987 99641005 ACGTTCTAAAGGTCGTTGG 58 99641046 99643772 CCTCATCTAGAGATTTGAGCTC 58 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082408 1 1 4 80 9 47030717 47034227 ATACCCAGCTTCAGATGGA 58 47034270 47034289 AAGTATGCAAAGGATCCCTC 57 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 3 3 4 81 9 47030664 47030685 ATCTGCTTCGTTAAGAACACTC 59 47030722 47032112 GGTAATTCTTGAAGTCAGGAACTG 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 2 2 3 82 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294627 89294647 TGATGAGACAGTACCTCTGGA 60 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000079797 3 1 2 98 8 52168572 52186857 AGTTCACGATTCTCGAGCA 59 52186919 52186937 CATAGCATGGCAAACACCA 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 2 1 1 60 3 168131001 168131021 CCAGGAAATGTTAGAGGATGC 59 168132360 168132380 GGACTCTAAGGCATTGATCTC 58 NA DesignNoJunction Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142 3 1 2 163 8 128790555 128794275 ACGCTCATGTTACATCCAG 58 128795219 128795237 AAGAACACAGACAGCATCC 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178 3 1 3 84 X 23124624 23144187 AGAGAACAGCCTCCATACC 59 23124558 23124576 ATGTAGGTCTTGCCTCGAG 59 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805 2 1 2 84 20 54269466 54517311 ATGTGTTAAGATTCGGTGGT 57 54269401 54269420 TTCACAGCAAATCTGAATGC 57 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 3 2 2 104 1 101085491 101085512 GAATTTCCAGTACGACCATGAG 59 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 1 2 2 87 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616320 128616338 CATGTTGAACACCTCCAGC 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000090186 1 1 3 90 5 61587768 61587786 AGCTAAGGCTGATGTGGAC 60 61587840 61589829 CTTTGGACTGAACCTGCTG 59 NA Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 3 1 2 60 14 85312062 85312081 TGGGAATTAGAGGCAGTAGG 59 85312281 85312299 AAGCTCCAGTCTTTAGGGT 58 NA DesignNoJunction Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 2 2 2 80 8 22853902 22853921 CTTCTACCATGTTAGCTGCC 59 22853733 22853861 TGTAACAGAGGAATCCAAGTG 58 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000090424 2 1 2 81 8 22825596 22825617 CCTGGATGAACAAGAGTTTGTG 60 22825448 22825555 ATAGAACTCCTCTAGCCGGT 60 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487 1 1 2 101 10 95255128 95255148 ACTACAATCCCAGTGATTCCC 60 95250577 95255065 TGTTATGAGACCTGCTGGC 60 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822 3 1 2 82 8 132120519 132135488 CTCCAGGAACATGCTTGTC 59 132135533 132135552 TTTGGTACTCAATCGTGTGG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000083487 2 1 2 80 9 53706331 53706351 ACCAAGTTAAAGAGCTGATGC 59 53706393 53708461 CCTTTCCCATGTGCAACTG 59 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 2 1 2 94 5 157899480 157899498 TCCTAACCTGAACCAGAGC 59 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 3 2 3 81 8 96132535 96132553 CAGACATTGCTTGATGCTG 57 96129136 96132490 CATACTTCCTCTGACCTGC 57 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654 1 1 3 90 7 66740020 66743115 GCACAGAGATATAGACCCTCC 59 66743167 66743185 ATATGCGTCTTTCGCACAG 59 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143 2 1 2 88 5 157347612 157347630 CAGAGTGGAGACCAGTGAG 59 157346796 157347560 GCTTGTTTGTGACCTTCGG 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000083387 3 1 2 112 9 1631894 1635616 ACAGTTGAACAAAGGCGAC 59 1654481 1654499 TCGGAGATGAACTGATGGT 58 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50705165 50705184 GGACTCAGCTAATGAATGGG 58 50705225 50706519 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000067486 2 1 2 91 16 50373568 50379264 ATGACAATGGGTACCACTG 57 50373495 50373515 ATCGATAACCTCGTAATTGGG 58 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023 3 1 2 83 16 50379269 50379287 CTCCTTCCAGTCAGAGTCC 59 50373562 50374550 GTATCCCAGTGGTACCCTC 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 1 3 3 80 2 216375814 216375835 AGAAGTGACCATTAATCCAGAC 58 216375648 216375774 ACCATGTTCCTGATTTGACG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 3 6 8 93 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365886 4365904 CATTCTCTGGCATTTCCGC 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 3 3 8 89 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364299 4364317 ATCAGAGGTTTCCCATCCA 58 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000014152 2 1 2 129 1 131454165 131454183 GGAGGAACCTGAGCTACAC 60 131452451 131454072 CTCTGTACAGCTTCCCGTC 60 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 1 2 2 80 1 73730894 73730913 AGCAACAGTACTACCAGTGG 60 73729829 73730851 TCTGGTACATGCTCATGGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 1 5 8 80 20 4389081 4389099 GTCTGTCATGGATGAGCAC 58 4388931 4389038 TAGTCCGTGTCTCCATACTG 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 1 1 1 77 8 43534538 43534556 TTCCTCTTCAGGCCTTAGG 58 43534447 43534465 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000087753 3 1 3 81 8 127243010 127243030 ACTACTGTCCTAAGATTCCCT 57 127243073 127245683 GAGGTGAGGTGAACATCAG 58 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000072577 2 1 2 83 2 34547130 34559269 CTTCATGGACTGGTGTCCA 59 34559313 34559334 GGTCACAGAAATTGTTCTGGAC 60 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000080257 2 1 2 90 3 2716628 2717613 ATGCAGAGGACTGGTTACTG 60 2716557 2716575 ATGTTGAGAGCAATGGCAG 59 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849 2 1 2 130 3 164048716 164048736 TTCATGAGCTCTTCTCCAGAG 59 164041132 164047818 CAGACACAGGAAGGAGTCG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152 2 2 8 81 20 4485780 4485798 CTTCCGAGTAGACTCAGCG 60 4485842 4485933 GTAGCTCATAGAGTCACCCG 60 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215 1 1 2 84 2 227199238 227206859 GAAATCCATGGACACGATGTC 60 227199174 227199198 GGGACAATTCTTCTATCATGATGTC 60 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000055030 1 1 2 81 3 176854355 176854373 CAACGATGTAGCTACCAGC 58 176854417 176854928 CTCTCCTTCCTTGCTTACTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000055030 3 1 2 90 3 176854415 176854925 GCCAGTAAGCAAGGAAGGA 60 176854979 176854997 GATTCAGGTGCTCTCCAGG 60 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 1 3 3 80 20 48563763 48564813 TTGTACAGTGGGACATTCG 58 48564855 48564875 CAAAGACAATCGTGTTGACAG 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000057078 1 1 2 94 20 49325082 49325101 TTCTTGCATCAGCTCAGCT 60 49332314 49332332 CTCAACTGCATCCTTGCAC 60 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000050637 1 1 2 80 16 74551267 74551286 GCCAAAGACCTGTCTTTCTG 59 74551324 74552023 GAATACAAGGCTGTTATTCCTTCC 60 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000012915 2 1 2 90 5 61713163 61715430 GGTCTCAGAATGTTCATATTGTGG 60 61713096 61713115 AGAACAGGTCAACACAAGCT 60 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000065497 1 1 2 80 5 156682868 156683580 GAATATCTCGGCAGGATCCT 59 156677513 156677531 CTGTTTGCTGAACCCAAGG 59 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 2 1 2 86 5 156681757 156682199 TCCTCGTTATGAAGAACTACCC 59 156681692 156681710 AGGTCATCATGGTAGCCAG 59 NA Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 1 2 2 80 16 62056684 62056702 CTCGTAGGGACTCCAAACC 60 62056746 62086665 TGTGAGCTCATATGGCTCC 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 1 4 4 112 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358566 AAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 2 1 1 62 3 150156782 150156800 CTAAGTCAGAACCTGCAGC 58 150155808 150155829 ACATTGGTACTCACTAGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803 2 1 2 108 3 64338565 64362753 CGAACTTTAACACAATGGACC 58 64338477 64338497 AGCTGACAGACATTACAAGAG 58 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429 1 1 2 200 3 65816753 65818550 GCTAACAGAATTCAGAAGGAGC 60 65864537 65869286 GAAGGTAACCTTTGGTGGC 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000018697 2 1 2 93 3 176810854 176816044 CCGTATCTGCCTACAAGGAG 60 176810780 176810798 TAGATGGTGTTCGGGTGAG 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000018697 3 1 2 94 3 176810856 176816045 ACCGTATCTGCCTACAAGG 59 176810780 176810798 TAGATGGTGTTCGGGTGAG 59 NA Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 2 2 2 80 3 80079254 80079276 GACTTCTCTTCTTCAAGGATGTG 59 80079316 80079437 GGAGCTCATGGAACTTGTC 58 NA Rattus norvegicus 81 SNORND104 ENSRNOG00000051842 ENSRNOT00000077717 3 1 1 61 5 153909203 153909222 GTTGACTTCCTATGCAGAGC 59 153909161 153909179 CAGACTCCGATTTGCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052446 ENSRNOT00000078595 2 1 1 86 5 116944916 116944934 ACCCTGTGCATTCCTACAG 59 116944980 116945002 TTCTATAACCTTGCTCTGGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059772 ENSRNOT00000078697 3 1 1 65 5 72221598 72221616 CACATGTGCATCAGAAGGT 58 72221551 72221569 CACAGGTCAGAACACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059800 ENSRNOT00000080157 3 1 1 60 2 126678670 126678688 TAGAGGACTGCAGGTATGG 58 126678628 126678649 CTCTCCTCTATGACACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056961 ENSRNOT00000088344 1 1 1 60 2 76072844 76072864 CTCTCCATAGAATTCTGGGTG 58 76072804 76072824 GTTGAGTTTCCCATATGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060458 ENSRNOT00000087565 1 1 1 64 5 171157607 171157627 GGTATTACTGCTGTGTCACAC 59 171157653 171157671 AGTGCAAACATGGCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059502 ENSRNOT00000082265 3 1 1 79 5 113926628 113926646 TAACTAAGCCGGCCAAGTC 60 113926567 113926585 TACACTACCAAGGAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059004 ENSRNOT00000078950 2 1 1 92 2 240904134 240904154 TAAGAGCAAGTGTGGTATCTG 58 240904062 240904080 CTACACAGGCAAAGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000054115 ENSRNOT00000088135 3 1 1 72 2 119156571 119156590 TGCAGCCACTTAAGTAACCT 59 119156625 119156643 ATCACCAAGAGTGCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007645.1 ENSRNOG00000036436 ENSRNOT00000054548 1 1 1 60 2 21942289 21942312 CTCTTAAGAATCATCCTTTCCAGG 59 21942330 21942349 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058729 ENSRNOT00000077493 3 1 1 61 2 237871872 237871890 CCATGTCACTGTGCATCAG 59 237871829 237871850 GAACACTGAATGTAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060003 ENSRNOT00000086700 2 1 1 60 5 105094239 105094261 CTCACAGATTCATCAGTACTCCT 60 105094280 105094299 GCTCAACAATCCATCAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 2 1 1 65 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762811 13762832 ACCTTACTAGACAGGTTAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058395 ENSRNOT00000081859 3 1 1 61 16 71209010 71209028 CAGTGGTGTCCTGGTAGAG 59 71208967 71208985 GTCCCTAGGATCCCTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056523 ENSRNOT00000079322 3 1 1 61 8 101915561 101915579 CTTATCCATCGCCCTCCAG 60 101915602 101915622 GTTGTGTTTCCTACATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060368 ENSRNOT00000079018 2 1 1 60 5 169380814 169380833 CACCAAACAAGCTTCAAGAG 58 169380773 169380794 AGATGAATGATTCTGGCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057119 ENSRNOT00000090670 1 1 1 60 8 68024860 68024878 GAGAAGATTAGCATGGCCC 58 68024902 68024920 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052965 ENSRNOT00000082169 2 1 1 64 8 91224321 91224339 TTTGCTGTGGACATGACCA 60 91224275 91224296 TGCTAGTCAAGTAGCATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048075.1 ENSRNOG00000046591 ENSRNOT00000072391 1 1 1 60 5 60516480 60516498 CTCTGTGAGTTCAAGGCCA 60 60516521 60516540 TTATACTCCTGGCTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 1 1 1 60 5 59494931 59494951 GTGGGAAAGAAACTGTTACAC 58 59494968 59494991 CCCATATTCCTCTTTCTATGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hammerhead_HH9 ENSRNOG00000051617 ENSRNOT00000086203 3 1 1 63 5 59378593 59378611 GTTACCTGCAGCTGATGAG 58 59378637 59378656 TTAAGCCAGTACTGCAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056286 ENSRNOT00000079873 1 1 1 60 11 27171116 27171137 GAGGATATGACTACATCCAGTG 58 27171077 27171098 AGGCTACTAATCAATCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055026 ENSRNOT00000085820 2 1 1 63 2 5782550 5782571 ACAAAGAAGATTAGAATGGCCC 59 5782508 5782526 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058307 ENSRNOT00000087587 2 1 1 60 2 223128687 223128708 AGTACAGAGAATTATCATGGCC 58 223128726 223128747 ATGGAAGCTTCATGAATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058807 ENSRNOT00000084459 3 1 1 60 2 175713514 175713533 TCATATGTGCATCAGTCAGG 58 175713473 175713493 TTCATAGATCAGCACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056546 ENSRNOT00000083499 3 1 1 61 11 67543368 67543389 TAACATTGGAAGGATACAGAGG 57 67543405 67543429 CCTTAATTAGTATGTCATCCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051434 ENSRNOT00000080715 3 1 1 72 11 43947904 43947922 GTTATGGCTGCTGTTTCAC 57 43947955 43947976 GAATACTCATTGTAGACACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054745 ENSRNOT00000079195 1 1 1 71 11 34658378 34658396 TACTTGGCATGGGAGATGG 59 34658431 34658449 ATCCAGAGTGCAGTGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059595 ENSRNOT00000077354 1 1 1 60 16 36628272 36628292 ACGGTACAGAGAAGATTAGCA 59 36628232 36628250 ACGCTTCACAAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056035 ENSRNOT00000090043 3 1 1 63 11 67567113 67567134 CAGCAGGTCAATTTAACATTGG 59 67567071 67567090 ATGTCATCATTGAGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053847 ENSRNOT00000079303 1 1 1 60 2 83035341 83035361 ATCAATACCTGGCAGAAAGGA 59 83035301 83035319 TGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060639 ENSRNOT00000090570 3 1 1 63 11 14141014 14141034 ACAGAGAAGATTAGCATGACC 58 14141059 14141077 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051550 ENSRNOT00000086050 1 1 1 60 16 77847898 77847916 CTTTGAAGCATGGCATGTG 58 77847856 77847876 GCCTCTCACTTCTCTACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057551 ENSRNOT00000078181 1 1 1 60 8 32366178 32366198 GACAGAATCACAGCCAATGAG 59 32366219 32366238 GTCGCACTTTGAATTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055668 ENSRNOT00000087388 3 1 1 60 2 255121128 255121147 TTTGAATGAAGGAAGCTGCT 58 255121087 255121108 GCTACTAATTCAGATGTTCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052158 ENSRNOT00000089307 2 1 1 60 8 122040918 122040937 GTCACATGTACATCAGGAGG 58 122040877 122040897 GTCTGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070441.1 ENSRNOG00000051744 ENSRNOT00000085200 1 1 1 60 8 70204457 70204476 ATGCTTGTGGGCAATAAGAG 59 70204416 70204436 TTGCTTCATCTGTAGGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000052277 ENSRNOT00000078472 2 1 1 60 16 10631129 10631150 CAGTCAGTAATTTACACAGCCA 59 10631090 10631109 CGGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071210.1 ENSRNOG00000023330 ENSRNOT00000037171 1 1 1 62 8 104949515 104949533 CTTCGCTAGCAAACAGGTG 59 104949559 104949577 ATGGTTCTGACCAGTTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.1 ENSRNOG00000051568 ENSRNOT00000079345 1 1 1 60 1 155954890 155954909 CAAGTTGCACAGAAATGGGA 59 155954849 155954868 TCTGAAGACTGTCACGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061334 ENSRNOT00000079395 3 1 1 60 6 133828795 133828814 ACCAATGATGAGATCTGGTG 57 133828835 133828855 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000059106 ENSRNOT00000080307 1 1 1 60 6 133770711 133770730 CAATGATGACAAGGTTTCGG 58 133770751 133770771 CAGACTGCTAGAGATGTAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056178 ENSRNOT00000085819 2 1 1 60 6 74466473 74466491 TCGTACTGTAGCTGTTGGT 58 74466513 74466533 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055514 ENSRNOT00000088718 2 1 1 60 X 152074555 152074576 AAGAAGCATTGCAGTTACAGAG 59 152074516 152074540 ATAGGTCAGATCACTGAGAATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000057500 ENSRNOT00000078315 2 1 1 108 6 115337029 115337048 CTATAGGCATGGCACTAGGA 59 115336940 115336961 CCGCAAATTTCAGAGAATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035368.1 ENSRNOG00000054882 ENSRNOT00000091384 2 1 1 60 12 11364213 11364232 AAAGGAGAAGGAGAGGAGTG 59 11364172 11364192 CTCCTCCTTTCCTTCCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.2 ENSRNOG00000046102 ENSRNOT00000075611 3 1 1 60 1 121202909 121202927 TGATCAGTCAGGCTACTGG 59 121202867 121202886 GGCTTTGGTTATACCCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055269 ENSRNOT00000089917 3 1 1 62 X 105325837 105325855 AATACCGAGAAGAGTGGCA 58 105325880 105325899 AAGCCCACTTCACAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051947 ENSRNOT00000080639 3 1 1 60 6 144539605 144539623 ACGTTCCCTTCTTCCTTCC 59 144539644 144539665 AGCATCAAGTTTGTAGAAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 3 1 1 65 2 192520890 192520908 CATACCAGCAGAAATGCCC 59 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056006 ENSRNOT00000083035 1 1 1 60 X 44184112 44184131 TGCACCTAGAAGCATTTCAG 58 44184152 44184172 CTCCATCACCTACTCATACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054491 ENSRNOT00000079930 1 1 1 60 9 65335354 65335372 GGTTGGAATAGGAGCTTGC 59 65335312 65335331 CTGGAGGTACTGCAATACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073039.1 ENSRNOG00000028747 ENSRNOT00000034810 2 1 1 140 4 118705429 118705447 GATCACTGTCACTTCCGAG 58 118705305 118705325 ATCTGGAAGTACAGCTCGT 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000055947 ENSRNOT00000084094 1 1 1 105 2 205485329 205485347 GTTGATTCGGCTGATCTGG 59 205485242 205485260 GAAGGTCGTCCTCTTCGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059488 ENSRNOT00000084696 1 1 1 60 2 181031093 181031114 ATACAGAGAAGATTAGCATGGC 58 181031134 181031153 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057864 ENSRNOT00000079306 1 1 1 60 2 213301994 213302014 AATAGAGGAGGACCGAATAGC 59 213301954 213301972 TTGGGCAAATCTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058769 ENSRNOT00000085705 1 1 1 60 6 81053912 81053932 GAAGGTTAACACAGACCTTGC 60 81053872 81053890 CAGTCTTGGGACCATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071814.2 ENSRNOG00000053687 ENSRNOT00000078308 3 1 1 60 8 131966154 131966173 CAAGTGTAACGAATGTGGGA 58 131966194 131966214 TCGCAAATGGAGAATAACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000052635 ENSRNOT00000081700 2 1 1 60 X 13904824 13904844 TGGCTGGATTCTATTCTCCTC 59 13904784 13904802 CCGACACTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051441 ENSRNOT00000077183 1 1 1 60 X 113457024 113457042 CTTGAAACCAAGAGCTCCC 59 113456982 113457000 GAGTCCCTTTATCGTCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055218 ENSRNOT00000086151 3 1 1 60 2 128826142 128826162 GATGAAGAATGCAGCTACCTG 59 128826183 128826202 TTCCATGATCAATGCGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061036.1 ENSRNOG00000053228 ENSRNOT00000090283 3 1 1 82 4 103024462 103024807 TTTGGATTCCAGCTTCCAG 58 103024398 103024417 AGAAGCTTGATCTCCAAGTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058895 ENSRNOT00000083704 2 1 1 60 17 12876625 12876643 CACATGTGGGTCTCTTGGT 60 12876665 12876685 GTCAGAACCCTGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055016 ENSRNOT00000086386 2 1 1 60 9 15830755 15830776 TGTCATGATATAGGGACATGGC 60 15830716 15830740 GGACCACTCCATAAATTTATAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061529 ENSRNOT00000089851 2 1 1 66 2 122323226 122323247 GCAGCACATATACTGAAATTGG 58 122323273 122323292 TCATGTCTTTCTTGCAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059357 ENSRNOT00000084517 2 1 1 60 16 20568027 20568046 CAACTGACTCCTGGCTACTC 60 20568068 20568087 ACTTCTCCTAGCAAGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Pi15 ENSRNOG00000017686 ENSRNOT00000023899 2 1 1 81 5 795579 796519 ACTGGAAGATATCGCTCTATTCTC 60 795521 795539 CCTGAGGGTAAGGAAAGGC 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000059895 ENSRNOT00000082168 2 1 1 72 16 22497870 22497888 CAAACCAGTCCCTTTCTGC 59 22497816 22497834 GAATGCACTCCCAAGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061907 ENSRNOT00000084693 2 1 1 60 16 28643322 28643340 TCCCAATAAGGACCTGGTG 59 28643364 28643382 CTTCATACCCTACCCAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000058029 ENSRNOT00000083186 3 1 1 60 16 58940271 58940289 TCGTACTGTAGCTGTTGGT 58 58940311 58940331 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057777 ENSRNOT00000090516 1 1 1 60 7 45060776 45060796 GTCACAGTTGAATCAGAAGGA 58 45060818 45060836 CACAGGTGAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000087649 3 1 2 60 5 47847429 47847450 TATTCTTGAGTCGTCTTGAGAG 58 47848502 47848523 AAATTCACCAGGTACACTTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000054789 ENSRNOT00000087705 1 1 1 60 3 12600244 12600265 GACAGTCCTTTATTCATCCCAG 59 12600205 12600223 AGGCATAAGACAGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041705 ENSRNOT00000063458 3 1 1 60 7 67029070 67029091 ACACATTTGATCCTATCTGAGC 58 67029031 67029050 TCCAAGAACCAATCAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056004 ENSRNOT00000088560 1 1 1 60 16 47954616 47954636 TATGAATGCTATCCACAACGG 58 47954576 47954595 AGCAGGCTTCATACACTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054364 ENSRNOT00000089431 2 1 1 60 1 94897818 94897839 AATACAGAGAAGATTAGCCTGG 58 94897779 94897798 GAATGCTTCATGAATTCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060692 ENSRNOT00000078334 2 1 1 60 16 41019740 41019759 AGGTGGCAGAGAAGATAGAG 58 41019699 41019718 TTCAGATGCTCGTAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054927 ENSRNOT00000081233 2 1 1 60 10 28417699 28417719 AATACACTGACTATCAGGCTC 57 28417740 28417759 GAATGGGAACATCTCCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000059358 ENSRNOT00000091062 1 1 1 60 X 65279882 65279902 TATAGAACCAGCCATGAAGAC 57 65279842 65279862 GGATTGTTGCCTTCTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068746.1 ENSRNOG00000059493 ENSRNOT00000085020 1 1 1 60 9 117439561 117439580 CATCCTTCGAGATTTCCTCC 58 117439520 117439538 GGTAAGCTTGTCTTCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039377.1 ENSRNOG00000054546 ENSRNOT00000091088 2 1 1 60 X 74871153 74871173 GACATGTACAAGGGATACTGC 59 74871193 74871213 CACTCATCAATCACAAGGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000056323 ENSRNOT00000079576 1 1 1 60 6 145777912 145777931 GAGAACAAGTCTAGCAGAGG 58 145777871 145777889 CCAATCACCAGCTACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060537 ENSRNOT00000079242 2 1 1 60 16 14643959 14643978 TATGTCAACAGGTGGCAGAG 60 14643918 14643938 TTCATCTTCAGAACACCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057600 ENSRNOT00000083602 2 1 1 60 3 4918902 4918920 AGGGTAAAGGAAGTCTCCA 57 4918944 4918962 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU105B ENSRNOG00000055949 ENSRNOT00000086228 2 1 1 60 8 21908210 21908229 ATCTGATGAGAGCTTTGCTG 58 21908251 21908270 CAGGGCGTTTACTTTGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU105B ENSRNOG00000055949 ENSRNOT00000086228 3 1 1 60 8 21908211 21908229 TCTGATGAGAGCTTTGCTG 58 21908253 21908271 TCAGGGCGTTTACTTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060018 ENSRNOT00000054649 3 1 1 60 9 100762553 100762574 TATCTCATCTGATCTCGGAAGC 59 100762592 100762613 GTCTCCCATCCAAATACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067600.1 ENSRNOG00000028330 ENSRNOT00000016874 1 1 1 81 9 53617444 53617472 GCACTCTGAGGAAGATTATATTGAG 59 53617387 53617408 CCAATCCCATATCCAATCTGAG 59 Novel Rattus norvegicus 81 SNORD95 ENSRNOG00000057012 ENSRNOT00000090622 1 1 1 60 10 34152289 34152308 CAGTGATGACCACAACATGC 60 34152331 34152349 CTCAGAAACAGCCTCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067197.1 ENSRNOG00000056666 ENSRNOT00000086407 3 1 1 77 9 34381140 34381160 ATAAATGTGATCGCTTCTCGG 59 34381083 34381107 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058958 ENSRNOT00000091138 2 1 1 60 10 31643321 31643343 CGATACAGAGAAGATTAGAGTGG 58 31643283 31643301 AAGGCTTCATGAATTTGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059161 ENSRNOT00000090686 1 1 1 60 6 114583668 114583687 GAGACTATGTCTGCTCAGTG 58 114583710 114583728 GTTCAGGGACTGTTAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 3 1 1 74 X 57058470 57058488 TAAGACTTGCCATCAACCC 57 57058246 57058432 AACTTCCCACTACACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029172.1 ENSRNOG00000043856 ENSRNOT00000069123 2 1 1 60 10 11310937 11310955 TGTGTCCTGGAACTCACTC 59 11310978 11310997 GAGGTAGGTGGATCTCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057090 ENSRNOT00000078811 3 1 1 61 4 157485708 157485726 GTGTTTCCTTCAGCAGCAC 60 157485749 157485769 GGACCATGCTAATCTTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035064.1 ENSRNOG00000051390 ENSRNOT00000074496 2 1 1 94 12 3783725 3783744 ACCTAAAGAAAGAGATGCCC 57 3783798 3783823 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 AC132671.1 ENSRNOG00000055680 ENSRNOT00000089745 2 1 1 82 8 36720616 36720634 CTGGTACATGTGCAGTGTG 59 36719005 36720570 TGTCTGGACCATAGACGAC 59 Novel Rattus norvegicus 81 AABR07006451.1 ENSRNOG00000029732 ENSRNOT00000050860 3 1 1 60 1 234183526 234183545 AACAACCTCTTCATTGACCT 57 234183566 234183586 CATGGGTAGAGTCATACTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052991 ENSRNOT00000083905 2 1 1 60 3 114557005 114557025 TCCCTTGCTATTGAGATGGAC 60 114556965 114556985 CCACTATCACAAGTCATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061801.1 ENSRNOG00000058067 ENSRNOT00000081967 1 1 1 60 4 144863393 144863413 ACTTAGGTTTCTGGTGAGAGG 59 144863353 144863372 GAGCAGACAATAGGATCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058065 ENSRNOT00000086207 2 1 1 60 4 130156086 130156104 GTTTATGCACAGCGTTCAG 58 130156124 130156146 GAGGCCAGTTAGTAATCATTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060285 ENSRNOT00000080458 2 1 1 60 17 31942740 31942762 GACTTATAGAGTCATTGCAGGTG 59 31942702 31942720 TTCTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016577.1 ENSRNOG00000029052 ENSRNOT00000043218 1 1 1 60 14 104987834 104987852 CATCCGAAACGTCAAAGGC 60 104987876 104987894 TTCTGACTCCAACAGGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054654 ENSRNOT00000083454 1 1 1 61 9 69810269 69810292 GAGAGGCTGTATCTATGTTTAGTG 59 69810306 69810330 GTTAGCCTACTAATCATTCAGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000059737 ENSRNOT00000081467 2 1 1 89 9 75357784 75357803 AGAGAAGGCTAGAGTTCCTC 58 75357714 75357734 CATGAAGACAAAGGCAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069599.1 ENSRNOG00000009373 ENSRNOT00000012585 3 1 1 60 8 33075693 33075711 TGGTTGCAATCTGGATTCG 59 33075734 33075753 ATGAACTCCCAGCCTTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052674 ENSRNOT00000085834 1 1 1 60 4 145319913 145319935 TTGGAACTAGGAGTTGGAATAGG 60 145319954 145319973 CAATACCAGGTCGATTCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000061702 ENSRNOT00000082626 3 1 1 60 4 35850016 35850035 TTCATGTTCATTGTTGCCCT 58 35849975 35849995 CTCGTCTGTTTCCATTTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060441 ENSRNOT00000085071 1 1 1 66 2 198623817 198623835 TTATCCATTGCACTCCGGA 59 198623865 198623883 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042010 ENSRNOT00000063763 1 1 1 60 1 144716478 144716496 AGAAGCTAAGGAGGGTCAG 58 144716436 144716454 AAGACAGTTCCAGGGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052473 ENSRNOT00000080994 3 1 1 60 6 73437214 73437236 GATACAGAGAAGATTAGCATGGC 59 73437256 73437274 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098160.1 ENSRNOG00000055322 ENSRNOT00000086578 1 1 1 80 10 89892734 89892752 CTCAGTGGTCAGGAGACAG 59 89892793 89892817 TTGTGCTGGAATCTATAACCCT 59 Novel Rattus norvegicus 81 AABR07039210.1 ENSRNOG00000057427 ENSRNOT00000079834 3 1 1 75 X 71961310 71961330 TGCTAAGATTCTGGTTCCAG 57 71961365 71961386 TGTCTTCCTTTATGGACTACTG 57 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000052308 ENSRNOT00000081764 3 1 1 60 12 528314 528336 CTGAGTGAAACACAGATTACCAC 60 528276 528298 CACTTGGTGGATTTAGATGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061800 ENSRNOT00000078396 1 1 1 60 1 116748068 116748091 GCTAGAATAAATCTTGTGGGATGG 60 116748031 116748052 GCCTCAGTGTAATCCTATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055463 ENSRNOT00000077310 3 1 1 66 17 16386261 16386279 GACTGCTGTGTCACATGTG 59 16386306 16386327 AGCATGGAACATAGACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118115.1 ENSRNOG00000033655 ENSRNOT00000040903 1 1 1 60 8 22063281 22063303 CACAGTTAACTCAGAAGACAAGG 59 22063323 22063341 ATTGGTCCTGATAGCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054627 ENSRNOT00000080400 3 1 1 60 17 23656304 23656324 AGTTGAGGGTTATACATGTGG 58 23656264 23656283 AGCACTGAGTTTGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052874 ENSRNOT00000089848 2 1 1 60 2 3008176 3008194 ACATGTGCATCAGTAGGTG 58 3008134 3008155 GGTCAGAACACTGAACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041731.1 ENSRNOG00000059257 ENSRNOT00000077890 1 1 1 60 X 137997846 137997865 CAATATCAAGGTGGTGGCAG 59 137997885 137997906 CAACTTCAAGACGAGAAGTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD61 ENSRNOG00000054559 ENSRNOT00000078086 3 1 1 70 X 159889894 159889915 GCTGTGATGAATTTGAATCCAC 59 159889845 159889865 GCTCAGAACTTCTTAGAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058575 ENSRNOT00000081978 2 1 1 60 2 181089729 181089749 CGCGATTATTGCTAATTGGAC 58 181089689 181089710 AGAGATTAGCACAGTTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053027 ENSRNOT00000082930 3 1 1 60 2 213451361 213451379 TAGAGGAGGACCGAATAGC 58 213451319 213451339 CTTTGGGCAAATCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015889.1 ENSRNOG00000059624 ENSRNOT00000090951 3 1 1 81 14 84136950 84136972 CTCATACAGTCTCAACAGATCAC 59 84137012 84137032 GAGCCAATGCTGAATTAGCT 59 Novel Rattus norvegicus 81 AABR07059552.1 ENSRNOG00000049791 ENSRNOT00000071219 2 1 1 60 4 23645214 23645232 ACATACTTGCCAGCATCTG 58 23645257 23645276 CTCACACCAGTCAGAATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 3 1 1 60 X 46934424 46934443 ATGTGATGACTCATCAGAGC 58 46934382 46934401 AGCAGGATACACAGTACTCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055593 ENSRNOT00000084110 3 1 1 61 4 37910232 37910251 TAACTACTGGGTCACATGTG 57 37910274 37910293 GTCAGAGCACTGAGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000058867 ENSRNOT00000081794 3 1 1 60 17 85330165 85330183 GATCTGCCAGGTTTCACCT 60 85330207 85330225 CTTACACAACTCTGGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053627 ENSRNOT00000081299 1 1 1 60 17 43932961 43932979 CATGGGATCTCCAACTGCA 60 43932919 43932937 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058700 ENSRNOT00000080764 3 1 1 87 2 259883624 259883642 TCTCTAGAAGCACTGCAGG 59 259883687 259883711 ACACTGAGTATGGATATAGCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052001 ENSRNOT00000078876 3 1 1 60 X 104683497 104683519 CGATACAGAGAAGATTAGCATGG 59 104683539 104683557 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076830,ENSRNOT00000078786 1 2 4 60 19 17402069 17402087 CATTCTGAGGTTCCTGCTG 58 17402027 17402051 CACCAATAAGAAGAGACTTATCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361864 ENSRNOG00000042588 ENSRNOT00000078890 2 1 1 80 14 22647732 22647751 CATCCTTGCCAAACATTGAG 58 22647791 22652606 CAAAGTCTTCCATTTCCTTAGG 57 Novel Rattus norvegicus 81 LOC367830 ENSRNOG00000042530 ENSRNOT00000017923 3 1 1 127 X 63066397 63109657 GAAGTTCCTGAGGACCCAG 59 63115119 63115137 ACATTCGCCTGAATTGCAG 59 Novel Rattus norvegicus 81 AABR07012377.1 ENSRNOG00000056468 ENSRNOT00000086434 1 1 1 80 2 194510509 194510528 CTGAAGACTAGGGTCATGGA 58 194509687 194510469 AGCATGAAGTATATTCCACTCC 58 Novel Rattus norvegicus 81 AABR07028185.1 ENSRNOG00000042036 ENSRNOT00000066719 3 1 1 60 17 59179942 59179962 ATGGACAGATCATGGAAACAG 58 59179902 59179924 TCATGACTTCTCTTAGTCTGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000080281 2 1 2 81 1 48319814 48319925 CAGCAGTAACAGCAACAGC 60 48320228 48320246 GTTACTGGTGTTGCTGCTG 60 Novel Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 2 1 1 71 16 20108507 20108526 TCATTTACGGAAAGTCAGGG 58 20108450 20108474 CACAGGTTTCTAGTCTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 LOC100910526 ENSRNOG00000040215 ENSRNOT00000081413 2 1 1 80 9 4668153 4668173 AACTGGAGTCAGATTCAGACC 60 4667742 4668113 CCATGTTGTCCCTGATTTAGG 59 Novel Rattus norvegicus 81 Rn60_X_0663.2 ENSRNOG00000051216 ENSRNOT00000076358 1 1 1 60 X 65368515 65368536 AGGGTATGTTCTTGAATACCCT 59 65368551 65368575 CAAGCCAGTATAATAAGCTCTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076321 3 1 3 168 6 104467609 104469437 TTTCCCTTCCACTGGAGTG 59 104475047 104475065 GAATCCTAAAGCCAGCGAG 58 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000070995 1 1 3 80 6 104526263 104526282 AAGACACTGCAGATTCAGAG 58 104526322 104528744 GTGGGATATCATCTGTGTACTC 58 Novel Rattus norvegicus 81 AABR07009397.1 ENSRNOG00000011827 ENSRNOT00000015746 2 1 1 60 2 96032400 96032418 TATTGAGCTGAACGAGCCT 59 96032358 96032379 ACACATCTCCTTAAAGAGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076124 2 1 2 114 4 32336626 32379302 GGATATTGCTGCTGAGAACC 59 32336531 32336549 CTTGAAGTTGGTGTCCAGG 58 Novel Rattus norvegicus 81 AABR07029470.2 ENSRNOG00000058024 ENSRNOT00000082896 1 1 1 60 10 29806972 29806991 CAAGCGAAAGAACCAGAGAC 59 29807012 29807032 GTACTGTTCAATTTCAGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055359 ENSRNOT00000080014 2 1 1 60 2 190324644 190324662 GCAGTCCTTTGTTCATCCT 58 190324685 190324704 TAGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004992.1 ENSRNOG00000052236 ENSRNOT00000086302 1 1 1 139 1 173284395 173284413 ACTCTTCCAAGGACATGGG 59 173284527 173284545 TATCCTGTAGTTGCCCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062599.2 ENSRNOG00000050557 ENSRNOT00000074530 3 1 1 68 4 183933837 183933855 GAGGTCCAACTGTAAGGCA 59 183933787 183933805 ATGGTACCACCCACAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061330 ENSRNOT00000089797 3 1 1 60 4 10104153 10104172 GAAAGGCTATGTCTGCTCAG 59 10104193 10104213 AGTAAGGCTACCAATCATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 2 2 2 86 7 142860724 142861285 GGATGTTAGCACATGACCA 58 142860656 142860674 AATTCCTTCACTGCTGACC 58 Novel Rattus norvegicus 81 AC112348.1 ENSRNOG00000011974 ENSRNOT00000015914 2 1 1 83 8 42389549 42389569 GCTGGTTTGGATTGTCCAG 59 42389484 42389502 AATGTTTCCCACCACTGTG 58 Novel Rattus norvegicus 81 SNORD14 ENSRNOG00000057762 ENSRNOT00000077873 3 1 1 60 1 185329783 185329802 CACTGTGATGATGGTGTTCC 59 185329825 185329843 ACCCAACACAGAATGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000055743 ENSRNOT00000086670 1 1 1 60 10 74765422 74765445 ACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035427.1 ENSRNOG00000047489 ENSRNOT00000074546 1 1 1 64 12 14102123 14102141 TACTGTGTAGACCAGGCTG 58 14102169 14102187 TAGCACTTAGGAGGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063290.1 ENSRNOG00000048177 ENSRNOT00000071311 3 1 1 114 6 27210113 27210134 GTGGCCTTAATGATGAAGGG 59 27210211 27210229 GAGCAGAGATCTATGCACG 58 Novel Rattus norvegicus 81 Rn60_7_1407.3 ENSRNOG00000053143 ENSRNOT00000087227 2 1 1 80 7 142887899 142887919 AGTAGGAACATCGTTTCTTGG 58 142887961 142890215 AGTCCTGGGATATCTGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052342 ENSRNOT00000082488 2 1 1 61 14 32821253 32821275 GGAACGATACAGAGAAGATTAGC 59 32821214 32821233 GCCTCACGAATTTGAGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053299 ENSRNOT00000078406 2 1 1 60 14 65733079 65733099 CTGAGAGTGAACAGTTCACAG 59 65733120 65733139 CAAGACTGCTGCATTATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044977.1 ENSRNOG00000048535 ENSRNOT00000074647 3 1 1 62 20 29280285 29280305 GTAGGGCTGGCTCTTATGG 60 29280241 29280261 GTTGCCTTCACAGGTAATCAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07040494.1 ENSRNOG00000058719 ENSRNOT00000082854 2 1 1 80 X 102509860 102509904 GCTGGATGTATAAGAAGGACAG 59 102509786 102509805 TTTCCATGATGACAAAGGCT 58 Novel Rattus norvegicus 81 AABR07039471.1 ENSRNOG00000047231 ENSRNOT00000075097 2 1 1 113 X 77655027 77655045 ATGCCTGAATGTGAAAGCA 58 77654930 77654953 ATTATCATCTCGTACATCCCAG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000052633 ENSRNOT00000078182 2 1 1 60 17 56593519 56593537 ACAGTTATCTGGCTGTGAC 57 56593477 56593496 CATATCAGCCAAATCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000051585 ENSRNOT00000083071 1 1 1 60 12 30499709 30499727 CCTTGACTCTGTGCTAGAG 57 30499667 30499687 ACACAGTACTCCTTTCAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059774 ENSRNOT00000092077 1 1 1 60 12 6348604 6348623 CCTCTCACCTCAACTAGCTC 59 6348563 6348581 CTTGAAGCTCCAGTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501698 ENSRNOG00000051762 ENSRNOT00000078135 3 1 1 83 10 44506922 44506943 TGTGATCTATTCAATTGCCACC 59 44507468 44507973 CGTAGAAGAGCTTGGTTAACTG 59 Novel Rattus norvegicus 81 SNORA32 ENSRNOG00000061806 ENSRNOT00000077178 1 1 1 63 1 1628184 1628202 TTTGCTGTGGACATGACCA 60 1628139 1628158 GCTAGACAAGGAGCATATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000056852 ENSRNOT00000084105 2 1 1 61 1 116740900 116740921 GACAACAGAAAGTCAAGAACAG 58 116740860 116740880 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035312 ENSRNOT00000053435 3 1 1 60 14 93047336 93047356 CCAAACTCATCTGATCTTGGA 58 93047296 93047318 TTCCTATCCAAGTACTAACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013701.2 ENSRNOG00000058696 ENSRNOT00000080311 2 1 1 60 2 251534573 251534593 TTTGGGTATAGCAGTAGCCTG 60 251534613 251534633 CTTGTGGTTGGATAACAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054482 ENSRNOT00000086166 2 1 1 60 17 17451810 17451828 GATGGCTAAGCAAGTTGCC 60 17451851 17451870 CTCCATTCCAGCAAATTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 2 1 1 78 19 44600184 44601291 GATGATGGAAGACTTTAAGAAGGAC 60 44600130 44600151 GGCTTCTACTTGTTTACTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC096804.1 ENSRNOG00000041549 ENSRNOT00000063302 1 1 1 60 17 80895496 80895517 ACATAAGGACACTGGAAGAAGG 60 80895538 80895556 GTCCCACAAGGCAGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061964.1 ENSRNOG00000057550 ENSRNOT00000090279 3 1 1 60 4 155206293 155206313 AGGTTTCTCTTTGAAGGTCAG 58 155206335 155206353 CCATTCCCAGTTCTTTCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056120 ENSRNOT00000081666 1 1 1 60 2 55499898 55499916 CCCATGTGTCAGTAGGTGG 60 55499856 55499877 CATAGGTCAGAACACTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054283 ENSRNOT00000088451 3 1 1 60 2 259794525 259794546 CTGGTTTGGCTGATTTAGATGG 60 259794564 259794585 TTTATAGAATGCTGAGGGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0711.1 ENSRNOG00000051321 ENSRNOT00000076524 2 1 1 60 X 70222149 70222167 GCAGTAGAAGGAGGCAGAG 60 70222189 70222209 GTCTGTGGGTGTTTGAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000066530 1 1 2 80 X 66516503 66516526 CAGAACTAGAAGCAAGAAGAATCC 60 66516281 66516466 ATCAATCTTTGTACCTTGGGC 59 Novel Rattus norvegicus 81 AC128759.1 ENSRNOG00000016095 ENSRNOT00000021545 3 1 1 83 1 22529362 22529381 TCTTCCTCATTGCAAAGCAG 59 22529451 22529469 CTTTCCTCTCCCTCTTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013065.1 ENSRNOG00000055846 ENSRNOT00000078914 3 1 1 98 2 220833149 220833168 AGGTCTCTATCCATGCACAC 59 220817242 220833088 AAATTCAATGCAGGCCCAG 59 Novel Rattus norvegicus 81 AABR07058899.1 ENSRNOG00000053802 ENSRNOT00000086780 3 1 1 90 7 142062871 142062889 GGTGCAGAACTGGTTTGAC 59 142062945 142062963 ACCTTGAGTGTCCTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 3 1 1 117 2 78283287 78283305 TGATCTGTATGCCAACCCA 59 78283135 78283206 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000051852 ENSRNOT00000089035 3 1 1 67 2 198622171 198622189 TTATCCATTGCACTCCGGA 59 198622122 198622140 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061204 ENSRNOT00000079400 2 1 1 93 14 21558060 21558079 CAATGAGGTTTATCCGAGGG 58 21557986 21558004 TGCTGTGTAAGGTAGGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051718.1 ENSRNOG00000052047 ENSRNOT00000088887 3 1 1 60 3 20050298 20050316 TCCATCCAGGTTTAGTGGC 59 20050256 20050275 CAGGTGACTGATGGTAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051700.1 ENSRNOG00000052969 ENSRNOT00000077990 1 1 1 60 3 19495821 19495841 GGTCTGGGACCTCTTATTCTC 59 19495862 19495881 TAAGTAGCAGCATCTTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053505 ENSRNOT00000079244 3 1 1 60 1 15778210 15778231 GATACAGAGAAGATTAGCTCGG 58 15778251 15778270 GGAATCTTCACGAATTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000061556 ENSRNOT00000086360 3 1 1 63 1 89994494 89994513 CCTGAAGAATGGCTTCTCTG 58 89994450 89994468 CCCACATTTCAATGGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.2 ENSRNOG00000052593 ENSRNOT00000082798 3 1 1 91 17 43632746 43632764 CTCTCAGTCTTCTTGGGCA 59 43632673 43632691 GAACTCAACAAGCTGCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059051 ENSRNOT00000083185 3 1 1 60 1 257475994 257476014 GACTTGGGTTTCTTACAAAGC 58 257476036 257476054 AGCACAGTTTGCTCTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056238 ENSRNOT00000084949 1 1 1 60 1 80155832 80155851 ACTTATCCATTGCACTCCAG 58 80155874 80155892 GGAATTTCCTGCATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000054760 ENSRNOT00000090961 3 1 1 60 1 47702696 47702715 GAAGACCGATCCTCTGTGAG 60 47702655 47702673 GGATTGAAGAGCCTGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0815.11 ENSRNOG00000047520 ENSRNOT00000076466 3 1 1 85 5 77917714 77918082 GTGCTCTACAGTAGAACAAAGG 59 77917650 77917668 TCCCTAGTGATTCCATGCG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000056932 ENSRNOT00000088475 1 1 1 60 1 114186070 114186091 CCCTCAAACAAGTTAAGAAAGG 58 114186031 114186051 GCAACCTTATTGAGTAAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056100 ENSRNOT00000081079 1 1 1 89 2 124592191 124592209 CTTAGAGGCATTGCAGGTG 59 124592120 124592138 ACACTGAGCAGAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052709 ENSRNOT00000088516 1 1 1 60 2 2720455 2720475 GCTGTGTCACATATGTGTCTG 59 2720415 2720438 CACTGAGTATAGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056391 ENSRNOT00000077891 2 1 1 60 2 130414535 130414554 TGCATCAATAGGAGGCAGAG 60 130414576 130414595 TCATGGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040480.1 ENSRNOG00000057407 ENSRNOT00000085348 3 1 1 80 X 102035748 102035768 GAAGAAAGAGAACCCAAACTG 57 102032087 102035706 TCATCATTGGCAGACATGG 58 Novel Rattus norvegicus 81 SNORD101 ENSRNOG00000057952 ENSRNOT00000083652 3 1 1 60 1 22758922 22758942 AGTGATGACTTGTATTGTCGG 58 22758963 22758982 GACTAGCTGAATCTCACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051936 ENSRNOT00000081868 3 1 1 60 2 171006101 171006120 GTAGGAGTTGGAATAGGAGC 57 171006060 171006078 CATTCCTGGAGGTACTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006740.1 ENSRNOG00000058869 ENSRNOT00000079650 1 1 1 60 1 250987767 250987785 CCTTACATGGGAAGGACAG 57 250987805 250987827 GCTAGATAACTTCTCTACAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Miat ENSRNOG00000051028 ENSRNOT00000076905 2 1 1 60 12 50433760 50433778 GAAGCCAAAGGCTTTACCA 58 50433802 50433820 GGTTCGGAAGGTTCAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009221.1 ENSRNOG00000049504 ENSRNOT00000073391 2 1 1 80 2 89259192 89259215 GAGATTTCACCTCACATGCG 59 89259257 89259276 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060012 ENSRNOT00000083352 1 1 1 60 4 100600044 100600062 AAACACCGCCATGTTAAGC 60 100600085 100600104 TGAAGAAGACTTGCTCAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060012 ENSRNOT00000083352 2 1 1 60 4 100599917 100599935 GGAGTTCTGGGCTGTAGTG 60 100599957 100599977 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054261 ENSRNOT00000091871 2 1 1 60 4 17910535 17910556 TGGTCAAGGGTATATGAGTAGC 59 17910577 17910595 GACTCAGAGCTTGTTTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060547 ENSRNOT00000091843 1 1 1 60 14 2163618 2163636 GAGAAGATTAGCATGGCCC 58 2163576 2163594 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061103 ENSRNOT00000089096 3 1 1 61 4 114258267 114258285 GTAGACAAGCTACTGTGCC 58 114258224 114258245 ATGAGTGTAAACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061333.1 ENSRNOG00000052508 ENSRNOT00000079243 3 1 1 61 4 116912805 116912823 AGTTTCTGGGCTGAAGTCC 60 116912845 116912866 AGACTGCAGAAGTTGAATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060694.1 ENSRNOG00000057158 ENSRNOT00000084916 2 1 1 80 4 90049395 90049413 TATTGCGTGATGCAGTTCG 59 90049455 90050133 CACTTGGTCTTCGTCTTAAGC 59 Novel Rattus norvegicus 81 Kdm5d ENSRNOG00000060496 ENSRNOT00000086056 2 1 1 80 Y 573853 573873 AATGTCTTACTGAAGCAGAGG 58 573914 582325 GTGGTGTTTCTAACCTGTCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055997 ENSRNOT00000090854 3 1 1 61 1 94204150 94204168 CAGAAGTTAGCATGGTCCC 58 94204107 94204125 AAACCATGGTACGCTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061866 ENSRNOT00000084887 1 1 1 60 2 260066838 260066856 CACATGGACGTCAGTAGGG 60 260066879 260066898 TAGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061866 ENSRNOT00000084887 2 1 1 60 2 260066838 260066856 CACATGGACGTCAGTAGGG 60 260066880 260066898 TAGGTCAGAACACTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061878 ENSRNOT00000084338 2 1 1 61 2 196541112 196541130 GAGAAGATTAGCATGGCCC 58 196541154 196541173 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014239.1 ENSRNOG00000057207 ENSRNOT00000050446 1 1 1 60 14 5837855 5837874 CTAAGTATCCAGAAGCACCC 58 5837897 5837915 ACGCCACTCATATTGACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060812 ENSRNOT00000090190 3 1 1 61 2 265810692 265810710 GTGCTAAATTCAGCAGCAC 58 265810735 265810753 GGGCCTTGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072671.1 ENSRNOG00000060089 ENSRNOT00000083565 2 1 1 60 2 2694641 2694662 GCTTTACATTAAAGCGAGAGCA 60 2694681 2694701 GTGTATTTGAATATGCAGCCC 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Rn60_9_0429.1 ENSRNOG00000051277 ENSRNOT00000076303 2 1 1 101 9 43139397 43139415 CTACTCTTGCAGCTTGGGA 59 43145293 43145734 AGTCTCCCAAGATGATCCG 59 Novel Rattus norvegicus 81 AABR07036487.1 ENSRNOG00000047830 ENSRNOT00000070891 1 1 1 60 12 44686287 44686305 TCGGAGATAAGCACGATGG 59 44686245 44686265 CCTGCCTTAGACTCCTAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056211 ENSRNOT00000089802 3 1 1 61 3 84387617 84387639 GATACACAGAAGATTAGCATGGC 60 84387658 84387678 GGAATACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106947.1 ENSRNOG00000042648 ENSRNOT00000068335 3 1 1 104 1 168184105 168184125 CTCTTCCTACCATGCTTAAGG 58 168184017 168184036 CAGATGACTCCATAGCTGAG 57 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045263 ENSRNOT00000070530 1 1 1 60 12 26725709 26725729 TAGCACATTTGATCCCATCTG 58 26725751 26725769 CAGTGCTAACCAGGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053637 ENSRNOT00000089785 1 1 1 60 12 12727304 12727324 TAAACCTACCCTGTGTACACC 59 12727345 12727364 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053682 ENSRNOT00000081479 2 1 1 72 14 57833354 57833372 AATAGCTGGTTTCACCAGG 57 57833408 57833426 CTTGAGGGAAATCACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058469 ENSRNOT00000087939 1 1 1 60 5 63701014 63701032 ACATGCATCTACCTCCCTC 59 63701055 63701074 AAGATAGCTCCTCTCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057781 ENSRNOT00000078471 1 1 1 60 12 48724358 48724376 GATTGCCAGGGTTGATTCG 59 48724316 48724334 TGGTGAGGAAAGAAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054755 ENSRNOT00000082765 3 1 1 60 10 50199435 50199455 CTGGAACGATACAGAGAAGAC 58 50199476 50199495 TCACTAATTTGCGTGTCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046938 ENSRNOT00000075492 3 1 1 60 14 91220577 91220598 GCCTAGTTAGCATTTATCAGGG 59 91220616 91220637 ATCTCCCACAGTTTAAGTTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065013.1 ENSRNOG00000050329 ENSRNOT00000073196 1 1 1 60 6 103958529 103958547 ATAGAGGGTCATGTGTCGG 59 103958487 103958505 TTGTTCCCACCAAAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052658 ENSRNOT00000083228 1 1 1 60 14 41255042 41255060 GGTGGCTATGTCACATGAG 58 41255083 41255102 CTGAGCATAGATACAACCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043823.1 ENSRNOG00000032799 ENSRNOT00000051721 2 1 1 67 19 42430543 42430562 AAACTGTTTGTCCGTTGCC 60 42430592 42430611 CATACAAGTGCCTTCTGCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07043601.1 ENSRNOG00000042410 ENSRNOT00000066076 2 1 1 60 19 30668847 30668865 CACAATCATCCGCTTGAGG 59 30668805 30668824 CAAGATTCTGGAGGGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057816 ENSRNOT00000077700 1 1 1 60 14 86881589 86881609 CCATAGAAACTGTGACTGCTG 59 86881549 86881570 GTGACTAAATTCATCCTGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055752 ENSRNOT00000091477 3 1 1 60 14 12686316 12686335 CTCTGTCACATGTGCATCAG 59 12686275 12686296 ACATTGAGCTTAGATGTAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055235 ENSRNOT00000083133 2 1 1 60 1 40672932 40672950 ACTGTGGGAAACTCGACTG 60 40672974 40672992 CAGGAGACAGGGTGAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053702 ENSRNOT00000084319 1 1 1 60 1 282492772 282492794 TACAGAGAAGATTAGCATGACCC 60 282492811 282492832 TGGAAGGCTTCATGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139927.1 ENSRNOG00000052634 ENSRNOT00000087306 3 1 1 80 8 116349079 116349252 GCTGTCTACCTAAGTGTGCT 60 116349018 116349037 GAGCAGAGTCTCCTCTTGTG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000053080 ENSRNOT00000077464 1 1 1 60 6 5646348 5646370 CTAGCACAGAAGATACAAGAACC 59 5646387 5646408 GCAATCAATGAGCTTTAACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054317 ENSRNOT00000091900 1 1 1 60 3 31859232 31859253 TATACAAATAGCTGCACTCACC 58 31859274 31859292 CTGCAATGGACCTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006860.1 ENSRNOG00000053424 ENSRNOT00000086885 1 1 1 60 1 260832287 260832305 GAGATTCCCTCGTAAGGTG 57 260832329 260832347 CCACCAACTTACCACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060169 ENSRNOT00000080034 3 1 1 60 1 59770153 59770174 GATACAGAGGAGATTAGCATGG 58 59770194 59770213 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036163 ENSRNOT00000054286 3 1 1 60 12 9651868 9651886 TGCTCTTGTGAAGCTAAGC 58 9651910 9651928 CCCTAGCATTCTCCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030386.1 ENSRNOG00000047289 ENSRNOT00000071187 1 1 1 60 10 83650417 83650435 GCCTTGAACTCAGAGATCC 58 83650459 83650477 TCTCATGCCTTTGATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000053701 ENSRNOT00000084579 2 1 1 60 12 39663287 39663306 GTAGCAACTTGGAAGAAAGC 57 39663246 39663266 AACAAGTATTCCCTGTTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017238.1 ENSRNOG00000059383 ENSRNOT00000091142 1 1 1 60 15 19109044 19109065 GACAATGATCTCTATGGTTGGG 59 19109005 19109028 CTTCATAAAGTGTATCTGGAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055303 ENSRNOT00000084489 2 1 1 60 3 103099598 103099617 ACATTGTAGATGTGGTTGCT 58 103099639 103099658 CATACTCTCCTTTCTGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051940 ENSRNOT00000083893 3 1 1 63 5 6241058 6241076 ATGAGGTTTATCCAAGGCG 58 6241013 6241032 GACAAAGCATGAGCTTTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056552 ENSRNOT00000080847 1 1 1 60 1 228378576 228378595 TCAGTCCTTCTCTTGTGGTC 59 228378618 228378636 CCAACCAGTCCAGATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061868.1 ENSRNOG00000037266 ENSRNOT00000056335 2 1 1 60 4 150030344 150030363 ATTCTGGAGTACCTCACAGC 59 150030303 150030324 TGAGATCTTTAGAAGCGTTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049760.1 ENSRNOG00000044644 ENSRNOT00000069911 1 1 1 62 5 136425933 136425951 TGTGTTAGTGTGGATGGTG 57 136425977 136425995 TTGTGCTCTGCTTATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056423 ENSRNOT00000083889 3 1 1 68 5 69072371 69072395 CTCCTGTCATTAGAACAATACAGAG 59 69072420 69072439 ATTCATGAATTTGCAGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041857 ENSRNOT00000063610 2 1 1 60 12 45113861 45113880 GCCTCATCTCCTCTGATCTG 60 45113820 45113841 CCCATCTAAGTACTGAACTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009106.2 ENSRNOG00000057159 ENSRNOT00000079449 3 1 1 82 2 87028505 87028523 TGGTGACATTTCTGGAGCA 59 87028565 87038871 GAGTGCTATTCCTGAATGTACAG 59 Novel Rattus norvegicus 81 U12 ENSRNOG00000052392 ENSRNOT00000085863 3 1 1 61 2 28343111 28343129 GATGGCAGAGTCCTCACTG 60 28343150 28343172 CCTTAAGGGACAACCTTTATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053081 ENSRNOT00000081042 1 1 1 164 2 198390327 198390345 CTACCAGAAGTCGACCGAG 59 198390473 198390491 TTGGTGTCCTCGAACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010476.1 ENSRNOG00000057358 ENSRNOT00000083443 3 1 1 80 2 137150774 137150794 TCAAACCTGTACTTGCAAGAC 59 137148852 137150735 TTCTGTTCTTCTGAACGAAAGG 59 Novel Rattus norvegicus 81 AABR07047522.1 ENSRNOG00000056724 ENSRNOT00000091648 2 1 1 60 5 36237295 36237313 TGGCTCATCAGTAAGAGCA 58 36237253 36237274 GTTGCTGGAAATTTAACTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD121A ENSRNOG00000053973 ENSRNOT00000082337 2 1 1 61 5 57552856 57552876 GATGTGATGATTTCCAAGCAC 58 57552815 57552836 GGAAACTCAGCAGTTAAATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041963.1 ENSRNOG00000026379 ENSRNOT00000037031 1 1 1 80 X 144318966 144318987 CAAGACTATTTCTCTGCAGCAC 60 144319028 144319048 GCACCTATGAAAGCTGCTC 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000061635 ENSRNOT00000088200 1 1 1 60 1 110734992 110735011 ATAGCTGTTGGTTTCAAGCA 58 110735032 110735052 GAATAGCCAACAAACTACAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058944 ENSRNOT00000084801 3 1 1 61 3 154849478 154849496 TTGATACTGCAGGGAGAGG 59 154849435 154849453 GATAAGTGTGGGTCCTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNase_MRP ENSRNOG00000057527 ENSRNOT00000090903 2 1 1 62 5 58994930 58994948 CTCTGAAGGCCTGTTTCCT 59 58994886 58994905 CCCTAGGCGAAAGGATAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060515 ENSRNOT00000089367 3 1 1 60 9 66441703 66441723 TGTTTCATGTATATCCCTCCC 57 66441743 66441763 TTGGGTTAAAGGTGTTGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000075913 1 1 2 129 13 84954976 84954994 AATCGACCACAGATGAGGC 60 84937286 84954883 TCCCTTGTTGTCCTTCCTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061887 ENSRNOT00000079428 1 1 1 60 9 17933205 17933223 CGAAGAGGATGACCTTCCC 60 17933247 17933265 TACTCGTACACCCTTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000051900 ENSRNOT00000090075 1 1 1 60 9 82874025 82874047 CAAGTGGCTATTTCTACACTCAG 59 82874065 82874085 GCTACAAACCATTCTTAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105577.1 ENSRNOG00000055867 ENSRNOT00000048694 2 1 1 80 17 77085319 77085342 GAGATTTCACCTCACATGCG 59 77085384 77085403 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000052215 ENSRNOT00000091709 3 1 1 62 6 87098938 87098957 AAAGAGACTCCTTGGTGGTG 60 87098982 87099000 GAACTGCCATCTTCTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064697.1 ENSRNOG00000060044 ENSRNOT00000090975 2 1 1 60 6 90955215 90955235 TGTATTTCCAGAAGTTCCCAG 58 90955175 90955194 TCTTACAACTGAGACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051798 ENSRNOT00000078145 1 1 1 63 7 82496823 82496841 TGAGGCGTGATTATTGCTG 58 82496866 82496886 ACCTACCTGATGTTTAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115371.2 ENSRNOG00000052228 ENSRNOT00000089954 3 1 1 60 15 33479223 33479241 TCTCAACAGTTCGCTTAGG 57 33479264 33479283 TCCCTTGTTATTGTGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058224 ENSRNOT00000085804 3 1 1 60 1 72213439 72213458 AGTGGGCAGATGTATCACTC 59 72213479 72213499 TGAACAAATGGAGTGATCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054921 ENSRNOT00000085121 3 1 1 60 1 21165713 21165732 TGCATCAGTAGGTAGCAGAG 59 21165753 21165773 GATGTTCACAGAACACTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.4 ENSRNOG00000052896 ENSRNOT00000077849 2 1 1 80 15 31469995 31470191 CAGATTTGCTGGGTGAAAGG 60 31470233 31470252 CAGAACAGAACTGGTTCCCT 60 Novel Rattus norvegicus 81 AABR07055682.1 ENSRNOG00000025340 ENSRNOT00000034404 2 1 1 81 7 7840099 7840121 GCAGATAGTGATAGTTTGTGCAG 60 7840039 7840063 GGTCTTGATTATACAGATGGAACG 60 Novel Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 2 1 1 107 9 95346275 95346293 ATCATTTGCACAACCACCC 59 95346361 95346431 CTTTGTTGATTTCCCAGAGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC124874.1 ENSRNOG00000057039 ENSRNOT00000078963 3 1 1 60 13 82126518 82126540 GTACAGAGACAGACAGATAGACC 60 82126480 82126498 GTGTGGGTTCATTTCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000051501 ENSRNOT00000090781 1 1 1 60 14 107604184 107604203 AATACATCACCATCTCTGCC 58 107604223 107604244 TGTTAGAAACCAAGTGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057932 ENSRNOT00000077420 3 1 1 60 14 114778095 114778117 CGATACAGAGAAGATTAGCATGG 59 114778057 114778075 AACGTTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060855 ENSRNOT00000086295 2 1 1 60 5 133028766 133028784 GCACTACCATGCTAGAACC 58 133028803 133028826 CTACTCTACATTCCTACAATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052611.1 ENSRNOG00000055689 ENSRNOT00000086517 3 1 1 82 3 66269055 66269073 TTGATCAGTCTTGGGTGCA 59 66269118 66269139 TAAGGTGTGAAACATTGCGT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058228 ENSRNOT00000083874 2 1 1 60 2 205880361 205880379 CTTTCCTCCCTCACCACTC 59 205880319 205880340 CCTTGCACAATGGATATCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000054827 ENSRNOT00000086749 1 1 1 60 7 109924551 109924569 CGATCTCATCTGATCTCGG 57 109924509 109924529 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 2 1 1 60 2 257462533 257462554 GAACTACCTTATTCTGCACCAG 59 257462575 257462596 GTGATGCTAGTGTCTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC129753.2 ENSRNOG00000055799 ENSRNOT00000090617 3 1 1 60 10 55617759 55617779 GCTTCAGAAGTTCTGTAGTCG 59 55617800 55617819 CCCAATGGATTTCTAGTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068253.1 ENSRNOG00000022614 ENSRNOT00000030314 2 1 1 60 9 93017837 93017856 TCAAATCTACTGAGAGCCGA 58 93017876 93017897 TACTCTTGTTCTTCTTGTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043823.2 ENSRNOG00000043145 ENSRNOT00000067808 1 1 1 121 19 42436473 42436493 AAAGACAGCACTAGTGCAG 58 42436580 42436598 GGAAACCCATAGCAGTTGG 59 Novel Rattus norvegicus 81 AABR07043823.2 ENSRNOG00000043145 ENSRNOT00000067808 3 1 1 128 19 42436473 42436493 AAAGACAGCACTAGTGCAG 58 42436585 42436605 GAGTTATGGAAACCCATAGCA 58 Novel Rattus norvegicus 81 AABR07021530.1 ENSRNOG00000047609 ENSRNOT00000071148 3 1 1 60 13 76855852 76855873 TCCTAGTTTGTCTGATTCAAGC 59 76855813 76855832 GCACAAACAATTACTTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053788 ENSRNOT00000079577 3 1 1 60 20 3022098 3022118 CTGTCTACACATTGATCACCA 58 3022135 3022158 CATCCTTAGAGCTAGTTAGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059105 ENSRNOT00000085302 1 1 1 60 6 51659468 51659486 ATGAGGTTTATCCGAGGCA 59 51659426 51659444 ACATGGATGCAGAAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072283.2 ENSRNOG00000059673 ENSRNOT00000081208 2 1 1 65 12 24744876 24744894 CAAGGAAACATGACCGCTG 60 24744825 24744845 CTGGCTCTTTGTGTTAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052663 ENSRNOT00000086940 2 1 1 65 2 97060877 97060895 ACTAATTTGGAACCCGAGG 57 97060830 97060848 AATTTGCGTGTTCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060068 ENSRNOT00000079594 3 1 1 60 13 107096097 107096118 GCCATATGTGTATCAGTAGGTG 59 107096058 107096076 CAGAACACTGAGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052435 ENSRNOT00000082238 2 1 1 60 20 46568795 46568813 CACAAGTGACTGTGCTTCC 59 46568753 46568771 CCTACAAACGGACCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021355.1 ENSRNOG00000047120 ENSRNOT00000075129 1 1 1 60 13 67427935 67427955 GTGATGAAATCTTCCGGAGAG 59 67427895 67427918 GTCTGTCTTATCTAGCTGTAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000059721 ENSRNOT00000090263 3 1 1 66 4 173331630 173331648 GAACCAGAGTGATTCCCAG 58 173331582 173331600 GTCTGCATCTGTCACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014983.3 ENSRNOG00000052897 ENSRNOT00000081849 1 1 1 148 14 42717913 42717932 TCTCATATTTCACAGCGCTC 58 42718043 42718066 TGTCGGGTATTTATTTCTCTGC 59 Novel Rattus norvegicus 81 AABR07061902.1 ENSRNOG00000000021 ENSRNOT00000000022 2 1 1 76 4 151987132 151987152 TACTTGGACGTCCGAAAGG 59 151987192 151987210 CACACTGACTTGTGGTAGG 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000059024 ENSRNOT00000084288 2 1 1 81 3 122612678 122612696 AAATGAGTCTCTGCAGGTG 58 122612741 122612759 TGAGCTTAGGCACAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000059616 ENSRNOT00000090027 2 1 1 61 3 76575119 76575137 ATGTAAGAGACCCTTGGGC 59 76575076 76575095 CATGAAGTAGGTGGCAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000047655 ENSRNOT00000071216 1 1 1 94 3 18805261 18805436 TTTCACACTATTCACAGTGTCC 59 18805491 18805509 AGGTGATGGTGACCTTCTC 59 Novel Rattus norvegicus 81 AABR07021527.1 ENSRNOG00000061773 ENSRNOT00000090371 1 1 1 66 13 76595610 76595630 GGGCTGTTGATACAATTTCTC 57 76595656 76595676 AGTAGGATATTGACGATGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054530 ENSRNOT00000089976 1 1 1 60 4 118589216 118589234 CTGTTGGTTTCAAGCAGGT 59 118589258 118589276 TCTGAAATGGCCAACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051508 ENSRNOT00000078401 2 1 1 60 5 41320719 41320740 GATACAGAGAAGATTAGCCTGG 58 41320761 41320779 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051524 ENSRNOT00000081608 2 1 1 60 5 165257909 165257928 AAAGGAGTTCAAAGGCTGAG 58 165257868 165257886 GAAATCACAGGGATCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048280.1 ENSRNOG00000017640 ENSRNOT00000023713 1 1 1 60 5 70749641 70749660 GAACTTTGGCTCATTTCCGA 59 70749600 70749619 AGTCCATTCACATCTTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059832 ENSRNOT00000082131 2 1 1 60 5 74842244 74842263 GGAATGAGGCAAAGATTAGC 57 74842286 74842304 ACATTTCATGAATCCGCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000053634 ENSRNOT00000088281 1 1 1 60 13 77065435 77065457 GATCCTACATAAACATGGAGGTC 59 77065477 77065495 AACGATCAGACTTAGCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.4 ENSRNOG00000058237 ENSRNOT00000084501 3 1 1 80 15 29841112 29841349 CAATTAAATTGGGTGAGCAGC 59 29841052 29841071 AGAAGCTATGGATCCCTCTG 58 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000058284 ENSRNOT00000081726 3 1 1 60 10 111019056 111019078 CCTATAAGGATAGATGAGTGGCA 59 111019018 111019036 CACTCACTGGACCAAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053385 ENSRNOT00000089764 2 1 1 61 13 66603958 66603981 CTATGTCACATGTAGGTAGTAGAG 58 66603920 66603938 TCATCAGGTGTTCAGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.2 ENSRNOG00000056727 ENSRNOT00000088206 1 1 1 60 7 67116746 67116764 CTCAGGATGAGGTGGAGTG 59 67116704 67116722 TCCTTGAGGATGAGGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056766 ENSRNOT00000077540 2 1 1 60 15 94701940 94701960 ATTGCAGCTGCTTTATCTGTG 60 94701900 94701920 AACATAGACACAACTGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044555.1 ENSRNOG00000041610 ENSRNOT00000063363 3 1 1 61 20 10530691 10530709 TTTCTCCTGTTTGCCTCGA 59 10530734 10530752 AGCTGTGAATGGAAGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004894.1 ENSRNOG00000028974 ENSRNOT00000047494 1 1 1 89 1 166282438 166282457 CTAAGAGACCACCTGTCCTC 59 166282364 166282386 CATCATGGGCAATCACCAG 59 Novel Rattus norvegicus 81 LOC499229 ENSRNOG00000045560 ENSRNOT00000073421 2 1 1 60 1 173255289 173255309 CTACAGTCACAAGAATCAGCA 58 173255328 173255349 TCTAATGAAGGACACGATAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060209 ENSRNOT00000090567 3 1 1 60 13 16320239 16320258 TATGAGTAGCTGTGCTTCCC 59 16320279 16320299 TCCTACAATGGACCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058689 ENSRNOT00000088633 2 1 1 60 3 4092863 4092881 AGTGGCTATTTCTACGCTC 57 4092821 4092842 AGGCTACAAACCATTCTTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059873 ENSRNOT00000084428 1 1 1 60 19 21459616 21459637 AGCAGTACAGACAAGATTAGCA 60 21459577 21459595 CACTTCACAAATGTGCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059658 ENSRNOT00000087335 2 1 1 60 20 23530613 23530637 GTTGTATCACGAGTACATCAATAGG 60 23530577 23530598 CACTGAGTGTAGACATAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058889 ENSRNOT00000081541 2 1 1 60 1 251058169 251058187 TGATCAAACGGGAAAGGTC 58 251058127 251058147 TTCAAATAACTCCAGACCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043978 ENSRNOT00000069245 1 1 1 60 18 32756130 32756149 TCTTGTCTGATCTCAGAAGC 57 32756089 32756108 GTTGTGGGAATACTGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010085.1 ENSRNOG00000054039 ENSRNOT00000086831 3 1 1 94 2 122690589 122690607 AAGCCTCTTGTTCCCTGTC 60 122690663 122694245 CAGGACAATCTACTTTGAGACAC 59 Novel Rattus norvegicus 81 AABR07018010.1 ENSRNOG00000061809 ENSRNOT00000075218 2 1 1 175 15 36196173 36196192 AACTTGCAGCCTCTAATACC 58 36196014 36196035 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052571 ENSRNOT00000087974 2 1 1 60 X 81921168 81921188 ACGATACAGAGATTAGCATGG 58 81921209 81921228 GAAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057067 ENSRNOT00000081232 3 1 1 62 5 156191671 156191690 TCTGAGACGCGATTATTGCT 60 156191715 156191733 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000053555 ENSRNOT00000090324 3 1 1 64 20 10281921 10281939 CTGAGTTCAGTTCAGGGCA 60 10281966 10281985 CAGCCAATTTCAATGTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052065 ENSRNOT00000086444 3 1 1 64 13 91465854 91465872 ATTGCTGCTGTGTCATGTG 59 91465808 91465829 ACAATGAATGAGACATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060013 ENSRNOT00000078147 2 1 1 60 19 31615890 31615910 TGGCTCATTGCAAGATTTGTC 60 31615850 31615870 CTCCTCTAGTCTGACCAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001048.1 ENSRNOG00000049434 ENSRNOT00000073791 2 1 1 80 1 35526903 35526924 TGTTGGTGGAATGAACTGGT 60 35526966 35526985 CTCAGGTAGTGCAATGTCCA 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000056929 ENSRNOT00000083179 3 1 1 60 15 33489595 33489617 GATACAGAGAAGATTAGCATGGC 59 33489557 33489575 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000059035 ENSRNOT00000081696 1 1 1 60 18 49568723 49568744 TTATATCAATCAGTGGCAGAGC 58 49568765 49568783 GCTAGGCATCAAGCTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.7 ENSRNOG00000051183 ENSRNOT00000076632 3 1 1 60 X 73564190 73564211 ATGAACTATCTGATGATGCCTG 58 73564229 73564250 ATGTTGCACTAATCTCTTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059077 ENSRNOT00000083530 2 1 1 60 7 137917811 137917829 ATCTTTGGTGTGCAATGGT 58 137917769 137917791 GACAATAGGCTACATACACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060679 ENSRNOT00000081591 3 1 1 60 18 60285910 60285930 AAGGAGACAGAACAAGTTAGC 58 60285870 60285890 CACTTCACAGATTGTCATGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051895 ENSRNOT00000079952 2 1 1 60 X 135846448 135846467 TTTGGTCCAGGGTATACGAG 59 135846490 135846508 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054981 ENSRNOT00000081481 3 1 1 60 19 35661429 35661449 GTTGCATATGCATCAGTAGGT 59 35661466 35661489 CAGAACATTGAGTGTAGACATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058886.1 ENSRNOG00000055307 ENSRNOT00000083250 3 1 1 85 7 141672689 141672707 CCATCAAGGGCAAACACTG 59 141672753 141675264 CTTAACTTTCGAGGTTCCTGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054720 ENSRNOT00000078621 2 1 1 60 19 34524173 34524194 CATGTATTGGTACTTGGCAGAG 59 34524215 34524233 TGTCCACAGGTCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060058 ENSRNOT00000077716 1 1 1 60 3 74347741 74347763 GGAGTGATACAGAGAAGATTAGC 58 74347783 74347801 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058155 ENSRNOT00000083775 3 1 1 75 19 21125926 21125944 ATTGTAGGTATGGCTGCTG 57 21125978 21126001 CACTGAGTGTAGATATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060510 ENSRNOT00000083721 2 1 1 60 5 127646219 127646240 GGAACGATACAGAGATGTTAGC 59 127646180 127646198 GCTTCACAAATGTGACCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059353 ENSRNOT00000089187 3 1 1 60 18 33982407 33982426 TTGCATGTAAGACTTGCCAG 59 33982366 33982384 ATCCAGATCACCCAAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551497 ENSRNOG00000057156 ENSRNOT00000085882 2 1 1 60 11 29069347 29069368 GCTATGGTAGCTATGGTTATGG 58 29069387 29069407 CAGGACCAGTACCTTCTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056661 ENSRNOT00000082206 2 1 1 60 3 20347721 20347742 CAATTCAGAGAATTAGCATGGC 58 20347682 20347702 GGAATGCTTCATGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052683 ENSRNOT00000089956 1 1 1 60 15 33968002 33968020 GAGAAGATTAGCATGGCCC 58 33968044 33968062 AATATGGAGCGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044937 ENSRNOT00000070204 2 1 1 60 18 27292894 27292913 CAGATCGCATCCAATCTCAG 59 27292933 27292954 AGCAGTCTCTAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059631 ENSRNOT00000090635 3 1 1 60 4 112572683 112572703 TGTCACATGTCCATCAGTAGG 60 112572724 112572743 TCAGAGCACTGAGCTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055352 ENSRNOT00000088058 2 1 1 67 18 47273213 47273231 CTTATCCATTGCACTCCGG 58 47273164 47273182 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036972.1 ENSRNOG00000045894 ENSRNOT00000071538 3 1 1 80 X 8471553 8471571 CAGCTGTAAGGCATTTCCT 58 8471491 8471509 AAGACTACCAGCCTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055002 ENSRNOT00000079353 1 1 1 60 4 70860627 70860647 ATACAGAGATGATTAGCACGG 58 70860667 70860687 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055002 ENSRNOT00000079353 2 1 1 60 4 70860626 70860647 AATACAGAGATGATTAGCACGG 58 70860665 70860686 GAACACTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.2 ENSRNOG00000055182 ENSRNOT00000083977 1 1 1 60 3 150303153 150303172 AGGACACCAAATCTGTCGAG 60 150303112 150303131 CAGCAAACCTCCAACTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057445 ENSRNOT00000090205 2 1 1 60 X 116177113 116177132 GAAGCAACAAGGAGAAAGGG 59 116177151 116177173 CATTCAGATGTTCATAGGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054945.1 ENSRNOG00000060485 ENSRNOT00000083781 2 1 1 60 3 174466500 174466519 AAGAATCCAATCGCTTCTCG 59 174466539 174466560 ATCTCACACTTGGATTCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052788 ENSRNOT00000079768 2 1 1 62 1 2886324 2886342 CAAGTTCAGTTCAGGGCAG 59 2886280 2886299 AGTCACTTTCAATGTCCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065676.1 ENSRNOG00000056495 ENSRNOT00000084131 2 1 1 104 6 139177236 139177339 TTTCAAAGCTGTCTCCTGTC 58 139177406 139177424 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060360 ENSRNOT00000084923 3 1 1 61 18 31444767 31444790 GAGATGATACAGAGATTAGCAAGG 59 31444809 31444828 GAACGATTCAGGAATTTGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052071.1 ENSRNOG00000050109 ENSRNOT00000074833 3 1 1 64 3 35019894 35019914 TCAATTAGTGATCAAGGTGGG 58 35019940 35019958 CAAGACTATCAGCCCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060834 ENSRNOT00000092219 1 1 1 60 18 16703863 16703884 AAGCCACACTTTAGTTGAAGAC 59 16703903 16703923 GCTTAGGAACAAACAGTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052720 ENSRNOT00000085992 1 1 1 60 X 158258547 158258569 GAACGATACAGAGATTAGCATGG 59 158258509 158258527 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.1 ENSRNOG00000048337 ENSRNOT00000071413 1 1 1 81 1 222483988 222484007 CAGTAAGAGGAAGAGGAGGA 58 222483923 222483941 CTACCTCTTGGAGGTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060856 ENSRNOT00000088961 3 1 1 60 X 103063861 103063884 CATTGATAGGTATCAGAGAAGAGG 58 103063824 103063845 GTTCATGTATCAGCACATTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053666 ENSRNOT00000077120 1 1 1 60 18 16511490 16511508 GAGAAGATTAGCATGGCCC 58 16511532 16511550 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061451 ENSRNOT00000088820 2 1 1 60 X 80236779 80236801 GTCAGATGTAATCTAGCTAGCAC 59 80236741 80236761 AAGAGTGATGAAGGACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058045 ENSRNOT00000077281 3 1 1 60 4 141216969 141216988 ACAACCTTCACGGAATAGAG 57 141217009 141217029 AGCACAGCTACTCGTATATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.1 ENSRNOG00000051662 ENSRNOT00000073098 1 1 1 98 X 133954863 133954881 ATGGCAACCAACAGATTGG 59 133954781 133954802 TCCCTGTGGTCTAACTTGAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052835 ENSRNOT00000082843 2 1 1 60 X 108892496 108892514 TGGTTCACTGATCTGGCTG 60 108892454 108892473 ATGCTAAGGAGCAGTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053761 ENSRNOT00000081960 3 1 1 61 6 133834490 133834508 ATTGATGATGGCCACTCGT 60 133834532 133834551 TGGACCTCAGAGACTTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056567 ENSRNOT00000078132 1 1 1 60 1 197930671 197930690 TTACCAAGCCAAATGCATCC 59 197930630 197930652 GGAAGATTAGCCACTATCAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000054762 ENSRNOT00000078371 2 1 1 60 X 154716682 154716700 GCTCTTAAGGGCACAACTG 59 154716724 154716742 GCACTTTGGAGTGACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115418.1 ENSRNOG00000043746 ENSRNOT00000069013 2 1 1 60 15 4295143 4295164 TAGGCTTTGAGATTTCAGAAGC 59 4295185 4295203 AGGCAGCAGGAAGAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059899 ENSRNOT00000080326 3 1 1 60 10 94963792 94963812 AGAAACAAGCTTCTGTGACTG 59 94963828 94963852 CTACGTGAGTACTAGGATTAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 1 1 1 76 1 234836119 234836140 ATCATTGACTCAACTGTCGA 57 234836062 234836081 ATTGAGTCCTGGATTTCCTG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA31 ENSRNOG00000055553 ENSRNOT00000080370 3 1 1 60 15 57894101 57894119 TGCATCCACTGATAGACCT 58 57894143 57894161 TGCATCCTAGTGCAAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061398 ENSRNOT00000088731 1 1 1 60 15 24789362 24789383 GATACCATGATCATGAAGGTGG 59 24789404 24789422 ACATCCAGAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061598 ENSRNOT00000091102 1 1 1 60 20 11618293 11618314 CTGAAATTGGAACGATACAGAG 57 11618335 11618353 TGAATTTGCGTGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061598 ENSRNOT00000091102 2 1 1 60 20 11618300 11618320 TGGAACGATACAGAGATTTGC 59 11618342 11618360 CGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035243 ENSRNOT00000053366 1 1 1 60 11 83746280 83746300 ATCTCGTCTGATATCGGAAGC 60 83746318 83746340 ATTCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053858 ENSRNOT00000091478 2 1 1 60 20 29693435 29693453 AGTGGCAGATGTATCCCTC 59 29693393 29693412 CTGAACAAAGTGAGTGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000052300 ENSRNOT00000080046 2 1 1 61 1 101117504 101117522 GGTCTTCAGATGTCCTCCA 58 101117461 101117479 TTTATGGCATCAGCTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058279 ENSRNOT00000087523 2 1 1 60 4 85177764 85177784 GTGACATAAATGTCAGTGGGT 58 85177804 85177824 ATCAGAACACTGAGCATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.2 ENSRNOG00000056126 ENSRNOT00000081820 3 1 1 85 5 58218021 58218043 GCAAAGGGTATCATAATGCCA 59 58217956 58217975 TGGACTTGTTCACATTTGGT 58 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000058366 ENSRNOT00000083178 3 1 1 61 19 2456838 2456856 AGAGACTTTGACAGCCCAG 59 2456879 2456899 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0720.1 ENSRNOG00000051130 ENSRNOT00000076668 3 1 1 147 X 71127772 71141623 TGATGAAGAACTCTTCTTCAGC 59 71141730 71141749 CATCCATCCAGTCATTGGAG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000060170 ENSRNOT00000078238 1 1 1 60 7 74943578 74943596 CTCTCCATTCCAGATGTGC 58 74943620 74943638 ACGCAGTTTAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060170 ENSRNOT00000078238 3 1 1 60 7 74943579 74943597 TCTCCATTCCAGATGTGCT 58 74943620 74943639 TACGCAGTTTAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056311 ENSRNOT00000087900 1 1 1 60 19 56580590 56580612 GCCAGAAGGTTGTGAATTATCTC 60 56580552 56580572 GAAACAGAAGTCCAACCTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057192 ENSRNOT00000089656 3 1 1 60 18 81672036 81672056 ATGTGTCTATCTCCTTCCTCC 59 81672077 81672096 CCAGCATGAAGATTAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053645 ENSRNOT00000088434 1 1 1 71 19 27479270 27479288 TCAATTTAGCAGCACACGA 58 27479217 27479235 ATTGCTTGTCACTGTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000054529 ENSRNOT00000079897 2 1 1 60 9 94900126 94900144 AACCCATGATGCAGGAGTC 60 94900168 94900186 ACTTGAGATCATGCACGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115473.1 ENSRNOG00000060981 ENSRNOT00000088844 1 1 1 60 4 115218299 115218319 GTCAGCTGGAATTCATGAGAC 59 115218259 115218277 GCGGATGTCAATGTCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.1 ENSRNOG00000046131 ENSRNOT00000074084 1 1 1 60 11 36576775 36576793 TGAACCTCAGAGATCCACC 58 36576817 36576835 GTGGTGCTTGCCTTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125384.1 ENSRNOG00000059405 ENSRNOT00000078068 3 1 1 68 11 68687469 68687487 AAAGGCAATTGCTTCTCGG 59 68687419 68687437 CCACCATGAGTGATTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051577 ENSRNOT00000089012 2 1 1 60 5 109013259 109013281 GGAACGATACAGAGAAGATTAGC 59 109013221 109013239 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055195 ENSRNOT00000089711 1 1 1 60 19 21892775 21892793 ATAGAGGAGAGGCTGTGTC 58 21892733 21892753 TTCTACTCATTCAGATGTCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060698 ENSRNOT00000085827 2 1 1 60 3 61415752 61415770 TCAGGAAGGTGGTTTACCC 59 61415710 61415728 AGAAGTCAGCACATCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056169 ENSRNOT00000078553 1 1 1 60 11 86786601 86786619 TACTTATCTGGCGGAGGAG 58 86786559 86786577 ACCTTACCCTTGGGAAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034324.1 ENSRNOG00000050506 ENSRNOT00000075798 2 1 1 60 11 65309282 65309300 GCCTTGAACTCAGAGATCC 58 65309240 65309259 CCACATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064011.1 ENSRNOG00000047769 ENSRNOT00000071847 2 1 1 141 6 60151456 60151474 ACGCCTTAAGTAGCCAGAC 60 60151580 60151598 ACTGAAGCTCTGGGAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051703 ENSRNOT00000077383 1 1 1 60 9 17173731 17173749 CTTGAGTCCAGGAGTTCTG 57 17173689 17173707 GAACTTAGTGCGAACACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058201 ENSRNOT00000091590 2 1 1 63 7 122824372 122824393 CTGCACATACACTAAGATTGGA 58 122824416 122824435 GTGTCAATCCTTAAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034425.1 ENSRNOG00000051745 ENSRNOT00000079347 2 1 1 61 11 71078315 71078333 TAGCTGTCCTGGAACTCAC 59 71078358 71078376 GCAGGTGGATCTCTGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015674.1 ENSRNOG00000059284 ENSRNOT00000084502 1 1 1 88 14 69510056 69510074 CGGTCGAGATCAAGAAAGG 58 69509980 69510002 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AC139605.1 ENSRNOG00000060996 ENSRNOT00000091556 1 1 1 149 7 117644265 117644283 CTCCCTAAAGGCACTGGAG 60 117644133 117644151 GATTCTGCTTTCCGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056253 ENSRNOT00000091771 2 1 1 70 5 164164228 164164246 GCTCCAGTAGCACATATCC 58 164164280 164164298 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057288 ENSRNOT00000080839 3 1 1 61 9 81007291 81007310 AGAAACACCTTGTTGATGGT 58 81007249 81007267 AGGACTGCCATCTGTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063893.1 ENSRNOG00000058209 ENSRNOT00000091972 3 1 1 80 6 54443255 54443278 AGATTTCACCTCACATGCGA 60 54443319 54443339 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000059569 ENSRNOT00000081585 1 1 1 71 6 79174001 79174021 GCAAGCCATCTGGTATAACAC 60 79173950 79173970 GGCAAAGGAAACAAGTATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000051445 ENSRNOT00000079946 3 1 1 60 4 33946854 33946873 AGCCTGGTACAGCATATGTC 60 33946895 33946914 ACCAAGACCAGCAGATTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052936 ENSRNOT00000084898 3 1 1 68 11 19816812 19816830 CAGGACAGGTACAGCAGAG 60 19816862 19816880 GTTGAGGCATATGGACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000079489 1 1 2 80 17 14943492 14943512 ATGTACGAAGAAAGGAACAGG 58 14942044 14943450 TCCTGGGTATGCTTATGCT 58 Novel Rattus norvegicus 81 AABR07046699.1 ENSRNOG00000049217 ENSRNOT00000051988 2 1 1 114 5 2177268 2177288 TTGGACCAGAGAAACACCT 59 2177172 2177196 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051910 ENSRNOT00000088797 3 1 1 60 9 49661582 49661602 TGTGTCACATATGAGTCAGAG 57 49661542 49661566 ACACTTAGTATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060409 ENSRNOT00000085299 2 1 1 60 9 14262706 14262724 GACCCGTGAGTATCTGGAG 59 14262745 14262766 CATACTTCAGAACTTGACTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061617 ENSRNOT00000085685 3 1 1 62 4 86847299 86847322 GAGGCTATGTCTAAATGTTCAGTG 60 86847260 86847281 TGTTGGGCTACTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056147 ENSRNOT00000080804 1 1 1 60 7 80491012 80491030 GAGAAGATTAGCATGGCCC 58 80490970 80490988 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055482.1 ENSRNOG00000048108 ENSRNOT00000072656 1 1 1 80 7 4048013 4048081 CACCTGTTCTTACATCAACCC 59 4048120 4048141 GCAATTGATGTCATCAGAACTG 58 Novel Rattus norvegicus 81 AABR07008805.1 ENSRNOG00000046150 ENSRNOT00000071652 2 1 1 60 2 74714061 74714079 CGTCCCTCAGTATACCTGC 59 74714101 74714121 TTTCTGTCATGGTGATCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052504 ENSRNOT00000078492 2 1 1 60 7 50726344 50726362 TAAACGCATGCTTCATCCA 58 50726302 50726320 GACCAGAGATTGGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061413 ENSRNOT00000084653 2 1 1 60 4 160416292 160416311 AGATCTGAGTTCTCTTGCCA 59 160416329 160416352 CAGTAGTCAAGCATTTACCTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064102.1 ENSRNOG00000024969 ENSRNOT00000039776 2 1 1 60 6 64649467 64649489 GAGGAGGAAATACTAGACATTGG 58 64649508 64649527 AACTCTCATGTCTTCTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055047 ENSRNOT00000085051 2 1 1 60 9 31651485 31651506 TGATGTAGAGATTAGCTTGGTC 58 31651526 31651545 TGGAGCACATCTCAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049379 ENSRNOT00000073838 2 1 1 76 11 5785880 5785898 TCTTACTGTGTTACGCCCT 58 5785822 5785840 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064386.1 ENSRNOG00000058950 ENSRNOT00000078189 3 1 1 60 6 78586301 78586321 AAGGCCCACTATACTAACAGC 60 78586261 78586280 CAATTTCAGGTGCAATTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033859.1 ENSRNOG00000036332 ENSRNOT00000054454 3 1 1 60 11 40945161 40945181 AACATGCCTTAGGTATCACTG 58 40945201 40945221 AGTCATGCTTGAGAATGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.1 ENSRNOG00000018537 ENSRNOT00000024998 3 1 1 67 1 167685251 167685271 TGTGGTCTTGAGAAGTTTCTG 58 167685301 167685319 CATTGCTGTGGCAGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013654.1 ENSRNOG00000061151 ENSRNOT00000072763 3 1 1 78 2 248579796 248579815 ATCCCTGAAAGAATTCCAGG 57 248579856 248579876 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064711.1 ENSRNOG00000046064 ENSRNOT00000071048 1 1 1 60 6 91332194 91332215 CTCTTTGGTTATTTCCTGAGTG 57 91332234 91332254 CGAATTTGTCTATTGTGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034316 ENSRNOT00000052439 3 1 1 60 7 71289690 71289708 GATCTCGGAAGCTAAGCAG 58 71289648 71289666 GTATTCCCAGGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068179.1 ENSRNOG00000046217 ENSRNOT00000072563 1 1 1 60 9 87667052 87667070 AAAGGGAGACAGGAGTGTC 59 87667092 87667112 GTCACCAAGTAAAGGCTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055864.1 ENSRNOG00000046641 ENSRNOT00000074602 3 1 1 60 7 14155207 14155225 GCCTTGAACTCAGAGATCC 58 14155165 14155184 GCTCATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056857 ENSRNOT00000078728 1 1 1 60 7 116793261 116793279 GTGTCAGTAGGTGGCAGAG 60 116793303 116793321 GTCAGAGGTCAGAACCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054407 ENSRNOT00000085960 3 1 1 63 7 6637741 6637762 GTGTCACATGTAAATGACAGAG 58 6637783 6637804 TGTTCATAGATCAGACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108351.2 ENSRNOG00000060783 ENSRNOT00000090244 1 1 1 66 7 143492764 143492782 CATACTGGGCCTTGACCTC 60 143492812 143492830 CTGTCCATGGACAACAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059891.1 ENSRNOG00000060069 ENSRNOT00000089205 3 1 1 60 4 40419717 40419735 TGTTACAGGCATCTGTGCT 59 40419673 40419694 AGTCATATCTGTCCATTTCGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010705.1 ENSRNOG00000032715 ENSRNOT00000046641 3 1 1 60 2 148262452 148262470 ACCTGAAGCAACAGAACCT 59 148262493 148262512 CGCTACACTGGTAGAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.1 ENSRNOG00000036339 ENSRNOT00000054460 1 1 1 64 17 44708739 44708757 GTGCATGGAGTTGAATGGA 58 44708693 44708711 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU85 ENSRNOG00000060559 ENSRNOT00000084000 2 1 1 60 4 157700871 157700891 TTCAGTTGGTTTGGCTAAGTC 59 157700831 157700850 ACCACCAAGATTACAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061083 ENSRNOT00000077425 2 1 1 60 10 89558409 89558427 AGTTGGAATAGGAGCTTGC 58 89558451 89558469 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054659 ENSRNOT00000078118 2 1 1 60 4 9892054 9892074 TTGTTCTTACATCAGTCAGGG 58 9892095 9892114 CAAGCTAGGATGAGCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052729.1 ENSRNOG00000058982 ENSRNOT00000078440 2 1 1 80 3 71012448 71012769 AGAAGGAAGAAATGAGCAGAG 58 71012388 71012407 TACAAATCAGCGTGTAACCA 58 Novel Rattus norvegicus 81 AABR07027754.1 ENSRNOG00000053374 ENSRNOT00000078962 1 1 1 64 17 43835442 43835461 TGGACTTGAAATCCATTGGG 58 43835397 43835415 AACATAAGCACGTAGTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054564 ENSRNOT00000084102 1 1 1 60 4 101074716 101074734 ATTCTGCTCCTATGCACCC 60 101074674 101074692 CTGTCTCCTCAGTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056796 ENSRNOT00000077258 1 1 1 60 7 99482924 99482944 CTAGCTGCGAGAATTAATGTG 57 99482966 99482984 AGTGCGTTCATAGTGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000051992 ENSRNOT00000080582 1 1 1 60 9 11141334 11141356 TGTGGTGTTCCTATATCAGTCAG 60 11141296 11141316 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554192 ENSRNOG00000056102 ENSRNOT00000081255 2 1 1 60 10 87913508 87913529 GAAATACTATCCATTTGCCCAG 57 87913469 87913488 TGATGTGTAACCAATTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 3 1 1 87 7 13055385 13055406 TTTCTTTGGAGGCTCCTCAG 60 13055454 13055474 CCACTCCAAATTGTAAACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072758.1 ENSRNOG00000011472 ENSRNOT00000015252 3 1 1 60 2 190114412 190114431 CAAAGATCAGGAAAGCCCAG 59 190114371 190114391 GTAACCAGTTTCTTCCTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD86 ENSRNOG00000061010 ENSRNOT00000085750 1 1 1 60 4 10161535 10161556 CTCCCTAACTTACATAGGCCTC 60 10161577 10161595 AGCATCCAGACACCATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000059318 ENSRNOT00000085365 3 1 1 106 8 22715602 22715620 ATCCACAGAGCAGACACTG 59 22715690 22715708 CTTTAGAGGTGGCTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058930.1 ENSRNOG00000056692 ENSRNOT00000079014 1 1 1 84 7 144368212 144368230 TCATGACACCTTCATGCCT 59 144368142 144368164 CAAGGTTGTACTGCTGCAG 59 Novel Rattus norvegicus 81 AABR07067233.1 ENSRNOG00000059387 ENSRNOT00000081277 3 1 1 80 9 35925609 35925632 AGATTTCACCTCACATGCGA 60 35925673 35925693 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07058406.1 ENSRNOG00000059955 ENSRNOT00000078097 3 1 1 60 7 114690417 114690437 CACTCAAGTTCATCAAGAGGA 58 114690377 114690395 TCCTCCCACTTTCTCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002068.1 ENSRNOG00000045583 ENSRNOT00000075269 1 1 1 80 1 65830764 65830782 TGTTGGCATCCTCTACCTG 59 65824302 65827045 TCCCACCTGATTGTATTTACCT 59 Novel Rattus norvegicus 81 Rn60_10_0876.3 ENSRNOG00000061784 ENSRNOT00000065487 2 1 1 60 10 87731187 87731205 CTCCTCAGAGCAGACAGAG 59 87731229 87731247 CAGAACCTCCACCTCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037436.1 ENSRNOG00000052565 ENSRNOT00000083810 3 1 1 60 X 20734042 20734063 AGACCTCAGTAACTTGACACTC 60 20734003 20734021 GGTGTCTTGCACAAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057333.1 ENSRNOG00000061578 ENSRNOT00000058504 3 1 1 80 7 65800164 65800187 CATCTGGAATAACAAACCCAGG 59 65800226 65800246 AGTTCAGGGATAGTGATTCCC 59 Novel Rattus norvegicus 81 AABR07071746.1 ENSRNOG00000018786 ENSRNOT00000025383 3 1 1 83 8 128943723 128943743 GGCCAGAGTAAACATTAACAC 57 128943659 128943679 TCCACCACAGATTTCATGTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059684 ENSRNOT00000091118 2 1 1 60 13 22242726 22242746 TGGGTAGCAGAAAGGAAAGAG 60 22242686 22242704 TCAGGTGTTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057460.1 ENSRNOG00000014169 ENSRNOT00000018963 2 1 1 60 7 72599746 72599765 GTGAAGGATGGGAAGTACAG 58 72599788 72599806 CCTCATGCAGCTTGTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.5 ENSRNOG00000058678 ENSRNOT00000080532 3 1 1 94 20 4964477 4966304 GTCATGGTACACAGCTGGT 60 4964401 4964420 AAGGACAAGATCAGCGAGTC 60 Novel Rattus norvegicus 81 Rn60_20_0050.1 ENSRNOG00000057879 ENSRNOT00000089121 2 1 1 60 20 4910693 4910712 AGAAGGCCAAATACAGACAG 58 4910732 4910753 AGCCATGTATATGACAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030603.2 ENSRNOG00000052459 ENSRNOT00000085552 2 1 1 72 10 95431205 95431224 TGCATAAAGCTTGTCTCACC 59 95431152 95431173 CATTCTCTTACTATACAGCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 3 1 1 67 7 380961 381671 TAAGTTCAGCTCCCAGAGG 58 381701 381720 TAAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058530 ENSRNOT00000081656 2 1 1 60 8 126876706 126876724 CGATGAAGAATGCAGCCAG 59 126876747 126876766 TCCATGATCAATGTGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471 3 1 3 106 20 4873104 4873334 CACAATGAATGGGCTTTGC 58 4871892 4871911 TTAGCCCACATCTAGGTGAG 59 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 1 2 3 60 20 4871818 4871839 CATCTCATTGTCTAACAAGCCC 60 4871532 4871797 TTGAGTAGCAGCTAAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041053 ENSRNOT00000062806 3 1 1 60 8 39495991 39496013 ATCCTGGATATGTCTGATCTCAG 59 39496033 39496051 CCATCCAAGCACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041670 ENSRNOT00000063423 3 1 1 64 8 119868176 119868194 TTGGAAGCTAAGCAGGGTC 60 119868130 119868152 CTTTCTGGTCTTTCTGTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060720 ENSRNOT00000086743 1 1 1 60 8 64477628 64477647 AAAGTCATAGGAGACAGGGA 58 64477669 64477688 TCCTAAACTCAATGCCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071243.1 ENSRNOG00000046364 ENSRNOT00000071769 1 1 1 97 8 106582010 106582028 GAACAACATGAGCCTCTGG 59 106581930 106581949 TATCACCCAACCAGACACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051411 ENSRNOT00000077608 2 1 1 60 8 70362865 70362888 CTATGTCACATGTGTATCAGTAGG 59 70362828 70362849 AACCCTGAGCATAGACATATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054754 ENSRNOT00000080293 1 1 1 60 8 126890706 126890724 TCGATGAAGAATGCAGCCA 60 126890747 126890766 CCATGATCAATGTGTCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041865 ENSRNOT00000063618 3 1 1 60 8 122345813 122345834 CAATCTCATCTGATTTCAGGAC 57 122345853 122345873 TTTCCTGTTCAAGTACTAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096430.1 ENSRNOG00000050327 ENSRNOT00000072344 2 1 1 60 8 82512066 82512084 TGGCCTTGAACTCAGATCC 59 82512024 82512043 GCACATGCCTGTAATCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045047.1 ENSRNOG00000053110 ENSRNOT00000079499 3 1 1 60 20 32797863 32797883 ACATGACACATAGATGCACAC 59 32797823 32797841 TTCTGCTAACCCTCTTCCT 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000051919 ENSRNOT00000078450 2 1 1 60 3 98882005 98882023 CGTGTGATGCTATGTCACG 59 98881963 98881983 GAGGGAAGACATAGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051919 ENSRNOT00000078450 3 1 1 60 3 98882004 98882022 GTGTGATGCTATGTCACGT 58 98881962 98881981 TGAGGGAAGACATAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055360 ENSRNOT00000087882 1 1 1 83 3 15415343 15415361 CCACAGGTCAGGTACAGTG 60 15415278 15415296 CATCCATGTCGGCTTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000057340 ENSRNOT00000080125 3 1 1 60 16 39354477 39354495 ACACAACTTCCCAAATCCA 57 39354518 39354537 AATCACTCCATTTCCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026137.2 ENSRNOG00000059145 ENSRNOT00000092012 2 1 1 61 16 65257161 65257180 ACACAGATCCATACAGACAC 57 65257202 65257222 GTGTCTGTGTCTGTGTATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000059297 ENSRNOT00000086728 3 1 1 60 16 39146347 39146365 ACACAACTTCCCAAATCCA 57 39146388 39146407 AATCACTCCATTTCCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD12 ENSRNOG00000054081 ENSRNOT00000077844 1 1 1 60 3 163817261 163817282 GCTGATGATACCACTTCTTTCC 59 163817297 163817321 GGCTATTAGCATATGAGATCAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132741.1 ENSRNOG00000059369 ENSRNOT00000090188 1 1 1 80 3 160679303 160679322 GAAGTCCATCTTCTTCAGCC 58 160679363 160679611 TTTGTCCCACCATAGATTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051908 ENSRNOT00000092109 2 1 1 60 3 146825783 146825804 GTGTCACATGAGTATCAGTAGC 59 146825744 146825766 GAACACTCAACATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130232.1 ENSRNOG00000039505 ENSRNOT00000060549 3 1 1 60 16 19622218 19622237 TATGGACACCGAGTTTCCAG 60 19622258 19622278 AGCATTGCTTCTGAATTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059174 ENSRNOT00000084125 1 1 1 60 3 140565408 140565430 GGAACGATACAGAGAAGATTAGC 59 140565450 140565468 TTTCATGAATTTGCGCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 3 1 1 61 18 4600338 4600360 GATGGTGAGGAGAGTAATATCGA 59 4600380 4606777 CCATATCAGGAAGCCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014855.1 ENSRNOG00000054855 ENSRNOT00000079827 2 1 1 60 14 33960654 33960675 AAAGTATTGTAGACGCTATGGG 58 33960615 33960635 CAATTAAACCCAGGGCAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014897.2 ENSRNOG00000053882 ENSRNOT00000092190 2 1 1 80 14 36969977 36969997 ACTCAAGACCGAGATTGTAGG 59 36970038 36972075 CCTCCTGATGTACTCTGAGG 59 Novel Rattus norvegicus 81 AABR07031393.1 ENSRNOG00000052995 ENSRNOT00000082044 1 1 1 80 18 12140977 12141514 TACAGCTGCACTTCTTCCT 59 12141557 12141576 TGAACTTTGGATCATGCCAC 59 Novel Rattus norvegicus 81 AABR07015015.1 ENSRNOG00000056503 ENSRNOT00000085232 1 1 1 90 14 45395637 45396216 GCAAAGGAACAGAGGTCTC 58 45395565 45395583 GTGTAAATGCCCTGAGCAG 59 Novel Rattus norvegicus 81 AC111831.1 ENSRNOG00000054592 ENSRNOT00000077392 2 1 1 80 6 8176333 8201776 TTAGTCGTCAAGTATGTGCTG 58 8176273 8176291 GAGTCAGGGAAACAAAGGT 57 Novel Rattus norvegicus 81 AABR07015467.1 ENSRNOG00000061025 ENSRNOT00000077556 1 1 1 65 14 58196931 58196950 AGATGATTGTGACCACACTC 58 58213143 58213161 TCTTCTGTGTCTTCCTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AC097901.1 ENSRNOG00000052984 ENSRNOT00000080737 3 1 1 80 10 44148401 44148420 GGATTCTCCATATCAGCAGC 58 44147869 44148362 CACTTACTTTCTCATGGAGTCTG 59 Novel Rattus norvegicus 81 AABR07000436.1 ENSRNOG00000060284 ENSRNOT00000079436 3 1 1 85 1 12483554 12485325 AGAATAACGTTGTACAGGTCTC 58 12483490 12483508 CACTTGCATTAGCATGCTG 58 Novel Rattus norvegicus 81 AC128394.2 ENSRNOG00000056019 ENSRNOT00000085926 3 1 1 113 1 12757921 12757940 TAGAAGGAAAGACGGTGCTG 60 12683094 12757845 ATCTTCACGACCTTCCCTC 59 Novel Rattus norvegicus 81 AABR07030086.1 ENSRNOG00000055755 ENSRNOT00000079968 2 1 1 80 10 66631601 66674101 GGAATGTCCCTATCTAAGGTG 57 66674140 66674161 AAGGTAAACTCTTCCAGTTGAC 58 Novel Rattus norvegicus 81 AABR07015705.1 ENSRNOG00000053383 ENSRNOT00000079309 3 1 1 120 14 71309108 71309127 TCCTTCTCAACAGCAGAGTG 60 71308471 71309031 CATGCTATGAGCTGATATCTTAGAG 59 Novel Rattus norvegicus 81 AABR07047389.1 ENSRNOG00000059643 ENSRNOT00000077777 1 1 1 81 5 30720855 30720873 GCTCAACAGTGTCTAAGGG 58 30685062 30720816 CTAGTTCCATTTAGAGATAACCTGG 59 Novel Rattus norvegicus 81 AABR07047531.1 ENSRNOG00000060892 ENSRNOT00000079218 1 1 1 86 5 36692610 36692895 GCCTGAAGATTTGCACGAC 60 36692542 36692561 GTGATGGCCAGTTCATTCTC 59 Novel Rattus norvegicus 81 AABR07030221.1 ENSRNOG00000053130 ENSRNOT00000084816 1 1 1 61 10 76633570 76633588 GCTCACCTAGGAACCAGTC 60 76633613 76641209 TTCACAGCACCTCACAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07061246.1 ENSRNOG00000057830 ENSRNOT00000079910 2 1 1 68 4 111738357 111738376 AGGACCACCTTACTTCTACC 58 111743434 111743454 GTGGAAATCATCGTGTAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015800.2 ENSRNOG00000054686 ENSRNOT00000088703 1 1 1 80 14 77663702 77663720 CAGACACATCGGAGGAGAG 59 77660712 77660730 TCCAAGGAAGTTTCTGCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061251.1 ENSRNOG00000052497 ENSRNOT00000084551 2 1 1 110 4 111928333 111928353 TTTCTGATTCAGCCTCCTGAG 60 111928425 111933433 TTCCAGTAGCAAAGGCCTC 60 Novel Rattus norvegicus 81 AC098180.1 ENSRNOG00000061271 ENSRNOT00000079772 3 1 1 94 14 100133806 100133824 TAGGTACTCTTTCCCTGCG 59 100131850 100133748 CAGTCTTCCAACCTGTCCA 59 Novel Rattus norvegicus 81 AC127189.1 ENSRNOG00000053913 ENSRNOT00000083359 1 1 1 85 1 21704520 21704616 AGGATTAATGGGATCCGCG 60 21704453 21704471 AAACAACTGCCACAGTGTG 59 Novel Rattus norvegicus 81 AABR07030563.1 ENSRNOG00000057017 ENSRNOT00000080531 3 1 1 104 10 93137697 93137716 AACACCAAATTCTTCCAGGA 57 93137864 93137883 ACAGATGGACAGATAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048571.1 ENSRNOG00000060978 ENSRNOT00000086205 1 1 1 92 5 82997176 83004372 CAACTACTCGACTTGGGTG 58 83004428 83004446 TCCTTGGTGATGAAACCTG 57 Novel Rattus norvegicus 81 AABR07016558.2 ENSRNOG00000055797 ENSRNOT00000087831 3 1 1 118 14 103712518 103712536 GTACATTATCGCTGAGGCC 58 103712817 103712838 CTCTCACAATTTCTCTTCACAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 1 1 1 60 14 103887462 103887482 AGACTGGAAGACTCAGTTCAC 60 103887174 103887440 ATCCAGTGCTGAAGGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061455.1 ENSRNOG00000051463 ENSRNOT00000085346 1 1 1 80 4 125646356 125655285 CATCTAGCACAAGCGATGG 59 125655328 125655347 AGCAGCCAGGATCTATTCAG 59 Novel Rattus norvegicus 81 AABR07030568.3 ENSRNOG00000052645 ENSRNOT00000089357 2 1 1 81 10 93194075 93194096 TCTTGGAGACATGGGAATAGAG 59 93194137 93194965 GACCTTTCCATCATCAACGG 59 Novel Rattus norvegicus 81 AABR07048899.1 ENSRNOG00000059047 ENSRNOT00000086922 1 1 1 63 5 96373228 96373246 CTTTCATTACCGCAGCCTG 59 96378138 96378162 CTTGAGGAAATACTTTGATCCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061609.1 ENSRNOG00000057913 ENSRNOT00000087666 3 1 1 97 4 135877624 135886919 TTCATAATGAGGCCAACGC 59 135886976 135886998 GACTGGATAAACTCAACCTTCTC 59 Novel Rattus norvegicus 81 AABR07016672.1 ENSRNOG00000053953 ENSRNOT00000079374 2 1 1 94 14 110126476 110163490 TCTTATGCCAGGTGATGCC 60 110163548 110163566 ATGTTGATCCAATGGGCGA 60 Novel Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 3 1 1 65 14 112997204 112997224 GTCTTCACCTACTAGGAAGGA 58 112969559 112997180 TACCCATTGTAACATGACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016845.1 ENSRNOG00000060365 ENSRNOT00000087777 1 1 1 112 15 1618058 1618078 GGAGCTCTTTGAAGTTAAGGG 59 1492733 1617986 CTGTTCATTGGAAACCAAGAC 58 Novel Rattus norvegicus 81 AABR07001010.1 ENSRNOG00000057164 ENSRNOT00000087059 3 1 1 60 1 33068585 33068604 GTTCCTAAGGATGGTACCAC 57 33061945 33061964 AACTTCTGTATCGCTCAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030699.1 ENSRNOG00000053652 ENSRNOT00000083512 2 1 1 60 10 100410540 100410561 AAACCAGATTTACCTTTCCACC 59 100411698 100411716 ATTCTGAACCGTCTGACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001018.1 ENSRNOG00000053323 ENSRNOT00000089213 1 1 1 80 1 33794842 33794860 GGCATTGACTAAGCCTGTG 59 33794899 33797001 CTCTGTAGGCAATTCTTAGATTCG 60 Novel Rattus norvegicus 81 AABR07016947.1 ENSRNOG00000053368 ENSRNOT00000090163 3 1 1 80 15 5372444 5372462 AAACACAGTTCCTGGACAC 58 5367272 5372402 CTTCCGAATAAACCCTAAGCA 58 Novel Rattus norvegicus 81 AABR07001018.2 ENSRNOG00000054020 ENSRNOT00000088968 1 1 1 96 1 33967026 33979873 TCCAAGAAGTTGAAGGTCAG 58 33966949 33966970 GGATAGCTTTGAACTCATTCAG 57 Novel Rattus norvegicus 81 AABR07049389.1 ENSRNOG00000054826 ENSRNOT00000091586 1 1 1 60 5 120330034 120330052 TTAGATCGAAGCTCCCAGG 59 120325123 120325141 GTGTTCTTCCTCTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017159.1 ENSRNOG00000060406 ENSRNOT00000080380 3 1 1 160 15 14017863 14017881 GGATTGTAGTTCGTCCCGT 60 14018004 14044420 TCTTCTAAAGAGGGCCTTCC 59 Novel Rattus norvegicus 81 AABR07049508.1 ENSRNOG00000058843 ENSRNOT00000087485 2 1 1 81 5 124924698 124928629 ACAGAAACCCAAGTTTGATCC 59 124924637 124924656 GTCAGCAAAGGCATCTTCTG 60 Novel Rattus norvegicus 81 AABR07030880.1 ENSRNOG00000057341 ENSRNOT00000078771 1 1 1 80 10 107900930 107900948 GGAAGCAGACCTTCCTCTC 60 107902152 107902170 ATTCGTCCTGGCTAGACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062181.2 ENSRNOG00000060668 ENSRNOT00000078976 1 1 1 84 4 163915682 163920550 CTGCTTCAGAGGACTTAGC 58 163915616 163915636 ATGCCATATCAGATTCCAGAG 57 Novel Rattus norvegicus 81 AABR07062181.2 ENSRNOG00000060668 ENSRNOT00000078976 3 1 1 85 4 163915681 163920549 TGCTTCAGAGGACTTAGCC 59 163915614 163915636 CTATGCCATATCAGATTCCAGAG 58 Novel Rattus norvegicus 81 AC093960.1 ENSRNOG00000061275 ENSRNOT00000088076 1 1 1 62 15 18745569 18745587 GTACCCGATGGTGTCTTCC 60 18742962 18742983 CTGTAGTTCTTCATGACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC093960.1 ENSRNOG00000061275 ENSRNOT00000088076 2 1 1 63 15 18745569 18745587 GTACCCGATGGTGTCTTCC 60 18742961 18742982 CCTGTAGTTCTTCATGACATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062298.2 ENSRNOG00000052108 ENSRNOT00000083020 2 1 1 80 4 167558407 167558428 GGTAATACCTACTCAAGCTTCC 58 167558466 167560781 TTCTTATCTAGTAAGTGACCGC 58 Novel Rattus norvegicus 81 AC117905.1 ENSRNOG00000061352 ENSRNOT00000081041 1 1 1 80 5 126132200 126132965 AACGGATACATTGGAGATGC 58 126132139 126132157 TGAAGATCGGTGTGAATGG 58 Novel Rattus norvegicus 81 AC117905.1 ENSRNOG00000061352 ENSRNOT00000081041 3 1 1 80 5 126132199 126132964 ACGGATACATTGGAGATGCA 59 126132138 126132157 GTGAAGATCGGTGTGAATGG 59 Novel Rattus norvegicus 81 AABR07030939.1 ENSRNOG00000061691 ENSRNOT00000086613 1 1 1 80 10 110125574 110125594 TTTCCAGGTGAAATTGCTCAG 59 110125632 110126714 GTCTCCAAACAAAGTATCCACAG 60 Novel Rattus norvegicus 81 AABR07001233.1 ENSRNOG00000053328 ENSRNOT00000087610 3 1 1 81 1 39011832 39011852 GAAGATGCCTTGGATGATCAG 59 39008707 39011789 CCTTCTCTGACCAACCTCC 59 Novel Rattus norvegicus 81 AABR07001358.1 ENSRNOG00000053056 ENSRNOT00000081556 1 1 1 95 1 40255592 40255616 GCTCTGATCCATTTAGATATGTCTC 59 40232416 40255540 GCTTCTTGATGAGTTACGGG 59 Novel Rattus norvegicus 81 AABR07062404.4 ENSRNOG00000061000 ENSRNOT00000078565 3 1 1 83 4 175178066 175201220 GACATTGTCGAACAGATCCG 59 175178002 175178020 CTTGGATGCCAGTTCTTGG 59 Novel Rattus norvegicus 81 AABR07017716.1 ENSRNOG00000053509 ENSRNOT00000086032 2 1 1 87 15 30343525 30343543 TCATGCAGAGGGACAAGTG 60 30343235 30343474 TGGGCCACAATACATCCAG 60 Novel Rattus norvegicus 81 AABR07001477.1 ENSRNOG00000058103 ENSRNOT00000086348 1 1 1 95 1 46741848 46744049 GATACAAAGGGTTAAAGGAAGGG 59 46741775 46741793 ACATTGTTGCATGCTAGCC 59 Novel Rattus norvegicus 81 AABR07017815.1 ENSRNOG00000060777 ENSRNOT00000081380 3 1 1 85 15 31311443 31319303 AATGTTTGGAGGAAGCAATGG 60 31319349 31319368 AGTTCACAGTCAGAGAAGCC 60 Novel Rattus norvegicus 81 AABR07031931.1 ENSRNOG00000058859 ENSRNOT00000084025 2 1 1 81 18 39757017 39757038 AGCAGAGTGTAGAGGATAAAGG 59 39754671 39756977 AGTGGCAGAAGTAATTCACCT 60 Novel Rattus norvegicus 81 AABR07001634.1 ENSRNOG00000060438 ENSRNOT00000078019 1 1 1 118 1 54441387 54441405 CTCCATAGGTCAGTGTCCC 59 54441152 54441305 ACCACTGAAGGAACCTCTG 59 Novel Rattus norvegicus 81 AABR07031983.1 ENSRNOG00000051817 ENSRNOT00000091409 1 1 1 80 18 41919188 41919920 GCTGTTTGTGAGGTATGCT 58 41919126 41919145 TCTAGGAAGCTACAGATGGT 57 Novel Rattus norvegicus 81 AABR07001640.1 ENSRNOG00000055577 ENSRNOT00000082407 1 1 1 107 1 54500880 54500898 AACATCTGCCCAAATTGGA 58 54499816 54499834 TCTGATGGAGACTGTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072591.1 ENSRNOG00000056586 ENSRNOT00000090562 2 1 1 82 18 47339782 47350541 CAAGAAAGGTGGCTGTGTC 59 47339718 47339738 GGAAGATGTAGTTGTCCATGG 59 Novel Rattus norvegicus 81 AABR07050052.1 ENSRNOG00000059520 ENSRNOT00000087877 3 1 1 60 5 149264577 149264595 AGCATCAGAATCCTGGGAC 59 149264619 149264637 GAAAGAGATCGAGAAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050057.1 ENSRNOG00000061203 ENSRNOT00000086977 2 1 1 96 5 149430857 149430877 TTCAGCTTACAGTTCTGTCCT 59 149421118 149421136 GACTGAGACAGGAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032135.1 ENSRNOG00000054920 ENSRNOT00000090933 2 1 1 80 18 48828260 48853177 ACGGAAAGTTAAAGGCTCTC 58 48853218 48853238 ATGTTCTCAACAAGGTATGCC 59 Novel Rattus norvegicus 81 AABR07063581.1 ENSRNOG00000058114 ENSRNOT00000084534 3 1 1 80 6 36081903 36081922 AAGGAGAAGCCTCTCATGTG 60 36079038 36081863 GGCTCTATCCTCTAAATCAGCT 59 Novel Rattus norvegicus 81 AABR07018198.2 ENSRNOG00000057138 ENSRNOT00000081990 2 1 1 94 15 46523032 46527884 TATATGGTCCTGGCTCCAG 58 46527942 46527960 GAGAGGAAGTGACAGTCGT 59 Novel Rattus norvegicus 81 AC105604.1 ENSRNOG00000061285 ENSRNOT00000086938 3 1 1 91 18 52593719 52593739 TATATTGGAAGTCGATGGCTG 58 52593792 52600082 GTCTCCATTGCATAAGCGA 58 Novel Rattus norvegicus 81 AABR07050423.1 ENSRNOG00000054302 ENSRNOT00000085172 2 1 1 96 5 164359929 164359947 TATGCTCAGCAAATCTGCG 59 164356234 164359870 GGATTTGAGAACTGCATCCT 58 Novel Rattus norvegicus 81 AABR07018390.1 ENSRNOG00000060737 ENSRNOT00000078552 3 1 1 99 15 55406344 55406363 ATCTGATACCTCCAACTGGA 58 55405124 55406285 CCTTACTGTGTTGATTTCTTCC 57 Novel Rattus norvegicus 81 AC094126.1 ENSRNOG00000055715 ENSRNOT00000087064 1 1 1 81 5 164883509 164883527 AACCAAGACCTGTCACTGG 60 164883021 164883464 CAGGGTCTCTTCAGCTCTG 60 Novel Rattus norvegicus 81 AABR07032296.1 ENSRNOG00000058084 ENSRNOT00000079632 3 1 1 81 18 60253342 60254427 ATTAATCTGGTGTGGGAAACTG 59 60254469 60254487 TTCTAGACTGGGCAGAGAC 58 Novel Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000089212 1 1 2 81 18 68552207 68552736 TTTACCAGTCAGGAGGACAC 59 68552145 68552165 GGTAAGATCTGCTAGGGTGAG 60 Novel Rattus norvegicus 81 AABR07019091.1 ENSRNOG00000061423 ENSRNOT00000077263 1 1 1 80 15 87679339 87679876 TTGCCTTTGTGTCTAGTGTC 58 87679919 87679937 TGAGCAAATTCACGAGCAG 59 Novel Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 3 2 2 81 1 88265242 88266843 TTAAGGAAAGCAAAGGCTGG 59 88266882 88266905 GATGACTCTTCTTCATAGAGTTCC 59 Novel Rattus norvegicus 81 AABR07051326.1 ENSRNOG00000055302 ENSRNOT00000088366 3 1 1 80 3 4943561 4943580 TATGGGATGTGAAGACAGGG 59 4943622 4947086 CACGATTGAAATGAACGGCT 60 Novel Rattus norvegicus 81 AABR07019137.1 ENSRNOG00000052807 ENSRNOT00000084183 1 1 1 80 15 90675920 90687064 TCCTTCGACAAAGTCCTGG 59 90687108 90687126 ATGGCTCCTTCCTTACTCG 59 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000085953 3 1 2 83 1 89675286 89675305 GAATGGGAAGATCTGGACCT 59 89675350 89682474 CTTCGTCACTCAGTGAAAGC 59 Novel Rattus norvegicus 81 AC127118.1 ENSRNOG00000054696 ENSRNOT00000085546 1 1 1 100 18 79590297 79590315 GTTTGCATCACACTGGGAG 59 79590379 79590509 TCACGATGAAGTCACCCAG 59 Novel Rattus norvegicus 81 AABR07064578.1 ENSRNOG00000054231 ENSRNOT00000090793 2 1 1 80 6 85561528 85561548 CATCACTGAGCTGTATTACCA 58 85552778 85561488 TATCATTGACTGAGTGTGAGC 58 Novel Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 1 1 1 60 3 17198623 17198643 ATCAGCTTGTGATTTCCTGAC 59 17198663 17208066 ATACTTGTTGTGGATGCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000089772 1 1 2 60 1 94092726 94092744 CCCAAGATGTCAAGCTCAG 58 94092684 94092705 CAAGTTTCTAGGAGTTTCTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019442.2 ENSRNOG00000059922 ENSRNOT00000090685 2 1 1 80 15 105942200 105942221 CAGAATCAGGACAGAATTAGGA 57 105942262 105942931 GGAGTGTGACTCTGAAAGG 58 Novel Rattus norvegicus 81 AABR07019443.1 ENSRNOG00000061313 ENSRNOT00000086918 2 1 1 61 15 105989068 105989087 TGACATATCTTCGCTGAGGT 59 105986914 105989044 TCTAGCTGGGAGAGTCCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07020222.1 ENSRNOG00000056953 ENSRNOT00000086183 1 1 1 80 13 18648433 18650502 CAAAGAAGGAAGCAAGGCTC 60 18650542 18650563 GATTCTCATTCCAGCTAGTGAC 59 Novel Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 3 1 1 62 1 97131261 97133592 TACAGTGTTGAAACGAGCTG 59 97133617 97133635 TTCTGGAATCCACCAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033607.1 ENSRNOG00000058541 ENSRNOT00000078276 3 1 1 108 11 29700495 29700514 TCAGTTCGTGATCTACCCTG 59 29699397 29700424 AAATGGCATCTGGGAAAGG 58 Novel Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000080210 1 1 2 70 1 104287507 104287525 AAGAGAAAGCCCGTCACTC 60 104352005 104352023 TTTCTAGTCCCTGGAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 2 1 1 96 3 30111697 30111716 AATTCATGTGAACCCTCACG 59 30111775 30111917 AAGTCCGAGCCAAATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.1 ENSRNOG00000053695 ENSRNOT00000078384 1 1 1 80 3 30280790 30283065 GAAAGAAGCCAGGTTTGGG 59 30280728 30280747 CCAGTTTGGTTGACAGTGAG 59 Novel Rattus norvegicus 81 AABR07065122.1 ENSRNOG00000056386 ENSRNOT00000090377 2 1 1 93 6 110840510 110840529 CAGAATCCTCCTATTGTCCC 57 110842291 110842309 ACTTTGGCTCTTTCCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021023.1 ENSRNOG00000052244 ENSRNOT00000078629 3 1 1 83 13 53875991 53877568 GTGGGACCTTAGGAAGATCC 59 53877614 53877632 CCGAACTCCATCACTTGTG 59 Novel Rattus norvegicus 81 AABR07033869.1 ENSRNOG00000057860 ENSRNOT00000084139 2 1 1 99 11 41883703 41884189 ACCCACAGTTGTTCAAACC 59 41883622 41883640 GATTCACTGAAACCCAGCA 58 Novel Rattus norvegicus 81 AABR07033869.1 ENSRNOG00000057860 ENSRNOT00000084139 3 1 1 99 11 41883703 41884190 TACCCACAGTTGTTCAAACC 58 41883623 41883641 ATTCACTGAAACCCAGCAG 58 Novel Rattus norvegicus 81 AABR07052389.1 ENSRNOG00000055701 ENSRNOT00000083309 1 1 1 80 3 50816224 50816245 AAAGTGTCTGCTGCTAATTGAG 59 50816280 50817621 GACATATAGACACTTAGTTCTGACC 59 Novel Rattus norvegicus 81 AABR07052390.1 ENSRNOG00000057218 ENSRNOT00000086277 1 1 1 80 3 50857126 50858461 TCCATGTCATTGCATATCAGC 59 50857066 50857088 CTGCTTCTATCCATGAATATGGG 59 Novel Rattus norvegicus 81 AABR07034073.1 ENSRNOG00000057150 ENSRNOT00000078314 2 1 1 81 11 51208819 51212231 CTACACCAAGGAGTGTTCC 58 51212276 51212294 TGGCTGCTCTTTGTATGTG 58 Novel Rattus norvegicus 81 AABR07003713.1 ENSRNOG00000051601 ENSRNOT00000088805 1 1 1 103 1 117799132 117799831 GAGGCCTTGTTACACTGTG 59 117799047 117799067 CAGTCAGTTCATAGACATGCT 58 Novel Rattus norvegicus 81 AABR07021465.2 ENSRNOG00000058710 ENSRNOT00000083523 2 1 1 80 13 73868445 73868464 CATTTGTAGATCAGGTGGCC 59 73867931 73868403 GAGCGGAAGTATCAACATGG 59 Novel Rattus norvegicus 81 AABR07065349.1 ENSRNOG00000054787 ENSRNOT00000083679 1 1 1 82 6 123153246 123153610 GTTGAAATGTGTTTCCTCCAG 58 123153184 123153203 GATTCGTTCTGAGGTGAGTC 58 Novel Rattus norvegicus 81 AABR07065364.1 ENSRNOG00000061184 ENSRNOT00000083777 3 1 1 69 6 124247206 124247224 AGAGAAGAATCAGGTCGGG 59 124247725 124247744 TTTGTGAACTGTAAGCTGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052541.1 ENSRNOG00000056244 ENSRNOT00000084655 2 1 1 90 3 60681734 60683038 ATTTGGCTGCCAGTATTTGC 60 60683089 60683109 TCCAGTAACTACGCTCAACTG 60 Novel Rattus norvegicus 81 AABR07003841.1 ENSRNOG00000057034 ENSRNOT00000087187 1 1 1 93 1 118977812 118977830 ATGAAGACAAGCCCATCCC 60 118976539 118976559 CCTCCGTATTGTCTAGAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004085.1 ENSRNOG00000061295 ENSRNOT00000086546 3 1 1 84 1 124059667 124076270 CTAAGAGCACAGCAATGGAG 59 124059602 124059620 TATTTACTGCCGCAGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 2 1 1 65 1 124929435 124929453 AAGTACACATGGGACGTGG 60 124929125 124929407 AAACAACCTTGTTCTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004130.1 ENSRNOG00000053064 ENSRNOT00000085207 2 1 1 80 1 126387455 126403287 GAAGCTGTGGGTAACTCCA 59 126387393 126387413 CGTCTTAGAGAAGGTTTCCCT 59 Novel Rattus norvegicus 81 AABR07034745.1 ENSRNOG00000058421 ENSRNOT00000087019 3 1 1 80 11 86505943 86505964 GAACCATGAAGGAAACCAAGAC 60 86504530 86505903 TTTCCTGTACTGTGCTGGAG 60 Novel Rattus norvegicus 81 AABR07072264.2 ENSRNOG00000052689 ENSRNOT00000089244 2 1 1 81 11 86921979 86923571 AAGCAAAGGAATGGCAAGAC 60 86921917 86921935 CAGTACTGGGCTCTGTACC 59 Novel Rattus norvegicus 81 AABR07021910.1 ENSRNOG00000058321 ENSRNOT00000086734 1 1 1 80 13 97627637 97627655 CAGGAACCTGGTACGAGAC 60 97626829 97627593 ATTCCTGGACCTGGATTGC 60 Novel Rattus norvegicus 81 AABR07034750.1 ENSRNOG00000060228 ENSRNOT00000090971 3 1 1 91 11 87346237 87346256 CAGAATGGACCTGTCTTTGC 59 87346310 87355144 ACAATGTCACCAACCTCCA 59 Novel Rattus norvegicus 81 AABR07004221.1 ENSRNOG00000051696 ENSRNOT00000086793 1 1 1 103 1 130652246 130652264 ATATCGTGGTTGCTCTCCA 59 130651257 130651275 AAAGTCTGGCTACAAAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004227.1 ENSRNOG00000058019 ENSRNOT00000084862 2 1 1 80 1 131139177 131140076 CAGGATGAAGGTACCCAGAC 60 131140118 131140137 GGGCTACTTGAGATGTAGCT 59 Novel Rattus norvegicus 81 AABR07052894.1 ENSRNOG00000060152 ENSRNOT00000081781 1 1 1 81 3 81753763 81754098 AGGGAATGAAAGGAGAAGACAG 60 81753703 81753721 CTCACCCAGTCCTCAAGTG 60 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 2 1 2 105 12 3807802 3807929 TCATGAAGGCATACTCCCTG 59 3808637 3808655 CAGAAGGCCTCTTCCTCAG 60 Novel Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 2 1 1 98 6 141112439 141112565 GATGTCCAGTGTGAAGTACAG 59 141112361 141112379 GAAAGTGAATCCCGAGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035083.1 ENSRNOG00000059996 ENSRNOT00000079086 3 1 1 66 12 4170955 4170979 GAGCATATCTATACTGAAGTGACAG 59 4177600 4177618 GAACAAGGCCATGTCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053118.1 ENSRNOG00000058450 ENSRNOT00000084353 3 1 1 103 3 92139499 92139812 CATAATTGGCATCAAGCAACAG 59 92139876 92139894 AGCACAGTGATGGAAGGAC 60 Novel Rattus norvegicus 81 AABR07053293.1 ENSRNOG00000053538 ENSRNOT00000082187 1 1 1 60 3 97221347 97221367 CTGATAGCCCAACTCAAAGTG 59 97221385 97223570 GTCTCTGCTATAGACTGTTTCTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07035382.1 ENSRNOG00000059403 ENSRNOT00000092129 3 1 1 106 12 12112037 12112055 CTCTCCCAGACACTGACAG 59 12112125 12113403 TGGGAATAGTTGCTCCTGG 59 Novel Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 1 1 1 87 12 13450394 13450412 CTGTTTCTGCTGCTTCCTG 59 13450460 13450813 GAATTTCTTCGAGTACACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072272.2 ENSRNOG00000054368 ENSRNOT00000090591 2 1 1 134 12 13468581 13470915 AACTCCATGGAACCCTTCTG 60 13471012 13471030 TACTTACCAGGCATCAGCG 60 Novel Rattus norvegicus 81 AABR07066435.1 ENSRNOG00000049194 ENSRNOT00000083795 2 1 1 81 9 8853174 8853192 TATGTGGAGGCAAAGAGGC 60 8817732 8853130 AATTTCAGACCTGCTGTTGC 60 Novel Rattus norvegicus 81 AABR07024648.2 ENSRNOG00000056373 ENSRNOT00000077775 2 1 1 82 16 10107644 10112020 GCTTTGAATAGGCATTTGTGG 59 10112064 10112082 TCCAACTCAGGTTGTCAGG 59 Novel Rattus norvegicus 81 AABR07024648.1 ENSRNOG00000051628 ENSRNOT00000081641 3 1 1 82 16 10163954 10163974 CCTCTGGATCTACCGATACTC 59 10164015 10164304 GTAATCTGTAACTCACGAGCTC 59 Novel Rattus norvegicus 81 AABR07004482.2 ENSRNOG00000059905 ENSRNOT00000083794 1 1 1 94 1 144895956 144895974 TAAATCCAGTCGCTGAGTG 57 144892230 144895900 AGAACAGACCTGAAATGTCTC 58 Novel Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 2 1 1 76 16 19807083 19807216 CAGGTCTTACAGAAACGGTG 59 19807026 19807044 AAGATACTGTGGAGGAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.1 ENSRNOG00000052332 ENSRNOT00000091769 2 1 1 91 9 20463858 20463876 GCCTTGGTTTCTTAGACCA 57 20463931 20466459 GGTCAGCTTCAAGAGACTC 58 Novel Rattus norvegicus 81 AABR07066875.1 ENSRNOG00000061311 ENSRNOT00000088374 2 1 1 80 9 20728678 20730146 TAACTTCAGGTACCGGGTG 59 20728616 20728634 CAAACAGGTGCCTTTGGAG 59 Novel Rattus norvegicus 81 AABR07053814.1 ENSRNOG00000059431 ENSRNOT00000088942 3 1 1 91 3 127674596 127674614 CCATAATCGTGTTGCTGCT 59 127674669 127677083 GTAGATGAGGAGCTGGGTC 59 Novel Rattus norvegicus 81 AABR07005031.2 ENSRNOG00000060840 ENSRNOT00000078119 1 1 1 99 1 176050353 176050371 AACATGAACACAGGAGCAC 58 176050434 176052780 AGTCTTCGATTCCTCTGGA 57 Novel Rattus norvegicus 81 AABR07053847.1 ENSRNOG00000055284 ENSRNOT00000086551 1 1 1 80 3 130435154 130455278 GACAACAGATGGTGCATCAC 60 130455319 130455339 TACTGTCCTTGTAAGCGTCTC 60 Novel Rattus norvegicus 81 AABR07053849.2 ENSRNOG00000057184 ENSRNOT00000084508 3 1 1 70 3 130642115 130642134 CCATATTCCAGTGGTCAGCA 60 130640521 130642082 TCATGAGGTTTGTTGTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035835.1 ENSRNOG00000054158 ENSRNOT00000085474 3 1 1 80 12 24448389 24448407 TTGTGCTTCCTACACAAGC 58 24447370 24448346 AACCTTTGACCTTTGACCTG 58 Novel Rattus norvegicus 81 AABR07025385.1 ENSRNOG00000054260 ENSRNOT00000077277 3 1 1 80 16 36261540 36261559 GATATTCACCTTGTTGCAGC 58 36260084 36261500 GAGTGAATAATGTCCTGATGTG 57 Novel Rattus norvegicus 81 AABR07053953.1 ENSRNOG00000053531 ENSRNOT00000079800 1 1 1 80 3 133764865 133778900 ACCCACAAAGAACAAAGTCAC 59 133764805 133764825 TATAGCAGGAGCTGATGATGC 60 Novel Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 1 1 1 71 12 28024990 28025307 GGAATACTGAATGGAAGAATCCAG 59 28024942 28024962 ATTAATGAGCCCAATCAGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054025.1 ENSRNOG00000052276 ENSRNOT00000085307 1 1 1 80 3 136596731 136596749 AAATCTCCTTCTCCCAGGG 58 136596227 136596687 AAGTTGTCAGTCCAGTCCT 58 Novel Rattus norvegicus 81 AABR07025937.1 ENSRNOG00000053393 ENSRNOT00000085445 1 1 1 80 16 55897924 55897942 ACATGCAAAGACCAGTCCA 60 55897984 55899654 GTCTTCAGAACAAACTCCCAG 59 Novel Rattus norvegicus 81 AABR07036304.1 ENSRNOG00000057802 ENSRNOT00000085196 2 1 1 68 12 37106468 37106486 TAGTCACTGAAGTTGCCTG 57 37117531 37117549 CATACTAACGTCCAGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026012.1 ENSRNOG00000060807 ENSRNOT00000084522 1 1 1 65 16 58938473 58938491 GACTTAGTGGCTGTGGAGG 60 58937767 58937785 AACCAATTCTGTCTGCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026021.1 ENSRNOG00000055088 ENSRNOT00000086846 1 1 1 117 16 59517088 59517108 GTGCTTCTAGGAGGATTAGAG 57 59524208 59524226 CTTCTTCTGTGCCTTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000088948 1 1 2 80 16 59999882 59999903 CATTTCCAAGGAGCAAATTTGC 60 59999477 59999844 TCACCTGGATTTAAACAGTCCA 60 Novel Rattus norvegicus 81 AABR07026048.1 ENSRNOG00000058880 ENSRNOT00000083953 3 1 1 85 16 61217852 61218164 GTTCACACCAAATAAAGCCAC 58 61218208 61218229 ATTGAGATCTTCTGTCAGACTG 58 Novel Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 3 1 1 63 16 64877670 64877688 AGAATGGATGTCAACGCAG 58 64877715 64878378 ACTCTTCTGAATGCTTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036413.1 ENSRNOG00000054311 ENSRNOT00000084328 2 1 1 61 12 42519286 42519304 TCTCAGATACCAACCGCAC 60 42518429 42518447 TTTCCATGACGGAGATGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067767.2 ENSRNOG00000061265 ENSRNOT00000085441 3 1 1 81 9 62499135 62499155 CCTAACAGAGAAGTAACGTCC 58 62485680 62499093 AATTTCTGGACCTTTGCCTG 59 Novel Rattus norvegicus 81 AABR07054554.1 ENSRNOG00000059169 ENSRNOT00000080353 1 1 1 80 3 160047042 160047062 GATGCTTATGCCTCATTTCGT 59 160045987 160047004 CCTTTATCTCTAGCAAACTTGGG 59 Novel Rattus norvegicus 81 AABR07054593.1 ENSRNOG00000057352 ENSRNOT00000078986 3 1 1 92 3 162690302 162690320 GAGAAGCCAGAGGGAATGG 60 162688648 162690248 CAGCTTTAAGATCAAGGCAGG 59 Novel Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 2 1 1 73 12 49031218 49034030 AGGACCTCATTGCACAGTC 60 49034067 49034085 CTTGGCTTCTTCCAACTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036626.1 ENSRNOG00000051412 ENSRNOT00000083327 3 1 1 66 12 50622001 50622019 AACTCCAAGAATCGTCCCT 58 50623566 50623585 GGCTGCATATTTCTCTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036627.1 ENSRNOG00000059217 ENSRNOT00000078550 2 1 1 80 12 50649858 50651756 TCAAGGATACAGGTACTTGGTG 60 50651796 50651815 TTCTCAGTGCTATCTCCGTG 59 Novel Rattus norvegicus 81 AABR07026377.1 ENSRNOG00000061180 ENSRNOT00000082297 3 1 1 61 16 74513534 74513552 GCAAAGTGGTTGGATTGGA 59 74515448 74515466 CAAAGCAATGTGCTCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054752.1 ENSRNOG00000054244 ENSRNOT00000080321 3 1 1 81 3 168603864 168603883 ATTTGAAGCCTTCAGAGTGC 59 168603927 168604054 CTGGAACTGCCTTGATCCT 59 Novel Rattus norvegicus 81 AABR07068035.1 ENSRNOG00000057294 ENSRNOT00000078904 3 1 1 101 9 78487468 78487486 AAGGCCCAATTCAAACCAG 59 78487551 78501518 TCCACAGTACAGAGACCTG 58 Novel Rattus norvegicus 81 AABR07037104.1 ENSRNOG00000060484 ENSRNOT00000084383 3 1 1 82 X 12882485 12885187 TGACATCCATGGAACTGGT 59 12885230 12885251 GAAGATACGTGGTAACAGTGAG 59 Novel Rattus norvegicus 81 AABR07054822.1 ENSRNOG00000052166 ENSRNOT00000087924 1 1 1 80 3 170773585 170773603 GCTTCTCCTCGTATCTGCA 59 170772522 170773541 CATCCTGCATCCTCATCCT 59 Novel Rattus norvegicus 81 AABR07054837.1 ENSRNOG00000058726 ENSRNOT00000078943 2 1 1 145 3 171242108 171243419 ATGCTGACCATGATCAGGG 60 171243649 171243668 TTAGCAAGTACCTGGGTGTG 60 Novel Rattus norvegicus 81 AABR07022162.1 ENSRNOG00000053159 ENSRNOT00000088762 3 1 1 80 13 110479892 110480845 GGGCTGAACAGAAGTTTCTG 59 110479831 110479850 TGCTCTCACAGAACTCTGAG 59 Novel Rattus norvegicus 81 AABR07072028.1 ENSRNOG00000056436 ENSRNOT00000091800 2 1 1 82 1 226794325 226794343 CTAGGCCAGTGTCAGAACC 60 226794386 226811725 GTGTGATACATTTCTGGTGTCG 60 Novel Rattus norvegicus 81 AABR07068085.2 ENSRNOG00000058000 ENSRNOT00000082329 1 1 1 111 9 82791525 82791544 AGAAGAGTGGGATGGAAGAG 59 82785605 82785623 CAAATCGTCCGGGATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068085.1 ENSRNOG00000055174 ENSRNOT00000088612 3 1 1 80 9 82828685 82828706 GAAGATTTCTCTTCCCAGTGAC 59 82826488 82828645 TGTTGGTCATAAATGCCTGC 59 Novel Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000078709 2 1 2 78 3 174035648 174035666 ACATCTCTTGAGCTGCTGG 60 174046850 174046870 CAGATTCTTCTGGCTTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006311.1 ENSRNOG00000060420 ENSRNOT00000079478 1 1 1 80 1 228815491 228815511 TCTTGTAGAAGAGCTGACCTG 59 228793684 228815450 ACACAGTCTTCCTTACCTGC 60 Novel Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 2 1 1 60 X 28942390 28943204 CATTAGGTCTTTACTAATAGCCTGG 59 28943222 28943240 AGCCTTCTCTGAAATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 3 1 1 61 X 28942390 28943204 CATTAGGTCTTTACTAATAGCCTGG 59 28943222 28943241 TAGCCTTCTCTGAAATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC135298.1 ENSRNOG00000061054 ENSRNOT00000081754 3 1 1 81 3 176393657 176395145 GTCTATTCAGGTCAGATGTCAG 58 176393597 176393617 GATGACAATCGAAAGGTTGTG 58 Novel Rattus norvegicus 81 AABR07006542.2 ENSRNOG00000058035 ENSRNOT00000086926 1 1 1 98 1 239313386 239318843 CTGAAATGTGAGGGCTGTC 59 239313306 239313325 CTCTGATGACTCTTTGTCCC 58 Novel Rattus norvegicus 81 AABR07039203.1 ENSRNOG00000053721 ENSRNOT00000092164 2 1 1 81 X 71595920 71596403 CAGCAGTGAAGAATACATGCC 60 71600104 71600122 GGGATTGTCAGAGTCCGAG 60 Novel Rattus norvegicus 81 AABR07039233.1 ENSRNOG00000060509 ENSRNOT00000079320 3 1 1 80 X 72707304 72707416 GAGGGAATATTATCCAGCACTC 58 72707457 72707475 GTTTGATGGGTCCCATGTG 59 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000082368 3 1 2 80 7 20867906 20867925 CCTGTAGATGACCCACAGAG 59 20856793 20867863 GAAGCATCCACATTGGCTC 59 Novel Rattus norvegicus 81 AABR07039697.1 ENSRNOG00000058861 ENSRNOT00000087618 2 1 1 80 X 82840087 82845587 CTTGACTGAATGGGATGTGG 59 82840026 82840046 GCAGGTTATCCTTCTCATTGC 60 Novel Rattus norvegicus 81 AABR07068420.1 ENSRNOG00000058051 ENSRNOT00000079101 3 1 1 88 9 104555221 104559627 TATGATGGGATGCAATGCTG 59 104545409 104545429 TGGTCAACCCTTCTTTAATGC 59 Novel Rattus norvegicus 81 AABR07056330.1 ENSRNOG00000056314 ENSRNOT00000090134 3 1 1 84 7 22496873 22496891 TCTCCTAAGCAAGGAGGTG 58 22495675 22496828 ATTAATGGACCTTGTCAGACAG 58 Novel Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 2 1 1 80 9 106784552 106784573 GAGGATGTGTCTCATTGTACTG 59 106734761 106784511 AAATGACCGGAAAGTGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040481.1 ENSRNOG00000052994 ENSRNOT00000088056 3 1 1 81 X 102051444 102055767 AACAAACTAAAGGAAGAGGCC 59 102055807 102055828 GGCACAGATGTCCATTTAAGAG 60 Novel Rattus norvegicus 81 AABR07026971.1 ENSRNOG00000054646 ENSRNOT00000081789 2 1 1 97 17 7875652 7875670 GAATTGGAAGCAGACAGGT 58 7875224 7875242 AAATGGAACTGGGCTAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026972.1 ENSRNOG00000056679 ENSRNOT00000079209 1 1 1 90 17 7966508 7966526 CTCCTCAGGAACCTCAGAG 59 7966579 7966887 AGAACCAACTCATTTCCTGG 58 Novel Rattus norvegicus 81 AABR07026984.3 ENSRNOG00000055805 ENSRNOT00000086573 3 1 1 86 17 8394338 8394356 GAGACTCTGTGTCTCCCAC 59 8394403 8395652 TGCATCTTCACACTAGTATCCA 59 Novel Rattus norvegicus 81 AABR07040629.1 ENSRNOG00000052831 ENSRNOT00000080500 3 1 1 85 X 106749564 106749583 TTATCTCCGTGAAGGAAGGC 60 106748244 106749516 ACAGACTTGAAGACCTGCC 60 Novel Rattus norvegicus 81 AABR07026986.1 ENSRNOG00000057787 ENSRNOT00000085522 1 1 1 89 17 8523999 8524017 ATTCTCCATCGCCTCACAC 60 8523036 8523949 CCGCATATCTTCAGCTTTATGG 60 Novel Rattus norvegicus 81 AABR07056515.1 ENSRNOG00000059844 ENSRNOT00000077957 3 1 1 101 7 27973773 27973953 GAGATGATATTCAACTGTGCCA 59 27974015 27974033 CTTCACGTCTTCCTGACTG 58 Novel Rattus norvegicus 81 AABR07027010.2 ENSRNOG00000061562 ENSRNOT00000083981 3 1 1 83 17 10652153 10652171 TGCAGATTCACGGTAACAG 58 10652213 10652920 CTCCAGTACTTGTCTCATTATCTG 59 Novel Rattus norvegicus 81 AABR07056576.1 ENSRNOG00000054263 ENSRNOT00000087101 2 1 1 94 7 30507258 30527255 AATCTGCTAAGGCTGTGGA 59 30527313 30527331 TAAAGATGCAGTCGGTGGA 59 Novel Rattus norvegicus 81 AABR07006889.1 ENSRNOG00000053185 ENSRNOT00000084817 3 1 1 81 1 262929401 262929419 ACTTGTATGCTCCGAAGGA 58 262929462 262931412 ATAAGTTGCTCAGCTTCTTCC 58 Novel Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 3 1 1 103 19 8368612 8404461 CTGAGTCAGCACCAAACAG 59 8368527 8368546 TGATTCTTGTGGAGATGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000088140 2 1 3 80 8 5160040 5160687 ATCCAAAGAATGCTAAGCGT 58 5159979 5159999 CATGGGAGTACTGTACATTGG 58 Novel Rattus norvegicus 81 AC097778.1 ENSRNOG00000056945 ENSRNOT00000090397 1 1 1 80 8 13398660 13398678 GATGTGGGAAGTCCGACTC 60 13398721 13403865 GCAAATTAGTCCATGGTGGG 59 Novel Rattus norvegicus 81 AABR07043001.2 ENSRNOG00000060505 ENSRNOT00000080200 2 1 1 84 19 16168706 16168724 ACATGAAACAAGTGAGCCT 57 16168167 16168658 CGTCTGATGTGTTCCTCTG 58 Novel Rattus norvegicus 81 AABR07027309.1 ENSRNOG00000060680 ENSRNOT00000082678 2 1 1 93 17 23795804 23803933 ACAGGATCTAGATCCTGACTG 58 23803988 23804006 AAGCAGGAGTTATCTGCTG 57 Novel Rattus norvegicus 81 AABR07069235.1 ENSRNOG00000056348 ENSRNOT00000090990 1 1 1 88 8 14192099 14192117 AAGTTGTTCTCATGCCAGG 58 14200876 14200897 CGTTGTTCATATCTGTTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043030.1 ENSRNOG00000055058 ENSRNOT00000083618 3 1 1 60 19 17928888 17928907 CATCAAACACAGCTTCACTC 57 17926610 17926629 AGAGAAAGCTATGCAGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056998.1 ENSRNOG00000052964 ENSRNOT00000083398 2 1 1 66 7 50639891 50639910 CTAAAGGGCTTTCTCCCTCC 60 50639939 50640311 GATGCCACGATCATCTTGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07027381.1 ENSRNOG00000051539 ENSRNOT00000089081 1 1 1 80 17 27218580 27218600 TCTCAGAGTGTTTATGACAGC 58 27218639 27219542 TCTTTAATAGCCACTGTGACTC 58 Novel Rattus norvegicus 81 AABR07043075.1 ENSRNOG00000055175 ENSRNOT00000084812 3 1 1 91 19 19229618 19236467 AGAAAGCAGGGTGTTACCA 59 19236521 19236540 AACTTCATTGGCTTCATGGC 60 Novel Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 2 1 1 68 1 273968429 273969815 AAAGACTGTTAGCGGTCTG 58 273968379 273968397 CATGAGTCTGCTTGGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057231.1 ENSRNOG00000056491 ENSRNOT00000091512 3 1 1 112 7 61874693 61874711 AATTTCTTCCGCGTTCAGC 60 61851308 61851327 GAAACTGTCTTCCTAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069587.2 ENSRNOG00000051630 ENSRNOT00000090792 1 1 1 88 8 32638716 32638734 GAACAGTGGCTTGTGTTGG 60 32646572 32646592 GCATCTGTCACTAGATCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069587.2 ENSRNOG00000051630 ENSRNOT00000090792 2 1 1 88 8 32638716 32638734 GAACAGTGGCTTGTGTTGG 60 32646571 32646592 GCATCTGTCACTAGATCTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 3 1 1 75 1 274172655 274175035 AAAGGAATGCACATCCTGG 58 274172598 274172616 ATGGCAAGTGATGAACAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027476.1 ENSRNOG00000053846 ENSRNOT00000089320 3 1 1 82 17 32421269 32421287 TGATGGTGATGCTCAACTG 58 32418501 32421223 AGCCTTTCTCATCCATGTG 58 Novel Rattus norvegicus 81 AABR07057390.1 ENSRNOG00000051608 ENSRNOT00000080633 1 1 1 80 7 69565510 69565530 CTCACCTGTGGAATTAAGTGG 59 69560156 69565468 CAATGCTGACTTACACCCA 58 Novel Rattus norvegicus 81 AABR07057390.1 ENSRNOG00000051608 ENSRNOT00000080633 3 1 1 80 7 69565508 69565527 ACCTGTGGAATTAAGTGGTG 58 69560153 69565465 CAGCAATGCTGACTTACAC 57 Novel Rattus norvegicus 81 AABR07028906.1 ENSRNOG00000061539 ENSRNOT00000081812 1 1 1 80 10 3043 5072 GAGATTGGTGAGAAGGGTG 58 2981 3000 AGAGTTACAATACACAGCCC 57 Novel Rattus norvegicus 81 AABR07028906.1 ENSRNOG00000061539 ENSRNOT00000081812 2 1 1 80 10 1134 2895 GCCTACTGAAGAACAAGACAC 59 1074 1095 TCATGACAATGATGACATCCAC 59 Novel Rattus norvegicus 81 AABR07043698.1 ENSRNOG00000054321 ENSRNOT00000084956 2 1 1 92 19 36126059 36126606 CCTTCTAGGTACTGTGACTCG 59 36125987 36126005 GCTATGGGTCTTCCTGGTG 60 Novel Rattus norvegicus 81 AABR07028945.1 ENSRNOG00000052005 ENSRNOT00000079837 3 1 1 86 10 377256 377274 TCGTGAAGCCAAGAAACAC 59 377322 381679 ACATACAGAGGAGTGTCACAG 59 Novel Rattus norvegicus 81 AABR07007391.1 ENSRNOG00000058141 ENSRNOT00000080120 2 1 1 80 2 12128488 12130269 AATGGGAACCAGATTGGAG 57 12128426 12128444 TCACATTAGTCAGCGTACC 57 Novel Rattus norvegicus 81 AABR07028998.1 ENSRNOG00000057152 ENSRNOT00000086268 2 1 1 80 10 1771585 1771605 TGTCTCCTAGAATCCATGTCC 59 1771645 1772631 ACCATCATCCCTGTAATCCAC 60 Novel Rattus norvegicus 81 AABR07029351.1 ENSRNOG00000055712 ENSRNOT00000084752 1 1 1 106 10 24519555 24521120 CAACTTCAATGTGTCAGGGA 58 24517859 24517877 ATGGGATCAGCTCCATACG 59 Novel Rattus norvegicus 81 AABR07007715.1 ENSRNOG00000061142 ENSRNOT00000081057 2 1 1 80 2 25331412 25331430 ATAGCAGCAGATGGGAAGG 59 25331474 25343914 CTTGTGAGCATCTCAACCG 59 Novel Rattus norvegicus 81 AABR07007717.2 ENSRNOG00000057200 ENSRNOT00000089946 2 1 1 80 2 25547333 25547354 GATCAGAGAAACACTACTGAGG 58 25546607 25547292 TGTGCAGTTCAACTGTAGC 58 Novel Rattus norvegicus 81 AC091481.2 ENSRNOG00000061402 ENSRNOT00000092217 3 1 1 84 7 107865128 107866246 CCTCAACTGATACCAAAGATGG 59 107866291 107866309 GAGACAACCGATGTCAGGT 59 Novel Rattus norvegicus 81 AABR07007765.1 ENSRNOG00000060072 ENSRNOT00000092049 3 1 1 80 2 27571275 27571296 AGTGATGAAACAGTGATTGAGG 59 27571336 27574479 ACTCAAGAACCTTCTCCAGG 59 Novel Rattus norvegicus 81 AABR07041778.3 ENSRNOG00000058144 ENSRNOT00000081630 1 1 1 80 X 139484246 139486452 TGGTTACATTTCAGAGTACCTG 58 139486493 139486511 TACTGACCATCAAGCTTGC 58 Novel Rattus norvegicus 81 AABR07042301.1 ENSRNOG00000061805 ENSRNOT00000090347 1 1 1 81 X 152194208 152194227 ACATTATCAGAGCAGCAGAG 58 152194271 152195079 ACCAGTAACCTAGACTGCT 57 Novel Rattus norvegicus 81 AABR07070246.1 ENSRNOG00000060961 ENSRNOT00000091928 1 1 1 91 8 61435411 61435429 CTTGAGAAGCACTCATGGG 58 61433598 61435356 ATACAAGAGGCTCCAGACC 59 Novel Rattus norvegicus 81 AABR07007802.1 ENSRNOG00000055452 ENSRNOT00000089101 2 1 1 99 2 28881948 28881967 AAACGCTCATGTACATGGGA 60 28879759 28881891 CCTTCATATCTGAAGGAAGATGAC 59 Novel Rattus norvegicus 81 AC107527.2 ENSRNOG00000061335 ENSRNOT00000092047 2 1 1 80 7 123500553 123500571 GTCCTACCCAAGCTGTCTC 60 123494645 123500515 TATTATAGTCTCCGAGTTTCCTCAG 60 Novel Rattus norvegicus 81 AABR07042454.2 ENSRNOG00000052233 ENSRNOT00000079720 3 1 1 109 X 157347237 157347256 AAACAAGGTCTGAAGTGCTC 59 157347328 157353349 CACTGATGAAGGCAAGCTG 59 Novel Rattus norvegicus 81 AABR07027910.1 ENSRNOG00000053712 ENSRNOT00000080015 3 1 1 80 17 48644944 48644963 CTCGTAGCTGACTCTTTGTC 58 48645004 48645130 GATATTCTCCTCGTCAACCAG 58 Novel Rattus norvegicus 81 AC141997.1 ENSRNOG00000059136 ENSRNOT00000083119 2 1 1 97 7 126702253 126702271 TTCTCAGGACCAAGGAGGA 60 126702332 126702506 GTGTCCAGTCTTCCTGGAG 59 Novel Rattus norvegicus 81 AABR07070345.1 ENSRNOG00000052283 ENSRNOT00000091522 1 1 1 122 8 66424500 66436758 CTATTTAAGGAGAATGTCTCGTGG 59 66424401 66424419 TAGTGAGGCTCTAGGGCTC 60 Novel Rattus norvegicus 81 AABR07058647.1 ENSRNOG00000054074 ENSRNOT00000081985 2 1 1 82 7 129595024 129595042 TGAAGAGACCTGTTGGAGC 59 129587199 129594978 CATAGCACAGGTGCTTGTC 59 Novel Rattus norvegicus 81 AABR07070355.1 ENSRNOG00000052489 ENSRNOT00000088648 3 1 1 60 8 66894492 66894510 GCTGAAATCAACAGCCCAG 60 66893353 66894468 AACTAGCAGGAGGCTTCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07044418.1 ENSRNOG00000058447 ENSRNOT00000082193 3 1 1 102 20 5316902 5316920 TTTAGGATACCCAGGCCCT 60 5316081 5316099 TTTGAATCCAGGAAAGCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028076.1 ENSRNOG00000058667 ENSRNOT00000087867 3 1 1 92 17 55966250 55966271 CAGTCTGTGTATCTGTGTAGAG 58 55973725 55973744 GATTATGTCATTGCCAGCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 1 1 1 74 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56876317 56879351 ATCAAAGGTGAGAAGCCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059004.1 ENSRNOG00000051731 ENSRNOT00000085430 2 1 1 80 4 860285 860303 CAGTTTGACAAGCCTGGTG 59 860344 865283 GTCATCTTCAAGTTCACTGTCC 59 Novel Rattus norvegicus 81 AABR07070587.1 ENSRNOG00000060351 ENSRNOT00000091525 2 1 1 61 8 76103052 76104211 TTGATGAAGCTCGTGAGAG 57 76103009 76103027 CATTCTGTGGTGTGCAGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 2 1 1 63 4 16953756 16953776 AGTTGAAATTCTCCAGTGCAG 59 16953313 16953734 ATCTGGTAAATGATCTGGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089552 1 1 2 80 8 82418052 82419539 GCCCAGATTTGATCAAGATACAG 60 82419579 82419597 TCTGGTTCTTCCTCTGCAG 59 Novel Rattus norvegicus 81 AC112030.1 ENSRNOG00000051486 ENSRNOT00000081349 2 1 1 68 4 26533360 26548462 TCTCTACAAACACAGAGAAGAC 58 26548491 26548509 AGTTTACTTCGATGCACCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07008030.1 ENSRNOG00000051672 ENSRNOT00000077151 2 1 1 116 2 39619357 39629035 GATCAAAGATGCTGATCCAAGAG 60 39629111 39629129 ATGAGCTTTGGTCCCAGAG 59 Novel Rattus norvegicus 81 AABR07070775.1 ENSRNOG00000060174 ENSRNOT00000091831 3 1 1 81 8 84144844 84144862 TACAGTGTTGTGAGTCGTC 57 84143189 84144799 ACCAGAATCCTGAACTCCT 58 Novel Rattus norvegicus 81 AABR07028469.1 ENSRNOG00000051695 ENSRNOT00000090314 2 1 1 83 17 71459699 71459717 GGACCGGATGATACTTGGG 60 71457047 71459652 GGATGTTTCACCTTGCAGG 59 Novel Rattus norvegicus 81 AABR07008099.2 ENSRNOG00000058955 ENSRNOT00000077179 3 1 1 117 2 42878783 42878803 TGTCTTATTTGTCTTCCAGCC 58 42877541 42878706 GATAACAAGATGAGCACAGGA 58 Novel Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000084250 1 1 2 80 2 43405530 43406582 CTCAGATGGGTCCTGAGAG 59 43406624 43406644 TTTCCTTCTTCCTCAAGTCTG 58 Novel Rattus norvegicus 81 AABR07044807.1 ENSRNOG00000060396 ENSRNOT00000077552 1 1 1 80 20 21497533 21497551 GTCTTAGGAGTGAAAGCGT 57 21497287 21497490 GCAATAAATGCCTAAGCCTC 57 Novel Rattus norvegicus 81 AABR07044820.1 ENSRNOG00000054712 ENSRNOT00000078940 1 1 1 83 20 22265149 22274436 CTGTTACAGGTCTATCTACAAACC 59 22274478 22274496 TTCCTTTCCCAAAGGTGGA 59 Novel Rattus norvegicus 81 AABR07059875.3 ENSRNOG00000054870 ENSRNOT00000089845 1 1 1 80 4 39642545 39643152 CAAGGTGTGAAACATTGGTC 58 39642484 39642504 GCTTGCACTGACAAATATCTG 58 Novel Rattus norvegicus 81 AABR07071198.1 ENSRNOG00000053034 ENSRNOT00000091570 3 1 1 80 8 104359916 104362426 CCAGGAAGTCAGGTAAACTG 58 104359855 104359876 TCCAAATAGATCTGAAGGTGTC 58 Novel Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 1 1 1 61 17 86211392 86214344 GAAAGAGTGTTTGAAGGTCTTCC 60 86211353 86211371 ATTTGTGGATCTGCACTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028792.1 ENSRNOG00000054565 ENSRNOT00000088124 1 1 1 91 17 86511676 86519500 GGTCAAAGCAAGGTATTTCCT 59 86519553 86519571 GAAGTGGTCAGGCAAACAG 59 Novel Rattus norvegicus 81 AABR07008256.1 ENSRNOG00000052551 ENSRNOT00000077833 2 1 1 96 2 49790316 49790335 CCGAATCAACTGTACCTCTC 58 49790394 49790769 CTCCAGATGAAAGCACAGG 58 Novel Rattus norvegicus 81 AABR07008256.2 ENSRNOG00000056804 ENSRNOT00000083603 2 1 1 85 2 49799547 49799565 AGGAAGCACAGATCAAGCA 59 49799614 49801778 CAGTTGAGAGCCCTGAGAG 60 Novel Rattus norvegicus 81 AABR07008256.2 ENSRNOG00000056804 ENSRNOT00000083603 3 1 1 85 2 49799614 49801778 CTCTCAGGGCTCTCAACTG 60 49801825 49801845 TCTTACTTTAATCGCTGGCCA 60 Novel Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 3 1 1 68 17 89510901 89511666 TTACAGGAAGAAGCTGCCTC 60 89510852 89510875 CTCCATCGACATGATATAATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044980.1 ENSRNOG00000061835 ENSRNOT00000091080 3 1 1 83 20 30108187 30111690 CAATGCCACGGATCAAGAC 59 30108122 30108140 TCCATGTCTTGTACGTCCG 60 Novel Rattus norvegicus 81 AABR07008309.1 ENSRNOG00000052649 ENSRNOT00000083729 3 1 1 87 2 52783572 52785021 AAGTCTCCAAGCAGAGACC 59 52785071 52785090 CAAGATGTCCCTTCTGAACG 59 Novel Rattus norvegicus 81 AABR07060133.1 ENSRNOG00000054990 ENSRNOT00000090651 2 1 1 80 4 58408968 58420819 CTCCAAAGAGGTGTAATGCA 58 58408907 58408925 AAGTCTGATTTGCCAACCT 57 Novel Rattus norvegicus 81 AABR07045416.1 ENSRNOG00000060212 ENSRNOT00000078817 2 1 1 84 20 46936886 46936904 GATGAGGACAAGAAGCTGG 58 46936952 46937415 CCTATGGAGCTAGCAAACG 58 Novel Rattus norvegicus 81 AABR07060519.1 ENSRNOG00000059013 ENSRNOT00000086066 2 1 1 114 4 77415653 77446384 GAGAAGGCAGACAATGAGG 58 77415557 77415576 GTTTCTTCCTCCATCCACAG 58 Novel Rattus norvegicus 81 AC123500.2 ENSRNOG00000053935 ENSRNOT00000087266 1 1 1 96 19 41928216 41928234 TACAGAGGAGGTAACTGGC 58 41919583 41928159 CGAAGGGTATAGACTGATTCAG 58 Novel Rattus norvegicus 81 AABR07008661.1 ENSRNOG00000051543 ENSRNOT00000088420 2 1 1 60 2 69035914 69035932 CTTCCCATCTCAGCTCACC 60 69038682 69038701 AGAAACTGAGGATCCATGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043928.2 ENSRNOG00000058892 ENSRNOT00000079103 2 1 1 82 19 48211991 48212009 TCTCAAGGAGGGACTTCTC 58 48211737 48211948 CTTCATAGTCATTCAACATCCC 57 Novel Rattus norvegicus 81 AABR07058672.1 ENSRNOG00000052733 ENSRNOT00000083253 1 1 1 81 7 131193127 131193148 GAAACCATTATTGGAGTTCAGC 58 131193189 131200729 AGCTCCCTTCAAATTCTGTC 58 Novel Rattus norvegicus 81 AABR07008844.1 ENSRNOG00000061700 ENSRNOT00000079902 2 1 1 131 2 76366176 76366197 ACAGAGAATCTGAACTACTAGC 57 76364932 76366084 AGATCCTTGGCACTTTCTG 57 Novel Rattus norvegicus 81 AABR07008878.1 ENSRNOG00000051488 ENSRNOT00000080367 1 1 1 80 2 77113593 77113612 TAGTAGACTCAGAAGGCTGC 59 77113655 77161525 TCCAAGGTTGGTGGAACTC 60 Novel Rattus norvegicus 81 AABR07071659.3 ENSRNOG00000059340 ENSRNOT00000087790 3 1 1 80 8 126258529 126258549 ATATTAAGATGCCTGGGTGCA 60 126252845 126258488 TTTCTCCTTCCGTACTGAGG 59 Novel Rattus norvegicus 81 AABR07058723.1 ENSRNOG00000060824 ENSRNOT00000090216 1 1 1 162 7 135090436 135091626 GTCTGCCAGAGGTATCAGG 59 135091751 135091770 TCTCATTGTCCCTGAGAGTG 59 Novel Rattus norvegicus 81 AABR07071745.1 ENSRNOG00000059812 ENSRNOT00000085862 3 1 1 73 8 128885475 128885493 ATGGATGAATGGATGCGTG 58 128884847 128884868 AGAAGGACAAATAAGGGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071762.1 ENSRNOG00000055816 ENSRNOT00000082878 1 1 1 67 8 130139117 130145655 CTTCTATTGTACATAAAGGCTGGTG 60 130145680 130145698 TTTCATCAGGGCTACCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07071779.2 ENSRNOG00000061384 ENSRNOT00000080643 3 1 1 80 8 130938918 130941303 TTCTCAGATAGCTGCAGATCTC 60 130938859 130938877 GTTATCATCTTCAGCGGCC 59 Novel Rattus norvegicus 81 AABR07071813.1 ENSRNOG00000052222 ENSRNOT00000083653 2 1 1 143 8 131955609 131955628 ATTATCAGGACCTGCCAAGG 60 131956557 131956575 CAGACATTCCTAATGGGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071817.1 ENSRNOG00000051893 ENSRNOT00000089025 1 1 1 60 8 132405846 132405864 GGATGAAGCCCTGAGTCTG 60 132402862 132402881 CTGCGTTAGTCTAGAATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044167.1 ENSRNOG00000051801 ENSRNOT00000091145 2 1 1 60 19 60942738 60942757 TTGCACAGTCTCTTCTCTGG 60 60960580 60960601 CTTTATCCATGAGTGACCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 3 1 1 66 2 87734876 87734894 CAATAAGGAAACCTGCAGC 57 87734924 87785150 TAGTTGAGTTGCAGAAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009428.1 ENSRNOG00000055685 ENSRNOT00000077090 2 1 1 119 2 97674520 97674538 GGATTCATCTTCCAGCCAG 58 97672699 97672718 CGACAATGATGGTGGTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007093.1 ENSRNOG00000052475 ENSRNOT00000081218 1 1 1 80 1 280957826 280957845 AGCCAGAATTTCAGGAAACC 59 280943302 280957785 TCTCTTCAAACTCGAGCTAGG 59 Novel Rattus norvegicus 81 AABR07009599.1 ENSRNOG00000051894 ENSRNOT00000084565 1 1 1 88 2 105399947 105400196 TTTGCTTGTTGGGAAATCCT 58 105400247 105400265 TACAGATCCAGCTCAGTGC 59 Novel Rattus norvegicus 81 AABR07009600.1 ENSRNOG00000056127 ENSRNOT00000086516 1 1 1 80 2 105476122 105476145 CCCTAATCTCTTCAATTCCATCAG 59 105475789 105476089 GACAGCATATCCTTATTGTATAGCC 59 Novel Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 3 1 1 60 2 128381478 128381907 AGCCCTCCTATACAGTTGC 59 128381931 128381949 CCCTGATCTAGGACAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010358.1 ENSRNOG00000059009 ENSRNOT00000084228 1 1 1 80 2 133108813 133112207 GGAAGAATTTCCTACAGGTTCAG 59 133112246 133112265 CGTAGTCGATTTGGAGACAG 58 Novel Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 2 1 1 91 2 150686688 150686706 GACATCTGAAGGCAAAGGG 59 150686757 150689251 TCTTTCAGATTAGACCATGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011013.1 ENSRNOG00000054340 ENSRNOT00000087243 1 1 1 80 2 156674899 156674919 GAAGATGCCTTGGATGATCAG 59 156623238 156674857 CTTGTCTGACCAACCTCCT 59 Novel Rattus norvegicus 81 AABR07012023.1 ENSRNOG00000057849 ENSRNOT00000087041 1 1 1 80 2 182717162 182717182 TTTGATCGACTCTTCTCTGCA 60 182713253 182717124 ATCTTATAGCAGCACCTACTACC 59 Novel Rattus norvegicus 81 AABR07072759.2 ENSRNOG00000055468 ENSRNOT00000090513 2 1 1 60 2 193771845 193771863 TACCTTCCTGTCACAGTGG 59 193769190 193769210 GTATCAGCAATTCGTTCCTCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012640.1 ENSRNOG00000051856 ENSRNOT00000080205 1 1 1 82 2 201019113 201019131 AGAGGAAAGAGTCCACAGG 58 201019176 201022086 GGCAAAGAGCTTATCAAACG 58 Novel Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 2 1 1 61 14 3792324 3792942 TAACACTTGAGCAACGGGA 59 3792967 3792985 CTCCGCAACATATAAGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07014205.1 ENSRNOG00000053826 ENSRNOT00000084893 3 1 1 80 14 5495883 5507619 GTGCAAAGAATACAAGCAAGAC 59 5507659 5507678 TGACTATTCCGGTCAACTGG 60 Novel Rattus norvegicus 81 AABR07014272.1 ENSRNOG00000051753 ENSRNOT00000077352 1 1 1 80 14 6556737 6556805 CATGGTATACATGCCACGG 59 6556847 6556867 GTGATAGGTGCATACTCTGAC 58 Novel Rattus norvegicus 81 AABR07072374.1 ENSRNOG00000051972 ENSRNOT00000083647 3 1 1 62 14 11490455 11490476 TGTTAGAATTAAGCAGTGGGTC 59 11488306 11490432 TCTGACTCAGCACAACCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 1 2 2 92 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040925 204040943 CTTCATCCAATGCAGAGGC 59 Novel Rattus norvegicus 81 AABR07012752.1 ENSRNOG00000052852 ENSRNOT00000079480 1 1 1 90 2 205686939 205686958 CTGGAAGAGTAACAGTTGCT 58 205687011 205689123 GTTGCATAGAGGAAGCCTG 58 Novel Rattus norvegicus 81 AABR07013157.1 ENSRNOG00000051962 ENSRNOT00000080771 2 1 1 81 2 225171038 225171660 TTTGTCATCAGTTCTCTTCCTG 58 225170978 225170997 CAGACCTGATTGATGATGGG 58 Novel Rattus norvegicus 81 AABR07013167.1 ENSRNOG00000060865 ENSRNOT00000083669 2 1 1 98 2 225932276 225937085 CTGAGATGCTACAAGGTGC 58 225932196 225932214 AGCTTGACCAGAATCCTCC 59 Novel Rattus norvegicus 81 AABR07013250.1 ENSRNOG00000053168 ENSRNOT00000088970 2 1 1 80 2 230477282 230477300 CTGACACCATGGATGAGCT 60 230477338 230478421 CCATATGTTCATAGGATTTCTGAGC 60 Novel Rattus norvegicus 81 AABR07013410.2 ENSRNOG00000055227 ENSRNOT00000084227 2 1 1 80 2 236005031 236005657 AGGAAAGTAGAAGGGCAGG 59 236005701 236005719 TCCATCCTCGTCTCATCCT 60 Novel Rattus norvegicus 81 AABR07013558.1 ENSRNOG00000051702 ENSRNOT00000091469 1 1 1 80 2 244026608 244034348 AAATTACAAGGTCCCACCC 57 244026546 244026565 CCTCCTCTGTTCATTCACTC 58 Novel Rattus norvegicus 81 AABR07013686.1 ENSRNOG00000055290 ENSRNOT00000087168 2 1 1 80 2 250352367 250352386 AATTAAACGTGCACATGTGG 58 250349591 250352328 CGTACAGGACTGGATATTATGTG 59 Novel Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 2 1 1 60 2 115231955 115231974 CCCTCTTCCTTCTGTTCCTG 60 115231911 115231929 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 1 1 1 142 2 157854847 157854865 CTTCTGATTCGCAAGCTCC 59 157854988 157855007 TGGATAGAACACAGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076775 1 1 4 80 7 115870359 115873154 GAAACACTCCAGGCTATGC 59 115870297 115870316 GGATGATTGGCCTTTCTACG 59 Novel Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 2 1 1 61 18 25364190 25364211 TGGATAGTGTAACTGATTCCCA 59 25364147 25364165 TTTCCTGTAGGAAGGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059150 ENSRNOT00000077208 2 1 1 60 17 82845430 82845450 ATACAGAGAAGATTAGCGTGG 57 82845471 82845490 GGAAAGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000060577 ENSRNOT00000084254 1 1 1 60 8 70702118 70702139 CAGATCGTATAAATCTTTCGCC 58 70702079 70702098 ACTCAGAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000056002 ENSRNOT00000086711 2 1 1 65 8 96169259 96169280 TGATGATCCTATCCCGAATCTG 59 96169215 96169233 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063649.2 ENSRNOG00000056890 ENSRNOT00000078333 2 1 1 83 6 39517612 39517631 CTACTGTTCAGGAAGAGCTG 58 39517677 39517697 ACTTTGTGCTCGATTGTCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058771 ENSRNOT00000087786 3 1 1 60 4 107754708 107754730 CGATACAGAGAAGATTAGCATGG 59 107754670 107754688 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0825.2 ENSRNOG00000051299 ENSRNOT00000076838 2 1 1 60 5 78365924 78365945 GAGAAACTCATTCTTCCCATCC 59 78365885 78365904 CCCATGCAGAACAATCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058274 ENSRNOT00000083845 2 1 1 60 4 121506918 121506936 ATCTGAGTAGCTGCACTCC 59 121506957 121506978 GCAAGCTTCCTTCTTCTATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000076975,ENSRNOT00000080556 2 2 2 80 13 49005516 49006089 CCAATACTACCTTCCACCAG 57 49006131 49006150 CATGACAGATTCACAGGGAG 58 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 2 2 2 80 14 83884380 83885384 AAAGTGAACTACGTCCCGT 59 83884318 83884337 GGAGTAGCAGAAGGAAGGTC 60 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 3 2 2 81 14 83884379 83885383 AAGTGAACTACGTCCCGTG 60 83884316 83884335 ATGGAGTAGCAGAAGGAAGG 59 Novel Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051 1 1 2 80 15 36897696 36897714 CATTCCAGTTCTGCCTTCC 59 36897757 36898031 TAGTTGGGATGAATCCAGGG 59 Novel Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 3 1 1 60 14 99672223 99672241 CAACATCTGCTGTCACCTG 59 99672267 99672285 TGAGATTCCACCTCACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376 3 1 2 140 4 114818850 114819358 ATCCCATCTGCTTCGAGAG 59 114818587 114818605 ATGAGGACAGTCCAAAGCA 59 Novel Rattus norvegicus 81 AABR07056131.1 ENSRNOG00000051596 ENSRNOT00000088383 3 1 1 122 7 20462760 20462778 TTCCTACTCACCTGTCTGG 58 20462861 20467410 GGAAGGAAGATTTCTTGATCCA 58 Novel Rattus norvegicus 81 AABR07005040.1 ENSRNOG00000054914 ENSRNOT00000078844 1 1 1 60 1 177529439 177529458 TCCATGTTTCTCTTGAGGAC 57 177529481 177529499 TGTAAGGACACAGCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000056307 ENSRNOT00000081069 3 1 1 60 12 28114694 28114713 CTAAAGGTTAAACAGGGCCT 58 28114653 28114672 TAGTTTACCATGCAGTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564 1 1 2 81 4 29534763 29536007 CTTACTGGGAACTTTGCTGC 60 29538802 29538820 CTCTGGGTCCCATTAAGCC 60 Novel Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 1 1 1 60 19 37021479 37021500 CCAAGTACACATGATTTCAGCT 59 37021280 37021298 GGGTTTGTTGCAGTGATCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016556.1 ENSRNOG00000036373 ENSRNOT00000054492 1 1 1 62 14 103358312 103358331 AGTAGCTGAATCAGAGTGCT 59 103358269 103358287 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000084723 1 1 3 96 20 3367401 3368495 CTTTACCGGACCTTTGATGC 59 3368637 3368655 GTGAGTGTGAAGGCATCAG 59 Novel Rattus norvegicus 81 AABR07019888.1 ENSRNOG00000053960 ENSRNOT00000090887 3 1 1 60 13 6055528 6055548 TCCATCATGTTCTAGTCACAC 58 6055488 6055510 ACTAGCATCTCTACTTCTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124205.2 ENSRNOG00000059975 ENSRNOT00000085007 3 1 1 81 5 140275568 140459759 TGTGACACAGGATGTGGAG 59 140275505 140275525 TCTCAACTCAGGATCCTTAGC 59 Novel Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 3 1 1 60 12 2262067 2262088 AAACTAGAAACCTGTAGTGGCT 60 2262027 2262047 CCATGAATCTAAGTGCACACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 1 1 1 63 8 13223532 13223552 ACTAAGTTGCTTCTGATGTCG 59 13223581 13223599 TCCTGCTCATCATGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 3 1 1 97 X 147586617 147586635 TCTACAGACCAAACCAGCT 58 147586536 147586555 ATTCACGAATGTATTCGGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 2 1 1 95 1 142027711 142027730 TGTAGTGATCAATGTCAGCC 58 142027790 142027808 TCAACACTCCAGGTAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 2 1 3 120 X 73496700 73496718 CAGTATTGAAGCAGAGCGT 58 73501469 73501487 AATTCTTCAGGGTCCCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047744.2 ENSRNOG00000060249 ENSRNOT00000036616 3 1 1 66 5 45556455 45556476 CCTAGCCATTCTGACTTGTG 58 45556408 45556427 TTAGTCATCAGGGAAAGGCA 59 Novel DesignRelaxed Rattus norvegicus 81 7SK ENSRNOG00000052996 ENSRNOT00000091162 3 1 1 60 13 113621659 113621678 GTTGATCCGTCTGATCTGAG 58 113621698 113621719 ACATATGGAATGAAGAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076399 1 1 2 146 1 31264856 31264874 AGAAGATCACGCATACCGG 60 31265858 31272602 CTCATTCACCTCTTTCTGACG 59 Novel InUTR Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 1 2 3 80 X 74014954 74014977 AGCATTCCTATCTAGAGAAGACTG 59 74012049 74014915 GACTGGCTTGCTGTATCCA 60 Novel Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 3 1 1 65 3 154986149 154986169 TTGATGATCGTCTGGTTACAC 58 154988844 154988865 GCATAAATCCGAATCATCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 2 1 1 60 1 99888421 99888441 TTCATCTTCAGTTTCCTCAGC 58 99889271 99889289 GAAAGGCGTACTGTAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 3 3 4 104 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873734 134878984 TCAAGCTGGGTGTAAATGC 59 Novel Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 2 1 1 60 14 103887430 103887450 TTTCTCCTCTGGATCCTTCAG 59 103887142 103887163 GAGCCAAGGATATTCAAACCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 2 1 1 74 14 112997162 112997183 GGTGGATGTCATGTTACAATGG 60 112969509 112969528 TCATCGTGCACATCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 3 1 1 64 4 181677063 181677083 TCTCCAAGAGTAAACACCCAG 60 181676537 181676555 TCCTGCCAGTCTCATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 3 1 1 60 15 52501665 52501684 CTGTTGAGCCATGTAAAGGG 59 52502255 52502273 CCATCATAACTGCCTGGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 1 2 2 80 1 88265241 88266843 TTTAAGGAAAGCAAAGGCTGG 60 88266880 88266903 TGACTCTTCTTCATAGAGTTCCTG 60 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 2 1 1 104 15 103583563 103583581 CATGTTGGACATACTCGGC 59 103576093 103576112 GGCGAGTTCTGTGTATAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 1 1 1 60 6 110258847 110258866 ATGGTTGGAGAACATTCTGG 58 110258294 110258313 GAAGGACAGCATCAGTTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058 3 1 2 95 6 119129181 119137131 GTTTCTGTGATTGCTGTCGG 60 119137189 119137207 ATTGGAGTGAGGGAAAGGC 60 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 3 1 1 60 3 62622694 62622714 CTGATGCTTCTTCATGAGACG 59 62621876 62621895 CTGAACACTTCGTTCTTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 1 2 2 86 6 133668571 133676832 GGAATAGGCCAACATCGTC 58 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 3 2 3 80 12 3308126 3308146 AAACTCTTCTGGCAAATCACC 59 3308187 3319648 CCTCTTGATGCATTATCGCA 59 Novel Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 1 1 1 83 13 105919491 105919509 AGACCCTATGCAGAAAGCC 60 105918507 105918525 CTATGGTAGCAGCATCGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 3 1 1 78 12 6233476 6233494 GCAGGGAACAGAAACAGAG 59 6233795 6233814 ACAGTTATCAGCTCCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 3 1 1 61 1 153456476 153456499 CTCAAGTGGAATTAGAAATCAGGG 60 153457374 153457392 GCCAATTCAACCAAAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 2 1 1 61 16 18598121 18598139 ACACAGTCATCTGCAGAGG 59 18601922 18601942 CCATCAAACTTTGCCTTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 2 2 3 68 12 22360250 22360268 CCAGAATTGAGTGTGGCTG 59 22360716 22360734 TAGGAATCCAGGTCTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000092040 1 1 2 117 12 22370364 22370382 CAGAGATGTACTTGCACGG 58 22370463 22371365 ACTGCACAGTGATTTCAGC 59 Novel Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 3 1 1 67 12 28025307 28025325 CCCTGTGTTCAGAGATGGG 60 28024964 28024984 AAAGATTTAGAAGGACTGCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 3 2 2 83 1 200364477 200364498 TCTGTAAAGTCACCAAGATTGC 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000079434 1 1 2 80 1 200369743 200369763 CCTATGACCTAACCAACTCAG 58 200369805 200369927 GATCATCAACCTTCTGCCA 58 Novel Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 3 1 1 60 9 49134052 49134071 CACAACAGGATCATGAAGGA 58 49135000 49135020 AGATTAAGACTGTCACGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 3 1 1 79 3 160964906 160964924 TTAACAGTTCCCTGCACAC 58 160972984 160973002 TTGACTGCTGAGCCATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 3 1 1 73 X 5824567 5824585 GAAACATGCCTGCCTTTCC 60 5789722 5789740 ATTTGCTCCATTTGCTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 1 1 1 60 17 5877410 5877431 AAACACTATCTGTGAGATCTGC 58 5889672 5889690 ATTCAGACAACGCAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 1 1 1 60 7 34176255 34176273 CTTCCTGCAGGGATATCCT 58 34177880 34177900 TTCTCAGCTTCCTTGTTAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 3 1 1 68 7 50073490 50073508 TATATGCTGCCCTGAGTGG 59 50072561 50072582 AACGTAATAATGCTCAGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 3 1 1 60 19 20784061 20784079 ATACTACTGCTGGCTGCTG 60 20774715 20774734 CAGGAAGCTACATCCATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524 3 1 2 90 7 75855166 75855185 TAATGGTGAGGTAGTGACCC 59 75855237 75858274 CTGACAGAGCTTCTGATGTC 58 Novel Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 2 1 1 78 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56879336 56879355 TGTGATCAAAGGTGAGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 2 2 2 128 20 45683292 45684506 CTCCCACGTATCCAGATACG 60 45684597 45684615 CTTACCCAGACACCAGGTG 60 Novel Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 2 1 1 206 8 124166660 124166678 CTCGTTCGGTTCATCTCCA 60 124167025 124167043 GATCACTTACCCAGCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 1 1 1 156 2 139942286 139942304 TAGCTCCAGGTTTGCTGAG 59 139945276 139945294 ATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 3 1 1 60 2 154909932 154909951 ATTGGCCTATGGGAAATGCT 60 154911321 154911341 TACCACCAAATGGTCTCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 1 1 1 102 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143961 225143979 TGGGACATGGCAAGTAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd2 ENSRNOG00000031033 ENSRNOT00000040993 1 1 1 60 MT 4368 4389 CATTCTCGCAATTTCATCAGTC 59 4409 4428 TGTTTGGGTCTGGTTAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif2a ENSRNOG00000014000 ENSRNOT00000019189 3 1 1 80 2 38159514 38160582 TTAGCACTCAAGGAGTGCA 59 38159452 38159472 CACCTGAGTGAGTTTACTTGC 59 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375,ENSRNOT00000031743 1 2 2 80 2 186428142 186428160 AGACCCACTACAACTGCAC 60 186426927 186428098 GTAACACCTCTCGCTCCTC 60 NA Rattus norvegicus 81 Rs1 ENSRNOG00000030434 ENSRNOT00000040912 3 1 1 80 X 35752573 35752594 TGCAATATAGGACTGATGAACG 59 35750094 35752533 AGTTTCCATAGAAGACCCGA 58 NA Rattus norvegicus 81 Tinf2 ENSRNOG00000020189 ENSRNOT00000027362 1 1 1 80 15 34361763 34362182 AAGAAACCAGTGCTATCCC 57 34361701 34361720 TTCTTCCTCATCAGAGTCCA 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000079802,ENSRNOT00000078824 2 2 5 60 X 22247174 22247192 GACAGGTCCAGACTCATGG 60 22249055 22249073 GAGTATGAGACGCTGTGGA 59 NA DesignNoJunction Rattus norvegicus 81 Lst1 ENSRNOG00000000855 ENSRNOT00000065940 3 1 1 80 20 5178026 5178350 ACTTGGCTACTAGAGAAACAG 57 5177966 5177984 GATGATGACAAGCAGGAGG 58 NA Rattus norvegicus 81 LOC100909993 ENSRNOG00000045993 ENSRNOT00000075059 2 1 1 60 2 115272323 115272342 AACACCCATGTACTTCTTCC 58 115272365 115272383 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000032601 3 1 2 81 15 36356082 36470691 TGTTAAAGCTGAAGAGTAAGGC 59 36356022 36356040 GGCTTCACTTTGAAGTTGC 58 NA Rattus norvegicus 81 Olr1139 ENSRNOG00000048018 ENSRNOT00000035560 3 1 1 60 8 19179717 19179736 ATGCTAGTGAACATCCAGAG 57 19179676 19179695 TCTGTGTAAGGCAATCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550734 ENSRNOG00000030296 ENSRNOT00000042885 2 1 1 60 8 104155490 104155508 AAGCGTAATGAGGATGAGG 57 104155448 104155466 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562683 ENSRNOG00000042967 ENSRNOT00000065810 3 1 1 83 11 33757998 33758017 AGAAAGCAGCTACTCTGAGC 60 33748099 33757952 CTGAAAGTACGCAGTCAGC 59 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 2 2 2 82 X 156326538 156327608 TTGAGCAGCATATGAAGAACAG 59 156327649 156327669 AGGAATACAGCCTTCCATCTC 59 NA Rattus norvegicus 81 Fgf9 ENSRNOG00000011471 ENSRNOT00000015367 3 1 1 83 15 38342017 38342041 CTGGATTTCACTTAGAAATCTTCCC 60 38342079 38352259 TAAATTCCAGAATGCCGAATCG 60 NA Rattus norvegicus 81 LOC100911145 ENSRNOG00000048134 ENSRNOT00000073467 1 1 1 80 11 46163696 46165974 TCTGACAAGCACAAAGAAGG 59 46166014 46166035 CAGGTAACTCCAAAGACAACAG 59 NA Rattus norvegicus 81 LOC100911145 ENSRNOG00000048134 ENSRNOT00000073467 3 1 1 80 11 46135790 46135811 TAATGTAGCAATCCAGTCAGTC 58 46135851 46135982 TCACTAGATCCTTTCTGCAC 57 NA Rattus norvegicus 81 Fam132a ENSRNOG00000019864 ENSRNOT00000027055 1 1 1 95 5 173393733 173394230 GATTCCAGGCTCCTACTACC 59 173394288 173394306 GGAAGATGGCAGAGACTGG 60 NA Rattus norvegicus 81 Scara3 ENSRNOG00000016177 ENSRNOT00000022020 3 1 1 85 15 42616903 42618117 ATCTTCAAGGACTGGACCC 59 42616836 42616854 GAGCTTCCTGATCTCTTGC 58 NA Rattus norvegicus 81 Bckdhb ENSRNOG00000009928 ENSRNOT00000013249 3 1 1 84 8 91509816 91509834 GTCACTCATGGTGCTACAG 58 91509882 91510128 CAGCTTCGTTGACAATCTG 57 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464,ENSRNOT00000091513 1 3 3 80 16 2168407 2171724 CTCCGTTCAGATGTCATCC 58 2166488 2166509 CTGAGAGTACATACTTGGAGTG 58 NA Rattus norvegicus 81 Ulk3 ENSRNOG00000038459 ENSRNOT00000025885 3 1 1 80 8 62369861 62369881 CTGAGATTGAGATCCTCAAGG 58 62369920 62370024 AGATATTGTCATTGTCCCACTG 58 NA Rattus norvegicus 81 Dusp14l1 ENSRNOG00000046368 ENSRNOT00000074141 3 1 1 60 2 140836475 140836495 AGCTGATAGACTATGAGAGCC 59 140836514 140836535 GGTGTCTGTACCATCTTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1239 ENSRNOG00000049421 ENSRNOT00000071100 2 1 1 60 8 42301808 42301829 TATGTATTGACTTCGATGGCCT 60 42301845 42301868 TATACATCAGTGGGTTACAGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcps ENSRNOG00000009993 ENSRNOT00000013763 3 1 1 80 8 36323961 36323982 AGATCACTTCGAGATCTCACTC 59 36322438 36323921 CTTCAGGATGGCTTCTTGTC 59 NA Rattus norvegicus 81 Srsf3 ENSRNOG00000000520 ENSRNOT00000000627 1 1 1 80 20 6291743 6291764 CTTTGCTTTCGTCGAATTTGAG 59 6291804 6293263 CAGCCACATAGTGTTCTTCC 59 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065,ENSRNOT00000035125 2 2 2 81 1 56163384 56163402 TAAGTGAACTGCAGCTGGA 59 56162282 56163340 TCATAGAAACCTGAGCTGGG 59 NA Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528 2 1 2 82 1 21853411 21853429 GTGAAGCTGACCTAGAGGA 58 21852968 21852987 CTCAAACTTGACAGGCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07002418.1 ENSRNOG00000048238 ENSRNOT00000072649 1 1 1 80 1 73423036 73423167 TCCTGGCTTATCTCAAGCC 59 73423210 73423229 GGGTTCCAAAGATACAAGGG 58 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351,ENSRNOT00000070912 2 2 2 80 3 109871707 109871891 ACTTGCTGTAGGTTATGATGAG 58 109871932 109871950 TAGTCGTCATCCCTCTCAG 58 NA Rattus norvegicus 81 LOC100910174 ENSRNOG00000048934 ENSRNOT00000043157 3 1 1 60 1 22364792 22364810 TGGTGGTGATTTCAGTCCT 59 22364834 22364852 GCGATGAGGAAATTGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912106 ENSRNOG00000050827 ENSRNOT00000074804 3 1 1 93 1 91962678 91962697 CTTAGCACTTGTGAAGCCTG 59 91961536 91962622 TTCTGACACCTTCCCACTC 59 NA Rattus norvegicus 81 Olr1329 ENSRNOG00000060221 ENSRNOT00000078003 3 1 1 60 8 43782124 43782146 CATAGATTTCTGCTACTCCTCTG 58 43782165 43782184 CTCCGATACAAAGTTCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scube3 ENSRNOG00000000500 ENSRNOT00000000593 1 1 1 80 20 7742944 7742963 ATCAACTTCAAGACCAGCGA 60 7743005 7743123 CTGCTCATAGTCCTCATCGT 59 NA Rattus norvegicus 81 Ccdc32 ENSRNOG00000010472 ENSRNOT00000013963 2 1 1 81 3 110821164 110821182 ATGCTGGGATCGATTCCTC 59 110818213 110821119 TTCCAAGGTGCTCTCATCG 60 NA Rattus norvegicus 81 Rorc ENSRNOG00000020836 ENSRNOT00000067042 1 1 1 80 2 195627275 195628416 CATGTCCAGAGATGCTGTC 58 195628460 195628478 AGTTGTTTCTGCACCTCTG 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775,ENSRNOT00000064593 2 2 6 81 1 76515641 76517006 CAAGTCAGGAACGAACTGG 59 76515578 76515596 GGGCATAGATTGGATCCAC 58 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300,ENSRNOT00000015784 1 2 2 80 1 161988703 161988723 TGGCTGAATTCTATATGGTCG 58 161988765 161995724 AGAGTCCTTCCATGACCTG 58 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777,ENSRNOT00000086721 3 2 2 80 X 29618572 29618590 ACAAGTGCAGTGAAAGAGC 59 29613979 29618529 GAGGAACACGAACATTCCAC 59 NA Rattus norvegicus 81 Ppapdc1a ENSRNOG00000020424 ENSRNOT00000027681 2 1 1 82 1 202481010 202490766 CTCATGTTTGCAATTTCCTTCC 59 202490808 202490827 ATTTCAGTCTTGTCTGTCCG 58 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474,ENSRNOT00000067506 2 2 2 80 4 179433003 179433335 CCATCAACCAGGAAAGTCG 59 179433379 179433397 TGGCGTACATCCTCTTCAG 59 NA Rattus norvegicus 81 Olr1309 ENSRNOG00000050335 ENSRNOT00000043206 3 1 1 60 8 43355331 43355350 CTTTCCAGGGATGTGTTGTC 59 43355373 43355391 AAGCACAATATGCAACCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770,ENSRNOT00000085527 3 2 2 80 5 136698970 136699097 GGACTCGGTACTCAGTTCTG 60 136699139 136699158 CTGCAGAATCCACTCATTCC 59 NA Rattus norvegicus 81 Tmem219 ENSRNOG00000020000 ENSRNOT00000027094 2 1 1 93 1 198333170 198333188 AACTTCGGAGGTGATCCAG 59 198328877 198333119 CCTCTTCTGGTATGTCTTTAAATCC 59 NA Rattus norvegicus 81 Nkx2-3 ENSRNOG00000016656 ENSRNOT00000054714 1 1 1 60 1 263367576 263367594 AAGGAGCAAGAAGAGGAGG 59 263369100 263369118 ACTTCTTCAACTGGCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 Olr263 ENSRNOG00000047215 ENSRNOT00000071859 2 1 1 60 1 172626019 172626038 ACATCCTCATCACCATCCTG 59 172626061 172626079 GTGGAGAAAGCCTTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.4 ENSRNOG00000051297 ENSRNOT00000076037 2 1 1 60 X 58556763 58556782 CTTCTGATTTGCAAGGTCCC 59 58556805 58556823 TTGAAGTCCTGAGCAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpy19l4 ENSRNOG00000025416 ENSRNOT00000037869 2 1 1 80 5 24523308 24523332 CCAGAGATCATTTACCATGTAATCC 60 24519444 24523273 CCAAATGAATTTCAAGCCTTCC 59 NA Rattus norvegicus 81 Sil1 ENSRNOG00000019826 ENSRNOT00000026895 2 1 1 80 18 28120736 28132901 GAGTACTATGTCCATCAGATGG 58 28120677 28120696 GTTGAGCCCATTAATCACCA 58 NA Rattus norvegicus 81 LOC690235 ENSRNOG00000024200 ENSRNOT00000033223 3 1 1 60 8 16485571 16485589 GCTCCCGTTTGATGATTCC 59 16485529 16485549 ATACTTCCCTGACACAACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000084171,ENSRNOT00000082017 2 2 3 60 6 2311498 2311518 GAGTTGTCTAAGACGCTTCTG 59 2311458 2311477 TGAAATTGCACTGATGAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a3 ENSRNOG00000036625 ENSRNOT00000028493 1 1 1 80 1 227981225 227982440 TTCCTCATCAAATGGCCTG 58 227981163 227981181 ATGACTGAGAGCGAAATGG 58 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000028731 1 1 2 80 1 222246314 222246332 GGAATGAAGTGAGGCATGG 59 222245177 222246271 AATTAGTAGGGACAGGCCTG 59 NA Rattus norvegicus 81 AABR07020847.1 ENSRNOG00000049403 ENSRNOT00000073921 3 1 1 83 13 43514571 43514589 TACATTAAGGCACTGGCAG 58 43494702 43514527 TTTCTTCAGATCATAGGCTGTC 58 NA Rattus norvegicus 81 LOC288978 ENSRNOG00000045570 ENSRNOT00000071437 1 1 1 80 13 36200024 36205223 CCACAAAGCAAAGACAAATGAG 59 36205264 36205282 TTCAGCGTTCTGTCTTCCT 59 NA Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000056515 2 1 2 88 1 98990677 99131473 TGAGACAGATATGGATCAGTGTG 60 98990611 98990629 AGCTCACAGATTTCCGGAG 60 NA Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000056515 3 1 2 89 1 98990677 99131473 TGAGACAGATATGGATCAGTGTG 60 98990610 98990628 AAGCTCACAGATTTCCGGA 59 NA Rattus norvegicus 81 B4galnt3 ENSRNOG00000010344 ENSRNOT00000036721 2 1 1 80 4 152755801 152755819 CAGGAAAGGAATGGACAGC 59 152754464 152755759 GAGAGGCTGATAAACTCACTG 58 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076,ENSRNOT00000023605 1 2 3 102 2 189437844 189437955 GTATGAAGAGGTGGCTCGT 59 189439296 189439314 CTCCTCCAGCTCAGAACAC 60 NA Rattus norvegicus 81 Rgs9bp ENSRNOG00000012877 ENSRNOT00000017172 3 1 1 64 1 91855901 91855920 CACTTAGTGCTTACTGTGGG 58 91855856 91855874 GTCTTCTGCAGTTCTTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrep ENSRNOG00000020467 ENSRNOT00000027739 2 1 1 80 18 26189840 26189859 TACCCAGAACTCTTGGTCTG 59 26185543 26189800 AAGTCTTCCCTTAGTAAGACCT 58 NA Rattus norvegicus 81 Them4 ENSRNOG00000020829 ENSRNOT00000028260 1 1 1 82 2 195565091 195569137 CAAACCCACTTTGTTGACTC 58 195569181 195569200 CCTTCTTCTAAGCTTCTGGT 57 NA Rattus norvegicus 81 Dync1i1 ENSRNOG00000009700 ENSRNOT00000013184 3 1 1 81 4 30868824 30891950 TCAGAACTTGGGAGAAGACTG 60 30891993 30892011 AGGATACCACCTCCCTAGG 59 NA Rattus norvegicus 81 Cnot11 ENSRNOG00000023220 ENSRNOT00000031352 2 1 1 80 9 46277525 46277544 TCACCGAGTATTTCTCGGTC 59 46277584 46279439 CAGCTGTAGTTAGTCGATTCAC 59 NA Rattus norvegicus 81 Taar8a ENSRNOG00000030414 ENSRNOT00000044098 1 1 1 60 1 22403708 22403726 CACTCTCCTGCCAATTTCC 59 22403666 22403684 AGATGCCCACCAAGAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cybb ENSRNOG00000003622 ENSRNOT00000038994 2 1 1 80 X 14578359 14580254 CTCCATCTTTGTCATTCTGGT 58 14580296 14580314 GGCTCATCGTCATAAACCT 57 NA Rattus norvegicus 81 Cyb561a3 ENSRNOG00000020702 ENSRNOT00000028094 3 1 1 81 1 226634143 226635814 GTTCTGAAGGAGTTCTTGATCAG 59 226635855 226635873 ACATTGATCCCAGGGATCC 59 NA InUTR Rattus norvegicus 81 AABR07044495.1 ENSRNOG00000048871 ENSRNOT00000074908 1 1 1 84 20 8183233 8183290 TGTTTGACAGATGCGTGTG 59 8183167 8183186 TTTGCCTTCACTTTCCTGTC 59 NA Rattus norvegicus 81 Ralb ENSRNOG00000002440 ENSRNOT00000003413 2 1 1 80 13 35510914 35510933 TCACTGTCCTTCACAAGGA 58 35510852 35510871 CGTCATACATGAACTGGAGC 59 NA Rattus norvegicus 81 AABR07070032.1 ENSRNOG00000034066 ENSRNOT00000044608 1 1 1 80 8 44992728 44993000 GATAAGAACCAGACTGCGG 58 44993044 44993062 GGTGATGATAGGGTTGCAG 58 NA Rattus norvegicus 81 Kctd18 ENSRNOG00000027091 ENSRNOT00000029879 2 1 1 167 9 64905114 64911595 ATCAGGTGATCTGACAGGAG 59 64865034 64865052 TATCTCGCATCTCCTCTGC 59 NA InUTR Rattus norvegicus 81 Mrgprb13 ENSRNOG00000049416 ENSRNOT00000072393 1 1 1 60 1 103630428 103630446 ACAATTCTCCTCCTGTCCT 58 103630386 103630407 CAACAAGTAAGCAAATGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2a1l ENSRNOG00000016703 ENSRNOT00000022380 3 1 1 80 6 12465576 12465594 ATGATGTCAGTGAGCAGGA 58 12465635 12468334 TCCGGTGAATCTTATCATACTG 58 NA Rattus norvegicus 81 Kcnrg ENSRNOG00000021831 ENSRNOT00000032514 3 1 1 80 15 41938383 41938401 ACCTTCTCACCATGACCTG 59 41938443 41941982 ATGGAAATGTACCTGACTCCA 59 NA Rattus norvegicus 81 Rn60_7_0716.1 ENSRNOG00000033952 ENSRNOT00000041958 2 1 1 60 7 71399089 71399109 GTGAAAGTGAAGAGAAACTGG 57 71399049 71399070 CACTCCTTTGAAGAAACTACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir30a ENSRNOG00000035646 ENSRNOT00000053769 1 1 1 60 9 29542637 29542657 AACTGTAAACATCCTCGACTG 58 29542679 29542697 AAACATCCGACTGAAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab9a ENSRNOG00000030443 ENSRNOT00000050018 1 1 1 146 X 29525348 29525366 GAATAGCTCCCAGGACGTC 60 29546243 29546261 CTCCACCATCTCCAAGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sema3c ENSRNOG00000006526 ENSRNOT00000009132 1 1 1 80 4 14324422 14324440 GAATGTGCTCCCAAGTCTC 58 14321179 14324379 CAGTTTAACCTCCTTCCTCC 58 NA Rattus norvegicus 81 Sema3c ENSRNOG00000006526 ENSRNOT00000009132 3 1 1 80 4 14324421 14324439 AATGTGCTCCCAAGTCTCC 60 14321178 14324379 TCAGTTTAACCTCCTTCCTCC 59 NA Rattus norvegicus 81 Vps45 ENSRNOG00000021173 ENSRNOT00000028751 3 1 1 80 2 198158940 198167480 CTCTTCAGAATGTGAAGAGACTC 59 198158882 198158902 GAGCATAAAGCATCACTAGGC 59 NA Rattus norvegicus 81 Arap1 ENSRNOG00000019555 ENSRNOT00000030037 1 1 1 80 1 166498781 166498805 GTCTTATATCTATCAGAAGCGATGG 59 166498841 166499116 GAGTAGGCATCCTTGTTACTG 58 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000025495 1 1 2 80 18 29191866 29191886 CCCTATCAAGGATACCCACAG 60 29191925 29232888 GTCTTCTACCACATACACTGTG 59 NA Rattus norvegicus 81 Mir377 ENSRNOG00000035610 ENSRNOT00000053733 1 1 1 72 6 133890701 133890719 GTTGCCCTTGGTGAATTCG 60 133890754 133890773 CAGGCTTTGATACTCAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0063.1 ENSRNOG00000048677 ENSRNOT00000071429 2 1 1 60 7 6157869 6157890 CTTGAAGATTTCATGCTCAGAC 58 6157911 6157929 CACTGCACAAACAATCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca2b ENSRNOG00000008979 ENSRNOT00000012062 3 1 1 80 5 138696607 138697546 GGGTGTCTACATCAAGTACC 57 138696546 138696565 ATCTGCTTCTCTTCCAACTC 57 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245,ENSRNOT00000085005 2 2 2 80 1 101505811 101505951 AGAGGAGCAGTATACACTCG 59 101505994 101506012 CACATCTGAATCGGAGCTG 58 NA Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000075883 3 1 2 85 7 115979241 115979261 CAGAATCCAAGGAAGAAAGCT 58 115978562 115979195 TGTGTTACAGCTGTCTACCT 58 NA Rattus norvegicus 81 Opn3 ENSRNOG00000003778 ENSRNOT00000005072 2 1 1 81 13 93719599 93746550 CCTCTTTGGGTTTGTTTCCA 59 93719537 93719555 GATCACTCTGGCATGTACC 58 NA Rattus norvegicus 81 Rn60_X_0612.1 ENSRNOG00000051281 ENSRNOT00000076333 3 1 1 60 X 61216246 61216264 AGCCTCTGTTTCTGACCAC 60 61216204 61216223 AGAAGCCTCAGCATACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564878 ENSRNOG00000049074 ENSRNOT00000059672 3 1 1 80 15 35131350 35132410 GAAGCTGGAGCAGTTAAAGAG 59 35131290 35131310 CTGAATAAACGCCATGTAGGG 59 NA Rattus norvegicus 81 Tmem154 ENSRNOG00000010866 ENSRNOT00000014433 3 1 1 80 2 183694540 183700009 CAAGCAGGATGATCTAGGAG 57 183700956 183700977 ATCTCTATTTCCATAACGGAGG 57 NA Rattus norvegicus 81 Neurod6 ENSRNOG00000026055 ENSRNOT00000016182 1 1 1 140 4 85915048 85915066 TCTAGAGGCTCCAGGAGAC 60 85913632 85913650 GACTCGTCAAACGGTAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lage3 ENSRNOG00000053456 ENSRNOT00000078304 3 1 1 82 X 156356044 156356062 TAGCTCCTGATGTCGAACC 59 156356108 156356490 GATCCAGTGTACCTCCAGC 60 NA Rattus norvegicus 81 Gdpd5 ENSRNOG00000036859 ENSRNOT00000055321 1 1 1 80 1 164409747 164410397 AGTGGTTCCTCAAGACTGAC 59 164410440 164410458 TGGACTGGTTCTCAACCTC 59 NA Rattus norvegicus 81 AABR07027615.1 ENSRNOG00000043237 ENSRNOT00000068163 2 1 1 80 17 39457828 39457846 ATGTATGGTGGAAGACGGT 58 39457887 39458028 GACAACAGGTTTATTCTTCTGC 58 NA Rattus norvegicus 81 Rell2 ENSRNOG00000019575 ENSRNOT00000026526 3 1 1 89 18 31097137 31097401 TTCTCAGTGGGCAGATTCC 59 31097454 31097472 CCAGCTTCTGTCTGTAGGG 60 NA Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 2 1 1 60 4 172125711 172125730 CTTGCCAAGATGATGTTCCT 58 172125753 172128413 AAACCTTGTTGGTTAGCCT 57 NA DesignNoJunction Rattus norvegicus 81 Olr132 ENSRNOG00000029051 ENSRNOT00000050248 3 1 1 60 1 169074695 169074713 TAACATTGACCACCATGCC 58 169074734 169074755 CCAATTTCCCTGTGATTTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edn2 ENSRNOG00000009390 ENSRNOT00000012569 1 1 1 85 5 139103747 139105709 AAGCTGAGGGACATCTCAG 59 139105758 139105776 CTAGAGTGTGCAGGGATGG 60 NA Rattus norvegicus 81 Kptn ENSRNOG00000001493 ENSRNOT00000002043 1 1 1 80 1 78020614 78021613 TGGTATACTGGGACCTTCTG 58 78021656 78021674 AGAGTACGCTGTCAAACTG 58 NA Rattus norvegicus 81 Retnla ENSRNOG00000001955 ENSRNOT00000002676 2 1 1 80 11 54544627 54545096 CTAGCCCATCAAGATAACTATCC 58 54544569 54544587 GGCCCATTTGCTCATAGAC 59 NA Rattus norvegicus 81 Cherp ENSRNOG00000012323 ENSRNOT00000017424 3 1 1 82 16 19075379 19075398 ACGGCTACTTTGATGACTCC 60 19075443 19075616 ATTGATGAGAGTCGCCTGG 60 NA Rattus norvegicus 81 Knstrn ENSRNOG00000009334 ENSRNOT00000012454 3 1 1 80 3 110618698 110618716 GATGGCCAGTTCTAAGACG 58 110618760 110622242 CGAGTTTGTGTATCTGCGG 59 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000091240,ENSRNOT00000083362 2 2 3 60 X 62363956 62363976 AGCAATCAGTACCAGGAAGAG 60 62363997 62364016 TTGGCGATTTACTCTTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578,ENSRNOT00000087578 1 3 5 155 7 115767352 115767370 GGAGAAGCTGGAGACACTG 60 115775907 115775925 CAAGGACCACAGTTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_6_0565.1 ENSRNOG00000042697 ENSRNOT00000058379 3 1 1 60 6 47724191 47724209 ATGGGCACCTGGAAATCTC 60 47724231 47724251 TGTCAATAGCAACCTTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps33 ENSRNOG00000026528 ENSRNOT00000039067 1 1 1 80 4 67610528 67610546 GGTACCCGAATCACAACAC 59 67607615 67610485 AGTCCTGATGCTCATCTCTG 59 NA Rattus norvegicus 81 RGD1565368 ENSRNOG00000050630 ENSRNOT00000047820 2 1 1 60 8 45561540 45561560 CCTTCTCTTGTGACAAAGTGG 59 45561580 45561600 TAGTTGAGGTCAATGAATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morc1 ENSRNOG00000032101 ENSRNOT00000046330 1 1 1 80 11 54836370 54836388 TTTAGAGGCTCTGCAATGG 58 54826888 54836329 CTCCATTTGAGACAAAGATCAC 58 NA Rattus norvegicus 81 Ucp2 ENSRNOG00000017854 ENSRNOT00000024156 1 1 1 80 1 165511151 165511170 GGAGATACCAGAGCACTGTC 60 165511213 165511306 GAGAGGTCCCTTTCCAGAG 59 NA Rattus norvegicus 81 Rn60_X_0636.3 ENSRNOG00000051268 ENSRNOT00000075898 3 1 1 88 X 62978112 62978130 CAAAGTTGCAGGCATCCTG 60 62978179 62979387 TTAGCTGCTTTCTGATTTCGTC 59 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 3 1 1 65 4 120157481 120157499 TGAGAACGGACATGAACGT 59 120157528 120159019 CTTGGGATACCTGGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Olr750 ENSRNOG00000004920 ENSRNOT00000006522 2 1 1 60 3 102484142 102484162 CTTATGACCGTTATGTAGCCA 58 102484102 102484122 TGTCTGTTCATGATGCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 1 1 1 60 4 200783 208529 ATACCTGAAGCTGTGGAGG 59 208553 208571 GGACAGTGAACACCATCTG 58 NA DesignNoJunction Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 2 2 2 80 20 6895719 6898882 TTACCCATGGAGAAGACCTC 59 6898924 6898943 TTTGGAAATGGAAGTTGGGT 58 NA Rattus norvegicus 81 Rn60_6_0926.1 ENSRNOG00000051305 ENSRNOT00000075407 3 1 1 60 6 82983383 82983404 GAACCTTGTTACTGAAATCCTC 57 82983424 82983443 TGCCTCATCCTTAACTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085,ENSRNOT00000081708 3 2 2 80 17 18041215 18041233 ACATCGGCAAGTTTGACAG 59 18041277 18043248 TATCTGCATAGCGGTCACG 60 NA Rattus norvegicus 81 Ddb1 ENSRNOG00000020715 ENSRNOT00000028188 3 1 1 80 1 226663929 226665072 CCTCCTATCATTAAGCAAAGCA 59 226665111 226665131 CATATCTCCCAGAAGGTACCG 60 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000085856 3 1 3 60 5 48084772 48084790 AGGGATTTAGAACGCAGGA 58 48084730 48084752 GAGTCATCTCAGTAATAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col9a2 ENSRNOG00000011502 ENSRNOT00000048506 1 1 1 91 5 139966007 139966025 CAGGTAAAGTTGGTCCTCC 58 139966163 139967339 CATTAAACCATCAATGCCAGG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 1 2 2 80 10 18088984 18089287 CATTAAGAACGGTCAGTTTAGG 57 18088925 18088944 TGCCTTCATAGTTCATTGCT 58 NA Rattus norvegicus 81 Utp18 ENSRNOG00000002644 ENSRNOT00000003582 2 1 1 80 10 81569556 81570807 TACCTCTTCTGGGAATGGA 57 81569494 81569513 CTGCCTTCATCAAGAAATCG 57 NA Rattus norvegicus 81 Rn60_X_0631.1 ENSRNOG00000051031 ENSRNOT00000076130 3 1 1 60 X 62457123 62457141 GACAGATGTGACGAGATCC 58 62457081 62457099 CCACAGACTTAGGACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp10b ENSRNOG00000003781 ENSRNOT00000029118 1 1 1 80 10 28785862 28785880 TCAATGTCGCACATTCCTG 59 28785924 28788759 CGCAGGTTTCCTGATTCTC 59 NA Rattus norvegicus 81 Pias1 ENSRNOG00000034272 ENSRNOT00000066009 3 1 1 80 8 67809843 67809863 CACAAGAAGATCACTTCCCAC 59 67808999 67809801 TAGGTGGAAGGTAACCTGG 58 NA Rattus norvegicus 81 Myo1c ENSRNOG00000004072 ENSRNOT00000036666 3 1 1 80 10 63818267 63818368 CAACCTAACTGGAATCTCCG 58 63818411 63818429 TTCTGCTTGCTGTCTTCAC 58 NA Rattus norvegicus 81 Ramp3 ENSRNOG00000053766 ENSRNOT00000086468 1 1 1 80 14 86937070 86937088 CCTTTGCCGAAATGATGCA 60 86937130 86938734 TGAAGCTTTCGTAGTACACGA 60 NA Rattus norvegicus 81 Fbxo48 ENSRNOG00000023026 ENSRNOT00000032965 3 1 1 80 14 100135590 100135608 CTGCTTGAGCATAAGAGCT 58 100135652 100136112 AGGAGTATTACCCTCCAGG 57 NA Rattus norvegicus 81 Clgn ENSRNOG00000003755 ENSRNOT00000005071 1 1 1 80 19 24575597 24575618 AGACGCAGAAACTATAGAAGGG 60 24575657 24576517 TCAGCATCCTTCATCTCATCC 60 NA Rattus norvegicus 81 Ankrd40 ENSRNOG00000002935 ENSRNOT00000067751 2 1 1 82 10 82038367 82038722 TTATGGGAGTGGAAGAAGCTG 60 82038766 82038784 ATAGTTGGGAACGAAGGGC 60 NA Rattus norvegicus 81 Prl2c1 ENSRNOG00000039058 ENSRNOT00000059738 3 1 1 82 17 38851034 38851053 AAAGCCACAGACATAAAGCT 58 38850107 38850991 TCTCCATTCTGAAGCATTCTG 58 NA Rattus norvegicus 81 Sptlc3 ENSRNOG00000004443 ENSRNOT00000005920 1 1 1 80 3 132653929 132678698 AAGGAAACTTTGGAGGTGTG 58 132678740 132678759 CCATCTCTATAAGTCGCCGT 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076777 3 1 4 92 6 52460156 52531801 CACTGCTCCGACAATATGC 59 52531857 52531875 CTTGACCACCTGATTGCAG 59 NA Rattus norvegicus 81 Ninj1 ENSRNOG00000016587 ENSRNOT00000022341 3 1 1 99 17 15868728 15868746 ATGAGTTCGCCTTCTTCGT 59 15867558 15868669 TCATACTTGACCAGGAAGATGAG 60 NA Rattus norvegicus 81 Tmem104 ENSRNOG00000025669 ENSRNOT00000055037 1 1 1 80 10 103749139 103749549 TGGAGATCCACAAGGAAGAG 59 103749591 103749610 TCTCGTAGTTGTCTTGGCTG 60 NA Rattus norvegicus 81 Vpreb2 ENSRNOG00000001839 ENSRNOT00000002517 2 1 1 60 11 87158404 87158423 TCTTCCTTCCTTGGAACCTC 59 87158363 87158382 CAATGTTATGGTTGCTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabrp ENSRNOG00000032417 ENSRNOT00000043036 2 1 1 80 10 18488622 18488640 TCCTGGTGGTGTTATCCTG 59 18487925 18488579 CTGTTGTCACTCCAATGCAG 60 NA Rattus norvegicus 81 Tdp2 ENSRNOG00000018246 ENSRNOT00000059570 3 1 1 81 17 42236110 42236134 CCTGGAATATTGATGGATTAGATGG 59 42235375 42236071 GGACTGTACAAAGCAAGGC 59 NA Rattus norvegicus 81 Zfp791 ENSRNOG00000023920 ENSRNOT00000037766 3 1 1 86 19 26243144 26243164 TCAGTACAGAATCCAAGAGGA 58 26239277 26239298 CTTTCTCTATGCTGAGTAACCT 57 NA DesignNoJunction Rattus norvegicus 81 Scrt2 ENSRNOG00000005148 ENSRNOT00000006833 2 1 1 260 3 147597075 147597093 CTTCATTTCTGATGGGCGT 58 147597317 147597335 ATAGACACGTAGGCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 3 2 2 80 13 96233890 96233911 ACTGTGAGACAGAAGATTATGG 58 96233318 96233852 CTTCATCAGTCTCAAAGTTAGC 57 NA Rattus norvegicus 81 LOC100364352 ENSRNOG00000043320 ENSRNOT00000040989 2 1 1 80 1 83310135 83310154 AATCTTCAGCACTTTCTGGA 57 83310197 83315146 AATTCGCTTTCCTGTGGAG 58 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 1 2 2 134 9 9984376 9985197 GCCAAGAAACACCAGACTC 59 9983270 9983288 CTATGAGGAGGGTTCCCAG 59 NA Rattus norvegicus 81 LOC100911241 ENSRNOG00000039251 ENSRNOT00000060114 3 1 1 83 18 35291729 35291747 TCTCAGCAACATGAAGCCA 60 35291794 35293375 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 RGD1559683 ENSRNOG00000009905 ENSRNOT00000013198 2 1 1 82 6 27309162 27323859 CATGCCCGGATATAAAGGC 59 27309098 27309117 GGAAGTACTTGAAGGTGGTG 58 NA Rattus norvegicus 81 Tnip2 ENSRNOG00000013805 ENSRNOT00000018477 3 1 1 80 14 81496905 81496924 AACATCTGGCCAAATGTCTG 59 81496967 81499489 TATGCTCTAGCTCAGCAGG 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000061715 ENSRNOT00000080431 3 1 1 82 X 45179131 45179153 GACAGAATACATGAACTTCGTGG 60 45178466 45179089 TTGGACAGGTGTCTGTGTC 60 NA Rattus norvegicus 81 Cage1 ENSRNOG00000024111 ENSRNOT00000038349 2 1 1 80 17 27459103 27459125 GAAATGAGTCTGTACACATGTCC 60 27459163 27467230 AATTCCCAAGGTTGATGTCAC 59 NA Rattus norvegicus 81 Ube2d4l1 ENSRNOG00000029497 ENSRNOT00000045603 2 1 1 60 X 83570580 83570600 CCAAATATCAACCGTAAGGGA 58 83570621 83570640 CTGGTGACCACTCAGATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 1 2 2 80 2 189730376 189730533 ATACACTTCGACAGGCTCC 59 189730577 189730595 AGTTTGAAAGCATGGAGCG 59 NA Rattus norvegicus 81 Gadd45g ENSRNOG00000013090 ENSRNOT00000018252 2 1 1 92 17 13392559 13392577 CATTGCACGAACTTCTGCT 59 13392383 13392503 TGTCAGGGTCCACATTCAG 59 NA Rattus norvegicus 81 Myot ENSRNOG00000047186 ENSRNOT00000070817 1 1 1 80 18 35577343 35577364 GTTCTATATTACCGTCTCAGCC 58 35577402 35581415 CTGAGGATTGTTGATAGTTGGA 58 NA Rattus norvegicus 81 Map4k1 ENSRNOG00000020505 ENSRNOT00000027837 1 1 1 80 1 87944195 87944215 ACAACTTTGTCAAAGTCACCC 59 87944257 87945131 ACACCAGCTGATGACTGAG 59 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 3 2 2 91 10 37757309 37764327 CCTGTGCTATGGTATACCAGAG 60 37764378 37764397 GGGAAACAGAAGGTTTGGTG 59 NA Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 1 2 2 80 7 15199962 15199982 AGTCTTATTAATCTCCCGCTG 57 15199809 15199920 ACACAGATGTTCCCTTTGG 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 3 2 2 81 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013122 6013902 TATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000049574 1 1 2 80 1 227763115 227765893 AAATCTTTGGTAGATGGCAGC 59 227765932 227765953 GACAGAGATGATAATGATGCCC 59 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 1 2 2 80 14 91593745 91594723 TTCCTCTGTATACTGGTCATGTG 60 91594761 91594781 TGGCCACAGACTTGATATCTC 60 NA Rattus norvegicus 81 R3hcc1l ENSRNOG00000051256 ENSRNOT00000081765 3 1 1 83 1 261803924 261803942 ATTGCTGTGGAGGAAAGCT 60 261803984 261815822 TCCTGATAACTCTTGTAGAAGACG 60 NA Rattus norvegicus 81 Trib3 ENSRNOG00000007319 ENSRNOT00000009840 3 1 1 114 3 147814739 147815871 TGTGAGAGGACGAAGTTGG 59 147814643 147814663 GTATCTCTGGTCCCACATAGG 59 NA Rattus norvegicus 81 Olr145 ENSRNOG00000048582 ENSRNOT00000072668 3 1 1 60 1 169269949 169269969 AGCTTTGATCGTTATGTAGCC 59 169269909 169269927 CATCAGTGAGCACTGTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849,ENSRNOT00000084308 3 3 3 63 7 18577192 18577211 CAAGTGACTTCAAGGGATGG 59 18576711 18577166 CACTCGGTGTATCCAAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr741 ENSRNOG00000053815 ENSRNOT00000087141 2 1 1 60 3 79121436 79121457 CTCCCATGTATATCTTCCTCAG 57 79121397 79121420 ACAGTAGAAGAGTAGAAGATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dtnbp1 ENSRNOG00000048719 ENSRNOT00000074600 2 1 1 83 17 20166601 20167630 AAGGATTTGACCAAGTTTGCTC 60 20181075 20181093 TTCCATGGAGGACATGCTG 60 NA Rattus norvegicus 81 Lrr1 ENSRNOG00000004216 ENSRNOT00000005595 2 1 1 80 6 91466143 91468529 CATCTGTCTGAGTAAGGCCA 59 91468571 91468590 ACATCAGAGCCTCTATGAGC 59 NA Rattus norvegicus 81 Ceacam19 ENSRNOG00000043088 ENSRNOT00000045073 3 1 1 80 1 80808458 80809570 TGTTCTCAGCTTTGTTCCTG 59 80808397 80808415 GCTGCTCTGGAATCATCTG 58 NA Rattus norvegicus 81 Cmss1 ENSRNOG00000027888 ENSRNOT00000031464 3 1 1 80 11 45325063 45325600 CACATAAAGGTCCAGGAGCA 60 45325642 45325661 TTTGATTCTCCCTGGAGTCC 59 NA Rattus norvegicus 81 Lrrc30 ENSRNOG00000030389 ENSRNOT00000049720 1 1 1 60 9 115850292 115850310 CCCAAAGAAGTCAGTCTCC 58 115850250 115850268 CCAGGCAGTTCATGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102,ENSRNOT00000078175 2 2 2 80 4 114892413 114892432 AGCGAATCGAGAAAGTTCAG 58 114892472 114892717 TTGTCTCCTCAAACTCTTTCTC 58 NA Rattus norvegicus 81 Olr218 ENSRNOG00000048022 ENSRNOT00000049686 3 1 1 60 1 170927767 170927788 TACCCATGTACTTCCTACTGAG 59 170927728 170927747 ACAACTGATGTGAAGAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam46d ENSRNOG00000023637 ENSRNOT00000031200 1 1 1 60 X 78992311 78992331 GATATGAAAGAAGGCAGACCC 59 78992351 78992371 TCTCCAAGTACTTTCAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd7 ENSRNOG00000006689 ENSRNOT00000008901 3 1 1 80 5 21923794 21923813 TTAATCTTACCGCTGCTGAC 58 21923856 21924421 ATCTAGCTTGAGCCTGGAG 59 NA Rattus norvegicus 81 Cdc42ep3 ENSRNOG00000032136 ENSRNOT00000048711 3 1 1 98 6 1942821 1942839 AGCACTAGCGAGGATTGTG 60 1924172 1942759 AGGAGAAACCAGCTGTCTC 59 NA InUTR Rattus norvegicus 81 Tmem136 ENSRNOG00000021793 ENSRNOT00000038647 2 1 1 65 8 47401205 47401223 CTTCATCGATGGTCCTTGG 58 47399764 47399782 ACGTGAACTTGGAGAGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Dcun1d3 ENSRNOG00000014037 ENSRNOT00000019167 3 1 1 91 1 189628695 189630453 GCAAATTCACCAGGAAGGA 58 189628622 189628640 TAAGAGGCTAGGGAAACGT 58 NA Rattus norvegicus 81 AABR07018269.1 ENSRNOG00000031720 ENSRNOT00000041154 1 1 1 80 15 49666827 49666845 CAAAGCTGACCAAATGGCA 59 49666146 49666784 CCATGACACCTAGGTCTGTC 60 NA Rattus norvegicus 81 Itgal ENSRNOG00000017980 ENSRNOT00000024404 2 1 1 80 1 198774799 198774821 GAGAACTCCACACTCTATATCAG 58 198774858 198775309 AATCCTCACCTTGTAGATATGC 58 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 2 1 1 67 7 26141420 26144307 CCTGCGAGCTTAATAGGGT 59 26141371 26141390 GTCGTGTTGAATCAGGAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Coro2b ENSRNOG00000015257 ENSRNOT00000020951 1 1 1 80 8 67382902 67382920 GCTTCTACAAGCTCGTGAC 59 67382531 67382859 CCTGGTAGGAATCTGACCTC 59 NA Rattus norvegicus 81 Atg9b ENSRNOG00000023449 ENSRNOT00000029724 1 1 1 80 4 7320808 7320909 TTGGTCAAGTGATGGTTCC 58 7320953 7320971 TTTGGGAACAGATTCTGGG 57 NA Rattus norvegicus 81 Il33 ENSRNOG00000016456 ENSRNOT00000022056 2 1 1 80 1 248141779 248143203 CTTTCCTGCACAATCAGGAG 59 248143242 248143264 CAGATGTCTGTGTCTTTGATAGG 59 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967,ENSRNOT00000087964 2 2 2 80 13 96149025 96149044 AAAGAGTACAAAGGCAACGC 60 96149086 96153400 ACAGAGAATCTCTGACAGGG 59 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 2 2 2 80 9 9990785 9991738 AAATCCTACACAGCATGGAC 58 9991781 9991799 GAGAGTGCAGCAGAAAGTG 59 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 1 2 2 81 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054946 AGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Zfp958 ENSRNOG00000030410 ENSRNOT00000050885 2 1 1 82 12 5487195 5490653 TAGAAGACACGGAAGACCTG 59 5487132 5487150 GATGTGCAAAGGCTTCACC 60 NA Rattus norvegicus 81 Ano9 ENSRNOG00000015830 ENSRNOT00000044393 2 1 1 80 1 213917659 213917778 TGAGGAAGAGGAAGAGATGG 58 213917598 213917618 CTCAGATAGGAATGATGGTGC 58 NA Rattus norvegicus 81 Olr1222 ENSRNOG00000030341 ENSRNOT00000042601 1 1 1 60 8 41937834 41937855 TAGTCTCAGGAACAAGGATGTC 59 41937870 41937894 CATTGTGATTCTCCTCATAGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fut8 ENSRNOG00000008451 ENSRNOT00000011220 2 1 1 80 6 100513228 100525119 GGCAAAGACAAAGTACTCCA 58 100525160 100525180 GTGTACCGATTGTGTAATCCA 58 NA Rattus norvegicus 81 Tceb3 ENSRNOG00000010902 ENSRNOT00000064596 3 1 1 80 5 154355644 154357072 ACATTCTTGTGGAGACTGGG 60 154355583 154355601 GGTCTCTGGCAAAGTTTCC 59 NA Rattus norvegicus 81 Olr1561 ENSRNOG00000052915 ENSRNOT00000081342 3 1 1 90 11 43743157 43866643 ATCTACCTGGTCACCATGG 59 43866695 43866715 CCAGAAAGATGTACATGGGTG 59 NA Rattus norvegicus 81 Tpt1 ENSRNOG00000001049 ENSRNOT00000001383 2 1 1 83 15 57892624 57892990 ACATGAAATCACTCAAGGGC 59 57893036 57893054 TAATTTGCTCTGCAGCTCC 58 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000020774 ENSRNOT00000074580 3 1 1 98 1 87792307 87797515 AACATAAGAAACAGGTGGCG 59 87797576 87797594 CATCTTTGTACAGGGCCCT 59 NA Rattus norvegicus 81 Mxi1 ENSRNOG00000034078 ENSRNOT00000042822 1 1 1 80 1 274087262 274088368 GGATTCAGAGCGAGAGGAG 59 274088411 274088430 GTGGTACTGATGTTGTCCAC 59 NA Rattus norvegicus 81 Olr1711-ps ENSRNOG00000047164 ENSRNOT00000074773 3 1 1 60 20 1216614 1216633 CTGGACCTCTCATCACTCTC 59 1216656 1216674 TTCGTGCTAGGGAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 2 2 2 97 2 157758563 157759157 CAGTTTCGAGATTGTTGCC 57 157758484 157758505 GGTGGTGGAATACATTAATCAC 57 NA Rattus norvegicus 81 Slc25a10 ENSRNOG00000036693 ENSRNOT00000054963 1 1 1 80 10 109668896 109668915 GGGACTACATGACCAAGGAC 60 109668957 109669061 CAGTTAAACCACTGATGCCG 60 NA Rattus norvegicus 81 Ggn ENSRNOG00000023931 ENSRNOT00000056955 3 1 1 174 1 88115604 88115622 TGCTTAACTCCTGTCCCTG 59 88116453 88116471 AAGTCGTAGTGCTCTAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 1 2 2 80 13 89587354 89588670 GAAAGACATGATACTGTCAGCA 59 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 RT1-M2 ENSRNOG00000049590 ENSRNOT00000041074 1 1 1 80 20 1339468 1339487 TGGAGACTTCAGCAATCCTC 60 1339220 1339426 AGTGGGAGCCTTTAAAGGAC 60 NA Rattus norvegicus 81 Mmp21 ENSRNOG00000017756 ENSRNOT00000023946 1 1 1 80 1 205748052 205748072 TGAGATCCACTTTGATGACGA 59 205747718 205748012 TGGACAGCTACTTTGAGAAGG 60 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000049868 ENSRNOT00000032394 1 1 1 82 1 88169595 88169836 TGCTTGTCACAGCATACCT 59 88169531 88169549 ATGGAGGTCAGAAACACGG 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373,ENSRNOT00000087416 2 3 3 81 5 142703749 142704803 AGCACCCAAATGAGATCTG 58 142704847 142704866 GCCTCTTCACTTGGATTCTC 58 NA Rattus norvegicus 81 Podnl1 ENSRNOG00000006741 ENSRNOT00000037453 2 1 1 80 19 25242773 25243257 CACCTGCAGAACAATCTTATCTC 60 25243296 25243315 CTGGAGATACAATTCCCGGA 59 NA Rattus norvegicus 81 P2rx5 ENSRNOG00000019208 ENSRNOT00000026156 1 1 1 80 10 59731222 59731506 GTTCAACTTCTCCAAAGCCA 59 59731548 59731567 AGATTTGTGGAGCTGAAGTG 58 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 1 3 3 80 11 53528276 53529908 GCATCATGGCTTGTGAACC 60 53528214 53528235 GTCCAAGTAATTCTGCTAGAGC 59 NA Rattus norvegicus 81 Sh3bp4 ENSRNOG00000019316 ENSRNOT00000026312 2 1 1 80 9 96271691 96277405 ATGATGTCAAAGTGCCTTCC 59 96277448 96277466 TCGCAATCACTTCCTTTGC 59 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 3 2 2 176 18 32340785 32340803 TGAGGATTCTTCCCGATGG 59 32351715 32356445 CTTCATTTGGTGTCTGCGA 59 NA Rattus norvegicus 81 Gem ENSRNOG00000015160 ENSRNOT00000020826 3 1 1 87 5 25350966 25352334 CTGTGTCAGAAGGGAGAGC 60 25352385 25352403 AGTTCCTTCACGTTGTGCT 60 NA Rattus norvegicus 81 Nkx2-6 ENSRNOG00000021910 ENSRNOT00000032826 2 1 1 64 15 51034668 51034686 TCAAATCTTGTGAGGGAGC 58 51037367 51037385 AGGTTCTCGACTCCAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ppp5c ENSRNOG00000016907 ENSRNOT00000023078 2 1 1 80 1 78946760 78947257 TCATCTACTTCGAGGCAACC 60 78946699 78946717 GTGTACTTGGCCTTCACCT 60 NA Rattus norvegicus 81 Rn60_20_0009.2 ENSRNOG00000051909 ENSRNOT00000080670 1 1 1 60 20 1505477 1505495 CTTTGCTTCATCACCACCA 58 1505435 1505453 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lce1l ENSRNOG00000042105 ENSRNOT00000065884 1 1 1 100 2 193165026 193165696 CTGAACAGATTTACAGACTTCCTC 59 193164949 193164967 TTAGGAGTCTGGCACTTGG 59 NA InUTR Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 3 2 2 80 6 49529802 49530694 AGTGATCATGGAGACGGAC 59 49530737 49530756 CATGTGAGAAGTAGGCACAG 58 NA Rattus norvegicus 81 LOC367117 ENSRNOG00000031132 ENSRNOT00000046322 3 1 1 81 8 86284747 86286968 AGCAGCTGTGTTTATCAATGAC 60 86284687 86284707 GTGGTAGCACACTATTGTCCT 60 NA Rattus norvegicus 81 Snx7 ENSRNOG00000017077 ENSRNOT00000022947 2 1 1 80 2 221062458 221065460 CAGTGAGATGTTAGTGGGTG 58 221062397 221062418 TAGGTCAAAGCTTCTACTTTGG 58 NA Rattus norvegicus 81 RGD1563905 ENSRNOG00000049382 ENSRNOT00000071025 3 1 1 67 1 100676003 100676021 ACTCTCCATTCTCAGGCTC 59 100676055 100676073 CTTATGCCCATATGCCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000087449,ENSRNOT00000001264 3 2 2 97 12 9988107 9988424 CAAGAGCGCAATGATTGTG 58 9987911 9987931 CCTCTACATAGACGAGTCTCG 59 NA Rattus norvegicus 81 LOC100912634 ENSRNOG00000032845 ENSRNOT00000064243 2 1 1 80 17 42849851 42850512 CTTATACAACAGGACTCAGGC 58 42849791 42849810 AAGTCTTTGAGTCCAGACCA 59 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 2 1 2 236 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116964752 116964770 TCAAGGCAGATTGCTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1744 ENSRNOG00000029420 ENSRNOT00000044570 1 1 1 60 20 1862104 1862122 CTGTCCCTCTTCTATGCTG 57 1862146 1862164 TCCTCAGGCTGTAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eno2 ENSRNOG00000013141 ENSRNOT00000005601 2 1 1 80 4 157288040 157288540 CCGGAACTATCCTGTGGTC 60 157287978 157287996 ACATTGGCTGTGAACTTGG 59 NA Rattus norvegicus 81 Evi2b ENSRNOG00000014125 ENSRNOT00000018898 1 1 1 60 10 66857498 66857518 CATCATTCCCAGATCAACGAG 59 66857458 66857477 ACAGAGGCACACTAAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir592 ENSRNOG00000036461 ENSRNOT00000054571 1 1 1 60 4 55182420 55182441 CAATATGCGATGATGTGTTGTG 59 55182381 55182399 GTCATGATGTTGCGTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 2 2 2 81 2 52318872 52318890 GGAACTGCTGAATGCTCTG 59 52318934 52320386 TGACCCTGTCAACTTTAGCA 59 NA Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 1 2 2 80 3 124097253 124097417 GTACCTGAAGGTGGAGAGC 60 124097461 124097479 TCCGTCCATTCTCCAAAGG 59 NA Rattus norvegicus 81 St3gal4 ENSRNOG00000009850 ENSRNOT00000013243 1 1 1 80 8 36274411 36274708 GCAAATCTCACTGGAAGCTC 59 36274350 36274368 TGTCTTCTCGGGAGATGGA 60 NA Rattus norvegicus 81 Gtpbp8 ENSRNOG00000002044 ENSRNOT00000002797 2 1 1 80 11 60913546 60913565 CAAGTGCTCCAGATTCAGGA 60 60913607 60916453 GGTTACTGCGCTTATAGGGA 59 NA Rattus norvegicus 81 Rbp7 ENSRNOG00000015850 ENSRNOT00000021348 1 1 1 81 5 166280680 166280700 ACTTGTGTACAGAAAGGAGAG 57 166278444 166280637 AGAACATTTCCAGGTGGAG 57 NA Rattus norvegicus 81 Esyt3 ENSRNOG00000022704 ENSRNOT00000017658 1 1 1 80 8 107579275 107579293 CCAAGATCCGGGAGAAGAG 59 107576441 107579231 TCACCTTGGGACACTTCTG 59 NA Rattus norvegicus 81 Tek ENSRNOG00000008587 ENSRNOT00000032248 3 1 1 80 5 113843317 113844194 TAGCTTAGGAGGCACTCCA 60 113844237 113844256 TTCTCCAATCTGTAGCCCTG 59 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239,ENSRNOT00000079819 1 2 2 80 6 21105434 21105941 GATCTGCTATTTCATGAGGTACTG 59 21105377 21105396 TCAGTCATGCGAATCAAACC 59 NA Rattus norvegicus 81 Pus3 ENSRNOG00000012994 ENSRNOT00000017648 3 1 1 80 8 36767309 36767329 GTAGAAAGCAGACAGACTTCC 59 36767369 36767494 AGAAATTACCTGTCCAAAGGC 59 NA Rattus norvegicus 81 LOC688335 ENSRNOG00000049188 ENSRNOT00000073660 2 1 1 84 8 38685464 38686113 GCTTCCTACAAGCTCTGAC 58 38686158 38686179 GCTTTACAGGTAGAGTATCCTG 58 NA Rattus norvegicus 81 Nol7 ENSRNOG00000017904 ENSRNOT00000024122 3 1 1 80 17 24018993 24019012 GGAACATGAACAACCTGCTG 60 24019054 24019530 TTAGTCTGACCGACAGACTG 59 NA Rattus norvegicus 81 Olr408 ENSRNOG00000047092 ENSRNOT00000045825 1 1 1 60 3 16287895 16287915 GGTCACACCAATGTTGAATCC 60 16287937 16287955 TGCTCCTTTCATATCCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499276 ENSRNOG00000022900 ENSRNOT00000031258 3 1 1 94 1 201700928 201702532 AAGAAATTCTACAACTCGGTGG 59 201700855 201700873 GAGTTCCCTCAGCATCCTC 60 NA Rattus norvegicus 81 Hspa9 ENSRNOG00000019525 ENSRNOT00000026696 3 1 1 80 18 27734151 27734695 GTTCACTTTGATTGGAATTCCC 58 27734092 27734111 ATCCCATTGGCATCAATGTC 59 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785,ENSRNOT00000049812 2 2 2 80 1 222683894 222686399 AGGACATCCATTCAAGGCC 60 222683832 222683852 ATTGCAGCATTCATGTAGCTG 60 NA Rattus norvegicus 81 Chad ENSRNOG00000003304 ENSRNOT00000004435 2 1 1 81 10 82293127 82293145 GACAATGCCTTCCAGTCCT 60 82293188 82294852 CAGCATCTGAGAACTTCTCCA 60 NA Rattus norvegicus 81 Pygl ENSRNOG00000006388 ENSRNOT00000009183 2 1 1 80 6 92601316 92602530 AAGAAAGGGTATGAGGCCA 58 92601254 92601274 GAAGCCATTGTCAATTTGGTC 59 NA Rattus norvegicus 81 Olr1352 ENSRNOG00000037404 ENSRNOT00000056602 1 1 1 60 9 99777578 99777597 CATCCTCAGAATGCACTCAG 59 99777620 99777638 GTGAGAGCCACAGGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss35 ENSRNOG00000025184 ENSRNOT00000034683 2 1 1 94 8 94424127 94424145 GACACAGCAAGCTTCTCAG 59 94437773 94437791 CAAAGACAGGGTCCATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mcm6 ENSRNOG00000003703 ENSRNOT00000004969 1 1 1 80 13 45049357 45049376 ATAGACCGGGTTTATTCCCT 58 45048382 45049315 CTCTTTGGAAATCTTGGGCT 58 NA Rattus norvegicus 81 AABR07027854.1 ENSRNOG00000057759 ENSRNOT00000089746 3 1 1 83 17 46323273 46323292 AGATTCTCAGAGACCAGGTG 59 46323337 46323358 CGTAGGTGATGTTCAGTGTC 58 NA Rattus norvegicus 81 LOC680367 ENSRNOG00000047843 ENSRNOT00000071798 1 1 1 60 8 41702570 41702588 TATCTTGCTGCTCCCACTG 60 41701865 41702546 ACCACAGGAATCTAGCAGG 59 NA DesignRelaxed Rattus norvegicus 81 Itga11 ENSRNOG00000006723 ENSRNOT00000008971 1 1 1 80 8 67665223 67668993 CCTGATCCAGAAGGATGACTC 60 67669034 67669053 ACGTTGCAGACTTTCTTGTG 59 NA Rattus norvegicus 81 Prmt1 ENSRNOG00000026109 ENSRNOT00000064272 2 1 1 80 1 100971889 100972397 TTCTCTACCAGTCCTGAGTC 58 100971828 100971848 GGTCTTCACTGTTAGGTAGTC 58 NA Rattus norvegicus 81 LOC499542 ENSRNOG00000032427 ENSRNOT00000046481 2 1 1 87 2 61756296 61756314 ACAAGGACTTCAATGTGGG 58 61752627 61756245 ACTGAAACAGTTCTGGTGC 58 NA Rattus norvegicus 81 Nthl1 ENSRNOG00000012213 ENSRNOT00000016490 2 1 1 82 10 14002446 14002465 AGTGGACCAAGAAGATGACC 60 14002510 14002604 CTCACTCCATAGCACCCTG 60 NA Rattus norvegicus 81 LOC100910445 ENSRNOG00000046411 ENSRNOT00000072355 2 1 1 60 8 43007241 43007259 CACGATCATCCTGATCCTG 58 43007199 43007218 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rin1 ENSRNOG00000050223 ENSRNOT00000072261 1 1 1 80 1 220336240 220336258 CTCTTTGGAGGGCTCAGAG 60 220336299 220336430 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 Olr1748 ENSRNOG00000048232 ENSRNOT00000089207 1 1 1 60 20 1904805 1904826 TCCAATGTACTTCTTCCTCTCC 59 1904847 1904865 ACAGGTTGTGGTGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3d ENSRNOG00000010028 ENSRNOT00000013390 2 1 1 80 15 52130239 52130401 TCTTTCCTGCAGGAACTGG 60 52130177 52130196 GTGCTTCACATGTCCTAGGA 60 NA Rattus norvegicus 81 Kcnh8 ENSRNOG00000058626 ENSRNOT00000087331 2 1 1 80 9 3161118 3161139 GAAGAATCTGAAAGTTCAGCTC 58 3159127 3161079 TCAATTCCATCGACAATCCTC 58 NA Rattus norvegicus 81 Anxa6 ENSRNOG00000010668 ENSRNOT00000014464 2 1 1 80 10 40336100 40336211 TGAAGAAAGCTATGGAGGGAG 59 40336040 40336058 GGATTTCAGCATTGGTCCG 59 NA Rattus norvegicus 81 AABR07012868.1 ENSRNOG00000030847 ENSRNOT00000046960 1 1 1 81 2 212436021 212436039 CCGAGTTATCGACCCAGTC 60 212436082 212436221 AGTGTCACAGGAGAAACTGAG 60 NA Rattus norvegicus 81 AABR07012868.1 ENSRNOG00000030847 ENSRNOT00000046960 2 1 1 81 2 212436023 212436041 GAGTTATCGACCCAGTCAC 57 212436084 212436223 CTAGTGTCACAGGAGAAACTG 58 NA Rattus norvegicus 81 Pglyrp4 ENSRNOG00000021798 ENSRNOT00000029771 1 1 1 80 2 190132568 190143585 AACAGAAGAAAGCAGCTTGTC 60 190143626 190143645 GAGTCATCTTGAAGCAGTGG 59 NA Rattus norvegicus 81 Cby3 ENSRNOG00000003395 ENSRNOT00000004517 1 1 1 91 10 35858020 35858039 TAATCCAGCAATGGGACCAG 60 35859188 35859206 CTGGAATGATGAAGGCGAG 58 NA DesignNoJunction Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396,ENSRNOT00000028363 2 2 2 80 1 221259324 221259344 GAAGGAGAGGACAAAGAAGAC 58 221259135 221259284 AGGTCCTTTCTTGGATTTCTG 58 NA Rattus norvegicus 81 Ccdc69 ENSRNOG00000021370 ENSRNOT00000039040 3 1 1 80 10 40395129 40395584 GAAACCACATCCAGGATTATGG 59 40395070 40395091 TCATCTCAATAACATGGTGCAG 59 NA Rattus norvegicus 81 Brinp1 ENSRNOG00000005561 ENSRNOT00000007578 2 1 1 80 5 84986556 84989174 GGAGCAATCAAGGTCACAG 59 84986494 84986513 GACAGAACTCACAGAGTCCA 59 NA Rattus norvegicus 81 Klk1c8 ENSRNOG00000048901 ENSRNOT00000072124 1 1 1 81 1 100038809 100038827 TAATGAACCGCAATGTGGG 59 100038867 100039842 CTGGTAATTGACACTATAGCAGTG 59 NA Rattus norvegicus 81 Myo1b ENSRNOG00000048152 ENSRNOT00000068433 3 1 1 80 9 54744256 54745031 GAAACCCAAGGACATTATTCCA 59 54745069 54745090 AAATCTTCTGAATGAGAGTGGC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810,ENSRNOT00000089763 3 2 2 80 8 48720658 48720676 ACTTGCTGTACAGACTGGG 59 48720718 48720929 ACTGATGTAGGAACTACCCAC 59 NA Rattus norvegicus 81 LOC687679 ENSRNOG00000032232 ENSRNOT00000050931 1 1 1 60 1 91588440 91588460 GAACCTCGTGATTGATGAGTG 59 91588400 91588418 CCCGATGTTGTTCTGTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr234 ENSRNOG00000033512 ENSRNOT00000051038 1 1 1 60 1 171274868 171274888 TTCAGCAGATACTTACAGCAC 58 171274910 171274928 TAGGAGGATTACCACACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc4a2 ENSRNOG00000014347 ENSRNOT00000019666 2 1 1 80 4 7270580 7270711 CATGTCTGACAAGCAATTCC 58 7270519 7270537 AGGAAGGCATTGATAGCAG 57 NA Rattus norvegicus 81 Mycbp ENSRNOG00000017166 ENSRNOT00000023354 3 1 1 86 5 141565030 141565048 CTGCTTCGCCTAGAATTGG 59 141565096 141566210 CTGAACAAGCTTTGCTTTCAG 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063,ENSRNOT00000080655 1 2 2 80 17 45256559 45256580 AGGATTCATCTCAGATGAACCT 59 45256621 45261707 GCATGTTCTCATCCAGGGA 60 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489,ENSRNOT00000055540 2 2 2 80 4 176841433 176842561 TCATCGACCAACATATCCCTC 60 176841373 176841392 AGATCATCCCAATAGCCGAC 60 NA Rattus norvegicus 81 Letm1 ENSRNOG00000016427 ENSRNOT00000022540 1 1 1 80 14 82262186 82262205 AAGATGGTTGATGTGATCCC 58 82262245 82263099 TATCTCTTCTCCCTTCAAACCT 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231,ENSRNOT00000081677 1 2 2 80 9 55386008 55389467 TGTATCACAAGGAAATGTCCC 58 55385948 55385968 TGTGTTGTCTGAACTGTAGTG 58 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 2 1 2 80 13 90521522 90522245 TCTTATGCAGCAGTTACAGGA 59 90527710 90527728 AAAGACCCTGAAGGTCCAG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000088996 1 1 2 80 13 90521519 90522243 CGATCTTATGCAGCAGTTACAG 60 90522446 90522464 TCAAAGTTGAGGCCAGGAG 60 NA Rattus norvegicus 81 Tmc3 ENSRNOG00000025088 ENSRNOT00000037996 2 1 1 80 1 145742690 145744038 AAGGCATGATTTGGATGGG 58 145744082 145744100 GGTACATCAGCCCAATGAG 58 NA Rattus norvegicus 81 Slc44a3 ENSRNOG00000011723 ENSRNOT00000055711 2 1 1 80 2 225090273 225090292 TTCCGATTCATCTCAACGCT 60 225088526 225090232 GAAGACACCACAGACAAACAG 60 NA Rattus norvegicus 81 Fbxl6 ENSRNOG00000025497 ENSRNOT00000035199 3 1 1 84 7 117603482 117603580 CATTCCATGGTCGAGTCCA 60 117603416 117603434 AACTGTAGGTCAGCCACAG 59 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 1 2 2 80 7 116421169 116422136 GTGTGCAGAAAGAGCTCAG 59 116421107 116421125 GTAGCAGTTGATGAGCAGG 58 NA Rattus norvegicus 81 Bola1 ENSRNOG00000021185 ENSRNOT00000028767 1 1 1 163 2 198338788 198339079 GTACAAAGCGGATGCTAAGTG 60 198338645 198338663 CAGTTCCAGTACCTCAGGG 59 NA InUTR Rattus norvegicus 81 LOC102552463 ENSRNOG00000019623 ENSRNOT00000046708 3 1 1 60 1 65597868 65597889 AATACAACACAGTGGTATCCCA 60 65597623 65597641 TCAACATGTGTCTCTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027393 1 1 10 145 18 30006929 30185396 TTGGACTCCTCTGAGAAGC 59 30188402 30188420 GTTGGCCACTGTTGATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000079794 3 1 10 138 18 30020167 30020186 ATACTCTCAGCAAAGGAGGC 60 30020284 30185398 GGGATTCTCAAAGATTTCTTGC 58 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 2 2 2 80 3 46305799 46308048 CACTGTCAGATTCTTCTTGGAG 59 46308086 46308107 TCAAGTCTGTTCCAAATGAACC 59 NA Rattus norvegicus 81 Hint1-ps1 ENSRNOG00000000622 ENSRNOT00000000772 3 1 1 104 10 40208357 40208376 ATCATCCGCAAAGAAATCCC 59 40211357 40211376 GGGTATCACCAGAAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Mgat5b ENSRNOG00000024954 ENSRNOT00000064410 3 1 1 80 10 105915712 105921951 TATCTGGAAGGGCAAGGAG 59 105921995 105922013 TGGCTCTCATAGTACACGG 59 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048459 ENSRNOT00000073197 2 1 1 60 2 233909294 233909313 CCATACGTTATGCACCTCTC 58 233909334 233909354 CACACTTGTATACTGGTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcor ENSRNOG00000042679 ENSRNOT00000036791 3 1 1 93 1 260798395 260798413 CTCAGCAAACTGCTCATGG 59 260798469 260801089 CAAGTACACCGTCTTGTTCG 59 NA Rattus norvegicus 81 Irx1 ENSRNOG00000033609 ENSRNOT00000044690 1 1 1 89 1 33911405 33914382 CTCACAGATGGGCTCTCAG 60 33914433 33914453 GGATAATAAGCAGGCGTTGTG 60 NA Rattus norvegicus 81 Trappc5 ENSRNOG00000001003 ENSRNOT00000001327 2 1 1 74 12 2231559 2231577 CAAAGTTACAGCGCACTGG 60 2231615 2231633 CGATCTCGGGCAATAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdnf ENSRNOG00000012819 ENSRNOT00000041288 2 1 1 87 2 56892573 56892591 GTAAGACGCTTCTCGAAGC 59 56892642 56909748 GGCATATTGGAGTCACTGG 58 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 3 2 2 83 2 144551512 144553591 CCACATGAAGGATGTCGTG 59 144553638 144553656 AGGTCAGTGTTGAGGTTGG 60 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000046941 ENSRNOT00000071638 1 1 1 80 13 27652383 27653491 TTTGTGTATGCAGGAGCAG 58 27652321 27652340 TGATTCTCCAGCATCAACAG 58 NA Rattus norvegicus 81 Ffar3 ENSRNOG00000037467 ENSRNOT00000056714 2 1 1 81 1 89303557 89303803 ACACTCTGCATCTGTGACC 60 89303494 89303513 GAACACCAACAGATCCACTG 59 NA InUTR Rattus norvegicus 81 Maff ENSRNOG00000012886 ENSRNOT00000017181 1 1 1 112 7 120590675 120590693 CACCATTGTCAAGTCCGTG 59 120590769 120590787 CTCTTTAGGACGGGAGTGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008371 3 1 4 60 3 63205049 63207745 CAAGAACAAAGGTGTTATCTGG 58 63205010 63205031 CTTCGGGTTCTCCAAATATTCC 59 NA DesignRelaxed Rattus norvegicus 81 Olr1366 ENSRNOG00000047259 ENSRNOT00000071158 1 1 1 60 10 12490267 12490285 CCCTCATCCTCTCACTCAG 59 12490225 12490243 TCACCACTGCATACATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 1 2 2 80 9 5306580 5312559 ATAGGATTGTGGATCAGTGTCC 60 5306521 5306539 TTTAGCATGCACAGCAGTG 59 NA Rattus norvegicus 81 Gpnmb ENSRNOG00000008816 ENSRNOT00000011945 3 1 1 80 4 78705782 78706073 ATGTGATAACAGATCAGATCCC 58 78706113 78706132 TGAGGAAGGTTTCATCAGAC 57 NA Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 2 1 1 120 2 192283345 192288480 CAAAGTGCCCTGAACACTG 59 192283243 192283261 TCTGGACACTTTGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0611.1 ENSRNOG00000051144 ENSRNOT00000076698 3 1 1 60 X 60458437 60458456 ATTGAATTTGTCCGTCTCCA 58 60458396 60458415 AGCTTGTACTTGGGTTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000079828,ENSRNOT00000066895 3 2 2 94 10 82489384 82489402 ATCAGAGTCCTCCAGATCC 58 82489140 82489327 CTGAACAACCTGACTGTAGG 58 NA Rattus norvegicus 81 Mst1 ENSRNOG00000019680 ENSRNOT00000026711 1 1 1 80 8 116861681 116861792 GGTGAATCCAAAGGTACAAGC 60 116861831 116861852 CACATTACATTCCTGACTGGAG 59 NA Rattus norvegicus 81 Ywhae ENSRNOG00000005290 ENSRNOT00000007100 1 1 1 80 10 63884473 63908533 GAGCGATACGACGAAATGG 59 63908574 63908595 AAGGTTTCGTTCTTCAACTGTC 60 NA Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748,ENSRNOT00000077789 3 2 2 121 16 19361805 19363123 ATTGAGGAGCATGCCTCTG 60 19361321 19361340 TTGATCCCATAGTCGAGTGC 60 NA Rattus norvegicus 81 Prkx ENSRNOG00000060168 ENSRNOT00000090932 3 1 1 80 X 45103397 45109022 ACTGGTGGATAGGACATGG 59 45103335 45103354 CTTCCATGACCTTTGCTCTG 59 NA Rattus norvegicus 81 Olr264 ENSRNOG00000054146 ENSRNOT00000089570 3 1 1 60 1 172665149 172665170 CCTTAAAGTCATCCTCTTCACC 59 172665110 172665130 GTTCCCAGACATAGTCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr270 ENSRNOG00000060915 ENSRNOT00000077837 2 1 1 60 1 172793667 172793685 CCAAGTCCAACTACTCCAC 58 172793708 172793727 ATCACCACCATGTAGAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r61 ENSRNOG00000014181 ENSRNOT00000018981 1 1 1 60 1 75298617 75298637 CCATTGTGTATGCCTACAGAG 59 75298653 75298677 CTTAGAATAGAAGTGGTAGAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ruvbl2 ENSRNOG00000020793 ENSRNOT00000028217 3 1 1 80 1 101416983 101417001 GGCAAGATTTCCAAGCTGG 60 101416781 101416939 CTGCACAAACTTGGTCTGG 59 NA Rattus norvegicus 81 Epha7 ENSRNOG00000007030 ENSRNOT00000009899 2 1 1 80 5 43742350 43742368 GTCCATCAATTCGCCAAGG 59 43742410 43743339 AACTTCTCCAAATTCTCCTGC 59 NA Rattus norvegicus 81 Olr1307 ENSRNOG00000048037 ENSRNOT00000060092 2 1 1 60 8 43304204 43304223 ACACAGTGATGGCTTATGAC 58 43304163 43304183 ATTATTGAGTAGCGAAGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262,ENSRNOT00000084535 3 2 2 80 10 63373243 63374883 AAACCTTACCACTTTGGGAC 58 63374923 63374944 TCTGATATGTTGGGCTTATTGG 58 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000032348 ENSRNOT00000043508 3 1 1 60 6 135139378 135139398 AATTGAAGGTGTTTATGCCCG 60 135139420 135139438 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597,ENSRNOT00000091606 2 3 3 63 1 101692628 101692646 CTTCCTCCTTGTCCCATGG 60 101692673 101692691 TCTGCATCATGACGTTCCT 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Zfp263 ENSRNOG00000007678 ENSRNOT00000010442 1 1 1 80 10 12028131 12028615 GTAAAGGAGAGGGCATTATCTG 58 12028072 12028093 CCCAGTCATATCCTTATCTTCC 58 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889,ENSRNOT00000092189 2 2 2 80 10 40875370 40877720 ACAGCATCAGAATCACCCT 59 40875308 40875330 GCATGATACATGTCTGTACATCC 60 NA Rattus norvegicus 81 Ints5 ENSRNOG00000026005 ENSRNOT00000036115 3 1 1 60 1 225093455 225093475 TAGAAGAAAGTCCTGTGGCTG 60 225093497 225093515 GGGACATGGGATGATGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470,ENSRNOT00000043271 3 2 2 81 18 29592875 29592894 CTGAGATTGCCAGCAAAGAG 59 29592935 29593087 TCAGGATCCTCATCTTTCTTGG 60 NA Rattus norvegicus 81 Tmem247 ENSRNOG00000046926 ENSRNOT00000074516 2 1 1 80 6 10483527 10484140 TGAAGGCTTCTTTGGATGC 59 10484181 10484202 AATCTCTGTCCTCAGAGATTCC 59 NA Rattus norvegicus 81 Lrp2 ENSRNOG00000056184 ENSRNOT00000082624 2 1 1 80 3 55772948 55772967 GAACTGGGTTTGTGATGGAG 59 55772066 55772911 CTATGATGACTCTGGTTACTTTCAC 59 NA Rattus norvegicus 81 Msh6 ENSRNOG00000016134 ENSRNOT00000021923 2 1 1 80 6 11661145 11661668 GTACTTGTGGATGAATTAGGAAGAG 59 11661705 11661724 AGCGAGTTCTTTAACAACCG 59 NA Rattus norvegicus 81 Rhbdd3 ENSRNOG00000027032 ENSRNOT00000031914 1 1 1 80 14 85356548 85356568 ACTTCTTGATGTGTCAGTCCA 59 85356608 85356713 TGCTGAAGCCTTAGAGAAGAC 60 NA Rattus norvegicus 81 AABR07038477.1 ENSRNOG00000038369 ENSRNOT00000058420 3 1 1 80 X 50599082 50599101 AAGAGATCCAGGAAGATGCT 58 50599675 50601825 CCCATAAGAACAATTGCAAGC 59 NA Rattus norvegicus 81 Mcoln1 ENSRNOG00000000975 ENSRNOT00000001290 2 1 1 80 12 2060553 2061348 GGTAGTCACTGACTGTATCCA 59 2061389 2061408 CCATCCAAGAAGTCCAAGTC 58 NA Rattus norvegicus 81 Sgca ENSRNOG00000003998 ENSRNOT00000005381 3 1 1 80 10 82778673 82778694 TCCACTATTGTCCTGCTATGAC 60 82777592 82778632 ACTGACTTGTCCACCAGAG 59 NA Rattus norvegicus 81 LOC100909856 ENSRNOG00000025724 ENSRNOT00000031928 3 1 1 80 5 142816442 142816460 AGCAAGTACTTCACCACAC 58 142816503 142819455 ATGATCACATCGAAATGGCT 58 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619,ENSRNOT00000084207,ENSRNOT00000055473 3 3 3 82 4 181145153 181145578 AAGCACAAAGCAGTTCTGC 60 181145624 181145642 GTCACAAAGGAGCCATCCT 60 NA Rattus norvegicus 81 Pla2g4d ENSRNOG00000037231 ENSRNOT00000056258 2 1 1 80 3 112044444 112044466 TATCTGGTATGACATCACCTCTG 59 112044259 112044404 GATGAGGGCTCCTTCTCTG 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863,ENSRNOT00000084155 3 2 2 80 6 41830649 41833065 GCTTCGGAAAGTCCTTCAG 59 41830587 41830608 CAATCTGTCTGCAGACTTACTG 59 NA Rattus norvegicus 81 Mrpl46 ENSRNOG00000018547 ENSRNOT00000067172 3 1 1 87 1 140475891 140475909 CGTTACACTCGCACAAGAC 59 140475105 140475841 TTTATCGGCTTCTGTTTCCC 58 NA Rattus norvegicus 81 AABR07052585.2 ENSRNOG00000023227 ENSRNOT00000068494 1 1 1 80 3 63567672 63567691 AAAGTACACAGTTAAGGCCA 57 63567101 63567629 TCTTCCACTAGAGGAAGCA 57 NA Rattus norvegicus 81 Lrp11 ENSRNOG00000014303 ENSRNOT00000019181 1 1 1 80 1 1720556 1720574 ACCCAGAGAAGAGGATCCA 59 1720616 1723339 CTGAGGAATTACTGTCTGGCT 60 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 3 2 2 80 5 36586202 36596525 TTTAGCAGGTTTCTGAAGGTG 59 36596565 36596585 GCAAGCGTCATTAAGAAAGTG 59 NA Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217 3 1 2 95 10 89908302 89908320 AGGCAGAATCGTGAGATCG 60 89904860 89908244 TCAGGATAGAGTCTTGCCCT 60 NA Rattus norvegicus 81 LOC100911963 ENSRNOG00000049277 ENSRNOT00000028265 2 1 1 113 1 88776032 88776681 AAGCCTCAGGACAAGAAGAG 60 88776849 88776867 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Olr287 ENSRNOG00000018956 ENSRNOT00000025635 2 1 1 60 1 212652593 212652614 CTACCATCATCAAGATTCCCTC 58 212652635 212652653 GATGAGCAGGTTGAGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gapdh ENSRNOG00000018630 ENSRNOT00000050443 1 1 1 82 4 157676830 157676848 AACTCCCATTCTTCCACCT 58 157676656 157676786 TTGTCATACCAGGAAATGAGC 58 NA Rattus norvegicus 81 Rnf185 ENSRNOG00000019325 ENSRNOT00000026134 3 1 1 82 14 83663868 83663888 TCGAATGCAACATATGTCTGG 59 83660748 83663824 ATGTAAACACGGCCAACAG 59 NA Rattus norvegicus 81 Efcab10 ENSRNOG00000010730 ENSRNOT00000014252 3 1 1 88 6 52705840 52705961 TGTGCAGTATAAAGAAGCCCT 60 52706009 52706029 TATCCAGAGTGATCGCATGTC 60 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283,ENSRNOT00000048418 3 2 2 80 10 90254855 90254959 CCCGCTTTAAGAATGACCG 59 90254793 90254812 TGAGCTTCTCCTTCTTCTCC 59 NA Rattus norvegicus 81 Olr1197 ENSRNOG00000048941 ENSRNOT00000049660 2 1 1 60 8 40263269 40263290 GCCTATTTGATGGGTTTCTCTG 60 40263308 40263329 AGGTCAGATTCATTAGGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_1740.1 ENSRNOG00000056063 ENSRNOT00000089825 3 1 1 60 3 173937514 173937533 GAGAAGCTGACTGAGTACTG 58 173937553 173937574 CAAGAGGACTATATGCAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1359290 ENSRNOG00000027271 ENSRNOT00000029782 1 1 1 80 10 95642772 95642792 ACCAAGTATCTGAAGGATGTC 57 95642834 95642945 AGCATTACTCTCGACTCCA 58 NA Rattus norvegicus 81 Mtmr12 ENSRNOG00000022929 ENSRNOT00000036633 2 1 1 80 2 62299432 62300323 ATACTAACATGGGCAGGGA 58 62300367 62300385 ACTGTACTGACCAATCCCA 58 NA Rattus norvegicus 81 Plekho2 ENSRNOG00000029242 ENSRNOT00000042633 1 1 1 80 8 71112879 71112897 TGAGTTTGTGGAAAGACCG 58 71104676 71112835 CACATTTCTGCTCGTCCTC 59 NA Rattus norvegicus 81 LOC679766 ENSRNOG00000033640 ENSRNOT00000049313 3 1 1 60 14 74095098 74095117 AGTTGTGAACCCAGAAACTC 58 74095057 74095076 TGAGTCCTCTTCATCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_1464.1 ENSRNOG00000026836 ENSRNOT00000036834 1 1 1 60 3 139945350 139945370 GTTGAAAGGCTAGATGTGACC 59 139945310 139945331 TTGTTGACTGAGTTTCACTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra2c ENSRNOG00000009299 ENSRNOT00000012322 2 1 1 60 14 80730616 80730635 ACCCGGTCATCTATACTGTC 58 80730575 80730595 AAGAGGATGTGCTTGAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 3 1 1 68 10 90930962 90930980 TTCATACCAGAGTGGCAGC 60 90931011 90931518 ACATTGTATACACGGCACCA 60 NA DesignNoJunction Rattus norvegicus 81 Rln3 ENSRNOG00000005911 ENSRNOT00000007775 3 1 1 213 19 25166496 25166514 CAGCTGATCATGGCAACTC 59 25164739 25164758 CTCCATCAGCGAAGAATTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Trim80 ENSRNOG00000028812 ENSRNOT00000065292 2 1 1 80 10 103997578 103997790 TGAGTTTCCTCTCGAAACTG 58 103997830 103997851 GTTTAACCTCATGGAGGATCTC 58 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 3 2 2 82 7 70618643 70618661 CGCTTCCTGGTAGACAGAG 60 70618835 70619087 AATTTGCCTTCTTGTCCTGG 59 NA Rattus norvegicus 81 LOC100911639 ENSRNOG00000042394 ENSRNOT00000066667 3 1 1 76 X 83598010 83598033 CTGGTGATCGTAGTTTACTAACAG 59 83601214 83601233 AATTGCTCTTTGCCAGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3bgrl ENSRNOG00000002280 ENSRNOT00000042827 2 1 1 84 X 80304028 80304046 TGATGCCTTCTTTGAAGCC 59 80304093 80309915 TTCTGCTTCCTTTGAACCAG 58 NA Rattus norvegicus 81 Cnih4 ENSRNOG00000003717 ENSRNOT00000004939 1 1 1 86 13 99476055 99478190 TAAACAAGTGGGTGATACCAG 58 99478238 99478256 GAAGGAAGATGACCCAGTG 58 NA Rattus norvegicus 81 Ankrd61 ENSRNOG00000001048 ENSRNOT00000001382 3 1 1 121 12 12756627 12756645 CATCAAGGAAGACTGCGAC 59 12756730 12757856 AGATAGGCTGTGTCTGCTG 59 NA Rattus norvegicus 81 Ndufb7 ENSRNOG00000028717 ENSRNOT00000035890 1 1 1 80 19 24704983 24705001 CAGCTTTCCCAACTTCGTG 60 24705045 24705229 ATGCGCTTCACATAGTCCT 59 NA Rattus norvegicus 81 Wdr43 ENSRNOG00000026316 ENSRNOT00000035320 1 1 1 80 6 23458213 23460193 CAAAGAAGTCTACAGACACTTCAC 60 23458156 23458176 CTCTCGTTAGGTCTGATGGTC 60 NA Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000081587 3 1 2 252 12 18936656 18936677 CAGGAGAAGGATTACATAACCA 57 18937641 18937660 ATCTTGCCTGGATTTCTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Usp38 ENSRNOG00000026880 ENSRNOT00000035084 3 1 1 80 19 30687686 30687706 ACTGGTCTTATTAACCTGGGA 58 30687747 30691475 TCTTCTGAACTCTGTAGCCA 58 NA Rattus norvegicus 81 Casp8ap2 ENSRNOG00000006487 ENSRNOT00000079656 2 1 1 80 5 47861978 47867411 TTGATGTCTGTCCTGCCTC 59 47867454 47867473 AAACAGTACTGTCCAACCCA 59 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237,ENSRNOT00000058663 3 2 2 80 15 51364423 51365052 ACAATTGTCACGTAGGTGGA 59 51365091 51365113 GCTGATTATTTAGGAGTCCACTG 59 NA Rattus norvegicus 81 Tecr ENSRNOG00000021808 ENSRNOT00000037608 1 1 1 86 19 24708287 24731878 ACTACGAGGTGGAGATTCG 59 24707667 24707685 TTTCAGAAATGGTGGCCTG 58 NA Rattus norvegicus 81 Rn60_5_0814.9 ENSRNOG00000051186 ENSRNOT00000076104 2 1 1 84 5 78002406 78003109 CTCGATGGGAAATCAAGATCC 59 78002342 78002361 ATTCACCCTTCCTGAAGACC 60 NA Rattus norvegicus 81 Rps15a ENSRNOG00000018320 ENSRNOT00000024678 2 1 1 80 1 187760804 187765291 GGAAGGTTGAACAAGTGTGG 59 187760743 187760763 CAGATTGTTCTGCCACTTCTC 59 NA Rattus norvegicus 81 Rn60_5_0814.33 ENSRNOG00000051052 ENSRNOT00000076229 1 1 1 80 5 77244025 77244044 CAGAGAAACGTGTACAAGGA 58 77243293 77243982 GGGATCTTGACTTCTGTCC 57 NA Rattus norvegicus 81 Olr1469 ENSRNOG00000047958 ENSRNOT00000072702 1 1 1 60 10 62361763 62361782 TGTTTCTCAGCAACTTGTCC 59 62361722 62361740 AACTTGGGCATCGTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000087984 1 1 2 93 18 40596207 40596282 AGCCAAAGAATAAAGGCAAAGG 60 40596330 40596354 CCATCCTCTTTAAACACTAACTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Cxcl12 ENSRNOG00000013589 ENSRNOT00000066670 1 1 1 80 4 149264118 149266239 TTCAGATTGTTGCAAGGCTG 60 149266281 149266300 CCAGGTACTCTTGGATCCAC 60 NA Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 1 2 2 80 7 76229183 76229202 TTCAGCATGTATGACCTGGA 59 76205504 76229142 CATCTTGTAGATTGCCTGCAC 60 NA Rattus norvegicus 81 Ttyh1 ENSRNOG00000032699 ENSRNOT00000068459 2 1 1 82 1 73746924 73747690 TTGATGACTTGGTGCTGGA 59 73746860 73746878 TGACAACACTTCCTCCAGG 59 NA Rattus norvegicus 81 AC130391.3 ENSRNOG00000053025 ENSRNOT00000085865 3 1 1 82 17 43680329 43680350 TCTCGTTTGTCAGAGGATACAG 60 43680393 43688849 AAGTAATCGTGCCAGGAGG 60 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 2 2 2 87 14 104274953 104274971 TTACTTTCCAAAGCCCTGC 58 104275017 104277350 GAGGTTGTTGAACCTTCTATAAGG 59 NA Rattus norvegicus 81 Epdr1 ENSRNOG00000060141 ENSRNOT00000085923 1 1 1 80 17 47419642 47420683 CAGCCAGATCCTATGAAACCT 60 47420722 47420743 AGTTCCTAATGAAGGTCTCCTG 59 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000083658 2 1 2 62 4 82126494 82126715 AATCAGGAAGCAGACCCAC 60 82126450 82126468 GCTGGAGAAGACGTCTCTG 60 NA DesignRelaxed Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000012067 3 1 5 140 2 192565924 192565943 CTTACCAAGAACAGCAGTGC 60 192566787 192566805 GAGGAGGACAAGACTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Plcb3 ENSRNOG00000021150 ENSRNOT00000028720 3 1 1 80 1 222215812 222215832 TTTGAGATGTCGTCCTTTGTG 59 222215532 222215773 TTTGTTGTATTCCACGAACTCC 59 NA Rattus norvegicus 81 Poll ENSRNOG00000016748 ENSRNOT00000023137 3 1 1 80 1 265296870 265296888 TGAGCTTGTGTCTACAGGA 58 265296619 265296829 GTTCATTCAAGGACCTCTTAGG 59 NA Rattus norvegicus 81 Fam216b ENSRNOG00000021943 ENSRNOT00000038579 2 1 1 80 15 60287318 60287338 CAAAGTGTTCCACGAATACCC 60 60285573 60287278 GCCTTGATTTAGGTCCTTCAG 59 NA Rattus norvegicus 81 Vom1r104 ENSRNOG00000031140 ENSRNOT00000049591 2 1 1 60 4 121811042 121811062 ATGTTCATTAGCAGTCACCTC 58 121811002 121811020 CATTCGTGGTCAAATTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1470 ENSRNOG00000055982 ENSRNOT00000090151 3 1 1 60 10 60220613 60220636 GTCATTGGTCTCTACTTATGTCCT 60 60220653 60220673 ACATGACAGTCTCCTTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 3 1 1 62 1 11965334 11968514 GTTGGTGGAGCGATTTGTC 60 11968538 11968558 ACTAGTTAGCATGCCAGAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Tubb4a ENSRNOG00000047505 ENSRNOT00000075767 2 1 1 80 9 9962597 9966740 TTGTGTTTGGTCAATCTGGA 58 9966783 9966801 GGACTGCATCCACTAACTC 58 NA Rattus norvegicus 81 Mas1 ENSRNOG00000014971 ENSRNOT00000020100 2 1 1 82 1 48094631 48103153 AGTTGGTTCCAGGAGATGC 60 48103195 48103217 GTATCATCAGTCAGTAACATGGG 59 NA InUTR Rattus norvegicus 81 Rn60_5_0814.25 ENSRNOG00000051326 ENSRNOT00000077037 2 1 1 60 5 77475057 77475078 ATTTGAATGTACTGAGTGTGGG 59 77475018 77475039 CTGATGGATAACTAGGTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000084903 3 1 2 75 6 29239011 29239029 TATGAGTTCACCGACCCAG 59 29236866 29236884 GATAACATCGTGTGGTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Tspo2 ENSRNOG00000050521 ENSRNOT00000073130 3 1 1 96 9 14513192 14513884 CTACTCTGTCATGGGCTACG 60 14513943 14513961 GAAAGAGTAGAGGCCGAGG 59 NA Rattus norvegicus 81 Ddt ENSRNOG00000001239 ENSRNOT00000001664 3 1 1 108 20 13827714 13827732 CTCTTCCATCGGTGTTGTG 59 13827802 13829380 GATAATGATCCTGTCCTGGTC 58 NA Rattus norvegicus 81 Ankrd52 ENSRNOG00000030597 ENSRNOT00000047462 3 1 1 80 7 2801229 2801322 GCTTCTTTCCTCAGGTCAG 58 2801366 2801384 TTGATGTCAAACCCAGCAG 58 NA Rattus norvegicus 81 LOC100360690 ENSRNOG00000049161 ENSRNOT00000074115 1 1 1 80 1 252155745 252155766 GAATCAGATCAGGCTTATTCCA 58 252154840 252155707 GAGGAGTAGACTGATTGTAGTG 58 NA Rattus norvegicus 81 Nlrp4b ENSRNOG00000027705 ENSRNOT00000035435 3 1 1 80 1 73949306 73949326 ATGCCTATGAGATCATTGACC 58 73948441 73949266 ACAGTTGGCTAACATGATAGC 59 NA Rattus norvegicus 81 RGD1308147 ENSRNOG00000015523 ENSRNOT00000020794 1 1 1 91 17 53084243 53084261 ATATGCCGTCCTTCCACTC 59 53082506 53084188 GAATCCACAGCATGTCCCT 60 NA InUTR Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 3 2 2 80 6 36980007 36984561 CCAACAATTTAGAAGGTGTCTG 58 36984602 36984620 TTTCCACAATAAGCACGCT 58 NA Rattus norvegicus 81 Rn60_15_0537.1 ENSRNOG00000048743 ENSRNOT00000072095 2 1 1 60 15 49953114 49953133 CCCATTTGTCCTTTGATCCA 58 49953154 49953174 ACCATTTCTGAGTTGACACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0537.1 ENSRNOG00000048743 ENSRNOT00000072095 3 1 1 60 15 49953207 49953228 GTCCATTTGCTACCTTTAAGAG 57 49953246 49953267 AACTTAATTCCTGTCCACTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M3-2-ps ENSRNOG00000060503 ENSRNOT00000082075 1 1 1 63 20 1833014 1833032 ACTCCAACCAGAGTGAAGG 59 1832754 1832772 AGAAGTCTCATGTCTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-M3-2-ps ENSRNOG00000060503 ENSRNOT00000082075 2 1 1 64 20 1833014 1833032 ACTCCAACCAGAGTGAAGG 59 1832753 1832771 AAGAAGTCTCATGTCTGGC 57 NA DesignNoJunction Rattus norvegicus 81 Chgb ENSRNOG00000021269 ENSRNOT00000028892 1 1 1 80 3 125433417 125438868 CAAGTCCTGAGGAAGAGTGG 60 125438909 125438929 CAACCGTACTTCAAACTTCGA 59 NA Rattus norvegicus 81 Olr397 ENSRNOG00000046032 ENSRNOT00000041240 1 1 1 60 3 15788799 15788818 ACTGTGTCTGAGTTCATCCT 58 15788841 15788859 AGTATGCAGCTTGGTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr397 ENSRNOG00000046032 ENSRNOT00000041240 2 1 1 60 3 15788784 15788802 AGGGACAATGAGAGCACTG 59 15788825 15788844 CCTCTACTGGAATGGGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs3 ENSRNOG00000009539 ENSRNOT00000012753 2 1 1 80 7 110121078 110142559 GACCTATGGAGAGTATGACTATGAC 60 110142595 110142615 TAGCTGTTGTCATAGGAGTCG 59 NA Rattus norvegicus 81 Pdlim2 ENSRNOG00000008543 ENSRNOT00000011663 1 1 1 94 15 51853820 51853838 GACTGTGAATGTGGTGGGA 60 51853054 51853762 TCTCTGTGACCTTCGTCAC 59 NA Rattus norvegicus 81 Cd300e ENSRNOG00000036726 ENSRNOT00000029092 2 1 1 80 10 103601174 103602287 TCTTCCAACTATGGTCTCTGC 60 103601114 103601132 GCATGCTCAGAAACAGAGG 59 NA Rattus norvegicus 81 Aig1 ENSRNOG00000010753 ENSRNOT00000046539 3 1 1 80 1 8038496 8038514 TACAAGGCCATCGAAATGC 59 7999771 8038456 CTGGATAACCAGATCAATGAAGG 59 NA Rattus norvegicus 81 Rn60_7_1409.3 ENSRNOG00000046625 ENSRNOT00000074411 1 1 1 60 7 143052141 143052161 CTTGACAAAGCTACATCTGAC 57 143052101 143052122 GGAGTAATAAGCTGTAGTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305537 ENSRNOG00000045696 ENSRNOT00000073995 2 1 1 90 10 1470209 1470232 ATTCCTCCTATAAACGGAGTG 57 1470285 1470303 TTTGGGTGTTTGTCTCTGG 58 NA Rattus norvegicus 81 Ceacam3 ENSRNOG00000027607 ENSRNOT00000023663 2 1 1 80 1 79133344 79134098 GCACATCCACATATACAAGCC 60 79134140 79134158 ACCACAGAGCTCTTCACTC 59 NA Rattus norvegicus 81 Rn60_14_0459.2 ENSRNOG00000051132 ENSRNOT00000073146 3 1 1 60 14 46070109 46070128 TAAGGAGCATCTGCCTACTG 59 46070068 46070086 ACAGATGAAGTCGTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr190 ENSRNOG00000017357 ENSRNOT00000023307 1 1 1 60 1 169966777 169966798 CACAGTCAACCGTCTTTATCAG 59 169966818 169966837 AATTAGGTCAGATCCCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr198 ENSRNOG00000049227 ENSRNOT00000041317 1 1 1 60 1 170109436 170109460 TCCTTATCTTGATCACCATCTACTG 60 170109477 170109496 AGAAACTGGTACATTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cryge ENSRNOG00000032869 ENSRNOT00000041632 1 1 1 82 9 72933671 72933689 GTACCCTGACTACCAGCAG 59 72933735 72935147 TTCTGTGAGAGCTGGAGTG 59 NA Rattus norvegicus 81 Adap2 ENSRNOG00000037148 ENSRNOT00000056273 3 1 1 80 10 67522475 67524106 GTCCAAAGCATAGAGAACCC 58 67524146 67524167 GGTTCTTATAATACAGCAGCCT 58 NA Rattus norvegicus 81 Babam1 ENSRNOG00000017071 ENSRNOT00000022938 1 1 1 80 16 19795024 19795042 CTGCCTGTACGACCTAGAG 59 19796422 19796944 TCAGTCTTCTGCTGGATGAG 59 NA Rattus norvegicus 81 Iyd ENSRNOG00000016286 ENSRNOT00000021895 3 1 1 85 1 40092605 40093240 ATCAAAGCAGCAGGAACAG 59 40093288 40093307 TTATGCTTCATGTCTGGGTC 58 NA Rattus norvegicus 81 LOC257643 ENSRNOG00000004858 ENSRNOT00000006555 1 1 1 66 3 143112415 143112433 ATTGCCCATTGCTACAAGG 59 143115908 143115926 GGTCGTGCATCTACTTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Aqp5 ENSRNOG00000051970 ENSRNOT00000084911 1 1 1 101 7 141251207 141251883 CTCTCACTGGGTCTTCTGG 59 141251948 141251966 CGATCATGGAGGCTCAGAG 60 NA Rattus norvegicus 81 Kctd19 ENSRNOG00000016760 ENSRNOT00000022497 2 1 1 80 19 37342604 37343141 CAGAGATGCAAAGGAAACCA 59 37342543 37342561 TTAGCCTTGTTCCAGGGAG 59 NA Rattus norvegicus 81 Rn60_X_0637.4 ENSRNOG00000051319 ENSRNOT00000076935 3 1 1 82 X 63107986 63108004 TGAAAGAGGGCCAGAAAGG 60 63107688 63107942 TCTTGGATCCAGTGTCATGTC 60 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 3 4 4 81 5 116637619 116652350 TAAGAGTGTCACAAACACCA 57 116652391 116652412 CTGTAGTATGAGGAACTTTCCA 57 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 3 2 2 87 17 55127084 55127103 GTGAACTGCAGTCAGAAGAC 59 55127153 55128486 TTGGTTTCCCTCTCCAGTG 59 NA Rattus norvegicus 81 Olr12 ENSRNOG00000033009 ENSRNOT00000047063 3 1 1 60 1 149578504 149578524 ATCTACACCTACATTCGACCT 58 149578464 149578485 CAGCTACTACCTTGTCTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC105567 ENSRNOG00000038955 ENSRNOT00000040116 1 1 1 93 18 55685628 55685648 CGTGAAGAGACTAGAGAACAC 58 55685703 55702890 AACAAAGGCCCAGAAACTC 58 NA InUTR Rattus norvegicus 81 C1ql4 ENSRNOG00000060020 ENSRNOT00000081784 1 1 1 83 7 140767913 140770125 ATGAAGAACGGACAGGTCC 59 140767848 140767866 CAGAATGACGCTGTTGCTG 60 NA Rattus norvegicus 81 Kcnj4 ENSRNOG00000013869 ENSRNOT00000018564 2 1 1 135 7 120744048 120744067 TAGAGGTTTCAACCCTGCAG 60 120719363 120719381 TTCTTCTTGACGAAGCGGT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100363675 ENSRNOG00000011119 ENSRNOT00000014787 2 1 1 80 16 894189 894209 TGTGTCTATGGACTAGAGCTG 59 890006 894147 CCGAGATGTTGCAACTCTG 59 NA Rattus norvegicus 81 RGD1566265 ENSRNOG00000002323 ENSRNOT00000003188 1 1 1 80 X 78871926 78871947 AATATGGAACTACCACAGGGTC 60 78871458 78871887 TCTCTGTGACAGTTCATCCTG 60 NA Rattus norvegicus 81 Pcdh12 ENSRNOG00000019265 ENSRNOT00000026065 1 1 1 80 18 31424743 31427907 CCTCCTGTTCAGCAAATCTC 59 31424682 31424700 ATTTCCTCGGTGGTTTGGT 60 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000078880 2 1 7 60 20 2517342 2517363 TCTAGATTTCAAACCGTCAGAG 58 2517383 2517402 CACGTTCTCCTTAGAAAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd22 ENSRNOG00000019190 ENSRNOT00000026093 3 1 1 80 1 252448612 252461197 ATATTCTGAGCCCATCTGCC 60 252448551 252448572 TAATGGTTGCTTTCTTTCACCC 60 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000076953,ENSRNOT00000037446 1 2 2 80 4 7159766 7161555 CCTGGTATCCTTGAGTGTG 57 7161598 7161617 GGTCTCCTCTTCATCTTCAG 57 NA Rattus norvegicus 81 Hoxb8 ENSRNOG00000007585 ENSRNOT00000009986 3 1 1 246 10 84131744 84131762 AACTTCTACGGCTACGACC 59 84132751 84132769 GGAACTCCTTCTCCAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Ska3 ENSRNOG00000021847 ENSRNOT00000032723 1 1 1 80 15 38091432 38092980 GGATTCAGCATGTGAGCAC 59 38091370 38091388 TTCACACCAGGCTCTTGAG 60 NA Rattus norvegicus 81 Rn60_2_1398.1 ENSRNOG00000051202 ENSRNOT00000076371 1 1 1 60 2 120050396 120050414 GCAGAAACACAGCAATGGA 59 120050435 120050456 TTTCTTTGCCCGTTCTAATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdelr1 ENSRNOG00000021082 ENSRNOT00000028627 1 1 1 80 1 101860550 101860568 GGAGTTCCTCGTTGTTCCT 59 101860611 101868294 AAAGTCCAGAGGATCTCCAG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 1 4 4 80 10 1427606 1427624 GGACACAACATGCTCTTGG 59 1419382 1427566 CTTAAACTCATTCAGGTCCACAG 60 NA Rattus norvegicus 81 Rn60_5_0814.29 ENSRNOG00000051087 ENSRNOT00000076381 1 1 1 80 5 77364380 77364399 GGATCCTGGGTAGAGAAACG 60 77363614 77364340 GGATCTTGATTTCCCATTGAGG 59 NA Rattus norvegicus 81 Rn60_5_0814.29 ENSRNOG00000051087 ENSRNOT00000076381 2 1 1 80 5 77364379 77364398 GATCCTGGGTAGAGAAACGT 59 77363613 77364339 GGGATCTTGATTTCCCATTGAG 59 NA Rattus norvegicus 81 Rn60_5_0814.29 ENSRNOG00000051087 ENSRNOT00000076381 3 1 1 81 5 77364380 77364399 GGATCCTGGGTAGAGAAACG 60 77363613 77364339 GGGATCTTGATTTCCCATTGAG 59 NA Rattus norvegicus 81 Heg1 ENSRNOG00000001793 ENSRNOT00000002443 3 1 1 80 11 70276273 70276294 CAATACTCAGGGATCTTTCACC 59 70271528 70276233 AAGGTTCTAACCAGACTGCA 59 NA Rattus norvegicus 81 LOC680161 ENSRNOG00000028826 ENSRNOT00000047694 2 1 1 60 4 147121660 147121678 TCCCAACTAAGAGACCACC 58 147121618 147121636 TCCACCAAAGTGGTGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.1 ENSRNOG00000051274 ENSRNOT00000076406 1 1 1 60 X 62926254 62926274 CTCTGGAACATAGTGAGGAGG 59 62926214 62926232 CAGATGTCAGGGTCATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col8a2 ENSRNOG00000010841 ENSRNOT00000014388 3 1 1 83 5 144330607 144330625 GGTAAAGTATGTGCAGCCC 59 144330671 144331270 AGAGGCATTTCCAGGTACTG 60 NA Rattus norvegicus 81 Vwc2l ENSRNOG00000027400 ENSRNOT00000033459 2 1 1 80 9 77837097 77837117 ACTTCTATTGGTCATCCCTGG 59 77837158 77837318 ACAGGTCCATCTTCATCAGC 60 NA Rattus norvegicus 81 Rn60_6_1181.1 ENSRNOG00000027960 ENSRNOT00000039048 1 1 1 87 6 107572771 107575371 CCCAAGGACACCTTAGGTC 59 107572702 107572720 GAAAGAGGCCATGGAGAGG 60 NA Rattus norvegicus 81 Rnaseh2c ENSRNOG00000020700 ENSRNOT00000028097 3 1 1 82 1 220967081 220967099 GGGAAGCTGAACTTCTCAG 58 220967145 220967238 ATAAAGCGGTCAAAGTCCC 58 NA Rattus norvegicus 81 Phb ENSRNOG00000046799 ENSRNOT00000075733 1 1 1 80 10 83480064 83480085 ACAGAAGCCAATCATCTTTGAC 59 83480125 83483452 ACATTCTGCAAGTCTTTGCT 58 NA Rattus norvegicus 81 Tcf23 ENSRNOG00000025736 ENSRNOT00000009090 2 1 1 96 6 26766631 26769470 CCCTCTTAAGAAGTGGCCC 60 26766553 26766571 GATGGTTGTGGTGGAATCG 59 NA Rattus norvegicus 81 Tcf23 ENSRNOG00000025736 ENSRNOT00000009090 3 1 1 97 6 26766632 26769471 ACCCTCTTAAGAAGTGGCC 59 26766553 26766571 GATGGTTGTGGTGGAATCG 59 NA Rattus norvegicus 81 Scgb1d2 ENSRNOG00000020294 ENSRNOT00000027492 2 1 1 88 1 225593148 225594887 CTATGAAGCTAATGCTAGCCA 58 225593080 225593100 CCTTCTTCAGTTCTTCCTCAC 58 NA Rattus norvegicus 81 Srd5a2 ENSRNOG00000027042 ENSRNOT00000008983 1 1 1 80 6 25292361 25292381 AGCCTACTACCTGGTTTACTG 59 25288086 25292319 AACAGGAAGACACCAAAGC 58 NA Rattus norvegicus 81 LOC302192 ENSRNOG00000049503 ENSRNOT00000051066 2 1 1 86 9 463451 463470 AAGTGTCAATTCGAGAGGGA 59 462042 463402 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Olr1144 ENSRNOG00000030753 ENSRNOT00000040848 3 1 1 60 8 19772834 19772854 GAGGTACTTGGTCATCATGGA 59 19772794 19772813 TAGCAGGGACAATAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC316935 ENSRNOG00000046132 ENSRNOT00000043153 2 1 1 87 16 45821 45842 CAGAAGTGTAAATTCGAGAGGG 59 44787 45773 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Rn60_2_0457.1 ENSRNOG00000018068 ENSRNOT00000024327 1 1 1 83 2 26471258 26471276 AGAAGATCACGCATACCGG 60 26471385 26471404 CATTCACCTCTTTCTGACGA 58 NA DesignNoJunction Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256,ENSRNOT00000012655 3 2 2 80 4 84439760 84439778 CTGGTGTGAATACTGTGCC 59 84439819 84443581 TGTACGTTTAACCCACAATCTG 59 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 1 2 2 80 5 19508455 19510173 CTACTGTGAAGGTGTGGTC 58 19508393 19508411 CAAGCTCAGCCAGTAAGTC 58 NA Rattus norvegicus 81 LOC100910951 ENSRNOG00000046980 ENSRNOT00000044624 2 1 1 81 10 11376798 11376821 ATTGGGTATCATATCTCTGGAAGG 60 11376861 11384056 AGTGACCAGGTCTGAATGG 59 NA Rattus norvegicus 81 Rarres2 ENSRNOG00000024705 ENSRNOT00000033918 1 1 1 81 4 78208029 78208234 ATGACCTGTTCTTCTCAGCT 59 78207967 78207985 TTCCAGTCCTTCTTCAGGC 59 NA Rattus norvegicus 81 Olr392 ENSRNOG00000018112 ENSRNOT00000024351 2 1 1 60 2 209581759 209581777 TGACACCTATGTTCAACCC 57 209581717 209581737 AAAGCTCCATGAATGTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269,ENSRNOT00000009084 1 2 2 80 7 29495057 29497809 TCATCATTGTGTTTGAGCACC 60 29494997 29495017 TTAGATCTTTCGGGAGGTCTG 59 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189,ENSRNOT00000036205 1 2 2 80 10 11810930 11810948 AGGCAGAGCTCTTTAGCAC 60 11811171 11822706 GAGCCAAGACTGTACCTGG 60 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 3 1 1 84 16 2004612 2036290 TTAAGGATTGCCCTCAGGC 60 2004546 2004564 CACTTGTACTCGCCAAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076675,ENSRNOT00000076539,ENSRNOT00000076320 3 4 5 60 13 77942320 77942338 GACTGGAGAATGTTGCGTG 59 77942359 77942380 GCTCATCTGCATATTCATAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem64 ENSRNOG00000007426 ENSRNOT00000009759 1 1 1 82 5 28865059 28865077 ACGGACGATGGAAGATGTC 60 28865120 28867054 GGCCTATGCTGATAACAATCTG 59 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994,ENSRNOT00000039354 3 2 2 82 19 25886403 25886422 CCACATCACATTGGAGTCAC 59 25841727 25886358 TCTGATTGTCCGGATTCCG 60 NA Rattus norvegicus 81 Fam208a ENSRNOG00000014750 ENSRNOT00000074069 1 1 1 80 16 3085788 3088133 ATATGAAGAACCTCCACAGTC 57 3088175 3088193 GTACTGCATGCATCTTCCT 58 NA Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 3 1 1 94 10 13073543 13073675 TCTTGTCAACACCCTTGGG 60 13073467 13073485 GTGCAGTGTAACCCATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921,ENSRNOT00000003249 2 2 2 80 13 103287903 103289472 CAGGAAACAAGATTATCCAGC 57 103289511 103289532 TATCCCATTTCTTACATCCAGG 58 NA Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000090815 3 1 2 81 4 117583559 117584153 TTCTGGAGGCATCACTACAG 59 117583497 117583519 CTGATACTTGCATCAGTATCCAG 59 NA Rattus norvegicus 81 Thap3 ENSRNOG00000026840 ENSRNOT00000055487 1 1 1 80 5 169156257 169156275 CTCAGGGAGGAACATGGAC 60 169155938 169156213 TCTGGTAACACCTGTTGCA 59 NA Rattus norvegicus 81 Vom2r23 ENSRNOG00000048963 ENSRNOT00000073415 2 1 1 81 8 4044595 4044613 CAAGGAAGGCAGTGTTGTC 59 4044653 4049558 CTGATCCATATCTGTCTCATTGGA 60 NA Rattus norvegicus 81 Fn3krp ENSRNOG00000036660 ENSRNOT00000054916 2 1 1 82 10 110621352 110621370 CCAGATGGACATGGTGGAG 60 110621415 110621680 GGTCAGGAATCTTCAACTGC 59 NA Rattus norvegicus 81 Nat8b ENSRNOG00000015851 ENSRNOT00000021243 1 1 1 93 4 117606860 117607319 GTGTAGTAGCGGGACTCAG 59 117606785 117606805 CGCAGATGTGATAAGAAACCA 59 NA InUTR Rattus norvegicus 81 Brca2 ENSRNOG00000001111 ENSRNOT00000001475 2 1 1 80 12 524502 524523 AAAGACAGACGATTGTTCACAC 60 524561 525183 TTGCCTTTCTTTACTTGAGCAG 60 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 2 2 2 80 13 44507344 44508911 TACCAACAGTTTGCATCTTACG 59 44508949 44508970 CAAGCCAAATGAATGCATACAC 59 NA Rattus norvegicus 81 Wdr73 ENSRNOG00000010664 ENSRNOT00000032294 2 1 1 80 1 142719060 142719078 GGACTTCAAAGTACGCCAC 59 142718463 142719016 ACCAGCAACCTGGTATCTG 59 NA Rattus norvegicus 81 Zfp37 ENSRNOG00000046629 ENSRNOT00000018209 2 1 1 90 5 77293980 77294661 CTCGATGGGAAATCAAGATCC 59 77293910 77293929 GTTCTTATTCGCCCTCACTG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078094 3 1 11 82 6 99041449 99042093 CTTCAGAAAGGAAGCTGAACAG 60 99042135 99042154 CTTCACGGAGCTTTCTTCTG 59 NA Rattus norvegicus 81 Olr341 ENSRNOG00000050798 ENSRNOT00000072071 1 1 1 60 1 229765036 229765054 CATCTACACCATCACCCTG 57 229764994 229765013 AGAGTCCAAGACAATCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696,ENSRNOT00000038798 1 2 2 80 1 102114214 102114232 GTGTACGCTATGACAGCTC 58 102113350 102114171 AGATCCCAATCTTCTGTCCT 58 NA Rattus norvegicus 81 Baiap2l1 ENSRNOG00000001007 ENSRNOT00000060843 3 1 1 80 12 12306352 12308248 ACAACTCCACAGCAAACAC 59 12308291 12308310 TCTTCATCATGTTCAGCCCA 60 NA Rattus norvegicus 81 Tnfrsf12a ENSRNOG00000003546 ENSRNOT00000004842 2 1 1 67 10 12996623 12996641 GGTTTCCTGGTCTGGAGAC 60 12996482 12996500 CCACCAGTCTCCTCTATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pea15 ENSRNOG00000046996 ENSRNOT00000070812 2 1 1 80 13 90583281 90583303 GAAGAGTGAAGAGATCACTACAG 58 90582040 90583242 GAGAGGTTGTCTTTGTCCAG 58 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174,ENSRNOT00000088570 1 2 2 80 X 84767047 84767069 AGCTATTCCTCTTAGTAGCAAGG 60 84753693 84767009 TCTTTGTGCAAATCCTGACTG 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000075993,ENSRNOT00000076766 2 2 6 60 15 36972822 36972841 GCATAGATGCATTTAGCCCA 59 36972781 36972800 ATACCCATCATTGGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map1s ENSRNOG00000018781 ENSRNOT00000025385 3 1 1 83 16 20274374 20275224 CAGCATAGTGAAAGGGCAG 59 20274309 20274328 GACTTGTCTGAGGGATTCAG 58 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060,ENSRNOT00000018515 3 2 2 80 14 81828427 81829578 CACATCAAGAAACTGGAGGA 58 81829621 81829639 CTTTAGGAAGCGATGCTCC 58 NA Rattus norvegicus 81 LOC100362532 ENSRNOG00000050269 ENSRNOT00000075170 3 1 1 60 4 161309097 161309115 AGTTGAGAAAGCATTGGGT 57 161309055 161309075 GAGCTTGAATCCCATACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr825 ENSRNOG00000048952 ENSRNOT00000050694 3 1 1 60 4 148544961 148544981 GAATGGCTAATGACAGAGGAG 58 148545003 148545021 CCTCAAGGATGAACTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngfrap1 ENSRNOG00000028822 ENSRNOT00000045997 1 1 1 78 X 106823953 106823971 ATTGAGAGGAGGACTACGC 59 106824416 106824434 TTCCTGTCCATTCTGCAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dkk2 ENSRNOG00000011360 ENSRNOT00000015116 3 1 1 81 2 237236429 237236449 GGTCACTATTCCAACCATGAC 59 237236488 237239077 CTTCATGTCCCTTTATATGAGGC 59 NA Rattus norvegicus 81 Uba5 ENSRNOG00000011027 ENSRNOT00000015240 3 1 1 80 8 112581551 112581811 AATACAAGAAGAGGGCACCA 59 112581490 112581510 CGTTGTCCTCATGAACTACCT 60 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560,ENSRNOT00000027849 3 2 2 80 1 101054045 101054064 CTGCTCTTAGTCTACATGGG 57 101053662 101054003 GAAGATGTCAAGAACTTGGC 57 NA Rattus norvegicus 81 Pam16 ENSRNOG00000004608 ENSRNOT00000006314 3 1 1 106 10 11153271 11153289 CTCTAAGCTGAGCCCTGAG 59 11153610 11153789 CACGGACAACCTTTGACTG 59 NA Rattus norvegicus 81 Rn60_5_0814.17 ENSRNOG00000051345 ENSRNOT00000076612 1 1 1 60 5 77794969 77794989 AAATCTAGATGTGCTGCTGTG 59 77794929 77794948 TTCTCCTGTCTCAACTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem126b ENSRNOG00000022732 ENSRNOT00000038279 2 1 1 80 1 156267776 156273884 GCTTAGCAGTTAAGTATCACAC 57 156273923 156273943 CAGTTTGACAAAGGAGTAACC 57 NA Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 2 2 2 83 12 19434587 19434606 TTTAGTGGGTCACTCGAGTG 60 19433821 19434541 TGGTCAGTCACATTCCCAG 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509,ENSRNOT00000065300 3 2 2 80 3 8936304 8936323 CTCTGAGTGGTATCTCCTCC 58 8936364 8937000 AATTGACCATTACCATCGAGG 58 NA Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 3 2 2 80 4 78451463 78451481 AGATTGTTGTGTCTGTGGC 58 78451045 78451421 CTTCATCATTCAAGACCTGGG 59 NA Rattus norvegicus 81 Gtpbp10 ENSRNOG00000007098 ENSRNOT00000009340 3 1 1 80 4 25639750 25644102 CCTAGTAGGATTCCCAAATGCT 60 25644141 25644161 GCATAACTTGCAATCACAGGT 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 2 4 6 80 14 44526462 44526480 GGGTCTCTGGTTGAAATCC 58 44526524 44526856 AGAACAAGCAACACCTGTC 58 NA Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000005644,ENSRNOT00000035894 2 2 2 80 10 82867056 82868135 CTCAGTTTGATGAATCATCGAC 58 82866997 82867016 ATCCTTCACAGTCTTCATGG 57 NA Rattus norvegicus 81 Ccdc183 ENSRNOG00000017044 ENSRNOT00000061874 1 1 1 80 3 2833049 2833655 AGGACATGATAGAAACCTTCCA 59 2832990 2833009 GGCCCTGTTTCTTTATCTCC 58 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000072584 2 1 2 80 1 225828089 225828108 GTGAAGCAATTCAAGCAGTG 58 225825559 225828049 AAATATTGCCTCCATCATCACG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000068476,ENSRNOT00000067661 3 3 3 80 1 46896731 46898389 TGTAAGTCCACGGTTTCAG 57 46898433 46898451 AAGCACTGTACAGTGTTGG 58 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551,ENSRNOT00000066879 3 2 4 81 2 78263544 78265213 GAAGACGACGAAGATTGGGA 60 78265257 78265275 CTGCATCCTCTTCCTCCAC 60 NA Rattus norvegicus 81 Tas2r125 ENSRNOG00000021397 ENSRNOT00000029713 3 1 1 60 4 167068442 167068463 AGACTTAGCAAAGTGGTTTCAG 59 167068403 167068424 TATTCATAAGCAAGAGGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps3 ENSRNOG00000017418 ENSRNOT00000023935 3 1 1 81 1 164440110 164440129 GCTACTCTGGAGTTGAAGTC 58 164439836 164440068 CCAAGAACATTCTGTGTTCTG 58 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 3 2 2 80 12 1686675 1687345 TTCTTCCGACATGTGGTCC 60 1686613 1686632 TTAGACAGGCCTTGGTAAGG 59 NA Rattus norvegicus 81 AABR07029559.1 ENSRNOG00000052567 ENSRNOT00000084710 2 1 1 89 10 34016129 34016151 GCACTAAGGATAGAGAATGAACC 59 34015210 34016081 GTCTAATCAGGAAGTCCGGT 59 NA InUTR Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000039335 2 1 2 80 10 43620627 43626630 GTCAGACAAGATGGTGAAACC 59 43626672 43626690 CTATCCTGGATGGCAGCTC 60 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242,ENSRNOT00000009552 1 2 2 80 3 92916948 92918783 CTGTTACTCTTAAGCAAATGCC 58 92916889 92916907 AAATGTCAACAGAGGGCAG 58 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340,ENSRNOT00000030324 1 2 2 80 1 219379109 219379202 CTAGTCCCAGGAGTCTACCA 60 219379245 219379263 GGGCAGGTAGAAGAACTGG 60 NA Rattus norvegicus 81 Syce1l ENSRNOG00000031097 ENSRNOT00000045250 2 1 1 80 19 45956273 45956411 CAGAGAATTGTGGTCTGAAGAC 59 45956450 45956470 CTCTGTCATTCTGAGCTTCTG 59 NA Rattus norvegicus 81 AABR07012277.1 ENSRNOG00000037341 ENSRNOT00000056498 3 1 1 198 2 192148061 192148079 AAGTGTCCTGAGCCTTGTC 60 192148241 192148259 TCTTGGGTGGACACTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink13 ENSRNOG00000038793 ENSRNOT00000059276 3 1 1 69 18 57940847 57940866 ACAGGATCATCTTCTCCCTC 58 57936540 57940817 TGTGATCTGATAAGTGCTGCT 60 NA DesignRelaxed Rattus norvegicus 81 Rn60_4_0539.1 ENSRNOG00000053425 ENSRNOT00000089519 3 1 1 60 4 54121283 54121301 CAGCCAAAGCTGTAGTGAC 59 54121324 54121343 ATTGCACCCATTCTAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm7sf3 ENSRNOG00000001817 ENSRNOT00000002486 2 1 1 80 4 180933353 180933373 TGGTACTTGGAGACAGAAGAC 59 180931797 180933314 AGGAATGGGATCTCTTTCTGAG 59 NA Rattus norvegicus 81 Alox5ap ENSRNOG00000000907 ENSRNOT00000001207 3 1 1 101 12 6871253 6871271 CAAGGTGGAGCTTGAAAGC 60 6863839 6871188 TCTACGCAGTTCTGGTTGG 60 NA Rattus norvegicus 81 Dynlrb2 ENSRNOG00000012450 ENSRNOT00000016713 2 1 1 81 19 49019905 49019923 TGGAGGAAACCCTCAAGAG 59 49019968 49027296 CGGATTGGAATGCCTTCTG 59 NA Rattus norvegicus 81 Pigx ENSRNOG00000033623 ENSRNOT00000043365 2 1 1 80 11 71950268 71950289 CACATAAGAAGGATGGAGACAC 59 71950328 71953316 AAATTGGGAACTCTTGGTCAC 59 NA Rattus norvegicus 81 Svs1 ENSRNOG00000008714 ENSRNOT00000011588 3 1 1 85 4 78643471 78643489 ACAACCAGAACCATCACTG 58 78643538 78643814 CACCAAGTCCTCATCTTCG 58 NA Rattus norvegicus 81 RGD1565131 ENSRNOG00000025212 ENSRNOT00000038919 1 1 1 80 12 12203939 12204072 AGTCTGTTGCTGAGGAGAG 59 12204116 12204134 TGGAATCTTCACCAACCCA 59 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 3 2 2 80 15 10463901 10463919 TGGGTTATGGACTCTCAGG 58 10463963 10464985 CAGCCATGCATCTTAAAGC 57 NA Rattus norvegicus 81 Hbp1 ENSRNOG00000008927 ENSRNOT00000012004 2 1 1 80 6 51244751 51248857 ACATGGAGCTTGATGACCT 59 51244689 51244709 CTGAACTGAGCTGGTATATGG 58 NA Rattus norvegicus 81 Rlbp1 ENSRNOG00000016897 ENSRNOT00000022962 1 1 1 80 1 141103419 141103437 ACAAGTATGGTCGAGTGGT 58 141100455 141103378 CCTGTAAGATCTCATCAAAGGT 58 NA Rattus norvegicus 81 Olr124 ENSRNOG00000016018 ENSRNOT00000021429 1 1 1 60 1 168852771 168852791 ATCCTTTACCTGCTAGTCTCC 59 168852731 168852752 GTTTGGTCTTAACACCATACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361139 ENSRNOG00000037661 ENSRNOT00000057140 1 1 1 113 X 107613309 107613330 CAAGATGAGTGATAAACCAGAC 57 107612723 107613235 TGCTGGATAGTTTCCTTCG 57 NA InUTR Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 2 2 2 80 3 93632297 93635545 ACAATGGATGACCAGGGTC 59 93635589 93635607 ATCGATGAGCATCTGGACC 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897,ENSRNOT00000039954 2 2 2 80 10 65768935 65769132 ACTTGTTCAAGGGTAGTCAG 57 65769175 65769193 AGCCTTCAGAGATGTTTCG 58 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232,ENSRNOT00000051009 1 2 2 80 2 233617249 233617268 CTACCCAGACATGTCCACTC 60 233617311 233619809 TTCTTGAACCAAACCCGGA 60 NA Rattus norvegicus 81 Tas2r113 ENSRNOG00000030752 ENSRNOT00000050409 3 1 1 60 4 167088224 167088243 AAATGCTGTTCTTCCTGCTC 59 167088183 167088203 CCACCTCAATCTACAGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mta2 ENSRNOG00000019913 ENSRNOT00000027141 2 1 1 80 1 225142427 225142725 CTCAATAAGACTGCAAACGGA 59 225142763 225142785 GTTGAGGCTACTAGAAATATCCC 58 NA Rattus norvegicus 81 Ufc1 ENSRNOG00000003706 ENSRNOT00000004938 3 1 1 113 13 89663397 89668158 GTCCCTTATCCGGTATGTCG 60 89663115 89663133 AAGTCGTGGATGTACCAGC 60 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989,ENSRNOT00000073865,ENSRNOT00000063883 1 3 3 80 11 71056785 71056804 AAGCTTGTAAGATTGCTCCA 58 71047452 71056743 AGTACAGTTCTTCATGGCAG 58 NA Rattus norvegicus 81 Xpo1 ENSRNOG00000009935 ENSRNOT00000014062 3 1 1 80 14 108036435 108036456 CCATTGTTATCTGGAAGTCAGC 60 108036494 108037191 TAAACGAACCTTGGATAACACG 59 NA Rattus norvegicus 81 Lypd8 ENSRNOG00000026844 ENSRNOT00000032816 1 1 1 86 10 43823476 43823494 TGCGCGTATTTGATAACCA 58 43823543 43825623 TTTCAGGTTCATAGTGGGTG 58 NA Rattus norvegicus 81 Lypd8 ENSRNOG00000026844 ENSRNOT00000032816 3 1 1 87 10 43823476 43823494 TGCGCGTATTTGATAACCA 58 43823544 43825624 GTTTCAGGTTCATAGTGGGT 58 NA Rattus norvegicus 81 LOC100911985 ENSRNOG00000045672 ENSRNOT00000075478 2 1 1 60 4 1509268 1509288 ATCAGTTCATCTAAGGGCAGG 60 1509309 1509328 CAACAATGATGTGGGAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561317 ENSRNOG00000031034 ENSRNOT00000045604 2 1 1 60 3 122817171 122817190 GCATTCGAGTACGTTTGTCC 60 122817210 122817231 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2f2 ENSRNOG00000029316 ENSRNOT00000044254 3 1 1 80 15 57956344 57956364 TCAGCCTTTGAGAAACATCAG 59 57942750 57956304 TTCTTTCAGGTATCCCACAGG 60 NA Rattus norvegicus 81 Plch1 ENSRNOG00000009955 ENSRNOT00000057724 2 1 1 80 2 154283531 154292304 AAGCTGCATTATAGTAACGGGA 60 154283472 154283491 CTCCTTCAACAGTGAGTCCA 59 NA Rattus norvegicus 81 Lcn6 ENSRNOG00000028095 ENSRNOT00000029655 1 1 1 80 3 2892840 2892858 GCTGTTCACCAAATGGAGC 60 2892902 2893155 TGTGCACAAGTGAAGTCCT 60 NA Rattus norvegicus 81 Glyctk ENSRNOG00000046307 ENSRNOT00000074595 1 1 1 80 8 114849744 114850351 TTGTGCTCATCTCAGGTGG 60 114849682 114849700 TGAGCGTCTGTTTCTCCTC 60 NA Rattus norvegicus 81 Vom1r74 ENSRNOG00000054932 ENSRNOT00000086592 1 1 1 60 4 87815382 87815400 CATCAACCACCTAAGAGCA 57 87815424 87815442 GACCAGCACCAAGATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr136 ENSRNOG00000024877 ENSRNOT00000034108 2 1 1 60 1 169129007 169129026 CACAGGAGCTATCATTGGAC 58 169129049 169129067 TAACAGTACAGGCAATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 1 2 2 99 10 62023378 62025292 AGCTGTTGTGTATCTTGGAG 58 62022810 62022829 GACTTTGCTATATGGGTCGT 58 NA Rattus norvegicus 81 AABR07004681.1 ENSRNOG00000013711 ENSRNOT00000036482 2 1 1 80 1 149901575 149901595 CCAGTTCTGTGTTCAGATGAC 59 149901635 149901659 AGCTGGAATGTGAAAGTATGC 59 NA Rattus norvegicus 81 Pfdn2 ENSRNOG00000003983 ENSRNOT00000005346 2 1 1 85 13 89725940 89740894 GCGGAACAGGTAATTGCTG 60 89740943 89740961 AGTTCCATCTCCAGCTCAG 59 NA Rattus norvegicus 81 Rn60_X_0634.1 ENSRNOG00000051033 ENSRNOT00000076203 3 1 1 60 X 62743261 62743279 CTGAGGCCAATGAGTCTCC 60 62743219 62743237 TAGCTTTCAGCTCAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 3 4 4 92 12 19760520 19760539 TCTCTTCAGGAAGGGAAAGC 60 19754104 19760470 CTGATCAATATACTTGCCTGTTCC 60 NA Rattus norvegicus 81 Gli1 ENSRNOG00000025120 ENSRNOT00000009803 2 1 1 80 7 70628928 70628946 TGGCTTTCATCAACTCTCG 58 70628520 70628885 CTAAAGAAGGGCTCATGGTG 58 NA Rattus norvegicus 81 Tuba1a ENSRNOG00000060728 ENSRNOT00000083156 3 1 1 81 7 140638961 140638979 TCTTCAGTGAGACAGGAGC 59 140638767 140638919 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880,ENSRNOT00000025680 2 2 2 80 1 212714230 212714778 ACTCTCCTTCCTGATATGGC 59 212714820 212714839 CAAGTGTACTTGGCCTTCAC 59 NA Rattus norvegicus 81 AABR07016056.1 ENSRNOG00000004090 ENSRNOT00000005432 1 1 1 60 14 93041312 93041330 CTACCAGTCCTGAGTCTCC 58 93041270 93041291 TAGTCCTCCATGTAGAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562953 ENSRNOG00000033843 ENSRNOT00000041410 1 1 1 60 1 282064619 282064640 AATGACAGATATGACGAGATCC 58 282064661 282064679 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3566 ENSRNOG00000046071 ENSRNOT00000071480 3 1 1 60 17 21353627 21353648 GAAATGTAGTTCAAAGTTCGGC 59 21353666 21353687 GAGTGGTAGTTCATTGTTAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1249 ENSRNOG00000055051 ENSRNOT00000083649 2 1 1 60 4 1641087 1641108 TTATGTACCTAAAGCCCTCCTC 59 1641128 1641147 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.3 ENSRNOG00000051099 ENSRNOT00000075910 3 1 1 60 X 68175195 68175213 ACTTCCTTCGTTGAGACAG 57 68175153 68175173 CCAGGACTACAAACACTACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uvssa ENSRNOG00000005122 ENSRNOT00000006841 2 1 1 80 14 82624082 82626367 ACATCCAGATTGGCAGGAC 60 82624020 82624040 CTATACTTGGAGGAACCGAGG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 2 5 5 80 1 257517953 257544100 GATTTCTTCGCCAGAAACCT 59 257544142 257544161 TAATTTCCATCCAGGAGCAC 58 NA Rattus norvegicus 81 Rn60_X_0651.4 ENSRNOG00000051331 ENSRNOT00000076119 3 1 1 79 X 64157872 64157891 GCCCAGAAGATGATCATAGG 58 64157933 64157951 TAGCAGACATTCAAGCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgn5 ENSRNOG00000049192 ENSRNOT00000071650 3 1 1 93 X 80140243 80140511 ACTGTCTGCTATGCCTGTG 60 80138036 80138055 TTCTTCCACGACATTTGTGG 59 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 1 2 2 80 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513,ENSRNOT00000076873 3 2 2 60 13 78900877 78900896 GATCTGGAACCCAGTAGTGG 60 78900919 78900937 CATGATGGGTACACAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910164 ENSRNOG00000011225 ENSRNOT00000014916 3 1 1 81 18 38848164 38848185 TGTATTTCAGCGAGAACTACAC 59 38848223 38852816 GCATAAGAATACCCTAACTTGGG 59 NA Rattus norvegicus 81 LOC100909612 ENSRNOG00000046239 ENSRNOT00000072100 2 1 1 80 19 29400210 29400229 TACACTGGGACCTACAATGC 60 29400058 29400168 ATTAGGAGTCGTCCCTTTCC 59 NA Rattus norvegicus 81 Stradb ENSRNOG00000010728 ENSRNOT00000043558 3 1 1 80 9 65779798 65779816 GCTGTGTTTGATTTCCCAC 58 65779858 65780153 TCCATGTAAATCCTGTCTCAG 57 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000047131 ENSRNOT00000071042 3 1 1 86 16 4998024 4998042 TCTGAAACTCTGGCTGGAG 59 5002669 5002687 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 3 2 2 80 11 68150278 68150297 CCTGATTTAAAGCGTTTCCC 58 68148921 68150236 AACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 1 1 2 114 13 96304073 96335197 GAGTACAGAGGCAATAGTGG 58 96356645 96356665 CCTGATAATCGTCCCAATCTC 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 2 1 2 115 13 96304072 96335197 AGAGTACAGAGGCAATAGTGG 59 96356645 96356665 CCTGATAATCGTCCCAATCTC 58 NA Rattus norvegicus 81 Cdyl2 ENSRNOG00000042888 ENSRNOT00000068440 3 1 1 81 19 49197752 49197772 GAAGAGGAGGAAGAGGAAGAG 59 49159212 49197710 TCCACAATCCTTTCAACCCT 59 NA Rattus norvegicus 81 Ube2e1 ENSRNOG00000008794 ENSRNOT00000011653 1 1 1 80 15 8175737 8175757 TCTGTGTATGAAGGTGGAGTC 59 8175799 8176461 AAACGTAACCTTTGGAGGC 58 NA Rattus norvegicus 81 Otud6b ENSRNOG00000006636 ENSRNOT00000008725 3 1 1 80 5 28340923 28340941 AGCCATTCAGACGACTTCC 60 28338965 28340883 GTACTTTCCAAACTCTTCTGGAG 59 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410,ENSRNOT00000021193 3 2 2 80 4 179305672 179305692 GAATTAGAAGCTTCGACCGAG 59 179298017 179305631 GAGATCTTTGGCCCTAAACG 59 NA Rattus norvegicus 81 Syngr4 ENSRNOG00000021093 ENSRNOT00000028635 1 1 1 82 1 101873815 101874911 TCATTCTGGCTGTCCTCTG 59 101873751 101873769 CTTGGACTTCGAATGCTGC 60 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000072158 3 1 2 65 1 212872543 212872564 CCCTGTCATTTATTCTCTGAGG 58 212872584 212872732 GGACATACAAATAACTTTCTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Dll4 ENSRNOG00000014011 ENSRNOT00000018970 2 1 1 81 3 111137278 111137296 ACATTATGAGTGCCAACCA 57 111137338 111137713 AAGACATATAGGCTGATCACAG 58 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000074608 1 1 2 60 13 91954395 91959724 AGAAGCCTCAGAAGAAACAG 58 91959744 91959765 TGCTGTAAATCTTCTCTGATGG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07047606.1 ENSRNOG00000032999 ENSRNOT00000046713 3 1 1 81 5 39689178 39689250 AAGAGTCCAGTGAGACTGC 59 39689115 39689137 ATCTCTAAATCTCCAGAGGTGTG 60 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254,ENSRNOT00000022068 3 2 2 80 1 48284503 48286519 TGCTGTATTACTGGTTTGTCC 58 48286561 48286579 CCATTATCCTGACAGCTCG 58 NA Rattus norvegicus 81 LOC680217 ENSRNOG00000022941 ENSRNOT00000035257 3 1 1 60 1 154132159 154132177 TGACTTCTTGGAAAGCCAC 58 154132199 154132219 GTTGCCCATCTTCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646,ENSRNOT00000082723 2 5 5 80 4 140413595 140413614 CTTTCAGACACATTTGCCGA 59 140413654 140414439 CTATGTACTCCTGGTTCTTCCT 59 NA Rattus norvegicus 81 LOC498084 ENSRNOG00000038987 ENSRNOT00000046605 2 1 1 83 11 63170203 63177106 GTTGGAAGAGGGATGAAGC 58 63177153 63177171 CTGTCTTGTCGAAAGCCAG 59 NA Rattus norvegicus 81 Polg ENSRNOG00000032293 ENSRNOT00000044567 2 1 1 80 1 141182676 141182694 GGAGATGAAGAAGTCGCTG 58 141182512 141182634 CAAGGGTCTTCTTTGTACCTC 58 NA Rattus norvegicus 81 AABR07030798.1 ENSRNOG00000045888 ENSRNOT00000075706 3 1 1 95 10 104933478 104935460 TATGGTCCCAGGTTTGAGG 59 104935519 104935537 TCATTTGTGGTCATGCTGG 59 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 1 1 1 110 9 82055487 82055505 AGATCGCCATCCATGAGTG 60 82055579 82062537 AACCTCTGCTGAAGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC103691893 ENSRNOG00000045581 ENSRNOT00000073088 2 1 1 60 3 124460889 124460908 TTGATTGGCATACGAAGGTC 58 124460848 124460867 GTTCTCCATCTGTCATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nupl2 ENSRNOG00000010435 ENSRNOT00000013865 3 1 1 80 4 7520998 7521016 TCACCAGAAGAGTTGAGGC 59 7518396 7520960 CTGTTGAACAGAGTTTAGATAGCTC 60 NA Rattus norvegicus 81 Pm20d2 ENSRNOG00000007755 ENSRNOT00000060914 2 1 1 81 5 48427771 48427789 GAAAGAGCTCCACGTTCTG 59 48425436 48427727 AATTTCTACTGTGCAGCCTG 59 NA Rattus norvegicus 81 Magel2 ENSRNOG00000010158 ENSRNOT00000013483 3 1 1 60 1 123019020 123019039 CCCACACTTACATCATCGTC 59 123019060 123019080 TAGGATGCCAGCAAATTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scin ENSRNOG00000004498 ENSRNOT00000005988 2 1 1 80 6 59997794 59997812 GGAAGACTGCCATGAAGAC 58 59997371 59997752 CTGGGAGTACCTGAATTTGAG 58 NA Rattus norvegicus 81 Rars2 ENSRNOG00000008643 ENSRNOT00000011688 3 1 1 80 5 50114716 50115040 CTTCTCAGGTTCGATGAGGT 59 50115080 50115101 CAGGGTTAAGAGGTAACTAACG 58 NA Rattus norvegicus 81 LOC100359989 ENSRNOG00000049038 ENSRNOT00000065658 1 1 1 80 3 3237692 3237945 CTTGCACAGAGAAGATGGA 57 3237989 3238007 TCAAACGTATAGCGTCCAG 57 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504,ENSRNOT00000064252 3 2 2 120 8 115153056 115153075 TGTATGCACTACCCTTCCTC 59 115153158 115153517 AGAGTCGGAGTCTTCACAC 59 NA Rattus norvegicus 81 Ppp1r9b ENSRNOG00000052113 ENSRNOT00000089497 1 1 1 80 10 82802535 82802553 GGCTTTCAGAGGAAGAGGA 59 82802595 82806194 AGTAGGTGCTGAATACTTGGA 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 2 3 3 108 13 48801362 48804630 ATACGCTCTTCCAGTTCCC 59 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 3 2 2 80 16 18706327 18706655 GAGTCCTTGTTCAGGTGTC 58 18706699 18706717 TCTTGGAAGTTCCGTAGGT 58 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 2 2 2 203 2 84436730 84436748 CGATTCCTTCTACCCTCCG 59 84394086 84436563 ATAATAAGGCCAGTCCGGC 60 NA DesignRelaxed Rattus norvegicus 81 Olr53 ENSRNOG00000031110 ENSRNOT00000043023 1 1 1 60 1 167970738 167970760 GATATGCTGCCATTCTAACTCAC 60 167970700 167970720 CTAGTAATGACTGCCAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1244 ENSRNOG00000061646 ENSRNOT00000087099 3 1 1 60 4 1584160 1584180 CCTGTTCCTACTCTTTCTGCT 60 1584202 1584220 GATCAAAGCCAAGTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmas ENSRNOG00000013816 ENSRNOT00000018734 1 1 1 80 4 177001831 177001852 GGATATGACTCTGTCTTCTCCG 60 177001893 177004996 GGTCACTTCACGAACTCCT 59 NA Rattus norvegicus 81 Defb23 ENSRNOG00000023477 ENSRNOT00000032030 1 1 1 88 3 147928624 147932363 GGAATCAGAATTTATGGTGGTG 58 147928557 147928575 TCTGTACCTGGGTTTCCTC 58 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 2 2 2 80 20 13606635 13607572 ATTGCAGATGACCATCTCCA 59 13606574 13606598 CATATCTTTGTCTAAAGCCACTCTC 60 NA Rattus norvegicus 81 Vsx2 ENSRNOG00000011918 ENSRNOT00000015889 3 1 1 87 6 108292003 108292021 AATGAAGCCCACTACCCAG 59 108292072 108305430 GGAACCACACCTGTATCCT 59 NA Rattus norvegicus 81 LOC100362643 ENSRNOG00000042804 ENSRNOT00000067815 1 1 1 60 4 142970110 142970129 CGAAGAGGAATGGAGAAGAC 58 142970069 142970090 GATCATGTAATGAACCCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912415 ENSRNOG00000048360 ENSRNOT00000071677 3 1 1 60 4 1751830 1751848 GATTCAAAGCCTTCAGCAC 57 1751788 1751809 GAACCAAAGAAGACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000071713 1 1 2 83 4 480609 480627 TTACTGGCTCTCACTCAGC 59 480543 480562 GAAGGCTGTGAAGAACTGG 59 NA Rattus norvegicus 81 Tmc8 ENSRNOG00000046086 ENSRNOT00000075047 2 1 1 80 10 106793084 106793344 CTTCTACATCAAGAAGTACACCC 59 106793384 106793402 AAGAAGATGGAGCTGGAGG 59 NA Rattus norvegicus 81 Tmc8 ENSRNOG00000046086 ENSRNOT00000075047 3 1 1 80 10 106786507 106786711 CTGAAACTGACAGGTCTCC 58 106786755 106786773 ATTCCAAAGTGGGTTGTGG 58 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 2 1 1 61 1 22431400 22431420 CCAAGGATCCTGTGTCAGG 60 22431357 22431376 AGACTGCATAGAGGATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193,ENSRNOT00000065584 2 2 2 80 10 37053917 37053936 AACACTGGTCGATCAAGAGG 60 37053188 37053879 CTCCTTCTGATCTAAGACCTTCTC 60 NA Rattus norvegicus 81 Olr582 ENSRNOG00000046448 ENSRNOT00000043371 3 1 1 60 3 75835129 75835149 TGATAGGTACAAGGCCATCAG 59 75835169 75835189 AACTCTGTTAGACATGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552619 ENSRNOG00000027803 ENSRNOT00000035759 2 1 1 81 10 41490287 41491077 GTTTGTGAGGCACTCATACC 59 41490225 41490243 TGTTTCCAGGAAGCTCCAG 60 NA Rattus norvegicus 81 AABR07051708.1 ENSRNOG00000054828 ENSRNOT00000044455 3 1 1 60 3 19772091 19772109 GATGACCCAGACTCCATCC 59 19772133 19772151 GCAACTGATGGTGACTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syndig1l ENSRNOG00000027645 ENSRNOT00000031650 2 1 1 90 6 108395968 108395988 ATCCATACTGTGTCCTATGGG 59 108394650 108394668 CACTCTCAGTCGAGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Uvrag ENSRNOG00000016206 ENSRNOT00000022176 3 1 1 80 1 163965050 163965068 ACAGAAGAAAGCTCTGGGA 58 163950927 163965007 GCAAATGCACTTCCTTTGTC 59 NA Rattus norvegicus 81 Trem2 ENSRNOG00000013578 ENSRNOT00000018351 1 1 1 81 9 14615343 14615361 CTACCAGTGTCAGAGCCTC 59 14612742 14615298 ATCTAGAGGGTCCTCCAGC 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000020587 3 1 4 80 1 189312763 189312781 GGAGACTCTGGAGAGTTGG 59 189312823 189315326 CAGGTAATTCCCGTTTCTGTC 59 NA Rattus norvegicus 81 AABR07059201.1 ENSRNOG00000021533 ENSRNOT00000036164 2 1 1 60 4 8502116 8502136 AATTTCATGGGCTTGAGTGAC 59 8502076 8502094 GAATCTTGCCGATGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem186 ENSRNOG00000027087 ENSRNOT00000030290 1 1 1 99 10 7077561 7077579 GTTAGCGCATTAACCTCCC 59 7077642 7078928 GAAGGAGGAAAGCCATGAG 58 NA InUTR Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 3 2 2 80 17 10088775 10088793 AAGGAGGTGAACAACCAGG 60 10088837 10090042 AGACCAGCGACTATTCAGG 59 NA Rattus norvegicus 81 Zfp652 ENSRNOG00000017001 ENSRNOT00000022811 2 1 1 84 10 83561159 83561491 GAAACACATGGTTGCACAC 58 83561539 83561557 CTTGAGTGACATACTGCGC 59 NA Rattus norvegicus 81 AABR07061362.1 ENSRNOG00000051562 ENSRNOT00000080213 3 1 1 80 4 119465669 119465691 TTCAGGCCATCATCAGTCC 60 119465735 119465753 GCATGGCACAGAAGATGTG 60 NA Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 2 2 2 80 9 10973764 10974003 ACAACCCAGATGTGAGGAG 59 10973702 10973722 TCTTCTGAAGGATCTGAGAGG 58 NA Rattus norvegicus 81 Acyp2 ENSRNOG00000042419 ENSRNOT00000067998 3 1 1 92 14 115033071 115034547 GCTTCAGAATGTATACAGAAGGAG 59 115033002 115033021 GAACTTGACCTGTCACTGTG 59 NA Rattus norvegicus 81 Omg ENSRNOG00000014107 ENSRNOT00000018891 1 1 1 103 10 66847336 66848252 CGACATTATGGCTTTGATGG 57 66847252 66847270 ATTGGAGAGGACAAATGCA 57 NA InUTR Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 1 2 2 80 5 161773890 161794870 AGGACTTCAGCTACAGTCTC 59 161773829 161773847 CCTTTCTGCATTGTCTGGT 58 NA Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650,ENSRNOT00000071586 3 2 2 100 11 76151525 76151545 AGAAGGTCAAATCATGAAGGG 58 76168674 76168696 GAGATGGTTCTCTGTACATACAC 59 NA DesignNoJunction Rattus norvegicus 81 Pex7 ENSRNOG00000012322 ENSRNOT00000016728 2 1 1 80 1 15356543 15357154 CCAAACTGTCAAAGTGTGGG 60 15356482 15356502 GTGCTGTAAATGACACTCTCG 59 NA Rattus norvegicus 81 Olr588 ENSRNOG00000005793 ENSRNOT00000007603 1 1 1 60 3 75937378 75937400 CCATTAATGAGTGGCTACTTTCC 60 75937418 75937438 ATGAAGAAACAGATGACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aftph ENSRNOG00000005411 ENSRNOT00000056944 3 1 1 80 14 104932067 104933523 CTAACCCTTTAGATGCTAGTGGA 60 104932009 104932028 TGCTAGAGCTACTGTCATCC 59 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721,ENSRNOT00000091057 1 2 2 80 11 65807242 65810863 GCATTGAGCAATGCAAACC 59 65807180 65807201 TGTGAAGTTCACAATGGTTGAG 60 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721,ENSRNOT00000091057 3 2 2 82 11 65807246 65810867 CTCTGCATTGAGCAATGCA 59 65807182 65807202 TGAAGTTCACAATGGTTGAGG 59 NA Rattus norvegicus 81 Rn60_X_0554.2 ENSRNOG00000051071 ENSRNOT00000076704 1 1 1 60 X 55114353 55114371 CCAAACCAAGTCAAAGGTG 57 55114392 55114413 CACAGTTCATATCGTGATACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0554.2 ENSRNOG00000051071 ENSRNOT00000076704 3 1 1 60 X 55114360 55114378 AAGTCAAAGGTGTGAAGGC 58 55114400 55114420 GCATATGCACAGTTCATATCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srcin1 ENSRNOG00000011475 ENSRNOT00000016070 2 1 1 80 10 85469508 85469627 AACTCAAGGCTCATTTCCC 58 85469446 85469464 TCAGAAACTTGACTGCCTC 57 NA Rattus norvegicus 81 Pex1 ENSRNOG00000025991 ENSRNOT00000038136 3 1 1 80 4 27672391 27672411 GACTTTACAGTTCTCGTGGAC 59 27672075 27672351 TAAAGTCAATCCTTCCCTGGT 59 NA Rattus norvegicus 81 Art5 ENSRNOG00000020242 ENSRNOT00000055243 1 1 1 91 1 167194480 167195455 TCTGGAAGGTACAAGCTGTC 60 167194408 167194426 CTCCATCTCCTCAGAGCAG 59 NA Rattus norvegicus 81 LOC100361746 ENSRNOG00000028116 ENSRNOT00000038955 2 1 1 80 10 71488997 71489630 GATTTGGTAATAAGAGTTCCTCCAG 59 71488941 71488961 GGTAGCTATCGTCTGATTTCG 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169,ENSRNOT00000067393 3 2 2 80 14 115423549 115424105 CTTTCCAGGGAAATGCTGAG 59 115424146 115424166 TGATTCCAAAGTCATCTTGGC 59 NA Rattus norvegicus 81 Soga3 ENSRNOG00000012324 ENSRNOT00000016712 1 1 1 85 1 31118439 31120322 GGATCTCAAGGTTGCAAAGG 59 31118373 31118391 CGTCTTCTGTTGTGGTCCT 60 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 3 2 2 80 X 122659259 122659279 AGTGGAGGATCGAGATTTCAG 59 122659321 122661382 AGCAGTTGCCTTCATAGGT 59 NA Rattus norvegicus 81 Wdr70 ENSRNOG00000013336 ENSRNOT00000060146 3 1 1 80 2 56962956 56992715 CATCACAGATGCGAGTGTG 59 56962894 56962913 GCCAATCCATTTCCAGTTCC 60 NA Rattus norvegicus 81 Apoa4 ENSRNOG00000055909 ENSRNOT00000080658 2 1 1 80 8 50538237 50538258 CATTAAACATGCCGATGACC 58 50538298 50538319 TCTGTTTCCTTGGTTAGATGTC 58 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 1 2 2 80 10 74109047 74109065 TTACGATGTGCAAGACACC 58 74106772 74109005 CTCCTTTGTTGATCTGTTGTC 57 NA Rattus norvegicus 81 Endog ENSRNOG00000016033 ENSRNOT00000021531 2 1 1 60 3 8743456 8743474 GTTTATGTCTGCACAGGGC 59 8744119 8744137 CATAGGACTTCCCATCAGC 57 NA DesignNoJunction Rattus norvegicus 81 Cox6c ENSRNOG00000010807 ENSRNOT00000014407 2 1 1 111 7 74731393 74734383 GCCTATAAGTTTGGCGTGG 59 74731300 74731318 TCTGAAAGACACCAGCCTG 60 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 3 3 3 85 10 3342553 3356725 CTGGAATACATATAAGACTGGTCTG 59 3356935 3356953 CTGTCCTCCAGTTCACAGG 60 NA Rattus norvegicus 81 Rbm22 ENSRNOG00000019235 ENSRNOT00000026087 3 1 1 80 18 55834269 55834288 GGATAAGACGATCACCACAC 58 55834328 55836124 TGGTAGAAATGATTCCTGAGGT 59 NA Rattus norvegicus 81 Pmch ENSRNOG00000004632 ENSRNOT00000006174 3 1 1 84 7 28655438 28655456 TTGCTCCTTCTCTGGAAGG 59 28655504 28655842 GAGCCTGTGTTCTTTGTGG 59 NA Rattus norvegicus 81 Arl16 ENSRNOG00000049235 ENSRNOT00000071433 2 1 1 83 10 109637540 109638116 CGCTCTTGTTCATGATGGA 58 109637475 109637493 CTTCTGCAGAAAGAAGGCC 59 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 2 2 2 81 14 13056813 13056834 TTTGGTATGGGAAAGAACTGAC 59 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Nudt22 ENSRNOG00000021158 ENSRNOT00000028734 2 1 1 80 1 222247958 222247981 CAGGAATTATTATCTGAGTGGAGG 59 222247674 222247920 CTCTGTACCCTCTGTGTCTC 59 NA Rattus norvegicus 81 Fndc3a ENSRNOG00000014478 ENSRNOT00000066888 1 1 1 80 15 54389605 54397987 AAGAACGGAAGGTTTGTCTC 58 54389544 54389562 GTAGGACGTGGATTCACTG 58 NA Rattus norvegicus 81 LOC684179 ENSRNOG00000047148 ENSRNOT00000073158 3 1 1 82 1 167826877 167827059 CCAATGTTGTTCCTCACTCC 59 167827103 167827122 GTAGAGACTGCTAGGCATGG 60 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 3 2 2 81 10 94359741 94359760 CTACAGTGTGGGAATCACAG 58 94357160 94359697 TAGCAGCATCTGAGTAGCA 58 NA Rattus norvegicus 81 Olr1617 ENSRNOG00000046129 ENSRNOT00000040603 2 1 1 60 15 27279918 27279940 CTCTTCTTCATTGTCTACCTCCT 59 27279960 27279978 ACACAGCACAGATGATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1617 ENSRNOG00000046129 ENSRNOT00000040603 3 1 1 60 15 27280141 27280161 TCTTCTCCTTGGGTTCTACAG 59 27280183 27280201 AGGTAGCGATCAAATGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd6 ENSRNOG00000006751 ENSRNOT00000009249 2 1 1 80 15 12408475 12411511 GATAGGTGACAAGGAGGGA 58 12411554 12411573 ATATCTAGTCGGTGACCCAG 58 NA Rattus norvegicus 81 Tbc1d32 ENSRNOG00000000802 ENSRNOT00000001051 1 1 1 80 20 37560498 37560518 TTTCTTCATATCCACTGCCAC 58 37536339 37560458 TACCATACCTGTTGACTTGCT 59 NA Rattus norvegicus 81 Tbc1d32 ENSRNOG00000000802 ENSRNOT00000001051 3 1 1 80 20 37697758 37697777 AATCAGGGAGAGGAGTTTGG 59 37686218 37697720 CTCCTTATACTCTTTGGATTCCTG 59 NA Rattus norvegicus 81 Glra4 ENSRNOG00000002391 ENSRNOT00000052302 3 1 1 80 X 107432121 107432139 GTAGGCCTTGGTATCACCA 59 107427710 107432080 ATAGGACACCTTAGGCAAAGAG 60 NA Rattus norvegicus 81 3298a3 ENSRNOG00000057560 ENSRNOT00000082597 3 1 1 60 20 2279915 2279937 CAATTAATTTCCTCGGACATCCC 60 2279952 2279975 TTCTATCAGGTCTGACCTTATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 2 2 2 80 7 70958859 70959142 CTTCTCTGAGATGGACCGA 58 70959184 70959204 TTGAGGTTCAGAGTTTCACAC 59 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 3 2 2 80 14 86473692 86474250 AGATGTCCTGCCTAACCTG 59 86474294 86474312 GAGCAGTTGACGACAATCC 59 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 1 2 2 80 7 143464074 143466097 CAAACCAAGTACCAAGAGCTG 60 143464014 143464034 CTCTGAGATCTCCATCTTGCT 59 NA Rattus norvegicus 81 AC105693.1 ENSRNOG00000058416 ENSRNOT00000079544 3 1 1 80 2 143987437 143992263 CACATTGGAAAGGGTGTGC 60 143992307 143992325 GACAAAGATGCTGCTGTCG 60 NA Rattus norvegicus 81 Aldh6a1 ENSRNOG00000011419 ENSRNOT00000015545 3 1 1 83 6 108152064 108152277 CGTCAATGCAGGAGATCAG 58 108151999 108152019 TCAATCAGATTGCAGACTCTC 58 NA Rattus norvegicus 81 Rad21l1 ENSRNOG00000022335 ENSRNOT00000055455 3 1 1 80 3 147172907 147173837 AGCACATTCTAGATCCCTCAG 59 147172847 147172866 TCACATCCTTCCCATCTTGG 60 NA Rattus norvegicus 81 Rars ENSRNOG00000007739 ENSRNOT00000010252 1 1 1 80 10 20657043 20657063 CAAGTTTGGAACAGTTACGAG 58 20652267 20657001 TTTCTGCCTGAAGACTCCT 58 NA Rattus norvegicus 81 Rcor2 ENSRNOG00000021183 ENSRNOT00000035491 3 1 1 80 15 19605537 19605556 AGTCGAACTAGTGTGATGGA 58 19605597 19605706 CTCTTCTAGCTCATCACTGTC 58 NA Rattus norvegicus 81 LOC680579 ENSRNOG00000032160 ENSRNOT00000049161 3 1 1 60 14 44225409 44225428 GATGCCAGAGAAAGGAAAGC 59 44225368 44225389 TTGCCTTTATGACTTTGAACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564425 ENSRNOG00000038259 ENSRNOT00000058238 3 1 1 60 3 123997059 123997077 CAAGTTCCGACTGAACCTG 59 123997017 123997037 GAGGGTGTAAGGTTTGATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar1 ENSRNOG00000016073 ENSRNOT00000021510 1 1 1 60 1 22596125 22596144 TCCACCTAGCCTTCATTTCC 60 22596084 22596104 TTGTATCTTAAAGGGTCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 2 2 2 80 5 160035690 160035709 ATGGGCTTTCTTCAAACGTG 60 160033905 160035649 CAAACACCACCTTTACCACAG 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191,ENSRNOT00000011073,ENSRNOT00000084004 2 3 3 81 10 12052239 12052259 GTTTCCCTACTGGATAAGCTG 58 12052302 12052718 CTCCAATGTCCTGCATGAG 58 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000045922 ENSRNOT00000071339 2 1 1 82 1 81579795 81581121 CTGCTCAGATATGCTGACCT 59 81581165 81581184 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 2 2 2 113 6 109097472 109103608 AAGTACACTCAGGCTGAGG 59 109097377 109097395 CATAAAGCGGACCTTGGAG 58 NA Rattus norvegicus 81 LOC100912408 ENSRNOG00000047813 ENSRNOT00000075693 3 1 1 60 1 173128161 173128183 AATCCACTAATCTACAGCCTGAG 60 173128123 173128142 GCCATAATTTCAACACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifa6 ENSRNOG00000043258 ENSRNOT00000065104 1 1 1 80 3 149471548 149471567 GAAGGTCTTTGCCTCATCTG 59 149471608 149473807 AGAAATGAGAGCATCCCTGAG 60 NA Rattus norvegicus 81 Arhgap42 ENSRNOG00000026821 ENSRNOT00000031492 3 1 1 80 8 7241115 7241135 CATCACACTACAGGCATTCTC 59 7239902 7241076 AACGTGTAAATCGGTTCTTTCC 60 NA Rattus norvegicus 81 Snx6 ENSRNOG00000005249 ENSRNOT00000007300 2 1 1 80 6 75633699 75633717 CTGATGAGGACCTCAAGCT 59 75631747 75633658 TTCGATAGAGAAGGTCCTTAGC 59 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 2 3 3 80 1 192467134 192467152 AGCAGGAATGACTTCATGG 58 192467196 192477522 TAACTTGAACCAGCCATCC 57 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 3 3 3 80 1 192467139 192467160 GAATGACTTCATGGGATCTCTG 59 192467199 192477527 CTTAGTAACTTGAACCAGCCA 58 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207,ENSRNOT00000086391 3 2 2 80 9 70432406 70432425 GATTTGGAAGACCTTTCGCT 59 70432061 70432365 AGATGCAACAAGTTTCTCCTG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000079192,ENSRNOT00000084717,ENSRNOT00000044408,ENSRNOT00000019969,ENSRNOT00000087441 3 6 6 80 4 154712901 154712919 ATTGTCTCTGCTGCTTCCA 59 154712959 154713245 GAACTCAAGATATCACCCATCAC 59 NA Rattus norvegicus 81 Oaz2 ENSRNOG00000015953 ENSRNOT00000021372 1 1 1 81 8 71227459 71228317 GGGAGCAAAGAAGGATTATTAGC 60 71228357 71228376 TCCTGAAGCAGATGAAGACG 60 NA Rattus norvegicus 81 RGD1310081 ENSRNOG00000042118 ENSRNOT00000063899 3 1 1 80 2 57294935 57298348 AGAGAAAGGAGGAAGAAGGA 57 57298389 57298409 TTGTAACAGTAGAGGTGACAG 57 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 1 2 2 60 15 19727801 19727821 AGGTATTGGGTCAGTTGACAG 60 19726202 19727782 AAAGATTTCATGAACTGCTCCG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_13_0841.1 ENSRNOG00000026917 ENSRNOT00000036680 1 1 1 60 13 79204056 79204074 GGCTACAGCTTTACCACCA 60 79204096 79204116 ACAGCTTCTCCTTTATGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000046388,ENSRNOT00000086036 2 3 3 80 10 65588102 65588122 ACCAGAAAGATGACAATGGTG 59 65588164 65588278 CCTTGTCAACCTTGATGCC 59 NA Rattus norvegicus 81 Cngb3 ENSRNOG00000006084 ENSRNOT00000008087 3 1 1 80 5 33436021 33436039 CCATTCCTCAGAGTACGCA 59 33436080 33439116 TGGACTCATCTAGGATTCTCTG 59 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 3 2 2 81 1 196858129 196858148 CAAGTACTTCCAGTCTACCG 58 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000023407 ENSRNOT00000029531 1 1 1 143 1 31262392 31262410 GTCGATTGCCGATTTCTCC 59 31262026 31262044 CTAGCAGGATCGAGAAGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Casz1 ENSRNOG00000013474 ENSRNOT00000018000 1 1 1 80 5 165759097 165759115 ATTGCAGCGTCTACTACCA 59 165759159 165760180 CCTTGTTACATCCCACCTG 58 NA Rattus norvegicus 81 Lrrc48 ENSRNOG00000021303 ENSRNOT00000032685 1 1 1 80 10 46761699 46762028 CACATCTCGTAGACAAGATTCAC 59 46762065 46762086 GGTCGACGAATTGATTGATCTC 60 NA Rattus norvegicus 81 Btg1 ENSRNOG00000004284 ENSRNOT00000005910 2 1 1 98 7 37812891 37812910 TTCATCTCCAAGTTCCTCCG 60 37812971 37813785 TTTGTAATGCTCTGCCAGC 59 NA Rattus norvegicus 81 Rps6 ENSRNOG00000049025 ENSRNOT00000073270 3 1 1 81 5 105200068 105200088 AAGCTTCGTACGTTCTATGAG 58 105199664 105200025 CCACATAACCCTTCCACTC 58 NA Rattus norvegicus 81 Akr1c1 ENSRNOG00000038331 ENSRNOT00000058367 2 1 1 80 17 69460240 69460258 AGTGCGACTAAGTGATGGT 59 69457693 69460199 GCCTTACTCTTAGGTACCTCTC 59 NA Rattus norvegicus 81 Rn60_X_0677.1 ENSRNOG00000051129 ENSRNOT00000075885 3 1 1 60 X 66837107 66837125 GGCTGGATGAATCTGATGC 59 66837065 66837085 TTATTTAGGCGTTCTTCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0722.3 ENSRNOG00000051057 ENSRNOT00000075839 2 1 1 60 X 71321625 71321645 CAATAAAGGCCCTGTTGAGTG 60 71321663 71321685 GTGACCTCATTGGTTACATTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc121 ENSRNOG00000022717 ENSRNOT00000036629 2 1 1 60 13 99820871 99820890 AAACGGGTAAAGAGGAAGAC 58 99820830 99820848 TTTCTTGGATTTGCTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065113.1 ENSRNOG00000050817 ENSRNOT00000072451 1 1 1 108 6 110210118 110210136 GAAGGTACCACCTGTTCTG 58 110210027 110210047 GAAGTCAGTATGACCAAGGC 58 NA Rattus norvegicus 81 Hes5 ENSRNOG00000013850 ENSRNOT00000018769 3 1 1 80 5 172364755 172364773 TCAGCTACCTGAAGCACAG 59 172364907 172364925 AGTAACCCTCGCTGTAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Cnn1 ENSRNOG00000027736 ENSRNOT00000029577 3 1 1 80 8 23116823 23116842 TTTATCAACAAGCTCCAGCC 59 23116885 23118070 TCCTATGTTCTCCAGCTGG 59 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984,ENSRNOT00000003801 3 2 2 82 10 43885366 43885384 GACCAACTCTCAAGTGGTG 58 43884713 43885320 TATGTTGTCGACACCTGTG 58 NA Rattus norvegicus 81 LOC100360573 ENSRNOG00000020093 ENSRNOT00000027225 1 1 1 112 19 38619880 38620034 CAAAGCCTTAGACAAGCGC 60 38620110 38620128 TCAGGTTGATCTGGTGCTC 59 NA Rattus norvegicus 81 Rnf224 ENSRNOG00000040284 ENSRNOT00000062001 1 1 1 60 3 2455782 2455800 CCATGTTGGACTTGGACCT 60 2455740 2455758 TTTGATGGTTCCCGTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 3 2 2 80 X 105149487 105149505 GGAAGATTCTAACCACGCT 57 105149549 105151032 TTCTTAGGGCCTTTCTGGA 58 NA Rattus norvegicus 81 Tert ENSRNOG00000025327 ENSRNOT00000022683 1 1 1 80 1 32252641 32252660 CTTTCTGGGCATCATCTCCA 60 32252394 32252598 GCCCTTAGTGACACTCCTG 60 NA Rattus norvegicus 81 AABR07030970.1 ENSRNOG00000049635 ENSRNOT00000041082 3 1 1 80 10 111279302 111280480 TTGCCAATGATACACCAACAG 59 111279242 111279263 ACTTGGTTTGTTCTAAGTTGGC 60 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 1 2 2 74 12 2581134 2581152 AAGGAACCTGTGGTCAGAG 59 2581190 2581292 AACTCTTCGTGTTCCAGAG 57 NA DesignNoJunction Rattus norvegicus 81 AABR07005844.1 ENSRNOG00000034038 ENSRNOT00000027919 2 1 1 80 1 203199465 203199484 CAATGCCAGATGTTTGTGGA 59 203199527 203201054 CCTTCAAGCTGCACATCTG 59 NA Rattus norvegicus 81 Lzic ENSRNOG00000016200 ENSRNOT00000021822 2 1 1 81 5 166437469 166437488 TGGAAAGAGACCTGCATACC 60 166437530 166437929 TCATCATCTGTCAGCTTCTCC 60 NA Rattus norvegicus 81 Ecm1 ENSRNOG00000021166 ENSRNOT00000028740 2 1 1 80 2 197858762 197858880 AGGTAAAGTGGATCCTGCTC 59 197858701 197858720 TGTTCAATTGGGATTCGAGG 58 NA Rattus norvegicus 81 Bach2 ENSRNOG00000006170 ENSRNOT00000065882 2 1 1 82 5 47789517 47789536 ATTCCAGTGACGAATCTGGA 59 47789581 47801520 AAGTTTAACCTCCTGGCCC 60 NA Rattus norvegicus 81 LOC100362078 ENSRNOG00000024026 ENSRNOT00000032208 1 1 1 84 8 37064738 37069412 TCATCCAAGTCCAAGCTACAG 60 37064674 37064692 GTAGTGCAGTTGCTCTTGC 60 NA Rattus norvegicus 81 Lrch2 ENSRNOG00000029582 ENSRNOT00000045463 2 1 1 80 X 118546290 118546309 GTGGCAATGAGAATGAGGAG 59 118540344 118542887 TGTCATAGTCCTCAGATGATACC 59 NA Rattus norvegicus 81 AABR07021930.1 ENSRNOG00000037928 ENSRNOT00000029787 1 1 1 80 13 99346046 99346066 TTAGAGAAGTTCTCCACCTGG 59 99346108 99346228 TTCCTCTGTTTCCAGGGAC 59 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 1 2 2 81 2 235852556 235852652 AACTAGGCTGTCTCGAACC 59 235852493 235852511 ACATGCGGATTTAGGTGCT 60 NA Rattus norvegicus 81 Alkbh5 ENSRNOG00000028341 ENSRNOT00000034006 3 1 1 81 10 46915951 46915970 GAGATCACTCACTGCATACG 58 46916011 46926514 GTGCATCTAATCTTGTCTTCCT 58 NA Rattus norvegicus 81 Gpr31 ENSRNOG00000039255 ENSRNOT00000060121 1 1 1 60 1 53520350 53520369 TCTGATGGTTGTTCTCACTC 57 53520309 53520327 CGTGGAATTCTGGGTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 1 2 2 90 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952978 47958502 GGATTTGAGTGGTGCACTC 59 NA Rattus norvegicus 81 Romo1 ENSRNOG00000045555 ENSRNOT00000072464 1 1 1 82 3 152223024 152223042 AAGATGGGCTTTGTCATGG 58 152223088 152224124 ATTCCGATCCTGAGACAGG 59 NA Rattus norvegicus 81 LOC688922 ENSRNOG00000027445 ENSRNOT00000035326 2 1 1 60 4 66336210 66336228 ATATCCGTTCTTGGCTCCT 58 66336168 66336187 CCTATGTTTCCCACTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 1 1 1 61 13 36265349 36265367 GTTACCTCGATCCCTTCCA 59 36258698 36265325 GACTGCACAAAGCTGAACTC 60 NA DesignNoJunction Rattus norvegicus 81 LOC688010 ENSRNOG00000028982 ENSRNOT00000051589 3 1 1 138 1 103900592 103909852 TGGAGGAAAGAAACATCAGC 58 103900473 103900491 GCAACGATGAAGGAAAGCA 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741,ENSRNOT00000067333 2 3 3 80 7 81991901 81991919 TGGAGAGTGTCTGCATTCC 59 81978549 81991859 ATTCTGCATCTTGCACATCTG 59 NA Rattus norvegicus 81 Naaa ENSRNOG00000002273 ENSRNOT00000003102 3 1 1 82 14 17284443 17284464 TATGTGACTACCTCAACCTCAG 59 17284507 17288263 AATACTGGTGCAGAATGCG 59 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310,ENSRNOT00000040188 2 3 3 80 3 146390332 146396188 AGTTTCAGCTTCAAAGAACCC 59 146390272 146390292 AAATAGCCTTTCTGCTTGTCG 59 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154,ENSRNOT00000064483 1 2 2 80 14 92361754 92361772 AACCCAGTAAATGCTAGGC 58 92344375 92361711 CAAGGGAACCTTTCTGAGTC 58 NA Rattus norvegicus 81 Atg101 ENSRNOG00000007756 ENSRNOT00000010194 2 1 1 81 7 142932872 142932890 CGACTTCACATATGTGCGT 58 142932934 142937889 CAGTGCATCCTTGAATTCCC 59 NA Rattus norvegicus 81 Atg101 ENSRNOG00000007756 ENSRNOT00000010194 3 1 1 81 7 142932872 142932891 CGACTTCACATATGTGCGTG 60 142932934 142937889 CAGTGCATCCTTGAATTCCC 59 NA Rattus norvegicus 81 Yrdc ENSRNOG00000025424 ENSRNOT00000039870 1 1 1 81 5 142846513 142848677 GTGTTGAGGAGTTCCAAGAC 59 142848721 142848739 TCAGGGCTTTCACTATCCC 59 NA Rattus norvegicus 81 Mir3556a ENSRNOG00000035458 ENSRNOT00000053581 2 1 1 88 4 58343945 58343963 AACCGATTTCAGATGGTGC 59 58344015 58344033 ACATGACCTCTTGTGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb13 ENSRNOG00000017967 ENSRNOT00000024200 3 1 1 84 17 70226274 70233958 AGATGTGGGTTTCTGGGTG 60 70226208 70226226 GTTGATCAGCTGCTGAAGC 60 NA Rattus norvegicus 81 Wdr12 ENSRNOG00000017340 ENSRNOT00000023463 2 1 1 80 9 66862982 66864583 AAGACATTTCATCGGAAGAGGT 60 66862923 66862941 GGAACATGCATTGCTCTGG 60 NA Rattus norvegicus 81 LOC686641 ENSRNOG00000005921 ENSRNOT00000067444 3 1 1 60 3 76237610 76237628 AGCTTGGAGAACAACACTG 58 76237651 76237670 CTGGATGATCACTGAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr252 ENSRNOG00000036787 ENSRNOT00000055174 1 1 1 60 1 172395143 172395162 ACAGAAAGCCTTCTCTACCT 58 172395102 172395122 GGTTCCATAGAACAGAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spaca1 ENSRNOG00000008232 ENSRNOT00000010909 2 1 1 80 5 49424294 49424774 AATCATAAATTGGGCGGCAG 59 49424233 49424252 ATAGAGCTCATCTCGGACTG 59 NA Rattus norvegicus 81 Parp3 ENSRNOG00000012865 ENSRNOT00000017224 1 1 1 80 8 115176188 115176359 GAGTACAAGGCCATACAGAC 58 115176127 115176145 CACTTTCCAAACATGCTGC 58 NA Rattus norvegicus 81 Tas2r104 ENSRNOG00000032448 ENSRNOT00000048210 2 1 1 60 4 165809488 165809507 CAGAAGGAGGATGCAATCCA 60 165809447 165809467 CACGTGAACTTCTGTGTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arfgef2 ENSRNOG00000007485 ENSRNOT00000010054 1 1 1 80 3 163624687 163624709 GACACCATAAAGACACTCATCAC 60 163624748 163625588 GCACTTCAAGATCTCATGCC 59 NA Rattus norvegicus 81 Arfgef2 ENSRNOG00000007485 ENSRNOT00000010054 3 1 1 80 3 163630584 163631441 ACATTGTCTCAACCATCTTCC 58 163631483 163631501 ACTCAGACAAGCACTTCAC 58 NA Rattus norvegicus 81 RGD1562558 ENSRNOG00000029613 ENSRNOT00000043588 2 1 1 60 15 27408212 27408231 TTTATTCAGAAGTGTGCCCA 58 27408171 27408189 GTCCAGTCTTATGCTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 1 2 2 80 9 17225395 17227329 CTCTACAGCCTGAACTGCA 59 17227372 17227391 ACTCACCACAGATGTCTGTG 60 NA Rattus norvegicus 81 Tcf15 ENSRNOG00000000012 ENSRNOT00000000013 2 1 1 69 3 147643798 147643816 CTTCTGTCTCAGCAACCAG 58 147649111 147649129 CCTCACTTTCAAGCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Suv420h2 ENSRNOG00000017508 ENSRNOT00000023744 3 1 1 81 1 72671233 72671251 CGTCATGTACTCCACTCGA 59 72671036 72671188 GTTGGGTTTGCAGTCATGG 60 NA Rattus norvegicus 81 LOC100363914 ENSRNOG00000048882 ENSRNOT00000071450 1 1 1 80 12 2948849 2950292 TCATTGTCAAAGGCACTGAG 59 2950335 2950353 CCTGATCCAGTTTCTGGTG 58 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000027259 1 1 4 60 1 215411757 215411775 CTGCAAGCCTGTATGTTGC 60 215411715 215411733 GGAGCAGTTACAGACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000027259 2 1 4 61 1 215411754 215411772 CAAGCCTGTATGTTGCTGC 60 215411711 215411729 AGCTGGAGCAGTTACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl15 ENSRNOG00000004926 ENSRNOT00000006670 2 1 1 80 3 100222456 100277880 CAGAAATGTACCCGACACAG 59 100222395 100222414 GCACTCCAGCTTTCATTAGC 60 NA Rattus norvegicus 81 Rxfp2 ENSRNOG00000000897 ENSRNOT00000001197 1 1 1 80 12 6036937 6036957 TCCAACCCTCTTCTGTATGTC 59 6033653 6036899 CTCTATCCTTTCCAGGTCTAGAG 59 NA Rattus norvegicus 81 Vrk3 ENSRNOG00000026517 ENSRNOT00000035748 2 1 1 84 1 100767697 100767715 CTGACAGACCAGAATGGGA 59 100767763 100768765 TAGGCTCAGCTGCATAGAG 59 NA Rattus norvegicus 81 Tas2r102 ENSRNOG00000030993 ENSRNOT00000050359 3 1 1 60 4 166923687 166923705 TTGGGAATCTGAGCAATGG 58 166923729 166923747 CGTTTAATGACCCAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmx4 ENSRNOG00000024852 ENSRNOT00000034567 2 1 1 85 3 127545265 127561968 TTCAAGAACCAGGTTTGAGTG 59 127544496 127544514 GTAACGGCGGAATATCCCA 60 NA Rattus norvegicus 81 Arl3 ENSRNOG00000019973 ENSRNOT00000027093 3 1 1 107 1 266314478 266314496 CAGACCATACTGGAGAAGC 57 266298032 266300102 AATTCCGTTAGCTCCTGAC 57 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171,ENSRNOT00000016341 3 2 2 80 3 11326028 11326047 CCGATGCTGATCTCATTCAG 59 11326334 11326453 CAGTCGATGAGAAAGTCTTGG 59 NA Rattus norvegicus 81 Stoml3 ENSRNOG00000011006 ENSRNOT00000014765 3 1 1 81 2 142717439 142726433 AAGAACAATTTAGTGGGCACC 59 142726475 142726494 GCATCAACAGGAAGGAAAGG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 2 2 2 80 4 77277923 77278629 AAACTACTGATTCAGGCGG 58 77278672 77278691 GACTTCACCAAGTAACTGCT 58 NA Rattus norvegicus 81 LOC100912292 ENSRNOG00000043300 ENSRNOT00000066977 2 1 1 209 5 58018833 58019697 CTCAACTCAGGCTCAGGAC 60 58018642 58018660 ACTATGGCAATGAGAGCCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Psmg3 ENSRNOG00000001273 ENSRNOT00000001716 3 1 1 101 12 16899706 16899724 GTTAGTCTCCTTGGAGCCC 60 16899788 16901478 AAGACATGGATGAGAGGCTC 59 NA Rattus norvegicus 81 Kctd4 ENSRNOG00000050996 ENSRNOT00000075786 3 1 1 60 15 58017083 58017104 GAAACTCTTAAGTTTGAGGCCA 59 58017125 58017143 TGGTCAGCAGTCTAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl3 ENSRNOG00000019124 ENSRNOT00000025938 3 1 1 96 1 265885642 265885876 TGGTTGAACTCGGAGACAC 60 265885934 265885954 CTCGTAAACAGTAGCACTGTG 59 NA Rattus norvegicus 81 Peo1 ENSRNOG00000014935 ENSRNOT00000031018 1 1 1 80 1 264759799 264760205 ACAGAGCATCAGGTCTGTC 59 264760246 264760267 AAGTTGTCGATGACTACATGAC 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256,ENSRNOT00000080524 2 2 2 80 9 82724299 82724321 GGCCTATAACCTTCTAGAAGGAC 60 82724359 82724487 CCTTCCAGATAGAGCTTACGG 60 NA Rattus norvegicus 81 Taf1c ENSRNOG00000015632 ENSRNOT00000020990 3 1 1 86 19 52248503 52248611 TGGTTGATATTCAGGGCCC 60 52248435 52248453 ACACCCGTTCTCCTTTCTG 60 NA Rattus norvegicus 81 C1galt1c1 ENSRNOG00000002536 ENSRNOT00000003449 3 1 1 80 X 124922923 124926073 TCTAGATGCGGAAACATGCT 60 124922862 124922881 GATCAAGGCACAGAAGATGC 59 NA InUTR Rattus norvegicus 81 Dennd4a ENSRNOG00000011739 ENSRNOT00000016260 1 1 1 80 8 70371409 70372614 TCTAGTTCCTTGTCAGAGAATGAG 60 70372650 70372671 AGTGGAAGAACTCTGGTAACTG 60 NA Rattus norvegicus 81 Rhox12 ENSRNOG00000040033 ENSRNOT00000061546 2 1 1 81 X 124252016 124252036 TAAGTACCCGGATGTGATCAC 59 124247259 124251423 CTTAAACCATCTCTTCACTCTGG 59 NA Rattus norvegicus 81 LOC100362601 ENSRNOG00000028909 ENSRNOT00000049011 3 1 1 97 1 225761762 225764647 GCTATGAAACTAATGCTGGCA 59 225764705 225764724 CTCAAGTTCCTTCCTCAGGT 59 NA Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000076247,ENSRNOT00000021956 2 2 2 61 9 43131311 43131329 TGGACCCTTCAAAGATGTG 57 43131119 43131137 TTTGGGAACAACAGGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Epgn ENSRNOG00000002782 ENSRNOT00000003720 2 1 1 80 14 18630910 18634151 ACTTAACATCACAGAAGCTGAC 59 18630851 18630872 CTATTATGGTCTTCCAGACAGG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076057,ENSRNOT00000088114 1 6 7 86 X 70645260 70645278 GGCAGACATACGAACAAGC 59 70645322 70646347 GTACAATGGCTGTAAAGTATTCTCC 60 NA Rattus norvegicus 81 LOC100912022 ENSRNOG00000046099 ENSRNOT00000073972 1 1 1 60 4 1513761 1513783 GGACTCAGTAAATGTCTCATTGG 59 1513803 1513821 AGGCTGCTCTGTTAATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 2 1 1 76 19 54553783 54574634 AGACCTACTCGGATGGAGG 60 54574673 54574692 ACTCTGTCGTACACCATAGC 59 NA DesignNoJunction Rattus norvegicus 81 Susd4 ENSRNOG00000003562 ENSRNOT00000052407 3 1 1 80 13 101305497 101305515 CCTGACACGATTTCAAGCA 59 101305558 101306596 CATGAGTGGGATCTCATCTG 58 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 1 2 2 80 10 105319450 105320988 ACTTGTCAAATGTGCTGAGG 59 105319389 105319408 GTGAACTCGACGTTGTAGTG 59 NA Rattus norvegicus 81 Usp10 ENSRNOG00000016509 ENSRNOT00000022432 2 1 1 80 19 52591595 52591615 ACAGATGGAAGTCAAAGAAGG 58 52591656 52596981 ACAGTCTCCAATAACTCTGC 57 NA Rattus norvegicus 81 Rn60_12_0168.1 ENSRNOG00000024366 ENSRNOT00000031085 3 1 1 60 12 14736669 14736689 ACATCCTCAAGGATAAGTGGT 59 14736711 14736729 TGGTTGGAGAGCAAGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myot ENSRNOG00000050004 ENSRNOT00000016511 3 1 1 80 9 37740249 37741762 ATGGACTTTAAAGTGAGTGGAC 58 37741802 37741821 CAACTCATCTGATTGCACCA 59 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 1 3 4 85 2 250224120 250224139 ACATGATAGACCCACAGCTC 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Upk1a ENSRNOG00000024331 ENSRNOT00000033621 3 1 1 81 1 89061315 89061333 CATCAGCCATGCCATTGAC 60 89061125 89061270 CATCACAGGGAGAGTCCAC 60 NA Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622,ENSRNOT00000045954 2 2 2 80 5 139401810 139401828 GTTGACTCCTCCGAAATCC 58 139401872 139416779 CAGCCGAAATCCTAGAGGT 59 NA Rattus norvegicus 81 Wap ENSRNOG00000055684 ENSRNOT00000091193 2 1 1 80 14 86898702 86898720 CAGTGATTGTTCTGGCACC 59 86898096 86898660 GTAGGAGATTCTGGTTCTGGG 60 NA Rattus norvegicus 81 Mtss1l ENSRNOG00000017500 ENSRNOT00000023645 2 1 1 81 19 40908175 40908193 GTACTCCAGTGGCTACAGC 60 40907920 40908130 GTCGTAGTCTGAGCCTTGG 60 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 3 2 2 93 15 20777232 20778256 TTTCCATCACGAAGAACATCTG 59 20777160 20777178 ATTCTCTGGGATGCTGCTG 60 NA Rattus norvegicus 81 Larp1b ENSRNOG00000038366 ENSRNOT00000090861 3 1 1 80 2 127863199 127863219 ACAGCTCTAGATGTCAACCTG 60 127863261 127865663 TATCCCGTCTCCAACTTCG 59 NA Rattus norvegicus 81 Afm ENSRNOG00000002878 ENSRNOT00000060535 2 1 1 80 14 19083796 19084666 TACAACGCCATTTCCTTGTC 59 19083735 19083756 TTTCCTTACTAAGGGAGACCAG 59 NA Rattus norvegicus 81 RGD1561415 ENSRNOG00000017867 ENSRNOT00000024125 1 1 1 80 19 37675379 37675635 AGAGATCCCTGAGTGTCCA 59 37675679 37675697 CACCTGTCTTCACCTGGAG 60 NA Rattus norvegicus 81 Olr594 ENSRNOG00000058143 ENSRNOT00000091187 3 1 1 60 3 75988655 75988673 AAGTGACTGCTGCTATGAG 57 75988695 75988715 CTTCTATGCCTACACAAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata3 ENSRNOG00000017540 ENSRNOT00000023581 2 1 1 170 9 93030903 93034129 CAAACGGATGATCGGAGAC 58 93034263 93034281 GCGGTGAAATGGAATTCCT 59 NA InUTR Rattus norvegicus 81 Dctn3 ENSRNOG00000014208 ENSRNOT00000019561 1 1 1 80 5 58104973 58106596 TCTAGGAAGGTAGCTGATGG 58 58104912 58104930 AATCTTCACCCTCTCCCTC 58 NA Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 3 2 2 80 8 48442670 48442688 AGCCTTCCCTAACATCTGG 59 48442732 48442834 CTTGTCAGGCTCTTGTAGC 58 NA Rattus norvegicus 81 AABR07072400.1 ENSRNOG00000033214 ENSRNOT00000041866 1 1 1 60 14 43694402 43694423 TCTTCTTGCCGTTCTTAATGAG 59 43694363 43694381 CAGCCAAATTCTGCCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces4a ENSRNOG00000014257 ENSRNOT00000019169 1 1 1 80 19 37105230 37105830 CGATATCACCGAGATGCTG 58 37105873 37105892 TCGAGGTTTGACAATGATGC 59 NA Rattus norvegicus 81 AABR07065012.1 ENSRNOG00000032248 ENSRNOT00000047825 1 1 1 60 6 103948945 103948963 ATAGAGGGTCATGTGTCGG 59 103948903 103948921 TTGTTCCCACCAAAGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr4 ENSRNOG00000001181 ENSRNOT00000068289 1 1 1 91 20 10248058 10248076 GAGACGTCTACTCCTTCCC 59 10247393 10248003 ACTCACAGCCACATCTAGC 60 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 3 2 2 83 6 111184621 111184642 GAAGTACTGTGTAGGAGATGAG 58 111185568 111186233 TCCACCTTGAACCTTTCAG 57 NA Rattus norvegicus 81 Rn60_X_0730.3 ENSRNOG00000051117 ENSRNOT00000076480 2 1 1 60 X 72059403 72059423 TACATCTCCAAGATGTTCCTG 57 72059363 72059381 CAAATGGGTTCCTCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r10 ENSRNOG00000011191 ENSRNOT00000014883 3 1 1 81 1 86115260 86115281 CTTCATCAAGTTCAAATGCGAC 59 86115320 86122656 CCTTCAGGAAAGTGTTAAGCTG 60 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 1 2 3 80 3 113302831 113303101 TCTGGCACTATGATGGAACTC 60 113302771 113302792 CATCTTCATCTTCTGCTTTGGG 60 NA Rattus norvegicus 81 Polr3a ENSRNOG00000010008 ENSRNOT00000013501 2 1 1 80 16 739515 739674 AATACTAAAGCCTGTCACCCT 59 739455 739473 CTCACTGGATTGTCGTCAC 58 NA Rattus norvegicus 81 Tex26 ENSRNOG00000000905 ENSRNOT00000061246 1 1 1 80 12 6679259 6679278 TTCCTGACGATCCTAGACTC 58 6672589 6679217 AATCTGTCGGTCTTTGTAGG 57 NA Rattus norvegicus 81 Itgb3 ENSRNOG00000048449 ENSRNOT00000073350 2 1 1 80 10 92706936 92706955 GTGAGTGTGATGACTTCTCC 58 92745189 92745399 CACAATCTCCACAAGAGCA 58 NA Rattus norvegicus 81 Tcp11x2 ENSRNOG00000011034 ENSRNOT00000052009 2 1 1 80 X 106109265 106109382 ATTCCCTGAGACTCTGCTG 59 106109203 106109222 GAGGCTAGAATGGTCAAGTG 58 NA Rattus norvegicus 81 AABR07064998.1 ENSRNOG00000038308 ENSRNOT00000058328 3 1 1 99 6 103807507 103807525 CTGTAGAGGCTGACGTGTC 60 103807228 103807447 TCCTTCTGTTCCCTATTCTTGG 60 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 3 2 2 81 6 1581574 1583197 GTTGTCCTGTCAGCTTTGG 59 1581511 1581532 TAGGTGCTTTGTAAGAATGGAC 59 NA Rattus norvegicus 81 Pip5kl1 ENSRNOG00000048676 ENSRNOT00000074122 3 1 1 81 3 11594956 11595158 TTCACAAAGAGGGCTTCGA 59 11595203 11595221 TCTTCAGTCAGGCCAATGG 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 2 6 7 84 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920368 102920386 CATGCAGAAGATCCAGTGC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185,ENSRNOT00000088661,ENSRNOT00000040742 1 3 3 80 X 120932157 120933948 TAGTGGTGAACACATGGGAG 60 120933991 120934009 TTGTCTTGTCCAGCTGAGG 60 NA Rattus norvegicus 81 Cstf1 ENSRNOG00000004775 ENSRNOT00000055101 2 1 1 80 3 170382627 170382645 ATCAACGAGATCAAGCCAC 58 170382689 170385378 ATCGTTCTCCATCCCTAGC 59 NA Rattus norvegicus 81 Olr211 ENSRNOG00000048223 ENSRNOT00000047852 3 1 1 60 1 170800798 170800819 GTGGTCTTCTACTATGGGTCTG 60 170800759 170800778 TCATTGTCTTGGAGTTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr641 ENSRNOG00000030406 ENSRNOT00000049517 2 1 1 60 3 76926095 76926115 TTGGGTCTTACAGAGAATCAG 57 76926055 76926075 ACATGATTAGAAGCACAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab5 ENSRNOG00000022536 ENSRNOT00000031618 1 1 1 80 10 63056250 63056270 CTTGCACTCTAGATGATGCTC 59 63056309 63057128 CCACTACTGTAAAGCTGATTCC 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229,ENSRNOT00000014023 1 2 2 80 4 7706635 7706653 TAGCTCAGAAAGCACTGGA 58 7706697 7707546 TTGCATTAGCAACCAGCAG 59 NA Rattus norvegicus 81 Afp ENSRNOG00000002889 ENSRNOT00000003879 2 1 1 80 14 19154312 19154332 CCTTCCACTTTCCAGAAACTG 59 19153135 19154273 CGTAGATGAACGTGTTTATGGA 59 NA Rattus norvegicus 81 Treh ENSRNOG00000052010 ENSRNOT00000090203 3 1 1 80 8 48992262 48992280 ATCTCAGATTCCAGGCTGC 60 48992321 48993349 TTCTGCTTTCATCTTCTTTCCC 59 NA Rattus norvegicus 81 Tex19.2 ENSRNOG00000036671 ENSRNOT00000054927 2 1 1 193 10 110307580 110307598 GGCCTGTCTACTTCTCCAG 59 110307284 110307302 CATGGACAAGCTGGTACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AC094212.1 ENSRNOG00000055222 ENSRNOT00000091773 3 1 1 74 8 26342525 26345544 AATTCAAGGAAGTTCTTCGTCG 59 26342472 26342490 GCAGATGAGTTCTCCCAGG 60 NA DesignRelaxed Rattus norvegicus 81 Skp2 ENSRNOG00000059059 ENSRNOT00000089178 1 1 1 80 2 58511387 58511407 CAACTCAACTACCTCCAACAC 59 58507954 58511348 GATTTCTCCGAGTTCAAGTAGC 59 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747,ENSRNOT00000082150 3 2 2 80 12 44935813 44935833 GAGGGTTTAAGCTTGTGATCC 59 44935873 44936872 TCTCAATCACTCGTCTCAAGG 60 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000001085 1 1 3 80 20 3398701 3399021 GGCCTCAAACAGGTTTATTACC 60 3398642 3398661 AAAGAGTCTTAGAGCCCGAG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431,ENSRNOT00000031653 1 2 2 80 12 2214015 2214037 GAGTATGAGAACATAGCCTTCAG 59 2214075 2215091 CTTGAACTTGACTTGTTGTGG 58 NA Rattus norvegicus 81 Rhbdf2 ENSRNOG00000011459 ENSRNOT00000068026 2 1 1 81 10 105577785 105577803 AAACAGAGGCGTGTATGAG 58 105577597 105577740 GTGGATGAGGTCAATCGAG 58 NA Rattus norvegicus 81 Skap2 ENSRNOG00000012228 ENSRNOT00000016608 1 1 1 80 4 81838326 81866902 GAGGAACTTCCAGAGGAGG 59 81838264 81838282 CTGTACACTGTCCCGACTC 60 NA Rattus norvegicus 81 AABR07052768.2 ENSRNOG00000055669 ENSRNOT00000068048 1 1 1 60 3 74567493 74567514 CCAATGTATTTCTTCCTCACCC 59 74567454 74567475 TGATGACAGTTGAGTAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcp1b ENSRNOG00000007340 ENSRNOT00000009832 3 1 1 80 4 151258664 151258685 GCCCATTACTAAAGACTTGGAC 59 151258723 151271884 ATTCCATAAATGGACAGTGTGC 59 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 1 2 2 80 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117910 164117928 CAATGGCATTACCACTCCC 59 NA Rattus norvegicus 81 Nrxn3 ENSRNOG00000047574 ENSRNOT00000064872 3 1 1 80 6 114018599 114018618 GTTTCATCTGCTGAATGCTC 58 114018658 114066443 AAGACTCTTATCTGACCTACCT 58 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944,ENSRNOT00000083419 3 2 2 80 8 53735425 53736627 GGACTCAACAATACAGACCAG 59 53736666 53736687 GTAGAATGAGACAATGGAGGAG 58 NA Rattus norvegicus 81 Acmsd ENSRNOG00000003884 ENSRNOT00000005206 1 1 1 80 13 44459727 44468286 ATAGGGAAGGATAGAGTTATTCTGG 59 44468322 44468342 AGACTCTATCAACTTCCCAGG 59 NA Rattus norvegicus 81 Slc22a6 ENSRNOG00000018215 ENSRNOT00000024757 3 1 1 80 1 224830496 224830633 AATACCGAAGAGCCATACGA 59 224830675 224830694 ATGCAGTTGAAAGAGGAAGC 59 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 2 2 2 81 4 78514249 78514267 CATTCTATGGCTGAGCAGG 58 78514311 78514632 TTACAGCCAAAGGATACCTG 57 NA Rattus norvegicus 81 Grem2 ENSRNOG00000003616 ENSRNOT00000004803 2 1 1 84 13 92897894 92987901 TCATTGCAGGATGTTCTGGA 60 92897829 92897847 CCTGTTCTTCCGTGTTTCG 59 NA InUTR Rattus norvegicus 81 Lmtk2 ENSRNOG00000025155 ENSRNOT00000046381 3 1 1 80 12 12432373 12432392 CGGAACTGTTATCTCACCTC 58 12430362 12432333 GTAATCCTCCTTGTATCTGCTG 59 NA Rattus norvegicus 81 Tnn ENSRNOG00000002548 ENSRNOT00000076616 2 1 1 60 13 77887454 77887472 TGTTGTCTTAGTTGCACCA 57 77887412 77887430 TTAAAGGGCAAGACTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnn ENSRNOG00000002548 ENSRNOT00000076616 3 1 1 60 13 77887450 77887470 TTGTCTTAGTTGCACCAACTC 59 77887410 77887429 AGTTAAAGGGCAAGACTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 2 2 2 82 3 101908248 101910818 CAGAAACGAACCAGTTCTGC 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Hbg1 ENSRNOG00000030879 ENSRNOT00000039946 2 1 1 81 1 168994172 168994193 GGCTGCTATCATAAGCATATGG 59 168993982 168994132 GTAAACAATCAGGAGCCTTCC 59 NA Rattus norvegicus 81 Naga ENSRNOG00000008064 ENSRNOT00000068020 1 1 1 80 7 123567866 123567884 GACTGGTTTGTGAAACACC 57 123565727 123567822 GATGAGCAGCATATCTGGG 58 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 3 2 2 82 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277525 171278571 GCTTCAGAACTTGCACCTG 60 NA Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 3 2 2 81 1 101217210 101218539 AAGCTGAAGGACCAAGTCTC 60 101218583 101218601 AAGGTGCAGAGATGAGCTG 60 NA Rattus norvegicus 81 Id1 ENSRNOG00000021750 ENSRNOT00000029660 3 1 1 167 3 148215953 148215972 GAACTCTGAGTCTGAAGTCG 58 148216323 148216341 TCCATCTGGTTCCTCAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Xkrx ENSRNOG00000054136 ENSRNOT00000077996 3 1 1 80 X 104979789 104983823 CCTGTTATCAGATGTTTGGAGG 59 104979730 104979749 GCTGACATATGGCTCTTCCT 60 NA Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 2 2 2 81 10 86518370 86518391 CCATCTTATAAGTGCCATTCTG 57 86518432 86519332 AAGGATTCACTTGAAAGGCT 58 NA Rattus norvegicus 81 March5 ENSRNOG00000017396 ENSRNOT00000023562 1 1 1 80 1 255861663 255861685 CCTACTATTGCGACAATAGTTGG 59 255861725 255862318 AATTCCGCCCAAGATTGTC 59 NA Rattus norvegicus 81 LOC365250 ENSRNOG00000022680 ENSRNOT00000029920 1 1 1 80 1 103717188 103717225 TGGCAACACTCTGTTACTG 58 103717126 103717147 ATTTCCTTCACTAAGGGTACTG 58 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 1 2 2 80 9 74047917 74047936 TTTCCGAATCCTTATGCCGA 60 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Mettl17 ENSRNOG00000025512 ENSRNOT00000064907 3 1 1 80 15 28293496 28293514 TTGTCACCTCTGTTGTCCA 59 28293557 28293656 CAGCGATATAAATCCCTGCC 59 NA Rattus norvegicus 81 RGD1560186 ENSRNOG00000031098 ENSRNOT00000049634 1 1 1 60 13 110372244 110372262 CCACCTTCAGAAGTTGACC 58 110372285 110372304 ACACTTTCTCTTGCACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmpk2 ENSRNOG00000007690 ENSRNOT00000052003 1 1 1 80 6 45689098 45689118 TCTTTGGGCAATTATCTCGTG 59 45689160 45691584 ATGCCAGTACCTGTCTACG 59 NA Rattus norvegicus 81 Olr557 ENSRNOG00000031264 ENSRNOT00000050634 1 1 1 60 3 75354765 75354785 ATTCCAGTAGAAATTGGGCAG 58 75354807 75354825 TGTTAGAAGCACAGAAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 3 2 2 80 7 11306847 11307048 ACCTTATCTTACAGATCAACGG 58 11307088 11307107 CCTCTGACTTCTCAATGAGC 58 NA Rattus norvegicus 81 Olr819 ENSRNOG00000005469 ENSRNOT00000007235 1 1 1 81 4 72637904 72637922 CCTGAGGAATGCTGAGGTC 60 72637964 72638136 ATGGATGCACCATATCAATTGG 59 NA Rattus norvegicus 81 Olr318 ENSRNOG00000049602 ENSRNOT00000029224 3 1 1 60 1 228225723 228225741 TCATCGTCCTTACCATCCC 59 228225681 228225702 GCATTCACAATGAAGACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a42 ENSRNOG00000020345 ENSRNOT00000027615 2 1 1 85 16 20981083 20981493 CCCAAGGAGATGTACAGCA 59 20981540 20981560 GTGAACCCGAAATAAAGGGTC 59 NA Rattus norvegicus 81 Adap1 ENSRNOG00000054033 ENSRNOT00000089590 2 1 1 80 12 17460474 17460494 TCTTAAGTCGGAAGTTTGTGC 59 17460536 17461585 CCTTAGGCTCCTTAGCGTC 60 NA Rattus norvegicus 81 Trhr2 ENSRNOG00000012789 ENSRNOT00000017317 3 1 1 89 19 55182149 55183525 TGAGTCTTCACCAGGTTGG 59 55182078 55182096 GAGAACCACGGAGTAGCAG 60 NA InUTR Rattus norvegicus 81 ste2 ENSRNOG00000001957 ENSRNOT00000002680 2 1 1 80 14 22085533 22087309 TGAGGATATGAAAGAGGATATCCG 60 22087347 22087366 ACTAGCTCTGCTAATGGGTC 59 NA Rattus norvegicus 81 Rps7 ENSRNOG00000008551 ENSRNOT00000011333 1 1 1 83 6 47899983 47900001 GTGTGAAACTGGATGGCAG 59 47899626 47899936 AAGTTTCGACCTTGTGCTC 58 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450,ENSRNOT00000028780 2 2 2 80 2 198434471 198434489 GGCATCTATCACTGCTCAG 58 198432384 198434427 GGCAAATAGCTCTTTCACG 57 NA Rattus norvegicus 81 Wsb1 ENSRNOG00000012929 ENSRNOT00000017949 1 1 1 80 10 66597356 66602862 AACGAGAAAGAGATCGTGAG 58 66597295 66597313 ACCACCACATTTCTTGTCG 58 NA Rattus norvegicus 81 Fabp1 ENSRNOG00000006675 ENSRNOT00000008840 1 1 1 80 4 99064846 99064865 GATCCACAATGAGTTCACCT 58 99064907 99066150 ATCTTAACCACTGCCTTGAC 58 NA Rattus norvegicus 81 Heatr5a ENSRNOG00000006483 ENSRNOT00000035309 3 1 1 80 6 72700274 72701236 ACTTACTGAAGTATGTGGCTG 58 72700214 72700235 CTCCCAACACTAATGTTAGGAC 59 NA Rattus norvegicus 81 Dnajc24 ENSRNOG00000004842 ENSRNOT00000006431 3 1 1 80 3 96030005 96030026 AAGATGAGCTAAGAAATGTGGG 59 96025781 96029967 AAGACTCCTCATCTTTGTTCCA 60 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 2 1 2 60 15 28018085 28034118 CAGGCACTTTCTAGGTGAC 58 28034142 28034160 AACAAGAGCAGAAGCAAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Scrn2 ENSRNOG00000010214 ENSRNOT00000013580 2 1 1 87 10 84970226 84970244 AGTATGGTGTCAGTCCTGC 59 84970295 84970395 TGAATACCGACCTGGATGG 59 NA Rattus norvegicus 81 Psmc1 ENSRNOG00000003951 ENSRNOT00000005329 2 1 1 80 6 124133263 124135311 GACATCAAGGCAATCTGCA 59 124135353 124135373 CTTGAAGTCTTCGTTTGTCAC 58 NA Rattus norvegicus 81 Btc ENSRNOG00000002728 ENSRNOT00000003686 1 1 1 80 14 18263354 18263375 CAATACAAGCATTACTGCATCC 58 18263416 18267272 GCCTTTCTCACAGATGCAG 59 NA Rattus norvegicus 81 Gk2 ENSRNOG00000029397 ENSRNOT00000044244 1 1 1 60 14 13751618 13751636 CCTATACAATGCCGTGGTG 58 13751657 13751678 ATTGAGACTCTCCACAGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014573.1 ENSRNOG00000023418 ENSRNOT00000038393 3 1 1 60 14 21770833 21770855 CCACAAATCCTTCAGAAGAATCC 60 21770795 21770815 CTGGAAGTTGTAGGACTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anlnl1 ENSRNOG00000018113 ENSRNOT00000024361 1 1 1 82 17 66550897 66551127 CCATTAGCAACAAGTACTGC 57 66551171 66551190 TTGGAAACATCATTCAGGGT 57 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000085000 1 1 2 80 10 85629286 85631292 GAAGTAAGAATCAGCCCTTCTG 59 85631333 85631351 CTTCGGCCTTGAACTTGAG 59 NA Rattus norvegicus 81 AABR07017693.1 ENSRNOG00000052828 ENSRNOT00000060399 3 1 1 80 15 30147483 30147755 CCAATTAAACTGGGTGAGCA 59 30147422 30147441 GAAGCTATGGATCCCTCTGG 60 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135,ENSRNOT00000079732 1 2 2 80 5 145154473 145160399 AGAAGGGCACTGATAATCTG 57 145160441 145160460 TCTCGATCATTTCAGCAGAC 58 NA Rattus norvegicus 81 Mir216b ENSRNOG00000036371 ENSRNOT00000054490 1 1 1 61 14 113101117 113101138 GATGTCACTGAAGAAATCACAC 58 113101159 113101178 TGCTTGATGTTGTCAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 3 2 2 82 6 122955500 122964945 TCTACGAGGAAATGAACAACAG 59 122964986 122965006 GGCTTCCACATGAGTATTGTC 59 NA Rattus norvegicus 81 Ccdc141 ENSRNOG00000012580 ENSRNOT00000037015 1 1 1 80 3 63912917 63914457 CTAAGGAAGGTGGAAATGTCAG 59 63912858 63912878 TTCAGAAGGACTAGAACCGAC 59 NA Rattus norvegicus 81 Dnah3 ENSRNOG00000050426 ENSRNOT00000073205 3 1 1 80 1 189843973 189843994 GACTGCTGGCAATTAATAAAGG 58 189839482 189843933 GAGGATAGATTCCACCTTGG 57 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000046643 ENSRNOT00000073099 1 1 1 80 12 19111989 19114340 GCTCCTCTACCTATATGGAACTC 59 19111931 19111950 AAGAAAGGCAAAGGTTTGGG 59 NA Rattus norvegicus 81 Guk1 ENSRNOG00000002928 ENSRNOT00000003926 1 1 1 80 10 45536276 45536294 GTTTGACCTGGTGATCGTC 59 45535939 45536235 TTCTTGATTTCCTCAGACAGTG 58 NA Rattus norvegicus 81 Or7e24 ENSRNOG00000046041 ENSRNOT00000072834 1 1 1 60 8 20397676 20397696 AGTGAGCCCTATGCTTAATCC 60 20397636 20397660 GGCATTACTGATATCTCTATTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007928.1 ENSRNOG00000047601 ENSRNOT00000072217 2 1 1 60 2 35392318 35392338 ATGATCCTGCTCATCTCAGTC 60 35392358 35392378 TGCTGAGGAAATAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasd1 ENSRNOG00000003348 ENSRNOT00000004475 1 1 1 81 10 46331550 46331706 TCTATCCTCACAGGAGACGT 60 46331488 46331506 GTTTGAGCCTTTGCACCTC 60 NA Rattus norvegicus 81 Zfp608 ENSRNOG00000023197 ENSRNOT00000033254 1 1 1 80 18 49841799 49891342 ACAGAAGAAGGTGTCCTAGTG 59 49841739 49841757 ATGCTTGGTGCAGTCTAGG 60 NA Rattus norvegicus 81 Rqcd1 ENSRNOG00000016034 ENSRNOT00000021548 1 1 1 81 9 81794986 81795005 CAGCACACCAATCTAACAGG 59 81795049 81799431 AAAGCTGACCTGGTCTCTG 59 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 2 2 2 80 13 48840350 48848609 GTCTTCAAGAGGACCCTGG 59 48840288 48840306 GATGACAGCAAACACCAGG 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 2 4 4 80 4 85682355 85682374 GCTCAAGTAGGTGAGATGGT 59 85682416 85684389 TTCTGTCATCCAGACTTGGT 59 NA Rattus norvegicus 81 Sfxn2 ENSRNOG00000049308 ENSRNOT00000071243 2 1 1 81 1 266341355 266341375 GATCCTCGAACTGTGTTTGTG 60 266341418 266341571 GCATTAGTCCCATCCTGCT 60 NA Rattus norvegicus 81 AABR07017656.1 ENSRNOG00000047226 ENSRNOT00000073230 3 1 1 80 15 29712402 29712597 CAGATTTGCTGGGTGAGAG 58 29712340 29712359 CAGAGAAGAATTGGTTCCCT 57 NA Rattus norvegicus 81 RGD1305928 ENSRNOG00000057264 ENSRNOT00000087338 1 1 1 81 7 140248949 140265589 AGAAACAAACCAGAAGGATGC 59 140265627 140265650 GTTCTGGTGGACAGAATAATTACC 60 NA Rattus norvegicus 81 Aes ENSRNOG00000052025 ENSRNOT00000092061 2 1 1 80 7 11015279 11015298 GAGATGCAAAGGCATTACGT 59 11014536 11014709 CACAATTTCAGCCTGTTTGTG 59 NA Rattus norvegicus 81 Rn60_13_0855.2 ENSRNOG00000051083 ENSRNOT00000076593 2 1 1 60 13 80539437 80539584 CCTGCAAAGAAGAATGTGCT 59 80539606 80539625 CACTCCTGTGATTTCTTGCA 59 NA DesignRelaxed Rattus norvegicus 81 Cactin ENSRNOG00000039852 ENSRNOT00000027926 2 1 1 80 7 11264289 11264307 GCAGAGCACTTTAAGACCT 58 11263876 11264245 GATTCGGATCTTGGAACGA 57 NA Rattus norvegicus 81 Rufy2 ENSRNOG00000000390 ENSRNOT00000037409 1 1 1 80 20 27237601 27238198 CTAAACAGACAACTCAACAGCA 59 27237542 27237565 GATCAGCTTAGTGTTTGACTTCTC 60 NA Rattus norvegicus 81 Cd55 ENSRNOG00000003927 ENSRNOT00000005284 1 1 1 80 13 47137867 47139060 CAGTTAAAGTTCCAGCAACAC 58 47137807 47137828 CTCTGTCTTTAGATGTTCTCGT 58 NA Rattus norvegicus 81 Wisp3 ENSRNOG00000000597 ENSRNOT00000000735 2 1 1 90 20 44243666 44243684 AAGGAAGATCGATCCACCG 59 44241067 44243613 GAGATTCCTGTAAGCTGGCA 60 NA Rattus norvegicus 81 C5ar1 ENSRNOG00000047800 ENSRNOT00000073034 1 1 1 62 1 78195120 78195138 ATCGTTGGTCACCACAGAG 60 78188473 78188492 CTGCTGTCGTTACTTATGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr539 ENSRNOG00000009969 ENSRNOT00000013215 2 1 1 60 3 74631751 74631769 TTGGTGGGAAATCTGGGAC 60 74631709 74631729 TAGGTGTATGGAGTTTGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hps3 ENSRNOG00000031406 ENSRNOT00000050440 3 1 1 80 2 104805254 104806261 ATTCAGAGATGCAGCTGGT 59 104805192 104805213 TAGGAACAATCTGTCCTTTCCA 59 NA Rattus norvegicus 81 Sdhd ENSRNOG00000022980 ENSRNOT00000059169 1 1 1 60 8 55037570 55037588 TTCTCTTAAAGCTGGGCGT 59 55035315 55037546 CTTCGGAGTGACAGAGCTC 60 NA DesignRelaxed Rattus norvegicus 81 Sdhd ENSRNOG00000022980 ENSRNOT00000059169 3 1 1 62 8 55037572 55037590 GGTTCTCTTAAAGCTGGGC 59 55035315 55037546 CTTCGGAGTGACAGAGCTC 60 NA DesignRelaxed Rattus norvegicus 81 Gdap1l1 ENSRNOG00000008790 ENSRNOT00000011748 3 1 1 82 3 159838556 159838574 ACCTCATGAAACTGGACCA 59 159838619 159839492 TAGGATCTTGGCCATAAGCT 58 NA Rattus norvegicus 81 Spns1 ENSRNOG00000017621 ENSRNOT00000024185 3 1 1 80 1 197772431 197772693 TCCTGTTGTATGTGGTGATCC 60 197772371 197772389 CATCACCTAGCAAGTGGGA 59 NA Rattus norvegicus 81 Aldh1a1 ENSRNOG00000017619 ENSRNOT00000024000 1 1 1 80 1 238260927 238260948 CTGCTATATGATCTTGTCAGCC 59 238260989 238263766 CCATGTTCACCCAGTTCTC 58 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185,ENSRNOT00000085291 2 2 2 80 5 163006249 163006560 CAACAAGACAGGGTTACCA 57 163006187 163006206 AACTCATGCTCCTCAAACTG 58 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554,ENSRNOT00000024872 1 2 2 80 17 77607712 77609119 TTCTAGGCAAGAGGTCATCAG 59 77609158 77609179 AAAGCATCATAGTCAGTTTCCC 59 NA Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000074079 2 1 2 129 1 226742519 226760234 CTCCGGTAGGAGAAGATGG 59 226763722 226763740 GTTCTAACTGCAGGTCCTG 58 NA InUTR Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633,ENSRNOT00000032518 1 2 2 80 11 71004189 71004210 AACGAGTTAAATGCTCTCAAGG 59 71004250 71005181 ATACTCCCGGATCATCTTCG 59 NA Rattus norvegicus 81 Mob1b ENSRNOG00000010996 ENSRNOT00000014650 1 1 1 80 14 20971982 20992496 CTTCTTGTTTGGTAGTCGCTC 59 20971922 20971942 AAGAGCTCATACTGGTGAGAC 59 NA Rattus norvegicus 81 Ttyh2 ENSRNOG00000024578 ENSRNOT00000004081 2 1 1 80 10 103239648 103240404 TGTCTCCGAGTACATGAACC 59 103240447 103240465 GAACCTCTCCCGATGAGTG 60 NA Rattus norvegicus 81 RGD1560065 ENSRNOG00000014857 ENSRNOT00000019964 2 1 1 81 2 251818097 251818115 CTTCCTCTACAACCCGCTC 60 251818159 251819021 GAATTCCTTTGGAGGCTCCT 60 NA Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000086272 1 1 2 80 20 10267455 10275082 GTTCAAAGAGCCCACACTG 59 10275124 10275144 AATGCGTTGTACTCATGATGC 60 NA Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000086272 2 1 2 80 20 10267453 10275080 GTGTTCAAAGAGCCCACAC 59 10275124 10275142 TGCGTTGTACTCATGATGC 59 NA Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000001319 1 1 2 80 12 11288332 11288353 ACATCTACAAGAAGAATGGGAG 58 11284637 11288293 AGTCAATACCTGTGATGTGTC 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398,ENSRNOT00000067913 1 4 4 80 7 124235900 124238262 GACGTTCTAAAGACCAAGGAC 59 124235840 124235859 CATGTTCTCCATGTACTGCG 59 NA Rattus norvegicus 81 Tp53inp2 ENSRNOG00000018225 ENSRNOT00000055310 2 1 1 88 3 150913945 150913963 TGAAGACTCCAACTGTCCG 59 150914012 150914463 CTGTATAGCTGTCCTGTAGGTC 60 NA Rattus norvegicus 81 Tp53inp2 ENSRNOG00000018225 ENSRNOT00000055310 3 1 1 88 3 150913944 150913962 CTGAAGACTCCAACTGTCC 58 150914013 150914462 TGTATAGCTGTCCTGTAGGT 57 NA Rattus norvegicus 81 Celsr3 ENSRNOG00000053889 ENSRNOT00000084220 1 1 1 80 8 117629298 117629398 AAGATTGTCGACTCACAATGG 59 117629439 117629458 GCATGTCATTTCCAAAGTCC 58 NA Rattus norvegicus 81 Wdr90 ENSRNOG00000020006 ENSRNOT00000027121 1 1 1 80 10 15228015 15228036 TATTCAGACACTTCAGGATGGA 59 15227855 15227974 TCAAGACCTTGTCCGTCAC 60 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000048482 1 1 5 80 14 22609382 22610058 GAATGACCTTCTTGGTCATCC 59 22610097 22610118 TGATGGATTGACTCATAGATGC 58 NA Rattus norvegicus 81 LOC100911888 ENSRNOG00000049467 ENSRNOT00000074022 1 1 1 60 4 1400335 1400356 TGTCTGAGTTCATTCTTATGGG 58 1400377 1400395 ACAAACAAGGGACACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000087323,ENSRNOT00000036483,ENSRNOT00000084058 3 4 4 80 13 79746507 79751856 AGCAGAAGAGCAGGATCAG 59 79746445 79746466 GAAACAATCTGTGTCATGTTGG 59 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 3 2 2 80 2 196511842 196511862 TATGAAGACATCCTCAGCCTC 59 196510766 196511802 CTCACAGCACCCATATTAGGA 59 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 2 1 1 76 3 11477620 11477639 GTACCACAGAGATCCATCCC 59 11477678 11479520 GATCTGTGTCAGGGTGACC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem40 ENSRNOG00000010430 ENSRNOT00000013889 2 1 1 81 4 147657139 147657782 TCTAAACCACCCAGAGACAG 59 147657077 147657096 TGAGGAGGAAGACTTGTCTC 59 NA Rattus norvegicus 81 Plagl1 ENSRNOG00000025587 ENSRNOT00000030329 3 1 1 85 1 7252686 7254751 ATAAGCTGATGAGACACATGG 58 7254798 7254816 ATCCTTCCGGTTGAAAGTC 58 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858,ENSRNOT00000067639 1 2 2 80 16 6662516 6662537 GAGACTGTCGGAATATACCAGG 60 6662162 6662476 ATAGGTCCCGTTGTTGTCTG 60 NA Rattus norvegicus 81 AABR07017841.1 ENSRNOG00000048670 ENSRNOT00000072744 3 1 1 63 15 31770000 31770018 CTTTCAGCTCCATTTGCCT 58 31770228 31770246 ATTGAAGCCTGAGTTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Ift27 ENSRNOG00000006440 ENSRNOT00000008450 2 1 1 80 7 119393636 119398563 CTTTGAGACATCTGTGAAGGA 58 119393576 119393595 CGATACAGCTGGTAGAACTG 58 NA Rattus norvegicus 81 Fam155b ENSRNOG00000038066 ENSRNOT00000057920 1 1 1 80 X 69601808 69602216 TTATCTGCACAGGATTGATCG 58 69602258 69602276 ACTCACAAGAGACCCACTG 59 NA Rattus norvegicus 81 Prame ENSRNOG00000011113 ENSRNOT00000049735 3 1 1 80 X 106085073 106085598 AGGACTGTTCTTCTAGGAGTC 58 106085013 106085031 ATTCAGGGCATGTTGTCCT 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 1 2 2 80 3 100398810 100398830 GTGATGTTCCTGGTACTTCTC 58 100398872 100418829 TCATGGATGAGCAACAAGG 58 NA Rattus norvegicus 81 Olr325 ENSRNOG00000021071 ENSRNOT00000028605 3 1 1 60 1 228546018 228546038 AATAACACTGTCATCACACCC 58 228545978 228545997 TTTCTTGGTTCCTGAGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563780 ENSRNOG00000047338 ENSRNOT00000068439 3 1 1 84 15 30161229 30161421 GATTTGCTGGGTGAGAGGA 59 30161163 30161182 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Cep57l1 ENSRNOG00000000303 ENSRNOT00000000331 1 1 1 80 20 46620293 46620312 TAAACTGGAGAAGCTGGACG 60 46619087 46620252 TTAATCTTCTCCTCCGCAGTC 60 NA Rattus norvegicus 81 RGD1564212 ENSRNOG00000042119 ENSRNOT00000060357 2 1 1 102 15 30462685 30462704 TTTCACTAGTGGTCCTGTGG 59 30462948 30462966 GAAGTCTTGGCTCCCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0685.1 ENSRNOG00000051038 ENSRNOT00000076502 3 1 1 120 X 67601141 67601273 AAGTATGGAGGTTCTTTCGG 57 67601040 67601059 ATTTATCGTCTGGTCCTTCC 57 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000066130 3 1 3 107 X 123989722 123990560 TAAAGGTACCTCCTTTGCCA 59 123988554 123988572 ATCTGTCATGGAGATGGCG 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 1 2 2 106 2 54819098 54823566 TAAAGCAGGAAGTTCCACG 58 54819010 54819028 GAGCTCTGCTATTTCTGGG 58 NA Rattus norvegicus 81 Hspb6 ENSRNOG00000020922 ENSRNOT00000028401 2 1 1 80 1 89009122 89009142 AGAGGAAATCTCTGTCAAGGT 59 89009184 89009286 AATCCATGTTCATCTGGGC 58 NA Rattus norvegicus 81 Hbe1 ENSRNOG00000029286 ENSRNOT00000043719 1 1 1 80 1 169005143 169005161 AAAGAGCCTCATCAATGGC 58 169004963 169005099 ACAACGAGAAGTCTTCCCA 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716,ENSRNOT00000091693 3 2 2 80 6 124562004 124563098 GACTTGATTCAAGGACTTCTTACAG 60 124561948 124561969 CTGAAGCCATTCATTGTACCTC 60 NA Rattus norvegicus 81 Tm6sf2 ENSRNOG00000042237 ENSRNOT00000027800 1 1 1 80 16 21094723 21095032 CCTGTGATGTGGTACAGGA 59 21094661 21094683 GGATGAGGTAAACTATGAGTGTC 59 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000050805 ENSRNOT00000039280 2 1 1 84 12 22016966 22019899 GAGACAGGGAAGGTACCTC 59 22016900 22016918 CTGGAGACTTGTGAACCAG 58 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048508 ENSRNOT00000072814 2 1 1 60 15 35942972 35942993 TTATTGATCTCTGCCATTCCAC 59 35943014 35943032 TCTGCCACAAAGTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb5 ENSRNOG00000039457 ENSRNOT00000060468 3 1 1 60 18 30881451 30881470 GGATCCAATGGTCATGTCTC 58 30881493 30881511 ACAGCGATTTAGGCTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr679 ENSRNOG00000057763 ENSRNOT00000084947 2 1 1 60 3 77911250 77911270 ACACAATTGTTTACCAGCCAC 60 77911210 77911234 CCATAGATGTCAAGATAATCACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mllt4 ENSRNOG00000023753 ENSRNOT00000032667 1 1 1 80 1 53777438 53780280 ACACTTACGAAGATGGCTC 57 53777376 53777394 CTGTCCCAACTTCAGTCAC 58 NA Rattus norvegicus 81 Tti1 ENSRNOG00000012880 ENSRNOT00000017213 1 1 1 80 3 154483073 154483091 TTTGTGCTGAGCTATCTCC 57 154480151 154483031 CTCTGAAAGAACTTCTTCAGC 57 NA Rattus norvegicus 81 LOC100911693 ENSRNOG00000030704 ENSRNOT00000042983 3 1 1 60 2 104999707 104999728 GAGTACAAGTCAGATCAGTGGA 59 104999668 104999689 CCCTATCATAACGCTTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tstd3 ENSRNOG00000028185 ENSRNOT00000030559 3 1 1 80 5 35894808 35894921 GTCAACATACCATTGGATGAGG 59 35894749 35894771 CTTCTCTTCACCATACTTCTCCT 59 NA Rattus norvegicus 81 Slc25a30 ENSRNOG00000001052 ENSRNOT00000001389 3 1 1 80 15 57822775 57826057 GCTGTATTCAGGGATTGCAC 59 57822714 57822733 TTCAAGCTTTGGTAAGTGCC 59 NA Rattus norvegicus 81 Cd302 ENSRNOG00000006623 ENSRNOT00000008987 2 1 1 88 3 46335145 46335163 CCAAGACAGGTGAATGGAG 58 46333533 46335096 CTTCTTGTCATATGGGATTGCT 59 NA Rattus norvegicus 81 Tex264 ENSRNOG00000013201 ENSRNOT00000018122 1 1 1 80 8 115364459 115376246 GATGTCTACATCAAGGAGCG 58 115364398 115364416 GCACATGAAGTGGATCTGG 59 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 2 3 3 81 12 39693763 39693781 CACCAAGGAGAGCTATGAC 57 39691573 39693720 ATTCAGACTCTCATCGAAGTC 57 NA Rattus norvegicus 81 Ints12 ENSRNOG00000011844 ENSRNOT00000016066 1 1 1 80 2 238260862 238260880 CCAGCTTTGAAGAGACCAG 58 238260923 238263163 CCACCGTCATTTGTCTACAG 59 NA Rattus norvegicus 81 RGD1560927 ENSRNOG00000040008 ENSRNOT00000061499 1 1 1 80 X 124532865 124532883 CAAGTTCGAGAACCAGGAC 58 124532335 124532824 ATAAGTGGCTTCACTTTAGCTC 59 NA Rattus norvegicus 81 RGD1560927 ENSRNOG00000040008 ENSRNOT00000061499 3 1 1 80 X 124532863 124532881 AGTTCGAGAACCAGGACAC 59 124532333 124532822 TCATAAGTGGCTTCACTTTAGC 59 NA Rattus norvegicus 81 Asphd1 ENSRNOG00000027213 ENSRNOT00000055016 2 1 1 86 1 198381380 198381398 TTTCCGTTCTACTGCCTGG 60 198379972 198381331 GGATCTTCAGACCCAGATGG 60 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 2 2 2 81 7 11280563 11280582 TTTCAAGACCTATGCACCTG 58 11279519 11280522 GAGTGAGTACAAGTAATCGTCC 58 NA Rattus norvegicus 81 LOC500702 ENSRNOG00000030420 ENSRNOT00000046625 2 1 1 98 6 116235641 116235665 TGGTATTGTCTAGCATCTATAGGAG 59 116234214 116235585 CTGCATCATCAGTCTCAGC 58 NA Rattus norvegicus 81 AABR07052431.1 ENSRNOG00000038559 ENSRNOT00000058819 3 1 1 60 3 53316197 53316216 ATGCTTTCAACACTTGACCC 59 53316239 53316257 CCTCTTCCTTTGTGCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000088955 2 1 2 81 1 82171746 82171766 CTTCAGTCAAAGGCAAGGAG 59 82171810 82171828 CCCAACACAGGGAGATCTG 60 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 3 2 2 88 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078153 84078171 AGGAGAATGCCTTGTCCAG 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855,ENSRNOT00000056483 3 2 3 80 8 111759993 111760016 CAAAGATGGACATTGGTCTATACC 59 111759117 111759955 GGGAGTCTTCTGAACCTCTC 59 NA Rattus norvegicus 81 Mir872 ENSRNOG00000041219 ENSRNOT00000062972 2 1 1 62 5 113657740 113657762 GTTACTTGTTAGTTCAGGACCTC 59 113657784 113657802 CAGTTAGGAGGCTACTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng2 ENSRNOG00000006226 ENSRNOT00000008414 3 1 1 88 7 119351850 119351869 CAGTGAGAATGAAACCAGCA 59 119246326 119351800 CTTTGAAGTTCCCTTCGAGG 59 NA Rattus norvegicus 81 Clcn7 ENSRNOG00000016976 ENSRNOT00000023615 2 1 1 80 10 14502229 14502501 CTCCCTCAAGTATGAGAGCC 59 14502542 14502562 GTGTGGTTGATTCGTCTTTCC 60 NA Rattus norvegicus 81 LOC100910540 ENSRNOG00000001387 ENSRNOT00000001871 2 1 1 139 12 21983922 21985024 TCGTCACGGGTAACTATGTC 59 21985126 21985144 GCGGAACATTCTCTTCAGC 59 NA Rattus norvegicus 81 Olr639 ENSRNOG00000052168 ENSRNOT00000087552 2 1 1 60 3 76890992 76891012 GGACATTTGCTATACCTCCTG 58 76891032 76891052 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdf ENSRNOG00000022303 ENSRNOT00000036634 2 1 1 82 19 39245361 39246017 CAGATCTCAGGACTGGACC 59 39245297 39245316 ATCTCATGCTGGATGATTCG 58 NA Rattus norvegicus 81 AABR07072266.1 ENSRNOG00000029216 ENSRNOT00000052250 3 1 1 95 11 87768819 87769647 CTGATTGGAGCAAACTTGCA 60 87768743 87768761 GAGTGGAGTGAGTCCTGTG 59 NA Rattus norvegicus 81 Apol2 ENSRNOG00000048451 ENSRNOT00000074293 2 1 1 84 7 118729484 118732293 TGAGTTGTCCAGAGCTGAC 59 118729418 118729437 CCTGTTCTGGTCTTCCTCAG 60 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000026685 2 1 3 97 4 158637987 158705711 CAGGATAATGATGAGATCTTACAGG 59 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA InUTR Rattus norvegicus 81 Pla2g12b ENSRNOG00000046619 ENSRNOT00000074524 3 1 1 80 20 28989796 28998170 GTCGATATGGAAAGGCACC 58 28998213 28998232 TACCCAGGAAATAGGAACCA 58 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392 3 1 3 84 12 22473604 22473623 ATACGTGAGCCTGAACCTG 60 22473537 22473556 GGAGAAACGATTCCAGAAGC 59 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392,ENSRNOT00000075504,ENSRNOT00000086915 3 3 3 78 12 22476003 22476021 GGCCCTCATCAATACTGGA 59 22475579 22475597 CAGAAAGTAGGAGCCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912609 ENSRNOG00000050031 ENSRNOT00000073808 1 1 1 60 4 170194796 170194817 GCTTCGGGATATTAAGGAAAGG 59 170194757 170194776 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 2 1 1 61 17 70041963 70045333 AAGGGCTGGGAAGAATCAG 59 70041920 70041940 AGGAAATGCCTTGATTGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 H2afj ENSRNOG00000045819 ENSRNOT00000073287 3 1 1 75 4 170149241 170149259 GAGGGACAACAAGAAGACG 58 170149298 170149316 CTTGTTGAGCTCTTCGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 2 2 2 80 3 5472620 5473079 TTCTGATGAGGAACCTGGC 59 5472558 5472578 CAAACATGCTCTTCCCTTCTG 60 NA Rattus norvegicus 81 Lmod2 ENSRNOG00000045831 ENSRNOT00000073466 1 1 1 121 4 51553842 51558886 GAATGTGGAAAGCTTGCAG 58 51558971 51558989 TCCTCTGTAGACTCCTCCT 58 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000003817 1 1 3 80 13 82563778 82563797 TACAGACTCTGCTCACTCTG 59 82563838 82564669 TCGCATAAATCAGGAACTGAG 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962,ENSRNOT00000070848,ENSRNOT00000067689,ENSRNOT00000073853,ENSRNOT00000060253,ENSRNOT00000060250 2 6 10 81 15 32855316 32855334 ATCCTCCTGCTGAAAGTGG 59 32855377 32855974 GAGTCACGCTCTTTCAATCTC 59 NA InUTR Rattus norvegicus 81 Zbtb16 ENSRNOG00000029980 ENSRNOT00000045356 3 1 1 84 8 52988478 52993736 TCGCTCACATACAGGTGAC 60 52988412 52988430 CTTGTGGCTCTTGAGTGTG 59 NA Rattus norvegicus 81 Fuca2 ENSRNOG00000015551 ENSRNOT00000020946 1 1 1 80 1 7672049 7672068 TTTCTGAAATGGCCCATCTC 58 7672108 7673401 CAGTAGTTCTACCTCTGTTTCC 58 NA Rattus norvegicus 81 Olr1248 ENSRNOG00000050945 ENSRNOT00000075645 3 1 1 60 4 1626524 1626543 TATGTACCTAAAGCCCTCCT 57 1626564 1626584 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd9 ENSRNOG00000019556 ENSRNOT00000026633 3 1 1 80 4 157978161 157978179 CATCGATGAGGTCTTCCAC 58 157977621 157978118 ATACCGAAGATCATCACCAC 57 NA Rattus norvegicus 81 Cldn15 ENSRNOG00000001419 ENSRNOT00000001923 2 1 1 80 12 22739766 22739786 GGTTGCTATCTCATGGTATGC 59 22739619 22739725 CCCAGTTCATACTTGGTTCC 58 NA Rattus norvegicus 81 Cldn15 ENSRNOG00000001419 ENSRNOT00000001923 3 1 1 80 12 22739764 22739783 TGCTATCTCATGGTATGCTG 57 22739616 22739721 GAGCCCAGTTCATACTTGG 58 NA Rattus norvegicus 81 Sart3 ENSRNOG00000000702 ENSRNOT00000000891 2 1 1 80 12 48637535 48638656 TGAAGGACTACATCTGTCCG 59 48638699 48638717 CTAGGCCACCTTTCTGACC 60 NA Rattus norvegicus 81 Il6r ENSRNOG00000020811 ENSRNOT00000028234 2 1 1 83 2 189227061 189227084 ATGGTCAAAGAACGGTGTG 58 189226514 189226532 CCACATGCTTTACTCCTCG 58 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848,ENSRNOT00000049681 1 2 2 80 1 140792054 140792075 CACTTTACTCTTGGTCTTTGTG 58 140792116 140794442 AGTGAGTTGTCATGGTCTG 57 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 2 3 3 80 18 65388812 65388833 TCCCAGTACTACCCATATTCCA 60 65388873 65389351 TTTCTTTGTCTGCACCTCCA 60 NA Rattus norvegicus 81 Bin2 ENSRNOG00000031930 ENSRNOT00000048262 3 1 1 81 7 142282353 142284563 TTATAACAGTCGTATTGGCTGC 59 142282293 142282313 GCTCATCTCCCTGTAGAAGAC 60 NA Rattus norvegicus 81 Ppp1r14c ENSRNOG00000016368 ENSRNOT00000022046 2 1 1 146 1 39812175 39812193 GGAAGAATGGATCGTGGAG 58 39878289 39880392 CAGTCTACAAGAGCTTCCTG 58 NA Rattus norvegicus 81 Nxf7 ENSRNOG00000023256 ENSRNOT00000033752 2 1 1 80 X 106054283 106054303 CTCCTGAGCATTTACCATGAG 59 106054089 106054242 CATGCTACTCAGATCTGGAC 58 NA Rattus norvegicus 81 AABR07051260.1 ENSRNOG00000026208 ENSRNOT00000035050 2 1 1 80 3 4285470 4285997 AAGACAGGAATGTCTCAGGG 59 4286036 4286058 CTTCCATTGAGATTAACTCTGGG 59 NA Rattus norvegicus 81 RGD1560088 ENSRNOG00000032733 ENSRNOT00000047207 1 1 1 60 1 90729473 90729493 GTTGGACCTATGCAAGATCAG 59 90729515 90729533 GAGTTCTTGGGAGTGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 3 2 2 80 1 197883671 197883691 CTATTACTGATGTCCGCACAG 59 197883409 197883630 AAGGGCCTTCTACCTTAACC 59 NA Rattus norvegicus 81 Olr445 ENSRNOG00000049448 ENSRNOT00000072510 3 1 1 60 3 72997814 72997833 AAGAATGAGACCACAGTGAG 57 72997855 72997874 TCTGATGGAGATGATTCGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam72a ENSRNOG00000042747 ENSRNOT00000068223 2 1 1 80 13 48288154 48288172 GGGAATGAAGGCTGTTCTG 59 48288215 48290262 AAATCCACTGTGTTGGTAGG 58 NA Rattus norvegicus 81 RGD1565617 ENSRNOG00000038254 ENSRNOT00000048879 2 1 1 60 19 3326307 3326325 CAACAGAAACCAGGACAGC 59 3326349 3326367 CAGACTCTAGGTTGGATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic2 ENSRNOG00000054879 ENSRNOT00000089455 1 1 1 81 15 108911526 108911545 AGATAAGCCCTATCTCTGCA 58 108911589 108911774 CTCATGGACCTTCATGTGC 59 NA Rattus norvegicus 81 Myl6b ENSRNOG00000028837 ENSRNOT00000048453 3 1 1 91 7 2909919 2910265 GTTCTTACCACTCTCGGAGAG 60 2909848 2909866 TCATAGTTGATGCAGCCGT 60 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715,ENSRNOT00000021976 2 2 2 80 1 78746087 78746107 AATCTAAAGACGGACCTGGTG 60 78746144 78746564 CAGTTTATGATATTTGGCCCTCTC 60 NA Rattus norvegicus 81 Gnptab ENSRNOG00000005228 ENSRNOT00000006946 3 1 1 80 7 28987604 28987622 GCACATGGAGGAAGAACAG 59 28988196 28989919 TGCCTCTCACTCTTCTTCG 59 NA Rattus norvegicus 81 Aatk ENSRNOG00000004392 ENSRNOT00000005839 3 1 1 80 10 109193195 109193520 CTGTCTGATCGATGGTACGA 59 109193134 109193152 CAGATGAACCTCCTCAGCC 60 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 2 2 2 245 X 111122744 111130319 TCGAGAAAGAACAGCTCCG 60 111130528 111130546 AAAGGCCTAGGATGTAGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Elk1 ENSRNOG00000010171 ENSRNOT00000013522 1 1 1 106 X 1301768 1302315 CCCTGCAGGTTATCTTAACC 58 1302384 1302402 CTCCACTTTGACTTCTGGG 58 NA Rattus norvegicus 81 Elk1 ENSRNOG00000010171 ENSRNOT00000013522 3 1 1 108 X 1301768 1302315 CCCTGCAGGTTATCTTAACC 58 1302386 1302404 CCCTCCACTTTGACTTCTG 58 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000068237 1 1 2 96 10 87564191 87564251 AGACTACCTGCTCTTGCAG 59 87564113 87564131 GAAATGCAACAGCTGGGAC 60 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000068237 2 1 2 97 10 87564192 87564252 CAGACTACCTGCTCTTGCA 59 87564113 87564131 GAAATGCAACAGCTGGGAC 60 NA Rattus norvegicus 81 Wwp2 ENSRNOG00000012937 ENSRNOT00000018837 3 1 1 80 19 39611524 39611542 CAAGAGACCAACTCTCAGG 57 39611584 39611880 AGGTTGTTCTCTTTGATCCAG 58 NA Rattus norvegicus 81 Slc39a3 ENSRNOG00000045524 ENSRNOT00000073221 2 1 1 74 7 11548373 11548391 TTTAATGCACTGCTGCCTG 59 11550198 11550216 GTAGTCAGTGCTGATGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Sstr3 ENSRNOG00000007332 ENSRNOT00000009612 3 1 1 114 7 119767367 119767385 AAGAGATGCAAGCTACCCA 59 119764138 119767289 ACTAGCCCAAACCTTACGG 59 NA InUTR Rattus norvegicus 81 Sufu ENSRNOG00000019807 ENSRNOT00000026987 3 1 1 80 1 266144158 266147944 CGTCAAGTACTGGTTGGGT 60 266147988 266148006 ATGTTGGCAGAAGGACTCC 60 NA Rattus norvegicus 81 Olr947 ENSRNOG00000046083 ENSRNOT00000010865 2 1 1 94 7 8452325 8452343 CTCCTGTGACTACTTCCCT 58 8452400 8452420 ACAACAGAGTGACAAATGCA 58 NA Rattus norvegicus 81 Hs3st3b1 ENSRNOG00000003384 ENSRNOT00000004546 2 1 1 61 10 50401694 50401712 TACCACAAAGGTCTTGCCT 59 50369775 50369793 GTGATCTGTCCCTCAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Pole2 ENSRNOG00000004242 ENSRNOT00000005835 2 1 1 80 6 91517255 91517273 TCTGTCACTGAATTGGAGC 58 91514199 91517211 CATGTTTGATGACAAGGGC 57 NA Rattus norvegicus 81 Adamtsl2 ENSRNOG00000027742 ENSRNOT00000036995 3 1 1 80 3 5629928 5632544 ATCATCTTGGTTACTCCTTGGT 59 5632585 5632603 CTGCCGACTTCTTCCTCTC 60 NA Rattus norvegicus 81 Plekhf1 ENSRNOG00000027724 ENSRNOT00000020383 3 1 1 60 1 94610494 94610513 AAGAAGTCCTTCGTGGTCTC 60 94610453 94610472 TGTGGCTTATCCATTCCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps27a-ps1 ENSRNOG00000034246 ENSRNOT00000049535 3 1 1 60 5 138628598 138628616 TGATGAATGTGGTGCTGGA 59 138628556 138628574 CTTGCCACAGTAATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd42 ENSRNOG00000009664 ENSRNOT00000068402 1 1 1 80 1 157422354 157425563 TGGAGTCTAAGAAGACCATCAC 59 157422295 157422316 GTTGACACTCTAACTTCTCCCT 60 NA Rattus norvegicus 81 LOC688389 ENSRNOG00000028582 ENSRNOT00000059424 2 1 1 81 2 88744819 88746115 CTTATAAGGTGTGCTTGCCA 58 88744757 88744777 GGAGACTGAATTATTGGTGCC 59 NA Rattus norvegicus 81 Olr1590 ENSRNOG00000030059 ENSRNOT00000045217 1 1 1 118 13 92177745 92177763 AATGTTTGCTGTCCTTGCC 59 92177850 92177868 TCAGTGACCAGAGACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017662.2 ENSRNOG00000047078 ENSRNOT00000066990 2 1 1 83 15 29856712 29856903 GATTTGCTGGGTGAGAGGA 59 29856647 29856666 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004,ENSRNOT00000063875 3 2 2 80 20 30820361 30820381 GAAGAGATGGACAGCTATGAG 58 30819908 30820319 AGTGAACTGGATTCCTCCT 58 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163,ENSRNOT00000065644 1 2 2 80 15 3965813 3965833 AGATGTTGACCATAAACCCTG 58 3965875 3969638 CTGTTGACCGTTGACAGAC 59 NA Rattus norvegicus 81 Dcc ENSRNOG00000033099 ENSRNOT00000064947 2 1 1 80 18 66636430 66640557 CCAAGTACAAGTCAGAAGACAC 59 66636371 66636395 CTGAGAACTCATACATGGTATTTGG 60 NA Rattus norvegicus 81 AABR07017838.1 ENSRNOG00000048203 ENSRNOT00000072127 1 1 1 95 15 31719899 31720035 CTCCTCATCCTCACAAGGG 59 31720088 31720112 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Trim3 ENSRNOG00000018356 ENSRNOT00000024850 3 1 1 80 1 170456565 170456583 TATGCAGTATCTGCCTGGA 58 170450970 170456521 TCTGGAGACATCTTTCGCA 59 NA Rattus norvegicus 81 Agps ENSRNOG00000001547 ENSRNOT00000002111 1 1 1 80 3 62675247 62681503 GATACTTCACAAATGAACCGGA 59 62681544 62681562 TTGTCCTGTTATCCCAGCC 59 NA Rattus norvegicus 81 Uxt ENSRNOG00000009893 ENSRNOT00000013476 3 1 1 80 X 1277372 1277392 ATCGAGACAAGGTATATGAGC 57 1277432 1277589 AGTGATTAGTTTCCTGGAGTC 57 NA Rattus norvegicus 81 LOC100359930 ENSRNOG00000028852 ENSRNOT00000049588 2 1 1 84 1 82653588 82653606 CAGCTAGGCTTCAAACCAC 59 82653434 82653540 AGATGGCTACCAAGTCCTC 59 NA Rattus norvegicus 81 4933416C03Rik ENSRNOG00000022632 ENSRNOT00000032374 3 1 1 60 7 59138951 59138971 AAGCTGATTCATTCCAAGGAG 58 59138911 59138929 TCTGTCTTTGTGCTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l2 ENSRNOG00000033929 ENSRNOT00000045639 2 1 1 90 11 67396004 67398083 ACTTCATTAAGATGGATGTGGG 58 67395935 67395956 CCACTAAGTTCCAAATCATCCT 58 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033,ENSRNOT00000078532 1 2 2 80 17 67901549 67904588 GGAATATTGGCAACAGACCT 58 67901488 67901507 TTTATCTCAGAGGCTGACAC 57 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000089233 1 1 8 80 3 100771186 100815562 CTTCATTGAGCCCAGTTCC 59 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 Tead4 ENSRNOG00000005608 ENSRNOT00000050834 2 1 1 80 4 161546368 161558073 CTTGTGAAGTTCTGGGCAG 59 161546306 161546325 CTCATACTGGCTGGAGACTC 59 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 3 2 2 89 8 71728148 71728166 AGTAGAGGTGCTGTACAGC 59 71727705 71728095 TACCGTTTCTTGATCCGCT 59 NA Rattus norvegicus 81 Tnfaip3 ENSRNOG00000049517 ENSRNOT00000074583 3 1 1 81 1 14405589 14405926 GCTGCCAAGTTAGATGAAGC 60 14405527 14405546 TGTATTCGTGCTGAACAAGC 59 NA Rattus norvegicus 81 Leprot ENSRNOG00000050849 ENSRNOT00000007859 2 1 1 83 5 120503456 120503474 TTGTGGCACTCTCCTTCAG 60 120503521 120507128 GCCAGTAAACGCCATAGTC 59 NA Rattus norvegicus 81 A4galt ENSRNOG00000009736 ENSRNOT00000012914 3 1 1 122 7 124087449 124089371 GACAAGTCAATCCTTATGGGC 59 124087347 124087366 AATGAAGAGGGTGAAGACCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atraid ENSRNOG00000006326 ENSRNOT00000066743 1 1 1 80 6 26682348 26682553 ACTGCTGTCATCATAGACCT 58 26682287 26682305 CTGCAGCTGAGTAAATCCA 58 NA Rattus norvegicus 81 RGD1563581 ENSRNOG00000040101 ENSRNOT00000047043 2 1 1 60 17 2165945 2165963 ATGGAGTCCCTGATTGCTG 60 2165985 2166005 ATTGACAGCTATTTCCGTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crtc2 ENSRNOG00000056337 ENSRNOT00000092144 2 1 1 80 2 189622236 189622255 TCACACTATGACCCATTTGG 58 189622298 189622668 AGAGGTGAGTGAAGTCCTG 58 NA Rattus norvegicus 81 Olr461 ENSRNOG00000051828 ENSRNOT00000079401 3 1 1 60 3 73204593 73204611 ATCCTGATAGAACCTCGCC 59 73204633 73204653 GAAAGGACAAGTTAGTGAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2d1 ENSRNOG00000000611 ENSRNOT00000000750 1 1 1 80 20 18572212 18572317 TGGGAGATGACTTGTTCCA 58 18574756 18574774 TGAGGAAGAAGACTCCACC 58 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000077172 1 2 4 82 7 117719251 117719269 GTCTCTACTCGGTGCTGTG 60 117712136 117719210 CATCAAGTGACCATTAGTACACTG 60 NA Rattus norvegicus 81 LOC56764 ENSRNOG00000016432 ENSRNOT00000021984 2 1 1 80 2 252505222 252505242 GTAGAGAACATTCAAGGACCA 58 252501287 252505181 CATCAATTTCCAACCACGTG 58 NA Rattus norvegicus 81 Tceal7 ENSRNOG00000037645 ENSRNOT00000046091 2 1 1 167 X 106775022 106775867 AAGAGAAGGAATCTGTGTTCAC 58 106776285 106776303 CCATAGGGATGTTCCTCCT 58 NA InUTR Rattus norvegicus 81 Psmd8 ENSRNOG00000037580 ENSRNOT00000027937 2 1 1 80 1 88119351 88120128 TCGAGCAATACCTCATGGA 58 88119289 88119308 AGAAGGTATAGCTCTCAGCG 59 NA Rattus norvegicus 81 Mir107 ENSRNOG00000035639 ENSRNOT00000053762 3 1 1 60 1 253128304 253128323 AAGCTTCTTTACAGTGTTGC 57 253128263 253128281 TGATAGCCCTGTACAATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000082342 1 1 12 60 20 3363844 3363862 GGTATTTCCACAGGCAACC 59 3363885 3363904 CTCACCTATCCTCTGCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Katnal2 ENSRNOG00000017788 ENSRNOT00000048702 2 1 1 80 18 73310046 73310067 CCTTCTTTAACATTTCTGCGTC 58 73305400 73310005 GTTCAAATAGCACCCGGAC 59 NA Rattus norvegicus 81 Actg1 ENSRNOG00000036701 ENSRNOT00000054976 1 1 1 84 10 109519264 109519393 GAAGATTAAGATCATTGCTCCTCC 60 109519203 109519221 CTGGAAGGTGGACAGTGAG 60 NA Rattus norvegicus 81 Hk1 ENSRNOG00000046891 ENSRNOT00000072429 1 1 1 80 20 31941081 31941099 AGGACAAGAAGTTACCCGT 58 31938187 31941037 ACGTGATCAGTACAGCCTC 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365,ENSRNOT00000086473 2 2 2 80 4 83825475 83825493 GGAAGGTCTGGGTGATGTC 60 83825535 83832837 TGGACACTTCATTCTGAAGCT 60 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 3 2 2 101 7 121151327 121151345 GTGAAGTGGAAAGGATGGC 59 121141741 121144277 TTTCTCCTCCTTCTCCTCG 58 NA Rattus norvegicus 81 Nkain1 ENSRNOG00000011445 ENSRNOT00000056229 2 1 1 80 5 148661193 148662659 CGGTATCTCATCCTGTATGCA 60 148662701 148662719 AACCTCCAGGTAGAAGCAG 59 NA Rattus norvegicus 81 LOC680964 ENSRNOG00000047566 ENSRNOT00000071058 2 1 1 60 4 36755740 36755759 ATTAAAGGGAAGAGTGGAGC 57 36755699 36755717 CTGTAGTTTGCTGGTCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Comtd1 ENSRNOG00000013968 ENSRNOT00000018897 2 1 1 80 15 2632588 2632750 GACTTTGGATGAGCTCCTG 58 2632793 2632812 GTACAGTTCTCCTTGTCTGC 58 NA Rattus norvegicus 81 Phf21b ENSRNOG00000013067 ENSRNOT00000017906 2 1 1 80 7 125710359 125711613 AGAACATCTAGAAGAGATCCAGAG 59 125711652 125711670 AAGAAGCCGCTATAGGCAG 60 NA Rattus norvegicus 81 LOC100361388 ENSRNOG00000030601 ENSRNOT00000042040 3 1 1 89 3 132282780 132282799 GTTGTCTGCTAAACCTGCTG 60 132282710 132282728 TTACCGACATCGACCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.1 ENSRNOG00000045549 ENSRNOT00000075092 1 1 1 91 15 31456307 31456473 CTAATGCTCAGGAGGAGCA 59 31456528 31456546 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 AABR07017825.1 ENSRNOG00000045549 ENSRNOT00000075092 3 1 1 94 15 31456304 31456471 CTCCTAATGCTCAGGAGGAG 59 31456528 31456546 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 H1foo ENSRNOG00000025251 ENSRNOT00000042673 3 1 1 80 4 147847385 147848092 GCAGCTTCAAGCTAGTTCC 59 147848136 147848154 CCTTGGTACCTGTAGCTCC 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451,ENSRNOT00000041418,ENSRNOT00000056457 3 3 3 83 9 111078785 111078805 GAACCTGTACAGATAAAGCCA 58 111078850 111080130 TGAATCCAACACCTTTCGG 58 NA Rattus norvegicus 81 Rpl34-ps1 ENSRNOG00000038045 ENSRNOT00000057895 3 1 1 60 17 78876221 78876239 GCAACAGGATCGTTTACCT 58 78876263 78876281 CCACATGCGGATTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo7 ENSRNOG00000010427 ENSRNOT00000014002 2 1 1 80 1 174684999 174686108 ACACAACATCTGGCAATGAC 59 174686151 174686169 AGTGACTGCTTTGTCATCG 58 NA Rattus norvegicus 81 LOC100912042 ENSRNOG00000047187 ENSRNOT00000075095 3 1 1 80 3 4875564 4876038 CGTAAACTCAGGAAGAAGGAG 58 4876080 4876098 GGAACTGAAGTTCTTGGGC 59 NA Rattus norvegicus 81 Retsat ENSRNOG00000014090 ENSRNOT00000019571 3 1 1 81 4 100469552 100469570 GCTGAAGTCCTGAAACAGC 59 100469615 100470431 GGGTTACTCCGTAAGTGGG 60 NA Rattus norvegicus 81 Tfb1m ENSRNOG00000056223 ENSRNOT00000078768 2 1 1 80 1 44462389 44462407 TCATGGAGATGTGCTGACG 60 44460597 44462347 TTTGGAGGATCATCTTCCCAC 60 NA Rattus norvegicus 81 RGD1309783 ENSRNOG00000004809 ENSRNOT00000006507 1 1 1 82 3 102428801 102428981 ACACCTCTGATGAAGGCTG 59 102428737 102428755 ATACGGTTTGGATCAGCCC 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 3 2 2 80 2 189400870 189400888 TGGCGTCAAGTAGTAACTG 57 189400931 189401323 ACAGCAATACGAATACCAGG 58 NA Rattus norvegicus 81 Olr578 ENSRNOG00000050566 ENSRNOT00000042725 3 1 1 60 3 75752479 75752500 TGGATAAAGGAAATTGCTCCTC 59 75752440 75752459 GGGTCATTAGTGATTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adora3 ENSRNOG00000015788 ENSRNOT00000021236 3 1 1 80 2 208531472 208531490 TTCCATCATGTCCTTGCTG 58 208531530 208533432 GTGGTAACCGTTCTATATCTGAC 59 NA Rattus norvegicus 81 LOC684539 ENSRNOG00000049125 ENSRNOT00000072178 1 1 1 60 3 73064797 73064817 AGAGCTTTCTCTACATGTGGG 60 73064837 73064857 GTAAAGCACCATAGAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 3 2 2 80 3 114356015 114356033 ACACTGGAGGAAGTGACAC 59 114356077 114362046 GGGCTGAAGAATCCTCCTC 60 NA Rattus norvegicus 81 AABR07001348.1 ENSRNOG00000023081 ENSRNOT00000031519 2 1 1 80 1 39708851 39709537 AGGAAATGCCAAGATCAACAG 59 39708791 39708812 TATTCCCTGTAGGTGGAATCTG 59 NA Rattus norvegicus 81 Rn60_2_2278.1 ENSRNOG00000046624 ENSRNOT00000074344 2 1 1 60 2 208356993 208357011 CAGAGATGATGACGTTCCC 58 208356951 208356971 CCTTTAAAGTCCCGAACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 3 3 3 80 20 3731250 3731430 GAGTCTATGAAAGGCTCCCT 59 3731189 3731207 AATAGCGTCGTCTCTGGAG 59 NA Rattus norvegicus 81 Trim52 ENSRNOG00000024509 ENSRNOT00000020876 1 1 1 102 15 90364640 90364734 ATTTCCAGGCTCCAGTCAG 59 90365524 90365542 AAGTGACTGCATAGGGCTG 60 NA InUTR Rattus norvegicus 81 Clca4 ENSRNOG00000029889 ENSRNOT00000017943 3 1 1 80 2 250844130 250845126 TAGTGGATGGAGAAATTCAAGG 58 250844071 250844089 TGCTGAAATTCTCCAGGAC 58 NA Rattus norvegicus 81 RGD1564095 ENSRNOG00000040219 ENSRNOT00000061899 2 1 1 60 5 12407035 12407053 CTTTCCTGGTGCCAAAGAC 59 12407077 12407095 ATTGTCCTTCTCGATGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink2 ENSRNOG00000047065 ENSRNOT00000075226 3 1 1 83 14 33249358 33251599 TTCAGAACACCAGACTGTC 57 33251646 33251664 AGTGTTCATATCCGTTCCG 57 NA Rattus norvegicus 81 LOC100362366 ENSRNOG00000028690 ENSRNOT00000037043 2 1 1 60 3 24600735 24600757 ATCATTGAGGTAGATCCTGACAC 60 24600697 24600715 AGAGACTGCCAAAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001888.1 ENSRNOG00000060716 ENSRNOT00000071177 1 1 1 81 1 61220189 61220207 CCTTTCTCCTCATGAGCCA 59 61220246 61220273 CTAGAGTCTTTGTGAAACCTATTCC 59 NA Rattus norvegicus 81 Oaz1 ENSRNOG00000019459 ENSRNOT00000026341 1 1 1 154 7 11752947 11753043 CATCCTGTACTCCGACGAG 59 11752811 11752829 CTGGGAGCTCGATGTAGAG 59 NA Rattus norvegicus 81 Slc23a3 ENSRNOG00000018266 ENSRNOT00000024667 3 1 1 81 9 82328645 82328987 ACTATATCTGGTACACGGATTGAG 60 82328587 82328606 GAAGCATTTGCGTTTCTTGG 59 NA Rattus norvegicus 81 Atp6v1b2 ENSRNOG00000011891 ENSRNOT00000015931 1 1 1 80 16 22331109 22331803 GCACAACAGACAGATTTACC 57 22331048 22331068 ATTCCTTCTCCAATAGCTGAC 58 NA Rattus norvegicus 81 Qpctl ENSRNOG00000015413 ENSRNOT00000021200 2 1 1 81 1 80054451 80055719 CAATCTCCAAGTGAGAAAGTTCC 60 80054392 80054410 TGTGAATGGGTCCAGTTCC 60 NA Rattus norvegicus 81 Frs3 ENSRNOG00000014328 ENSRNOT00000019404 2 1 1 151 9 15302481 15303280 AAGTTCAAGGTGACAAATGTGG 60 15302351 15302369 TTGGAGTCGTAGCCATAGC 59 NA Rattus norvegicus 81 RGD1566359 ENSRNOG00000047934 ENSRNOT00000075725 1 1 1 60 17 9457816 9457836 TCTTGCAGATCTTGGTTATGG 58 9457776 9457796 ACTGTGCATCATAGGGTAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 1 2 2 170 1 147764529 147808268 ACCTAATTAAGTGGAAGCAGGA 59 147808397 147884080 GGACTTTAGCTGTGACTTCTG 59 NA Rattus norvegicus 81 Anks4b ENSRNOG00000046181 ENSRNOT00000075035 3 1 1 60 1 189940374 189940395 CCACTGCATCTCATTTCTAGTC 59 189940416 189940434 CAAGTCATTATCCAGGGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102,ENSRNOT00000083941 3 2 2 118 15 33722559 33722814 TTCTTTCAATTCAGGCCCTG 59 33722460 33722478 CAGGTCTCTGAGGTAAGGG 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 3 1 1 62 3 61686332 61686352 ACTTTCGAGTGGATGAAAGTG 59 61686374 61686704 TCCATATTCGGACAGTTTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Raver2 ENSRNOG00000023812 ENSRNOT00000033933 1 1 1 80 5 119962621 119964811 GTAAAGCACAGCAGAGCTC 59 119964853 119964873 GCTGTATCAAAGGTAAGGGAG 58 NA Rattus norvegicus 81 Olr1592 ENSRNOG00000003518 ENSRNOT00000004670 3 1 1 60 13 92209739 92209758 TCACTGGGTATCACAGAAGG 59 92209698 92209719 TAGCTATGTACCTGTCAATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr160 ENSRNOG00000009487 ENSRNOT00000012560 3 1 1 115 2 116106569 116143737 ACAGTTGTATTCAGAGGGCA 59 116106473 116106494 GTTCTTTGAAGGAAGAGCTGTC 60 NA InUTR Rattus norvegicus 81 Nr2c2 ENSRNOG00000010536 ENSRNOT00000014353 1 1 1 80 4 124025306 124026253 TTCTCTTTAGTCCCGATCATCC 60 124026291 124026312 GTAATTCCATCTGTGCCTTCTC 59 NA Rattus norvegicus 81 Diras1 ENSRNOG00000029738 ENSRNOT00000046078 2 1 1 60 7 11559347 11559366 TTTCGTGACACTTACATCCC 58 11559389 11559407 TGTCACAGCTGATCACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970,ENSRNOT00000085403 2 2 2 80 8 79673676 79673697 GACTCCAGAATATTCCTCACCA 59 79673738 79674087 TTTGCACTGCTTTCTCCAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 2 3 3 80 19 9770424 9770592 CTTCCTGAAGATGGCAGAC 58 9770229 9770248 AGGAAGTATTTGAAGGCCTC 57 NA Rattus norvegicus 81 Hfe2 ENSRNOG00000021200 ENSRNOT00000028781 3 1 1 80 2 198657485 198657504 GACTTCCTCTTTGTCCAAGC 59 198657543 198658077 TATGATAGTGATCTTCCGGATGG 59 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 3 2 2 80 3 11257484 11257502 GAAGCGTGTCTTCTTCCTG 59 11257546 11257697 AATCCTCCTAGCCAACCTC 59 NA Rattus norvegicus 81 Tcf20 ENSRNOG00000009585 ENSRNOT00000012699 3 1 1 83 7 123709392 123709411 CCAATGGAATCTACCTGGTC 58 123685149 123709346 AGTGGGAGCATTTCATCTC 57 NA Rattus norvegicus 81 Tmem81 ENSRNOG00000028752 ENSRNOT00000035335 1 1 1 80 13 49277785 49277803 GAGAGCACTGGTACAGGAC 60 49277847 49278664 TTAAACCCACAGGCTTCCT 59 NA InUTR Rattus norvegicus 81 Trim40 ENSRNOG00000000783 ENSRNOT00000029070 1 1 1 83 20 2170005 2176712 ACTACAAGGAAAGACTCAATCG 58 2176756 2176774 TCTCTTCCTGAGCCTTCAG 58 NA Rattus norvegicus 81 Fetub ENSRNOG00000001806 ENSRNOT00000048739 1 1 1 90 11 81656712 81656730 ACGTCTTAGAGACTGGCTG 59 81655075 81656659 CACTGTCCATGAACAGTCTC 58 NA Rattus norvegicus 81 Alg6 ENSRNOG00000009045 ENSRNOT00000012052 1 1 1 80 5 118418863 118432420 CTCTCAATTCTTACTCAGGTGC 59 118432459 118432479 GGGTAATTTCTTGCCAGTGTC 60 NA Rattus norvegicus 81 Sema3g ENSRNOG00000018952 ENSRNOT00000025656 1 1 1 80 16 7307481 7307664 AGAGCCTCCTACATGATCC 58 7307706 7307726 AGTACACTTTGTCATCATCCC 58 NA Rattus norvegicus 81 Tgm2 ENSRNOG00000012956 ENSRNOT00000018328 3 1 1 80 3 154600761 154604609 ATCCCTACTCTGAGAACAGC 59 154600700 154600718 TGATGAGGTTTGACTCGGT 59 NA Rattus norvegicus 81 Marf1 ENSRNOG00000056248 ENSRNOT00000091520 1 1 1 80 10 936575 936596 TTACTGAAACTTCTCAAGTCCC 58 936634 936782 TGAGAAACACCAATGATAAGCC 59 NA Rattus norvegicus 81 AABR07015081.2 ENSRNOG00000054945 ENSRNOT00000087247 3 1 1 85 14 46657954 46657972 GATCCCTACAACTCGGTGG 60 46654986 46657906 GTTGGATTGTTCACCCACAC 60 NA Rattus norvegicus 81 Baz1b ENSRNOG00000001453 ENSRNOT00000001975 3 1 1 80 12 24498541 24498559 TGTGAATGCACACCTTGGA 60 24496878 24498499 CACAGAAACCATAGGTTCTGC 59 NA Rattus norvegicus 81 AABR07052523.1 ENSRNOG00000028543 ENSRNOT00000031418 3 1 1 60 3 59408809 59408827 AACTATTGCACCTGCTCTG 58 59408850 59408869 GTCAATCTTCTCCTGCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar4 ENSRNOG00000021763 ENSRNOT00000034563 1 1 1 106 1 256786640 256786658 CTGCTGGCTTTCATATGGG 59 256786728 256796425 ATCGGAATTTCCTGGTCCC 60 NA Rattus norvegicus 81 Snrnp40 ENSRNOG00000012219 ENSRNOT00000016325 1 1 1 80 5 148594393 148599996 CAATGACATCAAGGTTTGGGA 59 148600038 148600056 AAGCCAGTTACAGAGTCGG 59 NA Rattus norvegicus 81 AABR07051611.1 ENSRNOG00000049024 ENSRNOT00000073021 3 1 1 82 3 17890008 17890391 CTTTGGATTCTGGGAACCA 57 17890436 17890455 GAGACTGATTGTCCAATGGT 58 NA Rattus norvegicus 81 Nrip3 ENSRNOG00000013290 ENSRNOT00000065288 1 1 1 80 1 174395713 174395732 AAAGCTTTGGTTGACACTGG 59 174393361 174395670 GACATGGTCCCTTAGTCCC 59 NA Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000001036 2 1 2 83 20 3176222 3176431 CCAGACTAGCTCACACTCG 60 3176478 3176496 CCAACGACAATGAACCTGG 59 NA Rattus norvegicus 81 LOC680121 ENSRNOG00000009920 ENSRNOT00000013159 3 1 1 60 11 13499955 13499975 GTCAACCATTTCATTGCTGAG 58 13499995 13500015 TCTTGTTCTCACTGATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem200b ENSRNOG00000032018 ENSRNOT00000047917 2 1 1 60 5 150080732 150080750 GGACATGTGATCATCACGG 58 150080774 150080792 CCAGAGACTTGGAGTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852,ENSRNOT00000029046 2 2 2 80 X 70372223 70373120 TCACAGTCAAGATGGTAGGC 60 70373160 70373181 TTTACTGGGAAGTAGCTTTGGA 60 NA Rattus norvegicus 81 Ms4a10 ENSRNOG00000020932 ENSRNOT00000028410 2 1 1 80 1 227020657 227020675 CCAAGGACCTCTTTCTGGA 59 227019567 227020615 GTCTTTGGATGTAGCTTGTGG 59 NA Rattus norvegicus 81 Lhx1 ENSRNOG00000002812 ENSRNOT00000003799 1 1 1 80 10 71848576 71848595 ATGTAAATGCAACCTGACCG 59 71846841 71848534 CCGAAACATCGGAAGAAGTC 59 NA Rattus norvegicus 81 AABR07051550.1 ENSRNOG00000047915 ENSRNOT00000071666 1 1 1 80 3 16817091 16817314 GGGTATCTGGTACCTGTGG 59 16817358 16817376 TAGTGACCTTGTCTCCTGC 59 NA Rattus norvegicus 81 AABR07051550.1 ENSRNOG00000047915 ENSRNOT00000071666 3 1 1 81 3 16817090 16817313 TGGGTATCTGGTACCTGTG 58 16817358 16817376 TAGTGACCTTGTCTCCTGC 59 NA Rattus norvegicus 81 Spred1 ENSRNOG00000005209 ENSRNOT00000007028 3 1 1 86 3 108851066 108854521 CCAAGTGAGCCAGATACCA 59 108854570 108854589 TCCTTAGATATCTGCCGCTG 59 NA Rattus norvegicus 81 RGD1565713 ENSRNOG00000039060 ENSRNOT00000048255 3 1 1 60 15 34584536 34584555 GTAAACACGCAAGTTAAGGG 57 34584577 34584596 TTTGCTCAATCCTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 3 2 2 80 10 37158260 37163054 CGAGTAAAGGTGAAAGAAGAATCC 60 37158203 37158225 CTCCAAGAAAGACTTCATTCAGG 60 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000088089,ENSRNOT00000008886 1 3 3 80 6 126140934 126140952 TCATGGTCACCTTCATCAC 57 126140994 126146547 ATCCAATAATAGTCACCAGCC 58 NA Rattus norvegicus 81 Lin7c ENSRNOG00000045698 ENSRNOT00000073258 3 1 1 80 3 101017447 101018090 TTAATGGAGTGAGTGTTGAAGG 58 101018130 101018149 CTAACTTCACCTTGCCTTGG 59 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000058298 ENSRNOT00000088867 1 1 1 60 4 1431464 1431483 AATGCCAATCTCATCAACCA 58 1431504 1431524 TACAAGAAAGTTGGAGGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam5 ENSRNOG00000020694 ENSRNOT00000028096 3 1 1 102 8 22054575 22054672 TCACGGTGGAATATGGTCC 59 22054737 22054756 TTCCCATCAACTTCACAGGA 59 NA Rattus norvegicus 81 Ube2u ENSRNOG00000023895 ENSRNOT00000035949 1 1 1 80 5 118624620 118624638 TCCACATTTCATGGCACAG 59 118624681 118639997 AGCACAAACTTTGATTCCCA 58 NA Rattus norvegicus 81 AC139873.4 ENSRNOG00000061643 ENSRNOT00000091724 3 1 1 60 3 73896479 73896499 GTGGTCCTTGTTTCTTACCTG 59 73896439 73896460 CTTCAGCAGAATTCATTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept1 ENSRNOG00000017804 ENSRNOT00000055012 2 1 1 80 1 198660218 198660774 TCCTCAAGCAGAAGATCCG 59 198660156 198660177 CTTCATCAGAGTCACATTCTGG 59 NA Rattus norvegicus 81 Usp18 ENSRNOG00000037198 ENSRNOT00000056174 2 1 1 80 4 153813618 153813638 AGACATGTTGCCTTAACTCCT 60 153813676 153814686 GCACTGTTATCCTCTTCAATACC 59 NA Rattus norvegicus 81 RGD1563774 ENSRNOG00000032078 ENSRNOT00000045483 2 1 1 60 5 27180549 27180567 AATCTGGTGAATCGTCTGG 57 27180507 27180525 AGGCAGGGATAAAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563774 ENSRNOG00000032078 ENSRNOT00000045483 3 1 1 60 5 27180548 27180567 AATCTGGTGAATCGTCTGGT 59 27180507 27180525 AGGCAGGGATAAAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slbp ENSRNOG00000037162 ENSRNOT00000040229 1 1 1 80 14 82361074 82361462 AAATCGTCATCAGGAAGTTCTG 59 82361500 82361521 CAAGACACTTTCATCTGTCTCC 59 NA Rattus norvegicus 81 LOC100362830 ENSRNOG00000027694 ENSRNOT00000011545 2 1 1 60 5 169021893 169021911 GGCTAGTTCGTGAATTGGA 58 169021851 169021871 CTCTGAGCAATGAAGACTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055485.1 ENSRNOG00000053774 ENSRNOT00000045977 2 1 1 80 7 4066703 4066772 TACCTGTTCTTACATCAAGCCT 59 4066644 4066664 GCAATGGAAGTAGTGAGAACC 59 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302,ENSRNOT00000077687 3 2 2 80 7 144088670 144088688 TCCAGTCATCTTTGCAGGT 59 144091544 144092676 TGCAGCTTGGTCAAATCTG 59 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778,ENSRNOT00000086250 3 2 2 80 20 21981603 21982788 TCGGTCATAAGGAATGCAC 58 21981541 21981559 TCATGTCGGTGTCAAACAC 58 NA Rattus norvegicus 81 Slc30a6 ENSRNOG00000005856 ENSRNOT00000007919 1 1 1 80 6 22208349 22208367 GTGGCCCTTTCTTTCAACC 59 22207123 22208305 CGTACTTGCAGCTTCAGAG 59 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 2 2 2 99 7 129860683 129862039 CACTGACTTTGATGGCACC 59 129862102 129862120 CAGTACACCCAGAGACCAC 59 NA Rattus norvegicus 81 Apln ENSRNOG00000003984 ENSRNOT00000005331 1 1 1 111 X 134859920 134859938 GAACTTCGAGGACTGGACC 60 134859213 134859849 CCTTCAATCCTGCTTTAGAAAGG 60 NA InUTR Rattus norvegicus 81 Snrnp200 ENSRNOG00000012157 ENSRNOT00000043895 2 1 1 80 3 119655449 119655467 CTTGGGTCTGTTTCTTCGG 59 119655510 119655874 AGTTCCAAGTTCTTGCACTG 59 NA Rattus norvegicus 81 Myeov2 ENSRNOG00000037402 ENSRNOT00000056600 3 1 1 62 9 99816010 99818201 ATGTAGACTTGGATGAGGCTG 60 99815968 99815986 TTTCATTGGCTGCCAAGTC 59 NA DesignRelaxed Rattus norvegicus 81 Rmi1 ENSRNOG00000019108 ENSRNOT00000025812 2 1 1 60 17 6659645 6659663 AGTGATGATGTGACGGTGG 60 6659603 6659621 GGGCAGTATCTGAGGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmi1 ENSRNOG00000019108 ENSRNOT00000025812 3 1 1 60 17 6659965 6659983 CTATTCCCGCTCTCCACAG 60 6659923 6659941 ATGTGCCCATGAACTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufd1l ENSRNOG00000047394 ENSRNOT00000071493 3 1 1 80 11 86305667 86310100 AAGGTTGAAGAGGATGAAGC 58 86305606 86305624 CTTTCTTCCCTTCTTCCGC 59 NA Rattus norvegicus 81 Kcna6 ENSRNOG00000052486 ENSRNOT00000080139 2 1 1 69 4 159280846 159280865 CCTAGAGGAGCAAGGAACAG 60 159254232 159254250 TTTCCAGAGTGACCACGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Uqcc1 ENSRNOG00000048309 ENSRNOT00000072679 1 1 1 80 3 151454853 151456030 CCACAACACAAGTAAGCTGTC 60 151454793 151454813 ATTATCTTCGTGAAGGGACCA 59 NA Rattus norvegicus 81 Hist1h2ba ENSRNOG00000016865 ENSRNOT00000022630 1 1 1 60 17 43423195 43423214 GGTTCAAGAAAGCAGTCACC 60 43423237 43423255 CGGCATCTCTTACGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ba ENSRNOG00000016865 ENSRNOT00000022630 3 1 1 60 17 43423213 43423231 CCAAGACCCAGAAGAAGGA 59 43423254 43423273 ATGGAGTAACTCTCCTTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681385 ENSRNOG00000043494 ENSRNOT00000067576 1 1 1 80 3 5280429 5280673 AGGAACACTTTCATGTCTGG 58 5280368 5280388 ACTATATTGACCAGGCTCCTC 59 NA Rattus norvegicus 81 AC139642.2 ENSRNOG00000021723 ENSRNOT00000032477 3 1 1 64 4 118342125 118342143 CTGAAACAGCCCAAGAAGC 60 118342079 118342097 TGTTTCTGCTTGAAAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps8 ENSRNOG00000001764 ENSRNOT00000029255 2 1 1 80 11 83286674 83286692 CCAGTGGGAAACTTCTCAG 58 83280679 83286633 GATCATCTGTGAACTTGATGTG 58 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000084057,ENSRNOT00000007602 1 2 3 138 6 131888522 131888540 ATTACTTCACCTCTGCGTG 58 131838879 131888421 CATCTTTACACTGGCATCCA 58 NA Rattus norvegicus 81 Terf2 ENSRNOG00000020435 ENSRNOT00000027695 2 1 1 80 19 39276891 39276909 GGACCAGCTGTTTGAAGTG 59 39273092 39274652 TCTTCTATGGTCCACTTCTGC 60 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 3 1 2 88 3 172433196 172433309 CCATTGAAACCATTGTGGC 58 172433366 172433385 CTCAGCAATGTAGTCCACTC 58 NA Rattus norvegicus 81 Apobec3b ENSRNOG00000016852 ENSRNOT00000037134 1 1 1 80 7 121125842 121125860 AGTCCTATCTGTGCTACCA 57 121125901 121126741 GTTCACCTTTCTTGTATAGCAG 57 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 1 2 2 80 6 132943696 132943714 TCTGGAGATTGAGCTGAGG 59 132942508 132943654 ATGTAGTTGCTCTGAATCCTG 58 NA Rattus norvegicus 81 Olr838 ENSRNOG00000050363 ENSRNOT00000051234 3 1 1 60 5 59292673 59292691 TTCTCACTCCCAGGAAGAC 58 59292631 59292652 AAAGACAGAAACATCTGCATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gjb4 ENSRNOG00000026910 ENSRNOT00000037128 2 1 1 60 5 145417801 145417820 GCTGAGTCTCATCTTCAAGG 58 145417760 145417781 AATGCAGTGGAAGATATAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565607 ENSRNOG00000043303 ENSRNOT00000023213 1 1 1 60 1 169720999 169721020 GTTCTCCTGCTAGTGTTAAACC 59 169720960 169720980 CTACCCTGTTCAACTTGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp821 ENSRNOG00000000262 ENSRNOT00000000279 2 1 1 80 19 41944493 41944514 TGGAAAGAGAATTAGACAGTGC 59 41944046 41944453 TTAGGTTCTCTGTGACCTCG 59 NA Rattus norvegicus 81 AABR07050399.1 ENSRNOG00000055770 ENSRNOT00000072167 1 1 1 60 5 163773814 163773832 TGTGTATGCTCACTTCCCT 58 163773856 163773874 GATTTCAACCAGAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nuak2 ENSRNOG00000000034 ENSRNOT00000000039 2 1 1 80 13 49101020 49101038 TGTTGCACATAAGGAGGGA 59 49101080 49103854 TCTCAAACACTTCATGGATGG 58 NA Rattus norvegicus 81 Ndfip2 ENSRNOG00000024022 ENSRNOT00000039423 1 1 1 80 15 89445323 89447129 CCTCAAAGAAACCAAGAGGA 58 89447172 89447190 GCCATCATTGCCTACTCTG 58 NA Rattus norvegicus 81 Olr3 ENSRNOG00000015254 ENSRNOT00000020448 2 1 1 60 1 70438415 70438433 CTTGTCATCATGGTTCCCT 57 70438457 70438475 CAGCAGCCAGAATCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scfd2 ENSRNOG00000026828 ENSRNOT00000038506 1 1 1 81 14 36267664 36341467 AAAGGCTTCTTCTACAGAGTC 58 36341508 36341528 CTTGAGGACTTAATCAAGGGT 57 NA Rattus norvegicus 81 Cnpy2 ENSRNOG00000003549 ENSRNOT00000004895 2 1 1 81 7 2738991 2741279 GTTGTGGAGGTTCCTTATGC 59 2741321 2741341 CATACTCCTTCATTCGGTCAC 59 NA Rattus norvegicus 81 Got2 ENSRNOG00000011782 ENSRNOT00000015956 2 1 1 83 19 9608495 9611376 GAAGCAATGGTTGCAGGAG 60 9611421 9611441 TCTTTCTTCAGGTTGGAGACC 60 NA Rattus norvegicus 81 Mir488 ENSRNOG00000036265 ENSRNOT00000054388 3 1 1 62 13 76198603 76198621 CCCAGATAATGGCACTCTC 57 76198647 76198665 TTCTGACCAAGAAACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txndc8 ENSRNOG00000029073 ENSRNOT00000042788 2 1 1 85 5 75114554 75114572 GGAAATAGGCTTGTGGTGG 59 75106922 75114506 AAAGACATTGCCTGGAAAGC 60 NA Rattus norvegicus 81 Olr1645 ENSRNOG00000039434 ENSRNOT00000060427 2 1 1 60 15 28934775 28934797 ACTCCATATCTTTCACCTCACTC 60 28934737 28934757 TCAATCTCATCAGGACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033,ENSRNOT00000005317,ENSRNOT00000081141 1 3 3 80 6 28530230 28530249 GAAATGAAGCAAGAGCTTGG 58 28530291 28531223 AGAGCAGTCAATCTTGTTGG 58 NA Rattus norvegicus 81 Zfp598 ENSRNOG00000012434 ENSRNOT00000065827 1 1 1 80 10 14044441 14044460 CAACAAACGGTCCTGTAAGC 60 14044503 14044621 GTGGGAGGGTATTTGAGGG 60 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470,ENSRNOT00000091230,ENSRNOT00000059814 2 3 3 80 14 34166628 34166844 AGATAGAGTTCCTTGTGAACCA 59 34166569 34166588 TGGAAGAAGCAAGATCTCCA 59 NA Rattus norvegicus 81 Dnai1 ENSRNOG00000013734 ENSRNOT00000067657 1 1 1 80 5 57978835 57978855 GAACCTGATACCCAAAGACTC 58 57978897 57979157 ACTGACTCCTGTGAACCTG 59 NA Rattus norvegicus 81 Olr1654 ENSRNOG00000054976 ENSRNOT00000085156 3 1 1 60 17 44852888 44852907 ACCATTTCTTCTGCGAAGTC 59 44852847 44852865 TTAGCTGTCGTATCCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab5c ENSRNOG00000018568 ENSRNOT00000030344 3 1 1 80 10 88623554 88623573 AACAGTTTGCTGTTCATGGA 58 88623059 88623512 AAGCTTCTTAGCTATCGCCA 59 NA Rattus norvegicus 81 Olr224 ENSRNOG00000029766 ENSRNOT00000047239 3 1 1 60 1 171044800 171044818 CGTTGGCTATTGTCATCCT 58 171044758 171044779 ATGTAGATGTAGGAAAGGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esco1 ENSRNOG00000014031 ENSRNOT00000033312 2 1 1 80 18 1805773 1812911 CTGTAAAGTATGTGGGCTGG 58 1805712 1805735 CTTCAGGGAGAACCATTATTATCC 59 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695,ENSRNOT00000086409 3 2 2 80 3 140082598 140085681 CGTGGATGACTTTCAGAATTACC 60 140085720 140085739 CTCACAAGGAGAGTCTTCCC 60 NA Rattus norvegicus 81 Apopt1 ENSRNOG00000011542 ENSRNOT00000015373 1 1 1 80 6 136207963 136210619 TATAACCGAGACTGGTACAAGC 60 136210660 136210678 CTTGCTCCACATCCTCTCC 60 NA Rattus norvegicus 81 Dnajc16 ENSRNOG00000012503 ENSRNOT00000017247 1 1 1 80 5 160337712 160337732 CACAATGCGGTAGTTCATGAG 60 160335876 160337671 ATTTGTGACCTTCTCCACCA 59 NA Rattus norvegicus 81 LOC100912097 ENSRNOG00000019594 ENSRNOT00000026503 2 1 1 60 1 171095335 171095357 GAAACCAGACAAGAGTAACTGAG 59 171095375 171095395 ATTTCAGTAGGCAGGGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc1 ENSRNOG00000000150 ENSRNOT00000000162 3 1 1 80 17 85064561 85064583 GCTTTCACTAACCTTACATCCAG 60 85063986 85064524 TCATAAATGGCCACCAATTGTC 60 NA Rattus norvegicus 81 Icam1 ENSRNOG00000020679 ENSRNOT00000028066 2 1 1 80 8 22043759 22044433 CGGACTTTCGATCTTCCGA 60 22044477 22044495 CAAGAACTTCTGCTGGGTG 59 NA Rattus norvegicus 81 Olr845 ENSRNOG00000059811 ENSRNOT00000085133 1 1 1 60 5 69478060 69478079 CACACCCATGTACTTCTTCC 58 69478019 69478040 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastk ENSRNOG00000011667 ENSRNOT00000064893 2 1 1 80 4 7262783 7263239 CAACAGCAAGGTGGTACAG 59 7263282 7263301 CAGGGCATAAACTGTTGCTC 60 NA Rattus norvegicus 81 Gabrg1 ENSRNOG00000002360 ENSRNOT00000003240 1 1 1 80 14 39964724 39964744 TCCTGTGGAGTCAAACTAGAG 59 39964783 39985588 CTGCTTTATCAATGCAGTTTCC 59 NA Rattus norvegicus 81 LOC691551 ENSRNOG00000028473 ENSRNOT00000039447 2 1 1 81 1 190927274 190929670 TACCTCACTGTTATCATGGTG 57 190929713 190929731 AATCTGCATCGACCATGTC 58 NA Rattus norvegicus 81 Manbal ENSRNOG00000031453 ENSRNOT00000047047 2 1 1 90 3 153491171 153502911 TGTTACCGGAGAACTTGGT 59 153502965 153502983 AGAAATCCAGGTCAGAGGC 59 NA InUTR Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504,ENSRNOT00000090695 2 2 2 63 7 144065652 144066010 GTGGAATCCTAGTGCTGGG 60 144066037 144066055 ATTGGAACCTCCTGGACAC 59 NA DesignNoJunction Rattus norvegicus 81 Grxcr1 ENSRNOG00000038891 ENSRNOT00000059439 3 1 1 88 14 41722349 41785645 AGTGTTACAGCAACCATCAG 58 41722280 41722298 TCTCAAAGGTCGTCCTCAC 59 NA Rattus norvegicus 81 Cyp4x1 ENSRNOG00000043513 ENSRNOT00000011985 1 1 1 80 5 133942370 133942390 CATTAACTTGATGACCCTGGA 58 133942233 133942329 TCATAGGTGCCGTTTATCTG 58 NA Rattus norvegicus 81 Mroh7 ENSRNOG00000058870 ENSRNOT00000089934 1 1 1 80 5 126292263 126292734 CCTCACTTCATTGATGCAAGAG 60 126292204 126292223 CATCCGGAGCTTCTTAACCA 60 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 2 2 2 150 1 222170579 222170597 TGGTTGAACCTGAGAAGCT 59 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 3 2 2 145 1 222170574 222170592 GAACCTGAGAAGCTGTACG 58 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478,ENSRNOT00000004966 1 2 2 80 10 108644749 108644767 TCTCGAGAGTACATCCGGA 59 108644811 108646156 CTTCTCCTTCTGGCTCCTG 60 NA Rattus norvegicus 81 Bace1 ENSRNOG00000016847 ENSRNOT00000022796 3 1 1 80 8 50159060 50160258 CTGCAAGGAGTACAACTATGAC 59 50160297 50160317 GCTTCAAATACTTTCTTGGGC 58 NA Rattus norvegicus 81 Ogg1 ENSRNOG00000052140 ENSRNOT00000085766 1 1 1 126 4 145284574 145284592 AACATTGCTCGCATCACTG 59 145284682 145286949 CTACTTCTGGACCAGCCAG 60 NA Rattus norvegicus 81 AC108631.1 ENSRNOG00000021066 ENSRNOT00000028600 2 1 1 60 1 228504292 228504310 CAGACCATTCACTGCTCTC 58 228504250 228504270 GGAAATAACTGTGAAGGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxr1 ENSRNOG00000029089 ENSRNOT00000049125 1 1 1 80 8 48754980 48756227 TACAACTTCACTCGAGAGCA 59 48754919 48754938 ACAGAGATTGTGACGAACTG 58 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 1 2 2 80 18 3208563 3208660 GTGATGTGAAGGGTATTGGG 58 3208703 3208721 CTGATGCAAGCTCACATCC 59 NA Rattus norvegicus 81 Slc45a3 ENSRNOG00000007591 ENSRNOT00000010242 2 1 1 80 13 48761701 48762241 ACACTATGATGAAGGCATTCG 59 48762282 48762301 ATGACCAGGGAGAAGAACAG 59 NA Rattus norvegicus 81 Gpr37l1 ENSRNOG00000006237 ENSRNOT00000008282 2 1 1 107 13 51987297 51991885 CCTTCATGGAGGTCTCCTC 59 51987208 51987226 CAATGGGTCTCACCTTTGG 59 NA Rattus norvegicus 81 Cemip ENSRNOG00000012442 ENSRNOT00000036343 3 1 1 80 1 146083871 146085122 ACTTCAACAAGGGTGACTG 58 146083809 146083829 TGTGAACATCTGAAAGGATGG 58 NA Rattus norvegicus 81 Nup133 ENSRNOG00000017919 ENSRNOT00000024182 3 1 1 80 19 56728945 56731127 CTCAGTGAGCTCTAGAGGA 57 56728883 56728902 ACTCTCACGTCATAGTTCAC 57 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 1 2 2 80 4 52162255 52164304 CTTCATCTGCGGAGAACTG 58 52164346 52164366 CTGTGGTCACATTGATTACGT 59 NA Rattus norvegicus 81 St3gal2 ENSRNOG00000017932 ENSRNOT00000024248 3 1 1 80 19 43277995 43280087 AGGACAGATCCGATTCACC 59 43277528 43277547 GCTGGGTTGTAAATCTGGAC 59 NA Rattus norvegicus 81 Tspan8 ENSRNOG00000004411 ENSRNOT00000005909 3 1 1 80 7 58831037 58831163 TTCAAATCTGAATCTAGCCGC 59 58831204 58831223 TGCCTCATTGCTTGTTTCTG 60 NA Rattus norvegicus 81 Ptma ENSRNOG00000025731 ENSRNOT00000051368 3 1 1 60 13 89873601 89873620 GGAGATGAAGATGAGGAAGC 58 89873560 89873579 CCTCATCATCCTCAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncaph ENSRNOG00000012051 ENSRNOT00000016157 1 1 1 80 3 119594939 119594958 ACTCTTCCTGCAGATTTCCT 59 119592033 119594899 CATCTTAAGCGACCTTATGTCC 59 NA Rattus norvegicus 81 Olr721 ENSRNOG00000006654 ENSRNOT00000008690 2 1 1 60 3 78725474 78725495 CATTCAGATCCTCTTCACAGTC 59 78725435 78725455 AAAGTGGTCTATGACATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan15 ENSRNOG00000046204 ENSRNOT00000075714 1 1 1 80 20 31829017 31829036 GTGGTCATGTTCATCGTCTC 59 31827690 31828977 AAACATAAACGACTGGAGAAGG 59 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 1 2 2 80 7 142326898 142326916 CTGGTACCTGCACAATGTC 59 142326487 142326855 CCGAGATTCTTGATAGCTCC 58 NA Rattus norvegicus 81 Vom1r66 ENSRNOG00000051995 ENSRNOT00000090182 1 1 1 60 4 87516631 87516655 CAGTATCTGGATCTTCTATGTTGTC 59 87516670 87516691 CTTCATCTGGTTGTTCTCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 1 1 4 73 2 118547194 118547212 TTATATGGACCAGTGGCCG 59 118547245 118584894 CACACTTAGGAATATAGGAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910138 ENSRNOG00000031710 ENSRNOT00000051031 1 1 1 82 14 33908891 33911134 AATTCAGAACACCAGACTGTC 58 33911178 33911196 GTTCATATCCGTTCCGCAC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 1 5 7 80 15 34645171 34645191 GTCCAGAAACTACAACGACTC 59 34644700 34645129 CCTGAGTCTCCCTTACCAG 59 NA Rattus norvegicus 81 Med24 ENSRNOG00000008711 ENSRNOT00000011947 3 1 1 80 10 86623324 86623343 GCTCCATTCACATCCTTGAC 59 86622886 86623283 TCAGCAGTTCCTTAATCAGGT 59 NA Rattus norvegicus 81 Nudt12 ENSRNOG00000022576 ENSRNOT00000066968 2 1 1 81 9 105691029 105691048 GACTGCTTTAATGTATGCCG 57 105690359 105690985 AGACGATCTGTCACATCCT 58 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 1 1 1 60 20 3791655 3791675 CTGTGATCATTGTAGCTGTGG 59 3791438 3791633 TTTCCACCTGTGTTTCTCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912609 ENSRNOG00000048926 ENSRNOT00000075717 1 1 1 60 4 170129096 170129117 GCTTCGGGATATTAAGGAAAGG 59 170129057 170129076 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbp2 ENSRNOG00000008667 ENSRNOT00000011461 3 1 1 60 4 169092607 169092628 CTTCCGCAAGAAGTATCATCTG 59 169092568 169092586 CCATTCTGCCTGGTAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa10 ENSRNOG00000014339 ENSRNOT00000059724 1 1 1 80 16 29674879 29698455 GGGAATATGTCCAAGGAACC 58 29698498 29698516 GGAGTGCTCCATCTATCAC 57 NA Rattus norvegicus 81 Il23r ENSRNOG00000007544 ENSRNOT00000010151 3 1 1 80 4 98286025 98286043 AACATGACTTGCACCTGGA 60 98281063 98285982 TGTCTCCAAACTCTTCACGT 59 NA Rattus norvegicus 81 Msmb ENSRNOG00000039786 ENSRNOT00000026772 1 1 1 82 16 8285764 8288033 GTCTGATGAATGTACAGATGTAGAC 59 8288072 8288091 CACAGAAACACCACTCACAG 59 NA Rattus norvegicus 81 Mcpt1 ENSRNOG00000053494 ENSRNOT00000090206 2 1 1 80 15 34610177 34610609 GATAAGATCAGCATATAAGGGAGAC 59 34610121 34610144 CGTCCATAAGATACAATACCATGG 59 NA Rattus norvegicus 81 Atp13a5 ENSRNOG00000024127 ENSRNOT00000035049 1 1 1 80 11 75025360 75030612 TGACTTGAGACAGCAATCAG 58 75030653 75030673 TCTCTTACTGTGATTGTGACC 58 NA Rattus norvegicus 81 Brpf1 ENSRNOG00000008142 ENSRNOT00000011246 1 1 1 80 4 145274785 145275121 CACCACACTGAAGATGTAGAG 58 145275161 145275181 CTTCAGCTGTTCTTCTACTGG 59 NA Rattus norvegicus 81 Ptprv ENSRNOG00000005277 ENSRNOT00000007597 3 1 1 80 13 51947071 51947089 GGTGGAAGTCATCTCTTGG 58 51946839 51947027 TTGGGTATGAGTGGGTAGG 58 NA Rattus norvegicus 81 Ntsr2 ENSRNOG00000049054 ENSRNOT00000071387 3 1 1 80 6 41921866 41923285 TGATGGATGGACTAATGAGC 57 41923327 41923346 GCTGAGCTGACATAGAAGAG 58 NA Rattus norvegicus 81 Olr448 ENSRNOG00000009526 ENSRNOT00000012629 2 1 1 60 3 73039992 73040012 TCTTCACTGGATTAACCTCCT 58 73039952 73039973 CAGAGAAATGTCAGAAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr448 ENSRNOG00000009526 ENSRNOT00000012629 3 1 1 60 3 73039991 73040012 TCTTCACTGGATTAACCTCCTC 59 73039952 73039973 CAGAGAAATGTCAGAAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028245.1 ENSRNOG00000061031 ENSRNOT00000073575 2 1 1 60 17 62263786 62263804 AGAGCCTTGACAACCTACG 59 62263825 62263846 CCAATGAAGAGGTAGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r68 ENSRNOG00000051513 ENSRNOT00000074184 1 1 1 60 4 87441681 87441699 CCATCTTGCTACTGGTGTC 58 87441721 87441741 AATGAGATGATGAAGTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem179 ENSRNOG00000013128 ENSRNOT00000060943 3 1 1 87 6 137075439 137076643 AATTGCCCAGTTTGGACTG 59 137075370 137075389 GCGGTAGTTGTGATAAACCT 58 NA Rattus norvegicus 81 Timm21 ENSRNOG00000015142 ENSRNOT00000020376 3 1 1 81 18 81807167 81807186 GACAGTAGCAAGCAAGTGTC 59 81805497 81807125 CGGCTTCTTTCACTTTCTGAG 60 NA Rattus norvegicus 81 Mknk2 ENSRNOG00000029028 ENSRNOT00000041106 2 1 1 80 7 11912666 11912768 GCAGATTTGAAGATGTCTACCAG 60 11912808 11912826 GATTGACACAGGTCTGCAC 59 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 1 2 2 80 1 257650219 257650754 ATGACAGTGATTGGAATCCTC 58 257650796 257650814 CAACAACTGGCTTTGTCTG 58 NA Rattus norvegicus 81 Cwc15 ENSRNOG00000008490 ENSRNOT00000011855 1 1 1 80 8 12996849 12998016 GATCCTCTCACAGATGAGGA 58 12998059 12998077 TAGCTCTGCAAGAAGAGCT 58 NA Rattus norvegicus 81 Fam13a ENSRNOG00000007947 ENSRNOT00000010898 3 1 1 80 4 89203343 89203365 CTACACTGGAAGGGATACTAAGG 60 89202655 89203308 TGGTCATATCCTTAATGTCCTCAG 60 NA Rattus norvegicus 81 Klrd1 ENSRNOG00000060246 ENSRNOT00000082064 1 1 1 132 4 163362365 163363751 CATGGCAGTTTCTAGGATCAC 59 163363989 163364009 AGGTGTCGATTGAATGTTCTG 59 NA InUTR Rattus norvegicus 81 Olr1292 ENSRNOG00000052895 ENSRNOT00000073166 2 1 1 60 15 36287659 36287677 GAAACCATTGCACAGTGAC 58 36287617 36287635 TGGAGTTCTGGCTTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zar1 ENSRNOG00000026150 ENSRNOT00000030610 3 1 1 80 14 37761182 37761202 TACTATCACTGCAAAGACTGC 58 37761038 37761140 GAAGTACACCTTGCTGGTG 59 NA Rattus norvegicus 81 Med13 ENSRNOG00000003679 ENSRNOT00000035280 1 1 1 80 10 73713744 73716901 GTTCCAAATAGGGCTCGTC 58 73713682 73713700 AAGTCCTAAGCACCACTCC 59 NA Rattus norvegicus 81 Taf4b ENSRNOG00000026023 ENSRNOT00000037955 1 1 1 80 18 6218230 6218252 CACAAGTACCATAACTCCAAGAC 59 6218292 6220187 GAGCTAGAATTCGGCACTG 58 NA Rattus norvegicus 81 Gzmc ENSRNOG00000045641 ENSRNOT00000075752 2 1 1 80 15 36449860 36449881 TCCAACGTTCTTACATCAAAGC 60 36449219 36449822 CAGAATCTTCCTCAAAGGAAGC 59 NA Rattus norvegicus 81 Pax5 ENSRNOG00000024729 ENSRNOT00000033373 2 1 1 80 5 60157573 60158864 CACCTCAATATGTCTACAGGCT 60 60157514 60157532 GCTGATGGAGTACGAGGAG 59 NA Rattus norvegicus 81 Tbc1d1 ENSRNOG00000002180 ENSRNOT00000029209 3 1 1 80 14 45683816 45683836 ATTAGAACTCCAGAAGCACCT 59 45679907 45683778 GGTCTCAATTTCTGAACTTCCTC 60 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 1 1 1 100 4 98728719 98731713 AGAGTCACACCACAAGAGC 60 98728637 98728655 TACCCATCCTCCAGTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ppp1r3g ENSRNOG00000016222 ENSRNOT00000021704 3 1 1 73 17 29567522 29567540 AAGGAGAGGATGCTGACAC 59 29567467 29567486 GTATTCACCTTGTTCACAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pld4 ENSRNOG00000028566 ENSRNOT00000029017 1 1 1 80 6 137330099 137330118 CCACCATGTTCGCTTATCTG 59 137330159 137330266 TGAAGACTTTCACATCCACTG 58 NA Rattus norvegicus 81 Spata2L ENSRNOG00000016167 ENSRNOT00000021968 1 1 1 80 19 56036422 56036440 TTCGAACTCCTAGAGCTGG 59 56034921 56036379 TGAGAAGGTCTTGATGGTGG 60 NA Rattus norvegicus 81 Rrp12 ENSRNOG00000048495 ENSRNOT00000073193 1 1 1 80 1 261135412 261136423 CTGCTCTGATGACAACAATGG 60 261135352 261135371 TCAGGACAAGGTTCAGTAGG 59 NA Rattus norvegicus 81 Ptchd3 ENSRNOG00000046946 ENSRNOT00000074372 2 1 1 80 10 111032518 111033361 TGGAAGACATAGAGGTGGT 57 111033404 111033423 GAGGAATCACAGTCTTGGAG 58 NA Rattus norvegicus 81 Pdyn ENSRNOG00000026036 ENSRNOT00000037576 1 1 1 92 3 122197567 122197585 TTACAGCAGACTGCCTGTC 60 122196385 122197511 ACTCCAGGGAGCAAATCAG 59 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 2 2 2 80 15 34297859 34297877 CAGCATATCCTAGAGCACC 57 34297920 34298321 AAGCAAGCTAGGTAAGTCAG 57 NA Rattus norvegicus 81 LOC102551660 ENSRNOG00000019873 ENSRNOT00000026938 1 1 1 80 1 225134004 225134022 GTGGATGATTCCAACGAGC 59 225134063 225135515 ATTTGTACTCTTGATCTCAGCC 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 1 3 3 80 X 77292714 77292734 TGAAGGATATGGGAATCACAG 57 77292170 77292674 TTGTAGTCACATATCGGAAGG 57 NA Rattus norvegicus 81 Vom1r8 ENSRNOG00000051757 ENSRNOT00000080437 2 1 1 60 1 60117808 60117829 ATTTAAGGAACATGGCAGTTGG 60 60117848 60117868 CCCAGAATACCAAGTGTACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir221 ENSRNOG00000035631 ENSRNOT00000053754 2 1 1 60 X 3684528 3684546 GTGTTTGTTAGGCAACAGC 58 3684569 3684588 GAGAAATGCTTCCAGGTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cryl1 ENSRNOG00000008989 ENSRNOT00000012093 1 1 1 80 15 37569123 37569141 GAGATCGATGGCTTTGTCC 58 37553331 37569080 CACTATTCCTTCCTCCACCA 59 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 2 2 2 86 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108086 25108105 GGTTGGCTACTTGATTGAGG 59 NA Rattus norvegicus 81 Ube2t ENSRNOG00000005038 ENSRNOT00000006747 2 1 1 80 13 51795965 51796776 TTTGCGAGCTCAAATACTAGG 59 51796814 51796836 CTTTCAGGAACGATAACTTCCAG 60 NA Rattus norvegicus 81 LOC682646 ENSRNOG00000049837 ENSRNOT00000050916 3 1 1 80 8 44499713 44501129 AGGAGAAACATTGGTTCCC 57 44499651 44499669 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Rbm8a ENSRNOG00000021215 ENSRNOT00000028807 2 1 1 107 2 198755367 198755685 GATGGTGACGAAAGCATCC 59 198755871 198755890 GTCATAATCTTCCCGCATCC 59 NA Rattus norvegicus 81 Zfp668 ENSRNOG00000016683 ENSRNOT00000022452 1 1 1 107 1 199314269 199320355 GCATGCAAAGAAGGTCTACTC 59 199314182 199314201 AAACAGGCACTTATAACGGC 59 NA InUTR Rattus norvegicus 81 Mir205 ENSRNOG00000035520 ENSRNOT00000053643 1 1 1 60 13 112233346 112233364 CTCCTGTCCTTCATTCCAC 58 112233304 112233324 GCTTCACTCCACTGAAATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase6 ENSRNOG00000025597 ENSRNOT00000033739 2 1 1 60 15 28081325 28081345 CACATATGGGCTAGTCCTCAG 60 28081285 28081305 GGGTATAGTTGTTGACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404,ENSRNOT00000023574 1 2 2 80 1 205003890 205003910 TTACTTCAACTCCTTGGTCAG 58 205002130 205003849 CTGGTGGATACCTGTATGTG 58 NA Rattus norvegicus 81 LOC100362338 ENSRNOG00000033625 ENSRNOT00000043796 3 1 1 60 17 11037632 11037652 AATTGAAGGTGTTTATGCCCG 60 11037592 11037610 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst13 ENSRNOG00000025930 ENSRNOT00000029915 2 1 1 231 4 122231141 122231159 AAACAAAGTTCTGGGCTCC 58 122225219 122225237 CACGTAGCAGTACAGAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Mir876 ENSRNOG00000041320 ENSRNOT00000063073 2 1 1 61 5 52461697 52461718 TGTGGATTTCTCTGTGAATCAC 59 52461657 52461678 GAATTACTTTGCAAACCACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr802 ENSRNOG00000045828 ENSRNOT00000045027 1 1 1 60 4 71880868 71880886 TCTTCACCTACATGCAGCC 60 71880826 71880844 AGCACAACTACCTTGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000090071,ENSRNOT00000084230 1 3 7 117 1 83653320 83653338 AAGCAGAGGAAGCTCTCAG 59 83653417 83653703 GTTGGCTGATCTTCATGAGAG 59 NA Rattus norvegicus 81 AC105662.1 ENSRNOG00000060851 ENSRNOT00000081220 3 1 1 87 5 173003686 173003707 GATCCAGGAGGAGAAGCAG 59 173003617 173003637 AGGGAAGACCTCATTCAAGTC 60 NA Rattus norvegicus 81 Brf1 ENSRNOG00000014595 ENSRNOT00000019689 3 1 1 80 6 137789392 137789410 TAACGTGTATGTGCTGGGA 59 137782417 137789349 AAGCATGGGTCTATAGCTGG 59 NA Rattus norvegicus 81 Vegfb ENSRNOG00000021156 ENSRNOT00000050891 3 1 1 80 1 222241458 222241764 AGAAGAAAGTGGTGTCATGGA 59 222241398 222241416 CCATGCTCAGAGGTACCAC 60 NA Rattus norvegicus 81 AABR07069282.1 ENSRNOG00000012119 ENSRNOT00000016174 1 1 1 80 8 15942027 15942047 GAGTCTGCTGAAGAACTACAG 58 15942087 15942109 GATGGGAGATCAAGTTCTGAG 58 NA Rattus norvegicus 81 AABR07044714.1 ENSRNOG00000053936 ENSRNOT00000089481 3 1 1 81 20 18157213 18157231 CTTTCCTTAACCACGGGAG 58 18157276 18157296 GAAGTGACCACAGGAATCG 58 NA Rattus norvegicus 81 Camk2n2 ENSRNOG00000038184 ENSRNOT00000058131 2 1 1 91 11 83975608 83975626 GACACCAACTCCTTCTTCG 58 83975681 83976480 TCATCCTCGATCACCACTC 59 NA Rattus norvegicus 81 Lrp8 ENSRNOG00000013064 ENSRNOT00000017575 2 1 1 80 5 127451784 127454494 ACTGTAAAGCTGTAGCTGG 57 127454538 127454556 GCTTCACCAGGTCTATTCG 58 NA Rattus norvegicus 81 Rn60_8_0102.1 ENSRNOG00000008114 ENSRNOT00000010872 3 1 1 60 8 10140096 10140117 CAAGAGAAGAAAGTTGTTCCAG 58 10140138 10140156 CGAGTGCTTGTCTCATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000007866 3 1 5 80 8 6152394 6152413 CAGCTACAGATGGAGAAGGA 59 6140501 6152354 ATTTAACACTTCCTGTGGTCTC 58 NA Rattus norvegicus 81 Atp6v1f ENSRNOG00000007392 ENSRNOT00000009737 3 1 1 86 4 56744688 56744706 CTTAACAAGAACCGCCACC 59 56744754 56747227 TAGAAACTGCCTGAAAGTGTC 58 NA Rattus norvegicus 81 Lig1 ENSRNOG00000014193 ENSRNOT00000019799 2 1 1 80 1 75389668 75389686 CCTGATGGTGAAGACCCTG 60 75389730 75391009 TCCTTCTTCAGCTTGAGCC 60 NA Rattus norvegicus 81 C8g ENSRNOG00000028701 ENSRNOT00000061904 3 1 1 83 3 2725038 2725056 CCTGAATGCGTTTGAGGAG 59 2724904 2724993 TCACAGAAACCATACTTGGGA 59 NA Rattus norvegicus 81 LOC690521 ENSRNOG00000048094 ENSRNOT00000075275 1 1 1 60 3 149791165 149791183 TTCTGTTCTGAGTACCGCC 59 149791205 149791225 CATCACCAATGGATAAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49i7 ENSRNOG00000048253 ENSRNOT00000073877 1 1 1 80 4 162721835 162721855 CATGGATGTAAACGGATCTGC 60 162718394 162721796 CTGAAGGAACTTCCTTTCATCC 59 NA Rattus norvegicus 81 Galntl6 ENSRNOG00000038976 ENSRNOT00000059580 2 1 1 80 16 35573296 35577074 CTCTCCTCAACCAAATTGCAC 60 35577116 35577134 ACCCAAAGTGACTGTGGTC 60 NA Rattus norvegicus 81 Zfp536 ENSRNOG00000014163 ENSRNOT00000018956 2 1 1 117 1 93866651 93866669 CTTCGAGACAGGAACCTGG 60 93853226 93866571 TGTAAGGCTTCTCACCTGTG 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 2 4 4 80 9 104657607 104663123 ATGAAGACTATGATGGCTTAGG 58 104657548 104657566 ATAGGGAAGTTGTGCAAGC 58 NA Rattus norvegicus 81 LOC498236 ENSRNOG00000025987 ENSRNOT00000036094 2 1 1 80 13 53030916 53031566 GAGGAATATGCAGCCTTCAG 59 53030855 53030874 GATGTAGAAAGTCTGCACGG 59 NA Rattus norvegicus 81 LOC691015 ENSRNOG00000043512 ENSRNOT00000068656 1 1 1 60 1 177592213 177592234 GATTCACATTCACTTATGCCAG 58 177592174 177592192 CTGGATGAAATCCCTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr299 ENSRNOG00000031394 ENSRNOT00000043726 3 1 1 60 1 213011367 213011389 GGTTACCTTATTGTACACAGCAG 60 213011329 213011349 CCTCAGAGAATAAATGACGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3c3 ENSRNOG00000017840 ENSRNOT00000066816 2 1 1 80 18 22983472 22984055 ATGTCTATGGAGAACTTAGTGGAG 60 22984094 22984112 GAGATCGTGGTCAGATGGT 59 NA Rattus norvegicus 81 Khnyn ENSRNOG00000020506 ENSRNOT00000027802 3 1 1 80 15 34554611 34554629 TGAGTCTGTTGTCCCTGAC 59 34554673 34560672 GCTTCACCATGAACCTGTC 59 NA Rattus norvegicus 81 Lilrb3 ENSRNOG00000054954 ENSRNOT00000084439 2 1 1 80 1 63739218 63739514 TGAAGAGGCCCAGAAAGAG 59 63739557 63739576 TTCTGCTGGTCTCTATCCCT 60 NA Rattus norvegicus 81 Olr300 ENSRNOG00000033032 ENSRNOT00000050237 2 1 1 60 1 213040157 213040178 TTATCACAGTCATTCACAGCAG 59 213040195 213040217 TTGACTAGGAAGAAGTACATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 3 1 1 69 1 229349178 229349196 ATGCTTCATTCGATGCTCC 58 229349873 229351031 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Fam196b ENSRNOG00000032329 ENSRNOT00000050610 1 1 1 60 10 19368123 19368141 CTTCCTCCATTCCAAGGCA 60 19368165 19368183 TTACTGGCACCTATCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yeats2 ENSRNOG00000023107 ENSRNOT00000064212 1 1 1 80 11 84374551 84374569 GCCTAATCCTGAGTCACCC 60 84371388 84374511 GTTGATATTGGAGAACCTGAGAC 59 NA Rattus norvegicus 81 Prpf38a ENSRNOG00000009451 ENSRNOT00000012635 1 1 1 80 5 128184776 128186208 ACTTACAGCTGAACTTGTAGTC 58 128184717 128184736 GTTGGCTTTATGTTTCCACC 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000029267 ENSRNOT00000050345 3 1 1 60 15 23649623 23649642 CAGAATCAAGCGATTCCTGG 59 23649582 23649602 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564550 ENSRNOG00000032558 ENSRNOT00000042211 1 1 1 60 10 78417196 78417215 GACCCAGTAAGATTAGAGCC 57 78417238 78417256 GTCTCCAGCTTCTCTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd69 ENSRNOG00000056783 ENSRNOT00000091644 1 1 1 80 4 163042186 163043429 TTTAACAGCTGGTTCAACGTG 60 163042126 163042144 CTCGCAGTCTACAGAAGCA 60 NA Rattus norvegicus 81 Kif2b ENSRNOG00000002535 ENSRNOT00000003421 2 1 1 60 10 79096609 79096630 AAGTGTACGATCTGCTAAACTG 59 79096570 79096588 TGCTGATTTCCATCCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 2 2 2 80 1 104136037 104139849 ATATGGATCTTTCGTCTACTGG 57 104139890 104139908 ATCTGGTTGAGGTAGGTCC 58 NA Rattus norvegicus 81 Ccbl2 ENSRNOG00000043426 ENSRNOT00000067165 2 1 1 80 2 248667436 248667454 TACGACTGTTATGAGCCCA 58 248667495 248668070 CCCATCTGTTCTTACAGATCTC 58 NA Rattus norvegicus 81 Ccbl2 ENSRNOG00000043426 ENSRNOT00000067165 3 1 1 80 2 248676258 248679941 CAACTCCTTTACAGGCAGC 59 248679982 248680003 AATTGAAGTAACACTCTGGGTC 58 NA Rattus norvegicus 81 Myh6 ENSRNOG00000025757 ENSRNOT00000023302 2 1 1 80 15 33625531 33625772 AGAGACCTACCTTCTGGAG 57 33625469 33625490 AGGATCTGGTAGAAGATATGGT 58 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 1 2 2 80 4 123662976 123662995 CTCTGCCTCCTCTTAGTCTG 59 123657790 123662934 GAAGTAGACAACCTTGCCTG 59 NA Rattus norvegicus 81 Bag5 ENSRNOG00000011527 ENSRNOT00000015333 1 1 1 60 6 136277590 136279251 GTGCTTGTGAAACTGAACAC 58 136277549 136277570 CTACTAATAGAAGGGTGTTGGT 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prtn3 ENSRNOG00000029814 ENSRNOT00000014687 2 1 1 80 7 12643863 12644419 GCATTTGCTTCGGAGACTC 59 12643801 12643819 ATTCGCGAATCACGAAGGA 60 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 1 2 2 87 3 122942746 122943058 TCTCAATGCCAGGATGTGG 60 122942677 122942695 TGTTGACCATGGGAGACAG 59 NA Rattus norvegicus 81 Cwh43 ENSRNOG00000002174 ENSRNOT00000002980 3 1 1 80 14 37334033 37334052 GCTACATCACTTCAGAGCCT 60 37329982 37333993 CTGAGCTGTCAATATCCTTCAC 59 NA Rattus norvegicus 81 Tuba1c ENSRNOG00000015544 ENSRNOT00000020932 2 1 1 81 2 199199996 199200014 TCTTCAGTGAGACAGGAGC 59 199200056 199200208 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Opalin ENSRNOG00000022386 ENSRNOT00000030656 2 1 1 91 1 260326435 260328606 ATATCCGAGAATCCTAGGCA 58 260326363 260326382 CTTCCTGAGACAGTCTTCAC 58 NA Rattus norvegicus 81 Zfp259 ENSRNOG00000018481 ENSRNOT00000025149 2 1 1 80 8 50566281 50566461 ACCTTAGAAACGAAGTGCTC 58 50566504 50566522 GGACAAGCTTCATGTTGGT 58 NA Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 3 2 2 80 17 9779308 9779326 CACTGTCCTCCAGTTTGTC 58 9779014 9779264 CCACTAGGCCTTCAATGTC 58 NA Rattus norvegicus 81 Fam210b ENSRNOG00000004466 ENSRNOT00000005901 2 1 1 129 3 170360232 170360250 TAAGCAAATCCCAGCAGCT 60 170360342 170361172 GACATGTCTATGCCACTGGA 60 NA Rattus norvegicus 81 LOC103692716 ENSRNOG00000059714 ENSRNOT00000086310 1 1 1 80 6 135109999 135110170 GAGTATCTGAATTTCATCAGAGGG 59 135109942 135109961 GCTTTGTTGCAGCATTTCAC 60 NA Rattus norvegicus 81 Copg2 ENSRNOG00000011014 ENSRNOT00000033706 3 1 1 80 4 58100395 58100948 GCTTCGAGATGATGGAGGT 59 58100333 58100352 CTCTCAGGGTTCTCTTCCAC 60 NA Rattus norvegicus 81 RGD1562114 ENSRNOG00000016193 ENSRNOT00000021677 3 1 1 80 7 12399713 12399735 GCTTGTTCTACGTAATTACTGGG 60 12399012 12399676 GTGGCTTCTTTAGTCTAAAGGC 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 1 2 3 85 6 135088718 135089318 GCCTTCAGATCAACTCCAG 58 135087760 135087779 TGAGTCTCCATCATAAGGGT 58 NA Rattus norvegicus 81 Pus7 ENSRNOG00000010572 ENSRNOT00000014063 1 1 1 80 4 7918416 7918435 GGCTTCATCAACTACTACGG 58 7918477 7921292 CTGTAGAATTGCTCTTCCGA 58 NA Rattus norvegicus 81 Clec1a ENSRNOG00000060460 ENSRNOT00000091602 1 1 1 80 4 163214332 163214351 GATGACACCACCATAAGCCT 60 163202063 163214289 TGTCCCATTCTCTGAGTGC 59 NA Rattus norvegicus 81 Vapb ENSRNOG00000005331 ENSRNOT00000007554 1 1 1 80 3 171861783 171864521 ATATGGAGGCAGTATGGAAGG 59 171864563 171864581 CTGCTGGCAATTCAAACAC 58 NA Rattus norvegicus 81 Kcnmb4 ENSRNOG00000054458 ENSRNOT00000085579 1 1 1 81 7 59514455 59514473 ACAACTCCGAGTCCAACTC 59 59490340 59514411 GGGATATAGGAGCACTTGGG 60 NA Rattus norvegicus 81 Olr1870 ENSRNOG00000045610 ENSRNOT00000044955 1 1 1 60 7 9342383 9342403 CCTTAAACCATCAGTCAAGCA 59 9342423 9342443 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il22 ENSRNOG00000007365 ENSRNOT00000009776 1 1 1 93 7 61236682 61236816 GAGGAGTCAAAGCCAAGGA 59 61236873 61236891 TGGAATCTGTCTGACTGGG 59 NA Rattus norvegicus 81 Kat8 ENSRNOG00000019585 ENSRNOT00000026527 1 1 1 80 1 199362803 199362900 TCATTATGTGGGCTTTAACAGG 59 199362939 199362959 GCATCCTTCACTGTCTTAGTC 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288,ENSRNOT00000079535,ENSRNOT00000091789 2 3 3 80 8 82099966 82104548 CTAAGGAGATGACAGAAACTATGG 59 82104587 82104605 GCCTCTCATCATTCAGGTC 58 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 3 3 3 80 5 173479581 173480056 CACTCTGTTTGATGAAACCCA 59 173479521 173479540 CTCCTGATCAGAAAGATGCC 58 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221,ENSRNOT00000066037 1 2 2 80 7 11695526 11695545 GCAAGGTTACAAGGACAAGG 59 11693374 11695483 ACCTTCACACCTTCCTGTC 59 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 2 2 2 80 11 70096538 70103143 CAATGCGTACAGTAGCATCC 59 70096477 70096498 GCAGTGAAGAAGAGATTAAGGT 58 NA Rattus norvegicus 81 Mus81 ENSRNOG00000020617 ENSRNOT00000028015 2 1 1 80 1 220864723 220864742 CCCATACAGTTCGCAAACTG 60 220864580 220864681 CAGGTCTTTCTGGGTCTCTG 60 NA Rattus norvegicus 81 RGD1564308 ENSRNOG00000038819 ENSRNOT00000059317 3 1 1 80 16 49492746 49492764 GGGACAAATATCAGCCACC 58 49492805 49492917 TAACATTGGCATAACCGTATCC 59 NA Rattus norvegicus 81 Tnfaip6 ENSRNOG00000050792 ENSRNOT00000070792 2 1 1 80 3 37560120 37564015 TCATCAGCACAGGAAATGTC 58 37564055 37564076 CGTATTTAATCTGGAAGCCTCC 59 NA Rattus norvegicus 81 Smyd4 ENSRNOG00000026783 ENSRNOT00000029866 2 1 1 80 10 62221041 62221062 ACACTGAGGACATTTCATTGTG 59 62221100 62223780 CTTTAAGACATGCTTCATGCTG 58 NA Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000077026 1 1 2 80 X 140880707 140888261 AACACATGAAGTGTTGTCCTG 59 140888303 140888321 GCATACCAACGTCAGTAGC 59 NA Rattus norvegicus 81 Glt1d1 ENSRNOG00000000961 ENSRNOT00000064526 3 1 1 80 12 32698422 32698443 ATTCCTTGTCATATGTGGACTC 58 32697304 32698383 GTTTCTTGATGCCATTCTGAG 58 NA Rattus norvegicus 81 Trpm5 ENSRNOG00000020484 ENSRNOT00000040850 1 1 1 80 1 216269966 216269985 CAGTGTACGACTTTGAGCAG 59 216268708 216269923 GACTCTTGCAGGCTTTCAC 59 NA Rattus norvegicus 81 Trpm5 ENSRNOG00000020484 ENSRNOT00000040850 2 1 1 80 1 216261101 216263461 TGAAATTGATGAGGCCCGT 60 216261039 216261058 GCATAGAGATTAGGGCAGGA 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000065748 3 2 3 80 11 11127136 11127156 CACAAGCATTAGTGTTTCCTG 58 11125738 11127096 AGACACCAGATCTTGTATTCC 57 NA Rattus norvegicus 81 Rnf126 ENSRNOG00000009028 ENSRNOT00000012317 2 1 1 88 7 12825321 12825486 CCATTTGAGAATGTGGACCA 58 12825537 12825555 ATCTCAAAGCTGTCGTCGA 59 NA Rattus norvegicus 81 Olr1607 ENSRNOG00000006746 ENSRNOT00000008805 1 1 1 60 15 12363520 12363540 CATAGACCCTCATCTTCACAC 58 12363562 12363580 GTCGATGATGGAGAGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl1 ENSRNOG00000009643 ENSRNOT00000012812 1 1 1 82 10 86712036 86714573 AGAGATACGCTCCTTGCTC 59 86714619 86714637 TTGTGCCTTTCCTTCTCGT 60 NA Rattus norvegicus 81 Fryl ENSRNOG00000002248 ENSRNOT00000003061 3 1 1 80 14 37674836 37678309 GTTAGCAAGGCTCACTATCC 58 37678352 37678370 AAATCAAGCATCAGTGCCT 58 NA Rattus norvegicus 81 Zfp281 ENSRNOG00000058643 ENSRNOT00000088133 1 1 1 113 13 53507251 53507271 CTCAACGAAATCGGTAGCG 59 53531491 53531509 CTCCATCTCAGCTCTCCTG 59 NA InUTR Rattus norvegicus 81 AABR07058968.1 ENSRNOG00000047477 ENSRNOT00000074622 2 1 1 80 7 145575204 145575941 CTATTCTAGTCTCTTGCCAGGA 59 145574357 145574375 TTCCAGAGTCAGTGGTTCC 59 NA Rattus norvegicus 81 LOC100363779 ENSRNOG00000048062 ENSRNOT00000067437 2 1 1 112 6 142585051 142585150 AGCTACATGTGTCCACTCC 59 142584957 142584975 TACTGGTGAAGGTGTAGCC 59 NA Rattus norvegicus 81 Rrs1 ENSRNOG00000007240 ENSRNOT00000009482 3 1 1 60 5 9431415 9431434 TCATGAACAGCAAGAAACCT 58 9431374 9431392 TCCCTCATCTGCTTGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3bp1 ENSRNOG00000009360 ENSRNOT00000012480 3 1 1 81 7 120133773 120133791 TGTGTCCTCCATTCAGGTG 59 120133831 120134151 GAAGTTGATATCTCCAGGAAAGAG 59 NA Rattus norvegicus 81 Syt4 ENSRNOG00000017333 ENSRNOT00000023594 2 1 1 80 18 24176286 24176304 TACAAACACGCTCACTGTG 58 24175239 24176243 ACGTAGGGATCTGAAAGTCC 59 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240,ENSRNOT00000082970 1 2 2 80 X 128584077 128584095 GAGCTACTGAAAGACTGGG 57 128584138 128584871 TCTGTCTGTTAGAGCTTCCT 58 NA Rattus norvegicus 81 Txndc12 ENSRNOG00000008090 ENSRNOT00000010700 3 1 1 80 5 128473272 128473292 CGCCCTGAAATCATCAATGAG 60 128473332 128475137 CATCCCTTGAACAACTTGCTC 60 NA Rattus norvegicus 81 Rn60_X_0768.3 ENSRNOG00000051760 ENSRNOT00000077359 2 1 1 60 X 76748634 76748653 CACATTAGTACCCAGACCCA 59 76748673 76748694 GCAATGGACTTAGTAGTACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 2 2 2 80 4 115821542 115828220 AGACTCCTTCTCTGATCCC 58 115828264 115828282 TTCAGGGTGTTCTTCTCCA 58 NA Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 3 1 1 69 7 12437411 12437433 CCTACTTCAAGGTCAAGAAATGG 60 12437462 12438759 GAACCTCTCGTGTCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100363638 ENSRNOG00000029121 ENSRNOT00000045320 1 1 1 80 6 141384165 141384270 CCTTCCTGGTATCCTGTCTG 59 141384104 141384122 GTGAGGGAGAGTGACTGTG 59 NA Rattus norvegicus 81 Ntn1 ENSRNOG00000003947 ENSRNOT00000005255 2 1 1 82 10 54806613 54810342 CTTGCATTAAGATTCCTGTAGC 58 54775877 54775895 CTTGCAGTAGGAGTCACAG 58 NA Rattus norvegicus 81 Srsf1 ENSRNOG00000050323 ENSRNOT00000073005 1 1 1 80 10 75336053 75336422 GAGTGGTTGTTTCTGGACTG 59 75336463 75336483 AACATACATCACCTGCTTCAC 59 NA Rattus norvegicus 81 LOC100911256 ENSRNOG00000049104 ENSRNOT00000052408 2 1 1 80 6 91242403 91242421 GTCGCTAATGGCTTCTGAG 58 91242077 91242359 TCATCCAGTTTCCTGAGGT 58 NA Rattus norvegicus 81 Gcm1 ENSRNOG00000007932 ENSRNOT00000010583 1 1 1 80 8 85357593 85357616 GACTTTGATCCTGAAGACAAAGAG 60 85357651 85363700 GTCAGTCTTCTTCACATTCTGAG 59 NA Rattus norvegicus 81 Olr1540 ENSRNOG00000049405 ENSRNOT00000060892 1 1 1 60 11 43330528 43330549 TTCTACACTGTCATAATCCCTG 57 43330569 43330588 TTTGCTTGTTTCTCAGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf16 ENSRNOG00000061530 ENSRNOT00000090665 3 1 1 83 X 76794697 76796078 TTGGATCGAAGAAACTCACAC 59 76796123 76796141 ACAAGGTGGATGCATAGGT 59 NA Rattus norvegicus 81 Map3k2 ENSRNOG00000014089 ENSRNOT00000060996 3 1 1 80 18 25007450 25007468 ACTGTCTTTAAGCAGCCCT 59 25007512 25008402 GGGTAGCTTTCTCCATCCA 59 NA Rattus norvegicus 81 Stpg2 ENSRNOG00000023457 ENSRNOT00000029382 1 1 1 80 2 244638254 244646479 TGATTATCAGGTGGTTAGAGGA 58 244646517 244646538 TCTTCTCTTGACAAGAAAGCAG 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 2 2 2 82 6 132551491 132551509 GCCGGATCAACATCTACCA 60 132551554 132555560 GATCACAACCTGCTGATCCT 60 NA Rattus norvegicus 81 Sap130 ENSRNOG00000016773 ENSRNOT00000022761 2 1 1 80 18 24461641 24464595 AGTACCCAGTTTCAGCTCAG 60 24464638 24464656 TCAGGTGGACTGTAGATGC 59 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000081162 2 1 2 60 20 3975886 3975905 GATTACTGCAGTGACTTGCT 58 3975845 3975864 ATGCTTGGATTAAAGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim22 ENSRNOG00000042344 ENSRNOT00000066754 3 1 1 116 10 10767363 10767381 AGGAAGCAGTGTGAGTTCC 60 10766966 10767283 GTCCCATCTCAGCTACCTC 59 NA InUTR Rattus norvegicus 81 Ddx46 ENSRNOG00000021637 ENSRNOT00000029885 3 1 1 80 17 9490201 9491641 CTTCACGGAGGTATTGATCAG 58 9490141 9490159 GGCTACGAGAAGTTTGCAG 59 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 1 2 2 82 6 93549992 93551765 GAAACCTGAAGAGGTTACCTG 58 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834,ENSRNOT00000047602 1 2 2 60 1 264094100 264094597 AGAGATTTCCAGCAAGTGTG 58 264094619 264094638 CTGATGTCTCCAGGAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 2 2 2 81 1 105311388 105314761 ATAACAACTGCTACAGGGAC 57 105314805 105314823 GAGAAGATGACGAACCCAG 58 NA Rattus norvegicus 81 Cyp4a8 ENSRNOG00000008842 ENSRNOT00000012448 1 1 1 80 5 133982987 133983006 GACCCTTATCGATTTGCACC 59 133980048 133982944 AATGCAGTTCCTTGCTCCT 60 NA Rattus norvegicus 81 Cpsf3l ENSRNOG00000019712 ENSRNOT00000026725 2 1 1 80 5 173336469 173336555 CCATCTCAAGAGCACCCTC 60 173336597 173336617 TGGATAAGAATGGACTCCACG 60 NA Rattus norvegicus 81 RGD1564318 ENSRNOG00000050000 ENSRNOT00000057971 2 1 1 60 11 86092651 86092669 AACAAATACATCGCCAGCA 58 86092693 86092711 TGTTGCGAGATCTCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564318 ENSRNOG00000050000 ENSRNOT00000057971 3 1 1 60 11 86092482 86092502 TCCCACACTCACAGTATTTCC 60 86092524 86092542 CAGTGTGGCTTTGTTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1553 ENSRNOG00000046886 ENSRNOT00000060877 2 1 1 60 11 43561647 43561667 TTATCATCCACAGTGACACCA 59 43561607 43561625 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653 1 1 2 95 10 16792786 16792804 TTTGATCGTGATGAGCGTG 59 16786791 16792729 AACATGGTGATGATAACTCCC 58 NA Rattus norvegicus 81 Polr3c ENSRNOG00000033560 ENSRNOT00000028815 2 1 1 80 2 198843621 198843640 CAATGCTCCGAATGAGTGAG 59 198841791 198843581 ATCTGAAGATCTCATTGGAGGA 59 NA Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000055957 3 1 2 96 10 70370600 70370618 CAAGACAACCACAGAGCTC 59 70374938 70374956 CATACTCAGCTTCCAGGTC 57 NA DesignNoJunction Rattus norvegicus 81 Nlrp6 ENSRNOG00000014685 ENSRNOT00000019808 1 1 1 80 1 213689947 213690995 GTATTCTGACCTTGTCACACTG 59 213691036 213691054 GGGAAGGAGCTACCTTCAG 59 NA Rattus norvegicus 81 Cnot3 ENSRNOG00000053234 ENSRNOT00000088502 2 1 1 80 1 64132550 64133211 CTATCTGGAGGGAACCAAGG 59 64132489 64132509 ATATACTTGGTGTGGAATCGC 58 NA Rattus norvegicus 81 LOC100912233 ENSRNOG00000048600 ENSRNOT00000043926 2 1 1 86 14 658743 659517 TGAATCAAGTCCTAGGGTGC 60 658676 658696 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Ifna5 ENSRNOG00000031046 ENSRNOT00000049705 2 1 1 60 5 107039688 107039706 GCTCAAGCTATCCTTGTCC 58 107039646 107039664 TTGATGTGAAGAGGCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000083674,ENSRNOT00000090706,ENSRNOT00000077110 2 4 4 80 17 34787707 34791414 GGTTTGACTTCAGAGCAGAG 59 34791455 34791475 TGCTATGTTTAGGAAGGTGTG 58 NA Rattus norvegicus 81 Olr1091 ENSRNOG00000050907 ENSRNOT00000071081 2 1 1 60 7 15629463 15629481 AAGGGTCCAAAGTCTCTGG 59 15629504 15629523 GGGTGAGGACTGTATAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkln1 ENSRNOG00000054514 ENSRNOT00000081707 1 1 1 80 4 58748920 58765353 GAGAAAGAGAATGGTCCTAGTG 58 58765393 58765412 GCCCAATGTGTAGATTTGTC 57 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 3 2 2 89 7 12877160 12877178 GCTGATCTGCAAGTCTGAG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Fam114a2 ENSRNOG00000002423 ENSRNOT00000058619 1 1 1 81 10 42927494 42927512 AGGCAGAGACTTCTCTTGG 59 42923466 42927449 CTGGCACTTGTTTCTCCTG 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000077380,ENSRNOT00000001373 2 2 2 80 12 37446432 37446549 GGAGTACTCCGACTACTCC 58 37446591 37446611 CTTGACAGGGATATTCTGCTC 58 NA Rattus norvegicus 81 LOC100911100 ENSRNOG00000045867 ENSRNOT00000051470 3 1 1 60 5 137583972 137583993 AGTGTCTTTGTGGTTCTTACTC 58 137583933 137583953 TGGCAATATGAATGTAGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hif1an ENSRNOG00000014234 ENSRNOT00000019070 3 1 1 83 1 264312464 264315092 CATGGAAGGGAATGTGACAC 59 264315136 264315156 AAGATGCATCTCTTATGGCCT 59 NA Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 3 1 1 65 11 87222292 87235307 CACATCTCTGGAGCTGAGG 60 87222245 87222264 CTTCTCACCCATGAAGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07061131.1 ENSRNOG00000049268 ENSRNOT00000040075 2 1 1 80 4 106289845 106290589 GTTCTTCTGGATTTCTGCTTCC 60 106290630 106290648 TGACTTCCAAGGCTGACAG 60 NA Rattus norvegicus 81 Acadm ENSRNOG00000009845 ENSRNOT00000013238 1 1 1 80 2 260143121 260145820 TTTAGCTTCGAGTTGACGG 58 260143059 260143078 GACCGGGATTATTTCCTCTC 58 NA Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 3 2 2 80 14 1776336 1776354 GAAACAAACAGCAGACTGC 58 1774299 1776293 TGTTCCATATCTGCTGTCTC 57 NA Rattus norvegicus 81 Aaed1 ENSRNOG00000018886 ENSRNOT00000066230 2 1 1 88 17 1827471 1829556 TCCTCCAAGAAGCAGATGTC 60 1827262 1827283 AGAATATCCAGTCAGTTTGCAG 59 NA Rattus norvegicus 81 Ran ENSRNOG00000000938 ENSRNOT00000001247 3 1 1 80 12 31323155 31323259 GAGAAGAAGTATGTAGCCACC 58 31323095 31323114 GTTGAACTTGATGGGTCCTC 59 NA Rattus norvegicus 81 Htra2 ENSRNOG00000022448 ENSRNOT00000037333 2 1 1 80 4 113885443 113885724 ATGCAGCTATTGACTTTGGA 58 113885167 113885185 CCTTCATGGTGTTCACTCC 58 NA Rattus norvegicus 81 Cul7 ENSRNOG00000017857 ENSRNOT00000024266 1 1 1 80 9 16630527 16630679 TCTCAACCATCTAAAGGCGG 60 16630466 16630486 ATTGCCTTGTTAAGCACTTCC 60 NA Rattus norvegicus 81 LOC100912024 ENSRNOG00000032944 ENSRNOT00000046475 2 1 1 60 5 116973375 116973394 CCACGACAATACAAGATCCC 59 116973414 116973435 TCCTATCCTTTACGTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tst ENSRNOG00000000186 ENSRNOT00000050511 2 1 1 80 7 119616781 119622455 ATGCAGTAGGACTGGACTC 59 119616719 119616737 CGAAGCCATCTTCTGTCAG 58 NA Rattus norvegicus 81 Zswim7 ENSRNOG00000002970 ENSRNOT00000003974 1 1 1 80 10 48593301 48596020 CTCTTATCGCTGAAGTTTGTG 57 48593241 48593262 GATTAAAGTGACTGACTCTCGA 58 NA Rattus norvegicus 81 Fgf22 ENSRNOG00000008960 ENSRNOT00000011936 2 1 1 88 7 12830156 12831497 GCCAGGACAGTATTGTTGAG 59 12830087 12830106 ATTCATGGCCACATAGAAGC 58 NA Rattus norvegicus 81 Chmp4c ENSRNOG00000010238 ENSRNOT00000013720 3 1 1 98 2 93578088 93578106 CAAGACATCACAGAGCAGC 59 93575745 93578027 CAGAAGCTCATCCTCATCGA 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 1 2 2 84 7 49531792 49531810 AAGTACCAGTGCACAAGCT 60 49531855 49589071 ATGTATTGATACACCTCTCGGA 59 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 3 1 2 171 9 15626099 15628717 GGACAACACCATTGACTTCC 59 15624544 15625970 CCAGTTAATTGTTCTACTGACCTC 59 NA Rattus norvegicus 81 AABR07065593.2 ENSRNOG00000058841 ENSRNOT00000085594 2 1 1 60 6 136183884 136185544 CACAGTGCTTGTGAAACTG 58 136183842 136183863 TAATAGAAGGGTGTTGGTTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lmf2 ENSRNOG00000030633 ENSRNOT00000049538 1 1 1 80 7 130322915 130322936 GAATTCTTCCCATCTGTATCCT 58 130322762 130322877 TGGACTCTTATCCTTTAGTCCA 58 NA Rattus norvegicus 81 Cys1 ENSRNOG00000058891 ENSRNOT00000089859 1 1 1 102 6 43846686 43846704 TTACTCGGAAGAGGAGCTC 58 43846602 43846620 CTCACAGACCTACAAGGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Cys1 ENSRNOG00000058891 ENSRNOT00000089859 3 1 1 104 6 43846687 43846706 GATTACTCGGAAGAGGAGCT 59 43846602 43846620 CTCACAGACCTACAAGGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 RGD1560687 ENSRNOG00000004662 ENSRNOT00000042108 3 1 1 60 7 15386240 15386258 CACCTCTGTGACTTCTTGG 58 15386282 15386300 TCTTCTTGCTGAGCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000083701,ENSRNOT00000084322 2 4 5 80 14 71626618 71627816 TCTTGTACGCCATCACAGAG 60 71627857 71627877 ACAGAATGCCATTAACAGCAG 59 NA Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 2 2 2 80 7 12773491 12773603 CCATCAAGTTTGAGCTGGAC 59 12773430 12773448 AGTCCTGGCTGTCATTCAG 59 NA Rattus norvegicus 81 Faah ENSRNOG00000045949 ENSRNOT00000015667 3 1 1 81 5 134856904 134856924 CCTTTCTCAACAGTATGCGTC 59 134855712 134856170 ACAGACTGGCGATACATCTC 59 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 2 3 3 80 13 57059542 57061983 TACATGTGATGAAGGGTACCA 59 57059482 57059501 GGAATATCATTGGTCCACCC 58 NA Rattus norvegicus 81 RGD1564942 ENSRNOG00000029141 ENSRNOT00000047522 1 1 1 80 5 133390903 133390923 CCTCATCAAACACTACAACTG 57 133390964 133397058 TTGATGAAGTTGGGTAGCTG 58 NA Rattus norvegicus 81 Stip1 ENSRNOG00000021164 ENSRNOT00000028743 2 1 1 80 1 222281349 222281466 CATAACTAATCAAGCAGCTGTG 58 222281290 222281308 ACTTCAATGGCCTTCTCAC 58 NA Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 3 2 2 85 5 133872160 133875345 TGGAGATAACGGATGGTCC 59 133875394 133875412 ATTCACATTCTGCTGCCTC 58 NA Rattus norvegicus 81 Olr810 ENSRNOG00000005398 ENSRNOT00000007150 3 1 1 60 4 72403598 72403618 CTCTTTGTCCTGATCTTGGTC 59 72403637 72403658 GAAGAATCAGAGAATTTCCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686,ENSRNOT00000050620 1 2 2 80 7 129989723 129989742 GAAGTCACAAGAACGACCAG 59 129989780 129992219 CCCTTTATTCTCTATCCAGATCAC 58 NA Rattus norvegicus 81 Faah ENSRNOG00000011019 ENSRNOT00000015961 1 1 1 80 5 134334208 134334228 CTTTCTCAACAGTATGCGTCC 59 134333017 134333475 ACAGACTGGCGATACATCTC 59 NA Rattus norvegicus 81 AC094643.2 ENSRNOG00000053040 ENSRNOT00000079128 2 1 1 61 7 11181617 11181635 GGTACCCAGCTGGATACTC 59 11181658 11181678 TGACTGCATAAGATCTGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyr61 ENSRNOG00000014350 ENSRNOT00000019501 1 1 1 80 2 251530717 251530856 AGAGGCTTCCTGTCTTTGG 59 251530655 251530674 TCTGAACGATGCATTTCTGG 59 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911,ENSRNOT00000076166 3 2 3 60 X 71166374 71166394 TGGTTACTGAATACCATGGGA 59 71165997 71166016 TCAGTCAGCCCTTTAGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304,ENSRNOT00000081291 2 3 3 80 1 198312145 198312166 AATGCAATGAGTGCCTTATACC 59 198311989 198312104 CCGGAAGTACTCAGACCAG 59 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 1 2 2 80 4 133120717 133121614 GGAAGAAATAGGTGCTTCCG 59 133120656 133120675 GTCTGCTCAATTTCCCAGTC 59 NA Rattus norvegicus 81 Klhl31 ENSRNOG00000006224 ENSRNOT00000008244 3 1 1 81 8 84945486 84959654 GATCCTAGGTGAGCTGTGG 59 84959697 84959717 CGGGTTTGTTCTTCTTGAGAG 59 NA InUTR Rattus norvegicus 81 Gnpat ENSRNOG00000019205 ENSRNOT00000026617 2 1 1 80 19 57614873 57622175 GCTCCTCTATGCGAAAGAC 58 57622217 57622237 TTGAAATCACTGACCTGTCTC 58 NA Rattus norvegicus 81 Mtnr1b ENSRNOG00000008972 ENSRNOT00000011883 3 1 1 93 8 14373623 14373641 GTCATTGTCACCACAGCTG 59 14363109 14373567 ATAAATTACCTGCGTTCCGC 59 NA Rattus norvegicus 81 Efnb3 ENSRNOG00000010320 ENSRNOT00000013955 3 1 1 115 10 56164786 56166939 GAATAAGAGGTTCCAGGCAG 58 56164690 56164710 CATAACTAGGAGAGGAGTGGG 59 NA Rattus norvegicus 81 Slc17a5 ENSRNOG00000009330 ENSRNOT00000012474 2 1 1 80 8 85908200 85908221 AGAAACTCACAAGACAATCTCC 58 85906933 85908160 ACCTTCTGTGAAGAAAGCTG 58 NA Rattus norvegicus 81 Nme5 ENSRNOG00000020118 ENSRNOT00000027244 3 1 1 81 18 27363710 27363730 AATTTGTACGTAGCACCAACC 59 27357954 27363669 CAAGCCAGATGTAAGGATCTG 59 NA Rattus norvegicus 81 Rn60_X_0721.2 ENSRNOG00000051161 ENSRNOT00000076649 3 1 1 61 X 71141499 71141520 CTTAAATGGACAAGTGTTGGAC 58 71141539 71141560 CTGTTATAAGGGACAATCTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dppa5 ENSRNOG00000000199 ENSRNOT00000000215 1 1 1 80 8 85712323 85712341 CAAGCTTCGGGCTAAATGG 59 85711838 85712279 TCCAGCTTGAGCATTCCTC 60 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 3 2 2 80 2 1446266 1446782 AACTTCAGTGGCTTCTAGACC 60 1446821 1446842 CAATGAGCGTGAGAATATGTGG 60 NA Rattus norvegicus 81 Fam13b ENSRNOG00000020384 ENSRNOT00000027663 1 1 1 80 18 27238147 27238731 GGAAAGAAATAGCAAGCCCT 58 27238086 27238107 AACTTTGTAAGCTCTGTCATCC 59 NA Rattus norvegicus 81 Gsta5 ENSRNOG00000000201 ENSRNOT00000044944 2 1 1 80 8 85556157 85556176 TGCTTCACTACTTCAATGCC 59 85556217 85559032 TCTCTTCAAACTCCACTCCTG 60 NA Rattus norvegicus 81 LOC100360499 ENSRNOG00000039562 ENSRNOT00000060645 1 1 1 60 11 47090360 47090379 TGCAGAATGCTCAACATGAC 59 47090397 47090420 CTGAAGGGATTTGTACTTGAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf34 ENSRNOG00000001331 ENSRNOT00000001799 2 1 1 81 12 39167764 39167984 TTAGAGGAACAGAACCCGG 59 39167701 39167719 CTTCCACCTCTTCAAGGCT 59 NA Rattus norvegicus 81 RGD1563835 ENSRNOG00000033603 ENSRNOT00000042756 1 1 1 60 11 64472363 64472381 GATGTGTTCAGAGACCCAG 58 64472405 64472423 CAAACTTGACCTTGGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014016.1 ENSRNOG00000050954 ENSRNOT00000073973 1 1 1 80 14 184824 186240 GGAGAAACATTGGTTCCCT 57 184762 184780 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 Rn60_10_0700.4 ENSRNOG00000051029 ENSRNOT00000076584 3 1 1 60 10 70331058 70331077 CTGAATAGGTTTGACACGGA 58 70331098 70331118 TTAATCTCCATTCCAGCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r52 ENSRNOG00000033494 ENSRNOT00000042249 3 1 1 80 4 156628427 156628446 CTATGGCTTTGCTCTCAGGA 60 156622986 156624141 CAGAGAACTCCAAGATTTGTGG 59 NA Rattus norvegicus 81 Sep15 ENSRNOG00000055257 ENSRNOT00000083750 1 1 1 80 2 250625256 250633023 GGTCTACAGATCAAGTATGTTCG 59 250633062 250633081 GAGCTCTTCAGCAATGTTCC 59 NA Rattus norvegicus 81 Elfn2 ENSRNOG00000007934 ENSRNOT00000010609 3 1 1 60 7 119895805 119895823 ACCAAGTCACCTTCACCTC 59 119895763 119895781 ATCTTGCTGTAAGGGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 2 2 2 82 6 136393197 136394309 CTTGTAAGCGGAGCTACCT 59 136394355 136394373 TGGTTGTTGGAAAGACGAC 58 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 3 2 2 80 5 134718652 134718671 ACTTCAATGAGCTAGAAGCC 58 134718713 134722176 GAGCAATGCCTTTAGTATGC 57 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 3 2 2 87 8 76426395 76427595 GAGCTCATACAGTCTCAACAG 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 RGD1566006 ENSRNOG00000028965 ENSRNOT00000046100 3 1 1 84 12 21891070 21891089 CACTTCCTGGAAGGAATCTG 58 21890711 21891023 TATCCTGCTGAGTTCCCAG 59 NA Rattus norvegicus 81 Pddc1 ENSRNOG00000045795 ENSRNOT00000073220 2 1 1 80 1 213953637 213954393 CACTCTGAGAGCAAACCCA 60 213953575 213953595 CCAGGACCTATCTTCATTGGT 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000086298,ENSRNOT00000060327 1 3 7 60 20 4096848 4096868 CCTACATTCCTCCAGAGACAG 59 4096890 4096908 CAGGGTGGAGAATCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntrl ENSRNOG00000022015 ENSRNOT00000007776 3 1 1 80 3 14336264 14336709 GGAGATGAGAATCCATAGTCC 57 14336750 14336769 GCAAGGATTTCACTGAACTG 57 NA Rattus norvegicus 81 Pycrl ENSRNOG00000054724 ENSRNOT00000087328 1 1 1 85 7 116952150 116952415 TATGGAGGAGCTGTTACCC 58 116952083 116952101 TAACCATAGCTCCCTCCTG 58 NA Rattus norvegicus 81 Amigo2 ENSRNOG00000007032 ENSRNOT00000009199 3 1 1 60 7 138705319 138705338 GCATTTAACACGGCTTTCAC 59 138705278 138705299 GTAGCACTAGGACGATACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681367 ENSRNOG00000046871 ENSRNOT00000072581 1 1 1 184 9 16518982 16519000 GAGAAACGCCACATCACTG 59 16518816 16518834 CCTCCATCGAGTTGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prp2 ENSRNOG00000005379 ENSRNOT00000007124 2 1 1 82 4 166076240 166077922 GGAACCAGAACTTCAGAACC 59 166077966 166077985 TATTACCAGGTGGTCTTGGT 58 NA Rattus norvegicus 81 Klrh1 ENSRNOG00000059182 ENSRNOT00000079813 1 1 1 80 4 163603045 163603063 ATGAAAGTGAGGCATCCTG 58 163599238 163603004 ACTGAATAAAGTTCTGCTCCTC 58 NA Rattus norvegicus 81 Tes ENSRNOG00000051952 ENSRNOT00000091095 1 1 1 80 4 44321968 44342088 AATGAAGAAGATGGGCTTAGG 58 44342129 44342148 TCAAACCCTTCACAGTTCTC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000085873,ENSRNOT00000077168,ENSRNOT00000091832,ENSRNOT00000089428,ENSRNOT00000092034,ENSRNOT00000024682,ENSRNOT00000079628,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 15 18 60 1 43507443 43507462 TCTGCCTGTAATGTTCATGG 58 43508249 43508267 GAGGGTGCAATCTATGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Timm10 ENSRNOG00000007883 ENSRNOT00000010619 2 1 1 110 3 72227241 72229676 TACAACAGAATGACCAGTGC 58 72229749 72229767 GTACTTGGATACGCATCGG 58 NA Rattus norvegicus 81 Timm10 ENSRNOG00000007883 ENSRNOT00000010619 3 1 1 110 3 72227240 72229676 GTACAACAGAATGACCAGTGC 60 72229747 72229766 TACTTGGATACGCATCGGTC 60 NA Rattus norvegicus 81 Xpa ENSRNOG00000009576 ENSRNOT00000064685 3 1 1 80 5 61777061 61777079 GTGGGAAAGAGTTCATGGA 57 61775921 61777018 TATCATCAGCATCTCTGCAG 57 NA Rattus norvegicus 81 Mad2l1bp ENSRNOG00000019463 ENSRNOT00000026331 3 1 1 91 9 17217125 17217143 GACTACTAAGCTGGCAGTC 57 17217197 17217596 CAGTCCAATCCAAATTTGGG 57 NA InUTR Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 1 1 2 89 16 3759679 3761997 CTCTGAGTCTCAAATAATGACTTGG 60 3759614 3759633 TCTTGGCTTTCTTCAGAGCA 60 NA Rattus norvegicus 81 Ly6g6d ENSRNOG00000000844 ENSRNOT00000001120 2 1 1 101 20 5064202 5064220 GATCACCTGTGGTGAAGGT 59 5062036 5062054 TAGTGATGGCTCAAGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC500227 ENSRNOG00000009917 ENSRNOT00000013312 1 1 1 89 4 114859154 114859292 CTTCCACAACGAAGAACCTG 59 114859344 114859362 GAAGATTGTGTCGGCTCCT 60 NA Rattus norvegicus 81 Prkacb ENSRNOG00000004978 ENSRNOT00000068739 1 1 1 80 2 252605439 252610737 CGATTTACCAGAGAAAGGTTGAG 60 252605381 252605401 CATAGTCATCGAAGTTGCTGG 59 NA Rattus norvegicus 81 Hmgb1-ps3 ENSRNOG00000032420 ENSRNOT00000046626 2 1 1 60 7 132983742 132983761 ATCCTGGCTTATCCATTGGT 59 132983701 132983720 GCAGTGTTGTTCCACATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akirin1 ENSRNOG00000026610 ENSRNOT00000034944 2 1 1 80 5 141417743 141418736 GTACCAAACTGGCAGAACAG 59 141417682 141417700 TTGGCCTTGTCCCATATCG 60 NA Rattus norvegicus 81 Akirin1 ENSRNOG00000026610 ENSRNOT00000034944 3 1 1 80 5 141423399 141423419 AGAGTGAAGCCTGTACTTCAG 60 141418842 141423357 TCATCCAGAAAGCACCTGG 60 NA Rattus norvegicus 81 Aatf ENSRNOG00000002778 ENSRNOT00000000258 2 1 1 80 10 71834479 71834876 AGAACCAGATAGCGTTGTG 58 71834417 71834438 GCAATTGATTGGTAGTCAAGAG 58 NA Rattus norvegicus 81 LOC100912291 ENSRNOG00000047310 ENSRNOT00000074957 2 1 1 80 5 2656417 2656438 TAAGTTCATCTCCATTAGAGGC 58 2656477 2661723 TGGTCTTCTTTATCCTGATCG 57 NA Rattus norvegicus 81 Slc38a6 ENSRNOG00000022622 ENSRNOT00000029328 2 1 1 80 6 96194124 96194143 CTTCGCCTTTGGATTACCTG 59 96198195 96209282 AGGTAAGATGACATAGCTCCA 58 NA Rattus norvegicus 81 Limch1 ENSRNOG00000002318 ENSRNOT00000064263 1 1 1 80 14 42931270 42931290 GTTGCTGAATGCTATAAAGCC 58 42858864 42931228 ATGGTGTTGTCCAATCCTG 58 NA Rattus norvegicus 81 Limch1 ENSRNOG00000002318 ENSRNOT00000064263 3 1 1 80 14 42780079 42780099 TCACTATTTCCTCGAGTTCTG 57 42779025 42780038 CCATCTTATTCCTTGTCCCG 58 NA Rattus norvegicus 81 Rgs21 ENSRNOG00000056369 ENSRNOT00000086610 1 1 1 91 13 61303251 61306759 CTAACCAAGCTGGACTGGA 59 61303178 61303196 GAAGTCTTCACAGGCAAGC 59 NA Rattus norvegicus 81 Slc22a7 ENSRNOG00000018420 ENSRNOT00000025094 1 1 1 80 9 16929228 16929249 CCCTCATACTTAGACCTGTTCC 60 16929290 16929735 GTTCACTCCAAACCACACC 59 NA Rattus norvegicus 81 RGD1562399 ENSRNOG00000032289 ENSRNOT00000058491 1 1 1 60 9 66046679 66046697 GATGCCATCTCCAAGACCT 59 66046720 66046739 TGAACACAGTCTCTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa3 ENSRNOG00000025670 ENSRNOT00000036103 2 1 1 210 14 42220575 42220594 TATCACGAAGGGTTCCAGTG 60 42218006 42218024 CAATGAAGATGGAGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07046713.1 ENSRNOG00000058962 ENSRNOT00000088143 3 1 1 81 5 2605402 2605509 GAAGGATGCTCTTCATGAATGTC 60 2605550 2605568 ATGAAGGCCATCCTCACTG 60 NA Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 2 2 2 80 4 2063322 2063343 GAACCAATATCAAACGAGAGTG 58 2063383 2063794 CAATAGGCTTGGATTCTGGT 58 NA Rattus norvegicus 81 Etf1 ENSRNOG00000019450 ENSRNOT00000026398 3 1 1 81 18 27700564 27700585 GCTACACTAGAAATTGTCACAG 57 27699615 27700523 GCAAGATACCTCCAATTCCA 58 NA Rattus norvegicus 81 Hdac10 ENSRNOG00000031915 ENSRNOT00000055865 2 1 1 80 7 130103272 130103774 AGGTCAGAGGAGAATTCTGTG 59 130103212 130103230 AGTGGAGTGGAGAAGTGGA 60 NA Rattus norvegicus 81 Glud1 ENSRNOG00000057367 ENSRNOT00000083446 2 1 1 80 16 10690553 10690573 CTAAATCACGTCAGCTATGGC 59 10690615 10691544 CTCTTGAACGGACATGAGC 59 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 1 2 2 80 5 135660912 135661126 CGCTTTCCGGAAATGTGAG 60 135660850 135660868 TAGCTGCAGAATTCCAGGG 60 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000019478 3 1 2 106 17 22635003 22635023 TTCTTGGTATTCTGGTCCCTC 59 22635091 22639969 CTGCAGTTGTTCATTGCGT 60 NA Rattus norvegicus 81 Smpd5 ENSRNOG00000037299 ENSRNOT00000056421 1 1 1 108 7 117352656 117352676 AAAGGTCTATTATCCGTCCAG 57 117352837 117353068 GAATATGTCCATCCTCAAGGG 58 NA Rattus norvegicus 81 Dok3 ENSRNOG00000013564 ENSRNOT00000018232 1 1 1 80 17 9639407 9640199 GAAGTTTGGCAAGAAATGCTG 59 9640240 9640259 CTTTCTAGCCGAGCTACTCC 60 NA Rattus norvegicus 81 Myrfl ENSRNOG00000021833 ENSRNOT00000068774 2 1 1 80 7 59814372 59815749 GGAAGTGCAAAGGTCAGTC 59 59806006 59806028 CTGGATTTCGATGATCTGAATGG 60 NA Rattus norvegicus 81 Lrrc73 ENSRNOG00000039856 ENSRNOT00000061185 1 1 1 80 9 17113102 17113120 ATGTTGGGTGATGAAGCCA 60 17112720 17113059 TGTTAGCTCCTTCAGACCAG 59 NA Rattus norvegicus 81 RGD1566099 ENSRNOG00000043374 ENSRNOT00000066601 2 1 1 80 13 55883301 55883319 CTGGCTATGTGGTTCTCAC 58 55881720 55883257 CATATGGACAGTGTCTGCA 57 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327,ENSRNOT00000038172 3 2 2 80 7 114305363 114305382 GGGACAAGATCCCTCTTCTC 59 114299777 114305323 TCTTATAGTGTCTGCTATCCGT 58 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000076258,ENSRNOT00000087175 2 2 2 80 1 85497583 85497602 ACACTAGAGTTCTTGGCCTC 59 85499563 85499699 GTAGAATGTACCGAAGGCCA 60 NA Rattus norvegicus 81 Mpp2 ENSRNOG00000059683 ENSRNOT00000092150 1 1 1 81 10 90022804 90027321 CTGAGTCTGCTATGCAGCA 60 90022741 90022759 AAGATCAGGTCCAGTTCCG 59 NA Rattus norvegicus 81 Fam228a ENSRNOG00000050114 ENSRNOT00000070908 3 1 1 142 6 30087015 30088270 AAATGAACCGACCAAACCA 58 30088491 30088510 CCTTCTCAGTTTCTTTGGCT 58 NA Rattus norvegicus 81 Bbs10 ENSRNOG00000026913 ENSRNOT00000039096 1 1 1 100 7 54031549 54031925 TTAGCCAGGATGATAGTGGC 59 54031987 54032006 AGTCCTCTGAGTAAATGGCA 59 NA Rattus norvegicus 81 Pvalb ENSRNOG00000006471 ENSRNOT00000067635 1 1 1 80 7 119438569 119438588 GCTAAGGAAACAAAGACGCT 59 119429226 119438529 CAGAGTGGAGAATTCTTCAACC 59 NA Rattus norvegicus 81 Casq2 ENSRNOG00000016243 ENSRNOT00000021846 1 1 1 80 2 204566391 204567362 GTAACCGATGCTGACAGTG 59 204567406 204567424 AATCCAGTCTTCCAGCTCC 59 NA Rattus norvegicus 81 Trim68 ENSRNOG00000047229 ENSRNOT00000075222 2 1 1 80 1 167840650 167843038 GGAGTATAAGTGGAAACTCCAG 58 167840591 167840610 TCACTGACTTCCAGTTTCCA 59 NA Rattus norvegicus 81 Glod5 ENSRNOG00000039571 ENSRNOT00000008648 2 1 1 80 X 15225725 15228237 GAGAGTCCGTTATGGAGGA 58 15228281 15228299 TACGGTCATCACAATGTGG 58 NA Rattus norvegicus 81 Ift81 ENSRNOG00000001294 ENSRNOT00000066952 3 1 1 80 12 39495024 39495046 AGAAGAGAACCCAGTATGATAGC 60 39495086 39496097 GGAGTCCTCGTACTTCCTG 59 NA Rattus norvegicus 81 LOC100361056 ENSRNOG00000013510 ENSRNOT00000018040 2 1 1 149 4 10822745 10822763 AAACTGGCGTATTTCCCGA 60 10819128 10819146 CCAGGTGAGCAGTACTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gng12 ENSRNOG00000050231 ENSRNOT00000075400 1 1 1 104 4 97758063 97759631 CCATCGAAAGAATAAAGGTCTCC 59 97759695 97759713 TTTCTGAGGTCGGTATGCC 60 NA Rattus norvegicus 81 Gng12 ENSRNOG00000050231 ENSRNOT00000075400 3 1 1 125 4 97758064 97759631 CATCGAAAGAATAAAGGTCTCC 57 97759714 97759735 GTCTTCTTATCCTTGAATGGGT 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069,ENSRNOT00000044885 3 2 2 85 3 15366360 15366378 ACAGCAGGCAAAGTTTGAC 59 15363194 15366314 CTTTGGTGACCTTAGACAACTC 59 NA Rattus norvegicus 81 Rhoh ENSRNOG00000002540 ENSRNOT00000003425 3 1 1 82 14 43992389 43992409 GAGCTACTTAGACTTCCGGAG 60 43963416 43992346 CTCAGTCACTTTGGGAACTG 59 NA InUTR Rattus norvegicus 81 Dlat ENSRNOG00000009994 ENSRNOT00000032152 2 1 1 81 8 55087619 55087637 CCGCATACTGCAACAACTC 60 55087141 55087576 TGAAGGTAGTGGAACCTTCTG 60 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 1 2 2 87 4 170781049 170781964 TGAAATGGAGTTTAACCCAGTG 59 170780983 170781001 TTCAAAGGTTTCTCGCAGC 59 NA Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000071945 1 1 2 120 6 138550227 138550245 AATCCCGACTGAGCATCAG 60 138549592 138550149 TCTTTATATCTCACTGTGTCTCTGG 60 NA Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000075284 2 1 2 109 6 138550443 138550545 TGACATTTCCAAGCTGTGC 59 138550352 138550370 TGAGAAGCCAGAGACAGTG 59 NA Rattus norvegicus 81 LOC100911959 ENSRNOG00000015409 ENSRNOT00000020785 2 1 1 80 4 157334873 157335146 GGTCCTGGAAAGTATCAGC 58 157334811 157334831 GATATGGCAGACATAGTGACC 58 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852,ENSRNOT00000017740 2 2 2 80 5 150740319 150741337 AGAAATGCATGAGAGGAAGC 58 150741379 150741398 TTCTGCCATTCTCTTTCTCG 58 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734,ENSRNOT00000086756 2 2 2 80 1 16863987 16864005 CAGATAGACGTGAAAGCGG 58 16864047 16864474 ATCAACATGACCAATGACCAC 59 NA Rattus norvegicus 81 Gpr35 ENSRNOG00000024030 ENSRNOT00000036328 3 1 1 60 9 100137889 100137909 TACAAATTGTAGCATCCTCCC 58 100137929 100137949 CAAGTAGATGGTGAAGACGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ampd1 ENSRNOG00000018656 ENSRNOT00000025248 3 1 1 80 2 205589108 205589275 GTTCCATTTCACCAAGGAGC 60 205589317 205589336 CACATGTCACAAGTGCTCAG 60 NA Rattus norvegicus 81 Ncoa2 ENSRNOG00000007975 ENSRNOT00000011026 1 1 1 80 5 5686084 5686103 CGCTAATGAACCAGATCAGC 59 5686143 5687698 CATTAATAGGAGCCTGAGTTGG 59 NA Rattus norvegicus 81 Myf5 ENSRNOG00000004768 ENSRNOT00000006453 2 1 1 81 7 49730776 49731255 CTGATGTATCAAACGCATGTG 58 49730715 49730733 GTGATCCGATCCACTATGC 58 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575,ENSRNOT00000027590 1 2 2 80 1 167286530 167286549 TTAGCACTAACATCAGCACC 58 167285862 167286488 AACGAAGCTCCTCTAATGAC 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985,ENSRNOT00000086244 3 2 2 80 12 37727871 37728818 GTGATGTTGTCTAAGATCAGGC 59 37728856 37728877 CGACTCATAATAAGCTCGAAGG 59 NA Rattus norvegicus 81 Chd3 ENSRNOG00000009722 ENSRNOT00000057058 1 1 1 80 10 55949536 55950052 ACCTCTAAACCTGCTACTCC 59 55949475 55949495 GTTCTCAGTGTCATCCTTCTC 58 NA Rattus norvegicus 81 Cd2 ENSRNOG00000015821 ENSRNOT00000021268 1 1 1 80 2 203674507 203679561 GACTTGAGGATTCTAGAGATGG 58 203674448 203674466 CAAGACTTCACAGGTCAGG 58 NA Rattus norvegicus 81 Slc34a2 ENSRNOG00000004626 ENSRNOT00000048509 1 1 1 80 14 60262441 60262459 CAATGGGTGACTCAGAAGC 59 60261887 60262399 CATTCTCCTCAATCACATTGC 58 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995,ENSRNOT00000067135 1 2 2 80 13 69928460 69929810 GACTACATTGAGGGTGGAC 57 69926062 69926081 CTGTAGGAGCTTTATCTGGG 57 NA Rattus norvegicus 81 Rbm18 ENSRNOG00000006763 ENSRNOT00000009706 2 1 1 80 3 15448913 15448933 ATAAGATCCTTCCCATCAGCC 60 15445935 15448874 TTATCTTTGCAGTGACACTGAG 59 NA Rattus norvegicus 81 Slc15a5 ENSRNOG00000007717 ENSRNOT00000010158 2 1 1 80 4 172063095 172063115 CTCTCGGATAGCAAGTACCTC 60 172057213 172063053 TAACAAGGCAGTGCCTAGG 59 NA Rattus norvegicus 81 Rn60_1_0959.1 ENSRNOG00000051237 ENSRNOT00000076542 2 1 1 80 1 94687433 94687452 GTGGCTTTGGAAATTCTCTG 57 94687494 94688850 CCATGTACCCTTTCATGTCC 58 NA Rattus norvegicus 81 RGD1565641 ENSRNOG00000038902 ENSRNOT00000059467 3 1 1 66 2 88350118 88350668 AGAAAGAGCTGAAGCACCA 59 88350698 88350716 TGAGCCATTAGTCGTGTCG 60 NA DesignRelaxed Rattus norvegicus 81 Bcl7c ENSRNOG00000018916 ENSRNOT00000025618 3 1 1 130 1 199157653 199157767 TCTCAATGATGAGAACAGCA 57 199157542 199157560 TAATCACCTCTGGAGGTCC 58 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 2 4 4 80 16 54374576 54374595 GTTGGAGATTGAAGCTAGCC 59 54374635 54375686 TTCTTGATTTCTGAAAGGGAGG 58 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 3 4 4 80 16 54373119 54373137 CAGAGTGTGAGAAGCTCCA 59 54373180 54374550 AGTTGTCAAACTGCTCTTGC 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000022022 2 1 3 80 17 30562497 30562517 TCAGGATATTATACTCGCGCT 59 30562559 30563346 TAGTAGTCACCAGCTCCTG 58 NA Rattus norvegicus 81 Lipi ENSRNOG00000033441 ENSRNOT00000045835 1 1 1 80 11 13980252 13980274 CCTACAGAGATTACAAGAGTGGT 59 13978246 13980214 CTTGAATACCAAGTCTTGGGC 59 NA Rattus norvegicus 81 LOC688981 ENSRNOG00000032000 ENSRNOT00000046585 2 1 1 60 6 96202118 96202136 CCACAAGAAGATCCTGGAG 57 96202076 96202094 TTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Murc ENSRNOG00000008027 ENSRNOT00000010561 1 1 1 80 5 64413341 64413361 CGAGTAACCAAAGTCGAAACC 60 64413400 64420177 AACATCCTCCTGGAAGATTACC 60 NA Rattus norvegicus 81 Pllp ENSRNOG00000016558 ENSRNOT00000022277 1 1 1 82 19 10748545 10748566 TGTCTTCTTCATCATCTACCTG 57 10748607 10750781 CAAAGAAGACCAGTAACACCA 58 NA Rattus norvegicus 81 Cd7 ENSRNOG00000036674 ENSRNOT00000054934 3 1 1 80 10 110230914 110230933 TTGCTGTAAGCTTCTTCCTC 58 110230317 110230872 ACAGTTTCTTGATCTGCGTC 59 NA Rattus norvegicus 81 Mir130b ENSRNOG00000035541 ENSRNOT00000053664 3 1 1 60 11 88129783 88129801 ACACTCTTTCCCTGTTGCA 60 88129825 88129843 TGCCCTTTCATCATTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068417.1 ENSRNOG00000025797 ENSRNOT00000034533 2 1 1 80 9 104478425 104478928 ACAATATGAACATCATCCCTGC 59 104478366 104478384 TGAGCTTCCTGTTCAGCTC 60 NA Rattus norvegicus 81 Arpc3 ENSRNOG00000008673 ENSRNOT00000011499 2 1 1 85 12 39656097 39656115 CAACTTTCCCATTCCTGGC 59 39655011 39656048 GCATCGTTTCATCCTCCTG 59 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631,ENSRNOT00000085414,ENSRNOT00000083623 3 3 3 88 16 10932306 10941154 CACTATCTCCCGGATCACC 59 10932236 10932254 TGTTGACTCCATCAATGGC 58 NA Rattus norvegicus 81 Rn60_1_1348.1 ENSRNOG00000051253 ENSRNOT00000075872 2 1 1 82 1 133714508 133717212 GCAGATGGGAATGGAAATCTC 59 133714446 133714467 CTTTAGATTTCCCATGTCCTGC 60 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 2 2 2 62 7 60316387 60316405 GAAGTTCTGCACTAGCAGG 58 60316431 60320004 GCTGAGCCATACACATCCA 60 NA DesignNoJunction Rattus norvegicus 81 Lypla1 ENSRNOG00000008320 ENSRNOT00000011312 2 1 1 80 5 14564639 14564660 GGTAAATCCAGCCAATGTAACC 60 14560962 14564600 TTGACATCCATCATTTCCTGC 59 NA Rattus norvegicus 81 Rn60_1_1373.1 ENSRNOG00000051176 ENSRNOT00000077008 1 1 1 60 1 136246954 136246973 AGATGTGGATCAGGAAGCAG 60 136246996 136247014 CATTGGCAGCAAACAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051562.1 ENSRNOG00000042083 ENSRNOT00000063862 3 1 1 89 3 17081247 17081470 GGATTTCTGGTACCTGTGG 58 17081176 17081195 TGCAGTTTATAGTGACCGTC 58 NA Rattus norvegicus 81 Sipa1l2 ENSRNOG00000019791 ENSRNOT00000026843 1 1 1 80 19 58295736 58300554 TGGATGAACAAGGGCTGAG 60 58295674 58295692 ACATTTCCTCTTCCGTGCT 59 NA Rattus norvegicus 81 Hvcn1 ENSRNOG00000001270 ENSRNOT00000001712 3 1 1 80 12 39823233 39823254 GGTTAAAGCAGATAAACCTCCA 59 39822895 39823195 CAATTTCTTGTTCCTTCTCGGA 59 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000080202,ENSRNOT00000034283 2 2 2 88 16 8637299 8638584 TTACTACAGGCTTTACCAGAGAC 60 8637233 8637251 ATCTGATGTTGTCCACCCG 60 NA Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 2 2 2 80 14 79865251 79865270 ACTATGTCTCTTATCGCCGC 60 79865311 79872066 TGATGATCTGTAGGTCCTTGG 59 NA Rattus norvegicus 81 Uqcrfs1 ENSRNOG00000018281 ENSRNOT00000024609 1 1 1 86 17 35678245 35681455 CCTGAATGTTCCTGCTTCTG 59 35681504 35681522 TCTAGAACTTCAGCACGGC 60 NA Rattus norvegicus 81 Arhgef25 ENSRNOG00000005034 ENSRNOT00000006800 2 1 1 80 7 70472733 70472753 GAAACTTTGTCTCAAGCTCCC 60 70472513 70472694 CTCACTCAGGACAAACATACTC 59 NA Rattus norvegicus 81 Prss57 ENSRNOG00000025293 ENSRNOT00000038553 2 1 1 94 7 12802055 12802074 AACAGGTATTTGGCATTGCG 60 12802131 12803282 AGAGCCATTCAGCCTTAGC 60 NA Rattus norvegicus 81 AABR07027277.1 ENSRNOG00000059415 ENSRNOT00000083122 2 1 1 80 17 22662059 22662077 TGTGGATGGTATCTGAGCT 58 22656205 22662016 GGAAGAAGTGTGAAGTTCCA 58 NA Rattus norvegicus 81 Lppr3 ENSRNOG00000027940 ENSRNOT00000031315 1 1 1 89 7 12661717 12661735 ACTCATGCCATCCTGTCAG 60 12661918 12662022 GAAGTACATCGAAACGTAGACAG 59 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133,ENSRNOT00000046370 2 2 2 83 11 4286163 4300197 GGTGCTAGAAATACACTATACACC 59 4286103 4286123 GTCAATGTTAAAGCCTGTCCT 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611,ENSRNOT00000042276 1 2 3 91 1 66018244 66020744 CCAAAGAGACATGAAGAGATGTC 59 66020795 66020813 GGAAGATCTCTGTCCTGGG 59 NA Rattus norvegicus 81 Rn60_1_1353.1 ENSRNOG00000051335 ENSRNOT00000076599 3 1 1 60 1 134195407 134195428 TGGACGGTATTAGTCATCACTG 60 134195449 134195467 TGTGAAGTGTGATGCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360638 ENSRNOG00000018928 ENSRNOT00000025586 2 1 1 93 1 84723296 84731823 GAGCCCAGAATTGGAAACAG 59 84723222 84723241 TTGCTTTACCCTCTGTTTGG 58 NA Rattus norvegicus 81 Rn60_1_1368.1 ENSRNOG00000051333 ENSRNOT00000076462 1 1 1 60 1 135713023 135713042 AAACAACGGGTGATTCAGAG 59 135713065 135713083 AGCAACCTGGACATTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prokr2 ENSRNOG00000021266 ENSRNOT00000028889 2 1 1 80 3 125016848 125016867 TACCTTCGTACAGTCTCCCT 59 125009938 125016808 GTGGACAATAGCGAGATATCTG 59 NA Rattus norvegicus 81 Enthd1 ENSRNOG00000025344 ENSRNOT00000034912 1 1 1 80 7 121728139 121728157 TCTGACCTCTCCTACTTCC 57 121692423 121728095 GGAGTAGACACAGCTTCTG 57 NA Rattus norvegicus 81 Cytl1 ENSRNOG00000028108 ENSRNOT00000035427 1 1 1 80 14 77808011 77808034 AAGTAGATATGCTGAAGGACAGAG 60 77806632 77807972 AGAGAAACACCAAGTCCCG 60 NA Rattus norvegicus 81 MGC114246 ENSRNOG00000039990 ENSRNOT00000061470 3 1 1 80 17 3927485 3927959 TCCATATGAAGGGAAAGATGG 57 3928001 3928019 GGTAGGGACACAAATCCTG 58 NA Rattus norvegicus 81 Herpud2 ENSRNOG00000029995 ENSRNOT00000046432 2 1 1 80 8 26268737 26268759 GCATCGTATACTTCTACTCTTCC 58 26267999 26268700 CAGCTTGGTGTAAATAAACCAG 58 NA Rattus norvegicus 81 Ccdc22 ENSRNOG00000010846 ENSRNOT00000015546 2 1 1 80 X 15753735 15753832 TGCTCTGCATGAGAATTGC 59 15753875 15753894 TCAAGATCTCGAACTTCCCT 58 NA Rattus norvegicus 81 Tmem205 ENSRNOG00000011747 ENSRNOT00000015684 2 1 1 81 8 22936445 22936464 CATCAACCTCTGCATCTTGG 59 22932505 22936402 AAGCAGTAGGGTAAGCTGAC 60 NA Rattus norvegicus 81 Sparcl1 ENSRNOG00000015093 ENSRNOT00000020357 3 1 1 80 14 7014621 7014639 AGAAAGCTGAGAGCTCACC 59 7014681 7015417 AGTTCATGCAAGAATCAGCAC 60 NA Rattus norvegicus 81 AABR07065768.1 ENSRNOG00000050944 ENSRNOT00000048463 2 1 1 61 6 140485742 140485877 AAAGGTGTCTGGTGTGAGG 60 140485699 140485717 CTTCCAGGCTGTACTAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Stx6 ENSRNOG00000003402 ENSRNOT00000035145 2 1 1 82 13 72840201 72849155 TCACATGACCAGTGATCGG 60 72849201 72849219 CTAGGAAGAGGGTCAGCAC 59 NA Rattus norvegicus 81 Olr927 ENSRNOG00000048132 ENSRNOT00000050751 3 1 1 60 7 16305389 16305409 GTCTGTTTGAAATTGGCTGGT 60 16305431 16305449 TCTGGGCTGATTCTACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000088023 1 2 6 128 12 41229496 41229514 AATGTGGCTGGTTCAAACC 59 41228383 41229404 GACCTTTGTCAGCACTTCC 59 NA Rattus norvegicus 81 Fam195a ENSRNOG00000020029 ENSRNOT00000027170 3 1 1 96 10 15231453 15231698 GATTTGTGTCCGAAGCCTG 59 15231375 15231393 GTGCTCTCCACATACTGCA 60 NA Rattus norvegicus 81 Skiv2l ENSRNOG00000000421 ENSRNOT00000000481 2 1 1 80 20 4526456 4526824 AAACACATGACCCGTACCA 59 4526394 4526413 GAATGTGTTTCGGAAGTCCC 59 NA Rattus norvegicus 81 Cd2ap ENSRNOG00000011987 ENSRNOT00000016291 3 1 1 80 9 20845906 20845926 ACATCTCACTGCAAATAGACC 58 20845968 20846676 CTCTGGGTTGGAGAATGTC 58 NA Rattus norvegicus 81 RGD1310049 ENSRNOG00000042309 ENSRNOT00000031083 3 1 1 80 1 31045922 31047539 AACCACAGAAGGATGAAATCAG 59 31045863 31045882 GATCAAGTGGTCCTCATGAG 58 NA Rattus norvegicus 81 Plcd3 ENSRNOG00000003033 ENSRNOT00000004140 2 1 1 80 10 91172425 91172447 CTCGTCCTCTCATAATACTTACC 58 91172278 91172385 GTAAAGGCCCTGATGTAGG 57 NA Rattus norvegicus 81 Plcd3 ENSRNOG00000003033 ENSRNOT00000004140 3 1 1 81 10 91174348 91174366 CAAGGAGATCAAGAGCCTG 58 91173058 91174303 GTCACACTCCTTGAAGAGG 58 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 2 2 2 80 13 68754397 68756585 TTGAAAGCAGAAGTACCACCT 60 68754337 68754357 GCGTTCAAGTAGAATGGACAG 59 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201,ENSRNOT00000079883 2 2 2 80 4 65739925 65742319 AGGAGGAGTTCAACTTTGGA 59 65739864 65739882 TATTGGAGATGCAGCCCAG 60 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488,ENSRNOT00000009693 3 2 2 80 6 105468801 105468819 AGAGTTTGATCAGCAACCG 58 105467681 105468757 CTGGTGTCAACTGAATGGC 59 NA Rattus norvegicus 81 Tfap2d ENSRNOG00000011642 ENSRNOT00000065053 2 1 1 80 9 25310029 25320649 GTGATAAGAAGAGGTGGCAC 58 25320692 25320710 ACTGAGAAGGGACAAACGA 59 NA Rattus norvegicus 81 Rab40c ENSRNOG00000020067 ENSRNOT00000027266 1 1 1 80 10 15282815 15282833 CAAAGGCGAGATTCTGGAG 58 15257868 15282776 GTCTTATAGTCTATTCCGTTGCTG 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000077874 3 1 2 65 13 73708896 73718241 AAACCTGGCTGGAAATTGTG 59 73718269 73718287 AGAAGTTGCTGGTGTTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prss56 ENSRNOG00000029865 ENSRNOT00000065805 1 1 1 88 9 94279908 94280270 CATGAATGCCAAGGACCTG 59 94280413 94280431 CGTCTTTCTCCACATGGAC 58 NA Rattus norvegicus 81 Atp6v1d ENSRNOG00000009080 ENSRNOT00000012101 3 1 1 80 6 102036047 102036068 CGAAACTTAAGCGGAATTATGC 59 102035532 102036009 CCAGAGTAACAAAGGAAGTCTG 59 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 1 1 1 60 6 141715824 141715843 AAGTTGTTGCTAAACTGGGT 58 141715653 141715802 TCACCTCACACTGAATACCA 58 NA DesignNoJunction Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637,ENSRNOT00000084712,ENSRNOT00000025795 2 3 6 80 1 41917414 41917436 GGTTGAAGAACATCAAGGATCAG 60 41916017 41917377 CATTTCTCATCTCATCTGCCAC 60 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395,ENSRNOT00000079371 2 3 3 80 5 136043345 136043366 AATGAAGAACAAGCGAGAAGAG 59 136042791 136043307 AAGCTGTTGTCATATTCCTGAG 59 NA Rattus norvegicus 81 Art4 ENSRNOG00000005670 ENSRNOT00000007485 2 1 1 97 4 170838149 170838168 TGAGTAAGAACTGCAGCCTC 60 170832233 170838089 CTTGCTGGAAGCTTTCAGC 60 NA Rattus norvegicus 81 Isx ENSRNOG00000039808 ENSRNOT00000061079 2 1 1 90 19 14215553 14215571 TTCCACTTCACCCACTACC 59 14215623 14217391 GGAACCAGATCTGTACTCGAG 60 NA Rattus norvegicus 81 Isx ENSRNOG00000039808 ENSRNOT00000061079 3 1 1 91 19 14215553 14215571 TTCCACTTCACCCACTACC 59 14215625 14217392 TGGAACCAGATCTGTACTCG 59 NA Rattus norvegicus 81 Dapl1 ENSRNOG00000005743 ENSRNOT00000007632 1 1 1 128 3 45539344 45539362 GTTACAACTGGCACTCAGC 59 45539454 45548546 ATCCCTCCAGCTTTCACTG 59 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000065801 3 1 2 80 13 74456763 74462020 TTTCAACACCAAAGACGCT 58 74462061 74462082 TAGGAAGAGTACCACACTTAGG 59 NA InUTR Rattus norvegicus 81 Maf1 ENSRNOG00000013514 ENSRNOT00000018240 1 1 1 80 7 117419601 117419702 GTGACATCTACAGCTATAACCC 58 117419740 117419761 AGAAGTAGTTGAATGACCAGAG 58 NA Rattus norvegicus 81 LOC681380 ENSRNOG00000048796 ENSRNOT00000043416 2 1 1 80 1 24924844 24924863 CTAGAGTGAAGGAATCTGGC 58 24923749 24924801 TCCCAGGGTTAAACATTCC 57 NA Rattus norvegicus 81 Kif6 ENSRNOG00000011453 ENSRNOT00000015584 2 1 1 80 9 13248272 13248293 TACAATGAATGTGGCTATGACC 59 13232965 13248233 CAATATTGTCACTTTCGGCAG 58 NA Rattus norvegicus 81 LOC691485 ENSRNOG00000013097 ENSRNOT00000017504 2 1 1 129 6 137068576 137068594 GTAGATGAGGTCTGCAGCT 59 137068687 137070505 CTTCCTGTCGTCATCCCTC 60 NA InUTR Rattus norvegicus 81 Testin ENSRNOG00000018028 ENSRNOT00000024467 2 1 1 84 17 4223840 4224486 TACGGTAGTGGCATCTATTATGAG 60 4224529 4224547 CTTCAAAGCCATAGCCGAC 59 NA Rattus norvegicus 81 Slc35b2 ENSRNOG00000019900 ENSRNOT00000026929 3 1 1 80 9 17825947 17825965 GACAGAGACAGCAGAATCC 58 17824776 17825903 AGATAGGACACCTGGAGTC 58 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 1 3 3 81 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942060 144943891 CATTCTCCATGGAAACTGGAC 59 NA Rattus norvegicus 81 Ndufb8 ENSRNOG00000014078 ENSRNOT00000019039 2 1 1 82 1 264301090 264301899 GTGAACCGATACACTGGGA 59 264301026 264301044 CATGACATCCCAGGAAACC 58 NA Rattus norvegicus 81 Olr1381 ENSRNOG00000047511 ENSRNOT00000049390 1 1 1 60 10 12235540 12235558 CTCCTGAAACTCTCCTGCT 59 12235498 12235522 CTCCCTCTGTATTAATCATCAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmp15 ENSRNOG00000002984 ENSRNOT00000003989 1 1 1 80 X 17017389 17021030 CTTCTCAGAGGTCCTTGGC 60 17021072 17021092 GGCTCTGATTAGTTGGTATGC 59 NA Rattus norvegicus 81 Slc29a1 ENSRNOG00000019752 ENSRNOT00000026831 1 1 1 80 9 17793347 17793366 TCTGGCTCATCTTCTTTGTC 58 17793408 17793539 TTGTGAAATACTGGGTTGCT 58 NA Rattus norvegicus 81 Ghsr ENSRNOG00000024119 ENSRNOT00000034960 2 1 1 115 2 113067664 113069709 GAAGATGCTTGCTGTGGTG 60 113069788 113069806 TGATCTGAGCGATCTCCAG 59 NA Rattus norvegicus 81 Pgrmc2 ENSRNOG00000014051 ENSRNOT00000018796 2 1 1 63 2 128001623 128001641 AAAGTCTTCGACGTGACCA 59 127989031 127989049 CAAAGATGCCATATGGGCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910708 ENSRNOG00000027433 ENSRNOT00000013133 3 1 1 92 4 62028074 62028096 TTCTGATCCGGTTCCATATAGAG 59 62028145 62028704 AGTCAAAGACCTGAATGTTCTC 58 NA Rattus norvegicus 81 Mir3586 ENSRNOG00000035457 ENSRNOT00000053580 1 1 1 60 7 114485556 114485575 AGTATGACGATCCCTGTCCT 60 114485596 114485616 CAGTCTAGTATGTCTCCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nqo2 ENSRNOG00000017820 ENSRNOT00000024141 2 1 1 80 17 32137461 32152259 GAAACGATGTTACTGGTGCC 60 32137400 32137423 CTTTCTTCTTGTAGGCTTCATAGG 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000010482,ENSRNOT00000079769 1 4 4 80 14 80071134 80071779 GCAGGAAGAAGACAACGTG 59 80071072 80071091 GAGACTGACTGTCCAAGTCC 60 NA Rattus norvegicus 81 Olr1273 ENSRNOG00000046225 ENSRNOT00000073329 3 1 1 60 2 115225684 115225704 GTTTCTTGTACACAGTGATGG 57 115225723 115225744 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tenm2 ENSRNOG00000027341 ENSRNOT00000011922 1 1 1 80 10 20903412 20903432 CACATTCATCTGGGACAAGAC 59 20900135 20903373 TCAAATCCAACAGACACAACAG 60 NA Rattus norvegicus 81 Vamp1 ENSRNOG00000019219 ENSRNOT00000025081 3 1 1 68 4 157730118 157730136 GATTACAGCAAACCCAGGC 59 157730366 157730384 AGACCTTGTCCACATTCAC 57 NA DesignNoJunction Rattus norvegicus 81 LOC690326 ENSRNOG00000024508 ENSRNOT00000034403 3 1 1 81 4 165732692 165732710 GCCTCCAGGATTCTTCTGG 60 165732753 165734092 TTTCATCATCTTCATTGGCCC 59 NA Rattus norvegicus 81 Vps28 ENSRNOG00000014633 ENSRNOT00000019707 2 1 1 82 7 117685711 117686318 CCCAATGAGTACACTGCAG 58 117685647 117685665 CTGATCTCTGAGCCTTGGA 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 2 3 3 83 X 15755724 15755745 AGGACACTCAATGAAATCTACC 58 15755517 15755680 GATGGCATTCTTCCAGGTG 59 NA Rattus norvegicus 81 LOC100125362 ENSRNOG00000025463 ENSRNOT00000028972 3 1 1 64 8 57255145 57255163 GCTTCTTCTCTGCAACTGG 59 57254054 57254075 CTTTGATCTTGTTTCCTTTCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dmp1 ENSRNOG00000002167 ENSRNOT00000061224 3 1 1 132 14 6896780 6896798 CTCCTTACGTTCCTCTGGG 59 6892316 6894170 GGTCACTATTTGCCATGGG 59 NA Rattus norvegicus 81 Adamts5 ENSRNOG00000057794 ENSRNOT00000085444 1 1 1 80 11 25455587 25455606 ACAACCAGCTAGGTGATGAC 60 25442740 25455547 AATGATGCCCACATAAATCCTC 59 NA Rattus norvegicus 81 Adamts5 ENSRNOG00000057794 ENSRNOT00000085444 2 1 1 80 11 25419100 25419119 GTGGGAAAGGAAGAATCTGC 59 25417818 25419057 TTCCATGGCTTGATGTCGA 59 NA Rattus norvegicus 81 Rn60_1_1730.1 ENSRNOG00000051149 ENSRNOT00000076834 2 1 1 60 1 166728081 166728101 TAGAGTTCACACTTCAAGCTG 58 166728122 166728141 CCACGTAGGTTAAGATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a13 ENSRNOG00000056476 ENSRNOT00000078303 3 1 1 80 8 127887017 127887252 CTCATAGCTGTCTGGTTTGTG 59 127886957 127886977 GTAGATGTCCAGACCAAAGTC 58 NA Rattus norvegicus 81 Dmap1 ENSRNOG00000019407 ENSRNOT00000026336 2 1 1 80 5 136535833 136540404 CAGGTTCAATAAGACAGTACAGG 59 136535775 136535794 TTAGTCCATGCATCATCGTG 58 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366,ENSRNOT00000078044,ENSRNOT00000084602 3 3 3 80 6 3340527 3343341 GATATAAAGGGCGCTAACATCC 59 3338962 3338981 TGTTATCTGTGCGGAAACTC 58 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 1 1 2 119 16 85305322 85305427 GAGTCAAACTCCCAACACC 58 85280726 85280745 GAAGCCATGGAACAAATGTG 58 NA Rattus norvegicus 81 Trim24 ENSRNOG00000013251 ENSRNOT00000047954 3 1 1 80 4 65663255 65663273 AGTGTGGAGAAGGAAGCAG 59 65663313 65678804 GCAATAGCTATTACTAGCCTCTC 59 NA Rattus norvegicus 81 Nphp1 ENSRNOG00000015756 ENSRNOT00000067727 2 1 1 80 3 120341038 120341056 CCCAGGAACAAGCATACAG 58 120335672 120340997 TGAATATTACTCAGGACCTTGC 58 NA Rattus norvegicus 81 Wnt3 ENSRNOG00000003845 ENSRNOT00000005176 1 1 1 120 10 91830820 91864994 TACCCAATTTGGTGGTCCC 60 91865078 91865096 TGTAATTGCGGCAGAAACG 60 NA Rattus norvegicus 81 LOC100909936 ENSRNOG00000046925 ENSRNOT00000042551 3 1 1 86 14 514032 514801 GAATCAAGTCCTAGGGTGC 58 514850 514869 AGGGAATCCAAGTCTTTCTG 57 NA Rattus norvegicus 81 LOC102551069 ENSRNOG00000040063 ENSRNOT00000061605 3 1 1 120 11 28940551 28940611 GGCTATGGCTATGGAGGTC 59 28940449 28940468 CATATCTAGAGCCACAGCCA 59 NA Rattus norvegicus 81 Il17f ENSRNOG00000012509 ENSRNOT00000016717 2 1 1 80 9 26886546 26887925 ATGGGATTACAATATCACCCGA 59 26886487 26886505 ATACAGCCTGAGTGTCTGC 60 NA Rattus norvegicus 81 Renbp ENSRNOG00000054765 ENSRNOT00000083442 3 1 1 80 X 156854611 156854818 CCTAGTGTTACAGGACATGGA 59 156854859 156854878 ACAGAATCGAGCTCTTGTCC 60 NA Rattus norvegicus 81 AABR07059632.1 ENSRNOG00000033874 ENSRNOT00000047419 2 1 1 81 4 28246278 28246925 TAACTTCTGTCGCAACCTG 58 28246215 28246233 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 1 1 2 117 16 81231348 81233291 GATATCAAGAGTGCATGAGGA 57 81226495 81226513 GTGCCCTTCTTATCACAGG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020,ENSRNOT00000079072 2 2 2 80 1 185879049 185902392 TCTCAGCAAAGAATGGAGTC 58 185902434 185902453 CTTATGTGGTGAGGTAGACG 58 NA Rattus norvegicus 81 Arhgap39 ENSRNOG00000016566 ENSRNOT00000052227 3 1 1 80 7 117800337 117800358 CAAGTTCCACTCCTACCTAGAG 59 117795471 117800299 TTTATGTGCTGTGTCACTTTGG 60 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 2 3 3 80 20 5110644 5111498 TGGAACCTGATGAAGAGCTG 60 5110583 5110602 TCAACCCATAGAGCATCTCG 59 NA Rattus norvegicus 81 Kif13a ENSRNOG00000001455 ENSRNOT00000066447 2 1 1 80 17 18294735 18296799 GACATTACACGACAGGTGG 58 18296841 18296861 TCTCCTAGCTCATTCAGTTCC 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 2 2 2 80 9 27409664 27412164 CCTATGAGAAGGTGTTGAAGAG 58 27412205 27412223 CAACCAGGGAAACATCAGC 59 NA Rattus norvegicus 81 Ryk ENSRNOG00000008593 ENSRNOT00000067203 2 1 1 80 8 111382979 111382998 CCAAGCTTCTGAAGTTCAGG 59 111383041 111388031 GGAAGGAGGTTTCTGTGGT 59 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741,ENSRNOT00000002881 3 2 2 80 11 30388734 30390647 AATCCATAAAGATTGCCTGGG 59 30388674 30388694 TAACACCAAGTTCAACATCCC 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 3 2 2 102 1 87928654 87929975 GAGACCTGACTGACAACCA 59 87928570 87928588 TTAATGCTCTCCTCCTGGC 59 NA Rattus norvegicus 81 Eppin ENSRNOG00000028908 ENSRNOT00000019829 2 1 1 98 3 161048719 161048737 CCTTTGTACCAGGGACAGG 60 161045051 161048659 AGGCTGCAAATATCTTGTTGG 59 NA Rattus norvegicus 81 Plxna4a ENSRNOG00000013072 ENSRNOT00000017536 3 1 1 80 4 59476759 59477528 CAAGTTCCTCAAGGAGTGTG 59 59476698 59476718 ATAGGACCTTTCTCCATCTGC 59 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000076651 3 1 2 90 20 5107636 5107654 CGATAGGCTGCATTTCTGG 59 5107308 5107588 CGAACCTTAACATTCTGATAGATGG 60 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437,ENSRNOT00000032792 3 2 2 80 8 94529687 94529710 CAGTATTTGGCCTCTAGAAATACG 60 94528569 94529650 GGACATATCATAACCGTGGGA 60 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387,ENSRNOT00000082422 3 2 2 87 13 83865727 83865745 AAATCACCATCCAGCACCA 60 83863677 83865677 CAAAGGCTAAATTGGCCTGG 60 NA Rattus norvegicus 81 Uba3 ENSRNOG00000006221 ENSRNOT00000008893 1 1 1 80 4 129565900 129567407 GAACCGAGCACTGAATCAC 59 129565838 129565856 CTCACATCCTAAGCCACCA 59 NA Rattus norvegicus 81 Zcchc7 ENSRNOG00000013078 ENSRNOT00000017707 2 1 1 80 5 60405569 60424049 TATCACCTAACGACCAAACCT 59 60424090 60424109 GTTGTAGCAATACACCAGCG 60 NA Rattus norvegicus 81 Olr1416 ENSRNOG00000046967 ENSRNOT00000052223 1 1 1 60 10 43946947 43946966 TGTGAGGTTCTTACTGTGAC 57 43946906 43946924 TGAAGGTCTCATAGAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf8 ENSRNOG00000002708 ENSRNOT00000045708 2 1 1 80 X 21093360 21093382 TACTATTACAGTGGGAAGAGGGA 60 21093420 21094892 CACAAGGTTTGAAAGTCTGGT 59 NA Rattus norvegicus 81 Vps37a ENSRNOG00000012001 ENSRNOT00000016321 1 1 1 81 16 54869657 54871605 GAATCTTCAGCATCGATTAACC 58 54869597 54869618 GTTCTGAAAGTTCTGGAAATGC 59 NA Rattus norvegicus 81 Abat ENSRNOG00000002636 ENSRNOT00000003633 3 1 1 80 10 7137864 7137882 GCCTTCTTGTTGACTACCC 58 7130679 7137821 GATGTATCTGGATCCAGGTG 57 NA Rattus norvegicus 81 Ccdc36 ENSRNOG00000048919 ENSRNOT00000071189 1 1 1 80 8 117190146 117190165 AGTCTGAGGAACATCTCAGC 59 117185314 117190105 CAGTCTCTTGAAAGGTCTTGG 59 NA Rattus norvegicus 81 Ccdc36 ENSRNOG00000048919 ENSRNOT00000071189 3 1 1 80 8 117190145 117190163 TCTGAGGAACATCTCAGCT 58 117185312 117190101 CGCAGTCTCTTGAAAGGTC 59 NA Rattus norvegicus 81 Exosc6 ENSRNOG00000018582 ENSRNOT00000025179 1 1 1 120 19 43191777 43191795 CTACCCTCGTGCTCAACTC 60 43191675 43191693 ATCGTACATCTCCACTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcta ENSRNOG00000048237 ENSRNOT00000075241 2 1 1 93 8 117081468 117081813 GTATCACCGTCCAGGTCTG 60 117080345 117080363 GAGAGCTTCATTTGCTGCC 60 NA Rattus norvegicus 81 Hmg1l1 ENSRNOG00000051482 ENSRNOT00000086591 3 1 1 60 19 59985021 59985040 ATCCTGGCTTATCCATTGGT 59 59984980 59984999 GCAGTGTTGTTCCACATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thap4 ENSRNOG00000018351 ENSRNOT00000024794 3 1 1 81 9 100853876 100854834 CAGAACACAGGTGTTGTGG 59 100853813 100853831 TCCTGGAGATGGAATGGGA 60 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678,ENSRNOT00000016205 2 2 2 80 7 143792699 143792718 AGGAGGTGCTGAAGAAACTC 60 143792233 143792657 TAGAGATGGAACCACCAGGA 60 NA Rattus norvegicus 81 AABR07067339.1 ENSRNOG00000022456 ENSRNOT00000037392 1 1 1 85 9 40817839 40817882 CCAAATACACAGCCTTCCAG 59 40817930 40817948 CTCCATTGGAACTGCTCAC 59 NA Rattus norvegicus 81 Slc8b1 ENSRNOG00000001383 ENSRNOT00000038736 2 1 1 80 12 41578903 41578921 TCATCATCTGCACTTGGGT 59 41576901 41578859 TCAGTAGCTCTGGTGTCTC 58 NA Rattus norvegicus 81 Rn60_10_0700.7 ENSRNOG00000051259 ENSRNOT00000076413 2 1 1 60 10 71112671 71112691 CTTAAACAGCAACTCCCACTC 59 71112631 71112650 GTCATTGAGAGCAATGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyx1c1 ENSRNOG00000056654 ENSRNOT00000085959 1 1 1 80 8 79648429 79648448 CTGTATTTGAATCGGGCTGC 60 79648488 79650725 TTCTAGTGCCTTAGAAGAGTCC 59 NA Rattus norvegicus 81 Wisp2 ENSRNOG00000010666 ENSRNOT00000014346 2 1 1 84 3 160212100 160215426 TGTGTCTCTTGGATGAGGA 58 160215472 160215492 CTGCAATTGGGTTTAAAGGTC 58 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 1 3 3 80 1 135813268 135818693 TCATCATCCTCATCAGGACAG 59 135813208 135813226 CCAACAAACGAAGGAGCAG 60 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 2 3 3 80 1 135836244 135836262 TACGTCTCCTTCCTCTTCC 58 135834659 135836200 ACGTGCTGAATTGTTTCCA 58 NA Rattus norvegicus 81 Ppap2b ENSRNOG00000008116 ENSRNOT00000011237 2 1 1 80 5 124751513 124751531 TACAAACACCATCCTAGCG 57 124751574 124763664 AGACACGAAGAACACTATGC 58 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000017096,ENSRNOT00000016801 1 2 2 80 7 143845719 143846355 CAAGGAAGCTGTAAGGAATGAC 59 143845660 143845680 CTCAGTTCGTAGTTGTCTGGT 60 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 2 2 3 80 20 5118417 5118572 GGATGTGGTCTTGACTGAC 58 5118613 5118634 TCCTACTCTGAATTCAGAAAGG 57 NA InUTR Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677,ENSRNOT00000066637 1 2 2 80 10 87245366 87245385 GAAACGAGCTGATGGAACTG 59 87244357 87245324 AGGATTGTTTCATAGCCGTG 58 NA Rattus norvegicus 81 Hes7 ENSRNOG00000007391 ENSRNOT00000009757 3 1 1 82 10 55708172 55708190 CCTAGAAGAGCTGAGGCTG 59 55708783 55708803 GTATCTCTGCTTTCTCCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC102551744 ENSRNOG00000033125 ENSRNOT00000045349 2 1 1 60 6 3375550 3375570 TGGCACTGAGGATTATATCCA 59 3375592 3375610 TGTAAGGGTCTTCCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo1a ENSRNOG00000004177 ENSRNOT00000005575 2 1 1 80 7 71018444 71018627 GCATCTGAGTGAGATGTCG 58 71018671 71018689 TTTGTCAGCAGTTCAACCA 58 NA Rattus norvegicus 81 Nup93 ENSRNOG00000018564 ENSRNOT00000025086 3 1 1 80 19 11169264 11169282 CTACACCCGCAAGTTTGAG 59 11169080 11169222 TGACTGTCTTTCTCATCCCTG 60 NA Rattus norvegicus 81 Zyx ENSRNOG00000017354 ENSRNOT00000023537 3 1 1 83 4 71741898 71741916 GACCTGGAGATCGACTCTC 59 71741963 71742091 ATATCCAGATGACACCCGG 59 NA Rattus norvegicus 81 Hs6st1 ENSRNOG00000014516 ENSRNOT00000019966 1 1 1 80 9 42620285 42620303 AACTCACCAACTGTGTTCC 58 42620344 42656275 TGATGTAGTAGAACTTTCTGGG 57 NA Rattus norvegicus 81 Prtg ENSRNOG00000055251 ENSRNOT00000091722 2 1 1 80 8 79532921 79532941 CATCAGACAGTTGTGCTAGAG 59 79532983 79533258 GGACTTGTGATCAAGACGG 58 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 3 2 2 80 7 2695956 2696366 CTCAATCACAAGAAGACATCG 57 2696408 2696426 CAGTTCATTGGCTGTTGTC 57 NA Rattus norvegicus 81 Nkx6-1 ENSRNOG00000002149 ENSRNOT00000002928 2 1 1 81 14 9558402 9558420 AAGTACTTGGCAGGACCAG 59 9558465 9560632 TCTGGAACCAGACCTTGAC 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 3 3 3 101 4 149972344 149976983 TCTGTGGTGGTTCTTTAAGCT 60 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000017254 1 1 2 113 2 207272117 207272135 TTCTGAGTCTTGCCTCTCC 59 207272212 207275333 GTGGCCATGACTGAAATCC 59 NA InUTR Rattus norvegicus 81 Plcz1 ENSRNOG00000008514 ENSRNOT00000011376 2 1 1 80 4 174139485 174139503 CAAGTTCACGAGAGCAGAC 59 174137804 174139442 AAATTCAAGGCCACCATCTG 59 NA Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202,ENSRNOT00000085435 2 2 2 80 16 54091837 54092878 GTAGTGGATAATGAGCTGTGG 58 54091777 54091796 AAGTTGCTTCCTTCTCTGTC 58 NA Rattus norvegicus 81 Lat ENSRNOG00000017429 ENSRNOT00000023563 2 1 1 80 1 197769092 197769110 CCTGTTGTCTCCTCTGCTC 60 197766401 197769054 GTAATCTTCACATGACTCCATAGAG 59 NA Rattus norvegicus 81 Ttc12 ENSRNOG00000008595 ENSRNOT00000011454 1 1 1 80 8 53803303 53803321 TTGGCATCTGTGGAGAAGG 60 53802522 53803259 CTCCTTTAGGGCATCTGCT 59 NA Rattus norvegicus 81 Ppargc1a ENSRNOG00000004473 ENSRNOT00000006071 2 1 1 80 14 63182066 63182085 ATGAAACTGACTTCGAGCTG 58 63182125 63186719 CTGAGTTTGAATCTAGGTCTGC 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 2 2 2 60 7 15071207 15072633 GTAGTCAGTTGTTGGAGAAACTC 59 15071169 15071190 AAGATTTCTGCACACTGATGAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC685067 ENSRNOG00000029191 ENSRNOT00000037181 2 1 1 80 2 248237720 248237739 AGTCTCTACCTAGAGGCCAG 60 248237780 248238828 AACATGATTTGCCTTCACTCC 59 NA Rattus norvegicus 81 Cds1 ENSRNOG00000002142 ENSRNOT00000002918 1 1 1 80 14 9429012 9440824 TGTCATCAAGATGGAAGAACTG 59 9428953 9428976 TATAGATGATCAGGAAGAAGAGGG 59 NA Rattus norvegicus 81 RGD1563354 ENSRNOG00000014424 ENSRNOT00000019453 1 1 1 80 3 154692778 154695031 GTTCTTCCAGAAGCTGGAC 58 154692716 154692735 TCAAACTCTTGGATGGAAGC 58 NA Rattus norvegicus 81 St6galnac6 ENSRNOG00000046984 ENSRNOT00000074401 1 1 1 80 3 11630854 11633726 TGAGTAGCAACAAAGAGCA 57 11633770 11633788 TGGAGCTGTAGAGGATGAG 58 NA Rattus norvegicus 81 LOC100359615 ENSRNOG00000049398 ENSRNOT00000072707 1 1 1 60 6 26317513 26317536 CTTGGATTTAGATTACGAACTGGG 60 26317476 26317498 GATTTCTTCCGTGGTACTTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687707 ENSRNOG00000042847 ENSRNOT00000067919 3 1 1 102 10 57240283 57240301 ATCTGACAAGCTGCCTACG 60 57240365 57240478 GGCTGAGATCTCTAACAAGGT 59 NA Rattus norvegicus 81 Cntnap5a ENSRNOG00000029556 ENSRNOT00000046060 1 1 1 80 13 14697767 14771087 TGTTACTGAGGACAAGATTTGG 58 14697708 14697726 TTCTCAGAGTTGGAACCCT 58 NA Rattus norvegicus 81 Cntnap5a ENSRNOG00000029556 ENSRNOT00000046060 2 1 1 80 13 14697777 14771096 GTACTGCAATGTTACTGAGGA 58 14697717 14697735 TTGGAACCCTGTACCTGAG 59 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 1 1 1 60 7 1737911 1737931 AGAATCTGATAGGTGGAGGAG 58 1737858 1737889 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 2 1 1 61 7 1737912 1737932 AAGAATCTGATAGGTGGAGGA 58 1737858 1737889 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 2 2 2 80 1 126964878 126969655 TAGTGGAACTGGGTGATCTG 59 126969911 126969930 TGGTCACAGGGTTTCTTAGG 59 NA Rattus norvegicus 81 Hamp ENSRNOG00000021029 ENSRNOT00000028545 3 1 1 93 1 89369919 89369937 CTAAGCACTCGGATCCAGG 60 89368347 89369863 TAGTCTGTCTCGTCTGTTGC 60 NA Rattus norvegicus 81 Fdx1 ENSRNOG00000012123 ENSRNOT00000016263 2 1 1 102 8 56378351 56386905 GATATCGATGGATTTGGTGCG 60 56378269 56378293 CATCAGTAATGGCATCTAACTTCTC 60 NA Rattus norvegicus 81 Sprr4 ENSRNOG00000042266 ENSRNOT00000066614 1 1 1 60 2 192697631 192697649 AATGTCCAGCAAAGAGCAC 59 192697589 192697607 TCTTGCTGTGCAGTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1389 ENSRNOG00000050601 ENSRNOT00000047454 3 1 1 60 10 34578739 34578757 TCCTCTCCTCTACACAACC 58 34578780 34578799 TGATGAGATAGCCAAAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp275 ENSRNOG00000061073 ENSRNOT00000079860 3 1 1 80 X 157464614 157464632 GTGGCTGAGTCTAAGTCTG 57 157463527 157464570 ACAACAGGAACTCCAATGG 58 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000086766 1 1 2 144 1 264774297 264774315 CAGTTGCAGGATGACTTCG 59 264775290 264775501 CTGTAGCTCCTGATTTCTGAC 58 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000086766 2 1 2 145 1 264774297 264774315 CAGTTGCAGGATGACTTCG 59 264775292 264775502 GCTGTAGCTCCTGATTTCTG 59 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000048843 2 1 2 96 1 264774403 264775290 AGACCAAATGGGAGGTGTG 60 264775350 264775368 TCACTACCCTTCTGGACCA 60 NA Rattus norvegicus 81 AABR07051535.1 ENSRNOG00000049499 ENSRNOT00000073229 1 1 1 89 3 16590283 16590505 TGGGTCTCTGGTACATTTGG 60 16590555 16590575 GCAGCTCATAGTCACTTTCTC 59 NA Rattus norvegicus 81 Blvra ENSRNOG00000011778 ENSRNOT00000015843 3 1 1 80 3 119567320 119572455 CACAGAAAGGGAGAGTCCTG 60 119572496 119572516 CCAACACTTCTCTTCTCAGGA 60 NA Rattus norvegicus 81 Mrap ENSRNOG00000021524 ENSRNOT00000036027 1 1 1 80 11 30904902 30912725 TGAAAGCCAACAAGCACTC 59 30912768 30912787 GCAGAATGAAGAAGAGGAGC 59 NA Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000090726 2 1 2 88 16 23972362 23974993 TACTACAGGGAGCCATGGA 59 23972292 23972311 AGTTAATGTGGCCAAGTCCA 60 NA InUTR Rattus norvegicus 81 Zfp212 ENSRNOG00000006711 ENSRNOT00000009054 3 1 1 105 4 77598708 77598726 TCTCAGAACAGGAGTGGGA 60 77598795 77600596 TGGCCAAGGACCTTTAGAG 59 NA Rattus norvegicus 81 RGD1565862 ENSRNOG00000015005 ENSRNOT00000042670 3 1 1 81 X 18081604 18081811 CTGGTCAGAAGAGGCAGAG 60 18081541 18081562 TTCCACTCATGAGAAATTCTGC 59 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479,ENSRNOT00000051402 3 2 2 82 1 129771005 129773043 CTGTAATGGAGAAGCTATCCCT 59 129770944 129770963 GGAATATGGCTGCCTTAGGA 59 NA Rattus norvegicus 81 Actr5 ENSRNOG00000023989 ENSRNOT00000032943 3 1 1 84 3 155128767 155129352 CTGGACAGGTACCCAAAGG 60 155129400 155129418 TCATGCCTGGGTACATCAC 60 NA Rattus norvegicus 81 Bcap31 ENSRNOG00000055756 ENSRNOT00000091792 1 1 1 80 X 157098407 157104530 GCTGTTGGTCATTGATGCT 59 157104574 157104592 CCTGGATTGTTCTGGAGGT 59 NA Rattus norvegicus 81 Crim1 ENSRNOG00000004208 ENSRNOT00000005983 3 1 1 80 6 956481 958967 TCCCTAGAGATATGGGTCAC 57 959008 959028 AGTCCAATGATGAGTCTTCAC 58 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 2 3 3 80 7 68512166 68512184 TTCAAGACCACCTCCAGTC 59 68453071 68512122 ACTACTGATGGGACCTCCT 59 NA Rattus norvegicus 81 RGD1306954 ENSRNOG00000021399 ENSRNOT00000030279 3 1 1 80 11 31099424 31103251 TCTGCACAGAGATAGAGGAG 58 31099363 31099381 CAATCTGCTCGTCAGTCAG 58 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829,ENSRNOT00000015718 3 2 2 80 19 17024114 17024132 TCGAGGAGCTTGAAGACAC 60 17016138 17024071 GATATTTCAGCTGCCACTGC 60 NA Rattus norvegicus 81 Glyatl3 ENSRNOG00000050990 ENSRNOT00000074110 3 1 1 80 9 23379269 23380415 TCACTCAAGGTGTATGGAGC 60 23380457 23380476 TGGCCATGAATCCAATACCA 60 NA Rattus norvegicus 81 Olfml2b ENSRNOG00000003018 ENSRNOT00000004117 1 1 1 80 13 89030895 89031420 AACTTCAAACAAGGTCGCTG 59 89031462 89031481 GCCATTGTACACCACATGTC 60 NA Rattus norvegicus 81 Ubn2 ENSRNOG00000005564 ENSRNOT00000064175 3 1 1 80 4 66200630 66207503 CTTCTAGACATCGAGTTACAGC 59 66207543 66207562 CACAAATGCTTCAAGATGGG 58 NA Rattus norvegicus 81 Ndufa7 ENSRNOG00000006939 ENSRNOT00000009425 3 1 1 102 7 18688599 18688618 ACTACTGTACTCGTGATGGC 59 18688683 18696131 ACAGCAGAACTCTCAGCTG 60 NA Rattus norvegicus 81 Prss33 ENSRNOG00000029279 ENSRNOT00000034380 1 1 1 127 10 13174489 13174730 CTTAGCCCAGGAGTACCAC 59 13174380 13174398 ACTATGCGCTCACTCTTGG 60 NA Rattus norvegicus 81 Neurl3 ENSRNOG00000015366 ENSRNOT00000038610 1 1 1 84 9 42835567 42835585 GAAAGCCATTGAGCTGCTG 60 42832304 42835000 TCCTGATGTGACTTCAGACTC 59 NA Rattus norvegicus 81 Oat ENSRNOG00000016807 ENSRNOT00000022628 3 1 1 80 1 204563161 204564760 AACCAAAGATTGTGACGCT 58 204563099 204563117 ATATCACCATGGGTTGGCT 59 NA Rattus norvegicus 81 Inca1 ENSRNOG00000037418 ENSRNOT00000056620 1 1 1 80 10 57312225 57312243 CAGAAGAGCAGACCAATGC 59 57311961 57312183 CATCCAGTTGGAGTTAGACCT 59 NA Rattus norvegicus 81 Foxd1 ENSRNOG00000043332 ENSRNOT00000066819 2 1 1 61 2 28460471 28460489 CGAGGAGACAGACATCGAC 60 28460514 28460532 CATCGTCCTCTTCCTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 2 2 2 80 9 100305606 100305626 TGTCCTCAAAGATCTTCTGGT 59 100302242 100305564 GCAGCATTCAGTGAACCTG 60 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 3 3 3 80 2 27025435 27025454 GGCTATCATGGGAGTTTCTC 58 27025497 27028429 TGAGGAATGGTTTGCACTG 58 NA Rattus norvegicus 81 Pgam1 ENSRNOG00000050585 ENSRNOT00000071965 1 1 1 81 1 261163975 261164764 CATCTGGAGGGTCTGTCAG 59 261164807 261164827 TCTTGTCCAGTTCATAGACGA 59 NA Rattus norvegicus 81 Tmem74 ENSRNOG00000005114 ENSRNOT00000006791 2 1 1 60 7 82686749 82686769 AACAGAGAAGTCAGAGGTCAC 60 82686709 82686727 CATCCAAGATCTCCAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aipl1 ENSRNOG00000007889 ENSRNOT00000010533 2 1 1 80 10 58608826 58608846 GGTGTCAAGAAGACCATTCTG 59 58608200 58608786 GAAATGAAAGGTCACTCTGGA 58 NA Rattus norvegicus 81 Cwf19l1 ENSRNOG00000012763 ENSRNOT00000017202 1 1 1 80 1 263908544 263909289 GAACTTTGATCTGCTGTTGTG 58 263908484 263908502 CTGCCAGTCCTATACTCCT 58 NA Rattus norvegicus 81 RGD1561998 ENSRNOG00000048440 ENSRNOT00000074805 1 1 1 80 2 149857499 149857521 AGATACGCTCCTATGATTACCTG 59 149857560 149865550 CAAGCCTGTAGTCTAGTCCC 59 NA Rattus norvegicus 81 RGD1561998 ENSRNOG00000048440 ENSRNOT00000074805 3 1 1 80 2 149855920 149855938 TCTGAAAGACAGCGACCAG 60 149855980 149857515 ATCATAGGAGCGTATCTTGCA 59 NA Rattus norvegicus 81 Adcy7 ENSRNOG00000014776 ENSRNOT00000020700 3 1 1 80 19 19718323 19719579 ATATGTGAGGCCATTAAGCAG 58 19718263 19718282 GACATTCCCAGAGTGAATGC 59 NA Rattus norvegicus 81 Cnot7 ENSRNOG00000012263 ENSRNOT00000016882 2 1 1 80 16 54903415 54903435 AATGAGCAAGGAGAATACCCT 59 54903477 54910009 AGCATACATGTCCTCCGTC 59 NA Rattus norvegicus 81 Gart ENSRNOG00000028292 ENSRNOT00000032162 2 1 1 80 11 31782729 31782750 TTCTTGTCATCTCCAACAAAGC 60 31782381 31782689 GATTAATCACCCTGGTGGGA 59 NA Rattus norvegicus 81 LOC100911224 ENSRNOG00000046455 ENSRNOT00000072367 3 1 1 86 1 68265760 68265781 TTCTTGATGAGACTCAGAAGCT 59 68263814 68265713 TTCTATGCCCACAACCCTG 60 NA Rattus norvegicus 81 Mterfd3 ENSRNOG00000006978 ENSRNOT00000009135 1 1 1 89 7 24640130 24646897 GACTGTAAGGCACAGTGTG 59 24646950 24646968 TATCCTGTCAGCAACCTCC 59 NA InUTR Rattus norvegicus 81 Jph2 ENSRNOG00000008170 ENSRNOT00000010939 1 1 1 160 3 159754058 159754076 CAGAAGGCTGAGATTGCTG 59 159713798 159715484 TTCTGATACTCCGGACCTG 58 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932,ENSRNOT00000082892 3 3 3 80 8 128177978 128178899 CTCCAGAGGGTATGAGGAG 58 128177916 128177934 CCGAAGATGATGAAGACGA 57 NA Rattus norvegicus 81 Setmar ENSRNOG00000006806 ENSRNOT00000008892 2 1 1 80 4 140092550 140103137 CTAAACCTTTCCAGTATACTCCTG 59 140103174 140103194 AACCAGGGAAGGTTATTTGTG 59 NA Rattus norvegicus 81 RGD1309110 ENSRNOG00000017574 ENSRNOT00000055960 2 1 1 80 2 209001337 209001854 TCAACTTGACTCTGCCTACC 60 209001276 209001297 AGCTTCATACCTCTCACATCTG 60 NA Rattus norvegicus 81 Wrb ENSRNOG00000001629 ENSRNOT00000002222 3 1 1 80 11 36497672 36505292 TTGTCCTCGTTTATTTCCAGG 58 36505333 36505352 CTTCATGCTCTGGATCTCTG 58 NA Rattus norvegicus 81 Emilin2 ENSRNOG00000014837 ENSRNOT00000056272 2 1 1 80 9 119621477 119652565 ATCCGCTCTGGTGTATAGG 58 119621415 119621435 CATCTCCATTCCAACTGTGTC 59 NA Rattus norvegicus 81 Snx25 ENSRNOG00000011116 ENSRNOT00000014828 1 1 1 80 16 49430292 49430310 AAGCGAAGCACAAAGTCAG 59 49430353 49431134 AGGCTCTGAAGTGTATCTGG 59 NA Rattus norvegicus 81 AABR07011744.1 ENSRNOG00000061747 ENSRNOT00000089063 1 1 1 131 2 167878151 167892232 TCCCTTTGACAACAGAGGA 58 167878038 167878056 AGTTTCTCCTCAGAGCTGG 59 NA Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 2 1 1 68 3 20457303 20457321 ACAGGTTGAAGATCCTGGA 58 20456967 20457271 CCCTGAATCACTGTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 3 1 1 70 3 20457303 20457323 CTACAGGTTGAAGATCCTGGA 59 20456967 20457271 CCCTGAATCACTGTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Atmin ENSRNOG00000011422 ENSRNOT00000015180 2 1 1 60 19 49496116 49496135 CTCAGCCAACTTGATACCCT 60 49496158 49496176 ACACGATGACACAGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 3 2 2 80 10 89474512 89474769 ATTGAAAGCATCTCCTGATTCC 59 89474809 89474828 TCTTCCTCCGTTTCTTCGAC 60 NA Rattus norvegicus 81 Rbbp9 ENSRNOG00000007972 ENSRNOT00000010678 2 1 1 81 3 138705904 138706876 CATGCCTGACCCAATTACC 59 138705841 138705861 GATGGTCTTCTCATCACAGTG 59 NA Rattus norvegicus 81 RGD1565533 ENSRNOG00000036796 ENSRNOT00000055192 1 1 1 80 10 89922153 89922172 CATCCTAAGGAGGTTGAGTG 57 89922215 89922766 TATCGCCTTGAATTCTGCC 58 NA Rattus norvegicus 81 Kcnc4 ENSRNOG00000060988 ENSRNOT00000086420 1 1 1 80 2 210230112 210230130 ACAGCACCTACAGTGACAC 60 210227868 210230068 CATTCTGCTTGGAGTCTGC 59 NA Rattus norvegicus 81 Fam53a ENSRNOG00000017548 ENSRNOT00000023904 2 1 1 81 14 82397657 82397675 CTCTCATCACGGAGAAGCT 59 82397720 82402618 TCAGCAGAATACGGGACAG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 1 2 2 84 9 15610530 15610548 CTTTGGCCTCAAGAACCTG 59 15610594 15618404 ATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Dram2 ENSRNOG00000017744 ENSRNOT00000023903 1 1 1 80 2 209185579 209186360 ACTTAGCATGATGACTTGCTC 59 209186401 209186420 GGGTTCCAGTGTAGTTTCTG 58 NA Rattus norvegicus 81 Gipc1 ENSRNOG00000003864 ENSRNOT00000005374 1 1 1 80 19 24794675 24794694 GGCTTCACTAATGTCAAGGA 58 24794736 24795446 GGTACAGAACATCACCTCAG 58 NA Rattus norvegicus 81 Vps33a ENSRNOG00000056889 ENSRNOT00000090343 2 1 1 80 12 38474212 38476095 CAAAGACGTCACCACTTCTG 59 38476138 38476156 TTATCGGTGTCTATCCCGG 58 NA Rattus norvegicus 81 Suv420h1 ENSRNOG00000016790 ENSRNOT00000022486 2 1 1 80 1 219036923 219039107 TTACACTTGCGAAAGACGG 59 219039148 219039169 TTGCTATTGATAACAGGAGCAG 59 NA Rattus norvegicus 81 Arl4d ENSRNOG00000020770 ENSRNOT00000028178 1 1 1 134 10 89578279 89579072 CTGACTGAAGACAACCCAG 58 89579170 89579188 TTTCAGTCAAGTGGTTCCC 58 NA InUTR Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 3 3 3 92 9 44491486 44491506 TGAAGAAAGGTGCAGAATCTC 58 44491554 44493588 GTCTAGGCTGAAATACTTTATCTGG 59 NA Rattus norvegicus 81 Zfp423 ENSRNOG00000014658 ENSRNOT00000020028 1 1 1 83 19 20285811 20285829 GACCACCGTGATCTTACCC 60 20285876 20292392 CTGGTACGTCTTCTTCCGG 60 NA Rattus norvegicus 81 B3gat2 ENSRNOG00000046852 ENSRNOT00000075592 3 1 1 80 9 29985302 30040408 TCCAGGAGGTTACTTCCAC 58 30040457 30040475 CCAATGGACGTTCATAGCG 59 NA Rattus norvegicus 81 Ccnb3 ENSRNOG00000002951 ENSRNOT00000003954 3 1 1 80 X 16395315 16396025 GTAGATATGCTTCGTGCATCC 59 16396067 16396085 ATTCCTGCAGGGTCATCTC 59 NA Rattus norvegicus 81 Hemgn ENSRNOG00000009436 ENSRNOT00000042649 1 1 1 80 5 62016533 62016551 ACCAATCTCATCTGACGCT 59 62012785 62016491 TCCAAGATCCAATGATGTCTG 58 NA Rattus norvegicus 81 Brwd1 ENSRNOG00000001632 ENSRNOT00000002231 1 1 1 80 11 36406930 36410677 ACATCTTTGCAGTTTAGCCC 59 36406869 36406888 AAAGCAAACAGTGCCATCAG 60 NA Rattus norvegicus 81 Mboat4 ENSRNOG00000030102 ENSRNOT00000042003 3 1 1 83 16 61783749 61786146 CCTGTGAGGTTCTACATCAC 58 61783685 61783703 CCCTTCAGAAATGTCCAGG 58 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 2 2 2 87 7 59302484 59302502 ATTTACGGCAAGGTTGAGG 58 59302553 59304080 GACTTCCTCGCTTCAAGAC 58 NA Rattus norvegicus 81 Ftsj3 ENSRNOG00000009857 ENSRNOT00000013295 1 1 1 80 10 94440517 94440535 TATCACTGACACTGGAGGG 58 94440347 94440475 ACTTTCCAATCGTCTTCATCC 59 NA Rattus norvegicus 81 Acat1 ENSRNOG00000007862 ENSRNOT00000010573 3 1 1 80 8 58176087 58178791 CAGTGAAAGGTAAACCAGACG 59 58176027 58176046 TGAGCTTTGGCACTTTACTG 59 NA Rattus norvegicus 81 Gnai3 ENSRNOG00000019465 ENSRNOT00000026710 2 1 1 82 2 210898973 210902285 AGAATACACAGGTTCCAATACG 58 210898912 210898930 TGTCCTTTCTTCGGTTCAG 57 NA Rattus norvegicus 81 Lrrc52 ENSRNOG00000004356 ENSRNOT00000005768 1 1 1 95 13 85672464 85694469 ATATGGACCACCCAGATGC 59 85672387 85672405 TGTACTGGAGTGGATTCCC 58 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 3 3 3 80 8 22427973 22427991 GTCCTTGACCATCCATCTG 58 22428034 22429337 TTGACTGATAGCGTTTCTCC 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558,ENSRNOT00000080934 2 2 2 80 19 24413096 24416302 GAACATCCTACGAGAAATTTGG 58 24416343 24416361 GGATCACTTTCAGCCTCTG 58 NA Rattus norvegicus 81 Tbc1d8 ENSRNOG00000013583 ENSRNOT00000018640 3 1 1 80 9 46095492 46095511 TCTTCAGGCTTCTGGATGAC 60 46095166 46095453 CATTGTACATCACGTCTAGACAG 59 NA Rattus norvegicus 81 Amica1 ENSRNOG00000026702 ENSRNOT00000007588 3 1 1 80 8 49386755 49386774 GAGCACAGAAGAGAAACCTG 59 49386814 49388147 TACAGCACGTATTCATTCTCAG 58 NA Rattus norvegicus 81 Ticrr ENSRNOG00000015520 ENSRNOT00000031783 3 1 1 80 1 141415938 141415956 TGGAGATGTGTCAGCAGTG 60 141416000 141416104 GCAGATCTGTCACCTCCTC 60 NA Rattus norvegicus 81 Dnajb3 ENSRNOG00000023172 ENSRNOT00000025300 3 1 1 60 9 95290234 95290254 AATCACCACCAAGAGAATCGT 60 95290194 95290214 TCCATCTTCTTCCACTTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r54 ENSRNOG00000026094 ENSRNOT00000034654 3 1 1 83 7 16961860 16965910 TCCAATGAGACAGATATGAACC 58 16965954 16965972 TTTCTTGAGGCACTGTCTC 57 NA Rattus norvegicus 81 Olr206 ENSRNOG00000049967 ENSRNOT00000074591 1 1 1 60 2 4801124 4801144 GGTGCTTCCTTCATGTATGTC 59 4801164 4801184 TGATATTGTCTTGTTTGGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr206 ENSRNOG00000049967 ENSRNOT00000074591 3 1 1 60 2 4800581 4800601 CTCACTTCAGTTATCACTCCC 58 4800620 4800641 ATATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC300308 ENSRNOG00000048230 ENSRNOT00000046378 2 1 1 123 7 20263467 20263486 ATTCCTACTCACCTGTCTGG 59 20341537 20412663 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 Znrd1-as1 ENSRNOG00000020166 ENSRNOT00000027299 3 1 1 60 9 18490061 18490080 CAGGTGCAAATCAAAGACCA 59 18490101 18490121 TTTGCTCTATCAGTTCCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 2 1 1 87 3 137632430 137632448 AGCCAGAAGGATTTCAAGG 57 137632358 137632382 TAATAGGTGTAGCCATCTTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1228 ENSRNOG00000049796 ENSRNOT00000074250 2 1 1 60 8 41366741 41366760 TCTTCTATGGATCTGGGCTC 58 41366783 41366801 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk5r2 ENSRNOG00000037793 ENSRNOT00000057368 1 1 1 122 9 82121026 82121044 AAGACCTCAAGAACGAGGG 59 82121130 82121148 TAGTCCAATGCTTGGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk7 ENSRNOG00000018510 ENSRNOT00000025026 1 1 1 80 2 30722688 30722706 GCCTACATGCTGATGACTC 58 30721676 30722646 GTTGTTTGGTTTCAGATCCCT 59 NA Rattus norvegicus 81 LOC499886 ENSRNOG00000037081 ENSRNOT00000055882 3 1 1 80 3 121132443 121132740 GTGACCGACAAGTATCTGCT 60 121132780 121132801 GATCCTGTTGTAGAGATGTCCA 59 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000008944,ENSRNOT00000082469 3 2 2 80 13 90572650 90572669 ATCTTCCTCTGGGAGAAGTC 58 90572710 90576204 CTCAAGACAGTTTACCACACC 59 NA Rattus norvegicus 81 Atxn7l2 ENSRNOG00000028749 ENSRNOT00000037336 2 1 1 80 2 210996616 210996989 CTTGCAAGATCCATTCGGTG 60 210996555 210996573 TCAGTTCAGCCACTAGCAC 60 NA Rattus norvegicus 81 Ptp4a1 ENSRNOG00000011771 ENSRNOT00000016237 2 1 1 81 9 37226381 37226661 ATTCATGTTCTTGACTGGCC 59 37226319 37226340 TCTTCACAAGACTTAACCAGTC 58 NA Rattus norvegicus 81 Ptp4a1 ENSRNOG00000011771 ENSRNOT00000016237 3 1 1 82 9 37226382 37226662 CATTCATGTTCTTGACTGGC 58 37226319 37226340 TCTTCACAAGACTTAACCAGTC 58 NA Rattus norvegicus 81 Lyg1 ENSRNOG00000047233 ENSRNOT00000074343 3 1 1 81 9 44608862 44609553 CTGAGTTACTGTGGAGTCCG 60 44608800 44608819 TCATGGTGGGTTGGTATCTC 59 NA Rattus norvegicus 81 Slc25a32 ENSRNOG00000004403 ENSRNOT00000006029 1 1 1 80 7 77990422 77993253 TTATACAAGGGATTTGTCCCTG 58 77990363 77990384 CAACTTTAGCACTTCATATGCC 58 NA Rattus norvegicus 81 Casq1 ENSRNOG00000006930 ENSRNOT00000009344 2 1 1 80 13 90598614 90599262 GAGTTTCTGCTCGATGTCC 58 90598552 90598571 CTCGATGTTCTCAAATGCCT 58 NA Rattus norvegicus 81 Stxbp3 ENSRNOG00000020392 ENSRNOT00000027666 3 1 1 80 2 211605450 211606564 AGATCTCGAAGCAAGTCGT 59 211605388 211605409 TGCAGAGCTTCTCAATATTCAG 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 2 2 2 80 8 36211821 36227055 CCATAGACATCCAGCATCCA 59 36227097 36227116 GGAACGTGACGATATTGTCC 59 NA Rattus norvegicus 81 Cstl1 ENSRNOG00000004779 ENSRNOT00000006362 2 1 1 82 3 143085247 143085265 CCAGTCTTACAACAACGCA 58 143085311 143088784 CTGTGGTCAACTGCATCTG 59 NA Rattus norvegicus 81 Pmel ENSRNOG00000023085 ENSRNOT00000049972 3 1 1 80 7 3133914 3138246 CTATAGAAGGATCCAGGAATCAG 58 3138285 3138304 GGTACAGCTGCTTATTCCAG 59 NA Rattus norvegicus 81 Btbd16 ENSRNOG00000036675 ENSRNOT00000067742 3 1 1 80 1 201359945 201359964 GTCAGCACGATGTTGAACAG 60 201360006 201361574 CTGCTCTTCCTTGTACTTGC 59 NA Rattus norvegicus 81 RGD1561145 ENSRNOG00000042628 ENSRNOT00000067761 3 1 1 84 16 9042020 9043570 GACTGAGATCGATTTCAAGTACG 59 9043614 9043632 GCAAATCTTCAGGGCAAGG 60 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 2 2 2 80 3 51602783 51602803 AGAAGATTTCACTTTCCTCCG 58 51602012 51602743 ACAAACTCTGTCACATATGCC 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876,ENSRNOT00000057473 2 2 2 80 2 172317731 172317750 CTCCTCATTCGAGATGAGCT 59 172312930 172317688 ACTCTCAGCGTGTCTAGTC 59 NA Rattus norvegicus 81 Ccnb1 ENSRNOG00000058539 ENSRNOT00000082846 3 1 1 80 2 30785007 30785259 ATTGGAGAGGTCGATGTGG 59 30784945 30784963 ATGCACCATGTCGTAGTCC 60 NA Rattus norvegicus 81 Sctr ENSRNOG00000049766 ENSRNOT00000072088 2 1 1 80 13 36074842 36074865 GTACTGCATCATGGTCTACG 58 36074907 36074926 TCTGAGAAGAAGGAGATGGC 59 NA Rattus norvegicus 81 Nfe2 ENSRNOG00000036837 ENSRNOT00000055281 3 1 1 88 7 144875395 144875413 TTACCACAGCTGCCTACTG 59 144873966 144875343 ACATTTAGACCCTGCAGCT 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 1 2 2 86 3 79731719 79731737 GAGGCAATAGACGCTTGGA 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Iqgap2 ENSRNOG00000025406 ENSRNOT00000035017 3 1 1 80 2 26172613 26182539 GGAGCCTCATGATAAAGACCA 60 26172553 26172575 CTAAGATTTCCATCAGTGTGCTC 60 NA Rattus norvegicus 81 Cacnb4 ENSRNOG00000007666 ENSRNOT00000059430 2 1 1 80 3 37978569 37978588 GGTCTGTCCTCAACAATCCT 60 37974181 37978527 CACTCTGTACTTCCGCTAGG 60 NA Rattus norvegicus 81 Zfp87 ENSRNOG00000016462 ENSRNOT00000022527 3 1 1 89 1 37932010 37932028 ATGTCTGGACCTTGCTCAG 59 37931487 37931957 TTACAGGATGCAAGACCCA 59 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000047540 ENSRNOT00000073066 1 1 1 88 1 69246926 69246946 GAGACTGGTATTACCGTTGGT 60 69245436 69246876 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Samt4 ENSRNOG00000024271 ENSRNOT00000029966 2 1 1 68 X 24364227 24364246 TCAAATGGATCTCTTCACCC 57 24362816 24362837 CTCAACTTGAAGATGCATTCCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gns ENSRNOG00000046159 ENSRNOT00000006566 3 1 1 80 7 65628922 65628940 AGTACCAGAAGGCTTTCCC 59 65628983 65631034 TTAACCAGTGCTTGTTCGTC 59 NA Rattus norvegicus 81 Ttc21b ENSRNOG00000005868 ENSRNOT00000007832 1 1 1 80 3 52328422 52329024 CTTAAATGGAGAACAGCACGAG 60 52328363 52328383 CGTAATTCTTCGCAAGTTCCA 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649,ENSRNOT00000016596 2 2 2 80 2 34268220 34268241 AGAAGCTTGTCAAACTAGTCCT 60 34268281 34268830 AGTACTGAGTGCTTGTGACC 60 NA Rattus norvegicus 81 Eri1 ENSRNOG00000011448 ENSRNOT00000015239 2 1 1 80 16 60317459 60317478 AGCAGTATGTGAGACCAGAG 59 60317517 60319426 CTACCTGATCCTGAGTAATTCCA 59 NA Rattus norvegicus 81 RGD1564883 ENSRNOG00000029115 ENSRNOT00000041210 1 1 1 60 7 59762943 59762965 CTCAGGATTACAGTGAAACTGAC 59 59762905 59762923 AGGACACCACCTCAATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfbpl1 ENSRNOG00000011320 ENSRNOT00000015270 3 1 1 80 5 61400252 61400960 ACCTGGAAGAAGGTCAAGC 60 61400190 61400210 GACAGCTATATTGACGTGGTC 59 NA Rattus norvegicus 81 AABR07043115.1 ENSRNOG00000047294 ENSRNOT00000074210 3 1 1 80 19 21965235 21965258 GAGATTTCACCTCACATGCG 59 21965174 21965193 TCCTCTTTCTCCACAACCTC 59 NA Rattus norvegicus 81 LOC257642 ENSRNOG00000048268 ENSRNOT00000071572 2 1 1 91 14 46593808 46593826 GGATCCCTACAACTCGGTG 60 46588773 46588791 AGGTCTCCAAGGTGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223,ENSRNOT00000083659 2 2 2 80 8 32535848 32538619 AAGCTCTTCCGAGATGGAC 59 32538663 32538681 GTACCGCTTGTACTGTGAC 58 NA Rattus norvegicus 81 Olr86 ENSRNOG00000021332 ENSRNOT00000028936 2 1 1 60 1 168379447 168379470 CGATACATCCATATTCTTCTTGCC 60 168379489 168379507 CAGGATTGAGAGCAGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr86 ENSRNOG00000021332 ENSRNOT00000028936 3 1 1 60 1 168379382 168379402 TGCTTTCCTTCTATACACCAG 58 168379424 168379442 ATATTTCGGCCAAATCGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146,ENSRNOT00000005958 3 2 2 80 7 83396246 83403124 GTTTCAAACATATGCAGAGGTC 58 83403162 83403183 CCATGTATTGTCAATATGGTGC 58 NA Rattus norvegicus 81 Msantd1 ENSRNOG00000010867 ENSRNOT00000014692 2 1 1 93 14 81096845 81096863 TACCGTATACCCAGTGCTC 58 81095204 81096790 TCCTCTGACCTGAACTTAAGG 59 NA Rattus norvegicus 81 Pcsk2 ENSRNOG00000005438 ENSRNOT00000007249 2 1 1 80 3 137783743 137833222 CTGGCCTACAACTATAACTCTG 58 137833263 137833281 GTCATCTGTGTATCGAGGG 57 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 1 2 2 80 1 219135375 219135395 TTGGATGACCTTTGTCATCTC 58 219135130 219135333 TGACAGTGAAAGCAGTCTG 58 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770,ENSRNOT00000078931 2 3 3 80 10 89185622 89185641 AAAGTGAAGATGCCAGAGGT 59 89185682 89185781 ATCCTGGATAGTGAACCTCTC 59 NA Rattus norvegicus 81 Bag2 ENSRNOG00000012709 ENSRNOT00000016948 1 1 1 80 9 38464712 38465823 AGATCAGCGATGGAGAAAGAG 60 38465865 38465883 CTGAGACCTCCACAGTGAG 59 NA Rattus norvegicus 81 Acads ENSRNOG00000001177 ENSRNOT00000001556 1 1 1 80 12 47256229 47256247 GACTTTGCTGAGAAGGAGC 59 47256291 47260960 CTTCTTCACCTGCGATGTG 59 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516,ENSRNOT00000061515,ENSRNOT00000061513,ENSRNOT00000084506 2 5 5 80 13 34554485 34560095 AGAAGGATTGTGATATCGTGTC 58 34560135 34560154 CTTCTACCTCACTACCTCCC 58 NA Rattus norvegicus 81 Olr93 ENSRNOG00000047377 ENSRNOT00000021179 3 1 1 60 1 168464231 168464249 ATTCTCCGTGCAGTCTTCC 60 168464189 168464209 AGGTGCCTAGAGCTTTAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 1 2 2 80 7 2558236 2558470 GGAGATATGGGTGGAATGG 57 2558174 2558192 GAGACTGTAAGGAGCTGTG 57 NA Rattus norvegicus 81 Tbc1d10c ENSRNOG00000021510 ENSRNOT00000029237 3 1 1 150 1 219432666 219432960 TCTTCATGTCCCAGGTACAC 59 219432535 219432554 GACTCAAAGATGGCTTGAGC 59 NA Rattus norvegicus 81 Qars ENSRNOG00000060912 ENSRNOT00000082628 3 1 1 80 8 117303017 117303036 ACACTGTCTCTGTGATTCCA 59 117303080 117303374 AAGTAGGAAGACCGTCGAG 59 NA Rattus norvegicus 81 Vnn1 ENSRNOG00000016219 ENSRNOT00000021694 1 1 1 80 1 22621695 22622599 AATCCGGAAAGATTTGGCTC 59 22621634 22621652 CGCCACGACATAGATTGAG 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 3 4 5 83 10 89175110 89175129 TCAACAACGTCAAGCTACAG 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Rad17 ENSRNOG00000018353 ENSRNOT00000024801 1 1 1 80 2 30659815 30662965 CTACAAAGGTAACAGACTGGGT 60 30659756 30659774 ATGAAACGGTGATGGTGGT 60 NA Rattus norvegicus 81 Ube2s ENSRNOG00000016930 ENSRNOT00000022977 2 1 1 81 1 72580550 72581172 GAAGTCATGAACTCCAATGTAGAG 59 72581212 72581230 CTGCTGTCAGTGTTGTCAC 59 NA InUTR Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 2 1 1 61 1 207655049 207655705 GAGATGAGAACGACCCAGG 60 207655728 207655748 CATCTTCTCACAGTTTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 AC133270.1 ENSRNOG00000031651 ENSRNOT00000051584 1 1 1 80 9 44010414 44010435 AAGAGGACAAATTCACCAAGTC 59 44010474 44013442 ATGCTATGAACATTGTGCTCC 59 NA Rattus norvegicus 81 Rnasek ENSRNOG00000018881 ENSRNOT00000025767 2 1 1 106 10 56849247 56849923 TCATGTTGATAATGCTCGGG 58 56848688 56848706 GTATATGTTCTGAGGGCCG 58 NA Rattus norvegicus 81 AABR07010583.1 ENSRNOG00000055814 ENSRNOT00000072748 3 1 1 62 2 141422811 141422832 AGAGTCTAATCAGGAGGTTGC 59 141422856 141422874 CACCTGTTCTGTAGAGGGT 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560398 ENSRNOG00000037566 ENSRNOT00000056932 2 1 1 83 12 47552059 47555513 AGAACCTGGTGTTGATGGG 60 47555559 47555578 GAATGGGCTTGTAGACACAG 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076592 2 1 3 145 1 167337331 167345222 ATGGTTAAGGTCACTACTTCCA 59 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 Fam222a ENSRNOG00000001198 ENSRNOT00000001588 1 1 1 66 12 47767028 47767046 TGACCTGTCCAAGCAAGAG 60 47749411 47749429 GAGGAAGGCATAGAGCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 1 2 2 80 8 109263092 109263112 GGGATCTGTTTGGTAATTGCT 59 109263151 109288092 CTTGTACGACTATCTGTTCTGG 58 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087782 1 1 3 60 20 5231381 5231402 AGCAGTGTGGTAATAGAGATGG 60 5231342 5231360 CTCGTCAGTTCCTTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fdxacb1 ENSRNOG00000010743 ENSRNOT00000065879 1 1 1 80 8 55199247 55199265 TTCAGAGTCAGACTGGAGG 58 55199308 55200019 ATTGATGGTTCTGTTCAGCT 58 NA Rattus norvegicus 81 Bloc1s1 ENSRNOG00000007784 ENSRNOT00000010380 2 1 1 94 7 3342815 3343308 GGCACTTAAGGAAATCGGG 59 3342739 3342758 CTTTGTAGACGTACTCCAGC 58 NA Rattus norvegicus 81 Sgsm1 ENSRNOG00000000708 ENSRNOT00000000898 1 1 1 80 12 49382901 49385008 GGTCTCTGATCCAGATCCT 58 49385052 49385070 AGCAGAAGTAGAAGTGGGT 58 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767,ENSRNOT00000083702,ENSRNOT00000026482 3 3 3 101 1 40903940 40905587 CAGAATCCTAAGATGTTAGTTGCTC 60 40905646 40905664 ATCTTGGTCTCAAGGTCCC 59 NA InUTR Rattus norvegicus 81 Tnfrsf11a ENSRNOG00000015615 ENSRNOT00000021129 1 1 1 80 13 25817584 25817603 TCATCTCTGTGGTAGTGGTG 59 25817646 25820913 ACAGATTAGCTGTCAGCGT 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 2 3 3 61 10 89286248 89286266 CATCAATCTCCTCTGGGTG 57 89286289 89288266 GAATCCACTTAAAGACGAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Bbs12 ENSRNOG00000007510 ENSRNOT00000009898 3 1 1 60 2 124054767 124054786 GGGCTGTTGAAGATTGTCTC 59 124054806 124054827 GACATCACTGACACTATCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055506.1 ENSRNOG00000046725 ENSRNOT00000073906 1 1 1 80 7 4518849 4518867 TTCTTCTGCGATGCATCTC 58 4518910 4518930 TGCACAAATAATCACCAGCT 58 NA Rattus norvegicus 81 Ulk1 ENSRNOG00000037505 ENSRNOT00000056790 1 1 1 80 12 51931550 51931569 GCTTACAGACTGCCATTGAC 59 51931612 51931958 TTAGTCTGCGTACCACCTG 59 NA Rattus norvegicus 81 LOC100362350 ENSRNOG00000002597 ENSRNOT00000003498 3 1 1 80 7 2419041 2419061 AAGAGTTGCATTGTTTGGAGG 60 2415757 2418999 ATCTCACGTCTTAGCACGT 59 NA Rattus norvegicus 81 Fxr1 ENSRNOG00000051480 ENSRNOT00000088442 2 1 1 80 2 120529767 120529791 TACAAGGTTCTAGGTCTTATAGTGG 59 120520590 120529733 CAGAATTTGTACCATAACCGGAG 60 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939,ENSRNOT00000084454 3 2 2 80 1 46203941 46203959 CCTTTCACGGAGATGAGAG 57 46204003 46208538 AAGAGGAGCTGGACTTAGG 58 NA Rattus norvegicus 81 Klhl40 ENSRNOG00000019390 ENSRNOT00000026234 2 1 1 82 8 130418929 130419050 GGCAAAGACAGGAAATGTCTG 60 130419094 130419112 GTCTTCATGGGTGCTAGCT 60 NA Rattus norvegicus 81 Cck ENSRNOG00000019321 ENSRNOT00000026159 2 1 1 92 8 130125942 130127010 CATCCGAAGATATGAAGTGCG 59 130125870 130125888 CTTCTACAGGGACTACCGG 59 NA InUTR Rattus norvegicus 81 Olr950 ENSRNOG00000032325 ENSRNOT00000051053 1 1 1 60 7 7616619 7616640 TTTATACCCTAAGGAACCAGCA 59 7616580 7616598 TACAATCTGCGAAGCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ets1 ENSRNOG00000008941 ENSRNOT00000011925 2 1 1 80 8 33854355 33855296 CTTCATTAGCTATGGTATCGAGC 59 33855334 33855354 TAGGACTCTGTGATGAAGCTG 59 NA Rattus norvegicus 81 Msi2 ENSRNOG00000025338 ENSRNOT00000003164 3 1 1 80 10 76039038 76039059 ACCATGAGTTAGATTCCAAGAC 58 75915317 76034975 TTGTTCTTGTGACCATCTTGG 59 NA Rattus norvegicus 81 Khdc3 ENSRNOG00000054460 ENSRNOT00000079458 1 1 1 80 8 79782133 79782293 GTGGAAATCATGTTTGGAAAGG 59 79782334 79782352 GACGTTCACGTGAATCAGG 59 NA Rattus norvegicus 81 Pramel6 ENSRNOG00000021920 ENSRNOT00000035844 2 1 1 80 3 75561000 75561019 ACCTGGAGACTTTGAAAGCA 60 75561062 75561515 CTCTGAGTTTGCACCTGGA 60 NA Rattus norvegicus 81 RGD1563947 ENSRNOG00000003688 ENSRNOT00000004893 3 1 1 60 X 25737755 25737775 TTGCATGTATTGAAAGCCACC 60 25737796 25737815 GATCTCCAGCATCCATTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osgepl1 ENSRNOG00000004001 ENSRNOT00000005408 1 1 1 80 9 53090077 53090098 AAGAACACATCGTGCTATTCTG 59 53089251 53090039 CCTCCAGACACAACTAATACTG 58 NA Rattus norvegicus 81 Ubqln2 ENSRNOG00000003099 ENSRNOT00000026214 2 1 1 60 X 18725663 18725684 CCATGATGCAAGAGATGATGAG 59 18725624 18725644 GGGATGCTTTCGAGATTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ch25h ENSRNOG00000019141 ENSRNOT00000025856 1 1 1 60 1 252808196 252808214 GTTCGTGGTGCTAGATGTC 58 252808154 252808172 GTGGATCTTGTAGCGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Peak1 ENSRNOG00000042519 ENSRNOT00000068658 3 1 1 84 8 60888861 60901988 CAACTTAGGACAATCTAGAGCAG 59 60888799 60888817 AAAGGCAATGGCATCATCC 59 NA Rattus norvegicus 81 Taco1 ENSRNOG00000008405 ENSRNOT00000063973 2 1 1 80 10 94265601 94265619 TTATCGAACAGTGGTCCCA 58 94267016 94267039 TGCATCTTCAGTCATCATTCC 59 NA Rattus norvegicus 81 LOC100909836 ENSRNOG00000045621 ENSRNOT00000070868 3 1 1 87 12 47031894 47036816 GGAGGACAGATGTCTCTACC 59 47036864 47036884 CACAACGTGATTTGAGTTCTG 58 NA Rattus norvegicus 81 Lyzl4 ENSRNOG00000019350 ENSRNOT00000026173 1 1 1 83 8 130224109 130224127 TTCGGCCTCTTTCAGATCC 60 130222920 130224062 ATTCAGTAAAGCCGTGCAG 59 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 2 2 2 80 14 83911562 83915177 CATTGATGAAGTGATTGTCCC 57 83915218 83915237 GCAAACTTCTCCACATTGTC 58 NA Rattus norvegicus 81 Tcaim ENSRNOG00000004085 ENSRNOT00000005440 3 1 1 81 8 131860540 131860559 TCCTTTACTGGGTTCAAGGA 58 131860603 131865545 TACCTAACCAGGACGTGAG 58 NA Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 2 2 2 80 5 57001656 57001675 AGAAGCTGTTGTGATTGGTC 59 56999846 57001614 GCTTTCAACTGTACTTGCTG 58 NA Rattus norvegicus 81 Cd53 ENSRNOG00000017874 ENSRNOT00000024344 2 1 1 80 2 209506081 209506102 TCCATTATCATGGTAGTTGCCT 59 209502339 209506043 AACAAAGAACGACATAAGCAGG 60 NA Rattus norvegicus 81 LOC100361913 ENSRNOG00000020628 ENSRNOT00000027998 3 1 1 90 1 87191503 87191521 GAGTTTGACTTGGCTGCTG 60 87191312 87191332 CCTTTAGAGGACAGTGTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tgfbr3 ENSRNOG00000002093 ENSRNOT00000002867 2 1 1 80 14 3633776 3633795 ATATGGAGCAGTGACTTCGT 59 3633836 3637901 GGAAACACTTGATCTTCTCCC 59 NA Rattus norvegicus 81 RGD1565459 ENSRNOG00000033613 ENSRNOT00000042056 1 1 1 72 10 97505243 97505261 CAACTACAGCAAGCTGCTG 60 97505189 97505207 GTTGATGTAGACCCGGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236 1 1 2 71 8 117783318 117783336 ATACTGCTGCTCTGACGTG 60 117783371 117789846 AATCTGGACTCTGGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Siglec5 ENSRNOG00000021474 ENSRNOT00000033648 2 1 1 80 1 98569757 98569775 GACTCAACAGCTCAGTGTC 58 98566778 98569548 ACTTTAGTTTCTGTGCCATCTC 59 NA Rattus norvegicus 81 Sirt3 ENSRNOG00000013828 ENSRNOT00000018861 2 1 1 85 1 213626920 213627015 ATCCCAGACTTCAGATCCC 58 213626853 213626871 AGTTCAAAGATGGCCTCAG 57 NA Rattus norvegicus 81 Uts2r ENSRNOG00000036669 ENSRNOT00000054926 3 1 1 60 10 110365017 110365036 CAAGCTTCTTTCAAGCAGAC 58 110365059 110365077 CAAGGATGAGGTAGAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000067414 1 1 2 107 10 62036104 62036122 GGGATTTGAATCTGGACCC 58 62106116 62106134 AACAGCAGCAATTCCACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pros1 ENSRNOG00000048723 ENSRNOT00000073689 1 1 1 80 7 1255242 1255262 TACTCCTGGAAGTTACCACTG 59 1255303 1258674 TCATCCACATCTTTGCAGTC 58 NA Rattus norvegicus 81 Got1l1 ENSRNOG00000038473 ENSRNOT00000035985 2 1 1 80 16 69026048 69026068 TTGTGATTGGGAACATCTCTG 58 69026108 69026224 TCTGCTTGCTCTTAATGATGG 59 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139,ENSRNOT00000005561 1 2 2 80 7 94562729 94562976 CATTCCAGGTAATATCCTTGTTCAC 60 94562673 94562693 CCCTCTTAATTCGACTTGCTG 59 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 3 2 2 82 8 129242677 129242698 AGGCAGACATCAATACAAAGTG 59 129242739 129242838 ATCTGTCATCTTGGCTTTCCT 60 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 1 2 2 80 5 157475738 157475757 TCACCTTGATTGGATTCAGC 58 157475800 157494436 CTTGGCAATCTTGCTCCTG 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 3 2 2 80 16 56317717 56326671 AGGACGGATGTTCATATTCGA 59 56326713 56326731 AACCAGCGACACTAAGAGG 59 NA Rattus norvegicus 81 Polm ENSRNOG00000013647 ENSRNOT00000018319 1 1 1 80 14 86070592 86070770 TTGATCCTGAGCGGAAGAC 60 86070530 86070550 GAGGAAGATACTTGAGACCCA 59 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 1 1 1 76 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482774 35484851 AGAGCATGAGAGCTTAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Dcaf13 ENSRNOG00000004301 ENSRNOT00000005803 3 1 1 81 7 78017085 78017103 GTGTGCTCAATGAACTGGG 59 78017144 78020515 CACAACTTCCCAAGAGATATGTC 59 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000064830 1 1 2 60 8 61917154 61917172 CAATGGCATGACTGTGTCC 59 61914795 61914814 ATAAAGCTCTGGCCTCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Fbxo32 ENSRNOG00000006738 ENSRNOT00000010361 2 1 1 80 7 98077053 98077855 GTAGTACTGAAAGTTCTTGAAGACC 60 98076997 98077017 GCATAAGGATGTGTAGAGGGT 59 NA Rattus norvegicus 81 Slc30a5 ENSRNOG00000018746 ENSRNOT00000025506 1 1 1 80 2 30831973 30831992 GAACACAGTGACATTGTCGT 59 30829286 30831930 TCCTCTTGTCTTTGCTGGT 59 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 1 2 2 81 9 7027015 7029226 TGCCAATCTTAACCTGTGGT 60 7029270 7029288 AGTTGGGTATTTCAGGCGA 59 NA Rattus norvegicus 81 Ctdspl ENSRNOG00000046257 ENSRNOT00000075793 2 1 1 170 8 127712684 127716173 CATACACCAGGTGTACGTG 58 127719867 127719885 GATTCTCTGAAGAGTCGGG 57 NA InUTR Rattus norvegicus 81 LOC100909862 ENSRNOG00000046359 ENSRNOT00000007560 1 1 1 125 2 35498761 35503454 GAAAGGAAGAGATTTGAACAGAGG 60 35498659 35498680 TTCCTAGGAAGAGGACAAAGAG 59 NA InUTR Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 1 3 5 84 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4418997 4419017 GCAATGAAGAGAAGGAAGACC 59 NA Rattus norvegicus 81 Olr380 ENSRNOG00000045761 ENSRNOT00000048193 3 1 1 60 1 230686474 230686492 GGCTATTCGGAAGATTCGT 57 230686432 230686451 AGATGCACAAGTAGAGAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 2 2 4 81 8 39185261 39185279 CAATGCCTGAAAGAGACCT 57 39184086 39185219 CCATTGTTGATACAGTAACCTG 57 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184,ENSRNOT00000024657 3 2 2 80 3 161459789 161459807 AAGAAAGACCTGACCACGT 59 161459849 161459944 GCTATCTGAGTGGTCCATCTC 60 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023,ENSRNOT00000067486 3 2 2 80 16 50380026 50380044 CCTTCCAACTCTCCCTCAG 59 50379377 50379983 AAGATCCACCACTTTAGCGT 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383 2 1 4 80 14 84278015 84278033 CTTCTTCCTTCTGCGTTGG 59 84308383 84308530 AACTCCATGTACTTGCGGA 59 NA Rattus norvegicus 81 Cenpw ENSRNOG00000042944 ENSRNOT00000065677 1 1 1 80 1 29918026 29918046 AGTCTAGGACAAATGCTTGTG 58 29918087 29919355 TCAGAATTACCTTTGCTGCC 59 NA Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000086867 1 1 2 80 1 64931951 64964674 ATGTCTGCAATAAGCTGGGT 60 64964712 64964735 CTTGATTCATACTTACTCTGTCCC 59 NA Rattus norvegicus 81 Sapcd2 ENSRNOG00000013069 ENSRNOT00000017466 3 1 1 82 3 2596061 2596156 TTCTCACTCAGGAGGTGAC 58 2596201 2596220 AAACAGCTGCTTGATGAGTG 59 NA Rattus norvegicus 81 Bbs1 ENSRNOG00000019832 ENSRNOT00000026915 1 1 1 80 1 220159767 220161603 AGCGTCAGACAGTCATCAC 60 220159705 220159723 CTAGCACCAGACAGGACAC 60 NA Rattus norvegicus 81 Echdc1 ENSRNOG00000011622 ENSRNOT00000015440 1 1 1 80 1 30915761 30915783 CAGAAGAAGCAGAATGGTATTGG 60 30906410 30915721 TAGCATCATGGCACCTGAG 60 NA Rattus norvegicus 81 Frrs1 ENSRNOG00000016351 ENSRNOT00000021988 2 1 1 80 2 220466334 220468003 GCTAGAATAATAGCAGTGGCAG 59 220468043 220468062 GTAGGTCTTCTGTGGACTGG 60 NA Rattus norvegicus 81 LOC691491 ENSRNOG00000045737 ENSRNOT00000048862 3 1 1 87 16 66381092 66381111 GAAGTGTCAATTCGAGAGGG 58 66381161 66382521 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000012086 ENSRNOT00000016098 1 1 1 60 16 70081761 70081784 CGGATGAAAGTTAAGAAACTACCC 60 70081929 70081948 ACTTAAACCTCTTCAGGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Etv2 ENSRNOG00000024288 ENSRNOT00000031873 3 1 1 85 1 89093254 89093275 GTTTCTATTTCCCTGAAGTGGC 60 89092990 89093208 CTCTGGGAACCCTTTCCAG 60 NA Rattus norvegicus 81 Rnf7 ENSRNOG00000011663 ENSRNOT00000015821 2 1 1 82 8 104327705 104330000 AAGAGGACTGTGTTGTGGT 59 104327641 104327659 GTTGTTCTGCTTCACCCAC 59 NA Rattus norvegicus 81 Eomes ENSRNOG00000042140 ENSRNOT00000013530 1 1 1 80 8 127148947 127150764 AACTACGATTCCATGTACACC 58 127150805 127150824 AATCTGGTGGGATCTAGGAG 58 NA Rattus norvegicus 81 Olr8 ENSRNOG00000030070 ENSRNOT00000050607 3 1 1 60 1 70495616 70495634 CCACAAAGCCTTCTCTACC 58 70495574 70495594 GGCTGAGTAGAATATACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccno ENSRNOG00000010454 ENSRNOT00000013871 1 1 1 82 2 44857663 44857681 TGCTACGACTTCCGAAAGG 60 44857726 44858302 GATTCAGCAGTCACTTGTGG 59 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 2 1 1 60 8 43534485 43534536 GGTAAAGCTGAAGACAAGGA 58 43534444 43534462 TGTCCTTAACCAGGTGACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911186 ENSRNOG00000047565 ENSRNOT00000071574 1 1 1 80 1 141824803 141825433 CAATGGCTATGCTCTTGGTG 59 141825476 141825494 CCAAACTGGGCTTTCTCAC 59 NA Rattus norvegicus 81 Adrm1 ENSRNOG00000055984 ENSRNOT00000091941 1 1 1 85 3 175548726 175548744 TCGTGTACATCCAGCAGAC 60 175548792 175549428 AATCAAGTCATCCTCCACGG 60 NA Rattus norvegicus 81 Cd82 ENSRNOG00000000047 ENSRNOT00000000052 2 1 1 80 3 82338670 82342672 TGCTGTTCTTTATCCTGGGT 59 82338609 82338628 GGACAGAAATGAAGCTGCTC 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980,ENSRNOT00000029284 2 2 2 80 16 71274530 71276706 TCCAGATCCTGAAGACTGC 59 71274468 71274486 CCTCAAAGGAGACATTCCG 58 NA Rattus norvegicus 81 Cplx3 ENSRNOG00000019317 ENSRNOT00000026165 3 1 1 82 8 62384499 62385723 GAGGAGAAGATGGAGCGAG 59 62384435 62384456 TATTTGTCCCTGAAGTGACTCC 60 NA Rattus norvegicus 81 Nanp ENSRNOG00000008307 ENSRNOT00000011315 2 1 1 104 3 146801226 146812893 GCATGTTGGAGGTAATAAAGCT 59 146801143 146801161 GAAAGCACTCCTTGCTCAG 59 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 1 1 1 64 3 153949310 153951982 GATTCAAAGGAAGATGATTCGG 58 153949267 153949285 TCAGATGGTCCTTTGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 3 2 2 80 5 70338047 70338066 TTCCGAGTACACTCTGACTG 59 70338107 70345599 AAGAATGGAATAGGTGCACTG 58 NA Rattus norvegicus 81 Tmem56 ENSRNOG00000025160 ENSRNOT00000032324 1 1 1 80 2 224778013 224778034 CTTGCATACATTGCCAATTTCC 59 224773454 224777975 CAGGACTTCAAAGAACCATCTC 59 NA Rattus norvegicus 81 Tal2 ENSRNOG00000028082 ENSRNOT00000035687 1 1 1 60 5 70598342 70598363 CAGAAAGATCTTCACAAACACC 58 70598384 70598402 AAAGGCGCTGTTAACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574,ENSRNOT00000065222 1 2 2 80 2 227577847 227578222 TACCTTCCTTAAGGGAACGC 60 227577786 227577805 TGAGGTCTATGTCCAGTGTC 59 NA Rattus norvegicus 81 Mrps30 ENSRNOG00000012136 ENSRNOT00000016190 3 1 1 83 2 51045142 51046801 TATTTACTGGCTCCAAACTTGC 59 51045080 51045102 GTTCCCTATTCAGTATGTCAGGT 60 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 1 2 2 80 8 132885928 132886965 GACTAAAGACAGCCAATGAAGAG 60 132885870 132885889 CCTTAGTCATTTGCAGCTCC 59 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 2 2 2 80 16 72018786 72019643 TCATACTTACTGGCATTTGTGG 59 72019684 72019702 ACCATAGATCGGTTTGCAC 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000086791 2 1 8 80 20 4458751 4458769 TGCTACTCTATGGCCTTCG 59 4458811 4459679 CTGTTGTTTCTCTAGGGTCAG 58 NA Rattus norvegicus 81 Olr1218 ENSRNOG00000047382 ENSRNOT00000072247 2 1 1 60 8 43908249 43908270 CACCGTCTCTGTTTCTTATACC 59 43908210 43908230 CTTTGTAGAATGGATGCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070046.1 ENSRNOG00000039200 ENSRNOT00000059997 1 1 1 89 8 45797690 45806549 CTACTTCAAATGGCTGGCC 59 45806602 45806620 ATCAGTCTGCAGTCTCTGC 60 NA Rattus norvegicus 81 Camk2n1 ENSRNOG00000016322 ENSRNOT00000021864 1 1 1 87 5 156876806 156876824 ACACCAACAACTTCTTCGG 58 156876875 156878265 TCTTCAATAACAACGCGCT 58 NA Rattus norvegicus 81 Ccdc110 ENSRNOG00000045697 ENSRNOT00000074490 1 1 1 85 16 47160703 47162035 AGGATTTGCCTAACAAGACAC 59 47160638 47160658 CATTGAATGGAGAGTCTTGGG 59 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 3 2 2 80 5 159521403 159521422 TATGCTGTCTGCATCTTCCT 59 159521464 159521568 CAGAGTCATGCTTTGCTTCC 60 NA Rattus norvegicus 81 LOC683897 ENSRNOG00000047118 ENSRNOT00000072716 2 1 1 80 20 48276206 48276453 GTGGAAGAGCTTAAAGAGACG 59 48276146 48276165 TAATGTGGGAAGTGGTAGGC 60 NA Rattus norvegicus 81 AABR07049043.1 ENSRNOG00000047278 ENSRNOT00000014357 1 1 1 61 5 101510718 101510738 CCATGAACGTTCAAAGAAAGC 59 101510761 101510781 GTTTATGGTAGAGCTTAGCCT 57 NA DesignNoJunction Rattus norvegicus 81 LOC688390 ENSRNOG00000026080 ENSRNOT00000038842 2 1 1 68 20 47911370 47911388 TATGTGGAGGCCGAATGTC 60 47911420 47911438 CTTCCTGGCAAACAGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910936 ENSRNOG00000049753 ENSRNOT00000075252 1 1 1 60 20 1134361 1134381 ATGTCCACATATTCTCCACAG 58 1134402 1134421 AAGACCTTAGACCTGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdss2 ENSRNOG00000042962 ENSRNOT00000067169 3 1 1 80 20 48161160 48191952 AACTACACTAAGTTGCGGGA 59 48191993 48192013 GTTTCCATGGTAACGACACAG 60 NA Rattus norvegicus 81 Ptafr ENSRNOG00000013231 ENSRNOT00000017687 1 1 1 87 5 150754064 150772426 CTCCTATAGGGACATACAACGT 59 150772474 150772492 AGAATCCACACGGAAGGAG 59 NA InUTR Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 1 2 2 80 8 63146090 63146110 CTTACAGGGTACTACTCATGG 57 63143293 63146051 GGAGTTATAGTTCCTCCTTCTG 58 NA Rattus norvegicus 81 Ccr8 ENSRNOG00000026759 ENSRNOT00000029766 1 1 1 60 8 128781649 128781667 CATTCCCTTTCAGACCCAC 58 128781691 128781709 CTTACACATCACGGTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp105 ENSRNOG00000032919 ENSRNOT00000040625 3 1 1 82 8 132002379 132002398 CTGGGAACATCAAGAACTGG 59 132002443 132004685 TTTCTGACCCTTCTCCTCC 58 NA Rattus norvegicus 81 Sowahc ENSRNOG00000048831 ENSRNOT00000075800 2 1 1 60 20 28816205 28816224 ACGCAGATGTAGACATCAGG 60 28816244 28816265 CTCTCACTCAGATACTGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690386 ENSRNOG00000042383 ENSRNOT00000068374 1 1 1 87 20 11545705 11545723 TGTCAGTCATCCTGCTGTG 60 11545636 11545654 AGATGGAGACACAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1704 ENSRNOG00000048262 ENSRNOT00000073732 1 1 1 60 20 1012258 1012277 CTGGACCTCTCATCACTCTC 59 1012300 1012318 TATGTGCCAGGGAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1693 ENSRNOG00000000749 ENSRNOT00000000976 3 1 1 60 20 830632 830652 ACAATGGACCTCATAGTCTCC 59 830592 830610 TGAGTGGATTGAGTGTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl39 ENSRNOG00000048073 ENSRNOT00000046536 2 1 1 60 20 18492188 18492207 TCAGAATCAAGCGATTCCTG 58 18492228 18492248 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1671 ENSRNOG00000000726 ENSRNOT00000000953 3 1 1 85 20 399107 399125 TAACACCTAGCCTCAACCC 59 398895 399059 AAAGGTATTTCTACGCAGCC 58 NA Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 3 1 1 77 16 75227605 75241244 GGTTGCTGGAATTCTAGGAC 58 75227547 75227566 TTGAGACAGAACCCTTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Olr1684 ENSRNOG00000040183 ENSRNOT00000061839 2 1 1 60 20 573028 573047 CTACCTACAACGAAGTCCAG 58 573069 573088 GCCAAAGGTAACACTAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1692 ENSRNOG00000032716 ENSRNOT00000040957 3 1 1 60 20 820475 820495 CTCCCTCCAACTTTAAACCCT 60 820435 820453 CAGCTCCCTTCAAGGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 2 1 2 90 5 156682867 156683578 ATATCTCGGCAGGATCCTC 58 156682795 156682813 TACTCTCCATCCAAAGCCA 58 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 1 2 2 80 16 69070812 69070833 AGATAACAAACTCTAGCTTGGG 58 69070872 69074892 GCTGGTATTTCTTCATGAGGG 59 NA Rattus norvegicus 81 Tmem50a ENSRNOG00000017279 ENSRNOT00000023221 2 1 1 80 5 153246935 153246956 CAATATGGAGCAATTCAACCAC 58 153244093 153246897 GATACTGCGTTAATCATGAGGA 58 NA Rattus norvegicus 81 Tmod1 ENSRNOG00000009761 ENSRNOT00000013228 1 1 1 80 5 61703397 61703415 TGGCTACCACTTTACCCAG 59 61703459 61710578 CTCTTCCTCACAAGGTCGT 59 NA Rattus norvegicus 81 Api5 ENSRNOG00000009689 ENSRNOT00000013914 2 1 1 80 3 83321735 83321754 CAGGTCCTCCCTAATCTCAG 59 83320499 83321695 TGCCAACAACTTTAATACCTCC 59 NA Rattus norvegicus 81 Atp5e ENSRNOG00000049912 ENSRNOT00000071913 1 1 1 80 3 172564624 172565924 CTGGACTCAGCTACATCCG 60 172564562 172564581 CGTTCGCTTTGAACTCAGTC 60 NA Rattus norvegicus 81 Bpifb4 ENSRNOG00000034174 ENSRNOT00000044574 3 1 1 81 3 149440647 149440665 TAAGCTCATGATCGATGCC 58 149442374 149444309 GATGAACACATCAAAGTTGCC 59 NA Rattus norvegicus 81 Ank1 ENSRNOG00000018241 ENSRNOT00000064070 1 1 1 80 16 73698515 73698533 GAGCAGAAACCTCAAACCA 58 73690528 73698472 GAGGAGTAACCATTCACCTG 58 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 3 2 2 81 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731182 157731200 GATTTGTTGGTTTGCAGCC 59 NA Rattus norvegicus 81 Igsf21 ENSRNOG00000049959 ENSRNOT00000074336 1 1 1 80 5 158504518 158505007 GATTTCAGAATGAGGTCTTCCC 59 158504459 158504477 ATTCAGCACTCCCATCCAG 60 NA Rattus norvegicus 81 Agpat6 ENSRNOG00000018077 ENSRNOT00000024392 1 1 1 80 16 73645037 73647872 GTTGCTATCAAGTATGACCCTC 59 73647913 73647931 TCTGAGCAAGTACGTCACC 60 NA Rattus norvegicus 81 Micu3 ENSRNOG00000012767 ENSRNOT00000017025 1 1 1 80 16 55096002 55100380 ACAGATGAGCCCAAATTTGC 60 55086625 55086644 TGGTGGAGTTTCTGAAAGCA 60 NA Rattus norvegicus 81 Bpifa2f ENSRNOG00000036870 ENSRNOT00000055345 3 1 1 84 3 149530982 149531002 TGTCAACTTAGCTCTGGACTC 60 149531048 149531769 GAGCACTGGACACAATTGG 59 NA Rattus norvegicus 81 Efnb2 ENSRNOG00000014648 ENSRNOT00000019675 2 1 1 80 16 86669294 86670053 TTGGACAAGATGCAAGTTCTG 59 86670094 86670113 CATTCGTACCAGCTTCTAGC 59 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252,ENSRNOT00000090036 1 2 2 80 16 62226130 62226151 CTCGGAATTCATACATGATCAC 57 62225061 62226089 TTCTCCTTGATGACATGCC 58 NA Rattus norvegicus 81 Cox4i2 ENSRNOG00000007827 ENSRNOT00000010418 1 1 1 82 3 148241189 148241207 GAAGACAGTAATGGGCTGC 59 148241253 148245127 TAGGGAACACATAGACCCG 58 NA Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000080707 2 1 2 80 3 160092980 160110131 AAATTAAACTAGGCCTGAGGAG 58 160110172 160110190 GGTCACAGGAGATGAAGTC 57 NA InUTR Rattus norvegicus 81 Hoxd10 ENSRNOG00000001581 ENSRNOT00000002148 2 1 1 82 3 61614962 61616343 GAGAAGGAAAGCAAAGAGGA 58 61616388 61616406 CACCTCTTCTTTCTGCCAC 59 NA Rattus norvegicus 81 Defa11 ENSRNOG00000038133 ENSRNOT00000058037 2 1 1 94 16 75517645 75518183 CAAGATGCAGATGTGAAGTCAG 60 75517572 75517590 CCATTGTAACCGCATTCCC 59 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 2 2 2 80 16 90325669 90332898 CATGGACCTCAGTGTTAGC 58 90332939 90332960 GTATAGATGAAGAGGCAAAGGG 58 NA Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823,ENSRNOT00000008959 3 2 2 80 3 171003258 171003844 TACGGATCCATGTCCATGTC 59 171003887 171003905 ATCAGAAGGGAGGAGACCA 59 NA Rattus norvegicus 81 Fam83c ENSRNOG00000046772 ENSRNOT00000073178 3 1 1 81 3 151367232 151367588 AGTTACAGCTTCACTTGGC 58 151367169 151367188 CAAAGTCTTCCACAATGTGG 57 NA Rattus norvegicus 81 AC107446.2 ENSRNOG00000047948 ENSRNOT00000038429 2 1 1 89 3 57771787 57771808 AAAGCTCATTTCCTGGTATGAC 59 57771858 57772027 AGGTTCTGCATCTTGGAGG 59 NA Rattus norvegicus 81 AABR07054352.2 ENSRNOG00000050088 ENSRNOT00000071869 1 1 1 84 3 149556826 149556845 CAACGGATTTCTGAACACTG 57 149556150 149556782 GTGAAACTGTGGACATATTTGG 58 NA Rattus norvegicus 81 AABR07054352.2 ENSRNOG00000050088 ENSRNOT00000071869 3 1 1 87 3 149556828 149556848 CATCAACGGATTTCTGAACAC 58 149556150 149556782 GTGAAACTGTGGACATATTTGG 58 NA Rattus norvegicus 81 Ifih1 ENSRNOG00000006227 ENSRNOT00000009620 1 1 1 80 3 48582292 48582312 CTGCTTCGATGAAAGTCTTGG 60 48576352 48582255 GTATCTTCATCTGAATCACTTCCC 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677,ENSRNOT00000063906 1 2 2 80 3 159322659 159322680 CAACAAAGTATTGGTCTAGACG 57 159322721 159322882 CTCAACTATGACTGACCGC 58 NA Rattus norvegicus 81 Sla2 ENSRNOG00000020337 ENSRNOT00000027581 3 1 1 80 3 152954587 152998152 TGTCCATACAAGCAGAAAGAC 58 152954527 152954545 GAGATAGTCTGGCCTGCTC 59 NA Rattus norvegicus 81 Purg ENSRNOG00000015426 ENSRNOT00000020683 1 1 1 60 16 62482090 62482109 GTTCTACTTTGATGTGGGCT 58 62482049 62482069 CCTCACCTCACTTACCTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfdc12 ENSRNOG00000032412 ENSRNOT00000041980 3 1 1 95 3 160581722 160581740 CTGGAGGTGGAGTCAAAGG 60 160581532 160581551 CGTTGTCATTGTGACACTGG 60 NA DesignNoJunction Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000058072,ENSRNOT00000089265 2 2 2 80 16 74913979 74915853 AACTGATTATCACAGGGATGAC 58 74915894 74915912 AAGTGATGCCATTTGTCCT 57 NA Rattus norvegicus 81 Defb39 ENSRNOG00000034275 ENSRNOT00000040406 1 1 1 80 16 75042634 75046167 AGATCAACTCAGTGTCTGGT 58 75046210 75046228 AATATGGGCATCGGATGGT 59 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 3 1 1 64 16 82439340 82439362 CCTCGTCATATTTCCTGAACTG 59 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 1 3 5 92 X 22286012 22286031 CTCTATGAGGTGCCAGATCC 60 22286086 22288508 TTTGGTGACCACAAGGAGG 60 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 2 3 3 80 11 38055775 38055794 TGCCTTTACAACGGTTTCTG 59 38055834 38057691 ATGTCTTCAAGTTTGGACTTGG 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 1 2 3 105 2 187863065 187863083 CAAGACCCTCGACTCTGTG 60 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 1 2 3 105 2 187863065 187863083 CAAGACCCTCGACTCTGTG 60 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000063943 3 1 2 81 15 40528148 40528168 GCGGAAATAGCTTTAAGAACC 58 40526752 40528105 GAACCAAGACTCTGTCAGC 58 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 1 2 2 80 5 137258429 137258616 ATTGATGAAGTGTGCAGATCC 59 137258653 137258676 GTCAGAAGGATGGATGTTATTAGC 60 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074 1 1 2 82 8 62930777 62930795 CTTCAGCAATCTGTGCCTG 59 62930841 62930864 TTGCTGGATACCTGGATGC 60 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 1 2 2 80 2 123806483 123806504 ACAGAACATCAACCTTTACCTC 58 123806543 123808094 GGATTAAGGCGTAACTGTGAC 59 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000035125 2 1 2 145 1 56163448 56168111 CTGTCACGGCTAAGGAGAC 60 56162282 56163340 TCATAGAAACCTGAGCTGGG 59 NA Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209 2 1 2 80 11 38359060 38369403 GAAGCATAAAGAAGGAATCCTAAGG 60 38359004 38359023 CTCAAGCTTGGGTCTTTCTG 59 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 2 2 2 80 5 14611273 14611995 ATGAAGGACATAGTTTCAGGC 58 14612034 14612055 CAACTCGACCTAAATCAATGAG 57 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621 1 1 2 80 5 14616943 14617581 CCCAAGAAGTCTAGAAATTCTGTG 60 14617619 14617638 GGTGGAAGCATTCTCTTTGG 59 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 1 2 2 80 1 83513153 83513172 GACCAAGCTGAAGCTTTCTC 59 83513213 83513375 GGCAAAGATCACACCATATCC 59 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000078856 3 1 2 80 11 47263860 47264122 CTCACTTTGTGACATCACCA 58 47264164 47264183 TCTCCAGTTTGGATTCACTG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000068553 1 1 6 80 17 84174993 84175011 CATGCAACAGCCATTTCTG 58 84171290 84174951 ATACTGGAACCTATTGATGACG 58 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000074298 1 1 2 81 1 212021555 212021810 CACTCAAGATGAAAGAGCCTG 59 212021494 212021512 AGGAACTGAGTGACTGGTG 59 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000002719 2 1 2 80 11 51054722 51057516 CTATTTGAAGGGTGAAGATGC 57 51054662 51054681 ATGAGACTATGTCTTGCAGG 57 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559 2 2 3 99 17 10617655 10618280 AAATCCAACAGCTGCATCC 59 10611064 10611082 CGTCCAGGTAAAGTTTGCC 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 3 2 2 80 2 263476832 263476851 CTGATAAGATGTGAGGGTGC 58 263476894 263490944 TTGGCCATTGAAGAGTCTC 58 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000048417 2 1 2 94 11 46202427 46202445 GTACCAACAGTACCAGCAG 58 46202500 46205155 TTGACTGGAATCCTGAATACTG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817 3 1 7 80 11 46245062 46245638 AAGTGAAACTGTTCTGCCTC 59 46244224 46244243 ATGTCCCGTGTCTCTAAAGG 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000064153 1 1 2 97 1 86971001 86971021 TGACTCCAAGAAGGCTTACAG 60 86971188 86971289 CTTCCAGCTCCTTCCATCC 60 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000084214 1 1 2 84 12 51961562 51961580 TGGACATTGAAGAGGAGGA 58 51961627 51963151 CCTGTCACAACCTTTACCTC 58 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002946 1 1 2 88 14 6931049 6931067 AATCTCAGTCCCACAGAGG 58 6930261 6930998 CCTTCGGTTTCTAATCCCTG 58 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000087120 2 1 3 86 4 7228981 7229246 CTTAAAGTGGGCATAGTGGG 58 7228914 7228932 TTCTTCCTGGACGTAGGTC 58 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743 3 1 2 148 3 129897325 130009855 TTTGTCATCAAATGCGGGA 58 130014619 130014640 TCCTTAACTCTGGAATCAATGG 58 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218 1 1 2 81 13 88725554 88868191 GAATCCGGTATGAGTTTAAAGCC 60 88725495 88725513 ATCACTTTGACACCGTCCA 59 NA Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 2 2 2 81 4 145383707 145383727 AAGCCCTACCAAGAGATACAG 59 145383563 145383664 TTCTTCTTGCGCTGTTCTG 59 NA Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 3 2 2 81 4 145378503 145383391 CATCGTGAAGGAAATGCTCC 59 145378441 145378459 CATGTAACTGGAGGTGCCA 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 1 3 3 80 8 109511341 109511360 GGGAAGAATGAGCTATGCAG 59 109502103 109511300 CAATACTCAATGCTGGTAGGG 59 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 3 3 3 105 20 9791406 9817306 GGAAGAAAGGATACAAGACCC 58 9817373 9817391 ATGAGTGTGGACTTCCCAG 59 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863 3 1 2 82 1 188503154 188507608 AGCCTTTATCAAGCACCAG 58 188507651 188507672 CGTGCATAGTCTTACAAATGTG 58 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000059895 2 1 2 86 10 18359776 18359796 TAGAACTTGCAGTTCTCTGGT 59 18250390 18359728 GGGCATACACCTTTGAGGT 60 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 3 2 2 81 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000068353 2 1 2 86 15 39893027 39893906 GCATGACGGGTCAAATACC 59 39892959 39892977 CTTCTACTCCCGGGAAGAG 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709 2 1 2 85 6 60774236 60776008 TGAGAAAGCTGTGAATCCCA 59 60776055 60776074 TAAGTTTCCCACTGTCCGAC 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 3 2 10 82 2 231250896 231255696 ACAACAGCAACAAGATGATGAG 60 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615 3 2 10 88 2 231232985 231233004 CAGTCAACATTGAGGATGGG 59 231226955 231232934 ATTGTTGTCCTCTGACAGC 58 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 3 5 7 81 1 215610628 215610647 GAAGCAGAACTACCTGTCAG 58 215610691 215610849 TTGTTTGCAGAGTTCCTGC 59 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 3 2 2 81 1 207756471 207756490 ATCAGCAACCCTTACCAGAC 60 207752090 207756429 TCAGAAACACAAAGGATGCAC 60 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 3 2 2 80 1 164869917 164873140 GCCTCTAGATGTCTTTCACAC 59 164873179 164873200 TTCACATAGACCATCTTGATGC 59 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 1 2 2 80 10 91017976 91018278 ACCTGGAGGTGTATAACGAG 59 91017915 91017933 CCTTATCAGGGTCCTCTCG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 2 3 3 80 12 8091945 8091966 ATTTGTGAAAGGCTCCATTGAG 60 8092006 8094725 ACGTTTGTGTCATTGTTCCC 59 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924 2 1 2 83 X 34630171 34661123 CTCCTAACGTCCCACTCTC 59 34661170 34661188 GGGAACATTGTGGATTGGG 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000079947 1 2 3 80 4 157239572 157239593 GGAAGAGAAAGTAAAGAAGCAG 57 157239306 157239531 GGAGTAAGGCTGATGTTCC 58 NA Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 3 2 2 80 2 189723648 189725007 CATTACAGGGTCACAGTGTC 58 189725049 189725068 GTGCAATAACACGTTGAGAC 58 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 2 2 2 80 1 80708308 80708327 GAAAGAACCACAACCCAGAC 59 80706244 80708265 GCAGTTGTTCCTGTGACAC 59 NA Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 2 2 2 81 1 267018932 267018952 CAGCTTCTGTAATGCCATCAC 60 267018993 267019344 CTGCTTCTTGGTGATCTTCAG 59 NA Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 2 2 2 82 14 88573311 88573329 AGATGACTCTGCTGAGGAG 58 88573375 88573498 CATCCTTCAACTCCAGCTG 58 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637 1 1 2 91 6 27561412 27561430 GGGTTATAAGCCAAAGGCA 58 27560601 27561280 GAGTAGCATATGTTGGTCCA 57 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 3 2 2 80 5 138178073 138178779 CTTATTGCCCAGGTGTTCG 59 138178821 138178841 GATGAAGATGACACTGAGCAG 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600 3 1 2 81 6 83426450 83426468 AAGAGCACATACCAAGCCA 59 83431900 83438232 TTATATGGACTCCAGCCTCTG 59 NA Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 2 1 1 69 3 147985562 147985580 TTGCTAACTCAGGTGACCA 59 147982494 147982514 GCCCTAAATTATCCTTCCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 1 2 2 80 1 177214069 177225634 TGAGAGGAGAAACAGATTCAG 57 177225675 177225694 TATTCTTCTCCAGAACCAGC 57 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000090849 1 1 3 82 7 18577196 18577216 TAGCTCAAGTGACTTCAAGGG 60 18564675 18577152 CTGGGTCCTTTAGCCACTC 60 NA InUTR Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 1 1 2 80 10 90346245 90346613 ACCGATTTAAAGCTTGTGCC 60 90346655 90346674 GGATATAGTCCCAGAAGCCC 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617 3 1 2 80 20 5987487 5987506 GCTTCAGCAGATAATGCGTC 60 5987548 5988750 TAGTTTCTTGCCTCATGGCT 60 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630 2 1 2 80 19 25155959 25156059 CATAAAGGAATTAGCACCGCT 59 25155899 25155917 CATGCTACAACAGGTGTCC 59 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 3 2 2 90 3 7194091 7194920 AGTGTAACAAGGTGTTCTCCA 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927 2 1 2 80 18 37950476 37951076 GGGCACCAGAATGTTAAAGG 59 37941847 37941868 TAGTCTAGTTCTTCCTCCAGGT 60 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 1 2 2 80 1 73659965 73659988 TATACCGCTGTTACTATAAGACCC 60 73659771 73659930 TATAGAGTCCTGTCACTACAAGC 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 1 4 4 80 6 8257523 8257541 CCAAGGTCTCAGATGAAGC 58 8257584 8260433 TCTGCATGATTTCTTCCACC 58 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 2 2 2 83 4 7383682 7383700 GAGGTGTTGGACATGTACC 58 7383746 7384018 CATGTTGGTATCTCGAAGGT 57 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 3 3 4 81 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534704 43537130 AACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 2 1 1 125 1 100810414 100810434 CGTAGACTATGGGAAACTCCC 60 100809057 100809075 CAATCAGAGAAGCCGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 3 2 2 81 13 89587353 89588669 GGAAAGACATGATACTGTCAGC 59 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 1 2 2 60 20 1889944 1889965 AACTCTTCATCTTCATGTCCCT 59 1889986 1890004 AAGGCCATCACTGTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927 3 1 2 80 13 99411653 99411671 TGACGGTCAGTCATAAGCA 59 99410306 99411614 CGTACATCCTTTGATCCTTTACTG 60 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 2 2 2 80 5 115350461 115350479 TGTAGACTGCCTCAACCTG 59 115343913 115350420 ATAGACATGATCTTGGGCAGAG 60 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000086560 3 1 2 90 19 19673486 19677320 GGAGGAGAGTCAAGGAGGA 60 19677371 19677392 CTTATAGGGACATGACACTGGA 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656 3 3 6 84 1 282681116 282681756 TCTAACCTGCCTGTGATGG 59 282681802 282681822 CTGCCAATAGAGATCCATCAC 58 NA Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699 2 1 2 80 17 42639901 42640147 GATGGACAGGAAACAGACAG 58 42639840 42639860 AAATTGACTCCTTCCTTGAGG 58 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 3 4 4 80 10 82078730 82080621 TCCTATGCCTTACAGGTGAC 59 82078669 82078691 CACGGCTATGATATTAGACTCCA 60 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000085451 3 1 4 80 10 82095121 82095140 GCTTTGGTGAGAACCTTCAC 60 82095059 82095079 GGTTGATGAAGGAGACAGGT 60 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 1 2 2 80 6 49530745 49530763 ACTTCTCACATGCTTCTCC 57 49530804 49532450 GCACAATAGACTAACACTACCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000004614 1 1 2 80 19 23945413 23945432 AGAAGTACCGTTGACCTAGC 59 23944320 23944805 TCTATTCTTCTGCCGCCTC 59 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550 1 1 2 82 1 88955289 88955307 TGGTCACTCATGGACTAGC 59 88955423 88955445 TCCATAAAGCTCAGAACATGC 59 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 2 2 2 80 3 129078450 129146887 GCTCCCATGAAGACAATCG 59 129078388 129078408 GTTGTCGAAATCCTCTAGCAG 59 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 3 2 2 80 3 129078446 129146884 CCCATGAAGACAATCGTCAG 59 129078385 129078406 GATGTTGTCGAAATCCTCTAGC 59 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 1 1 2 102 1 267607702 267607720 TCTGTCCCTTTGCTCAGAG 59 267608875 267608894 TGTTTAAGATGTCACTGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 1 4 5 80 4 22296910 22296931 CCATCATGAATCAGGAGATAGG 58 22296185 22296869 TGGAGACGTCATCTGTGAG 59 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310 3 1 3 86 17 23074659 23074677 TTGAAGAATGGCTTGGTGG 58 23074724 23136871 CATAAGATTCTCAGACACGCTG 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 1 1 2 112 10 15242587 15242605 ACTTTGACCTGACCCTCAG 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 2 3 3 89 12 7464294 7464312 TTCCCTGTGTCTTGTCGAG 59 7464365 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 1 2 2 80 17 42736622 42736643 TCTCTTTGACCATGCTATTGTC 59 42726719 42736582 AATGCATACCCAAACTCCTC 58 NA Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 3 2 2 80 10 63753430 63753453 GAGTACATGAAGGAAGACTTTCTC 59 63753490 63756364 TTTATGCACATTCTCCTGGGT 60 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405,ENSRNOT00000085900 2 3 3 60 20 2092327 2092345 GATGCCTTCTTGGTCTCCT 59 2092367 2092387 TGGGTCGATGATCTTATTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 2 2 3 80 20 2089441 2092246 ATCAACTGCAAGTTTCAGGA 58 2092289 2092307 TCCAAGAGGAGGAAAGGAC 58 NA InUTR Rattus norvegicus 81 Eif3e ENSRNOG00000027690 ENSRNOT00000038340 1 1 1 80 13 100145536 100149432 CCAACCACAGTACCTTAATGC 59 100149474 100149492 TTGTTGGTTATGACGGCAG 59 NA Rattus norvegicus 81 Defb28 ENSRNOG00000036900 ENSRNOT00000055412 2 1 1 81 3 147992783 147992801 GGGACACATTAAGCTCTGG 58 147992845 147994469 CGTTCTGAACCATCCTTCTG 59 NA Rattus norvegicus 81 LOC100361103 ENSRNOG00000000957 ENSRNOT00000001265 3 1 1 82 12 9997887 9998362 TAGACATCAAGGGAATGGGC 60 9997824 9997844 GACATTGTAGACTCTTCCGGT 60 NA Rattus norvegicus 81 Slc45a2 ENSRNOG00000018759 ENSRNOT00000025490 1 1 1 80 2 60995002 60995024 GTCATGTCCAGCACATTATACAC 60 60995063 60998687 CTGCTGCTTCTCTTTCTCCT 60 NA Rattus norvegicus 81 Pabpc4 ENSRNOG00000015642 ENSRNOT00000056592 2 1 1 80 5 140993500 140993519 GGATGCTGCTAGAAATCGAC 59 140993562 140993850 CTTCATCCACCTTGGAACG 59 NA Rattus norvegicus 81 Naa20 ENSRNOG00000010523 ENSRNOT00000014046 1 1 1 80 3 140124016 140124434 ATGAGGATGCCTACGATATGAG 59 140124474 140124493 TCACAGGATGAGGTAATGGG 59 NA Rattus norvegicus 81 Stx1b ENSRNOG00000019193 ENSRNOT00000026063 1 1 1 80 1 199262526 199262545 GTGACGATGAAGAGGAAGTG 58 199262282 199262483 CTCGGATCTCTTCCACCTG 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107 1 1 2 80 10 59682168 59682187 AAGCTGCCTTATGAAGTGGA 60 59682230 59683679 TCCTCACAAAGCTCCTCTG 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019309 2 1 3 80 1 193251605 193255716 GGTGAAGAAGGAGAGTCCTC 59 193251544 193251563 ATCTGGTTGCTGTTTCTTCC 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000076771 3 2 4 124 3 57646535 57646555 CAAAGAAGCAGTCCCTTTCTG 60 57607687 57646449 AAACAGGACCTTTGGAGGG 60 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284 2 1 2 80 10 103677450 103677468 TTCACAGTGACAACCACTG 58 103673815 103677409 ACTGTCATACCTGTTATCAGAG 57 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857 2 1 2 80 1 218435363 218435382 CTACTTCCGGAACCTTCCAG 60 218433533 218435320 AACAAGCTTCCATCAGGGT 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 2 1 1 60 2 111061155 111061176 GTAGTAATGACATACTGGACGA 57 111059905 111059924 GAGGAACTGGTTGATTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458 2 1 2 80 12 13524348 13526531 CCTGACAGAAACACATAAACCT 59 13526570 13526590 AATCTGTTCAGATCTTGCCAC 59 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000042754 2 1 2 85 11 57457811 57460552 GAGTTCAGAGCACTTTAGAAGC 59 57460598 57460616 TCTTTCGAGGCAGAGTGTC 60 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 2 2 2 80 10 38931240 38931371 GACACAAGGTTTCTGGTTCG 60 38931411 38931432 TGTCTGATCTTTACCCAGAAGG 60 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000042432 1 1 2 95 20 10364053 10364710 AGATCCAATCACGAGACCAG 59 10362781 10362799 CACCAAACACCATCAGCTG 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000083413 3 1 9 130 20 2088057 2088289 AGTTAAGCCGCTCAGTAGTC 60 2087653 2087965 TTGTACGCTTTCAAGTGCTC 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000016145 3 1 2 99 8 48724404 48724425 TGGAATAGATTCTCTTCTCCGA 58 48724091 48724345 TAGCTCACATCTGATAGGCA 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000081677 2 1 2 80 9 55390754 55390772 TACAACGGTTTCTGCATGC 59 55389600 55390711 ATAACCAGCATCACATCTGC 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000072033 3 1 2 85 9 10021813 10021831 TGCTTACTACGGACAGACC 59 10021880 10022886 CATTTGCTTCAGTTGCCTG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577 2 1 2 80 13 47305416 47305588 GAATGTGTAATTGCCACATGTG 59 47305357 47305376 TGTGTACAGGTCTTCCTCTC 59 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045 1 1 2 80 8 55109071 55110284 GGAGACACAGATGAGAGCA 59 55109009 55109027 GTCATGACCACTGAAGCTG 59 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000083438 2 1 2 87 11 53202291 53202312 CCGGAAATGTGTATCTATTCCA 58 53202360 53214544 CTGGAAAGGACCTTTGCTG 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000019040 3 1 4 92 17 27506850 27506871 AGAAGGTAGAAATGGGTACCTC 59 27506921 27510667 TCGGAGAAGCTTTATTGATCTG 58 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000077994 3 1 4 80 17 27507192 27510660 GCAGAGTAGAAGAGATAAAGCT 58 27510701 27510719 TACTCATCAGATCCCACCG 58 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008301 1 1 4 80 3 63186991 63187012 CAAAGGTATCATTGGCTATGTC 57 63139892 63186951 TCATTGAATCTTCGGTCCTG 58 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008301 3 1 4 80 3 63186996 63187014 GGCAAAGGTATCATTGGCT 58 63139894 63186952 ATTGAATCTTCGGTCCTGG 57 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642 3 1 2 109 20 12075254 12075272 TGTACATCAGCACCTCACC 59 12075345 12076501 TCTATCAGCCGGTTCTGTC 59 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 2 2 2 80 9 64520280 64520301 CAGTAGAGATTGCACAAGATGG 59 64513779 64520241 CAGAATAAGGCTCTGGAACTG 59 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 1 2 2 80 6 23527230 23527248 TTAAAGTTACGGGACCAGC 58 23510535 23527186 GGCCATAACCTCTTCACAG 58 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 2 2 2 80 6 23527228 23527247 TAAAGTTACGGGACCAGCTG 60 23510534 23527186 TGGCCATAACCTCTTCACAG 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503 1 1 4 110 5 115076524 115203046 CTTAACTGCATTGCACAGG 57 115076432 115076450 AAAGGCAGGAAAGAGTCTC 57 NA Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 2 2 2 80 2 197752729 197754353 GAGGAGAAGCAGGATACAC 57 197754396 197754415 TGGATATTTGGCCTTTAGCT 57 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102 3 1 2 150 17 48444481 48562772 AAAGGTCCTCCAGAAGCTG 59 48394097 48399200 CTCCTGCATACCTTTGATTGC 60 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699 2 1 2 115 19 25051388 25051407 TAATAACCGAACCCAGTGTG 58 25051485 25054730 GCTCCACTTTGTAAGGGAC 58 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 2 2 2 98 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745381 107754090 CAGGATGAAGGGTTGTGGT 60 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 3 2 2 100 3 107754152 107754173 CATTGACCTCGTGATTGATGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091 1 1 2 80 3 107564482 107565840 CAGTCAAATCGAGCAGTGAG 59 107564421 107564442 CTGACCATCCAATACAAAGCTC 60 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469 3 2 3 81 9 10641919 10642102 GAGCTTGAGTTCAAGAGGC 59 10642146 10642165 TAAACTTGTTGCAAGGCAGG 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 1 2 2 82 20 9617957 9618332 ACATCAAATGCAGACTCGC 59 9618376 9618396 CATCACAAAGGCAAAGATGAC 58 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 3 2 2 80 15 56764460 56764480 TTTGCTATCTACCTACCACCC 59 56764519 56767192 TTCTGTGCAAGTTAAACCAGAC 60 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000079688 2 1 5 84 1 20903358 20916146 GACGGAAAGAGTTCACATGAG 59 20903294 20903312 CTGTGATTACGCTTTCGCC 60 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 2 3 3 80 20 2096798 2096817 CCAGAGAAGAAGGTGGAGTG 60 2096857 2097248 AATACAGCAGCATTTCGATGAG 60 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201 3 1 3 150 4 118486200 118500910 AGAAAGACCAGAACGTAGGC 60 118484941 118484959 TCTATGTCGCCTTGGAGAC 59 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000091060 3 1 2 81 9 67774216 67779929 ATTCAATAACGGAGGAGAACTC 58 67779969 67779989 ACAAGAAATCTGTACACCTCC 58 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000064637 1 1 2 80 20 12885581 12885599 CACTGTTCCCTTGTCATGG 59 12882703 12885540 TGATCTTCAAACCATCCTTGAC 59 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024 2 1 3 80 2 264938048 264938068 GCTTGGATTTAGTATCAGCGG 59 264923780 264938011 CTAGTAACAAAGATACCCTTGTCG 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860 1 1 2 80 2 231871187 231871205 GGCAGTAATGAATGCACAG 57 231870994 231871143 CTCTGCTCATGATCACCAG 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 2 1 5 81 1 80530861 80530912 GATAGAGGGTCAGCAGAGC 59 80530798 80530816 AGTCCCATACGTTGTCCTC 59 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000089251 2 1 2 114 5 76728268 76753016 ATAGCAGTCGGTTTAAAGCG 59 76717954 76728194 TGTCATTCCCATTAGCATACAC 59 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 1 2 3 80 13 50484201 50484219 CCATTTCTTCTGGGCACTC 59 50482135 50484157 ATCACTGCATACCTGAGGA 58 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000000053 2 1 2 80 13 89988833 89988852 ATCTTCCTCAGATGTTCGGG 59 89988892 89990372 TAAGACCTGTTGATGAACTGGA 59 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000002089 1 1 2 80 11 64828797 64830866 CTGTCAAATTCCGACGCTG 60 64828735 64828753 CCACAGGCCCTATGTAGAG 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 3 1 2 162 2 235311945 235311963 TAGACACGTACCTCAACGC 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 1 2 4 97 14 22379888 22529789 GGTTCTTTGGAAATTTGATGGC 59 22529847 22532486 TTGGATGACCAAGGAGGTC 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000085301 2 1 3 85 2 236625839 236626537 GTGTGAGTTGCAAGATGTCC 60 236627939 236627959 CATACTCAGAGTCGATCCCAG 60 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000043448 2 1 2 83 10 65016084 65016164 GCCCAGAATCAGCAAACTC 59 65013845 65013863 TGATGGTATCGATGAGGGC 59 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919 2 1 2 115 10 65021766 65023167 GCTACCAAAGAAGCTGCTG 59 65021078 65021097 TTGAAGATCGCTGAGGACAG 60 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000080788,ENSRNOT00000079513 1 2 4 114 4 152487487 152495350 ACCCTCAAGTATGGCACAG 59 152485519 152485537 TACAGTCGGCTGTATTCCC 59 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 2 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 1 2 2 80 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556152 22557557 GAAGTCTTCAATATCCTTGGGC 59 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002 3 1 2 80 9 60921465 60921483 ACTGGAAGCATCAATGCAG 59 60921524 60922007 TCTGATTTATTAACCTGCTCCC 58 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 2 3 3 80 4 7133354 7133592 ACCATCAGCACTTACAGGA 58 7133636 7133654 CCTTGATCTCTGGGTAGCA 59 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399 1 1 3 80 4 7123711 7123729 GATGCTGTCACAGAACCTC 58 7123772 7126048 GGTCAGCAAATCCACTTCTG 59 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 2 2 2 80 3 47475066 47475084 GCATATGAAGCCTTCCGAC 59 47475125 47488365 TTCATAGTTCTCAGTCTTCTGC 58 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623 3 1 2 83 9 14545241 14550054 AAGTCAACGATTGGATGCG 59 14545176 14545195 GTCTGTTGACTCAAACACCT 58 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000077259 3 1 3 170 15 51798778 51799356 CCAGGATTCCATTTAAGATCGG 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450 1 1 2 85 15 52376449 52376467 ACCAACTTGAAGTACTGGG 57 52375428 52376402 CTACTGTATCCAATGGAGAGG 57 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000036233 3 1 5 80 5 101663960 101670852 TAGTACAGGAGCAGGAGAC 58 101685842 101685861 TCGTACAAGTGGCATATCTC 57 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421 2 2 4 100 10 1312751 1312769 GACGGATTACTGTGCAGAC 58 1309762 1312687 TATCTGAGGCACTTCCTGC 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 1 2 8 112 13 68703050 68707607 GATGACCCAGATTATGATGCA 58 68707681 68707699 GGCTTTAATGGTGGTTCCA 58 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645 1 1 2 80 4 136816372 136816397 GCATCTATTTCCAAAGGAACG 58 136844766 136844787 GCATATCTTAAGGCTACCATCC 59 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000089126 1 1 2 83 8 65733629 65736426 AACCACTCACTTTCAGCAG 58 65736472 65736491 GGATACTTTCTCCACATCCC 58 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813 1 1 2 80 14 112768811 112768829 CCTATGTTAGGCAGCTGGA 59 112730123 112768767 TTCTATTCTGGGTGGCCTG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000066137 1 1 2 88 10 105752611 105752629 TTTAAGTACAGCCCTGGGC 60 105751467 105752560 AGCTCAATCCTCTGTTCCTC 59 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 3 2 2 109 4 7109883 7110526 GATAGAACAACTGCAGGCTC 59 7109793 7109812 GAGAGTGTGGAATGAATGGG 58 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 3 3 3 84 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752005 50754084 GTCCCATTGATCTTCTCTATGC 59 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176 2 1 2 88 1 101368290 101368386 CGATATGATGAGAGGCCGG 60 101368220 101368238 TCTCGGCTTCTTTCTCTGC 60 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000084632 2 2 5 112 X 63807673 63807693 GTATCTCTGAAACTGACGGTG 59 63807030 63807602 GTTATTAATCTTGCGGGTCCTC 59 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000026665 1 1 2 80 1 166781357 166796991 AGTCCATTCTTTGGAAGTCCT 59 166797033 166797051 CAGCCTTTGAAACTTGCAC 58 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962 2 1 5 81 13 77940672 77942278 TAATGGCAATCGAAGGCAG 58 77942323 77942341 CATCACGCAACATTCTCCA 59 NA Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 1 2 2 80 5 67900755 67985209 TTTGTTGAGCTTGTCATCATGG 60 67900696 67900716 GATATGCACCTGAAAGGTGTC 59 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 1 1 2 80 X 63274098 63275062 AAGAAAGCAGCAAAGGTCC 59 63274036 63274055 TCTTCCTCCTGTTGACAAGG 59 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000044095 2 1 2 81 13 34241205 34245704 ACTGGTAAGACGTTCCAGG 59 34241142 34241164 GATGAAAGTAGAGATGTGAAGGG 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000020414 2 1 2 80 9 78341895 78341914 GTCTTCTGGTATTCCAGCCA 60 78332807 78341855 CAGGCTTCATGCTTTATAGAGG 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870 3 1 2 80 9 78349055 78350232 TTCTGTAGTGGTTGTATAAGCG 58 78348996 78349015 CTTGAGGTCTAGGATCCAGG 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000078816 3 2 3 80 8 49014497 49014518 GCTTGAGAGGAGATATCATTCG 59 49010349 49014457 GAGCGGTAAACCTCTTTGAG 59 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174 3 1 2 100 X 84821724 84821745 TTGATGTGATCGTAATAGGGAC 58 84768455 84796562 GTAGCTTCTTGAATCAACATGC 58 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 2 2 2 81 1 185478309 185479015 GACCCAAGATCATCAAGTCCA 60 185479056 185479076 GGAACATTAAGGTTCCTCCGA 60 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060 2 1 2 134 14 81819837 81822914 CCGAACAACAGGTCTTCAC 59 81828396 81828414 CTTCAGGAGGCTCAGAGTG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000089234 3 1 5 82 1 79704027 79704046 ATTCTACACCCTACGCACTC 59 79699342 79703982 GTGTCACAGGCTTGTTCAC 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 1 2 2 80 9 14499402 14500084 GTACATCTCCGAGGGTTGG 60 14499340 14499359 CACTTTCCATGCCAGATGTG 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 3 4 5 89 2 30666639 30667390 GATCTAGCTCGGGAAGTCTG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000008150 1 1 2 80 13 90461170 90465658 GCTGCCAGTCTTCAATTAGTG 60 90461110 90461129 CCGTCAATACCCATTTCAGG 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160 3 1 4 80 5 104673447 104673468 TGGGTTTCTATACTTGCAATGC 59 104673508 104698079 GTGGCTTTCCTGCTAATGTG 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 3 4 6 80 14 44526461 44526480 TGGGTCTCTGGTTGAAATCC 60 44526523 44526855 GAACAAGCAACACCTGTCC 59 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 2 1 1 61 1 221538175 221538193 CAACTCTGTGGGAGTGGAG 60 221540475 221540493 AGCTGTTTCTGAGACTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 3 2 2 80 3 148668062 148669374 GTCAACAAGATCTACCTGCAC 59 148669416 148669434 GTGCTCCTGATCCTCTTCC 60 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551 2 1 4 87 2 78250745 78251287 CTGAAAGCAGTACTGTTTGC 58 78251336 78251355 GAATGGACTTGACTTTGCTG 57 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000036359 3 1 2 80 9 78617878 78617898 CCAGACGTGTTTCAGAATGAC 60 78612907 78617836 CACTACCAGCAGTACCCTG 60 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 1 2 2 80 13 98446634 98446652 AAGGCTCTTTGTCATCAGG 57 98446695 98447060 GAGAATCAGAGTCCTCTCCA 58 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000009552 1 1 2 80 3 92927037 92927055 TGGTGTTCAGATTTCACGT 57 92924104 92926994 TGAGTGCATCTTCATGACTG 58 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013297 2 1 2 80 15 89297212 89297232 GTCCTGTACCTTCAGGTACTG 60 89288653 89297172 TAGATGTAGACAACACCTGGG 59 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718,ENSRNOT00000091144 2 2 2 80 5 99177126 99177144 AACCTGGACACTTTGAAGG 58 99177190 99177729 TCTGAGTTTGCACCTACTG 57 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 1 2 4 81 5 78371220 78371239 AGACATGATGGATGGACGAG 59 78370613 78371176 GCTCATCACAGAGACCCTG 60 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 1 2 2 80 15 10463899 10463918 TTTGGGTTATGGACTCTCAG 57 10463961 10464983 GCCATGCATCTTAAAGCAC 58 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000082160 1 1 2 80 10 83110256 83110275 AAGTGAGATTCAAGCAGACC 58 83107044 83109537 ACAACCTCTCCTTCTCTTCTC 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000002864 1 1 2 81 9 61000670 61001598 TGGTAGAGGGTATAGAAGTTGAC 59 61000611 61000632 CCACTGCTCTGATAGATGAGAG 60 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 2 2 2 80 18 58415752 58418513 TCACTGCAGATCTTACTTGG 57 58415691 58415710 ATGAAGATGATGGTGAGGAC 57 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 2 1 1 61 8 67232095 67232114 TATGGCCTTCGTCCTTTCTG 60 67219112 67219130 GTTCTGCTCTTCATCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 3 1 2 81 12 11244020 11244038 TGAGGCAGTATACAAGCCC 59 11244080 11245376 TCTTGTTCATCTTCTTCGTTGG 59 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000036051 2 1 2 158 8 48422040 48422058 GTACCTCCTACACCGTGAC 59 48422178 48426008 GGGCACTCTTTGAATTCTTGG 60 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 3 4 7 83 15 5415191 5508852 GGTTTGAACTACAGGCTGAG 59 5415127 5415149 GGTCATCTTATGCATATCCATCG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000072624 3 1 2 174 4 126617846 126619418 GCATATTGAAAGCAATGCACAC 60 126617693 126617711 TGGAGAACATTCTCGGTCG 60 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845 1 1 2 82 3 177226656 177229045 ATGTCATCCTCAGGCACAC 60 177229091 177229109 CAAGACCAGGGTATCAGCC 60 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000081787 3 1 3 80 3 8636130 8636230 GCAGTACTATTTGGTTCCCG 59 8636273 8636291 CCTTCCTCCTCTTCATCGT 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 3 2 3 84 19 49462559 49462580 GGAAGTGATTCTGCTATGTGAG 59 49465033 49469933 CCGATGAAATTGAGTATACATGAGG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 1 5 5 81 1 257590070 257746039 TCTCTACATCTTTCAGAAGGGTG 60 257746075 257746098 GTCAGGTCTGTAACATGTATATGC 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 1 5 5 81 1 257721363 257746039 TCTCTACATCTTTCAGAAGGGTG 60 257746075 257746098 GTCAGGTCTGTAACATGTATATGC 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953 3 1 4 165 4 85588616 85588634 GTGAGGTAGCAGAGATGCA 59 85588763 85597868 ATTTGGAAAGCCGCAACTC 60 NA InUTR Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000064332 3 1 2 82 1 78715280 78715619 TTGCTACCTCGTATGAGCTC 59 78715802 78715820 GTCCATGGTTGCATTGCTC 60 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000037276 3 1 2 80 8 97568126 97568574 AACTGGTCTCAGTATTCCACG 60 97568616 97568634 CTCATTGAAGAGCTCGGGA 59 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000091493 1 1 2 108 3 123622764 123624296 TCCTCACTGTGTTCTATCCC 59 123622675 123622693 TCTACTTGGCACAAGAGGA 58 NA Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 1 2 2 80 1 80955067 80955959 GCTCTCAGGAAGAAGGAGTG 60 80956002 80956020 AGTTCCTCAGGACAAAGGG 59 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 1 1 2 80 13 96356703 96379664 ATTTCATTGCTGAGGTAGAGG 58 96379706 96379724 GTACTGTGGTCATCACTGG 58 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000091424 1 1 2 80 18 3996045 4031688 CAATACAGAAATCATAGCCCAC 57 4033838 4033857 CTCCTCGAATGTCATCATGG 58 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000021193 3 1 2 126 4 179305720 179306961 CCAGGACTGCAGTAATGGA 59 179298017 179305631 GAGATCTTTGGCCCTAAACG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000090937 2 1 8 81 20 1966125 1966144 AGAAGATCGGCTACTACGAC 59 1962820 1966086 GGAGTTCTGGATATAACAATCCAC 59 NA InUTR Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000082723 2 1 5 80 4 140514165 140514185 ATCGATATCATCACAGCCCTC 60 140514223 140515353 CCTCAGTTCTAAATACAGGTCCA 60 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000041130 3 1 5 184 4 140396761 140401964 ATTACTTGGCAGCAGAGGT 59 140402111 140409762 GACATAGGAGTTCCTTGGGA 59 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130 2 3 5 104 4 140450527 140450548 ACCAAAGATAGAGGCTATGGAG 59 140463480 140464552 TTCAAGCTCCTCTGTGGAG 59 NA Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 2 2 2 80 X 68630150 68631792 TGTCACTTGCATTGATGCT 58 68631836 68631854 CGAACACTTCTGCAAACTC 57 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138 3 1 2 80 5 171268424 171268445 GAACTCAAGTCTGTTTATGTGG 57 171268485 171268505 TACGTTGTACTTGTTGGTGG 58 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264 2 1 3 86 18 59996894 59997973 CAGCATGTGTAAAGATTAGTGC 58 59996829 59996847 CTTGCCTTCGTAACCTGTG 59 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 3 2 2 80 X 118455764 118456312 ATAGCAGATGAAGGAAGCC 57 118455702 118455720 AGAGCAGACCAAATACTGC 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000086441 2 1 4 80 1 50933160 50933179 CGGTGGCTACTAAAGTTCGA 60 50933222 50933511 CCAAATTGACTCGGTCTGC 59 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 1 2 2 80 X 115633335 115633354 AACACCTTCTGTCCCAAGAG 60 115633006 115633292 GTCAGCATGACGTTCTGTG 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 3 3 3 91 7 99155552 99155725 GGAATATGGTGTGATCTTTGCC 60 99155775 99155795 TCTTTCCCATCCCAAAGTCTC 60 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000042594 3 1 3 109 6 107295443 107315143 AAAGATTGAAAGCTACGGGA 57 107293240 107293259 TGTCTGGTCAACTATGAGGT 58 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045 2 1 2 99 10 61209961 61209979 TCGGTGTACACCACTTTCC 60 61207915 61209900 CAATATGTCGCTTTCTCTGCT 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899 3 1 2 81 1 99452257 99455724 AGTCCTGTTTCGAGGATGG 59 99455769 99455787 CCCACCAACACCATATTCC 58 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000083127 2 1 2 80 4 130332292 130342634 AAGCTTGTATCTCAGTTCTGC 59 130342674 130342694 AAGATGCGTGATGTCATAGTG 59 NA Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000009879 1 1 2 164 5 138246015 138246128 AGGTCAGAGCTGATCAGGA 60 138246254 138250950 TGAGAGCATAGATCTCTGCTC 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164 1 1 4 85 1 265552643 265573059 ATGACCAGCTTACGGACAG 60 265552576 265552594 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000020002 3 1 2 85 1 141565952 141565971 CTACTGTCTACTGCAATGCC 59 141565883 141565902 GTTCACCACAGTGCTTTCC 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000077952 3 1 2 86 1 81244832 81245478 CACATAGCTGCCTGTTATCG 59 81245527 81245545 ATGTCCTTGAGCTCAGTCC 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093 3 1 2 80 10 46611417 46613762 AAACAGAGCTCAGAAATGAGAG 59 46611358 46611376 CATTCCTTGGGTCATGAGC 59 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000004716 3 1 2 83 13 92336070 92337521 GATTCAAGCCAAACACTTCG 58 92337567 92337585 TAGTTGAGTCCTCTCAGGC 58 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 2 2 2 80 10 71434089 71434107 CCTCCTACCTCATGGAACC 59 71431453 71434046 TAGTGAAACACTGCAAGCAC 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000012943 3 1 2 80 7 143518095 143518113 GCGGTATTTATGGCAGCTC 59 143518030 143518051 GATCCTGTCTTGTTCGTGG 58 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 1 1 1 60 20 2484646 2484665 CTGAATACTGGGAGAAGGGA 58 2484978 2484996 CAGGGTGTGATATTCCGTC 58 NA DesignNoJunction Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246 2 2 5 80 X 71310533 71310782 TTCTGCAAGAAGGAGATCTGG 60 71310473 71310492 TGCAGAACTCTTGGAAGGAG 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076709 3 1 5 80 X 71310534 71311523 CACTGAGAGCAGGAGATCTG 60 71310473 71310492 TGCAGAACTCTTGGAAGGAG 60 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236 3 1 2 80 17 68487221 68487242 CAGATTCACTAGCTACAGATGC 59 68487280 68488847 CAAAGGTGTTGGTGATATCTGG 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000006492 2 1 3 80 6 108838024 108838043 ACCTCCAAATGAAGAGATGC 58 108838650 108838833 TCTGGGTCTTCTGACATCTC 59 NA Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 1 1 1 80 5 103230256 103230274 CTGCCTGGAGAAACTTCCA 60 103229270 103229288 AGGATGTCCTTTAGTGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 3 2 2 81 3 71294225 71294244 CTTGGAAACCCACATGAGTG 59 71291323 71294184 TCAATAACACCCAGCATATGTG 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203 1 1 2 80 3 57021832 57021851 TCGAATACACAAAGAGCTGG 58 57020984 57021792 GGATATTTCGTATCTGTGTCCA 58 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270 1 1 2 80 7 97900334 97937639 AAGAAGCTATGGCAGTGGT 59 97900272 97900293 CCCTCTGAATTTCTTGAGAGTG 59 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 1 2 2 80 5 160031934 160033816 TGGGAATAAGATTAAGGTGGAC 58 160031875 160031893 TCTTGACCAGACTTCTCCA 58 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 3 2 2 114 6 109097473 109103609 CAAGTACACTCAGGCTGAG 58 109097377 109097395 CATAAAGCGGACCTTGGAG 58 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467 1 1 2 80 9 82437590 82439336 GAAGTACTGTCTGACAGAAGTG 59 82439377 82439395 GCTACGGAAGGTGAATGTG 59 NA Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 3 2 2 84 X 68779569 68779978 AAATCTACCAGCTCCTCCC 59 68780026 68780044 ACTTCTCGGTTCTCGTCAG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 1 2 6 80 4 154715192 154716008 TTCACTCCCACCTGTTGTC 60 154716051 154716070 CTGCCATTTCTTCCTTGCTC 60 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000074230,ENSRNOT00000071067 1 2 3 80 12 24595376 24599715 AATACACGTCTCCAGGCTC 59 24595314 24595334 AGGAAGAAGGAATTCAGAGCT 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000020427 3 1 3 87 16 3674864 3674884 GGAATGCAACAAACTAGAAGC 58 3679148 3679174 GGGAATGTTATGACTTACTGGA 58 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000047118 1 2 3 80 16 3568404 3568422 AGCAACACATTGAAGTGCT 58 3568466 3618450 GTGCATCTACCTCAGTCTG 57 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900 1 1 3 80 X 70322904 70322924 GTCCAAAGGACTAGAACTCCT 59 70322964 70323332 TCCAAATCTTCATTTCGGCTG 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000086036 1 1 3 80 10 65587055 65587757 GCTTCTGGACAACTGTCAC 59 65587800 65587819 GAGCAATATCCGACAACTCC 59 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000087067 1 1 2 102 1 154054143 154054162 CAATGCCTATGTGTTTCCCG 60 154054227 154056364 ATAGTCGAGGACCTCTGCT 60 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000002834 2 1 2 103 14 14953672 14953690 GCACAGACCACTGAATCTG 59 14951619 14951639 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481 3 1 2 84 7 117131459 117133508 TCACCTTTGCAATCGATGG 59 117131393 117131413 GCTCATAGTAGATGGAACCCA 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008 3 2 3 80 3 113420706 113421585 GAACAAGAATTGGCAGACTG 57 113420645 113420664 CTGTAGAATCCTAGTGTGGC 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000084151 2 1 2 86 10 4568045 4571097 GCCTTTACAGTTTGATCTATGC 58 4571143 4571162 TCAGGACTATGAGCAAAGGA 58 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 1 2 2 80 8 70624061 70624522 CCATAAAGAGCAACGGGAG 58 70624566 70624584 AATCGGAGTGGACAATGAC 58 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016 3 1 2 80 8 70619759 70620370 CCTACTATACCAGCTCTGGA 58 70620413 70620431 GGGACTGTACTGCAAACTC 58 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 2 3 3 89 7 123134430 123134449 ATCCTCACAGTGAAAGGTGG 60 123134501 123135291 AATTGTTGCCATGCCAGTG 60 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000041988 2 1 2 82 4 82816414 82816434 AGCTAGAGGACAGTTACAGTG 59 82816475 82820399 TGTAAGTTCACTGTAACTGTCC 58 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000086502 2 1 2 80 15 14622494 14622512 GACTCCTCATCCTCAGCAG 59 14622428 14622453 AATATACACGACAGTAGCCAGG 60 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000090680 2 1 2 80 3 112713639 112714621 AGGACAAGGAGCAAGTAGG 59 112713577 112713595 TGCTGAATTCTGGAGGGAG 59 NA Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000073435 1 1 2 86 11 82871234 82871655 CGTCAGAAAGTGACTCAGAC 58 82871870 82871888 TGACTGGCTCATCTAGCTG 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097 2 1 2 80 8 111840529 111840550 CACCAGAAATATACAGTGACAC 57 111839430 111840489 TTTCTTTATCCTTCCGGCTC 58 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374 1 1 2 114 7 143162615 143162633 GTGATGAACTCCAAGCTGG 59 143161420 143161828 TGCTGACACAGACATTCAC 58 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265 1 1 2 96 6 110671811 110671829 GTCCAGGATCTGGTGACTC 59 110666924 110671752 AAGAAAGCATCCAGTGTCTG 58 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 2 2 2 92 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952980 47958504 CTGGATTTGAGTGGTGCAC 59 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000089042 3 1 2 87 2 189377424 189383407 ATGGAACAAGTGCATGGAG 58 189375609 189375630 GCAGTAAAGATCTTGGTCTCAG 59 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036 1 1 2 81 15 103885129 103886107 AGGAGTTGCAAGGGTACTG 59 103885066 103885085 ACGATTGCCTTCGTTAAGGA 60 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036 2 1 2 82 15 103885129 103886107 AGGAGTTGCAAGGGTACTG 59 103885065 103885084 CACGATTGCCTTCGTTAAGG 60 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000067333 3 2 3 81 7 82058614 82058634 TGCTCTCATCATTCTGAACTG 58 81992027 82058574 TACATAACTAGCTCGCTTACTG 58 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154 3 1 2 80 14 92482605 92484945 AACAGAAGAGTTCTTCTGACC 58 92478974 92478992 GCCAAGGGATGATTTCCTG 59 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 1 1 3 60 10 13289722 13289740 CTGTCTGTCTGCTCTGGAG 60 13306121 13306139 CACTTAGAAGCTGCAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632 1 1 2 80 7 117488984 117489003 TTTCCTCATCCAGTACAACG 58 117489288 117489613 TTAGAAGACACAACCAGCAG 58 NA Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 1 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981794 CCCACAGAACATAACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304 2 2 3 159 14 17548618 17551322 GATGGATTTGCTGAGAGGT 57 17551444 17552988 CAGCATTGGTATCCTGTACC 58 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237 1 1 2 80 9 67702977 67702995 GGTGGAACTCATGTACCCA 59 67703038 67703502 CATGGTTCTGGATCGATGAC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 2 3 4 80 8 70175529 70175969 TATGTGAACGTGTTAGACTCC 58 70176008 70176029 AAGTTCAATGTAGAAGTCCTCG 58 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000078424 1 1 2 82 15 109394027 109394046 AACTATATTGGAGCCCAGGA 58 109390019 109393983 GTTAGAAATCCCAGTTCCGG 58 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 2 2 2 80 19 39386429 39389316 CAATTCATGCCAAAGTTCCTG 59 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 1 3 3 80 8 72615749 72615769 GCTGTGAGAAGAATAAGTGGT 58 72608745 72615709 GACTTAGTAAAGTCTGGGTGG 58 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000041844 3 1 3 97 11 67642223 67642241 AACAAGATCCGGGTGAAGG 60 67642299 67644548 TTTCTAGGTTCAAGCTTCTTGC 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354 2 1 4 105 17 70705263 70705281 CATGTGGCTTCCACTTCTG 59 70707481 70709775 AGACAGTTCGTAGACAGGC 59 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000078657 1 1 2 86 1 220471313 220471332 TAGGGCTATTGGTCTTCCCT 60 220471509 220471529 ATTGAGGTCTTTCCGTGGG 60 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000078657 3 1 2 92 1 220471307 220471326 AGAAGCTAGGGCTATTGGTC 59 220471509 220471529 ATTGAGGTCTTTCCGTGGG 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000035821 1 1 4 80 2 57876738 57933371 GCTGTCATTGTGGGAATGG 59 57876676 57876697 AGTCATGTAATAGACCACAGCT 59 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000025013 3 1 2 81 19 29599632 29642351 ATGAGGAGCAGACAAACCC 60 29599569 29599587 AAGTCGGCTTGTTATCGCT 60 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 3 2 3 84 20 3291928 3295546 ATCGGCTGTGTAGGTTTCC 60 3291862 3291880 TTCTGGAGACACTCACCAC 59 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 3 2 2 84 5 157750887 157750905 GAGTGAGGGCAGCTATCTG 60 157749862 157750842 GATGGAGATAATGGTGTCAAGC 59 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 1 2 2 80 8 5994195 5994413 TGTAACGGTTTCAGCAACC 59 5994455 5994475 ACTATACCACCAACAAAGCTG 58 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 2 4 8 86 4 8223894 8223913 CAACATATTGACTGCATGGG 57 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000066250 2 1 3 146 10 47065886 47095445 TCCTCTAGGAAGGGTATGCT 59 47095554 47095572 AGCATTCCTCAGGTAAGCT 58 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881 3 1 6 81 17 77211785 77211805 TGTATGGAGATCACAGGACAG 59 77211848 77213271 ATCAAGGACTGCCTACCTG 59 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837 1 1 2 90 7 123101160 123101807 TGGTGTAGCTATCGGAAGAC 59 123100587 123100605 TATGCGAACCAGGGTACAG 59 NA Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 1 1 1 61 7 123284469 123284487 AACTACAAGCAGCTTCGGA 59 123283093 123283111 GAGATGCCTCTGTTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 3 1 1 62 7 123284469 123284487 AACTACAAGCAGCTTCGGA 59 123283092 123283110 AGAGATGCCTCTGTTGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 1 2 2 80 8 48438450 48438553 TGAGCTGAGCAAGACAGAG 59 48438596 48438615 TTCTGTAATGCTGGTGGAGG 60 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215 2 1 2 141 6 111176931 111180589 GGAAGCCTGTTCTCTATTCC 58 111181826 111182326 TGAAATTCCTCGGAGAACTG 58 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 2 2 2 80 8 117269290 117269676 CCTTCAAGACATTTCGTCCTG 59 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 1 2 2 91 1 204761787 204761805 GAAGATCGGTGTGAAACGG 59 204718391 204761732 AGGTCTGACAGTTCTGTGC 60 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 2 2 2 93 1 204761787 204761805 GAAGATCGGTGTGAAACGG 59 204718389 204761731 GAAGGTCTGACAGTTCTGTG 58 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 1 3 4 80 X 70459694 70460241 TCATCTCCAAGGTGATTCCAG 60 70459634 70459656 CATCATTCACAGCTAGAACTTGG 60 NA InUTR Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000092180 2 1 7 81 1 102924212 102931705 TGTATCTGTCAACATGAACACC 59 102931745 102931765 CAGATCTTTCTGGATGTTCCA 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000083079 1 1 7 80 1 102929717 102929736 CTCTGAAGTCACTGAACCCA 59 102929779 102930386 CTCATAGCCACTGCTTGTG 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 1 2 4 80 7 142036960 142036978 TTGCCCTCATCCCTATCCT 60 142035033 142036916 CGATCCTCCAGCCTATTCC 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859 2 1 3 80 9 90891943 90898155 AACGATTCCATTGTGACACC 59 90898196 90898216 GAGACTAGCTCCATCTTCAGG 60 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000077962 1 2 3 171 1 260552342 260553753 AGAGCATCAGGAAAGAGCC 60 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 2 2 2 89 17 80655174 80662341 CAAAGAGTTTAGCCTGCGG 59 80655103 80655124 GATAATTAGCAGGGTAGTTGGG 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 1 5 5 80 8 73060934 73060953 GACACCACCATTATGTTTGC 58 73058143 73060891 AATGTTCTCCCTGTGATCG 57 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109 2 1 4 85 5 141058871 141058889 AGTATGGCTGTTAGCCCTG 59 141057085 141057874 ATTCCTTCAATTCCGGGCA 60 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000081482 3 1 4 87 5 141130132 141130150 AGGAGATCAACACCAAGGG 59 141126150 141130084 TCTGTAAGATCTGTCTTAGCCT 58 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 2 2 2 82 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117908 164117927 GACAATGGCATTACCACTCC 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 1 2 2 80 2 248723398 248724220 GATTGGCAAGGGTACAGGA 59 248724264 248724282 GAGCTGCTCATTGTTCTCC 59 NA Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 3 1 1 103 3 11101670 11101688 GATCGTTGGCTGGATTCAG 59 11088899 11088918 TCTTTCCTTCCTGGAGATCG 59 NA DesignNoJunction Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000080567 2 1 2 90 12 12649924 12649942 CAGACACATCGAACCTGAG 58 12652549 12652799 ATGAGGTAAACTTCCGTAGTG 58 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767 1 1 2 80 15 23576467 23576487 CCAGTGTAATACCCTGAATCC 58 23572678 23576182 GGAAGCACAAGCTTTAGGG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323 2 1 3 87 12 11605150 11605255 TAAAGCTCCTGGTGCTCAG 59 11605081 11605099 CATGGCGTACTTCACAAGC 60 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000080686 1 1 2 107 5 171458880 171458898 CATCAGCCTTCAGTGTCAG 58 171457333 171458809 GCTTTCCAATTGTTGAGCG 58 NA Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 1 2 2 80 2 197740141 197747746 TACTCACTGGTGAGACATGG 59 197747789 197747807 CCAGGTTCTTGGCAATTCG 60 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015 2 1 2 80 1 53542838 53543623 TGTGGCTGCAGAATATTCC 58 53543664 53543685 TCTCATCTTCCTTTGTAGTGTC 58 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000050994 2 1 2 91 4 78754792 78759387 CACACTGAGCAATCAGAGAC 59 78754720 78754738 TTGATGTGTTGACCCTGCT 60 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000050994 3 1 2 92 4 78754792 78759387 CACACTGAGCAATCAGAGAC 59 78754719 78754737 TTTGATGTGTTGACCCTGC 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 2 5 5 81 19 43234682 43234701 AAAGTGATTGAGCAGATGGG 58 43234742 43237115 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069 2 1 3 137 13 79886886 79886904 CTCTTCTCGGTCGTACACC 60 79887004 79887938 ACGCAACTAAATTCCAAGCC 60 NA InUTR Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000013546 2 1 3 80 3 11234895 11234913 AAGTCCTGACCAAGAAGCA 59 11234956 11235410 CTTTGACAGGTACCTGAGCA 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566 1 1 7 80 9 43751447 43761318 ACTGCAGGAGCATAAATTGC 59 43761361 43761379 ACCTTCTGGCCTTTGAGAG 59 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 2 2 2 80 15 28696609 28696630 CGGAGGAAATGACAATTACCTG 60 28696669 28701734 CTTGGTGTATGGAATGTCTCG 59 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571 1 1 2 95 7 34781311 34789227 TGTGTCAGATGGAGATGGT 58 34780833 34780851 GGAGGGTCTGTTTGAACTC 58 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 1 2 2 88 6 26572307 26572325 TACTGCTGTTCAGTCTGCC 60 26573758 26574105 ACACTGGACCTTGTAGATGG 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000090218 1 1 2 98 4 152960564 152960582 AAAGTATGACTGGTCGGGC 60 152960644 152966544 ACCCAGTCTACCTTGTCCT 60 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155 1 1 2 93 3 112118677 112122235 AGGATGTTGGTTGTAACAGGT 60 112117916 112117934 AACTGGGAAACCACATGGA 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 1 2 3 146 9 12477292 12581721 ACAGTTCCTACCGCATCAG 60 12581831 12581849 AGAACCTCTTTGCCTCCAC 60 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 2 2 2 81 14 21998355 21999127 CTGGCACAGAAACATCATCC 59 21997904 21997923 GGCTGTATGCATTCATCCTG 59 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960 3 1 2 83 7 124171693 124171714 ATAAGAGAAGGCAGAAGGCA 59 124162769 124162787 GATCCTTGTAGGCCAATCG 58 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000067665 2 1 2 84 10 84988060 84988080 AGAAGACATCATGCCTGAGAG 60 84988126 84989279 CTTGGTGATCTTGTGCCAG 59 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000024872 2 1 2 80 17 77605085 77607626 TGTGGCTACAAGGTACAGC 60 77607669 77607688 TGCTAGTTCAAGTTCCAGCA 60 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000090369 1 1 2 80 18 77317894 77317913 GGAGTTCGACTTCGATTTCC 59 77308476 77317854 GACGCATAACTGTAGTGTTCTG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 1 3 10 81 9 95246250 95298734 TGTCTCAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000050764 2 1 2 80 2 127754555 127754573 TGTCATTATGGCGAACCTG 58 127723188 127754511 CTGATCAATCTGCTTCCGG 58 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 1 3 3 80 X 128443670 128444870 GGGAATCTGTGGTAAGAACTG 59 128446753 128446773 CCATAGGATTCTGGAAGATGG 58 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 1 2 2 81 1 220075869 220075887 GATCTGGGCAATGTTCACG 59 220075736 220075824 TCACATCCCACACCTTCAG 59 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 2 2 2 82 1 220075869 220075887 GATCTGGGCAATGTTCACG 59 220075735 220075824 ATCACATCCCACACCTTCAG 60 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504 1 1 2 100 8 71016485 71016504 TGGCTTCAAGACTAACTCTC 57 71016564 71021701 GAACTGCAGCAAATGTATATCC 58 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504 2 1 2 101 8 71016484 71016504 CTGGCTTCAAGACTAACTCTC 58 71016564 71021701 GAACTGCAGCAAATGTATATCC 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991,ENSRNOT00000002705 3 2 5 80 14 22252219 22257634 AAACTCTAGGAAGACCCACC 59 22257675 22257695 CAATATCCCAATACGTTCGGA 58 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 2 2 2 82 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827602 8827620 AGAACATTGTTGCCCAGGT 60 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049 3 1 3 126 9 81615401 81628372 TCTTCCGAATCGGGTACAG 59 81628462 81628480 TTGAAGAGTCTGGGCTGAG 59 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899 3 1 2 130 5 160402308 160404845 GACATACACATAGCAGCCTC 58 160402114 160402132 TCCTTGAGGTACTGGAGAG 57 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 2 2 2 80 17 81995430 81995451 CAGGAGGAAATTCATCATCCAG 59 81995489 81999510 TGTCTATAGCAGATGATGGAGG 59 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 3 3 5 80 18 79424926 79426826 CTTCAAGAACATTGTGACACCT 59 79427268 79427287 CAGCTAAATCTGCTGAGGGA 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000078583,ENSRNOT00000091677 1 2 8 80 6 64794400 64794463 CTATGACGGCATGGTACAG 58 64794507 64794525 ACAATATTCTCCCGTGGGT 58 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 3 2 8 80 6 64838569 64838587 ATGCACAAACATCAGTGGG 59 64838630 64839963 GTGGAAGAATACCAGCTTCG 59 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257 1 1 4 151 8 53841512 53841533 CAGATATTGACCTTGCAAAGGA 59 53840170 53841400 TTCTACAGGACCCTTCTCG 58 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000064138 3 1 2 218 1 215135698 215135716 TGTCTGTTCCTGCTCTAGC 59 215143862 215143880 CAACCTGAAGAGCAACAGG 59 NA DesignNoJunction Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 2 2 2 103 10 15325080 15325099 AAGTATGCATGTGGAGAAGC 58 15324436 15325017 CCACAAAGTTCACACTATTCTC 57 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 3 3 4 84 7 28468857 28468875 ACTGACATGCCCAAGACTC 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000043199 3 1 2 80 4 99769252 99769274 GGACACTATAAACACCGAATGTC 60 99769311 99773157 TCTAAACTCTTGGCTAGAGCTG 60 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 1 1 4 82 9 81577344 81577362 GCTGACACATCTCCATCCT 59 81576565 81577299 AGTCATGGCCTTGATAGACC 59 NA InUTR Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000057798 1 1 2 90 10 48438213 48438231 GAGGAGGTTGCTGGAAGAG 60 48438285 48443974 GACAGAGACCATGGAGCTG 60 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822 1 1 2 80 9 92381007 92404987 CTCAATAGGAGGAAGAAGCTG 58 92380947 92380966 GAAGTATTGGCTCTGTCTGG 58 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000040759 3 1 4 85 16 6189095 6189350 TATGTCAGACCCTACACAACC 59 6189030 6189048 GTGACAGACTTCACAGCTG 59 NA Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000087404 3 1 2 114 10 107470418 107471084 TAGACTGAGGAAGATGGGC 58 107471162 107471180 TTGTTCCTCCTGAACTCGT 59 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 3 2 4 80 1 102824433 102824454 GGAGAAAGAAATCCATCAACCT 59 102824087 102824392 AACTTGGTCACTGCTTCTG 58 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715 2 1 2 100 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755998 78756365 GATGAAGACGTCTTCATGAGG 59 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000076578 2 1 2 90 13 82743493 82745707 TAGCACAATTGGATTGACACAG 59 82743424 82743442 CACATAGGCCTCGTAGCTC 60 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000057989 3 1 2 119 4 100424264 100424704 GCTTTGTCCTCAAAGAGCTG 60 100424164 100424182 CTCGACTGTAGTCCCACAC 60 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537 2 1 2 80 18 1204626 1204646 CTCTTCCAGAAGAACCCTCTG 60 1203168 1204584 GCAACTCCATAGCAGTTGC 60 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534 3 1 2 80 17 90196319 90196338 AGTTATACTGGGTCTGACGG 59 90193277 90196279 TGAACTTAGCATCAAAGCTTGG 60 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 3 2 2 80 13 99273802 99273823 TCTTAGAGAAGTTCTCCACCTG 59 99272351 99273761 CCAGGGAGAACTTCCTCTC 59 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 1 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473208 AGAGACTTCAACAGCTCCA 58 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033 2 1 2 80 17 67914226 67929971 GGGTCATAGAGAAGGAAGAAGG 60 67914167 67914189 TTCCTTCTAATCTCATCTCTGGG 59 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837,ENSRNOT00000071076 1 2 2 80 11 84522582 84522601 GGAAGGAAACCTCAGAAAGG 58 84527814 84533852 GCTATGATACCTGTCACAGTC 58 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 1 2 2 81 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797741 11797759 TCCATCTCATCGAAGAGGA 57 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000051362 1 1 2 80 18 1281373 1285573 GGAAATCTTCCAGTTGGTTCTG 60 1280838 1280859 AAGCCAACCTTCAATTCTTGAC 60 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779 3 1 2 80 9 93677322 93677341 TGTTGCTCGTAATAGAGCCT 59 93677383 93873183 GGTTTAACTCCCTTCCACTG 58 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657 1 1 2 85 4 22561734 22561752 TCGAAGATTCTGACCTGGC 60 22561800 22569783 TAGTACAGTCAGCTGGTCCT 60 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000017927 3 1 3 80 4 100281145 100284518 ACCACTACTGGTCTGTGGA 60 100284562 100284580 GCAGGACTGTGTAGTTCCA 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019853 1 1 4 85 7 117721920 117721938 GAATGAATGGAGCACTGCC 59 117712147 117721875 CATTAGTACACTGTACAGAGCTC 59 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000085211 3 1 3 112 13 103253030 103253048 ATGGACATGCTGGACAGAC 60 103245361 103246022 GTTTGGCTGTGAACAAGGT 59 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394 3 1 2 87 20 30791693 30794133 AAGGTACAGAAGAGGAGGAC 58 30794185 30794203 GAGGGAGTGAGATCTGTGG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000091735,ENSRNOT00000079738,ENSRNOT00000080419 3 5 12 116 20 3352391 3352409 GTGAGGCTCACAATGAGGT 60 3352483 3352675 CTCGCTCTTTCTGTAACATATACTG 60 NA Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 1 2 2 80 19 56031059 56031166 GAATATCTGGCCTGGTTTCTC 59 56031208 56031226 TGCTTGAGGTTGTTGTAGG 58 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773 3 1 2 115 3 2452788 2453039 GAGAAATGCAGCCCTACCT 60 2452691 2452712 GTTGGTCAGTATTCTTCAGCTG 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000038264 2 1 2 109 13 103323458 103325830 TCAATGAAGGACTGGGCTC 59 103331906 103331925 CAATGCAACGTACCTTGGAG 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 2 2 2 80 2 189400872 189400890 GCGTCAAGTAGTAACTGGC 59 189400931 189401325 AAACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309 2 1 2 80 X 1712941 1712963 GAAAGAGGGTGTTCTTGACTC 59 1712881 1712901 CCATCTTCATGTCTTCATGCA 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443 2 1 2 80 1 227496071 227498696 TGGATCCTTCTGTGCACTG 60 227496009 227496027 GTGACGAAGAAGAGACCGA 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 2 2 2 80 4 55813977 55816073 ATGAGAGCCAATAACCCAGAG 60 55816114 55816133 ACTCCACATCCCTTTCTTCG 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000019748 1 1 3 106 2 144917464 144933779 GTAATAGCAACCACCGCTC 59 144933849 144933867 TTGAGTTCTGGTGGAGCTG 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000019748 2 1 3 107 2 144917464 144933779 GTAATAGCAACCACCGCTC 59 144933850 144933868 GTTGAGTTCTGGTGGAGCT 60 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 1 2 2 81 8 107633349 107633367 TAGAAACCAGTGCCAAGGA 59 107632055 107633307 GGAACCTGTTGCCTAATTACTC 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828,ENSRNOT00000087156 3 2 3 80 10 52401 52422 CCAGTTCTCTTTGAAGAGTTGG 59 52462 52567 TACAAGTTCGCTGAAGTCCT 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 2 2 3 80 X 72513542 72514992 CCTGTGCCATCAGAATCCA 60 72513480 72513500 TACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000050037 3 1 4 99 7 51431435 51432796 CTTACCATAGAAGTACCTCAAATCG 59 51431360 51431378 GTTGGAGCAACAGGAATGG 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037 2 2 4 80 7 51416130 51417411 TGTTTCCAGGTATGACAGC 58 51416068 51416087 TAACTGTATGAGGCAGAACG 58 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049 3 1 3 80 20 3319828 3319846 TCTGGATGATGTCTGCACC 60 3319888 3320040 TTGAAGGTCATGTAATTGCCC 59 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 2 2 2 80 X 124895860 124895880 TTTCCAGGTATTGAACCATGG 58 124895922 124896423 TATGTGTTCATGGCATCGG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000077517,ENSRNOT00000014073 3 3 8 98 6 128075900 128077744 CTTTAAAGGCAAATGGAAGGTG 59 128077802 128077821 TTCATCATGGGCACTTTCAC 59 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 3 2 2 80 1 197259445 197259463 TACTACATTGGCCTCACGG 59 197259506 197261530 GGCAGCAATATTGTTCTGGG 60 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000024624 2 1 2 80 16 7088502 7089602 TAACAGTGAAGGGAAGTTCTG 58 7089641 7089662 ATGGTTACTGAAACAGGAAGAC 58 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 1 2 2 80 1 100229673 100229691 GATACCATGAGCTGTTGCG 59 100229535 100229629 GGGTCAAGAAGTCTGTCCA 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 2 2 2 88 17 82080658 82080676 TCTTATGTGGGACATCGGT 58 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073 1 1 2 101 10 47789558 47792052 GTTCACAAGCTGGTTCATGG 60 47792343 47792361 AATCCCTGAGAGCGAACAC 60 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138 2 1 2 80 10 71557131 71557151 AGATTGCATCGTCTATTGTGG 59 71557191 71558310 CCCAACCCATTCTTAACTCAC 59 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852 3 1 2 80 X 70373734 70377459 TATGTGATGTCCATGGTTGG 58 70377502 70377520 AAAGTACTTTGCCACGGTC 58 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000031236 3 1 2 133 1 91696454 91696472 TTGGTGTCCTCAGAAAGCA 59 91696563 91697348 CTCCAGCATCAAATACTTAAGACTG 60 NA Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 2 2 2 80 10 37175559 37178248 CTTCAGAGTACATGTTACGACC 59 37175500 37175520 CAGTTTCTATTGCGTTGTGAG 58 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531 3 1 2 80 4 86375717 86413279 TCAAAGAAAGCAGATGGTACC 58 86375657 86375675 CAAGGTAAGGCGACTTGTG 59 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549 1 1 2 80 11 73154326 73158036 CAGCAGAAGGATTTCTCCAG 58 73158078 73158097 ATACCCTTCCATGACAATGC 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000020886 2 1 2 81 1 218704417 218704435 GAAACACTCAGCCTCACTG 59 218700124 218700413 TTTCTTCCTCACGGTAGGAC 59 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000072663 1 1 2 80 3 148422347 148422367 TTTATCCACTCTTGTCGTCTC 58 148421247 148421874 ACCTGCAAAGAAAGATCCC 58 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986 2 1 2 80 15 108316052 108317748 AGAACGACTTCCAGATTTGG 58 108317790 108317809 GAAGACCACTACAGAAAGCG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 3 1 1 61 13 49935403 49935423 TTCTGGAGAAAGATACACCCA 59 49937867 49937888 CAGTAACTTCTTCAAGGAAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000064007 3 1 2 80 4 56409733 56409752 TAAACAGCTAAGGAAGCTGC 58 56406870 56409691 TCTCGCATCACTCTACACTC 59 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 2 2 2 81 5 50125103 50125543 CTGGTTTGTTATCTTCCTTGC 58 50125042 50125061 GCCTTTCATGATGTTGTCTG 58 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 2 1 1 99 8 76452398 76452416 CCTAAGCAGCCAAGAAGGT 60 76450803 76450822 GAACCTCCTCCATGAAACCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 3 2 2 102 4 162281731 162397227 GAATTCCTCACAGTGAAATGCT 59 162397290 162397308 CTGAGGACCACGATCACTG 60 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032 1 1 2 84 18 312841 318917 CAGATACCAGGGCTCTGAG 59 312775 312793 ATGGCCTTAATGGACTCCC 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 3 2 3 89 8 117769893 117769912 GAAATCCAGGACCACTACCC 60 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000083028 3 1 2 88 5 149056344 149060397 CTTACCTGGTCATGAGCGT 60 149060449 149060467 TGGCATCTTGGAGAACCTG 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000087107 2 1 2 159 9 15122957 15123293 CTCCTCAGTACAGTCACCA 58 15123416 15123434 TAGGACATGTCCTCTCCTG 58 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 1 2 2 180 3 120076233 120086989 GGAAGCAATGAAGGCATCG 60 120032294 120076089 ACTGTCACTGCTGTCTGAG 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000079942 3 1 4 85 1 250723431 250723450 ATTGGACTTTCAAGCCTCTG 58 250712561 250723386 ATAATAGACCTGGTTTGCAGTG 59 NA InUTR Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 2 4 4 81 1 250692825 250693532 CAATCAGCAAGTGCTGAAGG 60 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 1 1 3 83 X 70567174 70567192 TGACTGACACCTTCTACCG 59 70567382 70567401 AGATAACCAGAGTGACTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 1 2 2 80 1 64117137 64117298 CTGGAGAGGGTTACCTAGAG 58 64117341 64117359 ACAGATAGGTGATGGCCAG 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412 2 1 2 91 7 34649184 34649203 TATGAGGACGTGAGAACAGG 59 34649258 34649278 AAGATGTGCAATGCTCTCC 58 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000089783 1 1 2 82 19 38091350 38100646 GGATATCACTTTAGATGATGACCAG 59 38100684 38100704 TGTGATTAGGCCATTTCTCTG 58 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 1 1 1 61 4 149801039 149801057 GGTGTCCATTGAAGATCCC 58 149800993 149801011 CAGTAGCTGTGAGCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695 1 1 2 80 3 140023733 140023751 ACTGAAACGGGAGATGGTG 60 140023795 140045047 TGTCTCACCATGCTGTAGG 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 3 2 3 120 9 111244242 111244260 TTTGATTTGTTACGCGCCA 59 111244343 111244705 GCATCACGATATTGCCAAGG 60 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 1 2 3 101 10 88413603 88418144 TCCCTGCAAGGAAAGAGTG 60 88413520 88413539 GTAGTCAAAGTCCAGCATGC 59 NA Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 1 2 2 80 20 30707557 30708849 ACTCCAGAAATTGTGGCTC 58 30707495 30707514 GCGTACAATCTTCATTCCGA 59 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000022596 1 1 2 88 3 120729678 120729864 CAGAATCGCAAGACAGGAG 58 120729916 120729934 ATAATGGTTGAAGGCCTGG 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000083181,ENSRNOT00000079694 1 2 3 80 2 240642204 240642901 AGAACTTAGTGATTTGGCCC 58 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 2 2 5 114 20 4043789 4043807 TAGAGATGGCTCTGCAGAC 59 4043884 4045247 TGGAATACGAAATCCCTTGG 58 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558 3 1 2 83 6 93629246 93644564 TGGCCTCAGGTAATATTTGTG 58 93644606 93644627 TAGAATCACGTTGTAACTCCAG 58 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 2 2 2 80 3 113320574 113320763 ACCTATGAGGTATTTGCCGA 59 113320804 113320824 GTGCTTCATTGTTCTAGGGTC 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000083539 2 1 3 97 11 82760628 82760646 CTGTCCGTCCAATCATCCA 60 82759504 82760567 TGAGGCCAATCGCTTAGTC 60 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 2 2 3 84 1 87097352 87097371 TCACCAACCTAAACAATGCA 58 87096599 87097305 GTGTTCACGATGTCCTCAG 58 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 2 2 2 86 4 52162194 52162212 ATAGGAGAAAGTGCTGCGT 59 52162261 52164311 CTTTGTACAGTTCTCCGCAG 59 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 3 2 2 81 4 57038553 57039557 GGGACTATGTGCTATGCCA 59 57039598 57039620 CGATTCTTGATCTCACAATCAGG 60 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 2 1 4 60 2 118547219 118547239 TTCATCTTACAGACACGACGA 59 118584885 118584906 CAAAGTTGTTTCCACACTTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 2 3 7 118 15 34646202 34647381 TCAACACTGAAGGAGGAGAG 59 34646103 34646122 GAAACCACCACAGTAATGGC 60 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000082105 3 1 2 100 6 64265286 64265304 ATGATAGTCACACGTGGGA 58 64268248 64281434 CAAACCTCCATCCTTAGGAC 58 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 2 3 4 85 X 115561441 115563049 TACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 2 3 4 85 X 115561441 115563049 TACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 3 2 4 80 X 115565308 115582386 CTTCTATTGTACTTGCAGGGTC 59 115582427 115582445 AGAATCTTGGCACTTCCCA 59 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000078372 1 1 3 80 8 13875649 13875669 ACCACATCTAGATCTTGACCT 58 13875192 13875610 GATGAAGATTCTGAGTTCTGGT 58 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000078372 3 1 3 81 8 13875649 13875669 ACCACATCTAGATCTTGACCT 58 13875191 13875609 AGATGAAGATTCTGAGTTCTGG 58 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071503 1 1 2 98 1 100710495 100716859 AAACTTGTCAGGATGGGCA 60 100716921 100716939 ATCCCACAGTCACCATGTC 59 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054 3 1 2 81 1 100713389 100716856 AGTCCTGTTTCGAGGATGG 59 100716901 100716919 CCCACCAACACCATATTCC 58 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976 1 1 3 104 14 34485936 34486565 CAACTCAGCAGAGTCAACAG 59 34486631 34486650 CCATCGTATTGTACAGTGGG 58 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 3 2 3 82 10 35877247 35877268 TTCTTGAATTCTACAGCAGGAG 58 35877311 35878041 CTGGACTGGTTTGACAAGC 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 3 2 2 80 7 130167104 130167122 GGACCTACCTAAGCAGGTC 59 130166744 130167060 TAGGAGGTGTAGAGGCCTG 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000070819 2 1 3 86 9 95105337 95105355 TAGTGACCCATAGGTTCCC 58 95103977 95105287 GGACTCCACCAACTTTCAG 58 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417 2 1 2 110 18 11829196 11829214 CATACCATGGATCCTGGCA 59 11828466 11829122 AAACTGCACCTTCTCACCA 60 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758 2 1 3 80 13 52430664 52435262 CCTTTCAGTACAGATTACAGACAG 59 52430607 52430627 GGCTGGTATATCCATCAAGGA 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253 2 1 3 166 15 35001890 35002420 CTGAGGAGATTGTTGGTGGT 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138 3 1 2 88 10 13970698 13971981 TGGTCCGCAGAATACAGAC 60 13970628 13970646 CTTCAGGTTGTCATCAGCC 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 2 2 2 80 6 42274519 42275871 CACTCAAGACTCAAGCTGTG 59 42275914 42275932 CATCTGTGTCACTACCACG 58 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 3 2 2 80 6 42276301 42276321 ATGGACAGTTCCAGTATAGGC 59 42276359 42278089 CCATCCTTCTAATCGTGATTCTG 59 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 3 2 3 80 2 250763783 250765226 TGTCGGATATGACAGGAGG 58 250763721 250763739 AGGAAATCCCACTGAAAGC 58 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000031509 1 1 2 84 5 58309500 58309520 GCACTGATAATTTGGCAAGTC 58 58308995 58309454 TTCTTCGGAAACACTTGGC 59 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 1 3 3 80 X 77287181 77290479 CTACTACTCCTACTGTAGCACC 59 77287122 77287140 TTTGGCTTGTCACTGACAC 59 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 3 1 1 64 1 276011870 276011889 TTTCCGAGATAAATCCCGGG 60 276011595 276011614 TAAAGAGCCCTCCATCTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000088049 3 1 3 121 5 127651569 127651587 ACTTGCTGGCTTTGATGAC 59 127648926 127651080 CTTGAAAGAAGGCGTGGTG 60 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404 1 1 2 93 1 205013817 205028845 ACCAGAACCAAGTATCCGC 60 205013742 205013760 TTCCACAGTGCAGTCTCTG 60 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594 3 1 3 80 4 161954343 161954362 GGAAGGAAAGTCTAGCTGAC 58 161953940 161954304 GTAGGAATCTCAGTTCTTCTTGG 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000090071 1 1 7 80 1 83654927 83654951 CTTCTATCTGACGGACTCCA 58 83654995 83655014 GACAGGAACTCTTTGTCCTC 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000090071 3 1 7 80 1 83654923 83654942 CCACCTTCTATCTGACGGA 58 83654989 83655010 GGAACTCTTTGTCCTCATAGTC 58 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577 2 1 2 82 8 13572015 13572033 AGAGTGCTCGTGATTTGGA 59 13569774 13571969 TATCTCCCACAGACTCTGC 58 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000056221 1 1 2 95 7 119826156 119829233 CTACTGGAGGACATCCAGC 59 119829292 119830478 TACTGGATGCCCTTAGCAG 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000082595 1 1 2 141 6 135214116 135214134 TCCCTTGTTAGAGCCACTG 59 135214239 135216712 CTCTGCCGACACTTTACCA 60 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760 3 1 2 123 3 14990815 15037154 ACAATGAGAGGTCCCATCTG 59 15037240 15037258 GGCTTGATAAGCACCTCCT 60 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382 2 1 3 81 X 9891465 9949767 TACAGAAGATCTAAAGCGGGA 58 9949808 9949828 GCTATATGTCTCCAACAGCTC 58 NA Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000077146 2 1 2 80 7 12491066 12501647 CGACTTTCCTCAGGATCCT 59 12501691 12501709 TCTGACAGGGAATCCACAG 59 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 3 4 4 81 9 104717038 104718644 CGGTCTTAATTCATGGTGCT 58 104716976 104716999 CTCTTTGACAGAGTAAGTAGACTG 59 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 2 1 1 83 10 75201616 75201634 GTCTCCATCATGAACACCC 58 75191129 75191147 CAGCTGGACAATGGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 2 2 2 80 15 3239094 3293850 AATGAAAGTGGCTCAGTGGA 60 3239033 3239054 CCGAACTTATCTATCCCAATGC 59 NA Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 2 2 2 80 16 36001763 36001782 GTTTGGATTTAACATGGCGG 58 36001824 36032277 TACTTGCATTCTTCTTGGCG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 3 2 2 80 10 47985104 47985124 CGTGATATACACAGATGCCCT 60 47983787 47985065 ATCTGGTTGAAAGCTTTGACTG 60 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 3 4 4 81 17 4270324 4270621 TACAACACGAACGAAGAAGG 58 4270665 4270683 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 3 2 2 135 3 122942746 122943058 TCTCAATGCCAGGATGTGG 60 122942629 122942648 TTGTTCAGAACACAACGTGG 59 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 1 1 1 60 10 14628981 14629002 AAAGATGACTATCCGTCCTCAC 60 14625079 14625097 TTGGATGAAACAGTGGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406 1 1 2 195 1 209768797 209778401 CAAGTCACTCCTTGTGGTC 58 209785783 209786478 CTGAGAATTCTTGAAGAACAGG 57 NA Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632 3 1 2 86 16 48732624 48732644 GGTTCTGAACACTTAACCCAC 59 48634956 48732576 CATGGTACCCTGAAGGTGG 60 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000050284 1 1 3 95 13 52668964 52673645 AACAGGAAGAGCAAGAGGAG 60 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692 1 1 2 104 5 129287218 129287237 TCAAACTCCTAGACTCTGCA 58 129287728 129287902 TTCTTGTGCAATCCCACTG 58 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692 2 1 2 105 5 129287217 129287237 ATCAAACTCCTAGACTCTGCA 59 129287728 129287902 TTCTTGTGCAATCCCACTG 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145 3 2 3 80 17 6013636 6070591 CCGGACACATTTGTTCAGC 60 6013574 6013592 AACTTTCCCAAAGGCTCCT 59 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828 2 1 2 109 2 104882268 104885893 AGGTACATCTGTGATGGAGAG 59 104885961 104890347 CAATCTGGTCAATCCAATTGCT 60 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000002006 1 1 2 80 12 29057180 29070398 CATCCCAAAGCCTGATGAG 58 29070442 29070460 TTGAAGAGCTCCTTCACCT 58 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 2 2 2 80 6 104280893 104283648 ATCTCAGCTGTCTTGTTTACC 58 104280833 104280855 CGTAGATCTTCTCTTTGATCCAG 59 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697 2 1 2 131 5 128865485 128881879 GAAGATGGCGATGGATGGA 60 128885037 128885056 ATCTTCTGTGGTCTGGAGAC 59 NA Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 1 2 2 80 X 153644514 153644532 GCAGTGATGAAGATGACCT 57 153631501 153644470 TTTCAACAGCCTGGTAGAG 57 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000041961 3 1 2 80 18 17320706 17326200 ATGATCACTGACTCTGGCA 58 17326243 17326262 ATCCTCAGCATAGCTCAGAC 59 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334 2 1 2 83 12 36970819 36981000 CAAGAGTCAGCAGCAACAG 59 36981047 36981065 TTCTCCTCCTTCTCCTCCT 59 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 2 1 2 102 6 139293144 139293162 CAGCTTGGGTTTCCTTGTC 59 139293338 139293356 GAGTTTCAGGGACCTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 3 2 2 81 11 37928521 37929113 TACGAAGGTGATAACTCTGAGC 60 37928461 37928480 CATGAGTCACCATGAACAGC 59 NA Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 1 2 2 80 17 6730558 6730576 TTCTCCACTGCCAGTTCTC 59 6730616 6731535 GACTTCTAGATCTAACTCTGGGC 60 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 2 2 2 80 4 56721887 56721905 GAAGACATCCGGGACTCAC 60 56721948 56722064 GAAGGCTTTCACCTTGTCTG 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 2 2 2 153 4 6947747 6947875 AACTGTCTCCAGGTACACG 59 6947992 6948010 CCACCTTGTTGCTGAAGAG 59 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645 1 1 2 80 12 30223292 30223572 AATGTAGGCCAGGATAGTGTC 59 30223614 30223632 GCATAGTTCATGTGCACGG 60 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000090923 2 1 2 103 18 24744553 24744802 ATGTGATTGAGGGTGACGT 59 24744866 24745411 AAACTTGTTCTTCAGAGTGAGC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 2 2 6 80 1 41532722 41561429 TCTTGGACAGGAATCAAGGT 59 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 3 2 6 81 1 41532721 41561428 CTCTTGGACAGGAATCAAGG 58 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158 1 2 3 85 5 122037702 122100771 CCTGCAAGAAGAATCATATCAG 57 122100817 122100835 TCTGGATGGTCTCTAGCTG 58 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000086835 3 1 3 81 2 200760296 200760315 GGCAGACCATCCTAGATGTC 60 200757651 200757671 TAGATGAAGGCCACACTGG 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 3 2 2 80 10 107310289 107310308 AGAACATCCAATGTCCTGAC 58 107307916 107310246 ATAGCCAACATCCTTGGTG 58 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 2 2 3 151 10 70566472 70566491 TAAATCTTGACCTGGGTCCC 59 70579746 70580554 GAAGGACTGTCCTACTGCC 60 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 3 3 3 88 2 200798229 200798247 AGCAATGAAGCACAACGTC 60 200798297 200806602 TCAGAGCATCAATTGAAGCAG 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 2 3 3 80 3 118160729 118175175 GAAGAGTGAACATAATAGGTGAGC 59 118175214 118175232 TTAGCATGTCCTGCTCCAC 60 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828 1 1 2 80 2 3788644 3809223 ATCCAGTAAGTTTCAGACCCA 59 3809264 3809283 ATGCTGACTATTCCTCTCCA 58 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 2 2 2 81 7 144058465 144058483 AGTTCCTTGAGGATGGCTC 59 144058528 144058662 GTTTGTACTGGCCATCCTG 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000048752 3 1 2 103 18 27414126 27419087 TAGAACAAGGGTATCAGTTAGC 57 27413092 27413111 GCTCAGAATACTGAGAAGCA 58 NA Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 2 2 2 80 7 12773491 12773603 CCATCAAGTTTGAGCTGGAC 59 12773430 12773448 AGTCCTGGCTGTCATTCAG 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521 3 1 2 137 10 88517715 88533101 AGAAGCAAAGAGGGAAGCA 59 88514464 88514483 CGATTACCGTAATAGCTGGC 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 3 2 2 80 7 126759574 126759594 TCTTAGACATCCCTTTCCACC 59 126759632 126761575 CATACTCGTTCAGAAAGTCACTG 60 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619 2 1 2 114 9 79523410 79530240 TGTGTCAGTGGTAACAATCCA 60 79523316 79523335 TGTCATCATCTGCCTCTGTG 60 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858 2 1 3 80 1 48051110 48051128 GCAGAACATCCATAGCCTG 58 48051171 48052077 AGAACTCTCACCTTCTTCCA 58 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000013073 1 1 3 80 4 61781340 61781360 TGACCCTTCACTATTACAGGA 58 61781402 61782101 CGAATAAGAACCTGGGCTG 58 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000040740 3 1 2 83 1 261428420 261429862 CAAAGATGCAATAGAGGAGACC 59 261430050 261430068 ATGGTCAGCTCATCCTCTG 59 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 3 2 2 93 17 9837119 9837137 AGTATTTCCTGGGCCAGAG 59 9836513 9837065 ACATGTTTGCTATAGGGATTCG 59 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423 1 1 2 80 7 130252449 130252468 TTCACTCCTCAAGTGAGGAC 59 130252511 130252897 GGTACTCAGAGAAGGCCTG 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 2 2 5 89 10 56195687 56195705 GTACATGTGCAACAGCTCC 59 56195757 56196087 AGAAGATTCCCACTGGAGTC 59 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000091675 1 1 2 85 11 87678481 87678499 TAGATCCTGTACAGGCCGA 60 87678548 87682446 TGTAGTCAGCCTAGGAAGC 59 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 2 1 2 102 6 139637322 139637340 CAGCTTGGGTTTCCTTGTC 59 139637128 139637146 GAGTTTCAGGGACCTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000005479 1 1 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11071814 11075498 CCTGTATTGATGGTTTCCTCC 59 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000075708 1 1 2 95 8 82274468 82274486 CACCAACTCAGACATGCAG 59 82276041 82276062 CTATGGGAAGTCTGCAACAG 58 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000075708 2 1 2 96 8 82274466 82274484 TTCACCAACTCAGACATGC 58 82276041 82276061 TATGGGAAGTCTGCAACAG 57 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787 1 1 2 80 9 17122853 17123097 GATTCTGTTAGCTGAGGTGC 59 17123140 17123158 ATCTCATCCTGGACGATGG 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000082985 3 1 3 118 6 51297217 51297708 GGACTACACTTATCTTATGTGCAG 59 51291134 51291152 GCAGGCTTCTTGCAATCTG 60 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000061858 1 1 2 80 4 9763859 9773123 AGGTCGTCCTAGTAAGCAC 59 9773167 9773185 GGTTGTAGAAGTGCCTGAG 58 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 1 3 3 80 5 134206571 134206591 GACTATGTGAAGGTGGTTCTG 59 134205115 134205583 GAGCAAACCATAACCAATCCA 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287 2 1 3 97 18 25209467 25210987 AAAGAAGAACAGTGACAGCG 59 25211046 25211065 GGTTCACTCTGATCTCAGGG 60 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 1 2 2 80 7 144316261 144316281 GGAGTTAGAGGATGACATCCA 59 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000083693 3 1 2 82 13 57380131 57403480 CCTCTAGAGGGCAAGAAGG 59 57403523 57403544 GTGGTAGACTTCATTTCCTGAG 59 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000083672 2 1 2 92 4 65113052 65113176 ATCATCAAAGTACCCGGCA 59 65113232 65113250 ATTTCGGTAGACGTAGGCC 59 NA Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 2 2 2 80 7 120602153 120602172 TGTGCTATGAGTACCTTGGG 59 120601961 120602112 CATACATACAGCTGGACTCGA 60 NA Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 3 2 2 80 7 120599622 120601915 GGTTCTGTAAACAGGCTACC 58 120599561 120599581 CAAAGGCCTGGAGTATAACAG 59 NA Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 3 1 1 60 11 33890008 33890027 GTCTGTACAGAGCTACTCCC 59 33893002 33893020 GGCTTGAGACATTCACCAC 59 NA DesignNoJunction Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000083764 3 1 2 84 9 17208178 17208197 TCCTTCAATGTGGAACTGTG 58 17204705 17208132 GTTTCCATCTTCAGCCTCTG 59 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 1 2 3 80 12 36695273 36734422 CAGGTGCTCAAGAATGTCC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 1 2 2 80 13 55502923 55515774 GCTGCACATTCTTTAGTGGG 60 55502862 55502883 GTCAGACTTGAAGTTGTATCCG 59 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 1 2 2 80 11 86672525 86674249 CAGGAGCATATAGAGGTTTACCA 60 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 1 2 2 89 9 16959236 16962133 AGCAGAAGGTTATTGAGGAG 57 16959166 16959184 GCTCCAACTCAGTTCTGAG 58 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 3 2 2 80 4 155667181 155667202 CCTATTGGACAATTGACACCTG 59 155667243 155667411 GGGAGTCTTGGGATAGGTC 59 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000087883 2 1 2 88 4 155655041 155655059 GGCTGGATATCTGCCTCTC 59 155655111 155661804 TTCCAGGTTCCTGACAGTC 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 2 2 3 80 6 136119893 136127002 TAAACTCACCAGAAGACTTCCA 59 136128838 136128857 TGTTCCGAAGATACATTGCG 59 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000017349 1 1 2 84 17 9611504 9613040 CAGTGGCGATTTCCTTGTC 59 9613087 9613106 GATGATGAAGAGGACGAGGA 59 NA Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000027609 1 1 2 199 10 15486140 15489010 AACATCAAGGAGAGCGAGG 60 15489172 15489274 CGGAAATGCACTGTGATCTC 59 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 1 2 2 80 10 90379806 90379824 CCTGATGGCTACTCTTGTC 57 90379866 90380008 ATCATCACAAGATACACCCTC 57 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216 3 1 4 80 5 58554268 58557716 ATTTCATGTTTGAGATCAGCCG 60 58557756 58557775 CCATTGTGTCCCATATCAGC 59 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000016946 2 1 2 84 2 127688688 127688708 CAAAGCTGGAATGGTACAGAG 59 127688750 127688848 ATTATAGAGCTCCAAGACAGAGG 59 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 2 2 2 80 17 17828342 17836684 TTAAAGTTTGAACGAGAGGTCC 59 17828283 17828301 GATATGGCACACTGTCTGG 58 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000078799 1 1 2 80 4 11146272 11152032 ATTCCTCTGGCAACAGTCC 60 11146210 11146230 GGATTCTGAAGCCAAATCCAG 59 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000042790 1 1 6 80 9 17350288 17350307 AAATCAGTTCGAGGAAAGGG 58 17350350 17353782 CTTGTCACATACGCTCCAG 58 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002477 3 1 3 80 11 88874545 88875536 TCGCGAGACAAGTTAATTCAG 59 88877141 88877159 ACCACCATCTCCAATTCCA 59 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482 2 1 3 94 11 88874548 88877133 CGAGACAAGGTTGCATCTG 59 88877191 88877209 ATTCCTCTCCAGTTGCCTG 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 2 2 4 80 7 120534778 120536149 CAGCAAGCTGATTACCAGG 59 120534716 120534736 CCTTGTATGAATGGGAAGTGG 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 2 2 3 80 12 41202606 41205272 ATGTCCTAGGTCATGTTAGCC 59 41205313 41205332 CCAGGGAGATACATTCGGAG 60 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 1 2 2 80 5 135021957 135024401 CAATCTACTCATCTTTCTCTGTGG 59 135021900 135021918 TTCAGGAAAGATGTCCCGT 59 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 3 2 2 80 14 783789 783808 GAAACAAACAGCAGACTGCT 59 783850 785632 TGCTCCATATCTGCTGTCTC 59 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000006408 3 1 2 81 3 122148158 122150132 AGGGAAATAACCCAGATCCA 58 122150176 122150194 GCTTCTTCTCTTTGGGCAG 59 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289 1 1 2 82 5 153262558 153263950 CCAAAGACGGAGCATTCAG 59 153263996 153264014 ATGTTTCTCTGTGCAGCAG 59 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 1 2 2 80 13 56901971 56904805 CTCGATGTGTTGAATCAACAG 58 56901911 56901930 CTGGTAATGACAAGGAGGTG 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 1 3 3 80 11 20495218 20495239 GAGAAGAGATGACCTTAACCTG 58 20495279 20501682 CAATGAGTTTGCCATTCCTG 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000084946,ENSRNOT00000089723 1 2 4 95 1 128226674 128226692 TCTACGGGTTGTCATTCCC 59 128217305 128220785 ATCCTTTGGGCATTCAGCT 60 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923 3 1 2 126 3 122701438 122701456 TCGACTACAGGATGAGGTG 58 122701041 122701348 CCCTCACACTTGATCTTCC 58 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335 3 1 3 80 17 21639928 21738501 ATAGGATTCCTGGAGTCCCT 59 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000068444 2 1 2 80 3 79861378 79861397 AACAATGATGACACCATGCT 58 79861439 79866730 CTTCATGGACTCCTTGACCT 59 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 3 2 3 90 4 58839570 58892956 CTCCCAGGATAATGGAAATAAGAC 59 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 2 2 2 80 10 56665028 56665048 GCATGTAAAGCAGTTAGTGTC 58 56665090 56665217 ATCCTTTCAGAGCCATTGC 58 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 3 2 2 80 X 156434862 156435189 TAGTTCAGATCCTAGCCCG 58 156435229 156435251 GTAGAAAGAGGACAGTATTCTGG 58 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078219 3 1 5 86 4 164687332 164688186 GATGAATTCTCCAAATGTCCC 57 164687266 164687285 AATATTGCAACAGCAACCAG 57 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 3 1 2 81 4 39531421 39531439 AAACAGTGATTGGGAAGGC 58 39531481 39531744 GGTACCGTATAATCAATCTGCT 58 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 1 2 2 80 7 54910514 54910535 TTATGGAGAATTCAAACGTGCC 60 54910575 54912744 AATTTCATGAAGGCCTTGCG 60 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000077715 1 1 2 80 6 98437668 98438565 CTAGGGAGTATTATCAATGGCT 57 98437609 98437629 CAAAGGGATCAACACTTTCAC 58 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 1 2 2 80 13 68754397 68756583 GAAAGCAGAAGTACCACCT 57 68754335 68754354 ATGCGTTCAAGTAGAATGGA 57 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000084769 1 1 2 81 9 82375132 82375151 GACACTGTCCCTTCAACGA 60 82375068 82375086 AGCAGCCTGTATCTCACTG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 2 4 4 80 14 79425690 79425710 GTCCATATCATGACATGTTGC 58 79425752 79426424 ACATGCCCTGAACATAACC 58 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 2 2 2 92 10 36590562 36590580 ACCAAAGGTGATCTCCCTG 59 36590636 36598159 CTGCACTTCAATCCGAGAG 58 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 2 1 4 84 4 167353567 167353587 CAGATTCAGATCTCCCTTCTG 58 167353633 167371301 GAAGGCTCTTCATTTGCTG 57 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 1 2 6 80 1 41928758 41928777 TCCAGAGACCTTAAACAGCA 59 41928252 41928718 TCTTGCATATTGCTTGACTTCC 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395 2 2 3 132 5 136044832 136046012 CATTTCCCATTCACAGCCA 58 136044718 136044736 GAATTCCCAGGGTTTGCAG 59 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823 3 1 2 81 1 225937569 225937587 GCAGCAGTGTCATGAAGTC 59 225932029 225937046 CGCTCCTTCTCAACAAAGC 60 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754 1 1 2 80 9 17742303 17742322 CAGAAGAACTGGAGACATGC 59 17742365 17746329 AAACTCCTTTGGGACCGAG 60 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000045532 1 1 4 82 2 18531192 18544070 CAAGACAGGTCGAATGAGTG 59 18531129 18531147 CTTCACTGCAAGGTTCCTC 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518 2 1 2 80 6 26543919 26543940 CTTGTTCGAGAAAGGAGATGG 59 26543723 26543741 ACCAGATCAACGTAAGGCA 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000084553 1 1 3 80 12 37424678 37425171 AAATCAAGGAAGGAGTGTTGC 59 37424618 37424636 GGCTCACAGTCAGATTCCA 59 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542 3 1 2 80 2 136994060 136994266 CTCTCCCTTCTACCTTCACC 59 136994309 136994327 ATACACCTGGTACACTGGG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000050073 2 1 5 180 11 27876311 27918029 CTCATCAAAGAGGCAAGGG 58 27868031 27873992 AAATCCCAATCTTCTTCCACAC 59 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000074720 2 1 2 80 1 83049377 83049398 CCATAGTGATCCATTCTTGGA 57 83049785 83049805 CCTTCCTCAAAGTATTTGTGC 58 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000010482 3 3 4 85 14 80095237 80100347 AGAGCAAGGAAACCAGGAC 60 80095170 80095188 ATAGATCACACGGCTTGGG 60 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151 2 1 2 81 8 91384940 91387818 CCAAAGGCTGATAAAGAGAAGTG 60 91387856 91387877 GAACTGATAATGGTGGTGACTG 59 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 2 2 2 80 5 59517452 59517783 AATTCTGGGAGTAGGCATCTC 59 59517392 59517411 TGTATCAGCTTGGTCGAGTG 60 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227 2 1 2 80 8 58378666 58378687 CGATGTGGAAGCCAATTATCTG 60 58378727 58382705 CCAAAGCAATCCAAGAGCTG 60 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000074723 3 1 2 131 2 113605829 113605849 ATGAAGAGTATCACCTGACCC 59 113599727 113605736 CACATGGCCCATTTACGTG 60 NA Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 1 2 2 80 13 80738306 80738326 CTGGAAGAAGGACTAGAACCC 60 80727379 80738267 TTCAACATGTTCCGTGAATCTC 59 NA Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000027064 2 1 2 99 9 82637049 82637068 CATCAACTGTGGCATCTACC 59 82637130 82638098 TGGAGATTCCTCCAGTTGC 59 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000080188 1 1 2 81 10 109604595 109604895 CAGAAGGTACAATAATCCGTGTC 59 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 1 2 2 80 9 94229013 94229114 TAGCGTCATTCCAGTGGAG 59 94229157 94229176 AGCTTCTTGGCAACATTCAG 59 NA Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 3 2 2 80 8 58097200 58097222 CTCTTATTCTACCAGTTAGAGGG 57 58095389 58097163 GAGATGAGGGAAATTACTCTGG 58 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508 3 1 2 80 16 7387900 7388119 CTTCCTTAAGACCTATCAGACTC 58 7387842 7387860 TCCTTCTCTTTCAGGTGGG 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 3 2 2 102 1 87928654 87929975 GAGACCTGACTGACAACCA 59 87928570 87928588 TTAATGCTCTCCTCCTGGC 59 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528 2 1 2 98 1 65660758 65661307 AGTGAATCAGGCCATCTGG 60 65660678 65660698 TTAATGAGCTCATCTGCAAGG 59 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000032792 1 1 2 80 8 94500711 94500729 TCCCAGCAGTCTTATGGAG 59 94494288 94500669 CCAGATCCTTCTTTGTTTCCA 58 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 3 2 2 110 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001361 88002687 GAAGTGGTCAATGTTCACCTC 59 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034 1 1 2 89 9 27642189 27642207 TGGAAGCCACATCTGAAGG 60 27630486 27639494 CTTAAAGCTCAGCTTCTGACTG 59 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 1 2 2 96 20 5115205 5115778 AGAACCAGAACCGATCACC 59 5115838 5115856 AGGTGAGCAGTAGATGTGC 60 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000032941 1 1 2 84 10 92227699 92227717 CTTTCATCCTACGCAACGC 60 92227763 92228313 GAAAGGTACACCACATTGCTC 60 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000002812 3 1 3 111 11 31115568 31117713 AAAGAATTTGGAGCACCCA 58 31115323 31115341 CACCATATCCAGAAGGTCC 57 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 1 3 3 80 1 135813268 135818693 TCATCATCCTCATCAGGACAG 59 135813208 135813226 CCAACAAACGAAGGAGCAG 60 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000082564 2 1 3 97 1 135800005 135800024 CCTTCATCCTCTACACCACC 60 135791506 135799945 ATACTCTGTGCTGGTGCTC 60 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000016801 3 1 2 87 7 143847218 143851682 TCTACAATCCGTGGAGACTC 59 143847150 143847169 CTTATAGACCCGAGGAGGTG 59 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734 1 1 3 102 3 129599378 129599399 GGATGGACCAAATCAATAAGGA 58 129599459 129779770 GATTTAAGCTTGTTACAGGGAC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 2 4 4 81 10 65307778 65307796 CACCAAGATTGCTGACTCC 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 2 2 2 80 3 9926777 9926795 CATGACGTCACAGATCACG 59 9914162 9926736 CCATCATGGAAATTCGATTTCC 58 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 2 2 2 84 7 15072676 15072694 GGAAACAAACAGGAACACC 57 15071206 15071226 AGAGTTTCTCCAACAACTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 3 2 2 80 10 90300748 90300767 TGTTTGCTTCTGTTCTACCC 58 90300174 90300705 TACTGACAATCAGCGTGGT 59 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445 3 1 2 95 10 90308327 90308345 ACAGTGAAGAGGAACTGGA 58 90307294 90308268 TGGGAAGAGCTTCTGACTC 59 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000047843 3 1 2 80 11 32001624 32001645 CTTTGAGTCCAGAAGTCATGAC 59 32002479 32008802 CTTTCATCCACCCATTCCC 58 NA Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760 3 1 2 81 2 100246432 100249437 ATCCCAATGACAGTTCTGC 58 100246369 100246387 CCACAGATGGCACATAGAC 58 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000019555 1 1 2 83 14 81667701 81667719 ATGAAATCGTGGACCTCAC 58 81662111 81667657 CTTCAACAATCACAACAGAGTC 58 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799 1 1 2 88 14 81667698 81667716 AAATCGTGGACCTCACCTG 60 81661785 81667648 TTTCTCACCAATGCTTACCAC 59 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733 1 1 2 80 20 44595977 44595996 AAATCCCTCGAGAATCCCTG 59 44596039 44599152 CATTCCAGGTACCCATCCA 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000091084 2 2 3 82 12 37900825 37900843 ACTCCATCAGCCTTTCTCC 59 37900888 37900989 TGTGATGAACTGACACTGCT 60 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 3 2 2 141 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820692 99820710 TGGAGAAAGGCCAGTAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000084470 1 1 2 94 9 40984987 40985005 CCCTCCAGGTTACATTCCA 59 40985366 40985389 AATGTGATCACTGCTGGGA 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684 1 1 2 80 1 251269793 251269816 GAAGCTTTCAGAGTATGAGATGAG 59 251266156 251269759 GCTATATCACTCCAAGTAACATGC 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 3 5 10 83 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122197 87126968 TCATCATAATCGTCTGGGTCC 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000080836,ENSRNOT00000082494 1 2 10 190 10 87136050 87137904 GGTGTCTCAGATTCATTCTTAAGG 59 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000041571 2 1 3 80 4 150719811 150719830 TTCTGCTCAGTAGCATCTCC 59 150718422 150719768 CTGCATTGCCTAGGATGTG 59 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891 2 1 3 104 6 3745081 3748791 AGAAATGGAAAGTGTTCCTGTC 59 3744998 3745016 TCTTGACGATGCCTACAGC 60 NA Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856 2 1 2 80 1 216812908 216812926 TTCATTCGCTACTCCCGTC 60 216810363 216812280 TAGCATAGTGGAGGTTGAGAC 59 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157 2 1 2 80 9 38344792 38345758 GAAATCATAGGAGTAACGAAGC 57 38345798 38345817 TTGAGCTTCTGTCCATATCC 57 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000063781 3 1 2 81 9 43021355 43021373 GATGACGCAGTATATCCGC 58 43018012 43021310 TTTCAGGAAACATGGCACC 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932 3 2 3 80 8 128235617 128235636 CATGCATTCACCTTCCTTCG 60 128228842 128235577 CACAAATTCAGTTGTGTATGCC 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000006117 1 1 2 80 13 85858095 85858113 CTAGAAGCTGAGCTTGCTG 58 85858157 85858277 GACAGGGTCATTTGTCGAG 58 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627 3 1 2 80 3 120675777 120723878 AGGCTTTGCTAATGAAGTTGC 60 120723916 120723938 GAATATTGAAGGCAGAGATCACC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 1 3 5 80 X 159169770 159169789 AGTATTACTGCGTGGATTGC 59 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 1 1 1 117 7 144648409 144648427 GCCCATAGTCTACCCTTGG 59 144648983 144649001 TAATTCCAGGACCTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000090143 1 1 4 146 1 201256995 201281636 TGAGTTCCGACTCTGAGGA 60 201281744 201293319 AAATGCATCCTGGTTCTTCTG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728 3 1 2 80 3 57918446 57918465 GCAAGATCTACAGCACTCTG 59 57917555 57917575 CATAGGTTATGGCACTGGC 58 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 3 1 2 83 19 19782086 19782107 AGTTACCACATACAGAGATTGG 58 19781921 19782043 GTAACACCATTTCCATTGCA 57 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 1 4 4 80 3 152584120 152584140 GCCCAAGATTCTCAAGATCTC 59 152584181 152586768 CTCTCGAACTGCTCATACTC 58 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000080557 1 2 4 81 12 48167383 48167401 CTACATGAAGGCTGTGGTG 58 48167055 48167338 CTTGTCATAGTGGGCTTGC 59 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000091747 3 1 2 108 3 22413273 22458903 TCATATCCTGAGGTGCAGAG 59 22381232 22390106 TAACTGAGAGGCTGTCCAC 59 NA Rattus norvegicus 81 LOC680885 ENSRNOG00000039749 ENSRNOT00000060975 3 1 1 90 16 8555094 8555112 TGTGACATCCAAGACCTGG 59 8554207 8554225 ATCAGAAGGCGTCTAGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Krt15 ENSRNOG00000014099 ENSRNOT00000019037 1 1 1 80 10 88048303 88048412 GGTTCTTCAGTAAGACTGAAGAG 59 88048245 88048263 TGATCTCAGTCTTGCTGGT 58 NA Rattus norvegicus 81 Krt15 ENSRNOG00000014099 ENSRNOT00000019037 2 1 1 80 10 88048302 88048411 GTTCTTCAGTAAGACTGAAGAGC 59 88048244 88048263 GTGATCTCAGTCTTGCTGGT 60 NA Rattus norvegicus 81 Zzef1 ENSRNOG00000024535 ENSRNOT00000036278 3 1 1 80 10 59434705 59434723 GCATCAGATTTGCCCAGAG 59 59434766 59436365 ATGTTCTTGACCTCCTTCCC 60 NA Rattus norvegicus 81 Rn60_10_0878.7 ENSRNOG00000051123 ENSRNOT00000075981 3 1 1 84 10 87922486 87922507 CTTTAAAGATTGCTCTTCTGGC 58 87922253 87922441 ACAATCGTTCCTTTCCAGC 59 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 3 3 3 86 1 89557102 89557126 CGTCTCCTCTTCTTTGATAATTACG 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Celsr2 ENSRNOG00000020058 ENSRNOT00000027263 1 1 1 80 2 211187863 211188024 CTGTTTCGATGAGTGTCTTCC 59 211187803 211187821 CTTTCTTCTCGAAGCCCTG 58 NA Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 2 2 2 80 8 59298350 59299801 TCACTTTGTTTCCAGTTCATCC 59 59298291 59298312 TCAAAGAAGGTGTGAATACAGG 58 NA Rattus norvegicus 81 Lbp ENSRNOG00000014532 ENSRNOT00000019787 3 1 1 80 3 154808487 154809220 GATGTCAACGATGAGCTGG 59 154809264 154809282 GATCTGGAAGTCGAGGTCG 60 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310,ENSRNOT00000081033 3 2 2 80 14 73898781 73898800 AGTTTGGGATATAGGAGGGC 59 73898843 73909961 ACCAACAGGATTCCCTGTG 60 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000012417 1 1 2 97 2 166423454 166423478 CAGAAGACATCTGAAATGGATACAG 60 166423531 166424757 AAATCAATTCCCAACACCAGG 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000057473 2 1 2 131 2 172349988 172458486 CTCTGCACAGAAGAATGAGAG 59 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343 1 1 2 91 8 96511096 96511114 GAATGTGGTTGTTCCCGTG 60 96501604 96511047 CTCTTCTTACTTTAGTTCCACTCTG 59 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 3 2 2 80 20 4540678 4540788 ATGATGGAGCGGGATACTG 59 4540616 4540635 TGTCTTCAAGACGGTACTGG 60 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000064140 2 1 2 110 8 118323044 118323062 ATTCACCCTACTGGGAGTG 58 118323136 118323832 CTGATGTAACCACATGCCG 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 3 2 2 80 3 161235256 161235378 ATGACTACAGAGGATGCTTGG 60 161235419 161235438 GCATCTTCTCAACCATCCAG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 3 2 3 160 14 81051932 81051953 TGTTAGAAAGACCAAAGAGGAC 58 81014698 81037651 CAGACACAGTTGCAGACTC 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287 1 1 2 80 2 247248625 247281849 AACCTCCGGTCTCATTGTG 60 247281892 247281911 TAATCTTCAGGCCCGAACAG 60 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000082356 2 1 2 153 8 128577500 128585820 CGGGTTTCCTATGTAATTCGA 58 128585935 128587751 ATGGATCTTGCTTGTGCTG 59 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513 3 1 5 81 13 34489088 34489106 TCCTCATCCTCAGGTTCCA 60 34489149 34490899 TGTGTCTGGACTCTAATGACG 60 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 1 2 2 80 10 59810584 59810602 GGACTATTTCCGAGTCACC 57 59810644 59812794 AGGAAATATTGAATCCCTCGG 58 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038 2 2 3 93 3 176487423 176487901 AGGAGAAGGTGAAAGAGGG 58 176488626 176488644 CATCCCTTACTGCCAACTC 58 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 1 3 3 80 8 87270532 87270550 CTAGCAAAGTGACCAGCAC 59 87268998 87270489 CTTGTCCTGACACTGATTGG 59 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000083702 1 1 3 91 1 40879927 40899159 TTACCATCACAGTTGGACAG 58 40899213 40899231 ATCTTCAACAGCTGTGGAG 58 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 2 3 3 86 5 154393586 154393604 GAGTGGAGACAGACTGACC 59 154392572 154393537 ACGGTGTATCTAGCTTTGGA 59 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 3 2 2 80 2 27952981 27953913 TGTGCACATTCATACCACG 59 27953956 27953975 CTTCTTGTAAGAGGCACCTG 58 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000083329 1 1 2 161 8 128792963 128794277 AGGCTCAGTTACATCCAGTG 60 128795218 128795236 AGAACACAGACAGCATCCC 60 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000087432 2 1 3 81 1 219833666 219836234 GGTACAAGGTACATAGAGGAGG 59 219836276 219836294 AACAGGTGAGATCATGCCA 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 2 2 7 80 16 64036978 64043376 GCTTCTACAAGCATCTTGGG 59 64048171 64048190 AGATGCCAGTAATTGTCAGC 58 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 1 2 2 100 1 101085490 101085508 TTCCAGTACGACCATGAGG 59 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381 1 1 2 80 7 3320348 3333283 AATGAGTTCTCAGGCCCAG 59 3333326 3333345 CAGTAGGAGAACGTAGAGCA 59 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911 3 1 2 85 9 118426 118958 GAGCTGTTCCTTCTATATGTTACC 59 119002 119020 ACTGACTCGACGAATACGG 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025939 2 1 3 80 2 210780544 210781428 ACAGCCCTGACTTTGAGAG 59 210780482 210780501 CCAGGAATTCGGAGTAAAGC 59 NA Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 2 1 2 60 14 85312063 85312083 GGGAATTAGAGGCAGTAGGAG 60 85312281 85312300 CAAGCTCCAGTCTTTAGGGT 60 NA DesignNoJunction Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 3 2 2 80 1 141082549 141084940 GTACCTGCACAGGATATACG 58 141084982 141085001 ATGGTTAGAAGGCTTTCGTG 58 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119 3 1 2 80 10 78134206 78153765 GTTACAAGGTGGGAATCTCC 58 78134145 78134163 ACAGCAAATGTTTCCTGGA 58 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000083009 2 1 2 81 10 78134207 78134387 CAAGTTGAGGTGGGAATCTC 58 78134145 78134163 ACAGCAAATGTTTCCTGGA 58 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 3 2 2 80 2 39001973 39001993 GAAATCATGGTGGTGAATTGC 59 38997837 39001931 GCCTGTTCGATGAATCTGG 59 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000080695 3 1 2 108 14 82278064 82278991 TACTCAAGTCCTGGATCAGTG 59 82277976 82277994 ATGAAATTGGTGGCTCGAC 59 NA Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 1 2 2 80 X 32076394 32076416 AATCTGTACCCTTTGACTACTCC 60 32072804 32076354 ATCCCAGCTCTGATTCACC 59 NA Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 2 2 2 80 X 32072807 32076357 AATGGTGAATCAGAGCTGG 58 32072745 32072763 ATTTGAGGAAGGCCAACAG 58 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 3 1 2 72 10 62053943 62053961 ATGCATTTCTGGAGGACAC 58 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261 1 1 3 80 10 82252466 82252484 CTCTCAAGAAGGAATCCCG 57 82251518 82252423 ATTCTCTGGATCCTTTGACG 57 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 1 1 1 119 8 36910008 36910026 TATCCTGACTTTGCCTGCC 60 36910550 36910568 GATGAAGCGCACGTATTCC 60 NA DesignNoJunction Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000087550 3 1 5 110 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420457 4420647 TTCTGGAAGGAGAAGTATCTGTC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 3 2 4 83 8 39185263 39185281 ACCAATGCCTGAAAGAGAC 58 39184086 39185219 CCATTGTTGATACAGTAACCTG 57 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184 1 1 2 92 3 161426096 161438677 GAAGACGTCAAAGGTGACG 59 161438732 161438751 GTTCCTGCCATCATACTCTC 58 NA Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 3 2 2 80 1 255924878 255927573 AGCAGCTTGGCTATATTGTC 58 255924817 255924838 TTTCTGACTGGATGATGAATCG 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 2 3 3 82 2 216346660 216346678 TTCCATACTCTGCTTGGGA 58 216345902 216346614 ATTTCTGACCTGATTGGCA 57 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 3 3 3 83 2 216347596 216347615 AAATTTGCTCAAGGTCTGGA 58 216346778 216347550 CCACATAAATCCGGACACC 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108 3 1 6 81 5 158083207 158083226 CAGTGACTCAGGAAGTACAG 57 158083269 158087865 CACATCTAGGAGTGTCATGG 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 1 6 8 102 20 4363557 4363723 GGAAACTGAACACAGGAAGG 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 1 3 3 80 16 54174529 54174548 TGGAAACTTTGTCCAAAGCA 59 54174589 54183974 GTGTAGTCTCCTTGCATAGTC 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 2 7 8 99 20 4389611 4389834 CTGGACTACATCAATGAGACAC 59 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 3 7 8 103 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389528 4389546 GAACCCTTGAACCTGTTCC 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 2 2 8 85 20 4387144 4387162 AAGAACTTCCTTCGTGTGG 58 4382464 4387096 CCAAAGAAGCTAGATTGCCA 58 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000073847 2 1 2 134 2 49128471 49128491 CAAGTCGCACAGGATTTGG 60 49128355 49128373 TTAGTGTGAGGCAGTCCTC 59 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838 1 1 2 81 8 118174106 118182323 AACATGGCAGCTTCTAGGG 60 118174043 118174062 CAAGAGCTCTTCCAATCACG 59 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 2 2 2 80 3 83005853 83008360 CAGAAGAGTTAGCAAAGCGT 59 83005792 83005813 TGTTGTTGGAAACTTCCTTCAG 59 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000012545 3 1 2 82 8 122137029 122137047 TGTCATCCTCTGTCAGTGC 59 122137092 122139298 TCCTAAGAGCAAGGCATCAG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 2 3 8 80 20 4482893 4482913 ACAAATTCTTCCTCTATGGCC 58 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279 2 1 2 88 3 176854409 176854928 TCAACTGCCAGAAGGAGAG 59 176854980 176854998 TGATTCAGGTGCTCTCCAG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000084375 1 1 4 80 3 56878118 56878141 CTCTACTGGTTTGGATATCATTGG 59 56878177 56883659 CTCATGTCTGATGGCATATTGG 59 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 3 2 2 100 16 75146133 75147254 CCTTACCATGAGCCTGGAC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000047761 2 1 2 87 16 75145529 75146004 GTGACTTTAGGGTCGTCCA 59 75146055 75146073 CTTGGGCAGGAAATTCGTC 59 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680 2 1 2 104 5 164690289 164691762 ATGATCAGGTTCAGCGTCC 60 164690203 164690222 TAACCATGGAGACCATGAGC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286 3 1 2 95 3 172175528 172175547 TAAGCATTTGAACAGACCCA 58 172175605 172176357 CACCTATGGAAGAGCTGTG 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547 3 1 2 80 3 66827913 66827937 TTCTGGCATCTTTCTTTCCC 58 66827852 66827872 TTGACTTCCGATCACAAAGTG 59 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252 1 1 2 81 16 62211204 62211222 CATCAGTTCCAACTGCACC 59 62207812 62211165 CTTCTTTACTTCCTTAACCTGTGAG 60 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 3 3 3 92 16 69882211 69882229 GCCGGAGACTGGTATTACC 60 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000089065 2 1 2 100 3 64362879 64363033 TGAGGAGATCCTTTGGCAG 59 64362797 64362815 AAACGGTTTGATGTCCAGC 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095 2 1 4 82 16 81912519 81912537 TTTGAGCCTCATCTCCGTG 60 81897669 81912474 GGTGCATGATTTCATCTGCA 59 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 3 2 2 81 3 60029831 60032569 AGAAAGTCCAAGGAGTTCGT 59 60032613 60032631 TTCCTCATGTCTGGATGCT 58 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000079394 2 1 2 81 3 79980381 79980399 TCTGTCATCGGTGTGAGTC 59 79980054 79980336 AACTGTTACTCACCACGGT 59 NA Rattus norvegicus 81 AY172581.21 ENSRNOG00000033545 ENSRNOT00000049396 3 1 1 61 MT 3807 3826 TAGGGTGTATTGGTAGCACG 59 3765 3788 GACAATAGGAATTGAACCTACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057518 ENSRNOT00000080644 2 1 1 60 5 122109299 122109317 GTGATCTCAGGACGAACGA 59 122109341 122109359 GAATCACAAGGGTTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 2 1 1 105 2 220647219 220647237 GGTCCAGGCATACTTTACC 58 220645319 220645915 TTTGTCAGTGGCACATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012582.1 ENSRNOG00000060042 ENSRNOT00000084190 2 1 1 65 2 198360391 198360410 CTTGTTGAGTTCTTCGTCGT 59 198360438 198360456 AAGAAGACCCGCATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044273.1 ENSRNOG00000000748 ENSRNOT00000000975 2 1 1 60 20 845001 845020 CTCAGGAGTTCAAGTTGCAG 59 845042 845061 TTTCCGAACTTTCATGTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044408.1 ENSRNOG00000051805 ENSRNOT00000084490 2 1 1 109 20 4833322 4833343 CTGTGTACTCCTGTGTACTCTC 60 4999954 4999972 TTAGCTGTGAGGAGCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010878.1 ENSRNOG00000051664 ENSRNOT00000086522 1 1 1 80 2 154501757 154501779 AGATTTCACCTCACATGCG 58 154501822 154501841 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AC094348.2 ENSRNOG00000057778 ENSRNOT00000091094 3 1 1 169 20 5125467 5125485 ATGAGAAAGTCCACAGCCC 60 5125314 5125335 GAAATACTTAAAGTGTGCGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053246 ENSRNOT00000089032 2 1 1 60 11 26461958 26461977 TGAGTACCCAATGTCATGGA 59 26461997 26462018 GTCATAGGTTAGAACACTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057167 ENSRNOT00000088951 3 1 1 60 5 4665163 4665181 AGGGAAGGATGAATTGCTG 58 4665121 4665139 TACTGATCAGCACGAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000060264 ENSRNOT00000091566 1 1 1 61 11 86761003 86761021 AAATGGCTCCTGCCTACAG 60 86760960 86760979 TGTATGGAGTCATTGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045755 ENSRNOT00000071647 1 1 1 61 11 89141688 89141706 ACTACCCTGAAGAAGCCTG 59 89141645 89141663 GTAACTAGGCTGACCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053466 ENSRNOT00000084545 3 1 1 60 16 84122192 84122210 GTGCCAGAGAAGAGCTAGG 60 84122234 84122252 CCTTCAGATGTTCACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052965 ENSRNOT00000082169 1 1 1 64 8 91224322 91224340 ATTTGCTGTGGACATGACC 59 91224276 91224296 GCTAGTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057446 ENSRNOT00000083954 3 1 1 60 8 110837276 110837295 CCGTGTAGAGATTAGCATGG 58 110837316 110837336 GTAAGGCTCCACAAATTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061771 ENSRNOT00000086971 3 1 1 62 5 34074884 34074904 CAGTATCGTAGCCAATGAGGT 60 34074842 34074863 CCACGGAAACATTTCTATTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054745 ENSRNOT00000079195 2 1 1 72 11 34658377 34658396 TTACTTGGCATGGGAGATGG 60 34658431 34658449 ATCCAGAGTGCAGTGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059595 ENSRNOT00000077354 3 1 1 60 16 36628273 36628293 AACGGTACAGAGAAGATTAGC 58 36628233 36628251 CGCTTCACAAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000056088 ENSRNOT00000080344 1 1 1 61 11 68058481 68058499 CACAAGTTGGGCAGAAGTG 59 68058524 68058542 AAAGGCAGTTTACTGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059823 ENSRNOT00000083243 2 1 1 60 2 110357355 110357375 GAGATTGATTCGTCTTTGGTC 57 110357395 110357415 GAAGGGTCTAGAAGGAGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ40 ENSRNOG00000057682 ENSRNOT00000079136 2 1 1 60 8 13870490 13870508 GATGTTGTGATGATGGGCA 58 13870531 13870550 AAGGCTACTTTCATTCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053522 ENSRNOT00000082517 3 1 1 80 15 39573383 39573401 CACCACTGGATAGTTGCCT 59 39571064 39573340 CTGATTTCCCTGGTACCCAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059078 ENSRNOT00000087164 2 1 1 60 2 84864737 84864757 TCATATGTACATCAGCAGGTG 58 84864697 84864716 TCAGAACACTGAGCATTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058409 ENSRNOT00000080354 2 1 1 66 8 37411055 37411073 GTGCTTACCTCAGCATCAC 59 37411007 37411025 GTCATCGTTGTGTAGGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.1 ENSRNOG00000051899 ENSRNOT00000085174 2 1 1 60 1 1726463 1726482 CCTAGTGCCATCCTGATGAG 60 1726422 1726441 ATCTGACACTTGTAGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam34l ENSRNOG00000056277 ENSRNOT00000078614 1 1 1 60 16 51732599 51732623 ACCTGGCTTTAGAGATAGTATAGAC 59 51732639 51732659 CCTCTGGTTAGTTAGTGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000055594 ENSRNOT00000088171 3 1 1 60 8 69096758 69096778 AGTCCTCACTGCTTATGTGAG 60 69096799 69096818 GTCGCCTTAGATAGCAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039694.1 ENSRNOG00000057430 ENSRNOT00000074962 1 1 1 60 X 82711144 82711162 AGAAGCCTACAGAACTCCA 58 82711186 82711204 AATTATGTGACGGGAGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036855.1 ENSRNOG00000056398 ENSRNOT00000082159 2 1 1 60 X 4286796 4286816 GACCAGATGAAACTTTGAGGA 58 4286835 4286856 AATACAGTAGGTATGCCATCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047325 ENSRNOT00000053460 1 1 1 60 1 264175855 264175874 CCCTGAATACACCTGATCTC 57 264175897 264175915 TACTTACCAGGTCCAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047325 ENSRNOT00000053460 3 1 1 60 1 264175857 264175876 CTGAATACACCTGATCTCGG 58 264175898 264175917 AGTACTTACCAGGTCCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059968.1 ENSRNOG00000054230 ENSRNOT00000078021 3 1 1 69 4 47117757 47117775 AACTGTGAGATCGCTTCTC 57 47117706 47117725 TGATGACATGTGACTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000056839 ENSRNOT00000083234 3 1 1 68 9 16957438 16957456 TTTGGTTCCCTGTCCTTGG 60 16957487 16957506 CCAGACCTTTCCAAATCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033745.2 ENSRNOG00000057895 ENSRNOT00000085972 3 1 1 108 11 38776460 38776479 GTTAGCACAGATGAAGCAGC 60 38776555 38776573 CTTTAACCTTTCCTGCGGC 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051947 ENSRNOT00000080639 1 1 1 60 6 144539544 144539562 TGTGACGTATCAAACCCGA 59 144539584 144539604 CCTCCTCAAGAGCTAGATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000054868 ENSRNOT00000089157 3 1 1 61 X 37279681 37279699 GAGCAGAGGAAATCCAGAC 58 37279638 37279657 GCAGAGTTGTAGAGATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054184 ENSRNOT00000087899 2 1 1 60 9 79560196 79560214 AGTTGGAATAGGAGCTTGC 58 79560238 79560256 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027575.1 ENSRNOG00000058289 ENSRNOT00000080424 1 1 1 60 17 37617631 37617650 AATGAAGACAGAAGGCTCTG 58 37617673 37617691 CCTAAGCCCAACACAAACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054805 ENSRNOT00000078611 2 1 1 60 X 132996384 132996405 TACAGAGAAGATTAACATGGCC 58 132996345 132996365 ATGGAACACTTCACGATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000056198 ENSRNOT00000077206 1 1 1 60 6 83271771 83271792 GCTAGAGAAGTTTCTCTGACTG 58 83271732 83271750 AACGCTACATCTCCTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054985 ENSRNOT00000080886 2 1 1 60 6 69084475 69084495 GAGCTGCTATGTCATGTATGG 59 69084512 69084535 AGTGAAGAAATAGATGGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052274 ENSRNOT00000080290 3 1 1 60 1 5438033 5438052 GCTACAAACAAGTCTCTGGG 59 5437992 5438010 CTCATGGTTGCCAGTACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000053927 ENSRNOT00000082298 1 1 1 60 2 165695626 165695646 TGATATTGGAGTGCATCTGAG 58 165695586 165695606 CGATGTTGTTATCAACAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052875 ENSRNOT00000082399 3 1 1 60 9 65051121 65051139 AGAGCTTATGCCTGCTCTC 59 65051079 65051097 GTTAGGCTAGTAACCGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055998 ENSRNOT00000081879 2 1 1 60 2 94180519 94180538 AAGTCTGGATATGCTGACCT 58 94180558 94180579 AAATTATGCAGTGGACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054240 ENSRNOT00000077904 2 1 1 60 X 33734100 33734121 CAAGGTCATTTCACTGATCTGG 59 33734061 33734081 ATAGAGTTTCGAGGGAAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.2 ENSRNOG00000059411 ENSRNOT00000084457 1 1 1 60 X 152889577 152889598 AATCTAGTGGAAACACTTCTGC 59 152889618 152889637 AGAAGCATTTCTGCACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053050 ENSRNOT00000082772 2 1 1 60 2 254424635 254424654 ACTAGAACTGGAACAATGCA 57 254424594 254424615 ATATGCAAGCTACCTTTGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052438 ENSRNOT00000089877 2 1 1 60 6 80946285 80946303 GTGTATCAGTAGGTGGCAG 57 80946243 80946263 TTCATAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000061905 ENSRNOT00000091515 1 1 1 88 6 49954997 49955015 TAGAACCATTGCAAGTGCG 59 49955067 49955085 TCTGAACACTGAGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000061905 ENSRNOT00000091515 3 1 1 90 6 49954995 49955014 CCTAGAACCATTGCAAGTGC 60 49955067 49955085 TCTGAACACTGAGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058895 ENSRNOT00000083704 3 1 1 60 17 12876620 12876638 TCTGTCACATGTGGGTCTC 59 12876660 12876680 AACCCTGAGTGTAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060983 ENSRNOT00000087087 1 1 1 60 2 164442533 164442551 AGAGACTTTGACAGCCCAG 59 164442573 164442593 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055073 ENSRNOT00000080392 1 1 1 60 17 42568507 42568527 CTTTGGCTGTGTAACATACTG 57 42568549 42568567 TCACCTTTGTGCATGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045032 ENSRNOT00000070299 2 1 1 60 9 26776887 26776905 ATGTGCCCAATCTTGTCTG 58 26776845 26776864 TACATGTTCTAACCAGGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056262 ENSRNOT00000087333 1 1 1 60 10 96048175 96048193 TTGAGGGTGGATTTGACTG 57 96048217 96048235 AGTAGTGAGGGAGGAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.3 ENSRNOG00000053408 ENSRNOT00000080615 1 1 1 63 17 44674571 44674592 GATGGACTAGAAATCCATTGGG 59 44674529 44674547 ATCAGTTCGTAGTCGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052396 ENSRNOT00000081731 2 1 1 60 16 61719658 61719676 CAAGCAGACGCCTAAAGAG 59 61719698 61719718 TCTATTGAAGTCCAGAAGAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052900 ENSRNOT00000082512 3 1 1 68 16 87696667 87696687 GTAGCTATTGTGACACATGTG 57 87696619 87696639 AAGACCGAACATAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059895 ENSRNOT00000082168 3 1 1 72 16 22497869 22497887 AAACCAGTCCCTTTCTGCA 60 22497815 22497834 TGAATGCACTCCCAAGTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058336 ENSRNOT00000081371 1 1 1 70 X 31969609 31969627 GTTCAATTGGGCAGAACAC 58 31969661 31969679 CATCCTTGTACAAAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049778.1 ENSRNOG00000061137 ENSRNOT00000072545 3 1 1 82 5 137527792 137527810 TATGACAGGTACATCGCCA 58 137527724 137527748 CATATTGTAACCATGGCACAC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000054722 ENSRNOT00000085308 3 1 1 67 6 75590253 75590271 TTATCCATTGCACTCCGGA 59 75590302 75590320 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000051716 ENSRNOT00000089356 1 1 1 60 16 14132953 14132975 CTTCAGTCAGTAGTTTACACAGC 60 14132990 14133013 CCATCTTAAAGGAAGACCTTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042015 ENSRNOT00000063768 1 1 1 60 16 50956722 50956740 ACCAGTCTTCACTGATCCT 58 50956763 50956782 TCCCATCCAAGTAATAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053797 ENSRNOT00000081039 3 1 1 61 1 227935212 227935231 TGTGTCAATAGGTGGCAGAG 60 227935170 227935190 TGTACAAAGCTCAGAACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000058152 ENSRNOT00000082390 1 1 1 86 1 48027214 48027232 AGCAGTTATACGCATGGGA 59 48027146 48027168 GTCTAGACCATTCTACAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055274 ENSRNOT00000085486 3 1 1 60 6 107753314 107753332 TTACTGTGTCACATGGGCA 59 107753272 107753290 CTGAGCACAGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000058691 ENSRNOT00000091579 2 1 1 61 X 107799818 107799836 GGCACAGTTACTCTACAGC 58 107799858 107799879 GTATCAAATGCTTTAAGCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056232 ENSRNOT00000077947 3 1 1 61 17 9764768 9764786 GAGAAGATTAGCATGGCCC 58 9764725 9764743 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054601 ENSRNOT00000091014 2 1 1 61 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874231 ATTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053829 ENSRNOT00000078373 2 1 1 60 16 81591650 81591671 TTAGAAGGACACAGAGATTAGC 57 81591691 81591710 CACTTCATGAATTTGCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066871.3 ENSRNOG00000061718 ENSRNOT00000085293 1 1 1 112 9 20528638 20528658 CATACGCACATACATTCACAC 58 20528546 20528566 GTGAATGTATGTGCGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053104 ENSRNOT00000085741 1 1 1 60 X 141265768 141265789 ATACAGAGAAGATTAGCACAGC 58 141265729 141265749 GGAATGCTTCATGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062512.1 ENSRNOG00000053339 ENSRNOT00000086465 3 1 1 80 4 180426509 180426527 AGCTGGAGTCCACTATGAG 58 180425875 180426466 TCCTTTGTTCTGTCATCTGC 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000059000 ENSRNOT00000091939 3 1 1 63 X 15590847 15590865 CAAATGCAGTGTCCTTGGG 59 15590891 15590910 AAGGTCCCTTAGGGTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061599 ENSRNOT00000081769 2 1 1 60 12 38675058 38675078 CCCAAATGCAAGAAATTCAGC 59 38675018 38675037 AAGAGCATGAACACAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063281.1 ENSRNOG00000054165 ENSRNOT00000084242 1 1 1 80 6 26434469 26434487 TCACTAAGATCCCACACGG 59 26431949 26434425 TCTTTCCTCCAACCACTCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059533 ENSRNOT00000078169 3 1 1 60 8 117815362 117815381 GAGTTGGAATAGGAGCTTGC 59 117815321 117815339 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070185.1 ENSRNOG00000047152 ENSRNOT00000071014 1 1 1 60 8 56642234 56642252 GGTGATCGACTCATAGCAG 58 56642276 56642294 CTACCGGCAGACTTACTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035854 ENSRNOT00000053977 1 1 1 60 4 17536158 17536176 CCCGATCTTGTCTGATCTC 57 17536116 17536135 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051497 ENSRNOT00000086254 3 1 1 60 4 13660073 13660093 TCTGTTACACTGTTGATCCCT 59 13660114 13660133 ACACCTGCCTAATGATCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057414 ENSRNOT00000077279 3 1 1 79 1 267487613 267487631 GCTCAGTAGTGCACATACG 58 267487552 267487571 TATGGATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056543 ENSRNOT00000090722 3 1 1 60 10 67489801 67489819 TGGCTATTTCTGCACTCAG 58 67489840 67489861 CTATCAGCCAAACACTATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 1 1 1 73 19 28041833 28044370 AAATAGGCCACACTTCAGG 57 28041778 28041797 GAATTGACATGACCTCCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000061591 ENSRNOT00000082866 3 1 1 60 9 10325792 10325813 TCTCAACTGATTCTTCACAGTC 58 10325830 10325852 AGAAGAGGGAAAGTATAGGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060078 ENSRNOT00000089276 3 1 1 60 6 119081003 119081025 CGATACAGAGAAGATTAGCATGG 59 119081045 119081063 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051871 ENSRNOT00000088373 3 1 1 60 2 112788088 112788108 TGTAACATGTGCATCAGTAGG 58 112788128 112788148 ATCAGAACACTGAGTGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U11 ENSRNOG00000053127 ENSRNOT00000084206 1 1 1 69 16 44929553 44929571 AAAGGGCTTCTGTCCTGAG 59 44929604 44929622 TCTTGATGTGGATTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055500 ENSRNOT00000078566 1 1 1 60 2 178614275 178614297 CAATACAGAGAATGTTAGGCTGG 59 178614315 178614335 AACGCTCGAAGAATTTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059522 ENSRNOT00000082224 1 1 1 60 2 144607774 144607792 GAGAAGATTAGCATGGCCC 58 144607732 144607750 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Haus2 ENSRNOG00000048933 ENSRNOT00000076309 3 1 1 60 3 112371782 112371801 GTTACTGCTGAACCACTTGG 59 112371820 112376248 TCTGAGATCTGCTGTAATCTCAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000085958 1 1 2 99 8 85605842 85605860 ATGTACCCTGGTACAGGGT 60 85619564 85619583 GCAATGCAGCTAACTAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039541.1 ENSRNOG00000002321 ENSRNOT00000003156 1 1 1 60 X 79489643 79489664 GGAAACCCATATCATCCATACC 59 79489685 79489703 GGCCACATTGAGAATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055826.1 ENSRNOG00000054392 ENSRNOT00000086920 3 1 1 60 7 10586985 10587006 TGAAAGAAGTCATAGTGGAGAG 57 10586946 10586964 TGCAAAGGCTTTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002680.1 ENSRNOG00000047795 ENSRNOT00000074222 3 1 1 60 1 80778934 80778953 TTGAACTCAGAGATCCACCT 58 80778893 80778912 ATAGCACAGGCCTTTAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103090.1 ENSRNOG00000053437 ENSRNOT00000084200 1 1 1 60 10 13780216 13780236 TCCCTTCATGGAGTTATTTGC 58 13780176 13780194 AACAAGGACTTTGAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142421.1 ENSRNOG00000056712 ENSRNOT00000084430 1 1 1 80 1 32192102 32192120 TCAGACTGCATGTCCATCC 60 32192035 32192061 CTGATCACTTCAGCTATAGTAACC 59 Novel Rattus norvegicus 81 SNORA52 ENSRNOG00000053420 ENSRNOT00000087459 2 1 1 61 4 174612722 174612740 TGGTTATGGCTGATCAGCC 60 174612765 174612783 TTCTAGGATGCTCTGGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061801.1 ENSRNOG00000058067 ENSRNOT00000081967 2 1 1 60 4 144863393 144863412 CTTAGGTTTCTGGTGAGAGG 57 144863352 144863371 TGAGCAGACAATAGGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094298.1 ENSRNOG00000026046 ENSRNOT00000038157 1 1 1 60 14 71710182 71710201 GACATAAATACAGCCCACCA 58 71710141 71710159 CAAAGCACTCCAGATTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094298.1 ENSRNOG00000026046 ENSRNOT00000038157 3 1 1 60 14 71709741 71709760 GTCCCTTGTGAACAAGAACC 59 71709700 71709718 GGATTTGTTTGCTGGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052849 ENSRNOT00000086526 1 1 1 60 4 102979220 102979240 ATCAGTGGTGTATCACATGTG 58 102979180 102979199 GGGCAGACATAGTGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059706 ENSRNOT00000083483 2 1 1 60 4 165493379 165493401 GAGGAGAAAGGCTATTTCTACAC 59 165493341 165493365 CTATTAATCATTCAGATGGTCGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043407.1 ENSRNOG00000060719 ENSRNOT00000090797 2 1 1 81 19 28142702 28147980 CATGAAGAACAGGCCACAC 59 28142639 28142657 CAGAATTGACATGACCGCC 59 Novel Rattus norvegicus 81 AABR07029573.1 ENSRNOG00000049032 ENSRNOT00000073020 3 1 1 128 10 35146956 35146976 TATGAGCTGTGGCTTCCTC 59 35146844 35146862 TGATAGTGGCACTCTGGAC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056741 ENSRNOT00000077432 1 1 1 60 4 26317956 26317976 TTCTCCACATTCTGAAATCCC 58 26317996 26318016 AAATAGTACTCAGTTCCCGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042010 ENSRNOT00000063763 3 1 1 60 1 144716480 144716498 TCAGAAGCTAAGGAGGGTC 58 144716438 144716456 GACAGTTCCAGGGTTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053854 ENSRNOT00000084639 1 1 1 60 6 133820665 133820684 CCAATGATGAGATCTGGTGG 58 133820704 133820725 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061412.1 ENSRNOG00000019158 ENSRNOT00000026000 2 1 1 100 4 122185863 122185883 CATCCCATCAAATGGCCAC 59 122185781 122185804 GAATTTCACCCTTGAGTAGAAGAC 60 Novel Rattus norvegicus 81 AABR07043626.2 ENSRNOG00000058304 ENSRNOT00000087801 1 1 1 85 19 33266504 33266522 GACTGATTTCCACAGTGGT 57 33266571 33266591 GCAGATGTGGAGGATATGG 58 Novel Rattus norvegicus 81 AABR07058233.1 ENSRNOG00000061389 ENSRNOT00000088254 2 1 1 80 7 105814716 105814739 GAGATTTCACCTCACATGCG 59 105814781 105814800 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054980 ENSRNOT00000084404 1 1 1 68 4 72327438 72327457 GCTTTGGCAGTACATATCCT 58 72327488 72327506 TAATACTTGCAAAGGGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061378 ENSRNOT00000090199 2 1 1 60 2 187976714 187976736 GATACAGAGAAGATTAGCATGGC 59 187976754 187976774 GAACACTTCACCAATTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030777.1 ENSRNOG00000059694 ENSRNOT00000091877 3 1 1 60 10 104000524 104000542 CTGTCGGTGTTGTTATGCA 59 104000482 104000500 CTATTCGTGGTGTCTGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001910.1 ENSRNOG00000051570 ENSRNOT00000078809 1 1 1 60 1 61872305 61872324 TAGTGAATGTGCCAAATGCT 58 61872264 61872283 GTGAACTGTCTGATGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005618.1 ENSRNOG00000061844 ENSRNOT00000084389 3 1 1 80 1 190369038 190369058 CTGAGAAGATTCCAGTCAGTG 58 190368899 190368998 CACGAAACCATTGTCTATCCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000052561 ENSRNOT00000086055 1 1 1 60 10 86430175 86430193 TACGTCCTCTATCCGAGGA 59 86430133 86430153 CCTATTCCAACTCCTAGTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054448 ENSRNOT00000091420 1 1 1 60 1 92720978 92720999 GGTCATTCTTCAATCAAGAGCA 59 92721020 92721038 AGAGCTACTCAGGGTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000059726 ENSRNOT00000087701 2 1 1 60 8 62293283 62293303 AATCTGCTGGTCTTCATTCAC 59 62293243 62293262 CTAATCTGGGCACTAACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012044.2 ENSRNOG00000056501 ENSRNOT00000077439 2 1 1 60 2 183573372 183573390 CAGATGGTTGTAAGCCACC 59 183573330 183573348 AAGAGCACTTCCAGAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690863 ENSRNOG00000057644 ENSRNOT00000078311 3 1 1 138 X 64034782 64034803 AAGAACTAGAAGTGGTGAACCT 59 64034591 64034683 TGGCCAAGTTTCATTGGAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053933 ENSRNOT00000078389 1 1 1 60 17 46177017 46177038 GTATGATGCTGTGCTACAAGTG 60 46176978 46176999 GGTAGACATAGCATCTTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 1 1 1 63 7 7291110 7291135 GATATCTTGTTCAGACACATGG 57 7291159 7291177 GAATGTCAACACAGCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC104053.1 ENSRNOG00000057738 ENSRNOT00000082062 2 1 1 81 18 53051750 53051970 TCGGGACCACAGAAATAGC 60 53052016 53052034 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058431 ENSRNOT00000077881 3 1 1 60 X 96801694 96801712 ACCTACAGGTAAAGCAGGT 58 96801735 96801754 CTCTTCTATGCCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056858 ENSRNOT00000090437 1 1 1 60 X 15162445 15162466 GAGCATATGGAAGGATACAGAG 58 15162406 15162424 ATGTCTGTGTCATCGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 2 2 4 80 19 17428687 17428706 ACCCTTAAGGTTTCCATCTG 57 17428534 17428645 TGAAGTTTCTGAACCTGCTC 58 Novel Rattus norvegicus 81 AABR07062799.2 ENSRNOG00000060463 ENSRNOT00000089272 3 1 1 112 6 9483842 9483861 CTTTCACGATGCTCCTATCG 59 9483936 9491653 TCTCGTTAGGTTGCCAGTC 59 Novel Rattus norvegicus 81 Rn60_7_1408.2 ENSRNOG00000054935 ENSRNOT00000086833 2 1 1 61 7 142943832 142943850 TGAGAGGCTCTCAATGCTC 59 142943875 142943893 CTCACTTGTTCTGAGCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056502 ENSRNOT00000079898 2 1 1 61 14 11337643 11337662 AGAGAAGATTAGCATGGCCC 60 11337601 11337619 AATATGGAACGCGTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028977.1 ENSRNOG00000061035 ENSRNOT00000078773 2 1 1 60 10 1406700 1406718 AGACCAAACCCTTCATCCA 59 1406740 1406760 CCAGATTTGAACAGAAGAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057644.1 ENSRNOG00000055655 ENSRNOT00000084233 1 1 1 66 7 82284581 82284601 GAGCATCTATGGAAGTAACCA 57 82284535 82284553 ATCAGAGAAGACTGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000082903 2 1 2 80 1 48321219 48321238 AATACCAGCAACAGCAACAG 59 48321279 48321930 GACTGCTACTGTTTCATTGCT 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000061633 ENSRNOT00000087642 3 1 1 62 10 49279951 49279969 AATGAGGTTTATCCGAGGC 57 49279995 49280013 TGTTGGTAAAGTGCTTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 3 1 1 66 2 198601758 198601780 ATCCACAGAAACAAACCTTCAG 59 198601807 198601825 CCCTGTGGTAAGGAATCCG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000055511 ENSRNOT00000088008 2 1 1 60 14 60986932 60986952 CAACAGCTGCATACAGTAACC 60 60986892 60986913 GACAACCCACATAAGTAGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 3 1 3 168 6 104437375 104467487 GTCCCAGAAGATCGGTGTC 60 104467618 104475049 GAGGAGTAGCTTCACCAGTG 60 Novel Rattus norvegicus 81 AABR07002624.1 ENSRNOG00000028449 ENSRNOT00000052231 1 1 1 60 1 77830076 77830094 TGTGTATGCTCACTTCCCT 58 77830034 77830052 GATTTCAACCAGAGACCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009397.1 ENSRNOG00000011827 ENSRNOT00000015746 1 1 1 60 2 96032187 96032206 ATGTTGATGCTACCTATCGG 57 96032146 96032164 TTGGCAGTGAATTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.1 ENSRNOG00000055241 ENSRNOT00000081203 1 1 1 257 3 110540885 110540903 TACAGTCTCATCTGGCAGC 59 110541125 110541143 TTCCTCTTCGTCTTCGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076282 1 1 2 89 4 32371499 32371517 TCACTTAGGTCCAAGCTGC 60 32336617 32336635 TTTCCCTCTGGTTCTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066135.1 ENSRNOG00000055764 ENSRNOT00000077570 3 1 1 81 9 3817663 3817685 TATCATTGGAAACCAGATTCCC 58 3817722 3817745 GTTATGTATGTCCTTAATAGGGCC 59 Novel Rattus norvegicus 81 AABR07069969.1 ENSRNOG00000058583 ENSRNOT00000072787 1 1 1 64 8 43144309 43144333 CATGTCTTACCAGATTTACAGTTCC 60 43144267 43144285 CTGATGCACAGAACACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA19 ENSRNOG00000060507 ENSRNOT00000077385 3 1 1 62 1 282155545 282155566 GTTTGAGAGCTAAATTAGCAGC 58 282155504 282155525 CTTGTCTGAATGTAACTGACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052432 ENSRNOT00000090900 1 1 1 60 14 111469627 111469648 TAGAAGCATTGAAAGTGACAGG 59 111469588 111469610 GAACACTGAACATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052432 ENSRNOT00000090900 2 1 1 60 14 111469627 111469648 TAGAAGCATTGAAAGTGACAGG 59 111469588 111469609 GAACACTGAACATAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058499 ENSRNOT00000090005 1 1 1 60 2 60002287 60002308 GGCTAGGTTAGTATCCCTTTCC 60 60002323 60002347 GACTCAGTGATTAACTTAAGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057577 ENSRNOT00000089803 1 1 1 71 3 25202935 25202953 ACAGTCCAGGTACATAGGG 58 25202882 25202900 TTTAGGTAGATGGGCGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016619.1 ENSRNOG00000059730 ENSRNOT00000091331 1 1 1 60 14 107180052 107180070 ATACAAGGCTGGGAGAAGG 59 107180091 107180112 CATCTCCACATAATGTTTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010370.1 ENSRNOG00000054361 ENSRNOT00000086680 3 1 1 61 2 133290138 133290156 AGAAGTTAGACCACAGGGA 57 133290180 133290201 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 1 1 1 64 5 168845244 168845304 GCTGAAATCACCATCTTTGGA 59 168845330 168845348 ATAGCTCTTTGGACTCCGT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA32 ENSRNOG00000061806 ENSRNOT00000077178 3 1 1 64 1 1628185 1628203 ATTTGCTGTGGACATGACC 59 1628139 1628158 GCTAGACAAGGAGCATATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053977 ENSRNOT00000091462 1 1 1 60 14 3492120 3492139 CAACCCAGAGATCATTACCA 57 3492079 3492098 GATCCTTCATGAGTTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027519.1 ENSRNOG00000061059 ENSRNOT00000089878 1 1 1 80 17 35129269 35129943 ATATTTGAAGGTGCCCTTGG 58 35129208 35129227 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 AABR07051658.1 ENSRNOG00000056447 ENSRNOT00000090508 3 1 1 60 3 18787799 18787819 GGTCTGGGACCTCTTATTCTC 59 18787839 18787859 TAAGTAGCAGCATCTTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000057523 ENSRNOT00000083532 2 1 1 60 1 116714858 116714879 CAACAGAAAGACAAGAACAGGA 59 116714819 116714840 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057962 ENSRNOT00000082737 2 1 1 60 14 31648839 31648857 CTTCTGTGTCACAGGTGTG 58 31648797 31648815 ACATAGACAGACACAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053830 ENSRNOT00000081749 3 1 1 60 10 94448392 94448411 CAGAGTAAACCTACCCTGTG 57 94448434 94448452 TCACAATACAGACCAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000066530 3 1 2 100 X 66516531 66516550 AAAGAATTGCCATCAACCCA 58 66516285 66516468 ATCTTTGTACCTTGGGCCA 59 Novel Rattus norvegicus 81 AABR07058423.1 ENSRNOG00000058042 ENSRNOT00000091186 2 1 1 143 7 115946622 115946641 GTTTCCTGAAGAACGGAAGC 60 115946746 115946766 GATGGGAAGGAGTTCCTAGC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000051852 ENSRNOT00000089035 2 1 1 67 2 198622172 198622190 CTTATCCATTGCACTCCGG 58 198622123 198622141 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059161.1 ENSRNOG00000051942 ENSRNOT00000082504 1 1 1 82 4 5848771 5904599 GCCTGCTGATGTATTTGTG 57 5904645 5904663 ATGAATGAATCCCAGTGGC 58 Novel Rattus norvegicus 81 AABR07003935.14 ENSRNOG00000050488 ENSRNOT00000075299 1 1 1 60 1 121219403 121219423 CTGCTGGTTATATTCCAGGAC 58 121219363 121219383 TATTTAACAGTCGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD25 ENSRNOG00000059148 ENSRNOT00000082509 3 1 1 62 1 224921638 224921656 TGCCCTATGATGAGGACCT 60 224921677 224921700 TCAGAGTTACTTATCCTCACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118841.1 ENSRNOG00000033177 ENSRNOT00000043184 3 1 1 102 5 70463453 70463473 CAGAGCCTGAAGAATTTGTGG 60 70463211 70463389 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045172 ENSRNOT00000070439 1 1 1 60 3 137613146 137613164 AACAGGCTTTGCTTTGTCC 59 137613187 137613206 ATTCAACTGCTTATAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062912.1 ENSRNOG00000040076 ENSRNOT00000061631 1 1 1 60 6 14350374 14350393 AACAATCCGAAACATAGCCG 59 14350417 14350435 CTGCCTTTCTGGACAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0674.4 ENSRNOG00000051119 ENSRNOT00000076605 2 1 1 80 X 66534983 66535002 CTTGATGAAAGCTGGAGGTG 59 66535042 66537860 AAGTCCAGCATATTTGGATCTC 58 Novel Rattus norvegicus 81 AABR07061057.2 ENSRNOG00000056830 ENSRNOT00000086338 1 1 1 60 4 103331255 103331273 GAGAGTCAGCTTCCATCAC 58 103331213 103331233 GTCTTGCCGTCTTTGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055396 ENSRNOT00000078801 3 1 1 60 14 43145701 43145722 GATACAGAGAAGGTTAGCATGG 59 43145742 43145761 GAATGCTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070270.1 ENSRNOG00000055900 ENSRNOT00000081624 2 1 1 65 8 62563532 62563550 GTCATGAGACAGGTGGAGG 60 62563484 62563506 CCACATCTCATTTGTTGCTAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA32 ENSRNOG00000058808 ENSRNOT00000077244 2 1 1 63 1 1115905 1115923 TTTGCTGTGGACATGACCA 60 1115948 1115968 GCTAGACAAGTAGCATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065150.1 ENSRNOG00000043690 ENSRNOT00000068957 3 1 1 60 6 111692481 111692500 GGCTTTGAGGTTTCAGAAGC 60 111692440 111692458 AGGCAGAAGGAAGAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053785 ENSRNOT00000085977 3 1 1 60 1 243119343 243119361 CACAGAAGAGCACATTCCT 58 243119301 243119319 GTCTCTGGTACCAACTACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059185 ENSRNOT00000078501 3 1 1 62 6 67720601 67720619 AACTTGTTGCATTTGCCTC 57 67720557 67720576 TCACAGGAATCCTTTAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022023.1 ENSRNOG00000046240 ENSRNOT00000074553 3 1 1 93 13 103376384 103376402 CACATGAGGATCAGACGGA 59 103376304 103376329 CTCTTAAGTCGGAGTTCTTGC 59 Novel Rattus norvegicus 81 AABR07072203.1 ENSRNOG00000054282 ENSRNOT00000078363 1 1 1 99 10 104739575 104739598 GGAGTTCCTTAACTTCAAATCGAG 60 104739169 104739518 TCTTCATTGTTCCTCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056535 ENSRNOT00000090084 3 1 1 60 3 123241706 123241727 TGAAACGACACAGATACTAGCA 60 123241748 123241766 CGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056391 ENSRNOT00000077891 3 1 1 60 2 130414536 130414554 GCATCAATAGGAGGCAGAG 58 130414578 130414596 TTCATGGGTCAGAACACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064257.1 ENSRNOG00000053367 ENSRNOT00000077473 1 1 1 80 6 71601522 71601546 TGAACTCAAGCAGTATAGAGCA 59 71601463 71601486 CTATTCCATTGGTCTATCTGTCTG 59 Novel Rattus norvegicus 81 AABR07064257.1 ENSRNOG00000053367 ENSRNOT00000077473 2 1 1 80 6 71601524 71601548 CCTGAACTCAAGCAGTATAGAG 58 71601465 71601486 ATTCCATTGGTCTATCTGTCTG 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000061439 ENSRNOT00000080843 3 1 1 60 1 260133626 260133646 TATGGCTCTAGTCTTGTGACC 59 260133665 260133686 TAAACAGATGGAGAAACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028568.2 ENSRNOG00000058428 ENSRNOT00000085781 3 1 1 80 17 75207300 75207319 CAAGTCAAGTGTGCAGAGTC 59 75207360 75207382 ATAGCCTGTTTGACATGTGGA 60 Novel Rattus norvegicus 81 AABR07014722.1 ENSRNOG00000036377 ENSRNOT00000054495 1 1 1 60 14 28075168 28075186 CATGCACCAGGTATCTCTG 58 28075208 28075228 CTAGTTGTGCTTGAGAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000054893 ENSRNOT00000087735 3 1 1 60 1 164952949 164952968 TGATAGGAGCGGTTATACGC 60 164952990 164953009 TTCATCTCCACGTACAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054137 ENSRNOT00000090514 2 1 1 60 2 145570979 145571000 TGGGTACTAAGTCATTTGTGAG 58 145571020 145571039 TGAGCTTAGCTATTGCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043287.1 ENSRNOG00000057292 ENSRNOT00000073554 2 1 1 81 19 27099259 27101167 GCTCAACAACGTAATGAAGTC 58 27101207 27101228 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 AABR07043875.1 ENSRNOG00000058801 ENSRNOT00000090416 2 1 1 79 19 45386115 45386139 GAGTGATGCCTGTATTTGGA 58 45386181 45386199 AAGACATCCCTTCCTCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053734.1 ENSRNOG00000033913 ENSRNOT00000050172 2 1 1 60 3 122818119 122818140 GCGTTGTAGTTAAGGACTATGG 59 122818159 122818179 AAGTACTCCTCGATGACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Miat ENSRNOG00000051028 ENSRNOT00000076905 3 1 1 60 12 50433716 50433735 CTGTCTCAGTGGTACCTTGG 60 50433758 50433776 GTAAAGCCTTTGGCTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000057997 ENSRNOT00000091218 2 1 1 60 4 71663373 71663392 GTACTGGTTCCAGTCATCCT 59 71663414 71663433 GATTCTCAGGTGTCAAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.5 ENSRNOG00000047240 ENSRNOT00000072474 2 1 1 60 1 121187530 121187548 TGATCAGTCAGGCTACTGG 59 121187488 121187506 GGCTTTGGTTATACCCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060694.1 ENSRNOG00000057158 ENSRNOT00000084916 1 1 1 80 4 90050168 90050186 TACCATCCTATTCGAGGCG 59 90050230 90050667 TTTGTTCCAGTTGCCAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060357 ENSRNOT00000078510 2 1 1 60 5 4705469 4705487 TCTGGACTGATGTCAAGGG 59 4705427 4705446 GCTTGTTTGGAAGTTCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055501 ENSRNOT00000084539 2 1 1 60 1 221277160 221277181 TAGACAATACAGAGGTGCTCAG 59 221277121 221277139 CCTTGCAAGTGTGAGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060796 ENSRNOT00000080599 1 1 1 69 12 12213902 12213921 TCTAAGGCGTGATTATTGCT 57 12213951 12213971 GTAGGAAGTATGCCATTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060428 ENSRNOT00000092221 1 1 1 67 2 4843202 4843221 TCTGAGGCATGATTATTGCT 57 4843251 4843269 TTTGAGAAGATCCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017531.1 ENSRNOG00000056186 ENSRNOT00000085910 1 1 1 80 15 25520220 25520239 GTACCCAGACATCTTCATGC 59 25518328 25520179 TTCTTAAACCATACCTGCACC 58 Novel Rattus norvegicus 81 AABR07017531.1 ENSRNOG00000056186 ENSRNOT00000085910 3 1 1 82 15 25520220 25520239 GTACCCAGACATCTTCATGC 59 25518326 25520178 GATTCTTAAACCATACCTGCAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054503 ENSRNOT00000078234 3 1 1 65 14 104467084 104467102 GAAGACGCAGAGATCAGCA 60 104467037 104467058 AACTACATGGTATGCTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106947.1 ENSRNOG00000042648 ENSRNOT00000068335 2 1 1 103 1 168184104 168184124 TCTTCCTACCATGCTTAAGGT 59 168184017 168184036 CAGATGACTCCATAGCTGAG 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054755 ENSRNOT00000082765 2 1 1 60 10 50199434 50199455 ACTGGAACGATACAGAGAAGAC 60 50199476 50199494 CACTAATTTGCGTGTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021005.1 ENSRNOG00000025964 ENSRNOT00000011332 2 1 1 60 13 53067817 53067835 AGCAAAGTGTTCTTCACCA 58 53067859 53067877 GGCATCTGTGATACTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059273 ENSRNOT00000079541 2 1 1 71 1 189735806 189735825 AACAGAACGGAGAAGATCGG 60 189735859 189735877 AATACTGGGAAGCACCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068248.1 ENSRNOG00000055670 ENSRNOT00000078129 2 1 1 80 9 92625501 92625523 TTCTGACTTACAAGAGTGAAGC 59 92625440 92625458 GCTGTATCATGCTGAACCT 58 Novel Rattus norvegicus 81 AABR07014739.1 ENSRNOG00000057494 ENSRNOT00000087499 2 1 1 60 14 29232349 29232371 AAATCCCTAGAGAAGAGGATGAG 59 29232311 29232329 ATACCCACTCCCATTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065013.1 ENSRNOG00000050329 ENSRNOT00000073196 2 1 1 60 6 103958583 103958601 ATGCTTCGGATGAATTCCA 57 103958541 103958559 CCTCTATGGTCTCCTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065013.1 ENSRNOG00000050329 ENSRNOT00000073196 3 1 1 60 6 103958549 103958567 CAGCAGAAGTGGAGGAGAC 60 103958507 103958528 TATCTTCTTGCCATTTCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056856 ENSRNOT00000089295 2 1 1 60 1 146310359 146310379 TGCAGGCTGATACTCTAACTC 59 146310398 146310419 GAGTTACGCAGTTGAATTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014478.1 ENSRNOG00000043813 ENSRNOT00000069080 2 1 1 64 14 16802955 16802975 GCCATATCTGACGTTCAACAC 60 16803001 16803019 TATGGAGGCAAATCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043823.1 ENSRNOG00000032799 ENSRNOT00000051721 3 1 1 67 19 42430543 42430562 AAACTGTTTGTCCGTTGCC 60 42430593 42430611 CATACAAGTGCCTTCTGCT 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000060186 ENSRNOT00000077664 2 1 1 60 14 32748904 32748922 AGGAGAGGCTATGTCAAGG 58 32748943 32748964 AGGCTACTAATCATTCAGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057828 ENSRNOT00000083305 1 1 1 60 6 59266337 59266359 AGAGGTTATAGCTATGCTCTGTG 60 59266374 59266397 GTTAGGCTACTAATCATTCAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002870.1 ENSRNOG00000051494 ENSRNOT00000089385 2 1 1 95 1 87734827 87734845 CAGCTGTTCTCCTTGTTGG 59 87732167 87734773 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 AABR07002870.1 ENSRNOG00000051494 ENSRNOT00000089385 3 1 1 111 1 87734843 87734861 TTGTGTTTATCGGCCACAG 59 87732167 87734773 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 U6 ENSRNOG00000055066 ENSRNOT00000083524 2 1 1 60 3 113086310 113086331 TGCTAACATTGGAATGACACAG 59 113086271 113086291 TTTCATGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 2 1 1 65 13 77850553 77850574 GAGAAGACACCAAGAGAAACAC 59 77850600 77875993 AAACCCAGCTTCCAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053509.1 ENSRNOG00000057149 ENSRNOT00000084122 2 1 1 80 3 111815941 111815961 ATCCACTGCAGATATTCTCAC 58 111815875 111815897 CTTGTCCCAAGAGAAGTGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000059208 ENSRNOT00000090598 1 1 1 60 2 251978159 251978182 GGGAAGATACCATAATCAAGAAGG 59 251978122 251978140 ACATCTGAAATGCAGTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060977 ENSRNOT00000080366 1 1 1 60 6 138014527 138014545 GGAACAGTACACAGGAGAC 57 138014566 138014587 CTTCAAGAACTTGAATGTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000054326 ENSRNOT00000081120 2 1 1 60 1 100224886 100224904 TATAGCACTGGGCTCTGAC 59 100224928 100224946 AGGATGTCAAAGGTCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017639.2 ENSRNOG00000055238 ENSRNOT00000078176 1 1 1 60 15 29547992 29548010 GGAAGACTGACATCCACGA 59 29547950 29547969 AGGAGGAGATGTGCAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000071364 1 1 2 102 18 14931900 14935969 TTGATAAGGTAATCCCGGTG 57 14936034 14936052 CCGTCATAGTTAGCATCGT 57 Novel Rattus norvegicus 81 AABR07008670.1 ENSRNOG00000047646 ENSRNOT00000075575 1 1 1 100 2 69737064 69737085 ACATACAGGAAATCCAGGACTC 60 69737141 69737165 GTTGAAGATTACTGGTCCTTTGAG 60 Novel Rattus norvegicus 81 AABR07001573.1 ENSRNOG00000057484 ENSRNOT00000089989 2 1 1 90 1 53220439 53220459 GTGGAACCCATGGAGATAGAG 60 53224600 53272857 CACCTTTGCCTTCTTCTGTG 60 Novel Rattus norvegicus 81 AABR07017669.1 ENSRNOG00000052737 ENSRNOT00000081778 1 1 1 96 15 29922270 29922481 ATTTAATTGGGTGAGCAGCC 59 29922193 29922212 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 ENSRNOG00000058420 ENSRNOT00000091110 1 1 1 80 1 214748143 214748163 TGTTCACATCCTCATCTACCA 59 214748203 214748227 CCAAAGGGTATAATTGACCTGAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058537 ENSRNOT00000079906 1 1 1 60 12 16259372 16259390 GAGAAGATTAGCATGGCCC 58 16259414 16259432 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.2 ENSRNOG00000053710 ENSRNOT00000087944 3 1 1 60 1 1888989 1889007 GGGATCGTTTCCAGATGAG 58 1888947 1888971 ATCTCAGAAGGACTATGTAAGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029956.1 ENSRNOG00000056777 ENSRNOT00000077529 2 1 1 80 10 61153135 61153158 TGTACTTCTTTGCCAACCTC 58 61153065 61153084 GGGATTGAAGGTTACAGCAC 59 Novel Rattus norvegicus 81 AABR07003935.9 ENSRNOG00000049058 ENSRNOT00000075058 1 1 1 60 1 121213088 121213108 CCTGATTACTCAGGCTACTGG 60 121213048 121213069 CTTTGGTTATACACAGGATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000053533 ENSRNOT00000085450 2 1 1 60 1 252923335 252923355 AAAGTGATTGTAGGTTGCCAG 59 252923295 252923313 CTTTCTGCATCCTCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115322.2 ENSRNOG00000054405 ENSRNOT00000085983 2 1 1 137 3 175708731 175708987 ACGTATGCTGGGTAGAGTG 59 175709088 175709106 CCTTTCTGCATTCTTCGGG 59 Novel Rattus norvegicus 81 AABR07017825.6 ENSRNOG00000061036 ENSRNOT00000089506 3 1 1 80 15 31447025 31447214 CAGATTTGCTGGGTGAGAG 58 31447257 31447276 CAGAGAAGAATTGGTTCCCT 57 Novel Rattus norvegicus 81 AABR07069324.1 ENSRNOG00000052334 ENSRNOT00000092214 3 1 1 117 8 17562177 17562195 CTCAAGGGACTGTCTCCAG 59 17562076 17562098 CTTCTGTTCGTTCACACTTGG 60 Novel Rattus norvegicus 81 AC115181.1 ENSRNOG00000058984 ENSRNOT00000082295 2 1 1 75 10 14136922 14136943 TCACAAACACATACACTCACAC 59 14136977 14136997 GTGTGAGTGTATGTGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009638.1 ENSRNOG00000030152 ENSRNOT00000043933 3 1 1 60 2 106702866 106702885 ACAACGGTTAAGAACAAGGA 57 106702825 106702846 CCTTCTCAGAAACATAGATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044959.1 ENSRNOG00000056298 ENSRNOT00000092166 1 1 1 60 20 28354887 28354905 GAGCACACTTGCTTGTGTC 60 28354843 28354861 ACCTATACCCACAGCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 2 1 1 72 7 34484785 34484803 GAATGGAAGGCATAGCGTG 59 34484839 34484859 GTAAGGAGGATGAGCACCA 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA15 ENSRNOG00000060780 ENSRNOT00000082218 1 1 1 60 2 32986445 32986468 GGCTGAATACTGTGTTCTTTAGTC 60 32986408 32986430 CTTTACTATTGCATGGTGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044394 ENSRNOT00000069661 2 1 1 60 7 78039828 78039847 CAGACCATTAGAATGCACCT 58 78039787 78039808 TCTTGATTGACTCTGCTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0847.2 ENSRNOG00000051248 ENSRNOT00000076861 1 1 1 81 13 79736657 79737033 TGAATGGCTAATTGTAGCCA 57 79737075 79737095 GCCTGATTCAGTCTAATTGGT 58 Novel Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 1 1 1 60 1 158864589 158864608 CAACAATGGAGGAGTGTTCC 59 158864628 158864651 AAACAGGTGACAACAGATACTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052196 ENSRNOT00000090582 1 1 1 60 2 3634710 3634729 TGCATCAGTAGGTAGCAGAG 59 3634669 3634688 TCAGAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000058946 ENSRNOT00000084089 2 1 1 60 1 190917941 190917959 ACTGAGCTGTCAAGAAGGG 59 190917899 190917918 ATTATGTTGCCACTTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055969 ENSRNOT00000078443 3 1 1 60 6 115712273 115712291 GTCCAAAGGCACAAATGGT 59 115712231 115712249 CAAACACAGAGGGTTTCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056986 ENSRNOT00000082922 1 1 1 60 1 136498028 136498046 TTGTGAGTGTCCCTTTCCT 59 136497986 136498004 AAGTGTACAGCTTTGGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053287 ENSRNOT00000090788 3 1 1 60 1 114337542 114337561 AGAAGATTAGCATGGCACCT 59 114337501 114337520 AATTATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017737.1 ENSRNOG00000059001 ENSRNOT00000085402 2 1 1 77 15 30440791 30440810 TTTCACTAGTGGTCCTGTGG 59 30441022 30441040 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA40 ENSRNOG00000060664 ENSRNOT00000080742 2 1 1 60 5 128079483 128079501 AAAGGCATGAAAGACAGGT 57 128079522 128079543 TGTACAGTGAGTTGTTAGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054982 ENSRNOT00000079315 2 1 1 60 3 136403884 136403905 TAGAATGAGAGCATGACATCTG 58 136403923 136403944 CATGGATCTGCAGAATTACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053170 ENSRNOT00000082948 3 1 1 66 9 24194571 24194589 CCATTGTTCTCCTGGTGTG 59 24194523 24194543 GCACAAATAATGCACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053512 ENSRNOT00000080126 2 1 1 60 1 200218107 200218126 ACATGCTACAGTGATGAAGG 58 200218066 200218088 ACTACTCAACCTCTACTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061807 ENSRNOT00000079387 2 1 1 61 1 146766593 146766611 GAGAAGATTAGCATGGCCC 58 146766550 146766569 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017812.1 ENSRNOG00000057587 ENSRNOT00000081826 1 1 1 80 15 31282081 31282281 GGCTCCAATTAAACTGGGTG 59 31282324 31282342 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052375 ENSRNOT00000077954 2 1 1 60 1 35752545 35752565 TTCACATGTGTCAGTAGATGG 58 35752505 35752525 GTAAGAACACTGAGCAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000056925 ENSRNOT00000087467 1 1 1 60 1 216764243 216764261 CTGGAAGGAAATGAGCAGC 59 216764285 216764303 TGCTGTCTGAAGGTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065352.1 ENSRNOG00000059223 ENSRNOT00000084880 3 1 1 83 6 123286608 123286627 AGATTCACCACGTTGTTTCC 59 123286542 123286562 ATCCCATTCCAGAGCAGTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052871 ENSRNOT00000084931 1 1 1 60 1 167899405 167899426 GTATGATGCTGTGCTACAAGTG 60 167899366 167899387 GGTAGACATAGCATCTTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD28 ENSRNOG00000060156 ENSRNOT00000086925 2 1 1 61 1 224922537 224922558 TTGATACACTGATAACTCCGTG 58 224922578 224922598 GCCATCAGAACTCTAACATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.1 ENSRNOG00000048336 ENSRNOT00000070836 3 1 1 60 2 231875466 231875485 GCTGCTAATCTGCAACTCTG 59 231875506 231875526 TCCATCACCATTGCTAAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.3 ENSRNOG00000051485 ENSRNOT00000086722 1 1 1 60 15 30853227 30853249 TGCACCTATCAGACTACTTACTC 59 30853266 30853287 CACTGAGATATTGCACATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008890.1 ENSRNOG00000047140 ENSRNOT00000072080 3 1 1 114 2 77425887 77425908 TTGGACCAGAGAAACACCTC 60 77425792 77425816 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07004971.1 ENSRNOG00000054215 ENSRNOT00000081955 1 1 1 80 1 172971932 172971951 AGTCACTTTGTTCTACGGGA 59 172971994 172972016 GACACCACCTTGTTGTCTG 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000054476 ENSRNOT00000080214 3 1 1 60 3 86024969 86024987 TGTCTGAGACATCTCCTGC 59 86024927 86024946 CTTCCATTCCACTTCAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059327 ENSRNOT00000083913 3 1 1 60 1 116758191 116758212 CAACAGAAAGTCAAGAACAGGA 59 116758152 116758173 CTCAGCCTAATCCTATTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061124 ENSRNOT00000082915 3 1 1 60 1 116982236 116982257 CAACAGAAAGTCAAGAACAGGA 59 116982197 116982216 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059031 ENSRNOT00000087362 1 1 1 60 3 34622530 34622548 GCTGATCTGACTGGCTAGG 60 34622571 34622590 GAGGGATTCACATTGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032751.1 ENSRNOG00000060359 ENSRNOT00000077553 3 1 1 150 18 79854914 79854932 TCCTTAGTCACGCAAGTCC 59 79855048 79855066 AGAAGTATCGCCACCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037058.1 ENSRNOG00000053827 ENSRNOT00000081308 2 1 1 134 X 11082209 11082235 TCCTAATTTCACCTTTGAGTGC 59 11082329 11082348 ACCAATTCCAAGTACCAAGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055549 ENSRNOT00000081735 2 1 1 60 20 12708971 12708991 AGCTATCACCCATTCATAGCC 60 12709011 12709031 AAACACTGTATTAGCCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055690 ENSRNOT00000080297 1 1 1 60 6 47324019 47324039 GTTGGATGAAAGAAGAGACAC 57 47323979 47323999 ATTCAGATGACCATAGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000053822 ENSRNOT00000091174 3 1 1 60 7 80088009 80088028 CCGCTACAGATTGAACTCCT 60 80087968 80087988 TTAGTCATGTGCAGAAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052404 ENSRNOT00000086677 2 1 1 60 20 39121400 39121419 GCATTGTAAATGGAGTTGCT 57 39121359 39121378 AACAGGTAAATGTCACCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Herc1 ENSRNOG00000051671 ENSRNOT00000089336 2 1 1 80 8 72159842 72160910 GCTCATCAGAACAGAGTAATGAC 59 72160949 72160968 AATAGTGCCATCATTGCCAC 59 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000054998 ENSRNOT00000080569 3 1 1 60 5 159232920 159232942 CCTTTAAGATGACCGATATGCTG 60 159232960 159232980 ACTTGTACTCACTTGTGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000053801 ENSRNOT00000090034 2 1 1 60 7 2874378 2874397 GAAGAGGAAATTCAGACGGG 58 2874419 2874438 AGCAGAGTTGTAGAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044089.1 ENSRNOG00000019773 ENSRNOT00000026767 3 1 1 81 19 57663762 57663780 GTACGCAATAACCGTTTGG 57 57662320 57663717 CACACCTTTCTCACCTGTG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058934 ENSRNOT00000088886 1 1 1 60 5 25546281 25546302 TCTTGGGTCAAGGATCTATGAG 59 25546323 25546341 CCAAAGTTTGCTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058934 ENSRNOT00000088886 2 1 1 60 5 25546273 25546293 AGCATCTATCTTGGGTCAAGG 60 25546315 25546333 TGCTTGGAGGTTCTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 2 2 4 115 X 73466670 73467007 TTCATGAAGGGTTTGATGGA 57 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000055313 ENSRNOT00000082213 3 1 1 60 3 58503771 58503791 GTGAATACTCTCATAGTGCCC 58 58503812 58503831 ATGGAGGCAATGGTTAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059147 ENSRNOT00000091446 3 1 1 61 20 66378 66399 GGCTGCAATATCTTGTCTACAC 60 66419 66439 GCTAGTTAGATCAGCAGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034739.1 ENSRNOG00000058590 ENSRNOT00000086514 3 1 1 80 11 86094802 86095954 TGACTGTCCTAGACCAACC 58 86095998 86096016 CCTTGTCAGTCTTGAGCTC 58 Novel Rattus norvegicus 81 AC141344.2 ENSRNOG00000060478 ENSRNOT00000085003 3 1 1 61 5 154438151 154438174 CACTCAAGTTTATCAAGAAGAGGG 60 154438113 154438132 CTCCTCCCTCTTTCTCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049326.2 ENSRNOG00000054188 ENSRNOT00000082201 1 1 1 80 5 117442683 117442701 CATGGCAGGGAGTCTACAG 60 117442618 117442638 GTGTATCCATTTCTGCCCTG 59 Novel Rattus norvegicus 81 AABR07049326.2 ENSRNOG00000054188 ENSRNOT00000082201 3 1 1 83 5 117442688 117442706 GTAGACATGGCAGGGAGTC 60 117442620 117442640 GTATCCATTTCTGCCCTGTG 59 Novel Rattus norvegicus 81 AABR07053968.1 ENSRNOG00000060762 ENSRNOT00000084221 1 1 1 60 3 133894434 133894452 GTCCATCCTCATACTCGCT 59 133894392 133894410 TCCCTATGACCATATGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017110.1 ENSRNOG00000005869 ENSRNOT00000007696 3 1 1 60 15 11650684 11650705 AGAGGAAATGGCTAGTGATGAG 60 11650726 11650744 GATGGCTTCTTTGGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054615 ENSRNOT00000077466 1 1 1 60 13 5099908 5099927 TATACGAGTAGCTGCACTCC 59 5099950 5099968 CAACAATGGGCCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048280.1 ENSRNOG00000017640 ENSRNOT00000023713 2 1 1 60 5 70749641 70749660 GAACTTTGGCTCATTTCCGA 59 70749600 70749620 AGTCCATTCACATCTTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054703 ENSRNOT00000079067 1 1 1 60 3 123957109 123957128 TGAGATAGGGCTCTTGAGTG 59 123957068 123957087 GGAACCTTAGCTCCCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057954 ENSRNOT00000082134 3 1 1 60 15 1315045 1315066 TGATTAAGTGAATCTGGCTGGT 60 1315006 1315025 GCACATGGAGTAGTGAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.1 ENSRNOG00000050758 ENSRNOT00000072193 1 1 1 60 1 83436575 83436596 GAATATCCACAGAACATGACCC 59 83436536 83436554 AGCCCATTCAGCATCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.1 ENSRNOG00000050758 ENSRNOT00000072193 3 1 1 60 1 83435613 83435634 GAGAACCATGAACCAGAAAGAC 59 83435574 83435594 CCATAGCTACTGTTGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000052180 ENSRNOT00000089892 1 1 1 60 3 75024278 75024296 GGAGTTCTGGGCTGTAGTG 60 75024317 75024338 TATTGATGCCGAACTTACTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045399 ENSRNOT00000070666 1 1 1 60 13 101869813 101869831 CCTGAATGCACCTGATCTC 58 101869771 101869791 GTACTAACCAGACCTGATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049353.1 ENSRNOG00000008953 ENSRNOT00000011847 1 1 1 60 5 118226338 118226356 TTCCGCTCGTGATTTACCT 59 118226295 118226313 GATGGTTCAGGCATTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031485.1 ENSRNOG00000061292 ENSRNOT00000092199 1 1 1 60 18 15316569 15316588 CACACCTGTGCTTAATGTCC 59 15316609 15316629 CACACTCTGACATACTTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044555 ENSRNOT00000069822 1 1 1 60 15 43258145 43258163 ATGTGCCTGATCTTGTCTC 57 43258103 43258121 TCCCATCCGAGAACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057547 ENSRNOT00000081872 3 1 1 60 6 28838156 28838175 TCTTTGCTCAAGGTACAGGA 59 28838198 28838216 AGGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054523 ENSRNOT00000079075 2 1 1 60 4 106293143 106293162 TCAGTGCTGAATCACATGTG 59 106293185 106293203 TGGGCAGACATAGTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058922.1 ENSRNOG00000056365 ENSRNOT00000086547 3 1 1 64 7 143323109 143323127 CCTCATACTGGGCCTTGAC 60 143323155 143323173 CATGGACAACAACCGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000054041 ENSRNOT00000078163 2 1 1 60 15 4158930 4158948 CTTTGTTGCCTTTGGGAGG 59 4158888 4158909 AACTGTAGAACTTCCTGATTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566029 ENSRNOG00000052725 ENSRNOT00000084666 2 1 1 80 7 125368099 125378974 ATGCACAACAACTACACTGC 60 125368038 125368057 GAGTAGATCCAAGACCAGCA 59 Novel Rattus norvegicus 81 AABR07029863.2 ENSRNOG00000057661 ENSRNOT00000087455 2 1 1 60 10 56590737 56590757 AGTTGAGGGAAACATCAATCC 58 56590777 56590797 CTGACATTACTTCCGGTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000056183 ENSRNOT00000086099 1 1 1 80 10 104084166 104084185 CCTGCTTTCCTTTGACTGTG 60 104084105 104084126 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056452 ENSRNOT00000088371 3 1 1 60 X 11888069 11888089 TGGAACCGTACAGAGATTAGC 60 11888029 11888049 TGCTTCACCAACTTGTATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061589 ENSRNOT00000083115 2 1 1 60 5 109253809 109253829 TGTTGTGTCACATATGCATCC 59 109253769 109253791 ATTAAGTACAGACATAGCCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061589 ENSRNOT00000083115 3 1 1 60 5 109253809 109253828 GTTGTGTCACATATGCATCC 57 109253768 109253790 CATTAAGTACAGACATAGCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000053555 ENSRNOT00000090324 1 1 1 63 20 10281935 10281953 GGGCAACTTCCTTGTTCTG 59 10281980 10281998 CAGTAATTTCCCTCAGCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017936.1 ENSRNOG00000050460 ENSRNOT00000091428 2 1 1 80 15 34897576 34897595 TCATGTGACATTCTGTGGTG 58 34897066 34897537 CGGTGGATACTTCCATTATAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061541 ENSRNOT00000077155 1 1 1 60 15 83813178 83813196 GAGAAGATTAGCATGGCCC 58 83813136 83813154 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068852.1 ENSRNOG00000053409 ENSRNOT00000092036 3 1 1 106 9 121991690 121991709 ACTTCACTCAGGAAGAGTGG 59 121991772 121991998 CAAATTGTAACCTATAGCAGTGAGG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000053776 ENSRNOT00000084844 2 1 1 60 19 1480533 1480555 CAATACATCCTGATCTCAGAAGC 59 1480495 1480516 TTTCCCATCCAAGTACTATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051959 ENSRNOT00000085691 2 1 1 60 18 34224693 34224716 CACACTTGATCAAATAGGATGACC 60 34224733 34224753 CCTCTTGAATGAAGATGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054981 ENSRNOT00000081481 2 1 1 60 19 35661438 35661456 GCATCAGTAGGTGACAGAG 57 35661478 35661498 TTCACAGGTCAGAACATTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061145 ENSRNOT00000079587 2 1 1 60 15 44254190 44254209 TGTCACTGTGCATCAGTAGG 60 44254232 44254250 CACAACACTGGGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055548 ENSRNOT00000077478 2 1 1 60 10 88679297 88679317 GTTGAAGAAATCGACCTTCTG 57 88679257 88679276 ACTTGTCTATCCTTGACCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000055609 ENSRNOT00000091914 2 1 1 62 7 140197940 140197958 TTCAAGCAGACGCCTAGAG 60 140197896 140197915 TCTGTTGAAGTCCAGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053851 ENSRNOT00000084804 2 1 1 60 3 4022475 4022496 GAGAAGATTAGCATAGCTCCTG 58 4022436 4022454 GTAGGGAAACGCTTTACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057971 ENSRNOT00000090229 1 1 1 60 7 17460923 17460944 CAGATCGTATAAATCTTTCGCC 58 17460964 17460983 ACTCAGAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691301 ENSRNOG00000056993 ENSRNOT00000081909 2 1 1 60 1 230207677 230207696 CACTATGCCACCACTATGAC 58 230207718 230207737 GAACATAGCAGCCTATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052139 ENSRNOT00000080561 3 1 1 60 18 78641833 78641852 TTCTGAAATTGGACCGACAC 59 78641873 78641893 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060700 ENSRNOT00000080566 1 1 1 60 3 167017072 167017091 TACATCCGATGGTGAAGGTG 60 167017031 167017051 GGTAAGAACGGATACTACACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060700 ENSRNOT00000080566 3 1 1 60 3 167017073 167017091 TACATCCGATGGTGAAGGT 58 167017031 167017051 GGTAAGAACGGATACTACACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060678.1 ENSRNOG00000049140 ENSRNOT00000071086 3 1 1 80 4 89252358 89252381 AGATTTCACCTCACATGCGA 60 89252422 89252442 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000061580 ENSRNOT00000088601 1 1 1 60 18 63230084 63230102 CACTCCGGATGTACTGACC 60 63230042 63230063 AATTAAGTAGTCGAGCTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067649.1 ENSRNOG00000055155 ENSRNOT00000085339 1 1 1 60 9 56455062 56455080 TGGATGACAGCAATCACTC 58 56455104 56455122 ACATCACCCTCTCCAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052454 ENSRNOT00000090231 2 1 1 60 3 48776805 48776824 TGCATTAGTACGGGACAGAG 59 48776764 48776783 TCACAGGCCAGAATACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060483 ENSRNOT00000091400 3 1 1 105 X 119210182 119210200 GATCAGGACAGGTACAGCA 59 119210095 119210113 TACAGGCCTCTAGAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052686 ENSRNOT00000084115 3 1 1 60 18 28589986 28590004 AAGGATGGAGGGACTACTG 58 28589944 28589964 CCACAAGGTAAGTAGAAATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.1 ENSRNOG00000048337 ENSRNOT00000071413 2 1 1 82 1 222483988 222484007 CAGTAAGAGGAAGAGGAGGA 58 222483922 222483940 TCTACCTCTTGGAGGTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054178 ENSRNOT00000081350 1 1 1 69 3 70877751 70877769 TAGGTTTGGCTGCTTTGTC 58 70877797 70877820 CACTTAATGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058384 ENSRNOT00000084759 1 1 1 60 18 14119283 14119301 CCTGTGCATTAGAAGGTGG 58 14119321 14119343 GGTCAGAACTCTTAAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029111.1 ENSRNOG00000046888 ENSRNOT00000074560 1 1 1 60 10 7696247 7696265 CTCACTATGCAGCTCTGAC 58 7696289 7696307 GAATTTGAGGCCAGTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0405.3 ENSRNOG00000051142 ENSRNOT00000076145 3 1 1 60 8 40505528 40505549 CTTCTTGGGAATCTATGTGGTC 59 40505568 40505588 AGCAATCAGAACAATCAAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054101 ENSRNOT00000081044 1 1 1 60 10 76628767 76628786 CATGGTTGATTCTGTTCCCT 58 76628726 76628746 TTGACCTTTGGGAAGAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000056593 ENSRNOT00000087950 1 1 1 60 X 95831807 95831825 GTACCCGAAACCATGAGGA 59 95831849 95831867 CTTAGAGGCAGCTTCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U11 ENSRNOG00000059869 ENSRNOT00000086455 2 1 1 60 6 108403977 108403997 CATCAAGAGATTTCGGAAGCA 59 108404019 108404037 AGGACCAATGATCACCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053921 ENSRNOT00000084007 1 1 1 60 7 37021875 37021894 CGACTGCTGTGTCATATGTG 59 37021915 37021935 AGCATAGACATAGCCTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034736.1 ENSRNOG00000053527 ENSRNOT00000084433 2 1 1 60 11 85992698 85992717 CTATGAGCTGATCCAACCAC 58 85992738 85992758 AGTGATTGAGACAGTGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055399 ENSRNOT00000091870 2 1 1 60 7 104532905 104532925 ATTTCAGAAAGGCTGCATGAG 59 104532865 104532888 CATCTTTGGCCATGGTATTTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000059127 ENSRNOT00000086157 2 1 1 60 20 8817270 8817288 GTCAGTGTCCAGAACTGGT 59 8817228 8817249 ACCACTGTAACTTAATCTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065688.1 ENSRNOG00000055807 ENSRNOT00000081540 1 1 1 102 6 139345521 139345623 ATTTCCAAGCTGTGTCCTG 58 139345689 139345707 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 AABR07015687.1 ENSRNOG00000060369 ENSRNOT00000082217 2 1 1 109 14 70478895 70478916 TCTACAGATTCAATGCAATCCC 59 70478805 70478823 AGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061417 ENSRNOT00000082960 2 1 1 60 6 3513068 3513089 GGCAGTGAGATACTATTATCGC 59 3513029 3513047 GAGTACCATGGATGAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.6 ENSRNOG00000058444 ENSRNOT00000085381 2 1 1 86 17 44744806 44744824 ATCCAGGGCATCACTAAGC 60 44744738 44744756 GGTCTCCTCGTAGATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 3 1 1 121 4 164253019 164253037 CCTAAGGAGACTCAAAGGC 57 164249769 164250650 ATGTTTGTCACCAACATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060800 ENSRNOT00000080371 1 1 1 60 4 51105243 51105266 CTTTATAGAAGATGATGACCTCCC 58 51105206 51105227 TATATCCTCAACCAAGGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045535.1 ENSRNOG00000050094 ENSRNOT00000071513 3 1 1 60 20 50877780 50877798 TCAAGGTCCAGACAGAAGC 59 50877738 50877757 TACTGAGCTGTAACACTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058257 ENSRNOT00000080282 3 1 1 60 4 96741192 96741215 CATTCTAAAGTCTGAAGGCTACTG 59 96741155 96741174 TTTGTTTGTCCTTGGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125982.1 ENSRNOG00000045580 ENSRNOT00000073852 2 1 1 108 7 130408084 130408102 CAAGCCAGATGCGATTCTC 59 130408176 130408194 TTGCAGAGACTGATAGGCG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051473 ENSRNOT00000091194 2 1 1 60 20 51711736 51711757 TGTGTCACATGTTGCATAAGTG 60 51711697 51711718 AAACTTAGCGTAGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106225.1 ENSRNOG00000061557 ENSRNOT00000073359 3 1 1 60 20 7888018 7888036 CTGAACTCTGGGATCCTCC 59 7888057 7888078 GTAGTGTATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055280.1 ENSRNOG00000046183 ENSRNOT00000074061 1 1 1 60 7 1045611 1045631 TTCTAGTGAAGTTAGCCCACC 60 1045571 1045590 TTCTTTGGAAGGAGCAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062500.1 ENSRNOG00000041515 ENSRNOT00000063268 2 1 1 60 4 180090963 180090983 ATTGGAAGAAGGAAGACTCTC 57 180090923 180090941 CTAGCAGTTGCTCAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055788.1 ENSRNOG00000056930 ENSRNOT00000087352 3 1 1 60 7 10062676 10062694 AAAGCAAATGTGCCAGGAG 59 10062634 10062654 GTCATCGATGATCTCGTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061658 ENSRNOT00000078352 2 1 1 60 11 33789918 33789936 TGCGATTGTTGCTAATTGG 57 33789960 33789978 CCAATAGGAGAACCAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034673.1 ENSRNOG00000059680 ENSRNOT00000084380 3 1 1 116 11 83483454 83483493 CTTGATCATCTTCGTGGGC 59 83483356 83483375 TCTAAGTCATTCTCACCGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060871 ENSRNOT00000087024 1 1 1 60 5 5838809 5838830 CATCAGAACGATACAGAGAAGC 59 5838851 5838869 ATGAACTTGCGTGTCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051897 ENSRNOT00000086373 1 1 1 60 9 14334111 14334129 AGTAGGTGGCAGAGAAGAG 58 14334069 14334090 AGACATTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054066 ENSRNOT00000080268 3 1 1 62 18 58224001 58224022 ATTGGAACAGTACAGGGAAGAG 60 58223960 58223981 CTCATGAATTTGCATGACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055754 ENSRNOT00000085057 2 1 1 71 5 151099252 151099271 TTGCTTCACAACACAAACAC 58 151099305 151099323 TCTGCATGTCATCCTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033056.1 ENSRNOG00000057596 ENSRNOT00000083815 3 1 1 60 11 3039560 3039578 CAGACCAACAAGGACTGGA 59 3039518 3039539 CATCCATGACAAAGATGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052338 ENSRNOT00000087210 3 1 1 60 11 31093687 31093705 CCTCCTGTGGTTTATTGGC 59 31093727 31093747 TGTTTCTTCCAGAGGGAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053926 ENSRNOT00000087288 1 1 1 60 18 8605214 8605232 ATAAGGATTGCAGGTGTGG 58 8605253 8605274 CTCTCCTTCTGAGTACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000053952 ENSRNOT00000087915 3 1 1 60 19 56268661 56268682 CCTGCTTAAAGCATTTGATACC 58 56268700 56268721 TTTGCCTTACTCTATGGTAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061915 ENSRNOT00000088883 1 1 1 60 18 7407116 7407137 TTCCATAATAGAGAAGGAGCTG 57 7407158 7407176 TTTGGAGGTTCTAGGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056172 ENSRNOT00000084761 1 1 1 60 5 91135019 91135037 GATGAAGAACGCAGCTAGC 59 91135060 91135079 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014132.1 ENSRNOG00000052854 ENSRNOT00000073831 1 1 1 81 14 1696423 1696445 TCACCTCACACCAGAATGG 59 1696489 1696508 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07043829.1 ENSRNOG00000049520 ENSRNOT00000070941 1 1 1 60 19 42778071 42778091 GTCTCTGAAGCTAGACATTCC 58 42778031 42778051 CTTGGGACTCTAGACCTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007592.1 ENSRNOG00000051732 ENSRNOT00000082468 1 1 1 102 2 20724291 20724310 GGGCTGATGAGCATTTACTG 59 20724204 20724228 TGCATGTTTATGTGCTCACAG 60 Novel Rattus norvegicus 81 AABR07021220.1 ENSRNOG00000058486 ENSRNOT00000091496 3 1 1 87 13 61363616 61363635 GGTAGCACAAAGTGAAGCTG 60 61363686 61363706 AACTACCGGTTTGAACAACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054586.1 ENSRNOG00000051007 ENSRNOT00000075530 3 1 1 68 3 162607775 162607793 GATCGCTGTGAGTTCAAGG 59 162607725 162607744 TTTCTCTGTAGCTCTGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.6 ENSRNOG00000052050 ENSRNOT00000087983 1 1 1 102 6 138640050 138640152 ATTTCCAAGCTGTGTCCTG 58 138639966 138639984 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 AABR07065651.6 ENSRNOG00000052050 ENSRNOT00000087983 2 1 1 102 6 138640050 138640153 CATTTCCAAGCTGTGTCCTG 60 138639967 138639985 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044703 ENSRNOT00000069970 1 1 1 60 18 27871035 27871057 GATCTCGGAAGAATAGAAACCTG 59 27871075 27871095 AGCCATAGACTTCCACAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056867 ENSRNOT00000088354 2 1 1 60 3 11384152 11384172 CATGAGGTTCCCAAATGTGAG 59 11384112 11384131 ATATAGGCTTCCACTGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052483 ENSRNOT00000077905 3 1 1 60 5 128800431 128800451 AGCCCTAGATGATCTTGTCTG 59 128800391 128800411 GTTACTCATACACCCTGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.3 ENSRNOG00000052328 ENSRNOT00000080060 3 1 1 60 9 45741836 45741856 CAGGTAATGCAGTTTGTTGAG 58 45741796 45741814 TAACCAGCCGAATCGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068712.1 ENSRNOG00000056280 ENSRNOT00000088483 3 1 1 60 9 116297998 116298018 GGGACATATCTGAAGCAAGTG 59 116297958 116297976 AGCTTGACATAGGGCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128303.2 ENSRNOG00000059712 ENSRNOT00000085048 1 1 1 80 6 93371452 93371471 CAAGACAGCAAGGTAGACAC 59 93371514 93371534 TGGAGGAAGACGTGTACAG 59 Novel Rattus norvegicus 81 AABR07068980.1 ENSRNOG00000057314 ENSRNOT00000075124 1 1 1 60 8 4220564 4220583 TCAACACCTCCTTTAAGCAC 58 4220601 4220624 CGCCTATCAATCAGATTAAACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061720 ENSRNOT00000091385 3 1 1 60 20 32354871 32354889 AGAAGATTAGCATGGCCCT 59 32354912 32354931 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131806.3 ENSRNOG00000058218 ENSRNOT00000090787 2 1 1 60 19 22748248 22748267 ACTGTTCCATTCAATGTGCT 58 22748207 22748226 TCTGAAACTGCTTCTTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034425.1 ENSRNOG00000051745 ENSRNOT00000079347 3 1 1 62 11 71078314 71078333 CTAGCTGTCCTGGAACTCAC 60 71078358 71078376 GCAGGTGGATCTCTGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055249 ENSRNOT00000087721 2 1 1 60 4 114560985 114561006 AATAAACTACCCTGTGTACACC 58 114561026 114561045 GCATTCACGATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027212.1 ENSRNOG00000057683 ENSRNOT00000081494 2 1 1 80 17 19538237 19538259 CTTCAACTATACCGTACCTATGC 59 19538299 19538319 GGAACACAGAGTTCCATCC 58 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058979 ENSRNOT00000086113 2 1 1 60 7 711724 711743 CATGGACACTATGAACGCAC 59 711683 711701 TCTCAGATAGCTGTAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045014 ENSRNOT00000070281 1 1 1 60 9 67192642 67192662 CCTGATCTTGTTCTGTGTTGG 59 67192682 67192702 CTTCCTCCCATTCATAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061501 ENSRNOT00000085842 3 1 1 60 9 83766137 83766159 GAGATACCATGATCAAGAAGGTG 59 83766099 83766119 ATCTGGAGTACAATGGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Xlr4a ENSRNOG00000055822 ENSRNOT00000091365 1 1 1 80 X 153079228 153079247 CAATCTGGCCTTTGAAACTG 58 153077619 153079186 GATTTCTTACTAGGCCCTGG 58 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058080 ENSRNOT00000085998 3 1 1 60 7 2221845 2221864 CATGGACATTTCGAAAGCAC 58 2221804 2221822 TATCAGACAGGTGTAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dgke ENSRNOG00000002338 ENSRNOT00000076587 2 1 1 80 10 76399418 76399438 TCGTAGTGGAACTAACATGGG 60 76398161 76399376 GTGACATCGAACACCTGGA 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000051525 ENSRNOT00000090158 1 1 1 60 7 37366401 37366420 ACAGAAGACGAAGACATCCC 60 37366438 37366461 CTCACATATCCTTAATGAAGGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000059569 ENSRNOT00000081585 3 1 1 76 6 79174008 79174026 TAAGAGCAAGCCATCTGGT 59 79173950 79173970 GGCAAAGGAAACAAGTATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115384.1 ENSRNOG00000058613 ENSRNOT00000090425 2 1 1 85 8 43705625 43705645 CCTATCAAGTCTGTTCCTGGA 59 43705692 43705851 TAGCATGCAGACTGTTGTG 58 Novel Rattus norvegicus 81 AABR07021080.1 ENSRNOG00000055999 ENSRNOT00000085493 1 1 1 70 13 56025843 56025862 TTAACACTTGTGAGCCTCTC 58 56025897 56025915 TAGGGACTGACACATCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021080.1 ENSRNOG00000055999 ENSRNOT00000085493 3 1 1 71 13 56025842 56025862 TTTAACACTTGTGAGCCTCTC 58 56025897 56025915 TAGGGACTGACACATCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD111 ENSRNOG00000057770 ENSRNOT00000084121 1 1 1 61 19 43396398 43396422 GATTCACAATCATGTCTCTTCTCTG 60 43396440 43396459 AGGCCTGATCAGATACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000057770 ENSRNOT00000084121 2 1 1 68 19 43396385 43396404 AGCCTGAAGTGATGATTCAC 58 43396432 43396453 GATCAGATACACAGAATCTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 1 1 2 96 17 14947112 14947667 AAAGGTTGCAGAGATGCTG 59 14946566 14947026 GACTAAATTCCTTCTTCCTCTCAC 59 Novel Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 2 1 2 98 17 14947112 14947667 AAAGGTTGCAGAGATGCTG 59 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000061201 ENSRNOT00000080461 2 1 1 67 6 75622884 75622902 CTTATCCATTGCACTCCGG 58 75622835 75622853 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053625 ENSRNOT00000088617 3 1 1 87 11 25084273 25084291 CTTCAGCAGCACATATCCT 57 25084342 25084360 TTTCTCATGAACTCGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000039674 ENSRNOT00000012267 3 1 1 60 11 82813887 82813907 CATTCAAGGAAACAGACAGAC 57 82813927 82813947 ACACCAATCGTATCTTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034404.1 ENSRNOG00000041444 ENSRNOT00000063197 2 1 1 67 11 68586074 68586097 GACATTGGAAGAAGGAAGATTCTC 60 68586030 68586049 ATCTAGCAGTTGCTCAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058633.1 ENSRNOG00000046123 ENSRNOT00000075490 1 1 1 67 7 128762937 128762955 CTACGAAGCACACTGAGTG 58 128762888 128762908 CTTGGAGTGACAAATGAACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060985 ENSRNOT00000087853 1 1 1 60 17 12202084 12202104 AGAGGCTGAGTCTATGTTTGG 60 12202044 12202064 GTTAGGCTACCAACCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA11 ENSRNOG00000054983 ENSRNOT00000081653 1 1 1 60 4 157637077 157637097 AGTCTTAACAGGGTAGTCTGG 59 157637118 157637137 CAGCCCTCCTAAACTGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052008 ENSRNOT00000082632 2 1 1 60 11 39194522 39194540 TGGTAAATCACTTGGCTCG 58 39194563 39194582 TCACATTAATTCTCGCAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053635.1 ENSRNOG00000024256 ENSRNOT00000031588 1 1 1 140 3 117766146 117766164 CTCTTCAAGTATCGTCCGC 58 117766268 117766287 GGAAAGGGAGGATAGATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053635.1 ENSRNOG00000024256 ENSRNOT00000031588 3 1 1 141 3 117766146 117766164 CTCTTCAAGTATCGTCCGC 58 117766269 117766288 TGGAAAGGGAGGATAGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068417.2 ENSRNOG00000048666 ENSRNOT00000072142 2 1 1 60 9 104325137 104325156 CCTGGAACTCAGAGATCCAC 60 104325179 104325197 GGTGCATGCCTTTAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057747 ENSRNOT00000088773 1 1 1 60 7 114975556 114975575 GGCGTGATTATTGCTAATCG 58 114975598 114975616 GTCCAGCTCTAGAACCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053669.1 ENSRNOG00000011715 ENSRNOT00000015599 2 1 1 81 3 119499337 119499356 CTGTTATTGTAGCACCACCA 58 119499402 119499420 GATGTACTTGGGTGGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027811.5 ENSRNOG00000055437 ENSRNOT00000084298 3 1 1 96 17 44738995 44739013 TAGCTCTCCGTCTTCTTGG 59 44738917 44738935 AGGAGCTCAACAAACTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052,ENSRNOT00000088581 1 2 6 80 10 74882925 74882947 GATCTATCAGTTCCCAGATTGTG 59 74882987 74883172 GGGATGCTTTCCTTTAGGG 58 Novel Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076750,ENSRNOT00000085052,ENSRNOT00000088581 2 3 6 80 10 74883737 74883981 GAAAGATGAAGAGCTGCGG 59 74884023 74884043 AAAGCCAGTTAGTGAGTCTCC 60 Novel Rattus norvegicus 81 Nwd2 ENSRNOG00000051837 ENSRNOT00000079269 3 1 1 82 14 46150400 46150418 AAAGCTGCTACCAAACTGC 59 46147630 46150355 TCCTCGATAGCTGAGAACAG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000055497 ENSRNOT00000080369 2 1 1 60 7 126242458 126242476 TCCACTGCATACACTGACC 59 126242416 126242435 AGTGGATTCCCACTTCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052417 ENSRNOT00000083771 1 1 1 60 4 12884154 12884172 CACTGTGCTTCTGAAGGTG 59 12884112 12884130 TTCAGACAGGTCAGAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073073.1 ENSRNOG00000050747 ENSRNOT00000075780 3 1 1 60 4 157710091 157710109 ATCCTAACAGTGGGAGCAG 59 157710133 157710151 GTACAGGGTCCTAAAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068179.1 ENSRNOG00000046217 ENSRNOT00000072563 2 1 1 63 9 87667052 87667070 AAAGGGAGACAGGAGTGTC 59 87667096 87667115 AATGTCACCAAGTAAAGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027096.1 ENSRNOG00000060557 ENSRNOT00000081895 1 1 1 81 17 14353467 14353486 TGATCCAGATGATCCAGGAC 59 14353528 14353553 TAGCTTGGCTCTGATATCTGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052350 ENSRNOT00000079024 2 1 1 61 17 19781404 19781422 GAGAAGATTAGCATGGCCC 58 19781447 19781465 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050006.1 ENSRNOG00000058676 ENSRNOT00000084118 2 1 1 88 5 148066137 148066155 GTTCAAAGGGATCAGCTGG 59 148066205 148066226 TGTGAGCTATACGGATGAGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053195 ENSRNOT00000082013 1 1 1 60 7 102032216 102032234 ATGCTTACTTTGGCAGCAC 59 102032174 102032193 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.2 ENSRNOG00000055056 ENSRNOT00000075587 1 1 1 80 4 173878385 173878405 AACACATGGAAACACTGGA 57 173878323 173878343 CTTGAATTCTGTTGGTGAAGC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057046 ENSRNOT00000077843 1 1 1 60 17 28893294 28893312 ATTCTTCAGTAGGCGGCAG 60 28893252 28893271 GATGTTCACAGGTCAGAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054088.1 ENSRNOG00000059597 ENSRNOT00000088315 1 1 1 102 3 139735319 139735342 GAGAAGAGAATCTAAACAGGCG 59 139735160 139735178 CTCATTCCCTCTGCCAGAG 60 Novel Rattus norvegicus 81 AABR07054088.1 ENSRNOG00000059597 ENSRNOT00000088315 2 1 1 104 3 139735319 139735342 GAGAAGAGAATCTAAACAGGCG 59 139735158 139735176 CTCTCATTCCCTCTGCCAG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045251 ENSRNOT00000070518 2 1 1 62 7 64958041 64958059 ATCCTGAAGCAACAAGCAC 59 64957997 64958015 TTAGCTTCTGGCTCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096473.3 ENSRNOG00000055700 ENSRNOT00000082862 3 1 1 107 7 120202644 120235754 GCCTAAAGGAAAGGCAGGA 60 120430176 120430195 CAGACAGCATGAACTCACAC 59 Novel Rattus norvegicus 81 AABR07047089.1 ENSRNOG00000055063 ENSRNOT00000082188 3 1 1 86 5 18964141 18964159 TGTACCTCTTTGGCTTGGT 59 18964203 18964271 CCAGTTTATTTCTAAGACTCTGACC 59 Novel Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076492,ENSRNOT00000076064 2 2 2 80 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70512263 70512283 CAGAAATGATGAATCCTCCGT 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053419 ENSRNOT00000084084 1 1 1 60 7 92031018 92031040 TGATACAGAGAAGATGATCGTGG 60 92031059 92031078 AATGCTTCATGAGTTTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067805.1 ENSRNOG00000021406 ENSRNOT00000029708 1 1 1 60 9 64704410 64704431 TCTGAGATAGAATACTCTGCCA 58 64704371 64704389 TATTGCCACTGTAGTGACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057420 ENSRNOT00000087871 2 1 1 60 7 105747445 105747463 CAGATGGCTGTACTTTGCT 58 105747403 105747422 TAAATCAGCTTTAGCCACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000060638 ENSRNOT00000081633 2 1 1 60 7 121202509 121202529 AACATGCTACAGTGATGAAGG 58 121202548 121202569 CTACTCAACCTCTACTGTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041735 ENSRNOT00000063488 3 1 1 60 7 14118545 14118563 CTATGGCCATGTTGCTCTG 59 14118503 14118524 GTCTAACCTTGCTTAGCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013583.1 ENSRNOG00000051598 ENSRNOT00000072902 3 1 1 80 2 244926736 244926759 GAGATTTCACCTCACATGCG 59 244926675 244926694 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA29 ENSRNOG00000053082 ENSRNOT00000077633 3 1 1 60 10 48902772 48902790 GTGCCATGATCTGAAGGGA 60 48902810 48902832 CTCCAACCATTTCATATAGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000060059 ENSRNOT00000089500 2 1 1 60 10 65833127 65833146 TCCTGGCTACAAATAACAGC 58 65833086 65833105 TAACCCATGTAGGGAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057694 ENSRNOT00000081451 1 1 1 60 9 96338194 96338212 GAGAAGATTAGCATGGCCC 58 96338152 96338170 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076600 3 1 3 147 20 44608169 44608187 TGGAGGAAGGTGTTCAGAG 59 44602948 44602966 TTGTCCTGAAGCTGAGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056885 ENSRNOT00000083789 1 1 1 60 7 38987899 38987921 TTAATAGAGGCCATAGAGGAGAG 59 38987861 38987880 ATGCTCATAGGTCAGAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000051992 ENSRNOT00000080582 2 1 1 60 9 11141302 11141320 GGCAGTCCTTTGTTCATCC 59 11141260 11141278 AGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 2 1 1 86 7 13055386 13055406 TTCTTTGGAGGCTCCTCAG 59 13055453 13055474 CCACTCCAAATTGTAAACACCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD86 ENSRNOG00000061010 ENSRNOT00000085750 2 1 1 60 4 10161530 10161552 CAGAGCTCCCTAACTTACATAGG 60 10161572 10161590 CCAGACACCATGACTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005939.1 ENSRNOG00000054593 ENSRNOT00000078318 2 1 1 80 1 207639358 207639379 GTGGTTTACCTGGGAAGAC 58 207639422 207639441 TCGCATTAAATCACAGCCTC 59 Novel Rattus norvegicus 81 AABR07002351.1 ENSRNOG00000060136 ENSRNOT00000091103 2 1 1 83 1 71766499 71766956 GAGAATGAGATCAAGGTCTGGT 60 71767000 71767018 ATTTGTCTCTGGCAGTGCT 60 Novel Rattus norvegicus 81 AABR07015639.1 ENSRNOG00000060489 ENSRNOT00000074568 2 1 1 81 14 68165547 68165569 TCACCTCACACCAGAATGG 59 68165484 68165503 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07037487.1 ENSRNOG00000057658 ENSRNOT00000088630 3 1 1 69 X 22417816 22417834 TCAAGAAGTGCCTGAGGAC 59 22417763 22417781 CAGTAGGGTTCTCTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037545.1 ENSRNOG00000060708 ENSRNOT00000089821 3 1 1 90 X 23416605 23416747 CCTTCTACACAGGTTGGGA 59 23416801 23416819 TTGTTTGCTCTGTAGCACC 58 Novel Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000052555 ENSRNOT00000083087 1 1 1 61 2 198389031 198389049 AAGAAGACCCGCATCATCC 60 198389074 198389092 TTGAGTTCTTCGTCGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 2 1 1 68 2 209779346 209779365 TTCAGAGATACGTTGCCAC 58 209779397 209779415 TATGAAGGGTAGCCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055366 ENSRNOT00000080513 2 1 1 60 1 177432150 177432168 GCTTCTGGTGTCACATGTG 59 177432108 177432126 CCGAGCATGGACATAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040393.1 ENSRNOG00000050970 ENSRNOT00000075783 3 1 1 60 X 99390172 99390190 CATCCTTATTGCCTCCCGA 59 99390212 99390232 GTCACCATAGTCGTACAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566225 ENSRNOG00000055742 ENSRNOT00000082227 2 1 1 61 X 137197418 137197436 GACCGAAAGTGAACGTCTC 59 137197458 137197479 CCTCATTTGATTTCTGAAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071746.1 ENSRNOG00000018786 ENSRNOT00000025383 1 1 1 82 8 128943721 128943742 GCCAGAGTAAACATTAACACTG 58 128943659 128943679 TCCACCACAGATTTCATGTC 58 Novel Rattus norvegicus 81 AABR07030911.1 ENSRNOG00000032442 ENSRNOT00000052258 1 1 1 60 10 108726194 108726214 GGATGATGGTGAATACAACCC 59 108726154 108726173 ATACTCAAACTGGTCAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690902 ENSRNOG00000057013 ENSRNOT00000087819 3 1 1 62 X 132424706 132424724 GACCGAAAGTGAACGTCTC 59 132424662 132424684 CCCTCATTTGATTTCTGAAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058443 ENSRNOT00000088513 1 1 1 63 8 92174898 92174916 ATCCTTTGCACTTTGGCTG 59 92174943 92174961 TTTGAGGCTGAGTTTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029931.1 ENSRNOG00000058040 ENSRNOT00000090113 3 1 1 88 10 60455155 60455175 GAAACCTGCTAATTGTTGTCC 58 60455220 60455245 GAGATCAGAGAAGGACATATTGAG 58 Novel Rattus norvegicus 81 AABR07066339.1 ENSRNOG00000048566 ENSRNOT00000074536 2 1 1 78 9 8026007 8026025 TCCCGGAAAGAATTCCAGG 59 8027007 8027028 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007997.1 ENSRNOG00000061053 ENSRNOT00000084896 2 1 1 82 2 38217685 38217707 TCACCTCACACCAGAATGG 59 38217752 38217771 AGGAGTGTTCCTCTTTCTCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060922 ENSRNOT00000078605 2 1 1 60 8 71593785 71593803 TGTGTCACATGTGCATCAG 59 71593743 71593764 AGAACAGAGTGTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054145 ENSRNOT00000079293 2 1 1 66 8 69124880 69124901 CAGTGATGTTGTAATTTGCGTC 59 69124928 69124946 ATTCAGCTTTCTGACAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060814 ENSRNOT00000083104 1 1 1 60 8 91751323 91751342 GAGTTGGAATAGGAGCTTGC 59 91751365 91751383 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053088 ENSRNOT00000089896 3 1 1 83 8 48799220 48799238 GAGACAGAACTGCCTCCTG 60 48799155 48799174 TTGTGTCATTCTTGTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060736 ENSRNOT00000083997 2 1 1 60 8 13778525 13778547 GGGAAATACTGTGATCATGAAGG 59 13778487 13778508 CCAGAGCGTCATAGATAAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 1 1 1 66 8 126975981 126976789 TAAGTTCAGCTCGCAGAGG 60 126976819 126976837 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000046358 ENSRNOT00000073866 2 1 1 61 8 130370052 130370073 CCTAAATGTGCTTGATTTCCTC 58 130370012 130370032 AATATTTACCAGGCCTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000054710 ENSRNOT00000086582 3 1 1 61 8 72701739 72701758 CAGCAGTTCTTTCCTGTTGG 60 72701697 72701721 GATGCCAGATAGTGAATTTCTATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105645.4 ENSRNOG00000059654 ENSRNOT00000077364 2 1 1 63 8 48802081 48802100 AATAGACTCCCTGGACAGAG 58 48802037 48802055 AAGGCATACTTCGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052664.1 ENSRNOG00000053741 ENSRNOT00000091115 3 1 1 80 3 68305197 68305220 AGATTTCACCTCACATGCGA 60 68305136 68305156 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AC096430.1 ENSRNOG00000050327 ENSRNOT00000072344 1 1 1 60 8 82512065 82512083 GGCCTTGAACTCAGATCCA 59 82512023 82512041 GGCACATGCCTGTAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057413 ENSRNOT00000089787 1 1 1 60 8 49084543 49084564 GGAATAACGCAGAGATTAACAC 58 49084504 49084523 GAATGCTTCATGACTCTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053242 ENSRNOT00000088307 2 1 1 61 8 122685161 122685179 CATGGTTGTAACCCACTGC 59 122685118 122685136 ATCTGGCCAGCAATCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045487.1 ENSRNOG00000037628 ENSRNOT00000057081 2 1 1 60 20 48980283 48980304 TCTAATTGGGCTGAATCATTGC 60 48980325 48980343 GTTCCAGCATCAAGGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050354.1 ENSRNOG00000050976 ENSRNOT00000075541 2 1 1 88 5 162138729 162138748 CGGTCGAGATCAAGAAAGGA 60 162138654 162138677 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 AABR07050354.1 ENSRNOG00000050976 ENSRNOT00000075541 3 1 1 89 5 162138729 162138748 CGGTCGAGATCAAGAAAGGA 60 162138653 162138676 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 AC128962.1 ENSRNOG00000000478 ENSRNOT00000000560 1 1 1 60 20 5491319 5491338 CGTAAGAGTCCTTATGTCGC 58 5491278 5491298 GTATGAAGAGGATGCTGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052528 ENSRNOT00000079001 1 1 1 60 3 113388701 113388719 CCTGCATATTCCTACGACC 58 113388743 113388761 GCATGGTTTGTCTCCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024908.1 ENSRNOG00000055634 ENSRNOT00000078775 2 1 1 60 16 21807237 21807255 CTGAATTCCCAATTGCACC 57 21807195 21807213 TCTAAGAAGTTCACGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000051455 ENSRNOT00000084450 2 1 1 60 3 148345002 148345021 ACATGCTACAGTGATGAAGG 58 148344961 148344983 ACTACTCAACCTCTTCTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC116236.2 ENSRNOG00000059729 ENSRNOT00000089937 1 1 1 82 14 34329144 34329518 CTCTGAATGGGTCCAGGTC 60 34329558 34329582 GTAGGAATTCAACATAGATCCACTG 60 Novel Rattus norvegicus 81 AC127076.2 ENSRNOG00000059601 ENSRNOT00000077387 3 1 1 84 5 5056158 5064254 GCTTATGTTCGAGATAACAGCA 59 5064299 5064317 ATACTCACCTGTTGCAGGG 59 Novel Rattus norvegicus 81 AABR07062775.1 ENSRNOG00000054672 ENSRNOT00000084160 3 1 1 108 6 7395658 7416112 GACTTCTCTTTGGGCTTGG 59 7395568 7395586 ATTCTTGCTCCAGCTTCTC 58 Novel Rattus norvegicus 81 AABR07047008.1 ENSRNOG00000057195 ENSRNOT00000088415 2 1 1 81 5 14878831 14878852 GTAGGAGTGACAGAAAGAACAC 59 14878893 14879496 GTTTGTCGCTAGTCCTTCAC 59 Novel Rattus norvegicus 81 AABR07047008.1 ENSRNOG00000057195 ENSRNOT00000088415 3 1 1 82 5 14878890 14879492 CTTGTGAAGGACTAGCGAC 58 14879537 14879556 TTCTCATCCATGGACCAGAG 59 Novel Rattus norvegicus 81 AABR07015358.1 ENSRNOG00000058705 ENSRNOT00000089606 2 1 1 93 14 53046363 53046382 CTGCCACGTGTTAATTAGCA 59 53046438 53049436 AAGTCTCTGCCTTGAGGTC 59 Novel Rattus norvegicus 81 AABR07000382.1 ENSRNOG00000060990 ENSRNOT00000081586 1 1 1 80 1 11770913 11770934 CAATTAGACGCAATAAGGAGAC 57 11770972 11772156 CAAGGACATCCTTTAATTGCTG 58 Novel Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 3 1 1 66 4 84936197 84936215 TTTGGAACAACTGGTCAGC 59 84935889 84936170 ACAACTGAGAATGAGAAGATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047062.1 ENSRNOG00000056516 ENSRNOT00000089701 3 1 1 80 5 17912032 17917049 TATGGAGAGCTATCAAGATCCAG 59 17917086 17917107 CTCTGATGTTGAAGATATGGCA 58 Novel Rattus norvegicus 81 AABR07000436.1 ENSRNOG00000060284 ENSRNOT00000079436 2 1 1 84 1 12483554 12485326 CAGAATAACGTTGTACAGGTCTC 59 12483492 12483510 CTTGCATTAGCATGCTGCT 59 Novel Rattus norvegicus 81 AABR07015547.1 ENSRNOG00000058778 ENSRNOT00000083114 1 1 1 80 14 62674707 62674726 GCATGTGCATTTAACGATGG 59 62674768 62677440 TCCTCTTGTCTTCTTTGCTG 58 Novel Rattus norvegicus 81 AABR07047213.1 ENSRNOG00000055469 ENSRNOT00000079997 1 1 1 69 5 24280098 24280116 CTAACTTGTCTGCGAGCAG 59 24275454 24275473 TCACCCATTGAAGTAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000090103 3 1 2 82 1 13380375 13381756 CTCCAGGAGGAGTGAAACG 60 13380311 13380332 TATCAGTTAACTGTTTCCCGGA 59 Novel Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 3 1 1 60 10 66652860 66654439 AATTTCAGAACATCCGGTGG 59 66652819 66652838 ATAATCAGGTAGCATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061155.1 ENSRNOG00000058418 ENSRNOT00000083209 2 1 1 83 4 107202354 107209826 AGTAGGAAGATCTTCAAAGCC 58 107209871 107209889 AGACAGTACCTTCCAAGGA 57 Novel Rattus norvegicus 81 AABR07030221.1 ENSRNOG00000053130 ENSRNOT00000084816 3 1 1 65 10 76633570 76633588 GCTCACCTAGGAACCAGTC 60 76633617 76641213 GTTCTTCACAGCACCTCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07061240.1 ENSRNOG00000060647 ENSRNOT00000084745 3 1 1 81 4 111442530 111443896 CTGCAACTTCCTTAGCAGC 59 111442467 111442485 AAGAAGGCTGACCAGAGTC 59 Novel Rattus norvegicus 81 LOC102550026 ENSRNOG00000058323 ENSRNOT00000080713 2 1 1 82 5 51150927 51183619 GAGCCCTTGAAAGAGATGAC 58 51150864 51150882 TGGGAGAAACAGTGTTCCT 59 Novel Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 3 1 1 73 10 78686096 78686117 AATATCCACATGGAGACATCTG 58 78686150 78687017 AATGTAGCTGACACGGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061261.2 ENSRNOG00000060697 ENSRNOT00000085515 1 1 1 81 4 112646258 112646276 GACTATCTCCTGTGGGCAG 59 112644463 112646216 TCACTTCGGAACTTTCTTTCAC 59 Novel Rattus norvegicus 81 AABR07048199.1 ENSRNOG00000057026 ENSRNOT00000089749 2 1 1 80 5 66945035 66945053 CCATTCAGGCTCACTACCA 59 66943707 66944994 ATCATTCTAAACCACCCTTCCT 59 Novel Rattus norvegicus 81 AABR07073038.2 ENSRNOG00000059100 ENSRNOT00000090348 2 1 1 81 4 118329829 118330538 AATACGCTGGAGACAGAGC 60 118330579 118330601 GAAGATACAGATTCCATCCTGTG 59 Novel Rattus norvegicus 81 AABR07000639.1 ENSRNOG00000056218 ENSRNOT00000089617 2 1 1 61 1 20737264 20737282 TGATTTATCCACTGGCCCA 59 20735993 20737239 TTCTGACGGCTCCATTCAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 2 1 1 93 14 93085196 93085214 GTAGCTGCCACATGTACTG 58 93085268 93086734 TTAATGTTCAGGTTCCATGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016365.1 ENSRNOG00000055299 ENSRNOT00000088596 2 1 1 82 14 98016025 98017731 CACGACCTTAGCCTTTCTG 58 98015961 98015980 TTCACTGAAATTCCACTGCA 58 Novel Rattus norvegicus 81 AABR07000670.1 ENSRNOG00000060376 ENSRNOT00000089045 2 1 1 89 1 22757721 22757742 GGTTCTGAATGAACATTTCGGT 60 22757470 22757672 CTTGTGTATTTGCTCTCGGG 59 Novel Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 2 1 1 64 14 103887467 103887486 CATCAGACTGGAAGACTCAG 58 103887174 103887440 ATCCAGTGCTGAAGGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048636.1 ENSRNOG00000054600 ENSRNOT00000083780 2 1 1 81 5 85624319 85624340 TGTCAACTTCATCTTCCTTCTG 58 85596438 85596457 ATTCTCTGGGTTCCATCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.2 ENSRNOG00000057722 ENSRNOT00000085871 2 1 1 84 1 24077106 24081556 CCTTGAACACGGAACAACG 60 24081604 24081622 ACAAGTGATCTGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07048899.1 ENSRNOG00000059047 ENSRNOT00000086922 2 1 1 64 5 96373228 96373246 CTTTCATTACCGCAGCCTG 59 96378142 96378163 GCTTGAGGAAATACTTTGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048966.1 ENSRNOG00000059515 ENSRNOT00000088835 1 1 1 80 5 98793890 98812083 AGGAAGTACAGGATGTCGG 59 98812127 98812145 CAGAAGTCCCAAATGGGAG 58 Novel Rattus norvegicus 81 AABR07016722.1 ENSRNOG00000056561 ENSRNOT00000081421 1 1 1 80 14 112624943 112626109 ACAACCAAGCCTTATCATCTG 58 112626149 112626169 GTGAATATGCTGAGCTCTCAG 59 Novel Rattus norvegicus 81 AABR07061848.1 ENSRNOG00000052200 ENSRNOT00000089502 1 1 1 81 4 149372112 149372131 CCACATTGCCTGATACAAGC 60 149372169 149382972 CGTCTTAAGACACTGAGAATATCAC 60 Novel Rattus norvegicus 81 AABR07016731.1 ENSRNOG00000054144 ENSRNOT00000086364 1 1 1 80 14 113149797 113149974 CAGACATATCTTTAACCAGTGGC 60 113150014 113150032 GGTGTATCAGCACTCCTGG 60 Novel Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 3 1 1 60 5 111966001 111966021 TTTACGAAGTACTGAGGATGG 57 111966043 111978207 TCACAAGTTGTCTCAGCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07016934.1 ENSRNOG00000058309 ENSRNOT00000081520 3 1 1 81 15 5142800 5142819 GAGAAGACAGTAGATGGCCT 59 5141630 5142756 ATGACTCCAGGAACTTGGG 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000077705 3 1 2 80 4 157752869 157752892 GAAGACAGATATGAAGTGTACCAC 59 157752927 157753759 GCCAAAGGATATCTTCATTCCTG 60 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 1 1 2 60 4 157753874 157753892 GCGTTCTTTCCATCCACAG 59 157753916 157754150 CAGGGCTACTGAGAAACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.2 ENSRNOG00000053967 ENSRNOT00000085994 1 1 1 62 10 102861674 102861692 TTGTGTCATCACTTGCCAC 59 102863824 102863843 CATGGCGGATGATATCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001054.1 ENSRNOG00000055337 ENSRNOT00000089405 3 1 1 86 1 35884478 35885090 AAGTGCTTGTGAGAATGCT 58 35884410 35884429 CGCATCTTTATTGCTCTGAG 57 Novel Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 2 1 1 61 5 123663586 123667080 GGTCTTATTATTCCTTGATGGTGG 59 123663548 123663568 AACCAAGAGCTCCTCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017208.1 ENSRNOG00000055393 ENSRNOT00000083766 2 1 1 63 15 17954205 17954223 GTACCCGATGGTGTCTTCC 60 17951597 17951618 CCTGTAGTTCTTCATGACATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030894.1 ENSRNOG00000054934 ENSRNOT00000088954 2 1 1 80 10 108051941 108053060 TCAATCTGGCAAACCTCCT 59 108051879 108051897 TGTGAGGCATTTGTTCCTG 58 Novel Rattus norvegicus 81 AABR07001233.1 ENSRNOG00000053328 ENSRNOT00000087610 2 1 1 80 1 39011832 39011852 GAAGATGCCTTGGATGATCAG 59 39008708 39011791 CTTCTCTGACCAACCTCCTC 60 Novel Rattus norvegicus 81 AABR07062404.2 ENSRNOG00000051444 ENSRNOT00000078325 3 1 1 90 4 175052247 175054389 CTGCCTCTTTCTTATAAAGGTTCC 60 175052180 175052199 TAAGACGCTGTTTAGGGAGG 59 Novel Rattus norvegicus 81 AABR07017506.1 ENSRNOG00000052920 ENSRNOT00000084371 3 1 1 84 15 24379134 24379152 CAGACATTTCACCTCCCAG 58 24379200 24379406 GATCATCAAGCCCTCTGTC 58 Novel Rattus norvegicus 81 AABR07001444.1 ENSRNOG00000057561 ENSRNOT00000086762 1 1 1 82 1 44201798 44227777 AGGTGGAGGGACTAGAGAC 59 44227822 44227841 AATGATCAGATGCCAATGGG 58 Novel Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 1 1 1 65 1 45409405 45409526 GTAATAGAAGACCCGGTTTATGTG 59 45409363 45409381 GGTCCTCACGATCACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 3 1 1 61 4 181677098 181677119 GAATACAAGGACAACTTCAAGG 57 181676576 181677076 CAAGCCTGGGTGTTTACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 2 1 1 61 15 30868151 30870079 CAACAACCAGGGAACAGAG 58 30868108 30868127 GGGAACTTCTCAGTTCTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031665.1 ENSRNOG00000061811 ENSRNOT00000085143 3 1 1 99 18 24290776 24293910 CACATGTATGTGCAGGAGC 59 24293973 24293991 TACGGGAATGAAACGACCC 60 Novel Rattus norvegicus 81 AABR07001591.1 ENSRNOG00000051938 ENSRNOT00000082276 1 1 1 83 1 53842127 53842312 TTCATCCAGGAAAGAAGAGCA 60 53842357 53842375 TAGCCTTGCTGTGCTAGTG 60 Novel Rattus norvegicus 81 AABR07031762.1 ENSRNOG00000054852 ENSRNOT00000092001 3 1 1 65 18 33155988 33156007 CCACAGGATGAGAATCACTG 58 33142296 33142315 GGCTTCTTACACTTCAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC115371.3 ENSRNOG00000054637 ENSRNOT00000077945 3 1 1 99 15 33503026 33504936 CAACAATTCTGGTCAGAGGG 59 33508523 33508541 TCCCATCTGTCTGTGTTGG 59 Novel Rattus norvegicus 81 AABR07032123.2 ENSRNOG00000058146 ENSRNOT00000078631 3 1 1 106 18 47959241 47959260 CAAAGTGTCTCAGGGAAGGA 59 47953514 47953534 CTTTCTTCCATTCTTGCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063511.2 ENSRNOG00000055114 ENSRNOT00000089260 2 1 1 88 6 32581102 32581903 GAAAGCAATGCCCTTCGTC 60 32581032 32581053 CTTATCGGTTCCATATGCACAG 59 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 3 1 2 85 18 50430251 50434457 TACCACCAGTGTGCTAAGG 59 50430184 50430202 TTTAGCATCTTCTGCGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063558.1 ENSRNOG00000056987 ENSRNOT00000091189 2 1 1 60 6 35293678 35309656 CATTCATGAGATTCTGAATCGC 58 35309675 35309695 ATAGCTCAGTACTCACTGGAG 59 Novel DesignRelaxed Rattus norvegicus 81 AC132635.1 ENSRNOG00000061631 ENSRNOT00000089689 3 1 1 89 15 43742817 43742835 GTTCCCGAATGCTTGACTC 59 43742885 43746856 TGGTCACATACTTTGATCTCCT 59 Novel Rattus norvegicus 81 AABR07063575.1 ENSRNOG00000061601 ENSRNOT00000086586 3 1 1 88 6 35788228 35788246 CCTCTGAGTCACTCAGCAG 60 35790455 35790474 GTCAAATCGGAGTCTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018183.1 ENSRNOG00000053041 ENSRNOT00000079248 3 1 1 87 15 45237984 45238002 CAGAACTTGCCACTGACTG 59 45231645 45237937 CGGGCTTGATACTAATGAATGAG 60 Novel Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 1 1 1 60 6 36846742 36855872 AAACAGCACTGTTGACAGG 59 36855895 36855914 CCATTAAATGTCGCAGGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018262.2 ENSRNOG00000054573 ENSRNOT00000085802 1 1 1 80 15 49552957 49552975 AAGGTGGGTCAAAGTACGG 60 49547655 49552915 TCTGCATTAATGCACACTTGG 60 Novel Rattus norvegicus 81 AABR07063654.2 ENSRNOG00000056738 ENSRNOT00000078812 1 1 1 64 6 39982734 39982752 TTGCCAGCCCAATATTCTC 58 39981947 39981965 TTGAGAGGATGACTCTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 1 1 1 65 1 70055227 70055245 TCTTCATGCCTTTCCCTGG 60 70055272 70071745 GGCTGGTACAATATGCATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050466.1 ENSRNOG00000059002 ENSRNOT00000086073 3 1 1 61 5 166262794 166262812 AAGCCTACCGAAGACACAG 59 166259302 166259320 GGAATTGGGAAACCTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018476.1 ENSRNOG00000056070 ENSRNOT00000086211 3 1 1 81 15 60689343 60691063 AAAGGAGAAAGATGCTCCCTC 60 60689282 60689300 GATCACCTGCCTCTGACTC 60 Novel Rattus norvegicus 81 AABR07050644.1 ENSRNOG00000056236 ENSRNOT00000087806 2 1 1 81 5 171914123 171914599 CCATTATCAAAGCAAGGTGGA 59 171914642 171914660 TGTTCTGCCATACGTTGAC 58 Novel Rattus norvegicus 81 AABR07063743.1 ENSRNOG00000051468 ENSRNOT00000091185 3 1 1 80 6 45384348 45389173 TAGGATGCAGAATTCCCGG 59 45384286 45384305 GTTGCCTTCCAGAAACATCC 60 Novel Rattus norvegicus 81 AABR07018503.1 ENSRNOG00000057305 ENSRNOT00000086501 3 1 1 80 15 62239219 62239238 TGCTAAACATTCACTCTCCC 58 62239281 62240250 GTTGGGAACACTATCGTCC 58 Novel Rattus norvegicus 81 AABR07050652.1 ENSRNOG00000057101 ENSRNOT00000091594 1 1 1 80 5 172775756 172775776 TGTAGTGTGCTGTCAATTCTC 58 172774184 172775716 CAAACACAGATTCCTACAGGC 59 Novel Rattus norvegicus 81 AABR07002682.1 ENSRNOG00000056832 ENSRNOT00000084874 3 1 1 97 1 80944243 80944262 ATTCTGGGAAGTGTAGTCCG 59 80944319 80951100 GATGGAGACCTTTCTGAAAGGA 60 Novel Rattus norvegicus 81 AABR07051248.1 ENSRNOG00000056977 ENSRNOT00000077813 3 1 1 80 3 3243836 3243855 CGTTCAATATAGACCTGGCC 58 3243898 3244608 GTCCTTCCACCTTATGTGC 58 Novel Rattus norvegicus 81 AABR07019019.1 ENSRNOG00000057930 ENSRNOT00000089703 2 1 1 125 15 83942054 83945356 CTTGTGGAGTGAAGCTATGC 59 83941948 83941972 CTCTACGTGACTTAATAATCCTTCC 59 Novel Rattus norvegicus 81 AABR07051250.1 ENSRNOG00000057532 ENSRNOT00000078344 2 1 1 82 3 3478020 3478041 AAGGGAGAACTCATCCATTCTC 60 3478084 3482193 CCATTTCTCCAGATGGGCA 60 Novel Rattus norvegicus 81 AABR07002784.2 ENSRNOG00000060634 ENSRNOT00000088189 2 1 1 109 1 84959120 84959140 GAAACATCCAAGGGTCTTTGG 60 84953510 84959050 CTTCTTCCCTCTGTGGAGAC 60 Novel Rattus norvegicus 81 LOC102548225 ENSRNOG00000053223 ENSRNOT00000084356 2 1 1 62 18 71885835 71885854 GGAACTTTGGCCGATTTCTG 60 71886821 71886839 CTCAACCAGTGTGAGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111292.2 ENSRNOG00000055447 ENSRNOT00000085531 3 1 1 189 3 4007732 4012304 GAACACAGAAGTCCTTGCC 59 4012457 4012475 GTTCCAACTTCAGGGTGTC 58 Novel Rattus norvegicus 81 AABR07063873.1 ENSRNOG00000058832 ENSRNOT00000082019 3 1 1 80 6 53271920 53275984 ACACTCCTAGGTGATGATTCTC 59 53271861 53271882 CAGCAAACAAATCATCCTTACC 58 Novel Rattus norvegicus 81 AABR07032593.1 ENSRNOG00000052987 ENSRNOT00000079714 3 1 1 61 18 72921501 72921519 TCTTATCTCCCAGGGAGAC 57 72920715 72920733 CATTGAAACATCCCAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC142138.2 ENSRNOG00000059375 ENSRNOT00000091127 1 1 1 80 3 9499239 9499257 AATGTACTGAGCCTCCTGG 59 9499301 9500641 GCAGATTACAAGACACCGC 59 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000080938 1 1 2 80 15 98620284 98620302 CAGAGTTGTGCTGGATCAG 58 98620340 98620471 GGATTCCTTTACCTTACTTTACTCC 59 Novel Rattus norvegicus 81 AABR07019334.1 ENSRNOG00000061865 ENSRNOT00000086389 1 1 1 80 15 100149038 100149057 AGAAGAAACAACGGACTCCA 59 100145175 100148998 AGGAGATCTGAGTATCTTGCTG 59 Novel Rattus norvegicus 81 AABR07064468.1 ENSRNOG00000057565 ENSRNOT00000091064 3 1 1 82 6 81618394 81622265 AGAGAATCACCTGGCTTGG 59 81618330 81618348 CTCGCTTGGGTAAACTGTG 59 Novel Rattus norvegicus 81 AABR07051403.1 ENSRNOG00000055854 ENSRNOT00000079302 1 1 1 60 3 10543043 10543064 AATCACTTCCTGTCTCTGAGAG 59 10543085 10544089 TTTGAGTTGGCAAGTCAGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07019383.1 ENSRNOG00000056294 ENSRNOT00000080477 3 1 1 81 15 103286822 103286932 AGGAACCAGATCTGTGGAC 59 103286974 103286995 CACATCAACTCCAGAACTTGTC 60 Novel Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 1 1 1 60 18 80294293 80294311 CCTTCTCTTACTTGGCTCC 57 80294335 80300851 TCAGAGGGTAGAAGTCCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064584.1 ENSRNOG00000056792 ENSRNOT00000085837 1 1 1 63 6 86022849 86022867 ACTGAGAGTAGACTGCCTG 58 86020058 86020078 TCAATATTCTCATCTCCGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07051485.1 ENSRNOG00000059802 ENSRNOT00000080186 3 1 1 81 3 13825545 13837677 AGTCTAGTTGCAGCATGAC 58 13825482 13825500 GTTAGAAAGTTCGCCTCCT 57 Novel Rattus norvegicus 81 AABR07019437.2 ENSRNOG00000052178 ENSRNOT00000091356 1 1 1 80 15 105406986 105407004 ATAGGTGGACACAACCACC 59 105407046 105407559 TCAGTCATTCATTAAGTCGGC 59 Novel Rattus norvegicus 81 AABR07019437.5 ENSRNOG00000057052 ENSRNOT00000087221 1 1 1 80 15 105481062 105481870 ACTTCAATGTGTATGCTCCG 58 105481910 105481931 CAGCTTAACGATTTCCTAATGG 58 Novel Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 1 1 1 60 15 105845865 105849405 CATAGACATAGACATGAACGCT 58 105849426 105849444 TTCATGGACGTTTGGTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020367.1 ENSRNOG00000054848 ENSRNOT00000079581 3 1 1 94 13 23456518 23456538 GAAGGAGAAAGAAGGCATCAG 59 23456594 23468409 GCTTGAATTCTCCTTGCCC 59 Novel Rattus norvegicus 81 AABR07033492.1 ENSRNOG00000059033 ENSRNOT00000090241 2 1 1 80 11 24042631 24042651 ATATGAGAGGTAACAGTTGGC 58 24034356 24042589 TTCTTGTACGTCCATCCAC 57 Novel Rattus norvegicus 81 AABR07051831.1 ENSRNOG00000015854 ENSRNOT00000021237 1 1 1 68 3 23762822 23762841 GCAAGGTTTACTGAAGTGTC 57 23769032 23769050 TGGGACAGAATTTGGAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051831.1 ENSRNOG00000015854 ENSRNOT00000021237 3 1 1 69 3 23762822 23762841 GCAAGGTTTACTGAAGTGTC 57 23769033 23769051 ATGGGACAGAATTTGGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020703.1 ENSRNOG00000057145 ENSRNOT00000086960 2 1 1 81 13 36027753 36029650 GCGAGACACAGAGTTTAACC 59 36029694 36029712 CAGTGGTATGTCCACAGGG 60 Novel Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 1 1 1 60 3 25350864 25350884 TGTTTCATCAAGGTTCTGGTG 59 25335865 25350844 TTTCTCATCAGAACCATCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051882.2 ENSRNOG00000060195 ENSRNOT00000086466 2 1 1 89 3 25414326 25414493 CTCAGATGAACTTAACTGTGACAC 60 25414260 25414279 CTGAGGTTTACTGGGATGCA 60 Novel Rattus norvegicus 81 AABR07051952.1 ENSRNOG00000060472 ENSRNOT00000083047 2 1 1 86 3 30043793 30043814 CATTTGACCTGGAGGAATAGAG 58 30043861 30044408 GCAGTTTACAAGGCTCTGG 59 Novel Rattus norvegicus 81 AABR07003304.1 ENSRNOG00000053281 ENSRNOT00000085506 1 1 1 80 1 104424031 104425124 TGTGCTGATGAACAAGAGGA 59 104423970 104423989 CCTGAGCTTGAGGTAGACAC 60 Novel Rattus norvegicus 81 AABR07003304.1 ENSRNOG00000053281 ENSRNOT00000085506 2 1 1 81 1 104424031 104425124 TGTGCTGATGAACAAGAGGA 59 104423969 104423987 CCCTGAGCTTGAGGTAGAC 59 Novel Rattus norvegicus 81 AABR07065118.1 ENSRNOG00000057327 ENSRNOT00000091235 1 1 1 80 6 110719568 110720225 CAAAGCAGACAGGTTTCAC 57 110720266 110720287 GAACTCAGGATCTCTAGAAGAG 57 Novel Rattus norvegicus 81 AABR07003310.3 ENSRNOG00000056597 ENSRNOT00000091414 2 1 1 80 1 105045462 105046160 CTGGAGTCAGGAATGAAGG 57 105046204 105046222 AGAGGACGATGACTCTGTC 58 Novel Rattus norvegicus 81 AABR07065274.1 ENSRNOG00000060324 ENSRNOT00000081529 2 1 1 81 6 118508322 118518755 ATGAGAAAGTGGCTTCATTCTC 59 118518795 118518815 CATGTAGTGAGTACAAGCTCC 58 Novel Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 2 1 1 69 11 39618520 39648201 AGGCCAACATGAGTGAGAG 59 39648230 39648252 CCATTATCTCCTGATGTCTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003390.1 ENSRNOG00000056901 ENSRNOT00000082223 3 1 1 95 1 108549218 108554618 TCGGGTGGATTCATAATTGG 58 108549142 108549160 TGTTTGTGGGAATGGAACC 58 Novel Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 2 1 1 60 13 65747811 65750217 CTTCATGTTCAGAGCACCA 58 65750236 65750259 GATGTTTGTAGGTAGCTCTATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033854.1 ENSRNOG00000054956 ENSRNOT00000091956 1 1 1 135 11 40603456 40603477 CAGCTGATTCCAACTTATAGTG 57 40601998 40602016 CAGTCTTGATGACAGTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021355.2 ENSRNOG00000060838 ENSRNOT00000088350 2 1 1 80 13 67483717 67483737 GTACTCAGAATGGCAATCCTG 59 67483779 67516973 TTCTGAGATTCCTGCTCCA 58 Novel Rattus norvegicus 81 AABR07033867.1 ENSRNOG00000057495 ENSRNOT00000077704 2 1 1 90 11 41467576 41468485 CCAAGCTGAAGAATGAATTTCC 58 41468536 41468554 GCTCTATGCCGATAATGCT 58 Novel Rattus norvegicus 81 AABR07033921.1 ENSRNOG00000059392 ENSRNOT00000078626 1 1 1 101 11 44490006 44501277 AATCTCTTGAGACGTCCGT 59 44501342 44501360 TCAGAATGGCTACGGAGAG 59 Novel Rattus norvegicus 81 AABR07065298.1 ENSRNOG00000059025 ENSRNOT00000087577 2 1 1 60 6 120103241 120103260 CGGAACAGTAAACTGCTCAG 59 120085235 120085253 GTGAAGTTGTAGGCACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021411.2 ENSRNOG00000052913 ENSRNOT00000083498 3 1 1 85 13 70840677 70840696 CAACACTGAGACAAAGTGCT 59 70840741 70841177 TCTTCTTACCCTTGTTGAAAGC 59 Novel Rattus norvegicus 81 AABR07033980.1 ENSRNOG00000055992 ENSRNOT00000081169 3 1 1 80 11 46870208 46870226 TGATGCAGCGAGTATTCAG 58 46870268 46876413 TAAGATCTCCATCCTCATCCT 57 Novel Rattus norvegicus 81 AABR07052521.1 ENSRNOG00000052533 ENSRNOT00000088745 3 1 1 87 3 59272201 59272219 CTCCTTGTGAGGAGAGTGG 59 59268830 59272152 GGGTACTTGACCTGAATTGAG 59 Novel Rattus norvegicus 81 AABR07065348.1 ENSRNOG00000054396 ENSRNOT00000092058 2 1 1 80 6 123108507 123108527 TAACAGCAGTAACCATGACGT 60 123108563 123109598 CTTCATATGACATCTTGGAGATGAG 59 Novel Rattus norvegicus 81 AABR07003827.1 ENSRNOG00000055116 ENSRNOT00000083824 3 1 1 80 1 118709871 118709889 CCTTCTGTCATGGGAAGCA 60 118708062 118709830 CCAAATTTGTACAAAGCCAAGC 60 Novel Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 2 1 1 60 13 80457750 80460440 TTCAGATCCGATGGAGGAC 59 80457708 80457729 CCATAGAGATACTAGGAGTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 3 1 1 61 11 72450096 72450115 GAACCTCACGAATCTTGCTG 59 72450137 72450508 TGTAACTCTTCAGATTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052568.1 ENSRNOG00000051523 ENSRNOT00000091684 3 1 1 75 3 61967560 61967578 CTCACACTGAAGGCTTTGG 59 61967848 61967869 AGCACTGATATGTCAAATGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021714.1 ENSRNOG00000059942 ENSRNOT00000089304 1 1 1 95 13 87327811 87327829 TTATTCCCTCGGGACAGGA 60 87322978 87327758 CTAGTATCTTTACTGTTGGATGTGG 59 Novel Rattus norvegicus 81 AABR07052587.2 ENSRNOG00000053364 ENSRNOT00000087843 1 1 1 60 3 64180711 64180730 AAAGCATTCTTATTGGCCCT 58 64182334 64182354 AGAACCAAAGGAATTCCTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065429.1 ENSRNOG00000055861 ENSRNOT00000088940 1 1 1 84 6 128344593 128345293 CAAGTTGATGGTACTTGGCA 59 128345339 128345358 CAGTACAAGGAGGAATGGGA 59 Novel Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 2 1 1 60 13 90221496 90238739 CAACAGCAAGGTAACTGGA 58 90221454 90221472 ACATTGGGAGCTCATTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 3 1 1 60 13 90221497 90238740 GCAACAGCAAGGTAACTGG 60 90221455 90221473 CATTGGGAGCTCATTCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021799.1 ENSRNOG00000061447 ENSRNOT00000084883 1 1 1 94 13 91527517 91528901 CAATCAGAGTAACCACCACAG 59 91527273 91527297 GAAGACTTCCAACTTCTATTTCTCC 60 Novel Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 1 1 1 60 3 71108012 71109786 GAAGCTAGGTTACTGAAGACCA 60 71107973 71107992 AGTTTGGTGCTGAAGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072881.1 ENSRNOG00000060062 ENSRNOT00000087872 2 1 1 60 3 71935331 71935350 CGAATTCACTCTGCTGATCG 59 71933702 71933724 CACGCTATATCTGGTTACTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 3 2 2 84 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228240 74228468 CTTTAGCTTGTTGCACTCG 57 Novel Rattus norvegicus 81 AABR07052788.1 ENSRNOG00000058334 ENSRNOT00000078139 2 1 1 80 3 75239716 75239739 CTTAGTGGATAATGCCATACATCG 60 75239167 75239683 CTCTATATCCTCAATACAAGCAGAG 59 Novel Rattus norvegicus 81 AABR07035008.3 ENSRNOG00000058876 ENSRNOT00000089215 1 1 1 82 12 3208176 3245888 GTGATAAGAAAGCATGCATGAG 58 3245930 3245949 TTCTTAAGTCCCGTGAACTG 58 Novel Rattus norvegicus 81 AABR07065600.1 ENSRNOG00000059736 ENSRNOT00000082819 3 1 1 82 6 136898852 136898870 TGGGAATCTTGGCTGACTG 60 136898914 136899495 AGCGAATAATGATCTTTGCCC 59 Novel Rattus norvegicus 81 AABR07065766.1 ENSRNOG00000054462 ENSRNOT00000080005 2 1 1 103 6 140400188 140400290 TCCAATCAGTGTCCTGTCC 59 140400103 140400122 ATGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07065772.3 ENSRNOG00000051722 ENSRNOT00000077867 1 1 1 105 6 140608589 140608691 ATTTCCAAGCTGTGTCCTG 58 140608502 140608520 TGAGAAGCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07004305.1 ENSRNOG00000057892 ENSRNOT00000085298 2 1 1 80 1 136298294 136298312 TGTTCTCAGAGCATCTGCT 59 136295289 136298252 AGAAACAGTCCTTACAGATGC 58 Novel Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 1 1 1 65 1 141675228 141679356 AAGAAGAAAGGCGGAAGGT 59 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053293.1 ENSRNOG00000053538 ENSRNOT00000082187 2 1 1 60 3 97221348 97221367 TGATAGCCCAACTCAAAGTG 58 97221385 97223571 TGTCTCTGCTATAGACTGTTTCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07004428.1 ENSRNOG00000061889 ENSRNOT00000089908 1 1 1 60 1 142500827 142500847 GAACTAAACACCAGTCCTCTG 58 142511527 142511545 CTCCAGAGCTAGTGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024669.1 ENSRNOG00000051588 ENSRNOT00000090991 2 1 1 84 16 11402197 11404155 AAGATAAACAGGAAGGCAGTC 58 11404201 11404219 TAACTCCTTCCTTCAGGCA 58 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 3 1 1 66 1 147423415 147424450 TTTGCCTTTCTCAGCAGGA 60 147423367 147423385 TAGAAACAACTGCATGCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004572.1 ENSRNOG00000054930 ENSRNOT00000084334 1 1 1 83 1 147696948 147696966 GATTGATCACGGAGAGGAG 57 147697013 147697991 ATCTGTTCATCACCAAGGC 58 Novel Rattus norvegicus 81 AABR07024799.2 ENSRNOG00000059758 ENSRNOT00000089776 1 1 1 80 16 17289980 17290002 TGTCTCTACTCCTCTATTCTACG 58 17290041 17310337 AGGAAGATCTTGTCAGGCTC 59 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000092035 2 1 2 164 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778561 21778700 AAGGGATTGGTGAAGGCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07024814.2 ENSRNOG00000058160 ENSRNOT00000086688 3 1 1 66 16 17941335 17941355 GAGAAGCAGAACATTGAATGC 58 17961899 17961917 GAGGACTTCAGGAAAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.1 ENSRNOG00000056032 ENSRNOT00000089026 1 1 1 98 12 22375084 22375102 AAGGATCCTTTCAGTGCCA 59 22375162 22375275 ACTTCATAGTGCTGGAGACAC 60 Novel Rattus norvegicus 81 AABR07005535.1 ENSRNOG00000051825 ENSRNOT00000088158 1 1 1 80 1 185354986 185356204 GTGCTCAGTTGGACAAGAG 59 185354924 185354944 GATGAGGTAGAATTGTTCGGG 59 Novel Rattus norvegicus 81 AABR07005535.1 ENSRNOG00000051825 ENSRNOT00000088158 2 1 1 81 1 185354986 185356204 GTGCTCAGTTGGACAAGAG 59 185354923 185354943 GGATGAGGTAGAATTGTTCGG 59 Novel Rattus norvegicus 81 AABR07035888.1 ENSRNOG00000059259 ENSRNOT00000088837 2 1 1 82 12 26703996 26704015 CCTGAATGATACCTGCACTG 59 26704060 26709581 TTTCTCAGGGAAGGACCTC 58 Novel Rattus norvegicus 81 AABR07067183.1 ENSRNOG00000057182 ENSRNOT00000090092 1 1 1 88 9 33915121 33915142 AAGATCATTCTGTGAGCATCAG 59 33913722 33915078 GTTAGTTGCTCCTCTTAATATCCTC 59 Novel Rattus norvegicus 81 AABR07025387.1 ENSRNOG00000052518 ENSRNOT00000086642 3 1 1 86 16 36374735 36375202 ATCTCAAACCAGCAACCCT 59 36375252 36375270 GATATTCGCCACACCACAG 59 Novel Rattus norvegicus 81 AABR07005572.1 ENSRNOG00000051432 ENSRNOT00000084979 3 1 1 96 1 188161721 188166053 CTGGCTTGGGATAAATTACAGAG 59 188161647 188161665 GATTCACAGCTGCTCTGGA 60 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859 2 1 3 80 3 142297335 142319135 GATACATTTCAAGGGTGAACCA 59 142297276 142297294 GACTGAGACACTGGGTACC 59 Novel Rattus norvegicus 81 AABR07036024.2 ENSRNOG00000060352 ENSRNOT00000091954 1 1 1 68 12 30948086 30948105 TCCATGTCAAGGACATTCTC 57 30947666 30947684 AAGAGAAGCTTTGCTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054315.1 ENSRNOG00000061670 ENSRNOT00000090434 2 1 1 81 3 147501125 147501715 CCAGAACACAGAAAGTGGG 58 147501757 147501778 TTGTACAATGCCCTTTATGGTG 59 Novel Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 2 1 1 62 12 33687323 33687344 CCATCCTTTCTAAATTCAAGGC 58 33686612 33687300 TGATCAATCACTGGACACC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054341.1 ENSRNOG00000052433 ENSRNOT00000087730 1 1 1 92 3 148973445 148973463 CTGAAATTCCAGCTGCCTG 59 148973519 148974068 GATCCCAGTCTCGTTGGAG 60 Novel Rattus norvegicus 81 AABR07036302.2 ENSRNOG00000060862 ENSRNOT00000089655 2 1 1 81 12 37055821 37055840 ACAGAGTGGCTTCTAGACAG 59 37055883 37056832 CATCTATCCCTGTCCATCCT 58 Novel Rattus norvegicus 81 AC135822.3 ENSRNOG00000061375 ENSRNOT00000088225 3 1 1 66 3 150414910 150414928 CAGAATATGGAGCCCAGGG 60 150415795 150415813 GAGTTGAGGAGTAGCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005808.1 ENSRNOG00000052932 ENSRNOT00000081320 3 1 1 86 1 200782124 200782142 GACAAGACTTTCAAGCTGC 57 200767589 200782075 TCAGATATTCGACCTCTCCA 57 Novel Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 2 1 1 66 9 59448126 59450873 CCTGTTCATAGTCACAGGGT 59 59450901 59450920 GTATCTTCCATAGCTTGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036411.1 ENSRNOG00000057987 ENSRNOT00000088959 2 1 1 83 12 42388937 42388955 GTTTGACCTCAGAGACCAC 58 42387618 42387636 TTTCCAATGCTCTGCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC128986.1 ENSRNOG00000061174 ENSRNOT00000079892 1 1 1 60 3 156726027 156726045 TGTTTCTGTTCCACAGGAG 57 156723131 156723149 CTAGAAGGCACAGTAGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026125.1 ENSRNOG00000053207 ENSRNOT00000082833 2 1 1 90 16 64984118 64984136 GGACTTGGATAGGACTGGC 60 64982386 64984064 CAAAGAAGCCACCTTTGCA 59 Novel Rattus norvegicus 81 AABR07067767.1 ENSRNOG00000056520 ENSRNOT00000080327 2 1 1 87 9 62574197 62574215 CAGGTGACTTGTCCTGGAG 60 62574266 62586002 CCTCTGTCAAGCATCTGGT 59 Novel Rattus norvegicus 81 AABR07026151.1 ENSRNOG00000061567 ENSRNOT00000082609 2 1 1 80 16 65931008 65932058 AACAACACATAACAGAAGCCTC 59 65932098 65932117 TTTCCTTCTCCTCTTGGTCC 59 Novel Rattus norvegicus 81 AABR07005965.1 ENSRNOG00000055312 ENSRNOT00000086951 2 1 1 80 1 209511019 209511040 TACAGAGTCTATTTCTGGGAGC 59 209508698 209510979 CTGAGGATCAGTTAAGCCGT 60 Novel Rattus norvegicus 81 AABR07005977.2 ENSRNOG00000052927 ENSRNOT00000090758 1 1 1 80 1 210505835 210505855 GCTGTTGTCTCTGAAGTTCAC 60 210504801 210505794 CTTCAGCACACCAAATTCCA 59 Novel Rattus norvegicus 81 AABR07005977.2 ENSRNOG00000052927 ENSRNOT00000090758 2 1 1 80 1 210505833 210505854 CTGTTGTCTCTGAAGTTCACAC 60 210504800 210505793 TCTTCAGCACACCAAATTCC 59 Novel Rattus norvegicus 81 AABR07054583.1 ENSRNOG00000057311 ENSRNOT00000085951 1 1 1 97 3 162251486 162254144 TTCACTCACTTCAGAGGGA 58 162254204 162254223 TTATTTGGTCCCACGATGAG 58 Novel Rattus norvegicus 81 AABR07026271.2 ENSRNOG00000061651 ENSRNOT00000081550 1 1 1 80 16 70012021 70013570 CCGAATGAGTCAGTACAACCT 60 70011961 70011985 GGGTTGAATAGTATTGTCATCATCC 60 Novel Rattus norvegicus 81 AABR07026271.2 ENSRNOG00000061651 ENSRNOT00000081550 2 1 1 80 16 70013600 70013620 TATGGGAGCAACAGTACTACC 59 70012011 70013562 GAACCTTAACAGGTTGTACTGAC 59 Novel Rattus norvegicus 81 AABR07054609.1 ENSRNOG00000056512 ENSRNOT00000090601 3 1 1 82 3 163243216 163243236 AAGAAATGGGTCAGCATTCTG 59 163241705 163243172 GTGCCATGAATGAGCATCC 59 Novel Rattus norvegicus 81 AABR07006038.2 ENSRNOG00000061253 ENSRNOT00000088263 3 1 1 90 1 214974848 215004921 CTATCAAAGGAAACGCAAGGA 59 214974778 214974796 CAACATGCTCTGGAGACAG 58 Novel Rattus norvegicus 81 AC099449.1 ENSRNOG00000056268 ENSRNOT00000079820 2 1 1 80 1 215969679 215972995 TCACTTCCTCAGGACTACTG 58 215969618 215969636 TTAAGATCGCAGGAAACCC 58 Novel Rattus norvegicus 81 AC099449.1 ENSRNOG00000056268 ENSRNOT00000079820 3 1 1 80 1 215969679 215972995 TCACTTCCTCAGGACTACTG 58 215969618 215969637 TTAAGATCGCAGGAAACCCT 59 Novel Rattus norvegicus 81 AABR07054662.1 ENSRNOG00000057226 ENSRNOT00000083036 1 1 1 82 3 166270481 166278485 CTGCTGAATTAAGCAACTCTG 58 166270419 166270437 TTGTCAGGATGAATGCAGG 58 Novel Rattus norvegicus 81 AABR07054662.2 ENSRNOG00000058272 ENSRNOT00000090077 2 1 1 89 3 166293871 166295902 ACCAACAGATGTGAGGAGC 60 166293800 166293818 CCAATTCCACGATGTCACC 59 Novel Rattus norvegicus 81 AABR07036627.1 ENSRNOG00000059217 ENSRNOT00000078550 3 1 1 80 12 50649859 50651756 CAAGGATACAGGTACTTGGTG 58 50651797 50651816 ATTCTCAGTGCTATCTCCGT 58 Novel Rattus norvegicus 81 AABR07067885.1 ENSRNOG00000052796 ENSRNOT00000090721 2 1 1 80 9 70901795 70942675 ACAAGCATTTGGAGACTCTG 58 70901734 70901752 GGTACGGTGCAGAATATCG 58 Novel Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933,ENSRNOT00000087244 3 2 2 60 9 71398079 71398099 GTTTCTCCATGTTTGACAGCT 59 71388837 71388856 TATCACATGGTTCTGGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC098981.1 ENSRNOG00000053867 ENSRNOT00000090640 2 1 1 61 1 218269347 218273162 AAAGCTCTATGGAGGTGCA 59 218269304 218269322 CATCTCAGGGCAGGAAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07006097.1 ENSRNOG00000057099 ENSRNOT00000086155 2 1 1 86 1 219755960 219758194 GATTTCGAGTTCAAGGTCCTC 59 219755894 219755912 ATGGCTTAGCAGGACTGAC 60 Novel Rattus norvegicus 81 AABR07022202.2 ENSRNOG00000055953 ENSRNOT00000078199 1 1 1 110 13 112800565 112800584 AAATTCCCTCATCTGGAGAC 57 112789664 112800495 GTCCAGATGTACATGAATATGC 57 Novel Rattus norvegicus 81 AABR07054948.1 ENSRNOG00000060715 ENSRNOT00000089263 2 1 1 113 3 174553390 174553408 GAAACAGCCTCTGCATGAG 59 174553485 174554930 GTTGTCATTCTCATGCCCA 58 Novel Rattus norvegicus 81 AABR07068107.1 ENSRNOG00000056443 ENSRNOT00000078713 1 1 1 80 9 83786681 83813221 AAGTCCATTCCTGGATCCT 58 83786619 83786637 AGGGTCATTGGTTCAAACG 58 Novel Rattus norvegicus 81 AABR07026503.1 ENSRNOG00000051884 ENSRNOT00000087757 2 1 1 80 16 79532525 79539697 ATCCTGAAGATTCTAAACGCAC 59 79532466 79532484 CAGAGAATTGAGAGCAGGC 58 Novel Rattus norvegicus 81 AABR07039203.1 ENSRNOG00000053721 ENSRNOT00000092164 1 1 1 80 X 71595921 71596404 AGCAGTGAAGAATACATGCCT 60 71600104 71600122 GGGATTGTCAGAGTCCGAG 60 Novel Rattus norvegicus 81 AABR07068285.1 ENSRNOG00000060928 ENSRNOT00000079425 2 1 1 84 9 95795108 95795129 CATCTTGCTTGATGAAGCTAGG 60 95794702 95795063 CCTCCTTGACGTAAGCCTC 60 Novel Rattus norvegicus 81 AABR07026596.3 ENSRNOG00000060353 ENSRNOT00000082350 2 1 1 84 16 85391120 85392617 CAAAGCCAAGTGTTTCAGG 57 85391054 85391072 AAAGCAGCAAGTACCTCAG 58 Novel Rattus norvegicus 81 AABR07026612.1 ENSRNOG00000056384 ENSRNOT00000084414 2 1 1 77 16 86465684 86465702 GTCACAGTATCACCCGGAG 60 86470323 86470341 CCTCTCAGTGACAGGTTCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 2 1 1 66 X 96466495 96469361 AGGTAGTTCATCCATTACAGC 58 96466449 96466467 ATGGTTGCTTCATGGACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 2 1 1 60 7 23198306 23251327 CAAGGCACGTATTAAATTTCCG 59 23198267 23198288 CAAGAATCTGAAGGTAGGTGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006736.1 ENSRNOG00000061760 ENSRNOT00000083581 3 1 1 81 1 250660515 250662366 CAGTAATTACAGAGCTTCCAACC 60 250660456 250660474 GCTTGTGTATCCTCTGCCT 60 Novel Rattus norvegicus 81 AABR07026936.4 ENSRNOG00000055275 ENSRNOT00000090529 1 1 1 62 17 5694021 5694039 GAAGGAACTCCTGGTCTGG 59 5693041 5693059 GTGTTCAGCAAGACTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC113773.1 ENSRNOG00000057564 ENSRNOT00000081284 2 1 1 89 1 255127838 255135102 TGGAAACCATTCTAGCCAC 57 255135155 255135173 GCAGGAAGTACAATCCGAG 58 Novel Rattus norvegicus 81 AC121740.1 ENSRNOG00000061638 ENSRNOT00000087745 2 1 1 122 1 255418241 255418934 TCTACACAGCCAAGACTGC 60 255419020 255419038 TCAGAAAGCGAATGGACGT 60 Novel Rattus norvegicus 81 AC139608.2 ENSRNOG00000054905 ENSRNOT00000082237 1 1 1 60 17 9422116 9427087 CATGTCTTCAGATGCGCAG 59 9422074 9422093 CAAGTCAGGAATAAGCTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042654.1 ENSRNOG00000057797 ENSRNOT00000085554 3 1 1 99 19 1714569 1714587 CATGGCTGGTATTCATCCA 57 1714647 1715265 CAATTCTGCTTATGGAAGTTGG 58 Novel Rattus norvegicus 81 AABR07027010.2 ENSRNOG00000061562 ENSRNOT00000083981 1 1 1 80 17 10652156 10652175 AGATTCACGGTAACAGAACG 58 10652213 10652920 CTCCAGTACTTGTCTCATTATCTG 59 Novel Rattus norvegicus 81 AABR07027030.1 ENSRNOG00000055200 ENSRNOT00000079154 1 1 1 80 17 11661162 11670307 GTAAACAAGCAAGCACCAC 58 11661100 11661119 GCTCATCTTTGTACTAGCCT 57 Novel Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 2 1 1 60 19 5851824 5851842 ATCTCAGGAGGAGTCTCCT 58 5851866 5852501 TTGTCTGTACCAGGTACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027116.1 ENSRNOG00000059028 ENSRNOT00000091406 1 1 1 82 17 14791667 14791685 CTAGTCCCTCACAGACTGC 59 14791731 14792267 CTATGCCCTGCTCTTCCTC 60 Novel Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 2 2 2 81 8 4890736 4896592 TAGGTATTTGGCTGGTCTGC 60 4890674 4890692 TCTCCATAGGCTAGCAGCT 60 Novel Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 3 1 1 61 17 18866611 18866910 AGATTCTGCCCTGTCAGAG 59 18866934 18866953 AGACTGAATGAGACTTTGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042825.1 ENSRNOG00000061468 ENSRNOT00000078065 1 1 1 122 19 11064657 11068176 TCTCAAGATAAAGGGCAGGG 59 11068261 11068279 CTGGATCTGGACATCCCTG 59 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081379 3 1 2 82 19 11671478 11786395 TTTGATGGACCGAAGTGTG 58 11786440 11786459 CATCATGACTGACAGCTCTG 59 Novel Rattus norvegicus 81 AABR07042903.2 ENSRNOG00000057776 ENSRNOT00000082870 2 1 1 91 19 14433101 14440453 TCATGAGATCTGAGTCCACAG 59 14440506 14440524 TCGGAATTGAACGCCTAGG 60 Novel Rattus norvegicus 81 AABR07056769.1 ENSRNOG00000055033 ENSRNOT00000077565 2 1 1 82 7 40553720 40553744 CCTTATGAGTTGTGGAATCATTAGG 60 40553784 40559367 CTCCGTGCTCTGTATCTGG 60 Novel Rattus norvegicus 81 AC096311.1 ENSRNOG00000052225 ENSRNOT00000088181 1 1 1 110 1 267466119 267466139 CTCATTTCAACAGGAATCCCT 58 267464196 267466047 TATGAGGGTGACCTTGGTG 59 Novel Rattus norvegicus 81 AABR07042999.1 ENSRNOG00000058341 ENSRNOT00000084464 3 1 1 118 19 15844908 15844927 TATCCTTCAGCTTCCTGCAG 60 15845465 15845483 ATGTGAATTCCTCCCGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.2 ENSRNOG00000053722 ENSRNOT00000085478 2 1 1 80 8 12818421 12821370 TAGGTGATATGGTTAGAGGAATCTG 60 12818365 12818386 GATAGCAGGAATCTAACAGCTC 59 Novel Rattus norvegicus 81 AABR07043031.1 ENSRNOG00000052465 ENSRNOT00000086744 3 1 1 81 19 17986174 17986192 GTCCAGCTCAGGATAATGC 58 17986237 17987816 TGTCTCCTTGAACCCATCC 59 Novel Rattus norvegicus 81 AABR07057079.1 ENSRNOG00000053059 ENSRNOT00000085889 3 1 1 133 7 53759563 53759941 TTTCGATCTTGGGCTTTGC 59 53760037 53760056 GTTAACAAGGGTTCCACAGC 60 Novel Rattus norvegicus 81 AABR07057146.1 ENSRNOG00000052524 ENSRNOT00000086704 1 1 1 106 7 57736568 57737951 TGTATTCCTGTGAGAGTCCA 58 57736481 57736499 TCTTCTCTTCCCATTGGCT 58 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000078748 1 2 3 87 8 23534927 23560261 TCTACTCCGTCTCAGGGAC 60 23560312 23560330 GTCCTCTGAAGATGGTGCT 59 Novel Rattus norvegicus 81 AABR07027390.3 ENSRNOG00000057157 ENSRNOT00000079814 1 1 1 102 17 27876747 27876765 CTTGTGGGAAAGCACAGAG 59 27869896 27869914 GTAAGGCAGGTTGTATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043133.1 ENSRNOG00000055707 ENSRNOT00000091454 1 1 1 80 19 23262901 23262920 ATGTCTGTCTTCGTCTGTGG 60 23258355 23262860 GGCCAATTCATGAAGTCTGAG 59 Novel Rattus norvegicus 81 AABR07057325.1 ENSRNOG00000059391 ENSRNOT00000086676 3 1 1 81 7 65729589 65731371 TTCCGACGGTCATTTACAG 58 65729526 65729544 AAAGACAAGCAGGATCTCG 58 Novel Rattus norvegicus 81 AABR07027571.1 ENSRNOG00000052547 ENSRNOT00000083376 3 1 1 83 17 37358974 37360544 TAGAGGGAGAAGGTGTCGT 59 37360590 37360609 CCCAAGGCATTTCAGTAGGA 60 Novel Rattus norvegicus 81 AABR07057421.2 ENSRNOG00000054306 ENSRNOT00000085702 3 1 1 60 7 70271940 70271959 GAAGCCAAATTGGGTTCGAG 60 70270165 70270186 ACAGTTCATCTCTGGCTATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057436.1 ENSRNOG00000055483 ENSRNOT00000086346 2 1 1 84 7 71103443 71104220 GCATCATGAAAGTCCAGGG 59 71104267 71104286 ATCAACCCTGACTGTATGGG 59 Novel Rattus norvegicus 81 AABR07043728.1 ENSRNOG00000054835 ENSRNOT00000078112 3 1 1 80 19 36491560 36493424 CAGATCCATGCAGAACAGAG 59 36491499 36491518 CATGGTGGCCTTTAAGTAGG 58 Novel Rattus norvegicus 81 AABR07028998.1 ENSRNOG00000057152 ENSRNOT00000086268 1 1 1 80 10 1771585 1771605 TGTCTCCTAGAATCCATGTCC 59 1771646 1772631 ACCATCATCCCTGTAATCCA 58 Novel Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000090255 1 1 2 80 19 39502568 39536188 CTGTACTCGCGAGAATCTG 58 39536231 39536250 TGATGCTGCAGATGTTTCTC 59 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 3 1 1 101 10 11306648 11306667 CTCTCCCTATCTGTGGTGAG 59 11306731 11308042 CTTCCATAGCAGGAGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057907.1 ENSRNOG00000053194 ENSRNOT00000079537 2 1 1 80 7 93611933 93617400 ATTCGTACAGATACGGCCA 59 93611871 93611891 CTGTTCTTTCCAACCTTCACC 60 Novel Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 3 1 1 63 10 15170445 15175419 GGACTCACATCATTCCCAG 58 15175445 15175464 GAGTGTCTTCAGATGAGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.2 ENSRNOG00000054610 ENSRNOT00000086828 3 1 1 98 10 16183200 16183218 ATGTGAACAAACCCACCAG 58 16182897 16182915 GAAGTTTCCAGCCAACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 2 1 1 61 10 16235992 16236011 GACAAGAGTCCTGTACTTGG 58 16236035 16236416 TTGTGGAGTGAAGGATGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029467.1 ENSRNOG00000053532 ENSRNOT00000077842 3 1 1 88 10 29612697 29612715 TTTGGTTGCTTGTCAGCAG 59 29612767 29623852 GATCTCTGACAGCTCCTGG 59 Novel Rattus norvegicus 81 AABR07029563.1 ENSRNOG00000052371 ENSRNOT00000090220 3 1 1 80 10 34704577 34709703 ATGACGACTTGGACACTGG 60 34709745 34709765 AAGATTCGATTGTGGTAGCAC 59 Novel Rattus norvegicus 81 AC126640.1 ENSRNOG00000054866 ENSRNOT00000085075 2 1 1 114 10 38535651 38535670 TGCTCTTGGCTTTATTTGGG 59 38534987 38535008 CAGAAGAGACTCATGAGTAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07007798.1 ENSRNOG00000059761 ENSRNOT00000090072 3 1 1 82 2 28839394 28839415 GAGGAATGACAGTGAACAACTC 59 28834674 28839354 TTGCAATGAAGTCCTTCAAGAC 60 Novel Rattus norvegicus 81 AABR07058483.1 ENSRNOG00000052754 ENSRNOT00000084937 1 1 1 112 7 119074818 119074836 CAACCTACTCTGCCACCTC 60 119076761 119076779 TGATGCATAGTGTGACCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.3 ENSRNOG00000056623 ENSRNOT00000090356 1 1 1 80 10 41830921 41833263 GACTCAGAGAAGCAGTTGG 58 41830859 41830877 AAGTCGTTTCATCTTCGGG 58 Novel Rattus norvegicus 81 AABR07007802.1 ENSRNOG00000055452 ENSRNOT00000089101 3 1 1 99 2 28881949 28881967 AAACGCTCATGTACATGGG 58 28879759 28881891 CCTTCATATCTGAAGGAAGATGAC 59 Novel Rattus norvegicus 81 AABR07072559.2 ENSRNOG00000056375 ENSRNOT00000087248 3 1 1 80 17 44800476 44801445 ACCAATGACTCAATCCCAG 57 44801487 44801507 AGTTCCAACTACTTGTCTGTC 58 Novel Rattus norvegicus 81 AABR07058554.1 ENSRNOG00000054112 ENSRNOT00000090656 1 1 1 61 7 124624946 124624966 TGGGATCATCTGATATCTGGG 59 124626608 124626626 GATCTCTGAGCCTCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027919.1 ENSRNOG00000057076 ENSRNOT00000091951 2 1 1 80 17 49053364 49053385 GTAAAGAGGAGTATCCTCCCAC 60 49035696 49053329 GATAACTTTCTTCTCAGCTCTTCTG 60 Novel Rattus norvegicus 81 AABR07028055.1 ENSRNOG00000059796 ENSRNOT00000090292 3 1 1 81 17 54937088 54940855 CTGAAGTGAAGGTCACAGGA 59 54940899 54940917 GTTCACAGTGGCAAAGACG 60 Novel Rattus norvegicus 81 AABR07058985.1 ENSRNOG00000053300 ENSRNOT00000088476 3 1 1 83 4 84364 86122 CCAGGCTTTGTCAATGACTC 59 86168 86186 CTTCTGCTGCATCTGAAGC 59 Novel Rattus norvegicus 81 AABR07070532.1 ENSRNOG00000054547 ENSRNOT00000089415 1 1 1 80 8 74271546 74271567 TTTCCATTGATCATGTCACAGG 59 74271605 74272238 ATGTTGTGGTAACTTCCATAGC 59 Novel Rattus norvegicus 81 AC132760.2 ENSRNOG00000061881 ENSRNOT00000088800 2 1 1 60 20 7693420 7693439 GCAGAAAGAAGGAAGAGGAG 58 7691677 7691695 CTCATTCTTCCTCCAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044492.1 ENSRNOG00000053996 ENSRNOT00000083619 2 1 1 90 20 8137873 8137891 AGTGAAGGGTTTGAATGCT 57 8132478 8137819 TGACTCCTTTGTAACCGTC 57 Novel Rattus norvegicus 81 AABR07059153.1 ENSRNOG00000059246 ENSRNOT00000081010 2 1 1 72 4 5424327 5424345 TCCTAGACTCCCATGTGCT 60 5417549 5417568 GATCCTTCATGTTGAGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 3 1 1 68 4 5628139 5628158 CACTCATGGCCATAATGCTG 60 5627199 5628110 AACTTAATCCTTCCTCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070704.1 ENSRNOG00000058223 ENSRNOT00000088217 3 1 1 94 8 80923439 80923457 AGAACTCAAGCATCAGCTG 58 80923515 80924895 ACTCTGTTCCTTTCATGGC 58 Novel Rattus norvegicus 81 AABR07072979.1 ENSRNOG00000056814 ENSRNOT00000077829 2 1 1 80 4 31989078 32002531 GTTACTTCGAGTTTCTTCGC 57 32002574 32002592 TGTCGTTGCTAAGGAAGAC 58 Novel Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000089163 2 1 2 83 2 43406759 43406778 ATATGGAGGGAAAGATGGCT 58 43406821 43414090 GCTGTTGTGTTCCTTATTACAG 58 Novel Rattus norvegicus 81 AABR07071045.1 ENSRNOG00000058170 ENSRNOT00000087685 2 1 1 81 8 98155570 98158084 TAGTTCAAAGGCTGGACAG 57 98158129 98158147 GAAGATGCTTGATGTGCAC 57 Novel Rattus norvegicus 81 AABR07071045.1 ENSRNOG00000058170 ENSRNOT00000087685 3 1 1 82 8 98155568 98158082 GCTAGTTCAAAGGCTGGAC 59 98158128 98158146 AAGATGCTTGATGTGCACC 59 Novel Rattus norvegicus 81 AABR07059875.1 ENSRNOG00000053063 ENSRNOT00000091383 3 1 1 66 4 39632655 39632673 CACCGGATACTCTGGAGTC 59 39631082 39631100 AGTACGCGTTTCTCAACGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 3 1 1 113 20 23359619 23359637 GTCTGTGTCCAGACTCCAC 60 23351322 23359542 TTTCCTGGACAGGTGTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071228.1 ENSRNOG00000057243 ENSRNOT00000088816 1 1 1 80 8 105666795 105667065 CAGCTGATAGCAAATCATGAGG 60 105666736 105666757 GCATTTGTCATCAAAGTAGCTG 59 Novel Rattus norvegicus 81 AABR07071299.1 ENSRNOG00000058871 ENSRNOT00000088614 3 1 1 88 8 108470826 108470844 GGTGTGATGGGAAGGAGTC 60 108466719 108466737 TGGTGTTCACCAAATCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000082061 3 1 2 67 8 114039217 114039235 CAGAGTGCAGTTTCGATGG 59 114038312 114038333 AGGGAGGAAGAAATGATTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071543.1 ENSRNOG00000060423 ENSRNOT00000080802 3 1 1 80 8 121433466 121434760 GAAATGAGAGCATCAAGTGGT 59 121434799 121434820 GTCATTAGGAGTTCATGGTGTG 59 Novel Rattus norvegicus 81 AABR07071551.1 ENSRNOG00000056838 ENSRNOT00000085283 2 1 1 80 8 121662940 121662959 AACACATTCCAGGGTTTGAC 59 121659181 121662897 CTTCTGTTCTTCCCTGCCA 60 Novel Rattus norvegicus 81 AABR07071567.2 ENSRNOG00000055260 ENSRNOT00000085415 2 1 1 110 8 122324378 122324396 TGAGAGGGCTTTCAGAAGG 59 122324468 122329458 ACAGAATACCAGACGAAGGAG 59 Novel Rattus norvegicus 81 AABR07060539.1 ENSRNOG00000054527 ENSRNOT00000077611 1 1 1 61 4 79184164 79185860 TGCTCAGATTGTTAAGGGAG 57 79184122 79184140 GCTTCTTTCAGGTTCCAGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07060539.1 ENSRNOG00000054527 ENSRNOT00000077611 3 1 1 62 4 79184164 79185860 TGCTCAGATTGTTAAGGGAG 57 79184121 79184139 TGCTTCTTTCAGGTTCCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043928.2 ENSRNOG00000058892 ENSRNOT00000079103 3 1 1 82 19 48211990 48212008 CTCAAGGAGGGACTTCTCC 59 48211736 48211948 CCTTCATAGTCATTCAACATCCC 59 Novel Rattus norvegicus 81 AABR07008844.1 ENSRNOG00000061700 ENSRNOT00000079902 1 1 1 130 2 76366175 76366196 CAGAGAATCTGAACTACTAGCA 57 76364932 76366084 AGATCCTTGGCACTTTCTG 57 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 2 1 2 115 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131375126 131375144 CTCATGGTGCAGGAGTCTC 60 Novel Rattus norvegicus 81 AABR07071662.1 ENSRNOG00000059072 ENSRNOT00000081801 1 1 1 80 8 126542738 126567989 TTTGTTCGCCTAGAACACC 58 126568030 126568051 GTTTGCCTATAATTTCAGCTCC 58 Novel Rattus norvegicus 81 AABR07044009.1 ENSRNOG00000053641 ENSRNOT00000085494 2 1 1 69 19 52840345 52840363 CATCTGCTGAACAATTGGC 58 52839659 52839677 CATCACTCCGAGACTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008948.1 ENSRNOG00000055866 ENSRNOT00000085119 1 1 1 103 2 80861339 80861357 AACCAACCTCAGAACCAGG 60 80853597 80853615 AAAGGTGCTGGTGTAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008948.1 ENSRNOG00000055866 ENSRNOT00000085119 3 1 1 104 2 80861340 80861358 CAACCAACCTCAGAACCAG 58 80853597 80853615 AAAGGTGCTGGTGTAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058729.1 ENSRNOG00000051866 ENSRNOT00000085329 1 1 1 108 7 135390392 135390411 GGATGGATACTGATGACCTG 57 135389689 135390321 TATTGTAGCAGCTGTGGTG 58 Novel Rattus norvegicus 81 AABR07044081.2 ENSRNOG00000061604 ENSRNOT00000081420 1 1 1 80 19 56544897 56546222 GAGACTGAGAGCTCTGTCC 59 56546266 56546284 CTCTGAGGACATCAAGGCT 59 Novel Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000087127 2 1 2 81 7 137515606 137516069 ATTATTGCCAGGCAGAGGA 59 137515543 137515561 CTTTCTGGTGTCTCTGGCT 59 Novel Rattus norvegicus 81 AABR07044171.2 ENSRNOG00000055617 ENSRNOT00000086665 1 1 1 81 19 61316533 61316555 CAGAGAATCAACTACAGAAGAGC 59 61313344 61316492 TTGGATCATGCCACCTGAG 60 Novel Rattus norvegicus 81 AC103129.5 ENSRNOG00000058860 ENSRNOT00000084402 1 1 1 80 7 139993193 139993211 CTCCATCTTCAACTGCAGG 58 139993255 139997042 ATGGATGTGCTTCTTTGCT 58 Novel Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 3 1 1 60 7 143620301 143620319 GCAGCTGCTCATCTATGTC 59 143620342 143625149 AAGTACCTGCAGATTTGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009357.2 ENSRNOG00000060543 ENSRNOT00000086398 3 1 1 81 2 94302509 94303487 TAACTTGTCAGTCCTAGGGA 57 94303531 94303549 CAGATATTCCCGCTTCCTG 58 Novel Rattus norvegicus 81 AABR07009426.1 ENSRNOG00000052217 ENSRNOT00000078602 2 1 1 86 2 97249673 97263543 GGAAGTTCAGGTGTTCACAC 59 97249606 97249624 TTATATCCGCCCTTCTGCA 59 Novel Rattus norvegicus 81 AABR07007088.2 ENSRNOG00000058931 ENSRNOT00000081935 3 1 1 81 1 280299191 280299209 ACAGGACAATGCTGTTTGC 59 280298003 280299149 TCCTTTGGTTTGAATTCTCTGG 59 Novel Rattus norvegicus 81 AABR07007146.1 ENSRNOG00000055064 ENSRNOT00000088930 2 1 1 96 1 282723302 282724004 TGTCTGAGGGATTCTGCAG 59 282724061 282724082 TCCCATATCATCTCTAGGACAC 58 Novel Rattus norvegicus 81 AABR07007146.1 ENSRNOG00000055064 ENSRNOT00000088930 3 1 1 97 1 282723301 282724003 ATGTCTGAGGGATTCTGCA 58 282724061 282724082 TCCCATATCATCTCTAGGACAC 58 Novel Rattus norvegicus 81 AABR07010040.3 ENSRNOG00000060371 ENSRNOT00000092076 2 1 1 83 2 121772782 121774058 TGTATAAGCAGGACCTCCA 57 121772717 121772735 GAAAGTAGTCTTCGGTGCA 58 Novel Rattus norvegicus 81 AABR07010500.1 ENSRNOG00000059233 ENSRNOT00000080667 1 1 1 60 2 137453764 137467503 TCTCAATGGAAGACAGGTTCC 60 137453724 137453745 TCTGTCCCATATTTCTGTACCA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07010502.1 ENSRNOG00000051733 ENSRNOT00000084083 2 1 1 62 2 137473722 137473744 CCAACCAACCTCATGTATTACTC 59 137472768 137472792 GAGGATGTCACTCCTAAATATTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010585.1 ENSRNOG00000059063 ENSRNOT00000084748 2 1 1 122 2 141576463 141576481 GACATACATCCAGCCAGTG 58 141577881 141577899 CTGGAGAGCTGAAGGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011084.1 ENSRNOG00000057289 ENSRNOT00000086020 1 1 1 80 2 157359156 157359177 TCCTTTGAATGTGTCTCTATGG 58 157359217 157360147 TAAACCTCTTCCACACTTGG 58 Novel Rattus norvegicus 81 AC131411.1 ENSRNOG00000052870 ENSRNOT00000078297 1 1 1 82 14 11297312 11312057 CTAGCACAGCACATGATGG 59 11297248 11297268 TTGACATCAGACACTTGACTC 58 Novel Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 3 1 1 61 2 206157124 206162741 CTCAGGAAATTTGTATTTGCCC 58 206157084 206157105 CTAAGGAGATGTGAGGGAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013249.1 ENSRNOG00000061460 ENSRNOT00000080106 3 1 1 83 2 230384682 230387819 GGAAAGAGGGACACATCCT 59 230384617 230384636 TGATCCATCTCTGTGGACAG 59 Novel Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 3 1 1 143 2 157854846 157854864 ACTTCTGATTCGCAAGCTC 58 157854988 157855007 TGGATAGAACACAGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 1 1 1 60 1 149718225 149718243 TTTGTCCTTGCAAGTGTGC 60 149718264 149718286 CATTAGAATGACAGAAGGACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 1 1 1 60 19 28044386 28044404 ATCGCCTGAGGTTTCTGAC 60 28041825 28041843 GGATTTGGCCTGAAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000014713 2 2 4 80 3 140156490 140156508 GAATGTTGCCAAGCAGGAC 60 140156551 140159508 AGTGTATTCAGAGGTGTGCA 59 Novel Rattus norvegicus 81 AABR07027511.1 ENSRNOG00000058793 ENSRNOT00000090457 2 1 1 81 17 34940783 34941458 TATATTTGAAGGTGCCCTTGG 58 34940722 34940741 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 AABR07043169.1 ENSRNOG00000024754 ENSRNOT00000031820 1 1 1 64 19 25180866 25180884 GATAAGCAAAGGTCAGCGG 59 25180816 25180834 TCTTGGAGAAACTGAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039139.1 ENSRNOG00000050331 ENSRNOT00000074830 1 1 1 70 X 69152300 69152318 TGGTGCTAAATTGGGAGAG 57 69152244 69152262 GATATTGTCCACTGGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027753.4 ENSRNOG00000058263 ENSRNOT00000079139 2 1 1 60 17 43817533 43817551 ACCGGAATCTCTTCCAAGG 59 43817575 43817593 GCTCGAAGATGTCGTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030543.1 ENSRNOG00000051634 ENSRNOT00000090759 3 1 1 62 10 92771475 92771493 GACCGAAAGTGAACGTCTC 59 92771515 92771537 CCCTCATTTGATTTCTGAAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051 2 1 2 80 15 36897697 36897715 ATTCCAGTTCTGCCTTCCT 59 36897757 36898032 TTAGTTGGGATGAATCCAGGG 60 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 1 2 4 87 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77749598 77902221 GTATTCCCTCCGTCATACTC 57 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 1 2 3 80 9 4093078 4093098 AACTGGAGTCAGATTCAGACC 60 4093138 4095005 CCATGTTGTCCCTGATTTAGG 59 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043 2 1 2 86 10 4487999 4488719 CAGGCGACGATAAGAAAGG 58 4488769 4488787 TTCACTCCCATTCAACAGC 58 Novel Rattus norvegicus 81 AABR07024498.1 ENSRNOG00000052713 ENSRNOT00000077284 2 1 1 80 16 1953222 1953240 TTCCACAGCTTTCCAAAGC 59 1953283 1953304 AATCAGCCTCAGGTGTACTG 60 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000055658 1 1 3 80 5 164954219 164954627 TGCTGTCCATCAAGCTAGG 60 164954671 164954689 CGCTCAAGTCTGCATACCT 60 Novel Rattus norvegicus 81 Rn60_20_0055.3 ENSRNOG00000058373 ENSRNOT00000081611 3 1 1 95 20 3398540 3398560 CTGGCTCTTCTCTTTACTCTC 58 3395531 3395549 GCTTCCTATCTCTGGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000085761 3 1 3 60 20 3365917 3365935 AGCCCATCTCTTTCCTCTG 59 3365959 3365977 GCCTCAAATCCTACCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000084723 2 1 3 102 20 3367395 3368488 GAGGATCTTTACCGGACCT 58 3368637 3368655 GTGAGTGTGAAGGCATCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057202 ENSRNOT00000082280 1 1 1 60 5 71444180 71444198 CTGCTGTGTTACTTGGGTG 59 71444219 71444240 CACAGACATAGTCTTTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 1 1 1 94 1 142027712 142027731 GTAGTGATCAATGTCAGCCC 59 142027790 142027808 TCAACACTCCAGGTAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 3 1 1 82 10 35058564 35058582 TGTGTCACTCCCAGATTGG 59 35058499 35058518 GTAGAGCTACGTTCACAGCT 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000056700 1 1 4 133 X 73461232 73463284 GAAGGTGACATTAACAAGACTC 57 73463377 73464071 TTGATCTTCTTCCTTTCCCG 58 Novel Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000071700 1 1 4 80 9 81650541 81650559 AAAGAGTCCAGGTAGGCTC 58 81650603 81650877 GAGGCTCAATCACATCCTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052155 ENSRNOT00000077187 3 1 1 60 13 96290031 96290052 AATACAGAGAAGATTAGCCTGG 58 96290072 96290091 GGAATGCTTCATGAATTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045491 ENSRNOT00000070758 2 1 1 60 1 47042011 47042031 ATGCATATGGTCTCATCTGCT 60 47042051 47042071 TCCACATACTAATCAGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055163 ENSRNOT00000078508 1 1 1 60 13 113962486 113962504 GGCCATAGGTGGTAGACAG 59 113962444 113962464 TGTTCATAGGTCAGAACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055163 ENSRNOT00000078508 2 1 1 60 13 113962484 113962502 CCATAGGTGGTAGACAGGA 58 113962442 113962464 GATGTTCATAGGTCAGAACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043040.1 ENSRNOG00000056923 ENSRNOT00000080685 3 1 1 60 19 18820057 18820079 GTAATGCTTGGTTGCTCTATGAG 60 18820097 18820117 TGCTGCTCCTTTCTAAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.1 ENSRNOG00000052845 ENSRNOT00000084538 3 1 1 171 17 44528337 44528355 GAGGGACAACAAGAAGACG 58 44528490 44528508 CTTAACCTTGTGGTGGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 2 1 1 62 4 155169732 155169752 AGGCTAAGAAGAAATCACTGG 58 155169778 155169796 ATGTCTTACTAGCCGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 2 1 1 62 18 25313906 25313924 GATGGGAGGAATCAAGGTG 58 25313858 25313876 GAGCCAATGGTATTGGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 3 1 1 61 10 28192461 28192479 GCCACTCCCTGTTAGATCC 60 28192503 28192524 CTTGATTCAAATGGTGAGTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 2 1 1 60 8 53903707 53903727 TGCCAGGATCTATCTATGGAC 59 53903748 53903769 CTGGGAATTCCTTTGAAATTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 1 1 1 60 13 54914980 54914998 AAAGAATCTCCTCCCAGCA 58 54915022 54915042 GTAATAAAGTACTCGCTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 1 1 2 85 6 139486789 139486807 CAGCTTGGCTTTCCTTGTC 60 139486966 139486984 CAGGCTGTACTAAGCCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052 3 1 6 81 10 74883440 74883460 CACACTATGAGAACTACAGGG 58 74883503 74883711 GATCTGTCCTTGCGATTCC 58 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672 2 1 2 102 16 33375796 33375825 ATCAGGAACAGTTAAACAACCC 59 33375888 33375906 TCTGCACTAAACCCGTCTG 60 Novel Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 3 1 1 90 2 209779298 209779316 CTTGGATGACAGTGCAGTG 59 209779370 209779389 TTCTTTCCTTCACGTGAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 3 2 2 142 10 89173860 89174649 CATTTCCTAGCAGCACAAGG 59 89174753 89174994 CGGCTGTAACGTAAAGAAGG 59 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 3 2 3 61 20 4871818 4871839 CATCTCATTGTCTAACAAGCCC 60 4871531 4871549 TTTGAGTAGCAGCTAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 2 1 1 68 8 126975980 126975998 GTAAGTTCAGCTCGCAGAG 58 126976819 126976838 GAAGTCTCCCTGGGTAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280 1 1 2 80 14 32897002 32897168 ACAATCAACTACAATCGCTGAC 59 32896943 32896963 GAGTACCGGACTCTTCTTCAG 60 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 2 2 2 80 14 61651301 61660208 CATTCTTAAGTATATGACTGACGGG 59 61660244 61660264 ATTATCACACCATAACGCTCC 58 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 3 2 2 80 14 61651244 61651262 GTTAGGCCAGGAAGTTGGA 59 61651300 61660207 CCGTCAGTCATATACTTAAGAATGG 59 Novel Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000079528 1 1 2 80 10 67111164 67111183 AGAGAAGTGAACTTGACCTG 57 67110306 67111121 CAGAAGCACACTCTAGCAG 58 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 2 1 1 60 4 132914649 132914667 CCTTTGTTCTCACTCAGGC 59 132918166 132918187 CTCATGTTGCCTTTAATGTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 1 1 1 73 14 112997162 112997182 GTGGATGTCATGTTACAATGG 57 112969509 112969528 TCATCGTGCACATCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 3 1 1 68 18 21111559 21111579 ACTGTGACAGACGTCTTACTG 60 21113406 21113429 CTGGTTCTTCAACAACTCTAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 1 1 1 76 6 26142048 26142066 CCTGACTCTGCTTCTCACC 60 26145358 26145376 CTTCTCAGGCCTCTGAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 2 1 1 109 6 38807479 38807498 GGAGCTTCAACCACAAAGAC 60 38806206 38806225 TTAGAGCAACAGAGCCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613 3 1 2 81 15 87464304 87470773 TTAGAAGATGGAAGAGGCCC 59 87464242 87464260 ATCTGAGTCTGGCTAGAGC 58 Novel Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 2 2 2 80 3 4734835 4735903 ATCATGAGGAAGGTGACCAC 60 4735946 4735964 GGTCCTCTTCCTTACTCGC 60 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 1 2 2 84 6 64609021 64609039 AGAGGTGACAGTGCTTGAG 59 64593182 64608973 TGTCTTCCAGTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 1 1 1 61 11 27599621 27599642 TGAGTCAGAAATTGAGAAGCTG 59 27607298 27607316 TGTGATCTCGCTCCTTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 1 1 1 76 13 41853474 41853495 CAGAGTGGAGACTAATGTTCAG 58 41860734 41860753 TACTCCAAGTGAAGGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 2 1 1 61 11 37474948 37474968 ATTAGAAGTCAGGATGTCCAC 57 37459815 37459833 TCCACACGGACTGTATAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 2 1 1 60 13 80460431 80460449 GTTGTGACGTTCAGATCCG 59 80457717 80457736 TACTAGGAGTCCAGTCAGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 3 1 1 60 3 66080130 66080149 TGACAAATCTCCACAACTGC 59 66075096 66075117 CCTCATACAGAGTATGTAGTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 3 1 1 60 13 90238723 90238742 GAGCAACAGCAAGGTAACTG 60 90221457 90221475 TTGGGAGCTCATTCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 2 2 3 80 12 3308128 3308147 ACTCTTCTGGCAAATCACCT 59 3308188 3309528 GTCCTCTTGATGCATTATCGC 60 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 3 1 1 60 12 22339021 22339040 GCAGAGATGGTAAAGGTGTC 58 22339399 22339419 GTACAGCTATTGGAGATCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 3 2 3 69 12 22360251 22360269 CAGAATTGAGTGTGGCTGC 60 22360717 22360736 TCTAGGAATCCAGGTCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 3 1 1 66 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20525027 20525045 CCACCTCACATGTGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 1 1 1 60 16 24630690 24630708 CTTTGCTCCCAACCTTGAG 59 24632220 24632241 TTCCTTGTAAGAACTCCAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 1 1 1 69 12 22601939 22601957 TTCTGCCAATCCATCAGGG 60 22604851 22604869 CTCCTGGCTTCTTGAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 2 1 1 61 9 29366498 29366516 CTTTATGCTGATGAGGGCA 58 29403358 29403376 TTACAAGATGGCCTCTTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 1 1 1 60 12 33687316 33687337 TTCTAAATTCAAGGCACACCAG 59 33686607 33686626 TCAGGTGATCAATCACTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 3 1 1 70 9 59448122 59448142 CCTTCCTGTTCATAGTCACAG 58 59450901 59450920 GTATCTTCCATAGCTTGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 3 2 2 80 3 177390151 177390169 AAGCAGGAGAAGTGGATCC 59 177390211 177392118 CTCTTTCCCTTCTTCCTCAGG 60 Novel Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 2 2 2 84 7 26146116 26146449 GAGACTATATTAGGCGTTATTTGCC 60 26146056 26146075 ATACCTTCTGGTGCATTCCA 59 Novel Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 1 1 1 60 1 257044019 257044038 TGTACTGTGCACCTAAAGGG 60 257041631 257041649 TGTCCTGCCTCAGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545 2 1 2 82 17 19057696 19057714 ACCAGTGAGTTTCCCTGTC 59 19057760 19059723 AAGTCGGTGTGAGAACCTG 60 Novel Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 2 1 1 76 7 69338568 69338586 GTTCAGAAAGTGCAGGTGG 59 69339893 69339914 TCTTGCAAACAACTCTTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 1 1 1 78 1 278524945 278524963 ATCCTGACCATTCACACGT 59 278522692 278522710 TTCTGTCCATAGGCTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 2 1 1 60 7 83991190 83991210 GACCTGAAAGTTCTGAATGCA 59 83989707 83989725 CCTCCATGTCTGGAAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 3 1 1 60 2 22867890 22867910 TGTCTTTGGTACTTGTTTGCC 59 22864578 22864596 CAAATCCACAGAGGTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 1 1 1 60 2 38743654 38743672 CAATGCTTGGCTCCTTCTG 59 38745790 38745809 GTCTTTCAAGGACAACACCG 60 Novel DesignNoJunction Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 1 1 1 68 4 44646938 44646956 CCAGCAGTGTGAAAGACAG 59 44639575 44639593 TAATGACCAGACTGGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 3 1 1 61 20 38137073 38137094 TTCTGACATCCATTCTATCCAG 58 38140138 38140156 TTCAGAGGGCAGTATGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 1 1 1 106 8 114178845 114178863 TTAAACAACCACACCGGTC 58 114176714 114176733 AGAACTCCACAGATCATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650 3 1 2 80 4 68428218 68428803 CTTCTGCATGAGTTTCTGGC 60 68428846 68428864 ACTGACTAGGAAGGCTGGA 60 Novel Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 3 1 1 80 2 68819542 68819561 AATTTGGAACCTACCTCAGG 57 68820157 68820180 CCCTGGAGTTTAATCTTACTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 1 1 1 60 7 138150656 138150674 AGCGATGTCTCAACTCTCC 59 138150111 138150129 CACATCCAGCAGAGTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 3 1 1 66 2 87734904 87734923 TTAATCAGCCCTAAGCTCAC 57 87785160 87785178 AAACACTCCAATGAGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 3 1 1 173 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659569 144659590 AAGCCATTTGTGGAAGTATACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 2 1 2 80 2 156399635 156399653 GAGATGGGACCACATCACC 60 156399218 156399596 CCATCAAGTTCCATAGGATTTGAC 60 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 2 1 1 60 14 8895670 8895690 CTGAATATGGAGCTCACTGGA 59 8894454 8894474 TCTATCCTGAAGCTCTAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 2 2 2 80 2 254033891 254034509 TCTTGATCAGGAACTGACTACC 59 254034550 254034568 CTTAACTCTCGCTTCGCCT 60 Novel Rattus norvegicus 81 Pde5a ENSRNOG00000014443 ENSRNOT00000019638 1 1 1 80 2 226956750 226956768 CATTGTTCTTCACAACGCC 58 226956808 226961167 CTAGCAAGGTCAAGTAATACCTG 59 NA Rattus norvegicus 81 LOC679475 ENSRNOG00000042970 ENSRNOT00000065242 3 1 1 241 2 193100914 193100932 TTCTTCCTGCTGTAGCCTG 59 193083972 193100710 CAAGTGATGCTTGGCTACTG 59 NA DesignNoJunction Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 3 2 2 80 15 36588783 36588801 TCATCGTTGCACTGATCCT 59 36588845 36589297 ACCAGTACTGAACCCTGAG 58 NA Rattus norvegicus 81 Olr1670 ENSRNOG00000049000 ENSRNOT00000044420 1 1 1 60 20 386617 386637 TCTCCTTTCTGGACATTTGCT 60 386656 386677 CCAAGGTTAGTTAGCATCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 1 3 3 80 11 38044628 38044648 CCTATGATGACATCGAAGTGG 58 38044688 38045268 CAGCAATATGGTTCTGACCTG 59 NA Rattus norvegicus 81 Srsf11 ENSRNOG00000029592 ENSRNOT00000044236 2 1 1 80 2 264845314 264845335 AAATAGAGGAAGCCATGAAGAG 58 264843827 264845274 TTTCTTCCTTCTTGTCTGGC 58 NA Rattus norvegicus 81 Zic1 ENSRNOG00000014644 ENSRNOT00000019860 3 1 1 60 8 98735684 98735702 TGTGCGATAAGTCCTACAC 57 98734946 98735661 GACTCATGGACCTTCATGTG 58 NA DesignRelaxed Rattus norvegicus 81 Olr1139 ENSRNOG00000048018 ENSRNOT00000035560 2 1 1 60 8 19179826 19179850 CTCATCATTATCTTGGCTGTAATCC 60 19179790 19179814 GAAAGAAGTACATTGGAGTATGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Siae ENSRNOG00000031266 ENSRNOT00000044293 1 1 1 80 8 40096877 40096896 TTCAGCCTGAGATAAAGCCC 60 40096939 40098319 CACATGGGACAAACCTCCT 60 NA Rattus norvegicus 81 Nadk ENSRNOG00000016936 ENSRNOT00000022900 1 1 1 80 5 173012417 173012435 ATGGTTACACCCATCTGCC 60 173012477 173013081 CAGCATAATCTTCAGCTCGAC 59 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049877 ENSRNOT00000071644 1 1 1 60 8 41235328 41235351 CCATGTACTACTTTCTCTTCAACC 59 41235368 41235388 GTTATGACAGAGGAGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000086854 3 1 2 93 15 38096049 38096067 CCAATACGTACCTCTCGCA 59 38096507 38096525 CTCTCACTCTAACGGGCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910402 ENSRNOG00000060027 ENSRNOT00000083497 2 1 1 60 2 35416781 35416800 AACACCCATGTACTTCTTCC 58 35416740 35416758 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047219.1 ENSRNOG00000048760 ENSRNOT00000075052 1 1 1 78 5 24694098 24694116 AAGAAGACAGCAATGGCTG 59 24694159 24694177 AGACCTTGACAGGCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Pou2f3 ENSRNOG00000009118 ENSRNOT00000012170 1 1 1 80 8 47422758 47424781 TTCAAGATAACCCTAAACCCAG 58 47422699 47422718 CTCTTACCACTTCCTTCTCC 57 NA Rattus norvegicus 81 Mir3554 ENSRNOG00000035606 ENSRNOT00000053729 2 1 1 60 5 107206585 107206605 GGAAAGATGGCAATATGTTGG 58 107206545 107206563 CAAGATGCTGGCATAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk38 ENSRNOG00000000519 ENSRNOT00000059194 2 1 1 80 20 6228001 6228022 GAAGGAAACTTTGACCTTTCCC 60 6227787 6227961 CATTCACAGCAGAACCTCAG 59 NA Rattus norvegicus 81 Lao1 ENSRNOG00000007232 ENSRNOT00000009520 1 1 1 80 5 138014013 138014032 CTCAGAAACAAGGAGGAAGG 58 138014073 138018038 ATAGGTGTGGATTATCCTGTG 57 NA Rattus norvegicus 81 Pbxip1 ENSRNOG00000020673 ENSRNOT00000028057 2 1 1 81 2 188770479 188770692 CCTTGAATGGAGAAGAGATGC 59 188770735 188770753 TTGGCCTCAGACTCTTCTG 59 NA Rattus norvegicus 81 Olr453 ENSRNOG00000055374 ENSRNOT00000084321 1 1 1 60 3 73089775 73089796 CGGCTCTAACATTATCAATCAC 57 73089815 73089835 ACAGATGAGGGAAAGGATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365336 ENSRNOG00000003783 ENSRNOT00000005021 3 1 1 60 X 53629280 53629299 AACAGACATACCTGTCGGAG 59 53629321 53629340 TAGAGCTGCAACTGGATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033817.1 ENSRNOG00000046133 ENSRNOT00000047347 1 1 1 84 11 39443173 39448311 GGGTCCATAGCGATTAGGA 58 39443107 39443128 CTATGTCCAGCTCCTTAAAGTC 58 NA Rattus norvegicus 81 Klhl18 ENSRNOG00000020880 ENSRNOT00000056141 2 1 1 96 8 118675868 118679739 GAATAGCAAGCGAAGTGCC 60 118675790 118675808 CTCCACAGAGTTGAGGGAG 59 NA Rattus norvegicus 81 Nop9 ENSRNOG00000020321 ENSRNOT00000027604 1 1 1 80 15 34439085 34439103 CAGCCGTGTATTTGATGCC 60 34439147 34439458 TTCTGCTCTCCCAGTTCAG 59 NA Rattus norvegicus 81 Bace2 ENSRNOG00000001953 ENSRNOT00000002679 3 1 1 80 11 37858686 37864565 CGCACATCTCTGATTCCAG 58 37864606 37864627 TGGAGTTTCAGAATTTGTCCAG 59 NA Rattus norvegicus 81 Atp11c ENSRNOG00000003472 ENSRNOT00000051319 2 1 1 80 X 143443350 143453404 CTAACACCTCTGAGTGTGCT 60 143443289 143443309 TTCCTGAAATGGGATGATTGC 59 NA Rattus norvegicus 81 AABR07012291.1 ENSRNOG00000029760 ENSRNOT00000064950 2 1 1 208 2 192381697 192381715 TGTCTTACCAACAGCAGCA 60 192305647 192305665 CTCTGTGCACTTTGGAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 1 2 2 80 2 30361889 30361910 AGTGATGATTCTGACATTTGGG 59 30361949 30362147 TAGAGCATGCTTAAAGGAAGC 59 NA Rattus norvegicus 81 Slc1a1 ENSRNOG00000014816 ENSRNOT00000020272 1 1 1 80 1 247021018 247024722 ATGTCTGAGAACAAGACAAAGG 59 247024762 247024781 GAAGATAATCAGGCCCAGGA 59 NA Rattus norvegicus 81 Abcd3 ENSRNOG00000011929 ENSRNOT00000016739 2 1 1 80 2 225337078 225338324 GAAACACCACGAGTACTACC 58 225337017 225337037 AACTCAACTGTGTCTTCTGTG 59 NA Rattus norvegicus 81 Ccr1 ENSRNOG00000006715 ENSRNOT00000008772 1 1 1 126 8 132998201 133001928 TGGAAACACAGACTCATTGTC 59 132998095 132998114 TCATATTCTGTGGTTGTGGG 58 NA InUTR Rattus norvegicus 81 Gdf6 ENSRNOG00000007810 ENSRNOT00000010266 3 1 1 83 5 23056847 23071611 TAGACAGAGGACTGGACGA 59 23071658 23071676 CTTTGTCTGAGAGCGTGGA 60 NA Rattus norvegicus 81 Ubtd1 ENSRNOG00000013813 ENSRNOT00000018485 1 1 1 153 1 261278080 261278098 ATGAGTTCTGGGACACAGC 60 261278214 261279491 CAAAGAGTTCCATGAGGCAG 59 NA Rattus norvegicus 81 Dppa3l1 ENSRNOG00000022376 ENSRNOT00000036219 3 1 1 60 8 60683563 60683582 TCAGATGAAAGACGAAGAGG 57 60683522 60683540 TAGTGTTTCTGGTTGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547059 ENSRNOG00000046652 ENSRNOT00000072762 1 1 1 80 1 88325007 88326682 TGCTTTCACTGAGTCTTGC 58 88326726 88326744 TCATAACCATCCAGGGCTC 59 NA Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000071353 2 1 2 81 2 45801863 45801881 CTCTGGGAAGACCAGTCTG 59 45801925 45858992 GATATTGTCAGCTCCTGTGG 58 NA Rattus norvegicus 81 LOC100912317 ENSRNOG00000045793 ENSRNOT00000074963 1 1 1 60 8 42266137 42266158 TACATTCTTGGTTTCCATGCTG 59 42266177 42266197 CTTGACATCCTTGTTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr97 ENSRNOG00000011001 ENSRNOT00000014730 1 1 1 60 1 168501146 168501168 TGTGCCAGGATTAGAAGATACTC 60 168501108 168501129 GAAGTACATGAAGCTGAAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000052129,ENSRNOT00000089371 1 3 6 80 1 76612916 76612934 CCACGACTCATAACCTCCC 60 76604207 76612873 GAGATAGATCACCTTGGCCT 59 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343,ENSRNOT00000086474,ENSRNOT00000080147 3 3 3 80 14 86152935 86152957 ATGAGTTCCTACTGGAGTATGAC 59 86151744 86152897 CGATGATCTTCTCGTACAGCT 60 NA Rattus norvegicus 81 AABR07033979.1 ENSRNOG00000042474 ENSRNOT00000052182 1 1 1 91 11 46739121 46739139 ACTCCGGCTTCTAGTACCA 60 46739191 46739231 ATGTGAGAAGCATCATAGAGGT 59 NA Rattus norvegicus 81 AABR07070594.1 ENSRNOG00000053282 ENSRNOT00000071321 3 1 1 60 8 76239673 76239691 GAGACTCAGCACTGAAACG 59 76239631 76239651 TATCGTTCCTCAAACTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474,ENSRNOT00000067506 3 2 2 80 4 179427547 179427565 CCCAAAGCATCCATGAAGC 60 179427705 179427993 GAATTCTGCCTCCACTTCCT 60 NA Rattus norvegicus 81 AABR07027450.1 ENSRNOG00000045599 ENSRNOT00000058388 2 1 1 80 17 31779673 31780082 GATTCCTGCTTCCAGAGGT 59 31779611 31779631 ATAGAGACTTGACCTCCAAGG 59 NA Rattus norvegicus 81 AABR07013776.1 ENSRNOG00000048082 ENSRNOT00000072487 3 1 1 60 2 256154209 256154229 AGGTCGATGGAATGATCAGAG 60 256154169 256154192 TCTTCATAGATTACCTGACCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116,ENSRNOT00000078856 3 2 2 81 11 47268420 47268440 AGCAAATCTGGAACTCATTCG 59 47268481 47268628 GTTTCCATTGTAAGCCTTTGC 59 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 3 2 2 90 8 132780819 132780923 ACCATTGAAACACAGGCTG 59 132780747 132780768 GTTGATTTCCTTGATCAAGCTG 58 NA Rattus norvegicus 81 Nt5e ENSRNOG00000011071 ENSRNOT00000015057 1 1 1 80 8 95997465 95997483 TCATTGCCCAGAAGGTGAG 60 95997524 96005486 AAGGTGGATTTCCTGTGTAGAG 60 NA Rattus norvegicus 81 Irf2bp1 ENSRNOG00000014252 ENSRNOT00000019075 3 1 1 60 1 79913117 79913137 GTCCATACTCTACAGAGACCC 59 79913159 79913177 GCCACATTCTTAAGGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 3 2 2 86 1 89099529 89099629 GATGAATGGGAAGTACGTGG 59 89099462 89099480 TTCTTACGGACCACATCCA 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000057734,ENSRNOT00000082549,ENSRNOT00000068553 3 4 6 81 17 84168236 84168255 CTACAGCTTTGAGCGTAACG 59 84167029 84168194 TCCTGAGTGTATTTCACCGAG 60 NA Rattus norvegicus 81 Selenbp1 ENSRNOG00000047158 ENSRNOT00000071603 1 1 1 80 2 195418401 195418419 AGTGGAGAAGGTGATCCAG 58 195418241 195418357 ATGTCGGTGATCAAACCAG 58 NA Rattus norvegicus 81 Sh3bp2 ENSRNOG00000013747 ENSRNOT00000058111 3 1 1 80 14 81445103 81445124 CTGCATCTACTACTTCAAGAGC 59 81443398 81445062 CGCATCACTCTGTTGTAGC 59 NA Rattus norvegicus 81 Rn60_X_0232.1 ENSRNOG00000031906 ENSRNOT00000042767 2 1 1 82 X 22775932 22775953 CTGAAAGTTTGGATGAAACAGG 58 22776027 22776046 AAAGCATCTCCGTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07006278.1 ENSRNOG00000020980 ENSRNOT00000028483 2 1 1 80 1 227901792 227901812 CTAGAATTCTGCATTGCTGTG 58 227901853 227904513 CACTACAAGAACCTCACTGG 58 NA Rattus norvegicus 81 Ceacam11 ENSRNOG00000017620 ENSRNOT00000023686 1 1 1 80 1 79399741 79402695 AGTAAACAAACCTGGAAGTCAG 59 79402736 79402754 CTTTGCTTCTTCGAGGTCC 59 NA Rattus norvegicus 81 Fbxo11 ENSRNOG00000016396 ENSRNOT00000021998 2 1 1 80 6 11682310 11683361 CAACAGTTGTATAAAGGTGCAC 58 11682251 11682269 TCTCCCTTTGTATCTGGCA 58 NA Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 3 2 2 80 6 50930950 50931646 AAGATAAGGATCCATGATGACC 58 50930891 50930909 TGTAATCCAGGACACTCCT 57 NA Rattus norvegicus 81 Fgd2 ENSRNOG00000000528 ENSRNOT00000041665 2 1 1 81 20 6977405 6977798 TTGACCAGGTGTTCTTCCA 59 6977843 6977861 AAGATGAGCTTCACCACGT 59 NA Rattus norvegicus 81 Dnajc18 ENSRNOG00000019995 ENSRNOT00000027194 2 1 1 80 18 28490215 28493592 GGTACAAAGAATCAAGAAGTGC 58 28490156 28490176 TTCTTAAGCTCTTCATCGCTG 59 NA Rattus norvegicus 81 Atg2a ENSRNOG00000060707 ENSRNOT00000090100 1 1 1 80 1 221621573 221621593 CAGTCTCAGAGTACCTTCTCC 59 221621634 221622015 TGTCTCATCCTTAGCCTCAC 59 NA Rattus norvegicus 81 Msl3 ENSRNOG00000004016 ENSRNOT00000065814 3 1 1 80 X 27019900 27019922 CTATAGAGATCCCTGAAGTTCTC 57 27019961 27020630 GTTTCACTAACCGCTTTCTC 57 NA Rattus norvegicus 81 Mageb7 ENSRNOG00000042751 ENSRNOT00000065450 3 1 1 60 X 54939472 54939490 ATGCTGAATGTTGTCACCA 58 54939430 54939450 AGGCTTTCTTAAGGATCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr917 ENSRNOG00000049555 ENSRNOT00000073566 1 1 1 60 4 13644976 13644994 AGACACTTGGTTCATGGAG 57 13645014 13645036 CGTTATAATGAGAGTCCGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr326 ENSRNOG00000021072 ENSRNOT00000028606 3 1 1 60 1 228557941 228557961 GACATCATTTCTCATCCTCCT 57 228557901 228557921 GATCTTCAAGACAGCAGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1254 ENSRNOG00000050688 ENSRNOT00000052324 1 1 1 60 8 42381828 42381848 GCTGAATTCTCACCTTCACAC 60 42381788 42381812 GTCTACAAAGGACAAGTTAAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc157 ENSRNOG00000005147 ENSRNOT00000006911 1 1 1 80 14 84377737 84379459 CCAGATCCAAAGCTCTAGCA 60 84377676 84377694 TGTAGGACCTGGATTCGGA 60 NA Rattus norvegicus 81 Mrgprx4 ENSRNOG00000014242 ENSRNOT00000019061 1 1 1 60 1 103380143 103380162 CATTGTACTCTGGCTCTTGG 58 103380102 103380121 GAGGACGTAGACTGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 1 1 2 65 X 58181490 58181509 AACATTCAGGCACTAATGGT 58 58112915 58181283 AAGGATAACTGATGCATTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Smpd1 ENSRNOG00000017977 ENSRNOT00000024224 1 1 1 80 1 170385878 170386131 GAATCGAGGAGACAAAGTGC 59 170386171 170386192 TTGTAATAGTTCCAACTCCAGC 59 NA Rattus norvegicus 81 Zfp664 ENSRNOG00000021705 ENSRNOT00000001338 3 1 1 60 12 37185098 37185116 TGTGAAGAGTGTGGGAAGG 59 37185056 37185075 GGACTCTTTGATGCATGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralb ENSRNOG00000002440 ENSRNOT00000003413 3 1 1 81 13 35510914 35510934 CTCACTGTCCTTCACAAGGA 59 35510852 35510871 CGTCATACATGAACTGGAGC 59 NA Rattus norvegicus 81 Olr128 ENSRNOG00000016052 ENSRNOT00000021468 1 1 1 60 1 168930367 168930385 CCATCTGTTACCCACTGAG 57 168930325 168930343 CCAATCTTGCCAATGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp282 ENSRNOG00000026981 ENSRNOT00000037248 3 1 1 91 4 77567754 77569392 ACAGAATCCATCACTGACTCC 60 77569445 77569463 TCCTGCTGATCCCATACAC 59 NA Rattus norvegicus 81 St14 ENSRNOG00000005903 ENSRNOT00000009139 1 1 1 80 8 32241545 32241563 TACCCATGTCTTTCCTGCC 59 32241153 32241501 ATCAGTGCTCCAGTTCCTC 59 NA Rattus norvegicus 81 Tiprl ENSRNOG00000003048 ENSRNOT00000004083 1 1 1 92 13 83496007 83496674 GAAAGTAGGACGGAGGGTG 60 83495933 83495951 TTCTCCAAGCAACGTTCCT 60 NA Rattus norvegicus 81 LOC100359679 ENSRNOG00000024838 ENSRNOT00000034385 1 1 1 80 18 27376688 27376711 GACTCTGATCATCACATATACCAC 59 27375952 27376650 CCAAGTACTCAGAACCTGGA 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408,ENSRNOT00000050010 2 2 2 80 1 224340362 224343630 TTGCACCTCAAGAAATGGA 57 224340300 224340320 TAGCAGCATAACTTAGAGCAG 58 NA Rattus norvegicus 81 Vps52 ENSRNOG00000000470 ENSRNOT00000000549 1 1 1 80 20 5435890 5435910 TCTGTATCCACATCGTTCTCC 59 5435518 5435848 CCTGCTCCCAGTATCTGTC 59 NA Rattus norvegicus 81 Nrn1 ENSRNOG00000050767 ENSRNOT00000073967 2 1 1 96 17 27969344 27969362 AGACTGTTTGCTCAAGCTG 58 27926265 27969284 ATCCTCCCAGTATGTGCAC 59 NA Rattus norvegicus 81 Gucy2e ENSRNOG00000015058 ENSRNOT00000020513 2 1 1 80 1 163412011 163412584 CTTACTTTATCAGGTTAGGCCTC 59 163412624 163412642 TGAGCTCTTGAGGTGTCAG 59 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000086893 2 1 2 80 18 30958887 30962055 GTCACCTACAGAAACAAGGC 59 30964434 30964454 CTGTATCGAACTGGTTGTTGG 59 NA Rattus norvegicus 81 Zfp513 ENSRNOG00000005298 ENSRNOT00000050102 2 1 1 80 6 26538306 26538324 GAGGAAGAGGAAGAGGAGG 58 26538366 26539143 CTGAGAGTCTCCTTCAGAGTC 59 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 3 2 2 80 1 243376015 243376033 GTCTGCAAGCACAGAAGAG 59 243376075 243386090 CATTCCAAGTGATTTCCTGCA 59 NA Rattus norvegicus 81 Rn60_X_0594.7 ENSRNOG00000051250 ENSRNOT00000075907 2 1 1 60 X 58579899 58579917 AATGAATTGGGAACAGCCT 57 58579857 58579877 AGTCAATGATAGCCAATGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684107 ENSRNOG00000047649 ENSRNOT00000074999 3 1 1 80 17 38925911 38925929 GAGACTCTCAACAGTTGCC 58 38925970 38927467 CTCTTCAAGTGGGATCTTTCTG 59 NA Rattus norvegicus 81 Neurod6 ENSRNOG00000026055 ENSRNOT00000016182 2 1 1 141 4 85915048 85915066 TCTAGAGGCTCCAGGAGAC 60 85913631 85913650 AGACTCGTCAAACGGTAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 3 1 1 68 1 99864135 99864153 ACGCCTGAACAAGATAGAC 57 99864184 99864688 GAGAATTAGCAGCTCTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Neurod4 ENSRNOG00000008449 ENSRNOT00000011167 3 1 1 86 7 9703189 9711853 GGGAAAGAGAATCTATAGATGGC 58 9703125 9703144 TTTGTCCATCCAGGATTGTG 58 NA InUTR Rattus norvegicus 81 Slc10a1 ENSRNOG00000005794 ENSRNOT00000007825 1 1 1 80 6 104624007 104630891 ACATGAACCTCAGCATCGT 59 104623945 104623966 TGTAGACGTATAAGAGGAGTGG 59 NA Rattus norvegicus 81 LOC100909911 ENSRNOG00000029341 ENSRNOT00000042264 2 1 1 60 12 40685997 40686017 ATCGTTTCCAGATGAGAATCC 58 40685957 40685976 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agk ENSRNOG00000011509 ENSRNOT00000015744 1 1 1 80 4 68528909 68530750 GAAGAACAGATGAGGCTACC 58 68530792 68530811 GGGTGTGACTCAAACTACTG 58 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402,ENSRNOT00000090181 2 2 2 80 1 170394827 170394991 TGCTCCAAGATCATGTCTG 57 170394765 170394785 ATCCACAAGTTTAGAGTGGTC 58 NA Rattus norvegicus 81 Vom2r28 ENSRNOG00000002641 ENSRNOT00000038169 3 1 1 80 1 69579355 69579374 ACATGATGGACACTTTCACC 58 69579417 69579916 TTTCTGACAGGGTTTCCCA 59 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000078144 1 1 2 113 1 144596267 144598601 GAAGGAGTAACCACATTTAAGTCAG 60 144596178 144596200 GGTAGTACCAAGATCAATTTCCC 59 NA Rattus norvegicus 81 Rn60_X_0627.1 ENSRNOG00000051124 ENSRNOT00000076365 3 1 1 60 X 62035476 62035495 CAAGGAAATCAGCACCACAG 60 62035435 62035454 CCAAGATTCCAACATTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnih2 ENSRNOG00000020247 ENSRNOT00000027421 3 1 1 80 1 220475423 220475538 CACCTCTGGAGGTACTTCC 59 220475361 220475384 GATGTCAGCATTCATGATAGAGAC 60 NA Rattus norvegicus 81 Naa40 ENSRNOG00000021179 ENSRNOT00000028759 1 1 1 80 1 222482171 222482189 AATTCCATCCCAGTTGCCT 59 222481968 222482129 CTGCACTTCATAGCAGTACAG 59 NA Rattus norvegicus 81 Ephb6 ENSRNOG00000014367 ENSRNOT00000019720 2 1 1 80 4 70917314 70917333 AGCTTTGGCATACTCATGTG 59 70917373 70917623 ATTTAGTACCTCCTGGTCACTC 59 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 2 2 2 82 9 85488990 85491057 CCATGAAGGTAGTATCGCCT 59 85488927 85488945 TGATGATGCTGTTGTCGGA 59 NA Rattus norvegicus 81 Il1r2 ENSRNOG00000014378 ENSRNOT00000019415 1 1 1 80 9 46868444 46871006 TGGTATAAGGGCTCCATCC 58 46871049 46871068 GGATATCAATAGGCGTGTGG 58 NA Rattus norvegicus 81 Olr1238 ENSRNOG00000049454 ENSRNOT00000044272 2 1 1 60 8 42296981 42297001 ATCAGTTCATCTAAGGGCAGG 60 42297022 42297041 CAACAATGATGTGGGAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aox2 ENSRNOG00000033923 ENSRNOT00000048027 3 1 1 80 9 65220023 65220723 TCAGATAGTTGAAGGGAAGGT 58 65220763 65220783 TTTGGAATGACAAGCACTCTC 59 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000048344 ENSRNOT00000072062 3 1 1 60 8 42018359 42018379 TCCTCTCATTTACAGCCTCAG 59 42018398 42018419 CTTTAAGGTTCTCTTCACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565415 ENSRNOG00000033274 ENSRNOT00000041621 1 1 1 60 4 80313212 80313233 ATTACCACTTGAAGAGGAACCA 60 80313173 80313197 GTCCATAATTTATCCAGGTTGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0099.2 ENSRNOG00000051213 ENSRNOT00000076768 3 1 1 60 7 9731148 9731167 GCAAGTTAAGGGCAAGACTC 59 9731107 9731126 GTGTTTGATGGGCTCAATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910363 ENSRNOG00000058097 ENSRNOT00000086631 1 1 1 60 2 35192367 35192390 CATTCTTCTCACTATTGTCTCCTC 59 35192330 35192349 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddb1 ENSRNOG00000020715 ENSRNOT00000028188 1 1 1 80 1 226666091 226666793 CAGCTCGTAAAGCTCAATGTC 60 226666833 226666853 GGGTCCTAAGTTGGTAAAGGT 60 NA Rattus norvegicus 81 Utp18 ENSRNOG00000002644 ENSRNOT00000003582 3 1 1 80 10 81578222 81578241 TCAGTACAGTTCCATCCTGG 59 81578073 81578180 GCCATCAACCTGAAACAGTG 60 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 2 2 2 85 1 71253363 71253385 GTGATCTCATTACTGGAACAAGG 59 71253430 71260667 ACATACTCCCAATCAGGGC 59 NA Rattus norvegicus 81 Dnajb13 ENSRNOG00000017975 ENSRNOT00000024256 1 1 1 80 1 165526051 165530036 CCAGATCAAGAAGGCATACC 58 165525990 165526009 AATATTTCTGGTGCAGTCGG 58 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 3 2 2 80 3 146992043 146993281 GCCAGGATGTTCATGTAGTG 59 146993322 146993342 GGTCTTGGTAGCTTCTAAGGT 59 NA Rattus norvegicus 81 Zbtb7b ENSRNOG00000020640 ENSRNOT00000028010 1 1 1 80 2 188706110 188706130 ATATGAGGACCCATACTGGTG 59 188705681 188706069 TCTTCAGCTTGTCATTCCTG 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000085988,ENSRNOT00000019059 2 2 2 80 1 141880340 141880359 ACTCAGAAGTACAGTGTGGC 60 141878697 141880300 TTTCTTCAGCTTGAACTCTTCC 59 NA Rattus norvegicus 81 Lhx8 ENSRNOG00000028348 ENSRNOT00000009370 1 1 1 80 2 260590518 260590538 GAGAAGGTCCTCTGTAGAGTG 59 260589979 260590479 ACTAATCCCATTACCGTTCTCC 60 NA Rattus norvegicus 81 Rn60_5_0437.1 ENSRNOG00000033953 ENSRNOT00000047860 1 1 1 60 5 38981558 38981578 AATGTGATTCCTACTGACACC 58 38981599 38981618 CCACTAGTTGTTCCATAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910120 ENSRNOG00000050642 ENSRNOT00000072645 3 1 1 60 8 42817277 42817298 TGATCCTGCTCATCATAGTCAG 60 42817316 42817337 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gp5 ENSRNOG00000038540 ENSRNOT00000040884 3 1 1 189 11 74015004 74015901 TGCTTCAGACATGCTAAGGA 59 74016051 74016071 CATTCTGAAGAGCAGGATGTG 59 NA InUTR Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 3 2 2 81 8 48571691 48572556 AAAGAATTCAAGTCCTGGTGTG 59 48572598 48572616 TAAGTGGTCCTGAAGCAGC 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615,ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386,ENSRNOT00000080470,ENSRNOT00000084756,ENSRNOT00000068415,ENSRNOT00000014962,ENSRNOT00000074002 1 10 10 80 2 231351434 231351452 TACGGGAATGTAAACGTGG 58 231349954 231351390 GGGAGTGATTCCATTCCTG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615,ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386,ENSRNOT00000080470,ENSRNOT00000084756,ENSRNOT00000068415,ENSRNOT00000014962,ENSRNOT00000074002 2 10 10 80 2 231355496 231355945 AATCCAAGATGATGGTGAACAG 59 231351437 231351457 CGTTTACATTCCCGTAGTGTG 59 NA Rattus norvegicus 81 Top3b ENSRNOG00000001845 ENSRNOT00000002524 3 1 1 80 11 88352817 88352837 TATCCCGAGAACTTTGACCTG 60 88352631 88352776 CAACTGCTTTACCGAGTCTG 59 NA Rattus norvegicus 81 Ltbr ENSRNOG00000019264 ENSRNOT00000026184 1 1 1 89 4 157824273 157825218 ATCCAGAGGGAGAAGAATCTC 59 157824204 157824222 CAGACATGGGTAGGAGTGG 59 NA Rattus norvegicus 81 Tmem178a ENSRNOG00000007907 ENSRNOT00000010927 2 1 1 80 6 3657749 3700245 TCATCCTGAAAGGTATTGCAC 58 3700287 3700305 AAGGAATGTTCCGTAAGCG 58 NA Rattus norvegicus 81 Ube2b ENSRNOG00000005064 ENSRNOT00000016742 3 1 1 83 10 37452186 37454388 TTCAAGCGATTGCAAGAGG 59 37452121 37452140 TATAACTGCGTTCCACTGCA 60 NA Rattus norvegicus 81 Fchsd1 ENSRNOG00000039415 ENSRNOT00000026381 1 1 1 80 18 31102302 31102400 TTTGGCTATCAGGCAGGAC 60 31102240 31102260 AGCATCTCCTTCCTCTATGAC 59 NA Rattus norvegicus 81 LOC103691445 ENSRNOG00000054595 ENSRNOT00000090178 3 1 1 60 2 35531501 35531521 AGCATTCATGTATCTACAGCC 58 35531461 35531481 TGATGATACTTTCCCTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 3 2 2 80 4 78322449 78322468 TGAACTACAATGGAAGCCCA 59 78322510 78325811 TTGTATTCCAAGCTCATGGC 59 NA InUTR Rattus norvegicus 81 RGD1311946 ENSRNOG00000025245 ENSRNOT00000034240 3 1 1 60 1 218951896 218951916 TCTGTGCCCTTATCTAGAAGC 59 218951935 218952653 TATTAGTGACTAAGTGTCGTGG 58 NA DesignRelaxed Rattus norvegicus 81 RGD1307235 ENSRNOG00000015508 ENSRNOT00000020892 3 1 1 80 13 25687525 25689876 AGCCCAATAGGAAATTGTCAC 59 25689916 25689936 ATCCTAACCGACTATCTGCTG 59 NA Rattus norvegicus 81 Palm2 ENSRNOG00000025558 ENSRNOT00000030913 1 1 1 80 5 74766741 74767758 GACTTGCAGAAGAGTTTCTCC 59 74786181 74786202 TCCTGTTTGTTTGTCTTTCTCC 59 NA Rattus norvegicus 81 Mir103-1 ENSRNOG00000035503 ENSRNOT00000053626 2 1 1 60 10 20606726 20606744 CTCGGCTTCTTTACAGTGC 59 20606768 20606786 ATAGCCCTGTACAATGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp4f37 ENSRNOG00000048979 ENSRNOT00000067074 2 1 1 80 7 14823825 14823846 TCTTGGAGTCCAAGACTAAGTC 59 14823885 14824565 TTCCATGTTCATCCTTAGCCA 60 NA Rattus norvegicus 81 Pax9 ENSRNOG00000008826 ENSRNOT00000011802 3 1 1 81 6 77608968 77608986 CGTACCCTCTGTGAGTTCC 60 77609029 77609051 CTGCTTATAGGACGTACCCTG 60 NA Rattus norvegicus 81 Foxa1 ENSRNOG00000009284 ENSRNOT00000009940 1 1 1 66 6 78549554 78549572 ACTGGAACAGCTACTACGC 60 78547257 78547275 GAGTTCATGTTGCTGACCG 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r90 ENSRNOG00000058136 ENSRNOT00000083168 3 1 1 81 4 121676552 121679165 CACTCTGTTGTCTACTTACCC 58 121676491 121676509 TTGCTTGTCAACAACTCCA 58 NA InUTR Rattus norvegicus 81 Cd200 ENSRNOG00000002141 ENSRNOT00000058453 3 1 1 86 11 60380239 60380257 GAGACCTTTCTGCCATCTG 58 60380307 60383255 GTCACCACTTCCACTTGAG 58 NA Rattus norvegicus 81 Prdx4 ENSRNOG00000003763 ENSRNOT00000005014 2 1 1 80 X 43498021 43501009 CTAAGCAAAGCCAAGATTTCC 58 43501049 43501069 TTTGAGCTCCTTGAATTCTCC 58 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600,ENSRNOT00000084258 1 2 2 81 6 83423252 83425765 CACCCTTGTTTACAGAATGATACC 60 83425800 83425823 CAAGTCATACATAGTTCCAGAAGC 60 NA Rattus norvegicus 81 Olr1304 ENSRNOG00000039239 ENSRNOT00000060095 1 1 1 60 8 43234491 43234509 AGATCCAAAGCCTTCAGCA 59 43234449 43234469 ATCCAAAGAAGACAGCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir743a ENSRNOG00000041236 ENSRNOT00000062989 1 1 1 60 X 151252874 151252893 TATTCAGATTGGTGCCTGTC 58 151252833 151252851 TCCACTCTACCCAGTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr818 ENSRNOG00000049389 ENSRNOT00000007229 2 1 1 60 4 72603441 72603460 TTGTTGACATTGCCTATGCC 59 72603480 72603501 GGATCTAAGAGGTTTACCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1a ENSRNOG00000005916 ENSRNOT00000008238 1 1 1 80 6 94474423 94474442 AGATCCAGACTTGAAGTCAC 57 94474482 94476818 TCGACTTCCCTTATACAAACAG 58 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849 2 2 3 154 7 18564607 18564625 GTTTATCACACCACTGGCC 59 18559933 18564489 GGAAAGAGACCAGTGTCCA 59 NA Rattus norvegicus 81 Aagab ENSRNOG00000008424 ENSRNOT00000011385 2 1 1 80 8 68540000 68540019 GAGTGGTGCATCAAACATGG 60 68540062 68542080 TTCAGGGAAGTCATCGTCC 59 NA Rattus norvegicus 81 Cxadrl1 ENSRNOG00000029029 ENSRNOT00000051939 1 1 1 80 8 106845405 106845423 CACCTACCAGTGCAAAGTG 59 106842821 106845366 CTCCCAGTGATATCAATAACTGTC 59 NA Rattus norvegicus 81 Rbbp7 ENSRNOG00000005157 ENSRNOT00000066676 1 1 1 80 X 33664564 33664582 CTGGTTATGACCCATGCTC 58 33657225 33664523 ATCCTTTCCTTCTGGTTTAGTC 58 NA Rattus norvegicus 81 Hdhd3 ENSRNOG00000015195 ENSRNOT00000020380 3 1 1 189 5 78359254 78361537 AGGATCTTGTGCTGAAAGAC 58 78359084 78359102 GTCAGTAGACGCATCTGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 1 1 1 65 8 38154249 38154267 ATCTTGCTGCTCCTACTGG 59 38153337 38154220 CTCAAAGCACACCAAAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef5 ENSRNOG00000005506 ENSRNOT00000044780 2 1 1 80 4 72722650 72722669 GAGAAGAAACCAAAGGAGGG 58 72722711 72722936 CTGATAAAGCAGCTGAGAGG 58 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481,ENSRNOT00000021040 2 2 2 80 14 104499191 104499370 ACAGCCAAGGAATTTGCAG 59 104499412 104499432 AGACTGTTCTACATTCGTTGC 59 NA Rattus norvegicus 81 Olr127 ENSRNOG00000034039 ENSRNOT00000045417 1 1 1 60 1 168905125 168905147 CTACAGAACTACCAATATCTCCC 58 168905087 168905106 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102546937 ENSRNOG00000049468 ENSRNOT00000044160 3 1 1 80 19 28594325 28615773 AGATCCATGAAGAACAGGGTC 60 28594265 28594283 GACCACCTCCTCCATTCTC 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 3 2 2 80 15 41316184 41316202 TGGCATTCAAGGTCCTACC 59 41315816 41316142 TTGCTTTACAGGACAAGTGAC 59 NA Rattus norvegicus 81 Rab38 ENSRNOG00000016769 ENSRNOT00000022538 2 1 1 115 1 152072857 152072876 AAACTTCTCCTCCCACTACC 59 152072954 152107803 TTTCTTGACCTGCGATGTC 58 NA Rattus norvegicus 81 Rab38 ENSRNOG00000016769 ENSRNOT00000022538 3 1 1 116 1 152072857 152072876 AAACTTCTCCTCCCACTACC 59 152072954 152107804 CTTTCTTGACCTGCGATGTC 59 NA Rattus norvegicus 81 Pcnp ENSRNOG00000028411 ENSRNOT00000039997 2 1 1 80 11 47061732 47061754 GTTTGGATTTGCCATAGGTAGTC 60 47061793 47064057 TCCTTAGGCTTACTTGCTCC 59 NA Rattus norvegicus 81 AABR07026059.1 ENSRNOG00000031959 ENSRNOT00000058884 2 1 1 89 16 61928567 61934379 GCCCAGAAGTATCTTTAGTTAGAC 59 61934427 61934445 CTCTTCTAGCTTTGCCGTG 59 NA Rattus norvegicus 81 RGD1563323 ENSRNOG00000026579 ENSRNOT00000036769 3 1 1 83 1 219894211 219894229 AGGGCAGAGAATGAACCTG 59 219893334 219894167 TTGTGGTTTACTGACATAGTGC 59 NA Rattus norvegicus 81 Upp1 ENSRNOG00000004972 ENSRNOT00000006765 2 1 1 80 14 89331057 89332481 TTCAGGAGGGATAGGTCTG 58 89332524 89332543 TCAAACTCTGGTTTGAAGCA 58 NA Rattus norvegicus 81 Ibtk ENSRNOG00000027728 ENSRNOT00000056930 1 1 1 80 8 93372832 93374920 TGTAATGTACCCAGACAGATACAG 60 93372775 93372793 TGTATGAAACCTGCCTGCT 59 NA Rattus norvegicus 81 LOC100910667 ENSRNOG00000049512 ENSRNOT00000072050 3 1 1 60 8 43082320 43082341 GTTCACTTAACGTTATTGTCCC 58 43082281 43082301 GCCATGATGAAGATGTAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a4 ENSRNOG00000003476 ENSRNOT00000004717 2 1 1 80 10 63167664 63168902 CAACAACTGTTACCAAGATGC 58 63167604 63167622 GTGAAGATGACGAAGCCAG 59 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 2 2 2 82 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054947 TAGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048916 ENSRNOT00000075829 2 1 1 60 8 3639250 3639273 CCAAACTATGACTATCAGTTCCAG 59 3639292 3639310 GGAAGCTCTGACCTTATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc80 ENSRNOG00000002052 ENSRNOT00000059735 1 1 1 80 11 60669152 60669173 TCTCTGTGGTTACTATCTTTGG 57 60656464 60669114 TGGGTTTCTCATTATCTAGCTG 58 NA Rattus norvegicus 81 Nhlrc3 ENSRNOG00000010843 ENSRNOT00000014562 2 1 1 80 2 142684748 142684767 CCATGGTATGTTTGTCTCCG 59 142681840 142684705 GTATGGCCATAGGGTCCAC 60 NA Rattus norvegicus 81 Phyhip ENSRNOG00000049071 ENSRNOT00000074912 1 1 1 60 15 52156875 52156895 CCATCACAAGGAGTACTTCCA 60 52158271 52158292 GTAAGGCTGTAGTACATTCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0251.2 ENSRNOG00000051328 ENSRNOT00000077023 1 1 1 60 15 21189546 21189565 AGATGTCCTCAATCAACTCC 57 21189505 21189525 GGCTGTAATGTCTTCAAATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a3 ENSRNOG00000006204 ENSRNOT00000008126 3 1 1 80 6 26646931 26646951 CACAGTGACTACCACATTGAG 59 26646991 26647507 AAAGGCCATTATCATGTTGGC 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 2 3 3 80 15 45503370 45505682 GATGGGAAGGAAGTATGTACTC 58 45503311 45503329 TTGTTGCTGATGGTCTGTG 58 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 3 2 2 80 20 7772650 7772668 CTTCGAAGATGGTCAGCCT 60 7772712 7774763 GGGTCATAGCCCTCTTTGG 60 NA Rattus norvegicus 81 Smagp ENSRNOG00000048932 ENSRNOT00000073536 2 1 1 88 7 142245607 142246226 CTCATTGCAGTTGTTATAACCG 58 142245540 142245561 CTGCCTTTATTCTTGTACAGGT 59 NA Rattus norvegicus 81 Rn60_20_0014.2 ENSRNOG00000061377 ENSRNOT00000085148 3 1 1 60 20 1334933 1334951 GTCATGGTGGAACTTGCTG 59 1334891 1334912 TGATAACTACTGGCAACTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 2 2 2 81 6 102357187 102363480 CTAAGTGGAAGTCATTTCAGTGAC 60 102357129 102357148 ATAGCCGTCTGGCTATTGTC 60 NA Rattus norvegicus 81 Acvr1c ENSRNOG00000004828 ENSRNOT00000059280 2 1 1 80 3 44278907 44278925 CGAGCTGACATCTATTCGG 58 44277507 44278865 GTACTCTTCAACAAGTCCTCC 58 NA Rattus norvegicus 81 Acvr1c ENSRNOG00000004828 ENSRNOT00000059280 3 1 1 80 3 44278905 44278924 GAGCTGACATCTATTCGGTG 58 44277506 44278864 GGTACTCTTCAACAAGTCCTC 58 NA Rattus norvegicus 81 Olr1711-ps ENSRNOG00000047164 ENSRNOT00000074773 2 1 1 60 20 1217043 1217066 CTCCTATGTCCAAATATTCTCCAC 59 1217084 1217103 CTTAGACCTCCTTTCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Socs2 ENSRNOG00000008965 ENSRNOT00000011948 3 1 1 82 7 36497162 36498869 AGTCAAACAGGATGGTACTG 57 36497099 36497117 AAGAAAGTTCCTTCTGGCG 58 NA Rattus norvegicus 81 Il17d ENSRNOG00000051120 ENSRNOT00000091953 1 1 1 107 15 37799612 37806843 CATTTGCCCACATGATTTCCT 60 37806912 37806930 AGTCCTCCTCACCGTAGAG 60 NA Rattus norvegicus 81 Csrnp3 ENSRNOG00000005359 ENSRNOT00000007197 2 1 1 115 3 51918866 51995358 AGATCTCACGGTACATGTGAC 60 51995435 51995453 ACTTCGTCATCCGATTCCC 60 NA Rattus norvegicus 81 Glipr2 ENSRNOG00000014838 ENSRNOT00000019916 1 1 1 82 5 59438237 59438255 TCTCAAACACAGCCCAGAG 60 59438299 59439945 CTTCCTTTCCTGTCTGATCGT 60 NA Rattus norvegicus 81 Ndufs4 ENSRNOG00000011383 ENSRNOT00000015217 1 1 1 80 2 46397249 46438818 TGAGAAACTGGATGTTACTCCT 59 46397190 46397210 GCAGGAACAAAGATTCTGACC 60 NA Rattus norvegicus 81 Olr1186 ENSRNOG00000030613 ENSRNOT00000040199 2 1 1 60 8 20980769 20980790 CTGAGGAACAAAGATGTGAAGG 59 20980807 20980829 AGGGACATGAATACACTCTAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910256 ENSRNOG00000050950 ENSRNOT00000072279 1 1 1 60 8 42871611 42871629 GCACGATCATCCTGATCCT 59 42871569 42871588 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 3 2 2 80 17 15686126 15686144 AGGACTACTCTGAGCTGGA 59 15682723 15686083 CAAATTCCACCTGGTTCTGC 60 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894,ENSRNOT00000073048 1 2 2 80 9 10163774 10163792 GAGTTGTACGGCTTGTCAG 59 10162892 10163731 CTTCCCAGAGCTCAGTATCC 59 NA Rattus norvegicus 81 Mir144 ENSRNOG00000035647 ENSRNOT00000053770 2 1 1 69 10 65291418 65291441 TGGCTGGGATATCATCATATACTG 60 65291372 65291396 CCAGACTAGTACATCATCTATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam4 ENSRNOG00000042078 ENSRNOT00000067741 2 1 1 88 8 22048070 22048202 AGGATCACTGCTTTCAAACG 59 22048251 22048271 GTCACATAGCATCTCAGAGTG 58 NA Rattus norvegicus 81 Icam4 ENSRNOG00000042078 ENSRNOT00000067741 3 1 1 89 8 22048072 22048203 GATCACTGCTTTCAAACGG 57 22048255 22048274 TGTGTCACATAGCATCTCAG 58 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 1 4 4 80 10 82091135 82091156 CTGTGATAGTCTTGCTGATACC 59 82089393 82091097 TGAACTTCATTTGCTGTACCTG 59 NA Rattus norvegicus 81 Inpp5a ENSRNOG00000017635 ENSRNOT00000054890 2 1 1 80 1 211900184 211900297 ACAATGACCGTAAGGTCGT 59 211900341 211900359 CATTGTTGTCCCGGAAGAC 59 NA Rattus norvegicus 81 Nfkbid ENSRNOG00000025111 ENSRNOT00000029719 2 1 1 81 1 88888019 88888127 AGACTTCGAAGGCCTTACC 59 88888171 88888190 CCTCGGACACATAGTAGGTG 59 NA Rattus norvegicus 81 Rasgrp2 ENSRNOG00000021098 ENSRNOT00000028646 2 1 1 80 1 221775223 221775242 CATGTTTCTCATGATGCACC 58 221775284 221775762 CGGGATTGCTGATAGAAGTG 59 NA Rattus norvegicus 81 RGD1561661 ENSRNOG00000023094 ENSRNOT00000030170 1 1 1 60 X 13442068 13442088 AAGATTAGCGACTACCTGACC 59 13442110 13442128 CACTCAGGCTTTCCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000075999,ENSRNOT00000007958 3 2 2 83 7 115968007 115968025 GACTGCGTCAAGATCACAC 59 115967550 115967962 GAAAGGAAACACTATCTCCCG 59 NA Rattus norvegicus 81 Doxl1 ENSRNOG00000023612 ENSRNOT00000032300 2 1 1 85 4 78566724 78566956 AAGATAAGGATTTGGTGGCC 58 78567003 78567022 CTTAGGTGTGGTCATGTTGG 59 NA Rattus norvegicus 81 Olr1020 ENSRNOG00000049559 ENSRNOT00000040812 1 1 1 60 7 7311071 7311090 GCGGAATTTCTCTTTCTTGG 58 7311030 7311051 CATTAAGAACCGTGGAATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052762.1 ENSRNOG00000048599 ENSRNOT00000071292 3 1 1 81 3 74318856 74318875 TATCGTTGCTTCCTATGCTG 58 74318919 74318940 ATTGGACTGGAACAACAGG 58 NA Rattus norvegicus 81 Spag5 ENSRNOG00000011777 ENSRNOT00000015651 1 1 1 80 10 65579017 65583035 GAGAACAAGGCAGAATCAGAC 59 65583077 65583095 GCTATCACTGGAAGGAGGG 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 1 1 2 81 12 9990041 9990059 AGGACTCACAAGACTTGGG 59 9988108 9988425 ACAATCATTGCGCTCTTGC 60 NA Rattus norvegicus 81 AC106663.1 ENSRNOG00000054513 ENSRNOT00000077428 1 1 1 80 14 86659142 86659419 ATATTCAGAACTCAGACTACGAGG 60 86659458 86659476 GTAGGTCAGGCTTCACAGG 60 NA Rattus norvegicus 81 AC106663.1 ENSRNOG00000054513 ENSRNOT00000077428 3 1 1 80 14 86653138 86653363 GTTTCACTCCTGGGTATGC 58 86653407 86653425 GTGTGAAGTCAGTTGAGGG 58 NA Rattus norvegicus 81 Slitrk5 ENSRNOG00000009649 ENSRNOT00000012785 1 1 1 60 15 96823590 96823609 TCAAAGTGGGAGTGTTAGTG 58 96823631 96823650 GTCTCTGCGAATTTCTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcr5 ENSRNOG00000012430 ENSRNOT00000016580 3 1 1 80 8 48838215 48850454 CATGGATGAGCTGTACAAGG 59 48838154 48838176 GTAGAACAGAAGATACTGTCCTG 58 NA Rattus norvegicus 81 LOC689899 ENSRNOG00000030614 ENSRNOT00000040647 3 1 1 60 14 24129976 24129996 AATACTCTGATACGGCCTGAC 60 24130018 24130036 CATAATCAGGAGCCAAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eno2 ENSRNOG00000013141 ENSRNOT00000005601 1 1 1 80 4 157288038 157288539 CGGAACTATCCTGTGGTCTC 60 157287977 157287996 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 Skor1 ENSRNOG00000013959 ENSRNOT00000018756 1 1 1 80 8 68031894 68031915 GATCAAATGAAGAGGGAATTGG 58 68031333 68031856 TTCGTTACACAAGGTATCTCTG 58 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000066008 3 1 3 81 11 45888333 45888351 ACCACCGACTACAAGAAGC 60 45899629 45900826 CAATGATGGATCTTTCTCAGGC 60 NA Rattus norvegicus 81 LOC691422 ENSRNOG00000007076 ENSRNOT00000009270 3 1 1 60 7 15852383 15852403 CCAGATAGATGAAACAACCCA 58 15852343 15852361 TTCTCCACACTGCTTACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1734 ENSRNOG00000058776 ENSRNOT00000047035 1 1 1 60 20 1737150 1737170 GTTCTCTTCACCTACATCCGT 60 1737190 1737210 CAATGATTCTGTCCTGATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 3 1 2 69 1 267607690 267607708 ACAGCATGAGGTTCTGTCC 60 267607741 267608849 AATCGTCGGATTCCCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Jrkl ENSRNOG00000047133 ENSRNOT00000072420 3 1 1 60 8 11887580 11887601 AAGAGAAAGTCTATGAAGCCGT 60 11887541 11887562 ACCATTCTAACATTGCTCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H1fnt ENSRNOG00000029545 ENSRNOT00000046402 3 1 1 60 7 139871882 139871900 CAGGAGTATGTCAGGACCA 58 139871840 139871858 CGATACGCATCTGTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564698 ENSRNOG00000030106 ENSRNOT00000040278 1 1 1 60 10 19715595 19715615 GCTTGGAGACATTTCTACTGG 59 19715555 19715574 GGTAATCTCGGAGGTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911398 ENSRNOG00000045616 ENSRNOT00000075040 1 1 1 60 10 44331513 44331531 TTGTGCTGATACCCTTCCT 58 44331553 44331573 TATACAACAACCAACACCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1736 ENSRNOG00000061930 ENSRNOT00000075084 3 1 1 60 20 1765248 1765267 TCTGTCATCATGAATCGCCA 60 1765287 1765308 AGCCTATGATCCAGATAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 2 1 1 86 1 197677236 197677843 ACATCATCCCTCCTCAGGT 60 197677893 197677911 TATGCATGAAGTCCAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07057961.1 ENSRNOG00000048334 ENSRNOT00000073584 2 1 1 60 7 96195955 96195976 AACTATGAAAGCCAGAAGATCC 58 96195995 96196015 GCATTTGTGTTCTCTTAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000088763 3 1 2 60 20 1815245 1815265 CTTGCTCATTGCTTTCTTTCC 59 1815205 1815228 ATCCCACTAGTCTGAGTATAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534,ENSRNOT00000056251,ENSRNOT00000056250 2 3 3 80 9 121855035 121856488 CTGCTCAGATTGCTGATGG 59 121856530 121856550 CAAGAATATTAGCAGCTCGGA 58 NA Rattus norvegicus 81 Olr1460 ENSRNOG00000046759 ENSRNOT00000040720 2 1 1 60 10 44805338 44805357 TTCTACTTGCTCCTCTCACC 59 44805380 44805398 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rictor ENSRNOG00000011341 ENSRNOT00000029565 1 1 1 80 2 56095829 56095847 CTGCATTGAAATCCTGGGT 58 56095888 56099497 TACGGAATATCTTGAAGGTCAG 58 NA Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 3 2 2 80 3 5561823 5562850 TGTGGATGATCATGAACGC 58 5562894 5562912 CTGTGTTTGCAAACTCCAC 58 NA Rattus norvegicus 81 Socs1 ENSRNOG00000002568 ENSRNOT00000003458 1 1 1 213 10 4957594 4957612 CTCCCACTCTGATTACCGG 59 4957789 4957807 GAAGTGCACACGAATGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfaip8l1 ENSRNOG00000045999 ENSRNOT00000074502 2 1 1 60 9 10897183 10897202 CCAGAAGAAAGTCCTCAGCA 60 10897142 10897161 GTCATCCACAAATACAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chad ENSRNOG00000003304 ENSRNOT00000004435 3 1 1 81 10 82293183 82294846 CAACCTGGAGAAGTTCTCAG 58 82294890 82294908 GTTCAGGCGATTGTTCTCC 59 NA Rattus norvegicus 81 Gpr62 ENSRNOG00000022567 ENSRNOT00000033018 2 1 1 97 8 115167417 115167435 TTTATCCTGGCGGTTCTCG 60 115167338 115167357 TAGAAGGCATCTTGCAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 2 1 1 88 14 107349706 107349824 GAAAGAACAAGTACCGCCA 58 107349876 107349894 GCTTTGAAGGATGGCACTG 60 NA DesignNoJunction Rattus norvegicus 81 Shisa2 ENSRNOG00000012521 ENSRNOT00000016826 2 1 1 60 15 39949066 39949086 GAACCATGAACAATGTGTACG 58 39949106 39949126 TGCTGACAGTTGAGTACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1352 ENSRNOG00000037404 ENSRNOT00000056602 3 1 1 60 9 99776984 99777004 GCTCTTTACTGTCTTCCTCGT 60 99777026 99777044 GATCATGGTGAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000086507 3 1 2 60 3 66416371 66416392 CTGCACTTATTTCTACAGAGGG 59 66416332 66416351 TCAGCTTAACTGTGTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1a ENSRNOG00000052707 ENSRNOT00000083448 3 1 1 80 19 25623789 25623807 TGATCTACGGACACTGAGG 58 25623850 25627652 AGGACGACTTGTAAACTTGG 58 NA Rattus norvegicus 81 Slc46a3 ENSRNOG00000000937 ENSRNOT00000001243 2 1 1 80 12 8726431 8726451 TTTACCTCCAGTAGCAATGTC 58 8726492 8733015 TTTCTGAACTTCCTCCTGGA 58 NA Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000034289 2 1 2 80 6 95480929 95481766 GAGACTTCACGGAGACCAG 60 95480867 95480887 AGACAAGGATTAGCTGGACAC 60 NA Rattus norvegicus 81 Cst5 ENSRNOG00000005545 ENSRNOT00000007336 3 1 1 112 3 144569518 144569806 AAGGAGCACTTAGCACTCC 59 144569882 144569900 ATTAGTACTGGCTGCAGGG 59 NA Rattus norvegicus 81 Ubr5 ENSRNOG00000006816 ENSRNOT00000009115 2 1 1 80 7 76820819 76820838 TGGAGCACTGTCAGTATAGG 59 76820675 76820776 GCATGTCTGAATCGTCAGG 59 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745,ENSRNOT00000059510 3 2 2 80 17 43253320 43253339 GGAGCTCAAGTGTTAGAAGG 58 43253379 43253924 AGATTCTAAACCGTTGTCAGAG 58 NA Rattus norvegicus 81 LOC100910445 ENSRNOG00000046411 ENSRNOT00000072355 3 1 1 60 8 43007195 43007215 TGTACTTCTTCCTCAGCAGTC 60 43007155 43007178 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mln ENSRNOG00000042186 ENSRNOT00000067667 2 1 1 60 20 6571708 6571728 CAGATTGAAGCTTTCCTTACC 57 6567174 6571686 CAGTCAACTGCAGTCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Serpine3 ENSRNOG00000009814 ENSRNOT00000051307 2 1 1 85 15 45834491 45834509 GAGATCCTGCAGTTTGCAG 59 45834558 45837363 CTCACTCTTGGGTCTTGCA 60 NA Rattus norvegicus 81 Dapp1 ENSRNOG00000010575 ENSRNOT00000014139 3 1 1 80 2 243182579 243183715 TTTCAAAGACCAGATGTCTCCA 60 243182520 243182541 TGCGAGTAATCAAATTGGACAG 59 NA Rattus norvegicus 81 Bcl2l1-ps1 ENSRNOG00000018503 ENSRNOT00000024954 1 1 1 60 1 167765188 167765207 CCAGGGACAGCATATCAGAG 60 167765147 167765166 CATTGTTCCCGTAGAGATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Loxl1 ENSRNOG00000008680 ENSRNOT00000034300 3 1 1 82 8 63070122 63072126 TACATCCTCAAGGTGCACG 60 63070058 63070076 TGGATGTTGCATCTCACCA 59 NA Rattus norvegicus 81 Emc2 ENSRNOG00000005123 ENSRNOT00000006890 1 1 1 80 7 82368728 82377031 GGCTTATCAGTTTGCAGGT 58 82377074 82377093 TGCAATGTCTCCAACATGTC 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417,ENSRNOT00000087094 3 2 2 80 12 13109934 13109953 GAAGCTGAAGGAGAAGAAGC 59 13109995 13110261 TATTTGACAGCACCGATCTC 58 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 3 2 4 133 3 57584412 57607548 AACATGTGGGATCACATGC 59 57572288 57572307 TCCCAGTATTTGTTAGCAGC 58 NA Rattus norvegicus 81 Cby3 ENSRNOG00000003395 ENSRNOT00000004517 2 1 1 91 10 35858020 35858038 TAATCCAGCAATGGGACCA 59 35859188 35859206 CTGGAATGATGAAGGCGAG 58 NA DesignNoJunction Rattus norvegicus 81 Sarnp ENSRNOG00000030520 ENSRNOT00000009155 1 1 1 80 7 3275165 3295348 CTCTTCCATCTCTAGAAAGTCTG 58 3295387 3295406 GCTGAACTTGTCACAATTCC 58 NA Rattus norvegicus 81 Adam8 ENSRNOG00000017897 ENSRNOT00000024369 1 1 1 80 1 212326494 212326723 CATGTGGACAAGCTTTATCG 57 212326433 212326454 GTAGAATTTGTCCTTGTTCCAG 57 NA Rattus norvegicus 81 Coq4 ENSRNOG00000026691 ENSRNOT00000038602 1 1 1 80 3 8356111 8356130 ATCCAGAGATACCGTGAGGT 60 8356173 8356666 TACCACAACTTCTCCGAGC 59 NA Rattus norvegicus 81 Hcn3 ENSRNOG00000020444 ENSRNOT00000027785 2 1 1 80 2 188464499 188464517 AAGATCCTTAGCCTGCTGC 60 188463069 188464457 CATGTGAAAGATCTCCTCCCA 60 NA Rattus norvegicus 81 RGD1560917 ENSRNOG00000034128 ENSRNOT00000043351 2 1 1 60 8 91820942 91820961 GTTCCAGAATTTGTGGTCCC 59 91820981 91821002 GGTAATTAACGTAGGGCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtif2 ENSRNOG00000004161 ENSRNOT00000005834 3 1 1 80 14 113958086 113958104 CCTGGCTTATGATGTGGTG 58 113958147 113960021 AGGTTCTTTCCTGTTAGTGC 58 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458,ENSRNOT00000083976 3 2 2 80 12 13544440 13549194 GGATCTGGAAAGTCAGAGCT 59 13549236 13549255 GAGCACTTTCTCCAGTTCAC 59 NA Rattus norvegicus 81 Taar4 ENSRNOG00000029877 ENSRNOT00000047810 1 1 1 60 1 22558878 22558899 TCATATACGGCATGTTCTATCC 58 22558839 22558858 GTCCCTGTGACTATCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttnbp2nl ENSRNOG00000014479 ENSRNOT00000019680 2 1 1 80 2 207505460 207505478 CAGTGCAAGAACATGCAGG 60 207501466 207505417 AAGATCCAGGATCACCTTGC 60 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 3 2 2 80 7 116703257 116707140 GGCAGAAGGAAATGACAGC 59 116703195 116703213 AGTGCCTATGGATCTCCGA 60 NA Rattus norvegicus 81 Olr742 ENSRNOG00000052629 ENSRNOT00000085154 2 1 1 60 3 79132884 79132902 TATGAGACCTTCCTCCACC 58 79132842 79132861 GATGACCGTGTAGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352,ENSRNOT00000088802 2 2 2 80 X 37336212 37336801 AGAATTAACAGGACGAAGAGG 58 37336843 37336861 CCGCCATAGAAGTTCTTGG 58 NA Rattus norvegicus 81 Ccna1 ENSRNOG00000014052 ENSRNOT00000040002 2 1 1 80 2 144462273 144462291 TTCCTGCATGTCTGTTCTG 58 144461125 144462231 ATCTCTTCGTATTTCGAAGCC 58 NA Rattus norvegicus 81 Serpina3c ENSRNOG00000010410 ENSRNOT00000013896 3 1 1 81 6 128000906 128000925 AAGATCGCAGAACTGTTCTC 58 127999067 128000865 TCCATTTGCCTTTAAAGAGGAG 59 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408,ENSRNOT00000084180 3 2 2 106 17 45516406 45517535 CTTTACCTTCTTGAAGCGCTC 60 45517603 45517621 CAAAGTTCCAGCGGATGTC 59 NA Rattus norvegicus 81 Tmc3 ENSRNOG00000025088 ENSRNOT00000037996 3 1 1 80 1 145744091 145744110 CTGATGTACCTGAGGAGCTG 60 145744152 145746519 GTTGTTGGATCTGGAAGCTC 59 NA Rattus norvegicus 81 Camkk1 ENSRNOG00000018242 ENSRNOT00000025009 3 1 1 80 10 59604111 59604129 GTGGTAGAGGTGACTGAGG 59 59604172 59604614 AGACTTGACCAGGATCACAG 59 NA Rattus norvegicus 81 Smim7 ENSRNOG00000042037 ENSRNOT00000066121 3 1 1 83 16 18977558 18977577 ACTGAGCCTGAGGTATTTCC 59 18977623 18978628 CAAGAGCCGAACAGTACGA 60 NA Rattus norvegicus 81 Gmppb ENSRNOG00000037229 ENSRNOT00000026854 2 1 1 81 8 116827159 116827177 GTGATCCTAGCAGTGAGCT 59 116827222 116827327 AGATTCGGATTCCAAGCCT 59 NA Rattus norvegicus 81 Dmkn ENSRNOG00000055934 ENSRNOT00000084799 3 1 1 82 1 89224115 89224134 CTTACTCTACTTCCGCAGAC 58 89224727 89226338 GATCTGAGCCCTCAATCTG 57 NA Rattus norvegicus 81 Nr3c2 ENSRNOG00000034007 ENSRNOT00000052018 3 1 1 80 19 34750986 34751004 CGGTGACCTGTCATCTAGG 59 34582117 34750944 CGTAAAGTAGAGCTTGACACG 59 NA Rattus norvegicus 81 RGD1565410 ENSRNOG00000037375 ENSRNOT00000082405 1 1 1 80 7 116501812 116503572 AAGCTGTAAAGGACTCTGTG 58 116501751 116501771 CAGTTCTTTGAGGAAACTTGG 57 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683,ENSRNOT00000064715 1 2 2 80 2 188527627 188527645 GAGCTATTCTGCTGGTCTG 58 188526664 188527585 AAATCTGGTATAGGTCAGCAC 58 NA Rattus norvegicus 81 Rn5s ENSRNOG00000050259 ENSRNOT00000073261 1 1 1 60 12 1510472 1510490 CCCGATCTCGTCTGATCTC 59 1510430 1510448 TCCCATCCACGTACTAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam117b ENSRNOG00000022066 ENSRNOT00000031261 1 1 1 80 9 66755547 66758475 CAGAACAGCTTAAAGAGATTGC 58 66758515 66758534 CTTTATCTCGATGGTGACGG 58 NA Rattus norvegicus 81 Dnajc17 ENSRNOG00000012368 ENSRNOT00000016692 2 1 1 80 3 110988558 110991072 GAGGCTGAGAGGAAGAACC 60 110988141 110988159 TCCTCCTTCTTGCACTTCC 59 NA Rattus norvegicus 81 Tm4sf1 ENSRNOG00000015812 ENSRNOT00000021535 3 1 1 80 2 147385947 147389823 GAGGGACAGTACCTTCTGG 59 147385885 147385903 TAGAGTCACATGCCACTCC 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000087547,ENSRNOT00000051249,ENSRNOT00000087919 1 4 4 80 X 54235617 54237935 ATGCTGAAGAAAGTGAAATCCG 60 54235558 54235579 GAGATTGAGTTGTAACCCAACC 59 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000080041 2 1 2 108 1 211256503 211256527 CAGCTTCCGTCTCTATTTATAATGG 60 211251541 211256438 TTCCTCAGACTGTCACAGTG 59 NA Rattus norvegicus 81 Wwtr1 ENSRNOG00000016617 ENSRNOT00000022507 1 1 1 81 2 147621591 147692130 GGCCAGAGATATTTCCTTAATCAC 60 147621533 147621554 GATTCAGAGGCTGATTCATCAC 59 NA Rattus norvegicus 81 Cfap52 ENSRNOG00000037718 ENSRNOT00000005066 1 1 1 81 10 54486431 54491575 AATTCAGCTTGGGAGTGTC 58 54486368 54486386 AAGATCAACAAGCCAGCTC 58 NA Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 3 1 1 121 2 192283345 192288480 CAAAGTGCCCTGAACACTG 59 192283242 192283261 TTCTGGACACTTTGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc3a2 ENSRNOG00000018487 ENSRNOT00000025196 1 1 1 80 1 224907277 224907980 CTTCCTGGACAGCCTATGG 60 224907215 224907234 GAGGCTTACAGGACTTGAGG 60 NA Rattus norvegicus 81 Arl14epl ENSRNOG00000025590 ENSRNOT00000035656 2 1 1 82 18 40983598 40983616 ACTCTACTCAAGAGGAGCG 58 40983661 40985992 TTCTATCTGTTGCAGTTGCT 58 NA Rattus norvegicus 81 Gzmk ENSRNOG00000010661 ENSRNOT00000014319 3 1 1 90 2 45069371 45070285 ATTCCTGCAAGGGTGACTC 60 45069299 45069320 TTGGAGATGCCACATTTATAGC 59 NA Rattus norvegicus 81 Zfp483 ENSRNOG00000014975 ENSRNOT00000020207 2 1 1 80 5 76092627 76092646 CTGAGAGTAGTGTGGAGGTG 59 76092687 76094671 CCTGAGTGTTACGATCTTCCT 59 NA Rattus norvegicus 81 Prkx ENSRNOG00000060168 ENSRNOT00000090932 1 1 1 80 X 45084020 45084359 GAGGAAACTTAAGCCACCC 58 45083958 45083977 TCACCCTCTGGATAAGTCTC 58 NA Rattus norvegicus 81 Il12a ENSRNOG00000009468 ENSRNOT00000012831 1 1 1 80 2 165081065 165081157 CCATCATAAGAGGGAGCTG 57 165081289 165081308 AGTCCTCATAGATGCTACCA 57 NA Rattus norvegicus 81 Tmed7 ENSRNOG00000003691 ENSRNOT00000004942 3 1 1 80 18 40583957 40583976 TTCCAAGTTGGAGAAGACCC 60 40581916 40583916 AACACAAGCAGATTCCATCTG 59 NA Rattus norvegicus 81 AABR07065656.8 ENSRNOG00000056760 ENSRNOT00000042118 1 1 1 60 6 138931001 138931019 CAAATGGACAGTCTGAGGT 57 138930665 138930978 AATTTGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065656.8 ENSRNOG00000056760 ENSRNOT00000042118 3 1 1 60 6 138930998 138931017 AATGGACAGTCTGAGGTCTG 59 138930663 138930978 GAAATTTGTGTCTGTTGCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Lenep ENSRNOG00000049513 ENSRNOT00000074920 3 1 1 91 2 188727474 188727493 GGTGTATCAAGGAACTGCTG 59 188727315 188727420 GGAGTCTTAGGGCTGAGTG 59 NA InUTR Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 3 5 5 80 12 52399676 52399858 GCTACAACTTCAGGTTTGCC 60 52399898 52399919 GAATCCCATAGGCTTTGATGAG 59 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000035411 1 1 2 80 2 181900841 181904571 CTGAGAAGTTTCACGAGACTG 59 181900781 181900800 ACACTAATCCCAAGACAGCT 59 NA Rattus norvegicus 81 LOC100912067 ENSRNOG00000047398 ENSRNOT00000071217 2 1 1 60 8 41911360 41911378 TTACGATCGCTATGTTGCC 58 41911401 41911420 CACAGGAGACATGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503,ENSRNOT00000058163 2 2 4 80 5 115215366 115215385 CAGTTTCAGGAGATGCTGAG 58 115210624 115215326 AAAGATATTGTAGAGCTGGCAC 59 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 2 2 3 80 1 101691073 101691091 CAGAGGAGGAATTGAAGCC 58 101691133 101692358 ACTTCTCATCCTTCTGTTCCT 59 NA Rattus norvegicus 81 Igsf23 ENSRNOG00000024630 ENSRNOT00000074412 1 1 1 80 1 80856576 80856595 GCACGTATCTGTGTATAGCC 58 80852689 80856533 CATTGTCTTGGCTCAAGGA 58 NA Rattus norvegicus 81 LOC100912340 ENSRNOG00000032383 ENSRNOT00000042974 2 1 1 60 8 42511858 42511877 CATTCTCACATCAATGGCCT 58 42511897 42511918 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osgin2 ENSRNOG00000009358 ENSRNOT00000012394 1 1 1 80 5 29670988 29671007 GAACAGCACCATTCTATCCC 59 29667791 29670949 CATAGAGCCTTCCATATTATGCC 59 NA Rattus norvegicus 81 Stk31 ENSRNOG00000057554 ENSRNOT00000086307 3 1 1 80 4 79114496 79115477 CTCTTAAAGGGCTATTCTGTGG 59 79115516 79115536 TCCACAAGCTCTATGATAGGA 58 NA Rattus norvegicus 81 Ccdc88b ENSRNOG00000024931 ENSRNOT00000067217 2 1 1 80 1 222108079 222108097 AACTGAGGTACGAGCTGAG 59 222107940 222108036 AGTGTGGCATTATTTCGCTC 59 NA Rattus norvegicus 81 LOC102551235 ENSRNOG00000027393 ENSRNOT00000036231 1 1 1 60 3 3700176 3700199 TAGAATACATCTCAGACAGAAGGG 59 3700139 3700158 TCAGAAGGTGTAGACCAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr410 ENSRNOG00000048499 ENSRNOT00000073976 3 1 1 60 3 16318980 16319001 GCTCAAACTTTCCATCTCAGAC 60 16319020 16319040 CACTGCTAATGTGAGGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rragc ENSRNOG00000017426 ENSRNOT00000023514 2 1 1 82 5 141575121 141576058 TCATTGATGCACAGGATGAC 58 141576102 141576121 GTCTGGGTTCACTTTGTAGG 58 NA Rattus norvegicus 81 Tmem114 ENSRNOG00000002768 ENSRNOT00000003749 3 1 1 129 10 7291424 7294984 TTTCTCTTCGGAGCCATGG 60 7295077 7295095 CAAAGCGTATGTCCACCTG 59 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 3 2 2 87 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494480 42494498 TCTTCGTACATGTGAGGGC 60 NA Rattus norvegicus 81 Pla1a ENSRNOG00000057153 ENSRNOT00000077727 2 1 1 80 11 64915872 64918526 CGGTCAAGATCACCATACCT 59 64918569 64918587 GGTTTATCTGGCAGTGTGG 59 NA Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 2 2 2 80 9 11180005 11180023 TGCACATGAATGATGGGAG 58 11174733 11179963 CAGATCCATATACTGTGAGCG 58 NA Rattus norvegicus 81 Utp6 ENSRNOG00000014209 ENSRNOT00000019044 2 1 1 80 10 67267816 67269450 TTTATGACGACCTTCAAGCTC 59 67267756 67267776 ACTCAATCTCTAACTCTCGCC 59 NA Rattus norvegicus 81 Dpm3 ENSRNOG00000029077 ENSRNOT00000045477 2 1 1 109 2 188583706 188583847 AGACAGAGCAAACATGACGA 60 188583918 188583937 GTAAAGGTAGCTCCAGACCC 60 NA InUTR Rattus norvegicus 81 LOC100362023 ENSRNOG00000042449 ENSRNOT00000063891 1 1 1 93 10 40057179 40057197 AGGGAGGTTATGGAGGAGG 60 40056555 40057124 CACAATGACAGATGAAGGGAC 59 NA InUTR Rattus norvegicus 81 LOC100362023 ENSRNOG00000042449 ENSRNOT00000063891 2 1 1 94 10 40057180 40057198 AAGGGAGGTTATGGAGGAG 58 40056555 40057123 CACAATGACAGATGAAGGGA 58 NA InUTR Rattus norvegicus 81 Enox1 ENSRNOG00000047817 ENSRNOT00000074868 3 1 1 80 15 59759464 59776753 ATCCTCACTCAATTTGAGCAG 58 59776795 59776813 AGCTTTCGAGAAATGGTCC 58 NA Rattus norvegicus 81 Lclat1 ENSRNOG00000034026 ENSRNOT00000043641 3 1 1 80 6 24430781 24430802 TATAAACCTGTCATGGTATCGC 58 24430843 24436097 GTTTCCAACAATGCCACAG 58 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 3 2 2 80 5 167173268 167173383 CCCATTCATTCAAGTGGGC 59 167173425 167173445 AAGATGTAGATGGTGGTGAGG 59 NA Rattus norvegicus 81 AABR07007130.1 ENSRNOG00000032668 ENSRNOT00000047883 2 1 1 60 1 282492489 282492510 AAGAAGCCCTATGATGATACTC 57 282492450 282492470 GTACTAGATTACTGTGGCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 2 3 3 80 20 2096798 2096817 CCAGAGAAGAAGGTGGAGTG 60 2096857 2097248 AATACAGCAGCATTTCGATGAG 60 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 1 2 2 80 4 33744173 33744191 TGATGGGATCACCTCAGTC 59 33743706 33744130 ATCATCGCATCATCAACCTG 59 NA Rattus norvegicus 81 Pot1b ENSRNOG00000047439 ENSRNOT00000072684 2 1 1 80 9 7889628 7889646 AGTAGAAACTGCGAAACCC 58 7886273 7889584 ATATGCCTGGATCTTCAGC 57 NA Rattus norvegicus 81 Olr1119 ENSRNOG00000034283 ENSRNOT00000045458 3 1 1 60 8 18114596 18114614 CCCTCAAATGCTGAATCCT 58 18114554 18114575 CATGGCTTGCTTAATTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc10 ENSRNOG00000010719 ENSRNOT00000014629 3 1 1 80 5 165380917 165381440 AGCCATCGTTAAGGTCTTCC 60 165381482 165381501 ATGTTCACCACATAGAGCCC 60 NA Rattus norvegicus 81 LOC100910409 ENSRNOG00000049831 ENSRNOT00000075290 2 1 1 60 8 42943884 42943903 AACACCCATGTACTTCTTCC 58 42943843 42943861 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000014502,ENSRNOT00000082191 3 2 2 80 15 57252617 57255277 AGCACTGACATCAAGGACTC 60 57255319 57255338 CGGGATCCCTTCTTCATCTC 60 NA Rattus norvegicus 81 Olr1143 ENSRNOG00000048354 ENSRNOT00000044135 2 1 1 60 8 19289603 19289622 CCATGTATCTGATCACCACC 58 19289645 19289663 GAGTCAGAGCTAACAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039435.1 ENSRNOG00000046897 ENSRNOT00000045534 2 1 1 80 X 76696295 76697037 ATCGAGATCAAAGAGGAAACC 58 76696235 76696254 TTTACATTCTCATCCGTGGG 58 NA Rattus norvegicus 81 Alg1 ENSRNOG00000002883 ENSRNOT00000067932 2 1 1 80 10 10547920 10548533 CTACATCTTCCTCCAGAACCC 60 10547860 10547878 AGTTTGCTCCCACAAATGC 59 NA Rattus norvegicus 81 LOC102546590 ENSRNOG00000042370 ENSRNOT00000042866 1 1 1 80 20 2269457 2269709 CAGTAAGAACGATTATCGCAC 57 2269397 2269415 TAATCACCTCGGAGGAAGG 58 NA Rattus norvegicus 81 Rn60_3_1740.1 ENSRNOG00000056063 ENSRNOT00000089825 2 1 1 60 3 173937527 173937545 AGTACTGTCATCGCAAAGG 58 173937569 173937587 CTGTGAGGAGGACCAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb2 ENSRNOG00000010935 ENSRNOT00000014909 3 1 1 80 15 57314344 57317386 GAGCAGAATTCCATTTAACGTC 58 57317427 57317445 GGGCTAACAGTGTCATTGG 59 NA Rattus norvegicus 81 Apeg3 ENSRNOG00000048353 ENSRNOT00000075745 1 1 1 60 1 70234762 70234780 TTCACTATCAAACGCACGA 58 70234720 70234739 AGGTGTTCTTTAAGGTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062535.1 ENSRNOG00000049935 ENSRNOT00000075453 2 1 1 80 4 181485221 181485239 TATCATCTCAGCCATGGCT 58 181485009 181485177 ACAGTAGCCATGGAGTAGC 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000081146 2 1 3 80 9 65037307 65040634 AATACAAATGAAGGGCTGACAC 59 65040675 65040693 CCTGGAGACCACATCAGAC 60 NA Rattus norvegicus 81 Cdh20 ENSRNOG00000014556 ENSRNOT00000019907 1 1 1 80 13 24896953 24896975 CATTTCTACTACAGTTTGGCTCC 60 24897015 24902758 GCGAGCGGTATTATCTTGG 59 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000031315 ENSRNOT00000043171 1 1 1 60 10 57251326 57251344 AGTACAAGAAGGGCAAGGA 58 57251368 57251386 TGTTTCCTGTCATAACGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467,ENSRNOT00000086979 1 2 2 80 18 36840236 36846376 CAGTATCAACACCCACAACAC 60 36846415 36846436 GAGCTGAAACACTAACTGTAGG 59 NA Rattus norvegicus 81 Zxdc ENSRNOG00000025818 ENSRNOT00000038244 1 1 1 80 4 122283177 122284838 TGATTTCCCTGGCTGTGAG 60 122284882 122284900 TCTTGTTCCCTGAAGTGGG 59 NA Rattus norvegicus 81 Tex2 ENSRNOG00000013659 ENSRNOT00000055114 1 1 1 80 10 94708731 94708750 CTGAGGAAGATGATCCACCA 59 94707076 94708689 GATGACCTCCAACATACCCT 59 NA Rattus norvegicus 81 Ccdc88a ENSRNOG00000004057 ENSRNOT00000067591 3 1 1 80 14 113925247 113927139 CTCCATGAAGTCAAAGCAGG 59 113927181 113927200 ATGGAGCAGACTGAAATCCC 60 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 1 3 5 68 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762936 120762954 GTAGTCCGGTATCGTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Nagpa ENSRNOG00000002895 ENSRNOT00000003888 1 1 1 80 10 10575410 10575428 GCTCATCCGTAATGGAAGC 59 10575471 10576829 CTGAAAGAACCTGTCTCCTG 58 NA Rattus norvegicus 81 RGD1564149 ENSRNOG00000012714 ENSRNOT00000017141 1 1 1 80 20 12932628 12932646 CACTGATCGCACAGATTCC 59 12928438 12932585 TCATCTCCACCATGTCTTCC 59 NA Rattus norvegicus 81 RGD1564149 ENSRNOG00000012714 ENSRNOT00000017141 2 1 1 80 20 12932627 12932645 ACTGATCGCACAGATTCCT 59 12928437 12932585 ATCATCTCCACCATGTCTTCC 60 NA Rattus norvegicus 81 Slc16a5 ENSRNOG00000023476 ENSRNOT00000032016 3 1 1 114 10 104024146 104030740 GACTTATCACAGGCCTGGG 60 104030817 104030836 GAGATTCCTATGGAGGCCAG 60 NA Rattus norvegicus 81 Il22ra1 ENSRNOG00000027976 ENSRNOT00000031512 2 1 1 81 5 154099192 154101587 AACTCCCTGAATGTCCAGC 60 154101632 154101650 GGTCCAAGACAGGGATCAG 60 NA Rattus norvegicus 81 Gpr146 ENSRNOG00000001288 ENSRNOT00000001733 3 1 1 60 12 17346881 17346899 ATGTGACACTGCTCATCCT 59 17346839 17346857 AGTGCAGTGGAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufaf1 ENSRNOG00000005006 ENSRNOT00000006874 1 1 1 83 3 111459827 111460953 GAAGTCAAGATTCCTTTCTCCA 58 111459765 111459783 CTTGTCCAGTATCAGTGGG 57 NA Rattus norvegicus 81 Olr1219 ENSRNOG00000046384 ENSRNOT00000074713 2 1 1 60 8 42260731 42260749 TTACGATCGCTATGTTGCC 58 42260772 42260791 CACAGGAGACATGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC294154 ENSRNOG00000038883 ENSRNOT00000059426 1 1 1 80 20 7363785 7363803 AGCAGAGCAGGAATGTACC 60 7347017 7363743 AATCACCCAGATGACATCTCC 60 NA Rattus norvegicus 81 Vom1r34 ENSRNOG00000049710 ENSRNOT00000064246 2 1 1 60 1 71954966 71954984 CCTCACTCCCAATCAGGAC 60 71954924 71954943 CAGGATAGTATGGGTTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 3 2 2 130 14 46022149 46024969 GATGTTGAAAGCCCTGTCAC 60 46025062 46025080 TCAACAACACCTCCCACTG 60 NA Rattus norvegicus 81 Egf ENSRNOG00000053979 ENSRNOT00000089504 2 1 1 80 2 68868349 68868370 AAGCTGTCTGTGATTGAAATGG 60 68868410 68872815 GAATGGGTGACCTACATCGT 60 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 2 2 2 80 17 29646263 29646283 TGTCTGTGTACAATCACAGGT 59 29646322 29647503 TTCATCAAAGTAGTGACACAGC 59 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000081983 3 1 2 84 1 81080291 81080310 GAGCTTCAGTCAGAGTTCGA 60 81080357 81098917 TTTGCCACACTCATCACAC 59 NA Rattus norvegicus 81 AABR07040944.1 ENSRNOG00000005430 ENSRNOT00000007194 3 1 1 70 X 115375072 115375112 GCTAACTCCTCAGGGACAG 59 115375020 115375038 AATGCTTCTTGTTGGCAGC 60 NA DesignRelaxed Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000034372,ENSRNOT00000081061 2 3 4 80 X 53366502 53400420 CTACCAGTCTTTAGCTGACCT 59 53400461 53400480 GCCTTCTGGAGTCTTCTGAG 60 NA Rattus norvegicus 81 Ttc36 ENSRNOG00000014700 ENSRNOT00000019933 2 1 1 83 8 49109779 49109798 CCATCCTCAACCCTAATACC 57 49108825 49109734 AAACTCCATCTTCATCTCCC 57 NA Rattus norvegicus 81 Golt1a ENSRNOG00000002936 ENSRNOT00000080486 3 1 1 97 13 50539191 50539978 TTTGGAAACCTGCTGTTCC 59 50539112 50539131 CTTGTTCCCTTGAGCTTGTG 60 NA Rattus norvegicus 81 LOC100909435 ENSRNOG00000047193 ENSRNOT00000072832 1 1 1 60 1 11758356 11758375 ATCATCACTCTCACCTTGCT 59 11758393 11758416 TCTGGAGGAAGAAATACATAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ranbp9 ENSRNOG00000017951 ENSRNOT00000024174 1 1 1 80 17 24036989 24037010 TGAATGTACCGGAACTAAACAG 59 24034355 24036952 CCATGTCTACATCATTACTGGTG 59 NA Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674,ENSRNOT00000079707 3 2 2 80 13 48700329 48700348 AGATGCTCTTGGAAGATGTG 58 48700391 48703420 TGCCAGAATCTTTCTCCTG 57 NA Rattus norvegicus 81 Igfbp3 ENSRNOG00000061910 ENSRNOT00000088355 1 1 1 80 14 87461538 87461558 AAAGTTGACTATGAGTCCCAG 58 87461066 87461496 GCAGGGACCATATTCTGTC 58 NA Rattus norvegicus 81 Ftl1 ENSRNOG00000020843 ENSRNOT00000028315 1 1 1 80 1 101448774 101448792 TGGAGAAGAACCTGAACCA 58 101448510 101448730 AGAAGTCACAGAGGTGAGG 58 NA Rattus norvegicus 81 RGD1564148 ENSRNOG00000004092 ENSRNOT00000005433 3 1 1 60 10 55223266 55223286 TGAAAGTGACTCAGAAGTAGG 57 55223226 55223247 TTCCTCACTACTATCTTCTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 3 2 3 93 6 76701664 76702743 ACAATTAGGAAGGCAATGGC 59 76705063 76705081 CAGATCTAGCACTGTGCAG 58 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066 2 1 3 80 13 50577765 50578648 CACCTCTTCATGCAAGTCC 59 50577703 50577722 CGTGTCTTGCTCATTTAGCT 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066,ENSRNOT00000076242 2 2 3 92 13 50564112 50564130 TGAAATCTCCTGTGCCCTG 60 50559141 50559159 TGTAGCTTCACAGCATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Adcy2 ENSRNOG00000032150 ENSRNOT00000047627 2 1 1 80 1 37596492 37596511 AACACCATTCTACTCCACAC 58 37596554 37607360 TTTCCAAATGCCTGGTCTC 58 NA Rattus norvegicus 81 Gpr75 ENSRNOG00000022176 ENSRNOT00000033437 2 1 1 60 14 115276620 115276638 ACAGTTGATGCTTCCAGAC 58 115276660 115276680 GATCTCCATTTCCCTTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa4l2 ENSRNOG00000031851 ENSRNOT00000045083 1 1 1 93 7 70822379 70822397 ATGATCGGCTTCATCTGCT 59 70822454 70823198 TCTTTCTGTCCCAGCAGAC 59 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235,ENSRNOT00000051028 3 2 2 80 5 99517796 99517814 GAAACTCCAGCACCTTCCT 60 99514249 99517753 AGTAGAAGCATCAACTCGCA 60 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 2 1 1 62 X 152196416 152196570 CATAAAGGTATATGACTTGGTGGAC 60 152196587 152196608 GTAGTGAATGCCTTCATTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef33 ENSRNOG00000007061 ENSRNOT00000061980 3 1 1 80 6 3076159 3076178 AAGTCGGATATCTACACCCT 57 3076220 3079124 CTTCAGAACATTCTGCAGGT 58 NA Rattus norvegicus 81 Ccdc152 ENSRNOG00000039473 ENSRNOT00000060492 2 1 1 80 2 53116413 53117305 TCTACAGAAGGAAGCTTCAGC 60 53116353 53116374 CTAGGTCTCGGATAGTGTTCTG 60 NA Rattus norvegicus 81 Inhba ENSRNOG00000014320 ENSRNOT00000019272 2 1 1 148 17 51909782 51912375 ACCCGAAAGAGAATTTGCTG 59 51909653 51909671 AAATCCTCTCAGCCAAAGC 58 NA InUTR Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000052369 3 1 4 81 14 22433565 22436175 AGAATGACATCCTGGGTCAC 60 22436216 22436237 TGATAGATTGCCTCATAGAGGC 60 NA Rattus norvegicus 81 Olr1274 ENSRNOG00000047291 ENSRNOT00000073665 2 1 1 60 8 43043840 43043859 AACACCCATGTACTTCTTCC 58 43043799 43043817 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba2 ENSRNOG00000021113 ENSRNOT00000028672 2 1 1 80 1 90025330 90025349 TGACAATGGACAAACTCTGG 58 90024240 90025288 CTTCTTCTCCTTGACTCTGC 58 NA Rattus norvegicus 81 Laptm4b ENSRNOG00000006766 ENSRNOT00000008969 1 1 1 80 7 72958251 72958269 ATGTCAGTGAACCCTACCT 58 72958310 72960997 GATCAAGTAGCCCTTAAATGTC 57 NA Rattus norvegicus 81 Pet100 ENSRNOG00000050169 ENSRNOT00000071928 2 1 1 81 12 2170674 2171437 GGTGTTTCGGATGTCACTC 59 2171481 2171500 ATAGTCCTCGAACCACTCAG 59 NA Rattus norvegicus 81 Spc25 ENSRNOG00000006731 ENSRNOT00000008837 2 1 1 80 3 55439159 55441247 GCTAAGGAATATGAAGTGTCCG 59 55439100 55439120 GTTGGTCTTCCTGACTTTCTC 59 NA Rattus norvegicus 81 Vom1r104 ENSRNOG00000031140 ENSRNOT00000049591 1 1 1 60 4 121811042 121811061 TGTTCATTAGCAGTCACCTC 58 121811001 121811020 ACATTCGTGGTCAAATTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 1 1 1 60 1 11965334 11968514 GTTGGTGGAGCGATTTGTC 60 11968536 11968556 TAGTTAGCATGCCAGAGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Pdia5 ENSRNOG00000032327 ENSRNOT00000067984 3 1 1 80 11 68547307 68554394 GTTGAAGAATCCACAGCCG 59 68554438 68554456 GTCAGGTGATAAACGGAGC 58 NA Rattus norvegicus 81 Il10 ENSRNOG00000004647 ENSRNOT00000006246 1 1 1 85 13 47740986 47741004 TGGCCCAGAAATCAAGGAG 60 47741053 47742068 GAAATCGATGACAGCGTCG 60 NA Rattus norvegicus 81 Taldo1 ENSRNOG00000018367 ENSRNOT00000024863 2 1 1 86 1 214385113 214385131 CAAATGGCTGTGGAGAAGC 60 214385180 214385692 CATTCGTTCTGTGAGCATCC 59 NA Rattus norvegicus 81 Tspo2 ENSRNOG00000050521 ENSRNOT00000073130 2 1 1 96 9 14513193 14513884 TACTCTGTCATGGGCTACG 59 14513944 14513962 GGAAAGAGTAGAGGCCGAG 59 NA Rattus norvegicus 81 LOC100360690 ENSRNOG00000049161 ENSRNOT00000074115 3 1 1 80 1 252166244 252167329 AAGAGCTCACATAACACTAGGA 59 252166185 252166206 GTCAAGAATCCAGTAATCAGCA 59 NA Rattus norvegicus 81 Cdh10 ENSRNOG00000009771 ENSRNOT00000013152 2 1 1 80 2 69619097 69619118 ATACATCAAAGCCACTTGATCG 59 69619154 69623913 CTTTAGGATTATTGATCTCGGCAG 60 NA Rattus norvegicus 81 Rn60_5_0814.3 ENSRNOG00000030866 ENSRNOT00000047961 3 1 1 80 5 77551716 77551737 TGACAGATATGTCACGTTTCAC 59 77551312 77551676 CTTTGTTCTGCCATAGAGCA 58 NA Rattus norvegicus 81 Zgrf1 ENSRNOG00000036980 ENSRNOT00000014695 2 1 1 80 2 231909832 231909850 GGCAAGTTCACATACCAGC 59 231909894 231911140 TCAGATGCTCGATGATGGA 58 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000050061 ENSRNOT00000071116 3 1 1 93 5 60946550 60952071 TGTCACAGGCTAAGTCTTCC 60 60946476 60946494 ATGAGGTCAACATCGGAGG 59 NA InUTR Rattus norvegicus 81 Plekhg2 ENSRNOG00000030266 ENSRNOT00000044326 1 1 1 84 1 85394807 85394825 CAAGACTTTCTGGCAGTCG 59 85394952 85395125 TGAGGCTTATCGTTCTGGG 59 NA Rattus norvegicus 81 Olr226 ENSRNOG00000061860 ENSRNOT00000090329 1 1 1 60 1 148847541 148847560 GCCTATGTGTTGGTGTTGAC 60 148847500 148847519 TTGGGTGGTTCCTAATTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm34 ENSRNOG00000029799 ENSRNOT00000040156 1 1 1 80 3 160453107 160455391 CTACGAAGAACAGAGTGCC 58 160453045 160453064 TCTTTACAAGCTCATTGCCT 58 NA Rattus norvegicus 81 Cd300e ENSRNOG00000036726 ENSRNOT00000029092 1 1 1 80 10 103603397 103608802 CTTCCAAGGTTGTTTATCTCTGAC 60 103603340 103603358 TATTGACACTGCACACGGA 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 2 2 2 80 3 7121472 7121490 AAAGCCTCACCTACTGCTG 60 7121532 7122253 ACTTTCTTGAATAGCTCTGCG 59 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975,ENSRNOT00000014078 3 2 2 60 14 75880780 75880798 AGACACCTGCCTACTTCAC 59 75880822 75880840 GTAGGGTTCATGCTGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bet1l ENSRNOG00000013165 ENSRNOT00000017684 1 1 1 82 1 213604489 213604509 TGGAGGAGATTCTAGACAGAG 58 213604203 213604445 CAAAGCCAGCGATTTAAGC 58 NA Rattus norvegicus 81 AABR07058366.1 ENSRNOG00000025046 ENSRNOT00000035216 1 1 1 85 7 112057227 112057245 AGTTGAGGTCAAGGAAGGG 59 112057294 112058126 TATTGTTCCAGACAGGGCT 58 NA Rattus norvegicus 81 Rpo1-3 ENSRNOG00000000954 ENSRNOT00000001261 1 1 1 84 12 9694509 9704216 ATGGGCTGGATGAAGTGTC 60 9694443 9694462 CTTTATGGGAGGGCAATGTG 59 NA Rattus norvegicus 81 Zfp862 ENSRNOG00000024795 ENSRNOT00000048576 2 1 1 80 4 78140547 78140565 AGGAAGAATGGATGCTCCT 58 78140609 78142339 CAGTTGGTCCTAGAGATGC 57 NA Rattus norvegicus 81 Olr1256 ENSRNOG00000049225 ENSRNOT00000072605 2 1 1 60 8 42409336 42409356 ACTGAATTCTCACCTTCACAC 58 42409373 42409396 GTCTATGAGGGACAAGTTAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562039 ENSRNOG00000030519 ENSRNOT00000049790 2 1 1 80 X 80351158 80351177 GTACTAAGGTTGCCTCTCCC 60 80350753 80351116 GGAAACGTATGAAATCGCCA 59 NA Rattus norvegicus 81 Slamf6 ENSRNOG00000038286 ENSRNOT00000029315 2 1 1 80 13 90314152 90314172 TCATACACTGCACAGATAACC 58 90314213 90316211 ACTTAGTCGTTCAAAGACCC 58 NA Rattus norvegicus 81 Hyi ENSRNOG00000037518 ENSRNOT00000056815 2 1 1 90 5 137191340 137191359 AGTATTTCCTGGACACTCCC 59 137191492 137191607 CAGTGGAATATGTCCATTTGCA 59 NA Rattus norvegicus 81 Adck1 ENSRNOG00000012685 ENSRNOT00000016962 3 1 1 80 6 111724454 111724472 GGAATTTGTGGAGGGAGGT 59 111724515 111734294 TGGCAGGAGATCTCATTCAC 60 NA Rattus norvegicus 81 Olr1302 ENSRNOG00000039244 ENSRNOT00000060101 1 1 1 60 8 43192115 43192133 TTCATGTACCTTCAGCCCT 58 43192073 43192091 ACACAGAAGACACTTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k8 ENSRNOG00000016378 ENSRNOT00000022190 1 1 1 80 17 56121138 56122027 CACCACGATATCAAACCTAGC 59 56122069 56122087 CATTTGAACACTCAGGCCA 58 NA Rattus norvegicus 81 Map3k8 ENSRNOG00000016378 ENSRNOT00000022190 3 1 1 80 17 56127025 56127563 ACCTGTACATAATCCACAAGCA 60 56127604 56127622 CTATCAGCTCCCTCATGCC 60 NA Rattus norvegicus 81 Krt83 ENSRNOG00000032859 ENSRNOT00000031257 2 1 1 80 7 143081280 143081298 CAAGGCTCAGTACGATGAC 58 143081037 143081237 TTCATCTCCTCACACTTGGT 59 NA Rattus norvegicus 81 Gm2a ENSRNOG00000052219 ENSRNOT00000078910 3 1 1 80 10 40443921 40449007 CTTCTCCTCAGAAGGTGGA 58 40449051 40449069 CTAGCTGTTCTACGCAAGG 58 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 1 2 2 85 17 55127086 55127105 GAACTGCAGTCAGAAGACAC 59 55127153 55128486 TTGGTTTCCCTCTCCAGTG 59 NA Rattus norvegicus 81 Rn60_7_1164.3 ENSRNOG00000051320 ENSRNOT00000076415 1 1 1 60 7 116531900 116531919 ATCTAAGAAGATTGACCGCC 58 116531859 116531879 CACATTCCCTTTGACCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 1 2 2 80 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477449 91477467 TTTCTTTGCTCAGCTCCAC 58 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 3 2 2 81 1 101843999 101844018 CTCTACCTGGTTACCAACGG 60 101843371 101843956 GCTGATAGAACACCTCACCA 60 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 3 1 1 61 7 140467184 140467202 CTACGCTTCCTCATGAACC 58 140467227 140467660 ATCTCAGAGAACACGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100363675 ENSRNOG00000011119 ENSRNOT00000014787 3 1 1 80 16 889834 889854 ACCCTGTCTTGTACATGTACC 60 885108 889792 GCGAATCATTGGAATCGGG 60 NA Rattus norvegicus 81 Nlk ENSRNOG00000008704 ENSRNOT00000011726 3 1 1 80 10 65844600 65844620 GGAACAGCAGAAAGGAAACAG 60 65842071 65844559 ACGGTGGAACTGATAAAGCT 60 NA Rattus norvegicus 81 Reg1a ENSRNOG00000006486 ENSRNOT00000057869 3 1 1 91 4 109500106 109500125 CTACAAATCCTGGGACACTG 58 109500175 109500380 CTCTCCATTTCTTGTATCCTGAG 59 NA Rattus norvegicus 81 Ankrd22 ENSRNOG00000019190 ENSRNOT00000026093 2 1 1 80 1 252448612 252461198 TATATTCTGAGCCCATCTGCC 60 252448552 252448572 AATGGTTGCTTTCTTTCACCC 60 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076178 2 2 3 60 X 65291052 65291072 AGAAGATTGAACGGGAGAAGG 60 65291094 65291112 GTCTGCTCCTCAATCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 2 1 1 174 10 105564936 105564954 TCTCCTGAAAGCTTCTCCT 58 105565094 105565114 GGTTTGACCCTTCTGACCT 59 NA DesignNoJunction Rattus norvegicus 81 Olr796 ENSRNOG00000046306 ENSRNOT00000075514 3 1 1 60 3 103657990 103658009 AATGAAGATGGCAATGAGGA 57 103658029 103658050 TCAAGAGATTTGTCTATAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 2 1 1 79 20 6193188 6194112 TCACAGGATGATTCAAGAGC 58 6193128 6193146 CTCTCATGAACATGAGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Espnl ENSRNOG00000024717 ENSRNOT00000033629 1 1 1 80 9 98480221 98481809 CAGAAGATCAGGACCAGAGTC 60 98481851 98481869 GAGTCTGCGAATACCTCCA 59 NA Rattus norvegicus 81 Ppia ENSRNOG00000027864 ENSRNOT00000091873 1 1 1 68 14 86673832 86673850 GTGTTCTTCGACATCACGG 59 86673882 86675728 TTTGTCTGCAAACAGCTCG 59 NA DesignRelaxed Rattus norvegicus 81 Atp6v0d1 ENSRNOG00000017235 ENSRNOT00000023606 3 1 1 80 19 37483041 37483063 CCTTCTACAAGTTCTGTACTCTG 58 37482858 37483001 GGCGATCTGCTTCAAACTC 59 NA Rattus norvegicus 81 Rn60_5_0814.20 ENSRNOG00000051058 ENSRNOT00000076634 2 1 1 60 5 77733802 77733823 ATTTGAATGTACTGAGTGTGGG 59 77733763 77733784 CTGATGGATAACTAGGTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 2 2 2 80 2 198291941 198291961 TGATCAAACTTGCCTCAAGTG 59 198292002 198292409 CTTCTGAACTCTCCACTCCT 59 NA Rattus norvegicus 81 Fbxw5 ENSRNOG00000028674 ENSRNOT00000034089 2 1 1 80 3 2728381 2728699 CTGCACAGTGAAGATCTGGA 60 2728740 2728760 TAACTCCAGTTGTATGGCCTC 60 NA Rattus norvegicus 81 Olr25 ENSRNOG00000046609 ENSRNOT00000041243 1 1 1 60 1 150130152 150130173 CCTACTTAGTATGCTGTTCCTG 58 150130190 150130212 GATGATAAGGTTCCCTAACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger1 ENSRNOG00000004094 ENSRNOT00000005470 3 1 1 153 19 24802129 24802148 CATCACTTCAACCACAGCTG 60 24802264 24802707 CAACACCACCAATACCAGC 59 NA Rattus norvegicus 81 Olr29 ENSRNOG00000049938 ENSRNOT00000049595 1 1 1 60 1 150262146 150262165 GATGTTCCTGAGCTACAGAC 58 150262105 150262126 TGACTGCTAAGTACATTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex13 ENSRNOG00000054896 ENSRNOT00000081405 3 1 1 80 14 108396106 108401922 GCGATGAAGTAACAGACAGC 59 108396045 108396063 CGGCAAAGTCGTATTCTGC 60 NA Rattus norvegicus 81 Tmem141 ENSRNOG00000028254 ENSRNOT00000067479 2 1 1 80 3 2844624 2844643 GTCAGAAATGCAGCAATCTG 58 2844065 2844583 TCTAGTTGTTGTGATCTGTGC 58 NA Rattus norvegicus 81 Imp4 ENSRNOG00000013285 ENSRNOT00000066913 3 1 1 80 9 37770683 37770703 TGTCTACAAGAAGACAGACCA 59 37770538 37770644 CGAATCATGTACAACTTGAGCT 59 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625,ENSRNOT00000003512 3 2 2 80 X 82675724 82676266 AGCCAGAGAACATCTTGCT 59 82673004 82673024 CTTGATCCACTGACTCTTTGC 59 NA Rattus norvegicus 81 Mmp8 ENSRNOG00000009907 ENSRNOT00000013936 1 1 1 80 8 5773498 5773518 ACTATGCTTACAGAGAACCCA 59 5773557 5775103 CTGAAGGTCCATAGATTGTCTG 58 NA Rattus norvegicus 81 Fkbp5 ENSRNOG00000022523 ENSRNOT00000033119 3 1 1 80 20 7989645 7994833 GTATCTTGGACCACAATATGGT 58 7989586 7989607 TCATACATAAGCTCAGCATTGG 59 NA Rattus norvegicus 81 Tcf23 ENSRNOG00000025736 ENSRNOT00000009090 1 1 1 95 6 26766630 26769469 CCTCTTAAGAAGTGGCCCA 59 26766553 26766571 GATGGTTGTGGTGGAATCG 59 NA Rattus norvegicus 81 Use1 ENSRNOG00000016619 ENSRNOT00000022650 3 1 1 86 16 19763264 19763576 TGGAGAAGTATGTGGGTGC 59 19763700 19763719 ACTCACTGATCACTTCCGAG 59 NA Rattus norvegicus 81 LOC302192 ENSRNOG00000049503 ENSRNOT00000051066 1 1 1 85 9 463451 463469 AGTGTCAATTCGAGAGGGA 58 462042 463402 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Papolg ENSRNOG00000006261 ENSRNOT00000008919 2 1 1 80 14 108646330 108649610 GTGAAAGTAAGAATCTCCCACC 59 108646271 108646290 CTCCAAGCCTGTAAGATCCA 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 1 2 4 173 15 36823466 36824068 AAGTCGTTGAGGTCTCTGC 60 36825285 36825303 GTGCTGCTATCACAAAGGG 59 NA Rattus norvegicus 81 Hoxb1 ENSRNOG00000008506 ENSRNOT00000011416 2 1 1 89 10 84214842 84214860 CATCTTGCTCGTCAGAACC 59 84214912 84215367 ACACCTTTGCTGTCTTAGGT 59 NA Rattus norvegicus 81 Prkar1b ENSRNOG00000028733 ENSRNOT00000031896 3 1 1 80 12 17688276 17693751 AAAGTCTCCATCTTAGAGTCTCTG 60 17693790 17693808 ATCTTCAAACTGCACAGGC 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 2 1 1 96 3 2443901 2444226 AGTTCTGGGAGGTAATCAGC 59 2443824 2443842 TAGTACACGTTGATGCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Herc4 ENSRNOG00000061040 ENSRNOT00000083017 3 1 1 80 20 26798141 26798836 CAGATATCTCAGCAGGTGG 57 26798879 26798898 AGCTTCAACATCAGGTAAGG 58 NA Rattus norvegicus 81 LOC100910951 ENSRNOG00000046980 ENSRNOT00000044624 1 1 1 80 10 11376799 11376821 TTGGGTATCATATCTCTGGAAGG 59 11376861 11384056 AGTGACCAGGTCTGAATGG 59 NA Rattus norvegicus 81 rno-mir-344a-1 ENSRNOG00000049433 ENSRNOT00000053681 3 1 1 60 1 122373326 122373344 GCTCCTGGCTAGATTCCAG 60 122373284 122373302 GCTTACAGTCAGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bbs5 ENSRNOG00000007127 ENSRNOT00000009396 2 1 1 80 3 55904688 55906373 AATGGAAGAGAAGCCACAG 57 55906415 55906435 TGGTCATCAGAGTCTATTTCC 57 NA Rattus norvegicus 81 Wbp2 ENSRNOG00000007971 ENSRNOT00000010826 1 1 1 80 10 104634546 104634567 AACGACATGAAGAATGTACCAG 59 104633399 104634505 AAAGATGACCCGGTATGGA 58 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 2 2 2 85 1 72639155 72639174 TAAAGACTCTGGAGCCAGAG 59 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000065531 3 1 2 88 6 39362132 39362625 GCTGTAAGGGATGGGATCTC 60 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA Rattus norvegicus 81 Mtpap ENSRNOG00000016578 ENSRNOT00000022462 2 1 1 81 17 56057608 56058158 GACTGCCAACAATAGTATTGCT 59 56057548 56057571 CAAAGCTCTTACTCTTGAATCCAG 60 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921,ENSRNOT00000003249 3 2 2 80 13 103287902 103289471 GCAGGAAACAAGATTATCCAG 57 103289511 103289531 ATCCCATTTCTTACATCCAGG 58 NA Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000021167 1 1 2 80 4 117584813 117589367 CTAGTAGTTGAGGGTTCAGGG 59 117584753 117584771 GAGCCATGGGAGACTTCTG 60 NA InUTR Rattus norvegicus 81 Fam109a ENSRNOG00000028206 ENSRNOT00000030600 1 1 1 76 12 40227213 40227231 TTCCTGTACAAACGTGGTG 58 40227155 40227173 TAGAAGAGTATGTTGCCGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmat1 ENSRNOG00000024135 ENSRNOT00000042714 3 1 1 80 X 105818207 105818225 ACACAGTACTACTCCAGCA 58 105810429 105818166 TAGGTTCTCATTCTGTATGCTG 58 NA Rattus norvegicus 81 Pcnt ENSRNOG00000001276 ENSRNOT00000048218 1 1 1 80 20 12991748 12993773 AAGAAAGAGAAGCTGGCAC 58 12996580 12996600 CTCTGGTAAGAGATTCCACCT 59 NA Rattus norvegicus 81 Ccdc137 ENSRNOG00000048712 ENSRNOT00000072099 2 1 1 81 10 109632129 109633598 GAAGAAAGCGTTCCAGAAGC 60 109633641 109633660 CTCTTGCTCCAATCTGTCCA 60 NA Rattus norvegicus 81 Sult1c2a ENSRNOG00000042111 ENSRNOT00000061861 1 1 1 80 9 4157491 4168136 TGGACAAACAACTGTAAGTACC 59 4157432 4157454 CATTCTGTAGAAGTGGTAGTAGG 58 NA Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000082415 3 1 2 90 1 4535427 4535494 GAGGGACATCATTGGAAGAG 58 4529639 4529657 CTGTTCCTTCAGGTTCTGG 58 NA Rattus norvegicus 81 Mrps18c ENSRNOG00000002178 ENSRNOT00000002962 2 1 1 94 14 10441247 10442166 CATAACAGGTCTTTGTGGGA 58 10441088 10441108 GATCCTTGTATGTAACTGGCA 58 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600,ENSRNOT00000064942 3 2 2 80 15 85975357 85981446 AATCGAAGGTCTCTACCCG 59 85975295 85975313 TCAGCTTGCTCATTATCCG 58 NA Rattus norvegicus 81 Sgce ENSRNOG00000046905 ENSRNOT00000074177 2 1 1 80 4 29742326 29742346 ACTCGCTTATATCATGTGCTG 58 29740629 29741349 TGATGGACAAGTTGGATATCTG 58 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 2 1 2 99 X 63290360 63291042 GCCACATTGGATGTTACCA 58 63288340 63288358 TCCCATGAGCTACATGACC 59 NA Rattus norvegicus 81 LOC688812 ENSRNOG00000054096 ENSRNOT00000084052 2 1 1 87 12 4113272 4113297 CAGGACACTTTACTCAGTAATGTC 59 4113343 4113361 TCCATCAACTAGTCCCAGC 59 NA Rattus norvegicus 81 Ranbp10 ENSRNOG00000018000 ENSRNOT00000024891 1 1 1 80 19 37754260 37754278 GATGTGATCGGCTGTTGTG 59 37749037 37754216 GAAGGCAATACCAAGGCTG 59 NA Rattus norvegicus 81 Hcls1 ENSRNOG00000038881 ENSRNOT00000003326 3 1 1 80 11 66739428 66740062 ACCCATAGAAGCTGCTTCC 60 66739366 66739384 TCTCGCTTCCTCTTCTCCT 60 NA Rattus norvegicus 81 Lcp2 ENSRNOG00000005620 ENSRNOT00000046135 2 1 1 80 10 19038092 19039548 GAAGATAAACCAGGATGGCAC 59 19039588 19039608 AACACCATGAGGACATATGGA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000077127 3 1 11 105 6 99058012 99058606 CCCAACCACAGATTCTGGA 59 99058673 99058693 TTATCCTCTGGGTAACACTGC 60 NA Rattus norvegicus 81 Csap1 ENSRNOG00000049151 ENSRNOT00000075648 3 1 1 60 10 13230192 13230213 TTAAGTTTGGCAACAACTGGAG 60 13230233 13230252 ACTTCAATCTCAGCCCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870,ENSRNOT00000020414 2 2 2 80 9 78314731 78314750 ATGAGGAAGCTCAGAGTACC 59 78299663 78314691 CTTTCACCCAATCAAACTTCAG 58 NA Rattus norvegicus 81 Acvr1b ENSRNOG00000006934 ENSRNOT00000009345 1 1 1 80 7 142848714 142849861 AACCAAACGATACATGGCT 57 142849905 142849923 ATATCGGCACACTTGAAGG 58 NA Rattus norvegicus 81 Irf3 ENSRNOG00000043388 ENSRNOT00000027786 2 1 1 80 1 100994865 100994884 AGGGACTTTGTACATCTGGA 58 100994927 100995096 TTCCAAGAGGTCTTCCTGG 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 2 4 6 81 15 36972825 36976236 ACATGGGAGATGCATTTAGC 58 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393,ENSRNOT00000057986,ENSRNOT00000058000,ENSRNOT00000089234 1 5 5 117 1 79685715 79688710 CCTTCACGTGAAATCCTCTC 58 79685617 79685635 GTGAACACGGAGAAGAACG 59 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 2 2 2 80 19 33334780 33340696 AGCCAGAGAAGGAAATGAC 57 33334718 33334737 TATTCTCCAGAAGCCAAGTG 57 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000001667,ENSRNOT00000051565 1 2 2 80 12 16046365 16046383 AGACGGACATGAAGACCAC 59 16046427 16046678 TCTGCAGACGATGGATCTC 59 NA Rattus norvegicus 81 AC107531.3 ENSRNOG00000059786 ENSRNOT00000015108 1 1 1 80 1 168715706 168716023 TATTCACTGGCTCTTTAAGGGA 59 168716064 168716082 CTGTTTCCTTCAGGTTCCG 59 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 2 1 1 60 10 11913406 11916799 TGAGGATTTGAACTTGACAGG 58 11916818 11916839 CTCTAGGCTTAACTTCTGACTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC686013 ENSRNOG00000005533 ENSRNOT00000007407 2 1 1 80 19 25125612 25125706 CTAACCCTTTGAGCATCTCCT 60 25125748 25125766 AGTACCGGAAGATGGACAC 59 NA Rattus norvegicus 81 Pam16 ENSRNOG00000004608 ENSRNOT00000006314 1 1 1 102 10 11153293 11153565 GTGCAGAAGAATTATGAACACC 58 11153789 11153807 CATCTAGGCGTTCCTTTGC 59 NA Rattus norvegicus 81 Gpr180 ENSRNOG00000009766 ENSRNOT00000078103 3 1 1 83 15 103358010 103358028 TTAAAGGTCCTCACCACCG 59 103358075 103358221 ATCCCTGGAGTACCTGGAG 60 NA Rattus norvegicus 81 Mgea5 ENSRNOG00000017822 ENSRNOT00000065172 3 1 1 80 1 265514904 265515401 TATTGGAGACAAGTTAGTAGGAGG 59 265514847 265514870 CAAATACCATCTTCATCTTCGAGG 60 NA Rattus norvegicus 81 Slfnl1 ENSRNOG00000009906 ENSRNOT00000013193 2 1 1 199 5 139471800 139472010 CGTGCCTCTCAAGGTACTC 60 139472776 139472794 CATCCACCTTCTCCTCCAG 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 3 4 6 80 14 44526461 44526480 TGGGTCTCTGGTTGAAATCC 60 44526523 44526855 GAACAAGCAACACCTGTCC 59 NA Rattus norvegicus 81 Dcaf15 ENSRNOG00000006551 ENSRNOT00000008786 3 1 1 80 19 25214179 25214199 GCTACATCAATTACACCAAGC 58 25214033 25214138 TGTCATCCTCAAACTCATCC 57 NA Rattus norvegicus 81 Rn5-8s ENSRNOG00000059852 ENSRNOT00000085643 3 1 1 60 14 46646201 46646219 ATGAAGAACGCAGCTAGCT 60 46646242 46646261 TGTCGATGATCAATGTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000080706 2 1 2 82 16 19996453 19996471 TACAGAGGAGCAACAGGAC 59 19995041 19996409 TACTCCTCAGGTCATCATGGA 60 NA DesignNoJunction Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672,ENSRNOT00000036359 3 2 2 80 9 78597022 78602014 GAAATCCAAGCTGTCTCAGC 59 78596961 78596981 CAAGACTTCTCGATCGTACTG 58 NA Rattus norvegicus 81 Timd2 ENSRNOG00000021345 ENSRNOT00000059468 2 1 1 80 10 31765010 31767566 CTCACAGATCAGAAGCCAC 58 31764948 31764967 CTGTAGGAGTATGGGATGGG 59 NA Rattus norvegicus 81 RGD1304567 ENSRNOG00000025034 ENSRNOT00000032859 3 1 1 84 5 171245290 171245939 CAACATGTCTGGCTTCCTC 59 171245986 171246005 TTCACAAGGTGACCTTTGTC 58 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 2 3 3 80 20 27173890 27173909 GTGCAGTTTGCTTCAAAGGA 60 27173949 27174504 GATCTCAATATACCTGTGCCCT 60 NA Rattus norvegicus 81 Snx32 ENSRNOG00000026527 ENSRNOT00000036745 1 1 1 80 1 220875525 220876093 GACTGAGAAAGCTGGAAGG 58 220875463 220875482 AGTCTCGCATGTAGTACCTC 59 NA Rattus norvegicus 81 Snx32 ENSRNOG00000026527 ENSRNOT00000036745 3 1 1 80 1 220875532 220876101 CTTCGAACGACTGAGAAAGC 59 220875471 220875492 ATGTAGTACCTCAGCATGTCAG 60 NA Rattus norvegicus 81 Olr1162 ENSRNOG00000047533 ENSRNOT00000049132 1 1 1 60 8 20054676 20054695 GCAGACTCACAACAAATCCA 59 20054717 20054736 AATGAAGAACGACACCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 1 2 2 80 3 48535867 48535888 GTCTTTGGAGTCACTACTTTGG 59 48519951 48535827 AGGGCTGTAAACTCTTGAGG 60 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 3 2 2 80 3 48508582 48508600 ACACTATCTACCCACACCA 57 48506646 48508540 AGGTGAAATAGTAGTCACTCG 57 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 80 3 93926472 93930914 CAGGCGAGACTATCTCAGG 59 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Cilp ENSRNOG00000029911 ENSRNOT00000044887 2 1 1 80 8 70771122 70771141 GAGTACTTCTGTAAGGCGCA 60 70771183 70773101 CTCATCGTGTGCAATGACAG 60 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252,ENSRNOT00000082160 1 2 2 80 10 83097338 83098167 TCCATCAAAGAAATTAGCCAGG 59 83097279 83097297 CTTGAGCATCTGAAGGGCT 60 NA Rattus norvegicus 81 Ctsc ENSRNOG00000016496 ENSRNOT00000022342 1 1 1 80 1 151941438 151941457 GTTTGCCAGAATCTTGGGAC 60 151941497 151947729 TTCCACAAGATTCTTGGTTTCG 60 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323,ENSRNOT00000040701 2 2 2 81 2 60956367 60960584 CTGCTGCTTAAAGGACTTGG 59 60960628 60960646 TCTTCTTCACTTCTGGCCA 59 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083971,ENSRNOT00000083568 3 2 2 80 10 36285558 36285576 GGAATGAGGATGAGAGGGA 58 36285620 36287052 CTCCTTCGGGAATAACCAG 57 NA Rattus norvegicus 81 LOC684471 ENSRNOG00000048793 ENSRNOT00000074980 1 1 1 60 10 34415528 34415546 AACTGTGATGAAGATGCCC 58 34415570 34415588 GGAAGAGCAAGTGGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 2 2 2 80 18 58415752 58418513 TCACTGCAGATCTTACTTGG 57 58415691 58415710 ATGAAGATGATGGTGAGGAC 57 NA Rattus norvegicus 81 Map3k10 ENSRNOG00000023521 ENSRNOT00000034609 2 1 1 80 1 84490512 84490530 GGGCATGAACTATCTGCAC 59 84485938 84490471 TCCAGAATTAGGATGTTGATGG 58 NA Rattus norvegicus 81 Zfp394 ENSRNOG00000000983 ENSRNOT00000001302 3 1 1 111 12 11182871 11182891 GAATCTCTGACCTGGGAAGAG 60 11182964 11185618 CTTTGGTTTCCAAGCCAGG 59 NA Rattus norvegicus 81 LOC102552659 ENSRNOG00000049238 ENSRNOT00000071765 2 1 1 80 10 84843142 84843160 TCAAATGGATGGCATTGGA 57 84843204 84843466 ACACAGTCACTCCATAGCT 58 NA Rattus norvegicus 81 Synpo2 ENSRNOG00000014867 ENSRNOT00000019931 1 1 1 80 2 227302431 227411710 AGTGGCAAAGATTCGAAGTC 59 227302370 227302389 TTACCATTGATGGACACCAC 58 NA Rattus norvegicus 81 Synpo2 ENSRNOG00000014867 ENSRNOT00000019931 3 1 1 80 2 227302431 227411709 GTGGCAAAGATTCGAAGTC 57 227302369 227302388 GTTACCATTGATGGACACCA 58 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115,ENSRNOT00000042781 1 2 2 80 19 28292571 28293222 CTTCTATCGCAACCTGCAC 59 28292509 28292528 CTCTCCTGCTTCAATGTGAC 59 NA Rattus norvegicus 81 Spata25 ENSRNOG00000015744 ENSRNOT00000021143 1 1 1 68 3 161294037 161294055 CTCATCTGGGTCTTCTGCC 60 161293617 161293635 TATAGAGGCCAAGGGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Sdhaf1 ENSRNOG00000047045 ENSRNOT00000074494 2 1 1 61 1 88780140 88780158 CTACTGAAGAACCCGTCGA 59 88780097 88780115 TAGGGCATCACTATCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r109 ENSRNOG00000032724 ENSRNOT00000045376 1 1 1 60 4 166993820 166993839 TTAACCAAATCCTCACCACC 58 166993861 166993880 AATAGCATGAACCAGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 1 1 1 173 12 18520757 18521016 GATGGCTGCTGTTCAAGAC 59 18521153 18521171 TACAAGACTCTGCCCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 2 5 7 80 15 5509800 5509819 GCTAGTTCAGAAGGAGAGGG 59 5508989 5509759 CGAATAAACCAAGACAGGAGG 59 NA Rattus norvegicus 81 Mta2 ENSRNOG00000019913 ENSRNOT00000027141 1 1 1 80 1 225148549 225148567 AGCGTCAGAAACTAAACCC 58 225148611 225148833 CTTTCCTTAAAGCCCTGGT 57 NA Rattus norvegicus 81 Ufc1 ENSRNOG00000003706 ENSRNOT00000004938 1 1 1 112 13 89663396 89668156 CCCTTATCCGGTATGTCGA 58 89663114 89663132 GAAGTCGTGGATGTACCAG 58 NA Rattus norvegicus 81 Vpreb3 ENSRNOG00000028394 ENSRNOT00000032290 3 1 1 62 20 13657903 13657921 CTTTCCTTCTTGTGGGAGC 59 13657061 13657079 AATTGATCGTGCAGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000086944 1 1 2 83 1 173759386 173764106 AGAGGACGTTCGTAGTTCC 59 173759321 173759339 TCAGGAGTGAAGCACTTCG 60 NA InUTR Rattus norvegicus 81 Vom1r66 ENSRNOG00000047851 ENSRNOT00000058702 2 1 1 60 4 87608783 87608802 TAAATCCTGCTCACTCTTCC 57 87608822 87608843 TGTCACTGTTACAATCATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsr3 ENSRNOG00000017858 ENSRNOT00000068336 2 1 1 96 10 14599659 14599787 GAGAACATCGATCCCTTTGAC 59 14600072 14600090 TGTCATCCGTGTCCATAGG 59 NA Rattus norvegicus 81 Fam103a1 ENSRNOG00000019426 ENSRNOT00000026385 3 1 1 99 1 143588308 143588327 AATACTTGAAACGCCCTCCT 60 143588389 143589064 TTATCTTGCAGCCAGTTGC 59 NA Rattus norvegicus 81 Tacc3 ENSRNOG00000017259 ENSRNOT00000032972 1 1 1 80 14 82339993 82340905 CAGTGACAAATAGTACACAGGA 58 82339934 82339953 AGAAATCTAAGTCGACGAGC 58 NA Rattus norvegicus 81 Samd5 ENSRNOG00000023549 ENSRNOT00000034744 2 1 1 63 1 3762662 3762680 GCATTCACCTGAGCAAACC 60 3715464 3715482 AAGTACTCTAGGATGCCGG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560175 ENSRNOG00000027756 ENSRNOT00000046208 2 1 1 86 11 61474185 61474205 AGAGATGACAGAGCATGAGAC 59 61450467 61473221 TTTCTGTGCCTCTCCACTG 60 NA Rattus norvegicus 81 Plin5 ENSRNOG00000047860 ENSRNOT00000073930 3 1 1 97 9 10959507 10959526 GCCTATCAACACTCTTTGGG 59 10959586 10960446 ATATGCTGGATCAGCTCCA 58 NA Rattus norvegicus 81 Nkiras1 ENSRNOG00000008565 ENSRNOT00000011438 1 1 1 90 15 8183633 8183651 CAAGGTTGTCGTTTGTGGG 60 8182145 8183581 GTCTTCCATGCCAATAGTGTG 59 NA Rattus norvegicus 81 Wnt9a ENSRNOG00000003066 ENSRNOT00000058327 3 1 1 66 10 45681293 45681311 CAACCTCAAGTACAGCAGC 59 45681341 45681360 CTCGCAGATCCTGCTAGAC 60 NA DesignRelaxed Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441,ENSRNOT00000082652 3 2 2 80 X 112290943 112290963 TGTGATGTCAACAATCCTCCA 60 112291001 112296792 CTTGGAAGGTTTGACTAAGACAG 59 NA Rattus norvegicus 81 LOC100912293 ENSRNOG00000046855 ENSRNOT00000073828 2 1 1 81 7 186300 186320 AGAAGTGTAAATTCGAGAGGC 58 184871 186257 ACATCCAGACTGTAGTCCC 58 NA Rattus norvegicus 81 Gli1 ENSRNOG00000025120 ENSRNOT00000009803 1 1 1 80 7 70628927 70628945 GGCTTTCATCAACTCTCGT 58 70628519 70628883 CCTAAAGAAGGGCTCATGG 58 NA Rattus norvegicus 81 Slc27a4 ENSRNOG00000014369 ENSRNOT00000019500 1 1 1 80 3 8370397 8370418 CTCTTCTATATCTACACGTCGG 58 8370459 8370580 AGCCATTCGGTAATACCTG 57 NA Rattus norvegicus 81 Uri1 ENSRNOG00000014463 ENSRNOT00000019463 2 1 1 80 1 94349472 94350251 CTGATATTTACAGAGTCTTCGTGG 59 94349415 94349433 CTCGGCTACGAGACTTCAG 60 NA Rattus norvegicus 81 Otog ENSRNOG00000010983 ENSRNOT00000068434 2 1 1 80 1 102288568 102288588 CGACACTACCGTACATTTGAC 59 102288629 102289195 CTCCGATGTACTCTTGACCA 59 NA Rattus norvegicus 81 Olr131 ENSRNOG00000048465 ENSRNOT00000042637 3 1 1 60 1 169050119 169050142 GAGCTATGTCTACTTTCTCTTTCC 59 169050082 169050105 GGTCTTGATGCTATAAATGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxa3 ENSRNOG00000014256 ENSRNOT00000019219 1 1 1 80 1 79930120 79930138 GGGCTCAGTGAAGATGGAG 60 79922626 79930078 TTCACTGGAGAATACACCTCG 60 NA Rattus norvegicus 81 AABR07016939.1 ENSRNOG00000040007 ENSRNOT00000046644 3 1 1 88 15 5320077 5320814 AGGGCAAGAGTCTGATCAG 59 5320866 5320884 TTGTGAGGTTCTCCAGACG 59 NA Rattus norvegicus 81 Sergef ENSRNOG00000011488 ENSRNOT00000015352 2 1 1 81 1 102638938 102638957 GAAGCACATTACTTCCAGGA 58 102614126 102638894 TGCCAGTTTCTGTCTTAGC 58 NA Rattus norvegicus 81 Psmb10 ENSRNOG00000019494 ENSRNOT00000026462 1 1 1 93 19 37911476 37911580 TGTGTTCCGTGATGGAGTC 60 37911401 37911422 GATAAAGTGGATCTTCTCGCAG 59 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 3 2 2 81 6 1442721 1442739 TACCGAGTTTGTTGGGAGG 59 1441004 1442677 GGGTCTTGTATCGACTTGTG 58 NA Rattus norvegicus 81 Ildr1 ENSRNOG00000002289 ENSRNOT00000003137 3 1 1 80 11 67021125 67022200 GACTACTTCTCTGCCTCATACC 60 67021066 67021087 TTCCCTCTGATTGTCACTACAG 60 NA Rattus norvegicus 81 Klhl26 ENSRNOG00000020088 ENSRNOT00000027241 2 1 1 82 16 20724062 20724080 TGGTCCTCACTGTCAACAG 59 20724124 20726385 GAACATGGCCCTAAAGTAGTC 59 NA Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513 2 1 2 84 13 78892719 78897599 TCTTGTCCAGATTCGTTCAG 58 78897646 78897664 TACACAACAGAACCAACCG 58 NA Rattus norvegicus 81 Ankrd29 ENSRNOG00000011856 ENSRNOT00000067690 2 1 1 80 14 109547700 109551947 AACTTTATGATGGAGCCACTG 58 109551989 109552007 CTGAAGACAGCAGAAGTCG 58 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455,ENSRNOT00000064332 2 2 2 80 1 78711571 78711590 CTCTGTTGTAGACTCCAGTG 57 78711631 78714758 AACATATTCCTCAGGAGTTCC 57 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000091510 2 1 2 211 6 8887114 8887134 CTTCTTGTTGACCTTCGCC 59 8887309 8887327 ACATGGACAACTCTTCCGG 60 NA DesignRelaxed Rattus norvegicus 81 Cd209a ENSRNOG00000040128 ENSRNOT00000061727 3 1 1 80 12 2346957 2347247 TTCAGTAGCTTCACAGGATACC 60 2346898 2346917 CACAGAGAACACAGTGAGGA 59 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855,ENSRNOT00000091493 3 2 2 80 3 123622082 123622457 AATGCTAAGGCTACTGTCGT 59 123622021 123622040 CACGTTACAAGTTAGGCTGG 59 NA Rattus norvegicus 81 Ccne2 ENSRNOG00000008055 ENSRNOT00000010696 1 1 1 80 5 24443031 24443049 AATACAGAATTCTGGCCGC 58 24443093 24443746 CCCATTCCAAACCTGAAGC 59 NA Rattus norvegicus 81 Olr943 ENSRNOG00000050255 ENSRNOT00000047855 1 1 1 92 7 7833042 7833064 ACAAAGCATGAGGCATTTGG 60 7833116 7833137 GCTGATGATGCAGATGTATGAC 60 NA Rattus norvegicus 81 Igflr1 ENSRNOG00000020957 ENSRNOT00000028442 3 1 1 80 1 89020579 89020599 CTGGAACTCTAACAAGAGGTG 58 89020641 89021001 TCCGCAAACTCGTAATCAG 58 NA Rattus norvegicus 81 B4galt1 ENSRNOG00000059461 ENSRNOT00000090499 2 1 1 80 5 57128473 57139098 TCAATCAGGCTGGAGACAC 59 57128411 57128431 AGTCATAGTCTTTCAAGGCCT 59 NA Rattus norvegicus 81 Hapln2 ENSRNOG00000018870 ENSRNOT00000025624 3 1 1 133 2 187398444 187401297 ATCTTGCAGTACTAAGGCG 57 187398329 187398347 TTGTGAAAGACGGTGAAGG 58 NA InUTR Rattus norvegicus 81 Isyna1 ENSRNOG00000019741 ENSRNOT00000026821 2 1 1 81 16 20590687 20590705 ATGACTTCAAGTCAGGGCA 59 20590537 20590642 ATGGACATGGTCTTGAGGC 60 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076334 3 2 3 87 13 77958976 77958994 CCTGTCTACTTCAGTGCAC 58 77954861 77958925 TCTTTCTGCAACTCCTCCA 59 NA Rattus norvegicus 81 Itfg1 ENSRNOG00000015843 ENSRNOT00000021711 1 1 1 80 19 22290512 22290533 CGGTGATCTAATTCCTGATGTG 59 22290570 22304455 CATGACAAATCTCCTCCTAACAG 59 NA Rattus norvegicus 81 LOC100911776 ENSRNOG00000048071 ENSRNOT00000074282 2 1 1 60 1 156327038 156327056 CTAGAACTGCTCAACTCGG 58 156326996 156327015 CCTTCATCTTCTCCATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh8 ENSRNOG00000007341 ENSRNOT00000055219 3 1 1 80 3 153374017 153381487 GCATATTCTCACTGTGCTGG 59 153373956 153373974 ATGGTGACAAAGACCTCCT 58 NA Rattus norvegicus 81 Otud6b ENSRNOG00000006636 ENSRNOT00000008725 1 1 1 80 5 28341181 28346245 AAAGAGACGGGAGAAGAAGG 59 28341120 28341142 CCAGATAAGTTCTCAATCTCTGC 59 NA Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 1 2 2 80 18 51845896 51859196 CTGGACACTAGTGTCATTTAGG 58 51845837 51845856 ATGAGGAGAATCACCCTCTG 59 NA Rattus norvegicus 81 Hk2 ENSRNOG00000006116 ENSRNOT00000008813 1 1 1 80 4 113571953 113573160 CTCGGATATTGAAGAGGATAAGG 58 113571895 113571913 TCCTGCAATGGATTCAGAC 58 NA Rattus norvegicus 81 LOC685596 ENSRNOG00000032204 ENSRNOT00000046035 1 1 1 60 1 94718629 94718649 CAGATCTTGCCTAAGGATCAG 58 94718668 94718689 AGGGTTCAAGGTAGAATTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pno1 ENSRNOG00000005524 ENSRNOT00000007824 2 1 1 80 14 100365538 100365558 GAAAGTTCACATTCTGGGCTC 60 100364968 100365497 GGAGGGTTTCCTAGGATGAG 59 NA Rattus norvegicus 81 Pno1 ENSRNOG00000005524 ENSRNOT00000007824 3 1 1 80 14 100365549 100369712 TGGCAGATGTGAAAGTTCAC 59 100365488 100365508 CTAGGATGAGGTTGCAAATGG 59 NA Rattus norvegicus 81 AABR07071101.1 ENSRNOG00000008363 ENSRNOT00000011090 3 1 1 85 8 100260094 100260123 GTTACTGGGTCTGCATCTG 58 100260172 100260190 TGGAACATGTAGACCACGT 59 NA Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 3 1 1 61 11 71747991 71748406 GGTTCACCTCAATGGAACTG 59 71747949 71747967 CAAGCAAATGAGGACCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Sh3d21 ENSRNOG00000024566 ENSRNOT00000045841 1 1 1 80 5 144163940 144163959 CCCAAGTCATCTCTACCCAC 60 144163794 144163898 GAGTGTTGAAGGTGGTTTGG 59 NA Rattus norvegicus 81 Tmem223 ENSRNOG00000019266 ENSRNOT00000026141 1 1 1 65 1 224971090 224971108 ATACGGGTTAGCTGTTGGT 59 224971751 224971769 GAGTAGAGGAGACCAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem164 ENSRNOG00000012787 ENSRNOT00000068431 1 1 1 80 X 113949687 113949707 CTTTAAGTTCGCCACCAAGAC 60 113949749 114016373 GCCAGGAGGAAGATATGCA 59 NA Rattus norvegicus 81 Mkx ENSRNOG00000018938 ENSRNOT00000025623 1 1 1 81 17 60541823 60548564 TAGTGCAGGTGTCAAATTGG 59 60548608 60548626 AAGGCCCAACTTAAATCCG 58 NA Rattus norvegicus 81 Mkx ENSRNOG00000018938 ENSRNOT00000025623 2 1 1 82 17 60541823 60548564 TAGTGCAGGTGTCAAATTGG 59 60548608 60548627 TAAGGCCCAACTTAAATCCG 58 NA Rattus norvegicus 81 Tcp11l2 ENSRNOG00000007587 ENSRNOT00000010024 2 1 1 80 7 24864809 24864829 GTTCAAGCTAATCTTGTCGGT 59 24859929 24864769 GATCCGTTTATCCATCAAGGC 59 NA Rattus norvegicus 81 Tcp11l2 ENSRNOG00000007587 ENSRNOT00000010024 3 1 1 80 7 24864808 24864829 GTTCAAGCTAATCTTGTCGGTC 60 24859929 24864769 GATCCGTTTATCCATCAAGGC 59 NA Rattus norvegicus 81 Atxn7 ENSRNOG00000007246 ENSRNOT00000010103 3 1 1 81 15 12434766 12440035 ACTTGCAAGACACATTCCT 57 12434703 12434721 TGTGCTCGGCTAATAACAC 58 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690,ENSRNOT00000085074 1 2 2 80 10 65667712 65667730 AACGATAAGATGCCCTGGA 59 65666748 65667668 CAGACCTGATTGCTCACTG 58 NA Rattus norvegicus 81 Ago3 ENSRNOG00000034269 ENSRNOT00000042371 1 1 1 80 5 144413614 144413632 TAGACAAGCCAATCAGCAC 58 144412660 144413573 CAGGCGTATATTTCATAGAGGG 58 NA Rattus norvegicus 81 Abca2 ENSRNOG00000014268 ENSRNOT00000020339 3 1 1 80 3 2666642 2666755 CATCTTTCTAGACGAGCCC 57 2666798 2666817 TTGATGAGGTCCAGAATGAG 57 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 2 2 2 80 14 45849657 45849675 GTAAGCTTTCTAGCCACCA 57 45848298 45849616 GGTAATATGATAGCCGTACTCC 58 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000081509 3 1 2 87 1 163554750 163554772 TAGAGTCAGAACTAGTTGCTGAG 60 163551365 163553881 CGATGGCTGACTAGAAGGG 60 NA Rattus norvegicus 81 Fus ENSRNOG00000023360 ENSRNOT00000031891 1 1 1 80 1 199424737 199424755 GAGGATTTCCCAGTGGAGG 60 199424795 199425875 TCTCACATGTAGGATTAGGACAC 60 NA Rattus norvegicus 81 Rrp15 ENSRNOG00000002450 ENSRNOT00000003359 1 1 1 80 13 105163733 105163752 AAACAAAGAGCTGGAGAAGG 58 105161856 105163691 TCCCGCTTCTTATCAATCTG 58 NA Rattus norvegicus 81 Atp5j2 ENSRNOG00000027049 ENSRNOT00000033537 1 1 1 80 12 11191843 11195158 GTCTATCGTGCCATTGAAGG 59 11195199 11195219 AAATCCCGCATCAATATCCAG 59 NA Rattus norvegicus 81 Xxylt1 ENSRNOG00000001729 ENSRNOT00000002356 1 1 1 80 11 73227680 73270509 TGCCCAAAGAGATCCTGAG 59 73270553 73270571 ACTCCTCAAACAGCTCTCG 59 NA Rattus norvegicus 81 Mettl7a ENSRNOG00000001376 ENSRNOT00000052075 2 1 1 102 7 141974038 141974056 AGCCAAGAGAAGATCCTGC 60 141980225 141980243 AGTAATTCCAGGTGGACCG 59 NA DesignNoJunction Rattus norvegicus 81 Havcr1 ENSRNOG00000007243 ENSRNOT00000009573 3 1 1 80 10 31830830 31833744 AGACTCACAAACCAGAAATCAC 59 31833780 31833803 CAGGAGTATATGATGGAGTTTCTG 59 NA Rattus norvegicus 81 Fxyd1 ENSRNOG00000021079 ENSRNOT00000028624 3 1 1 81 1 89485983 89486428 CACCTACGATTACCACACC 58 89485920 89485939 AAGGATGATAAGGATGCCCA 59 NA Rattus norvegicus 81 RGD1311595 ENSRNOG00000026942 ENSRNOT00000039428 1 1 1 80 1 247905821 247905839 AAGCCGAGCTCAGTAAGTC 60 247904668 247905779 TCATATCATCTGAGTCCTCGC 59 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167,ENSRNOT00000074985 1 2 2 83 1 81343469 81343488 TGTTCCTACGAAGAGACGTC 59 81343535 81344484 TTCCCAGCACATCTAAGCC 60 NA Rattus norvegicus 81 Kpna7 ENSRNOG00000042296 ENSRNOT00000038175 2 1 1 80 12 11369041 11372557 AGAACTCAATGTCTTGACCC 58 11372600 11372618 ATCACCATTTGGGTTTGCT 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 3 4 4 80 1 50828654 50828673 ACAAGAACTTATGGAGCAGC 58 50828715 50864545 TGCTAATTTCTTCGTCCAGC 59 NA Rattus norvegicus 81 Josd1 ENSRNOG00000014440 ENSRNOT00000019612 1 1 1 80 7 120908491 120908509 GTGAATGTCATCATGGCGG 59 120908313 120908447 AATAACACCCACGTCCCTG 60 NA Rattus norvegicus 81 Hmgb1 ENSRNOG00000029813 ENSRNOT00000047163 2 1 1 81 12 7085862 7086028 GAGAGGTGGAAGACCATGTC 60 7086069 7086090 CTCTTTCATAACGAGCCTTGTC 60 NA Rattus norvegicus 81 Trit1 ENSRNOG00000014274 ENSRNOT00000019587 2 1 1 80 5 140712706 140712726 CACTCTGGCTCTTCAATTAGG 59 140712767 140739822 TCTAGCCCTTCATAGACCTG 58 NA Rattus norvegicus 81 LOC100362965 ENSRNOG00000022595 ENSRNOT00000034599 3 1 1 60 17 61332341 61332362 GAGAAGAACTACTGAACAGCAC 59 61332302 61332321 TGTCCTTCTACGTTTGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911238 ENSRNOG00000049229 ENSRNOT00000071796 2 1 1 94 12 8976651 8978442 GTTTCCAAGATGAACGCCA 59 8978500 8978518 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 LOC678798 ENSRNOG00000022737 ENSRNOT00000039130 1 1 1 80 1 201811306 201812877 AGGAGTCAGAAGAAAGACCA 58 201812920 201812938 CCTGATGGAGGATCTCCAC 59 NA Rattus norvegicus 81 RGD1561017 ENSRNOG00000038474 ENSRNOT00000058627 3 1 1 80 10 41545067 41545865 TTTGTGAGGGACTCATACCTC 59 41545007 41545025 TGTTTCCAGGAAGCTCCAG 60 NA Rattus norvegicus 81 Golph3 ENSRNOG00000012186 ENSRNOT00000017276 3 1 1 105 2 62381198 62386859 ACTTAGTGGTGAGACGTGG 59 62386928 62386946 CTCTGTCGTCAGTACACCC 60 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000067491 2 1 2 80 7 92241624 92241642 TTCAGGAAGCTACGACTGG 59 92241685 92255744 TTTGAGTTTCTCCACAGGGA 59 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121,ENSRNOT00000083127 2 2 2 81 4 130403290 130414380 CAATCACAACTTGATTGAACGG 59 130414419 130414440 TGACTTGGGAATCAAAGTACCT 60 NA Rattus norvegicus 81 St8sia1 ENSRNOG00000014018 ENSRNOT00000018999 1 1 1 80 4 177106359 177114991 TTGTCATGCGGTGTAACCT 60 177106297 177106316 TAGCTGTCACCAACTGAGTC 60 NA Rattus norvegicus 81 Cep68 ENSRNOG00000027282 ENSRNOT00000039523 3 1 1 84 14 104514881 104516167 TATGGGAAGCCAAATGGAG 57 104514815 104514835 AACGGTTATAGTTCCAAGGAC 58 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 1 2 3 80 13 77639573 77639594 TATAGTGAATCTCGTAGCTGTC 57 77639633 77640776 GGAGGATCAATTCCTGTAGTG 58 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438,ENSRNOT00000056047 2 2 2 80 20 27287086 27289978 AATAGCACAGACGATATCCTACC 60 27287028 27287047 TTCTCAAACTCCGGTAGGAC 59 NA Rattus norvegicus 81 Gkn1 ENSRNOG00000008838 ENSRNOT00000012218 1 1 1 85 4 119143273 119143977 GATTCCAGGACCAAACCAG 58 119143206 119143224 TTTCACAGAAGGACATGCG 59 NA Rattus norvegicus 81 Rb1 ENSRNOG00000016029 ENSRNOT00000021752 3 1 1 80 15 55100427 55100448 ACTCTGTTTCAGCATACATTGG 59 55094084 55100392 CATAGAACACATCATAATCTGGTCC 60 NA Rattus norvegicus 81 Srpx2 ENSRNOG00000003715 ENSRNOT00000005020 1 1 1 80 X 104751499 104751793 TGTATGTGTAGACATAGATCCACC 60 104751831 104751850 GCAGTTAGTTTCTCTGGCTC 59 NA Rattus norvegicus 81 Tmem186 ENSRNOG00000027087 ENSRNOT00000030290 3 1 1 101 10 7077559 7077578 GAGTTAGCGCATTAACCTCC 59 7077642 7078928 GAAGGAGGAAAGCCATGAG 58 NA InUTR Rattus norvegicus 81 Olr781 ENSRNOG00000048229 ENSRNOT00000045743 1 1 1 60 3 103151640 103151659 ATTCTCTGGTTCAACTGGCT 59 103151599 103151617 TCCAACACATTTCGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csmd3 ENSRNOG00000004937 ENSRNOT00000057108 3 1 1 80 7 86681798 86684378 TGGATGGATTTGTTTCTGCT 58 86681737 86681756 ATTGCCCATAATCTTTGCCT 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 3 4 4 80 1 265551780 265551801 CCATAGATGATAGACTGAGCTG 58 265551530 265551740 CAAGCATTTCCTCCTTTGTG 58 NA Rattus norvegicus 81 AABR07040936.1 ENSRNOG00000050265 ENSRNOT00000072094 2 1 1 134 X 115208894 115208917 ACAGAAACGATTACTTGGCA 58 115209013 115209032 CCTTCTTAAAGTCCTCTGCC 58 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520,ENSRNOT00000083269 3 2 2 93 15 104101940 104101959 GAAGTGTACCAAAGTCGGAG 58 104102015 104102121 CATGGAACACAGACCTGAC 58 NA Rattus norvegicus 81 Chst14 ENSRNOG00000045997 ENSRNOT00000073587 3 1 1 60 3 110735229 110735250 CCAGAAAGTCTACATTACCACC 59 110735270 110735289 GTAGCACATCTTGAAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppib ENSRNOG00000016781 ENSRNOT00000022828 1 1 1 80 8 71722383 71722401 TCCATCGTGTCATCAAGGA 58 71722443 71724390 CATAGATGCTCTTTCCTCCTG 58 NA Rattus norvegicus 81 Ppib ENSRNOG00000016781 ENSRNOT00000022828 2 1 1 80 8 71722381 71722400 GTTCCATCGTGTCATCAAGG 59 71722441 71724388 TAGATGCTCTTTCCTCCTGTG 59 NA Rattus norvegicus 81 Rab11fip4 ENSRNOG00000014135 ENSRNOT00000018986 2 1 1 80 10 67046150 67047033 CTCGAGATGAGCTAATGGAGG 60 67047070 67047093 GGATAATCTTGTCCATGTACTGTC 59 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429,ENSRNOT00000080485 3 2 2 80 3 150382691 150384236 GCCAAGATCAAGTTAAAGAGCA 59 150384277 150384295 AAGGGCATCAATGTTGGAC 58 NA Rattus norvegicus 81 Preb ENSRNOG00000007141 ENSRNOT00000009565 2 1 1 80 6 26785840 26785967 CTGATGGCAAGTTGGTTACTG 60 26786009 26786027 ACTGTAGCTGTGTCACCAG 59 NA Rattus norvegicus 81 Otulin ENSRNOG00000012017 ENSRNOT00000016111 3 1 1 80 2 80270814 80270832 TCAAATGACCCTGAACAGC 58 80270086 80270773 GAACATTTCAACCTGTTCAAGG 59 NA Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 2 1 1 67 3 162034164 162034182 CTGTACAGGGAGGTGATGC 60 162033686 162034134 GGTTTGGTTATACTGTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Ergic3 ENSRNOG00000031085 ENSRNOT00000045484 2 1 1 83 3 151562685 151562819 GAAACACAGGTCCTTCACG 59 151563099 151563117 GAGTCAATGAGTCCAGCCA 59 NA Rattus norvegicus 81 Rps14 ENSRNOG00000018774 ENSRNOT00000059501 2 1 1 81 18 56044504 56045235 GATCTTTCTGGCAAGGAAACC 60 56045276 56045296 CATACGGAGAGGACTCATCTC 59 NA Rattus norvegicus 81 Cep78 ENSRNOG00000014041 ENSRNOT00000018951 1 1 1 80 1 233211556 233211667 GACTAGTCTAACAAAGGGATTGAG 59 233211499 233211517 CCTCCATCTCCAACTGGAC 60 NA Rattus norvegicus 81 Smad6 ENSRNOG00000009173 ENSRNOT00000012155 1 1 1 85 8 68953283 68953306 CCGATTCTACATTGTCTTACACTG 60 68898698 68953239 AGACATGCTGGCATCTGAG 60 NA Rattus norvegicus 81 Gnas ENSRNOG00000025889 ENSRNOT00000035916 3 1 1 177 3 172376062 172376080 CACTAATGGGTGACTCCGT 59 172427180 172428037 GGGTAATAGACTCCATCGCT 59 NA InUTR Rattus norvegicus 81 Ergic1 ENSRNOG00000003508 ENSRNOT00000005273 1 1 1 80 10 16862229 16867077 TGCCATTATCTCCATCTGCT 59 16862168 16862188 ACTTCTGTCGTGATGAATCCA 60 NA Rattus norvegicus 81 Tbx18 ENSRNOG00000010685 ENSRNOT00000014657 2 1 1 80 8 95364104 95369912 GAGGAACAGAATGGGTTTGG 59 95364043 95364063 TCTTCAAAGGTGAGAGTTCGT 59 NA Rattus norvegicus 81 C1qc ENSRNOG00000012804 ENSRNOT00000017065 2 1 1 170 5 155258042 155258335 ATGCTCAGGATGGTTGTAGG 60 155257891 155257909 CTGAAGTCCATCATGCCCA 60 NA InUTR Rattus norvegicus 81 Isca2 ENSRNOG00000012085 ENSRNOT00000016089 1 1 1 80 6 108488978 108488996 AAACAACGTCCTCCATTCC 58 108489040 108489173 TGATTTCCAGAAGCCTCTG 57 NA Rattus norvegicus 81 Cox6c ENSRNOG00000010807 ENSRNOT00000014407 1 1 1 110 7 74731392 74734382 CCTATAAGTTTGGCGTGGC 59 74731300 74731318 TCTGAAAGACACCAGCCTG 60 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 1 3 3 80 10 3342561 3356733 CATATAAGACTGGTCTGATGTACTG 59 3356938 3356956 ATGCTGTCCTCCAGTTCAC 60 NA Rattus norvegicus 81 Rbm22 ENSRNOG00000019235 ENSRNOT00000026087 1 1 1 80 18 55834271 55834290 ATAAGACGATCACCACACTG 58 55834330 55836126 ACTGGTAGAAATGATTCCTGAG 58 NA Rattus norvegicus 81 Olr194 ENSRNOG00000046579 ENSRNOT00000042936 2 1 1 60 1 170034219 170034237 TTTCCTATGCCCTCATCCT 58 170034177 170034196 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683422 ENSRNOG00000047632 ENSRNOT00000072438 3 1 1 88 15 47470999 47472106 TCGACCAAATAAACAACGCT 59 47472156 47472175 CTTGTCCACTTTCTCATGCT 58 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 2 2 2 81 6 66984471 67083531 TTTATCCAGGTACTACTGAGAGG 59 66984412 66984433 TCTGCAATGAATCCATGAACTG 59 NA Rattus norvegicus 81 Hmx3 ENSRNOG00000020637 ENSRNOT00000028007 3 1 1 141 1 203510124 203510745 CCAGAAGCCTCTGAGAAGG 60 203510849 203510868 CTTCCAGAATGATCTCGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp641 ENSRNOG00000032447 ENSRNOT00000045473 2 1 1 124 7 139905236 139905254 CTGTCCCTTCAGGAGAAGG 59 139903288 139904492 ATAGTTACTAGGCCCTGGGA 59 NA Rattus norvegicus 81 LOC499770 ENSRNOG00000025711 ENSRNOT00000030623 3 1 1 80 3 8746474 8746496 GATTGATAAGAAACTGGACCCTG 59 8746322 8746435 TTGTACGTCTTGCATTCTGG 59 NA Rattus norvegicus 81 LOC690206 ENSRNOG00000013566 ENSRNOT00000018127 3 1 1 125 5 155794286 155796644 AAGAGAAAGGGTAGCCAACC 60 155796732 155796750 GGATGTGTTGTTGGGTTGG 59 NA InUTR Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 1 1 1 74 1 7305885 7305903 ACAGCAACAACAGCAACAG 60 7305941 7313094 CTCTGTTGCTGTTGTTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Hcfc1r1 ENSRNOG00000003542 ENSRNOT00000004702 2 1 1 61 10 12994748 12994766 GACTCTTGGCCTGGATACC 60 12995268 12995287 CCATGTTCTCCTCAGACAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 2 1 1 71 1 220417141 220417403 TTTCAATCGAATCAGCCAGG 59 220417437 220417455 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Pde6a ENSRNOG00000017816 ENSRNOT00000024171 2 1 1 80 18 56590627 56592404 CCTCTACCAGATGAAATCACAG 58 56592444 56592463 CCAAACTCCAAATGATGCCT 59 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 2 2 2 80 14 86473691 86474249 CAGATGTCCTGCCTAACCT 59 86474293 86474311 AGCAGTTGACGACAATCCA 60 NA Rattus norvegicus 81 Epb42 ENSRNOG00000011649 ENSRNOT00000015556 1 1 1 80 3 112982117 112982136 TTCCGGCAAGAAACAATACC 59 112978868 112982077 TGCAGAAATACAGCATCATCTC 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 3 2 3 80 5 173257587 173257817 ACATTCCATGGAGCATGTG 58 173257859 173257879 ACATCTCTGATTCGTCTTGGA 59 NA Rattus norvegicus 81 Rad21l1 ENSRNOG00000022335 ENSRNOT00000055455 2 1 1 80 3 147172909 147173838 CAGCACATTCTAGATCCCTC 58 147172848 147172866 CACATCCTTCCCATCTTGG 58 NA Rattus norvegicus 81 Hypk ENSRNOG00000015703 ENSRNOT00000021091 2 1 1 84 3 113424597 113424755 GGAAGATCTGGAGTTGATAATGAC 59 113424798 113424816 CACATTGCCCATGTGTTCC 60 NA Rattus norvegicus 81 Olr526 ENSRNOG00000050654 ENSRNOT00000045439 3 1 1 60 3 74412012 74412032 TGCTTCAATGTCCTATGACAG 58 74412051 74412072 GATAACTGGGTAGTGTAAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl43 ENSRNOG00000014890 ENSRNOT00000020020 1 1 1 154 1 264755900 264756030 TGGCCGAATACCTTAACGG 60 264755764 264755782 CTGGATGCTAGGGTTGTCC 60 NA Rattus norvegicus 81 Ift43 ENSRNOG00000010194 ENSRNOT00000013560 1 1 1 82 6 109993709 109994980 AAGAAATGGAAGATCGCCG 58 110015366 110015384 CAGATCTGGGATCACAGGG 59 NA Rattus norvegicus 81 Mpv17l2 ENSRNOG00000019394 ENSRNOT00000026271 3 1 1 93 16 20434379 20434545 ACTTCTACAAGGCCGACTG 59 20434599 20434620 CCATTGATATAGGTGACTCGGA 59 NA Rattus norvegicus 81 Rn60_12_0203.4 ENSRNOG00000058453 ENSRNOT00000089017 1 1 1 60 12 18254399 18254419 CCAGTACCTGAGCCTATAACC 60 18254359 18254379 GAAGCAGTATTGATGATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203,ENSRNOT00000083171 2 2 2 80 3 57053285 57053304 CGTAAGAGGCATACCTCCAG 60 57051574 57053242 TTCGGTCGAACAGATGAGG 60 NA Rattus norvegicus 81 Drd5 ENSRNOG00000005338 ENSRNOT00000007074 2 1 1 60 14 77220984 77221003 CCTTCGACATATTCGTCTGG 58 77220943 77220964 GCATAGATGATGGGATTGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calhm2 ENSRNOG00000020325 ENSRNOT00000027526 1 1 1 80 1 266909268 266911260 TATGAGTCCCAGCTCTTTGG 59 266909207 266909227 GTAATGCTTGAAGCACTTGGT 60 NA Rattus norvegicus 81 Slitrk3 ENSRNOG00000009821 ENSRNOT00000013009 2 1 1 79 2 170460451 170460469 GAACCTCGGAGATCCTGAG 59 170455659 170455678 GCATCTCAGTTATGGTTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 1 2 2 80 16 6070155 6070176 TGGAAACAGATACATGGTTCTC 58 6069754 6070115 GTCCTCGTCAGTTTGTTCTC 59 NA Rattus norvegicus 81 Olr282 ENSRNOG00000047675 ENSRNOT00000044753 2 1 1 60 1 173455578 173455598 GAATCCACTAATCTACAGCCT 57 173455538 173455558 CCATAATTTCAACACAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yod1 ENSRNOG00000025704 ENSRNOT00000030476 3 1 1 99 13 47441494 47442318 ATCCAGTCAGGTGACATGC 60 47442378 47442399 TTTCCCTGACATAACTAGGAGC 60 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 2 2 2 80 18 64053894 64057240 ATGTTTAAGATCGCCACGC 59 64053832 64053852 ATGACTTCGCAGATACTTCAC 58 NA Rattus norvegicus 81 RSA-14-44 ENSRNOG00000042954 ENSRNOT00000068400 2 1 1 60 4 96832110 96832131 AGTTTCCTGATGTTTATGTGCC 59 96832152 96832170 TCCACTTCGATATCAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl9 ENSRNOG00000022242 ENSRNOT00000003082 3 1 1 80 14 17230034 17230055 CCACTACAAATCCCTCAAAGAC 59 17230093 17232365 TTCAGTGTAGCGATGATTTCAG 59 NA Rattus norvegicus 81 Gip ENSRNOG00000006306 ENSRNOT00000008481 2 1 1 88 10 83841124 83844071 GAGGTTGAGTTCCGATCCC 60 83844119 83844141 CTGTAATCACTGATGAAAGTCCC 59 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 2 2 2 80 5 137672722 137672741 ACTGAGGTCCTTCAGAAGAG 59 137672783 137673035 ATCAGAGAAGCCTTTCTGGT 59 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 2 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133602 100134529 TGGTAATTGTTGCTAGAGCA 57 NA Rattus norvegicus 81 Ptgdrl ENSRNOG00000031535 ENSRNOT00000042545 2 1 1 89 15 18095199 18095217 AATCCTTTGGAGGAGCTGG 59 18089299 18095149 AGCACGATAAATTAAAGGCAGG 60 NA Rattus norvegicus 81 Ube2n ENSRNOG00000058053 ENSRNOT00000089874 2 1 1 87 7 36638811 36638831 GCTCCTAATCCAGATGATCCA 59 36638878 36639468 ATGCTCTTGCTGTTTCTATGG 59 NA Rattus norvegicus 81 Rspo1 ENSRNOG00000009656 ENSRNOT00000012811 2 1 1 96 5 143005918 143005936 TGTACTTACACAAGGGCCG 60 143005994 143006311 ATTTCACATTGTGCAGGACTG 60 NA Rattus norvegicus 81 Tbrg4 ENSRNOG00000052477 ENSRNOT00000089133 1 1 1 80 14 86881742 86881760 TACCACCTGGTACAGAAGC 59 86881434 86881700 GAAACTGAGCTTACCATAGGC 59 NA Rattus norvegicus 81 Slc50a1 ENSRNOG00000020554 ENSRNOT00000027878 1 1 1 85 2 188586874 188587000 CACGGATGTCAACAACCTG 59 188586807 188586825 CTGCACCCACAGTATTGAC 59 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000009158,ENSRNOT00000044161 3 2 2 81 13 112078081 112079566 CAGACACCCTTGGATTGAC 58 112078018 112078039 AAAGTTCTTCTGAATCTGGAGG 58 NA Rattus norvegicus 81 Riiad1 ENSRNOG00000037310 ENSRNOT00000056449 3 1 1 80 2 195711838 195712388 GAGATTTCAAGATCCAGACTCG 59 195711779 195711797 AGCTGCTAATGAGAAGGGA 58 NA Rattus norvegicus 81 MGC94891 ENSRNOG00000011243 ENSRNOT00000015010 3 1 1 80 1 52330839 52332851 AGAGGAAAGACAGATTCTGTGG 60 52330780 52330799 CCAAGCATTTCAGAGTCGTC 59 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076431,ENSRNOT00000035113 3 2 4 81 13 79031214 79032057 GCCAAGACATTAGGCTTGTG 60 79032098 79032119 TAATCTCCTGTATGTGTTCGGT 59 NA Rattus norvegicus 81 LOC685221 ENSRNOG00000027305 ENSRNOT00000038594 1 1 1 60 6 108831185 108831204 TCCCATTGTGATGAAGAGTG 58 108832632 108832655 GTCATCAAATCCTAGAAGTGTACC 59 NA DesignNoJunction Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 3 2 4 96 X 71971512 71972296 ACTGTGATACACAGGTCCA 58 71972356 71972374 TCTTCACTGGTGAATGGGA 58 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 1 2 2 80 X 105178452 105178470 CTTCTCTTGTCGGTCACAG 58 105178511 105179103 AGAAGAAGTGGCTTTATCTCAG 58 NA Rattus norvegicus 81 Olr790 ENSRNOG00000050791 ENSRNOT00000046527 3 1 1 60 3 103400142 103400160 GCATGATGGGAAACTCCCT 60 103400100 103400121 GGAGAATGTAAGTGAGGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr3 ENSRNOG00000042605 ENSRNOT00000064917 3 1 1 60 1 59801537 59801556 CAAGATCCACAGAAGAGCAC 59 59801496 59801514 AACTGCTGTAAGGACTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab27b ENSRNOG00000012176 ENSRNOT00000016369 3 1 1 93 18 68494058 68494077 TTCTTCAGAGATGCCATGGG 60 68490578 68494002 CCTGCAGTTGACTCATCCA 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395,ENSRNOT00000088029,ENSRNOT00000080406 1 3 4 80 20 3121981 3121999 GTGCTATGGCCATCTTAGG 58 3122041 3122416 CATAATCTCTGTCTCCTCCCT 58 NA Rattus norvegicus 81 Hoxa3 ENSRNOG00000006281 ENSRNOT00000008447 1 1 1 144 4 82140879 82140897 AAGGCAGAACACTAAGCAG 58 82139385 82139403 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000044726,ENSRNOT00000085175 2 2 2 80 14 92028104 92028316 GAATTCGGTGATTCACAGGAC 59 92028044 92028063 TGTTGCTTGATGATCCTGTG 59 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000068134 2 1 2 80 14 14382871 14382890 ATTGACCTTCTGGACATCCG 60 14374250 14382831 AGAAGTATCTGATTGGATGGCT 59 NA Rattus norvegicus 81 Ifnb1 ENSRNOG00000006268 ENSRNOT00000008224 3 1 1 60 5 106865559 106865579 CTTCAAGATCCCTATGGAGGT 59 106865519 106865539 AAAGGCAGTGTAACTCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ksr2 ENSRNOG00000028630 ENSRNOT00000046190 1 1 1 80 12 44636810 44688767 GCCAATTTCTCTGCAAACAC 59 44636749 44636768 TTTGATGGAATTGCCAAGGT 58 NA Rattus norvegicus 81 Vom1r81 ENSRNOG00000048807 ENSRNOT00000044913 1 1 1 60 4 88048578 88048597 AATCAGTCCCAGTACCTCAC 59 88048619 88048638 AGTCAGGTACGTCTTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr417 ENSRNOG00000007954 ENSRNOT00000010450 1 1 1 60 3 20966013 20966033 TCTATACCCAGAGACAGACCA 59 20966055 20966073 AGGAGGAAATAGAGCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 2 3 3 80 4 155561269 155561287 TTACTGTTGCCACAATCGG 59 155560837 155561228 AGTCCTTAATGATTGTCTCAGG 58 NA Rattus norvegicus 81 Exosc4 ENSRNOG00000012348 ENSRNOT00000016464 1 1 1 88 7 117392240 117392359 GACATTTATGTGCAGGTGCT 59 117392410 117392428 ATCCCAGCATCCATCACTG 60 NA Rattus norvegicus 81 Ncoa7 ENSRNOG00000014004 ENSRNOT00000018849 2 1 1 80 1 29369039 29369059 GGTTGAGAAGGAAGAACTGAC 59 29369100 29377173 TCAACTGTGATGATCTCCCA 59 NA Rattus norvegicus 81 Ttll6 ENSRNOG00000004939 ENSRNOT00000006594 2 1 1 80 10 83991709 83993422 TTCCCAAGACACAATACCC 57 83993465 83993484 CCTCCATTCCTTTCTTCCTG 58 NA Rattus norvegicus 81 RGD1565660 ENSRNOG00000046931 ENSRNOT00000050518 2 1 1 81 14 15681808 15681828 TTCAATTGTCTCCAGCATCTC 58 15681871 15682649 TCATCAGGCTCCTGAAGAC 59 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193 1 1 2 80 2 232106519 232106537 TCTGACACCACCTTCTACC 58 232106581 232106813 GCACTCAGGAAGTAACAGC 59 NA Rattus norvegicus 81 AC136013.2 ENSRNOG00000058724 ENSRNOT00000090938 1 1 1 93 14 17613995 17615308 GACTGACATTTCATGTATTCCC 57 17613923 17613942 CAAATGCCTGCAGTATTCAC 58 NA Rattus norvegicus 81 E2f6 ENSRNOG00000004449 ENSRNOT00000060499 3 1 1 80 6 42100136 42100154 ATCACCAATGTCTTGGACG 58 42100196 42101878 GTTCAGGTCAGATCCTATCCA 59 NA Rattus norvegicus 81 Ccdc68 ENSRNOG00000021381 ENSRNOT00000039702 1 1 1 80 18 68423747 68423765 CGGAATCGCATGTTTAAGG 57 68423807 68427362 CTGAACATTTCCAGATTGCTC 58 NA Rattus norvegicus 81 Ddit4l2 ENSRNOG00000010047 ENSRNOT00000013661 1 1 1 80 2 242882850 242884549 CTGCTAAGTGATTTCGACTACTG 59 242884587 242884607 GCATGTTGTCTCTTCAAACAC 58 NA Rattus norvegicus 81 Pramef25 ENSRNOG00000027000 ENSRNOT00000037478 2 1 1 80 5 162415267 162415567 ATAAACTGCTCCAGTGTCTG 58 162415206 162415225 ACTCCAAGTCTGATTGTGAG 57 NA Rattus norvegicus 81 Tmem37 ENSRNOG00000047714 ENSRNOT00000074471 3 1 1 290 13 36101319 36101337 CTCGAGGAATCTGCATCCA 59 36095445 36095463 CAAAGAAAGACCGGTGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Camkv ENSRNOG00000058938 ENSRNOT00000090239 1 1 1 80 8 116726908 116727149 CCCATGAATGGATTTCTGGC 59 116727190 116727210 CAAAGTTCTTCTCGATCTGGG 59 NA Rattus norvegicus 81 Grb7 ENSRNOG00000006990 ENSRNOT00000009299 2 1 1 80 10 86408001 86408123 GTGGATGGTGTATTCCTGGT 60 86408166 86408184 GACTTTCTGCAGATGGCAC 59 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971,ENSRNOT00000084970 1 2 2 81 19 37669297 37669317 ACCAATGATGACAGTTTGCAC 60 37669360 37669591 AGTCACCTTCCCGTTTCTG 60 NA InUTR Rattus norvegicus 81 Ech1 ENSRNOG00000020308 ENSRNOT00000027537 3 1 1 81 1 87010713 87010735 GATATCTAAAGACTCCGACTGTC 58 87010775 87013581 GTCCATGAGGTCAATACCTG 58 NA Rattus norvegicus 81 RBMY ENSRNOG00000060963 ENSRNOT00000092110 2 1 1 80 Y 389698 390018 AAGTTATGGAAGCTTCCATGAG 59 390055 390077 GAGCTACTATAGTCATCATAGCG 58 NA Rattus norvegicus 81 RBMY ENSRNOG00000060963 ENSRNOT00000092110 3 1 1 80 Y 387453 388036 CTGAGAGGACGAGAACCAC 60 388075 388098 TTCATCTCTTCTGGAAGATACTGG 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 3 2 3 92 10 13306215 13306344 GAGCCCAGAATATTCTGGG 57 13306400 13306418 TTAAGAATATCCGCAGGCC 57 NA Rattus norvegicus 81 Btbd17 ENSRNOG00000003109 ENSRNOT00000004191 1 1 1 87 10 103336240 103337504 GTTCATCAGGTATTTGTACTGTGG 60 103336176 103336194 TACTCGGTATTTGGTGGCC 60 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000053884 ENSRNOT00000071568 3 1 1 183 4 82299918 82299936 GCAACTTCAAGTTCGGACG 60 82298343 82298361 ATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Srrm2 ENSRNOG00000058561 ENSRNOT00000091287 2 1 1 80 10 13162117 13162236 GATCAACAGAGCAGTGAGC 59 13162280 13162298 CTCCTTCCTCCTCTTGTGG 59 NA Rattus norvegicus 81 RGD1561195 ENSRNOG00000030383 ENSRNOT00000046725 1 1 1 60 5 83647781 83647800 GCATCCGAGTACATTTGTCC 59 83647740 83647761 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a19 ENSRNOG00000026501 ENSRNOT00000036714 2 1 1 80 1 32210100 32210118 ATCTTTCTCATCCGTGGCT 59 32210161 32210512 CAGCTCTGTGATATTGGGTG 59 NA Rattus norvegicus 81 Olr1626 ENSRNOG00000012497 ENSRNOT00000016667 2 1 1 60 15 26856111 26856131 AATACTGCTGGGTAACTTCCT 59 26856071 26856090 AGTGTGAAGTCGTGAGTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1626 ENSRNOG00000012497 ENSRNOT00000016667 3 1 1 60 15 26855594 26855615 TACATTTGTCTTCTTGGTCGTC 59 26855555 26855578 GGAACGATTCCTAACAGTAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snip1 ENSRNOG00000024889 ENSRNOT00000037510 2 1 1 80 5 143064750 143067952 TCAAAGTGAAGCAGGAACG 58 143067995 143068014 GCTCCTGTTCTGATAACTCC 58 NA Rattus norvegicus 81 RGD1561381 ENSRNOG00000003606 ENSRNOT00000004798 1 1 1 60 14 21163864 21163882 GGATTCGTGCTTCTCACTG 59 21163906 21163924 GGTTGATGGCTAGGTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559575 ENSRNOG00000032396 ENSRNOT00000046438 2 1 1 80 10 34234126 34241767 TGACAAATAAGCATCCTCCAG 58 34234066 34234085 AAAGTTGAGCCGTTAAAGGA 58 NA Rattus norvegicus 81 Olr425 ENSRNOG00000007986 ENSRNOT00000010501 1 1 1 60 3 21148277 21148298 TGAACTGGCTATATTCTTGGAG 58 21148238 21148258 TACAATAAGGGAACAAGGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912491 ENSRNOG00000050162 ENSRNOT00000074431 2 1 1 60 5 137547328 137547348 CTCGTCTACACTATCTTTGCT 57 137547370 137547388 AGTGGTTGATCTTGTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cryba2 ENSRNOG00000017996 ENSRNOT00000024283 3 1 1 223 9 82154033 82154244 CACTCACTTGCGACATGAG 59 82153170 82153189 TAGAATGAACTGCTGTCCCT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Slc30a1 ENSRNOG00000004749 ENSRNOT00000006340 3 1 1 61 13 110678557 110678575 GGCTAACACCAGCAATTCC 59 110678598 110679882 TTCTCAACTTCTCTGGCTCTG 60 NA DesignRelaxed Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159,ENSRNOT00000044278 3 2 2 80 6 27397895 27397914 ACTTCGTCTTTGACTTCCAC 58 27397954 27398411 GGTTCTTAGAATGGATAACCGA 58 NA Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 1 2 2 80 10 43751524 43751542 GATCTTTCCGCACTAGCAG 58 43751585 43751713 CACATATCTCACACTGCAGG 59 NA Rattus norvegicus 81 Sprr1a ENSRNOG00000024028 ENSRNOT00000012174 1 1 1 165 2 192669912 192671041 CTGAGTATTAGAACCAAGTACTACC 58 192669771 192669789 CAGGAATAGGGTGACAGGG 59 NA InUTR Rattus norvegicus 81 AABR07054723.1 ENSRNOG00000036747 ENSRNOT00000051082 3 1 1 80 3 167787171 167787189 GACCCTTCTCAGAAGAGGC 60 167787230 167787451 TTCCCAAATGTAGCCTATAGCA 59 NA Rattus norvegicus 81 Camk1d ENSRNOG00000017882 ENSRNOT00000024099 1 1 1 80 17 76789650 76876553 TCATGCAACTTGTGTCTGG 58 76876597 76876615 GAGTGCTGGCATCTTTCTC 59 NA Rattus norvegicus 81 Traf3ip3 ENSRNOG00000005565 ENSRNOT00000007649 1 1 1 80 13 111914331 111914349 ACAGGCCAAGTGTCTATCC 59 111911851 111914288 TATCCCTGTTTCCTGCTGTC 60 NA Rattus norvegicus 81 Tas2r102 ENSRNOG00000030993 ENSRNOT00000050359 1 1 1 60 4 166924230 166924249 TCTCCTTGTGGAAACATCTC 57 166924272 166924290 CTAGGGTCTCCATGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pemt ENSRNOG00000054423 ENSRNOT00000083698 3 1 1 81 10 46352934 46399241 TCTGGAATGTGGTAGCAAGG 60 46352872 46352892 GAATAGCAGGCTAGGTAAGGG 60 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000058007,ENSRNOT00000082401 3 4 4 80 8 70129678 70136467 AGAACACTATCAGCTGCCA 59 70136510 70136529 AGGACTCATTGCAGTAGTGG 60 NA Rattus norvegicus 81 RGD1562755 ENSRNOG00000028963 ENSRNOT00000051559 3 1 1 60 14 58878208 58878226 GCATATGTTCGCTTGGCTC 60 58878250 58878268 TGATCCCAATCTTGTTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb17 ENSRNOG00000010436 ENSRNOT00000088644 1 1 1 80 5 160013011 160013031 CACTTGAAGATCCACATTGCT 59 160013073 160013175 CTTGAGGTTCCCTGAGGTG 60 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 2 2 2 84 12 13430075 13438069 ATATCAAAGGGCCCACTGTC 60 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA Rattus norvegicus 81 RGD1560034 ENSRNOG00000038943 ENSRNOT00000059532 3 1 1 80 7 27636632 27693647 AACAGGATGCAGAAGTCCT 59 27693691 27693709 GCTTATCTGAGGTGAGCCT 59 NA Rattus norvegicus 81 Alkbh7 ENSRNOG00000047089 ENSRNOT00000072118 1 1 1 80 9 10046283 10046304 CTATCTCTGGTCCATGTATTGG 58 10046117 10046243 AGATCCACAGAACTTGACAC 58 NA Rattus norvegicus 81 Alkbh7 ENSRNOG00000047089 ENSRNOT00000072118 2 1 1 80 9 10046282 10046303 TATCTCTGGTCCATGTATTGGA 58 10046116 10046243 TAGATCCACAGAACTTGACAC 58 NA Rattus norvegicus 81 Actr2 ENSRNOG00000004959 ENSRNOT00000006607 2 1 1 80 14 104348641 104351215 GTTGAGTCATACACTCTTCCA 58 104348581 104348601 CTGAAATAAAGCTTCTGGTGC 58 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 1 3 3 80 20 3149123 3149142 CTCTGCAATTGTCCTCTGTG 59 3149185 3149692 TGCCTTCCTCTTTCACCTG 60 NA Rattus norvegicus 81 Psmg3 ENSRNOG00000001273 ENSRNOT00000001716 1 1 1 84 12 16899723 16899742 CCAGCAATGTAGCCAATGAC 60 16899788 16901478 AAGACATGGATGAGAGGCTC 59 NA Rattus norvegicus 81 Olr140 ENSRNOG00000049204 ENSRNOT00000050606 2 1 1 60 1 169209210 169209229 CTCACTCTTACCACACTCCC 60 169209250 169209270 TGATTTCCCGAATGTTGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 2 2 2 80 19 45037231 45040929 AAGAAGGGATGGGTACAGG 58 45044982 45045002 TTTCTTGTAGGCAGAAATGGG 59 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 1 2 2 64 8 116101369 116102505 CAAGAGCACTCTCCCTTCC 60 116102533 116102551 CTACGTCGGTAAACACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Bpifb1 ENSRNOG00000015468 ENSRNOT00000055342 2 1 1 80 3 149682972 149682990 ATAAGTCTGGCAGCATCCC 60 149683033 149683650 CAGAGGTGACCTTCATCCAG 60 NA Rattus norvegicus 81 Eid1 ENSRNOG00000008452 ENSRNOT00000042411 3 1 1 60 3 117939019 117939037 GCTGATGGTTGTCAATCGA 58 117939057 117939079 CTCTCGATCAATGATCTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med1 ENSRNOG00000005606 ENSRNOT00000067901 1 1 1 80 10 86116761 86117496 GCTGACAACAAATGGACCC 60 86116699 86116719 TTTCAAGAAGAAACACGCAGG 60 NA Rattus norvegicus 81 Mir3565 ENSRNOG00000035486 ENSRNOT00000053609 2 1 1 67 14 66923129 66923147 TTACTCATACCTCGCAAGC 57 66923177 66923196 TGTAGTGATAACGTAGCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553814 ENSRNOG00000042321 ENSRNOT00000067452 3 1 1 76 3 64554931 64554949 ATATGGCAAGCTTCCTACG 57 64554873 64554892 CTCTTTACTGAACTGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpra1 ENSRNOG00000016665 ENSRNOT00000022534 3 1 1 80 4 120851983 120852004 ATTTCAACATCTATGGCCATGG 59 120852045 120852142 CCACCAGTGAGTAGACCAG 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256,ENSRNOT00000080524 3 2 2 80 9 82721778 82721988 ACTGTCACTCAAGCTGGTC 60 82722032 82722050 TGTCGAAGGGACTTGAAGG 59 NA Rattus norvegicus 81 Gstk1 ENSRNOG00000016484 ENSRNOT00000022275 2 1 1 80 4 71622432 71622636 CATGAAAGACAGTGGAAACCA 59 71622674 71622696 TTCAGGAGAGGAATCTCTTTGAG 60 NA Rattus norvegicus 81 Calhm1 ENSRNOG00000030682 ENSRNOT00000044519 3 1 1 104 1 266918527 266918545 ATCTACGATGGGAACTGGC 59 266916768 266916786 CAGTAATGTGGTCAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Mum1l1 ENSRNOG00000030475 ENSRNOT00000041044 1 1 1 80 X 110406737 110407383 TGTACCAAACAGAGTATCTTCC 58 110407422 110407442 TTTCTTCCACAGATATGTCCC 58 NA InUTR Rattus norvegicus 81 Dnajc11 ENSRNOG00000008802 ENSRNOT00000011960 2 1 1 80 5 169146798 169146818 TTGCACTGATCAGTTATCAGC 59 169146860 169147217 CAAAGAAGCCTGCCTTGAG 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 2 2 2 80 3 173867266 173868468 AACCAGGAAGCTTAACCAG 57 173868511 173868530 TCCACATAGTCACTGAAACG 58 NA Rattus norvegicus 81 Hoxa2 ENSRNOG00000005968 ENSRNOT00000008023 3 1 1 94 4 82133134 82133152 GATGAAGGAGAAGAAGGCG 58 82132415 82133077 TTTCCAGGGATTCTTTGTGG 58 NA Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000021956 2 1 2 80 9 43134083 43134103 GGTTATCCTTCGAAACATGGG 59 43133930 43134044 ACAAAGTGAGGTTCATTCAACC 60 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 2 1 1 64 4 180291607 180315485 GATCATTGTCTGCGTGGTG 59 180315511 180315531 CGTCAACTTGGTATGAGACAC 59 NA DesignNoJunction Rattus norvegicus 81 AC142182.1 ENSRNOG00000028417 ENSRNOT00000038833 2 1 1 238 10 86282020 86282038 TAACTTCCTCACGGAGCAG 59 86281794 86281812 ACTCGGAGCTGTTGTAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mef2b ENSRNOG00000020400 ENSRNOT00000027661 1 1 1 80 16 21003423 21003441 GTGCTGCTCAAATACACCG 60 21003113 21003379 CCTCCTCTTCAGTGTCTGC 60 NA Rattus norvegicus 81 LOC100362384 ENSRNOG00000031540 ENSRNOT00000044575 1 1 1 60 13 89253999 89254018 GTGACTTCTTGGAAAGCCAC 60 89254040 89254059 TTGCCCATCTTCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp2 ENSRNOG00000008892 ENSRNOT00000011840 2 1 1 80 15 27748254 27748820 CCATCACAGGTTATATGTTTGG 57 27748859 27748879 GAGAAGCAAAGCAGTAATTGG 58 NA Rattus norvegicus 81 Nup54 ENSRNOG00000002247 ENSRNOT00000003070 3 1 1 80 14 17133120 17133140 TTTCTATGACCAGAACAGAGC 58 17133182 17134436 TAATGGGATCAACACCAGC 58 NA Rattus norvegicus 81 Canx ENSRNOG00000003343 ENSRNOT00000049942 2 1 1 80 10 35817002 35818259 AAATATGACGGAAAGTGGGAG 58 35816942 35816962 CCGAGACATCAATACAAGTCC 59 NA Rattus norvegicus 81 Olr530 ENSRNOG00000045546 ENSRNOT00000051533 2 1 1 60 3 74523875 74523895 TATTTCTTCCTCACCCATCTG 57 74523916 74523935 TAGGTGTGATGACAGTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 3 3 3 80 10 47108739 47108757 CCTGGCTACATCCATACCA 59 47108799 47110669 TGTGTTCTTGTCTAGAGCTCC 60 NA Rattus norvegicus 81 Tmem260 ENSRNOG00000013353 ENSRNOT00000017871 2 1 1 80 15 25353432 25355559 GCAAGCAAGGATGAAGACTC 59 25355602 25355620 AGTTGTGCTTTCACGTCTG 59 NA Rattus norvegicus 81 Vwa5b2 ENSRNOG00000001707 ENSRNOT00000037612 3 1 1 80 11 83999779 84000250 AACCTAAGCTGGTACAGGC 59 83999717 83999735 CATCAGGCACAAACCAGTC 59 NA Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000050827 1 1 2 88 4 32541759 32541777 CTCTGACACAAGCACACTG 59 32541824 32558604 CTGCATATGTTATCTCGTTTCCTC 60 NA Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000015286 1 1 2 80 4 32495423 32495444 GTGAAGGACGAATTTAGGAGAC 59 32495484 32558603 TGCATATGTCTCCCATTCCT 59 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 3 2 2 80 6 115582512 115582530 TAACCTAGCACAGATGCAC 57 115581638 115582470 CACACGTTCTTAAACAACTCC 58 NA Rattus norvegicus 81 Htr3a ENSRNOG00000006595 ENSRNOT00000008965 2 1 1 80 8 53213592 53213937 AAGTTCTACGTGGTCATCCG 60 53213531 53213552 CACAACCATGAGGAAGATACTG 59 NA Rattus norvegicus 81 RGD1561226 ENSRNOG00000048835 ENSRNOT00000040280 3 1 1 85 14 15724263 15725030 GAATCAAGTCCTAGGGTGC 58 15725079 15725097 AGGAATCCAAGTCGTTCTG 57 NA Rattus norvegicus 81 Plekhh1 ENSRNOG00000010650 ENSRNOT00000014257 1 1 1 80 6 102240640 102240659 AGAATCAACACCTGAAGACC 58 102240701 102240815 TACGAAGATCCTCAAGAGCA 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239,ENSRNOT00000079217 1 2 2 67 18 54118345 54121597 TCTCTGGACATCTGAAGGA 57 54121628 54121646 GCCTGGAGTATACATGTCC 57 NA DesignNoJunction Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 1 1 1 60 7 123283120 123284471 GGAAAGGAGCCAATGAAGC 59 123283078 123283099 ATCACAATGAACTCAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v1g1 ENSRNOG00000008163 ENSRNOT00000011508 1 1 1 65 5 79371690 79371708 GAGAAGGAGTTCAAGGCCA 59 79373117 79373135 CACCTCACTGCTACAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Cxcr1 ENSRNOG00000048239 ENSRNOT00000090868 3 1 1 60 9 81467059 81467080 TCTATCCTTGGTTCTGTCTCTG 59 81467020 81467040 ACGGTATGGTTTATATGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415,ENSRNOT00000092086 3 4 4 80 1 154377589 154377609 GCGGTATCTAAGACAGTATGC 59 154377648 154405941 CTGAATTAAGTAGTCCAGGTGC 59 NA Rattus norvegicus 81 F9 ENSRNOG00000003430 ENSRNOT00000004559 3 1 1 89 X 143102527 143107710 AGTATGTTGATGGAGATCAGTG 58 143107760 143107778 GGCACCAACATTCATAGGA 58 NA Rattus norvegicus 81 Slc9a3 ENSRNOG00000015159 ENSRNOT00000020711 2 1 1 80 1 31738841 31739593 CCATCAAGGAGAAAGATTTGG 57 31738781 31738800 GAAATTCAATGCCTCCACTG 58 NA Rattus norvegicus 81 LOC689821 ENSRNOG00000042277 ENSRNOT00000067365 1 1 1 60 14 105069515 105069533 AATGGACATCAACACTGCT 57 105069473 105069491 TAGGCTGTCATGGATGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Areg ENSRNOG00000002754 ENSRNOT00000003703 3 1 1 80 14 18526427 18526448 AGCAGCCATAATTGTCTTTGTC 60 18524070 18526386 AATCGTTTCCGAAGCAGGA 60 NA Rattus norvegicus 81 Mir101b ENSRNOG00000035532 ENSRNOT00000053655 1 1 1 60 1 247263750 247263769 TTATCATGGTACCGATGCTG 58 247263790 247263810 ACCATTCTTCAGCTATCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000088264,ENSRNOT00000066546 1 2 2 80 15 18882595 18882614 AGATGAAGCTGGAGAATGTG 58 18834535 18882554 CTTTACTGTCAATGGACACGA 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000009813,ENSRNOT00000091155 1 2 4 80 2 182032236 182034916 CGATAAAGTGGACCTCTCGA 59 182032175 182032193 GCAGGTCTTAGGCTAGGAG 59 NA Rattus norvegicus 81 Rn60_X_0559.1 ENSRNOG00000051159 ENSRNOT00000076038 3 1 1 60 X 55635805 55635825 TTAAGCCCTTCATTTGCTCTC 59 55635847 55635865 ATGAAGTCATCGGTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 2 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930859 50930878 TTTCAGAAGCTTCTCTGTGG 58 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 3 2 2 80 4 121649212 121649231 CAATGAAATGTGGGCTTACG 58 121649272 121649808 TGGTTGTAAATACCTCACCAC 58 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 1 2 2 80 9 79988099 79989911 ACTACCTCTACAAGGACCC 57 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 2 2 3 80 3 113311142 113311163 AAGATGTGATCCTAAATGAGCC 58 113310683 113311101 GAGGAAAGCCTTTGGAGTG 59 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 2 2 2 80 4 99515430 99515723 TATTCCTGGCAAAGCCCTC 60 99515368 99515388 GGACAATTGGCCTTTATACCC 59 NA Rattus norvegicus 81 Cabin1 ENSRNOG00000001237 ENSRNOT00000001659 2 1 1 80 20 13869527 13869546 AACACAGCACATGAGTACCT 59 13869589 13876428 AACGTGCACATAGAATCGC 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 1 1 1 68 6 98601673 98605982 TGACGCAGTTCCTGATGAG 60 98601623 98601643 ACTGGTCCTTAATCTTCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ism2 ENSRNOG00000050312 ENSRNOT00000074480 2 1 1 80 6 111310569 111312219 GATATGCTTGATTCAGATGTGG 57 111310510 111310531 TTGGCTCAGATACTTAGTTAGG 57 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000077632 2 1 5 75 20 3419358 3419376 CACTACTTTCCCTGTCAGC 58 3417153 3417171 CCAGTCAATCACCTGAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Cotl1 ENSRNOG00000016257 ENSRNOT00000021954 2 1 1 79 19 52499244 52499262 ACGAAGATCGACAAGGAGG 59 52499084 52499201 AAAGTCACCCAGATGACCG 60 NA DesignRelaxed Rattus norvegicus 81 Alx1 ENSRNOG00000004390 ENSRNOT00000006007 3 1 1 81 7 44767509 44767531 CATTACCCGGATGTATATGTCAG 59 44764695 44767469 TTTGAAACCAAACCTGGACC 59 NA Rattus norvegicus 81 Ngb ENSRNOG00000011719 ENSRNOT00000016057,ENSRNOT00000081727 2 2 3 90 6 111128697 111128715 GGACCTGTCTTCACTGGAG 59 111127273 111128642 TCACCTACTGTCGAGAAGGA 60 NA Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927 2 1 2 99 4 150485701 150487920 TCACCCAGAAAGGAAATGGA 59 150485621 150485639 TGTGTTCTTGTTGGTGAGC 59 NA InUTR Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 2 2 2 85 14 18660373 18680877 TAGTGGCTGCAGGTATTCC 59 18660306 18660324 TACGTAGTTGATGCCCACG 60 NA Rattus norvegicus 81 Olr103 ENSRNOG00000045842 ENSRNOT00000048299 2 1 1 60 1 168575864 168575882 AGTTTCCTAACGCATCGCT 60 168575904 168575924 TTGCCAAGATGATATGGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il24 ENSRNOG00000004470 ENSRNOT00000006106 2 1 1 80 13 47620284 47620305 CAAGGTCTTGAAGTCATTCTCC 59 47619806 47620244 GCATTGTCCTTACTAGGCTG 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 2 2 2 81 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777106 87777127 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400,ENSRNOT00000086368 3 2 2 80 15 19821958 19824808 TGAATCCAAAGTATGACGCC 58 19821897 19821916 ACTCGATCTCTTCTAGGAGG 58 NA Rattus norvegicus 81 Dnase1l2 ENSRNOG00000042352 ENSRNOT00000012203 3 1 1 80 10 13814015 13814173 CGTCATAGCACAGATTCTGG 59 13813954 13813972 AAGGACACTGCACTTAGGT 59 NA Rattus norvegicus 81 RGD1310110 ENSRNOG00000031849 ENSRNOT00000041420 3 1 1 80 15 26669066 26669084 AAGAACGAGTCCATCCCTC 59 26655178 26669025 TCTTCTACCTCTTCAGATTCGA 58 NA Rattus norvegicus 81 Cisd2 ENSRNOG00000048258 ENSRNOT00000074632 3 1 1 85 2 240597721 240611432 CCTCACAGTTGCAGAATGG 59 240597654 240597672 GGAAGAATGGACGAACTGC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 1 2 2 80 6 111381613 111381631 ATCTGTAGTGTGCCTGGAG 59 111379847 111381570 CCCTGTGTACTTGAATGACC 58 NA Rattus norvegicus 81 Gucy1b3 ENSRNOG00000012060 ENSRNOT00000064930 2 1 1 80 2 180979278 180979296 CCATGAAGGGCAAGAAGGA 60 180978189 180979236 CATCCTGGTTTGTTTCCTCTG 59 NA Rattus norvegicus 81 Flrt2 ENSRNOG00000003732 ENSRNOT00000004955 2 1 1 80 6 119520021 119520039 CTTCTTCCCTTTCCACCTC 58 119520082 119606784 AAGCAGAGTCAGTAATCTGG 57 NA InUTR Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344,ENSRNOT00000025354 3 2 2 80 18 56077484 56078213 CTGCTTACGAAGTCTGGAC 58 56078255 56078275 AGAGTTCTTAAGGTGCTTCAG 58 NA Rattus norvegicus 81 Csn3 ENSRNOG00000001951 ENSRNOT00000002671 1 1 1 81 14 21808313 21808334 CGTAGTTATGAATATCCTGGCA 58 21806421 21807648 CTTCTCACGGCAGTTTGAG 59 NA Rattus norvegicus 81 Mir6316 ENSRNOG00000049017 ENSRNOT00000075015 2 1 1 60 1 278298680 278298698 CACATGTCTGTCTCTGTGG 58 278298720 278298740 CAGACATGTGAAAGTCAGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 3 1 1 61 7 123579062 123580719 AAATGTCCTTCGGTCTTCTC 58 123580742 123580761 TGTCCCAACATAGAGAAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Hoxd9 ENSRNOG00000001580 ENSRNOT00000065426 2 1 1 80 3 61621028 61621393 ACTTGACCCAAACAACCCT 59 61621435 61621455 TGGTATTTGGTGTAGGGACAG 60 NA Rattus norvegicus 81 Fbxl20 ENSRNOG00000005081 ENSRNOT00000067317 2 1 1 80 10 86052864 86052883 ATTCAAGCACTAGTGAGAGG 57 86051401 86052823 GAGAGCTTCATCTTCTAGCTG 58 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 1 2 2 80 7 142109764 142109784 AAGTGTCTCTTCATAGGCCTC 59 142109823 142111978 CCTAGGAAACAGGTACATTAGC 58 NA Rattus norvegicus 81 Syn2 ENSRNOG00000008157 ENSRNOT00000011292 1 1 1 80 4 147147675 147151010 AGGTTGTCAGGTCCTTCAG 59 147151054 147151072 GGCGGAAGTCTTCATTCTC 58 NA Rattus norvegicus 81 Rhox7 ENSRNOG00000031534 ENSRNOT00000049435 1 1 1 80 X 123979764 123979783 AATCACTATCCTAGTGCTGC 57 123976977 123978228 AAACCAATTCTCCACTCTGG 58 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000029046 ENSRNOT00000042095 2 1 1 60 12 10966577 10966600 CGGATGAAAGTTAAGAAACTACCC 60 10966413 10966433 ACTTAAACCTCTTCAGGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076976,ENSRNOT00000084238 2 2 3 89 2 154585807 154585827 ATGAACCTGACTGGGAATCTC 60 154585874 154588144 GGCCAAAGATATAGACAACTCTG 59 NA Rattus norvegicus 81 Pnpt1 ENSRNOG00000003600 ENSRNOT00000004919 1 1 1 80 14 113546455 113546475 CTTTGTGTCCTGTTATTCCCA 58 113546517 113547854 AAGATGACCCGTTTGACTC 58 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 3 2 2 80 1 143679967 143681989 CTGTTCTACGTGTATGCGG 58 143682033 143682051 ATCGATGATGCCATCTTGC 59 NA Rattus norvegicus 81 LOC100362298 ENSRNOG00000030107 ENSRNOT00000048495 1 1 1 60 5 117509572 117509591 CCCACGACAATACAAGATCC 59 117509612 117509632 CCTATCCTTTACGTCCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhodh ENSRNOG00000015063 ENSRNOT00000066733 1 1 1 80 19 42068609 42068627 CTAGCTGTTCGAGTCACCT 59 42068671 42070758 CAGGACTTTCACTTCCAGC 59 NA Rattus norvegicus 81 RGD1560242 ENSRNOG00000036615 ENSRNOT00000054776 3 1 1 80 1 241424257 241424277 GATATGGAGGATCCCAAGGTG 60 241397980 241424216 TACCCATCTTGGACTGTCAG 59 NA Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 1 2 2 80 7 11306846 11307048 GACCTTATCTTACAGATCAACGG 59 11307087 11307106 CTCTGACTTCTCAATGAGCC 58 NA Rattus norvegicus 81 Cox18 ENSRNOG00000003052 ENSRNOT00000004074 3 1 1 80 14 19435124 19436365 CATTACATCCTTGCTAAGGTGG 59 19436403 19436424 GACTGCAACTTCTTGGTTAAGG 60 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701 3 1 2 138 17 76002805 76002823 TGTGAGCCAGACATCTGTG 60 76008866 76008886 CTCAGTGTGATAACGGCCT 60 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509,ENSRNOT00000078050 2 3 3 95 6 122763600 122764879 CATTTCACCTTGCAAAGCC 58 122764937 122764956 GCTTTAGTACACTTTGCGTC 58 NA Rattus norvegicus 81 RGD1560212 ENSRNOG00000057774 ENSRNOT00000082419 3 1 1 128 18 76728631 76730304 GTCTTAAAGCAAACGGTGC 58 76730396 76730414 CATGTTCATCAGGTCGTCC 58 NA InUTR Rattus norvegicus 81 Cd8a ENSRNOG00000007178 ENSRNOT00000009515 3 1 1 97 4 99239162 99239269 ACTGCTGGATGTTATCACTAGG 60 99239326 99239345 ATGTTAGCTTCACCTCCTGG 60 NA Rattus norvegicus 81 Trhr2 ENSRNOG00000012789 ENSRNOT00000017317 1 1 1 87 19 55182147 55183523 AGTCTTCACCAGGTTGGTG 60 55182078 55182096 GAGAACCACGGAGTAGCAG 60 NA InUTR Rattus norvegicus 81 Vom1r99 ENSRNOG00000053093 ENSRNOT00000085001 3 1 1 60 4 121969356 121969376 ACACTGATTCTCACATAAGGG 58 121969316 121969335 TTGACTGAGATTCCAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 ste2 ENSRNOG00000001957 ENSRNOT00000002680 3 1 1 80 14 22085534 22087309 GAGGATATGAAAGAGGATATCCG 58 22087347 22087367 TACTAGCTCTGCTAATGGGTC 59 NA Rattus norvegicus 81 Olr691 ENSRNOG00000048259 ENSRNOT00000047425 1 1 1 60 3 78087143 78087161 AGACCTCTGCTATACCTCC 57 78087180 78087203 CCTTTCTATGATGAGATCACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr93 ENSRNOG00000026514 ENSRNOT00000034042 1 1 1 80 1 141513634 141513652 AGCAGCTTCTCCTCTTACC 59 141513695 141514579 AAAGAGGAATCCTTGAGCCA 59 NA Rattus norvegicus 81 Olr563 ENSRNOG00000037833 ENSRNOT00000057478 3 1 1 60 3 75478524 75478544 CTTCTTCTGTGACATACCTCC 58 75478560 75478584 CTCATTAATAGAAGTGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfr2 ENSRNOG00000020416 ENSRNOT00000061132 3 1 1 80 7 11342115 11342135 GAATGCAGCTTCAATGATAGG 58 11341449 11342075 AACTTTCTTCCTGTACTGCAG 58 NA Rattus norvegicus 81 Med22 ENSRNOG00000049749 ENSRNOT00000066193 3 1 1 81 3 5454397 5456453 TACTCGTCCAGCTCAAGTC 59 5454334 5454352 AATCTGTGTCGAGGTCCAG 59 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000082668,ENSRNOT00000008256 1 2 2 80 10 86195233 86199517 CTGATCAGTCGTCTCTGTG 57 86199559 86199579 TTTCATGGTGTTGAAGTAGGG 58 NA Rattus norvegicus 81 Fabp1 ENSRNOG00000006675 ENSRNOT00000008840 3 1 1 80 4 99064844 99064864 GTGATCCACAATGAGTTCACC 59 99064906 99066148 CTTAACCACTGCCTTGACC 59 NA Rattus norvegicus 81 Inpp5d ENSRNOG00000017020 ENSRNOT00000051338 1 1 1 80 9 94823678 94823697 GATGAAGAACAAGCACTCGG 59 94823740 94825405 GGTGCATTACCCATGTTCC 59 NA Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 1 2 2 80 2 198704291 198704311 CACCATTATCCTTCCCAAGAG 58 198704125 198704254 TTCTCTAGAGTCTCTAGTTTCTGG 59 NA Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576,ENSRNOT00000013546 3 3 3 82 3 11239330 11239348 GGGATCACCACATCCAGAG 60 11239394 11239589 TGCAGACTCCATCTTCAGC 60 NA Rattus norvegicus 81 Gnat1 ENSRNOG00000017589 ENSRNOT00000023791 1 1 1 80 8 116434979 116435113 TTCCCGATTACGATGGACC 59 116434917 116434935 GTCGCATGTTAAGCTCCAG 59 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000001075 2 1 3 106 20 40683499 40683517 ACAGGACACCATGGATGTG 60 40683586 40701726 TCATCACAGAGTCTTGCTGG 60 NA InUTR Rattus norvegicus 81 Rn60_X_0683.2 ENSRNOG00000051200 ENSRNOT00000076082 3 1 1 60 X 67386535 67386557 CCAATGTCTGATCTAATGTCGTG 60 67386576 67386595 TTGAGAAGGCTGAAGTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1e ENSRNOG00000024730 ENSRNOT00000003859 1 1 1 80 10 74566792 74566810 AAGTCCTCCAGAGTGACCT 60 74562152 74566750 CTGTCTCAATTTCCACAGTCC 59 NA Rattus norvegicus 81 Cd8b ENSRNOG00000007129 ENSRNOT00000009392 2 1 1 80 4 99186027 99188953 GTGTGAAGCTATCAGCTCTC 58 99188995 99189014 CTGTTTGGTTGGTTTGAACC 58 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 2 2 2 80 15 28696609 28696630 CGGAGGAAATGACAATTACCTG 60 28696669 28701734 CTTGGTGTATGGAATGTCTCG 59 NA Rattus norvegicus 81 Mptx ENSRNOG00000046165 ENSRNOT00000073147 3 1 1 81 13 91773594 91776351 GAGGTATATCACAATCAGACATGG 59 91773536 91773555 GGTATCAGGGACACATAGGC 60 NA Rattus norvegicus 81 Cend1 ENSRNOG00000018448 ENSRNOT00000024867 2 1 1 129 1 213971728 213973060 GAAGACGTAAGACCCATATAATGC 60 213971622 213971640 CTGACTTTCCTCGGGACTC 60 NA InUTR Rattus norvegicus 81 Gatb ENSRNOG00000037655 ENSRNOT00000075823 1 1 1 80 2 184600904 184602438 AGGAAAGGTGAACACAAATGG 59 184602476 184602498 AGAGAAGAGTTTAGAGTTGGAGG 59 NA Rattus norvegicus 81 Or7e24 ENSRNOG00000046041 ENSRNOT00000072834 3 1 1 60 8 20398020 20398039 TTACCTGCTTCAAGGATGTG 58 20397979 20398000 TTAAGAAGTTGTGAAGGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2ry14 ENSRNOG00000013872 ENSRNOT00000066948 1 1 1 84 2 149332512 149332530 AAGAATTCACCCTGCTGCT 60 149332445 149332463 GACTTCTCTAAACGGCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Fabp7 ENSRNOG00000000814 ENSRNOT00000001079 2 1 1 80 20 40770315 40770335 AGAACACAGAGATCAGTTTCC 58 40770374 40771051 GAATCACAGACTTACAGTTCCT 58 NA Rattus norvegicus 81 Pnpla2 ENSRNOG00000047551 ENSRNOT00000025826 1 1 1 80 1 214000994 214001113 TTAGGAGGAATGGCCTACTG 59 214001156 214001174 CCTCTGCATCCTCTTCCTG 60 NA Rattus norvegicus 81 Chmp5 ENSRNOG00000008672 ENSRNOT00000011907 2 1 1 80 5 57271251 57271271 AACAGTCCTTTAACATGGAGC 59 57271312 57271918 ATTTCATTGCATCAACCGTG 58 NA Rattus norvegicus 81 Rqcd1 ENSRNOG00000016034 ENSRNOT00000021548 3 1 1 97 9 81794970 81794988 AACCCTCCAACCTTGACAG 60 81795049 81799431 AAAGCTGACCTGGTCTCTG 59 NA Rattus norvegicus 81 Ccdc37 ENSRNOG00000017959 ENSRNOT00000024222 1 1 1 80 4 122323233 122323254 ATTGAAGAGCATCTTAGTAGGG 58 122322671 122322765 AAGCTGTGAACCTCTTTCC 58 NA Rattus norvegicus 81 Etv3 ENSRNOG00000043095 ENSRNOT00000021577 3 1 1 86 2 186876389 186882596 CTCAAGTGGTGTGGTTCCT 60 186882645 186882664 GGAGAATGGGTGTCTAGAGG 59 NA Rattus norvegicus 81 Gpr87 ENSRNOG00000013894 ENSRNOT00000018573 2 1 1 88 2 149404556 149404577 TACATCACAACTAGAGAATGGG 57 149400036 149400054 GTTTGCAGTGTGACTTGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_13_0855.2 ENSRNOG00000051083 ENSRNOT00000076593 1 1 1 60 13 80539438 80539585 CTGCAAAGAAGAATGTGCTG 58 80539607 80539626 TCACTCCTGTGATTTCTTGC 58 NA DesignRelaxed Rattus norvegicus 81 Ap3m1 ENSRNOG00000011461 ENSRNOT00000016387 3 1 1 82 15 3443151 3443169 ATACAGACTGAAGTGCCAC 57 3443214 3443909 CACTCACCAAAGTAGTCCTG 58 NA Rattus norvegicus 81 Cd55 ENSRNOG00000003927 ENSRNOT00000005284 2 1 1 80 13 47137865 47139058 GTTAAAGTTCCAGCAACACAG 58 47137805 47137826 TCCTCTGTCTTTAGATGTTCTC 57 NA Rattus norvegicus 81 Fen1 ENSRNOG00000020531 ENSRNOT00000027842 3 1 1 98 1 226253444 226255660 GTAGGAAGAAGCCATTGCTC 59 226253365 226253384 GATGTCATTCTCACGGATGG 59 NA InUTR Rattus norvegicus 81 Flt3 ENSRNOG00000054764 ENSRNOT00000088957 1 1 1 80 12 9424002 9429316 CTGGAGTTCAAGTCGTGTG 59 9429359 9429378 ACAGATCTTCACCACCTTCC 60 NA Rattus norvegicus 81 Olr235 ENSRNOG00000050756 ENSRNOT00000048370 3 1 1 60 1 172051607 172051628 CTACTCCACTCTCATGTCTTCC 60 172051648 172051667 ACCCGCATAGGAAATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf1 ENSRNOG00000061088 ENSRNOT00000087298 1 1 1 80 7 141889610 141905468 TCAGATAGTCCATCAGGTGTC 59 141905510 141905528 TTCTGTGAGGAGCCTATGC 59 NA Rattus norvegicus 81 Kpnb1 ENSRNOG00000009275 ENSRNOT00000012376 1 1 1 80 10 85105812 85105830 CAGCCACCTATTGCTTGTC 59 85105165 85105768 GGTGTCCATCAGGTCTGTC 60 NA Rattus norvegicus 81 Snx9 ENSRNOG00000046874 ENSRNOT00000075268 1 1 1 80 1 46798772 46798893 CACCCACTAACACTAATCGA 57 46798935 46798954 CAAACTTAACCAGGAGACGT 58 NA Rattus norvegicus 81 Snx9 ENSRNOG00000046874 ENSRNOT00000075268 3 1 1 81 1 46791991 46792805 CTCCCTAGGGTTCCAAGAC 59 46793767 46793785 CACACTTGCATACACAGCT 59 NA Rattus norvegicus 81 Wt1 ENSRNOG00000013074 ENSRNOT00000067940 1 1 1 80 3 95174269 95174288 TACCCAGGCTGCAATAAGAG 60 95174329 95176379 GTATGGTTTCTCACCAGTGTG 59 NA Rattus norvegicus 81 Sdhd ENSRNOG00000022980 ENSRNOT00000059169 2 1 1 61 8 55037571 55037589 GTTCTCTTAAAGCTGGGCG 59 55035315 55037546 CTTCGGAGTGACAGAGCTC 60 NA DesignRelaxed Rattus norvegicus 81 LOC361346 ENSRNOG00000028677 ENSRNOT00000014670 2 1 1 80 18 68974561 68978062 CCCTGTTACTTTCAAATCTCCTG 60 68974503 68974522 TCCTCAAGACACTTTGTCCT 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000090538,ENSRNOT00000014470 2 2 4 80 2 149249581 149249601 GACTTGTGCCTATTACTCTGC 59 149249643 149273128 TGTGTCCACTCCAAATTGG 58 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000066043,ENSRNOT00000083132 1 2 2 80 5 35947478 35961096 ACAGAGGAGACAAAGAGGA 57 35961140 35961158 AGTTTCCTCATCAGCAGTC 57 NA Rattus norvegicus 81 Zmynd10 ENSRNOG00000021602 ENSRNOT00000039258 1 1 1 80 8 116302693 116302948 GATGGGATCTGAAGGGTGG 60 116302992 116303010 CTGACAGTTGCATCGAGGA 60 NA Rattus norvegicus 81 Pga5 ENSRNOG00000047279 ENSRNOT00000072343 3 1 1 80 1 226725812 226725832 CTCCTATTACCATGGAGAGCT 59 226723863 226725770 ATGGAGATGCTGTCCACAG 60 NA Rattus norvegicus 81 Kif28p ENSRNOG00000050602 ENSRNOT00000075426 3 1 1 80 13 97976838 97980149 AAGGGACTCATGAGGTATGG 59 97976777 97976795 AACGCTGGTAAAGTTCCTC 58 NA Rattus norvegicus 81 Gzmbl1 ENSRNOG00000050198 ENSRNOT00000071692 1 1 1 80 X 123016501 123016649 CTATTAAAGCTGAAGAGTAAGGCC 59 123016444 123016465 CTTCACTTTGAAGTTGCTTCTG 59 NA Rattus norvegicus 81 Ccl2 ENSRNOG00000007159 ENSRNOT00000009448 1 1 1 80 10 69413002 69413363 GAAGCTGTAGTATTTGTCACCA 59 69413402 69413422 TCTAATGTACTTCTGGACCCA 58 NA Rattus norvegicus 81 Orai3 ENSRNOG00000039730 ENSRNOT00000025732 3 1 1 93 1 199217832 199217850 CTAAGCTCAAAGCCTCCAG 58 199220942 199220961 TATTCATGATCGCTCTCCAG 57 NA DesignNoJunction Rattus norvegicus 81 Armcx1 ENSRNOG00000046862 ENSRNOT00000052422 2 1 1 80 X 105913642 105913925 TCTGCATACAAGCGTATCAC 58 105913968 105913986 CCAGATCAGGAGCAAAGTC 58 NA InUTR Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 2 2 2 80 6 126216223 126216242 TCCCTTCTCTGAAGAACACC 59 126216281 126239812 AGCCTTCCAGGTACAATATAGAC 60 NA Rattus norvegicus 81 Dcbld1 ENSRNOG00000000407 ENSRNOT00000000462 3 1 1 80 20 33450425 33450444 CCATCAGCTATGACAACGAG 59 33450487 33453257 GAGGCTGCTGATAATCTGC 59 NA Rattus norvegicus 81 Cd300le ENSRNOG00000042825 ENSRNOT00000034741 2 1 1 60 10 103590544 103590563 TCTCTGCTCTGATCTTCCTC 58 103586743 103586761 CCAGTGACTGGATCCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Gins2 ENSRNOG00000017575 ENSRNOT00000023709 1 1 1 80 19 54158924 54158943 GAAGGAGGAGACTTTCACCC 60 54154910 54158883 TTGTCAGAAGCATGATTCAGC 59 NA Rattus norvegicus 81 Nfe2l2 ENSRNOG00000001548 ENSRNOT00000002114 1 1 1 80 3 62499628 62499649 TGATTTAAGCAGCATACAGCAG 60 62499228 62499591 GTATTAAGACACTGTAACTCGGG 59 NA Rattus norvegicus 81 Chga ENSRNOG00000052549 ENSRNOT00000090857 3 1 1 93 6 126443326 126443345 CCAGAGAAGACAGTGTGGAG 60 126443401 126445165 TCTAGCTCCTGGTCCTCTG 60 NA Rattus norvegicus 81 Olr811 ENSRNOG00000005403 ENSRNOT00000007157 1 1 1 60 4 72428344 72428363 TACATCTCTGTGACTGTGCC 60 72428383 72428404 AGATGCTGTTACTCATAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 2 2 2 82 1 220075869 220075887 GATCTGGGCAATGTTCACG 59 220075735 220075824 ATCACATCCCACACCTTCAG 60 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000081678 3 1 2 80 2 184238603 184242615 CTCCTAAGGTGCTGAAAGG 58 184238541 184238560 CAGAACCACTAACTATGCGG 59 NA Rattus norvegicus 81 Ubald1 ENSRNOG00000027368 ENSRNOT00000033695 2 1 1 82 10 11341494 11341997 CACCAGATGATGTGCACTC 59 11342043 11342061 TTGAGACGGGAGAACATGG 59 NA Rattus norvegicus 81 Mical1 ENSRNOG00000000307 ENSRNOT00000000337 2 1 1 80 20 46203344 46203362 CAGAAATCAGTGGCGTAGC 59 46203404 46203988 TCTCCAGATCAATACCTGTGG 59 NA Rattus norvegicus 81 Zfp13 ENSRNOG00000003455 ENSRNOT00000004589 2 1 1 167 10 12909931 12912736 GGCTTTGGAAGTTTATCTTCAG 58 12909785 12909803 GTTGACCATACTTCGGGTC 58 NA Rattus norvegicus 81 Olr1488 ENSRNOG00000046651 ENSRNOT00000071144 1 1 1 60 10 60363971 60363990 CCCTCTTCGTTATACCAGCA 59 60364013 60364031 GGAGAGCACCACTAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1488 ENSRNOG00000046651 ENSRNOT00000071144 3 1 1 60 10 60363689 60363707 ATACCTCACCACCATCCTG 59 60363729 60363749 ATGGGAATCCAGACAAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtfr1 ENSRNOG00000021359 ENSRNOT00000045586 1 1 1 80 2 104038304 104038323 CCAAGGAGAAGCTGAAAGAG 58 104038365 104039106 AATGTATGTGGGCCAAACAG 59 NA Rattus norvegicus 81 Engase ENSRNOG00000027498 ENSRNOT00000038088 2 1 1 80 10 107508478 107510568 ATACTGACAAGTCACTGGAGC 60 107510610 107510628 GACACTCATACACCCACCC 60 NA Rattus norvegicus 81 LOC680058 ENSRNOG00000026891 ENSRNOT00000034790 2 1 1 62 1 79727688 79727706 AAAGAAAGAAGGCTGTCGT 57 79727748 79727769 CTTCTTCAATGACTATGCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Lmx1b ENSRNOG00000017019 ENSRNOT00000022953 2 1 1 80 3 12614380 12614398 GGGTGACTACGAGAAGGAG 59 12612373 12614339 TCTTCATCCTCACTCTTCACAG 60 NA Rattus norvegicus 81 Tpsab1 ENSRNOG00000024181 ENSRNOT00000024767 3 1 1 85 10 14701828 14702745 AACAATGATGTAAGCCTGCC 59 14701762 14701781 TACTTCAAGTCACAGAGGCG 60 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324,ENSRNOT00000042677 3 3 3 80 12 20956064 20956082 CCTGGTCAACAATTGTCGA 58 20955531 20956022 GCATACAGAGACAGGAATCTG 58 NA Rattus norvegicus 81 AABR07017662.1 ENSRNOG00000039404 ENSRNOT00000060386 2 1 1 87 15 29810628 29810776 CTTAGTGTTTGGAGGAAGCA 58 29810560 29810578 GTTCACAGTCAGAGAAGCC 58 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000047951 ENSRNOT00000074167 2 1 1 85 4 82171440 82172416 TAGTCACGACAACATAGGTGG 60 82171375 82171394 ATTCTTTCTCCAGCTCCAGG 60 NA Rattus norvegicus 81 Mss51 ENSRNOG00000007632 ENSRNOT00000010178 3 1 1 80 15 4248293 4248564 GCTATGAAGAGTACAAGTTGGT 58 4248602 4248623 GGAACATTTCTTGTTGACATCG 59 NA Rattus norvegicus 81 Ift140 ENSRNOG00000016545 ENSRNOT00000022063 1 1 1 80 10 14453213 14453350 GTATCACAAGGCTGGACAC 58 14453394 14453412 GCTATGAGTTGTAGGGCTG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000078589 1 3 5 80 1 15819453 15819474 TAGTGGATCAAGAAAGCAAGAG 58 15819512 15820669 CCTTTATGTTTGCTGTCATCTC 58 NA Rattus norvegicus 81 Rltpr ENSRNOG00000024452 ENSRNOT00000041970 2 1 1 80 19 37658345 37658364 GGCAGACTCTACTTCTGACC 60 37658407 37659624 AGCTCATTCACCTGCTCTG 60 NA Rattus norvegicus 81 LOC680273 ENSRNOG00000039296 ENSRNOT00000060192 2 1 1 81 12 17904202 17904220 TCAATGATGACGCTGACGA 60 17903409 17904157 GCGATGTAGCTGTATGCTG 59 NA Rattus norvegicus 81 Tmprss11bnl ENSRNOG00000002002 ENSRNOT00000002743 3 1 1 82 14 24108173 24108194 CATCTTACATCAGATGCTGGAG 59 24107462 24108132 CTTTAGTGATTTCCGTGAGCT 59 NA Rattus norvegicus 81 Enthd2 ENSRNOG00000028161 ENSRNOT00000038993 2 1 1 80 10 109277682 109278410 GAGCTTTCTACATAGGCTCC 58 109277621 109277639 TCTTCAAACAGGTAGCCTG 57 NA Rattus norvegicus 81 Rab11fip3 ENSRNOG00000032152 ENSRNOT00000027439 2 1 1 81 10 15353046 15353064 TGAGGAGAACAGTGAGCTG 59 15352335 15353002 CATCTTCTGCTTCTCCTCCT 59 NA Rattus norvegicus 81 Fbxl8 ENSRNOG00000015242 ENSRNOT00000020440 1 1 1 80 19 37223572 37224399 AAGCATCAGTTGTGACTGTG 59 37224441 37224460 CTCAGGTTGTGAATGTGGTC 59 NA Rattus norvegicus 81 Fbxl8 ENSRNOG00000015242 ENSRNOT00000020440 3 1 1 80 19 37223568 37224397 ATACAAGCATCAGTTGTGACTG 59 37224437 37224456 GGTTGTGAATGTGGTCTAGG 58 NA Rattus norvegicus 81 Rd3 ENSRNOG00000050766 ENSRNOT00000075086 1 1 1 102 13 110745861 110747524 CATCCTCAGGTTCCGACAG 60 110747590 110747608 CTTCATCTTCTCCAGGGCC 60 NA Rattus norvegicus 81 Pdp2 ENSRNOG00000012343 ENSRNOT00000016462 1 1 1 88 19 599454 601399 GGACGAGGATACTAGGCTG 59 599384 599402 TTGAAGATCCGGTAGGACG 59 NA InUTR Rattus norvegicus 81 Olr1632 ENSRNOG00000046582 ENSRNOT00000050189 2 1 1 60 15 27499503 27499521 CTCATTGGATTCCTTGGCT 58 27499461 27499479 CACAGAAGGGAAGTTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb5 ENSRNOG00000039457 ENSRNOT00000060468 1 1 1 60 18 30880706 30880724 GATCCAAGTCACTGATGCC 58 30880746 30880766 GACTCTGTATACTTCCTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496,ENSRNOT00000067070 2 2 2 80 1 15563009 15566887 GAGACAGCAGATACTCTCAG 57 15566927 15566948 GATACTGGACAATGTTCTTGTG 58 NA Rattus norvegicus 81 Olr1619 ENSRNOG00000048856 ENSRNOT00000046317 1 1 1 60 15 27346830 27346853 CTCTTCTTCATTGTCTACCTACTC 58 27346872 27346890 ACACAGCACAGATGATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp236 ENSRNOG00000016303 ENSRNOT00000022086 2 1 1 80 18 79500293 79500311 GCCAGTACTGCATGAAGAG 58 79499042 79500250 CAAAGGGTCTAACTCCTGTG 58 NA Rattus norvegicus 81 Ccnyl1 ENSRNOG00000023807 ENSRNOT00000049411 1 1 1 80 9 71427267 71427285 GGATGATCAGGCTGTATGG 58 71427326 71430509 CTTTCCATCTCATTCATGTCCT 58 NA Rattus norvegicus 81 Ccnyl1 ENSRNOG00000023807 ENSRNOT00000049411 3 1 1 80 9 71398930 71398948 CTGAGTTGGATTTCGGAGC 59 71398992 71409227 CCAAAGCTAGATCTTCGGG 58 NA Rattus norvegicus 81 Slc17a6 ENSRNOG00000016147 ENSRNOT00000022383 1 1 1 80 1 107035220 107035604 TGCTATCTCTGGTTTCAATGTG 59 107035645 107035663 ACACCATTTGAAATGCCCA 58 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000082513,ENSRNOT00000002309 1 2 2 80 5 79239648 79248853 ACCTGATGGAGAATACATTAGACC 60 79239591 79239609 CAGACACATCTGGGAGAGC 60 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 3 2 2 80 1 199292872 199292960 TGAAGATCACCAATGCTGG 58 199293004 199293022 ACACAAACACCTCACTCTG 58 NA Rattus norvegicus 81 Wbp2nl ENSRNOG00000008038 ENSRNOT00000010606 3 1 1 90 7 123540803 123540821 GTTGCAAGCTTCTGGATGG 60 123540875 123546454 CATAGGCAGCTTGGTATGC 59 NA Rattus norvegicus 81 Pard6g ENSRNOG00000055157 ENSRNOT00000084621 1 1 1 80 18 76559934 76590090 GAAGTCAAGAGCAAGTTTGGG 60 76590127 76590150 GTAGAAATCTTCAAACTTCCCAGG 60 NA Rattus norvegicus 81 Tas2r140 ENSRNOG00000021329 ENSRNOT00000038581 2 1 1 60 4 167201975 167201994 GAAGACGGTTCTCCTTAGTG 58 167201934 167201952 AAAGCAAGTCTGGAGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgka ENSRNOG00000022943 ENSRNOT00000036373 2 1 1 80 7 3144223 3144459 ACCCTGTACAATCAAGATCAC 58 3144163 3144183 CCAAAGAAATTGGAGGAACTG 58 NA Rattus norvegicus 81 Iqub ENSRNOG00000021729 ENSRNOT00000064983 1 1 1 80 4 51576457 51576475 TGATAAACTGCTCACGCCA 60 51526928 51576413 TGAATCACTATCACCGCGT 59 NA Rattus norvegicus 81 Igfbp6 ENSRNOG00000010977 ENSRNOT00000014807 2 1 1 83 7 143749626 143749645 GAACGAAGAGACACCTTTGC 60 143749691 143752114 TTGGTAGTCTCTTCCGACG 59 NA Rattus norvegicus 81 Smad7 ENSRNOG00000018359 ENSRNOT00000024831 3 1 1 97 18 71397849 71399214 CGACTCTGTGAACTAGAGTCTC 60 71404512 71404530 GAGGAAGGTACAGCGTCTG 60 NA Rattus norvegicus 81 Gc ENSRNOG00000003119 ENSRNOT00000004174 2 1 1 80 14 20277798 20278818 GACTTCAGATCTCTATCACTAATCC 58 20278856 20278874 CTTCACAAGCTGACTGACC 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317,ENSRNOT00000083855 2 2 3 90 8 111773207 111773225 GAAGAAAGTCCTTCCTGCA 57 111770200 111773155 TTTATTGGCTGAGATATCCCG 58 NA Rattus norvegicus 81 Asb15 ENSRNOG00000006365 ENSRNOT00000060494 2 1 1 80 4 51637745 51637764 TGGTCAGAGATAGAGGAGGA 59 51637805 51638576 TGTAATGAACTCACAGAACGG 58 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822,ENSRNOT00000079452 2 2 2 80 9 92309239 92309259 TTGATAATGAGCAGCAGAGGT 60 92308617 92309199 TTAAACTCCGAAATCCTCCGA 59 NA Rattus norvegicus 81 AABR07072266.1 ENSRNOG00000029216 ENSRNOT00000052250 2 1 1 94 11 87768818 87769646 TGATTGGAGCAAACTTGCAC 60 87768743 87768761 GAGTGGAGTGAGTCCTGTG 59 NA Rattus norvegicus 81 Ankh ENSRNOG00000010960 ENSRNOT00000068484 3 1 1 87 2 80219266 80226177 TAGCTCAGGTTGTGTTCGT 59 80226227 80226246 ATGTACAGAGACAGGATGGG 59 NA Rattus norvegicus 81 Sftpb ENSRNOG00000010761 ENSRNOT00000014505 1 1 1 80 4 100167373 100167808 CATGCAGGAGCTAATGACC 58 100167852 100167870 GAAAGCGTCTTCCTTGGTC 59 NA Rattus norvegicus 81 Olr715 ENSRNOG00000057668 ENSRNOT00000084255 1 1 1 60 3 78595548 78595566 TTCTACTGCCATCTTGCCC 60 78595506 78595529 GGAAATGGTCTTCTTATCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 2 2 2 80 18 69764575 69764691 GATAACATGGCTCTACTGAAAGAC 59 69764518 69764537 CAGATCGTCATAGAGCTGGG 60 NA Rattus norvegicus 81 RGD1306739 ENSRNOG00000000634 ENSRNOT00000000785 1 1 1 80 20 21336511 21341770 TCTTCAAACGCTGCATATGTC 59 21341809 21341830 GAATGGTTTGGTCCAATTTCTG 59 NA Rattus norvegicus 81 Vom1r58 ENSRNOG00000049668 ENSRNOT00000048444 1 1 1 60 1 75131357 75131375 ATGCTTCCAAGTGACACCA 60 75131397 75131417 GGATACCAAGACAGAACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459,ENSRNOT00000040759,ENSRNOT00000047737,ENSRNOT00000051371 1 4 4 80 16 6179159 6179764 TGTGCCAGTAGGTGAAGAG 59 6179097 6179115 GAGATTCTTCGAGGACGGG 60 NA Rattus norvegicus 81 Ccnd2 ENSRNOG00000057710 ENSRNOT00000086440 3 1 1 80 4 159685693 159685711 CGAGGAAGTGAATGCACTC 59 159675571 159685650 TTGAGACAATCCACATCGGT 60 NA Rattus norvegicus 81 Mir344b-1 ENSRNOG00000049100 ENSRNOT00000071684 2 1 1 60 1 121193196 121193215 TGCTGGTTATATTCCAGGAC 57 121193155 121193175 TATTTAACAGTCGGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a45 ENSRNOG00000030616 ENSRNOT00000051979 2 1 1 80 1 221238965 221239173 TTTGACACTGTAAAGGTGCG 59 221239216 221239234 ATGGCGGTAAGTCTTGACC 60 NA Rattus norvegicus 81 Slc25a45 ENSRNOG00000030616 ENSRNOT00000051979 3 1 1 80 1 221238966 221239173 TTGACACTGTAAAGGTGCG 58 221239217 221239235 CATGGCGGTAAGTCTTGAC 59 NA Rattus norvegicus 81 Zfp111 ENSRNOG00000024376 ENSRNOT00000051473 2 1 1 95 1 81042336 81043334 AAGTTACAGGAGGCAGTGAC 60 81042260 81042278 GTGGTACAGCTTCCTCTGG 60 NA Rattus norvegicus 81 Mir344i ENSRNOG00000045909 ENSRNOT00000071136 2 1 1 60 1 122506603 122506621 CAGCTCTAAGCTGGATCCA 59 122506561 122506581 CTTCTCTATTGAGCAGAGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2g2 ENSRNOG00000001222 ENSRNOT00000001636 1 1 1 80 20 11704216 11704235 AGTTTCCCACTTGACTACCC 59 11702488 11704173 GTCAGGGTAGATGTTGGGA 58 NA Rattus norvegicus 81 Pick1 ENSRNOG00000011507 ENSRNOT00000016077 2 1 1 80 7 120466434 120466452 GAACCTGATTGGCATCAGC 59 120466494 120475519 GGCGTGTTATCAAATACCTGG 60 NA Rattus norvegicus 81 LOC687298 ENSRNOG00000032482 ENSRNOT00000047732 2 1 1 60 10 2229344 2229364 AAGCTGGCCAAACATAAAGAG 59 2229304 2229322 CAGCTCCTGTGTAGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etfb ENSRNOG00000017851 ENSRNOT00000024083 2 1 1 90 1 98472984 98473948 GCCCAACATCATGAAAGCC 60 98472912 98472930 GATCACGGAGACCTTGGAG 60 NA Rattus norvegicus 81 LOC100912257 ENSRNOG00000049493 ENSRNOT00000071378 2 1 1 60 4 1698072 1698091 AACTTGGCCTTTGTAGACCT 59 1698031 1698051 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tesl ENSRNOG00000033628 ENSRNOT00000044165 2 1 1 93 X 121054604 121066747 TGATCTGAAAGCAGATGGAC 58 121054530 121054548 AAGTGTAGCTCAAACCCTG 57 NA InUTR Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359 3 1 2 83 6 99434174 99434289 CGTTCAGAGTGATGAAGGAG 58 99434334 99434353 TGAAATAGGCAGGAACAGTG 58 NA Rattus norvegicus 81 Armc12 ENSRNOG00000000508 ENSRNOT00000000609 3 1 1 89 20 8110767 8110787 GCAAACACGATGCATATACCA 60 8110838 8111217 ATGTACAAGCAGAGGCCTC 60 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 1 2 2 121 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667142 51667160 TCCTCTGTAGACTCCTCCT 58 NA Rattus norvegicus 81 AABR07005667.1 ENSRNOG00000024217 ENSRNOT00000029967 1 1 1 80 1 193537773 193537793 ATCAAGAAGGTAGTGAAGCAG 58 193537834 193537868 GTTGCTGTTGAAGTCTTCCT 59 NA Rattus norvegicus 81 Nkg7 ENSRNOG00000017749 ENSRNOT00000023942 1 1 1 85 1 98493550 98493647 AGTAGCAGGTTATATCCACGTG 60 98493486 98493504 ACAGAACCAGGAAGCTCAC 60 NA Rattus norvegicus 81 Rab25 ENSRNOG00000023640 ENSRNOT00000032355 3 1 1 80 2 187904015 187904033 TGCTATTCCTGGAGACCTC 58 187903630 187903974 TTGCAAAGATCTCTTTGAGGAC 59 NA Rattus norvegicus 81 Higd2al1 ENSRNOG00000001071 ENSRNOT00000001416 3 1 1 60 12 4546467 4546485 ACCTATGGCCTTTACTGCT 58 4546509 4546527 TGCGCATCATTAGTTGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxf7 ENSRNOG00000023256 ENSRNOT00000033752 1 1 1 80 X 106052472 106052491 TCAAGAGCAGCAAAGAATGG 59 106049515 106052431 TCATCAAGGCATTTCTGAGAC 58 NA Rattus norvegicus 81 Ndufa5 ENSRNOG00000005698 ENSRNOT00000008325 3 1 1 81 4 51593431 51593449 TTTCCTAAACATGCAGCCT 57 51590958 51593387 CATCTGGTTCCAATTTGACC 57 NA Rattus norvegicus 81 Snapc2 ENSRNOG00000001056 ENSRNOT00000001398 1 1 1 80 12 2539036 2539056 GTATGGATGGATCTTGCTGAG 58 2538533 2538994 AATGGTGAGTACCTGGGAG 58 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796,ENSRNOT00000081866 3 2 2 80 1 241031976 241033654 GACCATGGGTGGAATATGAG 58 241031915 241031933 TGACCTCTTCCTTCACTCG 59 NA Rattus norvegicus 81 LOC502894 ENSRNOG00000051816 ENSRNOT00000091662 2 1 1 88 4 159638152 159639584 CTTCGGGAAAGGATGTACG 58 159638082 159638100 ATGGGACACTCTTCTCCAG 58 NA InUTR Rattus norvegicus 81 Tekt3 ENSRNOG00000027212 ENSRNOT00000038276 3 1 1 80 10 49496084 49499026 ACATTCACTTATCGAAGACCCT 59 49499066 49499085 TCTCCTTGATGGCCTTTCTG 60 NA Rattus norvegicus 81 Gnptab ENSRNOG00000005228 ENSRNOT00000006946 2 1 1 80 7 29009792 29009812 CCTGTCAGATAGAGAAATCCG 58 29009853 29010921 TCCAAACCTGTCAAATCCTG 58 NA Rattus norvegicus 81 Cadps2 ENSRNOG00000007636 ENSRNOT00000068404 1 1 1 80 4 50451154 50451173 GCTGCCTTGATCAATTACAC 58 50431810 50449126 GTTCATGGTCTCTGTTTCCT 58 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934,ENSRNOT00000064686 3 2 2 60 18 55871388 55871409 AAATACGTCATAGAGTCGTCAG 58 55871349 55871368 ACATAGTAGGTGAAGGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla3 ENSRNOG00000022268 ENSRNOT00000015767 2 1 1 80 7 125045607 125045626 GTGTATGCCTTACAGCTGTG 59 125045669 125047530 CTTCAGTCAGAGCTGTGCT 60 NA Rattus norvegicus 81 Wwp2 ENSRNOG00000012937 ENSRNOT00000018837 2 1 1 80 19 39612002 39612490 TATATCATGCTGCTGACTGAC 58 39612532 39612550 CTCATTGAAGCCATCCAGG 58 NA Rattus norvegicus 81 Mbd2 ENSRNOG00000011853 ENSRNOT00000016112 2 1 1 80 18 65814560 65825833 CGATGTCTACTACTTCAGTCCA 59 65825874 65825892 TCAACAGCATTTCCCAGGT 60 NA Rattus norvegicus 81 Mospd3 ENSRNOG00000001396 ENSRNOT00000001890 3 1 1 80 12 22166107 22166294 CATTGACATTGTGATACGGCA 59 22166336 22166354 TCAGATAGCTCAATGCGGA 59 NA Rattus norvegicus 81 Dock2 ENSRNOG00000006932 ENSRNOT00000059810 2 1 1 80 10 19516580 19519483 AGTTGGTGGTTCTTAAGGGAG 60 19516520 19516543 CATGGTATCGATAAGAAGGAAGTG 59 NA Rattus norvegicus 81 Olr471 ENSRNOG00000031124 ENSRNOT00000045693 2 1 1 60 3 73345284 73345305 TTTGTAAGTCCCATGTTGAACC 59 73345323 73345344 CGTGTTTCACATCCTTATTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a15 ENSRNOG00000026957 ENSRNOT00000037226 2 1 1 80 1 227035422 227035773 TCACTAACTGGGATGTGGG 59 227035360 227035381 CAATGACAGCAATGAAGAACTC 58 NA Rattus norvegicus 81 Olr865 ENSRNOG00000058382 ENSRNOT00000090022 2 1 1 60 5 137812398 137812416 AGAGATGGTGGACTTTGTG 57 137812356 137812375 CACAATGAGGGAGATTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina9 ENSRNOG00000042391 ENSRNOT00000012861 3 1 1 90 6 127664382 127664400 TGAGATGGGAATCCGAGAC 59 127663365 127664328 GTGAGCAGCCTTAGAAACC 59 NA Rattus norvegicus 81 Rps4x ENSRNOG00000029574 ENSRNOT00000051149 3 1 1 60 4 35730241 35730262 CTGGGTTTATGGATGTCATCAG 59 35730202 35730224 TCATAGATCAGACGGAAGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680097 ENSRNOG00000050933 ENSRNOT00000072286 1 1 1 60 17 43821379 43821398 ATCTCCGGTCTCATCTACGA 60 43821338 43821356 TCACGTTCTCCAGGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcc ENSRNOG00000033099 ENSRNOT00000064947 3 1 1 80 18 66622874 66628139 GACTTTGAAAGTGGAACACCC 60 66603851 66603872 GTATCAACTGGCCAATAACCTC 59 NA Rattus norvegicus 81 Ror1 ENSRNOG00000029449 ENSRNOT00000045987 3 1 1 80 5 119128855 119128874 AAGTGGTTTCTACCACTGGA 59 119129467 119207386 CATACTCGTCTGAGGATCCTG 60 NA Rattus norvegicus 81 L3hypdh ENSRNOG00000004503 ENSRNOT00000006284 1 1 1 91 6 94834152 94834170 CTTCGTGGAGTGTGAAGGT 60 94830585 94834098 CATCCACTGTGAGGTCTGAG 60 NA Rattus norvegicus 81 LOC100909736 ENSRNOG00000046241 ENSRNOT00000074921 3 1 1 60 3 158920184 158920206 CTGGAGGTCTTTGTTGTTATAGG 59 158920146 158920165 AGATGAAGATGGTGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534,ENSRNOT00000072803 2 2 2 80 17 90197779 90197797 GAATGGTCAAACAGGTTGC 58 90196488 90197736 AAACCTTATAACCAGCACCA 57 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 1 2 2 80 13 99273804 99273826 ACATCTTAGAGAAGTTCTCCACC 60 99272354 99273764 GGGAGAACTTCCTCTCCAG 59 NA Rattus norvegicus 81 Gadd45b ENSRNOG00000019822 ENSRNOT00000026871 3 1 1 81 7 11647417 11647860 AAACTGATGAATGTGGACCC 58 11647355 11647374 GCAGAGCAATATCATCCTCC 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253,ENSRNOT00000065448,ENSRNOT00000022331 1 4 4 80 1 200648282 200657931 TCGGAGGCTATAAGGTACGA 60 200648221 200648241 AGGTGTAATTGCCTTTGTCTG 59 NA Rattus norvegicus 81 Tbx6 ENSRNOG00000019771 ENSRNOT00000068543 1 1 1 113 1 198216629 198216726 CCAGAACCCTAGGATCACAC 60 198217691 198217709 AGTTTCCTCTTCACACGGG 60 NA Rattus norvegicus 81 Izumo4 ENSRNOG00000031950 ENSRNOT00000049766 1 1 1 80 7 11877733 11877836 TGTACTTCCCAGGATATTTCCC 59 11877674 11877695 CTATGATGGCATTCTGGATGAG 59 NA Rattus norvegicus 81 Arl9 ENSRNOG00000029628 ENSRNOT00000044441 3 1 1 81 14 33440894 33440915 AGCCAAGAAATACCTTCATCAG 59 33437259 33440854 TTCAAGATCCTGTTTGTTGGC 60 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 3 2 2 80 1 221743901 221743921 AGAAGATGAACCTCTTCATGC 58 221743960 221744084 ATGTTTCTGATCTGTTCCACTG 59 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 1 2 2 93 3 119676286 119676304 ATGAGGTCAAGTCAGTGGC 60 119676111 119676231 TCTTCATCAACTTCCCAGACC 60 NA Rattus norvegicus 81 RGD1559731 ENSRNOG00000004265 ENSRNOT00000005659 2 1 1 80 X 4734789 4737954 TCATCCTGCAGATCTTCCC 59 4737996 4738016 TACTGACCAGGAATCTACCAC 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 2 3 3 85 X 77119976 77119998 GGGAATGACATGTATTTCCTGTG 60 77120037 77135888 CTAGGGAAACTTTAATGTGATGGAC 60 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 2 3 3 80 14 33110731 33111751 CTACATAGTAGGAAGAGTCGGA 58 33111791 33111810 TCAGCATCAAACTCAAAGGG 59 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 3 3 3 80 14 33109300 33109318 GGAGTCTGATTACTGCACC 58 33109362 33110589 TTTAATGTGGTACCTGGCC 57 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 3 2 2 80 3 55971368 55971387 GAGGGAAGGATACAAATGGC 58 55972664 55972777 CAAAGACAACATGATGCCCA 59 NA Rattus norvegicus 81 Zbtb8a ENSRNOG00000008300 ENSRNOT00000010983 1 1 1 80 5 147565809 147565829 CTGAAGTGGATCCTGTTTCTG 59 147564221 147565768 GCAGATTGTCTGGAAAGCTC 59 NA Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 3 2 2 80 13 84776987 84777005 CTGAGCAAATTGCCCTCAG 59 84775812 84776943 CTTCACATACCGTTTCGCC 59 NA Rattus norvegicus 81 Cbx4 ENSRNOG00000046207 ENSRNOT00000075440 1 1 1 83 10 108196154 108196172 ATCGAGAAGAAGCGGATCC 59 108194633 108195962 TTCCCACGTGTTATATTTGGG 58 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000080241,ENSRNOT00000087636 3 3 3 80 2 62208527 62208547 AGGATCCCTTTGATACTTTGG 58 62208589 62211337 GTCTCAATGCAAACTGTGC 58 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 1 2 2 80 X 71615838 71616846 TACCTTGAGGTCAGTGAACG 60 71615777 71615795 ATCGTAGGGAGATGTGCTG 59 NA Rattus norvegicus 81 Xrn2 ENSRNOG00000011785 ENSRNOT00000016351 3 1 1 80 3 141252121 141252140 TCTCCAGGTTGTCAAGTAGC 60 141252177 141254290 TATTGAAGGACTAGAGTTACTCTGC 60 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754,ENSRNOT00000042372 3 2 2 81 10 104726562 104726580 CAGTCTGGCCAACTATGGT 59 104726386 104726517 TCTACCAATCTGGCTGCAC 60 NA Rattus norvegicus 81 Med22 ENSRNOG00000005059 ENSRNOT00000006720 3 1 1 81 3 4862472 4864528 TACTCGTCCAGCTCAAGTC 59 4862409 4862427 AATCTGTGTCGAGGTCCAG 59 NA Rattus norvegicus 81 Cox8b ENSRNOG00000014656 ENSRNOT00000019679 3 1 1 81 1 213648932 213650092 CACTTCTGCCATGGATCAG 58 213648869 213648887 GTGGGATAAGACCCATCCT 58 NA Rattus norvegicus 81 Olr1288 ENSRNOG00000057310 ENSRNOT00000085764 3 1 1 60 15 35685856 35685876 CTATTGTACCGATGCTGAACC 59 35685895 35685916 GCAATACTGACATCCTTATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap4e1 ENSRNOG00000022938 ENSRNOT00000037390 1 1 1 80 3 119525774 119525794 CCTCACCTTACTAGACATGGA 58 119525831 119528389 GAATACTCTCCTAATACCCAACTC 58 NA Rattus norvegicus 81 Olr1285 ENSRNOG00000052267 ENSRNOT00000080457 1 1 1 60 15 35789593 35789611 TCCCATCTACATACACCCA 57 35789632 35789653 GACAGAAGTCAATGAAAGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctu1 ENSRNOG00000018334 ENSRNOT00000024690 3 1 1 166 1 99602891 99602909 AAGATCTCTTCGGAGGCTG 59 99603039 99603783 GTCAGCATTGTGACCTGTC 59 NA Rattus norvegicus 81 Rft1 ENSRNOG00000021805 ENSRNOT00000035542 3 1 1 80 16 6717240 6718980 CGTAGTGAATGTCAGACTAACAC 59 6719020 6719038 CTCAGACAAGCTCTTCGGA 59 NA Rattus norvegicus 81 Ces2e ENSRNOG00000011635 ENSRNOT00000015724 3 1 1 80 19 93612 93632 TGTCTGAAGACTGCCTATACC 59 93674 94325 TCCATACCATCACAGGCAG 59 NA Rattus norvegicus 81 Cd2bp2 ENSRNOG00000017201 ENSRNOT00000023285 1 1 1 80 1 198637729 198637747 TGGACATGTTTGCTGAGGA 59 198637593 198637687 CAGCTGAATCTGCTTCTTCTC 59 NA Rattus norvegicus 81 Morc4 ENSRNOG00000060846 ENSRNOT00000089115 2 1 1 80 X 111158995 111159506 AAGCAACAAGTCGAGATTGTC 59 111157612 111157632 CTTTGGTGGGTTACTGAAGAC 59 NA Rattus norvegicus 81 Plrg1 ENSRNOG00000006655 ENSRNOT00000009113 1 1 1 80 2 182049394 182050148 GGAAACTCTACAGGGTTATCAG 58 182050188 182050207 TAACGAACCACTGATTTCCA 57 NA Rattus norvegicus 81 LOC299271 ENSRNOG00000026297 ENSRNOT00000035035 2 1 1 80 6 127548473 127548493 ATTTGAGGAAAGTGAGAAGGC 59 127546263 127548431 AGCCACCTCTTACTCATGG 59 NA Rattus norvegicus 81 Taf10 ENSRNOG00000019178 ENSRNOT00000025955 1 1 1 80 1 170585543 170585561 CAATGATGCCCTACAGCAC 59 170585316 170585499 GTGTACTTGCGATCCTTGC 59 NA Rattus norvegicus 81 Blmh ENSRNOG00000003563 ENSRNOT00000076686 2 1 1 81 10 63239948 63240269 AACAACGCAGGACTAAATTCG 60 63239887 63239905 TCTGGGCAAGTACGAACTG 60 NA Rattus norvegicus 81 Rn60_X_0733.3 ENSRNOG00000051047 ENSRNOT00000076926 2 1 1 60 X 72456452 72456471 TGAGGAATATGGTGCTGGAG 59 72456411 72456429 CTTGCCACAGTAATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clns1a ENSRNOG00000012788 ENSRNOT00000017702 1 1 1 80 1 162688879 162689679 TGATAAGTCAGCATTGGAGG 57 162689722 162689740 GAGTCTTCATCCTCAGGGT 58 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 2 2 2 102 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690390 23690408 TGTGGAACCTGAACACCTC 60 NA Rattus norvegicus 81 AABR07000738.1 ENSRNOG00000052999 ENSRNOT00000049208 1 1 1 60 1 24891316 24891334 ATCGCCTGAGGTTTCTGAC 60 24890085 24890103 GGATTTGGCCTGAAGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnj13 ENSRNOG00000016057 ENSRNOT00000021507 2 1 1 81 9 94490037 94490055 GACTGTCCAAGTGCAATCG 59 94487895 94489994 CAAAGGCACCTGTGATAAAGG 60 NA Rattus norvegicus 81 LOC100364629 ENSRNOG00000025713 ENSRNOT00000036335 2 1 1 60 3 21313321 21313341 ACCTGTCCTTCATTGATACCT 59 21313363 21313381 ATGTTGCTCAGCACTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gen1 ENSRNOG00000004667 ENSRNOT00000006470 2 1 1 80 6 36923234 36923252 AACCTGGCTACTCTGTTCC 59 36922003 36923191 CCTTAGGAGAACCTGGATGG 59 NA Rattus norvegicus 81 Rab2b ENSRNOG00000012488 ENSRNOT00000060467 2 1 1 80 15 28684798 28685014 ACATCACAAGACGTGAAACC 59 28684737 28684756 TAACCATGTTGGAGCTGGAG 60 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 2 2 2 115 16 20888686 20888704 AAGAGGAACTGGATTCCCG 59 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 LOC100910308 ENSRNOG00000046308 ENSRNOT00000002890 1 1 1 80 14 33973607 33973626 AAGTAACTCCGGAAGGACTC 59 33971782 33973565 TTGACTTGAGAAGCAACTCC 58 NA Rattus norvegicus 81 Tmem234 ENSRNOG00000049326 ENSRNOT00000074235 2 1 1 80 5 147805596 147810948 TTGGCATCAACAGATCTGAC 58 147810990 147811009 GACCTTCCCAACAATCAGTG 59 NA Rattus norvegicus 81 Ap3d1 ENSRNOG00000018977 ENSRNOT00000025878 3 1 1 80 7 11871608 11871627 TTGTGTTCACCATTCAGAGC 59 11871670 11871788 CTCCTTCATCATCCTTGGC 58 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 3 3 3 122 12 22753562 22753580 ATGACGACATCCGTAGAGG 59 22751133 22751549 TTTCATATTCCTTGAGCCGG 58 NA Rattus norvegicus 81 Fkbp4 ENSRNOG00000006444 ENSRNOT00000008737 2 1 1 80 4 161753935 161754630 CTTGTATTTGAGGTGGAGCTG 59 161753875 161753894 TATTCTGCGGATGATCCCAC 60 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000076099 2 1 3 80 9 94521499 94521517 GCTTTGTCATCTCAGCAGC 60 94521556 94522624 CTGATCAGACATTCTCATCTTCAG 59 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000075967 3 1 3 80 9 94542032 94542050 TGATGCAGTGAAAGAGGTG 58 94542091 94543169 ACACCTACAGATTTACTGAGAC 57 NA Rattus norvegicus 81 Il34 ENSRNOG00000017602 ENSRNOT00000023823 3 1 1 81 19 40890942 40896447 GGTTATACTGTCTTGGGATCCT 59 40896487 40896507 TCTTTATCTTGGGCCAGAGTC 60 NA Rattus norvegicus 81 Vom1r82 ENSRNOG00000060630 ENSRNOT00000073173 3 1 1 60 4 88120539 88120562 GGTCTTCTTTGTAGTCATGTACTG 59 88120578 88120599 TAACAGGATAGAGGTGGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962,ENSRNOT00000021258 1 2 2 80 9 112003151 112003557 GAAGATCACACCGCTATTGG 59 112003090 112003108 CTCTGTTGCGATGTCATCC 59 NA Rattus norvegicus 81 Tacstd2 ENSRNOG00000007740 ENSRNOT00000010156 2 1 1 60 4 98342343 98342362 CACATCCTCATTGAGTTGCG 60 98342302 98342322 CTAGGTCAGAGTGGTTGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp511 ENSRNOG00000018272 ENSRNOT00000046314 2 1 1 81 1 212360335 212360439 GGCAAGACATGTACCAGTG 59 212360484 212360502 CTCACCATGTGATCCTTCC 58 NA Rattus norvegicus 81 AABR07065493.1 ENSRNOG00000046275 ENSRNOT00000057179 2 1 1 80 6 131607165 131607184 ACAACTGGCTATAACCTGGA 59 131606131 131607125 AATGTAAATCTGATCTCCAGCC 58 NA Rattus norvegicus 81 Olr1582 ENSRNOG00000046512 ENSRNOT00000040596 1 1 1 60 13 91712094 91712114 ACCTTGTACCTTCTGACTCTG 59 91712133 91712154 GGTCCAGACGAATAATTGTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cadm4 ENSRNOG00000024243 ENSRNOT00000026793 2 1 1 94 1 81366695 81366804 GCTGGATGTGCAGTATTCC 59 81366862 81366880 CTGTGACAGCACATGTCAG 59 NA Rattus norvegicus 81 AABR07042361.1 ENSRNOG00000052690 ENSRNOT00000072808 3 1 1 60 X 153678130 153678148 AACACATGGAAACAACCCT 58 153678170 153678190 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 2 2 2 80 12 23789862 23814661 TGAAGAACGTGACAGAGCT 59 23814705 23814723 CAACCACGTTCTTGTAGGC 59 NA Rattus norvegicus 81 Sptb ENSRNOG00000006911 ENSRNOT00000009028 2 1 1 80 6 99703087 99703105 CAACTCATTGAGTGGCGTC 59 99701408 99703043 TCTTGAAACTTGGGTGGCT 60 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 3 2 2 80 3 148169775 148169795 AGTTTGACACTAAGGACCTGG 60 148169833 148169946 CAATCCAATGCTTCCTTAGAAGG 60 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070,ENSRNOT00000009114,ENSRNOT00000078744 2 3 3 80 10 86388740 86388758 TCAAATGGATGGCATTGGA 57 86388802 86389064 ACACAGTCACTCCATAGCT 58 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860,ENSRNOT00000065431 3 2 2 80 19 57101889 57101908 GCTCTATTTCGAAGAGCTGG 59 57101950 57103650 ACTCGGAATGAGATCTCCAG 59 NA Rattus norvegicus 81 RGD1566359 ENSRNOG00000047934 ENSRNOT00000075725 3 1 1 60 17 9457816 9457837 GTCTTGCAGATCTTGGTTATGG 60 9457777 9457797 CTGTGCATCATAGGGTAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 2 2 2 170 1 147764529 147808267 ACCTAATTAAGTGGAAGCAGG 58 147808397 147884080 GGACTTTAGCTGTGACTTCTG 59 NA Rattus norvegicus 81 Mafg ENSRNOG00000036697 ENSRNOT00000054970 2 1 1 98 10 109807526 109807626 CAAGGCCTTAAAGGTGAAGC 60 109807447 109807465 AGGTGCTGGTTCAACTCTC 60 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 3 2 2 80 1 273717500 273717518 CCCTGAGACGAATAGGACC 59 273716182 273717460 TCTGTAGTTCCATCCTTGTACTG 60 NA Rattus norvegicus 81 RGD1309108 ENSRNOG00000008138 ENSRNOT00000010743 2 1 1 80 8 45098164 45103557 CAAAGCAGCTCAAGAATTACC 58 45098104 45098122 AAGACTGACCTCTTGGGAC 59 NA Rattus norvegicus 81 Anks4b ENSRNOG00000046181 ENSRNOT00000075035 2 1 1 60 1 189940338 189940357 CACTCCTCTACATTACGCAG 58 189940377 189940398 GTTGACTAGAAATGAGATGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 1 2 2 80 10 109972710 109973948 TTCCCTGAAACCCAAATATGC 59 109972522 109972541 CCACGGCACAGATTAAACAC 60 NA Rattus norvegicus 81 LOC100911840 ENSRNOG00000019293 ENSRNOT00000026113 3 1 1 98 1 214018119 214024116 ACTTTGTTTCCAGAGACACCT 60 214018041 214018059 AAGCAGAGGTTCCGTAGAG 59 NA InUTR Rattus norvegicus 81 Ucn3 ENSRNOG00000017759 ENSRNOT00000023887 1 1 1 99 17 69960168 69965615 AAGTCCTCTTACAGGGAGC 58 69965678 69965696 TAGAACTTGTGGGAGAGGC 59 NA InUTR Rattus norvegicus 81 Olr830 ENSRNOG00000013367 ENSRNOT00000017843 3 1 1 60 4 148665466 148665484 TGGTTGTCTTTCTGTGGCT 60 148665507 148665526 TTAAGGAGCCAAGGTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm9sf3 ENSRNOG00000013443 ENSRNOT00000018043 2 1 1 80 1 260487073 260487093 TGTCTATGCTGCTACATCTCC 60 260484381 260487032 TTTATCCATCGCCTTCCTCC 60 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 3 2 2 81 16 24586316 24588409 ACTCAAACAGGACAGAGGA 58 24584350 24584370 ATCATCACTGAAATCCAAGGC 59 NA Rattus norvegicus 81 Nmu ENSRNOG00000002164 ENSRNOT00000002941 2 1 1 80 14 34359858 34367033 GTGGAATGAGATTCCTGAAGC 59 34371456 34371474 AGCTTCCTCAATGCAACAG 59 NA Rattus norvegicus 81 Olr1598 ENSRNOG00000046866 ENSRNOT00000048222 3 1 1 60 13 92359085 92359108 CACTCATAGCTGTTCCATATACTG 59 92359125 92359145 AGTGTGAATATGATGGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd7 ENSRNOG00000014097 ENSRNOT00000019104 3 1 1 80 19 39643453 39644029 GTTTAAGAAGGTCAATGCCAG 58 39643393 39643412 ATGGCGATATCGTTCTTGTG 59 NA Rattus norvegicus 81 mrpl9 ENSRNOG00000020869 ENSRNOT00000028316 2 1 1 80 2 195686060 195686275 AGAAATTGCTGAGACAAGAAGG 59 195687942 195687962 AGCTTCTCAGAAACTTCACTG 58 NA Rattus norvegicus 81 Creb3l3 ENSRNOG00000032202 ENSRNOT00000044484 1 1 1 80 7 11494467 11495252 CCCTCACCAAGTATGAGGA 58 11495295 11495314 TTCTGCTTTCTTGAGCTGAC 59 NA Rattus norvegicus 81 Olr868 ENSRNOG00000047897 ENSRNOT00000044946 3 1 1 60 5 137901092 137901111 GCTGCATACTTTCTTCACCA 59 137901051 137901071 GTAGTGGTTGACTTTGTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh3 ENSRNOG00000020129 ENSRNOT00000027273 2 1 1 80 19 38716790 38718958 CATCATCGAGAACCTGAAAGC 60 38719000 38719018 CCCTCGTAGTCAAACACCA 59 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576,ENSRNOT00000082855 3 2 2 80 11 87063331 87066618 GCAAAGAAATGGAGTCATGCA 60 87067014 87067033 GGACCTGATACTGCTTCTCC 60 NA Rattus norvegicus 81 RT1-T24-2 ENSRNOG00000000787 ENSRNOT00000061299 2 1 1 104 20 3248594 3248918 CTTTACCCGAACTGACCCT 59 3248986 3249004 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 RT1-T24-2 ENSRNOG00000000787 ENSRNOT00000061299 3 1 1 105 20 3248593 3248917 ACTTTACCCGAACTGACCC 59 3248986 3249004 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Sntb2 ENSRNOG00000020344 ENSRNOT00000027561 1 1 1 80 19 39176685 39176703 CAGGAAGGTCATCCCTCTC 59 39176744 39186849 AGCTCTATCAATCTGTTCTCCA 59 NA Rattus norvegicus 81 Olr660 ENSRNOG00000034028 ENSRNOT00000042848 3 1 1 60 3 77431755 77431773 GCCATCTGTAAACCTTTGC 57 77431796 77431815 TCAAGATAACACAGACCTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl11b ENSRNOG00000002097 ENSRNOT00000002869 1 1 1 121 14 36552532 36553687 GAAATGCAGGTAACCTCTACAC 59 36551700 36551718 CAACTGCTCATTGCAGCTC 60 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403,ENSRNOT00000064250 2 2 2 80 18 61335683 61340359 GATGGACCATATCAAGTCTATGC 59 61340396 61340417 CTCAAAGGCAAGTTTATACCCA 59 NA Rattus norvegicus 81 AABR07032229.1 ENSRNOG00000048302 ENSRNOT00000073388 2 1 1 60 18 55464384 55464402 CCCTTCACTGACCTTCCTC 59 55464424 55464444 GAACTTCAGGCATTTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irs4 ENSRNOG00000046790 ENSRNOT00000076904 3 1 1 80 X 113004713 113014357 CTCTCCGAAATGAGAGTGAC 58 113004652 113004670 ACGAAGATGGAGTTCTGTG 57 NA Rattus norvegicus 81 AABR07051563.1 ENSRNOG00000048070 ENSRNOT00000043097 1 1 1 84 3 17107902 17108123 GGTATCTGGTACCTGTGGG 59 17108170 17108189 GCTCATAGTGACCTTCTCCC 60 NA Rattus norvegicus 81 AABR07015015.2 ENSRNOG00000057505 ENSRNOT00000059247 3 1 1 60 14 45376075 45376093 GCAAATGGCACAGAAATGG 58 45376033 45376057 CCCTTAAGAGATTCGTATCTTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcm9 ENSRNOG00000003281 ENSRNOT00000004499 2 1 1 80 20 34915479 34919730 GCAAGTCTGGAGATGACCT 59 34915417 34915435 CTTCACAGCGCATATCTCG 59 NA Rattus norvegicus 81 Olr847 ENSRNOG00000046095 ENSRNOT00000075727 1 1 1 60 5 69178639 69178659 GCAAAGAGGTGTATGTATCCA 58 69178599 69178619 ACTGAATTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052523.1 ENSRNOG00000028543 ENSRNOT00000031418 1 1 1 60 3 59409211 59409229 CAATGTGGGTGATGAGGGT 60 59409251 59409271 CTCCAGTGCTTCTTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016863.2 ENSRNOG00000060401 ENSRNOT00000048713 1 1 1 122 15 2528905 2528923 TGTAATCTCCGTGAGCGAG 59 2529009 2531764 TTGATGCTGTTTCTGGCTC 59 NA InUTR Rattus norvegicus 81 LOC100361009 ENSRNOG00000048167 ENSRNOT00000046231 1 1 1 86 3 16610154 16709063 GTTGTCTGGCTTTACTGGAG 59 16883741 16883759 ATGGATTTGGGAGACTGGG 59 NA Rattus norvegicus 81 Ip6k1 ENSRNOG00000019932 ENSRNOT00000041402 1 1 1 80 8 116819442 116822187 AAACTCTACAAGTTCCTCCTG 57 116822229 116822247 GGTACCCATCTTCAAGTCC 57 NA Rattus norvegicus 81 Hspb1 ENSRNOG00000023546 ENSRNOT00000031555 3 1 1 125 12 23840633 23840651 CTCAGAGATCCGACAGACG 59 23839865 23840544 CTTTCTTCGTGCTTGCCAG 60 NA Rattus norvegicus 81 LOC100912420 ENSRNOG00000049595 ENSRNOT00000046638 3 1 1 60 5 69277429 69277447 TTGCTTCTTGGCATGATGG 59 69277387 69277406 AGTATCTCAGAGGGTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfaip8l2 ENSRNOG00000021100 ENSRNOT00000028642 1 1 1 80 2 196312692 196323737 GATCATGATTTGTTGGGCTG 58 196312631 196312649 CTACCTACTCTCCACCTCC 58 NA InUTR Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 1 4 9 80 9 81537220 81537240 AGAGTCACAGTAGTCTTCAGC 59 81537280 81543836 TTTGAACTCCTGCATGAACAC 60 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 2 5 9 80 9 81533018 81535392 CCCAGAATCAGGATACAATGTG 59 81535431 81535451 GCCTGATGCACAATAGAATCC 60 NA Rattus norvegicus 81 RGD1561465 ENSRNOG00000048439 ENSRNOT00000075506 1 1 1 60 5 150994751 150994769 AACATCAAGAACACGTCGC 59 150994709 150994727 TGGTAACACCTCGAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000074295 2 1 3 62 3 147478106 147479173 ATGGAGAACTTGAGCGGAG 60 147478062 147478081 CGAGAAGACAGATACAGGCA 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 RGD1564552 ENSRNOG00000045917 ENSRNOT00000050803 3 1 1 60 17 84704759 84704778 GGATTGAGCACATCGAACAC 60 84704718 84704737 TTCTCCTTCACCCACTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531,ENSRNOT00000081244 3 2 2 80 4 86430371 86430392 GACTGAGAAGATTGTGAGTCCA 60 86427663 86430331 CTGTTCAAACTTGATCGCCT 59 NA Rattus norvegicus 81 Rpl12 ENSRNOG00000016220 ENSRNOT00000021725 1 1 1 80 3 12011344 12011365 TGATGAGATTGTCAACATTGCC 60 12011403 12011566 AGGATCTCCTTGATAGTTCCAG 59 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530,ENSRNOT00000003438 3 2 2 90 17 90699337 90701030 AAGGATCTTACCAATCCTGGG 59 90701080 90701100 CATCACTGTCATATCTTCGGG 58 NA Rattus norvegicus 81 LOC688672 ENSRNOG00000046740 ENSRNOT00000071997 2 1 1 85 6 80023541 80023562 AACGAGACATCATGAGGGAG 59 80023610 80023628 CTGCACATCAATGCCTCTG 59 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 1 2 2 85 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404203 108417989 TGATCATTCCTCCCTGCTG 59 NA Rattus norvegicus 81 Enox2 ENSRNOG00000030622 ENSRNOT00000048498 3 1 1 80 X 136050754 136050774 AAGAACTTCTGTCACATTCGC 59 135972849 136050713 CAGGCGAATTCTGTAACCAG 59 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 3 2 2 82 2 198007495 198007514 AGATGAGGGCTTAGCATCAC 60 198007557 198007805 AGGACAGACCAGAAACATAGG 59 NA Rattus norvegicus 81 Acy3 ENSRNOG00000017901 ENSRNOT00000024112 2 1 1 80 1 219235118 219235495 CCACTACCTACAGCTGCAG 60 219235537 219235557 ATACTGTAGGACTCTGTCCCA 60 NA Rattus norvegicus 81 Agrp ENSRNOG00000039001 ENSRNOT00000059628 1 1 1 80 19 37526886 37526904 TCTGAAGAAGACAGCAGCA 59 37526642 37526842 TGTGGATCTAGCACCTCTG 59 NA Rattus norvegicus 81 Sema3d ENSRNOG00000007202 ENSRNOT00000009489 3 1 1 80 4 19232710 19232730 TACCTAAATCCCAACAAGCCT 59 19226834 19232670 CATCGGGTTTCAACTCTTCTC 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 1 2 2 80 10 13736556 13736682 ACTCTGAAGAAACGGAAGGT 59 13736725 13736743 AAGCCAAATCAGGATCCCA 59 NA Rattus norvegicus 81 Mir541 ENSRNOG00000036486 ENSRNOT00000054594 1 1 1 60 6 133892667 133892686 GAAGGGATTCTGATGTTGGT 58 133892709 133892727 GATTCTGTGTTCGCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxb2 ENSRNOG00000032137 ENSRNOT00000052350 2 1 1 92 1 237066950 237066968 GTCTCAGTTCCCACCTACG 60 237067029 237067047 TTCTCTATAGCGAACGGGT 58 NA DesignNoJunction Rattus norvegicus 81 Galntl5 ENSRNOG00000040301 ENSRNOT00000062026 1 1 1 91 4 6349546 6427687 AAGTACACCTATCCGGTCG 59 6349473 6349492 TGTCCTTGTCATACTGTCCA 58 NA Rattus norvegicus 81 Galntl5 ENSRNOG00000040301 ENSRNOT00000062026 2 1 1 92 4 6349546 6427687 AAGTACACCTATCCGGTCG 59 6349472 6349492 ATGTCCTTGTCATACTGTCCA 59 NA Rattus norvegicus 81 LOC100911109 ENSRNOG00000048056 ENSRNOT00000065052 3 1 1 80 3 151610496 151610514 CAACCTTCTCCCGATACTG 57 151610558 151610904 TGAAAGAAGAGGCTCAGGA 58 NA Rattus norvegicus 81 Pqlc3 ENSRNOG00000005126 ENSRNOT00000007071 1 1 1 80 6 42291884 42293853 CTAATGACCTGACAATTCTTCTACG 60 42291828 42291847 GGTAGTGAAGTACCGTTGCT 60 NA Rattus norvegicus 81 Irf9 ENSRNOG00000019478 ENSRNOT00000026364 1 1 1 80 15 34286441 34287410 CCACATACTTCTGTAGAGATTTGG 59 34287448 34287467 AGAAATGCAGTGTTGCTTGG 60 NA Rattus norvegicus 81 Ptprcap ENSRNOG00000021724 ENSRNOT00000029607 3 1 1 117 1 219404000 219405342 CATCGGATCAATGGCTCTG 59 219405423 219405441 GATGGTGACCACATTGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Enkur ENSRNOG00000018631 ENSRNOT00000025140 2 1 1 80 17 88086665 88095161 GCGTCCTAGGTACTCATCAC 60 88086604 88086622 CCCATGGTCTTCATCCCAG 60 NA Rattus norvegicus 81 Pcsk4 ENSRNOG00000016405 ENSRNOT00000022358 1 1 1 80 7 12247610 12247628 GGGTGACCAAAGGTTACCA 60 12247670 12247907 CATCAGGAAAGATCTGTCCCA 60 NA Rattus norvegicus 81 Olr1606 ENSRNOG00000006734 ENSRNOT00000008798 2 1 1 60 15 12261230 12261250 TTCTACACTATCCTCACACCC 59 12261190 12261209 CATCCTTGTTCCTCATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 2 2 4 65 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139590 81143903 AGATTCTTGCCTCCCACTG 59 NA DesignRelaxed Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 2 2 2 80 6 135235771 135244150 AATACGAGGGAGAAGACATCC 59 135235711 135235729 ATATGGTCCAGCGATTTGC 58 NA Rattus norvegicus 81 Med14 ENSRNOG00000003792 ENSRNOT00000066480 2 1 1 80 X 11055248 11055268 CCTCCTTCTCCTATAGGAGGT 59 11055309 11058144 CTTTGGAAATGGCTGTTGCT 60 NA Rattus norvegicus 81 Gpm6a ENSRNOG00000010731 ENSRNOT00000014312 3 1 1 82 16 39375817 39382177 AGCGCTTGGTTTATCATGC 59 39375753 39375771 ATGTACACTGGCAGTGAGG 59 NA Rattus norvegicus 81 LOC688776 ENSRNOG00000029859 ENSRNOT00000049703 3 1 1 60 13 69172221 69172240 AGAAGAAGGCGTATGTTCAC 58 69172180 69172201 ATCTTGTTGGCAACATCTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1631 ENSRNOG00000047042 ENSRNOT00000041030 1 1 1 60 15 27484724 27484746 GATTTATAGCCTTCGTAACTCGG 59 27484686 27484709 CATTCCTAACAGAACTTTCCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fignl1 ENSRNOG00000004440 ENSRNOT00000005857 2 1 1 103 14 91901803 91901824 GGTCATAATCAGCAGAGTTCTC 59 91898558 91898576 TTCTTCTGCCAGTCATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hadh ENSRNOG00000010697 ENSRNOT00000014658 3 1 1 81 2 236354246 236355492 AAGTTCATCTTAGACGGGTG 57 236354184 236354205 CCACCAAATTATTCATGGAAGG 58 NA Rattus norvegicus 81 Kcnk16 ENSRNOG00000006422 ENSRNOT00000008461 1 1 1 84 15 4478842 4479302 TACCATAGGTTATGGAAACCTGG 60 4479346 4479364 GAGTGGGATTCCCATCAGG 60 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989,ENSRNOT00000071215 2 2 2 135 3 172424588 172424609 CATGTTAATGGGTTTAACGGAG 58 172433195 172433308 CCACAATGGTTTCAATGGC 58 NA Rattus norvegicus 81 Lancl3 ENSRNOG00000003756 ENSRNOT00000005042 1 1 1 80 X 14476541 14476563 GTGCATATGTCTTCCTTCTTCTC 59 14476602 14490194 AGAACTGAGCAAACCTTTGG 59 NA Rattus norvegicus 81 Olr454 ENSRNOG00000056255 ENSRNOT00000090772 3 1 1 60 3 73115205 73115223 GATTCCCGACTCCATACAC 57 73115246 73115265 AGAGATCCAGGAATGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 2 2 2 81 7 12274714 12274733 ACTTAAGACAGGAGCTGAGG 59 12274485 12274670 TTCAGGACCTCCTTCATGC 59 NA Rattus norvegicus 81 AC107580.2 ENSRNOG00000053351 ENSRNOT00000089754 3 1 1 82 X 123866180 123866199 GCTTCCTCAGTGTAGAAGCA 60 123862782 123864131 CTTCCGAAACCATCTCTTCAC 59 NA Rattus norvegicus 81 Aanat ENSRNOG00000011182 ENSRNOT00000015221 1 1 1 115 10 105569876 105569894 CTCAGAGTTCCTAGGCTGC 60 105569973 105570861 CTGAGATAAAGGCTTCGCG 59 NA Rattus norvegicus 81 Ppfia4 ENSRNOG00000003494 ENSRNOT00000039540 1 1 1 80 13 51143610 51143631 TCTGAAGAGGCTGAACTATGAC 60 51143033 51143570 ACCAGCACATCCTTGATCTC 60 NA Rattus norvegicus 81 Gjb4 ENSRNOG00000026910 ENSRNOT00000037128 3 1 1 60 5 145417798 145417817 GAGTCTCATCTTCAAGGCTG 58 145417757 145417781 GTAAATGCAGTGGAAGATATAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srpx ENSRNOG00000039666 ENSRNOT00000045753 2 1 1 80 X 14162592 14171190 TCCTGTGTAGATATGGAACCTC 59 14162533 14162553 GACTGTCAGCTTATTAGGCTC 58 NA Rattus norvegicus 81 RGD1565607 ENSRNOG00000043303 ENSRNOT00000023213 3 1 1 60 1 169720999 169721018 TCTCCTGCTAGTGTTAAACC 57 169720958 169720978 TACTACCCTGTTCAACTTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp821 ENSRNOG00000000262 ENSRNOT00000000279 3 1 1 80 19 41944491 41944512 GAAAGAGAATTAGACAGTGCAG 57 41944044 41944452 ATTTAGGTTCTCTGTGACCTC 57 NA Rattus norvegicus 81 Slc7a12 ENSRNOG00000033830 ENSRNOT00000051741 1 1 1 80 2 88560192 88591528 CCAAGACCTTATAAGGTGCG 59 88560131 88560151 AATCACTGGTGTGAGAATGAG 58 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380,ENSRNOT00000090265 3 2 2 80 18 77369554 77371516 GGCTAGAAGAGGAGTGTGG 59 77369492 77369510 GCTCTTCTGTCAGAGTCCT 58 NA Rattus norvegicus 81 Prss41 ENSRNOG00000033690 ENSRNOT00000007039 2 1 1 80 10 13186033 13186765 CACACTGCTTTAGAAAGTTCCT 59 13185974 13185993 TCCAGAAAGAAGGCTTGGAG 60 NA Rattus norvegicus 81 Aven ENSRNOG00000006419 ENSRNOT00000065752 3 1 1 90 3 104113880 104113898 CAGTGAGTCACTGGTTCGA 59 104113952 104115685 TAAAGGAACTGCGGTCTGG 60 NA Rattus norvegicus 81 Cnpy2 ENSRNOG00000003549 ENSRNOT00000004895 3 1 1 81 7 2738992 2741279 TTGTGGAGGTTCCTTATGC 57 2741323 2741342 CCATACTCCTTCATTCGGTC 58 NA Rattus norvegicus 81 LOC100912339 ENSRNOG00000050082 ENSRNOT00000072310 2 1 1 60 3 72974596 72974615 TGGCAACTGAATGCTTTCTC 59 72974638 72974656 TTACAGATGGCTGCATACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgm1 ENSRNOG00000020136 ENSRNOT00000027315 3 1 1 80 15 34390083 34390103 CATAATCCTCTTCCTGAACCG 58 34389131 34390041 ACCTCAGGATTGTTTCCGA 59 NA Rattus norvegicus 81 Btbd18 ENSRNOG00000043106 ENSRNOT00000066606 3 1 1 114 3 72063565 72063583 TTCTGCAGCTTCATCACCA 60 72067517 72067535 AAGAAGGGACTACAGGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc5a12 ENSRNOG00000028008 ENSRNOT00000046937 2 1 1 80 3 101829038 101831098 ACAGAGCAGGATTACCTTGAC 60 101831138 101831158 GTCTTGCTTGAGTCCATTCTG 59 NA Rattus norvegicus 81 Olr377 ENSRNOG00000013198 ENSRNOT00000017615 1 1 1 60 1 230649499 230649519 CTGTGTAGGATTGGTAACTGG 58 230649459 230649479 AGTACGAATAAAGCCACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.3 ENSRNOG00000055012 ENSRNOT00000081249 2 1 1 80 17 89807469 89807487 ACACAAAGGATGCAATGCC 59 89803815 89807427 CAGGCAACAGTGATACATGTC 59 NA Rattus norvegicus 81 Fibin ENSRNOG00000004699 ENSRNOT00000006203 3 1 1 60 3 101546688 101546706 TGGAAAGCAAGTTCAAGCA 58 101546646 101546665 TCATTGAGTCTGCTTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 1 2 2 80 19 43936509 43937510 ATCATTCGGTGTATGATGTTCC 59 43936450 43936470 CATCATATGTTTCCTCACGCA 59 NA Rattus norvegicus 81 Arf5 ENSRNOG00000007806 ENSRNOT00000010429 2 1 1 80 4 55715894 55716435 GATCCTTATGGTTGGCTTGG 59 55716478 55716496 ATGGTGGTGACAATCTCCC 59 NA Rattus norvegicus 81 Usb1 ENSRNOG00000013216 ENSRNOT00000017960 2 1 1 80 19 10107849 10109143 TCACTACTTTCTACCAGGACC 59 10107789 10107807 GTCCCTCCAACTGTAGACG 60 NA Rattus norvegicus 81 Chpt1 ENSRNOG00000058271 ENSRNOT00000080939 2 1 1 80 7 29056735 29056754 GGACAAATTCCTGCTCTCCT 60 29055783 29056696 CACCGATAGCCATAAATACTGTG 60 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 1 2 2 80 1 80102730 80102749 ACGAATCCAACGATCATGTG 59 80102788 80103574 CCTCATTAGAACACTTGCTATCC 59 NA Rattus norvegicus 81 N4bp2 ENSRNOG00000027152 ENSRNOT00000031792 1 1 1 80 14 44064974 44067942 AGCCATATGTTGCTTTGTCTC 59 44064914 44064932 TCGGTTTGAACTTCCACCA 60 NA Rattus norvegicus 81 Apopt1 ENSRNOG00000011542 ENSRNOT00000015373 2 1 1 84 6 136207959 136210613 GTGCTATAACCGAGACTGGT 59 136210660 136210678 CTTGCTCCACATCCTCTCC 60 NA Rattus norvegicus 81 Fas ENSRNOG00000019142 ENSRNOT00000025928 3 1 1 89 1 252618625 252618643 GAATACCAAGTGCAGGTGC 59 252618696 252620657 TCTTCAAGTCCACACGAGG 59 NA Rattus norvegicus 81 Vom1r110 ENSRNOG00000060529 ENSRNOT00000078889 1 1 1 60 1 63185366 63185384 GAGGGTTCAACACATCCAC 59 63185408 63185426 GGCTTGAGATTCTGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ac ENSRNOG00000056411 ENSRNOT00000077985 3 1 1 123 17 44520748 44520766 CGAGGGACAACAAGAAGAC 58 44520853 44520871 ATATTAGGCAGGACACCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 2 2 2 82 3 120173630 120174692 GATTATTGGTGAAGGGCGT 58 120174736 120174756 CAATGTTCTGAACAACTCCAC 58 NA Rattus norvegicus 81 Mc3r ENSRNOG00000004451 ENSRNOT00000005871 1 1 1 60 3 170253298 170253316 TTATCAACAGCGACTCCCT 58 170253340 170253358 AAGATGTTGTCCATGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sardh ENSRNOG00000006916 ENSRNOT00000009555 2 1 1 80 3 5780445 5782421 ATGACATCAGGCGTTTCCA 60 5780383 5780401 TCTTGGCATAGGACTCGTG 59 NA Rattus norvegicus 81 Fam83f ENSRNOG00000018330 ENSRNOT00000024835 2 1 1 88 7 121908290 121909487 ATCTTACAGCTTTACCTGGAG 57 121909537 121909555 CTATGTCAAAGGGCTCCAC 58 NA Rattus norvegicus 81 Vom1r109 ENSRNOG00000056653 ENSRNOT00000088203 1 1 1 60 1 63264316 63264336 TCCAGTACATCCATGATTGTC 58 63264358 63264376 TGTGAATGTGTTGAACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otud1 ENSRNOG00000016950 ENSRNOT00000022734 1 1 1 60 17 86409355 86409375 GCAATGGACACTATGATGCAG 60 86409393 86409415 CAATTGTCATACTCTGGGTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdpr ENSRNOG00000022593 ENSRNOT00000038452 1 1 1 80 19 43111550 43111569 CAGGACTTAAACACCCTCAC 58 43110016 43111509 GATGAAGTCTATGCCCTTCTC 58 NA Rattus norvegicus 81 Slitrk2 ENSRNOG00000011562 ENSRNOT00000015401 3 1 1 112 X 151103929 151104441 CTCCTGATGTGTTTGCCTG 59 151104516 151104535 CTCGATCTGTAAGATCCCGG 60 NA InUTR Rattus norvegicus 81 Olr648 ENSRNOG00000059965 ENSRNOT00000089424 1 1 1 60 3 77048294 77048312 GCACCCATGTTCAATCCTC 59 77048334 77048354 GTAGGGCATTCTTCATCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurog1 ENSRNOG00000022405 ENSRNOT00000015916 1 1 1 65 17 9155567 9155585 TTTCTCCTTTCCTGGCCTG 60 9155614 9155632 TAGTGGTACGGGATGAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bace1 ENSRNOG00000016847 ENSRNOT00000022796 1 1 1 80 8 50160867 50160887 TCCCAGTCATTTCACTTTACC 58 50160928 50161169 GTAGGTATTGCTGAGGAAGG 58 NA Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 1 2 2 80 4 88712897 88712918 CAAGGAGTATTGGAGATTTGGA 58 88712958 88713826 CGTGGTAGAGCTTAATCCTG 58 NA Rattus norvegicus 81 Elac1 ENSRNOG00000000113 ENSRNOT00000000125 1 1 1 129 18 69711132 69716304 TAAAGCAGGGAGAATCACCA 59 69711022 69711040 GATCTCAATAGGCTGCCTG 58 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945,ENSRNOT00000083539 3 3 3 80 11 82765700 82768165 AAGTCTCAGGCTGAATGGAG 60 82765639 82765660 TAATCGATGAATACAGGTCCCT 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 2 2 2 80 1 84161758 84161866 GCTCCATCTATTATGTAGATGTGC 59 84161701 84161719 CTCGGTAGAGCTCACTGAC 59 NA Rattus norvegicus 81 Gpr34 ENSRNOG00000039759 ENSRNOT00000060988 3 1 1 189 X 10030525 10031157 CCTCAACTCAGTTCCTGTG 58 10024588 10024606 CAGCTGTCAACTGTAGTCG 58 NA InUTR Rattus norvegicus 81 AABR07020999.1 ENSRNOG00000026400 ENSRNOT00000035157 1 1 1 60 13 52413338 52413357 CTCCACTCAGGCTCATACAG 60 52413380 52413398 CCAACCTCTCGTTTCTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serping1 ENSRNOG00000007457 ENSRNOT00000009817 2 1 1 80 3 72167474 72167492 TCCACCAGACACTAAAGGC 59 72166463 72167431 GTATGGCTAGATCTGGGCTG 60 NA Rattus norvegicus 81 Fbxo15 ENSRNOG00000038225 ENSRNOT00000058199 3 1 1 80 18 81836190 81836211 CTGCAAGGCTATCATATGCAC 60 81836253 81836272 GGAGAAGAGATTGCGAAAGG 59 NA Rattus norvegicus 81 Lrrc42 ENSRNOG00000009983 ENSRNOT00000013575 3 1 1 80 5 126843364 126843383 GATCTATCTTGTTGCTGGCT 58 126842328 126843321 CTGAGTTACACTGGACAGG 57 NA Rattus norvegicus 81 Smarca1 ENSRNOG00000003762 ENSRNOT00000068478 1 1 1 80 X 134688481 134688503 CAGTGGAAGAAAGGATTGTAGAG 59 134687654 134688441 CAATGAGTCTCCCTTGCTG 58 NA Rattus norvegicus 81 Col9a3 ENSRNOG00000009531 ENSRNOT00000013105 2 1 1 83 3 176109378 176110052 GGTGAGAAGGGTAATCCTGG 60 176110228 176110246 TCCTTGCAATCCTCTTGGG 60 NA Rattus norvegicus 81 Olr1261 ENSRNOG00000049172 ENSRNOT00000075772 2 1 1 60 3 158887831 158887852 GTGTTCTTATCTCATGCTTGCT 59 158887872 158887891 AGTGTGGATCATAGCATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000064122 1 1 2 80 7 98679991 98680009 CTTCCACAATGCGATACCT 58 98675863 98679948 AATTCAATTTGGGTTCCTGC 57 NA Rattus norvegicus 81 Sf3b3 ENSRNOG00000017724 ENSRNOT00000023854 2 1 1 80 19 43396896 43396915 TGTGGTTGGAGTAGATGTGG 60 43396957 43397465 GGATCATTGTCTGCTTCCTC 59 NA Rattus norvegicus 81 Efna2 ENSRNOG00000016203 ENSRNOT00000021709 2 1 1 96 7 12383057 12383267 GTCCAACCAATGAGACCCT 59 12382979 12382997 GTAGTGAGGAAGAGGTGGC 60 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 3 2 2 81 4 57038553 57039557 GGGACTATGTGCTATGCCA 59 57039598 57039620 CGATTCTTGATCTCACAATCAGG 60 NA Rattus norvegicus 81 Olr1605 ENSRNOG00000021557 ENSRNOT00000029318 2 1 1 60 15 12129197 12129217 GAGGCTGTTTACAAGAACTCC 59 12129157 12129175 ATGTTGGGTGGGTGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcf2 ENSRNOG00000003435 ENSRNOT00000051550 3 1 1 80 X 143271174 143271195 TAACTTCAGATGCATACCAGAG 58 143265027 143271134 TCAGATCCACTTTGTCTTGC 58 NA Rattus norvegicus 81 Rnpep ENSRNOG00000006720 ENSRNOT00000009198 2 1 1 80 13 52105907 52106849 GCTCTTGTTGAGGTTCCAG 59 52105845 52105867 GAAGAACTTATTTGGTCCTCTCC 59 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422,ENSRNOT00000085465 2 3 3 81 20 35260834 35260852 ACGGGATGTTTACATTGCC 59 35260441 35260793 GTACAGATACTTCAGTGTCTCTG 58 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000078372,ENSRNOT00000029634 1 3 3 80 8 13892449 13892468 AGTGAGATGAAGGAGGACTG 59 13892154 13892407 TCCTTTCACCTTCCTGTCTG 59 NA Rattus norvegicus 81 Ins2 ENSRNOG00000020405 ENSRNOT00000027656 2 1 1 122 1 215857862 215857999 GCAAGCAGGTCATTGTTCC 60 215857758 215857776 TGAGAACCACAAAGGTGCT 60 NA InUTR Rattus norvegicus 81 Fam173b ENSRNOG00000022347 ENSRNOT00000046325 2 1 1 80 2 84679159 84682243 GGAAAGAGGAGAAACGCCT 60 84682284 84682305 GTCTTCAAACTGTCAGATTCCG 60 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330 1 1 2 80 9 113355585 113356147 GGTAGCAATGAGTTCTTGGA 58 113355524 113355543 GGACATATGAAGCATGTTGC 58 NA Rattus norvegicus 81 Usp8 ENSRNOG00000010729 ENSRNOT00000015124 2 1 1 80 3 119215845 119217560 GATCTAAATAAGGCTGACAATCGG 60 119217597 119217617 ATGTTCTGCCGCTTTAAAGTC 60 NA Rattus norvegicus 81 Havcr2 ENSRNOG00000031443 ENSRNOT00000048485 1 1 1 80 10 31563779 31566269 CACTGAACCAGCCAAAGTC 59 31566313 31566331 TCAGTGGTTAGGGTTCTGG 59 NA Rattus norvegicus 81 Magoh ENSRNOG00000012778 ENSRNOT00000017422 1 1 1 80 5 127480610 127480629 TACTACGTGGGTCACAAAGG 60 127480671 127482688 GGCATATCGCAATTTACCGT 59 NA Rattus norvegicus 81 Abhd3 ENSRNOG00000029370 ENSRNOT00000041878 2 1 1 81 18 1903742 1903761 GTTATCCACCACGTTCACAG 59 1898840 1903698 TCAGAAGCAGCATTCCTCC 60 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000076152 2 1 2 80 2 238605417 238606723 AAGCAGTGTAGAAGAAGTGTG 58 238606763 238606783 CGGAGGTTTAAAGTCTCAGTG 59 NA Rattus norvegicus 81 LOC500460 ENSRNOG00000005666 ENSRNOT00000007462 1 1 1 60 5 64615545 64615563 TTGATTCTCACCTGCACAC 58 64615503 64615521 ATGTCCAGAAAGGAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dot1l ENSRNOG00000032546 ENSRNOT00000051467 3 1 1 80 7 11815600 11817156 GACTATCCGATGGGTCTGC 60 11815538 11815557 TTGGTGTCGTAGTCGATCAG 60 NA Rattus norvegicus 81 Galnt15 ENSRNOG00000019718 ENSRNOT00000065618 1 1 1 80 16 8174618 8174636 TGATTCTGCAGAACTGCAC 59 8174679 8177713 GGATGATCAGTCCATCCTCC 60 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 2 3 3 81 13 113847488 113847506 ATGAAAGGAGACAGCAGTG 58 113844637 113847444 AGGATTTCACCTTGAAGCAG 58 NA Rattus norvegicus 81 Ccdc142 ENSRNOG00000022326 ENSRNOT00000035329 2 1 1 85 4 113939985 113940004 ATGTCATAAGCAAGCCACAC 59 113940052 113940373 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Slc9a3r2 ENSRNOG00000002997 ENSRNOT00000004172 2 1 1 82 10 14006005 14006023 ATACATCCGCTCTGTGGAC 59 14005720 14005959 GCCCATTCACCTCAATGAG 59 NA Rattus norvegicus 81 Capn1 ENSRNOG00000020935 ENSRNOT00000028431 1 1 1 80 1 221363276 221363297 CTATGAGTGGAACAAAGTGGAC 59 221363131 221363235 AAGGACATCCAGAACTCCC 59 NA Rattus norvegicus 81 LOC687088 ENSRNOG00000059135 ENSRNOT00000072772 1 1 1 60 1 230217219 230217241 AGAATAGGACAGAAGTGACAGAG 59 230217261 230217279 TGTAGGTGTGGGTCATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdca8 ENSRNOG00000031431 ENSRNOT00000048293 2 1 1 80 5 142931141 142932988 CTTGACTACTTTGCCCTAGG 58 142926244 142926265 GTTTATCTCTGTGATGTCTCGA 58 NA Rattus norvegicus 81 Mir6320 ENSRNOG00000046753 ENSRNOT00000075735 3 1 1 60 15 42959708 42959726 CAAGGCAGTTAAAGCCAGG 59 42959666 42959685 CAAGTGCTGAGATTACAAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxna1 ENSRNOG00000017003 ENSRNOT00000022951 2 1 1 80 4 121225968 121226098 GACTACAAGACCCTGACCC 59 121225906 121225925 ACAGTTCAGTCCCTTCACAG 60 NA Rattus norvegicus 81 En2 ENSRNOG00000006846 ENSRNOT00000008951 3 1 1 82 4 439336 439354 TACTGCACACGTTACTCTG 57 442528 442546 TTGTCCTCTTTGTTCGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Mir465 ENSRNOG00000040404 ENSRNOT00000062157 1 1 1 60 X 151297414 151297433 TATTTAGAACGGTGCTGGTG 58 151297373 151297393 TTACTCTACTCAGAAAGGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172,ENSRNOT00000087673 2 3 3 80 18 62932185 62932204 ATCCGGGAAGATAACAACAC 58 62932246 62938142 TCGTAACCACCTGTTATTCC 57 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000061249 2 1 2 95 17 6688532 6688550 GTTTGCTGACTACAGGCTG 59 6688607 6689006 AGCATTTCTCCTTCTAGAAGC 58 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321,ENSRNOT00000015482 2 2 2 80 3 149152564 149152582 AGCCAGCACTTTAATCTGG 58 149152626 149153504 CATGGCTTTCTCCAGAGTG 58 NA Rattus norvegicus 81 Kifc3 ENSRNOG00000014087 ENSRNOT00000066032 3 1 1 80 19 10329946 10329965 TGCTTAAGGAGATGGAGCAG 60 10330006 10330437 CCTCATACATGGCAATCTGAG 59 NA Rattus norvegicus 81 Sfta2 ENSRNOG00000048987 ENSRNOT00000074460 3 1 1 67 20 3605595 3605613 GATGTGCCTCTTCCTCCTC 60 3605337 3605355 GCAAAGTCACCTTTGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Thpo ENSRNOG00000046850 ENSRNOT00000072402 2 1 1 84 11 83872828 83873078 CTAGGAACCCAGCTTCCTC 59 83873126 83873144 GAAGCAGTTGTTGCAAGCT 60 NA Rattus norvegicus 81 LOC680384 ENSRNOG00000029278 ENSRNOT00000047850 1 1 1 60 4 31705014 31705033 AAGCGTAATGAGCATGAGGA 60 31705056 31705074 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf138 ENSRNOG00000015645 ENSRNOT00000021061 1 1 1 80 18 15162357 15162379 GGATGAATATGGTGTCTCTTCTG 59 15156812 15162320 GTTTCACTCCTATTACTGCTCC 59 NA Rattus norvegicus 81 Olr344 ENSRNOG00000030326 ENSRNOT00000051124 1 1 1 60 1 229824592 229824611 CAACCCAGAACTACAAGTCC 58 229824630 229824652 CAGTGTGATGAGATAGATGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ah ENSRNOG00000049649 ENSRNOT00000013790 2 1 1 60 17 43632618 43632637 CAAGAAGACACGCATCATCC 59 43632660 43632678 GAGTTCCTCATCGTTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serinc3 ENSRNOG00000009552 ENSRNOT00000013445 2 1 1 80 3 160031452 160032839 TGAAGAAGATTCCTGGATTCTG 58 160031393 160031411 GCACGTCACAGTCTTTCTC 59 NA Rattus norvegicus 81 Cdk19 ENSRNOG00000000583 ENSRNOT00000000713 1 1 1 80 20 45586442 45591429 AGAACAACGTATGCCAACAG 59 45591470 45591490 CAGAAGGAACACTTTGCTGTC 60 NA Rattus norvegicus 81 AC117925.7 ENSRNOG00000061571 ENSRNOT00000083404 2 1 1 176 4 114767025 114767043 AAGACCTGGTTCCAGAACC 59 114766789 114766807 GAAGAGTGACGAGTTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ppp1r12b ENSRNOG00000051440 ENSRNOT00000089068 3 1 1 80 13 51674956 51674974 GGAGGCAGAGTCTTTACGG 60 51668001 51674915 TCTGTTAGGGTAACACCTTGAG 60 NA Rattus norvegicus 81 Mccc1 ENSRNOG00000013293 ENSRNOT00000018942 3 1 1 80 2 122564058 122565641 CTCCACACTCAAGATCAATTCTC 59 122564000 122564021 AGTCATGTTCCTGGTGTAAGAG 60 NA Rattus norvegicus 81 Gja5 ENSRNOG00000017484 ENSRNOT00000023488 1 1 1 97 2 199162792 199181924 AAGGAAGCAGAAGGCTCAG 60 199181985 199182003 TAGAGTGCTTGTGGACCTC 59 NA InUTR Rattus norvegicus 81 Arl2 ENSRNOG00000021010 ENSRNOT00000028525 3 1 1 83 1 221507389 221507407 TGGAGAAGATGTGGACACC 59 221507235 221507344 CAGATGTTCAGCTTGAATCCC 59 NA Rattus norvegicus 81 RGD1309362 ENSRNOG00000038960 ENSRNOT00000043736 1 1 1 60 18 55506900 55506918 ATCCCTTCACTGACCTTCC 59 55506940 55506960 ACTTCAGGCATTTCTTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031019.1 ENSRNOG00000060785 ENSRNOT00000073032 2 1 1 80 10 112062320 112063732 AGGAGAAACATTGGTTCCCT 59 112063774 112063793 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 3 2 2 80 15 103329367 103329386 GCTTATGAAGCCAGAGTGGA 60 103327088 103329327 GTCAAACTCCTGATCAAGACTG 59 NA Rattus norvegicus 81 Amh ENSRNOG00000019377 ENSRNOT00000026220 3 1 1 98 7 11776761 11777112 TGGCTGAAGTGATATGGGA 58 11776681 11776700 GGTATAGCACTAACAGGGCT 59 NA Rattus norvegicus 81 Rn60_X_0773.5 ENSRNOG00000032807 ENSRNOT00000047432 1 1 1 60 X 77299111 77299130 CGTCCATCCAGATGAATGTG 59 77299070 77299091 AAATGACCATTAAATCGGCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frk ENSRNOG00000000543 ENSRNOT00000000653 2 1 1 80 20 41346836 41346855 GAGAAGTTTGGGAAGGTCTG 58 41346896 41352194 CATTTGGATCCATTGAACCTG 58 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910,ENSRNOT00000013937 3 2 2 80 4 28655987 28656005 GAAGCTTCTGGATGCTCAG 58 28654581 28655944 TTGCAATATGGACCTTCTCC 58 NA Rattus norvegicus 81 Fmo5 ENSRNOG00000018076 ENSRNOT00000024423 1 1 1 80 2 199815220 199815238 TAATTCAGCCCTTGGGAGC 60 199815280 199822209 TCTTTAGCCCTTTGAACACCT 60 NA Rattus norvegicus 81 Anapc4 ENSRNOG00000004130 ENSRNOT00000006093 2 1 1 80 14 60495402 60495425 GAGGAAGTTCTGGATTTATTGAGC 60 60494741 60495363 TACAAGTACCGGCAATCCC 60 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 1 2 2 80 20 46755060 46755079 TTGATACCTCAATGCTGCGA 60 46755118 46756236 CGTAGTCATAGTCATCGTATCGT 60 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 3 1 1 61 7 11625460 11626358 GATCGAACGCATCAAGGTC 59 11626383 11626401 CATGTTGCTCACAGTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 AABR07000156.1 ENSRNOG00000029897 ENSRNOT00000044523 2 1 1 60 1 1545789 1545810 AGGAAGATTATCAACAAGGGAC 58 1545825 1545849 GGCATAAGTTATAGCCATGTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir29b2 ENSRNOG00000035637 ENSRNOT00000053760 3 1 1 65 13 113782064 113782082 AAGCTGGTTTCACATGGTG 59 113782110 113782129 ACACTGATTTCAAATGGTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 1 2 2 86 7 60135865 60135883 CATCCTTCTGTGGGAAGTG 58 60134034 60135817 AGTATGTACTTGTTCCTCAGC 58 NA Rattus norvegicus 81 Mep1b ENSRNOG00000049345 ENSRNOT00000074116 2 1 1 80 18 15082634 15082655 GAGGAATTCCATCATTGGAGAC 59 15078431 15082594 GCATTCATTTCCAAGCTGTC 58 NA Rattus norvegicus 81 Olr1639 ENSRNOG00000050975 ENSRNOT00000044250 3 1 1 60 15 28785479 28785497 ACCTTTGTGGACATCGGAG 60 28785437 28785456 TGTAGGAAAGGAGGATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabif ENSRNOG00000004424 ENSRNOT00000005845 3 1 1 137 13 51317508 51317526 TGCAGAACGAGCTAGTGTC 60 51328896 51328914 GCTTCTTCCTCATGGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Habp4 ENSRNOG00000019027 ENSRNOT00000025801 1 1 1 80 17 1691926 1691944 CACCCATGGAAGAGACCTC 60 1691988 1697918 CCAACTCAGGGACTTTGGA 59 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 3 2 2 120 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044060 51044078 CCACACTCAGGTTGTTCCA 60 NA Rattus norvegicus 81 Dsg2 ENSRNOG00000016526 ENSRNOT00000022270 1 1 1 80 18 15609579 15613582 TCGCCAAGATACACTCTGAC 60 15609518 15609537 GCTCTGTAATTCCCTTCCCA 60 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 3 2 2 80 13 67602889 67602908 GAGTGACACTTCACATTTGC 58 67600981 67601632 TTGCTGAACTCTTTGGATCG 59 NA Rattus norvegicus 81 Hist1h1d ENSRNOG00000047459 ENSRNOT00000072564 1 1 1 60 17 43734770 43734791 TCCTTCAAACTCAACAAGAAGG 59 43734812 43734830 CTGCCTTCTTTGCTTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir140 ENSRNOG00000035609 ENSRNOT00000053732 2 1 1 60 19 39608985 39609006 CTATGGTAGGTTACATCATGCT 58 39609027 39609045 CTCCAGTATCCTGTCCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164l2 ENSRNOG00000009505 ENSRNOT00000012626 3 1 1 92 5 151414687 151416249 GACAAGTACGACAGGGAGTC 60 151416304 151416322 CTCAGTACCAGCACAATGC 59 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 1 1 1 60 8 117931580 117931598 TCACAGCAGTTACCTGAGC 60 117931396 117931557 CCATACACTGCTTCACTACC 58 NA DesignNoJunction Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 1 2 2 80 5 126671251 126671269 CGGTTTACACTACCTGGGA 59 126671310 126674108 TAAGTCATCTACTACACCTCGT 58 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 2 2 2 80 4 57830771 57832753 CTAAGTAAAGCAAGCAAAGAGG 58 57832793 57832812 TTTCTTCAGCACTAGTGAGG 57 NA Rattus norvegicus 81 Rn60_X_0718.1 ENSRNOG00000051198 ENSRNOT00000076206 1 1 1 60 X 70844286 70844304 CCAAGTCCAAGAACCACAC 59 70844327 70844346 TTGATGCCATTTCTGTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg4 ENSRNOG00000008862 ENSRNOT00000012534 3 1 1 80 8 48606616 48606802 CTATGTCAGGTATGGCTTTGAG 59 48606557 48606576 TGATCCTCTAAGCAGGTCAG 59 NA Rattus norvegicus 81 Olr271 ENSRNOG00000034061 ENSRNOT00000048478 2 1 1 60 1 172931698 172931718 ATGCCCAAATCTAACTACTCC 58 172931658 172931677 CCACCATGTAGAACACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bola2 ENSRNOG00000015333 ENSRNOT00000020553 1 1 1 60 8 60098391 60098409 GCTAAGTTCGAGGGAAAGC 59 60098349 60098367 CAGCTAAGCACTCGTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnptg ENSRNOG00000024455 ENSRNOT00000029674 3 1 1 82 10 14593523 14593541 TCACGGGAGGTACAAAGAC 59 14593371 14593477 TGAGAGTGGGTGGTTTCTG 59 NA Rattus norvegicus 81 Lrp8 ENSRNOG00000013064 ENSRNOT00000017575 3 1 1 80 5 127464427 127468697 GTGCCCATAGTGGTAATAGC 58 127468740 127468758 GCTCTTGGTATTCTTCCGC 59 NA Rattus norvegicus 81 LOC690384 ENSRNOG00000039487 ENSRNOT00000060519 1 1 1 60 15 28439629 28439647 CTGGTAACTTACGTGCCTG 58 28439668 28439689 TCTCATCCATATTGACCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4b2 ENSRNOG00000027655 ENSRNOT00000038297 2 1 1 80 4 156129148 156129167 ACAGGACTTTCAGATCAAGG 57 156129210 156131033 ATGCCAGAATGTGACACTC 58 NA Rattus norvegicus 81 Ltb4r ENSRNOG00000020399 ENSRNOT00000027647 3 1 1 60 15 34452397 34452416 GTGTCACTATGTCTGTGGAG 58 34452436 34452457 GCTCATGATAGTGATAAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf222 ENSRNOG00000022964 ENSRNOT00000038454 3 1 1 122 10 55478302 55478322 CATTAGGAAATGCCTCCACAG 59 55478404 55481658 ACTGAGATCCAAGTCTGAGAG 59 NA InUTR Rattus norvegicus 81 Dhrs2 ENSRNOG00000018177 ENSRNOT00000024483 3 1 1 92 15 33885365 33885383 TCAGCAAGAAAGTTCAGCC 58 33885439 33886699 AAAGCCAATCCCTCTTGTG 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000008074 1 1 5 197 8 6152524 6161630 TTTGCCATGAACCAGAGGA 59 6140368 6152363 GAGAGCTAATTCCTGCCGA 59 NA Rattus norvegicus 81 Col11a2 ENSRNOG00000000463 ENSRNOT00000085547 2 1 1 80 20 3834442 3835868 GATGATGAAGTCTTTGAAGGTG 58 3835908 3835927 CTGTCCACAAGACTGATAGG 58 NA Rattus norvegicus 81 Yipf1 ENSRNOG00000010512 ENSRNOT00000014091 3 1 1 81 5 126935980 126946584 TGAGACCGAGTTACTTGCC 59 126946627 126946647 GTCCACATCAAAGAACGTCTG 60 NA Rattus norvegicus 81 Arhgap15 ENSRNOG00000031168 ENSRNOT00000049884 3 1 1 80 3 28936033 28985529 GTCCTTCATGTTCAGACTGC 59 28985570 28985590 ATGAACTTCTTCAGTCTGCTC 58 NA Rattus norvegicus 81 LOC100909940 ENSRNOG00000053249 ENSRNOT00000080395 3 1 1 60 3 73668645 73668663 TTCATGCTTGCTGTGATGG 59 73668603 73668622 TATAGAGCAGTGGGTTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 2 1 3 114 2 261399455 261400617 AAATTGGAAATGGAGGATCGAC 59 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Cdk2 ENSRNOG00000006469 ENSRNOT00000031963 2 1 1 81 7 3126193 3126467 CTTGTTATCTCAAATGCTGCAC 59 3126133 3126152 ATCCTGGAAGAAAGGGTGAG 59 NA Rattus norvegicus 81 Mb21d2 ENSRNOG00000024040 ENSRNOT00000032569 1 1 1 110 11 75434432 75530657 TTTCCATGCTGGGAATGGT 60 75530731 75530749 CATCTAGGTCCAGGTCCAC 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 1 2 2 80 8 72743561 72743582 AAACATAAGAAGAAACGGCTGG 60 72743620 72744255 AGTAATCTTGTAGCAACCTGGA 59 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 2 1 1 65 1 13166123 13171412 AAATGCCGATGGGAAACTG 59 13166076 13166094 AGATTGGCACATCTGTCGT 59 NA DesignNoJunction Rattus norvegicus 81 Slc12a3 ENSRNOG00000057072 ENSRNOT00000081246 2 1 1 80 19 11140381 11140400 CATGGTGACATCTATCACCG 58 11140110 11140338 AGGAAATAGGTACCACCCG 59 NA Rattus norvegicus 81 Ankrd54 ENSRNOG00000010821 ENSRNOT00000014413 3 1 1 80 7 120286172 120287020 GGTGAAGCAGATCATCCAC 58 120286110 120286128 AGGTCATCTAGCCGTTCAC 59 NA Rattus norvegicus 81 LOC687896 ENSRNOG00000047331 ENSRNOT00000066983 3 1 1 60 10 60849880 60849898 TTCTGAAGTTAGCCTGCTC 57 60849919 60849940 CCTCCCAAGATAAATATCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 3 2 2 80 16 36055338 36060148 CAGTACTTCAAGAACCTGCAC 59 36060190 36060208 CACTTGATGGAGGACCTCG 60 NA Rattus norvegicus 81 Gramd4 ENSRNOG00000016968 ENSRNOT00000022746 3 1 1 80 7 127009229 127009247 TGCCTCATTAACCGAGACC 60 127009289 127010087 GCACAGGTAATTCTCTGTCAC 59 NA Rattus norvegicus 81 Ccl17 ENSRNOG00000016278 ENSRNOT00000021842 3 1 1 81 19 10619945 10619963 CCATTCCCATCAGGAAGCT 60 10619299 10619900 TGGACAGTCTCAAACACGA 59 NA Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 1 2 2 80 2 198833646 198833830 ACTTCCAATCCAGAGACCC 59 198833584 198833603 TCCACACCTCTATTTGTGGA 58 NA Rattus norvegicus 81 Vom2r65 ENSRNOG00000047177 ENSRNOT00000033032 1 1 1 80 14 221424 222822 GGAGAAACATTGGTTCCCT 57 222866 222884 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 1 1 1 66 1 229349181 229349199 CTTCATTCGATGCTCCTGG 58 229349873 229351031 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Fgf14 ENSRNOG00000009288 ENSRNOT00000041551 3 1 1 80 15 110550287 110550306 TTACTACTTGCAGATGCACC 58 110546683 110550244 ATGAGGTTGAACAGAGTGG 57 NA Rattus norvegicus 81 Ttr ENSRNOG00000016275 ENSRNOT00000022113 3 1 1 110 18 15533213 15536158 CATGAATACGCAGAGGTGG 58 15533121 15533139 GTTACTGACGACAGCAGTG 59 NA Rattus norvegicus 81 Nme7 ENSRNOG00000002898 ENSRNOT00000058897 2 1 1 80 13 82676072 82681018 GAGTATAATGACATGGTGACAGAG 59 82681057 82681075 CGTCTTCGTAGGATTGCTC 58 NA Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 1 2 2 80 8 48475090 48475198 TGCAAGTCTACAAGGCTCC 60 48475239 48475260 CCTTAAGCTCTTGTATGTCCAC 59 NA Rattus norvegicus 81 AABR07065656.7 ENSRNOG00000055719 ENSRNOT00000042728 3 1 1 67 6 138954278 138954301 GCCACTTATTACTGTACAACAGAC 60 138953961 138953982 CAAACACAGACAAAGAAACTCC 58 NA DesignNoJunction Rattus norvegicus 81 Xkr8 ENSRNOG00000024312 ENSRNOT00000017618 2 1 1 81 5 150923005 150924564 CGGCTACCTGTATAGGTGC 60 150922942 150922960 CAGGTCACATTCAGACGGT 60 NA Rattus norvegicus 81 Myh6 ENSRNOG00000025757 ENSRNOT00000023302 1 1 1 80 15 33625538 33625780 GCAGACATAGAGACCTACCT 58 33625477 33625500 GTAGAAGATATGGTAGTTCCTCTC 58 NA Rattus norvegicus 81 Olr1347 ENSRNOG00000047997 ENSRNOT00000051413 2 1 1 60 9 99735800 99735818 GTCATGTATGCTCAGCCAG 58 99735842 99735860 AGACAGAGACCACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb3a ENSRNOG00000002578 ENSRNOT00000003475 3 1 1 80 13 27154994 27155015 GAAATACCATACAAAGGCAAGG 58 27154321 27154955 TTCTTCAAGCTTCTTCAGACC 58 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 3 2 2 135 3 122942746 122943058 TCTCAATGCCAGGATGTGG 60 122942629 122942648 TTGTTCAGAACACAACGTGG 59 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729,ENSRNOT00000013459 3 2 2 80 5 129070499 129071686 AAATATTGATGCTGCTGTCCG 60 129071727 129071746 TAGCACATGTGGTGAAACTG 59 NA Rattus norvegicus 81 Zfp259 ENSRNOG00000018481 ENSRNOT00000025149 1 1 1 80 8 50566280 50566461 GACCTTAGAAACGAAGTGCTC 59 50566501 50566521 GACAAGCTTCATGTTGGTCTG 60 NA Rattus norvegicus 81 Mir223 ENSRNOG00000035505 ENSRNOT00000053628 2 1 1 60 X 65367829 65367848 TTACGCTCCGTGTATTTGAC 58 65367870 65367889 ACAAACTGACACTCTACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911837 ENSRNOG00000049255 ENSRNOT00000071462 3 1 1 80 11 85878265 85878284 GTTTGAAGGTATGGAGGACG 58 85872767 85878222 GTGTTGTTCCTCCACACTC 58 NA Rattus norvegicus 81 Smlr1 ENSRNOG00000047821 ENSRNOT00000071726 1 1 1 119 1 20856274 20856294 GATCTTCTTACAGGAACTCCC 58 20856374 20877360 TGTTCTTCAACTGCCATCAG 59 NA Rattus norvegicus 81 LOC685186 ENSRNOG00000030963 ENSRNOT00000041328 2 1 1 60 5 115649520 115649538 CATGTTTGTGATGGGTGTG 57 115649561 115649580 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682,ENSRNOT00000084986,ENSRNOT00000050284 3 3 3 80 13 52680090 52680109 GAGTATCCACAACCTGGAGG 60 52680152 52680431 CGCAGAACGTTGATTTCGT 60 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692,ENSRNOT00000072396 1 2 2 80 5 129276075 129277263 AGGAAATATTGATGCTGCTGTC 59 129277304 129277322 CACATGTGGTGAAACTGCT 59 NA Rattus norvegicus 81 Sdf4 ENSRNOG00000019981 ENSRNOT00000027215 1 1 1 80 5 173443522 173443542 ACAGGAAGAAAGAGTTTGAGG 58 173443583 173444055 CCATGTAGTTCTCCAACTCC 58 NA Rattus norvegicus 81 Spata6l ENSRNOG00000015137 ENSRNOT00000020464 2 1 1 80 1 247066500 247066519 CAGAGGAACCCTGGAAAGAG 60 247063923 247066458 GTTTCCACTGTCCACATGTC 59 NA Rattus norvegicus 81 LOC680200 ENSRNOG00000042308 ENSRNOT00000043747 1 1 1 80 1 37811655 37811677 CTGTTCAGTGGAATCTATACAGG 59 37811141 37811618 GCTTAGAGAAAGTTAGACCCAG 58 NA Rattus norvegicus 81 LOC680200 ENSRNOG00000042308 ENSRNOT00000043747 2 1 1 80 1 37811654 37811676 TGTTCAGTGGAATCTATACAGGG 60 37811140 37811617 GGCTTAGAGAAAGTTAGACCCA 60 NA Rattus norvegicus 81 Usp7 ENSRNOG00000025496 ENSRNOT00000046232 1 1 1 80 10 6998483 6998502 AATCAGCCACTTGTTCTTCC 59 6998543 6999612 TCAGGATCAGTCACTTCACTC 59 NA Rattus norvegicus 81 Wdr27 ENSRNOG00000015609 ENSRNOT00000021141 1 1 1 80 1 56934940 56939766 GGCACTTAAAGGGTTGACTC 59 56934879 56934899 TCTGGACTAAATCGCAAACAC 59 NA Rattus norvegicus 81 Vom2r6 ENSRNOG00000050370 ENSRNOT00000073546 2 1 1 80 1 747255 747273 ATCAGAAACAAACAGCCGA 58 745491 747214 GTTCCATATCTGTATCATTGGC 57 NA Rattus norvegicus 81 Cramp1l ENSRNOG00000024635 ENSRNOT00000022050 2 1 1 80 10 14328365 14331683 ATGTTGCAGAAGTGGTGGA 60 14328303 14328327 GGTCATTAAACCGAGATATGTAGTC 59 NA Rattus norvegicus 81 Orc1 ENSRNOG00000008841 ENSRNOT00000012492 1 1 1 80 5 128199972 128199991 CCATACTTCTATTCGTGCCC 58 128200033 128200540 TCATCTAGAAGCCAAAGCTG 58 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 1 2 2 80 11 70062386 70062404 GGAAACCTGACAACCAGAC 58 70060039 70062342 GGTCGTCTTTGACAATGCT 59 NA Rattus norvegicus 81 Rdh14 ENSRNOG00000039551 ENSRNOT00000006020 2 1 1 80 6 36107753 36111050 AAGAACTGCTACAGGAGGA 58 36111093 36111112 CAGTCTTCGTATATGGGCAC 58 NA Rattus norvegicus 81 Sbf1 ENSRNOG00000008392 ENSRNOT00000072955 2 1 1 80 7 130281133 130281233 TGTTCAGGAATAGCCTTGGT 59 130281072 130281093 GATTCCCAATCACATTCTCCAG 59 NA Rattus norvegicus 81 Adssl1 ENSRNOG00000046763 ENSRNOT00000073796 1 1 1 80 6 137203483 137203503 CCTGAGCGAGATTAAAGTTGG 59 137203543 137204933 AATATCTCCTGGTTAGCAGGG 59 NA Rattus norvegicus 81 Psmb1 ENSRNOG00000001488 ENSRNOT00000002037 3 1 1 145 1 57486272 57489585 AACGGAGGTACTGTATTGGC 60 57485382 57485400 CCACTGCAGCCAATTACTG 59 NA Rattus norvegicus 81 Smoc1 ENSRNOG00000005998 ENSRNOT00000007947 3 1 1 81 6 104862350 104862897 GACTTCCACACGCTATGTG 59 104862942 104862960 GTCCTTGAAAGGGTCATCC 58 NA Rattus norvegicus 81 Ly49s4 ENSRNOG00000051447 ENSRNOT00000090979 3 1 1 80 4 164486348 164486369 CGTGAATGTAAACAGACCTGTC 60 164476041 164486310 CTGAAGGAACTTCAGTTCATCC 59 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 3 2 2 80 2 256906228 256911026 AGATACCAGTTCGATTTCAGG 58 256906168 256906187 AATTCTGTCCTTCAGCAGTG 58 NA Rattus norvegicus 81 Coasy ENSRNOG00000019918 ENSRNOT00000027061 1 1 1 80 10 88995663 88995850 GTGGCTAAGGGAAAGACTC 58 88995892 88995912 CACCTCGTGTACCATATTCTG 58 NA Rattus norvegicus 81 Tenm4 ENSRNOG00000011151 ENSRNOT00000015181 2 1 1 80 1 161841381 161846863 GTCATGGATATTTCTCAGGTTCG 59 161846899 161846921 GAGGACATAGAGGGAATTATCCA 59 NA Rattus norvegicus 81 Ccdc174 ENSRNOG00000010090 ENSRNOT00000013498 1 1 1 80 4 123763329 123764236 CTAATAAGAAGCCAAGTATCTGGAG 59 123764274 123764292 CAAGCTTCTGTTCAGCGTC 60 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051323 ENSRNOT00000047933 3 1 1 60 8 40692147 40692170 CAATGTAATAATACCCAGCCTGAC 60 40692186 40692207 GATGTTGGAAAGAATCAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fryl ENSRNOG00000002248 ENSRNOT00000003061 2 1 1 80 14 37683789 37683807 CCGAGAGCATGGAAATCAC 59 37683846 37684645 CCTCTATTAATTCTCTGAAGGCTC 59 NA Rattus norvegicus 81 Epc2 ENSRNOG00000029447 ENSRNOT00000051953 1 1 1 80 3 33726853 33726874 TCTCACAACACTTACAGTTCCA 60 33726914 33727034 TCCATTATGACCCTTCCACC 59 NA Rattus norvegicus 81 Epc2 ENSRNOG00000029447 ENSRNOT00000051953 2 1 1 80 3 33726854 33726874 CTCACAACACTTACAGTTCCA 58 33726915 33727035 GTCCATTATGACCCTTCCAC 58 NA Rattus norvegicus 81 LOC100362926 ENSRNOG00000047155 ENSRNOT00000072301 2 1 1 60 7 3874393 3874412 AGGCAGTTCTTAGATTCCCT 58 3874352 3874370 GAAGAGCAGGTAGAGACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 1 2 2 80 2 266146428 266146446 CTGTTTGATGGACAAGCCC 59 266146490 266153477 AGTGCGGATGAATCTCCTG 60 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959,ENSRNOT00000076142 3 2 3 95 1 32573328 32573346 GAGAAGATCACGCATACCG 58 32573405 32574299 TCATCATACACCTTGCCAC 58 NA InUTR Rattus norvegicus 81 Fam43a ENSRNOG00000001728 ENSRNOT00000002355 2 1 1 60 11 73677673 73677691 TTAGTGACCTGGGTGACCT 60 73677631 73677649 CTTAAGTCGGACTCCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl9 ENSRNOG00000006335 ENSRNOT00000008510 1 1 1 60 5 107324806 107324827 ACAGTCTTCAGATTTGATCCTC 58 107324847 107324866 TTTCGTTTAATGATGCCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683745 ENSRNOG00000021575 ENSRNOT00000060160 1 1 1 80 13 56651009 56660683 ATGTTTACGGCAAGTGAAACC 60 56650949 56650968 TAGGGTCTTCGTCTCCTCTC 60 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000079879,ENSRNOT00000078885 2 4 4 83 8 117880997 117887824 TTCATAAGGGTGCTGTGAC 58 117880932 117880950 CAATGTGCATCTCAGGGAG 58 NA Rattus norvegicus 81 Arsk ENSRNOG00000026937 ENSRNOT00000029250 2 1 1 80 2 2857785 2858923 CTATGCTTGACATTGCTGGG 59 2857724 2857745 CAGATGTATTTGACGACAGTGG 60 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 1 2 2 80 10 86828576 86831055 CCACTCTCCGAATGTAAATCAC 59 86831092 86831114 CGAAATGACTTGGGATATGTGAG 60 NA Rattus norvegicus 81 Rn60_10_0698.8 ENSRNOG00000051295 ENSRNOT00000075956 2 1 1 60 10 70086588 70086609 AGTTCACTAAAGAAACTGGCTG 59 70086549 70086573 CAATCATGTCCACCTCTTTAATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp3 ENSRNOG00000013791 ENSRNOT00000018695 2 1 1 80 1 21658355 21658373 CTGCACTATGCCAAGAACG 59 21658417 21661477 CCCTTTGTTCCTGTAAGCC 59 NA Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 3 1 1 60 6 140980171 140980189 AGTTGTTGCTAAACTGGGT 57 140980005 140980148 TTCACCTCACACTGAATACC 57 NA DesignNoJunction Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 1 2 2 80 3 118128281 118128299 GGTGAGAAGGGAGAATGGG 60 118125093 118128240 CATTTCTGGAAAGTTTGTCAGC 59 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000000532 3 1 2 90 20 3975059 3975078 ACATCTCCTACAAGTACCGC 59 3974621 3975006 ATGGTTCCATACACCTGGC 60 NA Rattus norvegicus 81 Doc2a ENSRNOG00000019920 ENSRNOT00000027022 2 1 1 81 1 198287698 198287799 ATGACTTCATAGGTGGTGTG 57 198287843 198287861 GGCTGATGTAGACAGTCTC 57 NA Rattus norvegicus 81 Olr1007 ENSRNOG00000050845 ENSRNOT00000044587 3 1 1 60 7 6068579 6068599 TCGTGTCCTAGAAATGATGTC 58 6068618 6068639 TACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxxc5 ENSRNOG00000003734 ENSRNOT00000004958 1 1 1 80 X 134540231 134540249 GACTGGCCATCAGATTTGC 59 134540293 134541497 AGCATCACCTTCTCCAGAG 59 NA Rattus norvegicus 81 RGD1564318 ENSRNOG00000050000 ENSRNOT00000057971 1 1 1 60 11 86092679 86092698 GTTTGACAGCAGAACAGTGG 60 86092719 86092739 CCTTCATGTGTAACTTGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088678 1 1 6 60 1 41323703 41323724 AGAAATAGCTACGATTCACCTC 58 41323742 41323763 TAAGTATCAGTGACAGCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumo2l ENSRNOG00000032840 ENSRNOT00000049609 1 1 1 60 5 14983672 14983691 AACCAATCAACGAAACAGAC 57 14983712 14983732 TCAATCGTATCTTCATCCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumo2l ENSRNOG00000032840 ENSRNOT00000049609 3 1 1 60 5 14983673 14983693 ACCAATCAACGAAACAGACAC 60 14983712 14983733 ATCAATCGTATCTTCATCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337,ENSRNOT00000087621 2 2 2 80 X 29468243 29468261 CCAAGGATCCTTCAAGTGC 59 29468302 29473181 ACAGAATGTTCAGGAATCACAG 59 NA Rattus norvegicus 81 Khk ENSRNOG00000008047 ENSRNOT00000043572 1 1 1 80 6 26812426 26812444 GGTGTCCGTGGAGATAGAG 59 26811260 26812383 TCTTTGCTGACAAACACCAC 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000018925 ENSRNOT00000025584 1 1 1 138 1 253298332 253298354 TCAAGTTTGTAATGCTGGCC 59 253298213 253298231 AGGTGTAAGAAGCCTGTGG 59 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 1 2 2 97 7 12629115 12629585 CACCGATGTTGACATCGAC 59 12629646 12629664 ATTGTAGCAACTGCTGCAG 59 NA Rattus norvegicus 81 LOC100912204 ENSRNOG00000048626 ENSRNOT00000044928 2 1 1 60 11 43476342 43476360 AGAGTTTGTGCTTACAGGG 57 43476384 43476402 TAACAAGAACAAGGGCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tprg1 ENSRNOG00000001923 ENSRNOT00000002634 3 1 1 80 11 78795009 78822573 CTCCTGACAGAGATTGATCAC 58 78794949 78794967 TTTGCAGATCAAGAGGGTC 58 NA Rattus norvegicus 81 Cpe ENSRNOG00000043387 ENSRNOT00000064297 3 1 1 82 16 27002835 27002854 GTTCCCACCTGAAGAGACTC 60 27002899 27009171 CTCGGTGTATCTGCTCCAG 60 NA Rattus norvegicus 81 Olr1075 ENSRNOG00000039449 ENSRNOT00000060456 2 1 1 60 7 13404760 13404783 CCTCTCATATTTGGATTGTTCCTG 60 13404723 13404741 TGAGTAGGTTCCCAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc17 ENSRNOG00000012817 ENSRNOT00000017103 3 1 1 82 4 10120120 10120138 GGAAGCAGACTCCACTCTG 60 10113644 10120076 GGACTTTCTTCAGCTCTTTCC 59 NA Rattus norvegicus 81 Zdhhc19 ENSRNOG00000025055 ENSRNOT00000033026 3 1 1 80 11 71521492 71521836 GGATTTCCTTGTAGGTGGC 58 71521430 71521449 GAAGGTGAGGATGAAGAGTG 58 NA Rattus norvegicus 81 LOC100364733 ENSRNOG00000037495 ENSRNOT00000056771 2 1 1 86 6 143590312 143590414 TTGTCCCTGCATATGTCCT 58 143590244 143590262 AAGTCAGACTGAGGGTGTG 59 NA Rattus norvegicus 81 RGD1562299 ENSRNOG00000015249 ENSRNOT00000020499 3 1 1 89 9 15514540 15514558 GAGCTCTTTGCTGACAGAG 58 15514611 15516601 TCTGAGATGTAGCTCTGCA 58 NA Rattus norvegicus 81 Rpl7l1 ENSRNOG00000016269 ENSRNOT00000021803 2 1 1 86 9 16511461 16511479 GTCTTTGTCAAGGTCACCC 58 16511526 16512684 AGACTTCAGATTTGGAAATCCC 59 NA Rattus norvegicus 81 Hif1an ENSRNOG00000014234 ENSRNOT00000019070 1 1 1 82 1 264312464 264315092 CATGGAAGGGAATGTGACAC 59 264315136 264315155 AGATGCATCTCTTATGGCCT 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 3 2 4 80 4 163845294 163845313 GATGTAAACAGACCTGCCAG 59 163838420 163845251 GGAACCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 2 1 1 77 1 78808852 78808870 GGATCTGGCTCCTATGGAC 59 78808911 78810283 GCCTAAGGACTTGGGTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Raf1 ENSRNOG00000010153 ENSRNOT00000013831 1 1 1 80 4 147533098 147533116 GGCAATGAAGAGGTTGGTG 59 147532879 147533055 ATGGAAGACAGGATCTGAGG 59 NA Rattus norvegicus 81 LOC682102 ENSRNOG00000048129 ENSRNOT00000072793 2 1 1 80 5 146024115 146030387 GGGATATGGGTTCAACTCTG 58 146024054 146024072 AAGCGTATACCATTCCCAC 57 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 3 2 2 80 10 55493178 55493198 CGCTTTCCAAAGAACTGAGAC 60 55493239 55494306 CTCGAACAACCTGAACTTCG 59 NA Rattus norvegicus 81 Cct2 ENSRNOG00000021317 ENSRNOT00000037946 3 1 1 80 7 60112765 60112785 CTATGACAGTGCAGATCTGGT 60 60111963 60112724 TCCTTCATATCCAGTCCAGC 59 NA Rattus norvegicus 81 Crip1 ENSRNOG00000027990 ENSRNOT00000006835 2 1 1 80 6 137965330 137966453 GTGTATTTCGCTGAGCGAG 59 137966496 137966515 TGTCTTTCCACATTTCTCGC 59 NA Rattus norvegicus 81 RGD1563668 ENSRNOG00000038478 ENSRNOT00000058640 1 1 1 60 10 40994755 40994776 GATGCTTCTGTCAACTTCTCAG 59 40994716 40994734 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 1 1 2 168 9 15626099 15628717 GGACAACACCATTGACTTCC 59 15624547 15625973 GTTAATTGTTCTACTGACCTCCAC 60 NA Rattus norvegicus 81 Ear1 ENSRNOG00000025515 ENSRNOT00000021645 3 1 1 60 15 28260728 28260747 TCCGGCAAGGATTTATACCC 60 28260768 28260788 TGTGTAGAACTTCAACGATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49s2 ENSRNOG00000053772 ENSRNOT00000090110 3 1 1 80 4 164399251 164399269 GAGTGGATGTACCCAGACC 59 164396884 164399210 TGAAGGAACATCAGTTCATCCT 60 NA Rattus norvegicus 81 Tac3 ENSRNOG00000004229 ENSRNOT00000005679 1 1 1 87 7 71027181 71027802 ACAGAAACGTGACATGCAC 59 71028178 71028196 CTCTTCAACCACATCAGCG 59 NA Rattus norvegicus 81 Rho ENSRNOG00000011144 ENSRNOT00000064603 1 1 1 80 4 147835861 147836829 TGATGAACAAGCAGTTCCG 59 147836873 147836891 CAGAGGCCTCATCATCTCC 59 NA Rattus norvegicus 81 Mir30c2 ENSRNOG00000035562 ENSRNOT00000053685 2 1 1 60 9 29562388 29562410 CTGTAAACATCCTACACTCTCAG 59 29562430 29562448 AGTAAACAGCCTTCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpu ENSRNOG00000022261 ENSRNOT00000041596 3 1 1 80 16 48916349 48916368 GATGAGCTCTACAAGCACTG 59 48914014 48916307 AGAAGGGTTCAAGTTTCTGC 58 NA Rattus norvegicus 81 Ccr2 ENSRNOG00000059979 ENSRNOT00000078529 2 1 1 63 8 133195391 133195410 CTGAACTTGAATCGTCTGCA 59 133197034 133197058 CTGAGGTAACATATTACTGTCTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ak5 ENSRNOG00000046947 ENSRNOT00000072048 3 1 1 80 2 257739349 257744467 TCCGACAGATTCAAGTGAC 57 257739287 257739307 TTGTCATAATCCGATCCTGTG 58 NA Rattus norvegicus 81 Galnt1 ENSRNOG00000016207 ENSRNOT00000022117 3 1 1 80 18 16169928 16172346 TTTCCTTTAGGATTTGGCAGTG 59 16172386 16172405 TAGCTTTCCGAAACACATGG 59 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 2 2 2 82 1 105142216 105154152 ATTATATCAGAGTGGATGGGCT 59 105154194 105154213 GCCAAGTATTTGCTCTTTGC 58 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076225,ENSRNOT00000076545 2 3 3 80 1 48049611 48049632 TGGTAGGACATAACATGATGAC 58 48049673 48051105 ACTGATCGTAGCTTTCTGG 57 NA Rattus norvegicus 81 Rn60_X_0719.1 ENSRNOG00000051060 ENSRNOT00000076595 2 1 1 60 X 71042867 71042886 AAGACCTACAGCTACCTGAC 59 71042826 71042846 AAGGAGACTTGATGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas8 ENSRNOG00000026964 ENSRNOT00000029999 2 1 1 80 19 56330167 56330185 CAGTTCAATGAGGTGCTGG 59 56330228 56332801 TAGAACGTCCTCAAGTTTGC 58 NA Rattus norvegicus 81 RGD1561853 ENSRNOG00000050286 ENSRNOT00000070883 2 1 1 60 11 2813283 2813301 TGCTACCAAGCGATTCTCC 60 2813241 2813259 TTCAATGAGGTCTCCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dok4 ENSRNOG00000015679 ENSRNOT00000021037 2 1 1 80 19 10572252 10572270 CGGCTCAATGACATCAGTC 59 10572312 10572415 GACATTGAAGCGATCTGTCTG 60 NA Rattus norvegicus 81 Cutc ENSRNOG00000017298 ENSRNOT00000023396 3 1 1 80 1 263524926 263524946 GTTCTGGAGCTACAGAATTCC 59 263524987 263525861 TTGCAACAGAGGAATTTCGA 58 NA Rattus norvegicus 81 AC091336.1 ENSRNOG00000011234 ENSRNOT00000014930 2 1 1 60 1 60106260 60106280 GACTGAGGAACTTTCTCACTG 58 60106300 60106320 AGGAGAGGCATAACTTCATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000013073 3 2 3 82 4 61774331 61775590 TCATTGTCAGCAAGTTGTGG 59 61775635 61775653 CTTGAGATCCGTGAGGGTC 60 NA Rattus norvegicus 81 Slc34a1 ENSRNOG00000015262 ENSRNOT00000033749 2 1 1 80 17 9749636 9749654 TTGGTACCACCACTACAGC 59 9748731 9749593 AGAGGGCAATCTGAAAGGAG 60 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 3 1 2 61 2 95078045 95173486 ATGGCGAGAAGTACCAGAG 59 95173510 95173529 CGTCAGTTCAAGATCCAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Morn3 ENSRNOG00000045574 ENSRNOT00000074936 2 1 1 82 12 38975019 38975333 TTCCTAAGGTGGAGATTCTAGAC 59 38975375 38975393 GTCCTCTTCTTCCTCAGGC 60 NA Rattus norvegicus 81 Vamp3 ENSRNOG00000030055 ENSRNOT00000051554 3 1 1 80 5 168129531 168134547 AATCAAGTAGATGAGGTGGTG 58 168129471 168129489 TAGCTCTGAGAGCTTCTGG 58 NA Rattus norvegicus 81 Rn60_10_0701.3 ENSRNOG00000057143 ENSRNOT00000077901 3 1 1 60 10 70379754 70379773 GGGCTGGATATTGTAATGGT 58 70379713 70379731 TTGCATATTCGAGTCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg10 ENSRNOG00000016342 ENSRNOT00000021941 1 1 1 80 2 20076807 20076827 AAAGAAAGAGACTCCAACACC 58 19984643 20076765 AGCTCCAAGTTCTCCTCTG 59 NA Rattus norvegicus 81 Bhlha9 ENSRNOG00000022232 ENSRNOT00000032934 1 1 1 63 10 63499140 63499158 AAGCGTTTAATGCTCTGCG 60 63499095 63499113 ATCTTGGAGAGCCTCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362798 ENSRNOG00000026875 ENSRNOT00000034088 2 1 1 61 7 62317520 62317538 ATCCTGTGGGATTGGTGTG 60 62317477 62317498 GATATAAGACACCCAGTCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Got1 ENSRNOG00000016356 ENSRNOT00000022309 2 1 1 80 1 263253002 263253020 CCTATCGCTACTGGGATGC 60 263252703 263252959 AGAACTCAGGAGCATTCTCC 59 NA Rattus norvegicus 81 Tssk5 ENSRNOG00000013753 ENSRNOT00000018528 3 1 1 81 7 117437604 117437707 CTACCCGAGAACAGAAGCA 59 117437541 117437560 CTCCTGCTATACCTGGTGTC 59 NA Rattus norvegicus 81 Snai2 ENSRNOG00000047699 ENSRNOT00000073049 1 1 1 80 11 90406692 90406712 GTCAAGAAACATTTCAACGCC 59 90405964 90406654 GAGGTATGGAGAAATGATCACTG 59 NA Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 3 1 1 82 17 36906743 36915423 CTACCGGACAGACAGTGTG 60 36906679 36906699 AACATGTTACATGCGAACACC 60 NA DesignNoJunction Rattus norvegicus 81 Tmed11 ENSRNOG00000000035 ENSRNOT00000000040 1 1 1 82 14 1937157 1949921 GATAACAGGGACATTCAAGATACAG 60 1949959 1949979 CAAACATTCCTAAGCCAGGAG 59 NA Rattus norvegicus 81 LOC102553962 ENSRNOG00000046480 ENSRNOT00000074435 1 1 1 83 1 198831328 198831346 AGGAAGAGACCGAACTGTG 59 198830759 198831281 GTCTGCAATCTGAGTGGAC 58 NA Rattus norvegicus 81 Gsta5 ENSRNOG00000000201 ENSRNOT00000044944 3 1 1 80 8 85556158 85556177 GCTTCACTACTTCAATGCCC 59 85556218 85559033 TTCTCTTCAAACTCCACTCCT 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000029443 ENSRNOT00000050726 2 1 1 60 7 76980136 76980155 AAATACGGGCTGAACATGTG 59 76980178 76980196 TGAAGCCTATGTCCTTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909464 ENSRNOG00000016849 ENSRNOT00000022862 1 1 1 80 9 16605529 16605738 CTGCCTTGAAAGATTCGCC 60 16605782 16605800 AGTCAAAGAGGACACAGCA 59 NA Rattus norvegicus 81 Atp6v1g3 ENSRNOG00000022480 ENSRNOT00000029679 3 1 1 81 13 55284073 55287156 CAGTCTAAGATAATGGGCTCTC 58 55287195 55287216 CGCTCAATTCCTTTATCTTCTC 57 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 3 1 1 64 10 70303559 70303577 ACAGTGTTATGAAGCCGCT 60 70303605 70304886 CTCTGGGTTGGTTTCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Olr569 ENSRNOG00000046501 ENSRNOT00000007665 1 1 1 60 3 75772117 75772135 TTCTGTGATGTCCCTCCTC 58 75772154 75772177 CTAGTTCATTAACCTCCGTATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrna10 ENSRNOG00000020293 ENSRNOT00000027507 1 1 1 80 1 167207919 167208447 CACTCATCGGAAAGTACTATATGG 59 167207862 167207882 GCAGATTCATGATGAGGATGG 59 NA Rattus norvegicus 81 Tigd5 ENSRNOG00000008686 ENSRNOT00000056527 3 1 1 60 7 116943913 116943931 ACGAGCAGATCTACAATGC 58 116943955 116943973 TTCTGCTCCGGAAGTAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000078548,ENSRNOT00000008312 1 2 2 81 6 56011015 56011486 GTGTGAATGTTGTGTCCTCTG 60 56011529 56011547 TACAGAAGAGGAAGGCTGC 59 NA Rattus norvegicus 81 Olr1450 ENSRNOG00000033659 ENSRNOT00000044332 1 1 1 60 10 44680126 44680146 ATCCAAGCCTTTGTGTTTCTG 60 44680168 44680186 ACATGAAACCCAGCAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1104 ENSRNOG00000031284 ENSRNOT00000047272 1 1 1 60 7 139929357 139929376 AACTACAACTGTGAGCTTCC 58 139929316 139929335 CGTTAGTGGAGACATCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myct1 ENSRNOG00000018858 ENSRNOT00000025616 3 1 1 60 1 42121703 42121721 AACACCACGAGTTTAGGGA 59 42121743 42130763 AGGACATTATAAGGTCCTCCC 59 NA DesignRelaxed Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000089454 3 1 2 60 6 139636926 139636944 CAAATGGACAGTCTGAGGT 57 139636620 139636903 ATGATGTGTCTGTTGCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Kif14 ENSRNOG00000037211 ENSRNOT00000012038 1 1 1 80 13 53371178 53374066 AGGAATTACAGAAAGCAGGAG 58 53374108 53374126 GCTGTGGGTCTTCATTGAG 59 NA Rattus norvegicus 81 Gngt1 ENSRNOG00000010546 ENSRNOT00000014219 3 1 1 92 4 28972681 28972699 AACATCGAGGACCTGACAG 59 28972752 28975165 TTTGGAAACCATCACTCTTTCC 59 NA Rattus norvegicus 81 Elac2 ENSRNOG00000003424 ENSRNOT00000004722 2 1 1 80 10 51492566 51492584 ATTCAGACTCAGCTCAGCC 60 51492625 51492726 GGTAGAACCTTCCTCCTTACTG 60 NA Rattus norvegicus 81 Pcnxl2 ENSRNOG00000028580 ENSRNOT00000030077 3 1 1 80 19 58657700 58667997 GATGAAGGATTCAGTGAAGGAC 59 58657641 58657659 CTGACTGCAAAGGAGAGGA 59 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 3 2 2 87 9 17123718 17123736 GTCAGGTGTACCAGGAACC 60 17123784 17123881 TGTGCCTGGTATAAACTTTGTG 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742,ENSRNOT00000033017 2 2 2 80 17 1724324 1724345 ACACCTTTCAGATGTTGATGAC 59 1723493 1724284 TCATCACTATACGGCTCAGG 59 NA Rattus norvegicus 81 Slc1a6 ENSRNOG00000007509 ENSRNOT00000009931 3 1 1 80 7 13731976 13735303 ACCACAATCAGCATCACAG 58 13731914 13731933 AATCACCATGGTAACCAGTC 58 NA Rattus norvegicus 81 Cplx1 ENSRNOG00000000060 ENSRNOT00000061720 1 1 1 80 14 2219608 2219626 CGCAAAGCAAAGTATGCCA 60 2219665 2224838 CTTCTTGATGCCATACTTATCTCG 60 NA Rattus norvegicus 81 Cnpy3 ENSRNOG00000016315 ENSRNOT00000021868 1 1 1 80 9 16547663 16547681 GTGATTGACACAGGCTACG 59 16547722 16552909 TTCAATTAACCGTAAGTCCGAC 59 NA Rattus norvegicus 81 Reep5 ENSRNOG00000020167 ENSRNOT00000027345 3 1 1 80 18 27158704 27158722 TCTGGTGTTCGGTTATGGA 58 27141128 27158663 ATGGCTTTCATTGAGATGTAGG 59 NA Rattus norvegicus 81 Pddc1 ENSRNOG00000045795 ENSRNOT00000073220 1 1 1 80 1 213953639 213954395 TCCACTCTGAGAGCAAACC 59 213953577 213953598 AGGACCTATCTTCATTGGTAGC 60 NA Rattus norvegicus 81 Atxn7l3b ENSRNOG00000059744 ENSRNOT00000088732 2 1 1 60 7 55604091 55604111 AACCTGGATACTAACAAGCTG 58 55604051 55604075 CCTCTATCAGGTCTACATAGATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gfra1 ENSRNOG00000017438 ENSRNOT00000023667 1 1 1 80 1 279248431 279276958 GACCAATTACATCTGCAGATCTC 59 279248373 279248391 AGACAGTTGCTGACAGACC 60 NA Rattus norvegicus 81 Hs3st6 ENSRNOG00000014672 ENSRNOT00000052008 3 1 1 83 10 14123349 14123367 TCGACAGGTGCTATGATCG 59 14128288 14128307 TCTTCTCCATGGTGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07004112.1 ENSRNOG00000016498 ENSRNOT00000022127 2 1 1 81 1 125878137 125878156 ACTTCCATGGACTCTTACCG 59 125878194 125878219 CTCCACTCCTTATTAGAATGAACTG 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 2 2 2 80 2 200617477 200619808 CTAGATGTCAATGTGAAAGGTACTC 59 200617421 200617439 GCTGCTGTAGATGAAGGCT 60 NA Rattus norvegicus 81 Mir802 ENSRNOG00000040376 ENSRNOT00000062129 1 1 1 60 11 33570291 33570310 CTTGTGTCGATCATACAGCA 58 33570327 33570351 GGTGAAGGCTATTAATTACACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc25a ENSRNOG00000020737 ENSRNOT00000028141 2 1 1 80 8 117961206 117961773 GAGAATCTGAAGAATGATGAGGAG 59 117961809 117961830 TGTAGGTCTTCTCATGACAAGG 60 NA Rattus norvegicus 81 Llph ENSRNOG00000004316 ENSRNOT00000005794 3 1 1 115 7 65005946 65005964 ACCCAAACATTACCAGGAG 57 65008694 65008713 CATGCTGGTCTAGAAGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Senp3 ENSRNOG00000013746 ENSRNOT00000018670 3 1 1 80 10 56283512 56283533 CAGCACTGATGAAGTTGTAGAG 59 56283105 56283472 AGTACCAGACTCTTCCTGGA 59 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181,ENSRNOT00000085464 2 2 2 80 12 32598819 32601180 CCACTATCCAGATCCTGTCC 59 32601223 32601241 TGGTCACCTTCTCATCCAG 59 NA Rattus norvegicus 81 Mapkapk3 ENSRNOG00000014832 ENSRNOT00000020065 3 1 1 80 8 116015539 116015558 GAAGAGAAGGATTCGCTTGG 59 116014584 116015496 ATTAGCTGCTTGGCATCCT 60 NA Rattus norvegicus 81 Mettl4 ENSRNOG00000026280 ENSRNOT00000037587 2 1 1 80 9 119891072 119891091 CCAGATCAGAGGTTGATCGT 59 119891132 119895352 GTAGTCTTTCAGAACTTCGGC 59 NA Rattus norvegicus 81 Spem1 ENSRNOG00000015419 ENSRNOT00000020675 2 1 1 151 10 56429430 56429537 CTTAGTGACCCTGCTCTGG 60 56429126 56429145 TACATCGGAGATGGACTTCG 59 NA Rattus norvegicus 81 AABR07063855.1 ENSRNOG00000011040 ENSRNOT00000014668 2 1 1 125 6 52824059 52824077 ACTCCCTGGAAATGAGCTC 59 52823950 52823970 TCTTCTCAGTAGGGCAAGC 59 NA Rattus norvegicus 81 Palld ENSRNOG00000010107 ENSRNOT00000059673 3 1 1 80 16 31918146 31918164 GACGCTGTCATTCAAGACC 59 31918208 31921133 ATAGGTTAGCCTCGGTTGG 59 NA Rattus norvegicus 81 Ecscr ENSRNOG00000039593 ENSRNOT00000072580 3 1 1 80 18 28509356 28509375 GTTGTAGTGATCGTTCTGGT 58 28509101 28509315 TTTCTGTGGATCTTCAGACTC 58 NA Rattus norvegicus 81 Rgs1 ENSRNOG00000003895 ENSRNOT00000005251 1 1 1 89 13 61070015 61070033 TGGAATGGACATGAAAGCA 57 61069436 61069963 GCCGAAAGTATGTCTTTGGA 58 NA Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161,ENSRNOT00000057061 3 2 2 83 5 134737110 134737130 CATCATTGGTGTCTCTGTGTC 59 134737175 134738136 AAGATGAGGAGCCCAAGTC 59 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808,ENSRNOT00000072280 2 2 2 60 6 142418741 142418764 CAGACTAAAGGGTCATTGAAACTC 60 142418704 142418726 CATAGGTATCGAAGGTGAATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062211.1 ENSRNOG00000061664 ENSRNOT00000087219 3 1 1 80 4 165117996 165118015 TTCAGGGTTACAGAACCAGG 59 165115446 165117957 GGTAGATTAGAGTTTCCTCTGGG 60 NA Rattus norvegicus 81 Chmp2a ENSRNOG00000043328 ENSRNOT00000030931 2 1 1 80 1 65543073 65543167 ACAGACAGCTGAAATTACCC 58 65543207 65543228 CTTCCTTCATGTCCATGATCTC 59 NA Rattus norvegicus 81 Mir349 ENSRNOG00000036516 ENSRNOT00000054623 1 1 1 76 7 130146590 130146609 CTCTAGCATGTAAGGTTGGG 58 130146533 130146551 AGAGGTTAAGACAGCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000,ENSRNOT00000022801 2 2 2 118 5 59021756 59021774 TTCAGCTCGTAGAGGAGGA 59 59021553 59021677 CTCAATGACCTTCATTCCTCTC 59 NA Rattus norvegicus 81 Lrtm2 ENSRNOG00000007508 ENSRNOT00000010238 2 1 1 82 4 151381694 151384232 GACAGCTCTCCTGGATCAC 60 151381630 151381650 GTCACATGTGCAAGAGAAAGG 60 NA Rattus norvegicus 81 Hist1h2af ENSRNOG00000022146 ENSRNOT00000022965 3 1 1 75 17 43627507 43627526 TCTACAAGGGCAACTACTCG 59 43627451 43627469 GTCAGGTACTCCAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gng3 ENSRNOG00000019570 ENSRNOT00000026539 1 1 1 80 1 225035038 225035057 TATGAGTATTGGCCAAGCAC 58 225034707 225034995 GCCTTGGACACCTTTATCC 58 NA Rattus norvegicus 81 LOC100910410 ENSRNOG00000045544 ENSRNOT00000074821 1 1 1 80 9 16825846 16825864 TGGTACTGAAGGACTGGAG 58 16825908 16826329 GAAGAGCTTCAGCACAAGG 59 NA Rattus norvegicus 81 Mars2 ENSRNOG00000050002 ENSRNOT00000075508 3 1 1 60 9 64436437 64436457 GTGTTTGGAACTTTGCTTCAG 59 64436477 64436497 GTCTTGACAGCAACTTATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc9 ENSRNOG00000051682 ENSRNOT00000086300 3 1 1 96 2 20910546 20912023 GAACTCAGATCGAATCATCACAG 59 20910472 20910492 TTTAGGTTTCTGTGGTTTGGG 59 NA Rattus norvegicus 81 Ctsr ENSRNOG00000017888 ENSRNOT00000024115 1 1 1 80 17 3887301 3887319 GCACAACAGGGAGAATAGC 59 3887362 3887475 AATTCTTCAGCAGTCAGGTC 58 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 2 1 1 60 7 122456932 122458215 ATAATCTCACATTGCCGGG 58 122458236 122458257 ATGATGTTGATGTAGGAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000048908 1 1 2 104 6 142635626 142635725 AGCTACATGTGTCCACTCC 59 142635540 142635558 AATGTGTAGCCAGAAGCCT 59 NA Rattus norvegicus 81 RGD1562963 ENSRNOG00000039379 ENSRNOT00000060340 3 1 1 81 17 21604708 21608984 AAGACTTTCTCAGAGACCCA 58 21609028 21609046 TAGAGCTCTTCCCTTACGG 58 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 1 2 2 80 14 77314621 77314727 GAAGTTTCAGAACTGGATGAGG 59 77314562 77314581 TCGGAGAAGATGTTCCACAC 60 NA Rattus norvegicus 81 Apcdd1 ENSRNOG00000043304 ENSRNOT00000067554 2 1 1 107 18 58285698 58285716 GTAGAGGAGCTCTTCCTGG 59 58285787 58297155 ATGGTTGTGATTCTTGGCG 59 NA Rattus norvegicus 81 Arl4a ENSRNOG00000004282 ENSRNOT00000005800 3 1 1 60 6 59949261 59949280 GGGATGTAGGTGGTCAAGAG 60 59949220 59949240 TCTGTGCATCGGGTATATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309104 ENSRNOG00000028236 ENSRNOT00000059807 2 1 1 88 13 69288210 69295411 AGAGCAAACATGCACATCTC 59 69266836 69266855 TCAGAACAGTAATCCCGACC 59 NA Rattus norvegicus 81 Sostdc1 ENSRNOG00000005770 ENSRNOT00000008106 1 1 1 80 6 55813026 55813044 ACAGCACCTTGAATCAAGC 59 55813085 55815663 CCACTTGAACTCGACTATTTCG 60 NA Rattus norvegicus 81 Tmem173 ENSRNOG00000042137 ENSRNOT00000068386 3 1 1 80 18 28530307 28530710 TCATTGTCTACCAAGAATCCGA 59 28530248 28530267 TTTCTTCTTGCCGAATGTGC 60 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000045539 ENSRNOT00000057475 2 1 1 80 4 117620585 117620818 CGTCGTGTCAGAAAGAACC 59 117620523 117620544 GACTTGTTCTGTAAGATGTGCT 59 NA Rattus norvegicus 81 Rn60_1_0913.3 ENSRNOG00000051350 ENSRNOT00000076449 3 1 1 60 1 90123308 90123326 GGCAACTTTATGAAGCCCA 58 90123266 90123284 CCACCCTGTTACTGTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp353 ENSRNOG00000050804 ENSRNOT00000072732 1 1 1 60 5 108746739 108746759 ACTCTCAGATACCAAACTCCA 58 108746699 108746719 GATGTTGTTCTCTTAGTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2c ENSRNOG00000008956 ENSRNOT00000012088 1 1 1 85 5 129351827 129351848 GAGCAACTTACTAGTTTGTTGC 58 129348492 129351781 AGTTTCATAACCTGCAGCG 59 NA Rattus norvegicus 81 Gdap1 ENSRNOG00000005850 ENSRNOT00000007994 1 1 1 80 5 1332072 1333151 AGAAACTCCAGATGAGGGC 59 1332010 1332029 AATGTGACAGCCAATGAGAC 59 NA Rattus norvegicus 81 Anxa11 ENSRNOG00000010984 ENSRNOT00000014941 3 1 1 80 16 3870763 3870781 CGAGACATCGAGAAGAGCA 59 3869793 3870720 CTTGAGGCATTTCACCACAG 60 NA Rattus norvegicus 81 Pcdhb22 ENSRNOG00000020028 ENSRNOT00000027133 1 1 1 60 18 30593215 30593234 TAGAGACTAGCCCTGTTGAC 58 30593257 30593275 CCCACATCCAAATCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aars2 ENSRNOG00000025808 ENSRNOT00000031549 1 1 1 80 9 17873507 17873528 CCAACTTCTATGCTGAACAAGG 60 17873339 17873466 GGAACAACACATCCTGCTG 59 NA Rattus norvegicus 81 Sf3b6 ENSRNOG00000046172 ENSRNOT00000075790 1 1 1 81 6 29991545 29991568 ACCTATCAGGGACGTTGTG 59 29991374 29991392 TTGGTGTCCATCTTCTGGA 58 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945,ENSRNOT00000006162 3 2 2 80 3 1802330 1803162 ATGATGAAGTTCTACGATGCC 58 1802270 1802290 AGAGAACATGGATGTGAAGAC 58 NA Rattus norvegicus 81 Glod5 ENSRNOG00000039571 ENSRNOT00000008648 3 1 1 80 X 15225724 15228237 TGAGAGTCCGTTATGGAGGA 60 15228280 15228298 ACGGTCATCACAATGTGGT 60 NA Rattus norvegicus 81 LOC100361056 ENSRNOG00000013510 ENSRNOT00000018040 3 1 1 150 4 10822746 10822764 CAAACTGGCGTATTTCCCG 60 10819128 10819146 CCAGGTGAGCAGTACTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fth1 ENSRNOG00000022619 ENSRNOT00000030919 1 1 1 80 1 226032377 226032396 GGGAACATGCTGAGAAACTG 59 226032435 226032705 GGTCAGGTTTCTTTATATCCTGC 59 NA Rattus norvegicus 81 Vom2r70 ENSRNOG00000049387 ENSRNOT00000074712 3 1 1 80 14 314850 314868 AAACAAACAGCAGACTGCT 58 314910 337284 CTGTTCCATATCTGCTGTCTC 58 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675,ENSRNOT00000005478 1 2 2 80 10 17262117 17269034 AGAAGAAATCAGGGAGTGACC 60 17269073 17269094 GCTTCTGATAGTTTGCTACCAC 60 NA Rattus norvegicus 81 Pde3b ENSRNOG00000011417 ENSRNOT00000015498 1 1 1 80 1 184055488 184055508 TTTGACAACACGACCAATTCC 60 184055547 184060987 CTAGCATCTGAATCTGCTTTGG 60 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810,ENSRNOT00000039677 3 2 2 80 1 217650595 217653044 GAATGAGACAAGAGATGTGCT 58 217650535 217650553 GCAAACTCTTTAAGGCCGA 59 NA Rattus norvegicus 81 Olr1509 ENSRNOG00000027806 ENSRNOT00000026926 2 1 1 60 10 60942173 60942193 TATAGAACCCAAACTCCACAC 58 60942133 60942152 ATCCAGCATAGACAAGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911959 ENSRNOG00000015409 ENSRNOT00000020785 1 1 1 80 4 157334844 157334862 CATTAGTCACATGGGCACG 59 157333371 157334801 TTGTAGATCACCCATCTGCC 60 NA Rattus norvegicus 81 Slc2a4 ENSRNOG00000017226 ENSRNOT00000023256 1 1 1 80 10 56555849 56555973 GCCCGAAAGAGTCTAAAGC 59 56555787 56555807 CTTCCGTTTCTCATCCTTCAG 59 NA Rattus norvegicus 81 Nxnl2 ENSRNOG00000014538 ENSRNOT00000019489 1 1 1 85 17 14058393 14058411 GAGATGCTGGACTTCATGC 59 14054470 14058344 CTCTTCTTCAGCTCATGCC 58 NA Rattus norvegicus 81 Mcur1 ENSRNOG00000017988 ENSRNOT00000024206 3 1 1 80 17 24173779 24173800 CATTGGTCAAGATTACGGAGAC 59 24173192 24173740 GAAGAGTGATTTCCTGTTGCA 59 NA Rattus norvegicus 81 Pik3r3 ENSRNOG00000000145 ENSRNOT00000000157 3 1 1 80 5 135105421 135105440 GGAATGAAGGACTGTTTCGT 58 135105480 135108494 TTTGTCATTTACCTCTTCCCTG 58 NA Rattus norvegicus 81 Vom2r33 ENSRNOG00000047703 ENSRNOT00000073461 1 1 1 80 1 65944367 65944390 CTTCAGGGAACATAATGATGATCC 60 65944429 65949277 AGGTGGGCACAGTTATCTC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 3 2 2 80 7 70335243 70335864 CTACATGAACTGCAGGTGC 59 70335907 70335926 ATAAACTGTGCGAAGTGTCC 59 NA Rattus norvegicus 81 Jakmip1 ENSRNOG00000004998 ENSRNOT00000006771 1 1 1 80 14 78443258 78443278 GCAGGAGATAGAGTTCCTGAG 60 78441788 78443216 AGGCGTTCTCTTTCCAGAG 59 NA Rattus norvegicus 81 Prps1l1 ENSRNOG00000032513 ENSRNOT00000052356 2 1 1 60 6 54418073 54418094 CTTATCCCAGAAGATTACCGAG 58 54418113 54418133 TTTCTTAGTTACCACCTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd3 ENSRNOG00000009722 ENSRNOT00000057058 3 1 1 80 10 55953021 55953486 GAGGAAGACAAGATTGAGGAG 58 55952961 55952980 TAGCTTCTCCCAGTAGTCAG 58 NA Rattus norvegicus 81 Rps8 ENSRNOG00000054626 ENSRNOT00000081747 3 1 1 82 5 136022506 136023006 AACACTAAGATTGGCCCTC 57 136022442 136022460 ACATCCAATCTCAGAGCAC 57 NA Rattus norvegicus 81 LOC689600 ENSRNOG00000057651 ENSRNOT00000084905 3 1 1 97 X 153456678 153456849 AGGTCAAGGTAACTAAGAAACC 58 153456602 153456621 CTTAACCAAGGGTGTCTGAG 58 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154,ENSRNOT00000056493 2 2 2 91 4 145453895 145453913 CATGGAGGACAAGATTCCC 58 145453634 145453840 ATTGAGGCTATTGCTGGTC 58 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683,ENSRNOT00000065058 3 2 2 81 9 100940482 100942888 AGACCTACGAGATGGTGGA 59 100942933 100942951 ATCCTGTCCTTCAGGTCTG 58 NA Rattus norvegicus 81 Zfp14 ENSRNOG00000047379 ENSRNOT00000075435 3 1 1 84 19 14490114 14493854 TATCTCACTGGATCTGGAGTC 58 14493896 14493918 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Nutm2f ENSRNOG00000027311 ENSRNOT00000044543 2 1 1 80 17 15024904 15025334 GGTTAAGGAACCAGAATGTACC 59 15024845 15024863 TGCTGGTGTCTGAACTCTG 60 NA Rattus norvegicus 81 Edem3 ENSRNOG00000028358 ENSRNOT00000017858 1 1 1 80 13 69135799 69139567 GAAGCTTGGAAATCAAGTCCT 59 69148685 69148703 AGTTCATCAGCTGGGTAGG 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 2 2 3 82 17 30621240 30621258 GGTAACGTCTGAAGATGGC 58 30621299 30623066 CCTTATACATCTGGAAGCTTATGG 59 NA Rattus norvegicus 81 Lipi ENSRNOG00000033441 ENSRNOT00000045835 2 1 1 80 11 13960856 13971271 ACACATCCAGAAAGACCAC 57 13960794 13960816 CTCATCTGGTTGAAGATCTATCC 58 NA Rattus norvegicus 81 Olr1453 ENSRNOG00000029615 ENSRNOT00000040655 2 1 1 60 11 55474847 55474866 GTGGACTTCATTCTTCTCGG 58 55474888 55474907 AAGAAAGCAGGAACAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp146 ENSRNOG00000006796 ENSRNOT00000008889 2 1 1 60 10 74769205 74769225 GCGGCAAATCAAATCTTACTG 59 74769165 74769185 CACTTAAAGGGTTTCTCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir99a ENSRNOG00000035524 ENSRNOT00000053647 2 1 1 60 11 16052158 16052177 TGGCATAAACCCGTAGATCC 60 16052199 16052218 CCATAGAAACGAGCTTGTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgxb4 ENSRNOG00000013878 ENSRNOT00000067519 1 1 1 80 19 14358268 14359056 CTATGGAGACATTTCGACTTTGG 60 14359096 14359114 TCCATTGCTGTGTCAGGAG 60 NA Rattus norvegicus 81 Zfp329 ENSRNOG00000019376 ENSRNOT00000026204 3 1 1 142 1 65781554 65791837 CAACCTGTATATGGAACATGAGAC 59 65791938 65791956 CTCACAGTCCCAATTGTCG 59 NA InUTR Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 2 2 2 80 13 56929304 56929323 CAGCAAATGGAGAAAGATCG 57 56928098 56929264 CACAAGACTTAATGCAAGAAGG 58 NA Rattus norvegicus 81 Sod2 ENSRNOG00000019048 ENSRNOT00000025794 1 1 1 80 1 47916938 47919391 GAACCCAAAGGAGAGTTGC 59 47916876 47916894 CACAGCTGTCAGTTTCTCC 59 NA Rattus norvegicus 81 Krtap14 ENSRNOG00000001567 ENSRNOT00000002132 3 1 1 60 11 28777190 28777208 AGGATTTGGATCCCATGGT 58 28777148 28777166 TAGGGAGGAGAAAGTACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Creb3l2 ENSRNOG00000012826 ENSRNOT00000017338 1 1 1 80 4 64916665 64981093 TACCACACGCACTTCTCAG 60 64916603 64916623 TGAGAGGAAAGGGTCATTCAG 60 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 1 1 1 60 9 18334669 18334688 GAACTATGGATTCGGCTCAG 58 18331277 18334648 TTGGAGAAACTTAACTGTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_1_1141.1 ENSRNOG00000014898 ENSRNOT00000020006 2 1 1 60 1 113024044 113024064 ATATCTTGAAGGACATGCTGG 58 113024084 113024104 AGTTTCATCTCTGAGTACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nphs2 ENSRNOG00000004030 ENSRNOT00000005425 1 1 1 80 13 73929461 73931399 CCAGAGGAAGGGATCAAGC 60 73931440 73931461 TACGATGATGAAGATCAGGGAG 59 NA Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 1 2 2 80 13 73441427 73441448 CAAGAAGTAAAGCAGAGTACCT 58 73437570 73441386 ACAGGTCCAGAGTTACCTC 58 NA Rattus norvegicus 81 Sun2 ENSRNOG00000015177 ENSRNOT00000046399 1 1 1 80 7 120961357 120962352 CTTCGTCCTAACCAGGTCC 60 120961295 120961313 GTCAGGAGTAGCAAGAGCA 59 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 1 2 2 80 5 153855812 153857453 ACAGAGTACAGAAAGGTTTCAC 58 153857494 153857512 CTGGGATTACTGACCTCCT 58 NA Rattus norvegicus 81 Psmd9 ENSRNOG00000001339 ENSRNOT00000057716 3 1 1 92 12 38787371 38787389 GAATGTCATGGTGATCCGC 59 38786755 38787316 GTAATATTGCAGCCCAGCAG 60 NA Rattus norvegicus 81 Cbx6 ENSRNOG00000046955 ENSRNOT00000068033 3 1 1 82 7 121053103 121057339 TTTCCTCCTAAAGCCAAGC 58 121053039 121053057 GGATGTCTTTCTTGAGCCG 59 NA Rattus norvegicus 81 Mir301b ENSRNOG00000040402 ENSRNOT00000062155 1 1 1 60 11 88129438 88129457 CTGACTAGGTTGCACTACTG 58 88129478 88129498 CCAGATGCTTTGACAATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Orc4 ENSRNOG00000005021 ENSRNOT00000006937 1 1 1 80 3 33058967 33058986 ATCATGCCTTGAAAGAGCTC 58 33058533 33058927 TCTGTAGCAGTCCATTTAAGTG 58 NA Rattus norvegicus 81 Helb ENSRNOG00000004189 ENSRNOT00000038147 1 1 1 80 7 64871305 64871324 AACTTTGCTTCAAGGGAAGG 59 64870567 64871264 CAGTCTTGCCTTCTAAATGCA 59 NA Rattus norvegicus 81 Pum1 ENSRNOG00000011709 ENSRNOT00000015831 3 1 1 80 5 148891688 148891708 TACCCTAATTTACAACTGCGG 58 148891747 148892818 CTGAATGAATCTAGAACCATGC 57 NA Rattus norvegicus 81 LOC690000 ENSRNOG00000014966 ENSRNOT00000020079 2 1 1 67 1 94579229 94579247 CCCACCAGGATTAGCTGTC 60 94585003 94585021 ACTGTCCACTTGTCATCCA 59 NA DesignNoJunction Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000076039 2 1 2 80 1 166670094 166670487 ATGAACTTTGAGGAGGTGAC 58 166670033 166670053 CTCATACTGGTCATCAAATGC 57 NA Rattus norvegicus 81 Dsn1 ENSRNOG00000006236 ENSRNOT00000008254 2 1 1 80 3 153112965 153113298 AAATCAGAAGACCAGGGACC 60 153112904 153112922 CAATGCTTCCAAAGGCTCG 60 NA Rattus norvegicus 81 Vom2r68 ENSRNOG00000033073 ENSRNOT00000044004 3 1 1 80 14 1111234 1112425 AATGACACAGCAGATATGGAG 58 1112465 1112485 TTGGATACAGTAGGTTTGCTC 58 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 3 2 2 80 11 17079705 17079723 AAACAGAAGAGACGAGCTC 57 17078663 17079661 TCGAATTCAGCTCTTCTCG 57 NA Rattus norvegicus 81 Slit3 ENSRNOG00000007377 ENSRNOT00000009714 2 1 1 80 10 20440935 20441937 CTGAAGACACTGATGTTAAGGA 58 20441978 20441996 CAGTCTCACAGAGCTTAGG 57 NA Rattus norvegicus 81 Olr1072 ENSRNOG00000008460 ENSRNOT00000011176 1 1 1 60 7 9630162 9630180 CAGTGTACGCATGTCAAGG 59 9630120 9630138 GCCACAGAGATAGGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160,ENSRNOT00000068444 1 2 2 81 3 79860549 79861114 GAGATGCTGAAGTTTGCCG 60 79861159 79861177 TCAGGTAGCTTTCGAGCAG 60 NA Rattus norvegicus 81 Wdr82 ENSRNOG00000048441 ENSRNOT00000074771 1 1 1 80 8 114880716 114881722 TATGATTGGTTCAGAAGATGGC 59 114881763 114881781 TGCTTCCCATCCAGTACAG 59 NA Rattus norvegicus 81 Cspp1 ENSRNOG00000021718 ENSRNOT00000008480 3 1 1 80 5 8809779 8810524 CCAATATTGTGTACTATGGTTCAGG 60 8809723 8809742 CTACTTGGTGAGTGACAGGG 60 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611 3 1 3 84 1 65906615 66133494 CCCAGATCAGTTATTCATCTTCC 59 66133538 66133556 AGATCACTAGGCAGTGTCC 59 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 3 2 2 85 4 169147340 169175824 TGGATACTCCAGAATTCTCTACTC 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 3 2 2 80 7 133457356 133457377 TGCTAATCTCCTTAACATCCTG 58 133460970 133469107 CTTTATCCTCCTCAGAAACTCC 58 NA Rattus norvegicus 81 Phf7 ENSRNOG00000018996 ENSRNOT00000044991 2 1 1 80 16 7326116 7326135 CAAGTGTCGAGAACATCAGG 59 7325528 7326073 ACGTGTGGGCATATTTCTG 58 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 1 1 1 117 1 215704053 215705032 CATGGAGATGACCAGGGTG 60 215705912 215705931 ATTCTTATGGTCCCTCCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 3 1 1 119 1 215704053 215705032 CATGGAGATGACCAGGGTG 60 215705913 215705933 ACATTCTTATGGTCCCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Fbxo33 ENSRNOG00000005285 ENSRNOT00000059316 2 1 1 80 6 80308594 80333923 GGAACAACAGGAACCTCCA 60 80308532 80308550 ATGTGCTGGACAGACTTCC 60 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774,ENSRNOT00000079917 3 2 2 80 5 7830581 7832953 TCCTGGGAAGTGAATTTGTC 58 7830520 7830538 CTTGTCCCAAGTGAACACC 59 NA Rattus norvegicus 81 Spock3 ENSRNOG00000029903 ENSRNOT00000059750 1 1 1 80 16 28715809 28715827 AATGGCTCACCACAGTCTC 60 28638387 28715768 AAGTGCGGAAATAATCATCGTC 60 NA Rattus norvegicus 81 Spock3 ENSRNOG00000029903 ENSRNOT00000059750 2 1 1 80 16 28524134 28524152 GTGCCCTATAGCCTATGCC 60 28488511 28524094 GCCTGATATTCTAGTTTGCACTG 60 NA Rattus norvegicus 81 Fgf4 ENSRNOG00000020890 ENSRNOT00000028355 3 1 1 180 1 218026050 218026068 AGACTCTACTGCAACGTGG 60 218026633 218027056 CGGTAAAGAAAGGCACACC 59 NA Rattus norvegicus 81 Slc16a13 ENSRNOG00000018785 ENSRNOT00000025403 3 1 1 81 10 56828121 56828909 CTCTATCAGGCTACCTCCG 59 56828058 56828076 CTTCCTGCAAGTAGGAAGG 58 NA Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000055290 2 1 2 187 7 144778334 144778485 TCCATACCAGGTCACAACG 59 144778165 144778184 TTGTAGATGACACCCACAGG 60 NA InUTR Rattus norvegicus 81 Map4k5 ENSRNOG00000004923 ENSRNOT00000006705 1 1 1 80 6 92141288 92141306 CTTCAAGACAGCGTGTTGG 60 92139644 92141245 AATTTCCTGGGTAACCTCGT 59 NA Rattus norvegicus 81 Map4k5 ENSRNOG00000004923 ENSRNOT00000006705 2 1 1 80 6 92177624 92178528 AAAGGCTTCTGACTCACAC 58 92177562 92177580 TGTTCACCTTGTCCAACAG 58 NA Rattus norvegicus 81 Rmnd5b ENSRNOG00000047396 ENSRNOT00000075555 1 1 1 80 10 34980523 34980542 CCTATCAAGCTCATCTGTGG 58 34980383 34980480 GGGACACTTTAGCTTTCCT 57 NA Rattus norvegicus 81 LOC100362583 ENSRNOG00000030442 ENSRNOT00000045933 3 1 1 81 17 24610660 24610680 GCTCATGAGGTATGGACGT 59 24610597 24610615 TCCGGTAGTGGATCTTTGC 60 NA Rattus norvegicus 81 Stx6 ENSRNOG00000003402 ENSRNOT00000035145 3 1 1 83 13 72840201 72849155 TCACATGACCAGTGATCGG 60 72849202 72849220 ACTAGGAAGAGGGTCAGCA 60 NA Rattus norvegicus 81 AABR07027342.1 ENSRNOG00000024499 ENSRNOT00000072904 2 1 1 80 17 25424333 25437791 TCATTGAGGTGTTTGGTGAC 59 25437832 25437852 CTCGTATGTGCTTCTCAACAG 59 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649,ENSRNOT00000080090 1 2 2 116 6 147930252 147933710 TCAGGACTTGTCATGATCCTC 59 147933788 147933806 CAGTGGGTACAGGGATGAG 59 NA Rattus norvegicus 81 RGD1563045 ENSRNOG00000029130 ENSRNOT00000047511 1 1 1 60 7 79139647 79139665 CCTGGGTCCTAAGTCTGTG 59 79139688 79139707 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 2 3 3 81 8 90629317 90630521 CTGCTAAGAAAGAACCCGGA 60 90629255 90629273 CCTTCCTTTCCAGCTTCCT 59 NA Rattus norvegicus 81 AABR07065778.2 ENSRNOG00000047308 ENSRNOT00000074472 2 1 1 60 6 141008185 141008203 CAAGAACACCCTGTACCTG 58 141008143 141008163 GAAATAAGTGGCAGTGTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmp5 ENSRNOG00000010917 ENSRNOT00000014846 1 1 1 80 8 82943405 82947806 CATAGTCCAGACTCTGGTACAC 60 82947844 82947865 ATGGCATTTAGTTTGGTTGGAG 60 NA Rattus norvegicus 81 Gfod1 ENSRNOG00000014007 ENSRNOT00000018739 3 1 1 84 17 23923487 23923505 AGGATGTGGACTTGGTGTG 60 23824733 23923439 ACATTCTTGCCTATGCCCA 59 NA Rattus norvegicus 81 Prss56 ENSRNOG00000029865 ENSRNOT00000065805 3 1 1 95 9 94280988 94281006 TGTGGACTGTGATGCTAGC 60 94281065 94281169 TCTGCGGGTCAAACTTAGG 60 NA Rattus norvegicus 81 Olr1398 ENSRNOG00000045940 ENSRNOT00000041540 2 1 1 60 10 34744191 34744212 ATCATCACAGTCTCACAAATGG 59 34744230 34744251 TGTTAAGGAAGAAGTACATCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde1b ENSRNOG00000036828 ENSRNOT00000055272 2 1 1 80 7 145141704 145141723 GTTAGCCACAGACATGTCCT 60 145141764 145142710 TTGTCAATCCTTTCAAGCTGC 60 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758,ENSRNOT00000056430 3 2 2 80 9 111855477 111855497 GGAGTGTATTCATCTTCTGGC 59 111855535 111859810 GCTGTATCTCCCATAATTCAGTG 59 NA Rattus norvegicus 81 RGD1559629 ENSRNOG00000031317 ENSRNOT00000049500 1 1 1 60 6 69950601 69950621 CCCATCTAAGACGTCTTTCTG 58 69950641 69950661 CTGAAATTCTTGTCTGGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501038 ENSRNOG00000033654 ENSRNOT00000045455 2 1 1 80 8 103350428 103351605 ATTTCCAGGTCTTGATCCTC 57 103351646 103351666 GATAAACATCCACACGATGTC 57 NA Rattus norvegicus 81 LOC691485 ENSRNOG00000013097 ENSRNOT00000017504 1 1 1 128 6 137068577 137068595 TAGATGAGGTCTGCAGCTC 59 137068687 137070505 CTTCCTGTCGTCATCCCTC 60 NA InUTR Rattus norvegicus 81 Soat1 ENSRNOG00000004111 ENSRNOT00000005677 2 1 1 80 13 74036090 74036549 CTTCATGTTCTTTGGAATGGCT 60 74036031 74036049 GCCCAAACCATGATGTTCC 60 NA Rattus norvegicus 81 Lrrc34 ENSRNOG00000027935 ENSRNOT00000031730 1 1 1 80 2 116384731 116387357 TGTACGGAGAACAGGAAGAG 59 116387397 116387418 ACATATGCAGTTCAACAAGGAC 59 NA Rattus norvegicus 81 Slc10a3 ENSRNOG00000060580 ENSRNOT00000082124 1 1 1 144 X 156336480 156336998 GGAAGCAGTTACCTTACTTTGG 59 156338536 156338554 AATGTCCTGAGAAGGGTCC 59 NA InUTR Rattus norvegicus 81 Zbtb12 ENSRNOG00000000418 ENSRNOT00000000476 2 1 1 60 20 4573340 4573358 GAAGCTGGAGTTTCCTCTG 58 4573382 4573400 ATCCTCATCCTCCTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybpc3 ENSRNOG00000012307 ENSRNOT00000016652 3 1 1 80 3 79947295 79947637 ATTGTGCAAGAGAAGAAGCTG 59 79947679 79947697 CTTAAACACAGCCTGGTCC 59 NA Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000082383,ENSRNOT00000012880 1 2 2 110 X 15611734 15611752 TGAACGACCTCAGTTGGTC 60 15611826 15612194 TCAAGAGCCAGTTCCTCAG 59 NA Rattus norvegicus 81 Prss37 ENSRNOG00000012201 ENSRNOT00000016251 3 1 1 80 4 68347600 68348818 ACCATCCTAGCTGGAACAG 59 68347538 68347560 CTTGAGGTATGCTAAGTAAGGAG 58 NA Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000002927 2 1 2 60 14 6791772 6791790 TGTCTGTTGGACTGTTCCT 59 6783538 6791750 CCATCTTCATTCAGCTTTGGT 59 NA DesignRelaxed Rattus norvegicus 81 Sell ENSRNOG00000002776 ENSRNOT00000003733 2 1 1 81 13 82370753 82370771 TGGAGATGTCAGAGTGCTC 59 82370816 82372884 GCAGGAGATCACAACACAG 59 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336 1 1 2 80 8 57886215 57886233 AGAAGCCAGGAAGATCCTC 59 57886276 57921377 TGAAGTTTGCTGATCCTGTC 58 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 3 1 1 97 5 38922698 38922740 AAATTTGGGCAGGTTCAGTC 59 38922620 38922638 TTCAATCAGAGCCACTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Tmem102 ENSRNOG00000015057 ENSRNOT00000020578 1 1 1 85 10 56412387 56412405 GGAGAGTTGGAGTGAAGGG 59 56412219 56412340 GGTGAACTAGACCGAGTAGAG 59 NA Rattus norvegicus 81 RGD1560291 ENSRNOG00000009241 ENSRNOT00000029672 3 1 1 80 7 17515839 17515862 CAACTTGGACAAAGGGATATACTC 59 17505975 17515803 TTGTCCAACACTAAGTTCTCCA 60 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000083401 1 2 3 80 12 37390142 37390160 GAGCTGGTGGAGTATACCC 59 37388739 37390100 TTCGTAAGTTGGCTCAAACTC 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 3 2 2 90 16 81204890 81205783 CAAGGACATGGTCCCTCTG 60 81205836 81205855 GTAGGCTAGGATCTGCTGTG 60 NA Rattus norvegicus 81 Proser1 ENSRNOG00000010980 ENSRNOT00000014614 2 1 1 80 2 142699992 142700013 ATTAGCCAATGTGATAGCTCCA 60 142700054 142700327 AGGTCTTCGTTGTCTGCTC 60 NA Rattus norvegicus 81 Sap30 ENSRNOG00000013218 ENSRNOT00000017652 3 1 1 80 16 36118403 36118421 AAGGAAGAGGAAAGGGAGC 59 36118463 36118830 TGGTACAAATCAACCTCTGGA 59 NA Rattus norvegicus 81 Lrpap1 ENSRNOG00000009313 ENSRNOT00000012665 3 1 1 80 14 80920476 80920495 CCGAGTGATAGATCTGTGGG 60 80920538 80921516 TTAAGCTCCTCCCTGAACG 59 NA Rattus norvegicus 81 Spt1 ENSRNOG00000036825 ENSRNOT00000055268 2 1 1 80 7 145336493 145337301 ACTTCTGATACTGCTGATGGA 59 145336433 145336451 AGAGGACTCAGCATCTTGC 60 NA Rattus norvegicus 81 Trpc2 ENSRNOG00000020188 ENSRNOT00000048172,ENSRNOT00000045726 2 2 2 80 1 167186491 167186509 CCAGCTCACGAATCATTGG 59 167186552 167186982 GAGGATGAACATGAACCGGA 60 NA Rattus norvegicus 81 AABR07062268.1 ENSRNOG00000027431 ENSRNOT00000038077 3 1 1 81 4 166617034 166617053 AAGTGTAAATTCGAGAGGCA 57 166615817 166616990 TGAGATCCAGCCTGTAGTC 58 NA Rattus norvegicus 81 Hoxc5 ENSRNOG00000016598 ENSRNOT00000022247 2 1 1 85 7 144628624 144628642 TGACCAAACTGCACATGAG 58 144629380 144629398 TTTCTCGAGTTCCAGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Stac ENSRNOG00000008865 ENSRNOT00000011780 3 1 1 80 8 119844273 119848313 ACCATAAACCACCAGGGAC 59 119844211 119844234 CTGTGGTATAAATCTGTACAAGGC 60 NA Rattus norvegicus 81 Mir3586 ENSRNOG00000035457 ENSRNOT00000053580 2 1 1 60 7 114485555 114485574 GAGTATGACGATCCCTGTCC 60 114485595 114485615 AGTCTAGTATGTCTCCTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm7 ENSRNOG00000057806 ENSRNOT00000077398 1 1 1 80 3 119288440 119288459 ACCTTCAGTTCAAGAGTGGA 59 119286293 119288399 TCAGACATAAAGACCTCACGA 59 NA Rattus norvegicus 81 Zfp110 ENSRNOG00000031328 ENSRNOT00000026298 3 1 1 82 1 65747382 65754760 TTCTTCCAGAATGTTCTGGG 58 65747319 65747338 AACCTTGATCTTCATCAGGG 57 NA Rattus norvegicus 81 Acvr2b ENSRNOG00000014477 ENSRNOT00000019777 3 1 1 84 8 128112982 128113306 CAATTGCTACGACAGGCAG 59 128113353 128113372 GTTGCAGAAATTGCCTTCAC 59 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000009513 1 1 2 85 6 105395475 105395494 TGGCCTTCTATCATCTTGGG 59 105395542 105398065 CACATTGGTGTCTGAGGGT 60 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151,ENSRNOT00000051612 2 2 2 80 8 91397075 91397232 CCTCTATGACTATGAAATCACGG 59 91397271 91397290 TTAAGCCAACTGTTCAGGTC 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410 1 2 6 94 20 4612466 4613894 TCTGGCATTCAGAAACAGC 59 4613952 4613970 CTGAGGAGACAGAAGACCC 59 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000087470 1 1 6 95 20 4611864 4613893 TCCACAGACCAGGAAACAG 59 4613952 4613970 CTGAGGAGACAGAAGACCC 59 NA Rattus norvegicus 81 rno-mir-3543-1 ENSRNOG00000050253 ENSRNOT00000062188 1 1 1 60 6 133716258 133716276 CAAACCATGAGTCGAGCTG 59 133716216 133716235 GACTCCAGGTTTGAAACGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef28 ENSRNOG00000016544 ENSRNOT00000065143 2 1 1 80 2 25770386 25771482 GGAGCAAAGAGGTAACGGA 59 25770324 25770342 GTGTGAAGGCGTCATTGAG 59 NA Rattus norvegicus 81 rno-mir-3542-1 ENSRNOG00000050396 ENSRNOT00000074009 2 1 1 68 17 9370881 9370899 ACTATGGTAGGGAGAGTGG 57 9370931 9370949 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufc1 ENSRNOG00000038218 ENSRNOT00000058190 3 1 1 81 2 140463788 140463807 TCAATGCCAAACCTAACTGG 59 140463032 140463747 TGTTGGTGGATGAGATAAATCC 58 NA Rattus norvegicus 81 Dmp1 ENSRNOG00000002167 ENSRNOT00000061224 1 1 1 80 14 6896255 6896276 AATACTGAATCTGAAAGCTCCG 59 6892314 6894169 GTGGTCACTATTTGCCATGG 59 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858,ENSRNOT00000074723 2 2 2 103 2 113606043 113606952 GAGACACTTGTGGGAAGCT 60 113605958 113605976 AATATGGACCAAGGAGGGC 59 NA Rattus norvegicus 81 Rn60_1_1739.1 ENSRNOG00000051318 ENSRNOT00000076911 2 1 1 60 1 167655282 167655300 AAGGAGTAAGACCCTGGAC 58 167655321 167655342 AAGGTCTCTTTCTTGTTCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Da ENSRNOG00000032844 ENSRNOT00000081202 2 1 1 60 20 4129403 4129423 TTCCGCAAATTCCACTATCTG 59 4129363 4129385 CCTCACAGTCATAGTAATCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 3 1 2 127 16 85305322 85305427 GAGTCAAACTCCCAACACC 58 85280718 85280736 AAAGCTGAGAAGCCATGGA 59 NA Rattus norvegicus 81 Hoxc12 ENSRNOG00000016116 ENSRNOT00000021580 1 1 1 99 7 144548504 144548522 TATCTCCGTTGAACCCAGG 59 144549341 144549359 AACTTCGAATACGGCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1515 ENSRNOG00000048395 ENSRNOT00000043358 2 1 1 60 10 62428267 62428287 TGCTTTGGGACAGTAATAAGG 58 62428307 62428327 CCACTGAGTTAGAGGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1060 ENSRNOG00000031181 ENSRNOT00000051063 2 1 1 60 7 9173476 9173494 CCCTTTGCTAAACCCTCTC 58 9173434 9173452 TTTGAAAGCGTCCTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog6 ENSRNOG00000013660 ENSRNOT00000018385 1 1 1 80 2 142209939 142209959 TGTACATGATGAAGACGACAC 58 142207377 142209897 GGGCTTCGATCTGAAACTG 59 NA Rattus norvegicus 81 Il17a ENSRNOG00000012467 ENSRNOT00000016664 1 1 1 80 9 26841371 26842474 AATTCCATCCATGTGCCTG 58 26842518 26842536 CTTTGAGGGATGAGTACCG 57 NA Rattus norvegicus 81 Hddc2 ENSRNOG00000021442 ENSRNOT00000029444 3 1 1 80 1 28583632 28592996 AACTCTGGGAAGAGTATGAGAC 59 28583573 28583594 GAAGGATCATTTCACACTGGTC 59 NA Rattus norvegicus 81 Dusp9 ENSRNOG00000055185 ENSRNOT00000087962 3 1 1 90 X 157169925 157169944 TTCCACTACAAGCAGATCCC 60 157169586 157169873 AGGCCTCATCTATGAATGCA 59 NA Rattus norvegicus 81 Il9 ENSRNOG00000012131 ENSRNOT00000016187 2 1 1 98 17 8558883 8558902 CTTTGCTCTTTGGGTCTGTC 59 8558963 8559070 ATGATGGGTCGTCCTTCAG 59 NA Rattus norvegicus 81 LOC689031 ENSRNOG00000047990 ENSRNOT00000070960 3 1 1 60 2 45620436 45620454 TCAACAGAGAAACAGCAGG 58 45620476 45620496 ATCGTAATCATCAGTGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpn3 ENSRNOG00000001278 ENSRNOT00000001722 3 1 1 80 12 39674644 39674662 TTGACTGGCTGGAGAACTG 60 39673270 39674602 TGTAGAGCTCAATCTGACCTG 59 NA Rattus norvegicus 81 LOC100361830 ENSRNOG00000013046 ENSRNOT00000017592 2 1 1 80 9 27129523 27129541 ATGAATCTGGACAGCTGGT 59 27123610 27129480 ATAAATAGCCTTCCGTTGCC 59 NA Rattus norvegicus 81 AABR07072539.1 ENSRNOG00000031716 ENSRNOT00000043852 3 1 1 80 17 15534931 15535904 TAAGATACGGAACATCCTTCCT 59 15534872 15534893 TCAAGATGAAGGTGTTCAAGAG 58 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 2 3 3 123 5 2051972 2054772 ACACAATGGATGGAGAGGA 58 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 3 2 2 80 10 25906506 25906610 TTTCTAAGGCAAAGCCTTCTG 59 25906446 25906469 CTGTTAACTCCACATACTTCAGTG 60 NA Rattus norvegicus 81 Hunk ENSRNOG00000002092 ENSRNOT00000002866 3 1 1 80 11 30639196 30642699 CCCTAACAGGATTTCTCTGGA 59 30642741 30642759 TCACTGTTCTTGTAGCCCA 59 NA Rattus norvegicus 81 Ptdss1 ENSRNOG00000052289 ENSRNOT00000087143 2 1 1 82 7 71316339 71316357 TCGAGCAGGTTAAATCCCT 58 71316402 71319152 GGCATACTCCATGATGTCTG 58 NA Rattus norvegicus 81 Tm4sf5 ENSRNOG00000019510 ENSRNOT00000026437 2 1 1 89 10 57117473 57117706 CTTCCAAGAAACCCAAGGC 59 57117759 57117777 GTCACATTCCAGGGTACCA 59 NA Rattus norvegicus 81 Tm4sf5 ENSRNOG00000019510 ENSRNOT00000026437 3 1 1 96 10 57117473 57117706 CTTCCAAGAAACCCAAGGC 59 57117766 57117784 GAAGAGCGTCACATTCCAG 59 NA Rattus norvegicus 81 Ghrl ENSRNOG00000010349 ENSRNOT00000014103 2 1 1 83 4 145677977 145677995 ATGCTCTGGATGGACATGG 60 145677338 145677932 CTTGGATTCCTTTCTCTGCTG 59 NA Rattus norvegicus 81 C1qtnf6 ENSRNOG00000007300 ENSRNOT00000009551 1 1 1 95 7 119748143 119749936 CCTGAAAGGTGACAAAGGG 58 119748066 119748084 TTGATACCCTGAGAGCCAC 59 NA Rattus norvegicus 81 Nppc ENSRNOG00000018854 ENSRNOT00000025582 2 1 1 133 9 93734807 93734825 AACAAGAAGGGCTTGTCCA 60 93731903 93731921 CAAGGATGACCTCAGTGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gabpa ENSRNOG00000053205 ENSRNOT00000086946 2 1 1 80 11 24298016 24300025 CACAGAAGAAAGCATTGTGGA 59 24300061 24300085 CCTATTGGTTCATTGATGTCTATGG 60 NA Rattus norvegicus 81 Mip ENSRNOG00000003132 ENSRNOT00000004223 1 1 1 80 7 2637077 2637621 CCTCTTTGGGATGTATTACACTG 59 2637661 2637679 CTGAAGTTCCTGGTGAGGA 59 NA Rattus norvegicus 81 Nxn ENSRNOG00000008178 ENSRNOT00000050232 1 1 1 80 10 64427823 64427843 AATCCTACCGGAAGATCAAGG 59 64426074 64427782 TGAAAGACTCCTCTGACCTG 59 NA Rattus norvegicus 81 Mrpl39 ENSRNOG00000047563 ENSRNOT00000074032 3 1 1 80 11 24191690 24191905 AGATGATAGGTTGGCATCAC 58 24190690 24190709 GCCAATCGAACATTAAAGGC 58 NA Rattus norvegicus 81 Adsl ENSRNOG00000018655 ENSRNOT00000025193 3 1 1 80 7 122176575 122176595 TGCTATGTTGGAGACAATACG 58 122178843 122179376 GATCACTCTAGCAAGCTTTGG 59 NA Rattus norvegicus 81 AC106438.1 ENSRNOG00000059517 ENSRNOT00000084409 3 1 1 123 7 13466502 13466523 GTCATGTACACTGTAGTTACCC 58 13466397 13466417 GAAGTAGGGAAGGTGGACTC 59 NA Rattus norvegicus 81 Ly75 ENSRNOG00000007012 ENSRNOT00000010683 2 1 1 80 3 46381702 46381721 GGAAGCTCTTTCTGGAAGAC 58 46380004 46381660 ATTCGCTTCCATCATGACTC 58 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034,ENSRNOT00000018552 2 2 2 80 9 27590930 27590948 GAAAGGATGCCAGTGTGAC 59 27570036 27590887 TTCATGATTCTGATGGCTCG 58 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386,ENSRNOT00000067384 1 2 2 80 1 239468633 239468651 AAGCGGATGTTCCTTTCTG 58 239468695 239471878 GAGAACGATTGACCTTGGA 57 NA Rattus norvegicus 81 LOC100363408 ENSRNOG00000047988 ENSRNOT00000073652 3 1 1 88 1 198120568 198120587 CTAAGTTCGAGGGAAAGCCA 60 198120893 198120911 CTCAAAGGCATGGATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Nipsnap3a ENSRNOG00000039113 ENSRNOT00000059828 2 1 1 80 5 69817376 69817394 ATGCCCATGCTAATCAAGG 58 69817437 69819881 GAACATGAACTCTGTTGAGC 57 NA Rattus norvegicus 81 Ppp2r1b ENSRNOG00000010922 ENSRNOT00000064290 1 1 1 80 8 55298079 55298480 CATTCTAGACACCAACGCC 59 55298522 55298542 TTGACATCCATGTCTTCATCC 58 NA Rattus norvegicus 81 Clec4a2 ENSRNOG00000030012 ENSRNOT00000051525 1 1 1 80 4 155805167 155861961 CACTCACAGAAGATAAAGCCTG 59 155805108 155805131 CAGTTGAAGTAAAGTAGCAGTAGG 59 NA Rattus norvegicus 81 Clec4a2 ENSRNOG00000030012 ENSRNOT00000051525 2 1 1 80 4 155805169 155861963 TTCACTCACAGAAGATAAAGCC 59 155805110 155805133 GTTGAAGTAAAGTAGCAGTAGGAG 59 NA Rattus norvegicus 81 AC103514.1 ENSRNOG00000048555 ENSRNOT00000074959 3 1 1 60 10 5183864 5183882 GATACCTGTCAGAGGCTGG 59 5183906 5183924 CTCTTCTGGACTGTAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab31 ENSRNOG00000042189 ENSRNOT00000067974 2 1 1 84 9 113386275 113414846 CAGATATTAGGGAGGTGCCC 60 113386210 113386228 TTCTTCGCACTTGTCTCCA 59 NA Rattus norvegicus 81 Sepsecs ENSRNOG00000049244 ENSRNOT00000070892 1 1 1 80 14 60658472 60658491 CTTGGGTAATTGTGGTGTGG 59 60658532 60661281 TGGATGAACCTGTAATGACGA 59 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 3 2 2 81 3 1389548 1389566 TGTTCAAGGAGGAAGCCAG 60 1389609 1389834 CTCCATAATGTTCACTGGCTC 59 NA Rattus norvegicus 81 Atp6v0b ENSRNOG00000019655 ENSRNOT00000026704 1 1 1 80 5 136719929 136719948 TATCTTCTGTGAAGCAGTGG 57 136719744 136719886 GTAGCACTGAAAGGCTCTG 58 NA Rattus norvegicus 81 Cyp4f1 ENSRNOG00000004786 ENSRNOT00000006533 3 1 1 80 7 15183324 15183345 ATGAGTTTCTCAAGTCTAAGGC 58 15182404 15183284 TTCCATCTTCATCCTTGGTC 57 NA Rattus norvegicus 81 Lsm11 ENSRNOG00000005450 ENSRNOT00000007267 1 1 1 80 10 31029597 31029616 GATGAGACCTACCGTAAACC 58 31029147 31029556 CCGATCAAATAGCCTAGTGAG 58 NA Rattus norvegicus 81 Mfsd10 ENSRNOG00000012534 ENSRNOT00000017386 1 1 1 80 14 81365325 81365343 TGGGACTGATGCTCTACTC 58 81365470 81365562 CTGGAGAACCATAGCTGGA 59 NA Rattus norvegicus 81 Ccl9 ENSRNOG00000028548 ENSRNOT00000029184 3 1 1 88 10 70785292 70788136 GATCGTACATGCGACAGAG 58 70784793 70784813 AGTCTGAAGAGTCTTGAAAGC 58 NA Rattus norvegicus 81 Prtg ENSRNOG00000055251 ENSRNOT00000091722 1 1 1 80 8 79576001 79576021 TCATTAACTACACCATCCGCT 59 79576062 79576297 GGGTTTCTGATGTTTGCAGG 60 NA Rattus norvegicus 81 Trio ENSRNOG00000012148 ENSRNOT00000016784 2 1 1 80 2 80649376 80649395 CGTGAGGAAACTGAAGTTGG 59 80648192 80649337 GTGATCCAGTCAAACATCTTCTC 60 NA Rattus norvegicus 81 Ywhab ENSRNOG00000010945 ENSRNOT00000016981 3 1 1 94 3 160393145 160393163 GAGAAGAAGCAGCAGATGG 58 160393220 160395208 TATTTGTCCAACAGCTCCAG 58 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 1 3 3 100 4 149972345 149976983 CTGTGGTGGTTCTTTAAGCT 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prss40 ENSRNOG00000014001 ENSRNOT00000018758 2 1 1 82 9 41066493 41068947 TTCCAAATGTCTCGAAACCC 59 41066430 41066448 TTCCTGCTATACCTGGTGG 59 NA Rattus norvegicus 81 Cars ENSRNOG00000020651 ENSRNOT00000050721 1 1 1 80 1 216788156 216788174 GTTTGAGCAGTATCGGGAG 58 216786969 216788112 ACTGAGAATGGCTTCATGG 58 NA Rattus norvegicus 81 AABR07033579.2 ENSRNOG00000061897 ENSRNOT00000061600 2 1 1 91 11 28945591 28945609 GAAACTACTATGGCGGCAG 58 28960840 28960858 GTAGGAGCCATAGCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217,ENSRNOT00000086660,ENSRNOT00000014207 2 3 3 80 4 147705801 147708193 CTTCATTGCAGAGTTCATGGA 59 147708234 147708253 GCTGAGTTGAAGAAGGTGAG 59 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000017110,ENSRNOT00000091053 2 2 2 60 7 143882986 143883004 GGTCCTCTTTGGCCTAGTG 60 143883028 143883046 ACAGGACTTCTTACGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asmtl ENSRNOG00000028166 ENSRNOT00000036606 2 1 1 134 12 18533989 18534086 ATGTTAACCAGGCTGAACG 58 18534287 18534305 CTTCGAGAATGTCACCAGC 59 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149,ENSRNOT00000055829 3 2 2 80 1 134801815 134803804 ATCACAGTTTAAGGTTGCCA 58 134801754 134801772 TCATCCCAGTCCTTGTGAG 59 NA Rattus norvegicus 81 Stk33 ENSRNOG00000014590 ENSRNOT00000019597 1 1 1 80 1 173873389 173910873 AAGTCAGTAAATCAGCCCAC 58 173873328 173873346 GGATGTTGAGTCTGAAGGG 58 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796,ENSRNOT00000066244 1 2 2 80 7 117666184 117666202 CCTACTCAAGAGCGATTCC 57 117666041 117666143 ACCTTAGACTGATGATGTAGTG 57 NA Rattus norvegicus 81 Lekr1 ENSRNOG00000031247 ENSRNOT00000051494 3 1 1 80 2 157581178 157595859 GAGGGAGAAGATTGAAGCTG 58 157595900 157595920 TTAAAGAGAAGAGCTTGGTCC 58 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482,ENSRNOT00000024445 3 2 2 80 9 94903095 94903113 TGAATTCAAGGGCTCCCTG 60 94903155 94904476 GCTAATAGGTAAGCTCCAGCA 60 NA Rattus norvegicus 81 Timp3 ENSRNOG00000004303 ENSRNOT00000005746 3 1 1 80 7 23548531 23553801 AGCAAATGAAGATGTACCGA 57 23548470 23548488 CACAGAGACTTTCAGAGGC 58 NA Rattus norvegicus 81 Zcrb1 ENSRNOG00000004996 ENSRNOT00000006780 3 1 1 107 7 134595823 134595844 CTAGGAAGAGTAAAGGTGTTGC 59 134595447 134595761 CCTTTATCACTCTACCGAATAACTG 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 2 2 2 82 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493106 14493128 CAAAGATGTGTTGAGATGGATCC 60 NA Rattus norvegicus 81 RGD1565283 ENSRNOG00000002972 ENSRNOT00000003979 1 1 1 116 13 88644675 88644693 TATGTCCTCACTTGCGACC 60 88647606 88647626 CATACGAAGTAGCTGTAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760,ENSRNOT00000011890 2 2 2 80 2 100236052 100236071 GGGAGCACTTACTTCTTGGA 60 100233035 100236012 GAATAACGTAGTGGTTTCCCAG 59 NA Rattus norvegicus 81 LOC100360604 ENSRNOG00000046349 ENSRNOT00000049571 1 1 1 60 9 66626899 66626920 TACATGCGAATCTACAAGAAGG 58 66626860 66626878 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pip ENSRNOG00000016076 ENSRNOT00000021576 2 1 1 85 4 71320887 71320905 TCATTCACATCCACTGCTG 58 71320951 71322852 GGAATAGTTTCATTATCCTGGC 57 NA Rattus norvegicus 81 Pip ENSRNOG00000016076 ENSRNOT00000021576 3 1 1 86 4 71320886 71320904 CTCATTCACATCCACTGCT 58 71320951 71322852 GGAATAGTTTCATTATCCTGGC 57 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 3 2 2 80 10 56289069 56289087 AGTACTCACCCAGAAGCAC 59 56288722 56288890 ATGTCAGAGTCCTTGGAGG 58 NA Rattus norvegicus 81 AABR07033590.1 ENSRNOG00000040050 ENSRNOT00000061592 2 1 1 83 11 29284273 29298099 GGTTCCAGATATGGCTGTG 58 29284208 29284226 ATAGCCAGAGCCATATCCA 58 NA Rattus norvegicus 81 Slc16a4 ENSRNOG00000018131 ENSRNOT00000024455 3 1 1 80 2 210053582 210055709 TTATGACTGGACAGGTGCTC 60 210055752 210055770 ACAGGTCTTAGGAGCATGC 60 NA Rattus norvegicus 81 Eri3 ENSRNOG00000019381 ENSRNOT00000072492 3 1 1 82 5 136437876 136437899 GAGTCTACCTTTCACATGTATGTC 59 136437939 136444203 TGAATGATCCCAGTGAGCTC 60 NA Rattus norvegicus 81 Fam212b ENSRNOG00000015691 ENSRNOT00000021001 3 1 1 83 2 208170868 208182820 CAAACAGGAGCTGATGTCC 59 208182867 208182885 AGTTCTTGAAGTGCACCCA 60 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 3 2 2 90 1 99534190 99537395 ATCAGAGGTGTGGTCAAGG 59 99537448 99537467 ATTACTCTTGATGCGTCCCT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07020443.1 ENSRNOG00000047721 ENSRNOT00000061779 3 1 1 80 13 26465989 26466007 AAGCAAAGCATCTGACAGC 59 26466048 26466374 TCATTTGTAGATTCACCCTGCT 60 NA Rattus norvegicus 81 Cx3cr1 ENSRNOG00000018509 ENSRNOT00000025019 1 1 1 60 8 128741305 128741325 CATTAGGCTCATCCTCTTGGT 60 128741265 128741283 GATGTTGTAAGGCGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim66 ENSRNOG00000014373 ENSRNOT00000019368 1 1 1 80 1 174070712 174071001 AGCATGTCCATTAAGGTCAG 58 174070651 174070669 GACAGTGACCTTTCTTCCC 58 NA Rattus norvegicus 81 Rbp3 ENSRNOG00000051911 ENSRNOT00000090679 1 1 1 80 16 10284441 10284460 GCTGGACAAGATCTACAACC 58 10284502 10285933 CCATATCGTTCACCTGTGAG 58 NA Rattus norvegicus 81 Slco1a1 ENSRNOG00000036984 ENSRNOT00000049154 2 1 1 80 4 176159000 176161692 ACAGTTTCAGGCACATTTACC 59 176158940 176158961 GTATCAGAATGAAGAAGGCAGG 59 NA Rattus norvegicus 81 Atxn1l ENSRNOG00000038766 ENSRNOT00000059225 1 1 1 60 19 41932765 41932786 AGTTTATTGGGTCTCCTTACAG 58 41932805 41932825 GGATTGGGTAGGAAATTAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngp ENSRNOG00000024330 ENSRNOT00000029755 1 1 1 62 8 118662498 118662516 CTAAGTGCCACTCCACCTC 60 118663255 118663273 AATCCTGAACTCGAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000090726 1 1 2 80 16 23972363 23974994 GTACTACAGGGAGCCATGG 59 23972301 23972321 GGCCAAGTCCAACTTATTCAC 60 NA InUTR Rattus norvegicus 81 RGD1565862 ENSRNOG00000015005 ENSRNOT00000042670 2 1 1 81 X 18081609 18081816 GAGAGCTGGTCAGAAGAGG 59 18081546 18081566 CTCATGAGAAATTCTGCAGCC 60 NA Rattus norvegicus 81 Scn10a ENSRNOG00000032473 ENSRNOT00000046864 1 1 1 80 8 128384450 128387754 TCTGTCCATTCCTGGTTCTC 59 128384389 128384407 TGGAAGATCAGTTCGGGTC 59 NA Rattus norvegicus 81 Bad ENSRNOG00000021147 ENSRNOT00000028712 3 1 1 83 1 222198581 222198599 CTTGAGGAAGTCCGATCCC 60 222198646 222199100 AACATACTCTGGGCTGCTG 60 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 2 2 2 86 10 91792311 91792330 GAATGCCAGTTCCAGTTCAG 59 91790872 91792262 TGTCTCCTTGAAGCCTCTC 59 NA Rattus norvegicus 81 Eva1c ENSRNOG00000002072 ENSRNOT00000002838 3 1 1 84 11 31062874 31062892 ATTACCACTTCGGAAGCCC 60 31062937 31066504 GTGAGTATGTTCTTGGGAACAC 59 NA Rattus norvegicus 81 Ptgs1 ENSRNOG00000007415 ENSRNOT00000010218 3 1 1 80 3 15567606 15567626 CCAACGTGAGCTACTATACTC 58 15567668 15570112 GCTTCTTCCCTTTGGTTCC 59 NA Rattus norvegicus 81 Gys2 ENSRNOG00000059753 ENSRNOT00000090122 3 1 1 80 4 176661620 176662203 GAGGTCATTTCTATGGCCAC 59 176661559 176661577 TGGAGAACTCATACCTCCC 58 NA Rattus norvegicus 81 AABR07002905.1 ENSRNOG00000047959 ENSRNOT00000072570 3 1 1 81 1 88689439 88689459 GTGCCACTATTGTGGTAAAGG 59 88688497 88689396 GAATGGCCGTATTCCAGTG 59 NA Rattus norvegicus 81 Gpr161 ENSRNOG00000003073 ENSRNOT00000004104 2 1 1 80 13 83555289 83555308 CTTCTCTGCCCTTCTCTACC 59 83555351 83559928 GCGTAATAGCGATCGATGG 59 NA Rattus norvegicus 81 Ndufa7 ENSRNOG00000006939 ENSRNOT00000009425 1 1 1 100 7 18688601 18688619 TACTGTACTCGTGATGGCC 59 18688683 18696131 ACAGCAGAACTCTCAGCTG 60 NA Rattus norvegicus 81 Ndufa7 ENSRNOG00000006939 ENSRNOT00000009425 2 1 1 101 7 18688601 18688619 TACTGTACTCGTGATGGCC 59 18688684 18696132 CACAGCAGAACTCTCAGCT 60 NA Rattus norvegicus 81 Dennd2d ENSRNOG00000017680 ENSRNOT00000023807 1 1 1 80 2 209103260 209103278 AAGCCATCCCTTTGTTCTG 58 209103321 209103917 CAAATGAGAAGGTCTCCCTG 58 NA Rattus norvegicus 81 Prkcg ENSRNOG00000054371 ENSRNOT00000080032 2 1 1 80 1 64425154 64426269 GATCCATATTACTGTGGGTGAG 58 64425095 64425116 TTCAGTTTCACATAGGGATCAG 58 NA Rattus norvegicus 81 Oat ENSRNOG00000016807 ENSRNOT00000022628 1 1 1 80 1 204564801 204564820 ATCTGATGTTGTGACTGCTG 58 204563159 204564758 CAAGCGTCACAATCTTTGG 58 NA Rattus norvegicus 81 Oat ENSRNOG00000016807 ENSRNOT00000022628 2 1 1 80 1 204564806 204564824 TGCCATCTGATGTTGTGAC 58 204563163 204564764 CGTCACAATCTTTGGTTTCTC 58 NA Rattus norvegicus 81 Inca1 ENSRNOG00000037418 ENSRNOT00000056620 3 1 1 81 10 57312225 57312243 CAGAAGAGCAGACCAATGC 59 57311960 57312182 TCATCCAGTTGGAGTTAGACC 59 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000060452,ENSRNOT00000016828 2 2 2 81 9 38687490 38716957 CCCAGACAAGTTTGATAAAGGT 59 38716999 38717017 TGGCGTATAGTCTGTCCTC 58 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 2 2 2 80 7 136700864 136704141 ATGAATGCAAGGATCAGACCA 60 136700804 136700822 CGATCTGATGAGACTCGGG 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 3 2 2 81 11 34592889 34592910 TTGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Rslcan18 ENSRNOG00000042283 ENSRNOT00000067090 2 1 1 80 2 122866079 122866098 TACATGTCTGGAGCAAAGGA 59 122866141 122867464 TGAGGAAACAAAGCTGGGA 59 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 2 2 2 80 7 13053311 13053329 CGCTATGACTACTTTGCCC 58 13053373 13053494 GTCCTGTTCAGTATCCGTG 58 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 3 2 2 81 2 206076488 206076506 AATCTCTTCGAGGCCTCTG 59 206076548 206109305 AGTCCACACTTTCACTAGTAGC 60 NA Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 2 2 2 80 2 149926953 149935413 AGTGACTCAACTGCTACAGG 60 149935454 149935474 GCCTGTAGTCCAGGATATAGC 60 NA Rattus norvegicus 81 Hoxc9 ENSRNOG00000016199 ENSRNOT00000021909 2 1 1 81 7 144596464 144596482 AAGCACAAAGAGGAGAAGG 57 144598285 144598303 GCTTCTTCCTTGTGGAACG 59 NA DesignNoJunction Rattus norvegicus 81 Oraov1 ENSRNOG00000020903 ENSRNOT00000028374 3 1 1 80 1 218077409 218078534 ATTGGATCTGAGATTGGATGCT 60 218078575 218078593 TTCTTTCTCACCAGCACCA 59 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843,ENSRNOT00000063781 1 2 2 98 9 43000895 43000913 CTGACTGGAGTAAGGACCC 59 43000494 43000833 TGGTGGTTCTGTCATCTCC 59 NA Rattus norvegicus 81 Tgm3 ENSRNOG00000006753 ENSRNOT00000063828 3 1 1 83 3 122570614 122570632 ATACATCAGCACCAAGGCA 59 122570679 122574191 TCCTCCTTGGAACCTTCTG 59 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984,ENSRNOT00000080418 2 2 2 80 12 40652931 40652949 GCCATGTTGCTTCACAGAC 60 40650474 40652890 AGGAGCTGGTTAATGAATTGTG 59 NA Rattus norvegicus 81 U2af2 ENSRNOG00000015914 ENSRNOT00000021391 3 1 1 80 1 72316549 72316567 GTATGGGCTGGTCAAATCC 58 72313006 72316505 TCCACAAAGATCTTTCCGC 58 NA Rattus norvegicus 81 RGD1309110 ENSRNOG00000017574 ENSRNOT00000055960 1 1 1 80 2 209001341 209001859 AATGTTCAACTTGACTCTGCC 59 209001281 209001300 CATACCTCTCACATCTGGCT 59 NA Rattus norvegicus 81 Bfsp1 ENSRNOG00000005707 ENSRNOT00000007727 1 1 1 90 3 137937932 137939442 TTGAAGGCAACAGGTTGAG 58 137937860 137937878 TTGGATCCAAGGCTGAGAG 59 NA Rattus norvegicus 81 LOC499796 ENSRNOG00000028112 ENSRNOT00000038906 1 1 1 80 3 36212513 36218473 GGACACCATTGAGATATCCGT 60 36218512 36218533 CTTCTCTTTCTCCTTCTCCTCC 60 NA Rattus norvegicus 81 Cept1 ENSRNOG00000017723 ENSRNOT00000036551 2 1 1 81 2 209121640 209121661 TCCTGTACAAATTACTTCCGTG 59 209121195 209121598 AAAGGACACTTGTTCCTGC 58 NA Rattus norvegicus 81 Coa5 ENSRNOG00000018102 ENSRNOT00000024366 3 1 1 98 9 44024758 44024776 TTATGAGGACAAGCCGGAG 59 44023269 44024696 GACTTTCCTTCCTGGAGCA 59 NA Rattus norvegicus 81 Prnp ENSRNOG00000021259 ENSRNOT00000028881 3 1 1 86 3 124518282 124518302 TGAACCATTTCAACCCAACTG 59 124518350 124529331 ATGATGGCTGATAGTCGGC 60 NA InUTR Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 1 1 1 61 3 20457290 20457314 GAAGATCCTGGAATCTATTACTGTC 59 20456967 20457271 CCCTGAATCACTGTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 1 2 2 80 7 139235710 139235728 TGTACCGATTGGCTCTCAC 60 139235307 139235669 GGATGAAGGTCATGTCTTTGAG 59 NA Rattus norvegicus 81 LOC100362987 ENSRNOG00000021159 ENSRNOT00000028733 2 1 1 60 9 10737716 10737736 TTATGGATGTGAAATGCCCAG 59 10737676 10737696 GTTTGTGTATGGCTAAAGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 2 2 2 80 14 82786218 82786593 CTTCACAGTCAAGCAGATGAG 59 82786635 82786653 GCTAGTGCCTTCTCATCCA 59 NA Rattus norvegicus 81 LOC691311 ENSRNOG00000021364 ENSRNOT00000034129 2 1 1 80 12 47504266 47504963 ATATCCCAGTGACGTTTCCA 59 47504205 47504224 ACAGACTCTTCGTCTTCCTC 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 2 1 3 149 11 36762882 36770740 GGAAATCTGCAAATGTGAGG 58 36775504 36778514 CGCATCTCTTCTTTCCAGG 58 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 2 2 2 131 X 21702158 21702368 AAGATATGGCTTATGGTGCCA 60 21702047 21702065 TGAATTGCTGCCTTTGCTC 59 NA Rattus norvegicus 81 Cox6c1 ENSRNOG00000032602 ENSRNOT00000043529 3 1 1 60 19 56983324 56983342 GATGCATGATCCTCTGTCC 58 56983282 56983300 GTCCACAATGAATGCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppox ENSRNOG00000003567 ENSRNOT00000004896 2 1 1 80 13 89650662 89650777 GACTGACTGTGATGTTGGG 58 89650600 89650619 GTTGGAATAGCTCTGGAGAC 58 NA Rattus norvegicus 81 LOC103690258 ENSRNOG00000052978 ENSRNOT00000081964 2 1 1 60 7 9136372 9136396 CTTCATAATCATCCTTCTTACCCTG 59 9136336 9136360 GAAGAAATACATAGGAGTCTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545,ENSRNOT00000080755 1 2 2 84 1 67831818 67831840 CCATGAGAATAATCTGCAAGAGG 59 67825939 67831776 TGAGTTTACCTTCAAGCAGTG 59 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607,ENSRNOT00000040162 1 2 2 80 8 55464568 55464586 GGAGAAACAGCACAACAGC 60 55458433 55464526 TACCAGTTCCTGAACTGTGAC 60 NA Rattus norvegicus 81 Rbpjl ENSRNOG00000026295 ENSRNOT00000019127 1 1 1 80 3 160853585 160854770 GGTAGTTGGACCAGGTCAC 60 160854814 160854832 CTCACATCTTTGCTGCAGG 59 NA Rattus norvegicus 81 LOC100360726 ENSRNOG00000045728 ENSRNOT00000074653 3 1 1 62 11 42936444 42936462 GGAAACCACTGATACGCTG 59 42940620 42940639 TATGTCACTGAGGGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 2 2 2 89 7 2824136 2824307 AGATTGGAGAATTCTGCATGG 59 2824067 2824085 ATTTGTTGGATGCCTGCTG 59 NA Rattus norvegicus 81 Adgrb3 ENSRNOG00000012045 ENSRNOT00000016194 1 1 1 80 9 31342682 31437037 ACTCAGACTCACAATAAGAGCA 59 31342623 31342641 GACCCAACAGAATGAAGCC 59 NA Rattus norvegicus 81 Zfp949 ENSRNOG00000043223 ENSRNOT00000032976 1 1 1 80 8 96377164 96377183 TCTTCAAGTTGGAACAGGGA 59 96377226 96378792 CCACATTGCAGAAGACTGG 59 NA Rattus norvegicus 81 Il10ra ENSRNOG00000016308 ENSRNOT00000021926 3 1 1 80 8 49568925 49568945 TGGAATCCCGAATTAACAAGG 58 49564691 49568884 TGGTCACGGTGAAATAATGC 59 NA Rattus norvegicus 81 Olr67 ENSRNOG00000034083 ENSRNOT00000051894 1 1 1 60 1 168118387 168118411 CCCATTGTGTACTGTATAAAGACTC 59 168118428 168118447 TAACCAACTTTCCCAAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC310177 ENSRNOG00000025157 ENSRNOT00000030328 1 1 1 60 2 77784028 77784046 GAGTGGAAACCCTCTCCTG 59 77783986 77784005 AACCTTGAAGTTGGTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366054 ENSRNOG00000033515 ENSRNOT00000046076 2 1 1 84 13 88299522 88300017 TGTGACTGCTACATTCAGGA 59 88300064 88300082 TCTTGAGGACATCCAGCAC 59 NA Rattus norvegicus 81 Srsf4 ENSRNOG00000010007 ENSRNOT00000013301 3 1 1 80 5 150050600 150050618 GAACGAGTCATTGTTGAGC 57 150050661 150051440 TCGATAACCATATCCACTGC 57 NA Rattus norvegicus 81 RGD1565616 ENSRNOG00000021237 ENSRNOT00000028842 1 1 1 80 3 123273554 123274430 GAGTATGGCAGATGGATGG 58 123273492 123273511 AAGGTATTTCTGGAAGTGGG 57 NA Rattus norvegicus 81 Mgat4d ENSRNOG00000003695 ENSRNOT00000004982 2 1 1 80 19 24528388 24528406 AAACCATCTCTGTTCCAGC 58 24528445 24532610 CTAGTAGTAATGATCCTTGAGGTG 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161,ENSRNOT00000077908,ENSRNOT00000090143 2 4 4 80 1 201305594 201306737 CTCCATGTTCAGGGTCGAG 60 201306781 201306799 CTCTAGGGACTGGATGCTG 59 NA Rattus norvegicus 81 Phf6 ENSRNOG00000002276 ENSRNOT00000003091 2 1 1 80 X 158735116 158735137 CTGATAATGAGAGTCTTGGTGG 58 158721183 158735076 GAGAACACATCAGCTTTGTG 57 NA Rattus norvegicus 81 Efcab3 ENSRNOG00000042255 ENSRNOT00000008019 3 1 1 82 10 93324514 93332383 CTCTCAAACAGCATGTAAAGAG 58 93332425 93332444 GAGGTTCAGCATTTCTTTCC 57 NA Rattus norvegicus 81 Ucp1 ENSRNOG00000003580 ENSRNOT00000004900 3 1 1 82 19 24460933 24461042 CAACACTGTGGAAAGGGAC 59 24461086 24461106 CATGAGGTCATATGTCACCAG 58 NA Rattus norvegicus 81 Dmxl2 ENSRNOG00000009170 ENSRNOT00000066197 2 1 1 80 8 58950582 58950603 AACAGGAAGTTCTTCAAGAGAC 58 58946621 58950545 CATGTTCTTCTACAGACTCACTC 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821 2 2 4 80 13 91149664 91154285 ATCTGGAAGTGATTTCTGACTG 58 91149605 91149626 ACCTCAATGTGATTCTTTCTCC 59 NA Rattus norvegicus 81 Mtdh ENSRNOG00000006870 ENSRNOT00000009989 3 1 1 80 7 72804148 72804169 TGGTGATACTAATGCAAATGGG 59 72804210 72809684 GCAGTAGATCCAATGCCAG 58 NA Rattus norvegicus 81 Ptcd2 ENSRNOG00000028403 ENSRNOT00000034992 3 1 1 80 2 29579842 29583175 GTTAGCTCTGAATCAGAACCA 58 29579782 29579802 GTACACGTTATGCTTTCTGGA 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339,ENSRNOT00000051425,ENSRNOT00000066896,ENSRNOT00000063918 1 5 5 80 1 215676242 215678553 AGACCCAAACTTACTGCTCC 60 215679174 215679194 CTTGTTCTGACGCTTCTTCTG 60 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728,ENSRNOT00000090426 2 2 2 95 3 57898148 57901104 CTGTACCGAGGTCTGATCC 59 57897832 57897851 TCTGGTAAATTTGTCCCGGA 59 NA Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000066001,ENSRNOT00000086962 2 2 2 93 5 62141130 62141148 TCTCTATCAGGGTGTGGGA 59 62139562 62139580 ATCTGCTGTCCCATCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cdk7 ENSRNOG00000018510 ENSRNOT00000025026 3 1 1 80 2 30722690 30722710 TAAAGCCTACATGCTGATGAC 58 30721680 30722649 TTTGGTTTCAGATCCCTGTG 58 NA Rattus norvegicus 81 Erich6 ENSRNOG00000013662 ENSRNOT00000018294 2 1 1 80 2 148831548 148837198 TGACTGTAGATAGACTTATGTACCC 59 148831492 148831512 GAAGCCAACTTTGGTCTTCTG 60 NA Rattus norvegicus 81 Atp2a1 ENSRNOG00000047124 ENSRNOT00000074778 3 1 1 87 1 197857234 197857252 TGAACATCTGGCTTCTCGG 60 197857012 197857183 TTGAAGATCATCGGCAGGG 60 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 2 2 2 80 16 9650719 9650740 TCCTACCTTCTCTATCAAATGC 58 9640822 9650678 ACTAGGCTTTAAGTCCCGA 58 NA Rattus norvegicus 81 Rbm43 ENSRNOG00000004673 ENSRNOT00000006172 2 1 1 120 3 37437396 37440482 AAAGAAAGTTGCACAGACCA 58 37436590 37436610 CAAATCAAGAATGGCCATCAC 58 NA Rattus norvegicus 81 Rab33b ENSRNOG00000013035 ENSRNOT00000017396 1 1 1 80 2 140542263 140549531 ACGCATTAAGATCCAGTTGTG 59 140549572 140549591 ACGTTCCTGTAGTAGTGCTG 60 NA Rattus norvegicus 81 Ccdc160 ENSRNOG00000046484 ENSRNOT00000071222 1 1 1 60 X 140176526 140176544 CCAGCAAGCCAAAGAAGTC 60 140176568 140176586 AGCGTCTTTCAAGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap31-1 ENSRNOG00000036838 ENSRNOT00000055286 2 1 1 60 10 87833155 87833173 TGCTTCCTACCAACTTGCT 59 87833196 87833215 AGGTGGGTTTAATCGAGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myf6 ENSRNOG00000004878 ENSRNOT00000006523 3 1 1 82 7 49740249 49740555 TAAGGAAGGAGGAGCAAGC 59 49740185 49740205 CTGAGGAAATACTGTCCACGA 60 NA Rattus norvegicus 81 Pmel ENSRNOG00000023085 ENSRNOT00000049972 2 1 1 80 7 3133914 3138246 CTATAGAAGGATCCAGGAATCAG 58 3138286 3138304 GGTACAGCTGCTTATTCCA 57 NA Rattus norvegicus 81 Eif5a ENSRNOG00000016478 ENSRNOT00000022343 1 1 1 91 10 56528018 56528036 GTACGAGAGGACCTTCGTC 59 56527855 56527964 AGCACTGTGATCAGGATCTC 59 NA Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327 2 1 2 81 20 46507100 46507118 CAGGCCTCATCTCAAAGCT 60 46507163 46518668 GTCAGTTTGAGGGTCTGCT 60 NA InUTR Rattus norvegicus 81 Rtn4rl2 ENSRNOG00000021513 ENSRNOT00000038250 2 1 1 118 3 72283073 72283091 CACTACATCTGTACCGGTG 57 72274188 72282991 CAAGTCATCCTGTAGGTGG 57 NA Rattus norvegicus 81 Zbtb33 ENSRNOG00000046156 ENSRNOT00000074486 2 1 1 60 X 124322378 124322396 CAAGTAACAACACAGCGAC 57 124322418 124322438 ACTTCCGAAATAGCAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025825.1 ENSRNOG00000032977 ENSRNOT00000048104 2 1 1 96 16 52025219 52025238 TCTCGAGTACATGACAAAGG 57 52025297 52025396 AAAGCCTGACAGAACTGAG 57 NA Rattus norvegicus 81 Cd40lg ENSRNOG00000000871 ENSRNOT00000001162 2 1 1 80 X 159703845 159705751 GAAGATTGGATAAGGTAGAGGAGG 60 159705788 159705808 CTTTGTTGCACCTCTTTAGCT 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000076489 3 1 6 83 10 89212115 89212134 TGCATCCACTTTAGGTACCG 60 89211528 89212071 CGGCAACTCCTTAGATTTGTC 59 NA Rattus norvegicus 81 Fam213a ENSRNOG00000011140 ENSRNOT00000014819 2 1 1 94 16 17504439 17504458 CCAACACAGACATGTTTCTC 57 17504515 17506004 TGTCCTTGGTTCTTTCTCC 57 NA Rattus norvegicus 81 Gstm1 ENSRNOG00000029726 ENSRNOT00000047139 1 1 1 80 2 210807887 210807905 AGACATTGTGGAGAACCAG 57 210806657 210807843 TTCTGCTTCTCAAAGTCGG 58 NA Rattus norvegicus 81 RGD1564915 ENSRNOG00000054673 ENSRNOT00000056461 3 1 1 60 2 194390173 194390193 CTCTGTGAAGAATGCTGTACC 59 194390215 194390233 CAGGTGCTTTGTACTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gns ENSRNOG00000046159 ENSRNOT00000006566 2 1 1 80 7 65628921 65628939 CAGTACCAGAAGGCTTTCC 58 65628983 65631033 TAACCAGTGCTTGTTCGTC 58 NA Rattus norvegicus 81 Serpini2 ENSRNOG00000009903 ENSRNOT00000013452 1 1 1 81 2 173652243 173654244 GGAATAACAGACTCATCTGAACTC 59 173652185 173652209 CTTCACTTCCGTCTTCATTTATCTC 60 NA Rattus norvegicus 81 Aarsd1 ENSRNOG00000020658 ENSRNOT00000028047 2 1 1 80 10 89324466 89324484 GTTGTTACCATCGAGGGTG 58 89324166 89324425 CTTAATGACCTGAAGGTCACTG 59 NA Rattus norvegicus 81 Depdc1 ENSRNOG00000009503 ENSRNOT00000012667 3 1 1 80 2 264715724 264716141 TACGTTACTATGATCTACCTGC 57 264716181 264716200 AGGAATTACTTGGTTTGGGT 57 NA Rattus norvegicus 81 Smim12 ENSRNOG00000014352 ENSRNOT00000019224 1 1 1 60 5 145314379 145314397 CTGGAATGGTTCATCAGGG 58 145314419 145314439 CCAAGATACTCTTCTCCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC257642 ENSRNOG00000048268 ENSRNOT00000071572 3 1 1 133 14 46593807 46593825 GATCCCTACAACTCGGTGG 60 46588730 46588748 AGAGGGTGTAAATCTCGCG 60 NA DesignNoJunction Rattus norvegicus 81 Pdk1 ENSRNOG00000001517 ENSRNOT00000002072 3 1 1 80 3 58547133 58553562 GGATTTGACTGTGAAGATGAGTG 60 58553597 58553620 GAGTACATGTAGTTGAAGAGTCTG 59 NA Rattus norvegicus 81 Bmpr1a ENSRNOG00000052469 ENSRNOT00000079554 2 1 1 80 16 10760186 10761132 GTATTACAGGAGGAATCGTGG 58 10760126 10760146 GCATGTCTTCATAAGATGGGT 58 NA Rattus norvegicus 81 LOC100910697 ENSRNOG00000050594 ENSRNOT00000050480 3 1 1 60 X 95352417 95352436 CACAGTGACTCAGTTCATCC 58 95352458 95352477 GAGTGGATAGCGTACCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc16 ENSRNOG00000031638 ENSRNOT00000050854 3 1 1 60 X 116400417 116400438 GCAAGAAACTCAGTTATGTCTC 58 116400457 116400477 AAGGCAATCTCTTGTGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064,ENSRNOT00000064184 2 2 2 84 1 101170254 101170272 ATACTCACACTCCAAGGGC 59 101170318 101170701 CACGTTAAACCCAGAGATAGC 59 NA Rattus norvegicus 81 Ccdc63 ENSRNOG00000034266 ENSRNOT00000046604 3 1 1 80 12 39913729 39913747 GTTCCGGAAGATGGTAGAC 57 39913790 39916615 TCTATCTCCTTGTACTGGCT 57 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 1 2 2 80 19 25247896 25248000 CTAGAAAGGAAGATCCTGGC 58 25247835 25247853 TACTACGTCCTGGTACTGC 58 NA Rattus norvegicus 81 Gprasp2 ENSRNOG00000037658 ENSRNOT00000004260 2 1 1 60 X 106362076 106362096 CACCATTGAATTTACACCTCC 57 106362116 106362136 TATAAAGGGTCTTGGGAAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr93 ENSRNOG00000047377 ENSRNOT00000021179 2 1 1 60 1 168464306 168464325 CAAGCGTTATAGCCTTGGTG 59 168464265 168464286 GGCAATGAAGAAACAATCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563606 ENSRNOG00000002975 ENSRNOT00000003981 3 1 1 60 X 16946428 16946448 CTACATCTACGAGAAGCCTCC 60 16946469 16946488 CTCTTCAGTTTGCACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo21 ENSRNOG00000001129 ENSRNOT00000064900 1 1 1 80 12 44265809 44265827 CCAGCTCAAGTTCAAAGGG 59 44264421 44265766 GTTCTGCGAGTCAATACCTG 59 NA Rattus norvegicus 81 Ankrd34c ENSRNOG00000013937 ENSRNOT00000018685 1 1 1 80 8 97107144 97114639 CTCTGGATAAGCAGGTCTG 57 97107082 97107101 TCAACTCAGTGTCATCATCC 57 NA InUTR Rattus norvegicus 81 Arl6ip6 ENSRNOG00000005074 ENSRNOT00000006774 3 1 1 80 3 38753187 38766891 TAGGTTCAAGAAACTGACTGGA 59 38766932 38766950 GTGAGAGCAGCTACAACAC 59 NA Rattus norvegicus 81 Tmem189 ENSRNOG00000060571 ENSRNOT00000090493 1 1 1 131 3 164377553 164378117 TATCACCACAGGTTGGCTC 59 164377440 164377458 TACTTGATCTTCTGGGCCC 59 NA Rattus norvegicus 81 Syce2 ENSRNOG00000003279 ENSRNOT00000004404 2 1 1 87 19 25999950 25999969 AGTCATCTGGAAATGGAGCT 59 26000019 26001063 AAGTGGGAACCTCAGACTG 59 NA Rattus norvegicus 81 Rbbp6 ENSRNOG00000012806 ENSRNOT00000035770 1 1 1 80 1 192948626 192951459 ACCGACTATAGACGCAGAG 58 192951503 192951521 GAAGATGACGATGGCTCCT 59 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 1 1 1 61 1 207655049 207655705 GAGATGAGAACGACCCAGG 60 207655729 207655748 CATCTTCTCACAGTTTGGGT 58 NA DesignNoJunction Rattus norvegicus 81 AABR07054718.1 ENSRNOG00000050384 ENSRNOT00000072043 1 1 1 80 3 167579800 167579820 GATCCTGCTCAGAAGAATCTC 58 167579860 167580083 TTCCCAAATGTAGCCTATAGC 58 NA Rattus norvegicus 81 LOC100910447 ENSRNOG00000003863 ENSRNOT00000005270 2 1 1 129 19 26143080 26143098 AATCAGAAGAGGAAGGGCG 60 26145459 26145737 TTGTTAATACCTCATCCTCCGT 59 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 3 2 2 91 10 59897576 59897596 GTTTCCCATCTCTACCAACAG 59 59900813 59900954 TGGTATTTGCCCTGTATTCAC 58 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015,ENSRNOT00000091896 1 2 2 80 2 211227197 211227216 AGAGCGATTTGAGAACCTCC 60 211226237 211227154 TTGTCTGCATCCTCATCGT 59 NA Rattus norvegicus 81 Utp23 ENSRNOG00000004387 ENSRNOT00000005828 2 1 1 80 7 91387941 91387961 CTGAATGTCTCCTGTCTATGG 58 91388000 91389073 TCACAGATAAGTTCTGATCCTG 57 NA Rattus norvegicus 81 Syndig1 ENSRNOG00000031536 ENSRNOT00000068210 1 1 1 80 3 145129298 145129316 GTGTCTTCTCCATGCTCTG 58 145129360 145198050 CCACAGCTTTGTTTGTCTC 57 NA Rattus norvegicus 81 Arse ENSRNOG00000028350 ENSRNOT00000033080 1 1 1 84 2 122878894 122879439 CTATCCGCTCAGGGATGAC 59 122879487 122879505 ATCTCCTTTGGAGGAAGGC 59 NA Rattus norvegicus 81 Tsks ENSRNOG00000020443 ENSRNOT00000049584 3 1 1 80 1 100947016 100947034 GTGCTGAGTGAGAATCTGG 58 100947077 100948054 GCAGTTCTCCTTCAATTGAC 57 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 3 2 2 80 10 91883440 91883460 GTCAAAGGGAAGAAAGTCTGG 59 91880608 91883398 GTACTCAGGGTCCATCTGC 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000078309 1 1 3 89 20 5227643 5227838 CACTCCTCCAGCTACACTC 59 5227308 5227326 CTGGATCTCCTTCTCAGCG 60 NA Rattus norvegicus 81 Rap1gap ENSRNOG00000013825 ENSRNOT00000046802 2 1 1 80 5 156065424 156066910 CTTCGAGTCTTTCAAGAGGGT 60 156066951 156066970 GTGTTGGGTTTCTTGTTGCT 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 3 3 3 80 3 147803946 147803964 TTACATGCACACTGTCACC 58 147803023 147803902 TCCAGGAATACCATGTCCT 57 NA Rattus norvegicus 81 Cish ENSRNOG00000029543 ENSRNOT00000040056 3 1 1 86 8 116057693 116057711 AGAATGAACCGAAGGTGCT 59 116057761 116058001 AGTACCAACCAGATTCCCG 59 NA Rattus norvegicus 81 Sgsm1 ENSRNOG00000000708 ENSRNOT00000000898 3 1 1 80 12 49355586 49355605 GTCATGACCTTGAAGTGGAC 59 49355647 49357613 CCAGTAGACACTCTTCTCGT 59 NA Rattus norvegicus 81 Helq ENSRNOG00000002181 ENSRNOT00000002974 3 1 1 80 14 10480066 10480087 CTACCTAACCACACCCTATGAC 60 10480126 10481502 CTGAGTTGACTAAACTGCCTG 59 NA Rattus norvegicus 81 Anxa5 ENSRNOG00000014453 ENSRNOT00000019554 2 1 1 80 2 123163532 123163750 TATGCTATGAAGGGTGCTGG 60 123163471 123163495 GTTAAACAGATCAATCTCACTCCTC 60 NA Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000087065 3 1 2 81 1 203532736 203534475 ACAAACAGGGTTATGTGTTGAG 59 203534517 203534535 TTCTTCTGAACCTCAGGGC 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 1 3 3 60 10 89286249 89286267 ATCAATCTCCTCTGGGTGG 59 89286289 89288266 GAATCCACTTAAAGACGAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Trim62 ENSRNOG00000049496 ENSRNOT00000072908 2 1 1 83 5 147094530 147094806 AACCACTTCAGGACTCACC 59 147094852 147094871 AGTAGTGGACACCACTACTG 59 NA Rattus norvegicus 81 Tbl1xr1 ENSRNOG00000011216 ENSRNOT00000015573 3 1 1 80 2 107350463 107350481 TCCTGATGGCAGGTATCTG 59 107350524 107352342 TGAACTAGAGCACCTGTCTG 59 NA Rattus norvegicus 81 Slc5a1 ENSRNOG00000017775 ENSRNOT00000024165 1 1 1 80 14 82922052 82922071 TTCACCATGGACATCTACAC 57 82920086 82922010 GAGGATGAACAACCTTCCTG 58 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 3 2 2 80 2 27952981 27953913 TGTGCACATTCATACCACG 59 27953956 27953975 CTTCTTGTAAGAGGCACCTG 58 NA Rattus norvegicus 81 Helz ENSRNOG00000003213 ENSRNOT00000030300 3 1 1 80 10 95893236 95893255 TTGGTCAAGAGCCATTTCAC 59 95893297 95905211 TGGGCTCATACTCTTCTAGG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172,ENSRNOT00000065342 3 2 2 80 1 193221653 193222876 CGAACCAATGAGAAGGGTG 59 193222920 193222938 GACAAAGTCCAGGATCAGC 58 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142,ENSRNOT00000083329 3 2 2 80 8 128795223 128795242 GCTGTCTGTGTTCTTGAAGG 59 128795283 128797932 CATCTCACAATGGAAGGAGAC 59 NA Rattus norvegicus 81 Nf2 ENSRNOG00000007948 ENSRNOT00000010690 3 1 1 80 14 85046019 85046037 GATGACTCCGGAAATGTGG 58 85043219 85045975 ATTTCAGCTTCATCCCTGG 58 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000007870 1 1 2 80 13 111971479 111972200 AGTTCAGACCAGAAATGCTC 58 111971418 111971438 GATATGCCATTTCTCTTCCGA 58 NA Rattus norvegicus 81 Tmed5 ENSRNOG00000000073 ENSRNOT00000000083 3 1 1 80 14 2632190 2633866 ACCTCCTCGACTTTAAAGCT 59 2633908 2633927 CTTCAATGTGAGCTGGTGTG 60 NA Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 3 2 2 81 9 43077782 43078065 CACGTACACTGACAATCGA 58 43078109 43078128 ATTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 LOC102546814 ENSRNOG00000046421 ENSRNOT00000073540 1 1 1 80 2 174213604 174216003 GTATCATCTTTGCTTCCATCAG 57 174216042 174216062 CTGACTACCTTGAATCTCGTG 58 NA Rattus norvegicus 81 AABR07067459.1 ENSRNOG00000061227 ENSRNOT00000086086 3 1 1 77 9 47065016 47065034 GACTATCCACCCTGATGCT 59 47062550 47062568 CTTGTGATGCTGGCAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Msi2 ENSRNOG00000025338 ENSRNOT00000003164 1 1 1 80 10 76039043 76039062 CCCACCATGAGTTAGATTCC 58 75915320 76034976 TTCTTGTGACCATCTTGGG 57 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 1 2 2 80 9 56110 56129 TATGGCAGAGCAAATGATCC 58 56170 57789 TGAGCTCATCGTTACTAAACC 58 NA Rattus norvegicus 81 Vom1r55 ENSRNOG00000049810 ENSRNOT00000072551 1 1 1 60 2 168260142 168260161 TGGGTTTATAGGCATGTTGG 58 168260101 168260121 TGATGACCAGATTGAAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006688.1 ENSRNOG00000030934 ENSRNOT00000048735 1 1 1 60 1 248213693 248213712 TCATGTCTGTCTCATCGTCC 59 248213652 248213670 GTTGTTGCGAAGTCTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scpep1 ENSRNOG00000002358 ENSRNOT00000003219 3 1 1 80 10 76253181 76253886 AAGAATTCCAGACGGTTCC 58 76253119 76253139 GAAGTTCTAAACTGATGCCAG 57 NA Rattus norvegicus 81 Rprml ENSRNOG00000028436 ENSRNOT00000033276 2 1 1 63 10 91710981 91710999 ACTTTCTGATGCAGGAACG 58 91711026 91711044 CAGTACAGTCCCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680489 ENSRNOG00000026351 ENSRNOT00000035538 2 1 1 60 X 45000181 45000200 GGAGAGTCTGCATTTACCAC 58 45000140 45000159 TATTCATGGCACACTCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909836 ENSRNOG00000045621 ENSRNOT00000070868 2 1 1 86 12 47031895 47036817 GAGGACAGATGTCTCTACCT 58 47036864 47036884 CACAACGTGATTTGAGTTCTG 58 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938,ENSRNOT00000056562 3 2 2 160 8 98756837 98756856 ATGAAAGTTCATGGTCGCTC 59 98756978 98759151 AAGCAACATCATTCGCTCAC 60 NA InUTR Rattus norvegicus 81 LOC100909818 ENSRNOG00000047479 ENSRNOT00000072996 3 1 1 60 1 169598257 169598275 TTATGGGCTCTTTGTGGTC 57 169598215 169598235 TGACAAGCCAATTAGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037798.1 ENSRNOG00000003342 ENSRNOT00000004451 1 1 1 62 X 31012951 31012969 AGATCAGCAAGAGGAAGCC 60 31012890 31012908 GATACTGACCCAGGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Sdpr ENSRNOG00000025895 ENSRNOT00000028907 2 1 1 83 9 55255650 55255668 AAGAGGCTGGAGAACAACC 60 55245688 55255605 AGGGATCTCACTTTCTTCCTG 59 NA Rattus norvegicus 81 Bche ENSRNOG00000009826 ENSRNOT00000013279 3 1 1 91 2 171121780 171121799 TAAACTCTAAACTCCGGGCT 59 171104581 171121730 CTCCCTTTCATCAATATCTCCTG 59 NA Rattus norvegicus 81 Crabp2 ENSRNOG00000048421 ENSRNOT00000072198 3 1 1 111 2 184883142 184883349 ACCCTGTAAGAGTTTGGTG 57 184883424 184883442 ATCATTGGTCAGTTCTCGG 57 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 2 2 2 60 14 85948311 85951511 CACAGGTAACCTGGATGGAG 60 85948270 85948289 AAGGAATACATCCTCCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Nxpe2 ENSRNOG00000027847 ENSRNOT00000037353 3 1 1 80 8 60339658 60339679 ATGACAACCAAGAATAGTGACG 59 60337841 60339620 TTCAACTCCTATGTTGAACCTC 58 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 1 2 2 80 16 32457630 32457652 CAGGTGCTATTATGGACTTTCAG 59 32457689 32490249 TTGTATAATGAGTTCCAGCTGC 59 NA Rattus norvegicus 81 Srek1 ENSRNOG00000032735 ENSRNOT00000040533 1 1 1 80 2 33818801 33818821 CAAGAGCCCACATAAGAAACG 60 33818416 33818759 TTTCTCTTGTCCCGTGACC 60 NA Rattus norvegicus 81 Siglec5 ENSRNOG00000021474 ENSRNOT00000033648 1 1 1 80 1 98566177 98566199 CTTGGAATGACTATGGAGTTCAG 59 98565845 98566139 TTTCTGATTTGTCTGCCTGTG 59 NA Rattus norvegicus 81 Sar1b ENSRNOG00000004820 ENSRNOT00000006567 1 1 1 81 10 37236865 37242262 CATTTGCAAGCCCGAAGAG 60 37242307 37242325 CATGGTCTGCACAATCCAC 59 NA Rattus norvegicus 81 Msx1 ENSRNOG00000006876 ENSRNOT00000009101 1 1 1 182 14 77712767 77712785 GAGAAGCTAGATCGGACCC 59 77714970 77714988 AGACAGGTACTGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Noc4l ENSRNOG00000037478 ENSRNOT00000056725 1 1 1 80 12 52073706 52073997 TCTTTAGGGCAGTGGTAGG 58 52074040 52074059 CCAAGTACTCACAGAACTGG 58 NA Rattus norvegicus 81 Leap2 ENSRNOG00000007218 ENSRNOT00000049820 2 1 1 60 10 38774415 38774433 TCTTTGCAGTGCTTCTGAC 58 38771238 38771256 AGATGAACGTGGACAAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Pstpip1 ENSRNOG00000016413 ENSRNOT00000063930 1 1 1 80 8 60795767 60796588 AAGGACGATGAGCTCTATGAG 59 60796626 60796648 CTGGATGAAGCCATTGATATCAC 60 NA Rattus norvegicus 81 Trex1 ENSRNOG00000022540 ENSRNOT00000033719 1 1 1 68 8 117797128 117797427 CTTGTTGCCTGCTTATCGG 59 117797078 117797096 ATGAGGGTCTGCATGTGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 2 1 2 69 10 62053946 62106110 CATTTCTGGAGGACACAGG 58 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clcf1 ENSRNOG00000018752 ENSRNOT00000025342 1 1 1 103 1 219469288 219471030 GGACCTACCTGAACTACCTG 59 219471096 219471114 CACTTCCAAGTTGACCGTG 59 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000004693 2 1 2 86 X 31759086 31761209 CTCCATGAAGGTCCACCTG 60 31759018 31759039 GTAGATGGCTTGATGACATGTG 60 NA Rattus norvegicus 81 Nans ENSRNOG00000008945 ENSRNOT00000012260 1 1 1 80 5 62114497 62114515 AGTACAAGGAGCTGCAGAG 59 62114558 62120560 ACTCAACTGCCATCTCATCC 60 NA Rattus norvegicus 81 Cracr2b ENSRNOG00000050158 ENSRNOT00000071831 3 1 1 100 1 214006136 214006231 TCAGGATTTGCAGGGTCTG 60 214006295 214006313 CTGTCAAGAAGCCAGTGTG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000061213 ENSRNOT00000084294 2 1 1 81 2 30744562 30744580 GTAGTGAAGCCACATGCTC 59 30742318 30744519 ATCTCAAAGTGTCTGAAGCAC 59 NA Rattus norvegicus 81 Fam45a ENSRNOG00000010230 ENSRNOT00000013845 2 1 1 88 1 282208039 282208060 GCAAACTGCATAAAGAGATTGG 59 282208107 282210218 GGCAATGTCCTGTATAACCTG 59 NA Rattus norvegicus 81 Oasl2 ENSRNOG00000028814 ENSRNOT00000001600 1 1 1 80 12 47480323 47482701 GTGCTTAAAGTGGTAAAGGGAG 59 47480264 47480284 GAACAGAATCATGTCCTGGTC 59 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171,ENSRNOT00000083387 2 2 2 82 9 1313267 1313285 AGACATCCTCTGCAGTCAG 59 1313331 1363302 CAGGAATCTCCTCTTGGCT 59 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000085049,ENSRNOT00000064830 3 2 2 71 8 61914754 61914772 CAGAGATGAGCCAGAAAGC 58 61914701 61914719 TTCTTCCCTGGCTTCTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Star ENSRNOG00000015052 ENSRNOT00000020606 2 1 1 80 16 71038164 71038184 GACTCTATGAAGAACTGGTGG 58 71038000 71038123 TCTTCAGGACCTTGATTTCC 57 NA Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069 1 1 2 83 5 154221696 154221717 CCTTGAACCCTTCAGATAAGGA 60 154219101 154221658 GATCTTCACTGTACTTCATTACCTG 59 NA Rattus norvegicus 81 Ankrd13a ENSRNOG00000001204 ENSRNOT00000001595 3 1 1 80 12 47572483 47573025 TTAAGGGAGGAGACAACTGG 59 47572422 47572441 AAAGATCGAAGTGTTCGGTG 59 NA Rattus norvegicus 81 Xcr1 ENSRNOG00000006620 ENSRNOT00000008747 1 1 1 131 8 132915612 132919028 TCAGACTCAGATGCTCTCAG 59 132915500 132915520 GACAATGGTGAAGATGATGGA 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261,ENSRNOT00000052403 3 2 2 80 2 210747436 210747455 GAATGTTTGTACCCAAGTGC 58 210745971 210747393 AGATCTTCTTCAGGCCCTC 59 NA Rattus norvegicus 81 RGD1305537 ENSRNOG00000005112 ENSRNOT00000061680 2 1 1 60 1 231365092 231365110 AGCCAGAGATAGCAGAGGA 60 231365050 231365071 TGCTCCATAACTTCAAACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299,ENSRNOT00000085725 2 2 2 96 8 87229247 87229953 GCTTTGCTTAATCCAAGTAAGG 58 87229172 87229190 CGTTAAACATGCTGTTGGC 58 NA Rattus norvegicus 81 LOC684170 ENSRNOG00000048866 ENSRNOT00000067344 2 1 1 60 1 167991777 167991795 GTTTAGCCTGTCTCTGGTG 58 167991735 167991755 CATTGCATGGACTACTTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccrl2 ENSRNOG00000033234 ENSRNOT00000044467 1 1 1 146 8 119326205 119326223 TTATCTCGCCAGCTTGTCC 60 119325753 119325771 ATTATCCATCGGAGGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Pls1 ENSRNOG00000009945 ENSRNOT00000013209 1 1 1 80 8 103584642 103584661 ATCAGATTGCTCCCAAAGGT 59 103582342 103584602 GGTCGTTCTTCTCGTTAAATCC 60 NA Rattus norvegicus 81 AC107280.1 ENSRNOG00000031401 ENSRNOT00000048808 3 1 1 90 8 117478579 117478600 TTGGCTATGATGTTGAAGACC 58 117478509 117478530 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Mrgprf ENSRNOG00000013426 ENSRNOT00000017948 3 1 1 80 1 218470101 218474422 ACCAGAACAAGATGTGTCCT 59 218474464 218474483 TGGCAATCTGTTCAATGGTC 59 NA Rattus norvegicus 81 Olr339 ENSRNOG00000012838 ENSRNOT00000017126 2 1 1 60 1 229722906 229722928 ATGGTCATCATCTTCTCAGACTC 60 229722942 229722966 GGTTACATAGAAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lck ENSRNOG00000009705 ENSRNOT00000012936 2 1 1 82 5 147758903 147759062 TGTGGATGGGATACTACAATGG 60 147758842 147758860 CAGGAAGGCATCAGGAGAC 60 NA Rattus norvegicus 81 Lck ENSRNOG00000009705 ENSRNOT00000012936 3 1 1 86 5 147759111 147759129 GAATGGGAAGTTCCCAGAG 58 147758905 147759063 ATTGTAGTATCCCATCCACAC 57 NA Rattus norvegicus 81 Olr110 ENSRNOG00000015924 ENSRNOT00000021307 2 1 1 60 1 168655888 168655906 GCTTCCCTCTGATCTTCCT 59 168655929 168655948 TGACGAATGATGTTCTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd28 ENSRNOG00000019697 ENSRNOT00000026680 3 1 1 80 16 7866223 7866241 AGCAATGTGAACGTGTCAG 59 7864604 7866179 CTTGACCATCTCACCATGC 59 NA Rattus norvegicus 81 LOC100360154 ENSRNOG00000038864 ENSRNOT00000059383 2 1 1 80 8 50604892 50604911 GTACAGGCCGATTTAATGGT 58 50604954 50605003 AATCGGAGATAGACTCGCC 59 NA Rattus norvegicus 81 Sacm1l ENSRNOG00000005149 ENSRNOT00000007223 3 1 1 80 8 132657086 132657109 ACTCAGTGGATGAATTAGACTCTC 60 132657148 132658348 CCATGATGATAGGCAACGC 59 NA Rattus norvegicus 81 Cyp11a1 ENSRNOG00000008074 ENSRNOT00000010831 3 1 1 80 8 62780176 62798476 CAAGACATTGTCCTCGATCC 59 62798519 62798537 CCCTCAGGAAGTGGTACAG 59 NA Rattus norvegicus 81 Cnksr1 ENSRNOG00000022838 ENSRNOT00000031225 2 1 1 80 5 152452035 152452185 CGTGGACAGACTCTACCTC 59 152451973 152451993 CTGTTTCTTCTGGAAGAGTGC 59 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 2 2 2 80 3 83005853 83008360 CAGAAGAGTTAGCAAAGCGT 59 83005792 83005813 TGTTGTTGGAAACTTCCTTCAG 59 NA Rattus norvegicus 81 Cyp1a1 ENSRNOG00000019500 ENSRNOT00000026473 2 1 1 80 8 62476169 62476187 CTGCTATCTCTTGGAGCCT 59 62476230 62476342 TCACTGTGTCTAACTCCTCC 59 NA Rattus norvegicus 81 LOC102550797 ENSRNOG00000047861 ENSRNOT00000075593 3 1 1 81 8 40879642 40880376 AGCAACATCTGGTCTCAGG 59 40879579 40879599 AGCAACCTATTCTTCAGGAGG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152,ENSRNOT00000048985 2 3 8 100 20 4485153 4485261 CTTTACTACTGGTGGGCTG 58 4485325 4485343 CATTGAGGAAGATGGTGGT 57 NA Rattus norvegicus 81 Pbx2 ENSRNOG00000000440 ENSRNOT00000082667 1 1 1 92 20 4359913 4359931 TACTCCCACCTGAGTAACC 58 4359987 4360089 CCAGTTGGAAACCTGAGAG 58 NA Rattus norvegicus 81 Camk2n1 ENSRNOG00000016322 ENSRNOT00000021864 3 1 1 89 5 156876805 156876824 GACACCAACAACTTCTTCGG 60 156876875 156878266 ATCTTCAATAACAACGCGCT 59 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 2 2 2 80 16 73955726 73956394 TCCGAAGTGACCAATTTGTG 59 73955665 73955683 GTCGAAGATTCAGCTGGAG 58 NA Rattus norvegicus 81 Dkk4 ENSRNOG00000019267 ENSRNOT00000026067 1 1 1 88 16 74262449 74262467 AGAGGGAACCACCAAATGG 60 74261542 74262397 CCTCCTGTCCCTTATTGCT 59 NA Rattus norvegicus 81 Tspyl4 ENSRNOG00000000547 ENSRNOT00000000658 1 1 1 60 20 41100995 41101016 AAGTTCATCTTCCAAAGCAACC 60 41101037 41101055 GCTCGTACTCTTTGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpd2l ENSRNOG00000048758 ENSRNOT00000071064 2 1 1 61 20 28873131 28873149 AGATATGGACTGAGGTCCC 58 28873088 28873106 CTTGTTGACAGGCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 3 2 2 83 16 74548730 74550598 AGATGAACTGGGTCCTATCC 58 74550644 74550662 CAATCCACCGGATACACAG 58 NA Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 1 1 1 60 16 75119989 75120366 GTAGTTGAACTGCCATCAGG 59 75119948 75119966 CTCCTGGAAATGACTGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Sowahc ENSRNOG00000048831 ENSRNOT00000075800 1 1 1 60 20 28816182 28816201 GAAGTTACTAGTGGGAGCCT 59 28816224 28816242 CTTTCTCCCGCTGTAGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl1 ENSRNOG00000000549 ENSRNOT00000000660 2 1 1 60 20 41084346 41084367 GATCGCCGAGATTATCAAAGAG 59 41084386 41084406 ACGAGACAGGTAGTATTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1339 ENSRNOG00000059611 ENSRNOT00000081179 1 1 1 60 8 43919833 43919854 CACCGATACCTTTGTCTTAGAG 58 43919794 43919812 CATGAGAGTGACCAAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3galt4 ENSRNOG00000000471 ENSRNOT00000000550 1 1 1 60 20 5446787 5446806 GGGTGAACAAATACTGTCCT 58 5446827 5446847 ACATACACGTCATCATCTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl39 ENSRNOG00000048073 ENSRNOT00000046536 1 1 1 60 20 18492187 18492207 TTCAGAATCAAGCGATTCCTG 59 18492228 18492247 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomgnt2 ENSRNOG00000019492 ENSRNOT00000026363 3 1 1 60 8 130616820 130616838 CTGAAAGGCTGAACGTGAG 59 130616778 130616799 AAGACCAGAATGTATTCCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam206a ENSRNOG00000010532 ENSRNOT00000014053 2 1 1 80 5 73556310 73556329 TTCTAACAGAGCTTGCACCT 59 73556366 73556510 GACCTCTAATACAGCTAGATATGGT 59 NA Rattus norvegicus 81 LOC100910944 ENSRNOG00000019823 ENSRNOT00000026856 3 1 1 83 3 151688510 151688529 GAAGATGGGCTTTGTCATGG 59 151688575 151689611 ATTCCGATCCTGAGACAGG 59 NA Rattus norvegicus 81 AC108572.1 ENSRNOG00000060412 ENSRNOT00000030174 1 1 1 80 20 2044230 2044249 GGGATCTTAATACTTGGCCG 58 2044290 2044538 GACAGTGTGAGACTCATTCTC 58 NA Rattus norvegicus 81 Slc2a10 ENSRNOG00000025384 ENSRNOT00000030203 2 1 1 92 3 162192039 162192061 GCTTTCATCTACTTACTCGTTCC 59 162192113 162192543 AAAGCTCAGAGGGAACCTC 59 NA Rattus norvegicus 81 Olr1692 ENSRNOG00000032716 ENSRNOT00000040957 2 1 1 60 20 820476 820495 CTCCCTCCAACTTTAAACCC 58 820435 820453 CAGCTCCCTTCAAGGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfrp1 ENSRNOG00000017783 ENSRNOT00000024128 2 1 1 103 16 73410306 73410324 CCCGAGATGCTCAAATGTG 59 73405376 73410239 CACACTGTTGTACCTTGGG 58 NA Rattus norvegicus 81 AABR07052587.1 ENSRNOG00000031935 ENSRNOT00000011342 3 1 1 89 3 64191344 64191362 CCTCTACCCAAAGTTCGTG 58 64191415 64191872 ACATGGAGTAAGGATGCCT 58 NA Rattus norvegicus 81 Agpat5 ENSRNOG00000028623 ENSRNOT00000031291 1 1 1 80 16 75818180 75818199 GATGTCACAGTGGTTTACGA 58 75816790 75818138 GCAGAGAAACTCAGTCATGG 59 NA Rattus norvegicus 81 AABR07049040.1 ENSRNOG00000032203 ENSRNOT00000040968 1 1 1 86 5 101429375 101429394 CCAACCTGATGAAGGTTGAC 59 101429277 101429326 TAACCACGACACAACTCGA 59 NA Rattus norvegicus 81 Api5 ENSRNOG00000009689 ENSRNOT00000013914 3 1 1 80 3 83321735 83321753 AGGTCCTCCCTAATCTCAG 57 83320498 83321694 CTGCCAACAACTTTAATACCTC 58 NA Rattus norvegicus 81 Extl1 ENSRNOG00000016776 ENSRNOT00000022522 2 1 1 81 5 152577239 152577257 TACAGCAACATCAGCACCA 60 152576652 152577194 CAAAGGCAAAGTCCACCTC 59 NA Rattus norvegicus 81 Bpifb4 ENSRNOG00000034174 ENSRNOT00000044574 2 1 1 80 3 149432406 149432424 TTGGGAGTGTGCAATACAC 58 149432462 149433991 CAACTAGAGTATTAAGGTCCAACTC 59 NA Rattus norvegicus 81 Pomk ENSRNOG00000014628 ENSRNOT00000019630 2 1 1 131 16 70864637 70864655 CCGGGTTACTTCAGAATGG 58 70864747 70867296 CCATTCAGACAGAAAGACTCTC 59 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 2 2 3 80 3 150820763 150822901 ACGGTTTCATACTTTCTGTTCC 59 150820704 150820722 AGTGCTCAAACATCTCTGC 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 3 3 3 80 5 100496449 100502397 GTATCCAGAACACCCATAACC 58 100496389 100496410 GTCATGATAGTATGGTTGGCTG 59 NA Rattus norvegicus 81 Nr4a3 ENSRNOG00000005964 ENSRNOT00000008302 3 1 1 80 5 63793263 63804033 ACCTTGATTACTCCAGATACTGTC 60 63804072 63804090 GGTTGTAGAACTGCTGCAC 59 NA Rattus norvegicus 81 Pax7 ENSRNOG00000018739 ENSRNOT00000025488 2 1 1 80 5 158259432 158259450 CTACCCGGACATCTACACC 59 158256099 158259389 TTACTGAACCAGACCTGGAC 59 NA Rattus norvegicus 81 Defb29 ENSRNOG00000023195 ENSRNOT00000031683 1 1 1 80 3 148009122 148010117 TTGACAAGACCACAGGTGG 60 148009060 148009078 CCTGGTAAAGCTCACACGA 60 NA Rattus norvegicus 81 Plekha2 ENSRNOG00000038365 ENSRNOT00000022097 2 1 1 80 16 71764442 71764461 TTTCTTCAAGCCAATGACCA 58 71764503 71766945 CTTGGGTACAGTGATCTTGC 59 NA Rattus norvegicus 81 Agpat6 ENSRNOG00000018077 ENSRNOT00000024392 3 1 1 80 16 73639726 73639744 GGGCTACCTTGAGAATGGA 59 73639788 73641383 TTGCAATGATTCCGTTGGT 58 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 1 2 2 90 3 176042786 176042804 TCATTGCCTTTGTGGTCTG 58 176042857 176043908 AAGAGGAACGTAGTCCACTG 59 NA Rattus norvegicus 81 Ppdpf ENSRNOG00000012722 ENSRNOT00000017319 2 1 1 155 3 176691485 176691575 CTACTATCGGCGACGTCTG 60 176691824 176691842 AATGGGAGGGTGGATTTCC 59 NA Rattus norvegicus 81 Kcns1 ENSRNOG00000013681 ENSRNOT00000018364 1 1 1 256 3 160559509 160559738 CTATAGCCCTGCAAGGGAG 59 160559271 160559289 GATCGAAGTAGAACTCGCG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Adam9 ENSRNOG00000017231 ENSRNOT00000041330 2 1 1 80 16 71862137 71862155 ATTTCCAGCTTGGTTCCGA 60 71862198 71865108 TCCTACAAATCTTCCCAGCA 59 NA Rattus norvegicus 81 Ido2 ENSRNOG00000025365 ENSRNOT00000032116 1 1 1 80 16 72273405 72275216 CCACTGGAAATCGGTAACC 58 72275259 72275278 GACTGTCACCAGTATGAAGC 58 NA Rattus norvegicus 81 Sdc4 ENSRNOG00000014297 ENSRNOT00000019386 3 1 1 81 3 160877221 160877239 GTGTCCAACAAAGTGTCCA 58 160874510 160877176 CAATCAGAGCTGCCAAGAC 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095,ENSRNOT00000023352,ENSRNOT00000079096,ENSRNOT00000043170 2 4 4 80 16 81849256 81849274 GAAGAGGGAGGAGAATGGG 59 81849002 81849215 CCAACAGCAGTCATATTCAAGG 60 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 2 2 2 89 16 81113990 81118889 CACAGCAAGTGGTGATTGG 60 81118941 81118960 CAAAGTGAGTGTTGGGAGTG 59 NA Rattus norvegicus 81 Sulf2 ENSRNOG00000006052 ENSRNOT00000008478 1 1 1 80 3 162798822 162798841 AGTTTCAGTGGTACTGGTGG 60 162798670 162798779 CTCAAGGATGTAGCACCGA 59 NA Rattus norvegicus 81 Ift52 ENSRNOG00000007692 ENSRNOT00000066260 1 1 1 83 3 159393098 159393119 CACTTCTGAGAAGTTAATTGGG 57 159393163 159393385 AGGACTTCAAACTCTGCAG 57 NA Rattus norvegicus 81 Csmd1 ENSRNOG00000030719 ENSRNOT00000057897 1 1 1 80 16 78673484 78673506 CCAAACTACCCTCATAACTACAC 59 78673545 78677272 TCCAAACACCACAAATTCCT 58 NA Rattus norvegicus 81 Col4a1 ENSRNOG00000016281 ENSRNOT00000057386 3 1 1 80 16 83627907 83628959 TTCCTTTGTGATGCACACC 59 83629003 83629021 AACTCTTCCAGACAGGACC 59 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 3 2 2 82 3 176445752 176445770 GGTGGATTTGACCCATTCC 59 176444802 176445707 TATGCAGGCAAATATGCCTG 59 NA Rattus norvegicus 81 Coprs ENSRNOG00000000111 ENSRNOT00000000123 2 1 1 81 16 80831077 80831628 TCCTTACGATGCTGATGAC 57 80831673 80831691 CATATCTCCTTGTGGTGCA 57 NA Rattus norvegicus 81 Nr1h3 ENSRNOG00000013172 ENSRNOT00000018154 3 1 1 80 3 80011159 80011693 GAGCCTACAGAACTTCGTC 58 80011097 80011115 ACATACACTGCATAGCTCG 57 NA Rattus norvegicus 81 Insl3 ENSRNOG00000018757 ENSRNOT00000025347 2 1 1 126 16 20122375 20122393 CTTCCTCACCAGGCTTCTC 60 20122483 20122501 GCCCTACAATCCTTCAGTG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Smim18 ENSRNOG00000049689 ENSRNOT00000074543 3 1 1 60 16 62153918 62153939 ATATTTACTGTGGTGTCCTTGG 58 62153960 62153978 AGCAGCAGTCAAGTACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360051 ENSRNOG00000039432 ENSRNOT00000060424 2 1 1 122 15 31709588 31709609 GTGCATAACAATCTGTACTGGA 59 31709852 31709870 CTTCACTTGCTCACCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 1 3 3 80 5 171600011 171600032 ACACTCAGGGATCCTTTAAGTG 60 171600073 171600252 TCTCGATCCGGTAACACTG 59 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581 3 1 2 81 8 64184104 64185700 TAACACAAAGGAATGTCCCA 57 64184042 64184060 GTTCTGGTTACGACAGACC 58 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377 1 1 3 80 16 2114063 2117278 GAAATAATAAACCCTGGCCCT 58 2114003 2114021 GACCTGGTACATACAGCAC 58 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 1 2 2 80 X 31167572 31167592 ACGAGTAAGAATGAGATCCAG 57 31167632 31171997 ATACTTGAAAGGATCTGTCCC 57 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629 1 1 2 81 2 188330260 188330283 GAAGAAAGAGAAGTTGGAGTACAC 60 188330318 188337248 GAGATACTTTCCAACATGAATGGG 60 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 1 2 2 80 8 132716596 132716614 GTCTCTGCTGCTCATTGTG 59 132713937 132716557 CGAAGATCACTTTCAAATCTCCTC 60 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 1 2 2 80 5 139890711 139891663 TTTCCAGAAAGGCTGTAGGT 59 139890650 139890670 GCTCTGGAAATAGGTTCAGGT 60 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000059868 1 1 2 80 8 47339336 47393023 CTATCACGGACAGGTTTCC 58 47337897 47337918 GTTTCTTATCTGTTGGTGACTC 57 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 2 1 1 60 2 193429284 193429303 CTGGAATATGAGTTTGCCGA 58 193430060 193430078 CTTCATCCACAGTTGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453 3 1 2 83 X 1769920 1769938 ATACCCACGAGAGTATGGC 59 1768313 1769873 TCGTAGGAATCCTCTGCAC 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300 3 1 2 80 1 162030569 162034369 TATCAGTGGTACCTGGACCT 59 162034409 162034430 TTGTAAGTAGCGTTCAAATCCC 59 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777 3 1 2 98 X 29611076 29611095 ACATCTGCAACACCAATGAG 59 29608192 29609596 TCATGTAGATCAGCAGGGC 59 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 1 3 3 80 2 184901907 184903595 ACATACAGGACTCTGCTGG 59 184903639 184903657 CAGAAAGCCAAGAGAAGCC 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000018532 1 1 3 80 1 178409421 178409442 ATCCTTGTGATACTTATCTGGC 58 178409481 178430973 CTTAACTCCCACAAAGTACCA 58 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000091567 3 1 3 102 15 43022225 43022243 GATGGCGAAAGAGAAGCTG 59 43022309 43025271 GTGCTTGTCCTTCTCTTGC 59 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000024018 2 1 2 80 1 219174109 219174128 GATAGCAAGATGCTGATGGG 59 219174169 219176172 TACCTTAGGTCTGATGAGCAC 59 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 3 2 2 80 1 176929807 176929826 CCAGCAATCAAGAGTTTGAG 57 176929866 176930210 GTCGGATTGTGATCTTATTGTC 57 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 1 2 2 80 1 79649702 79649720 ATCTGCAGGAAATGGTGGA 59 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000068553 2 2 6 91 17 84171267 84171285 AGCCAACCTATAAGGCCAC 60 84169769 84171212 TTTGTGTTTGACCGCACTC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000082549,ENSRNOT00000068553 1 2 6 80 17 84210738 84210758 ATTACAACCCTCTGGGAAGTG 60 84205817 84210699 CTTTCTTGTACTTCACATCGCT 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000082549,ENSRNOT00000068553 2 2 6 80 17 84198131 84198150 CCATGCTTGACTTTGTTGAG 58 84193176 84198091 CTTTGTAAACTTTCTCGCTCTG 58 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857 3 1 2 95 X 13267520 13267539 GGCTGTTATGATCTGGTGAC 59 13262848 13267462 CATGCCAATCAACTGGGAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076 1 1 3 80 2 189423744 189424629 GAAAGAAGCAAACAGCTAGAG 57 189424670 189424689 ATACTTGTCCAGCTCATCCT 58 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 2 2 2 80 3 6492367 6493266 CCTAACCCAGATGAATATTACCCA 60 6493300 6493323 GTCTTCAGGGTCTTCATAATATGG 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346 1 1 2 80 1 32228087 32228105 TTTCTTCTCCCTGTCCCTG 59 32228147 32229693 TCCTTCTCACAATTGTTCCTG 58 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000064153 2 1 2 168 1 86969414 86969432 AACAAGGAGAAGACAGGCC 60 86971188 86971289 CTTCCAGCTCCTTCCATCC 60 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000035888 2 1 2 80 15 45901348 45910859 GTGTCCAAGATGAGCTAAAGG 59 45901288 45901307 CACCAGTCATCATGAGACAG 58 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 3 2 2 80 X 22410691 22410951 CTAGGAAAGGAAAGTAGAGCCA 59 22410632 22410652 GTCTTCAACGGCATAATGGTC 60 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 3 2 2 82 1 243386254 243386916 ACCGGTCTCTATGTATGTCC 58 243386959 243386979 CCGTTCGAATCTTTATTCCCA 59 NA InUTR Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496 2 1 2 80 1 243386953 243386974 AAGCGATGGGAATAAAGATTCG 59 243387015 243388125 GAAGTTGTCTCATACCCGC 58 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370 3 1 2 94 1 167522963 167524814 CTTGTCCATGCAGTATGCTG 59 167524871 167524889 AGAGGGACTGATCATCCGA 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000079631 2 1 2 108 1 89542472 89543870 CTGCGTCTTACATATGCGTC 59 89539124 89539142 TCTGTCTTGTCCAACACCA 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 2 2 3 80 8 90934445 90934464 CAAGAAGGAAAGTACAGCGA 58 90932338 90934405 TCTTTCCCATTCACATTCAGAC 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000015578 2 1 5 80 7 115787301 115787319 CCAGACTTGTATCCTGTGG 57 115790063 115792639 CCATTCCATAACCTAGGGC 57 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248 1 1 2 80 2 148765595 148774434 TCAGATTTGTGTATCCGGGT 59 148774477 148774495 ATGCGGATGTCTGGATACC 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 2 3 5 80 17 39411785 39413113 CTTCCTTCTTTGGCACACTC 59 39413154 39413174 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000018843 3 1 2 82 18 31820109 31825305 ATGAAGACTCCAGCACACC 60 31820045 31820063 CGTGAAGGAGAGTTCCGAG 60 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 2 1 1 110 6 6180545 6180565 AGCTGTATCTTATCTGGACCA 58 6180639 6180657 ATCTCTGTGACAGTGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438 1 1 3 82 X 37970202 37970220 TTCATCAAGGAGCTGTCAG 57 37958677 37970159 GTTTCTCTTAAGCTTGACTTGG 58 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000065211 2 1 2 96 2 187282003 187282025 TCTGATGTCTCCCAGTCCT 59 187282085 187282103 CATTGCCCTTCTTGTCACC 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000088676 2 1 2 80 1 80172751 80172792 CTACCTCAGATGAAGTCATCCT 59 80172692 80172710 GTCGGAGTCATCACTGGAG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386 2 3 10 81 2 231232011 231232933 CTGTCAGAGGTGACTTTGTC 58 231231949 231231967 CTCTACGGCCTTCTACTGG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000037255 2 1 10 80 2 231316675 231316693 GTATGGAAGCCTGGATGTG 58 231314509 231316632 GGAGTATAGCCATTCTTCCC 57 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 1 1 1 60 5 140023850 140023868 TGCCTTATGGAAACGAAGC 59 140020247 140020266 GAGTGTGATCACAAACACCA 59 NA DesignNoJunction Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 3 4 7 83 1 215610468 215610577 ACCTGAAGAGTGTGATGCTC 60 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 2 4 7 83 1 215610468 215610576 ACCTGAAGAGTGTGATGCT 59 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 3 2 2 80 15 42862345 42862363 TGCCAGAAGACTTCATGGA 59 42860340 42862301 TGTAGTCATTCCGGAGCTG 59 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 2 2 2 88 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472115 100472134 ATGACGGAGGATTTGTACCC 60 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878 1 1 4 80 9 117651350 117657210 CCTGAGGAGACCAAAGAAGAG 60 117657252 117657270 AGACTCAAGGAATGGCGAG 60 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 2 2 2 80 9 9724316 9724418 TCCATCACAGCCAGATTCC 60 9724461 9724480 CTTATCCTCATCCTGGACCC 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 3 2 2 85 15 18349558 18351254 TGACATGTACTCTGGAGAACC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000084258 1 1 2 80 6 83426443 83426463 CATCTCAAAGAGCACATACCA 58 83431893 83432125 ATGGCAGAATCTGTGTTTCC 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600 1 1 2 80 6 83426449 83426467 AAAGAGCACATACCAAGCC 58 83431900 83438230 ATATGGACTCCAGCCTCTG 58 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000067325 1 1 2 81 8 21925199 21925219 GATCTCCTACTGGAGAGCC 58 21925136 21925154 ATATGGTCCCTGAGGATGG 58 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000067325 2 1 2 81 8 21925198 21925218 ATCTCCTACTGGAGAGCCA 59 21925135 21925154 GATATGGTCCCTGAGGATGG 59 NA Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 2 2 2 80 9 119858840 119858861 CTATGAGAAGTTCATGACTGGA 57 119857203 119858802 TTATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000078175 1 1 2 82 4 114879993 114880012 AGACTCCTGATTCTTCTGCT 58 114880219 114884655 AGTTGTGGTCAGTTTGCTG 59 NA Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 2 1 1 82 8 38154249 38154268 TATCTTGCTGCTCCTACTGG 59 38153321 38153339 AATTGAGGTTGCCACACTC 58 NA DesignNoJunction Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 3 1 1 80 6 24080568 24080586 CTCTACTCGGTTCACAGGC 60 24082908 24082928 TCTTGAACTTCACTGTACTGC 58 NA DesignNoJunction Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 3 2 3 181 10 77755423 77763104 TTCCAGCGTTTCATGAACC 59 77765298 77765316 ATCCCGTAGATCCATGCTG 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 3 2 2 80 15 41316184 41316202 TGGCATTCAAGGTCCTACC 59 41315816 41316142 TTGCTTTACAGGACAAGTGAC 59 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000059494 3 1 2 85 17 43464379 43464510 TCAAGAGGTACACTCGCTG 59 43464557 43464577 AATATGAAACCACAATGGCCC 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 1 2 2 95 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312685 36312703 CTGTTCTTTAGCAGCCCAC 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 2 4 4 81 15 51927600 51936380 CCTTCAAACAAGAATGTCGGA 59 51927539 51927557 GCAAGAGGAAGACAGTCGA 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 2 3 3 80 15 45503370 45505682 GATGGGAAGGAAGTATGTACTC 58 45503311 45503329 TTGTTGCTGATGGTCTGTG 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072009 2 1 3 88 9 10353200 10359276 TCTCTAACGCATTCAGTCCC 60 10353131 10353149 TCTGGTGATGCAGAAGTGG 60 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072009 3 1 3 89 9 10353200 10359275 CTCTAACGCATTCAGTCCC 58 10353129 10353148 TTTCTGGTGATGCAGAAGTG 59 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000084304 2 1 2 82 17 16015793 16015811 AAGAGCAAATTGAAGGCGG 59 16015857 16016874 GACAAATGACCTGTGCTGG 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604 1 1 2 80 3 44081227 44081245 AAGGGAGATATCGCCAGGA 60 44068095 44081186 GTCCAAATGAGAGTCTTTCCTG 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000074303 1 1 6 80 1 282700303 282700520 GCACAAATGATGCTTCCTC 57 282700563 282700582 TAGGGTCTGGGAATCATCAG 58 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000082254 2 1 6 85 1 282672599 282681972 TTCTTCAGCACTGGAGATGAG 60 282682018 282682037 ATATTCTGCTGGACCCATCG 60 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000068198 2 2 3 114 2 231063299 231074199 GATAAACAACAAAGCCAACGTG 59 231076466 231078911 CTCAGTTGACTCCTTGTTTCC 59 NA Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 3 2 2 88 1 213977334 213977600 ATGTATGCCAGCATGTCTG 58 213976471 213976489 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 2 1 2 236 5 116963696 116963714 CAAGGAAAGAAATGGTGCG 58 116965070 116965090 TGTAGACTTTACTAGCCATCG 57 NA DesignNoJunction Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219 2 1 2 84 19 30880259 30880279 AATGAACGGCTTTCAGCAG 59 30880327 30880345 GTTATAGAGGCCGGACTCG 60 NA Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 2 2 2 81 2 52318872 52318890 GGAACTGCTGAATGCTCTG 59 52318934 52320386 TGACCCTGTCAACTTTAGCA 59 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000078619 1 1 3 97 1 220854873 220854891 CCCACAGGATTCCGAAGAG 60 220855181 220857632 GACACTCATCTATGTCCCGG 60 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202 3 1 2 81 2 61409225 61411955 TCGAGCAGAGTTGAATCCC 60 61409162 61409182 GGAATCATGCTCTGCTTTGAG 60 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310 2 1 3 86 17 23074659 23074677 TTGAAGAATGGCTTGGTGG 58 23074725 23136871 CATAAGATTCTCAGACACGCT 58 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 1 2 2 80 1 100856291 100856309 TAGATGGGACCCTCATCAC 58 100856352 100856456 TCTCTGGGTACAGAATCCTC 58 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 3 2 2 80 1 100856290 100856309 CTAGATGGGACCCTCATCAC 59 100856351 100856455 CTCTGGGTACAGAATCCTCC 59 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 3 2 2 80 10 105137629 105137649 TGAAGATCGACAAAGTGAGGA 59 105131424 105137588 TTTCTTCACTTTCAGCCTGC 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000076359 3 1 3 89 X 62690784 62693452 AGTATGAAGTTGAGGACCTCAC 60 62690716 62690734 AGTCATCATCCTGACGTGC 60 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676 1 1 2 116 9 66518749 66518767 GTAGAAGAGGAGCCGACTG 59 66518846 66519558 CTCTGGACTAGGAACTGCTG 60 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742 3 1 4 82 19 757166 757536 ACAAGAACCTCCGAATCCC 59 757581 757600 CTTGGTACACTAGCTGGTCC 60 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000083153 3 1 2 87 1 189619548 189621579 GTGAGAGTAACAGATGAAGTTTCC 60 189621625 189621643 TGTGCAGAATTCTCCGAGG 60 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 1 2 2 80 17 42736622 42736643 TCTCTTTGACCATGCTATTGTC 59 42726719 42736582 AATGCATACCCAAACTCCTC 58 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000088322 1 1 2 80 10 29034068 29034088 AGATGACCAGAGGACTGGA 59 29034132 29034151 CTTCATCAACTTCTGCAGGG 59 NA Rattus norvegicus 81 Mir3597-3 ENSRNOG00000035580 ENSRNOT00000053703 1 1 1 60 1 141229435 141229455 CACGCAGAAGTTGTTAGAGTC 59 141229395 141229413 CACAGAGCCGTCATAAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000085832 2 1 2 147 10 34524900 34534714 GGGTACATGGCTACTTCCC 60 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000068531 3 1 2 81 6 28678398 28679833 GTACAGTGAACCTGAAAGGAG 58 28678208 28678226 GCATTGGTTCTTATGGCCT 58 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 1 2 2 80 17 30699845 30703886 CCTCGAAGAAGAGATAGGAGTC 59 30699786 30699804 CCTTCTCCTATGACCACCC 59 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857 3 1 2 80 1 218435363 218435381 TACTTCCGGAACCTTCCAG 59 218433532 218435319 AAACAAGCTTCCATCAGGG 58 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 2 2 4 92 20 2058450 2058655 CTATAACCAGAGCGATAAAGTCTC 59 2058706 2058724 CTATAGTGCGCTTGGAGGA 59 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144 3 1 2 84 2 118932322 118932342 GATAGCAACCGAGGATCTG 58 118932390 118932408 TTTCATATGCCTCCGAGAC 57 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 1 2 2 80 3 138387922 138388656 TTACAGTTCACACCAAGACCA 60 138387862 138387882 ACACAAAGTCTTCATGTTGCC 60 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 3 2 2 93 3 138387919 138389069 GTTCACACCAAGACCACAC 59 138387844 138387862 TAAGAGTGTCATGCAGCCA 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000042432 2 1 2 96 20 10364053 10364710 AGATCCAATCACGAGACCAG 59 10362780 10362798 ACACCAAACACCATCAGCT 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000077991 2 3 9 108 20 2083571 2088292 CCAAGTTAAGATTGGCTTGGG 60 2079779 2079799 GGGAGTTGTAATTCTGGTCAC 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000041631 3 1 4 81 15 34795021 34795263 CATGTTACTGAAGCTTGAAGAG 58 34795303 34795323 GATAAAGTCAGAGGACTGAGG 57 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000076751 1 1 4 81 1 267625476 267627836 AAAGCATCAGGTTCCTGTC 58 267627881 267627899 GTCATCCAGGTACTCACAC 57 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000084388 2 1 2 80 4 115181589 115181609 CTGGTGTTGAACATCAGTGAG 59 115181171 115181548 CATGAAGGTGTTTACCTGCC 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000090021 3 2 3 80 17 47339828 47339847 GTGTGGAACGTTGGAAAGAG 60 47339885 47340611 GTACACATAAACTGTCTGGATGAG 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000019040 1 1 4 87 17 27506855 27506876 GTAGAAATGGGTACCTCAAGTC 58 27506921 27510667 TCGGAGAAGCTTTATTGATCTG 58 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000019040 2 1 4 91 17 27506851 27506871 GAAGGTAGAAATGGGTACCTC 58 27506921 27510667 TCGGAGAAGCTTTATTGATCTG 58 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 2 2 2 72 2 61692290 61692310 GAAGGAGAACAACCAAATCTG 57 61691854 61691872 AGATCCTGAGAGGGATGAC 58 NA DesignNoJunction Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000046456 3 1 2 81 6 137946271 137946289 CCCTGTCATCAACAATGGC 59 137946334 137948807 GTTTGCCAGACCATCTACC 58 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642 2 1 2 107 20 12075254 12075272 TGTACATCAGCACCTCACC 59 12075343 12076499 TATCAGCCGGTTCTGTCAG 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661 2 1 5 119 12 52400302 52400527 AGAAGTTCGACAAGGTGGT 59 52400610 52400628 ATCAAAGTTGGGCCAAACC 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000081447 2 3 5 80 12 52398988 52399108 TTCTCAAAGGGCAACATTGC 60 52399150 52399169 ACAGTATGGGTCAGAGTCCT 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503 2 1 4 110 5 115076523 115203045 TTAACTGCATTGCACAGGG 59 115076431 115076450 GAAAGGCAGGAAAGAGTCTC 58 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435 3 1 2 80 10 15630017 15630035 TGTTGATGACCAGGATGGT 59 15633594 15637125 ATAGCATCCGAGAACCCTG 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679 1 1 5 80 13 47415479 47422663 GTGACAAGCCAACTGAAGTG 60 47415418 47415437 ATCAGGAGAGCAAAGTGAGG 60 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410 3 1 2 100 1 37738001 37740008 TGTCCTTTCTATAAGGGCCC 59 37737920 37737940 TAAAGATGGAGATCCATGGGC 60 NA Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 2 2 2 82 4 157355825 157355958 TACACCACCAATAAGGTGCA 59 157355762 157355780 ACGAAGTTCCCTGATGGTG 60 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889 3 1 2 86 10 40920162 40953422 GTATTCTTCAGCCTTGCTGC 60 40920095 40920114 CTTATCCAGGAAGTCCGAGG 59 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 2 2 2 80 5 152375722 152375740 CAGCTCATCAGGGAGTCTC 59 152371302 152375679 ACCTTTAACCCTTTCCTCCT 58 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448 2 2 4 80 7 64765031 64765050 TACTAGTCCACGAGGAACCA 60 64765090 64775484 GTGCTAGAAGCTAAAGACAGTG 59 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 1 2 2 80 5 167142238 167147196 TCAAGAGAAGACAGGGAAGC 60 167147239 167147257 CCATACTGGAAGGAGGAGC 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 3 2 2 80 8 70722986 70726653 CACCTGAACAAGACTTCTCTG 59 70726693 70726713 GTGAGGACTATAAATGAGGGC 58 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000078362 1 1 3 80 20 2095569 2096767 TCATGGAATGGGAGAATCGG 60 2096810 2096828 TGTCACTTGACCACTCCAC 60 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000055127 1 1 2 151 3 163808763 163811813 CCACAGAGGTCCTATAGATGG 59 163808632 163808651 TGCCCATAGCCCTAAATCTC 59 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 1 1 1 61 5 164919055 164919076 CAACAAATGTTTCGATGACTGC 60 164913992 164914010 GGTGGAATTTGGCATAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000024414 3 1 3 98 4 118500964 118500982 GCTTGGCTTCTTTCGACAG 60 118496272 118500902 TCATCACCACTTGCTCCTG 60 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 3 2 2 66 6 51017103 51017121 AAACTACCATGGTGAGCCA 59 51015547 51015566 TTGGAGCAGTTGGTATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 2 2 2 83 9 67781918 67781936 TGTGCACGACCCTAATAGC 60 67781980 67784180 TATGAGGTCATACCTGCAAGTC 60 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000091060 2 1 2 80 9 67774217 67779929 TTCAATAACGGAGGAGAACTC 58 67779969 67779989 ACAAGAAATCTGTACACCTCC 58 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502 3 2 3 85 2 264992478 264992496 AGAAGCCCATCCAGAAACC 60 264989927 264992432 CTGACTGGAAATCTTCATCACC 59 NA Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 1 2 2 80 3 82743621 82743639 TTTGAGTGCAAAGAACCCG 59 82743460 82743577 CATCCTTTGCATTCCCAGG 59 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833 1 1 2 80 7 70613194 70613212 AGAGGAATCAGTCTCCTGC 59 70613256 70613510 CGGTACAGCTTTGTTCCAG 59 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000089251 3 1 2 115 5 76728268 76753017 TATAGCAGTCGGTTTAAAGCG 59 76717954 76728194 TGTCATTCCCATTAGCATACAC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000015742 2 1 2 120 4 148258391 148268215 AGAGAATAGGAGAAAGTACTCACC 59 148268294 148268312 TCAAAGCTAGTGGCCAGTC 60 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157 1 1 2 112 9 14568037 14568055 CAACAGATTGCTGTCCAGG 59 14568131 14568863 ATGGTGATCATGCCTTGCT 60 NA Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 2 2 2 80 17 54375303 54380670 TAGTACAAGCTGGTTTGGGA 59 54380713 54380731 GATGCCATTTCAATCGCTG 58 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000050868 1 1 2 158 2 188664200 188664218 TACTTGGTGCCAGCTACTG 59 188663136 188663714 CATTAGCTTGCTTAGTGCCTG 60 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000050868 3 1 2 160 2 188664200 188664218 TACTTGGTGCCAGCTACTG 59 188663134 188663712 GACATTAGCTTGCTTAGTGCC 60 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000060020 1 1 2 136 12 19581287 19581305 TTCACTGGATAGACTGCCC 59 19580693 19580844 CTATTCAGCACCTTGAGGAC 58 NA InUTR Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655 3 1 4 82 14 22520088 22520109 CCCAACATTACCAAATGTTGAC 59 22520148 22521151 CAAAGTCTTCTATATCCTTGGGC 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064395 3 3 4 80 3 111728694 111728714 ACCATAAAGGGCAAACTAACC 59 111728756 111729340 CTCTTCTCGGATCACAGGA 58 NA Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 2 1 1 64 6 107555754 107555775 GGAGTACTTTGAAGAAGCTGTG 59 107556959 107556977 CAATTCCTGGACCCTTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005446 2 1 2 80 18 41363698 41363716 TTGAGCAAGACATAGAGCG 58 41361008 41361145 TTGAAATGTCATTCAGTGCC 57 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 2 2 2 80 2 237801378 237801517 ATTGCTTGAAGACGACCAG 58 237801561 237801579 ATTAAAGGCAGGGAAGCAG 58 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 3 2 2 80 3 47475067 47475086 CATATGAAGCCTTCCGACAG 59 47475125 47488366 GTTCATAGTTCTCAGTCTTCTGC 59 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349 2 1 2 140 7 134495688 134495706 AGTGTCCTTGGAGGAAGGA 60 134486856 134495584 GAGACCTCCTTACACCTGC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110 2 1 3 80 20 2206411 2208002 AAGGAGTAGCCAAGACACC 59 2205935 2205953 ATGTGAGGGATGGCTTTCC 60 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 2 2 3 109 2 113833140 113833158 TAGTGCAGGACACAGAGAC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508 2 1 3 168 15 51779926 51799357 TGGATTCCATTTAAGATCGGG 58 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071 3 1 2 119 10 64751730 64755178 TCAACTTCCAGACTCAGGG 59 64756351 64756369 CCATAGGAGGGATTCCAGG 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089 2 1 4 149 5 116705257 116705276 CAACCACATCAACAGAAGGC 60 116720811 116721036 CCCAATACCATAACTGTGTCTG 59 NA Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 2 2 2 80 16 758274 758292 ATGACACGGTAACCATCCG 60 758333 758434 GAAGGACATCAATGACCATCTG 59 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 3 2 2 90 20 12658978 12658996 GAGGCTGAAACCTTATGGG 58 12659049 12660372 ACATCGGTAGTACCTGTCTC 58 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167 3 1 2 80 1 101625002 101625311 ATCTCCAAAGAAGGAATCCC 57 101625351 101625372 TACAGGTGATATGTCAAGTTCC 58 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 1 2 2 80 8 114935963 114935982 CCAGGACATCATGAGAAAGC 59 114935593 114935921 AAAGTGGAAACGGACTTTGG 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000035976 1 1 5 99 5 101906855 101906873 GAATGACTTCACCCTGCAG 59 101906936 101909703 TACATTCCACTGGCATGCT 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000073253 1 2 5 93 5 101935785 102010610 TACAATCAATGGGCTCCAG 57 102010667 102010685 TGCAATGGAAGAAAGTCCC 58 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 2 1 1 144 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565086 105565104 CCTTCTGACCTTTAGCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000005731 3 1 2 106 6 36091061 36091079 AGAATGAGCCTGGGATGAG 59 36091146 36092246 TATTTCTTGGGATCCCTGAGTG 60 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 3 2 2 80 8 68444763 68454430 TATCAATAACAGCCTCCTTTCC 58 68444704 68444723 TCTGTTTCTGTTGAGACTCC 57 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 3 3 8 80 13 68709935 68710071 ACTGCTCAGTTGAAAGCTG 58 68710113 68710133 CTTTACTCGGTCCATCTTCAG 58 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000088070 3 1 2 121 4 136676783 136678205 GTATTCTCATCCTCAGGTGAGAG 60 136678285 136678304 CCACTTGCAGTACAACTCAG 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 3 4 4 89 1 24190586 24190756 GCTTTCATGAAACAGAGAAGGA 59 24190133 24190537 TTGAACTTCAGGGTGTTTGC 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321 3 1 2 80 8 49258217 49264835 TGAAACAGCAGTCTGATGAG 58 49258156 49258174 AGTCAAACTCATCCAGGCT 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313 2 1 4 83 2 8939052 8939579 ATGCAGTGAGTTGGGACTC 60 8938987 8939007 GTATAGCTGGCCTTCATAGGG 60 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 3 2 4 80 2 9465208 9465228 GGAAATATCACCTTTCCACCC 59 9463421 9465168 ATCATTCTCTGGTACCTCGTC 59 NA Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 1 2 2 80 1 219363601 219364104 AGATGCTGAAGGTGGAGAG 59 219363539 219363558 GTACTGCCTTTGCTTTCTCC 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 1 3 3 83 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 2 2 2 94 1 101379417 101379562 CTAGAGTGAACTATGACACAACAG 59 101375211 101375231 GCGTTTACTGTAGACCATGTG 59 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 1 2 2 60 5 90339018 90339036 CTGAAACATGGCTCCAAGG 59 90348628 90348647 CATCCACTTCAGACAATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000005905 1 1 2 80 6 48779317 48779341 TTAATAACGGCACAGCATAAGG 59 48779668 48779686 CCCTGGAGTTGGACATCTG 60 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000084632 1 1 5 109 X 63803916 63803934 CTTGGATGCTCTGGATGCT 60 63803819 63803843 ACTCAATGTCATCCCAAGGG 60 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000084632 2 1 5 116 X 63803924 63803942 GATGAAGCCTTGGATGCTC 59 63803820 63803843 CTCAATGTCATCCCAAGGG 58 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927 1 1 2 80 12 18119742 18139325 TGGACATGGGATTGGTGTC 60 18119680 18119698 TCTGAACAGCATCCAGCTC 60 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036205 3 1 2 133 10 11824668 11824687 CTGATATCTGCTCCTGGGAG 59 11824783 11824806 TTTCTCCTTTGCCCTCCTG 60 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189 2 1 2 80 10 11831900 11831919 TGATCAAGGATGATGGTGTC 57 11831962 11834748 TCTTCTGTAGCTGTAGCGT 58 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962 1 1 5 80 13 77940672 77942278 TAATGGCAATCGAAGGCAG 58 77942322 77942340 ATCACGCAACATTCTCCAG 58 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000080846 1 1 2 80 20 18932171 18932189 AGACCAGGATCTGAAGGAG 58 18932231 18935491 GAGTCACAAACTGAAATTGCC 58 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000039354 3 1 2 150 19 25834681 25834700 ACCTCCATCATTCAGCAGTC 60 25826953 25834568 CCTGTCGTTGTGAATGCTG 60 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073 3 1 2 83 14 81380639 81383170 AGACTAAGTGGACTAAAGAGGA 58 81380577 81380596 TTGGGTTAGTGTTCAATGGA 57 NA Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 3 1 1 89 12 2544577 2544595 GGACAGCCATGTGTTTGTG 60 2544425 2544443 GAAGAAGGCGTTACTGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600 2 1 2 80 15 85946575 85946596 GTGGAAGAAAGCTATACACCAG 59 85943238 85946535 TCTCTTCTCGCTTCTTCCAG 59 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299,ENSRNOT00000012095 1 3 3 186 13 52629405 52631326 GAGGAAATCTAAGATCACTGCC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000080714 1 1 2 102 10 104378471 104378788 GAACGTACAGGTCTGTCGT 60 104378854 104378872 GAACAGATCCCGCTTTAGC 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 1 3 3 80 20 20588827 20588935 GGATCTTCAGAGCTCTGGG 59 20588976 20588997 GGAAAGTGTTCTTGTAGTCCTG 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424 3 1 2 92 15 84477327 84477345 TCTACACAGCTGTACGGTC 59 84447046 84477272 AGAACTGAACTTTGCCATGG 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000088037 3 1 6 110 15 36972745 36972763 GAACTATACCTGGCCCACC 60 36950455 36972672 ATGTTGTAACAACCACTGCG 60 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000037848 2 1 3 80 4 125718430 125724885 AAACCGACTTCCAGATTACCA 60 125718370 125718390 CCACCCAGAATCCTAAATCCA 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 1 4 5 82 2 30666646 30667396 CTCGGGAAGTCTGATCACC 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324 2 1 2 86 3 162483787 162483805 AGGTATGACAAGCAGCCTG 60 162482280 162483737 CCGGGAATGGTACTTCTGG 60 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 1 3 3 80 5 117605612 117606738 AGACTGGAGGGATTCTATGG 58 117605551 117605572 ACACTTGTCTACAGGATTAGAG 57 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 2 2 2 80 4 181079315 181079336 GAAGATGTTCTACAGCTTTCAG 57 181079376 181080129 AATGTCATCATGTCACCTCC 58 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000081029 2 1 3 81 8 107524064 107525333 CATATACAAAGGCAGTGTGGG 59 107525376 107525394 TATAGGTTGGTGAGACGCC 59 NA Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 1 1 1 65 12 12330327 12330345 TATCCTGCCAACTCCATCG 59 12322625 12322643 GTATTCCAGGACACCAACC 58 NA DesignNoJunction Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135,ENSRNOT00000029340 1 2 3 80 2 177872893 177873558 GAGAAGAGCTGGATTCCTG 57 177872831 177872850 ACAGTATTTCTGCTTTCCCA 57 NA Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 1 2 2 80 13 98056611 98056631 CTTAGCAACCTCAGTACAGTC 58 98055881 98056570 GTTCAAGTCCACAAGTCCTC 59 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975 2 1 2 82 8 48413176 48413194 TGTGGGAGAAGAACAAGGG 59 48413238 48426007 GGCACTCTTTGAATTCATGGT 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897 2 1 2 80 10 65768693 65768712 GACCTCAAGAATGGTTCCCT 60 65768751 65768825 TAGCTCATAGCAATACTCACCTC 60 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 1 7 7 80 15 5507392 5507412 GACCAACTGGATAAGTGATGC 59 5464082 5507350 TGGAAGTTTCTGATGCGGT 60 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000063883 2 1 3 100 11 71035930 71038449 CACAATCAGCACAAAGTATCAC 58 71034124 71034144 CTATCATCAGTGTGCTGAGAC 58 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989 3 1 3 81 11 71027571 71029096 GCAGAAGCTAGTAAAGGTCG 59 71027509 71027527 GCTGTCTTGCTATGGAGTC 58 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951,ENSRNOT00000066474 2 2 3 80 10 75090428 75090446 TTCTCCTTCCTCACTGGAC 58 75090490 75091366 ATTGGGTGGGATCTTGAGG 59 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 1 2 2 87 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529442 18529460 GTTCCTGTAGTTTCTGCCG 59 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528 3 1 3 81 3 8628979 8628997 GTCTGCGTTTCTTACGCAC 60 8629040 8629937 AATGCAAGAAGCATACAGACC 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000083774 2 1 4 100 3 3168427 3178668 CTGACAGAAACCTTACCACAC 59 3178729 3178748 CATCTGGACCTCTAAGTCCC 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000012622 3 1 3 106 4 99808014 99808034 CCAGCCTTACAGATACTACGT 59 99804389 99807263 ATAGAGCTACCTGCTCGTG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000025680 3 1 2 82 1 212715879 212804570 TTGTATGCACAGGTCACGT 60 212804616 212804634 AAGTCCTCGAAGAACCTCC 59 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383 3 1 2 80 15 4894722 4894744 CTGATGAGTATCTTCCTGAACAG 59 4894539 4894683 TCACTTTCTTCCTGTTGGAC 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496 2 1 2 97 10 31340860 31340878 GGATCTGTACAACGACAGC 58 31339588 31340799 AAAGCACAGGTTCACTTGC 59 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 2 2 2 89 10 104455968 104455988 CTGCTGAAACTGAAAGAACTC 58 104456039 104456439 CATCAGGACAGTAGCTGTG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 3 1 2 80 13 96356703 96379665 ATTTCATTGCTGAGGTAGAGGA 59 96379705 96379724 GTACTGTGGTCATCACTGGA 59 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 3 2 2 81 7 24660068 24668117 GGTGATCATGAATCAGGCA 58 24653188 24660025 ATCTTTCATTGACCCTTCTGG 58 NA InUTR Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000031173 1 1 2 60 1 84640189 84640208 CTACAGTCACCTCGTCACAG 60 84640234 84640253 GTGTATGTGACACATCACCC 59 NA DesignNoJunction Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396 2 1 2 101 6 58523802 58542042 GCATATGATTCAGGCTGCA 58 58545001 58545019 TGGCTCTTGCTTAATGTCC 58 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000083561 1 1 2 80 13 91736600 91737016 TAGTGCTCATATCTCTGGGTG 59 91735316 91735334 TTCTAATCCACGGTGGGTC 59 NA Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 3 2 2 80 18 51845895 51859194 GGACACTAGTGTCATTTAGGT 57 51845835 51845854 GAATGAGGAGAATCACCCTC 58 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000033633 3 1 2 80 1 75468710 75470736 GGATCCATTTGAGACCATCAG 59 75470776 75470796 TGATCTTCACTCACTTCAGGA 59 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000088917 1 1 3 87 6 106072696 106084826 AGCAAGGGCTGAACTATCAG 60 106084870 106084894 GACTCATTATTGTACATCTCCTCCT 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040 3 1 6 80 5 48034347 48034842 AATTCACGGGATTCTATCTTGG 58 48034882 48034901 CATGTAGGATCGGATTTCGG 58 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143,ENSRNOT00000086745 3 3 3 80 3 93693177 93693195 AAAGCAACTGTGAAGGCTC 59 93690288 93693134 TCTCTTCTTCCGATGACTGC 60 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 2 2 2 80 13 75118023 75118728 CACTGACCAGAAGACCCTG 60 75118769 75118790 GTGCCATAAGATACTGGTAGGA 59 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000006924 3 1 2 94 13 75126749 75126767 TTTCCAAGAGCATGTCCAC 58 75126825 75142883 ATCATTGACCTTCTCCAGC 57 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254 1 1 2 80 1 48274077 48281579 CATCGTCACTGAGTTTAACCT 58 48281621 48281639 AAGAAGCCCAAGTTCACAC 58 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690 3 1 2 82 10 65673458 65675863 CCTCTGAGGTCTGCATAGAG 59 65673395 65673413 GTGTTCTACAGCAATGGCC 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000090765 1 1 4 81 1 262905665 262913319 CTTGGAAGACAGCGTAGAG 58 262913364 262913382 CTGTTCCTGGAGTTGTTCC 58 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278 2 1 4 93 1 262911975 262911993 TTAAGGCCTCAACTCCGAG 59 262912726 262913324 TCATCCTCTACGCTGTCTG 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857,ENSRNOT00000065893 1 3 3 98 12 52360966 52361846 GACATTCCAACACTTCAAACTC 58 52362004 52362022 TCCGGTATGGATCAGACAC 59 NA Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 2 2 2 83 4 180131575 180132030 ACATAGAGACAGAGGCACC 59 180132077 180132095 GGATACGGAGGTTACTGGG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000086441 3 1 4 81 1 50933160 50933178 CGGTGGCTACTAAAGTTCG 58 50933223 50933512 CCCAAATTGACTCGGTCTG 59 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 2 2 2 127 20 7296595 7298837 GAATATCACAGCCGACCCT 59 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 3 2 2 81 X 115726953 115726971 CGAAGAACTTGACCCACAG 59 115679345 115726908 AGCGACAAACTCTTTCTGG 58 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000070981 3 1 2 80 10 13411008 13415183 CTGAGATCTGTTCTTCCAGC 58 13415226 13415244 CTCACCTTCTAAGGCATCC 57 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 2 3 3 90 7 99155552 99155724 GGAATATGGTGTGATCTTTGC 57 99155775 99155794 CTTTCCCATCCCAAAGTCTC 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000042594 1 1 3 80 6 107295443 107315143 AAAGATTGAAAGCTACGGGA 57 107295382 107295402 TTTCATCCACAACTCTGAGTC 58 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000085322 1 1 4 80 15 8915969 8915990 ATACAGACACCAGTTCTACCTC 59 8914483 8915931 TTCTAAAGAAACCCTCAGGGTC 60 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 3 2 2 81 7 143137696 143137715 TCAAGGCTCAGTACGATGAC 60 143137400 143137655 TTTATTTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 1 2 2 80 9 10973765 10974004 GACAACCCAGATGTGAGGA 59 10973703 10973723 CTTCTGAAGGATCTGAGAGGT 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000016042 1 1 3 80 X 65099310 65099328 GGATTGTTGAACTTCGCCA 59 65098014 65099267 GGACAAAGTAGCAACCTCTG 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000077952 1 1 2 85 1 81244833 81245479 ACATAGCTGCCTGTTATCGA 59 81245527 81245545 ATGTCCTTGAGCTCAGTCC 59 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 3 1 1 123 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104884864 104884882 AAACTTCCGCTTTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255 1 1 2 83 15 4883083 4883968 CAACTGCAAAGATGAAACAGAG 59 4884007 4884030 CTGTCTTCAATCTTGTAGTGTCTG 60 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005 3 1 2 85 3 113252193 113253058 CACCTTGAACAAGGGATTCTC 59 113253105 113253123 TGCCGGGTAATGAAGAGTC 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 2 2 2 84 10 67476596 67477097 TGGAAGAGATTTCTTCAGTCGT 60 67476533 67476554 GTGTTCTGAATGGAAAGTCCTG 60 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 3 2 2 80 7 35532159 35535148 GAGGTACAGGTATGAGCGAC 60 35535190 35535209 TGCTTCAGGTTAGCTGTCTC 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920 3 1 4 108 12 5773029 5822311 CCTGGAGTAACGCTTCTCC 60 5772939 5772957 ACATTGATCGGCAACATGG 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000013333 1 1 3 80 15 60743019 60743039 GCAGACCCTTACATTCCTC 58 60742957 60742978 TGTATTCCTTCTTATGCTCCTG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004 3 1 5 99 X 71299988 71300006 ATGAGGAACTTGGTCGTCC 59 71299890 71299926 TAGCATTGGTTCCAGGACAG 60 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 1 3 3 80 10 3342561 3360967 CATATAAGACTGGTCTGATGTACTG 59 3361172 3361190 ATGCTGTCCTCCAGTTCAC 60 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000004384 2 1 3 102 10 3339127 3342506 TTCTACGTCGGTATGAGCA 58 3356720 3356738 AAGGCCAGTACATCAGACC 59 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000010991 1 1 3 125 8 68114180 68154064 GGATCTCTTTCATGGAGATTCAG 59 68092094 68092112 AATGTACAAACGGCTCCGA 60 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000081825 2 1 2 96 5 48314582 48321202 ACATGTCTGAGGTTTCTGGG 60 48321261 48324725 TGGTGAAGTCCATGTCCAC 60 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 1 2 2 80 7 27231303 27231321 TGGATTCCGATGATCTCCC 59 27230358 27231262 GCTTCTTCCTAATCACCTTGAG 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968 1 1 2 80 5 163212989 163214873 CGAAGACAGCCTTTCTGTG 59 163212927 163212946 GACACTCACAGATTCGAGGA 59 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927 2 1 3 82 4 183344292 183346868 GTAGAGCCCAAAGATGTGC 59 183344228 183344246 TTCCTCAATGCTGGATCCT 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 80 4 14177576 14184199 TCTGACATTTGCAGGTCCA 59 14184241 14184261 AAGAACAAATCTGTACACGGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 8 9 81 4 14076234 14076254 GAGGAAGTGGCAAAGAATAGC 59 14076293 14167454 CCTTGGCTAAATAACGAACTCTG 60 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245 3 1 2 80 5 137670291 137670385 CCTCAGATCAAGAGTTGCAG 58 137670428 137670446 TCTTCGGCTTCTCTAGCAC 59 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000086391 3 1 2 80 9 70405968 70432042 CAACCAATTGAAGAAGATCCCA 59 70405909 70405927 GTCAGACTCAGCTTGTTCC 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 3 2 2 80 2 173472398 173475433 ACATCCACAGTTTCAGAAGAC 58 173472338 173472359 CTTCAAGACATCGGTATTACCA 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000019969 1 1 6 99 4 154706136 154708451 ACTATCAGCACCTGCTGTG 60 154708513 154708532 TGGCTCTTTAGGTAGTGGAC 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000076958,ENSRNOT00000071067 2 2 3 80 12 24606764 24606931 GAAACCTGAGGCTGTTGTC 59 24606702 24606721 CTCCACTTGTGGTATTCACG 59 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209 1 1 2 96 19 38601643 38601978 TTCGCTCGGGTATCAAGTC 60 38602037 38602056 GAAAGGCCTTTGGAGTTCTC 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000028651 3 2 3 86 1 221893511 221893530 ACACAGATGACCTTCTGGTG 60 221893578 221906119 ACTCTCCTCCAGTACTAGGC 60 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227 2 1 3 82 1 221802450 221817842 AGTTCTGCAGTGAAGAGGA 58 221824651 221824669 GGAGAACAGTAAGGACCCT 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 1 2 4 85 13 79042701 79042722 TGGACGTGAATCAATCTATCAG 58 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 1 2 4 95 X 71971512 71972296 ACTGTGATACACAGGTCCA 58 71972355 71972373 CTTCACTGGTGAATGGGAG 58 NA Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 3 2 2 91 14 17143420 17145150 CAACGTTCCTACTCCAGGT 59 17143347 17143365 CTGTGTCTGACGGAAGGAG 60 NA Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 1 2 2 80 1 31979803 31980075 TTTGTTCTGATTGATGAGGTGG 59 31980115 31980134 GATAGCATCTGATGGCTCTG 58 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000082529 2 1 2 82 12 12944798 12944817 CTAAGCCGCTTGATGAAGAG 59 12907761 12944753 GTCTTCAGGCACCTTTCTG 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000082529 3 1 2 92 12 12944808 12944827 TCTGTACTTTCTAAGCCGCT 59 12907761 12944753 GTCTTCAGGCACCTTTCTG 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000088814,ENSRNOT00000078345 2 2 4 113 7 122338015 122338033 TGTTGCCAATGAACTGCAG 59 122264230 122337938 AACTGCAGCACATTCTTCC 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 3 2 2 80 14 91855030 91855051 AGAAGAACATAAAGAGCGATGC 59 91855089 91858065 GTTTCTTCCTTAATGACTGGGT 58 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 3 2 2 67 2 232129924 232129942 GCCACTGGAAGACTCTCAG 60 232135465 232135484 CGTCTCTTCTGTATCAGCGT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 2 2 2 80 4 157455004 157455318 ATGATTGGGAACATGGAGCA 60 157455360 157455379 GTTGGAGTAGGAGATGACCG 60 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000082591 2 1 2 104 1 141655397 141655868 TCCAGAAGAAATTCAACAGCAG 59 141654599 141655333 CCACCAATCAAACTTCCACC 60 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 2 2 2 80 3 3541058 3541076 TACGATACCATGGTGGAGG 58 3517147 3541015 CTCTGGTTTCTCTTGCACTG 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972 2 1 4 85 6 109669577 109673379 CCTACAAAGGGACAACCCT 59 109673428 109673446 ATGGTTCAGGTGAAGGGTG 60 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599 3 1 4 94 6 109673392 109673412 CATGACTCTGAGTGCTATGGT 60 109673475 109673498 TGAACTTACCTGTGGAGCC 59 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000050188 1 1 2 92 5 173067805 173067824 GATTTGACCGAGATTCTGGG 59 173067879 173067899 CACATAGTCCCTCGGTAGG 59 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000058548 3 1 2 132 17 63265464 63265482 TAAAGTTGTGGCTGAACCG 58 63267336 63278528 AGTTGTTGGGACCTGAGTC 59 NA Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671 1 1 2 83 12 2910720 2910738 TTACGGATGGAATGCCCTC 60 2910784 2911405 CCTCTTCTATTAGGGCAGGG 59 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159 2 1 2 96 6 27410706 27411255 ACTGGAACACCACAGTCAG 60 27411314 27411333 TCCATGCTCACTACAACCTC 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000091985 2 1 6 108 19 33932882 33932900 AAGTGTATGAGGAACGGCC 60 33932969 33935002 AGTTAACCAGTGCCTTAAACAC 59 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 2 2 2 80 7 97832016 97832034 CTCGAAGAACACGTGTTCC 59 97832078 97833154 ATTGTCCTCCATCACCCTC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000077967,ENSRNOT00000089775 3 2 4 80 12 14717570 14728673 CTTTCCATCATAGAGCCACC 58 14717509 14717527 GATGTCCACGGTTTCTTCC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000089775 3 1 4 104 12 14621316 14621334 ACAGAGATCTTGGACACCT 58 14613489 14613508 ATTCCTCCCATACACCTCC 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 3 3 3 94 10 13321421 13323537 TTCATTAAGGGCATCCAGCT 60 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974 1 1 2 80 13 100302918 100308145 CATCTCCAGACCCAAATCCA 60 100302857 100302875 AGCCTGTCATAGTCAAGCC 60 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000079156 1 1 2 81 10 67854610 67854633 CCAAGTTGTACGATAACTTACTGG 60 67854669 67855068 GATATGTGTTCGATCTGTACTCG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 3 2 2 80 4 77278668 77278686 CACCAGCAGTTACTTGGTG 59 77278727 77279676 AATGCATTTCTTGATCACTGGG 60 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000078424 3 1 2 83 15 109394027 109394045 ACTATATTGGAGCCCAGGA 57 109390017 109393981 TGGTTAGAAATCCCAGTTCC 57 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801 1 1 2 80 8 115589685 115589704 GTGCAGGCTTTATGAAGTGG 60 115589746 115609076 TCCTGTTCTTCCTCTTCCTG 59 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801 2 1 2 80 8 115589684 115589703 TGTGCAGGCTTTATGAAGTG 59 115589745 115609075 CCTGTTCTTCCTCTTCCTGG 60 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000060311 2 1 2 83 3 94636353 94636377 CTTCGCTATCAGCATGTAGG 58 94636289 94636307 GCTTCTCCAACACTTCCTG 59 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006 1 1 2 80 7 10992823 10992841 CTCCTATGTCAGCCTCCAC 59 10992281 10992780 GACTCAAATGCCATCAGAGG 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354 3 1 4 107 17 70705263 70705281 CATGTGGCTTCCACTTCTG 59 70707482 70709777 ACAGACAGTTCGTAGACAGG 59 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 1 2 2 83 1 2005393 2005614 CCCAGATACCTTCACTCGA 58 2005328 2005349 CTTTGGTTAAGCAGTCAATGTC 58 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000015775 3 1 2 89 3 94356947 94357461 CAGAACAGGAGTAATTCATTGC 58 94356879 94356898 TTCCTCAACTTCTTTCCCAC 58 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000085599 1 1 4 80 2 57863100 57867740 TAACAATAAGGGACCGCCTC 60 57863039 57863059 GGGACAAGTGTTCAACAATCC 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 2 3 3 69 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82175283 82175301 GTGACTCCCATACACAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 1 3 4 85 2 250224120 250224139 ACATGATAGACCCACAGCTC 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 2 2 2 129 1 165886104 165886122 AGAGCGATCTTCCTGAGTC 59 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 3 2 2 93 15 20777232 20778256 TTTCCATCACGAAGAACATCTG 59 20777160 20777178 ATTCTCTGGGATGCTGCTG 60 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000001464 3 1 4 91 12 781531 781549 ATCCTCACGGATGGAAACC 60 781603 786749 TCTCCAACTCAGATTGCCTC 60 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 3 1 1 60 14 115386429 115386448 GTGACCCTTGTTGAAGATCC 59 115384904 115384923 CGACTGGTAGTTTGTAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000084628 1 1 2 80 1 53186202 53186221 AAGCAGATTGACCTCAACAG 58 53186430 53186692 TCTAGCTTCAGGGTCACAG 58 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000073757 2 1 2 80 12 22440487 22440505 ACATCCTGCTCTTCTTCCT 58 22441262 22441285 ACAAGCTGATGGAAGAAGC 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912 3 1 4 87 2 92557891 92557909 TTCAGGTCAGACAACACTG 57 92557960 92560994 GTTCCATGGAACGAAAGGT 58 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 2 2 2 80 7 123262395 123264949 AGCATCCAGTGTATCCAGAG 59 123264992 123265010 ACCATAGAACACCACTGCC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000046798 3 2 5 80 20 3413579 3413597 GAGCCTACCCAAGTCTTCC 60 3412558 3413535 GGTATCTGCACCTGGAGTC 60 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119 2 1 2 80 11 82698821 82698842 ATAGACTTCTATCCGAACGGAG 59 82698879 82699154 CACTCGGATGAAATTCATAGCTC 60 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000003872 1 1 4 93 X 70459607 70459625 CAAGATATCGAGCACAGCA 58 70459141 70459326 GGCGATGATAATTGTAGGGA 57 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492 1 1 2 80 6 1560244 1560265 GTGTTTATCAGATCTTTGCCGA 59 1558234 1560205 CTGTCTTTCTGTGCTTTCCTC 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851 2 1 7 81 1 102924306 102924325 ATCATGAAAGCCATCGTTCC 59 102924366 102926955 AAATATCGACTGGGTTTGTGAC 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857 3 2 3 80 19 52681772 52681790 TGGATGTCACCAGGAATGG 59 52681831 52682693 GCTTGTATTTACTCAGGGACTC 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000006311 1 1 10 80 7 117254547 117254565 TGGGTAGCAAGAGAACCAG 59 117253871 117254504 CTCGTTCATCTTTCTTGCCC 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400 1 1 2 80 15 19814017 19814035 CAACTGACATCAATCCCGA 58 19811429 19813973 AGATCCGTGCTGTTATCTG 57 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 1 2 2 81 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220010 106220029 CACCAGTTTGTTCAACACAG 58 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000060514 1 1 2 84 15 28496039 28496058 ATATTAACCTGGCTGCAGAG 58 28495452 28495993 AATGAGGAACCGTACATCTC 57 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 1 2 2 80 10 14310671 14310692 AAAGACCAGTGACATATTTGGG 59 14307365 14310630 AAGACATGATCCTTGGGCT 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 3 2 2 93 4 181346954 181347348 TGAAGTTGTGGAGATAAGCCA 60 181346881 181346899 TCTGTGTAAGTGGGAAGCG 60 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000081770 3 1 3 86 9 10462253 10462272 ACATTGATAATGGCAGCGTG 59 10462181 10462204 TTCTACCAGTGTGCTGTCC 59 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210 1 1 3 80 14 114540418 114540437 TTCTAGATGGAGCCTCTGTG 59 114540354 114540376 TCCTTCTTCCCTTCCATCTG 59 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266 1 1 2 80 X 122945066 122945090 CAGAGAATTTCTCTACTGTGTATCC 59 122945125 122949396 AAACTAAAGAGAAGCCTTTGCG 60 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 1 1 1 61 17 66240105 66240126 GAAAGTGAAATCACTGATGAGG 58 66240320 66240338 GCAGTCTTCTTTGCACCTC 59 NA DesignNoJunction Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768 3 1 3 114 11 71354065 71354083 CTGAGTGTGGAACTGAGCA 60 71352663 71353336 GGTCATATGTTGGCTTGTGAG 59 NA Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 1 2 2 80 2 154522528 154526010 GCCTTACATCAGGTCACTC 58 154522466 154522486 TCCAATAAGAGGATCACTGAC 57 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029 2 1 3 80 4 38241358 38250877 GAAGTTGAAACACTACGCCA 59 38250918 38250938 TTCATCTGTATGACGGGTCTC 59 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 1 2 2 80 8 14115819 14117152 AGCAAAGCAACAGATCTCAG 59 14115758 14115776 AAGTCTCCCATCATTCCCT 58 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534 1 1 2 80 10 8654623 8654641 TTCTGCATTCTTATGGCGT 58 8491779 8654579 CTGCTTCCTGATTACCCTG 58 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090 3 1 2 101 4 152960563 152960581 CAAAGTATGACTGGTCGGG 58 152960644 152966002 CAAATACAACTCCCTTGTCCT 58 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 1 2 2 83 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976090 56982457 AAGATCTGTGCATATGACTCCT 59 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000085132 3 1 2 80 3 112122237 112122257 CTTCTTCTCTACAGGATTCGG 58 112118672 112119160 CTCAAACCTGTTACAACTGC 57 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 3 2 2 80 11 71994468 71994489 TGTCTTGAAGTTCTACGACTCC 60 71994527 71995448 GAAGGAAAGCCATCTTTCTCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000079919,ENSRNOT00000080888 2 2 7 124 5 166038415 166038433 ATGTATGACAGGGCAGGTG 60 166031447 166038327 TACACAAATGCCCTTCCCA 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000080950 3 1 2 82 6 124398056 124398075 CACATATAGTCTGCAAGCCA 58 124390605 124395522 TTTGAATTTGCAGAAGTGCC 58 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607 1 1 2 80 1 13212492 13262077 TGGTTCTCCAGATCATGGA 58 13262118 13262139 GCTTCAAAGCAATGTAGAACTG 59 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 3 2 2 101 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779457 142779476 GAAAGTCATAGAGGGAGCCA 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 3 2 2 80 18 76710204 76710222 AAGACAGGTGTCTCTGCAG 59 76707476 76710162 CAGAAGATGCCTCATGTAGGT 60 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 1 2 2 80 16 20694972 20694990 TGATCATCCTGTGGCTGAG 59 20695034 20695170 GTTCTGCAGTTAGAGGCTG 58 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000040540 1 1 3 80 15 28312039 28312057 TTCAGGAGGTGCAGATCAC 59 28311299 28311997 TCTCCACAGAATGAGTCTTGG 60 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000066975 2 1 2 80 7 49076467 49076486 TGTATCGGACTAGGCAACTC 59 49075501 49076426 CAGGTAGCTTCCATTGTATCC 58 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000019528 1 1 2 98 19 55391993 55393672 CAGGCTGTCATGAATTGGG 59 55391913 55391931 CTAATGGGCCCAGAAACAC 59 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 1 2 2 60 10 47339622 47339641 TTGTCAAGAAGAACGGTCAG 58 47339664 47339682 CGCTGTGACTTCTCATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704 3 1 5 80 14 22215242 22215261 GAACATGAACACGATGACGA 59 22215300 22267865 GCATTCTCCTTATAGAATGGCTC 59 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 1 2 2 80 4 177037409 177037427 GAAGAGTTATCCCGACCCA 59 177033473 177037368 CAATGTAGATGATCTTGCACTG 58 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601 2 1 2 80 1 188316053 188316071 CATGGACTTCGTGTTCTCC 58 188319077 188319098 CTGCTGGATGATTTCATCCC 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172 2 1 3 91 14 21059927 21061759 GAGAGCCTGACAAAGAACAC 59 21059855 21059873 TTGATGCTCGAAGGGAGAG 59 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000081125 3 1 2 80 7 2984829 2984849 AGGGAAGATCTTCAAGAAGGA 58 2984510 2984562 TAGTCCTGGTCATTTACGGA 58 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000036744 3 1 2 82 12 17010877 17010895 GTCCCACTTCTCAGGAAGG 59 17010937 17011073 TGAGGGTATACTCTTATCCACAG 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000078589 1 1 5 80 1 15815316 15815334 AGCGGTTCACTTCATACCA 59 15815375 15816594 TGTCAATCCTCCTGTGTATCTC 59 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257 3 1 4 152 8 53841512 53841533 CAGATATTGACCTTGCAAAGGA 59 53840169 53841400 TTTCTACAGGACCCTTCTCG 59 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000082473 1 1 4 137 7 123634583 123634601 CTCTTCTTCACCTGCCTCC 60 123634056 123634485 CTGTTCTCTTGGTTTGAATGCA 60 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000054812 1 1 4 80 1 226783343 226783397 CTTGGACAGTCTGGAAGGG 60 226779511 226779529 CTCCACTAGACCCTGACAC 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 3 2 4 110 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779537 226779555 TGGAGCCACTTAGCATCAC 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120 2 1 2 80 1 91004420 91004440 CAATATGAAGCACATCGTGTC 58 91004481 91005273 ACCACAATGTCTTTCTTCCA 57 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 3 2 2 86 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177272 88226823 TTTCTGGTATTTCCTCGGTCC 60 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 3 1 4 84 9 81577344 81577362 GCTGACACATCTCCATCCT 59 81576563 81577299 ATAGTCATGGCCTTGATAGACC 60 NA InUTR Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 2 1 1 71 14 21821903 21821922 CAATAACTGCTTGTCTCCCG 59 21819575 21819593 CAGGTAACTCATCACTGGC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 2 1 1 60 1 7801398 7801416 CTGATGGTGTCACCAAGGT 60 7801335 7801354 GCCTTCCTGTGTTTCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 2 2 2 80 10 86876227 86876247 CCTTGCTTTGTTTGTCAAGAC 59 86876289 86877821 TCGGAAGAAGCCCTTACAG 59 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445 2 1 2 92 10 27096957 27096975 GGTGGAGTATGGTACCCTG 59 27094721 27096901 AACATCCGAAGAAGAGGGT 58 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109 3 1 2 83 10 47529374 47529393 ACAGTTCAACAAAGGAAGGC 59 47526899 47529328 CACAGCTGATCCTTGACGA 60 NA Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 1 2 2 81 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054404 14054423 CTCTTGGAGTGAGGAGTGAG 59 NA Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 2 1 1 60 1 98488082 98488100 GTTGGCTTTACCCTTCTCG 59 98487796 98487814 CATGATCATGTCGGCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000049681 2 1 2 103 1 140811660 140811678 CAAACAGCAGAAACAGCCA 59 140811745 140821355 TCACATTGCTCCTGGTCTG 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692 2 1 4 80 1 102787989 102795664 CCACTCTCAGGATGAAGCT 59 102787927 102787945 CGAATGAAAGCCAACTGCT 59 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 2 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152497 104154706 GTTCTTCTGATCATAAGCCGA 58 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802 2 1 2 82 5 21291725 21291744 TACTATTCCACCTTGCAGTG 57 21277900 21291681 ATTCTTCTATCTGCAGCTGG 58 NA Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 2 2 2 81 7 142759256 142759274 TCCAGGGAAGCAAAGTCTG 60 142759319 142759342 TCCTCGTGGTTCACTTTCC 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235 3 1 2 85 1 215216068 215217281 TAGTGGATAAAGCCTCAGTCC 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000089229 1 1 3 80 2 174335456 174336867 AGAGGGAGCCTATGATAGAG 57 174335395 174335415 GGTTCATGAAATTCCTGTCTG 57 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000089229 3 1 3 80 2 174339249 174340805 AAATGGCAGAACCATGACG 59 174339187 174339207 CTGAAATCCTGCTTCCTTCTG 59 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 1 1 1 60 5 106952427 106952445 CTCAATGACCTCAAAGCCT 57 106952469 106952487 GAGTCAAGGGAGGTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548 1 1 2 80 7 120184120 120184139 CAACTCCAATACCAGCTCCA 60 120184182 120185334 ACAGTGTCCCAATCCACAG 60 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000065644 3 1 2 81 15 3974338 3974360 GAGCCTATTGAACAAGAAGTCAG 60 3981771 3983831 GTTGCTCTGTGGCATTAGG 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 3 2 2 80 10 11856992 11861852 AGGAACGGTTTGAAGAAGC 58 11856930 11856949 TCTTGAGCAGTCTCTTCTCC 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000010455 3 1 2 112 2 189889990 189891970 GAATCGGTGGTAGAGGTCG 60 189889896 189889914 CTTGGTCAATACAGGGCGA 60 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988 2 1 2 80 11 81331676 81331695 CACCTACGACCAGTATCAGG 59 81331527 81331634 GTAGAGAAGGAAGCCTCCAG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000065448 2 1 4 81 1 200671081 200692392 GAACCAGAAGATGCCATCTC 59 200671019 200671037 TGCTCCTGTTCTCACTGAC 59 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 1 3 3 80 14 33113726 33117596 GATTTCCTACAGGGAAATCAATCAG 60 33117630 33117652 GTCCAAGGAAGAAATATGAACGG 60 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350 3 1 3 80 14 33117629 33117650 CCCGTTCATATTTCTTCCTTGG 60 33117689 33121121 CATTGGAACCAGCAGTAACTC 59 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777 2 1 2 81 18 1285606 1285626 ACCTTTCGGATTCAACTAGTG 58 1280845 1285565 CCTTCAATTCTTGACTCTGGA 58 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 2 3 3 80 1 273945314 273945335 AGGACCACATCATAATCATCCC 60 273945371 273946207 CTATTATGTTGACCTTCACCAGAG 59 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 3 3 3 80 1 273946274 273946293 CAATCTATTCAACCCGTCCC 59 273946336 273946831 ACTTCATGGAAGACACAGC 58 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000017927 3 2 3 82 4 100292169 100292188 AAATAGCCCTTTGCATGAGC 59 100292232 100292535 TTCGAGTCATCAGGAAGCTG 60 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019853 2 1 4 86 7 117721920 117721938 GAATGAATGGAGCACTGCC 59 117712146 117721873 CCATTAGTACACTGTACAGAGC 58 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786 1 1 3 80 13 103234668 103235287 AGCATAGTCAAGGATAGGCTC 59 103234608 103234626 AATTTCCGCCAATGCTGTC 60 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768 3 1 2 80 19 39001124 39001143 CCAGCAGTTTATCCAACCTG 59 39001184 39014551 AGATTGTCACCTCATGAACCA 60 NA Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 1 2 2 80 13 84789727 84789748 TAGTCTTTGATGGGATTCTGGT 59 84787908 84789687 TCTCAATACCTGGGAAGGAC 59 NA Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 3 2 2 80 13 84776987 84777005 CTGAGCAAATTGCCCTCAG 59 84775812 84776943 CTTCACATACCGTTTCGCC 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925 1 1 3 82 1 143179901 143180861 TCCTCCCAAAGGGTATGTG 59 143179837 143179855 GTGGGTCATGAGAACAAGC 59 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000084739 1 1 2 105 19 43356081 43356099 TAATGCCTGGCATCAAGGT 59 43356168 43356873 GCCATAAGCTTCCTCTGGA 59 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 3 2 2 88 3 97774668 97774686 GGGACATCCTTCTCCACAC 60 97774738 97813069 TGGCAGGTTTCCTAACCAG 60 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604 1 1 2 97 6 123211231 123290820 TCTGCAAGTTTCTCCAGGA 59 123211152 123211170 TCCCAATGGGAGTGATTGG 59 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000083665 1 1 2 80 6 123221600 123221618 ATCCTGACATTGATGCTGC 58 123211224 123221558 GTATCACTCCTGGAGAAACTG 58 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 3 2 2 80 3 56063602 56067502 TCCACACCCAGAATATGGA 58 56067545 56067564 TCTGTGATCGTAGTCTGTCC 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 3 2 2 118 16 20888688 20888707 ACGAAGAGGAACTGGATTCC 60 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 2 2 2 85 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723700 TTGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962 1 1 2 80 9 112008510 112012592 CTCTTCAGGAGGGAGAACAG 59 112008449 112008467 TGCTGCTCTCATTGACCTC 60 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000091242 2 1 2 85 10 37048174 37048195 AAGCTGGATGACATTCTAACAG 59 37049124 37051307 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 1 2 2 98 1 212539865 212539883 TTTGCTATGGCACTTCTGG 58 212538619 212539803 GATCTTGTGCCGAAGTAGG 58 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076549 1 1 2 86 2 208557034 208557756 CACCATCAGAACAATCTCCA 58 208556407 208556425 GCCAGGATTAAGTGTTCCT 57 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950 3 1 2 82 4 120295693 120295711 GTGATGACTGGGACCATCC 60 120219423 120295650 TAGTCATCCATTACCTTGAGGG 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867 2 1 5 80 11 81426444 81426465 AATGCTAACGTGTACATGAGAC 59 81424315 81426405 AGAAATCATCATGTCTAGCGC 59 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 3 2 2 80 1 273717500 273717518 CCCTGAGACGAATAGGACC 59 273716182 273717460 TCTGTAGTTCCATCCTTGTACTG 60 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956 2 1 2 112 10 109972685 109972704 GTGACCAATGTGGAAATCCA 59 109972377 109972482 AAAGCAATCATGACCTGGG 58 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 1 2 2 80 20 28064584 28064603 ATGAGGACAATGGAAATGGG 58 28064643 28067794 CTTTCTCACTCTGGGATTTCTG 59 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 3 2 2 81 16 24586316 24588409 ACTCAAACAGGACAGAGGA 58 24584350 24584370 ATCATCACTGAAATCCAAGGC 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000081051 3 1 2 151 5 133762253 133762273 AGTAGTGGTAGGAGTGATGAC 58 133761559 133761807 CCAATCTTTCCTTCATCAACAG 58 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199 1 1 2 178 1 100231451 100233896 GACATACATGGTGTTCCGAC 59 100231214 100231232 TCAGGAAGGCCTTGTAACG 60 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340 3 1 2 80 5 86503228 86503246 AGAACTCACTGCTGACTCC 59 86498551 86503184 CAGTTCTCAGACTCCTCGA 58 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 2 2 3 80 6 126116856 126116876 CTGGAAGATGGTAATGACCTC 58 126116918 126121100 AGGTTTCTCCTTCACTTGC 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000084851 1 1 2 84 1 267439282 267439300 ATGACAGAGCAGGAGAACG 60 267437790 267438613 CACGGTCTCCTTTAGGTCC 60 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617 3 1 2 86 1 281825476 281834164 GCCTAATGCAATGGGTTCAG 60 281825409 281825429 AAAGTTCAGATTCCACAGCTG 59 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302 3 1 2 127 7 144087721 144087739 GTCAAACAGATCTGCGTGG 59 144088687 144091517 ATGGTATAGGCCTGACCAC 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 1 2 2 80 14 83139921 83139941 CAGAACCTTCCATAAGGTGAC 59 83139387 83139882 GCAGATTCATAAGGGTACTTGG 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 2 2 2 80 14 83092688 83092709 AAGATAAATATTCTGCCTCCGC 59 83092509 83092648 GAAACACTGTTCCTGTGACG 60 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 1 2 2 80 2 259382705 259382723 TTTATCCTGGCCATGGACG 60 259381632 259382661 ATACCCTTCTGTCGTGCAG 60 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000080068 3 1 2 81 12 22965193 22965212 GGAGAAGACTCACAGGTCC 59 22967754 22967772 TCACCTTTGGAACCTGGAG 59 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000084737 1 1 2 119 5 159722308 159722326 TCCAAGCCGAACATCTCTG 60 159722824 159723927 TTTGAACAGAGCGTTGGGA 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 3 2 3 89 8 117769893 117769912 GAAATCCAGGACCACTACCC 60 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026252 1 1 4 97 1 81126079 81126097 TAAGGAGGAGTTCAGGCTG 58 81124968 81126019 GTTGATACTCCACTGAGAGC 58 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000006802 2 1 2 82 14 86394990 86395008 TCTATTTCCACATCGGCGA 59 86394751 86394944 TCGATAGTTGCCGATGACC 60 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866 3 1 2 80 19 41712693 41712711 TACCAGTCAGAAGCTGAGG 58 41712754 41724183 CATTATCTGCACCACACCTC 59 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 1 2 2 80 11 69018517 69019951 CTAGAGTCTGAAGAAGATGTCTCC 60 69018460 69018481 AGAGAAGTAGGGCTTTACATGG 60 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000067060 2 1 2 130 11 69193380 69223106 TTACCTGGGAAGACCATGG 59 69193268 69193286 GGAGGCAGAATGAAAGCAG 59 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943 3 1 2 167 12 23606530 23606648 CCAGCATCAGAACGTACCA 60 23605485 23605503 TTGCCTATGTTCTGGACCG 60 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 2 1 3 84 X 70567173 70567191 GTGACTGACACCTTCTACC 57 70567382 70567401 AGATAACCAGAGTGACTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210 2 1 2 102 6 28272611 28272629 ATGCCAAGACTCACCTTCC 60 28272695 28327934 TGGCTTTCTTCTCAGCCTC 60 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211 1 1 2 80 3 63416319 63421097 GGTGGCTACAACAGTTCCT 60 63421141 63421159 ATGTCTGCACAAAGGTTGG 59 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000079407 2 1 2 96 5 165416400 165416419 TATTGCCACAACTACCTGGG 60 165416477 165416941 GTTAGAGGCTCTGCTCTGAG 60 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179 1 1 2 80 15 3465295 3465313 GAGGTGATTAACCAGCCGA 60 3459795 3465251 GTCATTGCCCTTGCTAGAC 59 NA Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 1 2 2 80 3 120177348 120177366 GTTGGGAATGGAAACGGTG 60 120179048 120179836 GTTCTTTGCCTTTCTGAAAGC 59 NA Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 2 2 2 82 3 120173630 120174692 GATTATTGGTGAAGGGCGT 58 120174736 120174756 CAATGTTCTGAACAACTCCAC 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000079694 2 1 3 80 2 240652232 240652251 GTGATCCAAACCCAGATGAC 59 240652288 240652777 CTAACCTATTGTACTTGTCTCTGTC 59 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204 1 1 3 80 2 240627732 240642901 GGAACTTAGTGATTTGGCCC 59 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558 1 1 2 82 6 93629246 93644564 TGGCCTCAGGTAATATTTGTG 58 93644606 93644626 AGAATCACGTTGTAACTCCAG 58 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867 2 1 2 80 10 94475479 94476020 ATGTCTACAGTTTCCCTCCA 58 94476063 94476081 AGCAGGTCACATTAACGTC 58 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 3 1 1 61 14 44613098 44613119 TTTAACAGCTGTCTACACTGTG 59 44548523 44548542 TATGCCACACTTTCGAATGC 59 NA DesignNoJunction Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388 2 1 2 80 1 80634234 80634403 GAACCAGAAATGCCCTCAC 59 80634172 80634190 ACCAGCATCAAAGTATGGC 58 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 2 3 3 80 12 25485033 25485051 AGAATGAGTCTGAAGGCCC 59 25485668 25486326 CTTTGATTTCTTCTGTTGCTGG 59 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000070873 1 1 2 80 3 5543251 5544953 CCAGGGAAAGTGTACAGAC 58 5544996 5545015 CCGTTGGAAGTAGGTAAAGG 58 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991 2 2 3 80 14 34481199 34481219 GTTCATCATTAACACAGCCAG 58 34481260 34484605 CTGAAAGCTGAAACTGTGAC 57 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 1 3 3 80 10 35875730 35875749 GGGTATAACAGCATTGGCAG 59 35875791 35875901 ATCATAGCCTCCATAGCCTC 59 NA InUTR Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419 1 1 2 80 5 59084329 59084347 GAGAACCAGGATTGGTGCT 60 59084389 59088506 TCCAGTTTACCTGTTCAGGTC 60 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 1 2 2 80 5 173384613 173384716 CAACACAAGGCTGTGTCTC 59 173384759 173384778 GTTAGAATGGTGGAGACGGA 59 NA Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 1 2 2 80 17 1067901 1067920 CCCTACTACAACACCTGGAC 60 1065577 1067859 GTTCCAACTTCCATTGCCTG 60 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069 2 1 2 122 12 24978530 24978548 CCTCTTGCTCAACCTCCTC 60 24986592 24988345 ATACCAGCTCCTGGATAATAGAC 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000091167 1 1 3 82 15 35018101 35019071 ACTGAAGGAGGTTGAAATGG 58 35020143 35020161 CACAAAGCTGGATGGAGTC 59 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 2 2 3 103 9 118843850 118920880 CCAGTACCTACAGGTTCCC 59 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321 1 1 2 80 3 149200752 149200772 GATGTTTGAGAATGTGGTAGC 57 149200813 149203927 ATCATCACTGGGTTACACTC 57 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000015482 1 1 2 80 3 149160936 149160955 GGATGTTCGAGAATGTTGTG 57 149160998 149161831 TCATCACTGGGTTACATGC 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600 3 1 2 83 6 136418661 136418679 AGAACTTCAAGACATGGCG 58 136416116 136418614 TGTAAACGCTGTTCCTTGG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 2 2 3 80 2 250763782 250765225 GTCGGATATGACAGGAGGG 59 250763720 250763739 GAGGAAATCCCACTGAAAGC 59 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 1 1 1 60 1 88621387 88621405 TACAGACTGACCATGACGC 60 88621823 88621842 AGCCCAAGCAGTATAAACAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 1 1 1 60 15 104191400 104191420 CATGATGCTTACGTTTCACAG 58 104191358 104191376 TCTCAGGTCCTCCTTTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173 1 1 2 116 4 57419078 57443586 AAGATGCTAATGGCCTGGT 59 57443666 57443684 ATATCCTGGTGGTCACTGG 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916 2 1 2 134 15 34342137 34352405 AAAGTGAAGACGCTGACTG 58 34341712 34341730 TTTGCCACTGTAGATGAGC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015420 2 1 3 81 5 127651597 127651615 GACTGCACAATCACCATGG 59 127648926 127651552 CTTGAAAGAAGGCCGACTG 59 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000065145 1 1 2 81 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102340959 102344233 TGGTCAGATAGGTGAGCTC 58 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000083395 1 1 2 80 8 13569783 13584664 CTGCACAAGGTAATAATGAGTCTG 60 13569726 13569745 CGTCTTCAAGTACTGCTCCA 60 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709 3 1 2 100 6 135214157 135214175 AGAGACTGACGGTATTGGT 58 135214239 135224101 CAACAAGCCCACTTTACCA 58 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000012201 1 1 2 86 5 126670830 126671168 CAATAAAGACCTTGAGGGCTG 59 126671216 126671234 CTGGTGACCTTCTCCATGG 60 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 2 2 2 92 10 35713753 35714015 CATTAAAGAGAAGAAGGAGTGC 57 35713682 35713700 CCATCACAAATCACGTTGG 57 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 2 2 2 82 1 198458188 198458209 CTCAGCTTATATTTCGGACCAC 59 198456845 198458146 CACCAGTACCTTTGTTGCAG 60 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 3 2 2 84 6 137210243 137212042 GGTCTTCGAAAGAACCAAGC 60 137212087 137212107 GTTGATGGAACAACCTTCACC 60 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 2 2 2 80 1 216871417 216871732 CAATATGAGGACTACAGCCCT 59 216871357 216871378 CTGTAGAGTGTGAAGAATCCCA 60 NA Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 1 1 1 60 15 33770384 33770405 GGATCTACAACCCATGTTAGAG 58 33770065 33770084 AGAACCTCCAGAATCCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 2 2 2 94 1 197999339 197999357 TTTCTGGACCCACAGAGAC 59 197999414 197999731 ACTGAAGGAATCCAGTGCTC 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000008074 2 1 5 80 8 6140370 6152367 TATTTCGGCAGGAATTAGCTC 58 6140310 6140330 GAGAAGACACTGCATTCTGAG 59 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 2 4 4 80 9 104717038 104718645 TCGGTCTTAATTCATGGTGCT 60 104716978 104717001 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458 2 1 2 81 14 37262076 37284502 CTGCAGCTGTCAACTTTCAG 60 37262014 37262032 AGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 3 2 2 82 20 32296563 32296581 TATGAACGCAGGTCAGGTG 60 32294810 32296517 AGGGAACAGCAATACCTGG 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600 1 1 2 80 4 9203449 9203468 CTGAGAACAGAACAGCACTG 59 9203507 9215580 GGGAGGTAATCTTTAAACTGACC 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124 1 1 2 86 1 184187091 184187111 CTGGTGCAGAACTATATGCAG 59 184185126 184187043 CTGGGCAGTGACACTAGAG 60 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 2 1 1 61 10 74386488 74386509 CTGTGTACACAAATTTCACTCC 58 74384386 74384404 GGTTCCTATCTGCCTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 1 2 2 82 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121948 ATTCACACTCTGTCCCTTAGAG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 2 4 4 80 17 4256428 4270622 TACAACACGAACGAAGAAGGA 60 4270664 4270682 ATAGTCCTCGTTGTGCAGG 60 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063 3 2 3 81 1 190029618 190029637 CTGATGCCACCATTACTGTC 59 190029678 190029828 CCTGATGCACTTCTTTCTTCAG 60 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 2 3 5 81 9 97989254 97989273 CTAGTGGCTGTCTTTAGCCT 59 97975848 97989212 TCTTGTTGACTTCCATGACTG 58 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000091370 2 1 2 84 17 5613821 5613841 TTAGAGGTTGAATTAGCGGAG 58 5613886 5613991 CTCATACTTCCTCAGAGTCG 57 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000085483 2 1 2 81 4 56815549 56815567 TCAGGAGAGCTTTCTTGGT 58 56815612 56820315 AAAGCCAAACCATGTGGTC 59 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000022665 1 1 3 80 18 12028710 12028730 GAATGGACGCAAATTACAGAG 58 12028770 12029080 AAGAATACAGATTGGTGGAGG 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 3 2 3 80 18 12032959 12032978 TCCAGAATGTTCTGATGGAG 57 12033019 12033405 ATGGTGGTTATACCATCATGG 58 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000009665 3 1 3 88 6 34042313 34053183 GGTACATGGTGGTCAACCT 59 34053233 34053253 ATACTGAATGTTGACAGCTGG 58 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588 3 1 2 87 7 117661377 117661395 ACCAAGGCATTTACAGCAG 59 117661445 117661544 ATCTCCAGCCTCAGAATCAC 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000048875 2 2 5 178 8 39455854 39460766 TGGACATTGTACTCTCCCTG 59 39437202 39437220 CCATCATTGTCAGAGCTGG 58 NA InUTR Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000050284 2 1 3 96 13 52668963 52673644 GAACAGGAAGAGCAAGAGGA 60 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695 1 1 3 88 15 109755737 109755755 ATGACATAACCCAGCATCC 57 109754808 109755688 CATTGTAACCTTGACAGATAGC 57 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404,ENSRNOT00000006624 1 2 3 86 15 109755735 109755753 GACATAACCCAGCATCCGT 60 109755582 109755688 TACAGACCACTTGACAGATAGC 60 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 3 2 2 97 7 12517651 12517671 AGCAAGATCTGTGTAAATGGG 58 12516847 12517593 CATTTGATGGCATTTCCCAG 58 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800 1 1 2 80 15 39638566 39638587 ATCTATCAGGAAAGCATGTGTC 58 39638628 39638994 AACACGAAGACCTCATCAC 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000091789 3 1 3 80 8 82120645 82120664 TACCAGGAGTTGAATGAGGA 58 82120707 82122170 CTGGGATTCTAAGAGCCTG 57 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000064836 2 1 2 136 1 8857102 8878042 CCTACTACTCTTAAGAAACAGTTGG 59 8856990 8857008 TTGTGAAATCGTCCAGCTC 58 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000033863 2 1 2 115 3 172722991 172734963 CTGAGAGCAGGAGTTTCTG 58 172800973 172800992 AGGGAATGTGTTTGTTACCA 57 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000090912 1 1 2 83 2 104883049 104883070 GATACTCAATTTGCTCTTGCAC 58 104883113 104885891 CTCCATCACAGATGTACCCT 59 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 3 2 2 81 13 52860363 52860381 TGATGTGGAAGCCTACTGC 60 52860422 52863399 GATGACGATAATGACCTTGATGG 60 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 3 3 3 80 6 132777440 132777459 TTTCCCGAAGATCTTCCGAG 60 132777174 132777398 ATTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 1 2 3 83 6 132773942 132773960 TGTGAAGTAGACGTGTCCT 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 2 2 2 80 2 256911491 256913245 GCATTGTTGGGTTATGCAG 58 256911429 256911447 TTCGTGTTTGGTGAACCAG 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959 3 1 3 148 1 32573327 32573345 GGAGAAGATCACGCATACC 58 32574331 32576093 CGACAAATACTCTTTCTGACG 57 NA InUTR Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 3 1 1 60 18 15918627 15918645 TGAACTTGATGACCCTGGA 58 15918356 15918375 TACAAGTACTTCCCGTTTCC 57 NA DesignNoJunction Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 1 2 4 80 8 117889824 117890854 CCCAAGTGAACAAGAGATGG 59 117889562 117889582 AGAAGAACCACCTCTTCAGAC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000047964 3 1 8 81 1 226468245 226480827 CAACTTGTCCAAGTTGCCT 59 226480872 226480890 GTCAGACTCATCATGTGGC 58 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036180 1 1 8 84 1 226467054 226467073 GTTCCTATCCTCCCAAGGAG 59 226467119 226471444 TCCTCGAAATTGAGGGACAG 60 NA Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 1 2 2 80 10 15705209 15705229 TTACCAGAATGTTCCCTCTCC 59 15705270 15705985 CCTATCCAGGTCTGGAAGTC 59 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625 2 1 2 82 4 156992539 156993280 TAACTCTGAGGGCACATCG 59 156992475 156992494 CAAATTCCACCTGAAGAGCA 59 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 1 2 2 80 2 114238674 114238694 ATTGCTACATACTACGGTGCT 59 114238734 114259195 ACAGAACTCCATAACCAACCA 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000078494 2 1 6 80 1 41555596 41561428 CCAGCCTAAGGAATCAAGG 58 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000087621 2 1 2 80 X 29476586 29476605 AATGAAGCAGAGGATTTGGA 57 29476647 29481423 GTTTAAGTCTGCTTTGTGCT 57 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174 1 1 2 80 8 22294801 22297328 GACTGCACAGTGTACAAGG 59 22297370 22297390 GATGACAACAGACTTCCACTC 59 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 1 2 2 80 4 57808168 57809082 GCTACAAATAGGAGAGGCGA 59 57808107 57808126 GCATTCAGAGTTGGGATGAG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 3 4 4 80 20 4591626 4591815 CTTAGACAACAAGGATGGTGAG 59 4591855 4591874 CACAGGTGGTTAATGAAGCG 60 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000079599 1 1 2 80 7 114504790 114505865 GCTATGGAATAGATGAAGCCAG 59 114504731 114504750 ACTGGCCTTCTCCAATACAG 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 1 3 3 100 6 136151627 136151646 TTCTGTGGTCTGTGAATCAG 58 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 1 2 2 80 7 12772112 12772130 TACCACTACCGCTTTAACG 57 12771958 12772069 GTAGATCATGGAATGCTGGA 57 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000010466 1 1 2 80 10 104625560 104625578 GGACACTGTGGAGTCTGTC 60 104625364 104625519 CGAGCTTCTTTAAAGATCCTCC 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076545 3 2 3 95 1 48048383 48048402 AAGTCACCTGTTGGAAGGAG 60 48048460 48049619 GTCCTACCAAGGGCTTCTG 60 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000081621 2 1 2 97 9 16071510 16071530 ACAGTGACATCATGAACTCTC 58 16072966 16072988 TCCTCTAACCCTTATCGCTC 58 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000013073 2 1 3 80 4 61782103 61782121 TTCCACATCCAGAGGAACG 59 61782162 61782792 GTCAAAGACCTGAATGTTCTCC 59 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287 2 1 2 80 1 261428423 261430028 AGATGCAATAGAGGAGGACG 59 261430071 261430089 CTGAGGAAGCCATTGTCCT 59 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 1 1 2 70 2 95078030 95078048 AAAGACCAGACGTGGATGG 60 95173505 95173523 TTCAAGATCCAGGAGACGC 60 NA DesignNoJunction Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176 1 1 2 83 2 203817728 203817746 GAGTATGAATGCCACACCC 58 203817793 203820127 ATCTGGGATCACCACTAGG 58 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176 3 1 2 84 2 203817728 203817746 GAGTATGAATGCCACACCC 58 203817793 203820128 AATCTGGGATCACCACTAGG 59 NA Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 2 1 1 84 10 14021926 14021944 TTCAGTCCTGGACTTCAGC 59 14021278 14021296 ATGATTTGCTGCAGGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005 3 1 2 80 16 48320935 48320953 CGGATGGCATGGATATGAC 58 48316303 48320894 AAGTTCGACTTGAAATCAGGTC 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 2 2 3 80 12 37627112 37627130 CATGAGCTCTGGTGATGAC 58 37627173 37628219 ATTAACCATGGATCGTCCTC 57 NA Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 2 2 2 83 10 49561858 49567298 CAAATCCTTGCTGGTCTGTG 60 49567343 49567362 GTAGTCGTTGTTGACATGCC 60 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281 2 1 2 93 6 136356407 136356425 AACCTGGGAGCACTTTACC 60 136356482 136358002 TGTCAAGACCCTGCTTACG 60 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 2 1 1 60 10 70303602 70303620 GATGACAGAAACCAACCCA 58 70304902 70304925 CATATTCATCCTGGAGATCATCTG 59 NA DesignNoJunction Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000040204 3 1 2 152 9 15640631 15646340 GCAGCAGATAACCACTTCTG 59 15639804 15640521 GGCTCGTGTACTTTAATAGAAAGG 60 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 3 2 2 80 5 63097217 63097235 GCCCTTTCATTTCAGAGGG 59 63097278 63099993 GTGGTAAACCTGATCCAGAC 58 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742 2 1 2 81 17 1723454 1723473 ACACAAGGAGACAGACTTCG 60 1705044 1723410 CAAAGCCATGCAGAGTGAG 59 NA Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 3 2 2 90 5 4971313 4971333 ACTTAAAGAAAGCAGGAGGAG 58 4959566 4971263 AGGACAAACCAATACCTTGTG 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898 2 2 3 115 18 25199538 25206121 AAATTGCCAAGGCAGAAGAG 59 25206343 25206361 GACATAGAAACCCACACGG 58 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 3 3 3 80 13 56603696 56604296 AGAACAAGAGACATGTTTGGC 59 56604335 56604356 CTGTCCTTCACTTTGAATGTCC 60 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 1 2 2 80 20 33185804 33185822 GTTCGAGTCTTCACCTCCA 59 33185478 33185761 TGGACATGGCTTGATTTCTG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 9 18 60 1 43508740 43508763 CTAATACAGTGGATCGAACTAACC 59 43527510 43527528 AATGGAGCAGTTTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675 3 1 2 90 4 65132767 65132787 CATGACATCGATTGTCGCA 59 65134268 65134288 TTCATCCTTTAACAAGGGTGG 58 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 1 3 3 80 7 12665244 12665342 AGTTCTTCCAGAAGGACCG 59 12665182 12665200 GCAGCTCAATTAGTGCCTG 59 NA Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000057061 2 1 2 82 5 134738126 134738144 CTCCTCATCTTCGCCTACC 59 134738187 134739024 TGGATTCTCAGGTTTCCTATGG 60 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167 3 1 2 86 5 165372400 165372418 TCCAACCCAAGTGGAACTG 60 165372468 165373125 TACCAGAAAGGACACCAGC 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680 2 1 2 80 11 86512989 86517377 GGACAAACAGGACATCGAC 59 86517421 86517439 CCCTTCTTGACTGACTTGC 59 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 2 2 2 140 X 15348425 15451595 TCAAACATCTGGAGCCAGAG 60 15451698 15451890 AAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 1 4 4 80 4 165310581 165310601 GGGATGAATGTAAACAGACCT 58 165176326 165310539 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 3 2 2 80 X 15156398 15156417 TGGGAACAGGAGCTATACTC 58 15156460 15156566 TTGACAGTCATCTCCAGCA 59 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000064755 1 1 4 81 5 58684244 58684262 CTCTATGGCATCGACAGCA 60 58684307 58686359 GGACCAGTGACATAGCCAG 60 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 2 2 2 80 6 55423171 55423190 GTCAGGGCTGATATAACTGG 58 55423233 55423756 GTTGTCTATCAGCATGGGT 57 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000080818 1 1 3 80 3 121832996 121833023 GAAGAATACAGTTTGGACCATCTG 60 121831719 121831738 GCAGTTCTCATGAAGTGAGC 59 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548 3 1 2 81 19 57455886 57471140 ACCATGCTCCAGATTCTGTC 60 57455824 57455843 AGGGCTGAAGTTGAATAGCT 59 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765 2 1 2 95 5 122643554 122655276 GATGTGATGCTGCCATCTG 59 122659439 122659457 ATGAACCAGCATGTCAGCT 60 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883 1 1 2 83 6 71180534 71198955 GGAGGCTATTTGAGTTCCCT 59 71180470 71180488 TTTCAGAGGCAGGATCGTG 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 3 1 5 81 20 5416908 5416926 TTGCAGCTGTGATCATTGG 59 5416970 5417163 GTGTAGACTCCTCCTTTCCT 58 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 3 2 2 85 1 79983401 79985157 ATTCAATGAAGAGCGGCTG 59 79985205 79985224 GAGAAGCAAGGAACAGACTC 58 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 2 2 2 80 5 135021957 135024401 CAATCTACTCATCTTTCTCTGTGG 59 135021900 135021919 TTCAGGAAAGATGTCCCGTC 60 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 3 2 2 80 13 56901970 56904804 TCGATGTGTTGAATCAACAGG 59 56901910 56901929 ACTGGTAATGACAAGGAGGT 58 NA Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 1 2 2 80 10 55629647 55629666 TGTTAGGTCTACAGGGAGAG 58 55629709 55630893 ACATGGTCTTCCTCCTCAG 58 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366 1 1 2 93 1 116674237 116674255 TTACAACAGGCACAGACAG 58 116674309 116675340 GTAGGTAACCTTTCTGTGTCTG 59 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000073286 1 1 2 80 8 85795617 85795637 GGCCTATTAGTACCAAAGGAG 58 85795555 85795577 AAACGGCTCTTCTTAGATTGG 59 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 1 2 2 80 9 20215438 20215457 GTTAGACGAAAGGGAAGCTG 59 20215498 20215934 CAGTCCTTCACATTATCTGCG 59 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 3 2 2 80 9 20215437 20215455 AGTTAGACGAAAGGGAAGC 57 20215498 20215933 AGTCCTTCACATTATCTGCG 58 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000071439 2 1 2 98 9 20216282 20216301 AGGAAGTACACGAGAAGCTC 59 20216362 20216504 CTCCAGTCACAGAACCTCC 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000089723 2 1 4 80 1 128226675 128226694 GATCTACGGGTTGTCATTCC 58 128217313 128226061 GGCATTCAGCTCTAGATTCTG 59 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325 2 1 2 129 8 4441120 4441143 CTCATCTTAGTCTCCATTCTTGTG 59 4441229 4577178 CTCTCCGGTACAAGTCATCTC 60 NA Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 3 1 1 91 16 27472196 27472215 ATATTGCTGCCTACAGAGCT 59 27472108 27472126 TTTGTCCTCAGTCGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 3 2 2 80 X 15099606 15099624 GGGCTCAACTTCAACACTG 59 15099668 15099963 GACAACAACCACCTCAGAG 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 3 3 3 80 1 135354896 135360200 AGCTTTGTCATAAGGTGCA 57 135354834 135354852 CATGGTCACTAGGTCAGTC 57 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702 2 1 2 85 17 9326823 9326841 ATTTAGCCGGCTTTGAGGT 60 9326890 9332797 CTCCAGTGTGCTTCCTAGG 60 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775 1 1 2 80 3 149354340 149354507 CAGCAAACATGAATGACCCT 59 149354279 149354297 ATCCCAGTATGAACTGGGC 59 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 1 2 2 80 11 17549473 17553319 CAAGTATGAACCAGAGATTCATCC 59 17553357 17553376 TTCTCATGGGTGTCTTCAGG 60 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 2 2 2 80 13 73686932 73687736 TTTGAGGAAGGAGAAACCGA 59 73686871 73686889 GACAGAGTCCCTGGATCTG 59 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 3 2 2 81 13 73686908 73686931 AGATGATCTTGAGAGCTCTTACAG 60 73684777 73686868 TGCGGCTTCATCTCTAGAC 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 2 2 2 80 7 66676176 66676198 CTCAAGAGATTCTCCTATAGTCG 58 66676236 66678437 CATATCCAAGTCACTGATGGG 58 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755 3 1 2 82 6 98437627 98437646 AACACAAACAGTTCCTGGTG 59 98435714 98437583 CCTAATAACCTGGGCATGGA 59 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 1 3 3 80 8 90629318 90630521 CTGCTAAGAAAGAACCCGG 58 90629256 90629274 CTTCCTTTCCAGCTTCCTG 58 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 2 2 2 80 10 110905680 110906716 ACCAGTGACTTTGTTGTCC 58 110906760 110906778 CCGTAGGTGAATGACTGAC 58 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 2 2 2 82 4 123619397 123619415 GTATGCTGTGCAAATCCTG 57 123619461 123620505 CCTGCTCATCTGAGTTGTC 58 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657 2 1 2 80 4 123614496 123614514 CCGAGAAAGTTCGACTGGA 60 123614556 123615218 TCTGTATTCTCACTGCCTCTG 59 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036672 3 1 4 108 8 124892715 124936114 GTCTCCACATACCAGGGTG 60 124892625 124892644 GGGAAAGATGGTTCATCTGC 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 3 3 3 139 1 168946040 168965310 TGAGAACTTCAGGCTCCTG 59 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 1 2 6 80 1 41928758 41928777 TCCAGAGACCTTAAACAGCA 59 41928252 41928718 TCTTGCATATTGCTTGACTTCC 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571 1 1 6 80 1 41812273 41813932 AGCTCTCCAAATACAAGTCAC 58 41812213 41812231 CCTCACTCTTCTCTTGCAC 58 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854,ENSRNOT00000044081 3 2 2 80 11 24492495 24497991 ATGTCCCAGGTCATGAGAG 59 24492433 24492452 GATAACGGCCTTCTTGTCAG 59 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 2 2 2 80 9 27441384 27441403 GCCATTCTCAACTACATTGC 58 27440317 27441341 TGCATACATGTCGATGAGG 57 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 3 3 3 80 4 165986751 165988389 TGGCTCAGATGAAGAGGTC 59 165985856 165985875 TGACCATGTTTCTGGTTCTG 58 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157 3 1 2 80 1 204267363 204267383 GACTTCATCCATGCCTTTCAG 59 204254842 204267324 ATAGTCTGAGTACAACCTCTCC 59 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 3 2 2 80 19 14552815 14553125 GATGAGTTCGACAAGATGCG 60 14553168 14553186 CTTGGCAATGGAGATGGTC 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 3 1 1 70 2 140721884 140721902 ATCATATCGCTGTGGATGG 57 140726489 140726507 ATGTACAGGAGACCCAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 3 3 3 80 20 5110646 5111499 CTGGAACCTGATGAAGAGC 58 5110584 5110602 CAACCCATAGAGCATCTCG 58 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372 3 1 2 80 9 27402400 27402418 TTCACTACTTCGATGGCAG 57 27402459 27403401 CAGATTGTTTCTCCTCTACTCC 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849 3 1 2 82 9 76638717 76638736 CTGTCATAGAGAAGCTCACG 58 76621473 76638674 CAGTAGATGTCTCATTCCCAC 58 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953 1 1 2 102 6 7924122 7924438 GGCATTTGGTATTGATAAGAGC 58 7924500 7926911 AGGAGGAGACCCTATTTGAC 58 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 1 2 2 80 14 7190508 7200509 TCACTCTAAAGGTCGGCTC 59 7200553 7200571 ACATGGCTCTGAAGTAGGG 59 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814 1 1 2 99 1 234253386 234377621 GAGCACAAATTGAAGTGATACC 58 234377681 234388936 CTGAAGAATCCCTTGCAGC 59 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437 2 1 2 80 8 94500711 94500730 CTCCCAGCAGTCTTATGGAG 60 94494283 94500669 GAGCACCAGATTTGTTTCCA 59 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387 1 1 2 88 13 83871484 83871502 CAATGTTGACAGCTCAGCG 60 83865736 83871432 ATGGTGATTTCTCCCTGGC 60 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000057036 1 2 3 80 12 46413624 46414613 TGTCACAAGATGGAGCAGG 60 46413562 46413581 CACCTCCTTCTGACTAAGCA 59 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336 2 1 2 80 7 18435867 18436222 GACTGGTCTGAGTGTACCC 59 18436266 18436284 GGATCGTTGATCTGCACTC 58 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 1 2 2 80 2 122802604 122803684 TTACTCCGATTTGGAAAGACCA 60 122803724 122803743 GCCATACAGGTTGATGAGGA 60 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 2 2 2 80 2 122802605 122803029 TACTCCGATTTGGAAAGACCA 59 122803070 122803089 TGCCATACAGGTTGATGAGG 60 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000000787 3 1 3 80 20 21874721 21874740 CATCAAACAGGAAATGGCCA 59 21874783 21878575 TCTGATGAGACCTCAGACG 58 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000049303 2 3 5 127 4 176292087 176294945 AGATCAAGGTGTTTCTGATGG 58 176291980 176292000 GAATCCAACTATAGCTGTGGG 58 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 1 3 3 80 1 87004746 87005047 AGATGAATGTCTGTGTCTCC 57 87005090 87005108 TGTAACTGCAAGATCCGTC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000007998 3 1 3 97 3 129767316 129767335 TTATGTTGGATGAGCAAGGC 59 129776865 129778070 GTCTGGAATGTTTGATTCTGC 58 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000078720 1 1 2 80 8 116375782 116375803 ATATCAACTCAATGACTCAGCC 58 116371067 116373566 CACTGGAAAGGGATATAGTCAC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014118 3 1 4 80 10 65316644 65316666 GTTCTGACTACAAGCAGTATGTG 60 65312361 65316605 CCAGAGACAGTCTCTGAGTG 59 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482 1 1 2 81 9 94897832 94898064 CACTAATATCTTTGGTCTGTCCG 59 94898728 94898746 GGAAGAGACAGAGCGTCTC 60 NA Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 1 2 2 80 1 126963353 126964822 AGAATTTGCCGTATAGGTGAG 58 126964862 126964882 CACTAGACTGTTGTTGGTGAG 59 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507 3 2 3 90 6 10378542 10378560 ACCAAACTGAAGGAGGAGC 60 10378614 10379611 AGTTCTGGCTTCCGAAGTC 60 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004 2 1 2 81 13 86424556 86425894 CAATCACAGGTGGATACCCT 59 86424494 86424512 TGTACATCTGACTGGCTGC 60 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000079935 3 1 6 80 5 150162917 150163390 TTGGATGTTCCAACCAGCT 60 150162855 150162874 CACTCCTCAATCCCTTCTCC 60 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 1 2 2 80 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824945 43824963 GCAGATTATGGGAGGATGC 58 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 2 2 2 86 10 91792311 91792330 GAATGCCAGTTCCAGTTCAG 59 91790872 91792262 TGTCTCCTTGAAGCCTCTC 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 2 3 3 80 7 68512166 68512184 TTCAAGACCACCTCCAGTC 59 68453071 68512122 ACTACTGATGGGACCTCCT 59 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000015718 2 1 2 80 19 17024135 17115062 GAAGCTAAGAAACTGAGGCT 58 17024074 17024094 ATAGAACTCGTCATCTTTGGG 58 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 3 3 3 80 3 134293428 134293446 ATCTAGCCGAGATGTACGC 59 134292326 134293388 CACAGACTCCTTTATAAAGCTCC 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 3 3 3 83 20 4532688 4532706 GCTATCAGTGCCATCAAGG 58 4532752 4533421 CTCTGGGTCCTTTAACTTCC 58 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834 3 1 2 88 3 119712143 119712161 CCCACCTTTACCAGTACCG 60 119712445 119718067 CCTGTACTCTGTATCCAGCTG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 3 8 10 80 10 87127520 87128308 AGGTACAGCAGAAAGGTCTG 60 87127459 87127480 ACCAATAATCTTGCCAATCTCC 59 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510 3 1 3 80 12 44072332 44072350 GATTACACCTGCTGGAAGC 59 44073512 44076178 TTTGCGATTCATCCATGAGG 59 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000088208 2 1 2 83 8 59223430 59226091 AGGACCGTGTTCTTAAGCA 59 59223365 59223383 TCCTTGCTGGTACTTCAGG 59 NA Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856 3 1 2 81 1 216812913 216812931 TTGCCTTCATTCGCTACTC 58 216810367 216812282 ATAGTGGAGGTTGAGACGG 59 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 3 2 2 81 7 55149589 55149609 CTTGTAACAGTACCCAGAGTG 58 55149650 55151644 TCACCTGATAACACTGATCTG 57 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000039999 2 1 3 86 11 35696795 35697066 GAGATTAAAGAGGCCTTGTCAG 59 35696730 35696749 TTCTGTCTTAGCCAGGTGTG 60 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932 1 2 3 80 8 128235617 128235636 CATGCATTCACCTTCCTTCG 60 128228842 128235577 CACAAATTCAGTTGTGTATGCC 59 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000088544 3 2 3 114 9 44490131 44491495 GACTACAGACTGTGAAGAAAGG 59 44493579 44493598 TGATCTTCAGGTCTAGGCTG 59 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000016740 2 1 2 88 1 244757839 244765385 CAAGGACAGGTGTAACGTG 59 244776021 244776039 AGACTTCACTGAGCTGTCG 60 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 3 3 5 81 X 159169769 159169789 CAGTATTACTGCGTGGATTGC 60 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 2 2 3 80 1 169455732 169455750 CTTTGTGAGCGATCTCAGG 58 169454328 169455690 CAGCTTCTCCTTATACTCCTG 57 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 2 3 3 80 8 22427972 22427991 TGTCCTTGACCATCCATCTG 60 22428033 22429336 TGACTGATAGCGTTTCTCCA 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 2 2 3 80 9 100561218 100561238 CAAATTTGGACAGGGCTAAGG 60 100560253 100561177 TCCTTAAAGCCCGATCTTCC 60 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000042227 1 1 2 131 9 45205608 45206412 CGTGTCTATGAACCAGATAGGA 59 45204262 45205520 CTTGTTAGTCTTGTAGGGTTCAC 59 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 1 1 1 60 1 280637486 280637505 TCTCAGCCTTACGGAAACTC 60 280639458 280639477 TTTGAATTTCGTTCTCCGGT 58 NA DesignNoJunction Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874 3 1 2 80 X 158366046 158374843 TGATTTCAGTTCATGGTGGTG 59 158374883 158374903 TCGTTCATTTGTAGATGCTCC 59 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 1 2 2 80 1 100835152 100835263 GCATACACTCCTGGAATACCT 59 100835304 100835323 TTGGACATCACATCTCCCAG 60 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 1 1 2 168 7 26690105 26690123 GCTTAGTCTTGCGTTCGAG 59 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA DesignNoJunction Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 3 1 1 135 1 100811778 100811796 GTTGAAGAGTCGGTGTGAG 58 100824887 100824906 GCCTCCAAAGTTAAACCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ddost ENSRNOG00000015079 ENSRNOT00000067228 3 1 1 80 5 156674748 156675343 CTGACTTGGTGGAGTATAGCA 59 156675385 156675403 GCTGAATGTCATCTCCGTC 58 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 3 2 2 80 19 24853471 24853865 TGCAGGATCCTATGGAGGT 60 24853906 24853927 TGAGTTTGACGTAATACTGCTG 59 NA Rattus norvegicus 81 Cd180 ENSRNOG00000010266 ENSRNOT00000013768 1 1 1 80 2 32828972 32830906 GGATTTAACCAGGTGCCAG 59 32830947 32830968 GTTAGCACAAGTGTCTCTAACC 59 NA Rattus norvegicus 81 F5 ENSRNOG00000057855 ENSRNOT00000079872 3 1 1 80 13 82490109 82493709 ACAATGCCAGATGTAACAGTC 59 82493751 82493769 AAACAATTCTGGTCCCGAG 58 NA Rattus norvegicus 81 Tax1bp3 ENSRNOG00000019357 ENSRNOT00000056460 2 1 1 148 10 59746509 59747128 AAACAGACAAGGTGAACGG 58 59747240 59747258 CTATGACAGCATGGACTGC 58 NA Rattus norvegicus 81 LOC685699 ENSRNOG00000043358 ENSRNOT00000065789 1 1 1 150 X 23468079 23468520 AGGCAAAGAAGTACTTCCAC 58 23465654 23465672 ATCCATTCCTTCAACCCTG 57 NA InUTR Rattus norvegicus 81 RGD1563441 ENSRNOG00000021540 ENSRNOT00000012061 2 1 1 153 10 55940906 55940924 GAGAGGATGGAGAGGACGA 60 55941040 55941159 CAGTAGAGCACATTGCTAGG 58 NA DesignRelaxed Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000090673 3 1 2 94 7 14363850 14364175 TCTGGTTTAGGCTTTGTCCA 59 14357849 14363798 GTTCCATATCCATAATCACAGGTG 60 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 1 2 2 80 3 51605329 51606644 GGTACACTCTTTGTTCAGCA 58 51605268 51605286 TCGGGAGGATTACTCAACG 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859 1 1 3 87 1 217617545 217618977 AGTCCCAGCAAGACTATGC 60 217613782 217613800 TCTTCAAAGGTGGATGCGT 60 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 3 2 2 80 1 37769417 37769436 TGGTTGCTCCATTTCTTCAG 59 37769476 37770331 AGATAAGTATCTCAGGAGCCAG 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000074685 2 1 2 81 13 36154971 36155958 TGTCTCAGGCTGATTTCGA 59 36154908 36154929 ATGAACAGCATCTCTTCATCAG 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 1 1 2 80 13 36117292 36119485 AGCACAAGCTTCTACATTCC 58 36117231 36117250 TTGATTGCTGTAGAAGGGAC 58 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124 3 1 2 141 3 79728840 79729748 GTAACGCAGATAGTTGGCAG 59 79729852 79729870 ATAATGCCCTGAGCCACTC 60 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000020955 1 1 2 96 9 42920761 42920779 GAAGTCCAGTCAGATCGGG 60 42918038 42920701 TGAAATGGGAACTTGGGCT 60 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000023610 1 1 2 80 1 211561748 211570030 AGGAATACGATGGCATCGA 59 211570074 211570092 TTTCCCAAATGGACTCGCT 60 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 2 3 3 120 20 5050802 5050820 CCTCCTGAGGAATCACTGC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516 1 2 5 80 13 34547580 34554356 CTTACTCTCCCAGCATGCT 59 34554399 34554418 CTGTAACTCCACGCAAAGAG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619 3 1 2 89 7 2556530 2556549 GAGTGACTCAGACATCTCCT 58 2555896 2556478 TCAGAACTGAGCCTGAAGG 59 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111 1 1 2 80 3 168031733 168033399 CAGACACTTACAAGGTGACG 59 168031672 168031690 GTTGAATCACACGAGTGGA 58 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152 2 1 2 84 1 71677459 71677478 ATAAGATCGAAGACGCTGGT 59 71675863 71677413 GCCTCCAACCCAATATTCTC 58 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015 2 1 2 81 2 211221389 211221408 CTAACTGCACGGATTACCAG 59 211220520 211221345 ACAAACTCCACCTTGTCCA 59 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964 3 1 2 120 7 70784467 70790929 GATTTCACAGGCAGAAGACC 59 70791012 70791030 ATGCTGGGAGATAAGTGGG 59 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 1 2 2 80 8 109263092 109263112 GGGATCTGTTTGGTAATTGCT 59 109263151 109288092 CTTGTACGACTATCTGTTCTGG 58 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000055038 3 1 3 89 3 176486527 176486545 TTACAAGCAGCAGTCAGAG 58 176487423 176487901 CCCTCTTTCACCTTCTCCT 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000013991 2 1 7 82 16 64053057 64053075 CCTCGTGATAACAGCTTCC 58 64053118 64055284 AGGTTATGTCTTTCGCTATGAG 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 1 2 7 80 16 64036976 64043375 CAGCTTCTACAAGCATCTTGG 59 64048169 64048188 ATGCCAGTAATTGTCAGCAC 59 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 1 2 2 80 8 132030093 132030743 CAAAGCAGATGAAGAACCAC 57 132030032 132030051 CACTTCTCATCTGAGGAACG 58 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202 1 1 2 82 12 51312309 51313641 CTGCAGAACAATTCTGCAG 57 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000014924 2 1 2 109 16 59197682 59219557 GATCCTAACACAAATTGAAGCC 58 59222871 59222892 GCGCAATATCAATAGGAAACAG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616 2 1 2 93 7 97967523 97994358 AGAGATGTCAGCAGTGAGG 59 97967448 97967466 TGAAGACAGCGTAGCACTC 60 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000077938 1 1 2 127 2 39455747 39455766 CAATGGGAAAGTTAACGGCT 59 39455856 39460696 ATACATGGCAATGGTGCAG 59 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598 3 1 2 80 2 39439338 39439356 GGGATGTTGAAAGAGTCCA 57 39439399 39444780 CACCTGACAACATGTATCGT 58 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487 3 1 2 102 10 95255128 95255149 TACTACAATCCCAGTGATTCCC 59 95250577 95255065 TGTTATGAGACCTGCTGGC 60 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 3 3 3 80 9 51469350 51469369 CTTGGCAGTACTGAAGTGGA 60 51469411 51479677 GTGTCTTGCAAACTTCAGCT 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000065212 2 1 3 89 9 51509555 51509922 CAGATGCTGGATCCAAGAC 58 51509974 51509993 ACTTGAGTTGTTCTCAACCG 59 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 1 2 2 72 12 52641971 52641989 GATGTGCTGTTGCAGTTCC 60 52641434 52641452 TGATGCCAGCAACAAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 2 1 1 145 16 47718542 47718561 GGAGCTGGACAACAAATACC 59 47723817 47723835 CATCTCCCAATTCTTGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000030891 1 1 2 116 12 48284179 48286155 CGGCTGTCAGATACAAAGTC 59 48284082 48284100 TTCTCCGCTTCTTCCTCTC 59 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 1 2 2 81 9 7027015 7029226 TGCCAATCTTAACCTGTGGT 60 7029270 7029288 AGTTGGGTATTTCAGGCGA 59 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 3 1 1 121 8 36910006 36910025 GATATCCTGACTTTGCCTGC 59 36910550 36910568 GATGAAGCGCACGTATTCC 60 NA DesignNoJunction Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086 1 1 4 80 8 39200851 39209301 CTGGTCAGGATATACAAGTTGC 59 39200792 39200811 CCAAAGTTTGCACCAAATCC 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 1 3 8 85 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 2 2 2 80 3 153235240 153245838 TGGGAGTAAGTTCCTTGGA 58 153235178 153235199 TCATTAGATCAATCCGAGACTG 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 3 2 2 80 2 210700542 210700560 AGCACCGTATGTTTGAGCT 60 210698777 210700500 TCTCAAGGGTCTCAAATCGAG 60 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756 1 1 2 80 16 72129659 72129680 CAGCCATTATGGTTGTTAAGCA 60 72129715 72133221 CTGATATGGATCCTTCACTAAACTC 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 1 1 8 60 20 4389461 4389479 CTCATCTGCTACTCCCAGG 59 4389003 4389021 TTCTACAGTCCACAGTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 2 7 8 99 20 4389611 4389834 CTGGACTACATCAATGAGACAC 59 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 3 2 8 86 20 4387144 4387162 AAGAACTTCCTTCGTGTGG 58 4382463 4387095 ACCAAAGAAGCTAGATTGCC 58 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000038084 1 1 2 80 8 21454252 21454271 GGATCCAATTCAGAGAACCC 58 21453174 21454211 AATAGCTGACCTCCTACTGTG 59 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 3 2 2 80 8 22800759 22800777 CATATCAGCATGCTTGGCC 60 22799851 22800719 GTATAAGCCACTTTCAGTTCTCG 60 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980 2 1 2 80 8 122036295 122038356 ACAGTCAGGTGAGAAATGCT 59 122038396 122038417 ACAAATCAATCCTCAGCTTCTC 59 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485 1 1 2 81 20 50487163 50516370 ATTCCAAGATGCTACAACTGC 59 50487102 50487120 AATGGCACTTCTTTGGCTG 59 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485 2 1 2 82 20 50516427 50517836 AAGGCAGATAGGTGGAGAC 59 50516363 50516382 CTTGGAATCATCCTGGACTC 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951 3 1 4 81 2 53157884 53159889 CAGCATGTGAAGAAGATTTCC 58 53157823 53157844 ACAAATAGCATCACTGCTACTC 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000026418 2 1 2 80 16 74344571 74345948 GTCAAGATCGTTGCCTCCT 60 74344509 74344530 CATTCTGATCAGGATGAACAGC 60 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787 3 1 2 111 3 71863401 71863420 GTACAGAAGGGTGACTACGT 59 71854420 71863328 CATCATAGTCCCATTGGCTG 59 NA Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 2 2 2 80 8 63146094 63146114 GTTCCTTACAGGGTACTACTC 57 63143297 63146055 TTATAGTTCCTCCTTCTGTTGC 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000057078 3 1 2 98 20 49325078 49325099 GATCTTCTTGCATCAGCTCAG 59 49332314 49332332 CTCAACTGCATCCTTGCAC 60 NA Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 1 1 1 77 16 49186353 49186371 CAGTACCTCAGAGCTCTGC 60 49186807 49186825 GTAGTTGGCAAACTCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 1 3 3 83 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155171 155189 AAAGACAGCCAAAGGTCCA 60 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 1 1 1 68 16 75428801 75428819 TCTGTCTCCTTTGAAGGCC 59 75429433 75429451 CTGCTTTAATGGCCATCCT 58 NA DesignNoJunction Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891 2 1 2 91 16 71019132 71020121 GAACCTAAATGGTGGAGCC 58 71021819 71021837 CTCCATCTTGCTGCTTACG 59 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025 1 1 2 95 5 155702787 155702807 CTATTACTCCAGAGACTGCTG 57 155691742 155702732 CATTCTTTAGGCCTTTCTGTG 57 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 3 2 2 81 5 150514397 150514415 CTACAGGATGTTGTGCAGG 58 150514194 150514352 AGCCAAAGGAGTAGACCTG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026546 1 1 4 80 16 81666027 81666046 TAAGAGGGCGATCAAATGGT 59 81666089 81674356 CGGACATAACGCTTCACTG 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516 2 1 2 81 3 153582303 153582322 TGACTATGAGTCACGGACAG 59 153582364 153582594 CACCTTCCTCGTGTTATTGAC 59 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 1 2 2 81 3 175887065 176040690 CGTCATCCAGGTTAACACCT 60 176040734 176040752 TTTGTTGGCAATCACGGTG 60 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 1 2 2 80 3 173896377 173896398 TCAACTTCAGGATCAGAATCAG 58 173894896 173896336 AGTCTCCTCCTTTGTTGGT 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 2 3 3 91 16 69877425 69877443 CCGGAGACTGGTATTACCG 59 69875930 69877370 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000043170 1 1 4 83 16 81897672 81979867 CAGCCTCAGATGAAATCATGC 60 81897609 81897627 AAGCAAAGCGCTTCTTCAG 60 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 1 2 2 80 3 151347875 151349518 TGTGTTTAAGGATCGCTGG 58 151349559 151349580 CAGAATTGTTCAATCTGCATGG 59 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736 1 1 2 162 16 81493530 81494709 GCAACAGTATCAAAGTGCTC 58 81494921 81496126 TTCATACAGTTTGTCCAGCT 57 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736 3 1 2 163 16 81493529 81494708 AGCAACAGTATCAAAGTGCT 58 81494921 81496126 TTCATACAGTTTGTCCAGCT 57 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000067508 3 1 2 121 16 81351453 81351471 TTGTCTGTCACAAACTCGC 59 81349438 81349878 TTTCTTCGCAAGTTGCCTG 59 NA Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 1 2 2 83 16 82987071 82988034 CATCATTTACAGGATTGTACAGGAG 60 82987012 82987034 GATCGTTTCTTAGATGCCTTAGG 59 NA Rattus norvegicus 81 U6 ENSRNOG00000054205 ENSRNOT00000079474 3 1 1 60 2 48414254 48414274 CATATTGGGACAATACAGGGA 57 48414214 48414234 GAATTTGCATGTTGTCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008074.1 ENSRNOG00000054928 ENSRNOT00000086022 3 1 1 60 2 42001967 42001986 ATTGAGAGCCCTTTGAAGGT 59 42001926 42001947 TTTCCAATAGTCTTAGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000054318 ENSRNOT00000083725 3 1 1 60 2 210843416 210843436 CAACAATCCAATGATTCTGCC 58 210843455 210843476 AAATGGACTGGTTTCAAAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052672 ENSRNOT00000085327 3 1 1 60 2 124304180 124304199 CTACCCTGTGTACACCTCAG 59 124304139 124304162 GTCTACTCATTCACAATACAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056744 ENSRNOT00000092087 1 1 1 60 5 137274087 137274108 AACGATACAGACATTAGCATGG 59 137274129 137274147 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058326 ENSRNOT00000077886 2 1 1 60 8 26093345 26093365 GGATACAGAAAGACCTGTTCC 58 26093386 26093405 CAGACTTTGGAGGAGTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057167 ENSRNOT00000088951 2 1 1 60 5 4665268 4665289 CCGAAGTTCTAGGCTTATAGTG 58 4665229 4665250 TCATGCTGAACTTATTGTGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025288.1 ENSRNOG00000047260 ENSRNOT00000071611 3 1 1 64 16 31624922 31624942 GACTGTAGAGATAGCTCAGTG 57 31624878 31624896 GGGATCGAACTCACATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058536 ENSRNOT00000080027 2 1 1 60 8 67905423 67905445 GGAACGATACAGAGAAGATTAGC 59 67905465 67905483 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053492 ENSRNOT00000089036 2 1 1 62 5 70726345 70726363 TACAGGTATGGCTGCTGTG 60 70726388 70726407 CTGAGGTGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057119 ENSRNOT00000090670 3 1 1 60 8 68024854 68024876 GATACAGAGAAGATTAGCATGGC 59 68024896 68024914 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 2 1 1 60 2 157854823 157854841 AGACGCTATCAGAAGTCCA 58 157854865 157854901 AGTCCAGATGCTGAAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056734 ENSRNOT00000082727 1 1 1 60 2 74322863 74322881 AGACGCTCTGACTATGCTC 59 74322903 74322923 GTTAGGCCATTGATCATTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056349 ENSRNOT00000089951 1 1 1 60 2 198772344 198772365 GAGTTGGAATAGGAGCTTTCTC 59 198772305 198772323 GGAGGTACTGCAGTACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034426.1 ENSRNOG00000050789 ENSRNOT00000075335 2 1 1 60 11 71094563 71094583 ATTAGTGATCAAGGTGGGAGG 59 71094605 71094623 CAAGACTACCAGCCTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053500 ENSRNOT00000091501 1 1 1 68 5 13087032 13087050 TGTATGGGCATCTGTGCTC 60 13086982 13087003 TGAATTTCTATAGGGCTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044300 ENSRNOT00000069567 2 1 1 60 16 60060618 60060640 CCTGAACATACATGATCTCACAC 59 60060580 60060600 GAACTAACCAAGCCTAACTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060900 ENSRNOT00000089992 3 1 1 60 X 152800986 152801005 GGCTGTCATATCTGGTACCT 59 152801027 152801046 TTAGCCACCTAGATCAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060841 ENSRNOT00000085575 2 1 1 60 8 87344520 87344541 TATGTGTCAGTAGGTGACAGAG 59 87344481 87344500 ACATGTCAGAACACCAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055692 ENSRNOT00000086018 3 1 1 74 16 56611597 56611618 GTCAATGAGGTTTATTCAAGGC 58 56611653 56611671 ATTCACCAGGGACATCGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000052441 ENSRNOT00000080180 2 1 1 60 8 72701228 72701246 AGCAGTTCTTTCCTGTTGG 58 72701186 72701210 GATGCCAGATAGTGAATTTCTATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025366.1 ENSRNOG00000045619 ENSRNOT00000074539 1 1 1 61 16 35524612 35524630 GACTCCTAACAGCAGGAGC 60 35524655 35524673 GAAAGGGATCCAAAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053499 ENSRNOT00000088013 3 1 1 60 2 50578051 50578075 CTTGTCTCTAGAAACATTAGCAGTG 60 50578093 50578111 CTGCTACCTTCTGATGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057320 ENSRNOT00000092062 3 1 1 60 1 55623896 55623915 CAGTTGCAGATTGAACTCCT 58 55623855 55623875 CCAATCAAGTGCAGTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050725 ENSRNOT00000074161 2 1 1 60 16 26999988 27000007 TTGAATGTGAGGTTAGGTGG 58 26999947 26999965 CATTCCTGTGAGGCTTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050725 ENSRNOT00000074161 3 1 1 60 16 26999987 27000007 TTGAATGTGAGGTTAGGTGGA 59 26999947 26999965 CATTCCTGTGAGGCTTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055540 ENSRNOT00000084161 1 1 1 60 16 49355151 49355172 TGCTAAACTTGGAACGATACAG 59 49355192 49355211 TTTACGTGTCATCCTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053117 ENSRNOT00000083416 3 1 1 66 X 154843081 154843099 TGTGTCTGCTTTGTCACAC 59 154843033 154843055 ACTAAGCATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041834 ENSRNOT00000063587 3 1 1 68 6 44933694 44933714 GAAGTCAAATGGTCTTGTCTG 57 44933744 44933762 TTTCCTACCCAAACACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058813 ENSRNOT00000090286 1 1 1 60 6 75106676 75106697 CAGTGGAGATAACACAATCACC 59 75106718 75106736 GAGTGCAATGGATAAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058813 ENSRNOT00000090286 3 1 1 60 6 75106677 75106697 AGTGGAGATAACACAATCACC 58 75106718 75106737 TGAGTGCAATGGATAAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021704.1 ENSRNOG00000058096 ENSRNOT00000082869 2 1 1 60 13 86670890 86670909 CATCACAGACCAGAGTTTGG 59 86667408 86667426 TCTGTGGCAGTTTAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045293 ENSRNOT00000070560 2 1 1 60 6 114013170 114013188 GGTCAGGCATGGTTAACAC 59 114013128 114013147 GCATACAGTCAAAGTTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061686 ENSRNOT00000088324 3 1 1 76 X 157034124 157034142 CTGACTTTCCTCATGGGAG 57 157034066 157034085 AGGTAACAGTGAATTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055584 ENSRNOT00000080550 3 1 1 60 2 213207904 213207922 TAGAGGAGGACCGAATAGC 58 213207862 213207882 CTTTGGGCAAATCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072061.1 ENSRNOG00000050797 ENSRNOT00000075044 2 1 1 68 1 263589023 263589041 GAGATCCAGCTGTAAGGCA 59 263588973 263588992 ATGGTACCACCCACAATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053669 ENSRNOT00000077361 1 1 1 60 2 182583931 182583950 CAAATAGAACCACCTTCCCT 57 182583972 182583991 CTGCTTCCCATAACTTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061829 ENSRNOT00000083749 2 1 1 60 6 95871828 95871846 CTCGGTAGAAGAGGACGAC 59 95871786 95871805 TATACCCTTGACCGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056300 ENSRNOT00000085473 3 1 1 75 X 39345895 39345913 AGAGGCATTGCAGGTATGG 60 39345838 39345859 CTAAGCATAGACAATGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059638 ENSRNOT00000090904 2 1 1 60 3 139671390 139671409 ATAGGCTTGATTCTGCTGAC 58 139671349 139671367 GATGAATGCAGAGTGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059722 ENSRNOT00000089002 2 1 1 60 2 409819 409840 TGATCATGGACACTATGAACAC 58 409780 409799 AGATAGGTGTAGTCCAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000052635 ENSRNOT00000081700 3 1 1 60 X 13904804 13904827 CCTCATTAGAATGCATCCATATCC 59 13904767 13904785 TTCAACGTAGCACACTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000052615 ENSRNOT00000081976 3 1 1 60 3 11869617 11869636 CTGTCCTAGGATGACAAAGG 57 11869659 11869677 AGTCAATGCCATCACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061790 ENSRNOT00000090684 2 1 1 61 17 30252464 30252485 AAGCGAAAGGCTATGTTTACAC 60 30252502 30252525 GGCTACTAATCATTCAGATGTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059732 ENSRNOT00000078483 1 1 1 60 3 51437224 51437242 TTACATGTGCGTCAGTAGG 57 51437182 51437203 TCAGAACACTGAGAATAGACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059732 ENSRNOT00000078483 2 1 1 60 3 51437223 51437241 TACATGTGCGTCAGTAGGT 59 51437181 51437203 GTCAGAACACTGAGAATAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060759 ENSRNOT00000081187 2 1 1 61 X 40583960 40583979 TGTGTCAATAGGTGACAGAG 57 40584003 40584021 TGCATAGGTCAGAACACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.1 ENSRNOG00000046060 ENSRNOT00000071539 2 1 1 60 9 45896782 45896800 CCTTTAATCCCTCCCACCC 60 45896740 45896758 CACATTCCACAGGTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000056420 ENSRNOT00000084307 2 1 1 64 2 260115728 260115747 ATGAGCTGGCATGTATTCTG 58 260115683 260115707 CAGAGTAATTCTAGAGCTAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.2 ENSRNOG00000056545 ENSRNOT00000087849 2 1 1 60 2 144807358 144807378 AGATTGATGCTGAGGATTCAC 58 144807318 144807336 TCCTGTTCACTTGACACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026912.1 ENSRNOG00000054922 ENSRNOT00000089748 1 1 1 60 17 4697833 4697855 GTCTATACACATATGACCATCGG 59 4697793 4697816 GGGAAATTGTAGAGAAGTTCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07073392.1 ENSRNOG00000051478 ENSRNOT00000085294 3 1 1 114 8 46757404 46757422 AAGGTACAAACCAAGGCAG 58 46757098 46757116 CCCGTCATTTCTACTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010460.1 ENSRNOG00000061443 ENSRNOT00000087798 1 1 1 80 2 136828540 136828561 ACATGATCCCGGTATCTCAG 59 136828604 136828622 GTTTCTTTCCCTCCAGCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058336 ENSRNOT00000081371 2 1 1 71 X 31969634 31969652 ATGGGAACAGTACAGAGGA 57 31969684 31969705 GAGGACAACTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055940 ENSRNOT00000086182 2 1 1 60 16 24545285 24545303 ACATGTGTCACTAGGTGGC 60 24545327 24545345 CAGGTCAGAACACTGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051944 ENSRNOT00000082801 1 1 1 60 X 76209972 76209994 GATACAGAGAAGATTAGCATGGC 59 76209934 76209955 GAATGCTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000060333 ENSRNOT00000084476 2 1 1 66 16 51963424 51963443 ATCATAGCTCAACACTGCTC 58 51963377 51963397 CTCCTGTTAGACCATCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120750.1 ENSRNOG00000050522 ENSRNOT00000075001 3 1 1 60 7 123815627 123815645 CCTGTTCTTGGATCATGGC 59 123815585 123815604 GGCACAGAGATGTTAAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060944.1 ENSRNOG00000057963 ENSRNOT00000087546 2 1 1 92 4 101531417 101531823 TGGATCCAGGAAACCAGTG 59 101531879 101531897 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055351 ENSRNOT00000089531 3 1 1 60 1 277058221 277058239 TAGGTGGCAAAGAGGAGAG 58 277058179 277058197 GAACGTCAGATGGTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052857 ENSRNOT00000085672 2 1 1 98 16 11921142 11921161 ATAGAGCAGGTACAGCATGG 59 11921222 11921240 TTACCCTACAGGTGGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053887 ENSRNOT00000082467 2 1 1 60 16 37180901 37180920 AATTCAATGGCTGAGGTGAG 58 37180860 37180881 GTGTAGTCTGAATTGGGTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026489.1 ENSRNOG00000050405 ENSRNOT00000073064 1 1 1 60 16 78601627 78601646 CAGGTGGCTCATTTAGAAGC 59 78601669 78601687 GAAAGCCCATGTATAGGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057611 ENSRNOT00000081795 3 1 1 60 X 38392587 38392607 TGATCTAGATAGCTAGGCAGG 58 38392629 38392647 TAGAAGGAGCAAACAAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057232 ENSRNOT00000088949 3 1 1 61 10 65227698 65227717 TGGATGAGTAGGTGACAGAG 58 65227740 65227759 TTCATAGGACAGAACACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA12 ENSRNOG00000052607 ENSRNOT00000085928 3 1 1 60 1 263890792 263890812 TCCTGGTGCATTTGTTAAGTG 59 263890752 263890774 CTCCTACATAATGTATGTGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057233 ENSRNOT00000081417 1 1 1 60 10 57854661 57854680 CAGTAGGTGGCAGAGAAGAG 60 57854620 57854640 GATGTCCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057233 ENSRNOT00000081417 3 1 1 60 10 57854654 57854672 GGCAGAGAAGAGAAAGCCT 59 57854612 57854633 ATCATTCAGATGTCCATAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057414 ENSRNOT00000077279 2 1 1 78 1 267487613 267487631 GCTCAGTAGTGCACATACG 58 267487553 267487571 ATGGATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036194 ENSRNOT00000054317 3 1 1 60 8 27933608 27933628 CTGATCTTGGAAGCTAAGCAG 59 27933568 27933586 CTTGGTATTCCCAGGTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058140 ENSRNOT00000083694 1 1 1 69 16 3113683 3113701 GCTCAGTTCCAACTCACAC 59 3113734 3113752 ATGTTATCCTTGCACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055436 ENSRNOT00000090856 1 1 1 74 2 8987437 8987455 TATCCATTGCACTCTGGCT 59 8987381 8987402 CACTGCCACAAATTATGTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029272.1 ENSRNOG00000047694 ENSRNOT00000074504 3 1 1 61 10 19583216 19583234 ACTATGTAGACCAGGCTGG 58 19583173 19583191 GTAGTCTGGAAGCAGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060567 ENSRNOT00000079613 3 1 1 64 10 94006627 94006645 AGAGAAGATTAGCATGGCC 57 94006581 94006600 TCTCTGATTGAACGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054705 ENSRNOT00000080634 2 1 1 62 6 11086915 11086933 TATGCGTCAGTAGATGGCA 59 11086871 11086889 TCACAGGTCAGAACACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039498.1 ENSRNOG00000060786 ENSRNOT00000087119 3 1 1 60 X 78565440 78565461 TCAACATCACACTACGTATCCT 59 78565480 78565500 GTGTAGATACAAGGAAGCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051840 ENSRNOT00000079205 2 1 1 81 4 12183595 12183613 GTACTCACTTCAGCAGCAC 59 12183656 12183676 TGCATGTTATCCTTGTACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019341.1 ENSRNOG00000058766 ENSRNOT00000085607 2 1 1 70 15 100348707 100348725 AGCTAGAGGCTGACAACTG 59 100348655 100348673 GTATTTGCACATGGGTGCC 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 U4 ENSRNOG00000061173 ENSRNOT00000078794 1 1 1 60 10 25895179 25895197 AATGAGGTTTATCCGAGGC 57 25895220 25895239 GCAAGTACTCTATGCTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132671.1 ENSRNOG00000055680 ENSRNOT00000089745 3 1 1 83 8 36720616 36720634 CTGGTACATGTGCAGTGTG 59 36719004 36720570 TTGTCTGGACCATAGACGAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057916 ENSRNOT00000080903 2 1 1 60 2 174185095 174185118 CACTGTTATCAGTAGATAGCAGAG 59 174185133 174185155 AGGTCAGAGTACTAAGCTAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006451.1 ENSRNOG00000029732 ENSRNOT00000050860 1 1 1 60 1 234183525 234183544 CAACAACCTCTTCATTGACC 57 234183566 234183585 ATGGGTAGAGTCATACTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142421.1 ENSRNOG00000056712 ENSRNOT00000084430 2 1 1 83 1 32192105 32192123 CTTTCAGACTGCATGTCCA 58 32192035 32192061 CTGATCACTTCAGCTATAGTAACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056505 ENSRNOT00000086109 3 1 1 62 4 89366335 89366353 AAATGCAAACACAGTGCCT 59 89366379 89366397 AGTGTCAACGTAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051914 ENSRNOT00000091445 3 1 1 60 4 136165610 136165633 CTGTGTTACATGAGAATCAGTAGG 59 136165651 136165670 CATGGATGAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit2 ENSRNOG00000036604 ENSRNOT00000054757 2 1 1 82 1 252894864 252897538 CACAGCAGTCATGAGTACAG 58 252897583 252897601 TCAGGTTCCAGGTGAAGTG 59 Novel InUTR Rattus norvegicus 81 AABR07051374.1 ENSRNOG00000046993 ENSRNOT00000072640 3 1 1 60 3 6980035 6980053 TTACCCTCTGTACATCCGA 57 6979993 6980013 CACCATGTAGTGGAACTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058065 ENSRNOT00000086207 3 1 1 60 4 130156056 130156075 TCAATAGGAGGCAGAGAAGG 59 130156098 130156116 CAGGTGAGAACACTGAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052849 ENSRNOT00000086526 3 1 1 62 4 102979220 102979242 GTATCAGTGGTGTATCACATGTG 59 102979180 102979199 GGGCAGACATAGTGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052588 ENSRNOT00000078490 3 1 1 60 10 7630994 7631016 GATACAGAGAAGATTAGCATGGC 59 7630956 7630974 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059527 ENSRNOT00000090012 3 1 1 61 9 16072223 16072244 GGTACAGAGAAGATTAGCATGG 59 16072183 16072203 GGAACGCTTTACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051400 ENSRNOT00000081216 1 1 1 60 1 31443479 31443497 TCTAAGAGTGGTGCCTCCT 60 31443520 31443539 GGAAACTCACCTCTCCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067024.1 ENSRNOG00000060699 ENSRNOT00000082814 2 1 1 80 9 26727325 26728715 CAACTGTACTTTCAAGCCCAC 60 26727265 26727285 GCTTGACAAACCTTCTGTGAG 60 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000061702 ENSRNOT00000082626 2 1 1 60 4 35850016 35850035 TTCATGTTCATTGTTGCCCT 58 35849975 35849994 CTCGTCTGTTTCCATTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000059571 ENSRNOT00000078656 2 1 1 60 4 171047820 171047840 AGAAGTGTGCTACATTGAACC 59 171047780 171047799 AGAGGCAAGCTCTACTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027496.1 ENSRNOG00000021752 ENSRNOT00000039482 2 1 1 94 17 34225082 34225100 GTCATGGAGGTTGGAATGC 59 34225005 34225024 AAGGCACATTTGATGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053414 ENSRNOT00000089256 1 1 1 60 4 168916190 168916208 CTGTTGTCATTTGCACCAG 58 168916230 168916250 AACACTGAGGATAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056698 ENSRNOT00000084411 2 1 1 60 10 80867999 80868018 CTCATAACAAGCTCTCAGGG 58 80867958 80867979 CAGAATCACTGTGTCTTTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035428.1 ENSRNOG00000056768 ENSRNOT00000087860 3 1 1 93 12 14167267 14168795 TATTCAAGTTCCTGGCTTGGA 60 14167194 14167212 ATCTCCACAGCAGTTCCAG 59 Novel Rattus norvegicus 81 AABR07034098.1 ENSRNOG00000052255 ENSRNOT00000089097 1 1 1 83 11 52408702 52408721 AAGTCATGAGCCAAATGGAC 59 52408635 52408656 CATGAGGAGCGAAGAAGGT 60 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 2 1 1 65 1 165559995 165560014 TAAAGTCAGCAGCTCAAGGA 59 165559947 165559967 TAGGTCCTCTTCCCTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000052505 ENSRNOT00000087339 3 1 1 60 7 140036782 140036804 TCCAGGGACTAAACTACTATCCA 60 140036744 140036762 GCAGTTGTAGCCATGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065768.3 ENSRNOG00000055620 ENSRNOT00000079087 2 1 1 109 6 140407174 140407276 TGACATTTCCAAGCTGTGC 59 140407083 140407101 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060631 ENSRNOT00000080432 3 1 1 62 1 147139461 147139480 TGGAATGATACAGATTGGCA 57 147139418 147139437 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000057429 ENSRNOT00000085406 3 1 1 60 3 174961060 174961080 CCTGATCTCATCTGATCTTGG 58 174961020 174961040 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056514 ENSRNOT00000077534 3 1 1 78 17 9247763 9247781 TAGAGGCATCGTAGGTGTG 59 9247703 9247722 GAACACTGAGGTAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069490.1 ENSRNOG00000039627 ENSRNOT00000060753 2 1 1 60 8 24083725 24083747 CTGCACTCTTTCGATTAAGAGTC 60 24083764 24083785 ACTTGTATTCCACGTTCATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041877 ENSRNOT00000063630 1 1 1 66 X 10380741 10380759 ATCACACTGAACATGCCCA 60 10380789 10380807 GTACTTAGCTAGGCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.2 ENSRNOG00000048974 ENSRNOT00000071198 2 1 1 60 2 231874976 231874995 TCCCTTCCACTTTAACATGG 58 231875018 231875036 AACATGGCAGCACTTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052648 ENSRNOT00000084681 3 1 1 60 12 49959584 49959606 GGAACGATACAGAGAAGATTAGC 59 49959546 49959564 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 1 2 4 80 19 17440622 17440643 CAGACTACGTTGAAGTAGACAG 58 17439757 17440584 AGTAGTAAACAACAGACTCACC 58 Novel Rattus norvegicus 81 AABR07013412.1 ENSRNOG00000055035 ENSRNOT00000089472 1 1 1 115 2 236149835 236149867 AGAAGTTTCAAGGTTGTCGT 58 236149739 236149757 AATCTTTGAGTCTCCGCAC 58 Novel Rattus norvegicus 81 AABR07027878.1 ENSRNOG00000052387 ENSRNOT00000091880 3 1 1 83 17 48001073 48001091 GTCTTTCCATCTGCACCAC 59 48001005 48001028 GTCTGAGCTTTGTAAGAGTGG 59 Novel Rattus norvegicus 81 AABR07028150.1 ENSRNOG00000060132 ENSRNOT00000089527 1 1 1 92 17 57864978 57865517 AGGACCAGACTTCCATAATGG 59 57865571 57865589 AGCCATTCTCATGGTCTCC 59 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 1 2 2 80 14 83884380 83885384 AAAGTGAACTACGTCCCGT 59 83884318 83884336 GGAGTAGCAGAAGGAAGGT 58 Novel Rattus norvegicus 81 AABR07035289.1 ENSRNOG00000045540 ENSRNOT00000074232 2 1 1 60 12 9730699 9730718 CCTTGAACTCAGAGATGCAC 59 9730740 9730759 GCATAGGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054290 ENSRNOT00000088250 1 1 1 60 2 38358872 38358893 ATACAGAGAAGATTAGCATGGC 58 38358833 38358852 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 1 1 1 69 16 20108506 20108524 ATTTACGGAAAGTCAGGGC 58 20108450 20108474 CACAGGTTTCTAGTCTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000074856,ENSRNOT00000057756 1 3 5 80 6 114783569 114783587 CTGGACCATCTGGAGTCTG 59 114780449 114783528 AGATAAACTGGAGGAACCTCTG 59 Novel Rattus norvegicus 81 Rn60_20_0041.1 ENSRNOG00000056193 ENSRNOT00000089398 1 1 1 92 20 1980947 1982945 GCAAGAAACAGAGCAATCTC 58 1982997 1983018 CATTAGGATACCGATCATTGGA 58 Novel Rattus norvegicus 81 AABR07055789.1 ENSRNOG00000008398 ENSRNOT00000011102 1 1 1 80 7 10068394 10068413 ATGGATTGCCAGAAATCCTC 58 10064930 10068351 AACCTTCGAACCACATCCT 59 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000060481 ENSRNOT00000083805 3 1 1 60 1 116978573 116978594 CAACAGAAAGTCAAGAACAGGA 59 116978534 116978555 CTCAGCCTAATCCTATTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029842.1 ENSRNOG00000050824 ENSRNOT00000070824 3 1 1 60 10 54769663 54769685 CTCAGACTGACTCATGTAGATCC 60 54769702 54769723 AAGAGTGCCAACTACATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061894 ENSRNOT00000091874 3 1 1 60 2 102458346 102458364 CTAGAAGCATTGCAGCACC 59 102458304 102458324 AGACATTACTTCTTCTCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 2 2 2 80 9 4272695 4276185 TGGACAAACAACTGTAAGTTCC 59 4276222 4276244 CATCCTGTAGAAGTGGTAGTAGG 60 Novel Rattus norvegicus 81 AABR07054362.1 ENSRNOG00000050899 ENSRNOT00000043950 1 1 1 81 3 149960934 149960956 ACCTACAGAAGGAGTGCTG 59 149960871 149960889 TAAACTGGAACTCCGTTGC 58 Novel Rattus norvegicus 81 AC114363.1 ENSRNOG00000057545 ENSRNOT00000090574 1 1 1 81 3 8432152 8432172 TCACTCCTGGAATACTGACAC 59 8432090 8432109 GAACAGGGCTCCCTTAGTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055989 ENSRNOT00000083142 3 1 1 80 10 58429104 58429125 GGTGTGACTGCTATATCATGTG 59 58429045 58429069 GTAGGTCAGAATAGTGAGTATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 3 1 1 67 8 43835772 43835792 CCTATGTGTCCATTGTCTGGT 60 43835821 43835842 TGTCTGGAAAGCTCTGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059646 ENSRNOT00000090354 3 1 1 60 14 20034959 20034977 TGTCACATGTGCATCAAGG 59 20034917 20034941 GAACACTGAATGTAGACATAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d8b ENSRNOG00000054011 ENSRNOT00000080072 3 1 1 80 X 110944173 110944191 CGAGACCTGGTTGTAAGAG 57 110944234 110944719 CATGTCATTAACAGCACCTG 57 Novel Rattus norvegicus 81 AABR07063290.1 ENSRNOG00000048177 ENSRNOT00000071311 1 1 1 113 6 27210114 27210134 TGGCCTTAATGATGAAGGG 57 27210211 27210229 GAGCAGAGATCTATGCACG 58 Novel Rattus norvegicus 81 AABR07016950.2 ENSRNOG00000056911 ENSRNOT00000082029 3 1 1 81 15 5428506 5428525 TTTGTGAACTGCAAGTTCCC 59 5428442 5428467 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 AABR07036167.1 ENSRNOG00000045927 ENSRNOT00000074199 2 1 1 60 12 35318519 35318538 GTCCATTCTCAAGCTCACTG 59 35318478 35318496 TCCCTATGACCATATGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054629 ENSRNOT00000077811 3 1 1 60 10 46193741 46193759 GACCTCTACGGTTTCCCTG 60 46193699 46193722 GTCCTCAACTACTACAAACTATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011708.1 ENSRNOG00000048557 ENSRNOT00000071263 1 1 1 69 2 166850505 166850523 GAGATCCAGCTGTAAGGCA 59 166850555 166850574 GATGTTACTACCCACAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055988 ENSRNOT00000082502 3 1 1 60 3 158727411 158727431 CACATGAGCATAAGTAGGTGG 59 158727451 158727471 ATCAGAACACAGAGTGTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054372 ENSRNOT00000080081 1 1 1 60 14 100762519 100762540 AAGCAAGATCATAAGAAGCTGG 59 100762556 100762579 CTTACTAGCTGTTCATACTGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000054649 ENSRNOT00000092055 2 1 1 65 10 15536676 15536694 CATGGGATCTCCAACTGCA 60 15536629 15536647 ACTGCTATGATGACCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057955 ENSRNOT00000085138 2 1 1 60 10 89570415 89570433 AGTTGGAATAGGAGCTTGC 58 89570457 89570475 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059915 ENSRNOT00000084224 2 1 1 60 14 11184262 11184283 TCTTTACAGGTAGTTAGCAGAG 57 11184304 11184322 TTGTTTGAAGGTGCCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052329 ENSRNOT00000087438 1 1 1 60 3 159167264 159167286 GAACTGTGATATCTCTGAGTGTG 59 159167226 159167245 GGTCAAGTTTCCAAATCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052329 ENSRNOT00000087438 2 1 1 60 3 159167264 159167285 AACTGTGATATCTCTGAGTGTG 58 159167225 159167245 AGGTCAAGTTTCCAAATCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059477 ENSRNOT00000081659 3 1 1 60 17 72214162 72214180 TCAGTAGGTGGATGAGAGG 58 72214202 72214222 GATGTCCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Eif6-ps1 ENSRNOG00000058513 ENSRNOT00000083783 3 1 1 60 14 86979984 86980003 GTCGTTCGAGAACAACTGTG 60 86979943 86979963 CAGGGAGTAGGTGTTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054873 ENSRNOT00000082543 2 1 1 60 12 33875888 33875909 AATCGGGAAATAGACAGAGGAG 60 33875930 33875948 GTGAATTTGCATGCCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060346 ENSRNOT00000088659 1 1 1 60 14 112298822 112298843 ACAGATGTAGTCTCTGAATGGT 59 112298783 112298801 TGAGTGTGGCAGGATAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000052898 ENSRNOT00000083117 3 1 1 60 14 21268223 21268242 ACTTTGCTGGAGCATAACTG 59 21268182 21268201 AGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134632.1 ENSRNOG00000046877 ENSRNOT00000071225 1 1 1 68 12 47458489 47458507 CTCTGTAGATCAGGCTGGC 60 47458439 47458457 TTTAGTCCCAGCACTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057704 ENSRNOT00000086024 1 1 1 60 2 227587043 227587067 GACAACAGACATATAGTTAAGGCAC 60 227587007 227587027 AAACCACAGTGGTTAGATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027267.1 ENSRNOG00000060618 ENSRNOT00000088725 1 1 1 80 17 22026644 22028937 GGCACAGAAAGACCAAACC 59 22028981 22028999 GTTTAGCTCTCCCTCCCAC 60 Novel Rattus norvegicus 81 SCARNA4 ENSRNOG00000052086 ENSRNOT00000077866 3 1 1 60 3 129328782 129328803 AAGACTTTGCTGATACACTCCT 60 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012072.1 ENSRNOG00000047458 ENSRNOT00000072115 2 1 1 78 2 184826994 184827012 CAGCAATGAATGCTTCAGG 57 184826934 184826954 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056439 ENSRNOT00000079129 1 1 1 60 1 53939998 53940016 ACAGTGCAGAGATTAGCCT 58 53939956 53939975 GGAACACTCCAGGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059570 ENSRNOT00000078833 2 1 1 60 17 43922812 43922833 ATACAGAGAAGATTAGCATGGC 58 43922854 43922872 CGCGTTCACGGAATTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004101.1 ENSRNOG00000049002 ENSRNOT00000071114 1 1 1 65 1 125082651 125082669 TTATGACTTGCTCCTCCGG 59 125082604 125082622 GAATGCTCTAGGCGAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 2 2 2 85 4 114818607 114818766 TGAACTCTGGTGGTTCTGG 59 114818540 114818559 TGAGTTTAGCTCTTCGGTGG 60 Novel Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 2 1 1 67 12 53933 54666 GTAAGTTCAGCTCCCAGAGG 60 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059290 ENSRNOT00000087224 2 1 1 65 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951564 186951584 ATTCAGATGTTCACAGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058387 ENSRNOT00000087844 2 1 1 60 1 254519554 254519572 CACGTGTTGGTCATAGGTG 59 254519593 254519614 GGTCAGAACACTGAGAATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD12 ENSRNOG00000056200 ENSRNOT00000085589 2 1 1 60 3 163815550 163815570 GCTGGTGTAAATGATGACCTC 59 163815590 163815610 TTTAAGACATCAGCACTGTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044786 ENSRNOT00000070053 3 1 1 65 2 166385289 166385307 TTATACGCCCTGATCATGC 58 166385242 166385260 CAATTCAGATGCAGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054983.1 ENSRNOG00000056555 ENSRNOT00000078261 3 1 1 83 3 177397944 177397963 CTTTGCTGGATCCTTCACAG 59 177398008 177398330 AATTGTAGCCTACAGCAGTG 58 Novel Rattus norvegicus 81 AABR07027811.4 ENSRNOG00000053845 ENSRNOT00000083765 3 1 1 60 17 44748679 44748697 CGTGAACGACATCTTCGAG 59 44748720 44748739 CTTGTTGTAATGAGCCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039778.1 ENSRNOG00000048235 ENSRNOT00000075468 2 1 1 80 X 84694287 84694310 GAGATTTCACCTCACATGCG 59 84694352 84694371 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07017197.1 ENSRNOG00000048492 ENSRNOT00000070931 3 1 1 114 15 17096229 17096250 TTGGACCAGAGAAACACCTC 60 17096134 17096158 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056093 ENSRNOT00000092185 3 1 1 60 2 22157857 22157876 GGCTATCCCTGAGTTCAGAG 59 22157899 22157917 CCTCTCCTATCCAGGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052117 ENSRNOT00000086797 3 1 1 67 2 75154175 75154193 TTATCCATTGCACTCCGGA 59 75154224 75154242 TTATGCAGTCCAGTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051700.1 ENSRNOG00000052969 ENSRNOT00000077990 3 1 1 60 3 19495855 19495873 CATGGAGGCTGAAGATGCT 60 19495897 19495915 TGTGGGTGGGTAACTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053421 ENSRNOT00000086197 3 1 1 76 12 9597070 9597088 TTAGAGGTACCAGTGCAGC 59 9597127 9597146 GAGTGTAGACACAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059523 ENSRNOT00000083202 2 1 1 60 3 61529591 61529611 GAACGACACAGAGATTAGCAG 59 61529631 61529651 GAATGCTTCCTGACTTAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057595 ENSRNOT00000083904 2 1 1 61 1 206801980 206801998 ATGAGGTTTATCAGAGGCG 57 206801937 206801959 GGTAGATGTCATCTAACTCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045036 ENSRNOT00000070303 2 1 1 60 2 66694886 66694906 ATCAAACCTGGTTAGTTGGAG 58 66694925 66694946 CTACAGAGCTCCCTTATTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066142.1 ENSRNOG00000057009 ENSRNOT00000079166 2 1 1 81 9 3897600 3897880 ATTCATGTTCTTGACTGGCC 59 3897921 3897942 TCTTCACAAGACTTAACCAGTC 58 Novel Rattus norvegicus 81 AC126572.3 ENSRNOG00000056197 ENSRNOT00000082327 3 1 1 72 12 13284068 13284087 CATTTCTCAAACTCCCGTCC 59 13284011 13284030 TGATCACAACAAGCAAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000055979 ENSRNOT00000080636 1 1 1 60 6 92997124 92997143 CAATGAGGTTTATCCGAGGC 59 92997083 92997103 AGCTACTGTGAATAGAGCACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048698.1 ENSRNOG00000061625 ENSRNOT00000072346 2 1 1 80 5 88657213 88657236 GAGATTTCACCTCACATGCG 59 88657152 88657171 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057538 ENSRNOT00000082909 2 1 1 62 10 70581883 70581901 GTCACATGTGCATCAGCAG 60 70581839 70581857 AGGTCAGAACATTGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006740.1 ENSRNOG00000058869 ENSRNOT00000079650 2 1 1 60 1 250987764 250987783 ATGCCTTACATGGGAAGGAC 60 250987802 250987824 AGATAACTTCTCTACAGTGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053284 ENSRNOT00000092072 3 1 1 60 1 53584388 53584406 TTACCCTGTCACAAGGGAC 59 53584346 53584364 TGAGAAACCATTGTCCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009786.1 ENSRNOG00000036430 ENSRNOT00000054542 3 1 1 60 2 112289681 112289701 TAGGTGTTGCCTAAGAAATCC 58 112289723 112289741 CTAGCCTTTAACGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000057997 ENSRNOT00000091218 3 1 1 60 4 71663374 71663392 TACTGGTTCCAGTCATCCT 57 71663414 71663434 AGATTCTCAGGTGTCAAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061743 ENSRNOT00000090628 2 1 1 60 1 113937972 113937994 GATACAGAGAAGATTAGCATGGC 59 113938012 113938032 GCATGCTTTACGAATTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000051415 ENSRNOT00000082279 1 1 1 60 1 31978192 31978211 CCACTAAGCCATTGAGAAGG 58 31978151 31978169 TATGTTGCCACTTCACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047835.1 ENSRNOG00000023101 ENSRNOT00000038090 1 1 1 80 5 49821971 49821990 GCAGACCTTATGGCATACAG 59 49822031 49822053 AATGTCAATCAGCTCCTTCAC 59 Novel Rattus norvegicus 81 AC128960.2 ENSRNOG00000057958 ENSRNOT00000085104 2 1 1 142 17 78911820 78911838 CATTGTGGGAGTCACACTC 58 78911944 78911999 AATCCACTGAAGGTCGAGG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000060796 ENSRNOT00000080599 2 1 1 70 12 12213902 12213921 TCTAAGGCGTGATTATTGCT 57 12213952 12213972 TGTAGGAAGTATGCCATTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000061593 ENSRNOT00000081154 2 1 1 60 1 58335062 58335085 AGAGTTATAGGATAAAGGGCTGAC 60 58335103 58335122 TTCTTCCAAGTTGCTACGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059864 ENSRNOT00000087676 2 1 1 61 1 48643751 48643769 GCTACGTCTACCTAGGCTC 59 48643708 48643727 TGTTCCACCACTAGTCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060989 ENSRNOT00000078706 1 1 1 61 1 214429411 214429429 CCTAATCCCTGCTGGTCAG 60 214429454 214429472 CTAGGATGCTCTGGTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000061370 ENSRNOT00000088272 2 1 1 60 Y 646173 646191 TGCATTTATGGTGTGGTCC 58 646131 646150 CATGCTGGGATTCTGTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053119 ENSRNOT00000091358 3 1 1 60 14 62552057 62552076 GTAAGGCTATGCCTATGCTC 58 62552097 62552117 TCAGGCTACTAATCATTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072671.1 ENSRNOG00000060089 ENSRNOT00000083565 1 1 1 60 2 2694642 2694663 CTTTACATTAAAGCGAGAGCAC 58 2694681 2694702 TGTGTATTTGAATATGCAGCCC 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07017531.1 ENSRNOG00000056186 ENSRNOT00000085910 2 1 1 81 15 25520220 25520239 GTACCCAGACATCTTCATGC 59 25518327 25520179 ATTCTTAAACCATACCTGCACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058751 ENSRNOT00000083673 1 1 1 60 12 2164199 2164217 TGGGTTACGGGTAAGTGAG 59 2164240 2164259 TTGAACGTCCTGTTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056196 ENSRNOT00000079299 2 1 1 60 14 48387620 48387642 GATACAGAGAAGATTAGCATGGC 59 48387661 48387680 GAACACTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056196 ENSRNOT00000079299 3 1 1 61 14 48387615 48387637 GGAACGATACAGAGAAGATTAGC 59 48387657 48387676 ACTTCACGAATTTGCATGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054691 ENSRNOT00000088249 1 1 1 84 14 48886934 48886952 TCCTGGCAAAGAACATGTC 58 48886868 48886889 CACTACCACAAATTATGCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050257 ENSRNOT00000040529 2 1 1 84 1 103145977 103145995 CGTACCAGCTAAGAGACCG 60 103146042 103146171 GCATGTCTCATTATGGGCAG 59 Novel Rattus norvegicus 81 AABR07014739.1 ENSRNOG00000057494 ENSRNOT00000087499 3 1 1 60 14 29232349 29232370 AATCCCTAGAGAAGAGGATGAG 58 29232310 29232328 CATACCCACTCCCATTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057537 ENSRNOT00000092149 2 1 1 60 14 86882135 86882155 CCTATCCTCTCATGATGGGAG 59 86882095 86882113 CATGAGCAGCAGAGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056856 ENSRNOT00000089295 1 1 1 60 1 146310359 146310379 TGCAGGCTGATACTCTAACTC 59 146310399 146310419 GAGTTACGCAGTTGAATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000054872 ENSRNOT00000086564 1 1 1 60 10 105646452 105646475 AGGATGATCTAAGTTATCCCTGTC 59 105646491 105646512 TCAGTAAACCGTGAATCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059151 ENSRNOT00000086556 2 1 1 63 6 124644924 124644948 GGGAAGGATACAAAGATTAACATGG 60 124644885 124644906 GTAACACTTCACAAATTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057828 ENSRNOT00000083305 3 1 1 60 6 59266307 59266325 ACACAAGCATCAGTAGGTG 58 59266347 59266367 GATCAGAACACAGAGCATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059914 ENSRNOT00000082418 1 1 1 60 5 76168182 76168200 CCCACTACAATACAGAGCC 57 76168140 76168159 GAGGTAGAAGATGAGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000055559 ENSRNOT00000088779 1 1 1 60 14 30523639 30523659 GCATAAGTTAATGCTTTGCGG 59 30523599 30523618 TCCTGAAACCCAAGATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053569 ENSRNOT00000079288 2 1 1 60 10 47586444 47586462 CATGGGATCTCCAACTGCA 60 47586486 47586504 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053702 ENSRNOT00000084319 2 1 1 62 1 282492769 282492793 CAATACAGAGAAGATTAGCATGACC 60 282492811 282492831 GGAAGGCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054317 ENSRNOT00000091900 2 1 1 60 3 31859234 31859253 TACAAATAGCTGCACTCACC 58 31859276 31859294 TCCTGCAATGGACCTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061689 ENSRNOT00000080007 1 1 1 67 3 98560469 98560487 GTGTCACTAGATGGCAGAG 57 98560518 98560536 TCAAATGCTCACAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008670.1 ENSRNOG00000047646 ENSRNOT00000075575 3 1 1 181 2 69736983 69737002 TCTCAGGAGCAGAAGATTCC 59 69737141 69737165 GTTGAAGATTACTGGTCCTTTGAG 60 Novel Rattus norvegicus 81 AABR07017604.1 ENSRNOG00000054270 ENSRNOT00000085162 3 1 1 79 15 29157490 29157509 TTTCACTAGTGCTCCTGTGG 60 29157738 29157756 AATGAGGGATTCTGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC129004.1 ENSRNOG00000054543 ENSRNOT00000091916 2 1 1 80 1 168555094 168555115 TTCTTCATCCATACCTTCTCCA 59 168555033 168555055 ATAGTGTAGAGGACCACAACG 59 Novel Rattus norvegicus 81 AABR07003935.9 ENSRNOG00000049058 ENSRNOT00000075058 3 1 1 60 1 121213079 121213102 TACTCAGGCTACTGGTTATATTCC 59 121213042 121213064 GAGAAGCTTTGGTTATACACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019512.1 ENSRNOG00000046236 ENSRNOT00000074277 1 1 1 60 15 107486774 107486793 ACCTGGATGAGAAGGATGAG 59 107486813 107486834 TCTTAGATTCCCAGTATCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115181.1 ENSRNOG00000058984 ENSRNOT00000082295 1 1 1 74 10 14136923 14136943 CACAAACACATACACTCACAC 58 14136977 14136997 GTGTGAGTGTATGTGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gjd3 ENSRNOG00000051691 ENSRNOT00000084275 3 1 1 203 10 86890158 86890176 ATCATGCTGATCTTCCGCA 60 86889973 86889991 GTAGATGACGAACAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.11 ENSRNOG00000050219 ENSRNOT00000072164 3 1 1 61 1 121175506 121175525 ATTTGATCAGTCTGGTTGCT 58 121175464 121175484 CTTTGATTATTCCCAGGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_18_0774.1 ENSRNOG00000061786 ENSRNOT00000088260 1 1 1 80 18 78277511 78280863 CAGGGTATGGGCAAATTGG 59 78280907 78280925 TCTCAGTAAAGGCCTGGAG 58 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060947 ENSRNOT00000085467 2 1 1 60 2 161564699 161564717 TCATGGACAGTTTGAACGC 59 161564741 161564759 CTCAGACAGGTGTAGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU54 ENSRNOG00000059478 ENSRNOT00000085342 1 1 1 64 5 16706727 16706748 CGATGAGGAGATACCTACTGTG 60 16706684 16706702 TATCGGCTCAGAATAGCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068285.2 ENSRNOG00000061524 ENSRNOT00000086903 1 1 1 91 9 95786920 95786943 GAAGATCAAACTGACCGGC 59 95786847 95786865 GATAGGACTTCACAACGGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058230 ENSRNOT00000085268 2 1 1 60 2 205576861 205576880 GGTTCATTCTCAGACCTGAC 58 205576903 205576921 CACAGACATATGGAGCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061077.1 ENSRNOG00000058738 ENSRNOT00000086523 2 1 1 60 4 103636375 103636393 CAGTAGAGTGAGGGCTGAG 59 103636333 103636352 AGGATACTCTCGAACTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000052910 ENSRNOT00000090248 3 1 1 60 2 188059525 188059546 AAGACTTTGCTGATACACTCCT 60 188059567 188059585 TCTCCAATAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055440 ENSRNOT00000080042 1 1 1 60 1 116761855 116761876 ACAACAGAAAGTCAAGAACAGG 59 116761816 116761834 TCAGCGTAATCCTATTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041949.1 ENSRNOG00000058173 ENSRNOT00000083615 1 1 1 80 X 144036668 144036686 CATGAAGGAGTACCCGGAC 60 144036605 144036624 TCCCTATCTTGAAGCAGCG 60 Novel Rattus norvegicus 81 AABR07058479.1 ENSRNOG00000047414 ENSRNOT00000071132 3 1 1 70 7 118911586 118911604 GACAGCAGGAGTCAGTCTG 60 118911641 118911660 AAACACTAGTCACAGTCGCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057431 ENSRNOT00000090249 3 1 1 68 2 186408837 186408855 GTGTCAGTAGGTGGCAGAG 60 186408884 186408905 CACTCAGATGTTCATTGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052179 ENSRNOT00000080671 3 1 1 60 1 190936429 190936452 GAGTTGTTCTTATATCAGTCAGGG 59 190936392 190936412 CAAGCTAGGATGAACAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0772.2 ENSRNOG00000057517 ENSRNOT00000086595 2 1 1 60 X 77192130 77192148 CACTGCCAGAAGAGAACCT 59 77192171 77192190 CTAAATGACCCTCCTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073367.1 ENSRNOG00000059923 ENSRNOT00000072278 1 1 1 67 8 19213169 19213187 CTCACTTGGCAGTTGTCTG 59 19213118 19213139 GGAAACAGTAATTGAAGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047041.1 ENSRNOG00000048432 ENSRNOT00000072046 3 1 1 66 5 16959187 16959205 GGAAAGACTCCTAACGGCA 59 16959139 16959157 AAAGTGGCCTAAGGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055876 ENSRNOT00000087417 1 1 1 60 9 67474113 67474134 CTACCCTGTGTATATCTCAGCC 60 67474074 67474094 ACCCATTCACAATACAGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.2 ENSRNOG00000054267 ENSRNOT00000092212 2 1 1 87 15 29291271 29291419 CTTAGTGTTTGGAGGAAGCA 58 29291203 29291221 GTTCACAGTCAGAGAAGCC 58 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000051900 ENSRNOT00000090075 3 1 1 60 9 82874027 82874047 AGTGGCTATTTCTACACTCAG 57 82874066 82874087 AGGCTACAAACCATTCTTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057698 ENSRNOT00000080280 2 1 1 61 5 152601544 152601562 ATCATTCCTGGGTCAGGAG 59 152601587 152601605 AAGTTCTCCGGAAGAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041720 ENSRNOT00000063473 3 1 1 60 1 28595998 28596020 TCTGGTTTCAGAATCTAGACAGG 60 28596039 28596058 GTATTCCCAGGCAGTTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052937 ENSRNOT00000081298 3 1 1 61 1 241451146 241451166 CTGCTGTGTCACATGTATCAG 59 241451189 241451207 GGTCATCTTGGGTCATGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053189 ENSRNOT00000082911 1 1 1 60 5 35110568 35110591 GAAACAGTAAGTGGCAGATAAGAG 60 35110531 35110549 CACAGGTCAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058967 ENSRNOT00000079953 3 1 1 61 1 174774311 174774331 CCATACCCTAATGTTGGAACG 59 174774354 174774372 GTGTCATCCTTGTGCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044566 ENSRNOT00000069833 1 1 1 60 1 255816902 255816923 CACCCTATCCTCAACCTATCTC 59 255816943 255816962 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060957.1 ENSRNOG00000054012 ENSRNOT00000082501 2 1 1 92 4 101687366 101687764 TGGATTCAGGGAACCAGTG 59 101687820 101687838 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000052756 ENSRNOT00000081082 1 1 1 62 1 80369851 80369869 CTTCTTCGGATTGCTGACC 59 80369807 80369826 CTACCACAAATTATGCGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059932 ENSRNOT00000088663 2 1 1 90 14 48993477 48993495 AATCACTGTAGGTGTGGCT 59 48993543 48993567 CATGGTCAGATCTTTGAATGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000054518 ENSRNOT00000079318 3 1 1 101 14 16471871 16471891 CAGCCAGTTAAGCTAATCAGG 59 16471790 16471808 CATACAAGCAACAGGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049886.1 ENSRNOG00000046811 ENSRNOT00000070940 2 1 1 60 5 142559356 142559375 TTACTCTGTAGCCTAGGCTG 58 142559315 142559334 ATGAGTTTGAGGCTAGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063425.3 ENSRNOG00000056970 ENSRNOT00000087960 2 1 1 91 6 30643574 30643592 GGATCCCTACAACTCGGTG 60 30639100 30639118 AGGTCTCCAAGGTGAACAG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053685 ENSRNOT00000090956 3 1 1 60 4 97774281 97774301 AACTAGTCTGTACAACCACCA 59 97774322 97774341 CAGAGTGCAATAGAGAAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056809 ENSRNOT00000083140 3 1 1 60 13 108532342 108532360 CCTCTACTCCAGAGATGCC 59 108532381 108532402 AAGTCATGTAGTTGCTTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.3 ENSRNOG00000059214 ENSRNOT00000058446 1 1 1 90 4 101949326 101949732 GATCCAGGAAACCAGTGGT 59 101949786 101949804 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057771 ENSRNOT00000091718 3 1 1 64 13 72734479 72734497 AGAGATCAGCCAGCATGAC 60 72734433 72734453 TAAACGTGTAACACTTCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017878.1 ENSRNOG00000061789 ENSRNOT00000081436 3 1 1 98 15 32188775 32188983 CAGTTTCATTGGGTGAGCA 58 32189044 32189063 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AC097037.2 ENSRNOG00000033186 ENSRNOT00000052060 2 1 1 60 15 32917174 32917193 CAGATGGTCACTGATGTCCT 59 32917133 32917152 CCCGAATTTCTGTCTTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097037.2 ENSRNOG00000033186 ENSRNOT00000052060 3 1 1 60 15 32917176 32917195 AACAGATGGTCACTGATGTC 58 32917135 32917156 CGAATTTCTGTCTTTGGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.1 ENSRNOG00000055292 ENSRNOT00000087602 1 1 1 60 5 25727781 25727803 CATATCAGGAGCACATTAGACAG 59 25727822 25727841 TCTTCCTCTCGGGAATACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052611.1 ENSRNOG00000055689 ENSRNOT00000086517 2 1 1 82 3 66269056 66269074 TGATCAGTCTTGGGTGCAG 60 66269118 66269140 GTAAGGTGTGAAACATTGCGT 60 Novel Rattus norvegicus 81 AABR07048770.1 ENSRNOG00000031344 ENSRNOT00000049192 2 1 1 60 5 90797408 90797431 ACTCAGATGTATGATGGATCTCAG 60 90797371 90797390 TTTCTGAATCATCCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061005.1 ENSRNOG00000059007 ENSRNOT00000082333 3 1 1 85 4 102665568 102665868 TGGATTCCTGGAGCAACTG 60 102665916 102665935 GAGATGGAAGCTGACTCTCC 60 Novel Rattus norvegicus 81 AABR07060963.1 ENSRNOG00000055428 ENSRNOT00000087773 1 1 1 60 4 101883019 101883040 TTCTTGGGTTATTGATGCTCTG 59 101883170 101883189 GACTGGGTCATCTGAATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000054660 ENSRNOT00000090290 3 1 1 61 10 111037513 111037535 GGTGGTGTTCTTATATCAGTCAG 59 111037553 111037574 CAAGCTATGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054666 ENSRNOT00000090195 3 1 1 62 5 55823643 55823662 ATATACGAGTAGCTGCGCTC 60 55823600 55823621 CCTACAATGGACATTAAGAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U11 ENSRNOG00000053931 ENSRNOT00000081762 3 1 1 61 1 20389053 20389074 GACATCAAGAGATTTCGGAAGC 60 20389096 20389114 GGACCAATGATCACCAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059349 ENSRNOT00000086328 3 1 1 60 3 72157181 72157205 CTGGAAAGATACAGAGAAGATTAGC 59 72157145 72157165 TTAGGAATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035293 ENSRNOT00000053416 2 1 1 60 6 114332886 114332906 TGATCTCAGAAGCTAAGCAGG 60 114332926 114332946 GAAAGTCTGTTCTCCCATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057511 ENSRNOT00000082306 2 1 1 61 13 89311797 89311815 AGGCTTATCCATTGCACTC 58 89311840 89311858 GAGTTTCCCGCATTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053909 ENSRNOT00000087707 1 1 1 60 20 37370375 37370395 CTAGAACCTCCAAACAAGCTC 59 37370415 37370435 ATGTGATCTCTTCAGTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055690 ENSRNOT00000080297 2 1 1 60 6 47324013 47324036 GGATGAAAGAAGAGACACTTAGTC 59 47323976 47323997 ATCATTCAGATGACCATAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095959.1 ENSRNOG00000058957 ENSRNOT00000079940 2 1 1 60 3 78134743 78134764 CTGGCTTTCTTGTCTTTACTGG 60 78134704 78134724 CAATCATCTTGGGTGTCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 3 1 3 75 X 73496700 73496718 CAGTATTGAAGCAGAGCGT 58 73496757 73501442 TTTCTTTACACCACGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047140.1 ENSRNOG00000033979 ENSRNOT00000049520 2 1 1 60 5 21043671 21043689 ATTCAACAGAGAAACGGCA 58 21043629 21043647 CGTAATCATCAGCGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054431 ENSRNOT00000090058 2 1 1 60 10 4544615 4544636 TTTGTTGACTCCTGAGATTTCC 59 4544656 4544675 TACCACCACAAAGTATGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014836.1 ENSRNOG00000002127 ENSRNOT00000002894 1 1 1 60 14 33596973 33596991 CCCAGAGATCACAGAAGGT 58 33596930 33596948 ATTGTAAGCGCAGTGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058188 ENSRNOT00000080426 1 1 1 60 13 65681963 65681983 GACACAGAGATTAGTGTAGCC 58 65682000 65682023 CATAGGACCCTTCCTAAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045206 ENSRNOT00000070473 2 1 1 60 6 121315991 121316009 TTCAGAAGCTAAGCCAGGT 59 121315949 121315973 GATATTCCAAGACAGTATCCTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040878 ENSRNOT00000062631 2 1 1 63 14 60192210 60192228 TGTTCAAGCCTGACCTCAG 60 60192165 60192184 AAGTCTCCCATCTGAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055104 ENSRNOT00000084472 2 1 1 60 3 142940846 142940866 GGAGAAAGGCTATGTTTACCT 58 142940883 142940906 GGCTACTAATCATTCAGATATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057373 ENSRNOT00000078763 2 1 1 60 13 32174748 32174770 AGTCAAGGGTAGATGAATAGCTG 60 32174788 32174808 ACCTTGAGAGTTTGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000059370 ENSRNOT00000089426 3 1 1 60 6 124125304 124125324 GAGAAAGACTGAACAACAGGT 58 124125345 124125364 AACAATGAGTTCTGGGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045510 ENSRNOT00000070777 2 1 1 60 20 37200834 37200852 CTAAGCAGGATCAAGCCTG 58 37200874 37200894 GAGCACATGGTATTTCTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055819 ENSRNOT00000087345 3 1 1 60 6 95402901 95402919 GACCGGTTTCAGTCAAAGG 59 95402942 95402961 CTTGTTCGGAGGTTCTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030590.1 ENSRNOG00000045884 ENSRNOT00000073776 3 1 1 75 10 94982577 94982595 CCTAGACGAGACACAGTGC 60 94982520 94982538 GACCTTACAACTGCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060764 ENSRNOT00000081276 2 1 1 60 13 66565010 66565031 GAACGATGCAGAGAAGATTAGC 60 66564971 66564990 ACTTCACGAATTTGCGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061392 ENSRNOT00000087975 2 1 1 60 3 22048157 22048179 GGAACGATACAGAGAAGATTACC 59 22048199 22048217 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052250 ENSRNOT00000079163 1 1 1 60 13 6651629 6651648 GTTAGTAAGTGGCACAGAGG 58 6651588 6651606 TGTTCACAGGTGAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059767 ENSRNOT00000079748 1 1 1 66 15 12660694 12660716 GGCAGTACGTATACTAAAGTTGG 59 12660650 12660668 TTATGTGCCATCCTTCGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059767 ENSRNOT00000079748 2 1 1 67 15 12660694 12660716 GGCAGTACGTATACTAAAGTTGG 59 12660649 12660667 CTTATGTGCCATCCTTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061076 ENSRNOT00000084975 1 1 1 60 20 19411377 19411397 GTAACAGCTATGACATCTGCC 59 19411415 19411437 TACCTAGATCTGCTGAATCAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060819 ENSRNOT00000079179 3 1 1 60 13 2964786 2964805 CTTCACACTGCGTCAAAGAG 60 2964745 2964763 TTGACCAGAGACCTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057424 ENSRNOT00000080955 2 1 1 83 7 70150280 70150298 TACAGGCAGTACAGGTGTG 59 70150215 70150233 AACACTGAGCATAGACGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057108.1 ENSRNOG00000059252 ENSRNOT00000070974 2 1 1 80 7 55777476 55777499 GAGATTTCACCTCACATGCG 59 55777541 55777560 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061558 ENSRNOT00000086826 3 1 1 60 3 93005645 93005667 GATACAGAGAAGATTAACACGGC 59 93005607 93005626 GAAAGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 2 1 1 61 7 108551264 108551285 GTCCCTAAGCCAAATAAGTCTC 59 108551223 108551242 ACGCCTTTGGGTAACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA26 ENSRNOG00000060741 ENSRNOT00000082884 3 1 1 85 20 34992117 34992138 TGGTACTTTAAGAGGCTAACAC 58 34992183 34992202 CAGGATCCAAAGAGGAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053254 ENSRNOT00000086636 3 1 1 61 20 46535793 46535811 GATTTGACTCACACGGCTG 59 46535750 46535768 ACACATGGACAGAAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136025.2 ENSRNOG00000061055 ENSRNOT00000083834 1 1 1 80 7 59462459 59462477 CTGATTGCAGACACCACAC 59 59462515 59463403 CATCCTAAGTAACGATTGATTCGAG 60 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000059556 ENSRNOT00000087808 3 1 1 67 13 103192516 103192534 CAAAGTGTTGAGTTCAGCC 57 103192563 103192583 CAGCTTCAATGTTCCAAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057019 ENSRNOT00000079615 1 1 1 60 19 20431994 20432015 CAGAGTGATCTATCTGTCTGTG 58 20431955 20431974 GAACTAGATCAGCCAAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057547 ENSRNOT00000081872 1 1 1 60 6 28838042 28838062 GGTTGATTCCACTGATCTGAC 59 28838084 28838102 CAACAGATGCAGCTTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054233 ENSRNOT00000086376 3 1 1 60 19 44299867 44299885 AACTGGAACAATGCAGGGA 60 44299908 44299927 ACAAATTTCCGTGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060875 ENSRNOT00000087309 1 1 1 60 1 69687356 69687377 ATGTATTGGGAGATACTGTGAG 57 69687394 69687416 GTCTTTCTCTACTAGGGAATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121465.1 ENSRNOG00000048692 ENSRNOT00000072375 2 1 1 60 19 37883897 37883916 GCCTCAAAGTCAGAAATCCA 58 37883938 37883957 GCTCATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055727 ENSRNOT00000053449 2 1 1 60 19 54166978 54166999 GCTCCTGATCTTGTATGATCTC 58 54167019 54167038 CATCCAAGTACTAACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043983 ENSRNOT00000069250 2 1 1 66 13 73013663 73013682 GCTATACCACCATGAAAGCA 58 73013711 73013729 AACTAAACAGCCCTACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045307.1 ENSRNOG00000046774 ENSRNOT00000071250 3 1 1 82 20 42152139 42152160 AAGAACTCAAGAAGTTAGACCG 58 42152200 42152223 CTCAGCTGTGAATTTGTTTAGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000055731 ENSRNOT00000088894 3 1 1 60 1 221848827 221848845 TCTGAATGCAGCCAATGTC 59 221848785 221848803 GGTTGTAACTAGCCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097890.3 ENSRNOG00000059818 ENSRNOT00000085800 3 1 1 70 18 51300151 51300171 ATGAGATCCATCTGTAAGGCA 59 51300101 51300119 TGTTACCTCCCACAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054894 ENSRNOT00000088069 3 1 1 60 19 62201050 62201071 GACGATACAGAGAAGATAGCCT 59 62201092 62201110 ATTTGCGCTATGTCATCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.2 ENSRNOG00000051082 ENSRNOT00000077029 1 1 1 60 X 73557118 73557137 GACCTATGGGTGACTTTGTG 58 73557160 73557178 TAAGTTGGTCAGTGTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060797 ENSRNOT00000083051 1 1 1 60 18 34023737 34023760 GATACAGAGAAGATTAGCATGGTC 59 34023700 34023720 CAAAGGACACTTACTTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041057.1 ENSRNOG00000046961 ENSRNOT00000073914 2 1 1 81 X 118131814 118131833 GGCATATAGCAGGTCCTCAG 60 118131877 118131895 CTCCACATAACAGGTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068650.1 ENSRNOG00000031795 ENSRNOT00000044153 1 1 1 80 9 114151423 114151443 ATAGATTGTCTGTGCCATCTG 58 114004220 114151381 TTCCTTGGCTTCTCTTGAC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000052317 ENSRNOT00000087654 1 1 1 60 15 64346703 64346721 ACAGGTCTTCAGTCAAGGG 59 64346743 64346763 CTTGTTTGGAGGTTCTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045106 ENSRNOT00000070373 3 1 1 60 19 35035191 35035211 TCTAGTCTGATCTCAGATGCT 58 35035232 35035251 AACATATCCCATCCAAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066532.1 ENSRNOG00000050812 ENSRNOT00000074139 2 1 1 60 9 10900358 10900378 TACAGATGGTTATGAGCCACC 60 10900400 10900418 CACTTCCAGAAGTCCCGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068249.1 ENSRNOG00000054014 ENSRNOT00000090655 2 1 1 60 9 92791445 92791463 CATGTAGGAACTCGAGGCA 59 92791485 92791505 GAGGATTCCTGTACTCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068249.1 ENSRNOG00000054014 ENSRNOT00000090655 3 1 1 60 9 92791441 92791459 GCCTCATGTAGGAACTCGA 59 92791481 92791501 ATTCCTGTACTCTTCAGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027744.1 ENSRNOG00000057345 ENSRNOT00000082713 3 1 1 61 17 43111011 43111034 GGACTTAGGAGATAAGAAGGAAGG 60 43110973 43110997 CTGCTATCCTGTCAATAACTTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061120 ENSRNOT00000083846 2 1 1 85 15 25633824 25633845 CAACATAGATGCTGACATAGGA 58 25633760 25633780 GGAGTTCTTGCCAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000055609 ENSRNOT00000091914 3 1 1 63 7 140197940 140197958 TTCAAGCAGACGCCTAGAG 60 140197895 140197914 CTCTGTTGAAGTCCAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135285.4 ENSRNOG00000060386 ENSRNOT00000077339 1 1 1 60 18 28355444 28355462 CAGGCAGTGTATTGCATCC 59 28355485 28355504 CTAGACTAGGACCAACTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000051425 ENSRNOT00000088417 1 1 1 60 6 80258596 80258614 AGTACACTGACACTGGCTC 59 80258554 80258572 TTTGAATCTGGACCAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037054.1 ENSRNOG00000003789 ENSRNOT00000005028 1 1 1 64 X 10932264 10932285 TCAAGGGATGTAACTGAAAGAG 58 10932220 10932243 GGCTTATCCTCATACATCTTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC117925.2 ENSRNOG00000051433 ENSRNOT00000089635 1 1 1 80 4 114778100 114778118 TTGACCACTCTAAAGCCCA 59 114778162 114778398 TGTCTTTGCCAGAACTCAG 58 Novel Rattus norvegicus 81 AABR07051238.1 ENSRNOG00000057800 ENSRNOT00000091481 1 1 1 60 3 2267587 2267609 CAGTTTACCTGTCTATGAGATGG 59 2267625 2267647 GTTAATCCTGCCTAAGAGATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056319 ENSRNOT00000091286 3 1 1 60 15 108823617 108823638 AAGATACCGAGATTAGCTTTGC 59 108823578 108823597 GGAATTCTTCGTGAACTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689958 ENSRNOG00000055798 ENSRNOT00000091497 2 1 1 60 1 64486745 64486764 GTTTGCCTGGATGTTGTCTC 60 64486787 64486805 GCAGAAGAAGTGGTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056726 ENSRNOT00000089846 1 1 1 60 7 121371483 121371501 TTCCTAGCCATGGAAGAGC 59 121371441 121371461 GTACCAATGAAATGGTGACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000056350 ENSRNOT00000079660 2 1 1 64 3 93979997 93980015 GTATGCACTGTTGTGGGAG 59 93980043 93980061 ATTGTGAGGCTAGGACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076920,ENSRNOT00000076871 1 2 2 80 X 74334914 74334933 GATTGCCTGGATTTAGAGGA 57 74334762 74334871 CAGGATTGTTCCCGTAAGG 58 Novel Rattus norvegicus 81 AABR07054945.1 ENSRNOG00000060485 ENSRNOT00000083781 1 1 1 60 3 174466499 174466519 AAAGAATCCAATCGCTTCTCG 59 174466539 174466559 TCTCACACTTGGATTCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059912 ENSRNOT00000082872 3 1 1 60 3 39945845 39945867 GGTCCATAGGTAATGAGTTATCG 58 39945884 39945905 AGGAGATCAACCTGTAACTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052454 ENSRNOT00000090231 1 1 1 60 3 48776807 48776825 GTGCATTAGTACGGGACAG 58 48776765 48776783 CACAGGCCAGAATACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 3 1 1 63 4 90089754 90090483 GCATGACGTTCTATGTCAGG 59 90090507 90090527 GATTTATCAGCCCAAACTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053330 ENSRNOT00000077713 3 1 1 60 5 54337277 54337295 AGAAGATTTAGCATGGCCC 58 54337319 54337337 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054693 ENSRNOT00000081609 2 1 1 60 7 92034041 92034059 TACATGTGCATCAGTTGGT 57 92034081 92034101 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051312.1 ENSRNOG00000059508 ENSRNOT00000092147 1 1 1 60 3 4773236 4773258 CAGTTTACCTGTCTATGAGATGG 59 4773274 4773296 GTTAATCCTGCCTAAGAGATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021861.1 ENSRNOG00000053085 ENSRNOT00000088174 1 1 1 100 13 95958432 95958450 CTGAGCTGCTCTTCATGAC 58 95958346 95958368 TAGCCAAGGTTGTACTGCT 59 Novel Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091,ENSRNOT00000076399 2 2 2 94 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31264931 31265825 CATCATACACCTTGCCACG 59 Novel InUTR Rattus norvegicus 81 AABR07032057.1 ENSRNOG00000061300 ENSRNOT00000091133 3 1 1 75 18 44909130 44909149 GTGTTATTGAGCACGGTGTG 60 44909074 44909092 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055806 ENSRNOT00000087435 3 1 1 60 6 980373 980392 GCGTATGCATATCTTGCCTG 60 980414 980433 CTCCAAGGGTATTTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060291.1 ENSRNOG00000053744 ENSRNOT00000090055 2 1 1 60 4 66236902 66236920 ATTCAGATGGGCAGATTGG 58 66236942 66236962 TATTCAGAAAGGGAAGCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037447.1 ENSRNOG00000051689 ENSRNOT00000089850 2 1 1 60 X 20846141 20846162 TTCTTTGATCCTGTCCAGTAGG 60 20846102 20846123 TGAGAAACATTTCTTCAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058045 ENSRNOT00000077281 2 1 1 60 4 141216968 141216988 GACAACCTTCACGGAATAGAG 59 141217008 141217028 GCACAGCTACTCGTATATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041787.1 ENSRNOG00000041292 ENSRNOT00000063045 2 1 1 60 X 140117790 140117809 GTCTCTTGTGTTAAGGTGCA 58 140117749 140117770 TAGGGCAGTAGATTATAAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057767 ENSRNOT00000087261 2 1 1 61 7 31130732 31130754 CTAATCTTAGCACGATAGCATGG 59 31130774 31130793 GAACGCTTCATGGATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057767 ENSRNOT00000087261 3 1 1 61 7 31130737 31130755 CTTAGCACGATAGCATGGC 59 31130780 31130798 ATAGGGAACGCTTCATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066792.1 ENSRNOG00000054698 ENSRNOT00000091215 1 1 1 80 9 16348874 16349086 AAGACACAGAAGAGGAGGG 58 16348812 16348832 CTTCATAATAGCGCTCTTCCT 58 Novel Rattus norvegicus 81 AABR07065688.1 ENSRNOG00000055807 ENSRNOT00000081540 3 1 1 103 6 139345520 139345622 CATTTCCAAGCTGTGTCCT 58 139345689 139345707 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000054021 ENSRNOT00000082165 3 1 1 60 X 83121593 83121614 TTTCTATGGAAGAGGACTAGCC 59 83121633 83121653 TACCAGGACAGTTCAAGTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061532.1 ENSRNOG00000046964 ENSRNOT00000075370 1 1 1 60 4 132351446 132351467 TGTATGTCTGTATGTGCATGTG 59 132351488 132351506 TACATGCTCATGCACATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549158 ENSRNOG00000056964 ENSRNOT00000089651 1 1 1 60 11 28056537 28056555 TTTCATTGTCCCTCCTCCA 58 28056579 28056597 CCCAACCTTCACCTTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060446 ENSRNOT00000078865 2 1 1 60 15 104930253 104930275 GGAACGATACAGAGAAGATTAGC 59 104930295 104930313 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000051403 ENSRNOT00000079856 3 1 1 66 15 36916639 36916657 CAAGTTCTGCTGCTCATGG 59 36916591 36916610 GTCTGCAGCCAAACTTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018128.1 ENSRNOG00000051849 ENSRNOT00000084318 1 1 1 60 15 41961225 41961246 CATAGCACATAATGGTTTGTGG 58 41961186 41961207 ATTTGAGGCAGCACAATATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045535.1 ENSRNOG00000050094 ENSRNOT00000071513 2 1 1 60 20 50877770 50877788 GACAGAAGCTTCGGGAGAG 60 50877728 50877747 GTGCCTGTATTACTGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034729.2 ENSRNOG00000048042 ENSRNOT00000073682 1 1 1 80 11 85306366 85306388 AGATTTCACCTCACATGCG 58 85306304 85306323 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044303 ENSRNOT00000069570 3 1 1 60 20 50281041 50281059 CCCGGTCTTGTAGGATCTC 59 50280999 50281017 GCCCATCCAAATACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055311 ENSRNOT00000077848 2 1 1 67 11 83848526 83848544 CTTATCCATTGCACTCCGG 58 83848477 83848495 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055903 ENSRNOT00000086913 3 1 1 61 7 64952245 64952264 TTCTGTACATGAATGGCTGC 59 64952288 64952306 TTGGGTTCTTGGGAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000052300 ENSRNOT00000080046 3 1 1 61 1 101117503 101117522 GGTCTTCAGATGTCCTCCAG 60 101117461 101117479 TTTATGGCATCAGCTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061749 ENSRNOT00000084159 1 1 1 60 18 15264994 15265015 CATTATCAGCAGGTTTATGCCA 59 15264955 15264973 AGAGTGGTGAGGAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.2 ENSRNOG00000055713 ENSRNOT00000078323 1 1 1 60 11 29026756 29026775 TGTGGCTATGGTAGCTATGG 59 29026715 29026736 ACCAATATCTTCCACAACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055515 ENSRNOT00000078194 3 1 1 60 7 712974 712992 TAGTGGTGGATCACTTGGC 59 712932 712952 CATTAATTCTCCCAGCTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056152 ENSRNOT00000083734 3 1 1 60 19 51369786 51369805 TCACATGTGCATCTGTAGGT 59 51369827 51369846 TTAGAACATGGAGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000054529 ENSRNOT00000079897 1 1 1 60 9 94900057 94900077 TGATACTTGAGGATTCTGCCA 59 94900099 94900117 TAGCAGTCAGCTGTGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042891.1 ENSRNOG00000047770 ENSRNOT00000073653 2 1 1 69 19 14007353 14007371 GAGATCCAGCTGTAAGGCA 59 14007404 14007422 GATGGTACCACCACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059498 ENSRNOT00000081068 1 1 1 60 7 2667255 2667275 ATACAGAGAAGATGAGCATGG 57 2667295 2667315 GGAACGTGTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034761.1 ENSRNOG00000037898 ENSRNOT00000034210 3 1 1 88 11 88570261 88570281 GCCTGTAATGACACCTTCAC 59 88570330 88570350 GAATAAAGGATGCCAGCAAGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052221 ENSRNOT00000090315 3 1 1 60 5 31308354 31308372 AGCACATGCACTAAGTTGC 59 31308312 31308330 CCATCCTTGTACAAGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125384.1 ENSRNOG00000059405 ENSRNOT00000078068 1 1 1 67 11 68687469 68687487 AAAGGCAATTGCTTCTCGG 59 68687420 68687438 CACCATGAGTGATTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056026 ENSRNOT00000077510 2 1 1 60 11 81375305 81375328 CTATTTGGCAGAATGAGTAAGACC 60 81375268 81375292 TGAACCATACTAAGTGGTATAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061297 ENSRNOT00000078855 2 1 1 60 19 22477088 22477107 GCATCAATATGGTGACCTCC 59 22477130 22477148 GTTCACTCCTCCTTAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056974 ENSRNOT00000081114 2 1 1 60 5 65846412 65846433 AGGGCACATGTATGTAAGTAGG 60 65846373 65846395 GAACACTGAGTATAGGCATAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014132.1 ENSRNOG00000052854 ENSRNOT00000073831 3 1 1 82 14 1691101 1691925 GGGACCACAGAAATAGCAG 58 1691971 1691989 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060748 ENSRNOT00000091291 1 1 1 65 5 68794323 68794341 GCATCAGAAGGTGGTAGAG 57 68794276 68794294 AGATGTTCACAGGTCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058749 ENSRNOT00000085480 3 1 1 61 9 73526296 73526314 GGGTATACGAGTAGCTGCG 60 73526253 73526271 GCTTGCTTTCTTGAGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056818 ENSRNOT00000084820 3 1 1 63 6 117514971 117514991 TGTAAGTCGTAGGTAGCAGAG 59 117515016 117515034 TTCCGATGGTCATAGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060476 ENSRNOT00000081478 3 1 1 60 11 50228805 50228824 GCAGATTGTGTCATATGTGC 58 50228846 50228865 AACATTGAACCTAGCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056761 ENSRNOT00000091455 1 1 1 60 6 111479708 111479730 GGAACGATACAGAGAAGATTAGC 59 111479750 111479768 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053169 ENSRNOT00000088964 1 1 1 60 11 55662717 55662735 GTGATCACTTCCACAGCAC 59 55662758 55662777 GGCCATGCTAAACTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061720 ENSRNOT00000091385 1 1 1 60 20 32354870 32354888 GAGAAGATTAGCATGGCCC 58 32354912 32354930 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060768 ENSRNOT00000085428 3 1 1 60 7 5602200 5602220 TCTGTTACACTGTTGATCCCT 59 5602241 5602260 ACACCTGCCTAATGATCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053668 ENSRNOT00000089633 2 1 1 60 7 1625174 1625192 TTAGCAGTGGATCACTTGG 57 1625215 1625234 ATTAATTCTCGCAGCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107096.1 ENSRNOG00000055642 ENSRNOT00000086087 1 1 1 60 7 117326392 117326410 CCTCTCAATCTGATGCCGA 59 117325585 117325603 AAGAGATCAGGTGCAAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060992 ENSRNOT00000089289 2 1 1 61 11 71434459 71434478 AGAGAAGATTAGCATGGCCC 60 71434502 71434520 AATAGGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041962 ENSRNOT00000063715 1 1 1 60 10 10420231 10420252 TCTACAGTCATATCACCATCAC 57 10420273 10420291 TGCTTAGCTTCCAAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051370 ENSRNOT00000086730 1 1 1 60 5 73747160 73747178 CTACTAGGGAGGCTGTGAC 59 73747201 73747220 GTGAATGACAGCTCAGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 1 1 1 71 6 140642047 140642179 AAAGGTGTCCAGTGTGAGG 60 140641994 140642012 TTTCAGAGACCTTCCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA25 ENSRNOG00000061640 ENSRNOT00000086281 3 1 1 64 4 136623252 136623273 GGTTACTTCTTAACACTGTGAC 57 136623209 136623227 TCACAAAGTGCATGGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029863.3 ENSRNOG00000058245 ENSRNOT00000077451 2 1 1 92 10 56530633 56530651 GGCATATGTTAGTGCTCCC 58 56529664 56530577 TCGATTCCAAATCTGGCTG 58 Novel Rattus norvegicus 81 SNORD111 ENSRNOG00000057770 ENSRNOT00000084121 3 1 1 69 19 43396385 43396404 AGCCTGAAGTGATGATTCAC 58 43396433 43396454 TGATCAGATACACAGAATCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052621 ENSRNOT00000086674 1 1 1 60 11 23071713 23071731 AGTAGGTGGCAGAGAAGAG 58 23071671 23071692 AGATGTTCATAGACCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057394 ENSRNOT00000081366 1 1 1 60 19 62085980 62086001 GCTGCATTAGTAACTAGCAGAG 59 62086022 62086040 ACATGTCAGAACACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 3 1 1 89 1 169279912 169279930 GTGTCTTTCTCCACACTGC 59 169279840 169279860 AAACATCTGAGTCAAGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000061017 ENSRNOT00000081911 1 1 1 60 18 41835190 41835209 CCTCTGTAGTCAGTCAAAGG 57 41835149 41835170 AAAGTCTTTCCATTACTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059892 ENSRNOT00000083000 1 1 1 60 9 76926363 76926381 GTGTGACTACTGTGTCACG 58 76926321 76926340 GAGCATAGACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109942.1 ENSRNOG00000042851 ENSRNOT00000038079 3 1 1 60 7 15129788 15129808 GGTGCAATTTACATTGATGCG 59 15129830 15129848 CTTTGCCTTGGAATTGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051733.3 ENSRNOG00000058552 ENSRNOT00000077772 1 1 1 80 3 20419236 20419383 TACTCTGGCTTACAGGTGG 58 20419174 20419192 CAATTTCTTCCGGAGACGC 59 Novel Rattus norvegicus 81 AABR07033287.1 ENSRNOG00000055793 ENSRNOT00000090586 1 1 1 160 11 15858253 15858271 CAGATAGCTTAGCCAGCAC 58 15858111 15858129 GAACAGCTGGATAAAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.2 ENSRNOG00000048880 ENSRNOT00000074315 2 1 1 60 9 50005825 50005843 TGATGGTACGGAGGATTGG 59 50005783 50005802 TTCCAAACTGTGACTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053669.1 ENSRNOG00000011715 ENSRNOT00000015599 3 1 1 81 3 119499336 119499355 CCTGTTATTGTAGCACCACC 59 119499401 119499419 ATGTACTTGGGTGGAGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059060 ENSRNOT00000079289 2 1 1 60 11 80898276 80898294 GACAAAGAGGAGTGAGGCT 59 80898313 80898336 ATAATCCAGATGTCTACAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000051999 ENSRNOT00000082012 3 1 1 60 4 69404003 69404022 TAACCGCACTGAGAAAGGAG 60 69404045 69404063 CTCTTGGCTTGGTCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061106 ENSRNOT00000078901 3 1 1 60 9 79578129 79578147 AGTTGGAATAGGAGCTTGC 58 79578170 79578189 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076078 2 1 6 80 10 74861916 74876947 GGTGGCTGAAAGATCAAGC 59 74876991 74877009 TCCTGGGAAATCCTTCACG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060779 ENSRNOT00000084211 1 1 1 60 7 73298756 73298777 GTGGTACAGATACAGAGAAGAC 58 73298798 73298816 ATGAACCTGAGTGTCACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111278.1 ENSRNOG00000056688 ENSRNOT00000088211 1 1 1 127 5 64717762 64717780 GTCAGAATTCCACCCAAGG 58 64716498 64717671 AAAGGACCTTTCCCTGGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052350 ENSRNOT00000079024 3 1 1 62 17 19781403 19781422 AGAGAAGATTAGCATGGCCC 60 19781447 19781465 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051814 ENSRNOT00000078607 3 1 1 60 4 84025546 84025565 GTCACATGTACAGCAGTAGG 58 84025505 84025524 CAGAACACTCAACACAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063282.1 ENSRNOG00000056254 ENSRNOT00000089127 2 1 1 62 6 26641096 26641118 ATACTGAGGAGAGCCACCA 60 26641052 26641071 ATTTCCACCTTTGCTCTGAC 59 Novel DesignRelaxed Rattus norvegicus 81 snoU85 ENSRNOG00000060559 ENSRNOT00000084000 1 1 1 60 4 157700693 157700714 GGTAACTGGAATGAAAGTAGGA 58 157700654 157700672 TTTGAGACTCCCAACCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 3 3 4 153 1 134884919 134885451 GGTGTGCCATTCTGAAGAC 59 134873733 134878984 TTCAAGCTGGGTGTAAATGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000057675 ENSRNOT00000078911 1 1 1 60 9 23374410 23374428 CCTGGATGTAATGACCTCC 57 23374449 23374470 CCATAAATCATGCAATCCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096473.3 ENSRNOG00000055700 ENSRNOT00000082862 2 1 1 107 7 120202645 120235755 CCTAAAGGAAAGGCAGGAC 58 120430178 120430196 TCAGACAGCATGAACTCAC 58 Novel Rattus norvegicus 81 AABR07021625.1 ENSRNOG00000057144 ENSRNOT00000089675 1 1 1 68 13 82121325 82121343 TCTTTCTCCACATCCTCGC 60 82121273 82121291 TCACACCAGTCAGAATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056796 ENSRNOT00000077258 2 1 1 60 7 99482965 99482983 ATGGACACTATGAACGCAC 58 99483007 99483025 CTCTCAGACAGGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029023.1 ENSRNOG00000059756 ENSRNOT00000084112 3 1 1 80 10 2992425 2992448 AGATTTCACCTCACATGCGA 60 2992489 2992509 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 ENSRNOG00000057716 ENSRNOT00000091943 2 1 1 108 16 57821917 57823181 CCTCAAACAAATATGACTCGAG 57 57823250 57823268 TTCGCCATCCATAAATCCC 58 Novel Rattus norvegicus 81 AC121204.3 ENSRNOG00000060827 ENSRNOT00000091340 3 1 1 114 5 59090031 59090050 TTGATGTGTCCTTTGGTCTC 58 59090124 59090146 GAAATGGTCTAGCATGAAAGGA 59 Novel Rattus norvegicus 81 AABR07021759.1 ENSRNOG00000023269 ENSRNOT00000039633 1 1 1 137 13 90059483 90059501 TGCTAAGAAGTTCGCAGAG 58 90059363 90059381 ATCTCTTCCTCAGGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066529.2 ENSRNOG00000053989 ENSRNOT00000090330 3 1 1 63 9 10840914 10840932 AAGAAGCTCCCTGTTTGCA 60 10840869 10840888 GAAGAAGAGATGGGAGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0879.7 ENSRNOG00000051089 ENSRNOT00000075903 1 1 1 80 10 88065635 88065655 CAGAGTTGCATCTTCTCAAGC 60 88065694 88066084 CGTATTCATATACGCCTGTCAC 59 Novel Rattus norvegicus 81 AABR07002351.1 ENSRNOG00000060136 ENSRNOT00000091103 3 1 1 83 1 71766500 71766956 AGAATGAGATCAAGGTCTGGT 59 71767001 71767019 CATTTGTCTCTGGCAGTGC 60 Novel Rattus norvegicus 81 AABR07025689.1 ENSRNOG00000059294 ENSRNOT00000087704 2 1 1 80 16 46028003 46028025 TAGAGATCACCCTTGGATTTCC 59 46028064 46028084 ATAGAGCACATACCACAAGGG 60 Novel Rattus norvegicus 81 SNORD82 ENSRNOG00000055464 ENSRNOT00000089999 2 1 1 60 9 93374093 93374114 ACAAGTGATGACTAACAAAGGG 59 93374054 93374074 GCATACTGCATTTCAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055263 ENSRNOT00000086325 2 1 1 60 8 76954031 76954050 TGATACAGAGAAGATCGGCA 58 76954070 76954091 GAACGCTTCATGAATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043776.1 ENSRNOG00000061454 ENSRNOT00000078388 3 1 1 60 19 39670649 39670670 ACTCATTGACTTACACAGTCCT 59 39670610 39670633 CTCAATACTGTTGGAAGTAATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067300.1 ENSRNOG00000060645 ENSRNOT00000083847 3 1 1 60 9 38799959 38799977 CTGGACAAGGAGATCTCCC 59 38800001 38800019 GCTGTTCCAGCTCAATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 2 1 1 63 1 136075098 136075116 TCACCTAGACTTGGTGTGG 59 136075142 136075162 AATTTAGGCAGAAGGTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07041247.2 ENSRNOG00000032390 ENSRNOT00000040695 3 1 1 60 X 124107572 124107591 AGCACTACAAACATCACTGG 58 124107531 124107550 ATACACCTGTAACCTGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067355.1 ENSRNOG00000057235 ENSRNOT00000086189 1 1 1 60 9 41208428 41208446 TGATAGCAGTAAGGCAGGA 58 41208470 41208488 TCTAGAAGACAGTGAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014301.2 ENSRNOG00000050982 ENSRNOT00000074231 3 1 1 66 14 8149932 8149951 AGAGAATTGCCAGAGAAGGA 59 8149884 8149902 CTTTCAGGATTGAGGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 1 2 2 80 10 89185616 89185637 TTCTACAAAGTGAAGATGCCAG 59 89185672 89185775 GATAGTGAACCTCTCATTCTTATCC 59 Novel Rattus norvegicus 81 ENSRNOG00000038427 ENSRNOT00000068104 2 1 1 80 14 78376283 78376304 CAGAAGATTCCATGGTGTTCTG 59 78371996 78376242 GTGCCTGAGTCTATCCTGG 59 Novel Rattus norvegicus 81 AC123425.1 ENSRNOG00000059703 ENSRNOT00000080546 3 1 1 171 12 46718802 46718820 TCCTTCTGCCTCAGTTTCC 59 46718961 46718980 CGACTTGAGAACTTGTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000058037 ENSRNOT00000077605 3 1 1 60 3 4224967 4224985 GTGCCATGATCATGAAGGT 58 4224925 4224943 CAGCTCATCTGAGTAAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045084 ENSRNOT00000070351 1 1 1 60 3 60364178 60364196 CCATCTTGTCCATCTCGGA 59 60364217 60364238 TCATTTCCATCCAAGACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021987.1 ENSRNOG00000058348 ENSRNOT00000080475 3 1 1 80 13 101664044 101664633 ACAAACCAAGGACCATGAC 58 101663982 101664002 GGACACCTTTCATTAGGAACC 59 Novel Rattus norvegicus 81 AABR07038019.1 ENSRNOG00000004319 ENSRNOT00000005702 1 1 1 60 X 37261863 37261881 AGGATAGCTGCTTATGCCT 58 37261905 37261923 GCTCTTCTTTCGCATCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000121.1 ENSRNOG00000061316 ENSRNOT00000087443 2 1 1 80 1 1181389 1198771 GGACAGAAGATACATACTATATCCG 58 1198807 1198827 CTGAACACTGTCCTTCATAGC 59 Novel Rattus norvegicus 81 AC125991.1 ENSRNOG00000043148 ENSRNOT00000067216 1 1 1 80 3 78934957 78934977 CATCTTTCCTTTGCCCTTCTG 60 78935019 78935038 ACCACGTAGGAAGCAAGAG 59 Novel Rattus norvegicus 81 AC125991.1 ENSRNOG00000043148 ENSRNOT00000067216 2 1 1 80 3 78934952 78934972 GTTCTCATCTTTCCTTTGCCC 60 78935013 78935033 GTAGGAAGCAAGAGGAAGCA 60 Novel Rattus norvegicus 81 AABR07041247.1 ENSRNOG00000030645 ENSRNOT00000041969 2 1 1 60 X 124147435 124147453 CAATCCAACCAATGCGACC 60 124147471 124147495 GGTAACTCCATACTTCTTAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000061827 ENSRNOT00000082179 3 1 1 61 8 96408750 96408773 TATGATGATCCTATCCCGAATCTG 60 96408712 96408733 GAAGCCAGATCTGTAACTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069524.1 ENSRNOG00000049314 ENSRNOT00000073310 2 1 1 80 8 26659498 26659521 GAGATTTCACCTCACATGCG 59 26659437 26659456 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07069611.1 ENSRNOG00000061279 ENSRNOT00000041677 3 1 1 84 8 33902590 33902612 TCTGTAAGAAGGACACGGT 58 33902524 33902545 CCTCTATCTGTTGTAGGATTGG 58 Novel Rattus norvegicus 81 AABR07071661.1 ENSRNOG00000053820 ENSRNOT00000089732 2 1 1 80 8 126347104 126382541 TAGCCTCACGTTAAAGACGG 60 126347043 126347061 TAGAGTCGGTACGCTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052370 ENSRNOT00000078251 2 1 1 60 8 46591305 46591323 AGTAGGTGGCAGAGATGAG 58 46591263 46591284 GAATGTTCACAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055172 ENSRNOT00000088332 3 1 1 61 8 56838002 56838020 GTCAGTAGGTGGCAAGGAG 60 56838044 56838063 GTGTTCATAGGTCAGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053990 ENSRNOT00000087379 2 1 1 60 8 83924733 83924751 TGTCACTCTGTTGATTGCC 58 83924691 83924709 GAGGAGATCCACCTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070858.1 ENSRNOG00000050039 ENSRNOT00000072615 3 1 1 82 8 88341569 88341789 GGGACCACAGAAATAGCAG 58 88341505 88341523 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041897 ENSRNOT00000063650 3 1 1 60 8 15461633 15461654 ACCCATCTCATCTGATAATGGA 59 15461594 15461618 CTCTCAACAAGTTCTTACTACTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363141 ENSRNOG00000056662 ENSRNOT00000087009 1 1 1 60 8 86817575 86817594 GCAGACATGTTGGAAGAGAC 59 86817534 86817552 TGTCCTGTGTCTGAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 3 1 1 80 20 896890 896914 TCTGCTATACCACTTCTACCC 59 896956 896974 CTATGCAGCCCACATAGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AC108323.3 ENSRNOG00000057487 ENSRNOT00000079725 1 1 1 73 20 11620795 11620814 GTACCAAGTGGCTTACTGTG 59 11620741 11620759 CAGAAGACTGACAGGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128114.1 ENSRNOG00000060230 ENSRNOT00000086101 3 1 1 83 16 61843358 61843376 AGCTTCCTGGAACTCAGTC 59 61843290 61843309 TCTTGCAGGTATTGTCCCT 58 Novel Rattus norvegicus 81 AC115322.4 ENSRNOG00000060449 ENSRNOT00000084027 3 1 1 108 3 175629393 175629411 AGTTTGTGGACCTGTACGT 59 175629584 175629751 GTACTCCTGTCAACCTCGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060214 ENSRNOT00000090465 2 1 1 60 3 111075489 111075510 CACTGCATATACTATCACTGGA 57 111075530 111075549 TGTCATTCTTTCACAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044415 ENSRNOT00000069682 3 1 1 60 3 96060118 96060139 ACACAGTCTCAACAGATCTCAG 60 96060159 96060178 CACATCTAAGCACCAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026137.2 ENSRNOG00000059145 ENSRNOT00000092012 1 1 1 60 16 65257161 65257180 ACACAGATCCATACAGACAC 57 65257202 65257221 TGTCTGTGTCTGTGTATCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046713.2 ENSRNOG00000061676 ENSRNOT00000080044 3 1 1 107 5 2739369 2741228 CTCTTCAGGACGTCTGAGC 60 2741298 2741317 AGTGAGCTGGACTATCTCCT 60 Novel Rattus norvegicus 81 AABR07031380.1 ENSRNOG00000058674 ENSRNOT00000090177 1 1 1 80 18 11722022 11723830 GAAAGAGAAGCCAAGGCAC 59 11723873 11723892 CGTTGCTTCCAAATCTTCGA 59 Novel Rattus norvegicus 81 AABR07031399.1 ENSRNOG00000060341 ENSRNOT00000083236 3 1 1 129 18 12283736 12283754 CAAGGATGTGAAGTGGAGC 59 12227022 12227040 CAGCAGGTAGTCATTCTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07000173.1 ENSRNOG00000059137 ENSRNOT00000082859 3 1 1 81 1 2762086 2762104 GTTCCGAGCCGAAATTCTG 59 2751375 2762044 TTTCTGGGAGATTCTTCATCCT 59 Novel Rattus norvegicus 81 AABR07000325.1 ENSRNOG00000059032 ENSRNOT00000085963 2 1 1 84 1 9848530 9848962 CCTGAAAGGGTTTCATTTAGCA 59 9849007 9849025 CATGAAGCACTGAACCAGC 60 Novel Rattus norvegicus 81 AABR07062812.1 ENSRNOG00000058659 ENSRNOT00000084969 1 1 1 81 6 10278966 10293490 GTCTCATGATCTCCTATGCCA 59 10278905 10278923 TTCTGCACTGGAGAAGGTC 59 Novel Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 3 1 1 61 14 58282729 58289709 TTTCAGCGACATGGAAAGG 59 58289731 58289752 GATATAAATTCAGTGGCCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015547.1 ENSRNOG00000058778 ENSRNOT00000083114 3 1 1 83 14 62674704 62674723 CAAGCATGTGCATTTAACGA 58 62674768 62677440 TCCTCTTGTCTTCTTTGCTG 58 Novel Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 1 1 1 60 5 24974448 24974468 TACAGGCTATGAACTTTGTGC 59 24970313 24974429 ACCTTTCCTGATGAATGAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015648.1 ENSRNOG00000057570 ENSRNOT00000081907 3 1 1 96 14 68704181 68704199 GAATGAAATGGAGGGCGTG 59 68699039 68704121 AATCTGAAAGCAGCTTGGG 58 Novel Rattus norvegicus 81 AABR07015654.1 ENSRNOG00000054916 ENSRNOT00000090988 1 1 1 80 14 68876577 68876596 AGCCAACAGGATTTAGTGGA 59 68802064 68876535 CACATTCTTCAAGCTTGCCA 60 Novel Rattus norvegicus 81 AABR07000484.1 ENSRNOG00000054373 ENSRNOT00000077965 1 1 1 81 1 14527830 14527848 ACTTGGCCCTGAACTACTG 59 14527893 14549230 ATCCAGCTTAGTGCCACTC 60 Novel Rattus norvegicus 81 AABR07030221.1 ENSRNOG00000053130 ENSRNOT00000084816 2 1 1 63 10 76633570 76633588 GCTCACCTAGGAACCAGTC 60 76633615 76641211 TCTTCACAGCACCTCACAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07015812.2 ENSRNOG00000054484 ENSRNOT00000084239 1 1 1 72 14 78398034 78398053 CATGTGATATCAGAGTCGGG 58 78393225 78393243 TCAAGAGAAGCCTCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061261.3 ENSRNOG00000060801 ENSRNOT00000081492 3 1 1 122 4 112648993 112649012 CACTACCTCCTACTCCTCCT 59 112651390 112651408 GGCCAGTCTATGTAATGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07048046.1 ENSRNOG00000060050 ENSRNOT00000078601 1 1 1 61 5 58717988 58718006 GGTGCGTTAAGATGGAGGT 60 58718031 58721873 TCAGAGAAACACCACCGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07061328.1 ENSRNOG00000056916 ENSRNOT00000089373 2 1 1 87 4 116834597 116834615 TTAAGGACAGGAGGACCAG 58 116831636 116834546 GAACACTGAAGATGGCCTG 59 Novel Rattus norvegicus 81 AABR07030363.1 ENSRNOG00000051683 ENSRNOT00000079789 1 1 1 80 10 82582209 82582404 CCAACCATTCGTTGTTCTG 57 82582147 82582165 CTGGACAGTAAGCCTTCAG 58 Novel Rattus norvegicus 81 AABR07048139.1 ENSRNOG00000057107 ENSRNOT00000078497 3 1 1 93 5 64438015 64438033 AAGGAAGAAGCCAGGAAGG 59 64438089 64440481 TCTCGGGAACTATGATGTCC 59 Novel Rattus norvegicus 81 AABR07015994.1 ENSRNOG00000051567 ENSRNOT00000079143 2 1 1 80 14 89947708 89947726 GTGCCAATCACTATGAGCC 59 89898024 89947666 GGATTGACTTGTCTGTCTCCT 60 Novel Rattus norvegicus 81 AABR07030482.1 ENSRNOG00000053646 ENSRNOT00000085625 1 1 1 80 10 89777863 89778357 CATTGAAGGGTTTACTCCAGC 59 89778399 89778417 AACCTGACGGTTACTTGGT 59 Novel Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 1 1 1 68 1 21438021 21465605 TACTTCGTTCCTTGCACAC 58 21465637 21465655 AATGCATAGATGAACCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC128759.3 ENSRNOG00000052726 ENSRNOT00000086202 2 1 1 60 1 22454804 22454825 AGTGTTTACTCTGTGTTCTGGA 59 22453893 22454783 GAACAAGGTGTGGTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030563.1 ENSRNOG00000057017 ENSRNOT00000080531 2 1 1 103 10 93137697 93137716 AACACCAAATTCTTCCAGGA 57 93137863 93137882 CAGATGGACAGATAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 1 1 1 70 5 85124148 85137775 TGATTCTAGCTGAACCGGG 59 85137807 85137827 GGATCACCACTCATCATAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061453.2 ENSRNOG00000057351 ENSRNOT00000084886 3 1 1 85 4 125583806 125634757 ACCACAAGAATGAGAACAGGA 59 125634804 125634822 TTTCAAGTCTGCATCACGG 59 Novel Rattus norvegicus 81 AABR07061573.1 ENSRNOG00000055841 ENSRNOT00000085472 3 1 1 83 4 134096314 134096333 ATCACAGGATAGCTGTGGTC 59 134096378 134101643 CGACAGACAGGAATCTTCGT 60 Novel Rattus norvegicus 81 AABR07049032.1 ENSRNOG00000054520 ENSRNOT00000083921 3 1 1 63 5 100753043 100753061 GGACTGGGATTCTTGAGGT 59 100757600 100757618 AGCTGGTTGTCTGTAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016722.2 ENSRNOG00000060106 ENSRNOT00000080488 3 1 1 81 14 112606343 112606363 CAAGAGCATATGACAGGAGAC 58 112606406 112607687 CAATGGGATGCCTCATTCC 59 Novel Rattus norvegicus 81 AABR07001018.3 ENSRNOG00000055826 ENSRNOT00000084492 2 1 1 80 1 33722229 33722248 CTCCAACAGCAAGATTTCCT 58 33722290 33723027 TTCTCTGTTCATGTGGTTGC 59 Novel Rattus norvegicus 81 AABR07016934.1 ENSRNOG00000058309 ENSRNOT00000081520 2 1 1 80 15 5142797 5142816 AAGACAGTAGATGGCCTAGG 58 5141628 5142755 CAATGACTCCAGGAACTTGG 59 Novel Rattus norvegicus 81 AABR07001018.2 ENSRNOG00000054020 ENSRNOT00000088968 2 1 1 98 1 33967029 33979875 CCTCCAAGAAGTTGAAGGT 57 33966949 33966970 GGATAGCTTTGAACTCATTCAG 57 Novel Rattus norvegicus 81 AABR07062061.1 ENSRNOG00000053096 ENSRNOT00000083680 2 1 1 89 4 159340943 159341288 GACTTCACTGTACAGCTGG 58 159340872 159340891 GTATCTCTTCCAACCCATGC 59 Novel Rattus norvegicus 81 AABR07017176.1 ENSRNOG00000057844 ENSRNOT00000084363 3 1 1 80 15 15159562 15185088 GCTAACGATGAAAGGAACCC 59 15159501 15159520 GTATGTCACAGGTGGTAGGG 60 Novel Rattus norvegicus 81 AABR07001233.1 ENSRNOG00000053328 ENSRNOT00000087610 1 1 1 80 1 39011832 39011852 GAAGATGCCTTGGATGATCAG 59 39008708 39011790 CTTCTCTGACCAACCTCCT 58 Novel Rattus norvegicus 81 AABR07062367.1 ENSRNOG00000055253 ENSRNOT00000088485 3 1 1 87 4 172436458 172436476 AGAGTGGATCAGAGCTGTG 59 172436524 172438187 TGAAAGCAATTCTGTAGCTGAG 59 Novel Rattus norvegicus 81 AABR07062453.1 ENSRNOG00000051774 ENSRNOT00000085633 3 1 1 112 4 177687314 177688602 CTCTTGCAGTACAACTCCA 57 177687220 177687239 TACAACTAGGCTCTAAGCCA 58 Novel Rattus norvegicus 81 AABR07001448.1 ENSRNOG00000059546 ENSRNOT00000087973 2 1 1 104 1 44818213 44818231 CTTTGACTGAGCAGAGTGG 58 44818299 44834903 TTCTTCTTTCTCTGCAGCC 58 Novel Rattus norvegicus 81 AABR07017649.2 ENSRNOG00000058787 ENSRNOT00000080877 2 1 1 85 15 29652321 29652565 CTTTGTCTGGATGTAATATGGCC 60 29652258 29652276 CTCCAGGGTGACTTCTTCC 59 Novel Rattus norvegicus 81 AABR07049695.2 ENSRNOG00000051636 ENSRNOT00000089245 3 1 1 83 5 133710459 133710477 TAGAGGAGAGTGTGATCCG 58 133710524 133711052 GACTTGTTTCTGGGTCCTC 58 Novel Rattus norvegicus 81 AABR07001464.1 ENSRNOG00000053052 ENSRNOT00000089275 1 1 1 80 1 45826187 45826205 TCTGCTGTCTAGACATCCA 57 45823380 45826144 GAGAAAGGCCTTGTTTATGC 58 Novel Rattus norvegicus 81 AABR07017765.1 ENSRNOG00000058922 ENSRNOT00000083279 2 1 1 80 15 30752070 30752094 TAGCATGGAAGTCATTACTAGAGAC 60 30752126 30769956 AATATCCACTAATTCCTAGGGAGAG 59 Novel Rattus norvegicus 81 AABR07001518.1 ENSRNOG00000055141 ENSRNOT00000081808 2 1 1 80 1 49132532 49133879 TCTTCAGAAACACAGGATGC 58 49133921 49133940 TTCTGTGACTTTGCAAACCA 59 Novel Rattus norvegicus 81 AABR07062885.2 ENSRNOG00000057197 ENSRNOT00000090924 1 1 1 92 6 12716923 12716941 ACATGGCAAGATCCAGACC 60 12714958 12714976 AAACTCCAAGTTCACCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 2 2 2 81 5 142406975 142406993 GCCATACAGACATCACCGT 60 142405994 142406931 ATGTGCTGGTCTGTGATAGG 60 Novel Rattus norvegicus 81 AABR07001592.1 ENSRNOG00000054756 ENSRNOT00000089416 1 1 1 60 1 53983048 53983691 TAGAACAACAGGTTAAGCTCTC 58 53983710 53983730 ATATTCACATTAGCCTCCAGG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07049884.1 ENSRNOG00000054370 ENSRNOT00000084152 3 1 1 101 5 142429261 142429279 TTCCTGTGGCAGACATCTC 59 142429341 142433582 GATCATGCTGCTTCCTTTATCC 60 Novel Rattus norvegicus 81 AABR07049960.2 ENSRNOG00000059532 ENSRNOT00000090537 2 1 1 158 5 146306423 146306441 TCATCGTGAAGGACTTGGG 59 146307865 146307883 GGAGTTTCATTGCCTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049961.1 ENSRNOG00000052753 ENSRNOT00000082281 2 1 1 81 5 146319730 146320629 TTCATCTAAGCCTCAGGTGAG 59 146320670 146320690 GCTATCATTTGTCTTCAGCCG 60 Novel Rattus norvegicus 81 AABR07018059.1 ENSRNOG00000053491 ENSRNOT00000082495 3 1 1 82 15 37995482 38006320 TGAGCAAAGTTCCTCTAGCT 59 38006365 38006383 AGAGCCTCCTGTTGTATCC 59 Novel Rattus norvegicus 81 AABR07063350.1 ENSRNOG00000061357 ENSRNOT00000090494 3 1 1 112 6 29862760 29862858 CAGACAGCAGATGTTGCTG 59 29862666 29862685 GTTGCCCAAAGTCAGAAAGG 60 Novel Rattus norvegicus 81 AABR07031989.1 ENSRNOG00000055180 ENSRNOT00000081941 3 1 1 83 18 42069715 42069733 TTCGCCTGATCTCAATGCT 60 42069779 42077590 ACCAGCAAATAGCAATCTGG 59 Novel Rattus norvegicus 81 AABR07018100.1 ENSRNOG00000052751 ENSRNOT00000085733 1 1 1 85 15 39587381 39587953 AAATGTTGGCAGACTGGTG 59 39588002 39588020 TATGTCTGCAGTGGTCCTC 59 Novel Rattus norvegicus 81 AABR07063509.1 ENSRNOG00000052377 ENSRNOT00000085423 1 1 1 80 6 32440844 32460204 CCATTCTCCAGAGCTGGAG 60 32440782 32440802 CATCTGTGCAAGGACATAGAC 59 Novel Rattus norvegicus 81 AABR07018124.1 ENSRNOG00000051452 ENSRNOT00000077399 2 1 1 80 15 41408576 41408946 CATCACAAATGGTTGGGTCAG 60 41408988 41409006 TGGTTGGAGTTGTCCAGAG 59 Novel Rattus norvegicus 81 LOC102547734 ENSRNOG00000056918 ENSRNOT00000084448 2 1 1 83 15 42194625 42194643 AGGCTGCTAAAGACGATGG 60 42194688 42203171 CTTCCCAAAGTGAATCCTGTG 59 Novel Rattus norvegicus 81 AABR07063558.1 ENSRNOG00000056987 ENSRNOT00000091189 1 1 1 60 6 35293678 35309656 CATTCATGAGATTCTGAATCGC 58 35309676 35309695 ATAGCTCAGTACTCACTGGA 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07032171.1 ENSRNOG00000052184 ENSRNOT00000083820 1 1 1 82 18 50773148 50785829 ACATTTCAAGAACAGCCCTG 59 50785874 50785892 TTGGCTCCATCAACAAGGT 60 Novel Rattus norvegicus 81 AABR07018170.1 ENSRNOG00000061107 ENSRNOT00000085399 3 1 1 78 15 44774701 44774719 GAGTATGTGCTGAAACGCG 60 44775531 44775550 TGAAACCATTTCTTCCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050393.1 ENSRNOG00000051876 ENSRNOT00000087999 2 1 1 108 5 163715237 163715255 CTGAGTCCTCCAGGTACCT 60 163714083 163715166 CTGAGCATATGGAGACCTGG 60 Novel Rattus norvegicus 81 AABR07063654.3 ENSRNOG00000061233 ENSRNOT00000091337 3 1 1 83 6 40092194 40093219 ATCGGAAAGGACTTCTTAGGG 59 40092131 40092152 CCATGTTCATTTCTTCCCTGAC 60 Novel Rattus norvegicus 81 AABR07032277.1 ENSRNOG00000054651 ENSRNOT00000091806 1 1 1 80 18 59489731 59492162 CAGGATCTCCCTCTGTGAG 59 59492206 59492224 CCTACGTGTGCATCTTCCT 60 Novel Rattus norvegicus 81 AABR07063682.1 ENSRNOG00000060065 ENSRNOT00000078200 1 1 1 80 6 41751481 41773177 GCATAGGCTGAGCATATGTG 59 41751420 41751441 ATATCCAGACTATAACACGGGC 60 Novel Rattus norvegicus 81 AABR07050484.1 ENSRNOG00000061404 ENSRNOT00000092120 2 1 1 99 5 166894648 166894667 AACTCCTAGTCTGTGCTGTG 60 166894729 166896783 GGTAATGCCAAACCGTCTC 59 Novel Rattus norvegicus 81 AABR07018459.1 ENSRNOG00000057847 ENSRNOT00000086871 1 1 1 81 15 58834577 58834596 GCCAAGACTGTGGTATTCAG 59 58834639 58834846 TCTCCGTCATTCTTCTCCTG 59 Novel Rattus norvegicus 81 AABR07050648.1 ENSRNOG00000059071 ENSRNOT00000089887 2 1 1 68 5 172176793 172176811 ACACAGTGAAGATGGAGCC 60 172176022 172176040 AGAGCCATTGGTGGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032439.1 ENSRNOG00000061537 ENSRNOT00000079627 1 1 1 102 18 65734100 65737140 CACAAGATTGATTCGGATACAC 58 65737201 65737221 GCTTGATGTGTACTAAGTCGA 58 Novel Rattus norvegicus 81 AC134759.1 ENSRNOG00000057198 ENSRNOT00000088115 3 1 1 75 1 82371651 82371669 TTCAGCTGACCTGTTCTCC 59 82372846 82372865 ATTGTCGTCTTCTTTCTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 2 1 1 70 15 84004962 84004982 GATCTACATCCATCTTGCCTC 58 84005013 84009871 GGAGCAATGCAAACTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063901.2 ENSRNOG00000055851 ENSRNOT00000083463 2 1 1 60 6 55013269 55013287 GGAATCTCTGGATGACGGA 59 55036128 55036148 GTCTGATTTCGTCTTCATGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032593.2 ENSRNOG00000057541 ENSRNOT00000080563 3 1 1 84 18 72876865 72877559 GACAGCTTGCGATTCTAGAC 59 72876800 72876818 CCACAGAATGCTGTCTGGA 60 Novel Rattus norvegicus 81 AABR07019091.1 ENSRNOG00000061423 ENSRNOT00000077263 3 1 1 80 15 87679338 87679876 TTTGCCTTTGTGTCTAGTGTC 59 87679918 87679936 GAGCAAATTCACGAGCAGG 60 Novel Rattus norvegicus 81 AABR07064139.1 ENSRNOG00000061935 ENSRNOT00000085970 3 1 1 95 6 66180570 66180590 TGAAACTTAAGCTGAGGTCAC 58 66180646 66181498 GCCAAATACAGTGGTGACTG 59 Novel Rattus norvegicus 81 AABR07051400.2 ENSRNOG00000059495 ENSRNOT00000085689 2 1 1 81 3 9333285 9333680 ATACTGGAGCCAATGGACC 59 9333222 9333241 GAAGTGTTGAAACTGCAGGT 59 Novel Rattus norvegicus 81 AABR07064468.1 ENSRNOG00000057565 ENSRNOT00000091064 1 1 1 80 6 81618394 81622265 AGAGAATCACCTGGCTTGG 59 81618332 81618350 CGCTTGGGTAAACTGTGTC 59 Novel Rattus norvegicus 81 AABR07019387.1 ENSRNOG00000056606 ENSRNOT00000091078 2 1 1 80 15 103505132 103505508 CTAGAAACTCAAGGTACCCTG 58 103505549 103505568 TTCTTTCAGTCAACTGGGTG 58 Novel Rattus norvegicus 81 AABR07019387.2 ENSRNOG00000058656 ENSRNOT00000078015 3 1 1 83 15 103524433 103533407 TACACAAAGATTACGGCGG 58 103533452 103533472 AAATTAGTCTCTGGTGTGCTG 58 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 2 1 1 79 15 103583563 103583581 CATGTTGGACATACTCGGC 59 103576118 103583520 ATACCTGTTTGATGCAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051555.1 ENSRNOG00000056393 ENSRNOT00000080510 1 1 1 89 3 16955697 16955715 GTGAACTGCATCAGACAGG 59 16955768 16955988 CACAGGTACCAGATACCGA 58 Novel Rattus norvegicus 81 AABR07051555.1 ENSRNOG00000056393 ENSRNOT00000080510 2 1 1 89 3 16955697 16955715 GTGAACTGCATCAGACAGG 59 16955767 16955988 CACAGGTACCAGATACCGAG 59 Novel Rattus norvegicus 81 AABR07051592.1 ENSRNOG00000052953 ENSRNOT00000081264 3 1 1 80 3 17648872 17649009 TGCTGTGGATAACAGATGGA 59 17649051 17649070 CAGTTTCTCCCAGAGATGCA 60 Novel Rattus norvegicus 81 AABR07032843.1 ENSRNOG00000057359 ENSRNOT00000088232 3 1 1 92 18 85642565 85643899 AAAGGACAGGGAAATATGCA 57 85643953 85643972 TTAGAGTCCAGTCCAGAGTG 58 Novel Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 2 1 1 60 15 105845864 105849404 ACATAGACATAGACATGAACGC 59 105849425 105849443 TCATGGACGTTTGGTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019442.2 ENSRNOG00000059922 ENSRNOT00000090685 1 1 1 80 15 105942199 105942220 TCAGAATCAGGACAGAATTAGG 57 105942261 105942930 GAGTGTGACTCTGAAAGGG 58 Novel Rattus norvegicus 81 AABR07051646.1 ENSRNOG00000058261 ENSRNOT00000080399 3 1 1 81 3 18653581 18653602 TCTCCTAAGTTCATTTCCTCAC 58 18653644 18654027 CCATTGGTTCCCAGAATCC 58 Novel Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 3 1 1 60 6 97206228 97206248 CCATCTTATTGTGGACCATGG 59 97205306 97206206 GATGTCGTGTTCTGCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003049.2 ENSRNOG00000053564 ENSRNOT00000080393 3 1 1 68 1 95060816 95060834 TTTGTGAAGTTGCTGGCAG 59 95060866 95061349 CAAATGACCCACAGAGCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07019811.1 ENSRNOG00000055623 ENSRNOT00000084827 2 1 1 86 13 4230314 4240820 AAATGTAACATGGACAGCAGAG 59 4240862 4240885 CAGTCTATTCCTTCAAGATCACAC 59 Novel Rattus norvegicus 81 AABR07064918.1 ENSRNOG00000053526 ENSRNOT00000087533 1 1 1 80 6 100671200 100673886 ATTGAACAATGCAGGGACTC 59 100671139 100671157 ACTTCAGCCCTGGATTCTC 59 Novel Rattus norvegicus 81 AABR07033607.1 ENSRNOG00000058541 ENSRNOT00000078276 1 1 1 106 11 29700494 29700512 AGTTCGTGATCTACCCTGG 59 29699397 29700424 AAATGGCATCTGGGAAAGG 58 Novel Rattus norvegicus 81 AABR07020905.1 ENSRNOG00000059385 ENSRNOT00000080733 1 1 1 80 13 45575438 45575768 GCTTGGTTATGACAGAATTGG 58 45575808 45575828 ATGAACTCCTTCATCAGTCAG 58 Novel Rattus norvegicus 81 AABR07003310.2 ENSRNOG00000056203 ENSRNOT00000081118 3 1 1 91 1 105035813 105039435 CCTTTACAGTTGCTTCCAGG 59 105039487 105039507 GCTGACACTGCTAATGATGAG 59 Novel Rattus norvegicus 81 AABR07065122.1 ENSRNOG00000056386 ENSRNOT00000090377 1 1 1 93 6 110840509 110840529 CCAGAATCCTCCTATTGTCCC 60 110842290 110842308 CTTTGGCTCTTTCCTTGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020979.1 ENSRNOG00000060611 ENSRNOT00000090709 1 1 1 87 13 49965983 49970696 ACATTCAAACAGGTGCTGAG 59 49965915 49965936 CCTCTTGAACAAAGTTTGTAGC 58 Novel Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 3 1 1 63 3 36633392 36633411 ACCGTGACTTTCCATAATGC 59 36581248 36633366 AAGGGTTTAACCAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003354.1 ENSRNOG00000052081 ENSRNOT00000089175 2 1 1 81 1 107149580 107149598 CCAAGAAGAACACAAGGCA 58 107144615 107149535 TCATTCGGTGCTTTGAAGG 59 Novel Rattus norvegicus 81 AABR07021023.1 ENSRNOG00000052244 ENSRNOT00000078629 1 1 1 81 13 53875993 53877569 GGGACCTTAGGAAGATCCA 58 53877614 53877632 CCGAACTCCATCACTTGTG 59 Novel Rattus norvegicus 81 AABR07021221.1 ENSRNOG00000052921 ENSRNOT00000086824 3 1 1 64 13 61423320 61423338 AGAAACAAACATCGAGGCC 59 61422836 61422859 GTAGGAGAAGACTTAGTCTATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052322.1 ENSRNOG00000061267 ENSRNOT00000086972 3 1 1 81 3 47554632 47554650 TCCTCATCGTCCTAGTCCA 59 47552676 47554589 ACTGTCTAGACAACATAGGCA 59 Novel Rattus norvegicus 81 AABR07065282.1 ENSRNOG00000052153 ENSRNOT00000081584 1 1 1 80 6 119151204 119185098 ACCACTGTGAGCTCTTCTG 59 119151142 119151164 GGTAAGTTGACCGATTGTTAGTC 60 Novel Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 3 1 1 66 3 53506077 53506095 TGTGAGTGAAGTCAACCCA 59 53444379 53506047 AAACACCTTGCCAAACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052441.1 ENSRNOG00000052018 ENSRNOT00000092009 1 1 1 80 3 54152872 54220211 GATTTGTGCTATGGATTCTGC 58 54220252 54220271 GTCTCCATTGGTCTGTAGAG 57 Novel Rattus norvegicus 81 AABR07003468.1 ENSRNOG00000058191 ENSRNOT00000082080 3 1 1 86 1 110995835 111001830 GACAGAAATGCAGAGAATTCC 57 111001877 111001896 CACATTGTACACAAGCACAG 58 Novel Rattus norvegicus 81 AABR07003563.1 ENSRNOG00000055122 ENSRNOT00000078995 1 1 1 121 1 115606778 115606798 GACCTATAATGTCTCCTTGGG 57 115603488 115603506 AGAAACCTGAGGTTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003563.1 ENSRNOG00000055122 ENSRNOT00000078995 2 1 1 122 1 115606778 115606799 AGACCTATAATGTCTCCTTGGG 59 115603488 115603506 AGAAACCTGAGGTTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021492.1 ENSRNOG00000056431 ENSRNOT00000089000 3 1 1 80 13 74612234 74616791 ACAAATACAGGTGAGCTACTC 58 74612174 74612192 CTGTTCTCGTGGTATCCCT 59 Novel Rattus norvegicus 81 AC108574.2 ENSRNOG00000057903 ENSRNOT00000086178 2 1 1 80 11 60048986 60049502 CTCAAGAATGCCAATAAGAGTCC 60 60049539 60049560 GGCCACCATGTAATAGATTCTG 59 Novel Rattus norvegicus 81 AABR07052529.1 ENSRNOG00000061018 ENSRNOT00000079761 3 1 1 85 3 60249830 60252015 CAGAAGAACACATACAGGTGAG 59 60249766 60249784 TATGTTTGGCAAGGTGGTC 58 Novel Rattus norvegicus 81 AABR07021589.1 ENSRNOG00000053653 ENSRNOT00000082244 2 1 1 102 13 79662517 79662536 ACCATTTGTCTACCACAGCT 59 79662601 79663043 TCAATCGAAGGCCCTTGAG 60 Novel Rattus norvegicus 81 AABR07052550.2 ENSRNOG00000051639 ENSRNOT00000089819 2 1 1 82 3 61093130 61099465 GGAAGAGAATGAATTTGAAGGC 58 61093069 61093091 CTCTTCCATAGACTTCAACTCAG 59 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 2 3 3 80 6 125287309 125289661 ATATGACCGCCACAATTGC 59 125287247 125287266 CTGTCATCAATCCACTTCGT 58 Novel Rattus norvegicus 81 AABR07003841.1 ENSRNOG00000057034 ENSRNOT00000087187 2 1 1 93 1 118977813 118977831 CATGAAGACAAGCCCATCC 59 118976540 118976560 CTCCGTATTGTCTAGAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034464.1 ENSRNOG00000054633 ENSRNOT00000087385 1 1 1 60 11 72774789 72774808 TAAGCACATCAAGGAAGCAG 58 72774314 72774332 TGTGGAGATGCCTTCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000085252 3 1 2 81 6 127196895 127199441 CCGTACAACAGGCAAACAC 60 127196832 127196850 GTCTCACCCTTCAGAGTCG 60 Novel Rattus norvegicus 81 AC094636.1 ENSRNOG00000059578 ENSRNOT00000078881 2 1 1 86 6 127591693 127591711 GAGGTCTTCAGCAAGGAGG 60 127591009 127591028 CAGTACAGTCTTGTGCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034573.1 ENSRNOG00000051670 ENSRNOT00000087988 1 1 1 60 11 79133873 79133892 GTGTCAGAAACATCCTAGCA 58 79134099 79134120 GTATAATTTCTCCTGAGCTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021734.1 ENSRNOG00000056636 ENSRNOT00000077414 1 1 1 96 13 88601400 88602441 AAACAAGCATCAAGGTGGC 59 88601322 88601340 CAAGCAATTCATCGTCCCA 59 Novel Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 3 1 1 93 11 83801329 83814220 CAAATCATGGCCTGAAGCT 59 83814277 83814295 ATTATTGCCCTGCCATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004189.1 ENSRNOG00000056064 ENSRNOT00000089979 2 1 1 80 1 129531124 129531143 TTTGGAGGTGGAATGAAGGT 59 129531470 129544596 GACTTGTCTCCTCTTTCTTGC 59 Novel Rattus norvegicus 81 AABR07022039.1 ENSRNOG00000054076 ENSRNOT00000091867 2 1 1 66 13 103758533 103758551 ATTTGTTGCACGGTCAAGG 59 103758578 103770788 TGACTCCACATCAAACAAAGTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07022061.1 ENSRNOG00000061342 ENSRNOT00000078247 3 1 1 82 13 105281908 105281928 TGTACCTTCGTCTTCTCACTG 60 105281966 105282746 GGAAGTCCATGTACTTTATTTCTGG 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 2 1 1 95 1 134951534 134951724 TTTCCAATCTGGAGAAAGGG 58 134951458 134951477 TAAACAAGTGCCTGGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066060.1 ENSRNOG00000055763 ENSRNOT00000086927 1 1 1 87 9 1090436 1115785 TTTAGAAGTTCCTGCCGAGG 60 1115835 1115853 CTTCTGCTGTTCAATGCCC 60 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000082137 2 1 2 87 12 10130526 10130544 AACTTGTGCCCAAAGTTGC 60 10130275 10130475 AGCCTTCTGGCAGAATCTG 60 Novel Rattus norvegicus 81 AABR07053283.1 ENSRNOG00000059974 ENSRNOT00000083083 1 1 1 80 3 97133590 97133610 ACTCAATATCCTGCCCATCTC 60 97133432 97133549 GGACTGAGATTCTCATCGGG 60 Novel Rattus norvegicus 81 AABR07065933.1 ENSRNOG00000057960 ENSRNOT00000091437 2 1 1 80 6 146979394 146979412 GAAACAATCAGCCAGACCG 59 146978116 146979350 CCTGATGAAATCACCTGCC 59 Novel Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537,ENSRNOT00000078486 3 2 2 91 3 108624645 108640203 TCAAGTAGCACGATGTGGAG 60 108624573 108624591 TCAAACAGTCCTTTGCAGC 59 Novel Rattus norvegicus 81 AABR07053483.1 ENSRNOG00000056645 ENSRNOT00000085500 2 1 1 60 3 109815390 109815411 ATTCTCATTTAGAGGATGTGCC 58 109815233 109815253 AGGTGGTAGAAAGACAATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035622.1 ENSRNOG00000051614 ENSRNOT00000082889 2 1 1 81 12 20543465 20543858 GTGGAATCTGGGAACTCAG 58 20543402 20543420 CCTGGACTCCAGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 3 1 1 68 3 120257560 120259518 CATCTCATCATTGCTAGACGA 58 120259544 120259566 GTCCAGAATGAATAACTCAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053710.1 ENSRNOG00000053290 ENSRNOT00000078027 1 1 1 82 3 121564468 121566765 AAATCCTGACCAAAGATCAGC 59 121564406 121564424 GATGCGAATGAGTCTGGTG 59 Novel Rattus norvegicus 81 AC109886.1 ENSRNOG00000055574 ENSRNOT00000077128 1 1 1 81 3 124615694 124616584 CCTTTCACTGGTGACAGGT 60 124616629 124616647 CTCTTCCACCGTCTAGGAG 59 Novel Rattus norvegicus 81 AABR07025023.1 ENSRNOG00000055076 ENSRNOT00000082578 1 1 1 82 16 26081426 26098258 GTAACGACAATGGTGTGCTG 60 26081363 26081381 GAAGACGAGACCTCCTGTG 60 Novel Rattus norvegicus 81 AABR07035790.2 ENSRNOG00000061009 ENSRNOT00000085223 3 1 1 86 12 22512874 22530798 TCCAGAAGTTTCTGGTCTAAGAG 60 22530843 22530862 GTTGAATTTGTGCTGCTTGG 59 Novel Rattus norvegicus 81 AABR07067005.1 ENSRNOG00000061592 ENSRNOT00000078504 2 1 1 81 9 25871648 25871666 ATTCCCAGAACCCTGTTCC 59 25851254 25871604 CCATGTGCATGATTCCTCAG 59 Novel Rattus norvegicus 81 AABR07067034.1 ENSRNOG00000052150 ENSRNOT00000088992 3 1 1 160 9 27210685 27213024 TGGATCATCCCACATGGAC 59 27210543 27210563 AGTAAATGGGTTTCCAGAGGG 60 Novel Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 1 1 1 93 12 33210019 33212893 GATCTCTGCACCTCAGGTG 60 33209944 33209962 GTTCCAGATGAGCCAGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072515.1 ENSRNOG00000061819 ENSRNOT00000084264 2 1 1 62 16 54765147 54765165 CTCCTTCCTGCTTCCTCTC 59 54752473 54765121 AGGGTCTCTTCCTAGTGAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07025937.1 ENSRNOG00000053393 ENSRNOT00000085445 2 1 1 80 16 55897922 55897940 ACACATGCAAAGACCAGTC 58 55897983 55899652 CTTCAGAACAAACTCCCAGG 59 Novel Rattus norvegicus 81 AABR07025953.1 ENSRNOG00000053342 ENSRNOT00000081303 1 1 1 87 16 56054679 56054697 GTACCGACTCTGTTCCTGG 60 56048651 56054633 AAGAAAGATCTGTCTATCTCCACC 60 Novel Rattus norvegicus 81 AABR07054341.2 ENSRNOG00000056754 ENSRNOT00000085752 2 1 1 74 3 148997113 148997131 CCTAGATACTGGGATCCGG 58 148999131 148999149 AAACATCAAGGTCTGCTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC135822.3 ENSRNOG00000061375 ENSRNOT00000088225 1 1 1 65 3 150414910 150414928 CAGAATATGGAGCCCAGGG 60 150415794 150415812 AGTTGAGGAGTAGCCAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005779.5 ENSRNOG00000057003 ENSRNOT00000084011 1 1 1 80 1 198407930 198407949 CATATGAATCCTATGCCCGA 57 198407635 198407888 CTTGGTGAAGAACACATGTC 57 Novel Rattus norvegicus 81 AABR07026021.1 ENSRNOG00000055088 ENSRNOT00000086846 3 1 1 122 16 59517083 59517101 AACGTGTGCTTCTAGGAGG 59 59524208 59524226 CTTCTTCTGTGCCTTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC123083.1 ENSRNOG00000060182 ENSRNOT00000078386 3 1 1 81 1 201857597 201857618 TCCTCTTCTCTGTTCATAGACG 59 201857658 201858891 CAGAAGTCGAAGATGCATCAC 60 Novel Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 2 1 1 64 3 155679390 155687588 GAACCAAGGGTTTCGAAGC 60 155679344 155679362 TCATAGACATGGCACTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036407.2 ENSRNOG00000054442 ENSRNOT00000080098 2 1 1 80 12 42217777 42218149 GACTAAAGTTTGTTCCCAGGG 59 42218188 42218209 ACAGAAATGAAGAACCAAGGTG 59 Novel Rattus norvegicus 81 AABR07054490.1 ENSRNOG00000061347 ENSRNOT00000090335 2 1 1 81 3 156589900 156589918 GATGGCAGCCTTGAAACTG 60 156581804 156589855 AAGATTGTCCAGGACCCAC 59 Novel Rattus norvegicus 81 AABR07036442.1 ENSRNOG00000051935 ENSRNOT00000088427 2 1 1 76 12 43321014 43321032 ACTCCTGGGATTGATGAGG 59 43321072 43323426 TTGAGTGTCACAGGGACTG 59 Novel DesignRelaxed Rattus norvegicus 81 AC113785.1 ENSRNOG00000059361 ENSRNOT00000088569 1 1 1 80 16 69022587 69022605 CAAGCCATTCCACTCAAGG 59 69009857 69022544 AGCCAGAAATCACCTAGCTC 60 Novel Rattus norvegicus 81 AABR07067855.1 ENSRNOG00000061886 ENSRNOT00000089791 3 1 1 80 9 68061634 68061652 TTAGCAATCTTCCTACCGC 57 68043028 68061591 AATGTAGCTCCTTTCTCTGG 57 Novel Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 1 1 1 67 9 69756774 69756792 ATGGGATTGTTTGAGAGCC 58 69756823 69770255 AATCTGCATAAGCAGCGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 1 1 1 60 12 50979106 50979842 TGCTGTGAATATCCCAGGG 59 50979864 50979884 TGTCAGTCAACCAAACATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026441.2 ENSRNOG00000059780 ENSRNOT00000081562 3 1 1 60 16 76772698 76772718 GGATGTGTAGGTTGTAGACGT 60 76763668 76763687 TCTGTATTTGTCAGGTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054755.1 ENSRNOG00000052268 ENSRNOT00000084074 2 1 1 95 3 168821028 168821046 CTATCCCATGATGCTCTGC 58 168821105 168821697 TTTGTAGTCCGCAACTGTG 58 Novel Rattus norvegicus 81 AABR07026473.1 ENSRNOG00000057840 ENSRNOT00000085640 3 1 1 96 16 77995695 78013010 TCCTTTCTGCAGAGCTGAG 59 78013068 78013088 ATTGTTGTCGTACTCTGAGGG 60 Novel Rattus norvegicus 81 AABR07068066.2 ENSRNOG00000056522 ENSRNOT00000089903 2 1 1 94 9 80669257 80669277 CCTTTCCCTTCTAGATCCAGG 59 80666961 80669202 AAACATGGACTGTAGGGTGG 60 Novel Rattus norvegicus 81 AABR07037528.1 ENSRNOG00000061366 ENSRNOT00000082703 1 1 1 85 X 23218331 23218350 TGATCTGATCATGACAGCCA 59 23218398 23218989 CTTCCCAAACCTGGTTGAC 59 Novel Rattus norvegicus 81 AABR07068094.1 ENSRNOG00000052509 ENSRNOT00000078476 1 1 1 80 9 83398648 83398804 ATTCAGCAGGTCTTGGTCC 60 83398848 83398866 TCGGTTGAAGGTTCTGGTC 60 Novel Rattus norvegicus 81 AABR07068094.2 ENSRNOG00000055588 ENSRNOT00000085866 1 1 1 80 9 83420141 83420159 TCGTTCAGAAGGAGAGGAG 58 83419338 83420097 TCCTACCGAACCAAGACAG 59 Novel Rattus norvegicus 81 AABR07026509.1 ENSRNOG00000061179 ENSRNOT00000083285 3 1 1 81 16 79816757 79816775 CTCAGACTCCTGGTCACTG 59 79816818 79817092 TCCCTTACCCTGTAGGTAGAG 60 Novel Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 1 1 2 87 X 35973357 35975098 CTTCAGAAGTGCCATGGTC 59 35972579 35972598 CGAACTTGATCTCACAAGGG 59 Novel Rattus norvegicus 81 AABR07006475.1 ENSRNOG00000058389 ENSRNOT00000088585 2 1 1 247 1 236547632 236547650 AATCCTTCCGGGAACACTG 60 236577320 236577338 ATGATGACATGTCCCAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 3 1 1 70 16 82332005 82332023 CTTCATTGTGGACATGGCT 58 82331610 82331971 GAAGACAAGCCTTGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006566.1 ENSRNOG00000057279 ENSRNOT00000088105 2 1 1 80 1 240340844 240340865 AATGGAATTCTCAGATGACCAC 59 240340636 240340804 CCTCAACGTCTATACCTGGT 59 Novel Rattus norvegicus 81 AABR07055992.1 ENSRNOG00000053142 ENSRNOT00000083024 1 1 1 80 7 16785506 16848523 GTTGAGTCTGAACATAACTGCT 59 16785447 16785465 TAGTCACCAGTTGCAGAGC 60 Novel Rattus norvegicus 81 AABR07026576.1 ENSRNOG00000058075 ENSRNOT00000078491 1 1 1 80 16 84212867 84213818 GTCTAGCTGTAACCATCAAGG 58 84213860 84213878 TACTCATTCCTGCAGTGGG 59 Novel Rattus norvegicus 81 AABR07056014.1 ENSRNOG00000053585 ENSRNOT00000081476 2 1 1 80 7 18340163 18341618 GAGAGGTAGGATCTGGTATATCC 59 18340105 18340123 GTTATGGGCTGAAGGAGGT 59 Novel Rattus norvegicus 81 AC117971.1 ENSRNOG00000057391 ENSRNOT00000090247 3 1 1 84 7 19843487 19843508 GTGGGATTCTTCATCATTTGCA 60 19843237 19843258 AGGTTACATTTCCAAGGTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026612.1 ENSRNOG00000056384 ENSRNOT00000084414 1 1 1 75 16 86465686 86465704 CACAGTATCACCCGGAGAC 60 86470323 86470341 CCTCTCAGTGACAGGTTCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026704.1 ENSRNOG00000053217 ENSRNOT00000083978 3 1 1 85 16 90280281 90282431 GGGAGGAAGTTATAATGTACAAGC 59 90280219 90280238 CTGTGTAAACCATGGGTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07039773.1 ENSRNOG00000059472 ENSRNOT00000078766 3 1 1 104 X 84528596 84529280 CTGCTCAAGGATTACATCCA 57 84529345 84529365 TGAAGACTTTGGTCAGATAGG 57 Novel Rattus norvegicus 81 AABR07026924.1 ENSRNOG00000059954 ENSRNOT00000082088 1 1 1 80 17 5016821 5016939 CCCTTATATGGCAACCTACAC 58 5016981 5016999 GGATGTCTTTGGAGGAAGG 58 Novel Rattus norvegicus 81 AABR07056423.1 ENSRNOG00000057870 ENSRNOT00000085739 2 1 1 92 7 24715176 24715194 CTACCAGTCTCTTGGGACC 59 24707470 24707489 CCTTGATACTGGATCACTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056425.1 ENSRNOG00000061877 ENSRNOT00000079296 1 1 1 122 7 25004527 25005161 ATCACAGGCCTCAAGACTG 59 25006359 25006378 AATATTTGGCTTGCCTAGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 2 1 1 72 9 113788532 113800862 CAAGTGCCTCATTCAGGAG 58 113788478 113788496 CATGCACTCCTTACAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068705.1 ENSRNOG00000061831 ENSRNOT00000078863 3 1 1 82 9 115570679 115570698 CAGATGCTCTCCGATATCTC 57 115569635 115570636 GCAGATGTCTGAGAAGATACC 58 Novel Rattus norvegicus 81 AABR07042654.2 ENSRNOG00000060296 ENSRNOT00000077455 3 1 1 80 19 1582277 1582297 AGAGTCTCTGGAAGAGAAGTG 59 1582335 1593657 GTTGCTTTGAAGGTATACCTGAG 60 Novel Rattus norvegicus 81 AC096370.1 ENSRNOG00000055937 ENSRNOT00000089366 1 1 1 103 1 259606776 259608220 GATCCGGAAGAGCTCTTCC 60 259608287 259608305 GTGGTCTCAGACAGCTCTC 60 Novel Rattus norvegicus 81 AABR07027039.1 ENSRNOG00000053981 ENSRNOT00000091714 2 1 1 80 17 11850949 11850968 CCAGTTTGTGTCAAGTTGAC 58 11848082 11850908 CTGACCAATGACTTATTCCGT 58 Novel Rattus norvegicus 81 AABR07068949.1 ENSRNOG00000060886 ENSRNOT00000082853 3 1 1 88 8 3074878 3074896 GCTCACTAGCTTGTTTGGT 58 3074944 3096297 GTCTTCAGGTGAGTTTATACCTG 59 Novel Rattus norvegicus 81 AABR07068997.1 ENSRNOG00000060907 ENSRNOT00000080435 3 1 1 85 8 4785445 4785463 ATTACCAAGCTACCAGGGA 58 4738375 4785399 AAGCTTGGAGGTAATACATCAG 58 Novel Rattus norvegicus 81 AABR07056638.1 ENSRNOG00000057175 ENSRNOT00000079330 3 1 1 102 7 34323206 34323224 CAGTTGATGGGCTCAACTG 59 34321987 34323140 CATTTGCGTTTGCCTTTGC 60 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059,ENSRNOT00000077575 3 2 3 90 8 5173924 5173945 TATTCAGTGAAGCAGACATCGA 60 5171985 5173879 GACTTTATGAAGTCAGGATCAACTG 60 Novel Rattus norvegicus 81 AC103018.1 ENSRNOG00000059594 ENSRNOT00000079070 2 1 1 126 1 264470963 264470982 CCTTGACCTTTGAAGTGCTG 60 264471071 264472376 GAAACAAGCTGAAGGCCTG 60 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 2 1 2 99 19 11671490 11686698 AAGGCTTGACTCCTGTCTC 59 11686759 11686779 CTCGCCTTCAATTTCATTCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 2 2 2 91 17 21293251 21294174 AGAACAATACACCACTTGGG 58 21293179 21293198 GGAGACCTTAGGTATTGGTG 57 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 3 2 2 91 17 21293251 21294175 AAGAACAATACACCACTTGGG 59 21293180 21293200 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07027272.1 ENSRNOG00000051772 ENSRNOT00000089995 2 1 1 90 17 22263052 22263070 CCTTCCTCAGTAAGCCCTG 60 22253639 22263000 ACTTTGACTGACAACAGAAGC 59 Novel Rattus norvegicus 81 AABR07069227.1 ENSRNOG00000051989 ENSRNOT00000081222 3 1 1 83 8 13524584 13525552 GGTGACTATGCTATTTCAGTTCG 60 13524523 13524541 GTCTTTGCACTGGTTACGG 59 Novel Rattus norvegicus 81 AABR07057079.1 ENSRNOG00000053059 ENSRNOT00000085889 1 1 1 131 7 53759563 53759941 TTTCGATCTTGGGCTTTGC 59 53760036 53760054 TAACAAGGGTTCCACAGCA 59 Novel Rattus norvegicus 81 AABR07057116.1 ENSRNOG00000060210 ENSRNOT00000089822 1 1 1 75 7 56242964 56242986 CGACATGTATGCAGTACATAAGG 60 56291791 56291812 CATCCAACTTCGTATTTCTTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 1 2 3 80 8 23495992 23496012 ACAGCATTATTAGCGTGTACC 59 23496052 23509007 GACATTTCCTTTCAACCTTGC 58 Novel Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 3 1 1 61 7 62839118 62839858 TTACTCCAAACAGCCCTCC 59 62839881 62839901 GTACGCACTCATAGAGGTAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043601.4 ENSRNOG00000058833 ENSRNOT00000090322 3 1 1 60 19 30775802 30775823 AAGAGAAACGAGAAGATGTGTC 59 30776731 30776752 GAAGTGATCCTGAAGATAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043711.1 ENSRNOG00000060858 ENSRNOT00000089868 3 1 1 92 19 36256539 36256558 AGATAGTGTGCTTCCTCTCC 59 36242350 36256484 GATGTTGAATGGGCACTGG 59 Novel Rattus norvegicus 81 AABR07028981.1 ENSRNOG00000053206 ENSRNOT00000090214 1 1 1 80 10 1565689 1566475 CTCCATCTCAGAACAGGACC 60 1566518 1566536 ACAGAGAAGGTCAACAGGG 59 Novel Rattus norvegicus 81 AABR07028995.2 ENSRNOG00000057886 ENSRNOT00000083856 1 1 1 86 10 1702570 1702588 GTTTGAGGAACACCCTCAG 58 1701686 1701706 CCCTTCTTTACTGGTATTGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 3 1 1 75 7 82394540 82394558 CGATGCTAAATGCTTCAGC 58 82394597 82411849 GGTTTGGACACAGAGTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040959.1 ENSRNOG00000056071 ENSRNOT00000091436 3 1 1 60 X 115910754 115910772 CAGCTGAGGCTTAGTCTCC 60 115910796 115910814 CTCAAGAACAGGGCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041239.1 ENSRNOG00000054788 ENSRNOT00000083591 3 1 1 90 X 123662355 123662374 GTCTACCTTCTGGGTACCAC 59 123603291 123662302 CAGGAACGCAGAAAGACTG 59 Novel Rattus norvegicus 81 AABR07007691.1 ENSRNOG00000058293 ENSRNOT00000089699 2 1 1 80 2 24345300 24353313 CATGACACAAGAAAGGCTCAC 60 24345240 24345259 CCTCTCGAGTTTCTCACCAG 60 Novel Rattus norvegicus 81 AABR07007717.3 ENSRNOG00000060525 ENSRNOT00000090546 1 1 1 80 2 25535831 25536867 GGCCAGTGGATAGATCTCC 59 25536911 25536929 ATGACGATCGGACTTCCAG 59 Novel Rattus norvegicus 81 AABR07070161.5 ENSRNOG00000059904 ENSRNOT00000082868 3 1 1 91 8 55542907 55543184 TGATCAAGGTGAATGCATGG 59 55542835 55542853 TGCTTCAGATCCACGAGAG 59 Novel Rattus norvegicus 81 AABR07041724.2 ENSRNOG00000061916 ENSRNOT00000080023 3 1 1 80 X 137709504 137719788 ATGAGGCAGGTCTTTAAAGC 58 137709443 137709461 ATTCGACACTGTACTTCGC 58 Novel Rattus norvegicus 81 AABR07029563.1 ENSRNOG00000052371 ENSRNOT00000090220 2 1 1 80 10 34704576 34709702 CATGACGACTTGGACACTG 59 34709745 34709764 AGATTCGATTGTGGTAGCAC 58 Novel Rattus norvegicus 81 AABR07058412.1 ENSRNOG00000054589 ENSRNOT00000082481 1 1 1 132 7 115117501 115117520 CTCTAGGCTCCTATGAACCC 59 115116798 115117406 CTGACCCACAGGAACAGAG 60 Novel Rattus norvegicus 81 AABR07072106.1 ENSRNOG00000060925 ENSRNOT00000089709 3 1 1 89 10 38053608 38053627 TTTAAGGTCAGCCAGGACTC 60 38050169 38053557 GTTCTTGATGGCAAGACCTG 59 Novel Rattus norvegicus 81 AC126640.1 ENSRNOG00000054866 ENSRNOT00000085075 3 1 1 114 10 38535651 38535669 GCTCTTGGCTTTATTTGGG 57 38534986 38535008 TCAGAAGAGACTCATGAGTAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042407.1 ENSRNOG00000058951 ENSRNOT00000077816 1 1 1 62 X 155110178 155110196 GAAAGCAATCTTCTGGCCT 58 155110222 155123445 ACTCATGCTGGACTCTGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07072112.1 ENSRNOG00000057356 ENSRNOT00000087751 1 1 1 81 10 40707733 40710621 ACGAACAGGTATCTTGTGTC 58 40707671 40707689 ACATTCCTGCTTGATTCCC 58 Novel Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000086415 2 1 2 81 2 28841478 28841499 GAGGAATGACAGTGAACAACTC 59 28836931 28841438 TGCAATGAAGTCCTTCAAGAC 59 Novel Rattus norvegicus 81 AABR07058501.1 ENSRNOG00000057757 ENSRNOT00000080245 1 1 1 80 7 119753569 119754513 TCCTCAAAGGGACAACCTG 59 119754556 119754575 GGAACATCTTCATGCCTGAG 59 Novel Rattus norvegicus 81 AABR07058501.1 ENSRNOG00000057757 ENSRNOT00000080245 3 1 1 81 7 119753568 119754512 GTCCTCAAAGGGACAACCT 59 119754556 119754575 GGAACATCTTCATGCCTGAG 59 Novel Rattus norvegicus 81 AABR07070345.1 ENSRNOG00000052283 ENSRNOT00000091522 2 1 1 123 8 66424500 66436758 CTATTTAAGGAGAATGTCTCGTGG 59 66424400 66424418 ATAGTGAGGCTCTAGGGCT 59 Novel Rattus norvegicus 81 AABR07007861.1 ENSRNOG00000057995 ENSRNOT00000090612 2 1 1 93 2 31677188 31677209 TGACCATCTACTCACTCTACAG 59 31677263 31679160 CAGGACAAGGTTTGCACTC 59 Novel Rattus norvegicus 81 AABR07044418.2 ENSRNOG00000060090 ENSRNOT00000084566 2 1 1 82 20 5314713 5314731 TCTTCAGGGATCTCTGGGT 59 5314544 5314562 GTCCTGATTTCCCAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028076.1 ENSRNOG00000058667 ENSRNOT00000087867 2 1 1 92 17 55966249 55966271 TCAGTCTGTGTATCTGTGTAGAG 59 55973725 55973743 ATTATGTCATTGCCAGCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 3 2 2 80 4 108023 108302 GAGGTTTGTGTTAAGGCCTC 59 108345 108363 TTCAGCTCTCCAGTGACTG 59 Novel Rattus norvegicus 81 AABR07070581.1 ENSRNOG00000053544 ENSRNOT00000086040 1 1 1 80 8 75773243 75774596 ATGTTGGAGGAATTCCACTG 58 75774638 75774657 CTTTGTAATCCCTTCCGGAG 58 Novel Rattus norvegicus 81 AABR07070635.1 ENSRNOG00000053862 ENSRNOT00000088767 1 1 1 82 8 78320464 78320482 AGAAGAGGACAGCAGATGC 60 78318842 78320418 TTCAGGATCCAAACCACGA 59 Novel Rattus norvegicus 81 AABR07044635.1 ENSRNOG00000058683 ENSRNOT00000084854 2 1 1 60 20 14046409 14046427 ACTGTCCCAAAGAGGAAGG 59 14045947 14045965 CTTTCTGGCCTTGGTTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028258.1 ENSRNOG00000058781 ENSRNOT00000091239 1 1 1 84 17 62657992 62658010 GTTTAGAACCCAGTCACGA 57 62657536 62657947 CAGAAAGTCATGTTTCGATCTC 58 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 3 1 1 66 8 81635508 81635526 GAAGTGAAGGCTACAGGTG 58 81490685 81635478 GAATGGCCCATAAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723 3 1 2 83 17 62735303 62735321 GTTTAGCTCCCAGTCACGA 59 62734848 62735258 ACAAAGTCACGTTTCCAACTC 59 Novel Rattus norvegicus 81 AABR07044671.1 ENSRNOG00000061116 ENSRNOT00000081523 2 1 1 89 20 16652671 16659940 GAACATCACGGTGAGTCCA 60 16652600 16652618 TCTCCTCTCCCTCCTTCTG 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 3 1 1 66 8 84886688 84893246 AAAGAGCAGCAGACAAGGA 59 84886640 84886659 TCCTTCTCTTCCTCTTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028523.1 ENSRNOG00000060508 ENSRNOT00000091646 3 1 1 80 17 73325756 73332962 TGGATCCAAATATGAGCATGG 58 73325696 73325716 GCAAATTGATCTCTGTCAGTG 58 Novel Rattus norvegicus 81 AABR07044805.1 ENSRNOG00000055873 ENSRNOT00000091093 1 1 1 98 20 21197224 21212263 CTGGAAAGTTTCCAGCTCTC 59 21212324 21212342 TACCTGTTCAAGCTGAACG 58 Novel Rattus norvegicus 81 AABR07028670.1 ENSRNOG00000053497 ENSRNOT00000084757 2 1 1 95 17 80061330 80063859 AGCCCTGATGTTCAGATGAG 60 80063916 80063935 ACCAAAGAGAAGCATCAAGC 59 Novel Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 3 1 1 65 17 86211392 86214344 GAAAGAGTGTTTGAAGGTCTTCC 60 86211349 86211368 CAGGATTTGTGGATCTGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028795.2 ENSRNOG00000061547 ENSRNOT00000091727 3 1 1 82 17 86637738 86640217 GATGGCTGAATTCCTTGACC 59 86637675 86637694 ATAGGACGTGTGAAACCGAG 60 Novel Rattus norvegicus 81 AABR07071228.1 ENSRNOG00000057243 ENSRNOT00000088816 3 1 1 80 8 105667106 105667124 ATGTCGTGGTTGTGATCGT 60 105666795 105667065 CCTCATGATTTGCTATCAGCTG 60 Novel Rattus norvegicus 81 AABR07071294.2 ENSRNOG00000060099 ENSRNOT00000078188 2 1 1 84 8 108093598 108093616 GATTGTTTCTAAGGGCCGA 58 108093663 108096899 ATCAGAGACAGGGAGTAAGG 58 Novel Rattus norvegicus 81 AABR07060055.1 ENSRNOG00000055651 ENSRNOT00000078470 1 1 1 81 4 51738018 51738036 AATGTGGTCGTGGATACGT 59 51738080 51739317 GTCTGTCACCTTCTTGTCAC 59 Novel Rattus norvegicus 81 AABR07071333.1 ENSRNOG00000059817 ENSRNOT00000077590 3 1 1 81 8 109877472 109877491 TTCGTCACATCAACCATCAC 59 109876571 109877429 CTCGGTTATTGTGTCCTCTG 58 Novel Rattus norvegicus 81 AABR07045318.1 ENSRNOG00000051397 ENSRNOT00000082979 3 1 1 64 20 42684376 42687059 CCCGACCTTAGTAAATTTCTGG 59 42684333 42684354 GCCCTCTACTTCTCAAATAGAC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07045400.1 ENSRNOG00000054936 ENSRNOT00000091453 2 1 1 92 20 46316869 46318614 CCTTTGTAAAGGTCAAGCCG 60 46318667 46318687 GGTGCATTAACTCGTCTAGTC 59 Novel Rattus norvegicus 81 AABR07060341.2 ENSRNOG00000060317 ENSRNOT00000081779 1 1 1 80 4 68443805 68443827 CCTTCAAGATAGACATGAACTGG 59 68443862 68444134 CATAGGAATTCTTCTTGTACCCTG 59 Novel Rattus norvegicus 81 AABR07060341.2 ENSRNOG00000060317 ENSRNOT00000081779 2 1 1 80 4 68440688 68440707 CTACACCCGTGAATCAACTG 59 68440744 68442548 GGTTGGGATCATAGATCTTAAACTG 60 Novel Rattus norvegicus 81 AABR07008594.1 ENSRNOG00000058273 ENSRNOT00000080790 2 1 1 83 2 65870808 65870828 CAACACTCAGTGAAATCAGCT 59 65851558 65851581 CCTGATAAGTTATCTGCTTCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 2 1 1 60 Y 2027508 2038688 TGATGTATCCTGTCCTAGATTGAG 59 2038704 2038725 TACACAGGAAATCAGATGATCG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103694568 ENSRNOG00000052946 ENSRNOT00000085333 3 1 1 108 Y 2654321 2654536 CCACTGAAGTTCTCTAGATAACAC 59 2654601 2654621 AGAGTCAAGGCATTATTCCTG 58 Novel Rattus norvegicus 81 AABR07043877.3 ENSRNOG00000056500 ENSRNOT00000088864 2 1 1 88 19 45441918 45460471 CATCTTGAGAAGATACCAATCTTCC 60 45460516 45460535 TCTTGGATGTTGTCCTGGAC 60 Novel Rattus norvegicus 81 AABR07043877.2 ENSRNOG00000054148 ENSRNOT00000083375 3 1 1 87 19 45537562 45537581 GCCAAGTCTTTCCAGTTCTG 59 45537631 45563406 TTCCCATTTGATTTGCCGC 60 Novel Rattus norvegicus 81 AC125982.2 ENSRNOG00000052743 ENSRNOT00000080883 3 1 1 110 7 130472639 130472657 TGGAGGTCAGAGCTTACTG 58 130472730 130473913 GACCGACAGAGCTAAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 3 1 1 62 19 52053601 52061446 ATATTTACAAGCTGCGAGCC 59 52053558 52053576 CTCTTTCACAGCTGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.2 ENSRNOG00000055320 ENSRNOT00000087103 1 1 1 83 19 52058110 52058128 GAAGACAGCTGGTTCTCAC 58 52058174 52059577 TCTTTCTGACCCTTTGTCAG 58 Novel Rattus norvegicus 81 AABR07058711.1 ENSRNOG00000061588 ENSRNOT00000084840 1 1 1 60 7 134419366 134419384 GTGCTATCGAAAGGCAGAG 58 134419637 134419658 ATTAGCCACAAACCTCAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071739.1 ENSRNOG00000051462 ENSRNOT00000086617 1 1 1 80 8 128560279 128560298 GATGACTGGTACATTCCCTG 58 128560341 128561280 CTGTCCATCGTTCTCAACC 58 Novel Rattus norvegicus 81 AABR07071742.2 ENSRNOG00000055201 ENSRNOT00000091761 2 1 1 91 8 128721259 128729933 CATCTGTGGAGAACCTGGA 59 128729985 128730006 GGCGACTAACAAATTGTTTGTC 59 Novel Rattus norvegicus 81 AABR07044036.1 ENSRNOG00000059054 ENSRNOT00000080991 3 1 1 62 19 53395381 53396305 CCATCATTTGAAGAAGATCTGC 58 53395340 53395361 GTAGGTGATTACTCTTCCTCAC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07058758.1 ENSRNOG00000054356 ENSRNOT00000091363 3 1 1 80 7 136462244 136490724 CTAGCACTTAAGGCCATGGA 60 136462183 136462203 ACCAGTGGGATAGTTCTAACC 59 Novel Rattus norvegicus 81 AABR07071765.2 ENSRNOG00000051645 ENSRNOT00000080648 3 1 1 101 8 130243161 130243179 ATATGCAGGTGTCCAGCTG 60 130246378 130246396 GGCCTGAATCCAAAGTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044148.1 ENSRNOG00000061610 ENSRNOT00000083636 3 1 1 88 19 59656399 59660409 CTCCTAAGGACAAGAACTTTCC 59 59660457 59660476 TTCCTTTACCAAAGGTGTCG 58 Novel Rattus norvegicus 81 AABR07058838.1 ENSRNOG00000056773 ENSRNOT00000081717 3 1 1 114 7 138983467 138988986 CCTCTGTCTGATCTTGAATAAGAG 59 138983376 138983397 CACTTTCAACATTCTCTGAAGC 58 Novel Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 1 1 1 60 7 140008679 140010208 CTCCAGTGTTTCTTCCAGG 58 140010232 140010250 TCTGAGAAAGTCTTCTGCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058907.2 ENSRNOG00000059554 ENSRNOT00000082231 1 1 1 60 7 142301438 142301456 ACTAGGAAGCCAGACAGGA 60 142301827 142301845 GAGGCCCTGTTTCAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007088.1 ENSRNOG00000052677 ENSRNOT00000088126 2 1 1 80 1 280347058 280347237 CCCGTAAGAATACTCACCTG 58 280346997 280347017 AGACAGTCTAACAGCAAATGG 58 Novel Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 1 1 1 73 1 281314293 281314681 ATGGAAGTTACCCAGCCAC 60 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010160.2 ENSRNOG00000058063 ENSRNOT00000088347 2 1 1 81 2 127352904 127354852 AATATGCTGCCAGCAACTG 59 127352841 127352860 TTGTATCACCTAGGGTCCTC 58 Novel Rattus norvegicus 81 AABR07010358.1 ENSRNOG00000059009 ENSRNOT00000084228 3 1 1 80 2 133108816 133112209 AGAATTTCCTACAGGTTCAGAG 58 133112250 133112268 GGTCGTAGTCGATTTGGAG 58 Novel Rattus norvegicus 81 AC111231.3 ENSRNOG00000060025 ENSRNOT00000084370 2 1 1 91 2 150217708 150217727 TCTGACTATTTCCGTAGCCC 59 150215282 150217654 AGTCCTTCACAGTGATGGT 58 Novel Rattus norvegicus 81 AC111231.1 ENSRNOG00000052809 ENSRNOT00000083792 3 1 1 63 2 150267186 150267205 GTCCTCAAGAGATACAGCCA 59 150268085 150268109 GGTATGAGTCTTAGAGTTTCAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 1 1 1 60 2 173565576 173565594 GTGTTCTGGTAGCTCAGTC 58 173565618 173568522 TTTGACAGTGCTGTAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011934.1 ENSRNOG00000054050 ENSRNOT00000082323 3 1 1 80 2 176663415 176665595 TCCCTACAGCCATTATTTACC 57 176665637 176665655 GATGCAGGAGAGTGTAGTC 57 Novel Rattus norvegicus 81 AABR07011997.1 ENSRNOG00000052251 ENSRNOT00000089493 2 1 1 105 2 180921251 180921269 CAATATGTGGGAGCCTGGA 59 180929538 180929556 AGTCCAATGCTTAGCTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012061.1 ENSRNOG00000060178 ENSRNOT00000081543 3 1 1 80 2 184597231 184599261 ATTCATCTGCTAGTTGGGC 58 184599305 184599323 CTTGTGAATGCTTGGTTGC 58 Novel Rattus norvegicus 81 AABR07012276.1 ENSRNOG00000061912 ENSRNOT00000085249 2 1 1 81 2 192045653 192045671 TTCAGTGCGTTTGGAATGC 60 192045711 192060823 GCTGAGAATTAAAGACTTCCTTCC 60 Novel Rattus norvegicus 81 AABR07014218.1 ENSRNOG00000057936 ENSRNOT00000086200 1 1 1 77 14 5618440 5618458 ATTTGATGAACCGTCTGGC 59 5650691 5650709 AAGTGCCTTTCCATCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014630.1 ENSRNOG00000052680 ENSRNOT00000085412 1 1 1 80 14 23971333 23971351 TTCCAAGAACGCTCCTCTC 59 23971392 23972892 TGTCATTACCTTCCTCTTCACC 60 Novel Rattus norvegicus 81 AABR07013023.1 ENSRNOG00000052101 ENSRNOT00000081752 2 1 1 97 2 219059811 219059829 GAAGGTTAAGCTGGCTGTG 59 219065141 219065160 GATGCTGTGAATCACTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013073.2 ENSRNOG00000056395 ENSRNOT00000084403 3 1 1 123 2 221510442 221512165 AGTCCAGAGGAAGCAATCTG 60 221512251 221512269 TTTCTCCTTGCTCTCCACC 59 Novel Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 3 2 2 80 2 254033893 254034510 TTGATCAGGAACTGACTACCT 58 254034552 254034570 TACTTAACTCTCGCTTCGC 57 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 2 1 1 68 2 255464419 255466064 ACAGCTCTTGCTTTACAATGTG 60 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA11 ENSRNOG00000052201 ENSRNOT00000087193 2 1 1 62 3 103986623 103986641 CTGAGGAATGGCTCCTCTG 60 103986667 103986685 CCCTCCTCACATCATGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063082.1 ENSRNOG00000031342 ENSRNOT00000050986 3 1 1 60 6 17759745 17759764 CGCCAATCACTTCTTCACTG 60 17759785 17759805 TTGAGGTTCGTAAACACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057328 ENSRNOT00000088144 2 1 1 64 2 28606744 28606762 ACACGGAAGCTTAACATGG 58 28606790 28606808 AAATACGGACTGCCTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059102 ENSRNOT00000082457 2 1 1 60 2 186255457 186255477 GTGCTAACCACTGTGATTTCC 60 186255497 186255517 CCACTACCACAAATTAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051714 ENSRNOT00000087464 1 1 1 60 4 165622038 165622056 CCTCCTGGGTAGTGTATGC 59 165621996 165622015 GTCTCCTAGGTCCCTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058771 ENSRNOT00000087786 2 1 1 60 4 107754707 107754728 ATACAGAGAAGATTAGCATGGC 58 107754668 107754687 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970 3 1 4 81 19 17395975 17395996 CAGCCTCTTTATGAAGAAGCAG 60 17389700 17395936 ATTTGGATCGACCAATTCTCTG 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076937 3 1 3 87 X 65559236 65559255 GAGTGAAGAATACGCTACGC 59 65455501 65559186 CTGTGACCATCCTGTACCC 60 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376 2 1 2 140 4 114818850 114819359 AATCCCATCTGCTTCGAGAG 60 114818588 114818606 TGAGGACAGTCCAAAGCAG 60 Novel Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 2 1 1 62 2 78283229 78283249 TTGATGTGAAATGGCAGTCAC 60 78283134 78283152 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA6 ENSRNOG00000054636 ENSRNOT00000084592 3 1 1 60 14 65281403 65281423 TGAAGCAGCTGATACTTTAGG 58 65281444 65281463 GCTGTGAACTGTTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059528 ENSRNOT00000078613 3 1 1 60 3 165570769 165570789 ACGATACAGAGATTAGCATGG 58 165570729 165570747 GAACACTTCAGGATTTCGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098511.1 ENSRNOG00000054297 ENSRNOT00000089425 3 1 1 82 7 139528694 139528717 GACTTTAGAAAGAAGAGTGTCACC 60 139527064 139528655 AGGTATTGCAAGAGGATCCTG 60 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000072059 2 1 4 82 5 171669377 171669399 AGGAGTCTATGAAGATGAAGAGG 59 171667121 171669335 ATCATTGCGTATGCCTTCG 59 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000076305,ENSRNOT00000055658,ENSRNOT00000083678 2 3 3 80 5 164953618 164954141 CTGGAGAAGAACGATGTGGA 60 164954180 164954202 CTCAAAGACAAACTTCTCCACTG 60 Novel Rattus norvegicus 81 AABR07059925.1 ENSRNOG00000052702 ENSRNOT00000090618 1 1 1 60 4 43915819 43915839 ATGAAAGACGATATCACTGGG 58 43915859 43915879 AGGCTTTCTTGTTGTCATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058788 ENSRNOT00000086895 2 1 1 63 14 86964960 86964979 CAATGAGGTTTATCCGAGGC 59 86964916 86964934 TACTGACTGGATTCTGGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000085761 2 1 3 60 20 3365914 3365932 ATGAGCCCATCTCTTTCCT 58 3365956 3365974 TCAAATCCTACCTGCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061780.1 ENSRNOG00000054430 ENSRNOT00000081511 2 1 1 60 4 143911942 143911962 TGAGTGTCATTAAAGCTGTGG 59 143911984 143912002 GCAGACTTGGTGACTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054769 ENSRNOT00000085664 3 1 1 60 10 89562099 89562117 AGTTGGAATAGGAGCTTGC 58 89562057 89562076 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058851 ENSRNOT00000077549 1 1 1 64 2 101369821 101369840 GGACTGCTGTGTAACATGTG 59 101369865 101369885 GCTGAGTATAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013918.1 ENSRNOG00000051010 ENSRNOT00000073367 3 1 1 62 2 262917884 262917903 ACTTTGTAGACCTGGCTAGC 60 262917928 262917946 AGGACTCAGGAGTCAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002973.1 ENSRNOG00000050148 ENSRNOT00000074615 1 1 1 80 1 90949329 90949350 AACCTTTCTCTGTCTGTCAC 58 90949268 90949287 GTGATGCCCTAAAGAATCCT 57 Novel Rattus norvegicus 81 AC113635.1 ENSRNOG00000051467 ENSRNOT00000086881 3 1 1 68 2 210002117 210002136 GATAACAGAAGAGCATCGCT 58 210002068 210002092 CTGCTCTTCTGTTATCATACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627 3 1 2 80 1 254567149 254568216 TGGACAAGAAGAGTTAAGGGA 59 254571388 254571409 TCAGTATTGGTACTTGAGGGAG 59 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258 3 1 2 80 13 95986508 95988009 TCAACATCAACGACATGCA 58 95988050 95988071 CTGTGTAATACCACAAGAAGCA 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 3 2 4 101 9 88282556 88282576 ATGTAATGTAACCTACCCGGG 59 88280156 88280174 CATCTCATACCAGGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 2 1 1 65 8 45701592 45701613 ACAGGAATAAGTCAGAAGTCCT 59 45701546 45701564 TACGGCCATGAAGATAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 2 1 1 64 7 108551232 108551250 ATTGCCTGGAGAGTTACCC 59 108551185 108551203 TTTGAATTGGTGCTGGACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 3 1 1 64 7 108551453 108551471 ATTTCAAGAGGCTGTCCAG 57 108551286 108551304 TTCAACAGACCCTGACCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 2 1 1 104 3 145831630 145831648 AAGGAGGACTTCCATTTGC 58 145831717 145831735 TTCACAGACCATCATCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051845 ENSRNOT00000078076 1 1 1 60 19 10729493 10729512 ATTCTGCTACTAGACCCTCC 58 10729535 10729553 CTCTATGTCCAGCAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.1 ENSRNOG00000051012 ENSRNOT00000075395 3 1 1 60 3 150414595 150414613 GACTCCTAACAGCAGGAGC 60 150414553 150414572 GAAAGGATCCTAAAGGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034781 ENSRNOT00000052904 2 1 1 60 X 83783957 83783977 ACACTGATCTCGTCTGATCTC 59 83783998 83784017 CCATCCAAGTACTAACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056973 ENSRNOT00000078426 2 1 1 60 3 4094164 4094184 GTCACATTTGTGTCAGTAGGT 58 4094124 4094142 CAGAACACTGAGCGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052258 ENSRNOT00000082069 3 1 1 60 13 31370615 31370637 GATACAGAGAAGATTAGCATGGC 59 31370657 31370675 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 1 1 1 64 13 52266821 52266839 AGATGATGCTGGAAGGAGG 59 52266774 52266792 AGAAGGCAAGATCTGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076871 3 1 2 80 X 74334963 74337599 TTAGAGTACAGGGTGAATCTGG 59 74334904 74334926 CACTCTTCACTCCTCTAAATCCA 60 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 2 3 4 104 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873734 134878984 TCAAGCTGGGTGTAAATGC 59 Novel Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 3 1 1 64 1 214009831 214009849 CAAGGAACTCAGGACACTG 58 214009783 214009801 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 1 1 1 60 2 35185897 35185915 CCCTCTTCCTTCTGTTCCT 58 35185942 35185960 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 3 1 1 84 14 31058214 31058235 CTTCAGAATTTCAAGAAGTCCG 58 31003004 31003025 AAGCACAACATGTAGCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 2 1 1 81 18 7118597 7118615 TCGAAGACAACACTGGGTC 60 7118826 7118844 TCTCCTGATCGCGAATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 1 1 1 60 6 2660915 2660933 TCTTCACTCCTGCAATGAG 57 2660298 2660319 CTGCAAGATTTCTCACATTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 2 1 1 60 10 79210663 79210681 TGTTTGGACTCCCAAGGAC 60 79208793 79208811 CAGGAACTACAGCTGAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 1 1 1 71 1 21438018 21438036 CCATACTTCGTTCCTTGCA 58 21465637 21465655 AATGCATAGATGAACCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 1 1 1 67 4 161342592 161342611 AAAGTTGTTTGACCAAGCAC 58 161387708 161387726 AATACTGCTCTGAGCCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 1 1 1 106 4 170077450 170077468 AGAAAGTACTCGGGAACCC 59 170075639 170075660 CCCATGTTGACAGTTTATATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 3 1 1 62 15 30870083 30870102 AGAAGCCTGGAAACTCAGAG 60 30868130 30868148 GAGCCTCTTGAGGACACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 2 1 1 63 6 32307983 32308007 CTCCTGGAAGTGAATTCTATTTACG 60 32307330 32307349 AAACAGCAGTGTAAGACCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 3 1 1 62 6 36731272 36731290 CGCTATGATCCTTCACCTC 58 36729829 36729847 CTAGGGCCTGGAATTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 1 1 1 61 15 72057971 72057991 AGTCAGTTATATCAGCCAGTC 57 72078643 72078662 ATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 2 1 1 62 15 72057970 72057991 AAGTCAGTTATATCAGCCAGTC 58 72078643 72078662 ATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 2 1 1 78 6 97335375 97335393 TGGTGCTTTCAGGAGAAGG 60 97427434 97427454 TCCTTTCTCCTCTGTAGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 1 1 1 60 1 97133650 97133668 GAAGGCTTGGGAGTATGTG 58 97134917 97134936 TGATCTTGGGATATGCACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 3 1 1 77 13 41853474 41853495 CAGAGTGGAGACTAATGTTCAG 58 41860736 41860754 TTACTCCAAGTGAAGGCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 2 1 1 60 3 33949971 33949989 CACCTGATGCTCAAGAGTC 58 33946845 33946865 ATGATTAGTTGTCACCACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 1 1 1 60 6 117418997 117419017 CTTATTGTCTTGTGTAGCCAC 57 117418160 117418178 CAGTCTTCCCACTTTCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 3 1 1 61 11 37599354 37599372 TCCTTGTTCCAGAGCTTCG 60 37475219 37475238 ACAAAGTAGAGGCTGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 1 1 1 60 3 71109802 71109822 ATACATCCACCTCAGTTTCCT 59 71108009 71108027 CCGTGGTCTTCAGTAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 3 2 2 84 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228240 74228468 CTTTAGCTTGTTGCACTCG 57 Novel Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 1 1 1 109 12 13450394 13450412 CTGTTTCTGCTGCTTCCTG 59 13450817 13450835 ATGCCTCTGTCTCCTTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 2 1 1 61 1 147435595 147435613 CAGGAACTACCTCATCCCG 59 147424536 147424554 CATGCAGCACTGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 1 2 3 67 12 22360251 22360269 CAGAATTGAGTGTGGCTGC 60 22360716 22360734 TAGGAATCCAGGTCTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 1 1 1 60 16 29993385 29993405 TCTGGGATGCTTTCAATACTG 58 29983978 29983998 CTTAACTCCTTTCTCCAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 2 1 1 66 12 28025307 28025325 CCCTGTGTTCAGAGATGGG 60 28024965 28024984 AAGATTTAGAAGGACTGCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 3 1 1 60 12 33687319 33687340 CCTTTCTAAATTCAAGGCACAC 58 33686610 33686629 GGTGATCAATCACTGGACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 3 1 1 89 16 58493619 58493638 ACATGGAGCAGAGATATGGT 58 58494306 58494326 CCAGCTTTCTTAGATGATTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 2 1 1 60 12 49034078 49034096 AAGCCAAGAAGGAGAAGCA 59 49034970 49034988 TGAATTCGAAGCTGAGCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 1 1 1 60 13 108021463 108021482 GCATGGTATACAGTTCCCTC 58 108032596 108032617 GACATATTCACATAATCCTGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 1 1 1 60 9 86775908 86775926 CACAGAGACCATGCTTAGC 58 86781383 86781402 TTCCTTGGGAGTATCTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 2 1 1 60 9 86775908 86775926 CACAGAGACCATGCTTAGC 58 86781382 86781402 TTCCTTGGGAGTATCTCTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000087267 2 1 2 89 X 35972464 35972482 CGGAAATGGACAGTATCGG 58 35971858 35972411 CAAATGACACCTGGTCCTG 59 Novel Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 3 1 1 73 16 82332004 82332023 CTTCATTGTGGACATGGCTG 60 82331607 82331625 CACGAAGACAAGCCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922 1 1 2 85 16 87443350 87443368 CATTGATCCCACACCTGAG 58 87470826 87501485 CTAATAATGACCTCTTCCTGCA 58 Novel Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 3 1 1 61 9 106784500 106784518 ATTATGGCCACACTTTCCG 58 106734725 106734743 TCTCAATTCACCACCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000087743 2 1 3 84 8 23492939 23492958 TTCGAACACAAGACCAAGAG 58 23493509 23495988 ATTTAATGTCTTGCTCTGGAGG 59 Novel Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 3 1 1 60 1 273969825 273969843 GATTTCAGGGACACTAGGC 58 273968415 273968433 GGTGACTGCTAATGCAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 3 2 2 80 7 75853238 75853944 AAAGATTCTGACAGGAATGAGC 59 75853982 75854003 AACATACGGTTTCCACATTGAC 60 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 3 2 2 82 10 109508 110531 GGTCAGAATTCAGGTTGGC 59 110577 110595 TCTGGGACACGGTAAACTC 59 Novel Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 2 1 1 74 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82411833 82411852 CATGGTTTGGACACAGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 3 1 1 69 10 11306707 11306725 GAGAGCAGCCATGAAACAG 59 11308050 11308069 AGATTTCAGGAAGGAGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 1 1 1 77 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56879335 56879354 GTGATCAAAGGTGAGAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 3 1 1 60 4 5628101 5628120 ATTATGGGATGTGCTGAGGA 59 5627169 5627190 CTGATGTCCTATGACTTTAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 2 1 1 82 20 14912432 14912451 TGTTCTGAGATCCAAGAAGC 58 14912235 14912253 TCTTGACACGGTAGCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 3 1 1 62 20 23359530 23359548 TTTCAACCAACACCTGTCC 58 23351284 23351302 TCTGGTCTTTGCTACACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 2 1 1 79 2 68819543 68819562 ATTTGGAACCTACCTCAGGG 59 68820157 68820180 CCCTGGAGTTTAATCTTACTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 1 1 1 171 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659571 144659591 GCCATTTGTGGAAGTATACGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 1 1 1 105 2 126934588 126934609 GCTGATGAACGATGGAATACAC 60 126933492 126933511 CACTGTTCTTCTCTTCCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 3 1 1 79 2 149090436 149090456 GAGTTCTGCAGTTTGGATGTC 60 149096543 149096562 CCAAATGACAGTGTCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 1 1 1 69 2 155301990 155302009 TGTTGGTTGTAGCTTCAGTC 58 155303723 155303741 AAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 2 1 1 73 2 173565610 173565629 TTACCAAACTGCTACAGCAC 59 173568550 173568569 AAGTGTACAAGGTTACAGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 1 1 1 60 14 3993497 3993518 TTTACTGATGGTTCCCAATGTG 59 3983281 3983299 GCAACTGAGAAGCATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-atp6 ENSRNOG00000031979 ENSRNOT00000046108 2 1 1 60 MT 8397 8418 TAACAGCAAACATTACAGCAGG 60 8439 8457 ACTAGAGTAGCTCCTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Impa1 ENSRNOG00000010482 ENSRNOT00000014274 2 1 1 80 2 93683674 93683692 GTATACGGGCAGGAAAGGA 59 93683733 93685269 GATTTGGTAATGTCTTCCTGCT 59 NA Rattus norvegicus 81 Elovl7 ENSRNOG00000010450 ENSRNOT00000014074 2 1 1 80 2 40377563 40382727 TCAAATTTGCTGCAGGTGG 59 40377501 40377525 CATAGTAGAAATACATGACCACGTG 60 NA Rattus norvegicus 81 Mir30c-1 ENSRNOG00000035567 ENSRNOT00000053690 2 1 1 60 5 139699930 139699951 TGTGTAAACATCCTACACTCTC 58 139699891 139699910 AGTAAACAACCCTCTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013086.1 ENSRNOG00000023365 ENSRNOT00000036228 2 1 1 104 2 222793373 222793391 CATCCTGGGCTACACTGAG 60 222793456 222793505 TTGTCATACTTGAGAGCAATGC 59 NA Rattus norvegicus 81 LOC680353 ENSRNOG00000033484 ENSRNOT00000048963 1 1 1 60 X 74824555 74824573 CGGAAGGATGCCAAATCTG 59 74824593 74824615 GGACCTTGAACTTCACATTATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 3 2 2 82 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856016 150856034 AGCAGGATGAGCAAATCGA 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027931 2 1 3 80 15 34862922 34862940 TTAAAGGACAGCTGTGGTG 58 34862983 34863499 TGTGATTTCTCTTCCTCTGC 58 NA Rattus norvegicus 81 RGD1560334 ENSRNOG00000003860 ENSRNOT00000005120 2 1 1 60 X 43831895 43831913 CCTCCCAAGAAGGATGCTC 60 43831937 43831955 CAGCACGCTTAGAGATGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000047898 ENSRNOT00000044268 3 1 1 66 2 198381950 198381968 AAGAAGACCCGCATCATCC 60 198381902 198381921 GCTTGTTGAGTTCTTCGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 3 2 2 110 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757595 33757614 GAACTGTCTGCTTCTAGCAG 58 NA Rattus norvegicus 81 AABR07018028.1 ENSRNOG00000031618 ENSRNOT00000028062 2 1 1 104 15 36417782 36417802 ATCATGGATGAGAATTCTGGG 58 36417328 36417718 AGTGACAATTATCTTGCTCCC 58 NA Rattus norvegicus 81 LOC100365012 ENSRNOG00000049037 ENSRNOT00000052052 1 1 1 60 20 1165474 1165493 TGTCCACATATTCTCCACGG 60 1165514 1165534 GAAGACCTTAGACCTGCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf17 ENSRNOG00000019479 ENSRNOT00000026344 2 1 1 84 5 136605455 136609999 CAGTCTCCCATGGATAACGA 59 136605390 136605408 CTGGTGGCTGATGAAATCC 59 NA Rattus norvegicus 81 LOC171573 ENSRNOG00000008563 ENSRNOT00000011381 2 1 1 81 8 41444922 41444940 AGAAAGGAAACTCCACCTG 57 41444424 41444880 AAGAGGATATCAACACCTTGAG 58 NA Rattus norvegicus 81 Ggnbp1 ENSRNOG00000000486 ENSRNOT00000000577 1 1 1 80 20 5620419 5621882 AATTGACTTTGGAGACCTCAG 58 5621924 5621942 TGTTTGTACAAGCCAAGGA 57 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174,ENSRNOT00000084455 2 3 3 86 2 187848283 187848491 TTACAGTGAGGAACTGCGT 59 187848215 187848233 CTCTCAAACTCTCGCTGCT 60 NA Rattus norvegicus 81 AABR07037166.1 ENSRNOG00000059740 ENSRNOT00000087609 1 1 1 60 X 14783513 14783532 TCTACTTTGACCGTGATGAC 57 14783472 14783491 GACTTGCTCAAGAAGAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam132a ENSRNOG00000019864 ENSRNOT00000027055 3 1 1 98 5 173393733 173394230 GATTCCAGGCTCCTACTACC 59 173394291 173394309 ACTGGAAGATGGCAGAGAC 59 NA Rattus norvegicus 81 Hspa8 ENSRNOG00000032585 ENSRNOT00000041306 2 1 1 60 5 99032301 99032320 GGTCAACCATTTCATTGCTG 58 99032260 99032279 CTTGTTCTCACTGATGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910402 ENSRNOG00000060027 ENSRNOT00000083497 3 1 1 60 2 35416777 35416797 ACCCATGTACTTCTTCCTCAG 59 35416737 35416757 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1539 ENSRNOG00000047514 ENSRNOT00000040089 3 1 1 60 11 43310125 43310143 TATGTGGCCATATGCAACC 58 43310166 43310185 GCATACAGAGGCTATTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou2f3 ENSRNOG00000009118 ENSRNOT00000012170 2 1 1 80 8 47424902 47427630 AATGATGCAGAGTCCTCCC 59 47424840 47424858 CCTGCCAAATACTTCGCTG 59 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 1 2 2 80 5 137258429 137258616 ATTGATGAAGTGTGCAGATCC 59 137258653 137258676 GTCAGAAGGATGGATGTTATTAGC 60 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 2 2 2 80 5 137259403 137259500 ATAAAGATTGCTCCAGGAGG 57 137259541 137259561 GTAGTAGAGGTACATGACGAC 57 NA Rattus norvegicus 81 Adrbk1 ENSRNOG00000018985 ENSRNOT00000025847 3 1 1 80 1 219539929 219539947 TACGCAGCTGAGATCATCC 59 219539626 219539885 AATGTTGGCTGGCTTTAGG 58 NA Rattus norvegicus 81 Brpf3 ENSRNOG00000028641 ENSRNOT00000042143 1 1 1 80 20 6065771 6068306 GGACCGAGATGATTCACAG 58 6068350 6068368 GATTCCTGCTCTGACAAGG 58 NA Rattus norvegicus 81 Mirlet7c-1 ENSRNOG00000035500 ENSRNOT00000053623 2 1 1 60 11 16052886 16052908 GTTGAGGTAGTAGGTTGTATGGT 60 16052925 16052946 AGAAGGTTGTACAGTTAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc24 ENSRNOG00000019825 ENSRNOT00000026832 3 1 1 116 1 220137477 220137495 TATCAGCTGCTCAATCTGC 58 220137575 220138697 CTGGTAACAGTAAGCCCAG 58 NA Rattus norvegicus 81 Olr74 ENSRNOG00000015689 ENSRNOT00000021006 2 1 1 60 1 168197419 168197438 GCTCAAGTTGGTATGTGCTG 60 168197461 168197479 GAAAGCCACAAAGAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irs2 ENSRNOG00000023509 ENSRNOT00000032918 1 1 1 186 16 83828316 83828334 GGAGACAAGAACTCCTGGG 59 83828482 83846256 CACTTTACTCTTTCACCACGG 59 NA InUTR Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 2 2 2 80 5 14611273 14611995 ATGAAGGACATAGTTTCAGGC 58 14612034 14612055 CAACTCGACCTAAATCAATGAG 57 NA Rattus norvegicus 81 RGD1565566 ENSRNOG00000042547 ENSRNOT00000068694 2 1 1 60 1 61553597 61553617 AGAAGATGAAGAAGTCATCCG 58 61553639 61553657 GGTGACTTCTCAAACACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910174 ENSRNOG00000048934 ENSRNOT00000043157 1 1 1 60 1 22364827 22364845 CACTCTCCTGCCAATTTCC 59 22364869 22364887 AGATGCCCACCAAGAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp1 ENSRNOG00000000507 ENSRNOT00000066897 2 1 1 80 20 7935295 7935390 TGTGGTCTATGAAACCAACG 58 7935234 7935252 TTGTCCGAGTTCATTCCAG 58 NA Rattus norvegicus 81 Alg5 ENSRNOG00000058694 ENSRNOT00000088575 1 1 1 80 2 143943132 143943151 CGGATTCAAACTACTGACCC 58 143943193 143945070 TCTACATCAAATGCCCATCG 58 NA Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000077246 3 1 2 98 1 201968899 201981137 GCAGTTGTCAGGAGATATAACAG 59 201968823 201968841 TTGACGAAGTCCAAAGGCT 60 NA InUTR Rattus norvegicus 81 Sf3a1 ENSRNOG00000005218 ENSRNOT00000008355 3 1 1 80 14 84403059 84403080 CAAAGGCTTATTTGCAAAGCTC 59 84403117 84404806 CATTCTACTCGGTAACAAACCTG 60 NA Rattus norvegicus 81 Rn60_2_0072.1 ENSRNOG00000050870 ENSRNOT00000074476 2 1 1 60 2 7230391 7230410 TAACAGTGCGGAACTGAGAG 60 7230350 7230368 AAATGACTGCTCCATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gde1 ENSRNOG00000050445 ENSRNOT00000073233 2 1 1 80 1 188398196 188401574 AGACTCAGAAATGAGTTCCCTG 60 188398137 188398155 GGTGAGGTTATGGCAGAGG 60 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777,ENSRNOT00000086721 2 2 2 80 X 29618573 29618592 CCACAAGTGCAGTGAAAGAG 60 29613981 29618531 GGAACACGAACATTCCACTG 60 NA Rattus norvegicus 81 Mir1912 ENSRNOG00000046748 ENSRNOT00000071202 3 1 1 61 X 118130663 118130681 GGATGTGCTCATTGCATGG 60 118130705 118130724 TTCTCACTGCATGTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth2 ENSRNOG00000021051 ENSRNOT00000028588 3 1 1 81 1 101797001 101797109 TGAGTACACTACGGACAAGG 59 101796939 101796957 CTTCCGAGGATCATCCACC 60 NA Rattus norvegicus 81 LOC100911047 ENSRNOG00000047630 ENSRNOT00000074398 3 1 1 80 1 147004851 147004869 ACAAAGAAGTCCCTGTTGC 58 147004913 147006820 GATCTTGTAGGCACCTGTC 58 NA Rattus norvegicus 81 Rn60_X_0594.6 ENSRNOG00000051313 ENSRNOT00000076102 1 1 1 80 X 58583429 58583450 CATGGCATTATAGCCAAGTGAG 60 58583228 58583390 GGCTCAAGTGCTGAATATCTC 59 NA Rattus norvegicus 81 Nkx2-3 ENSRNOG00000016656 ENSRNOT00000054714 3 1 1 62 1 263367575 263367593 CAAGGAGCAAGAAGAGGAG 58 263369101 263369119 GACTTCTTCAACTGGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0594.4 ENSRNOG00000051297 ENSRNOT00000076037 1 1 1 60 X 58556719 58556740 AGAGCACACCTTGAAATATCAG 59 58556758 58556779 ACCTTGCAAATCAGAAGTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Capsl ENSRNOG00000054277 ENSRNOT00000089609 2 1 1 80 2 58744581 58747564 ATGATAAAGATGGGTTGGTGAC 59 58747602 58747623 ACACATCTGTATCAATGGATGC 59 NA Rattus norvegicus 81 Olr1137 ENSRNOG00000047576 ENSRNOT00000072311 1 1 1 60 8 19154809 19154829 GAACTGAGAAACCAAACAACC 58 19154769 19154788 CAGGATCACTTGTCAATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb6b ENSRNOG00000016420 ENSRNOT00000059921 2 1 1 80 17 32774929 32774948 CAAAGGGAACTGGAAGAAGC 59 32771561 32774888 GGTTTCTCCTCATTCTTGGTG 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000057734,ENSRNOT00000082549,ENSRNOT00000068553 1 4 6 80 17 84168236 84168254 TACAGCTTTGAGCGTAACG 58 84167029 84168193 TCCTGAGTGTATTTCACCGA 59 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728,ENSRNOT00000090097 1 2 2 80 13 26801749 26801934 TGTCATAAAGCAGGCACAG 58 26801687 26801707 AACTTTCCTGACTTAGAGGTG 57 NA Rattus norvegicus 81 Olr348 ENSRNOG00000058503 ENSRNOT00000085941 2 1 1 60 1 229890223 229890245 CCTGAATGCTTCCATCTATACTG 59 229890262 229890283 CACATTGGATTCACAGAAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtfp1 ENSRNOG00000004640 ENSRNOT00000006160 2 1 1 81 14 84332539 84332557 TGAATGTCCGCAAATGGAC 59 84331015 84332494 TCTACCGACCTGTCAATGG 59 NA Rattus norvegicus 81 LOC103692171 ENSRNOG00000054176 ENSRNOT00000083560 1 1 1 80 4 114815389 114815553 GCATGGCAGCTACAATGTC 60 114815595 114815615 CTGTTTAGGTGGCTCTTTACC 59 NA Rattus norvegicus 81 Sox14 ENSRNOG00000022084 ENSRNOT00000034277 3 1 1 63 8 108109297 108109315 AGATCAGCAAACGCCTAGG 60 108109252 108109270 ATGTAAGGCCGCTTCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 2 3 3 80 9 8164431 8164449 ACCATCATCAATGTCCTGC 58 8164491 8183089 CTTATACTCCATTCGCACCTG 59 NA Rattus norvegicus 81 Dmpk ENSRNOG00000015085 ENSRNOT00000020428 2 1 1 80 1 79992732 79992750 TGTTCTATGGGCAGACACC 59 79992793 79993049 ACAAGTGTTCCCTGTAATGC 59 NA Rattus norvegicus 81 Kcna7 ENSRNOG00000020779 ENSRNOT00000028189 2 1 1 176 1 101398795 101398813 GTCATCCTGGTCTCCATCG 60 101400854 101400872 GAATGGATCGTTGAAGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 2 1 2 66 X 58181491 58181510 CAACATTCAGGCACTAATGG 57 58112915 58181283 AAGGATAACTGATGCATTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Bnip3l ENSRNOG00000009820 ENSRNOT00000014798 2 1 1 80 15 43647853 43647871 CTGCAGAGTTCCTGAAGGT 59 43646468 43647810 TTCCGATATAGATGCCCAGC 60 NA Rattus norvegicus 81 Zmat2 ENSRNOG00000016016 ENSRNOT00000021516 1 1 1 80 18 29642309 29642328 TACTGCAATGTCTGTGACTG 58 29642369 29642798 GTTTCGCTGATGTTTCTTTCC 59 NA Rattus norvegicus 81 AABR07070032.1 ENSRNOG00000034066 ENSRNOT00000044608 3 1 1 80 8 44992729 44993001 ATAAGAACCAGACTGCGGA 58 44993045 44993063 TGGTGATGATAGGGTTGCA 59 NA Rattus norvegicus 81 Mapre3 ENSRNOG00000008961 ENSRNOT00000011874 1 1 1 80 6 26889696 26889829 TGTTTCGAAACAGGTCTCAC 59 26882914 26882935 CAGAAGTGGAGTACACATTGAC 59 NA InUTR Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 1 2 2 81 18 28864784 28871684 AACGGCAGAAAGAACTCAC 58 28864721 28864739 TGTTCTCAGCCTCACAGAC 59 NA Rattus norvegicus 81 Vbp1 ENSRNOG00000050401 ENSRNOT00000072973 2 1 1 65 1 148428373 148428391 CAAGTTCATGGAGCTCAGC 59 148427980 148427998 TTGATCTCAGGGATCTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Ctsm ENSRNOG00000030276 ENSRNOT00000045830 3 1 1 82 17 3824594 3825639 GATTCTTAAGAACAGCATGGGA 59 3825682 3825700 TTCCACAGTGGTTACCCTG 59 NA Rattus norvegicus 81 Zswim5 ENSRNOG00000018160 ENSRNOT00000068267 3 1 1 80 5 135841010 135841028 CATTGGCTGCCTGTTTCTC 60 135841069 135844554 TCATTCACATCTGACATCTCCA 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 1 2 2 80 6 26356247 26357947 CATGTTGCAGAGGTTCTCTG 59 26356186 26356204 AGTGGTTGAGGAAAGTGGA 59 NA Rattus norvegicus 81 AABR07064622.1 ENSRNOG00000047877 ENSRNOT00000071999 1 1 1 60 6 87426749 87426770 CTTCACCAACAGAATACAAGAG 57 87426710 87426731 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dscam ENSRNOG00000027992 ENSRNOT00000002215 3 1 1 80 11 37053092 37053110 CTTTGTGCTTCTGCTGGTG 60 37041731 37053051 TCAGCTAAACTCTTTGCATCTC 59 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 2 2 2 80 1 243386254 243386916 ACCGGTCTCTATGTATGTCC 58 243386956 243386977 GTTCGAATCTTTATTCCCATCG 58 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735,ENSRNOT00000084214 2 2 2 80 12 52014436 52015619 AGTTCTGGAAGGAAACCGA 59 52015663 52015681 ATAATTCAGCCTCATGGCG 58 NA Rattus norvegicus 81 Guca2b ENSRNOG00000008979 ENSRNOT00000012062 2 1 1 80 5 138696602 138697542 GTCTACATCAAGTACCATGGC 59 138696542 138696561 GGACATCTGCTTCTCTTCCA 60 NA Rattus norvegicus 81 Itln1 ENSRNOG00000004678 ENSRNOT00000006196 2 1 1 80 13 89923039 89923626 CCTCTACCAGAAGTACCCG 59 89923669 89923688 TCATAGACCACAGGTAACGC 60 NA Rattus norvegicus 81 Adamtsl3 ENSRNOG00000010840 ENSRNOT00000032106 2 1 1 80 1 144495567 144495586 AGGCATCGTCTCATAAGTCC 59 144495629 144510689 TGACAGAACACTTCGACCA 59 NA Rattus norvegicus 81 Tdrd6 ENSRNOG00000025693 ENSRNOT00000038239 2 1 1 81 9 19927570 19927588 GAGGAGACAGTAAGCCCTG 59 19927633 19930963 CTGTTTGGAATGCAGCCTC 60 NA Rattus norvegicus 81 Wdr46 ENSRNOG00000031171 ENSRNOT00000000552 1 1 1 80 20 5453145 5454481 CTCTCGAACTGGGAGACAC 60 5453083 5453102 ATGAGCTTCTTTGTCACCCA 60 NA Rattus norvegicus 81 Atp4a ENSRNOG00000020985 ENSRNOT00000028508 2 1 1 80 1 89163653 89165133 ATGACAATTTGTACCTGGCG 59 89165174 89165194 TCTTGAACTCCTGGTAGTAGC 59 NA Rattus norvegicus 81 Dzip3 ENSRNOG00000001956 ENSRNOT00000002678 1 1 1 80 11 54463829 54463848 AGGCTGCTGTAGATAGTTGG 59 54463888 54465260 GTTCATTGTACTGTGTCCTGAG 59 NA Rattus norvegicus 81 Dzip3 ENSRNOG00000001956 ENSRNOT00000002678 2 1 1 80 11 54463830 54463848 GGCTGCTGTAGATAGTTGG 58 54463890 54465261 TGTTCATTGTACTGTGTCCTG 58 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 1 2 2 81 14 7029552 7029573 AGATTTAACTTGTACCCACCAC 58 7029615 7030604 AAGGAATCGGGATCAGAGG 59 NA Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 3 2 2 80 4 34262202 34263116 GCTAAGTTGGTTCAGGGAC 58 34263158 34263178 TTTCCTGTTGTATCCAACTGC 59 NA Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 1 1 1 60 4 172125710 172125729 TCTTGCCAAGATGATGTTCC 58 172125752 172128412 AACCTTGTTGGTTAGCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Vwc2 ENSRNOG00000049076 ENSRNOT00000071558 2 1 1 120 14 91204122 91227377 GAGGAGTTCGTGGTGTCTC 60 91227460 91227479 ACTGATCAGGCTCATACACG 60 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 2 2 3 65 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569122 2593682 TTGCGAATCCTAAGGAGGTC 60 NA DesignRelaxed Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 3 2 3 66 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569123 2593683 TTTGCGAATCCTAAGGAGGT 59 NA DesignRelaxed Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000091063 2 1 3 82 6 2584740 2593685 GTATAACAAGGATTCGCAAAGC 59 2593728 2593746 CTCTTTCACAACCACCTCG 59 NA Rattus norvegicus 81 Grik5 ENSRNOG00000020310 ENSRNOT00000027578 1 1 1 86 1 81891525 81891810 TCTTTCAGAACTCACGGTACC 60 81891459 81891477 CTGTGCTCTTGACGAACAC 59 NA Rattus norvegicus 81 LOC100911721 ENSRNOG00000050201 ENSRNOT00000071891 2 1 1 80 1 220310761 220310779 CTACCTGACCAAGAAGCCT 59 220310822 220311642 CCATTCTTCTCATCAGCTCC 58 NA Rattus norvegicus 81 rno-mir-679 ENSRNOG00000036492 ENSRNOT00000054600 2 1 1 60 6 133864605 133864623 TGTGAGGTGACTCTTGGTG 59 133864644 133864665 TTATGGCTACTGTGAGGAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578,ENSRNOT00000087578 3 3 5 157 7 115767352 115767370 GGAGAAGCTGGAGACACTG 60 115775909 115775927 CACAAGGACCACAGTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem150c ENSRNOG00000002258 ENSRNOT00000003076 2 1 1 81 14 11158091 11158109 AATATCAGCGGTTTGGTGG 58 11158152 11160651 CTTCATCATTTGTGAGCTGGA 59 NA Rattus norvegicus 81 Ucp2 ENSRNOG00000017854 ENSRNOT00000024156 2 1 1 81 1 165511213 165511306 CTCTGGAAAGGGACCTCTC 59 165511348 165511369 CTTTGATGAGGTCATAGGTCAC 59 NA Rattus norvegicus 81 Cecr2 ENSRNOG00000011566 ENSRNOT00000015499 1 1 1 80 4 153306834 153306854 AGCAAGAGCAGATGTTAAAGG 59 153306895 153308767 TCCTCTTAGCTCGATCTTCC 58 NA Rattus norvegicus 81 Atg3 ENSRNOG00000002094 ENSRNOT00000002906 3 1 1 80 11 60601522 60601545 GGCTATCATTGAAGAAGATGATGG 60 60597670 60601489 GCTTCAGTAATTCCTGTAATACCTG 60 NA Rattus norvegicus 81 Rn60_X_0616.4 ENSRNOG00000051236 ENSRNOT00000076945 3 1 1 61 X 60969919 60969939 CTGTTGGTGCTATAATTGCTG 58 60969961 60969980 TTCTTCAGTGGTTGTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362774 ENSRNOG00000042486 ENSRNOT00000050818 1 1 1 121 3 146035891 146035935 TTACTTAGGGTACAGTGCACAG 60 146035791 146035815 GGGCTCTATTGTCATTAATCTTCTC 60 NA Rattus norvegicus 81 Magee2 ENSRNOG00000021400 ENSRNOT00000037575 2 1 1 60 X 75793558 75793577 GGGTCTTTGGGTTGAATCTG 59 75793595 75793618 CTGATTAGATTGTAAGTGTCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0926.1 ENSRNOG00000051305 ENSRNOT00000075407 1 1 1 60 6 82982563 82982581 AAACCAAGAACCTCAGCCT 59 82982603 82982623 TCCTTCTGGTAAATTCGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp1 ENSRNOG00000015121 ENSRNOT00000049285 2 1 1 80 19 21262782 21262800 GTTCCTGATGACCCTCTGG 60 21262841 21264477 CTGCATGTCTCTAAGAAAGACC 59 NA Rattus norvegicus 81 Kcnj2 ENSRNOG00000004720 ENSRNOT00000006254 2 1 1 60 10 99437734 99437754 AAGAGTAAAGTCCATACCCGA 58 99437776 99437794 AATGCCCGTCTTTCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmt1 ENSRNOG00000002989 ENSRNOT00000004046 2 1 1 80 10 91152211 91152229 TCAAGTTCTCCCACCTGAG 59 91152273 91153951 CTGTCTTGGGAGTCTCTGG 59 NA Rattus norvegicus 81 Anp32a ENSRNOG00000014846 ENSRNOT00000020443 3 1 1 80 8 67330171 67330193 TAGTGGAAGATGAAGAGGAAGAG 59 67330231 67332744 CTTCATCCTCCTCTTCCTCTC 59 NA Rattus norvegicus 81 Lynx1 ENSRNOG00000006086 ENSRNOT00000076708 3 1 1 84 7 115986647 115986666 GCCTACAATGGAGACAACTG 59 115986468 115986601 GGGTGAAGTAAGTTCGAGTG 58 NA Rattus norvegicus 81 Hars2 ENSRNOG00000016087 ENSRNOT00000021797 2 1 1 80 18 29635189 29635293 TGGAATTGCCGATAAGATCTC 58 29635332 29635353 ACTGCTTCATAAATGACTCCTG 59 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000064511 3 1 2 80 1 201906215 201906234 CCATGTTTCTACTGACAGGA 57 201905326 201906172 GTTGATCGTCTCCAGATGG 58 NA Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 1 2 2 80 X 43628856 43628877 CTTTGTGATGAGTGATTACCGA 59 43629007 43629255 CGACACTTCATAGCAACCTG 59 NA Rattus norvegicus 81 aicda ENSRNOG00000015478 ENSRNOT00000020762 2 1 1 81 4 155359940 155359958 GAAGCAAGCTCCCTTTGAC 59 155360003 155365955 TTCATCAAGAGGCTGTCCA 59 NA InUTR Rattus norvegicus 81 Lamtor2 ENSRNOG00000019908 ENSRNOT00000026974 1 1 1 104 2 187914461 187914776 AGTCCAAAGTACCCTGCTG 59 187914375 187914393 CAGATGTTACTGGCGATGG 58 NA Rattus norvegicus 81 B9d2 ENSRNOG00000028753 ENSRNOT00000028029 2 1 1 61 1 82476563 82476581 CATTGACCTGCACTTTGCT 59 82479122 82479140 ACACCTGGAGATGAAGTCG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017624.1 ENSRNOG00000048808 ENSRNOT00000060297 2 1 1 96 15 29369284 29369462 CAGCTGAACTGTGTAAGCAG 59 29369207 29369225 TGTAGGTGCAGACGATAGC 59 NA Rattus norvegicus 81 Mrps12 ENSRNOG00000019949 ENSRNOT00000027029 2 1 1 236 1 86923321 86923560 TACGACCCTGCTAGTTTGG 59 86921147 86921165 ATAAATGTGCGCAACACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Necap1 ENSRNOG00000009236 ENSRNOT00000013272 3 1 1 80 4 155717333 155718016 ATCACTTCAAGTGGGTAAAGC 59 155718056 155718076 CTAAATCCAACTTGGGACGAC 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 1 3 3 80 2 188198532 188198553 GATGAAGAAGATGAACTGTCCT 58 188198592 188200371 CAGTTTCTCCATTGTTTCCTG 58 NA Rattus norvegicus 81 Sema4b ENSRNOG00000025167 ENSRNOT00000030914 2 1 1 80 1 142012134 142012155 CTGCAATATTTCAGCCAAGG 58 142012726 142012744 TTCACTGTGTTTGCTTGGA 58 NA Rattus norvegicus 81 Sptlc3 ENSRNOG00000004443 ENSRNOT00000005920 3 1 1 80 3 132653931 132678699 GGAAACTTTGGAGGTGTGC 59 132678742 132678761 TCCCATCTCTATAAGTCGCC 59 NA Rattus norvegicus 81 Zcchc10 ENSRNOG00000006943 ENSRNOT00000009098 2 1 1 80 10 38668200 38671834 TTACTGCAGCAAAGCATGG 59 38673494 38673514 GGTACTCGTGACACTCTTAGG 60 NA Rattus norvegicus 81 Trmt1 ENSRNOG00000002914 ENSRNOT00000003941 1 1 1 80 19 25804581 25804829 AGGGAATCCAGATCAAGGT 58 25804871 25804891 CTGTTTCCTCCTCTTGATCAG 58 NA Rattus norvegicus 81 Mir509 ENSRNOG00000054747 ENSRNOT00000077913 2 1 1 60 X 155317224 155317244 TCCAGAATATGGCAATCATGC 59 155317266 155317284 GTGTTACTCCACTGCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcea1 ENSRNOG00000022323 ENSRNOT00000010893 3 1 1 80 5 14528161 14537775 CCTGGAATTATTACAGTCCACG 59 14528102 14528125 GATGTGACTTCTTCATCTGTACTC 59 NA Rattus norvegicus 81 Gabrp ENSRNOG00000032417 ENSRNOT00000043036 1 1 1 80 10 18488623 18488641 TTCCTGGTGGTGTTATCCT 58 18487926 18488579 TGTTGTCACTCCAATGCAG 58 NA Rattus norvegicus 81 Pde9a ENSRNOG00000001174 ENSRNOT00000001559 2 1 1 80 20 10194646 10199195 CCAATGAGATGCTGAGCTG 59 10199239 10199257 GTGTGATTGGGTTGATGCT 59 NA Rattus norvegicus 81 Tdp2 ENSRNOG00000018246 ENSRNOT00000059570 1 1 1 80 17 42236220 42240614 CGAGGACTATGTTGATCTAACC 58 42236161 42236180 TCTAGAGGAGTTCCAGATGG 58 NA Rattus norvegicus 81 Elp3 ENSRNOG00000014291 ENSRNOT00000019262 1 1 1 80 15 48943977 48957773 AGTTATATCAGGAGTCGGCA 58 48943916 48943935 AGCATCTTTACCATGTACGG 58 NA Rattus norvegicus 81 Sash1 ENSRNOG00000013160 ENSRNOT00000017688 3 1 1 80 1 2817586 2817605 AACTCTACCCGAAGAGTCAG 59 2812297 2817544 ATGTTCCTCTCCACCTTCTG 59 NA Rattus norvegicus 81 Ltbr ENSRNOG00000019264 ENSRNOT00000026184 2 1 1 90 4 157828192 157828213 GTGTATTTGGACAATGAGTGTG 58 157827790 157828144 TAATTTCATCTGTGACCTCAGC 59 NA Rattus norvegicus 81 Sms ENSRNOG00000007688 ENSRNOT00000010135 1 1 1 80 X 40393378 40394112 TGGTCACTATGGTAGAGATTGAC 60 40394148 40394170 CTAAGACATCTCCACATGTTCTG 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 2 2 2 80 2 188008255 188008421 GAATTCCCATGGGATTGAAGAG 59 188008461 188008480 TCCACATTGGACAACAACTC 59 NA Rattus norvegicus 81 Lcmt1 ENSRNOG00000014565 ENSRNOT00000019640 3 1 1 80 1 193376923 193376941 CAGCCAACCTCCTAAAGTG 58 193376985 193382892 GGTCATCCATGTTGACCTG 58 NA Rattus norvegicus 81 Mid1ip1 ENSRNOG00000003228 ENSRNOT00000004305 1 1 1 95 X 13116253 13116551 AGTGCAAGAGATCAAGGCT 59 13116176 13116194 TTCTGTCTCAGTTCAGCCC 59 NA InUTR Rattus norvegicus 81 Pabpc1l ENSRNOG00000012750 ENSRNOT00000055172 1 1 1 80 3 160412917 160412938 AATTCCATTGACAACAAGGCTC 60 160412973 160416844 CTCATTGTATACCACCTTAGAAGAC 59 NA Rattus norvegicus 81 Rpl5l1 ENSRNOG00000037220 ENSRNOT00000056238 1 1 1 60 10 112564452 112564473 AGTACATCAAGAACAACGTGAC 59 112564413 112564436 GCATGAGCTTTCTTATACATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC130940.1 ENSRNOG00000046229 ENSRNOT00000068212 3 1 1 131 15 33637414 33637432 TTTGAGTGTCCTGAGGACC 59 33637867 33637885 AGAAGGACGAGGAGATGGA 59 NA DesignNoJunction Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 3 2 2 80 1 80710176 80710195 AGCATCCTACAGACCATTCC 59 80708335 80710133 GTAGAGGAAGATGCCGTCC 60 NA Rattus norvegicus 81 Car5b ENSRNOG00000029330 ENSRNOT00000047354 1 1 1 80 X 32244634 32255120 GAATCGAGCCTTACCTCCA 59 32255164 32255182 CATCGGATGTTGATGGGTG 59 NA Rattus norvegicus 81 Slc4a1ap ENSRNOG00000004901 ENSRNOT00000006525 2 1 1 80 6 26222608 26225920 AACAGTAGGGAAGTTGCCA 59 26222546 26222566 TCCTCTACTTCAGGTTCATCC 59 NA Rattus norvegicus 81 Ms4a6c ENSRNOG00000047349 ENSRNOT00000072077 2 1 1 80 1 227673655 227676404 CAAATCCTTTGGTAGATGGCA 59 227676444 227676464 CAGAGATGATAATGATGCCCA 58 NA Rattus norvegicus 81 Zmym2 ENSRNOG00000008734 ENSRNOT00000011684 2 1 1 80 15 37217409 37217942 AGCTAAAGTCCTCCAAATCAG 58 37217984 37218002 GGGCTAAGCCATAGTTGAG 58 NA Rattus norvegicus 81 Foxa1 ENSRNOG00000009284 ENSRNOT00000009940 2 1 1 67 6 78549555 78549573 GACTGGAACAGCTACTACG 57 78547257 78547275 GAGTTCATGTTGCTGACCG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1551 ENSRNOG00000046134 ENSRNOT00000041679 3 1 1 60 11 43521619 43521640 GTACAGACCCTACTCTTAACCT 59 43521659 43521679 ACTACCTGTATTGAACCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 1 2 2 80 12 19520751 19525972 ACATGAGAAACATGGCCCT 59 19526016 19526034 GGTGGTAGAATCCAGAGGG 59 NA Rattus norvegicus 81 Psmb4 ENSRNOG00000020979 ENSRNOT00000028484 3 1 1 80 2 196045873 196045891 ATGCTAGGTGCTTCAGGAG 59 196045596 196045830 CAGCTCCTCATCAATCACCA 60 NA Rattus norvegicus 81 Olr806 ENSRNOG00000055368 ENSRNOT00000078533 3 1 1 60 4 72222195 72222217 CTATCCTACATCCAGATCATCTC 57 72222236 72222255 TCTTTCTTCCCTCTTTGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir880 ENSRNOG00000041210 ENSRNOT00000062963 2 1 1 60 X 151282034 151282054 ACTCAGATTGGTATGAGTCAC 57 151281994 151282015 TTGCTCTACTCAGAATGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248,ENSRNOT00000075545 3 2 2 107 20 10440079 10440099 CTTGGATGTGAAGCACTTCTC 59 10440167 10441473 ATGTAGCCATGGTCATCCTG 60 NA Rattus norvegicus 81 Hoxd3 ENSRNOG00000001577 ENSRNOT00000033511 2 1 1 159 3 61658535 61666296 GGATCCAGGTTACCTGGAG 59 61666418 61666437 ATAGTATGCAGCCTTCTGCA 59 NA InUTR Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 3 1 1 64 3 147982540 147985576 TAACTCAGGTGACCAAAGCT 59 147982495 147982515 CCCTAAATTATCCTTCCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Bzw1 ENSRNOG00000013977 ENSRNOT00000019486 3 1 1 80 9 65289046 65289841 AGCACTTGAAGCAATACAGC 59 65289880 65289902 GAATCTTCAGTAACAGAGTCAGC 59 NA Rattus norvegicus 81 Itpka ENSRNOG00000005284 ENSRNOT00000007247 1 1 1 80 3 111551577 111551595 TCAACCTGCCTGTCATGAG 60 111551638 111551732 CAGCTTTGAAACTCCCTGTG 60 NA Rattus norvegicus 81 Kctd9 ENSRNOG00000012951 ENSRNOT00000017566 1 1 1 80 15 44426496 44426703 GTTCAAGGACAAAGGTGTCTG 60 44426743 44426763 TCAAAGTACTCAGGACTTCGG 60 NA Rattus norvegicus 81 Olr1431 ENSRNOG00000031194 ENSRNOT00000046817 2 1 1 60 10 44229425 44229444 CCTTCCTCCTGATTGTTCTC 58 44229463 44229485 GAGTCTATTCTTATCACAGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbbp7 ENSRNOG00000005157 ENSRNOT00000066676 3 1 1 80 X 33657145 33657165 GGTTGCTCGAGTTCATATTCC 59 33656525 33657104 CCACCAAATTCTCCCTTGTC 59 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 1 2 2 82 13 98525066 98525085 CTCTGATCATGATCAGCGTC 58 98522388 98525023 ATGGATGAACTTGTAACAGCG 59 NA Rattus norvegicus 81 Lrrc30 ENSRNOG00000030389 ENSRNOT00000049720 2 1 1 60 9 115850291 115850310 CCCAAAGAAGTCAGTCTCCT 59 115850250 115850268 CCAGGCAGTTCATGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563378 ENSRNOG00000048574 ENSRNOT00000050544 3 1 1 60 X 45637426 45637444 ATCTTCACAAGTGCGTCAG 58 45637467 45637486 GATATGGTTGTTGATGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144,ENSRNOT00000077185 2 2 2 81 10 39447972 39451257 GCTTCCAGGAACAAAGTACC 59 39451300 39451319 GTCTCCTTCGTTGTAAGCTG 59 NA Rattus norvegicus 81 LOC100911376 ENSRNOG00000029142 ENSRNOT00000042829 1 1 1 60 1 171059890 171059909 GCCTATGTGTTGGTGTTGAC 60 171059849 171059868 TTGGGTGGTTCCTAATTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myadml2 ENSRNOG00000036681 ENSRNOT00000054948 3 1 1 60 10 109826284 109826304 TAGTGTATACCTTCCTGGCTG 59 109826244 109826262 AAGACTGGCCAAATGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Primpol ENSRNOG00000022320 ENSRNOT00000029868 1 1 1 80 16 48875450 48880575 CACTGCTTGTACAGCATGTC 60 48880616 48880636 CCAGGTTGAGAACATCTTCAG 59 NA Rattus norvegicus 81 LOC102549011 ENSRNOG00000050178 ENSRNOT00000072727 2 1 1 68 X 51792409 51792430 AGCTGCCTACAAATTATATCCC 58 51792183 51792201 TTTCCACGTTTGTTGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Spink6 ENSRNOG00000046265 ENSRNOT00000072078 2 1 1 61 X 43044947 43044965 CAGGTGTCTTTCTGCTCCT 59 43042272 43044922 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Arhgap25 ENSRNOG00000009347 ENSRNOT00000012645 3 1 1 80 4 119254083 119256093 CAACAACACAGCAAGTAGC 58 119254021 119254041 TTTCCACTATCTTCCTGATGC 58 NA Rattus norvegicus 81 LOC100910173 ENSRNOG00000003918 ENSRNOT00000005292 3 1 1 81 10 104169494 104172530 GGGAGCCCAAGATCTACAG 59 104169431 104169451 CCTTTGTAGAAGACGAAAGGG 59 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678,ENSRNOT00000028585 3 2 2 80 1 89391796 89397561 GATCACCATAACAGGAAATGC 57 89391736 89391755 ACCACAGAGCAGTAATACAC 57 NA Rattus norvegicus 81 Pcnp ENSRNOG00000028411 ENSRNOT00000039997 1 1 1 80 11 47061731 47061750 AGTTTGGATTTGCCATAGGT 58 47061793 47064056 CCTTAGGCTTACTTGCTCC 58 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 3 4 4 81 6 8257525 8257543 AAGGTCTCAGATGAAGCCG 60 8257585 8260436 ACTTCTGCATGATTTCTTCCAC 59 NA Rattus norvegicus 81 Il33 ENSRNOG00000016456 ENSRNOT00000022056 3 1 1 80 1 248141755 248141779 TACTCCGTTATTACGAGTCTTCC 60 248143223 248143242 GACTCATGTTCACCATCAGC 59 NA Rattus norvegicus 81 Upp1 ENSRNOG00000004972 ENSRNOT00000006765 1 1 1 80 14 89331056 89332481 CTTCAGGAGGGATAGGTCTG 59 89332523 89332542 CAAACTCTGGTTTGAAGCAC 58 NA Rattus norvegicus 81 Fntb ENSRNOG00000007660 ENSRNOT00000010588 2 1 1 80 6 99927135 99927156 CAGTACTTGTACTCCCTAAAGC 58 99927195 99935687 GTACGCACTTCTTACATCCAC 59 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 2 2 2 80 13 89392368 89395472 TAAGCATAGGAGATCCGACG 59 89395514 89395533 ACAAGAGTCCTATCAGCAGG 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108,ENSRNOT00000068493 2 2 2 81 10 56640490 56640508 TACCTAAAGGTGGCCAAGC 60 56640552 56647337 GCTGAGAATACGAGGTTGTG 59 NA Rattus norvegicus 81 Tll2 ENSRNOG00000013519 ENSRNOT00000018179 2 1 1 80 1 260357228 260359503 TCACTTCTTCTCAGACAAAGAC 58 260357169 260357188 TAGCTCCCAAATGTGTTGAC 58 NA Rattus norvegicus 81 Tll2 ENSRNOG00000013519 ENSRNOT00000018179 3 1 1 80 1 260412114 260412132 GGAAACATCTGCAAGGTGG 59 260399269 260412070 GTGCTATCCTTGCCATCCT 60 NA Rattus norvegicus 81 Uhrf1bp1 ENSRNOG00000000495 ENSRNOT00000049592 1 1 1 80 20 7464972 7468277 GCTCTTGGAGTCTGAGTCTG 60 7468318 7468338 CCTTGAATGCCACTATCATCC 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000091442 1 1 2 80 5 154869327 154869348 GTGGATCAGATCGTTGAATAGC 59 154869389 154869522 CAATGGAACAGGTACCTGC 59 NA InUTR Rattus norvegicus 81 Glipr2 ENSRNOG00000014838 ENSRNOT00000019916 3 1 1 84 5 59438235 59438253 ATTCTCAAACACAGCCCAG 58 59438300 59439945 CTTCCTTTCCTGTCTGATCG 58 NA Rattus norvegicus 81 Rn60_20_0009.6 ENSRNOG00000051451 ENSRNOT00000089078 2 1 1 60 20 1622852 1622873 GTCATCTTAGATCCAAGACTCC 58 1622813 1622831 GACATGCTAGGTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909919 ENSRNOG00000031054 ENSRNOT00000048537 1 1 1 60 8 42664201 42664219 CCAGCACTTACAACAACGA 58 42664242 42664261 GACACGACAATATTCATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD735029 ENSRNOG00000019276 ENSRNOT00000026273 3 1 1 91 18 31397847 31397948 ACTTTGACAGATCAGGCTCC 60 31398002 31398020 ATGAGCAGACATCCAGTGG 60 NA Rattus norvegicus 81 Olr1742 ENSRNOG00000053860 ENSRNOT00000084564 3 1 1 60 20 1838603 1838623 TCTCTTATTGCTTTCCTGCTC 58 1838644 1838663 AGCCAAAGCCATCATTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp74 ENSRNOG00000048894 ENSRNOT00000073092 1 1 1 80 1 88235420 88235665 AACTTAATCACAGTTGGCCC 59 88235359 88235377 CACTACACATGGCTCTTCC 58 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 3 2 2 83 3 44084995 44085013 CTTTGTTGTTCACCAGGCC 60 44081637 44084948 CATGGATGCCCTTCTTGGA 60 NA Rattus norvegicus 81 Rn60_20_0038.2 ENSRNOG00000060724 ENSRNOT00000085984 2 1 1 60 20 1678431 1678450 GAAGTCAGAATCCGAAACCA 58 1678390 1678412 CAGATTTGAATCGGAGATAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r50 ENSRNOG00000049200 ENSRNOT00000039327 2 1 1 80 4 156484066 156484086 ATAGGAGGCATTTCAACAGGA 59 156484128 156494212 AGCATAGCTGATCTGAGGG 59 NA Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 1 1 1 66 18 35196585 35196603 CTTCATTCGATGCTCCTGG 58 35197277 35198435 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 1 2 2 80 1 192026236 192027054 GATTCACTCCATTACAGGTCTC 58 192027094 192027113 CTCAACGTCTTGTCTTCAGG 59 NA Rattus norvegicus 81 Tryx5 ENSRNOG00000028989 ENSRNOT00000048779 3 1 1 85 4 69157252 69157683 TCAACTAAGGAAGTCTCAGC 57 69157186 69157205 TTGGTTATACCTGCTTTCCC 58 NA Rattus norvegicus 81 LOC102554388 ENSRNOG00000048510 ENSRNOT00000071412 1 1 1 60 8 41916766 41916787 TACATTCTTGGTTTCCATGCTG 59 41916806 41916826 CTTGACATCCTTGTTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March8 ENSRNOG00000012297 ENSRNOT00000017294 3 1 1 80 4 148392581 148394238 ACCTTTGAGGAAATGGGAG 57 148394282 148394300 ATGACATGGAACGTCACTG 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 2 1 2 61 X 53234650 53234806 TACTACCAATGCCAGGGTC 59 53234607 53234627 TGTCTTAGAGCTGCTTCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ctsb ENSRNOG00000010331 ENSRNOT00000014177 3 1 1 84 15 46330956 46331696 CTCTTGTTGGGCATTTGGG 59 46331743 46331762 AGACACCTCCACATTGACTC 60 NA Rattus norvegicus 81 RGD1561661 ENSRNOG00000023094 ENSRNOT00000030170 3 1 1 60 X 13442071 13442089 ATTAGCGACTACCTGACCA 58 13442113 13442131 ACTCACTCAGGCTTTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 2 2 2 86 1 213977332 213977598 GTATGCCAGCATGTCTGAC 59 213976471 213976489 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550,ENSRNOT00000091101 2 2 2 90 1 88961382 88961486 CTATCTGAAGGACACTCACGA 59 88961538 88961556 ACCTCTCACCAACTTCACC 59 NA Rattus norvegicus 81 Cpm ENSRNOG00000034134 ENSRNOT00000044413 1 1 1 80 7 60654736 60685021 GGTGAGAGGTAGAAACTTGTG 58 60685061 60685081 TATTTGAACTCTGGAATCCCG 58 NA Rattus norvegicus 81 Vom1r35 ENSRNOG00000033755 ENSRNOT00000049179 1 1 1 60 1 72128600 72128618 CAGCACATTCACTCCTCCA 60 72128558 72128576 TGTAGGCTGCTTTGGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vmo1 ENSRNOG00000026508 ENSRNOT00000029421 2 1 1 154 10 57121277 57121406 GGTTCTCTGTCAAGGTGGA 59 57120828 57120846 CAGAGGCTCACTCCATGAG 60 NA Rattus norvegicus 81 Olr596 ENSRNOG00000060685 ENSRNOT00000080503 2 1 1 60 3 76036032 76036051 ACTCTTGTGATTCCAATGCT 58 76036073 76036092 CCTTCACATCCTTGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slitrk5 ENSRNOG00000009649 ENSRNOT00000012785 2 1 1 60 15 96823591 96823610 CAAAGTGGGAGTGTTAGTGG 59 96823632 96823651 GGTCTCTGCGAATTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts8 ENSRNOG00000005574 ENSRNOT00000007358 3 1 1 82 8 32018934 32018954 CGCTTCGTGGAAATACTTCTG 60 32018997 32026321 ACTGTGAGGATGTGGTTCTG 60 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000032316 3 2 3 164 18 29492131 29492149 GAAAGTTCCTGCTGGAGTG 59 29492274 29492411 ATTGTTCGTCATCGGTTATCTC 59 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 2 2 2 94 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025915 99025933 CATCCTGCCGAATCTTCTC 58 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000016851 2 1 2 80 1 267607688 267607707 CTACAGCATGAGGTTCTGTC 58 267607750 267610341 TTGATGATTTCATGCCGGA 58 NA Rattus norvegicus 81 H1fnt ENSRNOG00000029545 ENSRNOT00000046402 1 1 1 60 7 139871754 139871773 GTCCTTGGTCTACAGATGAG 57 139871713 139871731 TCCTGTCTCTTCTCTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909989 ENSRNOG00000031423 ENSRNOT00000047107 3 1 1 60 8 42651046 42651066 TGTGGTCTTTGTTCTAGTTGG 58 42651088 42651106 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfand3 ENSRNOG00000059659 ENSRNOT00000085131 3 1 1 98 20 8827141 8827160 AACTTCACCGAGTGAAGAGG 60 8843420 8876263 GACTGTGAATCTGCACCAC 59 NA Rattus norvegicus 81 Vom1r44 ENSRNOG00000033483 ENSRNOT00000046788 3 1 1 60 1 67175128 67175147 GAAATATGGCAACTGCACTG 58 67175087 67175107 CTCAAACACAAGCCATCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngrn ENSRNOG00000013553 ENSRNOT00000018107 2 1 1 80 1 142051184 142055344 GAACAGATCCGGTATTTACATAAGG 60 142055382 142055400 AGTGCTGACATCAAAGCCT 60 NA Rattus norvegicus 81 Ngrn ENSRNOG00000013553 ENSRNOT00000018107 3 1 1 80 1 142051124 142051142 ATTCGAAGGCAAATGGAGG 58 142051183 142055340 ATGTAAATACCGGATCTGTTCC 58 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 2 2 2 80 1 100856286 100856304 TGACCTAGATGGGACCCTC 60 100856347 100856451 GGGTACAGAATCCTCCAGTC 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997,ENSRNOT00000018147 2 2 3 80 X 62567597 62567615 CCAAGCAGGAACTGAAAGG 59 62563034 62567554 CAATGACAAAGTTTCCGGTG 58 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000083651,ENSRNOT00000045099,ENSRNOT00000086105,ENSRNOT00000081321 2 5 5 80 16 19734339 19734358 GAACTACCAAGTCACTGCTG 59 19734398 19735074 TGTTAAGAGATGTCTGGAACTG 58 NA Rattus norvegicus 81 AABR07066440.1 ENSRNOG00000045945 ENSRNOT00000051043 2 1 1 60 9 8899044 8899062 AGAGCCACAGACTTAGGAC 58 8899002 8899022 GATATGACAAGATCCACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh3B ENSRNOG00000007316 ENSRNOT00000009681 1 1 1 80 3 122810882 122810900 CGGCACAACAATCTAGACC 59 122810724 122810838 CCTTGCACTCTCATGTTCC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076353 3 1 4 65 19 758387 759994 CACAGCCAAGAAGTCAGGA 60 760019 760041 GTCATTCTATCCAGTTCTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Asxl2 ENSRNOG00000011908 ENSRNOT00000015827 1 1 1 80 6 27907465 27909047 AGTTACTATGGTCAGAGTTCTGG 59 27909085 27909105 ATTTGCTTTGGGATCACTTGG 60 NA Rattus norvegicus 81 Kcnk12 ENSRNOG00000016110 ENSRNOT00000021570 2 1 1 105 6 11374922 11493592 TGTCGACCATAGGTTTCGG 60 11374835 11374854 TTGAAGAACAGGATGGTCCC 60 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 3 1 1 93 14 107349706 107349824 GAAAGAACAAGTACCGCCA 58 107349881 107349899 TTCTGGCTTTGAAGGATGG 58 NA DesignNoJunction Rattus norvegicus 81 Braf ENSRNOG00000010957 ENSRNOT00000014604 3 1 1 80 4 67453903 67454977 TACAGAATTCAGGACGGAGAG 59 67453843 67453862 AACATGTAGCTCCTCTCCAG 59 NA Rattus norvegicus 81 Pelo ENSRNOG00000061128 ENSRNOT00000091499 2 1 1 95 2 47267347 47267655 ATTCCTTCAGGTACACGCC 60 47267270 47267288 GCTTTCGTGTCTGAAAGGC 60 NA Rattus norvegicus 81 Olr1463 ENSRNOG00000003210 ENSRNOT00000004282 1 1 1 60 10 45939953 45939971 AGCCTAGACTCCAAACACC 59 45939911 45939930 CAGAGGTCCAGCATAGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lef1 ENSRNOG00000010121 ENSRNOT00000013694 3 1 1 80 2 236237450 236237471 CATGATGCCCAATATGAATAGC 58 236237511 236307880 ACTTTATTTGAGGTCCTCGG 57 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 2 2 2 80 18 29502893 29503076 GGAGCTAAGTGCTTTGCAG 59 29502831 29502850 AATACTGCTCTTCCCTGGTG 60 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777,ENSRNOT00000085681 3 2 2 80 10 81805320 81808909 CACAGAGGACTTGATGGAC 58 81808951 81808971 GCATCTTATGGAGTGATGAGG 58 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 2 2 2 80 9 61922579 61922600 CAGTAGAGATTGCACAAGATGG 59 61916078 61922540 CAGAATAAGGCTCTGGAACTG 59 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 1 1 1 74 1 94759447 94760667 AGACACCAGTCTTCTGGTG 59 94759391 94759409 AACAGACAGAGTGTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909754 ENSRNOG00000047153 ENSRNOT00000074462 2 1 1 60 10 61066568 61066586 TCCTCTTCTTGCTCTTCCT 58 61066610 61066628 ACAATGAGCAGATTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770,ENSRNOT00000019309 2 3 3 80 1 193257044 193260839 CCAAACAAGAAGGAACCCTG 59 193256983 193257004 GCTGGATGATAGGTTCAATCAC 59 NA Rattus norvegicus 81 Foxp1 ENSRNOG00000009184 ENSRNOT00000013271 1 1 1 80 4 131376971 131378749 AAGATCAGTGGTAACCCTTCC 60 131376911 131376931 CTGTAAAGCTGCATTGAGAGG 59 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 3 1 1 97 1 238834001 238834019 GAGAAGATGGCTGCTAGCA 60 238833706 238833940 CAAATAGCTTCCACCTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 2 2 2 80 17 42813730 42813752 GAGCCATAGAGCTTAACTATGGA 60 42812813 42813691 CAATTCCAGGCTGAATCCTG 59 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 3 1 1 73 1 89132656 89132843 CCTCTACTTCAGCATCCAGG 60 89132602 89132620 GAGATGAGTTCCGGTAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1253 ENSRNOG00000046873 ENSRNOT00000044859 3 1 1 60 8 42376764 42376785 CTCACACCATTTGCATAATGAG 58 42376725 42376746 AAGTAGTGGTTGATTGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012868.1 ENSRNOG00000030847 ENSRNOT00000046960 3 1 1 81 2 212436024 212436043 AGTTATCGACCCAGTCACAG 59 212436084 212436224 TCTAGTGTCACAGGAGAAACTG 60 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 2 2 2 80 19 25789027 25789045 AGATGAGCAGTACCGTCAG 59 25788885 25788984 TCCACCTTCTCAACTGTCTG 59 NA Rattus norvegicus 81 Setx ENSRNOG00000013491 ENSRNOT00000017984 2 1 1 80 3 7688996 7692062 CATGAGCGTGTTAATGAACTG 58 7692101 7692122 TTTGTCAAAGACCTGAAAGGAG 59 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 3 2 2 80 1 211381620 211383134 AGCTTTCTAAGACCCTGGAG 59 211383828 211383849 TTTGTTTCCGATACCTCAACAG 59 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000086771 1 1 6 86 1 261995435 261996440 AGGAGATTCAGAACGCCTG 60 261995367 261995386 GTATGGCTACTCACTCCCAG 59 NA Rattus norvegicus 81 LOC100910428 ENSRNOG00000050475 ENSRNOT00000073232 1 1 1 87 4 133540715 133540733 AAGGTGATGAGCCCATCAC 60 133540780 133541072 TCATATTGACCAGGCAGATAGAG 60 NA Rattus norvegicus 81 LOC100910428 ENSRNOG00000050475 ENSRNOT00000073232 3 1 1 95 4 133540706 133540725 GATGGAAGGAAGGTGATGAG 58 133540780 133541071 CATATTGACCAGGCAGATAGAG 58 NA Rattus norvegicus 81 Cldn20 ENSRNOG00000023531 ENSRNOT00000030132 3 1 1 60 1 44447066 44447087 GAATGAAATGCACTCACTTAGG 58 44447108 44447126 CCAGCAAAGGAAATGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 3 2 2 80 10 38931437 38932182 GGTTGGAGGTTAAAGAAAGGC 60 38932224 38932242 TGTCGTCAGCATTGTTGAC 59 NA Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000077111 1 1 2 80 9 49481489 49481507 CAGACTGAACAGGAAAGCC 59 49481551 49481653 GGTCTCAAAGGCTCTTTCG 59 NA InUTR Rattus norvegicus 81 AABR07012314.1 ENSRNOG00000043111 ENSRNOT00000045938 3 1 1 87 2 192978178 192978196 TCTGGATGCTGTAGCAGTG 60 192978067 192978085 AGCAGCAATCTCCAGACTG 60 NA DesignNoJunction Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000023383 3 1 2 80 19 40937508 40937526 AATACCATCCTGCTCACCT 58 40936171 40937464 GTTCTGGCTTTCCAGAGTC 58 NA Rattus norvegicus 81 Abca15 ENSRNOG00000027505 ENSRNOT00000037026 2 1 1 80 1 190146261 190146279 GCCAATGCTTCCATAACAG 57 190146323 190146481 CTTCCCATAGGTACTCCGT 58 NA Rattus norvegicus 81 Bmpr2 ENSRNOG00000022196 ENSRNOT00000035238 1 1 1 80 9 66620526 66647084 GATACAACACCACTCAGTCC 58 66647126 66647145 TAATACAGAAACCGATGCCA 57 NA Rattus norvegicus 81 Slc1a4 ENSRNOG00000005248 ENSRNOT00000007002 1 1 1 80 14 104599370 104611898 GGATTTACTCAGAAACCTGTTCC 60 104597897 104597915 ACGACCACTGTGTAACTGG 60 NA Rattus norvegicus 81 Mir6327 ENSRNOG00000050007 ENSRNOT00000072658 2 1 1 60 10 68977685 68977703 TGGTAGACTGCGATGTCTG 59 68977643 68977662 GATGGATCTACAGTCCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352,ENSRNOT00000088802 3 2 2 80 X 37336212 37336802 AGAATTAACAGGACGAAGAGGA 59 37336843 37336861 CCGCCATAGAAGTTCTTGG 58 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000011984,ENSRNOT00000080155 3 2 2 80 7 98823657 98824860 CCTCCCAAGTTTCAGATTACG 59 98823597 98823616 TGGAGGACTTGTCAAATTCC 58 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000077573,ENSRNOT00000088815 1 3 3 80 3 72407030 72407048 CTGTGACATCATCCTGCTC 58 72406467 72406986 GTTGTCTCAGTCACCTCCT 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000043870,ENSRNOT00000070918,ENSRNOT00000046246,ENSRNOT00000052367,ENSRNOT00000042251 2 6 6 92 6 4298693 4302985 AATTCAAGAGCACTGTGGAC 59 4298620 4298638 TCGCTTCAATGAACTGCTC 59 NA Rattus norvegicus 81 Slc35e1 ENSRNOG00000012287 ENSRNOT00000016399 2 1 1 81 16 19061521 19062301 ACAACAAGACCAAGTATGATGC 59 19062341 19062361 TCTCTGTTGCTTAGGTCTGAC 60 NA Rattus norvegicus 81 Tspear ENSRNOG00000001219 ENSRNOT00000038419 3 1 1 80 20 11528128 11528147 TCTGATCTTGGCTGTGTCTC 60 11526870 11528086 GGAACATCCGCCATTATGTC 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000027895 1 1 4 80 15 34780561 34780579 TTAAGGGACAGCTGTGGTG 60 34780618 34781195 GACAGTGATTTCTCCATTACAGTG 60 NA Rattus norvegicus 81 Slc17a2 ENSRNOG00000017180 ENSRNOT00000023241 3 1 1 82 17 43575525 43575544 TTCACAATTTGGGCGAAGTG 60 43573416 43575480 GATCCAAATGCTGCTCCTG 59 NA Rattus norvegicus 81 Mdh1 ENSRNOG00000008103 ENSRNOT00000011429 3 1 1 80 14 106387753 106387771 CATGATGGGTGTTCTGGAC 58 106386119 106387710 TCTGTTGCAATGACATCCTG 59 NA Rattus norvegicus 81 Slc36a2 ENSRNOG00000011892 ENSRNOT00000016440 1 1 1 80 10 40508245 40509004 ACATCATCCAGGGAATTCCA 59 40508184 40508202 CTGTTCCAAAGAAGAGCGG 59 NA Rattus norvegicus 81 Supt5h ENSRNOG00000032034 ENSRNOT00000048905 3 1 1 80 1 85460645 85460665 CAGCTTCATGCATACTCAGAC 59 85460798 85460902 ATGCATGTTGAGAACATCCTG 59 NA Rattus norvegicus 81 AC126897.1 ENSRNOG00000051957 ENSRNOT00000083600 2 1 1 61 1 221994018 221994036 TGGTGAGGTATTTCCTGGG 59 221993972 221993990 GAAGGCTGTGAACACTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r-ps112 ENSRNOG00000050623 ENSRNOT00000059671 2 1 1 60 1 60828172 60828192 TTTCTTTCTCCTCTACCACTG 57 60828132 60828152 TATAGACCTCAACCTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0013.1 ENSRNOG00000061444 ENSRNOT00000043674 3 1 1 60 20 1300347 1300365 CCATCTAGTTCTCCCTCCT 57 1300384 1300407 GAGTTACCAGAGTATACATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911545 ENSRNOG00000045772 ENSRNOT00000075799 1 1 1 80 4 154438206 154440933 CCGCATCCCTGATTTATGAC 59 154440975 154440994 TGTCTTCTTCCCGTTGATCC 60 NA Rattus norvegicus 81 Rn60_X_0634.2 ENSRNOG00000051252 ENSRNOT00000076647 1 1 1 60 X 63329840 63329858 TACTCCAATGAGGACACCC 58 63329798 63329816 CCTTATCAAAGTGCTCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0634.2 ENSRNOG00000051252 ENSRNOT00000076647 2 1 1 60 X 63329715 63329734 GTTGTAACCTCATCACTGGA 57 63329674 63329693 GCAAAGGCATTCTTTCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap52 ENSRNOG00000037718 ENSRNOT00000005066 3 1 1 82 10 54486431 54491575 AATTCAGCTTGGGAGTGTC 58 54486367 54486385 GAAGATCAACAAGCCAGCT 58 NA Rattus norvegicus 81 Ces2h ENSRNOG00000039079 ENSRNOT00000019072 2 1 1 80 19 37063679 37064071 TGACGTTGTCTATAGAACAGTG 58 37064112 37064130 CCTCGTAGACAGTTCACCA 59 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 3 2 2 81 9 5306580 5312558 TAGGATTGTGGATCAGTGTCC 59 5306519 5306539 TATTTAGCATGCACAGCAGTG 59 NA Rattus norvegicus 81 Mst1 ENSRNOG00000019680 ENSRNOT00000026711 2 1 1 80 8 116861627 116861646 CCTCCTGAACAGTATGTGGT 59 116861687 116861798 GCTATTGCTTGTACCTTTGGA 59 NA Rattus norvegicus 81 Il3 ENSRNOG00000026786 ENSRNOT00000031762 1 1 1 80 10 39621113 39622669 CAATCTGAGGAATAGTACCTTGC 59 39621055 39621075 GTGTCCTGAGAATCAAACTCC 59 NA Rattus norvegicus 81 Smyd5 ENSRNOG00000015589 ENSRNOT00000020909 2 1 1 80 4 117228663 117228684 CTGTATCAGCTACTTAGACTGC 58 117228723 117228822 AACAAGTAGTTCTCCCTGAGG 59 NA Rattus norvegicus 81 Lppr4 ENSRNOG00000016872 ENSRNOT00000022625 1 1 1 80 2 220334547 220334567 TCAGTATAAGAACCATCCCGT 58 220334608 220337879 GCATACAGGCCCAAATACAG 59 NA Rattus norvegicus 81 Vom1r37 ENSRNOG00000038647 ENSRNOT00000058999 3 1 1 60 1 72210368 72210388 GCATTTACCAGTTTGTCACTC 58 72210409 72210428 ATTTCTCTGAGCATGACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr510 ENSRNOG00000052014 ENSRNOT00000090000 1 1 1 60 3 73879546 73879570 CTTCCTCTTTCTAGCAATTTACCTC 60 73879510 73879534 CAGAGCAATTAGTCCTATATTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btn1a1 ENSRNOG00000017514 ENSRNOT00000023622 1 1 1 81 17 43905461 43906355 AGATCTCCTTACCAGCTCC 58 43906399 43906418 AACCCTAAGGCCAATATGAC 57 NA Rattus norvegicus 81 LOC100911893 ENSRNOG00000048946 ENSRNOT00000074948 2 1 1 60 8 18037369 18037389 CCCTGAGGTATACAATCACCA 59 18037329 18037347 AGACAGAGCAGAACAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb3 ENSRNOG00000011825 ENSRNOT00000016060 2 1 1 81 9 65478749 65484010 ACATTGCTGTCAGACATGG 58 65484053 65484073 GTCTGTAATCTGGAAGTTCCA 58 NA InUTR Rattus norvegicus 81 Sacs ENSRNOG00000014509 ENSRNOT00000019551 1 1 1 80 15 41507604 41507622 AGCCTCATCTTCTAGCTGC 59 41513496 41517621 ATGGTCTTCCTGAGTATCCC 58 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 3 2 2 81 6 23527230 23527249 CTTAAAGTTACGGGACCAGC 59 23510535 23527186 GGCCATAACCTCTTCACAG 58 NA Rattus norvegicus 81 Art1 ENSRNOG00000020251 ENSRNOT00000027427 1 1 1 81 1 167202109 167202130 TGAAGATCCCTGCTATGATGTC 60 167202168 167202503 GAGATGGAGTAACTTTGAACCTG 59 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 1 2 2 80 1 37740070 37740273 GGCTGCAAGGTAAAGAGTC 59 37740008 37740028 ACTCTAGGACAGAGGTTAGGA 59 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000085612 1 1 3 80 6 29046691 29046710 CTTCTTCTGATGAAGAGCGC 59 29046752 29049764 AGTTCATAGGCAAACACCTG 58 NA Rattus norvegicus 81 Npy2r ENSRNOG00000049213 ENSRNOT00000072029 3 1 1 60 2 181531232 181531252 TGGAGTAAGCTAAAGAACCAC 58 181531192 181531210 TTCGCTGATGGTAATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem114 ENSRNOG00000002768 ENSRNOT00000003749 2 1 1 124 10 7291424 7294984 TTTCTCTTCGGAGCCATGG 60 7295072 7295090 CGTATGTCCACCTGATCCA 59 NA Rattus norvegicus 81 Ints5 ENSRNOG00000026005 ENSRNOT00000036115 2 1 1 60 1 225094759 225094778 AGAAGCCCTGAAGAGTTGAG 60 225094801 225094819 AGAGACTAACCACTAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heyl ENSRNOG00000015318 ENSRNOT00000020929 1 1 1 91 5 140930962 140932062 GCGCAGAGGGATCATAGAG 60 140932117 140932135 GTTTCTCAAAGGCAGTGGG 59 NA Rattus norvegicus 81 Rn60_14_0458.1 ENSRNOG00000051043 ENSRNOT00000077059 2 1 1 60 14 45951270 45951289 TATCTCTAGAAGTGCTGCCT 58 45951229 45951248 GTACTTCATCCCAAATGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ehd4 ENSRNOG00000007584 ENSRNOT00000010701 2 1 1 80 3 111924759 111941594 CTTTCATCAGATACTTACTGGAGC 59 111924702 111924722 CAGCAATGAAGGAATCTGTGG 60 NA Rattus norvegicus 81 AABR07035375.1 ENSRNOG00000046761 ENSRNOT00000071795 3 1 1 137 12 11808211 11808886 GAAATGACTGTTCAGATGGAGAG 59 11808096 11808114 TGGTCTCAGGAACTTGAGC 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 2 2 4 80 7 116744874 116744980 ACTCTTTCACTGGTACGACTC 60 116745021 116745040 AACAGTACACTGCCCTTCTC 60 NA Rattus norvegicus 81 Mcoln1 ENSRNOG00000000975 ENSRNOT00000001290 1 1 1 80 12 2060549 2061342 CAAGGGTAGTCACTGACTG 57 2061386 2061404 CCAAGAAGTCCAAGTCCTC 58 NA Rattus norvegicus 81 Eid2 ENSRNOG00000019310 ENSRNOT00000026114 1 1 1 60 1 85516716 85516737 GTTTACTATAGCCCTAACTGCG 59 85516677 85516699 GCAACCCAGTTCTTCTATTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a44 ENSRNOG00000025269 ENSRNOT00000068360 3 1 1 112 2 187782806 187786333 GAGCCAGACAGAAGGTCTC 60 187782712 187782730 ATTGTCATAGCCACACCGA 59 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216,ENSRNOT00000079368 2 2 2 80 17 47393589 47393607 TGAGCTGCCTGTCTATGAC 59 47392321 47393546 ATCCACTTCACATCTTCCGG 60 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 2 2 2 80 5 167142239 167147196 CAAGAGAAGACAGGGAAGC 58 167147240 167147258 CCCATACTGGAAGGAGGAG 59 NA Rattus norvegicus 81 Emg1 ENSRNOG00000012828 ENSRNOT00000017334 2 1 1 84 4 157223819 157223838 GTGACATTCGAGAGTTGGTG 59 157223448 157223772 TACTCCACACTGACCTTGC 59 NA Rattus norvegicus 81 Olr288 ENSRNOG00000021485 ENSRNOT00000029171 2 1 1 60 1 212679458 212679479 GAGAACTTGGTCATTATCACAG 57 212679419 212679437 GGTACATAGGCTTGTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000035590,ENSRNOT00000080694 1 3 4 80 19 41314590 41322182 AACTCGAAGCCCTTACTCAG 60 41314529 41314549 TCAAAGTTCACTTCCAGTTGC 59 NA Rattus norvegicus 81 Rn60_X_0587.3 ENSRNOG00000051287 ENSRNOT00000075855 3 1 1 187 X 59276009 59276032 GTGAAGATAATGATGACCTTCTCC 59 59275813 59275868 CTTCTTCTCCCAGAAGAAATTCAG 60 NA Rattus norvegicus 81 AABR07069845.1 ENSRNOG00000054847 ENSRNOT00000072823 3 1 1 60 8 41350885 41350906 CCTCACAGGCTTAATGTTTAGG 59 41350924 41350945 CATGTAGTGATTGATGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909609 ENSRNOG00000018683 ENSRNOT00000054897 1 1 1 80 1 207312510 207312528 CCTCACTCAAGAGTCCCTG 59 207312567 207321745 CTCATGTCTCCATACTTGTTAAGG 59 NA Rattus norvegicus 81 LOC100909609 ENSRNOG00000018683 ENSRNOT00000054897 2 1 1 80 1 207110952 207110970 CATGGAGGAGCTTCTCAGG 60 207111013 207221474 GCCACAAAGTTCCCAATGAG 60 NA Rattus norvegicus 81 Lemd2 ENSRNOG00000025864 ENSRNOT00000035819 1 1 1 80 20 6550706 6551492 CCCAGGAGTACATAGCTAACG 60 6550646 6550664 TGTTGCTGCTCAGTATCCA 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 3 2 2 61 16 19636635 19637533 AGAAATGGAGTTGTGGAAAGAC 59 19636595 19636616 AAGATTGCTTTACACTCACAGC 60 NA DesignNoJunction Rattus norvegicus 81 Gapdh ENSRNOG00000018630 ENSRNOT00000050443 2 1 1 82 4 157676820 157676838 CTTCCACCTTTGATGCTGG 59 157676646 157676778 GCCATATTCATTGTCATACCAGG 60 NA Rattus norvegicus 81 Tab3 ENSRNOG00000003643 ENSRNOT00000004854 1 1 1 80 X 54077148 54077168 GAAGCATGAACAGACAACTCC 60 54077204 54079761 CAAAGTTTCCTCTAGATTGAAGGAG 60 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 2 2 2 92 5 100960680 100960698 TGTAACTTGATGAGGCCGA 59 100957785 100960626 GTTGTTTATCCAGGGACAGTG 59 NA Rattus norvegicus 81 Olr1197 ENSRNOG00000048941 ENSRNOT00000049660 3 1 1 60 8 40263273 40263293 ATTTGATGGGTTTCTCTGAGG 58 40263312 40263333 CAGAAGGTCAGATTCATTAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G2e3 ENSRNOG00000004232 ENSRNOT00000005670 1 1 1 80 6 72119222 72119241 TCACAATCCACAAGTTACCA 57 72119282 72119503 CAGACTTTCCATCCTCTACAG 58 NA Rattus norvegicus 81 Ing4 ENSRNOG00000023363 ENSRNOT00000024116 2 1 1 80 4 157561979 157561997 ACGAACCCACATATTGCCT 59 157562040 157562293 ACTCAATGGAACAGTCTGGG 60 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 2 2 2 86 1 214414238 214414504 GTATGCCAGCATGTCTGAC 59 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Defb20 ENSRNOG00000023384 ENSRNOT00000031922 2 1 1 81 3 147952912 147955264 TTTGTGGTACTTGCAGACAG 59 147955308 147955326 CTAGTCTGCATCGCTTCCT 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 3 3 3 80 6 8320613 8320631 TTCGTCCGATGAGAAACAC 58 8320190 8320569 ACTGAAGGGTAATGCTGTG 58 NA Rattus norvegicus 81 Pinx1 ENSRNOG00000012012 ENSRNOT00000016027 1 1 1 80 15 47219224 47219242 ACCAGGATGACTTCAACCA 59 47219284 47222992 CCTTGTTGTCTGAGGAATCTG 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860,ENSRNOT00000074644 3 2 2 80 2 231875840 231875859 AGCTAAAGAAGAGGGCTCAG 59 231875699 231875799 AGAATTCCAAGTCTCTGTGCT 60 NA Rattus norvegicus 81 Edn1 ENSRNOG00000014361 ENSRNOT00000019361 1 1 1 80 17 22138008 22139400 CTAAGAAGGTTGGAGGCCA 59 22137946 22137964 GTCTCTGTAGAGTTCCGCT 59 NA Rattus norvegicus 81 Fosl1 ENSRNOG00000020552 ENSRNOT00000027891 2 1 1 145 1 220826757 220826775 GACCCTACCGAACATCCAG 60 220826884 220829260 ACAAGGTGGAACTTCTGCT 59 NA InUTR Rattus norvegicus 81 Ints1 ENSRNOG00000047880 ENSRNOT00000001727 3 1 1 80 12 18080997 18081600 TGACCGCAATTTCTTCCTG 59 18081644 18081662 AGTCCAATGACCAGGATCC 59 NA Rattus norvegicus 81 Slc25a37 ENSRNOG00000015495 ENSRNOT00000021636 2 1 1 80 15 51129202 51131472 GAATCCAGCAGAAGTGGTG 59 51129140 51129159 ACTGTCCGGATACAACTGAG 59 NA Rattus norvegicus 81 Olr1504 ENSRNOG00000045754 ENSRNOT00000050847 3 1 1 60 10 60772099 60772119 CTTGTCCTTCTCTGACCTCTG 60 60772059 60772079 CATGTTCTGAAGCAATTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910041 ENSRNOG00000046311 ENSRNOT00000073833 2 1 1 60 8 42885704 42885722 CACGATCATCCTGATCCTG 58 42885745 42885764 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema6b ENSRNOG00000045998 ENSRNOT00000070794 2 1 1 80 9 10943926 10943944 AACATCAGTGGTATGGCCC 60 10943987 10944583 TGTGAAGAGCATCCCATCTG 60 NA Rattus norvegicus 81 Sema6b ENSRNOG00000045998 ENSRNOT00000070794 3 1 1 80 9 10947577 10947899 GAGAACTCTGATACGGCAC 58 10947941 10947961 AAGACTATTGTCTGATTGCCC 58 NA Rattus norvegicus 81 Cav1 ENSRNOG00000056836 ENSRNOT00000078250 2 1 1 92 4 44598815 44598833 GAGAAGCAAGTGTACGACG 59 44598888 44628001 AAAGTCAATCTTGACCACGT 58 NA Rattus norvegicus 81 LOC100910438 ENSRNOG00000016622 ENSRNOT00000022525 2 1 1 80 X 82408680 82408700 CCCAACAATTGAAACAGACTC 58 82408113 82408640 ATGACCTGTTGAACACTTCTG 59 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 3 2 2 87 9 71265631 71269653 GCAGTATATTGCCATTACCCAG 59 71269700 71269719 CATGGTTAATGTCTGCAGGC 60 NA Rattus norvegicus 81 LOC690271 ENSRNOG00000003080 ENSRNOT00000004114 1 1 1 80 13 99982236 99982255 GAGCCCTGAGGTTAGAAGAC 60 99981454 99982195 GAGGTAAATGACTGAAGCGAC 59 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866,ENSRNOT00000057407 3 2 2 80 14 85253230 85255632 GGCAAAGATGTCAGTGCTC 59 85255674 85255694 GTACACCAGCTTCTTTAGCTC 59 NA Rattus norvegicus 81 Robo4 ENSRNOG00000050964 ENSRNOT00000060300 3 1 1 83 8 39888322 39888340 TCAGGACAGTGTACTCACC 58 39888387 39888533 GATACACTGTTCGTGGGTG 58 NA Rattus norvegicus 81 Ranbp9 ENSRNOG00000017951 ENSRNOT00000024174 2 1 1 80 17 24085743 24085761 ATCCAATACCAGCAGCCTG 60 24058126 24085701 CAATTCCCATGTAGCCATCTC 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776,ENSRNOT00000089894 3 2 2 80 10 104139827 104139847 TGGTTTCCATGCTGAATACAG 59 104139644 104139786 TCACTTTCATTGACTTGGGC 59 NA Rattus norvegicus 81 Cxcl12 ENSRNOG00000013589 ENSRNOT00000066670 2 1 1 80 4 149264119 149266239 TCAGATTGTTGCAAGGCTG 59 149266283 149266301 TCCAGGTACTCTTGGATCC 58 NA Rattus norvegicus 81 Rn60_5_0814.11 ENSRNOG00000051351 ENSRNOT00000076155 2 1 1 84 5 78041011 78041758 CTCGATGGGAAATCAAGATTCC 59 78040948 78040967 TATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Btrc ENSRNOG00000016280 ENSRNOT00000022426 1 1 1 80 1 265188846 265188867 AGAGAAGACTGTAATAATGGCG 58 265188907 265202877 ACAGCTGTTGTAAGTCTGTC 58 NA Rattus norvegicus 81 Adprh ENSRNOG00000027260 ENSRNOT00000038439 1 1 1 96 11 64866740 64867421 CAACACTGGTCCTACTTCG 58 64867481 64867499 CAAAGGGTTTCGGGAAGAC 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 2 1 1 60 13 99099825 99101100 AAGAAACCTCATCGTTACAGG 58 99099785 99099805 TCTGATAGCGTCTGATTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Fem1c ENSRNOG00000003578 ENSRNOT00000004784 1 1 1 80 18 40517207 40517226 AAGGACACAAAGAGATTGCT 58 40498873 40517166 GTGCAGTATTGCCTTTAACAC 58 NA Rattus norvegicus 81 Tmed9 ENSRNOG00000021882 ENSRNOT00000036140 1 1 1 83 17 9562698 9563342 GGATGCTGAGAGTTCACCT 59 9562633 9562651 CACTCAGCTTGTCTTTGGC 60 NA Rattus norvegicus 81 Gpr75 ENSRNOG00000022176 ENSRNOT00000033437 3 1 1 60 14 115276249 115276267 TCACCTTCCACCTTACCAG 59 115276290 115276309 ATCACAGCTACCATCTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 3 2 2 81 16 19767949 19768300 TACGAGCTTAAGTACCCACC 59 19768344 19768362 ACTCTTCGTACTGGTCCTG 59 NA Rattus norvegicus 81 Apool ENSRNOG00000004512 ENSRNOT00000005997 2 1 1 81 X 83714282 83714303 ACAGCCTGGTTATTTACAAAGG 59 83714345 83717972 ATAAATGCCCTTGCACCAG 59 NA Rattus norvegicus 81 Mms19 ENSRNOG00000046769 ENSRNOT00000075531 2 1 1 80 1 261192202 261192776 TACCCACTTCTGTGTTGCT 59 261192140 261192161 CAAGTCTCTTCTTGTCATCCAG 59 NA Rattus norvegicus 81 AC130391.3 ENSRNOG00000053025 ENSRNOT00000085865 2 1 1 82 17 43680330 43680350 CTCGTTTGTCAGAGGATACAG 58 43680394 43688850 CAAGTAATCGTGCCAGGAG 58 NA Rattus norvegicus 81 Ccdc167 ENSRNOG00000000531 ENSRNOT00000000639 2 1 1 80 20 8370006 8370763 CCTCGAAATATGAGAAGGAGCT 60 8369947 8369965 CTATGAAGATGGCCACCGA 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 3 2 2 80 4 179500993 179512375 GATCCTACGATAGAGGACTCCT 60 179500934 179500953 TGCTGTGTCGAGAATATCCA 59 NA Rattus norvegicus 81 Tnfsf11 ENSRNOG00000009559 ENSRNOT00000013210 1 1 1 80 15 62089198 62089217 GAAGACACAGAAGCACTACC 58 62073586 62089157 GTGTTGTAATTCCCTTTGCAC 58 NA Rattus norvegicus 81 E2f4 ENSRNOG00000015708 ENSRNOT00000021145 2 1 1 81 19 37253841 37253859 CAGAGGACGTCCAGAACAG 60 37254194 37255038 GCAAGGAGGGTATCTCCAG 59 NA Rattus norvegicus 81 Ttpa ENSRNOG00000007139 ENSRNOT00000009611 1 1 1 80 5 34024500 34027015 ATTAAGGGTCGGATTCATCTG 58 34027056 34027075 TTCCAGAGGAAGAATGTCTG 57 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213,ENSRNOT00000047823 1 2 2 80 X 77519800 77519818 AGCTCTTTAAACTGAGCCC 58 77519652 77519756 CACTGAAATTACTGCAGCC 57 NA Rattus norvegicus 81 LOC100909977 ENSRNOG00000042598 ENSRNOT00000066343 3 1 1 80 11 54185996 54187431 CTCTATCACAGTTCATTAGACTGC 59 54187468 54187488 TTCTCCTAGAGCTACTATGGC 58 NA Rattus norvegicus 81 Poll ENSRNOG00000016748 ENSRNOT00000023137 1 1 1 80 1 265293308 265293328 GGCTTGAAGCACTATGATGAC 60 265291730 265293266 TGATACTCGGACCATCTGC 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 2 3 3 82 17 43667355 43667373 AGTGGGATCACCATTTGTG 58 43667419 43668789 ATGGTTCCTCCTGAAACCT 58 NA Rattus norvegicus 81 Rn60_5_0814.26 ENSRNOG00000013609 ENSRNOT00000076568 1 1 1 81 5 77428491 77429245 CTCGATGGGAAATCAAGATCC 59 77428430 77428453 CACCTTTCCTATAGAACATTGCTC 60 NA Rattus norvegicus 81 Popdc2 ENSRNOG00000058752 ENSRNOT00000087892 3 1 1 87 11 64940754 64940773 TGGATTATAGGAGCGATGGG 59 64937331 64940706 CTTCTAGAAGACAGGATCCGG 60 NA InUTR Rattus norvegicus 81 Ggh ENSRNOG00000007351 ENSRNOT00000009758 2 1 1 80 5 34044366 34044385 GATTCTACATTGCTGCGTCC 60 34044426 34046664 CATTAAGGTCGAGCCTTATGG 59 NA Rattus norvegicus 81 Rftn2 ENSRNOG00000015594 ENSRNOT00000020910 3 1 1 81 9 61796153 61796171 CTTGTGATAGAGGAGTGCC 57 61791837 61796111 CAGCATTAACCTTGTCTATGAG 57 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909,ENSRNOT00000004921 2 2 2 80 X 104790079 104790667 GCTCGAAGGAAATAGAGCTG 59 104790018 104790037 CTGTTCTGTAAGCAAAGCGA 59 NA Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 2 2 2 80 3 165520830 165522731 AGGCAACCTGAAGGTACAC 60 165520768 165520786 TTCTCTATGGCCAGCTTCC 59 NA Rattus norvegicus 81 Rn60_5_0814.3 ENSRNOG00000030866 ENSRNOT00000047961 1 1 1 80 5 77551716 77551737 TGACAGATATGTCACGTTTCAC 59 77551312 77551677 CTTTGTTCTGCCATAGAGCAC 60 NA Rattus norvegicus 81 RT1-M1-5 ENSRNOG00000028035 ENSRNOT00000038725 1 1 1 80 20 2356545 2356826 TACAGCATGACTGTTATCACAC 59 2356867 2356885 CGAATCCGTGACTGAAGTG 59 NA Rattus norvegicus 81 RT1-M1-5 ENSRNOG00000028035 ENSRNOT00000038725 2 1 1 86 20 2356546 2356826 ACAGCATGACTGTTATCACAC 59 2356872 2356892 AATTCTACGAATCCGTGACTG 58 NA Rattus norvegicus 81 Psca ENSRNOG00000061376 ENSRNOT00000081571 2 1 1 82 7 116091459 116091704 TTTACATCTCGTGTCCGGAC 60 116091749 116091767 TTCTCCGTGTCATCCTCAC 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 3 2 2 81 10 29177341 29177359 GAGACTTGCAGAGGGTCTC 60 29177402 29179211 ACATTGTCATATGCTACCAGC 59 NA Rattus norvegicus 81 LOC691368 ENSRNOG00000048301 ENSRNOT00000074883 2 1 1 60 3 102510628 102510649 GTGTCTTCCAGATATTTGTCCT 58 102510667 102510688 GCTACCAACAATACCATCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Greb1 ENSRNOG00000024651 ENSRNOT00000032417 2 1 1 80 6 41950081 41951415 CAAGAGTGAAGACAGAGGGA 59 41950020 41950040 TTAGACAGTCTCATACGTGCC 60 NA Rattus norvegicus 81 Rn60_7_1409.3 ENSRNOG00000046625 ENSRNOT00000074411 3 1 1 60 7 143052156 143052174 CAAGCTGAACAACCTTGAC 57 143052114 143052137 GTAGTTGGGAACTTCCTTATAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drap1 ENSRNOG00000020527 ENSRNOT00000038138 2 1 1 80 1 220805751 220805770 CTCTGTTGAAGAAGGCTTGC 60 220805411 220805708 CAATGCACTGCTTCAGGTG 60 NA Rattus norvegicus 81 Bet1l ENSRNOG00000013165 ENSRNOT00000017684 2 1 1 84 1 213604491 213604511 TGTGGAGGAGATTCTAGACAG 58 213604203 213604445 CAAAGCCAGCGATTTAAGC 58 NA Rattus norvegicus 81 Boc ENSRNOG00000002041 ENSRNOT00000002790 2 1 1 80 11 61122536 61139615 TGACACTAGCCAATCTCCAG 59 61139658 61139676 CAATGACAGCTGTGTTCCC 59 NA Rattus norvegicus 81 AABR07058366.1 ENSRNOG00000025046 ENSRNOT00000035216 2 1 1 85 7 112057227 112057245 AGTTGAGGTCAAGGAAGGG 59 112057293 112058126 TATTGTTCCAGACAGGGCTG 60 NA Rattus norvegicus 81 Defb41 ENSRNOG00000038760 ENSRNOT00000059213 2 1 1 82 15 46179832 46182132 ATGATGCCGAGAGGAAAGG 60 46182176 46182196 CACGATACGTCTTTGCATACC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 3 3 3 80 20 2205231 2205626 ATAAGACAGTAAGCGTCACC 58 2205170 2205188 AGGTAATGCACTTCCAGTC 57 NA Rattus norvegicus 81 Spic ENSRNOG00000005720 ENSRNOT00000064241 1 1 1 80 7 29228711 29228732 AGAGGCAATTCTAACTACTGTG 58 29228121 29228673 AGAACCATTTGTTACACCTCTC 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 3 2 2 81 7 104528959 104529553 GAGATTAGAAGCAGCATTAAGAGG 60 104528901 104528919 CTCTCGCTCTAGATGCTGG 60 NA Rattus norvegicus 81 Zswim4 ENSRNOG00000007582 ENSRNOT00000010050 2 1 1 86 19 25327763 25329273 GCTGCCAAAGGAGATACCA 60 25327695 25327714 CAACTTGAAGAGCAGAGCTG 59 NA Rattus norvegicus 81 Cul3 ENSRNOG00000015633 ENSRNOT00000021528 2 1 1 80 9 86069713 86069734 CATCTTCGGCAAACTTTATTGG 59 86069096 86069675 AGCATTTCTTATTGCTCCTCTG 59 NA Rattus norvegicus 81 Hmx1 ENSRNOG00000009154 ENSRNOT00000012304 1 1 1 273 14 80541696 80543980 TCTGAGTCCTGACACAAGC 59 80541441 80541459 ATCGAAAGTGGACTCGAGC 60 NA DesignRelaxed Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 1 1 1 60 10 104036726 104036834 GGAGACTGAGAGCCAAGAC 60 104036858 104036876 ATAAGCGAAGTTGGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0538.1 ENSRNOG00000050211 ENSRNOT00000071777 1 1 1 60 15 49997531 49997551 CCTGTTTGTTCCTTTGATCCA 59 49997491 49997510 CCATTTCTGAGTTGACACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 1 1 1 60 4 118160263 118161078 AGAATATCCGGAAGATGCAGG 60 118161100 118161118 TTGTCTTCACAGCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Med31 ENSRNOG00000014618 ENSRNOT00000019919 1 1 1 80 10 58781343 58782960 CCAAATATCTAAAGTACCCTCAGTG 59 58781287 58781305 CATTCACCAGCTCCTTTCG 59 NA Rattus norvegicus 81 Olr1302 ENSRNOG00000039244 ENSRNOT00000060101 3 1 1 60 8 43192114 43192133 TTCATGTACCTTCAGCCCTC 60 43192073 43192092 ACACAGAAGACACTTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgap1 ENSRNOG00000013388 ENSRNOT00000017967 3 1 1 80 9 61074387 61075373 GTGTTTAAGGTTGTTCATCTGC 59 61070880 61070898 TCTTCTGGAGTGTTTGGGA 58 NA Rattus norvegicus 81 Actn3 ENSRNOG00000019745 ENSRNOT00000026812 1 1 1 80 1 220131209 220131227 CCAATGTCAACAAAGCCCT 59 220130846 220131167 CGTCAACAATTTCTTCAGCAC 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 1 2 2 80 8 71191712 71191731 ACTGATAGCAACACCAAACC 59 71191774 71192198 ATCAGGTCATAAGGGTCCC 58 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000050332 ENSRNOT00000072723 2 1 1 80 17 57508112 57511994 CTAAGACTCGAGGGAGAAGC 59 57508051 57508069 CTGGGTTAGGAAGGAAGCA 59 NA Rattus norvegicus 81 Mrpl38 ENSRNOG00000008256 ENSRNOT00000011328 1 1 1 86 10 104685045 104685177 CATCAACTTGGACGGACAC 59 104683295 104683313 TCAGCTACCCTATTGCTGG 59 NA Rattus norvegicus 81 Atp8b2 ENSRNOG00000020822 ENSRNOT00000028246 3 1 1 80 2 189291232 189291250 CAAGAACTTTGCGTTCACC 58 189290376 189291189 TACTGGTCATAAACGGTCTG 57 NA Rattus norvegicus 81 Nlk ENSRNOG00000008704 ENSRNOT00000011726 2 1 1 80 10 65854887 65857828 TTCAGCAGTTGGATTTGATCAC 60 65854828 65854846 CCTTAGCACCTTCACAAGC 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081091,ENSRNOT00000081695,ENSRNOT00000091967 2 4 7 110 20 2515882 2515900 CTCTGTGAAGAGGACGCTC 60 2517087 2517105 CAGGTCTGTACTGTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081304 2 1 7 60 20 2516060 2516080 GACCATCTAAGACTACAGGAC 57 2516102 2516120 TACTTAATGCACCCTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC129162.1 ENSRNOG00000014180 ENSRNOT00000019177 2 1 1 80 9 15310120 15310140 TATCAGCCAAGCTTCAAACTG 59 15310181 15310833 CAGTAGCGTTCATCACTGTC 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002728 2 1 3 80 14 22806854 22808545 AGTATTAGGAAGACCCACTACAC 59 22808585 22808603 TCCAAATCCCAGTAGGTCC 58 NA Rattus norvegicus 81 Glt6d1 ENSRNOG00000027900 ENSRNOT00000034538 2 1 1 80 3 3256940 3256964 GTCCTGGAGAAATATTACCATAAGC 60 3256491 3256903 GTACTGGCCATTGAAACTGC 60 NA Rattus norvegicus 81 Mtf1 ENSRNOG00000050240 ENSRNOT00000072841 3 1 1 80 5 142351673 142351691 AGCAAGTACTTCACCACAC 58 142351734 142354686 ATGATCACATCGAAATGGCT 58 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891,ENSRNOT00000020003 3 2 2 80 19 37201403 37201424 CCCTCATAAACAAGTTCCATCC 59 37201464 37203419 GCATCAAACAGGATGTCCAC 60 NA Rattus norvegicus 81 Serf1 ENSRNOG00000017945 ENSRNOT00000024291 2 1 1 80 2 30347042 30347061 ACCCAGGAAATTAGCAAAGG 58 30347102 30351858 CATGATCTCTGAATCCCTCTG 58 NA Rattus norvegicus 81 Gnat3 ENSRNOG00000005268 ENSRNOT00000007032 3 1 1 80 4 13877946 13877966 CAAAGAACTGGAGAAGAAGCT 58 13860891 13877905 TCACCTGCTCCTAATAGCAG 59 NA Rattus norvegicus 81 Hjurp ENSRNOG00000022911 ENSRNOT00000051065 1 1 1 80 9 95359457 95359478 GCTGATAAAGGAAGAAGACGAG 59 95355161 95356725 CTGTCGGAATCACCTCCTG 60 NA Rattus norvegicus 81 Prr22 ENSRNOG00000047295 ENSRNOT00000075201 3 1 1 170 9 10288672 10288775 CACTGTAGCCAATGCTAACC 59 10288096 10288115 ACCTTGTACAGGGATGACTG 59 NA Rattus norvegicus 81 Rn60_X_0641.5 ENSRNOG00000051055 ENSRNOT00000076163 1 1 1 60 X 63431752 63431773 TCATTAAGAAGGAAGGTTTGGG 58 63431793 63431812 TCCAGAGTTGCTGTAAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0641.2 ENSRNOG00000051315 ENSRNOT00000075921 2 1 1 60 X 63434329 63434348 GGCGTCATTGTAAACAAGCA 60 63434176 63434194 TGCACATTGATCCTCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0641.2 ENSRNOG00000051315 ENSRNOT00000075921 3 1 1 60 X 63434329 63434347 GCGTCATTGTAAACAAGCA 57 63434175 63434194 CTGCACATTGATCCTCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 1 2 8 112 13 68703050 68707607 GATGACCCAGATTATGATGCA 58 68707681 68707699 GGCTTTAATGGTGGTTCCA 58 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 1 2 2 80 7 30318016 30319059 CCTTCTGAACAAGAGCCCA 60 30317954 30317975 GTACTCAGGATTTGGAAGACAC 59 NA Rattus norvegicus 81 LOC100912852 ENSRNOG00000047003 ENSRNOT00000071620 3 1 1 141 9 12420447 12420932 ACAGTTCCTACCGCATCAG 60 12421036 12421055 CTCTTTGTCTCCACAGAGGA 59 NA Rattus norvegicus 81 Doxl2 ENSRNOG00000032432 ENSRNOT00000043790 1 1 1 90 4 78621966 78622234 ACGATCAGGATTTGGTAGC 57 78622288 78622306 AAGTTCCTAGATGAGGCCA 58 NA Rattus norvegicus 81 Zfp667 ENSRNOG00000033906 ENSRNOT00000063956 1 1 1 80 1 71283060 71283079 TTGTTGGAGAAAGGGAAAGC 59 71273093 71283021 CTCATCCTTAGACCCTAATTCAG 58 NA Rattus norvegicus 81 Pex10 ENSRNOG00000024012 ENSRNOT00000036819 2 1 1 83 5 172472106 172473134 AGGGATCACTTATCTCCGC 59 172473181 172473199 GAGATGAGTCCCAGCAGTC 60 NA Rattus norvegicus 81 Pth ENSRNOG00000014318 ENSRNOT00000019199 2 1 1 62 1 178216458 178216476 TTTGTCTCCTTACCCAGGC 59 178216303 178216322 GCTGTATTTCACTGACAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Pofut1 ENSRNOG00000010104 ENSRNOT00000013730 1 1 1 80 3 148728951 148729981 CCCATGAAGGAAGGAAATCC 58 148730024 148730042 GCCTGTGAACAACTCTGAC 59 NA Rattus norvegicus 81 Fkbp5 ENSRNOG00000022523 ENSRNOT00000033119 1 1 1 80 20 7982856 7986599 ACGGTGTACTTCAAGGGAG 59 7982794 7982812 GTACTCCATCTCCAGCCAG 59 NA Rattus norvegicus 81 Fkbp5 ENSRNOG00000022523 ENSRNOT00000033119 2 1 1 80 20 7989646 7994834 TGTATCTTGGACCACAATATGG 58 7989587 7989607 CATACATAAGCTCAGCATTGG 57 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000088988,ENSRNOT00000079360,ENSRNOT00000049357 3 3 3 80 18 56444587 56444605 TGCTCTGTGATGTCTCTGG 59 56444649 56444783 CCTCATCACACCTATCGGT 59 NA Rattus norvegicus 81 Adamdec1 ENSRNOG00000030724 ENSRNOT00000028974 1 1 1 80 15 49491181 49491199 AACCAACATGTGGAAACCG 59 49488009 49491140 AGCAAAGATTGGTACATTCCTC 59 NA Rattus norvegicus 81 Ebi3 ENSRNOG00000050509 ENSRNOT00000072031 3 1 1 111 9 11111784 11113300 AACGAATCATCAAGCCCGA 60 11111691 11111709 GAGAAGATGTCCGGGAAGG 60 NA Rattus norvegicus 81 Lkaaear1 ENSRNOG00000024815 ENSRNOT00000034209 3 1 1 100 3 177205683 177205805 TATACACAGGACTGGAGCA 57 177205601 177205619 TTCTTACGCTTCTCACCAG 57 NA Rattus norvegicus 81 Pla2g2d ENSRNOG00000016826 ENSRNOT00000022579 3 1 1 86 5 157226305 157226323 CCACCTGAAGATCGATGGA 59 157226373 157227228 CCTTGGTCAGAGCATTGGA 60 NA Rattus norvegicus 81 LOC680693 ENSRNOG00000036648 ENSRNOT00000068604 2 1 1 81 1 212316645 212316663 GACTTGCACAGCTACATCC 59 212315821 212316603 TTCGAAAGACTTTCCTGTTGAG 59 NA Rattus norvegicus 81 LOC680693 ENSRNOG00000036648 ENSRNOT00000068604 3 1 1 84 1 212316651 212316669 CTGGTAGACTTGCACAGCT 60 212315824 212316607 GAAAGACTTTCCTGTTGAGAAGG 60 NA Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000086431 2 1 2 81 18 44716373 44716394 GACTCTATCCAGACACATTGAC 58 44716434 44778261 TAAAGACATCTGTAGCCACCA 59 NA InUTR Rattus norvegicus 81 LOC100359431 ENSRNOG00000038276 ENSRNOT00000058263 3 1 1 60 1 77721466 77721484 AAGCTCTGCACATTGAACC 59 77721424 77721442 TGTGACCTCGTCACATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkn1 ENSRNOG00000004131 ENSRNOT00000005770 2 1 1 80 19 24806714 24806821 TCACTTTGGAAAGGTGCTG 58 24806652 24806671 ATGTCACCTTTCTTCAAGGC 59 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310,ENSRNOT00000005905 2 2 2 81 6 48756672 48756690 CACGTAACTGGGCTTTACC 59 48756735 48760646 TGGCAAGAATTTCTGGAGG 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000084632 2 3 5 116 X 63806052 63806223 ATCAAGCGCTCAGAAATGC 59 63805805 63805823 TTCCTTGAGCTGGATTCCA 59 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076938,ENSRNOT00000009870,ENSRNOT00000084632 1 3 5 60 X 63803806 63803824 TTGAGTTTGAGCTGCTGAC 58 63803764 63803782 ATCCTGGACCAAGGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtr2 ENSRNOG00000017102 ENSRNOT00000022952 3 1 1 60 19 41429412 41429431 GGTAGCAAATAGCCTGAACC 59 41429371 41429394 GTCCGTAATCATCCTAAGATTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pax1 ENSRNOG00000024882 ENSRNOT00000067983 1 1 1 86 3 141583524 141583919 ATATACCCAGTCGGCTTCC 59 141583969 141583987 TATACTCCGTGCTGGTTGG 59 NA Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000076786 1 1 2 82 2 30666586 30666605 CACTAGGCAAAGAACTTGCA 59 30666650 30667400 ATCCGGTGATCAGACTTCC 59 NA InUTR Rattus norvegicus 81 Fzd9 ENSRNOG00000001452 ENSRNOT00000001973 3 1 1 60 12 24475761 24475780 ATCTTCATGTCCTTGGTGGT 59 24475801 24475821 AAGTCTTGGAACTCCATACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C5ar2 ENSRNOG00000049028 ENSRNOT00000071576 1 1 1 80 1 78167963 78180114 CGGAAGAGAAGGTGTCTGG 60 78167901 78167925 ACTGTTCCTGATCATACTCATACTC 60 NA InUTR Rattus norvegicus 81 Ms4a6bl ENSRNOG00000050395 ENSRNOT00000074127 2 1 1 80 1 227246038 227248815 AATCTTTGGTAGATGGCAGC 58 227248855 227248876 TGACAGAGATGATAATGATGCC 58 NA Rattus norvegicus 81 Olr246 ENSRNOG00000050375 ENSRNOT00000050651 3 1 1 60 1 172265316 172265334 ATTCCCATGTTGAACCCTC 57 172265357 172265376 TCATAGCCTCCTTTACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911631 ENSRNOG00000025247 ENSRNOT00000034771 3 1 1 60 1 220097534 220097553 CACTGATCTTGGCTTCAGAG 58 220097575 220097594 AGATCCTCAGCCACTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr399 ENSRNOG00000049538 ENSRNOT00000075496 3 1 1 60 3 15823988 15824006 GGGCTATACCTAGTTCCCT 57 15824029 15824048 TCACAGACACAATGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 1 2 2 80 13 44504938 44504959 AAATGCACCCAGTTAGTAAGAG 59 44507346 44508911 CGTAAGATGCAAACTGTTGG 58 NA Rattus norvegicus 81 Gfod2 ENSRNOG00000017953 ENSRNOT00000024197 1 1 1 80 19 37695094 37695114 CAAGATGTAGACCTGGTTTGC 59 37684259 37695053 CTTCCCAATTCCTAGAGCCT 59 NA Rattus norvegicus 81 Atox1 ENSRNOG00000013118 ENSRNOT00000017588 2 1 1 80 10 40798825 40798843 TCTCTGTGGACATGACCTG 59 40794222 40798781 TGTTGAACTCCACTCCTCC 59 NA Rattus norvegicus 81 Vom2r59 ENSRNOG00000045674 ENSRNOT00000042692 1 1 1 94 12 4004149 4019987 TTACAGAGACTCCCAGGTC 58 4020044 4020063 GCAGTCAAAGCAACATATCC 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084724 1 1 11 60 6 99033053 99033074 GATCAAAGCCATCCTGTTATCC 59 99033093 99033113 CTTGAGATGTTCTTCAGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524,ENSRNOT00000044095 3 2 2 80 13 34250286 34250305 TAGAACAAACTGCTCGAGAG 57 34249224 34250243 ACCTCTTTGGAATGTCCTG 57 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299,ENSRNOT00000012095 2 3 3 84 13 52631872 52631890 TGAGAAGGTGCGTTACCTC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Rn60_5_0814.18 ENSRNOG00000051035 ENSRNOT00000076876 2 1 1 60 5 77778064 77778084 AGAAGAGTGGTGTTCTTCAGG 60 77778024 77778044 GAGTCTGTGCATACTACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex30 ENSRNOG00000011658 ENSRNOT00000015600 2 1 1 82 9 50868151 50868170 TTCGAGCGTGTTAGTTAGCT 60 50867701 50868106 AAACCCAATTCAGCGAACG 60 NA InUTR Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 2 2 2 81 1 185478309 185479015 GACCCAAGATCATCAAGTCCA 60 185479056 185479076 GGAACATTAAGGTTCCTCCGA 60 NA Rattus norvegicus 81 Olr1404 ENSRNOG00000003668 ENSRNOT00000004865 1 1 1 60 10 36466722 36466741 GACTCACCTTCTGTTCTCAC 58 36466762 36466782 AGGATAGGGTATGGATCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1404 ENSRNOG00000003668 ENSRNOT00000004865 3 1 1 60 10 36466712 36466730 CTCATGGTTCGACTCACCT 59 36466753 36466772 ATGGATCACAGAAGAAGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311318 ENSRNOG00000038008 ENSRNOT00000057820 3 1 1 82 2 150062662 150080692 CTCAACTGCTACAGAATGATCC 59 150080735 150080753 ATCAAGTGACTGTAGGCCT 58 NA Rattus norvegicus 81 Dkkl1 ENSRNOG00000020686 ENSRNOT00000028082 3 1 1 80 1 101208973 101208992 CATCAGGAACAGAACCAGGA 60 101208787 101208935 GTTGTCAGTCATCTTGTCTATCTG 59 NA Rattus norvegicus 81 Olr825 ENSRNOG00000048952 ENSRNOT00000050694 2 1 1 60 4 148544961 148544980 GAATGGCTAATGACAGAGGA 57 148545003 148545021 CCTCAAGGATGAACTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 2 2 2 106 9 14501676 14501694 ATACCTCCTTGCTGGATGC 60 14500324 14501609 GGTGTAGAGACTGAAGTGAGAG 60 NA Rattus norvegicus 81 Atp5g1 ENSRNOG00000007235 ENSRNOT00000009815 3 1 1 81 10 83896994 83897941 CTCATTTCTCCAGTTCTGATCC 59 83896934 83896952 CCTCTGGTCTACTCAGGAG 58 NA Rattus norvegicus 81 Fbn2 ENSRNOG00000043219 ENSRNOT00000066548 1 1 1 80 18 53130266 53131981 GAGGACTGCATAGATATTAACGAG 59 53130209 53130228 GGTTCCGATCATGTTCACAC 59 NA Rattus norvegicus 81 Aimp1 ENSRNOG00000011384 ENSRNOT00000015213 1 1 1 80 2 237740503 237742409 ATTCATAATGGAGTGAAGCAGG 59 237740444 237740463 AGTCACACTTTCAGAAACGG 59 NA Rattus norvegicus 81 Lyzl6 ENSRNOG00000003501 ENSRNOT00000004650 2 1 1 80 10 91696177 91697240 CTGTGAAGAACTACTGAATCCC 59 91696118 91696136 TTCATCCCTCCAGATCCAG 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914 2 3 6 147 14 44525065 44525085 GTAGAGCTGAGTCTTCTTGGA 59 44525619 44526411 TCTTGTAACGGAAGCCCAG 60 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809,ENSRNOT00000003739,ENSRNOT00000083655 3 3 3 80 X 75164511 75166630 CTGAAGAGACTATTCTTGGTGC 59 75164452 75164472 CTGTTGACAATCTATGTGCGA 59 NA Rattus norvegicus 81 Dcaf15 ENSRNOG00000006551 ENSRNOT00000008786 2 1 1 80 19 25214177 25214198 CTACATCAATTACACCAAGCTG 58 25214032 25214138 TTGTCATCCTCAAACTCATCC 58 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 2 2 2 80 19 49993214 49994008 AGACCATGGCAGAGATACTG 59 49994050 49994069 TGGAGATGATCTGTAGCTGG 59 NA Rattus norvegicus 81 Dpcd ENSRNOG00000017241 ENSRNOT00000023278 1 1 1 80 1 265303947 265303965 TGGTGCACTATTTGTTCCC 58 265304007 265311931 ACTTTCTCACAAGGAGTTCAC 58 NA Rattus norvegicus 81 Syn3 ENSRNOG00000026866 ENSRNOT00000037918 3 1 1 80 7 23783244 23783262 GGAGGCCTTTATTGACTCC 58 23783305 23790161 ATGGAGGTTCTCATGTATGC 58 NA Rattus norvegicus 81 Epha1 ENSRNOG00000017525 ENSRNOT00000024037 2 1 1 80 4 71752054 71752073 CAAGGTATCTGACTTTGGCC 59 71751867 71752012 ATAGGGATCTTTCCTCCCTG 58 NA Rattus norvegicus 81 Prrc1 ENSRNOG00000016433 ENSRNOT00000022017 2 1 1 80 18 52441146 52441166 TGGATAAGACCAAGCATTCTG 58 52441206 52443478 CGCCTCCAGATTTGATATACG 59 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000003343,ENSRNOT00000055872 3 2 2 95 10 34278137 34283913 TGGATCTGATCTTCCTTGGT 58 34283971 34283989 CTCCATGGCTAACTGTTGG 58 NA InUTR Rattus norvegicus 81 Mfi2 ENSRNOG00000001739 ENSRNOT00000002373 3 1 1 80 11 72143115 72143932 GGAGCTGTATGCTGAGGAG 60 72143053 72143072 GTGAAGGAGTAGGAGCTGTC 60 NA Rattus norvegicus 81 Rn60_4_0553.2 ENSRNOG00000007658 ENSRNOT00000010055 2 1 1 60 4 55539612 55539631 AAGTCCACTGAACTGATTCG 58 55539654 55539672 TCTGAGCAATTTCTCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc53 ENSRNOG00000005102 ENSRNOT00000006903 3 1 1 86 7 28762600 28763175 ATAGACCTGACCAAGGTGC 59 28763225 28763243 GAGAAACTGCACAGTGTGC 60 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718,ENSRNOT00000091144 2 2 2 80 5 99178279 99179098 AAAGAATTCCTCAGGTGCCT 59 99179139 99179159 ATCCAAGTCTGACTGTGAGAG 59 NA Rattus norvegicus 81 Svs1 ENSRNOG00000008714 ENSRNOT00000011588 1 1 1 83 4 78643473 78643491 AACCAGAACCATCACTGGG 60 78643537 78643814 CACCAAGTCCTCATCTTCGA 60 NA Rattus norvegicus 81 Hsd17b2 ENSRNOG00000013982 ENSRNOT00000018795 2 1 1 80 19 50289485 50299007 ACAAGACAAAGGACTGTGG 58 50299051 50299069 GTCATGGGAATGAGTTCCC 58 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 1 2 2 80 15 10463899 10463918 TTTGGGTTATGGACTCTCAG 57 10463961 10464983 GCCATGCATCTTAAAGCAC 58 NA Rattus norvegicus 81 Ehbp1 ENSRNOG00000008917 ENSRNOT00000012131 1 1 1 80 14 106872710 106872728 CTGGATGAACTAGTGGCCC 60 106872442 106872666 TTCTTCAGCCTGCTTCTCC 60 NA Rattus norvegicus 81 Trap1a ENSRNOG00000037610 ENSRNOT00000057044 3 1 1 81 X 110512347 110512366 AATCAGAAGATGAGATGGGC 58 110512406 110516799 CCTGGAGAATATGAATAGGTACC 58 NA Rattus norvegicus 81 Dlx3 ENSRNOG00000004278 ENSRNOT00000005797 3 1 1 137 10 82938359 82938378 GTTCAATCTCAATGGGCTCG 59 82938478 82939540 TCCTCTTTCACCGACACTG 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000047561 ENSRNOT00000073975 2 1 1 60 4 170812423 170812442 ATCCAAAGTTACGAGAAGCA 57 170812382 170812402 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1249 ENSRNOG00000049611 ENSRNOT00000072284 3 1 1 60 4 1602422 1602441 TATGTACCTAAAGCCCTCCT 57 1602462 1602482 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstt4 ENSRNOG00000038300 ENSRNOT00000058314 2 1 1 82 20 13783635 13783654 ACAAGTTGTTCATCACTGGG 58 13783699 13784531 GTTAGTTCCCATTGGCTGC 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 1 2 2 80 5 139816389 139816407 CCAGCTGGAGGTAGAAGTG 60 139816450 139816729 TTGATATAGGTGGCTGGGAG 59 NA Rattus norvegicus 81 Myom3 ENSRNOG00000032994 ENSRNOT00000044969 1 1 1 80 5 154135853 154135871 CATCTACTCCCGAGAAGCA 59 154135914 154137144 GGAACTGTGAACTTGGTGTC 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 3 7 7 81 15 5464589 5464609 AGATGACCAACTGGATAAGTG 58 5464085 5464546 AAGTTTCTGATGCGGTAGG 58 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000087370 3 1 3 74 7 143059773 143059791 CACTAGACACGCTGAAGGA 59 143060089 143060107 CCTCACTGGTCCTTTAGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384,ENSRNOT00000072624 1 2 2 80 4 126617622 126617640 CCCTCTATCCAAGCAACCA 59 126617465 126617578 AGGAATCTCCTTTCCCGTC 59 NA Rattus norvegicus 81 RGD1562037 ENSRNOG00000027938 ENSRNOT00000033359 1 1 1 120 17 55674390 55674408 GTAAAGATCAGGCCTGGCA 60 55670555 55674307 TCATAGGAATCTGCACACCA 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 3 2 2 80 1 78104235 78104253 ACTATGATGCCTTTGCTCC 58 78102137 78104192 TACTCTTCATCTGAAGCACC 57 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 1 2 2 77 1 173730216 173730234 CTTTCGAGATGGTGATGCG 59 173728592 173730176 ATCTCTGATTGCAGAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 B3gnt6 ENSRNOG00000014471 ENSRNOT00000046850 2 1 1 61 1 163148917 163148935 TCTCCTCTCGCAAAGACAC 60 163145436 163145454 TCTTGGGAGTCTTGGACCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps15al1 ENSRNOG00000032866 ENSRNOT00000051114 1 1 1 60 12 11302618 11302638 AAGAGCATCAACAAAGCAGAC 60 11302578 11302596 CGATGACTTTGGAACACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043,ENSRNOT00000015840 2 2 2 80 5 169574714 169574823 TTCCACAAGATAGGAGTAGGT 58 169574654 169574673 GATGCCACTGTCATACTTCC 59 NA Rattus norvegicus 81 Glyctk ENSRNOG00000046307 ENSRNOT00000074595 2 1 1 80 8 114850740 114850759 CTTGTGCAGGGTGTTATCAG 59 114850473 114850697 CTTCAGCAGCATCTCTTGC 59 NA Rattus norvegicus 81 Igf2bp1 ENSRNOG00000006122 ENSRNOT00000008139 1 1 1 80 10 83792841 83792859 TGAACACCGAGAGTGAGAC 59 83791792 83792798 TTAGCTTCATGATGGCTTGC 59 NA Rattus norvegicus 81 RGD1306519 ENSRNOG00000024928 ENSRNOT00000055648 3 1 1 80 2 228653565 228654071 GACATCTCAAATGAGGTTTCCC 59 228653506 228653526 GCATAAAGCCATGTCTTCTCC 60 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528,ENSRNOT00000077797 3 2 3 80 3 8650292 8650311 TGAGCCTGTCATTGAAAGGA 59 8650354 8650453 CTCAGGAAATCCTGGCCTC 60 NA Rattus norvegicus 81 Tpo ENSRNOG00000004646 ENSRNOT00000006526 1 1 1 80 6 49062703 49074171 GCAACAACAGAGATCACCC 59 49062641 49062661 AACCATCTTCGTAGACAGGAG 59 NA Rattus norvegicus 81 Dedd ENSRNOG00000003779 ENSRNOT00000005147 1 1 1 80 13 89720459 89720962 AAAGCAGACATGTGACATCAG 59 89721003 89721022 GAGAAGACATTGCCTTGCAG 60 NA Rattus norvegicus 81 Isy1 ENSRNOG00000010021 ENSRNOT00000013571 2 1 1 80 4 119736798 119737788 GAGACGGCAGATCATTGGA 60 119729742 119729760 TCTCGGATTCGGAATTCCC 59 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441,ENSRNOT00000082652 1 2 2 80 X 112290941 112290962 TATGTGATGTCAACAATCCTCC 58 112291001 112296790 TGGAAGGTTTGACTAAGACAG 58 NA Rattus norvegicus 81 Nol10 ENSRNOG00000005344 ENSRNOT00000007169 3 1 1 80 6 42658845 42660858 AGGATGTCGATGTTCGTAGG 59 42660897 42660919 TCGACACCTTGATAGTAGTACAC 60 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123,ENSRNOT00000078991,ENSRNOT00000012622 3 3 3 80 4 99808038 99808059 CAAGTTTCATTCACTTGGAAGG 58 99807296 99807998 GCAAGTGAGGGTTCTATTCC 58 NA Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 3 2 2 103 8 111213731 111213749 TACCCACACGCTGTAATGG 60 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 Olr778 ENSRNOG00000004993 ENSRNOT00000006622 2 1 1 60 3 103111518 103111538 CAGAAAGCAGAAAGTCATCTC 57 103111478 103111498 AGCATGACTAAAGAAGACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amz2 ENSRNOG00000000246 ENSRNOT00000000263 2 1 1 80 10 97717967 97717987 CTAAATGTCTGCCCTATCTGC 59 97718029 97719797 CACCAGGGCTTTGTATCTC 58 NA Rattus norvegicus 81 Galnt10 ENSRNOG00000002488 ENSRNOT00000003447 1 1 1 80 10 43067464 43142697 AGGCGATACAGGAATTACAC 58 43142740 43142758 TGTTATGCCAGTCCTTCAG 57 NA Rattus norvegicus 81 Gucy2f ENSRNOG00000019086 ENSRNOT00000046804 1 1 1 80 X 113390915 113390933 GGTGGACCTTCTGAATGAC 58 113387421 113390875 CCAATGGTCTCTACCTTATAGAC 58 NA Rattus norvegicus 81 Olr331 ENSRNOG00000030201 ENSRNOT00000044115 3 1 1 60 1 229480373 229480394 AGCAATCTGTCCTTTATTGACC 59 229480415 229480433 TGGAAAGCATCTTTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zwint ENSRNOG00000048682 ENSRNOT00000074404 2 1 1 81 20 17090531 17090549 TGGAACCTGTAGGATTGCC 59 17090328 17090488 TCTTTCTTCCGAGAGTTCCTC 59 NA Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 1 2 2 80 11 61670005 61672016 TAATTACAGCTCAGCTCTATCC 57 61672057 61672075 ATGAGGAAGATGTAGGCCA 58 NA Rattus norvegicus 81 Slco4a1 ENSRNOG00000053430 ENSRNOT00000080656 2 1 1 80 3 175847798 175848758 CCATCTATATTGCCATCTTCTACAC 59 175848796 175848814 CATTTAGCATGGCTCCTCC 58 NA Rattus norvegicus 81 Hmgn5 ENSRNOG00000049192 ENSRNOT00000071650 1 1 1 87 X 80140243 80140511 ACTGTCTGCTATGCCTGTG 60 80138042 80138061 CACGACATTTGTGGTCTTCG 60 NA Rattus norvegicus 81 Slc25a33 ENSRNOG00000016949 ENSRNOT00000022799 2 1 1 80 5 166710509 166715350 CTACAGGTTCTGAAATCGATCC 59 166710450 166710469 AACTCCAACCAAGTTTGGAC 59 NA Rattus norvegicus 81 Olr774 ENSRNOG00000046079 ENSRNOT00000046265 3 1 1 60 3 102996193 102996216 GCTCTACATATTAAGCATGACTGG 60 102996156 102996174 AGGGTCAATGGTCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513,ENSRNOT00000076873 1 2 2 60 13 78900845 78900863 TTTCTCAGGATGCCTTCGG 60 78900887 78900905 CACCCACTACCACTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr773 ENSRNOG00000048326 ENSRNOT00000071260 3 1 1 60 3 102948526 102948546 GGTTGGACAAATTTCTTGCTG 59 102948567 102948586 ATGGCTGGATTTAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_1004.2 ENSRNOG00000060606 ENSRNOT00000082964 3 1 1 60 14 100173362 100173382 GACAGATACAACGAGATCCAC 58 100173404 100173422 CCACAGACTTAGGACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn3 ENSRNOG00000040188 ENSRNOT00000061847 2 1 1 80 3 2946790 2946808 ATAAGCAAGGTCTCACCCA 58 2946548 2946748 GCCGTACATCATAAATGTGAC 58 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 3 2 2 80 13 105045620 105047219 TATTGCTTTAGGAATGTGCAGG 59 105045561 105045580 CCATTTCCATCCAAGATCCC 58 NA Rattus norvegicus 81 LOC100911730 ENSRNOG00000046094 ENSRNOT00000072434 1 1 1 80 1 214448821 214448840 GTTGTTGTCATGGTGACTGG 60 214448880 214449190 GATGAAGTACAAGCGTAACAGG 60 NA Rattus norvegicus 81 March4 ENSRNOG00000016472 ENSRNOT00000022076 2 1 1 94 9 79802927 79807849 AATCCTCTACAGTGGCAGG 59 79802851 79802870 ATACTGGCGATGAGGAAGAG 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771,ENSRNOT00000048404 2 3 3 81 1 150503261 150503660 GAACTCCAGAGCTTTACTGTG 59 150503702 150503721 TTGGGTGACATCTGGTAGAG 59 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000059870 ENSRNOT00000010256 3 1 1 183 4 82214394 82214412 GCAACTTCAAGTTCGGACG 60 82212819 82212837 ATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100359546 ENSRNOG00000029847 ENSRNOT00000041537 1 1 1 60 3 104675316 104675336 CTCCTTCAAAGCCTAAGAAGG 58 104675276 104675298 TCTTTCCTCTTGGGTATCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep131 ENSRNOG00000004430 ENSRNOT00000005977 1 1 1 80 10 109255239 109255257 CATAACCACTACGCCTCCT 59 109254610 109255197 CACAATATTGTTGAGGGAGGG 59 NA Rattus norvegicus 81 Cep131 ENSRNOG00000004430 ENSRNOT00000005977 2 1 1 80 10 109255238 109255256 ATAACCACTACGCCTCCTC 59 109254609 109255196 TCACAATATTGTTGAGGGAGG 58 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 2 2 2 80 19 52080995 52081863 AGTTATCATTGGCAATGGTCC 59 52081905 52081923 GCTCCTGGTTTCACATAGG 58 NA Rattus norvegicus 81 Plscr5 ENSRNOG00000047917 ENSRNOT00000073400 1 1 1 80 8 99574378 99574399 GAGAGGTGATTACAGTGAACAG 59 99574436 99575403 CTTGGATTTCTAGCTCTTGTAGG 59 NA Rattus norvegicus 81 LOC685596 ENSRNOG00000032204 ENSRNOT00000046035 3 1 1 60 1 94718460 94718482 CCGGAAGTGGTATTATAATGCAG 60 94718501 94718520 TGTGTCATCTCGCATTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051564.1 ENSRNOG00000061576 ENSRNOT00000073316 2 1 1 60 3 17139825 17139843 CCTAGAATCTGGAGTCCCT 57 17139867 17139885 GAGGGTAAAGTCTGTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 3 2 2 80 7 35091077 35094603 CTAATGACACCAGATAAGGCTG 59 35094642 35094662 GAGATTCGCTAATGACGTGAC 59 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195,ENSRNOT00000088917 3 2 3 80 6 106105274 106105293 TGGAGAATGCATTTCTGTGG 59 106105336 106105925 TTTGAAACAAACTGCAGCC 58 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143,ENSRNOT00000086745 1 3 3 80 3 93690171 93690191 ACTGCTACTACAATGAAACCC 58 93688888 93690132 GAGTTAATGCTTCAAAGTCCTG 58 NA Rattus norvegicus 81 Gbx1 ENSRNOG00000013369 ENSRNOT00000017854 2 1 1 60 4 7175038 7175056 CTCCGCACTTCTCAGAGAC 60 7200041 7200059 TCTGAGCTGTACACCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866,ENSRNOT00000080774 1 2 2 103 12 16098096 16098434 CTACGACTGGTACAGGTGG 59 16098501 16098519 AGATACCCTTGGAGCTTCG 59 NA Rattus norvegicus 81 Pak2 ENSRNOG00000048597 ENSRNOT00000071060 2 1 1 80 11 72842813 72842834 ATGTCTTGAAGTTCTACGACTC 58 72842873 72843793 AAGGAAAGCCATCTTTCTCAG 58 NA Rattus norvegicus 81 Sae1 ENSRNOG00000015128 ENSRNOT00000020402 2 1 1 80 1 78286786 78286805 TACGCAATGACGTGTTTGAC 60 78281202 78286744 TCTCAGAGAAGCAGTACCTG 59 NA Rattus norvegicus 81 Spx ENSRNOG00000053700 ENSRNOT00000087378 2 1 1 97 4 176630207 176630225 CATGCTCTATCTGAAGGGC 58 176630962 176632349 GGTTTCGTCTTTCTGGAGG 58 NA Rattus norvegicus 81 Irf6 ENSRNOG00000005082 ENSRNOT00000007333 2 1 1 80 13 111878880 111879684 TCTGTCATTAACCCAGGATCC 59 111879723 111879744 ATCTTCCTCGTCATCTTCATCC 60 NA Rattus norvegicus 81 Magel2 ENSRNOG00000010158 ENSRNOT00000013483 2 1 1 60 1 123019020 123019038 CCCACACTTACATCATCGT 57 123019060 123019080 TAGGATGCCAGCAAATTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000092079 2 1 2 235 15 5306563 5306582 GTTCTGTTTCAGTGTCCAGC 60 5307860 5307878 ATGAACGGAGGACATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Upf1 ENSRNOG00000020134 ENSRNOT00000027268 1 1 1 80 16 20844325 20844511 CAGAATTGTCCCAGGACAG 58 20844554 20844573 GGTATGTGGAGTCTTGTGAG 58 NA Rattus norvegicus 81 Sparc ENSRNOG00000012840 ENSRNOT00000017486 1 1 1 80 10 40751209 40751858 GAGACAGGGTTACCTGTGG 59 40751147 40751165 CTCGACAGTTTCCTCTGCA 60 NA Rattus norvegicus 81 Olr251 ENSRNOG00000050593 ENSRNOT00000040363 1 1 1 60 1 172368705 172368723 CCCAAGTCCAGTTTCTCCA 59 172368663 172368683 TCACCAACAAGTAGAAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr9 ENSRNOG00000006311 ENSRNOT00000008269 2 1 1 80 8 132835319 132839700 GAATTCACAAGCCTTATTCCTG 58 132839738 132839759 CAAATTCATGTAGTCGTCTGTG 58 NA Rattus norvegicus 81 Ldhb ENSRNOG00000013000 ENSRNOT00000017965 2 1 1 80 4 176710721 176710744 TATTCCTCAGATCGTCAAGTACAG 60 176707985 176710688 GTGACATAGGTAAGAATATCCACTG 59 NA Rattus norvegicus 81 Xxylt1 ENSRNOG00000001729 ENSRNOT00000002356 2 1 1 80 11 73199013 73227550 CAAGTGCAAGGTCATCTTCC 59 73227593 73227611 AAGTACTTCTGCATGGCCT 59 NA Rattus norvegicus 81 LOC100361174 ENSRNOG00000048515 ENSRNOT00000068076 1 1 1 81 2 191866818 191869121 TTCTAAAGGCAATGGATGAAGG 59 191866758 191866778 TCCCAAATCTCATCAAAGGTC 58 NA Rattus norvegicus 81 Bend7 ENSRNOG00000022712 ENSRNOT00000032173 2 1 1 82 17 77486478 77496755 CCTCAGATCCAGAAGTGCA 59 77486414 77486438 GTAGTTTGACAATATAGAGTCCAGC 60 NA Rattus norvegicus 81 Smim1 ENSRNOG00000043193 ENSRNOT00000063779 1 1 1 86 5 171309497 171309763 TATAAGAGGATCTCCCAGAAGC 59 171309432 171309450 GATGATCCAGAAGAGGGCC 60 NA Rattus norvegicus 81 Marcksl1 ENSRNOG00000009113 ENSRNOT00000012663 1 1 1 60 5 147715469 147715487 AGAGAAATCGGAAGGAGGG 59 147715511 147715529 TGCTCTTCCTCTGTTGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uts2 ENSRNOG00000018393 ENSRNOT00000024798 2 1 1 80 5 168082344 168083906 AAGCTTGAGGAAGGCTCTC 59 168083948 168083968 TTACGTTGTTTCCTGGTTCTC 59 NA Rattus norvegicus 81 Lin37 ENSRNOG00000020929 ENSRNOT00000028413 2 1 1 80 1 89012573 89013991 AGAAATCAGAGATGGAGATGG 57 89012513 89012531 CCATGTGACTCTTCTCCAG 57 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 1 2 2 126 20 7296594 7298836 AATATCACAGCCGACCCTG 60 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Dcaf17 ENSRNOG00000009403 ENSRNOT00000031463 2 1 1 80 3 57667296 57667316 GACTGGATCTATTTCCACCCT 59 57667356 57669410 ACTCAGCTTCAAGACTTTGAC 59 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116,ENSRNOT00000051927 3 2 2 80 1 48334227 48335551 TATCCCTGATGATCTACAGTGG 59 48334168 48334187 ACCATTTCATAGGCCATGGT 60 NA Rattus norvegicus 81 Kif24 ENSRNOG00000012735 ENSRNOT00000035541 2 1 1 82 5 57797317 57797335 AGATAGCAAGCATGTGGTG 58 57792826 57797273 TTAAGATCACCTGTAGGAGGA 57 NA Rattus norvegicus 81 Lcn10 ENSRNOG00000028074 ENSRNOT00000028997 2 1 1 80 3 2897114 2897132 GTCTGCGAGAATTCCTGGA 60 2897176 2897669 CACAGGAATCGTCTTTCGG 59 NA Rattus norvegicus 81 Slc26a3 ENSRNOG00000006878 ENSRNOT00000009473 3 1 1 80 6 50737092 50737113 AGATAAAGGAATGGCTTCTCAG 58 50737153 50739192 CAAATGCTAAACCTTGCAGC 59 NA Rattus norvegicus 81 Hmgb1 ENSRNOG00000029813 ENSRNOT00000047163 1 1 1 80 12 7085863 7086028 AGAGGTGGAAGACCATGTC 59 7086069 7086090 CTCTTTCATAACGAGCCTTGTC 60 NA Rattus norvegicus 81 Hmgb1 ENSRNOG00000029813 ENSRNOT00000047163 3 1 1 85 12 7085863 7086028 AGAGGTGGAAGACCATGTC 59 7086074 7086095 CATTTCTCTTTCATAACGAGCC 58 NA Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000084243 3 1 2 103 16 21132426 21136897 CACTTAGAGAAGGCGGTCC 60 21136963 21136982 CACAGGTTATAGCTCACGGA 59 NA InUTR Rattus norvegicus 81 Olr1459 ENSRNOG00000050291 ENSRNOT00000052329 1 1 1 60 10 44789924 44789944 TTCTACTTGTTCCTCTCACCT 58 44789966 44789984 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C4bpa ENSRNOG00000004062 ENSRNOT00000005461 2 1 1 80 13 47359513 47361800 TGTGAGCTCAATAGTTGCA 57 47359451 47359469 ATCTTCCTTTCTTGGCCTG 57 NA Rattus norvegicus 81 Ccdc50 ENSRNOG00000001930 ENSRNOT00000002649 3 1 1 81 11 76783626 76783645 TTGCTCAGGAAATCCAGGAG 60 76771398 76783582 CGTGCTATGTCCTCATCCT 59 NA Rattus norvegicus 81 Mt1 ENSRNOG00000038047 ENSRNOT00000057898 2 1 1 87 17 78793393 78793411 CCAGATCTCGGAATGGACC 60 78793462 78793480 ATTTGCAGTTCTTGCAGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Nudt4 ENSRNOG00000009094 ENSRNOT00000012363 2 1 1 81 7 36648073 36648520 TGTATGAAGAGGCTGGAGTC 59 36646696 36646714 TATGTTCTGTGCTTCCGGT 59 NA Rattus norvegicus 81 LOC691418 ENSRNOG00000025980 ENSRNOT00000030754 3 1 1 60 3 110983002 110983023 CCCTTTCTTCTCCTTCAAAGTG 59 110983039 110983062 TATCTGTAGAACTTCTTCCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk2 ENSRNOG00000007821 ENSRNOT00000010283 3 1 1 108 7 61791950 61798684 CTACATCCCACACGATTGG 58 61791860 61791879 TTACTGTTGTCCTCGAACAG 58 NA InUTR Rattus norvegicus 81 Fcho1 ENSRNOG00000033912 ENSRNOT00000040464 1 1 1 80 16 20141276 20141748 TATCCTTTGACTCTGCCGA 58 20141214 20141235 CATAGAACTTTCTAGGCTCCTC 58 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 1 1 1 60 1 22431444 22431462 CCTGAGCAGAGATCTGCTC 60 22431400 22431420 CCTGACACAGGATCCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Gmeb1 ENSRNOG00000010910 ENSRNOT00000014506 2 1 1 80 5 150416386 150416408 AAGGAGATAGAAGAGCTTCTCAG 59 150411349 150416346 CAGAACAGCAGCATCTGTG 59 NA Rattus norvegicus 81 Gmeb1 ENSRNOG00000010910 ENSRNOT00000014506 3 1 1 80 5 150416384 150416405 GAGATAGAAGAGCTTCTCAGGG 60 150411346 150416344 GTTCAGAACAGCAGCATCTG 60 NA Rattus norvegicus 81 Trim47 ENSRNOG00000008215 ENSRNOT00000010887 3 1 1 80 10 104656952 104657278 CTCATCAAGAGTGCAGCTG 59 104656890 104656908 GAAACTCTGTAGGGAGGCT 58 NA Rattus norvegicus 81 Npas1 ENSRNOG00000015376 ENSRNOT00000020855 3 1 1 80 1 78429537 78429673 ACACATCCTACAGTCCTTGG 59 78429476 78429498 GACACTGTCTCTGAGATGTAGAG 60 NA Rattus norvegicus 81 Olr631 ENSRNOG00000032712 ENSRNOT00000050173 2 1 1 60 3 76718462 76718483 GACATTTGCTATACCTCCTGTG 59 76718423 76718443 TTCTCTTTACAAGCAGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddr2 ENSRNOG00000002881 ENSRNOT00000003901 2 1 1 80 13 88342696 88342715 CTTATCCCAGTCACTGACCA 59 88342250 88342653 TACCAAGCCATCTAGCCAG 59 NA Rattus norvegicus 81 Ddr2 ENSRNOG00000002881 ENSRNOT00000003901 3 1 1 80 13 88342696 88342714 TTATCCCAGTCACTGACCA 58 88342249 88342652 ATACCAAGCCATCTAGCCA 58 NA Rattus norvegicus 81 Acd ENSRNOG00000038973 ENSRNOT00000059577 3 1 1 80 19 37667680 37667701 GTGTCAGATGGAACTCATAGTG 59 37667462 37667639 GAACTCCTTCTCCTCCCAG 59 NA Rattus norvegicus 81 RGD1565512 ENSRNOG00000027392 ENSRNOT00000036178 2 1 1 80 3 3732873 3732891 GATCTCCAATGCGGAAGTG 59 3729460 3732831 ATAGACAGAAGCTGTCTGGAG 59 NA Rattus norvegicus 81 Gkn1 ENSRNOG00000008838 ENSRNOT00000012218 2 1 1 85 4 119144027 119144045 GACGTGAATACATTCGGGC 59 119143274 119143979 TGGTTTGGTCCTGGAATCTC 60 NA Rattus norvegicus 81 Ntn3 ENSRNOG00000006970 ENSRNOT00000009735 2 1 1 80 10 13578713 13578857 TTGTGTTAAGACTCCTGTCCC 60 13578537 13578555 GGTCTGCAATGTGACTCAC 59 NA Rattus norvegicus 81 Siglec8 ENSRNOG00000022640 ENSRNOT00000048947 3 1 1 80 1 99584731 99584749 GTGTATACCTGCCAAGCTC 58 99583703 99584689 TAAAGTTGCACTTCTCTGTGG 59 NA Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000066169,ENSRNOT00000009879 3 2 2 80 5 138246200 138246219 GAGTGGAGAAGGCTAAACAG 58 138246259 138250956 CTCTGTTGAGAGCATAGATCTC 58 NA Rattus norvegicus 81 AABR07040936.1 ENSRNOG00000050265 ENSRNOT00000072094 1 1 1 133 X 115208894 115208917 ACAGAAACGATTACTTGGCA 58 115209012 115209031 CTTCTTAAAGTCCTCTGCCA 57 NA Rattus norvegicus 81 AABR07040936.1 ENSRNOG00000050265 ENSRNOT00000072094 3 1 1 135 X 115208894 115208917 ACAGAAACGATTACTTGGCA 58 115209014 115209033 TCCTTCTTAAAGTCCTCTGC 57 NA Rattus norvegicus 81 AABR07040622.1 ENSRNOG00000003194 ENSRNOT00000004262 3 1 1 91 X 106518955 106518973 CTATGGCATTAGCCCACAG 58 106519027 106519047 TCACAAAGGTCTCTTCTGTG 58 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 2 3 3 80 18 60714906 60715420 ACTTTATGGTTCCAATGGTCCT 60 60715461 60715479 CATGTATGAGCTCTGGGCA 60 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 3 3 3 80 18 60714905 60715419 AACTTTATGGTTCCAATGGTCC 59 60715460 60715478 ATGTATGAGCTCTGGGCAG 59 NA Rattus norvegicus 81 Atp5b ENSRNOG00000002840 ENSRNOT00000003965 3 1 1 80 7 2507475 2509149 CAGTGCAGGCTATCTATGTG 58 2509192 2509210 TAGTAGCATCCAAATGGGC 57 NA Rattus norvegicus 81 Rhobtb2 ENSRNOG00000017373 ENSRNOT00000023876 2 1 1 80 15 51474134 51474154 GACCTGGATGATATGAAGCTC 58 51468819 51474092 TGTGTACTGCTCTGTGAGG 59 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509,ENSRNOT00000004716 2 2 2 80 13 92304489 92304509 AAACTGAAAGAGACCTATGCC 58 92304549 92306168 TAGCAACTTCTCCTCTATCCA 58 NA Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 3 2 2 80 3 176546370 176546390 AGCCAATATCTCAGATGTGGT 59 176542925 176546329 ATCTGGTTCTTCTCGTCCAC 60 NA Rattus norvegicus 81 Ptrhd1 ENSRNOG00000004059 ENSRNOT00000005402 2 1 1 76 6 28663811 28663829 ACACAGCAGCTTATCTCCG 60 28666339 28666357 CTTCAAGGTGGTCTCATCG 58 NA DesignNoJunction Rattus norvegicus 81 Itm2a ENSRNOG00000002365 ENSRNOT00000003265 2 1 1 80 X 78492525 78492760 GACTTTGAGAAGGGAATGACTG 59 78492466 78492485 CACAATGGAAGTGTTGAGGG 59 NA Rattus norvegicus 81 Olr588 ENSRNOG00000005793 ENSRNOT00000007603 3 1 1 60 3 75937379 75937400 CATTAATGAGTGGCTACTTTCC 57 75937418 75937439 GATGAAGAAACAGATGACCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 2 3 3 80 4 23117460 23117479 CCCTTGTGATTCCTATTCGT 57 23115919 23117420 TGTCTTTATTAGTTAGGGCCTG 58 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 1 2 2 80 7 35532158 35535146 AGAGGTACAGGTATGAGCG 58 35535190 35535208 GCTTCAGGTTAGCTGTCTC 58 NA Rattus norvegicus 81 Preb ENSRNOG00000007141 ENSRNOT00000009565 1 1 1 80 6 26785530 26785550 GTGCTTCAACCATGATAACAC 58 26785591 26785783 TCTAGGCTAGGTACCTTCCA 59 NA Rattus norvegicus 81 Nxt2 ENSRNOG00000019168 ENSRNOT00000025912 2 1 1 103 X 113514343 113515079 AGTTCATGAGCAAGCTACC 58 113515143 113515164 GGAAGTTCTGGTTAAAGAAGTG 57 NA Rattus norvegicus 81 Cbfb ENSRNOG00000014647 ENSRNOT00000019656 1 1 1 80 19 37156834 37156853 GGATAGAGACAGGTCTCACC 59 37156896 37168988 CTTGCTGTCTTCTTGCCAG 59 NA Rattus norvegicus 81 Pcnxl3 ENSRNOG00000020742 ENSRNOT00000064136 2 1 1 80 1 221040923 221041264 CTTCTTGCTGTACATGGTCC 59 221040862 221040882 GTAGCAAAGATGACAGCTACC 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923,ENSRNOT00000012640 3 2 2 80 7 143224894 143224912 GGTCAAGGCCCAGTATGAG 60 143223162 143224851 AGCTCCTCATACTTGGTCTG 59 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 2 2 2 80 6 55482108 55484780 AATTGTGTTTGTGGACCCT 58 55484824 55484842 GGTTCGTAAGCGTAGAGAC 58 NA Rattus norvegicus 81 LOC100912371 ENSRNOG00000049321 ENSRNOT00000071145 1 1 1 60 4 1730206 1730224 AATGGCTCTTTGGTGTTGG 59 1730246 1730266 TTTGGAGTTTAGGCTCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr139 ENSRNOG00000023863 ENSRNOT00000032796 2 1 1 82 1 188855293 188895129 GGTTACCAGCAAATATCTTGAC 58 188855232 188855253 CAGAAGATAGTTGTAGGAGGAC 58 NA Rattus norvegicus 81 Ltbp3 ENSRNOG00000020813 ENSRNOT00000028262 2 1 1 80 1 221111561 221111581 AATACCAATGGTTCCTACCGA 59 221111619 221113106 CTCATCTATATCTTGGCACTTCC 59 NA Rattus norvegicus 81 Rn60_14_1003.1 ENSRNOG00000052876 ENSRNOT00000078236 2 1 1 60 14 100260359 100260378 GCTTCATGTGCTGTCTTCTG 60 100260318 100260337 TTCTTGTAGCTCTCCAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 3 1 1 60 2 190073922 190073942 TCTACAGGGATGACTTCAGGA 60 190073962 190074145 TTATTCTGCACAAACTGAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mocs1 ENSRNOG00000011784 ENSRNOT00000067626 1 1 1 83 9 13500189 13500207 ATCACGTCCATGTCAGAGC 60 13497636 13500142 GAAGAGGCAGACCTTGAGG 60 NA Rattus norvegicus 81 Mocs1 ENSRNOG00000011784 ENSRNOT00000067626 3 1 1 88 9 13500194 13500212 GCTTCATCACGTCCATGTC 59 13497636 13500142 GAAGAGGCAGACCTTGAGG 60 NA Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 3 2 2 80 3 3820393 3820484 ATTCAGGACATCAACCAGC 58 3820331 3820351 ATTGGAAATCTTCTCCCAGTC 58 NA Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 3 2 2 80 15 18544167 18544435 AAATTGAAAGGCAAGGGACC 59 18544477 18544496 ATACAGCTGCAGCTTCTAGG 60 NA Rattus norvegicus 81 Tas2r106 ENSRNOG00000031185 ENSRNOT00000044029 3 1 1 60 4 165787585 165787605 CTAGGGAATGGGTTTATCCTG 58 165787545 165787563 TGGAGAACTTCTGCCTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk8 ENSRNOG00000039819 ENSRNOT00000061105 1 1 1 80 12 10497445 10499007 ACTATCAGCGTTCCAATCCA 59 10497384 10497402 AGTATCCCATGCTGCTCTG 59 NA Rattus norvegicus 81 Txndc11 ENSRNOG00000002452 ENSRNOT00000003332 1 1 1 80 10 4592458 4605024 TCCAACTATGAGCCTGGAG 59 4605066 4605086 GGTGAAGAAGGTCAAGTATCC 58 NA Rattus norvegicus 81 Pou6f1 ENSRNOG00000004595 ENSRNOT00000006095 2 1 1 113 7 142205679 142205697 TTAAGATCCGGAGGCTCTC 58 142204893 142205603 CTAACTTCTCGAACCTGCAG 58 NA Rattus norvegicus 81 Dzip1-ps1 ENSRNOG00000046611 ENSRNOT00000072327 1 1 1 60 14 21878460 21878479 CTGGAGAACATGAACTGGAG 58 21878419 21878437 TAGTTCCCACCACCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 1 2 2 80 13 90820851 90822272 TACAGCTGGACAAGTTCCC 59 90820789 90820807 CCAAGGCATCCTCATTTCC 59 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000046305 ENSRNOT00000072556 2 1 1 98 1 88207030 88212239 AAACATAAGAAACAGGTGGCG 60 88212299 88212317 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000046305 ENSRNOT00000072556 3 1 1 98 1 88207031 88212239 AACATAAGAAACAGGTGGCG 59 88212300 88212318 CATCTTTGTACAGGGCCCT 59 NA Rattus norvegicus 81 Plin2 ENSRNOG00000007060 ENSRNOT00000009749 2 1 1 81 5 105000510 105000528 TCTCGGCAGGATCAAAGAC 60 104998969 105000469 GAATTCAATCAGATGGACAGTGG 60 NA Rattus norvegicus 81 Olr189 ENSRNOG00000049717 ENSRNOT00000040861 3 1 1 60 1 169952311 169952329 GTACAGCATGATCCTCACC 58 169952350 169952371 TCTGACTATGATGAGTACACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 3 1 1 89 1 7305870 7305888 ACAGCAACAACAGCAACAG 60 7305941 7313094 CTCTGTTGCTGTTGTTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Nrk ENSRNOG00000008880 ENSRNOT00000057049 1 1 1 80 X 110010001 110010019 TGACTAGGAGGAAGTCCCA 59 110010057 110012743 CATCTGGAACATGGATATCAATCAG 60 NA Rattus norvegicus 81 Nrk ENSRNOG00000008880 ENSRNOT00000057049 2 1 1 80 X 109992859 109996174 CAGAGTGACTCTGTGTAACC 58 109996217 109996235 CTGGATTTGACTGTGGGAG 58 NA Rattus norvegicus 81 Ncs1 ENSRNOG00000008761 ENSRNOT00000011648 3 1 1 80 3 10568091 10575774 GTACAGCAGTGGTACAAGG 58 10568029 10568049 TTTGTAGATCTTCTGGAAGCC 58 NA Rattus norvegicus 81 Rsl1d1 ENSRNOG00000032439 ENSRNOT00000044593 1 1 1 80 10 4379181 4379286 CTATCAGAGGAAGAAAGTTCCAG 58 4379322 4379344 CCTGTGATAGTTCGGTTAATCTC 59 NA Rattus norvegicus 81 Gpr165 ENSRNOG00000012995 ENSRNOT00000067298 3 1 1 80 X 65799187 65799205 ATTGTGAGCACTTGTGCTG 59 65799249 65799637 TTCCTCTGTTGTGTTGCCA 60 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 2 2 2 80 3 71275256 71276200 TGTACTCACAAGTTTCACAGG 58 71275196 71275215 GACTTGTCTGTCAATAGGGC 58 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 3 2 2 80 3 71285289 71291304 GGAATCATGAATCTGCTTTCC 57 71285229 71285247 TTTGGACCTGATGTATGCC 58 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 3 2 2 98 20 7870080 7870098 GAGAAAGAGGAAGTGGCCA 59 7870160 7877727 ATTCTGGGAGAGGTCTGTG 58 NA Rattus norvegicus 81 RGD1562029 ENSRNOG00000022723 ENSRNOT00000037555 2 1 1 80 9 66345722 66345740 GAAACCGGACCATGAACTG 59 66345784 66362085 TCCTGCTTCCTCTTTCTCC 59 NA Rattus norvegicus 81 Akr1e2 ENSRNOG00000017165 ENSRNOT00000023133 3 1 1 80 17 69373251 69373269 ACCATGAACAGCTTGACAG 58 69373313 69374857 ATGGGTGGCATTCAATCTG 58 NA Rattus norvegicus 81 Dpp9 ENSRNOG00000050748 ENSRNOT00000075386 1 1 1 80 9 10879312 10879877 CAAGTGTTCAAGGTAGCCA 58 10879919 10879939 CATGTATCGTTCTGTGTACCC 59 NA Rattus norvegicus 81 G0s2 ENSRNOG00000006019 ENSRNOT00000007879 3 1 1 60 13 112004734 112004752 GATCCCTCTGGCTAAGGAG 59 112004692 112004711 GTACAGCTTCACTAGCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm22 ENSRNOG00000014058 ENSRNOT00000019323 1 1 1 80 7 120901996 120902014 AAGAATTGGTCCCGAAAGC 59 120902058 120902240 GGGTCTCATCTAGCTCGTC 59 NA Rattus norvegicus 81 Cnst ENSRNOG00000002710 ENSRNOT00000003641 2 1 1 80 13 97890000 97891538 TTTCCAGGAAGAGGACTATGAG 59 97891578 97891597 AGATTGGCAAGCAATTGCTC 60 NA Rattus norvegicus 81 Sh3rf3 ENSRNOG00000046791 ENSRNOT00000072485 1 1 1 80 20 28572449 28572467 CAAGGCAAAGCACTTTACG 58 28572508 28596357 AACTTCATCCTTAGTGAAGGTC 58 NA Rattus norvegicus 81 Slc39a10 ENSRNOG00000011677 ENSRNOT00000016262 2 1 1 80 9 60065590 60067926 GGTGGATATGCTTCCAGAG 57 60067970 60067988 AGAATGAACTGCCCAACTG 58 NA Rattus norvegicus 81 Rcor2 ENSRNOG00000021183 ENSRNOT00000035491 2 1 1 80 15 19605538 19605557 GTCGAACTAGTGTGATGGAC 58 19605599 19605707 CCTCTTCTAGCTCATCACTG 57 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076194 2 1 2 88 12 29266759 29267953 ACTTCATCCAGAATGGAGCC 60 29268004 29268022 GATTAGGTCGATACCGGCC 60 NA Rattus norvegicus 81 Olr282 ENSRNOG00000047675 ENSRNOT00000044753 3 1 1 60 1 173455575 173455597 AATCCACTAATCTACAGCCTGAG 60 173455537 173455556 GCCATAATTTCAACACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 1 2 2 80 7 137982434 137983662 CCTTCAACTCAAAGACGGTG 59 137982373 137982392 TGTAGATTGGCAGGACAGAC 60 NA Rattus norvegicus 81 Slc9a5 ENSRNOG00000028844 ENSRNOT00000068299 3 1 1 83 19 37321107 37323453 AAAGTCTCAGGAAGCCTCG 59 37323500 37323518 CCAGGGTAGCTCTTTCTCC 59 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100,ENSRNOT00000044257 3 2 2 81 1 100329140 100329598 TGTCCACAAGAAAGCATCC 58 100329641 100329661 CTCTGAGGTCATAGACTTGGA 58 NA Rattus norvegicus 81 Emx1 ENSRNOG00000015493 ENSRNOT00000020786 2 1 1 85 4 116973987 116974005 GAATCACTACGTGGTGGGT 59 116983574 116983592 TCTGGAACCACACCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Mmp23 ENSRNOG00000017477 ENSRNOT00000066880 1 1 1 80 5 173080301 173080391 ACCTCAAGATAGGTTTCTACCC 59 173080242 173080260 CTGTAGGACCATCGAAGCA 59 NA Rattus norvegicus 81 Oaz2 ENSRNOG00000015953 ENSRNOT00000021372 3 1 1 83 8 71227459 71228317 GGGAGCAAAGAAGGATTATTAGC 60 71228358 71228378 CTTCCTGAAGCAGATGAAGAC 59 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 1 1 2 67 15 2813663 2966181 GTATCTGAGAAGCCAGCCA 59 2813614 2813634 TGTACATCATGTTACTGTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Cd209f ENSRNOG00000042317 ENSRNOT00000064859 1 1 1 80 12 2658928 2659313 CCCACTTAAACTCAGCTTCTG 59 2658868 2658889 TTATCTTCTGCTATGACCACAC 58 NA Rattus norvegicus 81 Slc50a1 ENSRNOG00000020554 ENSRNOT00000027878 3 1 1 99 2 188586874 188587000 CACGGATGTCAACAACCTG 59 188586793 188586811 TAGAGTCTGAAGCACTGCA 58 NA Rattus norvegicus 81 Akr1cl ENSRNOG00000021735 ENSRNOT00000058312 2 1 1 80 17 69854303 69855254 GATACTTGGGAGGCACTGG 60 69854241 69854262 CTGTTTGTGGTTGAAATTGGAC 59 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197,ENSRNOT00000001325 3 2 2 114 12 2203040 2203058 ATTGCTGGTCAGTCTCCTC 59 2203383 2203402 ATTGTATCCTCACGGACGTC 60 NA DesignNoJunction Rattus norvegicus 81 Birc2 ENSRNOG00000010602 ENSRNOT00000014560 1 1 1 80 8 6017656 6017677 ACTTCTGAATGCTGAAGATGAG 59 6015440 6017616 AATGACAAGTCACCTGATGC 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015075 2 1 2 81 4 132157655 132167595 CCTGACTCGGAAAGTTCCA 59 132157592 132157612 AGTCCTTAAACATGCCAAACC 59 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 2 2 2 80 1 178139641 178145861 TAGATTGGGAATAGAAGGCTACC 59 178139583 178139603 TTGTAAATGACTTCTGGACGG 58 NA Rattus norvegicus 81 LOC100364002 ENSRNOG00000050457 ENSRNOT00000072249 1 1 1 80 X 123999911 124000683 AATGTGATGTGCAGGATTGG 59 123999850 123999870 GAAGTTCACAGAACATCAGCA 59 NA Rattus norvegicus 81 Fos ENSRNOG00000008015 ENSRNOT00000010712 3 1 1 80 6 109302182 109302203 GAAAGGAATAAGATGGCTGCAG 60 109302244 109302375 TTGATCTGTCTCCGCTTGG 60 NA Rattus norvegicus 81 Slc31a2 ENSRNOG00000013631 ENSRNOT00000019379 3 1 1 92 5 78120646 78120664 GAATCTCGAGCTGAGTCCC 60 78120719 78126813 GAGAAGATGAAGTGCATCGG 59 NA InUTR Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076249,ENSRNOT00000035113 3 2 4 123 13 79046171 79048925 GCTATTAGAGAACTAGGCCTC 57 79049009 79049028 TTGACCAAAGAAAGGTGAGG 58 NA Rattus norvegicus 81 AABR07065113.1 ENSRNOG00000050817 ENSRNOT00000072451 3 1 1 109 6 110210118 110210137 AGAAGGTACCACCTGTTCTG 59 110210027 110210047 GAAGTCAGTATGACCAAGGC 58 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 1 3 3 80 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900106 TCTACTGATCATCTGGTCAGC 59 NA Rattus norvegicus 81 Fga ENSRNOG00000024848 ENSRNOT00000064091 2 1 1 80 2 182009205 182009228 CAAGGATTCTAATTCACTGACCAG 60 182009265 182010246 GTGTTATCAAAGTTGTTGGCG 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 3 1 4 70 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71961181 71965811 GTCTATCAAACTGCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076212,ENSRNOT00000057718 2 2 4 60 X 71968308 71968326 CCACTGGACTGATGTCTCC 60 71968350 71968368 GTAGGTGTGGGTGTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr4 ENSRNOG00000016362 ENSRNOT00000021893 3 1 1 60 1 80135832 80135850 CCATGACAACTGGATCCAC 58 80135874 80135892 GCTGTAGAAGATGAAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdpk1 ENSRNOG00000006136 ENSRNOT00000067660 3 1 1 80 10 13472741 13472759 ACGAAGACATGCACATCCA 60 13470378 13472699 AATTGGCTCTAGCTTGTTTGC 60 NA Rattus norvegicus 81 Stc1 ENSRNOG00000015075 ENSRNOT00000020728 3 1 1 81 15 50894433 50900088 CTTCTCCAACAGATACTACAACAG 59 50900128 50900146 GCTGTCTCTGATTGTGCTG 59 NA Rattus norvegicus 81 Cabp7 ENSRNOG00000057703 ENSRNOT00000078179 1 1 1 87 14 84970791 84971533 AGATATGGATGGTGACGGC 59 84970722 84970740 CTTCTCTGGGATCCCTGAG 59 NA Rattus norvegicus 81 Dhdh ENSRNOG00000020883 ENSRNOT00000028334 3 1 1 80 1 101472116 101474806 CTTATGGAGGCCATTTGGAG 58 101472055 101472074 GTCTCCGATAGTTCCTTGGA 59 NA Rattus norvegicus 81 Rn60_12_0468.1 ENSRNOG00000030813 ENSRNOT00000043984 1 1 1 60 12 44890770 44890789 TGAAGTGCCTCAAGTCTCAG 60 44890812 44890830 TTGAAGTGGCTGTAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp672 ENSRNOG00000002713 ENSRNOT00000003639 3 1 1 81 10 43757047 43757066 CTGGCCTAGAAGAAGGTGAG 60 43755314 43757003 ACTGCAACAACTTTGGCTG 60 NA InUTR Rattus norvegicus 81 Atp13a1 ENSRNOG00000010776 ENSRNOT00000015247 1 1 1 80 16 21364955 21364973 GTTCTCTGTCCACTTCCTG 58 21364816 21364912 ACAAACTGTTCCTGCTTCTC 59 NA Rattus norvegicus 81 Olr552 ENSRNOG00000045627 ENSRNOT00000046688 3 1 1 60 3 75234754 75234772 TTGCCATCCTGAGAATCCG 60 75234712 75234730 GAGGCACAAGTTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000046639 2 1 2 80 14 14379761 14382829 CCATCCAAACATTTAACTGCTG 59 14365122 14365140 CCTGGTCATAACACCACAC 58 NA Rattus norvegicus 81 Pip4k2b ENSRNOG00000013030 ENSRNOT00000017989 2 1 1 80 10 85666318 85666338 ATCAAGACTGTGTCAAGTGAG 58 85664666 85666278 GTGACACTCCACTATGAACTG 59 NA Rattus norvegicus 81 Ifnb1 ENSRNOG00000006268 ENSRNOT00000008224 1 1 1 60 5 106865501 106865521 TTTGCCATTCAAGTGATGCTC 60 106865461 106865480 TGCTGGAGAAATTGCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa7 ENSRNOG00000014004 ENSRNOT00000018849 3 1 1 80 1 29369039 29369059 GGTTGAGAAGGAAGAACTGAC 59 29369099 29377173 TCAACTGTGATGATCTCCCAG 60 NA Rattus norvegicus 81 Vps4a ENSRNOG00000020351 ENSRNOT00000050612 3 1 1 80 19 39236904 39237023 AAGAACAGTTGATGGGTGC 58 39237067 39237085 CTTTAGCTCCCTCCAGTCC 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 1 2 2 80 14 91855035 91855054 AACATAAAGAGCGATGCCAC 59 91855091 91858070 GGTTAGTTTCTTCCTTAATGACTGG 60 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193 2 1 2 80 2 232122283 232122302 GGGTGTAAACAACTTCTTGC 58 232122345 232129899 CCTTGTCTCTTCTCCTTGG 57 NA Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 1 1 1 99 4 179481307 179481405 TCTGCTGTATCTTGGACGG 59 179481468 179481486 CTCTGGGTCCTTCACATCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07001657.1 ENSRNOG00000052093 ENSRNOT00000072895 3 1 1 60 1 54853290 54853311 CCCACAACTTTGTAAGGAACTC 60 54853251 54853271 CATTGCTCTAAGAATGGCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt5a ENSRNOG00000015618 ENSRNOT00000021164 1 1 1 80 16 4481899 4481917 CAAGGGCTCCTATGAGAGC 60 4481960 4485783 GCCAGGTTGTATACTGTCCT 59 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957,ENSRNOT00000064266 1 2 2 80 5 172299365 172299853 GACAGCAAGAGCATAGTCAG 59 172299896 172299914 CATCCAGTTCAACTCGTCC 58 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000027791 ENSRNOT00000038497 1 1 1 60 14 52662041 52662060 AACAAAGTTCCAGAGAAGCA 58 52662083 52662101 TCAGATGAACTGGCATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 2 1 1 75 1 255573047 255573144 GAAGAAGTCTTACACCACCC 58 255572991 255573010 ATAGTATTTCAGCACAGCCA 57 NA DesignNoJunction Rattus norvegicus 81 Ddit4l2 ENSRNOG00000010047 ENSRNOT00000013661 2 1 1 80 2 242882845 242884542 GGAGTCTGCTAAGTGATTTCG 59 242884583 242884602 TTGTCTCTTCAAACACCACC 58 NA Rattus norvegicus 81 AABR07002775.1 ENSRNOG00000048489 ENSRNOT00000072734 1 1 1 60 1 84758978 84758997 TTGAATGTAAGCAGTGTGGG 59 84759020 84759038 TCGTAGTGTCGTAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.1 ENSRNOG00000026715 ENSRNOT00000031809 2 1 1 60 13 79239017 79239036 CTGTACCACCTTACAATGCT 58 79238976 79238996 ATGAGTAGAGCTTTCTGATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690997 ENSRNOG00000060271 ENSRNOT00000078636 2 1 1 60 1 60332709 60332729 CATTATCTCCAAAGGACTCCC 58 60332669 60332689 ATTGAATAACTGGTTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ech1 ENSRNOG00000020308 ENSRNOT00000027537 2 1 1 80 1 87010715 87010736 TATCTAAAGACTCCGACTGTCG 59 87010775 87013582 TGTCCATGAGGTCAATACCTG 60 NA Rattus norvegicus 81 LOC688010 ENSRNOG00000028982 ENSRNOT00000051589 2 1 1 137 1 103900591 103909851 GGAGGAAAGAAACATCAGCG 59 103900473 103900491 GCAACGATGAAGGAAAGCA 59 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 1 1 1 60 1 255801697 255801715 GCCAAGATTAAGGCTTGGG 59 255801738 255801864 GTCGTTTCAATAGCTCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510,ENSRNOT00000083831 3 2 2 80 18 59069779 59070914 GACCAGATAATGGTCAGGG 57 59069717 59069735 TTTCTGCCTCCTCAAAGTC 57 NA Rattus norvegicus 81 Usp6nl ENSRNOG00000017644 ENSRNOT00000046266 3 1 1 80 17 75797861 75797880 GGAAATCGAAAGGACTTCCA 58 75791000 75797818 CGTCGATGGAACTTCTCAG 58 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 3 1 3 66 10 13289724 13306099 GTCTGTCTGCTCTGGAGAG 59 13306128 13306147 CAATCTGGCACTTAGAAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Ercc6l ENSRNOG00000003208 ENSRNOT00000004310 3 1 1 116 X 72022227 72034015 GAGTTACCTGAGATATTCGCA 57 72022131 72022149 CTGATCACCTTCTTGGTGG 58 NA Rattus norvegicus 81 LOC100912289 ENSRNOG00000026440 ENSRNOT00000036657 1 1 1 60 1 201901483 201901503 GAGGACAGTTCTTCATCAGAC 58 201901525 201901543 TCATCTTCAGAGCAGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691189 ENSRNOG00000036888 ENSRNOT00000005445 3 1 1 81 10 85714860 85716941 CTGATCAGGATCATGGTGG 57 85714797 85714816 AGGTATCTCTGTCCTTGACC 58 NA Rattus norvegicus 81 Rpl38 ENSRNOG00000033686 ENSRNOT00000050489 1 1 1 60 14 104453011 104453029 TAAAGTTCAAGGTCCGCTG 58 104453051 104453071 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G3bp2 ENSRNOG00000002433 ENSRNOT00000003346 3 1 1 84 14 17509618 17510267 CCAGAACTTGATGAAGAGTCAG 59 17510311 17510330 CATTCTCTTGCACAGGTTCC 59 NA Rattus norvegicus 81 Blnk ENSRNOG00000013967 ENSRNOT00000019014 2 1 1 80 1 260187394 260192872 AATGGCGAAGAGTACTTTGG 58 260187333 260187354 CTGACTGTCAATAAGAACCAGG 59 NA Rattus norvegicus 81 Olr542 ENSRNOG00000050876 ENSRNOT00000046167 1 1 1 60 3 75088893 75088911 CATGCCCAACTTCATACCC 59 75088851 75088870 AGATGTCACAGAAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362751 ENSRNOG00000031052 ENSRNOT00000042825 3 1 1 60 14 44375514 44375535 AGCAGAGGAGAAGAAAGATGAG 60 44375475 44375493 TCCCATGTTGTCATCCGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363064 ENSRNOG00000001027 ENSRNOT00000042857 2 1 1 81 12 2716404 2716569 TGAACAACCATGAGGAGGA 58 2716614 2716632 TTGGAGCTGCAAATGAGAC 59 NA Rattus norvegicus 81 Tas2r104 ENSRNOG00000032448 ENSRNOT00000048210 1 1 1 60 4 165809533 165809553 TGGCCGTATTTACTTGTTTCC 59 165809493 165809511 TGCATCCTCCTTCTGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd1 ENSRNOG00000010771 ENSRNOT00000015092 3 1 1 80 10 13931243 13931262 TCCCACAACCTACTTCAGAC 59 13931302 13931437 ATTATTGCTTAAGTCCAGCTCC 59 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 3 2 2 80 3 60721404 60726729 GTCTGGCTATCATACTGCTG 58 60721343 60721361 TGGATCGCTTCTGTATGTG 57 NA Rattus norvegicus 81 LOC688684 ENSRNOG00000008516 ENSRNOT00000011244 2 1 1 60 5 125345619 125345637 AATTAAGCGAAACTGGCGG 59 125345577 125345595 CTTGAATCTTCTCCGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnase1l3 ENSRNOG00000009291 ENSRNOT00000012532 3 1 1 80 15 18716572 18716593 ATACTGCTGATGGAAATCAAGG 59 18716632 18719613 TCTTCGTGAGTTTCCATTCAG 58 NA Rattus norvegicus 81 Suv420h2 ENSRNOG00000017508 ENSRNOT00000023744 1 1 1 80 1 72672199 72672366 CATAAGATGAATGTCAGCCCTG 59 72672140 72672159 TTGCCTTAGGAAAGCTTCCA 60 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800,ENSRNOT00000028406 2 2 2 80 1 221308046 221308698 AAACTCTATGAGGGTGTGC 57 221305344 221305364 AACTAACACCATAGTCTGCTC 58 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159,ENSRNOT00000044278 2 2 2 80 6 27411348 27411366 TTAAGAAGCTGGAGACCCT 58 27412472 27412758 CCTTCTCATCTTCAGCCAC 58 NA Rattus norvegicus 81 Vom1r38 ENSRNOG00000038644 ENSRNOT00000058997 1 1 1 60 1 72230892 72230910 CACCATTTCTCCCTTCCTG 58 72230934 72230952 GGACAGCAGAGAACAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000091985,ENSRNOT00000078701,ENSRNOT00000080317 2 6 6 81 19 33986154 33986497 GAACTGCTCAGCTTCTTGC 60 33986538 33986560 GAGCTATTGGGTTTATGCAAGAG 60 NA Rattus norvegicus 81 Lrrn4 ENSRNOG00000032989 ENSRNOT00000040802 2 1 1 80 3 125531497 125531515 CGCTTACTTCTGTCCACAC 59 125526407 125531454 AGCTCAAGTTGCAATTCTGG 59 NA Rattus norvegicus 81 Ndufs1 ENSRNOG00000011849 ENSRNOT00000015852 1 1 1 80 9 69923057 69923075 AGGAATTTCTTGCTGACCC 58 69920169 69923015 AGGCTCTGCTAATTGAATCTG 58 NA Rattus norvegicus 81 Traf3ip3 ENSRNOG00000005565 ENSRNOT00000007649 2 1 1 80 13 111914329 111914347 AGGCCAAGTGTCTATCCTC 59 111911849 111914286 CATATCCCTGTTTCCTGCTG 59 NA Rattus norvegicus 81 Mrc2 ENSRNOG00000006548 ENSRNOT00000055137 3 1 1 80 10 93573873 93576615 TCCTCAACAAGTGTTTCCG 58 93576659 93576677 GTTCACAGGAGAACTGTGC 59 NA Rattus norvegicus 81 Irx4 ENSRNOG00000012720 ENSRNOT00000016975 2 1 1 80 1 32636900 32637691 AGTACCCTTATGACAGGTACG 59 32636840 32636858 TAAGTGTGCTGGTGGTCTC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000081109,ENSRNOT00000089775,ENSRNOT00000031149 2 3 4 80 12 14532398 14536616 CCACACTGCAAGATGTTCC 59 14532336 14532355 ACTGGATCAGAACTGAGGAC 59 NA Rattus norvegicus 81 Phyhip ENSRNOG00000010555 ENSRNOT00000014441 3 1 1 60 15 52775284 52775303 CATCACAAGGAGTACTTCCA 57 52776681 52776701 GGTAAGGCTGTAGTACATTCC 58 NA DesignNoJunction Rattus norvegicus 81 Osr2 ENSRNOG00000011136 ENSRNOT00000014879 1 1 1 84 7 74052615 74053576 GGATCACAGGTATATCCATTCC 58 74053620 74053639 TGCTAGGGTTCTAGACTGAC 58 NA Rattus norvegicus 81 LOC100363268 ENSRNOG00000029339 ENSRNOT00000042985 3 1 1 60 2 195940787 195940805 CAGCCTTACAAGAATGCCG 59 195940829 195940847 GTGCGCATTCTATCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r3 ENSRNOG00000048251 ENSRNOT00000045789 3 1 1 60 1 86429577 86429595 CAGGCAATCACCATCAGTC 59 86429618 86429637 GTGGAACTTTGGCTTTAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564999 ENSRNOG00000046403 ENSRNOT00000044132 2 1 1 80 17 57759504 57759524 GTTGCTTTGTTCAACTCAGAG 58 57758935 57759463 ACTAAAGTACCCAGGGAAGG 59 NA Rattus norvegicus 81 AC131537.1 ENSRNOG00000045985 ENSRNOT00000071823 1 1 1 135 10 109774006 109774382 AAGTTGTTTCGGTCTGCTG 59 109774559 109774577 CATTAAGCTGAACCGGAGC 59 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 1 2 2 80 1 154152107 154165295 CAGGTCTTAAATCTGGAGAAGG 58 154152048 154152066 CAATCTGGGCAACAGATGG 59 NA Rattus norvegicus 81 Zmym6nb ENSRNOG00000028083 ENSRNOT00000038888 1 1 1 80 5 145188419 145190204 CAACAAATGAAAGCCTTGTTCG 60 145190244 145190263 GCTTATAGGATCTGGCTGGT 59 NA Rattus norvegicus 81 Zmym6nb ENSRNOG00000028083 ENSRNOT00000038888 2 1 1 81 5 145188419 145190204 CAACAAATGAAAGCCTTGTTCG 60 145190245 145190264 AGCTTATAGGATCTGGCTGG 59 NA Rattus norvegicus 81 Chaf1a ENSRNOG00000046479 ENSRNOT00000071107 3 1 1 80 9 11010475 11010494 GATGAGAAAGAGAAGGCGGA 60 11009369 11010432 CAGTTTAGCCTCCAGAGCT 59 NA Rattus norvegicus 81 Taar7g ENSRNOG00000048265 ENSRNOT00000044271 1 1 1 60 1 22466055 22466074 ACCTGAACAGATCCTGTGTC 60 22466014 22466032 GCATAGAGGATGAGGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tvp23a ENSRNOG00000025545 ENSRNOT00000029359 3 1 1 86 10 5328480 5328498 GTTCAGCAGGAGCTTTGTG 60 5328543 5329761 CTTCCAGTTACATTCTTCACAGAC 60 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 2 2 2 80 15 109339952 109340899 TACCATGGTAATTTGGCTGTG 59 109339892 109339912 CTGCAAGGAGATCTCATAGTG 58 NA Rattus norvegicus 81 rno-mir-3556b-1 ENSRNOG00000046712 ENSRNOT00000071875 2 1 1 62 1 38238959 38238980 CATAACCGATTTCAAATGGTGC 59 38238918 38238936 CTGACCGATTTCTCCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848,ENSRNOT00000008503 2 2 2 80 X 135312296 135312317 CCCAATGCAATTGTACAATCAG 59 135311676 135312257 AGTTTCTACCTTCCTTCCGTC 60 NA Rattus norvegicus 81 Ccdc134 ENSRNOG00000007262 ENSRNOT00000056048 3 1 1 81 7 123369810 123375461 GGACCGAGTTTATTCCTAGCA 60 123375504 123375522 CGCTTCTCCTCCTTCTTCC 60 NA Rattus norvegicus 81 Fam188a ENSRNOG00000016955 ENSRNOT00000022986 1 1 1 80 17 79765449 79775891 TCAGGAATGCAACTTCTCG 58 79765387 79765408 CTTACAATAGCGTAAAGCTTCC 58 NA Rattus norvegicus 81 RGD1562652 ENSRNOG00000026051 ENSRNOT00000036147 2 1 1 83 20 3138865 3138884 ATATTCAAGAGGCACACCCA 59 3138928 3139112 AGTGTGGGAATCTTGACTCTG 60 NA Rattus norvegicus 81 Gpr107 ENSRNOG00000023589 ENSRNOT00000037742 3 1 1 80 3 10669673 10669692 CTTTACTTCCACAAGTGCCC 59 10669209 10669636 CTCGGTGATATCAATATTTAGGCTG 60 NA Rattus norvegicus 81 AABR07055834.1 ENSRNOG00000021900 ENSRNOT00000042386 2 1 1 81 7 10773858 10773876 TGGATCCTTCCCAGAAGAG 58 10772988 10773816 ACGGATGTTATACCTATAGCAG 57 NA Rattus norvegicus 81 Lrriq1 ENSRNOG00000004564 ENSRNOT00000071306 1 1 1 80 7 45175773 45175791 CCAAGCGTGTATCTGTTCC 59 45172691 45175730 TCAAATCAGCCTCATCTGGT 59 NA Rattus norvegicus 81 Dnajc11 ENSRNOG00000008802 ENSRNOT00000011960 3 1 1 80 5 169143340 169146001 TCACACCAAGATGCTTCGT 60 169146045 169146063 GCACTGTAGTAAGACCGGG 60 NA Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000079905 1 1 2 80 5 159739075 159739604 ATGAGACCACTGGTATTCAGAC 60 159739644 159739663 AACGGAACATAACAACACGG 59 NA Rattus norvegicus 81 Tdo2 ENSRNOG00000011612 ENSRNOT00000015732 1 1 1 80 2 180904080 180904098 GTTCCGGAAGCAGAAAGAG 59 180902916 180904037 CGTCGTTCACCTTTACTCAG 59 NA Rattus norvegicus 81 Kcng1 ENSRNOG00000054314 ENSRNOT00000081648 3 1 1 74 3 165026960 165026978 CTGTCAACCTGTCTGTCAG 58 165021760 165021778 GGCACATTTGGGAACACTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC102547963 ENSRNOG00000049723 ENSRNOT00000074596 2 1 1 84 16 5082804 5082822 TGAAACTCTGGCTGGAGAG 59 5087447 5087465 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Esrrb ENSRNOG00000010259 ENSRNOT00000013867 1 1 1 80 6 110444226 110452463 AGCACATCCCAGGTTTCTC 60 110452506 110452525 GGATGAGGATCTCCATCCAG 59 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 2 2 2 80 7 123047239 123052960 TCCAGCACAGAATCATCCT 58 123053003 123053022 GTTCACATCAACCTCCACAC 59 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 2 3 3 81 20 3296487 3296506 CTCCACATTGTCCTGTTCAC 59 3296131 3296445 TCCGACTCTTCTTCAAGACAC 60 NA Rattus norvegicus 81 Ccdc104 ENSRNOG00000003901 ENSRNOT00000005306 3 1 1 80 14 113619835 113619853 AGGATATGAGGGCAAAGCA 59 113619339 113619792 GCTTCTCTGTCATTTCCTCC 58 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 3 2 2 83 1 222862258 222862276 TTCCGCCCTATGTACAGTC 59 222862323 222869435 TCCTGGGATTTCACTTGGG 59 NA Rattus norvegicus 81 Ccdc175 ENSRNOG00000004774 ENSRNOT00000006346 1 1 1 80 6 94855934 94858303 CTCAGCACTCACAGTATTCAG 59 94855099 94855119 AAGTTTCTTCTCCAGTGTCCA 59 NA Rattus norvegicus 81 Aplp1 ENSRNOG00000020851 ENSRNOT00000028297 3 1 1 81 1 88900777 88900795 CGAATGAATCAGAGCCTGG 58 88899435 88900732 GGAGAAGCTCCTGGATCTG 59 NA Rattus norvegicus 81 Srsf2 ENSRNOG00000000248 ENSRNOT00000067739 3 1 1 93 10 105794950 105794969 GAGAGTCCAAGTCTAGGTCG 59 105793831 105794895 CTTGCCGATCCATCATTCTC 59 NA InUTR Rattus norvegicus 81 Serbp1 ENSRNOG00000005890 ENSRNOT00000009503 1 1 1 86 4 98038052 98042051 AAAGTGAAGAGGCTCATGC 58 98042101 98042119 TGATCTCCAGTTGAGACGT 58 NA Rattus norvegicus 81 Dcn ENSRNOG00000004554 ENSRNOT00000006070 3 1 1 80 7 38778311 38781585 GCATAAATATGTCCAGGTCGT 58 38781626 38781645 TATGAAGGGAGGCAGAAGTC 59 NA Rattus norvegicus 81 Map2k3 ENSRNOG00000006612 ENSRNOT00000008679 3 1 1 80 10 47197528 47197546 CAACCCTGAGCTGAATCAG 58 47197590 47200480 ATGGCCATCTCAATCATGG 58 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 3 1 1 70 14 115386444 115391515 AGCCTGGAAGAGTTGTGAC 60 115384908 115384928 TGGTAGTTTGTAAGCAACACC 59 NA DesignNoJunction Rattus norvegicus 81 Esx1 ENSRNOG00000048011 ENSRNOT00000072739 2 1 1 80 X 107760300 107761438 GAATCCAGAGTTCAGGTTTGG 59 107760240 107760261 CATGTTTCTATATGCTTGTGCC 58 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 1 2 2 80 X 123495223 123496115 TTCCACCCTAACGTCTATGC 60 123496155 123496176 AGACACATCATAGGTTGGACTC 60 NA Rattus norvegicus 81 AABR07072400.1 ENSRNOG00000033214 ENSRNOT00000041866 2 1 1 60 14 43694400 43694420 TCTTGCCGTTCTTAATGAGGT 60 43694360 43694378 AAACAGCCAAATTCTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gna11 ENSRNOG00000005446 ENSRNOT00000007498 1 1 1 80 7 11045599 11046631 CATCATCTTCAGGATGGTGG 58 11046673 11046692 GACGTGACATTCTCAAAGCA 59 NA Rattus norvegicus 81 Mad2l1 ENSRNOG00000005376 ENSRNOT00000007285 1 1 1 82 4 97535887 97535908 CTCATTCACTACCACAATCCAC 59 97535948 97536410 CAAATGAACCGTCTCTTCAGTC 60 NA InUTR Rattus norvegicus 81 AC107531.1 ENSRNOG00000032984 ENSRNOT00000051398 1 1 1 60 1 168845626 168845644 GGTTTGGCTTTCACATCCC 59 168845666 168845686 ACAAGTAGGTAAAGGTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325,ENSRNOT00000073757 2 2 2 80 12 22446706 22447522 ACCACTGATAAGACTATCACACC 60 22448424 22448442 GAAGCAAGCTCAATGACCC 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000021562 2 1 3 80 3 113438195 113438216 AGTATGAGGAGTACACAGACAG 59 113435692 113438155 TCACACGATCCTTCTTTCGA 59 NA Rattus norvegicus 81 RGD1562510 ENSRNOG00000031251 ENSRNOT00000043897 2 1 1 60 15 19575846 19575864 CAGGAAACAACTGGCTACG 59 19575804 19575822 CTTCACCCGTCCAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7 ENSRNOG00000005589 ENSRNOT00000007645 1 1 1 80 6 95531978 95536602 GAAGATGCCTGGAGAATGG 58 95531916 95531935 CATGGGAACTTGTGTCAGTC 59 NA Rattus norvegicus 81 Dpf3 ENSRNOG00000008086 ENSRNOT00000010926 1 1 1 80 6 106724572 106724593 CAACATGAACAAGAAGAGTGGA 59 106721680 106724531 TCTCCTCCCAAATGAGCAG 59 NA Rattus norvegicus 81 Camk1 ENSRNOG00000021781 ENSRNOT00000029728 3 1 1 80 4 145294777 145295772 CGTCTTACACAAGATCAAGCA 59 145294717 145294735 ATGATGAGGTAGAGGTGGC 59 NA Rattus norvegicus 81 Gdpd1 ENSRNOG00000060561 ENSRNOT00000088182 2 1 1 80 10 74358129 74360802 CTCAAATACTGTGAGCTCCC 58 74346951 74346970 ATCTGTTCCTTCACACTTGC 59 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119,ENSRNOT00000075512 1 2 2 80 11 82703822 82703841 GTGAGGAATCAGACATGTGG 58 82704456 82713999 AAAGAGGAAAGCAATTCTAGGG 59 NA Rattus norvegicus 81 LOC687560 ENSRNOG00000050028 ENSRNOT00000071344 2 1 1 80 19 53468836 53468856 TACCCGTTAGCTTCAATCTCC 60 53468056 53468795 AGTCCCAGAACAAATGACGA 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646,ENSRNOT00000089750 2 2 2 80 18 44891097 44891117 ACACGACCATCACAATTTCTG 59 44891157 44897273 CACTGAAGAAGGCATTCTGTG 60 NA Rattus norvegicus 81 Slc29a4 ENSRNOG00000001115 ENSRNOT00000001477 1 1 1 80 12 13922825 13923464 AGGATCACCACAGGTTACC 59 13922763 13922781 AGAGAAGAGCTGAAGCCAC 59 NA Rattus norvegicus 81 Olr1374 ENSRNOG00000045802 ENSRNOT00000072967 2 1 1 60 10 12628613 12628631 CTCATGGCTCAACTCTCCT 59 12628571 12628590 TCACATCACAGAAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 3 2 2 82 1 87777167 87777269 CACCAGCGAATTCATGTAAGAG 60 87777106 87777127 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 1 2 2 80 16 6877766 6877785 GAAGAAGTGAGCATAGCCAC 59 6877825 6878779 TACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Rps3a ENSRNOG00000011893 ENSRNOT00000016329 2 1 1 80 2 185443626 185443645 TCTGACTAACTTCCATGGCA 59 185441676 185443583 GCTTCAATCATGGTCTGCC 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400,ENSRNOT00000086368 2 2 2 80 15 19832413 19832435 TAGATGACCAGTCTGAAGATGAG 59 19825322 19832375 GGCTTGAGTATATGCTTCCTG 59 NA Rattus norvegicus 81 Fndc9 ENSRNOG00000006549 ENSRNOT00000008559 2 1 1 60 10 31324536 31324555 TCTTATACAGGAGCCATCGT 58 31324577 31324596 GGTAGTAGTCCTCCAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361993 ENSRNOG00000022144 ENSRNOT00000003557 2 1 1 60 13 107580863 107580881 ACTTTGGCTGGCATTATGG 59 107580903 107580923 AACCTGCAGGCATAAATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550196 ENSRNOG00000021551 ENSRNOT00000035071 2 1 1 80 3 170456769 170457718 ACCGACTGAAAGATGCTCC 60 170456707 170456725 CCTCTGTTCTCTGCTTCGT 59 NA Rattus norvegicus 81 Mis12 ENSRNOG00000007725 ENSRNOT00000010144 3 1 1 60 10 57660343 57660362 ATTCCTCCAAACATCCTGCT 59 57660382 57660403 CTTCACTGAAAGGATTCGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Treh ENSRNOG00000052010 ENSRNOT00000090203 1 1 1 80 8 48993422 48993578 GTCGAATTCTACTACTGGGAC 58 48993620 48993638 CATACCCTTCACCGTTGAG 58 NA Rattus norvegicus 81 Olr108 ENSRNOG00000015909 ENSRNOT00000021296 3 1 1 60 1 168639542 168639561 ATTCTGCTCAAGAGGCTACC 60 168639581 168639602 GGATACAGTAGGAGTAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa8 ENSRNOG00000049407 ENSRNOT00000070937 1 1 1 82 7 123441708 123441726 ATCCTTGGGTAACTGCGTC 60 123441102 123441663 GACGTTTCTTGTCTGTGCTG 60 NA Rattus norvegicus 81 RGD1559588 ENSRNOG00000045868 ENSRNOT00000074970 3 1 1 80 12 19890765 19890785 CACTTCCTGAACAGAATCTGG 59 19890827 19891140 CTGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 Lpo ENSRNOG00000008422 ENSRNOT00000011402 1 1 1 80 10 75103306 75103324 CACCATCCATGGCTTTGAC 59 75101439 75103262 CTCCAGGAGTTGTACCCAG 59 NA Rattus norvegicus 81 Tomm7 ENSRNOG00000043114 ENSRNOT00000065962 1 1 1 97 4 7836014 7836032 CAAGGAAGCCAAACAGAGG 59 7836090 7838582 TTGTGAATCCCAGGTAAATCAC 59 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 3 2 2 80 17 80801341 80801361 GTAGTTTACTCAGGAACACCC 58 80794937 80801300 GCAGTCACATCTGAAACTCC 59 NA Rattus norvegicus 81 Ovol2 ENSRNOG00000006850 ENSRNOT00000065553 3 1 1 113 3 138449224 138461604 AAATCAAGTTTACCACTGGCAC 60 138449132 138449150 GGTTGTGGCACTTAAGGTG 59 NA Rattus norvegicus 81 Lsp1 ENSRNOG00000020300 ENSRNOT00000054864 3 1 1 80 1 215657892 215657910 AGACTCTTTGGGAGACAGG 58 215657951 215658287 TGTCTCCAGCTACTATATCCTG 58 NA Rattus norvegicus 81 Olr541 ENSRNOG00000049276 ENSRNOT00000041127 1 1 1 60 3 74701541 74701559 AACACCCACCTTCATACCC 59 74701499 74701518 AGATGTCACAGAAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr541 ENSRNOG00000049276 ENSRNOT00000041127 3 1 1 60 3 74701242 74701261 GTGGCCTCATTAATTCCCTG 59 74701201 74701221 GGACCACAGAAGTACAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565693 ENSRNOG00000012652 ENSRNOT00000016884 1 1 1 70 6 111570909 111570927 TTGGACAAATGTCTGCAGC 59 111570788 111570806 GAGTTCCAGAAGGAGGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Tardbp ENSRNOG00000012455 ENSRNOT00000049822 1 1 1 80 5 165434733 165436233 ATTCTAAGCAAAGCCCAGAC 58 165434672 165434690 CTTCAGCAGTCATGTCCTC 58 NA Rattus norvegicus 81 Tmx1 ENSRNOG00000057934 ENSRNOT00000087540 1 1 1 85 6 92869783 92869801 CATGGTTTGGTCCAAGCTC 59 92871194 92871297 ATAGCTGTGGCTAGTCCTG 59 NA Rattus norvegicus 81 Ndufa6 ENSRNOG00000008569 ENSRNOT00000011484 2 1 1 81 7 123583287 123583918 TCATTAAGGGAAAGATGGAGC 58 123583226 123583244 GTTTCATGGAAGAACCGCA 59 NA Rattus norvegicus 81 Ap5m1 ENSRNOG00000014148 ENSRNOT00000018972 3 1 1 82 15 25947093 25947111 AACTACACGAAAGTGTGCG 59 25947154 25947619 CAAATGGGTAATTGGACCTCTG 59 NA Rattus norvegicus 81 Dus2 ENSRNOG00000019819 ENSRNOT00000026827 1 1 1 80 19 38021343 38021363 GAAGATACCCTGAACCTTGTG 59 38021405 38024515 CTCATCACGATTCCTCCCA 59 NA Rattus norvegicus 81 AABR07029933.3 ENSRNOG00000056846 ENSRNOT00000087783 1 1 1 60 10 60503716 60503740 TGTCTGTAGTATCACTGTTCTATGG 60 60503680 60503702 TTACCTGCTGGACATAAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 1 2 2 80 14 21052107 21052125 GACGTGCACTTTGATACCC 59 21052163 21052712 CTCAATATACCTATGTTGGACATGC 60 NA Rattus norvegicus 81 Rhox7 ENSRNOG00000031534 ENSRNOT00000049435 3 1 1 80 X 123979763 123979782 ATCACTATCCTAGTGCTGCA 58 123976976 123978228 TAAACCAATTCTCCACTCTGG 58 NA Rattus norvegicus 81 Tbc1d20 ENSRNOG00000005766 ENSRNOT00000008713 3 1 1 81 3 147780178 147780196 CTGATGAGATCAGGTGCCA 59 147780239 147782482 AGATCCTTCCTTGACATAGGC 59 NA Rattus norvegicus 81 Slc8a3 ENSRNOG00000029871 ENSRNOT00000048606 3 1 1 80 6 104898117 104902640 CTCCTGTTATCTCCAGAGGT 58 104898056 104898077 CTTTCCCATCTCTGCTATTCTC 58 NA Rattus norvegicus 81 Ifnlr1 ENSRNOG00000033984 ENSRNOT00000049459 3 1 1 104 5 154051463 154051481 AATGTCAACGCTACCTACC 57 154051549 154054467 AAACAGGGTCTTGCTTCTC 58 NA Rattus norvegicus 81 Lmtk2 ENSRNOG00000025155 ENSRNOT00000046381 2 1 1 80 12 12432373 12432392 CGGAACTGTTATCTCACCTC 58 12430362 12432332 GTAATCCTCCTTGTATCTGCT 57 NA Rattus norvegicus 81 Olr1516 ENSRNOG00000048690 ENSRNOT00000073002 2 1 1 60 10 61071354 61071372 TCCTCTTCTTGCTCTTCCT 58 61071396 61071414 ACAATGAGCAGATTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wrap73 ENSRNOG00000014805 ENSRNOT00000019873 3 1 1 80 5 171455567 171455588 TAAGGATCACTTCTGTCTTTGC 59 171455629 171455649 CAGGTCCTAGGCATATCCC 59 NA Rattus norvegicus 81 Naga ENSRNOG00000008064 ENSRNOT00000068020 2 1 1 80 7 123567865 123567884 GACTGGTTTGTGAAACACCA 59 123565727 123567823 GATGAGCAGCATATCTGGGT 60 NA Rattus norvegicus 81 Naga ENSRNOG00000008064 ENSRNOT00000068020 3 1 1 80 7 123567865 123567883 ACTGGTTTGTGAAACACCA 58 123565726 123567821 CGATGAGCAGCATATCTGG 58 NA Rattus norvegicus 81 Tacr2 ENSRNOG00000050658 ENSRNOT00000071394 3 1 1 83 20 31893283 31893302 TTTCCAGAACCTCTTTCCCA 59 31893348 31897641 ATGGCCATGTACCTGTCAG 60 NA Rattus norvegicus 81 Rn60_X_0730.2 ENSRNOG00000054824 ENSRNOT00000087822 2 1 1 60 X 72072906 72072927 CTTTAACAACACAGTACCGGTC 60 72072867 72072888 AATGTTAAGGATTCCTCCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_2163.2 ENSRNOG00000042507 ENSRNOT00000034180 2 1 1 60 4 150301919 150301937 CTGAAGCGTTTACTGCTGC 60 150301877 150301897 CAGTTTCTCAATCAGGTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc29a3 ENSRNOG00000000568 ENSRNOT00000000689 2 1 1 80 20 30324054 30324074 GGCATTTAAACTCCGAAACTG 58 30304874 30324016 CTCTCAAAGTAGTTCAGGATGTC 59 NA Rattus norvegicus 81 Akap17b ENSRNOG00000009746 ENSRNOT00000039809 2 1 1 89 X 123220974 123224706 AACTGTCTGGGATCCACAC 59 123220903 123220921 TGATTTCACTGTGGTCCCT 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 3 2 2 93 4 181346954 181347348 TGAAGTTGTGGAGATAAGCCA 60 181346881 181346899 TCTGTGTAAGTGGGAAGCG 60 NA Rattus norvegicus 81 LOC103693685 ENSRNOG00000060686 ENSRNOT00000086988 2 1 1 60 13 92466241 92466260 AGTTATGGCCTATGATCGCT 59 92466282 92466301 CATGAGACTAGGGTAACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 1 2 2 80 1 205623384 205623404 TCCACTGTCCATACTTGTCTG 60 205622592 205623342 TGTTTGCTGCTTGCTTCTC 59 NA Rattus norvegicus 81 Pgs1 ENSRNOG00000002949 ENSRNOT00000004007 1 1 1 80 10 107009781 107009801 GTCACTACAAGCGAAGTTTCC 60 107009842 107010504 TTCTTCCTACCTCTTGAGCC 59 NA Rattus norvegicus 81 Papd7 ENSRNOG00000017613 ENSRNOT00000023712 3 1 1 80 1 36419471 36421400 CTTGACAAAGCTACAGTGCC 60 36421440 36421461 CTCCATGTTAAAGCTGATGTCG 60 NA Rattus norvegicus 81 Armc6 ENSRNOG00000020280 ENSRNOT00000027550 1 1 1 80 16 20945053 20945073 CAACATTGTGAAGACAGTACC 57 20945115 20948877 TCATTGAGAGCCTGTAGGA 57 NA Rattus norvegicus 81 Rn60_X_0736.1 ENSRNOG00000003027 ENSRNOT00000004045 3 1 1 60 X 72676835 72676853 CCTGTCATGCATTGGAAGG 59 72676874 72676895 GATACAGGGAAGGATTCATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884,ENSRNOT00000079543 1 2 2 80 10 14526739 14526757 AGTGGCTGACAGAAGTCTC 59 14526799 14526941 AGACACTTTCTATCTGCTGGG 60 NA Rattus norvegicus 81 RGD1559810 ENSRNOG00000026207 ENSRNOT00000038249 2 1 1 145 20 36060746 36060764 TGAGGGTGACAGTACATGG 59 36060598 36060639 TCCAGACACTTGAATCTTTGC 59 NA Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 2 2 2 83 2 236426622 236431084 CCAAGGAGAAGGGAATCGT 59 236426557 236426575 AGTGACGAAGGGTTGAGTG 60 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699,ENSRNOT00000040559,ENSRNOT00000044778 2 3 3 80 1 3965530 4009700 CTTTAAGGCTCTTTGGTCGT 58 3965469 3965489 GGAACTGGAGTTGAATCACTG 59 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015,ENSRNOT00000077340 1 2 2 84 1 53541007 53541025 CAAAGAGGCTTTGGCAGAC 60 53541073 53542756 AAGACCAGATATCAGCCGG 59 NA Rattus norvegicus 81 ste2 ENSRNOG00000001957 ENSRNOT00000002680 1 1 1 80 14 22085534 22087310 GAGGATATGAAAGAGGATATCCGA 59 22087347 22087367 TACTAGCTCTGCTAATGGGTC 59 NA Rattus norvegicus 81 Wdr93 ENSRNOG00000026514 ENSRNOT00000034042 3 1 1 80 1 141513637 141513655 AGCTTCTCCTCTTACCTGG 58 141513698 141514582 CCCAAAGAGGAATCCTTGAG 58 NA Rattus norvegicus 81 Cygb ENSRNOG00000011541 ENSRNOT00000016067 1 1 1 89 10 105622690 105627787 CCTGGTGAGGTTCTTTGTG 58 105622619 105622637 CTCCTCTCCATCTCCAACG 59 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 2 1 1 107 7 11322225 11323283 CTCTGAGTACCCGACATGG 59 11323354 11323372 TTCTGTTTGCGAAGCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560513 ENSRNOG00000033673 ENSRNOT00000052326 1 1 1 61 4 132296112 132296133 GGGTCTACATCAACTATTACGA 57 132296072 132296090 AAAGGTGGAACTGTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042616.1 ENSRNOG00000050034 ENSRNOT00000044037 3 1 1 80 19 341839 342489 AACTTCTATCGCAACCTGC 58 341777 341795 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Senp17 ENSRNOG00000050153 ENSRNOT00000049542 3 1 1 60 4 160802758 160802778 GAAGTTGAGAAAGCATTGGGT 59 160802718 160802736 GCTTGAATCCCGTACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 3 1 1 276 16 20555659 20557349 ATACTCAGTCCAGAGGTGC 59 20557589 20557607 ATCGTAAGTGCAGTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr415 ENSRNOG00000049460 ENSRNOT00000070947 3 1 1 60 3 20893894 20893914 AATCTTCAAAGCCTTGTCCAC 59 20893932 20893954 TCCATAGTACAGAGAAACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Matk ENSRNOG00000020431 ENSRNOT00000027730 1 1 1 80 7 11326602 11326707 GGCTGTGATGACAAAGCTG 60 11326540 11326558 ATGACAATGTACAGGCCGT 59 NA Rattus norvegicus 81 Col24a1 ENSRNOG00000014143 ENSRNOT00000019210 2 1 1 80 2 251429983 251434796 GACTGCAAGATTCAGGATGG 59 251434836 251434857 GGTTACAGGAAGCTGATTAGGA 60 NA Rattus norvegicus 81 Cd8b ENSRNOG00000007129 ENSRNOT00000009392 3 1 1 80 4 99186026 99188953 AGTGTGAAGCTATCAGCTCTC 60 99188994 99189013 TGTTTGGTTGGTTTGAACCA 59 NA Rattus norvegicus 81 Mbip ENSRNOG00000008610 ENSRNOT00000011419 2 1 1 80 6 77240174 77243490 CTGACAGGACAGCTTAACCT 60 77240113 77240131 GGATGTTGAGAGGCTCTGG 60 NA Rattus norvegicus 81 Csn1s2a ENSRNOG00000039331 ENSRNOT00000060273 1 1 1 80 14 21941000 21941019 GTATAAGCAGGGCAATGGTG 59 21939148 21940194 TCCTCAGATGATTCCTCGC 59 NA Rattus norvegicus 81 Dnah3 ENSRNOG00000050426 ENSRNOT00000073205 1 1 1 80 1 189852843 189852863 TTCAAGTCTCCCTTAGGTCTG 59 189850953 189852803 CCATGAGGATGTAGTCAACGA 60 NA Rattus norvegicus 81 Rap2c ENSRNOG00000002529 ENSRNOT00000003414 2 1 1 105 X 138236834 138236852 CAGTTTGCCTCCATGAGAG 58 138234401 138236768 CTCTCATTGGCTTGATATCCTG 59 NA Rattus norvegicus 81 Pias4 ENSRNOG00000020230 ENSRNOT00000027441 3 1 1 80 7 11424213 11424231 CTCCTCAGACCTGCTACAG 59 11424275 11425412 AGCTTCTCCTTGACCAGAG 59 NA Rattus norvegicus 81 Lpar6 ENSRNOG00000015577 ENSRNOT00000021430 1 1 1 60 15 55128439 55128458 TCACTTCAGACACGATCCAG 60 55128480 55128499 TCACTCCTTCTAACAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685184 ENSRNOG00000024700 ENSRNOT00000034341 3 1 1 80 3 54735630 54735807 ACCTCTAATTAAGGCCTCCC 59 54735850 54735868 ATAATGTTTGGGTCAGCGC 59 NA Rattus norvegicus 81 AABR07007928.1 ENSRNOG00000047601 ENSRNOT00000072217 1 1 1 60 2 35392931 35392952 GGATCTTCTTTGGGTCTATCAC 58 35392972 35392991 TGCAGGGAGTTACTTGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr661 ENSRNOG00000046340 ENSRNOT00000008077 1 1 1 60 3 77482553 77482575 CCACTCATCTTTACCTATGTTCC 59 77482515 77482534 GAGCAAACACCTTGTCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla2 ENSRNOG00000047551 ENSRNOT00000025826 3 1 1 80 1 214001453 214001660 CTTCACCATCCGTTTGTTGG 60 214001703 214001721 CAGATGCTACCTGTCTGCT 59 NA Rattus norvegicus 81 Olr718 ENSRNOG00000060711 ENSRNOT00000073134 3 1 1 60 3 78663273 78663292 GGTGCAACTGAGATCTTCCT 60 78663232 78663251 TACAGATGGCAACATAGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000086206 1 1 2 85 10 47118015 47128925 GTTGGAATGGTTAGCCTGTC 59 47117949 47117967 TACTCAAACTGGTCCTGGG 59 NA Rattus norvegicus 81 Olr418 ENSRNOG00000029787 ENSRNOT00000043676 2 1 1 60 3 20982477 20982497 CTCTTCATCCTCTTCCTCACC 60 20982437 20982455 GAATGATGAGCAGGTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase11 ENSRNOG00000039543 ENSRNOT00000060614 2 1 1 81 15 27974902 27975432 CAAAGGAACCGACAAGACC 59 27974839 27974857 GCTCTACAAGAAGCAGTCC 58 NA InUTR Rattus norvegicus 81 Fam160a2 ENSRNOG00000017408 ENSRNOT00000023502 2 1 1 80 1 170223071 170223278 CTGGTTCTCAGGTATCTTGTC 58 170223011 170223031 TCCATAAAGATCCACATCACG 58 NA Rattus norvegicus 81 Pcdhb8 ENSRNOG00000020073 ENSRNOT00000027190 2 1 1 60 18 30437381 30437400 CTGACTGAAGACTCTGGGAC 60 30437422 30437441 GACTGGTGGGAATGATAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb8 ENSRNOG00000020073 ENSRNOT00000027190 3 1 1 60 18 30437382 30437400 TGACTGAAGACTCTGGGAC 58 30437423 30437442 AGACTGGTGGGAATGATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017735.1 ENSRNOG00000049065 ENSRNOT00000071797 3 1 1 84 15 30430018 30430210 GATTTGCTGGGTGAGAGGA 59 30430257 30430276 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Dcp2 ENSRNOG00000045895 ENSRNOT00000073952 2 1 1 80 18 35669150 35671296 AACTTTGAGACAGATGCCG 58 35671340 35671358 TACAGAATGTCCCTCAGCA 58 NA Rattus norvegicus 81 Psmg2 ENSRNOG00000017729 ENSRNOT00000024126 3 1 1 81 18 63402502 63402520 TGCCAGGATCATCGTTCTC 60 63402562 63403301 AAGATACCGAAAGGGAGTACTG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 2 2 2 80 17 77686401 77686420 AATCAAGTCTATCTGGGCGA 59 77680009 77686360 GCATGGATCTTGGACTTACTC 59 NA Rattus norvegicus 81 Flt3 ENSRNOG00000054764 ENSRNOT00000088957 2 1 1 80 12 9419247 9420680 ATTCAAACTCCAGTATGCCG 58 9420722 9420741 AATTCCCATTGAACCCTGAG 58 NA Rattus norvegicus 81 Olr242 ENSRNOG00000050447 ENSRNOT00000044619 1 1 1 60 1 172158269 172158287 TTTCTGTGATTTCCCTGCC 58 172158305 172158329 CATTCCAATAATGGAGACATCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0694.2 ENSRNOG00000022855 ENSRNOT00000049324 2 1 1 60 X 68476460 68476479 GTTCCAGCTTCACATTTCCC 60 68476499 68476520 CCGAGTAACATTTCATTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dynlrb1 ENSRNOG00000025715 ENSRNOT00000067854 1 1 1 80 3 150771361 150777941 GTGAACACAGAAGGCATTCC 60 150777983 150778002 GAAGTTGTGCATGAGGTTGG 60 NA Rattus norvegicus 81 Gdap1l1 ENSRNOG00000008790 ENSRNOT00000011748 1 1 1 81 3 159838556 159838574 ACCTCATGAAACTGGACCA 59 159838619 159839491 AGGATCTTGGCCATAAGCT 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000082962 3 1 4 89 2 149530407 149532042 CAGCTTTCTAGTAATCAGCCA 58 149532093 149532111 ACAACCTTCGTGTCTTCTC 57 NA Rattus norvegicus 81 Lactb ENSRNOG00000018081 ENSRNOT00000024452 2 1 1 80 8 72762051 72765535 GTCTGGTCAGAAGGTTTAGG 58 72761990 72762008 GCTTGCAATTCTCATGACC 57 NA Rattus norvegicus 81 Abo ENSRNOG00000046958 ENSRNOT00000044775 2 1 1 82 3 4377498 4378000 CTGACACCCACTAGGACAG 59 4377434 4377452 GTGTCAATGTCGAAGGTCC 59 NA Rattus norvegicus 81 Tubd1 ENSRNOG00000053309 ENSRNOT00000081012 3 1 1 80 10 73872416 73872436 GCTACAAGATCAGTACTCCAG 58 73872477 73874990 TTCTGAACAATAACCTCGCC 58 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593,ENSRNOT00000005858 3 2 2 80 6 44257530 44258169 GAAACTAGAAGATGAGATGAAGACG 60 44258207 44258225 AGGAACACTATGAGCCACG 60 NA Rattus norvegicus 81 LOC689991 ENSRNOG00000028362 ENSRNOT00000074427 2 1 1 81 9 73498057 73498076 GATCTTCCAGAACTCCATGG 58 73498118 73506080 ATCGGATTCCTTTATCCTGTG 58 NA Rattus norvegicus 81 Pramel ENSRNOG00000047492 ENSRNOT00000052196 2 1 1 80 X 106003654 106003673 CGTATGGAACACCTTAAGGA 57 106003713 106004642 TGGTAAGATTCTGAGAACTCTG 57 NA Rattus norvegicus 81 RGD1563220 ENSRNOG00000031532 ENSRNOT00000048783 3 1 1 60 15 44673133 44673152 CACAGGTTAACTCGGAAGAC 58 44673092 44673111 TTGGTCCTAATAGCTTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr419 ENSRNOG00000007962 ENSRNOT00000010465 1 1 1 60 3 20993380 20993400 TGTACTTCTTCCTGGCTAACC 60 20993419 20993440 GGGACTGTAGTTGATGATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000071104 2 1 2 80 12 35971496 35971517 CACCCTTAGACATTTATGAGCC 59 35971435 35971458 TTGGTTGGATGAACCAATTCTC 59 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408,ENSRNOT00000077707 2 2 2 80 1 47991236 47991254 TCAATGTAGCCTTTGCAGC 59 47991295 47991691 CTCCATAGATGTTCACCTTCTC 58 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053,ENSRNOT00000004753 1 2 2 80 10 46578093 46578114 CTACCGTTCCTCTATCAATGAC 58 46577415 46578054 GCAGATTTATTCAGCTTTGCC 59 NA Rattus norvegicus 81 Prkcq ENSRNOG00000019057 ENSRNOT00000025901 2 1 1 80 17 70991709 70991727 GAATATGCTGGGAGATGCG 59 70983009 70991666 TTCTGACCCAGCAAGATCTC 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003,ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000025291,ENSRNOT00000045163,ENSRNOT00000063853,ENSRNOT00000025045 1 10 10 81 9 95299518 95299537 GGAACTAGACCATCGAACCT 59 95299581 95299864 CCTTTGGATGACCAAGCAG 59 NA Rattus norvegicus 81 Hsph1 ENSRNOG00000000902 ENSRNOT00000001201 1 1 1 80 12 6324933 6325612 TATGTGAGCAGGAACACGA 59 6324871 6324889 CTTGGTCCTCTCCTTCCTC 59 NA Rattus norvegicus 81 Trim54 ENSRNOG00000006146 ENSRNOT00000008113 1 1 1 81 6 26604106 26604240 AGGAGCTGATCAACAAGGTC 60 26604044 26604062 TGCTCCATGCTCTCATAGC 60 NA Rattus norvegicus 81 Chchd10 ENSRNOG00000028356 ENSRNOT00000031472 2 1 1 80 20 13665202 13665368 AAATACAATCACGGTCTGAGC 59 13665142 13665160 ATCAAACTGTCGGTGAGGG 60 NA InUTR Rattus norvegicus 81 E2f8 ENSRNOG00000022537 ENSRNOT00000035512 3 1 1 80 1 104192092 104192353 CAGCAAAGCTGAGAGTTCTC 59 104192031 104192050 AACTGCATCTTGCAGATAGC 59 NA Rattus norvegicus 81 Chga ENSRNOG00000052549 ENSRNOT00000090857 1 1 1 92 6 126443327 126443346 CAGAGAAGACAGTGTGGAGG 60 126443401 126445165 TCTAGCTCCTGGTCCTCTG 60 NA Rattus norvegicus 81 Celsr3 ENSRNOG00000053889 ENSRNOT00000084220 2 1 1 80 8 117629299 117629398 AGATTGTCGACTCACAATGG 58 117629440 117629459 GGCATGTCATTTCCAAAGTC 58 NA Rattus norvegicus 81 Exo5 ENSRNOG00000037432 ENSRNOT00000056644 1 1 1 98 5 139852794 139852812 AAGTACCTACGCATCTCCC 59 139851412 139852732 GAACAAGTAGGGACCTGGG 59 NA InUTR Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 1 2 2 100 20 45189915 45193524 TTTGTAAGCTCCATCGAGC 58 45189833 45189851 TAGTGTCCCAGAATGACCA 58 NA Rattus norvegicus 81 RGD1305347 ENSRNOG00000020259 ENSRNOT00000027432 3 1 1 124 5 137359671 137359863 AAACTTAACCTTGTCCTTAGGG 58 137359948 137359966 TGAGTATGGAGAGGACCAC 58 NA Rattus norvegicus 81 Rn60_X_0699.1 ENSRNOG00000051093 ENSRNOT00000076854 1 1 1 60 X 69558322 69558341 ATGGATGTGAACATCACCAG 58 69558362 69558382 TGATGTCTTCATTACCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrac1 ENSRNOG00000009103 ENSRNOT00000012121 3 1 1 80 7 114323635 114323653 ATGAAGAGCTCTCCTGAGG 58 114323697 114325725 CTGAACAAAGAGCTCCGTG 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704,ENSRNOT00000041514 1 2 5 80 14 22193669 22211523 TACAGTAAAGCCTTAGGAAGAC 57 22211563 22211582 CCAATATGTTCGCATTAGCC 57 NA Rattus norvegicus 81 Ubald1 ENSRNOG00000027368 ENSRNOT00000033695 3 1 1 92 10 11341495 11341998 ACCAGATGATGTGCACTCC 60 11342054 11342072 TTTCAGAGGCCTTGAGACG 60 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 2 2 2 100 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780661 117780680 TCTTCTTGTCTCTGGAGCTC 59 NA Rattus norvegicus 81 Rn60_18_0532.1 ENSRNOG00000043100 ENSRNOT00000055675 2 1 1 60 18 53905410 53905429 CAGGTCATCTTTCCAGTCAG 58 53905451 53905470 CACCAACCTCTAGTACATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564463 ENSRNOG00000003601 ENSRNOT00000004815 3 1 1 80 13 99388113 99392484 GAGATCCTGGCAAAGTATCCA 60 99392523 99392544 AATCATTGCGGTTATGATCCAG 59 NA Rattus norvegicus 81 Ankrd11 ENSRNOG00000027906 ENSRNOT00000031389 2 1 1 80 19 55716826 55717286 AAAGCTCTACTGAGAGCTCTG 59 55716766 55716785 AGTCTGTGTTATTGCCATCG 58 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858,ENSRNOT00000067639 3 2 2 81 16 6662518 6662539 CAGAGACTGTCGGAATATACCA 59 6662163 6662476 TAGGTCCCGTTGTTGTCTG 59 NA Rattus norvegicus 81 Pilra ENSRNOG00000033017 ENSRNOT00000039797 2 1 1 80 12 21679407 21679427 TCTTCTGCAAACAACAGAAGG 59 21679468 21683837 GTGCTGGTGTTATTGGTCAC 60 NA Rattus norvegicus 81 Cdc42bpg ENSRNOG00000027456 ENSRNOT00000038016 1 1 1 80 1 221676999 221677017 TAGTGAAGGGAGATAGCCG 58 221677061 221677478 AGTCCATCACCAGGTACAG 58 NA Rattus norvegicus 81 Nfe2l3 ENSRNOG00000010886 ENSRNOT00000014826 2 1 1 80 4 81231408 81231650 TTCTCTAGAGGGCATCTCAG 58 81231692 81231711 TTGTGTACTGAGGGATTCAC 57 NA Rattus norvegicus 81 Vstm5 ENSRNOG00000010480 ENSRNOT00000013927 2 1 1 80 8 13814084 13814105 CTATGTTATCACCGTCACAGAG 59 13814145 13814256 TCATAGCGGATCTCAGACAC 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 3 2 2 80 3 100389876 100389894 AATTGGCTACATCGAGTGG 58 100389935 100393603 AAGATCTTTATTGAGTCCCTCG 58 NA Rattus norvegicus 81 AC133403.1 ENSRNOG00000046836 ENSRNOT00000002447 2 1 1 80 11 70060038 70062341 TGGTCGTCTTTGACAATGC 59 70062385 70062403 GAAACCTGACAACCAGACC 58 NA Rattus norvegicus 81 LOC103689929 ENSRNOG00000058333 ENSRNOT00000086076 1 1 1 80 X 123853471 123856904 CAGAAGAAAGAAGACATCTGGC 59 123852095 123852115 GTTCTCGTCTTCCCTTAAACC 59 NA Rattus norvegicus 81 LOC103689929 ENSRNOG00000058333 ENSRNOT00000086076 3 1 1 80 X 123853472 123856905 GCAGAAGAAAGAAGACATCTGG 59 123852096 123852116 TTCTCGTCTTCCCTTAAACCA 59 NA Rattus norvegicus 81 Ints1 ENSRNOG00000022599 ENSRNOT00000060370 1 1 1 80 12 16956124 16956142 AACTTCCAGGCTTTCTGTC 58 16956185 16956817 AAACCGCTCCTTAAATTCCA 58 NA Rattus norvegicus 81 RGD1563780 ENSRNOG00000047338 ENSRNOT00000068439 1 1 1 80 15 30161230 30161422 AGATTTGCTGGGTGAGAGG 59 30161168 30161186 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000085170 1 1 3 82 X 123988491 123988511 GGAATCACTATCTCAGTGCTG 58 123888234 123963879 AAACCATCTCTGCACTTTGG 59 NA Rattus norvegicus 81 Cd5l ENSRNOG00000023068 ENSRNOT00000057022 3 1 1 81 2 186687619 186690836 TGTGTTTCTCAGAGTCTCCA 58 186690880 186690898 TTGTGTTTCACCTCCACTC 58 NA Rattus norvegicus 81 Sept12 ENSRNOG00000003137 ENSRNOT00000061208 3 1 1 81 10 10779148 10780823 CAATGACAAGTGCTGGGAC 59 10780868 10780886 GGTGATGAGAAGCTCCTCC 60 NA Rattus norvegicus 81 AABR07035751.1 ENSRNOG00000046696 ENSRNOT00000074863 1 1 1 80 12 21670231 21670250 TTCCTGAACAGAATCTGGCT 59 21669880 21670188 CTGCTGAATTCCCAGTGTG 59 NA Rattus norvegicus 81 Stkld1 ENSRNOG00000027911 ENSRNOT00000031316 3 1 1 80 3 5494466 5494989 ATGGCCAACATCTTAGATGTC 58 5495030 5495049 TGTCAGAAGCTTGTTAAGGG 58 NA Rattus norvegicus 81 Rn60_X_0693.1 ENSRNOG00000051289 ENSRNOT00000076559 3 1 1 60 X 68408641 68408660 GCAAAGCACTATCACAAGGA 59 68408681 68408701 TCCTAGCCATGTGAATCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtm2a ENSRNOG00000025420 ENSRNOT00000061648 2 1 1 80 19 880542 883721 CTATGACAGATCTATTGAACAGCC 59 883759 883778 TTCGTCTAGCCTTGAAAGCA 60 NA Rattus norvegicus 81 Olr125 ENSRNOG00000016027 ENSRNOT00000021436 2 1 1 60 1 168868606 168868625 TTTGCCAAACATTCCTCTCC 59 168868565 168868587 GCACCAATAAGTAGATATGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr125 ENSRNOG00000016027 ENSRNOT00000021436 3 1 1 60 1 168868521 168868545 CATCTATAGTGTGAAGACCAAACAG 60 168868485 168868503 GGGCGAACAAATCAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam208b ENSRNOG00000018011 ENSRNOT00000048933 1 1 1 80 17 70297224 70297640 GTCTTCCTAACAGACAAGCCT 60 70297676 70297700 GAAGTAGTTTACATCTGTAACGAGG 59 NA Rattus norvegicus 81 LOC682489 ENSRNOG00000037960 ENSRNOT00000057735 1 1 1 94 13 98728874 98772765 GGGATTGGGAACATTCGTC 59 98728798 98728816 TATTCAGCCAGAAGACGCA 59 NA Rattus norvegicus 81 Sult1b1 ENSRNOG00000001967 ENSRNOT00000002699 3 1 1 103 14 22143140 22146484 AGAAGATCAGGTGTTGAACTC 58 22146548 22146567 CACTTGTTATCCCAGAAGGA 57 NA Rattus norvegicus 81 Terc ENSRNOG00000051777 ENSRNOT00000084300 3 1 1 60 2 116433027 116433046 CAAGGACAGTAACGGAACTG 59 116433069 116433087 TGCACTTCCCACATCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctrb1 ENSRNOG00000019068 ENSRNOT00000026017 1 1 1 80 19 43906984 43907906 ATACAATGCCCTCAAGACC 57 43906922 43906940 CAGGACTTCTTGCAGTCAG 58 NA Rattus norvegicus 81 Olr679 ENSRNOG00000057763 ENSRNOT00000084947 1 1 1 60 3 77911251 77911270 ACACAATTGTTTACCAGCCA 58 77911210 77911234 CCATAGATGTCAAGATAATCACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk10 ENSRNOG00000003813 ENSRNOT00000005175 3 1 1 88 6 122471746 122471764 GAAACTCCTCCAACAGCAG 59 122463218 122471695 ATTCCCATACCCTATGGTCG 59 NA Rattus norvegicus 81 Fam26f ENSRNOG00000037757 ENSRNOT00000057317 2 1 1 60 20 27682258 27682277 GATGCAGGAGATCCTGAGTC 60 27681612 27681630 TATCAGAACCCAACCGAGC 60 NA DesignNoJunction Rattus norvegicus 81 AC123018.1 ENSRNOG00000042147 ENSRNOT00000065311 2 1 1 81 1 193844590 193844608 AGAAGTTCATCAGGCACCA 59 193844653 193844694 CCCTTGAATTTGACGCCTC 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120,ENSRNOT00000081282 3 2 2 80 1 91016022 91016040 TGAGCTGATCAAGGTGGAG 59 91016083 91018090 AGCAAAGTCACTCCTGTCTC 60 NA Rattus norvegicus 81 Olr554 ENSRNOG00000010035 ENSRNOT00000013319 3 1 1 60 3 75266089 75266107 GTCCTGACCCTAGCTTGTG 60 75266129 75266149 GGGCAATCACATAAATCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040565.1 ENSRNOG00000037736 ENSRNOT00000050903 1 1 1 60 X 104336759 104336780 AAAGCTCATTTCCTGCTATGAC 59 104336720 104336738 CATGAGATCCACCACCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm12 ENSRNOG00000049913 ENSRNOT00000026700 3 1 1 60 3 152176472 152176493 GGTAGTTTAAATGCTCCTCCTG 59 152176433 152176452 TAGGAACACTTCCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde6d ENSRNOG00000018610 ENSRNOT00000025262 3 1 1 80 9 93565424 93565442 TCTTCAGCAGAGCAAATGG 58 93564487 93565381 GAAGAACCACTCTTCTAGGC 58 NA Rattus norvegicus 81 Tmco5b ENSRNOG00000000009 ENSRNOT00000000010 2 1 1 80 3 104750034 104750701 CTGTTGGATGATGAGGATGAG 58 104750741 104750761 GTCAGAGTTCAGGTACTTGAG 58 NA Rattus norvegicus 81 Zranb3 ENSRNOG00000003979 ENSRNOT00000005355 3 1 1 80 13 44671710 44675674 CTCTATACCAAGGATGGAAAGC 58 44671651 44671670 TGGTAAGTCTTCCCAAAGGT 59 NA Rattus norvegicus 81 Inpp5k ENSRNOG00000056954 ENSRNOT00000084496 3 1 1 80 10 63783345 63783909 GACCATGACCTCATTCTGTG 58 63783949 63783970 TATACACTCCTGAACAAAGAGC 58 NA Rattus norvegicus 81 Tnfrsf13b ENSRNOG00000002304 ENSRNOT00000003139 1 1 1 83 10 47412628 47412646 AGAGAACCTGTGTCTCCTG 58 47412692 47414555 TGCAGTTGATGAATTTGCAG 58 NA Rattus norvegicus 81 Pebp4 ENSRNOG00000026247 ENSRNOT00000039454 2 1 1 81 15 51727303 51729676 GCAATATAATAACAGACTACCAGCC 60 51729712 51729733 TGAAGGTAGACAAAGAACTGGT 59 NA Rattus norvegicus 81 Slc17a9 ENSRNOG00000010275 ENSRNOT00000013623 1 1 1 80 3 176243484 176244409 GTAAGTTCATGCAGGTCATGG 59 176244451 176244469 ACTTGAGGAAGCTTGTGGT 59 NA Rattus norvegicus 81 Prss38 ENSRNOG00000022548 ENSRNOT00000050370 3 1 1 82 10 45725381 45726059 TTTGCCAGGGAGAAGAGAC 59 45725317 45725336 CACTGGGTATGTTTGTTGGC 60 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 1 2 2 80 X 110846463 110862325 AAAGTAGGAAGCAGAGGCA 59 110862369 110862387 CTCCTTGTTTCAAGGTGCG 60 NA Rattus norvegicus 81 Calm1 ENSRNOG00000004060 ENSRNOT00000064679 1 1 1 82 6 124224161 124224183 GCTAACAGATGAAGAAGTAGACG 59 124224219 124224387 GTACGAATTCTTCATAGTTGACCTG 60 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317,ENSRNOT00000083855 3 2 3 90 8 111773206 111773225 GAAGAAAGTCCTTCCTGCAG 59 111770200 111773155 TTTATTGGCTGAGATATCCCG 58 NA Rattus norvegicus 81 Plekhg4 ENSRNOG00000016479 ENSRNOT00000022439 1 1 1 80 19 37332585 37332691 GGAGTCTGGAGAAGTTGGT 59 37332734 37332753 CATGACAACTGTGGTGACTC 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 1 2 2 80 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409727 78409745 CATCCTCTTCCTCCACTCC 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000036338 2 1 2 80 8 12161674 12241775 GCACAGACAGGATCAACAC 59 12241818 12241837 GTGTTTGGATTTGAGCAGGA 59 NA Rattus norvegicus 81 Ephb4 ENSRNOG00000045952 ENSRNOT00000072208 2 1 1 80 12 22397760 22398716 TACACAAGTTCCCTGGGAG 59 22397698 22397716 GGCAGACGTGAATTTCCTG 59 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047415 ENSRNOT00000042300 2 1 1 60 4 93791068 93791086 CCATGCTCAGTTTCTTGGG 59 93791220 93791239 CTGAATGTCACATCTGGCAC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1564955 ENSRNOG00000024068 ENSRNOT00000033044 2 1 1 80 X 135732635 135733431 GGAAGCAATAACACCTCCA 57 135732573 135732594 TTGGATTCCAGAGATTCTTGAG 58 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705,ENSRNOT00000090572 2 2 2 80 15 108036706 108036726 TAAACCAGCTATTCCGAGTCC 60 108034985 108036666 CCACATGAATAATGACCCGAG 59 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 2 2 2 80 7 71136414 71138334 GAGTTGGGAACAGAGGACTC 60 71136353 71136373 TTCTCATCCACTCATTGGGAC 60 NA Rattus norvegicus 81 RGD1306739 ENSRNOG00000000634 ENSRNOT00000000785 2 1 1 80 20 21346982 21347000 ATTCCAGCACTACAGGCTC 60 21347044 21419901 TCTATGGTTTGCTCCGTCC 60 NA Rattus norvegicus 81 Fah ENSRNOG00000013223 ENSRNOT00000068167 1 1 1 80 1 146718802 146718822 CACCACTCTGTTAATGGATGC 59 146718110 146718760 GCTTTCAGGGTCTGATCCA 59 NA Rattus norvegicus 81 AABR07072281.1 ENSRNOG00000052199 ENSRNOT00000071110 2 1 1 80 12 21970701 21970723 CTCTTACCAGTGCAGAATTTGAG 60 21969270 21970662 TACAGGAAGTCTCCAAGCAC 60 NA Rattus norvegicus 81 Casp1 ENSRNOG00000007372 ENSRNOT00000009993 1 1 1 80 8 2610728 2610749 GAAGATGATGGCATTAAGAAGG 57 2610789 2613415 CCAGGACACATTATCTGGTG 58 NA Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 2 1 1 64 1 7801343 7801386 CACTAGAAGACGTGAAGAAACAC 60 7801301 7801319 GTTCCTTGTGTCCTTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 3 1 1 65 1 7801343 7801386 CACTAGAAGACGTGAAGAAACAC 60 7801300 7801318 TGTTCCTTGTGTCCTTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Tmem72 ENSRNOG00000023340 ENSRNOT00000037397 3 1 1 80 4 148844837 148844857 AGCTCCAAGTATTCTGGACTG 60 148829185 148844796 CCACTCCAATCAGTACTGCA 60 NA Rattus norvegicus 81 Ptf1a ENSRNOG00000016902 ENSRNOT00000022727 2 1 1 98 17 86200612 86200630 GTCATCATCTGCCATCGAG 58 86201016 86201034 TTCATCAGCCCAGGAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Cenpt ENSRNOG00000024178 ENSRNOT00000036702 1 1 1 80 19 37815216 37815404 CAGAGCCAAATGAGCAGAG 59 37815154 37815174 TCTTAGTTCTGGAGACTGAGG 58 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 3 2 2 80 3 5472624 5473087 CTTGAAGTTTCTGATGAGGAACC 60 5472566 5472584 CTCTTCCCTTCTGAGCGAG 60 NA Rattus norvegicus 81 Lmod2 ENSRNOG00000045831 ENSRNOT00000073466 3 1 1 123 4 51553842 51558886 GAATGTGGAAAGCTTGCAG 58 51558972 51558991 CTTCCTCTGTAGACTCCTCC 58 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000003817 2 1 3 80 13 82563779 82563797 ACAGACTCTGCTCACTCTG 59 82563838 82564670 CTCGCATAAATCAGGAACTGAG 59 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000003817 3 1 3 81 13 82563779 82563797 ACAGACTCTGCTCACTCTG 59 82563840 82564671 ACTCGCATAAATCAGGAACTG 59 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 1 2 3 88 13 82562096 82563162 GTTTCAACCTTGCTGGGTG 60 82563213 82563232 AGGAATAACGTCACCTCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 2 1 1 93 1 98488142 98488160 CACTGCAAAGAATGCCTGG 60 98487823 98488085 GAAGCCCGCAATAAACGAG 60 NA DesignNoJunction Rattus norvegicus 81 Gpx2 ENSRNOG00000055672 ENSRNOT00000080270 2 1 1 85 6 99842959 99842977 CTCAATGAGTTGCAGTGCC 60 99840616 99842911 TGACAGTTCTCCTGATGTCC 59 NA Rattus norvegicus 81 Bcl6 ENSRNOG00000001843 ENSRNOT00000002522 2 1 1 90 11 80275641 80275659 GAAATCTGTGGTACCCGCT 60 80275712 80277867 ACTTCTCACAATGGTACGGT 59 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359,ENSRNOT00000008504 2 2 2 119 6 99433617 99433635 GATATCTGTTGGACCACCG 58 99433959 99433977 CTTGCCATGTTGGAAGACC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tnfsf10 ENSRNOG00000013269 ENSRNOT00000017758 3 1 1 80 2 113023083 113024116 AATTCCAATCTCCAAGGATGG 58 113024158 113024176 AGAAATGAATGCCCTCTCC 57 NA Rattus norvegicus 81 Tbc1d16 ENSRNOG00000049758 ENSRNOT00000075171 2 1 1 80 10 108266427 108266446 TCGGACAGATAGGAACAACC 59 108265485 108266386 TAATTCAGCAGGATCCTCCTC 59 NA Rattus norvegicus 81 Efcab7 ENSRNOG00000009782 ENSRNOT00000013089 1 1 1 80 5 118690228 118690247 TCTGTTTCCTTCACAATGCC 59 118690287 118696389 CTGCCAATCCTTTAAGTTTGGT 60 NA Rattus norvegicus 81 Armc5 ENSRNOG00000019935 ENSRNOT00000027032 1 1 1 80 1 199656252 199656270 CAACTGCTGTACAGAAGGG 58 199656314 199657629 CACTGAAGAATGGTCACCA 57 NA Rattus norvegicus 81 Churc1 ENSRNOG00000007336 ENSRNOT00000009621 2 1 1 114 6 99823373 99823397 GGAGAAGAAATAGTTACCTATGACC 59 99825720 99831428 GACACAGCATGGTATATTCCTG 59 NA Rattus norvegicus 81 Klhl30 ENSRNOG00000020105 ENSRNOT00000027232 3 1 1 89 9 98496683 98497042 ATGTCTACGTCACAGGTGG 59 98497095 98497113 AGACAGCTTCCTTCAGTGG 59 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 1 2 2 80 15 2639716 2639734 CATCAGGTACCAACTGCAC 59 2636608 2639675 TGACCTTTGCAGAAATAGAAGC 59 NA Rattus norvegicus 81 RGD1308065 ENSRNOG00000026918 ENSRNOT00000046664 1 1 1 80 11 88136830 88137183 ATCAACGTCAAAGAGCCAC 59 88137224 88137245 CCTGCCAAATATGAGAAATGGA 59 NA Rattus norvegicus 81 RGD1308065 ENSRNOG00000026918 ENSRNOT00000046664 3 1 1 80 11 88136215 88136234 ACCCTCTGTCTACACTATGC 59 88136273 88136793 GAAATATCCAGTTTCTCCATCGG 59 NA Rattus norvegicus 81 Ppp1r14c ENSRNOG00000016368 ENSRNOT00000022046 1 1 1 145 1 39812176 39812194 GAAGAATGGATCGTGGAGC 58 39878289 39880392 CAGTCTACAAGAGCTTCCTG 58 NA Rattus norvegicus 81 Sgsh ENSRNOG00000049552 ENSRNOT00000070934 2 1 1 80 10 108471344 108473030 ATGGATCAAGGGATAGGATTGG 60 108471285 108471305 GGATGTGAAGATGATGAGGGT 60 NA Rattus norvegicus 81 Tmprss11d ENSRNOG00000055991 ENSRNOT00000088552 1 1 1 80 14 23378817 23387264 CTTCAGAAGCTACTCGAATCC 58 23387303 23387324 ACTCTCACTCTTAACCTAGGAC 59 NA Rattus norvegicus 81 RGD1560088 ENSRNOG00000032733 ENSRNOT00000047207 2 1 1 60 1 90729476 90729494 GGACCTATGCAAGATCAGC 58 90729518 90729536 AGTGAGTTCTTGGGAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd17 ENSRNOG00000000231 ENSRNOT00000046563 2 1 1 91 7 119647622 119648736 AATCGGACAGGGATGAGAC 59 119648791 119648809 CAATTTGCCATGCCTGAGG 60 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 2 2 2 80 5 21344899 21345641 TACGAGGAAGGTGTTGAGTG 60 21344838 21344858 TCTGGAGTTCAGGTTGATAGG 59 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000048115 ENSRNOT00000075625 2 1 1 91 15 30926974 30927087 TTTCTCATGAGAGTTGCCCA 59 30927141 30927159 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Myl6b ENSRNOG00000028837 ENSRNOT00000048453 2 1 1 91 7 2911779 2912335 CTCTCCAAAGTGGTGATCGA 60 2911488 2911506 ATCTTGCCATCACCCACTC 60 NA Rattus norvegicus 81 Nudt16 ENSRNOG00000012962 ENSRNOT00000017318 3 1 1 123 8 113674699 113674717 CTTCTATGCCAAACGCCTG 59 113673880 113673898 ATCACGCATGATGTACAGG 58 NA DesignNoJunction Rattus norvegicus 81 Fbxw2 ENSRNOG00000018687 ENSRNOT00000025399 2 1 1 80 3 13872168 13876237 ATATCCTCAGGGTCATCAAGAC 59 13872109 13872127 CAAACAGCAGAGCGAAGAC 60 NA Rattus norvegicus 81 Fbxw2 ENSRNOG00000018687 ENSRNOT00000025399 3 1 1 80 3 13876390 13877355 TACGAGATCAAGATTTGGCC 58 13876329 13876350 ACTTCTATCCTCAGAGACAGAC 59 NA Rattus norvegicus 81 RGD1561149 ENSRNOG00000008113 ENSRNOT00000010688 3 1 1 80 5 147410783 147412520 TTAAGAAAGGTTCTGCCAAGG 59 147410723 147410742 CATCTCCTACAGATCCTGGC 60 NA Rattus norvegicus 81 Mbd2 ENSRNOG00000011853 ENSRNOT00000016112 3 1 1 80 18 65874889 65876149 CCTAAAGGTCTTCAAGGAGTC 58 65876191 65876209 GCTTGTATGCAAAGCACTG 58 NA Rattus norvegicus 81 Syt9 ENSRNOG00000019613 ENSRNOT00000026607 2 1 1 80 1 171658504 171658522 CTTCTTCGACTTGGCTGAC 59 171658565 171715882 AGGTCCACATTATCGTTGGT 59 NA Rattus norvegicus 81 Ces2j ENSRNOG00000029744 ENSRNOT00000061734 3 1 1 80 19 492651 492728 TAGGTCTTCTCAGAATCCTGG 58 492770 492788 CGATCTTTAGAGCAGCTGG 58 NA Rattus norvegicus 81 Ms4a15 ENSRNOG00000026957 ENSRNOT00000037226 1 1 1 80 1 227035423 227035775 TGTCACTAACTGGGATGTGG 60 227035362 227035382 ATGACAGCAATGAAGAACTCC 59 NA Rattus norvegicus 81 Pole2 ENSRNOG00000004242 ENSRNOT00000005835 1 1 1 80 6 91503315 91503335 GAAGATCAAGTGTTTCATGCC 58 91502018 91503276 ATTTCCATAGTATGCCCTTGTG 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436,ENSRNOT00000075671 1 3 3 97 12 11080612 11082602 TCCTCTACGGATTTGGGAC 59 11080533 11080551 GTAATTCAGCACAGTGCCA 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436,ENSRNOT00000075671 2 3 3 97 12 11080610 11082600 CTCTACGGATTTGGGACCC 60 11080531 11080551 TAGTAATTCAGCACAGTGCCA 60 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 3 3 3 80 14 28523031 28532853 ACACAGAAGCTGAAATCTGG 58 28522970 28522989 GGCGTTCAAATGATTTCTGG 58 NA Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 1 2 2 103 4 157515291 157515976 CTTCAAGTTCTGCTGGGAC 59 157516043 157516061 GAGACAGGTCTGTCAGTGG 59 NA Rattus norvegicus 81 AABR07043711.2 ENSRNOG00000060995 ENSRNOT00000071962 3 1 1 82 19 36238374 36239560 ATCCATGAAGAACAGGCCA 59 36238310 36238328 GAATTGACATGACCGCCTC 59 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 3 1 1 66 5 106952582 106952601 CAGAGCAGAAGTCTGGAGAG 60 106952627 106952789 TTCCTCCTTACTCTGTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043200.1 ENSRNOG00000058276 ENSRNOT00000040473 1 1 1 81 19 26416973 26417456 CATGAAGAACAGGCCACAC 59 26417500 26417519 CAGAATTGACATGACTGCCT 58 NA Rattus norvegicus 81 Tp53tg5 ENSRNOG00000026215 ENSRNOT00000029206 1 1 1 80 3 160921725 160922037 GAGTAAAGTGGCTTCTAAGATGC 60 160921667 160921686 TTCCGCTCAATTACTTTGCC 59 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 1 2 2 80 1 164302574 164302592 GGAAGATGCAGAAGAAGGC 59 164301987 164302530 CCAGATGTTTCTGCAGGTC 59 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562,ENSRNOT00000078675 2 2 2 80 10 51707070 51707088 CAGTCAGACTCTGGGAAGC 60 51704227 51707028 CAAAGACTTGGACTTTACCGC 60 NA Rattus norvegicus 81 Mrpl52 ENSRNOG00000039297 ENSRNOT00000060193 1 1 1 90 15 33071215 33072033 GAGAAGCTTGCAAGACGAG 59 33072087 33072105 CTTCCTGCAGTTTCTGCTG 59 NA Rattus norvegicus 81 LOC100909736 ENSRNOG00000046241 ENSRNOT00000074921 2 1 1 60 3 158920184 158920205 TGGAGGTCTTTGTTGTTATAGG 58 158920145 158920165 GAGATGAAGATGGTGATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efna1 ENSRNOG00000020573 ENSRNOT00000027920 1 1 1 80 2 188593019 188596014 TTCAAATCCCAAGTTCCGA 57 188592957 188592976 TAATGTGGGCAGATGATGTC 58 NA Rattus norvegicus 81 Stk26 ENSRNOG00000007879 ENSRNOT00000010596 3 1 1 80 X 138089126 138089921 GACTCTAAAGCTGACATATGGT 58 138089961 138089980 ATGCATGTCAGAATTCGGAG 59 NA Rattus norvegicus 81 Cyp2ab1 ENSRNOG00000042367 ENSRNOT00000066953 3 1 1 81 11 84509155 84509508 CAAATCACCAAGGCCATGG 60 84509550 84509571 CCAGAAATAGGTCAATCACCAC 59 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 2 2 2 80 13 99273801 99273821 TTAGAGAAGTTCTCCACCTGG 59 99272349 99273759 ATCCAGGGAGAACTTCCTC 58 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392,ENSRNOT00000079836 2 2 2 80 12 12778021 12781956 GTATGATGAGTCCGATGTCC 58 12777960 12777978 GCCACTAAGAAAGGGAACG 59 NA Rattus norvegicus 81 Tigd3 ENSRNOG00000023318 ENSRNOT00000031678 1 1 1 99 1 221251217 221251235 TGATTCTGTCAAGGCCCAG 60 221250302 221250321 CTTCTTGGTGTTTAGCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Amt ENSRNOG00000050214 ENSRNOT00000073559 3 1 1 80 8 117068870 117068890 GACAGTCATGTTGATTCACAC 58 117068930 117069381 TATCTTGGTCTGTAGCATGTG 58 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318,ENSRNOT00000081804 3 2 2 80 1 22242939 22245606 CAAATTATCAGCGCAAATCCAG 59 22242880 22242901 TGAAGAAGATGATCACGATTCC 58 NA Rattus norvegicus 81 Colec12 ENSRNOG00000016366 ENSRNOT00000065494 2 1 1 80 18 1049938 1049956 GCAGTGGAATGACTTCCAG 59 1049998 1052031 AATATGGATGATGGTACTGCC 58 NA Rattus norvegicus 81 Piwil2 ENSRNOG00000009871 ENSRNOT00000013284 2 1 1 80 15 52043005 52043023 CTCCTGACCACTTTGTGAC 58 52042147 52042961 GGTAGAAATCCACCCACTC 57 NA Rattus norvegicus 81 LOC100359930 ENSRNOG00000028852 ENSRNOT00000049588 1 1 1 82 1 82653588 82653606 CAGCTAGGCTTCAAACCAC 59 82653436 82653542 ATGGCTACCAAGTCCTCTG 59 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947,ENSRNOT00000090393 3 2 2 86 5 118510130 118510151 CTGGAACTTATCAATTGAGCCC 60 118500888 118510086 TTCTTGTTCCATTTGATGGTCC 59 NA Rattus norvegicus 81 Mst1r ENSRNOG00000032618 ENSRNOT00000066104 3 1 1 80 8 116692180 116692552 ACCTGAGATCACTGAGTTCC 59 116692593 116692613 TAGAAGTTGGAGCCACATAGG 59 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 3 2 2 80 18 74473249 74473269 AGTAAACTCTTCATGCCTGTC 58 74471901 74473208 AAGAGACTTCAACAGCTCCA 59 NA Rattus norvegicus 81 Creb3l4 ENSRNOG00000023493 ENSRNOT00000032062 2 1 1 80 2 189601107 189601285 CCAGATAGATCAGTGGAGCC 60 189601046 189601065 TGTCTATGAGCTTCAGAGGG 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083289 1 1 8 80 3 100789003 100815562 GACTTTCATCCGGGATTCC 58 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 RGD1566369 ENSRNOG00000005017 ENSRNOT00000006662 2 1 1 60 17 88140470 88140488 CCAACACTAAGATTGGCCC 59 88140428 88140449 TTCTTATTGTCTCCTCGAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 2 2 2 80 12 15980290 15980308 GGACCTCTGTCCTATCTGC 59 15977434 15980246 GTGTGCAGTCTCTTGTACC 58 NA Rattus norvegicus 81 Mvd ENSRNOG00000013376 ENSRNOT00000018145 2 1 1 84 19 55262791 55263146 TATCCTTGTGGTGAGTGCAG 60 55262726 55262744 CTTGAGCAGGGTACTGGTC 60 NA Rattus norvegicus 81 Cttnbp2 ENSRNOG00000061845 ENSRNOT00000087167 1 1 1 80 4 42951287 42957327 CAGTCAGCAAGTTCAGAGG 58 42951225 42951244 TCCAGACAGAGATAACCCAG 58 NA Rattus norvegicus 81 LOC100911586 ENSRNOG00000046315 ENSRNOT00000074062 3 1 1 60 10 45014988 45015006 ACCTTTGTGTTTCTGACCC 58 45015030 45015048 CATAGGACATGAAGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc2 ENSRNOG00000014527 ENSRNOT00000019467 1 1 1 60 18 32965248 32965266 TCTGAATGACCGCAAAGTG 59 32965289 32965308 CTCTGCTTCTCGTTCTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000066292 1 1 2 74 1 89785903 89785921 TGACAGACGAAGACAAGCA 59 89786709 89786727 GTACCCATCAACACAAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Haus1 ENSRNOG00000046666 ENSRNOT00000073597 1 1 1 80 18 74191650 74191669 CTCCAGAACATGGACTTCCT 59 74191241 74191608 GGATGAAAGTTGCTCCTCTG 59 NA Rattus norvegicus 81 LOC100910318 ENSRNOG00000004419 ENSRNOT00000006006 1 1 1 60 10 37130784 37130802 CATAGCTCATGCTGCTCTG 59 37130742 37130763 GTACATATTGTTGGAGAGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000084281,ENSRNOT00000017927 2 3 3 98 4 100277492 100277736 CCGCCTCAGATAAAGTACAG 58 100277797 100277815 AATCTGCCCATTCAAACCC 58 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 3 1 1 66 15 31642298 31644841 AAACCTCACTCACATCAGGG 60 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC56764 ENSRNOG00000016432 ENSRNOT00000021984 3 1 1 81 2 252505222 252505242 GTAGAGAACATTCAAGGACCA 58 252501286 252505179 CCATCAATTTCCAACCACG 57 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 2 2 2 80 3 8974316 8974810 GATTGACAACGAGACGCTG 59 8974254 8974278 GAAGACAGGATCTGATAATACTGGT 60 NA Rattus norvegicus 81 Tmprss11g ENSRNOG00000029964 ENSRNOT00000060109 3 1 1 80 14 23193079 23193099 AATAAGAAGTTGCAGTCCTCC 58 23193140 23198559 TTGTGCTGCATTCATTTCTC 57 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000087295 1 1 12 81 20 3363757 3364248 CATTCCTGGGTACAGGTCG 60 3364293 3364311 AGCAACTGTATGCGTAGGT 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000090225 1 1 12 60 20 3364217 3364235 ACACATGCTTCATCTCCCT 59 3364257 3364277 TCCTGTAACAAGACCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ac ENSRNOG00000059748 ENSRNOT00000077571 1 1 1 123 17 44794236 44794255 GTAAGGGCAACTATTCGGAG 58 44794341 44794359 GTCTTCTTGTTGTCCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734,ENSRNOT00000073268 2 2 2 80 4 123471682 123472928 GACTCCAGTTATATGTGGTGTC 58 123471623 123471642 CTCCACATATGCAGAAAGGT 58 NA Rattus norvegicus 81 AABR07048064.1 ENSRNOG00000013579 ENSRNOT00000018164 3 1 1 60 5 59912260 59912278 CTATGATGGCATGGTTGGG 58 59912218 59912236 CCATGTGTCAATTGCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpt ENSRNOG00000033915 ENSRNOT00000050556 1 1 1 80 7 117761620 117761712 CCTATCATTTCCGGATGACCA 60 117761754 117761772 TGGCATGGAAGTGACTGAG 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075932 1 1 4 98 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208576670 208576688 GTGACACTTACCCTGGACC 60 NA DesignNoJunction Rattus norvegicus 81 Scamp4 ENSRNOG00000018271 ENSRNOT00000024980 1 1 1 110 7 11972751 11972769 ATTGGGTTCTTTGGGACCA 59 11970850 11972680 CCTGTGTACCTTCACAATAGTG 59 NA Rattus norvegicus 81 Cd2bp2 ENSRNOG00000017201 ENSRNOT00000023285 2 1 1 80 1 198638267 198638287 ATGGCAACTATTTCCTGAACC 59 198638102 198638225 GTTCCTTGATCCTCACCCA 59 NA Rattus norvegicus 81 Tomm40 ENSRNOG00000018556 ENSRNOT00000025281 3 1 1 82 1 80629081 80629100 GCTGTTTCCAGTTCAGATGG 59 80628484 80629037 CTACTGTATGGGTCACCTGG 59 NA Rattus norvegicus 81 Nkain1 ENSRNOG00000011445 ENSRNOT00000056229 3 1 1 81 5 148661193 148662659 CGGTATCTCATCCTGTATGCA 60 148662702 148662720 CAACCTCCAGGTAGAAGCA 59 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 1 2 2 80 13 111068450 111138409 TCATGATGATTGGCTCCCT 59 111138453 111138471 TGGTGTTGGCATACATCTG 58 NA Rattus norvegicus 81 Rbm12 ENSRNOG00000019723 ENSRNOT00000047246 2 1 1 60 3 151641964 151641984 GGTAGTTTAAATGCTCCTCCT 58 151641924 151641943 TAGGAACACTTCCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc29a2 ENSRNOG00000020025 ENSRNOT00000027178 2 1 1 80 1 220404065 220404083 CTACCTGACCAAGAAGCCT 59 220404126 220404946 CCATTCTTCTCATCAGCTCC 58 NA Rattus norvegicus 81 Slc29a2 ENSRNOG00000020025 ENSRNOT00000027178 3 1 1 80 1 220404066 220404084 TACCTGACCAAGAAGCCTC 59 220404127 220404947 CCCATTCTTCTCATCAGCTC 58 NA Rattus norvegicus 81 Vim ENSRNOG00000018087 ENSRNOT00000024430 2 1 1 80 17 80890022 80890040 CACTTCCTCTGGTTGACAC 58 80890084 80890853 CATTGATCACCTGTCCGTC 58 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 3 2 2 80 15 4082978 4082996 GTGGAACTTGGCATTGACC 60 4083039 4083814 CATTGCCGTCCTGTTAAAGG 60 NA Rattus norvegicus 81 LOC100361388 ENSRNOG00000030601 ENSRNOT00000042040 2 1 1 89 3 132282781 132282799 GTTGTCTGCTAAACCTGCT 58 132282710 132282728 TTACCGACATCGACCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 1 2 2 80 19 56031059 56031166 GAATATCTGGCCTGGTTTCTC 59 56031208 56031226 TGCTTGAGGTTGTTGTAGG 58 NA Rattus norvegicus 81 Ccl19 ENSRNOG00000015668 ENSRNOT00000020982 3 1 1 81 5 58181720 58181738 CCATCCCTGGTAACATCGT 59 58181441 58181675 GTGGTGAACACAACAGCAG 60 NA Rattus norvegicus 81 Blmh ENSRNOG00000003563 ENSRNOT00000076686 1 1 1 80 10 63239948 63240268 ACAACGCAGGACTAAATTCG 59 63239887 63239905 TCTGGGCAAGTACGAACTG 60 NA Rattus norvegicus 81 Clns1a ENSRNOG00000012788 ENSRNOT00000017702 2 1 1 80 1 162688878 162689679 GTGATAAGTCAGCATTGGAGG 59 162689721 162689739 AGTCTTCATCCTCAGGGTC 58 NA Rattus norvegicus 81 Cyb5r3 ENSRNOG00000009592 ENSRNOT00000064700 1 1 1 80 7 124031762 124031780 GGTCATTCGTCCCTACACC 60 124030774 124031721 TCCTTGAAGTAAACCTTGACCA 60 NA Rattus norvegicus 81 Cyb5r3 ENSRNOG00000009592 ENSRNOT00000064700 2 1 1 80 7 124031763 124031782 TTGGTCATTCGTCCCTACAC 60 124030776 124031723 CTTGAAGTAAACCTTGACCACC 60 NA Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000063970 3 1 2 157 6 127333668 127333686 CTGATGTCTGTGTCAGCCA 60 127334212 127334320 ACCTCTGTTCCCATGTTGG 60 NA Rattus norvegicus 81 Kcnj13 ENSRNOG00000016057 ENSRNOT00000021507 1 1 1 80 9 94487893 94489992 TTTATCACAGGTGCCTTTGTG 59 94487833 94487853 AACTGCTAAGTCTGTGAATCG 59 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000088484 1 1 2 198 18 79773962 79813617 AATTAAAGGTGCTTGCTGCA 59 79813778 79813796 CTCCTCAGCTCCATCTCAG 59 NA InUTR Rattus norvegicus 81 Taf2 ENSRNOG00000034022 ENSRNOT00000040836 1 1 1 80 7 94712319 94714796 GAATTCTGGTACTGCACATGAC 60 94712260 94712279 GGTCTACTGAGGCCAAAGAG 60 NA Rattus norvegicus 81 LOC680385 ENSRNOG00000011606 ENSRNOT00000015427 2 1 1 60 4 147929937 147929955 TGGAGACTTCAATTTGCCA 57 147929977 147929997 GCCTTCATCCAATTTGATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dchs1 ENSRNOG00000031643 ENSRNOT00000042865 2 1 1 80 1 170600243 170600267 GACCAATTACCTATAGCATTCTCAG 59 170600030 170600206 GAACTGTGATGGTTCCTGTG 59 NA Rattus norvegicus 81 B3galt6 ENSRNOG00000019979 ENSRNOT00000027060 2 1 1 60 5 173424760 173424778 TGCAGCAATCAGTATCTGG 58 173424718 173424737 GTTGCTTCTCCAACATGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911101 ENSRNOG00000005555 ENSRNOT00000007338 3 1 1 60 7 60099240 60099259 AGAGTTATGTGGTGGGAGAC 59 60099282 60099300 CCACTCAGATCCACCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110b ENSRNOG00000009114 ENSRNOT00000012066 3 1 1 60 5 18902344 18902364 GCTAGAATCATCAAGTGGCTG 59 18902386 18902404 GGGACACCTTCTGTGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002623.1 ENSRNOG00000038251 ENSRNOT00000058230 1 1 1 80 1 77782840 77784012 CGTTCTCTGACCTCCTATACC 59 77784053 77784072 GAAATGTTGTTCCAGCTCCC 60 NA Rattus norvegicus 81 Plod3 ENSRNOG00000001417 ENSRNOT00000001921 3 1 1 80 12 22722908 22723060 ACAACAACGAGGTGTACCA 59 22722846 22722867 CTAGCTTTACAGCTGAGAAGTG 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107,ENSRNOT00000086957 2 2 2 80 8 53420539 53420760 GATATTTCAGGCTCACTCAACAC 60 53420800 53420818 AGAGCTGAGCAAACTCCTG 60 NA Rattus norvegicus 81 Homer2 ENSRNOG00000061450 ENSRNOT00000087785 1 1 1 80 1 143475752 143475773 TCACTGTTTCCTACTTCTACGA 59 143463605 143475714 TGTTTATGATTACCTTGGCTCC 59 NA Rattus norvegicus 81 LOC100912070 ENSRNOG00000048407 ENSRNOT00000073438 2 1 1 96 1 91153935 91153953 GTCATCTCTGCAGAAGAGG 57 91154118 91154410 GTAGTAGTTCTTGGCTGACTC 58 NA Rattus norvegicus 81 T ENSRNOG00000012229 ENSRNOT00000016471 2 1 1 88 1 52890700 52890718 AGAGGTACCCGACTCTGAG 60 52889594 52890648 ATTGTCGGCATAGGTTGGA 59 NA Rattus norvegicus 81 Alx3 ENSRNOG00000018290 ENSRNOT00000024611 2 1 1 82 2 210382082 210382101 AAACCCACTACCCTGATGTG 60 210382146 210385446 GAACCAGACCTGTACCCTG 59 NA Rattus norvegicus 81 Slc25a41 ENSRNOG00000048853 ENSRNOT00000074117 1 1 1 80 9 10007597 10007616 GGCAATGGTATAAACGTGCT 59 10007657 10007785 GAAGAAATTCCTGGACTGCTC 59 NA Rattus norvegicus 81 Cpne3 ENSRNOG00000006298 ENSRNOT00000008281 1 1 1 80 5 33529299 33530538 ACAGTTCCAGAATGCTCCA 59 33529237 33529255 TTGAAGTAACCCACCACCT 59 NA Rattus norvegicus 81 Ptges2 ENSRNOG00000014050 ENSRNOT00000019184 3 1 1 80 3 11426108 11426130 AGGACCGAGATTAAATTCTCCTC 60 11426170 11428771 ATTGAGCTGTTGCAAGCTG 60 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 3 2 2 98 13 80465784 80465807 GATGATTCAGATGAAGAAGAGGAC 59 80468767 80472967 CACCTGATTCTGAACATGCT 58 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000072110 1 1 3 142 2 144861597 144862510 GAACTCATAGAAGTTAATGGAACCC 60 144866040 144866059 TCCAAATCATCCGACGAGAG 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 2 3 3 80 10 109712171 109712192 TTTGTTTGAGAAGTGGAAGCTC 60 109712233 109713151 CAGACCAGCTCAGTAGGTG 60 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860,ENSRNOT00000065431 1 2 2 80 19 57101886 57101907 CAAGCTCTATTTCGAAGAGCTG 60 57101948 57103647 CGGAATGAGATCTCCAGGT 59 NA Rattus norvegicus 81 Dnaja1 ENSRNOG00000007029 ENSRNOT00000010061 2 1 1 83 5 57032686 57034458 GACAAATGTGAAGGCCGAG 59 57034505 57034523 AATCCTGATCTGCATGCCA 60 NA Rattus norvegicus 81 RGD1562532 ENSRNOG00000022890 ENSRNOT00000030112 3 1 1 80 5 122779186 122786231 CAAAGTATCCAATGCTGACCAG 60 122779127 122779148 CTACTAGAATCTGCTGAGTGGT 59 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 1 1 1 60 7 75286750 75286769 CACACTCGAAATTGGAGACC 59 75281150 75286727 GAATGGCTTTCCATGGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Acsm3 ENSRNOG00000032246 ENSRNOT00000020039 1 1 1 80 1 189530935 189530955 CCTGAAGTGATGGAACAATGG 59 189530997 189532005 GATCAGCACCGTTTCTGTC 59 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 3 2 2 121 7 11436251 11436271 ATTTGCGAGAAGGTGATTCAG 59 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 1 2 2 80 5 169553004 169553025 TGATGCTACTTCAGAAGATGCT 60 169553065 169554075 ACATCTTGGTCATCTGGGAG 59 NA Rattus norvegicus 81 LOC100909524 ENSRNOG00000048988 ENSRNOT00000075378 1 1 1 80 6 129005748 129005766 AGGATCTTCTCCACCTCAG 58 129004589 129005704 CTGTTGTACGACCTTGGAC 58 NA Rattus norvegicus 81 Tspan18 ENSRNOG00000008758 ENSRNOT00000011650 1 1 1 80 3 82100852 82100870 GTGATCCTCAACACCTTCG 58 82099570 82100808 GAGGAAGAGCTCAATAGCC 57 NA Rattus norvegicus 81 Tspan18 ENSRNOG00000008758 ENSRNOT00000011650 2 1 1 80 3 82104091 82104935 TTCCGTCATGATCACATTTGG 59 82104031 82104049 GTTAGCAGCCGAAACACTG 60 NA Rattus norvegicus 81 Olr830 ENSRNOG00000013367 ENSRNOT00000017843 1 1 1 60 4 148665145 148665164 CCGATGTACTTCTTCCTCAG 58 148665186 148665205 TAACCGTGGAGATGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028049.1 ENSRNOG00000048452 ENSRNOT00000075683 3 1 1 60 17 54808325 54808343 GTCTCCTCAGCTTCTGACC 60 54808283 54808302 GAACCTGTCTGAGACTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgta ENSRNOG00000019891 ENSRNOT00000026960 1 1 1 82 7 11530182 11530200 CCATCATCCAGTTCCTGCA 60 11530246 11531492 CTGGATGGCAACCTCTAGG 60 NA Rattus norvegicus 81 Serac1 ENSRNOG00000017889 ENSRNOT00000060527 2 1 1 80 1 46956804 46956822 TGGACCGAGAAACTGTGAG 59 46952030 46956760 TAATGGGCTGACTTGTCCG 60 NA Rattus norvegicus 81 AABR07017895.1 ENSRNOG00000049928 ENSRNOT00000071598 2 1 1 73 15 32324857 32324875 TTACTCCTAGGCCTTCACC 58 32325049 32325067 ATTTGTTTGACCTGCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 2 4 8 85 6 128078984 128079005 GCATCAAAGAAGTCTTCTCCAC 60 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 3 2 2 83 3 2644814 2644935 AATTGTATTGGGTGCAACCC 59 2644980 2644999 GAGCCAGATTACCATGAGTG 58 NA Rattus norvegicus 81 Unc93a ENSRNOG00000047027 ENSRNOT00000073581 1 1 1 80 1 53580950 53582279 GAGTATACCAAGTCTTATGTGACCT 60 53580894 53580912 AGTCATAGCCGAGAAGCAG 59 NA Rattus norvegicus 81 Actl7b ENSRNOG00000016621 ENSRNOT00000022291 2 1 1 60 5 73493462 73493480 GAGACCTTTGGCATTCCTG 59 73493420 73493440 ATGAGTAGATGGACAGTAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565894 ENSRNOG00000050226 ENSRNOT00000015408 2 1 1 60 18 59480033 59480054 CCACATCAGAGTACATTTGTCC 59 59480073 59480093 GAGCTTGTTTGGTGAATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 2 2 2 84 2 208398702 208398720 CTCCTCATCAAGAGCTGCA 60 208398123 208398406 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274,ENSRNOT00000083830 2 2 2 84 7 125952982 125955358 AGAAGTAATGGAAGTCCTGCA 59 125955404 125955422 TATCTGGTCACGCAGTGTC 60 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 3 2 2 80 8 94841371 94841392 TGACTATACCTGGGAATACGAG 59 94841431 94850098 ACGATGGAATATTTGTGAGCC 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155,ENSRNOT00000022731 1 2 2 81 2 208620094 208621480 GATTCTTACCCTGGCCCTG 60 208620031 208620052 GAGATCCAAATTTCATTGGCCA 60 NA Rattus norvegicus 81 Bcorl1 ENSRNOG00000005076 ENSRNOT00000006805 3 1 1 80 X 135204549 135209820 GGAGAGCAGATTCAAAGGC 59 135209864 135209882 AGAGAAGGTCCCTGTTCCT 60 NA Rattus norvegicus 81 AABR07071968.1 ENSRNOG00000033924 ENSRNOT00000050823 3 1 1 60 1 178367652 178367672 AACAAGAACAAAGGCATCACC 60 178367612 178367632 TGGGAATCTCCAAATACTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alpi ENSRNOG00000030020 ENSRNOT00000026190 3 1 1 80 9 94199090 94199195 ACCTCTTTGTAGAAGGAGGTC 59 94199030 94199048 ACATGACAGCCTCAGTCAG 59 NA Rattus norvegicus 81 Fhdc1 ENSRNOG00000024594 ENSRNOT00000066477 2 1 1 80 2 183461079 183461097 GCCCAGAAGCATAATACCA 57 183458923 183461038 ATCCAGAGATAATCTCGATGTC 57 NA Rattus norvegicus 81 Trim40 ENSRNOG00000000783 ENSRNOT00000029070 3 1 1 85 20 2170004 2176712 CACTACAAGGAAAGACTCAATCG 60 2176756 2176775 TTCTCTTCCTGAGCCTTCAG 59 NA Rattus norvegicus 81 Rbbp5 ENSRNOG00000021289 ENSRNOT00000036110 1 1 1 80 13 49264353 49264371 GTAACAACGGGAACAAGCA 59 49264412 49265333 TGTGTTAATCAGGAAGCAACTC 59 NA Rattus norvegicus 81 AC125991.2 ENSRNOG00000052402 ENSRNOT00000092205 3 1 1 60 3 78983140 78983158 GGACCCAATACCATTGACC 58 78983098 78983118 AGCAGGCAAGTTTAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015015.2 ENSRNOG00000057505 ENSRNOT00000059247 1 1 1 60 14 45376105 45376123 CCAAGTCCAAGAACCACAC 59 45376063 45376083 GGTTTCTTGATGCCATTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r87 ENSRNOG00000058994 ENSRNOT00000084775 1 1 1 60 4 88328788 88328808 TGGACTTCATCATCTCATCCA 59 88328830 88328848 GTCAGGATAACAGGGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r87 ENSRNOG00000058994 ENSRNOT00000084775 2 1 1 60 4 88328794 88328817 TCATCATCTCATCCACATCTATCC 60 88328832 88328854 TGAATAGTCAGGATAACAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf114 ENSRNOG00000060821 ENSRNOT00000086459 1 1 1 80 3 164256723 164258185 GATACCAAGTCTGTGGTTTGTC 59 164258226 164258244 CTCCATGAAGTTGGCACTG 59 NA Rattus norvegicus 81 Baz1b ENSRNOG00000001453 ENSRNOT00000001975 2 1 1 80 12 24518546 24524570 GTGACTTTGAGGTAGGAAAGG 58 24518486 24518506 CCTCTTCATCAACTTTCTCCA 58 NA Rattus norvegicus 81 Gnrhr ENSRNOG00000002011 ENSRNOT00000002755 2 1 1 80 14 23493744 23493763 CATGCTAATCTGCAATGCCA 59 23493805 23496669 TGATTCAGCTGTAGTTTGCG 59 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346,ENSRNOT00000002557 2 2 2 80 11 87428137 87428156 CTCACAGAGCTTAACCTGAG 58 87427131 87428094 TATATTTGCCTCCAGGCCT 58 NA Rattus norvegicus 81 Apbb1ip ENSRNOG00000017803 ENSRNOT00000024272 1 1 1 80 17 90130044 90131506 CCGAATTGCAAATCGAGAG 57 90129982 90130000 TCTCTGTGTCTCTTGTCCA 58 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852,ENSRNOT00000029046 1 2 2 80 X 70372222 70373119 CTCACAGTCAAGATGGTAGG 58 70373161 70373180 TTACTGGGAAGTAGCTTTGG 57 NA Rattus norvegicus 81 Myh7 ENSRNOG00000016983 ENSRNOT00000024186 1 1 1 80 15 33638900 33639074 GGAACTTCGACAAGATCCTG 58 33638839 33638857 CCTCCTTCTGGGAAGACTC 59 NA Rattus norvegicus 81 LOC103690304 ENSRNOG00000053992 ENSRNOT00000082085 2 1 1 60 15 27652909 27652930 GCAGTAATGGCTTATGATAGGT 58 27652870 27652891 TGATGACAGGGTAATGTAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565713 ENSRNOG00000039060 ENSRNOT00000048255 2 1 1 60 15 34584535 34584555 TGTAAACACGCAAGTTAAGGG 59 34584577 34584595 TTGCTCAATCCTCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000042418 2 1 2 80 4 147924641 147948465 CAGGAAGAGCGATATAGATGTG 58 147924582 147924602 GTTCAGGATCTCATTCTGGTG 59 NA Rattus norvegicus 81 Mir196c ENSRNOG00000035510 ENSRNOT00000053633 1 1 1 60 10 84113592 84113610 TAGTTTCGTGTTGTTGGGC 59 84113634 84113652 AGTGAATCAGGTGGTTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd5 ENSRNOG00000018809 ENSRNOT00000025433 1 1 1 80 3 13929807 13933299 CCAGAACAATCGGGAACAG 59 13929745 13929764 GCCAAATGAATTGGTTCCAC 58 NA Rattus norvegicus 81 Sycp3 ENSRNOG00000005270 ENSRNOT00000007088 2 1 1 81 7 29037192 29038252 CAACAAGAGGAAATACAGAAGC 58 29038294 29038312 GCATATCCAGTTCCCACTG 58 NA Rattus norvegicus 81 Ist1 ENSRNOG00000015144 ENSRNOT00000020365 1 1 1 82 19 41983221 41983242 CAAATACAGCAAGGAATATGGC 58 41983282 41983603 CACTCAGTTTATGCATTAGCCT 59 NA Rattus norvegicus 81 Gstt1 ENSRNOG00000049771 ENSRNOT00000001669 1 1 1 80 20 13806056 13813876 GGCATAAGGTGATGTTCCC 58 13813919 13813938 CATCCAGATCTGCCAATGTG 59 NA Rattus norvegicus 81 AC139873.4 ENSRNOG00000061643 ENSRNOT00000091724 1 1 1 60 3 73896495 73896513 TATCCTCCCTTCTGGTGGT 59 73896453 73896473 ATTCTGAGAATGGCTATGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 1 2 2 80 4 6297916 6298024 CCTTTGGGAAGAACAATCGG 59 6297855 6297873 AGCCCTTCTGATCCATCTG 59 NA Rattus norvegicus 81 AABR07017772.1 ENSRNOG00000049108 ENSRNOT00000072686 3 1 1 93 15 30910075 30910188 TTTCTCCTGAGAGTTGCCC 59 30910243 30910263 ACTTGCATTTCAACTGCAGAG 60 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 1 2 2 80 2 198007496 198007514 GATGAGGGCTTAGCATCAC 58 198007557 198007804 GGACAGACCAGAAACATAGG 58 NA Rattus norvegicus 81 Rn60_X_0750.2 ENSRNOG00000051310 ENSRNOT00000076781 3 1 1 60 X 74188563 74188581 GCTTCCCAAGCTCTATGTC 58 74188604 74188623 CACCTTGCTATGAATGGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata18 ENSRNOG00000002120 ENSRNOT00000002899 2 1 1 80 14 37089346 37091388 GTGTCAATGATGTGATCCGTG 60 37089286 37089304 CAGTGAGGAGGCAGAAGTC 60 NA Rattus norvegicus 81 Olr321 ENSRNOG00000021065 ENSRNOT00000028599 1 1 1 60 1 228475048 228475068 CTAGACATCTGCTTCTCCTCC 60 228475008 228475028 TCTTTGTTAGAAGGTCCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp4 ENSRNOG00000011678 ENSRNOT00000015605 1 1 1 80 15 61764538 61768086 TTGCAGTCAGACATTTCAGAG 59 61764478 61764499 TTTCTGTTGATTTGCTGTAGGG 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000030902 ENSRNOT00000066349 1 1 1 60 4 162497619 162497639 TCTCATGAAATGGAAGGACTC 58 162497579 162497598 CATATTCACCTCCTTTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017,ENSRNOT00000087305 2 2 2 80 13 109459853 109459871 AGGACCTGCTACAGTTCTC 58 109457302 109459812 TTATCCCACCCTTAAAGAAGTC 58 NA Rattus norvegicus 81 Rps29 ENSRNOG00000004196 ENSRNOT00000005577 2 1 1 84 6 91456338 91456356 CTGATCCGTAAATACGGGC 58 91455442 91456293 CTTAGTCCAACTTAATGAAGCC 57 NA Rattus norvegicus 81 Tufm ENSRNOG00000018604 ENSRNOT00000025203 2 1 1 80 1 197906115 197906133 GATTTGAGGCGTGGTTTGG 60 197906175 197906299 GAGGATATAAACCTGGGCCTC 60 NA Rattus norvegicus 81 Tufm ENSRNOG00000018604 ENSRNOT00000025203 3 1 1 80 1 197905473 197905610 CTCTTGAGCAACGTGATCC 59 197905652 197905672 GTACTGGGATGTAAGTGTCCA 59 NA Rattus norvegicus 81 Mir30b ENSRNOG00000053467 ENSRNOT00000079419 3 1 1 60 7 109282708 109282728 AACATCCTACACTCAGCTGTC 60 109282668 109282687 ACAGCTGACGTAAACATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnna2 ENSRNOG00000006003 ENSRNOT00000007971 3 1 1 80 4 107943908 107964586 TGATCAGGACTCCAGAAGAG 58 107943847 107943865 GAACACTTGTCCGACTACG 58 NA Rattus norvegicus 81 Mif ENSRNOG00000006589 ENSRNOT00000008608 3 1 1 74 20 13732611 13732629 CAACTACAGCAAGCTGCTG 60 13732666 13732807 TAGTTGATGTAGACCCGGTC 59 NA DesignRelaxed Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195,ENSRNOT00000084737 3 2 2 80 5 159693112 159693131 GAAACATTCAGTGGGAGAGC 59 159693174 159702401 AATAGCATGCACTGTGGGA 59 NA Rattus norvegicus 81 Ptprcap ENSRNOG00000021724 ENSRNOT00000029607 2 1 1 117 1 219404000 219405342 CATCGGATCAATGGCTCTG 59 219405423 219405441 GATGGTGACCACATTGGAG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Olr1581 ENSRNOG00000046418 ENSRNOT00000045565 3 1 1 60 13 91692913 91692932 GCCACTTTCCTATGTGTCTC 58 91692872 91692894 CTGAGGCAATCTTGAGAATAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 1 1 1 60 12 24723037 24723175 CTTAGCTCGGTTGTCAAGG 58 24722995 24723013 CCTCCACCAGGTTAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Spam1 ENSRNOG00000007231 ENSRNOT00000009537 1 1 1 80 4 52200612 52201462 ATACCTTCTAGAGGATGATCTTGTG 60 52201494 52201518 GCATCCCATATTATAATTCCAGAGG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021114,ENSRNOT00000021229,ENSRNOT00000021347,ENSRNOT00000021226 1 5 5 80 1 259437308 259437430 TGAAGACACAAAGTCTCCC 57 259437246 259437264 CTCTTGACCACTTTCTCCC 58 NA Rattus norvegicus 81 AC123280.1 ENSRNOG00000033141 ENSRNOT00000049690 1 1 1 91 15 61875344 61875382 CAGGATCATTTCAGGCATCC 59 61875272 61875290 GAGCTACACTGTTTCCGGT 60 NA Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000002862 2 1 2 80 14 33550967 33553183 TTTCAGAAGATTCAGACGGGA 59 33550907 33550927 GCATGATGTAAGCCATTTGAC 58 NA Rattus norvegicus 81 Vps8 ENSRNOG00000001764 ENSRNOT00000029255 1 1 1 80 11 83180363 83201588 CTTGATCCAAGGGAACGTG 59 83180301 83180320 GAGCTCAATGAACTGCTCTG 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000084057,ENSRNOT00000007602 2 2 3 139 6 131888522 131888540 ATTACTTCACCTCTGCGTG 58 131838878 131888420 TCATCTTTACACTGGCATCC 58 NA Rattus norvegicus 81 LOC100361642 ENSRNOG00000029978 ENSRNOT00000050333 3 1 1 60 1 168830704 168830725 TCTCATTCTCATCAAATGCAGG 59 168830745 168830764 GTATGAGTGCGACACAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nin ENSRNOG00000005540 ENSRNOT00000007529 2 1 1 80 6 92518531 92518549 TATGCTTGGAAGATGTGGG 57 92506547 92518488 ATTGGTCGAAATGTACCCTG 58 NA Rattus norvegicus 81 Chic1 ENSRNOG00000037919 ENSRNOT00000076490 1 1 1 80 X 74201231 74201249 AGTGAGCGAGGAGAATCTG 59 74201289 74211361 GTATTTATCACAGTGATGTGGCC 60 NA Rattus norvegicus 81 Ccdc116 ENSRNOG00000001860 ENSRNOT00000041557 2 1 1 80 11 88096917 88096935 ACCCATGAGGGACAAACTC 59 88096976 88097101 TGATTCAGAACTTTCCCTTTGC 60 NA Rattus norvegicus 81 Cdh15 ENSRNOG00000027954 ENSRNOT00000033352 1 1 1 80 19 55687940 55687958 CTTCAGGAGGATCTTCGGG 59 55688002 55688154 TATGTCGTAGGCATCCTGG 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669,ENSRNOT00000003526 1 2 2 80 17 90728302 90728320 TCGCCCTTTGAATCCTCTG 60 90719966 90723711 AGACACAAACCTTCTAGCCA 59 NA Rattus norvegicus 81 Fam43b ENSRNOG00000043113 ENSRNOT00000068065 3 1 1 146 5 156811443 156811461 GAGCTTAACAAGGAGGACC 58 156811315 156811333 CAGTTTCATCTTCGTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp1 ENSRNOG00000003084 ENSRNOT00000004232 3 1 1 80 13 98877122 98877143 ACATTGTGAAAGGGACTAACTC 58 98877183 98877713 ACCGGAAGATCCAATACCTG 59 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 3 2 2 80 11 69018520 69019952 GCTAGAGTCTGAAGAAGATGTC 58 69018461 69018481 GAGAAGTAGGGCTTTACATGG 58 NA Rattus norvegicus 81 Avil ENSRNOG00000050419 ENSRNOT00000073237 3 1 1 80 7 70300016 70300035 TACGTATGGAAAGGCAAAGG 58 70300075 70300788 CTTCATCTTGATGAAATCCAGG 57 NA Rattus norvegicus 81 Vom1r27 ENSRNOG00000049847 ENSRNOT00000072292 2 1 1 60 1 68529568 68529587 CCAGTGTCTCCATGATTGTC 58 68529609 68529628 CTGTGTATGTGTTGAGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r43 ENSRNOG00000013563 ENSRNOT00000052226 1 1 1 80 1 149511052 149512026 GATTCTTTGCAGGTCCTCTC 58 149510991 149511012 TTTCTGATTCAGGTTCACTAGG 58 NA Rattus norvegicus 81 Olr3 ENSRNOG00000015254 ENSRNOT00000020448 3 1 1 60 1 70437890 70437908 CTCTTCCTAGCAGCCTTCC 60 70437932 70437950 TGGTGAGCAAGACGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yy1 ENSRNOG00000004339 ENSRNOT00000005743 1 1 1 80 6 132726024 132726675 CCCTTTCAGTGCACATTCG 60 132726719 132726737 GGTATGGATTCGCACATGC 60 NA Rattus norvegicus 81 Olr1612 ENSRNOG00000012545 ENSRNOT00000016727 1 1 1 60 15 27139863 27139881 TTATGCTCGCCCATTTGAC 59 27139821 27139842 CACAGTATGAAACACAGATACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000077052,ENSRNOT00000087355 1 3 4 104 9 111208730 111208749 TCCTATATGGACCTCCTCAG 57 111207018 111207037 TTACAATCTCCTTTGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 RGD1565183 ENSRNOG00000037673 ENSRNOT00000057158 3 1 1 60 1 84573777 84573795 ATCAACAAGAATGCTCGGG 58 84573816 84573837 ACTTGTTCTTTCGGATCATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdrt4 ENSRNOG00000003294 ENSRNOT00000004392 1 1 1 84 10 49368352 49399760 CTACTCAGTAAGACTCACGGA 59 49399806 49399824 AAATGTGACATAGGCTGGC 58 NA Rattus norvegicus 81 Sstr4 ENSRNOG00000004641 ENSRNOT00000006181 3 1 1 60 3 142740670 142740688 AATCTGTTTGTCACCAGCC 58 142740711 142740730 CATAGCTGAGGATGAGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir488 ENSRNOG00000036265 ENSRNOT00000054388 1 1 1 61 13 76198603 76198621 CCCAGATAATGGCACTCTC 57 76198646 76198664 TCTGACCAAGAAACAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr834 ENSRNOG00000015646 ENSRNOT00000020943 1 1 1 60 5 59207514 59207532 ACTTCACCTGTGAGATCCT 58 59207472 59207490 TCGCTGACTGATGTATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb2 ENSRNOG00000051619 ENSRNOT00000085517 3 1 1 80 6 127212859 127215204 CAAGGAGAAGGCAGAACCT 59 127212797 127212816 ATCCGGTATTTCCCTATGGC 60 NA Rattus norvegicus 81 Olr377 ENSRNOG00000013198 ENSRNOT00000017615 3 1 1 60 1 230649540 230649559 GCCAACCACTGCTTTATGTC 60 230649499 230649519 CCAGTTACCAATCCTACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf40 ENSRNOG00000018840 ENSRNOT00000025499 2 1 1 80 1 199040045 199040154 TCGTTGGAGTACTCTGAGC 59 199040198 199040216 GTCCTCCACTGTTGTCTCC 60 NA Rattus norvegicus 81 Tp73 ENSRNOG00000024707 ENSRNOT00000055398 1 1 1 80 5 171366703 171366721 CCCAATATGTGGATGACCC 58 171363899 171366661 TGAATTCTGTTCCTACCTGTG 58 NA Rattus norvegicus 81 Tmem8c ENSRNOG00000006142 ENSRNOT00000008327 2 1 1 95 3 5608938 5609326 TCTTTGAGGAATGGGATTACAC 58 5608864 5608882 CCTTCTTGTTGACCTTGGG 58 NA InUTR Rattus norvegicus 81 Gpr183 ENSRNOG00000025094 ENSRNOT00000034560 3 1 1 81 15 108366168 108376175 TCTGATACTAACTCTGACCACTG 59 108366109 108366128 GTTATTGCCGTGAGAAGCTG 60 NA InUTR Rattus norvegicus 81 Cdca3 ENSRNOG00000015529 ENSRNOT00000020803 2 1 1 80 4 157349643 157350312 AAGATCAGTGGTCCAGACTC 59 157350355 157350373 TTCTGTCTCGGACACTTCG 60 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 1 2 2 80 1 74978364 74978383 TTATGGGACCGAATTTGTGG 58 74978423 74985457 AGGAAATCTGAAGGAAATGAGG 58 NA Rattus norvegicus 81 Nckipsd ENSRNOG00000031816 ENSRNOT00000047482 3 1 1 82 8 117608113 117608131 GAAGCTCTGTTATTCCGCC 59 117608177 117608379 CCAGGTGTTCATAGTGTGC 59 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 3 2 2 80 1 80096282 80097762 TGATGACATCAAATGTCTGGC 59 80097804 80097822 CCTTCCTTTGTGGTTCCTG 58 NA Rattus norvegicus 81 Cpxm2 ENSRNOG00000015902 ENSRNOT00000051853 1 1 1 80 1 204078160 204078179 ACGTAATGAGATGACCACCA 59 204067168 204078117 ACAACCTTCATCAACTGGC 58 NA Rattus norvegicus 81 Clmn ENSRNOG00000011044 ENSRNOT00000065529 2 1 1 80 6 128489131 128489149 CTAGAGAAGGCATTCCGCA 60 128487378 128489090 CATGTCAACCATGATGTCTTCC 60 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796,ENSRNOT00000019245 1 2 2 80 1 114531377 114531483 AAATGCTCGCTCATTAAGACTC 59 114531523 114531542 TCTCAAGCGTTCAATGACAG 59 NA Rattus norvegicus 81 RGD1304694 ENSRNOG00000031269 ENSRNOT00000042070 3 1 1 80 7 125859273 125859294 AGCTGATGGAAATTTCCTTCTC 59 125858888 125859235 TCCAGGATGTCTGTTAAGATCC 59 NA Rattus norvegicus 81 RGD1565912 ENSRNOG00000029600 ENSRNOT00000043909 1 1 1 60 5 72321272 72321294 GTAATCACTATCATGCAGAACCC 59 72321234 72321252 CATCCCTCACACCCTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 3 3 3 80 18 70713730 70713751 TCATTCTGGTTATCCAACACCT 60 70713790 70716119 GTTCTGTGTCATGAAACCCTC 59 NA Rattus norvegicus 81 Dnajc22 ENSRNOG00000053498 ENSRNOT00000087932 3 1 1 62 7 140784263 140784281 GATGAGAAACGTCAGCTGG 59 140786605 140786623 TTCTTCATTGGTGGCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Senp17 ENSRNOG00000030159 ENSRNOT00000043708 1 1 1 89 4 161090340 161090358 CAAACATCCTGGACAGTGG 59 160865751 160865769 TTTCTTGCTCTGGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Dpep1 ENSRNOG00000015880 ENSRNOT00000021397 3 1 1 80 19 55996616 55996634 CCGACAATTGGCTAGTGGA 60 55996678 55996962 CATTCAGCACAAGCTTCCC 60 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000056281 ENSRNOT00000083417 1 1 1 60 17 44839800 44839818 TTGAGGACACCAACCTGTG 60 44839758 44839777 ATATCCTTGGGCATGATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 1 2 2 80 9 100286255 100286274 GTACTCTGGCTCTCAGAAGG 59 100286316 100287253 ACTTTGGATTTGGCCTTGTC 59 NA Rattus norvegicus 81 Pdpr ENSRNOG00000022593 ENSRNOT00000038452 3 1 1 80 19 43118961 43118981 TGGCATGCTCAATGAATATGG 59 43118275 43118921 GAGATCATGAAGAAACTGCGT 59 NA Rattus norvegicus 81 Mir3570 ENSRNOG00000035494 ENSRNOT00000053617 3 1 1 61 13 54952797 54952816 GTACAATCAACGGTCGATGG 59 54952755 54952773 GAACATTCAACGCTGTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528,ENSRNOT00000046854,ENSRNOT00000087320 2 3 3 83 13 51035577 51037791 CAGGAGATCACAGAAGCCC 60 51037838 51037856 GTTGACAGACTCTCCCACC 60 NA Rattus norvegicus 81 AABR07027451.1 ENSRNOG00000046284 ENSRNOT00000074147 2 1 1 60 17 31813483 31813501 AGGGACAGATTTCACCCTC 59 31813441 31813463 GTAATAATCTCCCAAGTCCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr59 ENSRNOG00000018967 ENSRNOT00000047179 2 1 1 80 19 43691946 43694128 CATCTGGGATATTAAAGACACAAGG 60 43690644 43690664 TTATTCCACTTGACCTGGGAG 60 NA Rattus norvegicus 81 Slc45a3 ENSRNOG00000007591 ENSRNOT00000010242 3 1 1 80 13 48762491 48764600 AGAGAAGCAGGTGTTCCTG 59 48764644 48764662 AAGAAGCTGGTTGTTTGGC 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000090402,ENSRNOT00000089305 1 3 3 80 1 87079364 87079382 GGAGACCACAGACACAGAC 60 87079191 87079322 GCAGTGATGAAGTTCTTGTCC 60 NA Rattus norvegicus 81 Cct5 ENSRNOG00000011632 ENSRNOT00000015886 2 1 1 80 2 84669301 84669320 AAGTCCGAGCTAGACAAGTG 60 84667808 84669260 ACTGCATATCATTACTGCCCT 59 NA Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 1 2 2 80 14 37116685 37120547 GTCATCAACCTGCTTATTACAC 58 37120587 37120606 ATGAAACTCCAAGCTGTCAC 59 NA Rattus norvegicus 81 Ctxn3 ENSRNOG00000022957 ENSRNOT00000037529 2 1 1 60 18 52550987 52551006 TCTAGACCCATATCGGAGCA 60 52551029 52551047 CTCTAGACCTTCAAGCCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dsel ENSRNOG00000032307 ENSRNOT00000043890 2 1 1 60 13 1943995 1944013 GCAAAGTGGACAAGGACAG 59 1943953 1943974 GATGCCCTTCGGAAATAATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrg1 ENSRNOG00000014918 ENSRNOT00000020094 2 1 1 80 4 155051340 155051363 CTATCTACTCAACATTAGAGCTGC 59 155048268 155051302 GGTGTAAGACAGCTTTGACC 59 NA Rattus norvegicus 81 Vom1r66 ENSRNOG00000051995 ENSRNOT00000090182 3 1 1 60 4 87516716 87516735 CCGGTGAACAACATTGTCAG 60 87516754 87516776 GAAACACATCTCTAGAAGTTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 2 2 2 103 19 44094842 44094863 CCCTCAGACATCACAAATATGG 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Ffar1 ENSRNOG00000024009 ENSRNOT00000028533 2 1 1 60 1 89308683 89308701 CTGGAGGAGCACTTCTCAC 60 89308641 89308662 GCCACATTGGAAGCATTATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000078372,ENSRNOT00000029634 3 3 3 80 8 13874548 13875077 TGCTACAACTGAGGGATCTG 59 13874487 13874508 AGATCAGTATGTTGGCTTTCCT 60 NA Rattus norvegicus 81 Med15 ENSRNOG00000001877 ENSRNOT00000002568 1 1 1 80 11 87604369 87604388 TGGCCCACAGTAAATCTAGC 60 87590995 87604329 CAAGGGAAAGATATTCATCCCG 59 NA Rattus norvegicus 81 Ercc2 ENSRNOG00000017753 ENSRNOT00000024246 2 1 1 80 1 80304810 80304913 GAAGTACCAAGAGGCATGTG 59 80304953 80304974 TCAATCCCTTCTGATACTTTGC 59 NA Rattus norvegicus 81 Cdk5rap1 ENSRNOG00000015696 ENSRNOT00000021418 3 1 1 80 3 149853572 149853592 CATCTGTAAGCAGATCCACCT 60 149851768 149853532 TCTCTTGAATATCCTCTCCGC 59 NA Rattus norvegicus 81 Magoh ENSRNOG00000012778 ENSRNOT00000017422 3 1 1 80 5 127484225 127484243 GACGACAGTGAGATCACCA 59 127484286 127485281 GACAATTTCGAGTTCCTGCC 60 NA Rattus norvegicus 81 Olr1609 ENSRNOG00000012526 ENSRNOT00000016702 2 1 1 60 15 27032347 27032368 TAATTCTGTTCACTGTCCTGTC 58 27032308 27032327 CTGAGAAGGAAGAACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640,ENSRNOT00000070873 2 2 2 80 3 5537228 5538070 TAGAGAAGTGGTGCTCTAAGG 59 5538111 5538130 TAGACCAGTGTCCATGTACC 59 NA Rattus norvegicus 81 Vars2 ENSRNOG00000000833 ENSRNOT00000091232 1 1 1 80 20 3598488 3598507 TACAGAAGCAGCTTGATGAC 58 3598550 3598656 GGAGGGAGGAAATCCTCTG 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 3 1 2 145 2 86474439 86475031 AGGACCTTCTGTCATTTACAG 58 86473684 86474333 CTTAGAGAAAGCAAGACCCA 57 NA Rattus norvegicus 81 Nr6a1 ENSRNOG00000013232 ENSRNOT00000018751 1 1 1 80 3 23046633 23046652 CAGCAAGCAGATCTTTGGAG 59 23037283 23046592 TCACTAAATCTGTGCAGTTCC 58 NA Rattus norvegicus 81 AABR07034742.1 ENSRNOG00000001893 ENSRNOT00000002599 2 1 1 60 11 86421672 86421690 TACCTTCCTCTCACTGCCT 60 86421712 86421732 GTGAAAGACCACCATGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde8a ENSRNOG00000019005 ENSRNOT00000025797 1 1 1 80 1 143140700 143140719 GGCAAGCATAAAGACAGGAG 59 143140760 143143068 TCTCTGATTGGAAACTTCGCT 60 NA Rattus norvegicus 81 AABR07054265.1 ENSRNOG00000050729 ENSRNOT00000075429 1 1 1 80 3 145810754 145810775 GGATCCTTCTCAGAAGAGTCTC 60 145810488 145810714 TCCCAAACGTAGCCTATAGC 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 3 1 1 62 20 3791764 3791784 CCCTTCATTTCCTGTACCTG 58 3791717 3791736 TAGGTTTCCATGTTGGAGTC 57 NA DesignNoJunction Rattus norvegicus 81 Klre1 ENSRNOG00000058714 ENSRNOT00000084823 2 1 1 80 4 163351753 163351771 TAGTGTGCTCTTTGTGGTC 57 163351813 163352103 TCAGAAGATAACCTTGTGGTG 58 NA Rattus norvegicus 81 Pramef8 ENSRNOG00000027278 ENSRNOT00000037875 2 1 1 85 5 162195613 162196451 GTTGTTCAGGTACCTGAAGAC 59 162196498 162196516 GGGACAAGGAACTCAAGTC 58 NA Rattus norvegicus 81 Fam228b ENSRNOG00000049615 ENSRNOT00000072340 3 1 1 81 6 30038823 30038841 CGTTTCCCAAGCTCAAGAG 59 30038881 30043465 GTATCTTCTTTAGCTAAAGCCTCC 59 NA Rattus norvegicus 81 Podxl2 ENSRNOG00000016255 ENSRNOT00000021826 1 1 1 80 4 120807514 120807534 CCACAGTACTTCTGGGAAGAG 60 120793687 120807473 GTCTGGGAAGACGTAGTCTG 60 NA Rattus norvegicus 81 Galnt15 ENSRNOG00000019718 ENSRNOT00000065618 2 1 1 80 16 8174619 8174637 GATTCTGCAGAACTGCACC 59 8174680 8177714 TGGATGATCAGTCCATCCTC 59 NA Rattus norvegicus 81 Rnf151 ENSRNOG00000014127 ENSRNOT00000018964 1 1 1 119 10 14084379 14084791 AAGTCAAGTGCAAGAACGC 59 14084278 14084296 CAGTGCAACCCTCATTTGG 59 NA Rattus norvegicus 81 Ncdn ENSRNOG00000011751 ENSRNOT00000016230 1 1 1 83 5 144772317 144772335 AAGACTGCTTCTAGCTGCC 60 144770963 144772270 GTTCCTTGGAGAGCTGGAG 60 NA Rattus norvegicus 81 LOC688130 ENSRNOG00000036830 ENSRNOT00000055274 3 1 1 91 7 145060815 145060833 CAATGCCTGTCATGTGGTC 59 145060590 145060763 GATTAAGTGGCTCATCATCGAC 59 NA Rattus norvegicus 81 Cpne4 ENSRNOG00000026577 ENSRNOT00000016749 3 1 1 80 8 113572158 113572176 CATCGCTCCCATCATTCAG 59 113572218 113577368 AGGATGAAATATTGCGAAGCC 59 NA Rattus norvegicus 81 Wdr19 ENSRNOG00000002932 ENSRNOT00000003991 1 1 1 80 14 44722059 44722077 GCTTCTACCTCATGTCTCC 57 44720889 44722015 GCTTCTTTGTACCTTCCGT 58 NA Rattus norvegicus 81 Ccdc142 ENSRNOG00000022326 ENSRNOT00000035329 3 1 1 86 4 113939984 113940004 AATGTCATAAGCAAGCCACAC 60 113940052 113940373 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Asb17 ENSRNOG00000048832 ENSRNOT00000073873 2 1 1 80 2 260040054 260047633 CACTCATATGGAGAACCTTCAC 59 260047672 260047692 TCTGAGCCACATAGAGTAGAG 58 NA Rattus norvegicus 81 Slc7a7 ENSRNOG00000010296 ENSRNOT00000014391 1 1 1 80 15 33014057 33014075 GCCTGCCCTTCTATTTCCT 60 33013794 33014013 TGGTAGACGCTACGATCCT 60 NA Rattus norvegicus 81 RGD1308601 ENSRNOG00000017215 ENSRNOT00000038767 3 1 1 80 18 74037510 74058703 CAGAGATACCAGATGGACCT 58 74037449 74037469 CCACATTTATCACTTCTGGGT 58 NA Rattus norvegicus 81 Ccdc102a ENSRNOG00000025843 ENSRNOT00000030229 1 1 1 80 19 10527406 10528729 GAGATGCTCAAGCAACTCAG 59 10528771 10528790 TTCATCTTCCAGGTCTTCCG 60 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000378 ENSRNOT00000049437 2 1 1 80 20 26589155 26589173 GATGGACATGCAGGATCTG 58 26564246 26589115 AGGGTAGTAACCTGGATTATCAG 59 NA Rattus norvegicus 81 Uba1 ENSRNOG00000019164 ENSRNOT00000031115 3 1 1 80 X 1724375 1724393 GGTTTCCTGAATTTGGCCC 59 1723949 1724336 CTCTTGATTATAGTACTGGTGACG 59 NA Rattus norvegicus 81 Klhl5 ENSRNOG00000008421 ENSRNOT00000004003 2 1 1 80 14 44844697 44844715 GCTGGATAGACCAGAAGTG 57 44834097 44844653 CTATTGGAAGTCCTGCTCG 58 NA Rattus norvegicus 81 Igfbp4 ENSRNOG00000010635 ENSRNOT00000014153 2 1 1 88 10 86951136 86957757 AGACCTCTGACAAGGATGAG 59 86957808 86957826 CATATGCTTCTGCAGGCAC 59 NA Rattus norvegicus 81 Keap1 ENSRNOG00000020878 ENSRNOT00000028360 1 1 1 81 8 22254274 22254292 TAGATGGCCACATCTACGC 59 22252726 22254231 TCTCGATCTGGCTCATATCTC 59 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 1 2 2 80 1 217030224 217032231 GTCAATGTCTTACAGGCCA 58 217032275 217032293 ATGGCAGATGTCAATGGTC 58 NA Rattus norvegicus 81 Olr1653 ENSRNOG00000018489 ENSRNOT00000024937 2 1 1 60 17 2690215 2690234 ACTGTAGACAAGCATCTCCA 59 2690254 2690275 CAATCAGGGACAAATTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ehhadh ENSRNOG00000001770 ENSRNOT00000002410 3 1 1 81 11 82955827 82955846 AGAAAGCTGGATCAGACCAC 60 82955890 82959742 TGGATATCAGCACCTGCAC 60 NA Rattus norvegicus 81 Dennd3 ENSRNOG00000010794 ENSRNOT00000014541 2 1 1 80 7 114804278 114804621 CTAAAGTGAACTGTATGGTGATGG 60 114804658 114804678 CGTTGATGATGTAGATGACGG 59 NA Rattus norvegicus 81 Kifc3 ENSRNOG00000014087 ENSRNOT00000066032 1 1 1 80 19 10329944 10329962 GGTGCTTAAGGAGATGGAG 57 10330005 10330435 TCATACATGGCAATCTGAGC 58 NA Rattus norvegicus 81 Ppp1r3g ENSRNOG00000016222 ENSRNOT00000021704 2 1 1 72 17 29567522 29567540 AAGGAGAGGATGCTGACAC 59 29567468 29567487 TATTCACCTTGTTCACAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311747 ENSRNOG00000011293 ENSRNOT00000015130 2 1 1 80 16 32535181 32535200 GATCCTCCTGAGTTCCAGAC 59 32534043 32535143 ATCAGGAGAATCTCTGAAATACCC 60 NA Rattus norvegicus 81 LOC100912380 ENSRNOG00000048194 ENSRNOT00000074211 2 1 1 80 1 88652727 88652747 GCTTTGATACTGACCGATCAG 59 88652550 88652685 GATTCAGGTGGAATCCTGC 58 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140,ENSRNOT00000018452,ENSRNOT00000018272 2 3 3 80 1 231457055 231458351 ATCACCAAAGAGACAGAGAC 57 231415725 231415743 TCCTGTGTTTCTCAGAACC 57 NA Rattus norvegicus 81 Ada ENSRNOG00000010265 ENSRNOT00000014151 3 1 1 80 3 160119593 160119611 AGTGAAGGATGGCATTCAC 58 160119451 160119549 AGTATGTCCACAGCCTCTC 59 NA Rattus norvegicus 81 Oxgr1 ENSRNOG00000037884 ENSRNOT00000057564 2 1 1 60 15 105402262 105402283 TTCTATTCAGAAGACTCGATGG 58 105402223 105402242 CAAAGAAATGACCCACACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 3 1 1 62 1 163797995 163805185 CTGGCATTGTCCAAGACTC 59 163805211 163805229 CAGCTGTTTACAGTGTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000088962 2 1 2 89 1 267495952 267495970 TGAAACCAAGTGCATGGGA 60 267496023 267507113 GTCCCACTCATAGGCTGTG 60 NA Rattus norvegicus 81 AABR07061068.1 ENSRNOG00000057187 ENSRNOT00000072325 1 1 1 60 4 103495997 103496015 TTGTGATGACTCAAGCTCC 58 103496039 103496057 GAGATGGAAGCTGACTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 2 1 1 149 15 104191361 104191384 ATACTTGACAAAGGAGGACCTG 60 104191233 104191251 GATGGAAAGCTCTGGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Hmgn5b ENSRNOG00000029078 ENSRNOT00000048744 3 1 1 93 1 124479697 124479965 ACTGTCTGCTATGCCTGTG 60 124482153 124482172 TTCTTCCACGACATTTGTGG 59 NA Rattus norvegicus 81 Tceanc2 ENSRNOG00000009398 ENSRNOT00000048784 1 1 1 80 5 126754876 126771153 CGACAAGGATAGGTCATGCT 60 126754815 126754835 TGTAAACTTCTTTGGCAAGGC 60 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 2 1 1 90 1 276012166 276012184 AAACAGCTCCTCCGATTCC 60 276011623 276011872 CGCTTCTTCCAAACTTTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 2 2 2 85 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939448 198942664 TGAATACATCCACCATGTTGG 58 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000018828 1 1 2 130 7 143960114 143966753 CTGCTTGAGGAAGAAGCTC 58 143960002 143960020 TATGGCTTCTTTGTGCCTC 58 NA Rattus norvegicus 81 Ccdc179 ENSRNOG00000049297 ENSRNOT00000074296 2 1 1 111 1 107383130 107384418 TACCAGGCAGTCTATGGAG 58 107383037 107383056 GATTCCTGGATCTGGAATCG 58 NA Rattus norvegicus 81 Kcna4 ENSRNOG00000004918 ENSRNOT00000006524 2 1 1 60 3 98298130 98298148 ACAGTTCAGTCCGCTACAG 60 98298167 98298190 CGTAGACCAGACACATTTATTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttl ENSRNOG00000018205 ENSRNOT00000024694 1 1 1 80 3 121618896 121618914 TTCATGGTGGATGAGGAGC 60 121618957 121623254 TTCTGCATAGAGCTTCTGGG 60 NA Rattus norvegicus 81 Ttl ENSRNOG00000018205 ENSRNOT00000024694 3 1 1 80 3 121613673 121613691 CAGTACCTAACAAGCGCTC 58 121613733 121618826 GAGGCAGCTCCTTATTATGTG 59 NA Rattus norvegicus 81 RGD1306091 ENSRNOG00000019931 ENSRNOT00000026986 3 1 1 80 19 58773879 58773897 TCCATGAAGTGTTTGCTGC 59 58773941 58773960 GGTGATCGTTGTACCACAG 58 NA Rattus norvegicus 81 Vom1r23 ENSRNOG00000047128 ENSRNOT00000059638 1 1 1 60 1 61686856 61686877 ATTTCTTTCTCCTCTACCACTG 58 61686817 61686836 ATAGACCTCAACCTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl17 ENSRNOG00000013875 ENSRNOT00000064431 2 1 1 80 9 110531957 110665249 CTGACTATGCACTGATAGCC 58 110531896 110531917 CTGTGATTTCTTTACACCATCC 58 NA Rattus norvegicus 81 AABR07045411.1 ENSRNOG00000049990 ENSRNOT00000071045 3 1 1 84 20 46715883 46716242 GACCACACCTCTGAGAACC 60 46716290 46716308 GCTGAGCCTCTTTCCTCTC 60 NA Rattus norvegicus 81 Pnmal1 ENSRNOG00000027944 ENSRNOT00000029825 3 1 1 85 1 78894958 78894976 CAACCTGATGATGCACTGG 59 78895022 78895567 TTCCTGAAATCTTTGGAGACAC 59 NA Rattus norvegicus 81 Spink8 ENSRNOG00000037199 ENSRNOT00000056180 1 1 1 80 8 117909002 117909020 AGGTGACCTTCTCTGTTGC 60 117909059 117911305 CCATAGGAAGGAAGAAATCAACTG 60 NA Rattus norvegicus 81 Sec61gl ENSRNOG00000049016 ENSRNOT00000073045 1 1 1 81 5 56753665 56753684 TGAAACTGATCCACATCCCT 59 56751835 56751853 ATCAGATCCGAGGGAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Fam159a ENSRNOG00000030641 ENSRNOT00000043054 3 1 1 84 5 127977556 127977575 TCTGCTACCTGTTCATCAGC 60 127968135 127977509 GACATCTCCTTGGAGCCTG 60 NA Rattus norvegicus 81 Hcrtr1 ENSRNOG00000013838 ENSRNOT00000018674 2 1 1 82 5 148349182 148349200 CTTCACCTTCTCCCACTGG 60 148346820 148349136 CCCGAAATTTGCCACTGAG 60 NA Rattus norvegicus 81 Grid2 ENSRNOG00000006174 ENSRNOT00000064696 1 1 1 80 4 94715628 94715646 AGACACTCTCAGAAGAGCC 58 94715689 94830785 AGATTAGTCTCCACCACCTC 58 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 2 2 2 119 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044061 51044079 CACACTCAGGTTGTTCCAG 58 NA Rattus norvegicus 81 Phlda2 ENSRNOG00000020614 ENSRNOT00000027972 2 1 1 167 1 216703152 216703170 GATCGACTACCAGAACCGT 59 216702705 216702723 ATCTTCGGTGAAGAACAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rragd ENSRNOG00000007331 ENSRNOT00000068028 1 1 1 80 5 48240183 48245241 TCATAGACTCCCAGGATGAC 58 48245284 48245302 CAGTGTTCACCTTGTAGGC 59 NA Rattus norvegicus 81 Hmgb2 ENSRNOG00000013167 ENSRNOT00000017635 1 1 1 80 16 36079017 36079383 GATGGAAGACCATGTCTGC 58 36078955 36078973 TCTCCCTGTCATAACGAGC 59 NA Rattus norvegicus 81 Gjb2 ENSRNOG00000008855 ENSRNOT00000011711 3 1 1 218 15 37383148 37383166 CTTCTGACCAACCCAGGAG 60 37379404 37379422 GTGGAGTGCTTGTTGACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Map3k12 ENSRNOG00000015134 ENSRNOT00000020437 3 1 1 80 7 144107171 144107278 GAAGGTTGACATCTGGTCC 58 144107109 144107130 GAGGAGTCTACATCTTTGTAGG 58 NA Rattus norvegicus 81 Klf13 ENSRNOG00000015822 ENSRNOT00000066380 1 1 1 95 1 124803196 124803214 CTCTGTCTCACTGTCGGTC 60 124772953 124772971 CTTCTTGTTGCACTCCTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC500475 ENSRNOG00000024506 ENSRNOT00000034978 2 1 1 80 5 78392003 78392024 CAAGCATCAGAATTTACCTTCC 58 78392064 78399332 CTTCCAAGACCTTCCATGAC 58 NA Rattus norvegicus 81 AABR07021022.1 ENSRNOG00000029425 ENSRNOT00000043688 1 1 1 80 13 53721473 53721491 TCAGAACAAGAGTCAGGGC 59 53720753 53721430 CCTGTCTACTCGGTAAAGGT 59 NA Rattus norvegicus 81 Tpgs2 ENSRNOG00000054118 ENSRNOT00000082963 2 1 1 80 18 17343786 17343806 TATTTGAGCTGGATTCATGCG 59 17342085 17343745 TGTCATGAGCTAATCCAGGT 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 1 1 3 110 2 261399453 261400613 TGGAAATGGAGGATCGACAC 60 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Per1 ENSRNOG00000007387 ENSRNOT00000057136 3 1 1 80 10 55689262 55689353 GGATGTAGATGAAAGGGCTG 58 55689393 55689414 TGTAGAAAGAGAAGTACCGGAG 59 NA Rattus norvegicus 81 Ly49i7 ENSRNOG00000048253 ENSRNOT00000073877 2 1 1 80 4 162721836 162721856 GCATGGATGTAAACGGATCTG 60 162718395 162721797 TGAAGGAACTTCCTTTCATCCT 60 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 2 2 2 178 7 12429862 12429881 TAAAGTCCACTGACGTTTCC 58 12428691 12429721 ATCAAAGAACACCTGCGTC 59 NA InUTR Rattus norvegicus 81 Trappc8 ENSRNOG00000022202 ENSRNOT00000021263 3 1 1 80 18 15325401 15327282 ACGAAGTCAAAGATGGCCT 59 15327325 15327344 TGTTATGAGGAGTGTCACCG 60 NA Rattus norvegicus 81 AABR07060118.1 ENSRNOG00000054042 ENSRNOT00000088439 2 1 1 80 4 57590307 57590326 CGAGGAGAGCATTAGATCCA 59 57590208 57590264 ATGGTTTGTGGCTAACAGC 59 NA Rattus norvegicus 81 Vdac1 ENSRNOG00000006375 ENSRNOT00000008477 1 1 1 80 10 37747317 37749156 TACTAATGTGAATGATGGGACG 58 37749197 37749215 AGATTGACAGCAGTCTCCA 58 NA Rattus norvegicus 81 Tubgcp6 ENSRNOG00000006028 ENSRNOT00000007954 1 1 1 80 7 130091131 130091152 ACTGCAGTAATGAACACTATCC 58 130090771 130091091 AATCATGGATGAACCGTGTG 59 NA Rattus norvegicus 81 LOC100364791 ENSRNOG00000005447 ENSRNOT00000007379 1 1 1 97 10 74277411 74277429 TTCAGGCATACCTACCCTC 58 74251117 74277352 CTGGAAGGACTTGGAAATGAG 59 NA Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598,ENSRNOT00000008359 2 2 2 80 6 33857626 33857647 AGGCTGCCTATCAATTAATGAC 59 33857685 33857850 TCTGATCCAAACTTCCAAACTC 59 NA Rattus norvegicus 81 RGD1359634 ENSRNOG00000011170 ENSRNOT00000014878 1 1 1 87 7 120373636 120373844 TTGACGAACTGGTGAAGGA 59 120373567 120373585 ATTCCTCGGTATTGCTTGC 58 NA Rattus norvegicus 81 Dmrtb1 ENSRNOG00000023213 ENSRNOT00000057341 2 1 1 89 5 127269919 127269937 ATTCATCCTCTGCTCTGGG 59 127268909 127269869 GTTCTGACACCAAGCTATTTCC 60 NA Rattus norvegicus 81 Sod3 ENSRNOG00000003869 ENSRNOT00000005155 2 1 1 92 14 60960193 60964216 CTTGTCAGGTGTGGAACCT 60 60960119 60960137 ATCTGACATGGTCCAGGTG 59 NA InUTR Rattus norvegicus 81 Tpbpa ENSRNOG00000039975 ENSRNOT00000061427 3 1 1 90 17 4166521 4166542 GACTGTCAAACTGTACAATAGC 58 4166592 4166709 ATCTTCATCAGTCAGCTCAC 57 NA Rattus norvegicus 81 Khnyn ENSRNOG00000020506 ENSRNOT00000027802 2 1 1 80 15 34554613 34554631 AGTCTGTTGTCCCTGACAC 59 34554675 34560674 CAGCTTCACCATGAACCTG 59 NA Rattus norvegicus 81 Meiob ENSRNOG00000014711 ENSRNOT00000060551 3 1 1 81 10 14199233 14201080 GAAATAGATGTTCCAGCTGTG 57 14201120 14201141 GATCTAGAAGAATCTTTGCTGC 57 NA Rattus norvegicus 81 B2m ENSRNOG00000017123 ENSRNOT00000023017 3 1 1 80 3 114090357 114090377 AGACCGATGTATATGCTTGCA 60 114090418 114090950 ATTACATGTCTCGGTCCCAG 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083,ENSRNOT00000082627 2 2 2 80 2 104783516 104783892 AATGCATGCTATCAATGGGA 58 104783935 104783953 ACATACCAGTTGACCTCGT 58 NA Rattus norvegicus 81 LOC100910068 ENSRNOG00000025725 ENSRNOT00000035678 2 1 1 80 7 116035454 116035473 ACCTTAACTGCTCGAATCCA 59 116034455 116035414 AACGTTCGAATATTCGTGTGAC 60 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 1 2 2 80 9 116079152 116079171 ATTCTTCAGAGAACTGCCCA 59 116076293 116079110 TCAGGTCCTCTTTCCATCAG 59 NA Rattus norvegicus 81 Cfap74 ENSRNOG00000023627 ENSRNOT00000068525 3 1 1 80 5 172853529 172853549 GCTCGAAGTCAATGAGTTCTC 59 172853591 172856396 GTAACCTCTGCGTCATCCA 60 NA Rattus norvegicus 81 Cd69 ENSRNOG00000056783 ENSRNOT00000091644 2 1 1 81 4 163043514 163043827 AAAGGACATGGCGTTTCTG 59 163043451 163043470 CCATGTCTGACTAGCTTCGT 60 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054,ENSRNOT00000030470 1 2 2 80 6 101795089 101795110 ACACTTCTAGCAACAATTCAGG 59 101795149 101831407 GAGTAAGTCATCTGGGTTGTC 58 NA Rattus norvegicus 81 Duox1 ENSRNOG00000033348 ENSRNOT00000046843 3 1 1 80 3 114283658 114283904 ATACCCAAAGCTGTACCTCG 60 114283946 114283965 CCCACTAGTACTGACACCTC 59 NA Rattus norvegicus 81 Rn60_11_0339.1 ENSRNOG00000056154 ENSRNOT00000088768 1 1 1 60 11 33830339 33830358 GGGCAGTTGATAGAGAAGAC 58 33830381 33830399 AGCCTTGGATCATACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem91 ENSRNOG00000021302 ENSRNOT00000038300 3 1 1 80 1 82467900 82467918 TCTTCTCCCACCTCTTCCT 59 82465279 82467857 TCACTGGATGATGTGTCCTC 59 NA Rattus norvegicus 81 Olr1376 ENSRNOG00000049640 ENSRNOT00000041353 3 1 1 60 10 12673645 12673667 CCATAAACTCTGTGTCTTGATGG 60 12673607 12673626 AAGGATATTGAGGTTGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phgdh ENSRNOG00000019328 ENSRNOT00000056173 2 1 1 80 2 200484485 200485217 CCACTATGATCGGCCTACTG 60 200484424 200484442 AAGTGTCTCCGTCAGACAC 59 NA Rattus norvegicus 81 Rn60_11_0375.7 ENSRNOG00000051348 ENSRNOT00000076161 2 1 1 60 11 33859046 33859066 CAAGGATTACACGGTTCAAGG 59 33859086 33859106 CCCATCTTCACAGAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cwh43 ENSRNOG00000002174 ENSRNOT00000002980 2 1 1 80 14 37334034 37334052 GCTACATCACTTCAGAGCC 58 37329982 37333993 CTGAGCTGTCAATATCCTTCAC 59 NA Rattus norvegicus 81 Mir345 ENSRNOG00000035618 ENSRNOT00000053741 2 1 1 62 6 132748992 132749010 CTAGTCCAGTGCTTGTGGT 59 132749036 132749054 ATCAAACCCAGGTCTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Skor2 ENSRNOG00000018006 ENSRNOT00000031993 3 1 1 108 18 73160535 73160553 CATCCATCACTGGAGGAGG 59 73161557 73162094 CCTTGTTCTTATCTGAGAAGTTGTC 60 NA Rattus norvegicus 81 Tsnax ENSRNOG00000049784 ENSRNOT00000071827 1 1 1 80 19 57771972 57771991 TTCCCACATAACCAAAGGAG 58 57772033 57772481 CTGCTGAAACGATTTGAAGG 58 NA Rattus norvegicus 81 LOC103692716 ENSRNOG00000059714 ENSRNOT00000086310 3 1 1 80 6 135110000 135110171 CGAGTATCTGAATTTCATCAGAGG 59 135109943 135109962 CTTTGTTGCAGCATTTCACG 59 NA Rattus norvegicus 81 Hnrnpul1 ENSRNOG00000020683 ENSRNOT00000028100 2 1 1 80 1 82534716 82534734 CATCTACAGAGCCTGACCC 59 82532333 82534672 AAGGCTCTTCACCTAGCTG 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 2 4 4 106 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831505 215831524 CACAGTATGTCTCCAGGAGG 59 NA Rattus norvegicus 81 Med18 ENSRNOG00000047303 ENSRNOT00000072028 3 1 1 93 5 150653139 150653158 AGTCACCATGATGCCAGTC 60 150650345 150650366 GATCAGACTTTCCAAACTGTGG 60 NA Rattus norvegicus 81 Kcnv2 ENSRNOG00000012566 ENSRNOT00000016757 2 1 1 127 1 245398389 245398408 ATGCTCTTCATCACTATGGG 57 245398498 245412858 GTAGAGATGCTTACCGCAG 58 NA Rattus norvegicus 81 AABR07034008.1 ENSRNOG00000001601 ENSRNOT00000002177 3 1 1 60 11 47793461 47793481 GGGCACTCAAAGAAATTTGGA 60 47793503 47793521 ATGTACACATCCGGAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4g2 ENSRNOG00000017158 ENSRNOT00000064535 2 1 1 80 1 175890378 175890396 AGGATTTGGAGTGCCTCTG 59 175890145 175890336 GATCCATTAAGGACTTGGCTC 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 2 2 2 84 5 165924829 165924847 TTCCTCTGTCTCCCTTCCA 60 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 3 2 2 80 10 49295570 49295890 CATGTTTCATCAGATGATGTGG 58 49295931 49295949 TGTTATAGGGACCTTCCCG 58 NA Rattus norvegicus 81 Wdr27 ENSRNOG00000015609 ENSRNOT00000021141 3 1 1 80 1 56932746 56934841 TCTATGATGGATGTGGAGAAGC 60 56932687 56932705 ACAGAACTCCACTGCTGTC 60 NA Rattus norvegicus 81 Apol2 ENSRNOG00000048970 ENSRNOT00000075248 2 1 1 84 7 118980475 118983539 TGAGTTGTCCAGAGCTGAC 59 118980409 118980428 CCTGTTCTGGTCTTCCTCAG 60 NA Rattus norvegicus 81 Zyg11a ENSRNOG00000010885 ENSRNOT00000014514 1 1 1 80 5 127811082 127811101 TGAAGGAAGCGCTCTATAGG 59 127805235 127811039 TAGCCACAAGCTTTAGCAC 58 NA Rattus norvegicus 81 Tubb1 ENSRNOG00000046151 ENSRNOT00000075148 1 1 1 88 3 172555901 172556597 AGCCTACGGTAAGAAGTACG 59 172556648 172556666 TTCCCAATCTGCTGGATCG 60 NA Rattus norvegicus 81 Ifitm7 ENSRNOG00000021674 ENSRNOT00000039434 3 1 1 60 11 34037294 34037314 TACGCTCTTCATGAACTTCTG 58 34037336 34037354 ACACTTCACAGAGTAGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkp1 ENSRNOG00000010076 ENSRNOT00000013531 1 1 1 80 13 52715582 52715601 TACTCTGGGCTCATTGACTC 59 52713929 52715539 CTCCACAGACTTGTCATCG 58 NA Rattus norvegicus 81 Glyr1 ENSRNOG00000003065 ENSRNOT00000004159 1 1 1 80 10 10744090 10744110 GCACTGTAAAGGGAATGATGG 59 10744152 10745510 CTGCATCTTTGACTGGCTC 59 NA Rattus norvegicus 81 LOC100910780 ENSRNOG00000047935 ENSRNOT00000073295 2 1 1 60 18 54207401 54207424 CACTATCTAGACAAGTATGAGTGG 58 54207441 54207461 CACCTTTGATGTAGACATCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000067251,ENSRNOT00000068116,ENSRNOT00000002636,ENSRNOT00000036179 3 5 5 80 11 78263088 78263108 GCCCAGTATGTAGAAGATCCT 59 78261701 78263047 GAATTCAGTGCCAACCTGTG 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769,ENSRNOT00000007087 2 2 2 80 10 55583123 55583142 TCCATCATGAGCACTCAGTC 60 55582947 55583080 CTTCCCTTGGATTGCACTG 59 NA Rattus norvegicus 81 Csrp1 ENSRNOG00000008937 ENSRNOT00000011991 3 1 1 80 13 52563746 52563764 GTCTACTTTGCTGAGGAGG 57 52563807 52568528 ATTCTTCTTGCAAACCATGC 58 NA Rattus norvegicus 81 Celf4 ENSRNOG00000014503 ENSRNOT00000061151 3 1 1 82 18 17702196 17702216 CTGTAACCTGCTCATCTACCA 59 17698990 17702152 CCACAAACTCGAAAGGGAG 59 NA Rattus norvegicus 81 Olr1204 ENSRNOG00000051111 ENSRNOT00000076868 3 1 1 60 8 40489159 40489178 CCTATGACAGATATGCTGCC 58 40489201 40489219 TGATGAGACATGGTGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mks1 ENSRNOG00000008635 ENSRNOT00000011500 2 1 1 80 10 75153585 75153603 AGCCATGCTATTAACACCC 58 75153645 75153879 TATCTTATAGCCAAGCTTCCC 57 NA Rattus norvegicus 81 Mks1 ENSRNOG00000008635 ENSRNOT00000011500 3 1 1 80 10 75153583 75153602 ACAGCCATGCTATTAACACC 58 75153644 75153877 TCTTATAGCCAAGCTTCCCA 59 NA Rattus norvegicus 81 Olr984 ENSRNOG00000049589 ENSRNOT00000047489 2 1 1 60 7 4292998 4293017 AACTGCCATGTCCTATGACC 60 4292957 4292976 GATGGTTGTGTAGTGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med25 ENSRNOG00000020363 ENSRNOT00000027675 3 1 1 80 1 100887279 100887299 GTCCTATGTACAATGCCATGC 60 100881596 100887237 CCACCCATGAACTTGATGC 59 NA Rattus norvegicus 81 Lzts3 ENSRNOG00000021231 ENSRNOT00000028835 1 1 1 82 3 123178162 123178504 CTAGACCAGTGCTCAGAGC 60 123178098 123178116 AGGTTCTGCATGGAATGGA 59 NA Rattus norvegicus 81 Riok2 ENSRNOG00000012692 ENSRNOT00000017165 1 1 1 80 1 59142951 59142973 CAGCATAGAACAAGAACCTTGAG 60 59143013 59146181 CTTCACCAGTTCTGGAGGG 60 NA Rattus norvegicus 81 Cdk5 ENSRNOG00000008017 ENSRNOT00000011052 3 1 1 80 4 7286954 7286973 GTACCCAGCTACAACATCCT 59 7287015 7287161 TTCAACAGGTTCTGCAACAG 59 NA Rattus norvegicus 81 Cad ENSRNOG00000026474 ENSRNOT00000039709 3 1 1 80 6 26659845 26659863 GTCACCTTTACTGCACTCC 58 26659693 26659804 AACAGATGAGACATCTGATCCT 59 NA Rattus norvegicus 81 Rrs1 ENSRNOG00000007240 ENSRNOT00000009482 2 1 1 60 5 9431361 9431379 GAGGGAAGAGGACCAAGAG 59 9431319 9431337 TTTCTTGCCTTTCTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 2 2 2 80 10 55434297 55434319 GGCTGAACAAAGAAATAGAGACC 60 55431654 55434260 TCTAGTTTCTCCTTTAACGCCT 59 NA Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 3 2 2 80 10 55431558 55431579 AGCAACTGCATAAGTATGTGAG 59 55430514 55431518 GTGAAACTATTGTTGCCCGT 59 NA Rattus norvegicus 81 Yipf2 ENSRNOG00000022043 ENSRNOT00000012138 2 1 1 80 8 22623495 22623513 GCAATCTCACTTTGGTGCT 59 22623355 22623453 CTGCTATAGTCACCTTGTGGA 59 NA Rattus norvegicus 81 Dusp1 ENSRNOG00000003977 ENSRNOT00000005383 1 1 1 90 10 16972036 16972054 TACAAGAGCATCCCTGTGG 59 16972102 16972386 CATCCTTGATGGAGTCTATAAAGTC 59 NA Rattus norvegicus 81 LOC100911256 ENSRNOG00000049104 ENSRNOT00000052408 3 1 1 80 6 91242401 91242419 CGCTAATGGCTTCTGAGGT 60 91242075 91242359 CTTCATCCAGTTTCCTGAGGT 60 NA Rattus norvegicus 81 Fam172a ENSRNOG00000013844 ENSRNOT00000041541 3 1 1 80 2 5335504 5411545 GTTGAACTGATGATCCAACGAG 60 5411583 5411604 CACATTGTGAACAGAGTCTGTC 60 NA Rattus norvegicus 81 Tceanc ENSRNOG00000004531 ENSRNOT00000005981 1 1 1 60 X 29504780 29504799 TGGGTCTGAAAGTAGTGCTG 60 29504820 29504840 AGAGTCATCCTCCAAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh9 ENSRNOG00000038068 ENSRNOT00000057924 3 1 1 60 15 77735170 77735190 ATTGTTTATCAGCTTGGACCC 59 77735130 77735149 GAACTCCTGTCTTTCTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3b ENSRNOG00000008001 ENSRNOT00000010645 1 1 1 82 5 128557931 128557955 GGGAATAAATGTGATATGGAAGAGG 60 128557994 128567619 AAGTCAAACCCAAGTTGCTC 59 NA Rattus norvegicus 81 Arrdc3 ENSRNOG00000045649 ENSRNOT00000072849 2 1 1 80 2 8740218 8740562 ATTCGCTAATGGTATACGTGGA 60 8740603 8740621 GAGGGATGGTCCCAATGAC 60 NA Rattus norvegicus 81 Hbz ENSRNOG00000020536 ENSRNOT00000027851 3 1 1 93 10 15609575 15609699 ACTTCAAGCTCCTGTCTCAC 60 15609501 15609519 AACTTGTCCCAAGCTTCGT 60 NA Rattus norvegicus 81 AABR07065804.1 ENSRNOG00000049252 ENSRNOT00000068561 2 1 1 91 6 141866507 141866526 ACAAAGCATGGTTTACTTGC 58 141866414 141866456 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Fndc3b ENSRNOG00000024089 ENSRNOT00000034096 2 1 1 80 2 113229616 113229635 GGACCTGGGATCAAGAAGAC 60 113198003 113229577 CAACTCATACTCTTGCAAGTCAG 60 NA Rattus norvegicus 81 Prr32 ENSRNOG00000049388 ENSRNOT00000074384 2 1 1 65 X 131617892 131617913 CTTGATCGTATTTCTACATGGC 57 131618768 131618787 TTATGGATGAACGGCTATGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563956 ENSRNOG00000025014 ENSRNOT00000030686 2 1 1 60 11 83855958 83855976 GTGATGACATCGCCAAGAC 59 83855996 83856018 GTCAGTTTCACTGTAATCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477,ENSRNOT00000081601 1 2 2 80 14 66935508 66935528 GAACAGAACTCCATAAGGGTC 58 66934995 66935470 GTTATTACTCAGGTCTAGTCGTC 58 NA Rattus norvegicus 81 LOC102555727 ENSRNOG00000029686 ENSRNOT00000052316 2 1 1 83 4 9810501 9810523 ATCTTTGCATCAAAGACGTG 57 9810569 9810587 CCTCATACAGTGGAATGGG 57 NA Rattus norvegicus 81 Bbs2 ENSRNOG00000019020 ENSRNOT00000026076 3 1 1 80 19 11411528 11411547 TTTCACGTCTGTTTCACGTC 59 11411590 11413140 ATTCACCGTGATCTCACCA 59 NA Rattus norvegicus 81 RGD1561795 ENSRNOG00000009203 ENSRNOT00000012217 1 1 1 100 8 13285940 13290568 CTCGCCAACAATGGAAGAC 59 13285858 13285876 CACGTGACATTCATCCCTC 58 NA Rattus norvegicus 81 Zfp560 ENSRNOG00000048394 ENSRNOT00000071010 1 1 1 80 8 21384095 21384114 CCAGAGGGACAATGTTTCAG 59 21383615 21384055 TTCCATTGTGGCTATTTGACAG 59 NA Rattus norvegicus 81 Fam150b ENSRNOG00000005154 ENSRNOT00000006921 3 1 1 84 6 49826197 49828212 GAGAGTGGAGATTGTTCCTC 57 49828336 49828357 CTTCGGACTGAAATAAAGAGGA 58 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653,ENSRNOT00000077386 2 2 2 109 10 16774604 16774622 TCCTCTGTTTGGACCACAG 59 16770300 16774531 TCTAGCTGTGACCTCAGTG 59 NA InUTR Rattus norvegicus 81 Mief1 ENSRNOG00000017553 ENSRNOT00000023843 1 1 1 80 7 121473121 121473139 ACAGGGACATGAAGACAGG 59 121473180 121473388 AGAATGTATCTGTGTCAAAGGC 59 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337,ENSRNOT00000087621 1 2 2 80 X 29468242 29468260 CCCAAGGATCCTTCAAGTG 58 29468302 29473180 CAGAATGTTCAGGAATCACAG 57 NA Rattus norvegicus 81 Ccnd3 ENSRNOG00000050258 ENSRNOT00000074217 3 1 1 104 9 15406465 15406918 TGTGCCACAGATTACACCT 59 15406379 15406398 ATCTGCAGACATAGAGCAGG 59 NA Rattus norvegicus 81 Zfp654 ENSRNOG00000029956 ENSRNOT00000050533 1 1 1 60 11 1835931 1835949 GCCCAGCATTACTTAAGCA 58 1835889 1835907 TAGGAACCACTTCACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174,ENSRNOT00000083194 2 2 2 81 8 22300235 22300254 TTTCTGCTCTACCTGGATCC 59 22300298 22300394 AGTGAAAGGACTCCAGTGG 59 NA Rattus norvegicus 81 AABR07065693.1 ENSRNOG00000045786 ENSRNOT00000070810 3 1 1 119 6 139412500 139412518 AATCCCGACTGAGCATCAG 60 139412597 139412713 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 Secisbp2 ENSRNOG00000013773 ENSRNOT00000041371 3 1 1 80 17 13557099 13557117 GGCGGAGTCTGAATAAAGC 59 13556682 13557055 TCTTGTGGAACTGGTCCTG 59 NA Rattus norvegicus 81 Avp ENSRNOG00000021229 ENSRNOT00000028833 3 1 1 134 3 123118136 123119323 ATGGAGCTGAGACAGTGTC 59 123118020 123118038 GTAGTTCTCCTCCTGGCAG 59 NA Rattus norvegicus 81 Olr803 ENSRNOG00000054505 ENSRNOT00000077710 1 1 1 60 4 71892589 71892607 CACAAAGCCTTTGAGACCT 58 71892547 71892566 CCATCCCATAAGACATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 2 2 2 80 20 25473760 25565638 CTGTATCTGAAAGCCACATCC 59 25473700 25473721 GGTCTAAATTGTCAGCATCCTG 60 NA Rattus norvegicus 81 Mir18a ENSRNOG00000035645 ENSRNOT00000053768 1 1 1 60 15 100180041 100180063 CTAGTGCAGATAGTGAAGTAGAC 58 100180082 100180101 TCTTATGCCAGAAGGAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911248 ENSRNOG00000001868 ENSRNOT00000002552 1 1 1 90 11 87790983 87791001 GAATGGACCTGTCTTTGCA 58 87782095 87790929 CACAATGTCACCAACCTCC 59 NA Rattus norvegicus 81 Abl1 ENSRNOG00000047356 ENSRNOT00000042495 1 1 1 81 3 10054831 10060413 GAAGACCCTGAAGGAGGAC 59 10054768 10054787 GTTAGGGTGCTTGATCTCCT 59 NA Rattus norvegicus 81 Eef1d ENSRNOG00000021638 ENSRNOT00000029456 3 1 1 80 7 116928695 116929255 TCTTGGATGTTAAACCTTGGGA 60 116928636 116928654 GTCCGTCCAATTGGATGGA 60 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000078822 1 1 2 148 18 25962966 25963096 TCCCTGAGGTCAAGAAACTC 59 25963204 25963225 CCTAGCATTGAATTCTTGAAGC 58 NA InUTR Rattus norvegicus 81 Spata5l1 ENSRNOG00000000169 ENSRNOT00000043414 1 1 1 80 3 114758234 114758252 AGACGATGCCTTGTTACGA 59 114758296 114759270 ATAGAAAGCCTGCCCTCTC 59 NA Rattus norvegicus 81 Spata5l1 ENSRNOG00000000169 ENSRNOT00000043414 3 1 1 80 3 114759311 114759331 GTTTCTCTAGAGAACCTGGCA 60 114759373 114760054 CAGAGCAGCTTCTTTGCAG 60 NA Rattus norvegicus 81 Tmem225 ENSRNOG00000054439 ENSRNOT00000084164 1 1 1 81 8 44002317 44002605 GTTTCTTCACAGGTTGCCT 58 44002648 44002668 ACGAAGTACACATACTGACCT 59 NA Rattus norvegicus 81 Tmem225 ENSRNOG00000054439 ENSRNOT00000084164 3 1 1 82 8 44002317 44002605 GTTTCTTCACAGGTTGCCT 58 44002649 44002669 AACGAAGTACACATACTGACC 58 NA Rattus norvegicus 81 Ampd3 ENSRNOG00000018262 ENSRNOT00000024933 2 1 1 80 1 175627868 175627887 AAGTTGAGTACGTGTGACCT 59 175627929 175628808 CTTCTGCTTCTCCTGATGTG 58 NA Rattus norvegicus 81 Mir20a ENSRNOG00000035605 ENSRNOT00000053728 3 1 1 60 15 100180345 100180365 GCACTAAAGTGCTTATAGTGC 58 100180386 100180405 TGTAAGTGCTCGTAATGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564102 ENSRNOG00000047758 ENSRNOT00000042604 3 1 1 101 14 525009 525755 GAGTCAAGTCCTAGGGTGC 60 525819 525838 CTCTTACAGCAGGAGAAGGA 59 NA Rattus norvegicus 81 Mir29b1 ENSRNOG00000035463 ENSRNOT00000053586 3 1 1 61 4 58344364 58344383 AAGCTGGTTTCATATGGTGG 58 58344322 58344343 CTGATTTCAAATGGTGCTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828,ENSRNOT00000064743 1 2 2 80 2 3809371 3821224 ATACAAGAGCAAGATTATGCCC 59 3821262 3821283 CCTCTTTCCTCATAGAGATGGA 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828,ENSRNOT00000064743 2 2 2 95 2 3775787 3780523 GAGTTAAACAGGCCCACAG 59 3780582 3780600 CGTAAGGATGACTGACAGC 58 NA Rattus norvegicus 81 Cdhr2 ENSRNOG00000017917 ENSRNOT00000024151 1 1 1 80 17 10438331 10438351 CATGCCAACTACTTCTCTGTC 59 10438143 10438291 GGAAGGAAGTGTCTCAAAGTC 59 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 3 2 2 81 5 131847921 131847940 CCCTGTTTGCCATAGATGTG 59 131846074 131847877 ACAAACAACCTGCCTACCA 60 NA Rattus norvegicus 81 Lmf2 ENSRNOG00000030633 ENSRNOT00000049538 3 1 1 81 7 130322916 130322937 GGAATTCTTCCCATCTGTATCC 58 130322762 130322877 TGGACTCTTATCCTTTAGTCCA 58 NA Rattus norvegicus 81 Bcl9 ENSRNOG00000017516 ENSRNOT00000023548 1 1 1 80 2 199338383 199339518 AGTGTAGAATCAGGTGGTCC 59 199338322 199338340 GCTAGAGGGAAGACTTCCG 59 NA Rattus norvegicus 81 Olr1461 ENSRNOG00000047410 ENSRNOT00000040081 2 1 1 60 10 45160049 45160068 TTCTACTTGCTCCTCTCACC 59 45160091 45160109 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man1a2 ENSRNOG00000015226 ENSRNOT00000067000 1 1 1 80 2 202905534 202905555 AACCTATTGGTATCTATGGCGA 59 202902943 202905493 TTCTCAATAGCCAATGCGG 58 NA Rattus norvegicus 81 Lamp3 ENSRNOG00000022792 ENSRNOT00000034498 1 1 1 80 11 84993651 84996785 GACCATCTCAAATACAGAGAAGAC 59 84996821 84996842 TTGAAAGAATGCCCAACTACTG 59 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822,ENSRNOT00000091488 3 2 2 80 6 55659768 55659786 ATGGAGCTGATGTCAACTG 58 55659827 55665603 TGTCTTTATTACCAGACAGTGC 59 NA Rattus norvegicus 81 LOC500077 ENSRNOG00000026958 ENSRNOT00000029818 1 1 1 126 4 62394796 62395736 CTGAACAGGCATTCAAGATCG 60 62394690 62394709 AGGGTTTCCATTGCTATGGT 59 NA InUTR Rattus norvegicus 81 LOC689574 ENSRNOG00000046109 ENSRNOT00000073846 1 1 1 104 4 62789160 62789834 CCAGAACTACGACATAAACGA 58 62789900 62789918 TTCTTCTTGGCTTCCAGGT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940,ENSRNOT00000079571,ENSRNOT00000067954 2 3 3 93 4 27524804 27524823 GTCTGGAGTCTCAGATGGTG 60 27524879 27537811 CCTTCATATGGCTCTCGCT 59 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 1 2 2 80 5 146661880 146661902 GATACCATCGTGTATTTCCACAG 59 146661942 146667897 TTGGAGTTCGTAGGCTTGG 60 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000061506 ENSRNOT00000084195 3 1 1 60 10 60997567 60997585 TTCATTCTGCTGGGATTGG 58 60997606 60997627 GGAAGAGTATGAAGACAACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rprd1a ENSRNOG00000016036 ENSRNOT00000021624 1 1 1 80 18 16474112 16474133 TGAGCAAATAAAGGTGGATGAG 59 16473276 16474071 ACAAGGTCGAGAGTCTGTG 59 NA Rattus norvegicus 81 Gas8 ENSRNOG00000026964 ENSRNOT00000029999 1 1 1 80 19 56323098 56323927 GTGGAGATCAAGGTTTACAAGC 60 56323968 56323986 CTCAGTCTTCACCTCTGCC 60 NA Rattus norvegicus 81 Pdzk1ip1 ENSRNOG00000008161 ENSRNOT00000011434 3 1 1 192 5 133896293 133897980 TCAACAAGGTCTAGGGAACC 59 133899772 133899791 AGAGTATCTGCCATCCATGC 60 NA Rattus norvegicus 81 Olr810 ENSRNOG00000005398 ENSRNOT00000007150 1 1 1 60 4 72404300 72404318 CCACATTCTGCCTCATCTG 58 72404340 72404360 CCACAACAGCATAGAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faah ENSRNOG00000011019 ENSRNOT00000015961 3 1 1 81 5 134334209 134334229 CCTTTCTCAACAGTATGCGTC 59 134333017 134333475 ACAGACTGGCGATACATCTC 59 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911 1 1 3 82 X 71166674 71166692 CTGTGCTTATCCCTGTTGG 58 71166420 71166628 AATTCGAGGCATTCGTTCC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304,ENSRNOT00000081291 3 3 3 80 1 198312152 198312171 ACATGAATGCAATGAGTGCC 60 198311994 198312110 AGTACTCAGACCAGTGTCCT 60 NA Rattus norvegicus 81 Tubg1 ENSRNOG00000020213 ENSRNOT00000027370 1 1 1 80 10 89031017 89031337 GGCAATCAGATTGGGTTCG 59 89031381 89031399 GAACTCCTCTACGATGCCC 60 NA Rattus norvegicus 81 AC091336.1 ENSRNOG00000011234 ENSRNOT00000014930 3 1 1 60 1 60106512 60106531 ACAACAAGTATGTGGTCCGT 60 60106554 60106572 TGGAGGTAGCGGATAAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rap1b ENSRNOG00000007048 ENSRNOT00000009511 1 1 1 80 7 60855127 60856955 TAAAGACACTGACGATGTCCC 60 60855067 60855085 TGTTCCTTCCCGACAACTC 60 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083,ENSRNOT00000080303 3 2 2 80 5 90953998 90957140 GACTAAGAACAATCAGTGGGC 59 90957180 90957200 GTCCTTTCTGGGACATTAGTG 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 2 1 3 82 12 21749679 21756469 TGATGACGACAGTGGTTCC 60 21745537 21745557 CTAGGTGTTTCCAGAACAGGA 60 NA Rattus norvegicus 81 AABR07034729.1 ENSRNOG00000042193 ENSRNOT00000046465 1 1 1 80 11 85263564 85430542 TAATTTGTGCTACAGCAGGG 58 85430584 85430603 CTGTTCCACCAGGTAATGTG 59 NA Rattus norvegicus 81 Il31 ENSRNOG00000026192 ENSRNOT00000030573 1 1 1 60 12 38535141 38535161 TCGAAGGCTCTTTATGAAGAC 58 38536837 38536855 ACTCATCTGGCGATATCCC 59 NA DesignNoJunction Rattus norvegicus 81 Tvp23b ENSRNOG00000050649 ENSRNOT00000074853 3 1 1 80 10 49301388 49302503 AATCCAGAATCAGACACCCG 60 49302546 49302564 CGCAGAGGAGATAGACCAC 59 NA Rattus norvegicus 81 LOC100362798 ENSRNOG00000026875 ENSRNOT00000034088 1 1 1 60 7 62317520 62317538 ATCCTGTGGGATTGGTGTG 60 62317478 62317498 ATATAAGACACCCAGTCCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc17a5 ENSRNOG00000009330 ENSRNOT00000012474 1 1 1 80 8 85908199 85908219 AAACTCACAAGACAATCTCCC 58 85906931 85908160 CTACCTTCTGTGAAGAAAGCTG 59 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118,ENSRNOT00000090751 2 2 2 80 4 27218566 27222494 AAGAATACAAGAGCAGGGCA 60 27218505 27218524 TCAGTCAGTAAGCTCCTCCT 60 NA Rattus norvegicus 81 Scrn1 ENSRNOG00000009636 ENSRNOT00000013088 2 1 1 80 4 84706750 84706768 AATGAAGCCATCAATGCCA 58 84698497 84706706 TTCTAAACCAAGCCTGACC 57 NA Rattus norvegicus 81 Lysmd3 ENSRNOG00000016298 ENSRNOT00000021818 3 1 1 97 2 9529917 9529936 GACAGACTTGATGACATCGT 58 9529994 9531651 ATATCTGCTACCGTACAACAG 57 NA Rattus norvegicus 81 Pwp2 ENSRNOG00000001210 ENSRNOT00000001605 2 1 1 80 20 11228958 11229798 ATTCGCTTATCGGTTCTCCA 59 11229839 11229859 ACAGAATTTCCATCACGTGAG 59 NA Rattus norvegicus 81 Ccdc94 ENSRNOG00000029606 ENSRNOT00000050775 1 1 1 165 16 22852229 22852247 CAAAGAAGGCAAAGACGGA 58 22851469 22852100 GACCTGTCACTGTCCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 2 1 1 64 18 27658069 27658087 GCGCTTTCAATCCTCAAGG 60 27658115 27658805 AAAGGACTCTGTGGTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mirlet7b ENSRNOG00000035636 ENSRNOT00000053759 1 1 1 65 7 126590630 126590649 GGGTGAGGTAGTAGGTTGTG 60 126590673 126590695 GTTGTATAGTTATCTTCGGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr1a ENSRNOG00000009545 ENSRNOT00000013587 1 1 1 80 4 99875508 99875526 ACCAAGAAAGCACTGAGGA 59 99875569 99875997 AACTTTCTGCAATACCTCCC 58 NA Rattus norvegicus 81 Krtap11-1 ENSRNOG00000027478 ENSRNOT00000029345 2 1 1 60 11 29710372 29710390 GTGGGAGGCATTTCTACTG 58 29710330 29710349 ATTGCTGGTATGTCCTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk6 ENSRNOG00000009258 ENSRNOT00000012597 1 1 1 80 4 27786302 27787617 AGACCTCCTTCTGAAATGCT 59 27786241 27786260 TGGAAGTACGGGTGATTCAG 60 NA Rattus norvegicus 81 Mrpl2 ENSRNOG00000018057 ENSRNOT00000024380 2 1 1 97 9 16645051 16645162 GATCCTTGTAGGTCTGCAG 57 16644972 16644990 AGGATTGTATCTCCTGCCT 57 NA Rattus norvegicus 81 Proca1 ENSRNOG00000023381 ENSRNOT00000037048 2 1 1 80 10 65454813 65454836 CAGTAACGATTAGAAGATGGAGTG 59 65454871 65465809 GCAACCTGGTTATATCAGTTCTC 59 NA Rattus norvegicus 81 RGD1311447 ENSRNOG00000016606 ENSRNOT00000022308 3 1 1 98 9 94567579 94567597 AGAATTTGCAGTCTCTGGC 58 94567659 94567802 CCAAGTGATCCTCCATCCT 59 NA Rattus norvegicus 81 Mertk ENSRNOG00000017319 ENSRNOT00000023419 2 1 1 80 3 121333840 121333862 GAACCATGAGATGTACGATTACC 59 121333899 121340427 ATTTCATACAGATCATCCAGGC 58 NA Rattus norvegicus 81 Col6a6 ENSRNOG00000023007 ENSRNOT00000056414 1 1 1 80 8 114419945 114419963 AGAGCAAGGTACAAAGGGA 58 114417299 114419804 CCAACTTCACCCTCTTCTC 58 NA Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 1 2 2 80 2 115774712 115774733 TCTATCTCATGCTAAAGCTCTC 57 115774771 115788188 CAAAGTAAATGAGCATACCCAC 58 NA Rattus norvegicus 81 Ifitm6 ENSRNOG00000036645 ENSRNOT00000054875 2 1 1 80 1 213817435 213818077 TCTACTCTGTGAAGTCCAGG 58 213817374 213817392 GTTTCTTGGCAGTTGAAGC 58 NA Rattus norvegicus 81 Fam217a ENSRNOG00000016672 ENSRNOT00000022369 1 1 1 80 17 30671164 30671926 CTAACAAGAACCATCTGGAAAGTC 60 30671964 30671983 GTGATCTACTGTGAGCATGC 59 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 1 2 2 80 5 134726697 134726715 CTTTGTAGGTCACTGTGGG 58 134726758 134727342 CTTTCGAACAGCTTGTTCTG 58 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525,ENSRNOT00000066934 1 2 2 80 9 93183047 93183065 CTTCCCTTCTATGCCCTCC 59 93183107 93188810 AGTCCAAGAATCCTGGAAGAG 59 NA Rattus norvegicus 81 Cd79al ENSRNOG00000049925 ENSRNOT00000071609 3 1 1 89 9 16795858 16795876 TCTAGGAGTCCTCCGAACC 60 16794199 16794218 CTTTCTAACATCAGGGCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Gemin7 ENSRNOG00000049772 ENSRNOT00000074418 3 1 1 144 1 80481898 80483368 CTACTCTCGGAGCTTTCCAG 60 80481773 80481793 GGAATGCATCTGAAGCTAGAC 59 NA InUTR Rattus norvegicus 81 Gfra1 ENSRNOG00000017438 ENSRNOT00000023667 3 1 1 80 1 279248429 279276954 AATTACATCTGCAGATCTCGC 59 279248369 279248390 CTTAAGACAGTTGCTGACAGAC 59 NA Rattus norvegicus 81 Ccdc151 ENSRNOG00000013263 ENSRNOT00000017820 3 1 1 80 8 23001487 23001506 TAGAAGGAAAGCTGCCTCTG 60 23001274 23001447 CCTCTTCGTCAAAGAACTTGTC 60 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 1 2 2 80 4 57943729 57943748 CACAGCTACTCTCAGATGGT 59 57943788 57944097 AAGCTCGAACAGTTCTTTATGG 59 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 2 2 2 80 4 57940576 57940594 CAAGTCAATTCAACCCGGC 60 57940638 57943610 GAACCATTTCCTCCGAAGC 59 NA Rattus norvegicus 81 Olr1346 ENSRNOG00000046219 ENSRNOT00000047487 1 1 1 60 9 99720911 99720929 TCGTTCTGGTAGGGTTTGG 59 99720953 99720971 AGGAACACAGCAAAGAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294,ENSRNOT00000078846 3 2 2 81 7 117150461 117150547 GCCCATGAGGAGAAGATCC 60 117150398 117150417 AATACTTGTGCAGCTTGACG 59 NA Rattus norvegicus 81 Mir148a ENSRNOG00000046475 ENSRNOT00000073699 3 1 1 60 4 81013319 81013338 TCTGAGACACTCTGACTCTG 58 81013278 81013300 CTAGAGACAAAGTTCTGTAGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898,ENSRNOT00000017573 3 3 3 80 18 25206409 25207999 GATGAGTAAGCTCAATCAGAACC 59 25208039 25208057 TTGACTGTGAAGGTGTTGC 59 NA Rattus norvegicus 81 Mapk1 ENSRNOG00000001849 ENSRNOT00000002533 2 1 1 80 11 88231791 88236621 GATCTCAAGATCTGTGACTTTGG 59 88231733 88231754 TACATACTCTGTCAAGAACCCT 58 NA Rattus norvegicus 81 Erp44 ENSRNOG00000005841 ENSRNOT00000007711 3 1 1 84 5 63970523 63970542 CAGACTACATCAGGCAACAG 58 63969311 63970479 CTCTTACTGCGATCAAGATTGG 59 NA Rattus norvegicus 81 AABR07042866.1 ENSRNOG00000013826 ENSRNOT00000018484 1 1 1 80 19 12971553 12971574 AATGAAAGACAAGGCTCTTCC 59 12971493 12971511 CCTATTGCCATCCAGAAGG 58 NA Rattus norvegicus 81 Cbx2 ENSRNOG00000049215 ENSRNOT00000072534 2 1 1 80 10 108136072 108137530 CTCCAAGCTCAAGGAACCA 60 108137572 108137592 GAAGAGGAGGAAGATGTGGAG 60 NA Rattus norvegicus 81 LOC100911398 ENSRNOG00000047820 ENSRNOT00000071262 1 1 1 60 10 44861495 44861513 TTGTGCTGATACCCTTCCT 58 44861535 44861555 TATACAACAACCAACACCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem216 ENSRNOG00000020692 ENSRNOT00000028079 2 1 1 80 1 226605248 226605666 GTACAAAGGTCTCCTGCTG 58 226605186 226605206 TCAATGCCAAGATAAAGGAGC 59 NA Rattus norvegicus 81 RGD1561777 ENSRNOG00000050425 ENSRNOT00000072256 3 1 1 80 20 45043474 45043492 TGAACCGATCTTCCAAAGC 58 45043411 45043430 GGAAGACAGAAACCCACAG 58 NA Rattus norvegicus 81 Tmem138 ENSRNOG00000020693 ENSRNOT00000028092 2 1 1 80 1 226628531 226628549 TGACCTGTTCGTCAATTCC 58 226628238 226628489 ATATCCTGGATGATGAACAGC 58 NA Rattus norvegicus 81 Dusp14 ENSRNOG00000030091 ENSRNOT00000083300 3 1 1 171 10 71364961 71383524 GAGTACGTCCAGGAAGGAG 59 71364808 71364826 CTCGGAAATCATCCGAGGA 59 NA InUTR Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000087528,ENSRNOT00000026716 1 2 2 69 9 17689237 17689255 CTATGTCAGAGGAGCCGTC 59 17688193 17688211 CATCTTCTGGATTGCGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 2 2 2 80 7 77159285 77159305 AGTGTCTGATACCTCAGAGGA 60 77159132 77159244 GGAGTCAAACAGAATGCTGG 59 NA Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 1 2 2 80 18 38329672 38329690 TGTCTCAGTTCTTCGCCTG 60 38321401 38329629 TCATTTGGGTTGTCATCTGC 59 NA Rattus norvegicus 81 LOC100363136 ENSRNOG00000001570 ENSRNOT00000002137 3 1 1 60 11 28672599 28672618 AAGGAGCTTCTACACTTCAG 57 28672558 28672577 GACTCCATAACTCACAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1372 ENSRNOG00000047727 ENSRNOT00000041612 1 1 1 60 10 12643728 12643746 CTGCTCCTGAAACTTTCCT 57 12643686 12643707 CCTCTGTAAGAATCATCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491,ENSRNOT00000078392 3 2 2 81 X 15043048 15043165 TATGTGGAACATGTCCTCAG 57 15043209 15043227 AACAGTCTGGAAGACAACG 58 NA Rattus norvegicus 81 Slc25a47 ENSRNOG00000003020 ENSRNOT00000004070 1 1 1 80 6 132766672 132766691 CCTTTGCCACCTACTTTCTC 59 132766733 132767089 CTAGGACATCTGGCTGACTC 59 NA Rattus norvegicus 81 LOC100910224 ENSRNOG00000050309 ENSRNOT00000075691 1 1 1 60 2 115239241 115239262 ATCTATGTGTTGACAGTAGTGG 58 115239202 115239220 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 3 3 3 80 1 233135106 233138180 ACGTTTCCAAGTTTGGTGTG 60 233135045 233135063 CACGGACAATCACTACCGT 60 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 2 2 2 80 18 28654625 28654643 GACTGGCCATCAGATTTGC 59 28654687 28655896 AGCATCACCTTCTCCAGAG 59 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808 3 1 2 60 6 142418776 142418794 GAGCTTGTTGAGTCTGCTG 59 142418734 142418753 CACACGAGAGTTTCAATGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem208 ENSRNOG00000015974 ENSRNOT00000021723 3 1 1 82 19 37284014 37284032 CATCCTTCTCTGAGGACGG 59 37284078 37284258 ATCCTTAAGGTGCTCTGCC 60 NA Rattus norvegicus 81 Chmp2a ENSRNOG00000043328 ENSRNOT00000030931 3 1 1 80 1 65543070 65543166 TGAACAGACAGCTGAAATTACC 59 65543205 65543225 CCTTCATGTCCATGATCTCTG 58 NA Rattus norvegicus 81 Taz ENSRNOG00000053023 ENSRNOT00000089778 1 1 1 80 X 156423114 156427333 ATGTCGAGGAGATGGTGTC 59 156423052 156423070 AAGATGTGTACCCAGTCCC 59 NA Rattus norvegicus 81 LOC100912418 ENSRNOG00000048642 ENSRNOT00000074198 2 1 1 60 4 170117282 170117300 AAGGTCTGGGTAAAGGTGG 59 170117240 170117258 CCCTGGATGTTATCTCGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc17 ENSRNOG00000003803 ENSRNOT00000005078 3 1 1 80 7 53655280 53655301 ATGAAAGAATGAATGCCAGGAG 59 53654253 53655240 CACATCCATGGTTGAATGGG 59 NA Rattus norvegicus 81 Neurl4 ENSRNOG00000016109 ENSRNOT00000021883 1 1 1 80 10 56521834 56521853 TTTAAAGAGCTGCGAGTACC 58 56521893 56522014 GGAGGCATGAAATAATCTTCAG 57 NA Rattus norvegicus 81 Nr2c2ap ENSRNOG00000022247 ENSRNOT00000060012 3 1 1 161 16 21038775 21038794 TTGTCACATAGAGGTGACCG 60 21038236 21038652 TAAGCACAGAACTGACCCTG 60 NA InUTR Rattus norvegicus 81 Selo ENSRNOG00000060120 ENSRNOT00000078620 3 1 1 80 7 130077729 130078366 GCTTCCTGGATAGGTATGACC 60 130078407 130078426 GTGGCTGCTTACTGTATGTG 59 NA Rattus norvegicus 81 AABR07057196.1 ENSRNOG00000005546 ENSRNOT00000007332 2 1 1 128 7 60070383 60070401 CAACATGCAGGTTGAAGGG 59 60070493 60070513 ACATTGCCAATCTGCATGG 59 NA Rattus norvegicus 81 AABR07046713.1 ENSRNOG00000058962 ENSRNOT00000088143 2 1 1 81 5 2605402 2605509 GAAGGATGCTCTTCATGAATGTC 60 2605550 2605568 ATGAAGGCCATCCTCACTG 60 NA DesignRelaxed Rattus norvegicus 81 Mgat4c ENSRNOG00000004149 ENSRNOT00000005523 1 1 1 80 7 44022592 44022793 GGAACATACTGGCACATGG 59 44022834 44022855 CTCCTCTTCAAAGTCATCATCC 59 NA Rattus norvegicus 81 Nkx2-5 ENSRNOG00000020747 ENSRNOT00000028155 3 1 1 138 10 16636403 16637854 GATAAGAAAGAGCTGTGCGC 60 16637955 16637973 GCTCCAGCTCATAGACCTG 60 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 1 2 2 80 2 250733891 250736669 AGCCAAATCCAAATGCCAG 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Lpcat2b ENSRNOG00000055849 ENSRNOT00000080875 2 1 1 93 14 3357518 3357536 AACCCAACGCAGAGATACC 60 3357440 3357466 CGGCGGATATAAAGACTTATTCAC 60 NA Rattus norvegicus 81 Sebox ENSRNOG00000009979 ENSRNOT00000013296 2 1 1 107 10 65772770 65772946 AAGATCCAGGTGTGGTTCC 59 65773015 65773035 GTCTGGAAGAGAACAGTTTGG 59 NA Rattus norvegicus 81 Ttc37 ENSRNOG00000040297 ENSRNOT00000062017 1 1 1 80 2 2970753 2970771 GGTCAGTAACACTCAGCCA 59 2970812 2988122 TCTTTGTCCTTAAGTGAAGCAG 59 NA Rattus norvegicus 81 Tomm20 ENSRNOG00000019980 ENSRNOT00000027088 3 1 1 80 19 59865197 59865217 TACAACAGACTCTTCCACCAC 60 59863882 59865157 GAGCACTGACAATTCTCTGAC 59 NA Rattus norvegicus 81 Sec62 ENSRNOG00000009057 ENSRNOT00000012240 2 1 1 80 2 116219245 116219265 AGACTGCAGTACTTAGCTACC 59 116215968 116219203 AGATGGAAAGCGACTCTGG 60 NA Rattus norvegicus 81 Prcp ENSRNOG00000010630 ENSRNOT00000014271 1 1 1 80 1 157737525 157738757 GACTCTCAGATACCGGCAG 59 157738799 157738819 GCATCTTCTCAGAAGTCAAGG 59 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000019478 2 1 2 101 17 22635008 22635027 GGTATTCTGGTCCCTCTTCC 59 22635091 22639969 CTGCAGTTGTTCATTGCGT 60 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259,ENSRNOT00000083594 3 2 2 80 11 33964988 33965668 CTAGTTGAGGCTCTGGCTG 60 33965710 33965730 CTTCAGATATTCATGGTGGCG 59 NA Rattus norvegicus 81 Cplx4 ENSRNOG00000016928 ENSRNOT00000022718 1 1 1 80 18 61657432 61669853 TTCCGAAGAGTGAAATGGAC 58 61657371 61657389 CCATCTTTCGGAGATCCTC 57 NA Rattus norvegicus 81 Ccdc177 ENSRNOG00000033973 ENSRNOT00000040965 1 1 1 184 6 104408326 104408344 CAGGTAGGAAGAGCCACTC 59 104408160 104408178 TAGTGGGTTAGGTGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 2 2 2 80 10 90379805 90379824 TCCTGATGGCTACTCTTGTC 59 90379864 90380007 TCATCACAAGATACACCCTCAG 60 NA Rattus norvegicus 81 Slc35b4 ENSRNOG00000008851 ENSRNOT00000012179 2 1 1 80 4 61556961 61558165 GTTACTAGGTATTGGAGCACTG 58 61556902 61556922 TGTCTGTACAGAGTCTCTTGG 59 NA Rattus norvegicus 81 Cphx ENSRNOG00000025433 ENSRNOT00000035065 1 1 1 80 16 3790786 3790806 CTTATCCAGATTTCACGACCA 58 3788298 3790747 TCTGAAACCAGTTATCGATCAC 58 NA Rattus norvegicus 81 Mir1193 ENSRNOG00000041604 ENSRNOT00000063357 3 1 1 60 6 133864709 133864727 CTCTCAGGGTAGCTGTGAG 59 133864748 133864769 GACCTACAGCATAAATGAAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1355 ENSRNOG00000050126 ENSRNOT00000073059 1 1 1 60 10 12312342 12312360 CAATTTCCTGCTGGCTGTG 60 12312300 12312319 GTGTAAAGGGTGGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sertad3 ENSRNOG00000037690 ENSRNOT00000057190 2 1 1 60 1 84280977 84280996 GTTTGTCGAAGGTAGTCGTG 59 84283424 84283442 TTCCTCTTTAAGCCTCCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_10_0702.1 ENSRNOG00000052330 ENSRNOT00000090215 1 1 1 60 10 70476778 70476797 AGTAACGGACTTGGAGAAGG 59 70476819 70476838 AAGAAGGAGCAGTTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg9 ENSRNOG00000019596 ENSRNOT00000026669 2 1 1 84 1 81276854 81276872 TAGCTGCCTTCCTCTTCAC 59 81276920 81280337 TGCAGGAACCTGTACAGAC 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327,ENSRNOT00000038172 1 2 2 80 7 114305356 114305375 GATCCCTCTTCTCTGTGTCC 59 114299770 114305315 CACCGCTTCTTATAGTGTCTG 59 NA Rattus norvegicus 81 Figla ENSRNOG00000015877 ENSRNOT00000021272 3 1 1 81 4 117681137 117683200 AGGCCTCAGAGAAACAAGG 59 117683245 117683263 TCTCTAGTCGAGGACACGT 59 NA Rattus norvegicus 81 Elof1 ENSRNOG00000014284 ENSRNOT00000019140 1 1 1 104 8 23127091 23127110 ACGAGAAGTCTTGTGATGTG 58 23126583 23126872 CTGACAGGTATGTGATGGG 57 NA Rattus norvegicus 81 RT1-A2 ENSRNOG00000030712 ENSRNOT00000038660 2 1 1 83 20 5377256 5377368 CAGAGATGGGAGCCTTCTC 59 5377415 5377433 AGTTCCAATGATGGCTCCA 59 NA Rattus norvegicus 81 LOC102549198 ENSRNOG00000046839 ENSRNOT00000074629 3 1 1 60 18 55467201 55467221 TGTTTGAAGCAGAGGATTTGG 59 55467242 55467261 AAGGGAGGATTCTCAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065740.1 ENSRNOG00000061324 ENSRNOT00000073207 3 1 1 60 6 139997274 139997296 ACACAGTCATGTACTACTGTACC 60 139997236 139997254 TTTCCAAGTTCACACTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr875 ENSRNOG00000048675 ENSRNOT00000045810 1 1 1 60 7 3426002 3426025 GTGCTGTGTATCTATGTTGTTACC 60 3426041 3426062 CCAGAGTTAGGAAGACAATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360635 ENSRNOG00000016507 ENSRNOT00000022367 3 1 1 120 4 118172502 118172522 CATGTACAAGGAATACTGCGG 59 118172604 118174692 TGTTTCCTCGGATGACCAC 60 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122,ENSRNOT00000082030 1 2 2 80 10 70700142 70700267 GACACAACAAAGCTATTCTGG 58 70700309 70700327 CCATAACCGGAGTAACCAC 58 NA Rattus norvegicus 81 LOC290595 ENSRNOG00000043342 ENSRNOT00000065460 1 1 1 80 16 14358105 14360495 TCCTCAGAAGGGAGAAAGC 59 14358043 14358064 TATGGGTTTGGATCTAGGAGAG 59 NA Rattus norvegicus 81 Pik3r6 ENSRNOG00000003992 ENSRNOT00000005405 2 1 1 80 10 55115253 55115271 CCTCACTCCTAGACTCAGC 59 55115315 55116678 GATGCTTCTGGATCCTGTC 58 NA Rattus norvegicus 81 Vom2r70 ENSRNOG00000049387 ENSRNOT00000074712 2 1 1 80 14 314849 314867 GAAACAAACAGCAGACTGC 58 314910 337283 TGTTCCATATCTGCTGTCTC 57 NA Rattus norvegicus 81 Phtf2 ENSRNOG00000013517 ENSRNOT00000066739 1 1 1 80 4 10912766 10920544 CCTTTCCATCAGACTCATTTACC 59 10920584 10920602 GCCTTCCCACACTATAGCA 59 NA Rattus norvegicus 81 Phtf2 ENSRNOG00000013517 ENSRNOT00000066739 2 1 1 80 4 10912707 10912726 AGACAGATGTGGGAAATCCT 59 10912765 10920543 GTAAATGAGTCTGATGGAAAGGG 59 NA Rattus norvegicus 81 Cyp26b1 ENSRNOG00000015076 ENSRNOT00000020505 1 1 1 81 4 116265443 116265461 AGGTCATGAGGCTCTTCAC 59 116265030 116265398 GGGATCTGGAAACCATCCA 59 NA Rattus norvegicus 81 RGD1306271 ENSRNOG00000013729 ENSRNOT00000040391 3 1 1 81 4 65896155 65896177 CCTTTAATCCTGTCTGTGAAACC 60 65890214 65896116 GAGGCACAAACTGAAGTACTG 59 NA Rattus norvegicus 81 Ldah ENSRNOG00000021475 ENSRNOT00000030244 2 1 1 80 6 33428526 33428545 TATGGATCATCTCGCATGCT 59 33428588 33439114 GAGCATTTGGTTCCTGTGG 59 NA Rattus norvegicus 81 Jagn1 ENSRNOG00000009175 ENSRNOT00000012177 3 1 1 81 4 145400097 145403644 ATGCACTACCAAATGAGTGTG 59 145403687 145403705 CCAACAGCAGCCATATGAC 59 NA Rattus norvegicus 81 Glul ENSRNOG00000049560 ENSRNOT00000075480 2 1 1 81 13 71337142 71337163 GTATACTCTCATGGGAACAGAC 58 71337205 71337759 GCAGTAATAGGGTCCTTGG 57 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 3 2 2 80 8 4326271 4333302 GACGTATACAGATGCCAACC 59 4333344 4333363 CTGGCATTCCATTCTTCCAG 59 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 2 2 2 81 4 165427475 165427494 AACCTGTGGCTGTATATGTG 58 165427333 165427432 ATCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Aunip ENSRNOG00000022030 ENSRNOT00000039322 1 1 1 116 5 152732312 152732330 AAATGCTGACGTTGCTTCC 60 152732410 152733592 CATTTGCCATTCCTGGCTG 60 NA Rattus norvegicus 81 Aunip ENSRNOG00000022030 ENSRNOT00000039322 3 1 1 120 5 152732312 152732330 AAATGCTGACGTTGCTTCC 60 152732414 152733596 CCACCATTTGCCATTCCTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163,ENSRNOT00000083811 1 5 6 80 9 17348154 17348173 GATCAAACCTCACCAAAGCC 60 17348213 17348560 TCTTTCTTTGGTCTGCATTCAC 60 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 3 2 2 101 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914339 143914357 CTTAAGGCCACAACTTCCA 58 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000022082 ENSRNOT00000036247 2 1 1 80 4 117803569 117803802 CGTCGTGTCAGAAAGAACC 59 117803507 117803528 GACTTGTTCTGTAAGATGTGCT 59 NA Rattus norvegicus 81 LOC689412 ENSRNOG00000027254 ENSRNOT00000035431 1 1 1 80 13 65551154 65551218 GTTATCTGGTGTTGATAGCGA 58 65551260 65551278 GCACATAACCTCTGTCCTC 58 NA InUTR Rattus norvegicus 81 LOC100912195 ENSRNOG00000033844 ENSRNOT00000048996 1 1 1 109 1 116566378 116566715 ATAGGCCCAGGAGAAATGG 59 116566287 116566305 TTGATGGTATCTTGCGGCT 60 NA InUTR Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000082538 1 1 5 80 20 5416957 5416977 GAGAAACACAGGTGGAAAGG 59 5417383 5417402 AGAGACACATCAGAGCTCTG 59 NA Rattus norvegicus 81 Gabarap ENSRNOG00000017417 ENSRNOT00000023724 2 1 1 91 10 56601348 56601367 GTACAAAGAGGAGCATCCGT 60 56601421 56601980 TTTCCACTATCACCGGGAC 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 2 2 2 81 6 24163062 24163080 ATGATGAATGCTCCCTCCA 59 24163125 24181544 ATGGGTCGGGAAAGATCTG 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 3 2 2 80 19 10756663 10756682 GTACATTGAAGAGCAGTTGC 58 10756077 10756620 TCTTTATGGTGCTGCAGTG 58 NA Rattus norvegicus 81 Exoc6 ENSRNOG00000036601 ENSRNOT00000054748 2 1 1 80 1 256286664 256286682 TGCTGACCAGGATTCTGAG 59 256286725 256287667 TAATTTGCACCAGCTCTGTC 59 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995,ENSRNOT00000067135 2 2 2 80 13 69928458 69929809 ACTACATTGAGGGTGGACTG 59 69926061 69926081 ACTGTAGGAGCTTTATCTGGG 59 NA Rattus norvegicus 81 Slc25a35 ENSRNOG00000004668 ENSRNOT00000006597 2 1 1 86 10 55557906 55558235 CCAGTGGGAGATCTTTCCTC 60 55558284 55558302 GTCATGGCCAGGACTACTG 60 NA Rattus norvegicus 81 Stk35 ENSRNOG00000006002 ENSRNOT00000008071 1 1 1 80 3 122310534 122318084 CTCGCTCAAAGGAGAAAGG 58 122318128 122318146 CCACCTTCACAGTACTCCA 59 NA Rattus norvegicus 81 Stk35 ENSRNOG00000006002 ENSRNOT00000008071 2 1 1 80 3 122310535 122318085 TCGCTCAAAGGAGAAAGGA 59 122318129 122318147 TCCACCTTCACAGTACTCC 58 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 2 2 2 80 14 786147 786168 GACATACAATCTGAACATGGGA 58 786205 786228 CAAATATCCCAGTAAGTGGAAGG 59 NA Rattus norvegicus 81 Dnmbp ENSRNOG00000050742 ENSRNOT00000074810 1 1 1 80 1 263643194 263644341 GGATCTAGTGCTTAAGTACCG 58 263643134 263643153 ATGATGGAGTGGATGTTGAG 57 NA Rattus norvegicus 81 RGD1311863 ENSRNOG00000012872 ENSRNOT00000017405 3 1 1 80 1 234699018 234699038 AATCAGGAAATACTGCTGACC 58 234698236 234698976 TCCATTGGCATCTTCTCCA 59 NA Rattus norvegicus 81 Ctf1 ENSRNOG00000018962 ENSRNOT00000025646 2 1 1 89 1 199164446 199164464 CATTTGGAGGCCAAGATCC 59 199164517 199167088 TTGCTGCACATATTCCTCC 58 NA Rattus norvegicus 81 Olr1560 ENSRNOG00000050365 ENSRNOT00000075812 2 1 1 60 11 43710779 43710801 ACTTCTGTTCCTAGTGTTCTCTG 60 43710821 43710839 CAGCCCAAGATTCCCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec14a ENSRNOG00000022697 ENSRNOT00000030706 1 1 1 60 6 79305256 79305274 CAGGAAGTATGATGCCCAC 58 79305214 79305233 TCGAAAGTCAGAGAAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glipr1 ENSRNOG00000026644 ENSRNOT00000005399 2 1 1 80 7 54775133 54775155 GAAAGCCAGTACTATGACTTCAG 59 54771127 54775095 ACTATCTGCCCAAACAATCTG 58 NA Rattus norvegicus 81 Adam6 ENSRNOG00000037524 ENSRNOT00000056829 2 1 1 60 6 138434459 138434479 TTGCTCCCAAACTAACTTCTG 59 138434498 138434519 ATCCAACCGAGATAAACTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065814.6 ENSRNOG00000060468 ENSRNOT00000071555 1 1 1 60 6 142385678 142385696 CATGAATTGGGTTCGCCAG 60 142385636 142385655 ACTTCTTATGTGAGCAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam216a ENSRNOG00000031731 ENSRNOT00000050398 1 1 1 80 12 39685841 39685864 CTATCTGAGGACCTTAATGAAGAG 58 39685903 39685994 TGATGAGTGAGGACACCTG 59 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544,ENSRNOT00000073286 2 2 2 80 8 85797326 85797345 TTATCAGCTACCAAGGTGCT 59 85795741 85797288 GGTGACATCTGTATCTTTGATCTC 59 NA Rattus norvegicus 81 Rps19bp1 ENSRNOG00000017847 ENSRNOT00000024085 2 1 1 60 7 121488732 121488750 AAAGAAGACTCCGAGTGCT 59 121488690 121488708 TTCTGGAACACCAACTCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem243 ENSRNOG00000042758 ENSRNOT00000066211 2 1 1 80 4 21919958 21919976 TACCAGGACCTATGGGACC 60 21905523 21919917 AAATTGATGATTCGGTCCTTGG 59 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631,ENSRNOT00000085414,ENSRNOT00000083623 2 3 3 87 16 10932306 10941154 CACTATCTCCCGGATCACC 59 10932237 10932255 GTTGACTCCATCAATGGCC 59 NA Rattus norvegicus 81 Mrgprh ENSRNOG00000014965 ENSRNOT00000020070 2 1 1 60 1 48069585 48069605 TTTCCTGTACCTTGACTTTCC 58 48069545 48069566 AGTATCAAGTTCGAGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vgll3 ENSRNOG00000028774 ENSRNOT00000042316 3 1 1 100 11 3142743 3142761 ATCTGACTACAGCCACCAC 59 3142824 3164520 ATGCTGAAGACCTGTTTCGA 60 NA Rattus norvegicus 81 LOC365287 ENSRNOG00000012345 ENSRNOT00000016461 2 1 1 60 1 135226752 135226771 AAGGACGATGAAGTTCAGGT 59 135226711 135226729 TCACTTTGCCAATCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pptc7 ENSRNOG00000021440 ENSRNOT00000036137 1 1 1 60 12 39734186 39735078 GGATTAAATGTGAGAGGTGGA 58 39734146 39734164 CAGCCACTATTGAGAGGAG 57 NA DesignRelaxed Rattus norvegicus 81 Rn60_1_1373.2 ENSRNOG00000051334 ENSRNOT00000076469 1 1 1 60 1 136285227 136285248 CCCTACAGTTAGATACTACACC 57 136285269 136285287 GAGTTCTTTCAGGCTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eps8l2 ENSRNOG00000018336 ENSRNOT00000024725 1 1 1 80 1 214352424 214352588 TCCTGGAGAAACAACAAAGTG 59 214352630 214352648 CGTTGGAATAGCTGTCCTC 58 NA Rattus norvegicus 81 Hvcn1 ENSRNOG00000001270 ENSRNOT00000001712 1 1 1 80 12 39825167 39825432 CGGTCAAGAAGTATTCCACG 59 39825106 39825124 TAAGGGAGATCTCCAGCAC 58 NA Rattus norvegicus 81 Trpc7 ENSRNOG00000012727 ENSRNOT00000016982 3 1 1 80 17 8276758 8276779 GCGTCTCATTAAGAGATACGTG 59 8276817 8278989 ATCTCTTTGAGTTCACCTTCGT 60 NA Rattus norvegicus 81 Orc4 ENSRNOG00000005021 ENSRNOT00000006937 3 1 1 81 3 33058967 33058987 AATCATGCCTTGAAAGAGCTC 59 33058533 33058927 TCTGTAGCAGTCCATTTAAGTG 58 NA Rattus norvegicus 81 Mep1a ENSRNOG00000011022 ENSRNOT00000014791 3 1 1 82 9 20052625 20052643 ACCAGAAATGCCCTGAGAG 59 20052688 20056367 GCGTTCAGATCCAGATTGTC 59 NA Rattus norvegicus 81 LOC687609 ENSRNOG00000042607 ENSRNOT00000064390 2 1 1 88 12 38880583 38880859 CATTTCCCGAGCACTATGC 59 38880911 38880929 GTAGAGGTTCAGGGTCACC 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000016967,ENSRNOT00000066780 1 3 3 80 2 257466958 257466976 GCAGAAGAGGAAGCAAGAC 59 257465149 257466915 CTCCTCGTTTACCATGTTCC 58 NA Rattus norvegicus 81 Dusp22 ENSRNOG00000056376 ENSRNOT00000090946 2 1 1 80 17 35025620 35025638 AATTGAGCAGGAACAAGGT 57 35002989 35025578 ACAGGTATTTAACTCCCTCCA 58 NA Rattus norvegicus 81 Ap4b1 ENSRNOG00000019455 ENSRNOT00000026382 1 1 1 80 2 206297001 206297375 TGAAGTAGATGGTGCTCTAGTC 59 206297415 206297434 CTCAGACAGTTCACAACCAC 59 NA Rattus norvegicus 81 Fancd2os ENSRNOG00000010177 ENSRNOT00000013503 3 1 1 97 4 145553530 145553910 GTCACACTGACTGTCAATGG 59 145553452 145553472 AAGGAGTAGGTGTTGTATGCC 60 NA InUTR Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388,ENSRNOT00000042072 3 2 2 83 1 25520232 25520250 AAGAGATTGCTCCTGCCTC 60 25454234 25500866 CATCTTTGCCTTGCTCCAC 60 NA Rattus norvegicus 81 Prdx1 ENSRNOG00000017194 ENSRNOT00000023132 2 1 1 81 5 135545433 135551672 TGACAAACATGGTGAAGTGTG 59 135551709 135551733 CTCTTTACTCTTATTGACATCAGGC 60 NA Rattus norvegicus 81 Tktl1 ENSRNOG00000055557 ENSRNOT00000091029 1 1 1 80 X 156524138 156524156 ATCAGATTCGAGTGGGAGC 59 156514455 156524096 TGTCATCACCAGTAGATACCC 59 NA Rattus norvegicus 81 Idua ENSRNOG00000000043 ENSRNOT00000000048 1 1 1 80 14 2045662 2045975 GATACATTGGTAAGTATGGGCTG 59 2045604 2045622 CAAAGTCATGGTGGTCTGG 59 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702,ENSRNOT00000015632 1 2 2 82 17 9314155 9320750 GAAGTCTAAGAAGCAGGGAG 57 9320795 9320813 CAGTAAAGCCGTCTGTAGG 58 NA Rattus norvegicus 81 LOC100912707 ENSRNOG00000049299 ENSRNOT00000040386 2 1 1 60 3 16413122 16413141 GTCTTCATATTCCTGCTGCT 58 16413347 16413366 ACTGAGTCATCACAATGTCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911625 ENSRNOG00000048365 ENSRNOT00000005535 2 1 1 80 9 20257117 20257617 CCGGAACTATCCTGTGGTC 60 20257661 20257679 ACATTGGCTGTGAACTTGG 59 NA Rattus norvegicus 81 LOC100911426 ENSRNOG00000032062 ENSRNOT00000043603 3 1 1 69 1 66963281 66963302 CTGCCTATTAAGAGATGCAAGC 60 66963328 66963782 ACCTTAGAACTGGATCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Rbm24 ENSRNOG00000046547 ENSRNOT00000072682 3 1 1 81 17 18682731 18682752 AAAGATCTTCGTGGGAGGG 59 18682665 18682683 CTCGATGTCTCCGAAGACC 60 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 2 2 2 80 X 156434861 156435189 TTAGTTCAGATCCTAGCCCG 59 156435228 156435250 TAGAAAGAGGACAGTATTCTGGG 59 NA Rattus norvegicus 81 Odf3l2 ENSRNOG00000008199 ENSRNOT00000010832 1 1 1 81 7 12945100 12945118 GACCCGAAAGTTACTCGCT 60 12945160 12946505 CCTCCAGACCTCTAATCTTACC 59 NA Rattus norvegicus 81 Slx4 ENSRNOG00000024445 ENSRNOT00000033919 2 1 1 80 10 11793438 11795647 GTACCCAGTTTCAGCAACC 59 11795691 11795709 TTTCCATCTCCTCTGTGGC 59 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 2 1 2 93 4 39519675 39519694 GGACAGGAAGAATCCCTAGG 59 39522599 39526701 TACAGCTTTGTTCTTCTTGGTC 59 NA Rattus norvegicus 81 Cdkn2aip ENSRNOG00000022736 ENSRNOT00000030519 1 1 1 88 16 47666983 47667569 ATATCGAGTAGCAATGAAGGG 58 47667619 47667637 CCATGATCTCGCTCAACTG 58 NA Rattus norvegicus 81 Sbspon ENSRNOG00000007258 ENSRNOT00000009530 2 1 1 80 5 2835813 2835832 TCTGCCTTCAACAAGAAGAG 58 2835873 2837477 CATACAGTATCCAGCATCCTC 58 NA Rattus norvegicus 81 Emd ENSRNOG00000058882 ENSRNOT00000080990 3 1 1 80 X 156455241 156455397 GTTCTCAGACTTGGATTCAGC 59 156455181 156455200 CTCTGGTAAAGTAAGGCGTC 58 NA Rattus norvegicus 81 Lrp3 ENSRNOG00000011451 ENSRNOT00000015384 1 1 1 80 1 91451858 91452188 CCTATATCCGAGGGAAGCTG 59 91451797 91451815 GACCAGGCAAGCATTTACC 59 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904,ENSRNOT00000036642 1 4 4 80 8 125086629 125086647 GACACGTGATATCCACCAG 58 125070951 125086585 CAGTAGACTCCATTCTGGC 57 NA Rattus norvegicus 81 Fut2 ENSRNOG00000021011 ENSRNOT00000028519 2 1 1 80 1 101634402 101639593 TTAAATCCAGCAGCCATGG 58 101634340 101634360 AGTCACGAAGACAAAGATGAG 58 NA InUTR Rattus norvegicus 81 Lyve1 ENSRNOG00000026902 ENSRNOT00000030474 3 1 1 82 1 175673155 175673173 AAGGTTCTGGGACTGACTC 59 175672992 175673110 CATCCATAGCTGCAAGTCTC 59 NA Rattus norvegicus 81 Msh3 ENSRNOG00000013673 ENSRNOT00000018449 3 1 1 80 2 21918819 21920371 TGGAGAAGATGTGAATCCTCTG 60 21918760 21918782 TAGTTGGTAGAAGTATCCGTCAC 60 NA Rattus norvegicus 81 AABR07002044.1 ENSRNOG00000048100 ENSRNOT00000029893 3 1 1 82 1 65294747 65294768 GGACTAAGTTTGGTCACAACTG 60 65294807 65295168 CCGTAAGTAAGATGACAGAACTG 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000077874 1 1 2 60 13 73708896 73718241 AAACCTGGCTGGAAATTGTG 59 73718264 73718282 TTGCTGGTGTTGAGTTTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AC139976.1 ENSRNOG00000059843 ENSRNOT00000078098 3 1 1 136 6 101868038 101873400 CCTCCATTGTTGGGTTGTG 59 101865080 101865099 AAGTATGATGGGATGCCGAG 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821,ENSRNOT00000038396 1 2 4 80 4 167421968 167483623 AACTCAACCTGAGGAATCCA 59 167483665 167483684 TCAGGTTGAGTTTCCTGTCC 60 NA Rattus norvegicus 81 Col28a1 ENSRNOG00000033618 ENSRNOT00000045270 2 1 1 80 4 34121243 34121807 CCATCTGGACCAAAGGGAG 60 34121181 34121200 TGGTCCTCGAACAGAAAGTC 60 NA Rattus norvegicus 81 LOC497940 ENSRNOG00000015975 ENSRNOT00000021402 1 1 1 80 10 56508618 56509659 ACACCAATGATTCTGCTACCT 60 56508558 56508577 GTTGTAAAGTAGCCAGCTCC 59 NA Rattus norvegicus 81 RGD1559724 ENSRNOG00000034203 ENSRNOT00000047882 2 1 1 60 6 75470256 75470274 CAGCCTTCCTCACAAAGTC 59 75470214 75470233 AACTTGACTATGTCCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr576 ENSRNOG00000047926 ENSRNOT00000071529 3 1 1 60 3 75719648 75719669 ATTTCTGGAGTCCTTGTATCCT 59 75719609 75719629 CAGAGCAAATCTTCAAGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000079152 2 1 2 80 13 74462844 74470798 GACTTTCATCAATGAAGGACCA 59 74470838 74470857 ATCATGTAAATCCCACTGGC 58 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000065801 1 1 2 80 13 74456763 74462021 TTTCAACACCAAAGACGCTG 60 74462060 74462082 TAGGAAGAGTACCACACTTAGGA 60 NA InUTR Rattus norvegicus 81 Dedd2 ENSRNOG00000046112 ENSRNOT00000072616 2 1 1 124 1 82074122 82081601 AAGGTGACCTGTGACATCC 59 82074016 82074034 TGTCCAAACACATCCAGCT 60 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 1 2 3 101 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967714 22967732 GTAGAAGGGATGGGACAGG 59 NA Rattus norvegicus 81 Ubap1 ENSRNOG00000012004 ENSRNOT00000063849 3 1 1 80 5 57776507 57776529 CATGGGCTACTCATATGATTGTG 60 57776566 57777293 AAGAGATAGTCGAGAATCTGCT 59 NA Rattus norvegicus 81 Sult6b1 ENSRNOG00000049335 ENSRNOT00000075000 3 1 1 80 6 1480872 1480892 GAATTCTGACAACTCACCTCC 59 1477751 1480833 GAAACATCACCAATATCTTGGC 58 NA Rattus norvegicus 81 Txndc5 ENSRNOG00000013469 ENSRNOT00000018310 1 1 1 83 17 26944692 26946875 AGATTGGCAAGGTTGACTG 58 26946922 26946940 GAAACCAGAGCAGAGTTGG 59 NA Rattus norvegicus 81 Hist3h2bb ENSRNOG00000031790 ENSRNOT00000041187 3 1 1 60 10 45297086 45297104 CGTCAACGACATCTTCGAG 59 45297044 45297063 CTTGTTGTAATGAGCCAGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Suclg2 ENSRNOG00000005686 ENSRNOT00000068274 1 1 1 80 4 127579950 127579968 TCATTGCCAACGGAATCAC 59 127553129 127579909 CATTAGTTCCTTCAAGACGGAC 59 NA Rattus norvegicus 81 LOC100910170 ENSRNOG00000049242 ENSRNOT00000047899 1 1 1 60 7 16035838 16035857 TTCTCCTTGCTATCATGTCC 57 16035797 16035817 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000084553 2 2 3 80 12 37408213 37408232 TTGTTTGGAGAAGATGCCTC 58 37405547 37408171 GACATTCTCCCTGAGTTGTG 58 NA Rattus norvegicus 81 Crisp1 ENSRNOG00000013612 ENSRNOT00000040542 1 1 1 80 9 24371381 24373659 GTTGTGACTCTCAGACATCTC 58 24371321 24371340 TTCCTGTGGTTCAGTTTGTG 59 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 1 3 3 85 7 107198092 107203731 AGTTAAAGTGGTTGGATGGC 59 107198026 107198045 GATTTGCTGTTCAACTGCTG 58 NA Rattus norvegicus 81 Golm1 ENSRNOG00000018400 ENSRNOT00000037597 3 1 1 80 17 5405477 5405495 AACAAGTCCCAAGTACCAG 57 5405538 5406854 AATCTCATTGGTTTCCTCGT 57 NA Rattus norvegicus 81 AABR07062268.1 ENSRNOG00000027431 ENSRNOT00000038077 2 1 1 81 4 166617034 166617054 GAAGTGTAAATTCGAGAGGCA 59 166615818 166616991 GAGATCCAGCCTGTAGTCC 59 NA Rattus norvegicus 81 Qrich2 ENSRNOG00000025254 ENSRNOT00000034817 1 1 1 80 10 105405562 105405668 GACATCGAAGTGCTGTATCAG 59 105405502 105405521 GTCAATCTCCATCTCCAGGT 59 NA Rattus norvegicus 81 Hoxc5 ENSRNOG00000016598 ENSRNOT00000022247 1 1 1 84 7 144628625 144628643 GACCAAACTGCACATGAGC 60 144629380 144629398 TTTCTCGAGTTCCAGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Stac ENSRNOG00000008865 ENSRNOT00000011780 2 1 1 80 8 119844233 119844252 CAGATGAACACCTACGTTGC 59 119829585 119844190 GATCATGTCTCCTGGCCTC 60 NA Rattus norvegicus 81 Sp110 ENSRNOG00000033747 ENSRNOT00000056995 3 1 1 80 9 92601915 92601933 ACGTGAAGGTAGTGACCAG 59 92600408 92601873 CTTCCTTGCTGATCTCTTGAG 59 NA Rattus norvegicus 81 Zfp526 ENSRNOG00000047526 ENSRNOT00000071251 3 1 1 98 1 82090558 82090577 GATAGTGAAGGGTCCCACAC 60 82093375 82093393 CACCATCTCTGCCATTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Gltpd2 ENSRNOG00000026488 ENSRNOT00000029230 3 1 1 113 10 57126794 57126901 ACTACTTAGGCTCCTAACCC 58 57126977 57126995 TAATGTGAAGCATCAGGGC 58 NA Rattus norvegicus 81 Slc18a2 ENSRNOG00000008890 ENSRNOT00000011983 3 1 1 86 1 280447168 280448747 TTTGCAATTGGGATGGTGG 59 280448795 280448815 AACACTCCCATAGACAGACAC 60 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 3 2 2 80 9 27447843 27447862 GTCCTTCACTACTTCGATGG 58 27442412 27447802 TTCTTCAAACTCTACTCCAGC 58 NA Rattus norvegicus 81 RGD1564469 ENSRNOG00000031358 ENSRNOT00000040909 1 1 1 60 2 206903680 206903699 TCACTCCATCATCAATGGGT 59 206903721 206903740 AGTGTAGTCAGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410,ENSRNOT00000087912 3 3 6 65 20 4614037 4614056 ACACGATCACGATTTCAACC 59 4614208 4614226 ATGATGACTGAGCCGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ncapg2 ENSRNOG00000004968 ENSRNOT00000035255 2 1 1 80 6 144309119 144309137 AGGACTTCATGTTCCACGG 60 144309178 144310531 GAAAGTAACTCAACACCTCTCG 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398,ENSRNOT00000065171 1 2 2 80 9 104842585 104850377 AAAGCAGTTGGACATGTTCAG 60 104842525 104842543 TGCAAATACAGCAACAGCA 59 NA Rattus norvegicus 81 Map3k14 ENSRNOG00000003278 ENSRNOT00000004532 3 1 1 81 10 91326082 91326103 GTGAGAATAGCCAAGAGTTCAG 59 91324737 91326041 CTCTCAGACTGGCTGTACTG 60 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 1 2 2 82 9 19452868 19454541 TTAGGTGACCATGGCTATGAC 60 19454585 19454603 TAGCCTTTCCTGAAGGCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC688459 ENSRNOG00000048967 ENSRNOT00000073595 3 1 1 84 9 23421369 23421387 CCTGAGATGTCCTCTGTGG 59 23421433 23424327 AAATGTTCTTCACCACCAGTG 59 NA InUTR Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090,ENSRNOT00000058689 1 2 2 80 13 84588750 84591518 ACAACGTGAAACAATACTGGG 59 84591560 84591578 GAGCTTCAAGGTCGAACTC 58 NA Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000041550 3 1 2 84 9 91668214 91674224 AATTGAGATGGTCACGTATCTG 58 91668151 91668169 CTCAATGACTGGCTTCTCG 58 NA Rattus norvegicus 81 Tnfrsf21 ENSRNOG00000011517 ENSRNOT00000015918 3 1 1 80 9 20596908 20596927 GCTGAAGAAGTCCTTGACTC 58 20568497 20596866 TTCAGGATGTCAATACCGTG 58 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973,ENSRNOT00000080188 3 2 2 80 10 109585624 109585644 CACAGAGCACAAAGACATTCC 60 109583050 109585585 TTCTGTGTACCAATCTGAGGAG 60 NA Rattus norvegicus 81 LOC102551069 ENSRNOG00000040063 ENSRNOT00000061605 1 1 1 118 11 28940551 28940611 GGCTATGGCTATGGAGGTC 59 28940451 28940469 TATCTAGAGCCACAGCCAC 59 NA Rattus norvegicus 81 Fbxl7 ENSRNOG00000024433 ENSRNOT00000031170 2 1 1 80 2 79077698 79077717 ATATCTCCAATGAGGCGGTC 60 79071217 79077655 CTTTGGAGCATCCTGACAC 59 NA Rattus norvegicus 81 Xkr4 ENSRNOG00000027276 ENSRNOT00000029503 3 1 1 96 5 16003762 16139194 AGTCTGGAGGTATTTGCAC 57 16003684 16003702 CTCGTACACCATCTTCCAG 57 NA Rattus norvegicus 81 AABR07072539.1 ENSRNOG00000031716 ENSRNOT00000043852 1 1 1 80 17 15549813 15549834 GTTGCATTTATGGAGACTTCAC 58 15548026 15549772 TTGAATTCCCAACCAGCTC 58 NA Rattus norvegicus 81 Etv6 ENSRNOG00000005984 ENSRNOT00000007889 3 1 1 80 4 167754722 167856697 AGCATTAAGCAGGAACGGA 59 167856740 167856759 AACATGAAGTGGAGTCGAGG 60 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000055235 3 1 3 80 1 167334079 167334099 AACTTCATCTCCTTCTTCTCG 58 167334140 167334330 AAAGATGGTGTACACTCCAG 57 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000076356 2 1 2 80 16 81231349 81233293 AAGATATCAAGAGTGCATGAGG 58 81231290 81231311 CACTTACTCTTAACACAGGTGG 59 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 3 3 3 124 5 2051971 2054771 AACACAATGGATGGAGAGG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 AC121204.1 ENSRNOG00000039439 ENSRNOT00000060436 3 1 1 88 5 58967822 58967862 AGAGTCCTCGAAACCATCG 59 58967913 58967932 AAGTCCTTGGTGGTGATCTC 60 NA Rattus norvegicus 81 Fra10ac1 ENSRNOG00000015235 ENSRNOT00000020620 1 1 1 80 1 256903767 256904736 AGCAGACATGACTTGGGAG 59 256903705 256903728 CTGAGATCTGCTATGCAATATTCC 60 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 2 2 2 80 8 76407611 76407630 AAGGTGGAGAAGTTGACCTG 60 76407672 76409501 TGGGAAGATCATCTTCCCAC 59 NA Rattus norvegicus 81 Zscan10 ENSRNOG00000021782 ENSRNOT00000036563 2 1 1 98 10 12936581 12937704 AAACCCTCTTGGAGTTGGA 59 12937766 12937784 TTGTCTGTCTGGGACTCTG 59 NA Rattus norvegicus 81 LOC689725 ENSRNOG00000026195 ENSRNOT00000038369 2 1 1 81 9 32868211 32868231 TACTGATCCCATTCCTGAAGG 59 32866830 32868168 CTCCTCTTCACCACCTCTG 59 NA Rattus norvegicus 81 Ghrl ENSRNOG00000010349 ENSRNOT00000014103 1 1 1 81 4 145677977 145677995 ATGCTCTGGATGGACATGG 60 145677340 145677933 TGGATTCCTTTCTCTGCTGG 60 NA Rattus norvegicus 81 Plgrkt ENSRNOG00000015932 ENSRNOT00000021544 1 1 1 80 1 247504943 247504961 CTGGTCTCGGGAATTCCTC 60 247504307 247504899 CGCTTTATTGCTCCAGCTG 60 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481,ENSRNOT00000045373 2 2 2 80 5 5290277 5290295 AAGATATTCCTCGCCAGCT 59 5290337 5290453 GATGGTTCAAGTTCAGAAGGT 58 NA Rattus norvegicus 81 Atf7ip2 ENSRNOG00000025522 ENSRNOT00000039429 1 1 1 82 10 5511863 5511881 GATGGAGATCCTGAACCAG 57 5508325 5511818 TCTGATTATGGCCATTTGGA 57 NA Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990,ENSRNOT00000087764 1 2 2 60 5 136124503 136124523 AGAACCTGGCCAAGTATAGTG 60 136126935 136126955 GTGTATCGGATCACAATGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990,ENSRNOT00000087764 2 2 2 60 5 136124504 136124523 GAACCTGGCCAAGTATAGTG 58 136126937 136126956 CGTGTATCGGATCACAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990,ENSRNOT00000087764 3 2 2 60 5 136124503 136124523 AGAACCTGGCCAAGTATAGTG 60 136126936 136126955 GTGTATCGGATCACAATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Slc9a1 ENSRNOG00000007982 ENSRNOT00000011049 1 1 1 80 5 151574177 151574198 GACTACTTACATGTACGCACAC 59 151574234 151613833 CACATGGAAACCTATCTTCATGAG 60 NA Rattus norvegicus 81 Casp7 ENSRNOG00000056216 ENSRNOT00000080511 2 1 1 80 1 277233388 277233407 ATGGACTTCGAGAAGATGGG 59 277233449 277233912 ATTCCGGACATCCATACCTG 59 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000076651 2 1 2 88 20 5107634 5107652 ATAGGCTGCATTTCTGGGT 59 5107308 5107588 CGAACCTTAACATTCTGATAGATGG 60 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 3 2 2 80 3 46683305 46683497 GTCGGAGATACAGCATCCT 59 46683243 46683264 AGGCTTGATGATAAGTTTCCTG 59 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 1 2 2 81 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718827 143718846 TCCGTTTGTTTGACTTTCCA 58 NA Rattus norvegicus 81 LOC100909683 ENSRNOG00000046224 ENSRNOT00000071599 1 1 1 60 7 15722794 15722814 CCTTCACATTTGGCTACACTC 59 15722754 15722772 ACATAGCGGTCATAACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc7 ENSRNOG00000013078 ENSRNOT00000017707 1 1 1 80 5 60393162 60393183 GTGACCGATGTGATATGATAGG 58 60405572 60424050 CAGGTTTGGTCGTTAGGTG 59 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 1 2 2 87 4 67370718 67370736 GAAGAACACCCTCACACTG 58 67371886 67372035 CAGCTTCACCTTATGGGTC 58 NA Rattus norvegicus 81 Zfyve28 ENSRNOG00000014874 ENSRNOT00000020154 3 1 1 80 14 81807198 81808355 GAAGCTAAAGAAGGTAACCCAG 59 81808395 81808414 GAGGATGACACAGTTTCCTG 58 NA Rattus norvegicus 81 LOC100365588 ENSRNOG00000053283 ENSRNOT00000080171 1 1 1 144 10 87516945 87516963 AACTGCCGTGTTAGATGGT 59 87516819 87516837 GTCCACAGTAGGATGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37a ENSRNOG00000012001 ENSRNOT00000016321 3 1 1 82 16 54863646 54863664 CCGAAGATTTCCTGGAGGG 60 54862590 54863603 TCTACAGTGGCAAATTGTTCTC 59 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 1 1 1 88 11 28973569 28973587 TACTATGGCTGTGGCTACC 59 28973475 28973518 CCATAACCACAGCCATAGAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC678817 ENSRNOG00000030039 ENSRNOT00000059380 1 1 1 80 2 90567876 90568460 CTTTCTACAAAGATCCGTTCGT 59 90567817 90567840 GCAATATCCTCAGTGAATATCTCC 59 NA Rattus norvegicus 81 LOC678817 ENSRNOG00000030039 ENSRNOT00000059380 3 1 1 80 2 90521643 90526370 GTCCTACAGAGAAATATGAAGGC 59 90521585 90521606 ATTTCTTTGCAGGTCGTAATGG 60 NA Rattus norvegicus 81 Spint5p ENSRNOG00000014807 ENSRNOT00000051826 2 1 1 88 3 161178310 161179452 ATCTTGGAAGCAACCAACC 58 161179504 161179522 TTCACATAAGGCTGTGTCC 58 NA Rattus norvegicus 81 Mir196a ENSRNOG00000035614 ENSRNOT00000053737 3 1 1 64 7 144584265 144584286 GTTTCATGTTGTTGGGATTGAG 59 144584311 144584329 CGACTGATGTAACTCAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1196 ENSRNOG00000048325 ENSRNOT00000044652 2 1 1 60 8 40259422 40259442 CGTCTATGTGATGGGTTTCTC 59 40259462 40259482 GGTCAGATTCATTAGGTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 2 2 2 80 7 18600668 18600687 TTGTCCTTCATTGAGACCTC 57 18599925 18600626 ACGGTAGATTTCTGTGAGGA 58 NA Rattus norvegicus 81 Tmx2 ENSRNOG00000005308 ENSRNOT00000007914 2 1 1 81 3 72073862 72074351 TTTCTGAGGAGAATGTGATTCG 59 72073802 72073821 ATGTCTCCACCCTTTGAGAG 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809,ENSRNOT00000015127 1 2 2 80 16 54479171 54479189 ATACGTCACGGTTGGAGAG 59 54478252 54479128 ACACTGGACGTACCTATGAC 59 NA Rattus norvegicus 81 Trpm3 ENSRNOG00000027770 ENSRNOT00000018521 2 1 1 80 1 240510726 240510745 TCACAGTGTTTCGAATGGGA 60 240510786 240656529 CATTGGCTCCTTTGAGTAGTG 59 NA Rattus norvegicus 81 AABR07065778.3 ENSRNOG00000048159 ENSRNOT00000073446 3 1 1 94 6 141062409 141062536 GATGTCCAGTGTGAAGTACAG 59 141062335 141062353 GTGTACCCTGAGGCTACAC 60 NA DesignNoJunction Rattus norvegicus 81 Mzf1 ENSRNOG00000027550 ENSRNOT00000058563 2 1 1 80 1 65523527 65523946 TGATGGAGAATCCAGAGCT 58 65523989 65524008 CCACCTTAGGTAGGAGAGTG 59 NA Rattus norvegicus 81 Foxg1 ENSRNOG00000047891 ENSRNOT00000075349 3 1 1 60 6 69971673 69971694 GGACATGGGAGATAGGAAAGAG 60 69971715 69971733 GCTGTTGATGCTGAACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000077032 2 1 3 60 20 5118418 5118436 GATGTGGTCTTGGTGAGTG 58 5118458 5118478 GTGCTTTCAGATTTCCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anapc5 ENSRNOG00000001316 ENSRNOT00000001794 3 1 1 80 12 39216296 39216316 AAGAGGAGGTATCTTGCAGTG 60 39216358 39220750 TCTTCAACAAAGCAGCCTG 59 NA Rattus norvegicus 81 Lrpprc ENSRNOG00000005877 ENSRNOT00000008200 1 1 1 80 6 8007856 8008528 GCCAATAATCAGGTTGAAACTC 58 8007797 8007816 GTACATCTGGTCTCTGTCAC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734,ENSRNOT00000007998,ENSRNOT00000080581 3 3 3 85 3 129783241 129783259 CCGTCATATGGCCCTAGAC 59 129783308 129787087 TGTTGGAGTCAGCCTTCTC 59 NA Rattus norvegicus 81 Magix ENSRNOG00000010092 ENSRNOT00000013553 3 1 1 81 X 15672445 15672467 CTGCAGATATAGAAGTTGCAGAC 59 15672506 15673932 GTGTCAGATCTTTGATGCTGG 59 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 1 2 2 80 7 2703637 2705755 TCATCGTGATCTCTAACAGACAG 60 2705795 2705813 CCAGCTCTAAGGACTCTGG 59 NA Rattus norvegicus 81 Fam168b ENSRNOG00000023467 ENSRNOT00000039480 2 1 1 87 9 41321592 41331511 GATATCCAGCTGGTTTCCC 58 41321523 41321541 GTTTGGAAGGTAGGGTTCG 58 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 2 3 3 101 4 149972344 149976982 TCTGTGGTGGTTCTTTAAGC 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sos1 ENSRNOG00000007106 ENSRNOT00000009359 3 1 1 80 6 3140566 3141330 CGAAGACTGAGTGAGTCTG 57 3140504 3140524 CTCATTCATCTTCTTGATGGC 57 NA Rattus norvegicus 81 Gpaa1 ENSRNOG00000029280 ENSRNOT00000048706 1 1 1 80 7 117395804 117395824 AACAGAACATGATCTTCTGGG 58 117395866 117395972 GGAGATGACTGTATGCCTG 57 NA Rattus norvegicus 81 Ppargc1a ENSRNOG00000004473 ENSRNOT00000006071 1 1 1 80 14 63170752 63171265 GTAGATCCTCTTCAAGATCCTG 58 63171305 63171324 CATACAAGGGAGAATTGCGA 58 NA Rattus norvegicus 81 Gns ENSRNOG00000047350 ENSRNOT00000064349 1 1 1 80 7 63494447 63494468 TGGTGGAATATCAAGGAGAAGG 60 63494507 63495182 GGAAACATTGAGACACTCCAG 59 NA Rattus norvegicus 81 Ppapdc3 ENSRNOG00000010068 ENSRNOT00000013507 2 1 1 64 3 11115219 11115237 AAGAGGTGCTCATGAACCT 59 11129175 11129193 CTGTACTCCAGCCACTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Tyk2 ENSRNOG00000032948 ENSRNOT00000041678 3 1 1 80 8 22125684 22125780 TCCCTGTGAGATCTATCACCT 60 22125624 22125642 GGCACAAGATTCTGGAACG 59 NA Rattus norvegicus 81 Dcstamp ENSRNOG00000004704 ENSRNOT00000006243 1 1 1 60 7 78649947 78649965 GCCTGGACAAACTTCATCC 59 78649989 78650007 TTACCGAAAGGAGAGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morn5 ENSRNOG00000026111 ENSRNOT00000036495 1 1 1 80 3 15382927 15382945 ATGGAACCCTGTTCTTCCC 59 15382989 15384955 AGGTATACTTGCCCGACAC 59 NA Rattus norvegicus 81 Scimp ENSRNOG00000037409 ENSRNOT00000056608 2 1 1 132 10 57422780 57424725 TTAGACAAGGCAGGAACTGG 60 57419509 57419527 AAAGGTGAACTCCTGGGTG 60 NA Rattus norvegicus 81 Tnrc6c ENSRNOG00000022395 ENSRNOT00000040629 1 1 1 80 10 106732033 106734570 AAAGGACTTCAGAAGGGCA 59 106734613 106734632 TGTGAGTTGTTTGATCAGCC 59 NA Rattus norvegicus 81 Dopey1 ENSRNOG00000022847 ENSRNOT00000014783 1 1 1 80 8 94193947 94195078 GAGCCACAAAGAACTTGAGAC 60 94195119 94195138 CAGCCATGAAATGAACACCA 59 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 1 2 2 89 1 99534190 99537395 ATCAGAGGTGTGGTCAAGG 59 99537448 99537466 TTACTCTTGATGCGTCCCT 58 NA DesignNoJunction Rattus norvegicus 81 Arid2 ENSRNOG00000004831 ENSRNOT00000006970 3 1 1 80 7 137751518 137751631 AGGCTCATGAAGATACACCAG 60 137751673 137751691 CGATGTCGTTAATGCCCAG 59 NA Rattus norvegicus 81 Lmbrd1 ENSRNOG00000012178 ENSRNOT00000016887 2 1 1 80 9 31025677 31025700 ATGATCTATAGTCTTGCTCCTCAG 60 31025734 31029299 GGCATCAGAAGTTATATTGCTCTC 60 NA Rattus norvegicus 81 Trim66 ENSRNOG00000014373 ENSRNOT00000019368 2 1 1 80 1 174088425 174091591 CAGCAAAGAGCTGATTGTG 57 174088363 174088381 ATACTCCAAGGAGAGCCAG 58 NA Rattus norvegicus 81 Lrig2 ENSRNOG00000019957 ENSRNOT00000027042 3 1 1 80 2 206937932 206938961 GTATCACAAACACAGAGGAGC 59 206937872 206937890 GCGGTTCAGACAATGTTCC 60 NA Rattus norvegicus 81 Baz2a ENSRNOG00000053881 ENSRNOT00000079383 2 1 1 80 7 2543246 2543438 ACTCAGTAAGCGTCAGCTC 60 2543482 2543500 TCTTGACCCAAGGACACTG 59 NA Rattus norvegicus 81 Gcn1l1 ENSRNOG00000021871 ENSRNOT00000001517 2 1 1 80 12 46774253 46774809 GTTATAGAGACTATCTCCAGCCT 59 46774195 46774213 CAAGCCTTTCACGATGTCC 59 NA Rattus norvegicus 81 Pwp1 ENSRNOG00000005350 ENSRNOT00000007549 2 1 1 80 7 23998357 23998378 ACATACTCCTGTCTGCATATCC 60 23997653 23998317 TGTAATTTCCAGTAGCCGCA 60 NA Rattus norvegicus 81 Cript ENSRNOG00000015215 ENSRNOT00000020534 3 1 1 89 6 10597651 10600314 GAAGAAAGCAAGGTTTGATCCA 60 10600363 10600382 TAATGAGAACCTGGCTGGTG 60 NA Rattus norvegicus 81 Ctnnd2 ENSRNOG00000010649 ENSRNOT00000044871 3 1 1 80 2 84045911 84052428 AAGGAGATAAGCACTCTCCA 58 84052470 84052489 TCCTCAGATCTCGATACTGC 59 NA Rattus norvegicus 81 Bad ENSRNOG00000021147 ENSRNOT00000028712 2 1 1 82 1 222206394 222206953 GTTCCTTCAAGGGACTTCCT 59 222206998 222207016 GATAATGCGCGTCCAACTG 60 NA Rattus norvegicus 81 Minpp1 ENSRNOG00000011287 ENSRNOT00000015017 3 1 1 80 1 251052381 251056659 GTAGATGATGCGAAGGTTCTG 59 251056701 251056719 GCTGTTAATGGCATAGCCA 58 NA Rattus norvegicus 81 Cfc1 ENSRNOG00000042646 ENSRNOT00000066284 2 1 1 87 9 41046175 41046280 CAGAGACACAGAGACTGTGG 60 41046330 41046348 AAAGGGCTGAGAAGATGCA 59 NA Rattus norvegicus 81 Rab17 ENSRNOG00000052979 ENSRNOT00000079446 2 1 1 80 9 98120841 98121819 ATGACATCACTAGGAAGGATTCC 60 98120783 98120801 CCTCTCCTGGATGGAACTC 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 1 2 2 80 8 21518762 21518781 CATTCCTAGTCTGACTCCCT 58 21517638 21518719 TGCAGTTCCAATTGCTGAG 59 NA Rattus norvegicus 81 Dscr3 ENSRNOG00000001681 ENSRNOT00000002284 1 1 1 80 11 34777659 34777677 GACTGTAAACCTCCAGCTC 58 34776151 34777616 ATAATCTGGATCGGCTTCAC 58 NA Rattus norvegicus 81 RGD1563231 ENSRNOG00000047571 ENSRNOT00000074382 2 1 1 60 3 16999687 16999705 GACAGACTCCTGCTATGGG 59 16999404 16999422 GTACAGTGTCACCAGTGGA 59 NA DesignNoJunction Rattus norvegicus 81 RGD1563231 ENSRNOG00000047571 ENSRNOT00000074382 3 1 1 60 3 16999688 16999706 AGACAGACTCCTGCTATGG 58 16999405 16999423 TACAGTGTCACCAGTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Smim17 ENSRNOG00000042502 ENSRNOT00000064949 3 1 1 80 1 71119710 71123090 TGACAGTGATGAGAAAGATCTG 58 71119651 71119669 GACTCCTCATCTTCCTCCA 58 NA Rattus norvegicus 81 Syt15 ENSRNOG00000051688 ENSRNOT00000079030 1 1 1 80 16 10557438 10559063 TTCATCTTTCAGGTATCCAGCA 60 10559102 10559122 CTTCCTCTGCTTGTTTACGTG 60 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000060452,ENSRNOT00000016828 3 2 2 81 9 38550232 38550250 GAGGATGAGTACGAGCCTC 59 38550295 38551705 TAAGATCTTCCGACTGGCA 58 NA Rattus norvegicus 81 Btf3 ENSRNOG00000016912 ENSRNOT00000022864 1 1 1 80 2 28423739 28423760 GAAAGAAACGATCATGAACCAG 58 28421545 28423698 CTACGAGCAGTTCCTTTCC 58 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 80 10 109899138 109899158 TGGATATGGAGAAGAGGAGAG 58 109899200 109899536 GAGTCATGTGATCCACCTC 57 NA Rattus norvegicus 81 Nobox ENSRNOG00000025720 ENSRNOT00000029651 1 1 1 81 4 72753832 72754161 GCATCATGGTGTGGTTTCAG 60 72753770 72753793 GGACCATTATTATCTTCCTTCTCG 59 NA Rattus norvegicus 81 AC118147.2 ENSRNOG00000060693 ENSRNOT00000087411 2 1 1 80 1 88132243 88132261 CTTGCTACGACATCATCCC 58 88132075 88132200 CGTCTACACCTCTATTGCTC 58 NA Rattus norvegicus 81 Tcaf1 ENSRNOG00000017911 ENSRNOT00000024428 3 1 1 80 4 72130400 72136409 ATACCCATCTTAGTTCGTTGTG 58 72130341 72130360 GATATCCAGGTCTGAGATGC 57 NA Rattus norvegicus 81 Pgam1 ENSRNOG00000050585 ENSRNOT00000071965 2 1 1 82 1 261163975 261164764 CATCTGGAGGGTCTGTCAG 59 261164807 261164828 TTCTTGTCCAGTTCATAGACGA 59 NA Rattus norvegicus 81 Lamp5 ENSRNOG00000005457 ENSRNOT00000007274 1 1 1 80 3 129021728 129021746 CATGATCCTGTCTGCAGTG 58 129021787 129030657 ACTGGACATTTATGCTCTTCAC 59 NA Rattus norvegicus 81 Ccl6 ENSRNOG00000030021 ENSRNOT00000045867 2 1 1 80 10 70798226 70798586 GCCAGGCATCATCTTTGTC 59 70798164 70798184 CTTATGCACGTCTGAACTCTC 59 NA Rattus norvegicus 81 Dnajc28 ENSRNOG00000002026 ENSRNOT00000002771 1 1 1 85 11 31771352 31772779 CGGTCTGTGAAGATCACCA 59 31771285 31771303 GTAGTCTCAGGATCCGAGC 59 NA InUTR Rattus norvegicus 81 Aurkc ENSRNOG00000015825 ENSRNOT00000021245 3 1 1 80 1 69962334 69963167 CCAGTCGCACTTACAACAC 59 69962272 69962292 TCCAGAATTAAGTACACCCGA 59 NA Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 3 2 2 80 2 149926952 149935412 CAGTGACTCAACTGCTACAG 58 149935453 149935473 CCTGTAGTCCAGGATATAGCA 58 NA Rattus norvegicus 81 Gorab ENSRNOG00000003861 ENSRNOT00000005148 2 1 1 80 13 81690625 81690644 AACAACGACTGATGGAAGAG 58 81688526 81690583 GGGTCCTCCTAGATCTTTCC 59 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 1 2 2 80 7 2850699 2851368 TACAACGAGATCCTTGAGTGG 60 2851409 2851428 GTCAGGAGTGGAGATCATCC 59 NA Rattus norvegicus 81 Ankrd39 ENSRNOG00000023995 ENSRNOT00000021685 1 1 1 80 9 43123763 43123782 CCGAGTGAAGCATTTCATCC 59 43122960 43123720 CTAGCATAGTGCAGTGCAG 58 NA Rattus norvegicus 81 Ccl3 ENSRNOG00000011205 ENSRNOT00000015139 3 1 1 147 10 70870370 70870936 TCTTCTCAGCGCCATATGG 60 70869992 70870010 CGGTTTCTCTTGGTCAGGA 59 NA Rattus norvegicus 81 AC112531.1 ENSRNOG00000031588 ENSRNOT00000047649 1 1 1 80 2 148800802 148801575 AGCATGCAGAGTCTTTCAG 58 148800740 148800760 ACCCATACAATATTGCTGGTC 58 NA Rattus norvegicus 81 Rbl2 ENSRNOG00000012153 ENSRNOT00000017361 2 1 1 80 19 17315122 17318161 GGACTTGGAAGAAGTGTGAC 59 17315061 17315081 CCGCCTTCTAGTAGTACTGAC 60 NA Rattus norvegicus 81 Tstd1 ENSRNOG00000047123 ENSRNOT00000074035 1 1 1 81 13 89806306 89806814 CACTCAACATCCCTGTGTC 58 89806857 89806877 TTCTCAGCACAGTATGAAGTC 58 NA Rattus norvegicus 81 Atmin ENSRNOG00000011422 ENSRNOT00000015180 3 1 1 60 19 49496117 49496135 TCAGCCAACTTGATACCCT 58 49496159 49496177 AACACGATGACACAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Saraf ENSRNOG00000012329 ENSRNOT00000016792 2 1 1 81 16 61740603 61740622 TACTCACAGCACTCTCAGAG 59 61738286 61740559 TCTGTGGTCCTGTGAAGTC 59 NA Rattus norvegicus 81 Saraf ENSRNOG00000012329 ENSRNOT00000016792 3 1 1 84 16 61740607 61740625 CCGTACTCACAGCACTCTC 60 61738286 61740559 TCTGTGGTCCTGTGAAGTC 59 NA Rattus norvegicus 81 Lmx1a ENSRNOG00000004642 ENSRNOT00000006163 1 1 1 80 13 86050224 86050242 TCTTGACCACTCAGCAGAG 59 86050285 86052387 GAGTCTCCCTCACCTTTCTG 60 NA Rattus norvegicus 81 Gp1ba ENSRNOG00000025959 ENSRNOT00000035445 1 1 1 87 10 57260751 57260960 CTTTCTGCCTGACTGTTCAC 59 57261010 57261028 GAGACATCACAAGTGGGCT 60 NA InUTR Rattus norvegicus 81 Mmgt1 ENSRNOG00000000881 ENSRNOT00000001179 2 1 1 90 X 158972386 158976431 CCAATAGATATAGTTCTCCAGACAC 59 158972320 158972340 CATCCATGTCTTTGAACTCCC 59 NA Rattus norvegicus 81 Nit1 ENSRNOG00000003881 ENSRNOT00000005194 3 1 1 80 13 89724458 89724477 GAGACATTACTCCTGTCCGA 59 89724293 89724415 CCAGATTCCACATTCCCTG 58 NA Rattus norvegicus 81 Cox6c1 ENSRNOG00000032602 ENSRNOT00000043529 2 1 1 60 19 56983331 56983351 GAAACCTCAGATGCATGATCC 59 56983291 56983312 GAATGCACCAACAATATGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 1 1 1 60 3 161297855 161297873 TGTGGTAGATGTGTTTGCC 58 161296548 161297831 CAAGCCATACTCCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Tekt1 ENSRNOG00000014973 ENSRNOT00000066740 3 1 1 80 10 58896704 58904054 ATCTGGCCAAGGTTATGGA 58 58896642 58896660 CTTCTTGCTGAGTGATGGC 59 NA Rattus norvegicus 81 Serpinb3 ENSRNOG00000031134 ENSRNOT00000040021 1 1 1 80 13 27188207 27188228 GAAATACCATACAAAGGCAAGG 58 27187523 27188168 TTCTTCAAGCTTCTTCAGACC 58 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000051653,ENSRNOT00000085857 1 2 2 80 2 25084013 25084031 GTGAGTGCAGTTATGACGG 59 25082038 25083969 TTTCCTCATCGTCCTCGTC 59 NA Rattus norvegicus 81 Ikzf4 ENSRNOG00000005535 ENSRNOT00000019738 3 1 1 83 7 3068269 3068288 CTTCAAATGTCCCTTCTGCA 59 3064422 3068223 GGAGAGGAGACTGAGTGTG 59 NA Rattus norvegicus 81 Slc43a1 ENSRNOG00000008243 ENSRNOT00000011006 2 1 1 80 3 72249614 72249633 CTGTCCTTGAATGGGTTTGC 60 72251844 72251943 GGACCTTAGATGCTTAAACAGAG 59 NA Rattus norvegicus 81 Cacna1h ENSRNOG00000033893 ENSRNOT00000043626 2 1 1 80 10 14748778 14749725 CTCCTCATCATTGTGGGCT 60 14748716 14748736 TTGCTTTGTCTCTGAGAACTG 59 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 1 3 3 80 8 22427974 22427993 TCCTTGACCATCCATCTGAC 59 22428034 22429338 GTTGACTGATAGCGTTTCTCC 59 NA Rattus norvegicus 81 LOC100910882 ENSRNOG00000019848 ENSRNOT00000026964 3 1 1 80 3 151708255 151711054 TTCTCTACAGTAGGAAAGGTTCG 60 151708197 151708216 CACATAGGCGATTCCTTTGG 59 NA Rattus norvegicus 81 Gfap ENSRNOG00000002919 ENSRNOT00000034401 2 1 1 80 10 90992755 90992773 AATCTGTGTCAGAAGGCCA 59 90992185 90992711 ACTCCTTAATGACCTCGCC 59 NA Rattus norvegicus 81 AABR07052585.1 ENSRNOG00000022637 ENSRNOT00000030978 2 1 1 80 3 63820881 63820902 GAAGTGTCATGCCTCATGTC 59 63820820 63820838 GCCATGAGACTGTGGAGAG 60 NA Rattus norvegicus 81 Nuak1 ENSRNOG00000008061 ENSRNOT00000010636 1 1 1 87 7 25039654 25039672 TATGAGCTGCAAGAGACCC 59 25039723 25075302 TTATAGCAACCACTCGGCC 60 NA Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 2 1 1 82 1 65566942 65567606 ACATGTTCATCCACTCTGGG 60 65567651 65567669 TTTGAGCAGATAGTCGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Nlrp9 ENSRNOG00000021913 ENSRNOT00000029591 2 1 1 80 1 71891336 71891356 GAGGAACTCTGTAATGTGCTG 59 71890307 71891297 GAATGAACACAACAAGCTTTCG 59 NA Rattus norvegicus 81 Atp6v1c1 ENSRNOG00000004846 ENSRNOT00000006917 1 1 1 80 7 77703449 77703468 GTTGAACCACAATGACTGGA 59 77703509 77711133 TCTGAAAGAACATTGCTCGAC 59 NA Rattus norvegicus 81 Ucp1 ENSRNOG00000003580 ENSRNOT00000004900 2 1 1 80 19 24460881 24460900 TACACTGGGACCTACAATGC 60 24460942 24461052 ATTAGGAGTCGTCCCTTTCC 59 NA Rattus norvegicus 81 Slc9a2 ENSRNOG00000015567 ENSRNOT00000021270 3 1 1 81 9 47467281 47467300 AGAACCATGAGTGGAACTGG 60 47467344 47468306 AGGACAAAGACACCCAGTG 60 NA Rattus norvegicus 81 RGD1563365 ENSRNOG00000008696 ENSRNOT00000011511 2 1 1 80 7 26473132 26474342 GAAACATCATACAGATGGACGTG 60 26473074 26473095 TCTCTTCTGGATTATCGTCCTC 59 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742,ENSRNOT00000089895 3 2 2 80 7 137310649 137310667 AGCTGACGATCATCATGGG 60 137310707 137316264 CAATTAGATTCATAACCCACGGG 60 NA Rattus norvegicus 81 Htr1a ENSRNOG00000010254 ENSRNOT00000013618 3 1 1 60 2 36247213 36247232 ACCATCTACTCCACTTTCGG 59 36247255 36247273 CGTAGAGAACCAGCATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnck ENSRNOG00000058317 ENSRNOT00000090795 2 1 1 80 X 157151862 157152222 AGTACTCCGCAGGATTAGC 59 157152266 157152284 ATGGCCAAGTAGAGATGGG 59 NA Rattus norvegicus 81 AABR07007703.1 ENSRNOG00000059441 ENSRNOT00000078413 3 1 1 83 2 25007227 25007247 CAGAAAGAAGGAGAAGGTGTC 58 25007292 25011346 TTCAAGGCCCAGTCTATCC 59 NA Rattus norvegicus 81 Itga5 ENSRNOG00000057451 ENSRNOT00000087748 1 1 1 80 7 144977065 144977188 AGTCTCCCTTAACGGTGTC 59 144977003 144977021 TTCTGAGGCTGGTCTTGAG 59 NA Rattus norvegicus 81 AABR07037570.1 ENSRNOG00000024298 ENSRNOT00000030377 3 1 1 60 X 24117788 24120411 GATTTGCAGGAGTGAAGGA 58 24117746 24117767 GATAATAGACTGCAAAGGAAGC 57 NA DesignNoJunction Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327,ENSRNOT00000076818 3 2 2 105 20 46429962 46429980 CTTCAAGGATAAGGGCGAC 58 46505776 46505794 AGTCCCTTCGTTCTGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 1 2 3 81 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 1 2 2 87 20 47253681 47253702 TTCAAGCTGAAGGAATCTACTG 58 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 LOC684270 ENSRNOG00000050348 ENSRNOT00000071971 3 1 1 84 1 72495159 72495253 TTCTCGAAGCCAGATTGAC 58 72495093 72495111 AATGAGTGATTCGCTGGTG 58 NA Rattus norvegicus 81 Fam213a ENSRNOG00000011140 ENSRNOT00000014819 3 1 1 95 16 17504439 17504458 CCAACACAGACATGTTTCTC 57 17504515 17506005 ATGTCCTTGGTTCTTTCTCC 58 NA Rattus norvegicus 81 Rad9a ENSRNOG00000018729 ENSRNOT00000025317 2 1 1 80 1 219449751 219449770 CCTCTTCTTCCAGCAATACC 58 219449327 219449709 GACAGGAAGGACTTCATCAG 58 NA Rattus norvegicus 81 RGD1564285 ENSRNOG00000050249 ENSRNOT00000071008 3 1 1 60 7 20069845 20069864 TCAAATCCTCACAGTTTCCC 58 20069804 20069824 TGGATGTTTCTCAATGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc42 ENSRNOG00000004075 ENSRNOT00000005423 1 1 1 80 10 55176667 55176932 GATGTCATCTTCTGGGAATCTC 58 55176973 55176991 CTTAATGGTGCCAAGCAGG 59 NA Rattus norvegicus 81 Palm3 ENSRNOG00000005729 ENSRNOT00000007535 2 1 1 127 19 25148808 25148826 TACAGCTGTTGCAAAGTGC 59 25149797 25149948 ATCTGTAGGGCCTGTAGGA 59 NA Rattus norvegicus 81 Olr77 ENSRNOG00000045576 ENSRNOT00000049645 3 1 1 60 1 168224830 168224853 CCGTTCTGTTATTATCCAGATGTG 60 168224870 168224890 TGTTATTGATCCGACTGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ric8a ENSRNOG00000013256 ENSRNOT00000018470 3 1 1 86 1 213611626 213611644 ATGGAAGGCATGACAGAGG 60 213611694 213612079 GATGAGTCTGTGCCTGGAG 60 NA Rattus norvegicus 81 Tmod3 ENSRNOG00000032436 ENSRNOT00000013852 3 1 1 84 8 82446591 82446614 GAAACTATATCCCTTGATCCAGAG 58 82445346 82446548 CAAGAATTGCTGCAAGGTC 58 NA Rattus norvegicus 81 Olr78 ENSRNOG00000015760 ENSRNOT00000021098 1 1 1 60 1 168238184 168238203 ACACTTCCAACAATGCTGAC 59 168238226 168238244 AAGCACTCGCCTGTATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpt1c ENSRNOG00000026163 ENSRNOT00000035908 1 1 1 80 1 100964676 100964694 GGCTCTTCAGCTTTCAACG 60 100964539 100964632 TGGACTCTAGGTACTTGCG 59 NA Rattus norvegicus 81 RGD1309540 ENSRNOG00000014798 ENSRNOT00000040633 2 1 1 80 3 80098551 80099104 CACAAGTACAGCTGTCCAC 59 80098489 80098510 AAGGAATCCATAGAAAGTCAGC 58 NA Rattus norvegicus 81 Tspyl5 ENSRNOG00000006278 ENSRNOT00000008227 2 1 1 60 7 72327243 72327262 GTTCTACTTTGGCCGAAACC 60 72327202 72327222 ACACCCATATTCCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl5 ENSRNOG00000006278 ENSRNOT00000008227 3 1 1 60 7 72327243 72327261 TTCTACTTTGGCCGAAACC 58 72327201 72327222 CACACCCATATTCCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbk2 ENSRNOG00000038625 ENSRNOT00000058956 3 1 1 80 1 72425915 72426965 GGCCCAATTTGTAAATGCCT 60 72427007 72427026 CTTCATCACCTCCATCCTCC 60 NA InUTR Rattus norvegicus 81 RGD1562638 ENSRNOG00000022181 ENSRNOT00000039592 2 1 1 89 16 68586563 68588813 GATTTCCCAGTTGGTGTGG 59 68588866 68588884 AGGCATCTTCCTGAAAGGG 59 NA InUTR Rattus norvegicus 81 Mesp1 ENSRNOG00000014951 ENSRNOT00000020117 3 1 1 76 1 141533000 141533018 GGAAAGGCAGGAGATGGAG 60 141532698 141532716 TCCAGGTTTCTAGCAGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Msantd1 ENSRNOG00000010867 ENSRNOT00000014692 3 1 1 94 14 81096845 81096864 TTACCGTATACCCAGTGCTC 59 81095204 81096790 TCCTCTGACCTGAACTTAAGG 59 NA Rattus norvegicus 81 Cst11 ENSRNOG00000004808 ENSRNOT00000006427 2 1 1 80 3 143097862 143098548 GAGAAGCAGATGACGAATCAC 59 143097802 143097821 GTTCTTCTCTGTCTTCAGGC 58 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172,ENSRNOT00000082356 2 2 2 80 8 128585875 128585894 GCACTCAACAGACTCTTCAC 59 128585936 128587753 GTATGGATCTTGCTTGTGCT 58 NA Rattus norvegicus 81 Nipa2 ENSRNOG00000012690 ENSRNOT00000018028 3 1 1 109 1 114352630 114354253 CCTTGTAAGTGCCATTCTGTC 59 114352541 114352565 CATGAATGACCATAACTGTAGATCC 60 NA Rattus norvegicus 81 Slc4a11 ENSRNOG00000021234 ENSRNOT00000028839 2 1 1 80 3 123231499 123231518 GATACCATCCAGGGAGTGAC 59 123230612 123231457 CTTCATGGTACAGACGATGC 59 NA Rattus norvegicus 81 RGD1309139 ENSRNOG00000020307 ENSRNOT00000027504 2 1 1 80 2 211323862 211323881 TCAGGAATCTTACCCGAACC 59 211323921 211328807 AAAGTCGATTTCTTAGAGGCCA 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818,ENSRNOT00000074457 2 2 2 80 8 32312983 32313001 AAGGAGTGGGAAGAAGCAG 59 32311556 32312941 AGCTTGGAAATGCTGAATGAG 59 NA Rattus norvegicus 81 Bag2 ENSRNOG00000012709 ENSRNOT00000016948 3 1 1 85 9 38464713 38465823 GATCAGCGATGGAGAAAGAG 58 38465871 38465889 TTTCCACTGAGACCTCCAC 59 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 2 2 2 81 8 128661864 128662077 TTAAATGCCAGATGGATCACAC 59 128661804 128661822 AATTCCACTCGACCATGGG 60 NA Rattus norvegicus 81 Olr689 ENSRNOG00000058318 ENSRNOT00000078664 3 1 1 60 3 78045131 78045151 ACACCCAAGATGATTGTTGAC 59 78045091 78045111 TGCAACATTCAAAGGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911519 ENSRNOG00000018710 ENSRNOT00000025290 2 1 1 80 1 214420337 214420435 ATGTAGATGCTGACCGTCC 59 214420275 214420296 CCTCCTTCATATTCTTCAGGTG 58 NA Rattus norvegicus 81 Hypm ENSRNOG00000021452 ENSRNOT00000004790 1 1 1 60 X 13989621 13989640 TAGGTTCCACAACTTCTGAC 57 13989663 13989681 AGGATGTAGTCGGTAAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgds ENSRNOG00000015550 ENSRNOT00000020926 1 1 1 80 3 2687207 2687226 TCATCACCTTTAGCAAGGAC 58 2686736 2687166 ACTCTTGAATGCACTTATCCG 59 NA Rattus norvegicus 81 Gstm6 ENSRNOG00000019017 ENSRNOT00000025746 2 1 1 80 2 210737436 210737454 TCCCGACTATGACAGAAGC 59 210737087 210737395 TCAATTAAGTAGGGCAGATTGG 58 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 3 2 2 82 1 70260158 70260179 GCCAAAGAGAATGATACTCCTG 59 70260222 70264200 GTCTTCTTCCCTGCAGAGG 60 NA Rattus norvegicus 81 Tox3 ENSRNOG00000028649 ENSRNOT00000029415 3 1 1 80 19 18162376 18176386 TGCATATGGATCAGAGCCA 59 18176429 18176448 TCATGTGGACAATTGACCTC 58 NA Rattus norvegicus 81 RGD1560010 ENSRNOG00000010071 ENSRNOT00000013356 2 1 1 158 2 178390134 178390152 CCTCTTCATCGTCCCTCAG 59 178391653 178391671 CTGATACTGCAGATGTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Ptrf ENSRNOG00000019778 ENSRNOT00000026783 1 1 1 80 10 88873960 88873979 AAAGAAACTGGAGGTCAACG 59 88863309 88873917 AGCTTGACTTCATCCTGGT 59 NA Rattus norvegicus 81 LOC100365450 ENSRNOG00000047004 ENSRNOT00000074724 2 1 1 122 3 122929239 122929257 GAACAGTCTTCTCAACGGC 59 122929426 122929444 CTGTTGGGAGAAGTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Unc50 ENSRNOG00000018128 ENSRNOT00000024582 1 1 1 80 9 44031336 44031355 CCTGAATGCTTTCTATCCGC 59 44031395 44031491 GTGTCTGTGAGAATAACATGGT 59 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 2 2 2 80 14 7680809 7680827 CCAGCTGTTAAACTTCGCC 60 7680871 7682193 TATGCCTGATATGCTGCGA 59 NA Rattus norvegicus 81 Prps2 ENSRNOG00000004160 ENSRNOT00000005615 3 1 1 80 X 28452948 28452967 ATATGTTGTCAGTTGCTGGG 58 28453008 28454403 GAATATCAAAGAAGCCCTGGA 58 NA Rattus norvegicus 81 Sort1 ENSRNOG00000031814 ENSRNOT00000049127 2 1 1 80 2 211143191 211143211 AATGGTCGAGACTATGTTGTG 58 211143253 211146003 GTAGCCAAAGTCACAGAGG 58 NA Rattus norvegicus 81 Mfsd9 ENSRNOG00000023129 ENSRNOT00000038915 2 1 1 80 9 47507017 47507037 ATCTGACTGAACTGGATGGTG 60 47499448 47506976 AGACTAGACCAGCATTGAGG 59 NA Rattus norvegicus 81 St6galnac5 ENSRNOG00000049676 ENSRNOT00000072899 3 1 1 84 2 258052480 258052498 TGAAGGCCTTCATGATCAC 58 258045946 258052433 GAGATCTTCCTGTCTTTGCC 58 NA Rattus norvegicus 81 Rap1gap ENSRNOG00000013825 ENSRNOT00000046802 3 1 1 80 5 156049646 156055749 TTCACCCTACCCTAAGAACAC 59 156056531 156056549 GAGCATCGTTGTTCATCCA 58 NA Rattus norvegicus 81 Pdcd10 ENSRNOG00000010147 ENSRNOT00000013585 2 1 1 81 2 173977781 173977802 GGGCACTTAAACAGATTCTCAG 59 173971482 173977743 GCTATATCCTTGATTGTCTGCAG 60 NA Rattus norvegicus 81 Sgsm1 ENSRNOG00000000708 ENSRNOT00000000898 2 1 1 80 12 49387432 49393192 GTTCTTCAATGAAATGGCCGA 60 49393234 49393252 ATCTGCACCTTATGCACGA 60 NA Rattus norvegicus 81 Nkx1-1 ENSRNOG00000005113 ENSRNOT00000073177 2 1 1 190 14 82603955 82603973 GTTCAACAGTAGGAGACGC 58 82604127 82606174 TACTTGTAGGCTCAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Slc10a5 ENSRNOG00000032426 ENSRNOT00000045438 2 1 1 60 2 93671077 93671098 GTTGAATAGTTTCTTAGCCCTG 57 93671119 93671137 ATATGCCTTGGACTGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr98 ENSRNOG00000033060 ENSRNOT00000045286 2 1 1 60 1 168520238 168520261 CTATTCTTGCCTTCTATACACCTG 59 168520280 168520298 TTCTTGCCAATGCGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767 3 1 3 91 1 40861618 40899159 TTGATGAGGATGTTGGACAG 58 40899213 40899231 ATCTTCAACAGCTGTGGAG 58 NA Rattus norvegicus 81 Adra2a ENSRNOG00000047545 ENSRNOT00000071541 3 1 1 60 1 274766910 274766928 TGGTATGTCATCTCGTCGT 58 274766952 274766970 CCAGGATCATGATGAGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012616.1 ENSRNOG00000045806 ENSRNOT00000075261 3 1 1 60 2 199562596 199562617 CAGCCAACTTCAACTATGACAG 60 199562557 199562575 GTCACAACACAGAAGAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggt6 ENSRNOG00000015210 ENSRNOT00000045100 2 1 1 61 10 58996669 58996687 GTGCATCCTCATGCAACAG 60 58997008 58997030 GAGGAGCTATTGTAGAAGAGACC 60 NA DesignNoJunction Rattus norvegicus 81 Ung ENSRNOG00000000692 ENSRNOT00000056865 2 1 1 80 12 48253294 48253314 GAAACACCACAAGGTCTATCC 59 48249672 48253252 ACAACCTTCACATCACGGA 59 NA Rattus norvegicus 81 Brd2 ENSRNOG00000000461 ENSRNOT00000080585 2 1 1 81 20 5265171 5265561 ATTTACAACAAGCCCACGG 59 5265606 5265624 GCATCGATGCCACTTTCTG 60 NA InUTR Rattus norvegicus 81 Dscc1 ENSRNOG00000026502 ENSRNOT00000036399 2 1 1 80 7 94768706 94768724 TCAGGCAAGTGAGGAAGAG 59 94767594 94768665 TCAAGAATCCTCCAGTAACCTC 59 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200,ENSRNOT00000085698 2 2 2 80 5 75187501 75187736 ATCCTGTGAAGCCATTTCCT 59 75187440 75187458 CTGCCATATGTGAACGCTG 59 NA Rattus norvegicus 81 LOC685762 ENSRNOG00000031555 ENSRNOT00000049256 2 1 1 60 X 24059557 24061083 AAGATTTGCAGGAGTGAAGGA 60 24061102 24061123 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Med23 ENSRNOG00000013422 ENSRNOT00000032424 2 1 1 80 1 21540458 21542085 TGTGAAGGAGCAGGTAGAG 58 21540396 21540414 CTGATGTGCGTGATGAACC 59 NA Rattus norvegicus 81 Olr950 ENSRNOG00000032325 ENSRNOT00000051053 2 1 1 60 7 7616619 7616639 TTATACCCTAAGGAACCAGCA 58 7616579 7616598 ATACAATCTGCGAAGCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr144 ENSRNOG00000016979 ENSRNOT00000022773 2 1 1 60 1 169247651 169247669 TTCCTCCAATGCTCAATCC 58 169247609 169247627 AGCCTCCTACGAATCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr141 ENSRNOG00000016946 ENSRNOT00000022733 3 1 1 60 1 169214289 169214307 TCTGGCATGGAATCAGGAG 59 169214247 169214266 TATAGATGGCTACAAAGCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrfn4 ENSRNOG00000019356 ENSRNOT00000026169 3 1 1 130 1 219851464 219851482 AAGTGACAGAGGTGACTGC 60 219850876 219851372 TGGTACAATCCGGTAGATGAG 59 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000003251 3 1 2 98 10 76164130 76164694 CATTCAGGAGTTGCAGCTC 59 76164050 76164068 TCTGAACTGTCTACGCTGG 59 NA InUTR Rattus norvegicus 81 Armcx1 ENSRNOG00000037709 ENSRNOT00000029833 2 1 1 60 X 105538786 105538806 TGCTTTCCTATTCTTTCCCAG 58 105538827 105538846 TTGGTGAAGTGATTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000045573 3 1 2 84 10 59923381 59923401 TTGTTTCTCAGCAACTTGTCC 59 59923447 59934372 CTTGGCTCTGCATGTTCTG 59 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000073603 1 1 2 88 10 59923352 59923370 TGGATTCCCATCTCCACAC 59 59923422 59934347 CTTGGGCATTGTGACAGAG 59 NA Rattus norvegicus 81 Gmcl1l ENSRNOG00000030417 ENSRNOT00000048887 2 1 1 60 X 17707664 17707685 TACTATCTAGCAGCAGAAACCT 59 17707625 17707644 GCCACTGGAAACATTCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g3 ENSRNOG00000025121 ENSRNOT00000029848 1 1 1 80 14 83725493 83726510 AGAACTGGGTATGTTCCACG 60 83726553 83726571 TACTGCAAGGGTGAGATGG 59 NA Rattus norvegicus 81 Barx2 ENSRNOG00000008592 ENSRNOT00000011386 3 1 1 81 8 32951606 32958923 GAAGTGGAAGAAGATGGTCC 58 32951544 32951563 GGGAATGGAGTTCTTCTTGG 58 NA Rattus norvegicus 81 Cacng4 ENSRNOG00000003262 ENSRNOT00000004383 1 1 1 111 10 95956077 95956095 ATTCTGCTCCTGCTTGGAG 60 95954687 95956002 TATTACTGAGGCCTGCAGC 60 NA Rattus norvegicus 81 LOC100910559 ENSRNOG00000047090 ENSRNOT00000048564 3 1 1 60 7 13674392 13674413 CATCTTCCATGCCTTATTACAG 57 13674434 13674452 CACATCTCCACAGAAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938 1 1 2 112 8 98752148 98756683 ACATACAGGCGAGAAACCT 59 98756759 98756777 TATAAGGCTTGTCGCTCGT 59 NA Rattus norvegicus 81 Sdpr ENSRNOG00000025895 ENSRNOT00000028907 3 1 1 84 9 55255659 55255677 GTACAGGTGAAGAGGCTGG 60 55245696 55255614 CACTTTCTTCCTGGAAGATGAG 59 NA Rattus norvegicus 81 Tcaim ENSRNOG00000004085 ENSRNOT00000005440 1 1 1 80 8 131860541 131860560 CCTTTACTGGGTTCAAGGAC 58 131860603 131865545 TACCTAACCAGGACGTGAG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616,ENSRNOT00000008785 1 2 2 80 7 97961808 97962759 TTTAGGAGGAAATTCAGAGTGG 58 97961749 97961767 CGAGTCCTTCATGTGAGAC 58 NA Rattus norvegicus 81 Ldoc1 ENSRNOG00000003409 ENSRNOT00000004529 3 1 1 60 X 144807703 144807722 GATGCCTTACATCGAGTCCA 60 144807745 144807763 CTCATTAACAAAGGCCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam47a ENSRNOG00000003836 ENSRNOT00000005141 2 1 1 60 X 45966069 45966088 CTATGACTTCTGTGCATGGG 59 45966109 45966129 CATGAAATGTTCGTCAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adrb1 ENSRNOG00000017002 ENSRNOT00000022813 1 1 1 60 1 277538581 277538599 AACGTGGTGAAAGCTTTCC 59 277538622 277538641 AGTTGAAGAAGACGAAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sar1b ENSRNOG00000004820 ENSRNOT00000006567 2 1 1 82 10 37236865 37242262 CATTTGCAAGCCCGAAGAG 60 37242308 37242326 TCATGGTCTGCACAATCCA 59 NA Rattus norvegicus 81 Isoc2b ENSRNOG00000016829 ENSRNOT00000022620 2 1 1 80 1 72538106 72538124 ACACAGCTCTAGACCTCCT 59 72538164 72539264 GGTTCATCTCACTTTGAGAAGAG 59 NA Rattus norvegicus 81 Olr129 ENSRNOG00000025163 ENSRNOT00000034624 3 1 1 60 1 169031298 169031319 TCTTTCCTCCATTTATGAACCC 58 169031259 169031278 CTCCTCTGAATCTGCTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 1 1 1 89 16 47718477 47718495 CAGGACTACCTGGAGTGTG 59 47718545 47723714 TTCTTGGTATTTGTTGTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Fli1 ENSRNOG00000008904 ENSRNOT00000068037 3 1 1 87 8 33545746 33548017 CCCAGCCAGATCCTTATCAG 60 33543954 33543972 AGAAACTGCCACAGTTGGA 60 NA Rattus norvegicus 81 Uts2r ENSRNOG00000036669 ENSRNOT00000054926 1 1 1 60 10 110364667 110364685 TCTTTAGCCTGGACTTCCT 58 110364709 110364727 CTGCTCATTATGGTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmx ENSRNOG00000003705 ENSRNOT00000005181 1 1 1 80 X 32032926 32032947 GTGGCTGTAAAGATGATCAAGG 60 32032986 32035496 GCTGAGTTTCATCATGGTCTG 59 NA Rattus norvegicus 81 Glra2 ENSRNOG00000003313 ENSRNOT00000004443 2 1 1 80 X 30781890 30781908 TTCCATGATGTCACCACTG 58 30758993 30781851 CAAGGTGAGTCTAATACTGTAGAG 58 NA Rattus norvegicus 81 Glra2 ENSRNOG00000003313 ENSRNOT00000004443 3 1 1 80 X 30663449 30663468 CAGTGAACTTTGTCTCCAGG 59 30614426 30663410 CATCTTCTTCCTTATTCTGCCTC 59 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515,ENSRNOT00000078891,ENSRNOT00000041655 1 3 3 80 8 96112470 96112488 TGGAACGAGTGAAGAAGCT 59 96111984 96112428 TTTCTTCCATAGCCTTGACAG 58 NA Rattus norvegicus 81 Vps13a ENSRNOG00000025539 ENSRNOT00000014800 1 1 1 80 1 235656282 235660625 ATTAGCATCTTACCGATCATCC 58 235656223 235656244 TCTTCAAAGTCGATTCCTTCAC 59 NA Rattus norvegicus 81 Slc25a11 ENSRNOG00000003815 ENSRNOT00000005144 3 1 1 80 10 57266049 57266203 GAATGGGCTGGATGTATTGC 60 57265988 57266007 GCATAGTATGGTGTGAAGCC 59 NA Rattus norvegicus 81 Ocstamp ENSRNOG00000019110 ENSRNOT00000025820 3 1 1 114 3 162075537 162076623 CACAGTCAAATACGATGCCTC 60 162075443 162075461 CAACTCCCACTGGAAGGAG 60 NA Rattus norvegicus 81 LOC100360049 ENSRNOG00000046322 ENSRNOT00000030776 2 1 1 64 8 37349671 37349689 AAAGGACATCTTGCTGCTC 58 37348786 37349643 ATGTCAAAGCTTGCATGGA 58 NA DesignRelaxed Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231,ENSRNOT00000030891 3 2 2 81 12 48279683 48282974 TCCTGAAAGCTCTGTCCTG 59 48279620 48279639 TACATTCTCAGGACGTCCAG 59 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 2 1 1 60 8 36876880 36876901 ACCTTACTCTGCTATTTGAGGG 60 36875966 36876564 CAGGTTTGTTAGCATCACCTG 60 NA DesignNoJunction Rattus norvegicus 81 Tbpl1 ENSRNOG00000011114 ENSRNOT00000014805 2 1 1 81 1 23999928 23999949 TGTAACATGCCCTTTGAAATCC 60 23999987 24000102 GATGAAGTTCAGGTTCATAGCTG 60 NA Rattus norvegicus 81 Exosc7 ENSRNOG00000060337 ENSRNOT00000084725 1 1 1 80 8 132224291 132224313 CTGTCTGATGATCCTTATGACTG 59 132224353 132225494 GCAGCCAATCTTGCATAGG 59 NA Rattus norvegicus 81 Rnf167 ENSRNOG00000003879 ENSRNOT00000005242 1 1 1 80 10 57271196 57271327 GGGAACAGTATTGATAGTTCGT 58 57271367 57271386 TGTTTCAGTTGCTCTTTGGT 58 NA Rattus norvegicus 81 Cox5a ENSRNOG00000018816 ENSRNOT00000025525 3 1 1 82 8 62306297 62307467 TTGCGTAAAGGGATGAATACAC 59 62307510 62307528 CTACATGCCCTCAAAGCAG 59 NA Rattus norvegicus 81 Slc30a5 ENSRNOG00000018746 ENSRNOT00000025506 3 1 1 80 2 30816650 30816669 TTGTAGCAGGGACAATTCAC 58 30816455 30816610 TAAGTATTCCTGTAACCTGCTG 58 NA Rattus norvegicus 81 Rab35 ENSRNOG00000022014 ENSRNOT00000030031 2 1 1 80 12 46708026 46708046 AGTCCTTTGTCAATGTCAAGC 59 46707885 46707986 TATTGCCCACTAATATTCGGC 58 NA Rattus norvegicus 81 Olr380 ENSRNOG00000045761 ENSRNOT00000048193 1 1 1 60 1 230686924 230686945 CTATTCATCTGTTATTGTGCCC 57 230686885 230686905 GAAGACCACCTCATTATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a2 ENSRNOG00000054142 ENSRNOT00000082245 3 1 1 81 5 152562672 152562690 AGTCTCTTCTCCCTCTGGG 60 152562735 152564365 CTCCAAGGATCTCAGCTCG 60 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 85 9 50721069 50722233 CTTTCATCAGCCCAAGAGC 59 50722279 50722300 ACTGACTGTCAAATTCTGACTC 59 NA Rattus norvegicus 81 Zbtb47 ENSRNOG00000019382 ENSRNOT00000043346 2 1 1 80 8 130405493 130405511 CTTCAAGCGCAGTATGTCG 59 130405555 130406452 TCATTGCAGTTCTCACAGC 59 NA Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000086867 3 1 2 80 1 64931951 64964673 ATGTCTGCAATAAGCTGGG 58 64964712 64964735 CTTGATTCATACTTACTCTGTCCC 59 NA Rattus norvegicus 81 LOC684170 ENSRNOG00000048866 ENSRNOT00000067344 1 1 1 60 1 167991777 167991795 GTTTAGCCTGTCTCTGGTG 58 167991735 167991754 CATTGCATGGACTACTTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a36l1 ENSRNOG00000013802 ENSRNOT00000037120 1 1 1 80 8 104966869 104966890 TTTGTGAGAATGATGCTAGCTG 59 104966304 104966830 TGTTCTTACAACTTCGTGTGG 59 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 2 1 1 62 1 72420435 72420453 AAAGCTAGGTTCCGGTTCC 60 72420479 72420954 GTTTGACCTCCTTGTCGTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr49 ENSRNOG00000015444 ENSRNOT00000020699 3 1 1 60 1 168028517 168028535 TAACCGATTCAAGCTGCCA 60 168028475 168028494 GAAGTGGACATAGGAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 1 2 2 80 3 153224177 153224195 CCTGTACGAGATAGTGGCT 58 153222822 153224133 AGATGGTGACAGTCTCTGG 58 NA Rattus norvegicus 81 Sass6 ENSRNOG00000015211 ENSRNOT00000067324 2 1 1 80 2 219637726 219639399 ACAGAAAGGATCTAGTCATCCG 60 219639436 219639458 AGTCTTCCTCGGATATAACAAGG 60 NA Rattus norvegicus 81 Mir26a ENSRNOG00000035582 ENSRNOT00000053705 3 1 1 60 8 127714454 127714475 TGTTCAAGTAATCCAGGATAGG 57 127714494 127714514 TGCAAGTAACCAAGAATAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsm1 ENSRNOG00000015375 ENSRNOT00000020721 3 1 1 81 16 71051108 71052474 GATCAATTTGCTAACCTAGTGC 58 71051048 71051066 TCCCTCGAGGAATATCACC 58 NA Rattus norvegicus 81 Wnt8b ENSRNOG00000013817 ENSRNOT00000018815 1 1 1 124 1 264260532 264261246 GACCAAAGGCTTACCTGGT 60 264261334 264261352 GGACAGCTGTAAGGCTCTC 60 NA Rattus norvegicus 81 LOC100361828 ENSRNOG00000039445 ENSRNOT00000060446 3 1 1 93 8 37025861 37026106 TGCTTTGAAACAGGCTTCC 59 37025786 37025804 CTCTTGTAGTGCACGTCTG 58 NA Rattus norvegicus 81 Cdc14a ENSRNOG00000014515 ENSRNOT00000064735 1 1 1 80 2 219322914 219322935 CCATCCTTAGACCTTCCTTCTC 60 219304732 219322876 ACTGAAGGGAAGGTATAGAACG 59 NA Rattus norvegicus 81 Trmt10b ENSRNOG00000012454 ENSRNOT00000016720 1 1 1 80 5 60863987 60864005 GGAACACATGATCAGGTGC 59 60864047 60864793 GACAGGATATCGAACACTTGG 59 NA Rattus norvegicus 81 RGD1559804 ENSRNOG00000045563 ENSRNOT00000071517 1 1 1 87 16 12193800 12193948 CAGACAAGAGTGAGAATGATTCTG 60 12193736 12193754 AGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Vom1r-ps55 ENSRNOG00000049720 ENSRNOT00000038706 3 1 1 68 1 66749030 66749051 AATCCTAGGCAATTCCTTTCTC 58 66749082 66749100 GTGGGTCTCACCATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Prdm10 ENSRNOG00000007853 ENSRNOT00000010423 1 1 1 80 8 32467133 32469525 CTACATCCATCTCAAGGTTTCTC 59 32469564 32469583 GACAACTCAAACCACAGGTC 59 NA Rattus norvegicus 81 Sfxn4 ENSRNOG00000036572 ENSRNOT00000054674 3 1 1 80 1 282226021 282227193 CTTTCTTGCCCAAATCAGC 58 282225959 282225980 TTATCCATCACCTCAATTCCTC 58 NA Rattus norvegicus 81 Gzma ENSRNOG00000010603 ENSRNOT00000014134 2 1 1 80 2 44973983 44981380 GCTAATTCCTGAAGGTGGC 59 44973921 44973940 AGTAGAACCATGTATGGCCT 58 NA Rattus norvegicus 81 LOC100911186 ENSRNOG00000047565 ENSRNOT00000071574 2 1 1 80 1 141826395 141826416 AAATCACTAGCAATGGAGATGG 59 141826457 141826911 CTTGCTTACAAGACCTGCT 58 NA Rattus norvegicus 81 Klhl25 ENSRNOG00000010959 ENSRNOT00000014553 3 1 1 73 1 137341211 137358982 GGTGGATACACAATGTCAGTC 59 137341158 137341176 GAGATGTTCATGGAGCCTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sacm1l ENSRNOG00000005149 ENSRNOT00000007223 1 1 1 80 8 132640635 132640656 TTTGATTGGATTCTCATCTCCC 58 132640694 132643122 GCCTTCAGAATCAATTCCTCTC 59 NA Rattus norvegicus 81 Inafm1 ENSRNOG00000049661 ENSRNOT00000071098 2 1 1 238 1 78212247 78212265 GTCTGATAGGGCGTGACTC 60 78212027 78212046 GTATACCGCAAGCAACACAG 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Polr1e ENSRNOG00000012664 ENSRNOT00000029704 2 1 1 80 5 60577132 60578235 CTTTGCAGACACTTTGTGG 58 60578278 60578297 CTGCATGTTGAATACTTCCG 57 NA Rattus norvegicus 81 Alg14 ENSRNOG00000011528 ENSRNOT00000015354 3 1 1 85 2 224886696 224886714 CTCCTCCGTGTTCACTACC 60 224886761 224930489 CATTACACAGCACCAAGTCTG 60 NA Rattus norvegicus 81 Mthfs ENSRNOG00000013229 ENSRNOT00000017879 1 1 1 86 8 96569002 96569021 ACTTCCCAAGACATCTTGGA 59 96569070 96611997 ATGAGGTCAAGTCCACCAG 59 NA Rattus norvegicus 81 Ap3m2 ENSRNOG00000018650 ENSRNOT00000025675 3 1 1 80 16 74088053 74088072 CATCCTCTCCTTCATCCCTC 59 74088114 74089444 GGAATGGCAACTAGGTTCTG 59 NA Rattus norvegicus 81 Prrt1 ENSRNOG00000000433 ENSRNOT00000091188 1 1 1 103 20 4395020 4395038 ATCATCGCCATCTTCAAGG 58 4395246 4395264 ATGAAGGAGAAATTCCGGG 57 NA DesignNoJunction Rattus norvegicus 81 Eepd1 ENSRNOG00000006931 ENSRNOT00000009342 1 1 1 98 8 26755384 26757632 GAAAGTGTTCACGGGTCAC 59 26757694 26757712 CAATGTTCGGAAGCGACTC 59 NA Rattus norvegicus 81 Edc3 ENSRNOG00000019579 ENSRNOT00000026492 1 1 1 80 8 62489785 62489805 CAAAGAGTTATGTGGACAGGC 59 62489846 62500594 TAGATGACCAGGAGTTGTGC 60 NA Rattus norvegicus 81 Olr1341 ENSRNOG00000055356 ENSRNOT00000079438 3 1 1 60 8 44043621 44043640 TTGGAACTACTTGGTCTCCT 58 44043663 44043681 TGGTAAAGAGGAGTGACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 1 2 2 80 8 94230381 94232607 CTTGAAGAAGTTATGAAGGTACCTG 60 94230325 94230345 GTCAAACTCTTGAGCCTTGTG 60 NA Rattus norvegicus 81 Olr1327 ENSRNOG00000052227 ENSRNOT00000092067 1 1 1 60 8 43747953 43747973 ATGTCCTATCAAGTCTGTTCC 57 43747994 43748013 CACCAATCAAAGCCATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 1 2 2 80 3 161814962 161816910 TCGCTCCTAATAAGTATGAGTACTG 60 161814906 161814925 TTAGCTCGCTGGACATATCC 60 NA Rattus norvegicus 81 Ppapdc1b ENSRNOG00000015568 ENSRNOT00000020900 2 1 1 87 16 71123904 71123923 CATTCTGACCTGACTTGCAC 59 71123239 71123856 CAAAGGCAAAGGAAGAGTGTC 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 2 2 2 86 8 132173004 132173022 GCTCTCATTTCCTTGCACG 60 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 2 3 4 81 2 53166095 53179745 TGAAATAGTGCAACCTGATCC 58 53166034 53166052 GATATCTCCACGGATCCCA 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876,ENSRNOT00000021081 3 3 4 96 2 53300336 53300354 CATGTTTCCTGGAAGTGGG 59 53185918 53233346 TCCAGAGGAACTTTCCCTC 58 NA Rattus norvegicus 81 Neo1 ENSRNOG00000006490 ENSRNOT00000009496 1 1 1 80 8 63690911 63690931 CTCTCACAGTCAATGGTACAG 58 63689915 63690871 CACGAGATTCATCTAGGTCAC 58 NA Rattus norvegicus 81 Fam221b ENSRNOG00000025453 ENSRNOT00000029035 1 1 1 80 5 59157218 59161702 CCAGACAGGTATCTACATTGG 58 59157158 59157178 AAGCACTTAGACTCATCTCCT 58 NA Rattus norvegicus 81 AABR07070824.1 ENSRNOG00000050216 ENSRNOT00000073726 2 1 1 63 8 85749872 85749893 ACCTATACTTGCTCCATCTGTG 60 85749830 85749848 CTTTCCGTGCCTTTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330,ENSRNOT00000026418 2 2 2 81 16 74328466 74330900 AATAGCGGGCAGGTTAGAG 59 74328403 74328421 GGACTCAGCTTCCTGTACC 60 NA Rattus norvegicus 81 Ppcdc ENSRNOG00000018711 ENSRNOT00000025293 1 1 1 83 8 62109142 62109160 TCCCTGCTCAAGATCACAC 59 62108053 62109096 TGAGAAGAATCTGCCCTGTG 60 NA Rattus norvegicus 81 Ppcdc ENSRNOG00000018711 ENSRNOT00000025293 2 1 1 84 8 62109142 62109161 ATCCCTGCTCAAGATCACAC 60 62108053 62109096 TGAGAAGAATCTGCCCTGTG 60 NA Rattus norvegicus 81 LOC100360884 ENSRNOG00000000376 ENSRNOT00000000423 3 1 1 60 20 26534601 26534622 TACTTCAAGAAAGTACCTCGTC 58 26534643 26534661 CCCAAACTCCCTTCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367195 ENSRNOG00000031912 ENSRNOT00000050963 1 1 1 60 8 132026793 132026811 GCAAAGCACTCTCACAAGG 60 132026751 132026769 TCCTAGCCATGCGAATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurog3 ENSRNOG00000024413 ENSRNOT00000000661 1 1 1 66 20 31761892 31761910 TCCAAGTGTCCCAAGAGAC 59 31761940 31761958 TTGGAACTGAGCACTTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1704 ENSRNOG00000048262 ENSRNOT00000073732 3 1 1 60 20 1012281 1012302 CACAGTTCCTCAGTATGTTGAC 59 1012320 1012341 CTGTCCATATGAAATGTAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910894 ENSRNOG00000050769 ENSRNOT00000072544 1 1 1 60 20 1124373 1124392 CTGGACCTCTCATCACTCTC 59 1124415 1124433 TATGTGCCAGGGAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl39 ENSRNOG00000048073 ENSRNOT00000046536 3 1 1 60 20 18492189 18492208 CAGAATCAAGCGATTCCTGG 59 18492229 18492249 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem217 ENSRNOG00000046758 ENSRNOT00000071399 2 1 1 60 20 8202656 8202674 TGTACGCCCAGATTTACGA 59 8202614 8202636 GTCTCGTATATGATGATCCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1695 ENSRNOG00000000746 ENSRNOT00000000973 3 1 1 60 20 859508 859527 GTCCAACTCTTTGTAGCCTC 58 859467 859487 ATGTCAGTATCAGTGCTAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyrp1 ENSRNOG00000029318 ENSRNOT00000046503 1 1 1 80 5 98399404 98399423 GTCCTCCTGCATACTTTCAC 58 98399462 98403937 CAATGGGAAGGTAGAAATATCGG 59 NA Rattus norvegicus 81 Olr1692 ENSRNOG00000032716 ENSRNOT00000040957 1 1 1 60 20 820512 820533 CTGCTTTAGACCACATACTCTC 58 820473 820492 ACAGGGTTTAAAGTTGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckap2 ENSRNOG00000024650 ENSRNOT00000029266 1 1 1 80 16 74762675 74762693 CAGATACACGATCGCAGGA 59 74762736 74763507 GTCATCTGAGCTTTCCTGTC 58 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 3 2 2 80 3 148354056 148354075 AGGATGAAACTCTGGAGAGG 59 148354114 148357121 TACTCTTTACAGTCTTCTCCCTG 59 NA Rattus norvegicus 81 Agpat5 ENSRNOG00000028623 ENSRNOT00000031291 2 1 1 80 16 75818176 75818194 CACAGTGGTTTACGAAGGG 59 75816785 75818134 TGTTTGCAGAGAAACTCAGTC 59 NA Rattus norvegicus 81 Tmod1 ENSRNOG00000009761 ENSRNOT00000013228 3 1 1 80 5 61688466 61690049 CAACATCCGGAATATTCCCA 58 61690090 61690110 CTGAACTTCTTCACGTAGGAG 58 NA Rattus norvegicus 81 Bmp7 ENSRNOG00000053384 ENSRNOT00000084990 2 1 1 81 3 170929761 170954995 CTTCGTCAACCTAGTGGAG 57 170929698 170929717 CTTGGAAAGATCAAACCGGA 58 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634,ENSRNOT00000046115 1 2 2 80 5 162246458 162246476 ACCTGGACTCTTTGAAGGC 60 162246519 162247056 TGAGTTTGCACCTACTGGAG 60 NA Rattus norvegicus 81 Upf3a ENSRNOG00000017397 ENSRNOT00000066521 3 1 1 80 16 81524625 81524644 TCCATTCCAGAAGATTGCCA 59 81524685 81524821 TTATACTCTGGGTCGTCTTCG 59 NA Rattus norvegicus 81 Tgif2 ENSRNOG00000042374 ENSRNOT00000066341 2 1 1 82 3 152913434 152921917 TGCTGCAGATATGTAACTGG 58 152921962 152921980 ATTAGGGTCTTTGCCATCC 57 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816,ENSRNOT00000033653 1 2 2 80 3 407942 423709 TGCACAAAGAATCGAGTGG 59 407880 407901 CTTTCCTGTGTAAACGAATCTC 58 NA Rattus norvegicus 81 Defb11 ENSRNOG00000038151 ENSRNOT00000058063 1 1 1 80 16 75149579 75156274 CTATGACACTCCAGTTGTTGG 59 75149519 75149539 TAACAGTACCCTCCCTTACTG 58 NA Rattus norvegicus 81 Rem1 ENSRNOG00000007567 ENSRNOT00000010149 2 1 1 80 3 148110992 148115275 GAGAAACTGGATGAAAGCTGG 59 148115317 148115335 ATCTGCGATGGAGTACACG 60 NA Rattus norvegicus 81 Rem1 ENSRNOG00000007567 ENSRNOT00000010149 3 1 1 82 3 148110991 148115274 TGAGAAACTGGATGAAAGCTG 59 148115318 148115336 GATCTGCGATGGAGTACAC 58 NA Rattus norvegicus 81 Cln8 ENSRNOG00000012565 ENSRNOT00000016756 2 1 1 149 16 79831882 79838180 CACCTGAATGCAGGTTGAG 59 79831751 79831769 ATGGTTGCTCACAGGAGTC 60 NA InUTR Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 1 2 2 85 16 66230932 66230950 AGTGTCAATTCGAGAGGGA 58 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Sdc4 ENSRNOG00000014297 ENSRNOT00000019386 1 1 1 80 3 160878068 160879379 CCGGAGATCTAGATGACACG 60 160877344 160877364 GGATGTGGTTATCTAGTGGCA 60 NA Rattus norvegicus 81 Sp5 ENSRNOG00000054086 ENSRNOT00000078819 1 1 1 194 3 56766797 56766815 CTTCAAGCAGTAGCCATGG 59 56767655 56767673 GTCATAGGGCACCTGAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 1 2 3 93 16 75415445 75415463 CTAGATCAGGAGCAGCTGG 59 75414890 75415390 ACTTCACATCTGCATCTTGGA 60 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000035128 2 1 3 81 16 75479376 75479396 GATATGGTCATGGAGGACCAG 60 75478799 75479334 CCTTCACAACTGCATCTTGG 60 NA Rattus norvegicus 81 Ikbkb ENSRNOG00000019073 ENSRNOT00000025851 2 1 1 80 16 74193148 74203665 GCTGAGTGACATAGCATCG 59 74203708 74203727 ACAATGTTCTCTGGCTTCAG 58 NA Rattus norvegicus 81 Sulf2 ENSRNOG00000006052 ENSRNOT00000008478 2 1 1 80 3 162810433 162811283 CTGACTACTCCACGGATTACC 60 162810373 162810394 GGTACATCTTCTTGGATGTTCG 59 NA Rattus norvegicus 81 Ift52 ENSRNOG00000007692 ENSRNOT00000066260 2 1 1 84 3 159393098 159393119 CACTTCTGAGAAGTTAATTGGG 57 159393164 159393386 CAGGACTTCAAACTCTGCA 58 NA Rattus norvegicus 81 RGD1562923 ENSRNOG00000038458 ENSRNOT00000058595 3 1 1 60 16 69280056 69280077 TCGGTATATGTTCTCTAGACCT 58 69280017 69280035 CATGTATGTGGCCAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb51 ENSRNOG00000038130 ENSRNOT00000058034 1 1 1 89 16 75557956 75558546 TACTGCACGCTATCACCAG 60 75558599 75558617 CACAGTTTGGTGTTCCCTG 59 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 2 2 2 82 3 176445751 176445769 GTGGATTTGACCCATTCCC 59 176444801 176445706 TTATGCAGGCAAATATGCCT 58 NA Rattus norvegicus 81 Mk1 ENSRNOG00000019657 ENSRNOT00000026601 3 1 1 60 16 20532203 20532221 GCTACAAGGATTTGCCCTC 59 20532161 20532183 GTAATGCTAACGAAGTTCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Insl3 ENSRNOG00000018757 ENSRNOT00000025347 1 1 1 125 16 20122375 20122393 CTTCCTCACCAGGCTTCTC 60 20122481 20122500 CCCTACAATCCTTCAGTGGG 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Ahcy ENSRNOG00000017777 ENSRNOT00000024310 3 1 1 80 3 150592816 150592836 CTACAAGATGATGGCCAATGG 59 150592363 150592776 TTGTCAAACTTGCTCTTGGTG 60 NA Rattus norvegicus 81 LOC100359747 ENSRNOG00000042156 ENSRNOT00000064894 2 1 1 66 15 32136777 32136795 ATTCCTGTTCTCCTGGCTG 59 32136987 32137005 AGAAAGAACCTGCTCGACC 60 NA DesignNoJunction Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152 2 1 2 124 2 178272437 178274176 TACTGGAAGTAACCTAGCACAC 60 178267468 178267486 ATGGGAAGGGTGTGATCAG 59 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152 3 1 2 141 2 178272437 178274174 CTGGAAGTAACCTAGCACAC 58 178267449 178267467 GATGTAGAGGAGCTCGGAG 59 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 2 3 3 81 5 171600012 171600032 CACTCAGGGATCCTTTAAGTG 58 171600075 171600254 CATCTCGATCCGGTAACAC 58 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 3 3 3 81 5 171600011 171600032 ACACTCAGGGATCCTTTAAGTG 60 171600073 171600253 ATCTCGATCCGGTAACACTG 59 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 3 2 2 80 8 117289176 117289299 AGTTTCCAGTTCGGAACCT 59 117289341 117289361 CATACAGGTCATAGCTAGGCA 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 1 2 2 80 2 143926238 143926721 GTGTTTGATGACACTTTGCTG 59 143926178 143926200 CATTACTACGGTTAAGGTTCCTG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 1 3 3 89 2 216496907 216496925 TATATCGACCAACGTGCCT 59 216489593 216496854 CCAGTGTCTGGTGAATCAG 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 1 2 5 80 X 26443839 26443954 GACTGCATTAGTGCTTACCC 59 26444266 26444285 ATGGGTTCGTAACCATAGGA 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 2 1 5 80 X 26443966 26443985 TACCAGAGCATGATAAGGCA 59 26448509 26450395 TTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351 3 1 2 81 3 109866046 109866065 GCCTCAACAACAGATGTGAG 59 109866106 109866644 TCCTGTTTAACATCTTTGTCGC 60 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000059868 3 1 2 81 8 47339336 47393024 ACTATCACGGACAGGTTTCC 60 47337897 47337920 GTTTCTTATCTGTTGGTGACTCTC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000052129,ENSRNOT00000089371 1 3 6 80 1 76721498 76721516 CCACGACTCATAACCTCCC 60 76555702 76721455 GAGATAGATCACCTTGGCCT 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 2 2 6 80 1 76610661 76614122 TATCCCAAGTCAGGAACGA 58 76610599 76610617 AGATTGGATCCACTTGGGA 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775 1 1 6 86 1 76475230 76475248 GGCTGGCTGTCTATGAGAG 60 76260552 76475186 CTTCTTTATGGATCCCATTGTATCC 60 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086474 3 1 3 116 14 86158921 86158939 CTGGTCAAAGTGGGAGAGG 60 86157806 86158844 TTTCTTGTGCTTCATCATCTCG 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 3 3 3 83 1 178388931 178390108 CTGATTGATTCCTTAGAATGGATGG 60 178390146 178390167 GTATGTATTAGGTCTGTCGCCT 60 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857 1 1 2 93 X 13267517 13267537 CTGTTATGATCTGGTGACCAG 58 13262848 13267462 CATGCCAATCAACTGGGAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023605 1 1 3 80 2 189440263 189448845 TTGATGACTTGGAAGAGCGT 60 189448888 189448906 CATGCAGCGTTAGCTTCAG 60 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375 2 1 2 88 6 22266549 22266567 TACGAAAGAGCTAGACGCC 59 22257351 22266498 ACTGCTCCACTTTCTAGGAG 59 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000079137 1 1 2 80 6 22263073 22266506 GTTTACAACTCCTAGAGAAGCTG 59 22263015 22263037 GGTTAGTGCTCTCATTATAGACG 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000008936 2 1 2 94 4 17439859 17593900 GACTGTCTCATAAAGAACTCTTGG 59 17439788 17439806 CTCATCCAGCAGCATTGTG 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 3 3 3 80 9 94953010 94953028 GAGAAAGAAGAGGCATCGC 59 94953071 94955356 CCTCCTTGATAATGGTGCTG 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000024733 1 1 3 97 9 94964408 94964426 TAGGAGAGCTCACATCCAG 58 94971878 94971931 TTCATCCTGGACACTCTGG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849 2 1 2 104 2 196013916 196015825 AACTACTCCCGTTTCTGTG 57 196015888 196015911 CTACTAACAGTAGTGGATGTAGAG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 3 3 7 80 11 46244233 46248739 TTACATCTGTGCCTTTAGAGAC 58 46244174 46244195 TTTGTAGTTCCTCTTCACTAGG 57 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 1 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316595 22316613 TCGATCTTCAAACTGTGCC 58 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 2 1 1 73 4 145145931 145145949 GTCTACAAGATCTGCGCCT 60 145121717 145121735 TCAGGGAAGATCATGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 3 2 2 74 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882503 100882799 TGTTCAATGGTCTCTTTGGTC 59 NA DesignRelaxed Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675 3 2 3 88 4 156412431 156412449 ATCCTGAGGAGGATCTGCA 60 156411974 156412384 GAATTTCAGGAACTCAGAGTTAGC 60 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000085675,ENSRNOT00000014030 3 2 3 80 4 156426700 156427114 TGAAGATGAGTTGGTGGCA 59 156426638 156426657 TCCATCTTGAAGGTCTGAGG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975 1 1 5 80 17 39188343 39377430 TCACTTCTCTGGAACACTCC 59 39413154 39413175 ATACATGCAGGAATTGATGCAG 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 2 3 3 80 8 109533483 109541515 ATCCCTCTACTTCAGGATGTG 59 109533423 109533442 GTAGCGGGAATGGAATTCAG 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076661 2 1 4 80 1 216382703 216382721 TCACATCACTTGTGATCCC 57 216382764 216394201 CAAATGTTGACTGAGCTGTC 57 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000079844 2 1 2 118 1 171975721 171975740 GCCTGTTCTATAATGAGCCA 58 171974220 171975083 TGTTTCCTCAAACCCTGTG 58 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000079844 3 1 2 118 1 171975720 171975740 GCCTGTTCTATAATGAGCCAG 59 171974220 171975083 TGTTTCCTCAAACCCTGTG 58 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 1 2 2 80 11 58834170 58834188 CCCTCAAATGTGAAGCCTC 59 58833652 58834127 CGTTTGCACTGTTTATCCTG 58 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 3 2 2 80 11 58834241 58844105 AGGTCACTGTGAACTATCCA 58 58834180 58834198 ATTTGAGGGAAGCTTGTCG 58 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000054944 2 1 2 85 10 109883585 109883603 CACCAGAGATGGAGTGGAC 60 109884232 109888575 GAAGAGGTTTGCCTGAAAGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000014962 3 1 10 83 2 231409490 231547666 CATCCTGGTGACCAGTCTG 60 231409425 231409446 CAGATACTCCACAACTTTGTCC 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 3 2 2 80 2 188016258 188016278 GTAGAGCAGACTCAGATTCCA 59 188016451 188016662 ATGGTTGTAACGCCTCCTC 60 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850 2 1 3 82 12 8032859 8032877 CTCAGCTAGCAGGTGTGAG 60 8032922 8085548 TGAGCAAATCTGTGGAGGAG 60 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 1 2 2 80 1 174370116 174372220 CTGTCACAATCAAGGTTACCA 58 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 3 2 2 80 17 39547509 39548794 AATTCTCAGCATGATTGGAGAG 59 39548835 39548853 TCATTGCTTGACTGCAAGG 59 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 1 2 2 82 13 98525066 98525085 CTCTGATCATGATCAGCGTC 58 98522388 98525023 ATGGATGAACTTGTAACAGCG 59 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000077185 2 1 2 175 10 39459276 39461608 TATGAGTGATGTTGAAGCTGG 58 39462056 39463631 TATTGGAGACCCACTTGCA 59 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102 1 1 2 109 4 114880009 114880029 TGCTTCAAAGATCCTCAAGAG 58 114883395 114884659 GTCGAGTTGTGGTCTTTCG 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 1 2 2 80 1 144176520 144176538 CGGCGTTAGACTATCACAG 58 144176582 144177622 ATGCAAGAGCTATTCGCAG 58 NA Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 1 1 1 79 6 24080567 24080585 TCTCTACTCGGTTCACAGG 58 24082907 24082926 TTGAACTTCACTGTACTGCA 57 NA DesignNoJunction Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599 2 1 2 80 13 80698456 80699827 AAGTTTGCTGAAGCATCTGAG 59 80698396 80698416 ACATGACATTTCCTTGCAGAC 59 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481 1 1 2 83 14 104489460 104492915 TTAGGTTTGCGGATGACAC 58 104492961 104492980 CGTCTAGCTCTATAGTCCGT 58 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000064668 2 1 2 119 6 91557931 91557955 GTGGACTAAGTGCAGATAATATTCC 60 91560444 91561817 CTTATGACCTGAACATTCTGGG 59 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327 3 1 2 80 16 54848534 54848554 CAACATCATGTTTACTCCTGC 58 54848594 54850121 TCCATTCTCATTGAGTTCTCG 58 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000086899 1 1 2 80 16 54792716 54792734 TTGTATCTGACGGCCACTC 60 54792776 54794507 CTGACTGTGAAGTATCCAGGT 59 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672 3 1 2 81 4 71664399 71664419 ACAATGCTAACTGTCCAAGTC 59 71664460 71667542 CCTCTATCTGTCTCATCTCCA 58 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022543 1 1 2 80 4 71664398 71664419 GACAATGCTAACTGTCCAAGTC 60 71664460 71664562 GGATCCAATAGCACCTCCA 59 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000079498 1 1 2 83 1 73660394 73660889 CAAAGGAAGGGCTGAATCTG 59 73660163 73660181 ATCCTGGCTGAACACTGAG 59 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 1 1 1 120 18 32595181 32595199 GATGCTTGTGACTCTGCAG 59 32605434 32605452 AGCTGGGATTCAAAGGGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 3 3 3 81 1 140853798 140853817 ATAAGGCTGTACCCTGTCTC 59 140848634 140853754 CAGAGCATCCATGCAACTC 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 1 2 2 83 4 7383683 7383701 AGGTGTTGGACATGTACCC 59 7383746 7384019 TCATGTTGGTATCTCGAAGGT 59 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000090042 1 1 2 91 1 177651602 177651621 AGACAAGGACTAGGAAGCAG 59 177654066 177654174 ACTAGACACCTTAATGGCGG 60 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228 3 1 3 81 9 10359439 10363408 AAGAACTGTCAGGGAGATCTG 59 10359302 10359321 GGGCAATAGTTTCCATCCTC 58 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161 3 1 2 172 8 96026393 96026414 TGTCACTCATAACCCTTCTCAG 60 96023448 96023474 ACTTATACTTTCAAAGGGTGCC 59 NA Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 2 2 2 60 20 1889944 1889965 AACTCTTCATCTTCATGTCCCT 59 1889985 1890004 AAGGCCATCACTGTTAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 3 2 2 60 20 1889944 1889964 AACTCTTCATCTTCATGTCCC 58 1889986 1890004 AAGGCCATCACTGTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492 2 1 2 102 5 115343835 115343853 AAGATTTGGGTTACCGAGG 57 115328046 115334701 TTATTCTTTCCTGCTGGCA 57 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000082254 3 1 6 87 1 282672599 282681972 TTCTTCAGCACTGGAGATGAG 60 282682021 282682039 CGATATTCTGCTGGACCCA 59 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072 2 1 2 81 1 192034365 192036720 GACTACCACATGATGGCGT 60 192036763 192036783 CCACATATTGAGTTGGAACCC 59 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 3 1 2 236 5 116963695 116963713 CCAAGGAAAGAAATGGTGC 57 116965068 116965089 GTAGACTTTACTAGCCATCGAC 58 NA DesignNoJunction Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000052315 1 1 3 113 1 220855932 220855950 GATCTCCACAGTGAAGGAC 57 220856026 220857631 ACACTCATCTATGTCCACAC 57 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000051910 2 1 2 124 2 61409224 61413943 GAGAAGCCGTTGAATCCCT 60 61409118 61409137 ACTTTAATCGGCTTGCTGTC 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 1 2 3 80 10 56717027 56717045 CTGAGGCTGACCAGTACTG 60 56717087 56722805 TTACAACGAATTCCTGCTCCT 60 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056250 3 1 3 94 9 121862890 121873382 GTATCCAGGTATGGTAAACCG 58 121873438 121873456 GTTCATGGAGGGATTCTGG 58 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000076359 1 1 3 88 X 62693560 62698786 AAACAAGCGATGTGTCAGG 59 62693490 62693508 TAAAGCTTCTTGGCGTCCT 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000083651 1 1 5 88 16 19728845 19728864 TAGACTTCTCCTTTGAGCGC 60 19728915 19730705 ATGCAAATCGTTCCTGCTC 59 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 3 2 2 80 18 29502891 29503075 GAGCTAAGTGCTTTGCAGTC 60 29502830 29502849 CAATACTGCTCTTCCCTGGT 60 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 3 2 2 81 3 5720480 5720774 CACTTTCAGGAGATCAGAATGC 60 5721198 5721217 TGTTGTATGTGCACGAAGTG 59 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 3 2 3 80 20 2089438 2092245 TGTATCAACTGCAAGTTTCAGG 59 2092286 2092304 AAGAGGAGGAAAGGACTGC 59 NA InUTR Rattus norvegicus 81 Tsacc ENSRNOG00000037552 ENSRNOT00000056898 1 1 1 106 2 187662021 187667210 AGGAAGAAGCCAAAGAGGA 58 187661933 187661951 GTTCGAGAAAGTAGCTGGC 59 NA Rattus norvegicus 81 Tsacc ENSRNOG00000037552 ENSRNOT00000056898 3 1 1 108 2 187662021 187667210 AGGAAGAAGCCAAAGAGGA 58 187661931 187661950 GTGTTCGAGAAAGTAGCTGG 59 NA Rattus norvegicus 81 Pabpc4 ENSRNOG00000015642 ENSRNOT00000056592 3 1 1 80 5 140983299 140983320 ACAAGTCTATAGACAACAAGGC 58 140983360 140985327 CATCACAGACCACCTTACAG 58 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745 1 1 2 80 17 43332384 43338395 AGCCAACAAATGTCTCAAGG 59 43338438 43338456 CATCTTTGCCCAAGTTCCG 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019309 3 1 3 80 1 193251604 193255715 GTGAAGAAGGAGAGTCCTCC 59 193251543 193251563 TATCTGGTTGCTGTTTCTTCC 58 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 2 2 2 80 4 114973929 114976273 AACATGTCTGTGTACACCC 57 114976317 114976335 CCCATAGCTCAGACATTCC 57 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725 3 1 2 81 8 111714346 111715025 TGAGAAAGATCCAGTGGCC 59 111714283 111714301 GCCAAAGAACGGTTGAGTC 60 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570 2 1 2 80 18 51492345 51560426 TTTCTCAGCTCAGAGGCTG 59 51560470 51560488 TGAGGTAGGAGATTGGGCT 60 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000083976 2 1 2 82 12 13524286 13524304 ATTCCAATGCTGGTTACCC 58 13524348 13526701 TCAGAATCATCTTCTGTCAGG 57 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458 1 1 2 80 12 13524347 13526530 TCCTGACAGAAACACATAAACC 59 13526570 13526589 ATCTGTTCAGATCTTGCCAC 58 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 3 2 2 80 15 41121548 41121569 GTCACCTTATATGCAGAACAGC 60 41121608 41123146 AGATTCATGAACAACAGCCAG 59 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144 1 1 2 81 2 118932323 118932343 ATAGCAACCGAGGATCTGG 59 118932388 118932406 TCATATGCCTCCGAGACAG 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000080655 2 1 2 82 17 45255680 45255698 AGTAGCCAGATGGAGTCCA 60 45255741 45256026 TGGGTGACTACTCTAACTTCTG 59 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 3 2 2 80 4 138701647 138745880 ATGTGGTTGTGAAAGACCC 58 138745923 138745942 GAAGAACAATGCTTTCTCCC 57 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788 3 1 2 85 4 138269325 138441408 GCCTTGCAGATGACTACAC 59 138441455 138441475 TTTCTCCTCAGAATCCAAAGG 58 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 1 2 2 80 5 139067753 139067771 CATGAAGTCGAAAGCCCAC 59 139067815 139071097 TCACTGGTTCCTTCTTCGG 59 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408 1 1 2 80 17 45510436 45510456 ATGGACTGCTACAAAGATGTG 58 45510499 45510519 CTTGAATGGAATGCGTTCCT 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 1 2 2 80 8 48725104 48725123 AGTTCAGGCATTGAGATGCT 60 48724446 48725062 GACCACAAACTTGATCCCTG 59 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000081677 3 1 2 81 9 55390759 55390780 CAGAACACTACAACGGTTTCTG 60 55389607 55390718 GCATCACATCTGCAAGATGG 60 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 1 2 2 80 7 116421169 116422136 GTGTGCAGAAAGAGCTCAG 59 116421107 116421125 GTAGCAGTTGATGAGCAGG 58 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597 2 1 2 94 14 79938505 79938523 TATGACGACGTCCCTTGTG 60 79933545 79935750 TTGTTCTTCAACTCTTCCACTG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 2 2 4 82 X 54235604 54235622 AATCCGTTACTCCACCTGG 59 54229835 54235560 ATGGGATACCACTTTCAGGAG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 1 3 4 80 3 62902414 62902432 TCGGATGGTTCTCTACCAC 59 62886677 62902370 AACCCAGCAGTAGTTAGCA 59 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 1 2 2 83 9 5324424 5329139 TTACCATGACAGCCACCTG 60 5324359 5324377 AAGCTAGACCACAACCTGG 59 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786 1 1 4 80 5 115167945 115167963 GCTCTTAGCTGGCTACCTC 60 115167881 115167902 AACAAGTTCCCAAATGGCAG 59 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493 2 1 2 83 3 142781441 142781707 AATCAGTACAGCCCAACAC 58 142781376 142781394 ACTCTGAAGGTAGTGGCAG 59 NA Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 1 2 2 80 15 55419851 55421740 AAAGAATGAAAGTTGGGAGTGG 59 55419792 55419810 TTTAGACAACGGAGAGCCC 59 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 2 2 2 86 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494481 42494499 CTTCGTACATGTGAGGGCT 60 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000084702 3 1 2 149 17 48444481 48455582 TAAGGTCCTCCAGAAGCTG 58 48394098 48399200 TCCTGCATACCTTTGATTGC 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 1 2 2 80 12 13902577 13903161 AAATTCAATGTGCTGAGCCA 59 13903200 13903222 CTGTATCTTTGCTAGTCTTCCTG 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000038203 3 1 2 95 12 13904536 13904554 TCCTCCTCATCTTCCTCCT 59 13904613 13905380 GGAAGAGTCCTCGTCTGTG 60 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312 3 1 2 83 3 111444238 111450081 GAATTCCACTGCAGGAAAGC 60 111450127 111450145 AGGGTAACTCTGCTCACAC 59 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 3 2 2 90 9 67781907 67781925 TACAGATCCAGTGTGCACG 60 67781978 67784176 AGGTCATACCTGCAAGTCTG 60 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 1 2 2 80 1 214412030 214412048 TCGGCTTCAGTCACTTGAG 60 214411876 214411987 TGTCTCCAGATCTTCCTTGC 60 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937 2 1 2 99 6 27476733 27476752 GGCTCACATCCATTATGGAG 58 27475090 27475113 CAGTCCTAGATCTGAGTTTGG 58 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 3 2 2 80 12 6949104 6949123 AAGCTGTTCGAAACCTACCA 60 6944181 6949064 TTTACAATCTTCACCTGTGACG 59 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013514 1 1 2 80 4 175851528 175855537 ATGCACCTAGACAGTGTCC 59 175855579 175855599 TCCATTCACAATGAAGCTGAG 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000080537 1 1 2 80 15 46059099 46059120 AGTTCGTGTTTGGTTAAAGAGG 59 46059160 46072873 ATGCATGAACATGGAGAAGG 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 1 1 5 83 1 80543677 80543695 TTCCAGTGACATCCCTTCG 59 80534709 80534949 TCTCTAGTGTAGAAGACTCCCA 59 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000039953 3 1 2 81 4 10460324 10467712 CCTCCATAAAGGCTACTTTGTG 59 10460264 10460282 GATCAAGTCTGGATGCCGA 60 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574 1 1 2 228 13 99175022 99175041 GGAAGGTCTTCGATGTGAC 58 99177462 99177480 TCACAATTGCCTTGAGCTC 59 NA DesignRelaxed Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574 2 1 2 229 13 99175022 99175041 GGAAGGTCTTCGATGTGAC 58 99177463 99177481 GTCACAATTGCCTTGAGCT 59 NA DesignRelaxed Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574 3 1 2 229 13 99175021 99175041 TGGAAGGTCTTCGATGTGAC 60 99177462 99177480 TCACAATTGCCTTGAGCTC 59 NA DesignRelaxed Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 2 2 2 87 9 71265560 71265578 GAAGAAGAGACTTCAGCCC 58 71265627 71269648 TAATGGCAATATACTGCCCAC 58 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 2 2 2 80 7 75416456 75418652 CGTAAAGTGTTTGTTGGTCG 58 75416395 75416413 ATTGGTGAACTCCTTTGCC 58 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 1 1 1 68 14 87701354 87701372 GAGCACTTAACCGAGAGTG 58 87701052 87701070 TCCTGAAGAGACTGCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000047823 3 1 2 80 X 77535922 77537482 CTGGTTACATATCTCAGGTTGTG 59 77535864 77535885 GCATGTGATAGTCAAGTGTCTG 60 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 2 3 3 80 2 236649902 236651304 CCTACATCAAGATGATTCTGGA 58 236651345 236651363 CGTTCCAGTAAATCCGGTC 58 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301 2 2 3 86 2 236621921 236621939 ATGTCAGCCGGAATAAGAG 57 236621989 236624586 CTCCAGACAATCCTGTCAG 57 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 1 3 4 80 3 111718744 111720126 GCATCTAGGAATGAAGGTGG 58 111720163 111720187 GTACTCATCTAGCTTATCACTACAG 58 NA Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 1 2 2 80 2 188452443 188452462 AAGGAGATGATCAAAGCAGG 58 188452503 188452664 GATGGATTCTGCATGGTACTC 59 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476 3 1 2 85 18 41355436 41355454 AATGATCTGCTCAAGGCAC 58 41334743 41355388 CGAATCACTCCCTTCTTGTC 58 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001333 3 1 2 103 12 2239660 2240888 CAATCCAGAACGCTCTTCAG 59 2239385 2239403 TTCGTTCAGGTTCTGGGAG 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355 2 1 4 89 4 152482023 152482041 GTTCAAGTGTCCCAACCAG 59 152481259 152481971 TCCCTGTGTACTACTCTCCA 59 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004921 1 1 2 99 X 104775214 104775232 AACACCTTCCTTGGAGAGG 59 104765628 104775152 CCACTACTGATCCCTTTCCA 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 3 2 2 80 6 36980007 36984561 CCAACAATTTAGAAGGTGTCTG 58 36984602 36984620 TTTCCACAATAAGCACGCT 58 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000082239 2 1 2 96 5 101563363 101563381 CTCACAGGAGGAACATGCT 59 101562301 101563304 GTTGTTTGGTGCTCAGTCTC 60 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 1 3 3 80 18 31077933 31077953 TTTCAATATCCCTCTCCTGGT 58 31077776 31077893 GATGTTTCATATGTCCAGCAC 58 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254 2 1 2 80 1 214602451 214602469 TGGTAACAAGACCTCCACG 59 214602509 214603723 AGGTTCAGATTAGTCTGAAGGTC 60 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000085125 1 1 2 80 1 214602697 214603736 TCTTTGTTTGCTTACTAAGCCC 59 214603774 214603795 ATACACTCAATGTTGACCACCT 60 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349 3 1 2 141 7 134495689 134495707 CAGTGTCCTTGGAGGAAGG 60 134486856 134495584 GAGACCTCCTTACACCTGC 60 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 3 2 4 80 13 76289671 76295384 CTTCTTGACTGGGATGGTG 58 76295428 76295446 TACATCACAGACCGAACCT 58 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629 3 1 2 81 20 8304486 8304504 AGTAAGATGGTGGAACGCC 60 8304548 8309448 ACAGTCTCTTTGCTCTTCGT 59 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000086232 3 1 2 97 8 114940076 114940095 AGAAGCGGAAATCTCTGCT 59 114939995 114940013 CTGTTGCTGTGAAGTGGAC 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000073253 2 2 5 94 5 101935784 102010610 TTACAATCAATGGGCTCCAG 58 102010667 102010685 TGCAATGGAAGAAAGTCCC 58 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 2 2 3 80 X 65279580 65279600 AAGTTTGGTTCTTTGGTCTGC 60 65279639 65280650 GTGCAGTCACCTTCTTATTGAG 59 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181 3 1 3 80 X 65293271 65293768 AGAAGCATCTTAAGGCCCT 58 65293808 65293830 CATGGATCATGTCATTGGTAGTC 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 1 4 4 80 10 1392273 1392292 TGTTCTCCATGTGACCTTCC 60 1385538 1392232 ATCTGAATGTTACCAAAGGCG 59 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324 2 1 3 80 17 59697973 59714650 TGTTCACAGTCAAATTTGCC 58 59714693 59714711 TCGAGTCTTCCTTGTTTCC 57 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 2 2 2 80 9 49859663 49859685 GCCTTAAGAAATACCCTAAAGCC 60 49858874 49859627 GGTACTCTTCTTTCTGCAATCTC 59 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 1 2 2 80 3 46513066 46513729 GCTGGAGATCAAATTCACTGG 59 46513006 46513027 ATCCATTCTTCCTTTCCTTCCT 59 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 2 2 2 80 3 46513064 46513727 TGGAGATCAAATTCACTGGAG 58 46513004 46513026 CTATCCATTCTTCCTTTCCTTCC 59 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 3 2 4 100 3 112229218 112250999 GAGACCTCCGGAAATTTGTG 59 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152 3 1 2 81 11 66799438 66799457 GTCTCCACGAAGATGAACTC 58 66797946 66799395 TGCATCACCCTCAATTTCTG 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 3 3 4 82 10 67609239 67609257 TGTCTGGAGTATCTGGGCT 60 67609301 67611171 TCTCTTGTTACTGTGATGGCT 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000088988 2 1 3 115 18 56435911 56438188 CTTGTACGTCAAAGCCCAC 59 56438267 56438285 CAACTTCTGAGTGAGTGGC 59 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310 2 1 2 81 6 48809749 48857855 TTCTCATCGAAGCCTTTCC 58 48857899 48857918 GTCTTCCTTGTCTTCTTTGC 57 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000084632 3 3 5 86 X 63806025 63806048 GAGATATCATCCGAGAATACACTG 59 63805813 63805983 GCTGGATTCCAAATTTCTTCTC 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000084632 1 2 5 112 X 63807673 63807693 GTATCTCTGAAACTGACGGTG 59 63807030 63807601 GTTATTAATCTTGCGGGTCCT 58 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000080364 3 1 2 82 12 18119744 18120180 TGTAGGCACTGGATTGGTG 60 18119680 18119698 TCTGAACAGCATCCAGCTC 60 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 2 2 4 81 7 143124234 143124988 CTGAAGAAGGATGTGGACTG 58 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009073 2 1 3 125 3 92736842 92736860 CACCATTGAGAAGAGCACC 59 92712420 92736753 GAGTCTCCATCACTGGTGG 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000008760 2 1 3 82 3 92708103 92721564 CAGAAAGCAAGGGACACTC 59 92708039 92708057 TGGAATCTGAGGTCTCCTC 58 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073 1 1 2 80 14 81380641 81383174 TCGAAGACTAAGTGGACTAAAGAG 60 81380584 81380605 AGTGTTCAATGGAACAAACAGG 60 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018340 1 1 2 80 14 81382552 81383178 CAAGTCGAAGACTAAGCCTC 58 81380633 81380652 TGTCCATCCTCTTTAGTCCA 58 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 2 2 2 80 2 149547643 149547662 AGACGTCTTTCTTCCTTGTG 58 149545983 149547603 ATTTCAAGTCCTGATGAGACTC 58 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000038798 1 1 2 89 1 102115703 102115721 CCTAGAGTACACCGACTCC 58 102114502 102115650 AGGTAGTTGGAGACCATGC 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 3 3 3 80 20 20582930 20583919 CATCCAAATATAGTCAGCCTGC 59 20583960 20583978 ATCCATGGACAGGAACTCG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183 2 1 2 81 17 63838774 63860386 GTTACCAGGAGATGAGATTAGCA 60 63838715 63838733 GGAGACGATGAACCTCAGG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057986 2 1 5 80 1 79685410 79685430 TTCTACACCCTACGAACTCTG 59 79681618 79685369 TGTTACAGGCTTGTTCACCT 60 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 2 1 1 86 10 11913368 11913386 CAGAAGACCCTCAGCAGAG 60 11916808 11916827 CTTCTGACTGGTCTCAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 3 2 2 65 1 81376270 81376289 AGATGATGAAGACCTTTCCC 57 81381493 81381511 TCCTCTTCCTCTTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 2 2 2 83 12 19434587 19434606 TTTAGTGGGTCACTCGAGTG 60 19433821 19434541 TGGTCAGTCACATTCCCAG 59 NA Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 1 2 2 80 6 10961896 10961915 AATGCTTCAGCCATTTACGA 58 10961957 10962525 TTCTAGGCACTCAGAAAGCA 59 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739,ENSRNOT00000083655 1 2 3 88 X 75291832 75291850 CTCTAGTCTCCATCTGCGG 59 75224257 75291780 TTCTGTAGTCTGGGACAGC 59 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240 1 1 3 80 7 107479350 107479368 AGGTTCCCTGAAGTGTCTG 59 107479410 107480096 TAACAACTCCAGTCCTGTCTC 59 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 2 2 2 80 15 10463900 10463919 TTGGGTTATGGACTCTCAGG 59 10463961 10464984 AGCCATGCATCTTAAAGCAC 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867 1 1 2 80 11 65076142 65076161 CCATCCTTATCCCTCCTCAC 59 65066381 65076101 CATTAGTATCTGAGGCTGCTG 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891 3 1 2 80 3 163972327 163972349 CTTCCTTACCAGGATGAAGG 57 163969797 163969815 AGGAGGACAGTGACATACC 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 2 7 7 80 15 5507396 5507416 AGATGACCAACTGGATAAGTG 58 5506895 5507354 AGTTTCTGATGCGGTAGGA 58 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989 1 1 3 80 11 71027571 71029096 GCAGAAGCTAGTAAAGGTCG 59 71027510 71027529 CTGTCTTGCTATGGAGTCTG 58 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951,ENSRNOT00000066474 1 2 3 80 10 75090430 75090448 CTCCTTCCTCACTGGACTC 59 75090491 75091368 TCATTGGGTGGGATCTTGAG 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000066495 1 1 2 89 2 116065637 116065657 CATTTCAGACTCTTCCTCCTC 58 116065708 116070163 CCTGATAAACCACTGGTGG 58 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000077797 3 1 3 82 3 8648374 8648468 ACTGGCCAGTGAAGTACTG 59 8648514 8648532 ATTTCTCAGCCACCAGTCC 60 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441 1 1 2 90 X 112284401 112290823 ACCTCTCAGATCTACTACTCTG 58 112290872 112290892 CATTACCAGGATTAGTAGCCC 58 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402,ENSRNOT00000083774 2 3 4 80 3 2970215 2970748 CCAGGATGATTTCTCTGGGA 59 3000481 3000502 TTCATGAATCTCTTCCCATCTG 58 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 1 2 2 84 3 112371000 112371021 CCTACCACCTCTGATAATAGGA 58 112370312 112370957 TTCATCAGGTAGAACAGTCAG 57 NA Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 1 2 2 80 11 61670005 61672016 TAATTACAGCTCAGCTCTATCC 57 61672057 61672075 ATGAGGAAGATGTAGGCCA 58 NA Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 2 2 2 80 11 61670006 61672017 AATTACAGCTCAGCTCTATCCT 59 61672057 61672076 GATGAGGAAGATGTAGGCCA 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 2 3 4 80 4 85594279 85594297 CTGTGTTCCTGAAGGATGC 59 85594340 85595684 AGACCTTGCACAGAATAGTG 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616 1 1 2 81 13 113921395 113921416 GTTCTGTGCATATAAACACTGG 58 113920991 113921355 TCACCAATGAGTCGATATCCT 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643 1 1 2 80 17 53666210 53673637 CACGATCTGGAGATGAAACC 59 53666149 53666169 CTTCCTCATCTTCTTCCTCCT 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000022445 2 1 2 80 17 53697904 53697924 GATGGAGATGAGAAGACACTG 58 53694273 53697864 GTCTAGTGTTTCACTTTCAGC 57 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000064332 2 1 2 80 1 78715279 78715618 TTTGCTACCTCGTATGAGCT 59 78715799 78715817 CATGGTTGCATTGCTCCTC 60 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771 3 2 3 108 1 150492433 150502999 TCTAGACAAGCAGGTGACAC 60 150503070 150503088 TAGCAGGGAAATGTTGGGT 59 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 3 2 2 80 X 65626843 65626864 CGACCATATTCTATACATGCCC 59 65626904 65644607 AAGTACTTCACCAGGCTCAG 60 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000018936 2 1 2 80 17 27452107 27452125 CAGTCTGGATAGGATGGCC 59 27449383 27452065 TGCACTTCTTTGTCTTCACTG 59 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 2 2 2 80 19 52080995 52081863 AGTTATCATTGGCAATGGTCC 59 52081905 52081923 GCTCCTGGTTTCACATAGG 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000067610 2 1 6 91 5 48012081 48012234 TGCAAGAAGAGGATGGAGG 59 48012287 48012307 CCAGAAGTCGTCCTCTAAGAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 2 5 8 83 20 1963408 1966088 AAGTGGATTGGAGGGTCTC 59 1963343 1963366 GGAGATAAAGAGTTTCTGAGACAG 59 NA Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 3 2 2 80 1 47679909 47683045 GTCACAGAATCAGACAATCCTC 59 47684199 47684217 ATGCTTGAAAGCAAACGGG 60 NA Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458 3 1 2 89 1 47629325 47629344 GTACTTTGTGCTGGTTACCG 59 47629396 47630046 TTGATCCATTCACCTCCGG 60 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000086504 1 1 2 91 7 143382701 143382722 AAAGCCTCCAGACAGACAG 59 143382628 143382646 CTGACTTGGGAAGGGACAG 60 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646 2 3 5 92 4 140268538 140272582 CTTGGGCTTGGTTGATGAC 59 140272636 140362486 AGCTTAAAGAGGCAGTCTCTG 60 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000073669 2 1 2 85 13 48649368 48649674 TCAATGAGGCCATGAGAGTC 60 48649722 48649740 GTAGTTCCCTTGGGTGGAC 60 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 1 2 2 122 19 52181091 52184938 GAAGTTTGCTGAATCCGACC 60 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 1 3 3 80 18 59994486 59995703 TTGTCAGATGACTTGTGTCAG 58 59994426 59994444 GTTCAGTGTCCCGTATACC 57 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 1 2 3 82 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 3 1 1 60 11 65750212 65750232 CAATTGTCCAAACCCAAAGTG 59 65747409 65747432 CTTAATCTGTCTGACACAACAGTC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 3 2 2 85 10 104997967 104997987 GGAACACCATTTCCCTATCAC 59 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000082221 3 1 2 80 1 214485922 214485941 TGGGATTGAACTTCTATGGC 58 214483113 214485879 AAAGCTGAATTCTGGCTCC 58 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 3 1 1 61 7 15483360 15483381 GTAGGTGAAGGTTAAGTTTCCA 58 15482953 15482972 GCTGTAATTGGTGAATGCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 3 2 2 111 17 5436598 5436618 TGTGAAGTCGTGAACTTACCA 60 5429959 5432943 CGAGGAAAGTAGTTTGTAACAGAG 60 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438 1 1 2 80 20 27255390 27258157 ACGAGGATGGAACTCTTGG 59 27255328 27255348 TCAGTTTATGTTTGGCTCTGG 59 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 1 1 3 83 14 85967804 85968311 GTCAAAGGGCATTCAGACC 59 85965411 85967758 CAAATCTGCAATTGCCACAG 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000020002 1 1 2 83 1 141565951 141565969 ACTGTCTACTGCAATGCCA 59 141565883 141565902 GTTCACCACAGTGCTTTCC 59 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000089222 3 1 2 89 2 243464071 243469412 CATCCAAGGTTTGAACAACG 58 243464001 243464019 GAAGGACTTAACTGGCGAG 58 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 1 2 2 80 13 75178291 75180951 TCACCCATACTCAAGGTCAG 59 75180993 75181012 CCATAAGCGTACTCATCCCT 59 NA Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 3 1 1 60 3 162034151 162034169 TGATGCTGGAGACCTACAG 59 162033680 162033700 AGCTCAGGTTTGGTTATACTG 58 NA DesignNoJunction Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 1 2 2 80 3 3819965 3820332 ATGTTAACTTTGAAGGAGCCC 59 3819905 3819926 TCTTATTGATGCTTGGATGCTC 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 3 4 5 82 X 71311062 71311526 CTCCACTGAGAGCATTCCA 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000068174 1 1 2 80 17 68487270 68489944 CTTCCTCTTACCAGAGAAAGGT 59 68489983 68490003 TGATGCTTCATTTGGATCTCG 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 3 2 3 80 6 108840952 108840970 AGTGAAGTCAGGTGGACTG 59 108841013 108857248 GGACCATCAAATCTTGGACC 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 2 2 3 80 6 108859284 108859304 GTAATGGTTCTCAGTCAGAGG 58 108859345 108862395 CTCTTTCTGTTCTCGAAGCA 58 NA Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 3 2 2 80 2 165522866 165522885 GCTATGGCAGTTGCTAATCG 60 165522696 165522827 GTACCGAACTTTATCGATTTCCC 60 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103 3 1 2 155 18 63357122 63357140 TGAGCTTGGAAGAGATCCT 58 63294480 63357003 ATTCGATAACGCGGATCTG 58 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 2 1 1 60 13 42262671 42262689 GGATTGTTCTGGCTTCCAG 59 42261321 42261342 GAAATTCTTCACACTGGTAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 2 2 2 86 17 58301185 58301204 CATACTGTCAACCTTCCTCG 58 58280157 58301137 CTGCTGGTACTCAGATTGTC 58 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 2 2 2 86 17 58292594 58292613 CATACTGTCAACCTTCCTCG 58 58280157 58292546 CTGCTGGTACTCAGATTGTC 58 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000016891 1 1 3 80 2 243709552 243709570 GTCATCACTGAACTGACGG 58 243709614 243717320 TACAGCTGCTTTCAAGGTC 58 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 2 2 2 80 15 58655665 58656848 TAGAGCAAGCTATGGATCTGG 59 58656889 58656908 TGATCTGCTCCTTCAGAACC 60 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000070907 1 2 3 80 4 183350537 183350560 CTGAAGACTGAGTCTATCAAAGAG 59 183347502 183348571 GTTAAGAAACTCCTGCGGC 59 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000070907 2 2 3 80 4 183350535 183350558 GAAGACTGAGTCTATCAAAGAGTC 59 183347500 183348570 CTGTTAAGAAACTCCTGCGG 59 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 1 2 2 80 13 107790701 107827401 GAACTCATCCAGCAAATAGTGAC 60 107790643 107790664 CCAGTGACTAACTTGATTGGAG 59 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 1 2 2 80 18 56840132 56840151 TCTTTCCAAGAAGACCACCA 59 56839384 56840091 AATTCCTTGTCTTCTGTCCTG 58 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000092075 2 1 2 85 20 27975785 27979744 TGCGAAATTCAACATGGCC 60 27979793 27979811 TCACGATCTTCTCAGCAGG 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000077175 2 1 3 156 7 141346527 141346545 CTCACCTAGGGACTTGGTG 59 141346665 141348669 ATACCGAGTGAAGACCTGG 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191 3 1 3 82 7 141327961 141327979 TATTCGAGACATGCTGCTC 57 141328025 141348670 CATACCGAGTGAAGACCAC 58 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933 1 1 2 80 5 117591576 117592015 AGAGCTCTGAGATTTCTCCA 58 117592058 117592076 TCTCCACTGAAGCAAACTG 58 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000003801 2 1 2 85 10 43885484 43892084 CCTTCTCTACAGACTTCTGGG 59 43885419 43885437 ACACTTGAGACCACTGGAG 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612 3 2 3 83 7 123129594 123129613 ATAATTTCCTGGCAACTGCC 59 123129653 123133987 CTAGAATGATCTGGTGAATGATTCC 60 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000038612 3 1 3 80 7 123143712 123144181 GCAAGGATCCATGAAACCA 58 123144223 123144243 AATCTTGTTGTAGTCAGAGGG 58 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 1 4 4 80 7 122238165 122238964 TGACATGAAGGTGGCAGAG 60 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 2 2 2 80 9 81852156 81854182 ATGTTGCTTCATACTGGAGAG 58 81852096 81852116 CTTGGATAGGTAGCTAACGTC 58 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374 2 1 2 114 7 143162614 143162632 TGATGAACTCCAAGCTGGG 60 143161419 143161828 CTGCTGACACAGACATTCAC 59 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000005772 3 1 2 88 2 235852163 235852183 AAGACAAAGAAGCACCAGC 59 235850392 235850410 TCCTCGATAAGGAAAGCCC 59 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 2 1 1 70 X 72650793 72650811 GGTTGACACAGCAACTCAG 59 72651068 72651086 ATGTTGTTTCTGGGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 1 2 2 80 14 91855035 91855054 AACATAAAGAGCGATGCCAC 59 91855091 91858070 GGTTAGTTTCTTCCTTAATGACTGG 60 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 1 3 3 80 11 67232407 67235050 GGAGTGCATTAGGTATAACTTCC 59 67235090 67235108 GGGCTGCTGTTTATCTCCT 60 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 2 1 1 112 X 106792009 106792027 GATCGACCAGATCCGTACC 60 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 3 1 1 67 1 255573154 255573172 TCGTGCTGAGACTTCATGG 60 255573027 255573048 CTTATGCTTGTTCTTCTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 2 2 2 80 4 9982182 9982200 CTCTATCCCAAACGTGCTC 58 9982244 9990350 TTGTCAAGCTCCTCTTTGG 58 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000084970 1 1 2 103 19 37668761 37669156 AAGAGCAAATTTGACGCCG 60 37669223 37669241 GGGATCTGGTGTACCACAC 60 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000067333 1 2 3 80 7 82058614 82058634 TGCTCTCATCATTCTGAACTG 58 81992028 82058574 ACATAACTAGCTCGCTTACTG 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000050188 3 1 2 94 5 173067803 173067822 GCGATTTGACCGAGATTCTG 60 173067879 173067899 CACATAGTCCCTCGGTAGG 59 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 3 2 2 80 3 60721404 60726729 GTCTGGCTATCATACTGCTG 58 60721343 60721361 TGGATCGCTTCTGTATGTG 57 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 3 2 2 81 2 226696156 226696175 AAACAGGTGTGAGAGGAGAC 59 226694064 226696112 CTTCCCTCAGGGCTTTCTC 60 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000028406 2 1 2 84 1 221298892 221298910 TATACCTATGCCCAGCTGC 59 221297893 221298844 AGCCGAAGATGTCCTTCAC 60 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 3 2 2 80 7 143692858 143692970 ATGACCGAGGCTATGACTC 59 143693014 143693032 CTCTGTAGTCGTCATCCCT 58 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 3 3 3 80 18 56395287 56395307 AGATCATGAGTCATCTCGGAC 59 56395349 56397824 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 2 3 3 80 18 56394491 56394510 AGATCATGAGTCATCTCGGA 58 56394553 56396611 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000021306 2 1 2 80 4 179696350 179696368 AAATCCAATGTCCCAAGCT 57 179693288 179696306 CTGTTTCCGTTCTACTGCT 58 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249 1 1 2 80 1 167076956 167076975 CCAAGGTGAAGGTCCTAGAG 59 167077016 167083464 TATTCAGTTCTTCCACCTGGG 60 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 2 2 2 84 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762102 70762120 GGATGATCAGGGAGATGCC 60 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 1 1 1 100 3 9656845 9656863 GATCTGGATCCAGTGGGTG 60 9659021 9659039 TGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000080524 1 1 2 82 9 82724734 82724942 GATCTTCAGACTTCAGAATCTTCAC 60 82724981 82725000 GAGGTTTCAGTGGTACTCCC 60 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000080524 2 1 2 83 9 82724734 82724942 GATCTTCAGACTTCAGAATCTTCAC 60 82724982 82725001 TGAGGTTTCAGTGGTACTCC 59 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203 3 1 2 113 11 81718355 81718373 GTGAGGTCTTGAAGGAGGA 58 81718009 81718279 GATATTCTCCCTCCTCCCTG 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000077941 1 1 2 82 2 179591448 179591466 GACACCATGAAAGTGGGAG 58 179590536 179591403 ACCGCATTTCTTAATGAGGA 57 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361 3 1 2 103 2 179589764 179591408 AAGGATCCTCATTAAGAACCC 57 179589681 179589700 TTCACCTTTATCGTACCACC 57 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351 2 1 2 81 10 46992956 46993248 GAGTCCTCCTATCGGACCT 60 46992893 46992915 CCTGGAATTGAAGTTAGAGATGG 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 2 2 2 82 1 104151376 104152939 CCTGCAGTTCCAACAATCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 3 2 2 81 18 71525019 71698550 ATGCTCCAGAAGGACTTCAC 60 71524957 71524975 ACAGGAAGGTGATGAAGCC 60 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054 2 1 3 98 11 67642218 67642237 CAAAGAACAAGATCCGGGTG 59 67642298 67642478 TCAGAAGAGCCTTCTTGCC 60 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025700 1 1 4 106 17 70703392 70703410 CACAGTCCTGAAACTGACG 59 70703583 70711169 TCCTCATGTTCTCTGACCTC 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000003741 2 1 7 81 X 70636783 70636803 GGGATGATTGAGTCTAATCGG 58 70639522 70641187 TGGATGTCACTCCCTTCAG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000088114 3 3 7 88 X 70601834 70602154 TTCTTGCGGTGAACAACAC 59 70602203 70602224 CAGATAGACCATGTCTGATGTG 59 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000059545 2 1 3 80 7 27290037 27290141 GTGTTCTCATCCCAGTTGG 58 27295123 27295143 CAAGTGCTCGTCTTAAGATGG 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 1 2 2 80 11 74769164 74769183 AGGAGAACAAAGAGTTGAGG 57 74765351 74769123 TCAGAGATTTCTTGAGCTTCC 58 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 1 4 8 86 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217603 8223846 TTATCCAAACTCCTGGGCT 58 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 1 3 4 85 2 250224120 250224139 ACATGATAGACCCACAGCTC 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000065542 2 1 4 80 15 898430 898450 TTTGTGAAGCTTAAGCTCCTG 59 898489 907071 TAATATTCTGCTCAGTGAACGG 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000066928 1 1 4 85 15 1038527 1043618 CAAACAGAACAATCGAAGATGC 59 1047615 1047634 TCCGTCTCATCTGTAAACCA 59 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000066250 3 1 3 147 10 47065885 47095444 GTCCTCTAGGAAGGGTATGC 59 47095554 47095572 AGCATTCCTCAGGTAAGCT 58 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 3 2 2 165 12 11779910 11779930 ATCTTGGCAATCAGGTATCCA 59 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA InUTR Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622 3 1 2 99 5 139385747 139386308 ATACCAAGAGCCTGTGGAC 59 139395801 139395820 CTTGAAGCAATGGACAGGTG 60 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000090375 2 1 3 84 1 215270226 215273061 CCAGAAAGACTATGCCAAAGG 59 215266468 215266486 TTCTTCAAAGGTGGATGCG 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 2 4 4 80 12 777835 779331 GATGTGAAAGAATGCCTTTGG 58 779370 779391 CTTTCTGATAAATGCATGGCTG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000025415 1 1 4 80 1 154425445 154425464 GCCAACCTTTCATCCATCTG 59 154425506 154439760 GGAGAAGGACTGAATCCTCC 59 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000046798 1 2 5 80 20 3413574 3413592 TACCCAAGTCTTCCCATGC 59 3412553 3413530 TCCAAGGTATCTGCACCTG 59 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322 3 1 2 152 1 84147763 84147781 GGTATCCCTCAACTGGCAG 60 84142696 84147225 ATCAAGGGACATAGAACCCG 59 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028 2 1 2 87 12 25497181 25498332 CAACACTATGTGTACATGTTCC 58 25498380 25498398 GGAACTCGTAGATCTCGGT 58 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000089524 2 1 2 91 3 97389367 97390785 CAAAGAAACACAGCCATTTCTC 59 97390831 97390855 GAGACTAATGATTTGACCATCTCTG 60 NA Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 1 2 2 82 7 11239683 11239701 TTGTAGTGGCTGTCAAGCA 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 2 3 10 89 7 117248581 117249304 TACTGCAGTCGGATATTCGG 60 117248511 117248529 TACCATCAGCCTTGTCCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 3 3 10 89 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248510 117248529 ATACCATCAGCCTTGTCCAG 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000081021 2 1 10 89 7 117253868 117257199 GTTGTGTAGATGAACGAGACC 59 117253490 117253508 CACTGATGTGCCTTTGAGC 60 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000081245 1 1 2 80 14 106233393 106234245 GAGAGTAGTTCAGGATCTTAGCA 59 106233335 106233356 TCTAGTTCTTGGAGAATGACCT 58 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 3 2 2 80 13 101018066 101018089 ACCTGAGTGGAATTACATAGATCC 60 101018128 101018857 AAGGACATCCAGAACTCGC 60 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 2 2 2 89 17 80658554 80662341 CAAAGAGTTTAGCCTGCGG 59 80658483 80658504 GATAATTAGCAGGGTAGTTGGG 58 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 2 2 2 95 3 175477712 175477732 CTGGTGGTAGACTACCTACTG 59 175476319 175477655 GTAGGAGACAGCTCGAGTG 59 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 1 1 1 77 8 43480695 43480713 TTCCTCTTCAGGCCTTAGG 58 43480604 43480622 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000031653 2 1 2 81 12 2213720 2213739 ATCAACCCAGAAGAATGCAG 58 2213783 2214013 GGATTGTGAGCACCTTCAC 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 1 2 3 80 13 78928337 78928355 TAGTCCCAAGTTCCTGGTG 59 78925973 78928294 TCATCTACCAAGTCTCTGCA 58 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000045400 2 1 4 108 5 141074654 141076136 CAGTCTGCTCAGTATGGTG 58 141074527 141074545 CTACTTCAGCAGGGATCAG 57 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000081669 3 1 2 82 1 164129060 164141360 AGCTCTGTAATGGGCACTG 60 164128996 164129014 ACCTTGGATCTGTTGAGCC 60 NA Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 1 1 1 91 7 123579013 123579031 AGGTCAGTCATCGTCACTC 59 123580723 123580742 GGGATCACAATGGAGAACAC 59 NA DesignNoJunction Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000083419 3 1 2 134 8 53736801 53739332 GACACCACTCAAGGATGCT 60 53739429 53739448 GATGGATCAGGGAGAGTGAG 59 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 3 2 2 80 6 111077266 111077701 ACACAATGACAGCCTAACC 58 111077745 111077763 TCTGCCTCCAAGTAAACCT 58 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 3 2 2 101 4 178069484 178075007 AGATACTGGGATCTCGTTGG 59 178069402 178069420 CTGGGTACTTCTCCAGGTG 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 3 4 5 81 9 43834354 43834373 AAGTATCCAGCCAGGAAAGG 60 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 3 2 3 81 19 53638211 53639688 CAGAAGAACGCAAACAAAGAG 58 53639731 53639749 GCTGTAGAACCTACTGGGA 58 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423 3 1 2 85 5 171458088 171458107 TACAAACATGCCCTATGCCA 60 171457332 171458040 AGCTTTCCAAATGGCACAG 59 NA Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 3 2 2 80 8 105335791 105335922 GAGTTCAACTTAGAGGTCAGTG 59 105335732 105335750 TGGCTGCACAATAAGATGG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 1 2 2 97 3 79258840 79259951 AATCCAAGTTAATCCGAGTGG 58 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 2 2 2 106 17 76008900 76016082 GTTCTGAGGTCATGATGCTG 59 76016151 76016169 AATATCACAGCTGGCAACC 58 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440 2 1 3 80 6 122754134 122754155 TCAACAGAGGCAATTGTTATCC 59 122754191 122759249 TCATAGTAATCTTGACTCAGCTCC 60 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884 2 1 2 80 10 14528177 14528195 CTCTTGAACTTGGTGACCC 58 14528238 14528259 CAGAGATGTGACCTTTGCAG 59 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000059181 3 1 3 85 5 78516513 78520943 GAGAGGAAGAAACTTCACCCT 60 78520990 78521008 AAGCTTCTATCCTGGGTGG 59 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450 3 1 2 139 2 198439030 198457795 TGGACATGTTCCAGTTGGT 59 198437841 198437859 TTGTGGAACTGTCTCCCAG 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 3 2 3 80 1 79077669 79077687 ACACCCTACGAACTCTGAG 59 79077731 79078833 TTGAGGAAAGGGAGGTGTC 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069 3 1 3 139 13 79886886 79886904 CTCTTCTCGGTCGTACACC 60 79887005 79887940 CAACGCAACTAAATTCCAAGC 59 NA InUTR Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 2 1 2 69 15 28018055 28018073 AAACAAAGCCGTCATCTCC 59 28034121 28034139 TGGGTCCTCTGTATGTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 3 2 3 126 20 40667642 40701728 CACAGATTTACTCTGTGATGAGG 59 40701814 40701832 AGTGAACTCTGGATGTCGG 59 NA InUTR Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000089899 1 1 7 82 9 43740120 43740138 AAAGGAAGGAGAGTGGGTG 59 43740184 43743119 CACAGGGAACATCTTGCAC 59 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000030056 2 1 2 135 7 34788950 34789227 TGTGTCAGTGTTTCAGGTC 58 34781302 34781320 ATCACCATCACCATCTCCA 58 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534 3 1 2 81 10 8654624 8654643 CCTTCTGCATTCTTATGGCG 60 8491780 8654580 TGCTTCCTGATTACCCTGC 60 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000090218 3 1 2 100 4 152960562 152960581 TCAAAGTATGACTGGTCGGG 60 152960644 152966544 ACCCAGTCTACCTTGTCCT 60 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000041994 3 1 4 84 16 23553675 23555931 GCTGTTGTTATGGCTATTGC 58 23555978 23555996 TCCAGAATTTCAGTGCTCC 58 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 2 2 3 92 13 83085514 83085533 TTACTTCGAGTCAGTGCTGG 60 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155 3 1 2 94 3 112118678 112122236 AAGGATGTTGGTTGTAACAGG 59 112117916 112117934 AACTGGGAAACCACATGGA 59 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000085132 1 1 2 80 3 112119182 112122237 GAAGGATGTTGTTCCAGCAG 59 112118652 112118673 TTGGACTTCTCTAGTGTTACCT 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000007287 1 1 2 81 6 49844346 49844454 GTTTCAGATAACTGGAGGATAGAC 59 49844288 49844306 AGTTCTGCCCTCGATAGTC 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000080950 1 1 2 81 6 124398055 124398074 ACATATAGTCTGCAAGCCAC 58 124390605 124395522 TTTGAATTTGCAGAAGTGCC 58 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 3 2 2 80 18 77291672 77291690 CACTATGAGACGGAAGGCA 59 77275847 77291630 CAAGTAACCATGTAGCTGCAC 60 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 3 2 3 80 7 71065584 71069220 TTGGGAACAGAGGACTCTG 59 71069262 71069282 GTTTGTTCATCCACTCATTGG 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025045 1 1 10 81 9 95296579 95298734 TATCCCAGGAATTTGAAGCCT 59 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000063853 2 1 10 80 9 95286390 95286410 CCCATCATGCCTAATATGGTC 58 95286449 95298736 ATAGGCTTCAAATTCCTGAGAG 58 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 2 2 2 80 4 99410037 99413191 CCAGTGATCCCAGGTACTG 59 99413234 99413253 TAGATGTGCTTGTTTGTGGG 59 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374 1 1 2 83 4 99414431 99414454 TGCCAATAAATGTGTCACCAG 59 99414499 99414517 TCCGGCTCCATATCTTCCT 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 4 6 115 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566985 3567003 CATAGTCATAGCCTGGCCA 59 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827 2 1 2 83 4 118871041 118871244 TACAGAACAGCTAGGACTCAG 59 118874560 118874579 GCTTCCTTTCTTGTCTTTGC 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 2 3 4 82 7 124230077 124233815 CAGTTTGAGGAGTGGTCTG 58 124230013 124230031 GTTAGGGTGACACCATCAG 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991,ENSRNOT00000002705 2 2 5 80 14 22252220 22257634 AACTCTAGGAAGACCCACC 58 22257676 22257696 TCAATATCCCAATACGTTCGG 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000036483 1 1 4 80 13 79784544 79784567 GGAAACAGCGAAGTCTACC 58 79784482 79784500 TGCCTACAACTACACTGGA 58 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 3 2 2 101 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780660 117780680 ATCTTCTTGTCTCTGGAGCTC 59 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 2 2 2 101 3 3657614 3657633 CAAGTGTCTCAAGTGCAGTG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 1 2 5 85 18 79413266 79413284 TACCCTGGCTAAAGCAGAG 59 79413331 79424851 GTGTGAGTCCTTGTACATGTG 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586 1 1 2 80 1 15974758 16109248 TGCATGCTAGGAGATGTACG 60 15974697 15974717 GAAGTCAATGAACGGGTAGGA 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000091677 1 1 8 138 6 64808341 64810645 CTCTGAAGGTGATTTCAGCT 58 64810746 64812926 GGAGTAGGTAGGCCTTCTG 59 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000005467 3 1 2 81 13 94832770 94832791 ACCTCATTCTGCTATTTCTGAC 58 94832708 94832728 GAGGTAAGTGGAGTCTCCA 58 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000081125 1 1 2 80 7 2984512 2984565 ATTTCCGTAAATGACCAGGAC 58 2984364 2984382 GAAGCCATCCACATGAACC 59 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000042281 3 2 4 81 8 53879399 53883726 AGAAGCAAGAGACTCTAGATGG 59 53879339 53879357 TACTGGATGCTCTTCAGGG 59 NA Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 1 1 1 79 10 109278974 109278992 CCTGAGTAAGGACCTGTGC 60 109280646 109280664 CCATCATGGTCTTCTTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 1 2 2 87 1 36304885 36308226 TGGAGAAGAGTGAAGGTGC 59 36304816 36304834 TTCCACTGTGAGACTCCAG 59 NA Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 2 2 2 88 1 36304885 36308226 TGGAGAAGAGTGAAGGTGC 59 36304815 36304833 CTTCCACTGTGAGACTCCA 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 1 2 4 107 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779540 226779558 AGCCACTTAGCATCACCTG 60 NA Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 2 2 2 80 18 68987280 68992051 GGAAACCTATACCGTATTGAAGG 59 68992088 68992109 TCTGTGTTCAGATTTGTAGAGG 58 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 2 2 2 80 20 12335484 12335557 GACGGCTTGAGGTACTACC 60 12335422 12335440 CACAGAATCCTCCAAGGGA 59 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 3 2 2 80 X 110862323 110862341 GCAGTTAAAGGCAGATGCT 59 110862385 110868099 GGGCCAATTTCCTTGTCTC 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000090572 1 1 2 80 15 107971211 107971963 ATGTGGAGGGATTCTTCGA 58 107971149 107971167 AAATCTCTGACAGAGGCGT 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000090572 2 1 2 80 15 107971211 107971964 GATGTGGAGGGATTCTTCGA 59 107971150 107971168 AATCTCTGACAGAGGCGTG 60 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 2 1 1 96 4 100481918 100481936 TGCTTACCACAACAAACGA 58 100480788 100480807 CAAACGTTGGTAGTCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000008659 2 1 2 87 10 86870924 86876156 CAAACCACTCCATCGAGAC 58 86876207 86876225 TTGTAGATTCGAGGCAGGG 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459 2 1 4 187 16 6189094 6189351 ATATGTCAGACCCTACAGCC 59 6187654 6188946 TCGCTATATCTTGAATCTGCG 58 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 2 2 4 73 13 80440921 80440939 AACCTATCTGGAGCTGTGC 60 80439265 80439283 CACATCCGATCACAAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 3 2 2 80 10 27145125 27145143 GTGCCAGTTGCAATTACAC 58 27142648 27145083 TCACGAGGATAACCATAACTG 57 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000077461 1 1 2 80 10 47529373 47529391 AGTTCAACAAAGGAAGGCT 57 47528452 47529332 CTTGGTATTTCTTGACGATCAC 58 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 1 2 2 80 3 5473684 5473704 TTTGGAATCATCGCACTTCAG 59 5472613 5473072 TCCTAAAGCCAGGTTCCTC 59 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 3 2 2 80 3 5472624 5473087 CTTGAAGTTTCTGATGAGGAACC 60 5472566 5472584 CTCTTCCCTTCTGAGCGAG 60 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000061303 1 1 5 80 3 2264986 2266018 CCACAACTATGCAAGCTCTC 59 2266061 2266079 CAGACGCGGAATCATTCTC 59 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 1 2 2 80 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027270 48027291 ACTGGAATATTGAAGAAGCCCT 60 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 3 2 2 82 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027268 48027289 CCACTGGAATATTGAAGAAGCC 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692 1 1 4 80 1 102779574 102782598 GTGAGATTGTTTCTGGCAGC 60 102779513 102779531 CATCACCACTGACTCCCAG 60 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769 1 1 2 80 19 118951 118972 CACTCCTGCAGAAATATTTGGT 59 118694 118911 ATTCAGTTTGAGGTTGCTGG 59 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411 2 1 2 84 1 218097792 218098350 AGTTGCTGCAAATGGAACTG 60 218097727 218097747 AAGTGTTCGATGAAATCGTGG 59 NA Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000010243 2 1 2 81 8 2662685 2678115 TCTGCATCAGAATCCAGGG 59 2678158 2678178 GCATTAGATGTGATGCATGGG 60 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000044659 1 1 3 80 14 28609615 28609635 TGGACAAGTTTCCTACATCTC 58 28536241 28609574 GTGGTAGAAATCCCTCTGAC 57 NA Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 3 2 2 104 4 157515291 157515976 CTTCAAGTTCTGCTGGGAC 59 157516044 157516062 GGAGACAGGTCTGTCAGTG 59 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 1 2 2 81 7 125848024 125849365 CCAACCTAGGCAACATTCTG 59 125849406 125849427 ATAAGGACATTGTTCTTCCCTG 58 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033 1 1 2 80 17 67898797 67898817 CCACTGGTTTCTAACCTTCTG 59 67888182 67898760 GTACCCATGTCCATTAACATTCTC 60 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 2 2 2 82 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797742 11797760 GTCCATCTCATCGAAGAGG 57 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 3 2 2 81 2 243845980 243848807 TTGGCTAGAGACACTGCTG 59 243848851 243848870 AACATTGACAACAGCTCCAC 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000089744 2 1 2 80 2 243840141 243841150 CTGTTCTTCCAGAGGAAACC 58 243841191 243841211 CAACCTCCTGATTAGACTCTG 58 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000084590 2 1 2 80 9 93815919 93815938 TTGTTGCTCGTAATAGAGCC 58 93829736 93845272 TTATCCTTGGCTTCCAAGTC 58 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000077172 3 1 4 100 7 117711149 117711168 CTCGATGAGATGGACCAGAG 60 117710666 117711087 CAGTGAACATCTGTGTAGCC 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 3 2 2 80 8 112661828 112668500 GAAGCTCTATGAGCATGAAGTC 59 112668540 112668559 AAGGTCAGTAAGCGGATCTC 59 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 1 2 2 80 6 125657738 125657757 GCTCATACTTCTGCTCATGC 59 125656724 125657699 GCTCACATTCATTGATATCCTGG 60 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000087636 3 2 3 80 2 62208375 62208504 TATTCTCAAAGGCAGCCCT 59 62208547 62208566 TGTTGGTCAGTCATTGTTGC 59 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196 2 1 3 80 2 62193112 62193132 GACAGTTTGTCTGAACATGAG 57 62193172 62194512 TTTCAGAGCTCTGTCTTTACC 58 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000073268 2 1 2 83 4 123489645 123494344 ATGAACACTGTCCAACACTG 59 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000084739 3 1 2 118 19 43356068 43356086 CAAGTGAGTGGCCTAATGC 59 43356168 43356873 GCCATAAGCTTCCTCTGGA 59 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 1 2 2 80 13 111068450 111138409 TCATGATGATTGGCTCCCT 59 111138453 111138471 TGGTGTTGGCATACATCTG 58 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451 2 1 3 80 9 111173236 111173254 TGGTTATTCCTGTGCTGGT 59 111173298 111176043 GGTCATGATCTCCAAAGGC 58 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 1 1 1 69 8 37704182 37704201 TGCAATATGGTACATCGCTG 59 37702372 37702393 GTGTCAAGACTCAATAAAGAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214 1 1 2 80 13 103323471 103324760 GGTAGATGGATGGGATGACC 60 103324803 103324821 TGCTTCAGTCCCTCAACTG 60 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214 3 1 2 81 13 103323470 103324759 TGGTAGATGGATGGGATGAC 59 103324803 103324821 TGCTTCAGTCCCTCAACTG 60 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 2 2 3 87 12 22750793 22751045 TGAAGAAAGATGGACTGGTAGG 60 22750727 22750745 ACAGCCAGTCCAATGAGTC 60 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000021258 3 1 2 83 9 112008510 112023485 CAAAGACGAAGACAGAGAACAG 59 112008448 112008466 CTGCTGCTCTCATTGACCT 60 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 1 2 2 80 7 124001737 124004079 GGCCAAACAGAATTTGTATGAC 59 124001678 124001696 GCTGCAAACTTCATCTGCT 59 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 1 2 2 105 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362993 81363011 GAGTGAGACACAGAGGCTG 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 3 3 3 81 10 109714264 109714510 TTTGAGAATGTCCAGTGCTG 59 109714554 109714572 GTATGGCCAGGAGTACAGG 59 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 1 2 2 80 1 273717501 273717519 TCCCTGAGACGAATAGGAC 58 273716183 273717460 CTGTAGTTCCATCCTTGTACTG 58 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000083941 2 1 2 94 15 33725039 33725061 ACTCTTCTCCAATGCTTATCC 58 33724965 33724983 AAACTGAGCAGCATAACGG 59 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102 1 1 2 80 15 33727228 33729346 CAGATCACGGTATTCTGCT 57 33727166 33727185 CTGGGAGAGTGTATGAACTC 57 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102 3 1 2 80 15 33727230 33729349 AACCAGATCACGGTATTCTG 57 33727169 33727189 GGAGAGTGTATGAACTCTCAC 58 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 2 2 3 80 18 72571541 72571562 AGGACGATTAGATGAGCTTGAG 60 72571603 72593008 GAGCAAGTGCTTGGTATGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 3 2 8 80 6 128050871 128052895 CTATTTAAAGGCAAGATGCAGC 59 128052935 128052954 AGGGATCAAAGAGTCCTTCC 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000083830 1 1 2 94 7 125940510 125947135 CTAGACAGGATTCACAGATGG 58 125947795 125947813 TTGCTTCCTAATGAGGCTC 57 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000012397 1 1 2 119 4 152243752 152243770 ATCTGAAGCACAAGGAGCA 59 152214561 152243669 TCAACAGCTCTTCCACCTG 60 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155 3 1 2 81 2 208633772 208633794 CAAGACCAAAGAGAATGAATCCC 60 208623046 208633737 GTATTTATTCACCTTCCCATGAGTG 60 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 2 2 2 83 1 198089529 198091652 CAAGCAAACCCAGGAAGAG 59 198091699 198091717 TTCTCTGTCTGCATTCGCT 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 1 2 2 87 17 82080659 82080677 CTTATGTGGGACATCGGTG 58 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032 2 1 2 124 7 126444024 126461581 GCAGCTACCTAGCATTGTC 58 126443918 126443936 GATCACGATGATGGCATCG 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 1 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696097 238696117 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138 3 1 2 81 1 1773348 1774172 AATAACCAGACCCTGTCCG 59 1774217 1774235 CACTGCTATAGGAAGGGCT 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000090170 1 1 2 83 13 49880313 49881077 ATCCAGAAGGATCCCAGTG 59 49882771 49882789 TAAGTCCAAGATGGCTGCT 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 2 2 3 80 6 126116856 126116876 CTGGAAGATGGTAATGACCTC 58 126116918 126121100 AGGTTTCTCCTTCACTTGC 58 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600,ENSRNOT00000041639 2 2 2 108 14 77326629 77328658 TCAGCCAGTATTTCAGGAGTC 60 77328728 77328746 ATGAAGTCCAGGATCTGCC 59 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 3 2 3 80 19 10199074 10199595 GAGATAAGCTTGCTGGCTG 59 10199637 10199657 AATGAAGAGATTGGTGAAGCC 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 1 2 2 94 10 86991678 86992142 TTTGGAAGCAATCAGTCCC 58 86991602 86991620 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017 2 1 2 80 13 109442305 109442325 GGAAGATGACTATGAAGCAGC 59 109403591 109442265 CTTAGTGCTCCTTGTACACCT 60 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 3 1 1 99 8 76452398 76452416 CCTAAGCAGCCAAGAAGGT 60 76450803 76450821 GAACCTCCTCCATGAAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080820 1 1 4 80 1 63842420 63842602 TGATCTGTCTTGGACTGACTC 59 63842822 63842840 GCTGTGCTCTGAGGATAGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026252 3 1 4 98 1 81126079 81126098 CTAAGGAGGAGTTCAGGCTG 60 81124968 81126020 GTTGATACTCCACTGAGAGCA 60 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 3 2 2 80 6 135235585 135235715 CATATGCACAGAAACGGGA 58 135234515 135234534 CCCTAGTTTCAGGACATCCT 59 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000085708 1 1 2 80 6 23277651 23277673 GAGATGGAACGGATATGACTC 58 23276776 23276794 TTACAGCTGTCTCAACGTC 58 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719 3 1 2 80 15 34456333 34456353 CTCCTCCTGGAGAATGTACTC 59 34455336 34456292 ATGGTAGAGGTCCTCATTGC 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 2 2 2 80 4 157483387 157483588 TGACTACTTAGCTGAAGCCA 59 157483326 157483345 GTGACAACTGACAGATGTCG 59 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 1 2 2 80 7 12274713 12274732 CTTAAGACAGGAGCTGAGGG 60 12274485 12274670 TTCAGGACCTCCTTCATGC 59 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 2 2 2 81 7 12274714 12274733 ACTTAAGACAGGAGCTGAGG 59 12274485 12274670 TTCAGGACCTCCTTCATGC 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911 2 1 2 93 7 118715144 118715163 ACCCTCAGGACAAGAAAGAG 59 118716609 118717564 GCATCTTCCTCTTTCGTGG 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 1 4 4 80 1 250692825 250693531 AATCAGCAAGTGCTGAAGG 59 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380 3 1 2 91 18 77401941 77401959 CCTGGTACAGTTGTTCGGA 59 77384132 77401886 TTCTGAGTGAGCGTTCCTG 60 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 2 2 2 80 7 126127689 126127708 ACATGTCAGAAGAATGTGCC 59 126127751 126128426 CTCATCCACGTCAACACAG 59 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974 1 1 2 83 16 32833572 32833590 TTCGTCGATAATTCAGCCC 58 32832511 32833527 CTGGAAGACTAAGTCCATCTG 58 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324 1 1 2 87 6 127650075 127650093 GACCGGGTCAATGAATTCC 59 127649640 127650024 AATCCAACAGACTCCACGT 59 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000015516 1 1 2 82 6 127651198 127651216 AAGATGCAGCAGGTAGAGG 59 127649639 127651152 AAATCCAACAGACTGGGCA 60 NA Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000081992 1 1 2 80 9 98636524 98637859 GCAGCTTGGAAGGAAAGAG 59 98637900 98637921 TGATCTGGTTCGTCATTTAGTC 58 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 2 1 1 60 X 124228618 124228637 GAAACTCAGTACCCAGATGC 58 124232887 124232907 CATCCACATTCATGAGCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 1 2 2 80 10 70150132 70150151 CCTGGCTGACATGATAAACC 59 70150193 70150446 GGCTCATATGTACCCTTCAC 58 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000083539 1 1 3 96 11 82760627 82760645 TGTCCGTCCAATCATCCAC 60 82759504 82760567 TGAGGCCAATCGCTTAGTC 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 3 3 7 98 15 34668455 34668474 AAACACCCAGGTCATCTCTG 60 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000082105 2 1 2 80 6 64268241 64281428 CCCTTATGTCCTAAGGATGGA 59 64281467 64281488 TGGCCAGATACATTTACATTCG 59 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 2 2 3 80 20 35272849 35272869 GACATACATGTACATGTGGCG 60 35260886 35272807 CTTTCTAGGGCCTCTACGG 59 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071503 3 1 2 111 1 100710495 100716859 AAACTTGTCAGGATGGGCA 60 100716934 100716952 GTTAGGATGGCCAATCCCA 60 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725 1 1 2 94 6 96848892 96848910 TTAAGAAAGAGCCCGATGC 58 96848968 96849571 TTCAGTTTCCGTGTCATCG 58 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000077935 1 1 2 80 6 96848912 96848930 CTGACTCTGCTAGCTCCAG 59 96848973 96849571 TTCAGTTTCCGTGTCATTGC 60 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 2 1 2 81 2 86470236 86470256 GCGAGAAGCCTTATAAATGTG 58 86470171 86470195 TCTAGCATGAAGTAGTGTCGA 58 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 2 3 3 80 10 35875729 35875747 AGGGTATAACAGCATTGGC 58 35875791 35875900 TCATAGCCTCCATAGCCTC 58 NA InUTR Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058 3 1 2 80 3 1547216 1547501 GATGGATGATAGTGACCAGGA 59 1547156 1547174 CGAAGATGCTTTCGAGGAC 59 NA Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 3 2 2 80 17 1047033 1047051 GGTCCTCGCTTACAAACTC 58 1044951 1046990 AGACGCTGTTTAGTCAACTG 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 1 2 3 80 20 3992005 3992023 GAACCATGTCTGGTTGTGC 60 3992066 3992453 TCCGCAGATAGTATAGCCTG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000037100 2 1 3 114 13 52282369 52282388 CTCAGATAGCATCTCCAGCC 60 52278946 52282292 ACTTCGAAGTTGGGCTACC 60 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 3 2 2 80 1 217027264 217027283 ACTTCTGCCACAGATTTCTG 58 217027323 217027952 ACTTATTTACAATCCCTGCTGG 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138 1 1 2 86 10 13970698 13971981 TGGTCCGCAGAATACAGAC 60 13970630 13970648 TCAGGTTGTCATCAGCCTG 60 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000016221 3 1 2 81 10 13967965 13967983 ACAAGTCATTGTCAGTGCC 58 13967285 13967920 GAGGAGAAAGAAGCCACTG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000085670 3 1 3 81 2 250763227 250765224 TCGGATATGACAGTTGGAGAG 59 250763166 250763185 GGTACTGTCCACAGGTACTG 60 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596,ENSRNOT00000055285 3 2 2 101 7 144867693 144868593 GATTTGGCAATGATGGAAGC 58 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000001200 1 1 3 80 12 30083036 30083054 CCAGTGTATGGAAGTTGGC 59 30082908 30082992 CCGATCATCTCTTCAGGGT 59 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 1 2 2 80 4 153929440 153929459 TACCTGTTCAGCTCCTTCAC 60 153929501 153930277 AAAGTCCACGCAATGTTCTG 60 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000040306 3 1 2 187 3 104168262 104176576 AAATCTGGAGGACAGGACC 59 104167797 104168112 TCATCAGTGTCTCTACAGCT 58 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 3 2 2 87 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108087 25108106 GGGTTGGCTACTTGATTGAG 59 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000060264 1 1 2 117 5 59411358 59413637 AATTGCTAAGATTGAGGCCTG 59 59413716 59413734 CACCTGGGAGATGATGAGG 59 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 1 2 2 80 3 11704124 11706117 ACTTGGTCTACCACTCCAG 58 11706160 11706179 TCTTGGAGGTAAAGGATGGT 58 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000089010 2 1 5 190 6 80272202 80277964 AATACAGCATTTGGCAGAGG 59 80278117 80281940 GAATATGGTTGGCCTGGTG 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 3 2 6 128 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800564 53801358 GATTGTTCCTCAGCCTCCT 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000085582,ENSRNOT00000004295 1 3 6 80 10 53721428 53749674 TCATCGAGAAGCCAATGGG 60 53749717 53749736 TCTTGAAGGAGGTGTCTGTC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 1 2 3 80 2 123348675 123348693 TTTCCAAATGCAGGAGGAG 58 123345086 123348632 TGAAGAGGTTTAACCTGGAC 57 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000085887,ENSRNOT00000009904 3 2 3 80 4 162017586 162017605 GGAAGGGAAGTCTAGCTGAC 60 161953940 162017547 GTAGGAATCTCAGTTCTTCTTGG 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000072073 3 1 2 84 1 261177911 261177931 TCCCGTGGTATCAGTAATGAG 59 261171646 261177871 GTAAATTTCTACCTTACAGGTGACG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 2 3 7 80 1 83716244 83716264 CAGAACCATAGTACCCTGGAC 60 83716304 83763148 ATATTTCTCCTCTTGCATGCG 59 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256 1 1 2 92 7 119826091 119826109 ATACAGCTGAGCTCAGCAG 60 119826163 119828038 CCTTCAGTTTCTGGATGTCCT 60 NA Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 1 2 2 80 10 110527297 110527317 CCAAGTTTCAGGTTCCTTCAG 59 110526899 110527256 CTGCACAGATAGCAATGACC 59 NA Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 3 2 2 80 10 110533804 110535466 AACCCTAAAGGCCTCTGTG 59 110533742 110533760 TACATGGCCAGTGTGAGTG 60 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760 1 1 2 120 3 14990816 15037154 CAATGAGAGGTCCCATCTG 57 15037238 15037256 CTTGATAAGCACCTCCTCC 57 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000084218 3 1 3 83 X 10126873 10126891 GCTAATGGTCATAGCAGCA 58 10128313 10129910 TCTTACATAGATCTGTCGTCCT 58 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000024900 2 1 3 131 2 199893172 199893190 GAGAGTATCCCAGCTGGAG 59 199891633 199891653 GATATGACAGTTCGGGCCT 59 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000024900 3 1 3 132 2 199893172 199893190 GAGAGTATCCCAGCTGGAG 59 199891632 199891652 AGATATGACAGTTCGGGCC 59 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000088041 1 1 3 80 2 199891577 199891599 GTTATCTTCTCACCCAACATTCG 60 199891515 199891536 CCCAGGTAAGTCAAGTCGT 59 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000088041 3 1 3 80 2 199891648 199891671 ATTCTTTGATTCAGGGCCC 58 199891586 199891607 GGTGAGAAGATAACAAATCCCT 58 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 1 2 2 80 4 57760339 57762692 ATATACGGACAGGCAATGG 57 57762734 57762754 GTCTGTGCTATAGATGTAGCC 58 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000002010 1 2 3 80 12 25350155 25363306 CATCCCAAAGCCTGATGAG 58 25363350 25363368 TTGAAGAGCTCCTTCACCT 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000061398 2 1 4 80 17 4257430 4257453 CTTCCAGTATGTGAAGGATAATGG 59 4257490 4258005 TACCTACACGTTCCATTCAGG 60 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 1 2 2 80 4 123662976 123662995 CTCTGCCTCCTCTTAGTCTG 59 123657790 123662934 GAAGTAGACAACCTTGCCTG 59 NA Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 3 2 2 80 13 26988644 26988666 GCTCATTATACTCTGAGTATGGC 59 26988703 26989174 TATGTCATCAGAGTATTCCGGG 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 1 3 5 80 9 97989254 97989272 TAGTGGCTGTCTTTAGCCT 58 97975848 97989212 TCTTGTTGACTTCCATGACTG 58 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000085483 3 1 2 82 4 56815548 56815567 CTCAGGAGAGCTTTCTTGGT 60 56815612 56820315 AAAGCCAAACCATGTGGTC 59 NA Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 2 2 2 80 17 9779647 9779669 GTGGATTTGGAGAATCTAGTGAG 59 9779481 9779608 TTCCCTTGTCTTTGCATCTG 59 NA Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 3 2 2 80 15 38192632 38193687 CATCGAGGTTTATGGGTGTC 59 38192571 38192590 CACTCCCTTAATGCTTTCCT 58 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000050284 3 1 3 98 13 52668006 52673642 AGGAACAGGAAGAGCAAGAG 60 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 1 2 2 80 10 49259692 49263164 TGGAACAATATCTCAGGCCTC 60 49263205 49263224 GTCATGTGTAGCGTTGTAGG 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000079535 2 1 3 93 8 82151366 82151384 GATGTTCTACATCGTGGGC 58 82151439 82153484 ATTGTACCTTATCTGCATGCC 59 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000066037 3 1 2 100 7 11695642 11695789 GAGTTACAGAGATGGCAATTCC 59 11695563 11695581 AGATGTCTGCTTCCTGGTC 59 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000049974 2 1 2 97 11 70140169 70140187 TGACGTCATCCAGATGACG 60 70130712 70130731 GATAGTCCTCCACCTGTCG 59 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000090912 3 1 2 180 2 104882098 104882119 TGAAACAAGTAAACTGTCCCAG 59 104883113 104885891 CTCCATCACAGATGTACCCT 59 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 3 2 2 80 6 104280893 104283649 GATCTCAGCTGTCTTGTTTACC 59 104280834 104280857 GTAGATCTTCTCTTTGATCCAGTC 59 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000085646 2 1 2 80 6 104288054 104289623 TTACCGGTGATTTCTCACAC 58 104287993 104288014 AGACTCATAGTCAGCATAAGTC 57 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000085646 3 1 2 80 6 104288054 104289624 ATTACCGGTGATTTCTCACAC 59 104287994 104288015 GACTCATAGTCAGCATAAGTCC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 1 2 5 81 11 78309227 78327255 ACTCAATTTAGTGAGCCACAG 58 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000057216 1 1 2 80 5 128881535 128881870 GCATAAATCCCTTCTCCACAG 59 128881910 128881930 GCCGGAATTTACCGTAATCTG 60 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116 1 1 2 102 7 107585865 107585883 GATGACAGCAGCAACTTCG 60 107585780 107585801 TCTTCAAAGTATTGGGTGCTG 59 NA Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 2 1 1 60 18 15918629 15918647 AGTGAACTTGATGACCCTG 57 15918358 15918376 CAAGTACTTCCCGTTTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 3 1 1 138 7 12437430 12437448 ATGGAAGTTGGAGTCCAGC 60 12438828 12438847 TTGAATGAAGTCAGCATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 3 2 4 81 8 117890854 117890872 TCAGTTTGCTGCAGATTGC 60 117889579 117889799 AGACAGAACTTCCTCCACAG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000035576,ENSRNOT00000036283 2 2 8 136 1 226463362 226468034 AAGAAAGCCATCAATGGCAC 60 226468133 226468151 CTTCTCAAGGCGTCCTCTC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036180 2 1 8 84 1 226467055 226467073 TTCCTATCCTCCCAAGGAG 58 226467121 226471445 GTCCTCGAAATTGAGGGAC 58 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000086588 3 1 2 96 2 199840510 199841157 ATATTTCATGTGACCCAGCC 58 199843597 199843616 CTAAGGACCATCACACTGTC 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 2 2 2 80 11 81785800 81789546 TCGTTTGACAAAGGAGCAG 58 81789589 81789608 TGTCCTGTACTAACCAACCA 58 NA Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 2 1 1 70 1 213745589 213745607 TACCTGAATCTGTGCTGCC 60 213744989 213745007 GCTACCTTCTTGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206 2 1 3 133 5 167983329 167992640 AAATGATGAACGGCAGCTG 59 167983214 167983235 GCTTGCTGTAATATCCTTGAGG 59 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 3 1 1 114 18 25370440 25370459 TCATCAGTAAATGCCATGGG 58 25369987 25370007 CATAGGAACATGTTGTGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000085516 2 1 2 109 18 24874193 24879958 TGGAGTCATCCAGGTTTCAG 60 24880030 24880048 CACTGCATGTGCAGATCTG 59 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011 3 1 2 107 18 24874108 24874126 GGAGATCCTGGCTTCTGTG 60 24874197 24874528 AATACCAGGCCTGGATGAC 59 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000085799 1 1 3 92 10 70566558 70580550 GATAGCCTGGTAGGACAGTC 59 70580605 70580623 ATTCAGACCACTGCTGACC 60 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356 3 1 3 95 3 118137360 118152170 TATGACAGATTGCTGAAGCT 57 118152225 118152246 TATTATGTTCACTCTTCCTGGG 57 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 1 2 3 80 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973768 70974218 CAGTTAGTAGTACAGCAAGCAG 59 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000019319 2 1 2 120 1 4786018 4786037 TCACGACCTCTGATGTTGTC 60 4756913 4785936 CCGTTAGAATTGGCATTCCC 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 3 2 2 108 7 49429648 49531755 GGACAGAGATGTTGCAAGAG 59 49531825 49531844 AAACTCACTCTGAAGCACCT 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221 3 1 3 80 17 9837939 9838170 GTATTTGGGACACAGCAGG 59 9838213 9838232 AGACAATTGCAGCTTTAGCA 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000083701 3 1 5 125 14 71576895 71579449 GTCTTGGCTTTGAAGGTCG 59 71579538 71579556 TTTGTTACAGCAACGGCAC 60 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000091488 1 1 2 80 6 55677884 55685480 TTGAAATCGGTTCTGATCCCA 60 55685521 55685540 ATTCAACATCCACAAAGCCC 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000079571 1 1 3 90 4 27593760 27593778 GTCATTGCAAGAGTCTGGG 59 27593832 27594159 TTCTGTGGTTGCTATGGCT 59 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000080303 3 1 2 93 5 90971982 90975848 AGTCAATTCAAACGTGAAGTCC 60 90975899 90975920 GCTGTAGTACCGAGTATTTCGA 60 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 2 2 2 92 17 9836506 9837060 CCCTATAGCAAACATGTCTTAACC 60 9836437 9836455 GGTCTTGGTCAGGAGTCTC 59 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 3 2 2 80 1 57719640 57719662 GGACATGAGGGTTTAGAATTGAG 59 57719699 57720759 ACTATTTCCTTTGCACCAAGAG 59 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000019358 3 1 2 80 1 57753900 57753920 CCTACTCCTCATTTAGCAACG 59 57753956 57755156 CTCTGTCACTATAGTACCTACTGTC 60 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 1 2 2 105 19 10131817 10136921 CACCAAAGATGATTTCAACGAG 58 10131507 10131525 CTTGTGACAGAGCTTCTGG 58 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 3 2 2 82 5 150467972 150470107 AAACAACCAGGTATTGACCA 57 150470152 150470170 CCACATCTTCATCCAGCTG 58 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118 3 1 2 82 4 27247453 27247471 GGAAGAGGAACGAGAGCTG 60 27244946 27247408 CCTGTAGAAATTGCTGCTCC 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000083458 1 3 5 80 10 56196352 56197213 TTTCACCCTTAAGATCCGTG 58 56197256 56197274 CGGGCATCCTTTAATTCCA 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 3 2 5 89 10 56195686 56195704 AGTACATGTGCAACAGCTC 58 56195757 56196086 GAAGATTCCCACTGGAGTC 57 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000091209 2 1 3 104 19 62146838 62146857 AGTTCACAGTGATGATGGAG 57 62142132 62146773 ACATCATCACCAACAGATACG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053 3 2 3 80 19 62104070 62104756 ACTGGAGGAGATAAGTAAAGACC 59 62104012 62104032 TGTGTAATGCCCAATTTGACG 60 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377 1 1 2 80 4 62260104 62260122 GGAAAGGGAGTTAAAGGGC 58 62260163 62265583 ATCTTTGATCTCTTCCCTTCTG 58 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000045647 1 1 2 60 7 130546890 130546909 CCTGAAGGCAAGATTGACAC 59 130547602 130547620 TGTCTCTGCACATGAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 1 2 2 80 5 63097219 63097237 CCTTTCATTTCAGAGGGCA 58 63097280 63099995 CAGTGGTAAACCTGATCCAG 58 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401 2 1 2 86 12 37519721 37527651 GGATCAAGCGACTGTTTAGC 59 37527700 37527718 CAAAGGACTCGTGGATGTG 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000060327 3 1 7 160 20 4091630 4091649 TACATCTACAACCGGGAGGA 60 4091820 4095062 ACCTTGGGTTCAACTGTCC 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 3 3 3 80 X 71184463 71184657 CCTGATAGGGTAAATGACATCG 59 71184698 71184716 TCCTAACCACTCTGCACTC 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 1 2 2 141 2 200619950 200625218 AGAGGAACTGTCCAAGCTG 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 3 2 2 143 2 200619951 200625220 AAAGAGGAACTGTCCAAGCT 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 3 2 2 143 2 200619951 200692121 AAAGAGGAACTGTCCAAGCT 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070 1 1 2 80 5 152629969 152629988 TGGACCCTTATGAAGGTCAG 59 152630031 152630970 GTGAACAAACAGACGCGAG 60 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738 2 1 2 122 12 39599332 39599350 GATCACACCGCTGAATCTG 59 39599435 39602542 TACTCCAGTATTGCAGGCTC 59 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738 3 1 2 122 12 39599332 39599350 GATCACACCGCTGAATCTG 59 39599436 39602542 TACTCCAGTATTGCAGGCT 58 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653 1 1 2 80 1 217789475 217789494 AACGGAAGCAGATGAGACTC 60 217786776 217787353 TGGGATGATCCTTGACAGC 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 2 1 18 61 1 43475881 43475902 AAACTTCCTGGTCATGTATGTG 59 43527510 43527528 AATGGAGCAGTTTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 2 2 2 80 1 19090232 19090255 AAGGACTCCTTACAATATCCTCAG 60 19090291 19092969 ACTGTGTAAACATTCTCCAGTG 59 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000085626 1 1 2 113 7 77158473 77158494 TTGTTCATGCACTCAGTGC 59 77158378 77158396 AATGGGAGACAGTCTGGTG 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660 1 1 2 80 9 17107083 17107101 CTGCAGAACAGCTACACAG 59 17107144 17108135 CTCAGCCTTCTTGATCAGTG 58 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000078392 3 1 2 193 X 15040726 15041146 CATGGGACCTGACAGTCTC 60 15042903 15043008 GAAACTGAAGCCATGTAGGAG 59 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 3 2 2 80 4 168616028 168616047 CAGTACTTGGAGGAGTTGGT 59 168616089 168618069 CCACTGCTTGTACATTTCCA 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680 3 1 2 80 11 86512838 86517375 AGAGGACAAACAGGACATCG 60 86517418 86517436 TTCTTGACTGACTTGCGGT 60 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000084765 1 1 2 81 11 7413952 7413970 AATCATTTGACGCACACGA 59 7416236 7417631 TGGGTTGTATAGAAGCTGGA 58 NA Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 1 2 2 80 2 93537550 93538048 ACCAGAATCAGAACATTGTCC 58 93538090 93538108 CACCCTTAGGATCTGTCCA 58 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 1 2 2 80 12 40520679 40520699 GTTTGCTAAAGTTGACCAAGG 58 40520741 40521525 TGTGCTTCCAGTACCTGAG 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289 2 1 2 102 X 15160285 15160522 AATTCAGCTGAACAAGACCC 59 15160587 15160605 CTGCATGACATGCATCAGG 59 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201 1 1 2 113 4 117264329 117267242 TATCTCAGTGTGGGAGGGA 59 117264234 117264252 CTGAAATGTGCAGAAGGGC 60 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000084825 2 1 3 266 2 124149565 124149583 GTTGTTCTCGGCTTTGCTC 60 124134790 124138860 CTGTGTCTCCAATATCTTCTCCA 60 NA DesignRelaxed Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000085535 1 1 3 91 16 49562101 49562121 CAGAAACTCGCTTATGGCC 59 49553512 49562045 GTAGTTCACATCCTGCGGT 60 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000080818 3 1 3 81 3 121832996 121833021 AGAATACAGTTTGGACCATCTG 58 121831716 121831735 TGTGCAGTTCTCATGAAGTG 59 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027 1 1 2 81 8 22988821 22988839 GGTTATGCTGGATACAGCC 58 22988461 22988564 GATCTCCCACTCCTTCCTC 59 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734 3 1 2 127 1 16822453 16827566 CATCTCACCATCAACAGCT 58 16827654 16827675 GGTCGATTTCACTTAATTGGTG 58 NA Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 3 2 2 86 5 59148107 59148201 CAGATCTGTAAAGAGGTGCAG 59 59148041 59148060 CACTCTGTAGTCATGGTGTG 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 1 3 6 85 9 17351566 17351584 ACGTGTAAATGTTCCTGCA 58 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637 2 1 6 83 9 17350344 17351514 TAAATCCTGGAGCGTTCAC 58 17351561 17351579 GAACATTTACACGTCTGCG 57 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 3 2 2 80 1 91883215 91883233 ACTCTTTCTCAAGCAACGG 58 91883276 91884983 GAAGCGATGTGCTTAAACAG 58 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 1 3 3 101 3 22947757 22947775 AACTTGGAGCTCCACTCTC 59 22938849 22947695 ACCAATGTAACCTTGATACCTG 58 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 3 3 3 102 3 22947757 22947776 TAACTTGGAGCTCCACTCTC 59 22938849 22947695 ACCAATGTAACCTTGATACCTG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 2 3 5 98 20 5416878 5416898 TTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 1 2 4 81 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532950 120532968 CTCATCCCTCATGGAGCTC 59 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000064858 2 1 2 80 5 62241404 62259682 TATTACCCTCAAGACTCTGCA 58 62241344 62241362 TGTTCCTGAAAGGAGAAGC 57 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 1 2 2 83 1 79983401 79985157 ATTCAATGAAGAGCGGCTG 59 79985203 79985222 GAAGCAAGGAACAGACTCTC 58 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366 3 1 3 81 13 71107993 71108013 CTCCTTAACCAGAAGCATCTC 58 71108056 71112436 GCCTTTGTTCTGTTGTTGG 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895 3 2 3 91 11 20689133 20689152 TGCATCACCAGAAGAATGTG 59 20689205 20700764 CCATCTTTCAGGTAAGCTGC 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000084946,ENSRNOT00000089723 2 2 4 96 1 128226674 128226693 ATCTACGGGTTGTCATTCCC 60 128217305 128220785 ATCCTTTGGGCATTCAGCT 60 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 1 2 2 80 4 66107583 66107603 CAATCCACTACATGCGATCTC 59 66107643 66110847 CCAGGTATTCCCTGTTATCCA 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000016967 2 1 3 81 2 257472177 257472196 GCAGAATTGAGCAGGATCTG 59 257467330 257472133 GAGTCATCTCCTTCCTGCT 59 NA Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 1 1 1 90 16 27472196 27472214 TATTGCTGCCTACAGAGCT 59 27472108 27472126 TTTGTCCTCAGTCGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 1 2 3 80 17 21639929 21704866 ATAGGATTCCAGGAGTCCC 58 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 1 2 2 80 7 70565893 70565911 ACACCACAGCAGAAGTACC 60 70565952 70566350 CACTGTTGTCTTGATCTTCTCC 59 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 3 2 2 80 7 70564754 70565871 GGAGACTATGAAATGCTTGGA 58 70565913 70565931 GACTTCATGCAGTAGTCGT 57 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000015632 1 1 2 87 17 9320772 9320790 CAGACAGTACAACGGAGGG 60 9320841 9328653 ACAACTTGCAACTTCTGGC 59 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 2 2 2 80 13 73689589 73690393 TTTGAGGAAGGAGAAACCGA 59 73689528 73689546 GACAGAGTCCCTGGATCTG 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087 3 1 3 87 1 136739828 136841533 CCATTTAAAGGCCACAACCT 59 136739760 136739778 CTCTTTGACAAGGTCGGTC 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786 3 1 2 90 1 255564512 255582142 GTCTCCAGACTCGATCGTC 59 255582196 255582214 CCACTTCTCCAAGTTGCTG 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000085278 2 1 2 122 8 56499876 56499894 TAAATGAGGTCTGCAGGCA 59 56501942 56501962 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 1 1 1 99 9 24509680 24509699 TTGTCCAAGAAACTGTACCA 57 24506363 24506383 ACCATACTCTGGATAACTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649 1 1 2 80 6 147933885 147933903 AGCTATGAGCAAAGGAGGA 58 147933947 147937497 TGTCACTTCTTTCTCAGCC 57 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000074896 3 1 3 80 8 90629084 90629222 CTGAAGAGATCCACGTCTC 57 90629022 90629040 CCTTTACTGACAGTGTGCT 57 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675 1 1 2 80 6 147104400 147110363 GAAGCCTACAAGAAACTCATCTC 59 147104342 147104361 GGCAGTGATGTTGAAATGGA 59 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657 3 1 2 80 4 123614497 123614515 CGAGAAAGTTCGACTGGAG 58 123614558 123615219 CTCTGTATTCTCACTGCCTC 58 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 1 3 3 138 1 168946041 168952774 GAGAACTTCAGGCTCCTGG 60 168952876 168952894 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 1 2 2 80 16 84713281 84713586 GCAACTCACGAAATCTCTGG 59 84713220 84713238 TTAGGCTTGACGCAAAGGA 60 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 3 2 2 80 16 84850586 84850605 TGTTCCTAGCTTAGCACAGG 60 84842313 84850544 AGAGGACTGAGCTTACTGGA 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821 3 1 4 91 4 167483798 167483817 ACTATAGAGGTCGTCCTCCA 59 167483870 167483890 GATTCCTAGTCTTCGAGGCC 60 NA Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637 2 1 2 82 5 149982076 149987672 TATGCCTAGCAGATCTGGC 59 149982012 149982030 CATCATACTGAGCCTGGCT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839 1 1 4 80 1 139898179 139943413 TACTGATTACTACAGGGTGGGA 60 139898120 139898139 AACTTCCGGTACATGATGCT 60 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839 2 1 4 80 1 139898180 139943414 GTACTGATTACTACAGGGTGGG 60 139898121 139898139 ACTTCCGGTACATGATGCT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000045165 3 1 4 83 1 139943443 139943464 CAACCTTCTAGTGAAGATTGGA 58 139903195 139943400 CCAGATGGATTAAAGAGCCT 57 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000015067 2 1 2 80 2 140322593 140324476 AAGAAGTCCCGAGTTTATCCA 59 140322533 140322551 GACTCCTCTGTTGACACCT 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000081903,ENSRNOT00000078412 1 2 4 80 20 12861793 12861811 CACAGAAGAACAACGTGTG 57 12861335 12861749 GGTTGAGGAGTCCATACAC 57 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000084875 3 1 3 86 7 107190048 107193547 GCCCAAGATAAGTTAAGCGAG 59 107189785 107189804 TTCACATTCAGGACCTTCCC 60 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029 3 1 2 90 1 83049933 83049952 GGACTTTATACCTGCCTCGT 59 83050005 83051251 GCTTTGGCAACTTCTCCAC 60 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000070958 3 1 2 88 13 84065448 84067600 GCTCTATAACCAGAGGAGGA 58 84068342 84068360 CAATCTCACTGTAGGCCTC 57 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000027271 3 1 2 82 5 137084514 137084534 TGGTTCAAAGACTTCCTTCCT 59 137076246 137084470 TCAATCTGCAATGCACCTG 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812 3 1 3 81 19 15210626 15210705 TGACCATCTTTGGAGAATCTG 58 15212174 15212192 CTGTGGAAGAGGTTCTTGG 58 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 3 2 3 107 3 48295247 48295265 TCAGATCTCCAAAGCCCTG 59 48293660 48293682 GAATAGATGTGCTGGTGGC 59 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157 1 1 2 80 1 204267369 204267387 CCAAGACTTCATCCATGCC 59 204254846 204267326 TCTGAGTACAACCTCTCCAC 59 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000058689 1 1 2 117 13 84591837 84598177 TACACCAGCATAGATTTCAGC 58 84598255 84598274 GTAGGAAGCATCATGGTGTG 59 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 2 2 2 82 9 19126819 19134319 TGTGGTCAAGATTGTGGCT 60 19126755 19126773 CATTCTTGAGGTACCGCCA 60 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000082462 1 1 2 80 12 38514411 38516437 CAACAACTGGCCTCTTCTC 59 38514349 38514368 CTGAGACCCAGTATCATGCT 59 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 3 3 3 124 5 2051971 2054771 AACACAATGGATGGAGAGG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481 2 1 2 81 5 5292457 5295800 AGGAACAGAGAATGGTGTG 57 5295842 5295863 TTAGGAAGACTTCTCTTTCCTG 57 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 2 3 3 82 19 15419658 15421200 TTTCTTCAAAGGAGTGGGC 58 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000022285 1 1 3 85 19 15396486 15396505 CAAATTCTTCAGCATACGGG 57 15392032 15395818 CTAGAGCCAATAGGTGGTG 57 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000047540 1 1 2 80 1 83112850 83112871 GAGACTTCATCGACACTTACCT 60 83112916 83113348 GGTGGTTCGACTTCTCCTC 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000047540 2 1 2 81 1 83112847 83112865 CACGAGACTTCATCGACAC 58 83112914 83113346 TGGTTCGACTTCTCCTCTC 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593 1 1 2 104 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001088 88002684 GTGGTCAATGTTCACCTCG 59 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336 3 1 2 81 7 18435866 18436221 GGACTGGTCTGAGTGTACC 59 18436266 18436284 GGATCGTTGATCTGCACTC 58 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000081925 2 1 2 80 5 136704357 136704376 GAAGAAGGCAATGGAACAGG 59 136704219 136704315 CTCAAAGACTTCTGCCTGTG 59 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 2 2 2 80 1 279649157 279649177 TGGAAGAAGATATCAAGCTGG 58 279649217 279658851 ATTCCATTGACTTCATCTCCC 58 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550 1 1 2 80 8 116373052 116373070 TCACGGCCATCATCTTCTG 60 116372904 116373009 CATGCATGCGATTCATCTCC 60 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 3 2 3 80 10 87345943 87345965 GACAGAAATATGAAATCCTGGCC 60 87345693 87345905 TCTCCAGAGTTTGAGTCTGTC 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 3 2 2 85 7 15072675 15072694 GGAAACAAACAGGAACACCA 59 15071205 15071226 CAGAGTTTCTCCAACAACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000066244 2 1 2 121 7 117667102 117667202 CCTCTCCGAAGAGAACAGC 60 117666922 117666940 CAAAGGTTGTCACCACCTG 59 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796 1 1 2 80 7 117667237 117667257 ATAGCATGCTCAACATTGGAC 59 117667101 117667196 GGCTGTTCTGAAACTCTTCG 59 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796 3 1 2 80 7 117667239 117667259 TGATAGCATGCTCAACATTGG 59 117667103 117667199 CTGTTCTGAAACTCTTCGGAG 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 1 2 2 80 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493105 14493126 AAGATGTGTTGAGATGGATCCA 60 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 1 2 2 80 2 206288317 206291580 TAAAGATTGGCCTCTATAGTCTAGG 59 206288261 206288279 TCAATACCACCCAGGTCTG 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 2 3 3 89 12 37880288 37881532 GCTGATAACAGACATCATCGAC 59 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000091084 1 1 3 123 12 37897742 37898575 GACATCGGAGAAGTTGCTG 59 37898662 37898680 AGTAGCTGGCATGGAAGAG 59 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000066777 2 1 2 81 3 2036932 2036950 CTGCATTTCCCACTGAGGA 60 2030851 2036891 CTAGATTCAGAACTCTTTGCAGC 60 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 3 2 2 83 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764994 93766522 TATTCACTGCACTTTCCACC 58 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928 2 1 2 82 9 40972108 40972126 TAGTGAGGAGCTTCTTGGA 57 40972171 40975096 CTTAATGTCGCTGAACTCAC 57 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000015718 3 1 2 81 19 17024137 17115064 GGGAAGCTAAGAAACTGAGG 58 17024075 17024094 TAGAACTCGTCATCTTTGGG 57 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 1 3 3 80 12 39866829 39867599 GCTGTCATGGAGGTTTATCAC 59 39866769 39866789 GATCTGGTACATCAGTTGGTC 58 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 2 3 3 80 12 39866826 39867596 GTCATGGAGGTTTATCACCAG 59 39866766 39866787 CTTGATCTGGTACATCAGTTGG 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000066114 1 1 2 94 3 119699288 119718061 TTGCAGAGCTGGATACAGAG 60 119718118 119718136 AACCTCAGAACCACTGACG 60 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 3 2 2 94 13 89300246 89300761 CTGTCCAAGAGTTGTTCGC 59 89300170 89300188 CTTTGTCTCACAGCTCAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 3 8 10 80 10 87128342 87128362 ATTACAATCCCAAAGCCTCCA 60 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 2 2 2 80 11 31654115 31654135 CAAGGTGACAGCTATGTTCTG 59 31654175 31656847 TGAATAGACAGGGATCCACTG 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000051687 2 1 2 92 4 70968293 70968311 GAAGTCCCTGGAACTTGTG 58 70965709 70968238 TCTAGAATCTGACGAGCCAC 59 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 3 2 2 80 7 136704177 136704197 CTACTTTGAGGGAGAAAGGAG 58 136700860 136704135 TTCATGGTCTGATCCTTGC 58 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 1 2 2 80 7 55149591 55149611 TGTAACAGTACCCAGAGTGAC 59 55149650 55151645 GTCACCTGATAACACTGATCTG 59 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187 1 1 2 80 19 22061652 22065530 CATGGGAAACAGGTAACCCT 60 22061591 22061615 CTTAATCACTCTTGGAGATAGTGGA 60 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157 1 1 2 80 9 38344794 38345760 AATCATAGGAGTAACGAAGCAG 58 38345798 38345819 TATTGAGCTTCTGTCCATATCC 58 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 2 2 2 94 7 2850630 2850648 CTGAAGGCGTATATGCGAG 58 2850705 2851373 TTCACCCACTCAAGGATCTC 59 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 2 2 2 80 1 205911981 205922918 CATTTACACAGGCTACGCA 58 205922960 205922980 GTGACTTTCAGTCGAAATCTG 57 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000086340 3 1 2 81 9 113306783 113306801 AGCAGTACAGTTGCAACAC 59 113303110 113306738 CCATGTCGTTCTGCTTCAC 59 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929 3 1 2 158 14 82787875 82787893 TCAACAAGGACCACCTGAC 60 82788438 82788536 AGGCTTGACAGTCTTCCAC 60 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 1 2 2 84 9 15610530 15610548 CTTTGGCCTCAAGAACCTG 59 15610594 15618404 ATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 2 3 5 81 X 159169771 159169790 GTATTACTGCGTGGATTGCT 59 159169833 159171039 TTTACCAAACCCAGTGATGG 58 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 2 1 1 88 8 55037823 55037841 CAGAAGGCACAGTTCACTG 59 55038787 55038805 GAGTCTAGCCGACTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 3 3 3 85 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583917 100584968 GGTACATGAAACACCTGAGTG 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 1 3 3 80 7 61198290 61199938 TAATGACGAAGATGCAGACAG 58 61199980 61199998 GCTAAAGTCTGGAAAGCCT 58 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 2 2 2 81 8 44063195 44063508 GGAAAGTGAGGTTCCAGTG 58 44063552 44063571 GAGAAGAGCAACCATCTCTG 58 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 3 1 1 118 7 144648410 144648428 CCCATAGTCTACCCTTGGA 58 144648985 144649003 TCTAATTCCAGGACCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 1 2 2 80 10 88160540 88160558 AAGAGCGAGATCTCTGAGC 59 88119258 88160496 GGATGCTTTCATGCTGAGC 60 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 2 3 3 80 8 78379468 78385825 CTTGGCATCTATTTATTCTCCTGAC 60 78379412 78379431 GGTGAAGGAGATCCTACTGG 59 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 1 2 2 80 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638389 93638408 TCACACTTAGCTGTAGGTGC 60 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316 3 1 2 81 10 93602135 93602153 CTGTATGAGCAGAGGTTCG 58 93594812 93602093 GTGGGTAATTTCTTGACATCCT 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 1 1 2 80 19 19784519 19784541 GAAGTATTCACAGGTGGAATTGG 60 19783619 19784481 ATCTTCCCTGGGATGTAACTG 59 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922 1 1 2 93 8 59420197 59458554 CAGAGCCCAAGGATACACC 60 59458611 59458629 GGTGCCTCCAAGTTTAGGT 60 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 2 2 4 82 3 152600424 152600442 AGGAAAGATGCACAGACCC 60 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348 1 1 2 80 19 22603082 22603100 TGGAAGAAACTGGCATCTG 58 22594182 22603038 CTGCTTCCTGTCTGAAGTG 58 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000080557 2 1 4 80 12 48143220 48143239 AAGACTACACCCAGATCAGC 59 48141393 48143178 CAACGATCATACCTGACTCG 58 NA Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 1 2 2 80 7 123409468 123412072 GATGATGCAAAGGTCAAGGA 58 123412112 123412133 ACATAAGAGAATTCGAGATCGG 58 NA Rattus norvegicus 81 Zfp335 ENSRNOG00000017290 ENSRNOT00000023521 3 1 1 80 3 161360364 161360382 ACGACACTCTCAAGGAAGC 60 161360224 161360320 CTGCAGTCAGCTCAATGTG 59 NA Rattus norvegicus 81 Rn60_10_0878.6 ENSRNOG00000051172 ENSRNOT00000076076 2 1 1 60 10 87936169 87936192 TACAGTCAGATCCTTAGAATCGAG 59 87936132 87936150 ACCTGTCAGCAAACTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325 2 1 2 84 1 68436600 68436939 CCACCAACAATCGACTTCAG 59 68436983 68437004 TTGGCTAAATCTACCACATCTG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 3 2 3 82 10 87953597 87953615 CTAAGTCTGAGAACGCCAG 58 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255 3 1 2 60 3 77153135 77153154 CTGCGTTTCTCACATTACAG 57 77196831 77196852 CATATACACAAATATGCAGGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000079684 3 1 5 82 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664245 28732702 ACCCACATAACCAGGACAC 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124 2 1 2 109 3 79728840 79729748 GTAACGCAGATAGTTGGCAG 59 79729815 79729838 CCGGTCTTTGAAAGTATAGTTCAC 60 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 3 2 3 81 14 83587895 83589636 CAAGTGAAAGAGGTCAACCG 59 83587833 83587851 TGATCTCCAAGATGCGGTC 60 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 1 2 3 80 14 83587893 83589633 GTGAAAGAGGTCAACCGGA 60 83587831 83587850 ATTGATCTCCAAGATGCGGT 60 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 3 3 3 83 12 46801169 46801917 CCATCTTGGATAAAGTGGTGAC 59 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541 1 2 3 80 20 49468467 49468717 TCTCAAACCTGAAGGTCCAC 60 49468406 49468425 GAGTAAAGCCCTTGTTGCAG 60 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061516,ENSRNOT00000061515,ENSRNOT00000084506 1 3 5 80 13 34489089 34489107 CCTCATCCTCAGGTTCCAC 60 34489150 34498754 TGCGGATTCTTGCTAATGAC 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 2 2 2 80 2 137325786 137325806 CAAATTATACGACCAGTGGCT 59 137325339 137325747 TCTAGAAGACTCTTCACTGCTG 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 3 2 2 80 2 137325786 137325805 AAATTATACGACCAGTGGCT 57 137325338 137325745 TTCTAGAAGACTCTTCACTGC 57 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944 1 2 5 103 10 89174754 89174995 CTTCTTTACGTTACAGCCGA 58 89175061 89175079 TCATGCTGGACTGTTTGTG 58 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152 3 1 2 85 1 71677460 71677479 AATAAGATCGAAGACGCTGG 58 71675863 71677413 GCCTCCAACCCAATATTCTC 58 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945 1 1 2 80 5 150872779 150872799 TGTTCTTACCTGCACTACAGG 60 150872841 150880364 GTGCTTGAAGCTGGAATGG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000086524 2 1 5 142 8 99636752 99637846 CATGTACATGGACCACCAG 58 99637952 99637970 CCTGGATAGGGACCTTGAG 59 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618 2 1 2 80 8 109288095 109288114 CTGCAGTGTTCCCATTACTC 59 109288155 109302686 CACCAACAAATCCTCTTTGGA 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000019673 1 1 4 96 9 46997835 47012473 CCATCCTGGAGAATATGAAAGTG 59 47022724 47022743 TCATTTGGATACTCCGTGCA 60 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000019673 3 1 4 98 9 46997835 47012473 CCATCCTGGAGAATATGAAAGTG 59 47022726 47022745 CCTCATTTGGATACTCCGTG 58 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000000824 1 1 2 80 12 50288802 50292760 ATTGAGGAGGTGTACCACAG 59 50288741 50288759 CTCATCTCTGGGCAGTGTC 60 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000022861 2 1 2 81 3 157040376 157049630 AGAAGAAAGAGAAGCAGTTGTC 59 157040316 157040337 TTGTAGTCAAAGTTAACGGAGG 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 3 2 2 138 1 80606778 80609216 GATCAAGACTCGGAACTGGT 60 80606659 80606678 TATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 1 3 3 80 1 219856717 219857179 GTGGTCTTCAAGTTCTGTGAG 59 219857221 219857239 TGGCAGGTAGTTAAGGGAG 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000013991 1 1 7 81 16 64053058 64053077 CTCGTGATAACAGCTTCCTC 58 64053118 64055284 AGGTTATGTCTTTCGCTATGAG 58 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000008838 3 1 3 115 8 26431686 26434072 ACAACCGAAGAACCTTGAG 58 26434149 26447686 GTCCAGATTCACCTACTACCA 59 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078 3 1 2 80 14 84632594 84632612 ACGGCACTACTGAGATAGC 59 84577681 84632552 TCATTCTTTGAACTTGGCTGC 60 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616 3 1 2 95 7 97967522 97994357 GAGATGTCAGCAGTGAGGA 59 97967445 97967464 ATATGAAGACAGCGTAGCAC 58 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 2 2 2 80 16 32457628 32457646 AGCAGGTGCTATTATGGAC 57 32457688 32490247 GTATAATGAGTTCCAGCTGCT 58 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 1 2 2 60 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794546 117794564 AACCACGGTAGTAGTTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463 3 1 3 82 9 51524009 51536198 ATTGGATGAGATGCAGGAGG 60 51536243 51536261 ACCTGCTGTCTAATGGGTC 59 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000027617 2 1 2 83 2 211460440 211460458 ACGATGACTGGATTGACCC 60 211460505 211467932 CACAATCATCAACCTGCGA 59 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000050275 1 1 2 88 9 52698706 52698724 AGTTCACATGTGTAGCCTG 58 52698775 52705927 CTGTTATCTTGACCAGAGGC 58 NA Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231 3 1 2 168 12 48284179 48316498 CCGAGGCAGATACAAAGTC 58 48283099 48283117 GGAGTTCATGAAGCAGGTG 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654 3 1 3 91 7 66740020 66743115 GCACAGAGATATAGACCCTCC 59 66743167 66743186 TATATGCGTCTTTCGCACAG 59 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 1 3 3 80 8 22532320 22532339 AATACGGGATGTGGAGAAGG 59 22532381 22534332 TTGTAGACGTTCCTCTGCTC 60 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574 1 1 2 165 1 6853884 6903198 AGATGAACACAACGATGTACAG 59 6841163 6842054 TTCCTTTGGCAATGATGTTCC 60 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 1 3 3 80 10 82240889 82240907 TGTCACAGTGGAAGAACCT 59 82240434 82240850 GTCAATGAGTCTAGAAATACCGTG 59 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000005665 1 1 2 80 10 98385243 98388604 GATTCCTTGGTTGGGACCA 60 98385181 98385202 AAGATTCTTGCACAATAAGGCC 60 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000043518 1 1 4 80 8 39209331 39209352 AAAGACTTTGAGCTTGATGTCC 59 39207907 39209295 CAGGTCCTTTACCTTGTATATCCT 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 3 2 4 80 14 84287260 84287355 TGACCAAGATCAACTACGGG 60 84287397 84287416 CATTGTGCTCATACTGTGGC 60 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000038898 2 1 2 81 1 73396101 73397156 TGAAGATGCTCAAAGAGATGC 59 73396040 73396061 CTTCTGGTGGAGTCTATCTCTG 60 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826 2 1 2 81 2 45230143 45231286 CAAATACAGGAGCCTCTGTC 58 45231329 45231348 TGAAGTAAGAGGTTGGAAGC 58 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826 3 1 2 81 2 45230142 45231284 GCAAATACAGGAGCCTCTG 58 45231328 45231347 GAAGTAAGAGGTTGGAAGCA 58 NA Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 2 2 2 81 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422287 126422308 GAGCTCTACTTCTTTACACTGC 59 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 1 1 1 60 1 220323966 220323985 CGGCAGTATGGTTTCAATCG 60 220324250 220324269 AATTAAACCCTGCCATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 3 2 2 80 8 61811584 61811807 GGTAGAAATGGATGGGAACC 58 61811848 61811868 TCTTGCAGAAAGAAGTTCTGG 59 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083 1 1 2 80 5 78140668 78140686 AGGAACTGGACAGACTTCG 59 78139694 78140624 CAAGAGATAGCTGCTCTGC 58 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 1 2 2 80 3 82943526 82958037 CTTTCCATTTGCAAGGTGAC 58 82936628 82936648 AGAGGAGATGTTGAGAATCAC 57 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997 3 1 2 80 3 2717679 2717698 TAGACAGGTTCATCTGCCTG 59 2716630 2717640 GTAACCAGTCAGTTAAATCAGGG 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 1 1 1 60 2 52171451 52171469 TCTTCCTCCACAAATTGGC 58 52171287 52171305 TTGAGGAAATGCTCTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 2 3 8 80 20 4482893 4482913 ACAAATTCTTCCTCTATGGCC 58 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152 3 2 8 82 20 4485778 4485797 TTCTTCCGAGTAGACTCAGC 59 4485842 4485932 TAGCTCATAGAGTCACCCG 58 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 1 2 2 80 3 161805480 161805498 CCATTGACACCATGTTCCA 58 161803063 161805437 AATGGAGACCTTCGAATACG 58 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000055839 3 1 2 111 5 159569695 159574310 ATCAATGAGAGGGACACAGAG 59 159569519 159569537 CTCTCAGCATGTCGTTCAC 59 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114 3 1 2 107 5 159576136 159576566 GTGATCCAGACACTGGAGAG 60 159576048 159576066 AACACAGACAGGTAGGCTG 59 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566 1 1 2 86 5 61704744 61704762 AAGAGCAGGAGTCTGTGTC 59 61704272 61704696 CAGTGGGTCTGACAAATACAC 59 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000048858 2 1 3 181 20 155208 155226 ACACCAACATGGGAATCGA 59 154673 154694 GGACACATCAGAGCTGGAG 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 1 2 2 80 5 156092954 156094660 CTAGACACAAGCACTCCCA 59 156092892 156092911 CTAAGAGGTAGTCCACCCTG 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128 2 1 2 80 16 69067598 69067617 CTAAGTGTGAACCGAAACCA 58 69067659 69068383 GAGAAACTTCCAGTCTAGGC 58 NA Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 3 2 2 81 16 62026498 62056606 AAAGAATGCTTTGAACGGCA 59 62056650 62056668 CTTCGTGTTTGCCTTAGCA 59 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000064400 2 1 2 108 3 171774085 171780555 GCTGGACAAGAACGATTCC 59 171780699 171780720 TCTTCAAAGTTGAGAACGTCTC 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000087254 1 1 2 81 5 77154285 77156267 TGGAGTACCAAACTTGCCT 59 77156312 77156330 AACCAAAGCTACTTGGCCT 60 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 2 2 2 80 5 152090518 152090536 ATCCCTCCGAAGAGATCGA 60 152089768 152090477 TGTCGTCATACACATCTTTCAG 59 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 3 3 3 80 5 100496449 100502397 GTATCCAGAACACCCATAACC 58 100496389 100496410 GTCATGATAGTATGGTTGGCTG 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316 1 1 3 97 16 74801388 74802166 CAGGCTTCAGAGAATCAGGT 60 74802226 74802244 GGAACTGGGACCGTATCTC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026546 3 1 4 80 16 81674433 81674453 CCTGGATACTACCATCGACTG 60 81674495 81676858 TGTCCGGTTCAAGTCTGTC 60 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 2 1 1 267 3 171302444 171302462 AGCCACTACAAGCTGTCAG 60 171296060 171296078 CATCAGACAGCGAGATGGT 60 NA DesignNoJunction Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000084299 2 1 2 84 3 66836046 66836064 ATGTCCCTGATACTCCACG 59 66835978 66835998 CCTCCATAAGCATGGTCCA 59 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000088458 3 1 2 80 16 71147897 71150982 AAGAGATGTGAGAAAGGTGGA 59 71147837 71147856 GTCTATGCTCAGGCATTCTG 59 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 3 2 2 80 16 90325670 90332899 ATGGACCTCAGTGTTAGCA 58 90332940 90332961 GGTATAGATGAAGAGGCAAAGG 58 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 1 2 2 80 3 176761064 176762250 CATGCTCAGGAAGATCATGG 59 176761003 176761023 GTGCTTCGGCAAGTATTAGAG 59 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 3 1 1 64 3 150156784 150156802 CACTAAGTCAGAACCTGCA 57 150155808 150155829 ACATTGGTACTCACTAGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 2 3 3 91 16 69882210 69882228 CCGGAGACTGGTATTACCG 59 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000023352 1 1 4 80 16 81945076 81945094 AGAAATGAAGAGATGGCCC 57 81897667 81945033 CTGGTGCATGATTTCATCAG 57 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283 3 1 2 81 3 176454820 176455098 CGCTACATTGTGGTGTATGTG 60 176454759 176454777 CCACTTCCAGGTAGAAGCA 59 NA Rattus norvegicus 81 AY172581.21 ENSRNOG00000033545 ENSRNOT00000049396 1 1 1 60 MT 3807 3825 AGGGTGTATTGGTAGCACG 60 3765 3788 GACAATAGGAATTGAACCTACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052446 ENSRNOT00000078595 3 1 1 87 5 116944916 116944934 ACCCTGTGCATTCCTACAG 59 116944982 116945003 TTTCTATAACCTTGCTCTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058391 ENSRNOT00000087130 2 1 1 64 5 9975084 9975102 TCTGGCTGCATCATCTGTC 60 9975128 9975148 GGTAGCCAGTCAGATTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000053163 ENSRNOT00000086511 3 1 1 66 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490247 150490265 AAATTGTTTCTCTGGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055744 ENSRNOT00000092215 1 1 1 60 5 42395559 42395577 AGTGGTCTTCAGTCAAGGG 59 42395598 42395619 CTTGTTTGTAGGTTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 3 1 1 105 2 220647218 220647237 GGTCCAGGCATACTTTACCA 60 220645319 220645915 TTTGTCAGTGGCACATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052881 ENSRNOT00000080226 1 1 1 67 2 215196618 215196636 TACTGATATGGCTGCTGTG 57 215196569 215196587 CACAAGTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056961 ENSRNOT00000088344 2 1 1 61 2 76072844 76072864 CTCTCCATAGAATTCTGGGTG 58 76072803 76072824 AGTTGAGTTTCCCATATGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056329 ENSRNOT00000081950 3 1 1 65 2 131621068 131621087 GTGAGGTTACATTGTTCGCA 59 131621022 131621040 AATGGATGATCCTCAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106292.1 ENSRNOG00000052599 ENSRNOT00000071951 3 1 1 60 11 65644859 65644878 GCCTTGAACTCAGAGATCCA 60 65644818 65644836 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060810 ENSRNOT00000088888 1 1 1 60 5 140987510 140987530 TAGAGCAGAGGAAATCCAGAC 59 140987552 140987570 GAGTTGTAGAGACAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058231 ENSRNOT00000079482 2 1 1 60 8 57323397 57323417 AATGGTACAGAGAAGGTTAGC 58 57323438 57323457 TGCTTTAGGGATCTGTATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059871 ENSRNOT00000090973 2 1 1 60 8 35140985 35141005 CCTGAAAGCTTTGCATTTGTG 59 35141027 35141045 TCCTTTCTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055632 ENSRNOT00000085129 1 1 1 60 11 86179618 86179638 TCCATTCCTAGAGGCATTGAG 59 86179658 86179678 GTCAGAACACTGAGCATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060794 ENSRNOT00000077752 1 1 1 60 5 35315168 35315187 GCAGGACTTCATGTACAGAC 58 35315209 35315228 ACAATCATGTGTTGCTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000054737 ENSRNOT00000077341 3 1 1 66 8 96238795 96238817 ATGATGATCCTATCCCGAATCTG 60 96238751 96238769 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060236 ENSRNOT00000084672 1 1 1 62 5 21556664 21556683 TCCGAGGAGTGATTATTGCT 59 21556708 21556726 ACAGGGTTTGGTGTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061090 ENSRNOT00000086129 3 1 1 61 16 73531252 73531270 GTGTCACATGTGCACAGAG 59 73531294 73531313 ACACTGAGCATAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055926 ENSRNOT00000090491 2 1 1 60 X 29175800 29175818 GTGGCTGCAAACAGTATCC 59 29175839 29175860 CAAGTTCTCCTAGAGAAACCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ40 ENSRNOG00000057682 ENSRNOT00000079136 3 1 1 61 8 13870489 13870507 TGATGTTGTGATGATGGGC 58 13870531 13870550 AAGGCTACTTTCATTCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059078 ENSRNOT00000087164 1 1 1 60 2 84864736 84864756 CATATGTACATCAGCAGGTGG 59 84864696 84864716 GTCAGAACACTGAGCATTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026361.2 ENSRNOG00000054572 ENSRNOT00000089722 1 1 1 60 16 74072488 74072508 CTAGTATCGACTCCGCTAAGG 59 74072448 74072468 ACTGATTATGTTTGGCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025481.1 ENSRNOG00000050139 ENSRNOT00000073719 1 1 1 77 16 39029719 39029737 AGCAATGAATGCTTCAGGA 57 39029660 39029680 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054717 ENSRNOT00000082640 3 1 1 60 16 23437270 23437291 GTCAATAAGTGGCAAAGAGGAG 59 23437231 23437251 GATGTTCAAAGGTCCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059131 ENSRNOT00000080823 2 1 1 73 16 55208589 55208610 CGGTCAGCCACTATAATAAGGA 60 55208644 55208662 ATTTGCGTGTCGATCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054744 ENSRNOT00000087277 2 1 1 60 16 71162949 71162967 GATTTCAGGGCCATTGCAG 60 71162907 71162928 GATGGACCTACAGTTCTAGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052366 ENSRNOT00000080936 2 1 1 60 16 9834301 9834323 CTTAAAGCATTACTACCTCTGCC 59 9834263 9834281 TTGAAGCCAAGCATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053676 ENSRNOT00000084384 1 1 1 60 16 33976087 33976105 GAGAAGATTAGCATGGCCC 58 33976129 33976147 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000060031 ENSRNOT00000079563 3 1 1 60 1 101121188 101121211 GATGATGGTATATTCTCACGATGG 59 101121151 101121169 CAGCCTTTGGCATTATCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047325 ENSRNOT00000053460 2 1 1 60 1 264175856 264175875 CCTGAATACACCTGATCTCG 58 264175898 264175916 GTACTTACCAGGTCCAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061382 ENSRNOT00000089795 3 1 1 61 9 57996143 57996167 CGATATAGAGATGATAAGCATAGCC 59 57996185 57996204 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068306.1 ENSRNOG00000036543 ENSRNOT00000054650 1 1 1 60 9 97384950 97384971 ACTGTTAGGAATCGTAATGCAG 59 97384911 97384929 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.2 ENSRNOG00000051967 ENSRNOT00000082154 2 1 1 76 9 34389365 34389384 TAAATGTGATCGCTTCTCGG 58 34389308 34389332 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061400.2 ENSRNOG00000060373 ENSRNOT00000091705 1 1 1 80 4 121704319 121704337 CTATGCCACAGTCAGTCCT 59 121704381 121704402 GCTATTCTGTCAAACATTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000051831 ENSRNOT00000089050 1 1 1 60 1 11906541 11906559 GATGAAGAACGCAGCTAGC 59 11906499 11906518 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000051831 ENSRNOT00000089050 2 1 1 60 1 11906541 11906559 GATGAAGAACGCAGCTAGC 59 11906499 11906519 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054070 ENSRNOT00000083158 1 1 1 60 17 45678783 45678801 GTTGGTTTCAAGCAGGTCC 59 45678741 45678759 TTTCTGGAATGGCCAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054070 ENSRNOT00000083158 3 1 1 61 17 45678783 45678801 GTTGGTTTCAAGCAGGTCC 59 45678740 45678759 ATTTCTGGAATGGCCAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040918.1 ENSRNOG00000048586 ENSRNOT00000071600 2 1 1 64 X 114317452 114317470 CACTTTGTAGACCAGGCTG 58 114317498 114317516 TAGCACTCAGGAAGCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058743 ENSRNOT00000085721 2 1 1 60 X 74088799 74088819 ACACCTTAATGGTTGTGTTGC 60 74088840 74088859 CAAAGGACTGCAATCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056971 ENSRNOT00000078432 3 1 1 60 2 108115717 108115735 AGTTGGAATAGGAGCTTGC 58 108115675 108115693 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056481 ENSRNOT00000082581 3 1 1 78 X 59952368 59952386 GTGATCATTTCTGCAGCAC 57 59952427 59952446 ATGTCATCTTTGTGCAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051855 ENSRNOT00000087658 1 1 1 60 2 28652304 28652322 AGGTCATTTCAAAGAGGGC 58 28652262 28652282 TTTGGTCACAGAGTTAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.2 ENSRNOG00000049160 ENSRNOT00000070128 2 1 1 61 9 45847499 45847522 CTTGAGTAAGAACAACTTACCAGG 60 45847542 45847560 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052890 ENSRNOT00000089626 3 1 1 78 9 72452927 72452946 AATGAGATTTATCCGAGGCG 58 72452868 72452886 AAGTAGTTCCCTCAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060556 ENSRNOT00000078546 2 1 1 63 17 78955056 78955074 CTGAGGTGCGATTATTGCT 58 78955101 78955119 ATATGGCAAGTCCTCATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054171 ENSRNOT00000080225 2 1 1 76 9 3389411 3389431 TACCATGATCACTAAGGTGGT 58 3389355 3389373 GAAATTCCAGGGTCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098157.1 ENSRNOG00000048063 ENSRNOT00000071496 1 1 1 88 X 5528845 5528863 ATGAGACCCAGCTGTAAGG 59 5528915 5528933 AAGACTACCAGCTCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039950.1 ENSRNOG00000048605 ENSRNOT00000054663 3 1 1 77 X 88635287 88635305 TACAACCAGTGCAGACTGG 60 88635228 88635246 AGTCCTGCTTGAGAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042541.1 ENSRNOG00000047138 ENSRNOT00000071223 3 1 1 60 X 158969023 158969042 ACTTTGATAGGAAACCTGCC 58 158968982 158969000 TCGATATGAAGACCCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058895 ENSRNOT00000083704 1 1 1 60 17 12876657 12876676 GAGGCTATGTCTACACTCAG 57 12876696 12876717 TGTTAGGTCACTACTCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045032 ENSRNOT00000070299 3 1 1 60 9 26776879 26776899 CCAATCTTGTCTGATCTTGGA 58 26776839 26776860 TCTCCATACATGTTCTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057873 ENSRNOT00000082942 2 1 1 67 9 41623003 41623021 AATGCTCCTAGAGGCACTG 59 41623051 41623070 CTAGACTCTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000053998 ENSRNOT00000090733 1 1 1 60 X 63668873 63668891 ACTGACTCCTCTGTTTGCA 59 63668831 63668849 GTGCTTCTTATCACAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119111.1 ENSRNOG00000055667 ENSRNOT00000086031 2 1 1 80 1 254513152 254513176 ACTCCCAGAAGGAGAAATGG 59 254512205 254512225 AGAGGGAAGAATTGTCTTCGT 59 Novel Rattus norvegicus 81 uc_338 ENSRNOG00000059139 ENSRNOT00000088828 2 1 1 60 16 68391101 68391119 ACAGGTACAGCATAGGCAG 59 68391059 68391079 AGGTACATGGACAAGATGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA30 ENSRNOG00000053245 ENSRNOT00000090351 2 1 1 60 1 194727845 194727865 CTTGATTACATCCTTGCCCTG 59 194727887 194727905 TGTTCCCTTGAGTAACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030524.1 ENSRNOG00000028427 ENSRNOT00000033244 1 1 1 60 10 91753213 91753231 CAGTCAAAGGTTGTCCGTG 59 91753255 91753273 CCTGGGCTTGTATTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057559 ENSRNOT00000081018 3 1 1 60 16 56236983 56237003 GTGCATCATTAAGTGGCAGAG 60 56236943 56236962 GAATCCAAGCAGGTAACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 2 1 1 86 10 101989733 101989751 CTCCACTTCCTTCTCACCC 59 101989801 101989822 TTCAGTGTAGAGCTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC686748 ENSRNOG00000051847 ENSRNOT00000090997 1 1 1 60 8 18785985 18786004 GTCCCACAAATGCTAAATCC 57 18786026 18786045 AGCCTTCTTTCATGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058225 ENSRNOT00000087896 1 1 1 60 6 80726578 80726600 GGAACGATACAGAGAAGATTAGC 59 80726540 80726558 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056049 ENSRNOT00000077522 3 1 1 60 6 133824895 133824913 ATGATGAGATCTGGTGGCG 60 133824935 133824955 TCAGATGTCTGGATACTTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052816 ENSRNOT00000089669 2 1 1 60 10 20013167 20013185 GTCAGTAGATGGCAGAACG 58 20013207 20013227 GATGTTCACAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054927 ENSRNOT00000081233 3 1 1 60 10 28417743 28417761 TGGAGATGTTCCCATTCCT 58 28417785 28417803 GAGTGCACGACATTAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055600 ENSRNOT00000081857 3 1 1 62 X 27104678 27104696 AATTAGTTTGTCAGGGCCC 58 27104720 27104740 TAAATATGGAGTGCTCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2787.1 ENSRNOG00000046036 ENSRNOT00000081605 2 1 1 60 1 271255324 271255343 AGGTCATGAAGTGGTTCCAG 60 271255283 271255301 TATTTGTGGGAGATGCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050589 ENSRNOT00000073815 2 1 1 60 12 1512876 1512894 CCGATCTCGTCTGATCTCG 60 1512834 1512853 CTCCCATCCACGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000058917 ENSRNOT00000083897 1 1 1 60 6 89737416 89737437 GAAATGTAATAGGGCTTGCTCC 60 89737457 89737476 TCCAGGTACTGCAACATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044409 ENSRNOT00000069676 1 1 1 60 X 40233345 40233366 ATCAAGTCAGTACTAGGTTGGT 59 40233387 40233405 ACCCACTGAGTCTTCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040715 ENSRNOT00000062468 1 1 1 60 10 86231452 86231473 CTGATCTCAGAAACTAAGCAGG 59 86231413 86231433 CTCAGTTGTTCTACAATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 2 1 1 176 12 50212219 50212237 AAAGCAGCAGTGGAAAGAG 58 50212022 50212044 CACTTAGGATTGGCTTTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037203.1 ENSRNOG00000028611 ENSRNOT00000031767 2 1 1 60 X 15949960 15949978 GCAACAAAGCTACGGACAG 60 15949918 15949937 CTGTTGTCCATAACCCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060537 ENSRNOT00000079242 3 1 1 60 16 14643961 14643979 GTATGTCAACAGGTGGCAG 59 14643919 14643938 TCATCTTCAGAACACCAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000054533 ENSRNOT00000086318 3 1 1 61 1 225085011 225085030 CTCTCGGTGTTATGTCTTCG 58 225084969 225084987 GGCGTCTGAGGATAGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058703 ENSRNOT00000078465 2 1 1 60 X 14960963 14960982 CTGCAGTGCTTTAAGATGCT 59 14961005 14961023 CTGTCTGGGTTTCATGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003302.1 ENSRNOG00000058668 ENSRNOT00000090142 3 1 1 123 1 104052102 104052121 GGAAAGCTACAGGGATAGGG 59 104051998 104052016 GTTGTTAGCACAGGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054307 ENSRNOT00000088781 1 1 1 60 10 15748295 15748313 CTACTCTGGAGGCTGAGAC 59 15748253 15748272 CGCATTATAACCCGGAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053344 ENSRNOT00000088020 3 1 1 62 9 100115227 100115246 AGAAGATTAGCATGGTCCCT 58 100115184 100115203 GTTTCAATGGGATGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016418.1 ENSRNOG00000051014 ENSRNOT00000071355 1 1 1 105 14 99787847 99787866 TGTGAGGTGGAATCTCAGAG 59 99787759 99787779 ATTCTCAGCTGAGGGATCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055500 ENSRNOT00000078566 3 1 1 60 2 178614277 178614297 ATACAGAGAATGTTAGGCTGG 57 178614317 178614337 CAAACGCTCGAAGAATTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060064 ENSRNOT00000085502 1 1 1 71 16 6596661 6596679 GCTCACTTTCTCAGCACTG 59 6596608 6596626 ACGTCATCCTTGCATAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057348 ENSRNOT00000089741 1 1 1 60 16 18469851 18469872 CCCAAATTCGAGGATATTTGAC 58 18469893 18469911 AGATTGCAAATGCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053338 ENSRNOT00000086089 2 1 1 60 10 39414032 39414053 CAACCCATATGCTAAGATTGGA 58 39414073 39414092 GTATTCATCCTTGCTCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305178 ENSRNOG00000007532 ENSRNOT00000076713 2 1 1 81 3 9820040 9820058 GATCCTTTCCAAATGGCGA 58 9818935 9819995 CCTCTTCACTGACCTTGTC 58 Novel Rattus norvegicus 81 AABR07027753.1 ENSRNOG00000046334 ENSRNOT00000049182 2 1 1 83 17 43801956 43801974 TTCCTGGAGAACGTGATCG 60 43802021 43802039 GTAGACCACATCCATGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097700.1 ENSRNOG00000057454 ENSRNOT00000077145 2 1 1 60 8 53361866 53361886 AATGAAATGGAAACCTGGGTC 59 53361826 53361844 CAGCTTCCTCCTGATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059535 ENSRNOT00000083670 3 1 1 60 4 143869780 143869798 GAGACTGGTTTGGTCAGGA 59 143869817 143869840 AGAGTTAGTTAGGAGGTTCTAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072237.1 ENSRNOG00000054404 ENSRNOT00000090804 2 1 1 80 11 60254051 60256227 TGTGAGCAAGAATCAGAGTC 58 60256269 60256288 GATGGTAACGTTTCTTCCCA 58 Novel Rattus norvegicus 81 AABR07061801.1 ENSRNOG00000058067 ENSRNOT00000081967 3 1 1 60 4 144863394 144863415 CAACTTAGGTTTCTGGTGAGAG 59 144863355 144863373 GCAGACAATAGGATCCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014177.1 ENSRNOG00000039989 ENSRNOT00000047322 3 1 1 60 14 4539437 4539458 TGAGCCATCATGATTTCATCTC 59 4539478 4539497 GCCATGTAGCTTTGAATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000057393 ENSRNOT00000077365 2 1 1 66 1 194919182 194919201 AAACATTCCTTCGAAAGCTG 57 194919135 194919154 CTCAGTCACGATGATAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053947 ENSRNOT00000082728 2 1 1 61 9 85305501 85305519 TGTGTCTCATGAGCATCAG 57 85305458 85305482 CCTATATCAGAACACTGATATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061820 ENSRNOT00000090296 2 1 1 60 9 105888623 105888642 CTATGTCACATGGGCATCAG 59 105888582 105888601 GGTCAGAGGATAGACATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000053313 ENSRNOT00000083519 1 1 1 60 10 12933599 12933617 TTCAAGCAGACGCCTAGAG 60 12933557 12933577 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054243 ENSRNOT00000090974 2 1 1 60 10 13397051 13397069 TCACAGGCGTATCAGTAGG 59 13397009 13397030 CGGATGTTCAGTGAACATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030183.1 ENSRNOG00000050745 ENSRNOT00000073297 1 1 1 60 10 74402124 74402144 CCTGCCTATCCTAGTATTCCA 58 74402163 74402184 AGAGGATTGCCATGAGTTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030183.1 ENSRNOG00000050745 ENSRNOT00000073297 2 1 1 60 10 74402123 74402144 TCCTGCCTATCCTAGTATTCCA 60 74402163 74402183 GAGGATTGCCATGAGTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061364 ENSRNOT00000086845 2 1 1 60 6 6221614 6221635 GAGAAAGAGAATTAGCATGTCC 57 6221575 6221594 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052308 ENSRNOT00000081764 1 1 1 60 12 528316 528337 GCTGAGTGAAACACAGATTACC 60 528277 528298 ACTTGGTGGATTTAGATGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057065 ENSRNOT00000082117 2 1 1 65 17 31913591 31913611 GTCAGTGCTGTATCACATGTG 59 31913546 31913564 ATACTGGGCAGACACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058514 ENSRNOT00000082646 1 1 1 60 17 60418371 60418389 CCTTTCTCCCTCACCACTC 59 60418329 60418348 GAAGTAAGTCCTCTTCGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059156 ENSRNOT00000084342 1 1 1 60 17 73492688 73492708 GCACATGTATGTCAATAGGCG 60 73492648 73492667 TCAGAACACTGAGTGGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059486 ENSRNOT00000088858 2 1 1 60 4 118170961 118170979 CTTCCTGTGGTTTGTTGGC 60 118171001 118171021 CCTTCCAGATGGAATAGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051566 ENSRNOT00000086936 1 1 1 60 17 13856927 13856945 GTCAGAAACGAAGCAGACC 59 13856885 13856903 GTTCACAGGTGTGATCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055593 ENSRNOT00000084110 2 1 1 60 4 37910233 37910251 AACTACTGGGTCACATGTG 57 37910274 37910293 GTCAGAGCACTGAGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056104 ENSRNOT00000084763 3 1 1 62 12 47549560 47549580 GAAGGGTAAAGGAATTCTCCA 57 47549518 47549536 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052648 ENSRNOT00000084681 1 1 1 60 12 49959579 49959599 TACAGAGAAGATTAGCATGCC 58 49959539 49959557 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058700 ENSRNOT00000080764 1 1 1 86 2 259883624 259883642 TCTCTAGAAGCACTGCAGG 59 259883687 259883710 CACTGAGTATGGATATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 1 1 1 60 18 40124213 40124233 CGAGGAAGGGATTCCTTCC 60 40124257 40124275 TTTGCCGCAGTATCTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC095852.3 ENSRNOG00000053319 ENSRNOT00000082057 1 1 1 64 3 153521617 153521638 AATACAGTACCGTACAGTACAG 57 153521661 153521681 GTATGGTACTGCACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.3 ENSRNOG00000053319 ENSRNOT00000082057 3 1 1 67 3 153521614 153521638 TACAATACAGTACCGTACAGTACAG 60 153521661 153521681 GTATGGTACTGCACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004437.1 ENSRNOG00000060573 ENSRNOT00000089410 1 1 1 75 1 142893755 142893773 CACATTCATGCATGCACAC 58 142893698 142893717 GAGTTTGTGAGTGCATTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141521.3 ENSRNOG00000055964 ENSRNOT00000089201 3 1 1 64 20 5690808 5690827 GAAAGACCTCCACAAACTCC 59 5689735 5689753 GTCACAGCTGGAGATCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053464 ENSRNOT00000083738 2 1 1 60 1 201879136 201879154 CCTGTCTCTAGAGGCACTG 59 201879178 201879196 CTCTGCCACCTATTGATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062799.2 ENSRNOG00000060463 ENSRNOT00000089272 2 1 1 110 6 9483844 9483862 TTCACGATGCTCCTATCGG 59 9483936 9491653 TCTCGTTAGGTTGCCAGTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000054952 ENSRNOT00000087377 2 1 1 60 10 32973038 32973060 GATGTCCTGATTCCTAAGATCTC 58 32973000 32973021 CTTCAACAATCTATGCAGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058734 ENSRNOT00000088369 2 1 1 60 3 151043622 151043641 CACCTTGCAGAGTAACTCTG 58 151043581 151043604 CTGACAAACCTAGACATAATCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054290 ENSRNOT00000088250 2 1 1 60 2 38358873 38358895 CGATACAGAGAAGATTAGCATGG 59 38358835 38358853 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041999 ENSRNOT00000063752 1 1 1 60 1 141753526 141753546 ATTTCCTCTAGTCTCGGAAGC 59 141753486 141753505 TTACTCCCATCTTTGGACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076385,ENSRNOT00000076888 1 2 2 143 13 77785099 77785117 AGTCACTTCAGACAGCACC 60 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029215.1 ENSRNOG00000045537 ENSRNOT00000073610 3 1 1 60 10 14957412 14957434 CTGCTCTACATAATGAGTTCCAG 59 14957374 14957394 TTCTTGAGACAGGGTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056155 ENSRNOT00000081932 1 1 1 60 2 68252027 68252047 ATAGAACCTCCAAACAAGCTC 58 68252066 68252087 CTCTCAAATCTAGAGCAACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056479 ENSRNOT00000085127 3 1 1 60 10 110408881 110408899 AGGGTAAAGGAAGTCTCCA 57 110408923 110408941 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028157.1 ENSRNOG00000054189 ENSRNOT00000077338 1 1 1 87 17 57907200 57907218 GAGCAGATGCCAAGTACAC 59 57907284 57907490 TATCGAGTGGGACTGTCAG 58 Novel Rattus norvegicus 81 AABR07028157.1 ENSRNOG00000054189 ENSRNOT00000077338 3 1 1 90 17 57907200 57907218 GAGCAGATGCCAAGTACAC 59 57907286 57907493 TTGTATCGAGTGGGACTGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053268 ENSRNOT00000088924 3 1 1 61 2 18273631 18273649 AGAGAAGATTAGCATGGCC 57 18273588 18273606 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119536.1 ENSRNOG00000046544 ENSRNOT00000073161 1 1 1 60 12 15974070 15974089 TGAACTCACAGAGATCTGCC 60 15974029 15974048 TAGCACATGCCTTTAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.3 ENSRNOG00000053143 ENSRNOT00000087227 1 1 1 80 7 142887901 142887920 TAGGAACATCGTTTCTTGGC 58 142887963 142890217 GGAGTCCTGGGATATCTGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000051435 ENSRNOT00000089285 1 1 1 60 14 81467275 81467293 GGGCAAGGTTTATCCTTCG 59 81467233 81467252 ATCATGCAGTCAAGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305207 ENSRNOG00000008242 ENSRNOT00000010881 1 1 1 80 7 143099698 143099718 GACTCTGAACAGACTCAACCA 60 143099760 143101303 TGTAGCTCACATGGCTGAC 60 Novel Rattus norvegicus 81 Mup4 ENSRNOG00000033130 ENSRNOT00000046760 3 1 1 91 5 77406765 77407478 TTTGTTGAGCATGACGGAG 59 77406692 77406713 CCGTTCTTGACATTAACAAGGT 59 Novel Rattus norvegicus 81 AABR07054119.1 ENSRNOG00000056902 ENSRNOT00000081089 3 1 1 60 3 142094380 142094401 TGGGTAAGGTCTAAGAATTTGC 59 142094419 142094440 ATAAGTAGCTTCAGCATCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000054885 ENSRNOT00000088414 1 1 1 60 14 17128418 17128436 AGCCTGAGTCTGATGAAGC 60 17128376 17128394 CTCTCCAACCCTTTGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000051585 ENSRNOT00000083071 3 1 1 62 12 30499745 30499763 CAGTGAACACCCAAGTGTG 59 30499701 30499723 AGACTTTACTCTAGCACAGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 2 1 1 74 4 101645799 101646199 CTAATGCTCTGGATCCAGGA 59 101646236 101646254 AATGGCAACCGACAAAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA50 ENSRNOG00000052898 ENSRNOT00000083117 1 1 1 60 14 21268222 21268240 TTTGCTGGAGCATAACTGG 58 21268180 21268200 GTAGCTAGCAGTTAAAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053175 ENSRNOT00000083252 1 1 1 60 17 47502225 47502243 GAGAAGATTAGCATGGCCC 58 47502267 47502285 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142138.1 ENSRNOG00000056579 ENSRNOT00000089509 2 1 1 68 3 9540857 9540876 TGGTTATTAAGGAGCATGGG 57 9540803 9540821 AAGACAGTGTGAGGAACGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013701.2 ENSRNOG00000058696 ENSRNOT00000080311 3 1 1 60 2 251534574 251534593 TTGGGTATAGCAGTAGCCTG 59 251534614 251534634 CCTTGTGGTTGGATAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060028 ENSRNOT00000078604 3 1 1 60 2 177737266 177737284 ACAGGAGTGCTACTGTGTC 59 177737307 177737326 ATCGTATCCCTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053798 ENSRNOT00000080982 1 1 1 60 17 31301764 31301784 TACCACACCACATACTTATCC 57 31301806 31301824 TTGACCAAAGACGATCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 1 1 1 70 19 44600184 44601291 GATGATGGAAGACTTTAAGAAGGAC 60 44600138 44600159 CTTGTTTACTTGTGTTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC094902.1 ENSRNOG00000053771 ENSRNOT00000082550 2 1 1 60 1 267652262 267652281 AGGTCATGAAGTGGTTCCAG 60 267652221 267652239 TATTTGTGGGAGATGCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.2 ENSRNOG00000052772 ENSRNOT00000090675 3 1 1 60 1 167956509 167956529 ATGAGCCCATGTATTACTTCC 58 167956551 167956569 GATATGGAGAGCCCAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034592.1 ENSRNOG00000051951 ENSRNOT00000085422 2 1 1 80 11 80310033 80310056 GAGATTTCACCTCACATGCG 59 80310098 80310117 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000056379 ENSRNOT00000088057 2 1 1 60 12 52411657 52411675 GTCGTAAACAGCAACCTCC 59 52411615 52411635 TCCCTTAGGACAACCATACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013065.1 ENSRNOG00000055846 ENSRNOT00000078914 1 1 1 80 2 220833132 220833150 ACATGGCAGTCTTGTACGT 59 220817242 220833088 AAATTCAATGCAGGCCCAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052117 ENSRNOT00000086797 2 1 1 67 2 75154174 75154192 CTTATCCATTGCACTCCGG 58 75154223 75154241 TATGCAGTCCAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051718.1 ENSRNOG00000052047 ENSRNOT00000088887 1 1 1 60 3 20050463 20050481 GGTTACCCAGTCTCCAACC 60 20050421 20050439 GCAAGTGAGTGTGACTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072546.1 ENSRNOG00000045578 ENSRNOT00000074537 2 1 1 80 17 29863005 29863028 GAGATTTCACCTCACATGCG 59 29862944 29862963 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 LOC100362999 ENSRNOG00000004239 ENSRNOT00000005614 2 1 1 60 6 59300462 59300480 TGAAATCCTCAGTGACCCA 58 59300418 59300437 GAAAGCCACCATGACTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076322 2 1 2 80 X 70456913 70456931 TGGAACTTGCTGTGTAGAC 57 70446741 70456871 AGTCTCAGACACTTTAATCCC 57 Novel Rattus norvegicus 81 AABR07060632.1 ENSRNOG00000056865 ENSRNOT00000008357 3 1 1 93 4 87404352 87404370 ATAGCATCAGCCACCTGAG 59 87404428 87404447 AAATCCACCCAGTACATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058596 ENSRNOT00000085604 3 1 1 76 17 1818384 1818402 TGCTCACTTTGACAACACG 59 1818326 1818344 TATATGCCAACCTTGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052068 ENSRNOT00000081871 2 1 1 61 1 176645963 176645981 GAGAAGATTAGCATGGCCC 58 176646006 176646024 AAATGTGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563091 ENSRNOG00000052444 ENSRNOT00000084021 3 1 1 60 4 28306422 28306441 ATGAAGGGAAAGAAAGCGTG 59 28306381 28306402 GCTATGTTGTAAGTGTCATACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048135 ENSRNOT00000053353 3 1 1 60 1 264649158 264649176 TTGGAAGCTAAGCAGGGTC 60 264649200 264649218 GATATTCCCAGGCGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066142.1 ENSRNOG00000057009 ENSRNOT00000079166 1 1 1 80 9 3897601 3897880 TTCATGTTCTTGACTGGCC 58 3897921 3897942 TCTTCACAAGACTTAACCAGTC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041974 ENSRNOT00000063727 2 1 1 60 1 249644137 249644155 CCTGAATGTGCCTGATCTC 58 249644095 249644115 GTACTAAACAGACCTGACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041974 ENSRNOT00000063727 3 1 1 60 1 249644132 249644152 GAATGTGCCTGATCTCATCTG 59 249644092 249644113 CAAGTACTAAACAGACCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044605 ENSRNOT00000069872 1 1 1 60 1 161836587 161836607 CCTGCTTATTACTTGGATGGG 59 161836547 161836565 TGCTGAGATTCCAATGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056100 ENSRNOT00000081079 3 1 1 90 2 124592192 124592210 CCTTAGAGGCATTGCAGGT 60 124592120 124592138 ACACTGAGCAGAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055881 ENSRNOT00000091833 1 1 1 60 1 115334030 115334048 TTGATGGCAAAGAGGAGAC 58 115334068 115334090 CAGAAGTTCATAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049159 ENSRNOT00000070837 3 1 1 60 1 262651449 262651467 TGAACATGCCAGATCTCAG 57 262651407 262651428 TCTCCTATCCAAGTTCTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056048 ENSRNOT00000086645 3 1 1 60 14 107917858 107917876 TGCTGTGTCACATGAGAGG 60 107917816 107917837 GTGTTCTTAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059083 ENSRNOT00000086713 2 1 1 60 1 238986050 238986068 CATGGGATCTCCAACTGCA 60 238986092 238986110 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015834.1 ENSRNOG00000048860 ENSRNOT00000075080 3 1 1 60 14 79200431 79200449 TTAGTGATCAAGGGTGGGA 58 79200473 79200491 CAAGACTATCAGCCCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056605 ENSRNOT00000085100 3 1 1 60 1 76129645 76129665 TGCTCCTAGAATCATTCCAGG 59 76129687 76129705 TTCTGCCCACTAGTGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD107 ENSRNOG00000058701 ENSRNOT00000081554 2 1 1 62 1 195072351 195072369 TGACATGGGACCTTGTCTG 59 195072307 195072328 GATTTCAGAGTCACTCTAAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053284 ENSRNOT00000092072 2 1 1 60 1 53584389 53584407 CTTACCCTGTCACAAGGGA 59 53584347 53584365 GAGAAACCATTGTCCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060908 ENSRNOT00000084992 1 1 1 64 2 243616762 243616781 GCTGACCCTTATGATTGTCC 59 243616808 243616826 AACACAGCCTTCCACTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060012 ENSRNOT00000083352 3 1 1 61 4 100600044 100600062 AAACACCGCCATGTTAAGC 60 100600085 100600105 CTGAAGAAGACTTGCTCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058905 ENSRNOT00000082661 1 1 1 60 4 177714458 177714478 GGAGGCTATGTCTACATTCAG 58 177714418 177714437 TGTCGGGCTATTAACATTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055118 ENSRNOT00000086485 2 1 1 60 2 188059525 188059545 AAGACTTTGCTGATACACTCC 58 188059567 188059585 TCTCCAATAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054062 ENSRNOT00000080968 2 1 1 88 2 248718723 248718746 CTGAAGCACATATACTAACACTGG 59 248718658 248718678 GGATCCCTTCACAAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052742 ENSRNOT00000084988 1 1 1 74 12 46863297 46863315 ATGAGGTTTATCCGAGGCG 60 46863241 46863259 ATATTGCAAGTCGTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051379 ENSRNOT00000085090 1 1 1 60 1 24333814 24333832 GAGAAGATTAGCATGGCCC 58 24333772 24333790 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053837.1 ENSRNOG00000054840 ENSRNOT00000077213 2 1 1 61 3 129857263 129857281 CTCGCCTGCATTTACTCTG 59 129857305 129857327 ATCTTATCCTCCGTGACCAC 59 Novel DesignRelaxed Rattus norvegicus 81 SCARNA1 ENSRNOG00000057829 ENSRNOT00000087842 2 1 1 60 5 151024591 151024615 GATACTAACCGAGCTATCTATATCC 58 151024555 151024576 ACTATCACAACATATCCAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061878 ENSRNOT00000084338 1 1 1 60 2 196541112 196541130 GAGAAGATTAGCATGGCCC 58 196541154 196541172 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.1 ENSRNOG00000054551 ENSRNOT00000083317 1 1 1 60 1 174133689 174133708 ATGTGAACTGAGGGAACCTG 60 174133731 174133749 TGAGGCAACAAGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059718 ENSRNOT00000081322 2 1 1 60 5 154482807 154482827 TAAAGTTGGGACAACACAGAG 58 154482847 154482867 TAACTCGTGAGTCTTGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067760.1 ENSRNOG00000051624 ENSRNOT00000082300 1 1 1 80 9 61692309 61694020 GAAAGGAAAGGGTGGAGAG 58 61694064 61694082 TTGGTGCCTCCATATTCTG 57 Novel Rattus norvegicus 81 AC099150.1 ENSRNOG00000052397 ENSRNOT00000078137 2 1 1 86 1 102924066 102924087 ATCTACTGCGTTGGAGTCTG 60 102924138 102924156 TGGCTCTATAAGCGTCTGC 60 Novel Rattus norvegicus 81 AABR07043279.1 ENSRNOG00000058517 ENSRNOT00000087468 3 1 1 81 19 26985605 26986794 CAAGAACAACAGGCCACAC 60 26986837 26986857 CAGAATTGACATGACCACCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000056835 ENSRNOT00000081846 2 1 1 60 Y 83950 83968 CGATCTCGTCTGATCTCGG 60 83908 83928 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058469 ENSRNOT00000087939 2 1 1 60 5 63700909 63700933 GATATAAGGATGATCAGAGTGTGAC 59 63700950 63700969 GCTGAAACAACCTTAGTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050257 ENSRNOT00000040529 3 1 1 84 1 103146044 103146173 GCCCATAATGAGACATGCAC 60 103146220 103146238 TAGCTTCCACCAGCTTAGC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057261 ENSRNOT00000080414 2 1 1 60 1 70101698 70101717 CACTATGCTGATCAGGTGTC 58 70101740 70101758 CAATCTCGGGAGATCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057890 ENSRNOT00000087419 3 1 1 79 1 27723226 27723244 ATGAGGTTTATCCGAGGCG 60 27723285 27723305 ATGATTATTGTCCAAGGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061229 ENSRNOT00000091415 2 1 1 60 14 19795421 19795439 TCACATGGGCATCAGTAGG 59 19795379 19795399 TCAGACCAGTGAGAATAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056412 ENSRNOT00000088035 1 1 1 60 6 20219781 20219801 CTCCCTTGTCAACACAAATCC 60 20219820 20219841 CAGGTGCAATGCTAATCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056749 ENSRNOT00000086163 2 1 1 60 14 82124655 82124675 TGAGCAAGATAATCTGGACTG 58 82124615 82124636 ATGGTATTCTGTTGTCCATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055725 ENSRNOT00000089684 3 1 1 60 6 12054024 12054047 GCAGGACATGTATTAGAAATGGAG 60 12053987 12054007 TTACGTGTTATCCTTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.1 ENSRNOG00000042410 ENSRNOT00000066076 3 1 1 60 19 30668847 30668865 CACAATCATCCGCTTGAGG 59 30668805 30668823 CAAGATTCTGGAGGGTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051642 ENSRNOT00000084378 2 1 1 60 14 55760094 55760114 GTGTCACAAGTTTCTCAGCAG 60 55760054 55760075 TAATGTTCAGCATAGACCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059914 ENSRNOT00000082418 2 1 1 60 5 76168181 76168200 CCCACTACAATACAGAGCCA 59 76168140 76168159 GAGGTAGAAGATGAGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0834.1 ENSRNOG00000051201 ENSRNOT00000076395 1 1 1 80 13 78500402 78500420 TGAGATGAAGTGCTGCTCC 60 78498742 78500358 CCATCCAGGGACTCATCAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000055235 ENSRNOT00000083133 3 1 1 60 1 40672899 40672918 CACTCAGGATTTGTTGACCC 59 40672938 40672959 CAAATTATGCAGTCGAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035175.1 ENSRNOG00000050533 ENSRNOT00000073242 1 1 1 60 12 5942237 5942256 CTGTCCTGGAACTCACTCTG 60 5942279 5942297 AGAGGCAGCCAAATCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053008 ENSRNOT00000091396 1 1 1 60 10 96050553 96050571 GCTCAGTCAAAGAGGACGA 60 96050511 96050529 ATACCCTTGACCGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 3 1 1 82 12 2262269 2262291 TTCTCCTTCCCAGGAAGGA 60 2262201 2262221 CTACCAAGAGCTTGAGGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032821.1 ENSRNOG00000013622 ENSRNOT00000018214 3 1 1 108 18 84444052 84444072 CATCCACAGACACTTGAAGAC 59 84443895 84443982 GATTGCAAGCTCAGCTGTG 60 Novel Rattus norvegicus 81 Rn60_20_0055.15 ENSRNOG00000056189 ENSRNOT00000092081 3 1 1 60 20 3307075 3307093 GTGAGGGAAGTAAGAGGGT 58 3306838 3306857 GAGACATCTTCAGACTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC108295.1 ENSRNOG00000059430 ENSRNOT00000083575 3 1 1 60 3 72403286 72403304 CACAACCTTCCCTTCTGTG 58 72403244 72403263 GTTAACTGGTAACTTGCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001573.1 ENSRNOG00000057484 ENSRNOT00000089989 1 1 1 88 1 53220440 53220459 TGGAACCCATGGAGATAGAG 58 53224600 53272856 ACCTTTGCCTTCTTCTGTG 58 Novel Rattus norvegicus 81 AABR07001573.1 ENSRNOG00000057484 ENSRNOT00000089989 3 1 1 90 1 53220440 53220459 TGGAACCCATGGAGATAGAG 58 53224602 53272858 TCACCTTTGCCTTCTTCTG 58 Novel Rattus norvegicus 81 SNORD62 ENSRNOG00000060627 ENSRNOT00000086225 3 1 1 60 3 11243827 11243848 GTTCCAATAGATCCTTCTGACC 58 11243869 11243887 CTGTCCTCTTCATCTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058537 ENSRNOT00000079906 2 1 1 60 12 16259366 16259387 CAATCAGAGAAGATTAGCATGG 57 16259407 16259426 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060965 ENSRNOT00000089380 3 1 1 60 1 194086846 194086867 ACACATGTATCAGTAGATGGCA 59 194086807 194086828 GATCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129004.1 ENSRNOG00000054543 ENSRNOT00000091916 1 1 1 80 1 168535647 168535667 TACCTTCTAGTGCCCACAG 58 168535585 168535603 GAAGAAACTCAGCACTCGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059397 ENSRNOT00000089397 2 1 1 64 3 20467476 20467497 CAGCACGTGTACTTAAATTGGA 59 20467433 20467452 TGTGTCATCCTTGAGTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.4 ENSRNOG00000059022 ENSRNOT00000089085 2 1 1 73 15 30785275 30785293 TTACTCCTAGGCCTTCACC 58 30785468 30785486 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000053557 ENSRNOT00000090085 1 1 1 60 10 72147987 72148008 AAAGATGACTATCCGTCCTCAC 60 72148029 72148047 TTGGATGAAACAGTGGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.1 ENSRNOG00000036425 ENSRNOT00000054537 1 1 1 60 2 144877155 144877178 CTGTTAAGAATAAGCTCCTCTTGG 59 144877197 144877215 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.1 ENSRNOG00000036425 ENSRNOT00000054537 3 1 1 61 2 144877155 144877178 CTGTTAAGAATAAGCTCCTCTTGG 59 144877198 144877216 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056143 ENSRNOT00000087396 3 1 1 60 3 105751224 105751242 TTTGCATCCCTACAGAAGC 58 105751265 105751284 TGTAGCCCAGAAAGATTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.1 ENSRNOG00000050664 ENSRNOT00000071183 2 1 1 60 3 153533142 153533160 GCCTTGAACTCAGAGATCC 58 153533184 153533202 GCTCACACCTTTAATCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD121A ENSRNOG00000053973 ENSRNOT00000082337 1 1 1 60 5 57552871 57552890 ACCCAGGAAACAATGATGTG 59 57552830 57552851 AAATTCCACATGGAACCATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057442 ENSRNOT00000085558 3 1 1 62 3 177169957 177169978 TCCATATACCAACATTGAACCG 59 177170001 177170019 GTGTCTTCCTTGCACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035641.1 ENSRNOG00000057141 ENSRNOT00000091323 1 1 1 102 12 20599582 20659186 CATTCATGCTCTCATTACTACCC 59 20599502 20599520 CAGTGAAGGAGTCCTCTGG 59 Novel Rattus norvegicus 81 AABR07041963.1 ENSRNOG00000026379 ENSRNOT00000037031 2 1 1 80 X 144318971 144318991 CTATTTCTCTGCAGCACACTC 59 144319031 144319053 ACAATGCACCTATGAAAGCTG 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000061635 ENSRNOT00000088200 3 1 1 60 1 110734993 110735011 TAGCTGTTGGTTTCAAGCA 58 110735032 110735053 AGAATAGCCAACAAACTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061783 ENSRNOT00000090741 3 1 1 60 2 61359592 61359610 TCACATGGGTGTCAGTAGG 59 61359550 61359569 TCAGAACACCGAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056055 ENSRNOT00000090419 1 1 1 60 5 120019123 120019144 ACACAGATTATTAGCATGGACC 58 120019162 120019183 CTGGAACACTTCACAAATATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 2 1 1 70 X 123024325 123025427 AGCCATGACTTCTGAAGGT 59 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 U5 ENSRNOG00000058970 ENSRNOT00000087158 1 1 1 60 13 111458196 111458216 AGATCGCATAAATCTTTCGCC 59 111458236 111458256 GACTCAGATTTGTTCCTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000058970 ENSRNOT00000087158 2 1 1 60 13 111458196 111458216 AGATCGCATAAATCTTTCGCC 59 111458235 111458256 GACTCAGATTTGTTCCTCTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053512 ENSRNOT00000080126 3 1 1 60 1 200218106 200218126 ACATGCTACAGTGATGAAGGA 59 200218066 200218088 ACTACTCAACCTCTACTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016883.1 ENSRNOG00000057354 ENSRNOT00000088531 2 1 1 61 15 3267471 3268314 CTGCATTCATATGAATGGACAC 58 3268541 3268561 AGCTTTCTCCATTCCTTTGTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07051348.2 ENSRNOG00000060791 ENSRNOT00000078218 3 1 1 80 3 5305936 5306039 ACTTCACACTGTGGATGTG 58 5306080 5306101 TACTATTTAAGTAGGCCACACC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000052697 ENSRNOT00000091627 3 1 1 60 1 88769487 88769505 CTTGGCAAGTGTCTCTGTG 59 88769528 88769547 GAGAGTTTAGCTTCGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054622 ENSRNOT00000079029 3 1 1 60 1 241873531 241873553 GATACAGAGAAGATTAGCATGGC 59 241873493 241873511 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053189 ENSRNOT00000082911 3 1 1 60 5 35110575 35110596 TATGTGAAACAGTAAGTGGCAG 59 35110536 35110557 GTCAGAACACAGAGTATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056296 ENSRNOT00000091361 2 1 1 60 3 114443768 114443788 TCCCTTGCTATTGAGATGGAC 60 114443728 114443748 CCACTATCACAAGTCATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017104.1 ENSRNOG00000058491 ENSRNOT00000075684 3 1 1 109 15 11091311 11091332 ACAGATAGAGGCCTTATATCCA 58 11091401 11091422 GCTGTGAATTCGTTTAGCTC 58 Novel Rattus norvegicus 81 AABR07058578.1 ENSRNOG00000029243 ENSRNOT00000049445 3 1 1 60 7 125497442 125497460 AAACTCACCAAACTGCAGG 59 125497400 125497419 TCTTTCTACGAGCAGTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052756 ENSRNOT00000081082 2 1 1 63 1 80369851 80369869 CTTCTTCGGATTGCTGACC 59 80369806 80369824 GCTACCACAAATTATGCGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029198.1 ENSRNOG00000056896 ENSRNOT00000081217 1 1 1 81 10 12947538 12947833 CCGAAAGGACCACAAACAC 59 12948113 12948131 TAGAACTGTCACCACAGGG 59 Novel Rattus norvegicus 81 Rn60_9_0975.2 ENSRNOG00000059440 ENSRNOT00000079081 3 1 1 60 9 97785287 97785306 TTGTCCTCACTTTGTTGCTG 59 97785327 97785347 AGGCAAGAATTGACAAATGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 3 1 1 65 1 169095073 169095092 GTACTTCACATCTGTGCGT 58 169095121 169095139 AGCGGTGTACAAGAGACAG 60 Novel DesignNoJunction Rattus norvegicus 81 snoZ6 ENSRNOG00000057911 ENSRNOT00000088985 2 1 1 61 20 11478100 11478118 GAAGTTGCCTCAATCCGAG 59 11478143 11478161 CAGACAGATAAGACGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 2 1 1 65 10 35058569 35058587 TATGCTGTGTCACTCCCAG 59 35058521 35058540 TTTCCTGCATTTCTTGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041894 ENSRNOT00000063647 3 1 1 60 6 54541837 54541857 CACCAATCTTGTCTGATCTCG 59 54541878 54541897 CCCAAGGTCATACTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008890.1 ENSRNOG00000047140 ENSRNOT00000072080 1 1 1 113 2 77425887 77425907 TGGACCAGAGAAACACCTC 59 77425792 77425816 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07017693.2 ENSRNOG00000053791 ENSRNOT00000085082 2 1 1 75 15 30157651 30157669 TTTCACTGGTGGTCCTGTG 60 30157054 30157072 AGAGATTCTGGGTTCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000045960 ENSRNOT00000071366 1 1 1 60 18 29960639 29960659 CAATCTCTGTTTCTTGTGCTG 58 29960681 29960699 ATTTCACCTCCGCATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060033 ENSRNOT00000091770 1 1 1 60 1 30027007 30027025 CCTAGAGGCATTACAGGTG 57 30027048 30027067 CTCTTCTCTGCCACTTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060033 ENSRNOT00000091770 3 1 1 60 1 30027006 30027024 CCCTAGAGGCATTACAGGT 58 30027046 30027066 TCTTCTCTGCCACTTACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106932.1 ENSRNOG00000029083 ENSRNOT00000052241 2 1 1 60 4 152544427 152544451 GTTAAGGACTATGGCAAAGAATCTC 60 152544468 152544487 TGCATTTGAAGTACTCCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017635.2 ENSRNOG00000061833 ENSRNOT00000082167 2 1 1 73 15 29443323 29443341 TTACTCCTAGGCCTTCACC 58 29443131 29443149 CTTTGTTTGACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019663.1 ENSRNOG00000057509 ENSRNOT00000089541 2 1 1 60 13 759822 759842 TCCATCATGTTCTAGTCACAC 58 759861 759882 ACTAGCATCTCTACTTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131483.1 ENSRNOG00000007816 ENSRNOT00000010275 1 1 1 80 3 15773028 15773049 CCAGAATTTACCACCTCCGT 60 15773090 15773110 AGAGTGGCAGGTAAATTTGGA 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000056935 ENSRNOT00000078581 3 1 1 60 13 2838457 2838476 GACAAGGGTATACGAGTAGC 57 2838498 2838517 GACCTTGAGAACTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase3 ENSRNOG00000053457 ENSRNOT00000086535 1 1 1 60 15 28241129 28241147 CTTGTCTTGATGCTTGCCT 59 28241087 28241105 GCTGGATTTCAAACCACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase3 ENSRNOG00000053457 ENSRNOT00000086535 2 1 1 60 15 28241130 28241149 GACTTGTCTTGATGCTTGCC 60 28241089 28241108 TGGATTTCAAACCACTGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055045 ENSRNOT00000080937 3 1 1 60 1 260993764 260993784 CAATAAAGTATGGCTGGTGGG 59 260993805 260993824 CTGTGAGCTCAAAGCTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055549 ENSRNOT00000081735 3 1 1 60 20 12708972 12708991 GCTATCACCCATTCATAGCC 58 12709012 12709032 GAAACACTGTATTAGCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058789 ENSRNOT00000088518 2 1 1 60 10 36724164 36724182 TGAAGAGGACACTCATCCC 58 36724206 36724224 GGACAGATTCAATTGGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055296 ENSRNOT00000080947 1 1 1 60 4 93878948 93878966 GCCACCTACAGGTAAAGCA 60 93878906 93878926 TTCTATGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051902 ENSRNOT00000088911 1 1 1 60 13 57583368 57583386 ATTGCACTCTGGATGTGCT 60 57583326 57583345 TATGCAGTCGAGTTTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047140.1 ENSRNOG00000033979 ENSRNOT00000049520 3 1 1 60 5 21043670 21043689 ATTCAACAGAGAAACGGCAG 59 21043629 21043647 CGTAATCATCAGCGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123185.2 ENSRNOG00000055266 ENSRNOT00000090037 2 1 1 80 15 108869257 108869277 TGAAAGATACACCGATCCAC 57 108869196 108869215 TCTGTTTCCTCTATGCTGTG 57 Novel Rattus norvegicus 81 AABR07049792.1 ENSRNOG00000053773 ENSRNOT00000080559 1 1 1 82 5 138462435 138462455 CTTCAATCCATCCCACTTCTC 59 138462372 138462391 TAGGGAAGGGTGAGATGGT 59 Novel Rattus norvegicus 81 AABR07049792.1 ENSRNOG00000053773 ENSRNOT00000080559 3 1 1 83 5 138462341 138462362 TGCGTTGTAATGTCTTCACC 59 138462276 138462294 ATGTACAGCCATGCAAAGC 59 Novel Rattus norvegicus 81 SNORD70 ENSRNOG00000057685 ENSRNOT00000090276 3 1 1 61 20 43426120 43426140 GAAGTATTTCCTTTGGAACCG 57 43426163 43426181 CTGTCTCAGTGATAGTGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062152.1 ENSRNOG00000060202 ENSRNOT00000085918 3 1 1 80 4 162675228 162675249 GGGATGAATGTAAACAGACCTG 59 162672171 162675187 GAAGGAACTTCCGTTCGTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041764 ENSRNOT00000063517 1 1 1 60 5 76085196 76085214 AAGTGTGCTTGATCTCGTC 58 76085238 76085256 TAAGCATTAACCAGGCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000058631 ENSRNOT00000084205 3 1 1 60 20 27933134 27933153 TAGACCAAAGAAAGTGGCTC 58 27933093 27933111 CAGACTCCCAATGTTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020835.1 ENSRNOG00000036368 ENSRNOT00000054487 2 1 1 62 13 43385466 43385484 ACAACCAACGCAAACTGAC 60 43385510 43385528 GTGAGGCACTCAAAGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060744 ENSRNOT00000086811 2 1 1 60 4 125904887 125904908 GAAATGGAGACATTCTGACAGC 60 125904926 125904947 AGAAAGATACTAACAGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034610.1 ENSRNOG00000056908 ENSRNOT00000090657 2 1 1 80 11 81261129 81261150 AGACTGAAGAGGCTTTCCAG 60 81261192 81261213 CTAAAGCAAAGCATTCAGTGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061840 ENSRNOT00000083001 1 1 1 63 14 49391767 49391787 GTATAAGAGTAGCTCCCTGCT 59 49391806 49391830 CTACATTCCTACAATGGATCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.7 ENSRNOG00000061532 ENSRNOT00000084141 1 1 1 80 15 31533718 31533905 AGATTTGCTGGGTGAGAGG 59 31533948 31533967 TCAGAGCAGGATTAGTTCCC 59 Novel Rattus norvegicus 81 AABR07017825.7 ENSRNOG00000061532 ENSRNOT00000084141 3 1 1 80 15 31533717 31533904 CAGATTTGCTGGGTGAGAG 58 31533947 31533966 CAGAGCAGGATTAGTTCCCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059094 ENSRNOT00000088266 1 1 1 60 14 83170412 83170430 CACAGATACTGGCATTGGG 58 83170370 83170388 GCATGTCTTCCTTGAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017855.1 ENSRNOG00000053749 ENSRNOT00000092202 1 1 1 80 15 31895257 31895457 GGCTCCAATTAAACTGGGTG 59 31895500 31895518 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000053982 ENSRNOT00000090805 1 1 1 60 10 65358152 65358171 GGAAGATAGCGTGACTATGG 58 65358192 65358212 CCAATGTTAGGATCAATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000059370 ENSRNOT00000089426 1 1 1 60 6 124125303 124125323 GGAGAAAGACTGAACAACAGG 59 124125345 124125363 ACAATGAGTTCTGGGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017902.1 ENSRNOG00000061828 ENSRNOT00000079158 1 1 1 107 15 32487767 32487935 TCTGAACTTGGTGAGTGGT 59 32488004 32488024 GCTGTGTTTGTATAAGTGCAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061278 ENSRNOT00000088859 1 1 1 60 10 57895861 57895881 CAAATAGAGGAGGATCAAGGG 58 57895901 57895921 TGTTTAGAGGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gosr1 ENSRNOG00000003971 ENSRNOT00000077038 2 1 1 80 10 63412200 63412218 GGATCAAGCCAAGACAGGA 59 63412260 63412549 GTCGTTTACTCCTGTAAGCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053198 ENSRNOT00000088927 3 1 1 60 13 19138309 19138331 CGATACAGAGAAGATTAGCATGG 59 19138351 19138369 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127191.1 ENSRNOG00000049325 ENSRNOT00000054636 3 1 1 60 7 11072743 11072762 CATGGAAACAGTGACCAGTG 59 11072702 11072720 CTTCACTGTCTCTGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050005 ENSRNOT00000072876 2 1 1 60 5 57678073 57678092 AATGTGCCAAATCTCACCTG 59 57678115 57678133 TTCCAAGTACTAACCGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059524 ENSRNOT00000089214 3 1 1 81 1 116773643 116773663 GGGTCTATGTCGATGATAGCA 59 116773582 116773603 CCTCAGCGTAATACTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047249.1 ENSRNOG00000036483 ENSRNOT00000054591 3 1 1 97 5 25214887 25214906 CTGGAGTATTGTCAGCACAC 59 25214966 25214984 TATTTGGTTGTGAGCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.1 ENSRNOG00000031220 ENSRNOT00000043975 2 1 1 60 5 58184951 58184971 CGTTGTGGTTAAGGACTATGG 59 58184911 58184933 GAAGTACTCCTTGATGACATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.5 ENSRNOG00000051245 ENSRNOT00000075848 1 1 1 60 X 70421884 70421902 GGCTAAGAATGGAACCCTG 58 70421842 70421860 GCTTGACCTGTTTCCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059234 ENSRNOT00000082362 2 1 1 60 10 43392192 43392211 CTTACACCTGCAGATGAGGA 59 43392234 43392252 TTGACCAAAGACCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052382 ENSRNOT00000083334 3 1 1 60 20 22774550 22774568 GAGAAGATTAGCATGGGCC 58 22774592 22774610 TGAAGGAAATGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061392 ENSRNOT00000087975 3 1 1 60 3 22048162 22048184 GATACAGAGAAGATTACCATGGC 59 22048204 22048222 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0812.2 ENSRNOG00000058128 ENSRNOT00000090235 1 1 1 80 9 81399148 81399167 GCAGCAGAATGAAACAAGGA 59 81399210 81400070 CGTGGTTTCCTTGATGCTC 59 Novel Rattus norvegicus 81 AABR07071874.1 ENSRNOG00000055529 ENSRNOT00000083436 3 1 1 67 1 63456981 63457000 TGTAGACATGGGTGAGTTGG 60 63454701 63454719 CACAGTCTTCACTGCACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021022.2 ENSRNOG00000058197 ENSRNOT00000083282 3 1 1 60 13 53782392 53782411 CCTTGGTTCAGAAGGAAAGG 59 53782431 53782452 GTTATTAGCTCTGCTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054692 ENSRNOT00000079920 3 1 1 60 7 81043745 81043767 GATACAGAGAAGATTAGCATGGC 59 81043707 81043725 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057108.1 ENSRNOG00000059252 ENSRNOT00000070974 1 1 1 80 7 55777477 55777499 AGATTTCACCTCACATGCG 58 55777542 55777561 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AC121465.1 ENSRNOG00000048692 ENSRNOT00000072375 3 1 1 60 19 37883897 37883917 GCCTCAAAGTCAGAAATCCAC 60 37883939 37883957 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010085.1 ENSRNOG00000054039 ENSRNOT00000086831 1 1 1 91 2 122690589 122690607 AAGCCTCTTGTTCCCTGTC 60 122690661 122694242 GACAATCTACTTTGAGACACCC 59 Novel Rattus norvegicus 81 snoU6-53 ENSRNOG00000053218 ENSRNOT00000085935 3 1 1 60 13 44049625 44049643 CTAATACTGAGCCACCAGC 58 44049666 44049685 TTGTTAAACTCACTGGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052403 ENSRNOT00000080653 2 1 1 71 13 71532605 71532623 AAAGTATTGCAAGTGCGGC 60 71532552 71532573 TAGACATGACCTCTTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056929 ENSRNOT00000083179 2 1 1 60 15 33489600 33489622 GGAACGATACAGAGAAGATTAGC 59 33489562 33489580 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061541 ENSRNOT00000077155 2 1 1 60 15 83813185 83813207 GGAACGATACAGAGAAGATTAGC 59 83813147 83813165 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060375 ENSRNOT00000087641 1 1 1 60 13 2145812 2145834 CATCAGTACATGGTAGAGAAGAG 58 2145851 2145872 GTTCTCAAATCAGAACACTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060375 ENSRNOT00000087641 2 1 1 60 13 2145770 2145789 TACCATAGAGGTGTTGCACG 60 2145809 2145830 TCTCTACCATGTACTGATGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000060467 ENSRNOT00000090822 3 1 1 60 5 116923659 116923681 GTCCAAAGGTAGTGAGTTATCTC 58 116923699 116923719 AGAACAGGAGTTCAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoMBII-202 ENSRNOG00000054310 ENSRNOT00000078041 2 1 1 74 19 55918126 55918145 GATGACATTCTCCGGAATCG 59 55918182 55918200 AAGCTCGTAGTCAGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058044 ENSRNOT00000087590 2 1 1 61 3 64075784 64075802 AGAGAAGATTAGCATGGCC 57 64075741 64075759 AAATATGGAAGCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052723 ENSRNOT00000081053 1 1 1 60 18 1874222 1874240 CAGTAGATGGCAGAGTGGA 59 1874180 1874201 AGATGTTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058325 ENSRNOT00000077946 1 1 1 60 18 78635404 78635422 TGAAATTGGACCGACACAG 58 78635443 78635464 AATGTGTACATCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057539 ENSRNOT00000090401 2 1 1 60 6 52873616 52873635 TCACATCTGCATCGATAGGT 59 52873657 52873676 TCAGAACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055467 ENSRNOT00000085952 1 1 1 60 20 19191590 19191608 AAAGCCCACATGTTAGGGA 59 19191629 19191650 GGGTAGAAATGAGACACATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000057114 ENSRNOT00000091740 1 1 1 60 18 47047087 47047106 AGTCAGTAATTGACACAGCC 58 47047127 47047147 TCAGCCATCTTAAAGGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057974 ENSRNOT00000084253 3 1 1 60 20 2565493 2565514 AATCTGTCTACCCATTGATCAC 58 2565454 2565477 ACTTAGAGCTAGTCAGATCATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060150 ENSRNOT00000091289 3 1 1 64 15 83765906 83765924 AAGCTTATCCGTTGCACTC 58 83765860 83765879 GCTGAATTTCCCATCATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055352 ENSRNOT00000088058 3 1 1 67 18 47273212 47273230 TTATCCATTGCACTCCGGA 59 47273163 47273181 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057971 ENSRNOT00000090229 3 1 1 62 7 17460923 17460944 CAGATCGTATAAATCTTTCGCC 58 17460965 17460985 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054456.3 ENSRNOG00000049208 ENSRNOT00000074770 2 1 1 60 3 154234740 154234759 TGTGACAAACGAAGTAGCTC 58 154234699 154234721 ACTCATCTCGTAGTTGGTAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056726 ENSRNOT00000089846 3 1 1 60 7 121371484 121371503 CCTTCCTAGCCATGGAAGAG 60 121371443 121371462 ACCAATGAAATGGTGACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052218 ENSRNOT00000079398 2 1 1 60 7 121675548 121675567 TGTCACATCAGTAGGTAGCA 58 121675507 121675526 CAGATCAGAACACTGAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000059688 ENSRNOT00000084835 2 1 1 60 10 83253788 83253810 GCTACTCAATTCAGGCTATTTGG 60 83253830 83253848 GGTATGGTCCACTGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056815 ENSRNOT00000081001 2 1 1 60 18 74069180 74069199 GACATTGCAATGTGATTGCT 58 74069222 74069240 ATACCTCTCCTCTTTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057786 ENSRNOT00000082109 1 1 1 61 6 127005753 127005774 TTTATCCACAGAACAGATCCAG 58 127005796 127005814 GGTTTAGGCACATTGGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045261 ENSRNOT00000070528 2 1 1 60 3 149709950 149709969 GTCTTTGACCATTCCACCTG 59 149709991 149710010 GTCTGCTTAGCTTCTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065676.1 ENSRNOG00000056495 ENSRNOT00000084131 1 1 1 102 6 139177238 139177340 TCAAAGCTGTCTCCTGTCC 59 139177406 139177424 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA73 ENSRNOG00000055955 ENSRNOT00000080673 2 1 1 73 5 35951228 35951246 TCTGACATAGTGGTGCAGC 60 35951279 35951301 CACCTCTAATATTGTGGAAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056053 ENSRNOT00000091700 3 1 1 60 18 84431226 84431247 TTTAGTAGGTGGCAGAACAGAG 60 84431262 84431286 GATGTTCATAGGTCAGAACATTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037270.1 ENSRNOG00000048303 ENSRNOT00000073882 3 1 1 60 X 17683684 17683703 GTTAAGCTCAAGCAGCTTCC 60 17683643 17683664 CACTCCAGGGAAGAATATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh5 ENSRNOG00000053850 ENSRNOT00000081756 3 1 1 81 7 3340897 3340916 CTGCTGGATATCACTGATCC 58 3340708 3340853 CAAAGAGCCCAGTTTCTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041679 ENSRNOT00000063432 2 1 1 60 3 82292220 82292241 TGATCCTGTCTGATTTCAGGAG 60 82292181 82292202 TCTGCTTAGCTTCTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060254 ENSRNOT00000086107 3 1 1 70 3 88742404 88742424 ATCTGAGGCACTATTACTGCT 59 88742456 88742474 AAGAGGCTTACCAGTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028237.1 ENSRNOG00000018685 ENSRNOT00000025224 1 1 1 60 17 61331260 61331281 TACAGTTGATAAATCTCAGCCC 58 61331221 61331240 GCTACACAATTTCACAAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679803 ENSRNOG00000051949 ENSRNOT00000082081 1 1 1 60 5 137635498 137635517 GATCTGTGGTTTCCTTTCCT 58 137635457 137635476 ACAATATGGCAGACTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060834 ENSRNOT00000092219 3 1 1 60 18 16703905 16703924 GAACTGTTTGTTCCTAAGCC 57 16703946 16703965 TGAAAGTTCTAGAAGGGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026842.1 ENSRNOG00000031349 ENSRNOT00000047795 3 1 1 60 17 2920948 2920969 GATTGAGCAGAGACAAAGACAG 59 2920989 2921008 ACATCTGAATGGCTCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060592 ENSRNOT00000078062 1 1 1 60 4 168018483 168018501 GAGGGAGGCTATGTCTGTG 59 168018441 168018459 ACGCTGCTTATCATTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056920 ENSRNOT00000080312 1 1 1 75 18 75067006 75067024 GATACCGTGATCACGGAGG 60 75067063 75067081 CAAGTTTGGGTCAGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042733.2 ENSRNOG00000060024 ENSRNOT00000092016 3 1 1 83 19 6026880 6028625 TTTAAGAAGGTACTGCCGTG 58 6026816 6026834 CATCTAAGAGGACTGGTGC 57 Novel Rattus norvegicus 81 SNORD94 ENSRNOG00000055675 ENSRNOT00000083533 2 1 1 60 4 99797599 99797617 TGAATGTATGTGCTCTGCC 58 99797557 99797576 TCATGTATGTGAATGCCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000051492 ENSRNOT00000083318 2 1 1 60 18 28355381 28355400 GCAAAGGCTGCTTTAGAAGG 60 28355423 28355441 GGTACTCAGCACCAAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094421.1 ENSRNOG00000017586 ENSRNOT00000023626 1 1 1 60 10 14533283 14533301 TTACCCACGATTCTCCGTC 59 14533241 14533260 TTCTCTTTGTGTTTCCGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055774 ENSRNOT00000081532 3 1 1 70 X 96926262 96926281 TACCACCTACAGGTATAGCA 57 96926211 96926229 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000059514 ENSRNOT00000089562 1 1 1 60 X 113464789 113464807 CTTGAAACCAAGAGCTCCC 59 113464747 113464765 GAGTCCCTTTATCGTCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058828 ENSRNOT00000081385 1 1 1 60 7 13284703 13284723 CAGAAGGGTAAAGGAAGTCTC 58 13284745 13284763 ATCCAAAGAGGAGGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055040 ENSRNOT00000082941 2 1 1 60 4 104836175 104836193 AAGTGGATCAGTAGGTGGC 59 104836212 104836235 CAGGTTAGAACACAGAGTATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054276 ENSRNOT00000088801 3 1 1 75 15 88744274 88744292 CATTTCAGCAGCACCTACG 59 88744329 88744349 GCATGTCATTTCTGTACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000051976 ENSRNOT00000078011 3 1 1 60 6 133775517 133775536 ATCTGCGAGTGTTGTATGAG 58 133775558 133775577 GACCTCAGACTTGGAAAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057216 ENSRNOT00000086212 2 1 1 60 15 69669660 69669680 CCTGGTATTTCCTCTAATGGG 58 69669702 69669720 GCAGTCTTTCCACTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058584 ENSRNOT00000087202 1 1 1 60 15 27845185 27845204 CTGTAATGATGCAGAGGACG 59 27845226 27845245 CTTCAGGAATTTGAGTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000058198 ENSRNOT00000079026 2 1 1 60 6 43450558 43450576 TTGGAAGCTAAGCAGGGTC 60 43450516 43450534 AGTATTCCCAGGCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000059127 ENSRNOT00000086157 1 1 1 60 20 8817265 8817283 TGTCCAGAACTGGTCAGTG 59 8817223 8817246 CTGTCACCACTGTAACTTAATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051864 ENSRNOT00000083230 1 1 1 60 20 50377325 50377343 GTGTCAGTAAGTGGCAGAG 58 50377283 50377301 TTTACAGAGCAGAACGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000057605 ENSRNOT00000088011 3 1 1 64 10 74626797 74626815 AACTGACCAGGTTCCTTCC 59 74626843 74626861 GAATACCACCAAGGAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000054611 ENSRNOT00000087480 3 1 1 60 15 85776138 85776159 ATACACTGTCTAGCCTCATAGC 59 85776178 85776198 TGTTTGAATTTAGCCCTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059855 ENSRNOT00000081293 1 1 1 60 15 91271284 91271304 GAAGATTAGTCATGGCCTCTG 58 91271325 91271344 TTGTATGGAACATGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059855 ENSRNOT00000081293 3 1 1 60 15 91271276 91271299 GATACAGAGAAGATTAGTCATGGC 59 91271318 91271336 AACATGTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.9 ENSRNOG00000058426 ENSRNOT00000081803 2 1 1 98 6 138852437 138852539 GACATTTCCAAGCTGTGTCC 60 138852358 138852376 GAGACAGTGCAGGTGAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059196 ENSRNOT00000083107 2 1 1 60 4 174893974 174893994 CAAACAAGCTCTCAAGAAACC 58 174893934 174893957 TATGACTGCCTAATAGTAAGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006333.1 ENSRNOG00000050414 ENSRNOT00000074256 2 1 1 80 1 229206226 229206249 CCTATGGTACAAGTTGATAAGGG 59 229206168 229206191 CTCAGGAATTTCTCTGAGAATCAC 59 Novel Rattus norvegicus 81 AC132539.1 ENSRNOG00000052063 ENSRNOT00000079648 3 1 1 85 8 119261889 119261907 TAGAGGAGGACTGTGAGCA 59 119261956 119262139 TCTGAAGAAGTGCTCCTCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058865 ENSRNOT00000083838 1 1 1 61 15 81606799 81606821 CCTACCACTAGAGTTATTTCAGG 58 81606760 81606780 TCTGCAACCTACAACTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051668 ENSRNOT00000082935 2 1 1 60 20 11037076 11037094 CTTTGGCCAAGGGAATCAG 59 11037118 11037136 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000059267 ENSRNOT00000082651 3 1 1 60 6 95456384 95456408 ATATTCCTATGACTTCTCAGAGTCC 60 95456348 95456366 CTCCTCCATGGTTTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000052933 ENSRNOT00000078542 1 1 1 60 19 46006549 46006568 GGGCAAGACTTTAACAAGTG 57 46006508 46006526 ACTGAACAATGAGCTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000059119 ENSRNOT00000087821 1 1 1 60 20 2219571 2219589 AGGCAGAGTAAACCTACCC 58 2219613 2219631 CAAGACGTACCAGGTACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055311 ENSRNOT00000077848 3 1 1 67 11 83848525 83848543 TTATCCATTGCACTCCGGA 59 83848476 83848494 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058366 ENSRNOT00000083178 1 1 1 60 19 2456838 2456856 AGAGACTTTGACAGCCCAG 59 2456878 2456898 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058366 ENSRNOT00000083178 2 1 1 60 19 2456805 2456823 CATGGGATCTCCAACTGCA 60 2456847 2456865 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052642 ENSRNOT00000092229 1 1 1 60 19 12375594 12375613 TGCACTTGGAGTTTGTTGAC 59 12375635 12375654 AGTATGCAGTTGTGTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058702 ENSRNOT00000082913 2 1 1 60 11 79317081 79317102 TGTACATCAGTAGATGGCAGAG 60 79317042 79317060 TAGGTCAGAGTCCTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000058981 ENSRNOT00000078524 2 1 1 60 18 26569098 26569119 CATAAATTAATGCTTTGCGGCC 60 26569138 26569158 CTCCTGAAACCCAAGATACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053645 ENSRNOT00000088434 2 1 1 72 19 27479270 27479289 CTCAATTTAGCAGCACACGA 59 27479217 27479235 ATTGCTTGTCACTGTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000052604 ENSRNOT00000087916 1 1 1 80 13 56763959 56763977 GGTTCTGTAACCTGTTGCT 58 56759408 56763915 TGCATGCTATTCCTTCACC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000053980 ENSRNOT00000092010 2 1 1 60 11 3269631 3269651 ATATGGAGTAGCTGCCTTCTC 59 3269670 3269691 CTTATGGTCTTCTCAAGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000056676 ENSRNOT00000088693 1 1 1 60 18 10922313 10922334 ACTATGGAAATCAATAGGGCAG 58 10922355 10922373 CTCTGGCAAGGTTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059336 ENSRNOT00000091303 2 1 1 60 7 141967402 141967423 ATACAGAGAAGAATAGCATGGC 58 141967363 141967381 GGAACACTGCACGAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051701.1 ENSRNOG00000060562 ENSRNOT00000080646 3 1 1 80 3 19559674 19559692 GTGGCAATGACTCTGAGAC 58 19557956 19559337 AATGTCATTGCCAGATAGGTC 58 Novel Rattus norvegicus 81 ENSRNOG00000053366 ENSRNOT00000083050 1 1 1 156 1 84940249 84950058 TGAGCCCAGATTTGGAGTC 59 84940111 84940131 AATGTACTATAGCTGTGGCCA 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045356 ENSRNOT00000070623 1 1 1 60 11 64849017 64849035 GTCTGCAGTCATTCCACAC 59 64849057 64849077 GAATGCTTAGCTTCCAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056172 ENSRNOT00000084761 3 1 1 60 5 91135020 91135038 ATGAAGAACGCAGCTAGCT 60 91135061 91135080 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052911 ENSRNOT00000090282 1 1 1 60 18 62745427 62745446 GCGTGGATTTGGATTTATGG 58 62745468 62745487 CTAGCATGGGACACTATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045322 ENSRNOT00000070589 2 1 1 60 5 59194205 59194224 GATCTCAGAGGCTAAGCAGG 60 59194246 59194265 AGAATGGCTTATCTCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058032 ENSRNOT00000090826 3 1 1 60 5 114474021 114474043 GGGAGATAACATGTTCACAAAGG 60 114474060 114474081 CCAGAGTGTGATAAACAAACGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128303.2 ENSRNOG00000059712 ENSRNOT00000085048 3 1 1 80 6 93371398 93371420 GCTTCCCTATCTCATGTTGGA 60 93371462 93371480 CTCTGCTTGGTGTCTACCT 59 Novel Rattus norvegicus 81 AABR07030823.1 ENSRNOG00000046001 ENSRNOT00000072687 1 1 1 178 10 105283579 105283597 ACTGCAGGAGTTTGAGGAG 59 105283417 105283437 AGTCAAAGTTACCTTTGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058124.3 ENSRNOG00000055178 ENSRNOT00000077137 3 1 1 60 7 101138778 101138798 AAACAGCCCTGTATTAAGTGC 59 101138738 101138756 CATTTGTAGCCTGTAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060992 ENSRNOT00000089289 3 1 1 61 11 71434460 71434478 GAGAAGATTAGCATGGCCC 58 71434502 71434521 AAATAGGGAACGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034413 ENSRNOT00000052536 2 1 1 60 11 41135399 41135420 ACCAGATTTCATTTGCTCTCAG 59 41135437 41135459 CTCATCCAAGTACTAACTAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004134.1 ENSRNOG00000056928 ENSRNOT00000079160 1 1 1 80 1 126633198 126633217 TTGGAGATACCTGTTCAGGG 59 126633131 126633156 CTGGCTTTGTTCTAATTGGCT 59 Novel Rattus norvegicus 81 AABR07049149.1 ENSRNOG00000024197 ENSRNOT00000029509 1 1 1 60 5 107608656 107608677 CTGTCAAAGCCTAAGAAATGTG 58 107608617 107608637 TGTGGTAAGAGTCCTTTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000061640 ENSRNOT00000086281 1 1 1 61 4 136623251 136623273 GGTTACTTCTTAACACTGTGACC 59 136623212 136623230 CAAAGTGCATGGTCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072668.1 ENSRNOG00000033345 ENSRNOT00000091620 2 1 1 60 19 59991426 59991445 TTAAGGAAGACCACTCGCTG 60 59991385 59991403 GGCTTCACTCTGATCTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 1 1 1 88 1 169279912 169279930 GTGTCTTTCTCCACACTGC 59 169279841 169279860 AACATCTGAGTCAAGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000061017 ENSRNOT00000081911 2 1 1 60 18 41835189 41835209 CCTCTGTAGTCAGTCAAAGGA 59 41835149 41835170 AAAGTCTTTCCATTACTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061017 ENSRNOT00000081911 3 1 1 60 18 41835187 41835206 CTGTAGTCAGTCAAAGGAGC 58 41835146 41835169 GTCAAAGTCTTTCCATTACTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059651 ENSRNOT00000090556 2 1 1 60 4 139165547 139165565 TCGGTCAAGGGTATACGAG 58 139165505 139165523 CTCGAGAGCTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034404.1 ENSRNOG00000041444 ENSRNOT00000063197 3 1 1 68 11 68586074 68586097 GACATTGGAAGAAGGAAGATTCTC 60 68586029 68586048 GATCTAGCAGTTGCTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056681 ENSRNOT00000091438 2 1 1 72 6 101253230 101253248 ATTGTAAGTGTGGCTGCTG 59 101253282 101253302 TCATAGGTCAGAACACCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057743 ENSRNOT00000080777 1 1 1 60 4 156529814 156529835 CATGTATGTCAGTAATTGGCAG 58 156529855 156529874 TCCTAGGTCAGAACATTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134651.1 ENSRNOG00000028529 ENSRNOT00000037907 1 1 1 60 2 205504435 205504454 AACACTACACAGGACCAGAC 59 205504478 205504496 GGCTGCTTCTAATGCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063248.1 ENSRNOG00000053778 ENSRNOT00000080972 1 1 1 69 6 24200594 24200615 ACATACACTCACACTCATACAC 58 24200546 24200565 CGAGTGTGAGTATAGGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058468 ENSRNOT00000082118 1 1 1 60 11 40372666 40372684 CTGCTGTGTCACAACTGTC 59 40372624 40372643 GACACTGAGTTTAGACAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061079 ENSRNOT00000091924 3 1 1 64 7 93146531 93146549 AGTAGGTGGCAGAGAAGAG 58 93146485 93146505 GCTACTAATCCTTCAGGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055492 ENSRNOT00000090204 2 1 1 62 6 30232787 30232806 CATCAGAGCTGATTCAGCTG 59 30232831 30232849 GAGTGGTGAGGGAGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042937.1 ENSRNOG00000052015 ENSRNOT00000081292 3 1 1 81 19 14951694 14953606 AGCTCAACAACGTAATGAAGTC 59 14951634 14951655 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 AABR07058646.1 ENSRNOG00000050863 ENSRNOT00000072180 1 1 1 60 7 129501152 129501171 AATGCTTCCATGAGATCCAG 58 129501194 129501212 CCCTTCCTCCCTTGATCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051804 ENSRNOT00000091959 1 1 1 60 4 93889292 93889310 GAGTGTCAGTAGGAGGCAG 59 93889250 93889268 AGGATGTTGGTGAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052281 ENSRNOT00000079210 1 1 1 61 7 126031120 126031138 ACAGAGATTAGCATGGGCC 60 126031163 126031181 AAATATGGAACGCTTCGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059891.1 ENSRNOG00000060069 ENSRNOT00000089205 2 1 1 60 4 40419717 40419735 TGTTACAGGCATCTGTGCT 59 40419673 40419693 AGTCATATCTGTCCATTTCGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052462 ENSRNOT00000080164 2 1 1 60 6 34700088 34700106 AAGCAGGTAGCAGAAAGGA 59 34700128 34700148 CATTCAGATGTTTGTCGACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044494 ENSRNOT00000069761 2 1 1 60 17 61415744 61415762 GATCTCGGAAGTGAAGCAG 58 61415702 61415720 GTGGCCTTAGGAAGACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013931.1 ENSRNOG00000051869 ENSRNOT00000079568 2 1 1 60 2 264153633 264153652 ATGAAGAAGGAGAGGCAGAG 59 264153592 264153610 TCTTCCAACCCTTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001905.1 ENSRNOG00000057250 ENSRNOT00000090287 1 1 1 80 1 61786960 61786978 CTGGGTTCTGATCAGAGGG 59 61787020 61787910 GCGATGGTTCTCTACAAAGAC 59 Novel Rattus norvegicus 81 U3 ENSRNOG00000060466 ENSRNOT00000083723 2 1 1 60 10 74778222 74778245 CGTTACTAGAGAAGTTTCTCTGAC 59 74778264 74778282 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041728 ENSRNOT00000063481 2 1 1 60 7 15055543 15055564 TGAATGTACCCAATCTCATCTG 58 15055504 15055523 TCTCCAAGTACTAACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076492,ENSRNOT00000076064 3 2 2 80 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70512262 70512283 CAGAAATGATGAATCCTCCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053419 ENSRNOT00000084084 2 1 1 60 7 92031019 92031040 GATACAGAGAAGATGATCGTGG 58 92031060 92031079 GAATGCTTCATGAGTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054884 ENSRNOT00000092153 1 1 1 63 4 129529594 129529612 TTGAGTTCAGTTCAGGGCA 59 129529549 129529567 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054884 ENSRNOT00000092153 3 1 1 64 4 129529594 129529612 TTGAGTTCAGTTCAGGGCA 59 129529548 129529567 CAGCCAATTTCAATGTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.1 ENSRNOG00000022738 ENSRNOT00000031394 1 1 1 60 6 79149607 79149625 CCTGAAGTCTCTGAACCCA 59 79149565 79149583 AACATCCTTCCACTGCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057694 ENSRNOT00000081451 3 1 1 60 9 96338196 96338218 GATACAGAGAAGATTAGCATGGC 59 96338158 96338176 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055502 ENSRNOT00000077600 1 1 1 60 10 59447530 59447554 GGGAGACATTATAATCAAGAAGGTG 60 59447571 59447590 CCAAGGGTCATAGTTAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061461 ENSRNOT00000081563 2 1 1 60 10 7300108 7300126 ATGTGTCGATAGGTGGCAG 60 7300066 7300084 CATGGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052844.1 ENSRNOG00000051607 ENSRNOT00000045225 3 1 1 82 3 78508607 78508630 GATCTCTTAAGACTCAAAGTCAGG 59 78508547 78508567 AAAGAGGATGACAACCAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059708 ENSRNOT00000084832 2 1 1 61 4 67043334 67043352 GTGCTCAATTTGGCAACAC 59 67043291 67043309 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008285.1 ENSRNOG00000054616 ENSRNOT00000086521 2 1 1 60 2 51412125 51412143 GCAGACTTGTGTACAATGC 57 51412083 51412103 GGATTAAGGTCCTTGTAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1102 ENSRNOG00000059936 ENSRNOT00000080497 3 1 1 60 7 139802652 139802670 TTCTCCCTCCTCTACACCA 59 139802610 139802628 TGCGGAAGCTGTAGATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108635.1 ENSRNOG00000046778 ENSRNOT00000075337 2 1 1 90 7 6547730 6547748 TTGTGATGCAGCTCCTCTC 60 6547799 6547822 GATTATGAATGTCACAGCACCA 59 Novel Rattus norvegicus 81 AABR07072761.1 ENSRNOG00000030494 ENSRNOT00000042769 1 1 1 60 2 195856441 195856460 AGATTGCAGAGTTGAAGAGG 58 195856400 195856420 TTCCTTAGTCTTTCGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012030.1 ENSRNOG00000053252 ENSRNOT00000071276 3 1 1 87 2 182796684 182796702 CTTCCAGCTCTTTAGGCAG 58 182796614 182796634 CTGGCTTAGTAGTGAAGAGG 57 Novel Rattus norvegicus 81 AABR07073173.1 ENSRNOG00000054734 ENSRNOT00000082841 2 1 1 60 5 152466384 152466403 TGGAGAATCTGAAGAGGACC 59 152467765 152467783 CTCAGACTCCACCAAAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC119007.1 ENSRNOG00000036872 ENSRNOT00000055353 1 1 1 67 7 142941262 142941280 CTGTGGGATCCTGTTCCTG 60 142941311 142941329 GAGCTAGCAGGGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058684 ENSRNOT00000085449 2 1 1 60 3 32761870 32761888 TGGCACATGCATATAGTCC 57 32761911 32761930 TGGACTCAAATGATCCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019895.1 ENSRNOG00000056798 ENSRNOT00000070835 3 1 1 60 13 6456361 6456381 TCCATCATGTTCTAGTCACAC 58 6456321 6456343 ACTAGCATCTCTACTTCTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045006 ENSRNOT00000070273 2 1 1 60 13 79439199 79439220 ACCTGATCTAGTCTGATCTCAG 58 79439160 79439181 CTCATTCAAGTATTAACCAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054449 ENSRNOT00000078587 3 1 1 60 13 28228952 28228974 GTGTTTCAGTAGGTGGTAAAGAG 59 28228994 28229012 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059242 ENSRNOT00000084943 2 1 1 60 13 7096398 7096419 CCTAAAGGCATTATGGGTAGTG 59 7096359 7096377 TACTTCCTGCCACCTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061505 ENSRNOT00000087307 3 1 1 60 1 263635302 263635321 GAGATTAACATGGCTCCTGC 59 263635261 263635280 TTAAATATGGGAGGCATCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058530 ENSRNOT00000081656 1 1 1 60 8 126876705 126876723 TCGATGAAGAATGCAGCCA 60 126876746 126876765 CCATGATCAATGTGTCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000054454 ENSRNOT00000081205 3 1 1 101 8 75425216 75425234 CCTCTGTATATCCGCAGGG 59 75425298 75425317 TACCACCTCTAGAGTGGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024735.1 ENSRNOG00000058290 ENSRNOT00000077388 1 1 1 96 16 13050724 13050742 CACCTTCTATGTCCCTGCC 60 13050802 13051282 ATCACTTGGACCAAGCCTC 60 Novel Rattus norvegicus 81 AABR07024735.1 ENSRNOG00000058290 ENSRNOT00000077388 3 1 1 97 16 13050723 13050741 ACACCTTCTATGTCCCTGC 59 13050802 13051282 ATCACTTGGACCAAGCCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052041 ENSRNOT00000091302 1 1 1 60 1 94591131 94591153 GGAACAATACAGAGAAGATTGGC 60 94591093 94591111 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055520 ENSRNOT00000091366 1 1 1 60 8 2208888 2208911 GTATAAATAGAAGTGGGTCCTCTC 58 2208851 2208869 TGGTTAGGAGCCAGTATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055520 ENSRNOT00000091366 3 1 1 62 8 2208868 2208886 TAGTGTCCCATGCTAGAGC 59 2208824 2208842 CAACCTACATGCACCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041865 ENSRNOT00000063618 1 1 1 60 8 122345812 122345834 CCAATCTCATCTGATTTCAGGAC 59 122345852 122345872 TTCCTGTTCAAGTACTAGCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128582.1 ENSRNOG00000051988 ENSRNOT00000091386 2 1 1 60 8 79862776 79862794 AGGATTCGAAGCTACATGG 57 79862734 79862752 TTTGAACCTTGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044520.1 ENSRNOG00000060173 ENSRNOT00000088409 1 1 1 60 20 9173171 9173189 CCATTGCCTTCTCCATTCC 59 9173213 9173231 TCCATGTGAACTCACTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115322.4 ENSRNOG00000060449 ENSRNOT00000084027 2 1 1 108 3 175629394 175629412 GTTTGTGGACCTGTACGTG 59 175629585 175629752 TGTACTCCTGTCAACCTCG 59 Novel Rattus norvegicus 81 AABR07053667.1 ENSRNOG00000057409 ENSRNOT00000086998 1 1 1 84 3 119372669 119372687 CACTGAGCCATCTTTCCAG 58 119372603 119372621 TACACTCTGAACCCTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059287 ENSRNOT00000087538 3 1 1 60 3 151754372 151754392 GCTGTGTCACATGTAAATCAG 58 151754409 151754432 AAGTCAGTATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA64 ENSRNOG00000060026 ENSRNOT00000077474 2 1 1 60 3 83631635 83631653 TGTGACTTTCGTACTGGGA 58 83631593 83631613 TGAAGCCAATCCAAAGTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054424.1 ENSRNOG00000050427 ENSRNOT00000073120 3 1 1 60 3 153231165 153231185 CTTACTGTGTAACCCAAGCTG 59 153231125 153231143 GAGTTAGAGGCTAGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000057340 ENSRNOT00000080125 2 1 1 60 16 39354476 39354496 TACACAACTTCCCAAATCCAG 58 39354518 39354536 ATCACTCCATTTCCACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD12 ENSRNOG00000054081 ENSRNOT00000077844 3 1 1 60 3 163817255 163817274 GGTGAAGCTGATGATACCAC 59 163817295 163817315 TAGCATATGAGATCAACAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026233.2 ENSRNOG00000055604 ENSRNOT00000081838 2 1 1 60 16 68635053 68635071 CTATGCCACCCAAGAAGAC 58 68635095 68635113 AAAGACTTGTGAAGCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132741.1 ENSRNOG00000059369 ENSRNOT00000090188 3 1 1 81 3 160679360 160679608 GATAGGAATCTATGGTGGGAC 57 160679651 160679669 GAGGAACTGGCCTTTATCG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059174 ENSRNOT00000084125 2 1 1 60 3 140565413 140565435 GATACAGAGAAGATTAGCATGGG 59 140565454 140565473 GGACGTTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061411 ENSRNOT00000082625 2 1 1 60 3 109824084 109824103 AGATGCCATGATGACAAAGG 58 109824043 109824064 CATCCTGAGAGCAATTGATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061634 ENSRNOT00000079099 2 1 1 60 16 76183756 76183776 ATGTGGGTCAGTAGGTAACAG 59 76183797 76183816 ACAGATCAGAACACTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031166.1 ENSRNOG00000058649 ENSRNOT00000081055 2 1 1 80 18 2857323 2858517 GAGCATCAGACACAACTTGG 59 2857262 2857282 CAAGGCATCAGAGTAGAAGGA 59 Novel Rattus norvegicus 81 AABR07014820.1 ENSRNOG00000058429 ENSRNOT00000077589 3 1 1 81 14 32673787 32673807 CAAGGTCTGACTGAGTTTGTC 59 32672285 32673744 TTCAGTTCTTCCCTTGCCA 59 Novel Rattus norvegicus 81 AABR07031251.1 ENSRNOG00000053296 ENSRNOT00000090524 1 1 1 66 18 5839157 5839175 GTAGAGACACTGTGGCTGG 60 5839004 5839127 GGTTGTTCTGAAGACTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031253.1 ENSRNOG00000058026 ENSRNOT00000080420 2 1 1 82 18 5913995 5914504 GTATCCAGAAGGAAGCCCT 59 5913931 5913950 ATGCAGACCATGTAGATGTC 58 Novel Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 2 1 1 89 18 7335069 7335089 CTGCTCTTGATGATGGAACAG 59 7335137 7343946 TTCTAAACACTCATGGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 1 1 1 81 18 8497668 8503629 TTCCTGGAACAGAGCACAG 60 8497605 8497623 CTTTCCATTTCCAGGCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031402.1 ENSRNOG00000059577 ENSRNOT00000083984 1 1 1 94 18 12348296 12379462 TACACATGCTGAAGAGGTGG 60 12348221 12348240 GCAGCACTGGAAGATAAGTG 59 Novel Rattus norvegicus 81 AABR07046830.1 ENSRNOG00000051477 ENSRNOT00000079045 1 1 1 137 5 8611719 8611738 AGACTGTAGAAGGAATGCCA 59 8611837 8615209 ACTTAAGTGGGTCCACTCTC 59 Novel Rattus norvegicus 81 AABR07015394.1 ENSRNOG00000056871 ENSRNOT00000078937 3 1 1 99 14 53771876 53771894 CACACCATACTCCTTTGCC 59 53771956 53774428 ATCTTTGGTCCCAAGTAGCA 59 Novel Rattus norvegicus 81 AABR07060595.1 ENSRNOG00000054078 ENSRNOT00000088866 2 1 1 72 4 83332364 83332382 CACTCACTGAGGAGTGGTC 59 83380032 83380050 TTTAACTGGTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047103.1 ENSRNOG00000052266 ENSRNOT00000091908 2 1 1 81 5 19730909 19730928 TTTGAACAACCACTGAGGAG 58 19727953 19730870 ATAGGCCTACTCTGTATAGTTGAG 59 Novel Rattus norvegicus 81 AABR07047174.2 ENSRNOG00000057656 ENSRNOT00000090094 3 1 1 84 5 22204372 22205539 TGGAACCCAGATTGAACTG 57 22205586 22205605 ATATTGGTTGCGCAAATTGG 58 Novel Rattus norvegicus 81 AABR07047174.1 ENSRNOG00000057401 ENSRNOT00000085989 3 1 1 87 5 22255632 22256017 AAACATTTGTCACTCTGTGCC 60 22255565 22255585 GGCTGCTGTAGTTATGAACAC 59 Novel Rattus norvegicus 81 AABR07060769.1 ENSRNOG00000052931 ENSRNOT00000088910 2 1 1 82 4 93013087 93013106 GAGCTTGTCCTGTATCAGGA 59 93013149 93033358 TAACTCCACCCTTCTTGATGG 60 Novel Rattus norvegicus 81 AABR07060862.1 ENSRNOG00000053679 ENSRNOT00000084701 3 1 1 86 4 97829431 97829449 TGTGTTCCACAAATGTGCT 58 97830320 97830338 CAGCTTTGAGAAGCACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015783.1 ENSRNOG00000054226 ENSRNOT00000081410 1 1 1 80 14 76153086 76153105 AAATCAACCATGGACTCTCG 58 76145820 76153043 CATTCCCGGTGACTTTGAG 59 Novel Rattus norvegicus 81 AABR07015846.1 ENSRNOG00000060138 ENSRNOT00000087729 1 1 1 80 14 80623858 80623876 AAGAGGAGAAGCAGAAGCA 59 80622961 80623816 CAGACATTTCTTCCATCTCCC 59 Novel Rattus norvegicus 81 AABR07030334.1 ENSRNOG00000054653 ENSRNOT00000090427 3 1 1 88 10 81887764 81887783 CCAGCTATGATGAAGACCAC 58 81884211 81887714 AAATGGGATCCTTTGAGGAC 58 Novel Rattus norvegicus 81 AABR07048303.2 ENSRNOG00000055665 ENSRNOT00000077721 3 1 1 83 5 71452159 71461287 TTTGTGGAGGCATATGGCT 59 71452094 71452118 GAGTTGTCAAGTCAGAATATGAGAC 60 Novel Rattus norvegicus 81 AC229945.2 ENSRNOG00000057584 ENSRNOT00000079104 1 1 1 107 5 79922579 79922597 CTGACCTCATCTCCACCTG 59 79922668 79955164 TTTGTTCCAGGACCTCCTG 59 Novel Rattus norvegicus 81 AABR07061448.2 ENSRNOG00000059421 ENSRNOT00000079876 1 1 1 80 4 125192439 125192458 CAACACCATGACTTGAAGCT 59 125192500 125204082 CCTACTTGTTCTGTGACCAC 58 Novel Rattus norvegicus 81 AABR07061448.2 ENSRNOG00000059421 ENSRNOT00000079876 2 1 1 81 4 125192486 125204072 CAAGAATGAGATAAGTGGTCACAG 60 125204112 125204130 TTTGGCTTGTTCCCATGAC 59 Novel Rattus norvegicus 81 AABR07061453.2 ENSRNOG00000057351 ENSRNOT00000084886 1 1 1 84 4 125583806 125634757 ACCACAAGAATGAGAACAGGA 59 125634803 125634821 TTCAAGTCTGCATCACGGT 60 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 2 1 1 61 14 104764531 104768599 GGTGTTCTGCAAGCATCTC 59 104768624 104768642 TGTAAGACGGCGGTAATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.3 ENSRNOG00000052645 ENSRNOT00000089357 3 1 1 81 10 93194076 93194096 CTTGGAGACATGGGAATAGAG 58 93194138 93194966 AGACCTTTCCATCATCAACG 58 Novel Rattus norvegicus 81 AABR07000723.1 ENSRNOG00000056881 ENSRNOT00000080217 2 1 1 81 1 24737871 24737891 AGCTCTAACACAGAGATTCAG 57 24737931 24739748 TTTCTAGAACCATAGAAGACCC 57 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000080878 1 1 2 80 10 93229719 93232203 CTTCCAGCTGACTCTTCTG 58 93232247 93232265 AATGTCTGGCTTACCAGTC 57 Novel Rattus norvegicus 81 AABR07000968.2 ENSRNOG00000061372 ENSRNOT00000083825 1 1 1 90 1 30196312 30196999 GTGAAATTTGATGCCAATGGTG 59 30197050 30197068 TTGCATTGCTTCTTCAGCA 59 Novel Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 2 1 1 60 1 30666713 30666736 CTGGATTCTATTTCTACACAGTCC 59 30666190 30666695 ACCATTCACTTAGTCAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000986.1 ENSRNOG00000054753 ENSRNOT00000089420 1 1 1 80 1 31003575 31003595 GAAGAAGTTATGTGATGCCCA 58 31002547 31003535 GGGTTTGTGGAGATAAACCTG 59 Novel Rattus norvegicus 81 AABR07016722.1 ENSRNOG00000056561 ENSRNOT00000081421 3 1 1 81 14 112624944 112626110 CAACCAAGCCTTATCATCTGG 59 112626151 112626171 GTGTGAATATGCTGAGCTCTC 59 Novel Rattus norvegicus 81 AABR07049035.1 ENSRNOG00000057188 ENSRNOT00000086659 3 1 1 84 5 100882904 100882922 TGTTACAGCTTCTCCTCCC 59 100872247 100882856 TTCGTGGGAACCTCAAGTC 60 Novel Rattus norvegicus 81 AABR07016919.1 ENSRNOG00000054585 ENSRNOT00000077506 3 1 1 82 15 5048666 5049424 GAGGAGGTCAAAGTTTGATCAG 59 5048605 5048624 TCTCCAAACGCTTCATTCTC 58 Novel Rattus norvegicus 81 AABR07049631.1 ENSRNOG00000059783 ENSRNOT00000083930 3 1 1 99 5 131593528 131593546 ACATACCTTGAGAGCTGCC 60 131593147 131593465 ATCTGGTCCTCGTTTCCTG 59 Novel Rattus norvegicus 81 AABR07017540.1 ENSRNOG00000058949 ENSRNOT00000086339 1 1 1 80 15 26257435 26264489 GATGTCAAGGAACATGGAAGG 59 26264528 26264549 GGTTAAGCTTGTGTTCTCTGTC 60 Novel Rattus norvegicus 81 AABR07062477.2 ENSRNOG00000052597 ENSRNOT00000080805 2 1 1 82 4 179210147 179210165 AACTACCCATGCTCAAGGT 59 179210210 179210603 ATTCAACCTCTGCTCTTCCA 59 Novel Rattus norvegicus 81 AABR07017716.1 ENSRNOG00000053509 ENSRNOT00000086032 1 1 1 84 15 30343238 30343479 TTTGTCTGGATGTATTGTGGC 59 30343174 30343192 GTCCAGGGTGACTTCTTCC 60 Novel Rattus norvegicus 81 AABR07049695.4 ENSRNOG00000057688 ENSRNOT00000077204 1 1 1 90 5 133799382 133801958 GGAAGCACAGTACTGAGGA 59 133802010 133802030 GTATTCATCTGGAACTGCAGG 59 Novel Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 2 1 1 60 4 181676578 181677078 AAGAGTAAACACCCAGGCT 59 181676536 181676555 ATCCTGCCAGTCTCATTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049799.1 ENSRNOG00000054301 ENSRNOT00000083974 1 1 1 81 5 138678470 138678488 GAGTGCAGTCCCATTTCAG 59 138678533 138684795 TGATCTGACACCAGGTGTC 59 Novel Rattus norvegicus 81 AABR07031759.1 ENSRNOG00000059937 ENSRNOT00000079229 3 1 1 60 18 32992379 32997311 GCCATAAAGATACAGCTTACACC 60 32997330 32997349 TTTGCTCAGACTGCTAAGGA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07017912.1 ENSRNOG00000052103 ENSRNOT00000091148 1 1 1 95 15 33942784 33944350 ATGCACATGCAGGTAAGGA 59 33942707 33942725 AATAGATGGTCTCCGGCAG 59 Novel Rattus norvegicus 81 AABR07001623.1 ENSRNOG00000061719 ENSRNOT00000089974 3 1 1 63 1 54325036 54325054 GAGTGCTACAAACCAGGTC 58 54325343 54325361 GAGGGTGACAGATCTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049962.1 ENSRNOG00000057617 ENSRNOT00000079472 2 1 1 69 5 146346335 146346353 CTAGAAGAACCAGGTGCCA 59 146348781 146348799 TCTTCTCCGACAATGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050052.1 ENSRNOG00000059520 ENSRNOT00000087877 1 1 1 60 5 149264576 149264595 AAGCATCAGAATCCTGGGAC 60 149264618 149264636 AAAGAGATCGAGAAGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050052.1 ENSRNOG00000059520 ENSRNOT00000087877 2 1 1 60 5 149264576 149264595 AAGCATCAGAATCCTGGGAC 60 149264617 149264636 AAAGAGATCGAGAAGCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001700.2 ENSRNOG00000059261 ENSRNOT00000082731 3 1 1 83 1 55376028 55377020 CTTGGCTAAGGAATGGCTC 58 55375963 55375981 TAAGTGAAAGTTGGCCGTC 58 Novel Rattus norvegicus 81 AABR07063575.1 ENSRNOG00000061601 ENSRNOT00000086586 2 1 1 72 6 35788225 35788243 CTGCCTCTGAGTCACTCAG 60 35790434 35790455 GACTTGTTCAGCAAGTTTACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001926.2 ENSRNOG00000051875 ENSRNOT00000090676 3 1 1 85 1 62208083 62223194 AGCAATAGATTCTGGGTGCT 59 62208017 62208035 AGATACACAGGTGACCGAG 59 Novel Rattus norvegicus 81 AC111678.2 ENSRNOG00000057425 ENSRNOT00000077181 3 1 1 82 18 52069543 52069562 CACAGGAGACTGTGAGATCC 60 52069606 52083371 GCAACAATTCAGGTCTTCCC 60 Novel Rattus norvegicus 81 AABR07018226.2 ENSRNOG00000060608 ENSRNOT00000078520 3 1 1 61 15 47938717 47938735 CTTGTCAGCAGACAGTGTC 59 47938555 47938573 GGGAATGAAGGTGAGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050288.1 ENSRNOG00000057085 ENSRNOT00000084042 3 1 1 96 5 159805228 159805246 CAGCTACATGAACTTGCCC 59 159805305 159808019 CTGTAGTGAGATCCTTGCGA 59 Novel Rattus norvegicus 81 AABR07018342.1 ENSRNOG00000060189 ENSRNOT00000086746 1 1 1 69 15 53092980 53092999 GTATGCAATGTGTAGGGCTG 59 53095991 53096009 GATAGCCATGGCTACTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050415.1 ENSRNOG00000055071 ENSRNOT00000078178 1 1 1 80 5 164240325 164240344 CTTCCTTAAGCTGCAGTTGC 60 164235719 164240283 ATATCATGGGTTCTGGCAGG 60 Novel Rattus norvegicus 81 AABR07002493.1 ENSRNOG00000061661 ENSRNOT00000082654 1 1 1 103 1 75636387 75645101 GTCCATTTGGCTTGGAGTC 59 75645168 75645186 CAAATGGAAGACGTCCGAC 59 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 2 1 1 73 18 64304034 64309479 GGCCCTGACCTTTATGGAG 60 64309511 64309534 CTTAGTCTGTTGTATTGAAGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063743.2 ENSRNOG00000054777 ENSRNOT00000083510 2 1 1 80 6 45470728 45470747 GAGTGTTCAAATGCCTGAGC 60 45469152 45470690 GGAGTCTATAAAGACCTCTGATGG 60 Novel Rattus norvegicus 81 AABR07063767.1 ENSRNOG00000056240 ENSRNOT00000082225 1 1 1 80 6 46950308 46958584 GAGGAAGAGGAAACTGCCT 59 46950246 46950266 TGGTAAAGCTTTGAGTTCCTC 58 Novel Rattus norvegicus 81 AABR07032518.1 ENSRNOG00000060022 ENSRNOT00000084630 3 1 1 86 18 69682800 69682818 AGAATGTTCACCTCGTCCA 59 69681085 69682752 TAGGGTCTCCTTCATTCACAG 59 Novel Rattus norvegicus 81 AABR07032520.3 ENSRNOG00000057598 ENSRNOT00000087490 3 1 1 65 18 69831319 69831337 AGGTCTTCTCGAATGTGCC 60 69830982 69831000 GTTCTTATGACAGCGTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051249.1 ENSRNOG00000057097 ENSRNOT00000081712 1 1 1 106 3 3434925 3438846 GCTTCAAGGATCTTCCCTC 58 3438916 3438934 CTAGGTAGGACAGAGCCTG 58 Novel Rattus norvegicus 81 AABR07063863.1 ENSRNOG00000058673 ENSRNOT00000089403 2 1 1 80 6 52962482 52969240 CCACATCGATGGTGTACAC 58 52962420 52962438 TTGGGCCTCTATGTAGTGC 59 Novel Rattus norvegicus 81 AABR07051321.1 ENSRNOG00000061920 ENSRNOT00000087635 3 1 1 81 3 4894664 4895534 TGAGATCCAGGTGTACAGAC 59 4895577 4895596 CCGTTGGAAGTAGGTAAAGG 58 Novel Rattus norvegicus 81 AABR07019116.2 ENSRNOG00000058401 ENSRNOT00000087558 1 1 1 80 15 89807758 89807777 GAAGAATCATGGCATCTCCA 58 89806956 89807715 CTTTGCTTCTTCCACTGCA 59 Novel Rattus norvegicus 81 AABR07032642.1 ENSRNOG00000057908 ENSRNOT00000091137 3 1 1 64 18 75847168 75847186 AGGTAACATCGTGGTCCTG 59 75847214 75848287 CCGTGATTCCCAGAAACTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 2 1 1 60 6 67771811 67771830 TTTCCTGGCAATTTAGACCT 57 67771850 67775149 TCATCAAGTGTAAGAGGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC127118.1 ENSRNOG00000054696 ENSRNOT00000085546 3 1 1 101 18 79590297 79590315 GTTTGCATCACACTGGGAG 59 79590380 79590510 TTCACGATGAAGTCACCCA 59 Novel Rattus norvegicus 81 AABR07019334.1 ENSRNOG00000061865 ENSRNOT00000086389 2 1 1 80 15 100149038 100149056 GAAGAAACAACGGACTCCA 58 100145174 100148996 CAGGAGATCTGAGTATCTTGC 58 Novel Rattus norvegicus 81 AABR07003001.1 ENSRNOG00000052011 ENSRNOT00000092128 2 1 1 81 1 92233725 92238144 GCTCCCTTTGAGTGTATTAGG 58 92238187 92238205 ACAGACTGTTTCAGGTCCA 59 Novel Rattus norvegicus 81 AABR07051438.1 ENSRNOG00000060208 ENSRNOT00000082735 1 1 1 80 3 11277974 11277993 GGTTAGGACCTTCCCTATGC 60 11278034 11278802 TCAGGATGTGTCTTGAAGGAG 60 Novel Rattus norvegicus 81 AABR07032806.1 ENSRNOG00000052865 ENSRNOT00000089224 1 1 1 80 18 82756737 82784794 AGATACAGGAGTTGCTGCC 60 82756675 82756694 TCAGAACTAGCCGTGTAGAG 59 Novel Rattus norvegicus 81 AABR07051515.2 ENSRNOG00000059518 ENSRNOT00000088402 3 1 1 91 3 14699896 14705331 ACTCACTGATTTGATGTGGC 59 14705385 14705403 AGTCATTCTTCCACTGCGT 59 Novel Rattus norvegicus 81 AABR07019437.4 ENSRNOG00000055566 ENSRNOT00000089537 1 1 1 120 15 105550887 105550907 CTCTGAAGTTGGACTACTGGA 59 105550989 105551927 GTAAGAGGATCGGGCAGAC 60 Novel Rattus norvegicus 81 AABR07051666.1 ENSRNOG00000055767 ENSRNOT00000083837 3 1 1 81 3 18996928 18997165 AATTAGTGCCACAGTCATAGTG 59 18997207 18997225 CTTCCCAGGAGATGTAGCC 59 Novel Rattus norvegicus 81 AABR07033285.1 ENSRNOG00000058475 ENSRNOT00000090964 1 1 1 62 11 15669848 15669866 AAGAGAAGACACCACCTCC 59 15629596 15629617 CCTTAAGTTCTTCTTTCCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019814.1 ENSRNOG00000055258 ENSRNOT00000088977 2 1 1 89 13 4255765 4261512 AGATCTTCTTCCACGAATTGTG 59 4261556 4261580 GGAGAAGAACTCAGTTTATAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 1 1 1 87 1 95240941 95240959 AACAATGACAACAGCAGCA 59 95241010 95241716 TCTTGGGTCCAAGATAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033292.1 ENSRNOG00000060259 ENSRNOT00000079502 3 1 1 67 11 16276013 16276031 CATTTGGTTGCTGATGGCA 59 16274833 16274853 TCAGCTCTGAGATTACAACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.1 ENSRNOG00000053427 ENSRNOT00000089780 2 1 1 84 1 97063598 97063616 TAGAACAAGGCAGGATTCG 57 97063662 97065891 GTCGAAAGTTCATAACGTCAG 57 Novel Rattus norvegicus 81 AABR07003167.1 ENSRNOG00000053427 ENSRNOT00000089780 3 1 1 84 1 97063599 97063617 AGAACAAGGCAGGATTCGA 59 97063662 97065892 AGTCGAAAGTTCATAACGTCAG 59 Novel Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965,ENSRNOT00000089993 1 3 3 60 11 27574244 27574262 AACTGAGCTACCCAAGACC 59 27575725 27575743 ATCGTACATCCCGATCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033570.1 ENSRNOG00000056730 ENSRNOT00000086624 1 1 1 80 11 28097666 28097684 CGGGTTGCATGTGAATCTC 59 28097724 28160352 CCTTTATTCCCTAGTTGTCAGTC 59 Novel Rattus norvegicus 81 AABR07003304.1 ENSRNOG00000053281 ENSRNOT00000085506 3 1 1 83 1 104424027 104425121 GCTGATGAACAAGAGGATGTG 59 104423964 104423982 TATCACCCTGAGCTTGAGG 59 Novel Rattus norvegicus 81 AC120732.1 ENSRNOG00000056508 ENSRNOT00000087222 3 1 1 67 11 31269696 31269714 CTGCATACTCAAAGGCCTG 59 31270276 31270294 AGTGCTTAACAGCAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.3 ENSRNOG00000060921 ENSRNOT00000087637 1 1 1 80 3 30297852 30297871 GGAGGAGAGGATTTCTGTCG 60 30297911 30300517 CGAGATCTCTTGGAAACTTTCC 59 Novel Rattus norvegicus 81 AABR07003310.1 ENSRNOG00000052766 ENSRNOT00000084269 3 1 1 64 1 105036254 105036272 TAAGCTTGGCAAGTATCGC 58 105036969 105036988 ACTTTCTCTGAGGACTTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 1 1 1 120 3 33946882 33949984 GATGCTCAAGAGTCCCAGG 60 33946780 33946798 TATATGAGCAGTCTCGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 1 1 1 95 11 37475012 37475030 GCTTCAGCACCTTAATCCA 58 37459843 37474953 AAACAGCCTTGATGTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003354.1 ENSRNOG00000052081 ENSRNOT00000089175 3 1 1 82 1 107149581 107149599 TCCAAGAAGAACACAAGGC 58 107144615 107149535 TCATTCGGTGCTTTGAAGG 59 Novel Rattus norvegicus 81 AABR07021199.1 ENSRNOG00000061752 ENSRNOT00000088390 1 1 1 83 13 60313724 60313742 ATGGACTCCCTTCCTACCA 59 60313788 60314034 CATCTGCACCTTACAACACG 60 Novel Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 1 1 1 60 13 69628242 69628260 TTCAGTCTGCAGACTCCAC 59 69628284 69628509 CCCTGAGAGGCAGTAACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021589.1 ENSRNOG00000053653 ENSRNOT00000082244 1 1 1 100 13 79662519 79662538 CATTTGTCTACCACAGCTCG 59 79662601 79663043 TCAATCGAAGGCCCTTGAG 60 Novel Rattus norvegicus 81 AABR07052550.3 ENSRNOG00000059983 ENSRNOT00000089479 2 1 1 80 3 61119563 61120735 CACTGGAGTCCATTACAAGG 58 61119502 61119525 GATGTAGTCACTTACTCACTTAGC 59 Novel Rattus norvegicus 81 AABR07034464.1 ENSRNOG00000054633 ENSRNOT00000087385 2 1 1 60 11 72774789 72774807 AAGCACATCAAGGAAGCAG 59 72774313 72774332 ATGTGGAGATGCCTTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021614.1 ENSRNOG00000061660 ENSRNOT00000086408 1 1 1 80 13 81592096 81592114 TGCATACAGGATCAGCCAG 60 81592158 81593996 TCACAGTCGTAAGGGAGGA 60 Novel Rattus norvegicus 81 AC117091.2 ENSRNOG00000051430 ENSRNOT00000085948 3 1 1 80 13 92264076 92264095 AAGCAGTGACAGATGAAAGG 58 92263903 92264036 TGCGTTGTACTTCCTTATAAGG 58 Novel Rattus norvegicus 81 AABR07052689.1 ENSRNOG00000060563 ENSRNOT00000087442 1 1 1 97 3 69355020 69355039 ACAAGAGCTTCAACACTCTC 58 69355096 69359467 GAGTTTCTTTCCTATCCCTCTC 58 Novel Rattus norvegicus 81 AABR07071917.1 ENSRNOG00000057496 ENSRNOT00000078442 1 1 1 80 1 128398438 128398456 TACTCCAGGACAGGAAACG 59 128418792 128418810 CTAGGGAAGAAGCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072264.2 ENSRNOG00000052689 ENSRNOT00000089244 1 1 1 80 11 86921979 86923571 AAGCAAAGGAATGGCAAGAC 60 86921918 86921936 AGTACTGGGCTCTGTACCT 59 Novel Rattus norvegicus 81 AABR07065504.1 ENSRNOG00000051387 ENSRNOT00000083887 2 1 1 93 6 132464332 132464995 CCTTCCGAAGAGGTTCCAG 60 132465051 132465070 TTGTCTGGAGAAAGACTCCG 60 Novel Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 1 2 2 86 6 133668571 133676832 GGAATAGGCCAACATCGTC 58 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07004221.1 ENSRNOG00000051696 ENSRNOT00000086793 2 1 1 104 1 130652247 130652265 AATATCGTGGTTGCTCTCC 57 130651257 130651275 AAAGTCTGGCTACAAAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034795.1 ENSRNOG00000052746 ENSRNOT00000091222 3 1 1 81 11 89832359 89834258 GTAATAAAGCTGAAACACGGC 58 89834297 89834319 GTGATCATTGAGGTCTTCTACTC 59 Novel Rattus norvegicus 81 AABR07004254.1 ENSRNOG00000053587 ENSRNOT00000086737 2 1 1 87 1 134029112 134030287 AAGGTCTCCATATTCCTATAGGC 59 134029047 134029065 TGTAGCATGGTGGGTTGAG 60 Novel Rattus norvegicus 81 AABR07022072.2 ENSRNOG00000058959 ENSRNOT00000087282 2 1 1 60 13 105852679 105852697 CACAAGTCTGTCTCCTGGG 60 105847959 105847977 CTCTAAAGGGCTCCAAACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035190.1 ENSRNOG00000061668 ENSRNOT00000084891 1 1 1 80 12 6544698 6550538 CCTATAACCGGACAGACTGAC 60 6550580 6550598 GCAAAGTTCAGAAGGGTCC 59 Novel Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 1 1 1 79 3 93435881 93435899 AAATTCAGGCAACAGCAGG 59 93435942 93436790 GCCTTCTTTCCATCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 2 1 1 80 3 93435880 93435898 GAAATTCAGGCAACAGCAG 58 93435942 93436790 GCCTTCTTTCCATCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035307.1 ENSRNOG00000060644 ENSRNOT00000081526 2 1 1 80 12 10017437 10019461 CCACTTTCCAGAATTCAGATGAC 60 10017379 10017398 TCTCGACTCCACTGATTTCG 60 Novel Rattus norvegicus 81 AABR07024580.1 ENSRNOG00000052302 ENSRNOT00000084561 2 1 1 60 16 6690605 6690623 CCTTTCAAAGCCCACACTG 59 6689307 6689326 CAAATAGGTAGGGAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035412.2 ENSRNOG00000054485 ENSRNOT00000080876 2 1 1 113 12 13803484 13803503 CTTCCTCATTCGCCTAAGAG 58 13802833 13802851 CTTTCCATATCCCTGCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004495.1 ENSRNOG00000055810 ENSRNOT00000079518 3 1 1 100 1 146347125 146347724 CATAAGCCTCAAATTACCTAGCTC 60 146347048 146347066 CACCCGGTGAAATGTTGTG 60 Novel Rattus norvegicus 81 AABR07024653.1 ENSRNOG00000055677 ENSRNOT00000085561 3 1 1 80 16 10343903 10351105 TTACTTCGTCTTTGACAAGTCC 59 10351143 10351164 TATTTCTCCACCAAATCTTCCC 58 Novel Rattus norvegicus 81 AABR07024786.1 ENSRNOG00000059262 ENSRNOT00000084434 1 1 1 80 16 16473054 16473073 GCGTATTGTCTCAATGACGG 60 16455731 16473011 TGTGCACAAGAATCGACAG 59 Novel Rattus norvegicus 81 AABR07024802.1 ENSRNOG00000051830 ENSRNOT00000077235 3 1 1 80 16 17435905 17456246 GAAGATAAGTCTTGACTCAGCA 58 17456285 17456305 TTACCTGTTGAAGTGGAAGTG 58 Novel Rattus norvegicus 81 AABR07004783.1 ENSRNOG00000059114 ENSRNOT00000082580 1 1 1 80 1 156493540 156506095 ACTTCTGGACTACCATCGTG 59 156506138 156506156 TTCTTGTCCCTCAGCTTCC 59 Novel Rattus norvegicus 81 AABR07024814.2 ENSRNOG00000058160 ENSRNOT00000086688 1 1 1 64 16 17941337 17941356 GAAGCAGAACATTGAATGCA 57 17961899 17961917 GAGGACTTCAGGAAAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07024814.1 ENSRNOG00000056192 ENSRNOT00000077288 1 1 1 63 16 18022524 18022542 TCACCTAGGAATCAGCCAG 59 18021887 18021906 ACCAATGACGTATTCATGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07004876.2 ENSRNOG00000053276 ENSRNOT00000084807 1 1 1 77 1 164815956 164815975 GGGTCTTCTTCCTTGAAGTG 58 164823246 164823264 GGAGGACCTCCTAAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053814.1 ENSRNOG00000059431 ENSRNOT00000088942 1 1 1 88 3 127674599 127674617 TAATCGTGTTGCTGCTGAG 58 127674669 127677083 GTAGATGAGGAGCTGGGTC 59 Novel Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 2 1 1 90 9 26953194 26953212 TCGAAGCTGTAGGAGTAGG 58 26952793 26953140 AGTCGATCACATTGGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000080625 2 1 2 80 16 31172101 31172203 AAAGGATCAGATCAGGTTCCT 59 31171900 31171920 CTGGCCCTATTTATCCTCTCC 60 Novel Rattus norvegicus 81 AC128610.1 ENSRNOG00000051795 ENSRNOT00000087917 3 1 1 80 1 185578911 185578930 GAAGATCCATGTCTTGTGGG 58 185578973 185626758 ACATTCCCTTTGTTCCAGC 58 Novel Rattus norvegicus 81 AABR07035888.1 ENSRNOG00000059259 ENSRNOT00000088837 3 1 1 82 12 26703989 26704010 TTCTGGACCTGAATGATACCTG 60 26704052 26709574 GGGAAGGACCTCAAGATCTG 60 Novel Rattus norvegicus 81 AABR07005593.1 ENSRNOG00000054843 ENSRNOT00000080401 1 1 1 80 1 189698797 189698818 GACAGATCACTACTACATTGCT 58 189697265 189698758 AGGTACTCAATGTATGACTGG 57 Novel Rattus norvegicus 81 AC136867.1 ENSRNOG00000055554 ENSRNOT00000083571 2 1 1 82 12 31299108 31299637 TATCTGAAGCGAGCTGATCC 60 31299682 31299700 ACAAGACAGGATGCTCTGG 59 Novel Rattus norvegicus 81 AC111428.1 ENSRNOG00000055430 ENSRNOT00000082569 1 1 1 81 3 148057940 148061791 CTGAACTACAACCTCTAAACACAG 60 148061831 148061849 GCAAATTTCCCAGGTCAGG 59 Novel Rattus norvegicus 81 AABR07005779.5 ENSRNOG00000057003 ENSRNOT00000084011 3 1 1 81 1 198407929 198407949 CATATGAATCCTATGCCCGAC 59 198407634 198407888 TCTTGGTGAAGAACACATGTC 59 Novel Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 3 2 2 83 1 200364477 200364498 TCTGTAAAGTCACCAAGATTGC 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07036331.2 ENSRNOG00000057941 ENSRNOT00000090171 1 1 1 80 12 38874346 38874364 ACAGTAGACACTCCTTGCT 58 38874405 38878011 AATTCACTTCTTAGTGGGAAGG 58 Novel Rattus norvegicus 81 AABR07005871.1 ENSRNOG00000061037 ENSRNOT00000088506 2 1 1 80 1 203452448 203452950 CACTCACAGATGGTTGGAC 58 203452386 203452404 ATGATGGGTCCAGTAGCTG 59 Novel Rattus norvegicus 81 AABR07026048.1 ENSRNOG00000058880 ENSRNOT00000083953 2 1 1 85 16 61217792 61217810 GGACTTCATGCATGCAAGG 60 61217858 61218169 GTCGAGTGGCTTTATTTGGT 59 Novel Rattus norvegicus 81 AABR07036417.1 ENSRNOG00000056261 ENSRNOT00000083958 2 1 1 60 12 42646953 42646972 CAGTTTCACGTCTTGCTCTC 59 42642390 42642408 GTTCCTCATCCGTCTTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 2 1 1 63 3 160964929 160972965 AGAGGCTTGGAAATGGAGAG 60 160972991 160973009 AGTGCTCTTGACTGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC113785.3 ENSRNOG00000060104 ENSRNOT00000078332 3 1 1 86 16 69029560 69029579 GTAGATCTCGCCAAGTTGAC 59 69029626 69030432 CAAATAGGTGTCCATTACGGT 58 Novel Rattus norvegicus 81 AABR07067871.1 ENSRNOG00000057686 ENSRNOT00000083802 2 1 1 111 9 69695915 69695933 ACACTTCAGGCATCTGACC 60 69696007 69697277 CATTCTTGTTACCTGCTGCA 59 Novel Rattus norvegicus 81 AC141169.1 ENSRNOG00000054948 ENSRNOT00000084821 2 1 1 136 9 69991265 69991283 AAGACAAGACGTAGCAGCT 59 69987089 69987107 TCACTCAAGCTGCACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026441.2 ENSRNOG00000059780 ENSRNOT00000081562 1 1 1 60 16 76772700 76772720 CAGGATGTGTAGGTTGTAGAC 58 76763670 76763689 TGTATTTGTCAGGTTCCGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026441.2 ENSRNOG00000059780 ENSRNOT00000081562 2 1 1 60 16 76772699 76772718 GGATGTGTAGGTTGTAGACG 58 76763668 76763687 TCTGTATTTGTCAGGTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026483.1 ENSRNOG00000054984 ENSRNOT00000085058 3 1 1 80 16 78273406 78340658 CTCTGTCTTGACCCAAGGAG 60 78340701 78340719 GCTCTTCTGCCATTGTCTG 59 Novel Rattus norvegicus 81 AABR07054809.1 ENSRNOG00000052782 ENSRNOT00000091217 3 1 1 62 3 169966069 169966088 ATTTATTCCAGCAACGGCTG 59 169966194 169966213 TCATTCTGAAGCAGAATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054818.1 ENSRNOG00000058392 ENSRNOT00000085442 1 1 1 80 3 170477927 170477948 TTCAGAGTAGAGAAACAGTGGG 60 170477988 170479105 GGGTTGAGTGTACTTCTCCA 59 Novel Rattus norvegicus 81 AABR07068094.1 ENSRNOG00000052509 ENSRNOT00000078476 2 1 1 80 9 83398645 83398802 GGTATTCAGCAGGTCTTGGT 60 83398845 83398863 GTTGAAGGTTCTGGTCCCA 60 Novel Rattus norvegicus 81 AABR07026499.3 ENSRNOG00000061042 ENSRNOT00000077817 3 1 1 74 16 79078627 79078645 CTGAAACAGCCAATTGGAC 57 79074478 79074498 CTCAACTTTGACTGGAAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006428.1 ENSRNOG00000055431 ENSRNOT00000079050 2 1 1 60 1 233254965 233254984 GGCACTTCATATCCAAACCA 58 233254924 233254944 TACTGTTTCTGAGGAAGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037899.1 ENSRNOG00000056843 ENSRNOT00000091339 2 1 1 86 X 35198780 35198798 TGACCCAGATATTGTGGGA 58 35197114 35198733 TCTGGTATTTCCAAATTGGGAG 59 Novel Rattus norvegicus 81 AABR07006475.1 ENSRNOG00000058389 ENSRNOT00000088585 3 1 1 248 1 236547630 236547648 TGAATCCTTCCGGGAACAC 60 236577319 236577337 TGATGACATGTCCCAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068248.2 ENSRNOG00000060101 ENSRNOT00000079973 2 1 1 80 9 92547736 92548021 ACCAAGGACCAACAGATCC 59 92547674 92547693 AGAGCCACAGTAGAGTTCAG 59 Novel Rattus norvegicus 81 AABR07055812.1 ENSRNOG00000055912 ENSRNOT00000084358 1 1 1 129 7 10265083 10265101 TTGTACAATCGAGGGACCT 58 10266038 10266059 CTTGTTGATCTCATCAGTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07039133.1 ENSRNOG00000055432 ENSRNOT00000085077 1 1 1 86 X 69033064 69033082 ATTCTGCAGGATCCGTTCC 60 68998565 69033015 GAAAGAGCTCCAATCCAGGA 60 Novel Rattus norvegicus 81 AABR07039133.1 ENSRNOG00000055432 ENSRNOT00000085077 3 1 1 90 X 69033069 69033087 TCTCCATTCTGCAGGATCC 59 68998566 69033015 AAAGAGCTCCAATCCAGGA 58 Novel Rattus norvegicus 81 AABR07006654.2 ENSRNOG00000059909 ENSRNOT00000080454 1 1 1 89 1 244447164 244447809 GCTACAAAGAAGACAACTGCA 59 244448318 244448336 TTGTCTTCCCATGCAAGGA 59 Novel Rattus norvegicus 81 AABR07006656.1 ENSRNOG00000053506 ENSRNOT00000084842 3 1 1 80 1 244977938 244977957 TGAACATGTCAACTGGAACC 59 244977996 244980814 GATCAGCTCTTATCTAGGAGGTC 60 Novel Rattus norvegicus 81 AABR07068350.1 ENSRNOG00000057530 ENSRNOT00000088137 1 1 1 80 9 100261094 100261113 TTTCCCGATACGGTCATAGG 59 100259624 100261052 GTTCAAATGCCTTTCCAAGC 59 Novel Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 1 1 1 79 9 106784552 106784572 AGGATGTGTCTCATTGTACTG 58 106734761 106784511 AAATGACCGGAAAGTGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026971.1 ENSRNOG00000054646 ENSRNOT00000081789 3 1 1 97 17 7875653 7875671 GGAATTGGAAGCAGACAGG 59 7875225 7875243 AATGGAACTGGGCTAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC123495.2 ENSRNOG00000055653 ENSRNOT00000091034 2 1 1 80 1 251824334 251825664 GTACTTACAAGGGTGGAACAG 58 251825705 251825724 TTCAGAAAGTCCTTGCAGTG 59 Novel Rattus norvegicus 81 AABR07056423.1 ENSRNOG00000057870 ENSRNOT00000085739 1 1 1 60 7 24715135 24715153 GTCCCGAAACACTTCAGGA 60 24707461 24707480 CTGTTGCGTCCTTGATACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040629.1 ENSRNOG00000052831 ENSRNOT00000080500 1 1 1 84 X 106749564 106749582 TATCTCCGTGAAGGAAGGC 59 106748244 106749516 ACAGACTTGAAGACCTGCC 60 Novel Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 1 1 1 87 1 259107349 259111310 GATCGGTCTTCCCAAGGAG 60 259111360 259111379 TCTTCTCCTTACTGTCACGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027028.1 ENSRNOG00000056293 ENSRNOT00000091958 3 1 1 80 17 11605353 11605372 AGACTTGACGACAACAAGTG 59 11602372 11605313 TTCTGATACCATCACTTTCTGG 58 Novel Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 1 2 2 80 8 4890736 4896592 TAGGTATTTGGCTGGTCTGC 60 4890675 4890693 CTCCATAGGCTAGCAGCTG 60 Novel Rattus norvegicus 81 AABR07042781.1 ENSRNOG00000055209 ENSRNOT00000079514 3 1 1 80 19 8354974 8354994 GAAACTCCATGTGAGAAGGGA 60 8355033 8356720 CATCTAGTGTTTGCACCTTCTC 59 Novel Rattus norvegicus 81 AABR07056769.1 ENSRNOG00000055033 ENSRNOT00000077565 3 1 1 82 7 40553714 40553734 TGGTTTCCTTATGAGTTGTGG 58 40553778 40559361 GCTCTGTATCTGGTGTGAG 57 Novel Rattus norvegicus 81 AABR07027263.1 ENSRNOG00000051502 ENSRNOT00000081422 2 1 1 87 17 21834947 21863541 GTCTAGCAGATGTTTCGTTGG 59 21863590 21863608 GTTACAAAGAAGCGTGCGT 60 Novel Rattus norvegicus 81 AABR07042999.1 ENSRNOG00000058341 ENSRNOT00000084464 2 1 1 118 19 15844908 15844926 TATCCTTCAGCTTCCTGCA 58 15845465 15845483 ATGTGAATTCCTCCCGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056882.1 ENSRNOG00000054680 ENSRNOT00000090648 3 1 1 86 7 44983943 44983964 GGAAACATACACAGAAGTTCTC 57 44946771 44983898 CATGTCTTTGATGTTCTCCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043028.1 ENSRNOG00000059724 ENSRNOT00000082309 2 1 1 86 19 17755223 17756103 TGATATGGGTTTGTGCTGG 58 17756153 17756171 AGAACAGAAGACAGGGTCC 59 Novel Rattus norvegicus 81 AABR07069235.1 ENSRNOG00000056348 ENSRNOT00000090990 2 1 1 89 8 14192099 14192117 AAGTTGTTCTCATGCCAGG 58 14200878 14200898 GCGTTGTTCATATCTGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006925.1 ENSRNOG00000056850 ENSRNOT00000089632 2 1 1 90 1 271769391 271771578 AGCTGAAAGTTCTGTCATCAG 58 271769321 271769339 ACCAGTTCGTTGCTAAGTC 58 Novel Rattus norvegicus 81 AABR07027371.1 ENSRNOG00000056603 ENSRNOT00000077509 2 1 1 80 17 26845957 26849228 CTCACAGAGGCTAAGGATCC 59 26845896 26845914 GGCTTTGTGTCCACATACC 59 Novel Rattus norvegicus 81 AABR07006957.1 ENSRNOG00000061600 ENSRNOT00000089277 1 1 1 80 1 273059543 273059562 AATTTCTCAGACAGGACTGG 57 273059605 273060293 CTCTCCAAAGTGTGCTCTC 58 Novel Rattus norvegicus 81 AABR07043108.1 ENSRNOG00000057049 ENSRNOT00000078652 2 1 1 92 19 21619378 21619397 TTTCATTTCAAGAGGCAGGC 59 21619452 21623408 CTGTCCAGCCTACTAGAGG 58 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 2 1 1 80 7 62236168 62236949 CTTCCTTCCTCATGGACGG 60 62236993 62237011 TCTTCAGTCTTGAGCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057237.1 ENSRNOG00000059128 ENSRNOT00000082384 2 1 1 81 7 62335314 62335332 ATAGCTTGAACTCTCCCGA 58 62335375 62340583 AGCTTTCTTCGTCAAGATCTC 58 Novel Rattus norvegicus 81 AABR07043389.1 ENSRNOG00000052109 ENSRNOT00000074264 3 1 1 68 19 27984656 27984674 CCTGATGACCAACATCCTG 58 27984486 27984504 ACATAATGAAAGGCGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 1 1 1 60 17 37332685 37337128 TGCAGAAGTTGGACTCAGAG 60 37337151 37337169 CTCAGTGGAAGACTTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 3 1 1 74 8 40036751 40036770 AGTCTTACGACGGAACTGTC 60 40034221 40036714 GTTGATTCACCGCAAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC106702.1 ENSRNOG00000055842 ENSRNOT00000091855 3 1 1 61 19 32179514 32183464 ACACAACAGAGGAAGATCAG 57 32179472 32179491 TTTGTCGTGATGGTCAAGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000085269 3 1 3 156 10 23560 23578 CTACCTCATTGAGGTCCGG 59 16274 23440 CTGTGGCATGATGTCTCCA 60 Novel Rattus norvegicus 81 AC127140.1 ENSRNOG00000058510 ENSRNOT00000091087 1 1 1 80 2 8880223 8882413 TACCTCAAGACTACTTGCCA 58 8882456 8882474 TCCTCTTGGAAGTCAGAGC 59 Novel Rattus norvegicus 81 AABR07028945.1 ENSRNOG00000052005 ENSRNOT00000079837 2 1 1 85 10 377255 377274 TTCGTGAAGCCAAGAAACAC 59 377321 381677 ATACAGAGGAGTGTCACAGC 59 Novel Rattus norvegicus 81 AABR07070078.1 ENSRNOG00000060536 ENSRNOT00000081870 1 1 1 81 8 48088891 48093653 AGGCATGACATTAGTGGAGAG 60 48088830 48088848 GTTCATCTGGTTGGTCCCA 60 Novel Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 1 1 1 77 8 48308935 48379611 GATGAAATGACAGAAGACGTCTG 60 48308880 48308898 TAATGCTTCCGTTTGCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC107174.1 ENSRNOG00000059210 ENSRNOT00000086618 3 1 1 82 8 48401650 48401668 TCACTGAGATGGGAGACCT 59 48400793 48401605 CTCTGTGAAGCCTTGTTCTG 59 Novel Rattus norvegicus 81 AABR07057798.1 ENSRNOG00000056050 ENSRNOT00000087238 2 1 1 82 7 88033201 88071262 ACTTTAGGACAAGGTTAACAGG 58 88033140 88033158 ACTGGTCAACCGTAGTGAG 59 Novel Rattus norvegicus 81 AC112557.2 ENSRNOG00000057691 ENSRNOT00000078804 2 1 1 68 8 48565081 48565099 ATGTTCTTTATGGCCTGGG 58 48565131 48567078 TTCCTGTCTTAATGCGAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070099.1 ENSRNOG00000058295 ENSRNOT00000082176 3 1 1 80 8 52235402 52239796 ATGAGGATGTAGCCTCTCC 58 52235340 52235359 CAACCTTCTGCGTTCTACTC 59 Novel Rattus norvegicus 81 AC111369.1 ENSRNOG00000053789 ENSRNOT00000086750 2 1 1 80 10 16948889 16949132 GTGGCTTCTCGAGAATCAC 58 16948827 16948845 GGTGACACAGATGTCTGTC 58 Novel Rattus norvegicus 81 AABR07058167.1 ENSRNOG00000052211 ENSRNOT00000077182 2 1 1 81 7 103150050 103150070 CTCACGTAGAAAGAACAAGCT 58 103149001 103150007 AACCAAAGTACCTTGGCTG 58 Novel Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 3 1 1 60 X 129561485 129561506 AGGAATTACAATAGCCAGAGTC 58 129482884 129561470 CTATCTCTTGAGTAGATTTCTCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 3 2 2 81 10 35049329 35053147 CAGACAATGACAGACCTTCC 58 35049267 35049286 TCTGTTCTCTAAGCCAGGAG 59 Novel Rattus norvegicus 81 AABR07042301.1 ENSRNOG00000061805 ENSRNOT00000090347 3 1 1 83 X 152194206 152194224 GGACATTATCAGAGCAGCA 57 152194271 152195079 ACCAGTAACCTAGACTGCT 57 Novel Rattus norvegicus 81 AABR07058420.1 ENSRNOG00000056933 ENSRNOT00000088860 3 1 1 91 7 115577725 115587961 CACTCAGGAAGACCACTCC 59 115577652 115577671 AAGTCTTCTCTGCCAGTGAG 60 Novel Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000085401 1 1 2 90 2 28842892 28842910 TATGTCGACAGAAAGCTGC 58 28836885 28836905 GCCAATTCTCTTGTAAGTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07027870.2 ENSRNOG00000061816 ENSRNOT00000085839 3 1 1 82 17 47712631 47712649 GATTTGGATCCGAGTTCCG 58 47711953 47712588 AGTTTGTCAAACATGTCCTCTC 59 Novel Rattus norvegicus 81 AABR07042514.3 ENSRNOG00000061056 ENSRNOT00000085679 1 1 1 141 X 158581706 158581724 ATTCCAGTCCAACTCCAGC 60 158582064 158582082 TTTGCAAAGGTTTCTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042514.3 ENSRNOG00000061056 ENSRNOT00000085679 3 1 1 143 X 158581704 158581722 CGATTCCAGTCCAACTCCA 59 158582064 158582082 TTTGCAAAGGTTTCTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028069.1 ENSRNOG00000057788 ENSRNOT00000087652 3 1 1 82 17 55556331 55557242 AGCTACCACCATGAGACTG 59 55556267 55556286 CAGTTCAGCAGGAAACTACC 59 Novel Rattus norvegicus 81 AC141521.2 ENSRNOG00000053147 ENSRNOT00000091051 1 1 1 82 20 5783096 5783114 CCTCCTGAAGTACCGATGG 59 5782923 5783056 GAACCACATCTATGATCTTCTTCAC 60 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 1 2 2 80 4 106454 107901 GGATAGCTGAGTCACTACCTG 60 107941 107961 GAAGTTCCATGAGAGGATTGC 59 Novel Rattus norvegicus 81 AABR07070518.1 ENSRNOG00000054131 ENSRNOT00000079964 3 1 1 89 8 73534042 73534060 AATGGAGTTCTGTTGAGCC 58 73533176 73533991 ACAATTCGGATCAGAGATCTC 57 Novel Rattus norvegicus 81 AABR07028137.1 ENSRNOG00000056440 ENSRNOT00000077647 2 1 1 94 17 57731433 57731454 GCAAAGAAGGCAGATTAGTCAG 60 57730984 57731378 CATGATCTTCAGCCCTGGA 59 Novel Rattus norvegicus 81 AABR07059024.1 ENSRNOG00000057275 ENSRNOT00000078417 2 1 1 60 4 1983458 1983477 GAGCACTGCTATTCAGAGTC 58 1983417 1983436 TTACTTTCCCAGTCCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028186.1 ENSRNOG00000053465 ENSRNOT00000089697 3 1 1 94 17 59365322 59365508 AAGAATGGGTACAGGCGTC 60 59365563 59365584 TATCTACGTAAGTTCACTGCCA 59 Novel Rattus norvegicus 81 AABR07007896.1 ENSRNOG00000056649 ENSRNOT00000079589 1 1 1 80 2 34006765 34006786 GGCACTAACATGATTAGATTGC 58 33995945 34006727 CACATTTCTTTACCTCTCCTCG 59 Novel Rattus norvegicus 81 AABR07070598.1 ENSRNOG00000055543 ENSRNOT00000090246 2 1 1 80 8 76332855 76333721 TCACATCAGCTAACTGGTGG 60 76332794 76332817 CCTGTATAGCTCTTTAATGGTGTG 59 Novel Rattus norvegicus 81 AABR07059258.1 ENSRNOG00000060937 ENSRNOT00000090966 2 1 1 81 4 12472040 12472059 TCACCATCAGGGATGTTCTG 60 12366396 12471999 GAAATCTCAACTTGCTTGACAC 59 Novel Rattus norvegicus 81 AABR07070714.2 ENSRNOG00000057135 ENSRNOT00000088843 1 1 1 81 8 81465372 81465393 TCAAGAATGGATATAACGGGAC 58 81464679 81465330 TCATCCCATAGCCCTAGAC 58 Novel Rattus norvegicus 81 AC141961.1 ENSRNOG00000052083 ENSRNOT00000082004 3 1 1 96 20 14756043 14768818 TTGATGGAAGTTGTGACAGG 58 14755966 14755985 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AABR07028281.1 ENSRNOG00000054750 ENSRNOT00000090527 3 1 1 83 17 63034065 63034083 GTTTAGCTCCCAGTCACGA 59 63033610 63034020 ACAAAGTCACGTTTCCAACTC 59 Novel Rattus norvegicus 81 AABR07028356.1 ENSRNOG00000056515 ENSRNOT00000084781 3 1 1 80 17 66738217 66738238 TTAACAACACCTCAATGACAGC 60 66738274 66739882 CAGGTGTAAAGTTATCCTCATTCC 59 Novel Rattus norvegicus 81 AABR07008030.1 ENSRNOG00000051672 ENSRNOT00000077151 3 1 1 118 2 39619355 39629031 TGGATCAAAGATGCTGATCCA 60 39629111 39629129 ATGAGCTTTGGTCCCAGAG 59 Novel Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 2 1 1 63 17 72120212 72121731 AAATACGCAAACACATGCC 58 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 3 1 1 63 17 72120212 72121732 AAATACGCAAACACATGCCA 60 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 2 1 1 64 20 24445734 24445753 GAGGTCATCAGAGTAGCCTG 59 24445339 24445710 CAGACAATTACATTTGTCCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044988.3 ENSRNOG00000054791 ENSRNOT00000086519 1 1 1 80 20 30657325 30657346 CTATATCATCTTCCTGGACTGC 58 30657385 30658344 ACTGTGTTACTTTGTAGGAGG 57 Novel Rattus norvegicus 81 AC128293.1 ENSRNOG00000061434 ENSRNOT00000085443 3 1 1 110 4 57779335 57781192 TGGACATTCTGGAAGGGAG 59 57781265 57781284 AAGAAACTGTTGCAACTTGC 58 Novel Rattus norvegicus 81 AABR07060154.1 ENSRNOG00000057552 ENSRNOT00000089567 1 1 1 80 4 59383714 59383735 AAGTGATGTCAGAAGACTTTCC 58 59383776 59401716 TTGCCCAACCTGTAAAGTG 58 Novel Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000083444,ENSRNOT00000082424 3 2 2 121 8 118463905 118463923 ATGATGTCCTTTCCGACTG 57 118464870 118464888 CAGAATTGGTGTGGCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043829.2 ENSRNOG00000051461 ENSRNOT00000078854 2 1 1 93 19 42964791 42964810 TGGCCAATGGTTCAATTCTG 59 42964866 42966572 GACACCAGAGGACATCTGG 60 Novel Rattus norvegicus 81 AABR07071620.1 ENSRNOG00000061859 ENSRNOT00000086230 2 1 1 90 8 124506368 124506386 ATTTGCTTCCGGGACTCTC 60 124506437 124526671 CTTTCTTTATTCTGGCTGAGCC 60 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 3 1 2 155 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131382025 131382045 TCAGGAATTTAGAGGCCACTC 60 Novel Rattus norvegicus 81 AABR07071662.1 ENSRNOG00000059072 ENSRNOT00000081801 2 1 1 83 8 126542738 126567989 TTTGTTCGCCTAGAACACC 58 126568033 126568054 GGTGTTTGCCTATAATTTCAGC 58 Novel Rattus norvegicus 81 AABR07071739.1 ENSRNOG00000051462 ENSRNOT00000086617 2 1 1 80 8 128560284 128560302 CTGGTACATTCCCTGGTCG 60 128560345 128561285 AGTCTCTGTCCATCGTTCTC 59 Novel Rattus norvegicus 81 AABR07058729.1 ENSRNOG00000051866 ENSRNOT00000085329 2 1 1 109 7 135390393 135390412 TGGATGGATACTGATGACCT 58 135389689 135390321 TATTGTAGCAGCTGTGGTG 58 Novel Rattus norvegicus 81 AABR07071762.1 ENSRNOG00000055816 ENSRNOT00000082878 3 1 1 67 8 130139117 130145655 CTTCTATTGTACATAAAGGCTGGTG 60 130145680 130145698 TTTCATCAGGGCTACCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07058785.1 ENSRNOG00000056121 ENSRNOT00000083547 2 1 1 60 7 137383819 137383839 TCTTTAACAACGCCAGAATCC 59 137376035 137376054 GTTCTCACCAACATCCTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.2 ENSRNOG00000061384 ENSRNOT00000080643 2 1 1 80 8 130938917 130941300 TCAGATAGCTGCAGATCTCG 59 130938856 130938876 CTTGTTATCATCTTCAGCGGC 60 Novel Rattus norvegicus 81 AABR07009031.1 ENSRNOG00000061466 ENSRNOT00000081329 1 1 1 81 2 84239630 84239648 GTGGCTACCAACAAGTGAC 59 84230197 84239587 GAGTTATCACAACACTCCCAG 59 Novel Rattus norvegicus 81 AABR07058907.2 ENSRNOG00000059554 ENSRNOT00000082231 3 1 1 62 7 142301436 142301454 ACACTAGGAAGCCAGACAG 59 142301827 142301845 GAGGCCCTGTTTCAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 1 1 1 130 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659612 144677265 ATCTTCAAACTTTGTGCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009373.2 ENSRNOG00000055250 ENSRNOT00000091734 2 1 1 81 2 94866749 94866767 ATTAACAGCGGCCAATGAC 59 94819870 94866706 ATTCACTAGACAACATGGCTC 58 Novel Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 3 1 1 63 2 102164303 102164321 GTGCTCTTAACTGCTGAGC 59 102154181 102164276 ATGCAGAACAAATAGGCCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009599.2 ENSRNOG00000059333 ENSRNOT00000083809 3 1 1 84 2 105283115 105283133 GAGTGGACTCTGATTCCCA 58 105282136 105282154 CACTTAGCTCTTGCATGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009638.2 ENSRNOG00000051963 ENSRNOT00000084802 2 1 1 96 2 106739330 106739350 ACACATTTATGGCAGAAGAGG 58 106741767 106741788 GCATTGTGTCAGTTTAATTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010040.2 ENSRNOG00000055732 ENSRNOT00000084029 3 1 1 82 2 121855417 121855440 GTCTTGTCTCACGATGTAATTGAG 60 121842687 121855376 CTTGGCCTTCTTTCTGCTG 59 Novel Rattus norvegicus 81 AABR07010180.1 ENSRNOG00000055930 ENSRNOT00000085419 1 1 1 80 2 127975756 127978975 CTTGCAGACCATCTGTGAG 58 127979019 127979037 GGATGAAGAACCTTCTGGC 58 Novel Rattus norvegicus 81 AABR07010332.1 ENSRNOG00000058524 ENSRNOT00000090972 3 1 1 81 2 132491799 132492539 GGAGGAAAGTCCTATAGCAGG 60 132491738 132491759 TGACCTTAGAACGTCTTCAGTC 60 Novel Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 1 1 1 60 2 133026458 133028549 TGCAGGAAAGTCCTACAGG 59 133026416 133026439 GTCATCCTCTACCACTTATATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010468.1 ENSRNOG00000052002 ENSRNOT00000086872 2 1 1 89 2 136982438 136983285 TTTCCCACTTGGTGAGGTC 60 136982367 136982388 ACAGTATGCAGTTCTATGAGGA 59 Novel Rattus norvegicus 81 AABR07010500.1 ENSRNOG00000059233 ENSRNOT00000080667 2 1 1 60 2 137453764 137467502 CTCAATGGAAGACAGGTTCC 58 137453723 137453744 TTCTGTCCCATATTTCTGTACC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07011746.1 ENSRNOG00000053955 ENSRNOT00000080573 3 1 1 81 2 167987438 167996086 AGAAAGAAACCCAAAGGAACAG 59 167996127 167996146 TTCTGTCTGTGATGTTCTGC 58 Novel Rattus norvegicus 81 AABR07011996.1 ENSRNOG00000061272 ENSRNOT00000088226 3 1 1 109 2 180878456 180880392 TGTTTGTGGCATTGCAGAC 60 180880463 180880483 GAGTTGTTGAAACCTGAAGCA 59 Novel Rattus norvegicus 81 AABR07012061.1 ENSRNOG00000060178 ENSRNOT00000081543 1 1 1 80 2 184597177 184597195 AACACTGTGACAACACCCA 60 184597239 184599269 TCACTGATGCCCAACTAGC 60 Novel Rattus norvegicus 81 AABR07012081.1 ENSRNOG00000051552 ENSRNOT00000087599 2 1 1 60 2 184915545 184915564 AGTTCTTGGTGACTTCTCTG 57 184916427 184916445 CCCTCAGATTTCTTGCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014118.1 ENSRNOG00000058018 ENSRNOT00000090252 2 1 1 87 14 1439967 1439987 CTAGAAGCTTCACAAGTTGGG 59 1438918 1439918 AGAGGATGGCATCTGACTG 59 Novel Rattus norvegicus 81 AABR07014218.1 ENSRNOG00000057936 ENSRNOT00000086200 2 1 1 78 14 5618439 5618458 TATTTGATGAACCGTCTGGC 58 5650691 5650709 AAGTGCCTTTCCATCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014272.1 ENSRNOG00000051753 ENSRNOT00000077352 2 1 1 80 14 6556738 6556806 ATGGTATACATGCCACGGT 59 6556847 6556868 AGTGATAGGTGCATACTCTGAC 60 Novel Rattus norvegicus 81 AC131411.2 ENSRNOG00000053017 ENSRNOT00000078024 2 1 1 105 14 11321917 11321935 ATGACGATCACCTACAGCT 58 11316947 11316965 CTTGCCTAAGCACCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013304.1 ENSRNOG00000055380 ENSRNOT00000077485 2 1 1 225 2 232650763 232650781 AGGAACAAAGTTCCCACAG 58 232637260 232648327 CTCCTTTCTTGCAGTCCTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013453.1 ENSRNOG00000054662 ENSRNOT00000087460 1 1 1 80 2 237975015 237976384 TTCCTCTGGGTGAACTGTC 59 237976427 237976446 TGATGGGCGATTTACTTGAG 58 Novel Rattus norvegicus 81 AABR07013477.2 ENSRNOG00000059314 ENSRNOT00000091629 2 1 1 80 2 239063760 239063778 AAGATCTGGACGTGTCTGC 60 239063821 239066596 TCTGGCGTTATAGTAGGCTG 59 Novel Rattus norvegicus 81 AABR07013698.1 ENSRNOG00000052331 ENSRNOT00000087623 3 1 1 89 2 251179688 251180987 ACTCTACGGCTTTACCCAC 59 251179617 251179636 TAAGGAGCCAAGGAAGTTGG 60 Novel Rattus norvegicus 81 AABR07013907.1 ENSRNOG00000056191 ENSRNOT00000087260 2 1 1 85 2 262385535 262385555 CCATCATAGAAACCATGTGGG 59 262385602 262386835 GTGGATGTGGTCTGTTTCC 59 Novel Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 2 1 1 143 2 157854847 157854865 CTTCTGATTCGCAAGCTCC 59 157854989 157855008 ATGGATAGAACACAGGTTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 3 1 1 74 14 86711659 86711678 AGAACCTGGATGACTTAACG 57 86711715 86711735 CATTTAGTTCTGACTGCATCC 57 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899 1 1 4 80 3 140225708 140225727 CCTCTACCTGGGAGAATCTG 59 140225770 140227421 AAATCCAGTGACCTTGCCT 59 Novel Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 3 1 1 80 15 43543620 43543638 AATAGGAGATGGAGGCCAG 58 43543683 43543701 CTTAGCATGCTAGCCAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034131.1 ENSRNOG00000058877 ENSRNOT00000083966 3 1 1 73 11 54829718 54829736 TGAGGTCATGGCAGATCTG 59 54829787 54829806 GGAAAGGAAAGAGGAGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_0863.2 ENSRNOG00000051077 ENSRNOT00000082286 2 1 1 80 6 76685802 76700294 CGACAGCATTGTGAGAGTG 59 76700335 76700356 CTCAAGCCTTCTTATCTTCTCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051505 ENSRNOT00000087515 2 1 1 60 4 53467631 53467650 CTGTGTCTCTTGTGCATCAG 59 53467590 53467611 ATACTGGGCATAGATGTATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057486 ENSRNOT00000082816 1 1 1 60 4 170258215 170258233 GGCAAGATCTGTTCTCGTC 58 170258254 170258275 AATATGCGGTCTTCAGATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000055091 ENSRNOT00000086834 3 1 1 60 17 14226231 14226252 AGTTACCTCAGTTGATTGTCCA 60 14226192 14226211 GGGAAAGCACAGAGTAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061653 ENSRNOT00000077241 2 1 1 60 17 80531864 80531885 CTAAAGGTATCGCCTCTTTGAC 59 80531905 80531924 GACTGCTTTAGCAAGGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061653 ENSRNOT00000077241 3 1 1 60 17 80531867 80531885 AAGGTATCGCCTCTTTGAC 57 80531909 80531927 TTGGACTGCTTTAGCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887 1 1 5 92 6 114780409 114966731 GAATACTCTAAATACAGTCTCCACG 59 114770909 114780362 ACACATTGAGTTCCTAAAGGTC 58 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 1 1 3 84 6 104467547 104467565 CAAGTGGACCCGAGATCTG 60 104467613 104475043 TAGCTTCACCAGTGGAAGG 59 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 1 2 3 80 9 4093078 4093098 AACTGGAGTCAGATTCAGACC 60 4093138 4097386 CCATGTTGTCCCTGATTTAGG 59 Novel Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 2 1 1 60 4 101645787 101645807 TTCCTGTTTCTGCTAATGCTC 59 101646208 101646228 TCTGGGTCATCACAACATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 3 1 1 76 1 165284441 165284463 CTCCCACTGATATTTCTAAAGCC 59 165284500 165284518 GTAGAGCAGGAAAGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 3 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395935 CCAAACACCATGAAGAAGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006111.1 ENSRNOG00000020409 ENSRNOT00000027660 2 1 1 80 1 220610812 220610834 CAGATACAGCCCTATCCAGAC 60 220610876 220610894 TCCATTGTCTTTCCGGGTC 60 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000058216 ENSRNOT00000088590 2 1 1 60 1 267567086 267567104 CTTGGAGGTCATGAAGGAG 57 267567128 267567146 CCCATGCTCTGTAACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010061.1 ENSRNOG00000040440 ENSRNOT00000062193 1 1 1 60 2 122190609 122190628 GGAAGAGCACATTATTGCGA 59 122190650 122190669 GATATCAAAGACGTGCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057202 ENSRNOT00000082280 2 1 1 60 5 71444182 71444200 GCTGTGTTACTTGGGTGTC 59 71444222 71444242 AGCACAGACATAGTCTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000091377 2 1 2 80 1 254560178 254560198 TTCTCCATGAGTATCTTCAGC 57 254569907 254570000 TTCAATGAGAGCTCCACAG 57 Novel Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000085393 1 1 4 140 X 73460904 73460928 CCTGAAGAAATAGTTGGAGATACAC 59 73464155 73467011 CAAGTCCATCAAACCAGCTG 60 Novel Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 3 2 4 115 X 73466670 73467008 TTCATGAAGGGTTTGATGGAC 59 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 1 1 1 102 3 145831629 145831648 CAAGGAGGACTTCCATTTGC 59 145831714 145831732 ACAGACCATCATCCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045491 ENSRNOT00000070758 1 1 1 60 1 47042012 47042031 TGCATATGGTCTCATCTGCT 59 47042051 47042072 ATCCACATACTAATCAGACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059689 ENSRNOT00000082568 2 1 1 60 13 91063306 91063327 TGAAGATGGTCTAGTTACACCT 58 91063267 91063286 AGCCAGATCAATGGAATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058060 ENSRNOT00000086965 3 1 1 60 7 20742942 20742960 TCCCAGGAGTGATTACTGC 59 20742981 20743002 CTAGACAACTTTCTAAGGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052341 ENSRNOT00000084070 3 1 1 60 19 56688533 56688556 GATACAGAGAAGATTAGTATGGCC 59 56688574 56688593 GAACGCTTTACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061627 ENSRNOT00000077801 2 1 1 60 18 18835613 18835632 GGTTACTGTGTCACATGTGG 59 18835651 18835673 GAACATATACATGGCCTATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067401.1 ENSRNOG00000052359 ENSRNOT00000078676 3 1 1 121 9 43086369 43086387 AACTTGTTGCTGCACAGAG 59 43086472 43086490 TAGCCTAATAGGCTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.1 ENSRNOG00000052845 ENSRNOT00000084538 1 1 1 169 17 44528337 44528355 GAGGGACAACAAGAAGACG 58 44528488 44528506 TAACCTTGTGGTGGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076399 3 1 2 148 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31265859 31272603 TCTCATTCACCTCTTTCTGAC 58 Novel InUTR Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091 3 1 2 148 1 31264854 31264872 GGAGAAGATCACGCATACC 58 31265858 31267619 CGACAAATACTCTTTCTGACG 57 Novel InUTR Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 3 2 3 81 X 74012058 74014924 GAAGACTGCTGGATACAGC 58 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AABR07065656.4 ENSRNOG00000053312 ENSRNOT00000087351 1 1 2 80 6 139004723 139004743 TACCTGCAAATGAACAGTCTG 59 139004620 139004684 CTGCTGGTCTATAATACCTGTG 58 Novel Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 2 1 1 76 X 157458861 157458881 TACATTCTTCTTGCAAGGGAG 58 157458804 157458827 GTAAAGGGATGGATCTCTATAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 3 1 1 74 20 896887 896909 ATCTCTGCTATACCACTTCTACC 59 896946 896965 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 3 1 1 60 14 71504970 71504988 TGGACCAGAAGCTTACACG 60 71516473 71516491 TTTCCACACGGAAATGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 3 3 3 81 1 19639626 19639644 CACCTGAGTGAAGTCCCAG 60 19639399 19639583 CTGGAGTGTACCTCATAGAGG 59 Novel Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 2 1 1 60 5 111966009 111966032 GTACTGAGGATGGTAATTAATGCC 60 111978194 111978215 TTTCAAGCTCACAAGTTGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 2 1 2 61 4 157753874 157753892 GCGTTCTTTCCATCCACAG 59 157754133 157754151 TCAGGGCTACTGAGAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 2 1 1 60 4 182328934 182328952 TCTGGGAGAAATTCCCAGG 59 182329550 182329568 GAGCTGTATGCAGTCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 2 1 1 64 6 32414979 32415003 CTACTTATAAGCTACATAGTGCCAG 59 32359951 32359969 CTAAGCAAAGGCAGGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 3 1 1 83 1 56541414 56541433 GATAGAAAGCAGATGCGCTC 59 56539436 56539457 GAGGAGTAGGAATTTAAAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 3 1 1 98 1 95240940 95240958 CAACAATGACAACAGCAGC 58 95241708 95241726 TCAGCTCCAATCTTGGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 3 2 3 92 11 27575827 27575845 GAAAGGAGAAGTCAGTGGG 58 27575899 27576284 CATATGATTCATTGCTGGCTG 58 Novel Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 2 1 1 62 3 30111752 30111770 GTGTGAATCCTGCTCTCAG 58 30111920 30111938 GTTTCTGAAGCCAGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 1 1 1 64 3 36633391 36633410 CCGTGACTTTCCATAATGCT 58 36581246 36581264 CCAAGGGTTTAACCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000086587 2 1 2 92 6 119129115 119129133 AAAGTCTCAGGAGAGGAGG 58 119129187 119134201 GCGATTCCTCAGATTAATCAC 57 Novel Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 3 1 1 60 13 65747798 65747822 GTATCAATCCTGACTTCATGTTCAG 60 65750227 65750246 AGCTCTATGAGCTCCAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492 2 1 2 84 9 605115 605253 CATCTCCAGCTTGTGTATGAG 59 605051 605070 GGTCAATGTACTTCTTGGCT 58 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112 3 1 3 88 6 125304523 125306513 GATGGACAAACAACAGACGG 60 125304454 125304473 ATTAGCCACCACTCATAGCC 60 Novel Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 1 1 1 72 1 124929410 124929428 TTGTCTCATCCTCTGTCCG 59 124929093 124929111 GTGGGTACACATCCATCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 2 1 1 60 13 104140336 104140355 GTGGGAAGAAATAACCCAGC 59 104140514 104140532 AAAGCACCAAACACCAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 2 1 1 62 13 107491188 107491206 GAGATGAACGTACGGACAC 58 107501007 107501025 ATCAGTCCTTTGTGCAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 2 2 3 64 3 142297286 142297304 AACAGCTTCTGGTACCCAG 59 142293156 142293175 GCAAACTGGAAGGTACATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 3 1 1 60 3 149259497 149259518 CAGTGAGTTTCTTCTAAAGCCT 58 149258201 149258221 CTAGGTAACTCTTGAGTGTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 3 1 1 65 16 64877669 64877687 CAGAATGGATGTCAACGCA 59 64878361 64878379 CACTCTTCTGAATGCTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 3 1 1 60 9 69756807 69756826 TATCGGTTACTTCTGCCTCG 59 69770262 69770281 CCGAGTGTTCAAAGCTTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 1 1 1 72 X 5824567 5824585 GAAACATGCCTGCCTTTCC 60 5789723 5789741 TTTGCTCCATTTGCTTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 2 1 1 60 X 21946874 21946892 GCCAAATGGGTCATTTCAC 58 21946373 21946392 AAACGTGCTGAGAAATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922 2 1 2 86 16 87443350 87443368 CATTGATCCCACACCTGAG 58 87470827 87501486 TCTAATAATGACCTCTTCCTGC 58 Novel Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 1 1 1 112 1 251400935 251400953 TGTAGTCACTGCTGAAGCA 59 251387930 251387948 AACCTGTAGGTTGTGGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 2 1 1 129 19 8404466 8404486 TTGATAAGAAAGAGCTGAGGG 58 8368526 8368545 CTGATTCTTGTGGAGATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059 2 1 3 93 8 5169116 5171866 CAGAGTCATTTGCAGGCTG 59 5169041 5169059 GCAGGATACTCTGCTCTCC 59 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000078748 1 1 3 80 8 23492890 23492908 CTTGTGTTACTGCTTGGCA 59 23492950 23509003 TTTCCTTTCAACCTCTTGGTC 59 Novel Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 3 1 1 60 7 63270921 63270939 GAATTGAGCTGGAGTCAGC 59 63270879 63270898 CACCGTTACCAATGGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 1 1 1 60 8 40036723 40036744 CACTGAGAAGCAAAGATATGGA 58 40034209 40034230 CTTAGCATATGCGTTGATTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 2 2 2 80 7 75853237 75853944 GAAAGATTCTGACAGGAATGAGC 60 75853982 75854002 ACATACGGTTTCCACATTGAC 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 2 2 2 98 19 38370078 38385841 AGTTCCATTGTGATGATATGGC 59 38366101 38370019 TTGCTGACACCACTCTCAG 60 Novel Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 2 1 1 60 10 10943269 10943287 CCAGAAGAGGATTGAGGGC 60 10921313 10921331 ATCCTGCAGAGTCTTTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 1 1 1 60 X 108894040 108894058 CCTGAGTGGCTGAATTTGC 60 108894903 108894925 GATGAATGGCCCATATAGTACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 3 2 2 82 17 62682429 62682447 CATTTAGCTCCCAGTCACG 58 62673388 62682383 AAAGTCACGTTTCGAGCTC 59 Novel Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 2 1 1 63 2 44647332 44647351 AGGTGTACACGTCATCTGAC 60 44645820 44645838 TTCCGATTAGCATTGGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 2 1 1 117 17 89511693 89511714 CAACATAGAAGTCAAGCAATGG 58 89510851 89510873 GCTCCATCGACATGATATAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 3 1 1 118 17 89511697 89511716 AGCAACATAGAAGTCAAGCA 58 89510852 89510875 CTCCATCGACATGATATAATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650 1 1 2 80 4 68427680 68428089 GGGACCAAGAGACAAGACC 60 68428133 68428151 GGTGTATCTGGTCTCCAGC 60 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 2 1 1 60 8 121730405 121730425 CGTACACATTCAAATCACCAC 58 121726286 121726304 GCAAACTTCTGGATGGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 1 1 2 81 7 131431131 131431149 AAGTCTGCTGAGACATGGG 59 131375149 131431087 AAGATGTCAGAGGTCTCAGC 59 Novel Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 2 1 1 157 2 139942286 139942304 TAGCTCCAGGTTTGCTGAG 59 139945276 139945295 TATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 1 1 2 80 2 156399217 156399594 CAAATCCTATGGAACTTGATGGG 60 156399159 156399178 CCTCCTTCTCCTGTACTTGG 59 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 3 1 1 61 2 196554734 196554752 TCGTTGTCCTTGTGTTCGT 60 196554483 196554501 GGAGCATTCTTTGTAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 3 1 1 107 2 225143206 225143224 CAGTCTGAGCCCTTTCCTC 60 225144018 225144036 CTTCCACTCACCTCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 2 1 1 60 2 254280096 254280115 TTCTTGGAGGAAATCTGCCT 59 254285562 254285580 GCACTGGAGACAACTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 1 2 2 80 15 34237872 34238157 GATGTCTCACTTCTTGCCC 58 34238201 34238219 TCTTTGCTGTAGATGCCAC 58 NA Rattus norvegicus 81 Gpr150 ENSRNOG00000026944 ENSRNOT00000029265 1 1 1 60 2 2814446 2814465 TGTCTAACCTATCCCTACCC 57 2814405 2814423 CCCTGCTTAGAAGTGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk4 ENSRNOG00000019789 ENSRNOT00000026819 1 1 1 86 15 34329120 34329139 GTGGCTGTCAAGATCATCTC 59 34329183 34329541 GACTTTCATTACCTGTATCTCACG 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699,ENSRNOT00000080324 3 2 2 80 2 196494261 196494279 CCAATTATGTCCGAGCAGG 58 196494322 196494494 TAAACATCTTGGCAGACTCC 58 NA Rattus norvegicus 81 Ifi44l ENSRNOG00000049994 ENSRNOT00000073547 2 1 1 80 2 256977850 256978485 CTCTAAACCAGGTACAGAATGTC 59 256978523 256978543 CTGAAGCATAATTGCTGACCA 59 NA Rattus norvegicus 81 Fsip2 ENSRNOG00000051199 ENSRNOT00000089165 1 1 1 80 3 70355140 70356378 GAACACGTTTCAGAAATGCC 58 70356420 70356439 TGACAGAGTGGAAGATACCT 58 NA Rattus norvegicus 81 Klf17 ENSRNOG00000019479 ENSRNOT00000026344 1 1 1 83 5 136605454 136609998 AGTCTCCCATGGATAACGAG 59 136605390 136605408 CTGGTGGCTGATGAAATCC 59 NA Rattus norvegicus 81 LOC100911669 ENSRNOG00000049874 ENSRNOT00000074860 1 1 1 85 5 135030107 135030125 CACTGATCCGTCTTCTGTG 58 135030173 135030766 GTCTGAGAACTTGAGGTGAG 58 NA Rattus norvegicus 81 Psmb5 ENSRNOG00000013386 ENSRNOT00000018005 2 1 1 80 15 33262716 33263438 CCTGGCCTTCAAGTTTCAG 59 33262654 33262672 GTCTGGGAAGCAATGTAGG 58 NA Rattus norvegicus 81 Olr1125 ENSRNOG00000026489 ENSRNOT00000039181 3 1 1 60 8 18846348 18846369 GTGTTTATCTGAGTTCTGCTGG 59 18846390 18846408 ATCACAGAGGCTATTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chchd7 ENSRNOG00000031769 ENSRNOT00000047889 1 1 1 80 5 16845670 16847030 AATCCTTGCTTATCGGAATCTG 59 16847070 16847089 GTAACTGGAACACCTTTCCC 59 NA Rattus norvegicus 81 Tnf ENSRNOG00000055156 ENSRNOT00000079677 1 1 1 92 20 5191734 5191752 CTTCTCATTCCTGCTCGTG 58 5191161 5191678 TTTGGGAACTTCTCCTCCT 58 NA Rattus norvegicus 81 Tnf ENSRNOG00000055156 ENSRNOT00000079677 2 1 1 93 20 5191735 5191753 TCTTCTCATTCCTGCTCGT 58 5191161 5191678 TTTGGGAACTTCTCCTCCT 58 NA Rattus norvegicus 81 Gramd2 ENSRNOG00000025979 ENSRNOT00000036798 3 1 1 80 8 64533980 64534000 CATGGTCGGCTGTATATTTCG 59 64534039 64534642 AGGAATGACCACCTTGATATCC 60 NA Rattus norvegicus 81 Ebpl ENSRNOG00000014659 ENSRNOT00000020036 2 1 1 81 15 41668832 41669521 GGAGAAGTATTACAGGCATTTCG 60 41668773 41668792 CTCAGGGAAGAAGGTCATCC 60 NA Rattus norvegicus 81 Olr1138 ENSRNOG00000050182 ENSRNOT00000072410 1 1 1 60 8 19167279 19167299 AACAGAGAAATGAAGCAAGCC 60 19167239 19167259 AACTTATGGAGGTGACAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsta2 ENSRNOG00000029861 ENSRNOT00000032185 1 1 1 80 8 85644679 85644698 ATTCTCAACTACATCGCCAC 58 85642786 85644640 CTCTGAATACATGTCAATCAGGG 59 NA Rattus norvegicus 81 LOC100910954 ENSRNOG00000046657 ENSRNOT00000072449 2 1 1 105 2 49383162 49384086 ACATTAACAGCCAAGTCTGTG 59 49383077 49383095 GTGTGGAATCAACCCACAG 59 NA Rattus norvegicus 81 Bak1 ENSRNOG00000000485 ENSRNOT00000000576 2 1 1 80 20 5612308 5612327 TTTACTGGAACAGCTTCAGC 59 5611063 5612265 CCGCTCTTAAATAGGCTGG 58 NA Rattus norvegicus 81 Srpk1 ENSRNOG00000000511 ENSRNOT00000000612 1 1 1 80 20 5841175 5841576 GAAACTTGAAGAGTCGAGTTCC 59 5841116 5841134 TTAATTTCTGGCGCACCAC 59 NA Rattus norvegicus 81 RGD1561841 ENSRNOG00000029493 ENSRNOT00000042248 1 1 1 60 2 138489680 138489699 AAACTTTCGTGCCTGTTACC 59 138489720 138489740 TAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glrx ENSRNOG00000012183 ENSRNOT00000016372 2 1 1 82 2 2606259 2613226 GAGCAAGAACAGTTCCTCG 59 2613272 2613290 CCCATTCTGTTGCATGGAG 59 NA Rattus norvegicus 81 Klhl18 ENSRNOG00000020880 ENSRNOT00000056141 1 1 1 93 8 118675868 118679739 GAATAGCAAGCGAAGTGCC 60 118675793 118675811 CACAGAGTTGAGGGAGGAG 59 NA Rattus norvegicus 81 Olr7 ENSRNOG00000015289 ENSRNOT00000020514 3 1 1 60 1 70485686 70485706 CAAACCCATGTACTTCTTCCT 58 70485646 70485667 GACTGACACATAGCACATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif9 ENSRNOG00000020891 ENSRNOT00000028364 1 1 1 80 8 118746722 118748304 ATACAACGGTACCATCATGTG 58 118748346 118748364 TTGTAATTCTCCGTTGCCC 58 NA Rattus norvegicus 81 Olr482 ENSRNOG00000049721 ENSRNOT00000071782 2 1 1 60 3 73493074 73493095 ATTTCTACTGTGATGACATGCC 59 73493035 73493053 TGTTTGGAGTGAGTGTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629,ENSRNOT00000085690 2 2 2 80 2 188301062 188301082 CAGAAAGCACAAATTGTAGCC 59 188301122 188308318 TGGAAGGAATTCCATTCACTG 58 NA Rattus norvegicus 81 Mir878 ENSRNOG00000041199 ENSRNOT00000062952 2 1 1 60 X 151283514 151283534 AGTGCTTTATCTAGTTGGCTG 58 151283474 151283492 ACCCAGTATGGTGTCATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr74 ENSRNOG00000015689 ENSRNOT00000021006 1 1 1 60 1 168197415 168197435 CTGTGCTCAAGTTGGTATGTG 60 168197456 168197475 GCCACAAAGAGTCCATATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srsf3 ENSRNOG00000000520 ENSRNOT00000000627 2 1 1 80 20 6295758 6295778 AGGAGAAGAGAAAGGTCTCTG 59 6295820 6295925 CCTAGATCGGCTACGAGAC 59 NA Rattus norvegicus 81 Olr105 ENSRNOG00000015885 ENSRNOT00000021264 1 1 1 60 1 168600549 168600567 TGTGTTCATCCCGATGTCC 60 168600507 168600527 CAAAGCCACTATTGACGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc1a1 ENSRNOG00000014816 ENSRNOT00000020272 2 1 1 80 1 247021019 247024722 TGTCTGAGAACAAGACAAAGG 58 247024763 247024782 AGAAGATAATCAGGCCCAGG 59 NA Rattus norvegicus 81 Slc1a1 ENSRNOG00000014816 ENSRNOT00000020272 3 1 1 80 1 247021019 247024723 TGTCTGAGAACAAGACAAAGGA 60 247024763 247024782 AGAAGATAATCAGGCCCAGG 59 NA Rattus norvegicus 81 H2afx ENSRNOG00000010386 ENSRNOT00000059715 2 1 1 210 8 48665922 48665940 AAGAAGACGCGCATTATCC 58 48666114 48666132 CTCAGTACTCCTGAGAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhf2 ENSRNOG00000026662 ENSRNOT00000037483 3 1 1 60 5 24242146 24242164 GTCAGTCGTTGAAGTCTCC 58 24242104 24242122 CTGCTATCATCGTCATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg5 ENSRNOG00000058694 ENSRNOT00000088575 2 1 1 80 2 143943133 143943152 GGATTCAAACTACTGACCCG 58 143943193 143945071 TTCTACATCAAATGCCCATCG 59 NA Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000035531 1 1 2 81 1 201979748 201981131 GTCAGGAGACTTCTTGTGG 58 201979685 201979703 TACTCTGGAGACACCACAG 58 NA InUTR Rattus norvegicus 81 Vstm2b ENSRNOG00000017456 ENSRNOT00000023671 2 1 1 87 1 97634219 97634237 GTGGTGGTACCTCAAGGAG 59 97634285 97635343 CTTATTTGTTACCTTGCTCCGG 60 NA Rattus norvegicus 81 Sf3a1 ENSRNOG00000005218 ENSRNOT00000008355 2 1 1 80 14 84404930 84405637 TGAGCAAGGGAACTTTCCA 59 84405681 84405699 AACTTCTCGTAGCGTTCCT 59 NA Rattus norvegicus 81 Pir ENSRNOG00000003674 ENSRNOT00000004884 1 1 1 80 X 31892543 31892561 AGCATTCCCAGCCTATTCC 60 31863321 31872008 CATCATCAGGCCCAATATACAC 59 NA Rattus norvegicus 81 Cox6b1 ENSRNOG00000024309 ENSRNOT00000032026 1 1 1 96 1 89082170 89083106 AACTACCTGGACTTCCACC 59 89082092 89082110 AGAGGGACTTGTACACTCG 59 NA Rattus norvegicus 81 LOC688932 ENSRNOG00000030228 ENSRNOT00000041740 1 1 1 83 X 34296985 34297009 GATGATGCTGTTCAATCTGAC 58 34296922 34296941 GTATTCGACTTGGACCTTGG 58 NA Rattus norvegicus 81 LOC503435 ENSRNOG00000024350 ENSRNOT00000031235 3 1 1 60 X 23414368 23414386 CAAAGGTTCCAGTTGCCAG 59 23414408 23414428 GCAAAGAATCCATGCTATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000014761 1 1 2 84 2 45813981 45858986 AGAACTTGGAGGAGCTGAC 59 45859030 45859052 GCTGTCTAATACGAATATGACCC 59 NA Rattus norvegicus 81 Olr97 ENSRNOG00000011001 ENSRNOT00000014730 3 1 1 60 1 168501189 168501209 AACACTACACCTACTCAGCTC 59 168501149 168501169 TATCTTCTAATCCTGGCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hccs ENSRNOG00000025910 ENSRNOT00000037862 2 1 1 80 X 26298662 26301278 TCTTCATGCTCATGAGTGTC 58 26301320 26301339 CTTGCCCTTGGTGAATACTC 59 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 3 2 2 81 17 6799338 6799357 TCTGAAATGTTTGAAGCCGA 58 6799398 6802163 TTTCATAATCCTGTCTGTGCTC 59 NA Rattus norvegicus 81 Gde1 ENSRNOG00000050445 ENSRNOT00000073233 3 1 1 80 1 188398156 188398175 AGGGAAGCAGTTACAGAGTG 60 188397801 188398113 AGCAGAAGCCATATCTGCA 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300,ENSRNOT00000015784 2 2 2 80 1 161988760 161995719 TCATGCAGGTCATGGAAGG 60 161995760 161995781 GACACAGTTCAACATCTTCAGG 60 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 3 2 2 80 2 183529493 183534331 ACACATATAAGTGTACTCGGCA 59 183529434 183529453 GAGCTTCAAGTTCAAGGTCC 59 NA Rattus norvegicus 81 Olr1303 ENSRNOG00000046665 ENSRNOT00000071348 1 1 1 60 8 43208524 43208542 GCAGATCCAAAGCCTTCAG 59 43208482 43208500 CCAAAGAAGACCGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 1 2 2 80 2 43290923 43290942 AACGCTACGATTACTTTGCT 58 43290985 43291083 CCATATAGTCCGTAACGCC 58 NA Rattus norvegicus 81 AC096024.1 ENSRNOG00000015367 ENSRNOT00000020690 1 1 1 60 1 141447131 141447149 CGGTCTTCAGAACCCTCTC 60 141447171 141447191 CTGCTGGTCTCTAAATTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth2 ENSRNOG00000021051 ENSRNOT00000028588 1 1 1 80 1 101796999 101797108 GAGTACACTACGGACAAGGAG 60 101796939 101796957 CTTCCGAGGATCATCCACC 60 NA Rattus norvegicus 81 Atp5sl ENSRNOG00000020596 ENSRNOT00000027960 3 1 1 80 1 82414706 82414724 ATGACGTCCAGACTCTGAG 59 82414765 82415972 TCTTCCTGTAGGATCGATTCTC 59 NA Rattus norvegicus 81 Irf4 ENSRNOG00000061070 ENSRNOT00000088931 3 1 1 84 17 34892390 34892408 ATTCCAGGTGACTCTGTGC 60 34890261 34892342 CAGAGGTTCCACATGAGCT 59 NA Rattus norvegicus 81 Slc2a6 ENSRNOG00000005900 ENSRNOT00000008034 3 1 1 87 3 5571772 5572425 CTTGGCAAGTCTTCTGCTG 59 5571703 5571721 CATGAAGCTAAGCAGCAGG 59 NA Rattus norvegicus 81 Prss48 ENSRNOG00000024208 ENSRNOT00000046286 1 1 1 80 2 185298186 185298889 AAATCAGGAAGGTCATTACCC 58 185298126 185298144 TACAGTTGTTCACATGCCT 57 NA Rattus norvegicus 81 Olr263 ENSRNOG00000047215 ENSRNOT00000071859 1 1 1 60 1 172626019 172626037 ACATCCTCATCACCATCCT 58 172626061 172626079 GTGGAGAAAGCCTTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb11 ENSRNOG00000001613 ENSRNOT00000034940 1 1 1 80 11 47087269 47087287 GAGCTATGCGTCAAGTCCT 60 47085548 47087228 AAAGTACTTGGACTCTCCTGTG 60 NA Rattus norvegicus 81 Dpy19l4 ENSRNOG00000025416 ENSRNOT00000037869 3 1 1 80 5 24545528 24545549 ATGCAACAGATGTCTTTGTACC 59 24544925 24545488 TGGTTCAATCACTTCATGGC 59 NA Rattus norvegicus 81 LOC682846 ENSRNOG00000019280 ENSRNOT00000026074 2 1 1 80 1 66212160 66212178 TATGGGACAATCCAGAGGC 59 66203680 66212119 GGTTTCAAAGTTGGTCTAGGTG 60 NA Rattus norvegicus 81 LOC102554637 ENSRNOG00000049855 ENSRNOT00000044960 3 1 1 111 4 70744083 70744101 AAACTCAATGCTCGAGTGG 58 70743618 70744008 GATCATTGACACCGAAGCT 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000000158 3 1 6 93 17 84487045 84487063 GTGAGGTTTGCAAGATGGC 60 84485862 84486888 ATCAGGGATCTGCTGACTG 59 NA Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000082017 1 1 3 80 6 2314979 2314999 TACAGACATCTTTGGAGCCAG 60 2311887 2314938 ACATCCGGTCTGGTAAAGAG 59 NA Rattus norvegicus 81 Sc5d ENSRNOG00000008305 ENSRNOT00000011284 2 1 1 80 8 46530082 46531591 AGACTTTCCAAATGGCTGG 58 46530020 46530040 ATCCAGTAGATCAACATGTCG 58 NA Rattus norvegicus 81 Mir379 ENSRNOG00000035556 ENSRNOT00000053679 2 1 1 60 6 133857709 133857728 CAGAGGTGGTAGACTATGGA 58 133857749 133857769 AGTGGACCATGTTACATAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx19 ENSRNOG00000014719 ENSRNOT00000020041 2 1 1 80 8 31499174 31500439 GTACACCGTGAAGTATGAGAC 58 31500481 31500499 CGGTTTACGGTGTGATAGG 58 NA Rattus norvegicus 81 LOC100911944 ENSRNOG00000050764 ENSRNOT00000073085 1 1 1 60 8 18050229 18050249 AACAGAGAAATGAAGCAAGCC 60 18050189 18050209 AACTTATGGAGGTGACAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem190 ENSRNOG00000042528 ENSRNOT00000066383 3 1 1 96 1 72631965 72631983 TCTGGGATCTCAGCTTTGG 59 72631079 72631788 CTCCCTCACAACTCCATGG 60 NA Rattus norvegicus 81 Acbd5 ENSRNOG00000017642 ENSRNOT00000076964 1 1 1 80 17 89904444 89904464 ACATCATCTGACAAGTGACTC 58 89900402 89904406 CCTAAGTAATACTCCTCTTGTCC 58 NA Rattus norvegicus 81 Olr917 ENSRNOG00000049555 ENSRNOT00000073566 3 1 1 60 4 13644973 13644992 TTCAGACACTTGGTTCATGG 58 13645011 13645033 TATAATGAGAGTCCGTACAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc157 ENSRNOG00000005147 ENSRNOT00000006911 2 1 1 80 14 84381627 84381645 CAGACAGAAGAGGCTAAGC 58 84380972 84381586 CTTTAGGTCACATGTTTCTGTG 58 NA Rattus norvegicus 81 Pdzd8 ENSRNOG00000009460 ENSRNOT00000068082 2 1 1 85 1 280485670 280496133 GCTAGAATGTAGCAGGTTACTC 59 280485606 280485624 AAACACCACTGCTTAGCTC 58 NA Rattus norvegicus 81 Zmym5 ENSRNOG00000029220 ENSRNOT00000047731 3 1 1 80 15 37050118 37056232 CCAATCCTGATTCTTGTATCTCC 59 37050060 37050079 CTGGTGATAAAGAATCCGCC 59 NA Rattus norvegicus 81 Snrpc ENSRNOG00000000493 ENSRNOT00000000586 1 1 1 86 20 7417370 7418918 ACGATTCTCCGTCTGTGAG 59 7418962 7418986 CTTCCATCCATTTCTGGTAATAGTC 60 NA Rattus norvegicus 81 Snrpc ENSRNOG00000000493 ENSRNOT00000000586 2 1 1 89 20 7417370 7418918 ACGATTCTCCGTCTGTGAG 59 7418969 7418989 GTTCTTCCATCCATTTCTGGT 58 NA Rattus norvegicus 81 Ubl7 ENSRNOG00000007442 ENSRNOT00000010083 2 1 1 80 8 62699751 62699769 GTATTCAGCCTGGATCCAC 58 62699813 62703802 CTTTGTCCACTGGTTCAGG 58 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076641 1 1 2 80 X 58187195 58187216 GATCTACCTCAGCTTATGAACC 58 58187091 58187156 GTTGCGAGTGGATCTTTAGAG 59 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076641 2 1 2 80 X 58187194 58187216 GATCTACCTCAGCTTATGAACCT 60 58187091 58187156 GTTGCGAGTGGATCTTTAGAG 59 NA Rattus norvegicus 81 Kdelc1 ENSRNOG00000011740 ENSRNOT00000016285 1 1 1 80 9 50878149 50878167 CAGAGTCCAGGGATATCGT 58 50877967 50878105 TATCCAGACTTACTCGGCC 58 NA Rattus norvegicus 81 Fshr ENSRNOG00000016783 ENSRNOT00000022802 1 1 1 80 6 12895669 12997610 GAACGCCATTGAACTGAGG 59 12895607 12895625 TCCAGGTCTCCAAATCCAG 59 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010,ENSRNOT00000087898 1 2 2 80 X 40300634 40300652 TGCTGTAACAATCACAGCC 59 40300694 40301074 AGGTAGACATGTATGCAAACG 59 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010,ENSRNOT00000087898 2 2 2 80 X 40300635 40300654 GCTGTAACAATCACAGCCTC 59 40300694 40301075 CAGGTAGACATGTATGCAAACG 60 NA Rattus norvegicus 81 AC098125.2 ENSRNOG00000046407 ENSRNOT00000075607 2 1 1 60 1 229783745 229783765 CTCATCACTGGCTCTTATGTC 58 229783705 229783725 ATATGTCTGCAACATGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000074299 1 1 5 80 1 87904394 87906069 TGCTTTCACTGAGTCTTGC 58 87906113 87906131 TCATAACCATCCAGGGCTC 59 NA Rattus norvegicus 81 Vbp1 ENSRNOG00000050401 ENSRNOT00000072973 3 1 1 66 1 148428374 148428394 ATACAAGTTCATGGAGCTCAG 58 148427982 148428000 GATCTCAGGGATCTGCGAC 60 NA DesignNoJunction Rattus norvegicus 81 Dnajc19 ENSRNOG00000049819 ENSRNOT00000071944 3 1 1 80 2 120506228 120506247 TGGGTACTATAGAGGTGGGT 59 120506290 120506787 TTGGCAGTAGGGCTTACAC 60 NA Rattus norvegicus 81 Wnt8a ENSRNOG00000020157 ENSRNOT00000064574 3 1 1 92 18 27333382 27334034 ATAATGGGAAAGCAGGTGG 58 27334090 27334108 TGTCCACAAAGAGTCTGGA 58 NA Rattus norvegicus 81 AABR07065802.1 ENSRNOG00000047599 ENSRNOT00000075526 1 1 1 60 6 141831439 141831460 ATGCAACATACTATGGGAAGTC 58 141831400 141831421 TTGGAATCATCTCTTGAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2l1 ENSRNOG00000009040 ENSRNOT00000065135 2 1 1 80 14 85315340 85315439 CTCATCTTTGTGAGGGTGC 59 85315278 85315297 GTCTAGGTAGTGCTCCAGTG 59 NA Rattus norvegicus 81 Acta2 ENSRNOG00000058039 ENSRNOT00000083468 1 1 1 80 1 252537948 252539430 AGATCAAGATTATTGCTCCTCC 58 252537889 252537909 GGAAGGTAGATAGAGAAGCCA 59 NA Rattus norvegicus 81 Zfyve19 ENSRNOG00000012528 ENSRNOT00000016854 3 1 1 81 3 111015845 111016189 CTATAAGAAACGCGTGGCAG 60 111016233 111016251 TTGGTCTTTGTGGGTCAGG 60 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000026947 2 1 2 80 18 30952872 30954310 AGCCAATCTGAAGTTCCTG 57 30964434 30964453 TGTATCGAACTGGTTGTTGG 58 NA Rattus norvegicus 81 Ninj2 ENSRNOG00000010282 ENSRNOT00000013721 2 1 1 80 4 152631348 152731271 ATCATCCACCTTCAACACAG 58 152731313 152731332 CTTCTTGGTGGCATAATGGT 58 NA Rattus norvegicus 81 Tff1 ENSRNOG00000001164 ENSRNOT00000001538 1 1 1 147 20 9893542 9895887 CCAGGAAGAAACATGTGCC 59 9893413 9893431 CTCAATGACCAGAGGTCGG 60 NA Rattus norvegicus 81 Rab11fip2 ENSRNOG00000009523 ENSRNOT00000012734 3 1 1 82 1 281095118 281095136 AAGTCTAGCACTGTAGGCC 59 281094144 281095074 TTGAGACTTCCACTTTCTGGA 59 NA Rattus norvegicus 81 Sfi1 ENSRNOG00000018412 ENSRNOT00000036848 1 1 1 80 14 83392088 83392106 GGGAAGAATGGTGGGTCTC 60 83390169 83392050 GGTTGTACAAGTAGTATCTGTAGTG 59 NA Rattus norvegicus 81 Uqcc3 ENSRNOG00000045561 ENSRNOT00000074747 1 1 1 80 1 225076802 225076910 GTTAATGCTGCAGGAGATGC 60 225076741 225076759 GTAGCCATCACCAGTTCCT 59 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735,ENSRNOT00000084214 1 2 2 80 12 52014435 52015619 GAGTTCTGGAAGGAAACCGA 60 52015662 52015680 TAATTCAGCCTCATGGCGA 59 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000005646 2 1 2 80 14 84164898 84169696 GTCTGTTCAACAGAGTGCTC 59 84164837 84164855 AAACTGGGCAAAGAAGTGG 59 NA Rattus norvegicus 81 Igfbp1 ENSRNOG00000058780 ENSRNOT00000077177 3 1 1 80 14 87450723 87451578 AAGAAATGGAAGGAGCCCT 59 87451621 87451640 ATCTCCTGCTTTCTGTTGAG 58 NA Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000036549 3 1 2 106 7 115978561 115981668 GGAGCTAGCTGTAACACAG 58 115978473 115978491 CAATGATGACACAGTGGGT 58 NA Rattus norvegicus 81 AABR07007130.2 ENSRNOG00000042665 ENSRNOT00000047645 2 1 1 80 1 282498802 282498820 GATCGTTCCCAGAAGAGTC 57 282498539 282498760 TTCCCAATTGTAGCCTATAGC 58 NA Rattus norvegicus 81 Defb30 ENSRNOG00000038758 ENSRNOT00000059211 1 1 1 85 15 46221750 46223336 TTCCTCCAGTTAGAAGTGGAG 59 46221685 46221703 TACATTCCTGCAATGCCCT 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 1 1 1 67 1 99864135 99864153 ACGCCTGAACAAGATAGAC 57 99864184 99864687 AGAATTAGCAGCTCTGCAC 58 NA DesignNoJunction Rattus norvegicus 81 Map7d2 ENSRNOG00000005176 ENSRNOT00000045285 3 1 1 80 X 38400823 38409913 AATCTATGGATGTGAGTCCTG 57 38400763 38400783 CAGGAATCATTTCACTCACTG 57 NA Rattus norvegicus 81 Rn60_X_0609.1 ENSRNOG00000003115 ENSRNOT00000004152 3 1 1 60 X 60292436 60292457 TATGGGATAAAGGGATTGAGGT 59 60292397 60292418 ACAGTCTCTTCATTGTACTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl8a4 ENSRNOG00000016803 ENSRNOT00000022614 3 1 1 81 17 39601852 39603163 CCTCCCTTCTCTGGAACAC 59 39603206 39603226 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Olr130 ENSRNOG00000050164 ENSRNOT00000046616 2 1 1 60 1 169039866 169039888 CTCTTTCCTCCATTTATGAACCC 59 169039828 169039846 TCCTCTGAATCTGCTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nanos3 ENSRNOG00000031593 ENSRNOT00000050214 2 1 1 207 19 25287883 25287901 AAAGACACAGAATGCTGGC 59 25285005 25285023 CTAAGCAAGGTCCAGTCTC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom2r28 ENSRNOG00000002641 ENSRNOT00000038169 1 1 1 80 1 69579355 69579375 ACATGATGGACACTTTCACCT 60 69579417 69579916 TTTCTGACAGGGTTTCCCA 59 NA Rattus norvegicus 81 Meox2 ENSRNOG00000006588 ENSRNOT00000008803 1 1 1 80 6 56626459 56678159 AAAGCGACAGTTCAGATTCC 59 56678200 56678220 TGAAAGCTGTTCTTTCCTTCC 59 NA Rattus norvegicus 81 Grik5 ENSRNOG00000020310 ENSRNOT00000027578 3 1 1 88 1 81933925 81933943 GATTGGTGTCAAGCCACTG 59 81933516 81933873 CATACTCTACCATGCGCAG 58 NA Rattus norvegicus 81 Mir1843 ENSRNOG00000045015 ENSRNOT00000070282 1 1 1 60 6 103567632 103567654 CTACATGAATATGGAGGTCTCTG 58 103567594 103567613 GGTGAACGATCAGACTTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox20 ENSRNOG00000004553 ENSRNOT00000006154 3 1 1 80 13 96222784 96222807 ATCTATACTGTATGGCTCACTAGG 59 96222843 96222953 CAGGATCTTCTAATTCTGCTGG 59 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000083362 1 1 3 262 X 62365972 62365990 ATCCGGCACTACGTTTCTC 60 62366678 62366696 CATCCTCCAACAGCTCCTC 60 NA DesignNoJunction Rattus norvegicus 81 AC128084.1 ENSRNOG00000056310 ENSRNOT00000040493 3 1 1 60 9 65172427 65172448 GCAAGTTAAAGGCAAGATTCTG 59 65172469 65172487 GTGCTTGATGTGCTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg5 ENSRNOG00000005250 ENSRNOT00000007174 2 1 1 80 6 7947565 7947688 TTCTCCTGAGGAGAGTAACGA 60 7947505 7947528 CCATGATCAGATTCTGAACAAGAC 60 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248,ENSRNOT00000084662 2 2 2 173 2 148774512 148774944 CTCCCTCAACCAATTTATAGACAC 59 148776959 148776980 GAAGAAGACCATCATACATGCA 59 NA Rattus norvegicus 81 Rn60_X_0636.4 ENSRNOG00000048066 ENSRNOT00000072905 3 1 1 60 X 63002721 63002742 TTACCAAACTCGACACATTCTC 59 63002682 63002703 CTCTACATCGCTTACTAGACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb18 ENSRNOG00000019557 ENSRNOT00000040169 1 1 1 80 9 97130290 97151635 ATTGCTAGGAGACCTGGAC 59 97130228 97130247 GTACTGATCTCGAACACCAC 58 NA Rattus norvegicus 81 Rn60_7_0099.2 ENSRNOG00000051213 ENSRNOT00000076768 1 1 1 60 7 9731150 9731169 TTGCAAGTTAAGGGCAAGAC 59 9731109 9731127 GTTTGATGGGCTCAATCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atoh1 ENSRNOG00000006383 ENSRNOT00000008358 3 1 1 60 4 95498592 95498610 GTTGTAGTAGACGAGCTGG 57 95498634 95498652 CATTCACCTGTTTGCTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0637.1 ENSRNOG00000051209 ENSRNOT00000076071 3 1 1 60 X 63031578 63031598 AAGAGAAAGGTCTCTGTCTCG 59 63031617 63031638 AGACCTAGAGAAGGATTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 3 2 3 80 5 48058407 48058425 GAATGTCTGAATCGCCTGC 59 48057249 48058365 TTCATCCACCAATGACATCTG 58 NA Rattus norvegicus 81 Slc15a2 ENSRNOG00000002305 ENSRNOT00000003189 3 1 1 80 11 66944219 66944238 TTCTCAGTCTTCTACCTCGC 59 66944280 66944570 CTTCACATCTCCTCTCAGCA 59 NA Rattus norvegicus 81 Prl5a1 ENSRNOG00000016307 ENSRNOT00000021982 1 1 1 80 17 38329967 38330766 TATACTCAGCCAGGTTCATCC 59 38330804 38330826 GATTTCTGTACATATGGCTCTCC 59 NA Rattus norvegicus 81 Mir362 ENSRNOG00000036268 ENSRNOT00000054391 1 1 1 60 X 16117173 16117192 GAATCCTTGGAACCTAGGTG 58 16117213 16117233 TTGAATCCTTGAACAGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 3 1 1 65 6 6180545 6180566 AGCTGTATCTTATCTGGACCAG 59 6180589 6180612 GCTTTAGAAACCAATTTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000084852 1 1 2 120 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099664 91115258 GTCATAGTCTCCACAGTATCGA 59 NA Rattus norvegicus 81 Fcnb ENSRNOG00000009342 ENSRNOT00000012494 1 1 1 80 3 6621849 6622140 AACTGGACCCAAAGGAGAC 59 6621189 6621207 GTAGCACATGACTGGGAGG 60 NA Rattus norvegicus 81 LOC100911478 ENSRNOG00000019043 ENSRNOT00000025743 3 1 1 90 9 101027727 101027745 ATCATGAGCGTCCTAGTGG 59 101027089 101027673 CTCTGGCCTCTGACATACC 59 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846,ENSRNOT00000067129 1 2 2 80 5 24609772 24609901 CAATATTGCCAAGGGTGGTG 60 24609711 24609734 CTTACAAATCTAACCAGAGCTTCC 60 NA Rattus norvegicus 81 Ttc39d ENSRNOG00000027343 ENSRNOT00000023114 3 1 1 143 6 2886931 2892996 TCAACAGAGCAACACTTCAG 59 2893101 2893120 CATGTCTTTGGTACCGTGAC 59 NA InUTR Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 3 2 2 84 1 100395180 100395199 TGCTGATACCAATGACAGGT 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 LOC100364352 ENSRNOG00000043320 ENSRNOT00000040989 1 1 1 80 1 83309879 83310067 ACCTGCTCCCTAAGAACAC 59 83310108 83310129 TGTCTGGTTGTTCAAAGTACTG 59 NA Rattus norvegicus 81 LOC100910689 ENSRNOG00000046318 ENSRNOT00000072294 2 1 1 80 10 78171043 78171061 GGTCACCTTCAATGCTGAC 59 78171102 78172704 CCTGGTACCACATAGATCTCTG 60 NA Rattus norvegicus 81 Homez ENSRNOG00000014887 ENSRNOT00000019979 2 1 1 60 15 33527007 33527026 TATGTGAAGGAAGAGTCAGC 57 33513136 33526984 TACCCTTCAGAGACAGCTC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 2 2 2 136 9 9984378 9985199 GAGCCAAGAAACACCAGAC 59 9983270 9983288 CTATGAGGAGGGTTCCCAG 59 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346,ENSRNOT00000079437 2 2 2 80 10 30984588 30988737 CGGATTCCGATACAATGAACG 60 30988777 30988797 AACGCACTCTTGTTCTTATCC 59 NA Rattus norvegicus 81 Slc4a1ap ENSRNOG00000004901 ENSRNOT00000006525 1 1 1 80 6 26240006 26240689 CTCTTTATCCTTCAGGGACCA 59 26239946 26239966 TTTGCGAAGTTCCTTCAACTG 60 NA Rattus norvegicus 81 Ptms ENSRNOG00000060098 ENSRNOT00000081802 1 1 1 80 4 157436349 157436367 AGAATGGAGCTGAGGAGGA 60 157436137 157436307 CCTCCTCATCTTCTTCGTCTC 60 NA Rattus norvegicus 81 Daxx ENSRNOG00000000477 ENSRNOT00000000559 1 1 1 80 20 5484731 5484750 AGCAGTAACTCAGGTAGCAG 59 5484071 5484693 CATCTTACACAGTTCAAGGAACTC 60 NA Rattus norvegicus 81 Ubxn4 ENSRNOG00000003625 ENSRNOT00000004878 2 1 1 80 13 44967851 44971116 TCACAAAGTCCAACAGATGC 59 44971155 44971177 GTAGATACGGAACTTTCTGACTG 59 NA Rattus norvegicus 81 Olr1117 ENSRNOG00000049455 ENSRNOT00000049758 3 1 1 60 8 17832949 17832967 AAACACAGCAATGGCTTCC 59 17832907 17832927 GATAAATGGGTTGAGCAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lix1l ENSRNOG00000021213 ENSRNOT00000056237 1 1 1 80 2 198744632 198746946 GGCATCTTTCAATGGTAACAG 58 198746986 198747006 TTAGATTCCAGCATGAATCGG 58 NA Rattus norvegicus 81 Mir448 ENSRNOG00000035635 ENSRNOT00000053758 1 1 1 60 X 118277718 118277742 GGAAATCCCTACTTCATACTAAGAG 59 118277757 118277778 AGATGGGACATCCTACATATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr818 ENSRNOG00000049389 ENSRNOT00000007229 3 1 1 60 4 72603578 72603596 CTCCTGGTGGTAATGTCCT 58 72603620 72603638 CAGAGTATCGGAGTGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 3 2 2 85 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613275 TAGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Wee1 ENSRNOG00000010017 ENSRNOT00000013362 3 1 1 80 1 174771623 174771641 TGTGAAGAGGCTAGATGGA 57 174771683 174772250 GCATTCTGTTCATCAACAGAG 58 NA Rattus norvegicus 81 Gss ENSRNOG00000018964 ENSRNOT00000025657 1 1 1 80 3 151084836 151086097 CGAAGGCTGTTTATGGAGG 58 151084774 151084793 CTGTGCGTTATACTGACTGG 59 NA Rattus norvegicus 81 Pkdcc ENSRNOG00000004205 ENSRNOT00000005664 3 1 1 85 6 6432014 6432878 ATCGATTCCGAATCTGCCT 59 6432927 6432945 GAAGTCAAGCAGAGTGACC 58 NA Rattus norvegicus 81 Sucnr1 ENSRNOG00000014039 ENSRNOT00000018767 3 1 1 60 2 150212076 150212095 TTTCCATCTCTGACCTTGCT 59 150212117 150212136 GTGGCGTAACTCCTTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910474 ENSRNOG00000008521 ENSRNOT00000011278 3 1 1 60 12 33182673 33182694 TGAAATCCGTCATATCCTAGTC 57 33182634 33182655 CATCTCTACTTCTTCCTCTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000045609 ENSRNOT00000073344 1 1 1 60 10 35571781 35571802 CAATGAGACTGATTGTCATGTG 58 35571817 35571841 GTATGGCTATAAAGTAACTGAGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbp1a ENSRNOG00000008822 ENSRNOT00000012608 1 1 1 100 3 147058201 147058220 AATTTGACTCCTCTCGGGAC 60 147058283 147060551 CACACTCATCTGGGCTACC 60 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 1 2 2 80 15 28545453 28546849 AGTAACCAACCAAGTAGCTC 57 28546890 28546910 TCTTCTTCCTGTTTATGCTGG 58 NA Rattus norvegicus 81 RGD1563378 ENSRNOG00000048574 ENSRNOT00000050544 1 1 1 60 X 45637564 45637584 TTTCAAGCGATTCTTCCTGAG 59 45637606 45637624 CACAAACATCTCCGCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr218 ENSRNOG00000048022 ENSRNOT00000049686 1 1 1 60 1 170927237 170927255 AAGAAAGCCCTTGTCACCT 59 170927195 170927214 CAGCACCATAGAACATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 1 1 1 68 6 24080568 24080586 CTCTACTCGGTTCACAGGC 60 24080615 24082916 CTGTACTGCAAGTTAACTACCT 58 NA DesignNoJunction Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 3 1 1 69 6 24080568 24080586 CTCTACTCGGTTCACAGGC 60 24080616 24082917 ACTGTACTGCAAGTTAACTACC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0251.1 ENSRNOG00000051342 ENSRNOT00000076862 1 1 1 60 15 21114213 21114233 AACTCCCTTTCAAACATGGTC 59 21114173 21114191 TTGGTGTTGTTAGTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr149 ENSRNOG00000014793 ENSRNOT00000019929 2 1 1 80 2 152909102 152910055 GCTGCCTATGATGATCCAC 58 152909040 152909060 AGTAGAAAGCTGAGCATATCG 58 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000074338 2 1 2 88 3 134413210 134418091 AGGAGAAGGAACGTTTGCT 59 134418142 134418161 TGACAGAATGGTGCTCAGAG 60 NA Rattus norvegicus 81 Mgmt ENSRNOG00000016038 ENSRNOT00000021537 2 1 1 80 1 209423625 209456921 CCAGCAAGATTCATTCACCAG 60 209456960 209456981 TGCTGGTAAGAAACCATTTCTC 59 NA Rattus norvegicus 81 Olr167 ENSRNOG00000049739 ENSRNOT00000072462 1 1 1 60 1 169802106 169802125 AGCCTATGTACCATTTCCTG 57 169802065 169802083 ATAGTAGTTGCCAGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk13 ENSRNOG00000000515 ENSRNOT00000000621 1 1 1 80 20 6023748 6023903 GGTCTAAAGTACATCCACTCAG 58 6024505 6024524 CTCACAGTCTTCATTCACGG 59 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 2 2 2 80 1 86981634 86981652 AAACACAGCTGGATGTGGA 60 86981691 86981843 TGGTAAGATAATACCCAGCTTCTC 60 NA Rattus norvegicus 81 Spink6 ENSRNOG00000046265 ENSRNOT00000072078 3 1 1 64 X 43044949 43044968 TAGCAGGTGTCTTTCTGCTC 60 43042272 43044922 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 1 2 2 80 6 91557949 91560385 ATATTCCACTAAGTGATGGCTG 58 91560424 91560444 GCCTGGTGTAAGGTAAATGTC 59 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 2 2 2 80 6 91557891 91557909 ACTTTAACAGCAATCGCGG 59 91557953 91560386 CCAGCCATCACTTAGTGGA 59 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000026900 2 1 2 82 1 85297344 85299433 TCCCTAGTCTACAGTCCTAGC 60 85297282 85297300 AGAAGCAGGCAGAACTCTG 60 NA Rattus norvegicus 81 AABR07054514.2 ENSRNOG00000052824 ENSRNOT00000073505 1 1 1 60 3 158808795 158808816 GGCTTTATTAAATGGCTCTGTG 58 158808837 158808855 AGGCTGGTCTGTTAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca6 ENSRNOG00000046890 ENSRNOT00000073149 3 1 1 80 10 98512571 98513630 CATTTCTAACCTTTCTACCGCT 59 98512512 98512532 CCTCTATCAAAGCATTAGCCA 58 NA Rattus norvegicus 81 Celf6 ENSRNOG00000052224 ENSRNOT00000082840 1 1 1 80 8 64426133 64426241 GCAACAAAGAGAAGGTCCTG 59 64426284 64426302 TGTATGAGTTCCGCATCCC 60 NA Rattus norvegicus 81 Celf6 ENSRNOG00000052224 ENSRNOT00000082840 3 1 1 80 8 64426138 64426246 AAAGAGAAGGTCCTGAAGGC 60 64426288 64426307 ATGTCTGTATGAGTTCCGCA 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 1 4 4 81 15 51927602 51936383 TCACCTTCAAACAAGAATGTCG 60 51927542 51927562 AGAGGAAGACAGTCGAAAGTG 60 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 1 2 2 81 20 248554 248573 GTGAATTGTACTTGGCACCA 59 250938 254199 ATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Ttc39b ENSRNOG00000042603 ENSRNOT00000058611 2 1 1 80 5 101337259 101337278 GAAGAAGTGCACAGTTGTGG 60 101332586 101337217 TGCATCTCCTCTTCACTCAG 59 NA Rattus norvegicus 81 Arid3b ENSRNOG00000019677 ENSRNOT00000068340 1 1 1 80 8 62577433 62577451 GGAGGGAGATCACCAAAGG 60 62576219 62577390 ACTTCATGTACTGGGTCCTC 59 NA Rattus norvegicus 81 Cd200r1 ENSRNOG00000039048 ENSRNOT00000002799 3 1 1 110 11 60849576 60850395 TTGAGGAGGATGAAATGCAG 58 60849485 60849504 CATTGACTTTGCCTTGTGAC 58 NA Rattus norvegicus 81 Defb15 ENSRNOG00000048359 ENSRNOT00000058066 1 1 1 71 16 75107886 75107904 CTTCAGGTCATGAAGACGT 57 75105467 75107851 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Nhlrc3 ENSRNOG00000010843 ENSRNOT00000014562 3 1 1 81 2 142684847 142685418 GGTTAGTTTACGTAGCTCAAAGAG 60 142684789 142684809 CAGGCTCGTAGGAAATATCCA 60 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 2 2 2 80 17 18454133 18454247 TCCATCACCGTCGATAACTG 60 18454072 18454092 CTTGGAGTTGATCACTTCCAC 59 NA Rattus norvegicus 81 Il13 ENSRNOG00000007652 ENSRNOT00000010121 1 1 1 92 10 38984084 38985330 ACCAGAAGACTTCCCTGTG 59 38983440 38983458 TGTTGGTCAGGGATTCCAG 59 NA Rattus norvegicus 81 S100a4 ENSRNOG00000011821 ENSRNOT00000015958 2 1 1 81 2 189998571 189998592 AAGTTCAAGCTGAACAAGACAG 60 189998634 189999309 CTTCGTCTGTCCTTCTCCC 60 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 1 2 2 80 1 177685542 177699503 CTTGTCAAATTCTGGGCGG 60 177699546 177699565 CTCGTATTGACTGCTCACAC 59 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 3 2 2 81 1 177654218 177667431 CCAAGCTAAAGGTAACAAGCA 59 177668256 177668274 ATCTGGGCTGATGACATGG 60 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 1 2 2 85 3 123690556 123693735 TAGTCAAGGTAGGCTTCCTG 59 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Dmxl1 ENSRNOG00000024671 ENSRNOT00000031812 1 1 1 80 18 44614714 44615489 AAACCAAGGGATCAGAAGAC 58 44615531 44615550 GCGTATATGGAGTTGTACCC 58 NA Rattus norvegicus 81 Hlf ENSRNOG00000002456 ENSRNOT00000055664 2 1 1 90 10 77918139 77918157 CTACCTTTATCCCGCCTCC 59 77916007 77918086 TTGCTAAATGCGTCTTCAGG 59 NA Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 1 1 1 124 1 100810414 100810434 CGTAGACTATGGGAAACTCCC 60 100809058 100810328 AATCAGAGAAGCCGTCACC 60 NA DesignNoJunction Rattus norvegicus 81 Flna ENSRNOG00000054890 ENSRNOT00000079889 1 1 1 80 X 156473578 156473711 TGTTGACAAAGTGGATGTTGG 59 156473752 156473771 GATGCTACTTTGCCTTGACC 59 NA Rattus norvegicus 81 Flna ENSRNOG00000054890 ENSRNOT00000079889 2 1 1 80 X 156469011 156469123 ACAGGAACTCATAAGGTGAC 57 156469166 156469184 TGACTTGTCCACATACACC 57 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 3 2 2 80 17 15999697 15999715 AACCACAAGATGGTGACCT 59 15999756 16002413 GTCATGCTCTACCATGTATGTG 59 NA Rattus norvegicus 81 Slc4a9 ENSRNOG00000018525 ENSRNOT00000025137 1 1 1 80 18 29354936 29355232 CAGTGACCCTCAATTCCAG 58 29355276 29355294 TGTAGGAAGGCATCTAGGG 58 NA Rattus norvegicus 81 Rn60_20_0009.7 ENSRNOG00000058671 ENSRNOT00000079140 2 1 1 60 20 1613068 1613088 TCAGCTTAGATCCAAGACTCC 59 1613028 1613046 AGACATGCTAGGTTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map2k6 ENSRNOG00000004437 ENSRNOT00000006217 3 1 1 80 10 98782997 98783015 CAACCTCAGACCAGTTCCA 59 98792722 98793430 CACCTCAAAGTTCTGGTTTCC 60 NA Rattus norvegicus 81 Txndc15 ENSRNOG00000000133 ENSRNOT00000000146 3 1 1 81 17 9430926 9430945 GGCGAGGTTTAACCATACAG 59 9429775 9430885 TTTCTTGGCTTCTATACCTGTC 58 NA Rattus norvegicus 81 Fbxo4 ENSRNOG00000015622 ENSRNOT00000020925 2 1 1 80 2 53807333 53807354 GTTGAGTTTGATGTCTTCTGAG 57 53803561 53807292 ACTCCAGATCCAATACCGT 58 NA Rattus norvegicus 81 Clec4d ENSRNOG00000010181 ENSRNOT00000013536 3 1 1 80 4 156257757 156257775 CGCGTTGAAGTTCTCAGAC 59 156257819 156258801 CAGGTACCTCCTGTAGCTC 59 NA Rattus norvegicus 81 RGD1563528 ENSRNOG00000023163 ENSRNOT00000031670 1 1 1 60 X 11101415 11101433 AGTAGTAGCGCTAATGCGG 60 11101373 11101393 ATAATCCCGAAACTCCTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560108 ENSRNOG00000032042 ENSRNOT00000051855 2 1 1 93 1 222673112 222673397 CTCACCAGACGATGACCTC 60 222673454 222673472 GCTGAGATCCTGAGAGGAG 59 NA Rattus norvegicus 81 Olr1128 ENSRNOG00000029054 ENSRNOT00000044686 2 1 1 60 8 18926696 18926717 TTATACAGGGTGCCTTACTCAG 59 18926738 18926756 ACAGCTTTCAAATCCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 3 3 3 82 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528276 53529908 GGTTCACAAGCCATGATGC 60 NA Rattus norvegicus 81 Mir3563 ENSRNOG00000035507 ENSRNOT00000053630 3 1 1 61 6 133859355 133859374 ACCGTCCCACATACATACTC 59 133859313 133859332 CGCGGTACTTGAAGAAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gchfr ENSRNOG00000012290 ENSRNOT00000016458 3 1 1 94 3 110975988 110977400 AGATCCGTATGGAAGTGGG 59 110977458 110977476 CAGGACTCGTCTCTTGGAG 59 NA Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 2 2 2 80 17 15686127 15686145 CAGGACTACTCTGAGCTGG 59 15682724 15686083 AAATTCCACCTGGTTCTGC 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724,ENSRNOT00000006832 2 2 2 80 6 7846916 7846934 GGACGACTCAAGACTTGGA 59 7846978 7847428 TACATCGCTTGGAGACCTG 59 NA Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 1 2 2 60 20 1889944 1889965 AACTCTTCATCTTCATGTCCCT 59 1889986 1890004 AAGGCCATCACTGTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306995 ENSRNOG00000042555 ENSRNOT00000030268 3 1 1 82 11 64489068 64489087 CCTCCATCACAAACAAAGTG 57 64489129 64490030 TTCTGTAGTGATATCAGCAGTG 58 NA Rattus norvegicus 81 LOC100909937 ENSRNOG00000047788 ENSRNOT00000073494 3 1 1 60 8 43024209 43024229 GTTTCTTGTACACAGTGATGG 57 43024169 43024190 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 2 2 2 181 9 98551105 98551123 GAGAGTCTTCAGGAGTTGC 58 98550624 98550642 CATTGGATGTAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnh6 ENSRNOG00000008078 ENSRNOT00000010816 1 1 1 80 10 94220499 94220518 TCCACGCTCTACTTCATCTC 59 94220559 94223787 GTCATTCTTCCCTAGAATGGC 59 NA Rattus norvegicus 81 Slurp1 ENSRNOG00000005944 ENSRNOT00000007923 1 1 1 81 7 115962584 115962605 GAATATTGTTCACTGCAAGCTG 59 115962029 115962543 GTGGTTGAAAGGGAACTCTG 59 NA Rattus norvegicus 81 RGD1564171 ENSRNOG00000037406 ENSRNOT00000056603 2 1 1 81 2 189414402 189415511 GAAGACTGTCAACAGGTGG 58 189415556 189415574 AGCATACAGGTTTCTCCGT 59 NA Rattus norvegicus 81 Slc22a8 ENSRNOG00000018086 ENSRNOT00000024488 3 1 1 80 1 224817489 224817507 GCCTATCTGGCTCCTTCAG 60 224817550 224817704 TACCCATACCTGTTTGCCTG 60 NA Rattus norvegicus 81 Pigs ENSRNOG00000011366 ENSRNOT00000015207 2 1 1 80 10 65602888 65602906 ACATTCAGGACAAGGATGG 57 65602947 65603449 CATTGTATACCATAATGCCACC 57 NA Rattus norvegicus 81 RGD1566085 ENSRNOG00000049970 ENSRNOT00000051678 3 1 1 80 20 10900593 10902903 GTGCTCACTGGTTATACAAGAG 59 10900534 10900552 GGAGTTCTGTTGCTTCAGC 59 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 3 2 2 80 19 23937395 23937792 TTAGCATGTCAACACGCTC 59 23937333 23937351 AAGCATCATACCCAGAAGC 58 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 2 3 3 80 2 231059045 231059950 GACGGAAATTGAAGGGTGC 60 231063264 231063285 GTTTCTTCAACAAACTCTTGGC 59 NA Rattus norvegicus 81 Serpinb5 ENSRNOG00000002640 ENSRNOT00000003625 3 1 1 81 13 26916730 26920057 CCATTCAGAATCAACAAGACAG 58 26920098 26920117 CATCAATGTTACCCAAGCAG 57 NA Rattus norvegicus 81 Vps54 ENSRNOG00000007125 ENSRNOT00000010264 3 1 1 80 14 106153661 106153679 GAGGTAGATCCGACAAAGC 58 106153723 106154850 TTGATCTGTAACTGTGGGC 58 NA Rattus norvegicus 81 Plxnd1 ENSRNOG00000025209 ENSRNOT00000032158 2 1 1 80 4 147867311 147867410 AGTTCTCCTATGTGCTGCC 60 147867249 147867268 GAATGGTGATTCTTGTGCCC 60 NA Rattus norvegicus 81 Telo2 ENSRNOG00000016774 ENSRNOT00000022670 1 1 1 80 10 14474442 14474461 AGAATTACTTCCCTCTGCTG 57 14472779 14474399 AGTCTAGACCACCTTGGAG 58 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 1 2 2 99 6 27155931 27189840 ACCACAATCGGCTATGGTC 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Ndufs5 ENSRNOG00000026646 ENSRNOT00000036389 3 1 1 98 5 141393947 141405369 CCAAGAAGTCATGCCTTTCC 59 141393868 141393886 GCATTCTTGTAAGGCTGCT 59 NA InUTR Rattus norvegicus 81 Olr1069 ENSRNOG00000033263 ENSRNOT00000044882 2 1 1 60 7 9465447 9465468 CAGAGCTTCTCCAAAGTTTCAG 60 9465408 9465431 GACCATGTAGATCATCAAGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm2 ENSRNOG00000030871 ENSRNOT00000046240 2 1 1 60 15 65507740 65507761 GATCAATGAAGTAGATGCCGAC 59 65507701 65507720 CATTGTCAGGAATTCAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Urm1 ENSRNOG00000026636 ENSRNOT00000037494 2 1 1 83 3 8393752 8402570 GAGGAACCCTGGGATATCC 59 8402616 8402635 TCCCTGGATGAATAGCTCTG 59 NA Rattus norvegicus 81 Olr1407 ENSRNOG00000047056 ENSRNOT00000047984 2 1 1 60 10 36499560 36499580 CCAGTGTTGACATTAGTGCTC 59 36499600 36499620 AACATATGATTCACCAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fv1 ENSRNOG00000019132 ENSRNOT00000025846 3 1 1 133 1 100224731 100225040 TACTTCCCTTCAGCCTCTG 58 100225136 100225155 TGTATGTGTAGTAGCGGTCC 59 NA InUTR Rattus norvegicus 81 Olr30 ENSRNOG00000029233 ENSRNOT00000051266 2 1 1 60 1 150225533 150225553 ATACACCCATGTACTTCTTCC 57 150225574 150225593 ACAGAAACATAGCCCATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1086 ENSRNOG00000042262 ENSRNOT00000067342 2 1 1 60 7 13699349 13699367 TACAAAGCCGTTTCAACCT 58 13699388 13699409 CATTGCTGTAGAACAAGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inip ENSRNOG00000017047 ENSRNOT00000022987 1 1 1 83 5 77022083 77022101 GGCTGAACTGGACAAAGAG 59 77021041 77022036 GACAGGGAGATGCTAGCTC 59 NA Rattus norvegicus 81 LOC102548013 ENSRNOG00000023089 ENSRNOT00000050748 1 1 1 102 9 50814204 50814222 CCAAATTCCTCGAGTAGCA 57 50813531 50814141 GTGGGATAATGTATTAAAGGCC 57 NA Rattus norvegicus 81 AABR07001099.1 ENSRNOG00000017963 ENSRNOT00000024149 3 1 1 117 1 37886580 37886599 GATGTGGCCGTTGATTTCTC 60 37886033 37886500 CAGCAAGACCCAAGAACAC 59 NA Rattus norvegicus 81 Fam98c ENSRNOG00000024036 ENSRNOT00000056964 2 1 1 83 1 88095581 88095937 AATCAACAAGGTGCTTATGGG 59 88095518 88095536 CTCTTCCAGGTAGGCATGG 60 NA Rattus norvegicus 81 Olr1417 ENSRNOG00000047803 ENSRNOT00000047037 1 1 1 60 10 43997843 43997862 CAGGATGAACTCAACAGAGG 58 43997802 43997820 AGTCATGTGGGAGGAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998,ENSRNOT00000067442 3 2 2 127 7 115907977 115908174 GAGAACGACACCAGGTCTC 60 115907868 115907888 GAAAGTGTCTTGGAACCTCTG 59 NA InUTR Rattus norvegicus 81 Fam84b ENSRNOG00000004744 ENSRNOT00000006279 2 1 1 60 7 101139931 101139950 ACCTGGTGGAGTTTGTATCG 60 101139890 101139908 AAATTGCCCACGTAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 1 1 2 173 10 15242316 15242544 GTGTTGATCACCTATGGGC 58 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 3 2 2 80 10 105127292 105128282 TTCTGCAGAATCTGGTGGA 59 105127230 105127251 TCTTGAGGCCTATCTCTTTCTG 59 NA Rattus norvegicus 81 Rn60_1_2448.1 ENSRNOG00000051301 ENSRNOT00000075935 3 1 1 60 1 237441285 237441303 CACCATGCCTACACATACC 58 237441327 237441345 GAGCAATGTCAGCCAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galnt1 ENSRNOG00000004839 ENSRNOT00000046099 1 1 1 80 7 70456791 70456811 CACCATCCTCATAAGACATCC 58 70456853 70456994 CTGATGTTGTACTGGGCTC 58 NA Rattus norvegicus 81 Paqr7 ENSRNOG00000022054 ENSRNOT00000022713 3 1 1 80 5 152708811 152708830 CCTCTTTATCTGCGACTCCA 59 152708871 152711608 ATCCATATTCTAGGCCTGTGG 59 NA InUTR Rattus norvegicus 81 Olr1151 ENSRNOG00000055639 ENSRNOT00000079046 3 1 1 60 8 19672577 19672598 ATCATCCTCGCTATTGTCTCTG 60 19672538 19672559 TTGAGAGGAAGAAGTACATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688335 ENSRNOG00000049188 ENSRNOT00000073660 1 1 1 83 8 38685464 38686113 GCTTCCTACAAGCTCTGAC 58 38686156 38686178 CTTTACAGGTAGAGTATCCTGTC 58 NA Rattus norvegicus 81 AABR07006775.1 ENSRNOG00000047214 ENSRNOT00000072116 2 1 1 111 1 257747284 257749465 GGATCTTCACACTGTACAGC 58 257749538 257749557 AGGATTCCTAGTCCAGTCCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910414 ENSRNOG00000037984 ENSRNOT00000003791 2 1 1 80 13 97953580 97953599 TTGGGATCTGATATGTCGGT 58 97953642 97954462 GGCATACTGAACTGGTGAG 58 NA Rattus norvegicus 81 Akt1s1 ENSRNOG00000020289 ENSRNOT00000027478 1 1 1 80 1 100849167 100849185 AAGATGAAGACGAGCCCAC 60 100849228 100850070 CCATCATGAAGAGACCTCCA 59 NA Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000004001 2 1 2 87 10 102193555 102193573 GATGACAACCACCCTCCTC 60 102181696 102193505 CACTGCTTGAAGACTCTGTG 59 NA Rattus norvegicus 81 Ctsf ENSRNOG00000019708 ENSRNOT00000026718 2 1 1 80 1 220117766 220118525 TAAAGAATTTGGGAGGGCTG 58 220118566 220118586 TCTGTGTTGAGAAGTTACAGG 58 NA Rattus norvegicus 81 Pigb ENSRNOG00000059622 ENSRNOT00000088562 2 1 1 80 8 79705697 79705718 TACTCTTCAGACATCTCTACCA 58 79698413 79705657 AGGTAATGAATCCTACGGGT 58 NA Rattus norvegicus 81 Atp6v0d2 ENSRNOG00000006926 ENSRNOT00000009334 2 1 1 80 5 33852520 33853851 TATACAAGTCTTACCTCGAGGC 59 33852461 33852482 GAATGGGACACATAACTTCTGC 60 NA Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000007662 3 1 2 61 3 66417567 66417586 TCCAGGGTTATGAGATCGTC 59 66416042 66417544 GGTCATGTTTCCACTTCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Fam114a1l1 ENSRNOG00000002110 ENSRNOT00000002917 3 1 1 60 9 120099568 120099589 GTTCTGATAAGATTAACCACGG 57 120099529 120099549 TAAATTTCTTCGATAGGGCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf7 ENSRNOG00000006046 ENSRNOT00000007928 1 1 1 117 6 33507241 33507259 TGATGTCGCTTTACCGGAG 60 33504476 33507160 AAGAAGCTCTGGCCTTGAG 60 NA Rattus norvegicus 81 Tmem68 ENSRNOG00000008872 ENSRNOT00000012215 1 1 1 81 5 16407341 16407359 CTCACAACTTGTGGGATGG 59 16395752 16407298 ACTTCATAACCATGCCAAACC 59 NA Rattus norvegicus 81 Sorbs3 ENSRNOG00000008829 ENSRNOT00000012056 1 1 1 80 15 51865089 51868769 TATGTGGAGGTTCTGCCTG 59 51865027 51865045 AGCATCTCCATACTCCAGC 59 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162,ENSRNOT00000050547 1 2 2 80 13 90274631 90274651 CTTATACATGTACAGCCTCGA 57 90274693 90275059 TGGGAGAGTCTGTACATGG 58 NA Rattus norvegicus 81 Catsperd ENSRNOG00000048818 ENSRNOT00000071207 2 1 1 80 9 10419152 10419173 TGATTCTGTTTGTGATCGATGG 59 10418129 10419115 CTGTTATACCGTTCACTGTTCTC 59 NA Rattus norvegicus 81 Rn60_X_0632.1 ENSRNOG00000051145 ENSRNOT00000076869 1 1 1 60 X 62519470 62519488 TCTCGGCATTCCTCATCTC 59 62519509 62519530 GTTGGATGGATTGATTGTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1158 ENSRNOG00000026232 ENSRNOT00000032963 3 1 1 60 8 19916633 19916653 CTCATTGTTCTATGGCACAGG 59 19916593 19916617 GGATTTATAGGATGTTCGAGAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uncx ENSRNOG00000001284 ENSRNOT00000001730 3 1 1 91 12 17185604 17185622 TCAATGAGAGCCACTACCC 59 17183573 17185550 TTGGAACCAGACCTGAACTC 60 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745,ENSRNOT00000059510 2 2 2 80 17 43055091 43055109 AGTGGAGAACAAAGTGCTG 58 43162928 43167461 GTTAACTCGAGCTTGGTGG 59 NA Rattus norvegicus 81 Nthl1 ENSRNOG00000012213 ENSRNOT00000016490 3 1 1 84 10 14002444 14002464 GAAGTGGACCAAGAAGATGAC 59 14002510 14002604 CTCACTCCATAGCACCCTG 60 NA Rattus norvegicus 81 Mln ENSRNOG00000042186 ENSRNOT00000067667 3 1 1 60 20 6571707 6571728 CAGATTGAAGCTTTCCTTACCA 59 6567174 6571686 CAGTCAACTGCAGTCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 3 2 2 80 2 196298038 196298211 GCATTAGCAGTGTAGTGCAG 59 196298253 196298272 GCATCTCCTCAATGTTGGTG 59 NA Rattus norvegicus 81 Dapp1 ENSRNOG00000010575 ENSRNOT00000014139 1 1 1 80 2 243182547 243182567 GATCCTAGACCTAACGGAGTG 59 243180384 243182507 GGGAACACTAAGCAGAAACAG 59 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 3 2 2 80 13 98453280 98453492 CTCTACATTCAGGTCATCCG 58 98453219 98453240 GAGGAACTTCATCTCTATGGAC 58 NA Rattus norvegicus 81 Olr1748 ENSRNOG00000048232 ENSRNOT00000089207 3 1 1 60 20 1904979 1904998 GACAGTAATGGCCTTTGACC 59 1905020 1905039 GATGGTGGTATAGTGGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem198b ENSRNOG00000006827 ENSRNOT00000008929 3 1 1 92 7 3226067 3226211 CAGCTCCAAGTTATCAGCA 58 3225993 3226011 CAGAATCAAGGTCCAGGAC 58 NA Rattus norvegicus 81 Chst2 ENSRNOG00000047734 ENSRNOT00000075305 3 1 1 60 8 103188957 103188975 GAGGTACGAGGATCTGGTG 59 103188915 103188934 CACAAAGTCATACACCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adck4 ENSRNOG00000020848 ENSRNOT00000028290 1 1 1 80 1 84061116 84061137 CTGTTTGAGTTCAGATTCATGC 58 84061178 84062653 TAGAGTCACCTTGTGGCTG 59 NA Rattus norvegicus 81 Trim27 ENSRNOG00000055917 ENSRNOT00000077363 3 1 1 80 17 45622611 45622629 CAACTGGAAGAGAAGCAGC 59 45616866 45619151 GATTCTTTCAGCCCTGCTC 59 NA Rattus norvegicus 81 Serpinb11 ENSRNOG00000002583 ENSRNOT00000003495 3 1 1 95 13 27247565 27248902 ATTCTTCTGAGTGCAGCCA 59 27248961 27248979 TGTTAGCAATGCTGAGGGA 59 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 3 2 2 84 19 25953642 25955249 CTGATGAGACGGTGAAGGT 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Serpinb9 ENSRNOG00000033772 ENSRNOT00000022194 2 1 1 80 17 32658648 32659759 CAGATATCTCAGGCACTTGGT 60 32658588 32658609 CTTGTTCAGGTTACTGAGAAGC 59 NA Rattus norvegicus 81 Olig3 ENSRNOG00000012057 ENSRNOT00000016048 2 1 1 60 1 14798221 14798241 TCTAGCCAGAAACTACATCCT 58 14798261 14798281 AACCAACCTCTTCATCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446,ENSRNOT00000077861 2 2 2 144 14 12995408 12995426 TTCGTCTTCTGCCTCTTCC 59 12995282 12995300 GATCTGCAGATGGAAACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr395 ENSRNOG00000048909 ENSRNOT00000045037 1 1 1 60 3 15689374 15689393 ACCCTCTGCACTATATCACC 59 15689411 15689434 GATACAACTACTAGAAGGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl6a ENSRNOG00000011553 ENSRNOT00000015460 2 1 1 80 2 119118958 119118979 AGTTGATGTTTGAGCACTACAG 59 119119019 119121072 AACGACCATTAGCAAATGCC 60 NA Rattus norvegicus 81 Manf ENSRNOG00000014201 ENSRNOT00000019107 2 1 1 82 8 115624632 115624651 ATCCCTGTGGAGAAGATCTG 59 115623614 115624587 AGGTCAATCTGCTTGTCGT 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 3 3 9 103 20 2087659 2087970 GTTCTGAGCACTTGAAAGC 57 2087574 2087592 ATGGTAATCAGGTTGGCTG 58 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 3 2 2 80 8 48725105 48725123 AGTTCAGGCATTGAGATGC 58 48724446 48725062 GACCACAAACTTGATCCCTG 59 NA Rattus norvegicus 81 Smim7 ENSRNOG00000042037 ENSRNOT00000066121 1 1 1 81 16 18977560 18977578 TGAGCCTGAGGTATTTCCG 59 18977623 18978628 CAAGAGCCGAACAGTACGA 60 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000041631,ENSRNOT00000027918 3 3 4 84 15 34751610 34752124 TGGAGCTGAGGAGATTATCG 59 34752169 34752189 TTCTTCAGTGACGATCTTCAG 58 NA Rattus norvegicus 81 Olr752 ENSRNOG00000029895 ENSRNOT00000040444 1 1 1 60 3 102529496 102529514 CACATTATGGGAGGAGTGG 57 102529537 102529556 CTATGTACCTGTCAAACGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076751,ENSRNOT00000087894 2 3 4 80 1 267627967 267629215 AGCTATTCTGTAAGGTCCCA 58 267629258 267629276 CCTTCAGATCCGTACAGTC 57 NA Rattus norvegicus 81 Slc17a2 ENSRNOG00000017180 ENSRNOT00000023241 1 1 1 80 17 43571791 43571810 GCATCACCCATGCATAAGTG 60 43571620 43571752 GATCTTCTGGGAGAACTAGACTG 60 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 1 2 2 80 5 156301244 156302003 CAAGAACATAGCCAGCGAG 59 156302046 156302065 TCATCCATCCATTTCAGGGT 59 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 2 2 2 80 13 47305655 47316450 CTCGGAGGGCTATCTTCTG 59 47305593 47305615 AGAGAATCACTCCAGTTAACTCC 60 NA Rattus norvegicus 81 Psmd13 ENSRNOG00000014109 ENSRNOT00000019642 3 1 1 80 1 213640002 213640022 CCGTGATCTTGTGTAAGACAG 59 213640061 213641753 CTTCAATGGTTTCCTTTGTAGC 58 NA Rattus norvegicus 81 Dnajc13 ENSRNOG00000011491 ENSRNOT00000015344 2 1 1 80 8 112741909 112741929 ATGAAACTGACCTTGCTACCT 60 112740814 112741867 CATTGTCCTGATCCCTGCT 60 NA Rattus norvegicus 81 Spata20 ENSRNOG00000003273 ENSRNOT00000004377 1 1 1 80 10 82208114 82208134 GGATGAGGGATATGATGAGGA 58 82207689 82208075 AACAGGAAGTTCAGAATCACAG 59 NA Rattus norvegicus 81 Hist3h2ba ENSRNOG00000043419 ENSRNOT00000066190 1 1 1 60 10 45289969 45289987 GTCAACGACATCTTCGAGC 59 45290010 45290029 GCTTGTTGTAATGAGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562055 ENSRNOG00000030214 ENSRNOT00000041674 2 1 1 60 10 2075142 2075162 CAGAAATTTGCCATGAAGGAG 58 2075183 2075202 TATTGAGCCTGGTGTCTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2h ENSRNOG00000039079 ENSRNOT00000019072 3 1 1 80 19 37064559 37064671 TCATTCCCTCGAGCATGAC 60 37064715 37064733 CCCTCTTCTGCAGGATAGC 60 NA Rattus norvegicus 81 Bbs4 ENSRNOG00000026171 ENSRNOT00000031262 1 1 1 80 8 64124169 64124187 TCTGACCAACCTGGAAGAC 59 64123583 64124128 ACTAAAGGGTTGCACTTATCCA 60 NA Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000079828,ENSRNOT00000066895 1 2 2 92 10 82489382 82489400 CAGAGTCCTCCAGATCCAC 59 82489140 82489327 CTGAACAACCTGACTGTAGG 58 NA Rattus norvegicus 81 Eif4enif1 ENSRNOG00000018475 ENSRNOT00000024993 2 1 1 80 14 83433400 83433421 ATAAGGACCTACGAGACTTGAG 59 83433461 83434021 TATCTCCAAACTCCCTCCTG 58 NA Rattus norvegicus 81 Mycl ENSRNOG00000014259 ENSRNOT00000019101 2 1 1 136 5 140693250 140693269 TAGTCTGGAAGCCAGTAACC 59 140696259 140696277 GTCTCTTCTCCACCGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r37 ENSRNOG00000038647 ENSRNOT00000058999 1 1 1 60 1 72210367 72210388 AGCATTTACCAGTTTGTCACTC 59 72210409 72210427 TTTCTCTGAGCATGACCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 1 2 2 80 15 55056798 55056818 TCAAACAAGCAAGTCATCGAG 59 55056860 55058368 CCAGGCAAATACCTCTCCA 59 NA Rattus norvegicus 81 Ppm1l ENSRNOG00000046168 ENSRNOT00000074564 1 1 1 80 2 166140225 166140244 GCAGCAGATCTTGTCAATCG 60 166140286 166206873 ATCAAACACGTTGTTCCTGC 60 NA Rattus norvegicus 81 Ndufb3 ENSRNOG00000011825 ENSRNOT00000016060 1 1 1 80 9 65478751 65484012 ATTGCTGTCAGACATGGCT 60 65484053 65484074 TGTCTGTAATCTGGAAGTTCCA 59 NA InUTR Rattus norvegicus 81 Rrh ENSRNOG00000053349 ENSRNOT00000085096 3 1 1 80 2 235239377 235239397 CATCATAGCTCCACTGTTTGC 60 235237895 235239338 TTCCGAAACTTCTTATTGGCAG 59 NA Rattus norvegicus 81 Hmga1 ENSRNOG00000000488 ENSRNOT00000000580 1 1 1 95 20 7137430 7137448 AAGGGAAGCAAGAACAAGG 58 7138028 7138935 CTCCTTCTCCAGTTTCTTGG 58 NA Rattus norvegicus 81 Prrg1 ENSRNOG00000026044 ENSRNOT00000066663 1 1 1 138 X 45732517 45753740 ATGGGAAGAGAATGCTGGG 60 45719069 45719087 ATTTGCTCTTGGGTAGCGT 60 NA InUTR Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892,ENSRNOT00000082192 2 2 2 87 1 188701399 188701417 TTGAGGAGGAAATGCACCT 59 188693843 188701348 ACTGCTGATCGAAGAGCTG 60 NA Rattus norvegicus 81 Lmnb1 ENSRNOG00000013774 ENSRNOT00000019351 1 1 1 80 18 51806269 51807752 ATGAAGAGGAGATCAATGAGAC 58 51807793 51807811 CATACTCAATCTGACGCCC 58 NA Rattus norvegicus 81 Lgals4 ENSRNOG00000020338 ENSRNOT00000041205 2 1 1 81 1 87021742 87021761 GAAGAAGAGCATGCCTTTCC 59 87021805 87023965 TACCACGACCTTGTAGTGC 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 3 2 2 80 8 112862172 112864051 ACCCTTTATATTGCGAGAGTG 58 112862112 112862132 ACTCCTTCAACTTAGTCATGG 58 NA Rattus norvegicus 81 Vom1r41 ENSRNOG00000029852 ENSRNOT00000049350 3 1 1 60 1 67743657 67743678 GTCAAACATATCCATACTGCTC 57 67743699 67743717 GTGTGGCTTTGTCTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf3 ENSRNOG00000015331 ENSRNOT00000041552 3 1 1 94 4 155421669 155421687 ATGCTACGTGAAGGAGCTG 60 155418515 155418535 CATCTTGGGAAGGTTTCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ptpn23 ENSRNOG00000020862 ENSRNOT00000056145 1 1 1 80 8 118641199 118651137 CTGCTGTGAAGAAGTTTGTCC 60 118641139 118641161 GTAACTCCAGCTTCTTTAGTTCC 59 NA Rattus norvegicus 81 Ptpn23 ENSRNOG00000020862 ENSRNOT00000056145 2 1 1 80 8 118633384 118633655 AGTCTATGCAGGTGCTGTC 60 118633322 118633342 CATCTTCCTCCAGTAGATCCC 59 NA Rattus norvegicus 81 Ptpn23 ENSRNOG00000020862 ENSRNOT00000056145 3 1 1 80 8 118637412 118637432 CTACACTACCTACAGAGTCGG 59 118637144 118637371 CGAGAAGATCTCAGTCCAGG 59 NA Rattus norvegicus 81 Cbl ENSRNOG00000008444 ENSRNOT00000067902 1 1 1 80 8 48489517 48490494 GAACCCACAAACTTCAATGAG 58 48489457 48489476 TCGTTCTGAGTTGATTCTCC 57 NA Rattus norvegicus 81 Cbl ENSRNOG00000008444 ENSRNOT00000067902 2 1 1 80 8 48496366 48496385 CTCACAAATGGAACCCAGAG 59 48494424 48496325 CTGCTATTCATAGTCGTGGAG 58 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 2 2 2 80 4 120446337 120446355 GGCATCAACATCAGTGAGG 59 120446399 120447134 CAGCTGCACTGAATACCTC 58 NA Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 3 2 2 82 4 157355825 157355957 ACACCACCAATAAGGTGCA 60 157355761 157355779 CACGAAGTTCCCTGATGGT 60 NA Rattus norvegicus 81 Fam189b ENSRNOG00000020518 ENSRNOT00000027828 2 1 1 80 2 188496590 188496804 CACTCTAGTGATCTCTTTCTTCTC 58 188496842 188496861 TTACAGGAGAGGACAGAACC 59 NA Rattus norvegicus 81 Ltf ENSRNOG00000031779 ENSRNOT00000047752 3 1 1 80 8 119298360 119299525 TCTATCACGATGGGAGATGC 59 119299567 119299586 TGGAACTAAACCACACTTGC 59 NA Rattus norvegicus 81 LOC100911032 ENSRNOG00000049185 ENSRNOT00000058389 2 1 1 80 4 102643972 102644369 GATTCCTGCTTCCAGAGGT 59 102644411 102644431 ATAGAGACTTGACCTCCAAGG 59 NA Rattus norvegicus 81 Rn60_6_0964.4 ENSRNOG00000056507 ENSRNOT00000083827 3 1 1 60 6 86813560 86813582 GATATTAGGAAACTGACACGTGG 59 86813600 86813620 ATCGTACTATCCTTACTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn3 ENSRNOG00000006144 ENSRNOT00000008221 1 1 1 80 4 134856738 134878483 GAGCAGGCAAGGATTTCTC 59 134856676 134856695 GGTGTAGATTCCAGCATCAG 58 NA Rattus norvegicus 81 Cntn3 ENSRNOG00000006144 ENSRNOT00000008221 3 1 1 80 4 134785749 134789464 CAAGAATAACCAGTATGGATGC 57 134785690 134785709 GGACGGATATGTAACCTGAC 58 NA Rattus norvegicus 81 Gpx3 ENSRNOG00000052564 ENSRNOT00000079830 2 1 1 80 10 40252102 40252123 GTATGCTGGCAAATACATCCTC 60 40252165 40253593 TGTAGTGCATTCAGTTCAAGG 59 NA Rattus norvegicus 81 Zkscan2 ENSRNOG00000024245 ENSRNOT00000020281 2 1 1 80 1 193457708 193457727 GAAACTTCCACTCAGGACAC 59 193454569 193457668 CAGAAGAGTGAGCATTCTTAGG 59 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 3 3 3 84 18 47505055 47505427 CATTCTAAAGGTCAGTGTAAACCC 60 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 RGD1565785 ENSRNOG00000003748 ENSRNOT00000004977 2 1 1 89 X 54390858 54408052 TCTGGTGAAGAATGCTGTC 58 54408103 54408123 CCGGTTCATTATAAGATGCAC 57 NA InUTR Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117,ENSRNOT00000080694 1 2 4 80 19 41045414 41045432 GGTTCCATGTAAGACTCCC 57 41044552 41045371 ACAATGACTCGGAATCTCTG 58 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833,ENSRNOT00000055127 2 2 2 80 3 163802796 163804450 CAGTTTCTAGAAGGCATCTACG 59 163802737 163802756 CTTCAGGATCTCACTGTTGC 59 NA Rattus norvegicus 81 Fat2 ENSRNOG00000012575 ENSRNOT00000058665 2 1 1 80 10 40654651 40654669 GGAGAGCTCCAGTACTTCC 59 40648405 40654607 AGTCTCGAGCATTCCTGTG 60 NA Rattus norvegicus 81 Olr1121 ENSRNOG00000006428 ENSRNOT00000008415 1 1 1 60 8 18719919 18719940 GGGTGTATTCCTGTTTCATCTC 59 18719880 18719898 CAGAATACCAGACGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc16a2 ENSRNOG00000002832 ENSRNOT00000040637 1 1 1 80 X 74585290 74585308 CTTGGACGTCTCGTCTCAG 60 74580699 74585246 CAGGAATGAGAGGACCTGC 60 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 2 2 2 80 14 6674564 6675267 TTCTGATGAACAGTATCCCGA 59 6674504 6674523 TTGATAGCCTCATCGGACTC 59 NA Rattus norvegicus 81 Olr285 ENSRNOG00000032092 ENSRNOT00000050657 1 1 1 60 1 173392642 173392660 ATCTCACCTCAGTCACCCT 60 173392600 173392620 GATTTGGGCTGGAGATAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xbp1 ENSRNOG00000010298 ENSRNOT00000014044 2 1 1 80 14 85754746 85754765 CGAGATAGAAAGAAAGCCCG 59 85754806 85756279 TAGCTGGAGTTTCTGGTTCTC 60 NA Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217 2 1 2 94 10 89908302 89908320 AGGCAGAATCGTGAGATCG 60 89904861 89908245 CAGGATAGAGTCTTGCCCTC 59 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000087573 3 1 2 81 1 220047525 220047543 GCCTTTGTACACATGGAGC 59 220042759 220047482 TTCGTTTGCCTTGAAACTCTG 60 NA Rattus norvegicus 81 Tox ENSRNOG00000010777 ENSRNOT00000014661 3 1 1 83 5 19894497 19902191 CCATGCAGCAAGGATTTACTC 60 19894434 19894452 CTTGGGTGACAACTTGTGC 60 NA Rattus norvegicus 81 Olr621 ENSRNOG00000060243 ENSRNOT00000084665 3 1 1 84 3 76544289 76544309 CTGTAAGCCTCTAAGGTACAC 58 76544354 76662496 AATACAAGACCCTACCCAGG 59 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 3 2 2 80 6 27491771 27491791 ATAAGCATGTACCTGATTGGG 58 27487515 27491733 TTCCATCTACTCCATCTAGAGTG 59 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 1 1 1 60 10 13000187 13001430 AAGCTGACTGAGCATTTGC 59 13001451 13001472 CAAGATTTGCAGACCAGTAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 2 2 2 80 12 6949105 6949124 GAAGCTGTTCGAAACCTACC 59 6944182 6949064 TTACAATCTTCACCTGTGACG 58 NA Rattus norvegicus 81 Tex2 ENSRNOG00000013659 ENSRNOT00000055114 3 1 1 80 10 94708734 94708754 TCCTCTGAGGAAGATGATCCA 60 94707080 94708693 ACCTCCAACATACCCTTCAG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915,ENSRNOT00000018185 2 2 5 82 7 120771635 120771739 GATCAAATCAGGCCTGACC 58 120771571 120771589 AGGAAATCCTCTGCAAGCT 59 NA Rattus norvegicus 81 Rln3 ENSRNOG00000005911 ENSRNOT00000007775 2 1 1 212 19 25166496 25166514 CAGCTGATCATGGCAACTC 59 25164740 25164758 TCCATCAGCGAAGAATTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmco5a ENSRNOG00000005100 ENSRNOT00000006809 2 1 1 80 3 108547119 108547140 AACTACACAGTGATGGAAAGAG 58 108547179 108548649 AGTCTCATTCTTCCTCTCCAG 59 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 2 2 2 129 13 45316565 45318783 CCATGGAAATATACACTTCGGA 58 45316457 45316475 AAATAGATGGTGGGCAGGA 58 NA InUTR Rattus norvegicus 81 Slc25a37 ENSRNOG00000015495 ENSRNOT00000021636 1 1 1 80 15 51129203 51131474 ATGAATCCAGCAGAAGTGGT 59 51129142 51129160 TGTCCGGATACAACTGAGG 59 NA Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000052412 3 1 2 84 10 61974739 61979607 GTGTGAGGGTTATTGCAGC 59 61979655 61979673 AGAGGCTCTTCTTGTCCAC 59 NA Rattus norvegicus 81 Fxyd7 ENSRNOG00000021067 ENSRNOT00000028603 1 1 1 92 1 89477254 89477272 CTATCATGTTCGTGCTGGG 58 89476835 89476951 ATTTGCATGTTGGGCTCTC 59 NA Rattus norvegicus 81 AC106663.5 ENSRNOG00000061438 ENSRNOT00000067997 2 1 1 60 14 86751560 86751578 AGAAGGGAGACAGTTCTGC 59 86751602 86751620 ATCACAGGTCCTGTTAGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr310 ENSRNOG00000045726 ENSRNOT00000074710 1 1 1 60 1 213348735 213348755 TGTGCTCAGTGCCTATATCAG 60 213348774 213348795 GGTAAACTTGCTTCTTTCTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ushbp1 ENSRNOG00000023485 ENSRNOT00000040393 1 1 1 80 16 19786274 19786612 GCTCTACAATATAGCAAGGACTG 59 19786216 19786234 AACTCCAGCTCCTAGACCA 60 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000011494 ENSRNOT00000057222 2 1 1 81 X 105404878 105404897 CAGATCTAAGAGGATGCTGG 57 105404941 105405273 GATCACTTGGCCCTTTCTC 58 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 2 2 3 80 13 50485664 50488200 AGTTTGCAGGTGTGAATGAG 59 50485603 50485622 CCAGATAATAGCGTAGCCAC 58 NA Rattus norvegicus 81 LOC500028 ENSRNOG00000013438 ENSRNOT00000017955 3 1 1 80 17 49610679 49612136 GAGTCCAAGAAGGTTACAGAG 58 49612175 49612196 CTTTATAGCCTTGATTGAAGCC 58 NA Rattus norvegicus 81 AABR07039936.1 ENSRNOG00000037770 ENSRNOT00000041508 3 1 1 80 X 88298420 88298441 AGTTATTACTTGGCATGACAGC 59 88298482 88299462 TCCTGAGAGTCACGAACAC 59 NA Rattus norvegicus 81 Klhl32 ENSRNOG00000007441 ENSRNOT00000050653 3 1 1 81 5 39032750 39063229 TCTCATCCAGGAACTAAATAGC 58 39032690 39032709 CTTCTCCAACAAAGTGAGGT 58 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000026088 2 1 2 64 1 80974455 80974473 CTCACATTTCCACACGCAC 60 81099311 81099332 CGCACTCTTCACATTTATACGG 60 NA DesignNoJunction Rattus norvegicus 81 Notch3 ENSRNOG00000004346 ENSRNOT00000037456 3 1 1 80 7 14179258 14179387 ATGAGTGCTCTATTGGTGCT 59 14179197 14179216 CACACTGGCACAAGAATGAG 60 NA Rattus norvegicus 81 AABR07040944.1 ENSRNOG00000005430 ENSRNOT00000007194 1 1 1 69 X 115375070 115375111 CTAACTCCTCAGGGACAGAG 59 115375020 115375038 AATGCTTCTTGTTGGCAGC 60 NA DesignRelaxed Rattus norvegicus 81 Fam92a1 ENSRNOG00000016338 ENSRNOT00000022249 1 1 1 80 5 25743977 25747337 CATGTAATTTCGCAGGCAG 58 25743915 25743933 AGTTTCCTCCAGATGACGA 58 NA Rattus norvegicus 81 Pcdh11x ENSRNOG00000030330 ENSRNOT00000045001 3 1 1 136 X 92596676 92655602 AAACAGTAGTATATCGTGGGC 58 92655700 92655718 ATAATTCTTCTCCTGGGCG 57 NA InUTR Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 2 2 2 80 7 75416456 75418652 CGTAAAGTGTTTGTTGGTCG 58 75416395 75416413 ATTGGTGAACTCCTTTGCC 58 NA Rattus norvegicus 81 Fam129c ENSRNOG00000039357 ENSRNOT00000034589 1 1 1 83 16 20035109 20035737 GTAACTTGGAAACGCCTGAG 59 20035783 20035801 CATCCCTGTAGACACCCTC 59 NA Rattus norvegicus 81 Srm ENSRNOG00000011078 ENSRNOT00000014934 2 1 1 80 5 165406199 165406956 TCGATGAGGATGTCATTGAGG 60 165406998 165407016 GGAGAGTCAGCTTTGAGCT 59 NA Rattus norvegicus 81 Azgp1 ENSRNOG00000001333 ENSRNOT00000001801 2 1 1 80 12 19200171 19200190 GAGGAGTGTCCTACAATGCT 59 19200232 19202029 TTTCACAGTGGGAGGATCTG 60 NA Rattus norvegicus 81 Fam160a1 ENSRNOG00000048256 ENSRNOT00000071580 1 1 1 80 2 184986188 184993053 ACCTACTTCTGTCCAGTGC 59 184986126 184986144 CTCACCCTTCTCTTCCAGC 60 NA Rattus norvegicus 81 Slc39a13 ENSRNOG00000011981 ENSRNOT00000016191 3 1 1 81 3 79888493 79890535 ATGTTACAATCAGAAGCTGGAG 59 79888433 79888451 GAAACACATTGCCCAGGAG 59 NA Rattus norvegicus 81 Cxcl12 ENSRNOG00000013589 ENSRNOT00000066670 3 1 1 80 4 149264118 149266238 TTCAGATTGTTGCAAGGCT 58 149266282 149266300 CCAGGTACTCTTGGATCCA 58 NA Rattus norvegicus 81 Slc22a12 ENSRNOG00000021108 ENSRNOT00000028665 3 1 1 86 1 221915519 221915857 CATGCCTCAGATAGGTTTGG 59 221915452 221915470 CATGAGGGCAGCTATTGTG 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 2 1 3 139 13 50559945 50559964 TCTGTTTCCAGTGCAATGTG 59 50559173 50559843 TTGCAGTCAGAGCTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 1 2 2 80 10 82185688 82185872 CATCTTCCAGGTCATCACAC 58 82185627 82185648 ATGAAGTTGTAGAAGGAGTGAG 58 NA Rattus norvegicus 81 Ceacam18 ENSRNOG00000022701 ENSRNOT00000038229 1 1 1 80 1 99566520 99566539 GTGTGCCATAGAAGATGTCC 59 99566581 99569148 ACATAGTCTGGTCCATAGGC 59 NA Rattus norvegicus 81 Stk17b ENSRNOG00000012502 ENSRNOT00000016856 1 1 1 81 9 60416172 60420826 CGAAAGAACTTGGGAGAGGA 60 60416110 60416129 AATTTGGCAGCATACTCCTG 59 NA Rattus norvegicus 81 Sema5b ENSRNOG00000002238 ENSRNOT00000030074 2 1 1 80 11 68343804 68343822 CTGGAGTCCGGGATTTCTC 60 68339220 68343760 TGAAGAGGTAGTTCCTGGC 59 NA Rattus norvegicus 81 Entpd6 ENSRNOG00000007427 ENSRNOT00000009946 1 1 1 80 3 146566244 146567463 GATAGCAGCCAAGTATGTCTG 59 146567505 146567523 ATGTAGGTGAGGTCCATGC 59 NA Rattus norvegicus 81 Mms19 ENSRNOG00000046769 ENSRNOT00000075531 3 1 1 80 1 261192157 261192175 CTTTAGCCAAGCCTCTGGA 59 261192017 261192114 CCAGTAGGAACCATTCTCCC 60 NA Rattus norvegicus 81 Rn60_5_0815.7 ENSRNOG00000051118 ENSRNOT00000076023 3 1 1 80 5 77489988 77490354 GCTCTACGGTAGAACAAAGGA 60 77489928 77489947 CTAGTGATTACATGCGCCTC 59 NA Rattus norvegicus 81 Wfdc11 ENSRNOG00000033980 ENSRNOT00000067008 2 1 1 80 3 161130638 161131530 AAAGAACAAGTATTCTCCGGG 58 161130578 161130596 CACTTCTTGGTACAGTCGT 57 NA Rattus norvegicus 81 E2f4 ENSRNOG00000015708 ENSRNOT00000021145 1 1 1 80 19 37253841 37253859 CAGAGGACGTCCAGAACAG 60 37254193 37255037 CAAGGAGGGTATCTCCAGC 59 NA Rattus norvegicus 81 Uba2 ENSRNOG00000021113 ENSRNOT00000028672 3 1 1 80 1 90025329 90025347 ACAATGGACAAACTCTGGC 58 90024238 90025285 GGCTTCTTCTCCTTGACTC 58 NA Rattus norvegicus 81 Olr383 ENSRNOG00000050605 ENSRNOT00000040049 1 1 1 60 1 230765665 230765683 CGGTGGTTATCCCTATGCT 59 230765623 230765642 TCCTTCACTTCCTTGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911002 ENSRNOG00000050177 ENSRNOT00000071895 2 1 1 80 1 146989344 146989457 TTATCGTGGAAACGCAAGAG 59 146989498 146989518 TTTCTTCAGAGCAGTCATGGA 60 NA Rattus norvegicus 81 F11r ENSRNOG00000004414 ENSRNOT00000006141 3 1 1 80 13 89846473 89846603 TTCCTGAGAACGACTCTGTC 59 89846646 89846664 CTTGGACGAACTTCCACTC 58 NA Rattus norvegicus 81 Nrbp1 ENSRNOG00000050570 ENSRNOT00000074938 1 1 1 80 6 26488502 26488732 GACACCAACATATGATCCCA 57 26488441 26488460 GGATTTCAGCTAGTACAGCA 57 NA Rattus norvegicus 81 Rn60_5_0814.32 ENSRNOG00000051091 ENSRNOT00000076117 2 1 1 90 5 77311530 77312211 CTCGATGGGAAATCAAGATCC 59 77311460 77311479 GTTCTTATTCGCCCTCACTG 59 NA Rattus norvegicus 81 Grb2 ENSRNOG00000003990 ENSRNOT00000005347 2 1 1 89 10 104196479 104201858 CCTGTCAGTCAAGTTTGGA 57 104196408 104196427 TTAAACTTCACCACCCACAG 58 NA Rattus norvegicus 81 Mir672 ENSRNOG00000040357 ENSRNOT00000062110 1 1 1 62 X 74982122 74982140 TTGAGGTTGGTGTACTGTG 57 74982078 74982096 CTTTCGAAGATGGCGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 3 2 2 81 3 165520822 165522726 ACCTGAAGGTACACTACATGAC 60 165520762 165520782 ATGGTATTCTCTATGGCCAGC 60 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000066691 3 1 2 154 1 219311922 219311945 CACCTTACACCATCATCTATTTCC 59 219311266 219311401 GATCTGCCCAAACAGACAG 59 NA Rattus norvegicus 81 Cyp2c7 ENSRNOG00000046080 ENSRNOT00000030039 3 1 1 88 1 147583931 147585433 TTATTTCATTCCCAAGGGCAC 59 147585483 147585501 CAAACTTCTCTGGGTTGGG 58 NA Rattus norvegicus 81 LOC100362978 ENSRNOG00000045804 ENSRNOT00000039860 3 1 1 146 11 67437908 67440353 CCTTGCTGACAAAGTCAGAG 59 67436441 67436459 ATGTGGAGGAAACAACCAC 58 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975,ENSRNOT00000014078 2 2 2 60 14 75881085 75881103 ATCAGAGACCCTTTCCCTG 58 75881127 75881145 TCTGTGGAGACAGCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305537 ENSRNOG00000045696 ENSRNOT00000073995 1 1 1 80 10 1470154 1470174 CAAAGCAAACTGCATTCTTCC 59 1470212 1470237 TTCTTCACTCCGTTTATAGGAGG 60 NA Rattus norvegicus 81 AABR07058366.1 ENSRNOG00000025046 ENSRNOT00000035216 3 1 1 86 7 112057226 112057245 TAGTTGAGGTCAAGGAAGGG 59 112057294 112058126 TATTGTTCCAGACAGGGCT 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000076284 2 1 4 80 13 76055842 76166865 ACTTCGTGCTGGAGATCTC 59 76166909 76166927 AAGTACCATTCTCCAGCCA 58 NA Rattus norvegicus 81 Pcdh20 ENSRNOG00000013306 ENSRNOT00000017765 3 1 1 60 15 71778823 71778841 CATCTACATCGTCCCAGCA 59 71777703 71778799 AAAGCAGAACAACATGCGG 60 NA DesignRelaxed Rattus norvegicus 81 Atp5h ENSRNOG00000003626 ENSRNOT00000004836 3 1 1 80 10 103968765 103968784 ATGCTCTGAAGATCCCTGTG 60 103967725 103968724 CACAGTTCTTCACATCCTCCT 60 NA Rattus norvegicus 81 Slpil3 ENSRNOG00000049280 ENSRNOT00000076624 3 1 1 80 3 160777036 160777055 GCCTCTTTCCTTTCATGGTG 59 160776409 160776995 TGACAGCATCATTGTTGTTCC 60 NA Rattus norvegicus 81 Wdr64 ENSRNOG00000038083 ENSRNOT00000065706 3 1 1 80 13 93852047 93852888 AGTAGCAAGGGAAGTAAGCA 59 93853753 93853771 TGACTGCTGTTCTGATCCT 58 NA Rattus norvegicus 81 RGD1564114 ENSRNOG00000028805 ENSRNOT00000049889 3 1 1 80 3 7535836 7542354 AACAGAAGGTAATCCTGGGA 58 7535775 7535793 TATCCAGCTTCACAGGAGG 59 NA Rattus norvegicus 81 Slamf6 ENSRNOG00000038286 ENSRNOT00000029315 3 1 1 80 13 90314152 90314173 TCATACACTGCACAGATAACCA 60 90314212 90316211 ACTTAGTCGTTCAAAGACCCT 59 NA Rattus norvegicus 81 Cd33 ENSRNOG00000037331 ENSRNOT00000047473 1 1 1 80 1 98398684 98398772 TTGCTGTGTACAGACTCCC 59 98398816 98398834 CAAGGCCTCCTCTACTGTC 59 NA Rattus norvegicus 81 Rn60_5_1061.2 ENSRNOG00000025809 ENSRNOT00000035806 1 1 1 60 5 101997505 101997524 CAGAAATCGCCTGTTCAGAG 59 101997547 101997565 GCTTTCTCCGAAACCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf23 ENSRNOG00000017657 ENSRNOT00000024079 3 1 1 81 10 56608309 56608327 CAAGATGGAGATGGCAGCT 60 56608368 56608498 ATGAGTCATCACCTGATTCTACC 60 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 2 2 2 87 17 55127086 55127105 GAACTGCAGTCAGAAGACAC 59 55127155 55128488 ACTTGGTTTCCCTCTCCAG 59 NA Rattus norvegicus 81 Ppfia3 ENSRNOG00000020731 ENSRNOT00000028142 2 1 1 80 1 101346914 101346932 CTCTACATGATGCCAACGA 57 101346756 101346870 GGCTCTTCTCTTCACTCTG 57 NA Rattus norvegicus 81 Olr384 ENSRNOG00000032117 ENSRNOT00000041509 3 1 1 60 1 230811963 230811986 TCCACATACCTATGTACTTCTTCC 60 230811999 230812023 GAGGTATAACAAGTATCCAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plb1 ENSRNOG00000026037 ENSRNOT00000061176 3 1 1 80 6 25431364 25432357 ATGTGTCCAAACCAGACCT 59 25430882 25430902 CTCACAAGACATCGAAGTTCC 59 NA Rattus norvegicus 81 Tas1r1 ENSRNOG00000009708 ENSRNOT00000013385 1 1 1 80 5 169201476 169204572 CTTTCTCAACATGAGTGAGCT 58 169201416 169201434 AAGCAAGTAGTGCTCTCCT 58 NA Rattus norvegicus 81 Tas1r1 ENSRNOG00000009708 ENSRNOT00000013385 3 1 1 80 5 169201472 169204568 CTCAACATGAGTGAGCTTCAC 59 169201412 169201430 TGGGAAGCAAGTAGTGCTC 60 NA Rattus norvegicus 81 Fzd2 ENSRNOG00000021962 ENSRNOT00000032944 3 1 1 60 10 90551198 90551216 GGGCACTAAGAAAGAAGGC 59 90551238 90551258 GGCCATACTGAAGAAGTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1115 ENSRNOG00000050583 ENSRNOT00000041855 2 1 1 60 8 17775950 17775971 AGGTACACAATCATCATGAACC 59 17775911 17775931 AGAGTAGGGAGAGTAGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr783 ENSRNOG00000047060 ENSRNOT00000047208 1 1 1 60 3 103203257 103203276 GGTGTCTGAGTTTGTGTTCC 59 103203216 103203238 GAAGAGAAATAACTGGATTGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp618 ENSRNOG00000006719 ENSRNOT00000037313 1 1 1 80 5 78951902 78951923 AATAGGAGCTCACAGAATTCCA 59 78953402 78954318 CGTGTAAGGTTTCTGCAGG 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 2 4 7 81 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000078880 3 1 7 60 20 2517342 2517363 TCTAGATTTCAAACCGTCAGAG 58 2517382 2517402 CACGTTCTCCTTAGAAAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 3 2 3 80 X 65279638 65280648 ACTCAATAAGAAGGTGACTGC 58 65280690 65280708 TCTGGATAGAACTTGGCCC 59 NA Rattus norvegicus 81 Txnip ENSRNOG00000021201 ENSRNOT00000028793 3 1 1 80 2 198683543 198683561 GTGCAAACAGACCTTGGAC 59 198683605 198684010 ACCATCTCGTTCTCACCTG 59 NA Rattus norvegicus 81 Cdh13 ENSRNOG00000014371 ENSRNOT00000019298 3 1 1 80 19 51842847 51885448 CCAAGAAAGAGTTTCAAGCCA 59 51885488 51885508 GGTCATCTTTGTCTTCCACTG 59 NA Rattus norvegicus 81 RGD1309748 ENSRNOG00000002545 ENSRNOT00000003439 2 1 1 80 10 6858357 6858377 TACTTCAACGGAAACTAGCTC 58 6844087 6858315 CCACTAAGACCATGCAGAG 58 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 3 3 3 81 17 59742610 59746541 CTAAGACTCGAGGGAGAAGC 59 59746585 59746603 TCTGGGTTAGGAAGGAAGC 59 NA Rattus norvegicus 81 Fbxo16 ENSRNOG00000014003 ENSRNOT00000018762 3 1 1 82 15 48705770 48705788 ACTTCAAGCAGCAGTTTCG 59 48705833 48723100 CAGGGACATCAATGACTGTG 59 NA Rattus norvegicus 81 Ppia ENSRNOG00000027864 ENSRNOT00000091873 2 1 1 69 14 86673832 86673850 GTGTTCTTCGACATCACGG 59 86673883 86675729 CTTTGTCTGCAAACAGCTC 58 NA DesignRelaxed Rattus norvegicus 81 Heg1 ENSRNOG00000001793 ENSRNOT00000002443 1 1 1 80 11 70264286 70264306 GTTCAACAAGATGGATCACTC 57 70254319 70255104 AATGGGCAACTCATACAGG 58 NA Rattus norvegicus 81 Bsph2 ENSRNOG00000046669 ENSRNOT00000071105 3 1 1 84 1 75847750 75849603 GACTGAATGCAGAATTGATCTC 58 75842516 75842537 GCATAGACAAATGGAAAGACAC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000085906 3 2 8 80 13 68718784 68718802 ACAGATCACTGGTCCTTCC 59 68718845 68718954 ATAAAGCTGTCCCATCAGCA 60 NA Rattus norvegicus 81 Scgb3a2 ENSRNOG00000026912 ENSRNOT00000037796 1 1 1 80 18 38292909 38295128 TTTGTGGTTATTCTGCCACTG 59 38295167 38295188 TGTCCAAAGGTAAAGGTAACAC 59 NA Rattus norvegicus 81 Vom1r95 ENSRNOG00000048956 ENSRNOT00000072082 3 1 1 60 4 121822713 121822731 CTCTGAGATAGGCATCGGG 59 121822671 121822689 CATGAAGGTGTGGAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw5 ENSRNOG00000028674 ENSRNOT00000034089 3 1 1 80 3 2728379 2728697 GACTGCACAGTGAAGATCTG 59 2728740 2728758 ACTCCAGTTGTATGGCCTC 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313,ENSRNOT00000039652 1 2 4 80 2 8935255 8938878 TATGGAAGAGGTGCCATCTG 59 8935194 8935214 GGACTTGTCTTCAAATCAGGG 59 NA Rattus norvegicus 81 Pex13 ENSRNOG00000054896 ENSRNOT00000081405 1 1 1 80 14 108396104 108401921 CGATGAAGTAACAGACAGCAC 59 108396044 108396062 GCGGCAAAGTCGTATTCTG 60 NA Rattus norvegicus 81 Gpr153 ENSRNOG00000010718 ENSRNOT00000014444 3 1 1 80 5 169460397 169460829 AGGACTCAGACAACGAGAC 59 169460873 169460891 CACCTCCATAGTCAAGGGA 58 NA Rattus norvegicus 81 Imp4 ENSRNOG00000013285 ENSRNOT00000066913 1 1 1 80 9 37770683 37770703 TGTCTACAAGAAGACAGACCA 59 37770538 37770643 CGAATCATGTACAACTTGAGC 58 NA Rattus norvegicus 81 Mterf ENSRNOG00000007899 ENSRNOT00000010425 3 1 1 175 4 27365450 27366897 GCTGTACCGTTGGATTTCTC 59 27371100 27371121 GCCATTATCACAGGATAGTCCA 60 NA InUTR Rattus norvegicus 81 RGD1565158 ENSRNOG00000040121 ENSRNOT00000061709 2 1 1 80 10 1834700 1834721 TGATTTGTCTACAGTAGAGCAC 58 1834762 1837692 AGTGAAGTCCTGTTCCTCC 59 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 3 2 2 80 12 17547848 17547867 TTCAGTTCCTGTACAGGGAG 59 17546457 17547806 TGAGGACTTCTAGCACAGTG 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730,ENSRNOT00000088197 1 2 2 80 14 76799214 76799233 CCAGACAAAGCCAGAATCTC 59 76799276 76802638 TAGGAAGAGCTGGCAATGG 60 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730,ENSRNOT00000088197 3 2 2 80 14 76819722 76819742 GCAGAATGAATGGTACATTGG 58 76819783 76824228 AAAGTACCATCCTTGCTCTC 57 NA Rattus norvegicus 81 Adamdec1 ENSRNOG00000030724 ENSRNOT00000028974 3 1 1 80 15 49495994 49496013 CAGTGAGAAGCAAATTGGCA 60 49495738 49495954 TGAAGTGAGTTTACATTTGGGC 60 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832,ENSRNOT00000089460 1 2 2 80 10 15990138 15992386 GACCATTACGAGCTGTGGA 60 15990076 15990095 GGTCAGTATCGATTCCAGCA 60 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 3 2 2 81 7 97042784 97047404 AGTACCACTCAGGTCAACTC 59 97042722 97042742 AACAAGTGTTAGTGCAGACAG 59 NA Rattus norvegicus 81 Papolg ENSRNOG00000006261 ENSRNOT00000008919 3 1 1 80 14 108646329 108649609 TGAAAGTAAGAATCTCCCACCT 59 108646270 108646289 ACTCCAAGCCTGTAAGATCC 59 NA Rattus norvegicus 81 AABR07054332.1 ENSRNOG00000005116 ENSRNOT00000006859 3 1 1 109 3 148283640 148283662 GGTGTTAAGTCCAAGGAGGT 59 148283734 148283752 GGCTTGCCAATCTTGTTCC 60 NA Rattus norvegicus 81 Ccdc115 ENSRNOG00000013234 ENSRNOT00000082531 1 1 1 66 9 37775591 37775609 GTATGGAGCCTCAGGTCTG 59 37775770 37775788 ATCACTCTGAAGGTCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 3 1 1 61 10 42942658 42942678 TCACTATGGAGAAGTCCACTG 59 42942701 42944134 TTCCACCTCTGCTATGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Gpr1 ENSRNOG00000045532 ENSRNOT00000072737 1 1 1 60 9 69959312 69959331 CTTCATGGTTTGCTGGACTC 59 69959271 69959290 GTGATGAATGCTGAGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr1 ENSRNOG00000045532 ENSRNOT00000072737 2 1 1 60 9 69959312 69959330 TTCATGGTTTGCTGGACTC 58 69959270 69959289 TGTGATGAATGCTGAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf187 ENSRNOG00000049219 ENSRNOT00000073082 1 1 1 109 10 45274499 45275083 ATGCTTCTGCAGTGATGAC 58 45274408 45274427 CCTAAGGGATGTAGGTAGGG 58 NA InUTR Rattus norvegicus 81 Icmt ENSRNOG00000010953 ENSRNOT00000014625 1 1 1 83 5 169477782 169477800 AGTCTGGAGTACACAGTGG 58 169477847 169478538 AATCTGCTTCAGTTCTGGC 58 NA Rattus norvegicus 81 Lce1f ENSRNOG00000023892 ENSRNOT00000056485 1 1 1 169 2 192991062 192991080 TTCTTCCTGCTGTAGCCTG 59 192990911 192990930 TACAGCATCCAGAACTGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcsam ENSRNOG00000022110 ENSRNOT00000043020 1 1 1 81 11 60174570 60174591 CACATTTAAAGCTCGACAAGAG 58 60172327 60173212 GGTCTCATTAGCATTGTCCTG 59 NA Rattus norvegicus 81 Apoh ENSRNOG00000003566 ENSRNOT00000004756 2 1 1 80 10 96642087 96642105 ATGGAGTTGTACGCTACAC 57 96642148 96644264 TCCCGTTCAGATAATACCCA 58 NA Rattus norvegicus 81 AABR07051652.1 ENSRNOG00000055193 ENSRNOT00000074650 3 1 1 60 3 18707000 18707018 ACACAGTCTCCACATTCCC 59 18707040 18707060 CTAGACATTCGATGGAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctxn1 ENSRNOG00000001057 ENSRNOT00000001399 2 1 1 215 12 2534364 2534384 AGTCCCAAGAAAGAGAAAGAG 57 2534964 2534982 TCAACAGAACCAACACCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcnt ENSRNOG00000001276 ENSRNOT00000048218 2 1 1 80 20 12958931 12961565 AACAGAATGGGTCATGGGAG 60 12961608 12961626 GAGCGAAGTCTGACCTGAG 60 NA Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 2 1 1 63 2 115362914 115363888 GCAGAAAGACAAGAAGCCT 58 115363914 115363933 TACTGGATGAGTAAGGTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Oit3 ENSRNOG00000046365 ENSRNOT00000075682 2 1 1 80 20 29017310 29020350 AGACTTGCGAAGACATCGA 59 29017248 29017267 GATAACCCTTCTCAGACCCA 59 NA Rattus norvegicus 81 Lcp2 ENSRNOG00000005620 ENSRNOT00000046135 1 1 1 80 10 19024237 19027163 CCTTACTGGGAAAGAAACCCT 60 19027424 19027444 AAGGAGGCTTCTGTATCTTGG 60 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 2 2 2 80 4 84027093 84052318 ATTCCATCAGGTAATCGTCC 57 84027032 84027053 CGATTGATCATATCGAAAGACC 57 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 3 2 2 80 4 84027094 84052323 GGTAAATTCCATCAGGTAATCGTC 60 84027037 84027059 GATCATATCGAAAGACCTCAGTG 59 NA Rattus norvegicus 81 Rn60_5_0814.18 ENSRNOG00000051035 ENSRNOT00000076876 3 1 1 60 5 77778065 77778085 AAGAAGAGTGGTGTTCTTCAG 58 77778025 77778044 AGTCTGTGCATACTACTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Baiap2l1 ENSRNOG00000001007 ENSRNOT00000060843 1 1 1 80 12 12304978 12304998 ATAAAGACGCCCATCTCTACC 60 12305037 12306224 TTTCCCAATCATCTTGCTTCTC 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 3 2 2 107 9 14501676 14501694 ATACCTCCTTGCTGGATGC 60 14500323 14501607 AGGTGTAGAGACTGAAGTGAG 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076372 3 1 5 123 2 30665210 30666571 TAGATGTCAGGTACACCAGG 58 30667388 30667407 CCATGATATCCGGTGATCAG 58 NA InUTR Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 2 1 1 75 7 116633698 116633830 AAACTGACACAGGTGTCCT 59 116633869 116633887 TCCACTGTCTTCACGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pxmp4 ENSRNOG00000016975 ENSRNOT00000022914 3 1 1 86 3 150098255 150101806 GAGTGGCAGTCTCCAAGAG 60 150098187 150098205 TAGGTGAAGACGAAGCAGG 59 NA Rattus norvegicus 81 Atp5g1 ENSRNOG00000007235 ENSRNOT00000009815 2 1 1 80 10 83896994 83897940 TCATTTCTCCAGTTCTGATCC 58 83896934 83896952 CCTCTGGTCTACTCAGGAG 58 NA Rattus norvegicus 81 Kcna5 ENSRNOG00000019719 ENSRNOT00000026691 1 1 1 60 4 159077455 159077476 TACTTCTATCATCGGGAGACAG 59 159077416 159077434 TGCCTTGTTCTTCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564313 ENSRNOG00000054473 ENSRNOT00000074310 2 1 1 60 2 194433962 194433983 GTATTACAAGCCCAGTGTTCTC 59 194434003 194434022 ATTGTCAAACACCATTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1456 ENSRNOG00000046792 ENSRNOT00000052167 3 1 1 60 10 44730373 44730394 CAACAGGCTTCATTCTCTTAGG 59 44730415 44730433 ACAAAGAGGAACAGGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509,ENSRNOT00000065300 2 2 2 80 3 8936301 8936321 ACACTCTGAGTGGTATCTCCT 60 8936363 8936997 TGACCATTACCATCGAGGC 60 NA Rattus norvegicus 81 Slfnl1 ENSRNOG00000009906 ENSRNOT00000013193 3 1 1 200 5 139471801 139472011 GTGCCTCTCAAGGTACTCC 60 139472778 139472796 CACATCCACCTTCTCCTCC 60 NA Rattus norvegicus 81 Nrgn ENSRNOG00000010688 ENSRNOT00000014404 1 1 1 113 8 40016595 40016613 AAAGAGTGGAGAGTGTGGC 60 40016299 40016521 CGTTCAGTTCTGGCTTAATCTC 60 NA InUTR Rattus norvegicus 81 Wdtc1 ENSRNOG00000008377 ENSRNOT00000011311 1 1 1 82 5 151491612 151491630 TACCAGTTCCGCTACTGTG 59 151490595 151491566 ATGTACTGAGCATTGCTGC 59 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089551,ENSRNOT00000089805 3 3 4 80 2 78253003 78253024 AGTCTCTTGGACTGATAATGGG 59 78253063 78255030 CGGTCAAGATCATCAGAAGTG 59 NA Rattus norvegicus 81 Nudcd2 ENSRNOG00000060914 ENSRNOT00000086814 3 1 1 80 10 25893314 25895545 CCAGAAAGAGAATCCTGGG 57 25895588 25895607 TTTGAGAAATCTGGTCCACC 58 NA Rattus norvegicus 81 LOC100360056 ENSRNOG00000031802 ENSRNOT00000051411 1 1 1 60 1 141218138 141218159 CCTACTATACCCAGGTTTACCA 59 141218180 141218198 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timd2 ENSRNOG00000021345 ENSRNOT00000059468 1 1 1 80 10 31767606 31767625 TGTACCAACATCAACCAGAG 58 31765007 31767564 GTAGTGGCTTCTGATCTGTG 58 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661,ENSRNOT00000005637 3 2 2 80 6 54561925 54561946 TAGATGACCTTTCAAGTGTGAC 58 54561986 54566982 GATCATTACAAACGCCAGTG 58 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 3 1 1 207 14 78973704 78973722 ATCAAGACGCAGGTAGAGG 59 78973893 78974160 AATCCATTGGCTGGAAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Crybb3 ENSRNOG00000047673 ENSRNOT00000071328 3 1 1 122 12 49565996 49566014 TTCTCCTCCAGTTTGAGGC 59 49566100 49566750 TACACCGTCACCTTGTAGC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Slc12a4 ENSRNOG00000019651 ENSRNOT00000026730 3 1 1 80 19 37933890 37938756 GGAAGACTCGGATGGACAG 60 37933828 37933847 TAGTCATTTCCTCTGGAGGC 59 NA Rattus norvegicus 81 Rn60_X_0648.1 ENSRNOG00000055020 ENSRNOT00000092230 2 1 1 60 X 64721456 64721475 TGAGGAAGCTGTTTATTGGT 57 64721495 64721516 TGTTCTCTTAAGCTGTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382,ENSRNOT00000083264 2 3 3 80 7 107467362 107467823 CATCTTTGAGTACCAAGTGGA 58 107467865 107467883 TCATCCTGCTTCAGAAAGG 57 NA Rattus norvegicus 81 Mrpl27 ENSRNOG00000003724 ENSRNOT00000004947 2 1 1 80 10 82378243 82378262 GGTGGCAGTTCTAAGAACCT 60 82378304 82378681 ATGAACGTAGTGACCTTCCA 59 NA Rattus norvegicus 81 Glis2 ENSRNOG00000004766 ENSRNOT00000006680 2 1 1 82 10 11158674 11158776 CAATGCCAGGTACAAGATGC 60 11158611 11158629 AGCTCTTGTTACAGGTGGG 59 NA Rattus norvegicus 81 S100b ENSRNOG00000001295 ENSRNOT00000001743 2 1 1 80 20 13135385 13135404 AAGCACAAGCTGAAGAAGTC 59 13131847 13135344 CTGCTCTTTGATTTCCTCCAG 59 NA Rattus norvegicus 81 Ltc4s ENSRNOG00000003244 ENSRNOT00000004359 2 1 1 80 10 35738507 35738525 GCGAAGAACTTTCCACGTG 60 35738369 35738463 CAATTTACCTGGGCTCGGA 60 NA Rattus norvegicus 81 F8a1 ENSRNOG00000037327 ENSRNOT00000042490 2 1 1 60 1 147022474 147022492 TGTTATTGCAGTCCCTGGT 59 147022516 147022534 AGCTTCTTGATGCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.2 ENSRNOG00000046012 ENSRNOT00000074319 3 1 1 60 X 62959395 62959413 ATCACCACTACCATGGGTC 59 62959437 62959455 ACATGAGACGAGCCTTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 1 3 4 107 5 78369877 78369895 AGAGTTTGCCATGTTGTGG 59 78368993 78369806 ATGATAATGTCAGCACCGG 58 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 3 2 2 80 9 61023974 61023993 AATATTCGCTTTGCTCGAGG 59 61022376 61023932 ATAAGCCAAAGGAGCTTGTC 58 NA Rattus norvegicus 81 Hbp1 ENSRNOG00000008927 ENSRNOT00000012004 1 1 1 80 6 51233831 51236827 AGGGAAAGATAACAGAGCCA 59 51233770 51233791 GTATACATCCTCCTTTCCTCGT 59 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 1 1 1 81 12 13734618 13736158 CTGCAGAAGGACTACCAGG 60 13736203 13736221 TGTTCAGCTGCTGGATCTC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617,ENSRNOT00000043661 2 2 2 82 3 9422205 9427787 TGAAGACCCTGAAGGAGGA 60 9422141 9422160 GTTAGGGTGCTTGATCTCCT 59 NA Rattus norvegicus 81 Gngt2 ENSRNOG00000006108 ENSRNOT00000008011 3 1 1 81 10 83657973 83658344 GTGATCCGATTTCCAAGACAG 59 83658386 83658405 ATGCCTTTCAGAAGAGGGTC 60 NA Rattus norvegicus 81 Ezh2 ENSRNOG00000006048 ENSRNOT00000008149 1 1 1 80 4 77305246 77305264 TGATGATGGAGACGATCCT 58 77303431 77305205 GGGCAAGTTTCTTTATCATCTC 58 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 3 2 2 81 5 139816389 139816407 CCAGCTGGAGGTAGAAGTG 60 139816451 139816730 CTTGATATAGGTGGCTGGGA 59 NA Rattus norvegicus 81 Rn60_5_0815.8 ENSRNOG00000051112 ENSRNOT00000075881 1 1 1 80 5 77564305 77564686 AGCTTTACGAACAAAGGATCTG 59 77564246 77564264 TCCCTAGTGATTCCATGCG 59 NA Rattus norvegicus 81 Marc2 ENSRNOG00000037850 ENSRNOT00000029439 1 1 1 80 13 102744393 102745528 CCTTCAGAACTATGAGGTCG 58 102744332 102744352 GTGTTGAGATCCACTAAGGAG 58 NA Rattus norvegicus 81 Mir6326 ENSRNOG00000046282 ENSRNOT00000072421 1 1 1 60 10 62299379 62299397 TTGCCAAGAGTTGCTAGTG 58 62299421 62299439 TCCTAAATGCACTTGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rag2 ENSRNOG00000004623 ENSRNOT00000006097 2 1 1 73 3 91195187 91195208 GGAAGTAGACTTCATACCTCTC 57 91196808 91196826 CTGTAACCATCTGCAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266,ENSRNOT00000090275 2 2 2 81 20 9855410 9855428 TTCTGGATAACCCTGCTGC 60 9852932 9855365 ATTGGCTTGGAGATAGGCC 60 NA Rattus norvegicus 81 LOC102549291 ENSRNOG00000046638 ENSRNOT00000073416 2 1 1 80 X 100632484 100632504 TGGATCCTTCTCAGAAGAGTC 59 100632224 100632442 CCCAAACGTAGCCTATAGC 58 NA Rattus norvegicus 81 Rnaseh2b ENSRNOG00000009192 ENSRNOT00000012231 1 1 1 80 15 45439912 45441851 CAGTCAGTTCAATCAGGAGG 58 45441889 45441912 CTTTATGAGATAGTGAAGGAGCAG 59 NA Rattus norvegicus 81 Hacd3 ENSRNOG00000030232 ENSRNOT00000041915 2 1 1 81 8 70490022 70492655 TGCTGCATTTCAAAGCTCAG 60 70489960 70489980 TTCACGAGGTCTAAGAACTCC 59 NA Rattus norvegicus 81 Nov ENSRNOG00000008697 ENSRNOT00000011904 1 1 1 80 7 94378432 94381506 GAAGCAACAGACATGAAAGG 57 94381547 94381567 GCAATTCTTGAACTGTAGGTG 58 NA Rattus norvegicus 81 Trim9 ENSRNOG00000007031 ENSRNOT00000009560 1 1 1 80 6 92666480 92666499 CTTGGGCAATGTATGTGGAC 59 92663922 92666438 TGATCCCTCCTTCAGTTCTG 59 NA Rattus norvegicus 81 Olr29 ENSRNOG00000056144 ENSRNOT00000081156 3 1 1 60 1 150210023 150210041 TATTGCCATCTGCTCTCCT 58 150209981 150210002 CAGTACACAGTTACCACTACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc6 ENSRNOG00000028781 ENSRNOT00000042115 2 1 1 80 1 101997438 101997459 TACATGTACAGAGTCAAGGTCC 59 101995829 101997397 CAGGACCAGGACCTTTCTG 60 NA Rattus norvegicus 81 Abcc6 ENSRNOG00000028781 ENSRNOT00000042115 3 1 1 80 1 101979312 101979330 TTCTGCATAGGAACGGAGC 60 101976906 101979269 CATGTGCTTCTCCTTCTCCT 60 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000039278 ENSRNOT00000088375 1 1 1 60 5 61123936 61123955 GGTTCAGACTTTGCTTCAGG 59 61123895 61123913 GGCCTGGTAAGTGTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837,ENSRNOT00000064477 2 2 2 80 17 10497040 10497058 CTCATCAACCAGTTGACGT 58 10493568 10496999 GTTCCTTTCTTCCCTTTCTAGG 59 NA Rattus norvegicus 81 Slc13a1 ENSRNOG00000008121 ENSRNOT00000010788 2 1 1 80 4 51170771 51185511 TCATGTCTTCTACACATGTAGC 58 51170712 51170732 ATGTTGCTAAGCAGATGACTC 59 NA Rattus norvegicus 81 Mmp1 ENSRNOG00000032353 ENSRNOT00000012595 1 1 1 80 8 5704360 5704381 GACACCACTAACATTCGAAAGG 60 5704420 5704644 TTGTCACTATGGTCTCCTCTG 59 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613,ENSRNOT00000079263 1 2 2 80 13 91844277 91844295 GGCTTTCATCGTCTTCCTG 59 91843469 91844234 GTCAGGTACGTTCCTTTGTG 59 NA Rattus norvegicus 81 Best2 ENSRNOG00000003737 ENSRNOT00000067600 1 1 1 80 19 26126960 26126980 GATCCTTCGTTCTGTTAGCAC 59 26126822 26126918 CGGGTCATAAATCCAGCCT 60 NA Rattus norvegicus 81 Ccdc122 ENSRNOG00000042404 ENSRNOT00000030097 1 1 1 80 15 59234091 59234109 GCAAAGCAACAGCTATCAC 58 59234152 59249783 ATCATGAAGTTCCATCTGCA 57 NA Rattus norvegicus 81 Samd5 ENSRNOG00000023549 ENSRNOT00000034744 1 1 1 62 1 3762661 3762679 CATTCACCTGAGCAAACCC 59 3715464 3715482 AAGTACTCTAGGATGCCGG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp385d ENSRNOG00000014661 ENSRNOT00000038449 1 1 1 80 15 6287005 6349817 GAGATTTAATTCAGATAGCCAGGC 60 6286948 6286968 ATGGATTCCAATGCTTTGAGC 60 NA Rattus norvegicus 81 Isy1 ENSRNOG00000010021 ENSRNOT00000013571 3 1 1 81 4 119729759 119736773 ATTCAGAATGCTGGTTTAGGG 58 119729698 119729716 AGTGTCCTTTCTCCCTCAG 58 NA Rattus norvegicus 81 RGD1563483 ENSRNOG00000050184 ENSRNOT00000034101 2 1 1 80 15 52782988 52783010 CATTGATGAAGACACCTAACCTG 60 52783048 52783536 TGTTGGTGAAACTTGTCAGTC 59 NA Rattus norvegicus 81 Gsdmd ENSRNOG00000007728 ENSRNOT00000075917 1 1 1 80 7 116893368 116893386 CGACTCTGGAGAACTGGTG 60 116893430 116893537 TGGGTTTCACTCAACCCAG 60 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025314 3 1 2 80 2 187345924 187347614 CTACATACAGGACTCTGCTGG 60 187347656 187347674 GAAAGCCAAGAGAAGCCTG 59 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025384 3 1 2 90 2 187349018 187349036 AGGGCCAGATACTTGAGAG 58 187349090 187349372 AGAGATCTACCTGCCTCCT 59 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000073875 3 1 2 80 2 241317863 241322888 TTACCTCACAAGGGAAAGTG 58 241317802 241317820 TTGTCTCTTGTCTTGCACC 58 NA Rattus norvegicus 81 Rptor ENSRNOG00000003821 ENSRNOT00000005337 1 1 1 80 10 109044039 109047178 TCATCCAGAAGGGCATCAC 60 109047221 109047240 GGAATTTGACCACAGAGGGA 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 2 4 4 80 3 3178966 3178986 GGTCATTGTCATTTGAGACGA 59 3179027 3179647 GGTCTTCTTGCCTTTGAAGG 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123,ENSRNOT00000078991,ENSRNOT00000012622 2 3 3 80 4 99800061 99800186 CCTGATACCTTCAGTATTTCTTCC 59 99800004 99800024 TCTAACCTATTGGCCACATCC 60 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 2 4 4 90 12 19760519 19760537 TCTTCAGGAAGGGAAAGCC 59 19754104 19760470 CTGATCAATATACTTGCCTGTTCC 60 NA Rattus norvegicus 81 AABR07008940.1 ENSRNOG00000011997 ENSRNOT00000015975 1 1 1 80 2 80270086 80270773 GAACATTTCAACCTGTTCAAGG 59 80270814 80270832 TCAAATGACCCTGAACAGC 58 NA Rattus norvegicus 81 Slc27a4 ENSRNOG00000014369 ENSRNOT00000019500 2 1 1 80 3 8370396 8370417 GCTCTTCTATATCTACACGTCG 58 8370458 8370579 GCCATTCGGTAATACCTGC 59 NA Rattus norvegicus 81 AC095985.1 ENSRNOG00000053226 ENSRNOT00000091121 3 1 1 81 10 44421445 44421463 CACTGGTCCACCTCATCAG 60 44421381 44421405 GAGATGTACATCATGTCGATACTG 59 NA Rattus norvegicus 81 Gan ENSRNOG00000012671 ENSRNOT00000016963 1 1 1 80 19 49733628 49733646 AAGTCGAGAGGACATCCAG 59 49733687 49740762 TAGATCCACCTCTTAAACTCGT 59 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000064562 1 1 2 82 9 71777991 71778009 CTACCCTGACTACCAGCAG 59 71764641 71777945 TTCTGTGAGAGCTGGAGTG 59 NA Rattus norvegicus 81 Kpna3 ENSRNOG00000014945 ENSRNOT00000034400 1 1 1 80 15 41714165 41714535 AACATTATAGGTGATGGTCCTC 58 41714106 41714126 ATTGATGAAGGACAGAAGAGG 58 NA Rattus norvegicus 81 Slc5a5 ENSRNOG00000018822 ENSRNOT00000025576 1 1 1 80 16 20298834 20298949 CTCATCCTGAACCAAGTGAC 58 20298992 20299010 GGTAGTGTACAAGGTGCAG 58 NA Rattus norvegicus 81 Ncr2 ENSRNOG00000042230 ENSRNOT00000065673 2 1 1 81 9 14649300 14649318 GTTAGCGCTTGGACTTGTC 59 14648091 14649257 ACATTTATTCCCGACGTTCTG 59 NA Rattus norvegicus 81 Rn60_X_0651.4 ENSRNOG00000051331 ENSRNOT00000076119 1 1 1 77 X 64157874 64157896 CCAGAAGATGATCATAGGAACAG 59 64157933 64157951 TAGCAGACATTCAAGCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0651.4 ENSRNOG00000051331 ENSRNOT00000076119 2 1 1 78 X 64157874 64157896 CCAGAAGATGATCATAGGAACAG 59 64157933 64157952 TTAGCAGACATTCAAGCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560580 ENSRNOG00000029974 ENSRNOT00000048690 2 1 1 60 12 34651972 34651990 ATTCCAGAGACTCCTCCAG 58 34652011 34652032 GACCTGTTAAGATGTTGCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016939.1 ENSRNOG00000040007 ENSRNOT00000046644 2 1 1 88 15 5323880 5323900 CAGTGGAACAGTCCATTAAGG 59 5323950 5324130 AATTTCTTGCCTGAGGCAG 58 NA Rattus norvegicus 81 Psmb10 ENSRNOG00000019494 ENSRNOT00000026462 2 1 1 94 19 37911478 37911582 CTTGTGTTCCGTGATGGAG 59 37911402 37911422 ATAAAGTGGATCTTCTCGCAG 58 NA Rattus norvegicus 81 Psmb10 ENSRNOG00000019494 ENSRNOT00000026462 3 1 1 94 19 37911476 37911580 TGTGTTCCGTGATGGAGTC 60 37911400 37911420 CGATAAAGTGGATCTTCTCGC 59 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 2 2 2 81 3 177040812 177041755 AAAGTCCTATCGGAAGCTGG 60 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522,ENSRNOT00000010421 1 2 2 80 5 39621416 39622531 GCAGAACACTTAATAAAGCCTC 58 39621357 39621375 AGAAGCAGATGTTGACGAC 58 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 2 2 2 81 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109743 143109997 CTTTATCTCCTCACACTTGGT 58 NA Rattus norvegicus 81 Rarb ENSRNOG00000024061 ENSRNOT00000033048 1 1 1 80 15 10185763 10185781 CACTAGGAATCGATGCCAG 58 10185824 10246744 CTGTCATTCCTGACAGACTC 58 NA Rattus norvegicus 81 Zdhhc18 ENSRNOG00000058156 ENSRNOT00000081470 1 1 1 80 5 151837879 151837899 GCTTCACCTGTAAGATGTTCC 59 151836410 151837837 GATGGTCAAACCGTTCCAC 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 3 2 2 80 1 197913603 197913758 ATCAATGGAGGTCCTTCCC 59 197913541 197913562 ATTGTTGGGTGAAGATAAGGTC 59 NA Rattus norvegicus 81 Bambi ENSRNOG00000016066 ENSRNOT00000021801 3 1 1 80 17 56906360 56906380 AAGACATGTGCAATTACCGAG 59 56905868 56906320 GGTATCTGTTTCCTTGTCCTG 59 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000047131 ENSRNOT00000071042 2 1 1 84 16 4998026 4998044 TGAAACTCTGGCTGGAGAG 59 5002669 5002687 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbl1 ENSRNOG00000006921 ENSRNOT00000064824 3 1 1 80 3 153294041 153294860 CCTTCCTGTGAAGAAGTTATATTCC 59 153293985 153294003 CATCATGGGAAGATGGCCT 60 NA Rattus norvegicus 81 Hapln2 ENSRNOG00000018870 ENSRNOT00000025624 2 1 1 133 2 187398443 187401296 TCTTGCAGTACTAAGGCGT 59 187398328 187398347 TTTGTGAAAGACGGTGAAGG 59 NA InUTR Rattus norvegicus 81 AABR07016992.1 ENSRNOG00000047272 ENSRNOT00000043553 3 1 1 89 15 5774225 5774700 AAATGACTGGTACTGCCAC 58 5774753 5774771 CTGTTCTCATTCCGTGCTC 59 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 3 2 2 81 19 52080993 52081862 GTAGTTATCATTGGCAATGGTC 58 52081904 52081922 CTCCTGGTTTCACATAGGG 57 NA Rattus norvegicus 81 Plscr5 ENSRNOG00000047917 ENSRNOT00000073400 2 1 1 80 8 99574381 99574400 AGGTGATTACAGTGAACAGG 57 99574443 99575406 GGGCTTGGATTTCTAGCTC 58 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334,ENSRNOT00000033633 2 2 2 80 1 75466311 75466330 CCATAGATCAGGATGACCCT 58 75466373 75466766 CAAACTCACCTGTCTCAGG 58 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 3 2 2 82 1 88558195 88558297 CACCAGCGAATTCATGTAAGAG 60 88558134 88558155 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000016220 1 1 2 80 3 149240734 149240752 GGATGGTGCGAAAGAATCC 59 149240794 149245756 GCTTCAATACTTTGACCTGCT 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 3 5 8 83 20 1983428 1984093 AGGTTGCCAGATTATACATCC 58 1983365 1983383 AAGTTGATGGCCTTCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Phospho1 ENSRNOG00000005569 ENSRNOT00000007352 1 1 1 179 10 83640473 83642199 TGTCTAGGGTCTTGGATGTG 59 83642341 83642359 GAAGTCGAAGGTCAGGAGG 60 NA InUTR Rattus norvegicus 81 Olr34 ENSRNOG00000030554 ENSRNOT00000042081 1 1 1 60 1 150311055 150311076 TGTCTGTGTTTCTTAGTTCTGG 58 150311095 150311115 ATTTCTGAGGTTGATGGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047606.1 ENSRNOG00000032999 ENSRNOT00000046713 1 1 1 80 5 39689178 39689250 AAGAGTCCAGTGAGACTGC 59 39689116 39689137 TCTCTAAATCTCCAGAGGTGTG 59 NA Rattus norvegicus 81 Uba2-ps1 ENSRNOG00000052785 ENSRNOT00000091820 2 1 1 90 13 93884315 93884337 GACGACTTCCTGGACTACAC 60 93884390 93884408 GGGTGTCACCAACTACCTC 60 NA Rattus norvegicus 81 Ppif ENSRNOG00000010558 ENSRNOT00000014382 2 1 1 84 16 1979403 1980528 GTGCTGGAGTTAAAGGCAG 59 1981054 1981072 TGTAGCCAAAGCCCTTCTC 60 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 3 2 2 105 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879521 142879539 ATCATGTTCATCCACGCCA 60 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527,ENSRNOT00000085042 3 2 2 82 3 8910776 8910794 ACCTACTATGCACAGTGCT 58 8910315 8910452 GTGCCTGGAAATATGGCAC 59 NA Rattus norvegicus 81 Ckap4 ENSRNOG00000008016 ENSRNOT00000010601 2 1 1 81 7 24939667 24945236 AGCAGAAGGTACAGTCTCTG 59 24945278 24945298 GTGAGATCCTGTTTATGCTGG 59 NA InUTR Rattus norvegicus 81 Ropn1 ENSRNOG00000002187 ENSRNOT00000002975 3 1 1 85 11 69328869 69328888 TATATCGCTGAAGTGGATGG 57 69326969 69328822 TCAGGACCAATTACTTCCTG 57 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000031807 2 1 2 82 15 5296731 5296749 GAGATGGGACCACATGACC 60 5296795 5297167 ACCCATCAAGTTCCAGAGG 59 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000031807 3 1 2 82 15 5296730 5296748 AGAGATGGGACCACATGAC 59 5296794 5297166 CCCATCAAGTTCCAGAGGA 59 NA Rattus norvegicus 81 Mfsd3 ENSRNOG00000015685 ENSRNOT00000021208 1 1 1 80 7 117765324 117765412 CACAGTCATGAGAGGAGCA 59 117765455 117765474 GTGAATGTGGCAGTAGTGAC 59 NA Rattus norvegicus 81 Mfsd3 ENSRNOG00000015685 ENSRNOT00000021208 2 1 1 81 7 117765325 117765413 ACAGTCATGAGAGGAGCAG 59 117765457 117765476 CAGTGAATGTGGCAGTAGTG 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857,ENSRNOT00000065893 3 3 3 166 12 52367152 52376637 AAGAGCATGAGCGAAACCT 60 52376767 52376785 GTTCTCCTTGACCCGAGTC 60 NA Rattus norvegicus 81 Tfrc ENSRNOG00000001766 ENSRNOT00000002407 2 1 1 80 11 71411111 71411131 TCAGGTAGTAACATTGACCCA 59 71410093 71411072 CAGTTTACCAGTAACTTCTCCA 58 NA Rattus norvegicus 81 AABR07051244.1 ENSRNOG00000047422 ENSRNOT00000074437 2 1 1 81 3 2992946 2993479 CCAGGATGATTTCTCTGGGA 59 2992884 2992902 TCTCTTTGGGTTGTTCCCA 59 NA Rattus norvegicus 81 Smim1 ENSRNOG00000043193 ENSRNOT00000063779 3 1 1 87 5 171309497 171309764 CTATAAGAGGATCTCCCAGAAGC 60 171309432 171309450 GATGATCCAGAAGAGGGCC 60 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 2 1 1 139 11 65759136 65759154 CCAGGTACTCAACCTCAGC 60 65751684 65759035 CTAAACTCTGCAAGTTCTCGA 58 NA DesignNoJunction Rattus norvegicus 81 Lcn9 ENSRNOG00000027821 ENSRNOT00000044284 2 1 1 81 3 3273104 3273482 TCTCCATTGCCTATGAGGG 59 3273527 3273545 TTCTGCATGTGGAAGATGG 58 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 1 2 2 202 2 84436729 84436747 GATTCCTTCTACCCTCCGG 59 84394086 84436563 ATAATAAGGCCAGTCCGGC 60 NA DesignRelaxed Rattus norvegicus 81 Lcn10 ENSRNOG00000028074 ENSRNOT00000028997 1 1 1 80 3 2897115 2897133 TCTGCGAGAATTCCTGGAC 60 2897177 2897670 GCACAGGAATCGTCTTTCG 59 NA Rattus norvegicus 81 Rn60_12_0174.1 ENSRNOG00000024342 ENSRNOT00000030304 1 1 1 60 12 15347225 15347246 ATGTTCCAGTATGACTCTACCC 59 15347186 15347204 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000090532 1 1 4 80 14 85881931 85883264 GATGAGCTTCCCAAATACTCTG 59 85883301 85883323 CCTAAACGAGGCAGATATAAGAC 59 NA Rattus norvegicus 81 Bag3 ENSRNOG00000020298 ENSRNOT00000027616 2 1 1 80 1 199958351 199958372 GACAGATAAACAGTGTGGACAG 59 199958413 199959923 GACTGAGATCGCTCAGGTC 60 NA Rattus norvegicus 81 Hand1 ENSRNOG00000002582 ENSRNOT00000003486 2 1 1 167 10 43252636 43252654 TACTTGATGGACGTGCTGG 60 43250992 43251012 TTTAATCCTCTTCTCGCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 1 2 2 80 7 143402868 143404913 TGTACCAGACCAAGTTCCA 58 143402806 143402824 AGATCTCGTTCCTGGTGTG 59 NA Rattus norvegicus 81 Nfkb1 ENSRNOG00000023258 ENSRNOT00000036838 3 1 1 80 2 240794889 240794907 GGATTTCCTGCTTACGGTG 59 240793493 240794845 GTTTATGGTGCCATGGGTG 59 NA Rattus norvegicus 81 Acsbg2 ENSRNOG00000045947 ENSRNOT00000074555 1 1 1 80 9 10190333 10190354 GTGCTGTCATCATCTATACCTC 58 10190395 10192953 CCGTCCATGTGATGTTGTC 59 NA Rattus norvegicus 81 Mlf1 ENSRNOG00000012827 ENSRNOT00000017151 1 1 1 80 2 164570761 164572457 TACAAAGAAACTTTGGCCAGC 60 164572494 164572517 CTTTGGAATAGGTCATAACAGAGG 59 NA Rattus norvegicus 81 Mlf1 ENSRNOG00000012827 ENSRNOT00000017151 3 1 1 81 2 164570757 164572454 GAGTTACAAAGAAACTTTGGCC 59 164572493 164572514 TGGAATAGGTCATAACAGAGGA 58 NA Rattus norvegicus 81 LOC100362965 ENSRNOG00000022595 ENSRNOT00000034599 2 1 1 60 17 61332238 61332257 TCAGCAACAGCAAATTCCTG 60 61332197 61332215 AGCTAAGAACGCCTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rraga ENSRNOG00000007051 ENSRNOT00000009225 2 1 1 60 5 104941896 104941915 ATGAAGTTCTGCTGTTCGAG 58 104941938 104941956 TCTTTGCACTGGTAGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsi ENSRNOG00000026060 ENSRNOT00000030966 2 1 1 127 18 56180282 56180302 ATGGCTCAGATATTGAGACCC 60 56180391 56184667 GATCTGGTACCTGCCAGTG 60 NA Rattus norvegicus 81 Lhfp ENSRNOG00000014153 ENSRNOT00000019057 1 1 1 107 2 142429879 142460809 TTTGACTTGGGCAAGTGTG 59 142460880 142460898 CTTCTTGCCTGAGAAGCAC 59 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073,ENSRNOT00000071713 2 2 2 87 4 480761 482513 AGACCTTTGAAATTCGCGT 58 480692 480710 CTAGATGGTGTGCCTCCTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC102555170 ENSRNOG00000046069 ENSRNOT00000071914 2 1 1 81 7 142011523 142011542 GATGTCCCTCCATCTCATCC 60 142011585 142020654 AGAGTAGAGGACACCCAGAG 60 NA Rattus norvegicus 81 Dnajc12 ENSRNOG00000051960 ENSRNOT00000082430 3 1 1 81 20 26893183 26893201 ATACTGAACTACAGGCCGG 59 26893246 26902526 GAATTTGCTCAACCGAGGA 58 NA Rattus norvegicus 81 Prrx2 ENSRNOG00000058329 ENSRNOT00000083251 1 1 1 93 3 9715316 9716215 GTGTCCAAGTCTGGTTCCA 60 9716272 9716290 TAAGACTTGAGCAGCGAGG 60 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193,ENSRNOT00000065584 3 2 2 80 10 37052818 37052838 TTTAAAGAGGAAGACCCTGTG 58 37051183 37052777 AACCTTGATTTCACACTTGC 57 NA Rattus norvegicus 81 RGD1565512 ENSRNOG00000027392 ENSRNOT00000036178 3 1 1 81 3 3732873 3732891 GATCTCCAATGCGGAAGTG 59 3729459 3732829 CATAGACAGAAGCTGTCTGG 58 NA Rattus norvegicus 81 Srpx2 ENSRNOG00000003715 ENSRNOT00000005020 3 1 1 80 X 104751497 104751790 CCTGTATGTGTAGACATAGATCC 58 104751829 104751848 AGTTAGTTTCTCTGGCTCTG 57 NA Rattus norvegicus 81 LOC691352 ENSRNOG00000038422 ENSRNOT00000058517 2 1 1 80 10 44241034 44241053 ATGCAGCACAATAACTACCC 58 44239028 44240994 TTAGAAGATTGATCTGTACCGG 58 NA Rattus norvegicus 81 LOC679823 ENSRNOG00000028883 ENSRNOT00000052265 3 1 1 60 10 10876197 10876215 ATCCCACTTCTGCAGTCAC 60 10876238 10876257 TGGTCCTTCAGTTCCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccer2 ENSRNOG00000046971 ENSRNOT00000075601 1 1 1 84 1 86938607 86938625 CTAGCAGAGGTGGTGATGG 60 86938670 86938996 CGAATATCTCTTTGTGGAGCAG 59 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000046867 ENSRNOT00000074301 2 1 1 60 1 88452338 88452358 CGAAAGCCTCTTCACTTACTC 59 88452377 88452398 CACTTATATGATTCCCTCCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561671 ENSRNOG00000028997 ENSRNOT00000046385 3 1 1 82 17 11915809 11915833 CAAACTACTACAAGTACAAGTACCC 59 11915551 11915772 GATCAGCTTCTTGTACTCTTCC 59 NA Rattus norvegicus 81 AABR07040622.1 ENSRNOG00000003194 ENSRNOT00000004262 1 1 1 89 X 106518956 106518974 TATGGCATTAGCCCACAGG 60 106519025 106519046 CACAAAGGTCTCTTCTGTGAG 59 NA Rattus norvegicus 81 Vom1r70 ENSRNOG00000047591 ENSRNOT00000075356 3 1 1 60 1 103064553 103064571 CTATCTCTGTCACCTGCCT 58 103064593 103064613 GAGGTACTGGGACTGATAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cln5 ENSRNOG00000055439 ENSRNOT00000077597 3 1 1 81 2 66607375 66607401 GTATTGGTTTCTACCTATGAAACCC 60 66601161 66601182 AAATATCGTATGTCGGGTAGGT 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489,ENSRNOT00000077952 3 2 2 80 1 81242098 81242117 GAAGCTGGAGTTCAACAAGG 59 81242159 81242608 GACTCCTTCATCTCTTTGGC 58 NA Rattus norvegicus 81 Lcat ENSRNOG00000019573 ENSRNOT00000026585 3 1 1 98 19 37915658 37915756 GATTGATAACACCAGGGTTGTC 59 37915581 37915599 GAGTAGGTCTTGCCAAAGC 59 NA Rattus norvegicus 81 Rtp2 ENSRNOG00000022160 ENSRNOT00000036777 1 1 1 80 11 80328485 80328505 AATCTCAAACCCAATGAGCTG 59 80328547 80331098 CCAAGAACAGTGGAACCTG 58 NA Rattus norvegicus 81 Gatad2a ENSRNOG00000022173 ENSRNOT00000027943 1 1 1 80 16 21263117 21263792 GCTGAAGCAGGTCATAAAGC 60 21263835 21263853 AGTACGGACCCGTTATTCC 59 NA Rattus norvegicus 81 Bag1 ENSRNOG00000008277 ENSRNOT00000011455 2 1 1 82 5 57254680 57254986 AGGTTCAGGTGTTCCTAGC 59 57254616 57254635 CAAGTTTGTAGACTGCAGCC 60 NA Rattus norvegicus 81 Rhobtb2 ENSRNOG00000017373 ENSRNOT00000023876 3 1 1 80 15 51474129 51474149 GGATGATATGAAGCTCATCGT 58 51468814 51474087 GTCACTGTGTACTGCTCTG 58 NA Rattus norvegicus 81 Lcn8 ENSRNOG00000017161 ENSRNOT00000023062 2 1 1 80 3 2874047 2874146 TGCTCAAGTACTTCACTCGG 60 2874188 2874207 CTTGGTCTGCTGTCATTTCC 59 NA Rattus norvegicus 81 Zfp358 ENSRNOG00000000974 ENSRNOT00000001289 2 1 1 239 12 2046499 2046517 GAACTACAAGTCCCAGCAG 58 2048783 2048801 CATCCTGGAAGTAGAACCG 57 NA DesignNoJunction Rattus norvegicus 81 Slc17a8 ENSRNOG00000007581 ENSRNOT00000010207 3 1 1 80 7 30233129 30233149 ATATCCAATGAAGAACGGACC 58 30232366 30233088 TGTGTTGAATTTGCTCAGAC 57 NA Rattus norvegicus 81 AABR07017140.1 ENSRNOG00000027633 ENSRNOT00000029140 3 1 1 80 15 12599596 12599615 TGTGAAGGAACTTCCATCTC 57 12589034 12599555 TCAAGCTGTATAGTTGCAGTC 58 NA Rattus norvegicus 81 Ergic1 ENSRNOG00000003508 ENSRNOT00000005273 3 1 1 80 10 16862237 16867090 CAACATATACTGGTGCCATTATCTC 60 16862181 16862200 TGAATCCAGTGAGCTCTGAC 60 NA Rattus norvegicus 81 LOC100361746 ENSRNOG00000028116 ENSRNOT00000038955 1 1 1 80 10 71488999 71489631 GGATTTGGTAATAAGAGTTCCTCC 59 71488942 71488962 GTAGCTATCGTCTGATTTCGG 59 NA Rattus norvegicus 81 Sh3bp5l ENSRNOG00000054400 ENSRNOT00000086218 1 1 1 92 10 43769794 43775679 CTAGGATACAGGAGGAGCTG 59 43775877 43775895 GATAGGTAGTCCTGGCCTC 58 NA Rattus norvegicus 81 Esrp2 ENSRNOG00000023177 ENSRNOT00000026873 3 1 1 81 19 38118211 38118229 GAGAATTCCATGTGCAGCA 59 38117846 38118166 TCTAGTCCCAAGTCCTGTG 58 NA Rattus norvegicus 81 C1d ENSRNOG00000005982 ENSRNOT00000089875 1 1 1 105 14 100421375 100422189 GTTGTTGCAGAAGTTGGAC 58 100422554 100422573 ATTAACTCCTTGAGTTGCCA 57 NA Rattus norvegicus 81 Tp53i13 ENSRNOG00000022615 ENSRNOT00000010691 3 1 1 98 10 62650825 62650843 GTCTCCTGAGTCTTCACGA 59 62651098 62651326 TTGGTAACACCTGTGGAGG 59 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 1 3 3 80 16 20114286 20114305 TGGATGGTGAGACACATGAC 60 20114348 20114815 CCAGAAAGGACTCCATGCA 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000014863 3 1 2 73 10 85287176 85287196 CAAGGAGAGGTCCACTGAG 59 85287121 85287139 CCTTGAGATGTCAGGGTGG 60 NA DesignRelaxed Rattus norvegicus 81 Mir3074 ENSRNOG00000035568 ENSRNOT00000053691 1 1 1 60 17 824016 824034 TCCTGTTCCTGCTGAACTG 60 823974 823994 TGCCTACTGAGCTGATATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1qc ENSRNOG00000012804 ENSRNOT00000017065 3 1 1 172 5 155258048 155258340 CCTACATGCTCAGGATGGT 59 155257894 155257912 AAGTCCATCATGCCCATCC 60 NA InUTR Rattus norvegicus 81 Mocs1 ENSRNOG00000011784 ENSRNOT00000067626 2 1 1 85 9 13500190 13500209 TCATCACGTCCATGTCAGAG 60 13497636 13500142 GAAGAGGCAGACCTTGAGG 60 NA Rattus norvegicus 81 Paqr3 ENSRNOG00000002035 ENSRNOT00000032130 2 1 1 80 14 14118773 14120862 TTGTACAGGACTTCGCTCC 59 14120903 14120924 GGACTTTGGAGATGTAGAACAG 59 NA Rattus norvegicus 81 Tyro3 ENSRNOG00000058586 ENSRNOT00000081462 3 1 1 80 3 111607928 111608340 GATGTTGGGCAAAGGAGAG 59 111608384 111608402 ACTGCCACTTTCACAAAGG 59 NA Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 1 1 1 66 5 103230302 103230320 CCTTCCATGTTCCTAACCC 58 103229330 103230272 TTTGGAAGTTTCTCCAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Tspan4 ENSRNOG00000029810 ENSRNOT00000049448 2 1 1 80 1 214470360 214471391 TACTGCTCACTTTCTTTGTGC 59 214471432 214471451 CACTGTAGGCAAAGAAGAGC 59 NA Rattus norvegicus 81 Mfng ENSRNOG00000008133 ENSRNOT00000011079 1 1 1 86 7 119980441 119980461 CAGCTATGGTGTCTTTGAAGG 59 119979743 119980393 GAGCGAAATCTGGAAGGGT 60 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 2 2 2 139 4 151513686 151513704 AGCACATGTCCTACATCGG 60 151508268 151513583 CTCTCGGCTACCTATCTGC 59 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 3 2 2 146 4 151513693 151513712 GTATCAGGAGCACATGTCCT 59 151508269 151513584 TCTCGGCTACCTATCTGCA 60 NA Rattus norvegicus 81 LOC499770 ENSRNOG00000025711 ENSRNOT00000030623 2 1 1 80 3 8746475 8746496 GATTGATAAGAAACTGGACCCT 58 8746322 8746435 TTGTACGTCTTGCATTCTGG 59 NA Rattus norvegicus 81 Ccdc77 ENSRNOG00000037206 ENSRNOT00000056200 3 1 1 80 4 152861783 152863656 ACGCTCTATAAGGCAACCA 59 152861721 152861739 TCTCCTGTTGCTATCACGG 59 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 1 2 2 80 10 94364718 94364738 CTCCAAACCAGAGATCATGAG 58 94364363 94364677 TCAAACCCTTTGCCTATGAC 58 NA Rattus norvegicus 81 LOC685171 ENSRNOG00000058543 ENSRNOT00000084484 2 1 1 60 4 45854587 45854605 CAGGTAGACATCAGTCCCT 58 45854627 45854647 ATCTTGATCGTAGGAAATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txn1 ENSRNOG00000012081 ENSRNOT00000016447 2 1 1 81 5 75057681 75057699 AGACAAGCTTGTGGTAGTG 57 75056755 75057637 ACAGAGGGAATGAAAGAAGG 57 NA Rattus norvegicus 81 Sftpc ENSRNOG00000011177 ENSRNOT00000015035 2 1 1 80 15 52212085 52212442 TTCAAGAACTTCCAGGCCA 59 52212023 52212041 AGAATCGGATCCAGCACTG 60 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 2 2 3 80 5 173257588 173257819 CATTCCATGGAGCATGTGTC 59 173257860 173257880 GACATCTCTGATTCGTCTTGG 59 NA Rattus norvegicus 81 Fezf2 ENSRNOG00000009206 ENSRNOT00000012452 3 1 1 60 15 12829141 12829159 TCTACTGACAGCAAACCCA 59 12829183 12829554 GAGCATTGAACACCTTGCC 60 NA DesignRelaxed Rattus norvegicus 81 LOC100911558 ENSRNOG00000045991 ENSRNOT00000075695 1 1 1 89 18 35069406 35071501 TTTAGCAGGTAACACTACAGC 58 35067870 35067889 ACAGGATCATAATCCCTGGG 59 NA Rattus norvegicus 81 Olr201 ENSRNOG00000017387 ENSRNOT00000023349 1 1 1 60 1 170174587 170174608 TCATTCTCCTCTTCTTCATACC 57 170174548 170174566 TTCTTGCCAAAGCGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2h5 ENSRNOG00000018007 ENSRNOT00000024211 2 1 1 86 1 46979564 46983605 TGCTTATAGAATGCGATCCC 58 46983651 46983672 CTTGAATGATGAACTTCTTCCC 58 NA Rattus norvegicus 81 LOC100359802 ENSRNOG00000038520 ENSRNOT00000058749 3 1 1 81 17 66667631 66667653 GAAAGTAAGTGAAGTGCAGAGTC 60 66665708 66667593 CAAAGCAGTTCTGTTGTTACCA 60 NA Rattus norvegicus 81 Olr526 ENSRNOG00000050654 ENSRNOT00000045439 1 1 1 60 3 74411837 74411860 CTCCAATGTATTTCTTCCTAACCC 59 74411877 74411897 ATGACAGTTGAGTAACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl45 ENSRNOG00000010540 ENSRNOT00000014752 2 1 1 80 10 85263114 85264521 CTAAACAACTCAGACCATGACC 59 85266599 85266617 GTACTTGAGCTCCCAGACC 60 NA Rattus norvegicus 81 Dpp9 ENSRNOG00000050748 ENSRNOT00000075386 2 1 1 80 9 10879311 10879877 ACAAGTGTTCAAGGTAGCCA 60 10879918 10879938 ATGTATCGTTCTGTGTACCCT 59 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000074740,ENSRNOT00000070907 3 3 3 81 4 183353987 183355034 AAGTTTGAGTGTTGAAGACCAG 59 183353927 183353947 TACCACTGCTTTCTCACTACC 60 NA Rattus norvegicus 81 Ndst1 ENSRNOG00000019014 ENSRNOT00000025881 1 1 1 80 18 55965783 55966431 TCCTCAATCCTATCAGCGT 58 55965721 55965739 GGTGCTTGAAGGTGTACAG 59 NA Rattus norvegicus 81 Gpr33 ENSRNOG00000038990 ENSRNOT00000009040 2 1 1 80 6 72805603 72805622 TTTCCACATTGATTCTGCCC 59 72805466 72805561 TGATAACGGTCAACATTCCG 58 NA Rattus norvegicus 81 Mapkbp1 ENSRNOG00000007018 ENSRNOT00000009430 2 1 1 80 3 111803176 111803195 AGCTACTTTGTTACTGCAGG 58 111803238 111803445 AGTGGCATTCACCTTTGAG 58 NA Rattus norvegicus 81 Fras1 ENSRNOG00000002053 ENSRNOT00000002814 3 1 1 80 14 14482106 14492234 GTGTTCACCGAGCATACTG 59 14482044 14482062 CCACAAATGTCTCCAGTCC 58 NA Rattus norvegicus 81 Otud4 ENSRNOG00000018477 ENSRNOT00000024924 2 1 1 80 19 31941848 31941866 CAAGCTGGGATTGTATCGG 58 31938241 31941804 GAGTGTAATACCTGCTCGG 57 NA Rattus norvegicus 81 LOC100360055 ENSRNOG00000050823 ENSRNOT00000031923 1 1 1 80 1 251363283 251363445 GGGATATGGTGTGATCTTTGC 59 251363223 251363242 CCGAAGTTTCTCATGGTGAC 59 NA Rattus norvegicus 81 Tmem86a ENSRNOG00000013663 ENSRNOT00000018688 2 1 1 137 1 103175367 103176034 GGATACTTTGAACATGGTCTCC 59 103176132 103176150 GTAGAGGAGGGCATAGCAC 59 NA Rattus norvegicus 81 Ndufaf4 ENSRNOG00000007506 ENSRNOT00000010073 1 1 1 80 5 39251529 39251810 GAGCACCTGAGTCAGTATCC 60 39251848 39251871 TACATCTCTTAGTAAGGACAGCAG 60 NA Rattus norvegicus 81 Yod1 ENSRNOG00000025704 ENSRNOT00000030476 1 1 1 94 13 47441494 47442318 ATCCAGTCAGGTGACATGC 60 47442374 47442394 CTGACATAACTAGGAGCACCA 59 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000045922 ENSRNOT00000071339 1 1 1 81 1 81579795 81581120 CTGCTCAGATATGCTGACC 58 81581165 81581183 TTTCCACTCAACTGCTGTC 58 NA Rattus norvegicus 81 LOC499565 ENSRNOG00000031320 ENSRNOT00000047881 1 1 1 80 2 87969482 87970264 TCAGCAAGACAAACAATCCT 58 87970305 87970325 GAATTCATCAGATTCGCAGAC 58 NA Rattus norvegicus 81 Ankrd16 ENSRNOG00000028168 ENSRNOT00000025011 3 1 1 81 17 70392015 70392035 CCCTTCATGGATGCAATTCAG 60 70391269 70391972 TAGCTGAAGAGCAAGCCTC 60 NA Rattus norvegicus 81 LOC100912540 ENSRNOG00000047474 ENSRNOT00000045173 2 1 1 60 3 74815137 74815161 GCAATGTCCTATGATAGATATGTGG 59 74815101 74815122 ACATGATGACCGTATAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562409 ENSRNOG00000029423 ENSRNOT00000047713 1 1 1 89 3 59166129 59166347 TTAAAGCCCTCTTCCAAGG 57 59166058 59166077 AAACAAAGGATTGACCACCT 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000079192,ENSRNOT00000084717,ENSRNOT00000044408,ENSRNOT00000019969,ENSRNOT00000087441 2 6 6 80 4 154712900 154712918 CATTGTCTCTGCTGCTTCC 59 154712959 154713244 AACTCAAGATATCACCCATCAC 58 NA Rattus norvegicus 81 Nanos1 ENSRNOG00000025060 ENSRNOT00000036203 1 1 1 258 1 282135104 282135122 TACTGGAACGACTACCTGG 58 282135344 282135362 CAAATGGGTTCAGCTCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il2ra ENSRNOG00000047647 ENSRNOT00000073144 1 1 1 80 17 70508416 70508437 GTGAAGAATCTCAAGGAAGCAG 59 70507663 70508377 GTTGTGAGAAGTCTGTGTTGG 60 NA Rattus norvegicus 81 RGD1561582 ENSRNOG00000021528 ENSRNOT00000036556 1 1 1 80 8 116320781 116320937 AATCTGATTCCTCAGGGCA 58 116320977 116320999 TCATACTTCATAGAGGATCACGG 59 NA Rattus norvegicus 81 Rps2-ps2 ENSRNOG00000060523 ENSRNOT00000084691 1 1 1 60 20 3134808 3134830 ATAGATGACTGCTACACTTCAGG 60 3134770 3134788 CCTTGGCAAAGTAGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561034 ENSRNOG00000030818 ENSRNOT00000040672 1 1 1 80 1 170213072 170214999 AAGGATAAGGTCATCGAGGAG 59 170215039 170215059 TAGATCATAGTAGGCTGCGTC 59 NA Rattus norvegicus 81 Rn60_13_0841.1 ENSRNOG00000026917 ENSRNOT00000036680 2 1 1 60 13 79204057 79204075 GCTACAGCTTTACCACCAC 59 79204096 79204117 CACAGCTTCTCCTTTATGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0841.1 ENSRNOG00000026917 ENSRNOT00000036680 3 1 1 60 13 79204248 79204266 CTCTTCCAGCCTTCCTTCC 60 79204290 79204308 AGTTGAAGGTGGTCTCGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561870 ENSRNOG00000042782 ENSRNOT00000067026 2 1 1 60 1 163814053 163814075 ATATCTTTAGAGACCCAGCTCTG 59 163814015 163814034 TCAAACTTAACCTTGGCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 2 2 2 121 5 160575353 160575371 TGCTATCCATCTGCCTGAG 59 160571605 160575268 CTCTTCCTGGCTGTCTTCC 60 NA Rattus norvegicus 81 Bcdin3d ENSRNOG00000058430 ENSRNOT00000091538 2 1 1 99 7 141136482 141136500 CTTCGACAGCTCTTCCCTC 60 141133060 141133081 GTTTATACAGAGCCATGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Bcdin3d ENSRNOG00000058430 ENSRNOT00000091538 3 1 1 100 7 141136485 141136503 CTTCTTCGACAGCTCTTCC 58 141133062 141133081 TTATACAGAGCCATGCTCAG 57 NA DesignNoJunction Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000034583 3 1 2 83 13 79081206 79084172 GGAGCAAGGACATCAATGC 59 79081141 79081159 GGTCCCTGTCCTTATCGTC 59 NA Rattus norvegicus 81 Cngb3 ENSRNOG00000006084 ENSRNOT00000008087 2 1 1 80 5 33342999 33343020 AGAGTACCTGTGAAAGAGTACC 59 33343058 33344226 CAGGAGATAAATCCGATCTGTG 59 NA Rattus norvegicus 81 LOC103690317 ENSRNOG00000060185 ENSRNOT00000086886 2 1 1 80 7 140202696 140204481 ACTGCCTTACCCATATCTGTC 59 140202636 140202656 TGTTACAGGGTACCTCTTCAG 59 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303,ENSRNOT00000075569 2 2 2 93 2 195678741 195678760 CACCATACGCCTATTACCTC 58 195678405 195678687 TCCTTGTAAGTGATGCTTCTG 58 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 3 2 2 119 7 75578736 75579367 CAAGAAAGGAATTGTGGACC 57 75578636 75578654 AACACAGAGAAGTTGAGGG 57 NA Rattus norvegicus 81 Armc4 ENSRNOG00000018905 ENSRNOT00000025585 1 1 1 80 17 60349618 60349638 CAAGCACTTCTTGTGAATGTC 58 60349679 60385737 TAAGCGATCAATTATCGCCA 58 NA Rattus norvegicus 81 Ccni ENSRNOG00000002125 ENSRNOT00000002924 1 1 1 80 14 16345482 16345500 TGTTGGAAAGGGCAATCTC 58 16345541 16356466 GAGAAACATTCTGGTTTGTAGG 57 NA Rattus norvegicus 81 MGC94891 ENSRNOG00000011243 ENSRNOT00000015010 2 1 1 80 1 52330838 52332848 GGAAAGACAGATTCTGTGGG 58 52330777 52330797 TTTCCAAGCATTTCAGAGTCG 59 NA Rattus norvegicus 81 RGD1310769 ENSRNOG00000008781 ENSRNOT00000012327 2 1 1 80 6 109684160 109684181 CTCGGAGTTGTTTGTATTTGGA 59 109683995 109684122 AGGATTGAGAAACTTGCTACCA 60 NA Rattus norvegicus 81 Dennd6a ENSRNOG00000011636 ENSRNOT00000016233 2 1 1 80 16 2289450 2289469 TCAGCATTGCAAACTCACTG 60 2289605 2297916 CCTAGACAACCTGAATTTGAGTC 59 NA Rattus norvegicus 81 Ccdc121 ENSRNOG00000022717 ENSRNOT00000036629 1 1 1 60 13 99820871 99820891 GAAACGGGTAAAGAGGAAGAC 59 99820831 99820849 TTCTTGGATTTGCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Miip ENSRNOG00000024139 ENSRNOT00000035695 2 1 1 80 5 164677365 164677642 CAGCATCAGAGTCAAACCTG 59 164677304 164677323 AGGAAGCAGAAGTCTCTTGG 60 NA Rattus norvegicus 81 Olr613 ENSRNOG00000045685 ENSRNOT00000047702 1 1 1 60 3 76345343 76345361 CTCTTGTGATTCCCATGCT 58 76345301 76345320 TGTTTCACATCCTTGTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wsb2 ENSRNOG00000001135 ENSRNOT00000001499 2 1 1 80 12 44944292 44944312 GTTACAGCTTCGTATGACACC 59 44943743 44944252 CTGAGTGTGATGAAGTGACCT 60 NA Rattus norvegicus 81 Sync ENSRNOG00000008118 ENSRNOT00000010730 3 1 1 90 5 147483419 147495536 TTCTACAGTACAGGGAGCAG 59 147495589 147495607 TCCTTGTTCTTCTGCTGCT 59 NA Rattus norvegicus 81 Hlx ENSRNOG00000002309 ENSRNOT00000003155 1 1 1 89 13 102642524 102642545 CCTCAAATTTGGTATTGACCGA 59 102641756 102642474 AGCAGCGATGTGAGATCTC 60 NA Rattus norvegicus 81 Chst8 ENSRNOG00000022919 ENSRNOT00000037700 2 1 1 84 1 90616323 90616341 GGACCCTATAGAGCTCAGC 59 90543564 90543989 CAAGTGGCTATCATGCTGG 59 NA Rattus norvegicus 81 LOC102550160 ENSRNOG00000037285 ENSRNOT00000056386 3 1 1 93 8 115273849 115274022 TGGGCTGTCTGTATAGTAAGG 59 115273776 115273794 TCTTGCTGTCGTGATTCTG 58 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181,ENSRNOT00000090680 3 2 2 80 3 112713566 112713587 AGAATTCAGCACCTTTCTTGAC 59 112701732 112713526 AACACGGATGTTAGAAGCTG 58 NA Rattus norvegicus 81 RGD1310371 ENSRNOG00000012301 ENSRNOT00000016433 1 1 1 85 1 145930092 145930110 ATACCATGTGGTGTGACTG 57 145929042 145930045 CAGCTGTTAGCATTGTTACTC 57 NA Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000044726,ENSRNOT00000085175 3 2 2 80 14 92036982 92037000 TCTTTCCGGATCAGATGGT 58 92036592 92036939 TGGAGTTCAGGAAATTCTGC 58 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 2 2 2 80 9 81852156 81854182 ATGTTGCTTCATACTGGAGAG 58 81852096 81852116 CTTGGATAGGTAGCTAACGTC 58 NA Rattus norvegicus 81 AABR07043701.1 ENSRNOG00000050237 ENSRNOT00000072022 1 1 1 80 19 36155325 36155346 AACTTAGAGGTGGAGAACACTG 60 36153894 36155286 GAGCAGGTTTCTAGAGAAGGT 59 NA Rattus norvegicus 81 Pip4k2b ENSRNOG00000013030 ENSRNOT00000017989 3 1 1 80 10 85683916 85683936 CCAGAAAGTGAAGCTATTCCG 59 85672483 85683874 AGCTCATTGATCGTGTGGT 59 NA Rattus norvegicus 81 LOC680646 ENSRNOG00000022450 ENSRNOT00000036337 2 1 1 80 6 58388534 58388556 GGGACTATAATGGTCATGTAGGT 59 58388595 58388639 TCTTCACCCATAGACCTTGG 59 NA Rattus norvegicus 81 Tnfrsf25 ENSRNOG00000021814 ENSRNOT00000055466 1 1 1 80 5 169291300 169291417 CTGGAAGCAGATGTTCTGG 58 169291460 169291479 CGACAGTATGCACAGATCAG 59 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672,ENSRNOT00000078647 3 2 2 81 10 12989801 12989902 CAGACTGGATGGTCTGTGG 60 12989738 12989756 ATGGGAAAGACCGTAGTGG 59 NA Rattus norvegicus 81 Lrch2 ENSRNOG00000029582 ENSRNOT00000045463 1 1 1 80 X 118546292 118546310 AGTGGCAATGAGAATGAGG 58 118540345 118542887 GTCATAGTCCTCAGATGATACC 57 NA Rattus norvegicus 81 Vps4a ENSRNOG00000020351 ENSRNOT00000050612 1 1 1 80 19 39235262 39235375 ACGCCATCAAATATGAAGCC 59 39235418 39235436 CCGCTCTGTCTAGGTACTG 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447,ENSRNOT00000087632 3 2 2 80 7 142158375 142161674 GATACTGGACATCGATATCCCA 59 142158316 142158335 AACTCCACTGTGTTTAGCTG 58 NA Rattus norvegicus 81 Mcm7 ENSRNOG00000001349 ENSRNOT00000001825 3 1 1 80 12 19310151 19310169 GAAGAGCGAGGATGATGTG 58 19310008 19310109 TCATAGAAATCTTCCTCGGCA 59 NA Rattus norvegicus 81 Plet1 ENSRNOG00000024346 ENSRNOT00000059210 2 1 1 80 8 54930357 54930376 TCTAAACAACTCAGCCTTCC 58 54930418 54932613 ATGAAGATCGTCAGGTTGAC 58 NA Rattus norvegicus 81 Mrpl49 ENSRNOG00000020975 ENSRNOT00000028475 3 1 1 81 1 221417474 221417586 TGACATCTGGGCTCTACAG 59 221417411 221417430 CTCATTAACCTGGGTGACAG 58 NA Rattus norvegicus 81 LOC683295 ENSRNOG00000009160 ENSRNOT00000039417 3 1 1 80 7 143271212 143271337 GAACCAGTCAACATCTCTGTG 59 143271152 143271170 GCCAGAGATACTGTTGGCA 60 NA Rattus norvegicus 81 AABR07049579.2 ENSRNOG00000050523 ENSRNOT00000072754 2 1 1 60 5 129381162 129381182 CATCAGCAGTTCAGTTCACAG 60 129381204 129381222 CGGGAAGTGTTTGTGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036,ENSRNOT00000013366 1 2 2 80 15 103845998 103846018 TTACCCTCTTCTTCCCATCAG 59 103836727 103845961 GTAACAGAAAGTTCTTGATCCTCC 60 NA Rattus norvegicus 81 Rn60_13_0842.1 ENSRNOG00000026715 ENSRNOT00000031809 1 1 1 60 13 79239017 79239037 TCTGTACCACCTTACAATGCT 59 79238977 79238997 TGAGTAGAGCTTTCTGATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rspo3 ENSRNOG00000011568 ENSRNOT00000015395 3 1 1 82 1 30713329 30713347 TTGGAAAGTGCCTTGACAG 58 30713389 30718308 CTCACAGTGTACAATACTGACAC 59 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 1 3 3 80 15 24161528 24164288 CAACGCAAACAGTATCACTC 58 24164331 24164349 TTGTTCTCATTGAAGCGGG 59 NA Rattus norvegicus 81 Nenf ENSRNOG00000003833 ENSRNOT00000005190 2 1 1 80 13 109990579 109991745 CTCATGACATTTCTGGTCTCAC 59 109990520 109990540 GGTATTTGGCTTTGTACACCT 59 NA Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510,ENSRNOT00000083831 1 2 2 80 18 59069778 59070913 ACCAGATAATGGTCAGGGT 58 59069716 59069735 CTTTCTGCCTCCTCAAAGTC 59 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 2 1 3 65 10 13289724 13306099 GTCTGTCTGCTCTGGAGAG 59 13306127 13306146 AATCTGGCACTTAGAAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Gabrd ENSRNOG00000016385 ENSRNOT00000022246 2 1 1 81 5 172799057 172799613 GAACTTCAAATCAGCTGGC 57 172798994 172799012 CTGGATGATGTAGACACCC 57 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 3 2 2 80 12 16918362 16918486 AGGCAAACCTATCAGGTCC 59 16918528 16918548 AAGCGTAAGAAAGTGATGGAG 59 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 1 2 2 84 6 99388224 99388242 TTTACTTCAAAGCCCACCG 58 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Olr542 ENSRNOG00000050876 ENSRNOT00000046167 2 1 1 60 3 75088552 75088573 CAAACTAGATTTCTGTGGTCCC 59 75088513 75088531 AAGAGGAGGAACGTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362751 ENSRNOG00000031052 ENSRNOT00000042825 1 1 1 60 14 44375502 44375526 GAAGAAAGATGAGAAGAAAGAGGAG 59 44375466 44375486 CAGGTCAAATCCCATGTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir449c ENSRNOG00000036435 ENSRNOT00000054547 3 1 1 60 2 44896102 44896120 CTGGCTGTTAGAACTTCGT 58 44896144 44896162 TTCTAAGTGCAGCAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrta1 ENSRNOG00000024093 ENSRNOT00000038972 2 1 1 132 5 108278851 108278869 CATGACTGTAGCTGCTCTG 58 108281474 108281494 GCATGACTCACAGTTACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471,ENSRNOT00000058548 1 2 2 80 17 63284762 63284780 AGTCTCAACCAGAAAGCCA 59 63284820 63286377 CAAGATTCTCCCTAGATAAGCAG 58 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181,ENSRNOT00000090273 2 2 2 80 20 20352511 20353213 TGAACTCACTGTGAATGGGA 59 20353256 20353274 ACCTTTAGGGTGTCAACCA 59 NA Rattus norvegicus 81 Slc30a1 ENSRNOG00000004749 ENSRNOT00000006340 1 1 1 60 13 110678557 110678575 GGCTAACACCAGCAATTCC 59 110678598 110679881 TCTCAACTTCTCTGGCTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Olr788 ENSRNOG00000031865 ENSRNOT00000046162 1 1 1 60 3 103300688 103300709 AACACTCTTCAAGTGGTTTCTC 59 103300649 103300669 ACTACTAAGACATGAGCTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atpif1 ENSRNOG00000013300 ENSRNOT00000018038 2 1 1 88 5 150719829 150722992 GGATCGGTACTTCCGAGAG 59 150719759 150719777 TCTCCTTCGAATGGTGGTC 59 NA Rattus norvegicus 81 MGC105649 ENSRNOG00000050251 ENSRNOT00000073569 1 1 1 94 3 114773051 114773913 CGACGTGGTTATTGATCGA 58 114775247 114775265 TCCATTCCTGGTTGATGGT 59 NA Rattus norvegicus 81 Fbxo18 ENSRNOG00000018549 ENSRNOT00000025228 2 1 1 80 17 70423124 70423824 GAGTGAGAAGCTGAATGGTG 59 70423867 70423885 GCCTCTTCTTTGCATTCCC 59 NA Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000015511 1 1 2 80 15 24090881 24090902 TGAATAATCCTTACCAAGTGCC 59 24090941 24100139 CACCTTAATGGTAAGAGTGGG 58 NA InUTR Rattus norvegicus 81 Ndufs1 ENSRNOG00000011849 ENSRNOT00000015852 3 1 1 80 9 69925709 69925727 AAAGTAGCAGTGACACCTC 57 69923307 69925666 AGTGATACCTGCAATCTCAG 57 NA Rattus norvegicus 81 Car2 ENSRNOG00000009629 ENSRNOT00000013354 1 1 1 80 2 88111622 88111640 TGCTTCCAAGAGCATTGTC 59 88105018 88111579 TCTTTCAGCACTGCAAAGTC 59 NA Rattus norvegicus 81 Car11 ENSRNOG00000021017 ENSRNOT00000028540 2 1 1 80 1 101686284 101686383 ATTACCTCCCTCCAGATGC 59 101686427 101686445 ATTACCACTGAGGCTCTGG 59 NA Rattus norvegicus 81 Mir34a ENSRNOG00000035623 ENSRNOT00000053746 3 1 1 60 5 167092517 167092537 GTCTTAGCTGGTTGTTGTGAG 59 167092558 167092577 TCTAGGGCAGTATACTTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc2hc1c ENSRNOG00000027115 ENSRNOT00000009156 1 1 1 75 6 109112662 109112680 GCAGTACTTGAACTGGAGG 58 109118920 109118938 CTTCTGTCTCCAGGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249,ENSRNOT00000000474 2 2 2 80 1 167071801 167072115 CCTTTCCTTTAAGGTGCGA 58 167072159 167072177 CTGTGCTCCTCTATCAGGT 58 NA Rattus norvegicus 81 LOC499306 ENSRNOG00000054336 ENSRNOT00000077274 3 1 1 81 1 221568995 221569013 GTTCCTTCATGCAGGAACC 59 221569052 221578492 CTTATCCTCTATTTCTTCTCCTCTG 58 NA Rattus norvegicus 81 Ubl3 ENSRNOG00000000921 ENSRNOT00000061229 1 1 1 87 12 7904380 7904399 CGAAAGAGTTCCTCTTCTCC 58 7904449 7906876 TCTTCTTCCCAGTCCATGG 59 NA Rattus norvegicus 81 Olr566 ENSRNOG00000053263 ENSRNOT00000079476 3 1 1 60 3 75518926 75518946 CTTTCACACTGATACTTGCCT 58 75518968 75518986 GTTGGCAGCTTCAGAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmym4 ENSRNOG00000012397 ENSRNOT00000016992 1 1 1 80 5 144910431 144913317 AATGCCAGACAGACACTCC 60 144910369 144910390 GAAGAGGTATGGGAACAAACAC 59 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000038480 3 1 2 80 7 143601534 143603431 CATTGACAAGGTACGCTTCC 59 143601473 143601492 GATGTCTTCTGCTGTTGCAG 60 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000077967,ENSRNOT00000089775,ENSRNOT00000031149 1 3 4 80 12 14569058 14574881 GGAGTCAGTTCCTTCAGCA 59 14568996 14569014 GAAGCCCAAGTCAGTAGGA 59 NA Rattus norvegicus 81 AC113925.2 ENSRNOG00000061299 ENSRNOT00000090745 3 1 1 139 1 168957927 168958584 TGAGAACTTCAGGCTCCTG 59 168958687 168958705 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Fgfr1op ENSRNOG00000055093 ENSRNOT00000085501 1 1 1 80 1 53124295 53126538 CAGTGACAAACTCGATGACC 59 53124234 53124255 GCAACATCTTCCAGATAGTCAG 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407,ENSRNOT00000015828 2 2 2 81 4 81255950 81256685 CTCATGAAATGGAAGGACTCAG 59 81256726 81256745 CGATGACAATCTGAGGACAC 59 NA Rattus norvegicus 81 Vom1r7 ENSRNOG00000061043 ENSRNOT00000091192 2 1 1 60 1 60087593 60087614 TGGTGGGTAATGAATATCACAG 58 60087554 60087574 CAAATGGGCCTAAAGTAGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gp6 ENSRNOG00000047204 ENSRNOT00000071927 3 1 1 81 1 73046103 73046125 CTGCTCATATCAGAATGAGAGTC 59 73046165 73047556 GGGCTTAGAGTAAACACCTG 58 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 2 2 2 80 1 154152106 154165295 CAGGTCTTAAATCTGGAGAAGGA 60 154152048 154152066 CAATCTGGGCAACAGATGG 59 NA Rattus norvegicus 81 Ucma ENSRNOG00000017987 ENSRNOT00000066850 3 1 1 81 17 77256553 77256574 CTTCGGAGGGAGTATTATGAGG 60 77252531 77256513 TCCTTTCTTCCTGCTCATCTC 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000064873 1 1 2 85 7 118490615 118490633 GTCTGGATTCCGGTCAGAG 60 118490681 118492883 AAAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Eif1ad ENSRNOG00000020463 ENSRNOT00000027753 1 1 1 82 1 220748078 220748096 CAAGAGGAAGCATGTGGTG 59 220748139 220748306 TCCTGAGGACTTTCACTATCTG 59 NA Rattus norvegicus 81 Ikbke ENSRNOG00000025100 ENSRNOT00000038151 1 1 1 80 13 48048759 48048780 GAACTGTCATCCATGTCTTCTC 59 48048058 48048718 AGATGGCAATCGTGTTGTG 59 NA Rattus norvegicus 81 Mir3565 ENSRNOG00000035486 ENSRNOT00000053609 3 1 1 68 14 66923128 66923147 TTTACTCATACCTCGCAAGC 58 66923177 66923196 TGTAGTGATAACGTAGCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl28 ENSRNOG00000004218 ENSRNOT00000005821 2 1 1 80 6 86695829 86703611 TTGCCTGTTTGGATAGTGTG 59 86695768 86695787 AGCGAGGAATATTTAAGGGC 58 NA Rattus norvegicus 81 Taar7c ENSRNOG00000047825 ENSRNOT00000050763 3 1 1 60 1 22508102 22508120 CAGAGATCTGCTCTCAGCC 60 22508060 22508080 ACAGGATCTGTTCAGGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 2 2 2 80 13 99234195 99234213 ATCTACCTCTTCCTCACCG 58 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Rn60_20_0028.1 ENSRNOG00000059667 ENSRNOT00000087688 3 1 1 60 20 2791511 2791534 TCTCTTCTGGAAGATATTACTGGG 59 2791474 2791492 ATCCATTTGCTGCCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ina ENSRNOG00000020248 ENSRNOT00000027417 2 1 1 80 1 266783904 266783922 CAATGAATCCCTGGAGAGG 57 266783966 266790181 CCAATGCTATCCTGGTAGC 58 NA Rattus norvegicus 81 Repin1 ENSRNOG00000008239 ENSRNOT00000011032 3 1 1 159 4 78233377 78233401 GATAGGGATGTCTTTATTGCTACAG 59 78233517 78234743 TTCTTCCTCTGCCTGAAGAC 60 NA Rattus norvegicus 81 Olr528 ENSRNOG00000061596 ENSRNOT00000013150 2 1 1 60 3 74475404 74475423 TCTCTGTGCTGTTTCTCCTG 60 74475363 74475383 AGTATCATGCCTATGTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vash1 ENSRNOG00000010457 ENSRNOT00000014017 3 1 1 80 6 110633680 110633699 GATCTGGCCAAGGAAATGAC 59 110633740 110634380 GTTGGTGAGGTAAATTCCCAG 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342,ENSRNOT00000030352 3 2 2 86 4 22654127 22655960 CCATTCCCTAAAGGCAAGTG 59 22654060 22654078 CCATGCTTTCTTGCTCTCC 59 NA Rattus norvegicus 81 Pold1 ENSRNOG00000019681 ENSRNOT00000026797 1 1 1 80 1 100544780 100544798 CTGTGAGCTTCCACTTCCT 59 100544477 100544739 GTTCATTCCCATTCTGTAGGTC 59 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679,ENSRNOT00000035317 3 2 2 80 18 73623146 73623166 TATACCACAGATGTGGGAGAG 59 73623208 73624488 CTCCAACTTGTGGAACCTG 58 NA Rattus norvegicus 81 Tbkbp1 ENSRNOG00000009370 ENSRNOT00000012462 1 1 1 80 10 85083445 85083673 CAGTTCCAACACGAGTTGC 60 85083383 85083402 ACACAGTTTCTCGTAAGCCT 59 NA Rattus norvegicus 81 Mmp10 ENSRNOG00000032832 ENSRNOT00000013119 2 1 1 88 8 5734464 5735119 GATCTTGCTCAGCAATACCT 58 5735170 5735188 ACAACAGGACTACTGTCCT 58 NA Rattus norvegicus 81 AABR07051241.1 ENSRNOG00000046756 ENSRNOT00000074026 1 1 1 60 3 2513293 2513311 TTTGCCTGTCCCTTTACTG 58 2513340 2513358 CAAGTAAGCAAGCAGACCA 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc104 ENSRNOG00000003901 ENSRNOT00000005306 1 1 1 80 14 113620215 113622599 CGTCCTCAGAAGTTAAAGTGC 59 113620155 113620174 AAGTTTCAGGCAACAACTCC 59 NA Rattus norvegicus 81 Olr517 ENSRNOG00000032434 ENSRNOT00000046947 1 1 1 60 3 74058825 74058844 TGTGACATTCCTCCATTGCT 60 74058864 74058885 GCAGAAGCTGGTTTATATTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 2 2 3 80 7 42331550 42332269 GTCCTGAGAAAGATTCCAGAG 58 42332310 42332329 TGTCATTCCTAAGGGAACTG 57 NA Rattus norvegicus 81 Angptl7 ENSRNOG00000009589 ENSRNOT00000012726 1 1 1 80 5 165314195 165314214 ACTACCGAATCTCTGGAGTG 59 165313623 165314152 CCATGTCACAGAACACCTC 58 NA Rattus norvegicus 81 LOC102557302 ENSRNOG00000047845 ENSRNOT00000040545 1 1 1 92 19 29133721 29134758 GAATGTTCAACGCTGGGAG 59 29133647 29133667 GCTCTTTAATCAGCCTCTCCT 60 NA Rattus norvegicus 81 Lrrc9 ENSRNOG00000005409 ENSRNOT00000007339 2 1 1 80 6 95257022 95273115 GGAATGTCAATTGAACCATCAG 58 95273155 95273174 TTCAGCAATCATGTCAGAGG 58 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 1 2 2 80 10 85993694 85993712 GAGCGTGATGAGCTAACAG 58 85993540 85993651 GGCTGTGAATACACTGTCAC 59 NA Rattus norvegicus 81 Dcn ENSRNOG00000004554 ENSRNOT00000006070 2 1 1 80 7 38778310 38781585 AGCATAAATATGTCCAGGTCGT 60 38781626 38781644 ATGAAGGGAGGCAGAAGTC 59 NA Rattus norvegicus 81 Olr518 ENSRNOG00000029222 ENSRNOT00000041668 3 1 1 60 3 74371029 74371047 GGCAGCAATGGCTTATGAC 60 74370987 74371007 TTTCACTGCATAGAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mnat1 ENSRNOG00000007267 ENSRNOT00000010163 2 1 1 80 6 96108029 96152904 GAAGACTTGGGTATTTGAACCA 59 96152940 96152963 GACAAGCAAGAGAAGAAGTATAGC 60 NA Rattus norvegicus 81 Defb19 ENSRNOG00000036898 ENSRNOT00000055409 2 1 1 120 3 148035216 148042474 GTTTCCAGTCTACAGGTGC 58 148042558 148042576 TGCAATACAGCAGTAGTCC 57 NA Rattus norvegicus 81 Ccdc158 ENSRNOG00000002204 ENSRNOT00000003009 2 1 1 80 14 16956784 16956805 TCAAGATATAATACAGCGCCAG 58 16956844 16957926 CCCTGAAGTTCTTTCACATCC 59 NA Rattus norvegicus 81 AABR07066677.1 ENSRNOG00000049939 ENSRNOT00000074599 2 1 1 137 9 12346196 12346882 ACAGTTCCTACCGCATCAG 60 12346983 12347001 TTGTCTCCACAGAGGATGC 59 NA Rattus norvegicus 81 Atp6v1g1 ENSRNOG00000008163 ENSRNOT00000011508 2 1 1 68 5 79371687 79371705 AGGGAGAAGGAGTTCAAGG 58 79373117 79373135 CACCTCACTGCTACAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Eif3m ENSRNOG00000012738 ENSRNOT00000017409 1 1 1 80 3 95003150 95003418 CTGGACCAAGTGAGAAAGTG 59 95003089 95003112 CTCATAGAGAAGTCTTAAGAGGGT 59 NA Rattus norvegicus 81 AC107531.1 ENSRNOG00000032984 ENSRNOT00000051398 3 1 1 60 1 168845312 168845333 TCTCATTCTCATCAAATGCAGG 59 168845353 168845372 GTATGAGTGCAACACAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893,ENSRNOT00000088292 1 2 2 80 1 5261418 5261540 TCATTGACCAAATCCAGATCC 58 5261582 5261600 GGTAGAAATGCCTCTCCAC 58 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893,ENSRNOT00000088292 2 2 2 80 1 5261421 5261541 TTGACCAAATCCAGATCCC 57 5261585 5261603 GGTGGTAGAAATGCCTCTC 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 3 2 4 80 2 182032104 182032122 GCAGGTCAGAAGAAAGTGG 59 182031600 182032061 ACATAGCACTCCCATGTCTC 59 NA Rattus norvegicus 81 Ppef2 ENSRNOG00000052061 ENSRNOT00000077636 2 1 1 80 14 17316918 17316937 AGCTACAATTCCTGATCCGA 59 17315148 17316876 AAATGGTTAACACCTTGCGG 60 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 1 2 2 117 3 164275575 164275593 GAAGATGCACATCCGAAGC 59 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 3 2 3 80 3 113311141 113311161 GATGTGATCCTAAATGAGCCC 59 113310681 113311099 GAGAGGAAAGCCTTTGGAG 58 NA Rattus norvegicus 81 Cox16 ENSRNOG00000047115 ENSRNOT00000008954 2 1 1 80 6 105209962 105214126 GAGTTCCCATGTTGTTGCTG 60 105209901 105209921 TTGTCACAGCATCATATCGGA 60 NA Rattus norvegicus 81 Gch1 ENSRNOG00000011039 ENSRNOT00000014821 1 1 1 80 15 23949749 23949768 AGATGGTGATTGTGAAGGAC 58 23947071 23949706 CAATATGGACCCTTCCCAC 58 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 2 1 1 69 6 98601673 98605982 TGACGCAGTTCCTGATGAG 60 98601622 98601643 AACTGGTCCTTAATCTTCTCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 1 3 5 80 20 3409193 3409317 ATCAGAAGCAGATTCACCC 57 3409131 3409150 GGATCTTCTTCCTTGACGAC 58 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 1 2 2 80 1 84123004 84123022 CAGTCATTGTGTCCTCACG 59 84122127 84122961 TTGGCATTCATCCACATCTC 58 NA Rattus norvegicus 81 Mir6321 ENSRNOG00000049481 ENSRNOT00000073362 2 1 1 60 14 21097453 21097472 GTTGAAGTCTCAGGTAGCAG 58 21097412 21097431 TGAGGCTTCATAGAACTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps25 ENSRNOG00000010912 ENSRNOT00000014933 1 1 1 80 4 124037534 124042594 TGCGGTTCTACCTAGAATCTG 59 124037474 124037493 TTATGTGCTCCACGATCTCC 60 NA Rattus norvegicus 81 Mrps25 ENSRNOG00000010912 ENSRNOT00000014933 2 1 1 80 4 124037534 124042593 GCGGTTCTACCTAGAATCTG 58 124037473 124037492 TTTATGTGCTCCACGATCTC 58 NA Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 3 2 2 134 7 11241297 11241788 GAATGGACACAAGGGTGTG 59 11242245 11242263 AAAGCCACGTTCATCTTCC 59 NA Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000029488,ENSRNOT00000082139 3 2 2 80 15 27720960 27722470 CTTCCCATCAGGGAATAGC 57 27720898 27720917 TGAACATCTTCATCTCCACC 57 NA Rattus norvegicus 81 Olr862 ENSRNOG00000046223 ENSRNOT00000072067 1 1 1 60 5 137603005 137603024 TGTGTCTGTGGTTTCTTCTC 58 137602964 137602982 AATAGGGCAGTCTCATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr856 ENSRNOG00000057199 ENSRNOT00000084932 1 1 1 60 5 137725485 137725504 TCTATAACATTGCCACAGCC 58 137725444 137725464 ACATCCTTGTTCCTTAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr597 ENSRNOG00000032521 ENSRNOT00000049471 3 1 1 60 3 76044807 76044827 TGCATCTTTACCGATGTTGAG 59 76044848 76044867 CCTTGTACCGATCAAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1396 ENSRNOG00000048331 ENSRNOT00000045600 2 1 1 60 10 34713396 34713415 TCTTCTGTGAGATGCCTGTG 60 34713437 34713456 GCCTCTGTATCTCCTGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppid-ps1 ENSRNOG00000055834 ENSRNOT00000089469 1 1 1 60 20 2443497 2443517 CAGGCAGAACTGCTTAAAGTC 60 2443457 2443480 CTGCCTTCTCTTTATCTTTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 2 2 2 84 1 73234282 73251819 GGTGACAGGCTTGTATGAC 58 73234216 73234236 ACACTTGAAGGAAACGTTCTC 59 NA Rattus norvegicus 81 Bms1 ENSRNOG00000006576 ENSRNOT00000008741 1 1 1 80 4 150466300 150466321 CATTATTGAGTGTGGGTGTGAC 60 150465446 150466263 GCATCTATAAGCATTAGCACCAG 60 NA Rattus norvegicus 81 Tex19.2 ENSRNOG00000036671 ENSRNOT00000054927 1 1 1 192 10 110307578 110307597 GCCTGTCTACTTCTCCAGAG 59 110307284 110307302 CATGGACAAGCTGGTACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100362142 ENSRNOG00000025580 ENSRNOT00000035048 1 1 1 80 3 164345240 164346228 AGTTCCAATGGAGTGGTGG 60 164345178 164345198 CAGGATGACTTTGATGCTGTG 60 NA Rattus norvegicus 81 Olr108 ENSRNOG00000015909 ENSRNOT00000021296 2 1 1 60 1 168639548 168639567 CTCAAGAGGCTACCATTCTG 58 168639590 168639608 TTGGGTGGATACAGTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a5 ENSRNOG00000018951 ENSRNOT00000064478 1 1 1 80 X 112981212 112982559 CAGACATGTTCAGTAAACCTCAG 60 112982599 112982617 TGCATACTTGACATCGGCT 60 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000001085 3 1 3 82 20 3399056 3399074 CCTGGCTCCTTATCTTCAG 57 3398693 3399012 CAGCACATGGTAATAAACCTG 57 NA Rattus norvegicus 81 Plekhn1 ENSRNOG00000020295 ENSRNOT00000038556 3 1 1 80 5 173650385 173650403 GTGAGGAACCTAGGCAAGG 60 173650225 173650343 ATAGCAGTCACTGATGTCCTG 60 NA Rattus norvegicus 81 Fam131a ENSRNOG00000045653 ENSRNOT00000073526 3 1 1 85 11 82879546 82879732 TCCCTGCATGGTATTTCCC 60 82879479 82879497 TCGATAAGGTGAGCCACAC 60 NA Rattus norvegicus 81 Csn3 ENSRNOG00000001951 ENSRNOT00000002671 2 1 1 81 14 21808312 21808334 CGTAGTTATGAATATCCTGGCAC 59 21806421 21807648 CTTCTCACGGCAGTTTGAG 59 NA Rattus norvegicus 81 Nfam1 ENSRNOG00000022975 ENSRNOT00000037681 3 1 1 81 7 123878294 123878313 AGGCACTTACTACTGCAGAG 59 123876950 123878250 GTACCCTGTGTCTCTGACC 59 NA Rattus norvegicus 81 Olr544 ENSRNOG00000031356 ENSRNOT00000051625 3 1 1 60 3 74867788 74867806 TTATGTACTTGCGTCCCAC 58 74867746 74867767 AACAGAGCAACTACCTTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galnt4 ENSRNOG00000053075 ENSRNOT00000086483 1 1 1 80 1 213873599 213873703 CGGGAAGAGTTCAAAGGAC 58 213873747 213873765 GTTTCTTCTCAAGTGGCCC 59 NA Rattus norvegicus 81 Prss34 ENSRNOG00000018466 ENSRNOT00000024904 2 1 1 82 10 14657239 14657257 AATGGGAACACATCTGTGG 58 14657300 14657527 CATCTCTTTCAGCTCTACACAG 59 NA Rattus norvegicus 81 Cyp2d4 ENSRNOG00000032261 ENSRNOT00000011880 1 1 1 80 7 123601769 123601787 AGAAGTCACTGGAGCAGTG 59 123601627 123601727 TGAAAGGGAATCCACTATGGT 59 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 2 2 2 80 7 142109763 142109782 CAAGTGTCTCTTCATAGGCC 58 142109822 142111977 CTAGGAAACAGGTACATTAGCA 58 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 3 2 2 80 14 21042289 21042307 TACCTCATTCGAGCTCAGG 59 21042351 21043380 TCGGATTCTGCAGTCTGAG 59 NA Rattus norvegicus 81 AABR07017560.1 ENSRNOG00000043459 ENSRNOT00000067148 1 1 1 80 15 26924198 26924220 GGTCAGTAGGTATCCATTCGG 60 26924138 26924158 AGCTATCTACCTCATTGGGAC 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382,ENSRNOT00000067141 3 3 3 96 19 53641908 53642511 ATAATTAGAAGGCGCCTGC 58 53642571 53642589 CTTCAGAGATGGGTGTGGA 59 NA Rattus norvegicus 81 Rpusd1 ENSRNOG00000023639 ENSRNOT00000015206 2 1 1 80 10 15100309 15100327 TCAACTATGCCATTGGCAG 58 15100370 15100528 GGTTCTCACAACCATGAGTG 59 NA Rattus norvegicus 81 Zfp518a ENSRNOG00000036592 ENSRNOT00000054717 3 1 1 163 1 260171522 260171926 GCAACCTGTAATCAGGTGC 59 260172052 260172071 CTGTGTCTGTTCAAATGGCA 59 NA InUTR Rattus norvegicus 81 Rgs9 ENSRNOG00000003800 ENSRNOT00000005076 3 1 1 80 10 97555623 97555641 ACAAAGCTGACAGGTATGC 58 97545731 97555580 CATTGTTCATTCCAGGAGGG 59 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 2 2 2 80 4 72016402 72016700 AAATAAGCACAGGCAACGA 58 72016340 72016359 GAAGTGTTACTTGTGCAACC 58 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000038006,ENSRNOT00000088884 1 2 2 80 13 90064925 90065152 CTGTAAAGATGCTGCCAAGG 59 90064864 90064882 AACAGGACGAGCACTAGTG 60 NA Rattus norvegicus 81 Taf7l ENSRNOG00000026315 ENSRNOT00000045556 3 1 1 80 X 105302988 105303008 GAGTTTAAGGCATGAGGAGTC 59 105300853 105302948 GCATGATGTCCATCAGTTACC 59 NA Rattus norvegicus 81 Yjefn3 ENSRNOG00000039191 ENSRNOT00000065345 3 1 1 96 16 21286812 21286921 CTACGGGTGTTCGAATACCA 60 21286980 21286998 TGTCCATCTTCTCGCACTG 60 NA Rattus norvegicus 81 Tulp4 ENSRNOG00000018012 ENSRNOT00000024412 1 1 1 80 1 47120854 47122358 TGACTTACCAGTTACGGGAG 59 47122401 47122419 TGGATTGGTGCAATAGGGA 59 NA Rattus norvegicus 81 Pias2 ENSRNOG00000017493 ENSRNOT00000023886 1 1 1 80 18 73378789 73479869 TTCGAGGAGTTGAGGAATATGG 60 73479909 73479928 TTTATTCCGTCCAGCAAAGC 59 NA Rattus norvegicus 81 Pias2 ENSRNOG00000017493 ENSRNOT00000023886 2 1 1 80 18 73505177 73505197 GTGAGATTGTCTTCAGCTGTG 59 73505234 73507375 CACAGACATGGAGTAATTCTTTCC 60 NA Rattus norvegicus 81 Blk ENSRNOG00000010798 ENSRNOT00000015021 1 1 1 80 15 46567652 46567670 GTTTGACTATGCCGCTGTG 60 46566590 46567609 TCTCCAGTGCTCTTCAAGAC 60 NA Rattus norvegicus 81 Olr691 ENSRNOG00000048259 ENSRNOT00000047425 3 1 1 60 3 78087144 78087163 GACCTCTGCTATACCTCCAC 59 78087180 78087204 TCCTTTCTATGATGAGATCACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acy1 ENSRNOG00000011189 ENSRNOT00000015851 2 1 1 80 8 115136959 115136977 ATACGGGTTACCAGCACTG 60 115136810 115136917 AACCTTATGCAACTTCTCAGC 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 3 5 5 102 19 43269793 43269811 AGAGATGATGGTGGAGCAG 59 43269877 43270250 AACATCAATACCACGGGCA 60 NA Rattus norvegicus 81 Olr1240 ENSRNOG00000049725 ENSRNOT00000074752 3 1 1 60 4 1521768 1521788 TTACTTCTGTGACATCCTCCC 59 1521809 1521828 TTCATTGACATAGGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heatr5a ENSRNOG00000006483 ENSRNOT00000035309 1 1 1 80 6 72730129 72730148 GGATGTTTACAAGGCTGCTC 59 72729528 72730086 TCGAGAAGACACTTGGCAG 60 NA Rattus norvegicus 81 LOC100361475 ENSRNOG00000033891 ENSRNOT00000045139 2 1 1 80 20 33175118 33181030 TGAGAATGCTGCTGTTTGTG 60 33181070 33181091 AGCAAGTATCTTCTTTCCTCCT 59 NA Rattus norvegicus 81 Fbxl16 ENSRNOG00000022248 ENSRNOT00000039777 1 1 1 89 10 15184356 15184374 TCGACAACTACTCGCTCTC 59 15184426 15185107 CCAACATCACCTCTAGACCA 59 NA Rattus norvegicus 81 Tfap4 ENSRNOG00000005227 ENSRNOT00000006979 2 1 1 92 10 11215980 11216359 TTTATCCAGGAGCTGAGTGG 59 11216414 11216432 CTCATCCTCCCAGATGTCG 59 NA Rattus norvegicus 81 Olr808 ENSRNOG00000029299 ENSRNOT00000048987 1 1 1 60 4 72273456 72273477 GTCTTACATCCAGATCATCTCC 58 72273498 72273516 CTTTCTCCTTCCCTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Matk ENSRNOG00000020431 ENSRNOT00000027730 2 1 1 80 7 11326600 11326705 CTGTGATGACAAAGCTGCA 59 11326538 11326556 CCATGACAATGTACAGGCC 59 NA Rattus norvegicus 81 AABR07014573.1 ENSRNOG00000023418 ENSRNOT00000038393 2 1 1 60 14 21770614 21770633 ACATAACTACCACACCTCCC 59 21770573 21770591 TTGTCTCCAGTAAGCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef18 ENSRNOG00000028090 ENSRNOT00000066281 2 1 1 80 12 1993722 1993832 CCTGGAATCAGAGCTGGTC 60 1993985 1994003 TCCTGTTGAGCGATGACTG 60 NA Rattus norvegicus 81 Dhx16 ENSRNOG00000030157 ENSRNOT00000065025 3 1 1 80 20 3377275 3377293 TGGTCGAAAGATGGCAGAG 60 3372056 3377236 TCTGAACAGCTATACTTCTCAGAG 60 NA Rattus norvegicus 81 Fam69b ENSRNOG00000004532 ENSRNOT00000006186 3 1 1 81 3 4087809 4087827 AGCTGGATGGTCTATGTGC 60 4087872 4089860 ACTGGTCACAGATCACCAC 59 NA Rattus norvegicus 81 Col24a1 ENSRNOG00000014143 ENSRNOT00000019210 3 1 1 80 2 251429978 251434792 CAGATGACTGCAAGATTCAGG 59 251434831 251434852 CAGGAAGCTGATTAGGATTCTG 59 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 3 2 2 80 15 28706867 28707117 GAGTGTCAGGCTACTGTGG 60 28707161 28707179 AGTAGTCACAGGAGGTGGT 60 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 2 2 2 81 6 122955445 122955467 CAAGGCTTAGATAAGTTTCCAGG 59 122955505 122964950 ACGAACTGTTGTTCATTTCCTC 60 NA Rattus norvegicus 81 Olr1432 ENSRNOG00000002858 ENSRNOT00000003818 1 1 1 60 10 44256650 44256668 CTTTCCCTGCCTGTATGAC 58 44256608 44256626 AAACACTCAGTAGCACCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 3 1 1 61 15 23603585 23603603 AGATGATGTACGCTGGGAG 59 23601470 23603562 AAATACCTTAGTTAGCTCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Lrsam1 ENSRNOG00000022312 ENSRNOT00000060186 3 1 1 80 3 11993695 11993713 TCCTGCAGGACAATCAGAG 59 11989629 11992912 GCTGCTCCATTCGTATTCTC 59 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 2 1 1 63 15 28415134 28415477 TACCAGGAGCTACAGGAGG 60 28415504 28415522 CGGGATCATTCTCCAAACC 58 NA DesignNoJunction Rattus norvegicus 81 Ankrd49 ENSRNOG00000009233 ENSRNOT00000012583 3 1 1 81 8 13301310 13302314 AAAGAATCGGCTTGCTACAG 59 13301248 13301270 GGTATATTCATCTTCGTCTCTGG 58 NA Rattus norvegicus 81 Glb1l2 ENSRNOG00000007561 ENSRNOT00000037790 2 1 1 80 8 27812095 27812687 ATGTTACCAGCTATGACTACGA 59 27812036 27812054 AGAGTTCTCGAAGCTTGGT 59 NA Rattus norvegicus 81 Trap1 ENSRNOG00000005418 ENSRNOT00000008966 1 1 1 80 10 11738544 11738565 AAGTTGAAGTCTATTCTCGACC 58 11738605 11742148 TTTCAAACACTCCAGAACCA 58 NA Rattus norvegicus 81 Mrpl42 ENSRNOG00000042740 ENSRNOT00000066322 3 1 1 82 7 36588051 36588069 CATTGACGTCTGATGGCAG 59 36583689 36588005 ATGAGGGATAGGTTGGGTG 59 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 3 2 2 81 13 48828478 48833439 TGTTCATCAATGTGGTGGGA 60 48828416 48828435 CCCACAAACAGGAAGTTGAC 59 NA Rattus norvegicus 81 Fam160a2 ENSRNOG00000017408 ENSRNOT00000023502 1 1 1 80 1 170223314 170223332 CTGAGTCTCTTCAGGACCC 59 170223065 170223272 ACATGGGACAAGATACCTGAG 59 NA Rattus norvegicus 81 LOC690288 ENSRNOG00000048741 ENSRNOT00000075792 1 1 1 80 13 100045405 100045426 TTGCTACTTTAAGTTCCTGGAG 58 100045466 100048038 AAGCGATTCCTCTTTGTCTG 58 NA Rattus norvegicus 81 Dram1 ENSRNOG00000038916 ENSRNOT00000059487 1 1 1 80 7 28932443 28932462 TTCATCATCTCCTACGTGGT 58 28921370 28932400 AGTTGTTCCTGTGTCACTG 58 NA Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 1 2 2 80 8 99905573 99905592 CTGGTTTGGAATACTTGGCT 58 99908537 99909567 CAAAGCGTGTCATCAATTCC 58 NA Rattus norvegicus 81 Golga5 ENSRNOG00000007699 ENSRNOT00000010385 2 1 1 80 6 126353779 126355961 GAGCCAAAGTCCTGAAGTG 59 126356004 126356023 TTCGATACTGTGCTTTCCTC 58 NA Rattus norvegicus 81 Golga5 ENSRNOG00000007699 ENSRNOT00000010385 3 1 1 80 6 126353781 126355963 GCCAAAGTCCTGAAGTGAG 59 126356005 126356025 CATTCGATACTGTGCTTTCCT 59 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 3 2 2 80 1 220929923 220931401 AACCAAGATGAAGGTGACCT 59 220929862 220929880 TAGGTGAAGGACTTCTGGC 59 NA Rattus norvegicus 81 Wisp3 ENSRNOG00000000597 ENSRNOT00000000735 3 1 1 91 20 44243667 44243685 GAAGGAAGATCGATCCACC 57 44241067 44243612 GAGATTCCTGTAAGCTGGC 58 NA Rattus norvegicus 81 Olr235 ENSRNOG00000050756 ENSRNOT00000048370 2 1 1 60 1 172051606 172051624 GCTACTCCACTCTCATGTC 57 172051647 172051666 CCCGCATAGGAAATAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam124b ENSRNOG00000058883 ENSRNOT00000072054 1 1 1 116 9 90788618 90805176 ATTCTACTGCAGGTCCAGC 60 90788520 90788538 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 2 1 1 77 1 257080134 257081938 AAACTGGGTTCATAGGTCCC 59 257081978 257081996 GAATCATGGCACTGGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Gpatch1 ENSRNOG00000011584 ENSRNOT00000015791 1 1 1 80 1 91567527 91567545 TCAAGACAGAACAGAGCGG 60 91566569 91567488 TATCCCGAATTCACTAAGATCCTC 60 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000066043,ENSRNOT00000083132 3 2 2 80 5 35947483 35961103 GGAGACAAAGAGGATACAAGC 59 35961142 35961163 TTTCTAGTTTCCTCATCAGCAG 58 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 1 2 2 80 3 5118963 5118983 GAAGACCGAAATGCTACTCAC 59 5119022 5119667 GGAATCCATAGCCAAAGAAGAC 59 NA Rattus norvegicus 81 Il17c ENSRNOG00000013007 ENSRNOT00000017358 1 1 1 94 19 55246945 55247181 CTGTGATGTGTCTCCTGCT 59 55247239 55247257 TGTCGTCTTATGGCTTCGG 60 NA Rattus norvegicus 81 RGD1561252 ENSRNOG00000009530 ENSRNOT00000012842 1 1 1 80 15 86166380 86166776 AAGATGCACTTTGAATCAGGG 59 86166818 86166836 TCTGGCTCTTTCTTCAGGG 59 NA Rattus norvegicus 81 Spink4 ENSRNOG00000008252 ENSRNOT00000060714 3 1 1 62 5 57248652 57248670 GAATGAATGCCACCTCTGC 59 57250629 57250649 TCCTTCATGATCTGAATGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000040540,ENSRNOT00000085897 3 3 3 80 15 28307234 28307471 AGACCTCATTCCTCAAGATGG 59 28307043 28307062 ACTTGAAAGCTTCTGTCAGC 59 NA Rattus norvegicus 81 LOC100362409 ENSRNOG00000049515 ENSRNOT00000073734 3 1 1 80 X 83860207 83862010 CAATGTGATTTAGTTGCTGGGA 59 83860148 83860167 ATATTCCTCAGCCAGCTTCC 60 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218,ENSRNOT00000051075 1 3 3 80 7 71069459 71071036 TCAGACTCCCTCAGGAGAG 59 71071079 71071098 CACATCAGTCCTGAAGAAGC 59 NA Rattus norvegicus 81 Upf3b ENSRNOG00000039994 ENSRNOT00000032618 3 1 1 81 X 123723221 123725391 CGAGGATGATCCAGAATACAG 58 123723160 123723181 CAATGTCTCTGGAGTAGATGTC 58 NA Rattus norvegicus 81 Nfatc2ip ENSRNOG00000057384 ENSRNOT00000090200 2 1 1 80 1 197786217 197788332 TATCTCCTGATTCTCCTCTTAAGG 59 197786160 197786178 AGAAGGAGAGCTTGTGTCC 59 NA Rattus norvegicus 81 RGD1564801 ENSRNOG00000048095 ENSRNOT00000074520 1 1 1 60 1 75153276 75153295 CAGTTGAGCAGAAGCAAAGG 60 75153235 75153254 TGACCAAACTGGAGGATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564801 ENSRNOG00000048095 ENSRNOT00000074520 3 1 1 60 1 75153228 75153247 TCCAGTTTGGTCATGAGGAG 60 75153187 75153206 TCCTTGAAGTAGCCCATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr308 ENSRNOG00000050992 ENSRNOT00000047834 3 1 1 60 1 213288296 213288316 CTAGATCCAGCTACAACCCAG 60 213288337 213288356 CTGAGGACCGAGTATAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 2 2 2 100 20 45189915 45193524 TTTGTAAGCTCCATCGAGC 58 45189833 45189852 TAGTGTCCCAGAATGACCAG 59 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144,ENSRNOT00000079727 1 2 2 80 3 103845728 103845746 AGATGAAGAAGGACCTGGC 59 103845790 103846708 CACTGTCATGCATCTCCAC 59 NA Rattus norvegicus 81 Nob1 ENSRNOG00000021890 ENSRNOT00000034386 3 1 1 80 19 38405349 38406178 CTGTTTCAAGACAACATCGGA 59 38406218 38406238 GTCACAGACACTTTCTTCAGG 59 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000076609 1 1 2 84 2 184309479 184309497 GATGAATCGCGTGGTTGAG 59 184309320 184309431 AGAGTCCTCATCATTCCGC 59 NA Rattus norvegicus 81 Fam69c ENSRNOG00000015448 ENSRNOT00000020858 2 1 1 90 18 81587166 81587185 TTTCTTCGACTGTTTCTCCA 57 81587237 81590683 TTTATCACAGATGACCTGCA 57 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 1 1 1 75 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11477678 11479520 GATCTGTGTCAGGGTGACC 60 NA DesignNoJunction Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 2 2 2 80 X 114992188 114992208 TTGTACAGGAATACAGATCGG 57 114992248 114998951 CACAATGCTTCTTAGCTTCTC 57 NA Rattus norvegicus 81 Arfrp1 ENSRNOG00000013992 ENSRNOT00000019038 3 1 1 80 3 176861337 176861356 GCCATGGTGTCATCTATGTC 59 176860958 176861295 AAACCACCTTCTCAAATGCC 59 NA Rattus norvegicus 81 LOC100359587 ENSRNOG00000046646 ENSRNOT00000071887 3 1 1 95 15 32051687 32051800 TTTCTCCTGAGAGTTGCCC 59 32051858 32051877 ATACTTGCATCTCAGCTGCA 60 NA Rattus norvegicus 81 Olr1644 ENSRNOG00000039435 ENSRNOT00000060428 2 1 1 123 15 28915380 28915401 AGAACCAGGATAAGAGACTCTG 59 28910246 28910264 GTGTGGTTGATGAGGACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911595 ENSRNOG00000046581 ENSRNOT00000075061 3 1 1 97 5 67709287 67709305 CGAAATGATGGAGCTGGAC 59 67709366 67710824 CCTGTGCTTTCTGACTCTC 58 NA Rattus norvegicus 81 Uqcrb ENSRNOG00000024967 ENSRNOT00000037030 1 1 1 80 7 71265950 71265970 AGAAGCCATACGAAGGCTG 60 71265888 71265906 CGCATAGACAGGTCTAGGG 59 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 3 2 2 80 11 83990369 83990387 GGGAAAGTATTCTGTCGCT 57 83990428 83991146 AGACAATCTGATTAGGTGTGAG 58 NA Rattus norvegicus 81 Uevld ENSRNOG00000013624 ENSRNOT00000045719 2 1 1 80 1 102996673 102999444 CAGCAAAGATCTGTCTGCC 59 102996611 102996629 AGGTAGGACTCAGAACCAC 58 NA Rattus norvegicus 81 Mafk ENSRNOG00000001277 ENSRNOT00000001720 2 1 1 133 12 16926396 16927284 AGACATTGAAGGTCAAGAAGGA 60 16926284 16926302 CTTCAGCCGAGTTACCTCC 60 NA Rattus norvegicus 81 Snapc3 ENSRNOG00000010825 ENSRNOT00000015254 3 1 1 80 5 101543078 101543096 AGTGACCTCCAGATTGGTG 59 101543137 101548104 TGACTTGTATAGGTCTTTGCTG 58 NA Rattus norvegicus 81 Lpar5 ENSRNOG00000021401 ENSRNOT00000029053 2 1 1 60 4 157594680 157594699 AACACCTCTTCTACCGACAG 59 157594719 157594740 AACGATGTGTACTCCGATAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kat5 ENSRNOG00000061012 ENSRNOT00000088799 3 1 1 80 1 220968491 220968624 CAGATCACCATCAATGAGATCAG 59 220968433 220968454 GAGATTGAGATACTGCAGTGTG 59 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000089492 2 1 3 80 4 85299279 85301211 GATGACAAGGAGTATCCGC 58 85299217 85299235 CACGTGATGTTTCTCAGGA 58 NA Rattus norvegicus 81 Mepce ENSRNOG00000045911 ENSRNOT00000073353 1 1 1 138 12 21723413 21724515 TCGTCACGGGTAACTATGTC 59 21724616 21724634 CGGAACATTCTCTTCAGCC 59 NA Rattus norvegicus 81 Olr1437 ENSRNOG00000048938 ENSRNOT00000071556 2 1 1 60 10 44407544 44407562 GACACCTTCCTCTTCACAG 58 44407584 44407604 TGATGTTTCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr666 ENSRNOG00000049947 ENSRNOT00000044273 1 1 1 60 3 77618296 77618314 GATGCTTGTGTCTCCTCTG 58 77618254 77618273 TCCTTTCGTAAACCATGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858,ENSRNOT00000079812 1 2 2 80 15 4388363 4388383 GGCGGACTGTATAATCTTCTC 58 4382964 4388324 TGAAATCCCTCTTCCATATCTG 58 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000047666,ENSRNOT00000042281 1 3 4 80 8 53878295 53878663 GAGCTATCTGGAGGTAACCC 59 53878234 53878253 TCCTGTCCAATACGGTTCAC 60 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000072184 2 1 4 60 8 53871785 53871803 CTTGTTCCGTTGTCTCCTC 58 53870132 53870152 GTTCTGTGGTTGAAAGGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292,ENSRNOT00000016340 3 2 2 80 11 69805999 69806018 TCATTATGGCTGAACTGCTC 58 69806061 69806683 TTTCCCACAGGTAGGTCTC 58 NA Rattus norvegicus 81 Nek2 ENSRNOG00000004487 ENSRNOT00000006235 2 1 1 80 13 110512366 110512387 TACATTGTCATGGAGTACTGTG 58 110512422 110512703 CTCTAAGTATTGTCTATCCTTGGTC 59 NA Rattus norvegicus 81 LOC100909879 ENSRNOG00000032580 ENSRNOT00000048046 3 1 1 80 2 87418808 87418827 CAGAAAGGAACAGTAGAGCC 58 87418868 87419519 CATATCTGCTCCTGCATACAC 59 NA Rattus norvegicus 81 Hck ENSRNOG00000009331 ENSRNOT00000012432 1 1 1 80 3 148601698 148601721 TACCAAGAAAGAAGGCTATATCCC 60 148601760 148603254 CCCTTGAAGAACCACTCCT 59 NA Rattus norvegicus 81 Gpr158 ENSRNOG00000024832 ENSRNOT00000034098 2 1 1 80 17 88250525 88250544 CATTGACCAATGTTCGAGTG 58 88250585 88451160 TTGATTGGCATACACTCTGAG 58 NA Rattus norvegicus 81 Ptprz1 ENSRNOG00000006030 ENSRNOT00000008719 2 1 1 80 4 50109143 50111781 CACTGAAGAATTTGAGACACTG 58 50112018 50112040 CTGTCTGCTGTAATACCTAAGTC 59 NA Rattus norvegicus 81 LOC102550729 ENSRNOG00000046450 ENSRNOT00000070851 1 1 1 80 18 87637668 87637688 GATCCTTCACAGAAGAGTCTC 58 87637728 87637934 TTCCCAATTGTAGCCTATAGC 58 NA Rattus norvegicus 81 Spry2 ENSRNOG00000010058 ENSRNOT00000013342 3 1 1 183 15 90174611 90175647 TGCTGTTGGAGGAGTTCAG 60 90174446 90174464 AAGACATGTACCTGCTGGG 59 NA InUTR Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 1 1 1 60 1 53562976 53562994 CTTTGGGTGATGTGACTGC 59 53562778 53562956 TTCTGTACAGTATTTCCCTCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Prdm4 ENSRNOG00000004962 ENSRNOT00000006886 1 1 1 80 7 23976047 23976065 GTACCTCACAAGACATCCC 57 23976107 23976678 CAGGAACACCTATCTGTTGAG 58 NA Rattus norvegicus 81 Ctrb1 ENSRNOG00000019068 ENSRNOT00000026017 3 1 1 82 19 43906984 43907908 AAATACAATGCCCTCAAGACC 59 43906922 43906940 CAGGACTTCTTGCAGTCAG 58 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000085703,ENSRNOT00000091963 3 2 2 92 10 47801214 47810275 TTCATTTGGTACCAAGCCAG 59 47801141 47801159 CAAGGGTCTGAGTTCTTGG 58 NA Rattus norvegicus 81 Olr1635 ENSRNOG00000031108 ENSRNOT00000040096 2 1 1 60 15 27549340 27549361 GCAGTAATGGCTTATGATAGGT 58 27549301 27549322 TGATGACAGGGTAATGTAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692,ENSRNOT00000082967 1 2 2 80 X 71570258 71570278 GAATCATCCTACTTCACACCT 57 71570319 71570432 AAGGCATAGCAGAATACCTC 57 NA Rattus norvegicus 81 Orm1 ENSRNOG00000007886 ENSRNOT00000010454 1 1 1 80 5 79181467 79182634 CGACTGGACAAAGGATAAGTG 59 79182672 79182694 TTCTTGGTCTCCTTCTTAGTCTC 59 NA Rattus norvegicus 81 Fat3 ENSRNOG00000011585 ENSRNOT00000015977 2 1 1 80 8 14491983 14495445 CTACCACATTACAGGAGGGA 58 14491922 14491942 CTCTTCACATAGACCTTCCAC 58 NA Rattus norvegicus 81 Slc17a6 ENSRNOG00000016147 ENSRNOT00000022383 2 1 1 80 1 107035221 107035604 GCTATCTCTGGTTTCAATGTG 57 107035646 107035664 AACACCATTTGAAATGCCC 57 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000089339,ENSRNOT00000087088,ENSRNOT00000022292,ENSRNOT00000066004,ENSRNOT00000079954 3 6 7 81 2 186145307 186145328 GAAATACAGAATCGGGAAGGTC 59 186143821 186145265 CTCCTTTCCAGTGGACCTG 60 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 2 2 2 85 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177272 88226822 TTCTGGTATTTCCTCGGTCC 59 NA Rattus norvegicus 81 Pcdhb13 ENSRNOG00000020062 ENSRNOT00000027172 3 1 1 60 18 30517001 30517019 TATCCTCACTCAACAGCCC 59 30517039 30517061 CTGAATACTGCCACTATGATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC292543 ENSRNOG00000054438 ENSRNOT00000091279 2 1 1 80 1 64623096 64625594 TACTCAACTATGTCATTGGAGC 58 64625633 64625653 AGATATGGTTCCCTATGAGGC 59 NA Rattus norvegicus 81 Tsg101 ENSRNOG00000013381 ENSRNOT00000018194 2 1 1 94 1 102957805 102959543 CATGACTGGAAACACCCAC 59 102957729 102957747 GTAGGTCGGGAGAACACTG 60 NA Rattus norvegicus 81 Amigo1 ENSRNOG00000045665 ENSRNOT00000074725 1 1 1 60 2 210979091 210979110 CAACACAGCCTATACTACCC 58 210979131 210979151 GTATATGAGGACCAGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 2 2 2 87 1 84076216 84078101 ATGACAAGACCAAGGACCTG 60 84078151 84078169 GAGAATGCCTTGTCCAGGT 60 NA Rattus norvegicus 81 Oc90 ENSRNOG00000050531 ENSRNOT00000044610 1 1 1 80 7 106447456 106447475 AGTCTGGCATCAACTCTTCC 60 106447257 106447415 CCTTCCCACTAGTTGTCTCTG 60 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682,ENSRNOT00000057798 2 2 2 80 10 48335373 48335392 GAAGAAGACCTCAACTTCCG 58 48335433 48418277 GTTGTTGGAATAGTCCCTGTG 59 NA Rattus norvegicus 81 Etnk1 ENSRNOG00000014856 ENSRNOT00000020042 1 1 1 80 4 177436353 177441614 CAGTTTGCACTGGCTTCTC 60 177441658 177441676 GAAGTCGAACTCGATCGTG 59 NA Rattus norvegicus 81 LOC100294508 ENSRNOG00000012204 ENSRNOT00000016493 1 1 1 80 5 144864702 144865275 AACACAGTCACATGTCAGC 58 144865319 144865337 AAATGGGTCACAGACACAG 58 NA Rattus norvegicus 81 Morf4l2 ENSRNOG00000002389 ENSRNOT00000003247 3 1 1 83 X 107396026 107397118 GAAGGAACATTGTTGGTTGGA 59 107395963 107395981 GCAGATTGTTGTCCACGAG 59 NA InUTR Rattus norvegicus 81 Fam92b ENSRNOG00000021714 ENSRNOT00000035651 3 1 1 80 19 53745445 53746356 ATCTCCAGAGAATCTTCTCTGAC 59 53745387 53745406 AAGCACTGGAGTATACCTCC 59 NA Rattus norvegicus 81 Sft2d3 ENSRNOG00000016216 ENSRNOT00000021708 2 1 1 121 18 24692918 24692936 ACTCTACGCGTTGATAGGG 59 24692815 24692833 CAGATTGGGACTGTCACAC 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Ins1 ENSRNOG00000012052 ENSRNOT00000016052 3 1 1 172 1 272799819 272799956 GCAAGCAGGTCATTGTTCC 60 272800091 272800110 TGTAGAAGAAACCACGTTCC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Snrnp25 ENSRNOG00000020626 ENSRNOT00000027989 1 1 1 80 10 15687524 15688177 GAGAGGTAATGCCTGTGGT 59 15687462 15687480 TGAGCTGCACGTATCTCTG 60 NA Rattus norvegicus 81 LOC100363472 ENSRNOG00000000641 ENSRNOT00000000794 2 1 1 84 20 22738052 22743073 AAAGGCGACAGCCTATCTC 60 22745005 22745023 GCTATCCCTTTGCAGTTCC 59 NA Rattus norvegicus 81 Ifrd2 ENSRNOG00000016150 ENSRNOT00000022092 2 1 1 85 8 116346683 116346702 CCAGTGAAAGTGTGAACCTG 59 116346750 116347083 GAAGTCCTCCTCGAGATCC 59 NA Rattus norvegicus 81 Dnajb12 ENSRNOG00000030408 ENSRNOT00000044805 2 1 1 80 20 29455853 29457338 CTTTCAAAGCCATTGGCAC 58 29457382 29457400 TGTCATCACCAAACTGGTC 58 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458,ENSRNOT00000084860 1 2 2 80 2 244280912 244280930 AGAGGATGACCTTGCTGAG 59 244280341 244280871 AGTTTCTGCATGGATTCATCTC 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458,ENSRNOT00000084860 2 2 2 80 2 244280912 244280931 AAGAGGATGACCTTGCTGAG 60 244280342 244280872 GTTTCTGCATGGATTCATCTCC 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060250 2 1 10 80 15 32832040 32832060 TGATAGAGGTTCAGCTCTAGG 58 32832102 32852791 TCTGGGTCTGTGACATCAG 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000068094 1 1 10 80 15 32276990 32277177 AGATTTGCTGGGTGAGAGG 59 32277221 32277239 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Olr1243 ENSRNOG00000061259 ENSRNOT00000088227 3 1 1 60 4 1566842 1566861 ACAACATTGTCATGTCTCCT 57 1566882 1566902 CCCACCAAATATGAACCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim8 ENSRNOG00000019968 ENSRNOT00000027047 1 1 1 80 1 266268758 266268909 CCTAATGGACAGGACCCAG 59 266268952 266268971 AGGAAGAGCTTGGAGTTCAG 60 NA Rattus norvegicus 81 Olr1875 ENSRNOG00000021727 ENSRNOT00000033009 2 1 1 60 1 172877621 172877639 CAACCCTCTGCATTATCCA 57 172877579 172877597 GGCTATGATGAGCTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir344i ENSRNOG00000045909 ENSRNOT00000071136 1 1 1 60 1 122506604 122506622 CCAGCTCTAAGCTGGATCC 60 122506562 122506582 TTCTCTATTGAGCAGAGTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap12-2 ENSRNOG00000042956 ENSRNOT00000067800 2 1 1 104 20 11638334 11638382 CTATGTGCCTGCTGTATGC 59 11638248 11638266 AAAGAGGACTGGCATGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1443 ENSRNOG00000046777 ENSRNOT00000047914 2 1 1 60 10 44547632 44547651 GGACACTTTCCTCTTCACAG 58 44547674 44547692 GATGTTGCCTATGAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pick1 ENSRNOG00000011507 ENSRNOT00000016077 1 1 1 80 7 120465561 120466389 CATCGAGGAGGATAAATTAGGA 57 120466430 120466448 ATGCCAATCAGGTTCTGAG 58 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568,ENSRNOT00000090355 3 2 2 80 3 119376235 119376255 TATTACTGCCTCAATCGTTGC 59 119365161 119376194 TAGTCCATCACCTGGTAGCT 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000091945,ENSRNOT00000090039 2 4 6 80 20 3436300 3436795 GATGACCAGGATTACTTACACTC 59 3436242 3436260 CTCTGCTTCTCCAATCCGA 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000077092,ENSRNOT00000001098,ENSRNOT00000090039 3 4 6 80 20 3429878 3429898 AGTACTGGACATCTTAAGCCG 60 3428149 3429837 TTGTTGTGATTCACCTGGGA 60 NA Rattus norvegicus 81 LOC100362356 ENSRNOG00000030188 ENSRNOT00000040783 2 1 1 80 8 37126635 37126767 ATGGACATAGGAGAAAGAGTGG 59 37126277 37126295 GCATTCGAACCCATCATGG 59 NA Rattus norvegicus 81 Mn1 ENSRNOG00000027489 ENSRNOT00000029508 2 1 1 81 12 51214356 51246501 AACAAAGAAGTTCATGACCACC 60 51214296 51214314 AGTGGACAGTCAGACACTG 59 NA Rattus norvegicus 81 Lcn4 ENSRNOG00000030708 ENSRNOT00000046109 3 1 1 80 3 5169500 5169522 GACCACTACATCATATACACCGA 60 5169557 5170228 TTCTGGATACTTTCCTATGAGGTG 60 NA Rattus norvegicus 81 LOC100912642 ENSRNOG00000030466 ENSRNOT00000089521 1 1 1 80 5 119491575 119492113 CATAGGAGAAGAGAAAGGACAG 58 119491516 119491537 GTGATGGAGCAAATGATATTGG 58 NA Rattus norvegicus 81 Ankrd26 ENSRNOG00000006717 ENSRNOT00000073562 1 1 1 80 4 150590384 150594454 CGGACAGATAGAAGATGTGAC 58 150590324 150590342 GACTCCTCTAGCTTAGCCA 58 NA Rattus norvegicus 81 Ubxn2a ENSRNOG00000004950 ENSRNOT00000006668 1 1 1 80 6 28980257 28980281 GAAGTATGTATGTCTACAAAGCCTG 60 28978527 28980221 GATTCTTGGTGTAGCACTTCC 59 NA Rattus norvegicus 81 Ttll11 ENSRNOG00000019339 ENSRNOT00000032204 2 1 1 80 3 15278552 15278572 AGGAGTACAACTTCTACCCTC 58 15239693 15278510 CTTTCACCGTTTGGACCTG 59 NA Rattus norvegicus 81 Aatk ENSRNOG00000004392 ENSRNOT00000005839 2 1 1 80 10 109202348 109202368 GGATCTTCACTGTCATTGTCC 59 109199738 109202309 CATTCTCAAACTCCTTGAACCC 60 NA Rattus norvegicus 81 Atxn3 ENSRNOG00000005470 ENSRNOT00000007505 3 1 1 87 6 125845213 125845231 GGATGAAGAGGAGAGGCTG 59 125844926 125845164 CATATTTCCAGAAGGCTGCTG 60 NA Rattus norvegicus 81 Nudt16 ENSRNOG00000012962 ENSRNOT00000017318 1 1 1 122 8 113674699 113674717 CTTCTATGCCAAACGCCTG 59 113673881 113673899 TCACGCATGATGTACAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Cdhr4 ENSRNOG00000029586 ENSRNOT00000050702 3 1 1 80 8 116776572 116776591 GATCACAGTCAAGACTGGGA 59 116776634 116777547 TGTTGAGGACACCTCAACC 60 NA Rattus norvegicus 81 rno-mir-29b-2 ENSRNOG00000049256 ENSRNOT00000071880 1 1 1 64 1 38238383 38238401 AAGCTGGTTTCACATGGTG 59 38238428 38238447 CACTGATTTCAAATGGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept6 ENSRNOG00000043182 ENSRNOT00000067942 2 1 1 80 X 123547982 123554660 AATGGAACCATGAATGCCC 59 123547920 123547938 TCGCATCATCTTGTTCCCT 59 NA Rattus norvegicus 81 Plekhf1 ENSRNOG00000027724 ENSRNOT00000020383 2 1 1 60 1 94610559 94610577 GGTAACTCTGGAGCCACTG 60 94610517 94610535 TGTCTTGATCATCCAGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdhaf2 ENSRNOG00000020646 ENSRNOT00000028028 1 1 1 82 1 226566439 226566536 TTCTCCTGAGCCTCTTTGC 60 226566375 226566398 CTCATTAATCAGACGATCGTAGAG 59 NA Rattus norvegicus 81 AABR07054979.1 ENSRNOG00000052044 ENSRNOT00000089867 3 1 1 120 3 176151967 176151988 CTGCCGAGCATATTGATGC 60 176152072 176152090 TAATCCCTGAGATGCTGCC 59 NA Rattus norvegicus 81 Rn60_13_0873.1 ENSRNOG00000051337 ENSRNOT00000075901 1 1 1 60 13 82366339 82366358 ACCGATTACATGGCTTTCCT 60 82366298 82366319 TGAAGGTGAATCTTGAACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043200.1 ENSRNOG00000058276 ENSRNOT00000040473 3 1 1 82 19 26416970 26417453 ATCCATGAAGAACAGGCCA 59 26417498 26417517 GAATTGACATGACTGCCTCC 59 NA Rattus norvegicus 81 Cilp2 ENSRNOG00000020622 ENSRNOT00000027990 1 1 1 80 16 21291949 21292156 TCCTTGAAGAGTTAGGGAAGC 60 21292196 21292216 AGAAGGTCACATTCTGACCTG 60 NA Rattus norvegicus 81 Trim42 ENSRNOG00000048975 ENSRNOT00000071936 3 1 1 81 8 105220237 105222149 CCAAGTTCAAAGCAGTCCG 60 105220174 105220194 TTGTCAGCTTTGAAGCTACTC 59 NA Rattus norvegicus 81 Stk26 ENSRNOG00000007879 ENSRNOT00000010596 1 1 1 80 X 138089125 138089920 TGACTCTAAAGCTGACATATGG 58 138089961 138089979 TGCATGTCAGAATTCGGAG 58 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927,ENSRNOT00000023239 2 2 2 60 1 153734171 153734190 CCTCCCTATAGTCTTGCCTC 59 153734130 153734148 TTTGGCATCGAAGTCTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh16 ENSRNOG00000012222 ENSRNOT00000016419 3 1 1 80 19 574447 574545 CAGACTCCGGAAGAACCTC 60 574588 574607 ACCAGTTCCTCTACATTCCG 59 NA Rattus norvegicus 81 Trpt1 ENSRNOG00000023023 ENSRNOT00000031458 3 1 1 80 1 222253324 222253431 TCACTCCCTACAAGTCCCT 59 222253473 222253493 GTACCATGGACTAGTGTCGAG 60 NA Rattus norvegicus 81 Hyal6 ENSRNOG00000021695 ENSRNOT00000009435 1 1 1 80 4 52138268 52141002 TTCTGATACAAAGGAGACTTGC 59 52141039 52141061 GATGTTACATTGAGAGCATAGGG 59 NA Rattus norvegicus 81 Piwil2 ENSRNOG00000009871 ENSRNOT00000013284 3 1 1 80 15 52063107 52063125 TCATTTGTCACATCGGAGG 58 52061964 52063065 GAAATGCATGGGAATAGTCAG 57 NA Rattus norvegicus 81 Med17 ENSRNOG00000010496 ENSRNOT00000014435 2 1 1 80 8 13827958 13827979 TCAGATTAAGTCTCAGATCCCT 58 13827155 13827918 ATAGACAACTGCAAGCTTGG 59 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000067585 2 1 2 82 9 9935917 9935935 TAGTGGCTTCCCTACAGGA 59 9935753 9935871 CTCCTCAAGGATCTGGACC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000090445 3 1 8 103 3 100803309 100815570 TCATAAAGTTCCACCAGGTG 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA InUTR Rattus norvegicus 81 RGD1559731 ENSRNOG00000004265 ENSRNOT00000005659 1 1 1 80 X 4734788 4737954 ATCATCCTGCAGATCTTCCC 59 4737996 4738015 ACTGACCAGGAATCTACCAC 59 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 2 3 3 80 6 129631681 129632371 TAAGAAGCCTTAATGGTTGCAG 59 129632409 129632430 TCAGAGTTAACCTGAAGTTGTC 58 NA Rattus norvegicus 81 Sfn ENSRNOG00000033153 ENSRNOT00000043959 3 1 1 60 5 151824610 151824628 GAGAGCCAGTCTGATCCAG 59 151824568 151824586 CATGTCTTCGTAGCGTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsu1 ENSRNOG00000017595 ENSRNOT00000057827 1 1 1 80 17 80529476 80576910 TCTGGACAGTTGGAATTCAC 58 80529415 80529434 CTCAAGGTTCTTCAGCTCTG 58 NA Rattus norvegicus 81 Orai2 ENSRNOG00000001427 ENSRNOT00000001938 3 1 1 114 12 23553826 23553844 GAGGAAGCTGTACCTGAGC 60 23560990 23561008 CTGGTACTTGGTCTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Palldl1 ENSRNOG00000042312 ENSRNOT00000064850 3 1 1 100 16 31367860 31367879 TTCATCCAGAAGCTGAGGAG 59 31367942 31386868 CACAACGAACTGACTCTGG 59 NA Rattus norvegicus 81 LOC689396 ENSRNOG00000032418 ENSRNOT00000041429 2 1 1 108 X 151745543 151752813 CAATGGACAGATATGACTATGTGG 59 151752880 151752898 CCTGGGTCTATGTTGTCGG 60 NA InUTR Rattus norvegicus 81 Fam110c ENSRNOG00000005660 ENSRNOT00000007466 3 1 1 84 6 49969425 49969443 GTTTACCTGCAAGAAGGCC 59 49969490 49972654 AAGTTTGCTTCCTGGATCAG 58 NA InUTR Rattus norvegicus 81 Akip1 ENSRNOG00000013744 ENSRNOT00000018497 3 1 1 80 1 174331993 174332014 CCCTTAGTACTTCCTTCAGGAC 60 174332050 174334281 GTGTAGACAAGTAGTATTTCCCAC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000080961,ENSRNOT00000082956 1 2 5 60 9 81662969 81662987 AAGTCCTACACCTTTGCTC 57 81663011 81663029 CTTCCTGTCCCTTCATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316,ENSRNOT00000091595,ENSRNOT00000048306 2 3 3 143 11 84425646 84426262 GTGAACTGCAGAAGACTAGAG 58 84426367 84426385 CAACTGCGTGATCATCAGG 59 NA Rattus norvegicus 81 Pigo ENSRNOG00000009930 ENSRNOT00000013213 1 1 1 80 5 58467688 58467864 CACCTCTATCCTACCATGGAC 59 58467628 58467650 CTTATGACCACAATGATCCACAC 60 NA Rattus norvegicus 81 Kir3dl1 ENSRNOG00000027843 ENSRNOT00000039823 3 1 1 80 1 73308966 73314232 CTTCCTGCCAAAGATAACCT 58 73308905 73308923 GATGACGACGATGACAAGG 58 NA Rattus norvegicus 81 Htr1d ENSRNOG00000012038 ENSRNOT00000016046 2 1 1 60 5 154800388 154800407 TTCGTACTTACCACCATCCT 58 154800429 154800448 CAATGAGATAGTTGGCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1288 ENSRNOG00000057310 ENSRNOT00000085764 2 1 1 60 15 35685785 35685805 ATTCACGTACTTACATCCCTC 57 35685824 35685845 CACAGATGACAATTTCACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1096 ENSRNOG00000014386 ENSRNOT00000019271 1 1 1 64 4 1842185 1842206 CATACCCAAGATGGTATCAGAC 58 1842357 1842375 CTGCACAACCTTCAAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Tmem229a ENSRNOG00000039464 ENSRNOT00000060476 1 1 1 60 4 52349231 52349250 CGCTTAATTTCATGGGTCTC 57 52349190 52349209 ACACTAAGAAACAGCCAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr561 ENSRNOG00000033422 ENSRNOT00000042246 1 1 1 60 3 75438286 75438306 AGGATCTGTACCCTGTTAGTG 59 75438325 75438346 GTCCAATTACAACTGGTATGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap8 ENSRNOG00000033570 ENSRNOT00000017420 1 1 1 80 7 125758599 125758618 AGACGCATCTTCACTTTCAG 58 125757472 125758557 CTTCAGATACTCCAGCAGAC 58 NA Rattus norvegicus 81 AABR07065353.1 ENSRNOG00000037891 ENSRNOT00000057577 1 1 1 80 6 123362005 123362023 TAGAGCCTCACACTTGTGC 60 123362066 123376547 GAATAATCTTGGTGCTGGGC 59 NA Rattus norvegicus 81 H2afy2 ENSRNOG00000024751 ENSRNOT00000033529 1 1 1 80 20 31376839 31376858 CTTTCAAGTACCGGATCAGC 59 31372731 31376796 ACTCTAGGATTTCCGCTGC 60 NA Rattus norvegicus 81 Ndp ENSRNOG00000046042 ENSRNOT00000074275 2 1 1 81 X 6273887 6281568 AATGTAGCTCAAAGATGGTGC 59 6281611 6281629 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 2 2 2 80 10 47722340 47722358 TGATGCTCAGTTCGTACCA 59 47721611 47721929 GAACGAACATCTCTAGATAGCC 58 NA Rattus norvegicus 81 Fscn3 ENSRNOG00000007942 ENSRNOT00000063987 3 1 1 80 4 55722449 55723293 CCTCTCAGTCATCTATGATGC 58 55723332 55723353 TCACATTCATACTGGAACAAGG 59 NA Rattus norvegicus 81 Taf10 ENSRNOG00000019178 ENSRNOT00000025955 2 1 1 86 1 170585550 170585569 GATATTGCCAATGATGCCCT 59 170585318 170585501 GTACTTGCGATCCTTGCTC 59 NA Rattus norvegicus 81 LOC100365347 ENSRNOG00000043089 ENSRNOT00000065401 3 1 1 92 15 31167876 31167894 TTTCACTGGTGGTCCTGTG 60 31168498 31168516 CTCCCTCTGGAACAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 3 2 2 80 7 38919688 38924101 CCAATGAAGACTTTCCAACCT 59 38924143 38924161 TGGCATCAAGTTCATGGTC 58 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 2 2 2 80 15 4080049 4082267 CAGCTCAATGGATCACTTCC 59 4082310 4082328 CCATAGGAGAAGCCCTGAC 59 NA Rattus norvegicus 81 Olr696 ENSRNOG00000006433 ENSRNOT00000008419 2 1 1 60 3 78193366 78193385 ACCTACATTGTCACTGTCAC 58 78193325 78193344 TCTGGCTACAAACTATGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actrt2 ENSRNOG00000012586 ENSRNOT00000016781 3 1 1 60 5 172077777 172077797 GGGAATGTCATTTACATCGGA 58 172077737 172077755 CTGGTGAGAACAGGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565297 ENSRNOG00000001884 ENSRNOT00000002579 2 1 1 80 11 86894032 86894050 AAGGAGAAAGGGACCATCC 59 86894090 86896945 CATTGGTGTGATATAGTGGTTGG 60 NA Rattus norvegicus 81 Fbxo43 ENSRNOG00000010459 ENSRNOT00000014333 2 1 1 86 7 74925574 74925685 ATTTGAAGGTTGCCAGGAC 58 74925506 74925525 TATGCGGCTGATACTTAGCA 59 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 1 2 2 93 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690399 23690417 TGAACACCTCCATCTTCCC 59 NA Rattus norvegicus 81 Psmb2 ENSRNOG00000011463 ENSRNOT00000015618 3 1 1 80 5 144702087 144702106 GTCCTGACTATGTCCTGGTC 59 144702147 144708565 ACATCTTGTCATGATCGTCCT 59 NA Rattus norvegicus 81 LOC100361180 ENSRNOG00000048927 ENSRNOT00000013868 3 1 1 89 15 64190776 64190794 CTTCTGGACTTTGGCAGTC 59 64190606 64190723 TTAAACAGCTCCACGTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Fabp3 ENSRNOG00000012879 ENSRNOT00000017325 1 1 1 80 5 148528947 148532437 CATGAAGTCACTCGGTGTG 59 148532478 148532499 CCATTCTTCTCAATGATTGTGG 58 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000021768 1 1 2 95 18 79846427 79846445 CAGGGAGACTTTGTCTGTG 58 79846504 79848369 ACACTCAAACACCACTGTG 58 NA Rattus norvegicus 81 Rnf183 ENSRNOG00000014861 ENSRNOT00000019924 2 1 1 60 5 78284953 78284972 CTTTGCCTATCTGATGGCTG 59 78284912 78284933 AAAGATGGAGAAGATGAGAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814,ENSRNOT00000082412 3 2 2 80 1 264715595 264715619 GATTCCATTAGTAGACTTTCAGAGC 60 264715654 264717077 AGTTCATGAACCTTTGTGTTCC 60 NA Rattus norvegicus 81 Rhoa ENSRNOG00000050519 ENSRNOT00000071664 3 1 1 80 8 117106668 117106686 CAGAGGTTTATGTGCCCAC 59 117106728 117109587 ATAAAGCCAACTCTACCTGCT 59 NA Rattus norvegicus 81 Olr1625 ENSRNOG00000012491 ENSRNOT00000016643 2 1 1 60 15 26804495 26804519 GGCAACATCCTTATTATAGTCACAG 60 26804459 26804479 AGTACATGGGAGAATGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkci ENSRNOG00000009652 ENSRNOT00000012924 3 1 1 80 2 115952919 115954834 TACGGCATGTGTAAGGAAGG 60 115952858 115952878 CTCAGGAGCAATGTAATTGGG 59 NA Rattus norvegicus 81 Ap3d1 ENSRNOG00000018977 ENSRNOT00000025878 1 1 1 80 7 11857053 11857072 CTCTCACCAACCTCATTCAC 58 11857667 11858307 AGATGAGCACAGCAATCAC 58 NA Rattus norvegicus 81 Rpl23 ENSRNOG00000004107 ENSRNOT00000005471 2 1 1 80 10 85721518 85721625 GCGAGATGAAAGGTTCTGC 59 85721456 85721474 CTGCATTGGATGCAATCCT 59 NA Rattus norvegicus 81 Adar ENSRNOG00000020744 ENSRNOT00000028181 2 1 1 80 2 189077792 189078026 CACATCCAAAGACACTTCCTC 59 189078068 189078086 GAGCGTTGAAGCATCTGTG 60 NA Rattus norvegicus 81 Gng5 ENSRNOG00000015936 ENSRNOT00000021358 1 1 1 82 2 252363675 252363695 GTGTCTTCAAGTACAAATCCC 57 252363737 252367341 AGTAGTTTGAGAAACCTCGAG 58 NA InUTR Rattus norvegicus 81 Akr1c12l1 ENSRNOG00000050243 ENSRNOT00000064884 2 1 1 80 17 69590210 69591485 CCAGTGCCAATGAAGTCAG 59 69591528 69591547 ACAGAAATCCACAGTGTCCA 59 NA Rattus norvegicus 81 Mecr ENSRNOG00000028047 ENSRNOT00000034057 2 1 1 80 5 150014081 150016953 AATGCTGGTTTGGGAACCT 60 150016996 150017015 GAGAGGGATGTCCTTAGGGA 60 NA Rattus norvegicus 81 Mecr ENSRNOG00000028047 ENSRNOT00000034057 3 1 1 80 5 150014080 150016952 AAATGCTGGTTTGGGAACC 59 150016996 150017014 AGAGGGATGTCCTTAGGGA 59 NA Rattus norvegicus 81 Ndnf ENSRNOG00000006857 ENSRNOT00000009094 3 1 1 60 4 96563789 96563807 GTTTCTACGGTTTGCTCCA 58 96563828 96563849 ACAAGAGTGAATAAAGAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egfl7 ENSRNOG00000019388 ENSRNOT00000026318 2 1 1 80 3 4041851 4042024 CCAGATAGATGTTGATGAATGC 57 4042065 4042083 CACCAGTAACTTCCCACAG 58 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050740 ENSRNOT00000067263 3 1 1 62 15 30296309 30296424 GGGATAAACTTTCTCCTGAGAG 58 30296268 30296287 GACATGAGCATCAGGTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Trmt2a ENSRNOG00000001885 ENSRNOT00000046183 2 1 1 80 11 86888156 86888175 TTTGACACTGTGCACATTCC 59 86887955 86888113 CGAATATGGTGTGGAACGG 59 NA Rattus norvegicus 81 Trmt2a ENSRNOG00000001885 ENSRNOT00000046183 3 1 1 80 11 86887562 86887655 GAGGGACAGAGAAAGACTCC 59 86887501 86887519 CAGGTCTTCCTGAATGCAC 59 NA Rattus norvegicus 81 Olr1616 ENSRNOG00000053022 ENSRNOT00000087369 1 1 1 60 15 27267295 27267316 GGTTACTCCACTCATTAATCCC 58 27267333 27267355 GGCATGTTTCATATCTCTGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag6l ENSRNOG00000022021 ENSRNOT00000002513 1 1 1 80 17 85433452 85433470 CAGAACCGGGTTCTATCCT 59 85433508 85437711 GAGAATAATACCTCACTATCTCCTC 58 NA Rattus norvegicus 81 Nudt2 ENSRNOG00000013110 ENSRNOT00000017712 1 1 1 82 5 57845847 57857013 TGCTGCGGATAGATCATGG 60 57857059 57857077 GTTGTGTTGTCCACCTTGG 59 NA InUTR Rattus norvegicus 81 Cirh1a ENSRNOG00000020333 ENSRNOT00000027553 1 1 1 80 19 39100977 39101103 CCCTGATATCAGGAGGCAC 59 39101146 39101165 CGGCATCGTAGTTCTTTACC 59 NA Rattus norvegicus 81 Cachd1 ENSRNOG00000010514 ENSRNOT00000014354 2 1 1 80 5 119803733 119804402 AGGGCTCAAATTCTCTGTC 57 119804443 119804464 CTCATTTCCATTTGTGTCATCC 58 NA Rattus norvegicus 81 Trem1 ENSRNOG00000022859 ENSRNOT00000049193 1 1 1 80 9 14734325 14734343 GTCCACTGCTGTTGTTTCC 59 14728262 14734282 TTGTATGTGGAGACACTCGT 59 NA Rattus norvegicus 81 LOC683961 ENSRNOG00000048698 ENSRNOT00000073017 1 1 1 60 5 57658256 57658277 ATTCCGCCTGATTCTAATTGAG 59 57658293 57658316 CTTAGTCTTATAGTATCGAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042361.1 ENSRNOG00000052690 ENSRNOT00000072808 2 1 1 60 X 153678470 153678488 AGAAGCCTACAGAACTCCA 58 153678512 153678530 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 1 1 1 127 19 56311846 56311864 AGTCATCAGAGCAATTGGG 58 56306701 56311761 GTACCTTGACTTCTTTAGTGATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 2 2 2 80 4 55813977 55816073 ATGAGAGCCAATAACCCAGAG 60 55816114 55816133 ACTCCACATCCCTTTCTTCG 60 NA Rattus norvegicus 81 Calb2 ENSRNOG00000016977 ENSRNOT00000022943 2 1 1 80 19 41503553 41503910 TCAGAGATGTCTAGACTCTTGC 59 41504218 41504237 GAACTCTTCTGAGGTCAGCT 59 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000072110 2 1 3 144 2 144861597 144862510 GAACTCATAGAAGTTAATGGAACCC 60 144866043 144866061 AGTCCAAATCATCCGACGA 59 NA Rattus norvegicus 81 RGD1565911 ENSRNOG00000042840 ENSRNOT00000068178 1 1 1 60 5 87354479 87354500 GTACCTGAAACAGAAGAAACAC 58 87354520 87354539 CCCGACTTCTACTCTAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc23a3 ENSRNOG00000018266 ENSRNOT00000024667 2 1 1 81 9 82329028 82329046 GTTCTTTGCTGGCAGAACC 60 82328646 82328988 TCAATCCGTGTACCAGATATAGTG 60 NA Rattus norvegicus 81 Shh ENSRNOG00000006120 ENSRNOT00000008497 3 1 1 84 4 722215 727088 GGCTGATGACTCAGAGGTG 60 722149 722167 ACTCGAAGCTTCACTCCAG 59 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709,ENSRNOT00000057160 1 2 2 80 13 113709666 113709685 TCTGCTCCTTGAATCTAGCC 59 113709726 113709980 TGGAAAGTTCTGTGCTATTGG 59 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 3 2 2 108 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362990 81363009 ATTGAGTGAGACACAGAGGC 60 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 2 1 1 60 3 11587988 11588011 CTTGATCATCTTCACCTACTACAC 59 11588030 11589170 CTGGCTGTCAATGAATGGC 60 NA DesignNoJunction Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070,ENSRNOT00000009114,ENSRNOT00000078744 3 3 3 80 10 86388738 86388757 CATCAAATGGATGGCATTGG 58 86388800 86389062 ACAGTCACTCCATAGCTCC 59 NA Rattus norvegicus 81 Clmp ENSRNOG00000053239 ENSRNOT00000080288 2 1 1 80 8 44962862 44963799 AAGTGCTAGTGAGACCATCC 59 44963842 44963860 CACATTGTAGCGTCAGGTC 59 NA Rattus norvegicus 81 Tigd2 ENSRNOG00000038449 ENSRNOT00000058581 1 1 1 60 4 89537739 89537758 GCAATTTATGAGGCATCCAG 57 89537780 89537799 ACGCTCTGGTTATGGTACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf18 ENSRNOG00000026607 ENSRNOT00000039221 3 1 1 83 13 79378914 79384131 CTTCACTCAAGCCAACTGC 60 79386663 79386682 GTTCAGGAGCTGTCATTTGC 60 NA Rattus norvegicus 81 Zcchc17 ENSRNOG00000012266 ENSRNOT00000017156 1 1 1 81 5 148571362 148571381 TGAATTCAGGAAGGCCTGAG 60 148566561 148571319 TCTGTCACCATAGCAACCTC 60 NA Rattus norvegicus 81 LOC100911840 ENSRNOG00000019293 ENSRNOT00000026113 2 1 1 98 1 214018120 214024116 ACTTTGTTTCCAGAGACACC 58 214018041 214018059 AAGCAGAGGTTCCGTAGAG 59 NA InUTR Rattus norvegicus 81 Gbp4 ENSRNOG00000028768 ENSRNOT00000022648 2 1 1 80 2 248256296 248256314 CCATTGCTGTCTTCATGGA 58 248256358 248257728 ATTTCTCTATGGTGGCCAC 57 NA Rattus norvegicus 81 Wdr76 ENSRNOG00000022491 ENSRNOT00000036209 1 1 1 80 3 113468688 113471569 GTGTTTGAAGAGGTGTACAGG 59 113471611 113471629 CACTAGCAGAGTAGAGGCA 58 NA Rattus norvegicus 81 Cd177 ENSRNOG00000022669 ENSRNOT00000051619 3 1 1 80 1 82984098 82985297 GTCTTCAGTTAGGTCCGCA 59 82984036 82984055 TCAGGTGCAGATCAGATACG 59 NA Rattus norvegicus 81 AABR07017895.1 ENSRNOG00000049928 ENSRNOT00000071598 1 1 1 72 15 32324858 32324876 TACTCCTAGGCCTTCACCT 59 32325049 32325067 ATTTGTTTGACCTGCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000033897 3 1 8 80 6 127958484 127963480 TATCAAGTCCTACTAAAGAGCCC 59 127963516 127963538 TGGTATGAGGTCTTCTATGAAGG 59 NA Rattus norvegicus 81 Gltscr2 ENSRNOG00000013023 ENSRNOT00000017555 1 1 1 80 1 77840258 77840626 CTGGAACCCAAACAATCCT 58 77840196 77840215 ACACCTTTCTTCTTGGTCTG 58 NA Rattus norvegicus 81 Mogat3 ENSRNOG00000029211 ENSRNOT00000050456 3 1 1 80 12 22709732 22709751 CCACATTTACTCATGCTGCC 60 22709532 22709692 AGAAGAGACTAAACCACTGGTC 60 NA Rattus norvegicus 81 Fubp3 ENSRNOG00000009139 ENSRNOT00000021871 3 1 1 80 3 10254010 10254029 GGATACGGAGTACAGAAACG 58 10243190 10245491 TATTACTGCCCTTTGATGTACC 58 NA Rattus norvegicus 81 Creb3l3 ENSRNOG00000032202 ENSRNOT00000044484 3 1 1 80 7 11494411 11494431 AGAGGATGAGAAGAAGTTGCT 59 11494473 11495258 ACCCGTTCCTCATACTTGG 59 NA Rattus norvegicus 81 Pdgfra ENSRNOG00000002244 ENSRNOT00000003077 3 1 1 80 14 35544696 35544715 TTCCAAATACTCCGACATCC 57 35542206 35544653 GCTTCTGAGTCTAGCATGG 58 NA Rattus norvegicus 81 Mospd4 ENSRNOG00000003575 ENSRNOT00000004747 1 1 1 60 18 40451905 40451923 TCTTCCTGTTGTTCTGCTG 58 40451863 40451884 GAGTTTCCCTAGAAAGAATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnah6 ENSRNOG00000015581 ENSRNOT00000020894 1 1 1 80 4 101101457 101106368 AGAATTTCAAGGTGGAAGTGTC 59 101101398 101101416 CCCAGAGCAGTTGTTTGAG 59 NA Rattus norvegicus 81 Dnah6 ENSRNOG00000015581 ENSRNOT00000020894 2 1 1 80 4 100995331 100995352 ATTGCTCTTTACATCTGAAGGG 59 100993792 100995292 CCTGAAGTGATCTTTGAGTCC 59 NA Rattus norvegicus 81 Notum ENSRNOG00000036680 ENSRNOT00000054947 3 1 1 80 10 109837588 109837607 CTGTGACTCCAGATACAGCA 59 109837259 109837546 AGAATACCAGTACCTGTGCG 60 NA Rattus norvegicus 81 Accsl ENSRNOG00000042533 ENSRNOT00000068585 3 1 1 80 3 82764585 82766380 TGCTCCAGGACAAAGAGTG 60 82764523 82764542 TGACATAGCTGTAAGCCTCC 59 NA Rattus norvegicus 81 Olr869 ENSRNOG00000048408 ENSRNOT00000048274 3 1 1 60 5 137927491 137927513 GAGATGGTGGACTTTGTATTGAG 59 137927453 137927471 CCACAATGAGGGAGATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc27a5 ENSRNOG00000019626 ENSRNOT00000026575 3 1 1 80 1 65584702 65584721 GTTTGACATAGAGACGGCAG 59 65584764 65585973 AGAAGTCCTGGCTTTCCTG 59 NA Rattus norvegicus 81 Haus4 ENSRNOG00000039284 ENSRNOT00000016401 2 1 1 80 15 33182794 33183102 TCCTCAAGATGAGGATGGA 57 33182732 33182751 TAATGAGGCGATGTACTTCC 57 NA Rattus norvegicus 81 Ccdc71 ENSRNOG00000048718 ENSRNOT00000074493 1 1 1 60 8 117249910 117249931 GAACAGCTAAACCTCAGAAGTC 59 117249952 117249970 TCATCGTCTGAGCACTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krr1 ENSRNOG00000004035 ENSRNOT00000063917 3 1 1 80 7 54756258 54758810 GAGAACCAAGATGAGGGAGAG 60 54758851 54758870 TCTGGGATTGTCCTCTTTGG 60 NA Rattus norvegicus 81 Kcne3 ENSRNOG00000017054 ENSRNOT00000048437 2 1 1 84 1 165190032 165195858 GCAGAGTCAGATCACATTCC 59 165195905 165195923 TTGTACCAGGTCTCAGTCC 58 NA InUTR Rattus norvegicus 81 Aqp11 ENSRNOG00000013358 ENSRNOT00000018091 2 1 1 82 1 162703708 162705919 TTCTCTAGGCGTACTGCTG 59 162703644 162703664 CCTTCTTGTTACTCAGTTGGT 58 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 3 2 2 84 1 198089529 198091652 CAAGCAAACCCAGGAAGAG 59 198091700 198091718 GTTCTCTGTCTGCATTCGC 59 NA Rattus norvegicus 81 Htra1 ENSRNOG00000020533 ENSRNOT00000027860 1 1 1 80 1 201542414 201542898 ACGCCATCATCAATTATGGA 58 201544647 201544666 CCTTCAAGGTGTTAATCCCA 58 NA Rattus norvegicus 81 Ccdc88c ENSRNOG00000004482 ENSRNOT00000005908 3 1 1 80 6 125021088 125021107 TCAACAATGACGTCAACCTG 59 124981294 125021047 GGAGAACTTCCTGGTAGTAGG 59 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 3 2 2 81 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384457 148384562 TCATGATCTCCTTCTCATCGG 59 NA Rattus norvegicus 81 Tlr6 ENSRNOG00000002161 ENSRNOT00000002933 1 1 1 84 14 45039977 45039997 AACATTCCCAGTAGATACCAC 57 45040040 45042083 AGTTCTTTCCCTTCTCAATAGG 58 NA Rattus norvegicus 81 Olr670 ENSRNOG00000046773 ENSRNOT00000050849 2 1 1 60 3 77696183 77696202 GCTTTACCTTGCAACAATCG 58 77696142 77696160 AGGGTTCCAAACAATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012,ENSRNOT00000008003 3 2 2 80 4 161688873 161690722 ATCGGGTTAAGGTTGAGGC 60 161690765 161690784 TATAGGAGTAGGGTGGCCTC 60 NA Rattus norvegicus 81 Skida1 ENSRNOG00000033330 ENSRNOT00000040697 1 1 1 80 17 84828972 84828990 TCCAGTTTGTCAGCTCCAG 60 84828908 84828928 CTTCCTCCCTTTCCTCCTC 59 NA Rattus norvegicus 81 LOC100361079 ENSRNOG00000002340 ENSRNOT00000003180 2 1 1 60 1 89258624 89258726 CAAGTTTATCAAGAAGAGGGTGG 60 89258586 89258604 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Zfp687 ENSRNOG00000021026 ENSRNOT00000028553 3 1 1 81 2 196174550 196174570 GTTTAAGTGCCCATCTTGTCC 60 196174336 196174512 TCCAGACTGATGAGTATTCTTGAG 60 NA Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000001036 1 1 2 82 20 3176222 3176431 CCAGACTAGCTCACACTCG 60 3176477 3176495 CAACGACAATGAACCTGGG 59 NA Rattus norvegicus 81 Myh7 ENSRNOG00000016983 ENSRNOT00000024186 3 1 1 80 15 33655253 33655473 GGATGATCTACACCTACTCAGG 59 33655194 33655212 CCACTTCCGCATTGTACAC 59 NA Rattus norvegicus 81 Psmb11 ENSRNOG00000047091 ENSRNOT00000073767 2 1 1 60 15 33271209 33271228 TGATACTCGTTCCTCCTGTG 59 33271251 33271269 AGGGATGACCTTTCGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem175 ENSRNOG00000000044 ENSRNOT00000000050 3 1 1 80 14 2090981 2091001 ACTAGGATTGCTGTCTACCTC 59 2088729 2090940 AACAACCTGGAACAATCTGG 58 NA Rattus norvegicus 81 Mon1a ENSRNOG00000018502 ENSRNOT00000024966 1 1 1 81 8 116679457 116679475 CTATGGGTGTCATGGTTGC 59 116679520 116680261 TTGTAGCCATCTGCATGGA 59 NA Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 2 2 2 80 8 59602957 59604883 TGTGGCTGAAGCAAATCTG 59 59602895 59602913 GAACACGCATGAACTCCAC 60 NA Rattus norvegicus 81 Atp5i ENSRNOG00000000064 ENSRNOT00000000072 1 1 1 80 14 2325888 2325906 AGAAGAATAGCAGCGGAGG 59 2325950 2326363 GACATCTTCAGCTTCTGCC 59 NA Rattus norvegicus 81 Rad51d ENSRNOG00000021780 ENSRNOT00000038376 2 1 1 81 10 70240455 70240479 CTTAAATGGTGCAGATCTCTATGAG 60 70234580 70240416 TAGTTTGTCCAGGCTTCCG 60 NA Rattus norvegicus 81 Lin7c ENSRNOG00000045698 ENSRNOT00000073258 2 1 1 80 3 101017449 101018090 AATGGAGTGAGTGTTGAAGG 58 101018133 101018151 GACTAACTTCACCTTGCCT 57 NA Rattus norvegicus 81 Cenpc ENSRNOG00000021776 ENSRNOT00000031074 2 1 1 80 14 23647508 23647529 CATAGAAGCAAGACACAAATGG 58 23647570 23648794 GGAAGGTCCACTTTCTTCC 58 NA Rattus norvegicus 81 Rn60_10_0627.1 ENSRNOG00000011753 ENSRNOT00000015673 1 1 1 60 10 62967684 62967702 TCTGTGTATGCTCCCTTCC 59 62967642 62967663 TTTCAACCAAAGACCCATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350,ENSRNOT00000072663 3 2 2 80 3 148426053 148427537 CTTGGAAACTTCATTGATGCC 58 148425993 148426012 TGATTCGTGGATAGAGACGA 58 NA Rattus norvegicus 81 Pirt ENSRNOG00000037852 ENSRNOT00000057503 2 1 1 145 10 53466894 53466912 AAACTCATTGCCAGCTTCC 59 53481265 53481283 ACCTCTCGTCTACCTCCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gstt1 ENSRNOG00000049771 ENSRNOT00000001669 3 1 1 80 20 13805992 13806010 CGTGTGGATGAGTACCTGG 60 13806052 13813874 GAACATCACCTTATGCCACAG 59 NA Rattus norvegicus 81 Prrt2 ENSRNOG00000029366 ENSRNOT00000049044 3 1 1 88 1 198452719 198452737 CCAAGCTCTTAAGCATCGT 58 198452499 198452667 CCCTCACTTATACACGCCT 59 NA InUTR Rattus norvegicus 81 Pabpn1l ENSRNOG00000029558 ENSRNOT00000045052 1 1 1 80 19 55433574 55433593 CAGTGTACAGAGAAAGGCCA 60 55433232 55433532 AAGAAGCAGCCTATGGTCTC 60 NA Rattus norvegicus 81 Usp18 ENSRNOG00000037198 ENSRNOT00000056174 3 1 1 80 4 153819537 153819555 TGCCACTCAGTGTACTTCC 59 153819593 153832230 TTCATAGTGTATCTCAGACTGATCC 60 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000049182 ENSRNOT00000072418 3 1 1 92 15 30802334 30802447 CTTTCTTCTGAGAGTTGCCC 59 30802502 30802520 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 LOC100912374 ENSRNOG00000048206 ENSRNOT00000074807 2 1 1 60 5 69215115 69215135 CACACCCATGTACTTCTTCCT 60 69215154 69215175 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308117 ENSRNOG00000008351 ENSRNOT00000011277 2 1 1 80 15 51837354 51837373 GTAGGAGAACAGGAGTCCAC 59 51836933 51837311 CTCCATACTACCCACCTCC 58 NA Rattus norvegicus 81 Enox2 ENSRNOG00000030622 ENSRNOT00000048498 2 1 1 80 X 136061121 136071911 TTTACCTGAATTTGATCCCGC 59 136061061 136061079 ACTATTCCCAAACCAGGCA 59 NA Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000078180 1 1 2 119 15 28733452 28733470 TTGTGTCCTAACCCATCCC 59 28732975 28733369 CTCACTAGCATCACCTCCG 60 NA InUTR Rattus norvegicus 81 Hp ENSRNOG00000014964 ENSRNOT00000020197 3 1 1 80 19 42098365 42098383 GCTATGTGGAACACTTGGT 58 42098424 42099064 TTAAGGTGTAGATTCCATCTCC 57 NA Rattus norvegicus 81 Dok5 ENSRNOG00000013196 ENSRNOT00000017654 2 1 1 80 3 168411714 168438217 GGTGTTACCACAAGGTTACAG 59 168438255 168438277 CTATAGCATGTTTCTTGGTGCTC 60 NA Rattus norvegicus 81 Iqck ENSRNOG00000036758 ENSRNOT00000055096 3 1 1 90 1 188594192 188594213 TTTATCTTTCCAGTTCTGCTCC 59 188594261 188619910 TGAATTTGGTTCTCTTCCTCTC 58 NA Rattus norvegicus 81 RT1-Ha ENSRNOG00000026669 ENSRNOT00000086964 2 1 1 175 20 3880737 3880847 TCACTGGGAAATGCAGGAG 60 3880985 3881004 CCTCCACAGTTACTCACAGG 60 NA Rattus norvegicus 81 Sema3d ENSRNOG00000007202 ENSRNOT00000009489 2 1 1 80 4 19232711 19232731 ATACCTAAATCCCAACAAGCC 58 19226835 19232670 ATCGGGTTTCAACTCTTCTC 58 NA Rattus norvegicus 81 Vom1r6 ENSRNOG00000052154 ENSRNOT00000079924 3 1 1 60 1 60045597 60045618 GCTATACTTTATGGACACAGGA 58 60045638 60045657 TGAAGGAGGTATGAGAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dis3 ENSRNOG00000009125 ENSRNOT00000037588 2 1 1 80 15 83493144 83493162 AGCGAATCAGGGATGTGAC 60 83491249 83493106 CTATGTAGGTTTCTTTATGGTGCTC 60 NA Rattus norvegicus 81 LOC687110 ENSRNOG00000031645 ENSRNOT00000042026 1 1 1 60 3 78279089 78279109 CCAATGTACTTCTTCCTTGCC 59 78279049 78279069 AGAAGGCAGTGGAATAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 1 2 2 80 2 256692087 256692106 CAATTAGCTCAAACCCACCC 59 256692144 256693867 GCTTATCTGAGAGCTTTACATGAC 60 NA Rattus norvegicus 81 Znhit3 ENSRNOG00000027818 ENSRNOT00000039481 2 1 1 80 10 72234091 72235636 AGAAGCACAAAGAGCAGTG 58 72234029 72234047 TTTCCTCAGTCCTTACGGG 59 NA Rattus norvegicus 81 Myl10 ENSRNOG00000028981 ENSRNOT00000041654 2 1 1 109 12 23012206 23014536 CAAGGCTGACTTCATTAAGGA 58 23011989 23012007 CTAAGTTGCCACAGACGTC 59 NA Rattus norvegicus 81 Hs3st2 ENSRNOG00000017659 ENSRNOT00000023773 1 1 1 100 1 191345811 191345829 AGTTTATCCGAGTGCACCC 60 191345893 191472796 CATCAGGCTCCTGTACCAG 60 NA Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 2 2 2 82 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819205 109819224 GCTGCTTCTCATTCTTCAGC 60 NA Rattus norvegicus 81 Olr115 ENSRNOG00000046188 ENSRNOT00000040224 1 1 1 60 1 168724892 168724911 TCCTTGTCTCCTATACGCCT 60 168724851 168724870 ACCTTCTTTCCAATTCGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp287 ENSRNOG00000003215 ENSRNOT00000004291 3 1 1 80 10 49145705 49145726 GATTCCCATCTTAGAAGAGCCA 60 49136838 49145667 TGAGCTTTAGTTTCCCATTCTG 59 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421,ENSRNOT00000085708 2 2 2 80 6 23272446 23272465 ATCGCAGCACATAACTTGTG 59 23270466 23272406 TTTGTCATTCCTAAATGCAGGG 59 NA Rattus norvegicus 81 Rpl7a ENSRNOG00000047737 ENSRNOT00000044551 2 1 1 88 3 5460962 5460980 TCATCAAGGGAAAGGCCAG 60 5461031 5461263 CTTGTCTTCCGAGTTCACCT 60 NA Rattus norvegicus 81 AABR07060995.1 ENSRNOG00000053275 ENSRNOT00000071605 2 1 1 60 4 102403690 102403708 CAGTAGAGTGAGGGCTGAG 59 102403731 102403750 AGGATACTCTCGAACTTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpc1 ENSRNOG00000049437 ENSRNOT00000074395 3 1 1 85 9 100023097 100023116 ATTGGCAGTGTGCATATGTG 59 100023164 100023306 CCCTGGATGACCTTAGCTG 60 NA Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857,ENSRNOT00000019568 3 2 2 80 1 141667676 141668750 CTCATGTCATCTTTCAAGGTGG 59 141667617 141667638 CTTATTTACCAGGCCCTTTAGC 59 NA Rattus norvegicus 81 Wdr6 ENSRNOG00000020185 ENSRNOT00000027411 2 1 1 80 8 117360186 117360204 GGCTAGATGAGTACTGGGA 58 117360010 117360143 CAAGAGACATGTACCTGGTC 58 NA Rattus norvegicus 81 Olr1596 ENSRNOG00000057400 ENSRNOT00000089352 2 1 1 60 13 92250510 92250528 TGCTCTTCTTTGGTAGCGT 59 92250552 92250570 AACAAGGAGTAGGTAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910867 ENSRNOG00000006114 ENSRNOT00000009264 3 1 1 80 4 25581640 25581660 TAGAGGAGTACATGTCATGCC 59 25581700 25584732 TGAAGTAGGAATCCTCATGCC 60 NA Rattus norvegicus 81 Ccdc116 ENSRNOG00000001860 ENSRNOT00000041557 3 1 1 81 11 88096920 88096938 CATGAGGGACAAACTCCTG 58 88096981 88097105 GTGTTGATTCAGAACTTTCCC 58 NA Rattus norvegicus 81 Clhc1 ENSRNOG00000004456 ENSRNOT00000006085 3 1 1 80 14 113994196 113994216 TTGGAGGGAATCAAATGTGGA 60 113994258 113996528 AAATGTCAGCTTTGCCTGG 59 NA Rattus norvegicus 81 Fam43b ENSRNOG00000043113 ENSRNOT00000068065 1 1 1 145 5 156811442 156811460 AGCTTAACAAGGAGGACCC 59 156811315 156811333 CAGTTTCATCTTCGTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsc22d3 ENSRNOG00000056135 ENSRNOT00000085118 1 1 1 81 X 111887633 111887652 GCACAATTTCTCCATCTCCT 58 111886885 111887589 TCCAGAGGCACTGTTATCC 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911,ENSRNOT00000074245 2 2 2 96 7 118714540 118715069 GTTTGTCCAGGGAAGAGGA 59 118715128 118715147 GGGTCACTTTGGAGTTTGTC 59 NA Rattus norvegicus 81 Abca17 ENSRNOG00000039656 ENSRNOT00000060818 1 1 1 80 10 13703661 13703680 TTACCCTCCCAATCTAAGCC 59 13698965 13703621 AAGCCTTCTTTGTTGTATCCAG 59 NA Rattus norvegicus 81 Srpx ENSRNOG00000039666 ENSRNOT00000045753 1 1 1 80 X 14158402 14159052 AGTAAGAGTCAGACGTTGTGG 60 14158342 14158362 CCATAATTGTCACCATCGCTG 60 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 2 4 4 81 1 250692825 250693532 CAATCAGCAAGTGCTGAAGG 60 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 AABR07017875.1 ENSRNOG00000052759 ENSRNOT00000072888 3 1 1 97 15 32160405 32160615 GTTTAATTGGGTGAGCAGCC 60 32160673 32160693 CACTGAATGTGCAGTTGAGAG 60 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 1 1 3 60 X 70567203 70567365 AGAGGTCCCAAGATTCTGC 59 70567386 70567407 TCAGGTAGATAACCAGAGTGAC 59 NA DesignNoJunction Rattus norvegicus 81 Mlst8 ENSRNOG00000009667 ENSRNOT00000014269 3 1 1 83 10 13843817 13843996 AGGACTCTCAGGTGAATGC 59 13843670 13843690 CATACATGCGGATATGTTGGT 59 NA Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046144 ENSRNOT00000072019 3 1 1 155 17 43616408 43616426 CTACCAGAAGTCCACCGAG 59 43616545 43616563 TCAAACAGACCCACAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yy1 ENSRNOG00000004339 ENSRNOT00000005743 3 1 1 84 6 132717672 132717690 AAGAAACTCCCTCCTGGAG 58 132717738 132724268 TTCTTGGCTTCATTCTGGC 59 NA Rattus norvegicus 81 Scfd2 ENSRNOG00000026828 ENSRNOT00000038506 2 1 1 81 14 36498015 36516094 ATAGTACCCATCAGGCAGC 59 36516139 36516157 ATGGGATCTGGCTTCTCAG 59 NA Rattus norvegicus 81 Cnpy2 ENSRNOG00000003549 ENSRNOT00000004895 1 1 1 80 7 2738986 2741273 AGTCAGTTGTGGAGGTTCC 59 2741314 2741335 CCTTCATTCGGTCACATATCTC 59 NA Rattus norvegicus 81 Ppp3ca ENSRNOG00000009882 ENSRNOT00000047975 1 1 1 80 2 242181015 242184114 CTGATGAAGCCATCAAAGGA 58 242184156 242184175 CGTTAATTCGGTCTAAGCCC 59 NA Rattus norvegicus 81 RGD1561916 ENSRNOG00000013320 ENSRNOT00000017903 3 1 1 80 5 57890524 57890547 CACCTATAAGAGTTCCATTTCAGG 59 57887303 57890488 CAGCATTTGTCCTCTTCATCTG 60 NA Rattus norvegicus 81 Vom1r32 ENSRNOG00000048505 ENSRNOT00000044754 3 1 1 60 1 71844719 71844739 CTTGTTCCTGTTCATAGAGGT 58 71844761 71844779 ACTTTGCCAAATCTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612,ENSRNOT00000081992 3 2 2 80 9 98645447 98645467 TACTAGCCAAGATAAGCTGGA 58 98645509 98645928 CGAGGTATTCTTCTGAGGC 57 NA Rattus norvegicus 81 Trim50 ENSRNOG00000022483 ENSRNOT00000032250 1 1 1 80 12 24353098 24358499 CGGATTATTAATGAGTCTGACGTC 60 24353041 24353059 CTCTTCATCCACCAGGTGG 60 NA Rattus norvegicus 81 Txndc8 ENSRNOG00000029073 ENSRNOT00000042788 1 1 1 84 5 75114554 75114572 GGAAATAGGCTTGTGGTGG 59 75106923 75114506 AAGACATTGCCTGGAAAGC 59 NA Rattus norvegicus 81 Rnf165 ENSRNOG00000048824 ENSRNOT00000075580 1 1 1 80 18 73832564 73837268 ACAAGTATAAGAAGCGAAGACC 58 73832505 73832525 TGCATTTCTCATCTGTGTCTG 59 NA Rattus norvegicus 81 Fkbp6 ENSRNOG00000001451 ENSRNOT00000001971 1 1 1 80 12 24369222 24369241 ACATGGATAAGCCTTTCGAC 58 24369281 24370944 CCCAGAGTGTAATATCTTCTCC 58 NA Rattus norvegicus 81 Tspan11 ENSRNOG00000054360 ENSRNOT00000087834 2 1 1 80 4 160495383 160495401 CTTGTCATGACAACTGGCT 58 160495443 160510243 CAGGCAGAAATATGTGGAGAG 59 NA Rattus norvegicus 81 Wbscr27 ENSRNOG00000046700 ENSRNOT00000074851 2 1 1 86 12 24772557 24774486 TACCCTAAAGGGACCTTTGAC 59 24772491 24772509 TAGGAGCTCAGGTATGGCA 60 NA Rattus norvegicus 81 Mir218-2 ENSRNOG00000035481 ENSRNOT00000053604 3 1 1 60 10 20428680 20428701 TTCCTTTGTGCTTGATCTAACC 59 20428722 20428740 TTGACAGAACCATGTTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgdia ENSRNOG00000036688 ENSRNOT00000054957 1 1 1 80 10 109755629 109755649 CTGGAGAGCTTCAAGAAACAG 59 109755490 109755587 TCTGTTCACCCGGAAAGAG 59 NA Rattus norvegicus 81 Mir142 ENSRNOG00000035633 ENSRNOT00000053756 2 1 1 60 10 75050848 75050869 GTCACCCATAAAGTAGAAAGCA 59 75050885 75050908 TAAAGTAGGAAACACTACACCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmod ENSRNOG00000003183 ENSRNOT00000004382 2 1 1 93 13 50878513 50883605 GATCAATGAGTTCTCCATCAGC 59 50883659 50883677 GATCTCGTTCCCATCCAGG 60 NA Rattus norvegicus 81 Hopx ENSRNOG00000024689 ENSRNOT00000049774 2 1 1 89 14 33355095 33355113 AACAAGGTCAACAAGCACC 59 33355166 33361766 AAACCATTTCTGCGTCTGC 60 NA Rattus norvegicus 81 Olr1283 ENSRNOG00000057810 ENSRNOT00000083638 3 1 1 60 15 35814220 35814239 TGCTGTCTTCTTTGGATCAC 58 35814260 35814280 CATGGAACTGACTGATGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912008 ENSRNOG00000005247 ENSRNOT00000061242 2 1 1 80 3 4870515 4870533 ATCCTGGTCAATAGAGGGT 57 4870364 4870471 TACTTCTCCCAGAACCTGG 58 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179,ENSRNOT00000085126 3 2 2 80 15 3477690 3477708 ACTACAACTCCCATCAAGC 57 3473843 3477647 CTCGTCAAATACCTCTTCCC 58 NA Rattus norvegicus 81 Pars2 ENSRNOG00000007327 ENSRNOT00000057471 2 1 1 190 5 126254173 126255962 TATAGAGTGCTGCTGGTGC 60 126256114 126256134 CATGATACCCTGGTACATGGA 59 NA InUTR Rattus norvegicus 81 4931400O07Rik ENSRNOG00000026227 ENSRNOT00000032522 1 1 1 89 X 145558942 145558961 AATAAGGGAGGACGAGACAC 59 145559007 145559200 CACTTTCCAGACCTTCTTATTTCTC 60 NA Rattus norvegicus 81 Dpep1 ENSRNOG00000015880 ENSRNOT00000021397 2 1 1 80 19 55997374 55997392 CTGGACCACATCAAGAAGG 58 55997435 55997636 CACAGGAAGGTTGGTAACAC 59 NA Rattus norvegicus 81 Olr848 ENSRNOG00000049790 ENSRNOT00000039903 2 1 1 60 5 68619369 68619389 CACACCCATGTACTTCTTCCT 60 68619408 68619429 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504 1 1 2 60 7 144064990 144065646 GGGAAGGATTGAACTAACTTGTG 60 144065666 144066024 GGATATGGATTTGGCCCAG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 AABR07000595.1 ENSRNOG00000030796 ENSRNOT00000045386 2 1 1 115 1 19521617 19521635 GAATCTCCGTGTCCATGTG 58 19521222 19521446 TGACAGGGTCATTCTCTGAC 59 NA Rattus norvegicus 81 AABR07000595.1 ENSRNOG00000030796 ENSRNOT00000045386 3 1 1 117 1 19521621 19521640 GATCTGAATCTCCGTGTCCA 59 19521225 19521448 CAGGGTCATTCTCTGACGG 60 NA Rattus norvegicus 81 Rexo1 ENSRNOG00000017916 ENSRNOT00000024080 2 1 1 80 7 12040779 12040874 TCATCCAAGACAATGTGGAC 58 12040917 12040935 CTCGGATCTTCCAGATGAC 57 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 3 2 2 82 9 100286258 100286276 CTCTGGCTCTCAGAAGGTC 59 100286320 100287258 AGTAGACTTTGGATTTGGCCT 60 NA Rattus norvegicus 81 Mroh7 ENSRNOG00000058870 ENSRNOT00000089934 3 1 1 82 5 126308934 126308952 TCCTGATGAAGAGATCGGC 59 126305672 126308888 TCTTGGTCCGTTTCTGGAG 59 NA Rattus norvegicus 81 AC115670.1 ENSRNOG00000059342 ENSRNOT00000083706 1 1 1 60 17 45726543 45726564 GTTGAAATGTCTGTCTTTGCTC 59 45726504 45726526 GAATAAGGATGAGAGGTGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 1 2 2 80 18 2081781 2081800 GTTCTTTGTGTTCTCCTCGT 58 2081841 2083608 CACATTCTTCAATCTTCGTCC 57 NA Rattus norvegicus 81 Mir22 ENSRNOG00000035620 ENSRNOT00000053743 1 1 1 60 10 62299608 62299627 GTAGTTCTTCAGTGGCAAGC 59 62299650 62299668 CAGTTCTTCAACTGGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 1 1 1 64 1 81751526 81751806 AGTCTGGGAAGCTGAAAGTC 60 81751832 81751851 AAGCTCTTTATGTTTGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 2 1 1 65 1 81751526 81751806 AGTCTGGGAAGCTGAAAGTC 60 81751833 81751852 CAAGCTCTTTATGTTTGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528,ENSRNOT00000046854,ENSRNOT00000087320 1 3 3 82 13 51035577 51037791 CAGGAGATCACAGAAGCCC 60 51037837 51037855 TTGACAGACTCTCCCACCT 60 NA Rattus norvegicus 81 Zfp46 ENSRNOG00000049975 ENSRNOT00000072132 3 1 1 60 5 154651774 154651792 GCAGCTCTCATCTCATCAC 58 154651815 154651834 GTACACTCGTAGGGCTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003171.1 ENSRNOG00000027102 ENSRNOT00000030895 2 1 1 82 1 97780149 97780170 GTCCAAATACCACTCTTTACCT 58 97780213 97781426 GTCTCCATTTGAACCACGG 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330,ENSRNOT00000064780,ENSRNOT00000077402 3 3 3 80 X 142059264 142059284 ATCATGAAAGGCAACCATGTC 59 142055086 142059224 CTTGTACATGGCCACTTTCAG 60 NA Rattus norvegicus 81 Rab26 ENSRNOG00000042086 ENSRNOT00000004249 1 1 1 80 10 13894845 13894964 TTTACAGCCATAGCAAAGGAG 58 13894785 13894803 CACATAGTCATGCAGCCTG 59 NA Rattus norvegicus 81 Pax3 ENSRNOG00000013670 ENSRNOT00000018652 3 1 1 80 9 84035275 84035296 CCACTATCCAGACATTTACACC 59 84025238 84035234 CTAAACCAGACCTGCACTC 58 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 2 2 2 80 3 113320574 113320763 ACCTATGAGGTATTTGCCGA 59 113320804 113320824 GTGCTTCATTGTTCTAGGGTC 59 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 3 2 2 80 3 113321839 113321857 TCTCTATGGAGAAAGGCGG 59 113321901 113323458 GGATCAGCTTCTCCACCTC 60 NA Rattus norvegicus 81 Serping1 ENSRNOG00000007457 ENSRNOT00000009817 1 1 1 80 3 72163788 72163806 ACTTACGTGATGATGCCTC 57 72161708 72163747 GTCAAAGAATTCCAGTTTCTCC 58 NA Rattus norvegicus 81 Fgf7 ENSRNOG00000009425 ENSRNOT00000012700 3 1 1 82 3 118318144 118365594 GAACAGCTACAACATCATGGA 59 118365633 118365656 CAAGATAGTATTCACTTTCCACCC 59 NA Rattus norvegicus 81 Scn2b ENSRNOG00000016221 ENSRNOT00000021819 3 1 1 81 8 49426292 49426311 CTATACCGTGAACCACAAGC 59 49426354 49426604 CTGGAGGAACATCTCCTCTG 59 NA Rattus norvegicus 81 Smarca1 ENSRNOG00000003762 ENSRNOT00000068478 2 1 1 80 X 134667694 134667713 AGATTGATGGAGCAGAACCT 59 134665325 134667653 TCCAGTTTGTGAAACCTTGTG 59 NA Rattus norvegicus 81 Fam188b ENSRNOG00000011530 ENSRNOT00000015469 2 1 1 80 4 85523381 85523921 TACGGCTGACTGTTGATACC 60 85523962 85523982 TGATACAGAGCTCAAGAGGAG 59 NA Rattus norvegicus 81 Fkbp7 ENSRNOG00000011758 ENSRNOT00000015722 1 1 1 80 3 63522813 63527013 CTCCAAGGCCGAGATAGAG 59 63522751 63522772 GCCTTCTGATATGACTTGTCAC 59 NA Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046434 ENSRNOT00000073188 3 1 1 87 17 43814938 43814956 TCAGGACTTCAAGACCGAC 59 43814869 43814888 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hax1 ENSRNOG00000045647 ENSRNOT00000076846 3 1 1 100 2 189333248 189333272 CAGAGTTTCAAAGTTTCTAGTACCC 60 189332687 189333190 AAAGGATCTCTGTGGCTCC 59 NA Rattus norvegicus 81 Olr1261 ENSRNOG00000049172 ENSRNOT00000075772 1 1 1 60 3 158887414 158887436 GGTTCTAGCAAATGGTTCTACTG 60 158887456 158887474 AGGCTGGTCTGTTAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 3 2 2 80 7 142324889 142324910 TTAGGAACTGTCAGTTCATTGG 58 142323884 142324848 TGATGAGTTGATCCTGGGT 58 NA Rattus norvegicus 81 Vom1r66 ENSRNOG00000051995 ENSRNOT00000090182 2 1 1 60 4 87516457 87516477 TTATATTAGCAGGGTGACGAG 57 87516498 87516517 GAATACACTGAGGAGACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 3 2 2 80 9 85566394 85566412 TCACATCTTGCAGAAAGCA 58 85563573 85566352 GCAATTAGGATTGCAGTTGTC 58 NA Rattus norvegicus 81 Unc45b ENSRNOG00000009466 ENSRNOT00000064625 3 1 1 80 10 70273181 70273199 CAAGCTTTACGAGGACCTG 58 70273242 70275426 AACTTGCTCGTGATGTACTC 58 NA Rattus norvegicus 81 LOC100360124 ENSRNOG00000039782 ENSRNOT00000061040 2 1 1 60 15 5784061 5784082 CAGAAAGACCCAAGAAATCCTC 59 5784102 5784121 CACAGATTCCAGAAGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 1 2 2 101 19 44094838 44094861 CTCAGACATCACAAATATGGTAGG 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Palb2 ENSRNOG00000025126 ENSRNOT00000047420 1 1 1 80 1 192073427 192075885 CACTTCACAGAGGTTCCAG 58 192073365 192073384 CAAACTTCCCAAAGCTACAC 57 NA Rattus norvegicus 81 Chd4 ENSRNOG00000018309 ENSRNOT00000055970 1 1 1 80 4 157625177 157625196 TCTTGGGTTCTATTGACTGG 57 157625238 157625510 CTCGGAAGAACTTAGACTGG 58 NA Rattus norvegicus 81 Dazap1 ENSRNOG00000031387 ENSRNOT00000046886 3 1 1 89 7 12299752 12300415 AGAAGTTTGGAGTGGTCAC 57 12297122 12297143 CGTCCTCGAAAGTAATAAATCC 57 NA Rattus norvegicus 81 Lgr6 ENSRNOG00000005093 ENSRNOT00000006969 2 1 1 80 13 51849360 51849380 ATCTACATAACAACCGCATCC 58 51834722 51849321 AGTTCAAGTCTAGTGTCTCCAG 59 NA Rattus norvegicus 81 Mc5r ENSRNOG00000016685 ENSRNOT00000022364 2 1 1 60 18 64115254 64115273 TCAATAACAAGTCTTCCGCC 58 64115295 64115314 AGAGTTAGGAACACCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msmb ENSRNOG00000039786 ENSRNOT00000026772 3 1 1 84 16 8285764 8288033 GTCTGATGAATGTACAGATGTAGAC 59 8288074 8288093 TTCACAGAAACACCACTCAC 58 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725,ENSRNOT00000077935 3 2 2 80 6 96836039 96836058 TGGTGCTAACAGATGATGGT 59 96836098 96836201 TTAGTTCAAACTGAGTCAACCC 59 NA Rattus norvegicus 81 Faim2 ENSRNOG00000053258 ENSRNOT00000085033 3 1 1 80 7 141172599 141172617 TTGGAACCTGATTCTGCTG 58 141171519 141172037 GTGGTGTTGTAGTAACTGGAC 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 1 2 2 80 7 130168807 130168911 CCTGGAAGCAGTTTGTAATGAG 60 130168748 130168766 ACTCCCATGACAGGTAGGT 60 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 2 2 2 80 5 59082951 59082969 ACATACAACCAGAACCAGC 58 59083013 59084296 TTCAAGGACACAATGGCAG 58 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000046636 ENSRNOT00000074109 3 1 1 67 17 43673316 43673334 GTAAAGGCCTTGGGAAAGG 58 43673365 43673383 GATGCCCTGGATATTGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dsg4 ENSRNOG00000022364 ENSRNOT00000038450 2 1 1 80 18 12079832 12082387 GGCTATAGATGATGGCTCTG 57 12082430 12082448 ACGGGACAGTAATCATTGG 57 NA Rattus norvegicus 81 Nup214 ENSRNOG00000023393 ENSRNOT00000037164 1 1 1 80 3 11050041 11050063 GGTCTAGTAATACTGGTTCTGTG 58 11050103 11057665 CACTGGAAGTGGATGACTG 58 NA Rattus norvegicus 81 LOC100362339 ENSRNOG00000018471 ENSRNOT00000024916 1 1 1 60 17 54058087 54058105 GTGGACACAGTCAAGTTGG 59 54058126 54058147 AGAACCAGTTCTCATCATATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tacr1 ENSRNOG00000005853 ENSRNOT00000007984 3 1 1 81 4 113248173 113340313 GCCTTCGACAGATACATGG 58 113340356 113340376 TGACAAAGATGACCACTTTGG 59 NA Rattus norvegicus 81 Olr323 ENSRNOG00000021069 ENSRNOT00000028601 1 1 1 60 1 228524350 228524369 TGCTGTTTCTCTTCCTTCTC 58 228524309 228524327 ATGATGAGCAGGTTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr323 ENSRNOG00000021069 ENSRNOT00000028601 2 1 1 60 1 228524349 228524368 GCTGTTTCTCTTCCTTCTCC 58 228524308 228524326 CATGATGAGCAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 2 1 1 75 8 81963917 81968420 AAAGATTGCAGAAAGGGCA 58 81968458 81968477 TGCTTGTTCTTCATCTTTGC 57 NA DesignNoJunction Rattus norvegicus 81 Lbx2 ENSRNOG00000052374 ENSRNOT00000086359 1 1 1 164 4 113918893 113918911 ACTTTCCAGGGCCATTCTC 60 113920109 113920127 CTTCTGGAAGACGAATCGC 59 NA DesignNoJunction Rattus norvegicus 81 rno-mir-542-1 ENSRNOG00000046738 ENSRNOT00000074302 2 1 1 62 X 158158899 158158917 GGGATCATCATGTCACGAG 58 158158938 158158961 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0700.6 ENSRNOG00000037114 ENSRNOT00000055958 3 1 1 60 10 70366991 70367012 ACAAAGGCAAACAAACCTAGAG 60 70367032 70367051 CTCTGTCACAGCTTTCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 2 3 3 80 4 156063842 156063862 GAACGAGAGTGAGAAGAACTG 59 156063902 156064911 GTGATGAAGTCCTGTTCTTCC 59 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107,ENSRNOT00000091578 1 2 2 80 2 198990953 198990973 GTAGTAGTGATCAAGAAGGGC 58 198991013 198992382 CCTTGATGATTTGACCTTTCTG 58 NA Rattus norvegicus 81 LOC100910152 ENSRNOG00000033045 ENSRNOT00000044446 2 1 1 75 4 170767145 170767163 CGAGGGACAACAAGAAGAC 58 170767202 170767220 TTGTTGAGCTCTTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klri1 ENSRNOG00000052803 ENSRNOT00000090813 2 1 1 81 4 163515728 163524520 AAAGACAAGGACCCAAATCAG 59 163515667 163515686 ATGGTTATCATCAGCACCAC 58 NA Rattus norvegicus 81 Taf4b ENSRNOG00000026023 ENSRNOT00000037955 3 1 1 80 18 6233591 6249304 AGCCAAGCAACTAATAGTCCA 60 6249345 6249364 CTCAATGGTGAGGAATGGGA 60 NA Rattus norvegicus 81 Gzmc ENSRNOG00000045641 ENSRNOT00000075752 3 1 1 80 15 36450409 36450888 CAGAGGAAGATCAATGACAGTC 59 36450350 36450368 GCCACAGGGATAATCTGCT 60 NA Rattus norvegicus 81 Pank4 ENSRNOG00000014044 ENSRNOT00000019028 1 1 1 80 5 172375383 172375402 CTTCCTGAGACATGAAGGCT 60 172375440 172375729 CTGTACTGGTTAGGATTATCTTGC 59 NA Rattus norvegicus 81 Znrf1 ENSRNOG00000019028 ENSRNOT00000025716 3 1 1 135 19 43750728 43750747 AATGGTTACCAAGAGACCGG 60 43750845 43821781 GGCACTTGAAACCACTGTG 60 NA Rattus norvegicus 81 Cyb5r1 ENSRNOG00000003973 ENSRNOT00000060669 2 1 1 104 13 51235161 51235179 AAGGACATAATCCTGCGGG 60 51235246 51235582 GTAGGTCCAGTCTTCTGGAG 59 NA Rattus norvegicus 81 Ccdc59 ENSRNOG00000004183 ENSRNOT00000005740 2 1 1 81 7 47929932 47932406 CCGAGTACAGTAAATTCTGTGAC 59 47932446 47932465 GTTCATACTCTTCCTGTGCC 58 NA Rattus norvegicus 81 Arcn1 ENSRNOG00000061108 ENSRNOT00000082687 2 1 1 80 8 49053143 49055259 ACTGCAACATACAGGTTACCA 60 49053083 49053104 CTAAGAAAGTGGTCTCTGTGGA 60 NA Rattus norvegicus 81 LOC102551660 ENSRNOG00000019873 ENSRNOT00000026938 3 1 1 80 1 225132324 225132498 GAGGAGCAATTATAACTTAGAAGGC 60 225132535 225132554 CCAGACGGAATGTACATGGT 60 NA Rattus norvegicus 81 Aspg ENSRNOG00000012843 ENSRNOT00000017454 1 1 1 87 6 136691059 136691077 ACGAACTGTGGAGTGATGG 60 136691128 136691880 AAGAACAGGCAGACCTCAG 59 NA Rattus norvegicus 81 Rnase10 ENSRNOG00000010261 ENSRNOT00000013619 1 1 1 60 15 27933417 27933438 CAACAAAGAAATGGCAGTACCT 60 27933457 27933477 CACTTCATCTTCACTGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tceanc2 ENSRNOG00000009398 ENSRNOT00000048784 2 1 1 80 5 126754875 126771152 GACAAGGATAGGTCATGCTG 58 126754814 126754834 GTGTAAACTTCTTTGGCAAGG 58 NA Rattus norvegicus 81 Samm50 ENSRNOG00000011952 ENSRNOT00000016520 1 1 1 80 7 125070802 125071972 CTCAAAGTCAACCAGGAGC 59 125072014 125072034 ATTCAGCTGAAGCTCAAAGTC 59 NA Rattus norvegicus 81 Samm50 ENSRNOG00000011952 ENSRNOT00000016520 2 1 1 80 7 125070803 125071973 TCAAAGTCAACCAGGAGCT 59 125072014 125072035 TATTCAGCTGAAGCTCAAAGTC 59 NA Rattus norvegicus 81 Tmem41b ENSRNOG00000010752 ENSRNOT00000016224 2 1 1 80 1 174610666 174611362 TCCTTGTTTGCTTGTGCTC 59 174610604 174610623 TGTATACAACGGGTCTTCCA 59 NA Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 2 1 1 93 1 274649633 274650324 AAACAAGGGCAGTTGTCTG 59 274649558 274649578 CCAGTCTTTCCAAAGTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000014921 1 1 2 80 9 105612348 105629395 GAAGTGGATACCAACAGCG 59 105612286 105612305 GACTTCAGTGCCATTGACAG 59 NA Rattus norvegicus 81 Eftud1 ENSRNOG00000032723 ENSRNOT00000047408 3 1 1 80 1 144625486 144625506 TAGTGGAACTGAAATTCACCC 58 144625545 144627072 TTCCTGTAAGTGCGTTAATCTG 59 NA Rattus norvegicus 81 Npepo ENSRNOG00000017505 ENSRNOT00000023638 2 1 1 80 17 699025 718538 AATGCAGGTGTTAAGACCCA 60 718578 718599 TTGAGTCCATTCTTGACAACAG 59 NA Rattus norvegicus 81 Acp2 ENSRNOG00000013594 ENSRNOT00000018620 2 1 1 80 3 80027125 80027144 TCACAGAACCTGTCATACCC 59 80027187 80029510 CCACAATCACCTCTGTGTC 58 NA Rattus norvegicus 81 Has1 ENSRNOG00000010994 ENSRNOT00000014824 1 1 1 80 1 59725410 59725428 GGGTAGCCTTCAATGTGGA 59 59724881 59725367 TGTATAGACCCAGAGGACCA 59 NA Rattus norvegicus 81 LOC682646 ENSRNOG00000049837 ENSRNOT00000050916 2 1 1 80 8 44499712 44501129 AGGAGAAACATTGGTTCCCT 59 44499651 44499670 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 2 5 5 80 6 80255295 80255314 CCTAGAAGACACTGCTTCCT 59 80256813 80257355 GAAGCATTTAACTTGGCTGC 58 NA Rattus norvegicus 81 Zfp668 ENSRNOG00000016683 ENSRNOT00000022452 2 1 1 109 1 199314274 199320358 GAAGCATGCAAAGAAGGTC 57 199314183 199314201 AACAGGCACTTATAACGGC 58 NA InUTR Rattus norvegicus 81 Ccdc179 ENSRNOG00000049297 ENSRNOT00000074296 1 1 1 110 1 107383130 107384419 CTACCAGGCAGTCTATGGAG 59 107383039 107383057 TTCCTGGATCTGGAATCGG 59 NA Rattus norvegicus 81 Osbpl1a ENSRNOG00000054058 ENSRNOT00000091909 3 1 1 80 18 4106774 4108879 TTAGTTCGAGATGACCTTGGA 59 4106714 4106732 TTCTGCATGGAATGCACTG 59 NA Rattus norvegicus 81 Tmem126a ENSRNOG00000022748 ENSRNOT00000038333 2 1 1 80 1 156288431 156288449 GTTCTGGGTGGTCTGTACC 60 156288489 156289059 TAGAGGACTTGATTCATACCTGG 59 NA Rattus norvegicus 81 Eif2b5 ENSRNOG00000038160 ENSRNOT00000002321 3 1 1 80 11 84087494 84087512 CAGTCTAGACGGAGTGGAG 59 84087177 84087450 AAGAGCTGAGCTACCTGAG 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910,ENSRNOT00000013937 1 2 2 80 4 28655989 28656007 AAGAAGCTTCTGGATGCTC 58 28654583 28655945 GCAATATGGACCTTCTCCC 58 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810,ENSRNOT00000035323 2 2 2 82 16 47871756 47874638 AACGAGGATCAGGAGATGG 59 47871692 47871713 GAAACTGGACTTAATTCACGGA 59 NA Rattus norvegicus 81 Vom1r11 ENSRNOG00000056833 ENSRNOT00000078071 1 1 1 60 1 60517725 60517746 TCATTATCTCCAAAGGACTCCC 59 60517686 60517705 TTGAATAACTGGTTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir29b2 ENSRNOG00000035637 ENSRNOT00000053760 2 1 1 65 13 113782063 113782081 GAAGCTGGTTTCACATGGT 58 113782109 113782128 CACTGATTTCAAATGGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000079470 2 1 3 82 8 115142552 115143897 CTCCTTCTCTTCATCCAGCT 59 115142251 115142269 ATTCTGCAGCTGTAGGTCC 60 NA Rattus norvegicus 81 Rn60_X_0774.1 ENSRNOG00000060085 ENSRNOT00000084086 3 1 1 80 X 77323059 77323077 AATAACCTCCAACCAGGCA 59 77322877 77323018 TACATCTGAAGGACAACTTTGG 58 NA Rattus norvegicus 81 Bsnd ENSRNOG00000006543 ENSRNOT00000008739 2 1 1 92 5 126076387 126080279 ATCCTAAGATCACCTTTGTGC 58 126076315 126076333 CTTCTGAAAGCCCAGTCTC 58 NA Rattus norvegicus 81 Herpud1 ENSRNOG00000018796 ENSRNOT00000025559 1 1 1 80 19 11050649 11050988 GTACTACATGCAATACTTGGCT 59 11050590 11050609 ACCACAGGTATTTCTTGTGC 59 NA Rattus norvegicus 81 Rn60_X_0747.2 ENSRNOG00000022281 ENSRNOT00000029178 3 1 1 60 X 73808255 73808276 AATTCAAGTCCAGCTAGTTCCT 60 73808216 73808234 GAGGTCTACATGCTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912159 ENSRNOG00000046583 ENSRNOT00000074072 1 1 1 60 10 12433245 12433264 GAACCCTTTCATCTACAGCC 58 12433204 12433224 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 1 2 2 80 17 4313947 4313967 CAGACTGTCCTCTACCAACTC 60 4313034 4313908 TTGTTAATGCTCACTGAGACTG 59 NA Rattus norvegicus 81 AABR07051548.1 ENSRNOG00000045966 ENSRNOT00000046489 1 1 1 118 3 16750191 16752334 CTATGGCCTATTTGGCTGTG 59 16750092 16750110 TGGTTTCTGCTGGTACCAG 60 NA Rattus norvegicus 81 Olr704 ENSRNOG00000031282 ENSRNOT00000041001 1 1 1 60 3 78409056 78409074 CTGTCACTTCTGGATGCTG 58 78409014 78409034 GCAAGTCTATCATCAACTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc1l2a ENSRNOG00000022267 ENSRNOT00000029100 1 1 1 60 X 73895231 73895252 CATATGTCAACTACCAGCAACC 60 73895192 73895211 TCAAAGTTCATGGTCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd65 ENSRNOG00000043331 ENSRNOT00000068770 3 1 1 112 5 173238617 173239536 ACCACCAAGAAATTGAGGTG 58 173239610 173239629 TATAGCACGTAGACAGCCAC 59 NA Rattus norvegicus 81 LOC100363043 ENSRNOG00000029146 ENSRNOT00000049927 1 1 1 63 15 33333518 33333536 ACTCTTGTGATCTCTGGGC 59 33336744 33336762 TGGAAGACGATTCCAGTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir140 ENSRNOG00000035609 ENSRNOT00000053732 3 1 1 61 19 39608987 39609007 ATGGTAGGTTACATCATGCTG 58 39609030 39609048 GTGCTCCAGTATCCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr188 ENSRNOG00000017351 ENSRNOT00000023293 1 1 1 60 1 169944971 169944989 TTATGACCGCTTTGTTGCC 59 169945012 169945031 TTTATTGGTGAGGATCGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgb3 ENSRNOG00000011096 ENSRNOT00000015044 2 1 1 82 14 51460497 51460752 AGAGGTGGAAGACGATGTC 59 51460433 51460451 TTCACGATCGTAGCGTACC 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 3 2 2 80 4 57830772 57832754 TAAGTAAAGCAAGCAAAGAGGC 60 57832793 57832813 GTTTCTTCAGCACTAGTGAGG 59 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 3 2 2 80 18 11780757 11780777 TGAAGCCTGTAAAGATGTGAC 58 11779027 11780718 TCCTTCAAACTAACTCTTCCGA 59 NA Rattus norvegicus 81 Lgi2 ENSRNOG00000003887 ENSRNOT00000005168 2 1 1 80 14 60768170 60768189 ATTCTAACTCCTTCACGGTG 57 60768231 60770054 TGTTCCCTTCAATGAACAGG 58 NA Rattus norvegicus 81 LOC100910771 ENSRNOG00000047516 ENSRNOT00000007657 3 1 1 80 9 114067084 114067102 CACTACCTCAGGACCAACC 59 114067145 114072471 GAGCCATTGGTATCTGTGGA 60 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506,ENSRNOT00000085094 1 2 2 80 2 85676459 85676477 TACAACGAGCTTCAAAGCA 58 85676520 85681998 AATGCTGTTTACATTGGTGG 57 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506,ENSRNOT00000085094 2 2 2 80 2 85782171 85782191 TGGAAGTAGGAAGACAAAGGA 59 85782232 85785842 CAGAAAGTCCATCTGTGGAG 58 NA Rattus norvegicus 81 LOC690384 ENSRNOG00000039487 ENSRNOT00000060519 3 1 1 60 15 28439377 28439395 ATGACCCGAGAATACACCA 58 28439419 28439437 ACTTCTTGAAGCCCACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500475 ENSRNOG00000024506 ENSRNOT00000034978 3 1 1 80 5 78404006 78404027 TTACATTCTGAAGCCATACCAC 59 78404067 78404727 ATGTGACAAGATGCATTCCT 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189,ENSRNOT00000085285 2 2 5 80 8 6140371 6140687 GTCAGAGCGGGAATTAGCT 60 6140309 6140328 GGAGAAGACACTGCATTCTG 59 NA Rattus norvegicus 81 AC124205.1 ENSRNOG00000012595 ENSRNOT00000016814 2 1 1 83 5 140486356 140486379 ATGAGTGGATATGCATTGCA 58 140486425 140486443 TCAGAGTTGCTCTTGTTGC 58 NA Rattus norvegicus 81 Cpa4 ENSRNOG00000010463 ENSRNOT00000013880 3 1 1 80 4 57891674 57891693 GCAACACAATGAAGGGAGAG 59 57891734 57895244 ATCTCGTGGTAAATAGCCTCC 60 NA Rattus norvegicus 81 Coa7 ENSRNOG00000010636 ENSRNOT00000014401 2 1 1 65 5 127929339 127929357 GACAGCTGTTACAAGCTGG 59 127934017 127934036 CTTTAGGTCCTGAGTGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp536 ENSRNOG00000014163 ENSRNOT00000018956 3 1 1 118 1 93866710 93946827 CTTCTTCAGACATCGGCGA 60 93866610 93866629 GAAAGTCTTCGCACAGTACG 59 NA Rattus norvegicus 81 LOC100359671 ENSRNOG00000040039 ENSRNOT00000048888 2 1 1 60 11 29638897 29638917 CAAATCTAAGAACCACACCAC 57 29638857 29638877 CTTGATACCATTTCTGTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000079231 3 1 2 80 X 123209965 123212614 CAGTTCACCTTCAAGTACCA 58 123212655 123212675 TTCTTCATCATCCGAGTACAC 58 NA Rattus norvegicus 81 Hiatl1 ENSRNOG00000018227 ENSRNOT00000067979 1 1 1 83 17 2617027 2618597 TTGGCTCAGACAGTCTTCC 59 2616962 2616980 TATCTGGAAACCCAAGCCA 59 NA Rattus norvegicus 81 Tubgcp6 ENSRNOG00000006028 ENSRNOT00000007954 2 1 1 80 7 130082127 130082228 TCTTCAAAGTAGTGACCAAGC 58 130082067 130082086 TGTTGAAGTTGATCCGAAGC 59 NA Rattus norvegicus 81 Dhrs1 ENSRNOG00000020264 ENSRNOT00000027511 1 1 1 80 15 34428565 34428584 TTTGAGCAAGTAGATCGGGA 59 34428360 34428522 CAGGATTGCCTGTACACCA 60 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 3 2 2 80 15 3094068 3094086 AAGGTGAACTCGAAGAGGC 60 3056948 3094026 GACATCATTTCCTGTAGCCAC 59 NA Rattus norvegicus 81 Olr1514 ENSRNOG00000033267 ENSRNOT00000048167 1 1 1 60 10 61045183 61045201 ACATTCGCCTTCATAACCC 58 61045141 61045160 AAGATGTCAACAAGGGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC299277 ENSRNOG00000037743 ENSRNOT00000057298 2 1 1 85 6 127882818 127882837 ATCATGGACGTGTTCAACAC 59 127872847 127882772 GTGTTGTGGATCATCTGAGAG 59 NA Rattus norvegicus 81 RGD1311892 ENSRNOG00000025948 ENSRNOT00000035404 1 1 1 111 13 53094697 53095449 TGGAGGAAGAAGACTCCCA 60 53094604 53094622 GATTCAGGTCCTGTTGGCT 60 NA Rattus norvegicus 81 Mrps17 ENSRNOG00000000926 ENSRNOT00000001229 2 1 1 82 12 30572267 30572286 TAAAGTAAGAGCGACCAGAC 57 30571161 30571179 CGTCATGAGCAAAGTAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 1 2 2 80 16 36001826 36032281 CCAAGAAGAATGCAAGTATTGG 58 36032319 36032340 CATCCTTCATTATGGAAGACGA 58 NA Rattus norvegicus 81 LOC691952 ENSRNOG00000037178 ENSRNOT00000056119 1 1 1 80 3 114129853 114131242 GACACCCTGAGAATCTATCAGAG 60 114131280 114131300 TACTGCAGCAAGATAGTAGGC 60 NA Rattus norvegicus 81 Olr300 ENSRNOG00000033032 ENSRNOT00000050237 1 1 1 60 1 213040157 213040178 TTATCACAGTCATTCACAGCAG 59 213040196 213040217 TTGACTAGGAAGAAGTACATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B2m ENSRNOG00000017123 ENSRNOT00000023017 1 1 1 80 3 114090356 114090376 GAGACCGATGTATATGCTTGC 59 114090418 114090949 TTACATGTCTCGGTCCCAG 59 NA Rattus norvegicus 81 Hal ENSRNOG00000004502 ENSRNOT00000006971 3 1 1 80 7 34336167 34336186 AATTGAAGTTGCTTTCCGGT 59 34336229 34336340 CAGAACCTGTGGCTTTCTG 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 1 2 2 89 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187097 184187115 ATAGTTCTGCACCAGTGCA 59 NA Rattus norvegicus 81 Fam81b ENSRNOG00000026845 ENSRNOT00000036547 2 1 1 80 2 3094057 3099083 ACATTGAGCTCCTAGAAGACC 59 3093997 3094016 TGTTTAGATCCTGCACTGCA 60 NA Rattus norvegicus 81 Prpf38a ENSRNOG00000009451 ENSRNOT00000012635 3 1 1 80 5 128178889 128178907 GACTTGGACAAGCCAAGAC 59 128178174 128178845 AGATCTACTCCGCCTTCTG 58 NA Rattus norvegicus 81 Rangrf ENSRNOG00000004980 ENSRNOT00000006883 1 1 1 80 10 55560121 55560223 CATTGATGTGAGTGACCTCC 58 55560060 55560078 ATGATCAGACTCTGGTCGG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595,ENSRNOT00000021858 2 2 2 80 1 177123275 177126547 GACCACATCAGTATCCGAC 57 177126589 177126609 CACATTCACATGGATTTCCAC 58 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 1 2 2 80 1 104142077 104142098 AGAGAATCAGCCTCTTAAAGCA 60 104142138 104144489 TGAATCCGAGGTTGTATGGT 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 1 3 4 80 17 4271371 4271863 GCATATGAAGCACAGGATGG 59 4271906 4271924 TGGGACTTTCACAAAGCCT 60 NA Rattus norvegicus 81 Msrb1 ENSRNOG00000055314 ENSRNOT00000090552 3 1 1 80 10 14108460 14108481 CATTTACTGAAACCATCCACGA 59 14108521 14108894 CACAGGACACCTTTAAAGCT 58 NA Rattus norvegicus 81 Sec22b ENSRNOG00000018673 ENSRNOT00000025327 1 1 1 80 2 200088237 200088255 AATTTGACGAGCAGCATGG 59 200088296 200089936 TCTGAATGAAGGTGTCAAACTC 59 NA Rattus norvegicus 81 Mir381 ENSRNOG00000035493 ENSRNOT00000053616 3 1 1 61 6 133876606 133876625 GGTACTTAAAGCGAGGTTGC 59 133876647 133876667 TGCCCTTGTATATCCCATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cerk ENSRNOG00000017022 ENSRNOT00000022882 1 1 1 80 7 127033863 127039251 GAACCTGACTTCAAGACCGA 60 127033802 127033820 TCATAGATGTGCTTGCCCT 59 NA Rattus norvegicus 81 AABR07054716.1 ENSRNOG00000047454 ENSRNOT00000072202 2 1 1 87 3 167513809 167513828 GGCATTGCTGAATCCTTCTC 59 167513995 167514384 CCAAATGTAGCCTATAGCGC 59 NA Rattus norvegicus 81 Prtn3 ENSRNOG00000029814 ENSRNOT00000014687 1 1 1 80 7 12643862 12644418 CATTTGCTTCGGAGACTCG 59 12643800 12643818 CATTCGCGAATCACGAAGG 60 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001,ENSRNOT00000085483 1 2 2 80 4 56815280 56815513 AGCTCATTACTGTACAGGTGG 60 56815555 56815573 CTGCTGACCAAGAAAGCTC 59 NA Rattus norvegicus 81 Vom2r29 ENSRNOG00000038497 ENSRNOT00000040441 1 1 1 80 1 74257794 74257812 GAGAGTCATCTGCAACAGG 58 74257854 74265850 GGAGTTTAACTTCAAGCAGTG 58 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 1 2 2 80 4 86139250 86141460 AGACTATATGAGATCTCTGCACC 59 86141497 86141518 GAGGAATAGCAAGAGTTGAGAC 59 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 1 2 2 80 1 209796978 209797090 TATACTGGAGGATGAAGAAGTGC 60 209797129 209797148 CCTCTCACATACAGCTGAGG 60 NA Rattus norvegicus 81 RGD1562114 ENSRNOG00000016193 ENSRNOT00000021677 2 1 1 80 7 12399715 12399736 CGCTTGTTCTACGTAATTACTG 58 12399013 12399676 TGGCTTCTTTAGTCTAAAGGC 58 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588,ENSRNOT00000044893 3 2 2 80 7 117659566 117659584 CAACCGAGTACATCCAGAC 58 117659628 117659733 GGAACAACTCATCCACCTC 58 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000071384 1 2 3 80 1 164705852 164706238 TGCTGGAACTCTAGATGTTCC 60 164706279 164706298 CCATTGCAGGTTGTAGTCTC 59 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682,ENSRNOT00000084986,ENSRNOT00000050284 1 3 3 80 13 52680091 52680109 AGTATCCACAACCTGGAGG 58 52680153 52680432 TCGCAGAACGTTGATTTCG 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 2 2 3 85 6 135088718 135089318 GCCTTCAGATCAACTCCAG 58 135087760 135087780 TGAGTCTCCATCATAAGGGTC 59 NA Rattus norvegicus 81 Afmid ENSRNOG00000050205 ENSRNOT00000073809 3 1 1 80 10 106829061 106831457 TGTCTTCAGAGGAACTGGA 58 106831501 106831519 AATTCCCGACAACTTCCTC 58 NA Rattus norvegicus 81 Olr905 ENSRNOG00000048201 ENSRNOT00000040030 3 1 1 60 7 5451116 5451135 TCATCACTCTCACCTTGCTG 60 5451075 5451099 TTCTGGAGGAAGAAATACATAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 3 1 1 60 4 163122245 163126755 TTAAGAACAAGGATGAGCTGGA 60 163126771 163126794 GCTAGCCAATAATTGTATAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801,ENSRNOT00000080379 2 2 2 80 3 123059361 123061917 AACATCCTGCCTTATGACC 57 123061960 123061979 TGAGGCGTTGATGTAATCAG 58 NA Rattus norvegicus 81 Cnot1 ENSRNOG00000012271 ENSRNOT00000016563 1 1 1 80 19 9722547 9722567 ACGAAGCAAACAGCTATTTCC 60 9722604 9722871 GCATTTCTAGTACCTCATCAACAG 60 NA Rattus norvegicus 81 Ctsg ENSRNOG00000020647 ENSRNOT00000059677 1 1 1 80 15 35111818 35111838 CGTTTCCAATTCTACAACAGC 58 35111358 35111776 AGAATCACCCTTGAAGGCA 59 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242,ENSRNOT00000037296 3 2 2 80 12 31352553 31353494 CCAGCTAGAGATCACTGGG 59 31353538 31353556 ATGAAGATGGACGGCTTCC 60 NA Rattus norvegicus 81 Tnfrsf1a ENSRNOG00000031312 ENSRNOT00000048529 1 1 1 80 4 157872674 157872996 GTCGGAAAGAAATGTTCCAGG 60 157873038 157873056 ATTGGTTCTTCTTGCAGCC 59 NA Rattus norvegicus 81 Vom1r69 ENSRNOG00000058549 ENSRNOT00000088453 1 1 1 60 4 87455269 87455288 CTATCTGTATCACCTGCCTC 57 87455309 87455329 GAGGTACTGGGACTTATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl2l2 ENSRNOG00000015732 ENSRNOT00000020409 1 1 1 160 15 33544400 33544703 CTTCTTCCTGACTCGGCTC 60 33545290 33545308 AAAGTCAGCCACTAGAGCC 59 NA InUTR Rattus norvegicus 81 Xpnpep3 ENSRNOG00000019196 ENSRNOT00000068666 3 1 1 80 7 122663068 122663087 CACCTGCGGCTAATTAAGTC 59 122663127 122670025 CTCTATGAAAGCCTCTGATGTC 59 NA Rattus norvegicus 81 LOC100910780 ENSRNOG00000047935 ENSRNOT00000073295 1 1 1 60 18 54207398 54207421 GACCACTATCTAGACAAGTATGAG 58 54207438 54207458 CTTTGATGTAGACATCGTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r5 ENSRNOG00000032365 ENSRNOT00000041332 1 1 1 81 1 806944 806962 ATCAGAAAGAAACAGCCGA 57 805739 806902 TCCATATCTGCTGTATCATTGG 58 NA Rattus norvegicus 81 Olr1449 ENSRNOG00000046934 ENSRNOT00000047671 3 1 1 60 10 44651217 44651237 TTCCTATGCTCAGGTATTGGT 59 44651259 44651277 TTTACTCTGTCCCTTCCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696,ENSRNOT00000002006 1 2 2 80 12 29026534 29028098 GACAAGTCAGAGAAGTGGGA 59 29028141 29028159 AAACAGAATCTGCACGCAC 60 NA Rattus norvegicus 81 Reg3b ENSRNOG00000006151 ENSRNOT00000008212 2 1 1 82 4 109468556 109468575 GCATCCATGGTCAAGAACAC 60 109468620 109469212 TTGGGTTCTCCACCAAGAG 59 NA Rattus norvegicus 81 Neu3 ENSRNOG00000018106 ENSRNOT00000024420 3 1 1 81 1 164810065 164814475 GTGAGCTGAGAAGTCATGG 58 164810002 164810023 TAATCCTGTTCTGTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Olr1076 ENSRNOG00000039448 ENSRNOT00000060455 1 1 1 60 7 13425072 13425091 TCACTTCTATCACTGTCCCA 58 13425031 13425049 ATGATGACCTTGCTCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052,ENSRNOT00000087906,ENSRNOT00000014709 1 5 5 80 2 1511560 1511579 CCAGAATGAGTACCACAGGA 59 1508846 1510429 CATGAATCACAGGTGGCTC 59 NA Rattus norvegicus 81 Dut ENSRNOG00000007221 ENSRNOT00000009549 2 1 1 80 3 117516842 117516860 GGGTGCTATGGAAGAGTGG 60 117518879 117524589 TTCATCTATGACACCGGCTC 60 NA Rattus norvegicus 81 Tcf7l1 ENSRNOG00000014753 ENSRNOT00000020005 1 1 1 80 4 100500475 100514415 CACACTTGTCCAACAAAGTC 58 100500414 100500432 TGCTGTAGGTGATGAGAGG 59 NA Rattus norvegicus 81 RGD1307621 ENSRNOG00000023230 ENSRNOT00000034756 1 1 1 80 6 86654246 86655628 CGCACAATTAGTATAAATCCTCCC 60 86655663 86655685 GGAACAGAATAACTCATCCACAG 59 NA Rattus norvegicus 81 Mir143 ENSRNOG00000035603 ENSRNOT00000053726 2 1 1 60 18 56971319 56971337 CTCTGGTCAGTTGGGAGTC 59 56971277 56971297 CAGAACATCTTCTCCCTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd13c ENSRNOG00000011340 ENSRNOT00000015170 1 1 1 80 2 264809257 264814665 AATATCAGGCTTGACACAACTC 59 264814706 264814724 CCCACTGAAGATGAAGCTC 58 NA Rattus norvegicus 81 Dhrs7c ENSRNOG00000026548 ENSRNOT00000036752 2 1 1 80 10 54364609 54364629 AAGATTTCTCTGGAGCTTGAC 58 54364671 54366354 GGGAAGCAGAACTTTGGTG 59 NA Rattus norvegicus 81 Faf1 ENSRNOG00000008523 ENSRNOT00000011765 3 1 1 80 5 129528935 129585587 CTGATGATTCAATGTGTCTTGC 58 129585628 129585646 CAGGTGAAGTTCTTCGTCC 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895,ENSRNOT00000086978 1 3 4 62 20 3827130 3827148 TTCCTCCCTACCTCTGGAC 60 3827347 3827365 ATGAGGAGCTCATTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07062181.1 ENSRNOG00000055455 ENSRNOT00000079951 1 1 1 80 4 163950406 163950424 TCAGATGTCAACAAGCCTG 58 163946770 163950362 GCTGAAGGAACTTCAGCTC 59 NA Rattus norvegicus 81 Olr1529 ENSRNOG00000039714 ENSRNOT00000048427 2 1 1 60 11 43153770 43153791 GACCATTGTAGTCTCTTATGCC 59 43153809 43153830 CTTCTCAGACTTCATGTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx15 ENSRNOG00000003844 ENSRNOT00000005126 3 1 1 80 14 61165067 61167752 CATGTTGTCAGTCCCACAG 59 61167796 61167814 TGGGCAAATCTCATCTTGG 58 NA Rattus norvegicus 81 Echdc2 ENSRNOG00000029333 ENSRNOT00000047653 3 1 1 81 5 127788493 127789054 TGCTATGCCCAGAACATCC 60 127789099 127789117 CCACAAATTTGGGAGGTCG 59 NA Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599,ENSRNOT00000011324 2 2 2 80 13 53010082 53010100 CCTAGATGCTTTGCGTGAG 59 53010143 53010282 TAGCCATTCTCATGTTGCAC 59 NA Rattus norvegicus 81 AC109901.2 ENSRNOG00000059447 ENSRNOT00000074614 2 1 1 80 11 85618747 85618889 TATCACTTAACAGGGTCATGTG 58 85618927 85618948 TTTGACTGTGCTTTCTAGAGAC 59 NA Rattus norvegicus 81 Rd3l ENSRNOG00000043031 ENSRNOT00000065971 2 1 1 81 6 136548958 136549275 ACTGTTCTCAGCAGATTTCG 58 136548896 136548917 GAACTTGCTTGAAGATGTAGAC 58 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 3 2 2 81 11 37928521 37929113 TACGAAGGTGATAACTCTGAGC 60 37928461 37928480 CATGAGTCACCATGAACAGC 59 NA Rattus norvegicus 81 Wfikkn1 ENSRNOG00000021578 ENSRNOT00000060156 1 1 1 166 10 15245692 15245710 CATCCATCTGACCTCGGAG 59 15244874 15244892 CATTGGTGCAGCACTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Nmbr ENSRNOG00000012103 ENSRNOT00000016215 1 1 1 80 1 8941247 8941272 CTCGGATAACAGTTTCACAGTC 59 8941313 8941331 ATATGGCAGCATGAGTGGA 59 NA Rattus norvegicus 81 LOC100912159 ENSRNOG00000048615 ENSRNOT00000071005 2 1 1 60 10 12213948 12213968 GAACCCTTTCATCTACAGCCT 60 12213908 12213928 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca7 ENSRNOG00000012939 ENSRNOT00000064886 1 1 1 80 7 12748857 12748878 TAGATCGTATCCTGAACAACCT 59 12748711 12748819 TGTTGTTGAACCAGATCTTGAG 59 NA Rattus norvegicus 81 Btf3l4 ENSRNOG00000008512 ENSRNOT00000011272 1 1 1 80 5 128434922 128434942 AATACTAAGTCAGCTTGGTGC 59 128433865 128434882 CTATCCAATACTTGTCGTGGG 58 NA Rattus norvegicus 81 RGD1563956 ENSRNOG00000025014 ENSRNOT00000030686 3 1 1 60 11 83856152 83856171 GAGATTGTCAACATTGCAGG 58 83856194 83856212 TTCCAGAAAGTTCTCTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1007 ENSRNOG00000050845 ENSRNOT00000044587 1 1 1 60 7 6068844 6068862 ATTGTCCCTCTCCTGAACC 59 6068886 6068904 AGACTTCTTTCACCTGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gp1bb ENSRNOG00000046981 ENSRNOT00000040954 1 1 1 199 11 86521035 86521053 AGTAGGCCTCCATCCTCTC 60 86521447 86521465 ATTCTGTAGTGTCGGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bbs2 ENSRNOG00000019020 ENSRNOT00000026076 2 1 1 80 19 11400915 11402777 AGTCAGAGCTTCTTGTTGG 57 11402821 11402839 TCTCTGTCATTTCTGCCAC 58 NA Rattus norvegicus 81 Tmem52b ENSRNOG00000058653 ENSRNOT00000079337 1 1 1 87 4 163268009 163269129 TTTCATCCAGCTTCCTGGG 60 163271161 163271179 ATACCAGAGATGCACCCAG 59 NA Rattus norvegicus 81 Olr951 ENSRNOG00000047710 ENSRNOT00000051670 3 1 1 60 7 6645015 6645035 TGCAGACCATTACATTACCCT 59 6645056 6645075 TGAGGACAAGTTGATGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 2 2 2 80 11 81785800 81789546 TCGTTTGACAAAGGAGCAG 58 81789589 81789608 TGTCCTGTACTAACCAACCA 58 NA Rattus norvegicus 81 Olr1059 ENSRNOG00000032290 ENSRNOT00000044356 1 1 1 60 7 16363712 16363732 GGGCAACTTCATAATCATCCT 58 16363751 16363772 ATACATAGGAGTCTTGAGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Marcks ENSRNOG00000000579 ENSRNOT00000000707 1 1 1 113 20 42966526 42966544 GTGCACAGTTCTCCAAGAC 59 42966621 42968157 TTACGTGGCCATTCTCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Khk ENSRNOG00000008047 ENSRNOT00000043572 3 1 1 81 6 26813704 26815032 TTCTCTACGACACGAACCT 58 26813641 26813659 ATGTGGATCCACTTGAACC 57 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511,ENSRNOT00000056172,ENSRNOT00000086835 3 3 3 80 2 200762115 200762133 AGGAGAAAGAACTGCAGGA 58 200760406 200762073 TCTGCAGCTTAGAGAATTCCT 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174,ENSRNOT00000083194 3 2 2 81 8 22300236 22300254 TTCTGCTCTACCTGGATCC 58 22300299 22300395 CAGTGAAAGGACTCCAGTG 58 NA Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000083871,ENSRNOT00000058803 3 2 2 80 14 70780889 70780910 CATACACCATACATGGTACAGC 59 70780951 70911934 GTCACTGTCCTCTGTACGA 59 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000086003,ENSRNOT00000085336 1 2 3 80 1 199621516 199621659 TCGCTATCGTGTGAATAACCT 59 199621701 199621719 ACACCGTTCAGAAGGACAG 60 NA Rattus norvegicus 81 Elf4 ENSRNOG00000005352 ENSRNOT00000044487 3 1 1 80 X 135245458 135245477 GGAGTATTCTCTGGAGGAGG 58 135244392 135245418 TTTGTCTTTCGGTTTCTCTTCC 59 NA Rattus norvegicus 81 Clec4f ENSRNOG00000013137 ENSRNOT00000017643 3 1 1 80 4 115330661 115330681 GAGACAGAAGCAGAATGAGGA 60 115329284 115330621 TGGGAACAATTGTCAGATCCA 60 NA Rattus norvegicus 81 Rab4a ENSRNOG00000017467 ENSRNOT00000049337 1 1 1 80 19 56607006 56607024 GGAACAAGAAGGACCTGGA 59 56607066 56610365 ACATGAGCTCATTCTCTTGTG 59 NA Rattus norvegicus 81 Pacs2 ENSRNOG00000014744 ENSRNOT00000056880 1 1 1 80 6 137879391 137883036 CTACAAGCAGAAGAGCCCT 59 137883923 137883942 TCCACAATTCCAACCTTCAC 58 NA Rattus norvegicus 81 Gclc ENSRNOG00000006302 ENSRNOT00000033196 3 1 1 80 8 85059198 85059216 CAGTTCCTGCACATCTACC 58 85059260 85078557 CAACATGTACTCCACCTCG 58 NA Rattus norvegicus 81 RGD1562299 ENSRNOG00000015249 ENSRNOT00000020499 2 1 1 88 9 15514541 15514559 AGCTCTTTGCTGACAGAGG 60 15514610 15516601 TCTGAGATGTAGCTCTGCAG 59 NA Rattus norvegicus 81 Rn60_X_0770.1 ENSRNOG00000048710 ENSRNOT00000073878 2 1 1 60 X 76998204 76998223 AAATGATGAGAGTTGCCTCC 58 76998245 76998264 TGTTCTCGTGTGAAACTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 3 2 2 80 15 27850644 27850662 TGCCACACTCAAGATATGC 58 27850706 27851137 TCCTTTACCCAATCCAAGC 57 NA Rattus norvegicus 81 Zfp280c ENSRNOG00000006797 ENSRNOT00000044435 3 1 1 80 X 135406503 135411276 AGACTGTGTCTAAACCTACCT 58 135406443 135406462 TTGAGTCTAACAGTGAGGCA 59 NA Rattus norvegicus 81 Ephb3 ENSRNOG00000031801 ENSRNOT00000044896 1 1 1 80 11 83528844 83528975 CAGATGACTGCAGAAGATCTG 59 83528784 83528802 GTCCTGGATACTGCTGAGG 59 NA Rattus norvegicus 81 Mettl25 ENSRNOG00000027451 ENSRNOT00000038144 2 1 1 80 7 47850318 47865547 GATTAGATGAGTCCAAGATCTCTG 58 47850261 47850282 CCTCTAGCTCATTCATTCTAGG 58 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000079185,ENSRNOT00000007259 3 2 2 80 6 42856393 42856413 GTATCTGCTTGACATTGGTGG 59 42856452 42856988 TTGATTACACTGGTGATCTCCT 59 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 1 1 1 76 1 78808853 78808871 GATCTGGCTCCTATGGACG 59 78808911 78810283 GCCTAAGGACTTGGGTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000085799,ENSRNOT00000088198 1 3 3 80 10 70537286 70537309 CTATCTGATGAACTATGCCAAGAG 59 70537347 70539814 GGGTCTTCACAATCCTTCAC 59 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 1 2 2 80 10 55493240 55494307 GAAGTTCAGGTTGTTCGAGG 59 55494345 55494368 GATGACGTATTTCTTCCTGTACAC 60 NA Rattus norvegicus 81 Klhl35 ENSRNOG00000017365 ENSRNOT00000023386 1 1 1 80 1 164427550 164428117 ATGACATTTACGTTTCTGGAGG 59 164428158 164428176 CCTTGATCCAGGTGTTCAG 58 NA Rattus norvegicus 81 Crlf2 ENSRNOG00000049828 ENSRNOT00000075656 2 1 1 97 14 1460200 1460218 TTTGCCATGACCTGGAGAG 60 1459607 1460140 GTTTCCATACCGGAACTCCA 60 NA Rattus norvegicus 81 Olr109 ENSRNOG00000015919 ENSRNOT00000021304 2 1 1 80 1 168643818 168644024 CATAACTATTCAACCACCTACCC 59 168643760 168643782 AGTGGGATACAGAACCATATCTG 60 NA Rattus norvegicus 81 Mapk8ip2 ENSRNOG00000032828 ENSRNOT00000055792 1 1 1 80 7 130433797 130433816 CTTCCATAGAGGAGTCCCAC 59 130433859 130433993 TGTTGTTGAGGGAGTCCTG 59 NA Rattus norvegicus 81 Hip1r ENSRNOG00000001091 ENSRNOT00000034264 1 1 1 80 12 38031185 38031391 CATGAAGGATGACAGGGAC 58 38031123 38031142 TTAATCTTCTCCAGCTCAGC 57 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452,ENSRNOT00000055318 3 2 2 80 2 252773474 252773493 GAGACGAGCAACCTTATCTG 58 252773533 252774286 GTTGATTCTCTGGTAGTTCTGC 59 NA Rattus norvegicus 81 Lmntd2 ENSRNOG00000017050 ENSRNOT00000022954 1 1 1 80 1 214198485 214198618 CAGTTGAATCCATTTGGCTG 58 214198424 214198442 TGACTGGTTGATAATGCGG 58 NA Rattus norvegicus 81 Tmprss4 ENSRNOG00000026650 ENSRNOT00000040313 2 1 1 80 8 49478013 49478033 GGAACTTCAGATGCAGAATGG 59 49474916 49476479 CTCTTTCCACAGTCAAGGC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 3 2 2 80 7 130124241 130124453 TGGAAATGACTACATCGACCA 59 130124181 130124202 GATATCTTTGCCAGAACCTCAG 59 NA Rattus norvegicus 81 Ppp1r21 ENSRNOG00000016528 ENSRNOT00000061675 1 1 1 80 6 12280461 12283392 CATTGAATCAGAAGTTCTCCCA 59 12283430 12283451 ATAAATGCAGCATTCCTTCCTC 59 NA Rattus norvegicus 81 Pex6 ENSRNOG00000016655 ENSRNOT00000022582 1 1 1 80 9 16570255 16570274 CTTTGATGAACTGGACTCCT 57 16569936 16570212 TGAGACACAACTCTGTCCA 58 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000072518 3 1 2 82 8 52751892 52751912 GGCTGCTAATATTCACATCGT 59 52751956 52753022 AGTGGTCCATAGCTTTGCA 59 NA Rattus norvegicus 81 Olr1435 ENSRNOG00000029289 ENSRNOT00000050288 2 1 1 60 10 44348033 44348054 AGCCTGTTCTATGTCACTACTC 59 44347994 44348012 CAGGAGAATGCAAGGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx3 ENSRNOG00000021013 ENSRNOT00000028535 3 1 1 80 1 228158396 228158416 CAAAGTACAATGAGGCACAGG 60 228157537 228158357 TCTTGCCAGTAATTTCAAGCTG 60 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 3 2 2 85 7 49531792 49531810 AAGTACCAGTGCACAAGCT 60 49531855 49589072 CATGTATTGATACACCTCTCGGA 60 NA Rattus norvegicus 81 Olr1445 ENSRNOG00000046040 ENSRNOT00000073040 2 1 1 60 10 44568874 44568893 CAGACACCAAGACCATTTCC 59 44568916 44568934 AGGGTCAGAAACACAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2l3 ENSRNOG00000001862 ENSRNOT00000046159 3 1 1 80 11 88067351 88083072 TATTGTTCCTGACAACCCTC 57 88083115 88083133 GGCTTGAAGGGATACTCTG 57 NA InUTR Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 2 1 1 61 1 198528682 198529118 GTCACCCATGCTCAATAAGC 59 198529142 198529160 ATATCTTCCTGCTTCCCGA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 3 1 1 61 1 198528682 198529118 GTCACCCATGCTCAATAAGC 59 198529141 198529160 ATATCTTCCTGCTTCCCGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Man1a2 ENSRNOG00000015226 ENSRNOT00000067000 2 1 1 80 2 202986395 202988647 TGATTTCAGTGTGAACTCGG 58 202986334 202986353 AGGTAATATGCTGCAAGGAG 58 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713,ENSRNOT00000035907 2 2 2 80 9 15661312 15661330 TCACCATCTCACAGTACCA 58 15656271 15661268 AAAGAAGACCTTGCCACAC 58 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 2 2 2 96 8 116885170 116887269 GACTAGGTAGCCAGGTGTC 59 116885092 116885110 GGAAGGTGAGCTTCCTCTG 60 NA Rattus norvegicus 81 Gp9 ENSRNOG00000010015 ENSRNOT00000013282 1 1 1 109 4 119680604 119680622 CTCCTGTCAAGCAACACTG 59 119681461 119681479 TAGGTATCCAGCAGATGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ulk4 ENSRNOG00000019271 ENSRNOT00000074423 2 1 1 80 8 129748497 129770338 GCTTTATGAGCAAGGACTCG 59 129748436 129748455 TTATTGTCCCTATCCAGGCA 58 NA Rattus norvegicus 81 Dcaf10 ENSRNOG00000011655 ENSRNOT00000016384 3 1 1 81 5 60932654 60932672 TGGTTCACCTTGTCATCAC 58 60932717 60932888 TGGTGAAACTCCTTCTCGT 59 NA Rattus norvegicus 81 Ogfod1 ENSRNOG00000019288 ENSRNOT00000026118 3 1 1 80 19 11449294 11449315 TTCAGAAAGAACTCTTGAGCCT 60 11442773 11449255 TCTTCAAATCATCGGACTGCT 60 NA Rattus norvegicus 81 Piwil1 ENSRNOG00000000934 ENSRNOT00000001238 2 1 1 80 12 31624563 31624582 CTCATTGGAAGGTGTCATGC 59 31624187 31624522 GAATACTTCCGTGACCTTGTG 59 NA Rattus norvegicus 81 Snx12 ENSRNOG00000004036 ENSRNOT00000068098 3 1 1 80 X 71120006 71120978 GAGATAGTAAGATCGTAGTACCAC 58 71119949 71119967 AGATCCCTTCATCTCCTCG 58 NA Rattus norvegicus 81 Slc35e3 ENSRNOG00000027622 ENSRNOT00000029493 2 1 1 80 7 60777609 60777627 CGGTGATCATAGCCATCCA 59 60776724 60777568 CAGTAATAGGAATCAGCGTGAG 59 NA Rattus norvegicus 81 Mob3c ENSRNOG00000037620 ENSRNOT00000067566 1 1 1 80 5 134684341 134686444 TACACGTGTTGGAGTTCCC 60 134686486 134686506 ACAAAGACTCGGAAGAGTCTC 60 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 3 3 4 80 10 24017204 24017223 CGACTATGGTTTCCAGAGGT 59 24017266 24035406 AGGATCACTTCCTTTGGCA 59 NA Rattus norvegicus 81 Gucy2g ENSRNOG00000015724 ENSRNOT00000021746 3 1 1 80 1 276215377 276215396 CCTGAATACAAACCCGACTG 59 276214702 276215335 AGATGCAGTCATACCTGCTC 60 NA Rattus norvegicus 81 Faah ENSRNOG00000011019 ENSRNOT00000015961 2 1 1 80 5 134334210 134334229 CCTTTCTCAACAGTATGCGT 58 134333018 134333475 CAGACTGGCGATACATCTC 58 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 3 1 2 60 18 17550642 17556824 TTGGTTAAGAACTCAAGCTGTG 59 17556842 17556863 AGGAAAGTCTTTATCAGCAACC 59 NA DesignNoJunction Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027518 2 2 3 84 10 15453767 15454362 GTCTGCGGAGATTAGGAGG 59 15453701 15453719 TCTGTCTTGGTTCCGAGTC 59 NA Rattus norvegicus 81 Pld3 ENSRNOG00000018390 ENSRNOT00000057177 2 1 1 80 1 84350216 84350234 GGTTCCTGTTGAGGAACCT 59 84350067 84350172 CAACGGGCTTTCTTCTCTG 59 NA Rattus norvegicus 81 Rab44 ENSRNOG00000001869 ENSRNOT00000002553 3 1 1 81 20 6409160 6409178 TTCCTTCGGTGAGTGTAGC 59 6409222 6410116 CTGCATCTTAAGTGACCGAG 59 NA Rattus norvegicus 81 Hoga1 ENSRNOG00000029501 ENSRNOT00000049914 1 1 1 107 1 261307717 261308389 CACTACACCAAGGTTGCTG 59 261308460 261308478 CTGAGACAATGTGACCACG 59 NA Rattus norvegicus 81 Tbc1d30 ENSRNOG00000023951 ENSRNOT00000024679 2 1 1 80 7 63362465 63366541 GTGTACATAAGAGCAGACAAAGG 60 63362407 63362425 AAGATGGTTGATCACCGGA 59 NA Rattus norvegicus 81 Mtnr1b ENSRNOG00000008972 ENSRNOT00000011883 2 1 1 92 8 14373621 14373639 CATTGTCACCACAGCTGTG 60 14363108 14373567 AATAAATTACCTGCGTTCCGC 60 NA Rattus norvegicus 81 Camta1 ENSRNOG00000018602 ENSRNOT00000066120 3 1 1 80 5 168155454 168156692 TACAAGCAGCTGACATGGA 59 168154426 168154445 TTTGCTCTGGATGAGGATGG 60 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000072207,ENSRNOT00000075851 3 2 2 60 10 70399519 70399538 TGTCACTCACTTCTGTGAGG 59 70399560 70399579 CACTTCCATGAATTTGCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 3 1 1 61 10 14021314 14021914 CTAGAGCCTTCGGTGAGAC 59 14021271 14021289 GGCAAAGATGATTTGCTGC 58 NA DesignNoJunction Rattus norvegicus 81 Cdc25c ENSRNOG00000024008 ENSRNOT00000037368 2 1 1 80 18 27531988 27532006 CAGAGTGTGATCGAGAGGT 59 27531285 27531945 TAAGGCTCCCAGAATGTGTC 60 NA Rattus norvegicus 81 Dppa5 ENSRNOG00000000199 ENSRNOT00000000215 2 1 1 90 8 85712451 85712545 AAATCTCTGTTTGGCCCAC 58 85712379 85712400 CGGAAGATTCCAGAATCTTCAG 59 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 2 2 2 80 2 1446266 1446781 AACTTCAGTGGCTTCTAGAC 57 1446822 1446842 CAATGAGCGTGAGAATATGTG 58 NA Rattus norvegicus 81 Lrrc10 ENSRNOG00000049607 ENSRNOT00000073117 1 1 1 60 7 60087934 60087952 TCAGAACCATCTGGCTCTC 59 60087976 60087994 ATGTGAAGCAACACTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 2 2 2 82 9 16819536 16819555 GAAAGGAGAACATAGCACCC 58 16819262 16819491 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 Pfkl ENSRNOG00000001214 ENSRNOT00000001625 1 1 1 80 20 11412845 11412863 ACCATCAGCAACAATGTCC 59 11412906 11413292 GTCACAACTCTCCATTGCAG 59 NA Rattus norvegicus 81 RGD1561410 ENSRNOG00000023774 ENSRNOT00000051577 2 1 1 60 7 64293505 64293527 ATAAGAGACCAGATGTCCTTGAG 60 64293547 64293565 CTGGCTTTGCTCTCATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Proca1 ENSRNOG00000023381 ENSRNOT00000037048 1 1 1 80 10 65454863 65465802 AGATACCCGAGAACTGATATAACC 60 65465839 65465859 CATATCACTGCTGGATTCCAC 59 NA Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 2 2 2 80 1 126178006 126180607 ATGGGATTCTTAGGCCCAG 59 126177944 126177962 CATTTCCACCAGCTAGTCG 58 NA Rattus norvegicus 81 Mir181c ENSRNOG00000035569 ENSRNOT00000053692 3 1 1 68 19 25290297 25290315 GAACTTGCCAAGGGTTTGG 60 25290247 25290265 TCGATGGTTTGTCTGAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phc2 ENSRNOG00000006004 ENSRNOT00000067912 1 1 1 80 5 146924083 146924579 TACCTGCAAGAATCCAAAGAG 58 146924621 146924639 CTTGTAGGCAAAGTCCACC 59 NA Rattus norvegicus 81 Tns2 ENSRNOG00000010588 ENSRNOT00000074212 2 1 1 80 7 143720197 143720216 CAGCATCACTTTCTCTAGCA 58 143720357 143720468 AAACCAAAGATCTTGGAGGTG 59 NA Rattus norvegicus 81 Gas2l2 ENSRNOG00000047546 ENSRNOT00000071218 1 1 1 80 10 70643029 70644033 CTCATCTTCATCCGGATCCT 59 70642968 70642987 ATCCAGATAATGACCCAGCG 60 NA Rattus norvegicus 81 Sumo3 ENSRNOG00000038489 ENSRNOT00000001637 2 1 1 83 20 11729713 11729732 TGTCAATGAGGCAGATTCGA 60 11727752 11729667 CATCCTCCATCTCCAGCTG 60 NA Rattus norvegicus 81 Tmem240 ENSRNOG00000042211 ENSRNOT00000068062 2 1 1 64 5 173184008 173184029 ACCATGATCTTCATGATTCTGG 58 173184325 173184343 TTCATGTCCATCAAGCACG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102555083 ENSRNOG00000050661 ENSRNOT00000074262 1 1 1 80 7 117975594 117978076 AAGTGATCACTCAGAATGCA 57 117975533 117975552 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 1 2 2 80 16 6980726 6981070 GAAAGTGGTGGAACAAGAAGG 60 6981303 6981321 GGCAGGATGATGGTAGGAG 59 NA Rattus norvegicus 81 RGD1561871 ENSRNOG00000030441 ENSRNOT00000046453 3 1 1 85 7 63352441 63352459 TGACAAGAAAGCTGAGGCT 59 63352508 63352665 GAGGTTCACTGAGGTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 1 2 2 80 8 82272012 82272936 CTACTAACAAGGAGCACGC 58 82272980 82272998 CAATGGCACATCCTGATGG 59 NA Rattus norvegicus 81 F8 ENSRNOG00000031197 ENSRNOT00000045926 2 1 1 81 18 387651 389691 GGAACCAGATGATGTCAGAC 58 387589 387607 TTCTCCGAGATGTACCAGC 59 NA Rattus norvegicus 81 Wdr3 ENSRNOG00000019670 ENSRNOT00000026726 3 1 1 80 2 202459551 202459572 CATGCCTTGTGAATATGCTCTC 60 202457790 202459513 ATATTTCCTGTCTTTGTCCCGA 60 NA Rattus norvegicus 81 Cntrl ENSRNOG00000022015 ENSRNOT00000007776 2 1 1 80 3 14323226 14323246 AAAGCATGAGGAGATCAACAG 58 14323288 14327748 GCTTTCATATGGGACTGCT 58 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 3 2 2 80 4 9754836 9756517 CACTAAGGACGCAAGATCTG 59 9756560 9756578 GAGCAGCCGATACTATTGG 58 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312,ENSRNOT00000032273 3 2 2 116 14 44905069 44905089 CATGAAGATCACTTGGTACGT 58 44905165 44908619 TAGTTATGACTCTGCCGTCTC 59 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294,ENSRNOT00000078846 1 2 2 80 7 117150459 117150546 CCCATGAGGAGAAGATCCAG 59 117150398 117150417 AATACTTGTGCAGCTTGACG 59 NA Rattus norvegicus 81 Ddx52 ENSRNOG00000002612 ENSRNOT00000003600 1 1 1 80 10 71254928 71259862 GATGACTGCAGACGTTCCT 60 71259905 71259924 TCTTGAAGCTTTGCTTCCAC 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311,ENSRNOT00000089310 3 2 2 80 17 15772424 15772444 TCTTCTATCTACCGCTTCCAC 59 15772486 15774794 AGGCTTTGTATCCCACTCC 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 3 3 3 80 13 56603696 56604296 AGAACAAGAGACATGTTTGGC 59 56604335 56604356 CTGTCCTTCACTTTGAATGTCC 60 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181,ENSRNOT00000085464 3 2 2 80 12 32598820 32601181 CACTATCCAGATCCTGTCCC 59 32601223 32601242 ATGGTCACCTTCTCATCCAG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089428 2 1 18 128 1 43508656 43508674 AGTTCTGCATCCCAACCTC 60 43508766 43516735 CTACTGACTGAGGCTCCTG 59 NA Rattus norvegicus 81 Mapkapk3 ENSRNOG00000014832 ENSRNOT00000020065 2 1 1 80 8 116014246 116014518 GGATCAATCAATCGATGGAGG 59 116014186 116014204 CATCCCAGTGGTCTTTGTC 58 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000071463,ENSRNOT00000075728 1 3 3 85 2 235678555 235680983 TTGATGGAGAACAGGGACTC 59 235681031 235681049 AGGAAGTCCGATTCCTCCT 60 NA Rattus norvegicus 81 Csnka2ip ENSRNOG00000021791 ENSRNOT00000037345 1 1 1 60 11 1437258 1437277 TGGTATTCAGTCCCAAACCC 60 1437217 1437236 GGAGCAAGAGGAAGAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnka2ip ENSRNOG00000021791 ENSRNOT00000037345 3 1 1 60 11 1437257 1437276 GGTATTCAGTCCCAAACCCA 60 1437216 1437235 AGGAGCAAGAGGAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbx2 ENSRNOG00000049215 ENSRNOT00000072534 3 1 1 81 10 108136072 108137530 CTCCAAGCTCAAGGAACCA 60 108137574 108137593 GGAAGAGGAGGAAGATGTGG 60 NA Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 1 2 2 80 18 25649071 25650398 CACAATTTGCTGCTGAGGA 59 25650442 25650460 TTGAGCAAGACAGCTTACC 58 NA Rattus norvegicus 81 Cdc42ep1 ENSRNOG00000008517 ENSRNOT00000011270 1 1 1 150 7 120068070 120068088 CTTTGATAGCACTCCGGCT 60 120069569 120069587 TCGGTCTTGAGAATGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC689664 ENSRNOG00000049674 ENSRNOT00000047230 1 1 1 80 19 28265641 28265663 CAACTTAGAGATGGAGAACACTG 59 28265703 28266340 AGCAGGTTGCTAGAGAAGG 59 NA Rattus norvegicus 81 Olr812 ENSRNOG00000005407 ENSRNOT00000007163 3 1 1 60 4 72481071 72481089 TGTGAAATCCTGTCTGTCC 57 72481113 72481131 TGACAATTTGGTTGAGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000087528,ENSRNOT00000026716 2 2 2 70 9 17689237 17689255 CTATGTCAGAGGAGCCGTC 59 17688192 17688210 TCATCTTCTGGATTGCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Naglt1 ENSRNOG00000000590 ENSRNOT00000057218 1 1 1 81 20 45096839 45098249 GGATACAGGTGGGAACGTC 60 45096776 45096794 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Naglt1 ENSRNOG00000000590 ENSRNOT00000057218 2 1 1 83 20 45096841 45098251 CTGGATACAGGTGGGAACG 60 45096776 45096794 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 1 2 2 80 7 77159281 77159302 GTCTGATACCTCAGAGGAAGAC 60 77159129 77159241 GGTGGAGTCAAACAGAATGC 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000088284 1 1 2 109 16 3762776 3764793 TCACACCCAGAAAGCTCTC 59 3762096 3762115 AATAATCCTCCTTCTCCGGG 59 NA InUTR Rattus norvegicus 81 Bod1l1 ENSRNOG00000050437 ENSRNOT00000070998 2 1 1 80 14 73762127 73762147 AAGTGCATAGCCAAAGTACTG 59 73762188 73762287 CACTTATTTCCTGGGCTCCT 60 NA Rattus norvegicus 81 Trove2 ENSRNOG00000003434 ENSRNOT00000004701 1 1 1 80 13 60557266 60557287 GTCACTCATCTGATTGAAGAGC 59 60556593 60557230 CTTCCATACCTCTTTAGACTTCAG 59 NA Rattus norvegicus 81 Bpifb6 ENSRNOG00000013371 ENSRNOT00000017876 3 1 1 80 3 149392607 149394113 CTGGACAGTTTATTGAGCCTG 59 149394858 149394877 AGTGATGAAGCCAGTTAACG 58 NA Rattus norvegicus 81 Cacng8 ENSRNOG00000057848 ENSRNOT00000078444 1 1 1 104 1 64333673 64334477 GTACCTGCTCCGAGTAGTC 59 64333587 64333605 GATTTGTAGACGCGAGAGG 58 NA Rattus norvegicus 81 Tas2r143 ENSRNOG00000026817 ENSRNOT00000031943 2 1 1 60 9 118332528 118332549 ACCCACATTGATCTTCATTGTC 59 118332569 118332588 ATTCTGCAACATAGAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2c2ap ENSRNOG00000022247 ENSRNOT00000060012 1 1 1 159 16 21038774 21038792 GTCACATAGAGGTGACCGG 60 21038236 21038652 TAAGCACAGAACTGACCCTG 60 NA InUTR Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 2 3 3 80 1 214154583 214155040 AGAAGCTTCAGTTGGAATACTG 59 214154524 214154542 AGTCAGGTTTCACCCTGAG 59 NA Rattus norvegicus 81 Spred3 ENSRNOG00000051915 ENSRNOT00000083817 2 1 1 87 1 88110108 88110543 CTCAGCCAGAATCCTCCTC 59 88110039 88110058 ATACTTAGGGCAGACAAGGG 59 NA Rattus norvegicus 81 Sh3bgrl3 ENSRNOG00000015967 ENSRNOT00000021734 2 1 1 80 5 152357946 152358475 GGCTCTCGTGAAATCAAGTC 59 152357885 152357904 GTCCACTAGCTGGTATTGGA 59 NA Rattus norvegicus 81 Hid1 ENSRNOG00000003464 ENSRNOT00000004718 1 1 1 80 10 103907018 103907836 TCGTGAAGAGGACTTCCAG 59 103906956 103906974 TTGGGAAGGTAGGTCTGGA 60 NA Rattus norvegicus 81 Hdac10 ENSRNOG00000031915 ENSRNOT00000055865 3 1 1 80 7 130105698 130105716 CTGATGCAGACACAGTTGG 59 130105450 130105654 CATTTCCCATCCCAACCTG 59 NA Rattus norvegicus 81 Rnd3 ENSRNOG00000004624 ENSRNOT00000006111 2 1 1 82 3 36648992 36649010 CCCAGATTCTGATGCTGTG 58 36646370 36648949 CACCTTTCCACTTCTTTAAGAC 57 NA Rattus norvegicus 81 Glud1 ENSRNOG00000057367 ENSRNOT00000083446 3 1 1 81 16 10690552 10690572 TCTAAATCACGTCAGCTATGG 58 10690615 10691544 CTCTTGAACGGACATGAGC 59 NA Rattus norvegicus 81 LOC102553002 ENSRNOG00000031459 ENSRNOT00000006118 1 1 1 86 1 65701528 65701546 CAGTTATCTCCCAGCTGGA 59 65694792 65701479 CAAGAATCCAACCTGGATGG 59 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000083046,ENSRNOT00000085609 1 2 2 80 8 117140431 117140449 GAGCAACACCTATGAGCAG 58 117140493 117140641 ATTACTAGCACCTGACCCT 57 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 3 2 2 80 12 40526508 40527397 TGATGGATAAGGCAGTGGT 58 40527441 40527459 CTTTGAGGTCCTGGATCCT 58 NA Rattus norvegicus 81 Mrps18a ENSRNOG00000019511 ENSRNOT00000026499 3 1 1 80 9 17241466 17241486 GTCTGTTCCCAAATCACAGAC 59 17238718 17241426 GAGTCAGATAGCGATTGAGCT 60 NA Rattus norvegicus 81 LOC364556 ENSRNOG00000032995 ENSRNOT00000049187 3 1 1 80 16 28117900 28121276 TATAGACAAAGACTCGATGGAC 57 28117841 28117860 TCAGCCTTTAGTTCACAACC 58 NA Rattus norvegicus 81 Cplx4 ENSRNOG00000016928 ENSRNOT00000022718 2 1 1 80 18 61657434 61669855 GCTTCCGAAGAGTGAAATGG 59 61657373 61657391 ATCTTTCGGAGATCCTCGG 59 NA Rattus norvegicus 81 Upk2 ENSRNOG00000043324 ENSRNOT00000016303 3 1 1 83 8 48773663 48773682 ATCCTACCGAGTACAGAAGG 58 48773234 48773617 GACTCCATGTTTCTTCGGG 58 NA Rattus norvegicus 81 Slc7a4 ENSRNOG00000001874 ENSRNOT00000002560 1 1 1 80 11 87446960 87447261 AAACAAGACACTTTCCAGATCC 59 87446901 87446919 CTTCAGCATGAGGCAAAGG 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 3 2 2 122 18 64015930 64015948 ACACGTTCCTTCATCAACC 58 64033405 64040276 ACACATGATCTCTGAAGCC 57 NA Rattus norvegicus 81 Lrrc73 ENSRNOG00000039856 ENSRNOT00000061185 2 1 1 81 9 17113103 17113121 CATGTTGGGTGATGAAGCC 59 17112720 17113059 TGTTAGCTCCTTCAGACCAG 59 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 1 2 2 80 8 22944403 22944424 GACGAGATCTCAGAGAATCTCC 60 22944463 22944827 CATCTTGGTAAGAACCTTGCG 60 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 2 2 2 80 8 22944404 22944424 ACGAGATCTCAGAGAATCTCC 59 22944464 22944828 TCATCTTGGTAAGAACCTTGC 58 NA Rattus norvegicus 81 RGD1307916 ENSRNOG00000042494 ENSRNOT00000064853 2 1 1 96 4 156944580 156944598 CAGATGCCGATGTTCTCTG 58 156824500 156944520 CTGAAGGAGACTTCTTGCC 58 NA Rattus norvegicus 81 Txnl4b ENSRNOG00000021379 ENSRNOT00000034676 1 1 1 155 19 42103246 42104655 AAGTGGATTATGGGTCGCC 60 42103109 42103130 CGTATTTGGGTATGTTCTTGGG 60 NA Rattus norvegicus 81 Txnl4b ENSRNOG00000021379 ENSRNOT00000034676 2 1 1 156 19 42103247 42104656 AAAGTGGATTATGGGTCGC 58 42103109 42103129 CGTATTTGGGTATGTTCTTGG 57 NA Rattus norvegicus 81 Tmem181 ENSRNOG00000018158 ENSRNOT00000068457 1 1 1 80 1 47193346 47193912 CTACAATGACCCTTTCTTCCC 58 47193954 47193972 AGAGACTGGAAGAAGTCGT 58 NA Rattus norvegicus 81 Nrp2 ENSRNOG00000031232 ENSRNOT00000042562 2 1 1 80 9 69578110 69579675 GGAGTATCAGATCGTATTCGAG 58 69579716 69579734 GTGCTTATCCGAATGTCGT 58 NA Rattus norvegicus 81 Nrp2 ENSRNOG00000031232 ENSRNOT00000042562 3 1 1 80 9 69578112 69579677 AGTATCAGATCGTATTCGAGGG 59 69579718 69579736 CGGTGCTTATCCGAATGTC 59 NA Rattus norvegicus 81 Cspg5 ENSRNOG00000020833 ENSRNOT00000028278 3 1 1 80 8 118341344 118347428 TTGTCTGTCAGGATGACCC 59 118347469 118347490 TAAAGGACTCTTCCTCCTTCAG 59 NA Rattus norvegicus 81 Tshz1 ENSRNOG00000016246 ENSRNOT00000021750 3 1 1 60 18 80864158 80864178 CATCAAGAAACAACCAGACTC 57 80864118 80864137 AGGCTCCTTCTTCTCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042384.1 ENSRNOG00000056271 ENSRNOT00000089929 1 1 1 96 X 154548224 154548242 TACAGGAATTTCACACGGC 58 154548299 154548470 GGTTTCTTAGTTACCTTGACCT 58 NA Rattus norvegicus 81 Rpl6 ENSRNOG00000025936 ENSRNOT00000034951 3 1 1 82 12 40880915 40880933 CAGGTATTCCCGATCTGCT 59 40880756 40880871 TCTTCTCAACCTTTGTCTTGG 58 NA Rattus norvegicus 81 AABR07013302.1 ENSRNOG00000055038 ENSRNOT00000041479 1 1 1 60 2 232373301 232373322 TACATGCGAATCTACAAGAAGG 58 232373262 232373280 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 3 2 2 80 8 85503241 85503261 GCTCTACTACTTTCAAGGCAG 59 85503301 85504614 TCTTCTTCAAACTCCACTCCA 59 NA Rattus norvegicus 81 Pdlim7 ENSRNOG00000013653 ENSRNOT00000018899 2 1 1 95 17 9659530 9659548 GAATACTGAAGACTGGCGC 59 9659607 9659746 GGGTCTTGCATGAACTCTG 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354,ENSRNOT00000064751 1 3 3 81 11 34071530 34073121 CAGTTAAAGGCAAACAACATGG 59 34073161 34073181 CTTGCTTATTATGAGTCGGCT 58 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 1 1 1 93 16 9074178 9074196 GACACCAATCAATGGGACG 59 9074253 9075396 ATTCCTCCTCATGGTCCCT 60 NA DesignNoJunction Rattus norvegicus 81 Smim14 ENSRNOG00000002553 ENSRNOT00000003552 3 1 1 103 14 44440362 44447032 CTTATCAATCTGCTCCGGC 59 44454078 44454096 ATCACAGTGATGCTGATGC 58 NA Rattus norvegicus 81 Fam129a ENSRNOG00000002403 ENSRNOT00000003320 3 1 1 80 13 69023793 69023812 ATCAGGAAATGGAAGGACAG 57 69023853 69026895 CTGATAGGCCTCTTTGTTCTC 58 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000049978 ENSRNOT00000071905 3 1 1 60 2 115153064 115153084 GTTTCTTGTACACAGTGATGG 57 115153103 115153124 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tesk2 ENSRNOG00000017282 ENSRNOT00000023416 3 1 1 80 5 135657340 135657789 AACTGCTGTAATATGGACCC 57 135657830 135657850 TAAGCGGCTCATAATTTCCTC 58 NA Rattus norvegicus 81 AABR07064867.1 ENSRNOG00000051449 ENSRNOT00000082695 1 1 1 60 6 98665973 98665994 CTAATAGTAGCACTTTCCACGG 59 98665934 98665953 ACGATATCTTGGTGTGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071393.1 ENSRNOG00000046440 ENSRNOT00000072842 3 1 1 60 8 113704508 113704528 TAGGAACGGAAACATTTGAGG 58 113704468 113704486 GCATTCTGATGCCTTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562381 ENSRNOG00000029835 ENSRNOT00000040565 1 1 1 60 6 99575898 99575917 GCCCTAGATCAGGAGATCAC 59 99575857 99575876 CCAGAAGCTTCAGCATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562381 ENSRNOG00000029835 ENSRNOT00000040565 3 1 1 60 6 99575882 99575902 ATCACTGAGGTAGATCCTGAC 59 99575842 99575860 AGAGACTGCCAAAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014259.1 ENSRNOG00000042166 ENSRNOT00000068215 2 1 1 80 14 6221146 6221165 ATCCTTCCCAGAAGAGTCTC 58 6221205 6221424 CTTCCCAGTAATAGCCTATAGC 58 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 2 2 2 80 11 10021252 10022877 AAATCCAGATATGAGATCCGAG 57 10022916 10022936 ACAAGTGTATGATCCCATGTC 58 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 1 1 1 60 8 76479838 76479860 TGGGAAATAGCAGAATTTGTGG 59 76479799 76479818 TCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Ddx28 ENSRNOG00000019817 ENSRNOT00000026817 1 1 1 60 19 37989471 37989489 GGATGAAGTAGACACGCTG 58 37989429 37989447 TCCCAAGATGTAGTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 3 6 6 80 7 132140134 132140898 TACAGAACCAGAGATGATGCA 59 132140074 132140092 CTCTGCACATTCATCTGGG 58 NA Rattus norvegicus 81 Svs3b ENSRNOG00000036782 ENSRNOT00000055166 3 1 1 81 3 159084291 159084539 GATAGGAATCTATGGTGGGAC 57 159084230 159084248 GAGGAACTGGCCTTTATCG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 1 1 5 167 20 5416725 5416837 ACTTTCCCAGAGATGGGAG 58 5416966 5417160 TAGACTCCTCCTTTCCTACCT 59 NA Rattus norvegicus 81 AABR07065792.2 ENSRNOG00000048696 ENSRNOT00000048010 1 1 1 74 6 141472580 141472702 AGATGTCCAGTGTGAAGTG 57 141472524 141472542 GAGAGTTTCAGAGAAGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1223 ENSRNOG00000051138 ENSRNOT00000076963 1 1 1 60 8 41302760 41302779 GGCAACTTGAGCTTAATGAG 57 41302801 41302820 AGTACACGGGAGTATGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbd3l2 ENSRNOG00000026629 ENSRNOT00000029911 2 1 1 89 8 17928393 17929080 GCCTTTGCTAGGAAGACTC 58 17929133 17929151 GTCTTTGTCTTGCTCTGGG 59 NA Rattus norvegicus 81 Pou1f1 ENSRNOG00000000715 ENSRNOT00000000905 2 1 1 80 11 2648739 2648761 GACAGGACTTCATTATTCTGTGC 60 2648800 2657031 GTTAAAGTGCCTGCCATCAC 60 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 3 2 2 80 14 786149 786172 CATACAATCTGAACATGGGAAGAC 60 786208 786230 CCCAAATATCCCAGTAAGTGGA 60 NA Rattus norvegicus 81 Ciapin1 ENSRNOG00000016234 ENSRNOT00000021769 2 1 1 80 19 10605824 10605842 GTTGTGGATCCTGCTACTG 58 10605885 10607536 TGAGTCAATGAGATCCATGC 58 NA Rattus norvegicus 81 AC106292.2 ENSRNOG00000059017 ENSRNOT00000085226 1 1 1 60 11 65744199 65744217 AACCCAGTATCTCAGCGTC 59 65744241 65744259 ACCCTTGACAGTACAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp2 ENSRNOG00000030750 ENSRNOT00000040346 2 1 1 80 10 36402531 36402550 TCTCTAGGAAGGCCCTACAG 60 36400458 36402492 TATATCAGTGATTCCTGAGCTCC 59 NA InUTR Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 2 3 3 80 13 71112461 71112479 TCGCACAAATCAGACTCCT 59 71112522 71113430 TGTGGAGAGTCTCTTGAGAG 58 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935,ENSRNOT00000006408 2 2 2 80 3 122131288 122135817 CTCTATGTACTCGCCAAACC 58 122135859 122135878 GAAGTTCACTGTCTGTCCAG 58 NA Rattus norvegicus 81 Nbas ENSRNOG00000024503 ENSRNOT00000009779 1 1 1 80 6 38536776 38536794 GAATGGTTTGAGCCATCCC 59 38536835 38537874 GGCAAGTTTAATTTCACACTCC 59 NA Rattus norvegicus 81 Abcc10 ENSRNOG00000018863 ENSRNOT00000025598 1 1 1 80 9 17046106 17046124 TGTAGTCATCTGCATCGTC 57 17046168 17047213 AGTGCTGTAAACACCTTGG 58 NA Rattus norvegicus 81 AABR07065814.6 ENSRNOG00000060468 ENSRNOT00000071555 2 1 1 60 6 142385682 142385702 CTATTCCATGAATTGGGTTCG 57 142385642 142385660 TATGTGAGCAACCCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vkorc1 ENSRNOG00000050828 ENSRNOT00000073596 2 1 1 81 1 199339211 199340074 TGTTGTTAGGTTGCTTGAGG 59 199339149 199339167 TACAGAGAACCAGCGACAG 59 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000039868 1 1 2 80 8 4548913 4548931 TTGCTCAGGATCTCAACAG 57 4548850 4548869 GTTCCTTCAACAGGGACAG 58 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000039868 3 1 2 130 8 4548964 4548982 TACCATCAACACAGCAAGC 59 4548851 4548870 TTCCTTCAACAGGGACAGG 59 NA Rattus norvegicus 81 Lgr5 ENSRNOG00000004221 ENSRNOT00000005814 1 1 1 80 7 58461318 58461478 TGGAGAGCCTGACTTTAACTG 60 58461258 58461279 GCACTTGGAGATTAGGTAACTG 59 NA Rattus norvegicus 81 Lgr5 ENSRNOG00000004221 ENSRNOT00000005814 3 1 1 80 7 58465739 58467047 CCAACCTCAAGGAACTAGGA 59 58465678 58465697 TAAGAGAAGGGTTGCCTACG 59 NA Rattus norvegicus 81 Dmrtc2 ENSRNOG00000020109 ENSRNOT00000027242 3 1 1 82 1 81738799 81738817 GATCTCGCTCAGTACTGAC 57 81738863 81739616 TATCAGAGTTGAGCACGTG 57 NA Rattus norvegicus 81 Lypla1 ENSRNOG00000008320 ENSRNOT00000011312 1 1 1 80 5 14564639 14564659 GTAAATCCAGCCAATGTAACC 57 14560961 14564599 CTTGACATCCATCATTTCCTG 57 NA Rattus norvegicus 81 Urod ENSRNOG00000018211 ENSRNOT00000024719 1 1 1 80 5 135856444 135856462 ACGTGTTGGAAAGACAGTG 58 135855649 135856401 AGTCGACCAATCTCTTCCTC 59 NA Rattus norvegicus 81 Olr1012 ENSRNOG00000054207 ENSRNOT00000074567 1 1 1 60 7 7069497 7069515 AGCATCACTGACCAAAGGA 59 7069538 7069557 GGGATTCATCATAGGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir301b ENSRNOG00000040402 ENSRNOT00000062155 3 1 1 61 11 88129437 88129457 TCTGACTAGGTTGCACTACTG 59 88129478 88129498 CCAGATGCTTTGACAATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc71l ENSRNOG00000039207 ENSRNOT00000060006 2 1 1 81 6 51662319 51662337 GGAGAAGGTGGTGTACTCG 60 51662382 51662400 CATGAAGAGCTTGAAGGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fan1 ENSRNOG00000023985 ENSRNOT00000031067 3 1 1 80 1 125193032 125193702 GGAGACGTTAAGCATGTGAC 59 125192971 125192990 ACCCTCAATGACAAACACAG 58 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 1 3 3 80 4 22104869 22106909 GTAGCTGTGATCATGCTCC 58 22106953 22106971 CCGTCTCTAGGAGCTTCTC 59 NA Rattus norvegicus 81 Gabra6 ENSRNOG00000003569 ENSRNOT00000004877 1 1 1 80 10 27848523 27856611 ATTGTTGTGCACTCTGACTC 59 27848462 27848482 CTCAGAAGATGGAACGATTGG 59 NA Rattus norvegicus 81 Gabra6 ENSRNOG00000003569 ENSRNOT00000004877 3 1 1 80 10 27848525 27856613 AGATTGTTGTGCACTCTGAC 59 27848464 27848483 CAGAAGATGGAACGATTGGC 59 NA Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000087792 3 1 2 81 1 166670094 166670581 GTGGTTAATTCAGCAGGTGAC 60 166670033 166670054 CTCATACTGGTCATCAAATGCA 59 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000048764 ENSRNOT00000058323 1 1 1 91 3 19141172 19141364 AGTATCACAGTCTTAGTGTCCAG 59 19141415 19141433 GTGATGGTGACCTTCTCCC 60 NA Rattus norvegicus 81 G6pc3 ENSRNOG00000020902 ENSRNOT00000028375 3 1 1 82 10 90134575 90136377 TTCAAGTGGTTTCTGTTTGGAG 59 90136419 90136438 TGAATCTGGACTGGAGTCTG 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 3 3 3 80 12 41354905 41355016 GATCATCAAGGGAGGATCCA 59 41355059 41355077 GAGCTGAGGAACACTACGA 59 NA Rattus norvegicus 81 Baz1a ENSRNOG00000006828 ENSRNOT00000009080 1 1 1 80 6 75810848 75812569 TAGGAGCCATCAAGGTTACAG 59 75810788 75810808 TTTCCTCACTTAACAGCTCGT 60 NA Rattus norvegicus 81 Lrrfip1 ENSRNOG00000019892 ENSRNOT00000050191 3 1 1 84 9 98245160 98245178 CACACTGAAGGACATGCTG 59 98245224 98247486 CTCGAACTCCTTGTTCTTCTC 59 NA Rattus norvegicus 81 LOC100911926 ENSRNOG00000047388 ENSRNOT00000070942 3 1 1 80 10 111734920 111734941 CTGCTCATTCCCATTACCC 58 111734982 111735003 ATCTCTGTCAATAAATGGAGGC 58 NA Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695,ENSRNOT00000024526 1 2 2 152 9 100839075 100839093 ATTTGTACGCAAGACCCTG 58 100839837 100839855 AAGAATGCAGCCTTCAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Slx4 ENSRNOG00000024445 ENSRNOT00000033919 1 1 1 80 10 11792451 11793237 CAACATGTGAACAGATGCC 57 11793281 11793299 ACATATTGGGCAATCAGGG 58 NA Rattus norvegicus 81 Slx4 ENSRNOG00000024445 ENSRNOT00000033919 3 1 1 80 10 11792450 11793236 GCAACATGTGAACAGATGC 58 11793280 11793298 CATATTGGGCAATCAGGGA 57 NA Rattus norvegicus 81 Hoxc8 ENSRNOG00000028619 ENSRNOT00000031404 3 1 1 60 7 144605483 144605502 ATGTTTCCATGGATGAGACC 58 144606865 144606883 GGCTGTAAGTTTGTCGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 1 1 2 95 4 39521393 39521411 AGTCGAGATGTCGAAGCAG 60 39522599 39526701 TACAGCTTTGTTCTTCTTGGTC 59 NA Rattus norvegicus 81 Sparcl1 ENSRNOG00000015093 ENSRNOT00000020357 2 1 1 80 14 7019020 7019042 CTACCACATGTATGTGTATCCTG 59 7019080 7019640 GAATGTGTCAAGATCCTGTCC 59 NA Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000072750 1 1 2 92 1 81396021 81396041 GCTGTCATTTCGTCTTAAGGG 59 81396567 81396585 CAGTCACATCACCCTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000072750 3 1 2 97 1 81396021 81396041 GCTGTCATTTCGTCTTAAGGG 59 81396572 81396590 TAAGGCAGTCACATCACCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07005027.1 ENSRNOG00000050468 ENSRNOT00000071333 1 1 1 112 1 175586383 175586401 GTCTGAGCCTCCTTACCAG 59 175586244 175586310 CTCTAGAATCTCGTTTCTTGGG 58 NA Rattus norvegicus 81 Frmd6 ENSRNOG00000007329 ENSRNOT00000009610 1 1 1 80 6 93351119 93351137 AAGTGAGCCCAGAGATGTG 59 93351181 93354131 CAATTAACCCTGAGTGCCC 59 NA Rattus norvegicus 81 Frmd6 ENSRNOG00000007329 ENSRNOT00000009610 3 1 1 80 6 93354206 93356051 CTTCCACAGACGATATGTCGA 60 93356092 93356111 CTGGTACAGTCTGATGTCGT 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 2 2 2 80 7 15785799 15786680 AGAGAAATCGGAGAATTCAGGT 59 15786721 15786739 TCTGTTGGTGGGTCTTTCC 60 NA Rattus norvegicus 81 Rn60_16_0006.1 ENSRNOG00000050746 ENSRNOT00000070877 1 1 1 129 16 520237 520255 CTTGAGGTGATAGCAGCCA 60 517408 517426 CAGCATAGCCTTCAGTCCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000020775,ENSRNOT00000074479 2 2 7 62 19 15139938 15139956 ATCCTGGTGTTTCTTGCAG 58 15143733 15143751 GTCCACTACAGGTGGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000020775,ENSRNOT00000074479 3 2 7 63 19 15139937 15139955 GATCCTGGTGTTTCTTGCA 58 15143733 15143751 GTCCACTACAGGTGGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Fktn ENSRNOG00000028129 ENSRNOT00000036799 3 1 1 80 5 70547443 70552380 GCATTCCTTCAGCAGTACG 59 70552422 70552442 TAGTTGCAGTAACTCCTTTGC 59 NA Rattus norvegicus 81 Bmp5 ENSRNOG00000010917 ENSRNOT00000014846 3 1 1 80 8 82943410 82947808 TCCAGACTCTGGTACACCT 59 82947850 82947870 CCGAGATGGCATTTAGTTTGG 60 NA Rattus norvegicus 81 Gfod1 ENSRNOG00000014007 ENSRNOT00000018739 1 1 1 82 17 23923487 23923505 AGGATGTGGACTTGGTGTG 60 23824735 23923441 ATTCTTGCCTATGCCCAGG 60 NA Rattus norvegicus 81 AABR07054456.1 ENSRNOG00000014425 ENSRNOT00000019331 3 1 1 107 3 154437837 154437855 TCAATTGCTTAAGCTGGCC 59 154437926 154437961 AAGGTGGTGAAGAGGACAG 59 NA Rattus norvegicus 81 Rgsl2h ENSRNOG00000026940 ENSRNOT00000025544 3 1 1 96 13 71282580 71282598 TAGCAGAAGACCAGAACGG 59 71282296 71282520 GTTGCATATCAGAGCCCTG 58 NA Rattus norvegicus 81 Ppp3r2 ENSRNOG00000005368 ENSRNOT00000007290 1 1 1 80 5 64946101 64946122 CGGATATCCTTTGAAGAGTTCC 59 64945785 64946061 ACCGTGATCTACAAACACGA 60 NA Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 3 2 2 80 1 250621267 250621286 GATGGGTCAAATCGAATGGC 60 250615358 250621225 TCTCTTCAAGACCTCCAACC 59 NA Rattus norvegicus 81 Rdh12 ENSRNOG00000056553 ENSRNOT00000089162 2 1 1 80 6 102392964 102392984 CTGGTTATCTTGGTACTGCTC 58 102393026 102394695 ACCAGCAAAGAACTTCCTG 58 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758,ENSRNOT00000056430 1 2 2 80 9 111855478 111855498 GAGTGTATTCATCTTCTGGCT 58 111855537 111859811 AGCTGTATCTCCCATAATTCAG 58 NA Rattus norvegicus 81 Tfap2a ENSRNOG00000015522 ENSRNOT00000041960 2 1 1 81 17 24655207 24656464 TTCAGCTATGGACCGTCAC 60 24656506 24656527 GTAGGGAGATTGACCTACAGTG 60 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 1 2 2 80 14 66742819 66744688 CACTAAAGAGGAAATGCTGGAC 59 66744729 66744747 TCTTCCTTGAGGACAGGGT 60 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 1 1 1 60 1 5381531 5381555 GAAGTATCCAGAAGGAAATTCATCC 60 5381573 5387077 AGTACTGAATCGCCACACC 60 NA DesignNoJunction Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 1 2 2 80 X 16180433 16184451 ATCAGCACAGATCAGGGAG 59 16184494 16184513 GAGGAAAGCAAACAGGAGAG 59 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552,ENSRNOT00000088705 2 2 2 80 8 117535933 117536102 AATCACTAGAGATGTCAGAACG 58 117536142 117536161 TGATTATTCGCTCTCCATCC 57 NA Rattus norvegicus 81 Pcnx ENSRNOG00000007459 ENSRNOT00000010022 2 1 1 80 6 105711494 105711512 GAAGAACCCAGAAGACCCT 59 105711556 105714066 TGTAAACGCTCACTTACGG 58 NA Rattus norvegicus 81 Alox15 ENSRNOG00000019183 ENSRNOT00000026038 3 1 1 80 10 56955182 56955370 CAGATCATGAATCGGTACGTG 59 56955122 56955142 CAGTTCATAGTCGTCTTGCAC 59 NA Rattus norvegicus 81 Lrrc34 ENSRNOG00000027935 ENSRNOT00000031730 3 1 1 80 2 116375712 116377260 AGAAATCGAGAAGCGACCC 60 116377298 116377322 GTTATCCTTTGTCCTGAATCTAAGC 60 NA Rattus norvegicus 81 AABR07064667.1 ENSRNOG00000004163 ENSRNOT00000005511 2 1 1 60 6 89932798 89932819 ATGGTCTGGAATTCTATGTGGT 59 89932759 89932778 CATTTCTTGTCTGCAATGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 1 2 2 81 11 27386814 27386832 TTTGGGAGATGACTCGGAG 59 27386877 27389030 CAGTTTCACCTCACAGTCC 58 NA Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 3 1 1 62 9 92925115 92927120 CTTCTTCCTTGCTCAGCTG 59 92927146 92927164 GAGTCTTCGTAGAGCACAC 58 NA DesignNoJunction Rattus norvegicus 81 Triml2 ENSRNOG00000028299 ENSRNOT00000033652 2 1 1 80 16 52123075 52123093 GCCTCCAGAAGATCATCAC 58 52119903 52123032 AATAGCACTCTGCATTCTGG 58 NA Rattus norvegicus 81 LOC100910170 ENSRNOG00000049242 ENSRNOT00000047899 3 1 1 60 7 16035838 16035858 TTTCTCCTTGCTATCATGTCC 58 16035798 16035817 TGTAGTGCAGAGGTTTACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000088320 1 1 2 80 8 55505667 55506231 GGTGTGCTGTAGGTATGGT 59 55506274 55506293 GCTAATTCCCAGTTCTCCCA 60 NA Rattus norvegicus 81 Golm1 ENSRNOG00000018400 ENSRNOT00000037597 2 1 1 80 17 5398885 5399784 CATTAGAGACCTTCAAGACCA 57 5399825 5399844 TTCTGGAACTGGAAGATGTC 57 NA Rattus norvegicus 81 Trpc2 ENSRNOG00000020188 ENSRNOT00000048172,ENSRNOT00000045726 3 2 2 80 1 167189409 167189429 GTCATGGTGATTGTGCTACTC 59 167189471 167190143 TACATCAGCATCGTCCTCG 59 NA Rattus norvegicus 81 Ptprk ENSRNOG00000047605 ENSRNOT00000020988 2 1 1 80 1 17472545 17472565 ACTTACTACAGCACATCAACC 58 17470435 17472503 GGCCTTCAAAGAAGCTCTC 59 NA Rattus norvegicus 81 Cep350 ENSRNOG00000003882 ENSRNOT00000005235,ENSRNOT00000005195 2 2 2 80 13 73585022 73588232 TCAGTTCGCAGATGATACCT 59 73584961 73584980 TTTCGTACTGGTTTGACCAC 59 NA Rattus norvegicus 81 LOC100911585 ENSRNOG00000047890 ENSRNOT00000071593 3 1 1 80 9 20241965 20241985 TCATTACTCTGCAAGATTGGC 59 20242027 20242742 GATGTCTGTGAGGTCCCTG 60 NA Rattus norvegicus 81 Synj2bp ENSRNOG00000006399 ENSRNOT00000009122 2 1 1 80 6 105231240 105240467 GATCCTCTCGGTAAATGGC 58 105231178 105231196 GCATATCCTGCATTACGGA 58 NA Rattus norvegicus 81 Aspn ENSRNOG00000050431 ENSRNOT00000074041 2 1 1 80 17 15511741 15511759 ATTTGTTTCCGACATGCCC 59 15509656 15511702 GAACTGATGTCAAACCTAGATCAG 59 NA Rattus norvegicus 81 LOC691828 ENSRNOG00000048425 ENSRNOT00000073779 1 1 1 60 6 140880045 140880063 AACTTGTCGAGTCTGGAGG 59 140880003 140880021 GCACAGGAGAGTTTCAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs8 ENSRNOG00000017446 ENSRNOT00000023526 1 1 1 90 1 219143048 219143506 CCGCTACGTACAAGTATGTG 59 219142977 219142995 CACATCAGAATCCGAGCTG 58 NA Rattus norvegicus 81 Olr982 ENSRNOG00000002333 ENSRNOT00000003174 3 1 1 60 7 4216465 4216483 CTATGACCGTTATGTGGCT 57 4216423 4216442 CCTGTTGCTCATTATTGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tectb ENSRNOG00000015671 ENSRNOT00000021041 2 1 1 80 1 275958845 275960395 CAGTCAGAGTACAAGCCTCC 60 275960437 275960456 CTGGTTCTTCACAATCACGG 59 NA Rattus norvegicus 81 Col7a1 ENSRNOG00000020579 ENSRNOT00000027994 2 1 1 80 8 117701918 117702166 GTGACTGCTTACACTGAGAC 58 117702206 117702227 CAAAGTCACTGAGTTGACAGAG 59 NA Rattus norvegicus 81 Slc22a13 ENSRNOG00000056476 ENSRNOT00000078303 2 1 1 80 8 127887015 127887249 ATAGCTGTCTGGTTTGTGGA 59 127886954 127886972 CAGGTAGATGTCCAGACCA 58 NA Rattus norvegicus 81 Clrn2 ENSRNOG00000027195 ENSRNOT00000022589 2 1 1 80 14 70154302 70160383 CCCAGTTTACAATCTTCCCG 59 70154241 70154259 CCAGGAAGAGGAGCAAGAG 60 NA Rattus norvegicus 81 Gpa33 ENSRNOG00000003740 ENSRNOT00000004986 2 1 1 80 13 84366457 84366476 TACTACATCTGCACCTCCAG 59 84366519 84367469 GTTCATGGAGGGAGGTCTG 60 NA Rattus norvegicus 81 Cxadr ENSRNOG00000001557 ENSRNOT00000050701 1 1 1 80 11 16859743 16859762 ACCCAGTATAACCAAGTCCC 59 16859804 16873045 GTACTTGAACTTAGCGGGTG 59 NA Rattus norvegicus 81 Ptn ENSRNOG00000011946 ENSRNOT00000016088 3 1 1 92 4 64266091 64269056 GAAGCAGTTTGGAGCTGAG 59 64266017 64266035 TTCAGACTGCCAGTTCTGG 60 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 2 1 1 67 2 25225110 25235101 GGACCCAACAGTAAAGGGA 59 25225061 25225079 CCTTTCCCAGTGATGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909936 ENSRNOG00000046925 ENSRNOT00000042551 2 1 1 86 14 514031 514801 TGAATCAAGTCCTAGGGTGC 60 514848 514868 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Sertad1 ENSRNOG00000024363 ENSRNOT00000028468 1 1 1 96 1 84293206 84295323 TGATCTGGAGGATGCTGAG 59 84295383 84295401 CTTTGATCCAACCACCACG 59 NA InUTR Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 3 2 2 80 19 14528555 14529994 GGAAGTGTAATATGGATCAGGC 59 14530035 14530053 CACACTTGCACTTGTCAGG 59 NA Rattus norvegicus 81 Rnf121 ENSRNOG00000020175 ENSRNOT00000027321 2 1 1 80 1 167111078 167111097 ACTATGGAGTTCTTGAGCGA 59 167099131 167111035 CCGACTCACTGTAGAACCC 60 NA Rattus norvegicus 81 Il9 ENSRNOG00000012131 ENSRNOT00000016187 3 1 1 99 17 8558882 8558900 GCTTTGCTCTTTGGGTCTG 60 8558963 8559070 ATGATGGGTCGTCCTTCAG 59 NA Rattus norvegicus 81 Cytip ENSRNOG00000004772 ENSRNOT00000006387 3 1 1 80 3 44163243 44166032 GAAATCTGCTAACGATAGAGACTC 59 44163186 44163205 TTAAAGTCTGCAGCTTTGCC 60 NA Rattus norvegicus 81 LOC100361830 ENSRNOG00000013046 ENSRNOT00000017592 3 1 1 80 9 27129523 27129542 AATGAATCTGGACAGCTGGT 59 27123611 27129481 TAAATAGCCTTCCGTTGCCA 60 NA Rattus norvegicus 81 AABR07065438.1 ENSRNOG00000031889 ENSRNOT00000050204 1 1 1 60 6 128738644 128738663 CTGCCAAGACAAAGGTTGAG 60 128738686 128738704 TTTGTGACGGTAGCAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vhl ENSRNOG00000010258 ENSRNOT00000013727 2 1 1 80 4 145584427 145584445 GGAACTGTTTGTGCCATCC 60 145584487 145585524 TCTTTCAGGGTATACACTGGC 60 NA Rattus norvegicus 81 AC128212.1 ENSRNOG00000054355 ENSRNOT00000082247 2 1 1 122 8 130569869 130569890 TGGTTCCTGCTAGTTGTGG 60 130569765 130569783 CTCGCTCAGTAGAGTTGGG 60 NA Rattus norvegicus 81 Krt28 ENSRNOG00000011846 ENSRNOT00000044206 2 1 1 85 10 87276428 87276716 GGGAATTCATCCAAAGATGTATCC 60 87276366 87276384 GAGGACAGGACCTTACCAC 59 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 3 2 2 80 14 7204959 7204977 AACAGCTGGTTCTTTGGAC 58 7205021 7206515 GGCATACACTTTCCCTTCC 58 NA Rattus norvegicus 81 RGD1563157 ENSRNOG00000032523 ENSRNOT00000041376 2 1 1 60 6 42947379 42947397 GAGCTGTTGAAACAACTGG 57 42947421 42947439 CTTTGGCTATGCGAAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam24a ENSRNOG00000026035 ENSRNOT00000036128 1 1 1 92 1 201914120 201914140 CTAGCACTTTGCTGATAGCTG 59 201914194 201915022 CTTCCCTTGCGCATTTCAG 60 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 2 3 3 82 19 15419658 15421200 TTTCTTCAAAGGAGTGGGC 58 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Vom2r56 ENSRNOG00000039136 ENSRNOT00000049266 2 1 1 80 7 19077763 19078174 GATGCATGCAGGTAAATGAC 58 19077702 19077723 TTCCTTGATTAACAGTCACTGG 58 NA Rattus norvegicus 81 Lgals2 ENSRNOG00000008539 ENSRNOT00000011750 3 1 1 80 7 120072643 120072663 ACCTGAACATGAAATCAGGGA 60 120071713 120072602 CCAGGTTAATGGTGAAGCTG 59 NA Rattus norvegicus 81 AABR07055309.1 ENSRNOG00000046498 ENSRNOT00000051488 1 1 1 87 7 1390578 1392393 TGGTTTGAACTACAGGCTG 58 1390509 1390530 GTTGGTCATCTTATGCATATCC 57 NA Rattus norvegicus 81 Sp100 ENSRNOG00000022769 ENSRNOT00000034152 2 1 1 80 9 92698180 92704866 ATTCCAAACCACTGGAAAGC 59 92704907 92704927 CTTTATATCTACCAGCCGCAC 59 NA Rattus norvegicus 81 Mip ENSRNOG00000003132 ENSRNOT00000004223 2 1 1 81 7 2637078 2637622 CTCTTTGGGATGTATTACACTGG 59 2637663 2637681 TGCTGAAGTTCCTGGTGAG 60 NA Rattus norvegicus 81 Mip ENSRNOG00000003132 ENSRNOT00000004223 3 1 1 81 7 2637076 2637619 ACCTCTTTGGGATGTATTACAC 58 2637661 2637679 CTGAAGTTCCTGGTGAGGA 59 NA Rattus norvegicus 81 Slc9a1 ENSRNOG00000007982 ENSRNOT00000011049 3 1 1 80 5 151574175 151574196 TTGACTACTTACATGTACGCAC 59 151574233 151613831 CATGGAAACCTATCTTCATGAGG 59 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000086413 1 1 2 80 20 5107849 5107869 AAATTCCATAATGAGGGCCTG 59 5107308 5107808 CGAACCTTAACATCCTTCCC 58 NA InUTR Rattus norvegicus 81 Arglu1 ENSRNOG00000024142 ENSRNOT00000057347 3 1 2 137 16 86607389 86607407 GACAGAGACAAGCTGAGCT 59 86609772 86624238 ATTGTTCTTCAGCCAGTTTGG 60 NA Rattus norvegicus 81 Plag1 ENSRNOG00000008846 ENSRNOT00000011721 2 1 1 89 5 16794220 16794752 ATTACAAAGGCACATGGCT 58 16794149 16794167 TTCAGATGGTCTTTCCGGT 59 NA Rattus norvegicus 81 LOC100910145 ENSRNOG00000048588 ENSRNOT00000073523 2 1 1 60 2 35310756 35310774 CCAGCACTTACAACAACGA 58 35310796 35310816 GACACGACAATATTCATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387,ENSRNOT00000082422 1 2 2 84 13 83865727 83865745 AAATCACCATCCAGCACCA 60 83863680 83865679 AGGCTAAATTGGCCTGGAG 60 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 3 2 3 89 1 66237070 66237089 TAAGCCTGAAGTCATCTCCC 59 66233735 66237018 CTCATCCACTCTGGACAGC 60 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 2 1 1 60 5 58416611 58416967 AATGATACAAGGCAAGGGC 58 58416990 58417009 CCACAGGTAGTCAAGGAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr885-ps ENSRNOG00000028911 ENSRNOT00000051296 3 1 1 60 7 16010220 16010239 GGCTATCATGTCCTTTGACC 59 16010179 16010198 GATGGTGATATAGTGCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olig2 ENSRNOG00000028658 ENSRNOT00000000325 3 1 1 88 11 31389681 31389699 TGCTTAACAGAGACCCGAG 59 31389750 31390496 CCTTCCGAATGTGAATTCGA 58 NA InUTR Rattus norvegicus 81 Vcpip1 ENSRNOG00000006980 ENSRNOT00000009136 2 1 1 80 5 9233992 9243434 CAACATTAATGGGAGAAGACG 57 9243473 9243494 TATTGTAGAATACACCACCCTG 57 NA Rattus norvegicus 81 Phf6 ENSRNOG00000048650 ENSRNOT00000072527 1 1 1 80 X 158280678 158280696 TAAAGGTCTGGCGGAAGAC 59 158280472 158280636 GACCTATCTCGGTAGGAACTG 59 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599,ENSRNOT00000066302 3 2 2 80 2 24189504 24189525 AGATAGAGAACATCCACGTAGG 59 24189565 24194134 CCAGAGACTCTATGGGATGG 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000064168,ENSRNOT00000074954,ENSRNOT00000073696,ENSRNOT00000072244 3 6 6 80 13 84490856 84490874 TAGCTTCCAAACAGGGCTC 60 84490916 84491800 GATCTGCATCGTGAACTATGG 59 NA Rattus norvegicus 81 Thap4 ENSRNOG00000018351 ENSRNOT00000024794 1 1 1 80 9 100853875 100854833 AGAACACAGGTGTTGTGGA 59 100853813 100853831 TCCTGGAGATGGAATGGGA 60 NA Rattus norvegicus 81 Spint5p ENSRNOG00000014807 ENSRNOT00000051826 3 1 1 88 3 161178310 161179452 ATCTTGGAAGCAACCAACC 58 161179503 161179522 TTCACATAAGGCTGTGTCCT 59 NA Rattus norvegicus 81 Mir196a ENSRNOG00000035614 ENSRNOT00000053737 2 1 1 64 7 144584265 144584286 GTTTCATGTTGTTGGGATTGAG 59 144584310 144584329 CGACTGATGTAACTCAGGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 2 2 2 80 10 62689402 62689557 CTTCCCAGTCAAGATTGAAATCC 60 62689597 62689615 TCATCGCAACCATTGAGGT 60 NA Rattus norvegicus 81 Sdcbp ENSRNOG00000009683 ENSRNOT00000013563 3 1 1 81 5 19495824 19496467 ATTGGCTTGAAGGATGCTC 58 19496511 19496530 TAAAGGCAGGCATGATTGTG 59 NA Rattus norvegicus 81 Dcdc2b ENSRNOG00000048876 ENSRNOT00000071940 1 1 1 80 5 147812840 147813259 TCATTTGCATCAGGAGTTAAGG 59 147812781 147812800 CTCATCTACTTCCTGAGCCC 59 NA Rattus norvegicus 81 Vom2r19 ENSRNOG00000046198 ENSRNOT00000046796 2 1 1 80 1 65412357 65413665 TGCAAGAAGCTGTGTTCCT 60 65413705 65413727 GTCTCTTTGGTTCATACTCACTC 59 NA Rattus norvegicus 81 Syp ENSRNOG00000059720 ENSRNOT00000085907 1 1 1 91 X 15703324 15704024 CTATGATGGACTTTCTGGCT 57 15703252 15703270 CATCTTCACATCGGACAGG 58 NA Rattus norvegicus 81 Ndufaf3 ENSRNOG00000020068 ENSRNOT00000027262 2 1 1 80 8 117352655 117352673 CACTATCAACGGAAACCGC 59 117352460 117352611 TGATGAGATCCCACGTTCC 59 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 1 2 2 80 3 14505743 14505763 TAAGGACAAGAAGATGGATGC 58 14505805 14506019 ACCTCTTCGATCACAAAGC 58 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 1 2 3 80 20 5118415 5118570 TGGGATGTGGTCTTGACTG 59 5118609 5118632 CTACTCTGAATTCAGAAAGGACTC 59 NA InUTR Rattus norvegicus 81 Prss2 ENSRNOG00000045612 ENSRNOT00000029319 3 1 1 91 4 70625785 70626166 AGTCTTGGTGTGAACAACC 58 70625712 70625730 ATCTTTCCAGGGTAGGAGG 58 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677,ENSRNOT00000066637 3 2 2 80 10 87245430 87245533 AAGAGAAGAGTGCATCGCT 59 87245368 87245387 GTTCCATCAGCTCGTTTCTG 59 NA Rattus norvegicus 81 Mir206 ENSRNOG00000035498 ENSRNOT00000053621 1 1 1 60 9 26791772 26791793 GGCCACATGCTTCTTTATATCC 60 26791810 26791832 CACACTTCCTTACATTCCATAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 2 2 2 81 14 1465792 1465810 ATGACGGAACAGGATTTCC 58 1466073 1466263 CTGCGATAACCACCTTCTG 58 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 3 2 2 82 14 1463933 1464560 CTTCGAGAATGAAGGTGCC 59 1464605 1464624 AATAACAGCACAGGAAGTGG 58 NA Rattus norvegicus 81 Bccip ENSRNOG00000018066 ENSRNOT00000024355 3 1 1 80 1 205777590 205777608 AGGATGAGGAAGAAGACGA 57 205777651 205782880 TATTCACTTCCTCATCCACG 57 NA Rattus norvegicus 81 Cyp4f1 ENSRNOG00000004786 ENSRNOT00000006533 2 1 1 80 7 15183324 15183346 GATGAGTTTCTCAAGTCTAAGGC 59 15182405 15183286 TCCATCTTCATCCTTGGTCAG 60 NA Rattus norvegicus 81 Fbrs ENSRNOG00000042728 ENSRNOT00000055003 3 1 1 100 1 198934491 198934845 ACCTTTGAGGAAACCAGGA 59 198935265 198935283 CAAGCTTGTGGGAATCACC 59 NA Rattus norvegicus 81 Prtg ENSRNOG00000055251 ENSRNOT00000091722 3 1 1 80 8 79532922 79532941 ATCAGACAGTTGTGCTAGAG 57 79532984 79533259 TGGACTTGTGATCAAGACG 58 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000017254 3 1 2 115 2 207272115 207272134 CTTTCTGAGTCTTGCCTCTC 58 207272212 207275333 GTGGCCATGACTGAAATCC 59 NA InUTR Rattus norvegicus 81 Krtap2-4l ENSRNOG00000056967 ENSRNOT00000071705 1 1 1 136 10 87521535 87521553 GATCCTTCTCCTCCCAGAG 58 87521417 87521435 GATGGGCCTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 3 3 3 82 8 77272811 77276552 AGACGCAGCAAAGAATGAC 59 77272747 77272767 TTTCACGAAGACTTTCTCCTG 58 NA Rattus norvegicus 81 Ddx47 ENSRNOG00000007838 ENSRNOT00000011096 3 1 1 80 4 168780654 168781731 CATTCCCTCTAAATTCAAGGACAC 60 168781764 168781788 CTACAGAATATCATGAAGGAGTTGC 60 NA Rattus norvegicus 81 LOC685067 ENSRNOG00000029191 ENSRNOT00000037181 3 1 1 80 2 248222825 248223000 GGAAGTTGAGCTATGTCACAG 59 248223036 248223060 CAGAGTCATCTATTTCTTCAGATCG 59 NA Rattus norvegicus 81 Ppapdc3 ENSRNOG00000010068 ENSRNOT00000013507 1 1 1 63 3 11115220 11115238 AGAGGTGCTCATGAACCTG 59 11129175 11129193 CTGTACTCCAGCCACTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Ddx20 ENSRNOG00000015274 ENSRNOT00000068152 3 1 1 80 2 208145577 208146157 CTTCTCCCTTTACCAGATCCT 59 208145517 208145536 CATCGCAGCTTTAACTTCCA 59 NA Rattus norvegicus 81 Vipr2 ENSRNOG00000004317 ENSRNOT00000005876 1 1 1 80 6 144003663 144003683 TTATGTGTTGGTTCCTTCCAG 58 144003789 144004940 TTTCAGTTCACACTGTACCTC 58 NA Rattus norvegicus 81 Sdhaf4 ENSRNOG00000028087 ENSRNOT00000035033 3 1 1 80 9 30249358 30249376 AATCAAAGCTGCCAGTTGG 59 30243708 30249316 CATCTGGAAACTTCTGCAGTG 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507,ENSRNOT00000034991 2 3 3 80 6 10364248 10372395 ACTGTGATGACAGAATCTTGG 58 10372435 10372455 CGTGGTAGAATTCATAGGCAG 59 NA Rattus norvegicus 81 Sox2 ENSRNOG00000012199 ENSRNOT00000016236 1 1 1 249 2 121166622 121166640 TCCCATCCAAATTAACGCA 57 121166938 121166957 CAATGGACATTTGATTGCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 1 2 2 80 13 86450801 86450820 TTACAGAGCCAAACTCTCAC 58 86444914 86450759 GTGAATTCATTGCATGCCTG 59 NA Rattus norvegicus 81 Slc9a6 ENSRNOG00000000879 ENSRNOT00000066809 1 1 1 80 X 159012459 159014768 TGGTGACAGCTTTAGTGAC 57 159014810 159014830 AGGACATCAAGAAGAACAGAC 58 NA Rattus norvegicus 81 Donson ENSRNOG00000002012 ENSRNOT00000061304 2 1 1 80 11 31841149 31841168 GTTTGTCTTGGCTGGAAGAG 59 31840749 31841108 TTTCTTTACGCAGCTTGACAG 60 NA Rattus norvegicus 81 RGD1560617 ENSRNOG00000004457 ENSRNOT00000038168 1 1 1 60 7 127965746 127965769 GTGAGCATATAATCCCAAGATCAG 59 127965785 127965806 CCATCGTCCTCAATATCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx19 ENSRNOG00000002979 ENSRNOT00000063870 1 1 1 80 13 83417434 83417452 GGATGAAAGCTCCCATCTC 58 83416042 83417392 GAGAATTCAGCATTATCTGCC 57 NA Rattus norvegicus 81 Zfp91 ENSRNOG00000012524 ENSRNOT00000016804 1 1 1 80 1 229615023 229615595 GTGGCATTAGTAGTGATGAGG 58 229614963 229614982 TTGGGTCATCTTTGAATGGT 57 NA Rattus norvegicus 81 Arhgap18 ENSRNOG00000011245 ENSRNOT00000015547 2 1 1 80 1 19269192 19270867 ATGAGAGTCAAGAATCTTTGCC 59 19269133 19269151 GTGCTGCTTGACACTTTCC 60 NA Rattus norvegicus 81 RGD1306954 ENSRNOG00000021399 ENSRNOT00000030279 2 1 1 80 11 31099424 31103252 CTCTGCACAGAGATAGAGGAG 59 31099364 31099383 AATCTGCTCGTCAGTCAGTC 60 NA Rattus norvegicus 81 Olfml2b ENSRNOG00000003018 ENSRNOT00000004117 3 1 1 80 13 89030892 89031417 GAGAACTTCAAACAAGGTCG 57 89031460 89031478 ATTGTACACCACATGTCCC 57 NA Rattus norvegicus 81 Mir135a ENSRNOG00000035529 ENSRNOT00000053652 2 1 1 62 7 32894948 32894968 TCACTCTAGTGCTTTATGGCT 59 32894906 32894930 CATCCCTACATGAGACTTTATTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000085389,ENSRNOT00000014230,ENSRNOT00000083233 2 6 10 88 10 87122195 87126965 CCCAGACGATTATGATGACG 58 87122126 87122145 TGAGGATCTCACTGATGAGG 58 NA Rattus norvegicus 81 Flywch1 ENSRNOG00000004333 ENSRNOT00000005879 1 1 1 82 10 13097336 13098374 CAGGAGTGGTACGGTATCG 59 13097272 13097290 GTAGAGGAAGGACTGGTGC 60 NA Rattus norvegicus 81 LOC100910214 ENSRNOG00000024462 ENSRNOT00000034036 2 1 1 80 12 41184886 41184904 AACACTTCCTGAAGCATCC 58 41181806 41184845 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 AABR07051565.1 ENSRNOG00000053188 ENSRNOT00000058260 2 1 1 77 3 17180426 17180446 GCTTTAGAGATGGAGACAGAC 58 17180725 17180743 CACAATGTCACCAGTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Smim17 ENSRNOG00000042502 ENSRNOT00000064949 2 1 1 80 1 71116747 71119645 ATTCTCAGGGCTTTGTGGA 59 71116685 71116704 AGAATAAGAACAGCACGCAC 59 NA Rattus norvegicus 81 Gtdc1 ENSRNOG00000031038 ENSRNOT00000059679 1 1 1 80 3 29590080 29590100 CTGGAAAGCATTATCAGACCC 59 29471265 29590038 CTTGGGCATGAATCTGCTC 59 NA Rattus norvegicus 81 Sdcbp2 ENSRNOG00000009528 ENSRNOT00000012690 1 1 1 80 3 147091621 147092410 CCACTCTCAGAGCTGTATCC 59 147092450 147092471 CTTCTGAACTTCTTGGCTAGAG 59 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 3 2 2 81 7 55149589 55149609 CTTGTAACAGTACCCAGAGTG 58 55149650 55151644 TCACCTGATAACACTGATCTG 57 NA Rattus norvegicus 81 Mtmr10 ENSRNOG00000016090 ENSRNOT00000021530 2 1 1 80 1 125145623 125145641 TTATTCCCAGCCAACAGAC 57 125145684 125151291 ACTTTGTTGGCTGAATTGTG 58 NA Rattus norvegicus 81 Lin54 ENSRNOG00000002203 ENSRNOT00000003006 1 1 1 80 14 10816646 10816665 CAGGCAACTCTAACTTCACC 59 10816707 10817357 ACTCTGATGGAATTATGCCG 58 NA Rattus norvegicus 81 Lin54 ENSRNOG00000002203 ENSRNOT00000003006 2 1 1 80 14 10794852 10811047 CCAAATAAGACAGTGAAGTCGG 59 10811085 10811106 GGGAATGATGGTCTTAAACTGC 60 NA Rattus norvegicus 81 Rpsa ENSRNOG00000018645 ENSRNOT00000025225 3 1 1 90 8 128806858 128806876 CAGGAACCCACTTAGGTGG 60 128806926 128807492 AGGTTGATGATGTAGATACCGTC 60 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 2 3 3 80 2 27006206 27006225 GTTGAGTCTGGTGTTTCACG 60 27006267 27009105 AGGGTTACTTCCTAGCACAG 59 NA Rattus norvegicus 81 LOC102550668 ENSRNOG00000033487 ENSRNOT00000048673 3 1 1 60 19 33130587 33130605 CATCAAGCACTCGAAGAGC 59 33130627 33130647 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnot7 ENSRNOG00000012263 ENSRNOT00000016882 1 1 1 80 16 54901114 54903292 AATTATGTTGCTATGGACACCG 59 54903330 54903351 CTGATAGTCAGCATTGCTTCTG 60 NA Rattus norvegicus 81 Zfp133 ENSRNOG00000027955 ENSRNOT00000031623 2 1 1 115 3 138597816 138609108 TGCTGGAAGGTACACATGG 60 138609184 138609205 TAGTTCTCCAACATCACCTCTC 59 NA Rattus norvegicus 81 Cep250 ENSRNOG00000019340 ENSRNOT00000055251 1 1 1 80 3 151538483 151538501 AGGAGATAGCCATGTTCCT 57 151538545 151540359 TGAGTACCAACTCCTCCTG 58 NA Rattus norvegicus 81 Prkg2 ENSRNOG00000002361 ENSRNOT00000003237 3 1 1 80 14 12279361 12297415 GGCTACCTTAAGTTGGTTGAC 59 12297457 12297475 TGGAGTCCCACAGAATGTC 59 NA Rattus norvegicus 81 Cnep1r1 ENSRNOG00000015534 ENSRNOT00000020816 2 1 1 80 19 19904119 19904140 TTAGCTGTATAACGCTGATAGG 58 19903453 19904081 ATCGAGCAGCTATAATTGATGG 59 NA Rattus norvegicus 81 Zfand2b ENSRNOG00000018639 ENSRNOT00000025219 1 1 1 97 9 82372755 82372773 ATTGCTTTGCAGAATGGCT 59 82372918 82373211 TCTTGAGAACTTGGGATCTGG 60 NA Rattus norvegicus 81 Slc41a2 ENSRNOG00000008713 ENSRNOT00000011572 1 1 1 80 7 26561064 26580678 CAGTTATCAACGGGATCGG 58 26580722 26580740 GGAGGCTGTGTAAATGGAG 58 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000085275,ENSRNOT00000042200 3 2 2 80 14 77132617 77132636 CCATTTCTCCCTGAGAGTCC 60 77132677 77143715 GAATGTTTGGAAGGCTTTCGT 60 NA Rattus norvegicus 81 Arhgap40 ENSRNOG00000015359 ENSRNOT00000040516 3 1 1 81 3 155018885 155018903 GTGCTTCTACAGAGGACCT 58 155018948 155021480 TGGGAATTCTGAACCTCGG 59 NA Rattus norvegicus 81 Cept1 ENSRNOG00000017723 ENSRNOT00000036551 3 1 1 82 2 209121640 209121661 TCCTGTACAAATTACTTCCGTG 59 209121194 209121598 GAAAGGACACTTGTTCCTGC 60 NA Rattus norvegicus 81 Cnnm3 ENSRNOG00000016032 ENSRNOT00000021592 2 1 1 80 9 43102864 43103233 CAGCTCATTAAGGTCACACG 59 43103275 43103294 CTCTGGAGATGGAGGTAAGC 59 NA Rattus norvegicus 81 Klhdc9 ENSRNOG00000004022 ENSRNOT00000005352 1 1 1 90 13 89743549 89744401 ATGATACCCGCAAGTCTCC 59 89743477 89743495 TTCCAAAGGCAAGTACGGT 60 NA Rattus norvegicus 81 Xirp2 ENSRNOG00000034258 ENSRNOT00000048300 2 1 1 84 3 53642580 53642599 ATATGAAACCTCGGATGCAC 58 53642646 53644895 TGGACCAACAGTTTCACTC 58 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000077871 2 1 3 84 12 47243901 47247340 GCATCTCAGACCAAGACCA 59 47247388 47247406 GTGAACTGATAGCGGACGA 60 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 1 2 2 80 8 29944666 29945211 TCAAGGAAGATACCAGGTTAGC 60 29945249 29945270 AGAAAGTCAAAGTGGATATGCG 59 NA Rattus norvegicus 81 Rbbp9 ENSRNOG00000007972 ENSRNOT00000010678 3 1 1 81 3 138705857 138705875 TGGAGACAGAACTGCACTG 60 138703577 138705812 TCTGCATACCTCATGGCTG 60 NA Rattus norvegicus 81 Barhl2 ENSRNOG00000002117 ENSRNOT00000002887 2 1 1 86 14 4363392 4364990 AAATGCCACGGAACAAAGG 59 4365039 4365058 CTTTCGAGGTTTCTTGGCTC 59 NA Rattus norvegicus 81 Ptov1 ENSRNOG00000020358 ENSRNOT00000027580 1 1 1 104 1 100861156 100861174 AGTCATGGAGTGGCAAGAG 59 100860906 100861013 TGATCCGTTCTCAGGATCTC 59 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000056551 3 1 2 89 10 58866750 58868883 CCCACATGAAACAGTGTTCG 60 58868933 58868953 TCATAAGTGGAAGGGTTGAGG 60 NA Rattus norvegicus 81 Gpn2 ENSRNOG00000007083 ENSRNOT00000009275 3 1 1 106 5 151810349 151812111 TGAACATCCAGGACAAGGAC 60 151812180 151812198 CATCAGGGCTTCCAGACTC 60 NA Rattus norvegicus 81 Parg ENSRNOG00000019978 ENSRNOT00000027071 1 1 1 80 16 8362680 8362804 CTGTGGAAGATGAGAATGGT 57 8362847 8362865 GCGTGAATTTGTTGAGGAG 57 NA Rattus norvegicus 81 Parg ENSRNOG00000019978 ENSRNOT00000027071 2 1 1 80 16 8362679 8362803 CCTGTGGAAGATGAGAATGG 58 8362845 8362864 CGTGAATTTGTTGAGGAGTG 57 NA Rattus norvegicus 81 Gipc1 ENSRNOG00000003864 ENSRNOT00000005374 2 1 1 80 19 24794677 24794698 CTTCACTAATGTCAAGGAGCTG 59 24794738 24795448 AGGGTACAGAACATCACCTC 59 NA Rattus norvegicus 81 Hat1 ENSRNOG00000001524 ENSRNOT00000002085 2 1 1 80 3 58042744 58042762 GCCTGTCAACTATGTTCCG 59 58042806 58050923 CTTCAACGTCATCTGCCTC 59 NA Rattus norvegicus 81 Serpinb3 ENSRNOG00000031134 ENSRNOT00000040021 2 1 1 83 13 27188211 27188231 GTGGAAATACCATACAAAGGC 57 27187523 27188168 TTCTTCAAGCTTCTTCAGACC 58 NA Rattus norvegicus 81 Tlk2 ENSRNOG00000006285 ENSRNOT00000066484 3 1 1 80 10 93478052 93478075 CTAGAAAGGGTTAGGAATCTACAC 58 93478113 93479955 TGGGTGGTCTTTAAACTGTG 58 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124,ENSRNOT00000016740 1 2 2 80 1 244661989 244662007 TGCTAACACCGAAAGGGAG 60 244662051 244664229 TCATCTTCAGCCATCAGCC 60 NA Rattus norvegicus 81 AABR07006542.1 ENSRNOG00000021811 ENSRNOT00000029774 3 1 1 60 1 239319432 239319452 AGCACAATAGCAAGAAAGCTG 60 239319392 239319413 CATTATTCATGACACGTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcna10 ENSRNOG00000050416 ENSRNOT00000074358 3 1 1 60 2 209931250 209931268 CATCATCAACATTGCTGGG 57 209931289 209931310 TGGGAATTGATTGAGAGTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000091710,ENSRNOT00000006849 1 2 2 60 13 90386641 90386660 GAAAGTGTCTGGCTTCAAGG 59 90386159 90386177 CGTGGAGTTATTGGTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1564018 ENSRNOG00000022308 ENSRNOT00000011092 3 1 1 60 1 236530386 236530405 TTTCCTTCACAGATTGGGAG 58 236530345 236530364 CTGGGAATCTGGTGAAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361411 ENSRNOG00000030234 ENSRNOT00000042460 3 1 1 81 7 23012790 23012809 CAAATCTTCACGGTTTCACC 58 23012851 23017392 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 2 2 2 83 2 29614433 29614454 TGATCTTGCATCCTTAATGGAC 59 29614498 29616642 ATGTTGTCCACAAACCGAG 58 NA Rattus norvegicus 81 Crabp1 ENSRNOG00000023633 ENSRNOT00000031175 3 1 1 80 8 59344893 59344912 CACGGAGATCAACTTCAAGG 59 59344955 59347501 CAAGTGGGTAAACTCCTGC 59 NA Rattus norvegicus 81 Zfp207 ENSRNOG00000000236 ENSRNOT00000000253 1 1 1 80 10 67773528 67773546 CTGCTACACTGACAACCAC 59 67773590 67774183 GTGCCCTTCTTTCTTCCAG 59 NA Rattus norvegicus 81 Ka11 ENSRNOG00000061636 ENSRNOT00000084619 3 1 1 80 10 88143693 88143715 GTTATGGTAGTCATAAGTGCACC 59 88143451 88143653 GTGTGGCTGTCATGATCTG 59 NA Rattus norvegicus 81 Ubl5 ENSRNOG00000020442 ENSRNOT00000027749 1 1 1 80 8 21663914 21663932 CCCGCTGGAATAAGATCGT 60 21664115 21664884 CGTGGATCTCATAGTCTCCC 59 NA Rattus norvegicus 81 Ptpn20 ENSRNOG00000020203 ENSRNOT00000027352 2 1 1 80 16 9928251 9943201 TTTCTGAAAGTAGCACTGACAC 59 9943241 9943260 TGTTGAATATTAGCGGTCGG 58 NA Rattus norvegicus 81 Zfp494 ENSRNOG00000042772 ENSRNOT00000065954 2 1 1 87 7 18180370 18180388 GAAGTGGAAATCCTGTGGC 59 18175939 18180319 AACATGGACCATAGCAGGA 58 NA Rattus norvegicus 81 F2rl2 ENSRNOG00000018054 ENSRNOT00000024292 2 1 1 85 2 26240449 26240471 GGAGATGAAAGTCCTTATCTTGG 59 26240514 26244178 CTGAAACATGTTTCATGCCAC 59 NA Rattus norvegicus 81 LOC684444 ENSRNOG00000045818 ENSRNOT00000071167 1 1 1 60 2 29247868 29247888 CAGTGTATATGTTGATGCCGA 58 29247828 29247847 GCTTTACTTCCGAAAGTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Isg20 ENSRNOG00000054561 ENSRNOT00000091588 2 1 1 85 1 140602741 140602760 ACTACAGAACCCAAGTCAGC 60 140602808 140604712 CTGCAGGATCTCTAGCCTG 59 NA Rattus norvegicus 81 Slc9a2 ENSRNOG00000015567 ENSRNOT00000021270 2 1 1 81 9 47387049 47417900 GCCAAGATTGGTTTCCATCTC 60 47417940 47417961 GTAGAAGCCCAACCATTATGAG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728,ENSRNOT00000090426 3 2 2 96 3 57898148 57901104 CTGTACCGAGGTCTGATCC 59 57897831 57897851 TTCTGGTAAATTTGTCCCGGA 60 NA Rattus norvegicus 81 Spz1 ENSRNOG00000013050 ENSRNOT00000017408 2 1 1 60 2 22145945 22145963 AAGCCTTTGCAAACGTCTG 60 22145903 22145923 CACATTTCTTGTCCTGCTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk5l ENSRNOG00000045980 ENSRNOT00000074179 3 1 1 118 1 100048039 100055984 AATGAGCACTTCTCCCTCG 60 100056066 100056084 TGTTGTAGAGTGGGTGTGG 59 NA Rattus norvegicus 81 Metap1 ENSRNOG00000012947 ENSRNOT00000017579 3 1 1 81 2 243754655 243758736 TGTTAATGTGGACATCACTCTC 58 243754595 243754614 TTCATCCACATCTCCAACGA 59 NA Rattus norvegicus 81 Rab33b ENSRNOG00000013035 ENSRNOT00000017396 3 1 1 80 2 140542264 140549531 CGCATTAAGATCCAGTTGTG 57 140549574 140549592 CACGTTCCTGTAGTAGTGC 58 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 1 2 2 80 1 68471482 68471504 CTGACCTCATCTATAATCTCCTG 58 68471541 68477656 GCAATTTATGTACTCTGGTCAC 58 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777,ENSRNOT00000003145 1 2 2 80 X 157854409 157856982 ATCCATGTGCTCAGTGACC 60 157857026 157857044 GCTCATAACTGTCGCACTG 59 NA Rattus norvegicus 81 Tbc1d17 ENSRNOG00000020191 ENSRNOT00000027436 3 1 1 80 1 100843015 100844607 TTCTCTAAGAAGGACCCAAGTG 60 100842956 100842974 GTCAGGTTCATAGCCTGGG 60 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 2 2 2 80 13 84617727 84617746 ATCCAGGAATTGGAGGATGG 59 84612933 84617684 AAATAGGGCTGGTACCCAC 59 NA Rattus norvegicus 81 Cfap97 ENSRNOG00000032192 ENSRNOT00000045721 1 1 1 80 16 49309738 49309759 TGCAAATCTAGACCGTAGATCC 60 49298214 49309698 TGCAGGAAAGCTTTCAACAG 59 NA Rattus norvegicus 81 Bcl2a1 ENSRNOG00000047606 ENSRNOT00000039850 1 1 1 106 8 96551772 96551793 TGGATGTGGATACTTACAAGCA 60 96551860 96559283 TGTGAAGCCATCTTCCCAG 60 NA Rattus norvegicus 81 Aadacl2 ENSRNOG00000050858 ENSRNOT00000073078 1 1 1 80 2 150116525 150116544 GTAGATCCTACCCGAATTGC 58 150116587 150126314 AATCTGCACCTGTTGTGTC 58 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 1 2 2 80 8 50080507 50080603 AGAACCAAATTAGAGCCGAG 58 50080446 50080464 CCCTTTCAGCTTTCTGGAG 58 NA Rattus norvegicus 81 Zfp366 ENSRNOG00000017249 ENSRNOT00000023180 1 1 1 84 2 29480237 29480255 CCTACATCTGCTCCGAGTG 60 29480303 29484262 TCTTTCACACCCTTGTGGG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000076489 2 1 6 82 10 89212114 89212133 GCATCCACTTTAGGTACCGA 60 89211528 89212071 CGGCAACTCCTTAGATTTGTC 59 NA Rattus norvegicus 81 Cylc2 ENSRNOG00000022406 ENSRNOT00000032726 3 1 1 83 5 66320287 66320305 ATTTCCCAAACCACCAAGG 58 66314953 66320242 TCATCAATTACAGGAGCTGGA 59 NA Rattus norvegicus 81 Map10 ENSRNOG00000028652 ENSRNOT00000031717 2 1 1 60 19 58507003 58507021 TACAGAGGCGAACACAAGG 60 58507044 58507063 TTGATTCTGAGCGAGATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cgnl1 ENSRNOG00000054080 ENSRNOT00000083220 2 1 1 80 8 78130667 78130685 CTGGAGGAGCAGATAGGAG 58 78129573 78130625 CAGTGTCTTAAGCCTTAAGCC 59 NA Rattus norvegicus 81 Tmod3 ENSRNOG00000032436 ENSRNOT00000013852 1 1 1 80 8 82445344 82446546 CCTTGCAGCAATTCTTGGG 60 82445282 82445301 TCGTCACCGTTACTACTTCC 59 NA Rattus norvegicus 81 Hsd17b13 ENSRNOG00000002212 ENSRNOT00000038188 2 1 1 80 14 7124674 7126196 AACCCAAGTACCAGGTTATGG 60 7126235 7126256 CTTGTTGGTAAGTATCCCATCG 59 NA Rattus norvegicus 81 AABR07043115.1 ENSRNOG00000047294 ENSRNOT00000074210 1 1 1 80 19 21969751 21970050 CGGGACCACAGAAATAGCA 60 21969689 21969708 CTGTTGCTTGGTTTCCTGAG 60 NA Rattus norvegicus 81 Krt35 ENSRNOG00000013754 ENSRNOT00000018566 2 1 1 80 10 88007659 88007678 ATGAGGTGCCAGTATGAGAC 59 88007430 88007616 CAGTTCCTCAGTCTGGGTG 60 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025279 1 1 2 264 8 128842058 128842076 GAGGACTGGATCTGCTGTG 60 128842513 128842532 GCTGTTTAGACTTCTGAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 2 2 2 80 2 116364365 116369572 AAGTGAAGCAGTTACCACC 58 116364303 116364323 AGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 LOC680639 ENSRNOG00000049248 ENSRNOT00000048123 2 1 1 60 2 34419125 34419144 CATCAAGCACTCAAAGAGCA 59 34419084 34419104 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nck2 ENSRNOG00000017155 ENSRNOT00000023029 3 1 1 104 9 50313757 50313775 TCACCTTCAAGGTGTCCTC 59 50313843 50335809 TCATGGAGCCCTTCTTTGG 60 NA InUTR Rattus norvegicus 81 Erbb3 ENSRNOG00000004964 ENSRNOT00000006796 2 1 1 80 7 3000296 3000314 ATAAGATACCCGCACTGGA 58 2999833 3000254 ACTGGATGTTTAGGTAACCTG 57 NA Rattus norvegicus 81 LOC100363068 ENSRNOG00000047293 ENSRNOT00000049165 3 1 1 80 14 6193310 6193329 ATCCTTCCCAGAAGAGTCTC 58 6192924 6193269 CTTCCCAGTAATAGCCTACAG 57 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 1 2 2 81 3 147109080 147109100 AGCAGAAGGAGGTTTGTATCC 60 147106444 147109037 ATCTCTGTGTCCCGATCCT 60 NA Rattus norvegicus 81 Rbpj ENSRNOG00000046327 ENSRNOT00000071929 1 1 1 80 14 59670037 59670056 CAACCCTGTGCATTTATTGG 58 59666976 59669994 TGTGCAGTAGTTCTTCCCT 58 NA Rattus norvegicus 81 Banf2 ENSRNOG00000006032 ENSRNOT00000007946 3 1 1 80 3 138174172 138183561 TCAACAAGGCCTATGTCCTG 60 138183604 138183622 AGCAGATGATCCACCTCTG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 2 2 2 80 7 2558242 2558477 AAGGAACGGAGATATGGGTG 59 2558181 2558200 TAAGGAGCTGTGTAGAACCC 59 NA Rattus norvegicus 81 Dnaja4 ENSRNOG00000012106 ENSRNOT00000017053 3 1 1 80 8 59278740 59278758 AATCAGAACTGGAGCTCCG 60 59278801 59279141 CTTCACCATCTTGTCTCCGT 60 NA Rattus norvegicus 81 Trim43a ENSRNOG00000010699 ENSRNOT00000044521 2 1 1 81 8 96397457 96397477 CAGGAGCTTATGACAATGTCC 59 96398608 96399302 CTAACTCACATCTTCTAAACAGGTC 59 NA Rattus norvegicus 81 Pdcl3 ENSRNOG00000013286 ENSRNOT00000017882 2 1 1 80 9 45675663 45675681 CTAAGGAGAGCCTGAAGGA 58 45675725 45677914 ATGTCTTCACCACTGACTG 57 NA Rattus norvegicus 81 Shox2 ENSRNOG00000012478 ENSRNOT00000016843 1 1 1 80 2 164121008 164121029 TTTGAAGCTTGTAGAGTTGCAC 60 164119305 164120969 CACGTTGCAATGACTATCCTG 60 NA Rattus norvegicus 81 Limd2 ENSRNOG00000025448 ENSRNOT00000035973 2 1 1 80 10 94351820 94351923 GCGGTCTAAGTCCTTTAGCT 60 94351759 94351777 CGCTCCATAGGGTACACAG 60 NA Rattus norvegicus 81 Tatdn1 ENSRNOG00000047198 ENSRNOT00000070909 2 1 1 84 7 98792757 98792778 AGAAGAAATAGAGATCGGTGTG 58 98790589 98790611 AAAGGTCCAAGTCCAAAGC 58 NA Rattus norvegicus 81 AABR07010583.1 ENSRNOG00000055814 ENSRNOT00000072748 2 1 1 62 2 141422811 141422832 AGAGTCTAATCAGGAGGTTGC 59 141422855 141422874 CACCTGTTCTGTAGAGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Nhlrc2 ENSRNOG00000016948 ENSRNOT00000022788 1 1 1 80 1 277404825 277405757 AGTTTCTGTGCTCCCTGTC 60 277405800 277405819 GGCACTGTCTTCTGTTTCTC 59 NA Rattus norvegicus 81 RGD1308775 ENSRNOG00000004112 ENSRNOT00000005514 3 1 1 81 14 84145951 84145969 TACCCAAGAGCCATTTGTC 57 84144109 84145907 GAGGCTTTCATCTCCATCTC 58 NA Rattus norvegicus 81 Rap1gap ENSRNOG00000013825 ENSRNOT00000046802 1 1 1 80 5 156065423 156066909 TCTTCGAGTCTTTCAAGAGGG 60 156066950 156066969 TGTTGGGTTTCTTGTTGCTC 59 NA Rattus norvegicus 81 Spryd3 ENSRNOG00000010793 ENSRNOT00000055320 2 1 1 80 7 143733152 143733171 ACTACAGCTTGGATCACCAG 60 143732837 143733109 GGCCATTGTATAGCTTGCC 59 NA Rattus norvegicus 81 Olr1107 ENSRNOG00000010787 ENSRNOT00000014316 2 1 1 60 7 140032650 140032671 CATTCACCACTACACTTGTGAG 59 140032690 140032710 GGAGATATCCGAACAGGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038,ENSRNOT00000082267 1 3 3 80 3 176480320 176480338 ACGACTATGAGCCTAGCTG 59 176480381 176480820 AAGTAGCCACCTTATCCCTG 59 NA Rattus norvegicus 81 Cish ENSRNOG00000029543 ENSRNOT00000040056 1 1 1 82 8 116057697 116057715 TGAACCGAAGGTGCTAGAC 59 116057761 116058001 AGTACCAACCAGATTCCCG 59 NA Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000047104 1 1 2 92 10 87753385 87753403 CTAGCTGTGGAGTGTCCAG 60 87753311 87753329 TAGTCTGACAGCACACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000047104 3 1 2 95 10 87753385 87753403 CTAGCTGTGGAGTGTCCAG 60 87753308 87753326 AGGTAGTCTGACAGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910227 ENSRNOG00000047523 ENSRNOT00000074802 2 1 1 60 2 115290570 115290591 TGTTTCTTGTACACAGTGATGG 59 115290610 115290630 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564340 ENSRNOG00000013243 ENSRNOT00000066617 3 1 1 82 3 176721957 176723274 GAAGAGGAGTGCTCCTAGAC 59 176723318 176723337 AAGGAATGTGGACTGTCCAG 60 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392,ENSRNOT00000079797 1 2 2 81 8 52127710 52127730 AATAAGAGTGATGACTCCGTG 58 52127773 52129347 CCTTCAAAGGCCTGAAGTC 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 2 1 1 69 3 168130007 168130906 GAAACACCTCCAGAATTTAGAGG 59 168130935 168130953 AATCATCAAGCAGTCGTCG 58 NA DesignNoJunction Rattus norvegicus 81 Pms1 ENSRNOG00000004076 ENSRNOT00000043714 1 1 1 80 9 53134221 53134240 CCTTCAAACTCTCACAACCT 58 53134283 53142149 GTTGTCACTACCACCTCTG 58 NA Rattus norvegicus 81 Eif2d ENSRNOG00000004910 ENSRNOT00000006768 3 1 1 80 13 47937912 47937932 TCCCATCCTGATCTTCTACCA 60 47937974 47938485 CAGCATCAAATCTGCTCCC 59 NA Rattus norvegicus 81 Ung ENSRNOG00000000692 ENSRNOT00000056865 1 1 1 80 12 48253293 48253311 ACACCACAAGGTCTATCCG 59 48249669 48253250 ATGACAACCTTCACATCACG 59 NA Rattus norvegicus 81 Pex5l ENSRNOG00000011211 ENSRNOT00000015200 3 1 1 80 2 119337702 119337720 CGGAGGAACTGGATATCGG 60 119336418 119337662 GTGAAAGTAATAACCCTTCTCGC 60 NA Rattus norvegicus 81 Hsd17b1 ENSRNOG00000019830 ENSRNOT00000026878 2 1 1 81 10 88987867 88987885 TTGGATGTCAGAGACTCGG 59 88987927 88988084 CATTACAGACCAGTACATCCAC 59 NA Rattus norvegicus 81 Tpst2 ENSRNOG00000000664 ENSRNOT00000000831 1 1 1 81 12 50348847 50348865 GATCCGTACGCAAATCCAC 59 50346627 50348802 AGTCTCCTTTCAAGACCCG 59 NA Rattus norvegicus 81 Cabp4 ENSRNOG00000022044 ENSRNOT00000001550 1 1 1 80 1 219387190 219387611 CATGTTTGGAAAGGACCGT 58 219387048 219387066 TGGTCAGTGTCAAACTCCT 59 NA Rattus norvegicus 81 Coro1c ENSRNOG00000000697 ENSRNOT00000000886 3 1 1 80 12 48531321 48531339 CTGGACATAGACTGGTGCC 60 48531382 48543848 GATCTGCCAAACCATCACAG 59 NA Rattus norvegicus 81 Rsl24d1 ENSRNOG00000052787 ENSRNOT00000091698 3 1 1 82 8 79794260 79794278 GAAGAAGAGGAACCCACGA 59 79794324 79795805 ATGAGTTGTCCACCGTGAG 60 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000059061 ENSRNOT00000083839 1 1 1 114 14 84937641 84937659 CTTCTACCTTCGCCCTCAC 60 84935715 84937564 TGCTTTGTTGTCAGTTTCCC 59 NA Rattus norvegicus 81 Ube2m ENSRNOG00000027514 ENSRNOT00000031007 1 1 1 80 1 65539346 65539365 GTGTGACATCAGCTTCTCAG 59 65539405 65539520 CTCTTGTAGAAGCCTTCATCAG 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 3 3 3 80 5 61585495 61585513 TCTGGAAGCGTATCTGAGG 59 61585556 61586708 ACAGCATAGCAGACAATCTC 58 NA Rattus norvegicus 81 Peak1 ENSRNOG00000042519 ENSRNOT00000068658 1 1 1 82 8 60870309 60888140 CAGTCAAGATCTGCAAGAGC 59 60870246 60870264 ATGTACAGGCAGACTCTGC 60 NA Rattus norvegicus 81 Peak1 ENSRNOG00000042519 ENSRNOT00000068658 2 1 1 83 8 60870310 60888141 GCAGTCAAGATCTGCAAGAG 59 60870246 60870264 ATGTACAGGCAGACTCTGC 60 NA Rattus norvegicus 81 Epn1 ENSRNOG00000015753 ENSRNOT00000021286 3 1 1 83 1 72308465 72308485 CCTTCTCCGAGATTATGAGCA 60 72302813 72308420 ACGTCATGGCCTTGTAGAC 60 NA Rattus norvegicus 81 LOC680489 ENSRNOG00000026351 ENSRNOT00000035538 3 1 1 60 X 45000224 45000242 AAACAATGTTCACCAAGCC 57 45000182 45000201 TGGTAAATGCAGACTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyzl4 ENSRNOG00000019350 ENSRNOT00000026173 2 1 1 84 8 130224109 130224127 TTCGGCCTCTTTCAGATCC 60 130222919 130224062 GATTCAGTAAAGCCGTGCAG 60 NA Rattus norvegicus 81 Tcf7 ENSRNOG00000005872 ENSRNOT00000008022 2 1 1 81 10 37625297 37625318 CTCCACTCTACGAACATTTCAG 59 37624225 37625255 GGTCTGTGAACTCCTTGCT 60 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 2 3 3 92 8 120444316 120444335 AGAAAGTCTGGATGAGGAGG 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073,ENSRNOT00000004699 1 2 2 80 10 96264811 96264831 GGTGAATACTACAATGTGCCC 59 96237160 96264771 CTTGGCTTTCTCGAACTTCTG 60 NA Rattus norvegicus 81 Stx17 ENSRNOG00000005801 ENSRNOT00000007641 2 1 1 80 5 63912838 63921019 CCCTCCTAGTAAATTCTCAGCA 59 63921058 63921078 CCTCTTCAACATTCACAGCAG 60 NA Rattus norvegicus 81 Mrps9 ENSRNOG00000016201 ENSRNOT00000021899 2 1 1 80 9 49659066 49659084 CTAGGGAAGAGGCACTTGG 60 49659126 49674521 GGCAATAGCTCTGTCAATGTC 60 NA Rattus norvegicus 81 Mrps9 ENSRNOG00000016201 ENSRNOT00000021899 3 1 1 80 9 49674671 49687597 CAAAGCAAAGAGCAATCCAG 58 49687640 49687658 AGTAGTACGACTGTTTGCC 57 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551,ENSRNOT00000001552,ENSRNOT00000039281 2 3 3 88 12 47206522 47206540 GATGGGCCCTAAACTCCTG 60 47206592 47206816 CACCGTTGGTGTCAAACTC 59 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 3 2 2 80 10 90403055 90403076 AGAAGAAGGAGAATGAGTCCAG 59 90402848 90403015 TCGTGATTCCTATCCGAGTG 59 NA Rattus norvegicus 81 Slc9a4 ENSRNOG00000015306 ENSRNOT00000065234 2 1 1 80 9 47323184 47327269 TTCGGCAAAGAACTCTGTC 58 47327313 47327331 GGATCAGGATCTCTTTGGC 58 NA Rattus norvegicus 81 Olr83 ENSRNOG00000050132 ENSRNOT00000046793 1 1 1 60 1 168327657 168327675 CATGTGGCTGTTCTCTGTG 59 168327698 168327717 ACCGATGAGTGAGGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj16 ENSRNOG00000004713 ENSRNOT00000006238 2 1 1 60 10 99388424 99388442 TGGTTGATATTCGGCTCCA 59 99388466 99388484 CGCTTAATAGGTCTCCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr129 ENSRNOG00000025163 ENSRNOT00000034624 2 1 1 60 1 169031298 169031320 CTCTTTCCTCCATTTATGAACCC 59 169031260 169031278 TCCTCTGAATCTGCTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 3 2 2 80 1 127751988 127752007 CAGGGCCTTCACATTTACTG 59 127752049 127779284 CACATCCTGGATGTTCTGTG 59 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663,ENSRNOT00000082138 2 2 2 80 5 157921409 157922260 GACAGAGAAGAAGTTGAAGGAG 59 157922299 157922319 GGATGATTGGTGAGAATGTGG 59 NA Rattus norvegicus 81 Tex15 ENSRNOG00000007748 ENSRNOT00000034325 2 1 1 80 16 62317348 62318995 ATCCAAACATCCAAGCACTG 59 62317287 62317306 CCTGTCAAAGTGTCAGAGGA 59 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 3 1 2 69 10 62053947 62106111 ATTTCTGGAGGACACAGGG 59 62106144 62106162 ACTCAGAGGTAGCTCTCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 2 1 3 160 20 4789802 4789947 TCTCACCTTGAGATGGGAG 58 4696035 4789679 CTGTTCCTCCTGTGTTTCTC 58 NA Rattus norvegicus 81 Got1l1 ENSRNOG00000038473 ENSRNOT00000035985 1 1 1 80 16 69026047 69026068 CTTGTGATTGGGAACATCTCTG 59 69026106 69026223 CTGCTTGCTCTTAATGATGGAC 60 NA Rattus norvegicus 81 AABR07066201.1 ENSRNOG00000022509 ENSRNOT00000061893 1 1 1 121 9 4733492 4733510 GAAGCTGATGAAGAAGCGA 58 4734029 4734047 ATCACTCCTCAATAGGGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mnt ENSRNOG00000002894 ENSRNOT00000003933 2 1 1 103 10 61692130 61692148 TTTGAGACTCTGAAGCGCA 60 61692215 61696955 TTCCTCTTCAGGGACTGGA 60 NA Rattus norvegicus 81 Topaz1 ENSRNOG00000025601 ENSRNOT00000036545 3 1 1 80 8 131831597 131832437 TGAAACAGTTAGCAAAGATCCG 59 131832476 131832496 AAGTACACAGCACTTATTCCG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000061213 ENSRNOT00000084294 3 1 1 81 2 30744561 30744579 TAGTGAAGCCACATGCTCC 60 30742317 30744519 GATCTCAAAGTGTCTGAAGCAC 60 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680 1 1 2 93 12 52454507 52454528 CCAGATGATTGAGAAGAAGCAG 59 52454582 52456682 ACCTGTGACAAACAACCCA 60 NA Rattus norvegicus 81 LOC100910813 ENSRNOG00000048571 ENSRNOT00000071722 1 1 1 80 9 44579220 44581018 GATGAATTGTGGGATCCACG 59 44579159 44579178 TTGATGAGGATCCGGTAAGG 59 NA Rattus norvegicus 81 Gabbr2 ENSRNOG00000008431 ENSRNOT00000011573 1 1 1 80 5 62287317 62290146 AATGAAGATCACAGAGCTGG 58 62287256 62287276 ATGTATGTGGTCTTCTCTGGT 59 NA Rattus norvegicus 81 Gabbr2 ENSRNOG00000008431 ENSRNOT00000011573 3 1 1 80 5 62287316 62290145 ATGAAGATCACAGAGCTGGA 59 62287255 62287275 GATGTATGTGGTCTTCTCTGG 58 NA Rattus norvegicus 81 Tmem182 ENSRNOG00000028945 ENSRNOT00000049349 3 1 1 80 9 47572632 47586595 CATACATTGCCTCAGGTGTC 59 47586638 47586656 TTTCCATGTCAGACACTGC 58 NA Rattus norvegicus 81 Aebp1 ENSRNOG00000013720 ENSRNOT00000018846 1 1 1 80 14 86104761 86105760 CCAACTACGATGACTTGGAC 58 86105801 86105821 TTTCTTCATCCACCTCTTGTC 58 NA Rattus norvegicus 81 Msi1 ENSRNOG00000001156 ENSRNOT00000001532 1 1 1 82 12 46916222 46917734 AGCCTAAGATGGTCACTCG 59 46916158 46916176 ATAGTGCTTCACGTCCTCC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086,ENSRNOT00000043518 1 2 4 80 8 39220708 39221102 CTATTAAGAATGAGGTGGCAAGTG 60 39220651 39220670 CCCAAGTCGAATGAAACGTG 60 NA Rattus norvegicus 81 Als2cl ENSRNOG00000033921 ENSRNOT00000046745 1 1 1 80 8 119162052 119162074 CATCAAATCCTATACTGACTGCC 59 119162112 119162430 TGACTTCTCCAGAACTCACTC 59 NA Rattus norvegicus 81 Gtf2h2 ENSRNOG00000018230 ENSRNOT00000061183 2 1 1 80 2 30506464 30506625 ATGACCTCATCAAGACCCTG 59 30506403 30506422 CAGTACAAACTCGAACCTCC 58 NA Rattus norvegicus 81 RT1-CE5 ENSRNOG00000000723 ENSRNOT00000080987 3 1 1 60 20 4896335 4896353 CAGACACAGATCGTCAAGG 58 4896293 4896312 CTAGCAGATTCCTCAGGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr729 ENSRNOG00000006771 ENSRNOT00000008864 1 1 1 60 3 78885479 78885497 CAGTGGTGTGATTTGCCTG 60 78885437 78885456 CAGGATGACAATGTAGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000081724 3 1 2 80 1 64851914 64851933 TACAGGATTAAACTGGGCAC 58 64851975 64852633 GTAAGATGAGGGAACTGCTG 58 NA Rattus norvegicus 81 Ubxn8 ENSRNOG00000015109 ENSRNOT00000020347 3 1 1 81 16 62264969 62264988 CAAGAAGACAGAACTTGCCT 58 62265032 62266818 AAGTCAGGAACCTCCTTCC 59 NA Rattus norvegicus 81 Ccrl2 ENSRNOG00000033234 ENSRNOT00000044467 2 1 1 147 8 119326206 119326224 TTTATCTCGCCAGCTTGTC 58 119325753 119325771 ATTATCCATCGGAGGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 3 2 2 80 2 30536867 30536887 CCACTATGAAACCGACTACAC 59 30534400 30536827 ATAGGTGGATATTCCCTGAGC 59 NA Rattus norvegicus 81 Kif15 ENSRNOG00000060356 ENSRNOT00000089278 2 1 1 80 8 132072779 132075912 AGACAAATGACAAAGGTCTGC 59 132075953 132075972 TTAACTTCTCGGTGCTTGTG 59 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 3 1 1 65 1 72420430 72420448 ATCCGAAAGCTAGGTTCCG 60 72420477 72420952 TTGACCTCCTTGTCGTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Izumo1 ENSRNOG00000024678 ENSRNOT00000033278 3 1 1 80 1 101608130 101608149 AAAGCCGCCTCTTAATACTG 58 101608190 101608790 TTCTAAAGTGAAGTACCGAGG 57 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 3 1 1 70 2 223029604 223044904 GCCATGAGATGTGACATCC 58 223044938 223044956 GTGACTCTGTCTCCCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Cenph ENSRNOG00000018615 ENSRNOT00000025129 2 1 1 80 2 30768621 30768641 GTGGTAAAGGCCATGAAAGAC 60 30767169 30768579 AATAAGGCCCTGGAATGCA 59 NA Rattus norvegicus 81 RGD1304554 ENSRNOG00000042925 ENSRNOT00000067297 3 1 1 102 8 37015403 37016050 CTGTATGCAAACTGCTTTAGC 58 37015321 37015339 TTCACCATCTTTGGCTGTG 58 NA Rattus norvegicus 81 Fam159b ENSRNOG00000013372 ENSRNOT00000017870 3 1 1 89 2 34963072 34963090 GCAGACCTCAAGTACTGCT 59 34957987 34963019 AATCAGAGCACCAATGCTG 59 NA Rattus norvegicus 81 Vom1r109 ENSRNOG00000047242 ENSRNOT00000070823 2 1 1 60 1 68239908 68239928 TCCAGTACATCCATGATTGTC 58 68239949 68239968 TGTGAATGTGTTGAACCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx29 ENSRNOG00000010369 ENSRNOT00000013854 3 1 1 80 2 44824741 44824760 GCTCTGAGATCTCCTATTGC 58 44824800 44832850 TTAATTCCTGCTTCACATCCTC 59 NA Rattus norvegicus 81 Zfp710 ENSRNOG00000014278 ENSRNOT00000064034 3 1 1 109 1 141861563 141861581 GCTCAAGCACCAGAATGTG 60 141861654 141865612 ACTCCTTCACACCCTTGTG 60 NA Rattus norvegicus 81 PCOLCE2 ENSRNOG00000046848 ENSRNOT00000074047 1 1 1 80 8 103466651 103470021 CGAAGAACCAGCTCATAGAG 58 103470063 103470082 CAGCCACGTAGTCATATCTG 58 NA Rattus norvegicus 81 Cd82 ENSRNOG00000000047 ENSRNOT00000000052 1 1 1 80 3 82338673 82342677 CAATCTGCTGTTCTTTATCCTG 58 82338614 82338633 GAAATGAAGCTGCTCTTGTC 58 NA Rattus norvegicus 81 Gclm ENSRNOG00000013409 ENSRNOT00000018343 3 1 1 84 2 225843315 225843863 GTTGACATGGCATGCTCAG 60 225843905 225843929 GATTAACTCCATCTTCAATTGGAGG 60 NA Rattus norvegicus 81 Agpat1 ENSRNOG00000000437 ENSRNOT00000088079 2 1 1 83 20 4375367 4375385 GGTTGGATCCTCTTCCTGG 60 4375430 4375651 ACGCAAGATCTTCATGTTCTC 59 NA Rattus norvegicus 81 Fez1 ENSRNOG00000006075 ENSRNOT00000008285 2 1 1 80 8 39322024 39331479 AGCTCTGACACTGAGATCC 59 39331522 39331541 CTCGTTGATACCAGAGTCGT 59 NA Rattus norvegicus 81 Cyp11a1 ENSRNOG00000008074 ENSRNOT00000010831 1 1 1 80 8 62799856 62801709 CTGTTTAAGAGTTCAGATGCC 57 62801751 62801769 GTTCTTGATGGAGTCAGGG 58 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 3 2 2 80 3 82926083 82935118 ATCTTTGTGCAGAGTGTCCT 59 82926022 82926041 AGAGGGCTTATCCAAAGTCG 60 NA Rattus norvegicus 81 Snx33 ENSRNOG00000017382 ENSRNOT00000023428 1 1 1 87 8 61592713 61592732 CTCTTCCAAATGCTCGACAC 59 61586217 61592663 CAAAGGCACCTTTCTGCAG 60 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 3 2 2 80 8 22800759 22800777 CATATCAGCATGCTTGGCC 60 22799851 22800719 GTATAAGCCACTTTCAGTTCTCG 60 NA Rattus norvegicus 81 Nanp ENSRNOG00000008307 ENSRNOT00000011315 3 1 1 105 3 146801225 146812892 CATGTTGGAGGTAATAAAGCTC 57 146801141 146801159 ATGAAAGCACTCCTTGCTC 58 NA Rattus norvegicus 81 Polr1e ENSRNOG00000012664 ENSRNOT00000029704 1 1 1 80 5 60580478 60581256 CCTTCAGGGACAAGTTGGA 59 60581300 60581318 TCATTCTCCGGGAGTTCAG 59 NA Rattus norvegicus 81 Dbr1 ENSRNOG00000014588 ENSRNOT00000019769 1 1 1 80 8 107836211 107836229 AAAGAACAAGCAGGCAAGG 59 107836269 107836507 CTCTAACACCTGAAGAAAGTCTC 59 NA Rattus norvegicus 81 Arrdc1 ENSRNOG00000007622 ENSRNOT00000010169 2 1 1 80 3 2130722 2130820 ACTATTACCTTCAGGTCTCCA 58 2130662 2130680 GGTTCACAGCAATATTGCC 57 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 1 2 2 81 3 161237439 161238011 ACCCTCATGATGTCTGGTG 59 161238056 161238074 CATGGATGGTTCCTACCCA 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 2 3 8 80 20 4482893 4482913 ACAAATTCTTCCTCTATGGCC 58 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Dclk3 ENSRNOG00000033026 ENSRNOT00000044742 1 1 1 80 8 119739940 119739960 CTCTTCAACATCATCCAGCTG 59 119740001 119743479 CAGATCTTTGGCAGCATCAG 59 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 2 2 2 80 2 211787069 211787087 TTCCAGATGAACTTGGTGC 58 211786170 211787028 TGCTATACCCTGATACTTTGGA 59 NA Rattus norvegicus 81 Usp53 ENSRNOG00000014660 ENSRNOT00000066581 1 1 1 80 2 227129491 227129512 TCAAGGTGATAACATTTCCTCC 58 227128662 227129453 TCATGGCTTAACTTAACTGGTG 59 NA Rattus norvegicus 81 LOC691807 ENSRNOG00000014654 ENSRNOT00000019647 3 1 1 81 2 227095726 227095744 CCTACTGGCTGGATCTCTG 59 227095788 227096487 CAAACCAATCAGGGCAAGAG 60 NA InUTR Rattus norvegicus 81 Wwc2 ENSRNOG00000013248 ENSRNOT00000017966 1 1 1 80 16 47482251 47483465 AGCATTTCTGGAGATATTGGG 58 47483506 47483525 GGCTTCTTCATACTGGAGAC 58 NA Rattus norvegicus 81 Ptbp2 ENSRNOG00000010827 ENSRNOT00000015036 1 1 1 80 2 223263382 223263502 TCCAACATCCCTCCTTCTG 59 223263320 223263340 CTTAAATGCTTTCACAGTGCC 59 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 1 2 2 80 8 62407327 62407347 GAGTTTGGTGGACTATCTTCG 59 62407167 62407289 CAGACGTCTAGTGAGAATTTGAG 59 NA Rattus norvegicus 81 Esm1 ENSRNOG00000010797 ENSRNOT00000014559 3 1 1 83 2 45104821 45108288 TCTGTAAAGACTGTCCCTACG 59 45108333 45108351 TCACCCTGTCACATATGCC 60 NA Rattus norvegicus 81 Tnfsf15 ENSRNOG00000008930 ENSRNOT00000011845 1 1 1 80 5 79558686 79569770 AAAGACTGTATGTTTCCGACTG 59 79557647 79557665 CTTGTCTCTGGAAGGTGTG 58 NA Rattus norvegicus 81 Dkk4 ENSRNOG00000019267 ENSRNOT00000026067 2 1 1 89 16 74262449 74262467 AGAGGGAACCACCAAATGG 60 74261541 74262396 CCCTCCTGTCCCTTATTGC 60 NA Rattus norvegicus 81 C2cd4b ENSRNOG00000009106 ENSRNOT00000012048 1 1 1 99 8 73593648 73593666 GAAGGAGTCGCTCTTCCTC 60 73593729 73593747 CTCAGAATCTGAGGCTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdfy4 ENSRNOG00000029662 ENSRNOT00000043811 1 1 1 80 16 9350431 9351203 TGTGCTAAGACAGTTCCTAGAC 60 9350372 9350391 TGCCCAGGAGATAAATGGAG 59 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283,ENSRNOT00000057078 3 2 2 85 20 49319359 49319380 AGCACTTTCAGAAGGTTATGAG 59 49319425 49325062 TGGATAATGCCATTTCAGGG 58 NA Rattus norvegicus 81 RGD1311251 ENSRNOG00000007266 ENSRNOT00000009562 2 1 1 80 8 57988031 57988051 CCAAGATCATTCAAAGCAGGA 59 57988091 57992104 TGGAACACGGAAACATTAAGG 59 NA Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 2 1 1 62 16 75120348 75120367 TGTAGTTGAACTGCCATCAG 58 75118126 75119965 CCTCCTGGAAATGACTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Rcc2 ENSRNOG00000006327 ENSRNOT00000008940 1 1 1 80 5 159226783 159226801 GAGTTCAGCATGCTGATGG 59 159226845 159229023 TGAGTTGTGTCCCAGTTGG 60 NA Rattus norvegicus 81 RGD1304810 ENSRNOG00000011253 ENSRNOT00000015062 1 1 1 80 16 59324556 59324578 GGTATGTGACAACCTTAATCTCC 59 59319093 59324522 GAGAAATGATGTATGACTCCTATGG 59 NA Rattus norvegicus 81 RGD1304810 ENSRNOG00000011253 ENSRNOT00000015062 2 1 1 81 16 59324557 59324581 CATGGTATGTGACAACCTTAATCTC 60 59319095 59324524 GAAATGATGTATGACTCCTATGGAG 59 NA Rattus norvegicus 81 Zfp105 ENSRNOG00000032919 ENSRNOT00000040625 1 1 1 80 8 132002381 132002399 GGGAACATCAAGAACTGGG 58 132002443 132004685 TTTCTGACCCTTCTCCTCC 58 NA Rattus norvegicus 81 Cyp1a2 ENSRNOG00000016173 ENSRNOT00000021653 1 1 1 80 8 62455692 62455710 CAAAGACAACGGTGGTCTC 59 62454688 62455649 ACTGTTTCAAATCCAGCTCC 59 NA Rattus norvegicus 81 Defb10 ENSRNOG00000038148 ENSRNOT00000058059 3 1 1 80 16 75198325 75208182 TATGACACTCCAGTTGTTGGA 59 75198265 75198283 GAACCCTTCAAAGAGTCGG 58 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462,ENSRNOT00000010440 1 2 2 80 5 128656355 128656373 CCCAGTTCTTCATCCATCC 58 128656416 128659611 CAAGCTGATACTCACTGTCC 58 NA Rattus norvegicus 81 Tpte2 ENSRNOG00000024837 ENSRNOT00000034670 3 1 1 80 16 74601339 74602128 CAAGTCTACAATCTATGCAGTGAG 59 74601282 74601303 ATCATCAATCATGATTCTGCGG 59 NA Rattus norvegicus 81 Olr1690 ENSRNOG00000046933 ENSRNOT00000049250 1 1 1 60 20 775983 776003 CGTTATACACAGCAAGTACAC 57 775943 775964 AACTGGTGAATTATCTTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msr1 ENSRNOG00000012779 ENSRNOT00000017339 1 1 1 80 16 56868973 56874756 AGCAACAGGAGGACATCAG 59 56868911 56868933 CTTGTTCTTCTTTCACAGACTGG 60 NA Rattus norvegicus 81 Olr1668 ENSRNOG00000053746 ENSRNOT00000089844 2 1 1 60 20 322473 322493 TGTCTATTATGTGGCTGACTG 58 322433 322454 TGTAATGTAAGTGTAGCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1673 ENSRNOG00000047925 ENSRNOT00000051646 1 1 1 60 20 422063 422084 CAAACCTCTACACTATACCCTC 58 422024 422043 AATGGACACTAACAGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam149a ENSRNOG00000021693 ENSRNOT00000034448 3 1 1 81 16 50085121 50085400 TAAATTCTCCAGCGAGTCCC 60 50085444 50085462 GTCAGGCCATGAATTGTGG 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000084809 1 1 3 86 3 80677136 80677155 CAAATGCCTAACTCCGCAG 59 80677205 80677223 TCTCCTGGTTAAAGGCCAC 59 NA InUTR Rattus norvegicus 81 Plat ENSRNOG00000019018 ENSRNOT00000025763 3 1 1 80 16 74105716 74107028 ACAATTATTGCCGGAACCC 59 74105654 74105675 AATATTCCCATGTCAGCTTTCG 59 NA Rattus norvegicus 81 Ptprd ENSRNOG00000005711 ENSRNOT00000075474 2 1 1 80 5 92995681 92995700 TGCCTTTGAAGAAGTCTCGT 60 92990156 92995641 CCTTAAGCAGCTCATCTAACTC 59 NA Rattus norvegicus 81 Col15a1 ENSRNOG00000039197 ENSRNOT00000017217 2 1 1 80 5 64511542 64511561 AGACGGAATCAGCACTATGG 60 64511601 64513196 TTGATCAAAGAACTGGACAGGA 60 NA Rattus norvegicus 81 Atp5e ENSRNOG00000049912 ENSRNOT00000071913 2 1 1 67 3 172564624 172565924 CTGGACTCAGCTACATCCG 60 172564575 172564593 CTCAGTCTTCAGGGCATCC 60 NA DesignRelaxed Rattus norvegicus 81 Col4a2 ENSRNOG00000023972 ENSRNOT00000057461 3 1 1 80 16 83397869 83400887 AGGTGTTAAAGGAAACCGAG 58 83397808 83397826 CCCTTGATGTCCTTCATCC 58 NA Rattus norvegicus 81 AC127963.1 ENSRNOG00000048080 ENSRNOT00000075547 2 1 1 76 3 173838963 173838981 CAAGAAACTCCTGGCTGAC 59 173838758 173838776 TGATGTCTTCCTTCTCGGC 60 NA DesignNoJunction Rattus norvegicus 81 Defb52 ENSRNOG00000038129 ENSRNOT00000043486 2 1 1 80 16 75574264 75574379 TCTTCAACAACGATTACGGG 58 75574419 75574440 TACGAGTACAGTTTGTTCTCCT 59 NA Rattus norvegicus 81 Psma7 ENSRNOG00000056853 ENSRNOT00000082686 3 1 1 84 3 175421140 175421161 AAGAACTACACAGATGATGCCA 60 175420667 175421095 CTGACTGGACCACTTCCAG 60 NA Rattus norvegicus 81 Pdha1l1 ENSRNOG00000014745 ENSRNOT00000019797 2 1 1 88 16 88347281 88347299 CCATGAGGAAGATGCTTGC 59 88347127 88347145 ATTACGGGAAGCTACCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cox4i2 ENSRNOG00000007827 ENSRNOT00000010418 3 1 1 83 3 148241188 148241206 GGAAGACAGTAATGGGCTG 58 148241253 148245127 TAGGGAACACATAGACCCG 58 NA Rattus norvegicus 81 AABR07026311.1 ENSRNOG00000038375 ENSRNOT00000058436 3 1 1 93 16 71438656 71438676 CTGGAAAGTCTGGAAAGGC 59 71438732 71438751 TTCAGGTGTCGATGAATACG 58 NA Rattus norvegicus 81 Slmo2 ENSRNOG00000046644 ENSRNOT00000075573 1 1 1 80 3 172570791 172570812 CATTGTGAAGTCTGTAAGTGTG 58 172569544 172569732 CCCATAAATCCATCATGCAC 57 NA Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000051590,ENSRNOT00000080707 1 2 2 64 3 160110253 160110271 AAGCTAGCTGGAGACATGG 59 160114450 160114468 GTACTTCCCTCTGCCTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000051590,ENSRNOT00000080707 2 2 2 102 3 160110215 160110233 CTGACATCCAGGGTGACTC 60 160114450 160114468 GTACTTCCCTCTGCCTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Clp1 ENSRNOG00000007416 ENSRNOT00000009726 2 1 1 80 3 72128102 72128901 CTAGTATTTAGGCACAGCAGC 59 72128042 72128060 TTCAAACTTGGTCGTTGGC 59 NA InUTR Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 1 2 2 80 16 90332940 90332961 CCTTTGCCTCTTCATCTATACC 58 90333000 90336983 AGAGAAATGCCAATGCTATCG 59 NA Rattus norvegicus 81 Gins4 ENSRNOG00000018040 ENSRNOT00000024301 1 1 1 80 16 73585103 73585122 ACTCTGATGAGGGTAGTGAG 58 73585165 73587901 TTTCATTCATCCAGGCCTG 58 NA Rattus norvegicus 81 Mrpl41 ENSRNOG00000029875 ENSRNOT00000044802 3 1 1 104 3 2181889 2181907 TTTAAACGGCTAAGGCTGC 59 2181590 2181821 GGATAAATCAGCTCTGGGC 58 NA InUTR Rattus norvegicus 81 Erich1 ENSRNOG00000042114 ENSRNOT00000064468 1 1 1 87 16 80616338 80616356 AGACTCCAGCTTTGGACAC 60 80616407 80631358 ATGTCACCAGCTGTCAGAC 60 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 1 2 2 80 16 71245757 71245775 GGAAAGTGGTCCTTGAGAC 58 71245816 71245838 GGTGTCAATCCAAAGTAAACTG 58 NA Rattus norvegicus 81 Tp53rk ENSRNOG00000007285 ENSRNOT00000049082 2 1 1 60 3 163554939 163554957 GAGAAAGCCTTCCTCAGCA 60 163554978 163554999 TCTTCAGAAAGGCTTCAAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nat3 ENSRNOG00000029977 ENSRNOT00000043305 3 1 1 60 16 23903650 23903672 CAATCATCTTCTTTACTGGGCTC 60 23903612 23903631 TCCTCCTAACATTGTGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364509 ENSRNOG00000050067 ENSRNOT00000074978 3 1 1 60 16 61874362 61874386 CTAAAGTTGATTGGAGAGTATGGAC 59 61874326 61874346 TAAATTTGACCCTCCACACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spi1 ENSRNOG00000012172 ENSRNOT00000016306 1 1 1 80 3 79936326 79936344 CACTGGAGGTGTCTGATGG 60 79936388 79937028 TCTTCTTGCTGCCTGTCTC 60 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 2 1 1 63 16 82439226 82439361 CTCGTCATATTTCCTGAACTGTG 60 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC685718 ENSRNOG00000030299 ENSRNOT00000048912 1 1 1 60 16 13950513 13950533 GCAAGATGGTCAGTAGAACAG 59 13950554 13950573 GAAGCATTTCCACCAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdca7 ENSRNOG00000001514 ENSRNOT00000002066 1 1 1 80 3 59156093 59156111 GTGGAAACATCGTCATCCT 58 59156155 59159003 GTTGAACTGCAGTCTTGTG 57 NA Rattus norvegicus 81 LOC100909556 ENSRNOG00000045875 ENSRNOT00000072097 1 1 1 109 12 20809022 20809597 AACCCTAGTAAGGCTCCTC 58 20808931 20808949 GAAGACATGGAAGGCTGTG 59 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000071923 2 1 2 80 19 36364778 36364797 AGTACTTCAACGACTGTGGT 59 36327107 36364739 CTTCACTATATCTGTGGAACAGG 59 NA Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 2 2 2 81 2 41592184 41684263 GCTGTACAAGATTGGTCAACTC 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 2 2 2 81 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856015 150856033 GCAGGATGAGCAAATCGAC 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000091593 2 1 2 90 8 108791314 108801359 TAAGGACACCTGGCATTGG 60 108791242 108791261 TCTCCTGGATCAACAAAGCT 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 2 2 2 80 5 171629708 171630172 GTAAGGTCAAGTCCCTCCC 59 171629646 171629665 TGGATTCTTCCAAGAGGAGG 59 NA Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 1 2 2 80 2 143586944 143589976 TTACCAACTAATTGCCGACC 58 143590016 143590037 CCTTCTTCAAAGTAGCTCATCC 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 3 2 2 80 2 57233057 57233077 CCAGAGATTGTGTACTCAGGA 59 57233116 57235984 GCTAGCATCCCAAATATTTCCC 60 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 3 2 2 83 3 110552679 110552697 GACCCTCTGTGACATCCAC 60 110552083 110552633 CTTTGACATCACACCTTCGG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000089166 3 1 2 114 5 136086855 136086873 CAGACTCTCAAGACTGCCC 60 136074951 136083995 TCGAAGAGTCTTCATACTGCA 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 1 3 3 146 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000035125 1 1 2 143 1 56163446 56168109 GTCACGGCTAAGGAGACAG 60 56162282 56163340 TCATAGAAACCTGAGCTGGG 59 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 3 2 2 83 5 14611278 14611998 GGACATAGTTTCAGGCACC 58 14612045 14612063 AGTTGGATCAACTCGACCT 58 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453 2 1 2 80 X 1769914 1769932 ACGAGAGTATGGCAGTCAG 59 1768310 1769870 GCCTCGTAGGAATCCTCTG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 2 2 6 80 1 76613069 76614122 TATCCCAAGTCAGGAACGA 58 76613007 76613025 AGATTGGATCCACTTGGGA 58 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 2 2 2 80 17 6799339 6799358 CTGAAATGTTTGAAGCCGAC 58 6799398 6802163 TTTCATAATCCTGTCTGTGCTC 59 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 3 2 2 81 17 6799338 6799357 TCTGAAATGTTTGAAGCCGA 58 6799398 6802163 TTTCATAATCCTGTCTGTGCTC 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 2 2 2 80 2 183529494 183534332 AACACATATAAGTGTACTCGGC 58 183529435 183529453 AGCTTCAAGTTCAAGGTCC 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000018532 3 1 3 81 1 178409427 178409445 GTGATACTTATCTGGCGCA 57 178409490 178430980 CATCCTGCTTAACTCCCAC 58 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 1 2 2 92 X 31130158 31130176 GCAAACTCTTGGAAGGCTC 59 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 3 2 2 80 X 13277354 13278850 GATGCTGAAACTGTATGCCA 59 13277293 13277314 CGAAACACAAATCCAGAAATGC 60 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 3 3 3 80 9 94959475 94959493 GAGAAAGAAGAGGCATCGC 59 94959536 94961821 CCTCCTTGATAATGGTGCTG 59 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 3 2 2 83 1 101456401 101456419 CATCCACCAAGAAGCTGAG 58 101455556 101456354 CAGCAATCATCCTCTGCAG 59 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000085079 2 1 2 80 X 14905437 14909620 GTTCATGACAGTGAAGGAGC 59 14905376 14905396 TATCACTCGAGTCTTCCTCTC 58 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146 1 1 2 80 X 14908900 14909614 GACAGTGAAGATGAATGTTCTG 58 14908502 14908520 ACTTATGGTCACTGATGCC 57 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228 3 1 2 80 6 26383464 26384338 GGAAGTTCTGAAGGAGCCA 59 26383402 26383422 GACATGAGAAATGCCATACGA 59 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000084214 2 1 2 84 12 51961622 51963148 ATGATGAGGTAAAGGTTGTGAC 59 51963193 51963211 GAAACATTTGGCGGAAGCT 60 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 3 1 1 61 1 81502328 81502346 CTGCTTCGATGGTAACGTC 59 81503311 81503329 CTCGGACAGGTAAGGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245 2 1 2 97 1 101474441 101505689 CATGACTCCCTAGGTGTTGG 60 101505749 101505767 TAGCTCATGGTGACAAGGG 59 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245 3 1 2 98 1 101474441 101505689 CATGACTCCCTAGGTGTTGG 60 101505749 101505768 ATAGCTCATGGTGACAAGGG 60 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014030 2 1 3 82 4 156411641 156412382 TAACTCTGAGGGCACATCG 59 156411577 156411596 CAAATTCCACCTGAAGAGCA 59 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000081920 1 1 2 159 17 9741328 9741435 CTCCCATATTGCAGAGCAG 58 9741595 9741613 ATGTAGGGATGCGATCCAG 59 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 2 2 2 82 14 7029552 7029573 AGATTTAACTTGTACCCACCAC 58 7029615 7030605 AAAGGAATCGGGATCAGAGG 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386 1 1 3 132 4 7207004 7207022 AGTTACTCAGTTCCAGCCC 59 7205440 7206908 TCCTCTGTCTCTTCAGCAG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 3 2 2 80 6 21988211 21989623 CAGAAGGACAGAAGGAGTCC 60 21988150 21988169 GCCACGTAATCCAGTAACCT 60 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862 1 1 2 80 13 35599666 35599685 GAACACAGTAAGGGTTCCTC 58 35597516 35599626 TCTCTTGTAGCCTTATGTACAG 57 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862 2 1 2 80 13 35599665 35599683 ACACAGTAAGGGTTCCTCC 59 35597514 35599626 CTTCTCTTGTAGCCTTATGTACAG 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587 2 1 3 86 15 39735107 39735126 GAGTAACAGTCAGACACTGG 58 39732057 39733263 GGTGTATGATTGCTATGTTGAG 57 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 2 2 2 80 17 9992754 9996714 GAAGATGCTGAAAGACAATGC 58 9992694 9992716 CTTCCGATTAGCTTCATCATCTC 59 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396 2 1 2 120 4 145239943 145239961 ACTGAACCCAGACTTCGTG 60 145240534 145240960 GAAATCCTGCGGTTTGGAG 59 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000022251 3 1 2 81 17 38993246 38994443 TCAATCTTGCTCCTCAGGG 59 38994487 38994506 TATGGGTGCAGAGGATACCT 60 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000067037 1 1 2 180 13 88638558 88641967 TTCTCGGACAGTTGACCAC 60 88638396 88638414 ATTCCTAAGGTGCTGGCTG 60 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 3 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413155 39413173 ACATGCAGGAATTGATGCA 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076661 1 1 4 80 1 216382702 216382721 CTCACATCACTTGTGATCCC 58 216382763 216394200 AAATGTTGACTGAGCTGTCG 59 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 2 2 2 81 10 37285803 37286422 GGAGATGGAGAAACCCGAG 60 37285740 37285759 CATATTCTGGTGGCACAACG 60 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 2 2 2 80 12 2095647 2095665 ATTGCGAGTACCTTCGTCC 60 2095706 2096450 AACCCACATCATAGATCTGGTC 60 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108 1 1 2 81 9 47176655 47176674 AAAGTGTTCTGGATTGAGGT 57 47176715 47178144 CATAGAGCTTTCCATCATTCTG 57 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615 2 2 10 88 2 231232985 231233004 CAGTCAACATTGAGGATGGG 59 231226955 231232935 ATTGTTGTCCTCTGACAGCT 59 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 1 2 2 80 11 57492805 57493285 GACCACAGATACTGGTTGGA 59 57493328 57493346 CTATGACCTTCTCTGGCCG 60 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 1 2 3 80 5 48281271 48282412 CCTTCATGGAGCATAAGGAC 58 48282455 48282473 TAGAGAACCTATGGCTCCC 58 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000041271 1 1 3 80 5 48285684 48285704 TTCATCTGGAAAGACTATCGC 58 48285743 48285765 TGTTGTAGGTAATCGTCTTGTG 59 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 3 2 2 120 2 188657364 188657382 TTCGAGTTCTTGCCTGGAG 60 188656573 188656933 GAGCTGACTCGGATCTGTC 60 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 2 2 2 81 1 207756473 207756491 CATCAGCAACCCTTACCAG 58 207752091 207756429 CAGAAACACAAAGGATGCAC 58 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 3 2 2 80 11 60074813 60084682 ATCTATGGGAAGGGAAGGAC 58 60084724 60084743 CATCATCCTTGGTAACTGCA 58 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 2 2 2 80 10 91017976 91018280 TTACCTGGAGGTGTATAACGAG 59 91017917 91017935 TTATCAGGGTCCTCTCGGA 59 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924 3 1 2 85 X 34630171 34661123 CTCCTAACGTCCCACTCTC 59 34661171 34661190 GAGGGAACATTGTGGATTGG 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000079947 3 2 3 92 4 157239591 157239611 GCATAGCAAGAACAAGAAGGA 59 157239312 157239538 AGGCTGATGTTCCTCTTGAG 60 NA Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 1 2 2 80 4 78322446 78322466 ATCTGAACTACAATGGAAGCC 58 78322508 78325808 TATTCCAAGCTCATGGCTG 58 NA InUTR Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 1 2 2 80 14 88573312 88573330 GATGACTCTGCTGAGGAGG 59 88573374 88573497 ATCCTTCAACTCCAGCTGG 59 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432 2 1 2 88 4 119915817 119915835 TTACTTCGAGACCAGTGCC 59 119911847 119915767 CTTCCGTTTCCTGTTTAAGGG 59 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 3 1 1 133 1 198690904 198690922 GAAACTCAAGAGCCCTGTG 59 198700240 198700259 CATGTTTGGCTAGTGTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 3 1 1 69 3 147985563 147985581 GTTGCTAACTCAGGTGACC 58 147982495 147982515 CCCTAAATTATCCTTCCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 3 2 2 85 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613275 TAGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 3 2 2 83 13 98525067 98525085 CTCTGATCATGATCAGCGT 57 98522387 98525022 CATGGATGAACTTGTAACAGC 58 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 2 2 2 80 1 144161631 144161650 TTACCAGTAAAGCTGTTGCA 58 144161691 144163924 CTAGCTTAGCTCTGTATGCTG 58 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327 2 1 2 80 16 54848533 54848554 TCAACATCATGTTTACTCCTGC 59 54848593 54850120 CCATTCTCATTGAGTTCTCGT 58 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000086899 3 1 2 80 16 54792710 54792729 GGAACTTTGTATCTGACGGC 59 54792768 54794501 GTGAAGTATCCAGGTTTCTTTCC 60 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492 1 1 2 84 3 151359871 151359890 TGGAGAGTGTCTTCAAGCTG 60 151357130 151359825 CATGTGAGGCTGTCAATGAG 59 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000079498 3 1 2 86 1 73660394 73660888 AAAGGAAGGGCTGAATCTG 57 73660159 73660177 AATGATCCTGGCTGAACAC 58 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000068493 2 1 2 99 10 56650280 56650298 TCATCATCCTTGGACCCAC 59 56650360 56650683 TTAGGACGTGTCGTATGAGG 59 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228 1 1 3 80 9 10359439 10363407 AGAACTGTCAGGGAGATCTG 59 10359302 10359321 GGGCAATAGTTTCCATCCTC 58 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000078436 2 1 2 80 6 102357139 102357157 TGGCAATGAGACAATAGCC 58 102356880 102357099 CTACTAGAAACGCAATCCATAGG 59 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 3 1 1 60 10 40193202 40193220 TCAAGGAATCCACACTGAC 57 40184577 40184597 TGTAAGAAGATCTTTCCTGGG 57 NA DesignNoJunction Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000087416 1 1 3 80 5 142702815 142702834 ATCATGAGGAGAAAGAACGG 57 142702877 142703518 TGACCTCCATGTATCTCGT 58 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 2 2 2 80 1 274330905 274333231 GCGAGGAATTGCTAGATTGG 59 274333274 274333292 GTAAACTGGCTTCCTCGAC 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 1 1 1 60 18 35196573 35196593 TTCTCCATCATGCTTCATTCG 59 35197262 35197280 TAGGCCACCAAACTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000081105 3 1 2 82 17 42634635 42634655 GGAAGTTAGATGTGATGACCA 58 42628291 42630372 ATCCATTTCCACAATTGCTG 57 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000051497 1 1 4 82 10 82091972 82091995 CAGGTTTATTTCCCACGGC 59 82091908 82091926 CAATGTCTGCATGGTGGAG 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000036050 2 1 2 149 5 33603129 33603148 GGATCCAAACTTCTACAGCA 58 33603259 33603812 GCAGCTTCTGTCTGTATCTG 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000015564 2 1 3 81 2 231059958 231059976 ACAACTATGCTGGCTACGA 59 231063292 231078912 TCTCAGTTGACTCCTTTACCC 59 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000020717 2 1 2 82 2 187081480 187081498 CTTGGAGGACAAGAAGCGA 60 187081544 187086198 CATTGCCTGGCTTAATGCT 59 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 2 2 2 80 5 24454643 24457631 ATTTACTTTGCCACCAACCA 58 24454582 24454602 ATTGAAGAAGTCAGAGCACAC 59 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 2 1 2 103 1 267607701 267607720 TTCTGTCCCTTTGCTCAGAG 60 267608875 267608894 TGTTTAAGATGTCACTGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 3 2 2 81 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093298 TAGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 2 2 3 80 10 56717027 56717045 CTGAGGCTGACCAGTACTG 60 56717087 56722805 TTACAACGAATTCCTGCTCCT 60 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 3 2 2 80 10 105216096 105216116 TGAAGATCGACAAAGTGAGGA 59 105131424 105216055 TTTCTTCACTTTCAGCCTGC 59 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089 2 1 2 124 11 38678728 38678749 TGGGTAAGGAATGTACTTTCTC 58 38677732 38678644 CTTAATCCTTGGGCAGAGTG 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 2 3 3 92 7 116158804 116159099 GGATATCATCTCTGAGTATGTCAC 58 116158735 116158753 TCGGATATGACACTCCAGG 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 3 3 3 94 7 116158804 116159099 GGATATCATCTCTGAGTATGTCAC 58 116158733 116158752 TCTCGGATATGACACTCCAG 58 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 1 1 1 67 5 25168641 25168660 TGGTAAGAGACAGGAACCAC 59 25172438 25172456 TGAACTGGTACCAGCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 2 1 1 68 5 25168640 25168659 CTGGTAAGAGACAGGAACCA 59 25172438 25172456 TGAACTGGTACCAGCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Sart1 ENSRNOG00000020475 ENSRNOT00000027811 1 1 1 80 1 220764597 220764732 GAGCTCATGGACTTTGAAAGG 59 220764537 220764555 CCAGCCAATGTTCTCTTCG 59 NA Rattus norvegicus 81 Sart1 ENSRNOG00000020475 ENSRNOT00000027811 3 1 1 80 1 220764256 220764274 ACCATCCTGGATGAAGAGC 59 220763868 220764214 CTCCAACAGTCCTTTGTTCTG 59 NA Rattus norvegicus 81 LOC687441 ENSRNOG00000016997 ENSRNOT00000023028 1 1 1 85 20 6157041 6157247 TCTGGAAGAAGAGCCACAG 59 6156974 6156992 CCAGGGATTTCTTCCTGGG 60 NA Rattus norvegicus 81 Jarid2 ENSRNOG00000045918 ENSRNOT00000070962 1 1 1 80 17 20251945 20278194 AAACAGTGAATGGGCTCCT 59 20251883 20251904 CATCCTTCTCATTCTCTGACTG 58 NA Rattus norvegicus 81 Calml4 ENSRNOG00000038202 ENSRNOT00000009716 1 1 1 80 8 67757630 67760363 CTCATGGAATAGACAAGAACGG 59 67760403 67760422 GGTCCTCTTGCTTGATTTGC 60 NA Rattus norvegicus 81 Olr758 ENSRNOG00000004938 ENSRNOT00000006545 3 1 1 60 3 102659030 102659049 TGATTCATGCAGTGTCTCAG 58 102659071 102659090 TTATAGGGAGCACAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000073209 1 1 2 80 10 59682174 59682192 CCTTATGAAGTGGAGCGGA 59 59682235 59683682 TCATCCTCACAAAGCTCCTC 60 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745 3 1 2 80 17 43332385 43338397 GCCAACAAATGTCTCAAGGAG 60 43338439 43338457 CCATCTTTGCCCAAGTTCC 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284 1 1 2 80 10 103673813 103677407 CTGATAACAGGTATGACAGTGG 58 103673754 103673772 CAGAGATGACTGGGAGGAG 59 NA Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 3 2 2 80 14 108906184 108911070 CAGGGTATTTGTAAAGATGAGCC 60 108911109 108911128 CAAGAGAAACCATGCACTGG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623 1 1 6 80 1 262013615 262013933 TGTGCTTTGCCAAGATGAG 59 262013553 262013572 CAAATTCCTCATCCGTCCAG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000001011 3 1 9 103 20 2083571 2083646 GACAACAGATTGGCTTGGG 59 2083037 2083055 GTATGCACACCACCAAACC 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000052367 2 1 6 80 6 4311886 4315592 GATGAGTGAGAAGAAAGGTGG 59 4307798 4307818 GGAATCGGATGATCTCTAGCA 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000070918 1 2 6 80 6 4312321 4315590 TGAGTGAGAAGAAAGCCCT 58 4307817 4307835 CATGGACCTTCCTGAAGAC 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 3 2 4 80 15 34752192 34752210 TCATGTGACCTTCTGTGGT 59 34752252 34752846 GTGATTTCCCTTCCATGACAG 59 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000084388 1 1 2 80 4 115181587 115181606 GTGTTGAACATCAGTGAGGA 58 115181168 115181546 CCTCATGAAGGTGTTTACCTG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733 1 1 2 83 6 132421373 132425318 CATTCAGTCCAGAAGAGGG 57 132425365 132425383 AATCCACTTGGTCTTTGGG 58 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071863 3 1 2 122 6 132421374 132422184 ATTCAGTCCAGCCCTTCAG 59 132425353 132425372 TCTTTGGGCATGTACATGGT 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000089736 2 1 4 82 17 27513010 27523781 GAGAACTGAGACTTGCCTG 58 27523831 27523849 CTAGCAACTTCCTGAAGCA 58 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000087547 1 1 4 80 X 54235592 54235610 CACCTGGAAGAAAGCTGTG 59 54231732 54235551 CAGAAGATACTAGGGTCACCAC 60 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 3 2 2 80 15 55056796 55056816 TGTCAAACAAGCAAGTCATCG 60 55056856 55058366 AGGCAAATACCTCTCCATCAG 60 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 1 2 2 80 4 79977098 79977117 CTTCGTTTGGAACTCTGAGG 59 79956753 79977057 CCAGATTAACTGTTCTCCCGA 60 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264 2 1 2 83 4 79942677 79945510 GCACTAGCAGAAATGCCAG 59 79942612 79942630 CAAATGGCACAGTGAAGGA 58 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536 2 1 2 81 9 66902635 66903406 CTCCCAAATGACCAGTGTC 58 66903450 66903469 GCTGTCTTCTAGAGCATCTG 58 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000017472 3 1 2 80 4 157234387 157234405 CCGGATCTATCTCACAGCT 58 157234842 157235038 TTAATGAGGCTGTCACTTCC 58 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073 2 1 2 80 16 19389605 19389701 AAACTGAAAGAGGCTGAGAC 58 19389544 19389562 TTCCAGGTCATCGATTGTC 57 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 2 2 2 81 1 37740070 37740273 GGCTGCAAGGTAAAGAGTC 59 37740007 37740027 CACTCTAGGACAGAGGTTAGG 59 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000043271 3 1 2 80 18 29599014 29600515 AAGTGGATGATGAGCATATGC 59 29600557 29600575 CGTAACTGTTGGACATGCC 59 NA Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 1 2 2 80 9 11180002 11180020 ACATGAATGATGGGAGGGT 58 11174730 11179961 ACCCAGATCCATATACTGTGAG 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000079688 3 1 5 84 1 20903358 20916145 ACGGAAAGAGTTCACATGAG 58 20903293 20903311 TCTGTGATTACGCTTTCGC 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000084155 1 1 2 80 6 41838909 41838927 CAACACATCTGAGGACGAG 58 41835611 41838866 GCTCTAGAGGAATCCATCAG 57 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 3 2 2 80 8 111564426 111564446 ACATTCCTCAACAAGTTCCTG 59 111564486 111565553 AAGATTTACAGCACCGATGAG 59 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 2 1 1 61 5 164919055 164919076 CAACAAATGTTTCGATGACTGC 60 164913992 164914011 GGTGGAATTTGGCATAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 3 1 1 62 5 164919055 164919076 CAACAAATGTTTCGATGACTGC 60 164913991 164914009 CGGTGGAATTTGGCATAGC 60 NA DesignNoJunction Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 1 2 2 83 16 19663400 19667055 AGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409 2 1 2 80 4 175852294 175855537 TATGTAGACCTGAACAGTGTCC 59 175855577 175855596 ATTCACAATGAAGCTGAGCC 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 3 1 5 83 1 80543677 80543695 TTCCAGTGACATCCCTTCG 59 80534709 80534948 TCTCTAGTGTAGAAGACTCCC 58 NA DesignRelaxed Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 1 1 1 102 1 264893920 264893939 CACAAAGGACAGGTTCACAG 59 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733 3 1 2 80 1 44019402 44045284 AACAGCGAGTTGTATTCGC 59 44045326 44045346 GATGGCTGCCTTTGTAATCTG 60 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000083425 2 1 2 87 1 44065876 44067244 TTCACCAGGAAGTTGATGG 57 44067293 44067313 GTTGAGGAGTAGGAATTTCCT 57 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000073148 2 1 3 81 10 42723394 42723413 GAAAGTGGGAGGTAACTTGG 58 42723457 42744116 TAGGTTTACGGGACCTCTC 58 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000016000 1 1 2 80 1 247133384 247133405 GTGACAGTTGAGAATCATGCTC 60 247133443 247137563 AGAATCTGGATTCTGTGGTAGG 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000016000 2 1 2 80 1 247133387 247133406 ACAGTTGAGAATCATGCTCC 58 247133447 247137566 AAGAGAATCTGGATTCTGTGG 58 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075125 2 1 5 80 15 10282327 10282345 CGAAGTGCTCCACTAGGTC 60 10281948 10282284 CCTGCTCCTTGTATACACCA 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 2 2 2 155 20 5804162 5805970 TTATCAACCTGGAGGACGG 59 5803646 5803667 TGTAGTAGATCCCATAGAGGGT 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000021703 3 1 2 80 17 53748468 53750211 TTTGGACAGGTAACAGAAAGAG 58 53750247 53750270 GATGTACTCCTTCTTGTTCTTCTC 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215 1 1 2 80 1 214040417 214048973 GGAGCCAGGTACATACAGAC 60 214040356 214040375 CTCAAAGAAGTGTTCCGCAG 60 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775 2 1 2 86 7 75410597 75410615 TTACTGGCATGCTGTTGGA 60 75410219 75410547 CTTCATCGACCTTTGAGCG 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467 1 1 4 91 X 53457116 53492174 ATGGAAACAAATCTGCAAGC 58 53492228 53492246 ATCATCTCAGGAGGAGACG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467 3 1 4 94 X 53457115 53492174 CATGGAAACAAATCTGCAAGC 59 53492229 53492248 GCATCATCTCAGGAGGAGAC 60 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000091532 1 1 2 80 9 14568128 14568842 TCCAGCAAGTTACAGTCCC 59 14568886 14568904 CTGTCTGAACGATCTGTGC 59 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 3 2 3 80 6 76685802 76700294 CGACAGCATTGTGAGAGTG 59 76700334 76700356 CTCAAGCCTTCTTATCTTCTCCT 60 NA Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 3 2 2 80 7 76229180 76229199 AGCATGTATGACCTGGATGG 60 76205501 76229139 GACCATCTTGTAGATTGCCTG 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 1 1 3 168 13 50559944 50559962 TGTTTCCAGTGCAATGTGC 60 50559142 50559160 GTAGCTTCACAGCATTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 3 2 3 92 4 150520267 150520286 TTTACGTAGGAGCTGTGGTG 60 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076 2 1 2 86 10 25842017 25847791 CATGGAACAGGAGGAAGTG 58 25841949 25841967 TCTTTGTAAACCGCTCTGC 59 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000047823 1 1 2 80 X 77535709 77535727 GTCACTTCCACTTCCACCA 60 77529703 77535669 GGATAGGTTTCAAGATGTTCCTG 59 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000043448 1 1 2 82 10 65016084 65016164 GCCCAGAATCAGCAAACTC 59 65013846 65013864 GATGGTATCGATGAGGGCA 59 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 2 2 2 80 15 52302680 52302702 GAAGATGATGACTCTGAAGAGGA 60 52301686 52302645 CAAGTTGGAAGTAACCTTACTGAG 60 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 3 2 2 80 15 52302680 52302701 AAGATGATGACTCTGAAGAGGA 59 52301685 52302643 CCAAGTTGGAAGTAACCTTACTG 59 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776 3 1 2 91 15 52295064 52295082 TTCCTTCCTATGGCAGGAC 59 52294173 52294853 TAGGGATAGATCTGGGCTCC 60 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755 3 1 2 80 8 66884312 66884331 AGTTTGATCCCATAAAGCCC 58 66881331 66882380 TAGATTGTGGGAGTACAGCC 59 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000037028 3 1 2 81 8 66870169 66870188 TGCCTCTAATGTGCAAACTG 59 66870083 66870130 CATGTACTTCTCACACTTAGACAC 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000079513 1 1 4 80 4 152461620 152461639 CTGTGCGAAGTTTAACTGTG 58 152458825 152461578 ACCATCTTCCTCAGAAATCG 57 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 1 2 2 80 8 114339238 114339257 TCCAGCTTCTTGGAATTGAG 58 114339300 114341201 TCTGATCCAGAATCCTGCT 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909 3 1 2 80 X 104767993 104768711 CTTTGTCAAGGGATACCTCCT 59 104767933 104767955 GGATTCAAGGTCTTCTTCATCAC 60 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002 2 1 2 80 9 60921464 60921483 AACTGGAAGCATCAATGCAG 59 60921522 60922006 CTGATTTATTAACCTGCTCCCTC 59 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000085439 1 1 2 80 1 219310118 219310243 GCACTATCTCCATATCTGTAAGG 58 219310060 219310080 AGAGTTTCAAATGGCTTCAGG 59 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000066691 2 1 2 80 1 219309826 219310232 ATATCTGTATCTCCTTCGCCG 59 219309766 219309787 CTTTCAAGTAACCAGGGAACAG 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 3 3 4 92 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342961 76342981 GTAGAATCACATCGACACCAG 59 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912 2 2 3 90 20 2205975 2206407 GACTTCGCCAACAAGTACC 59 2205903 2205922 TATCTGAGAATTCTCCCGCT 58 NA Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 2 2 2 80 10 10992247 10992916 AAGAAGGAGCTATTTAAGCTGG 58 10992188 10992207 CTTGTTGCGATCCATTTCCT 59 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 3 2 2 80 1 402125 403352 GGAGAAACATTGGTTCCCTC 59 403394 403413 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 1 2 2 85 17 55127086 55127105 GAACTGCAGTCAGAAGACAC 59 55127153 55128486 TTGGTTTCCCTCTCCAGTG 59 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167 1 1 2 80 1 101623340 101623359 AATCATCCGTTCCAAGTTCC 58 101624363 101624890 GGATCTGAATCAGAGGTGC 58 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 3 2 2 80 3 46513057 46513721 TCAAATTCACTGGAGTAATGGG 59 46512998 46513017 CTCTGGCTATCCATTCTTCC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 2 2 8 109 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709853 68709871 AACTCCATGAGGGTCACTG 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000004520 2 1 2 80 13 41713186 41713205 AGTCCTTCAATGTTCCAGG 57 41711836 41711855 CTACTTGTCTTGAGGTCCAG 57 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000004520 3 1 2 80 13 41713186 41713206 GAGTCCTTCAATGTTCCAGG 58 41711837 41711856 TACTTGTCTTGAGGTCCAGG 59 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000013851 1 1 2 80 1 157646321 157654754 CGACGATTCACTCAGTTACAG 59 157654795 157654814 GCTTCGGTAGTAACTTTGGG 59 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066 2 1 2 80 1 157649627 157649645 CAAGGAGCCACAATTGGAG 59 157649687 157654763 GTCCCAGATCTGTAACTTCAC 58 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 2 3 4 82 10 67622362 67622380 TTGTCTGGAGTATCTGGGC 59 67622424 67624294 CTCTTGTTACTGTGATGGCTG 59 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545 2 1 2 81 12 17581804 17583032 GATGATGTCCCTCAGGTCC 59 17581741 17581759 AGAAGGAGTATCGGTCACG 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000049357 1 1 3 80 18 56432042 56432158 GGGAGAAGAGTAGGACCAC 59 56434119 56434139 GACCCATGAGAACAATCTCAG 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000049357 3 1 3 81 18 56432043 56432159 GGAGAAGAGTAGGACCACC 59 56434121 56434141 CTGACCCATGAGAACAATCTC 59 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 3 2 2 80 8 97451878 97454729 TCACACTCAATGATGAGGC 58 97454773 97454791 CTTCAGTCACCTCAAAGGC 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667 1 1 4 80 15 36837474 36839657 CCTTTGTCAGCTGGTAAGAG 58 36839699 36839718 TATTTGGCAAGAGATGGTGG 58 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 1 1 1 79 3 2443628 2443648 CTTCAGACCTGATAACTTCGT 58 2443049 2443067 CTGCACCTTCTGTGTAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000026665 2 1 2 112 1 166781275 166781293 TACAGGTTCTCCTTGCTGC 60 166781368 166797001 TCGAGTGACTAGGACTTCCA 60 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846 3 1 2 83 1 166781360 166786251 CCATTCTTTGGAAGATGGGAG 59 166786296 166786314 CATCTCCTGAACTCCAGGG 59 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 2 1 1 67 16 2048046 2048064 CTTAACAGCGTCTTCCAGC 59 2036440 2036459 GGTGAAGCGTTCCTATACAC 59 NA DesignNoJunction Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050 3 1 2 97 14 35085622 35087229 ACAGCAAAGAGCAAATCCA 58 35085543 35085563 AAGAACCATCACAATGATCCC 58 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000003249 3 1 2 86 13 103284209 103287722 TACAACTACCAGGCAGGAC 59 103287771 103287790 TTTCAGCTGAAACCCAAAGG 59 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921 1 1 2 85 13 103285274 103287722 AATGAAGCAAAGGCAGGAC 59 103287771 103287789 TTCAGCTGAAACCCAAAGG 58 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759 1 1 2 111 10 65495514 65496568 AGGATGATGGTGAGGAGGA 59 65495421 65495439 TCATCCTCCTCTCCTTCCT 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000050535 1 1 3 80 11 71119621 71120913 CAAAGAGAACACGTCAATGG 57 71119560 71119578 GTACAGCTCCAGGATTGTC 58 NA Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 1 1 1 63 2 115363922 115363942 ACTCATCCAGTAGAAGATGGA 58 115364107 115364125 CCTTCTCCCGTAGAAACTG 57 NA DesignNoJunction Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076484 2 1 5 174 2 30664767 30666571 GTCAATCTGGTACACCAGG 58 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 1 2 2 80 4 78451463 78451482 AAGATTGTTGTGTCTGTGGC 59 78451046 78451422 TTCATCATTCAAGACCTGGGA 59 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809 3 1 3 164 X 75166721 75166827 GATGTAAATGTTGCAAGAGGAG 58 75164480 75164498 AGAAGTTCTGTGCTTCACC 58 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000068476 3 1 3 81 1 46920158 46923575 GTACAAAGCTGGCTTAATGGT 59 46923617 46923636 CAAGATGGAATATTGCCCGT 58 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951 1 1 4 80 2 78158677 78158696 GCAAATCATCAAGGACATGG 58 78164707 78247461 ATAACTTCCCAGCTTTCACTG 58 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000088297 1 1 2 81 19 44139467 44139807 GTGGAAGTCATTTCTTATCAGCC 60 44139408 44139426 AGATGAGCAGGATGCTGAC 60 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661 1 1 2 80 6 54549982 54550004 GTTAGAAGCAGTCAGAGATAAGG 59 54550042 54550420 GTGTTAATATCATCACCGGCT 58 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 1 2 2 142 15 89288649 89295926 GGTGTTGTCTACATCTACTGG 58 89288192 89288545 GAAGTTTCAGTGCCTCCTG 59 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030324 2 1 2 82 1 219375808 219375827 ACCCAACATCCTTTGATCCA 59 219375872 219379077 CTGGAAACACCTAGTCCCA 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 3 3 3 80 20 27213402 27213421 TGCAGTTTGCTTCAAAGGAG 59 27213461 27214016 AGATCTCAATATACCTGTGCCC 60 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 3 2 3 82 8 107522049 107525333 GGATAAACAGCAGTGTGGG 59 107525377 107525397 CTTTATAGGTTGGTGAGACGC 59 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 3 3 3 82 3 93926445 93926463 CTACTACAAGCTGGGACGG 60 93930933 93930951 TGTCACAGGAAGCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 1 2 4 81 5 78371220 78371239 AGACATGATGGATGGACGAG 59 78370613 78371176 GCTCATCACAGAGACCCTG 60 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491 2 1 2 101 4 117875120 117875139 CACCTGTAAAGTCCACACCT 60 117875203 117881973 TCTTGGCATCCTCTGAAGC 60 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170 3 1 2 81 8 47692672 47695437 TTCTCCCTGAAAGGCTATCC 59 47695481 47695499 TCTGCTTGCCAGATTTCCA 60 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135,ENSRNOT00000029340 3 2 3 80 2 177872895 177873561 ATGGAGAAGAGCTGGATTCC 59 177872834 177872855 GTATTTCTGCTTTCCCATCTGG 60 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115 2 1 2 80 19 28291652 28291686 GAGACATGGAAGAAGACAGC 58 28291591 28291609 TTGCCTGTTGAGGATTGTG 58 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 2 2 2 81 5 139816784 139816803 CAAGAAGACTTGTGATCCCT 57 139816847 139818614 GACGATCACCTGTAGAACC 57 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 3 2 2 80 4 87244864 87245962 CGAAGAAAGTTACTGCAGCT 59 87244803 87244821 AGGGAACTTCTCTTCCACG 59 NA Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 1 1 1 76 12 18518440 18518458 TAGGAATGCGTGTCATCGT 59 18518696 18518714 AGACTCCTCCTGGATCCTG 60 NA DesignNoJunction Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989 2 1 3 80 11 71027570 71029095 CAGAAGCTAGTAAAGGTCGC 59 71027509 71027527 GCTGTCTTGCTATGGAGTC 58 NA Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837 1 1 2 107 17 10507310 10510493 TAACTGGAACATGGAGGCTG 60 10507222 10507243 TCAGCTGTATTAACCTGTAGGG 59 NA Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 2 2 2 99 10 62025356 62025374 ACATCAGTGTCCCACAGTG 60 62023380 62025295 CCAAGATACACAACAGCTTCC 59 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000081280 3 1 2 80 10 31357540 31357814 CTTCTCACTTACCTGGTGGA 59 31357479 31357497 CGGATCTGAACCATCTGCT 60 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496,ENSRNOT00000083116 1 2 2 81 2 187367988 187368472 CGAAGACCTAAATGGAGAACTG 59 187367928 187367946 TTCCAGACAGTAGTCCCGA 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522 3 1 2 99 5 39618414 39618433 TTTCAGTTCTCAACCCACAG 58 39617044 39618352 GGAGGCCTTCTATCTCTGG 59 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 1 2 2 82 6 107621813 107621831 AGAAGCATTCTGCTGAGGG 60 107621876 107622952 TACTGGAGTACCATCCAGCT 60 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000060924 3 1 2 155 12 11223750 11226419 CTGGAAGTCTTCAAGGTGTG 59 11226537 11226555 GATGGTCTCTTCCTGGGAC 59 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455 2 1 2 95 1 78714765 78714784 CAATCTGGTGTCTGCTTCTG 59 78715821 78717461 TTCATCTCACAGTGAGGCTG 60 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 2 2 2 80 13 105045621 105047220 CTATTGCTTTAGGAATGTGCAG 58 105045562 105045582 CATTTCCATCCAAGATCCCTC 59 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 3 2 2 80 10 11886390 11886409 CTGTGGATACACAAGTTGCA 59 11885677 11886348 ATAAGAGGGAACCTATGCCG 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000048404 1 1 3 80 1 150505719 150609151 TTTCCAACATGACAGACATGG 59 150609191 150609211 TGAGGCAGTTAGTCTGATCTG 59 NA Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 2 2 2 80 1 80955066 80955957 GGCTCTCAGGAAGAAGGAG 59 80956001 80956019 GTTCCTCAGGACAAAGGGA 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000067610 3 1 6 111 5 48012082 48012235 GCAAGAAGAGGATGGAGGA 59 48012310 48012328 ATGCAAAGTGCTCACACTG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388 2 1 6 80 5 48011447 48011466 TCAGTAAAGCCGTAGATGAC 57 48011509 48011954 CCAACATCTGGTTTCCTCC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 2 7 8 61 20 1960450 1960468 CTTGCACCGAACCATTGAG 60 1959862 1959881 TGGAGACATCGATGTCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 2 1 1 60 11 71749974 71749994 CCTGATATCCTTGAAGGAAGC 58 71748525 71748543 TGTGTCTAGAGCTTGGAGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 3 1 1 61 11 71749984 71750003 AACCACAACCCTGATATCCT 59 71748533 71748551 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130 3 3 5 105 4 140463475 140464547 GAGAACTCCACAGAGGAGC 60 140470196 140470216 TTCCATAGTAACGGTTGACCA 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851 3 2 3 80 13 77031511 77031854 GTCAAAGGTCTATCAGGAGC 58 77031897 77031915 CCTGAAGCCAGAAGTTTGG 59 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000064252 1 1 2 80 8 115152511 115152994 CAGGGTCAACTTCCTAGCT 59 115153036 115153056 ATGCCACTTAATGATGGACTG 59 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 1 2 2 80 X 118455764 118456313 GATAGCAGATGAAGGAAGCC 58 118455703 118455721 GAGCAGACCAAATACTGCC 59 NA Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 2 2 2 84 10 104997968 104997988 GAACACCATTTCCCTATCACC 59 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000086495 2 1 3 91 11 70401368 70401388 GTTGGTATCGTGAGTTCCC 58 70399455 70399473 TATCAGGAAGTCAGAGCGG 59 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 2 2 2 203 2 84436730 84436748 CGATTCCTTCTACCCTCCG 59 84394086 84436563 ATAATAAGGCCAGTCCGGC 60 NA DesignRelaxed Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000013026 3 1 3 106 6 107283897 107283915 AGATCACCAGTGCCTTCAC 60 107280628 107283826 AGTCCCTAGAACCACAGGA 59 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175 2 1 2 80 8 114013464 114013484 ATGATCCCTGTACTGACATCC 59 114011255 114013421 ATTCTGAAGATCAGCCTGGA 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298 1 1 3 80 12 25523612 25526217 GTAATGCACAAGGAAGCCA 59 25523550 25523569 TCACTTTCTAACCTGCAGAC 58 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 2 3 3 80 5 169285362 169285380 ACGAAGGTCATCAGACCAC 59 169285423 169285524 GATGAGGAGGAAGGAACCAG 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 3 4 4 80 15 8895312 8898168 CTGCTGATGTCTTCAGATCG 59 8895251 8895269 AAAGGCCAACAGGAAACTG 59 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015 2 1 3 80 1 148928187 149079748 CCTAGGATTCTCCATTGCC 57 148928125 148928144 TTGGCTTCATTGAATGTGTC 57 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 1 2 2 80 7 143137696 143137715 TCAAGGCTCAGTACGATGAC 60 143137401 143137655 TTATTTCCTCACACTTGGTGC 59 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498 2 1 2 111 11 77474832 77474850 GAAGAGGAGTTTGTGCTGC 59 77465239 77474757 CTGCTTCCACCGTATTTCC 59 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264 3 1 2 92 X 70445759 70446422 AAGATTCAGGAAAGCCCTG 57 70446477 70446496 CCCAGGACTACCTCTTAGAG 58 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000083269 1 1 2 95 15 104027056 104101870 AGTAGAAGGTTACATCCAGGC 59 104101925 104101945 CACTTCATTCCAAAGAGTGCA 59 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000004716 1 1 2 81 13 92336072 92337522 TTCAAGCCAAACACTTCGA 58 92337567 92337585 TAGTTGAGTCCTCTCAGGC 58 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 2 2 2 90 17 31495006 31495776 CTTTGTGTTCGGTCAGAGTG 59 31495829 31495847 CACATCCAGGACAGAGTCC 60 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 1 1 1 116 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104884857 104884875 CGCTTTCCTCCTTTACCCA 60 NA DesignNoJunction Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920 2 1 4 107 12 5773028 5822310 CTGGAGTAACGCTTCTCCA 59 5772939 5772957 ACATTGATCGGCAACATGG 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079524 2 1 3 99 7 104741536 104741554 TTAACTGCACTCCGAGACC 59 104734580 104741474 TCTGAGAGTCACTGTTAGCC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000034969 1 1 4 82 4 15742476 15748957 TACAGGTATTTGGCCTTGG 57 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166 1 1 3 102 10 3321590 3342506 GATATCCACCAGGTATGAGCA 59 3356718 3356736 GGCCAGTACATCAGACCAG 60 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 1 2 2 80 6 66984471 67083531 TTTATCCAGGTACTACTGAGAGG 59 66984413 66984433 CTGCAATGAATCCATGAACTG 58 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 1 2 2 85 17 58292593 58292611 TACTGTCAACCTTCCTCGC 59 58280156 58292546 ACTGCTGGTACTCAGATTGTC 60 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435 2 1 2 89 7 27229245 27229654 CCCTCAAGGACAAGATCGA 59 27229174 27229192 CAGACCATCCATACTGGCT 59 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000079000 3 1 3 82 15 12578033 12578052 ATACCTGTCATCCTGTTGTG 57 12578097 12578672 GATGACTTCGTCCTTCCTG 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884 2 1 4 87 20 2501331 2503564 CCGGGAAGTTATAATGGCAG 59 2503613 2503632 TACCTGCAAGTTCTCCAGAG 59 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000001093 2 1 2 80 20 27756736 27756756 GTATCCTGAGAACATCGAAGC 59 27720969 27756694 TTCACCAACCAACTAGGCT 59 NA Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 1 2 2 80 16 6070155 6070176 TGGAAACAGATACATGGTTCTC 58 6069754 6070115 GTCCTCGTCAGTTTGTTCTC 59 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100 1 1 2 80 1 100319752 100319770 TACACAGTGGGCTCTTACG 59 100320224 100328073 CTTGATGATGTAATCACTCCCTG 59 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000089538 2 1 2 80 10 66760916 66762407 TCACCAATAGCACTTTGAAGC 59 66766224 66766248 GACAATATACAGCGTCAATCTTAGG 60 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 3 2 2 80 5 137672462 137672725 GGAAAGAAGGTGCAAACTG 57 137672769 137672787 CTGGTACTTCTTGATGGCA 57 NA Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 3 2 2 80 3 111831491 111831511 CTTCTACTGGTCCTCTGAACC 60 111831553 111831728 GAGACCTGCTCTTTGTCCA 59 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 1 1 2 72 15 2966166 2966186 GAGAAGTATCTGAGAAGCCAG 58 2813614 2813634 TGTACATCATGTTACTGTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000063900 1 1 2 135 6 108141693 108141711 ACTCCTGCCTTATACACCA 58 108144272 108145815 GACTGTATTTCCTGGCAGC 59 NA InUTR Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288 1 1 2 87 20 27954722 27979742 GAAGAGCTGAGCAACATGG 59 27979793 27979811 TCACGATCTTCTCAGCAGG 59 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000092075 3 1 2 85 20 27975786 27979745 GCGAAATTCAACATGGCCA 60 27979793 27979812 TTCACGATCTTCTCAGCAGG 60 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000075569 1 1 2 89 2 195678388 195678406 GAACAGGAGGACCTGACTC 59 195678315 195678335 CTTCTAGGGACTCGAGCAC 59 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481 1 1 2 80 7 117131459 117133509 CTCACCTTTGCAATCGATGG 60 117131398 117131420 TAGTAGATGGAACCCACATACAC 60 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481 2 1 2 81 7 117131459 117133509 CTCACCTTTGCAATCGATGG 60 117131397 117131420 ATAGTAGATGGAACCCACATACAC 60 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191 2 1 3 81 7 141327240 141327258 GTTCCGCTTTAGCCAAGTC 59 141327300 141327841 GATCTCATACCTGTTGTTGAGC 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 3 1 4 72 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71965794 71965813 ATGTCTATCAAACTGCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984 1 1 2 83 10 43885484 43891528 AAGACTTCCGACTTCTGGG 59 43885419 43885437 ACACTTGAGACCACTGGAG 59 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000090739 3 1 2 90 5 107733560 107747669 TTCATTGACAGGACATCCCT 59 107747722 107747740 GTTCAGCCATTGGGATGTG 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000038612 1 1 3 80 7 123139791 123139811 CAAGTCTCAGTTCACCATCAC 59 123139851 123140062 CTTAGGATCTGTGCATAGCCA 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 3 2 4 82 17 72247455 72356850 TCAAGAAGAGGAGGAAGAGG 58 72356895 72356913 CATCTTCTTCCAAGGGCAC 59 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 1 2 2 80 X 105178452 105178470 CTTCTCTTGTCGGTCACAG 58 105178511 105179103 AGAAGAAGTGGCTTTATCTCAG 58 NA Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000073435 2 1 2 86 11 82871166 82871184 CAACATGGAATCAGCAGGC 60 82871233 82871654 TCTGAGTCACTTTCTGACGT 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 2 2 4 87 20 3113951 3113969 AGGACCTACTTAGAGGGCC 60 3114019 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395 2 1 4 81 20 3120561 3120579 GCTCTTAACTGCTGAACCA 58 3120621 3121527 TTGGAGGATAATCTCAGAACAG 57 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719 1 2 3 122 4 33640506 33640525 TTTGGATTAATGGGCAAACG 57 33642924 33646242 GCTTCTTTCATAAGCCACAG 57 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265 2 1 2 97 6 110671811 110671829 GTCCAGGATCTGGTGACTC 59 110666923 110671752 AAAGAAAGCATCCAGTGTCTG 59 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 2 3 3 80 15 24161529 24164290 AACGCAAACAGTATCACTCTG 59 24164331 24164350 GTTGTTCTCATTGAAGCGGG 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310 3 2 3 84 3 146381294 146381312 GATTCTAGCAGCAAGTGGC 59 146380162 146381247 TATCATACTCCAACAAGCGC 58 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000064483 2 1 2 101 14 92485009 92485028 TCAGGGACAATATTGCTGGG 60 92478991 92484948 TGAGCATTTCTCTTCTGTTGTC 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669 3 1 2 81 2 226706305 226707588 GGAAAGAAGCCAAAGCCAC 60 226706242 226706261 GAAACTGGGACCCATTAGGA 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000010367 2 1 2 80 X 127804023 127804044 ATGAAAGTTGGTGGAAATCTGG 59 127804082 127819761 GTTTACAGGCGTTCTTAATGCT 60 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000077967,ENSRNOT00000089775 1 2 4 80 12 14713106 14713124 AATCTTCCAGTGCTTTGCC 59 14710976 14713063 GCAGGAGCAATATTGGTCAC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000031149 3 1 4 80 12 14613491 14613514 TTCCTGGGAGGTGTATAGGA 59 14613430 14613450 AGTCCTTGGATCTTGTACTCG 59 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 2 3 3 93 10 13321421 13323536 TCATTAAGGGCATCCAGCT 59 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000085188 2 1 2 80 13 100302925 100306369 CCTATGATTCATTACACAGACCC 59 100302867 100302885 AGTCAAGCCCTTCTGTCTG 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 1 3 4 80 18 6777410 6777429 GATGTTACTGGTTCCGTTGC 60 6776914 6777369 GGCTCCGGTATAATTGATTGC 60 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320 2 1 4 94 18 6770065 6770084 AAGACTTGATCCTGAAGCCC 60 6767982 6770009 TGGAAATGACTCTCCAGACG 60 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910,ENSRNOT00000083511 3 2 3 80 1 247257145 247257732 ACTATCAGATGGCAAACCG 58 247257772 247257794 CTGTGTAGATATAGATGTCAGGG 58 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159 3 1 3 107 20 3147443 3147645 TAAGAGCATGGACGACTTCC 60 3147714 3147733 TCTACACCATCAAAGGCGAG 60 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 1 2 2 80 19 44974641 44974659 GGTTTCTGCGCTTCATTCC 60 44974703 44988569 ATAGGCAACCTCCGAACAC 60 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 1 2 2 83 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762101 70762119 GATGATCAGGGAGATGCCT 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 2 3 3 80 8 72615741 72615764 GAGAAGAATAAGTGGTACATCCTC 59 72608740 72615705 GTGAGGACTTAGTAAAGTCTGG 58 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 3 1 1 102 3 9656843 9656861 GTGATCTGGATCCAGTGGG 60 9659021 9659039 TGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000061279 2 1 2 80 7 11003226 11003246 GTTCTCAGTCCTGGAAATCTG 59 11002828 11003184 TCTAGCTTAAGGCTGTGGT 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000088114 1 3 7 92 X 70637670 70641182 TACAGGAACAGGGAGTGAC 58 70642436 70642455 GTGTCACTGGCTCATATGAC 59 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554 3 1 2 95 3 94357825 94358061 TTTCACAGCAGACATGGTC 58 94357748 94357766 AAGTTAGTGTTGCAGCAGC 59 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000078657 2 1 2 87 1 220471312 220471331 CTAGGGCTATTGGTCTTCCC 59 220471509 220471529 ATTGAGGTCTTTCCGTGGG 60 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226 3 1 3 171 15 23667036 23667054 TTAAGGGCTGGAACGAGTG 60 23667187 23792839 CATTGGTTAATGATTCCCGGG 60 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 2 2 3 81 20 3297994 3298113 AGCACAATTTGGAGACATGG 59 3297932 3297951 TGTCGGATGTCCGTAATGAG 60 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 3 2 2 83 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 2 4 8 86 4 8223894 8223913 CAACATATTGACTGCATGGG 57 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 2 1 1 77 7 123088766 123088784 GAGCTTGATCTACACCGGT 59 123088705 123088724 CGATAGCTTCTCTTAAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940,ENSRNOT00000074087 2 2 6 149 17 77195783 77195803 TTATGTTGTTGGCTGTTGCT 59 77195914 77196912 ACTTCGATTCCCACACTCTC 60 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940 2 1 6 89 17 77195635 77195653 TTAAGTCACAGGCGTTCCA 59 77195706 77195726 ACTCGGATGCACATCAGAG 60 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283 3 2 3 97 1 215273121 215273142 CAAATACGGAATTGACAAGGAC 58 215272623 215273066 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669 2 1 3 89 1 215270232 215271665 AGTCCCAGCAAGACTATGC 60 215266467 215266486 CTTCTTCAAAGGTGGATGCG 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 3 2 2 80 6 115582512 115582530 TAACCTAGCACAGATGCAC 57 115581638 115582470 CACACGTTCTTAAACAACTCC 58 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000088558 1 1 2 80 1 7371243 7371263 ATGAGTATGTGGAAGTCACAG 58 7367967 7371203 GTTCAGCTGAAACTAATCTGG 57 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 3 2 3 85 2 196594325 196608508 GCTAACCCAGAAATGACATCAG 60 196608554 196608572 CCTCCACCTTGAATCCCAG 60 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325 3 1 2 182 12 22440512 22441242 CTTCACTTGTGACAGAGCC 59 22441388 22441515 AAGATGACACCGAAGAGGT 58 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000073757 1 1 2 80 12 22440486 22440506 TACATCCTGCTCTTCTTCCTC 59 22441261 22441284 CAAGCTGATGGAAGAAGCC 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 2 2 3 80 3 113311142 113311163 AAGATGTGATCCTAAATGAGCC 58 113310683 113311101 GAGGAAAGCCTTTGGAGTG 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285 3 1 3 80 3 113288317 113288335 AATCTTCAGGACTACGCCC 59 113287549 113288275 GACAAACAAGAGCTCATCTCG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000065774 1 1 4 128 2 92607379 92607397 TATGTCGACAGTAAGCTGC 57 92608728 92621443 TAAAGTTTGCCTGAGGCTC 58 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 1 2 2 80 8 117269290 117269675 CCTTCAAGACATTTCGTCCT 58 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000046798 2 1 5 86 20 3410698 3410717 AAGCCTTATACTACCTGCCC 59 3410630 3410649 AGAGGACCTATTTGCCCTG 59 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332 3 1 2 80 12 13138669 13138912 TGTATGCACATTGGAACCC 58 13133194 13133214 CATACTCTATGTCTCTGCCTC 57 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028 3 1 2 88 12 25497180 25498332 CCAACACTATGTGTACATGTTCC 60 25498379 25498398 GGAACTCGTAGATCTCGGTG 60 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000003872 3 1 4 95 X 70459607 70459625 CAAGATATCGAGCACAGCA 58 70459139 70459325 TTGGCGATGATAATTGTAGGG 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000088892 2 1 7 80 1 102915706 102929768 CAATCCCGATAAGGAACAGTG 59 102930387 102930406 TAGCCCTTCAGGTTAAGGAC 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000079440 1 1 7 146 1 102924363 102929683 ATTGTCACAAACCCAGTGC 59 102929793 102930389 GACCTCATAGCCACCATCC 60 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185 2 1 3 148 X 120916784 120917495 GAATTAAGCAATGATGCCACAC 59 120928701 120928719 TCAGCAAGATGCTTTGCTC 59 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 3 2 2 80 1 73262718 73264245 CCTATGTCTTGTGATCTGCCT 60 73252060 73252081 TTTGTTGCAGTGGATATGATGG 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 2 2 4 80 7 142036961 142036979 TTTGCCCTCATCCCTATCC 59 142035034 142036917 GATCCTCCAGCCTATTCCG 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000077962 2 1 3 89 1 260536549 260536567 CCAGTTGTAACCGGAACAC 59 260530954 260536496 AAGAAGAGGCTGTGTCCTC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324 1 1 2 80 6 111342127 111342145 TCATTGAGTCCAGAGCCAG 59 111339234 111342086 CATCTATCTCCTTCAAAGCCTC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 2 5 5 80 8 73059910 73059930 CATTATGTTTGCAACAGCTGG 59 73058135 73059870 GTCTTCAGAATGTTCTCCCTG 59 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000091828 2 1 4 107 5 141075461 141076135 AGTCTGCTCAGATTGCAGAG 60 141074527 141074546 CTACTTCAGCAGGGATCAGG 60 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025354 2 1 2 80 18 56078566 56078586 GTGGCTGTTGTTTGAAATGAG 59 56078624 56079533 CACTTGGTCAATACTTTAGGTGG 60 NA Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000077117 3 1 2 94 16 2724788 2725895 AGCAACAAGATGAAGAAAGCC 60 2725950 2725969 ATAGCAGAGGAAGACCTTGG 59 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000086571 3 1 2 84 14 21041841 21042205 TTCAGTGAAACGGAGTCCA 59 21042253 21042271 CTCCTAACTTGGATGGGCT 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000084742 1 1 5 122 9 43830673 43834251 CAAGACAACAGGGTGTCAC 59 43834337 43834355 TTCCTTAAGCTCAGCTCCA 58 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000067141 1 1 3 80 19 53642606 53642624 AGATGAAGACGGCTTCCTG 60 53642666 53643521 GCTGACATGTATGTAACAGCC 60 NA Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000002376 3 1 2 86 11 83892397 83892415 CAACATGGAATCAGCAGGC 60 83892463 83892885 TCTGAGTCACTTTCTGACGTC 60 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 3 2 2 81 16 2364355 2365877 CGTCTGTCCTTCAGATTTCAG 59 2364294 2364318 CAGTAGAGATGAGTATTAGCAACAC 59 NA Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 2 2 2 80 8 105362575 105406302 GCTGGACCAGATTTGTGAC 59 105362513 105362532 CCATCCATGTACAAGGTGAC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000084595 1 1 3 80 14 114540309 114540383 GGAGAATCAGATGGAAGAGGG 60 114540247 114540266 GAAGCTCCATGAACTTGGTC 59 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 3 2 2 106 17 76008900 76016081 GTTCTGAGGTCATGATGCT 57 76016151 76016169 AATATCACAGCTGGCAACC 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000079543 1 1 2 80 10 14527995 14528014 TCTTCATCAAGGACGTAGCC 60 14528057 14528170 CTTCCAATGAAGCCACAGC 60 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000090540 3 1 2 80 2 84522999 84523019 CATTGGATCCAGAATTCTCGG 59 84522077 84522959 CACTTCCTGAGATAATCGACG 58 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457 3 1 2 81 5 147257818 147257837 CTCAGACATTACGAGTTCGG 58 147257881 147259599 CACGGCTTGATGTCATCTG 59 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000075382 3 1 3 139 5 159072077 159074519 ACATCAACTTCAAGGGCCA 60 159071956 159071974 ATTGTCCTTGTCGTAGGCA 59 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000082332 2 1 2 100 10 8354317 8354338 CCAGTGTATGGCAATAAATTGC 59 8331948 8347954 AACTGATTTCTGTCACTGTAGG 58 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000082332 3 1 2 101 10 8347997 8354320 TTGCTACAGGGTGGTTACG 60 8331929 8331947 ATCTGTTGCAACGAAGACG 59 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 3 2 3 109 19 53609229 53612065 CTATGCCAAGCTGCTTCAC 59 53496024 53496044 CGATGATGAAGAGTCCATCCA 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000088123 2 1 2 111 1 69789168 69801088 CCAGGCCTCAAGGAATAGG 60 69801161 69804152 TCATGCAATACCACCAATGTG 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000014470 3 1 4 116 2 149313113 149314182 AAATGAAGATGGAGGAGCAC 58 149314259 149314279 GAAACTCAGAACCAAAGTCAC 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025291 3 1 10 82 9 95257456 95257475 CTGTCATGCCTAACATGGTC 59 95257516 95298739 GACATAGGCTTCAAATTCCTGAG 60 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000029757 2 1 2 106 15 48159466 48162441 ATATTCCAGAGGTAGATGCCC 59 48162509 48162527 CTCAATACAGGCCTCGGAG 60 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504 3 1 2 102 8 71016483 71016502 ACTGGCTTCAAGACTAACTC 57 71016564 71021701 GAACTGCAGCAAATGTATATCC 58 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 2 2 2 100 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780661 117780680 TCTTCTTGTCTCTGGAGCTC 59 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331 2 1 2 90 11 83986363 83986381 CTCGCTACACCTTGATGGT 60 83986435 83987944 ATCTCTGTGTATGCCACCC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 3 2 8 80 6 64838569 64838587 ATGCACAAACATCAGTGGG 59 64838630 64839963 GTGGAAGAATACCAGCTTCG 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689 3 1 2 82 3 100366247 100366266 CTTGGGTTTGAATTTGTGGC 59 100366308 100374999 ATGCAAATACTAGAAGTGACCG 59 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000042677 3 1 3 80 12 21061500 21061518 TCACAGGAACAACATGGGA 59 21017204 21061456 GTCCAATGCTTAGCTGTGG 59 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324 2 2 3 108 12 20966674 20966692 TATATGCTGTGGCCCACAC 60 20956240 20966602 AGGGAGTTCAGCTTCAAGG 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 1 2 5 80 1 15835979 15840753 CCCGTAGATCAGGATTTGC 58 15840795 15840815 CATTCTTCCAATAACACGGAC 57 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000000139 2 1 2 84 5 147866172 147867575 TATGGTGTCAGAGACCATGG 59 147866107 147866125 TTCCTCAGGGTTTAAGGCA 59 NA Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 1 1 1 86 6 126767171 126767189 AAACCAAGTCCTGACACCC 60 126768012 126768030 CTCATCACATACGCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 3 1 1 85 1 53562975 53562993 TTTGGGTGATGTGACTGCA 60 53562752 53562770 CATCCTCCATCCTCAAACG 58 NA DesignNoJunction Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 3 2 4 123 7 123637579 123637598 GATCAATGGACTGAAGGCAG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000082473 2 1 4 138 7 123634586 123634604 TTCCTCTTCTTCACCTGCC 59 123634058 123634486 GTTCTCTTGGTTTGAATGCAC 58 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120 3 1 2 80 1 91004420 91004440 CAATATGAAGCACATCGTGTC 58 91004480 91005273 ACCACAATGTCTTTCTTCCAG 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 3 2 7 89 2 186122531 186122551 AGCACTTTAATAATGCGCTCC 60 186117949 186119088 ATCTAGAGCCGTGTTCATGG 60 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000026587 2 1 2 80 1 199381341 199382255 TGCTTGCTGGAAAGATTCTG 59 199381280 199381299 GAGAGGGTTCTGTATCCAGC 60 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673 1 1 3 107 20 3344959 3346158 CCTATGTAGCTCAGGTTCCC 59 3346225 3346246 GGTATTTCCAAGGTTCGTTCTC 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 2 1 2 66 8 11997796 11997817 AGGAAATAGTTAACCTTGGTCC 58 12160149 12160167 AGAAATGAGCTGTCAGGGA 58 NA DesignNoJunction Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 1 2 2 80 10 47021731 47021750 GTGAAGCACTGGATTTCCTC 59 47021793 47025677 AGAGGCCACTCTTTGTAGG 59 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 1 1 1 95 4 100481918 100481936 TGCTTACCACAACAAACGA 58 100480789 100480807 AAACGTTGGTAGTCACTGG 58 NA DesignNoJunction Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000089073 2 1 2 80 1 248344613 248345938 CAGACTCGAGCCAAATATAGG 58 248344553 248344571 ACTGACATCTTTGCCACTG 58 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000089073 3 1 2 80 1 248344612 248345937 AGACTCGAGCCAAATATAGGG 59 248344552 248344571 CACTGACATCTTTGCCACTG 60 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000090355 1 1 2 117 3 119383802 119384553 GTTGCCAGTAGTTATCAGGGT 60 119379338 119383723 TGCAATCAACAGACCTGGA 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568 3 1 2 108 3 119384580 119384598 CATCATGGTGGAACTTGCT 58 119383813 119384331 TACTGGCAATTTCTCATGGG 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100 1 1 5 134 3 2264992 2266785 CTATGCAAGCGAACTTCCG 59 2267434 2267452 AGGTGTCGGCTTTCATAGG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000049681 1 1 2 99 1 140811664 140811682 CAGCAGAAACAGCCAAGTC 60 140811745 140821355 TCACATTGCTCCTGGTCTG 60 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 1 2 2 121 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667142 51667160 TCCTCTGTAGACTCCTCCT 58 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 2 2 2 80 12 22157213 22157864 CTCAAACCAGGTGATCATGC 59 22157905 22157925 ACACTGACAGAGTCATATCGG 59 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 2 2 2 80 19 38229222 38231895 GTAAGAAGGTCTCCCTCCTC 59 38231935 38231956 CATACCAGAAGTACAGGTTGTG 59 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 2 2 2 80 8 104152436 104152455 TGAAGTAGCTGATGAACTGG 57 104152496 104154705 TTCTTCTGATCATAAGCCGAG 58 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000091221 1 1 2 80 2 114423534 114423579 TGGCAGAGACCAAGATCAC 59 114423621 114423641 TGTCATATCCGAACTGGAAGG 60 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000081866 3 1 2 151 1 241021875 241021893 CTGTGAGCCCATAATGCTC 58 241010360 241013281 TCTTATTGTCACGAACCTCTC 58 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259 1 1 2 80 5 120459581 120461018 CTCTGTGTTGGCAAGATCAG 59 120461061 120461079 GCTCGCTTTCCTGATTCAC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 1 2 3 80 7 28741998 28742018 TTTGCAACCACTGGATATCCT 60 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892 3 1 2 80 17 76391275 76391293 TGACAGTGACCATCAATGG 58 76389530 76391231 TCACTTCCACAAACTCACC 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 3 2 4 81 1 200671086 200672158 GGTGAATGTCACAGATGCC 59 200671023 200671043 CCTGTTCTCACTGACAAAGTC 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000072538 1 1 2 80 15 106284796 106286087 ATGATATCACAGCTACAGCAG 58 106286129 106286147 TCTGTGTAAGGTACTCGGG 58 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 1 2 2 80 12 17501962 17501981 ACTGTGGGTCAAGGATATGG 59 17500914 17501922 AGGAAGTCAGTCTTAGCATCAG 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083 1 1 4 80 2 208569516 208569534 ATCAACAGGGAGAAGGCAC 60 208567485 208569474 CAGGGCAATGTTATTCCTCTG 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365 1 1 2 80 4 83527390 83527409 ATGATTCATAGGCACAAGCA 58 83527451 83540414 TGGAGTCTGATCTGATAGCA 58 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365 2 1 2 80 4 83527392 83527413 GATTCATAGGCACAAGCATGAG 60 83527451 83540416 GTTGGAGTCTGATCTGATAGCA 60 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 1 1 1 141 1 80141722 80141740 TGTTCTACTTGGGCATCCG 60 80158286 80158304 ATCTTGGTCCGCATTTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178 1 1 2 81 3 11831594 11831612 GTGAGCCTGAATGAGATGC 59 11825464 11831549 TGTGCGTGGATCCTATGAG 59 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000019577 2 1 2 83 19 42163243 42180312 AAGATGAGAACAAGAAGCAAGC 60 42163181 42163202 TGAGGTGATACTGCTTATTGGA 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 2 2 2 115 16 20888686 20888704 AAGAGGAACTGGATTCCCG 59 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309 1 1 2 80 X 1712943 1712964 GGAAAGAGGGTGTTCTTGAC 59 1712882 1712902 CATCTTCATGTCTTCATGCAC 58 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000056179 3 1 3 80 7 120860199 120863028 TTCCATAAATTTATGGCTGCCC 60 120860140 120860163 GGAGATCTTCTTACTTGAAAGGTC 59 NA Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 2 2 2 99 1 212539865 212539884 CTTTGCTATGGCACTTCTGG 59 212538619 212539804 GATCTTGTGCCGAAGTAGGA 60 NA Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 1 1 1 67 19 56306599 56306617 ATCCCAATACCAGCACCAG 60 56305946 56305964 GAGGAGACACTGCTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828 2 1 3 80 10 67491 68273 CTCCATCTCAGAACAGGACC 60 68316 68334 ACAGAGAAGGTCAACAGGG 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000050037 1 1 4 80 7 51431443 51432804 AGGATCTACTTACCATAGAAGTACC 59 51431387 51431406 GTAGGAGCACTGTCCTTCTC 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 1 3 3 80 10 109714943 109715076 ATTACAAGTTCCGGCTAGC 58 109715120 109715138 TCACAAAGGCAAAGACCAC 59 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054 1 1 2 88 15 29209017 29209035 CAGTGCAAGAGTCAGACTC 58 29209084 29209261 CGTTTCTCTAATGATTTCTCCC 57 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000058479 2 1 5 80 11 81426444 81426463 TGCTAACGTGTACATGAGAC 58 81424319 81426404 ATCATATGTGACATGTCTAGCG 58 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 1 2 2 80 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044949 78044968 CTCGATGAAGAAGTTGTCCT 57 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 2 2 3 80 18 72571541 72571562 AGGACGATTAGATGAGCTTGAG 60 72571603 72593008 GAGCAAGTGCTTGGTATGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 1 2 8 80 6 128061724 128061743 CTCTGAAGACGTTGAGAAGC 59 128061785 128062015 TTGTGCACCACTACAAACTG 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000055983 2 1 2 87 2 208399394 208400116 CACCATCAGAACAATCTCCA 58 208398766 208398784 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086 2 1 2 80 15 61879869 61879887 ACAGAATCCAGATGACGCA 59 61879927 61880488 GCAATACCATCACAGTATTTCCC 60 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 1 2 2 80 3 11265231 11265250 CCCATTCTCAAGAAGTCTCC 58 11265290 11267264 TTACAATGTCCAGTTTCCAGAG 58 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349 3 1 2 80 17 82083904 82083924 CGATAGCATTGACAGAGAACG 59 82083965 82085564 GCTTTCCGTAAATCCTCGTG 59 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000037974 2 1 3 80 9 73418546 73418566 AGAAACAGTTAATCTGCCACC 59 73418608 73437252 CCACTTGTTGCTTCTTCCA 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 3 3 9 81 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530 1 1 2 100 17 90701057 90701080 CAGATCTTACTTCTTTGACAACCC 60 90701139 90745596 TTCCACCATTGGACCTTCC 60 NA Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 1 1 1 60 3 165692608 165692626 GACCGCCACTTAAGAATCC 58 165685407 165685426 ATTTGTCACAGAACTCGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351 2 1 3 97 19 10171781 10171800 GAGGAAGAGGAGAAGGAGGA 60 10171860 10179133 TCTTTCGTGGCTGGTACTG 60 NA Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 3 2 2 80 2 197964209 197964229 GAGGTAGAAGAGGAACCAGAG 59 197963070 197964168 CTGTTTGATCTGGAGCTTCG 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 2 3 3 80 11 73699419 73699440 ATATTGACTCCCTTTGAACGGA 60 73699478 73711557 CTGGACCACAATATCACTTCTC 59 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 2 2 2 81 2 259381640 259382669 GAGACCTACTGCACGACAG 60 259381577 259381597 GATACTCGTTACACTCGTCCT 59 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000084737 2 1 2 120 5 159722308 159722326 TCCAAGCCGAACATCTCTG 60 159722825 159723928 CTTTGAACAGAGCGTTGGG 60 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000003638 1 1 2 82 18 312838 323147 ATTACAAGGCTCTGAGGGA 58 312774 312792 AATGGCCTTAATGGACTCC 57 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431 1 1 4 132 1 81144003 81144021 ATGGTGACCTTTAGGGACG 59 81124968 81143909 GTTGATACTCCACTGAGAGCA 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026252 2 1 4 98 1 81126080 81126098 CTAAGGAGGAGTTCAGGCT 58 81124968 81126019 GTTGATACTCCACTGAGAGC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000085708 3 1 2 81 6 23277651 23277673 GAGATGGAACGGATATGACTC 58 23276775 23276793 TTTACAGCTGTCTCAACGT 57 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000004078 3 1 2 87 13 50142078 50149548 CAGACTCAGATCAGAGTGGTC 60 50149597 50149615 TGAAGCTGTGGATGGAGAC 59 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 2 2 2 157 9 15114099 15114785 GGGCCAGTTTATCAAACACC 60 15116163 15116181 GTCGCATATGCAGATGTGC 60 NA InUTR Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000047158 3 1 2 184 3 120076237 120076781 CACAGGAAGCAATGAAGGC 60 120032294 120076089 ACTGTCACTGCTGTCTGAG 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000079942 1 1 4 82 1 250723429 250723447 GGACTTTCAAGCCTCTGAC 58 250712561 250723386 ATAATAGACCTGGTTTGCAGTG 59 NA InUTR Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076496 1 1 3 84 X 70566339 70566552 TCCTTGCTATTGCTCCTGG 60 70566600 70566618 CAAGTCACTGCACCTTGTG 59 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 1 2 2 80 1 64048837 64048998 CTGGAGAGGGTTACCTAGAG 58 64049041 64049059 ACAGATAGGTGATGGCCAG 59 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000090265 1 1 2 80 18 77401897 77401915 ACGCCTGGTGTACTTACTG 59 77384132 77394651 TTCTGAGTGAGCGTTCTCG 60 NA Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000081992 2 1 2 80 9 98636518 98637853 CATGAAGCAGCTTGGAAGG 59 98637897 98637915 GGTTCGTCATTTAGTCCCG 58 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 2 2 2 80 10 88466148 88467733 TGGATGAAGATCTCATCAAAGG 58 88467773 88467792 CCAGGTAGTTGATTCCAGTC 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033 3 1 3 80 6 28524558 28524579 GGAAAGTTAAACGATGTCAGCA 60 28524617 28530151 GTAGAATTCATTTCGGACAGCT 59 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 1 2 3 80 6 28518407 28518429 GCTACTGTGAGAAGAGATTTGTG 60 28518468 28521613 CTCTGACTTGGACCTTTGTG 59 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 2 2 2 80 8 72210892 72221729 GTTTGCTCCTTACGAGATTGTC 60 72210833 72210855 CTTATGGCACATATACAACTCCG 60 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000038973 3 1 2 80 7 98519115 98520746 TGGCTGTACTGAAGATTTACG 58 98520787 98520806 AGAGTTCAAAGGTCTTCACC 58 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000066377,ENSRNOT00000090576 1 2 3 118 3 21838990 21839008 AGAGGAACTCTGACAAGGG 58 21831767 21834223 TTGGGCAAACCATATGCAG 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000085126 2 1 2 84 15 3461707 3461725 TAATCAGCCGGTCAACCAG 60 3459795 3461661 GTCATTGCCCTTACTAGACCA 60 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 3 1 1 110 4 108301640 108301658 GCTGAATGGAGGTTGTCAC 59 108302007 108302025 CCGAGTAGCAGGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000087320 2 1 3 92 13 51034757 51035432 GGAAGGAGCCTCAGAATGG 60 51035487 51035506 AAGAACTTGTCTCCCAGAGC 60 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 2 2 2 80 3 120729877 120729896 GAGTTGTGACAAGTCAACAC 57 120729939 120749189 CTTATGGAAGCCATTGCAC 57 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558 2 1 2 83 6 93629245 93644564 ATGGCCTCAGGTAATATTTGTG 59 93644606 93644626 AGAATCACGTTGTAACTCCAG 58 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 2 2 3 86 11 82753129 82753147 TTCAATGGCTGTCAGTCTG 58 82749916 82753080 ATCTCCACTCTTCTGAAGGG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 2 2 3 84 1 87097352 87097371 TCACCAACCTAAACAATGCA 58 87096599 87097305 GTGTTCACGATGTCCTCAG 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467 3 1 2 81 15 4155177 4156890 ACAGTGAAGACTCAGGGAG 58 4156933 4156953 TGTTTGTAGGGATAGCTCTCC 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000009377 1 1 2 80 6 134984035 134984053 GCCATTGTCAAGGATGTGC 60 134984097 134984267 TTCCCGTATACTTGCCTGC 60 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 3 2 2 128 1 80650275 80655213 CTCAGAGTCATAGCCCAGC 60 80650165 80650183 TGAGATCCAGGTGATTCGG 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 3 1 4 60 2 118547219 118547238 TTCATCTTACAGACACGACG 58 118584885 118584906 CAAAGTTGTTTCCACACTTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 1 3 7 97 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34645366 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 2 3 7 98 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34645365 34668393 TTTGCGTTCCAACTTCAGG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 1 3 7 117 15 34646202 34647381 TCAACACTGAAGGAGGAGAG 59 34646104 34646122 AAACCACCACAGTAATGGC 58 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 1 3 4 84 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002981 2 1 3 85 14 34480765 34484605 AGTAGTCAGTTTCAGCTTTCAG 59 34484651 34484669 GCTTCTATCATGCGTGTCC 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 1 2 3 80 9 95135120 95135138 TCGTCTATACCATGGCACC 59 95132699 95135077 AAGAAGTCTTCCTGCCTCTC 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 1 2 3 96 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563952 82563970 AAGATAAGGACACAGGCGG 60 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 2 2 2 81 5 173384613 173384716 CAACACAAGGCTGTGTCTC 59 173384760 173384779 TGTTAGAATGGTGGAGACGG 60 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 3 3 3 80 4 156063904 156064913 AAGAACAGGACTTCATCACTG 58 156064954 156064973 ATTGTCGATGACCTGAATCC 58 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000002507 3 1 2 85 11 80800716 80802637 AACCTGATGGAGATTGAAATCC 59 80802683 80802701 TCCTGGGTCACTTTCTTCC 59 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000086335 1 1 2 82 18 6029721 6029739 CTTACCAAGGACCACCTCC 59 6026889 6029677 AATTAGGATACTGAGGCCCTG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 3 2 3 81 18 62852095 62852315 GCTATTGTGACAATCGTTTCAG 58 62852357 62852375 CTGACCGAAACTGGTTCTC 58 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 2 2 3 80 18 62929285 62930804 CACAGACCAGGACCTACTC 59 62930846 62930866 AAGTTCACTTTGTCCACTTGG 59 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 3 3 3 173 20 34656731 34683162 GGCTCGGACTATTCATCAG 58 34647150 34656594 GGAAGTTGAGTGGTCTTCC 58 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769 3 1 2 93 2 198829586 198829605 ACTACATGAGTACCCACCTG 59 198829821 198836316 ACGATGAACCTGACTCTCAG 59 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 1 2 2 80 4 153927664 153927683 TACCTGTTCAGCTCCTTCAC 60 153927725 153930277 AAAGTCCACGCAATGTTCTG 60 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77284303 77290477 ACTACTCCTACTGTAGCACC 58 77284242 77284260 TCTTTGGCTTGTCACTGAC 58 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000084420 2 1 2 89 20 34895145 34899855 GAGAAACGACTTGGAGTGGA 60 34899906 34899925 GGACCCACTAACACAGAGTC 60 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 3 2 2 80 8 119085454 119085472 TCTTTCTTGGTACAACCGG 57 119085515 119086674 CACCCTTGATGATCTACCTC 57 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031 1 1 2 82 5 59412868 59412886 CTTGAGCATCGAGTCAGAG 58 59412932 59413642 TATTGCAGGCCTCAATCTG 58 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 3 2 2 85 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939448 198942665 TGAATACATCCACCATGTTGGA 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 3 5 5 80 6 80226651 80228034 GAGGCTTCCGATCAATTCG 59 80228170 80228191 CTTCAATTAGTGCAGAAAGCTC 58 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 1 2 2 80 X 10404718 10405260 CCTAAGGAAATACAGATGCTGG 59 10404659 10404679 TGAAGTAGACCCAACTCTTCC 59 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810 3 1 2 98 16 47864673 47864692 CTTTCCAAAGCTCAGAAGCG 60 47858665 47861255 GCTTAACTGCTTCACGACG 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599 1 1 6 80 10 53846101 53846666 GAACTTACCTACCAGACCGA 59 53846706 53846727 CACCTTCGCCTGTAATTTATCC 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000085582,ENSRNOT00000004295 3 3 6 81 10 53721428 53749674 TCATCGAGAAGCCAATGGG 60 53749717 53749737 TTCTTGAAGGAGGTGTCTGTC 60 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 1 2 2 80 15 34496980 34497000 AGCTCATTATGAGACTGAGGG 59 34497042 34497656 TAGCCTAGGAGCTTGACCA 60 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 3 2 2 80 15 34496982 34497001 CTCATTATGAGACTGAGGGC 58 34497044 34497658 TGTAGCCTAGGAGCTTGAC 59 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000027789 2 1 2 90 15 34501007 34501025 GGAGCAGGAGAAATCCAGG 60 34501077 34501854 GATCTCACTCACTTCCTCCAG 60 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000089665 3 1 2 80 16 39994276 39995558 TCATCCAGAGTTCTGGATCC 59 39994215 39994233 TCCTCAGAGCAAGAAGACG 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420 1 1 2 80 1 261177909 261177929 CCGTGGTATCAGTAATGAGAG 58 261173955 261177868 TGCTAGAGACCTTACAGGTG 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008 3 1 7 117 1 83653843 83714394 TTTCAAAGGCTATGGCGTG 59 83714474 83714493 GATACGCTCCTCTACACCAC 60 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577 3 1 2 82 8 13572014 13572032 GAGTGCTCGTGATTTGGAC 59 13569773 13571969 ATATCTCCCACAGACTCTGC 59 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256 2 1 2 93 7 119826091 119826109 ATACAGCTGAGCTCAGCAG 60 119826164 119828039 TCCTTCAGTTTCTGGATGTCC 60 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 2 2 2 81 3 15052824 15056826 ATCAGCAGGTTGATGTCTG 58 15056870 15056889 TCTTCTGTTTGGAGTCTACG 57 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000023555 1 1 2 80 1 198000978 198000997 AAGCAGTTCAGATGACACCA 60 198001037 198001604 TACCCACAATAATCTCCAGCTC 60 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862 1 1 2 153 1 216725488 216728486 AAATTCCGAATTCACCTTAGCC 59 216721979 216722854 TTCCAATTCCTCCTCTTCACC 60 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737 3 1 3 83 5 59506498 59506517 TTCTACAAACAACCCTTCGC 59 59507732 59508707 TTCTGCTGCCTGTTCTAGG 59 NA Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 2 2 2 81 9 121712376 121712396 GGTCTACGGGATAATAATGCA 58 121710266 121712333 TTCTTCTGGTCTGATCCCA 58 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000018083 1 1 2 80 4 153909437 153910087 GCTCATTATGCTCCCACAG 58 153910131 153910149 AAGAGAAGACACATGCCAC 58 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000041577 1 1 2 80 8 22620636 22621131 CTGATTCCCTTAGGCTCCTC 59 22621173 22621192 GGTGAACTGGTTGTTGACTG 59 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 1 2 2 82 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121438 ATTCACACTCTGTCCCTTAGAG 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 3 2 2 81 19 10879353 10880944 GCTTAATCACGATCGCAGC 60 10879290 10879308 TTCTTATCCAGCTTCCGGC 60 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 2 2 2 80 4 123662976 123662994 TCTGCCTCCTCTTAGTCTG 58 123657789 123662932 TGAAGTAGACAACCTTGCC 57 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441 1 1 2 80 5 128723583 128730211 TTGCTAAAGACCAGAGTAATGC 59 128718827 128718848 GCTGGTATATTGCATCTACAGG 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000026719,ENSRNOT00000087595 1 2 5 80 9 97987453 97987473 TAGTGTCCTGTATACACTCCT 57 97981806 97987411 AGTCTTGTGCTGTGATGTC 58 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729 2 1 2 105 5 129081638 129081658 ATCAAACTCCTAGACTCTGCA 59 129082149 129082323 TTCTTGTGCAATCCCACTG 58 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406 2 1 2 198 1 209768794 209778398 AACCAAGTCACTCCTTGTG 58 209785783 209786478 CTGAGAATTCTTGAAGAACAGG 57 NA Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 1 2 2 80 14 37998532 37998550 AGTGCTGTAGACAAACGGA 59 37998590 38000509 GCAGGGTCTTTCTTATACTACTC 58 NA Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632 2 1 2 85 16 48732622 48732643 GTTCTGAACACTTAACCCACAG 60 48634956 48732576 CATGGTACCCTGAAGGTGG 60 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000048875 1 2 5 177 8 39455854 39460766 TGGACATTGTACTCTCCCTG 59 39437203 39437221 CATCATTGTCAGAGCTGGG 58 NA InUTR Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 3 2 3 85 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717829 164717849 CTCAGGGTGTAGATGATAGGG 59 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 1 2 2 80 2 238126460 238126478 GTGGATTTCTGCAGTGGTG 59 238124635 238126266 CTCTATTAATGTGACCTGGCAC 59 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 3 2 2 80 18 15667617 15670321 CTGAAGTTGGTTAAGGTTCTGG 59 15667558 15667578 GAACTCAGCTTTGTTCCTCAC 60 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487 2 1 2 81 1 123914240 123959929 CTATAACAGTGCTGATGAGCG 59 123914179 123914197 GAGATACTGGCAATGCCCA 60 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288 2 1 3 80 8 82037980 82038431 AGTTCCAGAGAACTAGAAAGCA 59 82039010 82039029 GAGCAACTCAGCTGATTTCC 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000064207 1 1 3 95 5 173483480 173484728 CTGAACAGCAGACACAGAG 58 173483403 173483421 TAAGGGCATCTTTGCATCC 58 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 3 1 1 60 X 124516612 124516630 ATCCACAAGTTCACCAACG 58 124515502 124515521 ACCATTGGTAATGAACTCGA 57 NA DesignNoJunction Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 3 2 2 80 11 70096538 70103142 AATGCGTACAGTAGCATCC 58 70096476 70096497 AGCAGTGAAGAAGAGATTAAGG 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036179 2 1 5 81 11 78250500 78256043 TCAGAAACATCTCCTTTCAGC 58 78250439 78250457 GAAGACGTCAGACTGTGTC 58 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781 3 1 2 91 19 983260 983550 GATGTGGGAACAGTGAGTG 58 983185 983204 TAATCCTTGGAGCAGAACAG 57 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000002683 1 1 2 88 11 37928024 37928043 AGCTCCCTTCAGAATGGAG 59 37923193 37923211 CGATCTGGATCTCTGCTGG 60 NA Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 1 1 1 137 7 12437430 12437448 ATGGAAGTTGGAGTCCAGC 60 12438828 12438846 TGAATGAAGTCAGCATGGG 58 NA DesignNoJunction Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 2 2 2 118 7 142459198 142459216 TCATGGACCTCTGCTTCTC 59 142459298 142461325 CATCTTCTCAGCCTCCTCC 59 NA Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 2 2 2 80 17 6766306 6766326 ACCTCAAGAAGAGACTGAAGG 59 6766368 6770643 CTCCAGCATCATGATGCTC 59 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 1 2 2 80 4 56722868 56722886 GCCCATTAAGCATACCGTC 59 56722929 56723180 CCTTCTCCTACATTCACCCT 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036168 3 1 8 81 1 226463304 226463324 CTACAAGAACTCCTTGGAGAC 58 226463367 226471445 GTCCTCGAAATTGATGGCT 58 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 1 2 2 82 6 93549992 93551765 GAAACCTGAAGAGGTTACCTG 58 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 3 2 2 84 6 93549994 93551767 GTGAAACCTGAAGAGGTTACC 59 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 3 2 2 81 2 199836097 199836116 CAAGGAGGTCTTCATCTCTG 57 199836157 199837442 GGCAACAAAGTCATTATGACTC 58 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000073341 3 1 2 88 4 156993329 156993347 ATCCTGAGGAGGATCTGCA 60 156992872 156993282 GAATTTCAGGAACTCAGAGTTAGC 60 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000086399 2 1 2 81 2 114342005 114342026 GTGAAACCAGAAGAATCCAGAG 59 114343929 114349255 CCGTCAGATCCTCATCTATAGC 60 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278 2 1 3 80 5 121953215 122019314 GTGGATATGCTTTGATGTGGA 59 122019356 122019374 AGTCCTGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000086835 1 1 3 80 2 200760290 200760312 AGACCATCCTAGATGTCAATCTG 60 200757649 200757670 AGTAGATGAAGGCCACACTG 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000085336 1 1 3 80 1 199609420 199609440 GAAGGTTGTCATCTTTACCCA 58 199609482 199609662 AAGTAGGAGCCGATCTGTG 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 2 2 2 80 10 107313685 107313703 ATGCACATGAATTCCTGCG 59 107312551 107313641 TCTGCCGATCCAACTTAGC 60 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450 3 1 2 85 10 107319234 107319258 ATTCAGTGCTTGACTTACACG 59 107314303 107314321 CAGAAGCTTCCTTGGTGAC 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000001373 2 1 2 99 12 37451361 37451381 CAGAACAAGCCCTTCTATGTG 59 37451436 37451723 CTGCCTTGTACTTAAACTTATCTGG 60 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 1 2 2 80 10 55925370 55925388 AGCTGATGTATGGGATGCT 59 55925429 55925790 ATAGAAAGCCATCCTTCATGTC 58 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000074197 2 1 2 80 6 146826566 146826680 CAACACAGACCAACACATCC 60 146826505 146826524 CCTACACTTTCTTGTCCTGC 59 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942 2 2 3 80 2 200793304 200794073 AATTACTGGCCCAGAAATGC 59 200794115 200794134 CAGGAGGTCTTAGACAGCTG 60 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006 3 1 2 85 1 87203127 87206386 TGGTATCACTGAGAACACCA 58 87202125 87202143 CAGAATCCTGCTTTCTGGG 58 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000077539 2 1 3 81 4 164439014 164439038 TTCAGGACCACATTATTGACAG 59 164438953 164438972 GTGTTGTCAATCCATGACCA 59 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 3 3 3 102 6 136151627 136151646 TTCTGTGGTCTGTGAATCAG 58 136153881 136153899 CTGGTGGAATTCTACCGTG 58 NA DesignNoJunction Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968 1 1 2 80 18 27422841 27422859 ACAGAACCATGGTCCATCC 59 27414129 27422800 AACTGATACCCAGTTCTGATCC 60 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 2 2 2 96 9 16610694 16611160 ATGGACCCAGAACATGTGG 60 16610616 16610635 CATCTGATATCTCCCGAGCC 60 NA Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 2 2 2 80 5 168021540 168021558 CCCTCCAAGTACCTACTCC 58 168021599 168023359 TTGAACCTGAAATAGCCTTGAC 59 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 1 2 2 81 1 105142217 105154152 TTATATCAGAGTGGATGGGCT 58 105154194 105154213 GCCAAGTATTTGCTCTTTGC 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076674 3 1 4 143 10 23664287 23664305 TACAGCAATGGTGAGGCTC 60 23664412 23664974 GTTCGGTCCTTATCCCTGG 60 NA InUTR Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 3 2 2 85 5 133872160 133875345 TGGAGATAACGGATGGTCC 59 133875394 133875412 ATTCACATTCTGCTGCCTC 58 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686 2 1 2 80 7 130014663 130014681 ACAACAAAGGAAAGGCACC 59 130014720 130016589 CTGAATTTCATCCATAGTCTCTGC 60 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000079824 2 1 3 102 6 103379372 103380869 ACTTTGACCGGAAGAAGAC 57 103378141 103378159 ATGATCCGGGCAAATTCTG 58 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 2 2 2 80 18 26576487 26577882 GAAGCATATCCAGAAGGAGCT 60 26576427 26576449 TCCACTTTAGTGTATGGGATCTC 60 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000059592 2 1 3 160 12 21756537 21756555 AAGTCTCCAGACCCATTCG 59 21749285 21749641 GACTTCACCAAGTCCATGG 58 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 1 2 2 80 9 16869176 16869194 CCGAGTTCCATCTCTTCCT 59 16869238 16871957 ACACCGACATGATCAACTG 58 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 2 2 2 80 2 203832412 203832430 AACAATACCTGGACGAGGC 60 203832474 203844311 CTGAAGCTTTGTCACTGGC 60 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153 2 1 2 85 13 60595515 60595534 ATGGCCATTGTATCTGACAG 58 60595582 60596664 GTATCCATGGGTTCCTCTG 57 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 2 2 2 95 9 16465604 16466088 CTCGATCTTATTGGAGACCCA 59 16466224 16466242 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 1 1 1 60 10 70303589 70303607 ACTGGACCTCTTGGATGAC 59 70304892 70304912 GAGATCATCTGAGGGAAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971 1 1 2 80 9 15642980 15642998 CAGGATGAAGTGGGTACCA 59 15640630 15642938 TCAGAAGTGGTTATCGTAGGT 58 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 1 1 2 101 6 139637322 139637340 CAGCTTGGGTTTCCTTGTC 59 139637129 139637147 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 3 2 2 80 16 6970404 6970424 ACATGTGGAACATTGTACTGG 59 6970464 6971657 TATCGATGCCATTCTTCTCAG 58 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000079201 2 1 2 85 12 39371178 39371196 CTCAGTGTCCCATCTTCCG 60 39369883 39371130 AAGTTTCAGCAGCTGAACTG 59 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 2 2 2 80 5 134726695 134726713 CCCTTTGTAGGTCACTGTG 58 134726757 134727340 TTCGAACAGCTTGTTCTGG 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 1 2 2 80 18 27097241 27097259 CATTGAAAGTGGAGGTGGG 59 27097300 27098771 TCTCTTAGGATTTGTCTGTGGT 59 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 2 3 3 80 X 71185499 71185518 CTTACTTGCCGAATTCTCCT 58 71185561 71185674 AACGGTAGGTTTGTTTCCA 57 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 1 2 2 80 6 135786703 135786722 GTTCTACATTGGCGAGATGG 59 135780459 135786662 TTGTCGGGTTTAATGTCTCTG 58 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 2 2 2 80 6 135786707 135786725 GAGGTTCTACATTGGCGAG 58 135780462 135786664 TCGGGTTTAATGTCTCTGTG 58 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311 2 1 2 88 17 15782621 15782641 CACATTCATCATAACAGGACG 57 15784432 15792216 TGGACTCGATCTGAATCCA 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000084099 3 1 18 81 1 43475840 43475858 ATGGCCCTCTACTCTATCG 58 43475900 43508258 ATCTATGGACCCTTACAATCAC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 9 18 60 1 43508749 43508767 TGGATCGAACTAACCACCA 58 43527519 43527537 AGTTAGGGCAATGGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 3 2 2 80 6 108657267 108657285 TTACTGTGAAGCTCGGTGG 60 108652566 108657225 TGGAAGGAACTACCATTCCAG 60 NA Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 3 2 2 131 17 10758835 10758853 ATGCACAGAAGAAGGAGGA 58 10758177 10758741 TCAGCCCATACTTATCTCGA 58 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 2 2 2 94 9 82597734 82597754 ACTCATGGACCAATCAGTGAG 60 82597810 82598553 GATTCCTCAGCCAGGAGAC 60 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 3 2 2 140 X 15449238 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451891 TAAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000071846 3 1 2 80 8 23372572 23372592 TCTGTGTCAGATAAAGTGGCT 59 23366858 23372531 TACTTCATGCACTGCTTCTG 58 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 2 2 2 80 2 250716324 250716705 GCAGACGAGGTAATCACTG 58 250716262 250716280 GCCCTTCTGATTTCCTCTC 58 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000086349 1 1 2 97 1 174438821 174440116 TATCTGACTGTGGAGGCCT 60 174438742 174438760 CACATCAGGCTGAAAGGTG 59 NA Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 2 2 2 80 6 133578596 133578615 AATGGACTCTGTGAAGAACC 58 133578657 133581250 AGCCCGAATATCTATTTCGC 58 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000090174 3 1 4 168 13 70243537 70245909 AAGAAGGACTATCTGTTCCAGG 59 70249705 70249723 GCACAAAGCCAAACAACAC 59 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088649 1 1 4 80 13 70229131 70229150 GCATCAACAGAGACAAGCAC 60 70229190 70240744 CGATGTTATACAACACCATGCT 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 3 1 2 83 7 54022216 54022234 ACTTGAGGGTGAAGAGGAG 58 54022279 54022528 GGAACACTAACCTGTGTACAC 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 2 1 2 80 7 53991191 53992648 ACTTCAGAGTCAGATGGAAGG 59 53992686 53992708 CATTGTACGCTTAAGAAGACCAG 60 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437 1 1 3 80 2 124145914 124145932 CTCTGTGGTTGGGAGAAGG 60 124141468 124145870 CATCAAATACGGCACCTGC 60 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000082102 1 1 2 80 4 168200561 168204140 CTGGACTGCTATCCAACTG 58 168200499 168200518 AATGGTGACAATTACTCCGA 57 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000082102 3 1 2 80 4 168200566 168204146 GATGAACTGGACTGCTATCC 58 168200505 168200525 GACAATTACTCCGATAACGGA 58 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 1 3 3 80 12 37686735 37688473 ATTGTAGTCAAGTGCCACC 58 37686673 37686691 ATCCACTTTCTCCTGGAGG 58 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 2 2 3 80 3 121835299 121835321 TGCTATAGGGAAACGGAGTC 59 121831731 121831749 AAGTGAGCCATAGCTTGCA 60 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 2 2 2 128 5 64673615 64673634 AGTCAGAATTCCACCCAAGG 60 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 1 2 2 86 8 85513345 85513366 GACATACAGCTACTAGAAGCCA 60 85513412 85514556 CTTAAATGCCTGCAGCAGAG 60 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000030327 2 1 2 93 1 28564278 28569647 GGCGATATGAGGTACTCCA 58 28572307 28572325 TTGTCTCAACCCTCTCCTC 58 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000030327 3 1 2 94 1 28564277 28569646 TGGCGATATGAGGTACTCC 58 28572307 28572325 TTGTCTCAACCCTCTCCTC 58 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027 3 1 2 84 8 22988822 22988842 CTTGGTTATGCTGGATACAGC 59 22988461 22988564 GATCTCCCACTCCTTCCTC 59 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734,ENSRNOT00000086756 1 2 2 80 1 16822407 16822428 TTGAAGATGATGACTTGTACGG 59 16823690 16827582 AGTAAATGAACTGAGCAGCTG 59 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643 3 1 2 80 4 11610443 11610465 CATAACCGTTGAGGACTTTATGG 60 11497518 11610408 CCGTAATAGTTGTCTTCATAGGTC 59 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 2 2 2 81 4 165427475 165427494 AACCTGTGGCTGTATATGTG 58 165427333 165427432 ATCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637 1 1 6 83 9 17350343 17351514 TTAAATCCTGGAGCGTTCAC 58 17351560 17351578 AACATTTACACGTCTGCGG 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027590 1 1 2 97 1 167246471 167246489 AAAGAAGCTGAAGACTGCC 58 167246390 167246410 CTTCTCTACCTGAGGTGGG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000044092 3 1 6 110 7 132099961 132099983 GTTCCATATGCTGAAAGAGAAGG 60 132095048 132098936 CTGCTGTCCTCTTCATCCC 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000080900 3 1 5 89 20 5416960 5417155 AAACACAGGTGGGAAAGGA 59 5417399 5417420 TCACCTTTACAATCTGGGAGAG 60 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 2 2 2 80 19 10756663 10756683 AGTACATTGAAGAGCAGTTGC 59 10756078 10756622 CTTTATGGTGCTGCAGTGTG 60 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 3 2 4 83 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532948 120532966 TTCTCATCCCTCATGGAGC 59 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 3 2 2 80 5 135021957 135024399 ATCTACTCATCTTTCTCTGTGG 57 135021898 135021916 CCTTCAGGAAAGATGTCCC 58 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 1 3 3 80 13 71134715 71134733 GCAAAGCTAGTCACCAAGG 59 71134775 71136853 GAAATCGATATTCACCTCCCG 59 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000006408 2 1 2 80 3 122141380 122141398 CAAGGGCTCAACTTCTTCC 59 122148170 122150144 TCATTTGTGTCCTGGATCTG 58 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254 2 1 2 81 8 19887179 19887200 GAGTTTGAGTTTGTTTGCTTGC 60 19887240 19887769 TTGAAATGTCACGAACTCCTG 59 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 3 3 3 80 10 54229067 54229085 GCTGGAGATCAAGTTGAGC 59 54229129 54233072 AGATCATCTCCTGCCTGAG 58 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820 1 1 3 89 10 54126696 54156667 AGGACTAAGAAGCCTGGGA 60 54156720 54156738 AGACAAGTAGCTGTGCCAG 60 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820 3 1 3 90 10 54126695 54156666 CAGGACTAAGAAGCCTGGG 60 54156720 54156738 AGACAAGTAGCTGTGCCAG 60 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824 1 1 3 80 6 76539699 76539721 AGAAGGATCTACAGCTTGATGAG 60 76537117 76539665 CAGAAGGAAATTCACTGATTAGGTC 60 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126 2 1 2 80 2 263940373 263940392 GAACCAGATCTTGGATCCCT 59 263940434 263978822 AGGTTGTTCATCATCTGGCA 60 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 2 2 2 80 9 10998333 10998354 AATATCCATTTGCATCCAGAGG 59 10998395 10999108 GCAGTTGATTCGTTCCTGG 59 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000034283 3 1 2 104 16 8578294 8578312 CGAGCCTTGTTGACATGAG 59 8578206 8578226 AAGATTGCTTGGCTTGTGG 59 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 1 2 2 80 7 122131639 122134433 ACTCCACAGATTGATGGGT 58 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 2 2 2 80 11 17119499 17119517 ACTGGGAACAGACAAAGAC 57 17080149 17119458 AGATTAGACTTTGGTACTCCCT 58 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000042072 2 1 2 88 1 25787655 25839187 CACAGCTGAAGGAAATGCA 59 25787585 25787603 TCTTCAGCACCTTTCCAGG 60 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000042735 1 1 2 83 6 972261 972280 TGGAAGGGATCTCAAATGTC 57 970089 972218 CTGTCGTCAAATACTGTTTCTC 58 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000088469 2 1 2 80 14 78685198 78685221 TCTTCTCCAAGATCATCTCCTC 59 78685138 78685156 GGAGGTAATCCCTCGTGAG 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000091460 3 1 3 80 12 41361455 41361473 AAGAAGCAAAGGAGTGGCT 60 41361515 41363036 GTACTACTGGTACTTTCGGCT 59 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000046370 1 1 2 80 11 4327123 4397196 GATGACAAGAAAGCTTTGAGG 58 4327063 4327081 GTCACTGACACTGATGCTC 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 3 2 3 84 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360434 135365155 AAATTTGCTTCCTGATCCTCAG 59 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 2 2 3 88 4 58839568 58875537 CCCAGGATAATGGAAATAAGACTG 59 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 3 2 3 90 4 58839570 58875539 CTCCCAGGATAATGGAAATAAGAC 59 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 1 2 2 81 4 169161729 169175827 TACTCCAGAATTCTCTACTCAGG 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889 1 1 2 80 11 17558947 17558967 CTAGTCCGAACCAGTCTACAC 60 17559006 17559247 CATGAAGTTTGGGTGTATCCTC 59 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449 2 1 2 101 8 87205384 87211884 CTCAGTCACCAGGGATCTC 59 87211944 87211967 TGGTTATGTCTCTGGTATTCAGAG 60 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203 2 1 2 97 X 156437507 156437610 CTGAGGAAGAGGCTCTTCG 60 156437670 156437689 TAGAGTGGACAAACAGTGGG 59 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078219 1 1 5 84 4 164687332 164688187 AGATGAATTCTCCAAATGTCCC 59 164687269 164687287 ATTGCAACAGCAACCAGTC 59 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 1 1 2 81 4 39519630 39519653 TGGAGTTTACTGGAAGAGATAGTG 60 39519693 39521302 GTGACCAGGATGTTCTCCC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 2 2 6 80 12 41258883 41262143 CTGGTACCAACTGTGTAAGGA 60 41258823 41258841 CAGGCATAGATCGTGAGCA 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 2 3 6 83 12 41302510 41302528 CAGAGGAACTTCCTGAAGC 58 41300159 41302464 CTCCTTACACAGTTGGTACC 58 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 1 2 2 80 11 15487939 15487957 ATGTTGATCCATCCAGAGC 57 15488001 15491092 ACTCACTCACATCTTGCTG 58 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 3 2 2 80 11 15487941 15487959 GTTGATCCATCCAGAGCAG 58 15488001 15491094 AAACTCACTCACATCTTGCTG 59 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649 3 1 2 81 6 147933884 147933903 CAGCTATGAGCAAAGGAGGA 60 147933946 147937497 TGTCACTTCTTTCTCAGCCA 59 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755 2 1 2 82 6 98437628 98437646 AACACAAACAGTTCCTGGT 57 98435714 98437582 CCTAATAACCTGGGCATGG 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500 2 1 7 80 19 15189758 15334675 AACTTTGCTAGGAATAGGAACC 58 15334714 15334734 CTGCAAATACCCTTCCTTCTG 59 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 2 2 2 80 1 219124078 219124580 GCTTGAAGTCAACAGATTTGC 59 219124622 219124640 ATGGATGAGATCTTGGCCT 58 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721 3 1 2 87 7 70556570 70556588 GTATGAGGAGCAAGCACAC 59 70538437 70556520 AAGACATATGGCTTTCCCAG 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 3 3 4 81 8 124844302 124884184 TGTGTCAGTATATGACCGC 57 124844239 124844257 ATAGAAACAGCTGTCGGAG 57 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 3 2 2 81 8 56198608 56198626 AGCAGAAAGGAGGAGAAGC 59 56198671 56224738 AGAATGGCTGTCTCTGGTG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 2 2 6 80 1 41928752 41928771 GACCTTAAACAGCAACTGCT 59 41928246 41928709 ATCCGCTCTTGCATATTGC 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000079371 1 1 3 80 5 136049257 136049275 TGACATTGACGATGTGGCT 60 136049190 136049213 TCTCCTGCAGTACTGTCCT 60 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 3 2 2 81 3 119064055 119064073 CTACAGCAGACCTTCAGTG 58 119061243 119064010 TCTGCCAATGCATGAAGTC 59 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 3 3 3 83 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942058 144943888 GCCATTCTCCATGGAAACTG 59 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 1 1 1 60 5 38922731 38922750 TTCTTGGGTGAAATTTGGGC 59 38922667 38922690 CAAGGATTAATTCATCCTTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403 3 1 2 107 13 84064197 84064215 TCTACGGAGTCATCGTCAC 59 84065448 84066440 GGTTGAGCTCGTTATAGAGC 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000082410 1 1 6 98 20 4612053 4612222 TAACCACCAAGGTAGCACG 60 4612284 4612302 TCTACGTCGTTCACCACAG 60 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853 1 1 3 88 3 128914903 128919217 GAGGAAATAGAAAGCGCAGC 60 128919268 128919286 TGACTGAAGTCATCGGCAG 60 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000049855,ENSRNOT00000045393 3 2 3 81 3 128914910 128919227 TAGAAAGCGCTGATCAAGAG 58 128919271 128919289 TTGTGACTGAAGTCATCGG 58 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 1 2 2 80 7 134619426 134619445 ATTGCCGAGTATGTAACGAG 58 134619487 134624161 AGCCAAATTCATCTCCTCTG 58 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 3 2 3 92 7 14541375 14544179 AGATTGAATGGGACGACCTG 60 14544234 14544252 GGGAGATGACTGTGACTGG 60 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 2 2 2 80 19 14552813 14553124 TTGATGAGTTCGACAAGATGC 59 14553166 14553184 TGGCAATGGAGATGGTCTG 60 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 2 2 2 81 13 74513361 74513379 TTACGCCAGAAGAATACGC 58 74492351 74512354 CTTGAAAGTTCATCTGGCTG 57 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382 2 1 2 137 8 76413354 76413373 TTGTTCCCATGGAGTACGTC 60 76416991 76426298 GCATTGATGTCTGCTCACTC 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000082008 2 1 3 80 3 14637213 14637983 GCTGGTTTAACAATGGGACC 60 14637152 14637170 TGCTGTCTCCATTTCTCCC 59 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792 2 1 2 82 7 13019976 13019994 GAAGAGTGGGACCCTATGC 60 13020040 13021105 GGGTGTTTAAGCTTTGCCA 59 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 2 2 2 80 3 72016570 72016591 ACCTAATGAAGACTGTAAGCCA 59 72015402 72016531 CTTACATTTCTAAGGCAGCCA 58 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 3 2 2 80 3 72016570 72016591 ACCTAATGAAGACTGTAAGCCA 59 72015402 72016532 CTTACATTTCTAAGGCAGCCAG 60 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 2 1 1 79 5 58416567 58416585 CTTGTAGGATGGCAACAGC 59 58416965 58416984 TGGTAAAGAAGTTGTAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000090114 2 1 2 90 8 58144779 58144968 TCCTGGAGAAGATGCAGAG 59 58145020 58145040 GGCAGGAGATTTAGAAGACAG 58 NA Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707 3 1 2 81 1 128614254 128621062 TAGCTCCAAAGGACAATGCA 60 128621105 128621124 GCAATGACTTCATCCAGGTG 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367 1 1 6 80 13 84474333 84474356 TCTGGATCTGAATGGGAAGG 59 84474399 84490604 TCAACCATGGCTGTTAACC 58 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000061871 1 1 2 80 6 7965020 7965661 GATCTCACCTACCAGGGTG 59 7965704 7965723 AGATTCAGATAGGCCGAGTG 59 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623 2 1 2 85 19 60351881 60351899 CCTCTACAGTGGGATCGAG 59 60351948 60358397 GGCATTTACCTGACTCACC 58 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623 3 1 2 86 19 60351882 60351900 CTCTACAGTGGGATCGAGG 59 60351949 60358399 CTGGCATTTACCTGACTCAC 59 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000082564 3 1 3 97 1 135800004 135800023 CTTCATCCTCTACACCACCA 59 135791505 135799944 GATACTCTGTGCTGGTGCT 60 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 2 2 2 81 14 1465792 1465810 ATGACGGAACAGGATTTCC 58 1466073 1466263 CTGCGATAACCACCTTCTG 58 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 3 3 3 80 1 87004747 87005048 GATGAATGTCTGTGTCTCCA 57 87005090 87005109 TTGTAACTGCAAGATCCGTC 58 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000066244 3 1 2 121 7 117667101 117667201 CTCTCCGAAGAGAACAGCC 60 117666921 117666939 TCAAAGGTTGTCACCACCT 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 3 3 3 80 19 21479335 21481581 GAAGCTCCAGATCTTAGATGCT 60 21479276 21479296 CCTTCAATCTGTCTGACAAGC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 1 2 3 80 14 72335551 72335569 GTTCTCAGCCTTTGGATCC 58 72333614 72335507 TCATAGCAAGTTCCACAGC 58 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000084470 3 1 2 95 9 40984987 40985005 CCCTCCAGGTTACATTCCA 59 40985367 40985390 GAATGTGATCACTGCTGGG 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928 3 1 2 83 9 40972108 40972127 TAGTGAGGAGCTTCTTGGAG 59 40972171 40975097 CCTTAATGTCGCTGAACTCAC 59 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000058068 2 1 3 80 14 81948655 81951871 ATTCTGGAATATAGACAGGGCT 59 81951912 81951930 ATGCTTGGCTGAAAGTCTC 58 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000052017 2 1 3 91 4 150797188 150797206 CCAACTTCGACAACTTCGC 60 150788365 150797134 ATCATTGACCCAGTACAGCA 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975 3 1 2 81 4 70965717 70967967 GAAGAAAGAGGCTCGTCAG 58 70965654 70965674 GGGTTGTCCATATTTCTTCCA 58 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187 3 1 2 80 19 22061653 22065530 CATGGGAAACAGGTAACCC 58 22061591 22061614 CTTAATCACTCTTGGAGATAGTGG 59 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681 2 1 2 96 9 113313481 113331024 ACCTCAAATTCAAAGGCCC 58 113313403 113313423 GTGGTCTTCACTTTGAAACAC 58 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000082892 2 1 3 80 8 128225404 128229021 TTATTCCAGGCCTGAAGACC 60 128225343 128225361 AGACAGTGAGGACCATCAC 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769 1 1 2 80 11 31836193 31836213 CCACCTGAATTTCTCTTGGTC 59 31836253 31836675 GCTTCCATTTCTCAATACCCT 58 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000006117 3 1 2 80 13 85858089 85858108 AGGATTCTAGAAGCTGAGCT 58 85858151 85858271 GTCATTTGTCGAGCTCTCC 58 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 3 2 2 80 8 29714511 29853598 TCATAGTGCAAGTTCCTCCC 60 29853641 29853659 ATAACAGGGTCACACTGCT 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657 3 1 2 146 2 210868868 210873850 CTCTGAAGCTCGAAGTGGT 59 210868501 210868758 CTGAACAACTCCTCAGCGA 60 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929 1 1 2 156 14 82787877 82787895 AACAAGGACCACCTGACAG 60 82788438 82788536 AGGCTTGACAGTCTTCCAC 60 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607 1 1 2 80 8 55453424 55458297 CAAATATTCTGACGGTGAAGC 58 55453364 55453384 CGTTCTTTGGTGTCTATTTCC 57 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 3 2 2 81 12 40624379 40624397 GAGTTTAAGCGTCTGGCTG 59 40624440 40625102 TGTCACCATAGTCTGAGATCC 59 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000021740 2 1 2 101 3 120696924 120696942 GTATGGAACGAAGCTGCTG 59 120697007 120723885 AAATTCAGCAACTGAGCCC 59 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 3 2 2 88 12 44968644 44968662 ATGGACACATTCACAGGGT 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 2 2 2 89 7 2824136 2824307 AGATTGGAGAATTCTGCATGG 59 2824067 2824085 ATTTGTTGGATGCCTGCTG 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888 2 1 2 80 19 19313715 19314867 GAGTAGAATTACTGGAAGAAGGTC 59 19313658 19313676 CATCACACTGGAAGAGCTG 58 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401 2 1 2 80 7 59065908 59065926 CATCTGGTCAAGACCTCGA 59 59065966 59215419 CTATATCCATTTGCAGTGTCACC 60 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 3 2 3 80 1 169455730 169455748 TTGTGAGCGATCTCAGGAG 59 169454326 169455688 TGCAGCTTCTCCTTATACTCC 59 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 2 3 3 80 8 22427972 22427991 TGTCCTTGACCATCCATCTG 60 22428033 22429336 TGACTGATAGCGTTTCTCCA 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 3 3 3 80 7 61183069 61184372 CAGAGAAGAAGGCAGACGA 59 61184415 61184434 CAGGCTTCTTTATAGGCTGG 58 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000023286 3 1 2 85 2 29655168 29655186 CCTTTGAAGTGCCATCCAC 59 29655234 29659727 TTCTTCCCATGTGAGGTCTG 60 NA Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 1 2 2 78 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726050 139726068 TCTCTGCTGCATAGTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043 2 1 2 80 5 73942307 73942327 CCTTCGTTCATGAGAACATCG 60 73937559 73941034 ACTCCAGGATCTTCATCTTCC 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000090143 2 1 4 147 1 201256994 201281635 ATGAGTTCCGACTCTGAGG 59 201281744 201293319 AAATGCATCCTGGTTCTTCTG 59 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000084012 3 1 2 90 7 70372195 70372213 AACAACAGTCAAAGTCCCA 57 70372267 70372286 TCATATCCTGACCAACCCA 58 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 2 2 2 88 1 219441018 219441543 CTATGATGAATGCAAGAGACGA 59 219441592 219441610 CTACAATGGCTGCAATGGG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 1 3 3 80 8 78379470 78385826 CCTTGGCATCTATTTATTCTCCTG 60 78379413 78379433 GTGAAGGAGATCCTACTGGTG 60 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 1 1 1 60 3 137632367 137632389 GGTTTAAGTGAAGATGGCTACAC 60 137632326 137632346 TTTCCCATTTGGATTCTCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000090426 2 1 2 80 3 57883707 57883725 CAGTTTGGTGTCACTCTGG 58 57883643 57883663 AGTAGCTGTACTTACGCCT 58 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000017900 2 1 2 93 8 59457133 59458555 CCAAGTGCAGGATACACCT 59 59458612 59458630 TGGTGCCTCCAAGTTTAGG 60 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000082469 1 1 2 80 13 90576950 90576970 CTGTTTGATAGTCACATGCTG 57 90577009 90591709 GTTTGTCATAACAGAGATCCGA 58 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000022074 1 1 2 122 8 49713238 49715433 TGTCAGCTAACCATGGTGG 60 49715805 49715823 GAATGAGGAGTCCCACGAC 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000080557 3 1 4 81 12 48143218 48143237 GACTACACCCAGATCAGCTC 60 48141390 48143177 CATCAACGATCATACCTGACTC 59 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000025443 1 1 2 121 3 22413278 22500682 GCTTTCAGATCCTGAGGTG 58 22381223 22381242 CAACTTGGCTAACTGAGAGG 58 NA Rattus norvegicus 81 Ccdc162 ENSRNOG00000037668 ENSRNOT00000000340 3 1 1 80 20 46280236 46283862 CTGAAGCAGATGAGAAACCG 59 46280175 46280194 ATTCAGTAGCTCCTGCACTC 60 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 1 3 3 83 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 3 2 2 80 8 59298350 59299800 CACTTTGTTTCCAGTTCATCC 58 59298290 59298311 GTCAAAGAAGGTGTGAATACAG 57 NA Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 2 2 2 80 X 20227474 20227684 TGGAAGAAATGGAGGTGAC 57 20227412 20227431 CTGGATCAGAAGGTTGAGAC 58 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029,ENSRNOT00000076929 2 2 2 129 10 88336517 88336535 GATCGAAGGTCTGGACAGG 60 88336833 88336852 AAATAACAGCACAGCACTGC 60 NA DesignNoJunction Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000090673 1 1 2 91 7 14363847 14364172 GGTTTAGGCTTTGTCCAAGG 59 14357849 14363798 GTTCCATATCCATAATCACAGGTG 60 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000042077 2 1 2 89 19 21554211 21554229 GAAATTCCAGAGGACCCGT 59 21554282 21556889 AGTACATTGAGTACCGGCC 59 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000042077 3 1 2 89 19 21554212 21554230 AAATTCCAGAGGACCCGTG 60 21554282 21556890 TAGTACATTGAGTACCGGCC 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016596 2 1 2 80 2 34257859 34257880 GAAATATTAGCCCATGGACCTG 59 34257917 34258833 CTCCAGAACTGAAAGATAGTGAG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000009920 3 1 2 86 3 48814738 48814758 TAGAAGGGTTCAATGTCCACC 60 48801442 48810136 TGAAAGGTCCTTTGACATTTCG 60 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172 2 1 2 155 8 128577142 128585819 TGCAGGTTTCCTATGTAATTCG 59 128585935 128587751 ATGGATCTTGCTTGTGCTG 59 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425 1 1 2 85 1 219136777 219137081 TTAGAGACCTCAACGAATCGG 60 219136712 219136730 GAAGGTCTTCTCCAGCTCC 60 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000076541 1 1 3 80 20 49484681 49484811 CTCAACTGTACAAGCTGCC 59 49484619 49484638 TTCATGATCCCAGACGTCTC 59 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 2 2 2 81 8 128661864 128662077 TTAAATGCCAGATGGATCACAC 59 128661804 128661822 AATTCCACTCGACCATGGG 60 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619 2 1 2 88 7 2556529 2556548 AGTGACTCAGACATCTCCTG 59 2555896 2556478 TCAGAACTGAGCCTGAAGG 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000011978 2 1 3 151 3 159902588 159941150 CGAGTCCTTATGACACATCC 58 159941264 159941282 CCTGAAGAATCCCTTGCAG 58 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 3 4 5 83 10 89175110 89175129 TCAACAACGTCAAGCTACAG 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 2 2 2 80 3 35791328 35791349 AACTGAACATGACATGACTGTC 59 35784858 35791290 GCACCATTAATGAACTTCTCCA 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866 3 1 2 145 9 45546508 45556983 GACAGGAAGGATCATCGGA 59 45538299 45546399 CACTATACCCATCCGGGTC 59 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 1 2 2 80 14 7628487 7628505 TCTGCCTCTACGTCTACAC 58 7628546 7671883 CAAGGGTAATTCCTATGCTCTG 59 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152 1 1 2 83 1 71677459 71677477 TAAGATCGAAGACGCTGGT 59 71675863 71677413 GCCTCCAACCCAATATTCTC 58 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 2 3 4 80 9 47030664 47030685 ATCTGCTTCGTTAAGAACACTC 59 47030721 47032111 GTAATTCTTGAAGTCAGGAACTGG 60 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365 1 2 3 89 8 87297899 87315794 CTATCTCAGAGCTGGACAGAC 60 87297830 87297848 TGTGACACTTCTCAGCCAG 60 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000091128 1 1 2 81 8 61715121 61715254 AAATCTGGACTGGGACTCAG 59 61715294 61715316 CCTGGTGTTAACATAGTCTACCA 60 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000083702 3 1 3 92 1 40879927 40899159 TTACCATCACAGTTGGACAG 58 40899213 40899232 TATCTTCAACAGCTGTGGAG 57 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 2 1 1 72 13 26768566 26768584 GATCCAGGATAACGGAGGC 60 26605742 26605761 GAAATCAAACAGAGGTCGCA 59 NA DesignNoJunction Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 1 2 2 80 2 27976386 27977918 CCTGACTCTGGACAAACTG 58 27977960 27977980 ATACTCCCTCTTGATACGGTC 59 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172 1 1 2 81 1 193201060 193202389 TTCACCAAGATCTCGGTGG 59 193202433 193202452 CTATGGCCAGGTACAGATCC 60 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 1 2 2 80 3 72450761 72450912 AGATGTTCTTTGTGATCAGCC 59 72450953 72450972 TTGAGAAGAGGAGGATCAGG 58 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 1 2 2 80 1 71434849 71434867 AAGAAGCTTGGTCTCCAGG 59 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000090186 2 1 3 91 5 61587767 61587785 GAGCTAAGGCTGATGTGGA 59 61587840 61589829 CTTTGGACTGAACCTGCTG 59 NA Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 2 2 2 80 5 57001656 57001675 AGAAGCTGTTGTGATTGGTC 59 56999846 57001614 GCTTTCAACTGTACTTGCTG 58 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073 1 1 2 80 10 96213898 96213918 CAGCCATATGGAAAGTCTGTG 59 96204367 96213856 TTTGGTCATAAGCTGCCCA 60 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 1 2 2 80 16 32457630 32457652 CAGGTGCTATTATGGACTTTCAG 59 32457689 32490249 TTGTATAATGAGTTCCAGCTGC 59 NA Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 2 2 2 80 1 141082497 141082516 TCCATGGCTATAACTCCCTG 59 141082558 141084949 TGAGAGGCACGTATATCCTG 59 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322 2 1 2 80 9 46763220 46765331 AAACCTGCTGACTTGACTG 58 46765373 46765393 ATAGTCTGTCACTTTGTGAGG 58 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322 3 1 2 80 9 46763217 46765329 CTCAAACCTGCTGACTTGAC 59 46765371 46765390 GTCTGTCACTTTGTGAGGTG 59 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000027617 1 1 2 82 2 211460441 211460459 CGATGACTGGATTGACCCA 60 211460505 211467932 CACAATCATCAACCTGCGA 59 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 1 2 2 80 5 157475738 157475757 TCACCTTGATTGGATTCAGC 58 157475800 157494436 CTTGGCAATCTTGCTCCTG 59 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 2 2 2 81 9 7027016 7029226 GCCAATCTTAACCTGTGGT 58 7029271 7029289 GAGTTGGGTATTTCAGGCG 59 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000089557 3 1 2 84 8 61794656 61799784 TTTCTCCCAAGGAATTTGCG 59 61799830 61799849 TGCTGTTTCCTTCTTTCCCT 60 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 2 1 1 120 8 36910007 36910025 ATATCCTGACTTTGCCTGC 58 36910550 36910568 GATGAAGCGCACGTATTCC 60 NA DesignNoJunction Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000005665 3 1 2 112 10 98385230 98388591 GGACCAAGATGGTGAAGAG 58 98383472 98385154 CAGGAGTTCCCAAAGAGTG 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000077863 1 1 6 80 5 158120074 158122140 AAGTGCAATGAGTTCACCA 58 158122183 158122202 GTTGTTGATCTCCTCCACAG 58 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000084085 3 1 2 81 5 154313242 154313262 TATGGGAACCCAGTACCTG 58 154313308 154313326 TGAAGAACTTGGACTTGCC 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 3 3 3 81 16 54174528 54174547 TTGGAAACTTTGTCCAAAGC 57 54174589 54183974 GTGTAGTCTCCTTGCATAGTC 58 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000077964 3 1 2 93 1 73727927 73727945 AGAAACTGCTCAAGGAGGT 59 73727628 73727870 CAAGATTGTCCAGGCAGAG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 3 1 8 61 20 4389462 4389480 CCTCATCTGCTACTCCCAG 59 4389003 4389021 TTCTACAGTCCACAGTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000048318 3 1 2 83 8 61813792 61813810 TTCTCATGGCAATACGCTG 58 61813857 61813877 TGTTGATAATGGAGGCCCT 58 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 2 2 2 80 8 22800760 22800778 TCATATCAGCATGCTTGGC 58 22799852 22800719 TATAAGCCACTTTCAGTTCTCG 58 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000020323 2 1 2 80 3 161238805 161238824 TAGGAGAACCCAACATCGAG 59 161238864 161239157 GGTACTTCTTAAATGCTGTGGG 59 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 1 2 2 80 2 225586276 225586616 TTACCTTTGGAAACATCCTCAC 59 225586656 225586675 CTCGAGAAATAGGCAGTCGT 60 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 2 2 2 80 2 225608211 225608229 AAACCGCTCTTATCACCAG 58 225608270 225608799 ACGGATATCTTCCTTTGAAGAG 58 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884 3 1 2 81 5 159530830 159531085 CTCTACACCAACGGACTGAG 60 159531129 159531147 CCACAAAGTTGAAGGCGAC 60 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000086242 2 1 2 90 3 80411621 80411640 CTACCGAACTTCCACTCAGG 60 80411689 80412765 GAAGAGCTGCTCTTTCTTATAGC 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 3 2 2 93 3 162414186 162422791 ACAATGAAATTGAGCGCGT 59 162422848 162422866 CCATATCTGGATGCGAACG 59 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286 1 1 2 93 3 172175530 172175548 AGCATTTGAACAGACCCAC 58 172175605 172176357 CACCTATGGAAGAGCTGTG 58 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000087254 3 1 2 82 5 77154284 77156267 TTGGAGTACCAAACTTGCCT 60 77156312 77156330 AACCAAAGCTACTTGGCCT 60 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 3 2 2 80 5 59069159 59069263 AAGGAGACACTGAAGTATTCCC 60 59069100 59069118 CGAAGGCTTGGACATTGAG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000073240 1 1 4 80 16 81666027 81666045 TAAGAGGGCGATCAAATGG 57 81666089 81676860 AATGTCCGGTTCAAGTCTG 58 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 3 2 2 87 16 66230930 66230949 GAAGTGTCAATTCGAGAGGG 58 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000008959 2 1 2 179 3 170998857 170999472 ACTTACGCAACCAAGAGTC 58 170999612 171000001 TGTAGATATCACATGCAGACTC 58 NA Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163 3 1 2 100 16 81999324 81999343 CATATTGCTTGTCACAGTCG 57 81994150 81999262 GCTGTACAGTCTGAGTTCTC 58 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 3 2 2 97 16 81120674 81121764 TCATCCTGCAGCAAATTGC 60 81121825 81121843 GTGGATGACAGAGTTGGGA 59 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000090674 2 1 2 126 16 81493514 81494835 GACAGTACCTGGACCAGAG 59 81494923 81496129 AGCTTCATACAGTTTGTCCAG 58 NA Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 2 2 2 84 16 82987073 82988035 CCATCATTTACAGGATTGTACAGG 60 82987012 82987034 GATCGTTTCTTAGATGCCTTAGG 59 NA Rattus norvegicus 81 SNORA17 ENSRNOG00000058595 ENSRNOT00000087401 2 1 1 60 5 3686325 3686343 TCATCAGTGGTGACAAAGG 57 3686364 3686385 AGATGTTCATAGATCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008152.1 ENSRNOG00000058109 ENSRNOT00000087161 3 1 1 80 2 46042440 46042621 CCCACAAGAAACATGGCTG 59 46042084 46042102 GTACAGACCATGAGCTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053556 ENSRNOT00000084488 1 1 1 60 2 260026388 260026407 CTGTGTCATGTGGATGTCAG 59 260026430 260026448 GAACACTGAGCACAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053556 ENSRNOT00000084488 3 1 1 61 2 260026393 260026412 TCATGTGGATGTCAGTAGGG 59 260026436 260026454 AGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000055674 ENSRNOT00000078526 2 1 1 66 2 185246836 185246857 CTCTTTCTCAATTGTTGTGGAC 58 185246884 185246902 AAGGTACCAGGCAGAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011090.1 ENSRNOG00000056030 ENSRNOT00000087814 2 1 1 60 2 157724043 157724064 TTACAAATGCTGGGATTACAGG 59 157724004 157724023 CATGTCCATGTGCTCAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000054115 ENSRNOT00000088135 2 1 1 72 2 119156571 119156589 TGCAGCCACTTAAGTAACC 58 119156625 119156643 ATCACCAAGAGTGCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058729 ENSRNOT00000077493 1 1 1 60 2 237871872 237871890 CCATGTCACTGTGCATCAG 59 237871830 237871851 AACACTGAATGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000056834 ENSRNOT00000088758 3 1 1 61 11 81375672 81375693 TTACTACAATATGGCTGCTCAG 58 81375632 81375653 AGAAACAATTGTTCTGAGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044629 ENSRNOT00000069896 3 1 1 60 11 53453892 53453911 GGTCGTACCATTCTGAACAC 59 53453851 53453873 GCTTATTAGCTTCCGATTCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053308 ENSRNOT00000086904 3 1 1 60 5 150939610 150939631 AACGACACAGAGAAGATTAGCA 60 150939571 150939589 CGCTTCACAAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055618 ENSRNOT00000086883 2 1 1 60 5 89705922 89705941 AGTAGGTGCATCAGAAGGTG 60 89705961 89705982 GGTCAGAATACTGAGTGTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061846 ENSRNOT00000090482 3 1 1 60 5 102142997 102143017 TGAAGAGAAGATTAGCATGGC 58 102142957 102142977 TGGAACCCTTCACAAATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058326 ENSRNOT00000077886 3 1 1 60 8 26093339 26093359 GGGAAAGGATACAGAAAGACC 58 26093381 26093399 TTGGAGGAGTCAGGATGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052471 ENSRNOT00000082689 2 1 1 61 5 39687910 39687928 TTCAGCAGCACATAACGGA 60 39687953 39687971 TGTCATCCTTGTGCAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060852 ENSRNOT00000091123 2 1 1 60 11 70879922 70879942 TTGACAGAGTTTGGAACAGAC 59 70879964 70879982 AGCTTAGAGGAAAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 1 1 1 116 11 43415692 43415714 TTTCTCTGGCTCGATCCAG 59 43415791 43415812 GTGGAAACAGCTTTCTTTATGC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041675 ENSRNOT00000063428 2 1 1 60 8 130864762 130864780 CAGCCTTGTCTGAACTTGG 59 130864720 130864740 TCTCCCATCCAAGTATGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000054774 ENSRNOT00000088446 3 1 1 66 8 44991645 44991664 TCGCTGTGATGATTGATTCC 59 44991693 44991711 AAGGAACTAGCCAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026534.1 ENSRNOG00000050993 ENSRNOT00000075497 3 1 1 60 16 81538491 81538510 CACTCTCAGGAACTACCCAC 60 81538533 81538551 CTTTGATCTGGGTGACCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054329 ENSRNOT00000083337 3 1 1 60 8 69123723 69123742 CTTACTCTGTTCACAGCGAC 59 69123765 69123783 TTCGTCAACCTTCTGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058394 ENSRNOT00000086778 1 1 1 60 16 52549557 52549576 CACAAACACTGATGTTGGAC 58 52549516 52549534 TACCATCCTTGTGCATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 3 2 2 90 X 22399683 22399827 TACGGAGACTAGAGGTCCG 60 22399611 22399629 GGGTATCGTCTGGAGAGGA 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041652 ENSRNOT00000063405 2 1 1 60 X 63048955 63048973 GAGGCTAAGCAGGATTGAC 58 63048994 63049015 ATTTGTATTAACCCGCTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052366 ENSRNOT00000080936 1 1 1 60 16 9834300 9834321 TAAAGCATTACTACCTCTGCCT 59 9834261 9834279 GTTTGAAGCCAAGCATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056178 ENSRNOT00000085819 3 1 1 60 6 74466472 74466491 GTCGTACTGTAGCTGTTGGT 60 74466513 74466532 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053020 ENSRNOT00000091748 2 1 1 60 6 65355665 65355685 CCCTAAGGCTTTATGGATGTG 59 65355707 65355725 TCTCCTCTGCCACTTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD20 ENSRNOG00000060216 ENSRNOT00000081260 2 1 1 75 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370602 93370626 GATCAGAACTTGACTATCTAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055112 ENSRNOT00000077634 1 1 1 60 1 193015759 193015778 TGGAACGACACAGAGAAGAG 60 193015718 193015736 TTCATGAATTTGCACGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000051831 ENSRNOT00000089050 3 1 1 60 1 11906540 11906558 ATGAAGAACGCAGCTAGCT 60 11906498 11906517 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD77 ENSRNOG00000051793 ENSRNOT00000082736 3 1 1 60 17 73704761 73704780 TATAGCATAGCTCGGCAGAC 59 73704802 73704821 ACCAGATAGGAGCGAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061208 ENSRNOT00000078679 1 1 1 60 9 25144425 25144443 TAAAGGTGCTGGAGGTGTG 60 25144383 25144403 CACTCACTTTGTCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA2 ENSRNOG00000054098 ENSRNOT00000090605 1 1 1 60 X 87163115 87163133 CACCCATCCACATTAGCAC 59 87163156 87163175 AGTCTAGCTCTAGGGATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054070 ENSRNOT00000083158 2 1 1 61 17 45678784 45678802 TGTTGGTTTCAAGCAGGTC 59 45678741 45678759 TTTCTGGAATGGCCAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067736.1 ENSRNOG00000041717 ENSRNOT00000063470 1 1 1 60 9 60070212 60070230 GGATGTCACATGGTGACAG 58 60070170 60070189 AACATATGCCTGTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042316.1 ENSRNOG00000056242 ENSRNOT00000085142 2 1 1 60 X 152584678 152584698 CATGCACTGTATTTGTCTGAG 57 152584638 152584658 TCAGGAACCATGAGGTATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000060706 ENSRNOT00000078847 2 1 1 60 6 133773689 133773708 ATCAATGATGACTGTGGGTG 58 133773728 133773749 GACTTGTTGTCATGATCATGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057864 ENSRNOT00000079306 2 1 1 60 2 213301994 213302013 ATAGAGGAGGACCGAATAGC 58 213301953 213301972 TTTGGGCAAATCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053669 ENSRNOT00000077361 2 1 1 60 2 182583931 182583951 CAAATAGAACCACCTTCCCTG 59 182583972 182583991 CTGCTTCCCATAACTTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044264 ENSRNOT00000069531 3 1 1 60 6 47310037 47310055 CTGCAGCTCAGTTGATCTG 59 47309995 47310016 TTCTCATCCCAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055998 ENSRNOT00000081879 3 1 1 60 2 94180519 94180539 AAGTCTGGATATGCTGACCTC 59 94180558 94180579 AAATTATGCAGTGGACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061021 ENSRNOT00000081505 3 1 1 61 2 139539917 139539935 ATGAGGTTTATCCGAGGCG 60 139539874 139539893 AAAGAGACATGAGGCTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058551 ENSRNOT00000089888 1 1 1 60 2 206573469 206573489 GCTATCTGAATGAAAGCACAC 58 206573510 206573529 GCATAGGGTGCTAATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059722 ENSRNOT00000089002 3 1 1 60 2 409872 409890 GATGAAGAACGCAGCTAGC 59 409830 409849 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053743 ENSRNOT00000081618 1 1 1 60 2 126550901 126550919 TGACAAGGCCTATCCACTG 59 126550941 126550961 TTCCAGAGTTTGGAGAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059241 ENSRNOT00000092220 3 1 1 61 2 205444437 205444455 TGACTCCTGTGGGAAAGTC 59 205444394 205444412 GGGAGTGTGAATACAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052438 ENSRNOT00000089877 1 1 1 60 6 80946285 80946304 TGTGTATCAGTAGGTGGCAG 59 80946244 80946265 TCATAGGTCAGAACACTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066059.2 ENSRNOG00000047886 ENSRNOT00000073390 1 1 1 60 9 954532 954550 CAGCAATGAAAGCTTTGGG 58 954569 954592 CTGTCTTACTAAGCTGTAACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000056420 ENSRNOT00000084307 1 1 1 63 2 260115728 260115746 TGAGCTGGCATGTATTCTG 58 260115683 260115707 CAGAGTAATTCTAGAGCTAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059693 ENSRNOT00000091783 1 1 1 60 9 19851923 19851943 AGGTACATGGTCTGTTTGAGG 60 19851883 19851901 TCCACTCTGTCTAGCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045087 ENSRNOT00000070354 2 1 1 60 1 177946027 177946045 GAGTGTGCCCAATCTTGTC 59 177946069 177946087 CGGAGTACTAACTAGGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.2 ENSRNOG00000056545 ENSRNOT00000087849 3 1 1 60 2 144807090 144807109 AAAGAAGAGCTGAGGAACCA 59 144807049 144807067 CCAGCCTTATTGATGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054285 ENSRNOT00000081186 3 1 1 60 9 64150481 64150501 CAAATGTGGGAAACTTCACTG 58 64150521 64150541 CCTGAATAAATGCACATCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068612.1 ENSRNOG00000048984 ENSRNOT00000073084 3 1 1 60 9 112127801 112127824 CCGTTTCTATAACGACACTAATCC 60 112127840 112127861 AGAGATGAGGGAATATGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055075 ENSRNOT00000090489 3 1 1 61 16 6181958 6181976 TATGCATATGGGAGGCAGG 59 6182000 6182019 CGTTAACCTTTGGTCACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.3 ENSRNOG00000055508 ENSRNOT00000082003 3 1 1 62 1 1886090 1886108 TCCGTGCATTTGAGATGAG 58 1886132 1886153 AGAGGCTTCGTAAAGAATTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055153 ENSRNOT00000081568 2 1 1 60 X 125070521 125070539 GACAGAGGCTATGTCTTCC 57 125070560 125070581 AGGTTACTAATCATTCAGGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056103 ENSRNOT00000085337 3 1 1 60 X 33746770 33746790 CCATTTGTAGGAGAACAGAGG 58 33746730 33746751 TCACATCTGGTAATGTCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.2 ENSRNOG00000052460 ENSRNOT00000086184 3 1 1 62 1 158913079 158913099 CAGCATTTGCTGTCACCTG 60 158913035 158913054 CTGAGATTTCACCTCACACC 58 Novel DesignNoJunction Rattus norvegicus 81 uc_338 ENSRNOG00000059139 ENSRNOT00000088828 1 1 1 60 16 68391102 68391120 GACAGGTACAGCATAGGCA 59 68391060 68391079 GGTACATGGACAAGATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006742.1 ENSRNOG00000036287 ENSRNOT00000054410 3 1 1 78 1 251158483 251158502 GTCTTTGTTGCAATCCTGTG 58 251158541 251158561 CATTAACAGCTGAGCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061721 ENSRNOT00000080731 1 1 1 61 7 12102970 12102990 GAACGACACAGAAGATTAGCA 59 12102929 12102947 AACGCCTCATGAATTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA13 ENSRNOG00000052095 ENSRNOT00000079733 2 1 1 60 X 122453724 122453742 CTGCTTAAGAGCCAGTGGT 60 122453765 122453784 ACCATGGAGACAGTATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052584 ENSRNOT00000083689 1 1 1 60 16 89613432 89613450 GTACTTGCTTCAGCAGCAC 60 89613390 89613409 GGGCATGTTAATCTTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053887 ENSRNOT00000082467 3 1 1 60 16 37180905 37180924 AGTGAATTCAATGGCTGAGG 58 37180864 37180884 AGTCTGAATTGGGTTAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000058691 ENSRNOT00000091579 1 1 1 60 X 107799819 107799838 GCACAGTTACTCTACAGCTG 58 107799858 107799879 GTATCAAATGCTTTAAGCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056995 ENSRNOT00000085198 2 1 1 61 11 14519041 14519061 GTGTGACTACTGTGTCATGTG 59 14519000 14519023 CATAGATATAGCTTCTGTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040821 ENSRNOT00000062574 3 1 1 60 11 11978348 11978368 CTTTATGGCCATATCACCCTG 59 11978384 11978408 CTCTGCTTAGCTTCAAAGATTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909704 ENSRNOG00000049596 ENSRNOT00000076262 3 1 1 80 1 271329336 271330179 GAGGCTCAGGATGAAATAACAG 59 271330218 271330238 GATTTCTTCCTTCAGCTGGTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052316 ENSRNOT00000081003 3 1 1 60 17 10713459 10713477 CTGGTTATGTGGGTGTCTG 58 10713501 10713519 CTGAACACTGGTCTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 3 1 1 177 12 50212219 50212237 AAAGCAGCAGTGGAAAGAG 58 50212021 50212043 CCACTTAGGATTGGCTTTCG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058194 ENSRNOT00000084879 1 1 1 60 X 51000388 51000408 GAAGCATTGAAGGTGTGACTG 60 51000348 51000368 TCTCTTCTTTCTGCCATCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055820 ENSRNOT00000078568 2 1 1 60 X 51002718 51002740 CGATACAGAGAAGATTAGCATGG 59 51002680 51002698 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055820 ENSRNOT00000078568 3 1 1 60 X 51002717 51002739 GATACAGAGAAGATTAGCATGGC 59 51002679 51002698 GAATGCTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000057204 ENSRNOT00000088422 1 1 1 60 8 13878035 13878055 CCAAATCTGAGCATCAGAAGG 59 13877995 13878016 CTCAGAACTATGGAGATCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057233 ENSRNOT00000081417 2 1 1 60 10 57854661 57854679 AGTAGGTGGCAGAGAAGAG 58 57854619 57854640 AGATGTCCATAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035854 ENSRNOT00000053977 3 1 1 60 4 17536158 17536176 CCCGATCTTGTCTGATCTC 57 17536116 17536136 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000051707 ENSRNOT00000082211 2 1 1 61 8 13867333 13867351 GACAAAGGCAGGTTGACAG 59 13867375 13867394 AACAATGAGTTCTGGGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060180 ENSRNOT00000078026 3 1 1 60 8 108159408 108159427 CCCTGAAGGCATTTATAGGG 58 108159450 108159468 TTTCTGTGCTACCTACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000052616 ENSRNOT00000091426 3 1 1 62 8 58229764 58229782 CTTCCCATGGGATCTCCAC 60 58229807 58229826 CAGCTTCAGTGTACTCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035203.1 ENSRNOG00000060198 ENSRNOT00000078541 3 1 1 60 12 6784069 6784089 CCTGTCCATTCTCAGAAAGAC 59 6780838 6784048 GGAATCACGGAAAGAGACTG 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA42 ENSRNOG00000055217 ENSRNOT00000087732 3 1 1 68 6 42853851 42853871 GGATTTATGACAGGCTCATCC 59 42853901 42853919 GTTAGGAGCCAGTTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051873 ENSRNOT00000083457 3 1 1 60 2 206686722 206686740 AGGCTCTGTCTATGCTCAG 59 206686761 206686782 TCTGAGTGCTAAAGTAGGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000058244 ENSRNOT00000087463 2 1 1 63 10 37601001 37601020 TGGGTTTGGATTTATGGCAG 59 37600957 37600975 TTGATCTAGCACGGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.2 ENSRNOG00000057986 ENSRNOT00000073132 1 1 1 93 12 2643869 2643888 CCTAAAGAAAGAGATGCCCA 57 2643791 2643816 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054705 ENSRNOT00000080634 1 1 1 62 6 11086914 11086933 TATGCGTCAGTAGATGGCAG 60 11086871 11086889 TCACAGGTCAGAACACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061173 ENSRNOT00000078794 3 1 1 62 10 25895179 25895197 AATGAGGTTTATCCGAGGC 57 25895221 25895241 AAGCAAGTACTCTATGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069736.1 ENSRNOG00000056194 ENSRNOT00000088001 2 1 1 80 8 38548334 38549175 TCTCCCTTCAAGCTTTGCA 60 38548272 38548293 GGCATATAAGTCTTCCAGTCAC 59 Novel Rattus norvegicus 81 AABR07034260.1 ENSRNOG00000053301 ENSRNOT00000084022 3 1 1 80 11 60336167 60342651 ACAAGAATCAGAGTCTTCACAG 58 60342691 60342710 CAGAAGATGGTCACGTTTCC 59 Novel Rattus norvegicus 81 AC103024.2 ENSRNOG00000050786 ENSRNOT00000073403 2 1 1 115 10 34317041 34317060 TTCCAGCTTGAGATAAGTGG 57 34317137 34317157 CAACAGAAGTTCAAGCAGTC 57 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000061486 ENSRNOT00000086763 3 1 1 60 10 103280335 103280355 GTAGAAACTTGGAAGAAAGCC 57 103280295 103280316 GGAAAGAAGTATTCCTTGTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057041 ENSRNOT00000081931 3 1 1 60 1 136805722 136805740 GAACCCAACATGGTAGCAC 59 136805762 136805782 ATTTGTCTGCCTCTTTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 2 1 1 60 15 43543654 43543674 AAAGCCCAGTTTAACACCCT 60 43543695 43543715 ACAAAGGAGTCAGTCTTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA29 ENSRNOG00000060660 ENSRNOT00000077760 2 1 1 60 4 120182137 120182157 AAAGTGCCATGATCTGAAGAG 58 120182097 120182121 CAGCCATTTCATATAGAGGAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057283 ENSRNOT00000082619 1 1 1 60 6 77437735 77437754 GTCACATGTACATCGGTCAG 59 77437777 77437795 CACATGTCAGACCACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061364 ENSRNOT00000086845 1 1 1 60 6 6221654 6221673 GGCTTTGGTAGCACATATGC 60 6221613 6221635 GGGACATGCTAATTCTCTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054980 ENSRNOT00000084404 3 1 1 69 4 72327437 72327456 TGCTTTGGCAGTACATATCC 58 72327488 72327506 TAATACTTGCAAAGGGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000052185 ENSRNOT00000079404 1 1 1 60 10 1137013 1137033 GTCACATGACACTGAACAACC 60 1137052 1137073 CAAGTCTGACTGCTTAGTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102546630 ENSRNOG00000051633 ENSRNOT00000090902 3 1 1 108 X 63999190 63999386 CCAATGTAGTGGAAAGGTGC 59 63999101 63999123 ACTCTTCTTTGTAGGTGGTACAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052797 ENSRNOT00000089020 1 1 1 60 8 95543709 95543727 CACTGTGTCACATGTGCAC 60 95543667 95543686 ACTGAGCATAAACAAAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 2 1 1 70 2 196582607 196582940 AAGAAAGAGGAGGAAGAGGAG 59 196582557 196582575 TTCCCTTCATCTTCCTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058255 ENSRNOT00000087605 3 1 1 60 2 201153264 201153284 ATGTCAGGCACATTAGTAGGT 59 201153224 201153242 CTGAACACTGAGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056547 ENSRNOT00000082416 1 1 1 60 X 1791142 1791160 GAATAGCTTGCTCTGTCCA 57 1791184 1791202 ACCATTCCTAGTGGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058575 ENSRNOT00000081978 1 1 1 60 2 181089729 181089749 CGCGATTATTGCTAATTGGAC 58 181089689 181089709 AGAGATTAGCACAGTTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052479 ENSRNOT00000083986 1 1 1 60 X 74879257 74879275 ATACTCACTTTGGCAGCAC 58 74879215 74879234 GGCCATGGTAATCTTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004756.1 ENSRNOG00000058731 ENSRNOT00000080976 2 1 1 61 1 154627183 154627203 AGATCAAGTGTAGAAAGCGTG 59 154627226 154627244 GGAAAGCATGGAGTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056123 ENSRNOT00000086102 3 1 1 60 2 20742192 20742210 ATATGTGGGCCAGTAGGTG 59 20742232 20742252 TTCACAGGTCTGAAGTCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060162 ENSRNOT00000089861 3 1 1 69 2 188408399 188408420 GCAGCACATATACTGAAATTGG 58 188408351 188408372 TTTGTGTCATCCTTACAAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000057863 ENSRNOT00000091917 1 1 1 60 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951569 186951589 GATGTTCACAGACCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052648 ENSRNOT00000084681 2 1 1 60 12 49959579 49959598 ACAGAGAAGATTAGCATGCC 58 49959538 49959557 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013412.1 ENSRNOG00000055035 ENSRNOT00000089472 3 1 1 117 2 236149835 236149867 AGAAGTTTCAAGGTTGTCGT 58 236149737 236149756 GTAATCTTTGAGTCTCCGCA 58 Novel Rattus norvegicus 81 AC141521.3 ENSRNOG00000055964 ENSRNOT00000089201 2 1 1 63 20 5690807 5690826 AAAGACCTCCACAAACTCCT 59 5689735 5689753 GTCACAGCTGGAGATCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027872.1 ENSRNOG00000055197 ENSRNOT00000078555 1 1 1 94 17 47876025 47877428 AAAGAAAGTTGCTCTGAGTACC 59 47878020 47878038 TATAGTAGGCAGAGGTGCC 58 Novel Rattus norvegicus 81 AABR07027872.1 ENSRNOG00000055197 ENSRNOT00000078555 2 1 1 95 17 47876025 47877428 AAAGAAAGTTGCTCTGAGTACC 59 47878020 47878039 GTATAGTAGGCAGAGGTGCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058403 ENSRNOT00000078269 2 1 1 60 4 101781589 101781611 TGTTAGTAGGAGGTAGAGAAGAG 58 101781551 101781569 GTCAGGACATCAGTGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050152 ENSRNOT00000075483 3 1 1 82 18 54247821 54495021 GTCTGGTCTTATGAGATGCA 57 54495066 54495084 CTGTTGTGAAGGTCTTGGA 57 Novel Rattus norvegicus 81 AABR07029938.2 ENSRNOG00000057597 ENSRNOT00000081750 3 1 1 80 10 60626301 60626320 TTCACCTCAGTTCCTTCTCC 59 60626236 60626257 GTGAAGTACTGCAGAAACGG 59 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 3 1 1 66 16 19954764 19954787 TTAGCTCATTTCCTGGTATGAC 58 19954814 19954832 GTAGGCCATGAGATCCACC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054510 ENSRNOT00000086615 1 1 1 64 10 63946018 63946036 GAGAAGATTAGCATGGCCC 58 63945972 63945993 GAGCTATAGGAACAGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000058604 ENSRNOT00000088265 1 1 1 60 2 198316020 198316038 AGCACATTTCTGATGTGCT 58 198316061 198316080 GGCTAAAGTAGTCATGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052820 ENSRNOT00000082690 1 1 1 60 14 3385290 3385308 TCAGTCTGTGGTATGTGGG 59 3385332 3385350 TCTGAGAGCTTGTTTGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 3 2 3 80 9 4103978 4104131 TATGAAGAGGGACCCAAAGC 60 4104172 4104192 TTATCCACGACCTCTTCATCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061066 ENSRNOT00000079835 1 1 1 60 2 153324385 153324405 AATGATACAGGGATTAGCACG 58 153324345 153324364 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112348.1 ENSRNOG00000011974 ENSRNOT00000015914 1 1 1 82 8 42389547 42389568 CTGGTTTGGATTGTCCAGAG 59 42389484 42389502 AATGTTTCCCACCACTGTG 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000060659 ENSRNOT00000092080 3 1 1 60 10 74764131 74764151 CAGTATCGTAGCCAATGAGGT 60 74764172 74764191 GCCCACTCCTTTCAATTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058528 ENSRNOT00000078480 1 1 1 60 1 115490137 115490159 GTCACATGAATATCACTAGGTGG 59 115490099 115490123 CAGAATACTGAATGTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051435 ENSRNOT00000089285 3 1 1 60 14 81467301 81467319 CCATGTTTACGAAGGTGGT 58 81467259 81467277 GAGGTGTCAGTACATCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130862.3 ENSRNOG00000056968 ENSRNOT00000080692 1 1 1 83 X 105563548 105563566 ATCTCCACTACGTGGTCCT 60 105563482 105563501 ATACCCATCCAAGCGTTCC 60 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059300 ENSRNOT00000091862 2 1 1 60 10 45963459 45963477 CTGATCTCCAACTGCATGC 59 45963501 45963519 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008440.1 ENSRNOG00000055126 ENSRNOT00000083965 2 1 1 60 2 58647444 58647465 GAAATGCCTCTATGAGATCCAG 59 58647405 58647429 CCTTCCTCCTTAATCACTAATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mup4 ENSRNOG00000033130 ENSRNOT00000046760 1 1 1 90 5 77406765 77407478 TTTGTTGAGCATGACGGAG 59 77406693 77406714 CGTTCTTGACATTAACAAGGTG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061802 ENSRNOT00000089067 1 1 1 60 1 244839413 244839434 ATCTGTTCCCTTATTGATTGCC 59 244839455 244839473 CATCCCTGTCTAGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054119.1 ENSRNOG00000056902 ENSRNOT00000081089 2 1 1 60 3 142094379 142094401 CTGGGTAAGGTCTAAGAATTTGC 60 142094419 142094439 TAAGTAGCTTCAGCATCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110387.1 ENSRNOG00000054854 ENSRNOT00000080741 3 1 1 60 1 196095415 196095435 AAGTGTGGAGTTATAAGCCCT 59 196095457 196095475 TCTGCCACTTCTCTAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094647.1 ENSRNOG00000055176 ENSRNOT00000078000 3 1 1 60 1 251600526 251600545 GTCAAAGAAGCTGTGAAGGA 58 251600485 251600506 CATATGCACAGTCAATATGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055547.1 ENSRNOG00000049883 ENSRNOT00000072038 1 1 1 88 7 5700144 5700165 TGATCCTCAGCTTCAAATTCTG 59 5700208 5700234 GGGTGAGGAAGATAATTATTAACCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053573 ENSRNOT00000078335 1 1 1 64 17 51029036 51029057 TTAACTAGGTAGATCTGACCCT 57 51029082 51029100 TTTACAGCTTCGGGAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053573 ENSRNOT00000078335 2 1 1 65 17 51029034 51029056 GATTAACTAGGTAGATCTGACCC 58 51029081 51029099 TTACAGCTTCGGGAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135645.1 ENSRNOG00000054126 ENSRNOT00000090147 3 1 1 60 3 80885763 80885782 CTGGTAGAAGAGCGATTCAG 58 80885722 80885741 CTCCTTACCTGTATGACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035114 ENSRNOT00000053237 3 1 1 62 12 24523086 24523104 TCTGCAGGAAGCTAAGCAG 60 24523130 24523148 TATTCCCAGGAGGTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054450 ENSRNOT00000077558 1 1 1 60 2 93811822 93811843 GTTGGAACGATACAGAGAAGAC 59 93811863 93811882 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 2 1 1 74 1 165284444 165284466 CCACTGATATTTCTAAAGCCGA 58 165284501 165284519 GGTAGAGCAGGAAAGGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060028 ENSRNOT00000078604 2 1 1 60 2 177737271 177737289 AGTGCTACTGTGTCACAGG 59 177737311 177737331 TGAGTATCGTATCCCTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052892 ENSRNOT00000079496 1 1 1 61 2 186583601 186583619 TCACATGTGCGTCAGTAGG 60 186583558 186583578 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004101.1 ENSRNOG00000049002 ENSRNOT00000071114 2 1 1 66 1 125082623 125082641 TACTGGGAAGACAGCTCCT 60 125082575 125082593 CTACTCTTTGCCAAGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061497 ENSRNOT00000090862 3 1 1 60 2 124471349 124471371 GATACAGAGAAGATTAGCATGGC 59 124471391 124471409 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051604 ENSRNOT00000079645 1 1 1 60 14 45212954 45212978 GATACAGATAAGATAAACATGGCCC 60 45212995 45213014 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058387 ENSRNOT00000087844 3 1 1 61 1 254519560 254519578 TTGGTCATAGGTGGCAGAG 59 254519600 254519621 GTTCATTGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 2 2 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164331 75167554 CCAGAATAAGAGCCTTCATCCT 60 Novel Rattus norvegicus 81 AABR07004263.1 ENSRNOG00000048799 ENSRNOT00000073974 1 1 1 60 1 134605377 134605398 TTGAACTCAGAGATCTACCTGC 60 134605419 134605437 GTGGTGCATGCCTTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058031 ENSRNOT00000081602 3 1 1 60 1 173139664 173139683 CTTTGGTCAAGGGTATACGA 57 173139706 173139724 TGAGAGCTTGTTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045036 ENSRNOT00000070303 1 1 1 60 2 66694886 66694906 ATCAAACCTGGTTAGTTGGAG 58 66694926 66694946 CTACAGAGCTCCCTTATTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072363.1 ENSRNOG00000041613 ENSRNOT00000063366 3 1 1 60 14 2792139 2792159 GGCCTTAAACTCAGAGATCCA 60 2792178 2792199 CACATGCCTTTAATCCTAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055162 ENSRNOT00000080902 2 1 1 60 1 264686100 264686122 GGAACAATACCAGGAAGATTAGC 59 264686142 264686160 CGTCATGAGTCTGCTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063829.1 ENSRNOG00000043366 ENSRNOT00000065561 1 1 1 88 6 51663234 51663254 GTGCTTGTGTAATAAAGCCAG 58 51663305 51663323 CTTCTGTCCAGAAAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060992.2 ENSRNOG00000052923 ENSRNOT00000079328 1 1 1 60 4 102262011 102262029 TTGTGATGACTCAAGCTCC 58 102262053 102262071 GAGATGGAAGCTGACTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056535 ENSRNOT00000090084 2 1 1 60 3 123241706 123241726 TGAAACGACACAGATACTAGC 58 123241748 123241766 CGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059275 ENSRNOT00000077115 2 1 1 63 2 5855378 5855397 TGAGTTCTTAGGTGGCAGAG 59 5855334 5855354 TGTTCATAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056391 ENSRNOT00000077891 1 1 1 60 2 130414534 130414552 GTGCATCAATAGGAGGCAG 58 130414576 130414594 CATGGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064257.1 ENSRNOG00000053367 ENSRNOT00000077473 3 1 1 81 6 71601522 71601546 TGAACTCAAGCAGTATAGAGCA 59 71601462 71601486 TCTATTCCATTGGTCTATCTGTCTG 60 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000059739 ENSRNOT00000091549 2 1 1 60 1 82671588 82671609 TCTAAGTCAGTTGTTCTCAGTC 58 82671549 82671570 GAGAAGGAGAAGTATAGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059739 ENSRNOT00000091549 3 1 1 60 1 82671586 82671608 CTAAGTCAGTTGTTCTCAGTCAG 59 82671548 82671568 CGAGAAGGAGAAGTATAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061029 ENSRNOT00000078858 1 1 1 61 14 18972551 18972572 AACACAGAGAAGATTAGTCTGG 58 18972592 18972612 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022057.1 ENSRNOG00000060929 ENSRNOT00000086497 2 1 1 60 13 104816508 104816528 CCTGTCAGTTCTCTTCTTCCT 59 104816550 104816568 CATCAGGAAGTAGGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008724.1 ENSRNOG00000019037 ENSRNOT00000025809 3 1 1 81 2 71753818 71754347 CAAAGTTACATCAGCTCAGGA 58 71754387 71754408 CAATTCCACCTTCAGATTATGC 58 Novel Rattus norvegicus 81 Miat ENSRNOG00000051028 ENSRNOT00000076905 1 1 1 60 12 50433759 50433777 GGAAGCCAAAGGCTTTACC 59 50433801 50433819 GTTCGGAAGGTTCAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002906.1 ENSRNOG00000048447 ENSRNOT00000074997 3 1 1 80 1 88780027 88780047 CCTTTCTCTGTCTGTCACC 58 88780089 88780109 TAGTGATGCCCTAAAGAATCC 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000056570 ENSRNOT00000084278 3 1 1 61 1 98727404 98727422 GAGAAGATTAGCATGGCCC 58 98727361 98727379 AAATGTGGATCGCTTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000051415 ENSRNOT00000082279 2 1 1 60 1 31978191 31978210 CACTAAGCCATTGAGAAGGG 58 31978150 31978169 ATATGTTGCCACTTCACCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052443 ENSRNOT00000086181 3 1 1 61 1 252595061 252595079 GTGAAGATTAGCATGGCCC 59 252595103 252595122 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053837.1 ENSRNOG00000054840 ENSRNOT00000077213 3 1 1 60 3 129857263 129857281 CTCGCCTGCATTTACTCTG 59 129857305 129857326 TCTTATCCTCCGTGACCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07005004.1 ENSRNOG00000054551 ENSRNOT00000083317 2 1 1 60 1 174133690 174133708 TGTGAACTGAGGGAACCTG 59 174133731 174133750 CTGAGGCAACAAGCAATACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059718 ENSRNOT00000081322 1 1 1 60 5 154482805 154482825 ACTAAAGTTGGGACAACACAG 59 154482847 154482865 ACTCGTGAGTCTTGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057535 ENSRNOT00000084532 3 1 1 60 1 147142720 147142742 GATACAGAGAAGATTGGCATGAC 59 147142682 147142701 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006327.1 ENSRNOG00000041469 ENSRNOT00000063222 1 1 1 66 1 229066001 229066021 CATTGGAAGAAGGAAGATCCC 59 229065955 229065973 TCTAGCAGTTGCTCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060812 ENSRNOT00000090190 2 1 1 60 2 265810692 265810710 GTGCTAAATTCAGCAGCAC 58 265810733 265810752 GGCCTTGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 1 2 2 80 4 29561556 29561575 GAAGGCTCTAGAAAGAACCC 58 29561617 29562205 CCAGTAGTAATCGCTCTTCC 58 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000056880 ENSRNOT00000086858 1 1 1 60 2 260144026 260144046 GGACTTCTGTCAGTAATGCAC 59 260144068 260144086 CCTTAGAGGAAGACTCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056211 ENSRNOT00000089802 2 1 1 60 3 84387617 84387639 GATACACAGAAGATTAGCATGGC 60 84387656 84387677 GAATACTTCACGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061535 ENSRNOT00000089253 3 1 1 60 2 176306156 176306177 GGACTATCTTCCCAGAATACAG 58 176306117 176306135 ACGCAGCAACTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042607.1 ENSRNOG00000060419 ENSRNOT00000078228 3 1 1 96 19 248694 248725 ATTAAAGAGCTGCAGGAGAG 57 249247 249265 ATGGATTTGGCCTGAAGTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060015 ENSRNOT00000091083 2 1 1 60 1 207372746 207372766 ACATGTGAGTCAGTAGTAGCA 59 207372706 207372726 AGGTCAGAGCACTGATTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054691 ENSRNOT00000088249 2 1 1 85 14 48886934 48886953 ATCCTGGCAAAGAACATGTC 59 48886868 48886889 CACTACCACAAATTATGCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055645 ENSRNOT00000086593 1 1 1 60 6 87391969 87391987 GTGCTAGAAAGGAGGGAGG 59 87391927 87391946 CACTCAGATGTTCACAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060969 ENSRNOT00000088467 2 1 1 60 1 90304248 90304269 ATAGATTTGACTGTTCTGGCTG 59 90304209 90304227 ACATGAAGTGGTGAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014804.1 ENSRNOG00000024829 ENSRNOT00000039626 2 1 1 60 14 32258021 32258040 AAAGTCCAAGCTTCCCTCTC 60 32258063 32258081 GTTTGGCTTCTGCATGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052335 ENSRNOT00000084364 2 1 1 60 14 104349654 104349675 AACGAAGTAGAGAAGGTTAGCA 59 104349615 104349633 AACGCATCAGGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063621.1 ENSRNOG00000055827 ENSRNOT00000077815 3 1 1 60 6 37325270 37325289 AAAGTAAAGTTCGGGCTGGA 60 37325311 37325330 TATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059986 ENSRNOT00000083456 2 1 1 60 6 21808906 21808928 GATACAGAGAAGATTAGCATGGC 59 21808868 21808886 GAACGCTTCAGGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059301 ENSRNOT00000086989 2 1 1 60 6 137104993 137105011 GTGCACTCAGTTGAAGAGG 59 137104951 137104969 GTCCTTGGCCTAAGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.1 ENSRNOG00000042410 ENSRNOT00000066076 1 1 1 60 19 30668848 30668866 GCACAATCATCCGCTTGAG 60 30668806 30668824 AAGATTCTGGAGGGTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049048.1 ENSRNOG00000054330 ENSRNOT00000085610 2 1 1 93 5 101640204 101640225 TACTTTACAGTTAAAGGCAGGG 58 101640278 101640298 ATTTACACAGAAGCTCCAGG 58 Novel Rattus norvegicus 81 AABR07065139.1 ENSRNOG00000053311 ENSRNOT00000087462 3 1 1 80 6 111540167 111541617 ATATCAAGCCTGTGCAGTC 58 111541659 111541679 GTTTGTACTGGACAAAGTCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053012 ENSRNOT00000088510 3 1 1 61 1 234086466 234086485 TGAGTCAGTAGGTAGCAGAG 58 234086424 234086442 ATAGGTCAGAGCACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 1 1 1 64 13 77850554 77850574 AGAAGACACCAAGAGAAACAC 58 77850600 77875993 AAACCCAGCTTCCAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000060039 ENSRNOT00000082222 2 1 1 60 14 84619510 84619528 AGTTGGAATAGGAGCTTGC 58 84619468 84619488 TGGAGATACTGCAATACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012467.1 ENSRNOG00000060494 ENSRNOT00000075272 2 1 1 60 2 195486476 195486498 TGTTGTAAGGTGTCTGTAGTAGG 60 195486438 195486458 CAGGTGTCATGTTATGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045650 ENSRNOT00000052983 1 1 1 60 3 159426735 159426753 CCTGAACATGCCCAATCTC 59 159426777 159426795 GTACTAACCAGGCCTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056709 ENSRNOT00000090484 3 1 1 64 3 155054497 155054515 GGGCGGTTATTGCTAACTG 59 155054451 155054469 CGACTGTATTTCAAGCCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000058531 ENSRNOT00000083854 2 1 1 61 1 116751248 116751269 GACAACAGAAAGTCAAGAACAG 58 116751208 116751228 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 3 1 1 61 8 13223534 13223557 TAAGTTGCTTCTGATGTCGG 58 13223581 13223599 TCCTGCTCATCATGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 2 2 2 90 18 14776135 14905594 TGCCTGGATGTTCAAATTGG 59 14905647 14905665 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 Rn60_13_0849.2 ENSRNOG00000051254 ENSRNOT00000076116 2 1 1 80 13 79913055 79913078 CAGAAACTGAATACTTGGATGGAC 60 79913117 79934297 TCCAGATGTATCCAGCCAC 59 Novel Rattus norvegicus 81 ENSRNOG00000050282 ENSRNOT00000072389 3 1 1 80 1 198971940 198972073 GCTGGATGATGAAGATGGG 58 198972115 198972135 TGTTCTTCAACCTCTATGGTC 58 Novel Rattus norvegicus 81 SNORA73 ENSRNOG00000054876 ENSRNOT00000088349 2 1 1 60 1 41003944 41003964 CCTACAACTTCTCAGAGTCCC 60 41003983 41004004 ACTGTTTCCTGCATAGTTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036163 ENSRNOT00000054286 2 1 1 60 12 9651867 9651886 TTGCTCTTGTGAAGCTAAGC 59 9651909 9651927 CCTAGCATTCTCCCATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059222 ENSRNOT00000081487 3 1 1 60 3 17888231 17888253 GATACAGAGAAGATTAGCATGGC 59 17888193 17888211 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.4 ENSRNOG00000059022 ENSRNOT00000089085 3 1 1 73 15 30785275 30785294 TTACTCCTAGGCCTTCACCT 60 30785468 30785486 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 3 1 1 117 2 78427509 78427527 TGATCTGTATGCCAACCCA 59 78427357 78427428 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0740.2 ENSRNOG00000051175 ENSRNOT00000076615 3 1 1 81 X 73082069 73086674 AGGACCTTGAAAGGTAGAGG 59 73082007 73082025 GCAGCTGGATATGACACTG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000049293 ENSRNOT00000075643 3 1 1 60 12 29014606 29014624 TCTCAGAAGCTAAGCAGGG 59 29014564 29014584 ACCTAATACTTCCTGGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011697.1 ENSRNOG00000054429 ENSRNOT00000078007 3 1 1 138 2 166319733 166319753 CATGGAGTCTCAGGGTGTG 60 166319613 166319635 CACCAGAAGTTTCTTCATACACC 60 Novel Rattus norvegicus 81 AABR07021204.1 ENSRNOG00000055008 ENSRNOT00000082129 2 1 1 81 13 60619434 60619452 ACTTCCAACTGCTACTGCT 59 60619491 60619515 CCAAAGTATGAGTAGTCTATTCTGG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 SNORA15 ENSRNOG00000060780 ENSRNOT00000082218 2 1 1 60 2 32986429 32986448 AGTCCCTAATTTACACAGCC 57 32986388 32986407 TCGACCATCTTAAAGGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044394 ENSRNOT00000069661 1 1 1 60 7 78039829 78039848 CCAGACCATTAGAATGCACC 59 78039788 78039808 CTTGATTGACTCTGCTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051251.1 ENSRNOG00000056471 ENSRNOT00000078985 1 1 1 80 3 4106558 4107867 CATACTGAGCAGCTCTTAGG 58 4107909 4107928 GTCCTTCCATCTCCATTCAG 58 Novel Rattus norvegicus 81 AABR07004021.1 ENSRNOG00000047301 ENSRNOT00000071117 1 1 1 60 1 122653680 122653698 CCAGCTCTAAGCTGGATCC 60 122653638 122653658 TTCTCTATTGAGCAGAGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000061635 ENSRNOT00000088200 2 1 1 60 1 110734992 110735011 ATAGCTGTTGGTTTCAAGCA 58 110735031 110735052 GAATAGCCAACAAACTACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052960 ENSRNOT00000086153 1 1 1 60 2 30166712 30166733 CAAAGAGGAGTTCTCATTAGGT 58 30166754 30166772 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000052791 ENSRNOT00000077654 1 1 1 60 3 63024761 63024781 TTCATAGCTGACTGCTATCCA 59 63024721 63024740 CATCCACCACTCATCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000059407 ENSRNOT00000089077 3 1 1 60 2 217476726 217476744 TTGAGGTCTATCCCGATGG 58 217476766 217476786 TATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056170 ENSRNOT00000086983 3 1 1 60 6 108384360 108384382 GATACAGAGAAGATTAGCATGGC 59 108384322 108384340 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055208 ENSRNOT00000077260 3 1 1 61 6 43246856 43246879 CGATACAGAGAAGATTAGCATGAC 59 43246899 43246917 GAACGCTTCACAAACTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060792 ENSRNOT00000089461 2 1 1 60 6 63954003 63954021 TGACTTGACTGATCTGGCT 58 63953961 63953982 GGGAGAACATACATGAGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055077 ENSRNOT00000089186 1 1 1 60 9 120323381 120323399 GTGTTACATGCCAGTAGGT 57 120323339 120323359 GTCAGAACACTGAGCTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059917 ENSRNOT00000089815 3 1 1 60 5 173170960 173170978 GGCATGATGGAGATTAGCA 57 173170918 173170936 GAGTGGTTCATGGGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126071.2 ENSRNOG00000053760 ENSRNOT00000087251 3 1 1 103 10 15408747 15408765 ATTTCCTAGCTGTGCTGGG 60 15408659 15408679 AATTCCTTCAACCCAGAGGG 60 Novel Rattus norvegicus 81 AABR07027799.1 ENSRNOG00000056731 ENSRNOT00000077512 3 1 1 60 17 44419606 44419624 CTGGTGATGCTTCCAACTC 59 44419564 44419585 CAAGATAGTCATCATCCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 2 1 1 64 15 31951126 31951336 TCTGGCTTCAACTGAGTGG 60 31951364 31951382 ACTGAGTGATTCTGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042226.1 ENSRNOG00000058521 ENSRNOT00000088194 2 1 1 82 X 150660901 150666257 CATATAAGTTACACGGCAGCA 59 150660839 150660858 ACACTCATCAGTCACAAGGT 59 Novel Rattus norvegicus 81 AABR07050321.2 ENSRNOG00000060181 ENSRNOT00000091640 3 1 1 123 5 161035118 161035136 GAGCTCAAGGTAGGGAGAG 59 161035013 161035031 GAACCACAATGCAAAGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017104.1 ENSRNOG00000058491 ENSRNOT00000075684 1 1 1 80 15 11091342 11091363 AAGAACTCAAGAAGTTAGACCG 58 11091403 11091424 CAGCTGTGAATTCGTTTAGC 58 Novel Rattus norvegicus 81 SNORA19 ENSRNOG00000056925 ENSRNOT00000087467 3 1 1 62 1 216764241 216764259 CCCTGGAAGGAAATGAGCA 60 216764285 216764303 TGCTGTCTGAAGGTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052871 ENSRNOT00000084931 2 1 1 60 1 167899405 167899425 TATGATGCTGTGCTACAAGTG 59 167899365 167899386 AGGTAGACATAGCATCTTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044566 ENSRNOT00000069833 2 1 1 60 1 255816903 255816923 ACCCTATCCTCAACCTATCTC 58 255816944 255816963 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691843 ENSRNOG00000058174 ENSRNOT00000090742 1 1 1 60 3 77365120 77365141 GCCACTCATCTTTACCTATGTC 59 77365081 77365100 AGCAAATACCTTGTCATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057140 ENSRNOT00000084778 2 1 1 60 1 161893116 161893137 GATACAGACAAGATTAGCACGG 59 161893077 161893098 GAGTGCTTTACGAATTCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 2 1 1 65 1 169095042 169095060 CAAGAGGAGCAGATCCGAG 60 169095089 169095108 CACAAAGAACACAAGCACG 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000042445 ENSRNOT00000035001 1 1 1 80 10 104440795 104440813 AGCGCACGGTTAAATATGG 59 104440857 104440993 GAGATGCTTGCCCTTTCAG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041894 ENSRNOT00000063647 1 1 1 60 6 54541813 54541834 TTTATGGCTACATTACCCTGAG 58 54541855 54541873 AACCCTGCTTAGCTTACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061131 ENSRNOT00000085388 2 1 1 60 13 99460392 99460414 TGGAACGATACAGAGAAGATCAG 60 99460434 99460452 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD86 ENSRNOG00000051605 ENSRNOT00000086450 2 1 1 60 3 122806419 122806438 TTACAGTGATGGCTGACCAG 60 122806459 122806479 CCATCACTCCCATAGTAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.2 ENSRNOG00000055072 ENSRNOT00000085556 1 1 1 82 1 99868061 99868079 ATCAACAGATACCTCTGCG 57 99867081 99868017 TGGTAATTGTGGCTATAGCAG 58 Novel Rattus norvegicus 81 AABR07003241.2 ENSRNOG00000055072 ENSRNOT00000085556 3 1 1 83 1 99867081 99868017 CTGCTATAGCCACAATTACCA 58 99867018 99867036 TTGACAAACCGGTACTGTG 58 Novel Rattus norvegicus 81 SCARNA3 ENSRNOG00000060868 ENSRNOT00000089475 2 1 1 60 6 103567636 103567657 GTCCTACATGAATATGGAGGTC 58 103567597 103567615 GAACGATCAGACTTAGCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057932 ENSRNOT00000077420 2 1 1 60 14 114778094 114778115 ATACAGAGAAGATTAGCATGGC 58 114778055 114778074 AGAACGTTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017878.1 ENSRNOG00000061789 ENSRNOT00000081436 2 1 1 98 15 32188776 32188984 AGTTTCATTGGGTGAGCAG 58 32189044 32189064 TACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 SNORA27 ENSRNOG00000061144 ENSRNOT00000083541 2 1 1 60 14 36664777 36664795 AGGGTAAAGGAAGTCTCCA 57 36664735 36664753 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048770.1 ENSRNOG00000031344 ENSRNOT00000049192 3 1 1 60 5 90797408 90797430 CTCAGATGTATGATGGATCTCAG 58 90797370 90797390 ATTTCTGAATCATCCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059747 ENSRNOT00000087317 3 1 1 60 14 85784522 85784541 CTAGAGGCATTGCAGATGTG 59 85784481 85784500 ACACAGCCTCTTTCCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012313.1 ENSRNOG00000009445 ENSRNOT00000012507 2 1 1 133 2 192953057 192953075 TCTGGATGCTGTAGCAGTG 60 192953173 192953191 TCTTCCTCACTGAGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000054827 ENSRNOT00000086749 3 1 1 60 7 109924547 109924567 ATCTCATCTGATCTCGGAAGC 60 109924507 109924529 TTTCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055615 ENSRNOT00000085884 2 1 1 62 2 32319597 32319620 CACTAACATTGGAACGATACAGAG 60 32319558 32319576 ATTTGCGTGTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017804.1 ENSRNOG00000052364 ENSRNOT00000079661 2 1 1 85 15 31209812 31209962 TAATGTTTGGAGGAAGCAATGG 59 31210007 31210026 GTTCACAGTCAAAGAAGCCC 60 Novel Rattus norvegicus 81 AABR07006727.1 ENSRNOG00000052057 ENSRNOT00000082874 1 1 1 60 1 250300925 250300943 CTGGAGGAAGACTTTGCGA 60 250300883 250300902 TCTCCAGCTCTTTGATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370,ENSRNOT00000090367 3 2 2 80 2 257537548 257537567 CTCCAAGAGGAGTTTGAAGC 59 257514505 257537508 CAGATCTGTGTCTTTGTCAGTG 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059323 ENSRNOT00000089011 1 1 1 60 1 188590263 188590282 GAACAATCTGCATGCCAGAG 60 188590222 188590240 CAGGCACTGTGATAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059031 ENSRNOT00000087362 2 1 1 60 3 34622608 34622628 GTAGAATAGGACAACCTTCCC 58 34622646 34622668 CACAGCTATTCTTGACCTAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109023.1 ENSRNOG00000055888 ENSRNOT00000077254 3 1 1 89 4 88082677 88082698 AGCCAATATGTTTCTCTGCT 57 88082750 88082768 ATGAAGGTCATTTGGCAGG 58 Novel Rattus norvegicus 81 AABR07054473.1 ENSRNOG00000040443 ENSRNOT00000062196 2 1 1 62 3 155351401 155351420 GACATTTGACCTGTCTGTCG 59 155351445 155351463 GACAGACAGACCGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057302 ENSRNOT00000079051 3 1 1 60 1 4731982 4732002 TCTCAGTAGGTGACAAACAGG 60 4732023 4732042 TGTTCATCTGTTGATCGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059104 ENSRNOT00000081887 1 1 1 60 1 104456803 104456822 GGAGAGCTGTCTGTACTGTC 60 104456844 104456863 CTAGCCAGATCAGCTGACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056618 ENSRNOT00000078724 3 1 1 60 20 38742403 38742421 CTTCCAAACCAGCTTCGAG 59 38742361 38742379 CAACTTGTCCAGGTTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123213.1 ENSRNOG00000048422 ENSRNOT00000074750 1 1 1 60 4 153354002 153354020 GCCTGGTCTACAGAGTGAG 59 153353960 153353978 TTCTACACAGGGTTTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051971 ENSRNOT00000083852 2 1 1 60 13 54153017 54153035 CAACACAGAGAAGATCGGC 59 54152975 54152996 GACCACTTCATAAATTCGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028768.1 ENSRNOG00000060274 ENSRNOT00000091937 2 1 1 60 17 85500310 85500328 CAACAACAGCAACAACAGC 59 85500351 85500370 AATGACCTTAGTGTTGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0032.5 ENSRNOG00000058784 ENSRNOT00000087909 2 1 1 84 20 3171852 3199250 ATTCTTAGCAGGTGGTGGG 59 3171786 3171804 TCATTGTCCAGGAGTTGCT 59 Novel Rattus norvegicus 81 AABR07072283.2 ENSRNOG00000059673 ENSRNOT00000081208 3 1 1 66 12 24744876 24744894 CAAGGAAACATGACCGCTG 60 24744824 24744844 CCTGGCTCTTTGTGTTAATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC139392.1 ENSRNOG00000043550 ENSRNOT00000068817 1 1 1 62 6 22208107 22208125 TTCTCTGTGTAGCCTTGGC 60 22208063 22208081 CTAAGTTCAAGGCCAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000058211 ENSRNOT00000090237 1 1 1 60 2 155399747 155399767 TTGGGAACACTGAATCATGAG 58 155399707 155399726 ACCACCCTGTCTTACTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058607 ENSRNOT00000089430 3 1 1 60 5 106328531 106328552 TGTTGTGTTACATGTGTAGGTG 59 106328573 106328591 TGGAACACTGAGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053563 ENSRNOT00000083084 3 1 1 60 3 20410590 20410611 AGTACAGAGAATTAGCATGGCT 59 20410551 20410572 TGGAATGCTTCAAGAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000055094 ENSRNOT00000091248 3 1 1 60 3 129328782 129328803 AAGACTTTGCTGATACACTCCT 60 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057161.1 ENSRNOG00000057380 ENSRNOT00000081416 3 1 1 81 7 58287351 58287372 GCCAAGCTAAGAATGAATACTG 58 58287411 58287436 TCAAAGTGGACTCAGTATAGAC 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000059603 ENSRNOT00000082534 1 1 1 60 13 58233354 58233375 TACAGAGAAGATTAGCATGGTC 58 58233394 58233414 TATCTTTCTGCTGAAGACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054703 ENSRNOT00000079067 3 1 1 60 3 123956941 123956960 GTTCAATAGCTGAGGTGAGG 58 123956900 123956921 CAGAAGAGTATTCTGAACTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055560 ENSRNOT00000091141 1 1 1 60 1 101122230 101122252 GTCTGTGATGAGCAATAATCACC 60 101122192 101122210 TGGGTTGATCTCACAGTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105628.1 ENSRNOG00000028442 ENSRNOT00000008636 2 1 1 86 3 78697659 78697681 CCCTGCCAATTGATAAATGTG 58 78697728 78697747 CCTCAGAATTCCTGAGAGTG 57 Novel Rattus norvegicus 81 AC105628.1 ENSRNOG00000028442 ENSRNOT00000008636 3 1 1 86 3 78697660 78697682 CCTGCCAATTGATAAATGTGC 59 78697728 78697748 ACCTCAGAATTCCTGAGAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055133 ENSRNOT00000090864 1 1 1 60 1 254313713 254313733 ATGTACATCAGTAGGTGGCAG 60 254313673 254313697 CATACATCAGAATAGACTGTAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059832 ENSRNOT00000082131 3 1 1 60 5 74842247 74842268 ATGAGGCAAAGATTAGCAAGTC 59 74842288 74842307 GGAACATTTCATGAATCCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034753 ENSRNOT00000052876 2 1 1 60 3 51430621 51430641 GAATGTGCCCATTCTAGTCTG 59 51430581 51430600 CAAGTACTAGCTAGGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018062.1 ENSRNOG00000036382 ENSRNOT00000054499 2 1 1 62 15 38054893 38054911 ATCTCTGGGCGAGTATCTC 58 38054936 38054955 GAAGGCTCAGAGGTCTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057648 ENSRNOT00000078829 1 1 1 62 9 120318631 120318655 CAATACAGAGAAGATTATCATGGCC 60 120318674 120318693 GGAATGCTTCCAGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.1 ENSRNOG00000031220 ENSRNOT00000043975 1 1 1 60 5 58184951 58184971 CGTTGTGGTTAAGGACTATGG 59 58184911 58184932 GAAGTACTCCTTGATGACATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054779 ENSRNOT00000083598 1 1 1 60 10 38811719 38811741 TTCCTATTCTCCATGTATGTCCC 60 38811681 38811699 TCTAGCAGGCAAAGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056517 ENSRNOT00000085597 2 1 1 60 10 90220211 90220229 TGGGAACATTCTGGTTGTG 58 90220251 90220271 TGATGAGCTTAAGTCAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.4 ENSRNOG00000058237 ENSRNOT00000084501 1 1 1 80 15 29841113 29841351 TCCAATTAAATTGGGTGAGCAG 59 29841054 29841073 AAGCTATGGATCCCTCTGGA 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053164 ENSRNOT00000077778 3 1 1 64 3 11056809 11056828 TGCTTAGGCATCATGTACTG 58 11056764 11056782 TGTAGTCCTTGCATAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047693.1 ENSRNOG00000036481 ENSRNOT00000054589 1 1 1 60 5 43449227 43449248 CCAATAGAGAAAGATGCACCTG 59 43449269 43449287 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054692 ENSRNOT00000079920 1 1 1 60 7 81043743 81043761 GAGAAGATTAGCATGGCCC 58 81043701 81043719 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.1 ENSRNOG00000051758 ENSRNOT00000087643 3 1 1 66 17 44738865 44738883 AAGAAGACTCGCATCATCC 57 44738913 44738931 GTTTGTTGAGCTCCTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042874.1 ENSRNOG00000055181 ENSRNOT00000085429 2 1 1 60 19 13139774 13139795 CTAGAAGACCAAGATCAAGGTG 58 13139814 13139834 GACACATTGAAAGGCTTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054397 ENSRNOT00000078253 3 1 1 62 6 125593233 125593251 GTGCTTACTTCAGCAGCAC 60 125593276 125593295 ATAAGGGCCATCCTGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059409 ENSRNOT00000082220 3 1 1 60 6 100876911 100876932 ACTCCTTTACAATGTGCATGAG 59 100876872 100876894 ACTGAGCATAGACATAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057737 ENSRNOT00000077194 2 1 1 68 3 175450355 175450373 GGTTTCTCCAGATTGTCGG 58 175450403 175450423 CTGCTACCACAAATTATGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2786.1 ENSRNOG00000051329 ENSRNOT00000076564 3 1 1 98 2 259914260 259914913 AGATGGCACTGAAGATGCA 59 259914973 259914993 TTGTATTGTATGTGGAACGGG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000053664 ENSRNOT00000081363 3 1 1 76 18 83736453 83736471 TTATCCATTGCACTCCGGA 59 83736510 83736529 ACCACAAATTATGCAGTCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.1 ENSRNOG00000053490 ENSRNOT00000071850 3 1 1 175 15 35647010 35647030 AACTTGCAGCCTCTAATACCT 59 35647167 35647188 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 AABR07017781.1 ENSRNOG00000053359 ENSRNOT00000088134 3 1 1 92 15 31010919 31010937 TACTCCTAGGCCTTCACCT 59 31011129 31011149 AGACTGTCAGAGATTGGAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000055727 ENSRNOT00000053449 3 1 1 60 19 54166981 54167001 CCTGATCTTGTATGATCTCGG 58 54167021 54167041 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043983 ENSRNOT00000069250 3 1 1 67 13 73013663 73013682 GCTATACCACCATGAAAGCA 58 73013712 73013730 GAACTAAACAGCCCTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045307.1 ENSRNOG00000046774 ENSRNOT00000071250 1 1 1 80 20 42152139 42152160 AAGAACTCAAGAAGTTAGACCG 58 42152198 42152221 CAGCTGTGAATTTGTTTAGCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060231 ENSRNOT00000077180 2 1 1 60 10 60674310 60674330 ACGAGTACAGAGAAGATTAGC 57 60674270 60674290 CTTCACGAATTATTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019437.1 ENSRNOG00000046145 ENSRNOT00000074661 2 1 1 61 15 105371104 105371125 ATTAGTGAACAAGGGTGAGAGG 60 105371147 105371165 CAAGACTACCAGCCCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057223 ENSRNOT00000087136 3 1 1 60 X 10460295 10460313 CTGGTCCGAAGGTAGTGAC 60 10460332 10460355 GAGTTTAATCTGTAACTGACGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054785 ENSRNOT00000081929 1 1 1 60 1 241292960 241292978 AGCCAATGAGGTTTATCCG 58 241292999 241293020 CCTATGGTACTGGTGTATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045175 ENSRNOT00000070442 3 1 1 60 10 8469924 8469942 ACCACCCTAAATGTACTGC 57 8469965 8469984 GTACTAACTAGGACCCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000052741 ENSRNOT00000087314 1 1 1 82 10 85724722 85724740 TTGCTGATGACCCACTGAG 60 85724658 85724676 AAACAACACAGCATGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056173 ENSRNOT00000077955 3 1 1 60 X 96887839 96887860 GCCATCTACAGGTATAGAAGGT 59 96887800 96887818 ATCTGCCACCTAATGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068650.1 ENSRNOG00000031795 ENSRNOT00000044153 3 1 1 80 9 114004221 114151382 CGTCAAGAGAAGCCAAGGA 60 114004159 114004179 CAAGCCCTGATTCTCTTATGC 59 Novel Rattus norvegicus 81 AABR07064253.1 ENSRNOG00000060718 ENSRNOT00000090441 1 1 1 80 6 71446984 71447006 AGATTTCACCTCACATGCG 58 71446922 71446941 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059639 ENSRNOT00000087755 1 1 1 60 4 40051819 40051837 AGAGACTTTGACAGCCCAG 59 40051777 40051797 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053579 ENSRNOT00000087004 3 1 1 62 15 37261531 37261549 GGCAGCACATACGATAGAG 58 37261487 37261505 CGGATTTGCATGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051622 ENSRNOT00000092156 1 1 1 60 15 4027979 4027999 ACAGACTATTAGAAGGTCCCT 57 4027939 4027958 AATATGCAGCACTTGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053851 ENSRNOT00000084804 3 1 1 60 3 4022485 4022507 GGAACGATACAGAGAAGATTAGC 59 4022447 4022465 CTTTACCGGTTTGCCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 3 1 1 75 6 139660496 139660624 AAAGGTGTCCAGTGTGAGG 60 139660439 139660457 AGAGTTTCAGGGACCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054175 ENSRNOT00000088741 1 1 1 79 X 119599651 119599669 GCTCACTTCAGCAGTACAC 59 119599712 119599730 AACATGTCATCCTTGCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.2 ENSRNOG00000051433 ENSRNOT00000089635 3 1 1 80 4 114777623 114777642 TCAATCTCAAACTGGATCGG 58 114777685 114777867 TCCGTTTCTCTTCACTGTC 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000056319 ENSRNOT00000091286 2 1 1 60 15 108823639 108823658 GCACATATGCTGACATTGGA 59 108823598 108823616 ATGCCATCTTTGCAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.1 ENSRNOG00000053661 ENSRNOT00000082447 3 1 1 80 4 164119586 164119607 GGAATGGATGTAAACAAACCTG 58 164115966 164119547 GAAGGAACTTCAGTTCATCCT 58 Novel Rattus norvegicus 81 AABR07054027.1 ENSRNOG00000047995 ENSRNOT00000070910 3 1 1 61 3 137018721 137018739 CTGTGTAGCCCTAGCTGTC 60 137018763 137018782 TCTCTGAGTTTAAGGCCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054456.3 ENSRNOG00000049208 ENSRNOT00000074770 1 1 1 60 3 154234817 154234838 CCCTCTGTTGTTATACTCTGAC 58 154234778 154234796 CAGTTTCCAGGTTGTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055610 ENSRNOT00000083790 1 1 1 60 4 179966434 179966454 GGAATCTGACTGTGAGATCTG 58 179966474 179966494 GCCAGATCAGCTGAATTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061875 ENSRNOT00000086457 3 1 1 60 5 48749445 48749465 CCTGAAGCTAAGTATGTGGTC 58 48749405 48749423 TTGGTCTAAGAACCGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056053 ENSRNOT00000091700 2 1 1 60 18 84431218 84431237 CCTTGTGCTTTAGTAGGTGG 58 84431259 84431278 TAGGTCAGAACATTGAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000055018 ENSRNOT00000090806 1 1 1 60 5 38932349 38932369 GAAGGGTAAAGGAAGTCTCCA 59 38932309 38932329 AGGATCTAAAGAGGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051312.1 ENSRNOG00000059508 ENSRNOT00000092147 3 1 1 60 3 4773238 4773260 GTTTACCTGTCTATGAGATGGGA 60 4773274 4773298 TAGTTAATCCTGCCTAAGAGATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055844 ENSRNOT00000077674 3 1 1 60 7 73212517 73212536 TGACAGAATTTGAGCTTGCT 58 73212476 73212499 CATGAGGAAGAGAACACTATAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051947.1 ENSRNOG00000039025 ENSRNOT00000059678 3 1 1 78 3 29861370 29861389 ATGACGTTGATCATTTGGGC 59 29861311 29861332 CCCATCTCACAATTAATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056465 ENSRNOT00000090479 2 1 1 60 X 71346543 71346562 ACCAAAGAATCTGTCTGGTG 58 71346502 71346521 TCATTTCTCTTTAGCTGCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059332 ENSRNOT00000082558 1 1 1 60 9 112101926 112101944 GAGAAGATTAGCATGGCCC 58 112101968 112101986 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000059814 ENSRNOT00000078280 3 1 1 60 X 62313156 62313177 GCCCTTATTAAAGCTGTAGCTG 60 62313197 62313216 ACTTGGGACTTGTGTTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056905 ENSRNOT00000083588 1 1 1 64 X 33478087 33478105 TACATTTCCCAGGGCAAGG 60 33478041 33478059 CGAGTTTCCTGCATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000051558 ENSRNOT00000085113 3 1 1 60 3 154973558 154973576 AGTCAATCCCAGTTGGTGG 60 154973599 154973618 AAGTGCAGTAGTGAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032453.1 ENSRNOG00000038592 ENSRNOT00000058869 2 1 1 60 18 66103940 66103958 AACCTTCCACCATCTTCGT 59 66103898 66103920 CATCTTCTTTAAGACAAGGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094421.1 ENSRNOG00000017586 ENSRNOT00000023626 3 1 1 60 10 14533243 14533263 AATGGTCGGAAACACAAAGAG 59 14533203 14533224 CCTGTTCTTCCATCCATTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060772 ENSRNOT00000080196 1 1 1 60 4 116931012 116931033 CTATGTCACATGTTCATCATGG 57 116931053 116931072 GTGCTTAGCTTGGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000051715 ENSRNOT00000089757 1 1 1 60 18 63622299 63622320 ATCTAGTCTGCTTAGCTCTGTG 60 63622260 63622278 GCATTACTATTGCCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050489 ENSRNOT00000073598 3 1 1 83 6 142533976 142534077 AGTAACTGCAGGTGTCCAC 60 142533911 142533929 GACAACTTCACTGAAGCCC 59 Novel Rattus norvegicus 81 U11 ENSRNOG00000059869 ENSRNOT00000086455 1 1 1 60 6 108403978 108403997 ATCAAGAGATTTCGGAAGCA 57 108404020 108404038 CAGGACCAATGATCACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045187 ENSRNOT00000070454 3 1 1 60 X 119875339 119875360 TGAATGTACCCAATCATGTCTG 59 119875300 119875323 TAATACTAACCAGGACTGACTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055590 ENSRNOT00000084475 2 1 1 61 10 74738925 74738943 GCTTATCCATTGCACTCCG 59 74738968 74738986 TCAAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0427.1 ENSRNOG00000057689 ENSRNOT00000084857 3 1 1 60 1 41325007 41325025 AGTTCAGGGAAGATAGCGG 59 41325047 41325067 AGGCACTTATAGGAACATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056700 ENSRNOT00000085942 3 1 1 60 15 1722756 1722775 AGAGAAGATTAGCATGGCCC 60 1722798 1722816 ATATGGAACGCTTCACGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053921 ENSRNOT00000084007 2 1 1 61 7 37021930 37021948 TATGCTCAGTGTTCGGACC 60 37021973 37021991 GTCTTAGGCTCACTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034736.1 ENSRNOG00000053527 ENSRNOT00000084433 1 1 1 60 11 85992900 85992918 ACAGCCACTCTCACAATCC 60 85992939 85992960 AGTGACAGTAATAATCAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061503 ENSRNOT00000088341 2 1 1 60 5 70530938 70530959 GTATCCGTTACCTCACTAACTG 58 70530899 70530917 GGAAAGGGATACTTGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000054099 ENSRNOT00000086077 3 1 1 76 20 45346661 45346679 ATTCCTACAGTGCTTGCCA 59 45346603 45346624 TCTATAACCTTGCTCTGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061825.1 ENSRNOG00000059964 ENSRNOT00000078967 1 1 1 80 4 147918485 147918504 AAACCAAATGCTCTTGTCGA 59 147918423 147918445 CATTCAAGATCCCATCTACTGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057640 ENSRNOT00000077160 1 1 1 60 5 43674579 43674600 ATACAGAGAAGATTAGCATGGC 58 43674616 43674639 GGAACTAGGAAAGTGAATACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061550 ENSRNOT00000077400 3 1 1 60 20 29265856 29265875 TCAGTGAGTGCAAAGAGGAG 60 29265815 29265839 GATGTTCATAGATCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057206 ENSRNOT00000077209 2 1 1 60 5 93420357 93420379 GGGATGATACAGAGATTAACACG 59 93420399 93420417 AGGCTTCTCAAATTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0647.2 ENSRNOG00000051221 ENSRNOT00000076201 1 1 1 80 8 64852295 64852315 CTATGAGTACGTGATCATGGG 58 64844477 64852253 CCATTGAAAGGTTCTCCCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058374 ENSRNOT00000086059 3 1 1 60 15 19834001 19834022 CTAACATTGGAACAACACAGAG 58 19834043 19834061 ATTTGCGTGTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD93 ENSRNOG00000047430 ENSRNOT00000063262 1 1 1 60 4 7969291 7969310 AGGATGAGGACTCTAACCTG 58 7969330 7969351 CTCAGGTAAATCCTTTAACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044990 ENSRNOT00000070257 1 1 1 60 15 57342184 57342202 ACCACCCTGAACACATCTG 60 57342225 57342244 TCTAGATATCCATCAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057947 ENSRNOT00000081680 1 1 1 60 15 7715581 7715599 TGTGTCATTAGGTGCACAG 58 7715539 7715557 CATAGGTCAGGACACTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035243 ENSRNOT00000053366 2 1 1 60 11 83746281 83746300 TCTCGTCTGATATCGGAAGC 59 83746318 83746341 TATTCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055587 ENSRNOT00000090311 2 1 1 60 15 7954190 7954209 CATCAATGTGGTGACCTCCT 60 7954232 7954250 CCAGTTCACCCTCCTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049202 ENSRNOT00000073244 1 1 1 60 7 115470682 115470700 GTCTACAGCGATACCACAC 58 115470640 115470662 CTCTGTTTAGCTTGTGAGATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055706 ENSRNOT00000088902 1 1 1 60 20 13547812 13547835 GGCTAAGATCAAGTGTAGTATCTG 59 13547853 13547872 GATATTGCCGCCATAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054701 ENSRNOT00000079728 1 1 1 60 19 45819004 45819023 AGATGGTTGTCATGCAACTG 59 45819046 45819064 CATGTCTGGAAAGCAATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053612 ENSRNOT00000081975 3 1 1 68 20 50371770 50371789 TAGTGGCTATGCTTATGGGA 58 50371820 50371838 AAAGACACGGAACAACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030425.1 ENSRNOG00000056057 ENSRNOT00000088101 2 1 1 60 10 85130300 85130321 GACAAAGCAAATGTCTTCAAGG 59 85130339 85130360 AGTAATGCAGCTTGACATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002001.1 ENSRNOG00000058538 ENSRNOT00000078512 3 1 1 80 1 63966506 63966525 GGCTGTTACTGTTACAGCTC 59 63966565 63966712 GTAGTTGTACATTCCTGTCACC 59 Novel Rattus norvegicus 81 AABR07055788.1 ENSRNOG00000056930 ENSRNOT00000087352 1 1 1 60 7 10062699 10062718 CCTTTCCTCTACCATAAGCC 58 10062658 10062678 GTCCAGTTCATTCCCAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041708 ENSRNOT00000063461 3 1 1 60 7 77652786 77652804 GGACACTAAGCAGGGTCAG 60 77652826 77652846 TACATAGTGGGACTCTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U8 ENSRNOG00000056260 ENSRNOT00000086705 1 1 1 60 7 2765393 2765412 GACAGAACATGACAACAGGT 58 2765435 2765453 CCAGGGTGTTGCATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U8 ENSRNOG00000056260 ENSRNOT00000086705 2 1 1 60 7 2765393 2765413 GACAGAACATGACAACAGGTG 60 2765435 2765453 CCAGGGTGTTGCATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056152 ENSRNOT00000083734 2 1 1 60 19 51369786 51369804 TCACATGTGCATCTGTAGG 57 51369827 51369846 TTAGAACATGGAGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032348.1 ENSRNOG00000049472 ENSRNOT00000075782 2 1 1 61 18 62248654 62248672 CCTTGACCTCAGAGATCCA 58 62248697 62248715 TAGAGCACGCCTTTAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115670.2 ENSRNOG00000060002 ENSRNOT00000077475 3 1 1 60 17 45745788 45745808 CAGAGAACAGAAGGTGATGAG 58 45745748 45745772 GGCTTAGATCTATGTCATTTACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061235 ENSRNOT00000086652 3 1 1 61 5 455972 455994 GCAAGGGTATATGAGTAGTTGTG 59 455933 455954 TTGACCTTGATAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000056003 ENSRNOT00000087539 1 1 1 90 19 10832364 10832382 CTCTCATGATGGGAGCTGG 60 10832435 10832454 TTATCCCTAGTTCCCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057257 ENSRNOT00000082074 3 1 1 60 4 53658042 53658062 ATACTGTGAGCAGAGAAATGG 58 53658002 53658023 CACATCTCACATGCAATAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052242 ENSRNOT00000080776 3 1 1 60 18 60869549 60869568 GATTTATGGCAGGCTCATCC 59 60869590 60869609 CACAGTTTGCTCTAGCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053345 ENSRNOT00000083506 2 1 1 60 7 36699361 36699385 CATTAAGGATATGTGAGTGACTGTG 60 36699399 36699421 CTCTTGAGAACTTATTTGGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060081 ENSRNOT00000091838 2 1 1 60 4 98821586 98821606 GCGGTGGTGTTCTTATATCAG 59 98821546 98821566 GCTAGTGTGAACAAAGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060081 ENSRNOT00000091838 3 1 1 60 4 98821605 98821623 AAAGAGACACCTTGTTGGC 58 98821563 98821581 ACTGCCATCTATTCTGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045356 ENSRNOT00000070623 2 1 1 60 11 64849033 64849052 CACGAAATGTGCCTGAACTC 60 64849072 64849093 ACACAAGTACTAACCAGAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051557 ENSRNOT00000091947 1 1 1 80 19 61811008 61811026 TGAGGTTTATCCGAGGTGC 60 61810946 61810966 GCTAAGTACTCCTGAACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031784.1 ENSRNOG00000061202 ENSRNOT00000086315 2 1 1 71 18 34661552 34661570 GATGCTGATTCAGGCAGTC 59 34661499 34661517 ATTAGCATCACCTGGGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007592.1 ENSRNOG00000051732 ENSRNOT00000082468 2 1 1 107 2 20724291 20724310 GGGCTGATGAGCATTTACTG 59 20724199 20724224 CCAAATGCATGTTTATGTGCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055216 ENSRNOT00000079125 1 1 1 61 3 163463274 163463292 GAGAAGATTAGCATGGCCC 58 163463316 163463335 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044715 ENSRNOT00000069982 3 1 1 60 18 64976410 64976430 GCATGTACCTGATTCTGTCTG 59 64976370 64976389 TAAGAACTAACCAGGCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055273 ENSRNOT00000083391 3 1 1 80 7 49260804 49260822 TTTAGAGGCATTGCAGGTG 58 49260866 49260884 AGAACATAGGCGTAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052483 ENSRNOT00000077905 2 1 1 60 5 128800431 128800451 AGCCCTAGATGATCTTGTCTG 59 128800391 128800410 GTTACTCATACACCCTGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051399.1 ENSRNOG00000055886 ENSRNOT00000082845 1 1 1 80 3 9185829 9185847 CTCTGCTTCAGACTTGCTG 59 9185890 9185911 GTTCTCTGTGTCCTTGTGAG 58 Novel Rattus norvegicus 81 AC095267.3 ENSRNOG00000060839 ENSRNOT00000083949 2 1 1 95 X 156228621 156228811 ATAGTATCCTGGCCGTTAGG 59 156228869 156228887 TTCTCATCACCAGGGAGAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000053169 ENSRNOT00000088964 3 1 1 60 11 55662757 55662776 ACAGAGAAGTTTAGCATGGC 58 55662799 55662817 ATGGAATGTTTCCGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000052780 ENSRNOT00000088231 3 1 1 60 20 41767472 41767492 AACCAATTCAGGCTATTTGGC 60 41767513 41767532 AGTGGTATAGTCCACTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051453 ENSRNOT00000086025 1 1 1 60 11 23264324 23264344 GCCAATGAGGTTTATCCAAGG 59 23264366 23264384 TCTCGGGATGTTCCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051453 ENSRNOT00000086025 2 1 1 61 11 23264328 23264346 ATGAGGTTTATCCAAGGCG 58 23264371 23264389 CTAGCTCTCGGGATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068636.1 ENSRNOG00000047678 ENSRNOT00000054647 2 1 1 70 9 113746690 113746708 AGGGCTACAATAGGTGTGC 60 113746742 113746760 GTCATGCTTGAGAGTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051886 ENSRNOT00000079281 2 1 1 60 5 82805201 82805223 GATACAGAGAAGATTAGCATGGG 59 82805243 82805261 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052826 ENSRNOT00000077203 1 1 1 60 5 8730020 8730041 TGGTCATTAGACTGATATGGCT 59 8729981 8729999 CTTGGAACTGTGAGGAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047194.2 ENSRNOG00000060784 ENSRNOT00000086280 3 1 1 64 5 23358402 23358422 ATGGACTAGAAATCCATTGGG 58 23358448 23358466 TTCTCTTACCGTAGTCGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029863.3 ENSRNOG00000058245 ENSRNOT00000077451 3 1 1 92 10 56530633 56530652 AGGCATATGTTAGTGCTCCC 60 56529665 56530578 CGATTCCAAATCTGGCTGG 59 Novel Rattus norvegicus 81 AC127076.1 ENSRNOG00000052036 ENSRNOT00000078099 3 1 1 93 5 4927456 4927477 ATGATGGAGGACTTTAAGAAGG 58 4927360 4927403 CCTGTAGTTCTTTAAGGGCT 57 Novel Rattus norvegicus 81 ENSRNOG00000039674 ENSRNOT00000012267 1 1 1 60 11 82813883 82813903 CAACCATTCAAGGAAACAGAC 58 82813923 82813943 CAATCGTATCTTCATCCTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052655 ENSRNOT00000084876 3 1 1 60 4 101119531 101119551 GCACGATTCTTGCTAATTGAC 58 101119491 101119512 TCATTGTGTCCCATAAGTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034404.1 ENSRNOG00000041444 ENSRNOT00000063197 1 1 1 66 11 68586074 68586097 GACATTGGAAGAAGGAAGATTCTC 60 68586031 68586049 TCTAGCAGTTGCTCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061617 ENSRNOT00000085685 2 1 1 60 4 86847301 86847324 GAGAGGCTATGTCTAAATGTTCAG 59 86847264 86847285 GGGCTACTAATCATTCAGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056681 ENSRNOT00000091438 1 1 1 71 6 101253230 101253248 ATTGTAAGTGTGGCTGCTG 59 101253282 101253301 CATAGGTCAGAACACCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061016 ENSRNOT00000086071 3 1 1 60 6 59446045 59446069 ATGTATATCATTAGGTGACCGAGAG 60 59446081 59446105 GATGCTTACAGATTAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054738 ENSRNOT00000079597 2 1 1 60 4 176450599 176450618 CATAAGGAGGAAGGTCATGG 58 176450558 176450579 AGGTTCTAACAGGAGAGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066096.1 ENSRNOG00000045962 ENSRNOT00000070833 3 1 1 69 9 2135874 2135892 TGAAATCCAGCTGTAAGGC 58 2135823 2135841 ATGGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057077 ENSRNOT00000080359 1 1 1 60 10 70489632 70489651 GAGTTGGAATAGGAGCTTGC 59 70489674 70489692 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136847.1 ENSRNOG00000046430 ENSRNOT00000074835 1 1 1 60 11 71469344 71469362 GTGTAGTCCTGGCTATCCT 58 71469386 71469404 ATCTCTGAGTTCAAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064386.1 ENSRNOG00000058950 ENSRNOT00000078189 1 1 1 60 6 78586440 78586461 GAGAACATGCATTAACATCAGG 58 78586401 78586421 ATAAACTGACCTGGATCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061106 ENSRNOT00000078901 1 1 1 60 9 79578128 79578147 GAGTTGGAATAGGAGCTTGC 59 79578170 79578188 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027283.1 ENSRNOG00000058495 ENSRNOT00000080977 1 1 1 80 17 22811476 22811494 AATTGTCTGCATACTGCGT 58 22811410 22811433 GAATTGACTTGATGTGGCAG 58 Novel Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076396,ENSRNOT00000085052,ENSRNOT00000088581 1 3 6 60 10 74882539 74882558 CTGCCTGTACTTCATCTCAC 58 74882691 74882712 CATGAATTCAACATCCAATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076078 1 1 6 80 10 74861918 74876949 TGGCTGAAAGATCAAGCAC 59 74876992 74877011 CTTCCTGGGAAATCCTTCAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000055628 ENSRNOT00000090915 1 1 1 60 9 15916204 15916223 AGAGAAGATTGCATGATCCC 58 15916246 15916264 AATATGGAACGCCTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058826.1 ENSRNOG00000036515 ENSRNOT00000054622 1 1 1 63 7 138683289 138683310 CGTATTTAAGAAAGCATCCTCC 57 138683334 138683352 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052939 ENSRNOT00000084284 1 1 1 60 4 143430800 143430820 CTGATGTAGCTCACTAGACAC 58 143430840 143430860 TTCAGGAGAAATTCCGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052171 ENSRNOT00000079301 1 1 1 74 6 137908013 137908031 ATGAGGTTTATCCGAGGCG 60 137907957 137907975 GTTCCTTTGTTGTGGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119496.1 ENSRNOG00000053856 ENSRNOT00000088629 3 1 1 60 17 21644195 21644215 GTCTTTCTGACTATGTGCAGC 59 21644236 21644255 GGACAGTCTCGTCTACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054642 ENSRNOT00000078054 3 1 1 60 17 81859235 81859255 AGTGTAGTATGTGCATCTGTG 58 81859277 81859295 TCTGAAGTCTTCAGCTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014289.1 ENSRNOG00000058935 ENSRNOT00000089496 1 1 1 105 14 7500424 7500444 CTACAGATTCAATGCAATCCC 57 7500513 7500531 AGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027810.1 ENSRNOG00000036339 ENSRNOT00000054460 3 1 1 65 17 44708740 44708758 GGTGCATGGAGTTGAATGG 59 44708693 44708711 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052729.1 ENSRNOG00000058982 ENSRNOT00000078440 3 1 1 80 3 71012447 71012768 GAAGGAAGAAATGAGCAGAGG 59 71012387 71012407 GTACAAATCAGCGTGTAACCA 59 Novel Rattus norvegicus 81 U3 ENSRNOG00000060466 ENSRNOT00000083723 3 1 1 61 10 74778225 74778249 TACTAGAGAAGTTTCTCTGACTGTG 60 74778268 74778286 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061880 ENSRNOT00000091955 1 1 1 60 4 88966735 88966758 GATACAGAGAAGATTAGTATGGCC 59 88966776 88966795 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014304.1 ENSRNOG00000057639 ENSRNOT00000084419 3 1 1 81 14 8598792 8598813 CCTCAAGGTACACAGAACC 58 8598729 8598747 CACAACTGGCACAATTCTC 57 Novel Rattus norvegicus 81 AABR07067805.1 ENSRNOG00000021406 ENSRNOT00000029708 3 1 1 60 9 64704297 64704316 TCATTGACCCAGGTGATTCC 60 64704256 64704276 TACTTCTCACCAGTCTGTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057900 ENSRNOT00000081093 3 1 1 60 7 93868664 93868683 CACGAGGCAGGAAATATACC 58 93868704 93868724 GTGTAATGGGTAAGACACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064999.1 ENSRNOG00000038335 ENSRNOT00000058373 2 1 1 60 6 103823920 103823940 AGTTTGGTAGGAACAATTGGG 59 103823962 103823980 CTTTGTCATTGGCTCGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000060638 ENSRNOT00000081633 3 1 1 60 7 121202510 121202529 ACATGCTACAGTGATGAAGG 58 121202548 121202570 ACTACTCAACCTCTACTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0708.2 ENSRNOG00000051234 ENSRNOT00000076263 3 1 1 166 10 71158763 71159487 CTTCTGGGTTTCAGGTCTG 58 71158615 71158634 GATCTAAGCAGAGCCTTTCC 58 Novel Rattus norvegicus 81 Mrps6 ENSRNOG00000059381 ENSRNOT00000087452 1 1 1 88 11 32253015 32263520 CGAGGAGGGTATTTCTTGGT 59 32263571 32263589 ACCACATCAGTGTCTCGTG 60 Novel Rattus norvegicus 81 ENSRNOG00000054319 ENSRNOT00000077706 2 1 1 88 14 80678613 80679553 CTTCTCATCTGCTGAGACAC 58 80678544 80678562 ACTTCCAGTTCAGGCTCTC 59 Novel Rattus norvegicus 81 AC113635.2 ENSRNOG00000056335 ENSRNOT00000081214 3 1 1 61 2 209834768 209834786 CACGGAAGACAAATTGGGC 60 209834811 209834830 ACTCTAGCTGCTTCTAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC142458.1 ENSRNOG00000054641 ENSRNOT00000089872 2 1 1 78 8 79690914 79690934 TAACCTATCTGAACACTGCAG 58 79690855 79690876 GTTGAAGTAATATCCCTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100910814 ENSRNOG00000030477 ENSRNOT00000042020 2 1 1 204 10 87788837 87788855 CCAGGTGCTGTATCTCCAG 60 87789023 87789041 CTAGATCCACAGCCTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052439 ENSRNOT00000083758 2 1 1 60 8 128807761 128807779 ACAACGTTGGAGATGAAGC 59 128807798 128807821 CTGAGAAGTTGTAGGAATATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050347 ENSRNOT00000073923 3 1 1 80 10 89337799 89337930 CAAAGTGAACTCCAAGGACTC 59 89337739 89337758 ACCTTCTCCTTCCATTTCCT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054837 ENSRNOT00000087077 3 1 1 61 8 94377982 94378000 GTGTCAGTAGGTGGCTGAG 60 94378023 94378043 GTTTACAGGTCAGAACACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015639.1 ENSRNOG00000060489 ENSRNOT00000074568 1 1 1 80 14 68170063 68170285 GACCACAGAAATAGCAGAACG 59 68170003 68170021 TTTCTGTTGCTTCGGTTCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059194 ENSRNOT00000090683 3 1 1 60 8 40302972 40302994 AGACAGAATGGTAGACTAAGGAG 59 40302934 40302953 TTCAATTTCAGGTCCTTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055263 ENSRNOT00000086325 1 1 1 60 8 76954018 76954040 CTGAGAGTCAGAATGATACAGAG 58 76954057 76954078 ATTTGAGTGTCATCCTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058213 ENSRNOT00000079343 1 1 1 60 8 49369026 49369044 CTGCAGCTGTCCTTATGGT 60 49368984 49369005 TGTGTAACAGTTTCTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036336.1 ENSRNOG00000056739 ENSRNOT00000077521 1 1 1 107 12 39021388 39021413 TTGCTTTCCTTATGTCTAGGG 58 39021299 39021318 CGCTAATTTCTTTCTGAGCC 57 Novel Rattus norvegicus 81 Rn60_20_0051.7 ENSRNOG00000053095 ENSRNOT00000079690 3 1 1 94 20 5049630 5049650 CTCCCATCTTCATCAACTCTC 58 5049705 5050563 TTTACTTCACTTGTCAGCGG 59 Novel InUTR Rattus norvegicus 81 AC123358.1 ENSRNOG00000025626 ENSRNOT00000032928 3 1 1 66 12 50304023 50304041 CACAAACAGCTCCACAACC 60 50304070 50304092 CACTTAGGATTGGCTTTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054384 ENSRNOT00000082178 2 1 1 60 8 55307070 55307091 GTTCCTAACACTGGAACAACAC 60 55307109 55307130 TTGCATGGCATAATTATGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0892.1 ENSRNOG00000053448 ENSRNOT00000077603 2 1 1 80 10 89245886 89246494 CAATGTGATTCTCAATCCAGGT 59 89246534 89246553 CCAAAGGTAAACGTCCAGAG 59 Novel Rattus norvegicus 81 AC125873.2 ENSRNOG00000060487 ENSRNOT00000077559 1 1 1 60 13 109909847 109909865 GTCGTTTGCCATGTCACAG 60 109909889 109909907 CACATGAAACCTGAGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054449 ENSRNOT00000078587 2 1 1 60 13 28228963 28228983 GGTGGTAAAGAGGAGAAAGAC 58 28229003 28229023 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038019.1 ENSRNOG00000004319 ENSRNOT00000005702 2 1 1 60 X 37261865 37261887 GATAGCTGCTTATGCCTATAGTG 59 37261907 37261925 CAGCTCTTCTTTCGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057805 ENSRNOT00000090300 1 1 1 60 8 132251916 132251934 TTGCATGTGCATCAGTAGG 58 132251957 132251976 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054897 ENSRNOT00000089600 1 1 1 60 8 97413365 97413386 GATGATCTGTCTGTGACATCTG 59 97413406 97413425 TCAGATCATCGGCATCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690903 ENSRNOG00000057926 ENSRNOT00000080612 3 1 1 62 X 130794633 130794651 GACCGAAAGTGAACGTCTC 59 130794589 130794611 CCCTCATTTGATTTCTGAAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130555.1 ENSRNOG00000051506 ENSRNOT00000083931 1 1 1 60 8 22529856 22529874 GACTGAATAGCCAACCCTG 58 22529814 22529833 GTACATGTCTTGGTCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029931.1 ENSRNOG00000058040 ENSRNOT00000090113 1 1 1 80 10 60455505 60455529 GCAGCAAAGATTGGTTTGTG 59 60455572 60455590 GAGCAGGCCAACTTTAGGA 60 Novel Rattus norvegicus 81 AC105804.1 ENSRNOG00000053768 ENSRNOT00000088038 1 1 1 86 12 47277109 47277131 TCATCCCTAATTTGCTACACTG 58 47277179 47277197 GTGCAGTTGTAAGCTGTGG 60 Novel DesignRelaxed Rattus norvegicus 81 5S_rRNA ENSRNOG00000034938 ENSRNOT00000053061 1 1 1 63 8 114124509 114124527 CTAAGCAGGGTCAGACCTG 60 114124464 114124482 TACAGTGCCTGGTATTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056584 ENSRNOT00000084606 3 1 1 62 8 102277764 102277782 GATTAGCATGGTCCCTGAG 57 102277808 102277826 AATTCAGGGCACACTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004269.3 ENSRNOG00000058004 ENSRNOT00000083062 2 1 1 227 1 135084243 135084261 CCATACCAGATCCCAGCTG 60 135084033 135084051 CTCCTAGGTGTAAGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071208.2 ENSRNOG00000060605 ENSRNOT00000085081 1 1 1 101 8 104655736 104655756 TCCAAATACAACCTCAGAGGG 60 104655650 104655672 AGAAGCCTGATCACCATCC 59 Novel Rattus norvegicus 81 ENSRNOG00000032310 ENSRNOT00000044428 3 1 1 72 1 129227883 129227903 ATTATGCCAGGATTCATGTGG 59 129227816 129227837 AGTTCTTACCCTCCAATTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070851.1 ENSRNOG00000052238 ENSRNOT00000077273 3 1 1 60 8 87443952 87443972 AGATTAGGGTCAGTGAGTCTG 59 87443994 87444012 GGTCACCAAGTTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060943 ENSRNOT00000079220 3 1 1 64 8 99954042 99954060 CAGTAGATGGCAGTGAGGG 60 99953996 99954014 TTCTGATGTTCACAGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008319.1 ENSRNOG00000056627 ENSRNOT00000080851 3 1 1 86 2 52855840 52871471 TCCAATGGGTTGAGAGCTG 60 52871520 52871539 CACTCTGGAAGACCTCAGTG 60 Novel Rattus norvegicus 81 AABR07071819.1 ENSRNOG00000041639 ENSRNOT00000063392 3 1 1 60 8 132768305 132768327 GGACATTAGAAGAAGGAAGACTC 58 132768347 132768365 GTTACTCAGTCCCACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000058779 ENSRNOT00000079614 1 1 1 64 8 96302132 96302152 GATGATCCTATCCCGAATCTG 58 96302088 96302106 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000058283 ENSRNOT00000080998 2 1 1 60 8 128807095 128807116 CTGCACACTATTAAAGCTCAGG 60 128807137 128807155 CCGACACTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341,ENSRNOT00000084699 3 2 4 107 20 4427867 4427885 GCTACTTACCTGGAGAGCC 59 4427340 4427796 CTTGAAGAATGGTGCCTGC 60 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000090814,ENSRNOT00000091341 1 2 4 60 20 4427218 4427236 TTCAGCCCTAAACTTGCCT 59 4427176 4427196 CACCTCTTGATTCTGCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044520.1 ENSRNOG00000060173 ENSRNOT00000088409 2 1 1 60 20 9173173 9173191 ATTGCCTTCTCCATTCCCA 59 9173215 9173233 AGTCCATGTGAACTCACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045632.1 ENSRNOG00000031969 ENSRNOT00000041101 3 1 1 103 20 54072035 54072058 GGAATTACCTTCAGAATTACAGGG 59 54072120 54072139 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC132752.1 ENSRNOG00000056187 ENSRNOT00000090015 1 1 1 100 20 47779809 47779828 ATGCAGAAATACATGCACAC 57 47779890 47779909 GTGCATGTATGTGGTATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 1 1 1 71 20 896890 896914 TCTGCTATACCACTTCTACCC 59 896946 896965 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 1 1 1 71 20 628727 628751 TCTGCTATACCACTTCTACCC 59 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000061067 ENSRNOT00000092135 2 1 1 60 3 161229463 161229481 CTGGTCAGAGGTACACAGG 59 161229503 161229523 TGTCTGAGAGCTTATTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024825.1 ENSRNOG00000048427 ENSRNOT00000071397 3 1 1 60 16 18380519 18380538 AACCTTGTTGCTGAAATCCT 58 18380478 18380498 CTGCCTCATCCTTAACTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD17 ENSRNOG00000052573 ENSRNOT00000077591 3 1 1 60 3 138393263 138393285 TACTGGTAAGAATGGCTAGTGTC 60 138393225 138393243 TTGGTGAGATGGAACCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045809 ENSRNOT00000071208 3 1 1 67 16 4974790 4974813 CCTGAACATATCCAATCTCATCTG 59 4974746 4974764 CATCCAAATGCTAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000051755 ENSRNOT00000079071 1 1 1 60 16 62218598 62218617 AAAGTGAGGCTGATTGAGCT 60 62218639 62218658 GGAAGAGAACATGCGATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 1 1 1 78 18 7118600 7118784 AAGACAACACTGGGTCAGG 60 7118826 7118844 TCTCCTGATCGCGAATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07046732.2 ENSRNOG00000058355 ENSRNOT00000086510 1 1 1 80 5 3951336 3953345 AGAACTGGAGTATCTATCTGCT 58 3953386 3953404 TTCTTTCCTGTTCAGCTGC 58 Novel Rattus norvegicus 81 AABR07046732.2 ENSRNOG00000058355 ENSRNOT00000086510 3 1 1 83 5 3951336 3953345 AGAACTGGAGTATCTATCTGCT 58 3953388 3953407 AGTTTCTTTCCTGTTCAGCT 57 Novel Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000080427 3 1 2 80 14 36590954 36590974 CTACCAATGCCCATATTGTCC 59 36590453 36590914 AGATTCTTGACCCAGTAGAGG 59 Novel Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 1 1 1 64 6 2660339 2660932 CTTCACTCCTGCAATGAGC 59 2660293 2660313 CATCACTGCAAGATTTCTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015040.1 ENSRNOG00000056778 ENSRNOT00000084119 1 1 1 60 14 46286646 46286664 AGGACTCACAAACAACCGA 59 46286794 46286812 GATCTTCAGAAACGACGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 2 1 1 76 5 17113874 17123497 TTACATCGCAGTGACAAGTG 59 17113817 17113835 CAATACTTGGCACACCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029636.1 ENSRNOG00000055095 ENSRNOT00000089646 2 1 1 90 10 42173145 42182597 CCAACTATCCAGAGACCCA 58 42173073 42173093 GAAATGGGTTGTTTCTCACTC 58 Novel Rattus norvegicus 81 AABR07047062.1 ENSRNOG00000056516 ENSRNOT00000089701 1 1 1 80 5 17912033 17917049 ATGGAGAGCTATCAAGATCCAG 59 17917087 17917108 CCTCTGATGTTGAAGATATGGC 59 Novel Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000081555 3 1 2 111 4 86833058 86833076 AAGAAATGTAGGAGCGCCA 59 86699589 86737138 ACTTAGATCGGGAGAAGCG 59 Novel Rattus norvegicus 81 AABR07060726.1 ENSRNOG00000054748 ENSRNOT00000080723 2 1 1 80 4 91179220 91179862 ACTTCAGGATGCCTTGAGG 59 91179158 91179178 ATTTGAAGGAAACAGTGGCTC 59 Novel Rattus norvegicus 81 AABR07029895.1 ENSRNOG00000055441 ENSRNOT00000090175 2 1 1 60 10 57952034 57952052 TCGCGTTAAAGTCCAAGTC 58 57929746 57929766 CTTAAATCATCTCTGCCGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 1 1 1 60 5 36435102 36435122 TGGATCCTCTACAACTGTGAG 59 36434047 36435083 TTCTGAGATTGCTGAAGATCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015812.2 ENSRNOG00000054484 ENSRNOT00000084239 3 1 1 73 14 78398034 78398053 CATGTGATATCAGAGTCGGG 58 78393224 78393243 TTCAAGAGAAGCCTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 2 1 1 66 14 82288693 82289269 GTGTAAAGTCCCTCGAGTC 57 82288645 82288663 GATACCTGAGGTCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030386.2 ENSRNOG00000055324 ENSRNOT00000079877 1 1 1 61 10 83617757 83617775 CAGGGATTCTCGTAAGGGT 59 83604531 83604549 CTCAATTTCCAGACGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 3 3 3 81 1 19639626 19639644 CACCTGAGTGAAGTCCCAG 60 19639399 19639583 CTGGAGTGTACCTCATAGAGG 59 Novel Rattus norvegicus 81 AABR07048321.1 ENSRNOG00000057406 ENSRNOT00000081275 2 1 1 81 5 72892382 72892400 CCATTTCAGACTCCTGGGT 59 72892445 72929271 ATAAGGTCCCAGGACATCG 59 Novel Rattus norvegicus 81 AABR07016056.2 ENSRNOG00000060971 ENSRNOT00000084512 2 1 1 61 14 92967860 92967878 TGGAATGCTTTGAAGCAGG 59 92961100 92961118 AAGGTGTCCTTCCGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048322.1 ENSRNOG00000059020 ENSRNOT00000081402 2 1 1 80 5 73297556 73326542 CAGACAATGGAGATGCCTG 58 73297494 73297514 ACCTGATCTCTTTCTTTGCAG 58 Novel Rattus norvegicus 81 AC117122.1 ENSRNOG00000053986 ENSRNOT00000081751 2 1 1 154 4 120882754 120882772 GTTTCAGCTCACTCTGCAC 59 120918187 120918205 GAGGATCTTCAGTTCTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030498.1 ENSRNOG00000059149 ENSRNOT00000086815 3 1 1 84 10 90701364 90709252 GCTTAGTGACAACAGCTTGG 60 90701299 90701317 TCTCCTCACGATCCTCTCC 60 Novel Rattus norvegicus 81 AC127189.1 ENSRNOG00000053913 ENSRNOT00000083359 3 1 1 87 1 21704521 21704618 TCAGGATTAATGGGATCCGC 60 21704453 21704471 AAACAACTGCCACAGTGTG 59 Novel Rattus norvegicus 81 AABR07030501.1 ENSRNOG00000055811 ENSRNOT00000078597 3 1 1 93 10 90771263 90771985 TTTGTCTGCCCTTCCTCTC 59 90771188 90771208 TTATTAGCTTCCAGCAACAGC 59 Novel Rattus norvegicus 81 AABR07016545.1 ENSRNOG00000060432 ENSRNOT00000087724 3 1 1 121 14 102809494 102878625 CTGAAATGGCAGGATGCAG 59 102809391 102809412 TGTATTAGTGACAGACATGCCA 60 Novel Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 2 1 1 83 1 24073467 24073488 GGACTGATTTCCAATGAATGAC 58 24072703 24073425 CAACTGTATGTGCTGTCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.8 ENSRNOG00000061458 ENSRNOT00000090210 1 1 1 168 10 93185060 93185084 GAAGAGGAGATTGACATGATAAAGG 60 93188124 93188147 CGTCTAGTTCAAGAATAAAGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000723.3 ENSRNOG00000061761 ENSRNOT00000090333 2 1 1 70 1 24610550 24610568 CATGAAGAAGCACCAGTCG 59 24610001 24610019 CCATCAGCCAATCAGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000725.1 ENSRNOG00000055637 ENSRNOT00000090824 1 1 1 81 1 24826735 24828002 AACAAGAGCTCCTACTTCAGG 60 24828042 24828063 TGTGCAGTAATGACATTACCTC 59 Novel Rattus norvegicus 81 AABR07049033.2 ENSRNOG00000057129 ENSRNOT00000086258 2 1 1 60 5 100854670 100854688 TGCTATGACATGTCAGCCA 59 100852799 100852817 GCAATGGACTTCTCAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049111.2 ENSRNOG00000058292 ENSRNOT00000081710 2 1 1 80 5 105967275 105968048 TTCGGTCATGAAACTGCTG 59 105967213 105967231 TGACAGCTTAATTCCTGCC 58 Novel Rattus norvegicus 81 AABR07016919.1 ENSRNOG00000054585 ENSRNOT00000077506 1 1 1 80 15 5048662 5049421 GAGGTCAAAGTTTGATCAGAAGG 60 5048604 5048624 TTCTCCAAACGCTTCATTCTC 59 Novel Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 2 1 1 60 5 111966002 111966022 TTACGAAGTACTGAGGATGGT 58 111966043 111978208 CTCACAAGTTGTCTCAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049292.1 ENSRNOG00000058472 ENSRNOT00000088984 1 1 1 80 5 114338445 114338464 CTGTTAGAGAATGAGCCCAG 58 114205282 114338405 TGTAGATTTCCTTCTATCTGCG 58 Novel Rattus norvegicus 81 AABR07030739.1 ENSRNOG00000057534 ENSRNOT00000082716 1 1 1 110 10 102604624 102605981 TCCCTTCAGAGCTGAAGAC 59 102606055 102606073 TGATCACTGTCATCTGGGC 60 Novel Rattus norvegicus 81 AABR07049353.2 ENSRNOG00000059390 ENSRNOT00000085331 1 1 1 80 5 118187842 118187860 GAGGAACCAAGGATCAGAC 57 118187903 118212942 TTTGATGCTCATCTGGACTG 58 Novel Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 1 1 1 72 15 12756899 12792303 TCAATGGTACAACAGCTCCA 59 12792338 12792356 AATGTGAAGCTGGAGGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017159.2 ENSRNOG00000061047 ENSRNOT00000082478 3 1 1 80 15 13971906 13973753 AAACACAGCATTGTCTATCTGC 60 13973794 13973812 TCACTGATGGGATCTGTGC 60 Novel Rattus norvegicus 81 AABR07062069.1 ENSRNOG00000059103 ENSRNOT00000077879 3 1 1 76 4 160419541 160419559 ATTCTGCAGGGATAGCCTG 59 160421875 160421894 AAGATGACCTCACTGTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001054.1 ENSRNOG00000055337 ENSRNOT00000089405 2 1 1 86 1 35884479 35885092 GGAAGTGCTTGTGAGAATGC 60 35884412 35884436 CATCTTTATTGCTCTGAGAGTAGTG 60 Novel Rattus norvegicus 81 AABR07062350.1 ENSRNOG00000053476 ENSRNOT00000081475 3 1 1 112 4 170476689 170476707 AGATTCCTCAGTAGCCACC 59 170473541 170473559 TTCAGTGGTTCAGGAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000081949 1 1 2 80 1 42217065 42217083 CTGAGGACGCCATATTGGA 59 42217124 42229990 GGTCCAGAAATTTCAAGTACCT 58 Novel Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000081949 3 1 2 93 1 42217052 42217070 ATAGCTGAGTCCACTGAGG 58 42217124 42229990 GGTCCAGAAATTTCAAGTACCT 58 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776,ENSRNOT00000082851 2 2 2 92 5 132700541 132700561 CAAGTTCCAATGTGAATCCAG 58 132706091 132708826 CATTTATGCCTGGATTCGC 57 Novel Rattus norvegicus 81 AABR07062477.2 ENSRNOG00000052597 ENSRNOT00000080805 3 1 1 83 4 179210146 179210164 GAACTACCCATGCTCAAGG 58 179210211 179210603 ATTCAACCTCTGCTCTTCC 57 Novel Rattus norvegicus 81 AABR07062502.1 ENSRNOG00000060730 ENSRNOT00000089565 1 1 1 80 4 180142410 180150417 TGTATCAAGTTCTCTTGGAGAC 58 180142351 180142369 TTGGAGGAGTTAACAAGCC 57 Novel Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 2 1 1 60 15 29664803 29664822 ACAGTAGCCTGGAAACTCAG 60 29664844 29666881 CTCTTGAGGACACTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031674.5 ENSRNOG00000061675 ENSRNOT00000080852 3 1 1 80 18 25249614 25249634 CAATTTGGATGAGGAAACAGC 58 25248854 25249572 AGTGCTGGCTTATCATCCT 59 Novel Rattus norvegicus 81 AABR07049804.1 ENSRNOG00000059592 ENSRNOT00000085217 2 1 1 80 5 138911944 138915678 AGCCAGAGGTAGAAGAAGC 59 138911882 138911900 AAGCTAGGCGAACATTTCG 59 Novel Rattus norvegicus 81 AABR07062833.1 ENSRNOG00000053723 ENSRNOT00000084382 3 1 1 83 6 11094351 11094783 GTTACTCTGCAACATCTACTTGAG 60 11094824 11094843 CAAGCCAGGCTGTTAATCTG 59 Novel Rattus norvegicus 81 AABR07063152.1 ENSRNOG00000053643 ENSRNOT00000089442 2 1 1 110 6 19299787 19299805 TTCAGAATGGAGCAACTGC 59 19299876 19300734 GAGCCTTATATCATTTGCCCTG 59 Novel Rattus norvegicus 81 AABR07001599.1 ENSRNOG00000059913 ENSRNOT00000087624 1 1 1 90 1 54127179 54127197 GCACAACAGAGTTGTTCCC 59 54126662 54127128 CATCCTCTAGTGATCTTCTGGG 60 Novel Rattus norvegicus 81 AC116285.1 ENSRNOG00000052566 ENSRNOT00000081190 1 1 1 80 15 34098507 34100426 ATTGTTCCCAAAGAACCCG 58 34100468 34100488 CCTTCCATCCTTCTTAGACCA 59 Novel Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 2 1 1 104 6 26142096 26145366 TTGAGGCACTGTCTCAGAG 59 26145434 26145452 GTCTACAGAGCAAGTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001634.1 ENSRNOG00000060438 ENSRNOT00000078019 3 1 1 121 1 54441389 54441408 TTCCTCCATAGGTCAGTGTC 59 54441152 54441305 ACCACTGAAGGAACCTCTG 59 Novel Rattus norvegicus 81 AABR07018064.1 ENSRNOG00000061921 ENSRNOT00000089924 2 1 1 80 15 38338429 38338448 TGGCTTTGCTTTCTAGACAC 59 38338160 38338389 TAAAGTGACAGATGCTATCCCA 59 Novel Rattus norvegicus 81 AABR07018087.1 ENSRNOG00000058383 ENSRNOT00000086630 1 1 1 80 15 38738082 38738100 AATGGTGTTCTCCTGAGGC 60 38738141 38751348 TACTTGTTCAACCTTGGTTGTC 59 Novel Rattus norvegicus 81 AABR07063511.2 ENSRNOG00000055114 ENSRNOT00000089260 3 1 1 97 6 32581102 32581903 GAAAGCAATGCCCTTCGTC 60 32581023 32581044 TGAGAAGTTCTTATCGGTTCCA 59 Novel Rattus norvegicus 81 AABR07050135.1 ENSRNOG00000053363 ENSRNOT00000090564 1 1 1 61 5 153036524 153036542 CCTTAGACATGCCTTGCAC 59 153034848 153034867 GTTGACACTGGAGATCACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050146.1 ENSRNOG00000054630 ENSRNOT00000077685 1 1 1 108 5 153403783 153403801 GTTTCGCTTTCTTCCCAGC 60 153403597 153403615 TCTCTAGGACCTGGGACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050146.1 ENSRNOG00000054630 ENSRNOT00000077685 2 1 1 109 5 153403784 153403802 GGTTTCGCTTTCTTCCCAG 59 153403597 153403615 TCTCTAGGACCTGGGACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 1 2 2 80 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199562 TTCCCTGAGAAGTGAATTGC 58 Novel Rattus norvegicus 81 AABR07001942.1 ENSRNOG00000055124 ENSRNOT00000082759 1 1 1 80 1 62532644 62532664 GATCTTGCTCAAAGAGGAACC 59 62507520 62532602 GCCACATGCATCCTTAAGC 60 Novel Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 1 1 1 113 6 38807571 38807589 CAGGAGGAAAGAAGGGTCC 59 38806293 38807495 TTTGTCTTTGTGGTTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.2 ENSRNOG00000056615 ENSRNOT00000079323 3 1 1 70 6 38859622 38859640 ATGAATGTCCCTGGACCTC 59 38858030 38858048 CCACGTAGAACAATGGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 3 1 1 61 6 39679926 39679948 AACTATCCAGCATCTAGAAGAGC 60 39679969 39692702 AATGGCATGCAGTTCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050423.1 ENSRNOG00000054302 ENSRNOT00000085172 1 1 1 80 5 164359904 164359925 TTGTAAATCGAAAGTAGGAGCC 59 164356228 164359864 ACAACCGGATTTGAGAACTG 59 Novel Rattus norvegicus 81 AABR07002262.2 ENSRNOG00000061569 ENSRNOT00000090639 1 1 1 80 1 70290394 70297313 TTGCCTTCCTAGGTACCAG 58 70297357 70297375 TCTTCCTCTGTTGCTTGTG 58 Novel Rattus norvegicus 81 AABR07018447.1 ENSRNOG00000057931 ENSRNOT00000090053 2 1 1 92 15 58308021 58308039 ACACTTCTTGGGAGAGCAG 59 58307768 58307965 CTACCTCTTCCCAAGAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032348.2 ENSRNOG00000059170 ENSRNOT00000082212 1 1 1 81 18 62228180 62229870 GAAGAAAGGATCAAATCAGGC 57 62229912 62229931 CTAGAGTCTCTGCTACAGGA 57 Novel Rattus norvegicus 81 AABR07032393.1 ENSRNOG00000055190 ENSRNOT00000080879 3 1 1 92 18 63834728 63838947 TTGGCAGACTGAGGTTGAG 60 63834654 63834672 CTCTCATCCTTCCAGGGTC 59 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 3 1 1 74 18 64304034 64309479 GGCCCTGACCTTTATGGAG 60 64309512 64309535 GCTTAGTCTGTTGTATTGAAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050498.1 ENSRNOG00000056723 ENSRNOT00000091304 1 1 1 80 5 167270395 167270415 ATGACTGCTTTCCTTACAACC 59 167268995 167270353 CTCAGACGTCACTACCCAG 59 Novel Rattus norvegicus 81 AABR07050498.1 ENSRNOG00000056723 ENSRNOT00000091304 2 1 1 80 5 167268999 167270357 CATTCTGGGTAGTGACGTC 58 167268937 167268955 CACATGTTTGCCAAATGCT 58 Novel Rattus norvegicus 81 AABR07063742.1 ENSRNOG00000052993 ENSRNOT00000091474 2 1 1 83 6 45133757 45133775 CATCTCACAGTTTGGGCAC 59 45133949 45133967 TCAGTGAGTCCATCTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002627.1 ENSRNOG00000060587 ENSRNOT00000080668 1 1 1 141 1 78112685 78147919 GAGAATGGGTTACAGGCGT 60 78148021 78148042 TCTTACCAAACCATTTCTCCCT 60 Novel Rattus norvegicus 81 AABR07063746.1 ENSRNOG00000054844 ENSRNOT00000081221 3 1 1 82 6 45649320 45649886 TTCATCTGCTCCAAATCTACAC 59 45649929 45649947 GTGGTGCTCTTGACTTCTG 59 Novel Rattus norvegicus 81 AABR07063751.1 ENSRNOG00000059011 ENSRNOT00000090517 3 1 1 63 6 45861252 45866014 TAGTCCTGACAGGAGGACC 60 45866040 45866059 AGCATAGGCTTTGTGTTTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000079226 2 1 2 80 18 68679789 68679809 AAGGAGAATGGATTCTCATGG 58 68552202 68679747 AAGATGTGTCCTCCTTGGT 58 Novel Rattus norvegicus 81 AABR07002868.2 ENSRNOG00000057222 ENSRNOT00000080831 2 1 1 81 1 87560473 87560492 CTTCTCCAGGTCATGATCCT 59 87560533 87562815 GGAACATCACCATACTATGAGC 59 Novel Rattus norvegicus 81 AABR07051310.1 ENSRNOG00000052734 ENSRNOT00000088404 1 1 1 80 3 4766221 4766241 CTAATGTTCACCATCAGAGCC 59 4763291 4766184 CTTCCTCATGATCTCATAGAAGTG 59 Novel Rattus norvegicus 81 AABR07051321.1 ENSRNOG00000061920 ENSRNOT00000087635 1 1 1 80 3 4894664 4895534 TGAGATCCAGGTGTACAGAC 59 4895575 4895595 CGTTGGAAGTAGGTAAAGGTG 59 Novel Rattus norvegicus 81 AABR07064131.1 ENSRNOG00000059696 ENSRNOT00000085271 2 1 1 80 6 65779385 65782284 GAGGAAATTGAAGAACTCTGGA 58 65782323 65782343 GATAAATCAGTGCCGAGTCAG 59 Novel Rattus norvegicus 81 AC126134.1 ENSRNOG00000060916 ENSRNOT00000078700 1 1 1 81 3 5584208 5584230 TCAACTGGATCTATTCAGAGGAG 59 5584271 5584606 GGTCACAGCTACCTTCCAG 60 Novel Rattus norvegicus 81 AC115341.2 ENSRNOG00000059168 ENSRNOT00000081056 3 1 1 96 3 9109354 9109372 TACGGGAAGATTGGTGGAG 59 9115109 9115128 CAGTTCACAGGATTCCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064578.1 ENSRNOG00000054231 ENSRNOT00000090793 1 1 1 80 6 85561529 85561549 GCATCACTGAGCTGTATTACC 59 85552779 85561488 ATCATTGACTGAGTGTGAGC 58 Novel Rattus norvegicus 81 AABR07032786.1 ENSRNOG00000057629 ENSRNOT00000079901 1 1 1 60 18 82063604 82063622 GTAGCAGGTTCATGTGCTC 59 82077306 82077324 TTGGCGATGTTCTCATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000089772 2 1 2 60 1 94093012 94093030 ATGGACTTTGGAAGGTGAC 57 94092970 94092990 GCTGAATACAAGTTCATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003040.1 ENSRNOG00000055333 ENSRNOT00000079642 2 1 1 61 1 94454018 94454036 AGAATGGTCATCGAGTGGG 59 94451363 94451381 AAGAGGTAGAGGATGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064755.1 ENSRNOG00000060880 ENSRNOT00000079915 3 1 1 80 6 93876282 93877366 CCTGGCCAAGTTAACACAG 59 93877404 93877428 ATAGTATCTGTAGTAGTTGCTCCTC 59 Novel Rattus norvegicus 81 AABR07051642.1 ENSRNOG00000057526 ENSRNOT00000084373 2 1 1 80 3 18601829 18601972 GGATTACAGATGCCATACGTG 59 18602014 18602032 TGGTGACAGTTTCTCCCAG 59 Novel Rattus norvegicus 81 AABR07003056.1 ENSRNOG00000055248 ENSRNOT00000088377 3 1 1 81 1 95430461 95430480 AGGTGATCTTCAAGTTGGAG 57 95430522 95432567 TTATGAATACCTGGAAGGCTG 58 Novel Rattus norvegicus 81 AABR07033301.1 ENSRNOG00000061487 ENSRNOT00000078592 2 1 1 60 11 16670861 16670882 CAAAGGATGGATACATGGATGG 59 16669874 16669893 AGTGCTTCGAGTGTCATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033484.1 ENSRNOG00000059738 ENSRNOT00000089854 3 1 1 61 11 23815817 23815836 ATTTGATCCATCCTGCAAGG 58 23796138 23796157 GGCAAATTGACTGAAAGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051882.1 ENSRNOG00000054632 ENSRNOT00000089075 3 1 1 82 3 25430598 25430617 TCACTGATTTACTCATGGCA 57 25429753 25430556 CAAAGATGTTTGGAGACATCAG 58 Novel Rattus norvegicus 81 AABR07020905.1 ENSRNOG00000059385 ENSRNOT00000080733 2 1 1 80 13 45575439 45575770 CTTGGTTATGACAGAATTGGCT 59 45575808 45575829 GATGAACTCCTTCATCAGTCAG 59 Novel Rattus norvegicus 81 AABR07033645.1 ENSRNOG00000054634 ENSRNOT00000083195 1 1 1 93 11 33093545 33093563 ATAGAAGCTGGTGCATGGG 60 33084752 33093488 CCTTGGTTCTCCACCAGAG 60 Novel Rattus norvegicus 81 AABR07003310.2 ENSRNOG00000056203 ENSRNOT00000081118 2 1 1 90 1 105035814 105039436 CTTTACAGTTGCTTCCAGGG 59 105039487 105039507 GCTGACACTGCTAATGATGAG 59 Novel Rattus norvegicus 81 AABR07020966.1 ENSRNOG00000051872 ENSRNOT00000086053 3 1 1 76 13 48979266 48979284 CTACATCAGGTTCCTGGCT 59 48979932 48979950 TTAGGAGACCGGATTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003380.1 ENSRNOG00000051504 ENSRNOT00000086235 3 1 1 84 1 108266044 108266063 TCTTCTGAGCTCCACATCTG 59 108266106 108267273 CAGGGAAATCTTCATACACAGTG 60 Novel Rattus norvegicus 81 AABR07003398.1 ENSRNOG00000060326 ENSRNOT00000089731 2 1 1 67 1 108917995 108919137 TTGAATAAGGGCATCATCCTG 58 108919163 108919184 GGAATGCAATGAATCATCTTGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052390.1 ENSRNOG00000057218 ENSRNOT00000086277 2 1 1 80 3 50857125 50858460 CCATGTCATTGCATATCAGCC 60 50857065 50857087 GCTGCTTCTATCCATGAATATGG 60 Novel Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 1 1 1 63 3 53506074 53506092 GAGTGAAGTCAACCCACAG 58 53444379 53506047 AAACACCTTGCCAAACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052504.1 ENSRNOG00000054287 ENSRNOT00000085218 1 1 1 86 3 58301891 58301909 GTGTCAGCTGAAGCAATGG 60 58301213 58301235 CGCTTTGGTAGTTATTACCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021503.1 ENSRNOG00000056444 ENSRNOT00000089079 2 1 1 80 13 75234118 75234137 TTGCCAAATCTTAAGCTCCT 58 75234179 75235093 TCTCCCACAAACTCAAACTG 58 Novel Rattus norvegicus 81 AABR07065364.1 ENSRNOG00000061184 ENSRNOT00000083777 2 1 1 69 6 124247205 124247224 AAGAGAAGAATCAGGTCGGG 59 124247725 124247743 TTGTGAACTGTAAGCTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021589.1 ENSRNOG00000053653 ENSRNOT00000082244 3 1 1 104 13 79662515 79662535 CAACCATTTGTCTACCACAGC 60 79662601 79663043 TCAATCGAAGGCCCTTGAG 60 Novel Rattus norvegicus 81 AABR07034455.2 ENSRNOG00000057133 ENSRNOT00000088184 2 1 1 80 11 72479521 72479539 AGGTTCATGAAGCCTTGAC 58 72479583 72489143 CATGGAGAGTCTGACACAG 57 Novel Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000085252 1 1 2 80 6 127196893 127199440 CGTACAACAGGCAAACACTC 60 127196832 127196850 GTCTCACCCTTCAGAGTCG 60 Novel Rattus norvegicus 81 AABR07021730.1 ENSRNOG00000055968 ENSRNOT00000087825 2 1 1 60 13 88130769 88130790 GACTGTGTTCAAGACATTTCAC 58 88077624 88130751 ACTAAGTGTGATACACCATGCT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07034586.1 ENSRNOG00000053105 ENSRNOT00000079686 2 1 1 80 11 80051476 80056025 TCTCAGTGTTGTCTTTCCTAGG 60 80056066 80056084 TGAAGGAGACCACTGACTG 59 Novel Rattus norvegicus 81 AABR07065455.1 ENSRNOG00000052292 ENSRNOT00000080264 2 1 1 60 6 129095663 129095682 CATCTTACTCACCCTGTCCT 59 129095908 129095927 TTTCCACTGAAGTCTTGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052666.1 ENSRNOG00000054083 ENSRNOT00000091511 2 1 1 82 3 68562518 68564864 ATCAGCAGGATAAATCCAGC 58 68564906 68564927 CCAATATCTTAGTCTCCTCTGC 58 Novel Rattus norvegicus 81 AABR07065476.2 ENSRNOG00000061068 ENSRNOT00000088039 2 1 1 60 6 130187199 130187217 ACAGTTGGTAGACAGTCCC 59 130186712 130186731 GACATGATTTGCTCTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC128915.1 ENSRNOG00000053197 ENSRNOT00000085177 3 1 1 148 13 98559814 98559832 CTGTACAGAGTCCATGCCA 59 98560443 98560461 GATGCCTTTCGCCTAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072881.1 ENSRNOG00000060062 ENSRNOT00000087872 1 1 1 60 3 71935335 71935353 TAGCGAATTCACTCTGCTG 58 71933705 71933727 GCTATATCTGGTTACTTCTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000083200,ENSRNOT00000081827 2 2 2 71 13 100068876 100068894 AAACATTGACCTTGCTCCA 58 100071959 100071980 TTCTCAGGGTTTCTACAATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034833.2 ENSRNOG00000056188 ENSRNOT00000083437 3 1 1 81 12 57529 57889 ACTACATGGCATTTGACAGG 58 57467 57488 CTTGTGATCCAATTAGACACCT 58 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 2 1 2 141 1 131386721 131431805 GGTGATACTACAACCACTGAC 58 131385850 131386618 GCAACTTGTCATAGCCTGG 59 Novel Rattus norvegicus 81 AABR07035012.1 ENSRNOG00000061869 ENSRNOT00000088456 2 1 1 256 12 3276231 3279607 GGAGTGATGTCTTAAGAAAGATGTC 60 3279821 3279839 GTAGGACCTTCTTCCTGCA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07004305.1 ENSRNOG00000057892 ENSRNOT00000085298 1 1 1 80 1 136298290 136298309 TCTCAGAGCATCTGCTTCAG 60 136295286 136298248 GCCAGAAACAGTCCTTACAG 59 Novel Rattus norvegicus 81 AABR07004305.1 ENSRNOG00000057892 ENSRNOT00000085298 3 1 1 81 1 136298295 136298313 ATGTTCTCAGAGCATCTGC 58 136295289 136298252 AGAAACAGTCCTTACAGATGC 58 Novel Rattus norvegicus 81 AABR07035382.1 ENSRNOG00000059403 ENSRNOT00000092129 2 1 1 104 12 12112037 12112055 CTCTCCCAGACACTGACAG 59 12112123 12113401 GGAATAGTTGCTCCTGGCA 60 Novel Rattus norvegicus 81 AABR07004421.1 ENSRNOG00000061327 ENSRNOT00000088363 2 1 1 86 1 141964144 141964162 CTAGGAGGTCTGGTTGAGG 59 141961913 141964094 TCTTTGCCACCTCTAGCTC 59 Novel Rattus norvegicus 81 AC126572.4 ENSRNOG00000059466 ENSRNOT00000086870 1 1 1 87 12 13210937 13210955 CAATTTCCGTCTCCAGGGT 60 13211003 13212067 GGCAAACAAGAAACAAATGGAG 59 Novel Rattus norvegicus 81 AABR07024616.1 ENSRNOG00000061034 ENSRNOT00000082153 3 1 1 111 16 9088168 9088189 AACAGATTCATGCATCGAACTC 60 9088261 9088427 CAGTTCCAGACCTGAGAGG 59 Novel Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 3 1 1 60 9 4621544 4622735 AGGAATTGTGGGTGATTGG 58 4622756 4622777 TTCATCAAACCTCTCATTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024641.1 ENSRNOG00000055192 ENSRNOT00000081730 2 1 1 90 16 9896254 9896272 GAGTGAGAGTGACTGGGAG 59 9898031 9898049 TCTATCTCAGGAGACTCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066435.1 ENSRNOG00000049194 ENSRNOT00000083795 1 1 1 81 9 8817729 8853128 AACAGCAGGTCTGAAATTCTC 59 8817668 8817687 TGTACCACTTCTCACCAAGG 59 Novel Rattus norvegicus 81 AABR07066529.3 ENSRNOG00000056941 ENSRNOT00000086135 2 1 1 68 9 10804991 10805009 GGTGCTACAGCTTCTAACC 58 10804084 10804102 TAGGTTGTTCACGGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024653.1 ENSRNOG00000055677 ENSRNOT00000085561 1 1 1 80 16 10354444 10354464 AGCGACAAATCTACAGAAAGG 59 10354611 10355506 CTAGACCTCTTAGTGGCTCC 59 Novel Rattus norvegicus 81 AABR07024721.1 ENSRNOG00000056527 ENSRNOT00000077902 3 1 1 84 16 12592271 12592291 TATGGCCATTTACTCAAAGGG 58 12592082 12592226 GCAGAAACCTTCTCATCCAG 59 Novel Rattus norvegicus 81 AABR07053483.1 ENSRNOG00000056645 ENSRNOT00000085500 3 1 1 60 3 109815390 109815410 TTCTCATTTAGAGGATGTGCC 58 109815232 109815253 AAGGTGGTAGAAAGACAATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066735.1 ENSRNOG00000051921 ENSRNOT00000080300 2 1 1 82 9 13523033 13523051 CTCTCCCTTCATGGATGCT 59 13523095 13533206 TAAAGATAACTGCTCCTGCCT 59 Novel Rattus norvegicus 81 AABR07066748.1 ENSRNOG00000051413 ENSRNOT00000081772 2 1 1 80 9 14480190 14480209 CTTTGGAAAGGCAAACAGTC 58 14480250 14485730 CATTCCTAGATGTTGAGGCTG 59 Novel Rattus norvegicus 81 AABR07024799.3 ENSRNOG00000060232 ENSRNOT00000087217 3 1 1 94 16 17223714 17237472 ATTTCTTGCAAACAGAGCAC 58 17223639 17223657 CTTGGAGGACACATGACAC 58 Novel Rattus norvegicus 81 AABR07004783.1 ENSRNOG00000059114 ENSRNOT00000082580 3 1 1 81 1 156493540 156506095 ACTTCTGGACTACCATCGTG 59 156506138 156506157 ATTCTTGTCCCTCAGCTTCC 60 Novel Rattus norvegicus 81 AABR07004823.1 ENSRNOG00000053655 ENSRNOT00000079979 1 1 1 96 1 159635514 159635534 GATAGCAAAGGCTATATGCCC 59 159634136 159635456 ATCTTTGCCTCATTGTGCC 59 Novel Rattus norvegicus 81 AABR07035779.2 ENSRNOG00000061063 ENSRNOT00000080849 1 1 1 87 12 22322070 22322088 ATATGACGGAAGGCATCTG 57 22322136 22322674 GTTATTGTTGTAGTTCCCACAC 58 Novel Rattus norvegicus 81 AABR07035779.2 ENSRNOG00000061063 ENSRNOT00000080849 3 1 1 89 12 22322070 22322088 ATATGACGGAAGGCATCTG 57 22322138 22322676 CTGTTATTGTTGTAGTTCCCAC 57 Novel Rattus norvegicus 81 AABR07053749.1 ENSRNOG00000053070 ENSRNOT00000088540 1 1 1 80 3 124004597 124004618 GGTTCTGATGGATATGGAAGTG 59 124004655 124004797 TCCATAATTTCCTCTAGGTCCTC 59 Novel Rattus norvegicus 81 AABR07004868.1 ENSRNOG00000056551 ENSRNOT00000081639 2 1 1 80 1 163520434 163522431 CTCAGACAAGGATCTGGGT 58 163522474 163522493 CTATGGATGTGCAGATTGCT 58 Novel Rattus norvegicus 81 AABR07053771.2 ENSRNOG00000057381 ENSRNOT00000079791 2 1 1 80 3 125230152 125247192 TTAAATGCCACTTGGGATCC 58 125247234 125247253 ACTTCCCATCTCTGTACAGG 59 Novel Rattus norvegicus 81 AABR07053771.2 ENSRNOG00000057381 ENSRNOT00000079791 3 1 1 80 3 125230151 125247192 CTTAAATGCCACTTGGGATCC 59 125247233 125247252 CTTCCCATCTCTGTACAGGG 59 Novel Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 3 1 1 61 16 24630695 24632210 CTCCCAACCTTGAGTAAATATAAGG 59 24632225 24632247 CTCTGTTTCCTTGTAAGAACTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067034.1 ENSRNOG00000052150 ENSRNOT00000088992 1 1 1 127 9 27210686 27213025 CTGGATCATCCCACATGGA 59 27210577 27210598 AGAGAATCTAAGGATTGCTGTG 58 Novel Rattus norvegicus 81 AABR07025345.1 ENSRNOG00000060160 ENSRNOT00000084750 1 1 1 89 16 34496897 34496915 AGATCAAACTGCCTCTGCA 59 34494259 34496844 TATCGATGAGCCTTCAGCA 59 Novel Rattus norvegicus 81 AABR07053885.1 ENSRNOG00000056548 ENSRNOT00000089258 3 1 1 90 3 132532302 132535272 CAAGTGCAAGGATGATGACAG 60 132532232 132532250 TCTGTACTCGGAACAAGGG 59 Novel Rattus norvegicus 81 AABR07005569.1 ENSRNOG00000057326 ENSRNOT00000077794 1 1 1 80 1 187973703 187974423 TACTCTGGCCAGGTATTCC 58 187974466 187974485 GGAAGAATGGTCGTTTCTGG 59 Novel Rattus norvegicus 81 AABR07025594.1 ENSRNOG00000060299 ENSRNOT00000080438 1 1 1 80 16 41038166 41038186 GATGGTAAGAGATGTCAGACG 58 41038228 41039868 CATGTGACTTGCTCGTCTG 59 Novel Rattus norvegicus 81 AABR07036010.1 ENSRNOG00000060882 ENSRNOT00000090466 1 1 1 99 12 30502262 30509630 GAGGTTTCCCAGGGATCAG 60 30509693 30509711 TTTAATCCCAGCACTCGGA 59 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000084175 3 1 3 108 3 142319194 142319212 AAGATGGCTTTCCCAACTC 58 142280709 142319124 CAGGATAAACTTCAATGCCCT 58 Novel Rattus norvegicus 81 AABR07067310.1 ENSRNOG00000055308 ENSRNOT00000088507 1 1 1 80 9 39531884 39531902 TTTCAGTCATGAGCTGACC 58 39530166 39531843 TCACTTGGGTATCTTAACTCAG 57 Novel Rattus norvegicus 81 AABR07054281.1 ENSRNOG00000059685 ENSRNOT00000087630 3 1 1 81 3 146214859 146214882 CACTCTTGACTTTACATCATGTCC 60 146211442 146214824 GCAGAAGAAATAATCTCAGACAGG 60 Novel Rattus norvegicus 81 AABR07067388.2 ENSRNOG00000061446 ENSRNOT00000083294 3 1 1 86 9 42268962 42268981 AAGAAAGGAGATGCAGAGCA 60 42216499 42268913 AGTCATCATGGGCTCACTG 60 Novel Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 2 1 1 94 12 33210019 33212893 GATCTCTGCACCTCAGGTG 60 33209943 33209961 GGTTCCAGATGAGCCAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072511.1 ENSRNOG00000054453 ENSRNOT00000078056 3 1 1 80 16 49163653 49163673 CCATTTCTCAAGAGGTTCTGC 59 49163709 49165484 GAATATCCATTCTCCACTGTTTCTC 60 Novel Rattus norvegicus 81 AABR07025799.1 ENSRNOG00000052272 ENSRNOT00000088099 1 1 1 94 16 50896032 50896050 AGCAGCTCTACCCAAACTG 60 50896711 50896730 ACTTCTGTAGCATGTTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 2 1 1 98 16 51791909 51791927 CTCTTCTACCACACCAACC 58 51791096 51791847 TTTGCAGAGACATTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054341.1 ENSRNOG00000052433 ENSRNOT00000087730 3 1 1 94 3 148973443 148973462 ATCTGAAATTCCAGCTGCCT 60 148973519 148974068 GATCCCAGTCTCGTTGGAG 60 Novel Rattus norvegicus 81 AABR07025953.1 ENSRNOG00000053342 ENSRNOT00000081303 2 1 1 88 16 56054680 56054698 GGTACCGACTCTGTTCCTG 60 56048651 56054633 AAGAAAGATCTGTCTATCTCCACC 60 Novel Rattus norvegicus 81 AABR07025953.1 ENSRNOG00000053342 ENSRNOT00000081303 3 1 1 88 16 56054679 56054697 GTACCGACTCTGTTCCTGG 60 56048650 56054632 GAAGAAAGATCTGTCTATCTCCAC 59 Novel Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 1 1 1 60 16 58774473 58777751 ATAGAAGAGTCTGCCCGGA 60 58774431 58774449 AACACGTTCTTGCCATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067469.2 ENSRNOG00000053542 ENSRNOT00000092197 3 1 1 80 9 47965443 47965461 TCTTTCTACGGTGACTGCA 59 47965504 47970210 CCAGGACTCCTTTCCTACAG 59 Novel Rattus norvegicus 81 AABR07067501.1 ENSRNOG00000057874 ENSRNOT00000089189 2 1 1 80 9 49510110 49510715 AAAGCTGGTTTGAGTCTCAG 58 49510758 49510776 CAATCTGTGAGACTCTGCA 57 Novel Rattus norvegicus 81 AABR07036413.2 ENSRNOG00000057715 ENSRNOT00000080265 1 1 1 61 12 42566880 42566898 GATGAAGGAGCGATGTCTG 58 42568527 42568545 AACAAAGGCTTGCCTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067767.2 ENSRNOG00000061265 ENSRNOT00000085441 2 1 1 81 9 62499135 62499155 CCTAACAGAGAAGTAACGTCC 58 62485680 62499092 AATTTCTGGACCTTTGCCT 57 Novel Rattus norvegicus 81 AABR07005977.2 ENSRNOG00000052927 ENSRNOT00000090758 3 1 1 80 1 210505833 210505853 TGTTGTCTCTGAAGTTCACAC 59 210504799 210505793 TTCTTCAGCACACCAAATTCC 60 Novel Rattus norvegicus 81 AABR07067855.1 ENSRNOG00000061886 ENSRNOT00000089791 1 1 1 80 9 68061630 68061648 CAATCTTCCTACCGCTGTC 58 68043024 68061588 CTCCAATGTAGCTCCTTTCTC 58 Novel Rattus norvegicus 81 AABR07054680.1 ENSRNOG00000058758 ENSRNOT00000087486 3 1 1 60 3 166823193 166823212 GGGTCATTCATACGAGTGGA 59 166823235 166823253 GTATCAGGGAGTTGCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067885.1 ENSRNOG00000052796 ENSRNOT00000090721 3 1 1 80 9 70901795 70942677 TTACAAGCATTTGGAGACTCTG 59 70901736 70901754 TACGGTGCAGAATATCGCA 59 Novel Rattus norvegicus 81 AC095390.1 ENSRNOG00000052761 ENSRNOT00000077618 1 1 1 108 12 51760387 51822456 ATGAATTGACCCAGCAAGGA 60 51760298 51760316 CTTCATGTTCTTGCCAGCA 59 Novel Rattus norvegicus 81 AABR07037104.1 ENSRNOG00000060484 ENSRNOT00000084383 1 1 1 80 X 12882427 12882448 TGAAGATATCACCAACTGATCC 58 12882486 12885191 ATAAACCAGTTCCATGGATGTC 59 Novel Rattus norvegicus 81 AABR07068053.1 ENSRNOG00000058100 ENSRNOT00000078057 3 1 1 84 9 80068360 80068379 CATCCTTTGGACTCCATCTG 58 80068423 80068784 CAGTCTACAGATGAGTCTAGCA 59 Novel Rattus norvegicus 81 AABR07068066.2 ENSRNOG00000056522 ENSRNOT00000089903 3 1 1 94 9 80669256 80669276 CTTTCCCTTCTAGATCCAGGA 58 80666960 80669201 GAAACATGGACTGTAGGGTG 58 Novel Rattus norvegicus 81 AABR07022162.2 ENSRNOG00000058314 ENSRNOT00000087172 2 1 1 86 13 110554285 110554304 TTCATTGTAGCAGCTTTGGG 59 110554353 110554797 TATCTATTGGCTGCTGCCC 60 Novel Rattus norvegicus 81 AABR07037607.1 ENSRNOG00000058086 ENSRNOT00000083399 2 1 1 81 X 25122059 25249902 GGTCAAACGTAACAAGAAATGG 59 25249944 25249962 ACTGTAGTACGGATGGGTC 58 Novel Rattus norvegicus 81 AABR07026499.2 ENSRNOG00000060624 ENSRNOT00000086410 3 1 1 106 16 79207069 79207330 CTGAACACTAATGAAAGATGGG 57 79206984 79207002 AGAGCCTAGAGATCATCCG 58 Novel Rattus norvegicus 81 AC135298.1 ENSRNOG00000061054 ENSRNOT00000081754 1 1 1 80 3 176393659 176395147 TTGTCTATTCAGGTCAGATGTC 58 176393600 176393618 GACAATCGAAAGGTTGTGC 58 Novel Rattus norvegicus 81 AABR07037927.1 ENSRNOG00000054850 ENSRNOT00000087600 1 1 1 153 X 35554537 35554555 GATCCTGCAGAAGATTGGG 58 35554670 35599133 AAATGAGTCCCTGGAATAGAC 57 Novel Rattus norvegicus 81 AABR07006453.1 ENSRNOG00000052693 ENSRNOT00000084649 3 1 1 83 1 235023305 235056623 GGAATCATCCATGAAAGGTCC 59 235056668 235056686 CATGGAAAGCCAAAGGCAG 60 Novel Rattus norvegicus 81 AABR07072528.1 ENSRNOG00000056333 ENSRNOT00000077932 2 1 1 88 16 82357733 82357751 CTGACTGGGTCTTGAAGCA 60 82357799 82359111 CTGACTGGAATTCTTGTCTTCAG 60 Novel Rattus norvegicus 81 AABR07039024.1 ENSRNOG00000061799 ENSRNOT00000085184 2 1 1 84 X 66412468 66412669 TACTAGGAAGGTGCAGAAGAC 59 66412715 66412733 TACGGTATGCTCCAAAGCC 60 Novel Rattus norvegicus 81 AC112440.1 ENSRNOG00000057332 ENSRNOT00000090483 2 1 1 80 9 93432302 93444785 ATGAAGATATGGAGCTCAAGGA 59 93432243 93432261 ATGACCCAACCGACATCAG 60 Novel Rattus norvegicus 81 AABR07026565.1 ENSRNOG00000056874 ENSRNOT00000090339 3 1 1 80 16 83795319 83798632 ATTCCTCCTGCGAGATTATAGAG 59 83795261 83795279 TCAGGCAACCAAATCACCT 60 Novel Rattus norvegicus 81 AABR07026576.1 ENSRNOG00000058075 ENSRNOT00000078491 3 1 1 80 16 84212804 84212822 TGTTCCTGACATCACGAGG 59 84212864 84213815 TGATGGTTACAGCTAGACTGG 59 Novel Rattus norvegicus 81 AABR07068308.1 ENSRNOG00000056453 ENSRNOT00000087447 1 1 1 60 9 97539927 97539945 GATCTTCTGCAAGGTTCCA 58 97538729 97538749 ATCACTGATCACTGGATTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068341.1 ENSRNOG00000059110 ENSRNOT00000077785 3 1 1 81 9 99565477 99565990 AAGTGAAGTCACTCTGCCT 59 99566034 99566053 TCCAGTTCTCGAAGACTCTG 59 Novel Rattus norvegicus 81 AABR07068447.1 ENSRNOG00000055878 ENSRNOT00000085503 2 1 1 91 9 105826506 105826525 AGAGCAGAACTGGAGTTGTC 60 105826579 105828082 CTTCAGTCCTTCTGTGGCA 60 Novel Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 2 1 1 76 7 24031892 24034056 TGGGTCCTGAACTGAATAGAG 59 24034093 24034112 TAAAGGCTACCACAGTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056438.1 ENSRNOG00000061363 ENSRNOT00000082493 3 1 1 95 7 25649917 25649935 GAAAGGCGTGGGAATTGTG 60 25574358 25649858 AGGAACCTCTGAGGATCCA 59 Novel Rattus norvegicus 81 AC121740.1 ENSRNOG00000061638 ENSRNOT00000087745 1 1 1 121 1 255418241 255418934 TCTACACAGCCAAGACTGC 60 255419019 255419037 CAGAAAGCGAATGGACGTC 59 Novel Rattus norvegicus 81 AABR07027141.1 ENSRNOG00000061738 ENSRNOT00000082199 3 1 1 88 17 15153712 15153731 GGCTCTATTTCCTACTGACC 57 15153782 15155511 CCTCTTCACATCCTCTGTG 57 Novel Rattus norvegicus 81 AABR07072539.4 ENSRNOG00000060029 ENSRNOT00000085586 2 1 1 89 17 15336117 15336500 ACAAAGTGAGCTTTGAGCC 59 15336046 15336064 ATATGGCTCCTGGTGAAGC 60 Novel Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 1 1 1 60 17 18866611 18866910 AGATTCTGCCCTGTCAGAG 59 18866933 18866952 GACTGAATGAGACTTTGGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07027190.2 ENSRNOG00000060391 ENSRNOT00000077614 3 1 1 80 17 18875293 18879425 CAGGATGAAGTTAGGGAGCT 59 18879466 18879486 GAGTCATAACCTCCATGACTG 58 Novel Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 1 1 1 62 7 36160462 36160480 AATCCATCCCTCAAGCCTC 59 36160504 36164761 TCATTACACAAGGAGGAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545,ENSRNOT00000080819 2 2 2 82 17 19056493 19056512 GAGAAGACAAGGCTACTGGA 59 19056554 19056912 GGAGTTCTCCTTTCTTTCATGG 59 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 3 1 2 99 19 11671490 11686698 AAGGCTTGACTCCTGTCTC 59 11686760 11686779 CTCGCCTTCAATTTCATTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 3 1 1 60 17 20636835 20636858 CTGTGAAGTTACTGATTAGAGGAG 59 20636877 20668846 CAGCTGTGGTCCTTTACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 3 1 1 61 7 38667423 38667441 ATAGTCCGTTGCTATCCCT 58 38667466 38679333 TAAGCTGGTATTGTTGCGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056811.1 ENSRNOG00000053861 ENSRNOT00000085243 3 1 1 70 7 42113478 42113496 TTCAAGCAAAGTTCCCAGC 59 42114954 42114974 ATTGTCTTAGCTTGTGAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043001.2 ENSRNOG00000060505 ENSRNOT00000080200 3 1 1 85 19 16168706 16168725 AACATGAAACAAGTGAGCCT 58 16168167 16168658 CGTCTGATGTGTTCCTCTG 58 Novel Rattus norvegicus 81 AABR07056882.1 ENSRNOG00000054680 ENSRNOT00000090648 1 1 1 86 7 44983943 44983964 GGAAACATACACAGAAGTTCTC 57 44946771 44983898 CATGTCTTTGATGTTCTCCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 2 2 3 81 8 23495991 23496012 TACAGCATTATTAGCGTGTACC 59 23496052 23509007 GACATTTCCTTTCAACCTTGC 58 Novel Rattus norvegicus 81 AC110709.2 ENSRNOG00000056269 ENSRNOT00000081549 3 1 1 82 1 274377423 274381309 AATGTCTGGAAGGTCTGGA 58 274381355 274381373 CCTCTGGTCTTTAAGTGGG 57 Novel Rattus norvegicus 81 AABR07043625.1 ENSRNOG00000053062 ENSRNOT00000080396 3 1 1 82 19 32836216 32836236 TTCTCAAGTCCTCTGTCTCTG 59 32836280 32837392 GTCTCCAACTGTTGCTCTG 59 Novel Rattus norvegicus 81 AABR07069821.1 ENSRNOG00000061154 ENSRNOT00000081200 1 1 1 80 8 40902668 40903645 AGCAACATCTGGATAACACC 58 40902607 40902627 TATTGCTGTTTCTCCTCTAGC 58 Novel Rattus norvegicus 81 AC127140.1 ENSRNOG00000058510 ENSRNOT00000091087 3 1 1 80 2 8880221 8882413 TTTACCTCAAGACTACTTGCCA 60 8882454 8882472 CTCTTGGAAGTCAGAGCCA 59 Novel Rattus norvegicus 81 AABR07028998.1 ENSRNOG00000057152 ENSRNOT00000086268 3 1 1 80 10 1771586 1771606 GTCTCCTAGAATCCATGTCCA 59 1771647 1772632 CACCATCATCCCTGTAATCC 58 Novel Rattus norvegicus 81 AABR07029217.2 ENSRNOG00000051654 ENSRNOT00000086992 3 1 1 90 10 15772836 15772854 GGCACTTCCTCAACAAAGG 59 15772011 15772784 CCAAGTAGGAGGTTTAGTGCA 60 Novel Rattus norvegicus 81 AABR07007691.1 ENSRNOG00000058293 ENSRNOT00000089699 3 1 1 80 2 24345300 24353312 ATGACACAAGAAAGGCTCAC 59 24345239 24345257 TCCTCTCGAGTTTCTCACC 59 Novel Rattus norvegicus 81 AABR07058141.1 ENSRNOG00000056489 ENSRNOT00000079932 3 1 1 81 7 102162828 102162847 AGACTTCCACTTCTCAGGAC 59 102155696 102162784 ATCTCGTGAGATTGAGGCC 59 Novel Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 2 1 1 60 X 129561468 129561488 AGTCGAAAGAGGAAAGATGTG 58 129482866 129561452 GAGGTGTTTCACAGAATTCTATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058332.1 ENSRNOG00000058554 ENSRNOT00000084008 2 1 1 80 7 110624349 110673490 ACTCAAGAACATCAGAAGCA 57 110673532 110673551 CAGGCATCTTAGATGAAGGG 58 Novel Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 3 1 1 79 8 56024618 56024637 TCTGGCTCTCCATATTTGGA 58 56024043 56024576 TTTGTCCTTCGGAGTGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AC112328.1 ENSRNOG00000053602 ENSRNOT00000090955 1 1 1 80 8 59108009 59108028 TGACTCTCCAAGAACACCTG 59 59108071 59110122 GAGGGACTGTTGCTAGCTC 60 Novel Rattus norvegicus 81 AABR07072112.1 ENSRNOG00000057356 ENSRNOT00000087751 3 1 1 83 10 40707735 40710623 TCACGAACAGGTATCTTGTG 58 40707671 40707689 ACATTCCTGCTTGATTCCC 58 Novel Rattus norvegicus 81 AABR07029617.1 ENSRNOG00000059529 ENSRNOT00000091350 2 1 1 80 10 41145702 41146330 GTTTCCTATCTCAAGGTGGGA 59 41146371 41146390 CAAGGTATGACAAGGAACGC 59 Novel Rattus norvegicus 81 AABR07070265.1 ENSRNOG00000056498 ENSRNOT00000084245 2 1 1 82 8 62124508 62124526 TTTGAGCCAGGAAGAACAG 58 62125964 62125982 CTAGCTCCACAGTGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 2 1 1 60 X 155796471 155797961 TACTTTGACCAAGCCAGCT 59 155796429 155796448 CTTCTGTGGACTCTTCATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.2 ENSRNOG00000056352 ENSRNOT00000086111 3 1 1 80 10 41833748 41835193 TCTGTATCCTTCTTTAGGGCAC 60 41833689 41833710 CGTTATGGGTCTTTGGTTTCTC 60 Novel Rattus norvegicus 81 AABR07070331.1 ENSRNOG00000054108 ENSRNOT00000086237 1 1 1 61 8 65990397 65990415 TAGCAAGATTCTCCAGGGC 59 65990440 65990831 CAAGGTGTGAATCCACCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07007833.2 ENSRNOG00000056895 ENSRNOT00000079662 2 1 1 80 2 29784468 29784486 TGGAGCCAAGGAAATACCA 59 29784529 29786586 TTCTGAGATGACCCTTCCAG 59 Novel Rattus norvegicus 81 AABR07027962.1 ENSRNOG00000054943 ENSRNOT00000081987 1 1 1 60 17 51204741 51204762 AGAGGACATGATCAATAGATGG 57 51203964 51203985 GTGGATTCTCATAACATACGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028069.1 ENSRNOG00000057788 ENSRNOT00000087652 1 1 1 81 17 55556331 55557242 AGCTACCACCATGAGACTG 59 55556268 55556287 AGTTCAGCAGGAAACTACCA 59 Novel Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 1 1 1 60 20 5317953 5318590 CTTGGGACCTCAAGGAGAG 59 5317911 5317929 CACCTGAGTTCCAGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070532.1 ENSRNOG00000054547 ENSRNOT00000089415 2 1 1 81 8 74271549 74271568 CCATTGATCATGTCACAGGA 58 74271610 74272242 GAGAATGTTGTGGTAACTTCC 57 Novel Rattus norvegicus 81 AABR07059024.1 ENSRNOG00000057275 ENSRNOT00000078417 3 1 1 60 4 1983452 1983470 GCTATTCAGAGTCCTCCCT 58 1983410 1983433 GAATAACTTACTTTCCCAGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070581.1 ENSRNOG00000053544 ENSRNOT00000086040 2 1 1 80 8 75773186 75773205 GATTGCACTCAAGGCAAGAC 60 75773247 75774600 TGAACAGTGGAATTCCTCCA 59 Novel Rattus norvegicus 81 AABR07044551.1 ENSRNOG00000054555 ENSRNOT00000090014 2 1 1 106 20 10492179 10493148 GGTATCTGATCCCTGCCTC 59 10492091 10492112 GATATTTATAGGGCAGAGCAGC 59 Novel Rattus norvegicus 81 AABR07044570.1 ENSRNOG00000051612 ENSRNOT00000083597 1 1 1 82 20 10728056 10728163 AGTGGAGACAAGGTGATGC 60 10728206 10728227 GTTAATGAAGGTGATCACCAGC 60 Novel Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 1 2 2 80 17 62609738 62618037 CCAATATAAGGCTTGAACAGGA 58 62609679 62609700 TCAGAAGTTCTTCATCTTTCCC 58 Novel Rattus norvegicus 81 AABR07044631.1 ENSRNOG00000053588 ENSRNOT00000091531 1 1 1 80 20 14000326 14000345 CTCTTTCTTCACGGTCACCT 60 13999572 14000283 AGGTGCTCACACCATACTC 59 Novel Rattus norvegicus 81 AABR07044635.1 ENSRNOG00000058683 ENSRNOT00000084854 3 1 1 61 20 14046400 14046418 AAGAGGAAGGAAGCTCTGG 59 14045937 14045955 AAACCTTTCCCTTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723 1 1 2 81 17 62735303 62735321 GTTTAGCTCCCAGTCACGA 59 62734850 62735260 AAAGTCACGTTTCCAACTCTC 59 Novel Rattus norvegicus 81 AABR07044724.1 ENSRNOG00000056799 ENSRNOT00000079406 2 1 1 129 20 18437285 18437303 CTAAGCCTTGCTCCCTAGG 59 18435359 18437193 GTTACTGCCTGCACTTAGAG 58 Novel Rattus norvegicus 81 AABR07070801.2 ENSRNOG00000061652 ENSRNOT00000086475 2 1 1 80 8 84878586 84878607 CACATTTGTCTCCACATCTCAG 59 84878646 84878748 TTCTCACCTGTGAGTCTTAGC 60 Novel Rattus norvegicus 81 AABR07070802.1 ENSRNOG00000051520 ENSRNOT00000086693 2 1 1 106 8 84918628 84918646 CCAAACTCACTTCTGCTGG 59 84906550 84906569 TTTAGGAAGTGGTGTGAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070802.1 ENSRNOG00000051520 ENSRNOT00000086693 3 1 1 106 8 84918627 84918645 CAAACTCACTTCTGCTGGG 59 84906549 84906569 CTTTAGGAAGTGGTGTGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044794.1 ENSRNOG00000056554 ENSRNOT00000080565 1 1 1 84 20 20893584 20894530 TAGCACAGGGAAAGAAGGT 58 20894578 20894596 CTCTGAGACTCTAGCCGAG 58 Novel Rattus norvegicus 81 AABR07070834.1 ENSRNOG00000055417 ENSRNOT00000078167 1 1 1 80 8 86215803 86216326 CAATTACAGACAAGAGCTGAGG 59 86216367 86216385 GATGAGCAGCAAAGCTGTC 60 Novel Rattus norvegicus 81 AABR07070872.1 ENSRNOG00000061781 ENSRNOT00000090757 3 1 1 81 8 89173277 89173296 AAGTGAAACCAGGATTTGCT 58 89173339 89174172 TCTTCAACTCACATGGTCCA 59 Novel Rattus norvegicus 81 LOC103694645 ENSRNOG00000055663 ENSRNOT00000091347 2 1 1 88 4 33181880 33181898 ATCCAGTAAATGCTGCCTG 58 33181950 33197843 TGACTTCGTTCTTTGTGGG 58 Novel Rattus norvegicus 81 AABR07044805.2 ENSRNOG00000056976 ENSRNOT00000090472 3 1 1 81 20 21216963 21219173 ACAAGATACCCTACATAGTAGCAG 59 21219210 21219231 TATTGTGCTGAAACTCTTCCAC 59 Novel Rattus norvegicus 81 AABR07028792.1 ENSRNOG00000054565 ENSRNOT00000088124 3 1 1 93 17 86511674 86519499 TTGGTCAAAGCAAGGTATTTCC 60 86519553 86519571 GAAGTGGTCAGGCAAACAG 59 Novel Rattus norvegicus 81 AABR07044903.1 ENSRNOG00000057647 ENSRNOT00000087727 1 1 1 92 20 25963730 25963751 CCATCTAAAGAGCTATGGAGAG 58 25968732 25968751 ACGTGGGATCTATTTCAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071294.2 ENSRNOG00000060099 ENSRNOT00000078188 3 1 1 85 8 108093598 108093617 GATTGTTTCTAAGGGCCGAC 59 108093663 108096900 GATCAGAGACAGGGAGTAAGG 59 Novel Rattus norvegicus 81 AABR07060084.1 ENSRNOG00000058930 ENSRNOT00000091929 1 1 1 81 4 53255693 53271215 AGGCAAGGATTCAGCTCAG 60 53271258 53271278 GCAGGAAATCTGGTAGTTCAC 59 Novel Rattus norvegicus 81 AABR07060133.1 ENSRNOG00000054990 ENSRNOT00000090651 1 1 1 80 4 58408965 58420817 CCAAAGAGGTGTAATGCATCC 59 58408905 58408924 GGAAGTCTGATTTGCCAACC 60 Novel Rattus norvegicus 81 AABR07071374.1 ENSRNOG00000061212 ENSRNOT00000087863 3 1 1 84 8 112487989 112488259 AAGCTCAAGGCTAGTGACC 59 112487923 112487945 TCCACTGGTATAGATTCCATCTG 59 Novel Rattus norvegicus 81 AABR07008386.1 ENSRNOG00000058923 ENSRNOT00000077095 1 1 1 80 2 55309128 55309147 ATGGTGTTCTGTTCTTTGCC 59 55309189 55340509 GTGAAGATGTCTGTGGACAG 58 Novel Rattus norvegicus 81 AABR07060154.1 ENSRNOG00000057552 ENSRNOT00000089567 3 1 1 83 4 59383711 59383730 CCCAAGTGATGTCAGAAGAC 58 59383776 59401716 TTGCCCAACCTGTAAAGTG 58 Novel Rattus norvegicus 81 AABR07071392.1 ENSRNOG00000058516 ENSRNOT00000077214 2 1 1 82 8 113631635 113666799 GGGACTTAAGTACTCAACTCC 58 113631573 113631591 GAGGTCACTTCACCATTGG 58 Novel Rattus norvegicus 81 AABR07060222.1 ENSRNOG00000051677 ENSRNOT00000087972 2 1 1 87 4 63078376 63083914 GCTGAGATAAATGTGGACAAGG 60 63078310 63078332 CCTTTATAAGAGTTGCCATGGTC 60 Novel Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000082061 1 1 2 66 8 114039217 114039235 CAGAGTGCAGTTTCGATGG 59 114038313 114038333 GGGAGGAAGAAATGATTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008424.1 ENSRNOG00000056794 ENSRNOT00000085759 3 1 1 81 2 57943692 57944458 CTTTCTACAATGTCCGAACCTC 59 57943632 57943652 ACATCTGACAGCAGTAGATGG 60 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081263 2 1 3 92 2 59872789 59877547 GCCTAAAGGCAAAGACTTTCC 60 59877599 59877619 TTTCTTTCCGGTAGGTAGGAG 59 Novel Rattus norvegicus 81 AABR07060379.1 ENSRNOG00000060461 ENSRNOT00000080619 1 1 1 80 4 70483509 70483533 GATGTACCTTAAGTTCCTAGAAGAG 58 70480345 70483473 AATGCGTAGATGAACAACCTG 59 Novel Rattus norvegicus 81 AABR07071567.1 ENSRNOG00000053523 ENSRNOT00000083235 2 1 1 66 8 122328074 122328092 AGGGAGAGGAACACAAGTC 59 122326419 122328048 CCTAGAATCAGTGATCATCATGG 59 Novel DesignRelaxed Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 1 1 1 60 Y 2027507 2038688 ATGATGTATCCTGTCCTAGATTGAG 60 2038704 2038724 ACACAGGAAATCAGATGATCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043863.1 ENSRNOG00000057385 ENSRNOT00000090619 2 1 1 112 19 44739666 44739684 TTGGTGCCATCTGAATGGA 59 44738656 44739591 TTTCTGTTTCAGTGGCTAGC 59 Novel Rattus norvegicus 81 AABR07071622.1 ENSRNOG00000059167 ENSRNOT00000080854 1 1 1 80 8 124650275 124658986 TTACATGGAGAAGCTGTGAC 58 124650214 124650236 CTTCTGGTCTTCCTTACTTATCC 58 Novel Rattus norvegicus 81 AABR07043940.1 ENSRNOG00000052678 ENSRNOT00000085197 2 1 1 80 19 48958331 48958352 GAGAAATTCCTAAGAAGAGGCA 58 48958392 48960138 GTCTAACATCCCAGTCAGTG 58 Novel Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 1 1 1 61 19 52053601 52061445 TATTTACAAGCTGCGAGCC 58 52053558 52053576 CTCTTTCACAGCTGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 2 1 1 61 19 52053600 52061445 TATTTACAAGCTGCGAGCCT 60 52053558 52053576 CTCTTTCACAGCTGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008898.1 ENSRNOG00000059376 ENSRNOT00000091379 2 1 1 112 2 77667186 77667204 GCAGTAGAAGAGACCTGTG 57 77667280 77670353 ATGGTTTCATGCCTCTGTG 58 Novel Rattus norvegicus 81 AABR07071745.1 ENSRNOG00000059812 ENSRNOT00000085862 1 1 1 72 8 128885475 128885493 ATGGATGAATGGATGCGTG 58 128884848 128884868 GAAGGACAAATAAGGGTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058729.1 ENSRNOG00000051866 ENSRNOT00000085329 3 1 1 109 7 135390392 135390411 GGATGGATACTGATGACCTG 57 135389688 135390321 ATATTGTAGCAGCTGTGGTG 58 Novel Rattus norvegicus 81 AABR07044049.1 ENSRNOG00000056656 ENSRNOT00000090624 2 1 1 102 19 53801411 53926642 GTAACAAAGGTTACCTCAGCTC 59 53926705 53926723 TGGATAGACTGTCTGTGGG 58 Novel Rattus norvegicus 81 AABR07071753.1 ENSRNOG00000060074 ENSRNOT00000083759 3 1 1 66 8 129440015 129440034 GTATCTTGATGGCCTGTGAG 58 129439446 129439465 CTTCTGGCCTGTTAACTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071762.1 ENSRNOG00000055816 ENSRNOT00000082878 2 1 1 68 8 130139116 130145653 CCTTCTATTGTACATAAAGGCTGG 59 130145680 130145698 TTTCATCAGGGCTACCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000087127 1 1 2 80 7 137515605 137516068 TTATTGCCAGGCAGAGGAG 60 137515543 137515561 CTTTCTGGTGTCTCTGGCT 59 Novel Rattus norvegicus 81 AABR07044139.1 ENSRNOG00000057718 ENSRNOT00000086567 3 1 1 153 19 59408070 59408089 AGGGAGGCAACATAAATGTG 58 59408205 59408864 AATCTCACCGGAAGTCCTG 59 Novel Rattus norvegicus 81 AABR07044167.1 ENSRNOG00000051801 ENSRNOT00000091145 3 1 1 60 19 60942739 60942757 TGCACAGTCTCTTCTCTGG 59 60960582 60960602 CCTTTATCCATGAGTGACCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 1 1 1 65 2 87734877 87734895 AATAAGGAAACCTGCAGCG 59 87734924 87785150 TAGTTGAGTTGCAGAAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058955.2 ENSRNOG00000054057 ENSRNOT00000079399 2 1 1 80 7 145375694 145375712 CTCAGAGCCAGTCTGTCAG 60 145375754 145376717 CACCTATGTAGCTTCTCAGGA 59 Novel Rattus norvegicus 81 AABR07009634.1 ENSRNOG00000052367 ENSRNOT00000082636 3 1 1 72 2 106574307 106574325 TGTCAAGAGACAGAGGCTG 59 106570838 106570857 TCAATCAGGCCTTTCTTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009824.1 ENSRNOG00000056392 ENSRNOT00000083360 1 1 1 86 2 113907593 113907613 AGAACCAGAATTACTCCAGGA 58 113907660 113956749 AAACAAGACTCTGTGTAGCC 58 Novel Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 3 1 1 70 2 119558796 119560948 AGAATAATGTCCACTCCTTGG 58 119560978 119560998 CCTGCAGAAATATCCTTTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010107.2 ENSRNOG00000055621 ENSRNOT00000081435 3 1 1 62 2 123906648 123906666 CAGCTGAAAGGCTTCACAC 60 123907510 123907529 ACCAGTTAAGTCTGAAGGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010500.1 ENSRNOG00000059233 ENSRNOT00000080667 3 1 1 60 2 137453764 137467503 TCTCAATGGAAGACAGGTTCC 60 137453724 137453745 TCTGTCCCATATTTCTGTACCA 59 Novel DesignRelaxed Rattus norvegicus 81 AC111231.2 ENSRNOG00000058300 ENSRNOT00000078721 1 1 1 80 2 150259717 150259735 CCACTTGTGTCTCATGGTC 58 150259777 150262582 TTAGTGTGGTCTTAGAACACC 57 Novel Rattus norvegicus 81 AC111231.2 ENSRNOG00000058300 ENSRNOT00000078721 3 1 1 80 2 150259716 150259734 ACCACTTGTGTCTCATGGT 59 150259776 150262581 TAGTGTGGTCTTAGAACACCT 58 Novel Rattus norvegicus 81 AABR07011682.1 ENSRNOG00000058126 ENSRNOT00000080884 3 1 1 89 2 165931233 165931251 AACACAATGGTACGGTCCA 59 165917592 165931182 TGAGGAAAGATTTCGAGTCCC 60 Novel Rattus norvegicus 81 AABR07012051.2 ENSRNOG00000057323 ENSRNOT00000087787 2 1 1 83 2 183913601 183914890 TTTCAGCATACCAAAGCCTC 59 183913537 183913555 CCTCCAGGTGACTGATGTC 60 Novel Rattus norvegicus 81 AABR07012053.1 ENSRNOG00000053340 ENSRNOT00000083998 3 1 1 83 2 184138881 184144468 GAATCCAAGATGCCGATGG 59 184138816 184138836 AAGTAAGAGATCCTGCCACTG 60 Novel Rattus norvegicus 81 AABR07012195.1 ENSRNOG00000053596 ENSRNOT00000078105 2 1 1 60 2 190505926 190505947 CTCTTGGAATTGCCTTTATGGG 60 190505229 190505248 TCCAGTGAAGCTTCATTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014218.1 ENSRNOG00000057936 ENSRNOT00000086200 3 1 1 78 14 5618440 5618458 ATTTGATGAACCGTCTGGC 59 5650691 5650710 TAAGTGCCTTTCCATCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014275.1 ENSRNOG00000060602 ENSRNOT00000082202 1 1 1 80 14 7411957 7411978 TATGTCCATGATGTCATACAGG 58 7410783 7411917 GTCGTTAACCTTTACAAGCC 57 Novel Rattus norvegicus 81 AABR07014342.1 ENSRNOG00000061516 ENSRNOT00000086333 1 1 1 60 14 10297105 10297125 CAACCTCAGAGCATTTCAGAC 59 10296711 10296729 CTGCAGCCTGATTATGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072374.2 ENSRNOG00000057504 ENSRNOT00000090980 3 1 1 80 14 11453768 11453934 CTCAGAAGGATCAAGGTCCA 59 11453707 11453726 GGTAAATGTCAGACACCAGG 58 Novel Rattus norvegicus 81 AABR07012728.1 ENSRNOG00000053048 ENSRNOT00000079741 2 1 1 148 2 204033588 204033606 TGATGAAATCAGTTCGGGC 58 204033718 204033841 TTTAGATCAGGGCATGCTG 58 Novel Rattus norvegicus 81 AABR07012943.1 ENSRNOG00000057573 ENSRNOT00000091861 3 1 1 93 2 216061623 216062300 ACTCAACTGTCTGCATAACTC 58 216062354 216062373 GCTCTTTCTGTACTACAGCA 57 Novel Rattus norvegicus 81 AABR07013653.1 ENSRNOG00000059088 ENSRNOT00000090535 1 1 1 80 2 248544276 248545255 CTCTTATCCTTCAGGAGCGA 59 248545296 248545316 TCTGAATCTCTTTCTCATGCC 58 Novel Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 3 1 1 62 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249514717 249515169 CAATTTCAGCCTCCATCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013698.1 ENSRNOG00000052331 ENSRNOT00000087623 1 1 1 80 2 251179689 251180988 GACTCTACGGCTTTACCCA 59 251179627 251179646 AGGAAGTTGGGTACTGTTCC 59 Novel Rattus norvegicus 81 AABR07013746.1 ENSRNOG00000059921 ENSRNOT00000082882 1 1 1 90 2 254228390 254249402 CTACTCATGTAGTATTGCTATGAGG 59 254249450 254249468 TTCTCAAGGAGCGAAGTCC 59 Novel Rattus norvegicus 81 AABR07013764.1 ENSRNOG00000053817 ENSRNOT00000090223 2 1 1 80 2 255480331 255480352 TCACTGTGACTTTAACAGAGGA 59 255476859 255480292 GCTTTCTCCATAGACTTCCTG 58 Novel Rattus norvegicus 81 AABR07013764.1 ENSRNOG00000053817 ENSRNOT00000090223 3 1 1 80 2 255480332 255480353 ATCACTGTGACTTTAACAGAGG 58 255476860 255480293 CTTTCTCCATAGACTTCCTGG 58 Novel Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 2 1 1 63 11 43415653 43415672 CTCCTGTAATGACCCTTCTC 57 43415702 43415720 GAATACCTGGATCGAGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 2 1 1 60 8 72904231 72904249 CTTCCCATGACCTCATCAG 57 72904272 72904293 AAAGAATTTGTGGTGAGAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000014713 2 1 4 80 3 140222138 140225454 CATGCATCTCTGAAGATGGT 58 140225628 140225646 CAAAGTCATCCTCGTCCAC 58 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 3 1 1 62 1 165559986 165560004 AGCTCAAGGATGCAGTCTG 60 165559940 165559961 AGATAAGTAGGTCCTCTTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000051874 ENSRNOT00000077463 2 1 1 70 17 28020952 28020970 CTTATCCATTGCACTCCGG 58 28020900 28020918 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005031.1 ENSRNOG00000036293 ENSRNOT00000054415 1 1 1 61 1 176078604 176078622 ATCTCTGGGCGAGTATCTC 58 176078561 176078579 AAGGCACAGAGGCTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 3 1 1 63 2 196582949 196582967 GAAGAGGAGGAAGAGGAGG 58 196582591 196582609 CTTCCTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053149 ENSRNOT00000082391 1 1 1 63 4 139837335 139837354 TGTCTGCTGTATCACATGTG 58 139837377 139837398 CTCAGTATAGACACAGACTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094811.1 ENSRNOG00000047066 ENSRNOT00000072177 3 1 1 60 12 25262545 25262565 CTGAACTCAGAGATCCTCCTG 59 25262587 25262605 GTAGCTCGTGCCTTTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044267 ENSRNOT00000069534 1 1 1 60 4 8007760 8007781 TTCAGCATTTACTTCTCTGACC 59 8007802 8007820 TTGAGTACTAACCAGGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005838.1 ENSRNOG00000020446 ENSRNOT00000027709 2 1 1 60 1 202904636 202904657 CTTTATGTGCACGCTTTAAGAC 59 202904677 202904696 CAAATGCAGCTCTTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076937 1 1 3 83 X 65559233 65559251 GAAGAATACGCTACGCCCT 60 65455501 65559186 CTGTGACCATCCTGTACCC 60 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000041963 3 1 3 146 X 65413513 65423968 GATTCTGATCATTTCAGTGAGAGTC 60 65412718 65412737 ACATATTGGTGTCCCATCCA 59 Novel Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 1 1 1 60 10 83536083 83536102 CTTGGCATTAGTCACTTGGG 59 83536127 83536145 AGCCATGTACCAACATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008443.1 ENSRNOG00000059568 ENSRNOT00000081192 3 1 1 81 2 58679134 58681488 GACAAGAGGTACAAGTCTGC 58 58681532 58681550 CCTCAAGTCTCTGGGAAGG 59 Novel Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 1 1 1 88 13 77850595 77850613 AGATGCCATTTGGAAGCTG 59 77876040 77876058 GAAACTCAGATGCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006111.1 ENSRNOG00000020409 ENSRNOT00000027660 1 1 1 80 1 220610810 220610830 ACCAGATACAGCCCTATCC 58 220610874 220610892 CATTGTCTTTCCGGGTCAC 59 Novel Rattus norvegicus 81 AABR07042565.1 ENSRNOG00000052151 ENSRNOT00000077592 2 1 1 80 19 33734 34017 TGGCTATTAACAAGGTCTTCGT 60 33675 33694 CCAACAACTCTTTGGGATGC 60 Novel Rattus norvegicus 81 AC123253.2 ENSRNOG00000052774 ENSRNOT00000090011 1 1 1 80 12 7741184 7741206 AGATTTCACCTCACATGCG 58 7741122 7741141 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000083678 3 1 3 82 5 164954160 164954178 TTTGGATAAGGAACACCGC 58 164954223 164954885 GGGAGTCTGAATTGATGGAC 58 Novel Rattus norvegicus 81 SNORA64 ENSRNOG00000059404 ENSRNOT00000081773 1 1 1 61 10 14089024 14089042 TTTACCCGTGTGACTTTCG 58 14089067 14089085 AATCCCAAGTACTGGAGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061780.1 ENSRNOG00000054430 ENSRNOT00000081511 3 1 1 60 4 143911939 143911959 CTGTGAGTGTCATTAAAGCTG 57 143911981 143911999 GACTTGGTGACTTTGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119462.1 ENSRNOG00000058599 ENSRNOT00000081209 3 1 1 60 10 86580562 86580582 CATGCTCACACTCATACACTC 59 86580598 86580622 GTGTGAATGTGTATAAGTGTGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004765.1 ENSRNOG00000056160 ENSRNOT00000088468 1 1 1 60 1 155281294 155281314 ATCAAGTGTAGAAAGCGTGTG 59 155281336 155281354 AGGAAAGCATGGAGTGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.1 ENSRNOG00000046092 ENSRNOT00000073893 3 1 1 60 1 121210586 121210605 GCTGCTGGTTATATTCCAGG 59 121210545 121210563 TTTAACAGTCGGGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060127 ENSRNOT00000087258 2 1 1 60 2 228776231 228776249 TTGGATCATGTCTCACGTC 57 228776272 228776291 CATAGCCTTTCTCCACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061462 ENSRNOT00000079397 2 1 1 60 2 169730533 169730554 GATACAGAGAAGATTAGCGTGG 59 169730575 169730593 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 3 1 1 74 7 34484784 34484802 TGAATGGAAGGCATAGCGT 60 34484842 34484860 GGTAAGGAGGATGAGCACC 60 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077503 3 1 4 98 9 88309251 88309269 GTGCACAAGGATCAACAGG 59 88308031 88308242 CAGGATCTCCCTTCATCCC 59 Novel Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 1 2 2 100 2 208383487 208545141 CTTTCACCTGGCACTTCAG 59 208550238 208550258 ACACAAACGATCAGAATGGAC 59 Novel Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 3 1 1 65 15 31951125 31951143 CTCTGGCTTCAACTGAGTG 58 31951364 31951382 ACTGAGTGATTCTGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000090367 1 1 2 83 2 257514476 257514494 AGACTGTGGACGAGTTTGG 60 257505622 257514431 CAAGGATTAGCTCTGTTGCTG 59 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370 2 1 2 80 2 257507404 257507424 TACGAAGAAGCTATGCATCTG 58 257507267 257507365 GTAAATACATTCTCTGGAGCGA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054095 ENSRNOT00000090578 3 1 1 60 13 54317126 54317144 GTGTCATTTGGTGGCAGAG 59 54317084 54317102 TCAGATGCTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054366 ENSRNOT00000082041 3 1 1 61 13 97260090 97260113 CGATACAGAAGAGATTAGCATGAC 59 97260052 97260070 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034781 ENSRNOT00000052904 1 1 1 60 X 83783956 83783977 TACACTGATCTCGTCTGATCTC 59 83783997 83784016 CATCCAAGTACTAACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 1 2 2 82 6 139784132 139911804 TTTGAAAGGTGTCCAGTGTG 59 139784069 139784087 AGGAGAGTTTCAGGGACCT 60 Novel Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 2 2 2 60 6 143194561 143194581 CCAAGCATTCCTCAAGATCAC 59 143194521 143194540 AGCACAGTAGTATGTGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 3 1 1 65 4 164253018 164253036 CTAAGGAGACTCAAAGGCC 57 164250686 164250704 TAGCAATCACAGTGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000088581 2 1 6 110 10 74871647 74877552 TGGATGACAAGGAGTACGTG 60 74877625 74878028 CCAGACCAGATTCTCCTGC 60 Novel Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 1 1 1 65 1 136075099 136075117 CACCTAGACTTGGTGTGGT 59 136075144 136075165 AGTAATTTAGGCAGAAGGTACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 1 1 1 60 5 7577078 7577099 ATGATCTCATCTTGGAAAGCAG 59 7577473 7577491 TGTTCCTCAGAACATTGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 3 1 1 83 10 78340590 78340611 GATGAAGATAACCAATAGCCCA 58 78339929 78339947 AGAGTAATGCACTGTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453 2 1 2 80 10 93156877 93158302 CTACTACAGGAGGAGAGGTG 58 93158345 93158363 ATTCGCTGTCTGTAAGCTC 58 Novel Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 3 1 1 67 15 12756855 12756874 CGTGATAAGGTCAATGAGGA 57 12792289 12792307 TTCATGGAGCTGTTGTACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 2 1 1 65 4 181524898 181524916 ATGTCGGTGACATCCACAG 60 181524176 181524194 GCCTCTTCTCTTGCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 2 2 2 81 6 37195834 37199499 AGGGACAAGAACAGGATGG 59 37199543 37199562 TTCCCTGAGAAGTGAATTGC 58 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 2 1 1 60 18 64304007 64304025 CTGTCTCCAGAAGTCTTGC 58 64309476 64309494 TGTGCCTAGCACTTTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 3 1 1 74 18 80294331 80294350 GACTCTGGACTTCTACCCTC 59 80300885 80300903 GTGAGTGACTTCTTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 3 1 1 61 3 30248552 30248572 CAATTAAACACCATGTGACCC 58 30247189 30247209 ACTTCCTATGGAATGGATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 3 1 1 60 3 33949969 33949987 CCTGATGCTCAAGAGTCCC 60 33946843 33946865 GAATGATTAGTTGTCACCACAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 3 1 1 60 13 80460432 80460450 GGTTGTGACGTTCAGATCC 59 80457718 80457736 ACTAGGAGTCCAGTCAGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 2 1 1 60 3 62622695 62622715 ACTGATGCTTCTTCATGAGAC 58 62621877 62621895 TGAACACTTCGTTCTTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 2 1 1 60 13 90238723 90238741 AGCAACAGCAAGGTAACTG 58 90221456 90221475 ATTGGGAGCTCATTCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 3 1 1 76 1 124929412 124929432 TTCCTTGTCTCATCCTCTGTC 59 124929093 124929111 GTGGGTACACATCCATCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 2 1 1 70 6 133642479 133642498 TCCATCCTGGATAGTGAACC 59 133632959 133632977 TTTCTACCCAGGCAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537 1 1 2 80 3 108640509 108640529 TCCGTCGTTCATTCTTTAAGC 59 108640274 108640468 TCATTTGCTTCCTGACATGC 59 Novel Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 3 1 1 68 3 109814065 109814083 GTCCTGCTGGGATTAGTGG 60 109811958 109811977 GAAGCAGAGACAAAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 2 1 1 75 9 18820390 18820408 TCACAGGCAGATGAATGGA 59 18818492 18818510 ATGTTCTGTGGACCCACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 2 1 1 62 3 125025753 125025773 GCTTACACAGCTGTTCTACAG 59 125023185 125023203 GGGACAACTTTGTGTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 3 1 1 60 12 22528087 22528106 AAGAAAGCGACCATGAACTG 59 22512561 22512579 TCTCAACTTCTGTTGACCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 2 2 2 95 3 154850625 154850643 GATTACAGCTTCTGCAGCA 58 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 2 1 1 69 3 160964928 160964946 GAGAGGCTTGGAAATGGAG 58 160972996 160973014 CAGTCAGTGCTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 1 1 1 60 1 229097646 229097664 GTCACCTTGTTCAAGGAGC 59 229100221 229100239 TTCCACCATATCCACCGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 2 1 1 77 X 77957182 77957200 CTCCAGCCCTTCATCTCTG 60 77956500 77956518 TTACCAAGAGGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 3 1 1 78 9 113800847 113800865 GAGCAAGTGCCTCATTCAG 59 113788475 113788493 CAGCATGCACTCCTTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 2 1 1 67 1 259107321 259107342 GCAAGAACTGGAATTACTTGTG 58 259111310 259111331 CAGACCTTTCGTTCTTCATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 3 1 1 75 1 259107321 259107342 GCAAGAACTGGAATTACTTGTG 58 259111321 259111339 CTCCTCTCCAGACCTTTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 3 1 1 84 7 38667460 38667479 TACAGCTCGCAACAATACCA 60 38679375 38679393 GTGTTGTTGGTCTCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 1 2 3 104 8 23492941 23495981 CGAACACAAGACCAAGAGAC 59 23496047 23509001 TCCTTTCAACCTTGCTTCTG 58 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 2 1 1 69 10 11306707 11306725 GAGAGCAGCCATGAAACAG 59 11308051 11308069 AGATTTCAGGAAGGAGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 2 1 1 95 8 53832027 53832045 CACAGCCTCTCAACTTCAG 58 53837430 53837448 TCATATGTTTGTCTCGGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 3 1 1 115 20 5318626 5318645 GTCTTGTGTTTCAGGGAGTC 59 5317911 5317929 CACCTGAGTTCCAGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 3 1 1 60 2 32310182 32310201 TAGGTCTCACCATCTGTAGC 58 32310420 32310439 GAGTTCTGTTCTTCTGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 1 1 1 60 8 89236957 89236975 CCACATTCACCAGGATCTC 58 89235851 89235872 GTTATTCTCATCTGACTGTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 3 1 1 69 4 44646938 44646956 CCAGCAGTGTGAAAGACAG 59 44639574 44639593 GTAATGACCAGACTGGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 3 1 1 60 19 48572981 48573000 AATGGAGTTTCTGCTTCCTG 58 48569124 48569142 GAGGAAGTCATCTGGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 1 1 1 66 2 150686754 150686774 CAACCTCCATGGTCTAATCTG 58 150689274 150689292 GAACGTCCCTATCATGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 1 2 2 108 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311100 156311118 GGTAGGGAAGGGAAAGCTG 60 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 3 1 1 63 2 162021722 162021740 CCTTGTAGCCCAGAAAGCT 60 162022791 162022809 CTGGGTTTGAAGAGCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-co1 ENSRNOG00000034234 ENSRNOT00000050156 1 1 1 60 MT 6625 6644 GGGATACCTCGTCGTTACTC 60 6664 6685 AGGAGACTGTATTTCATGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-atp8 ENSRNOG00000033299 ENSRNOT00000046201 1 1 1 60 MT 7760 7778 GCCACAACTAGACACATCC 58 7799 7820 AAATAGTGTGGCTATTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3d19 ENSRNOG00000011752 ENSRNOT00000015802 1 1 1 80 2 185418469 185418489 TGGTACAGAGGGAAATGTAGG 59 185418528 185420340 TCCTTCTGGAATATCAACAACG 59 NA Rattus norvegicus 81 Dmbx1 ENSRNOG00000010835 ENSRNOT00000057055 1 1 1 83 5 134772748 134772766 TCATTACCCAGACGTGGTG 59 134772473 134772701 TTCTTGAACCACACCTGCA 60 NA Rattus norvegicus 81 LOC100912421 ENSRNOG00000031027 ENSRNOT00000049593 3 1 1 60 5 137515306 137515325 GTATGTTGCTATCTGCCACC 59 137515265 137515283 GAGACACATCCCACGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf180 ENSRNOG00000043329 ENSRNOT00000066069 3 1 1 80 2 35853338 35853357 GAGAGGAACAAGTTGAGGAC 58 35850671 35853296 TCCTGAGTATTTACCCTGCT 58 NA Rattus norvegicus 81 Pomgnt1 ENSRNOG00000023455 ENSRNOT00000035312 3 1 1 80 5 135016399 135016418 GGCCTGTGGAGATTATTTCG 59 135016459 135016566 TGGCTTCTTCACTGAGTAAGG 60 NA Rattus norvegicus 81 Sypl2 ENSRNOG00000019780 ENSRNOT00000026883 2 1 1 82 2 211009025 211010242 TCCCTTCAGGTTGTACCAG 59 211008961 211008979 CTCCCATGAGGTTCATGGT 59 NA Rattus norvegicus 81 Dad1 ENSRNOG00000009090 ENSRNOT00000012233 3 1 1 105 15 32887760 32887778 CAGTTCGGCTACTGTCTCC 60 32876288 32887692 GTATTCTCAAGCAAACCGCT 59 NA Rattus norvegicus 81 Mir3597-2 ENSRNOG00000035628 ENSRNOT00000053751 2 1 1 67 2 11884716 11884739 CGGTTATCTAGCTTTATGAAGACC 59 11884672 11884692 GAAGCGAGTTGTTATCTTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prmt6 ENSRNOG00000017187 ENSRNOT00000023079 1 1 1 216 2 213177266 213177284 TTTGCCATGGAGGACTGAG 60 213175150 213175168 TCATGTATAGCCAAGGCGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ankrd34a ENSRNOG00000033741 ENSRNOT00000043535 3 1 1 80 2 198721760 198722346 GGACATTCAGGGATAGGCT 59 198722386 198722408 CCGAAGATATCTAGGAGTATGGA 58 NA InUTR Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000032601 2 1 2 81 15 36356088 36470696 CATGCTGTTAAAGCTGAAGAG 58 36356027 36356046 CACTTTGAAGTTGCTTCTGG 58 NA Rattus norvegicus 81 Gulo ENSRNOG00000016648 ENSRNOT00000022702 3 1 1 80 15 42672716 42674502 CATTATGTACAGGCCCTATGGA 60 42672657 42672679 CCAAACTTCTTCATGATGGTCTC 60 NA Rattus norvegicus 81 Nadk ENSRNOG00000016936 ENSRNOT00000022900 2 1 1 81 5 173012416 173012434 CATGGTTACACCCATCTGC 59 173012477 173013081 CAGCATAATCTTCAGCTCGAC 59 NA Rattus norvegicus 81 Nadk ENSRNOG00000016936 ENSRNOT00000022900 3 1 1 81 5 173012416 173012434 CATGGTTACACCCATCTGC 59 173012478 173013081 CAGCATAATCTTCAGCTCGA 58 NA Rattus norvegicus 81 Ncr3 ENSRNOG00000000854 ENSRNOT00000001139 2 1 1 86 20 5175236 5175255 GAATCTACGTGTGCAGAGTG 59 5175304 5175425 GAGGAGGCTCTTTCTCCAC 60 NA Rattus norvegicus 81 Ankrd55 ENSRNOG00000013555 ENSRNOT00000018438 2 1 1 80 2 44096663 44127701 ATCAGCACAAAGGTGACTC 58 44127743 44127763 GAGAGTTGACATCTCCATTCG 59 NA Rattus norvegicus 81 Krtap26-1 ENSRNOG00000048212 ENSRNOT00000074102 1 1 1 60 11 28614108 28614126 CAACTGTCAAGACCACACC 59 28614066 28614086 GATAGGTTCTGCAAAGGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srpk1 ENSRNOG00000000511 ENSRNOT00000000612 3 1 1 80 20 5850265 5850286 TGATCCAAATGGAGAAATGGTC 59 5844532 5850225 ACCATGCAGATATGTGTTCC 58 NA Rattus norvegicus 81 Mir582 ENSRNOG00000040434 ENSRNOT00000062187 3 1 1 62 2 40863756 40863776 TGGATACAGTTGTTCAACCAG 58 40863799 40863818 GGGTTCAGTTGTTCAACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561841 ENSRNOG00000029493 ENSRNOT00000042248 2 1 1 60 2 138489680 138489699 AAACTTTCGTGCCTGTTACC 59 138489719 138489740 TAGTTCTCATCCACATTGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl18 ENSRNOG00000020880 ENSRNOT00000056141 3 1 1 97 8 118675868 118679739 GAATAGCAAGCGAAGTGCC 60 118675789 118675807 TCTCCACAGAGTTGAGGGA 60 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000079955,ENSRNOT00000066940 3 2 2 62 11 35097933 35097951 GTCATCCTGGAGGGAATGG 60 35026282 35026300 GATGTAGGAGCTTCGAGCT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1566387 ENSRNOG00000013698 ENSRNOT00000018322 3 1 1 60 X 122314227 122314246 ACAAACCGTAAAGGAAGGAG 58 122314268 122314287 GCATTTATCATAGCCAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr232 ENSRNOG00000049748 ENSRNOT00000047839 1 1 1 60 1 171195835 171195859 CAGCGATTATTACCTATATGACTCC 59 171195799 171195817 ACAGACACCAGTTTCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912106 ENSRNOG00000050827 ENSRNOT00000074804 2 1 1 92 1 91962678 91962696 TTAGCACTTGTGAAGCCTG 58 91961536 91962622 TTCTGACACCTTCCCACTC 59 NA Rattus norvegicus 81 Slc35a3 ENSRNOG00000061832 ENSRNOT00000085122 1 1 1 80 2 219725371 219725390 CTTCTACAGCAGTGGTTGTG 59 219719549 219725334 CACTACACTTACTGTCTTTGTAGAC 59 NA Rattus norvegicus 81 Slc35a3 ENSRNOG00000061832 ENSRNOT00000085122 3 1 1 81 2 219719545 219725327 AAGACAGTAAGTGTAGTGTGAG 58 219719485 219719503 AGCTTCAGTGTTTCCATGG 58 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 2 2 2 80 1 282572326 282572344 CAGAAGCTCTGATACGCTG 58 282572385 282572682 CAGGAATCATCTTGAAGACCTG 59 NA Rattus norvegicus 81 Piga ENSRNOG00000003554 ENSRNOT00000044103 3 1 1 81 X 31798978 31798997 AACATGTATCGCTCGGAGAG 60 31798187 31798936 CAGTGTGGACTTGAATCTTGG 59 NA InUTR Rattus norvegicus 81 Hrc ENSRNOG00000020719 ENSRNOT00000028116 1 1 1 80 1 101327375 101327396 CGATGTAGTGAATGTGAAAGCT 59 101327437 101327652 GAATTGGCAGTGCTGACAC 60 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095,ENSRNOT00000091612 2 3 3 81 15 42661445 42661464 ATAACTCCACAGGATGCCTG 60 42661508 42664200 TTGTTGGTCGAACAGTCCA 60 NA Rattus norvegicus 81 AC139873.3 ENSRNOG00000055159 ENSRNOT00000047131 3 1 1 60 3 73716983 73717002 TGGTCACTGTCTTCTATGGG 59 73716942 73716960 GAATGACTGGATTTGGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Islr ENSRNOG00000048924 ENSRNOT00000075476 3 1 1 60 8 62948147 62948166 CCCACTTGCAGATCAATCAC 59 62948106 62948124 GTCTTGAACCACACGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691368 ENSRNOG00000045847 ENSRNOT00000051827 3 1 1 60 3 102457168 102457189 TGTACCCAAGATGATTTCTGAC 58 102457209 102457228 ACAACTGTGGAATGAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem219 ENSRNOG00000020000 ENSRNOT00000027094 3 1 1 94 1 198333171 198333189 GAACTTCGGAGGTGATCCA 59 198328877 198333119 CCTCTTCTGGTATGTCTTTAAATCC 59 NA Rattus norvegicus 81 Rn60_X_0551.2 ENSRNOG00000028179 ENSRNOT00000050661 3 1 1 60 X 54806392 54806410 GACATCCTCAAGAAAGCCT 57 54806350 54806368 TTTCCTTCACCTCAAGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx2-3 ENSRNOG00000016656 ENSRNOT00000054714 2 1 1 61 1 263367576 263367594 AAGGAGCAAGAAGAGGAGG 59 263369101 263369119 GACTTCTTCAACTGGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr358 ENSRNOG00000059089 ENSRNOT00000091024 2 1 1 60 1 230079783 230079801 GAAATGTGGGCATGATCCT 58 230079741 230079760 AAGTACATGGGAGTGTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690235 ENSRNOG00000024200 ENSRNOT00000033223 2 1 1 60 8 16485571 16485589 GCTCCCGTTTGATGATTCC 59 16485529 16485548 ATACTTCCCTGACACAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 3 2 2 105 1 222244594 222245105 AAAGAGCTACACCCTGACC 59 222244507 222244525 TACGACGACTTTCCTCACG 60 NA DesignNoJunction Rattus norvegicus 81 Cadps ENSRNOG00000008570 ENSRNOT00000012153 2 1 1 80 15 15642644 15642663 GATGGAGTCCTCAATTGCAC 59 15642705 15654519 GTACCCGATCCGTTATTGAC 58 NA Rattus norvegicus 81 Mir3578 ENSRNOG00000035497 ENSRNOT00000053620 3 1 1 60 6 133893763 133893783 AAGCTGAGCATTGATACTGAG 58 133893723 133893741 TTCGCTTAGCTGACTTCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Macc1 ENSRNOG00000037436 ENSRNOT00000056654 1 1 1 80 6 147380649 147380668 TCACTAAGCATCAGATGCAG 58 147380710 147392091 GTTTCCACATTGTCTCTGCT 59 NA Rattus norvegicus 81 Cyp7a1 ENSRNOG00000009488 ENSRNOT00000012819 1 1 1 80 5 19366458 19368329 AATAAGGAGAAGGAAAGCTGG 58 19366398 19366418 GATCCAAATTTCAGAGCACAG 58 NA Rattus norvegicus 81 Mcpt8l2 ENSRNOG00000049096 ENSRNOT00000073555 2 1 1 98 15 34623319 34623337 AACACCCAGGTCATCTCTG 59 34623016 34623257 TTTGCGTTCCAACTTCAGG 59 NA Rattus norvegicus 81 Acbd5 ENSRNOG00000017642 ENSRNOT00000076964 3 1 1 80 17 89904436 89904457 CTGACAAGTGACTCAGATAGTG 58 89900395 89904400 ATCACCACCTAAGTAATACTCCTC 59 NA Rattus norvegicus 81 Abhd17b ENSRNOG00000012514 ENSRNOT00000044486 2 1 1 81 1 239293564 239293583 GTTCTGGAAAGCCAACAGAG 59 239293627 239297833 CGAATGCCGTATCTTGTCC 59 NA Rattus norvegicus 81 Dync1i1 ENSRNOG00000009700 ENSRNOT00000013184 1 1 1 80 4 31009896 31009918 GTCAGTTCTATGATGAGCATTGG 60 31009958 31017514 CCATCAGCTCAGGGTACTG 60 NA Rattus norvegicus 81 Dync1i1 ENSRNOG00000009700 ENSRNOT00000013184 2 1 1 80 4 31063355 31066757 GTCGTCATGGAAGCAAAGC 60 31066801 31066819 CCATGTGGCAGTTAATGCC 60 NA Rattus norvegicus 81 Olr126 ENSRNOG00000029612 ENSRNOT00000043967 1 1 1 60 1 168883407 168883425 AAAGAGCCTCCACATACCC 59 168883365 168883383 GACAATATCCGTGACTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0616.3 ENSRNOG00000032361 ENSRNOT00000051547 3 1 1 80 X 60929656 60929676 CACCTTTCTGGAACACATGTG 60 60929718 60929748 ACTAGGAAGCAGATGCCAG 59 NA Rattus norvegicus 81 Abca13 ENSRNOG00000025645 ENSRNOT00000035612 2 1 1 80 14 89572144 89572162 TTGACTTGGATGGTGTCTG 57 89572204 89572603 TCGCATGTACTCTTCTATCTG 57 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 1 3 3 80 9 94940170 94942937 CAAGATGTAGGGAAGAGCTG 58 94942979 94942998 CTTGTCCTCTTCAGCATCTG 58 NA Rattus norvegicus 81 Slc25a18 ENSRNOG00000042731 ENSRNOT00000015560 2 1 1 85 4 153349078 153349096 AGACTCGAATCCAGACCCT 60 153349145 153349592 CTGGGTCCAGAGTTTCCTG 60 NA Rattus norvegicus 81 Pnma2 ENSRNOG00000009815 ENSRNOT00000013001 3 1 1 80 15 43586282 43586579 ACATAAACAGGAGTCCTTGC 58 43586621 43586640 TAATCAGTGGGTAGGTGGTG 59 NA InUTR Rattus norvegicus 81 LOC100359679 ENSRNOG00000024838 ENSRNOT00000034385 2 1 1 80 18 27383302 27390895 TGTAGTAACTCGAGTGACCT 58 27383241 27383259 CCAGACTTGCAGAAGAGTC 58 NA Rattus norvegicus 81 AABR07016566.1 ENSRNOG00000051648 ENSRNOT00000088356 3 1 1 92 14 104396400 104396419 AATTTCAGCACCCACATGAC 59 104396473 104397895 CATCTGTGTTGCTACAGAGG 58 NA Rattus norvegicus 81 Wnt8a ENSRNOG00000020157 ENSRNOT00000064574 1 1 1 91 18 27333382 27334034 ATAATGGGAAAGCAGGTGG 58 27334089 27334107 GTCCACAAAGAGTCTGGAG 58 NA Rattus norvegicus 81 Gpatch11 ENSRNOG00000025317 ENSRNOT00000034919 1 1 1 80 6 1418615 1418633 AACTGCAGATCCTCACTGG 59 1418672 1420078 CTTCTTTATCTTCATAGGCTGTCC 59 NA Rattus norvegicus 81 Insrr ENSRNOG00000057702 ENSRNOT00000080693 1 1 1 80 2 187174744 187174762 CTACACCATGCCATCACCA 60 187174972 187175068 CCTCTCCGAATCCCTTTGG 60 NA Rattus norvegicus 81 Nrn1 ENSRNOG00000050767 ENSRNOT00000073967 3 1 1 96 17 27969343 27969361 GACTGTTTGCTCAAGCTGG 60 27926264 27969284 AATCCTCCCAGTATGTGCAC 60 NA Rattus norvegicus 81 Defb42 ENSRNOG00000038762 ENSRNOT00000059215 3 1 1 69 15 46166313 46166332 AGACTGTATCTGCTCCTCTC 58 46159702 46166283 CTAAACCACTTCTAACTCGGG 58 NA DesignRelaxed Rattus norvegicus 81 Glce ENSRNOG00000025372 ENSRNOT00000038641 3 1 1 81 8 67010375 67020008 ACAGTTTATTGCTCCAGAAGC 59 67010314 67010337 GAGGTCGAATGAGATAATGAAGTC 59 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000036996 2 1 2 80 6 55700056 55700075 CCCAGTATAACCTCTACCGC 60 55698772 55700014 TCGCTGTAATTTCCTTCCGA 60 NA Rattus norvegicus 81 Dscam ENSRNOG00000027992 ENSRNOT00000002215 1 1 1 80 11 37062344 37064128 TGGATGAAGGATAGTAACGGG 59 37062284 37062302 AACGAAACTCCCATTGCTG 59 NA Rattus norvegicus 81 Fam98b ENSRNOG00000005366 ENSRNOT00000034950 1 1 1 80 3 108976599 108977226 GATGGTCGCTTAAAGATTCCT 58 108977265 108977286 TGAAAGACCATAGGTAACTCTG 57 NA Rattus norvegicus 81 Fndc4 ENSRNOG00000051056 ENSRNOT00000076105 1 1 1 66 6 26387993 26388011 TGAACAGAGTCCTCAGGGA 60 26388263 26388281 AATGGTGTTGATGGATGGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100359656 ENSRNOG00000029090 ENSRNOT00000051511 1 1 1 60 X 77809042 77809061 AAGGAATGTTAGATGTGCCA 57 77809083 77809102 CTCGATACTTACAACAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2d1b ENSRNOG00000031599 ENSRNOT00000048692 1 1 1 94 13 88617069 88621062 AGGATACAGACTGAGGCTG 58 88621120 88621138 ACCACCAGTCCTTGATCTG 59 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 3 2 3 70 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383832 78383850 CAGATTTACCCACCAGGAG 57 NA DesignRelaxed Rattus norvegicus 81 Mir871 ENSRNOG00000041334 ENSRNOT00000063087 3 1 1 60 X 151287835 151287853 TATTCAGATTGGTGCCGGT 59 151287793 151287814 TTACATTATCCAGTATGGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hexa ENSRNOG00000010252 ENSRNOT00000013747 3 1 1 80 8 64341285 64341307 CCCTAACCATTAATGATGACCAG 59 64341345 64342696 GACTGAAAGTCTCCAGACCTC 60 NA Rattus norvegicus 81 Clca4l ENSRNOG00000036877 ENSRNOT00000055362 3 1 1 80 2 250802689 250802906 AGAATCATATGACCAAGCAGAC 58 250802630 250802650 CCATATTGAAGGGTGTAGGGA 59 NA Rattus norvegicus 81 Tmem120a ENSRNOG00000001441 ENSRNOT00000001960 3 1 1 80 12 23989982 23991677 TCCAAGGTATCCAGGAAACAC 60 23991717 23991737 AGTTTGTACAGTTGTCCTGGA 59 NA Rattus norvegicus 81 Sall1 ENSRNOG00000013907 ENSRNOT00000018629 3 1 1 98 19 23402312 23403444 ATCTGAAGGTCCACATGGG 59 23403504 23403524 TCCCTCCTAGAAATGTCATGG 59 NA Rattus norvegicus 81 Naa40 ENSRNOG00000021179 ENSRNOT00000028759 3 1 1 80 1 222482173 222482192 AACAATTCCATCCCAGTTGC 59 222481971 222482132 CACTTCATAGCAGTACAGGAC 58 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587,ENSRNOT00000036781,ENSRNOT00000071919 1 3 3 80 15 39718474 39720901 CTAGGAGAGCTCACGAGGA 60 39718412 39718434 CTATCACATCTGATTCAGTCAGC 59 NA Rattus norvegicus 81 Ephb6 ENSRNOG00000014367 ENSRNOT00000019720 1 1 1 80 4 70917321 70917340 GCATACTCATGTGGGAAGTG 59 70917380 70917630 CTATCGCATTTAGTACCTCCTG 58 NA Rattus norvegicus 81 Prl7a3 ENSRNOG00000016616 ENSRNOT00000022381 1 1 1 80 17 39034649 39034667 GCCTGTTTGATACTGCCAC 59 39034710 39035446 CGTTGACTGCATACATCCTG 59 NA Rattus norvegicus 81 Hgf ENSRNOG00000007027 ENSRNOT00000009763 3 1 1 80 4 15458504 15458522 ACTGATCCAAACATCCGAG 57 15453841 15458461 GCCACGATAACAATCTTGTC 57 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000041390 2 1 3 72 3 156662155 156662173 AGAACACCGGCATAAGGAG 60 156662206 156662925 GCTCCTGTTGCTATGTTTAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Mir1843 ENSRNOG00000045015 ENSRNOT00000070282 3 1 1 60 6 103567634 103567656 TCCTACATGAATATGGAGGTCTC 59 103567596 103567615 TGAACGATCAGACTTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-679 ENSRNOG00000036492 ENSRNOT00000054600 3 1 1 60 6 133864607 133864625 TGAGGTGACTCTTGGTGTG 59 133864648 133864667 CCTTATGGCTACTGTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578 3 2 5 80 7 115785605 115785624 GATTCATCTGTGTTCGTGGT 58 115785667 115785863 GACAGTTGTGTTCCTCTGC 59 NA Rattus norvegicus 81 Mrps33 ENSRNOG00000026528 ENSRNOT00000039067 3 1 1 85 4 67607618 67610490 CTTTACAGAGATGAGCATCAGG 59 67607554 67607572 TCTCCTTTCCTTGGCTTCC 59 NA Rattus norvegicus 81 Ppp1r42 ENSRNOG00000006804 ENSRNOT00000066395 2 1 1 81 5 8916752 8919851 AGATTCGATTGATGACCTCTC 57 8919892 8919912 GTTAGTGACTTGACTAATGCG 57 NA Rattus norvegicus 81 Zfp28 ENSRNOG00000042777 ENSRNOT00000020523 1 1 1 80 1 71169716 71170017 GGGCTCTTAGGTGTTTCTG 58 71169654 71169672 GCTAGCTGTCTCTGTACCT 58 NA Rattus norvegicus 81 Rn60_X_0636.3 ENSRNOG00000051268 ENSRNOT00000075898 1 1 1 86 X 62978112 62978130 CAAAGTTGCAGGCATCCTG 60 62978179 62979385 AGCTGCTTTCTGATTTCGTC 59 NA Rattus norvegicus 81 Rasgef1b ENSRNOG00000002345 ENSRNOT00000003207 3 1 1 80 14 12005057 12005520 GGACGGTGATAAGAACCAG 58 12005563 12005582 TAAGGAAACGTTTCTGTCCA 57 NA Rattus norvegicus 81 Cib3 ENSRNOG00000014600 ENSRNOT00000019578 1 1 1 80 16 19323532 19323551 CTGTGTTTAGTCACGAGCAG 59 19323775 19326291 GATAGAACAGCCTCATGATCTC 58 NA Rattus norvegicus 81 Lrp5 ENSRNOG00000015911 ENSRNOT00000022213 3 1 1 80 1 218891860 218891879 TCCCGTAAGGTTCTCTTCTG 59 218883224 218891818 CCAGTACATGTACCCATGTG 58 NA Rattus norvegicus 81 Rn60_X_0637.1 ENSRNOG00000051209 ENSRNOT00000076071 1 1 1 60 X 63031574 63031593 GGAGAAGAGAAAGGTCTCTG 57 63031615 63031634 CTAGAGAAGGATTGAGACCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knop1 ENSRNOG00000046147 ENSRNOT00000073003 1 1 1 80 1 188564784 188566960 CTGCATAGATCAGGTGAGAC 58 188564723 188564741 TTGGGTTCTGAAACCTCTG 57 NA Rattus norvegicus 81 Ptgir ENSRNOG00000016756 ENSRNOT00000022461 3 1 1 80 1 78834318 78834338 AAGTTTACCACCTGATTCTGC 59 78834378 78835422 TGAATCCTCTGATCGTGAGAG 59 NA Rattus norvegicus 81 Sgol1 ENSRNOG00000022499 ENSRNOT00000065721 3 1 1 80 9 4429413 4431222 AAACCACAGAAGCAAGTCCT 60 4431260 4431283 CATCAGTAGAGTTGACTTTATCCG 59 NA Rattus norvegicus 81 Olr409 ENSRNOG00000048611 ENSRNOT00000010341 2 1 1 60 3 16312110 16312129 TCTTCTGTGACCTGTCTACC 59 16312149 16312170 AGCTCATTGATGGATGTATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lynx1 ENSRNOG00000006086 ENSRNOT00000076708 1 1 1 82 7 115986645 115986664 CTACAATGGAGACAACTGCT 58 115986468 115986601 GGGTGAAGTAAGTTCGAGTG 58 NA Rattus norvegicus 81 Unc119 ENSRNOG00000011060 ENSRNOT00000015091 1 1 1 85 10 65611372 65611390 CTTTGGCTTCTGCATTCCC 60 65611438 65611718 TCTCACTGATTAGCTCCTCG 59 NA Rattus norvegicus 81 Apod ENSRNOG00000048273 ENSRNOT00000073330 3 1 1 84 11 72722048 72725827 CAGTTCTTCTCGTTGATGCC 59 72725874 72725892 TGGTGCAGGAATACACGAG 60 NA Rattus norvegicus 81 Prokr1 ENSRNOG00000009556 ENSRNOT00000012913 3 1 1 85 4 119377941 119384244 CATTGACAGGTATCTGGCCA 60 119377875 119377893 ACCACACCAGGAAGATCAG 59 NA Rattus norvegicus 81 Prl2c1 ENSRNOG00000039058 ENSRNOT00000059738 2 1 1 82 17 38855970 38858308 AAGTTCCTGGATACTGCTCC 59 38855907 38855925 TCCTCATTGCACAGAAGGG 60 NA Rattus norvegicus 81 Mir3589 ENSRNOG00000036269 ENSRNOT00000054392 3 1 1 61 X 143516997 143517017 GAACTTGGTGATACTCCAGAG 58 143517039 143517058 GATGTTTCTGCCAGGTTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap1m1 ENSRNOG00000014454 ENSRNOT00000019350 3 1 1 80 16 19291952 19292211 CTCAACACCCATGTGAAGC 59 19291890 19291908 GACCATGTACTCAATGCGG 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709,ENSRNOT00000075193 2 2 2 80 6 60739544 60745329 AGAGAAGAGAAAGGAAATGCTG 59 60747098 60747117 AGGATAATGCCATTCTCCCA 59 NA Rattus norvegicus 81 Cd209c ENSRNOG00000042807 ENSRNOT00000061750 3 1 1 81 12 2841752 2841770 CTGGATGGTCCTGTCAGAC 60 2838269 2841709 TTTCGTGAAACTGAAGAGCAG 59 NA Rattus norvegicus 81 LOC100912388 ENSRNOG00000047324 ENSRNOT00000050959 2 1 1 60 8 42549933 42549954 GCTTTGGTAAATAGCTCTATGG 57 42549974 42549993 CAGTCTGGTCTGTTAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Copa ENSRNOG00000006247 ENSRNOT00000008518 2 1 1 80 13 90503584 90503602 CCGACATTGACATCGACAC 59 90503646 90503836 CCACAAACCCATCTTCGTC 59 NA Rattus norvegicus 81 Vom1r30 ENSRNOG00000057219 ENSRNOT00000086294 3 1 1 60 1 63333802 63333820 TCCAAGCTCTTTCATGCAG 58 63333841 63333862 CTAAACACATGACATCAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptch2 ENSRNOG00000057616 ENSRNOT00000087353 1 1 1 112 5 135981922 135981940 GTACTTCTTCGTGGTGCTG 59 135982016 135982341 ATATCTGGACCACCTGTGG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 80 10 4343295 4343313 CCAGGATTCATCCTCTGTG 57 4343353 4344847 GTGCTCTATAATCACTATCTGGG 58 NA Rattus norvegicus 81 RGD1563958 ENSRNOG00000028869 ENSRNOT00000048460 2 1 1 60 8 32431727 32431745 TGTCAAGGAGCTGGAAGTG 60 32431685 32431703 GTGAGCAATCTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 2 2 2 80 19 26080673 26080692 GTCTACGCCATCTGTTACTG 58 26080485 26080631 TGTCAAGGTCTTTGAGTCTG 58 NA Rattus norvegicus 81 Egr4 ENSRNOG00000015719 ENSRNOT00000021097 3 1 1 128 4 117295373 117295391 AACAGACTCCTGCTTCCTG 59 117295263 117295281 GACATGAGGTTGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007932.1 ENSRNOG00000052652 ENSRNOT00000084377 2 1 1 60 2 35549408 35549426 TCATGTACCTTCAGCCCTC 59 35549366 35549384 AACACAGACGACACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl19 ENSRNOG00000006968 ENSRNOT00000009308 1 1 1 80 4 112705239 112705257 TTTGCATCAAGCGATCAGG 59 112703843 112705196 AAATCTCCACACCTTGTCCT 59 NA Rattus norvegicus 81 Cbx8 ENSRNOG00000048113 ENSRNOT00000073337 2 1 1 121 10 108149636 108149752 TGAAGAAAGGGAACGGGAG 59 108149125 108149146 AGTCGCTTCTGAATTCATAGGT 60 NA Rattus norvegicus 81 Cbx8 ENSRNOG00000048113 ENSRNOT00000073337 3 1 1 122 10 108149638 108149754 TTTGAAGAAAGGGAACGGG 58 108149126 108149146 GTCGCTTCTGAATTCATAGGT 58 NA Rattus norvegicus 81 Myot ENSRNOG00000047186 ENSRNOT00000070817 3 1 1 80 18 35586293 35587806 ATGGACTTTAAAGTGAGTGGAC 58 35587846 35587865 CAACTCATCTGATTGCACCA 59 NA Rattus norvegicus 81 Aldh5a1 ENSRNOG00000023538 ENSRNOT00000031384 3 1 1 82 17 42140859 42140878 TTGCTCCGTAAATGGTACGA 60 42140923 42142292 AGTGGCTTTCCACTCTCAG 59 NA Rattus norvegicus 81 Ggta1l1 ENSRNOG00000042373 ENSRNOT00000060013 2 1 1 83 3 14570041 14571575 CTACTCCAGAACAAAGGATCAC 59 14563948 14563966 AACCAAGACTCGAGCTGAG 59 NA Rattus norvegicus 81 Tchhl1 ENSRNOG00000009610 ENSRNOT00000038311 3 1 1 81 2 193807352 193807370 CAAGGAAGCAATGCTGACC 60 193807414 193807911 AAAGACATGTGGCTGAAGGA 60 NA Rattus norvegicus 81 Ptpro ENSRNOG00000006231 ENSRNOT00000040576 3 1 1 80 4 171378037 171378055 ACTCTGAGCTGGTTACCAC 59 171378097 171380057 GGTAAAGTTCCCTTCCCTCTC 60 NA Rattus norvegicus 81 Brsk1 ENSRNOG00000017673 ENSRNOT00000031172 2 1 1 80 1 72706830 72706849 GTGTGGTAGAGACCATCCAG 60 72701931 72706789 CATTCTTCTCATCTGCCAAGG 59 NA Rattus norvegicus 81 LOC100911801 ENSRNOG00000046963 ENSRNOT00000071964 1 1 1 60 8 42010505 42010524 GTCTTCAGGTAAGGGTTGGT 59 42010547 42010565 AGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 2 2 2 81 2 123271337 123271355 AGCTGGTGTGAAAGTAGCA 59 123271397 123272311 TCCACCTTCTTTCCTAACTCTC 59 NA Rattus norvegicus 81 Svs5 ENSRNOG00000013834 ENSRNOT00000018537 2 1 1 106 3 160714570 160715142 CAATAGGCAGGTTGTCCTC 58 160715212 160715230 GAAGCACGGACTATTTCCG 59 NA InUTR Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637,ENSRNOT00000085613 2 2 2 80 6 27568692 27568711 CTGATAAGACTCCAGCTCAC 58 27566729 27568650 CTATCAGACCAACAGCTGTG 58 NA Rattus norvegicus 81 Spryd7 ENSRNOG00000015095 ENSRNOT00000020419 2 1 1 80 15 41880686 41880705 TGTACCACAACAACGAAGAG 58 41875669 41880649 CATATGTTATACCCACTACATCTCC 59 NA Rattus norvegicus 81 Lix1l ENSRNOG00000021213 ENSRNOT00000056237 2 1 1 80 2 198744633 198746948 GCATCTTTCAATGGTAACAGAG 58 198746987 198747007 GTTAGATTCCAGCATGAATCG 57 NA Rattus norvegicus 81 Hoxd3 ENSRNOG00000001577 ENSRNOT00000033511 1 1 1 158 3 61658535 61666296 GGATCCAGGTTACCTGGAG 59 61666418 61666436 TAGTATGCAGCCTTCTGCA 59 NA InUTR Rattus norvegicus 81 Rp1l1 ENSRNOG00000046326 ENSRNOT00000070815 2 1 1 90 15 47373745 47377201 ATGGGAAGAAGGTGGACTC 59 47377255 47377273 ATCTCCAGACGTCTGAAGG 59 NA Rattus norvegicus 81 Amer3 ENSRNOG00000023603 ENSRNOT00000033700 2 1 1 60 9 41098459 41098480 CATCAGCAGATATGAAAGGCAG 60 41098501 41098519 CATTGCACATCCTTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcnt1 ENSRNOG00000050534 ENSRNOT00000074939 2 1 1 60 1 236581513 236581534 AAATTGTCAGGAAGCTCAAGTC 59 236581554 236581573 GGCATCTTCTCAGTTTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.3 ENSRNOG00000061839 ENSRNOT00000080857 2 1 1 80 5 47849779 47849916 GATTTAGCTCAGGTTGACCG 59 47849957 47849977 GCATCTTCCTCAGATCTTCCT 59 NA Rattus norvegicus 81 Mrs2 ENSRNOG00000017545 ENSRNOT00000023787 3 1 1 80 17 42079502 42079983 TCAATCTAGATAGCCATCGCA 59 42080023 42080043 CAAAGAGTGAAAGCGAGAAGG 60 NA Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 1 1 1 63 3 147982540 147985575 AACTCAGGTGACCAAAGCT 59 147982495 147982515 CCCTAAATTATCCTTCCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Pgam2 ENSRNOG00000013532 ENSRNOT00000018227 1 1 1 80 14 86045176 86046423 AAGCATCTGGAAGGGATGTC 60 86045115 86045135 GTTCAGCTCATACACAATGGG 59 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849 3 2 3 155 7 18564608 18564626 TGTTTATCACACCACTGGC 58 18559933 18564489 GGAAAGAGACCAGTGTCCA 59 NA Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000045609 ENSRNOT00000073344 2 1 1 60 10 35571784 35571804 TGAGACTGATTGTCATGTGTC 58 35571820 35571844 CAGGTATGGCTATAAAGTAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564036 ENSRNOG00000003068 ENSRNOT00000004111 1 1 1 80 10 35702288 35704085 AACTTTCAACACCAGGACTC 58 35704128 35704146 GTGGTTTGTGGTACTGAGG 58 NA Rattus norvegicus 81 Npy5r ENSRNOG00000014172 ENSRNOT00000018976 1 1 1 80 16 24797348 24802913 ATCCCGAGGATTCTAGTATGGA 60 24802952 24802972 CAGCAGCTGTATTGTTCTCTG 59 NA InUTR Rattus norvegicus 81 AC121415.1 ENSRNOG00000007402 ENSRNOT00000009702 3 1 1 60 2 178212365 178212384 TGCCTTGATTCCTCGATCTC 60 178212324 178212345 ATGAATTAGATCCTCCATGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mstn ENSRNOG00000021294 ENSRNOT00000038093 3 1 1 80 9 53315474 53315492 GGCTCTTTGGAAGATGACG 59 53313653 53315433 TTGCATTAGAAAGTCAGACTCG 59 NA Rattus norvegicus 81 AABR07031963.1 ENSRNOG00000052952 ENSRNOT00000091759 3 1 1 81 18 40854664 40854682 CAGAATAAGGCCAGCAGGA 60 40855904 40856868 CTTCTGCAGTGTCCATCCT 59 NA Rattus norvegicus 81 Pak4 ENSRNOG00000019883 ENSRNOT00000026966 3 1 1 94 1 85197879 85197897 CTACCTGGTAGGCGATGAG 59 85197954 85198256 GTTCCTCATTCATCCTGGTG 58 NA Rattus norvegicus 81 Gpr108 ENSRNOG00000046128 ENSRNOT00000075403 2 1 1 80 9 9710222 9710240 GTACAGCCTCAACTTCCAC 58 9710282 9711506 TCTCGGATCATTACAGTGAGG 59 NA Rattus norvegicus 81 Il25 ENSRNOG00000016804 ENSRNOT00000022563 1 1 1 93 15 33596779 33598966 AGCTATGAGTTGGACAGGG 59 33599023 33599041 ATCCTGTCTGTAGGCTGAC 59 NA Rattus norvegicus 81 Scnn1a ENSRNOG00000019368 ENSRNOT00000067271 2 1 1 80 4 157853187 157853208 GAACTGCTACACTTTCAATGAC 58 157853248 157853609 AGGGACAAACCATTGTTGAC 59 NA Rattus norvegicus 81 AABR07054514.2 ENSRNOG00000052824 ENSRNOT00000073505 2 1 1 60 3 158809131 158809150 CATTCTCACATCAATGGCCT 58 158809170 158809191 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a8 ENSRNOG00000020939 ENSRNOT00000063879 1 1 1 80 1 227139732 227139753 CAGACATCAGTATCTCAGGAGG 60 227137310 227139691 TAGCCACACCTGTACTCAC 59 NA Rattus norvegicus 81 Luc7l3 ENSRNOG00000002835 ENSRNOT00000003914 1 1 1 80 10 81993185 81993203 CCTGAGTCGAAGGAAAGTG 58 81993018 81993142 ATACTTACGCTGCACTTCAG 58 NA Rattus norvegicus 81 Luc7l3 ENSRNOG00000002835 ENSRNOT00000003914 2 1 1 82 10 81997120 81997138 AACTTCTGACCGGAGATGC 60 81996150 81997077 GATCTCTACTTCTGCTTCTCCT 59 NA Rattus norvegicus 81 Cd14 ENSRNOG00000017819 ENSRNOT00000023977 1 1 1 126 18 29561789 29561899 CGACCATGAAGCTTATGCTC 59 29561682 29561700 GAGAAGTTGCAGTAGCAGC 59 NA InUTR Rattus norvegicus 81 Cd14 ENSRNOG00000017819 ENSRNOT00000023977 2 1 1 126 18 29561790 29561899 CGACCATGAAGCTTATGCT 58 29561682 29561700 GAGAAGTTGCAGTAGCAGC 59 NA InUTR Rattus norvegicus 81 Tgfb1 ENSRNOG00000020652 ENSRNOT00000028051 3 1 1 106 1 82486542 82486560 GTTACCTTGGTAACCGGCT 60 82486629 82488888 CTGTATTCCGTCTCCTTGGT 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 2 2 2 96 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312684 36312702 TCTGTTCTTTAGCAGCCCA 59 NA Rattus norvegicus 81 Alpp ENSRNOG00000033672 ENSRNOT00000025978 2 1 1 80 9 94191584 94191790 CCGACATTGATGTGATCCT 57 94191522 94191540 GGTCAGTCGGATATTCCTG 57 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242,ENSRNOT00000007069 2 2 2 80 3 51809943 51812884 TCAAGAAATGTAGAACTGCAGC 59 51812923 51812943 GCCGAAGATGATGAAGATGAC 59 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000078029,ENSRNOT00000020648 3 2 2 75 17 15477420 15477444 CCAAGGAATTTGGAACATCTATACC 60 15476626 15476647 GAGAAGGACACATCATTGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Polb ENSRNOG00000019150 ENSRNOT00000026039 2 1 1 81 16 74248989 74249008 GTCCAGTGGAGATATGGACG 60 74249050 74251150 ACGATGTAACAACTTTGGCTG 60 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 2 1 1 109 18 32595193 32605362 TCTGCAGCTCCTCAAAGAC 60 32605435 32605453 GAGCTGGGATTCAAAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 3 1 1 110 18 32595193 32605362 TCTGCAGCTCCTCAAAGAC 60 32605436 32605454 TGAGCTGGGATTCAAAGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cpn1 ENSRNOG00000013439 ENSRNOT00000018221 1 1 1 80 1 263749662 263749877 AAAGTCAGGTGGAACCAGAG 60 263749601 263749619 CGTGCATATTGGCTGAGAG 59 NA Rattus norvegicus 81 Ccdc80 ENSRNOG00000002052 ENSRNOT00000059735 2 1 1 80 11 60669257 60676554 CGAAGACTCCTCCTGATCAC 60 60669196 60669217 GAAGCTCTCCAGATACTCATCC 60 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000065899,ENSRNOT00000006249 2 2 2 83 7 28684294 28696868 AGAATGACAAACAGGTGCG 59 28684229 28684250 CCAGGTCATTCTTTGAATTCAC 58 NA Rattus norvegicus 81 Egflam ENSRNOG00000012058 ENSRNOT00000016722 2 1 1 80 2 56592070 56593121 CCACTTTGTCTCAAGATTCCT 58 56592010 56592030 CCACTTCAGAATCAGAAACCA 58 NA Rattus norvegicus 81 Rhag ENSRNOG00000050121 ENSRNOT00000072144 3 1 1 80 9 23469037 23469056 AAAGCTACCTGTCTGGAACC 60 23466013 23468997 TCTCTGTATTTGGGAACCTTCC 60 NA Rattus norvegicus 81 AABR07043288.1 ENSRNOG00000057732 ENSRNOT00000074693 3 1 1 81 19 27106829 27108735 AGCTCAACAACGTAATGAAGTC 59 27108774 27108795 AGGCTGAATAGTAAAGGTCTGG 60 NA Rattus norvegicus 81 Hlf ENSRNOG00000002456 ENSRNOT00000055664 1 1 1 89 10 77918139 77918157 CTACCTTTATCCCGCCTCC 59 77916008 77918087 TGCTAAATGCGTCTTCAGGA 60 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332,ENSRNOT00000083666 2 2 2 80 8 64490587 64490610 GATGCTGAAGGAGATGATTAAGTC 60 64490649 64493324 TCTGCATGGTACTCATGGG 59 NA Rattus norvegicus 81 Rn60_20_0009.5 ENSRNOG00000050438 ENSRNOT00000066245 3 1 1 60 20 1601638 1601659 TTGTAGATGTGAAGTTCTTGCC 59 1601599 1601618 GAACAAAGACACGCAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 1 2 2 93 1 31871821 31880988 AAGATCAAAGGGAAGTCCTG 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Rn60_3_0729.2 ENSRNOG00000055145 ENSRNOT00000077283 1 1 1 60 3 66296012 66296030 GCCAGTTTAACTCTGACCT 57 66296054 66296072 TGTAGGCATAGGAAGAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smagp ENSRNOG00000048932 ENSRNOT00000073536 3 1 1 88 7 142245605 142246224 CATTGCAGTTGTTATAACCGTG 59 142245538 142245559 AGCTGCCTTTATTCTTGTACAG 59 NA Rattus norvegicus 81 Emb ENSRNOG00000060329 ENSRNOT00000079907 2 1 1 80 2 49710935 49711172 CAGTCAATACAGGTTCACCG 59 49711214 49711233 GTTCCTCTGAGCTCTTCTCC 60 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228,ENSRNOT00000072911,ENSRNOT00000072009 2 3 3 82 9 10348715 10348939 AGTATATCAGTTCCAGCGCA 59 10348652 10348670 CTCACTCATGTTCTGGCCA 60 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047286 ENSRNOT00000072353 2 1 1 60 8 42046429 42046450 TCTGAGTTCATTCTTATGGGAC 58 42046471 42046489 GGACAAACAAGGGACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgkd ENSRNOG00000023238 ENSRNOT00000035338 3 1 1 80 9 95013199 95013219 TTGATGAGGTAGACCTGACTG 59 95013260 95043842 GAGTGATGACCGTGAAACTG 59 NA Rattus norvegicus 81 Irg1 ENSRNOG00000009919 ENSRNOT00000013182 3 1 1 82 15 93613067 93615410 ATGCTCAAGTCTGTCACAG 58 93615456 93615474 CTCTGAATGACGCCATCTG 58 NA Rattus norvegicus 81 Txndc15 ENSRNOG00000000133 ENSRNOT00000000146 1 1 1 80 17 9437925 9437944 TGTGAGGAGAGGAATGTGAC 59 9434838 9437884 TAGGAAATCCATGAGGTCCTG 59 NA Rattus norvegicus 81 Imp3 ENSRNOG00000017460 ENSRNOT00000023456 1 1 1 60 8 61607034 61607052 TGCGGAAGCTTAAGTTCCA 60 61607075 61607094 TCCCAGTTTAGGAAGTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373,ENSRNOT00000087416 1 3 3 80 5 142703750 142704805 GCACCCAAATGAGATCTGTG 59 142704847 142704866 GCCTCTTCACTTGGATTCTC 58 NA Rattus norvegicus 81 RGD1560108 ENSRNOG00000032042 ENSRNOT00000051855 1 1 1 91 1 222673112 222673397 CTCACCAGACGATGACCTC 60 222673452 222673470 TGAGATCCTGAGAGGAGGG 60 NA Rattus norvegicus 81 Acot9 ENSRNOG00000003782 ENSRNOT00000005033 3 1 1 80 X 43545822 43549963 ACAAGGAGAATTGAACAAGAGC 59 43545763 43545783 CTCTCCTCAGAATTAGGAGCT 59 NA Rattus norvegicus 81 Gpld1 ENSRNOG00000017702 ENSRNOT00000024196 3 1 1 80 17 42096269 42096291 TGTATGTCTACTATGGTTCCCAG 59 42096120 42096230 TACAGTAGGTGTCCTTGCAG 59 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 1 1 1 105 5 162032740 162052410 CATCCAAACTGCCCAAAGG 59 162052479 162052497 TTACACTCGCTGAAACTGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC689927 ENSRNOG00000042329 ENSRNOT00000066482 1 1 1 108 20 11538582 11538600 CCAGCAGTCTAGCTGTGAG 60 11538492 11538510 TTCAGAGCAGATGGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689927 ENSRNOG00000042329 ENSRNOT00000066482 3 1 1 111 20 11538582 11538600 CCAGCAGTCTAGCTGTGAG 60 11538489 11538507 GGATTCAGAGCAGATGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 3 2 2 80 13 99428802 99430263 AGATCAGACCGAGAAACAGG 59 99428741 99428759 CTGGCGTGTTTCTAAACCA 58 NA Rattus norvegicus 81 Ppp5c ENSRNOG00000016907 ENSRNOT00000023078 1 1 1 80 1 78948244 78948262 AGTGCAGGTGAAGGAAGTC 60 78947897 78948204 CACACTGTAATCTTCTCTGTCTC 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000025353 ENSRNOT00000071946 1 1 1 80 1 192014510 192014528 TCCCTGTTTCTGTTCACCA 59 192008461 192014467 TTGTCATACCGAGGTGTCTG 60 NA Rattus norvegicus 81 LOC100909937 ENSRNOG00000047788 ENSRNOT00000073494 2 1 1 60 8 43024209 43024230 TGTTTCTTGTACACAGTGATGG 59 43024170 43024190 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364827 ENSRNOG00000048656 ENSRNOT00000050384 1 1 1 60 2 31378830 31378851 TACATGCGAATCTACAAGAAGG 58 31378872 31378890 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin2b ENSRNOG00000008766 ENSRNOT00000011697 2 1 1 80 4 169752534 169873125 GCGGATAAGGATGAGTCCTC 60 169752473 169752492 CATGATGTTGAGCATGACGG 60 NA Rattus norvegicus 81 Tmprss7 ENSRNOG00000002145 ENSRNOT00000045521 2 1 1 80 11 60104706 60108699 GCTCTATATCAGTAAGACAGACAG 58 60108736 60108756 GGAAGAAACTCAATGTTGGTG 58 NA Rattus norvegicus 81 Tryx5 ENSRNOG00000028989 ENSRNOT00000048779 1 1 1 84 4 69157251 69157682 CAACTAAGGAAGTCTCAGCT 57 69157186 69157205 TTGGTTATACCTGCTTTCCC 58 NA Rattus norvegicus 81 LOC100910942 ENSRNOG00000013073 ENSRNOT00000017489 3 1 1 64 18 35249144 35249163 TAGCAGGTGTCTTTCTGCTC 60 35249190 35251840 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 1 2 2 80 7 9826344 9826365 AGATCCTTCCCAGAAGAATCTC 59 9826090 9826306 TCCCATTTACACCCTATACCAC 59 NA Rattus norvegicus 81 Olr1199 ENSRNOG00000011563 ENSRNOT00000015369 2 1 1 60 8 40285642 40285660 TGCCAAGAATTCCTCTGTG 58 40285684 40285702 TAGTCCTGGCTGGTTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paf1 ENSRNOG00000019746 ENSRNOT00000026778 1 1 1 80 1 85366448 85366466 AACAGCCTTCCTGACATCC 60 85366114 85366407 TGCTTTGTACTGAACAAACCTG 60 NA Rattus norvegicus 81 Olr1743 ENSRNOG00000000765 ENSRNOT00000000992 3 1 1 60 20 1845609 1845630 AATTGATCACTTCTACTGCGAC 59 1845570 1845588 TCCAGTATCTGAGCAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2ql1 ENSRNOG00000034075 ENSRNOT00000041762 2 1 1 253 1 36187082 36187100 CCTTCCCGGATAACTTCCC 60 36225025 36225043 AAAGGTTGCTTCAGCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Telo2 ENSRNOG00000016774 ENSRNOT00000022670 2 1 1 80 10 14472769 14472788 GGTCTAGACTGCTCTGTCTC 59 14472461 14472728 ACCCAGGATCTCTTTCTTTCG 60 NA Rattus norvegicus 81 LOC100912399 ENSRNOG00000013177 ENSRNOT00000017968 3 1 1 80 2 43335495 43336425 TGAAACAGGTGACCTACGT 59 43335433 43335452 TCATCCTGATCTCTTCCCTC 58 NA Rattus norvegicus 81 Olr1730 ENSRNOG00000000759 ENSRNOT00000000986 3 1 1 60 20 1647995 1648016 ATTTCTTCTGTGACATACCTCC 58 1648035 1648055 TCATTAAGGGCAGTATCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r36 ENSRNOG00000031899 ENSRNOT00000047856 2 1 1 60 1 72183998 72184016 TTCCTGTACTTGGTGGCTC 59 72183956 72183975 GATAAGTACTCAGGGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr2 ENSRNOG00000002793 ENSRNOT00000003735 1 1 1 117 10 102136554 102141639 AAAGCAAGATGTCACGATAGAC 59 102141717 102141735 CTGCTCAGAGGTCAACTCC 60 NA InUTR Rattus norvegicus 81 Spag5 ENSRNOG00000011777 ENSRNOT00000015651 2 1 1 80 10 65579018 65583035 AGAACAAGGCAGAATCAGAC 58 65583078 65583096 TGCTATCACTGGAAGGAGG 59 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 2 2 2 80 3 129078450 129146887 GCTCCCATGAAGACAATCG 59 129078388 129078408 GTTGTCGAAATCCTCTAGCAG 59 NA Rattus norvegicus 81 Olr1397 ENSRNOG00000029739 ENSRNOT00000048253 3 1 1 60 10 34726998 34727017 GACTGGAACTTATCCTGCTG 58 34727040 34727058 TTGCCACAGAGGGTTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1306 ENSRNOG00000039236 ENSRNOT00000060093 3 1 1 60 8 43283537 43283555 TGGGTTTCTCCTCTGTGAC 59 43283495 43283515 AGTCTGCTAAGTCCCATAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC106663.1 ENSRNOG00000054513 ENSRNOT00000077428 2 1 1 80 14 86659143 86659419 TATTCAGAACTCAGACTACGAGG 59 86659459 86659477 TGTAGGTCAGGCTTCACAG 59 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336,ENSRNOT00000020717 3 2 2 80 2 187077155 187077173 AATGTGCTCTGTGAAGCTC 58 187077217 187077348 CAGAGTACGCTTGGATCTG 58 NA Rattus norvegicus 81 Gal3st2 ENSRNOG00000022982 ENSRNOT00000038687 3 1 1 99 9 100991810 100991828 TATGTAGAGGGCCTGAAGC 59 100991891 100992403 GCATGACTTTCTGCACCTC 59 NA Rattus norvegicus 81 Magee1 ENSRNOG00000002660 ENSRNOT00000003573 1 1 1 60 X 76086128 76086146 GAACCACTCCTACACCCTG 59 76086164 76086188 GTCCATAATCTCTTCCATATCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd15 ENSRNOG00000015002 ENSRNOT00000034282 1 1 1 80 10 62645607 62647920 TCTCAGCAGGTATGCTTCTG 60 62645546 62645564 TCAAACTCTCGAAGGGAGC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162,ENSRNOT00000091236 2 3 3 80 10 38891768 38892619 GATAGCAAGGTGAACATAATCC 57 38892658 38892678 CTTGATCTTGAACTTGTGGAG 57 NA Rattus norvegicus 81 LOC100362690 ENSRNOG00000046489 ENSRNOT00000030635 2 1 1 81 8 38240254 38240901 GGCTTCCTACAAGCTTTGAC 59 38240940 38240963 TACAGGTAGAGTATCCTTTCTCAC 59 NA Rattus norvegicus 81 LOC100362342 ENSRNOG00000050554 ENSRNOT00000073093 1 1 1 85 1 209722691 209722815 TGAGCTCAATGATTCTGCA 57 209722624 209722643 GGTGACACTTACAGATTCCC 58 NA Rattus norvegicus 81 Olr731 ENSRNOG00000006819 ENSRNOT00000008924 3 1 1 60 3 78941918 78941936 TAGTGGTGTGATTTGCCTG 58 78941876 78941895 CAGGATGACAATGTAGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abt1 ENSRNOG00000017585 ENSRNOT00000023649 1 1 1 85 17 43947202 43947222 GGCAGCTAGTCTACATAACAC 58 43947266 43947437 GATGCAAATACTTGAGGTTCCA 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202,ENSRNOT00000051910 3 2 2 80 2 61406781 61406877 CGACTGTCTATAGATGTGGC 58 61406720 61406740 TCAGAGTCTTAATCTTGCCAG 58 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 1 2 2 80 14 7767711 7767731 GCTTCCAAGAGGTTTGAATCC 60 7762707 7767672 TTCATATTGTCTACTGGGTCGT 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000083651,ENSRNOT00000045099,ENSRNOT00000086105,ENSRNOT00000081321 1 5 5 80 16 19741522 19741541 AGAAGAAGTCAGAAGACCCA 58 19741581 19744873 TAAAGGCAGATTTAGAGTCACC 58 NA Rattus norvegicus 81 Plac8l1 ENSRNOG00000018820 ENSRNOT00000025453 2 1 1 90 18 36502515 36513064 TAATCTCCGACTTGAGGAGC 59 36502444 36502462 ATAGCTGTGACTGTGGTCC 59 NA Rattus norvegicus 81 RGD1563383 ENSRNOG00000048925 ENSRNOT00000072026 3 1 1 60 X 49529744 49529762 TCAGAGCAGATTGTCTCCA 58 49529702 49529724 GTGGGAGTGATTACAAGATTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar2 ENSRNOG00000021021 ENSRNOT00000028532 3 1 1 60 1 89269100 89269122 CTCTGCTATTCTACTTCTCCTCC 60 89269062 89269080 AGTAGCAAACCTTTCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfx5 ENSRNOG00000021012 ENSRNOT00000068528 3 1 1 81 2 196123161 196123294 CAGTCCAAATATTGCTACAGTGG 60 196123335 196123353 ATCCCTTCAAGTCAAGCCC 60 NA Rattus norvegicus 81 Ccnc ENSRNOG00000007719 ENSRNOT00000011442 2 1 1 80 5 35876551 35879502 ATGATAGCTTTAGCTTGCCT 57 35879544 35879563 CACAGAAAGTTCTGCAAACC 58 NA Rattus norvegicus 81 Rwdd2a ENSRNOG00000009599 ENSRNOT00000012864 2 1 1 94 8 94244342 94244361 ATAAAGAGGTACCTGGACGG 59 94244418 94245460 TCAATTGTCACCTTGGGCT 60 NA Rattus norvegicus 81 Olr1387 ENSRNOG00000048858 ENSRNOT00000049989 3 1 1 60 10 34553687 34553705 TCATGCACCCTGTTCTCTG 60 34553729 34553747 TTCAAGAAGCCTCCTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000077072 3 1 2 178 15 51757117 51757557 CTCAGATGGCTACAGCCTC 60 51758516 51758535 ACTTTCCCAAGTAGGTCACG 60 NA InUTR Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785,ENSRNOT00000049812 1 2 2 80 1 222683893 222686398 GGACATCCATTCAAGGCCT 60 222683831 222683851 CATTGCAGCATTCATGTAGCT 60 NA Rattus norvegicus 81 LOC100910414 ENSRNOG00000037984 ENSRNOT00000003791 1 1 1 80 13 97951435 97952140 AGATGAACGGCACTTTAACTG 59 97952646 97952666 TTCCGTCATGAATACACAACC 59 NA Rattus norvegicus 81 Ypel3 ENSRNOG00000019721 ENSRNOT00000026755 2 1 1 84 1 198211953 198213346 CTGGAAATATGAGCAAGCCT 58 198213391 198213411 GTCTTTGATCATGTGGTTGAG 57 NA Rattus norvegicus 81 Gpr62 ENSRNOG00000022567 ENSRNOT00000033018 1 1 1 97 8 115167417 115167435 TTTATCCTGGCGGTTCTCG 60 115167338 115167356 TAGAAGGCATCTTGCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 2 2 2 80 10 63756373 63756391 TGAGGCATGGAAACATGTG 59 63756434 63762545 TCTGCCTTGTAATCCTTGCT 60 NA Rattus norvegicus 81 Pelo ENSRNOG00000061128 ENSRNOT00000091499 1 1 1 94 2 47267347 47267655 ATTCCTTCAGGTACACGCC 60 47267271 47267289 CTTTCGTGTCTGAAAGGCG 60 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 1 2 2 80 10 29039364 29039705 CAAACACAACTGTTTGCGTG 59 29039748 29039766 CAGCTCGAGTTTGGTAGGA 59 NA Rattus norvegicus 81 Sorbs3 ENSRNOG00000008829 ENSRNOT00000012056 3 1 1 80 15 51877621 51877639 TGTTCCAGCAAATTCACCG 59 51873646 51874052 GTGAGGAAACCACTTTGGG 59 NA Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000034289 1 1 2 80 6 95480927 95481764 GACTTCACGGAGACCAGAC 60 95480865 95480884 GGAGACAAGGATTAGCTGGA 59 NA Rattus norvegicus 81 Uncx ENSRNOG00000001284 ENSRNOT00000001730 1 1 1 90 12 17185604 17185622 TCAATGAGAGCCACTACCC 59 17183574 17185550 TGGAACCAGACCTGAACTC 59 NA Rattus norvegicus 81 B3galt1 ENSRNOG00000007625 ENSRNOT00000010018 1 1 1 85 3 54253987 54264680 TGTGGTAATGAGTTCTGAGG 57 54264728 54264746 GTGGCATCATGGAATTCAC 57 NA InUTR Rattus norvegicus 81 Olr484 ENSRNOG00000045807 ENSRNOT00000012959 1 1 1 60 3 73522855 73522874 CACCCATGTACTTCTTCCTC 58 73522814 73522832 ATGACAGTTGAGTTGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ybey ENSRNOG00000021365 ENSRNOT00000038953 3 1 1 97 20 12917785 12919042 TTCATGAGAATCTGAAAGCAGG 59 12919097 12919118 CTGGAAGATATACTCCACTCCT 58 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000010468 ENSRNOT00000014155 2 1 1 82 2 234194586 234219854 GTCTTCAGTATATTCGGTGCTC 59 234194525 234194543 CAAACTGACTGCTTCAGGC 60 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 3 2 2 80 4 79895062 79895082 AATCAGTTATTGCCAGTGGAC 59 79895122 79895803 CCTGAATGTTACACCCAATGG 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417,ENSRNOT00000087094 1 2 2 80 12 13109937 13109955 GCTGAAGGAGAAGAAGCTG 58 13109999 13110264 AGGTATTTGACAGCACCGA 59 NA Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 2 2 2 80 18 47842790 47850110 GCCATCAAGAATGGTCAGC 59 47850153 47850172 CTTGGAACAACTCAGTTCCG 59 NA Rattus norvegicus 81 Ssty1 ENSRNOG00000049619 ENSRNOT00000071530 1 1 1 60 3 96552197 96552215 CAACTGCCAACAAATCCCT 59 96552238 96552257 CGTAGACACAGTCAATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinf1 ENSRNOG00000003172 ENSRNOT00000004313 3 1 1 86 10 62242110 62242372 AGGACATGAAGCTACAGTCC 59 62242043 62242061 TGTGTTCCACTTGGGTGAG 60 NA Rattus norvegicus 81 LOC102555919 ENSRNOG00000022971 ENSRNOT00000039827 3 1 1 87 10 36365081 36371568 TTTGTTCTGGGAGGGATGAC 60 36365013 36365034 CCGTAATCCATTGATCTGATCC 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284,ENSRNOT00000064284 3 2 2 82 10 103673708 103673728 GGTCTCACTAATTGCTTGGAG 59 103671115 103671753 GATCATCCTCCAGAGGCTG 59 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725,ENSRNOT00000045628 3 2 2 80 8 111705662 111707378 CCACAATCAGATGTCTTTCCT 58 111705602 111705620 GTTGTTCCAGTTGATGCTG 57 NA Rattus norvegicus 81 RGD1359334 ENSRNOG00000021656 ENSRNOT00000064238 2 1 1 81 2 196414478 196414496 GGAAACGTGTCAGGATTGG 59 196412053 196414435 GTTCTTTCTATTGGTTGCGTC 58 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 3 2 2 80 17 30699843 30703883 CGAAGAAGAGATAGGAGTCGA 59 30699783 30699801 GCTCCTTCTCCTATGACCA 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000086771 3 1 6 87 1 261995436 261996441 CAGGAGATTCAGAACGCCT 60 261995367 261995386 GTATGGCTACTCACTCCCAG 59 NA Rattus norvegicus 81 LOC100911547 ENSRNOG00000048711 ENSRNOT00000072882 2 1 1 60 8 21034584 21034604 AGTTCTTCCAAGCAAAGTGTG 59 21034624 21034644 TCATCATGGGAACTATCGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3577 ENSRNOG00000049542 ENSRNOT00000074367 3 1 1 60 10 104340722 104340742 GGAGGTTTGCTTGTTATAGGG 59 104340763 104340782 GAGGGACAGATGATGACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097,ENSRNOT00000042754 1 2 2 80 11 57424569 57425352 AAAGATGGATGCACTTCCTG 58 57430186 57430204 CTCCTGAGTCCTCTGTTCC 59 NA Rattus norvegicus 81 Rps18 ENSRNOG00000028505 ENSRNOT00000037499 2 1 1 123 20 5442476 5444964 CACTGCCATTAAGGGTGTG 59 5445051 5445069 CATGATGGTGATCACACGC 59 NA Rattus norvegicus 81 Rps18 ENSRNOG00000028505 ENSRNOT00000037499 3 1 1 124 20 5442476 5444964 CACTGCCATTAAGGGTGTG 59 5445052 5445070 GCATGATGGTGATCACACG 59 NA Rattus norvegicus 81 Mthfd1l ENSRNOG00000019582 ENSRNOT00000026564 3 1 1 80 1 40598260 40598280 CTGCCGCTAATAACTTACTGG 59 40598319 40599246 TGTATAGAGCCTTGTCTGTCTG 59 NA Rattus norvegicus 81 Cttnbp2nl ENSRNOG00000014479 ENSRNOT00000019680 3 1 1 80 2 207521875 207521893 AACTGCTGACACTGTTCAG 58 207505634 207521831 TGTGTTGGGCCTTTAAAGC 59 NA Rattus norvegicus 81 Olr311 ENSRNOG00000050359 ENSRNOT00000041052 1 1 1 60 1 213374983 213375001 GCTTCCTGTCCCTCTACAC 60 213375024 213375043 GTGACCAAAGCAATGATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc1a4 ENSRNOG00000005248 ENSRNOT00000007002 3 1 1 80 14 104611934 104611952 GCTGGAGAACTCAGAACCT 59 104599366 104611891 GAAGGGAACAGGTTTCTGAG 58 NA Rattus norvegicus 81 Lrrc59 ENSRNOG00000003524 ENSRNOT00000004941 1 1 1 80 10 82357106 82357126 CTTCAGCATTTGGATCTCCTC 59 82357166 82357405 CAGCCACTTCAGATTCTTGAG 59 NA Rattus norvegicus 81 Olr742 ENSRNOG00000052629 ENSRNOT00000085154 1 1 1 60 3 79132884 79132903 ATATGAGACCTTCCTCCACC 58 79132843 79132861 ATGACCGTGTAGAACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919,ENSRNOT00000082489 3 2 2 81 3 7795360 7795378 TGTCAAGGTCAAAGTGGAG 57 7776225 7795315 CAGGTAAGGGTTCTCATGG 57 NA Rattus norvegicus 81 Rbm7 ENSRNOG00000005710 ENSRNOT00000007736 2 1 1 82 8 52827256 52827640 CAGTTTAGATCAGGAAGTAGTCAC 59 52827195 52827214 GACGTAGGGCTTAAGTTTCC 58 NA Rattus norvegicus 81 LOC100910965 ENSRNOG00000051156 ENSRNOT00000076565 1 1 1 60 7 116585603 116585621 CAAGATCCACACGGAACAC 59 116585645 116585663 CTGACTGAAGGCTTTCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc3 ENSRNOG00000025088 ENSRNOT00000037996 1 1 1 80 1 145758027 145759787 AGGACACCAATAGGAATCCAC 60 145759829 145759847 GTGTGACAGATGAGCAGGA 59 NA Rattus norvegicus 81 Tspear ENSRNOG00000001219 ENSRNOT00000038419 1 1 1 80 20 11528130 11528150 TACTCTGATCTTGGCTGTGTC 60 11526873 11528088 ACATCCGCCATTATGTCCA 59 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 2 2 2 80 2 178594127 178597006 CAGCCAGTATGATTTAGACTACG 59 178594069 178594088 CTGTAGGCCACAAAGTAGAC 58 NA Rattus norvegicus 81 Olr756 ENSRNOG00000048607 ENSRNOT00000040285 1 1 1 60 3 102620367 102620386 CTCATCAAAGGCACTATCCA 57 102620408 102620427 CCCAAAGAATAGCACAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 2 2 2 80 6 132255171 132258402 CTGAGTCAGTCAAGAAGTTCCT 60 132258443 132258461 CGAACACAGTCTGAATCGC 59 NA Rattus norvegicus 81 LOC498155 ENSRNOG00000032693 ENSRNOT00000042421 3 1 1 82 12 17824792 17830623 GGGATGGTCAGGATAGCAG 59 17824728 17824746 GAGGAAGTGAGGAGATGGG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027393 2 1 10 146 18 30006928 30185396 TTTGGACTCCTCTGAGAAGC 60 30188402 30188420 GTTGGCCACTGTTGATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Gga1 ENSRNOG00000008897 ENSRNOT00000063876 2 1 1 80 7 120111137 120111676 AGGAGAAGTCCAAGATGCT 58 120111718 120111738 CTTTGATGAGCTTATTGGCAG 58 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 1 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259353 52259371 ACCCTGAATCCAAGTAGCA 58 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 2 2 2 80 15 52257010 52259310 CTTTCTCCAGATGGTGTGC 59 52259353 52259372 AACCCTGAATCCAAGTAGCA 59 NA Rattus norvegicus 81 RGD1563349 ENSRNOG00000005818 ENSRNOT00000007723 3 1 1 80 4 21626722 21626741 ACTTCCTGCTTCAATGTTGG 59 21619595 21620001 CATTGATCTCATGTATGGCCC 59 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733,ENSRNOT00000071863 3 2 2 80 6 132431605 132431624 TTCGAGAACACAATGCACAC 60 132432520 132432870 GGTTCGAACACTTCTGATTCC 59 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000047259 ENSRNOT00000071158 2 1 1 60 10 12490194 12490214 GAACCCTTTCATCTATAGCCT 57 12490154 12490173 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lxn ENSRNOG00000013572 ENSRNOT00000018402 2 1 1 80 2 164631389 164631409 TATGTAATGTGGCAGAACTCG 58 164629205 164631349 GTTTCTTTGCACTTGCTTGAC 59 NA Rattus norvegicus 81 Mir33 ENSRNOG00000035547 ENSRNOT00000053670 1 1 1 60 7 123431614 123431632 GTGGTGCATTGTAGTTGCA 59 123431656 123431674 TGCACTGTGGAAACATTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il3 ENSRNOG00000026786 ENSRNOT00000031762 2 1 1 80 10 39621117 39622671 GCCAATCTGAGGAATAGTACC 58 39621057 39621077 GTCCTGAGAATCAAACTCCTC 58 NA Rattus norvegicus 81 Serpinb1a ENSRNOG00000016581 ENSRNOT00000059854 2 1 1 80 17 32905859 32905877 TGGAGCATCTCACACTCTG 59 32905918 32906931 GAAGTCAAGAACTCAGGAAGGA 60 NA Rattus norvegicus 81 Vom1r59 ENSRNOG00000030886 ENSRNOT00000047760 1 1 1 60 1 75166122 75166140 CCAAGTGACACCATCTTCC 58 75166163 75166182 TCCCTAGAACACCAAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga4 ENSRNOG00000004861 ENSRNOT00000006880 1 1 1 80 3 66224780 66225311 AATGGATATGTTGATGTAGCGG 59 66225714 66225732 AACAATCACTACAGGCCGT 59 NA Rattus norvegicus 81 Olr270 ENSRNOG00000060915 ENSRNOT00000077837 1 1 1 60 1 172793666 172793684 CCCAAGTCCAACTACTCCA 59 172793706 172793726 TCACCACCATGTAGAACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sacs ENSRNOG00000014509 ENSRNOT00000019551 2 1 1 80 15 41506675 41507562 GAAGAATTCCCAAGGTCCCT 59 41507605 41507623 AGCAGCTAGAAGATGAGGC 59 NA Rattus norvegicus 81 LOC100912067 ENSRNOG00000047398 ENSRNOT00000071217 3 1 1 60 8 41911371 41911389 ATGTTGCCATCTGTCAACC 59 41911413 41911431 AGGGAACATGTCACAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786,ENSRNOT00000045686 3 2 4 80 5 115084462 115086882 GAAATGGCAAAGTACCGAGAC 60 115084402 115084420 AAAGAAGAGGTCCAGGGTG 59 NA Rattus norvegicus 81 Mog ENSRNOG00000000775 ENSRNOT00000001008 2 1 1 80 20 2012623 2012643 TATTGTCCCTGTTCTTGGACC 60 2012685 2012983 AGAAACTGTCCTGCCAGTC 60 NA Rattus norvegicus 81 Olr1155 ENSRNOG00000032512 ENSRNOT00000048500 3 1 1 60 8 19332187 19332207 GTACCTCAAATGCTGAATCCC 59 19332147 19332166 CAGCCTCTTTCATGTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 2 2 2 80 2 197752729 197754353 GAGGAGAAGCAGGATACAC 57 197754396 197754415 TGGATATTTGGCCTTTAGCT 57 NA Rattus norvegicus 81 Igsf23 ENSRNOG00000024630 ENSRNOT00000074412 3 1 1 81 1 80856576 80856595 GCACGTATCTGTGTATAGCC 58 80852688 80856532 ACATTGTCTTGGCTCAAGG 58 NA Rattus norvegicus 81 Olr1740-ps ENSRNOG00000059858 ENSRNOT00000072074 3 1 1 60 20 1825959 1825977 TTGCATCTTCCTTGCTCTC 58 1826001 1826019 AGCTAACAGAAGGAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Art1 ENSRNOG00000020251 ENSRNOT00000027427 3 1 1 95 1 167202163 167202498 GAGTTCAGGTTCAAAGTTACTCC 59 167202551 167202571 CATACTGGTCATCAAAGGACG 59 NA Rattus norvegicus 81 LOC100361194 ENSRNOG00000033839 ENSRNOT00000048082 3 1 1 60 8 21271245 21271264 AAGATCCAGAGCATCAACCC 60 21271286 21271305 ACAGTGACCACAAACATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035357.1 ENSRNOG00000050264 ENSRNOT00000072406 1 1 1 75 12 10973385 10973404 CTGTCTTTCATTGTTCACCC 57 10973310 10973347 TTTGAACCTTGGGCAACTC 59 NA DesignRelaxed Rattus norvegicus 81 Zfp322a ENSRNOG00000017318 ENSRNOT00000023268 3 1 1 82 17 44026311 44031286 GGGTTCTTGTTAAGAAAGCC 57 44031331 44031349 ATGTAGACAGACGACAGGT 58 NA InUTR Rattus norvegicus 81 Fads2 ENSRNOG00000020440 ENSRNOT00000027756 1 1 1 80 1 226115178 226115371 TTTATCAGGTTCCTGGAGAGC 60 226115118 226115141 GTGATCAAGATCAATCTCCATGAC 60 NA Rattus norvegicus 81 Sucla2 ENSRNOG00000017481 ENSRNOT00000065195 2 1 1 80 15 55485789 55485809 ATCCTGAAGCCATTGTAAAGG 58 55485849 55488072 TCTTCTTTGCAAGTGTCACAG 59 NA Rattus norvegicus 81 Ftcd ENSRNOG00000001261 ENSRNOT00000001699 2 1 1 97 20 12817087 12817105 TGTACCTCTATGGTGAGGC 58 12816887 12817026 CTGTTTGAGCTTCTCAGGC 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000076614,ENSRNOT00000076797,ENSRNOT00000010065 1 3 4 116 7 116747595 116747613 ATGACTCGAGGAGAGGGAG 60 116747777 116747795 GTAGTCACCCTCCTTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Def6 ENSRNOG00000000502 ENSRNOT00000000597 1 1 1 80 20 7797015 7797655 CTAGACAAGGTGGAGGAGG 59 7797699 7797717 GTAGTTCTTCTTGGCCGTC 58 NA Rattus norvegicus 81 Ctsw ENSRNOG00000027096 ENSRNOT00000037404 3 1 1 80 1 220845085 220845179 GAAGCTACTGCAGTATTACCA 58 220845025 220845044 ACAGAATGGTTCACAAGGTG 58 NA Rattus norvegicus 81 Pmvk ENSRNOG00000020696 ENSRNOT00000028095 3 1 1 81 2 188784402 188784421 GTCTGGTGTTGCTGTTTAGC 60 188784464 188786660 TTACCTCCAAGTCTGCTCTG 59 NA Rattus norvegicus 81 Cd4 ENSRNOG00000016294 ENSRNOT00000021915 3 1 1 80 4 157385157 157387865 GTGGTGATGAAAGTGACTCAG 59 157385097 157385116 CAGTCTCATCTTGGGTGAGG 60 NA Rattus norvegicus 81 RGD1565785 ENSRNOG00000003748 ENSRNOT00000004977 1 1 1 87 X 54390860 54408054 TGGTGAAGAATGCTGTCAG 58 54408103 54408123 CCGGTTCATTATAAGATGCAC 57 NA InUTR Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332,ENSRNOT00000017322,ENSRNOT00000017412,ENSRNOT00000079688,ENSRNOT00000017417 2 5 5 80 1 20945440 20945460 ATATTTCAGGAGCATCCCGAG 60 20936515 20937635 CCAGGGAAGACTTCTCAGC 60 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 2 2 2 93 2 189583038 189583058 GAGAATCAAACTGCAAGTCTG 58 189584345 189584579 TAGGATAATGCCCATGGCT 58 NA Rattus norvegicus 81 Fitm2 ENSRNOG00000027434 ENSRNOT00000031904 3 1 1 60 3 159860607 159860626 GGCTACTGGTATCTGAAGTC 57 159860566 159860584 AAGTCAAACTGGAGCTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007130.1 ENSRNOG00000032668 ENSRNOT00000047883 3 1 1 60 1 282492537 282492556 GGCATATCAGAGTCATCCTC 57 282492496 282492515 ATCATAGGGCTTCTTTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071891.1 ENSRNOG00000049295 ENSRNOT00000032991 2 1 1 80 1 84613496 84613514 TGCTACTCAGAAGGTCCTC 58 84613557 84615099 GAAAGGCAACTTCCTACCAC 59 NA Rattus norvegicus 81 Ezh1 ENSRNOG00000020336 ENSRNOT00000027640 2 1 1 80 10 89125472 89126853 ACTTCATGGTGGAGGATGAG 59 89125411 89125431 TGAAAGTTTCGTCTTCCTCCT 59 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 1 1 1 71 5 164921119 164921137 GAGACATCACCTGCTGAGG 60 164919115 164921084 GAGGTCACAGCAAGTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0587.3 ENSRNOG00000051287 ENSRNOT00000075855 2 1 1 141 X 59275967 59275988 ATGATCTGTGATTCTGATCCTG 58 59275815 59275868 TCTTCTCCCAGAAGAAATTCAG 58 NA Rattus norvegicus 81 Pip5k1a ENSRNOG00000021068 ENSRNOT00000028609 3 1 1 80 2 196242144 196242162 TTCAAGACCTATGCACCTG 57 196241646 196242102 AAGGGAGTACAAGTAATCGTC 57 NA Rattus norvegicus 81 Slc26a4 ENSRNOG00000058692 ENSRNOT00000087300 2 1 1 80 6 50830271 50830290 GCTATTGCAGTGTCTGTAGG 59 50829017 50830229 GAAGGCAATGAATTCCTGGT 59 NA Rattus norvegicus 81 Lrp11 ENSRNOG00000014303 ENSRNOT00000019181 2 1 1 80 1 1720558 1720576 CCAGAGAAGAGGATCCAGC 59 1720618 1723341 TCCTGAGGAATTACTGTCTGG 59 NA Rattus norvegicus 81 Uroc1 ENSRNOG00000043404 ENSRNOT00000038251 1 1 1 80 4 122248438 122249134 CATTGAAATGAGGGCTTACCC 59 122249173 122249194 TTCATGATCATGTGCATGATGG 60 NA Rattus norvegicus 81 Exosc10 ENSRNOG00000010719 ENSRNOT00000014629 1 1 1 80 5 165384610 165386470 CTGAGGAACTGCCTAAGGAG 60 165386513 165386531 CATTGATCTGTTGCCGGAC 59 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000068093 2 1 3 80 4 118479249 118479268 AAAGAAGGTAGACGGCTCTG 60 118478483 118479208 TTTCGATTCATGTACTGCCTG 59 NA Rattus norvegicus 81 Olr1741-ps ENSRNOG00000056241 ENSRNOT00000085309 3 1 1 95 20 1829940 1829960 TCTACCACTGAGCTAAATCCC 59 1829809 1829827 ATCAAACCAGTCCGAAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000082899 1 1 2 87 X 156891021 156891039 CATGCTCCTGGTGTCTACC 60 156890600 156890618 CAGTAGTTCCTCCTGGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr567 ENSRNOG00000060426 ENSRNOT00000083330 3 1 1 93 3 75576155 75576518 CGATATCGTAAATTGCTCCTCTC 59 75576084 75576103 TAGGAACGTGGTAAAGAGGG 59 NA Rattus norvegicus 81 Rmdn3 ENSRNOG00000011690 ENSRNOT00000016356 3 1 1 80 3 110952137 110952958 AATAAGCTGGCGTATGGGA 59 110952075 110952095 CTCAGTAAGCTCAGTCATGTC 58 NA Rattus norvegicus 81 Gda ENSRNOG00000018282 ENSRNOT00000024775 3 1 1 80 1 238982654 238983416 GAAGTTCCTCTATCTAGGAGATGAC 60 238982598 238982616 GAGCTGGAGAATGGAACGA 60 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 2 2 2 81 1 38585743 38585761 CTGGTCACATTTCTGGAGC 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076220 2 1 3 60 5 57448099 57448120 GGAATGCTTCTTGAACTCTAGG 59 57448060 57448081 AATAGTCTAACTTCCTGGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir17-2 ENSRNOG00000035592 ENSRNOT00000053715 2 1 1 60 X 140117939 140117958 CAAAGTGCTTACAGTGCAGG 60 140117898 140117918 ATGTAAGAAGTGCTTGCAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdzd3 ENSRNOG00000008526 ENSRNOT00000011582 1 1 1 80 8 48579932 48580134 CAGCTCAATAGGAAGCTTTGTC 60 48579873 48579892 GTGACACTGTTCCTCTACCT 59 NA Rattus norvegicus 81 Mir741 ENSRNOG00000047862 ENSRNOT00000071499 3 1 1 61 X 151274419 151274440 TGCATTGGTCTACATAGATTGG 58 151274379 151274397 ATAGCGTGGCATCTTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 3 2 2 107 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199589 220199608 CATGACATCTGGCTTCACTC 59 NA Rattus norvegicus 81 Hgd ENSRNOG00000002701 ENSRNOT00000003645 2 1 1 80 11 66027045 66027064 GGATTTGGGAATGAGTGTGC 60 66026116 66027006 GCAGATCTGAGGATTATTCTGTC 59 NA Rattus norvegicus 81 Mrpl32 ENSRNOG00000015989 ENSRNOT00000021433 2 1 1 60 17 53102659 53102677 TGAAGCAGACATGGAGTGG 60 53104076 53104094 CTCTGGACTGCTAGTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Zmynd15 ENSRNOG00000019477 ENSRNOT00000046807 1 1 1 80 10 57069583 57069745 TTACTATGCAGAGGGATGGC 59 57069788 57069806 CCTTAGTCCCAGAGCTGAG 59 NA Rattus norvegicus 81 LOC100911639 ENSRNOG00000042394 ENSRNOT00000066667 1 1 1 71 X 83598010 83598033 CTGGTGATCGTAGTTTACTAACAG 59 83601210 83601228 CTCTTTGCCAGTCTCCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Emc3 ENSRNOG00000009934 ENSRNOT00000013488 3 1 1 80 4 145476518 145477025 CTTTGTCACAACTAAGGTCCC 59 145476458 145476477 AGTGTGAGCAGCTCTATTCC 60 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910,ENSRNOT00000090663 2 2 2 80 17 46575242 46615687 TGCATACATCCGGATTGTG 58 46575180 46575198 AGTTCTATACTGCTGCGTC 57 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 2 2 2 80 5 76678464 76679558 GCCCAGATAGCAATGAACC 59 76678402 76678421 AGCTTGATGTTTGGACAGTG 59 NA Rattus norvegicus 81 Lnx2 ENSRNOG00000000955 ENSRNOT00000001263 2 1 1 80 12 9774081 9774099 TTCAGGAAGTCTACCGGGA 60 9774140 9779454 AGTTGTTGACCTGAAGAATCTG 59 NA Rattus norvegicus 81 AABR07027902.1 ENSRNOG00000050847 ENSRNOT00000074309 3 1 1 80 17 48438242 48438260 GAGACTGAAGGAACACCCA 59 48444117 48444997 ATTTCTATACCCATGGCATGTC 58 NA Rattus norvegicus 81 Sema6b ENSRNOG00000045998 ENSRNOT00000070794 1 1 1 80 9 10943918 10943936 TTGGAGACAACATCAGTGG 57 10943980 10944575 GCATCCCATCTGAGAAGAG 57 NA Rattus norvegicus 81 Rn60_6_0657.1 ENSRNOG00000023194 ENSRNOT00000046071 1 1 1 60 6 56069945 56069963 TCTCGTGGACCTTACTCTC 58 56069903 56069922 CACTCTTGTTCTGAGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp38 ENSRNOG00000026880 ENSRNOT00000035084 1 1 1 80 19 30691545 30693493 TTGGCTCATACACAAAGGGA 59 30693536 30693554 TGACCTGGGAGTAAACCAC 59 NA Rattus norvegicus 81 Robo4 ENSRNOG00000050964 ENSRNOT00000060300 1 1 1 80 8 39888323 39888341 CAGGACAGTGTACTCACCC 59 39888385 39888531 TACACTGTTCGTGGGTGTC 60 NA Rattus norvegicus 81 Dhx57 ENSRNOG00000054272 ENSRNOT00000090688 1 1 1 80 6 2930010 2931246 CAGGAGAGGAGGCTAACAC 59 2929948 2929968 CTACATTTGGATACAGAGCGG 59 NA Rattus norvegicus 81 AABR07039936.1 ENSRNOG00000037770 ENSRNOT00000041508 1 1 1 80 X 88298480 88299460 TTGTGTTCGTGACTCTCAG 57 88299502 88299522 GAAATGCCATAGTGGTTTCAG 58 NA Rattus norvegicus 81 AABR07040944.1 ENSRNOG00000005430 ENSRNOT00000007194 2 1 1 70 X 115375070 115375110 TAACTCCTCAGGGACAGAG 57 115375018 115375037 CTAATGCTTCTTGTTGGCAG 58 NA DesignRelaxed Rattus norvegicus 81 LOC498152 ENSRNOG00000030354 ENSRNOT00000043992 1 1 1 82 12 17226323 17226341 ATCTCTTTCCAGACACGCC 60 17226386 17231914 TCTACCAGCTCTTGTAGCTG 59 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 1 2 2 80 7 75412480 75412498 CCTCCTAGCCAAATTGCTC 58 75411832 75412439 CATATTCTGGAATGGATGAGGT 58 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 3 2 2 80 7 75411782 75411802 ACCACCATTTAGTACGATGAG 58 75411644 75411741 GTTGATGTGTTAGCAACACG 58 NA Rattus norvegicus 81 AABR07051716.1 ENSRNOG00000060408 ENSRNOT00000075229 3 1 1 60 3 20007356 20007377 ATCCACTTTAGAATCTGGTGTC 58 20007398 20007416 ATAATCTGTCCCAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam129c ENSRNOG00000039357 ENSRNOT00000034589 2 1 1 84 16 20035108 20035735 TGTAACTTGGAAACGCCTG 58 20035783 20035801 CATCCCTGTAGACACCCTC 59 NA Rattus norvegicus 81 Azgp1 ENSRNOG00000001333 ENSRNOT00000001801 3 1 1 81 12 19198040 19199969 CAGTACAGGGTCTCACACC 59 19200014 19200032 ATACCTCCAGACTGCTCCA 60 NA Rattus norvegicus 81 Fam57a ENSRNOG00000007722 ENSRNOT00000010168 1 1 1 80 10 64363637 64365378 GTACCTATTTCACAGAAGCTCC 59 64365419 64365437 CGGAGTACTCAGTTCTGCT 59 NA Rattus norvegicus 81 Golt1a ENSRNOG00000002936 ENSRNOT00000080486 1 1 1 96 13 50539190 50539977 TTGGAAACCTGCTGTTCCT 60 50539112 50539131 CTTGTTCCCTTGAGCTTGTG 60 NA Rattus norvegicus 81 LOC100362038 ENSRNOG00000007419 ENSRNOT00000059780 2 1 1 80 10 20598628 20598646 AACCTTACAAACGGTGCTG 59 20598690 20600121 TGGAGGTTTCCAATTGTGC 59 NA Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674,ENSRNOT00000079707 1 2 2 80 13 48700332 48700350 TGCTCTTGGAAGATGTGGG 60 48700394 48703423 CGCTGCCAGAATCTTTCTC 59 NA Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000025451 1 1 2 164 10 14853756 14853774 TGCCTAACTGCGAAGTACC 60 14848903 14848921 TGGTTACCACTGGAAGCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066,ENSRNOT00000076242 1 2 3 91 13 50564112 50564130 TGAAATCTCCTGTGCCCTG 60 50559142 50559160 GTAGCTTCACAGCATTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Wrnip1 ENSRNOG00000017040 ENSRNOT00000023332 2 1 1 81 17 32948960 32950182 ATCTCAGCAGGACACTTTCC 60 32948898 32948918 GAAGGAAGGATTCTCAGTGGT 60 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853,ENSRNOT00000060020 1 2 2 80 12 19580692 19580842 CCTCAAGGTGCTGAATAGC 58 19580630 19580648 TAACTGGCGTTGAAGTTGG 58 NA Rattus norvegicus 81 Utp20 ENSRNOG00000005823 ENSRNOT00000008317 3 1 1 80 7 29332020 29334310 AGGAATGCGAGATATTTCCC 58 29331959 29331977 TGCAAAGACATTGGTCAGG 58 NA Rattus norvegicus 81 C4bpb ENSRNOG00000004125 ENSRNOT00000005505 3 1 1 80 13 47388027 47394716 GAAGATGGGTACCACCTAGTG 60 47387967 47387986 CTCACAGGTAGGATAGGACG 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 3 1 2 106 2 235312003 235321204 GTACAAGTGTAGCGACGGA 60 235321272 235322663 TGCCAATGTTCAGATGAACAC 60 NA Rattus norvegicus 81 Rn60_5_0814.8 ENSRNOG00000051121 ENSRNOT00000077051 2 1 1 60 5 78064203 78064222 GTCATAGCCCATCCCATACC 60 78064162 78064180 GGTGATTTCCGTTTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213,ENSRNOT00000047823 2 2 2 80 X 77519799 77519817 GCTCTTTAAACTGAGCCCA 58 77519651 77519756 TCACTGAAATTACTGCAGCC 59 NA Rattus norvegicus 81 Vom1r108 ENSRNOG00000048787 ENSRNOT00000068151 3 1 1 60 7 18121035 18121054 CCAGGCAATCACTATCAACC 59 18121076 18121095 GGTGGTTCTGTGCTTAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hcar1 ENSRNOG00000026661 ENSRNOT00000032274 1 1 1 60 12 38145387 38145406 CTCCTCATGATCTGCCTACC 60 38145428 38145447 AAATCCAATGCCTACGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps19l1 ENSRNOG00000031474 ENSRNOT00000041802 3 1 1 63 7 111722928 111722946 ACGATGCCTGGAGTTACTG 60 111722779 111722797 CTCTGATGAACTCCTGCTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085931 2 1 5 87 2 192539035 192566885 TTGTGCCATAGTGTCCTGAG 60 192566935 192566953 TTCTGCTGACATGGTGGAG 60 NA Rattus norvegicus 81 Sun3 ENSRNOG00000005105 ENSRNOT00000006818 2 1 1 80 14 89227865 89229642 CTGAAGTTCTAGATGAGGAAATGTC 59 89227809 89227827 CAGCCAGCTGTATTTGGTC 59 NA Rattus norvegicus 81 Laptm4b ENSRNOG00000006766 ENSRNOT00000008969 2 1 1 80 7 72958312 72960999 CATTTAAGGGCTACTTGATCAG 57 72961039 72961058 AAACCAGAACATCAGAGGAG 57 NA Rattus norvegicus 81 Vom1r97 ENSRNOG00000060112 ENSRNOT00000077949 2 1 1 60 4 121900071 121900092 TAGGATGACATTCAAGGATGGG 60 121900110 121900131 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688553 ENSRNOG00000037632 ENSRNOT00000035922 3 1 1 80 14 89257313 89258829 CAGACCTGATTTGTTGAAGCA 59 89258871 89258889 ATATACCAGTCTGGCAGGG 58 NA Rattus norvegicus 81 Rn60_6_1120.1 ENSRNOG00000000345 ENSRNOT00000000387 1 1 1 60 6 103808614 103808633 CTACTCCAGAGATGTCCTCC 58 103808573 103808592 TACCAAGTTGAGAACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmga2 ENSRNOG00000042460 ENSRNOT00000065137 3 1 1 97 7 65261912 65261930 AAAGCAGAGACCATTGGAG 57 65160038 65171781 GATGTCTCTTCAGTCTCCTG 57 NA Rattus norvegicus 81 Pdia5 ENSRNOG00000032327 ENSRNOT00000067984 2 1 1 80 11 68517088 68519259 TGCTTTACTCAGAATCTGAGGT 59 68519300 68519318 CTTGTCCTTTCACTGCCTG 59 NA Rattus norvegicus 81 Rftn2 ENSRNOG00000015594 ENSRNOT00000020910 1 1 1 80 9 61779291 61779309 ATACGCTGGCTGAATTTGG 59 61770137 61779247 CCAAGTTCCCTTCACTGTC 58 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 1 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Tns3 ENSRNOG00000025695 ENSRNOT00000012661 3 1 1 80 14 88790077 88790096 GAGGAGTCCTACTTGCACAG 60 88788386 88790039 GTTTAATACCAGGTAGTTGTCTCC 59 NA Rattus norvegicus 81 Cacng1 ENSRNOG00000003245 ENSRNOT00000004349 2 1 1 80 10 95923574 95923593 GAATTGCTCCTACTTCAGGC 59 95922368 95923533 ATGCTGTACTCCTTCTGAGTG 60 NA Rattus norvegicus 81 Nlrp4b ENSRNOG00000027705 ENSRNOT00000035435 1 1 1 80 1 73949307 73949328 CAATGCCTATGAGATCATTGAC 57 73948443 73949267 AGTTGGCTAACATGATAGCA 57 NA Rattus norvegicus 81 RGD1308147 ENSRNOG00000015523 ENSRNOT00000020794 3 1 1 103 17 53084251 53087268 CAGAACAAGATATGCCGTCC 59 53082503 53082521 ACAGAATCCACAGCATGTC 58 NA InUTR Rattus norvegicus 81 Tlr4 ENSRNOG00000010522 ENSRNOT00000014020 2 1 1 80 5 82593141 82598214 GCTGGATTTATCCAGGTGTG 59 82598257 82598275 AGTACCAAGGTTGAGAGCT 58 NA Rattus norvegicus 81 Ppt1 ENSRNOG00000012616 ENSRNOT00000017998 2 1 1 81 5 140545721 140548449 ACATCAAGGTGTCTTTGGAC 58 140548493 140548511 AGCGTTAAGTGACTTCCTG 58 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 1 2 2 80 15 103244246 103244264 TCGAAATCAGGATGACCGT 59 103235740 103244204 TAACCAGCAAAGTTTCCTGTG 59 NA Rattus norvegicus 81 LOC103690271 ENSRNOG00000052885 ENSRNOT00000091678 3 1 1 60 1 213258887 213258907 CATGGACATTATCTGCACCTC 59 213258927 213258947 CTCAGATAGTAGACCAACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037,ENSRNOT00000064331 1 2 2 80 17 55259595 55259614 CATAACTCCCATCTCATCCC 57 55259449 55259554 GCTTCAATATCTTCCAAGGGT 58 NA Rattus norvegicus 81 AC109844.1 ENSRNOG00000053259 ENSRNOT00000088899 3 1 1 60 1 213583667 213583686 GCCATTATAAATTCGGCACC 58 213586807 213586827 CCTTGTTCTGCTATTTCTGAC 57 NA DesignNoJunction Rattus norvegicus 81 LOC691368 ENSRNOG00000048301 ENSRNOT00000074883 3 1 1 60 3 102510580 102510600 TGATTTCTGACCTGTCCTCTG 60 102510622 102510640 ATCTGGAAGACACAACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2f6 ENSRNOG00000016892 ENSRNOT00000022898 3 1 1 70 16 19776952 19776971 AAGAGTTTCTTCAAGCGCAG 59 19774404 19774422 ATCTGACAGTCACGGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Slc51b ENSRNOG00000028889 ENSRNOT00000042353 3 1 1 86 8 70931523 70931542 CTATTCCATCCTGGTTCTGG 58 70930537 70931475 TTTCGATTTCTGTTTGCCAG 57 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975 1 1 2 118 14 75852245 75880317 CGACTCAGTAATTGGAAATTGG 58 75880396 75880414 GTCATGCTGTACAGCTCAG 58 NA InUTR Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 3 3 4 83 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820456 37820474 CACAGCATTGATGGCTTCC 60 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 1 3 4 87 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342958 76342976 ATCACATCGACACCAGTCC 60 NA Rattus norvegicus 81 Bcat2 ENSRNOG00000020956 ENSRNOT00000028474 2 1 1 80 1 101570907 101571000 TATGAAGGCAAGCAACTCCA 60 101571043 101571061 AGCCTTCAACTCCTTCTGG 59 NA Rattus norvegicus 81 Gspt2 ENSRNOG00000048817 ENSRNOT00000076205 3 1 1 82 X 63959427 63961124 GGAGCCTCAAGAGAAATTTCAC 60 63959366 63959384 TTCAGGAGTGACACGACTG 59 NA Rattus norvegicus 81 Aurka ENSRNOG00000004479 ENSRNOT00000055102 1 1 1 80 3 170368202 170370908 AGAGAACAGCTACCTACATCAC 59 170368143 170368163 TGATGTCTCTGTGGATGACTC 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000076518 1 1 3 86 14 47202206 47202224 TTCCAGTCTCTTCCCATGG 59 47201664 47202156 TGACGATGACTCTCCTCTG 58 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000076518 3 1 3 88 14 47202206 47202224 TTCCAGTCTCTTCCCATGG 59 47201662 47202156 AATGACGATGACTCTCCTCTG 59 NA Rattus norvegicus 81 Cyp3a18 ENSRNOG00000000969 ENSRNOT00000001285 1 1 1 80 12 10680538 10683769 GTGAGAAGACACAGATCCCT 59 10683810 10683830 ACACAAGCTTTAGGATGATGG 58 NA Rattus norvegicus 81 Chrna2 ENSRNOG00000017424 ENSRNOT00000023475 2 1 1 80 15 42823810 42824974 ACTCTTCGGTGAAGGAAGAC 60 42825016 42825035 AGCAGACGATAATGAACAGC 59 NA Rattus norvegicus 81 Pnmal2 ENSRNOG00000016863 ENSRNOT00000022610 2 1 1 60 1 78877451 78877470 GGAGGTAGAAACAGAAGTGG 58 78877491 78877511 TTCATCATCGTCATCATCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 3 2 2 121 1 400954 400973 TAATGCTGTGTATGCTGTGG 58 401057 401927 TAAGCAAAGAAGCCACCTG 58 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629,ENSRNOT00000081715 1 2 2 80 20 8291541 8291561 GATGATTTCTCGAAACCACTG 57 8291600 8296487 CCATTCAGACTCTTATTGTCCA 58 NA Rattus norvegicus 81 Aqp5 ENSRNOG00000051970 ENSRNOT00000084911 2 1 1 102 7 141251206 141251882 CCTCTCACTGGGTCTTCTG 59 141251948 141251966 CGATCATGGAGGCTCAGAG 60 NA Rattus norvegicus 81 Zmym1 ENSRNOG00000013855 ENSRNOT00000064015 3 1 1 83 5 145110310 145110333 CCCAGTCATAAGCAGTATAATGTC 59 145110108 145110274 GAAAGTGTACCTTGTAAGAGATCAG 59 NA Rattus norvegicus 81 Kctd19 ENSRNOG00000016760 ENSRNOT00000022497 1 1 1 80 19 37342601 37343137 GATGCAAAGGAAACCACAG 57 37342539 37342557 CCCTTTAGCCTTGTTCCAG 58 NA Rattus norvegicus 81 Slc12a2 ENSRNOG00000015971 ENSRNOT00000021921 1 1 1 80 18 52976993 52977015 GTGGAAAGATTGTAAGATCCGAG 59 52977055 52979353 AAAGTAGCCATCGCTCTCC 60 NA Rattus norvegicus 81 Grwd1 ENSRNOG00000021058 ENSRNOT00000056181 3 1 1 89 1 101818168 101818187 TGAAGAGGATGAAGAGGAGC 59 101816045 101818116 AGCCAAGATACCCGAACTC 59 NA Rattus norvegicus 81 Glis3 ENSRNOG00000014768 ENSRNOT00000019816 2 1 1 80 1 246472265 246476287 CTTGACACTAAACCTTATGCCT 59 246472206 246472224 CACGTGCTTTCTTAGGGAG 58 NA Rattus norvegicus 81 Ethe1 ENSRNOG00000019982 ENSRNOT00000027075 3 1 1 81 1 81470753 81471162 TCATGATTACCACGGGCTC 60 81471207 81471225 CTCCTCACAGCTGAGAGTG 60 NA Rattus norvegicus 81 Mcidas ENSRNOG00000039588 ENSRNOT00000076278 3 1 1 80 2 44867043 44868677 CTCATAGAGAATAACCAACTGCAC 60 44868716 44868734 CTGTACGTTCCTCTCCCTG 59 NA Rattus norvegicus 81 Acrbp ENSRNOG00000017399 ENSRNOT00000024618 1 1 1 80 4 157564671 157564884 ATTGGTACCAGATGGTGCT 59 157564928 157564946 CGATACTGAGCAAACTGGC 59 NA Rattus norvegicus 81 Map7d1 ENSRNOG00000010237 ENSRNOT00000065871 1 1 1 80 5 144251647 144251848 CGCAGAAACCAAGAAGCAG 60 144251487 144251508 CGAGTTTCTACAGCTTTCACAG 60 NA Rattus norvegicus 81 LOC100363675 ENSRNOG00000011119 ENSRNOT00000014787 1 1 1 80 16 885107 889791 CCGATTCCAATGATTCGCC 60 885045 885064 CATATTCCACTTGCTTGCCT 59 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 2 2 2 83 20 12658144 12658929 CGATTGCCTTCCAAGACTG 59 12658974 12658994 CATAAGGTTTCAGCCTCAAGG 59 NA Rattus norvegicus 81 RGD1310951 ENSRNOG00000016780 ENSRNOT00000022866 3 1 1 85 5 76926907 76984315 CATTCCAGCTTATTCTACTAAGCTC 60 76984358 76984376 TCACTGCACTGGTACACAG 60 NA Rattus norvegicus 81 AC139642.1 ENSRNOG00000017710 ENSRNOT00000023814 2 1 1 64 4 118431804 118431822 CAAGCAGAACACAGACAGC 60 118431850 118431869 AGACACAATGTGTCTGGCT 59 NA DesignRelaxed Rattus norvegicus 81 Atp8b2 ENSRNOG00000020822 ENSRNOT00000028246 1 1 1 80 2 189294170 189294188 GTACGTCCATCACCTACCA 59 189293995 189294127 GATTCCGAACTATGACCGAC 58 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 2 2 2 80 8 114935963 114935982 CCAGGACATCATGAGAAAGC 59 114935593 114935921 AAAGTGGAAACGGACTTTGG 59 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817,ENSRNOT00000030760 2 2 2 80 10 39674040 39676988 AAGTAGAGGACAGTGGTGG 58 39677032 39677050 GGGCATCGTCATAGTAGTG 58 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622 1 1 7 129 20 2515592 2515881 CTTCCTTTACCAGGGACCC 59 2517087 2517105 CAGGTCTGTACTGTCCAGC 60 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 1 4 7 80 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517418 TTAAAGCCTGAGTCTGCAC 58 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221,ENSRNOT00000078880 1 5 7 60 20 2517366 2517384 CCTGCCAAACATAGCTGAC 59 2517407 2517426 AGTGGTGTTTAAAGCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825,ENSRNOT00000036233 1 2 5 93 5 101656446 101656464 GTTAGGAAGGAGGCTGGTC 60 101656521 101660754 CTGAATTCTGAGCGCAGAG 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825,ENSRNOT00000036233 2 2 5 96 5 101656446 101656464 GTTAGGAAGGAGGCTGGTC 60 101656524 101660757 GTTCTGAATTCTGAGCGCA 59 NA Rattus norvegicus 81 Ccdc126 ENSRNOG00000009322 ENSRNOT00000012490 2 1 1 84 4 78995657 78995675 ATACGTGAAAGCTCTGGCA 59 78995723 79001285 CTTCAGATCGGCATAGCCT 59 NA Rattus norvegicus 81 Txnip ENSRNOG00000021201 ENSRNOT00000028793 2 1 1 80 2 198684860 198684878 GAGTGCAGAAGATCAGACC 58 198684920 198685034 GGACACTAACATAGATCAGCA 57 NA Rattus norvegicus 81 Ckap5 ENSRNOG00000016067 ENSRNOT00000021837 2 1 1 80 3 80470214 80470232 CTTTCGTCACTGCACTTCC 59 80470273 80471414 TCATTGATGTGCTTAAGGAGAG 58 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607,ENSRNOT00000085265,ENSRNOT00000067162 1 3 3 80 14 86228358 86228376 TGGGATACCCACCTTTCTG 59 86228174 86228314 GGGATGGGAAGTCATAGGC 60 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 2 2 2 80 8 68444763 68454430 TATCAATAACAGCCTCCTTTCC 58 68444704 68444723 TCTGTTTCTGTTGAGACTCC 57 NA Rattus norvegicus 81 Gpr27 ENSRNOG00000010880 ENSRNOT00000014455 2 1 1 62 4 132138650 132138668 GATGTTCTACGCCATCACG 59 132138694 132138712 TAACTGGCAACCACATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 1 3 3 80 7 63747924 63775051 TGGCCATTGACTTGATTGAC 59 63775093 63775112 AGATGATTCGAATGTGCTGG 59 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 2 3 3 80 7 63747926 63775053 GCCATTGACTTGATTGACGA 59 63775093 63775114 ATAGATGATTCGAATGTGCTGG 59 NA Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 3 2 2 80 X 105268446 105268464 GAGGCTTAAACAGCTCCAG 58 105268507 105270499 GGAACTTGAACAGAAGTGGA 58 NA Rattus norvegicus 81 Stk32a ENSRNOG00000027066 ENSRNOT00000031370 1 1 1 80 18 37652763 37652781 CTCTTCATCTGTGAGCTGG 58 37652822 37679813 ATTGTCTGGTTTCATATCCCTG 58 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 1 2 2 95 2 198114370 198114388 CTATCTTGCCCACCCTACC 59 198112898 198114311 GTAGAGGTGGAAGCCACAG 60 NA Rattus norvegicus 81 Uckl1 ENSRNOG00000050277 ENSRNOT00000020695 2 1 1 80 3 177066389 177066409 GTGTGAGAATCATCACCACAG 59 177066252 177066347 CACCAAAGTTCCCAATGCC 60 NA Rattus norvegicus 81 Vip ENSRNOG00000018808 ENSRNOT00000025477 3 1 1 80 1 42173851 42173871 GACTACAGTAGACTTCTGGGT 58 42173913 42174275 GATGCTACTGCTGATTCGT 58 NA Rattus norvegicus 81 LOC100909608 ENSRNOG00000047964 ENSRNOT00000072360 3 1 1 82 1 706029 707192 TGATACAGCAGATATGGAGCAG 60 707235 707253 CTCTTTGGAGACACTGGCT 59 NA Rattus norvegicus 81 Vsig4 ENSRNOG00000038132 ENSRNOT00000032121 2 1 1 82 X 65371877 65373846 GCAGAACATTCCAAGAGTATGTC 60 65371501 65371522 CACTCTTGTGGTTTCTTCAGAG 59 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152,ENSRNOT00000003255 3 2 2 80 11 66777519 66777538 CTCTAAAGGATCAGCTCCGA 59 66776573 66777477 CCTTGTCATGTTCAAGCCTG 60 NA Rattus norvegicus 81 Adam28 ENSRNOG00000014518 ENSRNOT00000058715 1 1 1 80 15 50415689 50416810 CCGCAAATCATGGATAGCTG 60 50415628 50415646 TTGACACATGCTGATGCTG 59 NA Rattus norvegicus 81 Clpp ENSRNOG00000047052 ENSRNOT00000072001 2 1 1 171 9 10051840 10053374 CATCAATAGCCCAGGTGGT 60 10051687 10051705 GATTCTGGAATTGGGCAGC 59 NA Rattus norvegicus 81 AABR07073045.1 ENSRNOG00000060344 ENSRNOT00000072795 1 1 1 60 4 120413771 120413792 TATCAAGCTGGTTTCAAAGCAC 60 120413732 120413750 TCCACCCTTTGTGTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem141 ENSRNOG00000028254 ENSRNOT00000067479 1 1 1 80 3 2844624 2844644 TGTCAGAAATGCAGCAATCTG 60 2844066 2844585 CTAGTTGTTGTGATCTGTGCTC 59 NA Rattus norvegicus 81 Tmem141 ENSRNOG00000028254 ENSRNOT00000067479 3 1 1 81 3 2844624 2844644 TGTCAGAAATGCAGCAATCTG 60 2844065 2844584 TCTAGTTGTTGTGATCTGTGCT 60 NA Rattus norvegicus 81 AABR07066416.1 ENSRNOG00000031939 ENSRNOT00000043269 2 1 1 80 9 8629549 8629567 GAGGCAAAGAGGTTCTGTG 59 8629264 8629506 GATCAACCTATCTCCCTGCT 59 NA Rattus norvegicus 81 LOC100360244 ENSRNOG00000029808 ENSRNOT00000045115 3 1 1 148 15 61873263 61873282 AACGACAAATAGCAAAGGTG 57 61872669 61872687 GTTCTCCACGGATAGTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 1 2 2 80 1 229049450 229050279 CAGATCCAAAGTTCACAATCC 57 229050321 229050339 TGTTCTCTTGACCTTGACC 57 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 1 2 2 80 12 17567032 17570926 GGGTCTGAGAATAATAGCTACCT 59 17566974 17566992 ACAGCAGTCTTCCTGACAC 60 NA Rattus norvegicus 81 Sdhc ENSRNOG00000003163 ENSRNOT00000004228 2 1 1 80 13 89513059 89514452 CTCTGTATCAGAAATGCTGCT 58 89512999 89513019 GGAACTCGTGTTCTTATTCCA 58 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 1 2 2 105 9 100929097 100929115 AAATCGGCAAGCTTCTGAG 59 100927054 100929030 ATTAATGGCACTTGTTCCCAG 59 NA Rattus norvegicus 81 LOC302192 ENSRNOG00000049503 ENSRNOT00000051066 3 1 1 87 9 463452 463471 GAAGTGTCAATTCGAGAGGG 58 462042 463402 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Olr1874 ENSRNOG00000046620 ENSRNOT00000028572 3 1 1 60 1 228262567 228262585 TCATCGTCCTTACCATCCC 59 228262525 228262546 GCATTCACAATGAAGACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkcdbp ENSRNOG00000017914 ENSRNOT00000024119 3 1 1 88 1 170317717 170318276 CCTGCTCTTCAAGGAGGAG 60 170317647 170317665 CTAGCACCAACTGGTCCTC 60 NA Rattus norvegicus 81 Rpl18 ENSRNOG00000021035 ENSRNOT00000028555 2 1 1 80 1 101702001 101702019 ACAACAAGGACCGAAAGGT 60 101702062 101702276 ACCTGTACAGCTTGACTAGC 60 NA Rattus norvegicus 81 Bet1 ENSRNOG00000011008 ENSRNOT00000014810 1 1 1 100 4 29083477 29085097 CTGTTAGCTGAAATGGATTCAC 58 29083398 29083416 AATTTCGTTTGGCTCCCTC 59 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256,ENSRNOT00000012655 1 2 2 80 4 84439759 84439777 ACTGGTGTGAATACTGTGC 58 84439819 84443580 GTACGTTTAACCCACAATCTG 57 NA Rattus norvegicus 81 Ccl12 ENSRNOG00000029768 ENSRNOT00000031626 2 1 1 80 10 69477723 69478124 GGGAAGCTGTGATCTTCAG 58 69478168 69478186 TCATGGAGTCCTTAACCCA 58 NA Rattus norvegicus 81 Crym ENSRNOG00000061215 ENSRNOT00000088482 2 1 1 81 1 189954256 189955779 TCTCCTTCAAGGAGGTGAG 58 189954193 189954211 CGAACATCTCCTTGCACTG 59 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076938,ENSRNOT00000009870,ENSRNOT00000084632 3 3 5 61 X 63803806 63803824 TTGAGTTTGAGCTGCTGAC 58 63803763 63803782 GATCCTGGACCAAGGATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684988 ENSRNOG00000028021 ENSRNOT00000034694 1 1 1 60 3 4341386 4341407 ATTCCGCCTGATTCTAATTGAG 59 4341347 4341370 CTTAGTCTTATAGTATCGAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il5ra ENSRNOG00000005954 ENSRNOT00000008403 3 1 1 80 4 138803024 138803042 ACAAGGTTGTTTCCACCAG 58 138798907 138802983 AGGAGGTTTCTCATATTCAGTC 57 NA Rattus norvegicus 81 Cmtr2 ENSRNOG00000017102 ENSRNOT00000022952 2 1 1 60 19 41428860 41428879 CAAATCCTTTCTTGAGCGAC 58 41428819 41428842 CTCTAACTGGTATCTATGGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgre1 ENSRNOG00000046254 ENSRNOT00000073926 3 1 1 80 9 9439041 9442925 TCATCACGATCAACTCTGC 58 9438979 9438998 AGACTTCTGAGTTGACACTG 57 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076539,ENSRNOT00000076320 2 3 5 81 13 77942362 77942382 TATGAATATGCAGATGAGCGG 58 77942425 77945180 CAGCCATTTCCTGAAGGTC 59 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 2 1 1 65 15 82081336 82081354 AATGAACAAGCCAGTGAGG 58 82081288 82081307 AAATGGTTGGCAGAGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 1 2 2 80 15 36940199 36942780 ACTTGGAGACCCTTTCAAGAG 60 36942821 36942840 AAACAGGTTCCAGTAGAGCA 59 NA Rattus norvegicus 81 Pcnt ENSRNOG00000001276 ENSRNOT00000048218 3 1 1 80 20 12958928 12961562 AGGAACAGAATGGGTCATGG 60 12961605 12961623 CGAAGTCTGACCTGAGGTG 60 NA Rattus norvegicus 81 Mdfi ENSRNOG00000014987 ENSRNOT00000020432 3 1 1 180 9 15179094 15179112 GACCACCTCTCAGAACCAG 59 15179256 15183654 GGACACAGCAATCTTCCTG 59 NA Rattus norvegicus 81 LOC685849 ENSRNOG00000012068 ENSRNOT00000016068 1 1 1 80 5 75004562 75004580 TTCGTGCCCAGTATGAAGG 60 75000260 75004520 GCATGATCCCTTCTTTAGGGA 60 NA Rattus norvegicus 81 Wdr73 ENSRNOG00000010664 ENSRNOT00000032294 1 1 1 80 1 142713635 142713930 CACATACAGCTCAGATACAACC 59 142713576 142713597 CCACAGAAAGCAAAGGTATCTG 60 NA Rattus norvegicus 81 RGD1559622 ENSRNOG00000025219 ENSRNOT00000035057 2 1 1 82 2 149720666 149722360 GGAATAGAATACAGACTTGCTCC 59 149720606 149720625 TGGAGAAAGAACTTGGTTGC 59 NA Rattus norvegicus 81 AABR07000137.1 ENSRNOG00000050129 ENSRNOT00000075346 3 1 1 80 1 1390943 1390962 GGTGTGCAATGATTTGAACC 58 1390596 1390900 TGCAAGGTGTGATTACCTG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000092100 2 1 11 80 6 99014347 99016451 GTGCAACAGGCTTCTTCAG 60 99016493 99016513 TTTATCAAAGTATGCCGTGCC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000077127 1 1 11 103 6 99058012 99058606 CCCAACCACAGATTCTGGA 59 99058673 99058691 ATCCTCTGGGTAACACTGC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000079448 3 1 11 80 6 99062152 99062171 GACGAACTGCAAGCTTACAC 60 99062212 99063800 TGTCATACTTCCCTGTGTCTG 60 NA Rattus norvegicus 81 Rn60_X_0656.1 ENSRNOG00000051036 ENSRNOT00000076678 3 1 1 60 X 64676434 64676455 GTGTCAATGTTGAACCTTTCTG 59 64676395 64676413 ATGTTGACATTGGCCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892,ENSRNOT00000025871,ENSRNOT00000065483 2 3 3 80 18 57728703 57743435 TTTCCCTGGATAGGTATTATGC 58 57743476 57743494 TTAATGCGATGCGTAGAGG 58 NA Rattus norvegicus 81 LOC684499 ENSRNOG00000032728 ENSRNOT00000040211 1 1 1 93 11 67332862 67336700 TCATTAAGATGGATGTAGGGTG 58 67336754 67336772 CGGTAACCATGAAGTTCCA 58 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075993,ENSRNOT00000075879,ENSRNOT00000076766,ENSRNOT00000088037 1 6 6 60 15 36972818 36972836 GATGCATTTAGCCCAGCAC 60 36972776 36972799 TATTCATACCCATCATTGGAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map1s ENSRNOG00000018781 ENSRNOT00000025385 2 1 1 81 16 20274374 20275224 CAGCATAGTGAAAGGGCAG 59 20274311 20274329 CTTGTCTGAGGGATTCAGC 58 NA Rattus norvegicus 81 LOC497934 ENSRNOG00000006513 ENSRNOT00000008507 3 1 1 63 10 55642722 55642740 CATCTCCAGCCCACTAGAG 59 55642766 55642785 GACAAAGTGAGTAAGGTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 3 2 2 80 13 90451831 90452416 AAGAACTTGAGTTCATCACGC 59 90451771 90451792 TGGCGTTGATACAATAAGTGAC 59 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 1 2 2 80 19 33334780 33340697 TAGCCAGAGAAGGAAATGAC 57 33334719 33334737 ATTCTCCAGAAGCCAAGTG 57 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324,ENSRNOT00000068328 2 2 2 80 3 162492296 162492315 GGCTGAGGATTGAGATTGAG 58 162491466 162492253 TGGTCAACTCCAAGTTGTG 58 NA Rattus norvegicus 81 Pxmp4 ENSRNOG00000016975 ENSRNOT00000022914 1 1 1 80 3 150092569 150098073 ATAGCCAGATCAACATGTACCT 59 150092510 150092528 CAGGGATGTAGCCCTTCTC 59 NA Rattus norvegicus 81 Cox17 ENSRNOG00000038951 ENSRNOT00000059541 2 1 1 81 11 64968285 64968303 TCAGGAGAAGAAGCCTCTG 58 64966038 64968241 TCCTTTCTCAATGATGCACG 59 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 1 1 1 60 10 11913405 11916799 TTGAGGATTTGAACTTGACAGG 59 11916817 11916838 TCTAGGCTTAACTTCTGACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1424 ENSRNOG00000055773 ENSRNOT00000041113 3 1 1 60 10 44146260 44146281 CTGCTGTCTATACCTACATGCT 60 44146221 44146239 ACCACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb12 ENSRNOG00000004197 ENSRNOT00000086265 2 1 1 130 X 64714609 64715033 CTACAAGCCCGAGCTACTC 60 64714497 64714517 AGGTAGCTAATCAACACAGGG 60 NA Rattus norvegicus 81 Get4 ENSRNOG00000001293 ENSRNOT00000001745 2 1 1 80 12 17471826 17471964 CCCATGTACAACGAGTACCT 59 17471765 17471783 GCCTCCATAGGAGGATGTC 59 NA Rattus norvegicus 81 Pam16 ENSRNOG00000004608 ENSRNOT00000006314 2 1 1 103 10 11153292 11153564 GGTGCAGAAGAATTATGAACAC 58 11153789 11153807 CATCTAGGCGTTCCTTTGC 59 NA Rattus norvegicus 81 Rn60_5_0814.24 ENSRNOG00000051211 ENSRNOT00000076017 1 1 1 84 5 77481369 77482095 CTTGATGGGAAATCAAGATCCC 59 77481306 77481324 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 F2 ENSRNOG00000016325 ENSRNOT00000022233 3 1 1 80 3 80535063 80535082 CTGGGACAAGAACTTCACTG 59 80534693 80535022 TCAACATTCCGCTCATATCTG 58 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809,ENSRNOT00000003739,ENSRNOT00000083655 1 3 3 80 X 75164512 75166631 ACTGAAGAGACTATTCTTGGTG 58 75164453 75164472 TGTTGACAATCTATGTGCGA 58 NA Rattus norvegicus 81 Hipk2 ENSRNOG00000007034 ENSRNOT00000064891 1 1 1 80 4 66470437 66470455 GATGAGACAGCAACCAACC 59 66464193 66470393 CAGGTGGAGACATTTCTCG 58 NA Rattus norvegicus 81 Ccdc183 ENSRNOG00000017044 ENSRNOT00000061874 3 1 1 80 3 2833694 2833715 TGGAGTCATCAACTCTAAAGGA 59 2833050 2833656 GGAAGGTTTCTATCATGTCCTC 58 NA Rattus norvegicus 81 Map2k1 ENSRNOG00000010176 ENSRNOT00000013933 3 1 1 96 8 69164610 69164629 GAGAAGATCAGTGAACTGGG 58 69162818 69164552 GGTGAATTAGCTTCCTAGCC 58 NA Rattus norvegicus 81 Il17b ENSRNOG00000019695 ENSRNOT00000026679 1 1 1 80 18 57013811 57013832 AAGAAGTGTGAAGTCAACTTGC 60 57013872 57015686 GTCGTGATTGATGCTGTAGC 60 NA Rattus norvegicus 81 Wdr53 ENSRNOG00000001754 ENSRNOT00000002392 3 1 1 80 11 71788067 71791780 ATATGCAGGTAATGCTGTGG 58 71788006 71788025 TTTCCTCTGTTTCATCCTCC 57 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000068476,ENSRNOT00000067661 2 3 3 80 1 46894146 46896580 GCCTTCAAGAAGTTGCTCTG 60 46896621 46896641 TTTGGCAAACTGATGGAAGTC 60 NA Rattus norvegicus 81 Snx29 ENSRNOG00000002294 ENSRNOT00000003150 3 1 1 80 10 3865333 3883849 ATCGGAAACAAGGATGCCA 60 3865271 3865289 GACCTTGTTCATGACGCTG 59 NA Rattus norvegicus 81 Tceal1 ENSRNOG00000002387 ENSRNOT00000044372 1 1 1 92 X 107370507 107370525 TGGTCGAGAAGGAAAGCAG 60 107371315 107371334 GCTCTGTGGTTGTTCTTCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07001512.1 ENSRNOG00000017412 ENSRNOT00000023387 3 1 1 80 1 48565511 48565550 AAGAGAAACGTTAGCAGATGGA 60 48565452 48565471 GTCTTCACAAGGGCTTTCTC 59 NA Rattus norvegicus 81 Minos1 ENSRNOG00000042696 ENSRNOT00000064418 3 1 1 80 5 157548192 157548973 CTTTAAGAGAAGAAAGTGGCCA 59 157548133 157548152 AAGTCATGCTGACAGTTGGA 60 NA Rattus norvegicus 81 Ccdc117 ENSRNOG00000010706 ENSRNOT00000015627 2 1 1 80 14 85764968 85767428 TGATTGAGTCTATGAGCCGT 59 85764907 85764926 GCTTTGGCTTCTCAGAAAGG 60 NA Rattus norvegicus 81 Ccdc117 ENSRNOG00000010706 ENSRNOT00000015627 3 1 1 80 14 85767544 85768041 AGATCGAGGACAGGATAATTGAC 60 85767486 85767505 AAAGGACAAGACTTGGGAGG 60 NA Rattus norvegicus 81 AABR07029559.1 ENSRNOG00000052567 ENSRNOT00000084710 3 1 1 90 10 34016129 34016151 GCACTAAGGATAGAGAATGAACC 59 34015209 34016080 AGTCTAATCAGGAAGTCCGG 59 NA InUTR Rattus norvegicus 81 Saysd1 ENSRNOG00000006341 ENSRNOT00000008391 2 1 1 129 15 4658401 4658419 CTTGAGGTGGAAAGCAAGC 60 4663395 4663414 GTTTGTCAGGAAAGACTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 3 2 2 80 15 89270273 89270292 GCATGGAATAAACCCGTAGC 60 89268520 89270233 CTCTTCCTGAAATTCCTCTTCG 59 NA Rattus norvegicus 81 Syce1l ENSRNOG00000031097 ENSRNOT00000045250 1 1 1 80 19 45956275 45956413 GAGAATTGTGGTCTGAAGACAG 59 45956454 45956472 CCCTCTGTCATTCTGAGCT 59 NA Rattus norvegicus 81 Mfi2 ENSRNOG00000001739 ENSRNOT00000002373 1 1 1 80 11 72143114 72143931 GAGCTGTATGCTGAGGAGG 60 72143052 72143070 GGTGAAGGAGTAGGAGCTG 59 NA Rattus norvegicus 81 Rnaseh1 ENSRNOG00000008584 ENSRNOT00000011819 1 1 1 80 6 47923739 47924204 CCATCAACGGGATAACTAACTG 59 47924244 47924263 TGTTGATCACGTCTTTCCCT 59 NA Rattus norvegicus 81 Pigx ENSRNOG00000033623 ENSRNOT00000043365 1 1 1 80 11 71950267 71950287 CCACATAAGAAGGATGGAGAC 58 71950328 71953315 AATTGGGAACTCTTGGTCAC 58 NA Rattus norvegicus 81 Pdx1 ENSRNOG00000046458 ENSRNOT00000071942 3 1 1 73 12 9500736 9500754 AAATCCACCAAAGCTCACG 59 9496885 9496904 TTATTCTCCTCCGGTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 S100b ENSRNOG00000001295 ENSRNOT00000001743 3 1 1 80 20 13135385 13135403 AGCACAAGCTGAAGAAGTC 58 13131846 13135342 CCTGCTCTTTGATTTCCTCC 59 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 2 2 2 91 3 111023759 111036880 CAGGAACTCTTCCAGGGTC 59 111023686 111023704 TGAGTCCTTTGCTCGTCTG 60 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 1 2 2 80 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864999 117865019 AAGACCTTGTAGAAAGCTTCC 58 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 2 2 2 80 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864998 117865019 AAGACCTTGTAGAAAGCTTCCT 60 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 3 2 2 80 17 54670697 54670716 ACACCTTTGCATACAGAACC 59 54668771 54670655 ACTGTGTCACATGTCTTTGC 59 NA Rattus norvegicus 81 LOC100912287 ENSRNOG00000050484 ENSRNOT00000073844 2 1 1 60 4 1702853 1702873 CTGAATTCTCACCTTCACACC 59 1702813 1702837 GGTCTACAAAGGACAAGTTAAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp394 ENSRNOG00000000983 ENSRNOT00000001302 2 1 1 110 12 11182872 11182891 AATCTCTGACCTGGGAAGAG 59 11182964 11185618 CTTTGGTTTCCAAGCCAGG 59 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 3 2 2 81 3 93642685 93642706 CAATAAGTCAGAGCAAGATGGG 59 93642745 93645856 CATCAGCATCTGAAAGATGTGG 60 NA Rattus norvegicus 81 Gngt2 ENSRNOG00000006108 ENSRNOT00000008011 2 1 1 81 10 83657973 83658344 GTGATCCGATTTCCAAGACAG 59 83658387 83658405 ATGCCTTTCAGAAGAGGGT 59 NA Rattus norvegicus 81 Kcnc1 ENSRNOG00000055401 ENSRNOT00000089488 3 1 1 81 1 102445952 102445971 ACCACAGTACTCAGAGTGAC 59 102446013 102453187 CCATTCAGTTTGGAATCTGCT 59 NA Rattus norvegicus 81 Psmd10 ENSRNOG00000057649 ENSRNOT00000083150 2 1 1 80 X 112323348 112323458 AAGAATAGGCATGAGATTGCTG 59 112323289 112323309 TGCTGTAGCATCATAATGGTC 58 NA Rattus norvegicus 81 Olr337 ENSRNOG00000021074 ENSRNOT00000028608 1 1 1 60 1 228685254 228685272 ATTCCCATGTTGAACCCGA 59 228685294 228685314 TCAATGCTTCTCTGATCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf9 ENSRNOG00000045595 ENSRNOT00000071515 1 1 1 90 9 9911779 9911797 CTGTTTCCCACATTGGCTG 59 9910682 9911387 TTACTCAGCGATGCTTGGT 59 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 3 2 2 90 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529439 18529459 CAAGTTCCTGTAGTTTCTGCC 59 NA Rattus norvegicus 81 Irak4 ENSRNOG00000005965 ENSRNOT00000007932 1 1 1 80 7 135818841 135820551 AGTAATGGCCAAGTGTCAG 58 135820594 135820613 TACACTAAGCACAGGTTGTC 58 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613,ENSRNOT00000079263 3 2 2 81 13 91844349 91847240 CTCTCAATGTCAACGACCCT 60 91844287 91844305 ATGAAAGCCACGATCCCTC 60 NA Rattus norvegicus 81 RGD1562319 ENSRNOG00000039216 ENSRNOT00000060025 3 1 1 82 12 19562053 19562071 TTAGTGGGTCACTCGAGTG 59 19562117 19563172 TGGTCAGTCACATTCCCAG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 2 2 2 80 16 20801209 20801227 TTCCAAACAGTTGTGCTGG 59 20801040 20801167 GATCTCCATTCCCTGATTGAG 58 NA Rattus norvegicus 81 Hcar2 ENSRNOG00000026653 ENSRNOT00000032249 3 1 1 60 12 38161245 38161264 GGAACTGTGACATCTACTCC 58 38161285 38161305 TAGGTAAAGCTAAGGGTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plin3 ENSRNOG00000048834 ENSRNOT00000070978 2 1 1 80 9 10777390 10779437 CAGACACAGAACTAGCCCT 59 10779481 10779499 TCCTTTCCTGTCTCTGCTG 59 NA Rattus norvegicus 81 Rn60_X_0594.1 ENSRNOG00000051096 ENSRNOT00000076001 2 1 1 60 X 58512806 58512824 TCTTTGCCTTGACTGAGCA 60 58512846 58512866 TGTTTGTGGAAGGTATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dedd ENSRNOG00000003779 ENSRNOT00000005147 2 1 1 80 13 89720461 89720962 AGCAGACATGTGACATCAG 58 89721005 89721024 TAGAGAAGACATTGCCTTGC 58 NA Rattus norvegicus 81 LOC100911403 ENSRNOG00000045611 ENSRNOT00000074966 1 1 1 80 1 227218107 227218128 TGGATTCACATTCATGGAAGAG 59 227218169 227220591 TCACAATCTGCACAATCCC 58 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 1 3 4 80 7 140416206 140416224 TCACAGTATGGGACGTAGG 58 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 3 2 2 100 10 62023378 62025293 AAGCTGTTGTGTATCTTGGAG 58 62022810 62022829 GACTTTGCTATATGGGTCGT 58 NA Rattus norvegicus 81 AABR07004681.1 ENSRNOG00000013711 ENSRNOT00000036482 1 1 1 80 1 149901637 149901662 ATACTTTCACATTCCAGCTGTC 59 149901698 149901721 GCCTCAATAAAGAGGGAATATCAC 60 NA Rattus norvegicus 81 Trim58 ENSRNOG00000026430 ENSRNOT00000047700 3 1 1 80 10 44274012 44274031 AAGAAGGAAATGGAGGAGGC 60 44274072 44277226 CATCTCCACTTTCTCCTTCCA 60 NA Rattus norvegicus 81 Pggt1b ENSRNOG00000003541 ENSRNOT00000004723 3 1 1 80 18 40205176 40213293 TTCCCACAGAAGACAGGTC 59 40205114 40205135 TTGATGGGTTGAATGGAATACC 59 NA Rattus norvegicus 81 Rpl37a ENSRNOG00000023385 ENSRNOT00000030761 3 1 1 90 9 80003821 80003839 CCAAGATGAAGAGACGAGC 58 80003891 80004888 GAAGTGGTATTGTAGGTCCAG 58 NA Rattus norvegicus 81 Anapc2 ENSRNOG00000011295 ENSRNOT00000015099 3 1 1 80 3 2491921 2492696 TTCCACAAGTGGATCGAGAG 60 2492739 2492757 TGGAGAAGTTGGTCTGCTG 60 NA Rattus norvegicus 81 RGD1561552 ENSRNOG00000037827 ENSRNOT00000057460 2 1 1 249 X 79066862 79066883 GGATGAAAGCTAATGAAGAACC 58 79066121 79066140 AATGCCATGTTAGGTTTGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tuba1a ENSRNOG00000060728 ENSRNOT00000083156 1 1 1 80 7 140638960 140638978 CTTCAGTGAGACAGGAGCT 59 140638767 140638919 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Inppl1 ENSRNOG00000019730 ENSRNOT00000066915 1 1 1 80 1 166903767 166903870 CTTCCTTCGATTTAGTGAGGAG 58 166903708 166903726 CAAGCATATGTGTCTCGGG 58 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880,ENSRNOT00000025680 3 2 2 81 1 212714229 212714778 TACTCTCCTTCCTGATATGGC 59 212714820 212714839 CAAGTGTACTTGGCCTTCAC 59 NA Rattus norvegicus 81 Nkpd1 ENSRNOG00000043378 ENSRNOT00000067272 1 1 1 124 1 80430048 80431081 AATCATGACGCTGATGCAG 59 80431169 80431187 GAAACACCAGGAACCACAG 59 NA Rattus norvegicus 81 Olr782 ENSRNOG00000047084 ENSRNOT00000074043 1 1 1 60 3 103171958 103171980 GTTATCTAAAGCCCTTTCCACTC 59 103171920 103171939 CCCAAAGAACAAGATGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 3 2 2 80 11 61662513 61667171 TGAAGGCTGTGACAGATGG 60 61667213 61667233 CGATCAGAAATCGTATCCGTG 59 NA Rattus norvegicus 81 MGC95210 ENSRNOG00000024780 ENSRNOT00000037371 1 1 1 80 10 102209724 102210641 TGTAGTTACGGAGCTGCAG 60 102210685 102210703 TCTCTGCAGTCTCTGTCAC 59 NA InUTR Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000090637,ENSRNOT00000057843 2 2 2 70 15 83711212 83712317 CTGTGATTATGATGGTTGCAC 58 83712349 83712367 TATGAGTCCTCAGGTGAGC 58 NA DesignRelaxed Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496 1 1 2 80 2 187366502 187367714 TACTGCTTCCGAGACTCTG 59 187366440 187366458 GACAATGGCCTCTAGTCCA 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953,ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 2 4 4 130 4 85597912 85597930 CTTCAACTTCCTGCCTGAC 59 85599377 85601225 AAATCTCCGTCCTCACCTC 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953,ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 3 4 4 133 4 85597909 85597928 CATCTTCAACTTCCTGCCTG 59 85599377 85601225 AAATCTCCGTCCTCACCTC 59 NA Rattus norvegicus 81 Dap ENSRNOG00000010747 ENSRNOT00000014439 1 1 1 92 2 84287175 84287193 ATTGTGCAGAAACACCCAC 59 84287249 84326563 TGTTGGTTTAGGAGGGCTG 60 NA Rattus norvegicus 81 Treml4 ENSRNOG00000042360 ENSRNOT00000048975 1 1 1 80 9 14701287 14701308 ATACTTCTTAGTTCTGACCACC 57 14700478 14701247 GAACTTTGGTTTCTGTGCTC 58 NA Rattus norvegicus 81 Sh3tc2 ENSRNOG00000019305 ENSRNOT00000026174 2 1 1 80 18 57293829 57293851 ATTGACTGAGGACATATCCTCAC 60 57293891 57297943 GAGAGCACCAGGTCTTGAG 60 NA Rattus norvegicus 81 Bfar ENSRNOG00000003151 ENSRNOT00000004217 1 1 1 80 10 1487869 1491900 GGAATACAAGGCTGTCAACC 59 1491941 1491961 TATAGCAAGCCAAGTCTTGGT 60 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000018148 ENSRNOT00000024427 3 1 1 82 15 5863392 5863410 AGAGATGGGACCACATGAC 59 5862974 5863346 CCCATCAAGTTCCAGAGGA 59 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 2 2 2 80 10 11886381 11886402 TACACAAGTTGCATACATCCTC 59 11885670 11886346 CTTTCTAATAAGAGGGAACCTATGC 59 NA Rattus norvegicus 81 Six2 ENSRNOG00000058827 ENSRNOT00000079027 1 1 1 182 6 8955486 8955504 CTGCTTCAAGGAGAAGAGC 58 8953330 8955340 CTGTTCTCCCTTTCCTTGG 58 NA Rattus norvegicus 81 Tpsb2 ENSRNOG00000018611 ENSRNOT00000025220 2 1 1 90 10 14723660 14723819 TGATAGTGACGAGCCTCTC 58 14723873 14723891 GTGGTACTTCCGATCACAC 58 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 1 2 2 80 18 4077878 4077899 TCAGAATAACTCATACGTCCAG 58 4077940 4078976 CTTGCTACAGTCTCTGCTC 58 NA Rattus norvegicus 81 Reg3g ENSRNOG00000006579 ENSRNOT00000008665 1 1 1 80 4 109530986 109531201 TGGTTTGATGCAGATCTGG 58 109530924 109530943 AAAGGAAGCTTCAGATCCAC 58 NA Rattus norvegicus 81 AABR07004232.1 ENSRNOG00000048904 ENSRNOT00000075481 3 1 1 60 1 131585137 131585156 AGAACACATGGAAACAACCC 59 131585096 131585114 ATCTACCGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apcs ENSRNOG00000009086 ENSRNOT00000012092 1 1 1 88 13 91427237 91427365 CCTTTGCTCAGACAGACCT 59 91427167 91427185 TTCTAGCCATGGGATCAGC 59 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 1 2 2 80 13 91732553 91735119 GAACGTGATGCAAGAGTGG 59 91732491 91732509 CGGCATCTGATGTCAAAGG 59 NA Rattus norvegicus 81 Npepps ENSRNOG00000023095 ENSRNOT00000031045 1 1 1 80 10 85141746 85146835 GAAGTTAAGGCTTTCTTCGAGAG 60 85141688 85141709 CAGCAGGATATTCTCACAACAC 60 NA Rattus norvegicus 81 Fam207a ENSRNOG00000001225 ENSRNOT00000001640 2 1 1 205 20 11887996 11888014 GATCAGAAGCTCAGGGAGG 59 11893992 11895678 TCTTCCTCAAGAAGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 3 2 2 80 18 51845895 51859194 GGACACTAGTGTCATTTAGGT 57 51845835 51845854 GAATGAGGAGAATCACCCTC 58 NA Rattus norvegicus 81 Hk2 ENSRNOG00000006116 ENSRNOT00000008813 2 1 1 80 4 113561697 113563163 CATCCTCACTTTGCCAAGG 59 113561635 113561653 CTCGGATTCCAGGAAGGAC 60 NA Rattus norvegicus 81 Tctex1d2 ENSRNOG00000001758 ENSRNOT00000002397 2 1 1 80 11 71598262 71601516 CAGCAAAGGTTTAGACCCTC 59 71598201 71598221 AGAATATTCAGCACCTGTCAG 58 NA Rattus norvegicus 81 AABR07071101.1 ENSRNOG00000008363 ENSRNOT00000011090 1 1 1 80 8 100260094 100260123 GTTACTGGGTCTGCATCTG 58 100260165 100260185 CATGTAGACCACGTAGTTGAG 58 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655 1 1 2 85 13 91958407 91958425 GTTCTGTTGCTTCTGCCAC 60 91958471 91959718 CTTCTGAGGCTTAACTTGAGGA 60 NA Rattus norvegicus 81 Olr34 ENSRNOG00000030554 ENSRNOT00000042081 2 1 1 60 1 150311077 150311100 TGCCTATGTATATCTAAGACCTCC 59 150311116 150311137 AGAAAGAGTCATATCCTCAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 1 1 1 60 X 105419285 105419309 GATAATTCCTTAAGGCACATACCTG 60 105419325 105421347 GCAATTTCAATGTGGCTTCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Elfn1 ENSRNOG00000022767 ENSRNOT00000033551 1 1 1 132 12 16753145 16813484 CAGCAGAGAACACTTCAGG 58 16753031 16753049 GAGAATGGCTCCCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Carhsp1 ENSRNOG00000002610 ENSRNOT00000003514 2 1 1 83 10 7050011 7052409 CACATCTCTGATGTGGAAGG 58 7052455 7052473 ATTCTTGGGCGGGATAGAG 59 NA Rattus norvegicus 81 Polg ENSRNOG00000032293 ENSRNOT00000044567 3 1 1 80 1 141175072 141175090 TGTGGACAGGACAGAAGAC 59 141174884 141175029 CATCGAGACTTCCTTGAAGC 59 NA Rattus norvegicus 81 Psmd14 ENSRNOG00000061129 ENSRNOT00000082769 1 1 1 80 3 47635631 47638327 ACAATCAGGAACTGGTGTC 57 47638369 47638389 CCTGTTTGTTTCAGCATATCC 58 NA Rattus norvegicus 81 Traf4 ENSRNOG00000013169 ENSRNOT00000018468 2 1 1 108 10 65421733 65424590 AGTTCCTCAGTGAAGGAGTC 59 65420869 65420887 ATAGCCAAGCCTAACACCT 58 NA Rattus norvegicus 81 Spx ENSRNOG00000053700 ENSRNOT00000087378 1 1 1 95 4 176630208 176630226 ATGCTCTATCTGAAGGGCG 59 176630961 176632348 GTTTCGTCTTTCTGGAGGC 59 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000043788 1 1 2 80 1 163554886 163556667 CCAACAGACAACAGTAAAGGA 58 163554826 163554846 ATAGGTACTGCCATTTGACTC 58 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 1 2 2 80 X 116785107 116785125 GATGAGAATCGCAACTTGC 58 116781122 116785065 GATTTCAGTCTCCACCTTCTG 59 NA Rattus norvegicus 81 Dppa1 ENSRNOG00000043293 ENSRNOT00000067312 2 1 1 80 10 31698143 31698163 GGACCTCTATATTGGAACCTC 57 31695644 31698102 TGTCTGTACTTTAGGACAGC 57 NA Rattus norvegicus 81 AABR07061378.1 ENSRNOG00000059069 ENSRNOT00000073799 3 1 1 60 4 120040987 120041011 CCCAACTATAAGCTTATTACTCCAG 59 120040951 120040971 AGGAACCTCGAATCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504,ENSRNOT00000064252 2 2 2 118 8 115153058 115153076 TATGCACTACCCTTCCTCG 59 115153158 115153517 AGAGTCGGAGTCTTCACAC 59 NA Rattus norvegicus 81 Rfxank ENSRNOG00000033318 ENSRNOT00000041221 2 1 1 84 16 21034196 21034214 CTTGAAGCACTCCACAACC 59 21034262 21034871 GATAGACAGGGAGTCCAGG 58 NA Rattus norvegicus 81 Rn60_X_0652.2 ENSRNOG00000038169 ENSRNOT00000058100 2 1 1 60 X 64220205 64220226 ACATCACCTACGAGAAAGATCC 60 64220166 64220185 TCTTTGTAGTCGTCCAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 1 2 2 80 4 129502963 129502983 GGATACTGTAAACTTGACCGT 58 129499975 129502921 TAGCTCAGCAAACCAAGAC 58 NA Rattus norvegicus 81 Ints7 ENSRNOG00000004263 ENSRNOT00000005715 3 1 1 80 13 110306301 110306320 ATCGCTTTGCTGAAAGTTCC 60 110306363 110307807 CAGAGCAAGCTTGATGCTG 60 NA Rattus norvegicus 81 Pef1 ENSRNOG00000013972 ENSRNOT00000018742 3 1 1 94 5 148337320 148340910 GACCTTATGGACAGGGTGG 60 148340966 148340986 TGAGATATAGCCACTGTGGTC 59 NA Rattus norvegicus 81 Ccndbp1 ENSRNOG00000011379 ENSRNOT00000015472 3 1 1 81 3 112957392 112957410 GGAAGGAAGGATCAGGTCG 60 112957454 112958452 GAACCAAGTCATCCACACTG 59 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 3 2 2 82 1 80497929 80498800 TTAGCCCTCCCAGTTATGC 59 80496566 80496584 GGACTCGGAACTGGATTCC 60 NA Rattus norvegicus 81 Rusc2 ENSRNOG00000045843 ENSRNOT00000072869 3 1 1 81 5 58878706 58878812 GTCTGAATGGTCAGATCGC 58 58878856 58878875 GGAGGCTTCTCAGTTAAGGA 59 NA Rattus norvegicus 81 LOC678798 ENSRNOG00000022737 ENSRNOT00000039130 3 1 1 80 1 201813144 201813162 CAATTGTGGCCACCATGAG 60 201813860 201815876 GACTGACTTCCCTCTGTCG 60 NA Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076034 1 1 2 67 X 71272043 71272061 CTGCATACATTCCCTGGGA 59 71272092 71278015 TATACCCAGTGTCTCCCTG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076816 3 1 2 85 X 71272091 71278500 CCAGGGAGGTGTGAATGAG 60 71278549 71278567 CCAATGGCTGTAGAATGCC 59 NA InUTR Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 1 3 3 80 1 149150765 149151496 ATTTGACTCTTGGCAGATGG 58 149150704 149150725 TGATTCAGGTTCACTTTGTCTC 59 NA Rattus norvegicus 81 Lhfp ENSRNOG00000014153 ENSRNOT00000019057 2 1 1 109 2 142429877 142460807 AGTTTGACTTGGGCAAGTG 59 142460880 142460898 CTTCTTGCCTGAGAAGCAC 59 NA Rattus norvegicus 81 LOC100362658 ENSRNOG00000023233 ENSRNOT00000074820 2 1 1 80 1 99489238 99493853 TGTTGGTGTCAAGAAGTGGA 60 99493894 99493914 CTTTCTGGTTTGAAATGCTGC 59 NA Rattus norvegicus 81 Procr ENSRNOG00000019330 ENSRNOT00000055254 3 1 1 80 3 151287563 151287581 ACCTGTCCCAGTTCAACAG 60 151287622 151288438 AGCTAACAGTCAGAGGAAAGAC 60 NA Rattus norvegicus 81 Gmeb1 ENSRNOG00000010910 ENSRNOT00000014506 1 1 1 80 5 150439856 150439874 GGAAATGAAGGCGAGAACC 59 150434348 150439814 TTCATAAATCCCTTGCTGCAC 59 NA Rattus norvegicus 81 Spata17 ENSRNOG00000002504 ENSRNOT00000073142 1 1 1 80 13 105573375 105616910 GCAATTAGGGAGGCTTTGG 59 105573313 105573331 CTTCTCCTCCAGTTCCAGG 59 NA Rattus norvegicus 81 P3h1 ENSRNOG00000053991 ENSRNOT00000084651 1 1 1 80 5 138283266 138283284 GAAGGGCCCTATGACTACG 59 138283326 138284338 GACGTAATGATCTGTGATGGC 59 NA Rattus norvegicus 81 Glb1l ENSRNOG00000019243 ENSRNOT00000026081 1 1 1 80 9 82402961 82403172 CTGGAATGGTGCTGATGAC 59 82402899 82402917 CCTGCTTCAGATATGGGTG 58 NA Rattus norvegicus 81 Astn2 ENSRNOG00000060105 ENSRNOT00000084147 2 1 1 80 5 81195024 81231965 AGATGGCCTTTACAAGTTCAC 59 81194964 81194984 GTTCTTAGAGTCACTGTGCTG 59 NA Rattus norvegicus 81 Astn2 ENSRNOG00000060105 ENSRNOT00000084147 3 1 1 80 5 81544431 81544450 CATGGTTACAACAACCGGAC 60 81474655 81544391 CTTGATGAAGTTGTTCTCCCTG 59 NA Rattus norvegicus 81 Rn60_X_0712.1 ENSRNOG00000051290 ENSRNOT00000076792 1 1 1 60 X 70234915 70234933 CTGAATGGGAAGCTCACTG 58 70234955 70234975 CCACAACAGATACATTGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 1 2 2 80 7 143137696 143137715 TCAAGGCTCAGTACGATGAC 60 143137401 143137655 TTATTTCCTCACACTTGGTGC 59 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498,ENSRNOT00000002645 1 2 2 80 11 77484340 77484359 CAACTATGTCTGTCACGCTC 59 77476471 77484298 CTTGGCGGTATGACTTTCTG 59 NA Rattus norvegicus 81 Olr582 ENSRNOG00000046448 ENSRNOT00000043371 1 1 1 60 3 75835116 75835136 CAGTAATGGCCTTTGATAGGT 58 75835157 75835176 ATGTCCACAGCATACAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552619 ENSRNOG00000027803 ENSRNOT00000035759 3 1 1 81 10 41490286 41491076 TTTGTGAGGCACTCATACCT 59 41490224 41490242 ATGTTTCCAGGAAGCTCCA 59 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000076860 3 1 3 82 13 77626337 77626355 GGAGCAGTACCATGAAGTG 58 77626399 77626795 GAAATGAAGGAAGCAAACCTG 58 NA Rattus norvegicus 81 AABR07051708.1 ENSRNOG00000054828 ENSRNOT00000044455 1 1 1 60 3 19772154 19772173 AGCAAGTCAGGGTATTAGCA 59 19772194 19772214 AATCGTTCCATCTGGTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il3ra ENSRNOG00000001325 ENSRNOT00000001792 3 1 1 60 12 18537796 18537814 TCACTCTGCAGATCAACCA 59 18537572 18537679 GTCTCATATACCATCTCAAGCT 57 NA DesignRelaxed Rattus norvegicus 81 AABR07059201.1 ENSRNOG00000021533 ENSRNOT00000036164 3 1 1 60 4 8502257 8502277 CCGATGTTCATCCTGAATACC 59 8502217 8502235 CGAAGAGAAACTCCTCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem186 ENSRNOG00000027087 ENSRNOT00000030290 2 1 1 100 10 7077560 7077578 AGTTAGCGCATTAACCTCC 58 7077642 7078928 GAAGGAGGAAAGCCATGAG 58 NA InUTR Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264,ENSRNOT00000003946 3 2 2 96 X 70445601 70445725 CACTTCAGATGGTTGCTAACC 59 70446425 70446446 CTCTTCACTTCAAAGTCAACCC 60 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000076811,ENSRNOT00000016468 1 3 3 80 14 85965016 85965375 CCATTATGGAGATGGTACAAATGAG 60 85960945 85960963 GACAGCATTTCCTGAAGCC 59 NA Rattus norvegicus 81 Olr587 ENSRNOG00000050681 ENSRNOT00000073336 1 1 1 60 3 75923412 75923432 GTACAAAGCCATAAACCAACC 58 75923372 75923390 GTAGCATACCCTGTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arrdc2 ENSRNOG00000019009 ENSRNOT00000025956 1 1 1 130 16 20353232 20353394 CTTCCAGCTGCCTATCTCC 60 20353486 20353506 CAATGACAGTGAACACCTTCC 60 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 2 3 3 80 X 104883879 104884155 CCTGTTGTTAGTTTCAGATTGG 58 104884196 104884214 TTGGTCTTGGTATTCGCAG 58 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 1 2 2 80 1 141565983 141566142 TGATAATAACCCGATCCACCC 60 141565923 141565941 TTCCACTCTTCCTCACCAC 59 NA Rattus norvegicus 81 Snrnp48 ENSRNOG00000013756 ENSRNOT00000018508 3 1 1 80 17 27274667 27274687 ATCACTACCAAAGCACATGGA 60 27274400 27274630 GGATTGTACATTTCATCCTCTTCC 60 NA Rattus norvegicus 81 Pbld1 ENSRNOG00000000386 ENSRNOT00000000434 1 1 1 80 20 27112841 27112860 GAGGGAAATGAACCTCTCAG 58 27112148 27112800 CCAAAGCAAGAACTTTGTGAG 58 NA Rattus norvegicus 81 Aldh1b1 ENSRNOG00000011497 ENSRNOT00000015281 2 1 1 124 5 61382367 61382385 CAGAATTTGAGCCTGAGCG 59 61385285 61385303 GAATATGAGGTGGTCCTGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509,ENSRNOT00000004716 1 2 2 80 13 92304488 92304509 GAAACTGAAAGAGACCTATGCC 59 92304548 92306167 AGCAACTTCTCCTCTATCCAG 59 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429,ENSRNOT00000080485 1 2 2 80 3 150382692 150384237 CCAAGATCAAGTTAAAGAGCAG 58 150384278 150384296 AAAGGGCATCAATGTTGGA 58 NA Rattus norvegicus 81 Zbtb40 ENSRNOG00000022039 ENSRNOT00000033670 1 1 1 80 5 155371048 155380214 AGAAGGAGACCGTAATGGA 57 155370986 155371004 CATCATGCACTTTGTCCAG 57 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 1 2 2 80 3 113260892 113261146 GTATCAGCTCAGAGGTTCAC 58 113261186 113261207 GTTCTAAAGTTTGTCCACTCAG 57 NA Rattus norvegicus 81 Bmp1 ENSRNOG00000010890 ENSRNOT00000046054 2 1 1 80 15 52177604 52181133 CCACTTCTTCTCAGACAAGGA 60 52177544 52177563 TAGCTGCCAAATGTGTTCAC 59 NA Rattus norvegicus 81 Bmp1 ENSRNOG00000010890 ENSRNOT00000046054 3 1 1 80 15 52181163 52181182 GTGTGGAGTTCAAGTCTGAC 59 52177593 52181122 TGGAACATTCATCCTTGTCTG 58 NA Rattus norvegicus 81 Ldha ENSRNOG00000013009 ENSRNOT00000017468 2 1 1 80 1 102903860 102903880 AGAGATGATGGATCTTCAGCA 59 102903919 102904816 GCAGTCACACTATAATCTTTGC 58 NA Rattus norvegicus 81 AABR07017140.1 ENSRNOG00000027633 ENSRNOT00000029140 1 1 1 80 15 12599600 12599620 AGACTTGTGAAGGAACTTCCA 59 12589039 12599561 CTGTATAGTTGCAGTCTGTGAG 59 NA Rattus norvegicus 81 Rpp30 ENSRNOG00000018718 ENSRNOT00000025412 3 1 1 80 1 254697268 254697288 CAGATTTGGATCTAAGAGCGG 59 254697330 254698633 CTGAGTATCCCAGGTGAGC 59 NA Rattus norvegicus 81 Gnas ENSRNOG00000025889 ENSRNOT00000035916 2 1 1 176 3 172376063 172376081 ACTAATGGGTGACTCCGTC 59 172427180 172428037 GGGTAATAGACTCCATCGCT 59 NA InUTR Rattus norvegicus 81 Katnal1 ENSRNOG00000000916 ENSRNOT00000001219 1 1 1 80 12 7253514 7253533 TGGGTATGACAAGGATCTGG 59 7253573 7253940 GCTATATCATCCCAGTGAATGC 59 NA Rattus norvegicus 81 Ctxn2 ENSRNOG00000037146 ENSRNOT00000056054 1 1 1 60 3 117416583 117416601 CTTCTACATGGGAGGACGA 58 117416625 117416643 GCAAGTGCATACTCAAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1d ENSRNOG00000005982 ENSRNOT00000089875 3 1 1 106 14 100421375 100422189 GTTGTTGCAGAAGTTGGAC 58 100422554 100422574 GATTAACTCCTTGAGTTGCCA 58 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 3 3 3 81 16 20112541 20112559 TTCTTCTGCAAGGAGGTGG 60 20112602 20112707 CAAAGTCTAACGTGATGGGTC 59 NA Rattus norvegicus 81 Olr183 ENSRNOG00000027423 ENSRNOT00000037868 2 1 1 60 1 169892808 169892827 GATTCACCCTTCATCCTTCC 58 169892767 169892785 CCAGAACTGTGACTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltbp3 ENSRNOG00000020813 ENSRNOT00000028262 3 1 1 80 1 221111561 221111581 AATACCAATGGTTCCTACCGA 59 221111618 221113106 CTCATCTATATCTTGGCACTTCCT 60 NA Rattus norvegicus 81 Cav3 ENSRNOG00000005798 ENSRNOT00000007601 2 1 1 94 4 144383180 144397818 AGGACATTGTGAAGGTGGA 59 144397876 144397894 GAAAGTGGTGTAGCTCACC 58 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 1 2 2 80 7 143521609 143521627 ACAAAGGTCGCCTACAGTC 60 143520635 143521569 TGATCTCTTCCTCATACTTGGTC 60 NA Rattus norvegicus 81 Serpinc1 ENSRNOG00000002783 ENSRNOT00000046512 1 1 1 80 13 78811251 78811807 TCCAGAGCAACCTTCTATAACC 60 78811846 78811866 GTAACAAGCATTCTCACAGCA 59 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 1 1 1 76 20 2485184 2485202 CTTACCTGCTACGGGAGTG 60 2485242 2485782 ATAAGAGCGCAGCAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Thrsp ENSRNOG00000012404 ENSRNOT00000016540 2 1 1 84 1 162385155 162385173 AGAAAGCACAGGAGGTGAC 60 162381998 162385112 GTAAAGTGATCTTCCATAGAGTCG 59 NA InUTR Rattus norvegicus 81 AABR07012299.1 ENSRNOG00000029177 ENSRNOT00000044052 2 1 1 120 2 192416616 192416634 TGTCTTACCAACAGCAGCA 60 192416717 192433867 CACTTTGGAGGTGAACAAGG 59 NA Rattus norvegicus 81 Ninl ENSRNOG00000027747 ENSRNOT00000068689 3 1 1 80 3 146723973 146723991 AAATCACGCTGCTATCCAG 58 146723246 146723930 TTGATTTGATCACCCTGCTG 59 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 2 2 2 110 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126479 GAGCCTTATATCATTTGCCCTG 59 NA InUTR Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038,ENSRNOT00000006492 3 3 3 80 6 108870260 108870280 TTTGATAGGCCATCCTATGAC 57 108870322 108871656 AGTTCTTCGTTCTCCTCCA 58 NA Rattus norvegicus 81 Olr184 ENSRNOG00000017341 ENSRNOT00000023279 1 1 1 60 1 169903405 169903423 ACTGGTGTTTCTCCTCCTG 59 169903363 169903383 ATAAGTGTGAGGGATGATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 3 2 2 80 2 165522866 165522885 GCTATGGCAGTTGCTAATCG 60 165522696 165522827 GTACCGAACTTTATCGATTTCCC 60 NA Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 1 2 2 80 3 93705601 93706202 ATGGATTTAGAGGAGGATATGATGG 60 93705545 93705566 TGAACTGAGACTGTGTATAGCC 60 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 2 1 1 62 13 42261250 42261269 ACGTTCAAGACATGTGTCAG 59 42221388 42261225 ACTTCCGGTACATGATCCC 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 3 1 1 98 10 13537937 13537955 CATCCCAGTGGTTATGGCT 60 13537764 13537875 CTCCTGTAGAGGGTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07064392.1 ENSRNOG00000046896 ENSRNOT00000072117 3 1 1 89 6 78817533 78817552 CATCGTTCGGTTCCTAACTG 59 78816816 78817483 ATAATGGTGTACCCAGCTCTG 60 NA Rattus norvegicus 81 Akr1c3 ENSRNOG00000017531 ENSRNOT00000023739 2 1 1 80 17 69761235 69767073 GCAACCGAAGAGAATCTCAG 59 69767115 69767134 ACAATCAATATGGCGGAACC 59 NA Rattus norvegicus 81 Snrpd3 ENSRNOG00000050410 ENSRNOT00000075517 3 1 1 80 20 14093714 14093732 GACCAACACTGGTGAAGTG 59 14083494 14093671 ACTGTGATGTTGGACATCTG 58 NA Rattus norvegicus 81 Mir146b ENSRNOG00000040448 ENSRNOT00000062201 2 1 1 61 1 266089498 266089516 GCCCTGAGAACTGAATTCC 58 266089541 266089559 CAGAACTGAGTCCCTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl13 ENSRNOG00000004401 ENSRNOT00000005815 1 1 1 85 7 95294735 95294753 CTACTTATGGCATGCTGCC 59 95293661 95294689 TTCTGGAATATCCTCATCAGGA 58 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 2 2 2 80 8 71648835 71648855 GACTTGTTTGACCTCTGTGAC 59 71648895 71651347 CTCCATTCGAGAAAGCAACTG 60 NA Rattus norvegicus 81 Rn60_X_0660.5 ENSRNOG00000051113 ENSRNOT00000076162 3 1 1 60 X 65149895 65149913 CCTGGGTCCTAAGTCTGTG 59 65149936 65149955 GAGATCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000087695 2 2 4 80 20 2503940 2503960 TATGTGCAATTTCCCATACCC 59 2503999 2505249 GAAGTTTCTCCTTGTACTCCTG 59 NA Rattus norvegicus 81 RGD1560455 ENSRNOG00000037838 ENSRNOT00000049779 2 1 1 80 X 78259572 78281489 TCAGTGAGAAATCACGATGC 58 78281529 78281550 ACTGTTTGTTCTGTTACTTCCC 59 NA InUTR Rattus norvegicus 81 Drd5 ENSRNOG00000005338 ENSRNOT00000007074 1 1 1 60 14 77221371 77221389 GAGGACGGAGAACTGTGAC 60 77221329 77221348 GATGAGTGACGAGGAGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RSA-14-44 ENSRNOG00000042954 ENSRNOT00000068400 1 1 1 60 4 96832047 96832065 TGGTGATTGTGGGAGATGG 59 96832088 96832107 TCCTTGCTGAAGACGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr343 ENSRNOG00000029027 ENSRNOT00000049665 2 1 1 60 1 229804511 229804534 TGTCTTCCTTCTCATCTATCTCAG 59 229804474 229804494 AATCAACCCTACCATTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd5 ENSRNOG00000033206 ENSRNOT00000041163 2 1 1 80 6 108100500 108100521 AGGAGATCTTCAAGAATTCACC 58 108100225 108100462 CTAATATGCCTTCATAGGACCC 58 NA Rattus norvegicus 81 LOC100912540 ENSRNOG00000047474 ENSRNOT00000045173 1 1 1 60 3 74815108 74815129 TAAGCCTCTGTTCTATACGGTC 59 74815069 74815087 GATTACCACAAGCACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stxbp2 ENSRNOG00000000994 ENSRNOT00000001322 3 1 1 80 12 2190147 2190165 TCGCCATGTCTGAAATGAG 58 2190207 2190771 GGGAAGAGCCTATAAGTACCT 58 NA Rattus norvegicus 81 Fbxo3 ENSRNOG00000009549 ENSRNOT00000014478 2 1 1 80 3 93989524 93991653 ACCGAATCAGGATTGAAATGTC 59 93991693 93991712 TTGTTATCCTCCAGTAGCGA 58 NA Rattus norvegicus 81 Il2ra ENSRNOG00000047647 ENSRNOT00000073144 3 1 1 80 17 70508418 70508438 AGTGAAGAATCTCAAGGAAGC 58 70507664 70508377 TTGTGAGAAGTCTGTGTTGG 58 NA Rattus norvegicus 81 Fam179a ENSRNOG00000026344 ENSRNOT00000036374 2 1 1 80 6 23385147 23388607 GCCATGCATCAGCTAACTC 59 23385085 23385103 CCATCTCCTCTTCCTCCTC 58 NA Rattus norvegicus 81 Zfp609 ENSRNOG00000015977 ENSRNOT00000021554 1 1 1 80 8 71240340 71240358 ACAGCCAGTCATATGACCC 59 71236810 71240299 GATAGGAACCTGGGTAGTTCTG 60 NA Rattus norvegicus 81 RT1-M10-3-ps ENSRNOG00000051398 ENSRNOT00000039155 3 1 1 82 20 2292014 2292032 AAGTTGTGCACTTGTCACG 59 2291740 2291971 GGTGTGATAATCATTGCTGTCC 60 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000030243 ENSRNOT00000044209 3 1 1 80 3 26025773 26049600 AGTGACATCCTGTGAATTTCC 58 26025713 26025734 CATTTGTTGCTGATACATCTCC 58 NA Rattus norvegicus 81 Pxk ENSRNOG00000008024 ENSRNOT00000010763 3 1 1 80 15 18584291 18591994 AACAGCTTGCAGATTACAGG 59 18584230 18584248 GGCTATGAATTCACGGTCC 58 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 1 2 2 80 14 14986672 14987806 TGTTTACAGGGAATGCATCAG 59 14986612 14986633 TCTTAACTAGATCTGCTCCTCC 59 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163,ENSRNOT00000078020 3 2 2 80 3 3413735 3414511 GCACCTATTAAGATGAGTGGC 59 3413675 3413695 CTCAATGCTGATCATCTCCAC 59 NA Rattus norvegicus 81 Kazn ENSRNOG00000014322 ENSRNOT00000019447 3 1 1 81 5 160675555 160677163 ACCCTATTGTACAGTCACTAGAG 59 160675496 160675514 GAGATGGAGCCAAATCCCA 60 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 2 2 2 118 7 75578735 75579367 CAAGAAAGGAATTGTGGACCA 59 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Slc39a11 ENSRNOG00000031213 ENSRNOT00000042156 1 1 1 80 10 101983505 101983526 TGAAGAAGTCTGATCTCAAGGA 59 101891697 101983464 TCTCACGCTTGTCTATCCG 59 NA Rattus norvegicus 81 Akr1c1 ENSRNOG00000038331 ENSRNOT00000058367 1 1 1 80 17 69460241 69460259 CAGTGCGACTAAGTGATGG 58 69457694 69460200 CCTTACTCTTAGGTACCTCTCG 59 NA Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000035910 3 1 2 81 1 227455871 227455890 ACCTTGGTAAACCCATACCC 59 227454480 227455830 AGTTAATGAACAAAGCAGAGCC 60 NA Rattus norvegicus 81 Gng2 ENSRNOG00000048980 ENSRNOT00000071133 1 1 1 66 15 4850169 4850187 ACATGCCAAGGAAGATCCC 60 4850217 4850235 CTTCTTCTCCCGAAAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab5b ENSRNOG00000006130 ENSRNOT00000061878 1 1 1 80 7 3108403 3109802 CATGGTGGAGTATGAAGAGG 58 3108342 3108362 ATAGCAGTCTTAGCTGAAGTC 57 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191,ENSRNOT00000084075,ENSRNOT00000077175 2 3 3 80 7 141349513 141350276 GAGCAGAGGCTCATCTACC 59 141350318 141350338 GTAGGAGTCGAAGAAATCCGA 59 NA Rattus norvegicus 81 Slc22a3 ENSRNOG00000022946 ENSRNOT00000037369 2 1 1 80 1 48507703 48513655 TTTACCAGAAGGGATACCGT 58 48513697 48513716 ACAATTTCAAAGGCCATGGT 59 NA Rattus norvegicus 81 Slc22a3 ENSRNOG00000022946 ENSRNOT00000037369 3 1 1 80 1 48507703 48513656 TTTACCAGAAGGGATACCGTG 60 48513697 48513716 ACAATTTCAAAGGCCATGGT 59 NA Rattus norvegicus 81 Poli ENSRNOG00000012111 ENSRNOT00000016189 3 1 1 80 18 65757656 65757949 AGGAAATGCCTGGTATCGG 60 65757594 65757612 AGGTCTGGAGATCATGCAC 59 NA Rattus norvegicus 81 LOC100910990 ENSRNOG00000046990 ENSRNOT00000067490 1 1 1 80 3 152152976 152152994 TTTGCACCCATCATCAACC 59 152152354 152152933 CAGTACGAAGTATTGCGAGG 59 NA Rattus norvegicus 81 Hlx ENSRNOG00000002309 ENSRNOT00000003155 2 1 1 90 13 102642525 102642546 ACCTCAAATTTGGTATTGACCG 59 102641756 102642474 AGCAGCGATGTGAGATCTC 60 NA Rattus norvegicus 81 Stap2 ENSRNOG00000047306 ENSRNOT00000075121 1 1 1 80 9 11069358 11069379 ACCAGGATGAGAACTATGTGAC 60 11069418 11069686 TAATGGCCTTGAGATCATCCC 60 NA Rattus norvegicus 81 Mlycd ENSRNOG00000014522 ENSRNOT00000019923 3 1 1 83 19 52041284 52045426 ACAACATCCAGAGCATTGTG 59 52045472 52045490 TGGAGTAGAAGACAGCAGC 59 NA Rattus norvegicus 81 Rn60_X_0681.1 ENSRNOG00000051048 ENSRNOT00000075949 2 1 1 60 X 67212135 67212154 AATGGAACAATCAAGGCTGG 59 67212094 67212113 AGATGGTGATGGGTTTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp672 ENSRNOG00000002713 ENSRNOT00000003639 2 1 1 81 10 43757050 43757068 CACTGGCCTAGAAGAAGGT 59 43755316 43757005 TGCAACAACTTTGGCTGAG 59 NA InUTR Rattus norvegicus 81 Ccdc28a ENSRNOG00000053347 ENSRNOT00000085519 2 1 1 80 1 13390452 13390471 TTAGAAGAACTTCCGGAGGA 58 13386908 13390412 CAATTCTTCTAAGTCAGACAGC 57 NA Rattus norvegicus 81 Il19 ENSRNOG00000025571 ENSRNOT00000035044 1 1 1 80 13 47665901 47666782 CTCTGGAGCAATGTCAGGT 59 47665839 47665859 AGTTGTCATGGATTGTTCTGG 59 NA Rattus norvegicus 81 Thumpd1 ENSRNOG00000014946 ENSRNOT00000020077 3 1 1 81 1 189459586 189460602 AGAGTTGGCAGGAATAGTAGG 59 189459525 189459547 TTCTACTACCACCGTGTATTCTG 60 NA Rattus norvegicus 81 Syvn1 ENSRNOG00000020950 ENSRNOT00000028462 1 1 1 80 1 221411207 221411227 TTTGTGGCACTCTTTACACTC 59 221411268 221411379 GCGTTCCATAAAGTCCACAC 60 NA Rattus norvegicus 81 Malsu1 ENSRNOG00000009035 ENSRNOT00000011970 3 1 1 80 4 78736558 78736579 GTAATTGGTAGTGGGACTTCCA 60 78736617 78742435 GCACTTCAGGTGTTTATACGTC 60 NA Rattus norvegicus 81 Mphosph6 ENSRNOG00000050087 ENSRNOT00000072416 1 1 1 80 19 50357969 50358365 GGCAAGAAGATATGAGACTTTGG 60 50357911 50357931 TCTTCTTCGTAATTTGCTCGG 59 NA Rattus norvegicus 81 Dbf4 ENSRNOG00000050482 ENSRNOT00000072455 1 1 1 91 4 22905428 22906268 GTGAACCGGACTTACAAGC 59 22906322 22906341 ATATCAAACGGACTGCAAGG 58 NA Rattus norvegicus 81 Adra1b ENSRNOG00000060087 ENSRNOT00000087937 1 1 1 112 10 29449475 29449496 TTCCAACTCCAAGGAGCTG 60 29449375 29449393 GTTTGACAGCTATGGCACC 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000017757 ENSRNOT00000023948 1 1 1 84 9 82070930 82070948 TAAGCTCAGTGCCTCAGAC 59 82070998 82071122 TCCTTTAGAATGATGCTGGGA 59 NA Rattus norvegicus 81 Ggact ENSRNOG00000027040 ENSRNOT00000019158 3 1 1 82 15 109316924 109316943 CTTCCTGAAGGATCCATGTG 58 109308821 109308839 CCATACACGAAGATGTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gemin2 ENSRNOG00000004360 ENSRNOT00000006137 2 1 1 80 6 80109338 80109356 AGTGTCCAGATGTTGTGGT 59 80109397 80111692 ATCCCGAAAGAGAAACATTCAC 59 NA Rattus norvegicus 81 Ncbp2 ENSRNOG00000001746 ENSRNOT00000002381 1 1 1 80 11 72075652 72075672 AGAAGATCATCATGGGTCTGG 59 72073876 72075616 CATCTGCTCTTGAATAGTATTCCAC 60 NA Rattus norvegicus 81 LOC679683 ENSRNOG00000031585 ENSRNOT00000042949 3 1 1 60 3 117854012 117854032 GACAACAATCAGAAATGGCAC 59 117854054 117854072 CTGATGACCTGTTCCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562339 ENSRNOG00000001767 ENSRNOT00000002408 2 1 1 103 11 83048816 83093832 TGGTGTCACTGCAAATATGTG 59 83093896 83093915 ATTTGAATGGTGTTGGTGGG 59 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368,ENSRNOT00000080352 3 2 2 80 1 48557999 48558018 GAGAACAGCAAGACTTCCTC 58 48553832 48557960 CTTACACTCTGACAGATACACTC 58 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 2 2 2 80 14 91855031 91855051 GAAGAACATAAAGAGCGATGC 58 91855090 91858066 AGTTTCTTCCTTAATGACTGGG 58 NA Rattus norvegicus 81 Mcm7 ENSRNOG00000001349 ENSRNOT00000001825 1 1 1 80 12 19309653 19309899 GATAAGAGGAAACATCCACATCTG 59 19309596 19309616 AGACGGTCAATGTAAGACAGG 60 NA Rattus norvegicus 81 Romo1 ENSRNOG00000045555 ENSRNOT00000072464 3 1 1 83 3 152223023 152223042 GAAGATGGGCTTTGTCATGG 59 152223088 152224124 ATTCCGATCCTGAGACAGG 59 NA Rattus norvegicus 81 Hoxb9 ENSRNOG00000007573 ENSRNOT00000009951 3 1 1 100 10 84120369 84120387 AGGAAGCGAGGACAAAGAG 59 84123020 84123039 GGTATTTGGTGTAGGGACAG 58 NA DesignNoJunction Rattus norvegicus 81 Sohlh1 ENSRNOG00000033983 ENSRNOT00000051729 3 1 1 104 3 3292519 3293126 GTGAGTCAGAGTCCTCCAG 59 3292433 3292451 GTGATCCACCAGAAACAGC 59 NA Rattus norvegicus 81 Chmp4bl1 ENSRNOG00000034071 ENSRNOT00000052393 1 1 1 60 4 67060462 67060480 GCAGAACAGACTTCCACAG 59 67060503 67060522 CCTTGTCAAACTCTTCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp4bl1 ENSRNOG00000034071 ENSRNOT00000052393 2 1 1 60 4 67060467 67060487 ACAGACTTCCACAGCTATCTC 59 67060505 67060527 CTCATCCTTGTCAAACTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem37 ENSRNOG00000047714 ENSRNOT00000074471 2 1 1 290 13 36101318 36101336 TCGAGGAATCTGCATCCAG 59 36095444 36095462 TCAAAGAAAGACCGGTGAG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 3 3 3 80 15 24161530 24164290 ACGCAAACAGTATCACTCTG 58 24164332 24164351 TGTTGTTCTCATTGAAGCGG 59 NA Rattus norvegicus 81 Slc38a8 ENSRNOG00000025503 ENSRNOT00000038580 1 1 1 80 19 52133181 52134939 CAGGAGTACACCAGCATCC 60 52133119 52133138 GGGCCATAAGTAGTACTGCA 59 NA Rattus norvegicus 81 Slc38a8 ENSRNOG00000025503 ENSRNOT00000038580 3 1 1 81 19 52126805 52131228 GGATTCCAGTGTCATGAGG 58 52126742 52126760 CAGAAACCAAGGTCCAGTG 58 NA Rattus norvegicus 81 Tfpi2 ENSRNOG00000010513 ENSRNOT00000013989 1 1 1 80 4 28952678 28952696 CCTGAGACTGTGGAATCTG 57 28952394 28952634 AAGTTATTCCCTTGGGCAG 57 NA Rattus norvegicus 81 Zfp775 ENSRNOG00000008362 ENSRNOT00000011041 3 1 1 125 4 78240432 78248398 CAAAGTCAAAGGTGGCAGG 59 78254831 78254849 GCTTCTCCTGCTTGATCCT 60 NA InUTR Rattus norvegicus 81 Lamp2 ENSRNOG00000000164 ENSRNOT00000000177 1 1 1 80 X 124743561 124743582 CATTTCTAATGGCAATGCTACC 58 124742702 124743520 ATGAAAGGCACCTTCTCCT 59 NA Rattus norvegicus 81 Pbx4 ENSRNOG00000010736 ENSRNOT00000014265 1 1 1 82 16 21308879 21308897 ATCTGAGCAACCCTTACCC 59 21306161 21308834 GTTAGAGACCTGGGACACTG 60 NA Rattus norvegicus 81 Spaca1 ENSRNOG00000008232 ENSRNOT00000010909 3 1 1 80 5 49429159 49430185 AAAGCCAGATCAACAACCTG 59 49429098 49429119 AAAGCCATAGGATGAAGTTCTC 58 NA Rattus norvegicus 81 Ncbp2 ENSRNOG00000048589 ENSRNOT00000071483 3 1 1 81 11 72923732 72923752 AGAAGATCATCATGGGTCTGG 59 72921955 72923694 GCATCTGCTCTTGAATAGTATTCC 60 NA Rattus norvegicus 81 LOC100365887 ENSRNOG00000047639 ENSRNOT00000072741 1 1 1 60 3 76256106 76256125 TGCCAATGGAAAGAAATGTG 57 76256065 76256085 TAGTCTGTGAAGCTCAATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shroom3 ENSRNOG00000002208 ENSRNOT00000003001 3 1 1 84 14 16623941 16625553 GAAGAAAGGAGTTCTCTGAATGAG 59 16623880 16623898 GGTCCAGGTTCTCCTTGAG 59 NA Rattus norvegicus 81 Gadd45a ENSRNOG00000005615 ENSRNOT00000007698 2 1 1 89 4 97784145 97784163 ACTGGAGAACGACAAGAGC 60 97783177 97784093 GATGAATGTGGGTTCGTCAC 59 NA Rattus norvegicus 81 Dnajb11 ENSRNOG00000001803 ENSRNOT00000002462 3 1 1 80 11 81743067 81743085 ATGTGACTGTCTCACTGGT 58 81742741 81743024 AAATGTGTACCTTGTGACCA 57 NA Rattus norvegicus 81 Hspb2 ENSRNOG00000010402 ENSRNOT00000013960 1 1 1 65 8 55177752 55177770 GAATTTGCCAACCCTAGCC 59 55177282 55177300 GATCTCTTCTGGCAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000015511 3 1 2 81 15 24090880 24090901 CTGAATAATCCTTACCAAGTGC 57 24090941 24100139 CACCTTAATGGTAAGAGTGGG 58 NA InUTR Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 1 2 2 80 7 97802921 97802939 AAGTACCAATTGCCAGGTC 58 97802983 97806062 CAAGATTCGGCCATCTCTG 58 NA Rattus norvegicus 81 LOC502660 ENSRNOG00000031514 ENSRNOT00000050168 2 1 1 60 3 103557302 103557323 CTTTCTTCATCCTGATTGTGTC 58 103557342 103557362 GAGGAGTGTTTATGAACCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irx4 ENSRNOG00000012720 ENSRNOT00000016975 3 1 1 82 1 32636900 32637691 AGTACCCTTATGACAGGTACG 59 32636838 32636856 CTTAAGTGTGCTGGTGGTC 59 NA Rattus norvegicus 81 Slc2a7 ENSRNOG00000036951 ENSRNOT00000055520 1 1 1 84 5 167206193 167207740 CACTCCTCCTTCAGAGCAC 60 167207788 167207806 CCTATGGAATGTCCCACGA 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031,ENSRNOT00000010367 3 2 2 80 X 127564107 127636121 ACTAATGCTTTCTGCTCCCA 60 127636162 127636182 CAGGGTGTTCATTGACATCTG 59 NA Rattus norvegicus 81 Mir295-2 ENSRNOG00000046317 ENSRNOT00000062160 1 1 1 60 1 66133369 66133389 TTTGGTGAGACTCAAATGTGG 59 66133329 66133350 AAAGTAGTAGCACTTTCTACGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm3 ENSRNOG00000016770 ENSRNOT00000022603 3 1 1 82 1 78844902 78845058 TTGACAAGGATGGGAATGG 57 78844838 78844856 CTCATCAGTCAGCTTCTCC 57 NA Rattus norvegicus 81 Vom1r3 ENSRNOG00000048251 ENSRNOT00000045789 1 1 1 60 1 86429301 86429320 CTTCAGAGTACAGTTGGGAG 57 86429342 86429361 AATTGATCAGGTAGCAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phlpp2 ENSRNOG00000016108 ENSRNOT00000021744 3 1 1 80 19 41758127 41758146 GGAAACCGTTTGGAAATCCT 59 41756924 41758086 GTGGTTCATCCTTAGATCCAC 58 NA Rattus norvegicus 81 Elovl3 ENSRNOG00000019124 ENSRNOT00000025938 1 1 1 93 1 265885642 265885876 TGGTTGAACTCGGAGACAC 60 265885931 265885951 GTAAACAGTAGCACTGTGCTG 60 NA Rattus norvegicus 81 AC131537.1 ENSRNOG00000045985 ENSRNOT00000071823 3 1 1 136 10 109774005 109774382 GAAGTTGTTTCGGTCTGCTG 60 109774559 109774577 CATTAAGCTGAACCGGAGC 59 NA Rattus norvegicus 81 Snx10 ENSRNOG00000011944 ENSRNOT00000016265 1 1 1 80 4 81364528 81364546 TCTTGCGTACGAAGAAGGT 59 81364588 81364976 TGGTAATTGTACCAGCAATGC 59 NA Rattus norvegicus 81 Slc45a1 ENSRNOG00000018229 ENSRNOT00000024581 1 1 1 80 5 167687928 167687947 TCCAGTACTCCTGCAAATGG 60 167687326 167687885 AGCAAGAATCCGAGGATGG 60 NA Rattus norvegicus 81 Wwp1 ENSRNOG00000006328 ENSRNOT00000009047 3 1 1 80 5 33636822 33636842 TGTCAGGTACTTTGTTGACCA 60 33635621 33636783 CCTTTAGTTACCGATGACTTCC 59 NA Rattus norvegicus 81 Bpifb1 ENSRNOG00000015468 ENSRNOT00000055342 1 1 1 80 3 149695646 149696594 TTCAATAACGTCAGTATCGAGC 59 149698874 149698893 AGTGTCCTTCAGGACTTCAG 59 NA Rattus norvegicus 81 Zranb2 ENSRNOG00000009990 ENSRNOT00000055259 3 1 1 80 2 263870775 263870798 TCGAAGATAAAGAATCAGAGGGAG 60 263870836 263871293 CATCCTCGTCCTCATCTAGC 60 NA Rattus norvegicus 81 Bicd1 ENSRNOG00000036911 ENSRNOT00000055435 3 1 1 80 4 184019655 184019675 CTCAAGCAACAGTATGACGAG 59 184019717 184091141 CCCAAATGCCTCTTTGAGC 60 NA Rattus norvegicus 81 Peo1 ENSRNOG00000014935 ENSRNOT00000031018 3 1 1 81 1 264759803 264760211 AGCATCAGGTCTGTCATAGAC 59 264760254 264760272 ACTGCAAGTTGTCGATGAC 59 NA Rattus norvegicus 81 Styx ENSRNOG00000007956 ENSRNOT00000010612 3 1 1 80 15 19711618 19714453 CCAACTTCAGGAATATGAAGC 57 19714492 19714513 AAAGACCTTTCTATCTGGAGTG 58 NA Rattus norvegicus 81 Dlg5 ENSRNOG00000005783 ENSRNOT00000007828 2 1 1 80 15 214978 215906 TGATTCTTGAGTATGGCAACC 58 215944 215966 TATCCTTAGGCTTCATCATCTCC 59 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 2 1 1 95 3 9656851 9658963 GATCCAGTGGGTGATAGGC 60 9659021 9659040 ATGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Zdhhc11 ENSRNOG00000039743 ENSRNOT00000060971 2 1 1 80 1 31934951 31934969 CCTTTGGGATCTTCATCCC 58 31926336 31934909 CACCCATCACTAGTACAAAGG 58 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484,ENSRNOT00000060311 1 2 2 80 3 94653570 94653589 TCTGATGAAGCCTTACAGGA 58 94647666 94653527 AGGAGGACTAGAGTGAGGT 58 NA Rattus norvegicus 81 Ccng2 ENSRNOG00000002089 ENSRNOT00000002876 3 1 1 80 14 16270343 16270362 ACAGCTACTACAGTGTTCCC 59 16268936 16270300 CACCAGAGTCCTCACTCTC 59 NA Rattus norvegicus 81 Mum1l1 ENSRNOG00000030475 ENSRNOT00000041044 3 1 1 81 X 110404287 110406627 GCTTCAAGAGGTGTCTTGAG 59 110406671 110406689 ACAGGTCTTTCACCCTGTG 60 NA InUTR Rattus norvegicus 81 Pcyt2 ENSRNOG00000036684 ENSRNOT00000054952 3 1 1 80 10 109789914 109789932 ACAAGGGCAAGAACTACCC 60 109789663 109789871 CCACTTCTGAAACATACCGG 59 NA Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000079905 3 1 2 80 5 159739074 159739602 CATGAGACCACTGGTATTCAG 58 159739644 159739662 ACGGAACATAACAACACGG 59 NA Rattus norvegicus 81 Sry ENSRNOG00000051574 ENSRNOT00000084732 3 1 1 60 Y 327204 327223 ATGCATTTATGGTGTGGTCC 59 327246 327264 ATGCTGGGATTCTGTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aida ENSRNOG00000058805 ENSRNOT00000089309 3 1 1 80 13 101718181 101718202 CAGAATCGAGAAGATTGGTCTG 59 101718241 101719795 CCATTCAAATCTTTCACGCTG 59 NA Rattus norvegicus 81 Mmp11 ENSRNOG00000028344 ENSRNOT00000031400 1 1 1 80 20 13674822 13674930 TGACTTCACCAGGTACTGG 59 13674974 13674992 TTAGGGAAGAAGGCATGGG 59 NA Rattus norvegicus 81 Tdo2 ENSRNOG00000011612 ENSRNOT00000015732 3 1 1 84 2 180914571 180914590 CAATGAAGAAGACGGAGCTC 59 180913613 180914526 CTTCTCCAACTGCAAGTAGTC 59 NA Rattus norvegicus 81 Tbkbp1 ENSRNOG00000009370 ENSRNOT00000012462 3 1 1 81 10 85083713 85083731 AATCAAGGATGGCTCCCTG 60 85083440 85083668 CTTCTGCAACTCGTGTTGG 60 NA Rattus norvegicus 81 Megf9 ENSRNOG00000005932 ENSRNOT00000007812 2 1 1 80 5 86590561 86609252 CACCATAGAATTTGGTGCGT 59 86590500 86590520 TCACATGTATTGCAGTTCTGG 59 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 1 1 1 60 4 180291607 180315485 GATCATTGTCTGCGTGGTG 59 180315506 180315527 AACTTGGTATGAGACACAAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 1 3 3 80 20 3296487 3296506 CTCCACATTGTCCTGTTCAC 59 3296132 3296445 CCGACTCTTCTTCAAGACAC 58 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 3 3 3 95 20 3296511 3296529 ATTTCCACCAGCACTACCC 60 3296140 3296453 TCTTCAAGACACTACCAGGC 60 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203,ENSRNOT00000025217 3 2 2 80 18 70970774 70971076 ACTTTAAGAACACCCGGGA 59 70971117 70971138 TGACATCCTTCAGATACTTGGT 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 2 2 2 80 11 74764621 74764639 AATGATTGCTCAAGCACGA 58 74760686 74764578 TCACTGAGAGTCACCTTCAC 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 1 3 8 80 4 8194328 8194475 AATCAAGAGGGATATGACCGA 59 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 2 4 8 86 4 8223894 8223913 CAACATATTGACTGCATGGG 57 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076642,ENSRNOT00000084050,ENSRNOT00000068276 1 3 8 92 4 8212567 8214525 AGGGTTAAGGGTTCAGCAC 60 8212493 8212511 GTAGCGATCCATCCATGCT 60 NA Rattus norvegicus 81 Rpl18a ENSRNOG00000018795 ENSRNOT00000025421 1 1 1 80 16 20294462 20294480 CTGGTACTTTGTGTCGCAG 59 20294524 20294633 GACTTCTCAAACACCTGCC 59 NA Rattus norvegicus 81 Zbtb24 ENSRNOG00000000308 ENSRNOT00000057175 2 1 1 82 20 46179085 46179104 TTACCTGTGATCAGTGTGGA 58 46179149 46179944 TAGTGAGTGGCCTGTATGG 59 NA Rattus norvegicus 81 LOC102557302 ENSRNOG00000047845 ENSRNOT00000040545 3 1 1 94 19 29133721 29134758 GAATGTTCAACGCTGGGAG 59 29133645 29133665 CAGCTCTTTAATCAGCCTCTC 59 NA Rattus norvegicus 81 Zfp143 ENSRNOG00000010087 ENSRNOT00000013733 1 1 1 80 1 174731250 174731268 AGTAGCCACAGTAACCCAG 59 174731309 174734080 GATATGTTGACGTGTTGAGTCC 60 NA Rattus norvegicus 81 LOC100909740 ENSRNOG00000047484 ENSRNOT00000072302 2 1 1 102 4 82193194 82194361 CATCGATCCCAATAACCCG 58 82193110 82193128 TTCTTTCTCCAGTTCCAGC 57 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530,ENSRNOT00000027677 3 2 2 80 1 82100886 82100995 GTGGAGATCATCAAGGTACTAGG 60 82100828 82100852 GAACTTGAATTCTGTGTAGTTAGGG 60 NA Rattus norvegicus 81 AABR07032657.1 ENSRNOG00000049921 ENSRNOT00000074465 3 1 1 80 18 76317242 76317296 GACGTCATAAAGCGACGAC 59 76317339 76317358 CCTCTGGCATGTTTCATAGC 59 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000015778 2 1 2 165 15 24267405 24267423 GCCAAACAAATGGGTTTCG 59 24267552 24332207 GCATAACAGATGCCCTGTG 59 NA InUTR Rattus norvegicus 81 Slc7a5 ENSRNOG00000018824 ENSRNOT00000025784 1 1 1 80 19 54696587 54697767 CCATCAAGGTGAATCTGGC 59 54696525 54696543 GTGTCTTCCAGAAGGACAC 58 NA Rattus norvegicus 81 Ube2d4 ENSRNOG00000034016 ENSRNOT00000049772 3 1 1 60 14 2934055 2934075 GTCCATCAGTTCTCTGTTGTG 59 2934015 2934034 AGCAATCTCAGGCACTAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgap3 ENSRNOG00000046143 ENSRNOT00000075076 1 1 1 80 10 86344938 86344956 ACACATCTCCTACCTGAGC 59 86344782 86344895 AGATTCACCAGGCCTATAGC 59 NA Rattus norvegicus 81 Dcaf5 ENSRNOG00000004556 ENSRNOT00000006005 3 1 1 80 6 103520982 103527584 GAGAAGATTATCAAGATCTGGAGC 59 103520925 103520945 GGAATCATCTTCAATCCGACC 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415,ENSRNOT00000092086 1 4 4 80 1 154446195 154447374 GCATGATAGGATATGGAATTCCTC 59 154447411 154447431 CAGGCTGGCTGTATATTAAGG 58 NA Rattus norvegicus 81 Olr1411 ENSRNOG00000032495 ENSRNOT00000049730 2 1 1 84 10 36554929 36554948 TCCTCGATTCCAGAGATCTC 58 36554993 36567791 GTTGATTGACTCGAGTGTCTG 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000009813,ENSRNOT00000091155 3 2 4 80 2 182032240 182034920 ACTCCGATAAAGTGGACCTC 59 182032179 182032197 GTCTTAGGCTAGGAGGCTC 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000021562 1 1 3 80 3 113438197 113438217 GAGTATGAGGAGTACACAGAC 57 113435693 113438155 CACACGATCCTTCTTTCGA 58 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000021562 3 1 3 80 3 113435700 113438165 CTGTCTTCATTCGAAAGAAGGA 59 113435641 113435659 CCTGCTCCAATTCCTTCTG 58 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 2 2 2 80 7 123262395 123264949 AGCATCCAGTGTATCCAGAG 59 123264992 123265010 ACCATAGAACACCACTGCC 60 NA Rattus norvegicus 81 Polr3a ENSRNOG00000010008 ENSRNOT00000013501 3 1 1 80 16 736685 738154 TCCTGTCTACCTGTCTAACC 58 736624 736642 TACTTGGCTTTCAGCAGTC 58 NA Rattus norvegicus 81 LOC103689945 ENSRNOG00000056617 ENSRNOT00000081997 1 1 1 80 15 4017652 4017795 CTCCCTCAGCAGATTCTCC 59 4017590 4017611 TACTGTATTGATGGCTGTTGAC 59 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 2 2 2 80 13 102842706 102842727 GTCTTTGATTACTTAGTTGCCC 58 102836773 102842666 TACAGCAGATACAATCTGCC 58 NA Rattus norvegicus 81 Trdmt1 ENSRNOG00000026132 ENSRNOT00000038651 2 1 1 80 17 80832027 80832046 TGTCAATGCTTAAACTGCGA 59 80827137 80831985 CAGGAAACCCAAATTCTGGA 58 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332,ENSRNOT00000001437 3 2 2 80 12 13142353 13146369 CCTACTTCTCTGACACAGAC 57 13142292 13142310 TGATCTTGTCCTGTTGCTG 58 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360 1 1 4 191 X 70460819 70460838 GTAGCAGGGTTATGAAGCTC 58 70459692 70460237 GTCTGGAATCACCTTGGAG 58 NA InUTR Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927 1 1 2 98 4 150485701 150487920 TCACCCAGAAAGGAAATGGA 59 150485622 150485640 GTGTTCTTGTTGGTGAGCA 59 NA InUTR Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927,ENSRNOT00000008763 3 2 2 60 4 150485053 150485071 AGTCCGTATGAGCGAAGTG 60 150485011 150485032 GAACAATGAAAGCTGAATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs11 ENSRNOG00000027891 ENSRNOT00000030841 1 1 1 80 10 72145022 72145041 CACAGTTTGCCTTCAAACTC 58 72144769 72144982 CTGGTCTGAGACACTTTATGTG 59 NA Rattus norvegicus 81 Ipmk ENSRNOG00000000609 ENSRNOT00000000748 1 1 1 80 20 18462005 18465912 CTCTGAAGGAGGGTGTCTC 59 18461943 18461961 CCTTCTGAATACTGGCTGC 58 NA Rattus norvegicus 81 Ppid-ps1 ENSRNOG00000055834 ENSRNOT00000089469 3 1 1 60 20 2443537 2443555 AGAAGGCACAGGAGATAGC 59 2443495 2443515 TTGACTTTAAGCAGTTCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 1 2 2 84 1 73251864 73251887 GGATGTTATCAGTGTCAGTATAGG 58 73234284 73251821 CATACAAGCCTGTCACCAC 59 NA Rattus norvegicus 81 Zbtb37 ENSRNOG00000026907 ENSRNOT00000039082 3 1 1 80 13 78837739 78847145 TTAGCTCCCAGGTAGAAGAG 58 78837678 78837699 GTTCAGATACTTCTTGTTCTCG 57 NA Rattus norvegicus 81 Cox5b ENSRNOG00000016660 ENSRNOT00000022487 1 1 1 80 9 43260355 43260373 CCTACTGATGAGGAGCAGG 59 43260414 43260597 CATATTGTATGGATCCAGTCCC 58 NA Rattus norvegicus 81 LOC100362142 ENSRNOG00000025580 ENSRNOT00000035048 3 1 1 81 3 164345240 164346228 AGTTCCAATGGAGTGGTGG 60 164345177 164345196 GCAGGATGACTTTGATGCTG 60 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 1 2 2 80 13 101013045 101013977 GCTCCATTGATGTCTCAACTG 59 101014017 101014037 TAACAGAGTATGCATGACCCT 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 3 5 5 82 8 73120149 73121286 CAGAGATTAGCCCAGGTGG 60 73120085 73120103 TCCACATCCTTCTGACCAG 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 2 2 3 81 13 78928338 78928356 TTAGTCCCAAGTTCCTGGT 58 78925973 78928294 TCATCTACCAAGTCTCTGCA 58 NA Rattus norvegicus 81 Slc25a14 ENSRNOG00000006871 ENSRNOT00000009637 1 1 1 80 X 135499656 135500796 CACTTTGTTTCCAGCTTTACC 58 135500837 135500856 CATCATTCGAGTTCTCACCA 58 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 2 2 2 82 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117908 164117927 GACAATGGCATTACCACTCC 59 NA Rattus norvegicus 81 Olr592 ENSRNOG00000049572 ENSRNOT00000075834 3 1 1 60 3 75970633 75970652 TAATGCAATTTGTCCTGCTG 57 75970674 75970693 GCAGACAGAATTCCTTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000030102,ENSRNOT00000077117 2 2 2 80 16 2707303 2713498 AGATATGACAACTGTACCACCT 59 2713537 2713557 CTGGCTAATGGTGATGTTCTG 59 NA Rattus norvegicus 81 Ndufa6 ENSRNOG00000008569 ENSRNOT00000011484 3 1 1 81 7 123583286 123583918 TCATTAAGGGAAAGATGGAGCT 59 123583226 123583244 GTTTCATGGAAGAACCGCA 59 NA Rattus norvegicus 81 Olr1501 ENSRNOG00000031966 ENSRNOT00000041085 2 1 1 60 10 60728922 60728943 ATTATTGGCCTCTACTTGTGTC 58 60728962 60728982 ACATGACAGTATCCTTCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grem2 ENSRNOG00000003616 ENSRNOT00000004803 1 1 1 83 13 92897894 92987901 TCATTGCAGGATGTTCTGGA 60 92897830 92897848 CTGTTCTTCCGTGTTTCGG 59 NA InUTR Rattus norvegicus 81 Tceal8 ENSRNOG00000028585 ENSRNOT00000017138 3 1 1 191 X 106714938 106715381 CCTGCTACTTCCAGGACTC 59 106714169 106714188 TGGATCTTCTGAAGGATGGC 60 NA InUTR Rattus norvegicus 81 Slc47a2 ENSRNOG00000038055 ENSRNOT00000057907 3 1 1 80 10 47590370 47593567 AAACTTGGGATAATAGGCCTC 58 47590310 47590333 CAGGATGTAGATTAGATAGGAGAG 57 NA Rattus norvegicus 81 Olr1516 ENSRNOG00000048690 ENSRNOT00000073002 3 1 1 60 10 61072027 61072049 GTTCTTTGGGACAGTAATAAGGG 59 61072067 61072087 CACTGAGTTAGAGGAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf6 ENSRNOG00000002866 ENSRNOT00000003836 3 1 1 80 14 19008426 19010485 TGTATGGACAGACCGAAGAC 59 19010528 19010546 GCTGTATGGGTCGTTTGAC 59 NA Rattus norvegicus 81 Olr1237 ENSRNOG00000047869 ENSRNOT00000075043 2 1 1 60 4 1497619 1497639 ATCAGTTCATCTAAGGGCAGG 60 1497660 1497679 CAACAATGATGTGGGAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mef2bnb ENSRNOG00000020427 ENSRNOT00000064090 1 1 1 89 16 21026974 21026992 CTTGCCAATGAGCCATCAG 59 21026423 21026921 CATATCAGCCTTGTGCTGG 59 NA Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000050927,ENSRNOT00000002376 2 2 2 80 11 83890341 83890600 TGTCTTTGTCATTGGAGCAG 59 83890643 83890661 TCCGTGTGAATCCCATCTG 60 NA Rattus norvegicus 81 Olr569 ENSRNOG00000059247 ENSRNOT00000079367 1 1 1 60 3 75582665 75582685 ATGGCCTTTGATAGATACCAG 57 75582704 75582725 TGGACATGTTTACTGTGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 2 2 2 81 16 2365906 2365924 GAAACTGGCTTTGAACCCG 60 2364341 2365866 GGTAGACTGAAGAACTGAAATCTG 59 NA Rattus norvegicus 81 Itgb1bp2 ENSRNOG00000003596 ENSRNOT00000004888 2 1 1 80 X 71345551 71345573 CCACTTCTTATATCTCAAGCCCT 60 71345613 71345738 ATTGTCAAGTCCTGCTCCA 59 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000017663 3 1 2 113 15 2739344 2741973 CTAAAGAGGATGGACTCGCT 59 2742049 2742067 CAGCAATCGCTGTAGTGAG 59 NA Rattus norvegicus 81 Olr1385 ENSRNOG00000046800 ENSRNOT00000072557 1 1 1 60 10 34360351 34360370 CCTTACTCCTATGCTCAACC 58 34360310 34360328 TGCTCCTATCACATCACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 2 2 2 80 8 105362575 105406302 GCTGGACCAGATTTGTGAC 59 105362513 105362532 CCATCCATGTACAAGGTGAC 58 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 3 2 2 82 9 74047919 74047938 CCTTTCCGAATCCTTATGCC 59 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Smyd1 ENSRNOG00000006776 ENSRNOT00000009184 2 1 1 80 4 99077825 99077844 AGAAGTCCTCTCCTACCTCC 60 99076322 99077785 TAGAGTTTCATGTAGCCATCCA 59 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 2 2 2 92 17 76008864 76008884 CAAGGCCGTTATCACACTG 59 76016102 76016121 ATTGACCATGGCAATGATGG 59 NA Rattus norvegicus 81 Mt1m ENSRNOG00000028841 ENSRNOT00000047663 1 1 1 93 20 3677603 3677621 AATGCAAATGCACCTCCTG 59 3677678 3677696 GAAGCCTCTTTGCAGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr318 ENSRNOG00000049602 ENSRNOT00000029224 1 1 1 60 1 228225503 228225523 GTTTACACCTTCATCACTCCT 58 228225463 228225482 GTTCTCTGTTCCTCATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 2 2 2 80 20 13123584 13123603 AGGAGTGAAGGTCATCATCG 59 13123646 13125463 CTGCTCACCCAGATCTCAC 60 NA Rattus norvegicus 81 Olr556 ENSRNOG00000043492 ENSRNOT00000066249 2 1 1 60 3 75323314 75323333 TTCCAGTAGAAATTGGGCAG 58 75323355 75323374 CTGTTAGAAGCACAGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450,ENSRNOT00000028780 3 2 2 80 2 198432383 198434427 CGTGAAAGAGCTATTTGCCA 59 198432322 198432340 TTCAGGATGACCAGACTCC 58 NA Rattus norvegicus 81 Slk ENSRNOG00000011339 ENSRNOT00000015495 2 1 1 80 1 267396945 267396963 AAAGGAGAGCAGGAGAAGG 59 267397004 267405695 CTGAACAAATTCTTGTTCCTCC 58 NA Rattus norvegicus 81 Rbp2 ENSRNOG00000013932 ENSRNOT00000018755 2 1 1 80 8 106516044 106516064 TGACCTAGATTTCACAGTGGG 60 106516106 106525957 GTGACTAGGGTCTTGACGT 59 NA Rattus norvegicus 81 RGD1311224 ENSRNOG00000009399 ENSRNOT00000012568 3 1 1 80 3 72862348 72862368 GCTATTTCATCACATTTGGCC 58 72860784 72862308 GGCTCTCAATAAACTTGACCA 58 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657,ENSRNOT00000039273 3 2 2 83 19 55206968 55206986 AAAGAACCCACAGAAGCTG 58 55207032 55210205 GTCGTCATCATCTATCTCCC 57 NA Rattus norvegicus 81 Myoc ENSRNOG00000003221 ENSRNOT00000004386 2 1 1 80 13 80525253 80525271 AACAGAGGTTCCTGCTTCC 60 80525314 80526685 ACTCCACATCCTTTGTCTCC 60 NA Rattus norvegicus 81 LOC100909653 ENSRNOG00000045602 ENSRNOT00000073965 2 1 1 60 3 103264314 103264333 CACATCTCTGTTGTGGTCCT 60 103264273 103264291 GCGAAGGCCATGTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec14l1 ENSRNOG00000002722 ENSRNOT00000003690 1 1 1 80 10 106104843 106105127 TCTGGACTCTGGTTAGTCCT 59 106105169 106105188 GGCCCTGGTAATCATTTCCT 60 NA Rattus norvegicus 81 Traf5 ENSRNOG00000047957 ENSRNOT00000071698 3 1 1 81 13 110770638 110771690 CTAACCTGCAGGATCATGAG 58 110770576 110770594 CTCGGAATAGTCTGCACAC 58 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000087346,ENSRNOT00000012340 2 2 2 80 10 86677013 86677031 CAAGATCACCCGGAATCAG 58 86677075 86677837 TCTAGAACCAGGTCCATGG 58 NA Rattus norvegicus 81 Olr1583 ENSRNOG00000045582 ENSRNOT00000044784 1 1 1 60 13 91725853 91725873 ACTTCTTCTGTGATGTGAGAC 58 91725894 91725913 TCATTGATAGTGGTGTCGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457,ENSRNOT00000066268 2 2 2 80 5 147261524 147261961 GGGAGGAAGATTCACAGCA 59 147262004 147262023 GGTCACTCCTCCTGTAATGG 60 NA Rattus norvegicus 81 Hsd11b2 ENSRNOG00000017084 ENSRNOT00000023130 2 1 1 84 19 37480164 37480182 ACATTCAGCTGTGAACTGC 59 37480229 37480405 CATTAGTCACTGCCTCTGTC 58 NA Rattus norvegicus 81 Usp26 ENSRNOG00000029106 ENSRNOT00000047605 1 1 1 97 X 139068904 139068922 AAAGGTTGTTCTCCCTTGG 58 139034220 139068846 GTTTGTTTCCTAAGTTCACCAG 58 NA InUTR Rattus norvegicus 81 Fabp7 ENSRNOG00000000814 ENSRNOT00000001079 1 1 1 80 20 40770318 40770337 ACACAGAGATCAGTTTCCAG 57 40770379 40771054 ACCGAATCACAGACTTACAG 57 NA Rattus norvegicus 81 Pdcd7 ENSRNOG00000014340 ENSRNOT00000019258 1 1 1 93 8 70872329 70872594 GGATCCAGATGAGTTCCCA 59 70872651 70872669 TATTTGAATGAGCGCAGGC 59 NA Rattus norvegicus 81 Olr659 ENSRNOG00000048520 ENSRNOT00000047910 1 1 1 60 3 77415092 77415112 ATCTATGTCTTCTCTGTGGTG 57 77415133 77415152 GTTGGCTGTTTGTAATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgmn ENSRNOG00000007089 ENSRNOT00000010101 1 1 1 80 6 126295341 126308050 TAATTACCGACACCAGGCAG 60 126295280 126295299 ACTATGATCTGCTCGTCAGG 59 NA Rattus norvegicus 81 Chmp5 ENSRNOG00000008672 ENSRNOT00000011907 1 1 1 80 5 57271250 57271270 CAACAGTCCTTTAACATGGAG 57 57271312 57271917 TTTCATTGCATCAACCGTG 57 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799,ENSRNOT00000003494 2 2 2 80 X 71480352 71480371 TGAAGAAAGCATGATGTCCT 57 71480413 71484682 CTCCCATAACTGATGTTGCT 58 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 3 3 3 92 13 83073935 83085477 ATGGAATGGTACCAGAAGTG 57 83085532 83085550 AAATTGCCACTCTCGATCC 58 NA Rattus norvegicus 81 Olfml1 ENSRNOG00000056562 ENSRNOT00000081351 3 1 1 90 1 171797727 171797745 GGAGGAGAAGACATCAGCT 59 171797799 171815887 CATGTTGTCACAGCTTGTG 58 NA Rattus norvegicus 81 Cox4i1 ENSRNOG00000017817 ENSRNOT00000024033 3 1 1 80 19 54250551 54250963 GATGAGAAAGTCCAATTGTACC 57 54251004 54251022 TGTCTTCCACTCATTGGTG 57 NA Rattus norvegicus 81 Olr583 ENSRNOG00000049657 ENSRNOT00000042996 1 1 1 60 3 75849077 75849098 AATGTACTTCTTTCTCAGCCAC 59 75849116 75849137 TCCAACAGCAGTTGAATAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc37 ENSRNOG00000017959 ENSRNOT00000024222 3 1 1 80 4 122323233 122323256 GAATTGAAGAGCATCTTAGTAGGG 59 122322673 122322767 GCTGTGAACCTCTTTCCAC 59 NA Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000076244 2 1 2 95 12 22452858 22452967 GTTCAAGTGAAGGTCGTGG 59 22453026 22453044 TATGAACTCCAGCAGCTCC 59 NA Rattus norvegicus 81 Olr239 ENSRNOG00000030863 ENSRNOT00000051241 2 1 1 60 1 172075729 172075747 GCTACTCCACTCTCATGTC 57 172075687 172075706 CCCGCATAGGAAATAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 2 2 2 80 1 257929210 257929228 TTGTTTGTGGCCCTTTGTC 59 257929269 257930439 ACAGCAAAGTAGGAATTTCTGG 59 NA Rattus norvegicus 81 Zfpl1 ENSRNOG00000050180 ENSRNOT00000075165 1 1 1 80 1 221446117 221446246 TCCCTCTGATCGATGAGGT 60 221446055 221446075 CATTAAAGCTGGACCAGTCAG 59 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005,ENSRNOT00000068764,ENSRNOT00000079651 1 3 3 80 19 53495931 53495949 CTGATGGAGAGGAAGTCGG 59 53494669 53495889 CTTCACAATCTGGATATGGCC 59 NA Rattus norvegicus 81 Psmg2 ENSRNOG00000017729 ENSRNOT00000024126 2 1 1 80 18 63398718 63398736 AATGGTTGGGAACAATCCA 57 63398778 63400349 GGTAAGGAATACACTTCAGCA 58 NA Rattus norvegicus 81 Golga5 ENSRNOG00000007699 ENSRNOT00000010385 1 1 1 80 6 126353732 126353750 GTCACCACCAGTGTAACCA 60 126353790 126355976 AGAATCAGAGCTACTCACTTCAG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 2 2 2 80 1 220929919 220931397 AAGATGAAGGTGACCTTGGG 60 220929858 220929878 CTGGTAGGTGAAGGACTTCTG 60 NA Rattus norvegicus 81 C5ar1 ENSRNOG00000047800 ENSRNOT00000073034 2 1 1 63 1 78195120 78195138 ATCGTTGGTCACCACAGAG 60 78188472 78188491 ACTGCTGTCGTTACTTATGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr539 ENSRNOG00000009969 ENSRNOT00000013215 1 1 1 60 3 74631751 74631769 TTGGTGGGAAATCTGGGAC 60 74631709 74631728 TAGGTGTATGGAGTTTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl27-l1 ENSRNOG00000031517 ENSRNOT00000047308 1 1 1 60 X 68955151 68955169 GATGTGTTCAGAGACCCAG 58 68955109 68955127 CAAACTTGACCTTGGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx9 ENSRNOG00000046874 ENSRNOT00000075268 2 1 1 80 1 46791991 46792805 CTCCCTAGGGTTCCAAGAC 59 46793766 46793784 ACACTTGCATACACAGCTG 59 NA Rattus norvegicus 81 Zfp709l1 ENSRNOG00000048910 ENSRNOT00000047433 3 1 1 93 7 10430923 10430941 GCTTTGCTGGATCCTTTCC 59 10420351 10430872 GGTCTTCCAATTTGTATCCTATAGC 60 NA Rattus norvegicus 81 Zscan21 ENSRNOG00000039234 ENSRNOT00000001810 1 1 1 82 12 19268714 19269439 GACTGCAGGTCTCATCTCC 60 19269484 19269503 GCTTAAGGACTCCATTGCAG 59 NA Rattus norvegicus 81 Tmprss12 ENSRNOG00000031099 ENSRNOT00000041938 1 1 1 86 7 141955026 141955044 CTTGTGCACGTATGTGGTG 60 141955096 141958146 CTTGAGAGGATCGCTAGCC 60 NA Rattus norvegicus 81 Tmprss12 ENSRNOG00000031099 ENSRNOT00000041938 2 1 1 87 7 141955025 141955043 TCTTGTGCACGTATGTGGT 60 141955096 141958146 CTTGAGAGGATCGCTAGCC 60 NA Rattus norvegicus 81 Noxred1 ENSRNOG00000047312 ENSRNOT00000074037 2 1 1 81 6 111266847 111266866 TCGTTACCGAGGATTGATGG 60 111260861 111266804 CAGCAGTTTGCTCAAATCGT 60 NA Rattus norvegicus 81 Spink4 ENSRNOG00000008252 ENSRNOT00000060714 2 1 1 62 5 57248651 57248669 AGAATGAATGCCACCTCTG 58 57250628 57250648 CCTTCATGATCTGAATGTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Mrpl53 ENSRNOG00000052279 ENSRNOT00000084616 3 1 1 119 4 114807853 114808051 TCAACAAGGACCTTTCTCCA 59 114808133 114808151 GAATAACACGTCCACGCAG 59 NA Rattus norvegicus 81 Pramel ENSRNOG00000047492 ENSRNOT00000052196 1 1 1 80 X 106003660 106003680 GAACACCTTAAGGAACTCAGC 59 106003720 106004648 ACCAGGTGGTAAGATTCTGAG 59 NA Rattus norvegicus 81 Sept3 ENSRNOG00000007686 ENSRNOT00000010491 3 1 1 80 7 123514364 123514856 ATTGGGCATGTGATAGAGGA 59 123514898 123514917 GTTGATCTGGTCTCCAAAGC 59 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 3 2 2 81 19 55417370 55422944 CTGCTCATGGACGATATGG 58 55417307 55417326 CCATCCGGTCTAAATTTGGG 59 NA Rattus norvegicus 81 Olr419 ENSRNOG00000007962 ENSRNOT00000010465 3 1 1 60 3 20993654 20993672 CCTTGCCCATTCATATGCT 58 20993693 20993714 CATGCAGAAGGATAACTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560470 ENSRNOG00000033863 ENSRNOT00000040995 3 1 1 60 3 2800954 2800973 ATGGAAACGTTGATCCTGAC 58 2800913 2800931 CTTCACCCTCTTCGTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 2 1 2 145 2 166669336 166681789 GATGAAGAAATAGAGCCCAAGG 59 166655586 166655604 CTTCACACGCTTGAAATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr43 ENSRNOG00000018514 ENSRNOT00000024971 1 1 1 60 1 167720307 167720325 TTTGATCGCTTCATTGCCA 59 167720348 167720367 CTGAGTGAGGAAGGATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 5 6 80 20 3573453 3573907 ACAATCAGCTACCCTATGCT 59 3573950 3573968 CACAAAGTTAAGGGTGGCC 59 NA Rattus norvegicus 81 Crx ENSRNOG00000013890 ENSRNOT00000018858 1 1 1 80 1 77748322 77748340 AGTACCCGGATGTGTATGC 59 77745923 77748278 TCTTGAACCAGACCTGGAC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398,ENSRNOT00000067913 2 4 4 80 7 124235902 124238263 GGACGTTCTAAAGACCAAGG 58 124235841 124235859 ATGTTCTCCATGTACTGCG 58 NA Rattus norvegicus 81 Dok6 ENSRNOG00000038190 ENSRNOT00000058139 2 1 1 80 18 86614336 86685170 TTGTGAGTCAGAGCTGGAG 59 86614274 86614294 CTGATGTCATTCAGCCTTGTC 59 NA Rattus norvegicus 81 Izumo1r ENSRNOG00000019894 ENSRNOT00000051471 2 1 1 92 8 13418192 13418765 CTACTTTGAGTGCATGCCC 59 13418118 13418137 AAGTTAAAGAGCAAGGGCTC 58 NA Rattus norvegicus 81 Gse1 ENSRNOG00000017489 ENSRNOT00000023607 2 1 1 80 19 54147889 54148513 CTGCAGAAGCATAAAGGGAG 59 54148553 54148574 AATGTTGTAGTGGACTGATGTG 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991,ENSRNOT00000002705 3 2 5 80 14 22260782 22260800 CCATCAACACGATGACCAG 59 22260841 22267867 TGGCATTCTCCTTATAGGAAGG 60 NA Rattus norvegicus 81 Fam69c ENSRNOG00000015448 ENSRNOT00000020858 1 1 1 85 18 81587171 81587189 TCGACTGTTTCTCCAAGTG 57 81587237 81590683 TTTATCACAGATGACCTGCA 57 NA Rattus norvegicus 81 Sorcs3 ENSRNOG00000028832 ENSRNOT00000065001 2 1 1 80 1 268189280 268189300 ATACTGATCCTGACAAAGCTC 58 268189340 268291401 ACCATAATCTACTGACCTCCA 58 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000081406 1 1 3 84 9 81566994 81567014 AATACATTCCCAGAAAGAGGG 58 81586089 81586107 AAGTGAGATGGAGGCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr695 ENSRNOG00000050826 ENSRNOT00000047996 3 1 1 60 3 78322887 78322907 GGAAAGCTCTGTCTACTTGTG 59 78322847 78322866 CATGGGACAAAGAACAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 3 2 2 81 18 35762652 35762670 GAAGTGTGGACCAAGACCA 60 35749348 35762607 CTGCAGTTGTCCATGTCAG 59 NA Rattus norvegicus 81 Sys1 ENSRNOG00000014480 ENSRNOT00000030054 2 1 1 60 3 160911059 160911078 CTCAATGATGTCCTTCGTCC 59 160912075 160912093 GATGAAGTACAGCAAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Lpar5 ENSRNOG00000021401 ENSRNOT00000029053 3 1 1 60 4 157595461 157595480 TGGTAAAGAACAGCCTTCAG 58 157595502 157595521 AGCACCATTATCATCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.1 ENSRNOG00000046840 ENSRNOT00000060420 2 1 1 80 15 30812620 30812815 GATTTGCTGGGTGAGAGGA 59 30812856 30812877 CTCAGAGAAGAATTGGTTCCCT 60 NA Rattus norvegicus 81 Prr15l ENSRNOG00000049162 ENSRNOT00000073292 3 1 1 60 10 84871802 84871820 TGATGCAGGAGATCCTCAC 59 84871841 84871862 GTTCTTGTCCACAATCTTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360619 ENSRNOG00000053623 ENSRNOT00000087392 3 1 1 68 19 38643183 38643202 CAAGTCCTCCGAAGAGACTG 60 38643319 38643337 GTTGATGGCGGTGAAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000072184 1 1 4 60 8 53871786 53871804 CCTTGTTCCGTTGTCTCCT 60 53870133 53870152 TTCTGTGGTTGAAAGGACAG 58 NA DesignNoJunction Rattus norvegicus 81 Nek2 ENSRNOG00000004487 ENSRNOT00000006235 1 1 1 80 13 110512363 110512387 CTATACATTGTCATGGAGTACTGTG 59 110512420 110512700 TAAGTATTGTCTATCCTTGGTCCC 60 NA Rattus norvegicus 81 Rab11fip3 ENSRNOG00000032152 ENSRNOT00000027439 1 1 1 81 10 15353047 15353065 ATGAGGAGAACAGTGAGCT 58 15352336 15353002 ATCTTCTGCTTCTCCTCCT 57 NA Rattus norvegicus 81 Pdp2 ENSRNOG00000012343 ENSRNOT00000016462 3 1 1 91 19 599454 601399 GGACGAGGATACTAGGCTG 59 599381 599401 AAATTGAAGATCCGGTAGGAC 58 NA InUTR Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000064138 2 1 2 217 1 215135700 215136095 TCTGTTCCTGCTCTAGCTG 59 215143863 215143881 ACAACCTGAAGAGCAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Myh7b ENSRNOG00000018997 ENSRNOT00000025859 3 1 1 80 3 151128701 151129169 GGATGATCTACACATACTCGG 58 151129211 151129229 CCACAGTAGCTGTGTAGAC 57 NA Rattus norvegicus 81 Upf2 ENSRNOG00000023593 ENSRNOT00000058070 2 1 1 80 17 76199054 76199320 CTGATGAAGAGAATGCTGAGG 59 76198994 76199017 GAATGAAGTCCTCATCTTCTACAC 59 NA Rattus norvegicus 81 Rhbdl3 ENSRNOG00000005515 ENSRNOT00000007312 1 1 1 88 10 67711877 67723695 TTGTCATGAACTGGTCAGG 57 67729116 67729134 TCTCCCGAACTCCATACTC 58 NA Rattus norvegicus 81 Pop7 ENSRNOG00000025310 ENSRNOT00000001913 3 1 1 91 12 22259896 22260114 AGGGAAGAAGGACTTAGAGC 59 22260168 22260186 TTTCCGAAGGGTGTACTCC 59 NA InUTR Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000082473,ENSRNOT00000044470 1 3 4 80 7 123635859 123636017 TGAGATAGAGAAGGCCAAGG 59 123635798 123635816 CCAAACAGGTCATTGACCA 58 NA Rattus norvegicus 81 Stk24 ENSRNOG00000011511 ENSRNOT00000034723 1 1 1 80 15 106635484 106635502 ATCGACAGGTACAAGAGGT 58 106635053 106635441 GCTATCTGTCTCCACATCTG 58 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000054812,ENSRNOT00000065376,ENSRNOT00000082482 2 4 4 81 1 226772456 226773057 CTTATCCAGCTCTGGAAGG 57 226772393 226772411 ACTTGCAGGTCATAGTCAC 57 NA Rattus norvegicus 81 Olr423 ENSRNOG00000031803 ENSRNOT00000044947 1 1 1 60 3 21115191 21115210 CTACTTGCTGGGTACAATGG 58 21115229 21115251 GTATCTTAAAGGGTCACAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Topors ENSRNOG00000006485 ENSRNOT00000066081 3 1 1 84 5 56558459 56565042 GTCCTCGGAGATAATGGCC 60 56558393 56558411 CTGCTGCAGTTTGCTAGTG 60 NA Rattus norvegicus 81 Smek1 ENSRNOG00000027773 ENSRNOT00000034961 1 1 1 85 6 125042144 125043216 CTATTACCACAAAGGGAGGAC 58 125042079 125042098 GTCTTCCTTGTCTTCATCCT 57 NA Rattus norvegicus 81 AC123018.1 ENSRNOG00000042147 ENSRNOT00000065311 3 1 1 82 1 193844589 193844608 AAGAAGTTCATCAGGCACCA 60 193844653 193844694 CCCTTGAATTTGACGCCTC 59 NA Rattus norvegicus 81 Mug2 ENSRNOG00000033245 ENSRNOT00000072465 3 1 1 80 4 154277350 154277520 TGTATGCTCAGACTACGCT 58 154277562 154277582 GTACGGTCTTCACCTTTAGAG 58 NA Rattus norvegicus 81 LOC100909771 ENSRNOG00000048973 ENSRNOT00000073537 1 1 1 80 1 259940636 259940739 GTGTCTCTGCAAGATTATGCC 60 259940779 259940799 GATAATCCTCGAAGAAGCCAC 59 NA Rattus norvegicus 81 Ccnyl1 ENSRNOG00000023807 ENSRNOT00000049411 2 1 1 80 9 71427267 71427286 GGATGATCAGGCTGTATGGA 59 71427326 71430509 CTTTCCATCTCATTCATGTCCT 58 NA Rattus norvegicus 81 Tmem150b ENSRNOG00000028273 ENSRNOT00000032439 1 1 1 80 1 72694195 72694213 ACCAGCTAATTCTGTGGTC 57 72694257 72697061 GCTTCTGGTTCTTCTCCTG 58 NA Rattus norvegicus 81 Tmem150b ENSRNOG00000028273 ENSRNOT00000032439 2 1 1 80 1 72694194 72694213 AACCAGCTAATTCTGTGGTC 58 72694256 72697060 CTTCTGGTTCTTCTCCTGG 57 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 1 2 2 83 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177271 88226820 CTGGTATTTCCTCGGTCCC 60 NA Rattus norvegicus 81 Tas2r136 ENSRNOG00000029561 ENSRNOT00000052034 3 1 1 60 4 166978503 166978523 GGACTTTGTATCCTTCAAGCC 59 166978463 166978483 AGTTTGATCCTCCTATTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 3 2 2 92 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425224 159425243 TCTCATACCTAAGCACCGAC 59 NA Rattus norvegicus 81 Cenpe ENSRNOG00000009339 ENSRNOT00000034565 3 1 1 80 2 240430859 240431906 AAACAGAAGCAAGTGATCTGG 59 240431948 240431966 CGATGGTTTCTTGGTGCTC 59 NA Rattus norvegicus 81 Inpp5k ENSRNOG00000056954 ENSRNOT00000084496 2 1 1 80 10 63776419 63778347 GCTTATGCTCAGCATACACG 60 63778388 63778408 AGTTGAAGTAGGTCACTGAGG 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889,ENSRNOT00000046391 2 2 2 81 3 113127077 113127098 GAGAGCCAATCTCAGATCTG 58 113127015 113127033 GATGGTAATGGACTGGCTC 58 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 3 2 2 80 X 110862323 110862341 GCAGTTAAAGGCAGATGCT 59 110862385 110868099 GGGCCAATTTCCTTGTCTC 59 NA Rattus norvegicus 81 AABR07052431.1 ENSRNOG00000038559 ENSRNOT00000058819 1 1 1 60 3 53316205 53316223 AACACTTGACCCTCCAGAC 59 53316244 53316265 ACTCAATTCCTCTTCCTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052431.1 ENSRNOG00000038559 ENSRNOT00000058819 2 1 1 60 3 53316196 53316215 GATGCTTTCAACACTTGACC 58 53316238 53316256 CTCTTCCTTTGTGCTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armc3 ENSRNOG00000016716 ENSRNOT00000075188 1 1 1 80 17 85939195 85942478 AGACCAAGGAACTGAACGA 59 85942521 85942540 ACACCATTGTGTCCATATCC 58 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673,ENSRNOT00000091461 3 2 3 81 20 3346186 3346205 CCTGAAGATGCTTCATCCTC 58 3346246 3346361 TCTGGTATTCTTCTGAATCCAG 57 NA Rattus norvegicus 81 Plekhg4 ENSRNOG00000016479 ENSRNOT00000022439 3 1 1 80 19 37331899 37331917 TGACCGTACTAGTGGATGC 59 37331960 37332058 GGGATGCTTCTTGTAGTTGG 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 2 2 2 81 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409728 78409746 GCATCCTCTTCCTCCACTC 60 NA Rattus norvegicus 81 Cyp2s1 ENSRNOG00000020743 ENSRNOT00000028177 1 1 1 80 1 82603320 82603338 AGTTTCAGGCTGTGATCCA 59 82603179 82603276 AGAACATCTCGTAGGCCTG 59 NA Rattus norvegicus 81 Ephb4 ENSRNOG00000045952 ENSRNOT00000072208 1 1 1 80 12 22414220 22417777 GCCACTGCTTTAGAAGAGAC 59 22414159 22414177 TTCTGCCTGAGGGTAAGTC 59 NA Rattus norvegicus 81 Rttn ENSRNOG00000038200 ENSRNOT00000058160 2 1 1 80 18 86116111 86116129 TCCATATGCTGTCTCACCC 59 86116169 86117637 CTAAACACTCCTTCACAATCTCC 59 NA Rattus norvegicus 81 Atoh8 ENSRNOG00000010716 ENSRNOT00000014277 1 1 1 144 4 100087870 100087888 AACTACATCCTGTCCCTGG 58 100068322 100087762 TGACAGGTCACTCCTTACG 59 NA InUTR Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923,ENSRNOT00000008160 3 2 2 80 7 142598397 142608226 GTAATTCCAGGCCTGAAGAC 58 142608269 142608287 CACTGTCAGGATCATCACG 58 NA Rattus norvegicus 81 Pdf ENSRNOG00000022303 ENSRNOT00000036634 1 1 1 80 19 39245361 39246017 CAGATCTCAGGACTGGACC 59 39245299 39245317 CTCATGCTGGATGATTCGG 59 NA Rattus norvegicus 81 Suds3 ENSRNOG00000001139 ENSRNOT00000075646 2 1 1 80 12 45207345 45208596 TTCCTCCAGCTAGAAACGG 59 45208636 45208658 CTTGTCCTCAAACTCTTTCACAG 60 NA Rattus norvegicus 81 Pex3 ENSRNOG00000015660 ENSRNOT00000021524 2 1 1 80 1 7698530 7698550 CTTCTAGACAATATGGCGGAG 58 7688845 7698489 ACTGGACAGACTGTTTATGG 57 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000026685 1 1 3 95 4 158637985 158705709 GGATAATGATGAGATCTTACAGGTG 59 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA InUTR Rattus norvegicus 81 Agpat2 ENSRNOG00000019466 ENSRNOT00000026408 1 1 1 80 3 4045907 4045925 ATCCCTGTGGTGTACTCCT 60 4044900 4045864 TTGTACCCTGATCGTTCCTG 60 NA Rattus norvegicus 81 Txlna ENSRNOG00000048242 ENSRNOT00000072165 3 1 1 80 5 147836431 147836449 CTAGAGAACGTGGAGCTGG 60 147836062 147836389 GACTTTGTCGATATGCTCCTC 59 NA Rattus norvegicus 81 Csn2 ENSRNOG00000039326 ENSRNOT00000060265 1 1 1 82 14 21974782 21974922 CCTCTGAGACTGGTAGTATTTCC 60 21976023 21976042 CTGTCCCATGAGTTTCACCT 60 NA Rattus norvegicus 81 Pla2g12b ENSRNOG00000046619 ENSRNOT00000074524 2 1 1 80 20 28989792 28998166 CGGTGTCGATATGGAAAGG 58 28998208 28998228 CAGGAAATAGGAACCACAACC 59 NA Rattus norvegicus 81 Mir291a ENSRNOG00000051974 ENSRNOT00000083441 1 1 1 60 1 64538466 64538486 GGTGTAGTAGCCATCAAAGTG 59 64538426 64538444 AGTGGAAGCACTTTCTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc5b ENSRNOG00000019846 ENSRNOT00000028967 2 1 1 80 1 214781196 214781590 CAAGCATAAGTGCCTTACACC 60 214781626 214781650 CATCGAAGGTCTTATAATGGAAGTC 60 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000085901 2 1 3 97 9 81562790 81563016 TCCTCCCTGATGGAAAGAG 58 81562711 81562730 ACCTTTCAGTACATGGATGG 57 NA Rattus norvegicus 81 Tmem72 ENSRNOG00000023340 ENSRNOT00000037397 1 1 1 80 4 148844841 148844860 TGAAGCTCCAAGTATTCTGG 57 148829188 148844798 CTCCAATCAGTACTGCAGC 58 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 2 2 2 80 10 27142651 27145087 TCTCCAGTTATGGTTATCCTCG 59 27142592 27142610 ATGACCTTGTGTCTCCCAC 59 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000011226 ENSRNOT00000015043 1 1 1 80 X 105352694 105352719 GCATGGATAAGCCTAAGTTGG 59 105352634 105352654 ACTGGCTTGTATCAATGAAGC 59 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000089980,ENSRNOT00000043799 3 2 2 81 5 140830827 140830845 TTTGGACGGACAATTCGTG 59 140830343 140830783 CATCATCTGACCAAACTGGC 59 NA Rattus norvegicus 81 Lmod2 ENSRNOG00000045831 ENSRNOT00000073466 2 1 1 122 4 51553842 51558886 GAATGTGGAAAGCTTGCAG 58 51558972 51558990 TTCCTCTGTAGACTCCTCC 57 NA Rattus norvegicus 81 Pcdhb15 ENSRNOG00000020054 ENSRNOT00000027164 1 1 1 60 18 30551870 30551891 ACTGTGGTTGTAGAGGTAATGG 60 30551910 30551930 GTGACGACAAGAGAAACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563124 ENSRNOG00000031205 ENSRNOT00000047587 3 1 1 60 7 23952846 23952870 GAGAAGAATCTGAAAGAGAAAGGAC 60 23952810 23952831 TAGTGATTCTCAGTGTCTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prima1 ENSRNOG00000008915 ENSRNOT00000011906 3 1 1 83 6 127078926 127083806 CCATAAAGAGGAAACCACTGAG 59 127078864 127078882 CTTTGTTACTCGGCGAGGA 60 NA Rattus norvegicus 81 AABR07009787.1 ENSRNOG00000050049 ENSRNOT00000075017 3 1 1 80 2 112364768 112364786 TCCTATGCTAAGGTTGGCA 58 112363033 112364074 GGGATATACCATCTGCTGCT 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100,ENSRNOT00000061303,ENSRNOT00000048137,ENSRNOT00000048353,ENSRNOT00000012129 2 5 5 80 3 2268940 2269102 AGAGGACATGATCCACTTCTG 59 2269142 2269162 ATGATGTGGATGACATTTGGC 59 NA Rattus norvegicus 81 Smim23 ENSRNOG00000027196 ENSRNOT00000031337 2 1 1 80 10 17721081 17721099 ACTGTGATGACAGGAAGCA 59 17718170 17718366 AACTGCTTCCTGATATCCCT 58 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 3 2 2 81 12 22157213 22157864 CTCAAACCAGGTGATCATGC 59 22157906 22157926 CACACTGACAGAGTCATATCG 58 NA Rattus norvegicus 81 Hoxa9 ENSRNOG00000048146 ENSRNOT00000071668 2 1 1 102 4 82278989 82280156 CATCGATCCCAATAACCCG 58 82278905 82278923 TTCTTTCTCCAGTTCCAGC 57 NA Rattus norvegicus 81 Psen1 ENSRNOG00000009110 ENSRNOT00000012495 2 1 1 80 6 107197810 107197830 CCATCATGATCAGTGTCATCG 59 107197871 107205528 CATGGATGACCTTGTAGCAC 59 NA Rattus norvegicus 81 Ppid ENSRNOG00000027408 ENSRNOT00000037890 2 1 1 80 2 178365945 178366605 CCAGGAGATAAAGCTATCCAGG 60 178366641 178366664 CACTGCCTTCTCTTTATCTTTCTG 60 NA Rattus norvegicus 81 Mylk2 ENSRNOG00000008235 ENSRNOT00000011255 2 1 1 80 3 148394554 148395138 TGATCACCTACATGCTACTGAG 60 148395178 148395197 CAGACAGGACGTTGTTTAGG 59 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000048115 ENSRNOT00000075625 1 1 1 90 15 30926975 30927087 TTCTCATGAGAGTTGCCCA 59 30927141 30927159 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Gad2 ENSRNOG00000018200 ENSRNOT00000024901 2 1 1 80 17 89185301 89185322 AAGATGTTTCCAGAAGTCAAGG 59 89185361 89197831 AAAGTGACTATGCTCTGACGT 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235,ENSRNOT00000080442 1 2 2 81 1 215226061 215226079 CATAGAATCCAGGGTGGCA 59 215226123 215227798 GTACACGGAGTTCACATCAG 58 NA Rattus norvegicus 81 LOC362921 ENSRNOG00000033584 ENSRNOT00000042213 1 1 1 80 7 101214558 101214577 CATAAGAGCAGGTGTTCTGG 58 101203730 101214516 CCAATGTACATGGCCTTAGC 59 NA Rattus norvegicus 81 LOC362921 ENSRNOG00000033584 ENSRNOT00000042213 2 1 1 80 7 101214557 101214577 CATAAGAGCAGGTGTTCTGGA 60 101203730 101214516 CCAATGTACATGGCCTTAGC 59 NA Rattus norvegicus 81 Snca ENSRNOG00000008656 ENSRNOT00000039247 2 1 1 80 4 90870288 90880871 GCGTCCTCTATGTAGGTTCC 60 90864821 90864842 CTTGTTCTTTGGTCTTCTCAGC 60 NA Rattus norvegicus 81 Slc45a4 ENSRNOG00000007818 ENSRNOT00000032620 3 1 1 81 7 114830558 114847792 TTACAGATAGGCCTCCCTG 58 114830495 114830513 TAAGCGGTGTGAAGATGAG 57 NA Rattus norvegicus 81 Bfsp2 ENSRNOG00000010899 ENSRNOT00000032376 3 1 1 80 8 111935853 111937009 CAAGAAGCTATGAAGAGGATGTG 59 111935795 111935814 CCATGGGAACATCTGTTTGC 60 NA Rattus norvegicus 81 Rrp7a ENSRNOG00000022896 ENSRNOT00000034983 3 1 1 80 7 123986414 123986432 CTGCTTTGAACCTGAAGGG 59 123985595 123986372 CACTGATCCACTTGTGAATCC 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436,ENSRNOT00000075671 3 3 3 98 12 11080612 11082602 TCCTCTACGGATTTGGGAC 59 11080532 11080550 AGTAATTCAGCACAGTGCC 58 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000015332 ENSRNOT00000046718 1 1 1 80 18 1148681 1149644 CCACTTGGAAGTCAAACCT 58 1149688 1149706 AACAATATTGCTGACGCCA 58 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 1 2 2 80 10 34953499 34954386 TTTGGTCTCCAGGCTAAAGG 60 34954429 34954447 GGAGGCTTGAACTTCAGGA 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 2 3 3 80 7 28728085 28728105 ATTTGGTGTTTCATCCCAGAG 59 28728146 28737444 CTTCCAAGCTCCAAATCCTG 59 NA Rattus norvegicus 81 Zfyve1 ENSRNOG00000008614 ENSRNOT00000011662 1 1 1 80 6 107039580 107039599 GTTTGGGAACCAAGATCCTG 59 107037274 107039538 TTCAGAAATGCATCCGTTCC 59 NA Rattus norvegicus 81 Cox7b ENSRNOG00000054689 ENSRNOT00000090007 3 1 1 81 X 77065514 77069156 TAAGTCGTCTCCAAGTTCGA 59 77069198 77069218 TTGTCATGGAAAGTAGGTGTC 58 NA Rattus norvegicus 81 RGD1311783 ENSRNOG00000020076 ENSRNOT00000027196 2 1 1 80 1 266461684 266462427 CTTCAGTACCAGCAAGAAGC 59 266463097 266463118 CTTCAGTAAATGACTCAGCTGG 59 NA Rattus norvegicus 81 RGD1308923 ENSRNOG00000036876 ENSRNOT00000055361 2 1 1 124 5 172649695 172649713 AAGTAAGAGTGAGCCGTGG 59 172649801 172649922 GGTCAGGCAGAGATTCCTG 60 NA Rattus norvegicus 81 L3hypdh ENSRNOG00000004503 ENSRNOT00000006284 2 1 1 91 6 94824692 94828093 CTGTGAGGGAAGCAAAGTG 59 94824619 94824637 CACTGTCAGGTTTGCTGTC 59 NA Rattus norvegicus 81 Vwde ENSRNOG00000024709 ENSRNOT00000029602 3 1 1 80 4 39678140 39678938 CGACTTGGAGATAGGATATTCTG 58 39678082 39678102 GCTTTCAACAGCTATACTTGG 57 NA Rattus norvegicus 81 Mob3a ENSRNOG00000018971 ENSRNOT00000025634 2 1 1 83 7 11892938 11892961 GCTATAAGCACTTCTACTACTTCG 59 11893003 11894463 GCGATGTCATCTCCTTCAG 58 NA Rattus norvegicus 81 Gskip ENSRNOG00000042427 ENSRNOT00000006307 2 1 1 91 6 129519787 129532669 GCTCGCAGAATGGAAACAG 60 129532723 129532742 GTTCCTTCAAACCCGTTGAG 60 NA Rattus norvegicus 81 Hist1h2bd ENSRNOG00000060769 ENSRNOT00000084303 3 1 1 60 17 44834091 44834109 TCGTGAACGACATCTTCGA 59 44834049 44834067 TTGTTGTAATGAGCCAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Colec12 ENSRNOG00000016366 ENSRNOT00000065494 3 1 1 80 18 1049939 1049958 CAGTGGAATGACTTCCAGTG 59 1049998 1052032 TAATATGGATGATGGTACTGCC 58 NA Rattus norvegicus 81 Fxyd3 ENSRNOG00000021095 ENSRNOT00000028637 2 1 1 80 1 89503510 89504236 CCCTTTCTACTATGATTGGCAC 59 89503451 89503469 ACTATAATGCCCAGGGCAC 60 NA Rattus norvegicus 81 Rn60_2_2281.4 ENSRNOG00000051107 ENSRNOT00000076959 2 1 1 62 2 208593289 208594253 CAAGGAGAGGAACAGGGAG 59 208594279 208594297 GATGTGCCAAAGTTCCACC 60 NA DesignRelaxed Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083542 3 1 8 108 3 100769263 100815564 CAAAGCCACAATGTTCCAC 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA InUTR Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 1 2 2 80 1 221743902 221743923 GAAGATGAACCTCTTCATGCTC 59 221743960 221744085 GATGTTTCTGATCTGTTCCACTG 60 NA Rattus norvegicus 81 Rbm45 ENSRNOG00000010595 ENSRNOT00000042968 3 1 1 80 3 63227370 63227391 AGATTATTACAGTAGCGTGAGG 58 63227432 63228264 TGTTGTTCTCCAACGAAGG 58 NA Rattus norvegicus 81 RGD1566369 ENSRNOG00000005017 ENSRNOT00000006662 1 1 1 60 17 88140059 88140077 TTCTCGCCTGTATTGCCTC 60 88140017 88140035 TCGAGCACATAGCCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055527.1 ENSRNOG00000039997 ENSRNOT00000061482 1 1 1 97 7 4951956 4951976 CCCAATTAAAGTAACACTGGC 58 4952035 4952147 CTAACAGTTGACCACAGGT 57 NA Rattus norvegicus 81 Tnfaip3 ENSRNOG00000049517 ENSRNOT00000074583 1 1 1 80 1 14405589 14405926 GCTGCCAAGTTAGATGAAGC 60 14405528 14405547 GTATTCGTGCTGAACAAGCT 59 NA Rattus norvegicus 81 Olr858 ENSRNOG00000050546 ENSRNOT00000073594 3 1 1 60 5 137758283 137758302 GCCATCATGTCCATAGACAG 58 137758323 137758343 TGATGACCTTGTACCTGAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb8a ENSRNOG00000008300 ENSRNOT00000010983 3 1 1 81 5 147565809 147565829 CTGAAGTGGATCCTGTTTCTG 59 147564220 147565766 GGCAGATTGTCTGGAAAGC 59 NA Rattus norvegicus 81 AABR07003244.1 ENSRNOG00000050893 ENSRNOT00000072944 2 1 1 81 1 99941211 99941230 CTATTCACAGAGGGTGACAG 58 99940900 99941167 CACCATGGAGATCATGCAG 58 NA Rattus norvegicus 81 Olr458 ENSRNOG00000029578 ENSRNOT00000048041 1 1 1 60 3 73048840 73048861 ATCTACTCAAGCATCATGTCGT 60 73048801 73048824 CTATGTAACACCCAACTACTAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 2 2 2 80 13 84789727 84789747 AGTCTTTGATGGGATTCTGGT 59 84787907 84789687 TTCTCAATACCTGGGAAGGAC 59 NA Rattus norvegicus 81 Zbtb7c ENSRNOG00000047924 ENSRNOT00000072519 2 1 1 222 18 72452905 72452923 TCTCAACTTCCTGAGTGCC 59 72453109 72459927 CTTCAGTTTGTCCTGCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000080961,ENSRNOT00000088679 2 3 5 80 9 81661229 81661594 CCTGGATAACTATGGTTTGCG 59 81661635 81661654 TCATAACCGAAGGTCAAAGC 58 NA Rattus norvegicus 81 Pwwp2a ENSRNOG00000003936 ENSRNOT00000067013 1 1 1 80 10 29330389 29330408 CTTACAGTGTCTGACAGACC 58 29330451 29333225 TAATGTCTTTGTGCTGCCC 59 NA Rattus norvegicus 81 MGC94199 ENSRNOG00000049287 ENSRNOT00000070963 1 1 1 82 5 23372113 23372132 TGACTTCCAGATAGTGAGCT 58 23372176 23376273 ATTCTGGCATGTTGTTTCTG 57 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000087295 3 1 12 87 20 3363757 3364248 CATTCCTGGGTACAGGTCG 60 3364299 3364317 CCTTGGAGCAACTGTATGC 59 NA Rattus norvegicus 81 Cxcl17 ENSRNOG00000037814 ENSRNOT00000057433 2 1 1 85 1 82269991 82270777 CTGCAAAGATTGGTCCCTG 59 82269924 82269942 CATGATCACAGGGACACTG 58 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316,ENSRNOT00000091595,ENSRNOT00000048306 3 3 3 144 11 84425646 84426262 GTGAACTGCAGAAGACTAGAG 58 84426368 84426386 CCAACTGCGTGATCATCAG 59 NA Rattus norvegicus 81 Pabpc6 ENSRNOG00000017367 ENSRNOT00000023319 2 1 1 60 1 51620866 51620887 CGATGATGGTATTGATGACGAG 59 51620907 51620926 AGTGATAGTCCCAAACGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 3 2 2 81 X 71615838 71616846 TACCTTGAGGTCAGTGAACG 60 71615776 71615795 AATCGTAGGGAGATGTGCTG 60 NA Rattus norvegicus 81 Klhdc7a ENSRNOG00000018867 ENSRNOT00000025517 2 1 1 60 5 158438294 158438312 GTGCTTCCCATACCTTCTC 58 158438252 158438272 TTCTGTATCACGTTCTCCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actg1 ENSRNOG00000036701 ENSRNOT00000054976 2 1 1 95 10 109519264 109519393 GAAGATTAAGATCATTGCTCCTCC 60 109519192 109519210 ATCCACATCTGCTGGAAGG 60 NA Rattus norvegicus 81 Rsph6a ENSRNOG00000061526 ENSRNOT00000090515 3 1 1 90 1 79960261 79962052 AACCTCAGCCTGTATGAGC 60 79962106 79962124 TCAGAGACTCCAGGATGGA 59 NA Rattus norvegicus 81 LOC100910682 ENSRNOG00000050481 ENSRNOT00000071629 3 1 1 60 5 137786049 137786067 ATTGTCACCTTGATCCACC 57 137786089 137786109 CACTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kir3dl1 ENSRNOG00000027843 ENSRNOT00000039823 2 1 1 80 1 73308967 73314233 CCTTCCTGCCAAAGATAACC 59 73308906 73308924 ATGACGACGATGACAAGGA 59 NA Rattus norvegicus 81 Fcamr ENSRNOG00000004393 ENSRNOT00000029694 2 1 1 84 13 47550777 47551577 GAGGACCTCTCAGAAGACAG 59 47551624 47551642 CTCACCAGGGAGCTTATCC 59 NA Rattus norvegicus 81 Nipa1 ENSRNOG00000042702 ENSRNOT00000068501 2 1 1 85 1 114393365 114393383 CGTGCTGATCATCCATTCC 59 114388133 114393317 CCACAAACACTGGATTGGTC 60 NA Rattus norvegicus 81 Abhd16b ENSRNOG00000015067 ENSRNOT00000020210 2 1 1 60 3 176986859 176986879 GGTTTATGGCTGGTCTATAGG 58 176986900 176986919 TTCTGGGTAAGTCATGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pofut2 ENSRNOG00000001228 ENSRNOT00000001644 3 1 1 80 20 12120563 12121510 CCAGGATGAAGGTCAAACTG 59 12120502 12120520 CCCAGATGAAGTCCTTCCT 58 NA Rattus norvegicus 81 Rbm12 ENSRNOG00000019723 ENSRNOT00000047246 3 1 1 60 3 151641963 151641984 GGTAGTTTAAATGCTCCTCCTG 59 151641924 151641943 TAGGAACACTTCCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smr3a ENSRNOG00000001949 ENSRNOT00000002669 1 1 1 104 14 21703819 21707236 ATGCTTCCTGTCTGGTGAG 59 21703733 21703751 ATTCCTGGACCAAAGGGAG 59 NA Rattus norvegicus 81 Vom1r96 ENSRNOG00000058628 ENSRNOT00000080669 1 1 1 60 4 121870828 121870848 AGGTCTAAGCCCATTGATCTG 60 121870870 121870888 CAAGCAGCATTAGTTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr696 ENSRNOG00000006433 ENSRNOT00000008419 1 1 1 60 3 78193368 78193388 ATCACCTACATTGTCACTGTC 58 78193328 78193346 GGCTACAAACTATGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr696 ENSRNOG00000006433 ENSRNOT00000008419 3 1 1 60 3 78193364 78193383 CTACATTGTCACTGTCACGG 59 78193323 78193342 ACTCTGGCTACAAACTATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl20 ENSRNOG00000036918 ENSRNOT00000055442 2 1 1 86 4 183657265 183657285 AGTCATCCTGCTTTCTAACTC 58 183657330 183658536 CTGGAATTTCTGAATCTGACTG 57 NA InUTR Rattus norvegicus 81 Fam3c ENSRNOG00000060349 ENSRNOT00000090583 2 1 1 80 4 49414490 49422721 TAGGAAGTCTATTTGCCCGA 58 49413502 49413522 TTGAGATCCCACATTTGTACC 58 NA Rattus norvegicus 81 Mrgprb4 ENSRNOG00000033021 ENSRNOT00000045792 1 1 1 60 1 103426271 103426290 CATAGGAATGCCTTCTCCGT 60 103426230 103426250 AGAGGTACAAGAAATCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366231 ENSRNOG00000048244 ENSRNOT00000074040 1 1 1 80 1 147061190 147061303 TTATCGTGGAAACGCAAGAG 59 147061129 147061148 TTTCTTCAGAGCAGTCATGG 58 NA Rattus norvegicus 81 Trappc2l ENSRNOG00000014581 ENSRNOT00000019740 3 1 1 81 19 55425783 55425804 CAAGGTGAAATTTGTCATGGTG 59 55425846 55425978 CAGCTTCCGGAACATACTG 58 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 2 2 2 85 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723700 TTGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Sestd1 ENSRNOG00000012603 ENSRNOT00000016837 1 1 1 80 3 64075378 64075398 CATTGCTAGATGAACTCGCTC 59 64072562 64075338 TTAAATCCACGGACCTTTCCT 60 NA Rattus norvegicus 81 Cldn11 ENSRNOG00000010263 ENSRNOT00000014359 2 1 1 87 2 115832919 115836438 CTCATCCTCCCTGGTTACG 59 115832850 115832868 TTAACAGCAGCAAGATGGC 59 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050740 ENSRNOT00000067263 2 1 1 61 15 30296309 30296424 GGGATAAACTTTCTCCTGAGAG 58 30296269 30296287 ACATGAGCATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107,ENSRNOT00000086957 3 2 2 81 8 53420539 53420760 GATATTTCAGGCTCACTCAACAC 60 53420801 53420819 GAGAGCTGAGCAAACTCCT 59 NA Rattus norvegicus 81 Rn60_2_2278.1 ENSRNOG00000046624 ENSRNOT00000074344 3 1 1 60 2 208356991 208357009 GAGATGATGACGTTCCCGA 59 208356949 208356969 TTCCTTTAAAGTCCCGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909521 ENSRNOG00000001416 ENSRNOT00000041808 1 1 1 80 12 22679941 22680083 TTCTCTTCGGAGTCTCTGG 58 22679879 22679899 GTAGAAGGAAGCAGAAGAGGA 59 NA InUTR Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 1 2 2 80 1 260896734 260896753 AGCTGAACGGTATCAAATCC 58 260896274 260896693 GGTTGTTACTCAGGTCTATCC 58 NA Rattus norvegicus 81 Alx3 ENSRNOG00000018290 ENSRNOT00000024611 3 1 1 84 2 210382083 210382101 AACCCACTACCCTGATGTG 59 210382149 210385449 CTGGAACCAGACCTGTACC 59 NA Rattus norvegicus 81 Spink2 ENSRNOG00000047065 ENSRNOT00000075226 2 1 1 83 14 33249355 33251599 CAATTCAGAACACCAGACTGTC 60 33251643 33251661 GTTCATATCCGTTCCGCAC 59 NA Rattus norvegicus 81 LOC100910637 ENSRNOG00000049190 ENSRNOT00000073447 1 1 1 60 1 169660475 169660493 TACTCCACCATCCTCACCA 60 169660516 169660535 CTCTCAAGAAGGTAGCAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11e ENSRNOG00000022255 ENSRNOT00000036948 2 1 1 80 14 23089764 23089788 CATCTCTTTCTTATCCCTGATTGTC 60 23089822 23092894 GTTCTCCTGTGATTGTATCTGAC 59 NA Rattus norvegicus 81 Fuom ENSRNOG00000018476 ENSRNOT00000024976 3 1 1 89 1 212566583 212566601 CCAGTGACAAGGAGAAGGG 60 212565350 212566531 TCCTCAGGGCTTTCTTACAG 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 3 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671839 CCCTTCATACTTTGGTATTCCT 58 NA Rattus norvegicus 81 Bbox1 ENSRNOG00000059519 ENSRNOT00000080175 1 1 1 80 3 101430122 101430141 TGAAGGAGTTTGTTGACCTG 58 101427195 101430081 CAAAGGTAATCCACTGACCTG 59 NA Rattus norvegicus 81 Qpctl ENSRNOG00000015413 ENSRNOT00000021200 1 1 1 80 1 80054451 80055719 CAATCTCCAAGTGAGAAAGTTCC 60 80054393 80054411 GTGAATGGGTCCAGTTCCA 60 NA Rattus norvegicus 81 Frs3 ENSRNOG00000014328 ENSRNOT00000019404 3 1 1 151 9 15302481 15303279 AGTTCAAGGTGACAAATGTGG 59 15302350 15302369 ATTGGAGTCGTAGCCATAGC 60 NA Rattus norvegicus 81 Mafg ENSRNOG00000036697 ENSRNOT00000054970 1 1 1 93 10 109807522 109807621 CCTTAAAGGTGAAGCGGGA 60 109807447 109807465 AGGTGCTGGTTCAACTCTC 60 NA Rattus norvegicus 81 Acsm3 ENSRNOG00000032246 ENSRNOT00000020039 3 1 1 80 1 189529047 189529302 CATCTTGCAAACCCTCTCC 59 189529343 189529364 TCATTCTGTATAAGCATCCGGT 60 NA Rattus norvegicus 81 Tiam2 ENSRNOG00000016728 ENSRNOT00000065386 1 1 1 80 1 44337642 44337661 CAGAAGGAGAGGAAACTGGA 59 44337702 44343630 CATCAGAGTACAGCCTTTCAG 59 NA Rattus norvegicus 81 AABR07017597.1 ENSRNOG00000049670 ENSRNOT00000073133 1 1 1 92 15 29109018 29109224 TTCAGCTACACAGGGTGAG 59 29109280 29109298 TACAGTTGAAAGAGGCCGT 59 NA Rattus norvegicus 81 AABR07017597.1 ENSRNOG00000049670 ENSRNOT00000073133 2 1 1 93 15 29109018 29109224 TTCAGCTACACAGGGTGAG 59 29109281 29109299 GTACAGTTGAAAGAGGCCG 59 NA Rattus norvegicus 81 AABR07068851.1 ENSRNOG00000059237 ENSRNOT00000089735 2 1 1 80 9 121946681 121951243 ATTCAACAAAGGCAGTTCCA 58 121946620 121946639 GAATGCTGCTTGAGTCTACC 59 NA Rattus norvegicus 81 Thbd ENSRNOG00000004687 ENSRNOT00000006200 3 1 1 60 3 142751096 142751114 CTATGAGTTGGTGGACGGA 59 142751054 142751074 GCATTTAGATCTGAAGCACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppat ENSRNOG00000002128 ENSRNOT00000002905 3 1 1 80 14 33604411 33604432 GAAATGATTACCCAGTTACTCG 57 33604470 33604596 GTTCTTAATTCTTGCTACCCAG 57 NA Rattus norvegicus 81 RGD1309108 ENSRNOG00000008138 ENSRNOT00000010743 1 1 1 80 8 45097561 45097580 GAAGACTAAGAAGCCATCCA 57 45094160 45097519 GAAGAGTGGAGTTTCCAGAG 58 NA Rattus norvegicus 81 Slc6a1 ENSRNOG00000006527 ENSRNOT00000009705 1 1 1 80 4 146285605 146285623 TGAACTCTTCATTGCTGCC 59 146285666 146286875 AAGACATAAATGCCACCCTG 58 NA Rattus norvegicus 81 Slc6a1 ENSRNOG00000006527 ENSRNOT00000009705 2 1 1 80 4 146285606 146285624 GAACTCTTCATTGCTGCCG 60 146285666 146286876 GAAGACATAAATGCCACCCTG 59 NA Rattus norvegicus 81 Hhat ENSRNOG00000003925 ENSRNOT00000072729 1 1 1 81 13 111404412 111404430 CATGTTCAGCTTCACAGGG 59 111304122 111372452 CAGTGGGATATACACATACCTG 58 NA Rattus norvegicus 81 Hhat ENSRNOG00000003925 ENSRNOT00000072729 2 1 1 82 13 111404413 111404431 CCATGTTCAGCTTCACAGG 59 111304122 111372452 CAGTGGGATATACACATACCTG 58 NA Rattus norvegicus 81 Zfp319 ENSRNOG00000013460 ENSRNOT00000017971 1 1 1 80 19 10119445 10119463 TGGAGCCGGAATAAAGAGG 59 10119506 10121256 TAATCGATTCTGCTCCAGGG 59 NA InUTR Rattus norvegicus 81 Olr1232 ENSRNOG00000060071 ENSRNOT00000088564 3 1 1 60 4 1436782 1436801 TATTTCTGTGACCTCCTCCC 59 1436823 1436842 TCTCATTGACATAGGTGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028049.1 ENSRNOG00000048452 ENSRNOT00000075683 2 1 1 60 17 54808226 54808244 CAGTAGAGTGAGGGCTGAG 59 54808184 54808203 AGGATACTCTCGAACTTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000077465 3 1 2 80 8 21489298 21489318 CAGATCAGAGAACCCTCTACC 59 21481705 21489261 GTTTGATGAGCTGATATCCTACTG 59 NA Rattus norvegicus 81 Olr1293 ENSRNOG00000047227 ENSRNOT00000075675 1 1 1 60 15 36302840 36302860 CCCTCTTCTTCCTCTTCACAG 60 36302800 36302818 ATTATGCCCAGGTTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htatip2 ENSRNOG00000022189 ENSRNOT00000036258 1 1 1 80 1 105095040 105097611 ACAATGTGAATCAAGAGGTGG 59 105097652 105097671 AGAATCCAACATCGTGACCT 59 NA Rattus norvegicus 81 Mir199a2 ENSRNOG00000036364 ENSRNOT00000054483 2 1 1 60 13 80125524 80125543 TTCAGACTACCTGTTCAGGA 58 80125566 80125584 CCCAGTCTAACCAATGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 2 2 2 81 5 133766381 133786200 CGCATTGTTGAGAAATATGGC 59 133766320 133766341 ACTGTGAATCTGGATTCTTCCT 59 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 3 2 2 80 1 197211341 197211359 CTCATGATGTGGACATCCG 58 197211401 197220544 CCTTCTTGCTCACTAAATCCC 59 NA Rattus norvegicus 81 Mir152 ENSRNOG00000035539 ENSRNOT00000053662 3 1 1 61 10 84719331 84719350 CCAGGTTCTGTGATACACTC 58 84719374 84719392 CCCAAGTTCTGTCATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sphk2 ENSRNOG00000021032 ENSRNOT00000028549 3 1 1 86 1 101695061 101695187 AACCTCATACAGACAGAACGA 59 101694995 101695013 CACAGTGACAATGCCTTCC 59 NA Rattus norvegicus 81 Slc9a7 ENSRNOG00000004150 ENSRNOT00000005623 3 1 1 80 X 2612592 2614269 GGTGTATGATAACCAAGAGCC 59 2614311 2614329 CCATAGGTCAAGGTGAGGT 58 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 2 2 2 80 13 103185836 103185930 AAGTCAGAAGAGGAGTTCCA 58 103185973 103185991 TAGAACCGCACATAACCAG 57 NA Rattus norvegicus 81 Folh1 ENSRNOG00000013770 ENSRNOT00000018592 2 1 1 80 1 150365722 150380680 TCCAGCAAATGAATATGCCT 58 150365661 150365680 TATCCAATTGGATGGACAGG 57 NA Rattus norvegicus 81 LOC688452 ENSRNOG00000039076 ENSRNOT00000014598 2 1 1 85 1 59705216 59705235 GACTCCAAGATACGCAAGTG 59 59705278 59706077 CTCCTCTCATCATAGTTGATTTCC 59 NA Rattus norvegicus 81 Chic2 ENSRNOG00000002267 ENSRNOT00000003085 1 1 1 85 14 35683816 35697104 GTCACCGTATTTGGACTGAG 58 35697283 35697302 GCTTTAAATTCTTCAGGCGC 59 NA Rattus norvegicus 81 Pcdhgb6 ENSRNOG00000039455 ENSRNOT00000060466 2 1 1 60 18 30892072 30892093 TACAAGTTAGTAACCGATGGAG 58 30892113 30892132 TGGTGACATTATACTGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065406.1 ENSRNOG00000005718 ENSRNOT00000007522 2 1 1 81 6 125864339 125864357 AAAGACTGAAGGCCAAGAG 57 125864403 125864421 TTAAGAGTCTACCAGGCCA 57 NA DesignNoJunction Rattus norvegicus 81 AABR07071968.1 ENSRNOG00000033924 ENSRNOT00000050823 2 1 1 60 1 178367653 178367672 AACAAGAACAAAGGCATCAC 57 178367612 178367632 TGGGAATCTCCAAATACTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem151a ENSRNOG00000049951 ENSRNOT00000075365 1 1 1 60 1 220375196 220375215 CACAGGTCTACCATGAGAGG 59 220375155 220375174 GCACTGTAGTCAAACTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem151a ENSRNOG00000049951 ENSRNOT00000075365 3 1 1 60 1 220375197 220375216 ACACAGGTCTACCATGAGAG 59 220375156 220375175 CACTGTAGTCAAACTCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr444 ENSRNOG00000053361 ENSRNOT00000091920 2 1 1 60 3 72990680 72990699 TGGCAACTGAATGCTTTCTC 59 72990722 72990740 TTACAGATGGCTGCATACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl26 ENSRNOG00000001444 ENSRNOT00000001963 3 1 1 80 12 24159093 24161619 TGAGGGCGTCATATTCACC 60 24161661 24161681 GAAATGTATCTCTGCACCCAC 59 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728,ENSRNOT00000042506 1 2 2 80 10 72160097 72161127 TAAAGAAAGGCATGTCTCCAC 58 72160037 72160056 GAGAACCTGTCTCACTTCCT 59 NA Rattus norvegicus 81 Cdh24 ENSRNOG00000013503 ENSRNOT00000036150 2 1 1 81 15 33285149 33285168 TCAATGACAATCCACCTGTG 58 33284904 33285105 ATTACAGACGTCCCAACGT 59 NA Rattus norvegicus 81 Cdh24 ENSRNOG00000013503 ENSRNOT00000036150 3 1 1 82 15 33285149 33285168 TCAATGACAATCCACCTGTG 58 33284903 33285104 GATTACAGACGTCCCAACG 58 NA Rattus norvegicus 81 Olr670 ENSRNOG00000046773 ENSRNOT00000050849 1 1 1 60 3 77695596 77695615 ACAGTTCTGAAGGAAGACGG 60 77695555 77695574 ACCACAACAGTAATGTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr670 ENSRNOG00000046773 ENSRNOT00000050849 3 1 1 60 3 77695597 77695616 CACAGTTCTGAAGGAAGACG 59 77695556 77695574 CCACAACAGTAATGTGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000044788,ENSRNOT00000079633 3 2 2 110 1 101512304 101512767 GTAGAAAGGTGCACTTCTCTG 59 101512214 101512232 TTCGATCTCGTGCAAACTG 59 NA Rattus norvegicus 81 Mbd3 ENSRNOG00000028956 ENSRNOT00000049170 3 1 1 158 7 12184877 12185493 GACATCAGGAAGCAGGAGG 60 12185614 12185633 TTCCTCCTCTTCTTCCTCCT 59 NA Rattus norvegicus 81 Nap1l1 ENSRNOG00000003890 ENSRNOT00000005286 1 1 1 80 7 54234040 54234061 GAGCGTATAATCCCAAGATCAG 59 54234099 54234593 ACCTTCTTCATCATAGTCATCG 58 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000022441 2 1 2 120 1 78820432 78821651 GAATGGGATCTGCAGTCCT 59 78821735 78821753 TGTTCACCTCCAGCTTCAG 60 NA InUTR Rattus norvegicus 81 Lingo3 ENSRNOG00000032569 ENSRNOT00000046059 1 1 1 60 7 11746553 11746571 CTTCTGCTTTCTGCTGCTC 59 11746593 11746613 GAAGTTATTCTTGTGCTGTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrnp40 ENSRNOG00000012219 ENSRNOT00000016325 3 1 1 80 5 148608473 148608493 TCCTGTATAAGCTTCCTGGTC 59 148608535 148610186 ATGCTGAGAGGATGATGGG 59 NA Rattus norvegicus 81 Jsrp1 ENSRNOG00000032951 ENSRNOT00000044417 2 1 1 109 7 11771179 11771404 CAAGACTCGAGGGACATCC 60 11772465 11772484 CTTTCTCCGTCTTCTTGAGC 59 NA Rattus norvegicus 81 Usp35 ENSRNOG00000024961 ENSRNOT00000031161 3 1 1 80 1 162298783 162299856 CATCTCCTGCACAGAGGAG 60 162298721 162298739 CCATCCATGAGTTCCAACG 59 NA Rattus norvegicus 81 Rnase13 ENSRNOG00000039500 ENSRNOT00000060539 1 1 1 60 15 28323446 28323464 TACAGCCAACTCTGGTGAC 59 28323404 28323425 AAGATTCGGAAGTTCTTGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acrv1 ENSRNOG00000008508 ENSRNOT00000011309 1 1 1 80 8 39165049 39165897 GGATCTTCCAGAGGAGCAC 60 39165939 39165959 TGAAAGTTGCTGAACAGAAGC 60 NA Rattus norvegicus 81 Lhx1 ENSRNOG00000002812 ENSRNOT00000003799 3 1 1 83 10 71848577 71848598 TGAATGTAAATGCAACCTGACC 60 71846841 71848534 CCGAAACATCGGAAGAAGTC 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 3 2 2 60 2 238696057 238696076 CACCTTTGACAAACACGGAG 60 238696097 238696117 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 3 2 2 84 7 66863070 66881567 CTTCAGCTCCAGAGGTCAG 60 66863004 66863022 AGTCCATCAGTAGCCAGGA 60 NA Rattus norvegicus 81 Olr711 ENSRNOG00000057839 ENSRNOT00000089672 1 1 1 60 3 78555237 78555258 TGTCAAAGCTTGTCTAGTTCAG 59 78555198 78555216 GAAGACCTCAGAACCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr711 ENSRNOG00000057839 ENSRNOT00000089672 3 1 1 60 3 78554935 78554955 CCTTGGACTCAGTGTAATTGG 59 78554895 78554919 GAGGAGGATAAAGACCACTATAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sycp3 ENSRNOG00000005270 ENSRNOT00000007088 1 1 1 80 7 29037192 29038252 CAACAAGAGGAAATACAGAAGC 58 29038293 29038311 CATATCCAGTTCCCACTGC 58 NA Rattus norvegicus 81 LOC100360645 ENSRNOG00000042271 ENSRNOT00000066885 1 1 1 80 10 48881061 48881080 ATGCAGATTCTCGTGAAGAC 58 48881121 48881142 CTCACTCACTTTCATGGTGTC 59 NA Rattus norvegicus 81 P4ha3 ENSRNOG00000017118 ENSRNOT00000046943 3 1 1 80 1 165307982 165308001 GTGGAAGACAGAGGATGAGG 60 165308039 165311102 GAAACATTTCCTACCTGGTAACAG 60 NA Rattus norvegicus 81 Impdh2 ENSRNOG00000031965 ENSRNOT00000047717 1 1 1 80 8 117350991 117351011 GAAGAAGTATCGTGGTATGGG 58 117351051 117351158 TCAGCTTCACTGAAATATCGG 58 NA Rattus norvegicus 81 Impdh2 ENSRNOG00000031965 ENSRNOT00000047717 2 1 1 80 8 117350993 117351012 AGAAGTATCGTGGTATGGGC 59 117351052 117351160 TGTCAGCTTCACTGAAATATCG 59 NA Rattus norvegicus 81 Slc25a17 ENSRNOG00000018920 ENSRNOT00000025758 1 1 1 88 7 122547364 122548921 CATCATCGATGCATTCCACC 60 122547295 122547313 TGAAGACCAACAGCAAGGA 59 NA Rattus norvegicus 81 Cenpf ENSRNOG00000003388 ENSRNOT00000004525 2 1 1 80 13 108160979 108160997 AACCAGACTTACCCAGGAG 58 108158629 108160935 ACTGATGTGACCTTCTCCA 58 NA Rattus norvegicus 81 Olr668 ENSRNOG00000055117 ENSRNOT00000080807 3 1 1 60 3 77661434 77661453 GAGACTCTGTGCAATTCTGG 59 77661393 77661414 TATGATAGAATGCAAGAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2b2 ENSRNOG00000001425 ENSRNOT00000001935 2 1 1 98 12 23494443 23494461 ACAGTGAGGAAGACACAGG 59 23494523 23494629 GCATGTCTGCTTCTGTCAG 59 NA Rattus norvegicus 81 LOC100909423 ENSRNOG00000046510 ENSRNOT00000071070 3 1 1 60 3 158985096 158985114 GATTCAAAGCCTTCAGCAC 57 158985054 158985075 GAACCAAAGAAGACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302,ENSRNOT00000077687 1 2 2 80 7 144081839 144081857 ATAACTTTGGCTGGACCGA 59 144081900 144084639 GCTGCTTATGTCCTCTTCCA 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778,ENSRNOT00000086250 1 2 2 80 20 21978232 21981498 TCACCATATTCAACGAAGCA 58 21978171 21978190 TTATGGAAGATTCCTCTGCG 58 NA Rattus norvegicus 81 Olr321 ENSRNOG00000021065 ENSRNOT00000028599 2 1 1 60 1 228475048 228475067 TAGACATCTGCTTCTCCTCC 58 228475007 228475028 TTCTTTGTTAGAAGGTCCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa10 ENSRNOG00000016470 ENSRNOT00000022089 1 1 1 80 9 99641178 99641196 TCACCTCTGCCTATCTCCA 59 99640417 99641135 ACACCTCGCATATCTCACTC 59 NA Rattus norvegicus 81 Agrp ENSRNOG00000039001 ENSRNOT00000059628 3 1 1 81 19 37526903 37527092 CCAGAGTTCTCAGGTCTAAGTC 60 37526843 37526861 CCAAAGCTTCTGCCTTCTG 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 2 2 2 80 10 86981068 86982671 CATCCCACAGAAAGAACTGG 59 86981007 86981027 GATATCTTCAGGCAAGAGGTC 58 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 2 2 2 133 5 169296481 169300942 GGAGGAAGGAAGAAGAGGAG 59 169294257 169294275 GATTTCCTCCAGCTTCTGC 59 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000048060 ENSRNOT00000075558 2 1 1 60 5 144634225 144634244 TCCAACCAGACAGTAATTCC 57 144634265 144634285 TGCCAGTTCTTATTAGCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017769.1 ENSRNOG00000046681 ENSRNOT00000071566 3 1 1 94 15 30862517 30862681 CTCCTAATGCTCCGAAGGA 59 30862739 30862757 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Alg12 ENSRNOG00000004591 ENSRNOT00000065848 3 1 1 80 7 129806511 129808073 GATTCTTTGCCTAGGGCTG 58 129806449 129806467 CAAAGCACCACTCCTTCTG 59 NA Rattus norvegicus 81 Ccr7 ENSRNOG00000010665 ENSRNOT00000014163 3 1 1 105 10 87067373 87067391 TGACTTCAACTGCCCAGAG 60 87058391 87058409 CTCATCTTGGCAGAAGCAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Xpnpep2 ENSRNOG00000004009 ENSRNOT00000005604 1 1 1 80 X 134965237 134968275 GCAAAGACCAAGTACCCAG 59 134968318 134968337 GACATCAATGAGGTTTCGGT 58 NA Rattus norvegicus 81 Tpd52l3 ENSRNOG00000042441 ENSRNOT00000066891 3 1 1 60 1 248195967 248195985 AGATGCCATGACAGAGACC 59 248196007 248196027 ATCTGGTTCTGAAGCTAGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnna2 ENSRNOG00000006003 ENSRNOT00000007971 1 1 1 80 4 107964723 107997087 TTCAGAAACAGTGATGCCA 57 107964661 107964679 AATGGTTGAGGGACATTGG 58 NA Rattus norvegicus 81 Chrm3 ENSRNOG00000049410 ENSRNOT00000075651 3 1 1 60 17 63992845 63992864 AGCTTCCCATCCAGTTAGAG 59 63992804 63992822 GAGGAGTTGGTGTCAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685963 ENSRNOG00000048701 ENSRNOT00000044141 1 1 1 60 3 164002576 164002594 TAAAGTTCAAGGTCCGCTG 58 164002616 164002636 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691215 ENSRNOG00000028189 ENSRNOT00000029193 2 1 1 80 X 125315026 125315936 CAGACGTAAGGGCAATCAG 58 125315977 125315998 CTTTCACTAACTCATCTCCAGC 59 NA Rattus norvegicus 81 Dis3 ENSRNOG00000009125 ENSRNOT00000037588 3 1 1 80 15 83469383 83469550 CTCCTATCAGAAGATATGCAGAC 58 83469325 83469346 ACTCTGGATAAGTACAATCAGC 58 NA Rattus norvegicus 81 Capn7 ENSRNOG00000019273 ENSRNOT00000026323 2 1 1 80 16 7470565 7470585 GTTGTAGCAGTTTCCATAGCG 60 7470624 7470730 AAATCCACACCTATAGTCACCA 59 NA Rattus norvegicus 81 Aprt ENSRNOG00000014405 ENSRNOT00000064180 1 1 1 80 19 55387614 55387827 CTAGAGTATGGGAAGGCTGAG 59 55387554 55387574 GAGATCATCCACAATGACCAC 59 NA Rattus norvegicus 81 Enkur ENSRNOG00000018631 ENSRNOT00000025140 1 1 1 80 17 88095193 88095216 GCACTTCCGAGAGTATTTATAACC 60 88086659 88095159 TAAACAGTGATGAGTACCTAGGAC 60 NA Rattus norvegicus 81 Stard3 ENSRNOG00000042044 ENSRNOT00000064190 3 1 1 80 10 86332986 86333120 TTCATCTTGAAGACCTTCCTG 58 86333162 86333180 TAGTACCATCCTCTCAGGC 58 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032,ENSRNOT00000003638 2 2 2 80 18 309347 309365 AGCAGAGTGGAGAAGATCG 59 308100 309303 GTTCCTCATGTCCTTGCAC 59 NA Rattus norvegicus 81 AABR07053304.1 ENSRNOG00000050529 ENSRNOT00000042764 2 1 1 61 3 98695652 98695673 AATTCGTCCTATTAGCTTCCAC 58 98695695 98695713 ACAGGTGAACTCGGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thrap3 ENSRNOG00000009977 ENSRNOT00000013570 2 1 1 80 5 144181672 144185185 ATCAAAGAAGCAGAAGAAGCAC 60 144181613 144181632 TAGGAGTGAGATGACTGGGA 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671,ENSRNOT00000078956 2 2 2 80 4 100769457 100779741 TCAACAGAAGTGATTTGTCCC 59 100769397 100769416 ATGAGCTGCAAAGTCATCTG 59 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 3 2 4 66 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139589 81143903 TAGATTCTTGCCTCCCACTG 59 NA DesignRelaxed Rattus norvegicus 81 Usp24 ENSRNOG00000005802 ENSRNOT00000029228 2 1 1 80 5 125994029 125996073 CAAGGAGTTTGATTACCTCCC 58 125996115 125996133 CAAGTAGCACCACCATTCC 59 NA Rattus norvegicus 81 Ankrd29 ENSRNOG00000046744 ENSRNOT00000073811 1 1 1 60 18 3676134 3676154 ATGAACATATACTGCACCTCC 58 3676094 3676113 GATCCGAGTTCATTCTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273,ENSRNOT00000004078 3 2 2 80 13 50120949 50120967 CCAAGAAGGAGAAGTCGGT 59 50121010 50123839 TAGACATGATCAGACCTGCC 59 NA Rattus norvegicus 81 Styxl1 ENSRNOG00000023366 ENSRNOT00000046343 2 1 1 80 12 23968601 23974930 ACGACTCTGAACTCTTACCT 58 23974973 23974991 GGATATAGACAGGTTGGCG 58 NA Rattus norvegicus 81 Rpl7a ENSRNOG00000047737 ENSRNOT00000044551 1 1 1 88 3 5460961 5460979 ATCATCAAGGGAAAGGCCA 59 5461031 5461262 TTGTCTTCCGAGTTCACCT 59 NA Rattus norvegicus 81 Gpc1 ENSRNOG00000049437 ENSRNOT00000074395 2 1 1 84 9 100023098 100023116 TTGGCAGTGTGCATATGTG 59 100023164 100023306 CCCTGGATGACCTTAGCTG 60 NA Rattus norvegicus 81 Olr1631 ENSRNOG00000047042 ENSRNOT00000041030 3 1 1 60 15 27485163 27485184 CATTCTGGTATCATCATGCTGG 59 27485124 27485142 GGAGAAGACAGGGATTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bricd5 ENSRNOG00000009611 ENSRNOT00000012794 2 1 1 104 10 13840157 13840175 CACTCTAGTGGATGTGGCC 60 13840243 13840333 CAGATGTAGCCACTTTGCC 59 NA Rattus norvegicus 81 Olr1576 ENSRNOG00000009141 ENSRNOT00000012103 1 1 1 60 13 91482156 91482174 CCAGAAGAAAGCCTTTGCC 59 91482198 91482216 GCCGTAGTGAACAATGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361642 ENSRNOG00000029978 ENSRNOT00000050333 2 1 1 60 1 168830703 168830724 GTCTCATTCTCATCAAATGCAG 58 168830745 168830763 TATGAGTGCGACACAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clcnka ENSRNOG00000052368 ENSRNOT00000089184 1 1 1 80 5 159942842 159942861 CCTGAGCGTGATGATTTCTG 59 159942699 159942800 ATTTCCTTGGCCTTGTTCTC 59 NA Rattus norvegicus 81 AC117012.1 ENSRNOG00000056683 ENSRNOT00000088803 2 1 1 60 3 76862606 76862625 TATGACGCAGATCTTTGCAG 59 76862645 76862666 GAGAATAAGCACAAAGATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbscr16 ENSRNOG00000001483 ENSRNOT00000002032 1 1 1 80 12 25562389 25565880 ACCATAAGATTTCCTCTGCTG 58 25565921 25565940 CCCAGACTTTCGTAACATCC 58 NA Rattus norvegicus 81 Ndufa4 ENSRNOG00000005512 ENSRNOT00000007567 3 1 1 91 4 38239631 38240700 GAAACATCCCAGCTTGATCC 59 38239559 38239577 GATTGAACAATGCCAAGCG 58 NA Rattus norvegicus 81 Tsc22d3 ENSRNOG00000056135 ENSRNOT00000085118 3 1 1 81 X 111887633 111887653 TGCACAATTTCTCCATCTCCT 60 111886886 111887590 CCAGAGGCACTGTTATCCA 59 NA Rattus norvegicus 81 Olr851 ENSRNOG00000052071 ENSRNOT00000082758 1 1 1 60 5 69577586 69577604 AGTGATGACTCCCATGCTC 59 69577544 69577563 AGCCTTCACATCCTTATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000041527 1 1 2 80 1 72785134 72785573 TTTCAGACCAATATCCACAGGT 60 72785611 72785632 GAATCCAGAGGAGGAAGTAGAG 59 NA Rattus norvegicus 81 Mir490 ENSRNOG00000036272 ENSRNOT00000054395 3 1 1 60 4 63342945 63342966 GAAAGTTCATTGTTCGACACCA 60 63342982 63343005 GGTTGGTGTATATCTAAACGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oxa1l ENSRNOG00000009713 ENSRNOT00000013246 1 1 1 80 15 33007304 33010511 CATTGCCACGTGTACTGTC 59 33010555 33010573 TGGATCTTGGCTGCTTCTC 60 NA Rattus norvegicus 81 Abca17 ENSRNOG00000039656 ENSRNOT00000060818 2 1 1 80 10 13679837 13679856 GATCACAGTTCTTCTGGGAC 58 13675976 13679797 TTTGAAGGAGGAATAAGACCTG 58 NA Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 1 2 2 80 10 88264443 88264787 TGGAAGAGAAAGAACGGGA 58 88264381 88264402 CCTCCATCAGAACACTATTCTG 58 NA Rattus norvegicus 81 Avil ENSRNOG00000050419 ENSRNOT00000073237 2 1 1 80 7 70300017 70300036 ACGTATGGAAAGGCAAAGGA 60 70300075 70300789 CCTTCATCTTGATGAAATCCAGG 60 NA Rattus norvegicus 81 AABR07017745.1 ENSRNOG00000048707 ENSRNOT00000071740 2 1 1 75 15 30570510 30570528 TTACTCCTAGGCCTTCACC 58 30570705 30570723 GACTTCGTTTCACCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046144 ENSRNOT00000072019 2 1 1 153 17 43616408 43616426 CTACCAGAAGTCCACCGAG 59 43616542 43616561 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017870.1 ENSRNOG00000045525 ENSRNOT00000060310 3 1 1 80 15 32076336 32076573 CAATTAAATTGGGTGAGCAGC 59 32076614 32076633 AGAAGCTATGGATCCCTCTG 58 NA Rattus norvegicus 81 Olr1612 ENSRNOG00000012545 ENSRNOT00000016727 3 1 1 60 15 27139916 27139936 CTTGTTATTCCCACATCACCA 58 27139876 27139897 GCATAAATGTAGATGGATGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr17 ENSRNOG00000057764 ENSRNOT00000077975 2 1 1 60 1 149682537 149682555 CAATCGGCAAAGTGGTCTC 59 149682495 149682515 ATGAGAGGGTTGACTAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim50 ENSRNOG00000022483 ENSRNOT00000032250 2 1 1 81 12 24353098 24358499 CGGATTATTAATGAGTCTGACGTC 60 24353040 24353058 TCTCTTCATCCACCAGGTG 59 NA Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 3 2 2 125 18 2425169 2425191 GGGCTTTATATGAAACTCCATGG 60 2426447 2426552 AACAGAGCTGTTACCGGAG 59 NA Rattus norvegicus 81 Brms1 ENSRNOG00000020117 ENSRNOT00000027258 2 1 1 80 1 220330337 220330355 GAGGCAGATGAGAGTGAGG 59 220330398 220330522 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 Tas2r138 ENSRNOG00000026225 ENSRNOT00000031345 3 1 1 60 4 68831402 68831426 TATCAATACCCTTACTGGTACTGTG 60 68831366 68831387 ATCCCTATACAGACCATCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddit4 ENSRNOG00000057078 ENSRNOT00000085026 1 1 1 102 20 29510954 29510972 CAGAGAAGAGGGCCTTGAC 60 29510620 29510889 GTATGAGGAGTCTTCCTCCG 59 NA Rattus norvegicus 81 LOC100912759 ENSRNOG00000049264 ENSRNOT00000071062 1 1 1 60 13 100189362 100189383 TATCAGCAAAGAACAACAGTGG 59 100189323 100189342 CAGTGTCATCTCAATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1654 ENSRNOG00000054976 ENSRNOT00000085156 2 1 1 60 17 44852576 44852594 GATCATCACACCCATGCTG 59 44852534 44852553 TCCCTTTACCTCTTCGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 2 1 1 129 17 78739933 78740509 ATGAATCCTCAGGTGCAGG 60 78740602 78740620 CTGGATTCCCTCGACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Fsip1 ENSRNOG00000005888 ENSRNOT00000007808 2 1 1 80 3 109999413 110001849 AACATTGAGTTGGCCAAGAG 59 109999352 109999371 TTTCAGGAGCTCATCCAGAC 60 NA Rattus norvegicus 81 Gas2l3 ENSRNOG00000025198 ENSRNOT00000033123 3 1 1 80 7 29978687 29980436 GGCTTACTAGGTATTGACATTAAGG 59 29978631 29978649 ATTGATTAGCTGGCACAGC 59 NA Rattus norvegicus 81 Fas ENSRNOG00000019142 ENSRNOT00000025928 1 1 1 80 1 252617503 252617521 GTACACGGACAGGAAACAC 59 252617563 252618606 GTTTCCACTTCTAAACCATGC 58 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595,ENSRNOT00000089473 3 2 2 81 6 93513237 93513256 GAAGATCAAACAGCAGGAGG 59 93513298 93515541 GCTTTCAGTTTCTTCCCTCTC 59 NA Rattus norvegicus 81 Olr281 ENSRNOG00000049832 ENSRNOT00000040345 3 1 1 60 1 173468786 173468808 AATCCACTAATCTACAGCCTGAG 60 173468748 173468767 GCCATAATTTCAACACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Manbal ENSRNOG00000031453 ENSRNOT00000047047 1 1 1 87 3 153491174 153502915 TACCGGAGAACTTGGTTCTG 60 153502965 153502983 AGAAATCCAGGTCAGAGGC 59 NA InUTR Rattus norvegicus 81 Zfp612 ENSRNOG00000016971 ENSRNOT00000022757 2 1 1 80 19 41565359 41565378 AAGGAGAGGATCTGGAAAGC 59 41561232 41565319 GGATAGCAGTACATTCAGTCCA 60 NA Rattus norvegicus 81 Phlda1 ENSRNOG00000004019 ENSRNOT00000005361 1 1 1 150 7 54248591 54248609 TCATCCACACCAACTCCAG 59 54249117 54249135 ATGCACTCTTCCCACTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Abhd4 ENSRNOG00000009244 ENSRNOT00000012837 3 1 1 81 15 32904918 32905481 GAGACATGGAGATCGAGGG 59 32905526 32905544 CAGATCTCCTCCACCACAG 59 NA Rattus norvegicus 81 Ednrb ENSRNOG00000010997 ENSRNOT00000014747 1 1 1 80 15 88007515 88010318 CTGCTTTAAGTCGTGTTTGTG 58 88007455 88007474 TTCAAGCAGGATTGCTTCTC 59 NA Rattus norvegicus 81 Zbtb26 ENSRNOG00000009346 ENSRNOT00000012433 1 1 1 132 3 21697893 21697911 CTTTGGCTCAGGTTGTCTG 59 21689985 21690006 AAGGAGATCTGATCTTTCAGAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdpr ENSRNOG00000022593 ENSRNOT00000038452 2 1 1 80 19 43115063 43115082 ATCCGGGTGATGAGTATGAC 59 43111669 43115022 GTAGACATGCAGAGCATACTC 58 NA Rattus norvegicus 81 Neurog1 ENSRNOG00000022405 ENSRNOT00000015916 3 1 1 69 17 9155536 9155554 AAGACTTCACCTATGGCCC 59 9155586 9155605 GTATGGAGGAGGTCTTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr850 ENSRNOG00000057655 ENSRNOT00000079848 1 1 1 60 5 69516492 69516511 TCTCTATGTATGCGAAACCC 57 69516451 69516471 GAAATTCCGAACTTGTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r67 ENSRNOG00000052591 ENSRNOT00000073670 3 1 1 60 4 87353520 87353539 CTCTATCTGCATCACCTGTC 58 87353560 87353580 GGTACTGGGACTGATAGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h3a ENSRNOG00000050478 ENSRNOT00000074292 2 1 1 82 17 43626288 43626306 ACTTCAAGACCGACCTTCG 60 43626224 43626243 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp46 ENSRNOG00000049975 ENSRNOT00000072132 2 1 1 60 5 154651239 154651257 GACTGTAACGAGTGTGGGA 59 154651281 154651299 TCGTCTGGTGCTGAATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo4 ENSRNOG00000019553 ENSRNOT00000026552 3 1 1 80 15 34306829 34306961 CTGTGTAAGACGAAACAGAGC 59 34306769 34306789 TAGACCCTGAATGGATTCTGC 60 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 2 2 2 80 6 93609533 93618142 CTTCTGACATTGTCCCAGG 58 93618185 93618204 TCATGTCTGAGTTCACAGGA 58 NA Rattus norvegicus 81 Aadacl4 ENSRNOG00000037030 ENSRNOT00000034394 1 1 1 84 5 162681757 162681775 CAGTGTCCTCAGAACTCCG 60 162680242 162681711 AGATTGTGGTAACTGTCCAGG 60 NA Rattus norvegicus 81 Olr844 ENSRNOG00000049850 ENSRNOT00000074390 3 1 1 60 5 69306049 69306067 TTACACCGATGCTGAATCC 58 69306091 69306109 ATGGCAGCTTTAACATCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsl ENSRNOG00000018566 ENSRNOT00000025462 2 1 1 80 17 1876235 1876466 CCCTATGAAGCAAAGGATGG 58 1876174 1876193 AGGGATATCCACAAACCCTG 59 NA Rattus norvegicus 81 Klf15 ENSRNOG00000017808 ENSRNOT00000024011 3 1 1 118 4 122369902 122369920 GATGTACACCAAGAGCAGC 59 122376596 122376614 GTGACAACTCATCTGAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Fkbp7 ENSRNOG00000011758 ENSRNOT00000015722 3 1 1 81 3 63522813 63527013 CTCCAAGGCCGAGATAGAG 59 63522750 63522770 CGCCTTCTGATATGACTTGTC 59 NA Rattus norvegicus 81 Rere ENSRNOG00000017940 ENSRNOT00000024443 1 1 1 80 5 167518831 167518849 CAGTCATCAAGAACCGGGA 59 167518893 167526184 TGTTGCACTTCCCTCTCAG 60 NA Rattus norvegicus 81 Klrg1 ENSRNOG00000014918 ENSRNOT00000020094 1 1 1 80 4 155046867 155046887 CTCTAGTCTGAAGTTCTGTGC 58 155042057 155046825 TCCTGGAACAGGTTCACTC 59 NA Rattus norvegicus 81 Eed ENSRNOG00000017509 ENSRNOT00000024082 3 1 1 80 1 154212674 154215814 GAGACGAGAATGACGATGC 59 154212612 154212632 CATTTGGTGTATTTGTGGGTG 58 NA Rattus norvegicus 81 Nps ENSRNOG00000036653 ENSRNOT00000054896 2 1 1 60 1 207508583 207508602 ACGTGATTTGGAGTTATCCG 58 207512022 207512041 AGAAAGTAATCAGGCTTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 1 2 2 80 9 85563580 85566359 CAGTAGTGACAACTGCAATCC 59 85563520 85563538 GGATGCAGAACAGGAAAGG 59 NA Rattus norvegicus 81 Eaf1 ENSRNOG00000019559 ENSRNOT00000026525 3 1 1 80 16 7589207 7591328 CCATTCGCTATGACTTTAAGC 58 7591370 7591388 TGACTTCATCTCCTTTGCC 58 NA Rattus norvegicus 81 Med15 ENSRNOG00000001877 ENSRNOT00000002568 3 1 1 81 11 87604410 87628448 CTGGTCAGCCAAATTGAGG 59 87604347 87604367 ACACATGACTCTCCATATCCT 58 NA Rattus norvegicus 81 Slc26a6 ENSRNOG00000020450 ENSRNOT00000027762 1 1 1 81 8 117654097 117654117 CTCAAGGGTATGATGAAGCAG 59 117654160 117654259 TCACCAGCCAGATTAGCAG 60 NA Rattus norvegicus 81 Chd4 ENSRNOG00000018309 ENSRNOT00000055970 2 1 1 80 4 157638809 157638932 GGCATTATAAACCACGGCT 58 157638975 157638994 CTTGAAAGGCTCATTGAGGA 58 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 2 2 2 81 19 56784325 56787161 GGAACTTTCTCACTGATTCTGAC 60 56784266 56784285 AGGTGGAGGTAGACAAAGAG 59 NA Rattus norvegicus 81 Fam50b ENSRNOG00000017083 ENSRNOT00000022929 3 1 1 60 17 30864375 30864393 GAGAAAGACGAGTCACACG 58 30864333 30864353 GCTTGTTCTTCTCATACCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr250 ENSRNOG00000028802 ENSRNOT00000041144 2 1 1 60 1 172349223 172349241 CAGTGTTCATCATAGCCGT 58 172349263 172349283 GAGTGTATCTTCAGGATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937,ENSRNOT00000077245 2 2 2 80 4 155535085 155537201 ATAAGCAGGTGAAGACCTGG 60 155537242 155537262 TGCTAGTCTTCAACCATTGGT 60 NA Rattus norvegicus 81 Vom1r68 ENSRNOG00000051513 ENSRNOT00000074184 3 1 1 60 4 87441264 87441282 CTATCTGTACCACCTGCCT 58 87441305 87441324 GAGGTATTGGGACTGATCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf151 ENSRNOG00000014127 ENSRNOT00000018964 2 1 1 121 10 14084380 14084793 ACAAGTCAAGTGCAAGAACG 59 14084278 14084296 CAGTGCAACCCTCATTTGG 59 NA Rattus norvegicus 81 Olr1 ENSRNOG00000056219 ENSRNOT00000086390 2 1 1 80 4 163255215 163257660 TACAGCAGACACAGTTACTCC 60 163255155 163255175 CCAGGATATGATCCTGCTGAG 60 NA Rattus norvegicus 81 Pcdhb14 ENSRNOG00000020059 ENSRNOT00000027168 1 1 1 60 18 30527818 30527837 GACAGACAGAGGTTCTTTGG 58 30527860 30527878 CTCCCTTAAACTCAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cinp ENSRNOG00000008035 ENSRNOT00000010598 2 1 1 81 6 135297057 135300074 AGTCACCTTGTTGAGTAAAGAG 58 135296997 135297017 CAGGTTTGTCTTCTCTTCCTC 58 NA Rattus norvegicus 81 Lbx2 ENSRNOG00000052374 ENSRNOT00000086359 3 1 1 171 4 113918893 113918911 ACTTTCCAGGGCCATTCTC 60 113920114 113920134 CCAAGTACTTCTGGAAGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Olr407 ENSRNOG00000054399 ENSRNOT00000082831 2 1 1 60 3 16242056 16242076 CTCTTTGCTCAACTGACTCAC 59 16242097 16242116 ACAGGTCACAGAAGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp6 ENSRNOG00000053181 ENSRNOT00000083570 2 1 1 80 7 141259930 141260207 CATCTCATTGGGATCTACTTCAC 59 141260246 141260265 AAACTTCCCAACAATGACCG 59 NA Rattus norvegicus 81 Slc9a3r2 ENSRNOG00000002997 ENSRNOT00000004172 1 1 1 81 10 14006005 14006023 ATACATCCGCTCTGTGGAC 59 14005721 14005960 CCCATTCACCTCAATGAGC 59 NA Rattus norvegicus 81 Gpx1 ENSRNOG00000048812 ENSRNOT00000073247 2 1 1 85 8 117117666 117117685 GAATGATCTGCAGAAGCGTC 60 117117733 117117968 TGCCATTCTCCTGATGTCC 60 NA Rattus norvegicus 81 Arpc5l ENSRNOG00000014317 ENSRNOT00000019405 1 1 1 98 3 23306162 23306709 CAAGCTGTGAAGGAACGAG 59 23306771 23306789 ATTCCTGTCCAGTGACTGC 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 2 1 2 188 4 161727351 161728158 GGGTTAGGAAAGAGGGTCC 59 161728499 161728767 GTCAATGCAGCACTTGAGG 60 NA Rattus norvegicus 81 Smc1b ENSRNOG00000032570 ENSRNOT00000044883 3 1 1 80 7 126017017 126017037 AACTACAGTGGGAACAGAAGG 60 126012836 126016978 TTAGATTTCCCTGAGTGTCTCC 59 NA Rattus norvegicus 81 Cela1 ENSRNOG00000004725 ENSRNOT00000006351 3 1 1 80 7 142306286 142306305 ATGGGCTGTAATGTCTCCAG 60 142305630 142306245 GGCAATGACATTGTTCATCCA 60 NA Rattus norvegicus 81 Gab2 ENSRNOG00000011882 ENSRNOT00000016361 1 1 1 80 1 162276795 162276816 AAACAACACTGTCATCGATGAG 59 162276854 162277445 GAGTTAAAGGTGTGGTTGATCC 59 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000013241 ENSRNOT00000054729 1 1 1 80 1 258134113 258134131 AAACCACAAGCACTACCCT 59 258134173 258135325 TCTCTTCCTGGACTTTAGCTG 59 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000013241 ENSRNOT00000054729 2 1 1 80 1 258134106 258134125 GGATCAGAAACCACAAGCAC 60 258134167 258135318 CTGGACTTTAGCTGTGACCT 60 NA Rattus norvegicus 81 Dph3 ENSRNOG00000019727 ENSRNOT00000026742 1 1 1 80 16 8207315 8207336 TTTCAATATGACGAGGACACAG 59 8206849 8207277 CAAATCTTCCTTGGTGATGGAG 59 NA Rattus norvegicus 81 Mki67 ENSRNOG00000028137 ENSRNOT00000038176 3 1 1 80 1 208015323 208015341 CCCGAGAAAGTCACTTGGA 59 208012009 208012450 TGATCTTTCCCATCAGGGTC 59 NA Rattus norvegicus 81 AABR07018165.1 ENSRNOG00000013433 ENSRNOT00000017939 1 1 1 60 15 44442715 44442735 ACACAGTCAACAGAACAACAG 59 44442675 44442696 ATGTCCCTTAGAATGGAAACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qprt ENSRNOG00000016980 ENSRNOT00000023080 3 1 1 132 1 198544939 198545192 GTATGGAGAAGGCAGTGCT 60 198544825 198544843 AAGTTGTCCAGCATGACCA 60 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000048542 ENSRNOT00000073741 2 1 1 80 15 35264488 35264712 CTATTAAAGTTGGAGAGTAAGGCC 59 35264431 35264449 CTTCACCATGTCATTGGGC 59 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000060258 1 1 2 105 3 11825516 11825534 CAGCCTGAGACTTCTGTCC 60 11825602 11825637 TAAATACCTGGGTCCCAAGG 59 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000060258 2 1 2 113 3 11825508 11825526 ACCTATTGCAGCCTGAGAC 60 11825602 11825637 TAAATACCTGGGTCCCAAGG 59 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681,ENSRNOT00000087680 3 2 2 80 1 276296242 276296832 CCAGTACAGCCTAACAATAGAG 58 276295356 276295376 TCTTCTACGACCTTATAGCGG 59 NA Rattus norvegicus 81 Siglec15 ENSRNOG00000033588 ENSRNOT00000045278 3 1 1 62 18 74409252 74417291 CTCCAGATGGGATCACCTG 59 74409208 74409228 CTCTGTGTTGAGAGCATTTCC 59 NA DesignRelaxed Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 2 1 1 61 1 163797995 163805185 CTGGCATTGTCCAAGACTC 59 163805210 163805228 AGCTGTTTACAGTGTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000016881 3 1 2 81 1 267505403 267506312 GCTGAGGAAGAAGGAAATCAG 59 267506354 267506373 GAGGAATGTCAGGTGAAGTG 58 NA Rattus norvegicus 81 Gins3 ENSRNOG00000011863 ENSRNOT00000015795 3 1 1 69 19 9839576 9839595 ATATCTCCCAGTCACTGCTG 59 9836914 9836932 GAATTCTGGGAGGAGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 1 2 2 80 15 34297862 34297882 CATATCCTAGAGCACCTACAC 57 34297922 34298324 AAGAAGCAAGCTAGGTAAGTC 58 NA Rattus norvegicus 81 Mccc1 ENSRNOG00000013293 ENSRNOT00000018942 1 1 1 80 2 122671183 122671202 GAAGTAAGAAGGAGGCTGGG 60 122570331 122671141 GAATTCCACAGTTCCTGCTC 59 NA Rattus norvegicus 81 LOC102551660 ENSRNOG00000019873 ENSRNOT00000026938 2 1 1 80 1 225134005 225134023 TGGATGATTCCAACGAGCA 59 225134063 225135516 CATTTGTACTCTTGATCTCAGCC 60 NA Rattus norvegicus 81 Polr2c ENSRNOG00000015720 ENSRNOT00000021639 3 1 1 80 19 10581736 10581754 TTATCGAGAACACGGACCT 58 10578894 10581592 AGTCAATGGCTATTATGGGC 58 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471,ENSRNOT00000084420 1 2 2 80 20 34899948 34903658 TTTGTGTTTCAGGCTGATGC 60 34903697 34903719 GGTAATCAGTACAACTGTTACCC 59 NA Rattus norvegicus 81 Dpy19l3 ENSRNOG00000021573 ENSRNOT00000039115 2 1 1 80 1 92011781 92019491 ACTGGATTAACTCCAATACACC 58 92011722 92011740 CTGTACACAGCTTGACTCC 58 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173,ENSRNOT00000011851 2 2 2 80 4 57410692 57410710 GCTGATGCTTCAGAACTGC 60 57410753 57412609 TTGTTCCACCTCTCCATCAG 60 NA Rattus norvegicus 81 Gatad1 ENSRNOG00000008613 ENSRNOT00000067376 2 1 1 86 4 27654891 27656990 TATAATAGGGCCAGAGGAAGAC 59 27657032 27657055 CTTGACTTGAAATACTCAGAAGGG 60 NA Rattus norvegicus 81 H3f3b ENSRNOG00000006532 ENSRNOT00000050223 2 1 1 144 10 104575378 104575775 CTTCAGCTTTGGGTGAGAG 58 104575252 104575270 GCGATGAGGTTTCTTCACC 59 NA InUTR Rattus norvegicus 81 Polr2g ENSRNOG00000019439 ENSRNOT00000026313 3 1 1 80 1 224992367 224992386 CCATCCCTTCAGAGATGGAG 59 224992223 224992328 GCTGAATTACAATGTCCTCATCC 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984,ENSRNOT00000043079,ENSRNOT00000006393 1 4 4 80 7 78589130 78589148 CAGCGATTTCCTTGATGGT 58 78589192 78589522 TGAATGTCACCCATTGCAG 59 NA Rattus norvegicus 81 Acp2 ENSRNOG00000013594 ENSRNOT00000018620 3 1 1 80 3 80024687 80024786 CAGAATGCACAATTTCTGGAC 58 80024826 80024846 ATACACATTCCAGATGGTCTC 57 NA Rattus norvegicus 81 Urb2 ENSRNOG00000026853 ENSRNOT00000036042 1 1 1 80 19 56820667 56823673 CAGAAAGACCAAGGGAGCA 60 56823714 56823735 AATGTGGCTATACATCCTCTCC 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 1 5 5 80 6 80269530 80270982 AAGCACATGATAATTGGCTGG 59 80271024 80271042 GTCTGTTGTGGGCATTCTC 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 2 2 2 61 15 34342123 34342143 CTGACTGGAAAGGAGATTGAG 58 34341773 34342100 TCCTTGATTCGTTCCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 3 2 2 80 X 10404716 10405255 GGAAATACAGATGCTGGCC 59 10404654 10404675 TTCTCTGAAGTAGACCCAACTC 59 NA Rattus norvegicus 81 Olr690 ENSRNOG00000047252 ENSRNOT00000073165 2 1 1 60 3 78065965 78065984 TTGTCTCTAGCCCTACACTG 59 78065924 78065942 AAAGACAGGAAAGCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r11 ENSRNOG00000056833 ENSRNOT00000078071 3 1 1 60 1 60517235 60517253 CCCTTCTCCAAGAAGCTCC 60 60517193 60517214 GCAAACAAGAATCAAGATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anapc4 ENSRNOG00000004130 ENSRNOT00000006093 1 1 1 80 14 60473072 60473090 CTGCTGGAAAGCATGAAGG 59 60472611 60473030 CCGGAGGTTTGAACTTAACAC 60 NA Rattus norvegicus 81 Shoc2 ENSRNOG00000015339 ENSRNOT00000020580 2 1 1 80 1 274718471 274718489 GAACTGCACCCAGATAACC 58 274718531 274731577 CTGGACAGGTTTCCTATTGTG 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633,ENSRNOT00000044147 3 2 2 80 4 181417863 181417881 CTCCCTCAGTACAAGACGC 60 181417925 181421536 CAGGAGGTCATCCACAGTC 60 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000079470 3 1 3 82 8 115142551 115143896 TCCTTCTCTTCATCCAGCTG 59 115142250 115142269 TATTCTGCAGCTGTAGGTCC 59 NA Rattus norvegicus 81 Mir181d ENSRNOG00000036417 ENSRNOT00000054529 2 1 1 64 19 25290101 25290119 TTCATTGTTGTCGGTGGGT 60 25290055 25290073 GCCACAGTGACATTCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdcp2 ENSRNOG00000009221 ENSRNOT00000012427 2 1 1 80 5 126698652 126703612 CTATGGAAGGTGTCAAGTGTG 59 126703651 126703672 GATACAGACTTGGGAAGTTTGG 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000004236,ENSRNOT00000085582 1 3 6 80 10 53714380 53715762 CCTGGATGATCTACACCTACTC 59 53715803 53715821 CCTCAGGGTTGTACACTGG 60 NA Rattus norvegicus 81 Mir3571 ENSRNOG00000035523 ENSRNOT00000053646 3 1 1 61 18 2054964 2054988 CCATAGCATTCTATGTTCATATGGG 60 2055006 2055025 CAATAGTGCCTACTCAGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700,ENSRNOT00000079004 2 3 3 80 2 123350947 123350965 TATGGTGGTCGTTCTGCTC 60 123348819 123350905 TCTACATCACTGTCATCCTCG 59 NA Rattus norvegicus 81 Tex22 ENSRNOG00000028158 ENSRNOT00000034995 2 1 1 87 6 137889618 137890021 GAGCTCAGCCCTAGATGTG 60 137890072 137890090 ACTGTAGCGTCTTCCTCTG 59 NA InUTR Rattus norvegicus 81 Mep1b ENSRNOG00000049345 ENSRNOT00000074116 3 1 1 80 18 15074398 15074416 GATTGGCCAACGAATGGAC 60 15073817 15074356 AAACTCAAGGAAGAAGTGCAG 59 NA Rattus norvegicus 81 Celsr1 ENSRNOG00000021285 ENSRNOT00000036025 2 1 1 80 7 126857696 126910418 GTCTGTGTCAGATGGTGTC 58 126857634 126857652 TTGGTCAGCATGTCATCTG 58 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 2 2 2 135 9 92511320 92511338 TATTTCTCCCTCATGCCCG 59 92507133 92511221 TGTCGAAGATCCATCCTGC 60 NA Rattus norvegicus 81 LOC100910562 ENSRNOG00000045815 ENSRNOT00000073285 1 1 1 60 11 23057866 23057888 CTCATGTCCTAGAAATGATGTCC 59 23057828 23057848 ACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 2 4 7 89 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714911 83716150 CATGTCATAGAGCTGCCCT 59 NA Rattus norvegicus 81 Tsen34 ENSRNOG00000059572 ENSRNOT00000084846 3 1 1 80 1 64097882 64097901 GAAGTGAAGCTACCCAAGGA 60 64097689 64097840 GGGATGAAGAATCTGCTCCT 59 NA Rattus norvegicus 81 Olr357 ENSRNOG00000053559 ENSRNOT00000073539 3 1 1 60 1 230057136 230057156 CTTCTTGCTGGATCATACGTC 59 230057176 230057196 AAGTGAAAGCAACATGGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vmp1 ENSRNOG00000003967 ENSRNOT00000005658 3 1 1 80 10 73963170 73980855 TTTCTGCTTTATCTGGGCC 58 73963108 73963126 TGGCTCAGGGAAATTAACC 57 NA Rattus norvegicus 81 Pcbd1 ENSRNOG00000000566 ENSRNOT00000000687 1 1 1 80 20 30694401 30695946 TTTAACGTGTACAACAAGGTCC 59 30695987 30696005 GGCCAGGTTTATATCCCGT 59 NA Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 1 2 2 80 10 110527297 110527317 CCAAGTTTCAGGTTCCTTCAG 59 110526899 110527256 CTGCACAGATAGCAATGACC 59 NA Rattus norvegicus 81 Rspry1 ENSRNOG00000060931 ENSRNOT00000090217 3 1 1 80 19 10806012 10806030 CATTGGAAGATCCACTGGG 58 10804155 10805969 TCTGGAGTGCATCTTTAGTG 57 NA Rattus norvegicus 81 AABR07059072.1 ENSRNOG00000050173 ENSRNOT00000070847 2 1 1 82 4 3122792 3122810 CGTTCAGCTGCTTATGCTG 60 3122726 3122748 TAAGAGACCTGAACAACCCTC 59 NA Rattus norvegicus 81 Hmgb3 ENSRNOG00000011096 ENSRNOT00000015044 3 1 1 85 14 51460497 51460752 AGAGGTGGAAGACGATGTC 59 51460430 51460448 CATTTCACGATCGTAGCGT 58 NA Rattus norvegicus 81 Cpn2 ENSRNOG00000024384 ENSRNOT00000048746 2 1 1 87 11 74057402 74057420 TCTCTTCTGTTTCCGAGGA 58 74065289 74065307 CAACATAACCAGGCTCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Olr271 ENSRNOG00000034061 ENSRNOT00000048478 3 1 1 60 1 172931697 172931718 ATGCCCAAATCTAACTACTCCA 59 172931658 172931677 CCACCATGTAGAACACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bola2 ENSRNOG00000015333 ENSRNOT00000020553 2 1 1 62 8 60098389 60098407 TAAGTTCGAGGGAAAGCCA 59 60098345 60098363 TCTTCAGCTAAGCACTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr724 ENSRNOG00000006706 ENSRNOT00000008750 1 1 1 60 3 78790388 78790407 CATGGCTCAAGTCTATGCAG 59 78790347 78790367 CACTGTCAACAGGATGATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr724 ENSRNOG00000006706 ENSRNOT00000008750 2 1 1 60 3 78790535 78790553 GTCATCAACAGTCAGGCTC 58 78790493 78790511 TCAAGGAGAGGTGACTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000068197,ENSRNOT00000077146 3 2 2 80 7 12505608 12505627 CAAGTATGATGCAGAACGGG 59 12505667 12505790 CCGTACTTGATCTTGCTTAGTG 59 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000007866 1 1 5 80 8 6152394 6152412 AGCTACAGATGGAGAAGGA 57 6140380 6152352 CATTTAACACTTCCTGTGGTC 57 NA Rattus norvegicus 81 Patl1 ENSRNOG00000021052 ENSRNOT00000066247 2 1 1 80 1 228356174 228356667 CAAGCCTGTGCAGTTTGAG 60 228356708 228356729 ACAGCATCTATCATCTTCCGAG 60 NA Rattus norvegicus 81 MGC116121 ENSRNOG00000015546 ENSRNOT00000020856 3 1 1 80 18 16443213 16443232 AGGCTCTACAAACATCAGTC 57 16443274 16445027 CCAGATGTAGGTGTTCTGAC 58 NA Rattus norvegicus 81 Aacs ENSRNOG00000000967 ENSRNOT00000001292 1 1 1 80 12 36528963 36529207 GTCGTGAAAGGACTTCCTG 58 36528901 36528923 CTTGGAAATGTCTATCTTCTCCC 59 NA Rattus norvegicus 81 Rabggta ENSRNOG00000030483 ENSRNOT00000048455 1 1 1 80 15 34394300 34395409 CTGTTACTATGTAATAACCGCCTC 59 34394243 34394261 GTTGAGGAGGACTAGCCTG 59 NA Rattus norvegicus 81 Rabggta ENSRNOG00000030483 ENSRNOT00000048455 2 1 1 80 15 34396942 34397076 AGAATAAATGGTGCCTGCT 57 34396880 34396898 ACTGCAGTGTTTCCTTCTC 58 NA Rattus norvegicus 81 Olr1016 ENSRNOG00000003347 ENSRNOT00000004458 3 1 1 60 7 7188802 7188820 TATCAGACCGAGAGCAGAC 58 7188760 7188779 TGTGTAGAAGAGGCTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col23a1 ENSRNOG00000003349 ENSRNOT00000064078 1 1 1 87 10 37015003 37016616 TTAGATGCCCTGAAGGGTC 59 37017352 37017370 CAGGCAATCCAAGTTCACC 59 NA Rattus norvegicus 81 AABR07061614.1 ENSRNOG00000032820 ENSRNOT00000048672 1 1 1 80 4 136078831 136078852 GGAATCTGAGGAAGAAGTAGAG 58 136078890 136078949 CTAAATGTTCCGGAATCATCAG 57 NA Rattus norvegicus 81 LOC100360344 ENSRNOG00000031848 ENSRNOT00000052021 3 1 1 74 6 138736059 138736185 AAAGGTGTCCAGTGTGAGG 60 138736003 138736022 GAGTTTCATGGACCTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100909605 ENSRNOG00000048191 ENSRNOT00000057271 2 1 1 85 6 127932213 127932233 CATTAGGGAAGTCTTCTCCCA 59 127932279 127933200 CCTTGTGGACTACCTGAGAG 59 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051115 ENSRNOT00000071422 3 1 1 60 8 40384441 40384459 GTGATGGGATTTGCTGGAG 59 40384483 40384501 CACAGAAGGTCAGTCTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r65 ENSRNOG00000047177 ENSRNOT00000033032 3 1 1 80 14 221423 222821 AGGAGAAACATTGGTTCCC 57 222865 222883 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 2 1 1 62 10 74386514 74386532 GAGAGGAGTTTGACCGACC 60 74384408 74386493 TTCTCCTGATTTAGGTAAGGAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Xkr8 ENSRNOG00000024312 ENSRNOT00000017618 1 1 1 80 5 150923004 150924563 GGCTACCTGTATAGGTGCC 59 150922942 150922960 CAGGTCACATTCAGACGGT 60 NA Rattus norvegicus 81 Olr1070 ENSRNOG00000008476 ENSRNOT00000011198 1 1 1 60 7 9485162 9485180 GTGAGTGTGCTGTATGGTG 59 9485120 9485139 GTTCAGGAAATCGGTTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441,ENSRNOT00000065280 1 2 2 80 5 128714627 128717722 AACACCAAATAGTACAGGCAG 58 128714567 128714587 TTTGGAGACAAGTTGACATGG 59 NA Rattus norvegicus 81 LOC100362216 ENSRNOG00000017557 ENSRNOT00000023592 3 1 1 91 9 93064612 93067994 AAAGCCCAGTTCAAGAGCA 60 93068049 93068067 ATTCCCACGGTCTTCACAG 60 NA Rattus norvegicus 81 AABR07054716.1 ENSRNOG00000047454 ENSRNOT00000072202 3 1 1 89 3 167513809 167513828 GGCATTGCTGAATCCTTCTC 59 167513996 167514386 TCCCAAATGTAGCCTATAGCG 60 NA Rattus norvegicus 81 Mrpl53 ENSRNOG00000053109 ENSRNOT00000086051 1 1 1 80 4 113942354 113942372 CAACCTCAACTGCTCTGTG 59 113942414 113942529 TACCCATCTCCGAATAACACG 60 NA Rattus norvegicus 81 Mrpl53 ENSRNOG00000053109 ENSRNOT00000086051 2 1 1 82 4 113942354 113942372 CAACCTCAACTGCTCTGTG 59 113942415 113942531 GATACCCATCTCCGAATAACAC 59 NA Rattus norvegicus 81 Olr229 ENSRNOG00000046061 ENSRNOT00000075443 2 1 1 60 1 170694289 170694308 TCAGCAGATACTTACAGCAC 58 170694248 170694268 CTAGGAGAATTACAATGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scgb2b2 ENSRNOG00000023367 ENSRNOT00000030687 3 1 1 83 1 89724362 89725019 AAGTGAGAAAGCATGCTTTCC 60 89725063 89725082 GAAAGTTCATGCTGCAACCA 60 NA Rattus norvegicus 81 Tmem44 ENSRNOG00000001726 ENSRNOT00000002353 2 1 1 80 11 73747257 73747275 TGAATACCTCCTTCAGGCC 59 73747316 73748650 GACAGAATGATGATAGCAAGGT 58 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 2 1 1 61 7 114944354 114944374 CTATGGATATGGTCAGCATGC 59 114944312 114944331 TGCTGAGGATGTGAATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000091089 2 1 2 80 13 91079472 91079993 AAATCTAGTAGTCTTGGGAAGGAG 60 91080745 91080763 ACTCCGGGAAATACGAAGG 59 NA Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952 3 1 2 88 16 24781218 24781350 GCTACTTCAAGATATACGTTCGC 60 24781152 24781170 TTTGGTCTCACTGGACCTG 59 NA Rattus norvegicus 81 RGD1561636 ENSRNOG00000032847 ENSRNOT00000049811 3 1 1 60 4 59014304 59014323 GTAAAGTTCAAGGTCCGCTG 59 59014263 59014283 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499781 ENSRNOG00000039315 ENSRNOT00000020660 1 1 1 80 3 11814170 11814318 ATCCAAAGACAGCCGACTC 60 11814108 11814127 GTTGTGATGGTTGAGAGCTG 59 NA Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 2 2 2 80 17 9779647 9779669 GTGGATTTGGAGAATCTAGTGAG 59 9779481 9779608 TTCCCTTGTCTTTGCATCTG 59 NA Rattus norvegicus 81 Stk40 ENSRNOG00000025679 ENSRNOT00000035597 1 1 1 80 5 144146979 144147349 ATCATTGCATCTTGGCAGTC 59 144147392 144147410 GCTGCTCATTTGGTCATCG 60 NA Rattus norvegicus 81 Mal ENSRNOG00000015445 ENSRNOT00000020870 2 1 1 91 3 120217105 120233494 TTTGAGTTTATCTTTGGAGGCC 59 120217035 120217053 GACACAAACATCACCCAGC 60 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000089443,ENSRNOT00000009444,ENSRNOT00000089238 3 3 3 60 6 135088691 135088710 CTCATGGACTTTGCTGAAGG 59 135024799 135024819 CTGAGTCTCCATCATAAGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Fam132b ENSRNOG00000024688 ENSRNOT00000051810 2 1 1 95 9 98510132 98511070 CCTCTATCTACAGACAGGACAC 59 98511125 98511144 ATAGCACTGAAGTGAGAGCC 60 NA Rattus norvegicus 81 Gabrr1 ENSRNOG00000007603 ENSRNOT00000010172 3 1 1 80 5 48400957 48401914 ATCGAAAGCTATGCCTACAC 58 48401954 48401975 CCTCTCATCTGTCTTTAAGGAG 58 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 2 2 2 80 2 238164886 238164906 GAATTGTGGATTTCTGCAGTG 58 238163063 238164691 TTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Rhox10 ENSRNOG00000040026 ENSRNOT00000061539 2 1 1 81 X 124207358 124207376 CCAGTATCCTGATGCACAC 58 124209420 124211272 TTTAAACCAAGCCTTCACCT 58 NA Rattus norvegicus 81 Zfp638 ENSRNOG00000014501 ENSRNOT00000019617 2 1 1 80 4 115678422 115678441 GTAGGTCCAGGAAGTGAGAC 59 115678484 115682526 TTCAGCTTCATCAACTGCC 59 NA Rattus norvegicus 81 Zfp638 ENSRNOG00000014501 ENSRNOT00000019617 3 1 1 80 4 115636589 115638114 CCATCTAGAAGGAGTCGAAGTC 60 115638152 115638173 CCTGGATCTGGATCTAGATCTG 59 NA Rattus norvegicus 81 Tnfrsf1a ENSRNOG00000031312 ENSRNOT00000048529 3 1 1 80 4 157872670 157872993 ACATGTCGGAAAGAAATGTTCC 60 157873034 157873052 GTTCTTCTTGCAGCCACAC 60 NA Rattus norvegicus 81 Cetn4 ENSRNOG00000026162 ENSRNOT00000065384 3 1 1 81 2 124046639 124046903 TTGAAGGTTCTGAATTGTGTCC 59 124046400 124046419 CTTCCTTGTCGATTTCAGGG 59 NA Rattus norvegicus 81 AABR07014114.1 ENSRNOG00000040213 ENSRNOT00000043131 3 1 1 83 14 1355057 1355075 TTTGCTGGATCCCTCACAG 60 1355117 1355497 CAATCATAGCCTATAGCATTGAGG 59 NA Rattus norvegicus 81 Rnf181 ENSRNOG00000012035 ENSRNOT00000016699 3 1 1 80 4 100224622 100224642 AATATGTTGCTAGAACTCGCG 59 100223851 100224586 CATCCTATTAAAGAGTGATCTGCTG 60 NA Rattus norvegicus 81 AABR07002689.1 ENSRNOG00000050032 ENSRNOT00000075189 2 1 1 80 1 81377921 81377940 TCAAAGAGATCCTCCAAGCG 60 81377779 81377878 GACTGGAGATGTAGGAGCC 59 NA Rattus norvegicus 81 Olr1449 ENSRNOG00000046934 ENSRNOT00000047671 1 1 1 60 10 44650638 44650657 AGACACCTTCCTCTTCACAG 59 44650680 44650698 GATGTTGCCTATGAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0749.1 ENSRNOG00000003008 ENSRNOT00000004016 2 1 1 60 X 74057691 74057712 ACACAGACCTTTCTCTATCTCC 59 74057729 74057751 GCTTTCCGAATAAACTTAGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fermt3 ENSRNOG00000021161 ENSRNOT00000028737 1 1 1 80 1 222259107 222259126 CTGGGATTTACTGACAGAGG 57 222258877 222259067 TTGTTGATATGGTACTGTAGGG 57 NA Rattus norvegicus 81 RGD1564308 ENSRNOG00000038819 ENSRNOT00000059317 1 1 1 80 16 49492743 49492762 CCAGGGACAAATATCAGCCA 60 49492803 49492914 CATTGGCATAACCGTATCCAG 59 NA Rattus norvegicus 81 Olr964 ENSRNOG00000047818 ENSRNOT00000061633 1 1 1 60 7 6935975 6935994 TGCTAGTCAGAGGTCAAAGG 59 6935934 6935955 GATGGAGATGACAATCATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ammecr1l ENSRNOG00000016250 ENSRNOT00000061074 2 1 1 80 18 24540708 24540727 CACCAACACTTACCATCGTC 59 24540770 24541369 CCCTTCTTCCAATACCGGA 59 NA Rattus norvegicus 81 Ly49s4 ENSRNOG00000051447 ENSRNOT00000090979 1 1 1 80 4 164486352 164486370 GCGTGAATGTAAACAGACC 57 164476042 164486310 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Rn60_X_0735.1 ENSRNOG00000051070 ENSRNOT00000076184 1 1 1 60 X 72561754 72561773 TGATGCCTACAGAGCTACAG 59 72561713 72561731 TTTAGCCTCAACAACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1643 ENSRNOG00000013338 ENSRNOT00000017795 3 1 1 60 15 28894757 28894775 TCATTGTTGTCACCATCGT 57 28894797 28894817 CTCAGAAAGAAGTACATGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aspm ENSRNOG00000012318 ENSRNOT00000016797 1 1 1 80 13 56552524 56552544 AAGAGAAGATCCATTGTCCCT 59 56552585 56552841 TGGGTGTCTAGGAATAGCTG 59 NA Rattus norvegicus 81 Slc35e2b ENSRNOG00000017075 ENSRNOT00000023097 3 1 1 83 5 173039708 173040295 AAATACAGGTTCTCGGCCC 60 173040342 173040360 GAAGAAGGTCCATGCTGGA 59 NA Rattus norvegicus 81 LOC100362926 ENSRNOG00000047155 ENSRNOT00000072301 3 1 1 60 7 3874969 3874991 TTCTCTTCTTCACCTACTCACTG 60 3874931 3874949 AAGACGAGGGAGATGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 3 2 2 80 2 266141629 266142710 TGTCTATCCAAATTGAACACCC 59 266142751 266142769 CTGTTAGTGGTGTGGACAG 58 NA Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 3 2 2 80 17 10357828 10357846 AGTTTGAGAAGTGGCTCCA 59 10357689 10357784 TGCCACATATCTGGAGGAG 59 NA Rattus norvegicus 81 Srbd1 ENSRNOG00000014720 ENSRNOT00000019894 2 1 1 80 6 9353507 9353528 CGTGTTCAAGATCCATTAGCTG 60 9300859 9353471 GGATACATCATGCTGATACATTCC 60 NA Rattus norvegicus 81 AC109901.2 ENSRNOG00000059447 ENSRNOT00000074614 3 1 1 80 11 85618749 85618889 TCACTTAACAGGGTCATGTG 58 85618929 85618950 AGTTTGACTGTGCTTTCTAGAG 59 NA Rattus norvegicus 81 Ccdc180 ENSRNOG00000010412 ENSRNOT00000013930 3 1 1 80 5 61526760 61536901 TGCCTTCTGGAATTACGTG 58 61536944 61536963 GTAGTTCTCTGTCACAAGCC 58 NA Rattus norvegicus 81 Neurl1b ENSRNOG00000027606 ENSRNOT00000039398 3 1 1 138 10 17048489 17048832 AATCGTCTCTGGTGACAGC 60 17048369 17048387 GTGTAGATGACCGTGTCCA 59 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 1 2 2 80 4 115791245 115791263 GAACCTCTATGGCAGTCCC 60 115791307 115791655 ACACCTTCTCCCTTTCCTG 59 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 3 2 2 80 4 115879227 115879247 GGGAAGAAATCAGTGAGTGAC 59 115879286 115880729 GGTGAGTTCAAACATCTTTCCA 59 NA Rattus norvegicus 81 Nmbr ENSRNOG00000012103 ENSRNOT00000016215 2 1 1 80 1 8941248 8941272 TCGGATAACAGTTTCACAGTC 58 8941314 8941332 AATATGGCAGCATGAGTGG 58 NA Rattus norvegicus 81 Stpg2 ENSRNOG00000023457 ENSRNOT00000029382 2 1 1 80 2 244646552 244752009 GTGCAAGAAATGAGTCTTCC 57 244752049 244752070 GTAGTTATGTTGAACTTGGGAC 57 NA Rattus norvegicus 81 Arsk ENSRNOG00000026937 ENSRNOT00000029250 1 1 1 80 2 2857786 2858924 ACTATGCTTGACATTGCTGG 59 2857725 2857745 AGATGTATTTGACGACAGTGG 58 NA Rattus norvegicus 81 LOC100911449 ENSRNOG00000048133 ENSRNOT00000060987 2 1 1 60 10 12100720 12100740 GCTGATGATTCTTACAGAGGG 58 12100760 12100780 GATGAGGATGCAGACAAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp3 ENSRNOG00000013791 ENSRNOT00000018695 3 1 1 80 1 21658357 21658375 GCACTATGCCAAGAACGTC 59 21658418 21661479 CTCCCTTTGTTCCTGTAAGC 59 NA Rattus norvegicus 81 Mphosph10 ENSRNOG00000016266 ENSRNOT00000038511 1 1 1 83 1 125224526 125224546 AAGATACGAGTTCCTTAGCTG 57 125222817 125224483 TCTCATTCATCTTCTCCTGTC 57 NA Rattus norvegicus 81 Kpna5 ENSRNOG00000030109 ENSRNOT00000046268 3 1 1 80 20 32515339 32515358 GATGACTGTATGCTGGAGAG 58 32515400 32515533 TGTGATCATGTCTTCCTCTG 57 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000081162 1 1 2 60 20 3975831 3975849 AGCATTGCATGTCTTGCTG 60 3975789 3975807 GTAAGGAAGGAGCCAGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csrnp2 ENSRNOG00000019653 ENSRNOT00000026613 2 1 1 80 7 142120984 142121002 GTGACTGTCGGCTCTACTG 60 142119610 142120940 AGGACATTCGATCCACCTG 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 1 2 2 152 4 6947747 6947875 AACTGTCTCCAGGTACACG 59 6947991 6948009 CACCTTGTTGCTGAAGAGG 59 NA Rattus norvegicus 81 Lin28a ENSRNOG00000060320 ENSRNOT00000077165 1 1 1 80 5 152235376 152235396 GTGTTCTGTATTGGGAGTGAG 59 152233365 152235334 GTTGTAGCACCTGTCTCCT 59 NA Rattus norvegicus 81 Degs2 ENSRNOG00000011716 ENSRNOT00000015855 2 1 1 80 6 132595054 132595073 ACCTTCAATGTTGGCTACCA 60 132592349 132595011 AATCATCCGTACCAGTGGC 60 NA Rattus norvegicus 81 Lyz2 ENSRNOG00000005825 ENSRNOT00000007747 3 1 1 60 7 60341115 60341134 GGATGTCTGGCTACTATGGA 58 60339546 60339566 CTCTCATGCTGAGCTAAACAC 59 NA DesignNoJunction Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 2 2 2 86 18 24744869 24745414 CACTCTGAAGAACAAGTTTGTG 58 24745461 24745479 CTCTTCTTCAGTTCCAGGG 57 NA Rattus norvegicus 81 Gtsf1 ENSRNOG00000036831 ENSRNOT00000055275 3 1 1 80 7 145037773 145037791 CCTTGGACAAGAGACTCTG 57 145037245 145037731 TGTTCCCACAAGTCTTTATCC 58 NA Rattus norvegicus 81 Tmem52b ENSRNOG00000058653 ENSRNOT00000079337 2 1 1 89 4 163268009 163269129 TTTCATCCAGCTTCCTGGG 60 163271161 163271181 ATATACCAGAGATGCACCCAG 59 NA Rattus norvegicus 81 Serinc1 ENSRNOG00000029360 ENSRNOT00000001066 2 1 1 80 20 38969689 38969709 CTCCTTCTTTCACTTCATGCT 58 38967459 38969648 GAAGGCTCATACCTGTACCA 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000074888 2 1 2 88 7 118965954 118965975 GCTGAGATCTTTGAAGATTCTG 57 118966023 118968426 GCATCTTCCTCTTTCCTCTC 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000067545,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 7 7 80 3 48220515 48220534 ACTGTGCATGTATGTCTCCT 59 48220574 48221147 ATTCGATTGCACTTATACGACC 59 NA Rattus norvegicus 81 Nlrp6 ENSRNOG00000014685 ENSRNOT00000019808 2 1 1 80 1 213689941 213690989 GTCTGAGTATTCTGACCTTGTC 58 213691030 213691048 GAGCTACCTTCAGAGCCTC 59 NA Rattus norvegicus 81 LOC100361061 ENSRNOG00000025179 ENSRNOT00000038531 3 1 1 107 20 43143075 43143096 CATGAGGTCGGGAAGTACC 60 43143165 43143185 TTTCCTTACCCTCAAGAGCTG 60 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011,ENSRNOT00000080404 1 2 2 80 10 17512961 17513483 AGAAGGTCAAGCAGTTCTCC 60 17513526 17513544 GGTTCTCGTGTTTCTGCTG 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000018925 ENSRNOT00000025584 2 1 1 139 1 253298332 253298354 TCAAGTTTGTAATGCTGGCC 59 253298212 253298230 CAGGTGTAAGAAGCCTGTG 58 NA Rattus norvegicus 81 Maf ENSRNOG00000012428 ENSRNOT00000016577 3 1 1 60 19 48195576 48195594 CAAGCAGGAGATCTCCAGG 60 48195534 48195556 CTTCTCGTATTTCTCCTTGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309036 ENSRNOG00000037298 ENSRNOT00000056420 2 1 1 105 1 100347396 100348425 GAGACTTCGGAGGATTTCAC 58 100347310 100347328 TATTCTCGTAGCGGATGCT 58 NA Rattus norvegicus 81 Tmem204 ENSRNOG00000016494 ENSRNOT00000022142 1 1 1 81 10 14431955 14442190 ACCGTCAAACTACAGTTTGAC 59 14431894 14431912 TGAAGGTGATCTGACCCAC 59 NA Rattus norvegicus 81 Bysl ENSRNOG00000049121 ENSRNOT00000075630 3 1 1 80 9 15401730 15401749 AAACGACTCAACTTCCACCT 60 15401789 15401973 GATCAGGATTCCTTTGAACCAG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206,ENSRNOT00000024711,ENSRNOT00000087402 1 3 3 80 5 167998599 167998617 CCTAGCCAAAGGAGCAGAG 60 167997440 167998556 GCAACGGTGACTTTAATCCC 60 NA Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903,ENSRNOT00000011373 2 2 2 83 6 26836482 26836501 CCTCTATCACTACGTGGCAG 60 26836547 26837210 CTATGTCCTGGAAGCCTGG 60 NA InUTR Rattus norvegicus 81 Fam184b ENSRNOG00000003704 ENSRNOT00000004923 3 1 1 80 14 70020314 70027976 AGCTGAAAGAAGTTGAAGCT 58 70028017 70028037 CTTTCTCATCTTCTAGCTGCT 58 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 2 1 1 109 18 25370078 25370454 AGTAAATGCCATGGGAAGC 58 25369987 25370007 CATAGGAACATGTTGTGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Rnase1l1 ENSRNOG00000025615 ENSRNOT00000033809 1 1 1 60 15 28044041 28044064 CTACTGTAACCAGATGATGAAACG 60 28044004 28044022 GTTTACCCGCTTGCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aaed1 ENSRNOG00000018886 ENSRNOT00000066230 3 1 1 89 17 1827471 1829556 TCCTCCAAGAAGCAGATGTC 60 1827261 1827283 GAGAATATCCAGTCAGTTTGCAG 60 NA Rattus norvegicus 81 Htra2 ENSRNOG00000022448 ENSRNOT00000037333 3 1 1 80 4 113885196 113885429 CCCTGGTTAACCTGGATGG 60 113885134 113885152 CAGAAGGGATGGCAAAGGA 60 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000050076 2 1 2 80 1 264537935 264537954 GGGATCCTACTCCATCAACG 60 264537995 264543488 TATACCTCGACTTCCTCTCGT 60 NA Rattus norvegicus 81 Crip1 ENSRNOG00000027990 ENSRNOT00000006835 3 1 1 81 6 137965326 137966449 GGAGGTGTATTTCGCTGAG 58 137966494 137966512 CTTTCCACATTTCTCGCAC 57 NA Rattus norvegicus 81 Ppfia2 ENSRNOG00000004353 ENSRNOT00000005862 1 1 1 80 7 48966136 48966154 TGAGGTCTGAACTTGACCA 58 48966196 48969954 AGGTGTCTAGATGAGTTCTCG 59 NA Rattus norvegicus 81 Zswim7 ENSRNOG00000002970 ENSRNOT00000003974 2 1 1 81 10 48593256 48593276 TTGGACCTAGTTGATCGAGAG 59 48588699 48593213 CAGAACTCCCTAGCACCTG 60 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000074082 3 1 2 146 10 104953149 104953167 CTTCACAGTGACCTTGGAG 58 104953277 104955086 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000044325,ENSRNOT00000019319 1 2 2 80 1 4852439 5027770 ATTGGAAGTGATGGATGGG 57 4852377 4852396 CTTTATTGTGATCCCTCCGT 57 NA Rattus norvegicus 81 Pigh ENSRNOG00000010914 ENSRNOT00000014775 1 1 1 80 6 102266271 102268095 GGCTATTTACATGCAGAAGGTC 60 102266212 102266232 ACTTGGGATATCTCATGTGGT 59 NA Rattus norvegicus 81 LOC690460 ENSRNOG00000042797 ENSRNOT00000065418 1 1 1 60 20 11604819 11604839 CAGTGACTTGAGCTATGACAG 59 11604861 11604879 GTCAGTGCAAGAGTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp7 ENSRNOG00000010789 ENSRNOT00000014770 2 1 1 90 8 115071453 115073968 CTTCATTGATGAAGCCCGC 60 115074022 115074040 GTAGGCTACGGTAACGGTC 60 NA Rattus norvegicus 81 Ankrd2 ENSRNOG00000013840 ENSRNOT00000018890 2 1 1 80 1 261286523 261288167 GACACCTGTGATGAGTTCC 58 261288208 261288229 CAGAAGTTTCTCCAGTATCTCC 58 NA Rattus norvegicus 81 Lamp3 ENSRNOG00000022792 ENSRNOT00000034498 2 1 1 80 11 84993656 84996790 TCTCAAATACAGAGAAGACCTACC 60 84996828 84996847 CACACTTGAAAGAATGCCCA 59 NA Rattus norvegicus 81 Lamp3 ENSRNOG00000022792 ENSRNOT00000034498 3 1 1 80 11 84977800 84977818 ACTAAATGGAAGCAGGCTC 58 84977862 84979118 GTTGCAGAATCCAAACCCT 58 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000083701,ENSRNOT00000084322 3 4 5 80 14 71617211 71618768 TCAACATTGAGAGGCTTTCTG 59 71618810 71618828 CCAACAGTTCGATGCTGTC 59 NA Rattus norvegicus 81 Faah ENSRNOG00000045949 ENSRNOT00000015667 1 1 1 80 5 134856903 134856923 CTTTCTCAACAGTATGCGTCC 59 134855712 134856170 ACAGACTGGCGATACATCTC 59 NA Rattus norvegicus 81 Mt4 ENSRNOG00000019004 ENSRNOT00000025694 1 1 1 60 19 11340569 11341809 TATGTCTGGAGGGATCTGC 58 11340527 11340545 TTTACAGCTGCAGGTTGTG 59 NA DesignRelaxed Rattus norvegicus 81 Olr960 ENSRNOG00000057263 ENSRNOT00000075430 2 1 1 60 7 6690847 6690868 GTGTAGCTGTTCTCAATACCTC 59 6690808 6690829 CTTAGGGTGTAAATGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr2 ENSRNOG00000059979 ENSRNOT00000078529 3 1 1 64 8 133195390 133195409 ACTGAACTTGAATCGTCTGC 59 133197034 133197058 CTGAGGTAACATATTACTGTCTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Crip3 ENSRNOG00000018613 ENSRNOT00000061503 2 1 1 80 9 16932872 16932893 CTACTTGAAGACATTCACTGGG 59 16932688 16932831 GACATCACCTTCTCAGCGA 60 NA Rattus norvegicus 81 Crip3 ENSRNOG00000018613 ENSRNOT00000061503 3 1 1 81 9 16932873 16932894 CCTACTTGAAGACATTCACTGG 59 16932688 16932831 GACATCACCTTCTCAGCGA 60 NA Rattus norvegicus 81 Clip3 ENSRNOG00000020821 ENSRNOT00000028247 2 1 1 80 1 88762778 88763603 AAGTGCATCAAGTGACAATGAC 60 88763642 88763662 AGTTCTCTGATGCAATGTCCT 60 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404,ENSRNOT00000028854 2 2 2 80 3 123605024 123605042 GGTGGAGAGCTAGTCACTC 59 123602550 123604982 CTTGGAGATCTGCTCTTTCAG 59 NA Rattus norvegicus 81 Rn60_17_0381.1 ENSRNOG00000052667 ENSRNOT00000086839 3 1 1 60 17 36713564 36713584 CTTGACTTTCAGATGGAGCAG 59 36713524 36713544 TGATGATGTAGATACCGTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 2 2 2 84 1 47296042 47296063 GGAGTGAAATCAGGAACATCTC 59 47292111 47295998 TAGAACACGAAGTCAGGAGC 60 NA Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 3 2 2 85 1 47303411 47307216 TTGATCAGGTGGTAAAGACCA 59 47303346 47303369 CCAGGTAGGAAATCCTTTATTGTC 59 NA Rattus norvegicus 81 Ecel1 ENSRNOG00000019447 ENSRNOT00000026387 1 1 1 80 9 94244726 94245128 TGGCCTACTATGCCTATCAG 59 94244665 94244683 GGTTGTGGGTGTACTTGAG 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000085843,ENSRNOT00000086185 2 2 3 80 8 77988180 77990034 TAAGACCAATGTGTTACCCAC 58 77988120 77988138 TCTTCTGAGGAAGCAGGAG 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 1 2 4 82 10 23664289 23664970 CAGCAATGGGATAAGGACC 58 23675996 23676014 GGCCTTCATACACTATGGC 58 NA Rattus norvegicus 81 Nol9 ENSRNOG00000010109 ENSRNOT00000013535 2 1 1 80 5 169228221 169229206 TTTGGGCTTTGGTATCTGC 58 169229250 169229268 AACTCCTCTGGTGGTAGAG 58 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 2 1 2 60 18 17556872 17606005 AAGTGACTCTGGACCAAGC 60 17606029 17606047 GGACAGTAGAGCAAGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Glyatl2 ENSRNOG00000012387 ENSRNOT00000016593 1 1 1 80 1 229540502 229540522 ATATACAGAGTTCTGAGGCAC 57 229540561 229541849 TCCCATAAACCTTTAAGGACTC 58 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911,ENSRNOT00000076166 1 2 3 60 X 71166375 71166395 CTGGTTACTGAATACCATGGG 58 71165998 71166016 CAGTCAGCCCTTTAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 Krtap19-5 ENSRNOG00000040068 ENSRNOT00000061610 1 1 1 60 11 28842139 28842159 CTATGGCAGATACGGATATGG 58 28842099 28842118 GGAGAATCCATATCCTCCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rap1b ENSRNOG00000007048 ENSRNOT00000009511 2 1 1 80 7 60856988 60857008 GCACAGTCGACATTTAATGAC 58 60855120 60856947 AATCATTGGGACATCGTCAG 58 NA Rattus norvegicus 81 Pfdn6 ENSRNOG00000000473 ENSRNOT00000000553 1 1 1 80 20 5456692 5456710 GCTTGTCAAACAGGAGCTG 60 5456754 5457252 TAGCGCTTAATTTCCGCTG 59 NA Rattus norvegicus 81 Fbxl13 ENSRNOG00000043035 ENSRNOT00000065039 3 1 1 80 4 10165078 10165096 GATAGCAGCCTCAAGTCAC 58 10165140 10166309 GATATCGCCAATCCTGACG 58 NA Rattus norvegicus 81 E4f1 ENSRNOG00000009224 ENSRNOT00000012506 1 1 1 80 10 13816844 13816969 GAGAGGTCATATAGGGCCG 59 13816782 13816800 TGCTTCTTGAGCAGGTAGG 59 NA Rattus norvegicus 81 Rn60_10_0701.3 ENSRNOG00000057143 ENSRNOT00000077901 1 1 1 60 10 70380616 70380635 CAGAGGGAAGTACAGGTGAG 59 70380575 70380593 TGAAAGAGGAGTGGTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d30 ENSRNOG00000023951 ENSRNOT00000024679 1 1 1 80 7 63366722 63370438 GCAGATTAAAGAAGGGACAGAG 59 63366663 63366681 CACGAATTGATGGCTCCTG 59 NA Rattus norvegicus 81 Wfdc18 ENSRNOG00000037097 ENSRNOT00000055923 1 1 1 65 10 71008760 71008783 GGAATGAACATTACCTATGCTCTG 60 71009424 71009442 CTTGGGACACTTTCCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Cd83 ENSRNOG00000018092 ENSRNOT00000024458 1 1 1 81 17 24431081 24433050 TCTGAAGGTGACAGGATGTC 59 24433094 24433112 AGAGAAGAGCAACACAGCT 59 NA Rattus norvegicus 81 Wrap53 ENSRNOG00000010520 ENSRNOT00000014261 1 1 1 80 10 56171176 56184265 GATTATGCCGAAATGGTTCCT 59 56171116 56171136 GGACATCAGAGAATACCAGCA 60 NA Rattus norvegicus 81 Tssk5 ENSRNOG00000013753 ENSRNOT00000018528 2 1 1 80 7 117439139 117439348 AGCACATGAACATAGTTCAGC 59 117439079 117439097 CTCTAGCTGCCAACTCCAG 60 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 1 2 2 80 7 37141470 37141490 GTGAGAAGCTGATGGATAAGG 58 37141531 37142622 TTTCCTTCAACTGCTCTTCC 58 NA Rattus norvegicus 81 Tas2r139 ENSRNOG00000028135 ENSRNOT00000037220 3 1 1 60 4 71512701 71512719 CAACCCAGCAACTATTGGA 58 71512739 71512761 CAAGTGTTAGGATCAAGATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909464 ENSRNOG00000016849 ENSRNOT00000022862 2 1 1 80 9 16605533 16605742 CTTGAAAGATTCGCCAACC 57 16605786 16605804 ACGAAGTCAAAGAGGACAC 57 NA Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000019473 3 1 2 160 17 13802803 13812448 AGAACGAGAGCCTGTTTCC 60 13802661 13802682 ATGCCATGACTTCCTATAGACG 60 NA InUTR Rattus norvegicus 81 Wdr33 ENSRNOG00000011382 ENSRNOT00000017075 3 1 1 80 18 24669820 24670494 ACGGAGTAGAGTATGATGACC 59 24670535 24670554 CCAGTTTCAGTTGTTCTGGG 59 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 3 2 2 81 7 14239218 14239236 AAGGGCTTCTCATCCTCTG 59 14230525 14239174 GAGCCATCTCTGTTTCAGAG 58 NA Rattus norvegicus 81 Rit2 ENSRNOG00000017568 ENSRNOT00000023874 2 1 1 81 18 23881309 23881329 CGTCACACCTATGAAATTCCC 59 23701161 23881269 CTTCTTCTGTAGAAACCTGACG 59 NA Rattus norvegicus 81 AABR07014016.1 ENSRNOG00000050954 ENSRNOT00000073973 3 1 1 80 14 184825 186241 AGGAGAAACATTGGTTCCC 57 184763 184781 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Olr1450 ENSRNOG00000033659 ENSRNOT00000044332 2 1 1 60 10 44680127 44680146 TCCAAGCCTTTGTGTTTCTG 59 44680168 44680187 GACATGAAACCCAGCAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnaq ENSRNOG00000014183 ENSRNOT00000019174 3 1 1 80 1 233578288 233578306 TGCTTAGAGTTCGAGTCCC 59 233578347 233581063 CATCGACCATTCTGAAGATGAC 59 NA Rattus norvegicus 81 Brd1 ENSRNOG00000004538 ENSRNOT00000006034 2 1 1 81 7 129702620 129703074 GAGTCTCAAGGAGGTACCAG 59 129702558 129702576 AGCTTCTAGCCGTTTCCTC 60 NA Rattus norvegicus 81 Klhl11 ENSRNOG00000016921 ENSRNOT00000022695 3 1 1 85 10 88388704 88388724 TTATCGAGTACATGTACACCG 58 88380522 88388659 TAATAAGAATCTGTCCGCCAG 58 NA Rattus norvegicus 81 Klhdc3 ENSRNOG00000017495 ENSRNOT00000023979 3 1 1 81 9 16616170 16616262 GAAGCCATTCAGCCTTTGG 60 16616306 16616325 TCATGGAAATGCCGATTCAG 59 NA Rattus norvegicus 81 Mertk ENSRNOG00000017319 ENSRNOT00000023419 1 1 1 80 3 121317305 121319642 AGTGAAGACCATGAAGTTGGA 59 121319684 121319702 AAGTCTTTCATGCACGCTG 59 NA Rattus norvegicus 81 Olr1564 ENSRNOG00000045930 ENSRNOT00000060869 2 1 1 60 11 43733318 43733340 ACTTCTGTTCCTAGTGTTCTCTG 60 43733360 43733378 CAGCCCAAGATTCCCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561871 ENSRNOG00000030441 ENSRNOT00000046453 2 1 1 85 7 63352442 63352460 GACAAGAAAGCTGAGGCTG 59 63352509 63352666 TGAGGTTCACTGAGGTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rab3il1 ENSRNOG00000020349 ENSRNOT00000027611 3 1 1 86 1 226080800 226082723 ACAACACCAACACATGTGC 60 226082772 226082791 TGTAATAGTGGCCGTCAGAG 59 NA Rattus norvegicus 81 Mb ENSRNOG00000004583 ENSRNOT00000006184 1 1 1 80 7 118103895 118108750 CTCATCAGTCTATTTAAGGCTCAC 59 118103838 118103858 CATCTCTTCCTCGGATTTCAG 58 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501,ENSRNOT00000045647 3 2 2 67 7 130542283 130543210 GATAACACCACGTGTGATGG 59 130543240 130543258 ATCCGGATACCTGCTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1306782 ENSRNOG00000005572 ENSRNOT00000007357 1 1 1 60 7 123222310 123222328 CATACAGTGGATGGAGGAC 57 123222350 123222370 GTTTGGGTTCTTCAAGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fdx1l ENSRNOG00000023020 ENSRNOT00000028127 1 1 1 63 8 22087018 22087036 TACCACCTCCTGAGGAGAG 59 22086875 22086893 GAGTTCTCCTGGAGCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Rrm1 ENSRNOG00000045752 ENSRNOT00000074058 1 1 1 80 1 167557751 167557769 AGTCCATTGAGCCTTACAC 57 167557810 167559597 GTAAGTGAGGATTCACAATCTG 57 NA Rattus norvegicus 81 Il17re ENSRNOG00000009204 ENSRNOT00000056508 3 1 1 80 4 145424835 145424933 TTGTGTCCTGATGTCTCCC 59 145424976 145424995 AACTACACCCAGTAGAGTGG 59 NA Rattus norvegicus 81 Prr11 ENSRNOG00000006198 ENSRNOT00000038296 3 1 1 80 10 74404183 74407403 AACTTGAAGAGCATCTCGGA 59 74404122 74404142 CACAGTTGTAAGTCTGTCACC 59 NA Rattus norvegicus 81 AABR07006458.1 ENSRNOG00000046420 ENSRNOT00000071578 1 1 1 80 1 235394862 235394881 GGGAGTACACAGAGTCTTCG 60 235394014 235394823 CACTAGGTGTTAAGAGAACTGGA 60 NA Rattus norvegicus 81 Tyms ENSRNOG00000037225 ENSRNOT00000056243 1 1 1 80 9 121929904 121929923 AATTTCCTCTGCTCACAACC 59 121928443 121929863 TTGTGGAGCCCTTAATAAACC 58 NA Rattus norvegicus 81 Olr1111 ENSRNOG00000031503 ENSRNOT00000043467 2 1 1 60 7 140108309 140108328 CTTCTCGGTCCTCTACACAG 59 140108349 140108369 CTTGAGACTGTAGATGATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgkb ENSRNOG00000030771 ENSRNOT00000063874 1 1 1 80 6 57720540 57720559 TCATTCAGCAACAAATTCCC 57 57720601 57738895 ATTCATCCTCAAACCACCTG 58 NA Rattus norvegicus 81 Tes ENSRNOG00000051952 ENSRNOT00000091095 2 1 1 80 4 44321970 44342090 TGAAGAAGATGGGCTTAGGTC 60 44342129 44342150 GTTCAAACCCTTCACAGTTCTC 60 NA Rattus norvegicus 81 RGD1560685 ENSRNOG00000013839 ENSRNOT00000018492 2 1 1 60 19 13287528 13287546 AAGCTCATTGAGGCAGAGG 60 13287567 13287588 TGTATGTGACTGTGATGTTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560685 ENSRNOG00000013839 ENSRNOT00000018492 3 1 1 60 19 13287481 13287500 GCTACATGGTAACACGTGAG 59 13287523 13287541 GCCTCAATGAGCTTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181,ENSRNOT00000085464 1 2 2 80 12 32598817 32601179 GACCACTATCCAGATCCTGTC 60 32601221 32601239 GTCACCTTCTCATCCAGCA 59 NA Rattus norvegicus 81 AABR07065640.1 ENSRNOG00000047622 ENSRNOT00000071078 2 1 1 119 6 138506951 138506969 CTCTCAAATCCCGACTGAG 57 138506756 138506868 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 LOC100363294 ENSRNOG00000052628 ENSRNOT00000088432 2 1 1 82 18 27555780 27555799 GATCTCCTGGATAACTGGCC 60 27555844 27557478 AAGTATGCAAACTGGGCCT 60 NA Rattus norvegicus 81 Rbm44 ENSRNOG00000024878 ENSRNOT00000038536 2 1 1 80 9 98302743 98302761 GAACCTTCGTAGCTTCACC 58 98302803 98302939 GCCTCTATAATGTGGTCTCTG 58 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675,ENSRNOT00000083672 3 2 2 80 4 65113324 65116476 GTGGAAAGTTATGGAGTACAGAC 59 65116516 65116534 CTAGCTTGAGGGTCTGCAG 60 NA Rattus norvegicus 81 Lrrtm4 ENSRNOG00000021938 ENSRNOT00000030588 3 1 1 118 4 110700401 110702285 GACAAAGGATGGGTTTCCG 59 110702367 110702385 GTTCTTTGGGCAAGCTCTC 59 NA InUTR Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 1 2 2 107 17 10758182 10758749 CAGCAGATTCGAGATAAGTATGG 59 10758097 10758115 CTTCTTGGGTCTGGTCAGG 60 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 1 1 1 94 X 15425395 15425819 CTGAGGTACTTGCTAGGGC 60 15425319 15425337 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Itgb7 ENSRNOG00000012208 ENSRNOT00000016642 3 1 1 80 7 143827527 143827770 GCGCAGAGTTTGACTATCC 59 143827465 143827484 TGACAGCAAAGATAGGTTGG 58 NA Rattus norvegicus 81 Palld ENSRNOG00000010107 ENSRNOT00000059673 1 1 1 80 16 31759042 31761209 GGTAACTTCAGCCAACACC 59 31761252 31761271 GGTGGAAAGTGTTGGAAGTG 59 NA Rattus norvegicus 81 Cdo1 ENSRNOG00000000158 ENSRNOT00000000172 1 1 1 80 18 40712100 40712119 TGTGGATCAAGGAAATGGGA 59 40709485 40712059 GTGTGATCGTGAATACTGCTG 60 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000071180 1 1 2 93 1 90959134 90959152 AAAGTGTCTGACCTCAGCC 60 90958845 90959077 CTTCATGAGGCATGATGCC 59 NA Rattus norvegicus 81 Anapc10 ENSRNOG00000018296 ENSRNOT00000024689 2 1 1 81 19 31866385 31866403 AGAGGACAGCAACAGTGAG 59 31862108 31866340 TGATCCACTCCAAACCCTG 59 NA Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 1 1 1 60 11 33890001 33890019 CCAGGCTGTCTGTACAGAG 60 33890043 33893013 GACATTCACCACTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Ccser1 ENSRNOG00000029321 ENSRNOT00000043827 1 1 1 80 4 91884067 91884085 CAGCATTTACAGAAGGCGT 59 91884127 91971253 TAGAAAGGCAGAATCACATCC 58 NA Rattus norvegicus 81 Ccser1 ENSRNOG00000029321 ENSRNOT00000043827 2 1 1 80 4 91884116 91971245 CTGAACTTCTAGGATGTGATTCTG 59 91971282 91971302 TGCTTGTATTTCTTCTAGCCC 58 NA Rattus norvegicus 81 Elp5 ENSRNOG00000027628 ENSRNOT00000032481 3 1 1 83 10 56580498 56581958 ACTTACCAGACTTGGTGGT 58 56580433 56580451 GTGTAGCTCAGAATGGAGG 57 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000032605 ENSRNOT00000046799 3 1 1 60 6 145777451 145777471 TGAGATTGCTCACAATGTGTC 59 145777411 145777429 CTGTGCTGCTCTTTCTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vegfc ENSRNOG00000011416 ENSRNOT00000015529 2 1 1 80 16 40483031 40554952 AGGTCAAGGGTTTCGAAGG 60 40482969 40482987 ACAGGACAGACATGAGCTC 59 NA Rattus norvegicus 81 Gmpr ENSRNOG00000017250 ENSRNOT00000023613 2 1 1 91 17 19574418 19574436 CTACTCAGGGATTCCCGTC 59 19571792 19574363 CTGTGAACATGGCATGCTG 60 NA Rattus norvegicus 81 Mir349 ENSRNOG00000036516 ENSRNOT00000054623 2 1 1 77 7 130146591 130146610 ACTCTAGCATGTAAGGTTGG 57 130146533 130146551 AGAGGTTAAGACAGCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep170b ENSRNOG00000033688 ENSRNOT00000030246 1 1 1 80 6 137295421 137295440 CTGTCATCAACTACGACCAG 58 137295482 137296199 CGTCATTCACAAATGTCCCA 59 NA Rattus norvegicus 81 Cyp4f6 ENSRNOG00000048450 ENSRNOT00000060210 3 1 1 80 7 14602678 14603657 TGAACATCATGCACATCCAG 59 14603697 14603718 GATGGATATCTCGGAAAGTCTG 58 NA Rattus norvegicus 81 Tas2r143 ENSRNOG00000026817 ENSRNOT00000031943 1 1 1 60 9 118333070 118333089 GGTTCACTCCTTTCTTCCTG 58 118333111 118333130 CGGTACAGTGAGAACATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000083157 3 1 2 85 1 222619952 222619970 CCACCGACAGTAAGAACTC 58 222619715 222619904 CATGGTCTAAGCTGAAGAGG 58 NA InUTR Rattus norvegicus 81 Hrh2 ENSRNOG00000018260 ENSRNOT00000024580 2 1 1 93 17 10930496 10952394 AGCACCAGCTTCTATGACC 60 10930421 10930439 ATGTCCTTCTCCATGGCTG 60 NA InUTR Rattus norvegicus 81 Slc22a7 ENSRNOG00000018420 ENSRNOT00000025094 2 1 1 80 9 16929229 16929249 CCTCATACTTAGACCTGTTCC 57 16929291 16929736 AGTTCACTCCAAACCACAC 58 NA Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 2 2 2 80 1 277658637 277659088 TACACGGTTGATCAGACCT 58 277659131 277659150 GATGTACAAGACATGTGCCT 58 NA Rattus norvegicus 81 Selo ENSRNOG00000060120 ENSRNOT00000078620 2 1 1 80 7 130077675 130077694 TCAACACTGACAACATGAGC 59 130077736 130078372 GGTCAGGGTCATACCTATCC 59 NA Rattus norvegicus 81 LOC100909954 ENSRNOG00000048986 ENSRNOT00000075676 1 1 1 60 6 129320429 129320447 GAGGAGCATTCATGGACTC 58 129320469 129320489 GAGTTAAACAGGGAGTACTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mylip ENSRNOG00000017579 ENSRNOT00000024021 1 1 1 80 17 19688950 19690222 TTGAACAGCATTGTTGGGA 58 19688888 19688907 CACAATCTGCAGAACTTGGT 59 NA Rattus norvegicus 81 LOC691113 ENSRNOG00000011713 ENSRNOT00000015807 1 1 1 111 4 100211483 100211814 TATATCAGGACGATGATCCCG 59 100211887 100211905 TTTGCAAGTTCCTCCTGGA 59 NA Rattus norvegicus 81 Nkx2-5 ENSRNOG00000020747 ENSRNOT00000028155 2 1 1 138 10 16636402 16637853 GGATAAGAAAGAGCTGTGCG 59 16637954 16637972 CTCCAGCTCATAGACCTGC 60 NA Rattus norvegicus 81 Cox7c ENSRNOG00000030237 ENSRNOT00000051895 2 1 1 107 2 14701731 14701749 GTATCCGGAGGTTCACCAC 60 14700896 14700914 TCATAAGCAGTAACCGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Wdr7 ENSRNOG00000018387 ENSRNOT00000025325 2 1 1 80 18 59112435 59117097 GCATACAGTTCTACCAGTTCTC 59 59117137 59117156 CGAGGATTTCAGGGTAATGC 59 NA Rattus norvegicus 81 Ptgs2 ENSRNOG00000002525 ENSRNOT00000003567 2 1 1 80 13 67353089 67353108 CAACCTCTCCTACTACACCA 58 67353149 67353716 TCCTTATTTCCTTTCACACCC 58 NA Rattus norvegicus 81 Mmp28 ENSRNOG00000047940 ENSRNOT00000013836 3 1 1 80 10 70662077 70662396 CACTGTAGATGGGCAATGG 58 70662015 70662034 TCTGAAACATTGCCATCAGC 59 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910,ENSRNOT00000091227 2 2 2 83 7 30078753 30095288 GGCTGCAAAGGTTTCTTCC 60 30078688 30078707 CATATCCATCACGCAGTTGC 60 NA Rattus norvegicus 81 Hcrt ENSRNOG00000018892 ENSRNOT00000025547 2 1 1 143 10 88669655 88670332 TCTACAAAGGTTCCCTGGG 59 88669530 88669548 CAACAGTTCGTAGAGACGG 58 NA Rattus norvegicus 81 Prpf40a ENSRNOG00000004864 ENSRNOT00000006549 2 1 1 80 3 38684209 38684229 ACAGAAGTAGGCAGAGATCAG 59 38682925 38684171 AAGTATCCCAGTTACCAGAATCC 60 NA Rattus norvegicus 81 Ttc37 ENSRNOG00000040297 ENSRNOT00000062017 2 1 1 80 2 2943714 2944460 GCAGTGGCTGATTTACAGG 59 2944499 2944522 TAAGTATGCCTCTCCTAATGACTC 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377,ENSRNOT00000086349 2 2 2 80 1 174430160 174434038 ACATACGATGAAGACTACCAGG 60 174430101 174430119 TTCCTGGTGGTTCTCAGAC 59 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 1 2 2 80 6 106539141 106548951 CATAGAGATGAGCAAAGAGCC 59 106548992 106549011 ACCTGGTCCTTCAGTATCTC 58 NA Rattus norvegicus 81 Myg1 ENSRNOG00000013343 ENSRNOT00000017942 1 1 1 80 7 143935861 143935879 TGACCACTACACTGAGTGC 59 143935923 143936060 TGAATCCTGCCTCAGTGTC 59 NA Rattus norvegicus 81 Golga1 ENSRNOG00000014493 ENSRNOT00000019703 2 1 1 80 3 23341287 23341307 AAACATTCCAAGCCAACAGAG 60 23339624 23341246 TTTCTGACCATTCCTGGTCC 60 NA Rattus norvegicus 81 Cct7 ENSRNOG00000015630 ENSRNOT00000021030 3 1 1 80 4 117243779 117243797 TGCTGAGGCTGTAAGAACC 60 117243840 117244592 GAAATTGTTGCTTTGCCTCG 59 NA Rattus norvegicus 81 Zfp353 ENSRNOG00000050804 ENSRNOT00000072732 3 1 1 60 5 108746740 108746760 GACTCTCAGATACCAAACTCC 58 108746700 108746720 ATGTTGTTCTCTTAGTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572,ENSRNOT00000089747 2 2 2 80 4 21536317 21541767 CAAGTGACTACAGAGTGCAG 58 21541810 21541828 CAAACAAACAGCCCAAGAC 58 NA Rattus norvegicus 81 Usp33 ENSRNOG00000011294 ENSRNOT00000066125 2 1 1 80 2 257580856 257580875 CACGTTTATCAGCAAGTCCT 58 257580915 257584414 ATGAAGACTGAGCTTTCTTGTG 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 3 2 2 80 X 15156398 15156417 TGGGAACAGGAGCTATACTC 58 15156460 15156566 TTGACAGTCATCTCCAGCA 59 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000002656 1 1 2 60 9 17211899 17211917 GATGCCATCTCCAAGACCT 59 17211857 17211876 TGAACACAGTCTCTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216,ENSRNOT00000067281,ENSRNOT00000078274,ENSRNOT00000064755 1 4 4 80 5 58690767 58691166 ATGTCTGGTATAATCTGGAGAAGAG 60 58691201 58691222 TGATCTCCACATTGATTTGCAG 59 NA Rattus norvegicus 81 Fam180a ENSRNOG00000011750 ENSRNOT00000015752 2 1 1 82 4 62847663 62847681 CAAAGAGGTCCTTGTCCCT 59 62846214 62847618 TAGCAAGAGCTCATACAGCA 59 NA Rattus norvegicus 81 Egfem1 ENSRNOG00000023908 ENSRNOT00000039603 3 1 1 80 2 117109571 117109589 CTTAGGAGGCTATGAGTGC 57 117109633 117116050 TCATCGTCTAAAGCGTCAC 58 NA Rattus norvegicus 81 Olr1355 ENSRNOG00000050126 ENSRNOT00000073059 3 1 1 60 10 12312193 12312212 CTGCTGATGACTCAACTCTC 58 12312152 12312172 CATCACAGAAGAAGTGAGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf182 ENSRNOG00000018070 ENSRNOT00000024323 1 1 1 141 17 24242724 24289906 CTGGTCAGATCCTTCAGCT 59 24290011 24290029 TCACATCATCCGAGTCAGG 59 NA InUTR Rattus norvegicus 81 Gdap1 ENSRNOG00000005850 ENSRNOT00000007994 2 1 1 80 5 1332074 1333158 GAAATGAAGAAACTCCAGATGAGG 60 1332017 1332035 CAGCCAATGAGACATCTGC 59 NA Rattus norvegicus 81 Gucy2c ENSRNOG00000009031 ENSRNOT00000012212 1 1 1 80 4 170740094 170740112 AAACTTGAGGGATGCTGTG 58 170733029 170740053 TTCACAGTCACATTTAGTTCGG 59 NA Rattus norvegicus 81 Nsdhl ENSRNOG00000057814 ENSRNOT00000091154 3 1 1 80 X 152957578 152957596 CTGAAGACCTCCCTTATGC 57 152957639 152959642 CATCCAGTACTGCTCTTTCC 58 NA Rattus norvegicus 81 Figla ENSRNOG00000015877 ENSRNOT00000021272 1 1 1 80 4 117681137 117683200 AGGCCTCAGAGAAACAAGG 59 117683244 117683262 CTCTAGTCGAGGACACGTG 59 NA Rattus norvegicus 81 Pnma3 ENSRNOG00000052022 ENSRNOT00000079424 3 1 1 85 X 153065742 153066241 GAACTCAGATGGGAACATCC 58 153066288 153066307 CAAATGGACTTGAGGTTGCT 59 NA InUTR Rattus norvegicus 81 Mpp2 ENSRNOG00000059683 ENSRNOT00000092150 2 1 1 82 10 90022805 90027322 TCTGAGTCTGCTATGCAGC 60 90022741 90022759 AAGATCAGGTCCAGTTCCG 59 NA Rattus norvegicus 81 RGD1563861 ENSRNOG00000056765 ENSRNOT00000083951 3 1 1 80 X 156439212 156439398 TCTCTTCTGAAGCACTGGA 58 156439150 156439168 TATGAAAGCCATCCTTGCC 58 NA Rattus norvegicus 81 Rn60_1_0913.2 ENSRNOG00000051284 ENSRNOT00000076885 1 1 1 60 1 90131160 90131180 GTTGCTTGAACTTCATTGAGG 58 90131120 90131138 CCTTTGCGACCAAATCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 2 3 3 80 12 37680955 37688472 TTGTAGTCAAGTGCCACCA 59 37680893 37680912 CATCCACTTTCTCCTGGAGG 60 NA Rattus norvegicus 81 Olr1353 ENSRNOG00000046386 ENSRNOT00000056601 1 1 1 60 9 99796576 99796594 GGAACAAGGACGTGAAGGA 60 99796616 99796725 TTTCTCACAAGGTTGTGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Pvalb ENSRNOG00000006471 ENSRNOT00000067635 2 1 1 81 7 119438572 119438592 GTCTGCTAAGGAAACAAAGAC 57 119429229 119438530 AGTGGAGAATTCTTCAACCC 58 NA Rattus norvegicus 81 Poldip2 ENSRNOG00000009252 ENSRNOT00000013100 1 1 1 80 10 65785698 65785717 TCTCAGACAGAAGCTGTGAC 60 65785760 65785986 GACATAGTCCAAGCCTGGG 60 NA Rattus norvegicus 81 LOC100361056 ENSRNOG00000013510 ENSRNOT00000018040 1 1 1 142 4 10822738 10822756 CGTATTTCCCGACCTTCGA 60 10819128 10819146 CCAGGTGAGCAGTACTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc35a2 ENSRNOG00000024801 ENSRNOT00000063952 1 1 1 80 X 15457598 15457621 TCTATACCTTGCAGAATAACCTCC 60 15455488 15457559 TCAGCTGATACGTCACCTG 59 NA Rattus norvegicus 81 Slc35a2 ENSRNOG00000024801 ENSRNOT00000063952 3 1 1 82 X 15457599 15457623 CATCTATACCTTGCAGAATAACCTC 59 15455488 15457559 TCAGCTGATACGTCACCTG 59 NA Rattus norvegicus 81 Wars2 ENSRNOG00000019508 ENSRNOT00000026458 1 1 1 80 2 201252756 201252775 TAGTTCAGGATCTAGCTCGG 58 201252815 201254378 TCATGGATGTGAGAATAGACCT 59 NA Rattus norvegicus 81 Zfp54 ENSRNOG00000051578 ENSRNOT00000077642 2 1 1 80 1 61321753 61324544 TCTCTGTTGAGAACTACTGCA 59 61324585 61324604 GCTCATTACACTGACAGGAC 58 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 2 2 2 128 5 64673615 64673634 AGTCAGAATTCCACCCAAGG 60 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Pon3 ENSRNOG00000009096 ENSRNOT00000012050 1 1 1 80 4 30317857 30317876 TCAAAGTAGTAGCCCAAGGA 58 30316683 30317820 CATCAGCTACATAGACATACTTCTG 59 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675,ENSRNOT00000005478 2 2 2 80 10 17262118 17269034 GAAGAAATCAGGGAGTGACC 58 17269075 17269095 TGCTTCTGATAGTTTGCTACC 58 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810,ENSRNOT00000039677 1 2 2 80 1 217649947 217650439 CACAGAATACACAGGCTCG 58 217649885 217649904 CATCAAACCTCCGATCAGTC 59 NA Rattus norvegicus 81 Mcm4 ENSRNOG00000001833 ENSRNOT00000002510 1 1 1 80 11 89514171 89514191 ACATCAGATTCAAGTCAGACC 58 89514232 89516385 AGCTGATCAATGTCTTCTGG 58 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 1 2 2 260 4 7259226 7259517 AAAGAACCCAGTTTCCAGG 58 7259741 7259759 GGATCTGGCAGTACCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1541 ENSRNOG00000029104 ENSRNOT00000043299 3 1 1 60 11 43340883 43340904 TGCAAACCTTTACTTTACCCAG 59 43340922 43340943 TTGTTAGAAGACGTACACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1547 ENSRNOG00000049012 ENSRNOT00000039939 2 1 1 60 11 43465594 43465615 GACACCAAAGATGCTACAAGAC 60 43465634 43465654 GCATCCAGAGAAAGAGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgsl1 ENSRNOG00000026952 ENSRNOT00000029773 1 1 1 80 13 71266402 71267552 CATGGACATCAAGTCCCTC 58 71266340 71266358 ATGTGGCTTAGGATCTCCC 59 NA Rattus norvegicus 81 Porf1 ENSRNOG00000003891 ENSRNOT00000005162 3 1 1 60 6 114476674 114476693 CCTATAGCCTCCAACCACAG 60 114476633 114476651 ATACACAGTGGGAAGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 2 2 2 86 5 59148108 59148201 CAGATCTGTAAAGAGGTGCA 57 59148041 59148060 CACTCTGTAGTCATGGTGTG 58 NA Rattus norvegicus 81 Ampd1 ENSRNOG00000018656 ENSRNOT00000025248 2 1 1 80 2 205581365 205581383 GCTGAATGAGATGGACGAG 58 205581427 205582444 TGAGTATCCACCTTCCTGC 59 NA Rattus norvegicus 81 Tnni3k ENSRNOG00000028225 ENSRNOT00000030341 1 1 1 80 2 261069712 261074520 TGTTGACAAATACGGCTATGTG 59 261069653 261069671 TCCTCAAAGTTGCTGTCGT 60 NA Rattus norvegicus 81 Kcnd1 ENSRNOG00000039544 ENSRNOT00000011994 2 1 1 83 X 15513668 15519604 TGACCACACTTGGGTATGG 59 15513603 15513622 AGACACCACTAAGTGAGCAG 60 NA Rattus norvegicus 81 Kcnj3 ENSRNOG00000005369 ENSRNOT00000007335 3 1 1 93 3 41020577 41020596 AAACTCACTCTCATGTTCCG 58 41020652 41029577 GTGTCTGCCGAGATTTGAG 59 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000022082 ENSRNOT00000036247 3 1 1 81 4 117803569 117803802 CGTCGTGTCAGAAAGAACC 59 117803506 117803527 GGACTTGTTCTGTAAGATGTGC 60 NA Rattus norvegicus 81 AABR07009357.1 ENSRNOG00000050719 ENSRNOT00000071039 1 1 1 82 2 94315856 94315893 CATCAAAGGACACAGACCA 57 94315792 94315811 CACTCACTTCCTGATTCCAG 58 NA Rattus norvegicus 81 LOC100912195 ENSRNOG00000033844 ENSRNOT00000048996 3 1 1 111 1 116566772 116567162 CAGAACAGGTCTGAGGACC 59 116566360 116566380 CTCCTTGATCTTTGGACTCCA 60 NA InUTR Rattus norvegicus 81 Ppp1r1a ENSRNOG00000036827 ENSRNOT00000055271 3 1 1 93 7 145149454 145149845 CACTTCTCAAGTCCACACTG 59 145148828 145148846 TCAACCATTGTCTGGAGCT 59 NA Rattus norvegicus 81 Svs3b ENSRNOG00000036782 ENSRNOT00000055166 2 1 1 80 3 159084578 159084597 TGAAGTCCATCTTCTTCAGC 58 159084289 159084536 TTGTCCCACCATAGATTCCT 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 3 3 5 164 20 5416725 5416837 ACTTTCCCAGAGATGGGAG 58 5416965 5417160 TAGACTCCTTTCCCACCTG 58 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 2 2 2 80 19 10756663 10756683 AGTACATTGAAGAGCAGTTGC 59 10756078 10756622 CTTTATGGTGCTGCAGTGTG 60 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 3 2 2 82 4 99976012 99979933 ATCCTCAAGTGCATGTTGG 58 99979977 99979997 ATGTCACATTCTTCAGCAGTG 59 NA Rattus norvegicus 81 Fam171a2 ENSRNOG00000021041 ENSRNOT00000028563 3 1 1 87 10 90385256 90385789 GATCTACTACTGCCGACGA 58 90385187 90385205 ATCTCGTTTGTTGTCCGAG 58 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000016827,ENSRNOT00000090565,ENSRNOT00000017108 1 4 4 80 7 120529588 120529606 CCAAGGACCTCTTCGACTG 60 120528002 120529549 CCATGGATTTACTGTGTAGAATGG 60 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 2 1 1 87 6 141487858 141488223 GATGGCACTAACTACAGGG 57 141487789 141487807 CAACTTGACTGAGGTCCCA 59 NA DesignNoJunction Rattus norvegicus 81 A2m ENSRNOG00000028896 ENSRNOT00000019346 1 1 1 80 4 154324300 154327027 CCGCATCCCTGATTTATGAC 59 154327069 154327088 TGTCTTCTTCCCGTTGATCC 60 NA Rattus norvegicus 81 Hsfy2 ENSRNOG00000038569 ENSRNOT00000058831 3 1 1 60 9 63290378 63290399 TGCTCCTTTAAATGATGTGTCC 59 63290339 63290359 CGCTTGAGTGTAGATTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac1l ENSRNOG00000013695 ENSRNOT00000018423 3 1 1 60 9 84893707 84893725 GTTTCAACTTGCCAATGCT 57 84893665 84893683 CGAGCGACATTATGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wipi1 ENSRNOG00000003827 ENSRNOT00000005172 2 1 1 81 10 97863196 97863214 AGTGATTCCAGAACACGAG 57 97860262 97863151 ACGGCACAAGATTATAGGG 57 NA Rattus norvegicus 81 Arf6 ENSRNOG00000004791 ENSRNOT00000006355 1 1 1 60 6 91697568 91697587 TGCACCGCATTATCAATGAC 59 91697610 91697628 TTGTTGGCGAAGATGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arf6 ENSRNOG00000004791 ENSRNOT00000006355 2 1 1 60 6 91697298 91697316 AAATGCGGATCCTCATGCT 60 91697338 91697358 AACTTGTACAGGATCGTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl10l ENSRNOG00000032720 ENSRNOT00000047597 3 1 1 60 6 88231695 88231713 ATTTGAAGACAAGGTGGCG 59 88231653 88231672 GATGTACTTGACTCCACAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 1 2 2 80 10 87299291 87299309 CTGACAATGCCAATGTCCT 58 87298772 87299250 CTTCATTCTCATACTTCAGCCT 58 NA Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 2 2 2 80 10 87299290 87299308 TGACAATGCCAATGTCCTG 59 87298771 87299249 ACTTCATTCTCATACTTCAGCC 58 NA Rattus norvegicus 81 Krtap3-1 ENSRNOG00000012544 ENSRNOT00000016752 3 1 1 62 10 87484813 87484831 TGTTCCTCTGACAAGTCCT 58 87484769 87484787 GATCTCATGTGGGCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebp ENSRNOG00000004903 ENSRNOT00000007015 3 1 1 82 X 15051856 15054185 CCCAACTCTGGAAAGAATATTCC 59 15054333 15054353 TGTGACACTCTCCATACAGAC 59 NA Rattus norvegicus 81 RGD1561849 ENSRNOG00000021663 ENSRNOT00000039237 1 1 1 99 5 9364115 9370309 CAGACCTGTGGGAATTTCTG 59 9360820 9360838 TTTCACTGAGATCCTGGCC 59 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 2 2 2 83 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821383 144826168 GCGATATCATTGCTTTGCTC 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864,ENSRNOT00000084946,ENSRNOT00000089723 2 4 4 84 1 128217249 128217267 GTGGTGTCTGTGACAACTC 58 128213316 128217204 ATGAGTAATCAGTGTTGTAGGC 58 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 3 2 2 81 4 148401728 148401746 GTCTGAGTACCTGACGGTG 60 148401172 148401683 GGAGCACCAGTCATACTGG 60 NA Rattus norvegicus 81 Eps8l2 ENSRNOG00000018336 ENSRNOT00000024725 3 1 1 80 1 214351906 214352040 GGGAACAAAGAAGAGCTAATCC 59 214352081 214352099 CTGTGTCTTGATGTGGCTG 59 NA Rattus norvegicus 81 Micall1 ENSRNOG00000026212 ENSRNOT00000036357 3 1 1 80 7 120367656 120367799 CATTTATGTCTTCAAGCAGCAG 58 120367840 120367858 GGCTTATTGAGAAGGCACC 59 NA Rattus norvegicus 81 LOC690000 ENSRNOG00000014966 ENSRNOT00000020079 3 1 1 67 1 94579229 94579247 CCCACCAGGATTAGCTGTC 60 94585002 94585021 ACTGTCCACTTGTCATCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Jam2 ENSRNOG00000042848 ENSRNOT00000046973 1 1 1 80 11 24274914 24274935 GTGGAGAGTATTACTGTGAAGC 59 24274974 24275932 TGAGAACATCTACTTGCATCC 58 NA Rattus norvegicus 81 Slc25a27 ENSRNOG00000010592 ENSRNOT00000052068 1 1 1 80 9 19898487 19898505 ACACAGTGAAGCACTACCT 59 19898547 19900333 CAGAACACAAACTGGATAAGC 58 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 2 2 2 80 11 17079703 17079721 ACAGAAGAGACGAGCTCTG 59 17078661 17079661 CATCGAATTCAGCTCTTCTCG 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 2 2 2 80 X 15100792 15100908 AGCTACTCTAGAGGTGGTG 58 15100950 15100970 ATACCCATATCCATAGCCTCC 58 NA Rattus norvegicus 81 Nip30 ENSRNOG00000017841 ENSRNOT00000024120 2 1 1 80 19 10849015 10853754 CTGTGAAGCATAAGAGCTCAG 59 10853796 10853814 CTTGAGCCTTGTCATCTGG 58 NA Rattus norvegicus 81 Best4 ENSRNOG00000018749 ENSRNOT00000025346 1 1 1 80 5 136017056 136017161 CGAAACTTTCAGGTGTCCC 59 136017205 136017223 ATCCCAGTACAGATCCTGC 59 NA Rattus norvegicus 81 St13 ENSRNOG00000019070 ENSRNOT00000025925 1 1 1 80 7 122613917 122618563 CTAAATGATGGTGAGCTCCAG 59 122613857 122613875 ATACAGAATGGCCAAGCGA 60 NA Rattus norvegicus 81 St13 ENSRNOG00000019070 ENSRNOT00000025925 2 1 1 81 7 122613917 122618563 CTAAATGATGGTGAGCTCCAG 59 122613856 122613874 CATACAGAATGGCCAAGCG 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000052029 3 1 3 80 1 66010527 66011105 TTTGACCCGGTTATCATTGC 59 66011147 66011166 ACAGACACTACCTCAGAGTG 59 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 1 2 2 92 7 121311156 121328653 GTGTCTTGGGTCTTCTCCA 59 121328708 121328727 GTAGATGCAGAACTCCTCCT 59 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000050171 ENSRNOT00000048054 1 1 1 60 7 13530780 13530799 CCTCTCACCTTTCCATTGTC 58 13530739 13530757 GAACTGACGTACACTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkk2 ENSRNOG00000001309 ENSRNOT00000001774 3 1 1 81 12 39280639 39280659 CAGGTGTATCAGGAAATTGCC 59 39280702 39284854 TAGGGTCATCCAGGACCTC 60 NA Rattus norvegicus 81 Olr1370 ENSRNOG00000046347 ENSRNOT00000073401 3 1 1 60 10 12521666 12521684 CCTCTCCTGAAACTCTCCT 58 12521624 12521645 CAACAGTAAGAATCATCAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550396 ENSRNOG00000030870 ENSRNOT00000043229 3 1 1 80 4 155729805 155729825 CATTCGCCTATGTATTTGCTG 58 155728050 155729763 CTTGAGACAGAGTCGACAG 57 NA Rattus norvegicus 81 Fgf19 ENSRNOG00000020899 ENSRNOT00000028365 3 1 1 81 1 218058931 218061400 GATATACGGGCTGATTCGCT 60 218061444 218061462 CCTGTACTGGTTGTAGCCC 60 NA Rattus norvegicus 81 LOC100364523 ENSRNOG00000056519 ENSRNOT00000084780 3 1 1 80 17 4048865 4048883 AACAGGGAGAATTCCTTGG 57 4048714 4048824 CTTGAATTCTTCATCAGTCAGG 57 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 2 2 2 80 8 6901171 6904218 CAAATACTACAATCTGGCCAGG 59 6904259 6904277 ACCGCGATTGCATAAAGAC 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 3 3 6 82 12 41306150 41307123 TCTAAGGTTGTGAAGGGTGG 59 41306087 41306106 TTAAGGAACACCACCAGGTC 60 NA Rattus norvegicus 81 Emd ENSRNOG00000058882 ENSRNOT00000080990 1 1 1 80 X 156455247 156455401 ATCGGTTCTCAGACTTGGA 58 156455185 156455203 GGTAAAGTAAGGCGTCCTC 58 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 3 2 2 80 13 68754398 68756584 TGAAAGCAGAAGTACCACC 57 68754336 68754355 TGCGTTCAAGTAGAATGGAC 58 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201,ENSRNOT00000079883 3 2 2 80 4 65739924 65742319 AGGAGGAGTTCAACTTTGGAG 60 65739864 65739882 TATTGGAGATGCAGCCCAG 60 NA Rattus norvegicus 81 Fam20b ENSRNOG00000004337 ENSRNOT00000006018 1 1 1 80 13 74298640 74302393 TTTGGACAGGATTCTGGGT 59 74298578 74298597 ACAGGCTTAACTTCTGTTCG 58 NA Rattus norvegicus 81 Rab40c ENSRNOG00000020067 ENSRNOT00000027266 2 1 1 81 10 15282813 15282831 AAGGCGAGATTCTGGAGAG 59 15257865 15282774 GTAGTCTTATAGTCTATTCCGTTGC 59 NA Rattus norvegicus 81 AABR07002044.1 ENSRNOG00000048100 ENSRNOT00000029893 2 1 1 81 1 65294747 65294768 GGACTAAGTTTGGTCACAACTG 60 65294806 65295167 CGTAAGTAAGATGACAGAACTGC 60 NA Rattus norvegicus 81 Rbm19 ENSRNOG00000001397 ENSRNOT00000001891 2 1 1 80 12 41989597 41989615 CGACTCTGACTCCAACTCC 60 41986915 41989553 AGGCCTTGTTCCTCTTCAC 60 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 1 4 4 80 14 79425691 79425712 TCCATATCATGACATGTTGCAC 59 79425752 79426425 GACATGCCCTGAACATAACC 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 2 4 4 80 14 79425690 79425710 GTCCATATCATGACATGTTGC 58 79425752 79426424 ACATGCCCTGAACATAACC 58 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000071482 3 1 2 81 13 73709035 73718246 CAGAAATCGAGGTGTGACG 59 73718290 73718309 CTTTATCTGGACCCAGTCAC 58 NA InUTR Rattus norvegicus 81 Bop1 ENSRNOG00000021773 ENSRNOT00000025134 2 1 1 80 7 117515435 117515454 AGGAGCTTACGAAGAAGCTG 60 117515286 117515393 AGATGATGTTGTCACCTGCT 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821,ENSRNOT00000038396 2 2 4 80 4 167421969 167483623 ACTCAACCTGAGGAATCCA 58 167483666 167483685 CTCAGGTTGAGTTTCCTGTC 58 NA Rattus norvegicus 81 Lamc1 ENSRNOG00000002680 ENSRNOT00000003605 2 1 1 80 13 70679912 70679932 ATTTCTACAATCGGTCTTGGC 59 70679007 70679871 GATGCTCAGCAACCTTATCC 59 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 3 1 1 60 6 141715824 141715842 AGTTGTTGCTAAACTGGGT 57 141715652 141715801 TTCACCTCACACTGAATACC 57 NA DesignNoJunction Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 1 2 2 81 2 24670392 24670412 TACACTGAACTGCTGGTACTG 60 24670455 24689819 CAGATGCAAACCTGTAGCC 59 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 2 2 2 82 2 24670392 24670412 TACACTGAACTGCTGGTACTG 60 24670456 24689820 GCAGATGCAAACCTGTAGC 60 NA Rattus norvegicus 81 Ly6g5c ENSRNOG00000000846 ENSRNOT00000001122 1 1 1 80 20 5102498 5104103 ACATAAAGAACAGCAGCGG 59 5104145 5104165 GAGTATAGGAGCAATCCACCA 59 NA Rattus norvegicus 81 Rdh12 ENSRNOG00000056553 ENSRNOT00000089162 1 1 1 80 6 102392964 102392983 CTGGTTATCTTGGTACTGCT 57 102393026 102394695 ACCAGCAAAGAACTTCCTG 58 NA Rattus norvegicus 81 Ahnak2 ENSRNOG00000028545 ENSRNOT00000039631 1 1 1 60 6 137339616 137339634 AAGGGTATGTCGTGTTGGG 60 137339574 137339593 GGCATCTTGAACTTGCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacrgl ENSRNOG00000004140 ENSRNOT00000005587 3 1 1 80 14 66763535 66765692 TCTAATTACATTAGCCGAGGGTC 60 66763477 66763497 AGTAACTCCCTAAAGCCTTCC 59 NA Rattus norvegicus 81 Dgat1 ENSRNOG00000028711 ENSRNOT00000039795 1 1 1 80 7 117570982 117571001 GTATCCTGAATTGGTGCGTG 59 117568896 117569012 GGATGCCATACTTGATAAGATTCTC 60 NA Rattus norvegicus 81 Tbx5 ENSRNOG00000001399 ENSRNOT00000001893 3 1 1 81 12 42104768 42104786 GGATGCGACAACTTGTCTC 59 42104829 42108029 GAGTTCAGGATAATGTGTCCG 59 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 3 1 1 89 1 5381501 5381522 TGGAATGGTAATATTGCAGTGG 59 5381572 5387076 GTACTGAATCGCCACACCT 60 NA DesignNoJunction Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 3 2 2 81 X 16180433 16184451 ATCAGCACAGATCAGGGAG 59 16184496 16184514 CGAGGAAAGCAAACAGGAG 59 NA Rattus norvegicus 81 Med29 ENSRNOG00000019702 ENSRNOT00000026720 1 1 1 60 1 85368513 85368531 CGCTACAAGATGCTCATCC 59 85368552 85369356 CAGCAACTTTCATCAAAGTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Sh3tc1 ENSRNOG00000007993 ENSRNOT00000010784 1 1 1 80 14 80208674 80209467 CCCAGTTCATGAGGTTTGG 59 80209511 80209529 CAACGCTGAAGGACATCTC 59 NA Rattus norvegicus 81 Slc10a3 ENSRNOG00000060580 ENSRNOT00000082124 2 1 1 145 X 156336480 156336998 GGAAGCAGTTACCTTACTTTGG 59 156338536 156338555 GAATGTCCTGAGAAGGGTCC 60 NA InUTR Rattus norvegicus 81 Mybpc3 ENSRNOG00000012307 ENSRNOT00000016652 2 1 1 80 3 79957086 79957284 GACAAGAAGACCATGGAGTG 58 79957324 79957345 GCCAATGATAAGCTCTGATACC 59 NA Rattus norvegicus 81 Sycn ENSRNOG00000019879 ENSRNOT00000026907 3 1 1 83 1 85219886 85219904 CTACCCTCGACTGGAAGAG 59 85218952 85219841 CAATAGCACTTGCAGTAGAGG 59 NA Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000002927 1 1 2 60 14 6791772 6791790 TGTCTGTTGGACTGTTCCT 59 6783538 6791749 CCATCTTCATTCAGCTTTGG 57 NA DesignRelaxed Rattus norvegicus 81 LOC102546963 ENSRNOG00000042788 ENSRNOT00000066846 3 1 1 81 1 236900848 236900871 GTTATTGGACCTAAGTCATGTGAC 60 236897270 236900808 GAGGACTGACCTTGTCCAG 59 NA Rattus norvegicus 81 Yaf2 ENSRNOG00000004773 ENSRNOT00000006621 1 1 1 80 7 134507061 134507695 GTCACAAGAGAACCAGACCA 60 134507000 134507018 TCAGGTCTCCAACAGTGAC 59 NA Rattus norvegicus 81 Fmc1 ENSRNOG00000005618 ENSRNOT00000007544 2 1 1 60 4 66276986 66277004 TACCGGTACCTGGTTAAGG 58 66283725 66283744 CTCTGCACAACTTCTCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 2 2 2 81 11 27386814 27386832 TTTGGGAGATGACTCGGAG 59 27386876 27389030 CAGTTTCACCTCACAGTCCT 60 NA Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 3 2 2 82 11 27386813 27386831 GTTTGGGAGATGACTCGGA 59 27386876 27389030 CAGTTTCACCTCACAGTCCT 60 NA Rattus norvegicus 81 Fbl ENSRNOG00000019229 ENSRNOT00000026021 3 1 1 82 1 85110540 85110563 CAAGAAGAGGACCAACATTATTCC 60 85110602 85111571 CATCCACCATTGCAATAAGCA 60 NA Rattus norvegicus 81 Olr1381 ENSRNOG00000047511 ENSRNOT00000049390 2 1 1 60 10 12235539 12235558 CTCCTGAAACTCTCCTGCTC 60 12235498 12235522 CTCCCTCTGTATTAATCATCAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crisp1 ENSRNOG00000013612 ENSRNOT00000040542 3 1 1 81 9 24371373 24373652 CTCTCAGACATCTCAAACTGGA 60 24371313 24371334 ACAATTTCTTCCTGTGGTTCAG 59 NA Rattus norvegicus 81 LOC102557117 ENSRNOG00000047922 ENSRNOT00000030857 2 1 1 80 5 187370 187390 TGGATCCTTCACAGAAGAGTC 59 187428 187641 CCCAATTGTAACCTATAGCAGTG 59 NA Rattus norvegicus 81 Ppm1j ENSRNOG00000012481 ENSRNOT00000016833 3 1 1 80 2 207266540 207266561 TGGTGAAATCATTCCAATGTCC 59 207266602 207267280 GGTTTCAGAAAGCCAAGCA 59 NA Rattus norvegicus 81 Ghsr ENSRNOG00000024119 ENSRNOT00000034960 1 1 1 114 2 113067664 113069709 GAAGATGCTTGCTGTGGTG 60 113069786 113069805 GATCTGAGCGATCTCCAGAG 60 NA Rattus norvegicus 81 Elovl4 ENSRNOG00000009773 ENSRNOT00000012999 1 1 1 80 8 91316642 91319789 GACGTTAATGAAGTCAGGATAGC 59 91316584 91316605 AAACACTGTGTCCAAATACTCG 59 NA Rattus norvegicus 81 Hoxc5 ENSRNOG00000016598 ENSRNOT00000022247 3 1 1 85 7 144628625 144628643 GACCAAACTGCACATGAGC 60 144629381 144629399 CTTTCTCGAGTTCCAGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc97 ENSRNOG00000020675 ENSRNOT00000028065 2 1 1 80 1 82506790 82507066 AGTGATGAGGAAGACCAGAG 59 82506729 82506747 CTCTCGAAGGATCAGCCTC 59 NA Rattus norvegicus 81 Gpr89b ENSRNOG00000000095 ENSRNOT00000000106 1 1 1 80 2 199024086 199024755 AGTAACATCCAACTGTTGCAC 59 199024026 199024050 CTTCCAGAAGAAGTACATAAAGGTC 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315 1 1 2 80 16 10949955 10951230 TACACCTTCTGCAGGAATAGAG 59 10949896 10949915 CATAAGGAAGTCGCTGACTG 59 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 3 3 6 60 20 4611846 4611864 TTCATCGCTATGAGGAGGT 58 4612225 4612244 CAATGAAAGCCGTAGAGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Tenm2 ENSRNOG00000027341 ENSRNOT00000011922 2 1 1 80 10 20998309 21005448 GTTGTCTTAGATTCAGTGCAG 57 20998249 20998267 GAAACAGTGACACAGTCCA 58 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398,ENSRNOT00000065171 3 2 2 80 9 104803854 104805677 GATTATGATGGCCTTGGCA 58 104803792 104803812 ACTATAGTCAGTCATCGTGCA 59 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 2 1 1 81 13 83200378 83200396 GTGAGCTTAAGAACCCAGC 59 83199569 83200334 AAATTACAGCTCTCATGGCT 57 NA DesignNoJunction Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853,ENSRNOT00000049855,ENSRNOT00000045393 3 3 3 80 3 128929361 128929379 GATCGGACATTTGATCCCT 57 128929422 128930510 CCCTGATATAACCTGCACTG 58 NA Rattus norvegicus 81 Spc24 ENSRNOG00000029862 ENSRNOT00000045384 2 1 1 82 8 22780933 22781832 GATGGTCAAGGGCATTCAC 59 22780869 22780889 TGATGAACTTCTGTGAGAGCT 59 NA Rattus norvegicus 81 Mtmr4 ENSRNOG00000007496 ENSRNOT00000009943 1 1 1 80 10 74907100 74907328 ATCATTGCAGAAATTGTGGG 57 74907371 74907389 CATAGAGTTGCTGATCGGG 58 NA Rattus norvegicus 81 Mtmr4 ENSRNOG00000007496 ENSRNOT00000009943 3 1 1 80 10 74891185 74891534 AATCTTCAGGTACCCTTCACAG 60 74891574 74891593 GATTGCAATGAGGGCATCAG 60 NA Rattus norvegicus 81 Rassf3 ENSRNOG00000005388 ENSRNOT00000007295 2 1 1 80 7 63516508 63518760 ACGAAATTGGAGAGTGGGA 59 63516446 63516464 GTTCGTCCTCTTCCTTGTC 58 NA Rattus norvegicus 81 Pde8b ENSRNOG00000010280 ENSRNOT00000044087 1 1 1 80 2 24741717 24744870 TGATGACCGATGGCTTGAG 60 24741265 24741283 AGAGGTGACTGTGACTGTG 59 NA Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000085165,ENSRNOT00000027064 1 2 2 80 9 82634853 82634871 TTCTACCAGCCTGATGAGG 59 82634915 82635229 CTGCAGATACCTGACTGGA 59 NA Rattus norvegicus 81 Lrrc28 ENSRNOG00000023274 ENSRNOT00000033858 2 1 1 80 1 128501733 128501755 TTACCTTTGTCTACCCTAAGCTC 60 128487856 128501694 AGCCAATACTTGTCCTCCTC 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 2 1 2 123 16 85305323 85305428 GGAGTCAAACTCCCAACAC 58 85299028 85299046 CTGGAGTAGCTGAGAGGTC 59 NA Rattus norvegicus 81 Hoxc12 ENSRNOG00000016116 ENSRNOT00000021580 2 1 1 100 7 144548503 144548521 GTATCTCCGTTGAACCCAG 58 144549341 144549359 AACTTCGAATACGGCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Gosr2 ENSRNOG00000003506 ENSRNOT00000005046 2 1 1 80 10 91746522 91748028 AGTCTGTGCACTTAGTGGA 58 91746460 91746478 ACAGAATCTCCAGACGCTC 59 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 3 2 2 83 12 42488722 42488740 CTTACAGTACCTTCCGCAC 58 42486589 42488678 ACTGGGTTATCTTGTCATTCTG 58 NA Rattus norvegicus 81 Gnl3l ENSRNOG00000002509 ENSRNOT00000003397 2 1 1 80 X 20044956 20044976 AGAACGGAGGTGTCTATAGTC 59 20044639 20044918 TATAGAAGCTGATCTTCCCACTC 59 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 2 1 3 60 1 82833511 82833532 CATTGAATCTGCACCTAACGAG 60 82832434 82833493 TTCACCTATATCTACGAGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1060 ENSRNOG00000031181 ENSRNOT00000051063 3 1 1 60 7 9173872 9173892 TGGGTAATTGGGTTCTTAGTC 57 9173832 9173852 AGAAATCCAGTTTGAGTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il17a ENSRNOG00000012467 ENSRNOT00000016664 3 1 1 81 9 26841370 26842473 GAATTCCATCCATGTGCCT 58 26842518 26842536 CTTTGAGGGATGAGTACCG 57 NA Rattus norvegicus 81 Atp5j ENSRNOG00000001551 ENSRNOT00000002116 3 1 1 108 11 24287378 24287397 TATCAGCAAGAGGTGGACAG 59 24286912 24287310 GGACTTCAAATTTGGGATCCTC 59 NA Rattus norvegicus 81 Zbed3 ENSRNOG00000028941 ENSRNOT00000040983 1 1 1 60 2 25050481 25050499 CATCATACTCGGAGGCCTG 60 25050523 25050541 ATTCTGTGCCTAGGCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam46a ENSRNOG00000010240 ENSRNOT00000056937 3 1 1 81 8 92941239 92941257 GCTGGATTGCCTGTTAGAC 59 92940149 92941195 CACATACGCTTCCTTGAGAG 59 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000055235 2 1 3 80 1 167333189 167333208 CTTCAGTCTCAATGTGGTGG 59 167333250 167333372 TCATGGATGGTGAAGTCCTC 59 NA Rattus norvegicus 81 Adgrf4 ENSRNOG00000012535 ENSRNOT00000016906 2 1 1 81 9 20965318 20967982 CAACACAAGGTAAATGTGATGG 58 20968024 20968042 ATTTCTCCACGGAAGTTCC 58 NA Rattus norvegicus 81 Mpc2 ENSRNOG00000003150 ENSRNOT00000004206 1 1 1 80 13 83697320 83697338 GATTAGCTGACATGGCCAG 58 83697381 83698398 ACCAAATAAACCCTGTAGCC 58 NA Rattus norvegicus 81 C8a ENSRNOG00000007697 ENSRNOT00000067850 3 1 1 84 5 124359478 124359497 AGCAGTGCTATTACATACCG 58 124354876 124359431 GATAGATGGGCTGCATCTC 58 NA Rattus norvegicus 81 Kif13a ENSRNOG00000001455 ENSRNOT00000066447 1 1 1 80 17 18297565 18302390 ACAGTTACCAGGAGGAAGAC 59 18302432 18302451 CGTCTAAGTATTCCCGTCGT 59 NA Rattus norvegicus 81 Vhl ENSRNOG00000010258 ENSRNOT00000013727 3 1 1 80 4 145584482 145585518 ACATTGCCAGTGTATACCCT 59 145585560 145585579 CAGCCTCCTGTAGTTCTCAG 60 NA Rattus norvegicus 81 Akap13 ENSRNOG00000010964 ENSRNOT00000014802 1 1 1 80 1 137179714 137179734 GGAGGAGGCTATAGGAAATGG 60 137179775 137228034 CAGCTTTCTCGGTTGATCAC 59 NA Rattus norvegicus 81 Ccdc107 ENSRNOG00000017253 ENSRNOT00000023411 1 1 1 80 5 58997148 58997247 CCTCACAGTCAGAACAACAG 59 58997290 58997308 GGGTCATCAGGTTGTTCAG 58 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 1 2 2 80 6 7920208 7920227 ACCCTGAGAAGAGAAAGGTG 59 7920270 7924075 TGCTGGTAAACATCAGCGA 60 NA Rattus norvegicus 81 LOC689725 ENSRNOG00000026195 ENSRNOT00000038369 3 1 1 82 9 32868215 32868234 TCCTACTGATCCCATTCCTG 58 32866832 32868170 CCTCTTCACCACCTCTGAG 59 NA Rattus norvegicus 81 Eppin ENSRNOG00000028908 ENSRNOT00000019829 3 1 1 98 3 161048718 161048736 CTTTGTACCAGGGACAGGG 60 161045050 161048659 TAGGCTGCAAATATCTTGTTGG 59 NA Rattus norvegicus 81 Nab2 ENSRNOG00000008415 ENSRNOT00000057745 3 1 1 80 7 70967796 70967816 ATATAGCATCATCTATGGCCG 57 70967376 70967755 TCATTGATGGTCAACTCGTG 58 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481,ENSRNOT00000045373 3 2 2 80 5 5280788 5282051 CTGCAACAGAAGAACAAGCT 59 5282092 5282112 TGTAGAAGAACACTGTAGCCA 59 NA Rattus norvegicus 81 RGD1562107 ENSRNOG00000024755 ENSRNOT00000038486 1 1 1 80 9 27311964 27316080 GGAGTAGAGTTTGAGGAGGA 58 27317387 27317406 TTCATACATCAGGGTTCCAC 57 NA Rattus norvegicus 81 Atf7ip2 ENSRNOG00000025522 ENSRNOT00000039429 3 1 1 83 10 5511861 5511879 TGGAGATCCTGAACCAGTC 58 5508322 5511817 TCTTCTGATTATGGCCATTTGG 59 NA Rattus norvegicus 81 Rabep1 ENSRNOG00000005015 ENSRNOT00000041443 2 1 1 80 10 57527657 57535296 GAGGCCTCAAAGGTTAAGGA 60 57535335 57535357 AGCTACATACATCTCCAGATCAG 59 NA Rattus norvegicus 81 LOC100910145 ENSRNOG00000048588 ENSRNOT00000073523 1 1 1 60 2 35310756 35310774 CCAGCACTTACAACAACGA 58 35310797 35310816 GACACGACAATATTCATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcns2 ENSRNOG00000011369 ENSRNOT00000015707 3 1 1 236 7 73588180 73588198 ATCTACATTCTCGCACCCG 60 73588991 73589011 GCCTACATTGATTCGGATCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iapp ENSRNOG00000012417 ENSRNOT00000016614 1 1 1 63 4 176511048 176511066 TTCTCCTCATCCTCTCGGT 59 176511093 176515745 TTGGTACCACTTCCGACAG 59 NA DesignRelaxed Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 2 2 2 80 8 116829975 116833487 GGTCCATCCTCAGAGACAG 59 116829913 116829932 GAGATAGCGTATAGAGCGGA 58 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 2 2 3 88 1 66237070 66237088 AAGCCTGAAGTCATCTCCC 59 66233735 66237018 CTCATCCACTCTGGACAGC 60 NA Rattus norvegicus 81 Nr1h5 ENSRNOG00000023073 ENSRNOT00000036229 2 1 1 80 2 205441006 205441028 CCTTCTGAATACCATAGTGACTG 59 205440808 205440967 GAATACTCCTGCAGAAGTGC 59 NA Rattus norvegicus 81 Pram1 ENSRNOG00000039204 ENSRNOT00000060002 1 1 1 80 7 18511957 18512046 ACATATTGCACAGAACCCG 58 18512089 18512108 CTAGGGCTGAGACTAGAGTC 58 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 2 3 3 80 7 2470084 2470103 AGGCTGTTTCCAACATTCAG 59 2470146 2470294 CCGTTTCATCAACCTCCTC 58 NA Rattus norvegicus 81 Phf6 ENSRNOG00000048650 ENSRNOT00000072527 2 1 1 83 X 158280678 158280696 TAAAGGTCTGGCGGAAGAC 59 158280469 158280632 GGAGACCTATCTCGGTAGGA 59 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 3 2 2 80 8 94352165 94352184 TTGTCAACCAGGAGATCCAG 60 94350420 94352125 ACAGAAGATACCTGTCGAAGTC 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599,ENSRNOT00000066302 1 2 2 80 2 24154600 24161234 CGATCTGGATGACTTTAACCC 59 24161274 24161294 AGATCAGCTATCAAGCTTGGA 59 NA Rattus norvegicus 81 Abcc2 ENSRNOG00000046727 ENSRNOT00000070861 3 1 1 80 1 263556213 263556233 TTTACAGCGTGTACAGATCCA 60 263556275 263569997 GAAACACGACGAACACCTG 60 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 2 2 2 98 20 5115204 5115777 GAGAACCAGAACCGATCAC 58 5115839 5115857 CAGGTGAGCAGTAGATGTG 58 NA Rattus norvegicus 81 Fam195b ENSRNOG00000036691 ENSRNOT00000054960 3 1 1 81 10 109721257 109721955 CATTTATGAAGCCTGGCAGG 59 109721195 109721214 ATATTCCTCCACTAGGCACC 59 NA Rattus norvegicus 81 Mir148b ENSRNOG00000035525 ENSRNOT00000053648 2 1 1 60 7 144912062 144912083 AAGTTCTGTTATACACTCAGGC 58 144912103 144912122 GAGACAAAGTTCTGTGATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam122c ENSRNOG00000028011 ENSRNOT00000035398 2 1 1 81 X 157839867 157844460 CGGATTTGGTGATAATTCACAG 58 157839807 157839825 ATGCTGATTCGCAAATGGT 59 NA Rattus norvegicus 81 Fam122c ENSRNOG00000028011 ENSRNOT00000035398 3 1 1 81 X 157839866 157844459 GGATTTGGTGATAATTCACAGG 58 157839806 157839825 TATGCTGATTCGCAAATGGT 58 NA Rattus norvegicus 81 AABR07065705.3 ENSRNOG00000059199 ENSRNOT00000075502 3 1 1 135 6 139747394 139747412 TCTCAAATCCCGACTGAGC 60 139746906 139747295 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Sin3b ENSRNOG00000048622 ENSRNOT00000074814 2 1 1 80 16 18857663 18857683 TGGATACCGCATAGACATTCC 60 18852340 18857622 TGGCTATGAGAGTTGTCCTG 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000002812,ENSRNOT00000065535 3 3 3 80 11 31109187 31112874 TCACCACAGCTACAACAGG 60 31107684 31107703 TGTTGGCTCTTGTTTGACAC 59 NA Rattus norvegicus 81 Sdha ENSRNOG00000013331 ENSRNOT00000018336 1 1 1 80 1 31569591 31570260 GACTGGGAAGGTTACTTTGGA 60 31570302 31570320 GCAGGAGGTACAGTAGCAC 60 NA Rattus norvegicus 81 Sdha ENSRNOG00000013331 ENSRNOT00000018336 2 1 1 80 1 31569590 31570259 AGACTGGGAAGGTTACTTTGG 60 31570300 31570319 CAGGAGGTACAGTAGCACAG 60 NA Rattus norvegicus 81 LOC100360238 ENSRNOG00000037801 ENSRNOT00000057396 3 1 1 80 12 40555955 40555975 TTCAGAGATCGAGAAGGTTCC 59 40556014 40556059 CCTTCCTCTTCTTTGATCTCCT 59 NA Rattus norvegicus 81 Plcd1 ENSRNOG00000032238 ENSRNOT00000045493 3 1 1 80 8 127758132 127758242 GAAGATCTTCAGGGAATGTGAC 59 127758073 127758093 GTCAGCATCTTGTAGAAGGTC 59 NA Rattus norvegicus 81 Cep57 ENSRNOG00000006792 ENSRNOT00000009318 3 1 1 80 8 12337674 12338379 TGGGCAAATGAGCTTTGAC 59 12337612 12337630 TCCAGGTTGTCTTTCAGCT 59 NA Rattus norvegicus 81 Hspb8 ENSRNOG00000022392 ENSRNOT00000039275 1 1 1 82 12 45906031 45906049 AATGTGCACAGCTTCAAGC 60 45906095 45912649 TTCTCTTCGTGCTTCCCTG 60 NA Rattus norvegicus 81 Hspb8 ENSRNOG00000022392 ENSRNOT00000039275 2 1 1 192 12 45905921 45905939 TAAGGTCTGGCATGGTACC 59 45906095 45912649 TTCTCTTCGTGCTTCCCTG 60 NA Rattus norvegicus 81 Nup93 ENSRNOG00000018564 ENSRNOT00000025086 2 1 1 80 19 11169085 11169227 TTCCTCAGGGATGAGAAAGAC 59 11169025 11169046 CTCTCGACTTTCTATCACAAGC 59 NA Rattus norvegicus 81 B4galt2 ENSRNOG00000019609 ENSRNOT00000026591 1 1 1 80 5 136711867 136714946 TATGTCATCAACCAGCATGG 58 136711806 136711825 CTCTTTCAGTGCCTCTAGGA 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550,ENSRNOT00000078720 1 2 2 80 8 116376252 116376503 CAAGCAGATGAAGATCATCCA 58 116376192 116376210 GTGTTGCTGTAGACAACCG 59 NA Rattus norvegicus 81 Atf7ip ENSRNOG00000008870 ENSRNOT00000011803 1 1 1 80 4 170531962 170531980 AACCCACCCATATCACCAG 59 170532024 170535150 CACTGTGCCTGCATTTCTG 60 NA Rattus norvegicus 81 Spata32 ENSRNOG00000003275 ENSRNOT00000004371 1 1 1 80 10 91292950 91292968 GAATGACGACTACCACCAC 58 91292776 91292910 CTTGATAACTCTGTTCCCATCTC 59 NA Rattus norvegicus 81 Spata32 ENSRNOG00000003275 ENSRNOT00000004371 2 1 1 80 10 91292791 91292923 GGATGAAGACAATGAGATGGG 59 91292731 91292749 AGATGTGGTACTGGGTCTG 58 NA Rattus norvegicus 81 LOC685081 ENSRNOG00000042660 ENSRNOT00000040498 3 1 1 80 8 127911409 127911428 AACTCTACATGGTTCTGTGC 58 127911134 127911368 ACTCTGAAACAAGGATCATGG 58 NA Rattus norvegicus 81 Nkx6-1 ENSRNOG00000002149 ENSRNOT00000002928 3 1 1 82 14 9558402 9558420 AAGTACTTGGCAGGACCAG 59 9558465 9560633 TTCTGGAACCAGACCTTGAC 60 NA Rattus norvegicus 81 Prss40 ENSRNOG00000014001 ENSRNOT00000018758 3 1 1 82 9 41066498 41068952 ACTGCTTCCAAATGTCTCGA 60 41066435 41066453 GCTATACCTGGTGGGACTG 59 NA Rattus norvegicus 81 E2f7 ENSRNOG00000026252 ENSRNOT00000031986 2 1 1 80 7 53294809 53294828 AAAGATGGGTCTCCAGATCC 59 53294870 53296259 ACTGTTTGCAGATGAAGAGG 58 NA Rattus norvegicus 81 Tmem33 ENSRNOG00000002254 ENSRNOT00000003128 1 1 1 81 14 42552759 42555639 CTCCTACCCAGTTACAATGAG 58 42552698 42552719 CAGGACCTTCTTAGTGTATGTG 58 NA Rattus norvegicus 81 Fam150a ENSRNOG00000048703 ENSRNOT00000073694 3 1 1 84 5 12898119 12900712 AAAGCATTTCACAGGACCTG 59 12898054 12898074 CGAGCAATCTCTGGTATTGTG 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 2 3 3 80 3 22884844 22887244 CTACTCTGAGAAGCTTCGG 57 22887287 22887306 TGCACATACTCAATGTCAGG 58 NA Rattus norvegicus 81 Sars2 ENSRNOG00000019962 ENSRNOT00000027166 1 1 1 82 1 86931808 86931914 TCACTTCGCTAAGGTGGAG 59 86931960 86931978 GAGACAGGAACTCCTCCAG 59 NA Rattus norvegicus 81 Fem1a ENSRNOG00000050646 ENSRNOT00000072771 1 1 1 60 9 10800004 10800022 AAGCCCTCATCACAGATCC 59 10799962 10799980 ATCCTCTCCCGTATCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir423 ENSRNOG00000035537 ENSRNOT00000053660 2 1 1 83 10 63098362 63098381 AAAGGAAGTTAGGCTGAGGG 60 63098427 63098445 TAGGAAGCAAGACTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msc ENSRNOG00000007540 ENSRNOT00000009908 1 1 1 69 5 3955723 3955741 AGGATAGCTATGTGCACCC 59 3956508 3956526 GTATCAGAGTCTGGGCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733,ENSRNOT00000085987 1 2 2 80 20 44581245 44588536 AATATTGAACAGCTCGGAAGG 59 44588575 44588596 TAGTTGCTAGGAATGTAACCAG 58 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 1 3 3 86 12 37880291 37881536 GATAACAGACATCATCGACATCG 60 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 3 3 3 90 12 37880287 37881531 AGCTGATAACAGACATCATCGA 60 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Rtcb ENSRNOG00000004813 ENSRNOT00000006570 2 1 1 80 7 23929554 23929572 CTTAGACAAGCTGGCAGAC 58 23929614 23932739 TATGATTCTGGAGCCTCTTCC 59 NA Rattus norvegicus 81 Rtcb ENSRNOG00000004813 ENSRNOT00000006570 3 1 1 80 7 23921759 23921777 GCCCAAGCTATGTTTGACC 59 23921821 23923983 CTCCTCCAAGTCTTTGGCA 60 NA Rattus norvegicus 81 Pla2g1b ENSRNOG00000001153 ENSRNOT00000001525 2 1 1 83 12 46882288 46883190 ACGACTTAGACAGGTGCTG 60 46882223 46882243 TGTCGATGAGGAATTTACAGC 59 NA Rattus norvegicus 81 Cx3cr1 ENSRNOG00000018509 ENSRNOT00000025019 2 1 1 60 8 128741850 128741868 GAATCTGTTGGTGGTCCTC 58 128741808 128741827 GATGTCAGTGATGCTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051535.1 ENSRNOG00000049499 ENSRNOT00000073229 3 1 1 91 3 16590285 16590506 GGTCTCTGGTACATTTGGG 58 16590561 16590579 ACTTGCAGCTCATAGTCAC 58 NA Rattus norvegicus 81 Slc9a6 ENSRNOG00000000879 ENSRNOT00000066809 3 1 1 80 X 159031105 159035838 AACATTTGGGTGTTCCTGAC 59 159035881 159035899 CGAAGTTGTACCACATCCG 59 NA Rattus norvegicus 81 Slco1a1 ENSRNOG00000036984 ENSRNOT00000049154 1 1 1 80 4 176200944 176204480 TCTTCATGGGCAGATACGA 58 176200882 176200901 TCTCCATACACAAGAAGCTG 57 NA Rattus norvegicus 81 Galm ENSRNOG00000007023 ENSRNOT00000009221 1 1 1 80 6 2816062 2824858 ATTTGATAAGGTCCTCTGGACTC 60 2824898 2824916 CCTTCCTCACCATCTGGAC 60 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892,ENSRNOT00000048140 2 2 2 80 10 89659199 89659220 TGCTTTCCAAAGAAGAGTTTCC 60 89659257 89661282 GATCCTCATCTTCTTCATCATCC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526,ENSRNOT00000016454 1 2 2 80 1 229078899 229078918 TAGGAAACTGTTCCCTTCCC 59 229078958 229079821 ATCTCTTGATTGATAGCCTTGG 58 NA Rattus norvegicus 81 Scn10a ENSRNOG00000032473 ENSRNOT00000046864 2 1 1 80 8 128355826 128355846 GCTACTTGAACGAACCTTTCC 60 128348013 128355786 CTTCAAGCTCCTCAATGACAG 59 NA Rattus norvegicus 81 Scn10a ENSRNOG00000032473 ENSRNOT00000046864 3 1 1 80 8 128355824 128355844 TACTTGAACGAACCTTTCCGA 60 128348011 128355784 CTCTTCAAGCTCCTCAATGAC 59 NA Rattus norvegicus 81 Tmem213 ENSRNOG00000013616 ENSRNOT00000018331 2 1 1 107 4 65801622 65801641 ACCTCCTTCTACTTGTGCTG 60 65806281 65807206 GAAGTCGACGTTAGCACAC 59 NA Rattus norvegicus 81 Bcap31 ENSRNOG00000055756 ENSRNOT00000091792 3 1 1 80 X 157098353 157098371 GTTGGTAGTGACCTATGGC 58 157098414 157104538 TCACGTACAGCATCAATGAC 58 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076179 3 1 2 60 1 134993348 134993369 AAGACTGGAGAAAGGAAATGAC 58 134993387 134993408 CATTTGCTTAGGTTGGTAATCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcrlb ENSRNOG00000003135 ENSRNOT00000004181 3 1 1 86 13 89290698 89291060 GGAAAGCTGCTACTCTGGA 59 89290630 89290648 ATCTCAGGGTTACTCGCTC 59 NA Rattus norvegicus 81 Gys2 ENSRNOG00000059753 ENSRNOT00000090122 2 1 1 80 4 176642955 176642973 ACATCTGACACTGAGCAGG 59 176639607 176642912 TACTTAAAGCCATCCGTCGT 59 NA Rattus norvegicus 81 Sim2 ENSRNOG00000054203 ENSRNOT00000081834 1 1 1 80 11 34350823 34350844 ACTAGGAAATCAGCTAAACCCA 59 34350885 34351303 GCTGTATTGCTGTGAGGGA 60 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 1 3 3 80 12 39866829 39867599 GCTGTCATGGAGGTTTATCAC 59 39866769 39866789 GATCTGGTACATCAGTTGGTC 58 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 2 3 3 80 12 39866826 39867596 GTCATGGAGGTTTATCACCAG 59 39866766 39866787 CTTGATCTGGTACATCAGTTGG 59 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 3 1 1 76 10 17375113 17389906 AACATAACACTACCACACGG 58 17389945 17389963 CAATAGACTGGCAGCTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 3 2 2 83 9 41007334 41007353 CTACAAGCCCTCACAAACAC 59 41007398 41008032 TTGCCACAGATTTCCTTCTG 59 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050,ENSRNOT00000042082 1 2 2 80 9 98421789 98422945 CGTTAAAGGATGTTGTTTGGG 58 98425521 98425540 CAGCTTCAATGTTCAGTGGA 59 NA Rattus norvegicus 81 Srsf6 ENSRNOG00000006380 ENSRNOT00000008427 1 1 1 80 3 159307246 159307266 CCTGTTCGTACAGAATACAGG 58 159307306 159307427 CCGCATGAAATCCTTTAAGTC 58 NA Rattus norvegicus 81 Neurl3 ENSRNOG00000015366 ENSRNOT00000038610 3 1 1 87 9 42835570 42835588 CACGAAAGCCATTGAGCTG 60 42832304 42835000 TCCTGATGTGACTTCAGACTC 59 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000082631,ENSRNOT00000024036 2 2 2 123 2 209446116 209446134 GCAAACGTTGTGATGAAGG 58 209446980 209446999 TCATGACCATGTCACTAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 2 2 2 92 10 56826113 56826218 CTCTGTCAGGCTTCCTAAGG 60 56826272 56826291 TGTAGATGAAGCTGCCAGAG 60 NA Rattus norvegicus 81 Dgkq ENSRNOG00000024112 ENSRNOT00000032056 1 1 1 80 14 2074326 2074419 ACGATTATGACACGTATCACC 58 2074459 2074479 AAGTCTTCCTACAGACCTCAC 59 NA Rattus norvegicus 81 Zfp341 ENSRNOG00000017086 ENSRNOT00000047286 1 1 1 87 3 150148897 150148916 GCTACCAACAGCATCTACAC 59 150148966 150150273 TGTATGTGGAGATCTGGCG 59 NA Rattus norvegicus 81 Aipl1 ENSRNOG00000007889 ENSRNOT00000010533 3 1 1 80 10 58601373 58601464 CTTCAGACCAAGGAGAAGC 58 58601311 58601330 GCAGTAGTTGAGGATCAGTG 58 NA Rattus norvegicus 81 Syde1 ENSRNOG00000007307 ENSRNOT00000009606 3 1 1 83 7 14041681 14041699 GAGATGCCTTTGAGCAGGA 60 14041746 14041973 TGAGGATGCCTGTGATGAC 60 NA Rattus norvegicus 81 LOC100911224 ENSRNOG00000046455 ENSRNOT00000072367 2 1 1 86 1 68265759 68265780 TCTTGATGAGACTCAGAAGCTC 60 68263813 68265712 GTTCTATGCCCACAACCCT 60 NA Rattus norvegicus 81 Spcs3 ENSRNOG00000038933 ENSRNOT00000067375 3 1 1 88 16 40054501 40054520 GGTGATAATCCAAAGCTGCT 58 40054570 40055958 ACATTCCTGTTTCCCTTGAG 58 NA Rattus norvegicus 81 Uox ENSRNOG00000016339 ENSRNOT00000021970 3 1 1 80 2 252483097 252483116 GTGAATACTCACCTTCCGTG 58 252483157 252485091 TGTCTTCTATCTCAGGAAGCT 58 NA Rattus norvegicus 81 Olr956 ENSRNOG00000053663 ENSRNOT00000085061 3 1 1 60 7 6753558 6753579 TCTTAAACCATCAGTCAAGCAG 59 6753519 6753540 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eps8l3 ENSRNOG00000048209 ENSRNOT00000074806 1 1 1 80 2 210679817 210680136 ACAGTCATCCTTTAGGGCTC 59 210680178 210680197 AAGTTCTCTGCTTGTAGCCA 59 NA Rattus norvegicus 81 Lamtor5 ENSRNOG00000018186 ENSRNOT00000024473 3 1 1 94 2 210037291 210037310 TGATATCTGTTCTCGCCCAG 59 210037362 210039016 CATAACATTCCCGTTATCTGACTC 60 NA Rattus norvegicus 81 Zfp295 ENSRNOG00000001623 ENSRNOT00000041177 2 1 1 88 11 38446703 38446721 AGAACTGTGAAGAGGGCAG 59 38446045 38446651 GTTGCCTTGCTCAAACTCC 60 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 2 2 3 81 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228638 47228661 ATCATATTCTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Mettl6 ENSRNOG00000057372 ENSRNOT00000084645 3 1 1 81 16 7581459 7586019 CTACGTGAAGCAACATCCT 58 7581396 7581417 GTCAAGAAGGTCATCTCTAGTG 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 2 2 2 81 1 89353353 89354513 CTGAGCGTCATGTATGCAC 59 89353290 89353308 ACAGGATGGAGACTGTCTC 58 NA Rattus norvegicus 81 Olr1262 ENSRNOG00000045981 ENSRNOT00000072858 1 1 1 60 2 46140484 46140506 GGTTCTAGCAAATGGTTCTACTG 60 46140526 46140544 AGGCTGGTCTGTTAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 1 2 2 80 10 89470620 89471501 TAACACCCTCATGCTTCCT 58 89471545 89471563 GGCAAATTCTCATCCACGA 58 NA Rattus norvegicus 81 Cryzl1 ENSRNOG00000028014 ENSRNOT00000033745 2 1 1 80 11 31855555 31855573 CAAGGTGATCTCAACAGCA 58 31853234 31855511 TCAATCACTCGGGCTAGAG 59 NA Rattus norvegicus 81 Spon2 ENSRNOG00000006033 ENSRNOT00000008262 3 1 1 92 14 82820544 82821147 AGTGACTGAGATAACCGCC 59 82821203 82821221 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 Ptov1 ENSRNOG00000020358 ENSRNOT00000027580 3 1 1 107 1 100861156 100861174 AGTCATGGAGTGGCAAGAG 59 100860903 100861009 CACTGATCCGTTCTCAGGA 59 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 1 2 2 130 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702047 21702065 TGAATTGCTGCCTTTGCTC 59 NA Rattus norvegicus 81 Cox6c1 ENSRNOG00000032602 ENSRNOT00000043529 1 1 1 60 19 56983197 56983218 TTCTACAGGAATCATGATCCCA 59 56983158 56983176 GAAAGACTCCAGCCTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps33a ENSRNOG00000056889 ENSRNOT00000090343 3 1 1 81 12 38461350 38461848 CACTACTAAAGGAACATGAAGTGG 60 38461885 38461906 ATGATATTCTTGACATCAGCCG 59 NA Rattus norvegicus 81 Dcaf6 ENSRNOG00000003078 ENSRNOT00000004199 2 1 1 80 13 83636173 83636192 GTGGTTTGAAGAAGCAAGTG 58 83634505 83636130 GGCTCATTTGTTCCACCTC 59 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 3 2 2 81 12 40624633 40624651 GAGTTTAAGCGTCTGGCTG 59 40624694 40625102 TGTCACCATAGTCTGAGATCC 59 NA Rattus norvegicus 81 Krtap16-1 ENSRNOG00000061192 ENSRNOT00000071896 1 1 1 60 10 87919317 87919335 CTTCTTACTCCTACCGCCC 59 87919275 87919293 TTATCGCTGTCAGAATCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smchd1 ENSRNOG00000014319 ENSRNOT00000019359 1 1 1 80 9 119680783 119680801 TGAAGAGGAAGAAGCAGGA 58 119680111 119680739 GCATAGGAGTCATTCCGAG 58 NA Rattus norvegicus 81 Olr67 ENSRNOG00000034083 ENSRNOT00000051894 2 1 1 60 1 168118387 168118411 CCCATTGTGTACTGTATAAAGACTC 59 168118427 168118447 TAACCAACTTTCCCAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 1 2 2 81 7 59302553 59304080 GTCTTGAAGCGAGGAAGTC 58 59304125 59304143 CACTGTCTGGAGTCTTGTG 58 NA Rattus norvegicus 81 Adprhl2 ENSRNOG00000010849 ENSRNOT00000014586 3 1 1 81 5 144341374 144341392 GACGTCTGTCCTGAGTCAC 60 144338956 144341332 GTAGTACAATGTTTCTGTCCGC 60 NA Rattus norvegicus 81 Cd3g ENSRNOG00000015945 ENSRNOT00000021390 1 1 1 80 8 49275474 49277569 GTCAAGAGCTTCAGACAAGC 59 49275012 49275032 TACTGTTCATATTCCCGGTCC 59 NA Rattus norvegicus 81 AABR07012583.4 ENSRNOG00000060366 ENSRNOT00000085945 1 1 1 164 2 198417780 198417798 CTACCAGAAGTCGACCGAG 59 198417926 198417944 TTGGTGTCCTCGAACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 3 3 3 80 7 61183069 61184372 CAGAGAAGAAGGCAGACGA 59 61184415 61184434 CAGGCTTCTTTATAGGCTGG 58 NA Rattus norvegicus 81 Plxnb3 ENSRNOG00000061731 ENSRNOT00000080088 1 1 1 80 X 157024571 157024677 CAGGCTCAGATCATGTCAC 58 157024509 157024529 CATAGAAGGAGAATGTGGTGG 58 NA Rattus norvegicus 81 Zfp207 ENSRNOG00000000236 ENSRNOT00000000253 2 1 1 80 10 67774320 67774440 ACCTCATGGTCAGTATGGTG 59 67774483 67774501 GGTCCCTGTCCATATGGTG 60 NA Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 1 2 2 78 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726050 139726068 TCTCTGCTGCATAGTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07052585.1 ENSRNOG00000022637 ENSRNOT00000030978 3 1 1 80 3 63831550 63831570 GACCTATTCTGTAAACGCCAC 59 63831016 63831510 ACTACTTCTTCACCTTGGACC 60 NA Rattus norvegicus 81 Shroom4 ENSRNOG00000002959 ENSRNOT00000003971 3 1 1 81 X 16763620 16765858 CAACACAAGTGACGTGAGTG 60 16763558 16763576 CATGCTGCCAATAGAGCTG 59 NA Rattus norvegicus 81 RGD1559955 ENSRNOG00000032765 ENSRNOT00000046179 2 1 1 60 9 106914153 106914171 GTCACGCATCTGATGAAGC 59 106914111 106914129 GCAACTTGATGGAGATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1082 ENSRNOG00000058943 ENSRNOT00000079450 3 1 1 60 7 13553215 13553234 TCTCACCTTTCCATTGTCTC 57 13553174 13553192 CAGAACTGACGTACACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230,ENSRNOT00000084012 3 2 2 81 7 70368333 70368498 GAGAAGCCTGAGAGTGAGC 60 70368543 70368561 CTGCTTCCTCTCGGATCAG 60 NA Rattus norvegicus 81 LOC499584 ENSRNOG00000033028 ENSRNOT00000040463 1 1 1 80 2 110306392 110307052 AAAGAAAGGCAAAGCAAGAC 58 110307095 110307113 TCCTCCTCATTTCCTCCTC 58 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879,ENSRNOT00000028277 3 2 2 82 10 89991036 89994069 CTTGAAACCTCGTTGCCAG 60 89994114 89994133 TTTCTGAGACATTCGGGAGG 60 NA Rattus norvegicus 81 Ces1a ENSRNOG00000039725 ENSRNOT00000060929 2 1 1 80 19 15353611 15355150 CCCTGAAGATGAAATTCTTTGC 58 15358903 15358923 CATCAATCACAGTTGTCAGGA 58 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 3 3 3 85 8 78371052 78371070 TGCACCAATTGGAAACCTC 59 78359520 78371003 GATGAGTTCCGACCATCGA 59 NA Rattus norvegicus 81 Poc1a ENSRNOG00000037295 ENSRNOT00000038166 3 1 1 81 8 115010054 115010073 ACACCGTTGATTATGGAGAC 58 115010117 115031134 AAATCCATTTCTGGCGGAG 58 NA Rattus norvegicus 81 LOC499886 ENSRNOG00000037081 ENSRNOT00000055882 1 1 1 80 3 121132442 121132738 GGTGACCGACAAGTATCTG 58 121132780 121132800 ATCCTGTTGTAGAGATGTCCA 58 NA Rattus norvegicus 81 Spns3 ENSRNOG00000015873 ENSRNOT00000041886 2 1 1 80 10 59098923 59099958 CTCCTACCAGTATTCCTGGC 59 59098862 59098880 GGTGCAATGGTGGAATAGC 59 NA Rattus norvegicus 81 Lyg1 ENSRNOG00000047233 ENSRNOT00000074343 2 1 1 80 9 44608863 44609554 CCTGAGTTACTGTGGAGTCC 60 44608802 44608821 ATGGTGGGTTGGTATCTCAG 59 NA Rattus norvegicus 81 Ahdc1 ENSRNOG00000042855 ENSRNOT00000067939 1 1 1 80 5 151266401 151266419 ACATTTACCGTCACCTCCC 59 151266463 151276531 TGGTCTTCTGAAAGCCAGG 60 NA InUTR Rattus norvegicus 81 Tmem131 ENSRNOG00000017265 ENSRNOT00000023550 2 1 1 80 9 43399946 43403128 GAAACTGTGGGAGATCCCT 59 43399884 43399904 GTGTGATTGTCTGCATCTCTG 59 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000067975,ENSRNOT00000080557,ENSRNOT00000000821 2 4 4 80 12 48164252 48164270 ATATTCGATGTCCTGCCCA 59 48162027 48164209 TCTCCTCACATAAACCTCCA 58 NA Rattus norvegicus 81 Itga5 ENSRNOG00000057451 ENSRNOT00000087748 2 1 1 80 7 144982953 144982971 CTCCGTCTATGATGACAGC 58 144982592 144982716 GCAACAAAGTCTTCTGTGTC 58 NA Rattus norvegicus 81 Slc25a4 ENSRNOG00000010830 ENSRNOT00000014704 1 1 1 81 16 49269444 49269464 CTGGTGTCCTATCCATTTGAC 59 49269505 49270274 CCGTGTACATAATATCAGCCC 59 NA Rattus norvegicus 81 Zfp563 ENSRNOG00000030273 ENSRNOT00000066520 1 1 1 80 7 15422541 15422559 TCCTTCCCAGAAGCAACTC 59 15422599 15422799 CCTTCCTCAATTTGTCCTATAGC 59 NA Rattus norvegicus 81 Fbxo22 ENSRNOG00000022702 ENSRNOT00000020309 2 1 1 80 8 59782617 59782637 GCAACATGAACATCATCTTGG 58 59782676 59785104 CAATATCCAGAGGGTTCTTCTC 58 NA Rattus norvegicus 81 Ppy ENSRNOG00000020874 ENSRNOT00000028318 1 1 1 82 10 90042152 90042170 ATGCTACGCATGAACAGAG 58 90041904 90042106 CTTCCCATACCTAGGCCTG 59 NA Rattus norvegicus 81 Tceal5 ENSRNOG00000046280 ENSRNOT00000073529 2 1 1 60 X 106747238 106747257 GAAGGGCAGAAGATGAAGGA 60 106747197 106747217 TCTGACTTGTCTTCATCTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561145 ENSRNOG00000042628 ENSRNOT00000067761 2 1 1 82 16 9042021 9043570 ACTGAGATCGATTTCAAGTACG 58 9043613 9043631 CAAATCTTCAGGGCAAGGA 58 NA Rattus norvegicus 81 Rn60_10_0878.5 ENSRNOG00000051174 ENSRNOT00000076574 3 1 1 60 10 87946682 87946702 CTTCCAATGCATGTGATAAGC 58 87946642 87946660 GGTCTTGTGACACAAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xylb ENSRNOG00000014168 ENSRNOT00000019106 3 1 1 87 8 128045548 128045566 AAGTCGTTGCTGTTGATGC 60 128045617 128047938 CCCTGAGTTCCAAATTCCG 59 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343,ENSRNOT00000067996 1 2 2 80 8 96514706 96514726 CACCTGAACATACAACTGTCC 59 96513800 96514667 CTCTTCTATGATCCACCTTCAC 58 NA Rattus norvegicus 81 Zfp366 ENSRNOG00000017249 ENSRNOT00000023180 2 1 1 86 2 29480237 29480255 CCTACATCTGCTCCGAGTG 60 29480305 29484264 GCTCTTTCACACCCTTGTG 59 NA Rattus norvegicus 81 Ybx2 ENSRNOG00000017117 ENSRNOT00000023003 3 1 1 82 10 56551423 56551441 AAACCGTCCCTACTTCCAG 59 56551487 56551796 TGATAGGTGCTGAGGTCTC 58 NA Rattus norvegicus 81 Map10 ENSRNOG00000028652 ENSRNOT00000031717 1 1 1 60 19 58508215 58508233 AAGATCAGGAGGAGACAGG 58 58508257 58508275 ATGACTTGTGACCAGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr81 ENSRNOG00000048540 ENSRNOT00000043806 1 1 1 60 1 168294581 168294601 CTCTATTTGGTCATTCCTCCC 58 168294623 168294641 TCTGCTTTGTTCTCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909434 ENSRNOG00000047473 ENSRNOT00000032351 2 1 1 60 2 182798459 182798477 CCATCCTTCAGCATCAACC 59 182798497 182798519 CTCTGTCTAGAGCTCTAGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx1 ENSRNOG00000001520 ENSRNOT00000002078 1 1 1 80 3 58166583 58166601 TCAGTACCTAGCTCTGCCT 59 58166642 58167843 TGGAACCATATCTTGACCTGAG 60 NA Rattus norvegicus 81 Dlx1 ENSRNOG00000001520 ENSRNOT00000002078 2 1 1 80 3 58166576 58166596 AACAAACTCAGTACCTAGCTC 58 58166636 58167836 ATATCTTGACCTGAGTCTGTG 57 NA Rattus norvegicus 81 Ttc21b ENSRNOG00000005868 ENSRNOT00000007832 3 1 1 80 3 52356497 52356519 GGATGAAGAAGTATAGCAGTGAC 59 52356344 52356458 CTTCTTGAGCTTTACCCTCC 58 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649,ENSRNOT00000016596 3 2 2 80 2 34268218 34268240 GAAGAAGCTTGTCAAACTAGTCC 60 34268280 34268828 TACTGAGTGCTTGTGACCC 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068,ENSRNOT00000081570 3 3 3 88 14 80985662 80987124 AGAGGGAAAGTGTCCACAG 59 80985592 80985610 ATAGCCGAGTGGTTTCTGG 60 NA Rattus norvegicus 81 Ppp1r32 ENSRNOG00000020620 ENSRNOT00000028003 1 1 1 80 1 226522480 226522811 CTCCAAACCATCCAGATCTC 58 226522419 226522437 TCTTGGTAGACTCTTCCGT 57 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 3 2 2 80 2 210448739 210448760 GAGTCAGAAGATGATTTCTGGT 58 210447883 210448700 ATCATCCAGGATCATGTTAGC 58 NA Rattus norvegicus 81 Cst11 ENSRNOG00000004808 ENSRNOT00000006427 3 1 1 81 3 143097867 143098553 AGATTGAGAAGCAGATGACGA 59 143097806 143097824 TTCTCTGTCTTCAGGCAGG 59 NA Rattus norvegicus 81 Smc2 ENSRNOG00000022325 ENSRNOT00000066226 3 1 1 80 5 68738227 68739801 TCGCTCAGAATCTTGTTGG 58 68739845 68739863 TCGCTTTCTGAAGTTCTGG 58 NA Rattus norvegicus 81 AABR07041141.1 ENSRNOG00000061620 ENSRNOT00000080863 1 1 1 60 X 120521848 120521866 TCAGGTAACGCAGTTTGTC 58 120521806 120521824 AACCAGCTGAATTGAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr72 ENSRNOG00000047528 ENSRNOT00000075135 1 1 1 60 1 168176418 168176438 TCGCCTCAAGTTCTTTAACAC 59 168176378 168176397 CACGTAGAAGATGAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516,ENSRNOT00000061515,ENSRNOT00000061513,ENSRNOT00000084506 1 5 5 80 13 34554492 34560100 TTGTGATATCGTGTCCCGAG 60 34560143 34560161 CTGCCTCCTTCTACCTCAC 59 NA Rattus norvegicus 81 Lgi4 ENSRNOG00000021087 ENSRNOT00000028632 2 1 1 80 1 89493392 89493411 CCTCTTCACGTCCAATACCT 59 89493452 89495394 TCAATGAAGAGGTACTGCAGG 60 NA Rattus norvegicus 81 Samt2 ENSRNOG00000046569 ENSRNOT00000065084 3 1 1 60 X 21944832 21944851 CTCTTGACTTTCCACCAACC 59 21944791 21944811 GTGCTGTGTTTCTTAATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d10c ENSRNOG00000021510 ENSRNOT00000029237 1 1 1 148 1 219432666 219432959 CTTCATGTCCCAGGTACAC 58 219432536 219432554 ACTCAAAGATGGCTTGAGC 58 NA Rattus norvegicus 81 Qars ENSRNOG00000060912 ENSRNOT00000082628 1 1 1 80 8 117304648 117304760 CTCTATGAGCGACTATTCCAG 58 117304802 117304820 CGGGTTCAAGTCACTTAGG 58 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 2 2 2 81 1 70260159 70260181 CCAAAGAGAATGATACTCCTGGA 60 70260222 70264200 GTCTTCTTCCCTGCAGAGG 60 NA Rattus norvegicus 81 Dpy19l2 ENSRNOG00000045585 ENSRNOT00000071884 3 1 1 80 8 25809089 25809111 GATAGAAAGTAAGACCTGCTGGA 60 25806849 25809049 GGGTCTCCCAATCCTTCAC 60 NA Rattus norvegicus 81 Cstf2t ENSRNOG00000050289 ENSRNOT00000074100 3 1 1 60 1 249575209 249575228 GAGTACCAAGACCAGGAGAC 59 249575249 249575269 TAAATTCTCGCCCATTGAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem45b ENSRNOG00000008515 ENSRNOT00000011329 1 1 1 80 8 32568720 32568741 ACCTTTACTTCAACATTGTGCC 60 32568121 32568681 AGAAGAGAAAGCCTTCAACGA 60 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945,ENSRNOT00000056170 1 2 2 80 5 150880432 150881776 TCAAACCAGGACTATCCCA 58 150881820 150881838 GACTCCAAAGCTGGAACTG 59 NA Rattus norvegicus 81 Sybu ENSRNOG00000004200 ENSRNOT00000005584 2 1 1 80 7 83606197 83606216 CTTCTTCTCCAAGTAGCAGC 58 83604125 83606155 TATATCGTCCAGACCTCCTC 58 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000057738 3 1 2 97 14 83561892 83562974 GAGACCACTGACAAAGAGAC 58 83563034 83563052 TGACTGATCCCGATCACTG 59 NA Rattus norvegicus 81 Nhlrc2 ENSRNOG00000016948 ENSRNOT00000022788 2 1 1 80 1 277356151 277356172 GTCTATCAGTATCTGCAGAAGG 58 277356213 277359696 CAGCCATTCTAGTCCTTCC 57 NA Rattus norvegicus 81 Cntd1 ENSRNOG00000051150 ENSRNOT00000076865 2 1 1 80 10 89206349 89207313 AGTTCTAGGGTACAATGGCTG 60 89207355 89207373 AGATAGACCAGGTCGAGGA 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000087190,ENSRNOT00000089624 3 2 5 101 8 99717198 99717218 TTCAGAATGACAAGAAGGAGG 58 99717278 99723371 CCTCATCAAGAGACTTGATCTC 58 NA Rattus norvegicus 81 AABR07041973.1 ENSRNOG00000031222 ENSRNOT00000048467 2 1 1 60 X 144446434 144446453 TCCACCTTCTCATCTCATCC 59 144446476 144446494 CAACAGACTCTTCCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 1 2 2 80 2 180084961 180118760 TATCATGCCACAAGTCACAG 58 180118803 180118821 GCATTATTGAGCAGGTCCA 58 NA Rattus norvegicus 81 Fdxacb1 ENSRNOG00000010743 ENSRNOT00000065879 2 1 1 80 8 55199248 55199266 TCAGAGTCAGACTGGAGGA 59 55199308 55200020 CATTGATGGTTCTGTTCAGCT 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 1 3 3 80 8 87270532 87270550 CTAGCAAAGTGACCAGCAC 59 87268998 87270489 CTTGTCCTGACACTGATTGG 59 NA Rattus norvegicus 81 RGD1564340 ENSRNOG00000013243 ENSRNOT00000066617 2 1 1 81 3 176721958 176723274 AAGAGGAGTGCTCCTAGAC 58 176723319 176723337 AAGGAATGTGGACTGTCCA 59 NA InUTR Rattus norvegicus 81 Trhr ENSRNOG00000005048 ENSRNOT00000006783 1 1 1 80 7 83147057 83147075 CGTCACTGACACGTATGTG 59 83147118 83151678 GAACTGGGTCCATTCTTCTC 58 NA Rattus norvegicus 81 Ankar ENSRNOG00000003991 ENSRNOT00000005313 1 1 1 80 9 53066658 53068366 GCTCCATTTGTATCGGTGTG 59 53068409 53068427 GCACTGGAAAGGCATTCTC 59 NA Rattus norvegicus 81 Alas2 ENSRNOG00000000167 ENSRNOT00000000180 1 1 1 80 X 23181859 23181880 TGGTGCAGTAATGACTATTTGG 59 23181237 23181256 AGCTCCATGATCTTCGGTC 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 1 1 1 68 3 168130007 168130906 GAAACACCTCCAGAATTTAGAGG 59 168130934 168130952 ATCATCAAGCAGTCGTCGT 60 NA DesignNoJunction Rattus norvegicus 81 Mast4 ENSRNOG00000027002 ENSRNOT00000074941 1 1 1 80 2 32913228 32913248 GCGTTTATTAAGCAGCTAGTC 58 32911853 32913187 ATCAAATTCCAAGCACTCCA 58 NA Rattus norvegicus 81 Mast4 ENSRNOG00000027002 ENSRNOT00000074941 3 1 1 80 2 32913226 32913247 CGTTTATTAAGCAGCTAGTCCG 60 32911852 32913187 GATCAAATTCCAAGCACTCCA 59 NA Rattus norvegicus 81 Rnf149 ENSRNOG00000013946 ENSRNOT00000018684 3 1 1 105 9 46299137 46299155 GGCTCACAGTTTGGAAGTC 59 46294659 46298049 CATCAACATCGATTCCCTTCTC 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 1 3 3 80 1 219856717 219857179 GTGGTCTTCAAGTTCTGTGAG 59 219857221 219857239 TGGCAGGTAGTTAAGGGAG 58 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 3 2 2 80 9 44476083 44476104 TACCTACAGGAGACAGTTACAG 59 44475231 44476044 CCGAAGGAAGTTATAGAGCTG 58 NA Rattus norvegicus 81 Cabp4 ENSRNOG00000022044 ENSRNOT00000001550 3 1 1 80 1 219387187 219387608 GTTTGGAAAGGACCGTGAG 59 219387045 219387064 TCCTGGTCAGTGTCAAACTC 60 NA Rattus norvegicus 81 Nelfb ENSRNOG00000009377 ENSRNOT00000012978 1 1 1 80 3 2423220 2423243 CTGTACTATGTTCTACACATCACC 59 2415885 2423182 AAAGGTTTCCACAAGACCAG 58 NA Rattus norvegicus 81 Col5a2 ENSRNOG00000003736 ENSRNOT00000005073 2 1 1 80 9 52100280 52100298 CAGAGGTGACAGAGGTCAG 59 52099836 52100236 TCACCATTTGGACCAGGAG 59 NA Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 1 2 2 80 X 25472406 25477256 TGAAGACAAACAGTCAGCCA 60 25472345 25472363 CAGTCAGGTTGTCATGGGA 59 NA Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 3 2 2 80 X 25486939 25486958 CGGATGATGAGTTCAGTGTG 59 25477398 25486899 TACAAAGACTAACGACATTGGC 59 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805,ENSRNOT00000037559 1 2 2 80 20 54094597 54094617 AAACCAATGGATTACGGACAG 59 54058973 54094556 CCCAAGTTCCAATCTTCTCC 58 NA Rattus norvegicus 81 Olr144 ENSRNOG00000016979 ENSRNOT00000022773 3 1 1 60 1 169247650 169247669 TTCCTCCAATGCTCAATCCT 59 169247609 169247627 AGCCTCCTACGAATCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhdds ENSRNOG00000014665 ENSRNOT00000020051 1 1 1 80 5 152223155 152223174 GTTCCAAGAGTGAGGTTGAC 59 152221675 152223113 TCAGCTTCTCCTGTTCTTCC 60 NA Rattus norvegicus 81 Pus1 ENSRNOG00000037500 ENSRNOT00000056780 1 1 1 80 12 51941753 51941773 AAGGTGTGGCTAATTGATGAC 59 51941814 51944541 CCTCTTCAGTCCCAGAATCC 60 NA Rattus norvegicus 81 Asnsd1 ENSRNOG00000003942 ENSRNOT00000059233 3 1 1 80 9 53007362 53007382 TTTGCATCTAGAGGAATCGGT 59 53007423 53007653 AGTGAGAATCACCTTTGCAC 59 NA Rattus norvegicus 81 Tirap ENSRNOG00000021420 ENSRNOT00000038312 2 1 1 80 8 36385890 36385911 ATTCATGTACTATGTGGATGGC 58 36385363 36385853 GTCTCCAGATAGTGTATAACAGC 58 NA Rattus norvegicus 81 Ubqlnl ENSRNOG00000017016 ENSRNOT00000022852 1 1 1 60 1 169342356 169342374 GAGACTCTTCCCATTCCCT 58 169342314 169342334 AGACATTCCATCTCTTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sppl2c ENSRNOG00000005104 ENSRNOT00000006808 3 1 1 61 10 92247184 92248038 TGTGACCAACAGAAAGACC 58 92248063 92248081 TGAGCTGAGGTTTGAAGGA 59 NA DesignRelaxed Rattus norvegicus 81 Ube2m ENSRNOG00000027514 ENSRNOT00000031007 3 1 1 80 1 65538313 65539329 TTCAGAAGGACATTAACGAGC 59 65539371 65539389 TGAAGTTGAGGAGGTCGTC 59 NA Rattus norvegicus 81 Ubqln2 ENSRNOG00000003099 ENSRNOT00000026214 3 1 1 60 X 18725759 18725780 AGATGCAACAATTGATCCAGAG 59 18725720 18725741 ATATCTGGGTTGTTCAGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pate2 ENSRNOG00000033981 ENSRNOT00000060448 3 1 1 86 8 36851114 36851132 CATGAGATCCTGCACACTG 58 36851182 36851488 TGATACATGCTCTGCCCTC 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 2 3 3 80 5 61604368 61604387 AATTCCTACCGAGGCTTCAC 60 61604427 61606803 TTGCCTACATACCTGATAACCA 59 NA Rattus norvegicus 81 Hnf1a ENSRNOG00000001183 ENSRNOT00000001565 3 1 1 87 12 47408208 47408227 CACCCATTCTGAAAGAGCTG 59 47408277 47418698 GGGTCCTCCTGAAGAAGTG 59 NA Rattus norvegicus 81 Htr3b ENSRNOG00000006920 ENSRNOT00000009574 1 1 1 80 8 53271495 53271513 GTTTACAACTGGGCTGAGG 59 53260248 53271454 TTGATTCTGTACATCCACATCC 58 NA Rattus norvegicus 81 Olr892 ENSRNOG00000029961 ENSRNOT00000046001 1 1 1 60 7 5106142 5106162 CTAAAGATCTCCTGCTCAGAC 58 5106102 5106121 AGACAGCCACAAGTATAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 1 2 2 80 9 2210932 2210954 CTCTGAAGGACTTACTGAAAGAC 59 2210994 2229042 TGGAGGAGATCATGCTCTG 59 NA Rattus norvegicus 81 Pctp ENSRNOG00000002425 ENSRNOT00000003295 1 1 1 80 10 77498935 77498955 ATACCATCTCTACTCGCAGAC 59 77496615 77498898 CTCATAGAGTTCTTTCACGTACTG 59 NA Rattus norvegicus 81 Pctp ENSRNOG00000002425 ENSRNOT00000003295 3 1 1 80 10 77498938 77498957 GCATACCATCTCTACTCGCA 60 77496617 77498899 CATAGAGTTCTTTCACGTACTGG 59 NA Rattus norvegicus 81 Ttll13 ENSRNOG00000056362 ENSRNOT00000090006 1 1 1 80 1 142048060 142048647 AGTATCGGCCTAGATTTCACC 60 142048689 142048707 TCAGGAACACCAATGGGAC 60 NA Rattus norvegicus 81 Ttll13 ENSRNOG00000056362 ENSRNOT00000090006 3 1 1 80 1 142042306 142043129 CTGGCTTCTAGAGGTAAACCA 59 142043170 142043189 CAGAGAAGTGCGTCTTTCAC 59 NA Rattus norvegicus 81 Chrnb4 ENSRNOG00000014427 ENSRNOT00000019458 3 1 1 81 8 59615270 59615291 GATCTACAGGAAGCATTAGAGG 58 59610620 59615230 CCTCGATGACACTTTGATCTC 59 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 3 2 2 80 8 22838043 22838063 AAACCAAGAGAATGTTCGCTG 60 22837216 22838002 TCATCCTTGGTCTTGTCCAC 60 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624,ENSRNOT00000046377 1 2 2 80 1 99948451 99948566 CCCTGGATTGGGAATTACCT 59 99948390 99948411 TGTAGGCTTCGATACACTTCTC 60 NA Rattus norvegicus 81 Olr68 ENSRNOG00000015649 ENSRNOT00000020953 2 1 1 60 1 168137850 168137874 CCCATTGTGTACTGTATAAAGACTC 59 168137891 168137910 TAACCAACTTTCCCAAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119,ENSRNOT00000083009 3 2 2 80 10 78126026 78132979 ATCCAATGCAGACATTGCT 58 78125964 78125982 CGAGCAGAAGGATTTAGGG 58 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 3 3 3 80 9 51469350 51469369 CTTGGCAGTACTGAAGTGGA 60 51469411 51479677 GTGTCTTGCAAACTTCAGCT 59 NA Rattus norvegicus 81 AABR07055728.1 ENSRNOG00000032682 ENSRNOT00000004472 3 1 1 83 7 8504764 8504786 TTATGTGGCCATCAAACCTC 58 8504831 8504850 GCAAACCATGAGCTAAAGAC 58 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 1 2 2 80 2 39001979 39001998 AGATGGAAATCATGGTGGTG 58 38997842 39001936 TTCGATGAATCTGGGTTGG 58 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 3 2 2 80 2 39001973 39001993 GAAATCATGGTGGTGAATTGC 59 38997837 39001931 GCCTGTTCGATGAATCTGG 59 NA Rattus norvegicus 81 Vom1r57 ENSRNOG00000057670 ENSRNOT00000082786 2 1 1 60 1 66687988 66688012 CATCAACTCATTTCTCTATCTTCCC 60 66687952 66687971 AGTGAAGTTGATTCGTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mal2 ENSRNOG00000008615 ENSRNOT00000011485 2 1 1 88 7 94131130 94149063 TGCCTGGAGATTGTACTTGG 60 94149114 94149132 AACATGACCCATCCTTGCA 60 NA Rattus norvegicus 81 Mettl21cl1 ENSRNOG00000022762 ENSRNOT00000039313 2 1 1 81 9 51009219 51009238 TTGCTGGTCATGAGATTCAG 58 51009281 51009993 TAACATAGAACAAGGGCCGA 59 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 1 2 2 80 12 52109600 52112054 ACGGAGAGGTGAGAAACAG 59 52109538 52109556 GGTAAAGAATGGCTCGGTC 58 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515,ENSRNOT00000078891,ENSRNOT00000041655 3 3 3 80 8 96116016 96116036 TGTGGGCTCTATTCCTAAGAG 59 96113270 96115974 ACATCTGTGAGACCCTCTG 58 NA Rattus norvegicus 81 Nme1 ENSRNOG00000002693 ENSRNOT00000003658 3 1 1 85 10 81660511 81660531 ACTACATTGACCTGAAGGACC 60 81658237 81660464 CTCCCAGACCATAGCAACC 60 NA Rattus norvegicus 81 Slc9a9 ENSRNOG00000008554 ENSRNOT00000011358 2 1 1 80 8 102919128 102919150 GGATAAAGACATGACGAAGACAG 59 102919188 103019424 ATGGGTTTCAGGTATTTGTGG 59 NA Rattus norvegicus 81 Rplp0 ENSRNOG00000001148 ENSRNOT00000001518 1 1 1 80 12 46792994 46793111 TTGAAATCCTGAGCGATGTG 59 46792933 46792952 TCAACATGTTCAGCAGTGTG 59 NA Rattus norvegicus 81 Cnnm1 ENSRNOG00000016302 ENSRNOT00000021876 3 1 1 80 1 263213237 263213259 TCAGAGATCAGAGTCAAGATCTC 59 263213298 263215970 CTTAAAGGGCTCCACTTCTG 58 NA Rattus norvegicus 81 Gpr88 ENSRNOG00000026953 ENSRNOT00000037068 3 1 1 92 2 219262113 219262532 AAATCAAGCAGGCAAGTGTC 60 219262040 219262058 AGGAGTTGGTCATTCTGGC 60 NA InUTR Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231,ENSRNOT00000030891 2 2 2 81 12 48279684 48282975 CTCCTGAAAGCTCTGTCCT 59 48279621 48279639 ACATTCTCAGGACGTCCAG 59 NA Rattus norvegicus 81 S1pr1 ENSRNOG00000013683 ENSRNOT00000018318 3 1 1 60 2 218656556 218656574 ACCACCTACAAGCTCACAC 60 218656514 218656533 GAGCCACAAACATACTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000045130 1 2 3 80 7 66743127 66743146 AAGGAAACAGTAACAGACGG 58 66743189 66743843 GACAGAGGTCCTGGAAGAG 59 NA Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000001523 1 1 2 80 12 46872915 46872934 GACAAGGTTGACTTTGTGCA 59 46872977 46873328 GGAGTATACCTGCAGGGAC 59 NA Rattus norvegicus 81 Frat2 ENSRNOG00000045543 ENSRNOT00000072055 3 1 1 107 1 261089968 261089986 CTTCTCGGAGAATCCAGCA 59 261089879 261089897 TGATGAGGTTTCCGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem42 ENSRNOG00000032027 ENSRNOT00000040475 1 1 1 81 8 132106413 132106431 GTTCAACTGTATGTGCGCC 60 132106476 132107062 AATATTCACCTGGCTCCCG 60 NA Rattus norvegicus 81 Pkd1l1 ENSRNOG00000004865 ENSRNOT00000006498 1 1 1 80 14 89144748 89144766 ACCTCAACCTCCATCATCC 59 89141840 89144705 AGTCCAGTGATACCTGAGAG 58 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000085049,ENSRNOT00000064830 1 2 2 69 8 61914752 61914770 GAGATGAGCCAGAAAGCCA 60 61914701 61914719 TTCTTCCCTGGCTTCTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nupr1l ENSRNOG00000000917 ENSRNOT00000001218 1 1 1 60 12 30303941 30303959 CACTGTCGGCTTAGAAGAG 58 30303899 30303917 GAAGTCACGCAGATAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd13a ENSRNOG00000001204 ENSRNOT00000001595 2 1 1 80 12 47572483 47573027 ATTTAAGGGAGGAGACAACTGG 60 47572424 47572442 AGATCGAAGTGTTCGGTGG 60 NA Rattus norvegicus 81 Nefh ENSRNOG00000008716 ENSRNOT00000011604 2 1 1 80 14 85188513 85188531 CCAAGGAGTCACTGGAGAG 59 85187321 85188470 GAATTGCATCCTGGTAGGAG 58 NA Rattus norvegicus 81 Olr1252 ENSRNOG00000049051 ENSRNOT00000071125 1 1 1 60 8 42365249 42365267 CTTCAACTCTCCTGCACCA 60 42365207 42365228 TGCCTATAACAACAAAGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000073072 2 1 2 81 12 50393162 50396979 CATCAGGATGGATTCCCAG 57 50393099 50393117 CTCTTGGATCTCCATGGTG 57 NA Rattus norvegicus 81 Ddx4 ENSRNOG00000026686 ENSRNOT00000013035 1 1 1 80 2 44468325 44468546 AAGCAGTGATATTCAAGGTCCA 60 44468266 44468287 TAATGTGCAAAGATGGAGTCCT 60 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184,ENSRNOT00000024657 1 2 2 80 3 161459786 161459805 ATGAAGAAAGACCTGACCAC 58 161459848 161459941 ATCTGAGTGGTCCATCTCC 58 NA Rattus norvegicus 81 Asb16 ENSRNOG00000036794 ENSRNOT00000028388 1 1 1 80 10 90224081 90224099 AACGCCTATCCATGTGTCC 60 90224143 90224773 GAAGGCTTCATGTTCCTGC 59 NA Rattus norvegicus 81 Ykt6 ENSRNOG00000014785 ENSRNOT00000020693 1 1 1 80 14 86202516 86204125 ATCATTCTGCACAACACCA 58 86204166 86204187 CAGGACTTCTGATTTGGATACC 59 NA Rattus norvegicus 81 Gtf2h2 ENSRNOG00000018230 ENSRNOT00000061183 3 1 1 80 2 30506459 30506620 CTCATCAAGACCCTGAAGAC 58 30506398 30506419 AAGTACAGTACAAACTCGAACC 59 NA Rattus norvegicus 81 Zfp717 ENSRNOG00000014331 ENSRNOT00000019204 2 1 1 80 8 23282764 23282784 AAACTTAGAACAGGGACTTGG 58 23280837 23282725 CTATTCCCTTTGTCGATACCTG 59 NA Rattus norvegicus 81 Olr46 ENSRNOG00000018506 ENSRNOT00000024957 3 1 1 60 1 167759249 167759270 CTATGTTTATTGTGGTGCTGGA 59 167759285 167759309 CGTAGGATGAAGATATAAGACAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299,ENSRNOT00000085725 1 2 2 95 8 87229247 87229953 GCTTTGCTTAATCCAAGTAAGG 58 87229173 87229191 GTTAAACATGCTGTTGGCA 57 NA Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 2 2 2 80 1 255942436 255944779 CTCTTATTAAGGATACAGCCATGAG 59 255942380 255942398 AGTTGAGACAAGCTTTCGG 58 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 1 2 2 80 9 64835039 64837464 GAAATTAAGCACTTTGTCAGCG 59 64837505 64837523 CTGTTCAATGTCGCAGGAG 59 NA Rattus norvegicus 81 Sytl3 ENSRNOG00000018321 ENSRNOT00000024967 1 1 1 80 1 47266150 47266168 GAAGCAAGACACTCCTCCA 59 47266209 47272079 ACGCTAATTAAGCTTCCATGTC 59 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000092165 1 1 2 152 9 8399672 8400358 ACAGTTCCTACCGCATCAG 60 8400474 8400492 CTTCACAGAGCCTCTTTGC 59 NA InUTR Rattus norvegicus 81 Frrs1 ENSRNOG00000016351 ENSRNOT00000021988 1 1 1 80 2 220436766 220438441 CGTCCAATTTCTAGCCACAG 59 220438484 220438502 CTCGGTTGGGAAATTACGG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077561 3 5 8 83 20 4363493 4363511 ATCGGAGAGCCACTTATGC 60 4363557 4363723 CCTTCCTGTGTTCAGTTTCC 59 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452,ENSRNOT00000073469 3 2 2 80 2 44378956 44378975 GAATCTGACTTGCACTTGGA 58 44376389 44378916 TTCCCATAGGAGTAAGTCATCC 59 NA Rattus norvegicus 81 Adamts15 ENSRNOG00000009892 ENSRNOT00000013341 1 1 1 80 8 31982604 31982622 CACGTGACAAGTGTAAGCT 58 31982445 31982560 TACCATCCACCACCTTAGG 58 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 1 2 2 80 1 73730894 73730913 AGCAACAGTACTACCAGTGG 60 73729829 73730851 TCTGGTACATGCTCATGGG 59 NA Rattus norvegicus 81 Itga1 ENSRNOG00000053550 ENSRNOT00000086114 2 1 1 80 2 47209352 47209375 GAACTGGAGATGTCTATAAGTGTC 59 47204992 47209314 ATGTGTTAACTGGCAAGTCC 59 NA Rattus norvegicus 81 Blm ENSRNOG00000011213 ENSRNOT00000015065 1 1 1 80 1 142294950 142294971 GTCACTATTGTCATTTCTCCCT 58 142293201 142294911 CGTAGCTGGAATATCAAAGGA 58 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 1 1 1 65 2 42727712 42727730 TTGGACTGTGGTACTGAGG 59 42727759 42727807 CCCAATCTGCTTAGCTCGA 60 NA DesignNoJunction Rattus norvegicus 81 LOC685629 ENSRNOG00000048679 ENSRNOT00000072045 1 1 1 96 16 12174788 12174806 CACCTTCTATGTCCCTGCC 60 12174866 12175642 TTGGACAGCCGTATCACTC 60 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548 2 1 2 80 20 4487971 4488089 CCCTTTCTCAGGTTCTTCC 58 4487909 4487928 CTGCATTACGATATGGTCCC 58 NA Rattus norvegicus 81 AABR07071258.1 ENSRNOG00000023622 ENSRNOT00000039271 1 1 1 80 8 106869071 106869090 CTTATGTCCTTGGCATTGGT 58 106866315 106869031 CAAAGTCTATGTGGAAGAGCTG 59 NA Rattus norvegicus 81 A4gnt ENSRNOG00000042649 ENSRNOT00000039690 3 1 1 80 8 107859770 107865185 GTACACCAAAGTCAACAGCAG 60 107865226 107865245 TTCCAGATAATAGCCAGGCG 60 NA Rattus norvegicus 81 Npr2 ENSRNOG00000015991 ENSRNOT00000021802 3 1 1 80 5 59140137 59140353 CACTTCAAGGGAAATGTCGT 59 59140395 59140414 GAGTTCAAACAGAACTTGCC 58 NA Rattus norvegicus 81 F3 ENSRNOG00000011800 ENSRNOT00000015836 1 1 1 80 2 225319783 225319801 AAACTAACCACAAGAGCCC 58 225319843 225321377 CAATGATGAGTGTTTCTCCCA 58 NA Rattus norvegicus 81 Olr747 ENSRNOG00000046816 ENSRNOT00000047270 2 1 1 60 3 102431617 102431636 CTGAACCTTGCCATTTACAC 57 102431576 102431594 TCAGTCTTCTCATTGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad23b ENSRNOG00000016137 ENSRNOT00000021629 2 1 1 80 5 72130076 72132820 CAACAAGTGCCCTTGTGAC 60 72132863 72132882 CTTGTTCTCGTTCATAGCCC 59 NA Rattus norvegicus 81 Neil1 ENSRNOG00000018577 ENSRNOT00000058645 1 1 1 111 8 61819651 61819758 TTGTATCGGCTGAAGATCCC 60 61819329 61819347 GTTTGGCCTTGACCTTCTG 59 NA Rattus norvegicus 81 Padi1 ENSRNOG00000007067 ENSRNOT00000009921 1 1 1 80 5 159357281 159357302 GGTATCATACTTCAAGTCCCAG 58 159356602 159357240 TCAAGGGACACATCAACAG 57 NA Rattus norvegicus 81 Nr0b2 ENSRNOG00000007229 ENSRNOT00000009683 3 1 1 148 5 151776562 151778788 TATCCTCTTCAACCCAGATGTG 60 151778897 151778915 AAGCCATGAGGAGGATTCG 60 NA Rattus norvegicus 81 Nnt ENSRNOG00000026842 ENSRNOT00000033627 2 1 1 80 2 52254578 52259419 GGATTTGATACAAGAGCTGCC 60 52254518 52254536 AGACTCCTTCAAGTCCACC 59 NA Rattus norvegicus 81 Adam26a ENSRNOG00000038743 ENSRNOT00000059182 2 1 1 101 16 51749026 51750595 CACCTGATCTTATGCCAGC 58 51750660 51750678 GTCATAAGAGCAGCAGGAC 58 NA InUTR Rattus norvegicus 81 Skiv2l2 ENSRNOG00000010125 ENSRNOT00000060695 3 1 1 80 2 44759674 44761201 TTTAGATGGATTTCCTCAGGTG 58 44759615 44759633 CACAATCCCTCTGTCATCC 58 NA Rattus norvegicus 81 Tnfsf15 ENSRNOG00000008930 ENSRNOT00000011845 3 1 1 80 5 79557663 79558663 TTCAGCACAACCAGTTTACAC 59 79554365 79554385 TGTGGTACAGGAGTTTGTCTC 60 NA Rattus norvegicus 81 Olr1710 ENSRNOG00000049102 ENSRNOT00000045794 2 1 1 60 20 1198583 1198604 GTAATACCTCCAACTCTCAACC 58 1198619 1198643 CACTCTTTATGGTCTCATTTCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 1 2 2 80 8 132526435 132526866 ACATAGATTTCACAGGTCCTACTC 60 132526904 132526923 ACTTGCTCATCTTCTCCCAC 60 NA Rattus norvegicus 81 Ptafr ENSRNOG00000013231 ENSRNOT00000017687 2 1 1 88 5 150754064 150772426 CTCCTATAGGGACATACAACGT 59 150772475 150772493 CAGAATCCACACGGAAGGA 59 NA InUTR Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 3 2 2 80 8 63146089 63146109 TTACAGGGTACTACTCATGGC 59 63143292 63146051 AGGAGTTATAGTTCCTCCTTCTG 59 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 3 2 2 80 3 161806205 161806889 ATCACTGTGTCTCTGTACAC 57 161806144 161806163 CTCCAGCTTGAAGATCAGAG 58 NA Rattus norvegicus 81 Tspyl4 ENSRNOG00000000547 ENSRNOT00000000658 2 1 1 60 20 41100996 41101016 AGTTCATCTTCCAAAGCAACC 59 41101038 41101056 CGCTCGTACTCTTTGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566373 ENSRNOG00000032408 ENSRNOT00000047773 2 1 1 60 20 23466931 23466949 GGATGCTGGCCATTAAGAG 58 23466889 23466908 CCCTTTCTCTTCTTGTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sim1 ENSRNOG00000037600 ENSRNOT00000057010 2 1 1 80 20 55609973 55637044 TACGTCCTCACAGACACAG 59 55637085 55637106 ATAGGAGAAAGTGGGCTTAGAG 59 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353,ENSRNOT00000086242 2 2 2 80 3 80386298 80386317 CAGAACTACACTTGTGCCTG 59 80386358 80390313 CAGGAACTTGTCAAGACTCTG 59 NA Rattus norvegicus 81 AABR07070689.2 ENSRNOG00000060888 ENSRNOT00000057689 1 1 1 60 8 80663055 80663074 GGATGTGTTCAGAGACTCAG 58 80663097 80663115 AAACTTGACCTTGACCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pragmin ENSRNOG00000011407 ENSRNOT00000015166 2 1 1 80 16 59713768 59716344 AAGTTCCAAAGGTCAACTGG 58 59713707 59713725 CGAGGTAAACTATTGGCCC 58 NA Rattus norvegicus 81 Ccr3 ENSRNOG00000006736 ENSRNOT00000008809 2 1 1 80 8 133038388 133038443 GTCTTGCAGTATTGGCAGC 60 133038486 133038505 GACTGCAGGAAAGATCTCCA 60 NA Rattus norvegicus 81 Tmem217 ENSRNOG00000046758 ENSRNOT00000071399 1 1 1 60 20 8202740 8202759 CACTTCTTCATCTGCTGGAG 58 8202699 8202717 CTAGCATGGTGATGAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044583.1 ENSRNOG00000060674 ENSRNOT00000091856 3 1 1 82 20 11556219 11556237 TGTCTGTCTGCTCTGATGC 60 11556155 11556173 ACAGCTACAAGGCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam166a ENSRNOG00000010019 ENSRNOT00000013335 3 1 1 80 3 2440103 2440201 GGTACCACCAGCTATACCAC 60 2440243 2440262 ATCTGCCCACATCTAGTGTC 59 NA Rattus norvegicus 81 AABR07052587.1 ENSRNOG00000031935 ENSRNOT00000011342 1 1 1 88 3 64191345 64191363 CTCTACCCAAAGTTCGTGC 59 64191415 64191872 ACATGGAGTAAGGATGCCT 58 NA Rattus norvegicus 81 AABR07052587.1 ENSRNOG00000031935 ENSRNOT00000011342 2 1 1 89 3 64191345 64191363 CTCTACCCAAAGTTCGTGC 59 64191416 64191873 CACATGGAGTAAGGATGCC 58 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000018653 3 1 2 122 16 75597443 75599433 CCTTTCTGTCTTTACTCAAAGC 58 75597342 75597360 CTGACTTTACCCAGTCCAC 58 NA Rattus norvegicus 81 Cbln4 ENSRNOG00000004372 ENSRNOT00000005866 1 1 1 80 3 170036066 170039509 TTTGATCAGATCCTGGTTAACG 59 170036007 170036026 ACTGTAGATCCCTTTCCTCG 59 NA Rattus norvegicus 81 Cbln4 ENSRNOG00000004372 ENSRNOT00000005866 2 1 1 80 3 170036066 170039510 CTTTGATCAGATCCTGGTTAACG 60 170036008 170036027 CTGTAGATCCCTTTCCTCGG 59 NA Rattus norvegicus 81 Fam149a ENSRNOG00000021693 ENSRNOT00000034448 2 1 1 80 16 50085122 50085400 AAATTCTCCAGCGAGTCCC 60 50085444 50085462 GTCAGGCCATGAATTGTGG 59 NA Rattus norvegicus 81 Uchl3 ENSRNOG00000046120 ENSRNOT00000028960 2 1 1 80 3 171121586 171121981 AGATGCACTTTGAATCAGGG 58 171121525 171121543 GTCTGGCTCTTTCTTCAGG 58 NA Rattus norvegicus 81 Xkr5 ENSRNOG00000028636 ENSRNOT00000032368 2 1 1 80 16 75758043 75760979 ATTTCTGATTGGGTGTGCA 58 75761022 75761041 ATGAAGTTCTCCTGGATGTC 57 NA Rattus norvegicus 81 Plat ENSRNOG00000019018 ENSRNOT00000025763 1 1 1 80 16 74109282 74110089 ATCACAATTACTGCAGAAACCC 59 74109223 74109242 ACTCCGTGGTATACTTCCCT 60 NA Rattus norvegicus 81 Prkra ENSRNOG00000011195 ENSRNOT00000015624 3 1 1 80 3 63500722 63503595 TGCAAGTATTTGCTTTGCAG 58 63500661 63500679 CCAATTGGATTCAGCTGGT 58 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891,ENSRNOT00000020181 3 2 2 80 16 71026693 71026714 TACTTTGAAATCACTGTGGACG 59 71026754 71026993 CTGAAGGTTACCTAAGGGCT 59 NA Rattus norvegicus 81 Angpt2 ENSRNOG00000016696 ENSRNOT00000022774 3 1 1 80 16 76004281 76004300 TCTTCAAGTCAGGACTCACC 59 76004343 76009131 CACAGTAGGCCTTGACCTC 60 NA Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000075600 2 1 2 80 5 98998444 98998462 AGAGACCTTGAAGGCTGTG 59 98998504 99103022 ACTTGTAGTTTCCACATCCCT 59 NA Rattus norvegicus 81 Dlgap4 ENSRNOG00000020225 ENSRNOT00000037177 2 1 1 80 3 152844913 152844931 GTTCGATGAGCTCTACCAC 58 152844973 152845762 GGTTTCTTCTCTTCCTTCCTC 58 NA Rattus norvegicus 81 Pax7 ENSRNOG00000018739 ENSRNOT00000025488 3 1 1 81 5 158259433 158259451 ACTACCCGGACATCTACAC 58 158256099 158259388 TTACTGAACCAGACCTGGA 58 NA Rattus norvegicus 81 Rae1 ENSRNOG00000021295 ENSRNOT00000038182 3 1 1 81 3 171018613 171018632 ATCGGTTGTCTGTCTTTCAG 58 171018676 171020295 AGCAGCGAACATCATTAGC 59 NA Rattus norvegicus 81 Bpifa1 ENSRNOG00000013859 ENSRNOT00000018581 3 1 1 80 3 149627014 149627312 AAGTGAATATGCCCGTGGT 59 149627353 149627374 CTTTCATGGCTACAATCTCTGC 60 NA Rattus norvegicus 81 Psma7 ENSRNOG00000056853 ENSRNOT00000082686 1 1 1 80 3 175421723 175422389 GTCTGAAGCAGCGTTACAC 59 175421661 175421679 CATCGAAGTCGAAACCCAC 59 NA Rattus norvegicus 81 Lig4 ENSRNOG00000014605 ENSRNOT00000019615 1 1 1 113 16 85332096 85332114 ACTGGGATTTACAGGTTGC 58 85334903 85334921 GAGCACAAGTCTGCAAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547,ENSRNOT00000084299 1 2 2 80 3 66839178 66839199 CTACAGACTTATGCAAGAGGAG 58 66836274 66839139 ACTAAGTTCCGAAGATCCCTC 59 NA Rattus norvegicus 81 Efnb2 ENSRNOG00000014648 ENSRNOT00000019675 3 1 1 80 16 86669288 86670046 TGAAAGTTGGACAAGATGCA 58 86670089 86670107 TACCAGCTTCTAGCTCTGG 58 NA Rattus norvegicus 81 Cir1 ENSRNOG00000018719 ENSRNOT00000064662 2 1 1 81 3 59996635 59997829 TCCATCGCAGGACTATGTC 59 59996572 59996590 CTTCTGTTTGGTGGTGAGC 59 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 2 1 1 60 3 150155813 150156764 TTTCTCACTTCTAGTGAGTACC 57 150155774 150155793 AGTCTCTGTGTCCTGTAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 1 3 3 80 16 69884410 69884431 CACTTCCTCAGAACTACAAAGG 59 69883495 69884369 AGGCGAACAATCCTTTGGA 60 NA Rattus norvegicus 81 Tnks1bp1 ENSRNOG00000009195 ENSRNOT00000012209 3 1 1 81 3 72481958 72481976 TCTAAGTCCTGCAAGGTCC 59 72482021 72482272 ATCCTTCTGACCCTGAGGA 59 NA Rattus norvegicus 81 Chn1 ENSRNOG00000017939 ENSRNOT00000068745 1 1 1 80 3 60526390 60526408 CGTGAAAGCTCACATCACC 59 60525641 60526348 TCAGAATTCAGACCTCTGGAC 59 NA Rattus norvegicus 81 Tktl2 ENSRNOG00000014185 ENSRNOT00000018987 2 1 1 60 16 24950033 24950051 GTCTCTACAGAACACGCCA 60 24949991 24950009 TACGAATGAAGCACATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53rk ENSRNOG00000007285 ENSRNOT00000049082 1 1 1 60 3 163554988 163555008 CCTTTCTGAAGAGTTACGGTG 59 163555029 163555048 TCTAACTTCTTCAGCACTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000079262,ENSRNOT00000018697 3 2 2 97 3 176810831 176810849 TGAAGGAGCTATCTGTGCT 58 176810502 176810771 CTGCTTCACTTCCATATCCC 58 NA Rattus norvegicus 81 LOC684871 ENSRNOG00000049811 ENSRNOT00000072459 2 1 1 60 16 72389003 72389021 AACATAGACCAGGAGTCCC 58 72389045 72389063 CCTCTGCCTTCTTGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gapdh-ps2 ENSRNOG00000033057 ENSRNOT00000047750 2 1 1 60 16 25774026 25774044 CATGTTTGTGATGGGTGTG 57 25774067 25774086 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sla2 ENSRNOG00000020337 ENSRNOT00000027581 1 1 1 80 3 152954581 152998145 ACAAGCAGAAAGACAGAAGG 58 152954520 152954539 ACTCTCAGAGATAGTCTGGC 58 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963,ENSRNOT00000067508 2 2 2 80 16 81336575 81336594 CATCTTCCTGAGGTTCTTCG 58 81335059 81336532 GTCTGTGGATCCGTATGGT 59 NA Rattus norvegicus 81 RGD1564807 ENSRNOG00000031728 ENSRNOT00000057349 2 1 1 60 16 86581894 86581912 ACTTTGCAGACAATGTCCT 57 86581852 86581870 AAGGGATTGTCATACCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Marco ENSRNOG00000049303 ENSRNOT00000075773 3 1 1 81 16 85120466 85125846 GGACATAGGAATTCAAGGACAG 59 85118578 85118596 TCCAGTGTCTCCCTTTCTG 59 NA Rattus norvegicus 81 C1qtnf4 ENSRNOG00000009140 ENSRNOT00000012110 3 1 1 121 3 79717497 79717520 GGTAAACATAGGCGACTTCG 59 79717604 79717622 TCATCAGCTTCACCGACAG 60 NA Rattus norvegicus 81 LOC100360051 ENSRNOG00000039432 ENSRNOT00000060424 3 1 1 123 15 31709587 31709608 TGTGCATAACAATCTGTACTGG 59 31709852 31709870 CTTCACTTGCTCACCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07073021.1 ENSRNOG00000056364 ENSRNOT00000082771 1 1 1 80 4 82069790 82076536 CTTGCCTTCTAAGCTCAGC 59 82076580 82076598 ATGGTTAACAGGGATCCCA 58 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000031743 3 1 2 120 2 186439635 186480157 TTGTGACTTTGGCTTTGGC 60 186439533 186439552 CCAGAGTAGTTGAGGAGCAC 60 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181 2 1 2 123 3 37939191 37947211 GTTCAATCACCAGGAGCAC 59 37938649 37938671 CACATTGCTTCCTATTGTAGGAG 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 2 2 3 80 2 219096811 219096829 CACTCTTACCTGTGCACAG 58 219094646 219096770 CTTAGGGAATGAGTAGATGTCC 58 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 3 2 3 177 2 187863138 187863157 GAGTCTGAAGAGGTGGTCAG 60 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 2 2 2 82 X 156326538 156327608 TTGAGCAGCATATGAAGAACAG 59 156327649 156327669 AGGAATACAGCCTTCCATCTC 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 2 3 3 115 2 216493577 216498237 TCCCAAAGTTTGCATCCTG 58 216493480 216493498 TTGTTTAATGCTGCAGGCA 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 2 2 5 80 X 26443840 26443954 ACTGCATTAGTGCTTACCC 58 26444267 26444286 CATGGGTTCGTAACCATAGG 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843 3 2 5 80 X 26442575 26443953 CTTAAGCTATGAGGTGCTTACC 59 26444263 26444282 GGTTCGTAACCATAGGAAGG 58 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000090588 1 1 2 87 8 62930842 62931168 CATCCAGTCCAGATGGAGAG 59 62931393 62931411 AGAGGGTAGTAGAGGGCTG 60 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 1 2 2 80 1 282572316 282572334 GCCTCAGACTCAGAAGCTC 60 282572375 282572672 CTTGAAGACCTGGTTAATAGCC 59 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 2 2 3 86 15 42656260 42657861 GAGCTCCAAGAACTGTCCA 59 42657910 42657929 GGTCTTTATGTGCTTCACCC 59 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000005061 1 1 2 81 X 35721874 35721892 CTTCTAGCACTGCAAGCAG 59 35721937 35725011 TTTAGTGGTTGGCTCTGGG 60 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274 3 1 3 81 17 10623260 10623313 ACAAGCTTTGTCATCCTTGTC 59 10623199 10623218 CACTTCTTGAGGTGGTTGAG 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 2 2 3 80 13 26010249 26010267 AATTGTGGTGTAAGCGGAC 59 26010311 26011301 CAGTCTGTAAGTGCCTTGC 59 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152 3 1 2 83 11 46202500 46205909 CAGTATTCAGCTAGTTACAGCC 59 46205953 46205971 CTGGGAAGTTGGTTGTTGG 59 NA Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 2 2 2 97 1 222319568 222319589 GTATAAGAAGGACAAGCAGCTG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000024733 3 1 3 98 9 94964407 94964426 CTAGGAGAGCTCACATCCAG 59 94971878 94971931 TTCATCCTGGACACTCTGG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 1 3 7 80 11 46244233 46248741 CATTACATCTGTGCCTTTAGAGAC 60 46244176 46244197 TGTAGTTCCTCTTCACTAGGTC 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 2 2 5 80 1 87656304 87656327 CATCAGTAATTTCACTACTGGAGC 60 87656364 87656509 CAGACAGCAAATCTGGATACC 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 2 2 2 80 18 28850547 28856920 ACTCTCCTGCAAATGTCCA 59 28850485 28850504 GGATCTGGCATGTACAATCG 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 3 2 2 80 1 205715612 205715632 CTAGTTGGTTCTAACATGCCT 58 205715672 205716339 TGGTTTGTTGTTATCCCTGAG 58 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370 2 1 2 93 1 167522963 167524814 CTTGTCCATGCAGTATGCTG 59 167524870 167524888 GAGGGACTGATCATCCGAG 59 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586 1 1 2 89 17 9741299 9741317 TGAGAGTCACGACATGCTG 60 9741370 9741490 CGGGTCGAGTTGTCTAGTG 60 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 3 2 2 87 14 7029583 7029602 CGTTCTTTCCTCAGTTTCCC 59 7030621 7031136 GGTGTCAGAACCTGATTAGGA 59 NA Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 1 1 1 63 4 172128464 172128482 AAGTTCCTTCGGACTGACG 60 172134005 172134023 TTTCAAGGTCGTTCAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 1 2 2 80 6 21988516 21989624 ACAGAAGGACAGAAGGAGTC 59 21988455 21988474 CCACGTAATCCAGTAACCTG 58 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 2 2 3 65 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569122 2593682 TTGCGAATCCTAAGGAGGTC 60 NA DesignRelaxed Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 2 2 3 99 5 25579999 25583504 AGACGAATTGGAATCCCGG 60 25579918 25579936 CACAGTTACGGACGAGAGG 60 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 3 2 2 80 17 9991339 9991357 GGAGGAGCTGTTCTCACTG 60 9990996 9991297 ATTAGCCCATACAGCTCTGAG 60 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 1 2 2 80 3 130045376 130045397 AGCTTATTTCATCAGGAGAGGG 60 130045432 130048063 CTCTCAGGAAATATACGAAGTTCTG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 3 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413155 39413173 ACATGCAGGAATTGATGCA 58 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975 3 1 5 80 17 39188341 39377427 CCTCACTTCTCTGGAACAC 58 39413155 39413173 ACATGCAGGAATTGATGCA 58 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438 1 1 2 90 1 71251643 71251661 GAATGGCAACAGCTGAGTG 60 71251715 71253348 TAGGAATTCCCAGCGACAC 60 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 1 2 2 84 17 38712538 38713747 AGTTCCAACTGGAAGTACTACTG 60 38712476 38712494 ATTTCAGCCCACAGATGGT 59 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021 2 1 2 90 10 18258426 18359731 AGAACCTCAAAGGTTGTACG 58 18250381 18250399 CTGACATACGGGCATACAC 58 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 2 3 3 80 2 188141787 188141805 GGATCACACTGTCCCAGAG 60 188141848 188150580 TGCATCTCAAGTTCTCCTCC 60 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 3 1 1 60 5 140023850 140023869 TTGCCTTATGGAAACGAAGC 59 140020248 140020267 AGTGTGATCACAAACACCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000061746 2 1 2 80 6 11058499 11061306 CTCACAGTGACGAATACTCCA 60 11058439 11058459 ACTCACTGGATTTAGTAGGGC 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878 3 1 4 80 9 117657627 117657645 AGTCTCTGCTGATTCTGCG 60 117657685 117659905 GATTGTTTAGTCTCTAGGGTCGA 60 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432 3 1 2 89 4 119915819 119915837 CCTTACTTCGAGACCAGTG 57 119911848 119915767 TTCCGTTTCCTGTTTAAGGG 58 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 2 2 2 80 1 177214070 177225635 GAGAGGAGAAACAGATTCAGG 58 177225675 177225695 TTATTCTTCTCCAGAACCAGC 58 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384 3 1 2 80 1 190596351 190596369 GCCCTACCTCCAGATTAGC 59 190591277 190596307 ATCAGAACATCACCTGGCT 59 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000079335 3 1 2 80 1 190592683 190592701 TACTGAGGGAACCACAGAC 58 190591271 190592642 ACACTAATCAGAACATCACCCT 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995 1 1 2 81 1 83966413 83966748 CCACGGAAATGGCATAGTG 59 83966793 83966811 AAACTCCTTCAGTGCTCCA 59 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650,ENSRNOT00000027091 1 2 2 80 1 220244728 220244833 GCAAACAGGGAAAGAGGTG 59 220244876 220244895 GCCTCATCCTTAGCTTTGAC 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660 2 1 2 109 17 14521280 14521300 CCATATTAGAGCAGCAAGCAG 59 14521371 14521647 CATTAAGGCATGGCTGCTC 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617 2 1 2 80 20 5987487 5987505 GCTTCAGCAGATAATGCGT 59 5987548 5988750 TAGTTTCTTGCCTCATGGCT 60 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000021040 1 1 2 80 14 104499529 104500359 GTCAAGCAGTCAGACTTCAC 59 104500401 104500420 AGATGAAGCGCTAAGAAGCA 60 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 2 2 2 80 6 91557891 91557909 ACTTTAACAGCAATCGCGG 59 91557953 91560386 CCAGCCATCACTTAGTGGA 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000004010 2 1 3 80 10 35361919 35361938 ACTCCCTATGTGGTAACTCG 59 35361980 35362998 CCAGATGTCCACATTCTCCT 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 1 2 2 80 12 2549755 2549773 GGAGAAGCTGAAGAAACGG 59 2549602 2549711 AATGCTTTCACAATCGCCA 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927 1 1 2 80 18 37939314 37939332 AGAGCCGGGAATATGACTG 59 37933428 37939270 CTAGGTCACGGATCCTCTG 59 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344 3 1 2 158 17 15358008 15358026 TTTAACAGGAACTGTGGGC 58 15357282 15357889 CTAGAGACATCTTGTGTCTGAG 58 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 1 4 4 81 15 51927602 51936383 TCACCTTCAAACAAGAATGTCG 60 51927542 51927562 AGAGGAAGACAGTCGAAAGTG 60 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 2 2 2 82 20 248553 248572 TGTGAATTGTACTTGGCACC 59 250938 254199 ATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 3 2 2 83 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054948 ATAGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800 1 1 2 87 4 7358505 7373819 TTCTACCGGAAAGATGGGAG 59 7373867 7373887 GGATAAACATGATGACAGCCC 59 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 3 3 3 80 15 45505721 45505739 ATCCAGAACCTGAATGCCA 59 45503368 45505679 GGGAGTACATACTTCCTTCCC 59 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 1 2 2 80 20 7772710 7774761 ACCCAAAGAGGGCTATGAC 59 7774805 7774823 ACAGGGTGATGGATGTAGG 59 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 1 2 2 80 17 15978074 15978093 AAGACAATGGAGCGATAGAG 57 15978134 15985513 CGGAATCAATCATTTCTTGGG 58 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 2 2 2 80 14 86377164 86379591 CTTCTCTAGAAAGGCTAAGAAGG 58 86377106 86377124 GTGGGTTTAGGCTTCTTCC 58 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000078603 1 1 2 80 12 12730852 12730870 CCTAGTGACTCCGTCTGTG 59 12729168 12730808 AATGAAGCCTGAAATGCGG 59 NA Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 3 1 1 62 18 35196585 35196603 CTTCATTCGATGCTCCTGG 58 35197276 35197294 AATCAGTCCATGTGTAGGC 57 NA DesignNoJunction Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000081105 2 1 2 81 17 42634636 42634656 GGGAAGTTAGATGTGATGACC 58 42628293 42630374 CCATTTCCACAATTGCTGTG 58 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 1 3 3 89 2 231059028 231059049 GAAGAAATTTAATGCTCGACGG 59 231059986 231070096 AACAAACTCTTGGCTGCTG 59 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550 3 1 2 86 1 88955285 88955303 CCTTTGGTCACTCATGGAC 58 88955423 88955445 TCCATAAAGCTCAGAACATGC 59 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000024825 1 1 3 80 18 29480871 29482231 GTGCCTCAAACACATCCAC 60 29482275 29482293 TCTTTCGATCCTGACTGGC 60 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000024825 3 1 3 80 18 29470101 29471468 AGAGAATGATGAAGGTGTGGA 59 29471505 29471528 GCAGAGATTCCAATTGTAGTAGTG 60 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000079819 3 1 2 80 6 21091646 21091664 CAGAAGTGGTACCAAAGCC 59 21089253 21091605 CATAGTTTCGAAACACAGACTC 58 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000018147 1 1 3 83 X 62662425 62662446 CAAAGTCACTACTATGAGTCGG 58 62661624 62661744 CCATGCAACTGCATAAACAG 58 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 1 2 5 80 16 19727746 19727764 TCCTGTCACTCGAAGTCAC 59 19727807 19730707 TTATGCAAATCGCGGTACAG 59 NA Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 2 2 2 80 3 5561767 5561787 CATCTCTGGACTCTTCAACTG 58 5561826 5562856 ATAAAGGCGTTCATGATCATCC 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000083153 1 1 2 80 1 189596667 189597224 GCCTACATCTGTGATGAAGAC 59 189597265 189597284 CCGACGTTACAATCTTTGCT 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000083153 2 1 2 81 1 189619548 189621579 GTGAGAGTAACAGATGAAGTTTCC 60 189621619 189621637 GAATTCTCCGAGGCTTGTG 59 NA Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000052360,ENSRNOT00000085832 1 2 2 146 10 34524901 34534715 GGTACATGGCTACTTCCCA 59 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659 3 1 2 80 6 28747494 28750025 AAGATGGCGAAGATTTCCAG 58 28747433 28747453 ATTCTACACCTGTAATGGCTG 58 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 2 1 1 61 1 238834523 238834546 GATACTGGAGACATGGTTAATCAG 59 238834255 238834273 CCAATGCTGCAGTTCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000061780 2 1 2 82 5 16975428 16975480 GTTTCTCAAACAGTTGATTGGG 59 16973170 16973191 TGAACGAAGTCATACATGTGTC 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000028363 2 1 2 88 1 221259408 221260906 TGCCTGTGACATTTGTGGA 60 221259338 221259356 CTCCTTCCTCTTCAGCCAG 60 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000051480 3 1 4 93 20 2058386 2058404 AGAGAAAGAATGCGGAGGG 60 2058459 2058724 CTATAGTGCGCTTTATCGCTC 59 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000084123 1 1 2 105 19 25950272 25950371 CTATAGAAAGGCTGAAGGCAC 59 25950187 25950205 TGACTCAGGAGGAAGTTGG 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810 1 1 2 90 8 48721512 48721530 CTGTTGCTGCTCATGATGG 59 48721584 48722123 CCAGGATCCAGATCTTGGG 59 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000083976 3 1 2 82 12 13524286 13524304 ATTCCAATGCTGGTTACCC 58 13524347 13526701 TCAGAATCATCTTCTGTCAGGA 59 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 1 2 2 80 17 45441709 45445167 TACGTACCCTGAACTGAACAC 60 45441649 45441667 AACTGGTTGCATGGAAAGC 59 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 1 2 2 80 2 118957608 118957631 CAGAGCTAAACAGATACTAGACAC 59 118957667 118959057 GAATAAACCCTCTTCTCTGCTG 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 2 2 2 81 1 200848258 201026423 CAAGATGAGATACAAGGGTCAG 58 200848198 200848216 GCATTGCTCAATGGGTACC 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275 1 1 2 86 20 10362822 10364717 CATGAGCAGATCCAATACCG 59 10362755 10362773 GTTTAGCAGGTCAATGGCG 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 2 3 9 101 20 2087659 2087971 AGTTCTGAGCACTTGAAAGC 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000082489 1 1 2 90 3 7745140 7752844 CCTTTGGCAACTGTGAGTG 59 7745068 7745086 TTGTGTTTGCAGCTGACAC 60 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000041631 2 1 4 80 15 34795026 34795268 TACTGAAGCTTGAAGAGAAAGC 59 34795306 34795327 GCTTGATAAAGTCAGAGGACTG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 1 2 4 80 1 267625418 267625437 ATCTACAGCATGAGGTTCTG 57 267625479 267627770 GATGATTTCATGCCTGATGC 58 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000089006 2 1 2 127 14 79938590 79938609 TTATGAACAGGAGGGCAGTG 60 79933544 79938500 TTTGTTCTTCAACGAGCCG 59 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071863 2 1 2 121 6 132421374 132422184 ATTCAGTCCAGCCCTTCAG 59 132425352 132425371 CTTTGGGCATGTACATGGTG 60 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355 3 1 4 108 3 63139903 63207749 CAAACAAGAACAAAGGACCGA 59 63139815 63139835 TAATCTCACCGTCACTGTTCC 60 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000046456 1 1 2 80 6 137946272 137946290 CCTGTCATCAACAATGGCT 58 137946334 137948807 GTTTGCCAGACCATCTACC 58 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000078039 1 2 3 80 1 32098721 32099163 GGAAGAACTTTGTGGACACTG 60 32098661 32098681 GGAACAAGTCGATGTTCTTGG 60 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000091085 1 1 2 107 3 77709984 77791837 TTCTTCTTGGCATTCCTGTC 58 77709896 77709914 CCAGCCAAAGGAAATGGTC 59 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 2 1 2 246 2 181899921 181899940 AAACTGTACTTCTGGTTGCT 57 181899664 181899683 ACTGCTGTGACATACCTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464 2 1 2 81 4 157234381 157234401 ACAGAACCGGATCTATCTCAC 59 157234443 157235039 CTTAATGAGGCTGTCACGAG 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679 2 1 5 97 13 47423152 47423170 AAACTTACTCCTGTGGCCT 59 47415474 47422657 TTCTCCACTTCAGTTGGCT 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859 2 4 5 80 13 47426330 47429305 CCCAGACAACTATGATAAGGAC 58 47426271 47426289 TCCTGAACTCTGTTGACCA 58 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 3 2 2 84 1 37740070 37740273 GGCTGCAAGGTAAAGAGTC 59 37740004 37740022 GGACACTCTAGGACAGAGG 58 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000092189 3 1 2 97 10 40913738 40953420 ATTCTTCAGGTCCTCCTGTG 59 40877914 40877934 GAAGATGTTGACCCTGTAGTC 58 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000043271 2 1 2 80 18 29606986 29607087 TGGGCAGAAACTTGTTACTG 59 29607129 29607148 ATCCGTCTTTCCAATTGTCC 58 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000079291 3 1 2 80 4 182589390 182590368 AAGTGTCACTATGTTGGAGC 58 182589329 182589347 TGGTTCATAAGCCAGACCA 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000088861 1 1 4 80 7 64825370 64825388 CAGTCGGGAATCCTGAGAG 59 64825545 64829962 GATTGTTGCCAAGAGGGTC 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000079688 1 1 5 82 1 20903363 20916149 AGGGACGGAAAGAGTTCAC 59 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 1 1 2 80 6 93429468 93431203 CATGTTGGAATGGCAGTGG 60 93431246 93431265 AAAGTTGGACGCTTCTTCTC 59 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000078362 3 1 3 80 20 2095571 2096769 ATGGAATGGGAGAATCGGAG 59 2096812 2096830 AGTGTCACTTGACCACTCC 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 3 2 2 80 12 13897007 13897026 GGGTTCTCATTCCTATGGAC 58 13897069 13897755 CCACACGGTATATGTCAGG 57 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117 3 1 4 93 19 41140808 41142772 CGCAGGAGAATGAAGAGGA 59 41140733 41140752 GATGTGACAGAGATCCCTCG 60 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286 3 1 2 81 11 61253476 61253495 TAGCAATTCCTGTTCTCCAC 58 61252347 61253435 CTTCTCAGTCTTTGTTCTTGGA 58 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000066313 2 1 2 82 17 43500547 43500565 TAATTCCACAATGGCTGGT 57 43499607 43500100 TTCTCCAATCCAGAAATGCA 58 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502 2 2 3 84 2 264992478 264992496 AGAAGCCCATCCAGAAACC 60 264989928 264992433 TGACTGGAAATCTTCATCACCA 60 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 1 3 3 80 2 265116063 265116081 TCTTAACCTGACCCAGCTC 59 265113108 265116020 CGCAATTTGACAAGTCTTCC 58 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000071758 3 1 2 81 1 38583406 38583510 TCCAAACACCAGAGAATTCAC 59 38583345 38583365 GAATGCAGCGAACATTAAAGG 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 3 3 3 80 9 10658946 10658967 ACATTCTATGAGGTCAACTTCG 58 10658805 10658905 CAGACAGTCTCTGCTTGTG 58 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 2 1 1 69 10 90930296 90930315 CTAAGGAAGACCAGGGAGTC 59 90930892 90930910 TGTACGCTGCTATCACCAG 60 NA DesignNoJunction Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 3 2 2 131 13 45316567 45318785 TGCCATGGAAATATACACTTCG 59 45316457 45316475 AAATAGATGGTGGGCAGGA 58 NA InUTR Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910 3 1 2 81 17 46682519 46682540 CCAAGAAATCCAGACTTACACC 59 46680230 46682479 TACATCAACCTGTCTCCTCTC 59 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 2 1 2 80 2 164627205 164627224 TTTCCAAAGGTATTGCCAGG 59 164627267 164627287 CACAATCGTCTCCTTGCTC 59 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000009687 3 1 2 83 3 79605530 79605657 GTAACCAGCCAGAGTTCAG 58 79605701 79605722 ACTAATTTCTGGAGCCTTTCTC 58 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000078765 2 1 3 80 8 1611901 1611921 AAGATATGCCTACTCTTGGCA 59 1610418 1611861 TCATCAGAGGCATAATTGTGG 58 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 2 2 2 80 1 220784824 220784844 GCAGACAACAAAGAAAGAACG 59 220784683 220784782 CTGAAGAGATCCTCTGCCT 58 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517 2 1 2 81 9 12641909 12641929 TATCCGAGTTCACCAGTTCAG 60 12641966 12643927 GGTAGTTAACAGTTGTATAAGCCTG 60 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000077532 2 1 2 83 9 12643229 12643918 ATACCTCCGGCTTATACAACTG 60 12643962 12643980 AACTGAGCATTCATTGGGC 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467 2 1 4 93 X 53457115 53492174 CATGGAAACAAATCTGCAAGC 59 53492228 53492247 CATCATCTCAGGAGGAGACG 60 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000081061 1 2 4 95 X 53504943 53504962 AAGATCTTCTGAGTCCTCCC 58 53505016 53512017 CATTTCTTCCTCTTGAACTAGGG 59 NA Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 2 2 2 80 7 76229185 76229204 CCTTCAGCATGTATGACCTG 59 76205506 76229142 TCTTGTAGATTGCCTGCAC 58 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000000053 3 1 2 80 13 89988831 89988850 GGATCTTCCTCAGATGTTCG 58 89988893 89990370 AGACCTGTTGATGAACTGG 57 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853 2 1 2 80 12 19581314 19581333 CAGATGAGGTCATCTTCCCA 59 19581152 19581271 CGGTCACTACAATCTTGGC 59 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282 3 1 2 80 1 224937915 224937934 GCATCTTGTGGCTTAGACAG 59 224937971 224938126 CTTGAGATAAACCTTATGCTCTAGC 60 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 1 3 3 134 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518941 150518959 GTCATAGCTTTCATGCCGG 59 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000012988 2 1 2 80 15 37748623 37749422 GCCAGATAGCAAATGTATACGAG 60 37749462 37749480 GAACCACGCTGATCAACTG 59 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000047823 2 1 2 80 X 77529701 77535667 GGAACATCTTGAAACCTATCCTC 59 77529643 77529667 GAATATTCTCCAATCGTTACAGTCC 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064345 3 1 4 81 3 111728695 111728715 CCATAAAGGGCAAACTAACCC 59 111728757 111729345 TTGTCCTCTTCTCGGATAGG 58 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005446 3 1 2 81 18 41363698 41363716 TTGAGCAAGACATAGAGCG 58 41361007 41361145 GTTGAAATGTCATTCAGTGCC 59 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001333 2 1 2 101 12 2239660 2240888 CAATCCAGAACGCTCTTCAG 59 2239387 2239405 CGTTCAGGTTCTGGGAGAG 60 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013621 3 1 4 90 4 152490438 152492566 GTCACTACTCCTCAGTCCG 59 152490366 152490386 GACGTTCATGAATAGTTGGGA 58 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399,ENSRNOT00000014718 3 2 3 80 4 7132289 7132307 GGTAAGATCCCACCACCTG 60 7132349 7132620 ATTATTGTAGATGCAAGGCCC 59 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130 2 1 2 80 5 101558227 101558247 CATCCACAACATAATGGTGAC 57 101557101 101558185 TTCTCCAGGTGTCTTTGTC 57 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 3 2 2 80 2 237755876 237770215 TTTCTAGAGGAAAGCATGAGAG 58 237770256 237770274 TCCTTTCCCGTAGAAGGTC 58 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 2 2 2 81 10 43542836 43542854 CCAGCAATCTTGAGGAGGA 59 43542899 43544548 GGAAACTCTGTGTCCATGG 58 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 3 3 4 83 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820456 37820474 CACAGCATTGATGGCTTCC 60 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 1 2 2 80 11 67672245 67672974 AGAATTTGCTAAGGTTTCTCCC 59 67672186 67672204 GCATCAGCCAGTACATCAG 58 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 3 2 3 110 2 113833139 113833158 ATAGTGCAGGACACAGAGAC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000012308 2 1 2 80 8 69085915 69085933 TCCCAAGGCTTCTGTTCAG 60 69085974 69086922 ACCCAAGATCTTACCTCTTGTG 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 2 2 2 83 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626072 TAAGCTCTGAGACCGTCAG 59 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167 2 1 2 80 1 101625001 101625311 GATCTCCAAAGAAGGAATCCC 58 101625351 101625371 ACAGGTGATATGTCAAGTTCC 58 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 2 4 7 80 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517418 TTAAAGCCTGAGTCTGCAC 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825 2 1 5 106 5 101639499 101639517 TGTCACTCTTTCTCCCGAG 59 101639587 101648428 GGGCTAAAGTCTCGGACTC 60 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000089471 3 1 3 81 14 22780359 22780377 CTCTGCATGACCTTAGCTG 58 22780422 22806605 GGGTATGAAGGGATCACAC 57 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607 1 1 3 80 14 86227675 86227693 TTCAATGCAAGGAGGAAGC 59 86221590 86226846 TAAACTCTTGGCTGCTGAG 58 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 3 3 3 60 7 116606417 116606435 ACTGATACCGTTTGTGCCA 60 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 3 2 2 80 X 105268446 105268464 GAGGCTTAAACAGCTCCAG 58 105268507 105270499 GGAACTTGAACAGAAGTGGA 58 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 3 2 2 80 16 20408219 20408354 TGTCAGTGATGAGATCATGTG 58 20408395 20408414 CGCAGAAGCCTAGTAATGAG 58 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000080811 2 1 2 81 4 8178036 8178054 GCTAGGCAGTATCCCAAGG 60 8178097 8178475 CAATGCTATGTGATCTCTGCG 60 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813 2 1 2 81 14 112768812 112768830 TCCTATGTTAGGCAGCTGG 59 112730123 112768767 TTCTATTCTGGGTGGCCTG 59 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625 2 1 2 82 X 82644542 82644562 ACCCTTGGATAACCCAAAGAG 60 82643431 82644500 CACTGCTTCCATAACAACCTG 60 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 1 3 4 81 10 67609239 67609257 TGTCTGGAGTATCTGGGCT 60 67609300 67611170 CTCTTGTTACTGTGATGGCTG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286 2 1 2 98 10 105752611 105752629 TTTAAGTACAGCCCTGGGC 60 105745372 105752552 CAGCTGTTCTTTCTGAACTCTC 59 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256 3 1 2 80 4 84374502 84376256 GCACTGAGGTTTGGAAACC 59 84376300 84376318 TTCGAACCTCTTCTCACCC 59 NA Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 1 1 1 64 10 42942679 42942697 GTACAACTCGAAAGGACGG 58 42944137 42944158 GGAAGTTATCAGAAACCAACCA 59 NA DesignNoJunction Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000080364 2 1 2 81 12 18119742 18120178 TAGGCACTGGATTGGTGTC 59 18119679 18119697 CTCTGAACAGCATCCAGCT 60 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962 3 1 5 82 13 77940671 77942278 CTAATGGCAATCGAAGGCAG 60 77942323 77942341 CATCACGCAACATTCTCCA 59 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 3 2 2 86 3 22648841 22648859 TTAACCACAATCCCGATGC 58 22648909 22657548 TCTGAAACCAGACCTGGAG 59 NA Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 2 1 1 72 10 13073685 13073703 TCCTTGCCCTGGATATGTG 59 13073517 13073535 AGAGTGCAGTGGATGATGG 60 NA DesignNoJunction Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227 2 1 2 80 18 57143383 57145249 CTTTCATATCCCAGCTGGAG 58 57141356 57141374 GTTGCTGTGGACAAATCAC 58 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227 3 1 2 80 18 57145284 57145303 TAGCCAGTTAGATGTGAGGT 58 57143376 57145241 TTACTTTCTCCAGCTGGGA 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000050535 2 1 3 80 11 71119599 71119618 AACTTCCACCACAAATGGAG 58 71117927 71119556 GGTTTCTGAGTTACCGGAC 58 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600 1 1 2 80 15 85946575 85946596 GTGGAAGAAAGCTATACACCAG 59 85943238 85946534 TCTCTTCTCGCTTCTTCCA 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905 3 1 11 104 6 99150486 99150504 GATCTGATGTCCTTGCAGG 58 99151226 99151876 TTCCTCTCCAAACTTTGCTG 58 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424 1 1 2 90 15 84477325 84477343 TACACAGCTGTACGGTCAC 60 84447046 84477272 AGAACTGAACTTTGCCATGG 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076434 2 1 5 174 2 30664878 30666571 GTGGTAATGGTACACCAGG 58 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000068328 3 1 2 80 3 162539860 162546014 TAGCAGTAAGGATCAGTCAGAG 59 162539801 162539819 ACATCAACAGGGTCTGTGG 60 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739 2 1 3 80 X 75167501 75167521 TCACCAGAGGAAGTATATGCA 58 75167267 75167459 ACAATCTTTGCTTTGTGGC 57 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941 3 1 2 157 19 49996740 49996758 ACACCTCACTATGCTCCAG 59 49997945 50000318 TAGGAAGCTTGGCCTTCAG 59 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079 2 1 2 81 10 17621127 17621145 AACAGACCTACAGATGGCC 59 17621187 17630195 TATCCCAGATCTCTATGTCCTG 58 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005 3 2 3 111 15 61854502 61856477 AGCCCAAGAGAAAGAAGGG 59 61856552 61857676 ATTGTGTTTCCCTTCCCGT 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 3 2 2 81 19 44143515 44143533 ACATGTGAATGGTGACCTG 58 44141135 44143472 CACCGATACGTTGTATCTGAC 59 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 3 1 2 63 10 43633037 43633057 GGATTTAGTCATGAAGTTGCC 57 43637231 43637249 CGCCATGTTTATGAAAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242 1 1 2 80 3 92935435 92935456 TGTGAAATTGAGACTGACAAGG 59 92931457 92935397 TTCTTCAACCACTATCTTGGCT 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340 3 1 2 81 1 219375870 219378884 GTTGGGACTAGTGCTTATCCT 59 219379075 219379093 CACAAAGAAGATGGCGCTG 60 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 3 2 2 80 14 11201125 11201144 ACATACACAGACGAAGAGCC 60 11201184 11201310 TTTGATTTCACACTTCCCAGAG 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000077612 3 1 2 81 11 65076142 65076161 CCATCCTTATCCCTCCTCAC 59 65073761 65076098 ATGTGGCTTACTGAGGCTG 60 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000042781 3 1 2 81 19 28291655 28292278 CTCTGTCTATGCACAAGAAGAC 59 28291595 28291614 CTGTTGAGGATTGTGGTCAG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000080824 1 1 2 80 7 31822357 31823608 CGTGGAAGAGCAGTATAGC 58 31822295 31822315 CCACAGCTAATAATTCCTCCG 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910 2 1 3 187 10 75089420 75094176 GGCCTTTCAATGTCACAGG 59 75094326 75095249 TGTGATGATCTGGACCATGG 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000066495 3 1 2 90 2 116065637 116065657 CATTTCAGACTCTTCCTCCTC 58 116065709 116070164 ACCTGATAAACCACTGGTG 57 NA Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837 3 1 2 121 17 10507310 10510493 TAACTGGAACATGGAGGCTG 60 10507208 10507226 TGTAGATCCTGTGGTCAGC 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000015840 1 1 2 93 5 169576690 169580566 ACCCATGGAAGAGACTGTG 59 169576615 169576633 GATCTCCATGGAGCTCCAG 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 1 3 4 80 7 140416206 140416224 TCACAGTATGGGACGTAGG 58 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 2 2 3 81 19 49462568 49465002 TCTGCTATGTGAGGACAAGTG 60 49469920 49469939 CTGGTGCCGATGAAATTGAG 60 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000082652 3 1 2 88 X 112281115 112281134 ATACCACCACTGTGACATCC 60 112281181 112290819 GTAGTAGATGGATATTGGCTCCA 59 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 2 2 2 85 3 112371000 112371021 CCTACCACCTCTGATAATAGGA 58 112370311 112370957 ATTCATCAGGTAGAACAGTCAG 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 1 4 4 80 12 19760582 19938338 AGTGGAGCAACAGATTCCT 59 19760520 19760538 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496,ENSRNOT00000083116 3 2 2 83 2 187367988 187368472 CGAAGACCTAAATGGAGAACTG 59 187367926 187367944 CGTTCCAGACAGTAGTCCC 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000084855 2 1 4 80 4 85601300 85601449 CGATCGAGAGTGAAGGTCC 60 85601489 85601511 GATAGGAAGAAAGAACAGATGGG 59 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455 3 1 2 97 1 78714762 78714780 CTCCAATCTGGTGTCTGCT 59 78715821 78717460 TCATCTCACAGTGAGGCTG 59 NA Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 3 2 2 81 1 80955066 80955957 GGCTCTCAGGAAGAAGGAG 59 80956002 80956020 AGTTCCTCAGGACAAAGGG 59 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000079779 1 1 2 75 5 144106929 144106947 GACTCTTCTTCCCAAACCC 58 144107971 144107989 TTCACAGAGTGGCTCAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 1 7 8 60 20 1960450 1960468 CTTGCACCGAACCATTGAG 60 1959863 1959882 GGAGACATCGATGTCTTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000085050 2 1 8 91 20 1959670 1959824 GAATACGTGGCTTGGAGAG 58 1959597 1959615 AGACACAGATGGGTGAGTC 59 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000086745 2 2 3 80 3 93663250 93663268 AAAGGAGATCGAGCTACCC 59 93662521 93663207 TCATTGAACAGCTTCACGAC 59 NA Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 2 1 1 177 X 105419298 105419316 GGCACATACCTGAAGTGGA 59 105421459 105421477 AAGAAGCGCATCACTTCCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 3 3 3 102 1 88587167 88590625 GCTATCTGGAAGATGAAGAGGT 60 88590683 88590706 CTCTCCTTAATTAGCTTCTTGTGG 59 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 3 2 2 82 13 48648522 48648541 GAAACAGGATCTGGATAGCA 57 48648586 48649271 ACAGATCACTCTTGTTGGC 58 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 1 2 2 122 19 52181091 52193766 GAAGTTTGCTGAATCCGACC 60 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278 1 1 4 92 1 262911975 262911993 TTAAGGCCTCAACTCCGAG 59 262912725 262913323 CATCCTCTACGCTGTCTGG 60 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 3 3 3 80 18 59988530 59988550 GTTTCCTGTGGAGATCAAGTC 59 59988166 59988490 ATCAACACATCCACAGATTCG 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 3 2 3 83 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068770 65070960 ATATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 2 2 2 80 16 18699877 18704782 CTAAGACTCAGGTAACAGTTCAG 58 18704822 18704840 CAGAGATGACGATGGTGTG 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490 1 1 2 80 4 116566576 116569890 TTCATCTAAGCTCCACCGA 58 116566514 116566532 GAGAGTTGCTCAGAGTCCT 58 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000073798 3 1 2 111 1 99449363 99455727 AAACTTGTCAGGATGGGCA 60 99455802 99455820 GTTAGGATGGCCAATCCCA 60 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000045087 2 1 2 81 8 113960242 113960263 GAGACACAACAATGACTTTCAC 58 113957485 113960202 CAGACTGCAAACTGAGATCTG 59 NA Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 1 2 2 80 3 95313045 95397388 TACCTGCTGAGGTACTGTG 58 95397432 95397450 TTTGCACTGATTGGTCACC 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000065584 3 1 2 81 10 37051139 37051157 AACAGCAGTATGGCTCTGG 60 37049989 37051098 TAATTTGTACTACCCTGACCTCC 59 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000088243 1 1 2 80 1 266119252 266119347 TTCTTCATTGCCAGCAACC 59 266119391 266119409 CTCATCCACCAGGTCAGTG 60 NA Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 2 2 2 80 9 10973764 10974003 ACAACCCAGATGTGAGGAG 59 10973702 10973722 TCTTCTGAAGGATCTGAGAGG 58 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 1 2 3 141 15 11874676 11878821 TACTGACTTCACTCCAGGG 58 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 1 3 3 80 18 60695739 60698464 CTCTTAGATGGATTCTTCATTCGAC 60 60698500 60698520 CACAGACTCCATGTCATTCAG 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000020002 2 1 2 84 1 141565951 141565970 TACTGTCTACTGCAATGCCA 59 141565883 141565902 GTTCACCACAGTGCTTTCC 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489 2 1 2 82 1 81242990 81244681 TGGACATCTCCAAGATGCA 59 81244727 81244745 GATTCTCTTCTCCAGGGCA 59 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429 2 1 2 80 3 150380385 150380403 CATCAACATGGCTGGAGAG 58 150380447 150380624 CTGTAGCCGCTGTATATGG 58 NA Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 1 2 2 80 3 176542763 176542782 CTACGAGAATGTCACCTCCA 59 176538232 176542721 CCATCCGCATTGTTGTAGAG 59 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699 3 1 2 83 10 71418798 71418816 CCTTTGATTCGTTGCTGTC 57 71417663 71418754 CTGCATAATTGTCAAACTCCTC 58 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000031331,ENSRNOT00000077458 2 2 3 101 6 108511909 108511927 AGGACACTGTGTCAACACC 60 108506900 108511847 GCACATTCATCTATGTCCACAC 60 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291 3 1 2 84 7 35383431 35531259 AGGAGTGAAGGTAGAACGC 59 35531307 35531325 GTTGAGGTTGGTGTCTGAC 58 NA Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 3 2 2 80 10 10797360 10797378 CACTGTCTTCCTTGACCTG 58 10797060 10797317 GAGCTATGTTCAGAGCTCTC 58 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 3 2 2 60 14 107393319 107393338 CACCTTTGACAAACACGGAG 60 107393359 107393379 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 2 2 2 80 3 3820394 3820487 GAAATTCAGGACATCAACCAG 57 3820334 3820352 GGAAATCTTCTCCCAGTCG 58 NA Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 2 2 2 80 3 93712642 93712662 TATCAGCACAACCTATGAACC 58 93710841 93712605 GTCTAGATTCAGAATGAACCTGAG 59 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412 2 1 2 80 10 46155479 46155497 CAACCAGAACCTGTCTGTG 58 46154180 46155438 AGGACTTTCACTTTGTTCATCC 59 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000001360 2 1 2 91 15 58655214 58655638 TTGACAATAGCTCTGGTGC 58 58656855 58656874 AACTGCATACATCAAATGGC 57 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000083171 3 1 2 81 3 57021476 57021494 ATGCAGATTGTGAATGCCT 58 57020984 57021433 GGATATTTCCTGGCTTAAGGT 58 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000001093 3 1 2 80 20 27756735 27756755 TATCCTGAGAACATCGAAGCT 59 27720968 27756693 TTTCACCAACCAACTAGGC 58 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 2 2 2 91 7 97900306 97900324 AGACGGAAAGTAGCAACGA 59 97899432 97900253 CAGAGCTTTCTCGTATTCCTG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 95 4 14236299 14236317 AACATACTGGTCAAGCCAG 58 14236882 14237833 GGTCCCAGTCTCATTTAGC 58 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000044257 2 1 2 81 1 100319724 100319742 TGACAAGGCAAAGAGACTC 57 100319784 100328073 CTTGATGATGTAATCACTTGGG 57 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262 2 1 2 83 10 66760854 66760872 TCTGGCTCAGAATTCACCT 58 66760917 66766219 CAATCCAATGCAGAATTGGTG 59 NA Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 2 2 2 80 3 111831484 111831503 AAGACAGCTTCTACTGGTCC 59 111831546 111831721 GCTCTTTGTCCAGATTGGC 59 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000086391 2 1 2 80 9 70405969 70432042 CAACCAATTGAAGAAGATCCC 57 70405909 70405927 GTCAGACTCAGCTTGTTCC 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 1 2 2 80 2 173472403 173475439 GAGATAACATCCACAGTTTCAG 57 173472344 173472362 GACATCGGTATTACCAGCA 57 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000071067 1 1 3 80 12 24606683 24606703 AGAATCTACTACAAGAAGCGG 57 24605882 24606264 CTCACAACCATATACCTGCT 57 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000054828 3 1 3 143 1 221893580 221906693 CTAGTACTGGTCCCACAGC 59 221906799 221906818 GAAGGATAAGGATGCAGAGC 58 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000046388,ENSRNOT00000086036 3 3 3 80 10 65588102 65588122 ACCAGAAAGATGACAATGGTG 59 65588164 65588278 CCTTGTCAACCTTGATGCC 59 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000035113 1 1 4 80 13 79065949 79065968 AACGTGATCAACAGCAAGAC 59 79066010 79066958 AATTCCCTGGATCTGCTCAC 60 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982 1 1 3 86 3 113420555 113420573 TGTTACTCAGTCTGCACCT 58 113419558 113420505 TAGGAAGCCTCGTTGTGAG 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982 2 1 3 87 3 113420555 113420574 ATGTTACTCAGTCTGCACCT 59 113419558 113420505 TAGGAAGCCTCGTTGTGAG 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008 2 2 3 80 3 113420703 113421581 AAGAATTGGCAGACTGGTG 58 113420641 113420663 CATACTGTAGAATCCTAGTGTGG 58 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297 3 2 3 98 3 2512340 2512358 CCTACAAGCGACACAAGGA 60 2511008 2512281 TACCACTCTTTCTATCCTGCAG 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 3 4 4 82 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 2 4 4 81 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238104 122238123 CAATCAGCTCTGTCTTGGTG 59 NA Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 1 2 2 80 4 155333368 155333389 TGTACAAGACTGTACTCTGTCC 59 155333429 155334232 GTACATGCGACGTAAACTGG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 3 2 2 68 12 2580353 2580372 TTCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 1 2 2 80 X 124413029 124424517 GGATTTAAGGATATGAACCCTACTC 59 124412973 124412994 CGCATAGTAAGAAACAGTTGGA 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000078306 1 1 2 187 5 173340629 173344357 GGGCAACTATCGATGAGGT 59 173344911 173345154 CAGACATTCCGAAATGACGG 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000070825,ENSRNOT00000071829 2 2 3 80 17 66481695 66481862 CCAGAAGAACTGGAAGAACCT 60 66481902 66481922 AGCTCTTCCTTCTTCATCACC 60 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 3 2 2 93 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952981 47958505 ACTGGATTTGAGTGGTGCA 60 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 3 2 2 80 4 9982181 9982199 TCTCTATCCCAAACGTGCT 58 9982243 9990349 TGTCAAGCTCCTCTTTGGA 59 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 2 3 3 80 15 24161529 24164290 AACGCAAACAGTATCACTCTG 59 24164331 24164350 GTTGTTCTCATTGAAGCGGG 60 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 1 2 2 84 6 99388224 99388242 TTTACTTCAAAGCCCACCG 58 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471 1 1 2 80 17 63267329 63273009 CAGCATTGACTCAGACCCT 59 63273052 63273071 ACTGTCCACCTCTACTTTGC 60 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 2 2 2 80 2 226696192 226696681 CAAGAATGAGGCATGGCTC 59 226696130 226696149 TGGTTTATGTCACTGCTGTG 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 2 2 2 80 7 143692857 143692970 TATGACCGAGGCTATGACTC 59 143693013 143693031 TCTGTAGTCGTCATCCCTC 58 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 3 2 2 104 4 117597678 117600448 AATGCCAATGTGATTGTCG 57 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237 3 1 2 82 9 67702975 67702994 AAGGTGGAACTCATGTACCC 60 67703038 67703502 CATGGTTCTGGATCGATGAC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649 3 1 4 81 8 70183960 70184593 TATGAAGTTGAGCCCACAG 57 70184637 70184656 GTAGGTCGTATGGATTCTGG 57 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035 1 1 3 92 10 13321394 13321413 GGTAATGACTGGAGTGACGT 60 13312756 13321342 AATAATAACCTGTGTCACGTGC 59 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265 1 1 2 112 8 52803014 52803034 GAAAGCATCAAAGAGCTTCAG 58 52802792 52802941 TGCAAAGTTAAGGGCTTCTC 59 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809 3 1 3 81 1 247248577 247248595 CCCGTTTATGAAACACCCA 58 247248637 247251535 CTTAAGAACATCAACCGAAGGA 59 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910 2 1 3 88 1 247295967 247295985 AGAAGTCAGTGGCGATCAC 60 247296037 247305648 AACTTTCTCCGAGAACCGT 59 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 1 2 2 80 1 154152107 154165295 CAGGTCTTAAATCTGGAGAAGG 58 154152048 154152066 CAATCTGGGCAACAGATGG 59 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 3 2 2 80 1 154152103 154165291 TCTTAAATCTGGAGAAGGAAGC 58 154152044 154152062 ATTCCAATCTGGGCAACAG 58 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000051067 3 2 4 85 17 70704238 70704257 CTTTGCCAGTGTAGTCAGAC 59 70704305 70705176 GTCCCTTCTTTGCATCCTG 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354 1 1 4 104 17 70705263 70705281 CATGTGGCTTCCACTTCTG 59 70707480 70709774 GACAGTTCGTAGACAGGCT 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076057,ENSRNOT00000088114 3 6 7 80 X 70644939 70645258 GCACTTATGGAAATGAACCGA 59 70645299 70645318 TTCTTGCTCCAGTTTCATGG 59 NA Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 3 1 1 62 19 54607604 54607622 GAGTCTGACGAGGAGACTG 59 54612043 54612061 GACCAAGATGGGAGCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226 1 1 3 167 15 23667036 23667054 TTAAGGGCTGGAACGAGTG 60 23667185 23792835 GGTTAATGATTCCCGGGCT 60 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679 1 1 2 86 18 73585359 73585377 CAACAGGCCAATTGGACTG 59 73585427 73603596 TTCGAAGTACCTGGAGCTG 59 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 1 1 1 61 4 180291583 180291601 CAGAGACACTCCGTTCTGG 60 180315486 180315504 TGAACAGTCCAAGGTAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000025013 1 1 2 80 19 29599638 29642357 GATTGCATGAGGAGCAGAC 59 29599576 29599595 CTTGTTATCGCTTAGGCAGC 60 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 3 2 2 80 5 50061014 50061032 GGAGTCTAACAGAGACCCT 57 50060053 50060972 GTTTCACATCTGGACAATCCT 58 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430 3 1 2 80 1 101724669 101773160 GGATCAGAAAGCCAGAAGC 59 101724607 101724626 CTCTGGTGTATACATGCCGA 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 3 2 2 80 11 74765352 74769125 CAGGAAGCTCAAGAAATCTCTG 59 74765293 74765315 GTATTGTAGCTGGCATCATAGTC 59 NA Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 2 1 1 70 15 19196480 19196498 TCTTCACCATGTGTTCCCT 59 19197914 19197932 ATTCTCACTGAAGCAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000068276 1 1 8 80 4 8215576 8215895 CAGTCCATGGAAAGGTTCAG 59 8214529 8214550 TGATTTCCTAGATCCTTCACGA 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000091561 2 1 6 89 17 77185129 77185149 CTTCGTGGAGATAGGATGAC 57 77189046 77189064 GATGGAGTCTGTCCTTGTG 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000008976 1 1 3 80 13 48074237 48075036 ACATCAACAAAGGGATTCCTC 58 48074177 48074198 ATTAGTTCTCCAATAGCCTGAG 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000008976 3 1 3 81 13 48074243 48075041 TGCAAACATCAACAAAGGGA 59 48074181 48074200 GTTCTCCAATAGCCTGAGTG 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000079217 2 1 2 60 18 54113120 54113142 GAGGAAGACACATGTACTATTGG 59 54118151 54118170 CCTTGATTCGTTGAGTAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000087118 2 1 2 81 10 10861039 10881764 GAAGTCCGGAAACTACTTTGC 60 10860978 10860999 AAAGAGGTAACCTTCAGGATGG 60 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000061455 2 1 2 80 X 123487408 123487428 GTCGGAGAACAACATAATGGT 59 123487850 123493322 TCCACATGTGTACCATCCTC 59 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601 3 1 2 117 1 53186114 53186132 TGAATGGGATAAACACGGC 58 53186211 53189003 TTGTAGTACACTGTTGAGGTC 57 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000073757 3 1 2 81 12 22440485 22440505 CTACATCCTGCTCTTCTTCCT 59 22441261 22441284 CAAGCTGATGGAAGAAGCC 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000088292 1 1 2 80 1 5248346 5250563 ACTCCTGCTGGTGATAACTC 59 5250602 5250624 CGGATTATAGTAGAGGTTCAAGC 59 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 1 2 2 80 4 121649213 121649232 AATGAAATGTGGGCTTACGA 58 121649272 121649809 ATGGTTGTAAATACCTCACCAC 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000065774 2 1 4 129 2 92607379 92607397 TATGTCGACAGTAAGCTGC 57 92608729 92621444 ATAAAGTTTGCCTGAGGCT 57 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 3 2 2 80 8 117269289 117269675 ACCTTCAAGACATTTCGTCCT 60 117269717 117269735 ATATCGGTAGACACGCCAC 59 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000046798 3 1 5 86 20 3410698 3410716 AGCCTTATACTACCTGCCC 58 3410629 3410649 TAGAGGACCTATTTGCCCTG 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646 1 1 2 83 18 44879543 44891047 CAAGTGGACCATTGACCTG 59 44891094 44891112 ATTGTGATGGTCGTGTCAG 58 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646 3 1 2 85 18 44879543 44891047 CAAGTGGACCATTGACCTG 59 44891094 44891114 AAATTGTGATGGTCGTGTCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091840 2 1 10 90 7 117253869 117268110 CCCTCAAAGATGAACGAGAC 58 117253489 117253507 TCACTGATGTGCCTTTGAG 58 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229 2 1 2 81 4 7707685 7769922 AAAGACATGGAGGAAACAAGAG 59 7769964 7769982 CTCTGCAAATTCCAGCAGG 59 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 2 1 1 79 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123042373 123042394 AGAATAACTGACTCCTCGACTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000060514 2 1 2 85 15 28496039 28496058 ATATTAACCTGGCTGCAGAG 58 28495451 28495993 AAATGAGGAACCGTACATCTC 58 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408 1 1 2 111 19 42800134 42800152 AAGATGCAGAAGGACCCAG 59 42781545 42800059 TGACTGGATGATGCTGTCC 60 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000045400 3 1 4 108 5 141074655 141076137 CCAGTCTGCTCAGTATGGT 59 141074528 141074546 TACTTCAGCAGGGATCAGG 59 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000081482 1 1 4 86 5 141130132 141130150 AGGAGATCAACACCAAGGG 59 141126151 141130085 CTGTAAGATCTGTCTTAGCCTG 58 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 3 2 3 81 9 65704202 65706049 AGTCTCAGTTGCAACTTCGA 60 65704140 65704158 TAAGATCCTGCAGGTGGTG 59 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344 1 1 2 80 18 56078566 56078586 GTGGCTGTTGTTTGAAATGAG 59 56078627 56080109 ATGTCCAGTGGCTCTTTAGG 60 NA Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 2 1 1 109 7 123579013 123579031 AGGTCAGTCATCGTCACTC 59 123580741 123580760 GTCCCAACATAGAGAAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000084238 1 1 3 80 2 154576805 154577541 CTGTCATATGGATTCAGTCTTGTG 60 154578517 154578538 TTTGCATGAAGATCAGCTACTG 59 NA Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000002376 1 1 2 86 11 83892465 83892886 CGTCAGAAAGTGACTCAGAC 58 83893101 83893119 TGACTGGCTCATCTAGCTG 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000085655 3 1 3 81 18 63024200 63029319 ACAAGACGATCATCAGAAAGG 58 63029360 63029380 GTTTCTGTCACAAGATCTGCA 59 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423 1 1 2 83 5 171458087 171458105 CAAACATGCCCTATGCCAC 60 171457332 171458040 AGCTTTCCAAATGGCACAG 59 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 2 2 3 80 9 10467472 10470828 TTAAGAAGGCCATTGAAGAGGA 60 10467413 10467433 TCTTAGGCATCTTCTTGTTGC 59 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000018293 3 1 2 80 9 74019662 74019681 GAATGCCTATGCTTTCCTGG 59 74019233 74019620 CACTCAGCAAACTTACAGGC 60 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744 1 1 3 98 5 78446053 78446071 CTAGGAGGAGAATCAGGCA 58 78467492 78470064 CTTCTATAACGTGTAGCAGCA 58 NA Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 2 2 2 80 2 154526560 154526578 CCTCATCAGCAAGTACACG 58 154526102 154526519 AATCCAAGCAACAATCTGTAGG 59 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000065649 2 1 3 80 4 38338325 38338345 AGGCTGAAGACTTAAGAACTG 58 38338387 38338996 ATCAGCTGAAGTTCCTGAC 57 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 3 2 2 82 X 110683622 110692680 TGATTGAGCCATATCAGACCT 59 110692724 110692742 TGGACACAAAGCATTCCAC 59 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 2 2 2 80 2 243429659 243429678 TACTTGACAAGCCATGGAGG 60 243429718 243431340 GTGAATATCCTTCCAGTTGACC 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 3 4 4 80 4 85682356 85682376 CTCAAGTAGGTGAGATGGTCC 60 85682416 85684390 TTTCTGTCATCCAGACTTGGT 59 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000085132 2 1 2 80 3 112119182 112122237 GAAGGATGTTGTTCCAGCAG 59 112118652 112118674 TTGGACTTCTCTAGTGTTACCTC 59 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 1 2 3 81 19 53496515 53504638 CTATGCCAAGCTGCTTCAC 59 53496452 53496471 GTTCAGCAATCCTCCATACG 59 NA Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 2 2 2 80 10 45905792 45908376 GAAACTCTGGTTGGTCAGC 59 45908419 45908438 AGAGAATGGTTGGAGCTCAG 60 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000080950 2 1 2 81 6 124398053 124398073 CATATAGTCTGCAAGCCACTG 59 124390604 124395522 CTTTGAATTTGCAGAAGTGCC 59 NA Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 2 2 2 81 2 183157305 183157324 TTTGCAGCTGTGAATAGCAG 59 183152005 183157267 CTCCTTCCTGATTAAATACCTTGAC 59 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000067665 1 1 2 83 10 84988061 84988080 GAAGACATCATGCCTGAGAG 58 84988126 84989279 CTTGGTGATCTTGTGCCAG 59 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196 2 1 2 90 3 148438977 148448817 GACAGAAGAGTCAAACTTCCA 58 148454338 148454357 ATAAGCGTGGTCTTGAATCG 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000085291 3 1 2 91 5 163020036 163026155 GCTTTGGACAAACAGAGGT 58 163019963 163019981 AAACCACAATGTGCAACCT 59 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000034772 1 1 2 80 X 68207631 68207652 ATACAAAGACCTCCTCTTTCCA 59 68196573 68207592 AACAGTCAGTATCTCCTTCCT 58 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000034772 2 1 2 80 X 68207631 68207651 TACAAAGACCTCCTCTTTCCA 59 68196572 68207592 AAACAGTCAGTATCTCCTTCCT 59 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000078477 1 1 2 81 1 104636224 104696211 CACCATGAAGCTGATCTACAC 59 104696254 104696272 CTGGAGGTCCTTGATGAGG 59 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633 3 1 2 81 11 71005259 71104342 GAGCATTGTGAAGCTCCAG 59 71104386 71104405 ATTGGTATCAGGACTGGCAG 60 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000081127 2 1 2 80 6 126668025 126668044 AGCTATGAGATCCAGATCCG 59 126665971 126667982 CTTGTGAGGATTCTGCAGG 58 NA Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 1 2 2 80 7 76093044 76096821 CTCTATGACTACTACAAGGTTCCTC 60 76096859 76096877 TTCCTCGTCTTCTTGGCTG 60 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 3 2 2 80 11 83990369 83990387 GGGAAAGTATTCTGTCGCT 57 83990428 83991146 AGACAATCTGATTAGGTGTGAG 58 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601 1 1 2 80 1 188316052 188316070 TCATGGACTTCGTGTTCTC 57 188319077 188319097 TGCTGGATGATTTCATCCC 58 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000020608 3 2 3 84 14 21127747 21127766 ATGGATGGAGAATGGCTCTG 60 21114321 21127700 CCCAAGAGTCTTCATGGGT 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 3 2 2 80 3 60086734 60088293 CTGGTCTCCTTGATCTGGT 58 60086672 60086691 GTTAGCTGTGAGCATGTGAG 59 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000039057 2 1 2 81 2 54813564 54813583 CACTCATCTGAATCCCTCTC 57 54813345 54813523 TTTGGGAAGATTAGAGTGAGTG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 3 2 5 80 1 15835980 15840755 CCGTAGATCAGGATTTGCTG 59 15840797 15840816 GCATTCTTCCAATAACACGG 58 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000091693 1 1 2 80 6 124596636 124598825 ACATGACAAGGCAGTTGAC 58 124596574 124596593 TCAACAGTGAAAGGAGATGC 58 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000091963 2 1 2 179 10 47812990 47824470 CTACCACGGCTCTACTTCC 59 47811272 47811291 CTTTCTTCCAGAGCCATCTG 58 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 2 2 4 121 7 123637577 123637595 CAATGGACTGAAGGCAGTG 59 123637214 123637492 CAAGCACCACACCTTTAGC 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000087088 2 1 7 80 2 186160508 186160528 CTCAGCTGCTAAGTATTCTGG 58 186154352 186160467 GGAGTTCCATTCACTGAAGC 59 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 3 2 2 80 1 199292872 199292960 TGAAGATCACCAATGCTGG 58 199293004 199293022 ACACAAACACCTCACTCTG 58 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 1 2 2 80 7 11275407 11276095 TGAGACAGATGACACGATGG 60 11275346 11275367 TCAATGATTCCGATGTGTAGGA 59 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 1 2 2 86 11 70570517 70570535 AAATGACGAAGAGCAGACG 58 70550961 70570468 TCCTGCTTTACACTTATGGG 57 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622 1 1 2 87 12 41282874 41282893 ACTCTGAGCATCAAGCTGAG 60 41282938 41284812 TTAGCTCATACAGGACATCATAGG 60 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622 2 1 2 89 12 41282872 41282890 GGACTCTGAGCATCAAGCT 60 41282938 41284812 TTAGCTCATACAGGACATCATAGG 60 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000079452 2 1 2 94 9 92382390 92404981 AGGAGGAAGGTCACATTTAGG 59 92382316 92382334 TAGATTGCACTTTGGGTGC 59 NA Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 2 2 2 80 10 47021731 47021749 GTGAAGCACTGGATTTCCT 58 47021793 47025677 AGAGGCCACTCTTTGTAGG 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 2 2 3 94 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956102 37957285 GAGAAAGCAAGACCCAGGA 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458 1 1 2 80 2 244287538 244330135 TATGCTATGATAGCCATTCCCT 59 244287479 244287497 GGATGCCCAGTAACTTCAC 58 NA Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 1 1 1 60 1 98488074 98488095 CTTTACCCTTCTCGTTTATTGC 58 98487791 98487809 CTCTGCATGATCATGTCGG 59 NA DesignNoJunction Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 1 3 3 80 6 127611491 127612384 TAAACAGGCAAACAAGGTCAG 59 127611431 127611454 TCAGGAGTGTCTTCAAGTTATAGG 60 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745 2 1 2 132 8 71509765 71533177 GGACTATTGCTGGAGTTGC 59 71509651 71509669 TAGGGTTCCGTAAGTTCGC 60 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 1 2 2 118 8 104084649 104128493 GGTAACATTTCACTTGTGGC 58 104128571 104145452 GGTGTGCTTATAATCATTTGGG 58 NA Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 3 2 2 80 1 197883671 197883691 CTATTACTGATGTCCGCACAG 59 197883409 197883630 AAGGGCCTTCTACCTTAACC 59 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 1 2 2 80 7 53642213 53645189 TTCTGTGCATGGTTTGCAG 59 53645230 53645251 AGCATGATTTGCAGTAGATCTC 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000075671 2 1 3 80 12 11062642 11062663 GATTCCATCTTATGCTCTTCAC 57 11061176 11062601 TCCTTGCTGAACCTTTCTG 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000044659 2 1 3 80 14 28609615 28609637 CATGGACAAGTTTCCTACATCTC 59 28536243 28609577 GGTAGAAATCCCTCTGACAGG 60 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000032112 2 2 3 89 4 158244479 158316613 GAGAAGGACTTGGAGAGCA 59 158316666 158316684 CAAGAACTCTGCTTCCCTG 58 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000025764 1 1 2 93 3 3854951 3854971 TTACAGGAGATACCTAAGCCC 59 3854874 3854895 AAGGAGGTGCTGATTCCAG 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392 3 1 2 154 12 12765217 12765235 CTGAGAGGAACAATCGGAG 57 12754413 12761945 ATTTCTAGGCTTCAGATCTCTG 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 1 2 4 80 1 200671087 200672160 ATGGTGAATGTCACAGATGC 59 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100 1 1 2 80 16 32386431 32386449 GGAAGAATTCCTACAGCGT 57 32371269 32386388 AGTCTTGCCAGATAAACCAC 58 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 3 3 3 80 6 129631682 129632371 AAGAAGCCTTAATGGTTGCAG 59 129632409 129632431 CTCAGAGTTAACCTGAAGTTGTC 59 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 3 2 2 89 8 71728148 71728166 AGTAGAGGTGCTGTACAGC 59 71727705 71728095 TACCGTTTCTTGATCCGCT 59 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 2 3 3 80 14 33110731 33111751 CTACATAGTAGGAAGAGTCGGA 58 33111791 33111810 TCAGCATCAAACTCAAAGGG 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000089744 3 1 2 80 2 243840142 243841150 TGTTCTTCCAGAGGAAACC 57 243841193 243841212 GCAACCTCCTGATTAGACTC 58 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777 3 1 2 82 18 1285606 1285626 ACCTTTCGGATTCAACTAGTG 58 1280844 1285564 ACCTTCAATTCTTGACTCTGG 58 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 1 2 2 80 3 55969195 55969305 AATAATCAACCTGCTGGAAGAG 59 55969343 55969364 AAGACAACGAAAGTTCTCACAC 60 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768 2 1 2 80 19 39001124 39001142 CCAGCAGTTTATCCAACCT 57 39001185 39014551 AGATTGTCACCTCATGAACC 58 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 1 2 2 80 6 125657738 125657757 GCTCATACTTCTGCTCATGC 59 125656259 125657699 GCTCACATTCATTGATATCCTGG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079738,ENSRNOT00000080419 1 4 12 80 20 3352483 3352675 CAGTATATGTTACAGAAAGAGCGAG 60 3352712 3352731 CAGGAACTTGAGCAGTTTCG 60 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000087636 1 2 3 80 2 62208372 62208503 GATTATTCTCAAAGGCAGCCC 60 62208545 62208563 TGGTCAGTCATTGTTGCCA 60 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000084739 2 1 2 106 19 43356080 43356098 CTAATGCCTGGCATCAAGG 59 43356168 43356873 GCCATAAGCTTCCTCTGGA 59 NA Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 2 2 2 80 7 38919685 38924097 ACACCAATGAAGACTTTCCA 57 38924138 38924158 CATCAAGTTCATGGTCATCAC 57 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515 3 1 2 83 19 42163247 42175296 ACCAACCACAACAAGAAGC 59 42163182 42163203 GAGGTGATACTGCTTATTGGAC 59 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000089801 1 1 2 80 2 189406005 189406023 CAAGTATGAACCGCAGCTC 59 189406066 189406697 TTGTAGCAACTTTGACTCCC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443 1 1 2 80 1 227496069 227498694 GATCCTTCTGTGCACTGAG 58 227496007 227496025 AGGTGACGAAGAAGAGACC 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107 3 1 2 80 8 53417692 53417711 AACGTGGCTGTGTAATACTG 58 53417751 53418393 AGAGATACAACACTAAGAGCCA 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 3 2 2 84 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555762 208556046 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000048252 3 1 2 100 4 56169255 56169274 CACAGATGCTGTGACAGTG 59 56169339 56169358 CAAACTGCAGAGTGACATGG 60 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 1 2 2 80 9 74234375 74235276 ACCAATTTCCAGGTGACCA 59 74235318 74235338 GTAGTGGAACAGACTCTTGGA 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828 3 1 3 80 10 67492 68273 TCCATCTCAGAACAGGACC 58 68317 68335 CACAGAGAAGGTCAACAGG 58 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850 3 1 3 80 X 72398391 72402611 GATGTTCAGCTGAAGAAGCC 59 72398330 72398348 TGAGGATGTGATGCAGGAG 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000017323 1 1 2 81 4 120295691 120295709 GATGACTGGGACCATCCTC 59 120233422 120295648 CACTTTCTTCACCACCTTGAG 59 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 2 2 2 88 7 119144993 119154125 GAGTACGAGGTGTCTGCTG 60 119144923 119144941 TGGTCTTCGTCCTTGATCC 59 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 3 2 2 89 7 119144995 119154127 TTGAGTACGAGGTGTCTGC 60 119144924 119144942 GGTCTTCGTCCTTGATCCC 60 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844 3 1 2 81 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838631 43839358 CCCAACAATGACTCTTCCTG 59 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 1 2 2 68 8 21480223 21480241 ACATATCCAACGGGATGCA 59 21479597 21479615 ATTGTGTCCCGTCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 2 2 2 69 8 21480224 21480242 AACATATCCAACGGGATGC 58 21479597 21479615 ATTGTGTCCCGTCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 1 2 3 80 18 72571603 72593008 CCATACCAAGCACTTGCTC 59 72593052 72593070 TGTAAAGGCCTGTTGTGTC 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 2 2 8 80 6 128050870 128052894 CCTATTTAAAGGCAAGATGCAG 58 128052935 128052953 GGGATCAAAGAGTCCTTCC 57 NA Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 1 2 2 80 1 101413103 101413121 GCAGAGAATGAGTTCTGCC 59 101413164 101413411 TACTCGAACCATGCTAGGAC 59 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970 3 1 2 139 8 79685458 79687524 GCTCTAGATTTCAAGTCATCGA 58 79687621 79687642 TCTTCCTTCTCCAGAGATAGTC 58 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 1 2 2 83 2 208398701 208398719 TCCTCATCAAGAGCTGCAG 60 208398123 208398406 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274 3 1 2 82 7 125960223 125960241 TCAGGACTGTGCAAAGAGG 60 125960284 125963171 CAGCATCATCAGTATCTGACTG 59 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086 3 1 2 80 15 61879868 61879887 AACAGAATCCAGATGACGCA 60 61879926 61880487 CAATACCATCACAGTATTTCCCG 60 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 1 2 2 80 8 94841370 94841391 CTGACTATACCTGGGAATACGA 59 94841430 94850097 CGATGGAATATTTGTGAGCCT 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000012397 3 1 2 122 4 152243754 152243773 CGAATCTGAAGCACAAGGAG 59 152214561 152243669 TCAACAGCTCTTCCACCTG 60 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 2 2 2 88 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789125 AGTACAATTTGTGGCCAGC 59 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000042506 2 1 2 127 10 72171217 72175227 ACCTAAACCTTTGGGAGGA 58 72171108 72171126 TGTGCTTTCGAAGATACGT 57 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346 3 1 2 83 11 87422488 87424014 ACTTCGGGTTCTGATTATTTCC 59 87422426 87422444 GATTTGTTGCTCCGGACAG 59 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000075041 2 1 2 137 10 109964975 109964993 GGAGAACTTGCAGAAGCTG 59 109964467 109964572 GACTGAAACCGTGTAGGGT 59 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 1 2 2 80 1 218725621 218727744 CTCATCAAAGGTCTTCCCGA 60 218725560 218725578 CCTCTTGTTCGCTTCTCCT 59 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600 3 1 2 81 14 77329725 77332454 GTCTCATACAGGTGAGAAACC 58 77338365 77338384 TAAGTGAGTCTGAAGGTTGC 58 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 3 2 2 86 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404203 108417990 TTGATCATTCCTCCCTGCTG 60 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 3 3 3 81 11 73702773 73702794 AGGAGAGCCAGAGAATTAAGAG 59 73702834 73703244 TTTCTGTCCCAATTTGGTCTC 59 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 2 2 2 133 5 169296481 169300942 GGAGGAAGGAAGAAGAGGAG 59 169294257 169294275 GATTTCCTCCAGCTTCTGC 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 2 2 2 80 10 13736555 13736682 TACTCTGAAGAAACGGAAGGT 59 13736724 13736742 AGCCAAATCAGGATCCCAG 60 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000079700 2 1 2 80 10 13773506 13773524 CATTGAGACCAACCTGCTG 59 13773568 13775351 TTCTGCAATTCTGCCAGAG 58 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000087305 1 1 2 80 13 109442305 109442325 GGAAGATGACTATGAAGCAGC 59 109418226 109442264 CTCGACTCTCCTTGTACACC 60 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 2 2 2 101 4 162281732 162397228 AATTCCTCACAGTGAAATGCTC 59 162397290 162397308 CTGAGGACCACGATCACTG 60 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 1 2 2 101 4 162392945 162392963 CCTTGAGGCAGAGTAGCAG 60 162393026 162397232 CTTGGAGCATTTCACTGTGAG 60 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512 3 1 3 86 13 49398902 49402570 CAAAGTCCTCACCAACAACC 59 49391815 49391833 GTTCTTTCCGCAACTCCTC 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000009977 1 1 2 80 5 124212392 124212411 ATAAGCAGTGTGAACAAGCC 59 124212939 124214419 CAAACACAATGTACTGGTACAC 58 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 2 2 2 80 2 256680123 256680142 GTGGAAGGTTATCAGACCTC 57 256680185 256682939 GCACTCGTCTACATCTTGG 58 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 1 4 4 94 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503412 105503430 GATTCATGGGTGACAGCTG 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671 2 1 2 80 4 100765963 100767017 CATGGATCCTATAGCTGAGCT 59 100765903 100765921 GGGCCTGAAGAGTTAAGCT 59 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 3 2 2 80 3 11353111 11353129 GACTTCATAGGCTTTGCCA 58 11352637 11352881 AATCTCATCCTGGTTCCCT 58 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 1 2 2 80 14 86394419 86394438 TGACCATCAGATTTGTCTGC 58 86394131 86394377 ATATCCAAGTGTACACGCAG 58 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076496 3 1 3 87 X 70566336 70566549 GCATCCTTGCTATTGCTCC 59 70566600 70566618 CAAGTCACTGCACCTTGTG 59 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000080575 2 1 3 83 4 51930810 51931111 TTTCTCTAGTTCCGGTAACTCC 59 51930748 51930767 CAACACCATAGACATTGGCA 59 NA Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 1 2 2 124 18 2425170 2425192 GGCTTTATATGAAACTCCATGGG 60 2426447 2426552 AACAGAGCTGTTACCGGAG 59 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 2 2 2 81 6 135282101 135283469 TCCTTCTGGTGAAGGTTGAG 59 135283510 135283531 TCATACAGCTGTTCAAACTCCT 60 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 2 3 3 80 3 21850539 21850561 GGTCTCAAGTATGAACTCATCTC 59 21844842 21850502 CTGTCCATCTACTTCTACCTCC 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 3 3 3 80 3 21850539 21850562 AGGTCTCAAGTATGAACTCATCTC 60 21844843 21850503 TGTCCATCTACTTCTACCTCCA 60 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595 2 1 2 118 6 93519022 93519042 TTCGTCAAACATGCCATACAG 59 93519122 93521143 CAGATGAGCACGAGTTGGA 60 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358 1 1 2 80 2 260335678 260335697 AGTTCGAGGATCAAGACCTG 59 260402279 260444239 CCGTAGAACTCCTCTTCGT 59 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358 3 1 2 80 2 260444234 260444252 CTACGGACGTTATGTGCTG 58 260444296 260476905 CATGTACCCAAGCCAAGAG 58 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000004966 3 1 2 91 10 108630897 108639108 TGGAAAGGGTGCTGTATGAG 60 108639162 108639180 CAGGAAAGGTACCTCTCGG 59 NA InUTR Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528,ENSRNOT00000087320 2 2 3 104 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034754 51035436 GTACCCATTCTGAGGCTCC 60 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000079694 3 1 3 81 2 240652227 240652245 GCTATGTGATCCAAACCCA 58 240652286 240652773 CCTATTGTACTTGTCTCTGTCTG 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 3 2 5 114 20 4043788 4043807 TTAGAGATGGCTCTGCAGAC 59 4043883 4045246 GGAATACGAAATCCCTTGGG 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000064780 2 1 3 90 X 142129523 142164078 TCGTATTCAGAGCCTCAGC 59 142129451 142129469 CAATGGTTCCATCTGCCTG 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000077402 1 1 3 138 X 142131466 142131484 AATCCAATGCCTGCAAGTG 59 142129519 142131364 TTAAGCTGAGGCTCTGGTC 59 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000088697 2 1 2 107 10 94475390 94475408 TACCATTCAGGCCATGGAG 59 94475476 94475887 CTTCTAAAGGTGTAGACATGCA 58 NA Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 3 2 2 80 7 130143807 130143828 ACCTGTTGAAGTTTGAAGAGAC 59 130143430 130143766 CATCGTGGGATAGCTTTGG 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000029615 3 1 2 123 15 4155084 4155102 TGCTGCTCTATGCAGATCC 60 4155189 4160929 CTGTCAGTCAGGTGTCCTG 60 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 1 2 2 80 7 142326898 142326916 CTGGTACCTGCACAATGTC 59 142326487 142326855 CCGAGATTCTTGATAGCTCC 58 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000002020 1 1 3 92 12 25447472 25452061 ACATTCAAGGAAGCCATCAC 59 25453985 25454005 TTTCTGAAGGGACATGTTGAG 58 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166 3 1 2 87 4 109474604 109475500 GGGTACAAGGTGAACAATCAC 59 109474535 109474556 AAATAGCAATAGGAACCACAGG 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857 1 1 3 87 18 73226642 73226660 TTGTACTCCCTGATGCAGG 59 73226711 73235085 CCCAGCCAATGTTCTTGAG 59 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 3 1 1 60 4 56450458 56450476 CTCAATCAAGACCACACCA 57 56444897 56444915 TTCGTCTGGGTCAGAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000078394 3 1 2 86 11 88092751 88093465 CCTGAAACTCAAGCCAGGA 60 88092683 88092701 GCGGGCAATAACCAAAGTC 60 NA InUTR Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943 1 1 2 80 7 139673755 139673774 ACTCTACACCGAGCTTTCAC 60 139668509 139673715 GTCTGAGGAAGGGTTATCTGAG 60 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 3 2 2 80 9 100970150 100971213 CAGAGGAAAGTCCAGATGC 58 100971257 100971275 ATACTTGAACACGTAGCCG 58 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 2 2 2 80 11 80760468 80760487 ACTTTCCGGTCAGATTTCTC 58 80760529 80761659 GCACTCATCCACATCTACAG 58 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 1 2 2 87 12 25005363 25005381 GGGATTGGAGGCATTACAG 58 25005516 25006512 CAGCAGCTCCATACTTAGC 58 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 2 2 2 99 8 117065067 117065515 CTGTTCAAGCACCAGATGC 60 117065578 117065596 CCTCCACGGAGAAAGACAG 60 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000087220 3 1 3 87 20 34656745 34684323 ATTTCAGCAAGTGTGGCTC 59 34656676 34656694 GGGTTAGATGGAACAGCTG 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122 3 1 2 81 7 12164272 12164290 CGAGGAGGTCACATCAGTG 60 12164334 12167377 ATCTGTACTGCTGGTACGTG 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000027987 2 1 2 88 1 87187962 87187981 GCTCCAGACCTCTACATTCC 60 87188141 87188984 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000027987 3 1 2 96 1 87187954 87187973 ACATCAATGCTCCAGACCTC 60 87188141 87188984 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471 1 1 2 88 20 34894586 34899854 GTCTGAAGACTTGGAGTGG 58 34899906 34899924 GACCCACTAACACAGAGTC 57 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000084420 1 1 2 89 20 34895144 34899853 AGAGAAACGACTTGGAGTG 57 34899906 34899924 GACCCACTAACACAGAGTC 57 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000091557 3 1 3 80 18 15494223 15494553 TCTTCATGCTCTGCAATATTGG 59 15494592 15494612 CTTGTATTATTGCCTTCGGGA 58 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031 3 1 2 85 5 59412865 59412884 GTACTTGAGCATCGAGTCAG 58 59412932 59413642 TATTGCAGGCCTCAATCTG 58 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 2 2 2 81 6 136749133 136749271 CATGTACCCTACAGGGACC 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 1 2 5 80 6 80235407 80235430 GCTTAGAGTCATCTTTAAAGGAGG 59 80235467 80237051 GTGATCCTTCAACAAACTCCA 59 NA Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 1 2 2 86 7 60135865 60135883 CATCCTTCTGTGGGAAGTG 58 60134034 60135817 AGTATGTACTTGTTCCTCAGC 58 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 2 3 3 89 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589941 31589960 CATGTTACAGGGAATGAGGC 59 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255 2 1 2 89 10 35712039 35712057 CTGCTCCATCAGAGGATCC 59 35707560 35711986 CAACCTCGATGCCTAGAGG 60 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506 2 1 2 158 2 85744233 85753808 ACAGGGAGGAAAGATACTGC 59 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000074573 2 1 2 80 7 106881343 106981164 AGTCATAAGACCGTCCTGC 59 106752739 106752757 CAAAGCAAACTCAGCTCCA 59 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000084218 2 1 3 82 X 10128312 10129911 AAGGACGACAGATCTATGTAAGAG 60 10129952 10129970 GATGCCAGCTTCTTTGCAG 60 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716 3 1 2 98 6 72487112 72487131 TTGGAGTTAATGACACGGAG 58 72489155 72503022 AGAGAAAGACCACTCTGCT 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000008074 1 1 5 80 8 6140370 6152366 ATTTCGGCAGGAATTAGCTC 59 6140309 6140328 GGAGAAGACACTGCATTCTG 59 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 1 2 2 177 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428691 12429721 ATCAAAGAACACCTGCGTC 59 NA InUTR Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000003928 3 1 3 80 13 72367759 72367777 ATCCCTGTTCATCTTCGGA 58 72343012 72367715 ATGTACTCAAATGGTGGCC 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000047854 2 1 2 80 5 173610905 173610923 TGCAACATCTGCTTGATCC 59 173610410 173610861 TCCAGGTTTGTAGTTGCTG 58 NA Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 1 2 2 80 2 198833646 198833830 ACTTCCAATCCAGAGACCC 59 198833584 198833603 TCCACACCTCTATTTGTGGA 58 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000080701 1 1 2 80 5 126863506 126864623 GAGTTTAGTCCAGGCTACAC 58 126864666 126864684 GCCAGAATCACTTCTGTCC 58 NA Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150 1 1 2 140 17 89923570 89923588 AGAGATGCTCTTCCTCTCG 58 89881467 89881487 GTTTCATACACTGATCGTGTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000002010 2 2 3 80 12 25350154 25363306 TCATCCCAAAGCCTGATGAG 60 25363349 25363367 TGAAGAGCTCCTTCACCTG 59 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000030470 2 1 2 80 6 101612907 101636735 TCTTGCTGCAAAGATTCCAG 59 101636778 101636796 GTAGTGCTAAGGGAGGCTG 60 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000048980 2 1 2 103 X 10526432 10527721 AATATCAGCAGCCCTATACAGG 60 10526350 10526368 GGACACTTCTTCACTGCCT 60 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302 3 1 3 80 1 189974765 189975000 GTTTCTAGAAGTTGGTTCTCTACC 59 189975853 189975871 ATACATACGACCAAAGCGC 58 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311 2 1 2 104 10 59868436 59871369 TCCTAATCTGCAGCTGGAG 59 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000050676,ENSRNOT00000049917 2 2 3 110 14 760108 761782 CATTGGACATCCCAACAAGG 59 760017 760035 GCCATGACCACAGTTACTG 59 NA Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 2 1 1 62 4 163095330 163095348 CACCACCGGTTAACATTCG 59 163094809 163094829 AACACCAATTACCAGGATCCA 60 NA DesignNoJunction Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000081679 3 1 2 138 8 17496895 17496913 TTACAATATTGGGCCTGGC 58 17485229 17485508 GAATGACATACCAGGCTCTG 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051 1 1 2 104 7 144266570 144266588 CAAGTTCATTGGAGCTGGG 59 144264478 144266503 AAGAGAAGACTGGCATAGCC 60 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000078987 3 1 2 90 9 92628694 92628713 TCACAGGACTGTACAAAGGA 58 92628763 92629169 TGCTTGTGTATAATCACCTTCC 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 1 2 2 80 4 86139250 86141460 AGACTATATGAGATCTCTGCACC 59 86141497 86141518 GAGGAATAGCAAGAGTTGAGAC 59 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 1 2 2 80 1 209796978 209797090 TATACTGGAGGATGAAGAAGTGC 60 209797129 209797148 CCTCTCACATACAGCTGAGG 60 NA Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 2 2 2 80 14 38010392 38012932 GGACAGAAGACAAGGAAGG 58 38012974 38012994 ACTTTGTGTAAAGGGAGACTG 58 NA Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 3 2 2 80 14 38018635 38019744 CTGGCTTCAGCTATGATAAGTG 59 38019785 38019803 CTCCAAAGAGTCCACTCCC 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 1 4 4 104 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831507 215831525 CAGTATGTCTCCAGGAGGG 59 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072396 2 1 2 81 5 129257653 129257927 ACGATTGTGAAGGGTCTCC 59 129257971 129257990 TTGGTAAGGAAGAGGTCCAG 59 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 2 2 2 80 15 33382929 33383506 CCTTACAAGAACCTTCCTAGAG 58 33382870 33382891 ATAGGCGATATTAGCAAAGACG 59 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 1 2 2 80 1 80345147 80345806 CAAGAGAATTGAGGTGATGGT 58 80345087 80345105 TCGTTGTACTTCTGGTTGG 57 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179 2 1 2 80 5 165933328 165934293 CTAGTCAGGATTTAGAGTCGG 57 165934335 165934353 CTGCCTTCTTTATGTCCCA 57 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363 3 1 2 127 16 24978573 24980916 TGCCTAAAGGACTGAAAGC 58 24981006 24982624 CTCCGTCTTCAATCTTTCCT 57 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 3 3 3 80 5 173479581 173480056 CACTCTGTTTGATGAAACCCA 59 173479521 173479540 CTCCTGATCAGAAAGATGCC 58 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221 1 1 2 80 7 11685442 11685460 ATCCAGACATTTCTGCGGA 59 11684996 11685400 AGTTTGGTGTGGTTGAAACAG 60 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000064836 1 1 2 135 1 8857101 8878041 CTACTACTCTTAAGAAACAGTTGGG 59 8856990 8857008 TTGTGAAATCGTCCAGCTC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611 3 1 3 84 17 6169873 6169891 CTGTGGTAGGATTCTGCCT 59 6076041 6169827 CATGAGACATCTTTCATGCCA 59 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 3 2 2 84 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861228 58861247 GAATTTCTTCAGCTCGTGGA 58 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 2 2 2 81 13 52860361 52860380 CATGATGTGGAAGCCTACTG 59 52860422 52863397 TGACGATAATGACCTTGATGG 58 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 3 2 2 128 5 166915700 166923309 AACGGACTTGATCCTGAGC 60 166915590 166915608 GAGGTAGGCTTTGAGGGAG 59 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334 1 1 2 82 12 36970819 36981000 CAAGAGTCAGCAGCAACAG 59 36981046 36981064 TCTCCTCCTTCTCCTCCTG 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 1 2 2 80 2 266146428 266146446 CTGTTTGATGGACAAGCCC 59 266146490 266153477 AGTGCGGATGAATCTCCTG 60 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000086509 1 1 4 80 8 117890875 117890896 AAATCCTTTCCTATCTGGATGC 58 117889601 117890834 CAGTTGCAATCCCAAGGAG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 3 4 8 80 1 226463307 226463325 CAAGAACTCCTTGGAGACG 58 226463369 226467009 CTGTCTAGGTCGTTGATGG 57 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 3 2 2 81 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314807 105314826 ACAGAGAAGATGACGAACCC 60 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000073341 1 1 2 87 4 156993331 156993349 CCATCCTGAGGAGGATCTG 59 156992875 156993282 TTTCAGGAACTCAGAGTTAGC 58 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000073341 2 1 2 88 4 156993331 156993349 CCATCCTGAGGAGGATCTG 59 156992874 156993282 ATTTCAGGAACTCAGAGTTAGC 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000044638 1 1 7 88 3 48198912 48198930 TTTCTCCTCAGTCTGCTCC 59 48198980 48204882 AAGATCAACCTTGCTGAAGTC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 1 2 2 80 10 88699368 88699465 CCACTTCAGAAACATGTCCC 59 88699307 88699326 GTGAACTTCTCTTCCGTGAC 59 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000080404 2 1 2 83 10 17498158 17499876 CAGAGGCAGGAGAGTATGC 60 17510923 17510942 CTGCTTGGCTACAAAGTCTC 59 NA Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000058803 3 1 2 80 14 71105116 71110765 TCCACTCAGGATGTGATGG 59 71110808 71110827 AGTGATTAGCCTTTCGTCCT 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450 1 1 2 83 10 107319234 107319256 TCAGTGCTTGACTTACACG 58 107314303 107314321 CAGAAGCTTCCTTGGTGAC 59 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000007259 2 1 2 81 6 42857732 42857752 TGCTGCTTCTACTTTCAATGG 59 42857795 42858297 TTGCTTCATGAGTTGCCAC 59 NA Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 2 2 2 150 14 1779186 1782625 TCATTCCATGATGCCAAAGG 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286,ENSRNOT00000041442 2 3 3 60 6 100002677 100002695 GGACTCAGTCCCATCACTC 59 99987019 99987038 TGCTTTGTCTAGGATTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452 3 1 2 81 2 252805690 252805710 TCCTAATCTATTCCAGAGCCA 58 252805753 252807938 GAACGCCTCATGGAATCTG 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071741 1 1 3 81 1 217565141 217565159 AGCGGAATTGGAGGAACTC 60 217566587 217573334 GACTATCTCTTCCGGTTTATCCT 59 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 2 2 2 83 10 104616345 104616363 CTATCGAGCCTCTGAGCAG 60 104616105 104616299 TCACTGGAACCATTGGAGTC 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 2 3 3 80 13 57059542 57061983 TACATGTGATGAAGGGTACCA 59 57059482 57059501 GGAATATCATTGGTCCACCC 58 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000035129 2 1 3 88 13 56115333 56120375 TTGAGTGTGAACCAAGAGC 58 56121585 56121604 GGTGTGATGAAACAGGAGTG 59 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000080303 1 1 2 92 5 90971983 90975849 GTCAATTCAAACGTGAAGTCCA 60 90975899 90975920 GCTGTAGTACCGAGTATTTCGA 60 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 2 2 2 80 5 4469563 4469581 TGGACTGCGAATGGAAGAG 60 4469623 4495039 ACTTGGTCACACTCTTCTAGG 59 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000013073 3 1 3 80 4 61781338 61781359 GATGACCCTTCACTATTACAGG 58 61781400 61782099 AATAAGAACCTGGGCTGTG 57 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176 2 1 2 84 2 203817727 203817745 GGAGTATGAATGCCACACC 58 203817793 203820127 ATCTGGGATCACCACTAGG 58 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118 1 1 2 81 4 27247453 27247471 GGAAGAGGAACGAGAGCTG 60 27244947 27247410 CTGTAGAAATTGCTGCTCCAC 60 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 1 1 1 60 5 58198206 58198226 AAGTCTGGGAAGAAAGGAAGG 60 58198083 58198102 TGGAGTCTGTCTGTTCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261 3 1 2 81 5 135257451 135257469 AATCTCTTGGACAGTCTGC 57 135216685 135234810 GTAGAGATTAAGCTGCCTCTC 58 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000015935 3 1 2 81 6 136358090 136358108 TGGTCAAGTACGAGAGTGG 59 136358151 136362506 AGCTTCATCTTTCTCATCCCA 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 1 2 5 88 10 56195688 56195706 TACATGTGCAACAGCTCCT 59 56195757 56196087 AGAAGATTCCCACTGGAGTC 59 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000009666 3 1 2 92 6 76188204 76196121 CGACTCTACCAAGTAGAATATGCT 60 76196172 76196190 GACAATAACTGCGCAGTCC 59 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000017195 2 1 2 80 13 56874851 56874870 AAGTTCCTTCTGGAATCCCA 59 56873876 56874811 GGAAAGAAGCAGATCCTTAGAC 59 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000048344 3 1 2 81 16 6971766 6971784 TAGAGCTACCCAGGAAAGC 59 6973419 6973439 CTTCTCTTTGACAACCCTGG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746 3 1 2 84 12 39371179 39371197 CCTCAGTGTCCCATCTTCC 60 39369504 39371131 TGATTCCTCCCTGAACTGC 59 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 1 2 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11073740 11075498 GTCAACTCCATGATGTACTCC 58 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377 3 1 2 81 4 62260104 62260122 GGAAAGGGAGTTAAAGGGC 58 62260163 62265584 CATCTTTGATCTCTTCCCTTCTG 59 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000077898 3 1 2 116 2 203386784 203386802 TATATTGGTGCAGGGTGGC 60 203385167 203386704 TGGAATATCCTGAGCGCAG 60 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140 3 1 2 122 2 203386784 203386802 TATATTGGTGCAGGGTGGC 60 203376808 203386699 AAGAGAACGTGGACTCTGAG 59 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501,ENSRNOT00000045647 2 2 2 63 7 130542280 130542298 AAGGATAACACCACGTGTG 58 130543233 130543251 TACCTGCTTGTGGGTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000040334 1 1 3 86 X 71193905 71193924 ATAAGACCTCTGTGTACCGG 59 71193973 71194161 ACATTCCCTGACTCTGCTG 59 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 1 2 2 80 4 57943729 57943748 CACAGCTACTCTCAGATGGT 59 57943788 57944097 AAGCTCGAACAGTTCTTTATGG 59 NA Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 2 2 2 80 9 16655692 16655710 AGCTATCTATGAGCGCCAG 59 16655753 16656089 TTTAGGTAGCAGGAAGCCAG 60 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000064105 3 1 2 92 19 12553402 12553420 ATCAGCTTCCCTGCTTCTG 60 12504771 12553352 CATCTGTAGTCTTTAAATCGGACAC 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 3 1 18 61 1 43475882 43475902 AACTTCCTGGTCATGTATGTG 58 43527511 43527529 CAATGGAGCAGTTTCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 1 1 18 60 1 43508749 43508767 TGGATCGAACTAACCACCA 58 43518487 43518506 CCCAGTTCTGTGTATATGCC 58 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 9 18 60 1 43508740 43508763 CTAATACAGTGGATCGAACTAACC 59 43527510 43527528 AATGGAGCAGTTTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000083693 2 1 2 81 13 57380132 57403481 CTCTAGAGGGCAAGAAGGG 59 57403523 57403544 GTGGTAGACTTCATTTCCTGAG 59 NA Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 1 2 2 107 17 10758182 10758749 CAGCAGATTCGAGATAAGTATGG 59 10758097 10758115 CTTCTTGGGTCTGGTCAGG 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 1 1 2 95 16 3759117 3759598 ACCCAGAGTTAAAGAAGCTG 58 3759041 3759060 CCTGGGAATCGATTCTTCTC 58 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660 2 1 2 83 9 17107083 17107101 CTGCAGAACAGCTACACAG 59 17107146 17108138 CATCTCAGCCTTCTTGATCAG 59 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000018763 2 1 3 112 1 233125890 233125911 CTCAACATGATCTCCTTGAAGG 59 233124158 233125052 AAAGACCTCAGGAAGGCAG 59 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 3 2 2 80 13 55498854 55498878 CTCTGTGTAAGAAGATAGAACAGTG 59 55488680 55498817 TAACTAACTGTCGGAGCTCC 59 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000089747 2 1 2 83 4 21541925 21551026 CCTATTCTCAGTATCCTCCTTCC 59 21551069 21551087 CTTGTCTCTTGGTGCTGTG 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289 3 1 2 102 X 15160286 15160522 ATTCAGCTGAACAAGACCC 58 15160588 15160606 TCTGCATGACATGCATCAG 58 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000078274 1 1 4 84 5 58684244 58684262 CTCTATGGCATCGACAGCA 60 58684310 58686362 ACTGGACCAGTGACTTCAC 59 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 3 1 2 80 1 85499901 85500000 GATCCATTCCAAGAAGAAAGGC 60 85500038 85500059 ATCTCTTCATCAATAGCACCCA 59 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 2 2 2 99 4 7259172 7259190 ATGACTCTGAACAGGTGGC 60 7259525 7259544 TAGATGAGTCGAACCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027 2 1 2 83 8 22988822 22988841 TTGGTTATGCTGGATACAGC 58 22988461 22988564 GATCTCCCACTCCTTCCTC 59 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713 2 1 2 80 13 69766152 69766172 CCATAGTGGAGTCAGATTCCA 59 69765630 69766113 GAGAAATATTCTGAGGGTCTGG 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985 3 1 2 81 12 37706799 37707370 GAGTTTAATGACCTCTGGAAGAG 59 37710348 37710366 AATCACACTGAAGAGCTGC 58 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 1 2 2 80 8 25880852 25889870 AACCAACTGATAACCAAGCTG 59 25880792 25880810 GATGTCAGTGAGCCTGGAG 60 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904 3 1 2 83 6 24160240 24163037 CATTCACTGCTCTGACTATCTG 59 24163081 24163099 CTGAGGCCAATCTCTTCCA 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 1 2 2 80 19 10756663 10756684 AAGTACATTGAAGAGCAGTTGC 60 10756079 10756622 TTTATGGTGCTGCAGTGTG 59 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 1 1 1 60 7 5655686 5655705 GACAGATGACCAACAACTGC 60 5657551 5657571 CAGTGAGTAGGTGAAGAAGAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402 2 1 2 104 10 49025010 49027503 TTCACAAGCTGGTTCATGG 58 49027798 49027816 AACAAATCCCTGAGAGCGA 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 2 2 3 87 3 29868408 29868429 GTATGCATGTGACTTATGTGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000066780 1 2 3 80 2 257468636 257472139 GAGCTGAGCAGATTGAGGA 59 257467316 257467339 CTGTTATAAGGAGTGAGTCATCTC 58 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000092104 2 1 3 200 5 12504491 12526915 GAAGGTTGCATATGATTGCTC 58 12498748 12504329 ACGATTTCATCTGCAGTGG 58 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 3 2 3 81 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504496 12524951 ATCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183 3 1 2 80 1 277091124 277093129 ATGAAGACGATGATCCATGC 58 277093172 277093190 TGCAACTGAAGGTATTCCC 57 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 3 2 2 94 10 56768862 56769030 AGAAAGGCTTTACGCACTG 59 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 1 3 3 80 1 135354891 135360195 TGTCATAAGGTGCAACCTG 58 135354829 135354847 GGGTTCATGGTCACTAGGT 59 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 3 2 2 145 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309112 42309130 GAAGAAGTCCATGTGGCTG 59 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 2 2 2 93 7 121311156 121328653 GTGTCTTGGGTCTTCTCCA 59 121328709 121328728 TGTAGATGCAGAACTCCTCC 59 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000037589 3 1 2 87 3 149339637 149339656 CACGTATAACCACGACAAGG 59 149338246 149339587 AGGTGTAACACTGGGATCC 59 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 2 2 2 80 X 156434861 156435189 TTAGTTCAGATCCTAGCCCG 59 156435228 156435250 TAGAAAGAGGACAGTATTCTGGG 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 3 2 2 80 7 66676180 66676200 AGAGATTCTCCTATAGTCGCT 57 66676241 66678441 CCGACATATCCAAGTCACTG 58 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 3 2 2 82 4 68640022 68640511 CATACCAAATGGGTGACGTC 59 68640555 68640574 ATAAGCCACATCTCTGAGGC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000085762 3 1 7 82 19 15189765 15192623 CTAGGAATGGAATTCCAACTGG 59 15192666 15192687 GCCAATCTGAAGATAACCTTCC 59 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 3 2 2 80 7 70527906 70529225 GATTAAGCTGCCTGTGGAG 58 70527844 70527866 GACTTGATCTTGCTGATGTAGAG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 3 3 4 80 14 79355837 79387344 CTTCACAAGGAATTTGCTTGC 59 79387385 79387404 TTTCCAAACAGCTTCCATCC 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 3 2 2 80 10 56860217 56861089 GAAAGAACTCAAGGATGGATGC 60 56860158 56860177 TCTCCTCGGATCACATTAGC 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 3 1 4 85 4 167353567 167353587 CAGATTCAGATCTCCCTTCTG 58 167353634 167371302 AGAAGGCTCTTCATTTGCT 57 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823 1 1 2 80 1 225937569 225937587 GCAGCAGTGTCATGAAGTC 59 225932030 225937048 GCTCCTTCTCAACAAAGCTG 60 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823 2 1 2 80 1 225937568 225937586 CAGCAGTGTCATGAAGTCC 59 225932029 225937046 CGCTCCTTCTCAACAAAGC 60 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456 1 1 4 80 2 18522665 18544071 ACAAGACAGGACCTGATCTC 59 18522604 18522625 ACACATAGGAAGTCTCAGTAGG 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000045165 1 1 4 82 1 139943442 139943463 AACCTTCTAGTGAAGATTGGAG 58 139903195 139943400 CCAGATGGATTAAAGAGCCT 57 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 1 2 2 80 3 119061206 119061224 TTCGCTCCATTAAGCTGTG 58 119058774 119061162 TGTCTGTACCGTGTCTGAC 59 NA Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000012880 3 1 2 93 X 15616119 15616623 CTCTGGCAGATACTACACGG 60 15616679 15616697 AGAACTGGAAGACTGCTCC 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 2 2 2 80 8 54973649 54973668 ATGATGGGAGAAGCCTAGAC 59 54969925 54973609 TTGCCTTATAGACCTGATCGAG 60 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250 2 2 3 80 7 107130756 107141725 AACAAAGCCCAGAAGAAAGC 59 107130695 107130716 ACTATAGTAGACACATCAGGGC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000079769 1 3 4 83 14 80071062 80071080 GTCAGTCTCTGTCCCTCAG 59 80062915 80071015 AAGGGAAGCGTGAGTAGAG 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000074793 1 1 3 81 7 135550884 135550902 GTACGATGGGAACAAGCAG 59 135550820 135550839 GGGTAGAGCTTCTCCTACC 58 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403 2 1 2 107 13 84064196 84064215 ATCTACGGAGTCATCGTCAC 59 84065446 84066439 GTTGAGCTCGTTATAGAGCTG 59 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 3 2 2 80 5 59517452 59517782 ATTCTGGGAGTAGGCATCTC 59 59517391 59517409 CTGTATCAGCTTGGTCGAG 58 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 2 2 2 80 2 122625542 122628090 CATGACAGAGTTAGGATGTGAC 59 122625483 122625503 CCTGGTTCTTTCAATTCTTGC 58 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 1 2 3 80 X 15756745 15756763 CTTCAGACAGCTTGTTTGC 58 15756026 15756701 TGTTGTGGAAGAACTCTGG 57 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 1 2 2 60 9 19452839 19452857 CAATCGCACTGAACACGTC 60 19454533 19454552 GGCAGTGAATTGTCATAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 3 3 3 80 4 165986751 165988389 TGGCTCAGATGAAGAGGTC 59 165985856 165985875 TGACCATGTTTCTGGTTCTG 58 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000078044 1 1 3 102 6 3373063 3395690 TTTCGAGTGTTTCAGGCAC 59 3355309 3355327 TTTCTTGCTGTACAACCGC 59 NA Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000027064 3 1 2 105 9 82637043 82637061 CGACATCATCAACTGTGGC 59 82637130 82638098 TGGAGATTCCTCCAGTTGC 59 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973 2 1 2 83 10 109604600 109609945 GGCCGAGAGGATCATAATCC 60 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169 1 1 2 80 13 74436042 74436061 GGCTGTTACTATTCAAGGCG 59 74433809 74436001 TTTGTCCAAGATGCTACTGTG 59 NA Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 2 2 2 80 8 58089853 58089871 CCAGAGTTGGTTCACTGAG 58 58088770 58089811 TCTTGTTTAGAGTGTGCTTGG 59 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 2 2 2 80 2 207360266 207368507 CCTTCAGACACAGTTATGCAG 59 207368548 207368567 CTCTAAAGCTTGGTAGGCTG 58 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 2 2 2 80 3 35181018 35181036 TTGCTGTTCTCCTTCAGTC 57 35181078 35190516 TTCTTGATGGTCTTTGCTCTC 58 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 2 2 2 80 6 7920270 7924075 TCGCTGATGTTTACCAGCA 60 7924116 7924137 ATCAATACCAAATGCCAACTGG 60 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 3 1 2 91 2 118990963 119007792 GGAATCAGATCCAGGATGCT 59 118989247 118989265 CATTTGTATTCGGCCCACG 60 NA Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 1 2 2 60 16 18640725 18640749 CAGGAATATAACCAAAGCTGAAGAG 60 18640365 18640386 CACTTCTTGAAGTTGTAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277 1 1 2 80 4 67362049 67365127 CATGGTCCAACAGACAGAC 58 67365171 67365189 ACAGATGCCATGTTCTGGA 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 3 3 3 80 7 2470143 2470293 GAAGAGGAGGTTGATGAAACG 59 2470333 2470353 CTTTGCTCTTGACACATTTGC 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386 2 1 2 90 1 239442199 239442217 TCATCGACAGACTCATTGC 58 239442270 239443440 TCTGCAAATGCTGAATTCTG 57 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000049303 3 3 5 80 4 176287327 176287346 GTTGGATGTGCAGTTATGGG 59 176282114 176287287 TGTTTCATATTCATATCGGCCC 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033 3 1 3 86 11 31147286 31147304 CATGTGGTCTGTGAATGGC 59 31144991 31147237 TTTAACTTTCCAGCCTTGGC 59 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000060819 3 1 3 100 20 5118084 5118298 GTCTCCCAGACACTTCCTC 59 5118360 5118380 TGAAGAAGGAAAGAAGTGGTG 58 NA InUTR Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000066637 2 1 2 80 10 87245665 87245824 AAGAACCATGAGGAGAATGC 58 87245604 87245622 CATGGCGGTTAGATCTAGG 57 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677 1 1 2 80 10 87245857 87245877 CCGACTTAGAAATACAACGTG 57 87245675 87245815 GAACTCCCATTTCCTCCTC 57 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 3 2 3 125 2 208131872 208131890 ATGAAGCTCTGGAGCTGAC 60 208132308 208134870 CAATAAACTCGTGGTTAGTGGTC 60 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 2 3 3 112 4 149972333 149972352 TACAGAAGGCATCTGTGGTG 60 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 1 4 4 80 10 65307777 65307795 ACCAAGATTGCTGACTCCA 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014118 2 1 4 80 10 65316644 65316665 TTCTGACTACAAGCAGTATGTG 58 65312360 65316603 TCCAGAGACAGTCTCTGAG 57 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 2 2 3 80 10 87345630 87345648 CAAGTCACGGAACTGAGAC 58 87344754 87345587 CTCCAGAGACTCTTTCATGC 58 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349 2 1 3 97 8 77295641 77295975 ATGACTCTCAGGTGGATGG 59 77295562 77295580 CACTAATCCCACGTTCACG 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000037708 2 1 2 111 7 15072934 15072952 ACACCTTGAGGAACCTGTG 60 15071205 15071226 CAGAGTTTCTCCAACAACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000055829 2 1 2 81 1 134832432 134833703 CTGGGAAAGAAAGGAGTTGAC 59 134832371 134832390 CTCCATTAGCTTCAACAGCA 58 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445 1 1 2 87 10 90308311 90308335 GGAACTGGAACATGTAATAGAACAG 60 90307292 90308266 TGTGGGAAGAGCTTCTGAC 59 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199 3 1 2 88 1 178955229 179009901 ATCCAGTTCATCCAGTCCT 58 178955159 178955177 GCTCGATCATCGATCACAC 59 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390 1 1 2 80 X 156926067 156926085 CTCAGGTAGATTCCGAGGC 59 156926222 156926627 TCTCTTCATTGTCACTCTCCA 59 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799 2 1 2 89 14 81667699 81667717 GAAATCGTGGACCTCACCT 59 81661785 81667648 TTTCTCACCAATGCTTACCAC 59 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000085987 2 1 2 87 20 44592849 44599153 TTACTCAGGTACCTGGAATGG 59 44599202 44599220 TTCCTCCAGGAAGGATTCC 58 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000048140 1 1 2 80 10 89681941 89683340 CTGTACAATCGTGGAGAAGG 58 89683383 89683401 ATAGTTGGTCCAGCAATCC 57 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000051097,ENSRNOT00000067189 3 2 6 80 5 150125521 150125540 GTGAAGGTTGAAGAGAAGCG 59 150116061 150125481 CTTGTCTAAATCCTTCCAAGCT 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493 1 1 6 80 5 150163348 150165456 CTTCAATTATGACCTGGTACCT 58 150162868 150162887 CTTCTCCTTCCTTCGTTTCC 58 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 2 2 3 81 14 72335550 72335568 TTCTCAGCCTTTGGATCCC 59 72333612 72335507 GATCATAGCAAGTTCCACAGC 60 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418 2 1 2 85 1 43831921 43883705 GGACTAGAGGGTTGGATGAC 59 43831855 43831874 GATCTTTAGCAACTGCTCCC 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 2 3 3 80 3 134293428 134293448 TTATCTAGCCGAGATGTACGC 60 134292328 134293390 CAGACTCCTTTATAAAGCTCCAC 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000092063 2 1 2 80 1 251253691 251255249 AAATTAGGCAGTTCCGACCA 60 251253630 251253648 ATCAGTGTCCAGTCCATCC 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000066114 3 1 2 96 3 119699286 119718059 AGTTGCAGAGCTGGATACAG 60 119718118 119718136 AACCTCAGAACCACTGACG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 1 4 10 80 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118026 87118044 CCTCAGGAGTAGATGTGCC 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000051687 3 1 2 119 4 70968323 70968341 GCTACTCTCCCATGATGGG 59 70965712 70968240 AGAATCTGACGAGCCACAG 60 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843 3 1 2 92 9 43021400 43021418 AACAAGCAGTTCTTCGCTG 59 43018017 43021347 GGAAACATGGTTTGCATATCTG 58 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 1 2 2 80 2 87004041 87004059 ACATTCCTGGAGCAAGGAC 60 87004101 87009833 ATTGAGAGCTATTCCTGGGTG 60 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 1 2 2 81 11 31810429 31812689 CAAGCCGGACTTGAAAGAG 59 31812734 31812752 TTTGGTGGGAACTTCATCG 58 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 2 2 2 80 8 29714512 29853598 CATAGTGCAAGTTCCTCCC 58 29853642 29853660 CATAACAGGGTCACACTGC 59 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 3 1 2 80 10 13808315 13808338 TCCAACCTGACATATCTGCC 60 13809295 13809316 TTATCCTGTAGTCACAGGTGAG 59 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 1 2 2 80 7 91863646 91863664 TATCTCTTCCGTCTTGGCT 58 91863707 91865641 TTTGGAACACCTTCCATGAG 58 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177 3 1 2 81 X 20435163 20435707 CAGACAGGAGTGGAAACAG 58 20435752 20435770 TATCAGCTGAGAACTCCCG 59 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000040162 2 1 2 80 8 55458329 55458348 TATGTTCCAGTGGAATGACG 58 55454425 55458289 GTTGTACTTGGTTTATCGTCAG 58 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 3 3 3 80 14 6492209 6492228 CTAGATACAGGCTTCCTGCC 60 6491449 6492168 GTGTAGCAAAGCCCTAAATCC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 2 3 5 81 X 159169771 159169790 GTATTACTGCGTGGATTGCT 59 159169833 159171039 TTTACCAAACCCAGTGATGG 58 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000091885 1 1 3 80 7 61179486 61179505 CAGAGCAAAGAGAAGATGCT 58 61179546 61179568 AGAATGAGATCGAGTTCTTGG 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 1 2 4 166 1 201226088 201238800 ATCTGACAGTCCAGAGCAC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000071516 2 1 2 80 X 159198648 159198758 TGTACACCTGATGGTTCTGTC 60 159198588 159198609 CTGACGTTTCTGTTCTTCTCTG 59 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208 1 1 2 80 16 9606618 9606637 GAGTTGGCGAAACAAGTGAG 60 9606679 9607687 CACTTCATCCAGAAACCTGC 59 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208 2 1 2 80 16 9606619 9606637 AGTTGGCGAAACAAGTGAG 59 9606680 9607688 GCACTTCATCCAGAAACCTG 59 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000082469 3 1 2 80 13 90576951 90576972 TGTTTGATAGTCACATGCTGTG 59 90577010 90591710 TGTTTGTCATAACAGAGATCCG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940 1 2 5 80 7 80775935 80777744 GACGTCTCCAGATCACCAC 60 80777788 80777806 AAGATTCTGGCTCCAGGTC 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940 3 2 5 81 7 80775935 80777744 GACGTCTCCAGATCACCAC 60 80777788 80777807 AAAGATTCTGGCTCCAGGTC 60 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 2 2 2 80 8 82331820 82331840 CACATAGAAGACGAAGTGGAC 59 82330355 82331778 ATCGTGGTACCTTTCCCAG 59 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000081472 3 1 2 80 2 27943423 27943448 AGCTACCTTTGCCTATACTCG 60 27943363 27943381 TCCCTTTGGTGATCACACC 60 NA Rattus norvegicus 81 Sema3b ENSRNOG00000016512 ENSRNOT00000066296 3 1 1 80 8 116358932 116358950 CCATCTTTCGAAGCTTGGG 59 116357654 116358889 CAAACTTGGGTTCATTGAGC 58 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 1 2 2 80 19 24853412 24853430 ATGTATGATGTTCAGCGCC 58 24853473 24853868 AACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 2 3 3 84 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552034 89557058 TATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 2 3 3 84 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552034 89557058 TATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000086116 3 1 2 160 7 60737957 60742345 AAGAGACTCTGGTTAGACCA 57 60734901 60734919 GCAATACACAATGTGCTGC 58 NA Rattus norvegicus 81 Olr4 ENSRNOG00000047512 ENSRNOT00000072272 3 1 1 86 1 70454618 70454636 AACTTGCATGACGCAACTC 60 70465284 70465302 ACATAGCGGTCATAAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Lbp ENSRNOG00000014532 ENSRNOT00000019787 1 1 1 80 3 154805455 154805475 ATGGAGATTGAAGGCTTTGTG 59 154805516 154806766 GAATACATTCGTGACCACGC 60 NA Rattus norvegicus 81 Ccdc19 ENSRNOG00000008492 ENSRNOT00000011450 2 1 1 80 13 90917246 90919342 TCAGAGAACTCATTGTTCCCA 59 90919383 90919402 ATTTGATCCGCTCAAACTCC 59 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310 2 1 2 80 14 73954888 73961109 AACAGTCACAGCGTATTGTC 59 73961152 73961170 TACTCTGAGCAGAGTTGGG 58 NA Rattus norvegicus 81 Nr1h2 ENSRNOG00000019812 ENSRNOT00000026862 2 1 1 83 1 100556834 100557296 ACCATCGAGATCATGTTGC 58 100556769 100556788 GTAGGTGAAGTCCTTCAGGA 59 NA Rattus norvegicus 81 Baalc ENSRNOG00000004697 ENSRNOT00000006411 3 1 1 64 7 77820773 77820791 GAAGCAGAATGGCCTTTGG 60 77834816 77834835 CTTCTCTTGCAGACATTCGC 60 NA DesignNoJunction Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000078514 3 1 3 85 1 217617539 217620373 CCAGAAAGACTATGCCAAAGG 59 217613780 217613799 CTTCTTCAAAGGTGGATGCG 60 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000079684 1 1 5 81 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664245 28732702 ACCCACATAACCAGGACAC 59 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000067996 1 1 2 100 8 96514721 96516904 GTAATACACAAGTTGCACCTG 58 96513795 96513815 TTGGACTCTTCTATGATCCAC 57 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 1 2 2 98 3 166985499 166987008 CCTTGAAGGAAAGAGGCCT 59 166985419 166985439 GGTCGATAATGCGTATTTCCA 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115 1 1 3 81 12 46808357 46808462 TTCTCTGCAGATGAAGCAG 58 46808294 46808312 GATTGTTACTCTCCGGGAC 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000083659 2 1 2 87 8 32545799 32545905 CAGGCTTTCTGTAAGCAGG 59 32546689 32546707 TAGGCCGAACCACATAGTC 59 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146 1 1 2 94 7 83386869 83386890 CTCAAATGGAAGGAATGTTAGG 57 83389768 83396202 CTGGGAAACTCAAATCATCAG 57 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919 3 1 2 116 2 116374162 116374583 AATACTCAAACACAGGGTCTC 58 116370566 116370584 GTAGTTCCTTGGTCAAGCT 57 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000039696 2 1 2 124 8 115255795 115255813 GGAAGGAGACAAAGAGCAG 58 115252085 115252659 TTAAAGGAAGGAGCTTTGGT 57 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513,ENSRNOT00000084506 2 2 5 80 13 34502077 34515333 CCGGATTGGATTAGATCGG 58 34515377 34515395 GTACTCAAGACTCGCATGG 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513 2 1 5 80 13 34489089 34489107 CCTCATCCTCAGGTTCCAC 60 34489149 34490899 TGTGTCTGGACTCTAATGACG 60 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061515,ENSRNOT00000061513,ENSRNOT00000084506 2 3 5 80 13 34543054 34554357 GACTATCTCCAAGCATGCTG 59 34554399 34554418 CTGTAACTCCACGCAAAGAG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 3 2 2 80 7 2558712 2558730 CACAGAGAAGTGTGAAGCC 59 2558562 2558668 TCAGAAGGTGCTGCTACTC 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000078703 2 1 3 151 3 159937100 159941150 CATGGGCAATGACACATCC 59 159941265 159941283 TCCTGAAGAATCCCTTGCA 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 2 4 5 82 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175938 89176831 TCGAGGTTCCCTTTCTTCC 59 NA Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 2 2 2 80 1 126986546 126986566 AAGATTGAAATGTGGGACAGC 59 126986607 126986769 AGGACCATCTTCTTCCTGAG 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 1 2 2 88 9 45536282 45538227 GAAGTCATGAAGCCAACTGG 59 45536213 45536231 TTTCTGATGAGCTCCAGCC 60 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 1 2 2 80 14 7628487 7628505 TCTGCCTCTACGTCTACAC 58 7628546 7629169 CAAGGGTAATTCCTATGCTCTG 59 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 2 2 2 85 10 59900971 59900991 CCCTGAGAATTGAAGATCCTG 58 59901038 59903779 GTTGTTGCCTCTGTATCCC 58 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000056170 2 1 2 90 5 150865470 150865488 CTCAGTACCAGACACTGCA 59 150865542 150880364 GTGCTTGAAGCGAAAGGAG 60 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 3 2 2 80 1 255063274 255063292 CCACAAATCGCTATCTGCC 59 255063333 255067146 CTTCTTCATGAGACCCTTTACC 59 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000055038 2 1 3 88 3 176486527 176486545 TTACAAGCAGCAGTCAGAG 58 176487422 176487900 CCTCTTTCACCTTCTCCTG 57 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 3 2 2 80 8 61722496 61722515 GATATGGAGATGTACCCTGC 57 61722555 61725554 TGATGTAATCTGTCTGAGTGTG 58 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169 2 1 2 152 1 80609767 80609905 AACCTTAGATCCAGGGTGC 59 80609290 80609310 GTTTATCCGGTAAGCTCTCCA 60 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000079797 2 1 2 98 8 52168571 52186856 CAGTTCACGATTCTCGAGC 59 52186918 52186936 ATAGCATGGCAAACACCAC 59 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 2 3 3 80 8 26434143 26447683 CTCTTATGGTAGTAGGTGAATCTG 58 26447718 26447740 CTGGAGAATACAAATCTGTGAGG 59 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200 3 1 2 86 5 75144821 75146026 CTGTGAACCACCATCTACG 58 75144751 75144770 CAATCGTAGTCTGTCCAAGG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000066167 3 1 2 80 20 50440056 50440075 AGTTGGTTTGCTAATTCCCA 58 50440114 50444184 TAGAGGGTACATCCTATAGACAG 58 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911 2 1 2 84 9 118428 118959 GCTGTTCCTTCTATATGTTACCC 59 119003 119021 CACTGACTCGACGAATACG 58 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025689 1 1 3 98 2 210725770 210725788 AGATACACCATGGGAGACG 59 210724971 210725276 AATTAAGTAGGGCAGATTGGG 58 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000084311 3 1 2 128 10 89699277 89699486 CTTCTGCAGCCAGAAATCTC 59 89698962 89698981 TGACTGAGATCCTGGAAGAG 58 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 3 2 2 80 14 83922987 83923088 GACCTTCTACTGAAGAACCTG 58 83923128 83923148 TAGGAGCATTCTTGATCACTG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000050819 1 1 2 80 X 23489657 23489675 TCCTAGAGGAAGCTCAGCA 60 23488143 23489615 AAGGACAAGAGTTGTCCTCTG 60 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 1 3 3 91 8 120444315 120444334 GAAAGTCTGGATGAGGAGGA 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 3 2 2 61 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794546 117794565 GAACCACGGTAGTAGTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000065212 3 1 3 91 9 51509555 51509922 CAGATGCTGGATCCAAGAC 58 51509975 51509995 ACACTTGAGTTGTTCTCAACC 59 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515 3 1 3 82 8 96132535 96132553 CAGACATTGCTTGATGCTG 57 96131774 96132489 CTATGTGCAACTAGCCCTG 58 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701 3 1 2 82 2 211466231 211466249 GTGAACCCTGACTTGTCAG 58 211466295 211467930 CAATCATCAACCTTGTGCG 58 NA Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 1 2 2 80 14 89199470 89199490 ATCGACATAAGGAAACTCCTC 57 89197874 89199431 GTTATTGACGATATTGCACACC 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000016273 3 1 2 91 1 6853892 6961862 CCAGATCTGATGAACACAACG 59 6842115 6842133 ATTGATGGGTGGTTTCCCA 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000067486 1 1 2 90 16 50373568 50379264 ATGACAATGGGTACCACTG 57 50373496 50373515 TCGATAACCTCGTAATTGGG 57 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000015432 2 1 2 113 9 61418681 61528873 CTCAAACTCTGCGATCAGC 59 61383654 61418605 TTTCTCAGAATCCAGTGCGT 60 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299 3 1 2 80 8 87245468 87245486 GGCCTCATCTTCATTCCCA 60 87230038 87245425 CATAAACACATTGCCCTCGA 59 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497 3 1 2 93 9 64695898 64754137 ATTCCCAGGGCTTATACCC 59 64777324 64777344 GAACAACTGATCTAACTGCGT 59 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186 3 1 2 82 1 73396101 73396332 GAAGGCTACTCAAAGAGATGC 59 73396039 73396059 TCTTCTGGTGGAGTCTATCTC 58 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924 3 1 2 150 8 56609405 56609423 GAGAACGAGCATGATGAGC 59 56609537 56610457 AACTTAATGCCTGGAGCTG 58 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000087753 2 1 3 80 8 127243010 127243031 ACTACTGTCCTAAGATTCCCTG 59 127243072 127245682 AGGTGAGGTGAACATCAGC 60 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900 2 1 2 80 1 72881417 72881435 CCAAAGGTTGACCAGACTC 58 72881479 72881749 GCTCATCGCTTCTAGAGGA 59 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000073847 3 1 2 135 2 49128471 49128491 CAAGTCGCACAGGATTTGG 60 49128354 49128373 TTTAGTGTGAGGCAGTCCTC 60 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 1 2 2 80 8 132885928 132886965 GACTAAAGACAGCCAATGAAGAG 60 132885870 132885889 CCTTAGTCATTTGCAGCTCC 59 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330 2 1 2 89 16 72065765 72065783 GAGAAAGAAGCGAAGGCAC 59 72067770 72077727 GTTAGTGAAGGGTGCTTCCT 60 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 1 2 2 80 5 159521402 159521421 GTATGCTGTCTGCATCTTCC 59 159521464 159521567 AGAGTCATGCTTTGCTTCC 58 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000064466 1 1 2 80 20 50517874 50517892 CCTGCTTAGGAAGTGAACG 58 50487162 50517832 CGCAGTTGTAGCATCTATCTG 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876 1 2 4 102 2 53157872 53179738 GATTTCCGGTTTCCATGGT 58 53152536 53157807 GCATCTTAATCCTTTGCTGC 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876 3 2 4 103 2 53157873 53179739 AGATTTCCGGTTTCCATGG 58 53152536 53157807 GCATCTTAATCCTTTGCTGC 58 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 2 2 2 83 3 71863419 71864033 GAGGATCCAGTGAATGAGGT 59 71863355 71863376 CACGTTATTTACAGTAGTGCGA 59 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000086242 3 1 2 91 3 80411620 80411639 CCTACCGAACTTCCACTCAG 60 80411689 80412765 GAAGAGCTGCTCTTTCTTATAGC 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 3 3 4 85 3 56886774 56886879 CTCAGAACACAGTCACTATTCC 59 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 3 1 2 86 5 156682353 156682784 ACTTACAGAAGATCCAGAGACG 59 156682288 156682306 CACAGATGAAGTGAAGGCG 59 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 1 2 2 80 16 75146071 75146089 AAGGAGGAAATGGGTCTGG 59 75146133 75147254 GTCCAGGCTCATGGTAAGG 60 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126 3 1 2 80 3 52660197 52660217 CTGCTTTGTACATGCTGTCTC 60 52659851 52660156 GCATGCTGAATAAGGAGTGC 60 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 1 2 3 80 3 80718514 80718533 CACCTCCTCTTCTTCCTCAG 59 80718575 80732039 CCATTGTCCTCAAAGTCCTC 58 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000046115 3 1 2 80 5 162247560 162247579 TACTGTCTCCAGGAACTCTG 58 162247622 162248288 CTTCTTCAGGCAACTGAGC 59 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 3 2 2 82 5 155705920 155705939 TGACAACTATGCAGTCACAG 58 155703124 155705875 CATAATCCTCTTGCCCTGC 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000067435 2 2 3 81 5 100464570 100467812 ACATCCACTGAAGCCTACAC 60 100464508 100464526 GGAAGGATGGGTCTCTTGG 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000085378 1 2 4 88 5 160364632 160364650 ACATCTTCAATGGGACCGG 60 160364702 160370864 ATGGTCTTTCTGCTCACCA 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000085378 2 2 4 90 5 160364631 160364649 AACATCTTCAATGGGACCG 58 160364703 160370865 CATGGTCTTTCTGCTCACC 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000043170 3 1 4 84 16 81897672 81979867 CAGCCTCAGATGAAATCATGC 60 81897608 81897627 TAAGCAAAGCGCTTCTTCAG 59 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 2 2 2 80 16 71253380 71253399 CTTCGGCACAAACAATTTGC 60 71253439 71254569 TTGGCAATGACTTCATCATCTG 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 3 2 2 80 16 79918809 79918828 AGACGATGAATGTATTCCCG 58 79896455 79918766 TTTGTGTAGGAGACAGCTG 57 NA Rattus norvegicus 81 5S_rRNA ENSRNOG00000053530 ENSRNOT00000080112 2 1 1 60 2 45268636 45268654 AGATCCACTCCTCCTTTCC 58 45268678 45268696 CCAACCTTGCTTAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058175 ENSRNOT00000086840 2 1 1 61 2 102009635 102009653 AGAGACTTTGACAGCCCAG 59 102009592 102009612 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052881 ENSRNOT00000080226 2 1 1 68 2 215196618 215196636 TACTGATATGGCTGCTGTG 57 215196568 215196586 TCACAAGTCAGAACACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056961 ENSRNOT00000088344 3 1 1 61 2 76072844 76072864 CTCTCCATAGAATTCTGGGTG 58 76072803 76072823 AGTTGAGTTTCCCATATGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000055674 ENSRNOT00000078526 3 1 1 66 2 185246842 185246863 CTCAATTGTTGTGGACATTGTC 59 185246889 185246908 ATTAGAAAGGTACCAGGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053792 ENSRNOT00000082104 2 1 1 60 2 180808660 180808680 CATTAGTAGGTGGCAGAAAGG 59 180808699 180808720 GTTAACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053792 ENSRNOT00000082104 3 1 1 60 2 180808664 180808682 AGTAGGTGGCAGAAAGGAG 59 180808703 180808724 AGATGTTAACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054911 ENSRNOT00000077732 3 1 1 61 8 25522799 25522817 TTGTCGGTAGGTGGTAGAG 58 25522839 25522860 CATACAGCAGTTCATAGGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007645.1 ENSRNOG00000036436 ENSRNOT00000054548 2 1 1 60 2 21942282 21942304 GGATCTGCTCTTAAGAATCATCC 59 21942324 21942342 TAGCCTTTAATGGCTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007645.1 ENSRNOG00000036436 ENSRNOT00000054548 3 1 1 60 2 21942286 21942309 CTGCTCTTAAGAATCATCCTTTCC 60 21942328 21942346 AGCCTAGCCTTTAATGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056014 ENSRNOT00000087465 3 1 1 60 8 116766420 116766440 GATCGATGGAAGAGTATACCG 58 116766460 116766480 ACATGCTCTATACCAGGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054670 ENSRNOT00000078654 2 1 1 61 11 64397268 64397292 CCATCTAGTAAAGATGGGAATACAG 59 64397231 64397249 GCGTGTTATCCTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056215 ENSRNOT00000089069 1 1 1 60 11 44762567 44762588 GTGTCACATGTAAGTCAGAAGG 59 44762605 44762627 GAATGCTGAGAGTAATCATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056215 ENSRNOT00000089069 2 1 1 60 11 44762577 44762596 TAAGTCAGAAGGTGGCAGAG 59 44762616 44762637 CCATAAGTCAGAATGCTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058732 ENSRNOT00000089158 2 1 1 60 16 26782526 26782548 GATACAGAGAAGATTAGCATGGC 59 26782488 26782508 GAACCGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034354 ENSRNOT00000052477 2 1 1 60 11 55071204 55071226 CACACTGGATCTTATCTGATCTC 58 55071245 55071264 ATCTAAGCACTAACCAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055491 ENSRNOT00000088826 1 1 1 60 11 49053542 49053563 TATAGATGGCAGAAAGGCTACG 60 49053503 49053524 ATAATTCAGATGTTCCCAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056185 ENSRNOT00000088818 3 1 1 60 8 68354380 68354399 AATGTTTCCCAATACCCTGG 58 68354422 68354440 GTAAGACATTGCCAGTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055343 ENSRNOT00000088092 1 1 1 60 2 10368280 10368298 GAGAAGATTAGCATGGCCG 59 10368238 10368256 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059815 ENSRNOT00000089037 2 1 1 60 8 79563723 79563741 GTCTTCCTGTGGTTTGCTG 59 79563763 79563783 TTCCAGATGGGATAGTCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059815 ENSRNOT00000089037 3 1 1 60 8 79563722 79563740 TGTCTTCCTGTGGTTTGCT 60 79563763 79563782 TCCAGATGGGATAGTCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034426.1 ENSRNOG00000050789 ENSRNOT00000075335 3 1 1 61 11 71094561 71094581 CAATTAGTGATCAAGGTGGGA 58 71094604 71094622 AAGACTACCAGCCTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060639 ENSRNOT00000090570 2 1 1 62 11 14141015 14141035 CAGAGAAGATTAGCATGACCC 58 14141059 14141077 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000056305 ENSRNOT00000088072 3 1 1 64 8 64311702 64311720 GACAAAGGCAGGTTGACAG 59 64311747 64311766 CTGAACAATGAGTTCTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059823 ENSRNOT00000083243 3 1 1 60 2 110357355 110357377 GAGATTGATTCGTCTTTGGTCAG 60 110357395 110357415 GAAGGGTCTAGAAGGAGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058928 ENSRNOT00000087365 1 1 1 60 16 49365957 49365976 TGAAAGCAATCAGGCTTTGG 60 49365916 49365934 CATCAGCTGAGTCAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056774 ENSRNOT00000086568 3 1 1 60 X 80139417 80139436 GCGCCTGATGACTATAAGGA 60 80139376 80139394 TACCACCAATGGGTCAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026534.1 ENSRNOG00000050993 ENSRNOT00000075497 2 1 1 60 16 81538491 81538509 CACTCTCAGGAACTACCCA 58 81538533 81538551 CTTTGATCTGGGTGACCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059388 ENSRNOT00000079685 1 1 1 60 8 132197050 132197070 GACACTCTGTTGACCATTTCC 59 132197010 132197031 GTTTCTTTCTAATGAGCTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070441.1 ENSRNOG00000051744 ENSRNOT00000085200 2 1 1 60 8 70204457 70204475 TGCTTGTGGGCAATAAGAG 58 70204415 70204436 CTTGCTTCATCTGTAGGAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059239 ENSRNOT00000078695 1 1 1 60 1 144625669 144625689 TAAAGTACCAAAGACACAGCC 58 144625629 144625648 CGGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041881 ENSRNOT00000063634 1 1 1 60 16 27442827 27442848 CACCTTGAATGTACCTGATCTC 59 27442788 27442807 TGCTTAGCTTTAAACCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055540 ENSRNOT00000084161 2 1 1 60 16 49355152 49355172 GCTAAACTTGGAACGATACAG 57 49355192 49355212 ATTTACGTGTCATCCTTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059165 ENSRNOT00000081287 3 1 1 60 17 20063403 20063425 GATACAGAGAAGATTAGCATGGC 59 20063365 20063384 AACACTTCGTGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045233 ENSRNOT00000070500 2 1 1 60 1 32051363 32051385 CACCATCTTGTTTGATCCTAGAG 59 32051325 32051346 TTCCATCCAAATACAAAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061206 ENSRNOT00000082810 2 1 1 60 6 87210131 87210149 ATGTGTCAGTAGGTGGCAG 59 87210089 87210108 TCATTGTCAGAACACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA24 ENSRNOG00000061126 ENSRNOT00000090845 3 1 1 60 X 62641886 62641908 CTGTAGTAGCTTTCTGTTCATCC 59 62641848 62641868 TGTCAGTAGAGGTACCATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000059106 ENSRNOT00000080307 2 1 1 60 6 133770712 133770731 AATGATGACAAGGTTTCGGG 59 133770751 133770772 TCAGACTGCTAGAGATGTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061382 ENSRNOT00000089795 2 1 1 61 9 57996144 57996168 GATATAGAGATGATAAGCATAGCCC 59 57996186 57996205 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD11 ENSRNOG00000053003 ENSRNOT00000080611 2 1 1 60 9 66512671 66512689 ATTTCTGATGCCTTGCCTG 59 66512712 66512731 AGAGGTAGTGACTGAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035148 ENSRNOT00000053271 3 1 1 60 X 32102850 32102872 CACACCTGATTTCATCTGATCTC 59 32102812 32102833 ATCCAAGAACTAAACAAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052033 ENSRNOT00000082748 1 1 1 60 4 54935408 54935428 TGCATATTCCTACGACTTCTC 57 54935368 54935386 CTGCATGGTTTGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054985 ENSRNOT00000080886 3 1 1 60 6 69084451 69084471 CTATTCTTAAAGGCAGTGCAG 57 69084493 69084511 TGAGCCATCTATTGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052123 ENSRNOT00000091066 2 1 1 60 X 40865765 40865785 GATACCATGACCAGGAAAGTG 59 40865725 40865744 CATACCTAGAGTGCAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051855 ENSRNOT00000087658 3 1 1 60 2 28652303 28652321 GGTCATTTCAAAGAGGGCT 58 28652261 28652282 CTTTGGTCACAGAGTTAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054731 ENSRNOT00000089092 2 1 1 60 6 29114594 29114614 CATTAAACTGGGACAGCACAG 60 29114554 29114572 TCATGAAGTTGCGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018218.1 ENSRNOG00000060554 ENSRNOT00000083932 2 1 1 129 15 47340815 47340833 TTTCTGAGGCTTCAGGTGG 60 47340926 47340946 AGACATCCTGAACCCTTGC 60 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000052396 ENSRNOT00000081731 3 1 1 60 16 61719637 61719655 TCGTACTGTAGCTGTTGGT 58 61719677 61719697 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055075 ENSRNOT00000090489 1 1 1 60 16 6181957 6181975 GTATGCATATGGGAGGCAG 58 6181999 6182017 TTAACCTTTGGTCACAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053065.1 ENSRNOG00000004381 ENSRNOT00000005784 1 1 1 60 3 89745451 89745472 GCAAACCCATATCATCCATACC 59 89745412 89745430 GGCCACATTGAGAATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058336 ENSRNOT00000081371 3 1 1 71 X 31969609 31969627 GTTCAATTGGGCAGAACAC 58 31969661 31969680 TCATCCTTGTACAAAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054526 ENSRNOT00000083424 3 1 1 61 16 25145558 25145576 GAAGATTAGCATGGCCCTG 58 25145599 25145619 CTCTGACAGATTATCTTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055940 ENSRNOT00000086182 3 1 1 60 16 24545285 24545303 ACATGTGTCACTAGGTGGC 60 24545326 24545345 CAGGTCAGAACACTGATGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025476.1 ENSRNOG00000046180 ENSRNOT00000075699 3 1 1 78 16 38805345 38805364 CAGCAATGAATGCTTCAGGA 59 38805286 38805306 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061861 ENSRNOT00000089671 2 1 1 60 2 150256052 150256072 AGTGAAGATTATCAGGCTCCT 58 150256012 150256030 AGACTTCTCCCTGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057004 ENSRNOT00000082260 2 1 1 60 7 88273426 88273444 AGGGTAAAGGAAGTCTCCA 57 88273468 88273486 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009786.2 ENSRNOG00000041563 ENSRNOT00000063316 3 1 1 84 2 112270938 112270959 ACACGAATACTTTCTGGTATGG 58 112270875 112270893 GCATTTCAGACAAACCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040821 ENSRNOT00000062574 1 1 1 60 11 11978364 11978383 CCCTGAATGCAACTGATCTC 59 11978406 11978424 TACTAACCAGGACCGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027518.1 ENSRNOG00000052192 ENSRNOT00000080609 3 1 1 85 17 35125616 35126290 TATTTGAAGGTGCCCTTGGA 59 35125550 35125568 CAGAACCACATGAACAGCA 58 Novel Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 1 1 1 175 12 50212219 50212237 AAAGCAGCAGTGGAAAGAG 58 50212023 50212044 ACTTAGGATTGGCTTTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000050324 ENSRNOT00000070869 3 1 1 60 3 19205487 19205506 ATTATGGCTGCATCTCTAGG 57 19205528 19205547 TTAAACTTGAGCTGGCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000061565 ENSRNOT00000079492 3 1 1 60 2 25747859 25747878 CTGAACTAGTGGACAGAGAC 57 25747901 25747919 CTGGGTTACAGAAGTAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059000 ENSRNOT00000091939 2 1 1 62 X 15590848 15590866 AAATGCAGTGTCCTTGGGA 60 15590891 15590910 AAGGTCCCTTAGGGTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058770 ENSRNOT00000078452 2 1 1 60 2 218295951 218295969 TGACCCTAAAGGTGTTGGA 58 218295993 218296011 CTTTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058759 ENSRNOT00000089679 1 1 1 60 16 13644471 13644492 GTGTTACAGGTATCAGATGTGC 59 13644513 13644531 AGCATGACATAGGCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061092 ENSRNOT00000079271 1 1 1 60 3 163528948 163528968 ACATGAGACAATTCAGAGGAG 58 163528989 163529008 CTAGATGTCCCTGCTATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000057204 ENSRNOT00000088422 3 1 1 60 8 13878039 13878060 AATAGCCAAATCTGAGCATCAG 59 13878000 13878019 AACTATGGAGATCATGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000060616 ENSRNOT00000082649 2 1 1 60 10 40824910 40824930 CCATTTGACTACCACATTTCC 57 40824950 40824970 TCTATCCCATAAGCATAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056743 ENSRNOT00000087879 2 1 1 69 2 207073722 207073743 GCAGCACATATGGTTAAATTCG 59 207073674 207073693 TTTGTGTCATCCTTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057348 ENSRNOT00000089741 3 1 1 61 16 18469851 18469872 CCCAAATTCGAGGATATTTGAC 58 18469893 18469912 TAGATTGCAAATGCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029272.1 ENSRNOG00000047694 ENSRNOT00000074504 2 1 1 61 10 19583215 19583233 CTATGTAGACCAGGCTGGC 60 19583172 19583190 AGTAGTCTGGAAGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031767.1 ENSRNOG00000053112 ENSRNOT00000088278 3 1 1 104 18 33444375 33444398 GTGCAAAGGATCTGTTCTATAAGG 60 33444461 33444480 CTGAGTCGAAGAAGTGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057665 ENSRNOT00000084948 3 1 1 61 6 99820940 99820958 AGAGGAGATTAACGTGGCC 59 99820982 99821001 AAATATGGAAGCCACACGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036723.1 ENSRNOG00000060291 ENSRNOT00000029285 2 1 1 60 X 881485 881503 CGGCTCTCAGATTGTTGAC 59 881443 881462 CACAGTGATGTCAGATGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056068 ENSRNOT00000088830 1 1 1 60 6 133823319 133823337 CGATGATGAGATCTGGTGG 58 133823359 133823379 AGATGTCTGGATACTTAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001035.1 ENSRNOG00000057721 ENSRNOT00000087018 1 1 1 60 1 35027347 35027365 CCCTGTTGGCATTCTAGTG 58 35027304 35027322 CCTCTGACACAACACATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053500.2 ENSRNOG00000060434 ENSRNOT00000079959 2 1 1 97 3 110508429 110572545 ACACTGTTCTCTGGGACAC 59 110572606 110572624 GTCCTGGAGGGTGATTTCC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044438 ENSRNOT00000069705 1 1 1 60 12 52217417 52217436 GCCTGGTCTTATCTGATCTC 57 52217376 52217395 CCCATAGAATCTCCCATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060113 ENSRNOT00000084556 1 1 1 60 2 96279643 96279662 GGTTGATTCGACTGATCTGG 59 96279685 96279703 CATGGAGTGGTGATGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069736.1 ENSRNOG00000056194 ENSRNOT00000088001 3 1 1 81 8 38548333 38549174 CTCCCTTCAAGCTTTGCAG 59 38548270 38548291 CTGGCATATAAGTCTTCCAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055244 ENSRNOT00000077247 3 1 1 60 3 118986631 118986649 GCGGAGAAGATTAGCATGG 59 118986671 118986691 ATCTAGTGTCTGTCAGGTACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053568 ENSRNOT00000089129 3 1 1 60 4 120350170 120350190 AGGATGTCTTTGTCTGATAGC 58 120350210 120350230 GCTTCTCATAGATCCTTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060285 ENSRNOT00000080458 3 1 1 60 17 31942720 31942738 CAGTGCTGTTTCACATGTG 58 31942678 31942699 CTGGGTAGACATAGTGTATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043407.1 ENSRNOG00000060719 ENSRNOT00000090797 3 1 1 82 19 28142705 28147983 ATCCATGAAGAACAGGCCA 59 28142641 28142659 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 AABR07043247.1 ENSRNOG00000053972 ENSRNOT00000085796 1 1 1 80 19 26761157 26763068 GCTCAACAACGTAATGAAGTC 58 26763108 26763128 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 U6atac ENSRNOG00000059737 ENSRNOT00000081467 1 1 1 76 9 75357766 75357790 GTTCCTCTTAACAAGTATGAAAGGG 60 75357714 75357734 CATGAAGACAAAGGCAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056274 ENSRNOT00000081458 1 1 1 60 4 132947855 132947875 CTGCTATGTCATGTATGCGTC 59 132947815 132947834 CTGAGCATAAACCTAGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD96 ENSRNOG00000060502 ENSRNOT00000088337 3 1 1 60 10 34151397 34151417 TCCTAGTGATGACAAGGAGAC 59 34151439 34151457 AGGACATGTCCTCATTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD10 ENSRNOG00000055390 ENSRNOT00000079842 2 1 1 61 10 56273281 56273299 CTGTTAACCTTAGCCCAGG 58 56273238 56273256 TTCCCTGATAGGTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008420.2 ENSRNOG00000058320 ENSRNOT00000079900 3 1 1 87 2 57677797 57677816 CTTCTGTTTACCTTCCCGGT 60 57677865 57677885 TGAAGGCTACTGGGAAAGAG 59 Novel Rattus norvegicus 81 AABR07035428.1 ENSRNOG00000056768 ENSRNOT00000087860 2 1 1 86 12 14166736 14166754 TTCCAAGACCCACAGTTCC 60 14166261 14166686 ATGAAGTGGCGTCAGTCTC 60 Novel Rattus norvegicus 81 AABR07058233.1 ENSRNOG00000061389 ENSRNOT00000088254 3 1 1 80 7 105814717 105814740 AGATTTCACCTCACATGCGA 60 105814781 105814801 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07058423.2 ENSRNOG00000059053 ENSRNOT00000090876 3 1 1 82 7 116003779 116003799 TCTTCCCTCTCACAGAAAGG 59 116003716 116003736 TGTTGGAAGATTTCCTGAGGA 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000052561 ENSRNOT00000086055 2 1 1 60 10 86430175 86430193 TACGTCCTCTATCCGAGGA 59 86430133 86430154 CCTATTCCAACTCCTAGTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000057429 ENSRNOT00000085406 2 1 1 60 3 174961059 174961080 CCTGATCTCATCTGATCTTGGA 59 174961020 174961039 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139873.2 ENSRNOG00000053098 ENSRNOT00000078792 3 1 1 80 3 73743767 73743789 TCATCTATCTGATCACTGTGGG 59 73743708 73743729 AGTACATGGGTGTTTGTAACCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059561 ENSRNOT00000091243 1 1 1 60 8 82404944 82404965 AATGCTACAGAGATTAGCATGG 58 82404905 82404924 TGGAAACTTCACAACTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053707 ENSRNOT00000081811 2 1 1 60 2 84254021 84254042 GAGAGGCTATGTCTACACTCTG 60 84253982 84254003 TGTTAGGGCACTAATCATTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038786.1 ENSRNOG00000052270 ENSRNOT00000078053 1 1 1 61 X 60715570 60715588 AGTCATCAATCCGGTTCCA 59 60715348 60715368 CTCTTGGTCTTCTTTGTTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA52 ENSRNOG00000058867 ENSRNOT00000081794 2 1 1 60 17 85330151 85330170 AATGGTCAGTCCGTGATCTG 60 85330193 85330211 GCAGGGTTTCTAGGATGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053752 ENSRNOT00000082957 3 1 1 60 17 90799716 90799735 TTCGGTCAAGGGTATACGAG 59 90799675 90799693 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909412 ENSRNOG00000042543 ENSRNOT00000076906 3 1 1 81 5 77432994 77433015 AGTGCAGGGAACTATATTTGGT 60 77432246 77432956 AATGTATTCCCTCCGTCATACTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000060220 ENSRNOT00000082761 1 1 1 60 10 40173178 40173196 GGAGATACCATGACCAGGA 58 40173218 40173238 ACATGAAGAACAACGGATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012312.1 ENSRNOG00000058195 ENSRNOT00000072379 2 1 1 272 2 192941454 192941472 TGTGTCTTCCTGCTGTAGC 60 192941199 192941217 TCAACAGCAGTCTCCAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054492 ENSRNOT00000085592 3 1 1 60 1 94762560 94762581 ATACAGAGAAGATTAGCTTGGC 58 94762601 94762620 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052353 ENSRNOT00000080514 3 1 1 61 3 113392036 113392056 GATACAGAGAAGATCAGCACG 58 113391995 113392015 GGAACATTGCACAGATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056165 ENSRNOT00000089183 2 1 1 60 2 210199287 210199305 CCCAAAGTCAGGTGTTCAG 58 210199245 210199264 GAACACAGGAGGATTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056202 ENSRNOT00000085687 2 1 1 82 10 83735590 83735608 ACTGTCTACATGCTGGCTC 60 83735653 83735672 GAACCTGGTCCCTCATTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035289.1 ENSRNOG00000045540 ENSRNOT00000074232 3 1 1 60 12 9730700 9730719 CTTGAACTCAGAGATGCACC 59 9730742 9730760 GGCATAGGCCTTTAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057946.1 ENSRNOG00000058406 ENSRNOT00000067707 1 1 1 60 7 95019991 95020009 GGTGACCCAAGAATACACC 58 95020033 95020051 CTTCTTGAAGCCCACTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066624.1 ENSRNOG00000045990 ENSRNOT00000072423 3 1 1 91 9 12001560 12001578 CGTCAGAGGCTAAGGAGAG 59 12001483 12001506 TCTAGGTCACTTGCAGACTC 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 1 2 2 80 7 116558121 116559929 CAGAAGTTGTTGTGAGCTCTG 60 116558061 116558080 CAGTTTGAGAACTCGTTGGG 59 Novel Rattus norvegicus 81 AC106510.1 ENSRNOG00000036434 ENSRNOT00000054546 1 1 1 60 2 44897531 44897550 GGTTAAGTAAGCAGCCACAG 59 44897571 44897591 CATTAACAAGAAGACCCGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054362.1 ENSRNOG00000050899 ENSRNOT00000043950 3 1 1 82 3 149960935 149960957 CACCTACAGAAGGAGTGCT 59 149960871 149960889 TAAACTGGAACTCCGTTGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052820 ENSRNOT00000082690 3 1 1 60 14 3385331 3385349 CCTCCAAACAAGCTCTCAG 58 3385373 3385391 CTTTGCGTCACCCAAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6 ENSRNOG00000010822 ENSRNOT00000076086 2 1 1 80 4 32375114 32377014 CAAACACAGGTGAAGATATGGT 59 32377054 32377073 CTCATGTGGGTTACTACCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055989 ENSRNOT00000083142 2 1 1 66 10 58429084 58429102 GTGTCAGTAGGTGGCAGAG 60 58429036 58429060 CAGATGTTTGTAGGTCAGAATAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054350 ENSRNOT00000088882 2 1 1 60 2 166806866 166806886 CACATGTACATCTGTAGGTGG 58 166806826 166806846 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112348.1 ENSRNOG00000011974 ENSRNOT00000015914 3 1 1 84 8 42389547 42389568 CTGGTTTGGATTGTCCAGAG 59 42389482 42389500 CCAATGTTTCCCACCACTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054023 ENSRNOT00000088608 3 1 1 61 1 253580254 253580272 CCATAGAGGCATTGCTGGA 60 253580291 253580315 TCTCCTCTACCATGTATTGATACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055988 ENSRNOT00000082502 1 1 1 60 3 158727407 158727428 GTGTCACATGAGCATAAGTAGG 59 158727447 158727467 GAACACAGAGTGTAGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305207 ENSRNOG00000008242 ENSRNOT00000010881 3 1 1 81 7 143099699 143099718 ACTCTGAACAGACTCAACCA 59 143099762 143101305 TCTGTAGCTCACATGGCTG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050622 ENSRNOT00000071073 1 1 1 60 17 53714714 53714734 CTGAACACATCCCATCTTGTC 59 53714754 53714774 AGTAATAACCAGGCTTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043249.1 ENSRNOG00000057493 ENSRNOT00000074744 1 1 1 80 19 26787996 26789905 GCTCAACAACGTAATGAAGTC 58 26789945 26789965 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 AABR07017045.1 ENSRNOG00000060802 ENSRNOT00000082997 1 1 1 112 15 7400273 7400291 AGGAGAGGGAGAGGAAGAG 59 7399694 7399713 AGACGGGAAACATAACTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017045.1 ENSRNOG00000060802 ENSRNOT00000082997 3 1 1 114 15 7400273 7400291 AGGAGAGGGAGAGGAAGAG 59 7399692 7399713 CTAGACGGGAAACATAACTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000058199 ENSRNOT00000089692 3 1 1 66 17 73715998 73716016 AATGAGGTTTATCCGAGGC 57 73715950 73715971 CACAATGTTTACATGTATCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060891 ENSRNOT00000090304 1 1 1 60 14 23597243 23597264 GTGTTAACCCTTATGATTTCCC 57 23597204 23597225 ACGAATTACACAGTCAGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052633 ENSRNOT00000078182 3 1 1 60 17 56593498 56593518 ATCTGTCACCCTATGATCACC 59 56593458 56593476 GGACACCTGTCTAGACTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053461 ENSRNOT00000091604 3 1 1 60 12 44052235 44052254 ATGTAGTAACGTTGGTGCGA 60 44052277 44052295 GCACATCATCCTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 2 1 1 61 X 100207596 100207614 TACTACCACCAATGCCAGC 60 100206262 100206850 TCTCGACAATCTTTCCTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050561.1 ENSRNOG00000057128 ENSRNOT00000087911 1 1 1 85 5 169898461 169899609 GGCATACCATACTCCGACTC 60 169899659 169899677 CTCCAGCTGGAAGTCAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059774 ENSRNOT00000092077 2 1 1 60 12 6348687 6348705 ATCATTTGCAAAGCTGCAC 58 6348645 6348663 TGGACCATAGACGAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054450 ENSRNOT00000077558 3 1 1 60 2 93811828 93811848 ACGATACAGAGAAGACTAGCA 58 93811870 93811888 ACGCTTCATGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015531.1 ENSRNOG00000049999 ENSRNOT00000072797 1 1 1 62 14 62157855 62157873 AAAGGTTGTCCTCCAGGTC 59 62157899 62157917 AGGTCACCAAGCAGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053823 ENSRNOT00000078198 3 1 1 61 2 244937717 244937735 AGAGAAGATTAGCATGGCC 57 244937760 244937778 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD15 ENSRNOG00000055569 ENSRNOT00000079066 3 1 1 61 1 164436645 164436663 TTCTGTGGTGCTGTAAGTG 58 164436602 164436625 CCTCTAAATCAATCAGTATGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000057523 ENSRNOT00000083532 3 1 1 61 1 116714859 116714879 CAACAGAAAGACAAGAACAGG 58 116714818 116714839 CCTCAGCATAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061002 ENSRNOT00000082742 1 1 1 60 12 15115794 15115812 ACATGTGCTGATACAGGAC 57 15115836 15115854 ATCTCATCCTTGCGAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048653.1 ENSRNOG00000047928 ENSRNOT00000073640 2 1 1 61 5 86870129 86870147 AGACTCGTTGTACAGGGAC 59 86870086 86870104 AGTCCGTCGGAGAATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034366 ENSRNOT00000052489 3 1 1 60 14 59470603 59470624 GATCTCATCTGTTCTCAGAAGC 59 59470642 59470663 ATTCTCCATCCAAGTACTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059573 ENSRNOT00000088271 3 1 1 60 2 173210277 173210296 CCCTATAGGCTATGCAAGTG 58 173210316 173210337 TTTCTTCTGTACCTACTGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054283 ENSRNOT00000088451 2 1 1 60 2 259794526 259794546 TGGTTTGGCTGATTTAGATGG 59 259794565 259794586 GTTTATAGAATGCTGAGGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034111.1 ENSRNOG00000060133 ENSRNOT00000086671 1 1 1 131 11 53503596 53503614 ACACAACCACAACAAAGCA 59 53503477 53503495 TTTGCTGTGCATTCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Sap25 ENSRNOG00000051023 ENSRNOT00000084480 3 1 1 80 12 22126724 22126744 GAGACAGAAAGAAAGCAGCTG 60 22126582 22126682 GGGAGAAAGAGGTACTGGG 59 Novel Rattus norvegicus 81 Rn60_X_0711.1 ENSRNOG00000051321 ENSRNOT00000076524 3 1 1 60 X 70222143 70222162 TACTCAGCAGTAGAAGGAGG 58 70222185 70222203 GGGTGTTTGAAAGAGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052722 ENSRNOT00000079082 3 1 1 62 1 116723489 116723510 ACAACAGAAAGTCTAGAACAGG 58 116723448 116723469 GATAAGCATGGATCAATTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039778.1 ENSRNOG00000048235 ENSRNOT00000075468 3 1 1 80 X 84694288 84694311 AGATTTCACCTCACATGCGA 60 84694352 84694372 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07006255.1 ENSRNOG00000036633 ENSRNOT00000054815 1 1 1 118 1 226038641 226038660 TGAACTTTGTCCACATGGAC 59 226038742 226038760 CACCTTCCCAATGAGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC118841.1 ENSRNOG00000033177 ENSRNOT00000043184 1 1 1 100 5 70463452 70463471 GAGCCTGAAGAATTTGTGGT 59 70463211 70463389 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 AC115341.1 ENSRNOG00000022490 ENSRNOT00000033253 2 1 1 60 3 9096293 9096311 CAAGCCAGACATTGATGCC 60 9096251 9096272 ATCATAGCCAACAAGTGTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056287 ENSRNOT00000080374 3 1 1 60 14 36664778 36664798 AGAAGGGTAAAGGAAGTCTCC 59 36664738 36664756 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054570 ENSRNOT00000085209 1 1 1 60 14 84570599 84570617 AAACTTGCTCACAACCTCC 58 84570638 84570659 TCGATACTGGGCTTATAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059985 ENSRNOT00000082162 3 1 1 60 17 82465988 82466008 ACATGTGCATTATTAGGTGGC 59 82465948 82465969 GGTCATAACACAGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061190 ENSRNOT00000088325 2 1 1 65 2 202894245 202894263 TCAGGTGGAAGAAGGAGAG 58 202894198 202894216 ATCATTCGCGTGTTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065150.1 ENSRNOG00000043690 ENSRNOT00000068957 1 1 1 60 6 111692485 111692503 ATGGGCTTTGAGGTTTCAG 58 111692443 111692462 CAGAAGGAAGAGACTGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057368 ENSRNOT00000078742 1 1 1 60 2 155475185 155475204 TGGTGACAGAGATGACAGAG 59 155475144 155475163 TTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052712 ENSRNOT00000088262 3 1 1 68 1 27540921 27540939 GAAGTATTGCTGGTGTGGC 59 27540871 27540889 ACATAGCTTCCCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072203.1 ENSRNOG00000054282 ENSRNOT00000078363 2 1 1 99 10 104739577 104739598 GGAGTTCCTTAACTTCAAATCG 58 104739169 104739518 TCTTCATTGTTCCTCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052895.2 ENSRNOG00000053165 ENSRNOT00000082492 3 1 1 100 3 82374442 82374461 GGAACCATAGCATTCTGACC 59 82374527 82374545 ATCACTGCTGCTAGAGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048698.1 ENSRNOG00000061625 ENSRNOT00000072346 3 1 1 80 5 88657212 88657235 AGATTTCACCTCACATGCGA 60 88657151 88657171 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000089351 2 1 2 82 13 78991942 78996047 GTCTACACCACGTCAAGTG 58 78996090 78996111 CTGTAGAAGGTACATCCATGAC 58 Novel Rattus norvegicus 81 AABR07028381.1 ENSRNOG00000055638 ENSRNOT00000080328 3 1 1 81 17 67207919 67207938 CTACAAGTGTCCTGTGAAGC 59 67207985 67208003 CTACCAACTCCTTCATGCG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054621 ENSRNOT00000089046 3 1 1 61 6 70169552 70169573 CACATGTCTTTCAGTATGTGAC 58 70169512 70169535 TAGGTCAGAACACTTAGTACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061029 ENSRNOT00000078858 2 1 1 62 14 18972550 18972572 CAACACAGAGAAGATTAGTCTGG 59 18972592 18972612 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015814.1 ENSRNOG00000043857 ENSRNOT00000069124 2 1 1 75 14 78549354 78549372 CCTTGTTGGAGGAAGTGTG 58 78549411 78549429 GAGAGTGACACTAGGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050417.1 ENSRNOG00000054488 ENSRNOT00000087044 3 1 1 80 5 164319545 164348025 ACTCTACAGGGTTTCTTAACCT 59 164319486 164319508 CTGAGCATAATTGAGACTTTCCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056605 ENSRNOT00000085100 2 1 1 60 1 76129654 76129672 AATCATTCCAGGTGTGGCT 59 76129696 76129714 ATAGCCTCTTTCTGCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055905 ENSRNOT00000079284 2 1 1 60 2 131853933 131853951 AGTTGGTGGCAGAGATGAG 59 131853972 131853993 AGATCTTCATAGCTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000056252 ENSRNOT00000085524 1 1 1 60 1 200427704 200427725 GTGGTGTTCTTATATCAGTCGG 59 200427665 200427685 CAAGTTAGGATGACCAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059822 ENSRNOT00000077295 2 1 1 60 2 74938940 74938959 AGGTCAGTCTCATCCATTGC 60 74938899 74938921 CCTAATATCGAGGAAACTTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052149 ENSRNOT00000081283 1 1 1 60 4 22629843 22629862 GGAGGAGGCTTATTCATTGC 59 22629802 22629823 CCTGCATTTAGAGAAATTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052149 ENSRNOT00000081283 2 1 1 62 4 22629819 22629837 TAGTGCACTGACATCTGCA 59 22629775 22629794 CCTACCACAAATCATACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049768.1 ENSRNOG00000057488 ENSRNOT00000088532 1 1 1 60 5 137125538 137125556 ACACTCATCTGCATTCCCA 59 137125496 137125514 GTCTGTGTCTGTGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060415 ENSRNOT00000082959 3 1 1 60 4 176244884 176244905 GCTATGTCTGTACATGTAGGTG 59 176244926 176244944 CAGAACCCAGGGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015055.1 ENSRNOG00000056747 ENSRNOT00000088111 1 1 1 60 14 46523913 46523931 AGAGGGTGTAAATCTCGCG 60 46523955 46523973 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001516.1 ENSRNOG00000055981 ENSRNOT00000091196 1 1 1 80 1 48685267 48686595 CAGGAATCTGTACCTTAACATACTG 59 48685211 48685230 CAGAGTTTGTTCTGTCTGCG 60 Novel Rattus norvegicus 81 AABR07001516.1 ENSRNOG00000055981 ENSRNOT00000091196 2 1 1 80 1 48685102 48685206 TATTTCTAGGTCCTTCCTCAGC 59 48685043 48685061 AAGGAGCTCTTCCATGAGG 59 Novel Rattus norvegicus 81 AC126292.3 ENSRNOG00000056532 ENSRNOT00000079236 2 1 1 60 5 135628606 135628624 AACATTGTAGAAGCCGCTG 59 135628564 135628583 CATAAGTGTCAAAGACGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.2 ENSRNOG00000060832 ENSRNOT00000082275 1 1 1 61 Y 1625135 1625153 AAGAAGTTAGACCGCAGGG 59 1625178 1625198 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC142187.1 ENSRNOG00000036473 ENSRNOT00000054581 1 1 1 60 5 142721645 142721664 TTGACAGGTCTCAGAGATGG 59 142721687 142721705 CAGGACCAGGACGTTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059228 ENSRNOT00000088862 2 1 1 60 5 118496275 118496293 TGGAACGGTACAGAGACTC 59 118496233 118496251 ATGCTTCATGGATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051673 ENSRNOT00000084695 3 1 1 61 2 224165163 224165184 TGTCTCATGTATGTCAGTAGGT 59 224165123 224165146 CACCAAACATAGACATATCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000056880 ENSRNOT00000086858 2 1 1 60 2 260144031 260144051 TCTGTCAGTAATGCACATAGC 58 260144073 260144091 AGTCGCCTTAGAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052833 ENSRNOT00000080000 1 1 1 60 2 44546571 44546592 AAACTTCTGGTTGTGTTCTGAC 59 44546532 44546553 CGTGGAACAGGTTTATTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052833 ENSRNOT00000080000 2 1 1 60 2 44546573 44546593 GAAACTTCTGGTTGTGTTCTG 58 44546533 44546554 GTGGAACAGGTTTATTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072671.1 ENSRNOG00000060089 ENSRNOT00000083565 3 1 1 60 2 2694641 2694662 GCTTTACATTAAAGCGAGAGCA 60 2694680 2694701 GTGTATTTGAATATGCAGCCCA 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 SNORA67 ENSRNOG00000055643 ENSRNOT00000089117 3 1 1 60 12 6389218 6389237 TGATTCCCTCTCCAAAGGAC 59 6389259 6389278 TTCTTCCAAGTTGCTACGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041451.1 ENSRNOG00000051727 ENSRNOT00000085657 2 1 1 77 X 130618106 130618124 CTCTTTCTCCACATCCTCG 57 130618167 130618185 ATTTCACCTCACACCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057781 ENSRNOT00000078471 2 1 1 60 12 48724365 48724383 CATTTCTGATTGCCAGGGT 58 48724323 48724346 GAAAGAAGGAGGTATTTACCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055865 ENSRNOT00000081814 1 1 1 60 12 37915392 37915413 AACGATACAGAGATTAGCATGG 58 37915353 37915371 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060015 ENSRNOT00000091083 3 1 1 60 1 207372745 207372766 ACATGTGAGTCAGTAGTAGCAG 60 207372706 207372726 AGGTCAGAGCACTGATTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123293.1 ENSRNOG00000060034 ENSRNOT00000078270 1 1 1 60 6 122653455 122653474 AAGCTAGTGAAGTGGGAGTC 59 122653414 122653433 TGTGTCTTGCTTCAACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000090521 1 1 4 80 1 49742754 49844396 ATCACCTGACAGTACAGAGTC 59 49742694 49742715 GGTCAGTTGTCAGTTCAAAGAG 60 Novel Rattus norvegicus 81 AABR07036374.2 ENSRNOG00000057023 ENSRNOT00000084392 1 1 1 60 12 40529588 40529606 CATTGTCATCGCTTCTCGG 59 40529625 40529648 CTTGACGATGTCATCTTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017564.1 ENSRNOG00000053129 ENSRNOT00000091011 3 1 1 80 15 27091188 27091210 GACACCTTTGTTGAGCTCC 59 27091256 27091276 TGCATAGGAAGTCAGAAGACC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052335 ENSRNOT00000084364 1 1 1 60 14 104349655 104349675 AACGAAGTAGAGAAGGTTAGC 58 104349615 104349633 AACGCATCAGGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060445 ENSRNOT00000086699 2 1 1 67 6 75620198 75620216 CTTATCCATTGCACTCCGG 58 75620149 75620167 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045148 ENSRNOT00000070415 3 1 1 60 14 9278933 9278952 CTGATCTCGTAAGCTGAGCA 60 9278892 9278910 ATATGGTGACCTCCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA76 ENSRNOG00000051736 ENSRNOT00000082054 3 1 1 60 14 21268223 21268242 ACTTTGCTGGAGCATAACTG 59 21268182 21268201 AGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056841 ENSRNOT00000081381 2 1 1 60 6 110820553 110820573 ACTAGACTAGTGTCTCCCTCC 60 110820593 110820613 GACTGTGTACCTTCAGGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059991 ENSRNOT00000078217 3 1 1 60 5 2951271 2951290 TAGAAACATTGCAGGTGTGG 59 2951230 2951250 TCTCCTTTCTGCTACCAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004996.1 ENSRNOG00000041603 ENSRNOT00000063356 3 1 1 95 1 173672484 173672503 ACTTCAAGTCCTCTGACCTG 59 173672559 173672579 CGTATGTGCACATGTATACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054177 ENSRNOT00000089700 3 1 1 61 14 5803106 5803127 ATACAGAGAAGATTAGTGTGGC 58 5803066 5803086 CGGAACTCTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000059820 ENSRNOT00000086696 2 1 1 60 1 165632879 165632900 TCATGCTATTTGGCAGAATGAG 59 165632840 165632863 CATAGTAAGTGGTATAGTCCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053080 ENSRNOT00000077464 3 1 1 60 6 5646440 5646464 CTAATTTAGGAAAGTCTACTGCGTG 60 5646482 5646500 GGGTAGAGTGCAAATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012467.1 ENSRNOG00000060494 ENSRNOT00000075272 1 1 1 60 2 195486476 195486498 TGTTGTAAGGTGTCTGTAGTAGG 60 195486438 195486457 CAGGTGTCATGTTATGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061689 ENSRNOT00000080007 3 1 1 68 3 98560469 98560487 GTGTCACTAGATGGCAGAG 57 98560518 98560537 TTCAAATGCTCACAGGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056816 ENSRNOT00000084287 1 1 1 60 2 52529276 52529295 ATGATGCAGACAAGACTAGC 58 52529317 52529336 TTCAAGAATTTGCATGTCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0865.1 ENSRNOG00000051045 ENSRNOT00000075984 2 1 1 87 13 81521219 81521237 TCCTGAAACCTGACACCAG 59 81518467 81521171 AGTGAAAGAGCATCTGTTAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061001 ENSRNOT00000082243 2 1 1 62 3 163059819 163059837 AGAGAAGATTAGCATGGCC 57 163059862 163059881 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017763.2 ENSRNOG00000060389 ENSRNOT00000078887 2 1 1 97 15 30735961 30736172 AGTTTAATTGGGTGAGCAGC 59 30736231 30736250 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AABR07049760.1 ENSRNOG00000044644 ENSRNOT00000069911 3 1 1 63 5 136425933 136425951 TGTGTTAGTGTGGATGGTG 57 136425978 136425996 TTTGTGCTCTGCTTATGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.11 ENSRNOG00000050219 ENSRNOT00000072164 2 1 1 60 1 121175503 121175521 GATCAGTCTGGTTGCTTGC 59 121175461 121175483 GAACTTTGATTATTCCCAGGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060628.1 ENSRNOG00000051748 ENSRNOT00000090943 3 1 1 60 4 87294350 87294369 TGATGATCATGACTCTGTGG 57 87294391 87294410 GTGGCCATTTACAGTATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054380 ENSRNOT00000090551 3 1 1 60 5 65696143 65696163 TATGCAAGGAGGTGAGTTCTC 60 65696103 65696121 TCTTCTGTCTAGCCATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.4 ENSRNOG00000058821 ENSRNOT00000084170 2 1 1 60 4 117767522 117767540 TCTTTCTGCTCCTACTCCT 57 117767480 117767499 GTAGCCACATACTCCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110851.1 ENSRNOG00000061706 ENSRNOT00000078340 1 1 1 71 1 217746803 217746821 GAAACTAAGGAGGGTTGGC 58 217746860 217746878 CAACCCACTATTGAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC110851.1 ENSRNOG00000061706 ENSRNOT00000078340 2 1 1 72 1 217746803 217746821 GAAACTAAGGAGGGTTGGC 58 217746861 217746879 CCAACCCACTATTGAGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 3 1 1 61 20 33493093 33520848 GATCAACCACAAGCTTGAGG 59 33493051 33493071 CCTGAGTCTCAGTCAGTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA38 ENSRNOG00000052763 ENSRNOT00000088796 2 1 1 60 2 95138748 95138769 TATGGTAGATTTGGAAAGCCTG 58 95138789 95138808 GGATGATTGATCCTGAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004961.1 ENSRNOG00000059893 ENSRNOT00000081313 2 1 1 60 1 172861529 172861548 TATGTGATGCCCAAATCCAG 58 172861569 172861589 TGTAGAATACAGACACCACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004961.1 ENSRNOG00000059893 ENSRNOT00000081313 3 1 1 60 1 172861115 172861134 GACCGCTATGTAGCTATCTG 58 172861157 172861175 AAACTGTGGAGGACATCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000058048 ENSRNOT00000082128 2 1 1 60 1 6038639 6038657 TCTTGTTGTCTGCACTAGG 57 6038680 6038699 ACAAAGACAGAAAGGAAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052468 ENSRNOT00000077257 1 1 1 60 1 76751057 76751075 GAGAAGATTAGCATGGCCC 58 76751099 76751117 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058651 ENSRNOT00000091774 1 1 1 60 1 163897022 163897040 GGACAGGGTATATCTGTGC 57 163897062 163897082 CAGGAAATGTTAAGCTTCTCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058651 ENSRNOT00000091774 3 1 1 60 1 163897022 163897041 GGACAGGGTATATCTGTGCC 60 163897061 163897082 CAGGAAATGTTAAGCTTCTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 1 2 4 61 9 88280199 88282536 TTTGATGGACCTCCAGGTC 59 88280156 88280174 CATCTCATACCAGGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC122990.1 ENSRNOG00000033642 ENSRNOT00000041248 2 1 1 62 15 27164518 27164539 TCTAACTTAACCCACTTAGTCC 57 27164476 27164495 GCCAAGAGTATCAAGTGACC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD46 ENSRNOG00000061361 ENSRNOT00000087225 2 1 1 65 5 136022659 136022677 ATCCTTAGGCGTGGTTCTG 60 136022612 136022630 TGACAAGTCCTTGCATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD46 ENSRNOG00000061361 ENSRNOT00000087225 3 1 1 65 5 136022659 136022678 TATCCTTAGGCGTGGTTCTG 59 136022613 136022631 GACAAGTCCTTGCATTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNase_MRP ENSRNOG00000057527 ENSRNOT00000090903 3 1 1 159 5 58994886 58994905 CCTTATCCTTTCGCCTAGGG 60 58994746 58994764 AGAACTGACGGATGACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056170 ENSRNOT00000086983 1 1 1 60 6 108384358 108384376 GAGAAGATTAGCATGGCCC 58 108384316 108384334 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0853.1 ENSRNOG00000051292 ENSRNOT00000076046 2 1 1 80 13 80392526 80392940 GGGAGATTACCGAGGAAGG 59 80392464 80392482 GAGATACACCACGAAGCAG 58 Novel Rattus norvegicus 81 AABR07041725.1 ENSRNOG00000040189 ENSRNOT00000061851 3 1 1 114 X 137818861 137818882 TTGGACCAGAGAAACACCTC 60 137818766 137818790 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055090 ENSRNOT00000080855 1 1 1 60 7 102030534 102030552 ATGCTTACTTTGGCAGCAC 59 102030492 102030511 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060792 ENSRNOT00000089461 3 1 1 60 6 63954039 63954057 GGCTACAGCATTTATTGCC 57 63953997 63954015 CTAGCAAGCCAGATCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054887 ENSRNOT00000079831 3 1 1 60 2 211289747 211289766 ATGAAGGAGGGAAGGTTAGC 59 211289789 211289807 TGTTAGGCTCAAGGGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058076 ENSRNOT00000078545 2 1 1 60 9 29505859 29505880 CATTGCAGATATGACTGCTCAG 60 29505900 29505919 GAACACTGAACACAGACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141526.2 ENSRNOG00000060188 ENSRNOT00000087927 1 1 1 60 1 89007629 89007649 AGTCAGAGGCACAGAATTAGG 60 89007671 89007689 AGGAGGACACAGAACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010609.1 ENSRNOG00000051802 ENSRNOT00000089823 1 1 1 107 2 143405798 143405817 CAAATGGCTGAGAAACACCT 59 143405884 143405910 TTTGATCATTCTCACTGGTGTG 59 Novel Rattus norvegicus 81 AC105577.1 ENSRNOG00000055867 ENSRNOT00000048694 1 1 1 80 17 77085320 77085342 AGATTTCACCTCACATGCG 58 77085385 77085404 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA24 ENSRNOG00000052644 ENSRNOT00000085529 2 1 1 60 1 36350988 36351009 TCTTGTTATTGGCAAAGCTGTC 60 36350949 36350969 TTACTTGCTCAAGTCAGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060176 ENSRNOT00000086304 1 1 1 60 5 78482975 78482994 CAATGAGGTTTATCCGAGGC 59 78483017 78483035 GGTGACCTACACCTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028779.1 ENSRNOG00000016710 ENSRNOT00000022385 2 1 1 60 17 85948040 85948058 TCCTGTCAAAGTGACACCA 59 85947998 85948017 CTCGATTCCTCCTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064697.1 ENSRNOG00000060044 ENSRNOT00000090975 3 1 1 60 6 90955226 90955246 GGTCTGTGATGTGTATTTCCA 58 90955186 90955205 AGACATGGGTCTCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009919.1 ENSRNOG00000049341 ENSRNOT00000071473 3 1 1 63 2 116993011 116993029 ACTTTGTAGACCAGGCTGG 59 116993056 116993074 CAGCTCTTCAGAGGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691843 ENSRNOG00000058174 ENSRNOT00000090742 2 1 1 60 3 77365119 77365140 CCACTCATCTTTACCTATGTCC 58 77365080 77365100 GAGCAAATACCTTGTCATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032385.1 ENSRNOG00000057933 ENSRNOT00000091026 3 1 1 60 18 63664834 63664852 GAGGAACATGAGCTTTGCC 59 63664792 63664811 TTGACCTGCATCTTCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061214 ENSRNOT00000088452 1 1 1 60 5 150492170 150492188 AGAGACTTTGACAGCCAGG 59 150492211 150492230 ATATAGGGAGAGCTGAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 1 1 1 107 9 95346275 95346293 ATCATTTGCACAACCACCC 59 95346362 95346431 CTTTGTTGATTTCCCAGAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057528 ENSRNOT00000090734 3 1 1 60 1 210082732 210082752 ACCATGATAGTGACCTTCCAG 59 210082773 210082792 CAGTTCACCACTCCTTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060073 ENSRNOT00000078984 3 1 1 81 14 92640102 92640120 AGATACCATGATCGAGGCG 59 92640165 92640183 CATTTGGAGAAGCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071959.1 ENSRNOG00000043455 ENSRNOT00000067015 1 1 1 80 1 170900229 170900249 TGAGAAGTGGCTTTATCTTGG 58 170900289 170900310 CCAACATGTATGATGTAGCAC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000054997 ENSRNOT00000084153 1 1 1 60 10 21386984 21387002 CTGTCACCCATTGATTGCC 59 21386942 21386960 GACACCTCCTTAGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058116.1 ENSRNOG00000004906 ENSRNOT00000006506 1 1 1 60 7 100701018 100701037 GGCATCATTCACATGGAGAG 59 100701060 100701078 TGTCGGAAATGAGCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028839.1 ENSRNOG00000059656 ENSRNOT00000081311 2 1 1 96 17 88037337 88037356 ATTTCCAAGACTCCTCCCTG 59 88037415 88037435 CCACTTCCAAAGCAGAACG 60 Novel Rattus norvegicus 81 AABR07017783.4 ENSRNOG00000060016 ENSRNOT00000090250 2 1 1 60 15 31051525 31051545 GTGCAATATCTCAATGAAGCC 58 31051567 31051585 TCCTCTTGTTGTCTGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000077061 2 1 2 80 X 73540167 73540185 AGGAAGACTCCAAGACGTC 59 73540229 73543969 ATGAAACTTCAGGTCCGCA 60 Novel Rattus norvegicus 81 AABR07032261.1 ENSRNOG00000024970 ENSRNOT00000033372 1 1 1 60 18 57444718 57444741 TGTTCGATATCATAGCTACTGAGG 60 57444681 57444700 CCGAGGAATTTGGATCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057006 ENSRNOT00000081414 3 1 1 60 13 34536477 34536498 TAAGAACTTCAAGACACTGAGG 58 34536438 34536460 GAGATCTTTCCATCTTCTGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059104 ENSRNOT00000081887 3 1 1 60 1 104456840 104456858 GACTGAGTCAGCTGATCTG 57 104456882 104456900 GCCCATGCAACAATAAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.3 ENSRNOG00000054164 ENSRNOT00000085845 1 1 1 80 X 123822918 123822936 CAAGTTCGAGAACCAGGAC 58 123822388 123822877 ATAAGTGGCTTCACTTTAGCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053176 ENSRNOT00000083101 1 1 1 60 13 94767645 94767663 GGATGTGAAGGCAATCTGG 59 94767603 94767621 ACTGAACCAACCCTGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052715 ENSRNOT00000085532 2 1 1 60 4 96577075 96577093 GAGAGGAGCTCTGTCTGTC 59 96577033 96577054 AGGCTACTAATCATTCAGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057544 ENSRNOT00000082436 3 1 1 60 13 9405617 9405637 ATATGCCTGTCTCTTTGAACC 58 9405659 9405677 GGTTCAGAAGCATGGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019386.1 ENSRNOG00000052579 ENSRNOT00000090448 2 1 1 66 15 103440980 103440998 CATGAACGCCTTCATGGTG 60 103440932 103440951 CATCTTAGGGTTCTCCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060792.1 ENSRNOG00000057220 ENSRNOT00000090783 3 1 1 60 4 93888513 93888531 GACCCAGTCTCCATCTTCC 59 93888554 93888573 CCGGCAAGTAATAGTGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139392.1 ENSRNOG00000043550 ENSRNOT00000068817 2 1 1 63 6 22208107 22208125 TTCTCTGTGTAGCCTTGGC 60 22208062 22208080 TCTAAGTTCAAGGCCAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065445.1 ENSRNOG00000057803 ENSRNOT00000085943 3 1 1 80 6 128985573 128987918 CAAGGAGAAGGCAGAACCT 59 128985511 128985530 ATCCGGTATTTCCCTATGGC 60 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000058161 ENSRNOT00000080708 1 1 1 64 3 31204409 31204427 TTTGTTCAAAGTGTGGGCA 58 31204455 31204473 TGTGGATGGCAAATGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094647.2 ENSRNOG00000056060 ENSRNOT00000084785 1 1 1 86 1 251633933 251633954 ACACTCAGAGACTCAAATACAC 58 251634001 251634019 GTGTATATGCATGCGTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044405.1 ENSRNOG00000055272 ENSRNOT00000087702 1 1 1 60 20 4808227 4808246 GGAAGCTCTTTGACCTTCTC 58 4808186 4808205 CACAGACCCTCGATACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059596 ENSRNOT00000082282 3 1 1 60 7 97676488 97676509 GTGTATCTTTCCAGGTACTGAG 58 97676449 97676469 CCTCCTTTATCAGGAAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057896 ENSRNOT00000084967 1 1 1 60 3 58785387 58785406 GCATGGGTTTGGATTTATGG 58 58785346 58785367 CTAGCATGGGATACTATGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055243 ENSRNOT00000091158 1 1 1 60 3 152392182 152392200 GTTGGTGTTCTCACGTCAG 59 152392140 152392159 CAAGCTAGGATGAGCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053480 ENSRNOT00000083911 2 1 1 60 3 4092863 4092882 AAGTGGCTATTTCTACGCTC 58 4092822 4092842 GGCTACAAACCATTCTTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045399 ENSRNOT00000070666 3 1 1 60 13 101869784 101869802 AGAAGCTAAGCGGGATCAG 59 101869742 101869760 TTGCTGCTGTTATGACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.1 ENSRNOG00000050010 ENSRNOT00000075743 3 1 1 60 13 85672651 85672669 GGGACTCTTGTTACAAGCG 59 85672609 85672627 AAATGCAGAATCTCAGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126292.1 ENSRNOG00000050606 ENSRNOT00000073623 1 1 1 60 5 135610948 135610966 GTTTCTCTGTGTAGCCCTG 58 135610990 135611008 GTTTAAAGCCAGCCTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061076 ENSRNOT00000084975 3 1 1 60 20 19411406 19411425 GATCACCAGGGTTGATTCAG 58 19411446 19411466 GGGAAGAGAAGGAAAGAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071874.1 ENSRNOG00000055529 ENSRNOT00000083436 1 1 1 65 1 63456980 63456998 TAGACATGGGTGAGTTGGC 59 63454701 63454719 CACAGTCTTCACTGCACAC 59 Novel DesignNoJunction Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000059509 ENSRNOT00000083292 1 1 1 60 13 78854991 78855009 ATAGTTCAGCAGACGTGAC 57 78855031 78855051 AGATACATCAGATAGGAGCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021022.2 ENSRNOG00000058197 ENSRNOT00000083282 1 1 1 60 13 53782480 53782501 TGGTCTATCACACTTCATTTGG 59 53782519 53782540 ATGATCCAGACATACTCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060301 ENSRNOT00000090530 3 1 1 61 3 46265955 46265975 CGATACAGAGAAGATTAGCGT 58 46265914 46265932 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136025.2 ENSRNOG00000061055 ENSRNOT00000083834 3 1 1 81 7 59462509 59463392 TGAGCTCTCGAATCAATCGT 59 59463438 59463457 TCGTAGGAGCTGTTTCACTG 60 Novel Rattus norvegicus 81 AABR07052755.2 ENSRNOG00000032597 ENSRNOT00000043221 1 1 1 60 3 73438768 73438787 GTAGGACTGACAGATGACCC 59 73438725 73438746 AGTAGATGACTAGAAACACAGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000057737 ENSRNOT00000077194 3 1 1 68 3 175450337 175450355 GTGGATTTCTAAGGGTGGG 58 175450386 175450405 CAGTTAGTTCCACATCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058922.1 ENSRNOG00000056365 ENSRNOT00000086547 2 1 1 63 7 143323110 143323128 CTCATACTGGGCCTTGACC 60 143323155 143323173 CATGGACAACAACCGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060531 ENSRNOT00000081005 3 1 1 61 19 37117719 37117737 GAGAAGATTAGCATGGCCC 58 37117762 37117780 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018010.1 ENSRNOG00000061809 ENSRNOT00000075218 1 1 1 174 15 36196172 36196191 ACTTGCAGCCTCTAATACCT 59 36196014 36196035 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 U4atac ENSRNOG00000057270 ENSRNOT00000090418 1 1 1 60 13 34437827 34437847 CAATGAACGAATAGTGAGGGC 60 34437787 34437805 TCTAACCGATGCAGGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029863.2 ENSRNOG00000057661 ENSRNOT00000087455 3 1 1 60 10 56590722 56590743 TCCCTCTTCAGAATGAGTTGAG 60 56590761 56590782 GTAGTGACGTGTATTCACTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112001.1 ENSRNOG00000057296 ENSRNOT00000083751 2 1 1 80 2 2038267 2038290 GAGATTTCACCTCACATGCG 59 2038332 2038351 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC126292.2 ENSRNOG00000055526 ENSRNOT00000091664 1 1 1 60 5 135687669 135687692 GGAGAAGAATCTGAAAGTGAAAGG 60 135687709 135687729 AGTGATTCTCAGTGTCTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051737 ENSRNOT00000091111 3 1 1 60 13 93859251 93859269 CTGGAAGATGGGATCGGAG 59 93859291 93859311 CAGAGATGTTGTAACCTCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044850 ENSRNOT00000070117 1 1 1 60 5 28555448 28555469 ATGCTAAGTAGGATGAGACCTG 59 28555409 28555429 ACTATAGCTTCACCTATGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055143 ENSRNOT00000077673 2 1 1 60 13 90650393 90650413 TTGAGTTCAAGAGTTCTGGAC 58 90650434 90650453 TGGACTTAGTGTGAACACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044282 ENSRNOT00000069549 2 1 1 78 6 109955207 109955226 ATTTAGGTCTATGGCCTCGC 60 109955148 109955166 ATCCAAGTACCAACCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056173 ENSRNOT00000077955 2 1 1 60 X 96887833 96887855 CTACAGGTATAGAAGGTGTTTCC 58 96887795 96887816 CTCTTATCTGCCACCTAATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054434 ENSRNOT00000087507 2 1 1 60 19 54528520 54528544 GCTAGACATTCACTATAGTAAGACC 59 54528558 54528580 ACCCAGGTAAAGAACTAGTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058044 ENSRNOT00000087590 1 1 1 60 3 64075783 64075801 GAGAAGATTAGCATGGCCC 58 64075741 64075759 AAATATGGAAGCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041864 ENSRNOT00000063617 3 1 1 62 18 11640216 11640234 ACCCTGAATGCACCTAGTC 59 11640257 11640278 TTTATAACTGGGACCCACTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058713 ENSRNOT00000091074 2 1 1 60 20 13150002 13150024 GGAACAATAAGGAGACGATTAGC 59 13149964 13149983 GCTTCACGAATTTGAGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065485.1 ENSRNOG00000060077 ENSRNOT00000089365 1 1 1 80 6 130670080 130670102 AGATTTCACCTCACATGCG 58 130670018 130670037 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051765 ENSRNOT00000090169 2 1 1 60 15 39046984 39047004 GTCACATGTGTTTGAGTAGGT 58 39046944 39046967 CAGAATACTGAGTTTAGACCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051622 ENSRNOT00000092156 3 1 1 61 15 4027979 4028000 TACAGACTATTAGAAGGTCCCT 57 4027939 4027958 AATATGCAGCACTTGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 1 1 1 73 6 139660496 139660624 AAAGGTGTCCAGTGTGAGG 60 139660441 139660459 AGTTTCAGGGACCTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC096370.3 ENSRNOG00000060994 ENSRNOT00000088065 1 1 1 80 1 259687996 259688457 AGTCCTGAAGGTTCCAAGAG 59 259687402 259687420 CTGGTTTGTGAGGCAAGTG 59 Novel Rattus norvegicus 81 SNORA52 ENSRNOG00000054652 ENSRNOT00000091098 1 1 1 60 18 10489235 10489256 ACTATGGAAATCAATAGGGCAG 58 10489277 10489295 CTCTGGCAAGGTTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD23 ENSRNOG00000059690 ENSRNOT00000080874 1 1 1 62 1 24306081 24306099 CATTCTGAGGGTAGGGCTG 60 24306125 24306143 CAAGCAATGGTCCAACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680227 ENSRNOG00000037911 ENSRNOT00000075940 3 1 1 103 X 74315900 74315918 AGTAGTTTGTGTTGGACGG 58 74315985 74337719 TTCTTCAGCATTACGCTCC 58 Novel InUTR Rattus norvegicus 81 AC112350.1 ENSRNOG00000047508 ENSRNOT00000073542 2 1 1 81 3 114182621 114182639 AAGCTGCCTACACCAAGAG 60 114182556 114182582 GCTGAAGACTTCTTGTACTTATCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060304 ENSRNOT00000081369 3 1 1 60 3 45629330 45629348 CAGAGATTAACATGGCCGC 59 45629372 45629390 AATTGTGGAACGCTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 2 1 1 63 4 90089755 90090484 CATGACGTTCTATGTCAGGA 57 90090507 90090528 AGATTTATCAGCCCAAACTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC095278.1 ENSRNOG00000020749 ENSRNOT00000028152 3 1 1 60 10 89510256 89510275 GACAGTGACCATCTTTGTGG 59 89510296 89510316 CATCTTCTTCCAGATGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055844 ENSRNOT00000077674 2 1 1 60 7 73212517 73212536 TGACAGAATTTGAGCTTGCT 58 73212476 73212498 CATGAGGAAGAGAACACTATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060483 ENSRNOT00000091400 1 1 1 104 X 119210181 119210199 ATCAGGACAGGTACAGCAC 59 119210095 119210113 TACAGGCCTCTAGAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057379 ENSRNOT00000077940 3 1 1 60 X 33333991 33334010 CATCTGTCACCCTATTGACC 58 33334033 33334051 ACAATTGTCTAGCCAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056465 ENSRNOT00000090479 1 1 1 60 X 71346471 71346492 GGTAATTCAGACAATTTGGCAG 58 71346432 71346454 CTAACTGATATAGTCCTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036732.1 ENSRNOG00000057227 ENSRNOT00000090671 1 1 1 81 X 1062006 1062024 GAAGTTGGAGCAAGGAGAG 58 1036509 1061962 AATCCTAAACTTCCCACCTG 57 Novel Rattus norvegicus 81 AABR07041532.1 ENSRNOG00000049651 ENSRNOT00000072582 3 1 1 60 X 132506913 132506936 CTCCTCAGAATTCTCTGAATTCTG 59 132506876 132506896 GGCCCACACTTGAATATTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056920 ENSRNOT00000080312 2 1 1 76 18 75067005 75067023 AGATACCGTGATCACGGAG 59 75067063 75067081 CAAGTTTGGGTCAGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054895.1 ENSRNOG00000061679 ENSRNOT00000081623 2 1 1 80 3 173249476 173249497 GGATCCTTCTCAGAAGAGTCTC 60 173241540 173249437 TCCCAAATGTAGCCTATAGCG 60 Novel Rattus norvegicus 81 AC094421.1 ENSRNOG00000017586 ENSRNOT00000023626 2 1 1 60 10 14533287 14533309 TACGTATCTTACCCACGATTCTC 60 14533249 14533267 GTGTTTCCGACCATTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121471.1 ENSRNOG00000053656 ENSRNOT00000080873 3 1 1 80 4 163647683 163647704 ATTCTTCAGGGTTACAGAACCA 60 163646025 163647642 AGACTGAACACCCTCTGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054101 ENSRNOT00000081044 3 1 1 60 10 76628754 76628774 TGTTCCCTTACTCCTTCACAG 60 76628714 76628732 AGGTTGTCCTCTTTGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098462.2 ENSRNOG00000055843 ENSRNOT00000090337 1 1 1 85 1 63290167 63290188 TCTTGATGAGACTCAGAAGCTC 60 63288222 63290121 TTCTATGCCCACAACCCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054707 ENSRNOT00000084599 3 1 1 74 15 480038 480056 CCTTCAGCAGCACATACAC 59 479982 480001 GTATGTCATCCTTGTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055800 ENSRNOT00000082608 2 1 1 63 10 37418995 37419013 AGAGATGACTAGCACTGCC 59 37419040 37419058 ACAATATGGAGCCCTTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057216 ENSRNOT00000086212 3 1 1 61 15 69669587 69669611 CAGAAGATAGATGATCATGTAGGTG 59 69669627 69669648 CCTGGAATGCAATAAGTAAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060702 ENSRNOT00000080765 3 1 1 64 7 118580801 118580822 TCAGAGAAGGTACTATGATCGT 58 118580758 118580776 TACAGGGATCAGCACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058064 ENSRNOT00000083883 2 1 1 60 6 88546652 88546671 TGTCCCTAGAGGTATTGCAG 59 88546611 88546630 ACCTACTGAGGTGACATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000054099 ENSRNOT00000086077 2 1 1 76 20 45346662 45346680 CATTCCTACAGTGCTTGCC 59 45346604 45346624 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061825.1 ENSRNOG00000059964 ENSRNOT00000078967 2 1 1 80 4 147918485 147918503 AACCAAATGCTCTTGTCGA 58 147918422 147918444 ACATTCAAGATCCCATCTACTG 58 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000061642 ENSRNOT00000092004 1 1 1 60 20 9904345 9904363 AGAGACTTTGACAGCCCAG 59 9904303 9904323 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044990 ENSRNOT00000070257 2 1 1 60 15 57342182 57342202 ATACCACCCTGAACACATCTG 60 57342224 57342242 TAGATATCCATCAGGCCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685321 ENSRNOG00000058976 ENSRNOT00000091891 2 1 1 101 10 14668350 14668553 TCATGGCCTCTGTATCTGTC 59 14668617 14668635 AGATTCTCAGGCTGACCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059777 ENSRNOT00000091886 2 1 1 60 4 51986896 51986916 GATACAGAGAAGATCAGCACG 58 51986856 51986877 GAACGCTTCATGAATTTGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053612 ENSRNOT00000081975 2 1 1 67 20 50371771 50371789 AGTGGCTATGCTTATGGGA 58 50371820 50371838 AAAGACACGGAACAACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062500.1 ENSRNOG00000041515 ENSRNOT00000063268 3 1 1 61 4 180090963 180090984 CATTGGAAGAAGGAAGACTCTC 59 180090923 180090941 CTAGCAGTTGCTCAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060980.1 ENSRNOG00000056052 ENSRNOT00000083239 3 1 1 82 4 102147226 102147245 GTCAGGACATAGTATGGCCA 59 102147289 102147428 TATCACATCTGGCACCTGAG 59 Novel InUTR Rattus norvegicus 81 AABR07056503.1 ENSRNOG00000053843 ENSRNOT00000077976 2 1 1 60 7 27439877 27439896 CCCTTCTTCTGGTCTTTCTG 58 27439917 27439937 AATAGTTCCTGGTGTTGTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060845 ENSRNOT00000080508 1 1 1 60 7 117480370 117480390 CACTAACACTGGAATGATGCC 59 117480330 117480351 TTAAGTGTTCTCATTGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056199 ENSRNOT00000085974 2 1 1 60 5 127567594 127567613 CTTCCTGTGGTTTATTGGCT 58 127567634 127567654 TCTTCCAGATGGGATAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057192 ENSRNOT00000089656 1 1 1 60 18 81672006 81672029 GATTGATGAGTCTGATGAAGTTGG 60 81672048 81672066 AAATGGTGAGGGAGGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA77 ENSRNOG00000052026 ENSRNOT00000084343 1 1 1 61 11 86897951 86897969 AGATTCACTCTGCACCTGG 59 86897994 86898012 TGTTTCTCTGGCAGATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA77 ENSRNOG00000052026 ENSRNOT00000084343 3 1 1 62 11 86897950 86897968 CAGATTCACTCTGCACCTG 58 86897994 86898012 TGTTTCTCTGGCAGATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000057324 ENSRNOT00000080645 1 1 1 60 11 48816377 48816395 TGTTCATGGGCTTTCAGGT 60 48816335 48816353 AAGCTCATGGCATCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051781 ENSRNOT00000084234 3 1 1 61 19 39207210 39207232 GGAAGGAATCAGGAAAGATTAGC 59 39207171 39207192 CTGCTTCATGAATTTCCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060850 ENSRNOT00000084740 3 1 1 61 11 2227653 2227672 CCCTATAGGTGTTGTGGGTG 60 2227611 2227629 CTCCTTCTGCCACCTATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 1 1 1 168 13 54915005 54915027 GTATCATTACTGGAGAGGCAG 58 54915158 54915176 TTTGCACCTACACATTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053926 ENSRNOT00000087288 2 1 1 60 18 8605213 8605232 TATAAGGATTGCAGGTGTGG 57 8605253 8605273 TCTCCTTCTGAGTACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052928 ENSRNOT00000077344 2 1 1 69 11 31688152 31688171 ATTGACCTCTGTGATTTCCC 58 31688102 31688122 AGTGTAATTTCCCACTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034799 ENSRNOT00000052922 2 1 1 60 9 64068873 64068891 CCCGATCTCGTCTGATCTC 59 64068831 64068850 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051685 ENSRNOT00000091779 2 1 1 60 9 84197552 84197574 GATACAGAGAAGATTAGCATGGC 59 84197593 84197612 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034502.1 ENSRNOG00000036328 ENSRNOT00000054450 3 1 1 60 11 74222636 74222654 CATAACCAGCACAGACTGG 58 74222676 74222696 GGCACTCAAAGAGATACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057193 ENSRNOT00000088074 3 1 1 60 18 2103623 2103642 TCTCCTGTCAGAACTTCCAC 59 2103661 2103683 GAAGTCTACAGTATGAAGTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060698 ENSRNOT00000085827 1 1 1 60 3 61415750 61415768 AGGAAGGTGGTTTACCCAG 59 61415708 61415728 GAAGAAGTCAGCACATCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052032 ENSRNOT00000078487 3 1 1 60 18 270873 270896 GGAAGGATACAGAGAAGATTAGCA 60 270915 270933 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035926 ENSRNOT00000054049 2 1 1 60 18 59604065 59604086 TGATCTCGTTGTCTCATCTCAG 60 59604026 59604047 CCCATTCAAGTACTATCTAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061329 ENSRNOT00000086484 2 1 1 60 18 36161915 36161937 CGATACAGAGAAGATTAGCATGG 59 36161957 36161975 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055656 ENSRNOT00000087571 2 1 1 60 6 5216251 5216270 TGTCACATGTACTGATCAGC 58 5216293 5216311 AGAACACTGAGCATAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060493 ENSRNOT00000084863 1 1 1 60 10 105548636 105548659 GATACAGAGAAGATTAGCATGGAC 59 105548677 105548696 GAACGATTCACGAACTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 2 1 1 85 9 110056181 110056205 AGAATAGCTTTGGCTACTCCTC 60 110056117 110056135 CTCCAGCAAAGCCAAATCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010181.1 ENSRNOG00000055473 ENSRNOT00000091500 3 1 1 80 2 128194991 128195013 AACCAGAACTTTAGTCTGGGA 59 128194931 128194953 GTATCAGATACAATGGGTAAGCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061081 ENSRNOT00000086788 3 1 1 60 4 91233161 91233181 CTAGGAGTTGGAATAGGAGCT 59 91233121 91233140 TTTCTGCAATACCAGGTCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056253 ENSRNOT00000091771 1 1 1 69 5 164164228 164164247 GCTCCAGTAGCACATATCCT 59 164164279 164164297 TTATCCTTGTGCAGAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dgke ENSRNOG00000002338 ENSRNOT00000076587 1 1 1 80 10 76402333 76402354 CCTCCAAGTTATTTAACGTCCA 59 76399474 76402294 TCCAAACTTAGAAGCAAGCAC 59 Novel Rattus norvegicus 81 AABR07059046.1 ENSRNOG00000041521 ENSRNOT00000063274 1 1 1 60 4 2561384 2561402 ATTCCTTCATAGCTGGGCA 59 2561342 2561360 CTCTTCCTCCCAATTGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128800.1 ENSRNOG00000047810 ENSRNOT00000071606 2 1 1 63 19 38158756 38158774 CTCCTCTTCCTCCTTCTCC 58 38158799 38158819 CTACAAAGTATGGCAATCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127076.1 ENSRNOG00000052036 ENSRNOT00000078099 2 1 1 93 5 4927456 4927476 TGATGGAGGACTTTAAGAAGG 57 4927359 4927402 TCCTGTAGTTCTTTAAGGGC 57 Novel Rattus norvegicus 81 SCARNA17 ENSRNOG00000061205 ENSRNOT00000081598 2 1 1 60 18 70733439 70733459 CCTTATATGATCAGGCCTCTC 57 70733399 70733418 TCATAATCCTCTCAGGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055363 ENSRNOT00000088847 1 1 1 60 6 47586833 47586851 CCCTAGAGGAGTTACAGGT 57 47586875 47586893 CTCTGCCATCTACAGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044997 ENSRNOT00000070264 2 1 1 60 4 143489655 143489673 CACATGCCCATCTCATCTG 58 143489693 143489715 TCAAAGTGTTACCTAGACCTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA11 ENSRNOG00000054983 ENSRNOT00000081653 2 1 1 60 4 157637074 157637094 CCCAGTCTTAACAGGGTAGTC 60 157637116 157637134 CCCTCCTAAACTGAGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009457.1 ENSRNOG00000046362 ENSRNOT00000071824 2 1 1 80 2 98613892 98613911 GGGCATTATTAGGGACTTGG 58 98613827 98613850 TTTCCAAACCGGATAACCAG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000056812 ENSRNOT00000091526 3 1 1 65 11 10610103 10610121 GTTACCCATTGCACTGTGG 59 10610056 10610074 ATCAAGATTCCTTCCGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064983.1 ENSRNOG00000004582 ENSRNOT00000006043 3 1 1 60 6 103640631 103640650 ACAGCAGATGGAAGAGATGG 60 103640668 103640691 GATGTTCTCTGTATCTGTTTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064102.1 ENSRNOG00000024969 ENSRNOT00000039776 1 1 1 60 6 64649521 64649539 GAGAGTTTGGAGGGAACGA 59 64649563 64649581 TCTTCATCACTGGCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056109 ENSRNOT00000086079 2 1 1 60 11 63981480 63981502 GATACAGAGAAGATTAGCATGGC 59 63981442 63981461 GGAAGCTTCACAAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057408 ENSRNOT00000092015 1 1 1 60 4 99964368 99964390 GGAACGATACAGAGAAGATTAGC 59 99964330 99964348 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027283.1 ENSRNOG00000058495 ENSRNOT00000080977 2 1 1 80 17 22811476 22811495 GAATTGTCTGCATACTGCGT 59 22811411 22811435 AATTGACTTGATGTGGCAGAC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050366 ENSRNOT00000072740 1 1 1 60 7 116076542 116076560 GTCTACAGCGATACCACAC 58 116076500 116076522 CTCTGTTTAGCTTGTGAGATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.2 ENSRNOG00000057667 ENSRNOT00000090254 1 1 1 76 13 82125799 82125817 TCTTTCTCCACATCCTCGC 60 82125859 82125877 ATTTCACCTCACACCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055906 ENSRNOT00000091802 1 1 1 60 4 93981209 93981233 ATCTACAGGTATAGAAGGTGTTTCC 60 93981173 93981194 CTTATCTGCCACCTAATGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057015 ENSRNOT00000080726 3 1 1 60 9 56137057 56137080 GTCAAGGGTATATGAGTATCTCTG 58 56137020 56137042 GAGATGGAGAGTTTATTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042669.1 ENSRNOG00000031076 ENSRNOT00000047925 1 1 1 60 19 2611359 2611377 AAAGTACCACTTGCTCCTG 57 2611317 2611336 AATTCTCCACCAGATCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021625.1 ENSRNOG00000057144 ENSRNOT00000089675 3 1 1 69 13 82121326 82121344 CTCTTTCTCCACATCCTCG 57 82121273 82121291 TCACACCAGTCAGAATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071966.1 ENSRNOG00000043180 ENSRNOT00000047859 2 1 1 149 1 174825950 174825969 AAGAGCTCTTTCCTTACGGG 60 174825818 174825838 GATGATCCCATTGGTGCAC 59 Novel Rattus norvegicus 81 AABR07012795.1 ENSRNOG00000017695 ENSRNOT00000023972 1 1 1 205 2 208738761 208738785 GAGTATTTCTCTAAGCAGAAGTGAG 59 208738946 208739002 GAATTAACAGGCTGGTTTCTG 58 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07012795.1 ENSRNOG00000017695 ENSRNOT00000023972 3 1 1 213 2 208738754 208738778 GAGCAAAGAGTATTTCTCTAAGCAG 60 208738946 208739003 AGAATTAACAGGCTGGTTTCTG 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07067457.1 ENSRNOG00000032108 ENSRNOT00000051231 2 1 1 60 9 46951614 46951632 GCGAGAAATTGCTCAGGAC 59 46951572 46951590 AACATCAGTAGCTGCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008285.1 ENSRNOG00000054616 ENSRNOT00000086521 1 1 1 60 2 51412179 51412203 AAGAGATCTATGGTAGATGTTAGGG 59 51412143 51412164 CATGCTGTATTTCCTGAATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008285.1 ENSRNOG00000054616 ENSRNOT00000086521 3 1 1 60 2 51412124 51412143 GCAGACTTGTGTACAATGCA 59 51412083 51412103 GGATTAAGGTCCTTGTAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020537.1 ENSRNOG00000059133 ENSRNOT00000090623 2 1 1 80 13 29844763 29844786 GAGATTTCACCTCACATGCG 59 29844828 29844847 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 Rn60_10_0879.7 ENSRNOG00000051089 ENSRNOT00000075903 2 1 1 80 10 88065636 88065655 AGAGTTGCATCTTCTCAAGC 58 88065696 88066085 CCGTATTCATATACGCCTGTC 59 Novel Rattus norvegicus 81 AABR07015639.1 ENSRNOG00000060489 ENSRNOT00000074568 3 1 1 82 14 68170068 68170288 CGGGACCACAGAAATAGCA 60 68170004 68170022 TTCTGTTGCTTCGGTTCCT 60 Novel Rattus norvegicus 81 AABR07071742.1 ENSRNOG00000047621 ENSRNOT00000073760 2 1 1 61 8 128719692 128719711 CTGTCCTGGAACTCACTCTG 60 128719732 128719753 CAGAGGCAGGTAAATTTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059194 ENSRNOT00000090683 2 1 1 60 8 40302973 40302994 AGACAGAATGGTAGACTAAGGA 58 40302934 40302953 TTCAATTTCAGGTCCTTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554371 ENSRNOG00000042473 ENSRNOT00000064120 3 1 1 271 10 87928128 87928146 CTGTTGTGAGGAGTGTTGC 59 87927875 87927893 TTCATTTCGTCTCGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026004.1 ENSRNOG00000058010 ENSRNOT00000091231 3 1 1 83 16 58852361 58852418 CAGATCAGAGAACAGCTACAG 58 58852465 58852483 AATACATCGTCTTGCCTGG 58 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 2 1 1 71 9 43488602 43488620 ATGAGTCCCTCTTCATCCT 57 43488544 43488570 AAGAGGATTCCACAGATAACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009965.1 ENSRNOG00000053688 ENSRNOT00000079431 1 1 1 72 2 118746508 118746526 CCCGGGATACCTTCAAGAG 59 118746563 118746581 CATGCAGAAGGTACAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040393.1 ENSRNOG00000050970 ENSRNOT00000075783 2 1 1 60 X 99389390 99389411 ATGAGTCCAAACAAATGGTCTG 59 99389430 99389450 GTACAACCGAGTTCTCTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053199 ENSRNOT00000090613 3 1 1 60 3 39643933 39643955 GATACAGAGAAGATTAGCATGGC 59 39643895 39643916 GAACACTTCACGAATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010682.1 ENSRNOG00000047765 ENSRNOT00000072356 3 1 1 80 2 147207918 147207941 AGATTTCACCTCACATGCGA 60 147207982 147208002 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000055629 ENSRNOT00000080201 2 1 1 60 8 46044341 46044363 AGGGAGATACTATGATCACAGAG 59 46044303 46044324 GTCAACATATCTAGATGAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055629 ENSRNOT00000080201 3 1 1 60 8 46044341 46044362 GGGAGATACTATGATCACAGAG 57 46044302 46044323 AGTCAACATATCTAGATGAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036638.1 ENSRNOG00000056163 ENSRNOT00000079153 1 1 1 60 12 51273325 51273346 CCTCTGTCCTTGACCTAATCTC 60 51273284 51273304 CTAGCTGATAAGAAACAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0050.7 ENSRNOG00000053720 ENSRNOT00000089726 3 1 1 60 20 4983280 4983302 GGTATTTCATACTCCACCAATCC 59 4983242 4983261 AATACAAGACAGGCTGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.1 ENSRNOG00000054716 ENSRNOT00000077800 1 1 1 80 14 85236639 85236662 GAAGGAAAGAGAAATTGCAGAC 58 85236580 85236598 TTTGTCTTTCTTTGCCAGC 57 Novel Rattus norvegicus 81 SNORA25 ENSRNOG00000054457 ENSRNOT00000083866 3 1 1 60 8 13871053 13871072 AGGTCATTTCAAAGAGGGCT 59 13871094 13871113 TTTGGTCACAGCGTTAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059324 ENSRNOT00000079206 2 1 1 60 8 95883579 95883598 TCACATGTGCATCAGTAGGT 59 95883621 95883639 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037878.1 ENSRNOG00000032797 ENSRNOT00000047875 3 1 1 60 X 34714602 34714620 AACATTTGGGCTCATCCTG 58 34714560 34714578 GAACTCCTTTCCGAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069611.1 ENSRNOG00000061279 ENSRNOT00000041677 2 1 1 83 8 33902590 33902612 TCTGTAAGAAGGACACGGT 58 33902525 33902546 CTCTATCTGTTGTAGGATTGGT 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000057842 ENSRNOT00000089663 3 1 1 60 8 18517587 18517610 GCTTTATAGAATACAGGAGGACCA 60 18517626 18517647 AGGAATCACAACTACTCCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067759.1 ENSRNOG00000057866 ENSRNOT00000084904 1 1 1 140 9 61655962 61655980 TCATCTTTGTGAAGCCGGT 60 61655839 61655857 GACTTAGTGGGAAGAGGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AC126581.1 ENSRNOG00000058291 ENSRNOT00000090642 1 1 1 94 1 220071922 220071940 AAGTTCCTGAGGGACATGC 60 220071998 220072027 GTGGCTTCTGTGTTCACTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000059281 ENSRNOT00000079799 1 1 1 65 8 78579450 78579472 CCATACTACCCTGAACATATCTG 58 78579407 78579425 TAAGAAAGCCCAACCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052664.1 ENSRNOG00000053741 ENSRNOT00000091115 2 1 1 80 3 68305198 68305221 GAGATTTCACCTCACATGCG 59 68305137 68305156 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057413 ENSRNOT00000089787 3 1 1 60 8 49084540 49084560 TAACGCAGAGATTAACACAGC 59 49084500 49084521 TACAGAATGCTTCATGACTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053242 ENSRNOT00000088307 1 1 1 60 8 122685160 122685178 ATGGTTGTAACCCACTGCT 59 122685118 122685136 ATCTGGCCAGCAATCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341,ENSRNOT00000084699 2 2 4 107 20 4427865 4427884 CTACTTACCTGGAGAGCCTG 59 4427339 4427795 CCTTGAAGAATGGTGCCTG 59 Novel Rattus norvegicus 81 LOC100363141 ENSRNOG00000056662 ENSRNOT00000087009 2 1 1 60 8 86817574 86817593 CAGACATGTTGGAAGAGACG 59 86817533 86817552 CTGTCCTGTGTCTGAGTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128114.1 ENSRNOG00000060230 ENSRNOT00000086101 2 1 1 82 16 61843358 61843376 AGCTTCCTGGAACTCAGTC 59 61843291 61843310 CTTGCAGGTATTGTCCCTG 58 Novel Rattus norvegicus 81 AABR07049134.1 ENSRNOG00000051484 ENSRNOT00000090372 1 1 1 116 5 107323643 107323662 TACAAAGAGAACGCTCTGGG 60 107323545 107323563 GTCAGATTTGACGTGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000053407 ENSRNOT00000079708 2 1 1 60 3 114545477 114545496 AGCCAATGAGGTTTATCCGA 59 114545436 114545455 GAACACCAATGGCTTATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061067 ENSRNOT00000092135 1 1 1 60 3 161229293 161229315 CATCTGCCTACAACATATGTCAC 60 161229335 161229353 CTGCCACATCACCTTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.2 ENSRNOG00000056033 ENSRNOT00000085199 3 1 1 80 3 76007996 76008019 AGATTTCACCTCACATGCGA 60 76007935 76007955 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07052557.2 ENSRNOG00000057935 ENSRNOT00000078456 2 1 1 60 3 61623275 61623296 GCTGTCGTAAACTCATTACCTC 59 61623236 61623254 CCAAGGTGTCATAAAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052528 ENSRNOT00000079001 2 1 1 60 3 113388701 113388720 CCTGCATATTCCTACGACCT 59 113388743 113388761 GCATGGTTTGTCTCCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058974 ENSRNOT00000083339 1 1 1 60 3 106780779 106780797 GTGACAGGAAAGAGACAGG 58 106780818 106780839 CATTCAGATGTTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062751.1 ENSRNOG00000055921 ENSRNOT00000083431 2 1 1 76 6 6068240 6068258 GTCTGAGAAACAGATGCCC 58 6073978 6073998 CCATAGAGCATTGCAGTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 3 2 2 80 1 1441917 1441937 TGCAATCTTTCTCTGAGTCTG 58 1440630 1441878 AAAGGAGTGTACATCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07046961.1 ENSRNOG00000060950 ENSRNOT00000084379 1 1 1 81 5 12678626 12786731 TACCAGGTACAGTGAAGAAGC 60 12678565 12678586 TGTAGATTCGATACCAAAGCAC 59 Novel Rattus norvegicus 81 AABR07046961.1 ENSRNOG00000060950 ENSRNOT00000084379 2 1 1 81 5 12786840 12787078 CTCACAGGACTACTAGAGACAG 59 12786780 12786804 GTGTTCTTATGCTATTTCTCCTAGG 59 Novel Rattus norvegicus 81 AABR07000382.1 ENSRNOG00000060990 ENSRNOT00000081586 2 1 1 80 1 11770915 11770935 ATTAGACGCAATAAGGAGACC 58 11770974 11772158 CTCAAGGACATCCTTTAATTGC 58 Novel Rattus norvegicus 81 AABR07015394.1 ENSRNOG00000056871 ENSRNOT00000078937 2 1 1 98 14 53771876 53771894 CACACCATACTCCTTTGCC 59 53771956 53774427 TCTTTGGTCCCAAGTAGCA 59 Novel Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 1 2 2 80 1 11984283 11985887 GATTAGAAAGCAGGGTTTCACC 60 11984224 11984242 CACCTGCCATCAATGTACG 59 Novel Rattus norvegicus 81 AABR07015510.2 ENSRNOG00000054521 ENSRNOT00000091036 3 1 1 80 14 60349480 60350771 AACTTGGAAGAACAGGTTGG 58 60350811 60350832 GCAAAGGCATTGATATTGAGTG 59 Novel Rattus norvegicus 81 AABR07060743.1 ENSRNOG00000051546 ENSRNOT00000088444 2 1 1 80 4 92104690 92108357 CCTGTCAGAGGAAGAACGT 59 92104628 92104648 TTCCATCTCTAATCTCTGCCT 58 Novel Rattus norvegicus 81 AABR07060862.1 ENSRNOG00000053679 ENSRNOT00000084701 1 1 1 84 4 97829433 97829451 TGTTCCACAAATGTGCTGG 59 97830320 97830338 CAGCTTTGAGAAGCACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015647.2 ENSRNOG00000061727 ENSRNOT00000078124 1 1 1 86 14 68659613 68662052 AAACACCAGGAAGGACAGG 60 68659545 68659563 GTAAACTGCCAGGAAGCAC 59 Novel Rattus norvegicus 81 AABR07015705.1 ENSRNOG00000053383 ENSRNOT00000079309 2 1 1 119 14 71309108 71309126 CCTTCTCAACAGCAGAGTG 58 71308471 71309031 CATGCTATGAGCTGATATCTTAGAG 59 Novel Rattus norvegicus 81 AABR07000451.1 ENSRNOG00000053331 ENSRNOT00000084609 1 1 1 111 1 13351265 13351283 AAGCAGAAAGATGATGCCA 57 13354109 13354128 TCTCTTTCTCCCTGATTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000451.1 ENSRNOG00000053331 ENSRNOT00000084609 3 1 1 113 1 13351263 13351282 AGAAGCAGAAAGATGATGCC 58 13354109 13354128 TCTCTTTCTCCCTGATTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 2 1 1 61 5 36435104 36435123 CTGGATCCTCTACAACTGTG 58 36434047 36435083 TTCTGAGATTGCTGAAGATCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061240.1 ENSRNOG00000060647 ENSRNOT00000084745 2 1 1 80 4 111461046 111461064 TCACCATCCTGCTCTTTCC 59 111456591 111461004 TCAATAATCCATGCCCTTTGC 59 Novel Rattus norvegicus 81 AABR07047840.1 ENSRNOG00000055803 ENSRNOT00000091267 3 1 1 81 5 49959534 49959552 TCGACATAGCAGTCTCCCT 60 49959595 49981648 CCTAGGAATCCTCAGTGATCC 59 Novel Rattus norvegicus 81 AABR07015800.2 ENSRNOG00000054686 ENSRNOT00000088703 2 1 1 81 14 77663702 77663720 CAGACACATCGGAGGAGAG 59 77660711 77660729 CTCCAAGGAAGTTTCTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061249.1 ENSRNOG00000053528 ENSRNOT00000088362 2 1 1 90 4 111871496 111871515 ATGGTGGTATGATCTGACCT 58 111842510 111842531 TCTTGTATGAAGCTAAGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061249.1 ENSRNOG00000053528 ENSRNOT00000088362 3 1 1 91 4 111871496 111871516 GATGGTGGTATGATCTGACCT 59 111842510 111842531 TCTTGTATGAAGCTAAGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061261.2 ENSRNOG00000060697 ENSRNOT00000085515 2 1 1 82 4 112646259 112646277 AGACTATCTCCTGTGGGCA 60 112644463 112646216 TCACTTCGGAACTTTCTTTCAC 59 Novel Rattus norvegicus 81 AABR07030334.1 ENSRNOG00000054653 ENSRNOT00000090427 1 1 1 86 10 81887762 81887781 AGCTATGATGAAGACCACAC 57 81884211 81887714 AAATGGGATCCTTTGAGGAC 58 Novel Rattus norvegicus 81 AABR07048303.2 ENSRNOG00000055665 ENSRNOT00000077721 1 1 1 80 5 71461322 71461343 TTCTACTATTACCACTCCCTGG 59 71452153 71461281 CACAACAGCCATATGCCTC 59 Novel Rattus norvegicus 81 AC117122.1 ENSRNOG00000053986 ENSRNOT00000081751 3 1 1 154 4 120882753 120882771 TGTTTCAGCTCACTCTGCA 60 120918186 120918204 AGGATCTTCAGTTCTGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC098180.1 ENSRNOG00000061271 ENSRNOT00000079772 2 1 1 94 14 100131852 100133750 CTTGGACAGGTTGGAAGAC 58 100131776 100131795 CTTTCTTCATGTTGGAGCAC 57 Novel Rattus norvegicus 81 AABR07016578.2 ENSRNOG00000056722 ENSRNOT00000079867 3 1 1 85 14 105084284 105084809 GAACTCTGCTCTGAAGACC 58 105084857 105084876 AAATCAGTCGTGAGATTCCA 57 Novel Rattus norvegicus 81 AABR07048898.1 ENSRNOG00000056560 ENSRNOT00000091679 1 1 1 80 5 96243891 96244165 TCCTACATGACTACTAGATGCAG 59 96242818 96242836 ACAACTCGTTTCTGTCCCA 59 Novel Rattus norvegicus 81 AABR07061573.1 ENSRNOG00000055841 ENSRNOT00000085472 1 1 1 81 4 134096316 134096334 CACAGGATAGCTGTGGTCC 60 134096378 134101643 CGACAGACAGGAATCTTCGT 60 Novel Rattus norvegicus 81 AABR07000725.1 ENSRNOG00000055637 ENSRNOT00000090824 3 1 1 84 1 24826734 24828001 GAACAAGAGCTCCTACTTCAG 58 24828044 24828065 GTTGTGCAGTAATGACATTACC 58 Novel Rattus norvegicus 81 AABR07016721.1 ENSRNOG00000057717 ENSRNOT00000084993 3 1 1 96 14 112467128 112467146 TTTCCTAGATGTCGGAGCT 58 112423076 112467070 CTTGAACTTGGACTTACTCGT 58 Novel Rattus norvegicus 81 AABR07001010.1 ENSRNOG00000057164 ENSRNOT00000087059 1 1 1 60 1 33068581 33068600 CTAAGGATGGTACCACCCTG 59 33061941 33061960 GAGGAACTTCTGTATCGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030690.1 ENSRNOG00000059096 ENSRNOT00000089444 2 1 1 60 10 99771483 99771501 TTAGATGTTCAGCCCTGGG 59 99731179 99731198 GGCCAGTTGTCAAATTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030706.1 ENSRNOG00000058127 ENSRNOT00000088591 2 1 1 80 10 100878423 100878442 GGAAAGAGATTCGATGAGGC 59 100874034 100878380 TGGGATCAATGCTTTCTGG 58 Novel Rattus norvegicus 81 AABR07001018.4 ENSRNOG00000056842 ENSRNOT00000079972 2 1 1 83 1 33805037 33810665 GAGAAGTGTGAAGGTAAGACAC 59 33810708 33810727 TTCCTTCATGGGACCATCTG 60 Novel Rattus norvegicus 81 AABR07001018.4 ENSRNOG00000056842 ENSRNOT00000079972 3 1 1 85 1 33805035 33810665 TAGAGAAGTGTGAAGGTAAGACAC 60 33810708 33810727 TTCCTTCATGGGACCATCTG 60 Novel Rattus norvegicus 81 AABR07030739.1 ENSRNOG00000057534 ENSRNOT00000082716 2 1 1 111 10 102604623 102605981 ATCCCTTCAGAGCTGAAGAC 59 102606055 102606073 TGATCACTGTCATCTGGGC 60 Novel Rattus norvegicus 81 AC103292.1 ENSRNOG00000055109 ENSRNOT00000087363 1 1 1 82 4 159734353 159737086 AAGTGAAGAGCTTCCACAC 58 159734289 159734307 CTTGGTAAAGGACCTGCTC 58 Novel Rattus norvegicus 81 AABR07017113.1 ENSRNOG00000053511 ENSRNOT00000090127 3 1 1 75 15 11913327 11913345 CTGCCTCTGCAAGTTTCTC 59 11939495 11939514 AAATTCTGTGATCTTCGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062068.1 ENSRNOG00000058192 ENSRNOT00000091238 1 1 1 74 4 160206120 160206138 CTCAGGCATCGAGATCGAG 60 160207329 160207350 CGTATATTTGCAGTTCCATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017198.1 ENSRNOG00000056086 ENSRNOT00000091492 1 1 1 80 15 17264549 17264570 TTCATTTCGCCTGATTTCTGAG 59 17264610 17265775 GTCTGATTCACCTGAACCCT 60 Novel Rattus norvegicus 81 AABR07017200.1 ENSRNOG00000055488 ENSRNOT00000077112 1 1 1 60 15 17651278 17651297 AGCCTTACTTCTCATCTCCT 58 17659261 17659279 AATGCTGTGTTAGGTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017237.1 ENSRNOG00000053868 ENSRNOT00000079102 3 1 1 81 15 19068461 19068479 ACCTTCCAGAATTTGGCCT 59 19068518 19068752 CTCTATGATTCTCTGTAATCTCCTG 58 Novel Rattus norvegicus 81 AABR07049535.2 ENSRNOG00000061048 ENSRNOT00000079681 2 1 1 83 5 127123406 127123425 TAAGACAGTTTGCCTTGGGA 59 127123212 127123230 TCACTTCTCTGTGCCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049535.2 ENSRNOG00000061048 ENSRNOT00000079681 3 1 1 83 5 127123407 127123425 TAAGACAGTTTGCCTTGGG 58 127123212 127123230 TCACTTCTCTGTGCCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030939.1 ENSRNOG00000061691 ENSRNOT00000086613 2 1 1 80 10 110125575 110125594 TTCCAGGTGAAATTGCTCAG 59 110125635 110126715 CGTCTCCAAACAAAGTATCCA 58 Novel Rattus norvegicus 81 AABR07062404.2 ENSRNOG00000051444 ENSRNOT00000078325 2 1 1 89 4 175052247 175054389 CTGCCTCTTTCTTATAAAGGTTCC 60 175052181 175052199 AAGACGCTGTTTAGGGAGG 59 Novel Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000081949 2 1 2 92 1 42217053 42217071 TAGCTGAGTCCACTGAGGA 59 42217124 42229990 GGTCCAGAAATTTCAAGTACCT 58 Novel Rattus norvegicus 81 AABR07049688.1 ENSRNOG00000052085 ENSRNOT00000083808 3 1 1 93 5 133151607 133159554 CAAGGGAAGAGATCTTTCTGTC 59 133151535 133151553 GCATTCCAGCATCCTAGGA 59 Novel Rattus norvegicus 81 AABR07017649.2 ENSRNOG00000058787 ENSRNOT00000080877 3 1 1 87 15 29652323 29652567 GGCTTTGTCTGGATGTAATATGG 60 29652258 29652276 CTCCAGGGTGACTTCTTCC 59 Novel Rattus norvegicus 81 AABR07018050.1 ENSRNOG00000054986 ENSRNOT00000085916 3 1 1 80 15 37343455 37345749 GGATTCTATCTCAGATTCAGACCA 60 37343398 37343419 GGATCCTCATCATGTGAATCTG 59 Novel Rattus norvegicus 81 AABR07050061.1 ENSRNOG00000058693 ENSRNOT00000077103 1 1 1 81 5 149707902 149707920 ATTCCTGTTGGGCTCAGTC 60 149666788 149707858 CTTTCTCCACCTCTACAGGG 59 Novel Rattus norvegicus 81 AABR07063511.1 ENSRNOG00000051741 ENSRNOT00000082269 1 1 1 88 6 32592972 32595647 ATATTGAAGGGCTTGGTGTG 58 32592903 32592921 AGTGGAATCTCACGAGCTC 59 Novel Rattus norvegicus 81 AABR07018119.1 ENSRNOG00000053233 ENSRNOT00000088052 1 1 1 80 15 40797236 40797256 TAGTACATTCCACTGGCTGTC 60 40797298 40797939 AACTGAGGGATGCAAACCA 60 Novel Rattus norvegicus 81 AC118963.3 ENSRNOG00000057705 ENSRNOT00000085459 2 1 1 88 5 151669098 151673663 CTTTGCTAAGTGGCTCAATCC 60 151673712 151673731 GGAGTCAGCCTAACCTTCTC 60 Novel Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 1 1 1 64 1 56541434 56541452 TCACCTGAAGAGCAGTCTG 59 56539474 56541406 AAACTATGACTTCTGCCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063553.1 ENSRNOG00000055840 ENSRNOT00000078414 3 1 1 80 6 35091806 35091826 GATCCCTGTATAGTGTAGGCA 59 35091866 35096306 GTCAAGCTTTCACATCTTGGA 59 Novel Rattus norvegicus 81 AABR07050135.1 ENSRNOG00000053363 ENSRNOT00000090564 2 1 1 62 5 153036524 153036542 CCTTAGACATGCCTTGCAC 59 153034847 153034865 CGTTGACACTGGAGATCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032171.1 ENSRNOG00000052184 ENSRNOT00000083820 2 1 1 83 18 50773147 50785829 AACATTTCAAGAACAGCCCTG 60 50785874 50785892 TTGGCTCCATCAACAAGGT 60 Novel Rattus norvegicus 81 AABR07018183.1 ENSRNOG00000053041 ENSRNOT00000079248 2 1 1 86 15 45237984 45238002 CAGAACTTGCCACTGACTG 59 45231646 45237938 GGGCTTGATACTAATGAATGAGG 59 Novel Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 2 2 2 81 15 46495173 46495191 ATCTTGGGAAAGGCAACGA 60 46495232 46502323 GGTCATCTTCTTTGAATCTCCTG 59 Novel Rattus norvegicus 81 AABR07018226.2 ENSRNOG00000060608 ENSRNOT00000078520 1 1 1 60 15 47938717 47938735 CTTGTCAGCAGACAGTGTC 59 47938556 47938574 GGAATGAAGGTGAGTCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050283.2 ENSRNOG00000061263 ENSRNOT00000082432 1 1 1 60 5 159213622 159213640 CTTCCTTGGTCCTGGTACC 59 159213956 159213974 TTGATTCGTCGTGGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050288.1 ENSRNOG00000057085 ENSRNOT00000084042 1 1 1 95 5 159805228 159805246 CAGCTACATGAACTTGCCC 59 159805305 159808018 TGTAGTGAGATCCTTGCGA 58 Novel Rattus norvegicus 81 AABR07018269.2 ENSRNOG00000052066 ENSRNOT00000085504 1 1 1 84 15 49614119 49619469 TCTCCAGTTCCAGCAAGTG 60 49614053 49614074 GCAATGGATGAAGTCTTATGGG 60 Novel Rattus norvegicus 81 AC141168.1 ENSRNOG00000061481 ENSRNOT00000079896 2 1 1 80 15 51103242 51103262 AGAGTAGAGAAAGGTGGTTGG 59 51097938 51103203 GTGATAGAGCACTAAAGCATGG 59 Novel Rattus norvegicus 81 AABR07032261.2 ENSRNOG00000051724 ENSRNOT00000084329 1 1 1 80 18 57572583 57572602 GGTTTGTTGGTTCATATGGC 58 57553174 57572540 GGATCATCGAGGGTTTGTG 58 Novel Rattus norvegicus 81 AC094126.1 ENSRNOG00000055715 ENSRNOT00000087064 3 1 1 85 5 164880673 164880691 ACATTCCTTGCTCCTAGGG 59 164879347 164880624 CTAAAGCACTTGTCCCTGC 59 Novel Rattus norvegicus 81 AABR07032296.1 ENSRNOG00000058084 ENSRNOT00000079632 2 1 1 80 18 60253280 60253298 GGACATTACAGGAGCAAGG 58 60253339 60254424 TTTCCCACACCAGATTAATTCC 59 Novel Rattus norvegicus 81 AABR07032327.1 ENSRNOG00000052630 ENSRNOT00000080240 2 1 1 60 18 61176541 61180389 GGAACACAGTGGATACCAG 58 61176499 61176518 AGTTCCACCATGTAGTTCAG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07002382.1 ENSRNOG00000058893 ENSRNOT00000083875 1 1 1 80 1 72260555 72260577 AGTTCTAGAAGAACCAGTGAGAG 59 72259160 72260515 AGGGAATGAATTCCCACCA 59 Novel Rattus norvegicus 81 AABR07002382.1 ENSRNOG00000058893 ENSRNOT00000083875 2 1 1 80 1 72260555 72260576 GTTCTAGAAGAACCAGTGAGAG 58 72259159 72260515 TAGGGAATGAATTCCCACCA 59 Novel Rattus norvegicus 81 AABR07032422.1 ENSRNOG00000055882 ENSRNOT00000077969 3 1 1 60 18 64792695 64794072 CAACTGGTCCTTGAATGCC 59 64792653 64792674 GGAGAAGCAGTTAGAATGTCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07018503.1 ENSRNOG00000057305 ENSRNOT00000086501 1 1 1 80 15 62239218 62239238 ATGCTAAACATTCACTCTCCC 58 62239280 62240249 TTGGGAACACTATCGTCCT 58 Novel Rattus norvegicus 81 AABR07018807.1 ENSRNOG00000060601 ENSRNOT00000079749 2 1 1 109 15 73988495 73988515 GGAGGAAGCATACATTCTTGG 59 73988580 74047583 GAAGAAATTCTAGAACCCATAAGGG 59 Novel Rattus norvegicus 81 AABR07072841.1 ENSRNOG00000052706 ENSRNOT00000078087 2 1 1 96 3 3574880 3574898 TGTTTAAAGGGACAGAGCG 58 3584052 3584070 AATCAGTGAGCATCTGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019091.1 ENSRNOG00000061423 ENSRNOT00000077263 2 1 1 80 15 87679289 87679308 TGTTGAAGAAACCCTTGCAC 59 87679349 87679887 GTTCGCTTTGAGACACTAGAC 59 Novel Rattus norvegicus 81 AC114093.1 ENSRNOG00000053481 ENSRNOT00000078523 3 1 1 80 18 74778909 74787625 ACCCTATGAAACTACAGGAGAG 59 74787666 74787684 AGGGTCTTGTCTTCATGCT 59 Novel Rattus norvegicus 81 AABR07019253.1 ENSRNOG00000057939 ENSRNOT00000080408 3 1 1 60 15 96608602 96608885 AAAGCCTACTTCTTTAGGCCA 60 96608562 96608583 TAAATCCCAGTTGCATAGAGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 2 1 1 66 18 79311607 79312150 GATGGATGGGTGTCTCAGG 60 79311559 79311583 GAAGTCAAATCCTATTCTTGTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC142138.2 ENSRNOG00000059375 ENSRNOT00000091127 2 1 1 81 3 9499237 9499255 TGAATGTACTGAGCCTCCT 58 9499300 9500640 CAGATTACAAGACACCGCC 59 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000088090,ENSRNOT00000080938 1 2 2 93 15 98619331 98619349 TAACTGTAGCTTGCGAGCT 59 98620276 98620294 GCACAACTCTGCATAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002969.1 ENSRNOG00000052945 ENSRNOT00000077404 3 1 1 85 1 90832046 90832064 GTCATTGACGTGGACACTG 59 90832111 90848607 GAATGGATCTTTCCCATCCAG 59 Novel Rattus norvegicus 81 AABR07019383.1 ENSRNOG00000056294 ENSRNOT00000080477 2 1 1 81 15 103286821 103286931 CAGGAACCAGATCTGTGGA 59 103286974 103286994 ACATCAACTCCAGAACTTGTC 58 Novel Rattus norvegicus 81 AABR07019387.2 ENSRNOG00000058656 ENSRNOT00000078015 1 1 1 82 15 103524433 103533407 TACACAAAGATTACGGCGG 58 103533452 103533471 AATTAGTCTCTGGTGTGCTG 58 Novel Rattus norvegicus 81 AABR07019437.3 ENSRNOG00000053672 ENSRNOT00000086016 2 1 1 81 15 105486019 105486038 AACTCTACACGATCCTTTCC 57 105469188 105485975 CCCATGTTGAAAGGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 3 1 1 60 6 97335394 97427416 GGTTCTTCACTATGCAAAGGAG 59 97427434 97427455 CTCCTTTCTCCTCTGTAGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065044.1 ENSRNOG00000052650 ENSRNOT00000091878 2 1 1 108 6 105553950 105564153 GAATCCAGGCATGTGTTCAG 59 105564224 105564242 ATCCCAAAGTCTCAGTGCC 60 Novel Rattus norvegicus 81 AABR07065050.1 ENSRNOG00000055943 ENSRNOT00000081771 1 1 1 95 6 106285380 106285398 AAACCAAAGGACTGGTTCC 58 106285457 106285652 CATCCTGGAGGAGATCAGG 59 Novel Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 1 1 1 60 11 27599623 27607277 AGTCAGAAATTGAGAAGCTGC 59 27607298 27607317 ATGTGATCTCGCTCCTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051952.1 ENSRNOG00000060472 ENSRNOT00000083047 3 1 1 87 3 30043793 30043814 CATTTGACCTGGAGGAATAGAG 58 30043862 30044409 TGCAGTTTACAAGGCTCTG 58 Novel Rattus norvegicus 81 AC127764.1 ENSRNOG00000054104 ENSRNOT00000085099 3 1 1 149 13 47202595 47203737 CTTCTTTCACAGGTGTCCG 59 47202464 47202483 CTGAAGTTCATTCAGCTCCT 58 Novel Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 3 1 1 60 6 117418997 117419018 ACTTATTGTCTTGTGTAGCCAC 59 117418161 117418976 AGTCTTCCCACTTTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 2 1 1 96 11 37475013 37475031 AGCTTCAGCACCTTAATCC 58 37459843 37474953 AAACAGCCTTGATGTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021018.2 ENSRNOG00000059794 ENSRNOT00000078481 3 1 1 80 13 53649160 53649178 AGGCGACAAATACAGAGCA 59 53649220 53651987 GAGCTTTCTGCAGGTAAACAG 60 Novel Rattus norvegicus 81 AABR07065259.1 ENSRNOG00000059623 ENSRNOT00000083853 3 1 1 122 6 117492696 117495561 AAATTCTTAGGTTGGCCTGG 58 117495646 117495664 GTGAAGGATTGATGCAGCT 58 Novel Rattus norvegicus 81 AABR07052195.1 ENSRNOG00000051723 ENSRNOT00000084104 2 1 1 93 3 41634432 41642436 GGTTAAGTGGAGAGCTGGAG 60 41634358 41634382 CCATCTCTTTATCTCATATTCGTCC 59 Novel Rattus norvegicus 81 AABR07021293.1 ENSRNOG00000057047 ENSRNOT00000081122 3 1 1 66 13 64551466 64551487 AATCGAGAGGATAATTCAGGTG 58 64549152 64551442 AACATATTCCTTTGCACCAAGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 2 1 1 60 1 108839880 108839899 TTATGGAAAGCACCTGAGTG 58 108830669 108839860 ACTGATATGTTGGTGCTATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065334.1 ENSRNOG00000052245 ENSRNOT00000084335 1 1 1 80 6 121591803 121591821 TAATGGCATTTGGACCTGC 59 121586124 121591762 CTATTGTACCTTGTTCCCTCTG 58 Novel Rattus norvegicus 81 AABR07003563.1 ENSRNOG00000055122 ENSRNOT00000078995 3 1 1 122 1 115606778 115606798 GACCTATAATGTCTCCTTGGG 57 115603487 115603505 CAGAAACCTGAGGTTCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052523.2 ENSRNOG00000060690 ENSRNOT00000086643 2 1 1 80 3 59394019 59394840 CTAGCATCTTTAAATGGTCTAGACC 59 59393963 59393982 GGGTTCAAGTCTCACAACTG 59 Novel Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 1 1 1 60 13 80457750 80460440 TTCAGATCCGATGGAGGAC 59 80457708 80457730 CCATAGAGATACTAGGAGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021610.1 ENSRNOG00000060416 ENSRNOT00000088845 2 1 1 80 13 81327798 81327818 TCCTCATTGAAAGCATGACCT 60 81327854 81330028 CATATGAGGTAGCAGAATGATACTG 59 Novel Rattus norvegicus 81 AABR07052587.3 ENSRNOG00000053470 ENSRNOT00000078374 3 1 1 82 3 64154793 64154812 GAAGACCCTCCCATCTTCAC 60 64154857 64155096 GAAACATGGTCCACAGCAG 59 Novel Rattus norvegicus 81 AABR07034598.1 ENSRNOG00000058711 ENSRNOT00000088004 3 1 1 74 11 80630348 80630366 TCACAGGTGCAGAAAGGAG 60 80633034 80633052 ATGTTCCAGTGCAATCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 1 1 1 60 3 66075105 66080121 AGGAAGAACATCCACTACATACTC 60 66075068 66075086 AGTGTAGACCTGACACCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021760.1 ENSRNOG00000059079 ENSRNOT00000079623 2 1 1 64 13 90160402 90160421 ATACAGGATCTCTGCTCCTC 58 90167168 90167189 ATCAGATCACTAGTCGAATCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 3 1 1 60 11 83375961 83376982 TGTCCTTCTGCTCATCCAC 59 83375919 83375937 AGGGTCTCACATTCTTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.1 ENSRNOG00000056559 ENSRNOT00000084186 2 1 1 108 11 83413092 83415192 GTACATCGCGAGCAATACC 59 83415261 83415282 TCTGTCTTGATACTTGAGAGCA 59 Novel Rattus norvegicus 81 AC125847.3 ENSRNOG00000058735 ENSRNOT00000090280 2 1 1 101 6 129441399 129442822 ATCCAGGTGATAGGGTGGA 59 129442887 129442905 GACACTGACCTTGACCCTC 60 Novel Rattus norvegicus 81 AABR07065476.1 ENSRNOG00000057859 ENSRNOT00000080761 3 1 1 148 6 130201910 130201928 AAAGGAGGCCATCTTCCAG 59 130202037 130204242 TTCAAAGCACCTTCTTAGAACC 59 Novel Rattus norvegicus 81 LOC103692343 ENSRNOG00000059585 ENSRNOT00000082828 1 1 1 80 13 95717629 95717649 TGGAGACAATAGAAACATCCC 58 95712035 95717587 GGACGGATAGAATCGTCTG 57 Novel Rattus norvegicus 81 AABR07034750.1 ENSRNOG00000060228 ENSRNOT00000090971 1 1 1 90 11 87346239 87346257 GAATGGACCTGTCTTTGCA 58 87346311 87355145 CACAATGTCACCAACCTCC 59 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000081827 3 1 2 83 13 100072352 100072458 GTGTTTAAGGTGGTCTCTTCG 59 100072503 100072521 ATCCCTCATGATGGTCGTG 59 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000083200,ENSRNOT00000081827 1 2 2 70 13 100068877 100068895 AACATTGACCTTGCTCCAG 58 100071959 100071980 TTCTCAGGGTTTCTACAATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021996.1 ENSRNOG00000051880 ENSRNOT00000082633 1 1 1 80 13 101953623 101953642 ATGAAAGGAAAGCGTATGGA 57 101953685 101956750 CCTTTATGGACACCTCCAG 57 Novel Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 3 1 1 69 3 80966021 80966039 CACTGACAAACTGAGCACC 59 80966072 80968172 CAGACATGTGACGACAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000085147 3 2 3 141 12 3213529 3221988 CTGTCATCTTCCTTCAGATTCAC 59 3223424 3223445 GTCCTTTCTCTGCAATTATGGA 59 Novel Rattus norvegicus 81 AABR07022056.1 ENSRNOG00000056806 ENSRNOT00000078696 2 1 1 81 13 104806683 104806701 CTGAGGATCACAGAGCAGG 60 104806746 104806764 CTGTCTGGACTTGTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043,ENSRNOT00000080405 1 2 2 82 12 3807737 3807755 CACCTATCCAGAGCATGAG 57 3807801 3807927 GGGAGTATGCCTTCATGAC 58 Novel Rattus norvegicus 81 AABR07052915.1 ENSRNOG00000055847 ENSRNOT00000089284 1 1 1 80 3 84147667 84149141 ATACCTCTGACTGAGTTGAGTG 59 84149180 84149200 CTGTTCATGACTTTGCTGTCC 60 Novel Rattus norvegicus 81 AABR07065815.2 ENSRNOG00000056934 ENSRNOT00000088727 2 1 1 80 6 142602163 142602183 CACACTGACTCTAACCATGGA 60 142602021 142602124 TTAACTTGGGAGTAGACACCTG 60 Novel Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 3 1 1 81 3 93435879 93435897 AGAAATTCAGGCAACAGCA 58 93435942 93436790 GCCTTCTTTCCATCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 3 1 1 153 12 9332097 9332589 GTCTCCTCCTTGAACCAGG 59 9332705 9332724 TTAAATACTGCCCACACCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035307.1 ENSRNOG00000060644 ENSRNOT00000081526 1 1 1 80 12 10017433 10019453 CAGAATTCAGATGACGCGG 59 10017371 10017390 TCAAATCCTCTCGACTCCAC 59 Novel Rattus norvegicus 81 AABR07065933.1 ENSRNOG00000057960 ENSRNOT00000091437 3 1 1 81 6 146979395 146979413 AGAAACAATCAGCCAGACC 58 146978116 146979350 CCTGATGAAATCACCTGCC 59 Novel Rattus norvegicus 81 AABR07004482.1 ENSRNOG00000054650 ENSRNOT00000082947 2 1 1 84 1 144847522 144847847 AAAGAAAGAGTCATGGGCC 58 144847895 144847913 ACATTCACGAAGAAGGTGG 58 Novel Rattus norvegicus 81 AABR07066567.1 ENSRNOG00000052346 ENSRNOT00000082318 3 1 1 81 9 11588952 11589330 GTCAAATCCTATGGAACTTGATGG 60 11589369 11589388 CTCCTTCTCCTGTACTTGGC 60 Novel Rattus norvegicus 81 AABR07053481.1 ENSRNOG00000058370 ENSRNOT00000078988 1 1 1 80 3 109582019 109582037 CAGATTCGAGGTGGTTCAG 58 109581535 109581976 TCACATTGCTCCTGAAACTG 59 Novel Rattus norvegicus 81 AABR07035591.1 ENSRNOG00000052542 ENSRNOT00000036416 1 1 1 80 12 20141320 20141339 TTCCTGGACATAATCTGGCC 60 20141382 20141695 CTCCTGAGTTCCCAGTGTG 60 Novel Rattus norvegicus 81 AABR07035779.2 ENSRNOG00000061063 ENSRNOT00000080849 2 1 1 88 12 22322069 22322088 GATATGACGGAAGGCATCTG 58 22322136 22322674 GTTATTGTTGTAGTTCCCACAC 58 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 1 1 1 60 12 22339006 22339024 AATCTCAATGTGGCTGCAG 59 22339048 22339404 ATCCAGTTCTTCCCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066870.1 ENSRNOG00000061014 ENSRNOT00000082099 1 1 1 99 9 20339527 20340804 TGGATAACAAGATGCGGCA 60 20332773 20332796 GGCTTGGTAACAATATCTGAAGAG 60 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 3 2 2 89 12 22369855 22369876 TGGCTTTGTGTTCAATAAGGAC 60 22369925 22370341 TTCTTACCTGCCGGAATGAG 60 Novel Rattus norvegicus 81 AABR07066957.1 ENSRNOG00000054358 ENSRNOT00000079184 2 1 1 112 9 23714484 23720979 TCATTGGAGGTATCATAGCAG 57 23721053 23721071 CTCCTTCGTCTGATTGGTG 58 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000085881 3 1 2 95 16 31172101 31172203 AAAGGATCAGATCAGGTTCCT 59 31166565 31166583 GATGGAGACACAGCTCCTC 60 Novel Rattus norvegicus 81 AABR07053870.1 ENSRNOG00000058774 ENSRNOT00000086934 1 1 1 80 3 131609591 131609609 AGAACATCTGACACCAGCC 60 131609651 131639445 TGTCAATTTCTCTGTCTGCCT 60 Novel Rattus norvegicus 81 AABR07035864.1 ENSRNOG00000052043 ENSRNOT00000078717 3 1 1 84 12 25952259 25952277 AACTGGCTTCAGAAATGGG 58 25952324 25965449 TGGAATGACCCTTTCTTCCA 59 Novel Rattus norvegicus 81 AABR07025386.1 ENSRNOG00000052230 ENSRNOT00000080111 1 1 1 99 16 36297241 36297259 AGATGGGTGAGAGTTTGCC 60 36295562 36297178 GTTAGCTTCTCCGGACCTC 60 Novel Rattus norvegicus 81 AABR07005573.1 ENSRNOG00000057531 ENSRNOT00000091260 1 1 1 65 1 188254896 188254914 CAATTCGAGTCGGGATTGG 59 188254943 188258260 ACACTTCGGGATCCTTCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07025745.1 ENSRNOG00000052681 ENSRNOT00000077550 1 1 1 80 16 47828518 47829395 CAGGCTTGATGTCAGAGGA 59 47828456 47828475 AGAGTAGCCTTCCTTTGCTG 60 Novel Rattus norvegicus 81 AABR07025986.1 ENSRNOG00000057136 ENSRNOT00000083270 1 1 1 60 16 57841701 57841722 ATCCTTTGTGACTATGTAGCTC 58 57841743 57849410 TACTGGAATCTGGGCTGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07036376.1 ENSRNOG00000060770 ENSRNOT00000087812 1 1 1 64 12 40971021 40971039 AATTAAGGCTGCAGCAAGC 60 40978287 40978305 ATAAGTGAGCTTCCCGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036406.1 ENSRNOG00000054037 ENSRNOT00000078840 3 1 1 81 12 42177831 42178194 TCACTGGTTCAGAAGAGGC 59 42178239 42178257 CCCTCTGGATCCTTGAACC 60 Novel Rattus norvegicus 81 AABR07036407.1 ENSRNOG00000053908 ENSRNOT00000079592 1 1 1 90 12 42217409 42217427 TGTCTTTCCCACCATCCTC 59 42217047 42217065 CCTCATCTTCTCAGGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036407.2 ENSRNOG00000054442 ENSRNOT00000080098 1 1 1 80 12 42217775 42218147 GGGACTAAAGTTTGTTCCCAG 59 42218186 42218207 AGAAATGAAGAACCAAGGTGTG 59 Novel Rattus norvegicus 81 AABR07005921.1 ENSRNOG00000057633 ENSRNOT00000078400 2 1 1 80 1 206560238 206560256 GACTACAGGACCATCATGC 58 206560297 206565213 CTCTTTGTAGAAATTCAGCACG 58 Novel Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 3 1 1 62 16 64923466 64924522 TATTCACTGACTGTCAGCAGG 60 64923424 64923447 CAACAGGATTAGTAAATACCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005949.1 ENSRNOG00000059505 ENSRNOT00000091989 3 1 1 82 1 208274728 208274746 GAGGTCTACCACTTCTGGC 60 208274790 208308097 CTTCTTGTGCAGAATGTCCTC 59 Novel Rattus norvegicus 81 AABR07036417.1 ENSRNOG00000056261 ENSRNOT00000083958 1 1 1 60 12 42646955 42646973 CCAGTTTCACGTCTTGCTC 59 42642391 42642410 TTCCTCATCCGTCTTGTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000084407 1 1 2 80 16 65194760 65194779 GGAGTTTCCCTATCAACTGC 58 65194822 65254092 CACTTAGCGCTCCTTTCAG 59 Novel Rattus norvegicus 81 AABR07026151.1 ENSRNOG00000061567 ENSRNOT00000082609 3 1 1 80 16 65931009 65932058 ACAACACATAACAGAAGCCTC 59 65932098 65932118 ATTTCCTTCTCCTCTTGGTCC 60 Novel Rattus norvegicus 81 AABR07005965.1 ENSRNOG00000055312 ENSRNOT00000086951 3 1 1 80 1 209511021 209511042 TGTACAGAGTCTATTTCTGGGA 58 209508700 209510980 GAGGATCAGTTAAGCCGTG 58 Novel Rattus norvegicus 81 AC129370.1 ENSRNOG00000051812 ENSRNOT00000085734 2 1 1 80 9 66878605 66882969 AAGACGAGAACATGCTACAG 58 66883010 66883030 TTGGAGCACTGAATTCTAAGC 59 Novel Rattus norvegicus 81 AABR07054593.1 ENSRNOG00000057352 ENSRNOT00000078986 2 1 1 90 3 162690302 162690320 GAGAAGCCAGAGGGAATGG 60 162688650 162690249 GCTTTAAGATCAAGGCAGGC 60 Novel Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 3 1 1 68 9 69756774 69756792 ATGGGATTGTTTGAGAGCC 58 69756824 69770256 AAATCTGCATAAGCAGCGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054662.1 ENSRNOG00000057226 ENSRNOT00000083036 2 1 1 83 3 166270483 166278486 GCTGCTGAATTAAGCAACTC 58 166270419 166270437 TTGTCAGGATGAATGCAGG 58 Novel Rattus norvegicus 81 AABR07054755.1 ENSRNOG00000052268 ENSRNOT00000084074 3 1 1 96 3 168821027 168821045 GCTATCCCATGATGCTCTG 58 168821105 168821697 TTTGTAGTCCGCAACTGTG 58 Novel Rattus norvegicus 81 AABR07037149.1 ENSRNOG00000058184 ENSRNOT00000083697 2 1 1 80 X 14547457 14548427 TTTAGTCAAAGACCAAGGAAGC 59 14547398 14547420 TTCTCTTACCTGATTCCCTTAGC 60 Novel Rattus norvegicus 81 AABR07068212.1 ENSRNOG00000059666 ENSRNOT00000085860 2 1 1 82 9 90934225 90934244 TCACAGGACTGTACAAAGGA 58 90934288 90936958 TGTAGGATGCTTCCCTAACG 59 Novel Rattus norvegicus 81 AABR07072528.4 ENSRNOG00000061728 ENSRNOT00000079557 1 1 1 80 16 82333268 82333286 CTATGGAAAGCGCTCACTG 59 82333329 82341360 CTGCTTCACGTCTGTTTCTC 59 Novel Rattus norvegicus 81 AC095563.2 ENSRNOG00000059544 ENSRNOT00000083435 2 1 1 73 9 95362214 95362232 CATGCGCATTACTTCATGC 58 95383870 95383888 CTCCATAAGGGCCTTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07055992.1 ENSRNOG00000053142 ENSRNOT00000083024 3 1 1 81 7 16785506 16848523 GTTGAGTCTGAACATAACTGCT 59 16785446 16785464 GTAGTCACCAGTTGCAGAG 58 Novel Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000084627 2 1 2 60 X 72724629 72724647 GATGAAGGAACGTCCTGAC 58 72724963 72724981 CATGTGTCCAATTGCACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006685.1 ENSRNOG00000059944 ENSRNOT00000085934 1 1 1 66 1 246938186 246938204 GAATTCCTCGGTCTGAGAC 57 246927908 246927926 TTTCCATATGGGCTCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006736.1 ENSRNOG00000061760 ENSRNOT00000083581 1 1 1 80 1 250660522 250662372 ATGTCCCAGTAATTACAGAGCT 59 250660463 250660481 TATCCTCTGCCTGGATCCT 59 Novel Rattus norvegicus 81 AABR07056422.1 ENSRNOG00000059037 ENSRNOT00000086387 2 1 1 103 7 24672147 24672165 ACTATTCCAGGCAGATGGT 58 24672924 24672942 TACCTGCTCTATGCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040629.1 ENSRNOG00000052831 ENSRNOT00000080500 2 1 1 85 X 106749564 106749582 TATCTCCGTGAAGGAAGGC 59 106748243 106749515 CACAGACTTGAAGACCTGC 59 Novel Rattus norvegicus 81 AABR07026986.1 ENSRNOG00000057787 ENSRNOT00000085522 2 1 1 90 17 8524001 8524019 TGATTCTCCATCGCCTCAC 60 8523037 8523950 CGCATATCTTCAGCTTTATGGA 59 Novel Rattus norvegicus 81 AABR07026989.1 ENSRNOG00000057239 ENSRNOT00000091032 2 1 1 84 17 8694977 8773372 GTCCACAAGACAAGGTTTGG 59 8694912 8694930 CTAGCTGTCAGAAGCCTGG 60 Novel Rattus norvegicus 81 AABR07026989.1 ENSRNOG00000057239 ENSRNOT00000091032 3 1 1 86 17 8694976 8773370 CCACAAGACAAGGTTTGGG 59 8694908 8694926 TCTGCTAGCTGTCAGAAGC 60 Novel Rattus norvegicus 81 AABR07068799.1 ENSRNOG00000052844 ENSRNOT00000079914 2 1 1 80 9 119948082 119948894 ATTTGCCAGTGCCATATCAG 59 119948937 119948955 CCCGTAGTTCCAGGATTCC 60 Novel Rattus norvegicus 81 AABR07072058.1 ENSRNOG00000051500 ENSRNOT00000089252 3 1 1 88 1 262458904 262458922 TCCGGATTTACTCCAGAGC 59 262432274 262458853 CTTCAGGAATCCATCCAGGA 59 Novel Rattus norvegicus 81 AABR07056624.1 ENSRNOG00000061113 ENSRNOT00000090732 3 1 1 83 7 33244820 33244839 CACTGTCATCCTGTAACCAC 58 33239232 33244774 TTAGGAGTGCAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07042780.1 ENSRNOG00000056140 ENSRNOT00000079386 1 1 1 93 19 8253056 8254507 GAAGTTCTTTCGTTCTTGGCT 59 8254562 8254580 ACAGCATGTGAGACTGGAG 59 Novel Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 1 1 1 71 19 8404493 8404512 TGGATGAGAATGGCATTCTG 58 8368610 8404459 AACTGTTTGGTGCTGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056678.1 ENSRNOG00000059437 ENSRNOT00000088749 1 1 1 80 7 35699169 35699189 CTTCCATCTATTCCTGTCACC 58 35698153 35699128 CTAGAACTTTCTGGTCCAGC 58 Novel Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545,ENSRNOT00000080819 3 2 2 83 17 19056492 19056511 GGAGAAGACAAGGCTACTGG 60 19056554 19056912 GGAGTTCTCCTTTCTTTCATGG 59 Novel Rattus norvegicus 81 AABR07056710.1 ENSRNOG00000055041 ENSRNOT00000092134 2 1 1 101 7 37647158 37647178 CTCCATTCCTGTACTCTTCAC 58 37647240 37647965 AGAAGACAGCAATCACTCAC 58 Novel Rattus norvegicus 81 AABR07027263.1 ENSRNOG00000051502 ENSRNOT00000081422 1 1 1 86 17 21834947 21863541 GTCTAGCAGATGTTTCGTTGG 59 21863589 21863607 TTACAAAGAAGCGTGCGTG 60 Novel Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 1 1 1 84 7 50073543 50073561 TTGGAAATGCCAGACTGTG 58 50072598 50073495 GACAGGGACATTCCCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043030.2 ENSRNOG00000058644 ENSRNOT00000087582 3 1 1 94 19 17930221 17930239 ATGTTAGTCTGAGAGGGCC 59 17930295 17939337 GTCGTTTGTCTCTTTGAAACC 58 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000078748 3 2 3 88 8 23534927 23560261 TCTACTCCGTCTCAGGGAC 60 23560313 23560331 TGTCCTCTGAAGATGGTGC 59 Novel Rattus norvegicus 81 AABR07043098.1 ENSRNOG00000054562 ENSRNOT00000087496 1 1 1 102 19 20567811 20567829 CTGTATCTCCTTTGGTGGG 57 20559740 20559758 GAATGTGGAGATTCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006957.1 ENSRNOG00000061600 ENSRNOT00000089277 3 1 1 80 1 273059546 273059564 TTCTCAGACAGGACTGGGA 60 273059607 273060296 ATCCTCTCCAAAGTGTGCTC 60 Novel Rattus norvegicus 81 AABR07027390.2 ENSRNOG00000056672 ENSRNOT00000092082 1 1 1 75 17 27842348 27842369 CACAGTGTTTCATAGAAACCTG 58 27849427 27849445 ATCTTCCTCCTTCCATCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057203.1 ENSRNOG00000059338 ENSRNOT00000086821 1 1 1 60 7 60282580 60282599 AAGAGAAGTGTGAGGGATCC 59 60283358 60283376 GACAGTGTCTTTGCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043108.1 ENSRNOG00000057049 ENSRNOT00000078652 1 1 1 91 19 21619379 21619397 TTCATTTCAAGAGGCAGGC 59 21619452 21623408 CTGTCCAGCCTACTAGAGG 58 Novel Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 2 1 1 72 1 274172655 274175035 AAAGGAATGCACATCCTGG 58 274172601 274172619 GCAAGTGATGAACAGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043133.1 ENSRNOG00000055707 ENSRNOT00000091454 3 1 1 80 19 23258357 23262863 TACCTCAGACTTCATGAATTGG 58 23258298 23258317 CAGGTAGCTAGGATATGGCA 59 Novel Rattus norvegicus 81 AABR07006978.2 ENSRNOG00000056528 ENSRNOT00000078517 2 1 1 88 1 274935172 274937387 CATCTTTGCATTGGCACAC 58 274937439 274937457 CATGACACTCTGGATCCCA 59 Novel Rattus norvegicus 81 AABR07043358.1 ENSRNOG00000055131 ENSRNOT00000089095 3 1 1 80 19 27747059 27747080 AACTTAGTGATGGAGAACACTG 58 27746367 27747019 GAGCAGGTTTCTAGAGAAGG 57 Novel Rattus norvegicus 81 AABR07057379.1 ENSRNOG00000061135 ENSRNOT00000091151 3 1 1 82 7 68622776 68624056 CTGACATTCAGGGTCATCG 58 68624100 68624120 TTGGATGGAATGTAGGATCAC 58 Novel Rattus norvegicus 81 AABR07057381.1 ENSRNOG00000053077 ENSRNOT00000079124 1 1 1 80 7 68838357 68838375 CCCTGATAGAGGTTCCCTC 58 68837107 68838313 GCCCTTGGTAAAGCTTCTC 59 Novel Rattus norvegicus 81 AABR07057381.1 ENSRNOG00000053077 ENSRNOT00000079124 3 1 1 98 7 68838374 68838393 TTACTGTTATTGCTCCTGCC 58 68837107 68838313 GCCCTTGGTAAAGCTTCTC 59 Novel Rattus norvegicus 81 AABR07057421.2 ENSRNOG00000054306 ENSRNOT00000085702 2 1 1 60 7 70271941 70271959 GAAGCCAAATTGGGTTCGA 59 70270165 70270186 ACAGTTCATCTCTGGCTATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC106702.1 ENSRNOG00000055842 ENSRNOT00000091855 2 1 1 60 19 32179513 32183463 CACAACAGAGGAAGATCAGC 59 32179472 32179491 TTTGTCGTGATGGTCAAGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07043642.1 ENSRNOG00000051454 ENSRNOT00000082783 2 1 1 60 19 33801214 33801234 AGGACCCTTCTATGAATAGGA 57 33800643 33801193 TCTTCTTTGTTGCTCCTTGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07057510.3 ENSRNOG00000061463 ENSRNOT00000082302 2 1 1 81 7 75228804 75248901 TTTCAAAGGAGGCTTTCTTGG 59 75248941 75248962 CCAAGTAGGTACTCAGACTGAG 59 Novel Rattus norvegicus 81 AABR07057586.1 ENSRNOG00000057489 ENSRNOT00000091480 2 1 1 82 7 79178451 79179276 AAACGTCCACGAAAGAGAC 58 79179321 79179340 TTGCTAGTCATGGAATAGCC 58 Novel Rattus norvegicus 81 AABR07057590.1 ENSRNOG00000061701 ENSRNOT00000082015 2 1 1 83 7 79455645 79456889 GAGCACATTGAAGAACGAGAG 59 79455582 79455602 TCTCAGAGCTCATGCTTAGTC 59 Novel Rattus norvegicus 81 AABR07028981.1 ENSRNOG00000053206 ENSRNOT00000090214 2 1 1 80 10 1565690 1566475 TCCATCTCAGAACAGGACC 58 1566519 1566537 CACAGAGAAGGTCAACAGG 58 Novel Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000077876 2 1 2 80 19 39502517 39502537 GACTTCATCTCATTGCTCAGC 60 39502576 39504267 GTGTAACTTCAGAGAATCTCGC 59 Novel Rattus norvegicus 81 AC130139.2 ENSRNOG00000058236 ENSRNOT00000083807 2 1 1 70 10 13356859 13356877 TCTACACAAACATCCTGGC 58 13358060 13358078 GACCAGAGTTAGATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC098959.1 ENSRNOG00000054105 ENSRNOT00000089322 3 1 1 87 10 14804468 14804487 CCACTGTTCAACTGCTTCTC 59 14802874 14804418 AGCCAGCTGGGAATTAGTG 60 Novel Rattus norvegicus 81 AABR07041019.1 ENSRNOG00000056360 ENSRNOT00000084894 1 1 1 87 X 117305266 117305284 ATCCAGTAAATGCTGCCTG 58 117305335 117323131 GACTTCGTTCTTTGTGGGT 58 Novel Rattus norvegicus 81 AABR07041247.3 ENSRNOG00000052259 ENSRNOT00000077131 2 1 1 87 X 124111397 124111934 GCCCAGACTGTACTTTCCT 59 124111328 124111346 GAATTCACAGCTGTGGGTC 59 Novel Rattus norvegicus 81 AABR07041361.1 ENSRNOG00000058857 ENSRNOT00000077982 2 1 1 62 X 127335792 127335812 GAGTATCCAAGGTATCCACCA 59 127334991 127335009 TTACACCTGCTTCAAGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041411.1 ENSRNOG00000059746 ENSRNOT00000077836 3 1 1 81 X 129335582 129335602 ACACAGGATTCAGTTCATCTG 58 129299627 129335540 GTTTGAACAGGAAATGCCTG 58 Novel Rattus norvegicus 81 AABR07029467.1 ENSRNOG00000053532 ENSRNOT00000077842 1 1 1 81 10 29612704 29612722 GCTTGTCAGCAGCATACAC 60 29612767 29623852 GATCTCTGACAGCTCCTGG 59 Novel Rattus norvegicus 81 AABR07070198.1 ENSRNOG00000058419 ENSRNOT00000090752 3 1 1 84 8 57462881 57462899 CAAATGGACAAAGGACCCT 58 57459889 57459912 GTGCTATCTATGAAGAATCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535,ENSRNOT00000086794 1 2 2 94 X 149273988 149274006 AAAGAATGAGGCAGAAGCG 59 149274236 149274254 GAGCCAGCACTTCTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC141334.2 ENSRNOG00000052941 ENSRNOT00000080830 1 1 1 80 10 36663511 36663530 CTAAATGGCACCACCTACAG 58 36661238 36663468 TCCAGGACTTGTTCTTCCC 59 Novel Rattus norvegicus 81 AABR07042465.1 ENSRNOG00000060122 ENSRNOT00000082615 1 1 1 89 X 157591201 157591429 CTTGGTCTTTCAGGTGCAC 59 157591130 157591148 TACCACATTCCCTTTCCGG 59 Novel Rattus norvegicus 81 AABR07007833.2 ENSRNOG00000056895 ENSRNOT00000079662 3 1 1 80 2 29784466 29784485 TCTGGAGCCAAGGAAATACC 60 29784528 29786584 CTGAGATGACCCTTCCAGG 59 Novel Rattus norvegicus 81 AABR07058578.2 ENSRNOG00000060017 ENSRNOT00000090002 1 1 1 80 7 125618322 125618340 AGCTCGGATGAACAAAGGA 59 125618099 125618278 TAGTAGGCTTTGACCACGT 58 Novel Rattus norvegicus 81 AABR07044414.1 ENSRNOG00000059927 ENSRNOT00000081316 1 1 1 99 20 5214633 5214651 GATCTCAGTCCTGAGGAGG 58 5214264 5214572 TGTGGTACATGTTGACAACTC 59 Novel Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 2 1 1 60 2 32310148 32310168 TCTCATCACCAGACATAAGAC 57 32310189 32310405 TTTCTTGGCTACAGATGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 2 1 1 184 20 6363937 6383411 AACAAAGGCCTCTGAGAGG 59 6383559 6383577 AAGAAACCCTGAAGTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059009.1 ENSRNOG00000054713 ENSRNOT00000090542 3 1 1 63 4 1116209 1116233 GAAGTTACCCGTTAGATGAATACTG 60 1084236 1084254 TCAAGCATCCAGATGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC132760.2 ENSRNOG00000061881 ENSRNOT00000088800 3 1 1 60 20 7693418 7693438 CAGAAAGAAGGAAGAGGAGAG 58 7691676 7691695 ACTCATTCTTCCTCCAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044570.1 ENSRNOG00000051612 ENSRNOT00000083597 3 1 1 84 20 10728056 10728163 AGTGGAGACAAGGTGATGC 60 10728207 10728229 GTGTTAATGAAGGTGATCACCAG 60 Novel Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723,ENSRNOT00000078360 3 2 2 74 17 62814782 62814801 CTCAGATGACTTTGGATGGT 57 62807954 62807972 CCTCTTCTCGACTTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 1 1 1 71 4 17666259 17668580 AAATGGAAAGACCTATGAGGG 58 17668613 17668631 GCGTACACGTAGAGATCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 3 1 1 73 4 17666259 17668580 AAATGGAAAGACCTATGAGGG 58 17668613 17668633 TAGCGTACACGTAGAGATCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059495.1 ENSRNOG00000058980 ENSRNOT00000077494 1 1 1 108 4 21957008 21957029 CACAGCAGTTTGTTTCATTCTC 59 21957095 21957222 GATCTTCCATTTCTCTTCTGGT 58 Novel Rattus norvegicus 81 AABR07044668.1 ENSRNOG00000055480 ENSRNOT00000086314 2 1 1 75 20 16531396 16531415 CACTCTTGATAGTCAGCTGG 58 16636031 16636049 ACAATGGTAGCTGGTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028356.1 ENSRNOG00000056515 ENSRNOT00000084781 2 1 1 80 17 66737936 66738116 GCACTAATTAAGGCTTCACAG 57 66738157 66738176 CGTAGCATTTACATCAGCAC 57 Novel Rattus norvegicus 81 AABR07044712.1 ENSRNOG00000058621 ENSRNOT00000091408 3 1 1 80 20 18108511 18108529 ATCTTCTGCAAGGCTTCCT 59 18095409 18108469 AGAAGGAATATGGTCAGCCTG 60 Novel Rattus norvegicus 81 AABR07044724.1 ENSRNOG00000056799 ENSRNOT00000079406 1 1 1 80 20 18437235 18437253 CTGGACAGAGGTTGGAGTC 59 18435358 18437193 AGTTACTGCCTGCACTTAGAG 60 Novel Rattus norvegicus 81 AABR07044724.1 ENSRNOG00000056799 ENSRNOT00000079406 3 1 1 130 20 18437285 18437303 CTAAGCCTTGCTCCCTAGG 59 18435358 18437193 AGTTACTGCCTGCACTTAGAG 60 Novel Rattus norvegicus 81 AABR07028469.1 ENSRNOG00000051695 ENSRNOT00000090314 3 1 1 84 17 71459699 71459717 GGACCGGATGATACTTGGG 60 71457046 71459651 CGGATGTTTCACCTTGCAG 60 Novel Rattus norvegicus 81 AABR07070802.1 ENSRNOG00000051520 ENSRNOT00000086693 1 1 1 105 8 84918627 84918645 CAAACTCACTTCTGCTGGG 59 84906550 84906569 TTTAGGAAGTGGTGTGAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008108.1 ENSRNOG00000053901 ENSRNOT00000090040 2 1 1 81 2 44012275 44012293 TGAGTGCTCTGTAGTTGGG 59 44012338 44013390 CTCTCAGGACCCATCTGAG 59 Novel Rattus norvegicus 81 AABR07028670.1 ENSRNOG00000053497 ENSRNOT00000084757 1 1 1 94 17 80061331 80063859 GCCCTGATGTTCAGATGAG 58 80063916 80063935 ACCAAAGAGAAGCATCAAGC 59 Novel Rattus norvegicus 81 AABR07059869.1 ENSRNOG00000057426 ENSRNOT00000089394 1 1 1 97 4 39145253 39147498 GGAGATCAGAAAGATAGACACC 58 39147554 39147574 TGCAGAGAATAGTAGCATACC 57 Novel Rattus norvegicus 81 AABR07071101.2 ENSRNOG00000057868 ENSRNOT00000084793 3 1 1 80 8 100141690 100141708 AGACAGGGTCAAATCTGCT 59 100141750 100143304 CAGAATTCAACCCAAGGACTC 59 Novel Rattus norvegicus 81 AABR07044837.1 ENSRNOG00000052735 ENSRNOT00000091412 2 1 1 80 20 23045663 23045682 TGTCACTATGGTCCCTTCTG 59 23045725 23046630 TTGACTCAGGAGGTCTGAG 58 Novel Rattus norvegicus 81 AABR07072704.1 ENSRNOG00000055170 ENSRNOT00000087761 3 1 1 89 2 44989160 44990833 CGACTTCTTCAGGTTGTGC 59 44990885 44990904 TTATAGCCGCCTTACCATCC 60 Novel Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 1 1 1 60 4 44646973 44646992 GATGCTCATGGCTCAATGTG 60 44639619 44646953 ATATACCTGTCTTTCACACTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028795.2 ENSRNOG00000061547 ENSRNOT00000091727 2 1 1 82 17 86637738 86640217 GATGGCTGAATTCCTTGACC 59 86637675 86637693 ATAGGACGTGTGAAACCGA 59 Novel Rattus norvegicus 81 AABR07028834.1 ENSRNOG00000060526 ENSRNOT00000088554 2 1 1 85 17 87861882 87861900 CTCTGGATGGCTTGAGTCC 60 87860591 87860612 TGCAATGCAGGTAAATTCAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC116288.1 ENSRNOG00000060822 ENSRNOT00000084692 1 1 1 80 4 48932462 48932484 GTGAAGTCTGGATTCACATACTG 59 48928941 48932428 GTGGTGATTTAATCTGTATCACCTC 60 Novel Rattus norvegicus 81 AABR07008287.1 ENSRNOG00000056600 ENSRNOT00000079713 3 1 1 92 2 51600255 51613843 ATCTTCAAGCTGCAGATCAG 58 51600182 51600201 TTATCCACTGTCCCACAGAG 59 Novel Rattus norvegicus 81 AABR07060062.1 ENSRNOG00000055894 ENSRNOT00000082083 2 1 1 60 4 52015168 52015188 TACATTCCACCTTGTGTTCTC 58 52017661 52017680 ATGAAGATACTCAAGGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008341.1 ENSRNOG00000054353 ENSRNOT00000091750 3 1 1 103 2 53510846 53510865 TGGAGAATGACAGCTTTGAC 58 53510237 53510255 ACAAGATGCTCCCATTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045086.1 ENSRNOG00000057977 ENSRNOT00000078257 1 1 1 60 20 33744758 33771992 CACCCATAGGTCCATTCTG 57 33772015 33772034 GGTTACAAATTGAGCACCCT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 1 2 2 80 20 45683292 45684506 CTCCCACGTATCCAGATACG 60 45684548 45684567 TGGCGATTTCAGAAAGATGC 59 Novel Rattus norvegicus 81 AABR07045399.2 ENSRNOG00000054538 ENSRNOT00000082658 3 1 1 93 20 46164557 46164576 CTAATACCAGGGTTGTGGTC 58 46164632 46166342 CTGAAGAACCTCCACAGAG 57 Novel Rattus norvegicus 81 AC098284.1 ENSRNOG00000059808 ENSRNOT00000088947 2 1 1 80 8 121095859 121124377 AGAGTACAGTTCTCCCTCAG 58 121095798 121095816 TGAATATTCCACGGTGAGC 58 Novel Rattus norvegicus 81 AABR07045416.1 ENSRNOG00000060212 ENSRNOT00000078817 1 1 1 83 20 46936887 46936905 ATGAGGACAAGAAGCTGGA 58 46936952 46937415 CCTATGGAGCTAGCAAACG 58 Novel Rattus norvegicus 81 AABR07060560.3 ENSRNOG00000056372 ENSRNOT00000085281 2 1 1 80 4 80674808 80674826 TGCTGTTCTCAGCATTTGC 60 80674867 80676769 GTAAACAGAAGAGCCACTACTC 59 Novel Rattus norvegicus 81 AABR07043863.1 ENSRNOG00000057385 ENSRNOT00000090619 3 1 1 113 19 44739667 44739685 TTTGGTGCCATCTGAATGG 58 44738656 44739591 TTTCTGTTTCAGTGGCTAGC 59 Novel Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 1 1 1 84 2 69763242 69803543 GGTGTGCAAATGTACTGAGC 60 69763177 69763195 CAGACAATCCTCTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 2 1 1 85 2 69763243 69803544 AGGTGTGCAAATGTACTGAG 58 69763177 69763195 CAGACAATCCTCTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 2 1 1 88 8 124166779 124166974 TTTGGTCCTGCATCCTCAG 60 124167026 124167044 AGATCACTTACCCAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043928.2 ENSRNOG00000058892 ENSRNOT00000079103 1 1 1 80 19 48211991 48212010 CTCTCAAGGAGGGACTTCTC 59 48211740 48211952 CATAGTCATTCAACATCCCATCC 59 Novel Rattus norvegicus 81 AABR07044075.1 ENSRNOG00000054967 ENSRNOT00000085215 2 1 1 101 19 56367186 56368456 GTTAACTGACAGGCTTGCT 58 56368519 56368539 GTAGCTGGATGATACTCAGAG 57 Novel Rattus norvegicus 81 AABR07058788.2 ENSRNOG00000056137 ENSRNOT00000078882 2 1 1 81 7 137535128 137535652 CATTCACTTGAACGATACAACC 58 137535693 137535712 CTCTTCCTCCTGGACTAAGG 59 Novel Rattus norvegicus 81 AABR07044139.1 ENSRNOG00000057718 ENSRNOT00000086567 1 1 1 151 19 59408072 59408091 GGAGGCAACATAAATGTGGA 58 59408205 59408864 AATCTCACCGGAAGTCCTG 59 Novel Rattus norvegicus 81 AABR07058789.1 ENSRNOG00000057856 ENSRNOT00000078569 3 1 1 105 7 137590652 137593039 CAGTTCCTCATGTTAAGAATGG 57 137590568 137590586 CCTGTGGAAACCATCAGTC 58 Novel Rattus norvegicus 81 AABR07044148.1 ENSRNOG00000061610 ENSRNOT00000083636 2 1 1 86 19 59656399 59660409 CTCCTAAGGACAAGAACTTTCC 59 59660456 59660474 CCTTTACCAAAGGTGTCGG 59 Novel Rattus norvegicus 81 AABR07058815.1 ENSRNOG00000055003 ENSRNOT00000077822 3 1 1 80 7 138414427 138414445 CGAACTTCGCTCAGATTCC 59 138413475 138414386 TTTCCTCTCCTTATCCCTTGAG 59 Novel Rattus norvegicus 81 AABR07007146.1 ENSRNOG00000055064 ENSRNOT00000088930 1 1 1 80 1 282723245 282723263 TCAGGAGAGGCACAAAGAG 59 282723307 282724009 AGTGTCTGCAGAATCCCTC 59 Novel Rattus norvegicus 81 AABR07010040.3 ENSRNOG00000060371 ENSRNOT00000092076 3 1 1 83 2 121772782 121774059 ATGTATAAGCAGGACCTCCA 58 121772718 121772736 AAAGTAGTCTTCGGTGCAC 58 Novel Rattus norvegicus 81 AABR07010777.1 ENSRNOG00000052971 ENSRNOT00000087518 3 1 1 80 2 151312873 151314331 GGTTTGCAGATTACTAGCTGG 59 151312813 151312833 ACTCTTGAAATGCTTAGTGGG 58 Novel Rattus norvegicus 81 AABR07010868.1 ENSRNOG00000052016 ENSRNOT00000078455 2 1 1 80 2 154030670 154033214 AATGGCTGAGAAAGAGTCAG 58 154030609 154030628 ATAATGCAGCCTACAATCCA 57 Novel Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 1 1 1 60 2 154904933 154906801 AAGGTGGAGTTCTGTATGAGG 59 154906820 154906841 CACATCTTCCTCAATCATTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011682.1 ENSRNOG00000058126 ENSRNOT00000080884 1 1 1 89 2 165931234 165931252 TAACACAATGGTACGGTCC 57 165917593 165931182 GAGGAAAGATTTCGAGTCCC 58 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 3 1 1 62 2 196554735 196554754 CTTCGTTGTCCTTGTGTTCG 60 196554484 196554710 GAGCATTCTTTGTAGGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012774.1 ENSRNOG00000052078 ENSRNOT00000079825 3 1 1 80 2 207845646 207845899 AAGATCTCAGCTCCCTTCC 59 207845941 207845961 TAGAGGTTGTCTGGTGTTCAG 60 Novel Rattus norvegicus 81 AABR07012774.2 ENSRNOG00000055255 ENSRNOT00000079542 2 1 1 80 2 207870618 207870636 AAGAACAGCAACAGCAGTG 59 207870678 207871614 CTGGGATGACATATCAGGGAG 60 Novel Rattus norvegicus 81 AABR07012884.1 ENSRNOG00000052614 ENSRNOT00000081168 2 1 1 80 2 213687108 213687638 CATGACAGCCACAGATCCT 60 213687679 213687700 GTCTTTCTTGATGACGTTTGCT 60 Novel Rattus norvegicus 81 AABR07013073.2 ENSRNOG00000056395 ENSRNOT00000084403 2 1 1 121 2 221510444 221512166 TCCAGAGGAAGCAATCTGC 60 221512251 221512269 TTTCTCCTTGCTCTCCACC 59 Novel Rattus norvegicus 81 AABR07013123.1 ENSRNOG00000051918 ENSRNOT00000085477 2 1 1 61 2 223607700 223607718 TCCTCTCCCTTCTTCACTC 58 223609741 223609762 CTGTGGTTCTCTAGAAAGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013410.1 ENSRNOG00000052248 ENSRNOT00000080258 2 1 1 86 2 236007074 236007092 AAAGCTGACTTGCCAACAC 59 236011056 236011074 TTCTTCTTGGTGCTGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 2 2 2 80 2 254033891 254034509 TCTTGATCAGGAACTGACTACC 59 254034550 254034568 CTTAACTCTCGCTTCGCCT 60 Novel Rattus norvegicus 81 AABR07013784.1 ENSRNOG00000061028 ENSRNOT00000080709 3 1 1 81 2 256567933 256568659 CTGGAATAATTGCAAGACCCA 59 256568701 256568720 CTTCATCCTCCCTTTGAACC 58 Novel Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 1 2 2 88 X 22399684 22399828 CTACGGAGACTAGAGGTCC 58 22399614 22399632 TATCGTCTGGAGAGGATGC 58 Novel Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 1 1 1 60 18 25364208 25364226 ATTCACAGGAGTCTGTGGA 58 25364163 25364182 CTCCTTGAAAGGATTTCCCT 57 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899 2 1 4 98 3 140225765 140227416 ATACGAGGCAAGGTCACTG 60 140230567 140230585 AACTCAGGTGTGAGATGGG 59 Novel Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 2 1 2 65 2 52609142 52609161 CTCACCAAACTTCCTCAGGA 59 52591295 52591313 TTTGGTGAGGGTTGGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063544.1 ENSRNOG00000005811 ENSRNOT00000007637 1 1 1 85 6 34554737 34554756 GCTTAGATAAGAAGGTCGGG 58 34554669 34554689 CTCGATAGTGAGGATTGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016640.1 ENSRNOG00000037522 ENSRNOT00000056827 1 1 1 159 14 108915926 108915946 GCATCTTACCTTCATATGCAG 57 108916066 108916086 CGGGCTTTCTCTTTAATATGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052408 ENSRNOT00000086506 1 1 1 60 4 52291573 52291591 GTGTCAGTAGGTGGCAGAG 60 52291531 52291550 TGTTCTTTGGTTGGAACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043169.1 ENSRNOG00000024754 ENSRNOT00000031820 2 1 1 65 19 25180866 25180884 GATAAGCAAAGGTCAGCGG 59 25180815 25180833 CTCTTGGAGAAACTGAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061241 ENSRNOT00000083063 1 1 1 60 4 114638413 114638431 CCACAATGTAGGAAGCAGG 58 114638371 114638390 GCCAGCACAAATATAGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059787 ENSRNOT00000077907 3 1 1 60 4 145403287 145403306 GCTGGAATACAAGCTTGCTC 60 145403246 145403266 CTGGAGATACTGCAGTACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051 3 1 2 81 15 36897697 36897715 ATTCCAGTTCTGCCTTCCT 59 36897758 36898033 GTTAGTTGGGATGAATCCAGG 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000071395 3 1 2 91 5 77315217 77315930 TTTGTTGAGCATGACGGAG 59 77315144 77315165 CCGTTCTTGACATTAACAAGGT 59 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 3 1 1 71 2 221659319 221659337 TAAGGTGTTCCTTGGAGCC 59 221659372 221659391 TTGAGTTCTCGAGTCTCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054447 ENSRNOT00000084930 2 1 1 60 1 76281391 76281413 GGAACGATACAGAGAAGATTAGC 59 76281433 76281451 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564 2 1 2 82 4 29529857 29529875 CTCAGCTTTGTGGATACGC 59 29529918 29532890 GATCCCATTTGTAAAGATTGGC 58 Novel Rattus norvegicus 81 AABR07024498.1 ENSRNOG00000052713 ENSRNOT00000077284 1 1 1 80 16 1953221 1953240 TTTCCACAGCTTTCCAAAGC 60 1953283 1953303 ATCAGCCTCAGGTGTACTG 59 Novel Rattus norvegicus 81 AABR07003935.10 ENSRNOG00000049262 ENSRNOT00000072539 3 1 1 60 1 121225513 121225531 TGATCAGTCAGGCTACTGG 59 121225471 121225490 GGCTTTGGTTATACCCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.1 ENSRNOG00000046092 ENSRNOT00000073893 1 1 1 60 1 121210584 121210604 CTGCTGGTTATATTCCAGGAC 58 121210544 121210563 ATTTAACAGTCGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044463 ENSRNOT00000069730 1 1 1 60 1 166886682 166886700 TACCACCATGAACATGCCT 59 166886640 166886661 CCAAATTCTAACTAGGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012039.1 ENSRNOG00000061763 ENSRNOT00000081080 2 1 1 85 2 183250823 183250889 GCGTTTATAGAAGATGATTGGG 57 183250759 183250777 CTTTCTCCACTGTCCTCAC 58 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304 1 1 2 119 2 208383458 208383476 CTGACAACAGAGAAGACCG 58 208385092 208392610 ATCAGAATGGACATTCGGG 57 Novel Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 1 1 1 81 10 35058564 35058582 TGTGTCACTCCCAGATTGG 59 35058500 35058518 TAGAGCTACGTTCACAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 3 1 1 82 20 18046144 18046162 GTGTTTGCGTCTTTCATCC 58 18046340 18046358 TTCTGAGCTAGGAAGACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 2 1 2 80 4 113982393 113983033 TATCCTCATCAACAAGGAGAC 57 113983074 113983093 CTGATACTGAGGGTGAAAGG 57 Novel Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000071700 3 1 4 108 9 81645200 81645218 AGTACAAAGACGACCTGGG 59 81645290 81645678 TTGAGGTAGCCTAGGAGGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057277 ENSRNOT00000085623 3 1 1 61 15 57318119 57318137 GAGAAGATTAGCATGGCCC 58 57318076 57318095 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061141 ENSRNOT00000083813 3 1 1 60 5 125187554 125187574 GGTTAGAATAGGAGCTTGCTC 58 125187596 125187614 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057745 ENSRNOT00000086074 3 1 1 69 X 118542498 118542519 TCCTTGTAACCAATTAGGTCTG 58 118542450 118542468 TGCAGGATAGTTTCTCGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054366 ENSRNOT00000082041 2 1 1 60 13 97260089 97260112 GATACAGAAGAGATTAGCATGACC 59 97260052 97260070 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057432 ENSRNOT00000088028 3 1 1 60 18 25401878 25401896 CCTAGAAGCATTGCAGGTG 59 25401836 25401855 CTCTGTTATGCCGTCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067401.1 ENSRNOG00000052359 ENSRNOT00000078676 1 1 1 109 9 43086369 43086387 AACTTGTTGCTGCACAGAG 59 43086460 43086478 CTCCCTGACTTCATGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 3 1 1 76 4 157026430 157026448 AGAAGAGGAGGTTGCACAG 59 157008608 157008626 ACCACTGAGCCATTTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 2 1 1 65 1 169279847 169279865 CAATGCCTGCTTGACTCAG 59 169279799 169279817 AACAGGATGCCAGACTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000088581 3 1 6 111 10 74871647 74877552 TGGATGACAAGGAGTACGTG 60 74877626 74878029 CCCAGACCAGATTCTCCTG 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076482 1 1 4 82 1 134885496 134887384 CTCCGGTATCTTAGAAGATGGT 59 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 3 1 1 91 7 13055381 13055399 CTCGTTTCTTTGGAGGCTC 59 13055454 13055474 CCACTCCAAATTGTAAACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 3 1 1 63 2 35185902 35185920 TTCCTTCTGTTCCTGAGCA 59 35185950 35185968 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 3 1 1 72 14 44876772 44876790 CCATCACCTCCCATAATCG 58 44872722 44872743 TGGTGGGATATAATTTACTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 3 1 1 60 5 17123487 17123507 TAGATCTTGCTTACATCGCAG 58 17113843 17113863 CTGTTGGAATTCAACAACCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 1 1 1 60 4 84936155 84936176 CTGAAGGCATCTTCTCATTCTC 59 84935856 84935874 TGCTAAGGTCTGGTTTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 3 1 1 60 4 84936153 84936174 GAAGGCATCTTCTCATTCTCAG 59 84935854 84935874 TCTGCTAAGGTCTGGTTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 1 1 1 61 1 12400903 12400921 CCAAGGAAGGGAAAGGGAG 60 12403159 12403183 GTCAAACTTTATCTTCGATCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000087589 3 1 2 80 14 61664890 61668120 TTGGAAGAAAGGTGGTTGTG 59 61668161 61668181 CAGGGTCAATAACAAACACCA 59 Novel Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 2 1 1 60 5 36435066 36435089 CTTCTACTGATCTTCAGCAATCTC 59 36434014 36434035 CCATTTGACTAAGACGTACTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 3 1 1 62 10 93238199 93238219 GTGAAATGATGGAGAATGTGG 57 93239922 93239943 CACCTATTTGATCAGCATTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 2 1 1 66 15 12756855 12756875 CGTGATAAGGTCAATGAGGAG 58 12792288 12792306 TCATGGAGCTGTTGTACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000082897 1 1 3 131 20 56198203 56198436 GCAGCTACGTCAAGAAAGG 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 1 1 1 64 4 176075823 176075841 ATGTCGGTGACATCCACAG 60 176076543 176076562 CCTCTTCTCTTGCTTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 1 1 1 60 4 182328933 182328952 TTCTGGGAGAAATTCCCAGG 59 182329549 182329567 AGCTGTATGCAGTCTTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 2 1 1 114 6 10767024 10767042 ACTTCTTCCTCATCAGGGC 59 10765954 10765974 CCTTGGTTTGTTGAATACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 3 2 2 84 5 142406974 142406992 CCATACAGACATCACCGTG 58 142405990 142406926 CAGAATGTGCTGGTCTGTG 59 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 3 1 1 60 5 143851544 143851564 AGAAGACATGATCTTGGAGAC 57 143852402 143852423 TTCTCTTCTTTACTGGTAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 1 1 1 62 6 32307983 32308007 CTCCTGGAAGTGAATTCTATTTACG 60 32307331 32307349 AACAGCAGTGTAAGACCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 2 1 1 60 15 50309983 50310003 CAGCCTTCTATCACATTGGAG 59 50301616 50301637 TCTCATAGGTGCAACATAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 3 2 2 80 3 4734836 4735903 TCATGAGGAAGGTGACCAC 59 4735947 4735965 TGGTCCTCTTCCTTACTCG 58 Novel Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 2 1 1 74 18 80294331 80294349 GACTCTGGACTTCTACCCT 57 80300885 80300903 GTGAGTGACTTCTTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 2 1 1 68 11 64195366 64195385 ACTACCGAAGGACCATTGTG 60 64225617 64225635 CTTACTGTGCATGCTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000091301 3 1 2 85 6 128999057 129000092 GCTGGAAGACTGTGTTCTC 58 128998990 128999009 CCTGGTAATGGATGACATGC 59 Novel Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 2 1 1 60 13 95702823 95702841 TTCCAGGCTGTTAAAGGTC 57 95698439 95698457 CGCCATTTGAAGACAAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 3 1 1 60 13 95702825 95702843 GGTTCCAGGCTGTTAAAGG 59 95698441 95698463 CCATTTGAAGACAAGGTAGACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776,ENSRNOT00000078681 2 2 2 81 6 143749809 143757035 TCCCTGCATATGTCTTGTCC 60 143749747 143749765 GTCAGGCTTAGGGTCTTGG 60 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 3 1 1 63 12 28150435 28150453 CTCTCACAGAGGGATTGCA 59 28145651 28145669 TGCCATCTCTGTTCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 3 1 2 80 X 35983908 35984119 AGAAGACCATATCTACGCCTC 59 35983848 35983866 CAATGCTGATGTCCTGTCC 59 Novel Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 3 1 1 78 X 77957182 77957200 CTCCAGCCCTTCATCTCTG 60 77956499 77956518 ATTACCAAGAGGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 2 2 2 81 8 4890736 4896592 TAGGTATTTGGCTGGTCTGC 60 4890674 4890692 TCTCCATAGGCTAGCAGCT 60 Novel Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 2 1 1 69 17 18866591 18866609 TGAACTACATCTGAGGGCC 59 18866923 18866941 ACTTTGGGAGAACTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 2 1 1 60 19 20774572 20774590 ATTGTGTCAAACGCTCAGC 60 20757896 20757915 GTCTGATTCAGACAAAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 1 1 1 64 17 28002999 28003017 GAACTTCCAAGGCCAACTC 59 28000104 28000125 GGCAGCATTTCTTAGTATACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 3 1 1 60 8 40036724 40036746 GACACTGAGAAGCAAAGATATGG 60 40034211 40034231 TAGCATATGCGTTGATTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 3 1 1 60 19 36173617 36173635 ATCGCCTCCTTTATGTGAC 57 36174952 36174970 GGATTTGGCCTGAAGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 1 1 1 60 7 83991191 83991210 GACCTGAAAGTTCTGAATGC 57 83989707 83989725 CCTCCATGTCTGGAAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 3 1 1 66 X 108894043 108894061 GAGTGGCTGAATTTGCAGG 60 108894916 108894934 GTCTCCAGAGATGAATGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 2 1 1 60 8 81635480 81635501 TCAGAAATTACTAGATGCCCTG 58 81490666 81490685 CAGCAACTTGTCGGTTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 3 1 1 60 8 128962590 128962610 CTGAAGAGCTTTGAGAATCAC 57 128964261 128964282 TCTTTCTTGCTGTAAGGAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 1 1 1 77 2 82771679 82771700 GGTAATTGTTGTGACACATGAG 58 82772711 82772730 GAATTCTTACACTGGAGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 1 1 1 84 2 102164297 102164315 TTAACTGCTGAGCCATCTC 57 102154154 102154173 TCAATAAGCCAGATCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 3 1 1 107 2 126934588 126934609 GCTGATGAACGATGGAATACAC 60 126933490 126933508 GCCACTGTTCTTCTCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 3 1 1 60 14 8895670 8895689 TGAATATGGAGCTCACTGGA 58 8894453 8894474 CTCTATCCTGAAGCTCTAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 2 1 1 106 2 225143206 225143224 CAGTCTGAGCCCTTTCCTC 60 225144017 225144035 TTCCACTCACCTCTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-co2 ENSRNOG00000030371 ENSRNOT00000043693 1 1 1 60 MT 7355 7376 GCTTTGACTCCTACATAATCCC 59 7394 7415 TCTAATAGACGAAGTTCACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-co2 ENSRNOG00000030371 ENSRNOT00000043693 3 1 1 60 MT 7551 7570 TACAGTGACATCAAACCGAC 58 7593 7611 TGAGCCGCAAATTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomgnt1 ENSRNOG00000023455 ENSRNOT00000035312 2 1 1 80 5 135013368 135015292 CATGAATGGCTACTTTCATGAGG 60 135015331 135015350 TCTACATTCCTGAGCTGGAC 59 NA Rattus norvegicus 81 AABR07013086.1 ENSRNOG00000023365 ENSRNOT00000036228 3 1 1 112 2 222793431 222793449 TCTTCCACCTTTGATGCTG 58 222793553 222793827 TGAACTTGTTCCTTGGAGG 57 NA Rattus norvegicus 81 Rs1 ENSRNOG00000030434 ENSRNOT00000040912 1 1 1 80 X 35753310 35761805 AGACTGTATTCCAGAATGCC 57 35753249 35753268 GAGCAAGTGATCTGATCTGG 58 NA Rattus norvegicus 81 Rxfp3 ENSRNOG00000023126 ENSRNOT00000031693 2 1 1 60 2 61007262 61007285 GTGTAAGATCGTATCTATGGTGAC 59 61007225 61007243 AGTGAGAAAGAAGACGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnma5 ENSRNOG00000058423 ENSRNOT00000085250 3 1 1 60 X 153038643 153038665 TGGGAATAAAGAGGACTGTAAGG 60 153038605 153038626 AGGTTTCTGAGAAGATTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813,ENSRNOT00000077883 1 2 2 80 2 212547366 212547385 GGACGAAACTTAGCTTCAGG 59 212547425 212552006 TACTGGTTTAGGTACACATGGA 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330,ENSRNOT00000091593 2 2 2 82 8 108788462 108790615 AGTCTTCGCCAAATGATTTCTC 59 108788401 108788420 GACAGTCTCTTTCAGCTGGA 60 NA Rattus norvegicus 81 Srsf11 ENSRNOG00000029592 ENSRNOT00000044236 3 1 1 81 2 264845314 264845336 GAAATAGAGGAAGCCATGAAGAG 59 264843827 264845275 TTTCTTCCTTCTTGTCTGGCT 60 NA Rattus norvegicus 81 Ybx1 ENSRNOG00000023786 ENSRNOT00000015875 2 1 1 80 5 138335747 138335765 TGTAAGGAACGGATACGGT 58 138325077 138327197 TTCTTCTTTATGGCCGTCTG 58 NA Rattus norvegicus 81 Ybx1 ENSRNOG00000023786 ENSRNOT00000015875 3 1 1 80 5 138335748 138335767 AATGTAAGGAACGGATACGG 58 138325079 138327198 CTTCTTTATGGCCGTCTGG 58 NA Rattus norvegicus 81 Slc35g2 ENSRNOG00000015370 ENSRNOT00000020610 3 1 1 120 8 108880764 108880782 CTGGAGGACTGGAACAGAG 59 108855494 108855513 TTCACCATGACTGTATTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Psmb5 ENSRNOG00000013386 ENSRNOT00000018005 3 1 1 80 15 33262462 33262480 ATCAGTACAAAGGCATGGG 58 33259360 33262418 CTACATAGTAGAGGCCCGG 59 NA Rattus norvegicus 81 Txlng ENSRNOG00000004971 ENSRNOT00000006843 3 1 1 80 X 33599752 33599771 TACTGAGGAGGCTATTGAGG 58 33599811 33618593 GTACCAATTTCAAACTTCTCCG 58 NA Rattus norvegicus 81 Il10rb ENSRNOG00000028638 ENSRNOT00000061345 2 1 1 80 11 31577358 31581510 CCTCAAGGAGTTTCTGAGTC 58 31581553 31581571 AACACTTCGGTTTCGTCAG 58 NA Rattus norvegicus 81 Rcan1 ENSRNOG00000001979 ENSRNOT00000002715 2 1 1 108 11 32544254 32545578 ACTTTGCCCAGACTTTACAC 59 32544165 32544183 ACTTGTTTCCAGCCAACAG 59 NA Rattus norvegicus 81 Ing1 ENSRNOG00000014520 ENSRNOT00000019454 3 1 1 60 16 83277964 83277982 CGTGAGTCAGATGGTGGAG 60 83277922 83277941 CTCTACATGACTGTCCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc1b ENSRNOG00000010701 ENSRNOT00000014270 3 1 1 80 2 40049440 40049459 CAGATTACTATGGCCACCTG 58 40049501 40062612 GCAGCAAACCTAATACACTG 57 NA Rattus norvegicus 81 Mir34b ENSRNOG00000035561 ENSRNOT00000053684 3 1 1 62 8 55492595 55492616 TTGTAGGCAGTGTAATTAGCTG 59 55492554 55492572 GATGGCAGTGGAGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a8 ENSRNOG00000000512 ENSRNOT00000059264 1 1 1 80 20 5905521 5905540 GAGAGTGAACAAGTGCATCC 59 5902568 5905478 AAGCCAAGAATCAGGAGCA 59 NA Rattus norvegicus 81 Hspa8 ENSRNOG00000032585 ENSRNOT00000041306 3 1 1 60 5 99032299 99032319 GTCAACCATTTCATTGCTGAG 58 99032259 99032279 TCTTGTTCTCACTGATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem125 ENSRNOG00000045872 ENSRNOT00000072816 1 1 1 60 5 137372535 137372553 GGCAGGGTCAGGATAAAGG 60 137372575 137372595 TCACAGGGACATGATAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem125 ENSRNOG00000045872 ENSRNOT00000072816 2 1 1 60 5 137372677 137372695 TTGCATGTTATCTCCCACC 58 137372719 137372737 CCCTTCCCTAAGACTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047219.1 ENSRNOG00000048760 ENSRNOT00000075052 2 1 1 79 5 24694097 24694116 AAAGAAGACAGCAATGGCTG 59 24694159 24694177 AGACCTTGACAGGCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1543 ENSRNOG00000050294 ENSRNOT00000051112 2 1 1 60 11 43394656 43394678 CAGAGGAATAACAGATCGTACAG 59 43394697 43394716 GATGAGGAAGAACACCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843,ENSRNOT00000087293,ENSRNOT00000005328 3 4 5 88 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443986 26444274 ACCATAGGAAGGATACGGC 59 NA Rattus norvegicus 81 Pou2f3 ENSRNOG00000009118 ENSRNOT00000012170 3 1 1 80 8 47422768 47424792 GGAGAAGCGATTTCAAGATAACC 60 47422710 47422729 TCCTTCTCCATGGACAACTG 60 NA Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 3 2 2 94 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777334 32777352 ACAGAAGAGGTGATGGACC 59 NA Rattus norvegicus 81 Olr1239 ENSRNOG00000049421 ENSRNOT00000071100 1 1 1 60 8 42301474 42301496 GGACTCAGTAAATGTCTCATTGG 59 42301516 42301534 AGGCTGCTCTGTTAATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748,ENSRNOT00000090705 1 2 2 80 2 248770323 248771170 GACTTGTCCAATGATGTTTGTG 59 248770264 248770282 ATTGGAAATGGGCTTCCAG 58 NA Rattus norvegicus 81 Mir383 ENSRNOG00000035589 ENSRNOT00000053712 1 1 1 63 16 57519682 57519700 ATCAGAAGGTGACTGTGGC 60 57519727 57519745 TCTTTCTGACCAGGCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp300 ENSRNOG00000046469 ENSRNOT00000072087 3 1 1 85 X 908565 909170 AATTGCACAGAAGATGGGC 59 909217 909237 ACGGATATAGTCTGTTCCAGG 59 NA Rattus norvegicus 81 Chaf1b ENSRNOG00000001692 ENSRNOT00000002299 1 1 1 80 11 34111795 34111813 CGATGACAGCATGAAGTCG 59 34111856 34113808 ATACATCCAGCTGGAGTGAG 59 NA Rattus norvegicus 81 Olr482 ENSRNOG00000049721 ENSRNOT00000071782 3 1 1 60 3 73493074 73493094 TTTCTACTGTGATGACATGCC 59 73493034 73493053 CTGTTTGGAGTGAGTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563302 ENSRNOG00000038917 ENSRNOT00000059490 2 1 1 80 15 39598471 39598489 GCCAGAAACAAAGACTGGG 59 39597277 39598429 CAGGTTCCTTGAATAAAGGCA 59 NA Rattus norvegicus 81 Olr51 ENSRNOG00000015424 ENSRNOT00000020678 2 1 1 60 1 168005930 168005951 ATTCTCTACTACAGGGTTTGAC 57 168005970 168005990 TCGGATGATCAGTACATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam2 ENSRNOG00000017027 ENSRNOT00000066478 1 1 1 80 15 42750838 42750858 GAGAAATTACACGTGCAAGTC 58 42747957 42750796 GTAGGTCACCTGTGTTTCG 58 NA Rattus norvegicus 81 LOC102555453 ENSRNOG00000028993 ENSRNOT00000042736 3 1 1 60 X 1345842 1345861 TGAGATTGTCAACATTGCCC 59 1345801 1345819 TCCAGAAAGTTCTCTGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb ENSRNOG00000058566 ENSRNOT00000089411 1 1 1 105 20 5185422 5185445 GTGGATTCTATACTAGATCCAGGG 60 5185509 5185881 TCATCCAAGCGCCTATGAG 60 NA Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528 3 1 2 82 1 21853412 21853430 TGTGAAGCTGACCTAGAGG 58 21852969 21852987 TCAAACTTGACAGGCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Mx1 ENSRNOG00000001959 ENSRNOT00000039876 1 1 1 80 11 37902972 37902991 GACTCTGATTGACCTTCCTG 58 37902656 37902931 AGTCTCTTGATCTTGTGTTCG 58 NA Rattus norvegicus 81 Nlrp4f ENSRNOG00000015527 ENSRNOT00000041128 2 1 1 83 1 74181096 74181116 ACAACCTTCAAAGTTCTCCAG 59 74174927 74181051 TATATTTGCGTGTGCAGCA 58 NA Rattus norvegicus 81 AABR07041987.1 ENSRNOG00000049579 ENSRNOT00000071783 2 1 1 227 X 144999343 144999362 TAATCGTGTGGAAACAACCG 59 144999713 144999735 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Olr186 ENSRNOG00000049981 ENSRNOT00000050034 2 1 1 60 1 169919809 169919828 GTACAGCATGATCCTCACCA 60 169919848 169919869 CCTGACTATGATGACTACACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1246 ENSRNOG00000049805 ENSRNOT00000073541 3 1 1 60 8 42339180 42339199 TATGTACCTAAAGCCCTCCT 57 42339220 42339240 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Piga ENSRNOG00000003554 ENSRNOT00000044103 2 1 1 80 X 31798978 31798996 ACATGTATCGCTCGGAGAG 59 31798187 31798936 CAGTGTGGACTTGAATCTTGG 59 NA InUTR Rattus norvegicus 81 Scube3 ENSRNOG00000000500 ENSRNOT00000000593 2 1 1 80 20 7742941 7742960 TGGATCAACTTCAAGACCAG 58 7743001 7743120 CTCATAGTCCTCATCGTAGGT 58 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007,ENSRNOT00000059868 3 2 2 80 8 47322478 47322499 AGAAAGATGACAATGGATTCGG 59 47321656 47322439 CTGCTCCATCTTCTTTGACAG 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165,ENSRNOT00000067331 1 2 2 80 5 27994537 27994555 TTGGTCCTGAATTGCAGTG 58 27990842 27994495 CTTGCAATCAAGGTAGAGCTC 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681,ENSRNOT00000088131 2 2 2 80 2 170243451 170247013 GCTGTTAACGCTTCCAGAG 59 170243389 170243407 AATTTCTCTTGCCCACCAC 58 NA Rattus norvegicus 81 E2f3 ENSRNOG00000029273 ENSRNOT00000050261 2 1 1 81 17 36400345 36400363 CTACGACATCACCAACGTG 59 36400405 36404696 GTAACATAAGATCCACTGGACG 59 NA Rattus norvegicus 81 Id4 ENSRNOG00000016099 ENSRNOT00000021550 3 1 1 269 17 16694812 16694830 CTACATCCTGGACCTGCAG 60 16693617 16693635 TTAATTTCTGCTCTGGCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ppapdc1a ENSRNOG00000020424 ENSRNOT00000027681 1 1 1 82 1 202481009 202490763 CCTCATGTTTGCAATTTCCT 57 202490808 202490826 TTTCAGTCTTGTCTGTCCG 57 NA Rattus norvegicus 81 Paqr9 ENSRNOG00000032374 ENSRNOT00000049729 3 1 1 60 8 103338535 103338554 CAGCTCTTCCACATCTTCAC 59 103338576 103338595 CCTCTTCCACGTAGTACACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth2 ENSRNOG00000021051 ENSRNOT00000028588 2 1 1 80 1 101799649 101799806 TCTTCCAGTCCACAGACAC 59 101799587 101799606 TGACATTGGGATTGTGAAGG 58 NA Rattus norvegicus 81 LOC100911047 ENSRNOG00000047630 ENSRNOT00000074398 1 1 1 80 1 147006882 147006902 GATCATGGCATCATCTTTCCT 58 147006944 147007798 AGTTTCTGCCTCTGTTCAC 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 3 3 3 83 1 178388931 178390108 CTGATTGATTCCTTAGAATGGATGG 60 178390146 178390167 GTATGTATTAGGTCTGTCGCCT 60 NA Rattus norvegicus 81 Irf4 ENSRNOG00000061070 ENSRNOT00000088931 2 1 1 83 17 34892390 34892408 ATTCCAGGTGACTCTGTGC 60 34890262 34892343 AGAGGTTCCACATGAGCTG 59 NA Rattus norvegicus 81 Olr486 ENSRNOG00000029884 ENSRNOT00000052306 2 1 1 60 3 73561098 73561117 TGGCTACAATGTCATCAGTC 58 73561057 73561076 ACACAACAGAGGTAACAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627,ENSRNOT00000005061 2 2 2 80 X 35693561 35699107 CTGTCTAATAGAAGCCAATCCAC 59 35699144 35699165 TAAGTTCTGAATGTCCTTGCTG 59 NA Rattus norvegicus 81 Kcnk7 ENSRNOG00000020784 ENSRNOT00000028197 3 1 1 87 1 221059904 221059922 CTAGGAGACTTGCTGCCTG 60 221059971 221060230 GGAGCAAGTAACCAAGAAGTG 59 NA Rattus norvegicus 81 Rn60_17_0793.1 ENSRNOG00000051034 ENSRNOT00000076151 3 1 1 60 17 77568375 77568395 CATCTGATGTCCAAAGAGGAG 58 77568417 77568435 GAACTCATCCTAGGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss48 ENSRNOG00000024208 ENSRNOT00000046286 3 1 1 81 2 185298186 185298889 AAATCAGGAAGGTCATTACCC 58 185298125 185298144 GTACAGTTGTTCACATGCCT 59 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942,ENSRNOT00000024018 3 2 2 81 1 219177029 219177050 CATGGTTTACTTCCTCAACCAC 60 219177092 219177363 ATAGCTCTTAGTGCCGCAG 60 NA Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 2 2 2 80 2 46983764 46983784 ACCAATCAGTGGAGGATAGTG 59 46983823 46987451 CCACATCTTTCAAGGTATCCTG 59 NA Rattus norvegicus 81 Paip2l1 ENSRNOG00000048424 ENSRNOT00000071314 1 1 1 60 1 193700442 193700462 ATGAATGGTTTATTCCAGCCC 59 193700402 193700421 AACTGGTCTTGGATTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 She ENSRNOG00000020797 ENSRNOT00000028225 2 1 1 81 2 189188475 189188493 CAAAGAAGCTGGCTACCTG 59 189188536 189190634 ACACCCTTGACTAGTCTTGAG 59 NA Rattus norvegicus 81 Arl13b ENSRNOG00000047194 ENSRNOT00000074108 3 1 1 80 7 1167510 1167528 GACACTTGTGATGGTCGGA 60 1156465 1167466 ACGTCTTCAGGATGCTCTC 59 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 1 2 2 83 1 89103815 89103833 AAACGCTGCATTCGTACAG 59 89099800 89103769 GAAGATTCGGAAGTCATCGG 59 NA Rattus norvegicus 81 Capsl ENSRNOG00000054277 ENSRNOT00000089609 3 1 1 81 2 58744579 58747564 CTATGATAAAGATGGGTTGGTGAC 59 58747601 58747622 CACATCTGTATCAATGGATGCA 59 NA Rattus norvegicus 81 LOC682846 ENSRNOG00000019280 ENSRNOT00000026074 1 1 1 80 1 66212204 66212327 CAGACTCATCAGGGAGTAGAC 59 66212144 66212166 GAAGTATTGAAAGGAAGCCTCTG 60 NA Rattus norvegicus 81 Tgif2lx2 ENSRNOG00000029850 ENSRNOT00000045685 1 1 1 60 X 90588548 90588568 TGCCAATATGCCAAGAATCTC 59 90588589 90588608 TTCTGGCCAAGATAAGACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sepw1 ENSRNOG00000013548 ENSRNOT00000018559 1 1 1 102 1 77533617 77533753 AAGCCCAAGTATCTCCAGC 60 77533352 77533370 CTTCAAAGAACCCGGTGAC 59 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 1 2 2 74 1 222244594 222245105 AAAGAGCTACACCCTGACC 59 222244538 222244556 ATACGCCTCACTCAGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Csprs ENSRNOG00000017256 ENSRNOT00000023184 3 1 1 60 9 92565793 92565813 TGGATTCTGCTAAGTACAGGA 58 92565833 92565853 GCATTCTTGAGTATAACCGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst3 ENSRNOG00000015781 ENSRNOT00000021335 2 1 1 81 2 227840857 227847710 TTTATCACACGGGAACCGA 59 227840794 227840813 TGAGGAAACCACCAGAACTC 60 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027,ENSRNOT00000074298 1 2 2 80 1 212003569 212003590 GGAGTGTGAATTAGATGCTCTG 59 212002927 212003529 ATAATCAGCTGCTCCTCGAC 60 NA Rattus norvegicus 81 Tmem190 ENSRNOG00000042528 ENSRNOT00000066383 1 1 1 81 1 72631083 72631793 TCTACCCATGGAGTTGTGAG 59 72631021 72631039 CAGAGGTTGGGATTCTCGA 59 NA Rattus norvegicus 81 AABR07072463.1 ENSRNOG00000021843 ENSRNOT00000032631 3 1 1 66 15 41800256 41800274 CAAAGCTACATGGCCAAGG 59 41800303 41800351 GAGCCTGGTTTAAACCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Sec14l2 ENSRNOG00000004672 ENSRNOT00000006542 1 1 1 80 14 84342010 84342032 CCTAACCAGAGATACAATTCCCA 60 84337046 84341971 CCGTAGGACATAGATGCCTG 60 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 1 2 2 80 3 6494070 6494653 AATTCCTCCAATCCGGCTC 60 6494696 6494715 ATTCTTGATGGTCTCCTCGG 59 NA Rattus norvegicus 81 Psd2 ENSRNOG00000019177 ENSRNOT00000026112 1 1 1 80 18 28800888 28804257 GACAGAGCACTCAGAACCT 59 28804301 28804319 GAAGTGGGTAAGGACTCGT 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000080931,ENSRNOT00000008936 2 2 2 80 4 17354382 17354400 TCACTGAGAAGGCATTGGA 59 17352831 17354338 CCATGTCATTCACGCACAG 60 NA Rattus norvegicus 81 Rn60_X_0604.2 ENSRNOG00000060566 ENSRNOT00000042809 2 1 1 60 X 59762118 59762138 GTAAGATACTTCCGAACGTCC 58 59762078 59762099 GCTTCAGACCAAATGATTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044495.1 ENSRNOG00000048871 ENSRNOT00000074908 3 1 1 91 20 8183027 8183045 GAATTCCTTGCCATGCCTG 60 8182943 8182977 GTCTGAATACCTAAATCATGCTCG 60 NA Rattus norvegicus 81 Ddx41 ENSRNOG00000012771 ENSRNOT00000018114 1 1 1 80 17 9633807 9633916 CATCCCTACCATTCTGTCTG 58 9633959 9633977 GGCAGTGTGAATACCAGAG 58 NA Rattus norvegicus 81 Rn60_17_0410.2 ENSRNOG00000051206 ENSRNOT00000077042 3 1 1 81 17 39106292 39108783 CAAAGAGCCATCATCTATTGGTG 60 39108824 39108842 TCGCTGTTTACCTGTCCAG 60 NA Rattus norvegicus 81 Apoc4 ENSRNOG00000018405 ENSRNOT00000024832 3 1 1 97 1 80596246 80599418 GCTTTGTAGCATCCATGCC 60 80596167 80596185 CACCATCTCCATCACCCTG 60 NA Rattus norvegicus 81 Tdh ENSRNOG00000011342 ENSRNOT00000015353 2 1 1 80 15 46671309 46671329 TCTGTGTTCAAAGACCTAGGA 59 46670000 46671271 ACCGGTAATAATAGTACTCTCCC 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000073521 1 1 5 80 1 87708359 87708379 TAGGAAGATTCATACTGGCGA 59 87861212 87910944 CGAAGAAGGTGTGACTTCTG 59 NA Rattus norvegicus 81 Mir27b ENSRNOG00000035576 ENSRNOT00000053699 1 1 1 60 17 823496 823515 TGAACAGTGATTGGTTTCCG 59 823538 823556 ACCTTCTCTTCAGGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nbn ENSRNOG00000008580 ENSRNOT00000012377 2 1 1 80 5 29651316 29653588 AATTCAAGAAGGCTACGTGTC 59 29653625 29653648 GAGCATGGTGACCTATTAAATCTG 60 NA Rattus norvegicus 81 Nbn ENSRNOG00000008580 ENSRNOT00000012377 3 1 1 80 5 29648396 29651185 CGTGAAGTATCTAATACTGACGAG 59 29651222 29651242 TGACCTAAATTCAGTCAGCAG 58 NA Rattus norvegicus 81 Vbp1 ENSRNOG00000050401 ENSRNOT00000072973 1 1 1 63 1 148428373 148428391 CAAGTTCATGGAGCTCAGC 59 148427982 148428000 GATCTCAGGGATCTGCGAC 60 NA DesignNoJunction Rattus norvegicus 81 Pnma2 ENSRNOG00000009815 ENSRNOT00000013001 2 1 1 80 15 43586281 43586579 CACATAAACAGGAGTCCTTGC 59 43586621 43586639 AATCAGTGGGTAGGTGGTG 59 NA InUTR Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 2 2 2 83 9 63564835 63564853 AATGCCTTAAAGGAGCTGC 59 63558402 63564791 GGATGAAATCATACTCTGGGAG 58 NA Rattus norvegicus 81 Adipor2 ENSRNOG00000007990 ENSRNOT00000010556 3 1 1 80 4 151421876 151425373 TTTGTTTGTAAGGTGTGGGA 58 151421815 151421835 GAAGTCATTGTCCTTAAGCCA 58 NA Rattus norvegicus 81 LOC100359550 ENSRNOG00000037978 ENSRNOT00000001672 3 1 1 61 12 38340236 38340254 AGAGATGCATCGAGTTCCT 58 38340193 38340212 GCTATTTCTACCCTTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss1 ENSRNOG00000032156 ENSRNOT00000040403 3 1 1 104 4 70778233 70778643 AGCAATGGTGTGAACAACC 59 70778711 70778729 CATGCTGCTGGTGATTTCC 60 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 2 2 2 80 6 26356247 26357946 ATGTTGCAGAGGTTCTCTG 58 26356185 26356203 CAGTGGTTGAGGAAAGTGG 58 NA Rattus norvegicus 81 Fam98b ENSRNOG00000005366 ENSRNOT00000034950 2 1 1 80 3 108976600 108977227 ATGGTCGCTTAAAGATTCCTC 58 108977265 108977287 GTGAAAGACCATAGGTAACTCTG 59 NA Rattus norvegicus 81 LOC100910595 ENSRNOG00000050717 ENSRNOT00000074413 2 1 1 60 8 43054952 43054973 TTATTGATCTCTGCCATTCCAC 59 43054913 43054931 TCTGCCACAAAGTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Commd2 ENSRNOG00000043386 ENSRNOT00000022778 1 1 1 80 2 147778086 147778104 GTAGCGACACTATCCAGCA 59 147777535 147778044 CCAGTTCAGAAATCATGAGCT 58 NA Rattus norvegicus 81 Clptm1l ENSRNOG00000016923 ENSRNOT00000023211 1 1 1 80 1 32292306 32292325 AAGACAGTTCACTACCTCCC 59 32290061 32292265 GGACCGATTTATCACCATCAG 59 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000028810 ENSRNOT00000044840 1 1 1 80 15 35185048 35185069 CTTCCATCACTACTCTGAGACC 60 35184609 35185007 CCAGAGTCACCCTTGTACG 60 NA Rattus norvegicus 81 Olr1233 ENSRNOG00000051518 ENSRNOT00000081759 2 1 1 60 4 1448570 1448590 TTTCTACGGATTTGGTCTGCT 60 1448610 1448630 CTGAACTACAGACTCTGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684107 ENSRNOG00000047649 ENSRNOT00000074999 2 1 1 80 17 38927629 38928238 ACTCAGCAAGGTTGATCCTC 60 38928278 38928299 TCAGTTGTCTTCAAGGATTCCA 60 NA Rattus norvegicus 81 Ippk ENSRNOG00000015631 ENSRNOT00000021022 1 1 1 80 17 15628903 15628921 TCTCAAATGGTGTCACCCA 59 15623665 15628859 TTCCAGTCGCTACCTTGAG 59 NA Rattus norvegicus 81 Rn60_X_0608.1 ENSRNOG00000051276 ENSRNOT00000076410 3 1 1 60 X 60136221 60136239 GCAAGAACCACAGTATGGA 58 60136262 60136281 TCCCATATCTCTTGACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurod6 ENSRNOG00000026055 ENSRNOT00000016182 3 1 1 142 4 85915050 85915068 GATCTAGAGGCTCCAGGAG 58 85913632 85913650 GACTCGTCAAACGGTAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Aox1 ENSRNOG00000015354 ENSRNOT00000068633 2 1 1 80 9 64957292 64958257 AGACTTTCTGTAGAGCTTCTGG 60 64958294 64958316 CCGATCCATTTATTCCTTGATCC 60 NA Rattus norvegicus 81 Olr736 ENSRNOG00000052729 ENSRNOT00000080981 3 1 1 60 3 79018396 79018415 TGCTTTGTGCTATTTCTGCT 59 79018355 79018374 CCACCATAAGAAGATTCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Them6 ENSRNOG00000005929 ENSRNOT00000007773 3 1 1 60 7 115956852 115956870 GTAGTACAGCACTTGTGCA 58 115958530 115958548 GCTTCAAGTCTTCTGGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr330 ENSRNOG00000029943 ENSRNOT00000051381 3 1 1 60 1 228628623 228628641 CAGCCATGACCTATGACAG 58 228628660 228628683 ATGATTGATGAGTAGAGAAGAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0626.1 ENSRNOG00000049958 ENSRNOT00000072090 2 1 1 60 X 61920221 61920242 GATGAGAATGAGGAGATGACTG 58 61920263 61920281 AACAAGGAGAAAGCACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 2 2 2 80 6 22006612 22006633 TTTGGATCAGTTCTGTTGAAGG 59 22002626 22006572 CCAATAGACAGACCCACCAG 60 NA Rattus norvegicus 81 Bivm ENSRNOG00000022894 ENSRNOT00000033133 1 1 1 80 9 50899576 50899594 ACTTCGTGTGGTATCTCCT 58 50899637 50900144 AATAGGTGGGAGATTCCCAG 59 NA Rattus norvegicus 81 Vom2r28 ENSRNOG00000002641 ENSRNOT00000038169 2 1 1 80 1 69579354 69579374 CACATGATGGACACTTTCACC 60 69579416 69579915 TTCTGACAGGGTTTCCCAC 60 NA Rattus norvegicus 81 Lmo3 ENSRNOG00000047450 ENSRNOT00000072450 1 1 1 81 4 172951763 172992343 CAGAGACTACCTGAGGCTG 59 172992388 172992406 CATCACCATCTCAAAGGCG 59 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862,ENSRNOT00000003428 1 2 2 80 13 35641265 35641396 GAATACAGAGGTCAGACACCA 59 35641205 35641225 ATCAACGCCATACATTTCCAG 59 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 3 2 2 89 17 39511105 39511882 AGATACATGTAGAGCTCTACCA 58 39512731 39512749 GAGCAGTCTTGTCTTTCCT 57 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 1 2 2 80 9 85481070 85482461 CATCAAAGATGAGGACCGC 59 85481008 85481028 GCAATGTCCATGGACATATGG 60 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000041390 3 1 3 73 3 156662154 156662172 GAGAACACCGGCATAAGGA 60 156662206 156662925 GCTCCTGTTGCTATGTTTAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000085354,ENSRNOT00000041390,ENSRNOT00000086260 1 3 3 60 3 156662141 156662162 AAACACAAAGATCGAGAACACC 60 156662182 156662201 CCCGGTCCTTATCCTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396,ENSRNOT00000091934 1 2 2 80 4 145259428 145259447 AACTGGATGGTGATGATGTG 58 145259490 145262064 CTCGGAATGGGACAAACTG 59 NA Rattus norvegicus 81 Zfp644 ENSRNOG00000002112 ENSRNOT00000002882 3 1 1 80 14 4182268 4182288 CCATTAAACGAAGACAGTCCG 59 4182327 4197695 CTGCTTACAATCTATGGCTGAG 59 NA Rattus norvegicus 81 Cherp ENSRNOG00000012323 ENSRNOT00000017424 2 1 1 82 16 19075380 19075398 CGGCTACTTTGATGACTCC 58 19075444 19075617 CATTGATGAGAGTCGCCTG 58 NA Rattus norvegicus 81 LOC100361143 ENSRNOG00000059302 ENSRNOT00000072162 2 1 1 60 2 102919452 102919475 CAAACAGACTCTGAAGATGATCAG 60 102919415 102919434 GTTGTTAGCGAGGATAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r17 ENSRNOG00000012235 ENSRNOT00000016414 2 1 1 82 4 86286026 86291233 TTGTTGCAGGTTTGACTCTC 59 86291278 86291296 AGCTAGCTTGTCACCATCC 60 NA Rattus norvegicus 81 Dand5 ENSRNOG00000033368 ENSRNOT00000044133 2 1 1 83 19 25930835 25935725 TTGTTCAGGTGATCTCCAGG 60 25930771 25930790 TGTAGAAGGAGGAACAGTGG 59 NA Rattus norvegicus 81 Rn60_X_0616.4 ENSRNOG00000051236 ENSRNOT00000076945 1 1 1 60 X 60969919 60969939 CTGTTGGTGCTATAATTGCTG 58 60969961 60969979 TCTTCAGTGGTTGTCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgef1b ENSRNOG00000002345 ENSRNOT00000003207 2 1 1 80 14 12005056 12005519 GGGACGGTGATAAGAACCA 59 12005562 12005581 AAGGAAACGTTTCTGTCCAC 59 NA Rattus norvegicus 81 Lrrc69 ENSRNOG00000006498 ENSRNOT00000008656 1 1 1 80 5 28285970 28290503 CCAGAAATTGGCAGATTACAG 57 28285910 28285930 ACAGATCTCTTTGGGAATCAC 58 NA Rattus norvegicus 81 Arhgap31 ENSRNOG00000003088 ENSRNOT00000004138 3 1 1 80 11 64677893 64689990 TCTATGAGAAATTCACGGAAGC 59 64690030 64690049 GCTCCTGGATAACATTCTGG 58 NA Rattus norvegicus 81 Scd2 ENSRNOG00000046005 ENSRNOT00000075397 1 1 1 80 1 264063367 264063385 AGCCACAGGACTTACAAGG 59 264063429 264065129 CACATCGTTCTGGAATGCC 59 NA Rattus norvegicus 81 Unc119 ENSRNOG00000011060 ENSRNOT00000015091 3 1 1 86 10 65611371 65611389 ACTTTGGCTTCTGCATTCC 59 65611438 65611718 TCTCACTGATTAGCTCCTCG 59 NA Rattus norvegicus 81 Xdh ENSRNOG00000007081 ENSRNOT00000009634 2 1 1 80 6 25182784 25182802 CCATCTCTGACCTCAACCC 60 25181338 25182742 GAACAGTTCTCCTGGTACCTC 60 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875,ENSRNOT00000076661,ENSRNOT00000087153 1 3 4 80 1 216379998 216381562 GCCTCACTCATCCAGACTG 60 216381604 216381624 CTTCCGGACATAGATCTTCCA 59 NA Rattus norvegicus 81 AABR07017624.1 ENSRNOG00000048808 ENSRNOT00000060297 1 1 1 94 15 29369282 29369460 GCTGAACTGTGTAAGCAGAG 59 29369207 29369225 TGTAGGTGCAGACGATAGC 59 NA Rattus norvegicus 81 Olr727 ENSRNOG00000060319 ENSRNOT00000048921 3 1 1 60 3 78862829 78862848 GTTGTCTTGTTCTTTGTCCC 57 78862870 78862889 TGTGGAAGGAGATCATTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 1 2 2 80 12 2095646 2095665 TATTGCGAGTACCTTCGTCC 60 2095706 2096449 ACCCACATCATAGATCTGGTC 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882,ENSRNOT00000018843 1 2 2 80 18 32069707 32071374 GGAGAAACGTCACTTTGGA 58 32069645 32069663 GGAACCATGGTGATTTGCT 58 NA Rattus norvegicus 81 Msln ENSRNOG00000019445 ENSRNOT00000026395 3 1 1 80 10 15122214 15122311 GCATCCCTAAGGATGTTATCAC 59 15122155 15122173 TGACAGTCCACTTAGACCC 58 NA Rattus norvegicus 81 Hexim1 ENSRNOG00000003203 ENSRNOT00000004272 3 1 1 60 10 91201552 91201570 CAGAACATCAACACCAGCC 59 91201594 91201612 TCCTCATGGACAACAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo48 ENSRNOG00000023026 ENSRNOT00000032965 2 1 1 80 14 100135590 100135609 CTGCTTGAGCATAAGAGCTG 59 100135651 100136112 AGGAGTATTACCCTCCAGGT 59 NA Rattus norvegicus 81 Sirt5 ENSRNOG00000017866 ENSRNOT00000024066 2 1 1 91 17 23999410 24003586 CTGGAAATCCACGGAACCT 60 24003639 24003659 AATAAGGCTGGACAAATCGGA 60 NA Rattus norvegicus 81 LOC100911438 ENSRNOG00000048285 ENSRNOT00000071709 1 1 1 60 8 42002482 42002502 TCCTGCAGTAACACCTATGTC 60 42002524 42002542 TGATACCTGTACCCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053879.1 ENSRNOG00000027574 ENSRNOT00000030148 2 1 1 100 3 132053453 132053471 CCTGCAACTTCAACAGCAG 60 132053533 132053577 CACCCTGTTGCAGTAAATGAG 60 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 2 1 2 114 8 91099564 91099582 CCATGTCGGAGGAACAGAG 60 91099660 91160218 CCTCCACAGTATCGATCCC 59 NA DesignNoJunction Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 2 2 2 80 1 171974084 171974102 GCTAATTCGCCACATCACC 59 171972978 171974043 ATATCCTCTTCTGTCTGGTTGG 59 NA Rattus norvegicus 81 Lhx8 ENSRNOG00000028348 ENSRNOT00000009370 3 1 1 80 2 260589932 260589951 GACGTCAATCATCCAAAGCC 60 260584374 260589891 AAACTGTGCTTGCATAACCTG 60 NA Rattus norvegicus 81 Rn60_5_0437.1 ENSRNOG00000033953 ENSRNOT00000047860 2 1 1 60 5 38981558 38981579 AATGTGATTCCTACTGACACCA 60 38981599 38981618 CCACTAGTTGTTCCATAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl25 ENSRNOG00000028531 ENSRNOT00000037059 3 1 1 81 12 2434575 2434688 GTGCTGTGATATTCTACTTCCG 59 2434515 2434534 ATCTTCACAGCCCTCTTCAC 60 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709,ENSRNOT00000075193 1 2 2 80 6 60727321 60731221 GCCTGCTGAACTTCTATAAGAC 59 60731258 60731280 GATGCAGATCATAGAGTTTGTGG 60 NA Rattus norvegicus 81 S100g ENSRNOG00000004222 ENSRNOT00000005622 1 1 1 83 X 33443681 33445513 TCCTGAAGGCTTCAAGTACTC 60 33445552 33445576 CGAATTCTTCATAGCTAACTTCTCC 60 NA Rattus norvegicus 81 S100g ENSRNOG00000004222 ENSRNOT00000005622 3 1 1 86 X 33443612 33443630 AAGAAGGCGATCCAAACCA 60 33443679 33445510 TACTTGAAGCCTTCAGGAGG 59 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234,ENSRNOT00000065211 3 2 2 107 2 187282124 187282143 GAAGGGAAACTGGTCATCGA 60 187282448 187282467 CTCCTTGGGACGTTTAGGG 60 NA Rattus norvegicus 81 Atp8a2 ENSRNOG00000008053 ENSRNOT00000011451 3 1 1 80 15 40227019 40305851 GGATTCTTTAGATGCAACAAGG 58 40226960 40226978 ACATCATTCTCTTTGCCCA 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 3 1 4 135 6 52663176 52667419 TTGCGTTCTGCTCATTTGG 60 52667517 52668874 CTTCTGTGCTTCCACATCTG 59 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 3 1 1 99 4 157057950 157057970 CTTTGGAGTACATGACAAAGG 57 157058031 157058130 GTAAAGCCTGACAGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 3 2 2 81 10 109857058 109857076 TCCTAACAATGCCAAGCTG 58 109857118 109858461 CTGTAATGCAATTCGAACTGTG 59 NA Rattus norvegicus 81 Nrsn1 ENSRNOG00000017444 ENSRNOT00000023519 2 1 1 86 17 41806432 41806452 GCCTCTATCTGGGAGTATGAG 59 41806500 41815376 GATGAGTCCGACCTTCCAG 60 NA Rattus norvegicus 81 LOC100360679 ENSRNOG00000033152 ENSRNOT00000046010 2 1 1 60 10 104521979 104521998 GATCACCATCATGCAGAACC 59 104521938 104521958 CTGTCTGTTCAAGAACCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 2 2 3 80 5 48281272 48282414 CTTCATGGAGCATAAGGACAG 59 48282455 48282474 CTAGAGAACCTATGGCTCCC 59 NA Rattus norvegicus 81 Fam131b ENSRNOG00000017149 ENSRNOT00000059447 2 1 1 80 4 71710408 71710427 CAGATCAACATGGACAGCAC 59 71710077 71710367 GAAATCTGTTCGTGTTTGCTC 59 NA Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 1 2 2 80 20 6754364 6754382 GTACACCACCTGCATTGTC 59 6751168 6754320 TGGATGTACAGCTTGTCGG 60 NA Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 2 2 2 80 20 6758376 6758584 TCAACTTCTCAGGCATTGC 59 6758314 6758332 ACTGGTAGATGTCGTAGCG 59 NA Rattus norvegicus 81 Gimap9 ENSRNOG00000024569 ENSRNOT00000032802 3 1 1 80 4 78310419 78311573 CCTGCAGAAGATATTCAGGTC 58 78311614 78311633 TTCCCTACCAGAATGATCCT 58 NA InUTR Rattus norvegicus 81 Rab2a ENSRNOG00000005963 ENSRNOT00000008522 3 1 1 99 5 21653340 21663958 CACAATTGGTGTAGAGTTTGGT 59 21670853 21670871 AGAACGAAAGGACTCCTGC 60 NA Rattus norvegicus 81 Syce1 ENSRNOG00000024073 ENSRNOT00000033074 3 1 1 80 1 213526594 213527154 GTGGACTCATTACACGAAGAG 59 213526303 213526321 CAGCTGCATAATCCTCAGG 58 NA Rattus norvegicus 81 Olr922 ENSRNOG00000047837 ENSRNOT00000043396 3 1 1 60 11 23062623 23062643 ATTAAACCATCTGCAAGGGAG 58 23062583 23062604 AAGTATACAGCAAAGCTACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggta1l1 ENSRNOG00000042373 ENSRNOT00000060013 3 1 1 84 3 14570041 14571574 TACTCCAGAACAAAGGATCAC 58 14563946 14563964 TAAACCAAGACTCGAGCTG 57 NA Rattus norvegicus 81 Olr1557 ENSRNOG00000046622 ENSRNOT00000060874 1 1 1 60 11 43617398 43617417 TTATCATCCACAGTGACACC 57 43617357 43617375 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911801 ENSRNOG00000046963 ENSRNOT00000071964 3 1 1 60 8 42010506 42010524 TCTTCAGGTAAGGGTTGGT 58 42010547 42010566 TAGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff4 ENSRNOG00000006965 ENSRNOT00000009440 2 1 1 80 10 38758060 38759744 CTCACAGTACTTTGCCTGAG 58 38759787 38759805 GTACTTCAGAGCGTTCTCC 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512,ENSRNOT00000087291 1 2 2 80 17 42921196 42921930 TATTCAACAGGACTCAGACTAAGG 60 42921139 42921158 ACTGCAAGTCTTTGAGTCCA 60 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600,ENSRNOT00000084258 2 2 2 86 6 83426396 83426414 CTTGCAGTTAGCTAGCTGC 59 83426464 83431871 GTCAGCAAAGCATTTGGCT 60 NA Rattus norvegicus 81 Knop1 ENSRNOG00000048270 ENSRNOT00000075020 1 1 1 81 1 188373472 188373490 AATTCGAAGCTGACTTCCG 58 188371247 188373430 TGACCATTACTGGTCTATTAGC 58 NA Rattus norvegicus 81 Igsf8 ENSRNOG00000007604 ENSRNOT00000010028 2 1 1 89 13 90693482 90696895 TAATACTTGGAGCCAGGTGC 60 90696947 90696965 AGGAGATAGAGACAGCGGT 60 NA Rattus norvegicus 81 LOC100912610 ENSRNOG00000033415 ENSRNOT00000044186 1 1 1 114 5 77999068 77999411 GATGTGGACAAGCTCAATGG 59 77998973 77998991 CAAGACATCGATGTGCTGC 60 NA Rattus norvegicus 81 Vom2r46 ENSRNOG00000030104 ENSRNOT00000031015 2 1 1 83 2 154762874 154762893 GCAATTATTGGAGCAGGAGG 59 154761605 154762829 ATAGCCCACCTGAAGTACAC 59 NA Rattus norvegicus 81 Ptprt ENSRNOG00000032656 ENSRNOT00000044466 3 1 1 80 3 157572921 157572940 GTTGTGGACATCTTCAACTG 57 157569634 157572879 AAACACGTACTGTTCCTCTG 58 NA Rattus norvegicus 81 Olr218 ENSRNOG00000048022 ENSRNOT00000049686 2 1 1 60 1 170927378 170927399 CTGTCCTGTGTAGATACCTCTC 59 170927339 170927357 GGAATGTCACTCCTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam46d ENSRNOG00000023637 ENSRNOT00000031200 3 1 1 60 X 78992451 78992474 CCTAGTTATTATGTAGCATCTGGG 59 78992493 78992511 GCACTGTATGACATGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911376 ENSRNOG00000029142 ENSRNOT00000042829 2 1 1 60 1 171059160 171059179 TGGTCTCTGTACTCTACGCT 60 171059119 171059137 CGCAAGCAGTAGATGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd7 ENSRNOG00000006689 ENSRNOT00000008901 1 1 1 80 5 21917558 21922818 CCTAATCAATGGTGCTGAAGAG 59 21922859 21922877 TGGAGCTGGAAATCTGGAG 59 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630,ENSRNOT00000007726 2 2 2 80 19 25152821 25152944 GCAACCTTACATAAAGGAGGTG 59 25152762 25152782 TGTAGCTCCATTTCCTCTACC 59 NA Rattus norvegicus 81 Itgal ENSRNOG00000017980 ENSRNOT00000024404 3 1 1 80 1 198777422 198780790 TAGCGCTCTACAAGGTTGG 60 198780834 198780852 GGCTTCCATTTGGAACACC 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000004010,ENSRNOT00000083688 1 3 3 80 10 35354057 35356333 CAAGATGTGTACTTGGTTATGGAG 60 35356370 35356390 CATTCTTTCATGGTCCAGCTC 59 NA Rattus norvegicus 81 LOC100910173 ENSRNOG00000003918 ENSRNOT00000005292 2 1 1 80 10 104169492 104172528 GAGCCCAAGATCTACAGCA 59 104169430 104169450 GCCTTTGTAGAAGACGAAAGG 59 NA Rattus norvegicus 81 Rab38 ENSRNOG00000016769 ENSRNOT00000022538 1 1 1 114 1 152072858 152072876 AACTTCTCCTCCCACTACC 58 152072954 152107803 TTTCTTGACCTGCGATGTC 58 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 2 2 2 80 1 73656628 73659483 CATGTGTCAGAAGCAGCTC 59 73656438 73656456 GTAATCCTGGTGCTGTGAG 58 NA Rattus norvegicus 81 Hpse ENSRNOG00000002188 ENSRNOT00000002983 3 1 1 80 14 10559027 10559065 GAGATCACATGACAATATGAGGG 59 10560018 10560038 GAGTCAATCACTTCTCCACCA 60 NA Rattus norvegicus 81 AC120727.2 ENSRNOG00000051858 ENSRNOT00000072444 2 1 1 60 X 1601084 1601102 TACGAGATGAGGTCTGTGG 58 1601123 1601144 ACCCATTCTCCTGAATAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911867 ENSRNOG00000008190 ENSRNOT00000011633 2 1 1 80 3 2217385 2217405 CTAATGTTCACCATCAGAGCC 59 2217442 2220335 CTTCCTCATGATCTCATAGAAGTG 59 NA Rattus norvegicus 81 LOC100911867 ENSRNOG00000008190 ENSRNOT00000011633 3 1 1 80 3 2217445 2220336 TTCTATGAGATCATGAGGAAGC 58 2220377 2220395 CACAAAGGACGACATCCTC 58 NA Rattus norvegicus 81 Cpn1 ENSRNOG00000013439 ENSRNOT00000018221 2 1 1 80 1 263744265 263747313 TAAGCAAGGGAATGCAAGAC 59 263744204 263744223 GAAACTTGTTGCAACTCAGC 59 NA Rattus norvegicus 81 Capn13 ENSRNOG00000032375 ENSRNOT00000047853 1 1 1 80 6 24604104 24607993 GTGTTCAAGGTGGATTCCC 59 24601734 24601752 GGCAGCATCTCTGAATTGG 59 NA Rattus norvegicus 81 Nhlrc3 ENSRNOG00000010843 ENSRNOT00000014562 1 1 1 80 2 142684846 142685417 GTTAGTTTACGTAGCTCAAAGAGG 60 142684789 142684809 CAGGCTCGTAGGAAATATCCA 60 NA Rattus norvegicus 81 Phyhip ENSRNOG00000049071 ENSRNOT00000074912 3 1 1 60 15 52156876 52156895 CATCACAAGGAGTACTTCCA 57 52158273 52158293 GGTAAGGCTGTAGTACATTCC 58 NA DesignNoJunction Rattus norvegicus 81 S100a5 ENSRNOG00000011748 ENSRNOT00000015712 3 1 1 80 2 190004030 190005613 TCTTGCAGAGAAGATGAAGGA 59 190005655 190005673 AAGTCAATCTCCTGGTCGC 60 NA Rattus norvegicus 81 Tsc1 ENSRNOG00000011470 ENSRNOT00000016904 1 1 1 80 3 7259096 7259115 GCTGCATAGCCAAATCAGAC 60 7259157 7260150 TCCAGCTTCGTCTGTAACTC 60 NA Rattus norvegicus 81 Rn60_20_0013.2 ENSRNOG00000053091 ENSRNOT00000079038 2 1 1 60 20 1578105 1578129 CTTTGTTCTATACCTTAGTGCTCTC 59 1578069 1578088 TGAGGTATCCCTTCATTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561333 ENSRNOG00000031381 ENSRNOT00000048691 3 1 1 60 1 273563780 273563798 TGTTGTCTGGAGGAGAAGC 59 273563822 273563840 CATAGTTCCCAGAGGCTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 2 2 2 93 1 31871821 31880989 CAAGATCAAAGGGAAGTCCTG 59 31871748 31871766 GCTCTTATCCTTGAACCGC 59 NA Rattus norvegicus 81 Fggy ENSRNOG00000008907 ENSRNOT00000011767 1 1 1 80 5 114816564 114822762 CTATTCAAGCCATTGCTTTCG 58 114822799 114822822 AGAAGAGGGTACTAAGAGAATGTC 59 NA Rattus norvegicus 81 LOC685160 ENSRNOG00000032131 ENSRNOT00000049860 1 1 1 80 19 29013792 29013814 CAACTTAGAGATGGAGAACACTG 59 29013092 29013753 TGCAGATTGCTAGAGAAGGT 59 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 3 2 2 84 6 102367207 102369305 AAGGCTTCTTAGCTGAGGA 58 102367141 102367160 TCTGCAGTCTTAGAGTAGGG 58 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161,ENSRNOT00000056818 1 2 2 80 8 96026552 96026731 ACCTGATGTATGTAGGGCG 59 96026490 96026509 TAAAGAGGATTCGAGTGCCC 60 NA Rattus norvegicus 81 Scara5 ENSRNOG00000014398 ENSRNOT00000019487 3 1 1 81 15 49083580 49083598 CAACGGCTCCATCTTTGAG 59 49083642 49101765 CTTGTGACATGGACCATCCT 60 NA Rattus norvegicus 81 Hpcal1 ENSRNOG00000005492 ENSRNOT00000007374 1 1 1 80 6 43102322 43102340 CCTTCAGCATGTACGACCT 60 43102384 43103932 TCTTGTAGATGGCCTGCAC 60 NA Rattus norvegicus 81 LOC501317 ENSRNOG00000047982 ENSRNOT00000049865 2 1 1 80 19 28968252 28968911 TAACTTCTATCGCAACCTGCA 60 28968953 28968971 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Irg1 ENSRNOG00000009919 ENSRNOT00000013182 1 1 1 81 15 93613066 93615410 GATGCTCAAGTCTGTCACAG 59 93615454 93615472 CTGAATGACGCCATCTGTC 59 NA Rattus norvegicus 81 Irg1 ENSRNOG00000009919 ENSRNOT00000013182 2 1 1 81 15 93616357 93617962 GTGTTGCTATTCACTCCATGG 59 93618005 93618023 GTGAGCACAGGTAGGACAG 60 NA Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 2 2 2 82 8 11904553 11909120 TTCTGGAAACTTTGTATGCTGG 59 11909159 11909181 GCGATCATCCAAGTAATGAAGAG 60 NA Rattus norvegicus 81 Mmp21 ENSRNOG00000017756 ENSRNOT00000023946 3 1 1 80 1 205747718 205748012 CCTTCTCAAAGTAGCTGTCCA 60 205747658 205747677 GGTTGCATTATGGATCCCAC 59 NA Rattus norvegicus 81 Olr1164 ENSRNOG00000030965 ENSRNOT00000047442 3 1 1 60 8 20213455 20213473 CAGTGATGCCCTATGACAG 58 20213494 20213515 AGAATGACTTGGTAGTGTAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc13a3 ENSRNOG00000019118 ENSRNOT00000025843 1 1 1 80 3 162100006 162104416 GTTTGACTTCAAAGCTCCCA 59 162099945 162099964 ATATTCCAGGGCACTGTCTC 59 NA Rattus norvegicus 81 Podnl1 ENSRNOG00000006741 ENSRNOT00000037453 1 1 1 80 19 25242774 25243257 ACCTGCAGAACAATCTTATCTC 58 25243298 25243316 GCTGGAGATACAATTCCCG 58 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000083381 1 1 2 100 15 45712980 45718134 GAAGGCTTGCATGTCATCC 59 45718197 45721082 GTAGTCGGACTTAGTGGGTG 60 NA InUTR Rattus norvegicus 81 Oxct1 ENSRNOG00000043094 ENSRNOT00000065313 3 1 1 80 2 53923610 53925389 GGATGGCATGTATGCTAACC 59 53925430 53925450 AGATGAACAGTCATGTTTGGG 59 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894,ENSRNOT00000073048 3 2 2 81 9 10161089 10162430 GCTCTCCTCACATTAAAGTGTC 59 10161029 10161048 AGCAAGCTATAGCCTCACTG 60 NA Rattus norvegicus 81 Nkx2-6 ENSRNOG00000021910 ENSRNOT00000032826 1 1 1 63 15 51034669 51034687 CAAATCTTGTGAGGGAGCC 59 51037367 51037385 AGGTTCTCGACTCCAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Dusp21 ENSRNOG00000024138 ENSRNOT00000000173 2 1 1 60 X 4957302 4957320 TCACCTTGTCCAACAACCA 59 4957260 4957281 GTGTTCACTACTTCTACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp21 ENSRNOG00000024138 ENSRNOT00000000173 3 1 1 60 X 4957301 4957319 CACCTTGTCCAACAACCAC 59 4957259 4957280 TGTGTTCACTACTTCTACAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2d ENSRNOG00000016940 ENSRNOT00000023139 1 1 1 80 1 211225677 211226718 GGAACAAGAGAATAAAGGCCG 59 211226759 211226778 AACTCTGGCTCATGACTCTG 60 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 3 6 6 80 1 282683408 282683544 CCATTCCTATGGTCATGGG 57 282683586 282683606 CTGTATCCTTTAGAACAGCCT 57 NA Rattus norvegicus 81 Vom2r50 ENSRNOG00000049200 ENSRNOT00000039327 1 1 1 80 4 156484066 156484085 ATAGGAGGCATTTCAACAGG 58 156484128 156494212 AGCATAGCTGATCTGAGGG 59 NA Rattus norvegicus 81 Bmyc ENSRNOG00000042556 ENSRNOT00000064358 3 1 1 83 3 2916943 2916961 CTTCATGTGCGACGATGAG 59 2917006 2917026 AATTTCTTCCAGATGTCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037960.1 ENSRNOG00000003588 ENSRNOT00000004806 2 1 1 60 X 36280223 36280244 AGCTGCACATTAATCTCATTCC 59 36280166 36280185 CCCTTGGTCATTCCAATACC 58 NA DesignNoJunction Rattus norvegicus 81 Ap4m1 ENSRNOG00000001353 ENSRNOT00000001827 1 1 1 80 12 19318171 19318294 AGTCAGAACTGAGAGGTTATGG 59 19318330 19318353 CAAACTCATCTAGATTGACAGAGC 60 NA Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 1 2 2 80 1 213975124 213975142 TCGGCTTCAGTCACTTGAG 60 213974970 213975081 TGTCTCCAGATCTTCCTTGC 60 NA Rattus norvegicus 81 Olr1730 ENSRNOG00000000759 ENSRNOT00000000986 1 1 1 60 20 1647998 1648017 TCTTCTGTGACATACCTCCT 58 1648037 1648058 AGTTCATTAAGGGCAGTATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vmo1 ENSRNOG00000026508 ENSRNOT00000029421 3 1 1 177 10 57121275 57121404 TTCTCTGTCAAGGTGGAGC 59 57120803 57120821 CTAGGAAGCTAGTGCCAGG 59 NA Rattus norvegicus 81 Cysltr2 ENSRNOG00000015042 ENSRNOT00000020186 2 1 1 60 15 54905801 54905820 CCAGATGCTCCATATCACCA 59 54905760 54905780 GACCCATATAATCCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 2 1 1 60 15 18516964 18521108 GAATGATGTGCTCATGAGGC 60 18516923 18516943 AGTAGCAGAGCTGATGAAGTC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07018556.1 ENSRNOG00000049650 ENSRNOT00000045865 2 1 1 60 15 64940257 64940275 GGAAGCCTACAGAACTCCA 59 64940299 64940317 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss12 ENSRNOG00000015353 ENSRNOT00000021116 2 1 1 80 2 227687805 227689352 GTGCTCCTCTGACAGATGG 60 227689394 227689414 CCCTATAGTACACCTCCAAGC 60 NA Rattus norvegicus 81 Olr1407 ENSRNOG00000047056 ENSRNOT00000047984 3 1 1 60 10 36499566 36499586 TTGACATTAGTGCTCCATCTG 58 36499605 36499626 CTTCCCAACATATGATTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562492 ENSRNOG00000037219 ENSRNOT00000051280 1 1 1 80 1 101271252 101274675 GTTGAGAGCAATGTCTCCA 58 101274719 101274737 GATGTCTTTAGGAGGCCAG 57 NA Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 2 2 2 80 19 30880747 30883019 CAAGTTACGGAAAGATGCTGG 60 30883059 30883079 TCCAAGGAACTGGATCTATCG 59 NA Rattus norvegicus 81 Olr1744 ENSRNOG00000029420 ENSRNOT00000044570 2 1 1 60 20 1862105 1862124 TGTCCCTCTTCTATGCTGTG 59 1862146 1862165 TTCCTCAGGCTGTAGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr30 ENSRNOG00000029233 ENSRNOT00000051266 1 1 1 60 1 150225954 150225975 ACTCTTACTTCTTCTGACTGCC 60 150225993 150226014 TACAGCAATGAAGGTAAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000024825 1 2 3 80 18 29402344 29402365 AGATTTACGCACAGTAGATCCA 59 29402403 29406113 GTTGACAATTTGCCAATTCCTG 59 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000032316 2 2 3 163 18 29492131 29492149 GAAAGTTCCTGCTGGAGTG 59 29492274 29492410 TTGTTCGTCATCGGTTATCTC 58 NA Rattus norvegicus 81 Kdelr2 ENSRNOG00000001083 ENSRNOT00000001438 1 1 1 80 12 13197296 13197314 GAGTGGAGTTTCTTGTGGT 57 13195896 13197253 TCCACAAGATCTCAAGAGGA 58 NA Rattus norvegicus 81 Gtpbp8 ENSRNOG00000002044 ENSRNOT00000002797 1 1 1 80 11 60913546 60913564 CAAGTGCTCCAGATTCAGG 58 60913608 60916453 GGTTACTGCGCTTATAGGG 58 NA Rattus norvegicus 81 Smad1 ENSRNOG00000018483 ENSRNOT00000025079 3 1 1 80 19 32232526 32232545 CTATGGACACGAACATGACG 59 32232586 32236108 AAGCAACTGCTTGAACATCTC 60 NA Rattus norvegicus 81 LOC100911398 ENSRNOG00000045616 ENSRNOT00000075040 3 1 1 60 10 44330967 44330986 ACACTTTCCTCTTCACAGTC 58 44331007 44331027 GTGATGTTTCCTATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 1 2 2 80 5 16913699 16913718 TAACAACCATGGCCATTTGG 59 16909788 16913658 CTTGCACAATAGTCTGACAGC 60 NA Rattus norvegicus 81 Tnfaip8l1 ENSRNOG00000045999 ENSRNOT00000074502 1 1 1 60 9 10897185 10897203 CCCAGAAGAAAGTCCTCAG 57 10897143 10897162 TCATCCACAAATACAGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 3 2 2 84 7 70584140 70584159 GTATGAGGATCTGCAGGAGG 60 70584203 70584526 TGATTCTTCCTCTTCGTTTCCT 60 NA Rattus norvegicus 81 Wipi2 ENSRNOG00000001114 ENSRNOT00000001476 1 1 1 80 12 13990380 13997876 GATAACACGTCCCTAGCTG 57 13990318 13990337 GATCTGTTCCAGCTTATCCA 57 NA Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000081519 3 1 2 88 10 102193557 102193575 ATGATGACAACCACCCTCC 59 102183490 102193505 TACAGGCACTTCCTCTGTG 59 NA Rattus norvegicus 81 Chad ENSRNOG00000003304 ENSRNOT00000004435 1 1 1 80 10 82293127 82293145 GACAATGCCTTCCAGTCCT 60 82293187 82294851 AGCATCTGAGAACTTCTCCAG 60 NA Rattus norvegicus 81 Shisa2 ENSRNOG00000012521 ENSRNOT00000016826 1 1 1 60 15 39949110 39949128 GTACTCAACTGTCAGCAGG 58 39949152 39949170 GAGTATGCAAGTACTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss35 ENSRNOG00000025184 ENSRNOT00000034683 3 1 1 99 8 94424127 94424145 GACACAGCAAGCTTCTCAG 59 94437778 94437796 GATCCCAAAGACAGGGTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Glo1 ENSRNOG00000000541 ENSRNOT00000000650 1 1 1 82 20 9279849 9283068 TCTTGGACTGACGCTTCTC 60 9279785 9279804 CGTTCTTATCCTCGTACGCT 60 NA Rattus norvegicus 81 Olr1343 ENSRNOG00000047906 ENSRNOT00000051686 1 1 1 60 9 99658600 99658619 CTCCAACAAGCTCATCTCTG 58 99658559 99658580 GATCAAAGGATTCATCATGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp874b ENSRNOG00000051377 ENSRNOT00000077781 1 1 1 91 1 37861689 37863702 TGACATGAAGGAAATGCTGTC 59 37861618 37861636 ACAGATTCCACTGAGCAGG 59 NA InUTR Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107,ENSRNOT00000073209 1 2 2 80 10 59700472 59710300 GAACCACAGGACAAAGATCAC 59 59710339 59710360 ATACTGCTGCCAATGATTAGAG 58 NA Rattus norvegicus 81 Phax ENSRNOG00000014459 ENSRNOT00000019627 2 1 1 80 18 51662410 51664756 AAATGGCGAAAGTACTAGGTG 59 51664796 51664816 TGGAGTCCACATGTTTAACAG 58 NA Rattus norvegicus 81 Rin1 ENSRNOG00000050223 ENSRNOT00000072261 2 1 1 81 1 220336238 220336256 ATCTCTTTGGAGGGCTCAG 59 220336299 220336429 GAAGAATGTCCCTGGTATGAC 58 NA Rattus norvegicus 81 Mln ENSRNOG00000042186 ENSRNOT00000067667 1 1 1 60 20 6571708 6571729 CCAGATTGAAGCTTTCCTTACC 59 6567175 6571687 AGTCAACTGCAGTCTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr477 ENSRNOG00000031811 ENSRNOT00000040714 2 1 1 60 3 73426004 73426023 TGTTGACCTCTGTTACTCCT 58 73426046 73426064 CTCCACCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cby3 ENSRNOG00000003395 ENSRNOT00000004517 3 1 1 92 10 35858020 35858039 TAATCCAGCAATGGGACCAG 60 35859189 35859207 CCTGGAATGATGAAGGCGA 60 NA DesignNoJunction Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725,ENSRNOT00000045628 2 2 2 80 8 111705668 111707385 TACAAACCCACAATCAGATGTC 59 111705609 111705627 CAGTTGATGCTGGAGTCTG 58 NA Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000075866,ENSRNOT00000065194 3 2 2 60 X 63165736 63165755 CCGTAGACATTGTGGAAAGC 59 63165695 63165715 TTTGGATCAAGCAGTTCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911547 ENSRNOG00000048711 ENSRNOT00000072882 1 1 1 60 8 21034162 21034181 CCATTTGTCACCCTCTACAC 58 21034202 21034222 ACCAAACATCTACATAGGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map6 ENSRNOG00000027204 ENSRNOT00000034389 1 1 1 95 1 164227993 164271772 TCCTACAGGAACGAATTCAG 57 164271830 164271848 AACCATCTTGTCATCTGGG 57 NA Rattus norvegicus 81 Serpinb9 ENSRNOG00000033772 ENSRNOT00000022194 1 1 1 80 17 32658653 32659762 GTCCAGATATCTCAGGCAC 57 32658591 32658610 GTTCAGGTTACTGAGAAGCA 58 NA Rattus norvegicus 81 Mir410 ENSRNOG00000035557 ENSRNOT00000053680 3 1 1 60 6 133893999 133894018 TTGAGGAGAGGTTGTCTGTG 59 133894038 133894059 GGCCATCTGTGTTATATTCGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnp2 ENSRNOG00000002566 ENSRNOT00000003455 3 1 1 81 10 4954214 4954232 AAGTGAGCAAGAGAAAGGC 58 4954275 4954488 CACTTGTATCTTCGTCCTGAG 58 NA Rattus norvegicus 81 Zfp69 ENSRNOG00000028662 ENSRNOT00000030016 1 1 1 95 5 139863012 139863673 GTATCAGTGGGATATCAACTTTCC 59 139862940 139862958 ATCCTTTGGGCCTTGACTC 60 NA Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000077111 2 1 2 81 9 49481488 49481506 ACAGACTGAACAGGAAAGC 58 49481551 49481653 GGTCTCAAAGGCTCTTTCG 59 NA InUTR Rattus norvegicus 81 LOC100911274 ENSRNOG00000012705 ENSRNOT00000017241 3 1 1 80 10 85634097 85634743 CCAGCAAGTACAAGGTGGA 60 85634035 85634058 AGATGTAGGCTATGTCCATTAAGG 60 NA Rattus norvegicus 81 Taar4 ENSRNOG00000029877 ENSRNOT00000047810 2 1 1 60 1 22558878 22558899 TCATATACGGCATGTTCTATCC 58 22558839 22558859 GTCCCTGTGACTATCATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275,ENSRNOT00000042432 1 2 2 80 20 10375056 10375406 GATGAGTATGGAGAAGGTGGA 59 10374996 10375014 GAATCGAATCTGGCGTTGG 59 NA Rattus norvegicus 81 LOC685544 ENSRNOG00000020131 ENSRNOT00000027270 3 1 1 61 1 215460771 215460789 GTCTTCCTGTTGCCAATCC 59 215460814 215460832 GCTTACAACAGCTGGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a1 ENSRNOG00000012410 ENSRNOT00000017000 1 1 1 82 2 189903129 189903149 GGGACAAATATAAGCTGAGCA 58 189900799 189903085 ATCCTTCTGGACATCCAGG 59 NA Rattus norvegicus 81 Itpripl2 ENSRNOG00000036762 ENSRNOT00000055106 3 1 1 60 1 188141468 188141486 CGAGGTGCTTCTGAATGAG 58 188141426 188141444 CTCACTCAGGTATGCCTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx8 ENSRNOG00000010461 ENSRNOT00000013979 2 1 1 80 2 44906838 44906859 TTCTACTCCTTTGAAGTGAAGG 58 44906315 44906798 TACAACTAGGGAAGCTTTGC 58 NA Rattus norvegicus 81 RGD1566326 ENSRNOG00000045620 ENSRNOT00000051901 3 1 1 60 3 85545112 85545130 ATCAAGCACTCAAAGAGCA 57 85545151 85545172 TCTTCTGATTGTTCTCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim7 ENSRNOG00000042037 ENSRNOT00000066121 2 1 1 82 16 18977560 18977578 TGAGCCTGAGGTATTTCCG 59 18977624 18978629 TCAAGAGCCGAACAGTACG 60 NA Rattus norvegicus 81 Tmem218 ENSRNOG00000008757 ENSRNOT00000012060 3 1 1 81 8 39698835 39702021 GTGAAATGAAGATTGTGGATGC 59 39702063 39702081 AGGCCTCCAAGAAAGACAG 59 NA Rattus norvegicus 81 Prmt10 ENSRNOG00000012928 ENSRNOT00000017347 1 1 1 80 19 34085890 34085908 AGTTTGTCCACAAGTCCCA 59 34081308 34085849 TATCCAGTAGTCTTCAAGTGCC 60 NA Rattus norvegicus 81 Ccdc84 ENSRNOG00000012137 ENSRNOT00000016227 3 1 1 80 8 48732476 48732569 GATGAGGTGATTAAAGAGATGGC 59 48732418 48732438 CTCTAAGACAGATCGGACCAC 60 NA Rattus norvegicus 81 Olr295 ENSRNOG00000033387 ENSRNOT00000045179 1 1 1 60 1 212911420 212911438 TGTGTTCTGTGCCTATGTC 58 212911378 212911398 GGTAACTTTGCTTCTTTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 3 2 2 80 3 46305038 46305619 GATTCTGAATATCAGTCTGCCTC 59 46305655 46305677 AGTTATCTCAGACTCACTGTACC 59 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 1 2 2 80 13 47320051 47320941 CTCCTGTTCTTGGTGACTG 58 47319989 47320010 GGAAGGATACCTCATCTAACTG 58 NA Rattus norvegicus 81 Lonp1 ENSRNOG00000046502 ENSRNOT00000074253 2 1 1 80 9 10432575 10433182 GATGATAACAATGAGTCAGACG 57 10433222 10433241 CATCTCATGAATCTGAGCGA 58 NA Rattus norvegicus 81 Hecw2 ENSRNOG00000013257 ENSRNOT00000017761 1 1 1 80 9 60536142 60536161 TTTGCGTCAACCTAACATCC 59 60520858 60536100 ATCTTCTCCCTGAGTGAGTG 59 NA Rattus norvegicus 81 Gipr ENSRNOG00000015860 ENSRNOT00000021456 2 1 1 91 1 80070600 80070618 TGGTAGTGATGGCCAATGG 60 80069946 80070545 AGATCAGCTTCTGGTCCTG 59 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073,ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 3 4 4 80 3 8476087 8476344 TGCAGATCAAGAATTTAGAGCG 59 8476384 8476403 TCAGTTCCTTTAGCTGCTCC 60 NA Rattus norvegicus 81 LOC685513 ENSRNOG00000023899 ENSRNOT00000036953 3 1 1 109 19 26181258 26181365 CGCATAAAGGTATCCAAGGC 59 26181168 26181186 TCCTTGAAAGGGTTGGTGG 60 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 2 2 2 80 9 5306580 5312558 TAGGATTGTGGATCAGTGTCC 59 5306520 5306539 ATTTAGCATGCACAGCAGTG 60 NA Rattus norvegicus 81 Mst1 ENSRNOG00000019680 ENSRNOT00000026711 3 1 1 80 8 116859893 116860062 AGAAATATGCTTGCAAGGACC 59 116860104 116860122 GAGATGTGAAGCACCAAGG 59 NA Rattus norvegicus 81 Olr1380 ENSRNOG00000049114 ENSRNOT00000041708 1 1 1 60 10 12776810 12776830 AAGTTTGTGTCATGATGGTGG 59 12776770 12776791 TGCAATAGGACATTCAGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748,ENSRNOT00000077789 2 2 2 120 16 19361805 19363123 ATTGAGGAGCATGCCTCTG 60 19361322 19361340 TGATCCCATAGTCGAGTGC 59 NA Rattus norvegicus 81 AABR07001408.1 ENSRNOG00000033265 ENSRNOT00000045014 1 1 1 60 1 42741531 42741550 GCTGCAAAGAAGACAAAGAG 58 42741490 42741509 TTCATAACAAGTTGGAGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serp1 ENSRNOG00000011763 ENSRNOT00000017868 3 1 1 89 2 148721530 148721823 CTAAGACCTCGAGAAATGCC 58 148720176 148721478 TTGCAGATCCACAAACGAC 59 NA Rattus norvegicus 81 Smyd5 ENSRNOG00000015589 ENSRNOT00000020909 1 1 1 80 4 117228664 117228684 TGTATCAGCTACTTAGACTGC 57 117228724 117228823 GAACAAGTAGTTCTCCCTGAG 58 NA Rattus norvegicus 81 Olr510 ENSRNOG00000052014 ENSRNOT00000090000 2 1 1 60 3 73879105 73879123 TTTCTGTGACATCCCTCCT 58 73879063 73879081 AAGCTGATTGATGTGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aamdc ENSRNOG00000012584 ENSRNOT00000016783 3 1 1 80 1 162527411 162533682 ACAGGAACTGAGCATTCTC 57 162527349 162527369 AATCACAAGAGTCTGTACACC 58 NA Rattus norvegicus 81 Fam32a ENSRNOG00000039528 ENSRNOT00000019556 1 1 1 95 16 19308582 19308600 GCAAGAAGAACGAGGAGGA 59 19306426 19308523 TTTCCATTTGCCGCTTCTC 59 NA Rattus norvegicus 81 Pxdc1 ENSRNOG00000017093 ENSRNOT00000060143 3 1 1 80 17 30991049 30991070 AACAATAGTCATTGACCACAGC 59 30991108 30993368 TTCTCAAACAAATGCTCTGTGG 60 NA Rattus norvegicus 81 Lgi3 ENSRNOG00000011323 ENSRNOT00000015104 2 1 1 82 15 52221093 52221111 CCAGGGATACAGCCTTCTG 60 52221157 52221972 ATTCACCAGTGTCAGGGAG 59 NA Rattus norvegicus 81 AABR07014487.1 ENSRNOG00000039548 ENSRNOT00000060618 2 1 1 60 14 17809287 17809306 TGTTGGAAGGAGTGGATAGG 59 17809246 17809267 TTGAGTTTACACCTCCTAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa3 ENSRNOG00000033933 ENSRNOT00000051936 3 1 1 81 11 67312748 67313990 TTCATGAAGGTGGATGTAGG 57 67314032 67314052 GTTTCAAATCATCGTCTCCAG 57 NA Rattus norvegicus 81 Isg20l2 ENSRNOG00000011402 ENSRNOT00000015471 3 1 1 89 2 187310977 187311451 ACATCCAGACTGGACTAAGTG 59 187311500 187311520 GTTCCCATTCAACTTCAACCA 59 NA Rattus norvegicus 81 Klhl15 ENSRNOG00000006515 ENSRNOT00000008558 3 1 1 84 X 63358960 63358978 TCTGATGACTCCATCCAGC 59 63388852 63388870 GTCAACTTCATACCGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000085612 2 1 3 80 6 29046692 29046710 TTCTTCTGATGAAGAGCGC 58 29046752 29049765 AAGTTCATAGGCAAACACCTG 59 NA Rattus norvegicus 81 Ssr2 ENSRNOG00000019940 ENSRNOT00000027123 1 1 1 80 2 187952600 187952618 TTCCCTCCAGAAGACTTCG 59 187952662 187955602 GGAGACATTGCTAGCAGGA 59 NA Rattus norvegicus 81 Npy2r ENSRNOG00000049213 ENSRNOT00000072029 1 1 1 60 2 181531108 181531126 CATGCCTTCCAACTTGCTG 60 181531066 181531086 GTTTGTACTCCTTCAGGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc88b ENSRNOG00000024931 ENSRNOT00000067217 1 1 1 80 1 222106114 222106132 GAACAGAGAACTGCTGGAG 58 222105831 222106071 TTAAGCTGGTCCAGGTACTC 59 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076,ENSRNOT00000055238 3 2 2 80 10 88948468 88952678 AGAAGCATTTGGGAACTCTC 58 88952718 88952739 GCTGAATAATTTCAGCATCCTC 58 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889,ENSRNOT00000092189 3 2 2 80 10 40877927 40913692 GAGACAACCATGGACTACAG 58 40877866 40877886 AGGATATTCATTGTAGGCGAG 58 NA Rattus norvegicus 81 Rhebl1 ENSRNOG00000054385 ENSRNOT00000089523 2 1 1 80 7 140553262 140553442 CACGGGATAATCAGCTAATTCAG 60 140553204 140553227 CTTGTCCATAAGAATTCTCCACAC 60 NA Rattus norvegicus 81 N4bp2l2 ENSRNOG00000001108 ENSRNOT00000001468 1 1 1 80 12 632226 632617 TATGTGGAAATGGCCATAGG 58 632165 632184 TTCTTCAGGGTCAAACTTCC 58 NA Rattus norvegicus 81 N4bp2l2 ENSRNOG00000001108 ENSRNOT00000001468 3 1 1 80 12 632225 632616 ATGTGGAAATGGCCATAGGA 59 632164 632184 ATTCTTCAGGGTCAAACTTCC 58 NA Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 1 1 1 61 X 67564139 67564322 AGGTAAGAAGGCCAAAGGG 59 67564347 67564365 AATTCTTGGCAGGGTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mnd1 ENSRNOG00000024733 ENSRNOT00000031179 2 1 1 80 2 183120953 183120973 ATTACTATTGGGCTTTCCCGA 59 183099995 183120914 CCTCTGATAGCTGAGAGTTCAG 60 NA Rattus norvegicus 81 Rhbdd3 ENSRNOG00000027032 ENSRNOT00000031914 3 1 1 81 14 85356547 85356567 CACTTCTTGATGTGTCAGTCC 59 85356608 85356713 TGCTGAAGCCTTAGAGAAGAC 60 NA Rattus norvegicus 81 Foxn2 ENSRNOG00000040110 ENSRNOT00000061693 2 1 1 80 6 12188481 12188502 GTTGATCCAGAATATAAGCCCA 58 12188541 12193962 CGATAAAGAAGCACTTTGTGG 58 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699,ENSRNOT00000043971 3 2 2 80 19 25061432 25061600 TATATCAAGGCTGTGGTGGAG 59 25061641 25061660 GGTGGCATTCATGTCTTTCC 60 NA Rattus norvegicus 81 Def6 ENSRNOG00000000502 ENSRNOT00000000597 3 1 1 81 20 7797014 7797654 CCTAGACAAGGTGGAGGAG 59 7797699 7797717 GTAGTTCTTCTTGGCCGTC 58 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000050922 ENSRNOT00000072875 1 1 1 111 1 198044606 198044964 TCTTATGTCGTCGGTGGAG 59 198044513 198044531 TCTGGAACTTGGTCAGCAG 60 NA Rattus norvegicus 81 Emid1 ENSRNOG00000033575 ENSRNOT00000057361 2 1 1 87 14 85393157 85393175 CTGTCATGTGCAGAATGGC 60 85392727 85393106 GGTTCTGTAGCTGTTCCCA 59 NA Rattus norvegicus 81 LOC691519 ENSRNOG00000036743 ENSRNOT00000030732 3 1 1 103 1 190466242 190478002 CAAATAAGGATGGCTTCACAC 58 190478065 190478085 ATCAGCTGCATGTATACTAGC 58 NA Rattus norvegicus 81 Rn60_3_0430.2 ENSRNOG00000006829 ENSRNOT00000008925 2 1 1 60 3 37875730 37875748 GTTAGTGGTGGGCTATGAG 57 37875688 37875707 CATCCTGACAAGCTCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata31d1b ENSRNOG00000043261 ENSRNOT00000064170 1 1 1 80 17 5334321 5334381 GGCAAAGGAAGAGAAGCTG 59 5334259 5334277 TTGCTTCTTGCTGAGTGAG 58 NA Rattus norvegicus 81 LOC100909856 ENSRNOG00000025724 ENSRNOT00000031928 2 1 1 80 5 142799815 142799834 TGCCAAGAAACATTGAAGGT 58 142799875 142815415 GGTACCGCTTTACTTCTTTCC 59 NA Rattus norvegicus 81 Spr ENSRNOG00000015455 ENSRNOT00000020749 1 1 1 80 4 116915427 116915764 ATCAACAATGCAGGCACTC 59 116915365 116915384 CCAGTAGTTGTTCACCTCAG 58 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822,ENSRNOT00000042524 1 2 2 80 1 166383840 166383859 GATGAGTTGACCATTGAGGA 57 166383902 166384042 ATTTCGAGCCTTTACCCAG 58 NA Rattus norvegicus 81 Fitm2 ENSRNOG00000027434 ENSRNOT00000031904 1 1 1 60 3 159860708 159860726 CTGGGTGTGGATGTTTCTG 59 159860666 159860686 GAACACTTTCTGGATCAAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g4d ENSRNOG00000037231 ENSRNOT00000056258 1 1 1 80 3 112051286 112051304 GAAGGAGGTGACCGTAGAC 59 112050931 112051123 TCCTTAGGGCAACTGTCTG 59 NA Rattus norvegicus 81 Coq3 ENSRNOG00000009974 ENSRNOT00000013384 2 1 1 80 5 36054604 36056327 TCTTGGAACCAAATGGTCTG 58 36056370 36056388 CAGTCCAATGCCAGTAACC 59 NA Rattus norvegicus 81 Polr3b ENSRNOG00000007432 ENSRNOT00000009746 3 1 1 80 7 24752843 24752861 ATCTCAAGTGATGCCTTCG 58 24745895 24752799 CTTGCAGTAGTGACACCAG 58 NA Rattus norvegicus 81 Lce1m ENSRNOG00000009581 ENSRNOT00000012691 2 1 1 88 2 193334963 193334982 GATCTACTCCTGTGCCTGAG 59 193334520 193334538 GATCTTGCATTTGGGAGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000035590,ENSRNOT00000080694 2 3 4 80 19 41314592 41322183 AAACTCGAAGCCCTTACTC 57 41314530 41314549 CAAAGTTCACTTCCAGTTGC 58 NA Rattus norvegicus 81 Cdk13 ENSRNOG00000013620 ENSRNOT00000018431 3 1 1 80 17 49899837 49911296 GAGCTAATAAGTCGTATATGTGGG 59 49911333 49911353 CATGGTGTTGAAATATGGCAG 58 NA Rattus norvegicus 81 Plekhm3 ENSRNOG00000023760 ENSRNOT00000032782 1 1 1 80 9 71617697 71631177 GCTCAAGGAAATACAGAACAC 57 71617637 71617657 GTCATGGTTCTTCCTGATCTC 58 NA Rattus norvegicus 81 Atg16l2 ENSRNOG00000019413 ENSRNOT00000026286 2 1 1 80 1 166411736 166413450 CTAGTGCCGGCTTATAACC 58 166411674 166411693 CTTTGGTTCTGACTTCAGCT 58 NA Rattus norvegicus 81 Lfng ENSRNOG00000001250 ENSRNOT00000001682 2 1 1 80 12 16120817 16120951 ACAGAGTGAGACCTGTCCA 60 16120755 16120773 CCATCTTTAGGGCCAGTCC 60 NA Rattus norvegicus 81 Tox ENSRNOG00000010777 ENSRNOT00000014661 2 1 1 83 5 19894495 19902190 CATGCAGCAAGGATTTACTCTC 60 19894433 19894451 GCTTGGGTGACAACTTGTG 60 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000011659 2 1 2 81 6 51018048 51019006 AATCTTTAGCAGAGGGCCC 60 51017985 51018004 CCAGGGAGCCTCTTAATCAG 60 NA InUTR Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263,ENSRNOT00000004350 1 2 2 82 13 99143920 99145151 CCTCAAAGGTATGCAGGCT 60 99145197 99145215 TCTTTGACCTGTTAGGCCG 60 NA Rattus norvegicus 81 RGD1359290 ENSRNOG00000027271 ENSRNOT00000029782 2 1 1 80 10 95642773 95642794 CCAAGTATCTGAAGGATGTCAC 59 95642834 95642946 CAGCATTACTCTCGACTCCA 59 NA Rattus norvegicus 81 Tbc1d2b ENSRNOG00000014543 ENSRNOT00000030645 1 1 1 80 8 97590412 97593420 AAGGCCTAAACAGGTTGGT 59 97590350 97590369 CCACAATGGTAACGAGACAC 59 NA Rattus norvegicus 81 Adra2c ENSRNOG00000009299 ENSRNOT00000012322 1 1 1 60 14 80730616 80730636 AACCCGGTCATCTATACTGTC 59 80730576 80730595 AGAGGATGTGCTTGAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498154 ENSRNOG00000001289 ENSRNOT00000001734 3 1 1 93 12 17378676 17379499 ACGATGAGGACAAGGTTCC 59 17379556 17379574 TTCTGCACTGTCAGCTCTC 60 NA Rattus norvegicus 81 Troap ENSRNOG00000060703 ENSRNOT00000089448 3 1 1 80 7 140761124 140761142 CTCCTTTCATTCCTCCGCT 60 140761186 140761540 GTACAGGATCCATCCCTGC 60 NA Rattus norvegicus 81 Eaf2 ENSRNOG00000002350 ENSRNOT00000003208 1 1 1 80 11 66915619 66915638 ACAGGACTTCAGATGCTGAC 60 66915675 66922864 GATCACTTCGTAAAGTACTCATCAG 60 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000031315 ENSRNOT00000043171 2 1 1 60 10 57251325 57251343 CAGTACAAGAAGGGCAAGG 58 57251367 57251385 GTTTCCTGTCATAACGCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il22ra1 ENSRNOG00000027976 ENSRNOT00000031512 1 1 1 80 5 154082899 154083721 GTGGAATATAAGAAGTACGGAGAG 59 154083760 154083778 CAGGTTGCAGAACTTCTGG 59 NA Rattus norvegicus 81 Mvb12a ENSRNOG00000017949 ENSRNOT00000024413 2 1 1 87 16 19973945 19974098 GTATCCCAGAGAACCCTCAG 59 19974148 19974166 ACTGTAGAGAAGCCTGGTG 59 NA Rattus norvegicus 81 Mdfic ENSRNOG00000053787 ENSRNOT00000082453 2 1 1 80 4 42222618 42252588 CTTGTCAGAACCCAACCTG 58 42252631 42252650 TATCTTGCTGGTTTCCTCCT 59 NA Rattus norvegicus 81 RGD1561931 ENSRNOG00000021589 ENSRNOT00000035653 1 1 1 60 X 74968375 74968394 GCTGAGGACTAACTTCAGTC 58 74955705 74968353 TCAAATGTTGTCCAACAGGA 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Cdh7 ENSRNOG00000032490 ENSRNOT00000041413 2 1 1 80 13 31092550 31092570 GGGTTTGGAATCAGTTCTTCG 60 31092610 31140436 CAACATCAGAGTGAAGCTTCC 59 NA Rattus norvegicus 81 Olr1311 ENSRNOG00000048548 ENSRNOT00000047759 2 1 1 60 8 43382396 43382417 CTACAGCTCCAAAGATGTTGTC 59 43382437 43382456 CCCTTGAAAGAGATCCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051793.1 ENSRNOG00000039141 ENSRNOT00000030332 2 1 1 90 3 21556838 21586080 AAACCAATTGTACTGCCGC 60 21586133 21586152 CCTGTTCTCATTCTGTGCTC 59 NA Rattus norvegicus 81 Olr334 ENSRNOG00000042023 ENSRNOT00000067320 3 1 1 60 1 229443495 229443516 CTCTACTCATCCATCATGTCAC 58 229443536 229443555 CTGTATAGCTTCCCATCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 3 1 1 100 1 264893922 264896002 CAAAGGACAGGTTCACAGG 58 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07051190.1 ENSRNOG00000005062 ENSRNOT00000006710 1 1 1 85 3 261260 261278 TAACCACAACGAATGCCAG 59 261327 261463 TGAGGGATGACCATACGTG 59 NA Rattus norvegicus 81 LOC100360791 ENSRNOG00000033517 ENSRNOT00000044222 2 1 1 60 1 20116444 20116462 CTACCGTGAAGATGGTGTG 58 20116485 20116504 TTCCATCTCTAAGCCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifb2 ENSRNOG00000012197 ENSRNOT00000016431 1 1 1 80 3 149374547 149374895 ATCACCTCAATGCTCTCCTG 60 149374938 149374956 CCAAGACCTCAGAGTGGAC 59 NA Rattus norvegicus 81 Lrrc19 ENSRNOG00000022225 ENSRNOT00000037206 2 1 1 80 5 113620115 113621069 AGGCTTCTGAAACTGAAGTC 58 113620054 113620073 TAACATTGCTACTGATGCCC 58 NA Rattus norvegicus 81 Usp38 ENSRNOG00000026880 ENSRNOT00000035084 2 1 1 80 19 30687690 30687712 GTCTTATTAACCTGGGAAACACG 60 30687749 30691479 CTTGTCTTCTGAACTCTGTAGC 59 NA Rattus norvegicus 81 Pyroxd2 ENSRNOG00000015807 ENSRNOT00000021257 3 1 1 80 1 261967339 261967358 CTGAACTGTGAAGACACCCT 60 261965824 261967299 AATCATAGGTCTTTGGGAAGGT 59 NA Rattus norvegicus 81 Mmd2 ENSRNOG00000001113 ENSRNOT00000060608 1 1 1 80 12 14056780 14062135 TATGCTCCTTGGCTGAACC 60 14062177 14062197 AATAGAGGCCATGATCCAGAC 60 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866,ENSRNOT00000057407 2 2 2 80 14 85264255 85264274 CCAAGGTCAACTATGTGGTC 58 85264317 85264952 CACTCTCGTACTTGTTGGG 58 NA Rattus norvegicus 81 LOC500124 ENSRNOG00000010594 ENSRNOT00000014331 2 1 1 80 4 80358971 80358994 GAATAAGAAGAGTGACCTGTATGG 59 80354398 80357066 GATGAGCAGATTTCTCCTACTG 59 NA Rattus norvegicus 81 Adgrf3 ENSRNOG00000024766 ENSRNOT00000032829 2 1 1 80 6 27538121 27538140 TTCCAGACGTCCAATGAGAG 60 27538180 27539836 GATGCTTTCATACTCACCTGTC 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040,ENSRNOT00000021703 1 2 2 80 17 53403033 53403052 GTCAATGGATCTCACAGAGG 58 53403092 53439121 GCAGATCTTAGTTTCAGATTCC 57 NA Rattus norvegicus 81 Snx8 ENSRNOG00000001258 ENSRNOT00000001696 3 1 1 83 12 16385120 16385138 GTCCATGTCTACCTGCCTC 60 16385185 16388195 CTTGCTCATCTCCTTGTGC 59 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517,ENSRNOT00000077532 1 2 2 80 9 12640633 12640652 GGAGTAGTCCAAATGCTGAG 58 12640692 12641906 GAGGATATGCCTGAACATACTG 59 NA Rattus norvegicus 81 Adcy5 ENSRNOG00000002229 ENSRNOT00000049180 1 1 1 80 11 68701486 68701505 AGCTAGAGGCCAACAATGAG 60 68700622 68701448 CACTGATGATCTCATCAAAGTCTG 60 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 2 2 2 80 1 101898810 101899045 AAGGCACACCTGAAGAGAC 60 101899088 101899107 TTACATCACAGCCTGACTGG 60 NA Rattus norvegicus 81 Kcnk15 ENSRNOG00000010816 ENSRNOT00000014411 3 1 1 86 3 160232241 160232260 CTTTCTACTTCGCCATCACG 59 160236143 160236161 ACATGCAGAACACTTTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1106 ENSRNOG00000033022 ENSRNOT00000048039 2 1 1 60 7 139978438 139978459 TTCATCAATATCCTTGTCGCTC 59 139978399 139978419 AGTGGTGAATATTCTGAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000025451 3 1 2 166 10 14853756 14853774 TGCCTAACTGCGAAGTACC 60 14848901 14848920 TATGGTTACCACTGGAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tgs1 ENSRNOG00000008156 ENSRNOT00000010783 2 1 1 80 5 16418869 16418888 AACTCATGAGAAGTATGGGC 57 16418931 16419205 TTGCATTCATGGACACCTC 58 NA Rattus norvegicus 81 RGD1561151 ENSRNOG00000034183 ENSRNOT00000042552 2 1 1 93 X 96667876 96668815 AAAGTGAAGACACAAGCAGG 59 96668871 96668889 CAAGGCCTCTTAAGCAGAG 58 NA Rattus norvegicus 81 AABR07040288.1 ENSRNOG00000047560 ENSRNOT00000049969 3 1 1 61 X 96991681 96991700 GTTTCTTGGGTTCTTGTTGC 58 96991835 96991853 ACTGGGTCATCTGGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235,ENSRNOT00000051028 2 2 2 80 5 99517800 99517818 AGAAGAAACTCCAGCACCT 59 99514253 99517757 GAAGCATCAACTCGCATCTC 60 NA Rattus norvegicus 81 LOC681195 ENSRNOG00000031560 ENSRNOT00000048373 3 1 1 60 10 72556511 72556532 TCGGTATATGTTCTCTAGACCT 58 72556472 72556490 CATGTATGTGGCCAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Furin ENSRNOG00000011352 ENSRNOT00000015521 1 1 1 80 1 142191756 142192448 ATGAATGACAACAGGCACG 59 142191694 142191713 TACACCTACACCACAGACAC 59 NA Rattus norvegicus 81 RGD1309779 ENSRNOG00000008340 ENSRNOT00000066106 3 1 1 82 8 68308521 68312547 GTCATCAACATGGGTATTCCA 58 68308459 68308479 CTGGTATGAACAGTCTCTGTG 58 NA Rattus norvegicus 81 Crbn ENSRNOG00000006534 ENSRNOT00000008873 3 1 1 80 4 138881226 138881245 AGAAGTCAGTATGGTTCGGA 58 138880508 138881185 TCCCTTTCTTGCACATTACTG 59 NA Rattus norvegicus 81 Tfap2e ENSRNOG00000027595 ENSRNOT00000038248 3 1 1 113 5 144744823 144744841 GAGACTGAGTTTCCAGCCA 59 144741749 144744747 CTTACAGATCTGCTTGGCAG 59 NA Rattus norvegicus 81 Slc35b3 ENSRNOG00000016174 ENSRNOT00000021669 1 1 1 80 17 26494809 26497730 TTAATCTGACAGGTGTGATGC 59 26497771 26497790 TCATAGCTTTCTCCTGAACG 58 NA Rattus norvegicus 81 Rpl13a ENSRNOG00000020618 ENSRNOT00000027976 1 1 1 80 1 101121021 101121269 CTACCAGAAAGTTTGCTTACCT 58 101120962 101120980 CCTCCAGAGTAGCTGTCAC 59 NA Rattus norvegicus 81 Sox13 ENSRNOG00000028353 ENSRNOT00000032244 2 1 1 81 13 50470755 50470858 CTTACAGGAAGTTGTTCCAGC 59 50470901 50470919 TTCCACAGAGCTTCTTCCC 59 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 3 2 2 80 15 37720362 37725216 GGAACGTGAAAGGAAAGCC 60 37725260 37725278 AAGGAGGCTTCGATCACAG 60 NA Rattus norvegicus 81 Mis18bp1 ENSRNOG00000023093 ENSRNOT00000091202 3 1 1 80 6 86910808 86910826 GGCCAACCTCAAAGAAAGC 60 86907851 86910766 TTCCTGTAGCTTGACTACCTG 59 NA Rattus norvegicus 81 Smad3 ENSRNOG00000008620 ENSRNOT00000039730 3 1 1 80 8 68575401 68575419 GTCTACCAGTTGACTCGCA 60 68573198 68575359 CACTGTCTGTCTCCTGTACTC 60 NA Rattus norvegicus 81 Vom1r104 ENSRNOG00000031140 ENSRNOT00000049591 3 1 1 60 4 121811043 121811063 CATGTTCATTAGCAGTCACCT 58 121811003 121811022 ATTCGTGGTCAAATTGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F11r ENSRNOG00000004414 ENSRNOT00000006141 1 1 1 80 13 89846698 89846899 AGATCACAGTTCCCTATGCAG 60 89846941 89846959 CATTGTCTTTCCGGGTCAC 59 NA Rattus norvegicus 81 Olr1313 ENSRNOG00000031942 ENSRNOT00000043988 3 1 1 60 8 43409454 43409472 AACAATCTTGTGACACCGA 57 43409494 43409514 TCACATCCTTATTCCTCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r97 ENSRNOG00000060112 ENSRNOT00000077949 1 1 1 60 4 121900071 121900091 TAGGATGACATTCAAGGATGG 57 121900110 121900131 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919,ENSRNOT00000043448 3 2 2 80 10 64994915 64994934 GGCACAGATGAATGATCTCC 59 64994432 64994872 AGAGCTTGTAGCTTCTCCT 58 NA Rattus norvegicus 81 Cdr2 ENSRNOG00000017260 ENSRNOT00000023189 3 1 1 80 1 190901420 190914465 GACCTCCAGCAAGATCTCC 60 190901358 190901379 AAGAGAATCCTCCAACTCTGTG 60 NA Rattus norvegicus 81 Ggh ENSRNOG00000007351 ENSRNOT00000009758 3 1 1 80 5 34044365 34044383 AGATTCTACATTGCTGCGT 57 34044426 34046663 ATTAAGGTCGAGCCTTATGG 57 NA Rattus norvegicus 81 Rn60_5_0815.3 ENSRNOG00000050682 ENSRNOT00000052175 1 1 1 80 5 77366874 77367244 CCTCTATAGTAGAACAAAGGATCTG 58 77366818 77366837 CTAGTGATTACATGCGCCTC 59 NA Rattus norvegicus 81 RGD1560821 ENSRNOG00000023733 ENSRNOT00000034329 3 1 1 90 X 77885616 77885634 TACAAGATCTACCCGGGAC 58 77885796 77885814 ATGCGGACTCACATTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Cybrd1 ENSRNOG00000009620 ENSRNOT00000012942 3 1 1 86 3 57730338 57742005 CATCCAACAGCTTGTTGTAGG 60 57742053 57742071 ACATGTATGGGCATGACGA 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355,ENSRNOT00000013621,ENSRNOT00000080788,ENSRNOT00000079513 2 4 4 80 4 152473329 152475503 TAATTCAGACCCAGCAACC 57 152473267 152473287 GTGTCACTGGAATAGTCTCTG 58 NA Rattus norvegicus 81 Ap3s1 ENSRNOG00000003829 ENSRNOT00000064116 3 1 1 80 18 40732629 40755219 AGTTCTACCAGCCCTATAGTG 59 40755261 40755279 TCTCGTCTCGCTTAGACAC 59 NA Rattus norvegicus 81 RT1-M1-4 ENSRNOG00000027873 ENSRNOT00000038626 3 1 1 90 20 2390419 2390437 GGCCCTGAAAGATATTCGG 58 2390096 2390366 TGATATCCTGGACTCACCAG 58 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 3 3 3 81 4 7133352 7133591 TTACCATCAGCACTTACAGG 57 7133635 7133653 CTTGATCTCTGGGTAGCAC 57 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000085439,ENSRNOT00000066691 1 2 2 81 1 219311446 219311464 CCAGAGTTGGAAGGAGGAG 59 219311266 219311401 GATCTGCCCAAACAGACAG 59 NA Rattus norvegicus 81 LOC100359498 ENSRNOG00000038678 ENSRNOT00000059047 3 1 1 60 14 78741367 78741386 TGCCAAATTCTGAAGCAACC 60 78741409 78741427 CAGCATCACACGGATTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 2 2 2 80 2 237801378 237801517 ATTGCTTGAAGACGACCAG 58 237801561 237801579 ATTAAAGGCAGGGAAGCAG 58 NA Rattus norvegicus 81 RGD1304963 ENSRNOG00000008942 ENSRNOT00000011832 1 1 1 68 6 23341385 23341403 CAGACTGGGAATCCCATCC 60 23345222 23345240 GTTCTTGCTTGGCGTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Chmp2b ENSRNOG00000040257 ENSRNOT00000000904 2 1 1 80 11 2667126 2667145 GATGATGAAGAGGAAAGCCA 58 2666890 2667083 TTTGGCCATCTTTCCAGAG 58 NA Rattus norvegicus 81 Cyp2c12 ENSRNOG00000047945 ENSRNOT00000015801 1 1 1 80 1 258731876 258731894 GACATCAAGCTTAACGCTG 57 258725476 258731835 ATCTCTTCCTGGACTTTATCTG 57 NA Rattus norvegicus 81 Cyp2c12 ENSRNOG00000047945 ENSRNOT00000015801 3 1 1 81 1 258716809 258725315 ATACCCAAGGGAACAGCAG 59 258716746 258716764 CAAACATCTCTGGGTTGGG 59 NA Rattus norvegicus 81 Mrps7 ENSRNOG00000003797 ENSRNOT00000005089 3 1 1 81 10 104157825 104158363 GGTCATTTCTACCAGGTCCC 60 104158407 104158425 GGCACTCTGTGATCATCCA 60 NA Rattus norvegicus 81 Ostc ENSRNOG00000023322 ENSRNOT00000037393 2 1 1 80 2 235823817 235826588 GGCTTACAGAGTAAACGGAC 58 235823756 235823774 ATGAAACCTAAGCCTCCCA 58 NA Rattus norvegicus 81 Hmx1 ENSRNOG00000009154 ENSRNOT00000012304 2 1 1 274 14 80541696 80543980 TCTGAGTCCTGACACAAGC 59 80541440 80541458 GATCGAAAGTGGACTCGAG 58 NA DesignRelaxed Rattus norvegicus 81 LOC257643 ENSRNOG00000004858 ENSRNOT00000006555 3 1 1 67 3 143112414 143112433 AATTGCCCATTGCTACAAGG 59 143115908 143115926 GGTCGTGCATCTACTTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r26 ENSRNOG00000032657 ENSRNOT00000048309 3 1 1 60 14 62309941 62309961 CATTATATTCACAGCCACCAC 57 62309983 62310001 TACACGTAGCTCTGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd33 ENSRNOG00000037331 ENSRNOT00000047473 2 1 1 80 1 98399620 98399638 TGTCTGGTGACCTTCTCTG 59 98399681 98401594 CATCTGGTCTGATTTCCAGG 58 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071,ENSRNOT00000017042 1 2 2 80 10 64745063 64745081 TAATCCAAGGAGGGTTGCA 59 64745125 64749380 TCACCGCAATCCTATTTGG 58 NA Rattus norvegicus 81 Phospho2 ENSRNOG00000007979 ENSRNOT00000010489 3 1 1 89 3 56031047 56031065 AGGCTGGGTTTCTACACTG 59 56031550 56033442 GGAACGAAGACTTCTTAATTCCAG 60 NA InUTR Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151,ENSRNOT00000034495 3 2 2 80 5 17650791 17650809 GAGGTACCAGCAGAAAGTG 58 17649620 17650750 ATACTTTCGAAGATCCTCTGTG 58 NA Rattus norvegicus 81 Gh1 ENSRNOG00000011207 ENSRNOT00000015818 1 1 1 81 10 94486865 94487044 AGAGAACTGACATGGAATTGC 59 94486804 94486822 ATCCTGCTGAGAAACTGCA 59 NA Rattus norvegicus 81 Mir183 ENSRNOG00000035451 ENSRNOT00000053574 2 1 1 60 4 57463619 57463642 GTAGAATTCACTGTGAACAGTCTC 60 57463582 57463600 TCTGCTCTGTTTATGGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir183 ENSRNOG00000035451 ENSRNOT00000053574 3 1 1 60 4 57463647 57463665 CTCCTGTCCTGTGTATGGC 60 57463605 57463625 GTAATTCACTGACCGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450,ENSRNOT00000018440 3 2 2 80 15 52377676 52378179 CAGAAATCCTCAAAGCTGTACC 59 52377617 52377636 TATGAAGACACTCAGCACCA 59 NA Rattus norvegicus 81 Cmtm5 ENSRNOG00000016828 ENSRNOT00000022664 2 1 1 91 15 33601592 33601610 GTTCTTCATCACACTGGCC 59 33601665 33602162 GGAGGAAGTCCAGACAAGG 59 NA Rattus norvegicus 81 AC097890.1 ENSRNOG00000015772 ENSRNOT00000021149 3 1 1 88 18 51219733 51219753 GAACATACCATACTGTGCGC 60 51219804 51219822 GACGTTGAGTTGGCTTTGG 60 NA Rattus norvegicus 81 Vom1r92 ENSRNOG00000057461 ENSRNOT00000087069 2 1 1 60 4 121760914 121760935 CTCTACATTGTGTCTTTGTCCC 59 121760950 121760974 CTATGAGTCCCATAGTTATAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1417.1 ENSRNOG00000051125 ENSRNOT00000075973 1 1 1 60 2 122019910 122019929 TGAGAATCCAGATGAAGCAG 57 122019952 122019970 GCCATCAATTTGTCCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr831 ENSRNOG00000050429 ENSRNOT00000052024 2 1 1 60 4 148690434 148690453 GATCCACCTCTCCTGTTCTG 60 148690393 148690411 CAAAGCAAGGGCAAATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566265 ENSRNOG00000002323 ENSRNOT00000003188 3 1 1 80 X 78880530 78880901 GTAACAATGGGCAAGGTGAC 60 78880469 78880489 CTCCAGGTTCATACTCCTCAG 59 NA Rattus norvegicus 81 Nlk ENSRNOG00000008704 ENSRNOT00000011726 1 1 1 80 10 65844598 65844619 GAACAGCAGAAAGGAAACAGAG 60 65842070 65844558 GACGGTGGAACTGATAAAGC 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 3 4 7 82 20 2517188 2517356 AATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 Bles03 ENSRNOG00000020551 ENSRNOT00000027869 1 1 1 125 1 220806793 220807469 GGATGGAACCAAATGAAGAGC 60 220807556 220807574 CATCAAATACCAGCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Nmur1 ENSRNOG00000018521 ENSRNOT00000025024 1 1 1 80 9 93403684 93404037 AAGATGCTAATTGCTCTGGT 57 93403623 93403642 CACCATACTCCACATGAGAC 58 NA Rattus norvegicus 81 Prr22 ENSRNOG00000047295 ENSRNOT00000075201 1 1 1 167 9 10288672 10288775 CACTGTAGCCAATGCTAACC 59 10288099 10288117 TTGTACAGGGATGACTGGC 59 NA Rattus norvegicus 81 Prr22 ENSRNOG00000047295 ENSRNOT00000075201 2 1 1 169 9 10288672 10288775 CACTGTAGCCAATGCTAACC 59 10288097 10288116 CCTTGTACAGGGATGACTGG 60 NA Rattus norvegicus 81 Rab36 ENSRNOG00000001311 ENSRNOT00000001772 2 1 1 80 20 14563562 14565213 GCCTCATTCACAGGTTATGC 59 14563501 14563519 AGCGCTCGATTTCAAAGTC 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 2 4 4 80 1 24189419 24189437 GGCCTTCACTTCTCTTTCC 58 24189087 24189375 ATGGTAGAACAGCTCTCCG 59 NA Rattus norvegicus 81 Col8a2 ENSRNOG00000010841 ENSRNOT00000014388 2 1 1 82 5 144330607 144330625 GGTAAAGTATGTGCAGCCC 59 144330671 144331269 GAGGCATTTCCAGGTACTG 58 NA Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 2 1 1 60 18 40726988 40727007 GCACTCATCGACTTCATCAG 59 40724746 40726967 AAATAAACAACTGCTCCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 2 2 2 80 13 41706956 41706977 AGGAATTCTCCATTGATGTTGG 59 41699659 41706918 AATCTGGATTAGCAAACTCTGG 59 NA Rattus norvegicus 81 Zfp667 ENSRNOG00000033906 ENSRNOT00000063956 3 1 1 80 1 71283059 71283078 TGTTGGAGAAAGGGAAAGCA 60 71273092 71283021 TCTCATCCTTAGACCCTAATTCAG 59 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 2 1 1 64 9 65789156 65789174 CCTCATCTCCGGAAGTCTG 59 65784832 65789131 TCATGTATAGTTCTCCTTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 H6pd ENSRNOG00000017523 ENSRNOT00000023543 1 1 1 95 5 167003389 167003407 GTACCAGGCCTATAGTGGG 59 167002289 167003330 ATGTGGACAAGGACACCTG 60 NA Rattus norvegicus 81 Mad1l1 ENSRNOG00000001265 ENSRNOT00000001709 2 1 1 80 12 16430249 16432371 AGGAGCAGAAGATTAAGGACC 59 16432411 16432431 CAGATTTCATGCTCTTCACCA 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 2 2 2 81 14 112940145 112945955 CGAGGGCTTAAGGATATTAACC 59 112940085 112940104 GATCATCGTCCAGGAAACAG 59 NA Rattus norvegicus 81 Fbxw5 ENSRNOG00000028674 ENSRNOT00000034089 1 1 1 80 3 2728381 2728698 CTGCACAGTGAAGATCTGG 58 2728741 2728760 TAACTCCAGTTGTATGGCCT 59 NA Rattus norvegicus 81 Farp2 ENSRNOG00000018051 ENSRNOT00000024440 3 1 1 80 9 100723043 100723064 TGGAAGAACTCAGAAACAACTG 59 100723105 100724043 TTACTGTGCCGTCTTTCGT 60 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 2 2 3 80 18 56444954 56446253 ATCTCCCTAGGACAAAGCA 58 56446295 56446315 AGACATGACAGATATACAGGC 57 NA Rattus norvegicus 81 Olr1874 ENSRNOG00000046620 ENSRNOT00000028572 2 1 1 60 1 228262348 228262368 GGTTTACACCTTCATCACTCC 59 228262308 228262326 TTCTCTGTTCCTCATGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 2 1 1 87 9 12406836 12409468 GGACCTGACAGCTACTCAG 59 12409516 12409537 TGTTTCCAGAACTACAATCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Olr44 ENSRNOG00000018512 ENSRNOT00000024965 1 1 1 60 1 167732464 167732483 GCCCAGATGTTCTTTATCCA 58 167732423 167732443 CCATTGATAACAGGATGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256,ENSRNOT00000012655 2 2 2 80 4 84439755 84439774 CCACACTGGTGTGAATACTG 59 84439814 84443576 GTTTAACCCACAATCTGAACAC 58 NA Rattus norvegicus 81 Ptpn4 ENSRNOG00000002625 ENSRNOT00000003568 3 1 1 80 13 35719729 35719748 CAGCAAGATCTAGTCAACCA 57 35718260 35719686 AATGCCACCATTAGGAGTG 58 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 2 2 4 175 15 36823465 36824067 GAAGTCGTTGAGGTCTCTG 58 36825286 36825304 TGTGCTGCTATCACAAAGG 58 NA Rattus norvegicus 81 Hoxb1 ENSRNOG00000008506 ENSRNOT00000011416 3 1 1 90 10 84214842 84214860 CATCTTGCTCGTCAGAACC 59 84214913 84215368 GACACCTTTGCTGTCTTAGG 59 NA Rattus norvegicus 81 Kansl1l ENSRNOG00000028149 ENSRNOT00000067589 3 1 1 80 9 73766952 73767701 ATAGAGAAACAGAGTGCACAG 58 73766892 73766910 GGGTGATGAAGTTGGAGAC 58 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 2 2 2 94 1 101379417 101379562 CTAGAGTGAACTATGACACAACAG 59 101375211 101375231 GCGTTTACTGTAGACCATGTG 59 NA Rattus norvegicus 81 Prickle2 ENSRNOG00000012364 ENSRNOT00000016628 1 1 1 80 4 124289190 124298294 GTGCCCAACATATAGGAATTGAC 60 124289132 124289150 AGCAGAAACAGTTCTCCGT 59 NA Rattus norvegicus 81 Ivl ENSRNOG00000009314 ENSRNOT00000012343 1 1 1 80 2 192762570 192762589 AGCAGCATCAAGAGACTCAG 60 192762182 192762529 GATCCAGTACCATATCTGGCT 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160,ENSRNOT00000020204 1 4 7 80 17 57050947 57050966 AGGTCCAGGGAGTAATTCAG 59 57051007 57059809 CAATTGTTGCTACCTGAACAG 58 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310,ENSRNOT00000005905 3 2 2 82 6 48756735 48760646 CCTCCAGAAATTCTTGCCA 58 48760692 48760710 TTGCTATTCACATGCCCTC 58 NA Rattus norvegicus 81 Gpr55 ENSRNOG00000017521 ENSRNOT00000023546 2 1 1 60 9 92963453 92963473 CCTCCCATTCAAGATGATCCT 59 92963413 92963431 TGTGCAGAAGACCAGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc64b ENSRNOG00000003457 ENSRNOT00000004638 2 1 1 81 10 12986332 12986434 AGGCAGAGAATCAGATGCT 59 12986478 12986497 CCTTTGTCCACTTCTTCACG 59 NA Rattus norvegicus 81 Olr823 ENSRNOG00000013247 ENSRNOT00000017689 1 1 1 60 4 148477153 148477172 TGTACCTCCTCCATTATGCC 59 148477192 148477213 AGATAGGGTTTCTCTTTGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem163 ENSRNOG00000003769 ENSRNOT00000005006 3 1 1 80 13 44193954 44193978 CTTCTGTCATCTATATGCATAGTGG 59 44176255 44193917 CAGGAAATCGTCCACTTCAG 59 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 1 2 2 80 1 214180366 214180581 GATCCCACTATAGAGGACTCC 58 214180306 214180325 TGCTGTGTCTAAGATGTCCA 59 NA Rattus norvegicus 81 Mtpap ENSRNOG00000016578 ENSRNOT00000022462 3 1 1 82 17 56057609 56058159 TGACTGCCAACAATAGTATTGC 59 56057548 56057571 CAAAGCTCTTACTCTTGAATCCAG 60 NA Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000061166 1 1 2 82 2 30666586 30666605 CACTAGGCAAAGAACTTGCA 59 30666650 30674191 ATCGTACAAGTGCCCTTCC 60 NA Rattus norvegicus 81 Tmem64 ENSRNOG00000007426 ENSRNOT00000009759 2 1 1 83 5 28865058 28865077 TACGGACGATGGAAGATGTC 59 28865120 28867054 GGCCTATGCTGATAACAATCTG 59 NA Rattus norvegicus 81 Hoxb7 ENSRNOG00000007611 ENSRNOT00000031035 2 1 1 142 10 84135514 84135532 CCTTTGAGCAGAACCTCTC 58 84135638 84137862 CTTTCGTTCAGTCCCTGAG 58 NA Rattus norvegicus 81 Olr413 ENSRNOG00000047478 ENSRNOT00000046877 3 1 1 60 3 20879437 20879460 CTGTGGTATCTCTGTATTATGGTG 59 20879477 20879497 GTGCTGGATGAAGGTATAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoh ENSRNOG00000003566 ENSRNOT00000004756 1 1 1 80 10 96642086 96642105 AATGGAGTTGTACGCTACAC 58 96642147 96644263 CCCGTTCAGATAATACCCAG 58 NA Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 3 2 2 80 10 43874589 43875321 CAACAAGCCCATTAATGTGTC 58 43875363 43875381 GTGCCAAGTTCACTGTAGC 59 NA Rattus norvegicus 81 AABR07059215.1 ENSRNOG00000031486 ENSRNOT00000046248 1 1 1 84 4 9043573 9060455 TGTAGTAGCAACAACAGCA 57 9043507 9043526 TGTTATTGCTGTTGTTGCTG 58 NA Rattus norvegicus 81 Cacnb3 ENSRNOG00000054274 ENSRNOT00000081206 2 1 1 80 7 140322698 140322716 AAGTCCCAGATGAAGCACC 60 140322758 140322878 CACATCAAATGACTCAGGTGG 59 NA Rattus norvegicus 81 Mdfi ENSRNOG00000014987 ENSRNOT00000020432 1 1 1 177 9 15179094 15179112 GACCACCTCTCAGAACCAG 59 15179253 15183651 CACAGCAATCTTCCTGAGC 59 NA Rattus norvegicus 81 Zdhhc15 ENSRNOG00000002751 ENSRNOT00000003714 3 1 1 80 X 75500259 75500278 TTGTGTTCTTTGCATGGACC 59 75491860 75500220 TATAGGACAAGTGGAACTTCTGG 60 NA Rattus norvegicus 81 Olr399 ENSRNOG00000060108 ENSRNOT00000089297 2 1 1 60 3 15856731 15856750 CCTTATCCTCTGCCAATTCC 58 15856770 15856791 CTAAAGTGAGATAGGTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam204a ENSRNOG00000009830 ENSRNOT00000013031 1 1 1 86 1 281370484 281370685 AAAGGAGTCTTCCAGCGAG 59 281370416 281370438 GGTTCAAATCTATCATTGGCTCC 60 NA Rattus norvegicus 81 Cdhr5 ENSRNOG00000017762 ENSRNOT00000044238 2 1 1 80 1 214260368 214260529 GAATATAATGTATCGGAGGACACC 59 214260311 214260329 TTTGTCAGCATCTGTAGCC 58 NA Rattus norvegicus 81 Ssbp4 ENSRNOG00000019698 ENSRNOT00000026713 3 1 1 80 16 20587466 20587685 ATCCATGAACATGGGTCCG 60 20587817 20587836 GGAGATGAGGAAGAGTACGG 59 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 3 2 2 80 2 149547638 149547657 TCTTTCTTCCTTGTGAGGCT 59 149545978 149547599 GGGATATTTCAAGTCCTGATGAG 59 NA Rattus norvegicus 81 LOC688812 ENSRNOG00000054096 ENSRNOT00000084052 3 1 1 88 12 4113207 4113227 CTAACCAACAGTGCTTCTCTG 59 4113272 4113297 GACATTACTGAGTAAAGTGTCCTG 59 NA Rattus norvegicus 81 B3gat3 ENSRNOG00000019804 ENSRNOT00000026875 3 1 1 82 1 225125670 225125690 CCTGGAAAGTAGTCTCCTGAG 59 225125733 225126102 ACACCAGTACCTGAGTACAG 59 NA Rattus norvegicus 81 RGD1559622 ENSRNOG00000025219 ENSRNOT00000035057 3 1 1 83 2 149720666 149722362 TAGGAATAGAATACAGACTTGCTCC 60 149720607 149720627 GGAGAAAGAACTTGGTTGCAG 60 NA Rattus norvegicus 81 Olr1364 ENSRNOG00000048685 ENSRNOT00000060994 2 1 1 60 10 12385347 12385367 AACCCTTTCATCTATAGCCTG 57 12385307 12385326 TGAGCAGTTTCCTTAAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Commd6 ENSRNOG00000038012 ENSRNOT00000057830 2 1 1 106 15 86139105 86139124 CTCTCAAGTATCCGTACGTG 58 86136565 86139039 GTAGAAATTCTGAAACTGTGGG 57 NA Rattus norvegicus 81 Tnfrsf12a ENSRNOG00000003546 ENSRNOT00000004842 1 1 1 66 10 12996623 12996641 GGTTTCCTGGTCTGGAGAC 60 12996483 12996501 CACCAGTCTCCTCTATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 2 2 2 80 3 3357077 3357096 TACATGATCACCATCACCAG 57 3357137 3357281 AGTTACCTTCATAGCACAGAG 57 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 2 2 3 80 3 150050288 150050461 GATCCTCTGATACAGGGCG 59 150050226 150050245 GGTCTATGAGCTCTTGGAGG 59 NA Rattus norvegicus 81 LOC684499 ENSRNOG00000032728 ENSRNOT00000040211 3 1 1 96 11 67332860 67336700 CTTCATTAAGATGGATGTAGGGTG 59 67336755 67336773 CCGGTAACCATGAAGTTCC 58 NA Rattus norvegicus 81 Irf3 ENSRNOG00000043388 ENSRNOT00000027786 1 1 1 80 1 100994869 100994889 ACTTTGTACATCTGGACACCT 59 100994928 100995100 GTAATTCCAAGAGGTCTTCCTG 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 2 3 3 80 20 20583971 20583992 CCATGGATCTCAAGAAGTACCT 59 20584029 20586518 GGTACAAGTAACTCTTAACGAGC 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 3 3 3 80 20 20582930 20583919 CATCCAAATATAGTCAGCCTGC 59 20583960 20583978 ATCCATGGACAGGAACTCG 59 NA Rattus norvegicus 81 Amer1 ENSRNOG00000007984 ENSRNOT00000051132 1 1 1 179 X 64702320 64702338 GAGGTTCCAGCTCAGATCC 60 64689937 64689958 GTTTCATCCTGTTGAATCTCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pitpnm1 ENSRNOG00000018553 ENSRNOT00000025084 2 1 1 80 1 219352115 219353466 ATCCATGATGTAGGTCTGCG 60 219353507 219353527 CAGTTCAATCCACTCATCCTG 59 NA Rattus norvegicus 81 Zfp800 ENSRNOG00000007662 ENSRNOT00000010223 3 1 1 80 4 55521408 55525964 GCTGCGAACCAGTTTATATCC 60 55521348 55521369 GAATACCGGATTTGGATGTCTG 59 NA Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000034124 3 1 2 80 12 2603699 2604158 CACATACAACAGGAGCAGC 59 2603637 2603658 GGATGATGCATACATGGATGTG 60 NA Rattus norvegicus 81 RGD1562431 ENSRNOG00000032306 ENSRNOT00000049479 3 1 1 94 9 76441031 76441049 TGTCCCTGCAGAAAGACAG 60 76441130 76441148 GTGGTGGTACCTGGAAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Pxmp4 ENSRNOG00000016975 ENSRNOT00000022914 2 1 1 81 3 150092570 150098074 AATAGCCAGATCAACATGTACC 58 150092510 150092528 CAGGGATGTAGCCCTTCTC 59 NA Rattus norvegicus 81 AABR07054370.1 ENSRNOG00000046585 ENSRNOT00000072917 3 1 1 82 3 150188565 150188586 CAAGAAACAAGAGTTTCTGGAG 58 150188629 150221626 CCGTTCTCTTGTCTTTGGT 58 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000052623 ENSRNOT00000047242 2 1 1 60 10 44156475 44156495 TACTCACACCTCTGTTGAACC 60 44156435 44156456 GCCTCAGTGACATTCTTATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 3 2 2 65 1 81376270 81376289 AGATGATGAAGACCTTTCCC 57 81381493 81381511 TCCTCTTCCTCTTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Dirc2 ENSRNOG00000002240 ENSRNOT00000003048 2 1 1 80 11 68251968 68265438 TGCCTTTGACAACAGTGAC 59 68265479 68265500 CAAAGAATATAGGAACGCTGCT 59 NA Rattus norvegicus 81 Olr1456 ENSRNOG00000046792 ENSRNOT00000052167 1 1 1 60 10 44731169 44731192 GTCAGCATTCTATACTATCGTCAC 59 44731209 44731229 GTTCCGAAGACTGTAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2 ENSRNOG00000016325 ENSRNOT00000022233 2 1 1 80 3 80534383 80534546 CAGTAACCAGTTTGCTCCAG 59 80534322 80534341 TGTTAGTTGTCCACGTCTCC 60 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809,ENSRNOT00000003739,ENSRNOT00000083655 2 3 3 80 X 75178768 75178786 GTTTGCATTGGTAACCCTG 57 75178617 75178726 CTAAATCTAGTTCTCCACCGT 57 NA Rattus norvegicus 81 Snx29 ENSRNOG00000002294 ENSRNOT00000003150 2 1 1 80 10 4191359 4191377 CTAAATGAGCACTCCCTCG 58 4187317 4191318 CCAATCTTCATAGAATGTGCTG 58 NA Rattus norvegicus 81 Rn60_14_0866.3 ENSRNOG00000026873 ENSRNOT00000037005 3 1 1 60 14 85893439 85893457 CAGATGGTCACTGATGTCC 58 85893397 85893416 CCCGAATTTCTGTCTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 3 2 2 80 15 8746522 8746541 GTAGGTGGATGTTCTCAGAC 58 8746583 8749386 CATAGGACAAACCAGATGCA 58 NA Rattus norvegicus 81 Tas2r110 ENSRNOG00000050637 ENSRNOT00000040860 2 1 1 60 4 167130048 167130067 GAGACGAAGCACTCTTTCTG 59 167130007 167130028 GATGTGTATATGCTTGGATCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc12a4 ENSRNOG00000019651 ENSRNOT00000026730 1 1 1 80 19 37921646 37921915 TACTATCACTGGGCGTTGTC 60 37921585 37921603 TAGGGCGTAGTACCAGGAG 60 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242,ENSRNOT00000009552 3 2 2 80 3 92916945 92918780 TTACTCTTAAGCAAATGCCTGG 59 92916886 92916905 CTGAAATGTCAACAGAGGGC 59 NA Rattus norvegicus 81 Nek8 ENSRNOG00000012866 ENSRNOT00000017264 2 1 1 80 10 65426697 65426715 AGACTCATCCTTACACGGT 58 65426249 65426654 GTTCATCTGTGACTGATCGA 58 NA Rattus norvegicus 81 Slc51a ENSRNOG00000001765 ENSRNOT00000002405 2 1 1 80 11 71546626 71547121 AGGTCCCAAGTGATGAACTG 60 71547161 71547182 CTTTCGATAGTACATGCGTGTC 60 NA Rattus norvegicus 81 Spink13 ENSRNOG00000038793 ENSRNOT00000059276 2 1 1 68 18 57940848 57940866 ACAGGATCATCTTCTCCCT 57 57936541 57940817 GTGATCTGATAAGTGCTGCT 58 NA DesignRelaxed Rattus norvegicus 81 Rsad2 ENSRNOG00000007539 ENSRNOT00000010092 1 1 1 80 6 45663893 45667101 AAGGACTATGGAGACTATTTGGAC 60 45663836 45663857 ACGACCAATGAGAACATTAACC 59 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 3 1 1 62 15 57505577 57568089 TCTAAAGTATGTGTCTAGTAGACGG 59 57568109 57568127 TGGAAGCTACCTTGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382,ENSRNOT00000083264 1 3 3 80 7 107467355 107467816 CAGCCAACATCTTTGAGTACC 59 107467858 107467876 GCTTCAGAAAGGCCTTCTC 59 NA Rattus norvegicus 81 LOC100911204 ENSRNOG00000026378 ENSRNOT00000041727 1 1 1 83 3 112539157 112540208 GAAGAGAATGACAATACACAGAGG 59 112541442 112541460 GAGGTCCTGAAGAGGACTC 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 1 2 2 80 4 181084177 181084195 AATTGGGAATGGTGGTGTG 58 181084239 181086349 GGTCTTTCCCTTATGTGCC 58 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081029,ENSRNOT00000081594 2 3 3 80 8 107543675 107543693 GAATGAAGTGTACGCCAGG 59 107543735 107545518 GATGAACTGTCTAATCCCAGG 58 NA Rattus norvegicus 81 Olr771 ENSRNOG00000026885 ENSRNOT00000037906 1 1 1 60 3 102860150 102860169 GGTGTTGTTACTGGTGATGG 59 102860192 102860210 ATAGTGGAGTGGTTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdca2 ENSRNOG00000025302 ENSRNOT00000031163 2 1 1 80 15 44391917 44391938 CCATCTACTAAGACCTTTGTGC 59 44390537 44391880 GTTGTATCCCTTTCCATTCTCTG 59 NA Rattus norvegicus 81 Olr1162 ENSRNOG00000047533 ENSRNOT00000049132 2 1 1 60 8 20054906 20054927 TGGTGTCACAACTAACATTCTG 59 20054945 20054966 GGAACATCACAGAAGAAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst4 ENSRNOG00000009577 ENSRNOT00000012773 3 1 1 80 2 229486463 229486482 CAACGGTGATGGATGAAGTC 59 229486525 229493925 GAGGATCAAACGTCAGTGC 59 NA Rattus norvegicus 81 Olr121 ENSRNOG00000048603 ENSRNOT00000048499 3 1 1 60 1 168819336 168819356 AGCATATGGAATCTCTGTGGT 59 168819296 168819319 TGTCCCTATCATTCCTATATCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396,ENSRNOT00000081290 2 2 2 80 17 52410886 52410904 TTGATGCCAGACATCACGA 59 52386123 52410843 TAGATAAGGCAGAAGGCACG 60 NA Rattus norvegicus 81 Rfx1 ENSRNOG00000006049 ENSRNOT00000008104 3 1 1 80 19 25210887 25210907 CATGTACTACCTGATCGAGCA 60 25210949 25211047 AGGTTTGCAAACTCTCCCA 60 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170,ENSRNOT00000078776 1 2 2 80 8 47675228 47683045 AAGGCCGAGAAAGAGACTG 59 47683087 47683107 CTCAGCTTCGTCTTCAATCTC 59 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792,ENSRNOT00000091135,ENSRNOT00000029340 1 3 3 80 2 177862974 177862995 AGTTATCAAACAACGAAGGCTC 59 177861172 177862935 TTCAGATAATACCTCCCGCTC 59 NA Rattus norvegicus 81 Ezh2 ENSRNOG00000006048 ENSRNOT00000008149 2 1 1 80 4 77310742 77329337 GACTAGGGAGTGTTCAGTGAC 60 77310682 77310700 GATGCGACAGCATTTAGGG 59 NA Rattus norvegicus 81 AABR07072593.1 ENSRNOG00000056718 ENSRNOT00000080986 1 1 1 107 18 48129635 48129653 TCAAGGAGTTCCGGAACAG 59 48129543 48129564 CTCTCATCCCAGCCTTCAC 60 NA Rattus norvegicus 81 Sgol2 ENSRNOG00000027035 ENSRNOT00000029526 2 1 1 80 9 64903544 64905100 GCAGTCTTTCTGAGTTCCA 57 64905143 64905162 CAGGCTTGCATTGTTTACTG 58 NA Rattus norvegicus 81 LOC102549803 ENSRNOG00000045933 ENSRNOT00000075813 1 1 1 60 4 117575028 117575046 CTGACACTGCCTCATTCTC 58 117574986 117575006 ACACTAGGATTATGGTCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477,ENSRNOT00000066495 3 2 2 80 2 116059887 116064853 TAGCACCAGCTTCATATTCTC 58 116064895 116064913 TAGGAGGTGGTGAATGGAG 58 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 1 2 2 87 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529442 18529460 GTTCCTGTAGTTTCTGCCG 59 NA Rattus norvegicus 81 Irak4 ENSRNOG00000005965 ENSRNOT00000007932 3 1 1 80 7 135818839 135820551 AAAGTAATGGCCAAGTGTCAG 59 135820592 135820611 CACTAAGCACAGGTTGTCAC 59 NA Rattus norvegicus 81 Unk ENSRNOG00000006600 ENSRNOT00000009733 3 1 1 81 10 104601970 104601989 TATGCCTGTCCCTACTACCA 60 104602032 104602564 TTGGACATGGAGATGACCTG 60 NA Rattus norvegicus 81 Gal3st4 ENSRNOG00000001375 ENSRNOT00000001855 2 1 1 80 12 19590371 19590590 CATTCCAGAGGAGGCTACC 59 19590309 19590330 GTAGGCAAGACTTAACAGTTGG 59 NA Rattus norvegicus 81 Slc16a12 ENSRNOG00000021916 ENSRNOT00000030024 3 1 1 80 1 252987972 253000522 GTCACCAGGTGTATCTCCA 58 252987910 252987928 ATGGATCCATGCTGTTTGG 58 NA Rattus norvegicus 81 Mmp19 ENSRNOG00000006778 ENSRNOT00000008909 2 1 1 80 7 3216614 3216635 TCTTACTTCCTGTGACAGTCTC 59 3216673 3217124 CATACTGCAACAGGTAATCCAC 60 NA Rattus norvegicus 81 RGD1306519 ENSRNOG00000024928 ENSRNOT00000055648 1 1 1 80 2 228653565 228654070 ACATCTCAAATGAGGTTTCCC 58 228653505 228653525 AGCATAAAGCCATGTCTTCTC 59 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 2 2 2 80 17 54035548 54036080 TATCTACACTGTTCAGGAAGGC 60 54035489 54035510 TCCCGTATGTGATCTACAAGTC 60 NA Rattus norvegicus 81 Litaf ENSRNOG00000002520 ENSRNOT00000003412 1 1 1 65 10 4753727 4753745 CTTCGTACTACACCCAGCC 60 4757748 4757766 CATAAACCGTCTGCACTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025384 2 1 2 90 2 187349017 187349036 GAGGGCCAGATACTTGAGAG 59 187349089 187349371 GAGATCTACCTGCCTCCTG 59 NA Rattus norvegicus 81 Rptor ENSRNOG00000003821 ENSRNOT00000005337 3 1 1 80 10 109034813 109034833 TTCATTTGTGCCACTATGCAG 60 109034874 109043953 TTCAGGGATCTTCATGACCG 60 NA Rattus norvegicus 81 Amz2 ENSRNOG00000000246 ENSRNOT00000000263 1 1 1 80 10 97717968 97717988 TAAATGTCTGCCCTATCTGCT 59 97718029 97719798 TCACCAGGGCTTTGTATCTC 60 NA Rattus norvegicus 81 Gucy2f ENSRNOG00000019086 ENSRNOT00000046804 3 1 1 80 X 113391844 113391862 AACGGACTGAAGAACTGGA 59 113391046 113391800 ATTCAGCAACTGATGGTGG 58 NA Rattus norvegicus 81 AC103493.1 ENSRNOG00000050390 ENSRNOT00000074475 3 1 1 84 4 1710573 1710594 CTGGTTTGGATTGTCCAGAG 59 1710508 1710526 CCAATGTTTCCCACCACTG 59 NA Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 2 2 2 80 11 61670006 61672017 AATTACAGCTCAGCTCTATCCT 59 61672057 61672076 GATGAGGAAGATGTAGGCCA 59 NA Rattus norvegicus 81 Fech ENSRNOG00000018053 ENSRNOT00000024328 3 1 1 80 18 59964487 59969485 AACCAGAAAGGAGGAAGCC 60 59964425 59964445 AGTCTTGAACTTCTCCAAGGG 60 NA Rattus norvegicus 81 Cnrip1 ENSRNOG00000005326 ENSRNOT00000007104 1 1 1 80 14 100217809 100217827 TACAATCAAGCTGCTCACC 58 100217871 100220705 GAAATGTTCTCGACCTGCA 58 NA Rattus norvegicus 81 Mnx1 ENSRNOG00000046959 ENSRNOT00000072287 3 1 1 81 4 2377913 2377931 GCTCAACAAGTACCTGTCG 59 2377306 2377868 CCAAATCTTCACCTGGGTC 58 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 2 2 2 80 6 1442721 1442739 TACCGAGTTTGTTGGGAGG 59 1441005 1442679 GGTCTTGTATCGACTTGTGTC 59 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896,ENSRNOT00000060924 2 2 2 80 12 11229566 11230299 GACATGAAGAAGTCCCAGG 58 11230343 11230361 GTAGTCCAGCTTCTTGAGG 57 NA Rattus norvegicus 81 Jmjd4 ENSRNOG00000022438 ENSRNOT00000039012 2 1 1 81 10 45802663 45802681 AAGTCATACAGGAGCCTGG 59 45802726 45803532 GAGATGGTGTCTTCCAGGT 59 NA Rattus norvegicus 81 Naprt1 ENSRNOG00000007939 ENSRNOT00000010637 3 1 1 99 7 116923359 116923378 ATCTCTGGAAGAGTCCAGAG 58 116923189 116923298 CAATGCGACCTGGTATACAG 59 NA Rattus norvegicus 81 March4 ENSRNOG00000016472 ENSRNOT00000022076 3 1 1 95 9 79802928 79807851 AGAATCCTCTACAGTGGCAG 59 79802852 79802870 TACTGGCGATGAGGAAGAG 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 2 1 1 92 10 45528763 45534526 ATTTCCAGCCTGGAGAAGG 59 45528689 45528708 TGATTGTGGATCTCCTCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 3 2 2 81 1 80955066 80955957 GGCTCTCAGGAAGAAGGAG 59 80956002 80956020 AGTTCCTCAGGACAAAGGG 59 NA Rattus norvegicus 81 Cdh23 ENSRNOG00000033087 ENSRNOT00000048029 1 1 1 80 20 29860068 29860256 CTACAGGACCATACACAAGAG 58 29859916 29859935 TCCATGATGTCAATGAAGCC 58 NA Rattus norvegicus 81 Ncoa6 ENSRNOG00000018288 ENSRNOT00000024714 3 1 1 80 3 150930380 150930399 CCTTCACAGACTTTAGTCCC 58 150927289 150930337 ATTTGCCTCAAGTTCTGGT 57 NA Rattus norvegicus 81 Itfg1 ENSRNOG00000015843 ENSRNOT00000021711 3 1 1 80 19 22283884 22285934 AGGTGTCCTTGAAGAATTTCAG 59 22285974 22285993 GGACATCCATTTGTGAGTCC 59 NA Rattus norvegicus 81 Als2cr12 ENSRNOG00000024917 ENSRNOT00000038431 1 1 1 80 9 65678765 65680470 TGTACCAGGATAGCATTTACGA 59 65678706 65678726 CCATCTTCTCATCCTTCTCCC 60 NA Rattus norvegicus 81 AABR07000663.1 ENSRNOG00000056705 ENSRNOT00000091252 2 1 1 80 1 22332654 22332675 TGCCAAGTTGTCAATCAAGAC 60 22332712 22332735 GTAGAGGATGATCATAACAAGGGT 60 NA Rattus norvegicus 81 St6galnac1 ENSRNOG00000000251 ENSRNOT00000042321 2 1 1 80 10 105715437 105716056 TGACTACGTCTTCCGACTG 59 105715375 105715394 AAGCCATAGAAGGATGTCCG 60 NA Rattus norvegicus 81 Olr230 ENSRNOG00000019599 ENSRNOT00000026506 1 1 1 60 1 171179631 171179649 TATGCCATTGTCGGAACCA 59 171179673 171179691 AGGAACAAAGGATCAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655 3 1 2 86 13 91958407 91958425 GTTCTGTTGCTTCTGCCAC 60 91958472 91959719 TCTTCTGAGGCTTAACTTGAGG 60 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 3 2 2 80 7 143385720 143386378 ACCAGTGTAAGATCCAGGAG 59 143385659 143385677 CTGTGATCTCGGACTTGGT 59 NA Rattus norvegicus 81 Gpr142 ENSRNOG00000024446 ENSRNOT00000035963 3 1 1 128 10 103349222 103349240 ACAATACGACAGTGTGGAC 58 103349332 103350866 GTAGTCAGGACGTTGACAG 58 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000050532 ENSRNOT00000074397 1 1 1 60 17 35477427 35477447 AATACTCAGCAGTGTTAGAGG 57 35477469 35477487 TCATTCCTCTCGGCATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acot6 ENSRNOG00000029637 ENSRNOT00000058101 1 1 1 80 6 107585398 107585418 TATTTGAGCCAAGTGCATCTG 59 107585459 107589779 ATTTGGACCTTTCACCTGTG 58 NA Rattus norvegicus 81 C1ql2 ENSRNOG00000046863 ENSRNOT00000071305 3 1 1 109 13 36378894 36378912 TACCACATCCTCATGCGTG 60 36379568 36379586 TCATAATTCTGGTCCGCGT 59 NA DesignNoJunction Rattus norvegicus 81 Tex43 ENSRNOG00000023034 ENSRNOT00000039486 1 1 1 81 18 51680901 51680919 CAAGGGATGATCCCAACAC 58 51680961 51682773 CTTCTGCTTGCTTTAGATTGAC 58 NA Rattus norvegicus 81 Zfp496 ENSRNOG00000003129 ENSRNOT00000058308 2 1 1 80 10 45839725 45840167 ATGCCTCCAAATGAGTCTCC 60 45839664 45839682 GTCTGTCCACTCTGTGACC 60 NA Rattus norvegicus 81 Ago3 ENSRNOG00000034269 ENSRNOT00000042371 2 1 1 80 5 144385993 144386011 TGAAGTACCCACACCTTCC 59 144384734 144385955 CAATATTACAGACTTCTAGTGGCAG 60 NA Rattus norvegicus 81 Papln ENSRNOG00000009448 ENSRNOT00000012757 1 1 1 80 6 107264951 107265253 GCAGTAGTTTCCAAGGACC 58 107265297 107265315 AAACTGAGAGCTTCGACAC 58 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000081509 1 1 2 80 1 163551365 163553881 CCCTTCTAGTCAGCCATCG 60 163551303 163551322 GTGACTGAGCAACATGTTGG 60 NA Rattus norvegicus 81 Ldhb ENSRNOG00000013000 ENSRNOT00000017965 3 1 1 80 4 176707993 176710693 CAACCCAGTGGATATTCTTACC 59 176707934 176707953 TTGCATCCACTTCCAATCAC 59 NA Rattus norvegicus 81 Olr785 ENSRNOG00000045817 ENSRNOT00000049984 3 1 1 60 3 103224038 103224059 GCACAGATACATACAAACTGGA 59 103223999 103224017 CCCACAGACATGAATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prorsd1 ENSRNOG00000004145 ENSRNOT00000005504 3 1 1 124 14 113938953 113940212 ACATCCGGAGGTGTTTACAG 60 113938848 113938871 GAAGAACTGTGACTAACCAATAGC 60 NA Rattus norvegicus 81 Olr791 ENSRNOG00000045900 ENSRNOT00000074196 1 1 1 60 3 103447315 103447333 ACCTCTCCATTACCTGACC 58 103447273 103447293 GGCAATCACTACAAAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 1 2 2 80 1 72775294 72775448 TGGATCTGGTAAACACTCAC 57 72775491 72775509 CCTCAGGGAAGTTGAACTC 58 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 3 3 3 80 18 59988530 59988550 GTTTCCTGTGGAGATCAAGTC 59 59988166 59988490 ATCAACACATCCACAGATTCG 59 NA Rattus norvegicus 81 Smim1 ENSRNOG00000043193 ENSRNOT00000063779 2 1 1 87 5 171309497 171309763 TATAAGAGGATCTCCCAGAAGC 59 171309431 171309449 AGATGATCCAGAAGAGGGC 59 NA Rattus norvegicus 81 Dhrs13 ENSRNOG00000009673 ENSRNOT00000012825 3 1 1 113 10 65332887 65332905 TCATCTTCATGGCCTTGGA 59 65332653 65332810 AACTGATCCCTGCATTGTG 58 NA Rattus norvegicus 81 Ppp3r1 ENSRNOG00000043210 ENSRNOT00000067846 2 1 1 80 14 100356718 100357094 ACAGAAGTTGAGGTTCGCT 59 100357138 100357156 AACACCTGGAAGAGCTCTC 59 NA Rattus norvegicus 81 Eif2b4 ENSRNOG00000005301 ENSRNOT00000007763 2 1 1 80 6 26550210 26550229 TGCATCTCAGGCAATTTCAC 59 26550267 26550403 AGAGATGAGCATCCATATACTAGG 59 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 1 2 2 80 X 115633335 115633354 AACACCTTCTGTCCCAAGAG 60 115633006 115633292 GTCAGCATGACGTTCTGTG 59 NA Rattus norvegicus 81 Rasgrp4 ENSRNOG00000033744 ENSRNOT00000048677 1 1 1 80 1 88079690 88080614 GTTACCTGGTCAGGTACTGG 60 88080656 88080675 ACCGGTTTATGATTGCTTCC 59 NA Rattus norvegicus 81 Olr590 ENSRNOG00000049292 ENSRNOT00000073455 3 1 1 60 3 75958426 75958445 ATCCTTGTGATACCGATGCT 59 75958465 75958486 CTTTCACATCCTTGTTCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam9 ENSRNOG00000046915 ENSRNOT00000071271 2 1 1 60 1 78659460 78659481 GGAGTCCTCTTCTCTACTTCTC 59 78659501 78661845 GCAGGTTAAGAAGGAAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Rfc3 ENSRNOG00000001088 ENSRNOT00000001444 2 1 1 80 12 1464213 1464231 TCCAGGAGATGCTGAAGAC 59 1464272 1465889 TCAGTAACACCACTTTGAAGTC 59 NA Rattus norvegicus 81 Bcs1l ENSRNOG00000016754 ENSRNOT00000022632 2 1 1 81 9 81869868 81869886 ACCTTCAGCATGAAAGTGG 58 81869929 81870030 CCCTGATACCAAATGAAGTGG 59 NA Rattus norvegicus 81 Sp6 ENSRNOG00000023551 ENSRNOT00000038572 3 1 1 64 10 84958322 84958340 TCACAGGGCTATGAGTTGC 60 84958368 84958386 CTGTCACTTTCCAGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd40 ENSRNOG00000018488 ENSRNOT00000055148 1 1 1 80 3 161526716 161526734 GACTCAGGCGAATTCTCAG 58 161526778 161527030 AAGCCCTTGATTGAGTTCG 58 NA Rattus norvegicus 81 Acsl4 ENSRNOG00000019180 ENSRNOT00000026057 2 1 1 80 X 113623950 113625326 AAGTACAACTTTCCGCTTGTG 60 113623890 113623911 AGCCTCAGACTCATTTAATCCA 59 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 2 2 2 82 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505866 80505885 AGGGATGTGGTCTAGATGTG 59 NA Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000027846 2 1 2 80 16 21152803 21152822 GCCTTCATCGTGACTAACCT 60 21152862 21153862 CTCAAGCAAACTGTACAGTACC 59 NA Rattus norvegicus 81 Fbxo5 ENSRNOG00000024077 ENSRNOT00000029416 3 1 1 80 1 42462421 42462439 ATGTTCAACCCAGTCAACG 58 42462038 42462377 TCAATGTCTTTGCCACCTC 58 NA Rattus norvegicus 81 Vom1r4 ENSRNOG00000045921 ENSRNOT00000052208 3 1 1 60 1 86533736 86533759 GTTGTCATTCTCTATATGCACAGG 60 86533776 86533796 AGGAAACAGTGATGCTATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390,ENSRNOT00000082221 2 2 2 80 1 214494430 214498417 GAAACATGTAGGCCTCATTCAC 60 214494371 214494389 ATGACCAGAATGACCAGCA 59 NA Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076816 2 1 2 84 X 71272091 71278500 CCAGGGAGGTGTGAATGAG 60 71278548 71278566 CAATGGCTGTAGAATGCCG 59 NA InUTR Rattus norvegicus 81 Fcho1 ENSRNOG00000033912 ENSRNOT00000040464 2 1 1 80 16 20141275 20141747 ATCCTTTGACTCTGCCGAG 60 20141213 20141235 ACATAGAACTTTCTAGGCTCCTC 60 NA Rattus norvegicus 81 Usp44 ENSRNOG00000005637 ENSRNOT00000007465 3 1 1 80 7 34750874 34752699 GACCATTGTAACTCAAAGCGT 59 34752738 34752759 GCATATCATGAGCTGTTTCTGG 60 NA Rattus norvegicus 81 AABR07041078.1 ENSRNOG00000000620 ENSRNOT00000045110 3 1 1 80 X 118747165 118747185 CATAACCTCTCAGTTGGACCA 60 118747223 118748394 GTGGTTATGAAGTGGTCTAACTG 59 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 3 1 1 62 1 22431400 22431420 CCAAGGATCCTGTGTCAGG 60 22431356 22431376 AAGACTGCATAGAGGATGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Trim47 ENSRNOG00000008215 ENSRNOT00000010887 2 1 1 80 10 104655942 104656379 CTCAGAAGCTGATGTGGAG 58 104655880 104655899 TTGAGGAAATAATCCCTGGG 57 NA Rattus norvegicus 81 Iba57 ENSRNOG00000022725 ENSRNOT00000036940 2 1 1 87 10 45508263 45514528 GTGTATGGACTCCCAGAGTG 60 45508195 45508213 GGTACTTCTGTAGGGTGCC 60 NA Rattus norvegicus 81 LOC100909678 ENSRNOG00000049858 ENSRNOT00000075005 2 1 1 82 4 82270517 82271525 CAGTTCAGGACCCGATAGG 59 82270453 82270473 TGAAGTGGAATTCCTTCTCCA 59 NA Rattus norvegicus 81 Rb1 ENSRNOG00000016029 ENSRNOT00000021752 2 1 1 80 15 55083402 55084634 CTGGCAGAAATGACTTCTACTC 59 55083343 55083364 TTCCTCCTTGTTTGAGATTTCC 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083,ENSRNOT00000080338 1 3 4 80 1 189376355 189386386 CCCAAAGTCATTGTAGAGACAC 59 189386426 189386445 AAGAACCATTCGATACACGG 58 NA Rattus norvegicus 81 Zfyve26 ENSRNOG00000059875 ENSRNOT00000079351 1 1 1 80 6 102437322 102439324 ATGGGATCTAAGGTTCTTCTGAC 60 102437264 102437282 CATGAGCAGAGGACTGGAG 60 NA Rattus norvegicus 81 Ptar1 ENSRNOG00000014891 ENSRNOT00000054775 1 1 1 80 1 241522002 241522021 ATCCCAGCAACTATAATGCC 58 241522062 241554813 CAAGAAGGATCTTCAGATCCA 57 NA Rattus norvegicus 81 Nodal ENSRNOG00000000556 ENSRNOT00000000672 2 1 1 81 20 31036143 31036162 GTACATGTTGAGCCTCTACC 58 31036206 31041839 AGTCACATCCACATCTTGC 58 NA Rattus norvegicus 81 Olr40 ENSRNOG00000018541 ENSRNOT00000025003 1 1 1 82 1 167605478 167605496 TCTACCTGTTGCTTCCGTG 60 167605285 167605432 TAACCTTACCAGGTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 3 2 2 80 9 10973767 10974007 GTTGACAACCCAGATGTGAG 59 10973706 10973727 CTGAAGGATCTGAGAGGTTACC 60 NA Rattus norvegicus 81 Pitpnm3 ENSRNOG00000008323 ENSRNOT00000071764 2 1 1 80 10 58638443 58638461 TTCTTCCTCTTCGGCTCAC 59 58636863 58638402 CATCTGGAAACCATCTATCCCA 60 NA Rattus norvegicus 81 Usp20 ENSRNOG00000007710 ENSRNOT00000010786 1 1 1 80 3 9844585 9844603 TACCGCAGTGTCATCTCAG 59 9844647 9844817 GGTAGACACCCGATCACAG 60 NA Rattus norvegicus 81 Zfp213 ENSRNOG00000021872 ENSRNOT00000030704 2 1 1 171 10 12889640 12889658 GGAGCAGATCCTGGAACTG 60 12888684 12889506 CTCTGAGAGCTCATCCTGTG 60 NA Rattus norvegicus 81 LOC100911166 ENSRNOG00000010528 ENSRNOT00000014129 3 1 1 81 3 112521919 112521937 TCATGTTTGCCAAGACAGC 59 112521978 112522862 CATACATATTCCTTCTCCAGCTG 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 3 3 3 95 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558983 254670938 GTGATCCCAAGGTACCTGTC 60 NA Rattus norvegicus 81 Cmbl ENSRNOG00000011260 ENSRNOT00000015448 1 1 1 82 2 84658547 84658565 TATATTTGGCTGGCAGCTG 58 84658610 84661053 AGTCTGGGACAATAGTTGTG 57 NA Rattus norvegicus 81 Gatad2a ENSRNOG00000022173 ENSRNOT00000027943 2 1 1 80 16 21263118 21263793 CTGAAGCAGGTCATAAAGCC 59 21263835 21263854 TAGTACGGACCCGTTATTCC 59 NA Rattus norvegicus 81 Bag1 ENSRNOG00000008277 ENSRNOT00000011455 1 1 1 81 5 57254680 57254986 AGGTTCAGGTGTTCCTAGC 59 57254617 57254635 AAGTTTGTAGACTGCAGCC 58 NA Rattus norvegicus 81 Bag1 ENSRNOG00000008277 ENSRNOT00000011455 3 1 1 83 5 57254680 57254986 AGGTTCAGGTGTTCCTAGC 59 57254615 57254634 CCAAGTTTGTAGACTGCAGC 60 NA Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 3 2 2 80 5 161823512 161827983 AACCTTAAAGCCAATCGCG 59 161823450 161823468 ATCGCAGCTGCTATCTCAG 60 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000012755 1 1 2 202 4 84659269 84659287 AAGCTAAACCCACCTCCAG 59 84670002 84673945 AGTGCCTTTAGAGATAACTGAG 57 NA DesignRelaxed Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792,ENSRNOT00000031331,ENSRNOT00000077458 2 3 3 80 6 108512452 108512471 GGGTCCTTCTTCTGTCTCTG 60 108511948 108512411 TGCACATTCATCAACATCCTG 59 NA Rattus norvegicus 81 Mpnd ENSRNOG00000048282 ENSRNOT00000074075 2 1 1 80 9 11058645 11058931 TTCCTCTTGGACTTCCACTG 59 11058584 11058604 CTGATTATTGATGTCCCAGCG 59 NA Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 1 1 1 65 3 162034162 162034180 GTACAGGGAGGTGATGCTG 60 162033686 162034134 GGTTTGGTTATACTGTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Aco1 ENSRNOG00000005849 ENSRNOT00000008337 1 1 1 80 5 56479277 56480453 GGTTCAGATAAAGCTGGACAC 59 56480494 56480513 TGGAAGTAAGTGAGCTCCAC 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483,ENSRNOT00000041365,ENSRNOT00000077167 1 3 4 80 12 5644412 5645391 ATGCTGTCTTCTTAGGTTTGG 58 5644352 5644370 CGATGAGGAGGTGAAGGAG 59 NA Rattus norvegicus 81 Ass1 ENSRNOG00000008837 ENSRNOT00000012075 2 1 1 81 3 10329062 10329080 CATGAACGTACAGGGTGAC 58 10327706 10329017 ATGGTACTCCTTCAGCCTG 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 1 2 2 80 15 12885956 12885974 ATCAAAGCACAGAAAGGGC 59 12876883 12885913 CATCTATGTCCTGCAAGAGC 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 3 2 2 81 15 12876870 12876890 CATAGATGTTGCAGAGAAGGC 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169,ENSRNOT00000067393 2 2 2 80 14 115423492 115423512 GAGCAAATGTCAATGGATCCC 60 115423554 115424109 TAGCCTCAGCATTTCCCTG 60 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 1 2 2 80 7 27089363 27089384 GCTTCTCAACTAGGGATTTCTG 59 27089424 27091023 GCTGTCCTCAGTATCATCGT 59 NA Rattus norvegicus 81 Oacyl ENSRNOG00000024640 ENSRNOT00000066659 2 1 1 80 18 61377157 61377179 CATGCAAGATACTGATGAGTTCC 60 61377218 61387356 ACCGAGTCGTACATTCTCAG 59 NA Rattus norvegicus 81 Faxdc2 ENSRNOG00000027259 ENSRNOT00000036481 3 1 1 80 10 43505690 43509025 ACAAGAATGAGCCAGTAGAC 57 43505629 43505647 GGAAAGAGATGACGCTCTG 58 NA Rattus norvegicus 81 Thrsp ENSRNOG00000012404 ENSRNOT00000016540 3 1 1 86 1 162385155 162385173 AGAAAGCACAGGAGGTGAC 60 162381996 162385111 GTGTAAAGTGATCTTCCATAGAGTC 59 NA InUTR Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 1 2 2 80 5 173288635 173289542 GTGCTTCTTCAGAGTTCTGC 59 173289680 173289698 AGACTCAGACACCACAGAG 58 NA Rattus norvegicus 81 Lair1 ENSRNOG00000027733 ENSRNOT00000036413 1 1 1 80 1 73867274 73867293 TTTCCTCCTTTGTCTTTCCC 58 73867333 73867448 CTCTTATTGTTTGGAAGTCCCT 58 NA Rattus norvegicus 81 Phldb3 ENSRNOG00000055259 ENSRNOT00000083493 2 1 1 81 1 81482578 81482718 GGCTCTTACTCAGGAAAGGA 59 81482762 81482780 GTCAGGCTCAGAGAAGTCC 60 NA Rattus norvegicus 81 RGD1308878 ENSRNOG00000026782 ENSRNOT00000030001 1 1 1 95 5 162509273 162509291 ATCTTTCATCCCAAGGCAG 58 162509350 162511597 GTGGTAACTGTCCAAGCTG 59 NA Rattus norvegicus 81 Olr259 ENSRNOG00000009791 ENSRNOT00000012974 1 1 1 60 1 172567733 172567753 ATCATCCTGTGCATTTACCTG 59 172567693 172567714 TGATGAGAAGGATTGTACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ocm2 ENSRNOG00000001031 ENSRNOT00000043439 1 1 1 80 12 12630604 12630622 TGAGTCAGAGACCAAGTCC 58 12630665 12634204 ATTTCCTGGAATTCATCCGC 59 NA Rattus norvegicus 81 Ocm2 ENSRNOG00000001031 ENSRNOT00000043439 3 1 1 80 12 12630047 12630067 GCCAAGTGAAGGATATCTTCC 59 12630104 12630572 GTAGGAAATACTTGAGCTCATCTC 59 NA Rattus norvegicus 81 LOC687119 ENSRNOG00000049778 ENSRNOT00000073565 1 1 1 60 1 173047746 173047764 CCTCTTTGTGGTGTTCCTG 58 173047788 173047806 GATCATGCCAAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1c13 ENSRNOG00000050040 ENSRNOT00000029049 2 1 1 80 17 69641012 69641522 GACACATGGGAGATGTTGG 58 69641565 69641584 CTGCTTGTGGTTAAAGTTGG 58 NA Rattus norvegicus 81 Naa11 ENSRNOG00000002031 ENSRNOT00000002776 2 1 1 82 14 13828451 13835276 CATTGCCTGAGCATCTCTG 59 13835322 13835340 AGGATACTGCAGAGCACAG 59 NA InUTR Rattus norvegicus 81 Olr189 ENSRNOG00000049717 ENSRNOT00000040861 2 1 1 60 1 169952752 169952770 GTATGTGGTCGTTCCTCCT 59 169952791 169952812 TATCTGTTTAGTCCTGACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha4 ENSRNOG00000013213 ENSRNOT00000041689 1 1 1 80 9 83124614 83124633 CTACGGAATCGTTATGTGGG 58 83121399 83124574 GCTTTGATCACATCTTGATTGG 58 NA Rattus norvegicus 81 Olr85 ENSRNOG00000015785 ENSRNOT00000021131 3 1 1 60 1 168349158 168349176 CCAGAATCAAGTCCCTCAG 57 168349199 168349218 GTGTAGAAGGCAAGGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dars2 ENSRNOG00000002813 ENSRNOT00000003828 3 1 1 80 13 78858055 78859799 TGCCTTAGGGTTAGACAGAC 59 78857994 78858016 TAGGATTTAGGGAAGGCTATGAC 59 NA Rattus norvegicus 81 Ush1c ENSRNOG00000021149 ENSRNOT00000067392 3 1 1 80 1 102237902 102238030 CCATCAAAGTGAGACACATCG 59 102237674 102237693 ACTGATCCACATACTGCCAC 60 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253,ENSRNOT00000017252 1 2 3 80 2 243732450 243732468 CTTAGGACATGAAGGCGCT 60 243732512 243733164 GGGATGACGGTATCACCTG 60 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 2 2 2 80 7 27233712 27233899 TGGAGTAGCAAGACTGAGAC 59 27233651 27233671 ATCATCAGCTTCCTCCTTCTC 59 NA Rattus norvegicus 81 Epb42 ENSRNOG00000011649 ENSRNOT00000015556 2 1 1 80 3 112972481 112972500 CAATGGAGTCCTTGCTACTG 58 112969908 112972438 GTGGAGAGTCTCAGAACCT 58 NA Rattus norvegicus 81 Pls3 ENSRNOG00000027520 ENSRNOT00000060168 2 1 1 80 X 119119916 119119937 CTGCATTAACTATGACCTTGTG 58 119119978 119123038 ATCGACACTGCATACTTGG 58 NA Rattus norvegicus 81 Tekt2 ENSRNOG00000011033 ENSRNOT00000014721 1 1 1 80 5 144342452 144342472 CTCATTGATGAAGTCCACCAG 59 144342241 144342410 ATCCAGAGCATCCTGTGTC 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000076345 2 1 3 90 13 76649778 76658801 CATCATTGCAGCTACTTCCC 59 76649707 76649725 GATTAGGATGGACTGGCCA 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000076345 3 1 3 90 13 76649779 76658802 CCATCATTGCAGCTACTTCC 59 76649708 76649726 ATTAGGATGGACTGGCCAG 59 NA Rattus norvegicus 81 Nucb2 ENSRNOG00000020456 ENSRNOT00000027752 2 1 1 80 1 185120766 185122213 ATAGAGGAGATAAGGAGCGG 58 185120705 185120723 CAGTTCATCCAGTCTCGTC 58 NA Rattus norvegicus 81 Rn60_X_0725.2 ENSRNOG00000051067 ENSRNOT00000076314 3 1 1 60 X 71648328 71648348 GAGAACTGGTTCTACACAGGA 59 71648370 71648388 CACCACCATGGAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551702 ENSRNOG00000032548 ENSRNOT00000042191 1 1 1 80 20 43593211 43593229 CTTGCCCTCTCACTCTGTC 60 43593272 43607750 CTTTCTCCCAGTGGGATCTC 60 NA Rattus norvegicus 81 Klhl13 ENSRNOG00000014029 ENSRNOT00000018788 3 1 1 80 X 121625096 121625114 CATTTGCAGTCTTGCAAGG 58 121608488 121625053 GTCAAATCCCTGTAACACCA 58 NA Rattus norvegicus 81 Slc39a10 ENSRNOG00000011677 ENSRNOT00000016262 3 1 1 80 9 60040309 60042381 GCCAACATGAATGTTTGAACG 59 60042423 60042441 ATAGATCAGGCGAGATGGG 58 NA Rattus norvegicus 81 Rn60_13_0839.1 ENSRNOG00000051042 ENSRNOT00000075889 1 1 1 60 13 78907918 78907938 ATGAGTGCATCCAATATCTCC 58 78907878 78907896 ATTGCAGCATGATCTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epsti1 ENSRNOG00000009471 ENSRNOT00000012632 2 1 1 80 15 60121722 60121743 CTATTCGAATCAGGAAGGATGC 59 60121778 60129916 CTAGTTTATTACTCTTCTCCCTCTG 58 NA Rattus norvegicus 81 Mief2 ENSRNOG00000028208 ENSRNOT00000023838 1 1 1 61 10 46972310 46972328 TTTCCAAGGCTTGGAAGCT 60 46972480 46972498 TGAGAACTCTGCCATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484,ENSRNOT00000089294 2 2 2 80 11 81377127 81377145 TTGAGCCGAGGGTTTAAGG 60 81376835 81377085 GGCAGAAAGTAACACAACCTG 60 NA Rattus norvegicus 81 LOC100362814 ENSRNOG00000011132 ENSRNOT00000015073 1 1 1 80 3 94163715 94163733 CTCCTTAGCCAGCTCTCAG 59 94161603 94163672 ATATTCCAGTGGTTCAGCGA 59 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000010171 2 1 2 80 7 142918574 142919384 GGTCCTCATCACTGATCGA 59 142919428 142919446 TTCAGACAGCTAGCAATGC 58 NA Rattus norvegicus 81 LOC100360750 ENSRNOG00000030374 ENSRNOT00000050289 2 1 1 89 13 47380683 47380703 TAGCATTGGAACAGACAGAGG 60 47380753 47382670 TGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 Fam96a ENSRNOG00000017119 ENSRNOT00000022999 3 1 1 88 8 71792268 71795002 CCATTCAAACACAAGCTGG 58 71797642 71797662 CGCTCTTTGTCATTTATCTGC 58 NA Rattus norvegicus 81 Trim44 ENSRNOG00000005191 ENSRNOT00000007018 2 1 1 81 3 92225481 92225499 GATTCTGGTGGACTGAAGG 58 92186959 92225440 CTCGAGTTACTTTAGGATCTGAG 58 NA Rattus norvegicus 81 AABR07002473.1 ENSRNOG00000046339 ENSRNOT00000012225 3 1 1 83 1 74775018 74777263 GTTCAACTGGAGAACTTCTGTC 59 74778240 74778261 GGTCCATAGGAAATCTGAAGGA 59 NA Rattus norvegicus 81 Npc2 ENSRNOG00000012062 ENSRNOT00000016076 2 1 1 80 6 108472023 108479445 TTACTAGCGGCACTCAGTC 59 108471961 108471982 GAATAGGGAAGTAGACTGGGAC 60 NA Rattus norvegicus 81 Rps2-ps2 ENSRNOG00000060523 ENSRNOT00000084691 3 1 1 60 20 3134744 3134764 TTTGATGCCATCTTCAAGACC 59 3134704 3134723 ATCAATGTTCCAGAGGTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561034 ENSRNOG00000030818 ENSRNOT00000040672 3 1 1 80 1 170213071 170214997 CAAGGATAAGGTCATCGAGG 58 170215040 170215058 AGATCATAGTAGGCTGCGT 58 NA Rattus norvegicus 81 Hcfc2 ENSRNOG00000053510 ENSRNOT00000086905 1 1 1 80 7 27133391 27134708 TTGTATGAGTTACAAGCAAGCC 59 27133332 27133350 AGGACAAGGAGGTAAACCG 59 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 1 2 2 80 11 72164733 72167898 AGCATTTCACAGCTATTGTCC 59 72164673 72164694 CAGACTGCTCTTCTATGATCTG 58 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 3 2 2 80 11 72164734 72167900 TGAGCATTTCACAGCTATTGTC 59 72164675 72164696 GACTGCTCTTCTATGATCTGCT 60 NA Rattus norvegicus 81 Nkx1-2 ENSRNOG00000017006 ENSRNOT00000022904 1 1 1 96 1 204605348 204605366 AATCCAATCGGGTCACAGG 60 204603751 204603769 CTTCTTCCTCCTCTTCCGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07015066.1 ENSRNOG00000046600 ENSRNOT00000072398 2 1 1 61 14 46588729 46588747 GAGAGGGTGTAAATCTCGC 58 46588772 46588790 TGTTCACCTTGGAGACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 1 3 3 97 12 17743326 17745693 GAAGTATTGAGGAAGCCATTCC 59 17745751 17745769 CAAGAAGTTGGCCGATGTG 60 NA Rattus norvegicus 81 Btnl5 ENSRNOG00000047304 ENSRNOT00000060394 3 1 1 80 20 2729470 2729491 TTGAGAAGGATGAGTTACAGAC 58 2729123 2729223 TCCTCCTATCAAGTTCCTCC 58 NA Rattus norvegicus 81 Akr1c1 ENSRNOG00000038331 ENSRNOT00000058367 3 1 1 80 17 69460239 69460258 AGTGCGACTAAGTGATGGTC 60 69457693 69460199 GCCTTACTCTTAGGTACCTCTC 59 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481,ENSRNOT00000013353 2 2 2 80 7 117131211 117131312 ATGAAGCATAAGGGCTTTGC 59 117131150 117131169 CACAGAGTTCATCTGCTCCA 60 NA Rattus norvegicus 81 Kbtbd6 ENSRNOG00000047604 ENSRNOT00000071455 1 1 1 60 15 61731894 61731912 AGGATTTCCAAGCCCTCTG 59 61731934 61731954 CCGTGTCCTTTAATTCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr271 ENSRNOG00000055938 ENSRNOT00000088537 3 1 1 60 1 172807571 172807591 CATGTACTTCTTTCTCAGCCA 58 172807611 172807631 TGTGACAGAAGATGAGTAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008,ENSRNOT00000089433 3 3 3 80 3 113418583 113418783 CCAACTGGTTCAGCTATGAG 58 113418522 113418540 CAACTTTGACCCAGAAGGT 58 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 3 3 3 80 3 2515012 2519288 GACTAAAGATAGTGACAATCCACC 59 2514955 2514973 ACTCCTCTTTGCATGTCCC 60 NA Rattus norvegicus 81 Sugp2 ENSRNOG00000020269 ENSRNOT00000027457 1 1 1 80 16 20937216 20937237 AGGATAAATCTAAACGGTACGG 58 20930027 20937177 CTGTCCGTAAGAGATCTTGAG 58 NA Rattus norvegicus 81 Olr772 ENSRNOG00000048092 ENSRNOT00000040364 2 1 1 60 3 102926267 102926286 GGTTCGACAAATTTCTTGCT 57 102926308 102926327 ATGGCTGGATTTAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909722 ENSRNOG00000050844 ENSRNOT00000073999 3 1 1 61 3 9373345 9377046 TCGCCTCATTCAGCTTCTC 60 9377069 9377089 TGACTGAGTTCACCAGATGAG 60 NA DesignRelaxed Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 2 2 2 80 1 31979804 31980075 TTGTTCTGATTGATGAGGTGG 58 31980117 31980135 GGATAGCATCTGATGGCTC 58 NA Rattus norvegicus 81 Btnl7 ENSRNOG00000050170 ENSRNOT00000073990 3 1 1 80 20 2757795 2758157 TCCAGACCTGGACTTTCAC 59 2757733 2757752 GGGTCACTCTCATCCTATCC 59 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486,ENSRNOT00000090739 3 2 2 90 5 107747690 107747708 ATGGAAGTCATTGCAGTGC 59 107747761 107748548 GCCATTTCTATGAGGACCTC 58 NA Rattus norvegicus 81 Pdpk1 ENSRNOG00000006136 ENSRNOT00000067660 1 1 1 80 10 13472742 13472761 AAACGAAGACATGCACATCC 59 13470380 13472699 TTGGCTCTAGCTTGTTTGC 59 NA Rattus norvegicus 81 Mlycd ENSRNOG00000014522 ENSRNOT00000019923 1 1 1 82 19 52041284 52045426 ACAACATCCAGAGCATTGTG 59 52045471 52045489 GGAGTAGAAGACAGCAGCA 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 1 2 2 80 12 12880201 12880220 GGGAACCATGTTGTATACCG 59 12879930 12880158 GATGCTCGCTTTGATGGAC 59 NA Rattus norvegicus 81 Pcyox1l ENSRNOG00000019643 ENSRNOT00000026583 2 1 1 82 18 57022574 57022592 TTCTGGTTTGCTGAAGCTC 58 57022145 57022528 CTTTCCCTTCTGTGCTGTG 59 NA Rattus norvegicus 81 LOC685793 ENSRNOG00000030145 ENSRNOT00000041610 3 1 1 60 1 55220616 55220636 TGTATGGTAGTGGGAAAGCTC 60 55220657 55220676 CTTGTCTTTGCAGTTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acadl ENSRNOG00000012966 ENSRNOT00000017686 3 1 1 80 9 73863993 73864011 ATTGCAGAGAAACATGGCG 59 73862471 73863951 GCAATTTGAGTATGCTTGCTC 59 NA Rattus norvegicus 81 Ccdc127 ENSRNOG00000012775 ENSRNOT00000017779 2 1 1 96 1 31540241 31543447 AGCGTTTCGTTGGATTTGG 60 31540163 31540181 AAGATCCTGCTGGAAAGCA 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 1 2 2 80 2 232155839 232155861 GAGGCATTATGACTCTATTGCTG 60 232154421 232155803 TTCTCCTCTTGTAAGGCTAACTC 60 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 2 2 2 80 6 76069286 76069307 GGCTACATCAGACAAGAATAGG 59 76065978 76069247 AGTTCTCTAAGTCCGATTCCC 59 NA Rattus norvegicus 81 Tert ENSRNOG00000025327 ENSRNOT00000022683 3 1 1 80 1 32261077 32261095 CCAGTTCACCAAGCATCTG 59 32260289 32261033 TTCATGGAGATGCTCTGCT 59 NA Rattus norvegicus 81 Plxnc1 ENSRNOG00000007970 ENSRNOT00000011178 1 1 1 80 7 35967451 35967469 GTTCTACAAGCTCGTTCCT 57 35963455 35967409 ACTTGAATTCTTCTCACCTCC 58 NA Rattus norvegicus 81 Tgm6 ENSRNOG00000006830 ENSRNOT00000009097 3 1 1 80 3 122671647 122677284 GGGCCACTAGAAGAGAAGAG 59 122677324 122677345 GATCTTCTTGTCTTCTGTCAGG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 3 2 2 75 12 2581134 2581152 AAGGAACCTGTGGTCAGAG 59 2581190 2581293 AAACTCTTCGTGTTCCAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Prnd ENSRNOG00000021260 ENSRNOT00000050900 1 1 1 60 3 124545583 124545601 GGCAACAAGTACTATGCGG 59 124545625 124545643 AGCCTTCGTAGTAGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syvn1 ENSRNOG00000020950 ENSRNOT00000028462 2 1 1 80 1 221411209 221411227 TGTGGCACTCTTTACACTC 57 221411271 221411381 CTGCGTTCCATAAAGTCCA 58 NA Rattus norvegicus 81 Pcsk1 ENSRNOG00000011107 ENSRNOT00000015185 1 1 1 80 2 91481435 91482624 TATGCCAATTATGACCCAGAG 58 91481375 91481394 ATTTGTGGGATCATATCGGG 58 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 2 2 2 80 7 143163543 143163562 TCAAGGCTCAGTATGATGAC 57 143163284 143163500 TCATCTCCTCACACTTGGT 58 NA Rattus norvegicus 81 Adra1b ENSRNOG00000060087 ENSRNOT00000087937 2 1 1 114 10 29449475 29449496 TTCCAACTCCAAGGAGCTG 60 29449373 29449392 AAGTTTGACAGCTATGGCAC 59 NA Rattus norvegicus 81 Snx1 ENSRNOG00000017029 ENSRNOT00000022960 3 1 1 80 8 71762038 71762539 CAAGCTATGAAGAGCTGGAG 58 71761977 71761996 CGATCTTCTCAGGATCAGTG 58 NA Rattus norvegicus 81 Ggact ENSRNOG00000027040 ENSRNOT00000019158 1 1 1 80 15 109316924 109316943 CTTCCTGAAGGATCCATGTG 58 109308823 109308841 ATACACGAAGATGTGGGCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ftsj2 ENSRNOG00000043267 ENSRNOT00000042366 2 1 1 120 12 16399439 16399458 AGAAGCATCACATCCTGAGG 60 16399541 16402477 ATGGGAGAGCTGGAATCTG 59 NA Rattus norvegicus 81 Mtbp ENSRNOG00000004412 ENSRNOT00000005887 1 1 1 80 7 95377624 95377858 CATACACGGATGCTGAAGG 58 95377902 95377920 GGCATCAAAGCTCTCATGG 59 NA Rattus norvegicus 81 LOC100361879 ENSRNOG00000045749 ENSRNOT00000071297 1 1 1 60 14 83220306 83220324 GTTCTCCCAGATCTGTGCA 59 83220348 83220366 GTTCGCTTTGAACTCGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdia3 ENSRNOG00000015018 ENSRNOT00000020478 2 1 1 80 3 113395311 113396493 AACTACTGGAGAAACAGGGTC 60 113396533 113396553 GCTAGCTACAGCAAAGTTGAG 59 NA Rattus norvegicus 81 Ech1 ENSRNOG00000020308 ENSRNOT00000027537 1 1 1 80 1 87010714 87010735 ATATCTAAAGACTCCGACTGTC 57 87010775 87013581 GTCCATGAGGTCAATACCTG 58 NA Rattus norvegicus 81 Cep126 ENSRNOG00000021839 ENSRNOT00000029887 2 1 1 84 8 6261512 6261530 ACTATCTGTGCCCTCTCAG 58 6258711 6261467 CTTCTTGTACATAGTACAGCCT 57 NA Rattus norvegicus 81 Ercc6l ENSRNOG00000003208 ENSRNOT00000004310 2 1 1 116 X 72022228 72034017 GAGAGTTACCTGAGATATTCGC 58 72022133 72022151 GATCACCTTCTTGGTGGGA 59 NA Rattus norvegicus 81 Dis3l ENSRNOG00000010537 ENSRNOT00000014071 1 1 1 80 8 69771679 69771699 CAAGATCATCTCTACCACAGC 58 69771537 69771638 TGGACAGAAATCCTTACCGT 59 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000053884 ENSRNOT00000071568 2 1 1 183 4 82299917 82299935 CAACTTCAAGTTCGGACGG 59 82298342 82298361 TATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Pbx4 ENSRNOG00000010736 ENSRNOT00000014265 2 1 1 84 16 21308880 21308898 CATCTGAGCAACCCTTACC 58 21306160 21308832 AGTTAGAGACCTGGGACAC 58 NA Rattus norvegicus 81 Lamtor4 ENSRNOG00000027028 ENSRNOT00000029279 3 1 1 86 12 19576924 19576943 ATCTCAGAACTGGTCAGCAC 60 19576992 19577301 ACCAAAGACCACAGACAGG 60 NA Rattus norvegicus 81 Vom1r20 ENSRNOG00000028807 ENSRNOT00000041434 3 1 1 60 1 61133418 61133438 TCTACTGTTCTCATCTTGCAC 58 61133458 61133478 GTTTGTTTCTGGGAATGTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911225 ENSRNOG00000047000 ENSRNOT00000073302 2 1 1 87 1 141834378 141834396 CCCAGTGACAAGGAGAAGG 60 141834445 141835627 TCAGGGCTTTCTTACAGTCAG 60 NA Rattus norvegicus 81 Pomt2 ENSRNOG00000012146 ENSRNOT00000016242 2 1 1 80 6 111150650 111152585 TACAATACCAACACAGATCCTC 58 111150591 111150612 GTGTTCTAGTCGTATGATGTCC 59 NA Rattus norvegicus 81 Pomt2 ENSRNOG00000012146 ENSRNOT00000016242 3 1 1 80 6 111152613 111152633 ACCACCTATTTGCATAAGGAC 58 111150639 111152572 GGAAGGGTCTAGAGGATCTG 58 NA Rattus norvegicus 81 LOC100912491 ENSRNOG00000050162 ENSRNOT00000074431 3 1 1 60 5 137547205 137547224 GCCATCATGTCCATAGACAG 58 137547245 137547265 TGATGACCTTGTACCTGAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr630 ENSRNOG00000006024 ENSRNOT00000007890 1 1 1 60 3 76708219 76708239 TGACCTTTGTTACACATCCAC 59 76708179 76708200 CCTTTCTGCCAGTAAATCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr630 ENSRNOG00000006024 ENSRNOT00000007890 3 1 1 60 3 76707945 76707964 TTCTCATTGCCTTTGTGTCC 59 76707904 76707923 ACATCACAGAAGTAGTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r2 ENSRNOG00000034119 ENSRNOT00000052300 1 1 1 60 1 86362706 86362726 GAAACGTGTCCATTAGTACCA 58 86362748 86362766 GGACTGATGGTGATTGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsbp1 ENSRNOG00000014415 ENSRNOT00000019443 3 1 1 89 19 51985683 51986387 CATCGGAAGGATCGATGAC 58 51986440 51986458 AGTTCTTCTACTCCAGCCT 57 NA Rattus norvegicus 81 Wdpcp ENSRNOG00000054331 ENSRNOT00000092168 3 1 1 80 14 106749838 106751075 GATGCAGAAGGAGAACTGAG 58 106759325 106759345 ACCAAAGTGAACCATTCTGAG 59 NA Rattus norvegicus 81 LOC100362149 ENSRNOG00000029627 ENSRNOT00000041813 3 1 1 60 3 22964576 22964595 TCGTTTCCAGATGAGAATCC 57 22964616 22964636 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC239701.1 ENSRNOG00000060437 ENSRNOT00000088616 1 1 1 60 Y 67341 67359 AACAGCCATTTCCAAAGCA 59 67299 67320 GTAGGAGATGAAGTAAGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb17 ENSRNOG00000010436 ENSRNOT00000088644 2 1 1 80 5 160014214 160014344 CTCAGCTCACAGTGGTACC 60 160014388 160014406 CAGCTTTGCTGATCTCAGC 59 NA Rattus norvegicus 81 Ptger2 ENSRNOG00000050968 ENSRNOT00000075209 3 1 1 93 15 19339130 19339148 GACTTCTATGGCGGAGGAG 59 19339204 19349300 AGCAAAGATTGTGAAAGGCA 59 NA Rattus norvegicus 81 Mdga2 ENSRNOG00000000618 ENSRNOT00000000767 2 1 1 80 6 88916977 88916996 CTATACCATCCGGGAAGGAG 59 88834824 88916934 TTGGTCCACCTGATCTGTG 59 NA Rattus norvegicus 81 Sephs1 ENSRNOG00000018125 ENSRNOT00000024697 3 1 1 80 17 77331168 77331187 GATGGGTGTCACAGAATGTG 59 77330076 77331125 ACTTTATCCCTTTCCCGGT 58 NA Rattus norvegicus 81 LOC100363268 ENSRNOG00000029339 ENSRNOT00000042985 2 1 1 60 2 195940743 195940761 TGGGCATTAGCCTAGATCG 59 195940784 195940803 GCATTCTTGTAAGGCTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 3 3 4 82 18 6777414 6777432 ACTGATGTTACTGGTTCCG 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 Vom1r3 ENSRNOG00000048251 ENSRNOT00000045789 2 1 1 60 1 86429925 86429943 GTTTCCTCCAGAACATCCC 58 86429965 86429985 TGAACATGAGAGCCAGTATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifne ENSRNOG00000024204 ENSRNOT00000029976 1 1 1 60 5 107233497 107233517 TTCCAGACACATAGTTCTCGG 60 107233535 107233557 CAGCTAGGACTTCTTCTATATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC131537.1 ENSRNOG00000045985 ENSRNOT00000071823 2 1 1 136 10 109774005 109774381 GAAGTTGTTTCGGTCTGCT 58 109774559 109774577 CATTAAGCTGAACCGGAGC 59 NA Rattus norvegicus 81 Psmc6 ENSRNOG00000007203 ENSRNOT00000009649 2 1 1 80 15 19685705 19685726 CCATTGTAAAGCTTTCAGATGG 58 19685765 19687659 CACGAATTGCAAACATACCTG 59 NA Rattus norvegicus 81 Taar7g ENSRNOG00000048265 ENSRNOT00000044271 2 1 1 60 1 22465274 22465295 GATTCCATCATTGATGCCTTCC 60 22465235 22465258 CTAGGATTTCATACACATACGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar7g ENSRNOG00000048265 ENSRNOT00000044271 3 1 1 60 1 22465675 22465693 TCACTGCATCTGTTTCTGG 58 22465633 22465652 CCATAGATGATGGACAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx10 ENSRNOG00000011944 ENSRNOT00000016265 3 1 1 81 4 81347767 81358428 CAGAAAGAGGAGTTCGTGAG 58 81358469 81358490 CATAGTCGATGTAAGAATGCCA 59 NA Rattus norvegicus 81 Haus5 ENSRNOG00000024266 ENSRNOT00000031044 2 1 1 80 1 89113559 89113577 GAAGCTGTTGAACCTGCTG 60 89112863 89113516 CCATTTGATCTGCAGTCCTC 59 NA Rattus norvegicus 81 Scnm1 ENSRNOG00000021092 ENSRNOT00000028639 1 1 1 81 2 196300571 196300864 CTTACCCTCCGAAGCTCTG 60 196300508 196300528 CATCAGAGTCAAACTCAACGT 59 NA Rattus norvegicus 81 AABR07032255.2 ENSRNOG00000031591 ENSRNOT00000042496 2 1 1 81 18 56965599 56965618 GGGTGATATTCCTGGAGTCC 59 56965660 56965681 TTTCCTTCTGCCTTTGTACAG 59 NA Rattus norvegicus 81 LOC499219 ENSRNOG00000024789 ENSRNOT00000034019 3 1 1 85 1 169145696 169145714 ATGTAGCAGAGAAGAGCCT 58 169151922 169151940 CTTCACCTTCATGCTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Rab18 ENSRNOG00000018972 ENSRNOT00000025828 2 1 1 80 17 59861222 59869921 ACTTGCAATATGGGATACAGC 59 59869963 59869981 ATAACTCCCTGTGCACCTC 59 NA Rattus norvegicus 81 Actr1b ENSRNOG00000016789 ENSRNOT00000076692 1 1 1 82 9 43269281 43269462 AAATCAAGATCTCTGCTCCTC 58 43269062 43269080 CTTGAAGGTGTCCAGTGAG 58 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 2 2 2 80 8 115570264 115570283 TTGGAACAAGTCAAGCAGTC 59 115570326 115573291 TGAGCATGCCTTGTATGGA 59 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 3 2 2 80 8 115570266 115570285 GGAACAAGTCAAGCAGTCAC 60 115570326 115573293 TATGAGCATGCCTTGTATGGA 59 NA Rattus norvegicus 81 Rps16 ENSRNOG00000019578 ENSRNOT00000026576 2 1 1 80 1 85406079 85406189 AAATTTATGCTATCCGGCAGTC 59 85405927 85405947 CCTTCTTAGAGGCTTCATCCA 59 NA Rattus norvegicus 81 Cxcl10 ENSRNOG00000022256 ENSRNOT00000003075 1 1 1 80 14 17211492 17211705 GCATGTTGAGATCATTGCCA 59 17211748 17211766 AAGCTCTTGATGGCCTCAG 60 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572,ENSRNOT00000085310,ENSRNOT00000085479 1 3 3 80 10 5223408 5226998 AAGCTAGAGTTTGCATTGGG 59 5223347 5223366 GGAAGAGAATGCTGGAAGGA 60 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203,ENSRNOT00000058422 2 2 2 80 11 81714672 81715000 TCATTCCACACCAGACTCTG 60 81714611 81714629 TTGGTGTCATTGAACCGGA 60 NA Rattus norvegicus 81 Xrcc1 ENSRNOG00000019915 ENSRNOT00000027057 1 1 1 80 1 81413931 81413949 CTCAAGGCTGACACTTACC 58 81413992 81426134 CTTCTCCAACTGTAGGACCA 59 NA Rattus norvegicus 81 Nip7 ENSRNOG00000020391 ENSRNOT00000027653 1 1 1 80 19 39258087 39258107 GGAAAGTTTACCAAGACCCAC 59 39258147 39258754 CACTTTATACTTGGCGTAGGG 59 NA Rattus norvegicus 81 Rpl28 ENSRNOG00000017127 ENSRNOT00000058943 3 1 1 87 1 72621483 72621501 GCATCTGCAATGGATGGTC 59 72621332 72621432 CAGATTATTGGGCTCCGTG 58 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 3 2 2 80 3 173821100 173821118 GAGCTCAAGGATGACTTGC 59 173821161 173841825 CTTCCTTGGCAATGTTCCAG 60 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 3 2 2 82 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151311 104151331 GATTCTCCAAACTTCGCAGAG 59 NA Rattus norvegicus 81 AABR07070892.1 ENSRNOG00000000896 ENSRNOT00000001195 2 1 1 92 8 90304377 90304398 ACTTACAAGAAACCAGCTTCAC 59 90304487 90304505 TAATTTGCTCTGCAGCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000035821,ENSRNOT00000085599,ENSRNOT00000077790 3 4 4 86 2 57867921 57868470 GGGACCTCCTCAAGTTCTG 59 57867853 57867873 AAATCTGGTGATGCGTTTGTC 60 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725,ENSRNOT00000031946,ENSRNOT00000059545 2 3 3 85 7 27262946 27267176 CCATTCTCAGAATCAATTCCCT 58 27267222 27267240 GATCAGAGTGGACTTTCCG 58 NA Rattus norvegicus 81 LOC100912365 ENSRNOG00000004066 ENSRNOT00000005407 3 1 1 61 13 104283498 104283518 GAACTTTGTCCATCAGAGGAG 59 104283457 104283475 CTTCCCACTTCTCTTCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcng1 ENSRNOG00000054314 ENSRNOT00000081648 1 1 1 72 3 165026960 165026978 CTGTCAACCTGTCTGTCAG 58 165021762 165021780 CACATTTGGGAACACTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Uso1 ENSRNOG00000002301 ENSRNOT00000003277 1 1 1 80 14 17424150 17424173 GTAGCTTCATCTACTTTACTGGAC 59 17423784 17424114 TTCCAAGCGGTATTTCTTAGAC 59 NA Rattus norvegicus 81 Il22ra2 ENSRNOG00000012259 ENSRNOT00000016354 3 1 1 88 1 15096056 15098454 TACAAGACGTATGGACAGGG 59 15098504 15098523 AAGGTTTCTTTGGTCAGGTC 58 NA Rattus norvegicus 81 Vldlr ENSRNOG00000027491 ENSRNOT00000035814 1 1 1 80 1 245265132 245266040 GAGTGTCAAAGTACTTCAACTCC 59 245266078 245266098 TCCACTAGTTCGTAGGATGTC 59 NA Rattus norvegicus 81 Rn60_12_0168.1 ENSRNOG00000024366 ENSRNOT00000031085 1 1 1 60 12 14736705 14736723 TCAGGACCATCTTGCTCTC 59 14736747 14736765 CAAAGGCTCTCGATGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fzr1 ENSRNOG00000004169 ENSRNOT00000005624 3 1 1 102 7 11209050 11209070 GGAGCGTAAACTTCCATAGGA 60 11209209 11209355 TAAGCAAGGCCATCTTTGC 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 1 4 8 86 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217603 8223846 TTATCCAAACTCCTGGGCT 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671,ENSRNOT00000065542,ENSRNOT00000066928,ENSRNOT00000091318 1 4 4 80 15 973870 977403 ATCCATATTGCCTGGTACG 57 977447 977465 AGGATAACGCACATGTCAC 58 NA Rattus norvegicus 81 Prr20e ENSRNOG00000026675 ENSRNOT00000039058 3 1 1 84 4 121046315 121052108 GACGTCCCATCAAGACTCC 60 121052154 121052174 CTCATCTACTTCCACTGGGTC 60 NA Rattus norvegicus 81 Vil1 ENSRNOG00000015408 ENSRNOT00000021432 2 1 1 80 9 81710334 81710355 CACCAAATCTTATGATGACCTC 57 81710396 81712086 GGGCTCATAACCTCATCAG 57 NA Rattus norvegicus 81 Aplp1 ENSRNOG00000020851 ENSRNOT00000028297 1 1 1 81 1 88900778 88900797 AACGAATGAATCAGAGCCTG 58 88899437 88900734 AGAAGCTCCTGGATCTGTG 59 NA Rattus norvegicus 81 Aplp1 ENSRNOG00000020851 ENSRNOT00000028297 2 1 1 81 1 88900778 88900798 GAACGAATGAATCAGAGCCTG 60 88899438 88900735 GAAGCTCCTGGATCTGTGG 60 NA Rattus norvegicus 81 Wap ENSRNOG00000055684 ENSRNOT00000091193 1 1 1 80 14 86898691 86898709 CTGGCACCATGAAATGCTG 60 86898085 86898652 AGGATATCACTGTAGGAGATTCTG 59 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 2 2 2 81 10 85992283 85992301 AATGTTTGGCGATGCTGTC 60 85989823 85992239 CCACGCAAATCTGATTCTCC 59 NA Rattus norvegicus 81 Zfp143 ENSRNOG00000010087 ENSRNOT00000013733 3 1 1 80 1 174731249 174731267 AAGTAGCCACAGTAACCCA 58 174731309 174734079 ATATGTTGACGTGTTGAGTCC 59 NA Rattus norvegicus 81 LOC360919 ENSRNOG00000039504 ENSRNOT00000060548 1 1 1 80 14 19057343 19057362 GAATATCTGCAAGGCATCGT 59 19054972 19057300 GAATCAATTCTACCGCGCT 58 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 2 2 2 92 15 20777230 20778252 CATCACGAAGAACATCTGGA 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 AABR07061336.1 ENSRNOG00000028235 ENSRNOT00000031768 3 1 1 99 4 116933639 116933657 TTGAGGAACCCAGTGTGAG 59 116935918 116935936 CTCAACTCTGGGTCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Tfap2c ENSRNOG00000005246 ENSRNOT00000006991 2 1 1 89 3 170550563 170552114 AAGAGGATTGCGAGGATCG 60 170552166 170552185 GACTGTAGAGATGCTGTCCC 60 NA Rattus norvegicus 81 Rbp4 ENSRNOG00000015518 ENSRNOT00000021055 2 1 1 80 1 256812972 256812990 GACACAGAAGATCCTGCCA 59 256808307 256812928 CCAGTGGTCATCGTTTCCT 60 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 3 2 2 83 1 87167611 87167852 GCTTGTCACAGCATACCTC 59 87167546 87167564 CCATGGAGGTCAGAAACAC 58 NA Rattus norvegicus 81 AABR07066677.1 ENSRNOG00000049939 ENSRNOT00000074599 3 1 1 141 9 12346196 12346882 ACAGTTCCTACCGCATCAG 60 12346986 12347005 CTCTTTGTCTCCACAGAGGA 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282,ENSRNOT00000051342 2 2 2 80 17 69391718 69391740 GAGTCCAGAAGATATGAAAGTCC 59 69388578 69391679 GGGTGGCCTTCAAATATTCC 59 NA Rattus norvegicus 81 Tas2r126 ENSRNOG00000017881 ENSRNOT00000024048 1 1 1 60 4 71837184 71837204 TTTAAGGAGTGGAACAGAAGG 58 71837226 71837244 TGGTGACAAGTTTCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r126 ENSRNOG00000017881 ENSRNOT00000024048 3 1 1 60 4 71837039 71837058 GTTGAAGTGGAGATTCCCAG 58 71837081 71837099 GGACACCAAGATAGAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365556 ENSRNOG00000016910 ENSRNOT00000022755 1 1 1 80 3 12217614 12217633 ACGAACAAAGATCCAACCAG 59 12215710 12217571 TGAGGTGATCATAGCTGCA 59 NA Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 1 2 2 80 20 29045759 29045777 GCTTAATAAGGAGCGGGAG 58 29044038 29045715 TCAATCCGTACCTTCTCCA 58 NA Rattus norvegicus 81 Olr809 ENSRNOG00000026333 ENSRNOT00000038359 2 1 1 60 4 72389326 72389347 AGCCATCTTTACATACATGAGG 58 72389367 72389386 AACCATCTTCTCTTGTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir101b ENSRNOG00000035532 ENSRNOT00000053655 3 1 1 60 1 247263746 247263764 TCGGTTATCATGGTACCGA 58 247263785 247263806 TTCTTCAGCTATCACAGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asic2 ENSRNOG00000058308 ENSRNOT00000086961 3 1 1 80 10 68324752 68324770 CTTTCATCCAAGAGCTGGG 58 68263263 68324708 GATATGTGAGCCTCTGCTC 58 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 1 2 2 81 6 111184621 111184642 GAAGTACTGTGTAGGAGATGAG 58 111185566 111186231 CACCTTGAACCTTTCAGCA 58 NA Rattus norvegicus 81 Mir3099 ENSRNOG00000046704 ENSRNOT00000070831 1 1 1 60 1 70136998 70137019 GATGTTTCAGTATGCACATAGG 57 70136959 70136977 CGATGCTCTCATCTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r10 ENSRNOG00000011191 ENSRNOT00000014883 2 1 1 81 1 86115258 86115279 GACTTCATCAAGTTCAAATGCG 59 86115319 86122654 TTCAGGAAAGTGTTAAGCTGC 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 3 2 2 80 7 123278327 123278350 GTTTAAAGAACTTGTCTACCCTCC 60 123278388 123280273 GCAGAACCTTCATTGTCTGC 60 NA Rattus norvegicus 81 Itgb3 ENSRNOG00000048449 ENSRNOT00000073350 3 1 1 80 10 92706936 92706956 GTGAGTGTGATGACTTCTCCT 60 92712890 92745399 CACAATCTCCACAAGAGCAC 59 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000087638 3 1 5 60 20 3404937 3404955 TTAAGACAGGGCAAGGTGG 60 3404895 3404913 TACTTCTGCCTCCCTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp24a1 ENSRNOG00000013062 ENSRNOT00000046011 2 1 1 80 3 168101052 168101072 CAAGTGTGCCATTTACAACTC 58 168100304 168101011 TTAACACTGTTCCTTTGGGT 57 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345,ENSRNOT00000045237 1 2 2 80 5 160139302 160139322 CATCGCTCATTTCTGACTTGG 60 160138774 160139260 ATCCCTTTGATGGAGCCTG 60 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000019724 1 1 2 86 9 84412639 84418025 GATCTACACTGTTGCTGCG 59 84418075 84418093 TTCTCAGCAGACACTGAGC 60 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000075862 1 1 4 73 X 70460283 70460302 GTTCTTGTCTTTCAGTTGGG 57 70459702 70460247 ACCTTGGAGATGAAGATGC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000075862 2 1 4 74 X 70460283 70460302 GTTCTTGTCTTTCAGTTGGG 57 70459701 70460247 CACCTTGGAGATGAAGATGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927,ENSRNOT00000008763 2 2 2 60 4 150485240 150485259 GTCAGAACTCTCAGCTAGGG 59 150485199 150485220 ACGAAAGTTCTTCCACATTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 2 2 2 84 7 11239681 11239700 CTTTGTAGTGGCTGTCAAGC 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 1 3 3 92 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671231 52675780 AGTGCTCTTCTCGGTAACAC 60 NA Rattus norvegicus 81 Rfc4 ENSRNOG00000001816 ENSRNOT00000002487 2 1 1 80 11 81372523 81372544 CAACCATTGAGGGAATAGTCAC 59 81372581 81372716 CATCTATTAGGTTCTTCAGCACG 59 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 1 2 2 91 1 80307606 80307949 GATCCGTGAGAAGGTCCTG 60 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Cops6 ENSRNOG00000001346 ENSRNOT00000001820 1 1 1 80 12 19305399 19305418 GAACGTATCGGTGTAGACCA 59 19305460 19305562 TATGAGGTGTTCAGCCACAG 60 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229,ENSRNOT00000014023 3 2 2 80 4 7706695 7707544 CACTGCTGGTTGCTAATGC 60 7707586 7707606 GAATACACCGTGTACCTTCCT 60 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 1 2 2 85 3 11773728 11782759 ACTATGTGAAGTTCTCCAAGGA 59 11782805 11782823 GAGCTTCAGCTCTTCCTCC 60 NA Rattus norvegicus 81 RGD1559588 ENSRNOG00000049331 ENSRNOT00000072303 1 1 1 80 12 19714491 19714510 TTCCTGAACAGAATCTGGCT 59 19714553 19714866 CTGCTGAATTCCCAGTGTG 59 NA Rattus norvegicus 81 Sh2d5 ENSRNOG00000014909 ENSRNOT00000020069 1 1 1 83 5 156622506 156622524 CAGCTGTCACAGAATGTCC 59 156622571 156622711 CAGCTCCTTCCCATTACTG 58 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747,ENSRNOT00000082150 2 2 2 80 12 44935819 44935838 TTAAGCTTGTGATCCTGGAC 58 44935879 44936878 TGAACTTCTCAATCACTCGTC 58 NA Rattus norvegicus 81 Il1rapl1 ENSRNOG00000029663 ENSRNOT00000076283 1 1 1 80 X 55765953 55765971 TCTGACTGATAAGCCACCT 58 55497067 55765909 GCTGAACCACCTAGTTGAG 58 NA Rattus norvegicus 81 Fam131a ENSRNOG00000045653 ENSRNOT00000073526 1 1 1 84 11 82879545 82879731 CCCTGCATGGTATTTCCCA 60 82879479 82879497 TCGATAAGGTGAGCCACAC 60 NA Rattus norvegicus 81 Skap2 ENSRNOG00000012228 ENSRNOT00000016608 3 1 1 80 4 81952191 81959517 TTTCAAGACAAAGGTGATGCC 60 81952131 81952150 GGCTAAGGAAATCGTGTCTG 59 NA Rattus norvegicus 81 Zfp512 ENSRNOG00000039815 ENSRNOT00000006658 2 1 1 80 6 26300684 26314107 TGGGAGCTAAGAATAACAGGAC 60 26300625 26300644 TCAAGGAGTCTTCATGAGGG 59 NA Rattus norvegicus 81 AABR07009508.1 ENSRNOG00000021867 ENSRNOT00000032342 1 1 1 82 2 100955162 100955180 ACGACTACAGTTGCAAGGT 59 100955226 100955565 GATGTCCATGGAAGGAGGG 60 NA Rattus norvegicus 81 Fbxl20 ENSRNOG00000005081 ENSRNOT00000067317 3 1 1 80 10 86052863 86052882 TTCAAGCACTAGTGAGAGGC 60 86051400 86052823 TGAGAGCTTCATCTTCTAGCTG 60 NA Rattus norvegicus 81 Inadl ENSRNOG00000007551 ENSRNOT00000010211 3 1 1 80 5 117064324 117064344 GATAGTTGGAGGCAAATCCAG 59 117064385 117071687 TGTAGTCTTCCATCTCGGTC 59 NA Rattus norvegicus 81 Gopc ENSRNOG00000000408 ENSRNOT00000057476 3 1 1 80 20 33488776 33488794 TCCAGGCTGAAGTTTATGG 57 33487729 33488733 ACTGTATTTGTTGGACCCTG 58 NA Rattus norvegicus 81 Pf4 ENSRNOG00000028015 ENSRNOT00000033406 2 1 1 82 14 18848824 18848842 CCATCTCAAACGCATCACC 59 18848623 18848778 TCTTCAGCGTGGCTATGAG 60 NA Rattus norvegicus 81 RGD1304870 ENSRNOG00000029479 ENSRNOT00000051823 2 1 1 60 10 76281062 76281080 CTGTTCAAGGATGACCAGC 59 76281104 76281122 TAGTGAAGCCACAGTCTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304870 ENSRNOG00000029479 ENSRNOT00000051823 3 1 1 60 10 76281118 76281137 CACTAGCCAGATAGCAAAGG 58 76281160 76281178 GTCTTCTCTGAACACCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1386 ENSRNOG00000046838 ENSRNOT00000047186 2 1 1 60 10 34383578 34383596 CTTCTTCCTCAGTCAGCTC 57 34383618 34383638 CTTTGGCACAATGTTACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 2 2 2 80 7 11306846 11307048 GACCTTATCTTACAGATCAACGG 59 11307086 11307106 CTCTGACTTCTCAATGAGCCT 60 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 3 2 2 80 2 197981407 197981426 TCTGAAGTTCATTGCCAGGA 59 197975043 197981365 GTGAGGATTCTGTTCAGGGT 60 NA Rattus norvegicus 81 Yjefn3 ENSRNOG00000039191 ENSRNOT00000065345 2 1 1 95 16 21286813 21286922 TACGGGTGTTCGAATACCAG 60 21286980 21286998 TGTCCATCTTCTCGCACTG 60 NA Rattus norvegicus 81 LOC100364634 ENSRNOG00000049529 ENSRNOT00000039088 3 1 1 60 1 66774787 66774806 AATGTGTCTGGTCATCATGG 58 66774746 66774764 GTGCTTGTGTAGGACAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt3a ENSRNOG00000003039 ENSRNOT00000064505 2 1 1 125 10 45627826 45637953 TTCTTCTCTGGTCCTTGGC 59 45627719 45627738 TGATCTCCACGTAGTTCCTG 59 NA Rattus norvegicus 81 Trim55 ENSRNOG00000012723 ENSRNOT00000017125 3 1 1 81 2 104439136 104439155 AACAACTTCACAGTCAACCT 58 104439197 104440413 CGTCTTCATCTTCCTCTTCTC 58 NA Rattus norvegicus 81 AC107446.1 ENSRNOG00000023090 ENSRNOT00000030413 2 1 1 88 3 57743108 57743126 CTGCTTAACTCTGCGTCTG 59 57743038 57743056 CTAAATGGAGGCAACGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc4 ENSRNOG00000046599 ENSRNOT00000065472 2 1 1 61 19 54652216 54652236 AAGATGGAGAAGAAAGTGTCC 58 54652025 54652043 GTAAACGAGGAGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 100 19 43269795 43269813 AGATGATGGTGGAGCAGAG 59 43269877 43270250 AACATCAATACCACGGGCA 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 2 5 5 101 19 43269795 43269813 AGATGATGGTGGAGCAGAG 59 43269878 43270251 CAACATCAATACCACGGGC 59 NA Rattus norvegicus 81 Gphb5 ENSRNOG00000021885 ENSRNOT00000031076 1 1 1 82 6 98380684 98382862 GTGAGACCTGGGAGAAACC 60 98380620 98380640 CTGTCTGGTCTCATTGTAGGT 59 NA Rattus norvegicus 81 Zfp219 ENSRNOG00000011544 ENSRNOT00000015418 3 1 1 65 15 28403723 28403742 CACCTCAAAGTGCATCTTCG 60 28403442 28403460 ATAGTCGCAGTGTGGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Dnajc24 ENSRNOG00000004842 ENSRNOT00000006431 2 1 1 80 3 96030005 96030026 AAGATGAGCTAAGAAATGTGGG 59 96025781 96029966 AAGACTCCTCATCTTTGTTCC 58 NA Rattus norvegicus 81 Gabre ENSRNOG00000061182 ENSRNOT00000087138 2 1 1 80 X 152227077 152227099 GTATGATATCACCATACCCAACC 59 152226323 152227039 TCAATGGTCATCCTAACTGTG 58 NA Rattus norvegicus 81 LOC100362692 ENSRNOG00000042281 ENSRNOT00000064503 2 1 1 60 15 41508928 41508948 CGAAACCAACCAAGAATTCAC 58 41508888 41508907 GCACTTGAAGTTGATGGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362692 ENSRNOG00000042281 ENSRNOT00000064503 3 1 1 60 15 41508812 41508830 GAGTCCTCAGTCTTGTTCC 57 41508770 41508790 CTTGGCCTTCTTTATCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027063,ENSRNOT00000078153,ENSRNOT00000027062 2 3 3 107 1 100599236 100599254 GATTGAAACCAACAGGGCA 59 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Anlnl1 ENSRNOG00000018113 ENSRNOT00000024361 2 1 1 84 17 66550897 66551128 CCATTAGCAACAAGTACTGCA 59 66551171 66551192 CATTGGAAACATCATTCAGGGT 59 NA Rattus norvegicus 81 Pramel1 ENSRNOG00000027328 ENSRNOT00000038858 1 1 1 80 5 162162040 162162058 CTGAAATGCCTCCAGATCC 58 162162100 162162809 CTTTAGCCACCAGAATAGCTC 59 NA Rattus norvegicus 81 Pramel1 ENSRNOG00000027328 ENSRNOT00000038858 2 1 1 80 5 162162040 162162059 CTGAAATGCCTCCAGATCCT 60 162162100 162162809 CTTTAGCCACCAGAATAGCTC 59 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000085000 2 1 2 82 10 85629284 85631288 CCGAAGTAAGAATCAGCCCT 60 85631333 85631351 CTTCGGCCTTGAACTTGAG 59 NA Rattus norvegicus 81 LOC100909653 ENSRNOG00000045602 ENSRNOT00000073965 3 1 1 60 3 103264929 103264947 GCATGATGGGAAACTCCCT 60 103264887 103264908 GGAGAATGTAAGTGAGGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000079735,ENSRNOT00000088239 1 4 7 89 9 43766441 43768282 GTCCACAACTTCAGGTTGG 59 43768335 43768353 GAGCTATAACAATGGCGGG 59 NA Rattus norvegicus 81 Mptx ENSRNOG00000046165 ENSRNOT00000073147 1 1 1 80 13 91773594 91776351 GAGGTATATCACAATCAGACATGG 59 91773537 91773556 GTATCAGGGACACATAGGCA 59 NA Rattus norvegicus 81 Cend1 ENSRNOG00000018448 ENSRNOT00000024867 3 1 1 112 1 213973130 213973148 AAACTCCTGAGCACTCCTC 59 213971727 213973057 GGCATTATATGGGTCTTACGTC 59 NA InUTR Rattus norvegicus 81 Cited1 ENSRNOG00000003189 ENSRNOT00000077678 3 1 1 81 X 72130206 72130224 CCCAGACTCTGAAATGCCA 60 72129615 72130162 GTTGGCATCTTCCTTTCCAG 59 NA Rattus norvegicus 81 Cdc123 ENSRNOG00000017770 ENSRNOT00000024016 3 1 1 80 17 76428555 76428575 CCAAGAAGCTATCAATTCGCT 59 76428616 76431430 GCTATCCAGTATGCATCCCT 59 NA Rattus norvegicus 81 Olr1588 ENSRNOG00000003509 ENSRNOT00000004659 1 1 1 60 13 92147198 92147219 TTCATCATCCTTGTCACTTTCC 59 92147240 92147258 CAGCACCAATGATTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1589 ENSRNOG00000022387 ENSRNOT00000030794 3 1 1 60 13 92168341 92168361 CAAGAAGAAAGCATTCTCGAC 58 92168381 92168401 CCCATAGAAGATGAGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guk1 ENSRNOG00000002928 ENSRNOT00000003926 3 1 1 81 10 45536278 45536297 CTTGTTTGACCTGGTGATCG 59 45535941 45536236 CTTGATTTCCTCAGACAGTGC 59 NA Rattus norvegicus 81 LOC685184 ENSRNOG00000024700 ENSRNOT00000034341 1 1 1 80 3 54734185 54734206 TGATGTGAACACAGTAAAGAGC 59 54734247 54735536 AGAGCAGTCCTGTACTTCC 58 NA Rattus norvegicus 81 Pth2 ENSRNOG00000020681 ENSRNOT00000028072 3 1 1 217 1 101178273 101178291 CTTCTACTGCTTGTGCCCT 60 101178641 101178659 TGCATGTAAGAGTCCAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Tppp2 ENSRNOG00000025473 ENSRNOT00000048723 3 1 1 80 15 28319277 28319295 AAAGACTGTGGCATCATGG 58 28319336 28320074 ATTCTTGGCCTTCACTTTACTG 59 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 1 1 1 62 15 28415134 28415477 TACCAGGAGCTACAGGAGG 60 28415502 28415521 GGGATCATTCTCCAAACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cox4i1 ENSRNOG00000017817 ENSRNOT00000024033 1 1 1 80 19 54250553 54250964 TGAGAAAGTCCAATTGTACCG 58 54251005 54251024 ACTGTCTTCCACTCATTGGT 59 NA Rattus norvegicus 81 Fbxo38 ENSRNOG00000019063 ENSRNOT00000025790 3 1 1 80 18 57847302 57847321 CCTGTATCAAGTATCTGGCG 58 57845683 57847264 TCCATCTAGAGTGATCTGATATCC 59 NA Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000076244 3 1 2 95 12 22452859 22452968 TTCAAGTGAAGGTCGTGGT 59 22453026 22453045 TTATGAACTCCAGCAGCTCC 60 NA Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000077058 1 1 2 83 12 22453769 22453883 AGTACTTTGGTCGGTGTGG 60 22453930 22453948 TATGGAAGACACGGTCCAG 59 NA Rattus norvegicus 81 Etv3 ENSRNOG00000043095 ENSRNOT00000021577 2 1 1 85 2 186876389 186882596 CTCAAGTGGTGTGGTTCCT 60 186882643 186882663 GAGAATGGGTGTCTAGAGGTG 60 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155,ENSRNOT00000085132 2 2 2 80 3 112094282 112094591 ATGGCCTGAAGATATTCACTG 58 112094222 112094243 TCTCTATCAAGAAGTTGAGCAC 58 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000073549 1 1 2 80 3 55462462 55464615 TGAAACAGGTCCAGGAAGTC 60 55464658 55464676 TTTAAGGCGGCTGTTACCA 60 NA Rattus norvegicus 81 P2ry13 ENSRNOG00000029756 ENSRNOT00000051027 3 1 1 60 2 149431363 149431382 ATGGCTGTCTTCTTTGTCTG 58 149431322 149431341 TGTGGGTGTATGGTACTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 1 2 2 80 10 45916073 45916091 AGACATGGGACTCAAGCTC 59 45916134 45916567 CTGCAGTTGTCTAACTCCAG 58 NA Rattus norvegicus 81 Emc6 ENSRNOG00000019352 ENSRNOT00000026168 1 1 1 60 10 59742823 59742843 TACGGCTTCATCTTCTACCTG 59 59742783 59742803 CTTTGAGAATTAGGAGCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 3 2 2 80 8 99905572 99905591 CCTGGTTTGGAATACTTGGC 59 99908535 99909566 AAAGCGTGTCATCAATTCCAG 60 NA Rattus norvegicus 81 Prr27 ENSRNOG00000023342 ENSRNOT00000036314 2 1 1 80 14 21886396 21889809 TCCCTTCATTCACAAGAAATCG 59 21884951 21884972 TTCAGAGATGGTTTAAGTGGGT 60 NA Rattus norvegicus 81 AABR07032503.1 ENSRNOG00000038598 ENSRNOT00000058894 3 1 1 81 18 68929987 68931079 CACTTAAGCCCAAAGGTGG 59 68929924 68929942 TTGGGAGGAAGGTTGATCC 59 NA Rattus norvegicus 81 Dnm3 ENSRNOG00000026490 ENSRNOT00000067653 3 1 1 80 13 80307796 80307814 ACTTTCTTCCTCGAGGCTC 59 80251572 80307754 CGGCATATTCTGCTTTAGAGG 59 NA Rattus norvegicus 81 Rn60_X_0694.2 ENSRNOG00000022855 ENSRNOT00000049324 1 1 1 60 X 68476540 68476559 CAGGAAGCATGTGATAAGGG 59 68476582 68476600 CTTGGTTGAAGGTCTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948,ENSRNOT00000044810 3 2 2 80 4 21892672 21892690 TGAACTGGAAACAGAGTGG 57 21892733 21893779 CATCAAGCTCAGCTATCCTG 58 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000089099,ENSRNOT00000077784,ENSRNOT00000078830,ENSRNOT00000080888 2 6 7 80 5 165996435 165996746 AGAAGTTAGAGCAGGCTCAG 59 165996374 165996393 TGTTTAGCCCAGTTACTGGA 59 NA Rattus norvegicus 81 Sirt6 ENSRNOG00000006393 ENSRNOT00000008758 1 1 1 80 7 10937657 10937675 GTCGGTGAATTATGCAGCA 59 10937718 10938614 TCTGGTGGGTCGAATATCTC 59 NA Rattus norvegicus 81 Dcp1a ENSRNOG00000016015 ENSRNOT00000021475 3 1 1 80 16 6544709 6547078 TTTGTATACCGAAGGTCAGC 58 6547121 6547139 TGGTTCAACCAGATTGTGC 59 NA Rattus norvegicus 81 Nt5dc1 ENSRNOG00000000546 ENSRNOT00000000657 2 1 1 80 20 41127176 41128731 GTTACATCCTTGGGAAGGAC 58 41127115 41127134 AATGTGAGAAGAATCCTGGC 58 NA Rattus norvegicus 81 Ces2g ENSRNOG00000013808 ENSRNOT00000048385 1 1 1 80 19 37031150 37031573 GGGCATGAAACTTAACCTCAC 60 37031613 37031633 TATCTTGCAAAGTTTGCCCAG 60 NA Rattus norvegicus 81 Olr27 ENSRNOG00000050559 ENSRNOT00000044676 1 1 1 60 1 150172920 150172941 TCTCCTCTACATTATGAAGCCA 59 150172881 150172901 AAACACCTAACATCAGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spert ENSRNOG00000047413 ENSRNOT00000072138 1 1 1 137 15 57643929 57650546 ATGTGATTCTACCTCAGAGGG 59 57643812 57643830 GGTTGAGTGGGTAGGAGTG 59 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000049438 ENSRNOT00000072853 2 1 1 60 3 75167693 75167711 GTTGCCATCAAACACAGGA 59 75167651 75167672 AACTATAAGGTGGGAAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 2 2 2 80 2 195744537 195744556 ATGTTATCACAGCCATCAGC 59 195744014 195744495 CTATTACCTGGTTCTCCAGC 58 NA Rattus norvegicus 81 Olr649 ENSRNOG00000054715 ENSRNOT00000078540 2 1 1 60 3 77073081 77073099 AAAGCAGTCATCAGAAGGG 57 77073123 77073141 AACAGCAATGTGAGATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kera ENSRNOG00000004635 ENSRNOT00000006234 3 1 1 60 7 38860504 38860522 CTACAGCATCTACACCTGG 57 38864613 38864634 GACATATTACCGACATGTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 LOC688906 ENSRNOG00000005263 ENSRNOT00000007003 3 1 1 80 7 137815759 137815778 TGATTAGGCAGAAACGACAG 58 137814207 137815716 GTACAGAGCCAACTCTTCC 58 NA Rattus norvegicus 81 Tbxa2r ENSRNOG00000020585 ENSRNOT00000027932 1 1 1 80 7 11254780 11254798 TGGAGATGATGGTTCAGCT 58 11253897 11254736 TCTGCAGGATGAAGACCAG 59 NA Rattus norvegicus 81 Zmpste24 ENSRNOG00000012054 ENSRNOT00000016410 3 1 1 80 5 139987434 139987452 TATGACAGCCAACCCACTC 59 139984340 139987395 GAAAGACAGAACCTCATTGTAAGG 60 NA Rattus norvegicus 81 LOC100360432 ENSRNOG00000032925 ENSRNOT00000052236 3 1 1 61 3 151691688 151691708 CCACATTTCCTATCTCTTGCC 59 151691728 151691749 CTCAAGGTGGTTGATGTAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth1 ENSRNOG00000043381 ENSRNOT00000004196 3 1 1 80 10 107205759 107212048 AATACACCACGGACAAAGAG 58 107205698 107205716 GCTTCTTGGAGTCTTCCAC 58 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487,ENSRNOT00000029757 3 2 2 80 15 48139470 48139488 GGACACCTCTTCATCTCCC 59 48139530 48140546 ATGTTAACACTGAACTCGCTG 59 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 1 2 2 80 4 99410038 99413192 CAGTGATCCCAGGTACTGC 60 99413234 99413254 TTAGATGTGCTTGTTTGTGGG 59 NA Rattus norvegicus 81 Upf3b ENSRNOG00000039994 ENSRNOT00000032618 2 1 1 81 X 123730309 123731153 GAAGCTTTGAGCAAGGTCG 60 123730246 123730267 GCATAGGTTGAAGATGTTCCTG 60 NA Rattus norvegicus 81 Tmtc3 ENSRNOG00000006749 ENSRNOT00000029045 2 1 1 80 7 40207598 40208651 ACTCCTATGTCTGAGGAGAG 57 40207537 40207557 ACTGAGGAGGTAATTTAAGCG 58 NA Rattus norvegicus 81 RGD1560065 ENSRNOG00000014857 ENSRNOT00000019964 3 1 1 84 2 251819130 251819148 GACAATGGTGATGATGCCC 59 251819195 251823758 TGTCATCGTCTGATTCCACC 60 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827,ENSRNOT00000025070 1 2 2 80 4 118885378 118891770 CCAGTACAAAGGCTTACACC 59 118891811 118891831 GCATGGAGATTCTGTCATCAC 59 NA Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000086272 3 1 2 81 20 10267453 10275080 GTGTTCAAAGAGCCCACAC 59 10275124 10275143 ATGCGTTGTACTCATGATGC 59 NA Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000001319 2 1 2 80 12 11288330 11288352 CATCTACAAGAAGAATGGGAGTC 59 11284636 11288293 CAGTCAATACCTGTGATGTGTC 59 NA Rattus norvegicus 81 Rapgefl1 ENSRNOG00000027871 ENSRNOT00000030425 3 1 1 81 10 86763460 86763480 TTGTCATCTCCTAGCATTCAG 58 86763523 86763792 TCCATGTCTAGACAGAGGG 58 NA InUTR Rattus norvegicus 81 Pomp ENSRNOG00000048470 ENSRNOT00000073155 1 1 1 91 12 8757630 8759421 TCCAAGATGAACGCCAGAG 60 8757557 8757575 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 Etv3l ENSRNOG00000043511 ENSRNOT00000057490 1 1 1 91 2 186905557 186905575 GATCCAGATGAAGTGGCTC 58 186905630 186905856 TAGTAATACCTGAGGGCCC 58 NA Rattus norvegicus 81 Olr801 ENSRNOG00000061052 ENSRNOT00000077384 1 1 1 60 4 71869548 71869566 AGCCTTTGGTACTTGTGCT 60 71869506 71869524 AAGGGCCATCCCATAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr801 ENSRNOG00000061052 ENSRNOT00000077384 2 1 1 60 4 71870243 71870262 CAATGCAACCTGGGTAAGTG 60 71870202 71870221 TTGGATGTGTTTGTCACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000048482 3 1 5 81 14 22609383 22610059 AATGACCTTCTTGGTCATCCA 60 22610097 22610120 CATGATGGATTGACTCATAGATGC 60 NA Rattus norvegicus 81 Hdac8 ENSRNOG00000003122 ENSRNOT00000004224 2 1 1 80 X 72365000 72365020 TCAACATCTCCAGAAGGTCAG 60 72363350 72364959 GGGCAGTCATAACCTAGTCC 60 NA Rattus norvegicus 81 Hdac8 ENSRNOG00000003122 ENSRNOT00000004224 3 1 1 80 X 72365000 72365019 CAACATCTCCAGAAGGTCAG 58 72363349 72364958 TGGGCAGTCATAACCTAGTC 59 NA Rattus norvegicus 81 Rn60_18_0774.2 ENSRNOG00000053391 ENSRNOT00000091156 1 1 1 60 18 78283039 78283057 ATTCCACCCAACATTCCTC 57 78283075 78283099 CCTATATCACCAGAGAAGAATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh3b2 ENSRNOG00000017872 ENSRNOT00000024034 3 1 1 80 1 219202478 219205075 AATGTGGAGGTCATCAAACAG 59 219205117 219205135 GGTCATGTGCATAAAGCCA 59 NA Rattus norvegicus 81 Hephl1 ENSRNOG00000056092 ENSRNOT00000081616 1 1 1 80 8 13680751 13680774 GTGGAAGAATACTGGAACTATGTG 59 13663623 13680712 GGTCGCAAGTTTGTCTTCC 60 NA Rattus norvegicus 81 LOC100911595 ENSRNOG00000046581 ENSRNOT00000075061 1 1 1 94 5 67709291 67709309 ATGATGGAGCTGGACTTGG 60 67709366 67710825 TCCTGTGCTTTCTGACTCTC 60 NA Rattus norvegicus 81 Uqcrb ENSRNOG00000024967 ENSRNOT00000037030 3 1 1 80 7 71265887 71265905 CCTAGACCTGTCTATGCGG 59 71265242 71265847 GGTTCAAGGTAGAATTTGTCCTC 60 NA Rattus norvegicus 81 Pcdhb9 ENSRNOG00000020072 ENSRNOT00000027188 1 1 1 60 18 30477393 30477414 GTCCCAAAGTTACCAGTATGAG 59 30477435 30477453 CTTGAACTCACCAGTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plagl1 ENSRNOG00000025587 ENSRNOT00000030329 2 1 1 84 1 7252687 7254751 TAAGCTGATGAGACACATGG 57 7254798 7254816 ATCCTTCCGGTTGAAAGTC 58 NA Rattus norvegicus 81 Gpr6 ENSRNOG00000049580 ENSRNOT00000073276 1 1 1 60 20 45814313 45814331 CCATCTACACCTATGCCAC 57 45814271 45814291 ATGATGGGATTGATCATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr6 ENSRNOG00000049580 ENSRNOT00000073276 3 1 1 60 20 45814311 45814329 ATCTACACCTATGCCACCC 59 45814269 45814289 AGATGATGGGATTGATCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pilra ENSRNOG00000033017 ENSRNOT00000039797 3 1 1 81 12 21679407 21679427 TCTTCTGCAAACAACAGAAGG 59 21679470 21683838 GGTGCTGGTGTTATTGGTC 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586,ENSRNOT00000018556 3 2 2 80 1 15928078 15930057 GACAAATGGGAACAGTCTGG 59 15928017 15928037 ATGTCAAGCTTGAAATGGTGG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793 2 7 8 80 6 64810684 64810702 AGAGGGCAATGAAAGTCAC 58 64810746 64812926 GGAGTAGGTAGGCCTTCTG 59 NA Rattus norvegicus 81 Clca1 ENSRNOG00000060831 ENSRNOT00000084996 1 1 1 80 2 250923585 250923603 ATGAAGGCATCGTCATTGC 59 250918693 250923543 GAGTCACCATGTCCTTTATCC 58 NA Rattus norvegicus 81 Lpar5 ENSRNOG00000021401 ENSRNOT00000029053 1 1 1 60 4 157594678 157594696 CCAACACCTCTTCTACCGA 59 157594719 157594738 CGATGTGTACTCCGATAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxa5 ENSRNOG00000047951 ENSRNOT00000074167 3 1 1 86 4 82171441 82172418 ATTAGTCACGACAACATAGGTG 58 82171376 82171394 TTCTTTCTCCAGCTCCAGG 59 NA Rattus norvegicus 81 Ints1 ENSRNOG00000022599 ENSRNOT00000060370 3 1 1 80 12 16957672 16958275 TGACCGCAATTTCTTCCTG 59 16958319 16958337 AGTCCAATGACCAGGATCC 59 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000079763,ENSRNOT00000005467 2 2 2 80 13 94838290 94838309 CTCTGCTGCAGTAGTAATGG 58 94835630 94838250 GATGAAGATATGGCTTCCTCTG 59 NA Rattus norvegicus 81 Kat5 ENSRNOG00000061012 ENSRNOT00000088799 2 1 1 80 1 220968758 220970438 TGAGTTCAGCTATGAACTCTC 57 220968698 220968718 GATAGAAGGCCAAGATCTGAC 58 NA Rattus norvegicus 81 Hbe1 ENSRNOG00000029286 ENSRNOT00000043719 3 1 1 82 1 169005143 169005161 AAAGAGCCTCATCAATGGC 58 169004961 169005097 ACACAACGAGAAGTCTTCC 57 NA Rattus norvegicus 81 Rn60_X_0693.1 ENSRNOG00000051289 ENSRNOT00000076559 2 1 1 60 X 68408640 68408659 GGCAAAGCACTATCACAAGG 60 68408681 68408700 CCTAGCCATGTGAATCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680273 ENSRNOG00000039296 ENSRNOT00000060192 1 1 1 80 12 17904201 17904219 CAATGATGACGCTGACGAC 59 17903409 17904157 GCGATGTAGCTGTATGCTG 59 NA Rattus norvegicus 81 RGD1559962 ENSRNOG00000026462 ENSRNOT00000036049 1 1 1 60 1 20417586 20417604 AAGATGTCCTCGTATGCCT 58 20417544 20417563 GATGCTTATTCTTGTGCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss8 ENSRNOG00000019616 ENSRNOT00000026572 2 1 1 97 1 199375060 199376513 GACTGAAGCTTCCTGTGGT 60 199374981 199374999 TGTAGGTGATGCTGACCTG 59 NA Rattus norvegicus 81 Myod1 ENSRNOG00000011306 ENSRNOT00000015109 3 1 1 84 1 102397364 102397838 CTGATGGCATGATGGATTACAG 59 102397883 102397901 GACGCCTCACTGTAGTAGG 59 NA Rattus norvegicus 81 Tyw1 ENSRNOG00000024352 ENSRNOT00000038092 2 1 1 80 12 29866233 29869552 CCTGAGGAAATCAGGAACCT 59 29866172 29866191 CTTCTTCAGGCTGTCTTTGG 59 NA Rattus norvegicus 81 Myh7b ENSRNOG00000018997 ENSRNOT00000025859 2 1 1 80 3 151144000 151144018 AGGACATTGATGACCTGGA 58 151144059 151144758 TCAGGTTCTTCACCTTATTCTC 58 NA Rattus norvegicus 81 Olr1622 ENSRNOG00000008804 ENSRNOT00000011636 3 1 1 60 15 27439125 27439144 TATGTCCTTCTCTGGATGCT 58 27439167 27439185 TTCAGTTGTACCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph4a ENSRNOG00000049696 ENSRNOT00000036449 2 1 1 80 20 32463982 32464000 CCTGACTACGTAGAGCAGG 59 32464038 32464766 AGAGGGTATATTCTGAATCTCTAGG 59 NA Rattus norvegicus 81 Rsph4a ENSRNOG00000049696 ENSRNOT00000036449 3 1 1 80 20 32463981 32463999 GCCTGACTACGTAGAGCAG 60 32464037 32464765 GAGGGTATATTCTGAATCTCTAGGT 59 NA Rattus norvegicus 81 Nog ENSRNOG00000023683 ENSRNOT00000032388 3 1 1 60 10 76813032 76813051 CTATCTACACATCCGCCCAG 60 76812991 76813009 ATGTTCGATGAGGTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r3d ENSRNOG00000053869 ENSRNOT00000090468 3 1 1 64 3 173952641 173952659 TTACTTGTCGCAGTCATGC 59 173952595 173952613 GAAGTGGATCCAGCTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf12l1 ENSRNOG00000023458 ENSRNOT00000038653 2 1 1 126 X 131342605 131342623 ATGGCTACTTCCACCTGTG 59 131342308 131342515 GAACCCACAGCATAGAGGG 60 NA Rattus norvegicus 81 Foxh1 ENSRNOG00000015371 ENSRNOT00000020696 3 1 1 80 7 117732160 117732178 ACTTACTTGGCCATGATCG 58 117731834 117732117 GACCTGACGGATAATCTGAG 57 NA Rattus norvegicus 81 Olr1635 ENSRNOG00000031108 ENSRNOT00000040096 1 1 1 60 15 27549350 27549368 CTTCCTGGCAGTAATGGCT 60 27549308 27549326 AGGGTAATGTAATGGGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zufsp ENSRNOG00000000398 ENSRNOT00000000448 1 1 1 80 20 32481183 32482852 CACTGAAAGTCAAGTGCCG 60 32481121 32481139 TCCACTCGAATAAGCGAGG 59 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 1 2 2 83 12 22105895 22105913 CTCTTCTGCCTTTGGAAGC 59 22105960 22106815 GTTAGCATCCGATTGGCTG 59 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391,ENSRNOT00000033806 2 2 2 80 14 20750015 20769500 GAAGTAGAAGGTCACCACAC 58 20749954 20749973 CTTTCTCTTATGGCGTCTCC 58 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062 3 1 5 60 9 81675983 81676002 CCTCATACGTCTTCCATCCA 59 81676466 81676486 CTCATGTTGTCAAACCACGAG 60 NA DesignNoJunction Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 2 2 2 80 18 68987280 68992051 GGAAACCTATACCGTATTGAAGG 59 68992088 68992109 TCTGTGTTCAGATTTGTAGAGG 58 NA Rattus norvegicus 81 Tubal3 ENSRNOG00000028750 ENSRNOT00000036821 2 1 1 81 17 69977013 69982725 CAACCGTTATAGATGGCGTC 59 69976951 69976970 GCATCCTCCTTTCCATTCAC 59 NA Rattus norvegicus 81 Ubqln4 ENSRNOG00000019933 ENSRNOT00000026994 2 1 1 80 2 187917999 187918464 CATCAATTCTTTCTGGCTTTGG 59 187918503 187918523 GCTGTAGCTCCATAAAGTTGG 59 NA Rattus norvegicus 81 Grap ENSRNOG00000002599 ENSRNOT00000003515 1 1 1 80 10 47930710 47930728 CCCTCTACAACTTCCAGGC 60 47930768 47938081 CGTCCATGTTTAGGATCTTAAGC 60 NA Rattus norvegicus 81 Wbp2nl ENSRNOG00000008038 ENSRNOT00000010606 1 1 1 89 7 123540877 123546457 ATACCAAGCTGCCTATGGAG 59 123546509 123546527 GGTGGAACTCCGTATCCTG 60 NA Rattus norvegicus 81 Pate4 ENSRNOG00000039447 ENSRNOT00000060454 2 1 1 82 8 36815788 36816132 CAATCTATCACGGACAACGG 59 36815725 36815743 GTCTCCATTGTAATGCGGT 58 NA Rattus norvegicus 81 Zranb3 ENSRNOG00000003979 ENSRNOT00000005355 2 1 1 80 13 44693430 44697895 ATGCTGAATCGAAAGGCTC 58 44693368 44693388 TTTGTCATCTTCTGTAGCCTG 58 NA Rattus norvegicus 81 Trip11 ENSRNOG00000005292 ENSRNOT00000007061 3 1 1 80 6 125787959 125788543 CAAGAGGCTACTAAGCATGTG 59 125787899 125787920 TCTCTTGATCACACTATCTCCT 58 NA Rattus norvegicus 81 Arl14ep ENSRNOG00000004891 ENSRNOT00000006481 1 1 1 80 3 97989073 97989093 TGTACCCAGATCATCAATGGA 59 97987163 97989031 AGTCCTTCCATCTGACTCG 59 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 1 2 2 80 20 12339793 12339811 AAGACCTCGATCACACTCG 59 12335603 12339751 CATGAAGTAGATGCGGAACTG 59 NA Rattus norvegicus 81 RGD1560730 ENSRNOG00000014266 ENSRNOT00000019103 3 1 1 123 1 104001076 104009816 GAGGGAAGGAACACTAGTGG 60 104000972 104000993 TCATGACTTGAAACTCGATGGA 60 NA Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 1 2 2 80 15 28639432 28639452 TTCAATCCAGACTACGTCGAG 60 28637471 28639393 GATTACAGGCTCACCATTATCC 59 NA Rattus norvegicus 81 Depdc7 ENSRNOG00000012262 ENSRNOT00000016677 2 1 1 80 3 94668771 94670867 TGACTCTCAGGAAGATGAGTG 59 94668711 94668731 CTTATGTCCACAACCATCTGG 59 NA Rattus norvegicus 81 Cacng2 ENSRNOG00000006226 ENSRNOT00000008414 1 1 1 86 7 119351850 119351868 AGTGAGAATGAAACCAGCA 57 119246327 119351800 TTTGAAGTTCCCTTCGAGG 57 NA Rattus norvegicus 81 Suds3 ENSRNOG00000001139 ENSRNOT00000075646 3 1 1 80 12 45202393 45202411 CTGAGGATGCCAGTGAGAC 60 45202454 45205092 TGTCCTGGTACATCTGTTCC 59 NA Rattus norvegicus 81 Kif4a ENSRNOG00000038035 ENSRNOT00000078233 2 1 1 80 X 70498882 70499736 GCTTCAAGATTCTCTAGGAGG 58 70499775 70499796 GTTTCCTCTAGGTTGGAATCAG 59 NA Rattus norvegicus 81 Unc79 ENSRNOG00000008728 ENSRNOT00000011775 1 1 1 80 6 126985003 126985021 CTCTGGTCCCTAAAGCCTC 59 126985059 126985803 GTCTCTGTATGGATACTTGTAAAGG 59 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 2 1 1 60 4 100480817 100480837 AAAGATCCAAAGTCACTCGGA 60 100479045 100480797 AGCTTTAGGTTCAAACGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Pop5 ENSRNOG00000001199 ENSRNOT00000001591 2 1 1 81 12 47139090 47139109 CTTTCATCACGTGTTTGGAG 57 47138860 47139047 GTTCTAATGGTACCTCCCAC 57 NA Rattus norvegicus 81 Qser1 ENSRNOG00000037514 ENSRNOT00000056808 3 1 1 80 3 94715262 94715280 GTTACATGGAGTTGCTCGT 58 94713475 94715218 AAAGAAGCTCATCGTTGCT 58 NA Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000004373,ENSRNOT00000087404 2 2 2 80 10 107471165 107471184 AGTTCAGGAGGAACAACAGG 60 107471226 107473870 GTTTCTTCAGGCCTTGTCAC 60 NA Rattus norvegicus 81 Ythdc1 ENSRNOG00000001996 ENSRNOT00000002736 1 1 1 80 14 22981677 22981698 TTACTAAGTCAGCTCATCTCAC 58 22980645 22981638 GTTCAATTTCCTGTCCATCAC 58 NA Rattus norvegicus 81 Ythdc1 ENSRNOG00000001996 ENSRNOT00000002736 2 1 1 80 14 22981676 22981697 TACTAAGTCAGCTCATCTCACC 59 22980644 22981638 AGTTCAATTTCCTGTCCATCAC 59 NA Rattus norvegicus 81 Akap7 ENSRNOG00000013202 ENSRNOT00000017617 2 1 1 81 1 21142212 21142230 CAGCCCTGTAGGTTCTCTG 60 21142274 21149329 TTGAGGTACATCAGGGAGTC 59 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 1 2 2 80 10 27142650 27145086 CTCCAGTTATGGTTATCCTCGT 60 27142591 27142609 CATGACCTTGTGTCTCCCA 59 NA Rattus norvegicus 81 Zfp449 ENSRNOG00000050562 ENSRNOT00000073827 3 1 1 80 X 73393009 73393033 CAATAGAGAAAGAGTTGTGTCACTC 60 73393069 73397456 TCATCCATGTCAATCTGTGGT 60 NA Rattus norvegicus 81 Olr297 ENSRNOG00000046995 ENSRNOT00000040377 1 1 1 60 1 212940745 212940764 ACTTCTTCTGTGAGATCCCT 58 212940704 212940724 TCATTGATAAAGGTGGAGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962 2 1 10 81 15 32796581 32852780 CTTAGGGTCCATCCAAATGTC 59 32852820 32852841 AGAGGGTGATGTTATCAGACTG 59 NA Rattus norvegicus 81 Pcdhga3 ENSRNOG00000039461 ENSRNOT00000060472 2 1 1 60 18 30821637 30821657 GACAGACATCAATGACAACCC 59 30821675 30821697 TGGGATATAGGCTAAATAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spty2d1 ENSRNOG00000050806 ENSRNOT00000075006 1 1 1 82 1 103120065 103120083 GTGAAAGGTGTCCAGTCAG 58 103119297 103120019 TTCTCTTCCAAGGCTTTCC 57 NA Rattus norvegicus 81 LOC501618 ENSRNOG00000037711 ENSRNOT00000057217 1 1 1 80 X 105427942 105427960 GGGAAACTGAGTCTCAGGG 59 105428001 105428245 CTCCAGCCATATTATTTCCTGC 59 NA Rattus norvegicus 81 Pick1 ENSRNOG00000011507 ENSRNOT00000016077 3 1 1 80 7 120481488 120481817 CATCAAACCGATGCTGACG 60 120481859 120481879 AGGTACTTCTTGATGGTGAGG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000082523 1 1 6 60 20 3428349 3428369 TACAAGTTCTAGTCCCTCCGA 60 3428309 3428331 TCCAGGTATCCATATAGTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC114492 ENSRNOG00000032629 ENSRNOT00000050147 1 1 1 124 X 139261344 139261696 CATTCTTCAAGGCCTGTGAG 59 139261239 139261257 CAAACTGAGTGCTGTCCAG 59 NA InUTR Rattus norvegicus 81 Dnase1 ENSRNOG00000006873 ENSRNOT00000009283 1 1 1 80 10 11758781 11759119 ATACACTGAGGTCCGAGAG 58 11758719 11758737 TAGAGGGCATCGATCTCAC 58 NA Rattus norvegicus 81 AABR07005667.1 ENSRNOG00000024217 ENSRNOT00000029967 3 1 1 80 1 193537766 193537787 TGATGACATCAAGAAGGTAGTG 58 193537825 193537861 TTGAAGTCTTCCTCAATGTAGC 59 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000080132,ENSRNOT00000078692 2 2 4 81 1 102779531 102779551 TTATCCTCTGCTCTTTGTTCC 58 102777916 102779488 TCCCAAGTCCCTTGTATGG 59 NA Rattus norvegicus 81 Ppp1r14c ENSRNOG00000016368 ENSRNOT00000022046 3 1 1 147 1 39812174 39812192 TGGAAGAATGGATCGTGGA 58 39878289 39880392 CAGTCTACAAGAGCTTCCTG 58 NA Rattus norvegicus 81 LOC500877 ENSRNOG00000029292 ENSRNOT00000043257 1 1 1 80 7 101134607 101134626 GTCTACAATGGGAAGGTCTG 58 101123631 101134564 GCCACTTGCAAATATCCTG 57 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000085925 3 1 2 94 6 44361989 44363881 CCGATTCATGGCGATTCAG 59 44361913 44361932 CTCTGTTCAGAATGAAGCGC 60 NA InUTR Rattus norvegicus 81 Ppid ENSRNOG00000027408 ENSRNOT00000037890 3 1 1 80 2 178363957 178363976 GTGTGCTGAATATTGGTGCT 59 178364019 178365756 TTTCAAGAGCCTCCAAGCA 60 NA Rattus norvegicus 81 Rnf145 ENSRNOG00000004602 ENSRNOT00000006436 3 1 1 80 10 30185871 30185889 GGAGTCTGCCTATGAAGGA 58 30185932 30191503 ACCAACTGACCTATTAAGGC 57 NA Rattus norvegicus 81 LOC502894 ENSRNOG00000051816 ENSRNOT00000091662 1 1 1 88 4 159638151 159639583 TTCGGGAAAGGATGTACGG 60 159638081 159638100 CATGGGACACTCTTCTCCAG 60 NA InUTR Rattus norvegicus 81 Zic2 ENSRNOG00000054879 ENSRNOT00000089455 2 1 1 82 15 108911525 108911545 CAGATAAGCCCTATCTCTGCA 59 108911589 108911774 CTCATGGACCTTCATGTGC 59 NA Rattus norvegicus 81 AABR07017714.1 ENSRNOG00000046417 ENSRNOT00000071631 1 1 1 68 15 30323787 30323805 TACTCCTAGGCCTTCACCT 59 30323599 30323617 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr636 ENSRNOG00000049429 ENSRNOT00000040581 3 1 1 60 3 77289875 77289894 TTTGCTTCCTGTTCTTCTCC 58 77289917 77289935 AGGATCACCAGATTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Duox2 ENSRNOG00000017395 ENSRNOT00000023939 2 1 1 80 3 114234634 114235127 GGCTCTTCTTTGGCTATCAC 59 114234573 114234592 AAATGTTGAGGAACTCTGCG 59 NA Rattus norvegicus 81 Pcdhb2 ENSRNOG00000039476 ENSRNOT00000060497 3 1 1 60 18 30376844 30376865 TATGTCCACATTTACCAACCAC 59 30376883 30376904 GAACACAGCAATTACAGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxd8 ENSRNOG00000042480 ENSRNOT00000067861 2 1 1 80 3 61627847 61627873 AAATTCGTCCAGAATATTGGCG 60 61627911 61627932 CATCTCAGGGAAACGATTTGAG 60 NA Rattus norvegicus 81 Rps4x ENSRNOG00000029574 ENSRNOT00000051149 1 1 1 60 4 35730523 35730541 AATGTCCTCTTTCCGTTCC 58 35730481 35730499 CGCTTCAGATGTTTCTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsd ENSRNOG00000020206 ENSRNOT00000027407 1 1 1 80 1 215548319 215548337 CACATCCTTCGACATCCAC 58 215546724 215548276 GACTTACATGGAACCGACAC 59 NA Rattus norvegicus 81 Ctsd ENSRNOG00000020206 ENSRNOT00000027407 2 1 1 80 1 215551031 215551050 TACTCCATGCAGTCATCTCC 59 215549091 215550988 ACCATAGTACTGGGCATCC 59 NA Rattus norvegicus 81 Rasip1 ENSRNOG00000021004 ENSRNOT00000032535 1 1 1 85 1 101612006 101612024 ACTCAGTGCCTCATTCAGG 59 101612073 101614520 TACACCACGAAGTCCTGAG 59 NA Rattus norvegicus 81 AABR07060190.1 ENSRNOG00000030979 ENSRNOT00000051232 1 1 1 60 4 61502383 61502401 TCAGCTAAAGCATCAGCCT 59 61502341 61502360 CTTTCCGTTAGTCCTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb1 ENSRNOG00000030904 ENSRNOT00000043381 3 1 1 80 2 105070028 105070049 ACTCATACTCACAGATGATGCT 59 105061798 105069987 CCAGGGCATTCAATTCCTC 59 NA Rattus norvegicus 81 Vwde ENSRNOG00000024709 ENSRNOT00000029602 2 1 1 80 4 39696555 39700608 CAAATGCGTTGAGATGAACCA 60 39696495 39696513 GGAAGAGGTAGGGCTTCTG 59 NA Rattus norvegicus 81 Mob3a ENSRNOG00000018971 ENSRNOT00000025634 1 1 1 82 7 11892939 11892963 CTATAAGCACTTCTACTACTTCGTC 59 11893003 11894463 GCGATGTCATCTCCTTCAG 58 NA Rattus norvegicus 81 Chn3 ENSRNOG00000038211 ENSRNOT00000058177 3 1 1 80 18 85990192 85990211 ACTGGTGTGAATATTGTGCC 59 85989957 85990151 GTCCTTCAGATTTCAGACCTG 59 NA Rattus norvegicus 81 Polr2b ENSRNOG00000024779 ENSRNOT00000039252 2 1 1 80 14 33098506 33098525 GCCTAGAGAATTCTTCCCGA 59 33095248 33098463 CACTCTTCTTTGCACCCTG 59 NA Rattus norvegicus 81 Cdh1 ENSRNOG00000020151 ENSRNOT00000027346 2 1 1 80 19 38769451 38769469 CAGTTCCGAGGTCTACACC 60 38769511 38817347 CCTTCAAATTTCACTCTGCCC 60 NA Rattus norvegicus 81 Bik ENSRNOG00000010359 ENSRNOT00000013977 2 1 1 90 7 124409066 124409454 GCTATGCACAGACTTGCTG 59 124409508 124409526 TTTCCCTGAGGTTGGTGAG 59 NA Rattus norvegicus 81 Prim1 ENSRNOG00000031993 ENSRNOT00000065593 1 1 1 80 7 2445430 2445573 CAGTGCACCACAGAATACC 59 2445617 2445635 CGTGGGAAACAGTACTGGA 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 2 2 2 99 2 189893199 189896030 ACTTAAGCAGAGCTTAAAGCAG 59 189893121 189893139 TCTTCCTCCAATTGCTCCC 59 NA Rattus norvegicus 81 Smpd2 ENSRNOG00000000306 ENSRNOT00000000336 1 1 1 80 20 46213866 46213884 TTCTCCAGACACCCAATCC 59 46213697 46213826 GTCTCCATGATAGAACTTGTAGG 58 NA Rattus norvegicus 81 Fxyd3 ENSRNOG00000021095 ENSRNOT00000028637 1 1 1 80 1 89504235 89504339 TGACCCTGAAGATAAAGATAGCC 60 89503472 89503491 AGAATCCCTGCACAGATGAG 60 NA Rattus norvegicus 81 Piwil2 ENSRNOG00000009871 ENSRNOT00000013284 1 1 1 80 15 52043004 52043022 TCCTGACCACTTTGTGACC 60 52042146 52042961 AGGTAGAAATCCACCCACTC 59 NA Rattus norvegicus 81 Ccdc132 ENSRNOG00000009894 ENSRNOT00000067087 1 1 1 80 4 28464197 28464216 TCTGAAGTCACTGAGAACCA 58 28465617 28467003 GGATAGTCCTCTTCCTCCAG 58 NA Rattus norvegicus 81 Perp ENSRNOG00000011994 ENSRNOT00000016037 1 1 1 80 1 14233489 14235436 ACTGGCTGCTGTATTCCAG 60 14235477 14235498 GGATTATCATGAAGCCTGAAGG 59 NA Rattus norvegicus 81 Cebpe ENSRNOG00000014282 ENSRNOT00000019155 3 1 1 254 15 33357142 33357160 GTGAAAGAGGAGCCTCGAG 60 33356353 33356372 GCTATCTTTGTTCACTGCCT 58 NA DesignNoJunction Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 2 2 2 80 1 221743900 221743921 GAGAAGATGAACCTCTTCATGC 59 221743960 221744083 TGTTTCTGATCTGTTCCACTG 58 NA Rattus norvegicus 81 Rbm45 ENSRNOG00000010595 ENSRNOT00000042968 1 1 1 80 3 63223662 63225095 GGAGAAGTTCAAGGTGTATGG 59 63225136 63225155 CCCAAGCCTTTACTTTCTCC 59 NA Rattus norvegicus 81 Cyb5d2 ENSRNOG00000024553 ENSRNOT00000036942 2 1 1 81 10 59355139 59355159 CCTCCTCTGAGATATTGACGT 59 59348571 59355097 CTTCCAATCAGTCTTCCGAC 58 NA Rattus norvegicus 81 Trpv2 ENSRNOG00000003104 ENSRNOT00000004248 2 1 1 80 10 48920725 48922136 CTGGAAGTTGCAGAAAGCC 60 48922178 48922198 CCTTCACGATGTTTCTTCCTC 59 NA Rattus norvegicus 81 Aplnr ENSRNOG00000009227 ENSRNOT00000012379 1 1 1 60 3 72540973 72540991 GGCTGACTTGACCTTTGTG 59 72541012 72541033 AAACTCCCGGTAGGTATAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Leprot ENSRNOG00000050849 ENSRNOT00000007859 1 1 1 82 5 120503456 120503474 TTGTGGCACTCTCCTTCAG 60 120503519 120507127 CCAGTAAACGCCATAGTCCT 60 NA Rattus norvegicus 81 Metrn ENSRNOG00000019692 ENSRNOT00000026676 1 1 1 113 10 15165762 15165780 AACGTGCAGAAATGTCTCC 59 15164786 15164888 CATGGATCACAAAGTCACTGG 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 1 2 2 81 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797741 11797759 TCCATCTCATCGAAGAGGA 57 NA Rattus norvegicus 81 Olr858 ENSRNOG00000050546 ENSRNOT00000073594 1 1 1 60 5 137758282 137758300 TGCCATCATGTCCATAGAC 57 137758323 137758342 GATGACCTTGTACCTGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr461 ENSRNOG00000051828 ENSRNOT00000079401 2 1 1 60 3 73204743 73204765 ACTCAGATGTACTTCTCACTCTC 59 73204783 73204803 CCATGACACCAAGAAGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl7a ENSRNOG00000016641 ENSRNOT00000022395 2 1 1 60 5 73496864 73496884 GATGAACCTGATGAACAACTG 57 73496904 73496924 TTCCACAATACTAAGGTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910318 ENSRNOG00000004419 ENSRNOT00000006006 3 1 1 60 10 37130549 37130570 AATTCTCCTATTCGGTCAACTG 58 37130510 37130531 GATGTTTCTTCCCAAGAAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr441 ENSRNOG00000034115 ENSRNOT00000048581 1 1 1 60 3 72808373 72808395 GACTTCTATCTTCTGGGATTTGG 59 72808335 72808354 ACACGATGAAGAGGATACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306195 ENSRNOG00000031013 ENSRNOT00000050030 1 1 1 83 5 54481793 54482034 CAGGCAAGTGGGATATTGTG 59 54481729 54481747 AGCTTGAACTGGACTGGAG 59 NA InUTR Rattus norvegicus 81 RGD1565222 ENSRNOG00000013317 ENSRNOT00000017857 1 1 1 82 15 33236151 33240018 GATGCTAAACCCAATGGCG 60 33236087 33236105 GTTTGGCATAAGCAGGGAC 59 NA Rattus norvegicus 81 RGD1565222 ENSRNOG00000013317 ENSRNOT00000017857 3 1 1 83 15 33236152 33240019 CGATGCTAAACCCAATGGC 60 33236087 33236105 GTTTGGCATAAGCAGGGAC 59 NA Rattus norvegicus 81 C8b ENSRNOG00000007639 ENSRNOT00000010100 1 1 1 80 5 124322934 124324978 TGGAGCGAGGAGATTACAC 59 124325016 124325040 CTTTATAGACGTTACCACCAATCTG 60 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000085699,ENSRNOT00000088679 2 3 5 60 9 81666425 81666444 TTTGGACAAGTGCTGTACCT 60 81666467 81666485 AGGTTGTGGTAAGATGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000086216 3 1 12 60 20 3361365 3361387 ATCATAACATCCCTCTACAGCTC 60 3361404 3361425 TTTCCTGTCAGTATCGACTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ac ENSRNOG00000058437 ENSRNOT00000089436 3 1 1 175 17 44758672 44758690 GAGGGACAACAAGAAGACG 58 44758829 44758847 TTCCCTTGGCCTTATGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sft2d1 ENSRNOG00000024140 ENSRNOT00000049831 3 1 1 80 1 53003986 53005080 TTATTATGCTGTTGTGCCTGG 59 53002367 53002385 TGCAGAAGAGTAAGGCCAG 59 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734,ENSRNOT00000073268 3 2 2 80 4 123471682 123472928 GACTCCAGTTATATGTGGTGTC 58 123471623 123471643 CTCCACATATGCAGAAAGGTG 59 NA Rattus norvegicus 81 Rgs10 ENSRNOG00000042592 ENSRNOT00000027375 2 1 1 80 1 199794541 199807649 GGACAAGAAGCAGATGCAG 59 199794479 199794498 ACATTGACTTGTGAAGAGGC 59 NA Rattus norvegicus 81 Zfp503 ENSRNOG00000014237 ENSRNOT00000019644 1 1 1 97 15 2375291 2375309 ACACCCAGAGTATCTGCAG 59 2376058 2376076 AACATGTTTGAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Plxdc2 ENSRNOG00000000142 ENSRNOT00000000155 1 1 1 80 17 83539492 83539513 CGTGTAGAACTACAGATGTCCA 60 83539551 83539822 ATTGAATTGGAGACATGTTGGG 59 NA Rattus norvegicus 81 Pigo ENSRNOG00000009930 ENSRNOT00000013213 2 1 1 80 5 58467688 58467863 ACCTCTATCCTACCATGGAC 58 58467627 58467647 GCTTATGACCACAATGATCCA 59 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 3 2 2 80 1 198411990 198412331 ACTATACTTCCAGGCCTGC 59 198412372 198412393 AGAAATTGAACAGGTACAGGAG 58 NA Rattus norvegicus 81 Ublcp1 ENSRNOG00000004477 ENSRNOT00000006063 1 1 1 80 10 30115184 30115202 GCTTGGAGCTCTCAAACTG 59 30114773 30115144 CATAAGACATCTTCCAAGCTCTC 59 NA Rattus norvegicus 81 Rnmt ENSRNOG00000016698 ENSRNOT00000022410 2 1 1 81 18 64102782 64102801 GCCGAGTACATGAAGAACAG 59 64103641 64104765 AGTAAATGCTTGTAGCTTCCC 58 NA Rattus norvegicus 81 Olr1096 ENSRNOG00000014386 ENSRNOT00000019271 2 1 1 65 4 1842184 1842204 CCATACCCAAGATGGTATCAG 58 1842357 1842375 CTGCACAACCTTCAAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Hbb ENSRNOG00000058105 ENSRNOT00000090422 1 1 1 138 1 168971520 168972221 GAGAACTTCAGGCTCCTGG 60 168971400 168971418 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 1 1 1 72 6 126623040 126623058 AACTGAGTGACTCTTGCAC 58 126623094 126623501 ATTCTCCATGCTCTGTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Gfy ENSRNOG00000047401 ENSRNOT00000073918 2 1 1 98 1 101174129 101174421 AAAGAGACCGGGATGACTC 59 101174049 101174068 GAAGATGCCAATCAGCATCC 60 NA Rattus norvegicus 81 Kbtbd3 ENSRNOG00000022252 ENSRNOT00000034503 2 1 1 166 8 1459619 1459638 TTGCATCAGAAGATCATGGA 57 1459764 1472225 GTTTACTTCAAACATAGCCCTG 58 NA Rattus norvegicus 81 Snrpb2 ENSRNOG00000004967 ENSRNOT00000006900 2 1 1 81 3 137144207 137144225 AAACAAGAAGCCTGGTCAG 58 137145249 137146701 GTAATCAGGGACCTGAGGA 58 NA Rattus norvegicus 81 Fam26d ENSRNOG00000000580 ENSRNOT00000000708 2 1 1 80 20 27575913 27577696 GTATCAGTCACAGATGCTGG 58 27575852 27575872 CATCTCGCCAGACATTTAGAG 59 NA Rattus norvegicus 81 Rn60_X_0733.3 ENSRNOG00000051047 ENSRNOT00000076926 3 1 1 60 X 72456700 72456719 CAGAGGTTGATCTTTGCTGG 59 72456659 72456680 TGTTGTAGTCAGACAAAGTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam3c ENSRNOG00000060349 ENSRNOT00000090583 3 1 1 80 4 49414490 49422720 AGGAAGTCTATTTGCCCGA 58 49413501 49413522 TTTGAGATCCCACATTTGTACC 59 NA Rattus norvegicus 81 Brsk2 ENSRNOG00000020021 ENSRNOT00000027134 1 1 1 80 1 214930166 214930497 CCACTCCATATGCCATAGAG 57 214930540 214930558 CCAAAGTCTGCAATACGGA 58 NA Rattus norvegicus 81 LOC100361180 ENSRNOG00000048927 ENSRNOT00000013868 1 1 1 66 15 64190753 64190771 CAACCTCCAGGTCACTCAG 60 64190606 64190723 TTAAACAGCTCCACGTGGT 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364629 ENSRNOG00000025713 ENSRNOT00000036335 3 1 1 60 3 21313659 21313679 TTCTGTGATCTTCTCCCACTC 59 21313701 21313719 TGAGCTGAAAGGTATGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763,ENSRNOT00000076921 1 2 2 74 13 82595876 82595894 AGCAGAAGTCTGCAGTACC 59 82593140 82593158 GTACAGGCAACTGGATCCA 59 NA DesignNoJunction Rattus norvegicus 81 Gabrg3 ENSRNOG00000014862 ENSRNOT00000019971 1 1 1 80 1 112253571 112435014 CTTCTCTAGCTATGGCTACCC 59 112253511 112253530 GATTTCTGATCAGCTGCCTC 59 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000088484 2 1 2 200 18 79773962 79813617 AATTAAAGGTGCTTGCTGCA 59 79813780 79813798 CTCTCCTCAGCTCCATCTC 59 NA InUTR Rattus norvegicus 81 Fbxo44 ENSRNOG00000009298 ENSRNOT00000067059 3 1 1 80 5 164970466 164970489 GACTGGAAGATCTTCTATTTCCTG 59 164968347 164970427 GAACTCAAAGCCCTCTTCG 59 NA Rattus norvegicus 81 Sec61g-ps1 ENSRNOG00000049451 ENSRNOT00000072285 2 1 1 82 5 56771355 56771374 TGAAACTGATCCACATCCCT 59 56769524 56769542 CATCAGATCCGAGGGAACC 60 NA DesignNoJunction Rattus norvegicus 81 Myo3a ENSRNOG00000018478 ENSRNOT00000025053 1 1 1 80 17 89157320 89166905 AGAGTAATGAGAGGTGTTGGA 58 89166945 89166965 TGTAATCATAAGGGTTGGCTG 58 NA Rattus norvegicus 81 Olr515 ENSRNOG00000032722 ENSRNOT00000050404 1 1 1 60 3 73989566 73989585 CTACTCTTGTACTTGGTGGG 57 73989607 73989626 AGGAGACCAGAACAATCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.1 ENSRNOG00000050053 ENSRNOT00000071627 3 1 1 105 15 31948068 31948204 CTCCTCATCCTCACAAGGG 59 31948273 31948291 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Ap3d1 ENSRNOG00000018977 ENSRNOT00000025878 2 1 1 80 7 11867037 11867055 AAGAAGAGCAAGAAGCCCA 59 11867099 11868276 GTCCTCACCCTTCTTGTCC 60 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 2 3 3 122 12 22753562 22753581 AATGACGACATCCGTAGAGG 59 22751134 22751550 TTCATATTCCTTGAGCCGGT 59 NA Rattus norvegicus 81 Mrgprb5 ENSRNOG00000022703 ENSRNOT00000029958 1 1 1 60 1 103545684 103545706 CCAATCCCATCATTTACTTCCTC 59 103545725 103545744 CTCTGCCTTTGTAACCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110b ENSRNOG00000009114 ENSRNOT00000012066 2 1 1 60 5 18902126 18902146 GGTTCTTCAACTACTGTGGAC 59 18902168 18902186 AAGTTCTCCATGCCAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spaca4 ENSRNOG00000021037 ENSRNOT00000028558 2 1 1 60 1 101708036 101708054 GTGTTGGTTCTTTGCCCTG 60 101707994 101708012 CAGTCAGCTCACAGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt2 ENSRNOG00000013110 ENSRNOT00000017712 3 1 1 88 5 57845847 57857013 TGCTGCGGATAGATCATGG 60 57857063 57857083 TCAATTGTTGTGTTGTCCACC 60 NA InUTR Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 2 2 3 86 10 105085653 105085672 ACCTGGGACCTATTACTTCC 58 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000087084 2 2 3 98 10 105094844 105094862 TCTGGACTGTCCAGAAAGC 59 105094930 105094951 TCAGACTGGCCTTAAACTCC 60 NA InUTR Rattus norvegicus 81 Fbxl3 ENSRNOG00000059334 ENSRNOT00000089876 3 1 1 80 15 93656809 93660048 ATGGATCTACCAAAGTCTCAC 57 93656749 93656769 TATCTTAAGTGAGGACAGGGA 57 NA Rattus norvegicus 81 Olr839 ENSRNOG00000049174 ENSRNOT00000047909 3 1 1 60 5 59313014 59313034 TCTTCATACTCTCCACCATCC 59 59312974 59312992 GAGAAGGCCTTCTTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sephs2 ENSRNOG00000048397 ENSRNOT00000074114 1 1 1 132 1 198721088 198721106 AGTTTCTCCAACTACCGGC 60 198720971 198720989 GTCCCTCCAGGAGTTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Hrh1 ENSRNOG00000007420 ENSRNOT00000009775 1 1 1 60 4 146456492 146456510 GGACCACAGACTCAGACAC 60 146456534 146456552 CCGCTTCTCGATTTGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 2 2 2 80 9 74234373 74235274 TCACCAATTTCCAGGTGAC 58 74235318 74235336 AGTGGAACAGACTCTTGGA 58 NA Rattus norvegicus 81 Fuom ENSRNOG00000018476 ENSRNOT00000024976 2 1 1 87 1 212566584 212566602 CCCAGTGACAAGGAGAAGG 60 212565353 212566535 TCAGGGCTTTCTTACAGTCAG 60 NA Rattus norvegicus 81 Tex101 ENSRNOG00000020057 ENSRNOT00000027202 2 1 1 80 1 81531771 81532219 TAAAGCAGAAGGAACCAAGAC 58 81531711 81531730 TGAACGAATGTCATCGTCTC 58 NA Rattus norvegicus 81 Magec2 ENSRNOG00000026265 ENSRNOT00000033723 2 1 1 144 X 145359799 145360511 TGGAGTTCATCAGGATCCT 57 145360755 145360773 TTACACCTTCTTCCAGGCT 58 NA InUTR Rattus norvegicus 81 RGD1559493 ENSRNOG00000030914 ENSRNOT00000052130 2 1 1 80 5 126219710 126219729 AAGAAACCACAGAGCAAACG 59 126218059 126219668 GCCGGGATAATAATTCCCGA 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 1 3 3 80 10 109712028 109712145 CTGTCATGTCTGCCAAAGG 59 109712188 109712207 GCACTGGTCACTATAGAGCT 59 NA Rattus norvegicus 81 Pglyrp3 ENSRNOG00000046881 ENSRNOT00000016364 2 1 1 80 2 192260366 192262619 GTGACATTGCATATCACTTCCT 59 192262658 192262678 TGTGAGAGCCTTCAATAGTCC 60 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 3 2 2 105 15 29208649 29208774 TTCTACTCGGAAGGACTCG 58 29208842 29208861 CTTGTGGCTGAATAAGTGCA 59 NA Rattus norvegicus 81 RGD1305587 ENSRNOG00000000551 ENSRNOT00000000662 1 1 1 123 20 31735990 31736008 AACAGAGGAATAGCAGCCC 60 31735089 31735107 CTGAAAGGAGATTGGGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 1 2 2 80 1 90512427 90517106 TGACTCCAGAATAAGCCGT 58 90512365 90512385 CGGTCGATGAAATAATGTTGC 58 NA Rattus norvegicus 81 LOC100365061 ENSRNOG00000048578 ENSRNOT00000060322 2 1 1 79 15 32386838 32386856 TGTTCCTGTTCTTCTGGCT 59 32387058 32387076 GACACTCAGGTGAGATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Mmp13 ENSRNOG00000008478 ENSRNOT00000011507 1 1 1 81 8 5524483 5524501 TTTCCTCCTGGACCAAACC 60 5524546 5526515 AGTTGTAGCCTTTGGAGCT 59 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844,ENSRNOT00000079539 3 2 2 80 19 43839960 43840296 CGCCATTATAGGAAGAGTGC 59 43839899 43839918 TGTAATGATGCCCAGAGTCC 60 NA Rattus norvegicus 81 Slc14a2 ENSRNOG00000056021 ENSRNOT00000078519 1 1 1 80 18 74520071 74520764 GGGACTTAAAGACAAATCTCCAG 59 74520013 74520034 TTGTTCACAAACATCACCTGAG 60 NA Rattus norvegicus 81 RGD1563293 ENSRNOG00000038076 ENSRNOT00000057933 3 1 1 96 13 93973784 93973803 CCCATCTGAACACAGAGGAG 60 93973861 93974198 CTTGAACACCTTGAGGAAGC 59 NA Rattus norvegicus 81 Ap1s1 ENSRNOG00000001415 ENSRNOT00000001918 3 1 1 93 12 22668218 22669234 TGTCTATAAGAGATATGCCAGTCTC 60 22669285 22669303 TACGTATCGGTGGATCAGC 59 NA Rattus norvegicus 81 AABR07017624.2 ENSRNOG00000049773 ENSRNOT00000072745 2 1 1 104 15 29360048 29360161 TTCTCCTAAGAGTTGCCCA 58 29359962 29359980 CAGGTGTGGAATACTTGCA 58 NA Rattus norvegicus 81 Nr2c2 ENSRNOG00000010536 ENSRNOT00000014353 3 1 1 80 4 124025309 124026254 TCTTTAGTCCCGATCATCCA 58 124026295 124026315 CTTGTAATTCCATCTGTGCCT 58 NA Rattus norvegicus 81 Efs ENSRNOG00000042029 ENSRNOT00000022514 1 1 1 80 15 33583626 33583644 TCCGACTCCATCTACAAGG 58 33583472 33583583 CACATCATAGACCTCTCCCA 58 NA Rattus norvegicus 81 Olr867 ENSRNOG00000057338 ENSRNOT00000089549 1 1 1 60 5 137874577 137874596 GTCTTCCTTCTCCTCTACCT 58 137874536 137874554 AGACCAGCACGATGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss30 ENSRNOG00000033266 ENSRNOT00000034340 1 1 1 88 10 13350779 13350928 TATTGCATTCAGGTGCTGG 58 13350709 13350727 TTTCTCTGTCCTCAGGCTG 59 NA Rattus norvegicus 81 Fubp3 ENSRNOG00000009139 ENSRNOT00000021871 2 1 1 80 3 10234336 10235489 GGTAGTATAGAGGTGTCTGTGC 60 10234277 10234301 CTGGATCTTCTTAATCATTTCTCCG 60 NA Rattus norvegicus 81 Creb3l3 ENSRNOG00000032202 ENSRNOT00000044484 2 1 1 80 7 11494410 11494430 CAGAGGATGAGAAGAAGTTGC 59 11494472 11495257 CCCGTTCCTCATACTTGGT 59 NA Rattus norvegicus 81 RT1-N3 ENSRNOG00000000795 ENSRNOT00000001035 1 1 1 80 20 3169592 3169610 CACTGTCTCTGCAATTGCC 60 3169654 3170161 CTTCCTCTTTCACCTGCCT 59 NA Rattus norvegicus 81 Mospd4 ENSRNOG00000003575 ENSRNOT00000004747 2 1 1 60 18 40452027 40452045 GTATTTGAAGCGCCGACAG 60 40451985 40452005 CTACCTTTCTGAGTCTCAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 3 2 2 80 13 103185837 103185930 AGTCAGAAGAGGAGTTCCA 57 103185974 103185992 GTAGAACCGCACATAACCA 58 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086,ENSRNOT00000042606 2 2 2 81 15 61910251 61913777 AAGTCATTTATGGAGTCTGGTG 58 61913817 61913837 GAGGGTTGATTTCAACTTTCC 58 NA Rattus norvegicus 81 LOC688708 ENSRNOG00000022305 ENSRNOT00000044108 3 1 1 80 10 585823 585843 CTCAGGATCTTTCTGTCTCAC 58 583508 585781 ATTCATCCCTCCACCATCC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 1 2 2 80 1 100229673 100229691 GATACCATGAGCTGTTGCG 59 100229535 100229629 GGGTCAAGAAGTCTGTCCA 59 NA Rattus norvegicus 81 Chic2 ENSRNOG00000002267 ENSRNOT00000003085 3 1 1 86 14 35683815 35697102 CGTCACCGTATTTGGACTG 59 35697283 35697302 GCTTTAAATTCTTCAGGCGC 59 NA Rattus norvegicus 81 Ccdc71 ENSRNOG00000048718 ENSRNOT00000074493 3 1 1 60 8 117249274 117249293 TTGAAGCACTAGTCCCACTC 60 117249316 117249334 AATGACTGTGCCCTATGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb6 ENSRNOG00000039455 ENSRNOT00000060466 3 1 1 60 18 30891657 30891675 AGTGACAGCCACTGATGAG 59 30891699 30891717 GCTCCGAAAGTAGTACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401,ENSRNOT00000088212 3 2 2 96 11 89570212 89570230 GTGATGGTACGGTTAGCTG 58 89570289 89574239 TCATAGTTTGTCCTTGGTGG 58 NA Rattus norvegicus 81 Fhdc1 ENSRNOG00000024594 ENSRNOT00000066477 3 1 1 80 2 183464528 183464547 ACATTTAACGGCGATGTGTC 59 183464377 183464487 AAGTGAATAGTTTGGCACCTG 59 NA Rattus norvegicus 81 Sult4a1 ENSRNOG00000046975 ENSRNOT00000075099 3 1 1 82 7 124982414 124982432 GGGAAGATGGAGGACATCG 60 124972673 124982368 AAGCTCGTACCTGACTTGG 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000046466 ENSRNOT00000071822 1 1 1 90 15 29993490 29993602 TTCTTCTGAGAGTTGCCCA 59 29993418 29993436 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Ccdc88c ENSRNOG00000004482 ENSRNOT00000005908 1 1 1 80 6 125021089 125021108 GTCAACAATGACGTCAACCT 59 124981295 125021048 GAGAACTTCCTGGTAGTAGGT 58 NA Rattus norvegicus 81 Mrpl4 ENSRNOG00000020659 ENSRNOT00000049706 1 1 1 80 8 22025634 22025652 CATGTTGCCCATGAAAGTG 58 22025694 22025805 ACAATGTGTAGATCATCCTGC 58 NA Rattus norvegicus 81 Mrpl4 ENSRNOG00000020659 ENSRNOT00000049706 2 1 1 80 8 22025883 22025983 TGCTCCTTGTAGACTTAACAC 58 22026024 22026043 TCAGGTTGAAACTGTTGAGC 59 NA Rattus norvegicus 81 Mrpl4 ENSRNOG00000020659 ENSRNOT00000049706 3 1 1 80 8 22025635 22025653 ATGTTGCCCATGAAAGTGC 59 22025694 22025806 CACAATGTGTAGATCATCCTGC 60 NA Rattus norvegicus 81 Prr16 ENSRNOG00000019744 ENSRNOT00000026724 1 1 1 60 18 46149335 46149353 GGCTATTGTCCTGACTGTG 58 46149377 46149395 TGTGTAAATGGACCTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dstyk ENSRNOG00000021298 ENSRNOT00000004810 3 1 1 80 13 49211123 49211142 AGAAGACAGTGAGGACACTG 59 49211184 49224928 ATGTCCACTTCCTGTAGGAG 59 NA Rattus norvegicus 81 AABR07051563.1 ENSRNOG00000048070 ENSRNOT00000043097 3 1 1 85 3 17107902 17108123 GGTATCTGGTACCTGTGGG 59 17108171 17108190 AGCTCATAGTGACCTTCTCC 59 NA Rattus norvegicus 81 LOC100361009 ENSRNOG00000048167 ENSRNOT00000046231 2 1 1 87 3 16610153 16709061 GGTTGTCTGGCTTTACTGG 59 16883741 16883759 ATGGATTTGGGAGACTGGG 59 NA Rattus norvegicus 81 LOC100361009 ENSRNOG00000048167 ENSRNOT00000046231 3 1 1 87 3 16610154 16709063 GTTGTCTGGCTTTACTGGAG 59 16883742 16883760 CATGGATTTGGGAGACTGG 58 NA Rattus norvegicus 81 Lingo3 ENSRNOG00000032569 ENSRNOT00000046059 3 1 1 60 7 11746549 11746567 TCCTCTTCTGCTTTCTGCT 59 11746590 11746609 TTATTCTTGTGCTGTCCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkrn3 ENSRNOG00000010172 ENSRNOT00000013551 2 1 1 102 1 123064617 123064635 AGTCTACAGCTCCCATGGA 60 123064340 123064358 GAAGCCTCAAACTGAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07050391.2 ENSRNOG00000058695 ENSRNOT00000071103 3 1 1 60 5 163612915 163612933 GGGTTCAGATGAGGACAGG 60 163612955 163612975 ATTAACTCATCCTTCTGGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000001036 3 1 2 83 20 3176221 3176430 CCCAGACTAGCTCACACTC 59 3176477 3176495 CAACGACAATGAACCTGGG 59 NA Rattus norvegicus 81 LOC100909998 ENSRNOG00000015188 ENSRNOT00000020367 2 1 1 60 3 120157646 120157665 ATGGATCTGAGGAGAAAGCA 59 120157135 120157629 TCAGAGTTAGTTTCCAAGTCTAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Bloc1s6 ENSRNOG00000037160 ENSRNOT00000056083 2 1 1 146 3 114876142 114878161 TCAATGCTTTGTTCACGGA 58 114878649 114878667 TCTCCAGCTCCTCTTTCTG 58 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 1 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696097 238696117 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 1 2 2 80 19 44064414 44065810 CAAGTTCACAAGTTAAGGTAGC 58 44064355 44064376 TCTCTAGTTCATCTGCTTTCAC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078316 3 1 9 60 9 81545334 81545353 TAACTGCTCTTTCAGTGGAC 58 81545375 81545394 GGGTCAGAAGAAAGCATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srsf5 ENSRNOG00000005513 ENSRNOT00000007583 2 1 1 80 6 104612100 104612120 AAGATTCTTCAAGGGTTACGG 58 104612161 104612577 CTTGGGTCCTCAAATTCCAC 59 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549,ENSRNOT00000080834 2 2 2 80 11 73181418 73181438 ATGTGAACCAAAGAGATGTCC 58 73181479 73182684 ATAAACATACCTGCCCTGTG 58 NA Rattus norvegicus 81 Rnf146 ENSRNOG00000011588 ENSRNOT00000015421 1 1 1 80 1 30866702 30872096 TCTGTGATGGAAATGATGGC 58 30872138 30872157 CTCACTCGCCTTCTTATTGG 59 NA InUTR Rattus norvegicus 81 Por ENSRNOG00000001442 ENSRNOT00000001961 3 1 1 84 12 24000235 24000964 AACAATCTCGATGAGGAGTC 57 24000170 24000188 TGTCCAGGTAGTAGGTGAG 57 NA Rattus norvegicus 81 Olr1230 ENSRNOG00000049352 ENSRNOT00000072547 3 1 1 60 4 1418267 1418287 GTGGGTCTCACATCATAACTG 59 1418308 1418327 TTGACATAAGCAAGCAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 3 2 2 86 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404203 108417990 TTGATCATTCCTCCCTGCTG 60 NA Rattus norvegicus 81 Prrt2 ENSRNOG00000029366 ENSRNOT00000049044 2 1 1 87 1 198452717 198452736 CAAGCTCTTAAGCATCGTGG 59 198452499 198452667 CCCTCACTTATACACGCCT 59 NA InUTR Rattus norvegicus 81 Scube1 ENSRNOG00000010617 ENSRNOT00000017727 3 1 1 80 7 124530680 124534537 ATGCAAAGACATCAACGAGTG 60 124530620 124530638 CATTCAAAGCTGCCCACAG 60 NA Rattus norvegicus 81 Dpyd ENSRNOG00000017105 ENSRNOT00000086125 3 1 1 80 2 222537416 222537435 CACAGGTGGAATTGACTCAG 59 222537478 222576264 ATAGCACTGCATACCTGGA 58 NA Rattus norvegicus 81 Tln1 ENSRNOG00000016630 ENSRNOT00000022400 3 1 1 80 5 59041909 59041927 CAAGCGCCAGTTTGTACAG 60 59041647 59041866 CCATCTAGTGCCTTGATGGT 60 NA Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 1 1 1 60 13 49935402 49935423 TTTCTGGAGAAAGATACACCCA 59 49935439 49937886 GTAACTTCTTCAAGGAAGGTTACC 60 NA DesignNoJunction Rattus norvegicus 81 Ttc38 ENSRNOG00000015916 ENSRNOT00000021582 1 1 1 80 7 126725735 126728675 TCTACGACAGCCATATCCTC 59 126728717 126728736 GGTAGAGCATGGAACAACTG 59 NA Rattus norvegicus 81 Psg29 ENSRNOG00000029485 ENSRNOT00000043333 1 1 1 80 1 79237299 79238271 TATGTAACCAAGCCTGTGAC 58 79237238 79237256 CGTGAAGGTCACAGATCTG 58 NA Rattus norvegicus 81 Spata18 ENSRNOG00000002120 ENSRNOT00000002899 1 1 1 80 14 37089353 37091395 CAAAGCAGTGTCAATGATGTG 59 37089293 37089311 GAGGCAGAAGTCAACTTCC 58 NA Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 3 2 2 80 3 71757928 71757949 GCACATTCTCATGCACTATCAG 60 71751003 71757168 CTCAGAATTGCTTGAACCTCTC 59 NA Rattus norvegicus 81 LOC687097 ENSRNOG00000043313 ENSRNOT00000066512 2 1 1 60 1 230297912 230297934 GACTCCTTACAGGAAGAAATGTC 59 230297874 230297895 AAGAAGAACATCTGAACAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dok5 ENSRNOG00000013196 ENSRNOT00000017654 3 1 1 80 3 168438257 168438278 GCACCAAGAAACATGCTATAGG 60 168438317 168438457 CTGCCTCAAGATCTGATTCAC 59 NA Rattus norvegicus 81 Acy3 ENSRNOG00000017901 ENSRNOT00000024112 1 1 1 80 1 219235122 219235499 TACCTACAGCTGCAGAACC 59 219235540 219235561 ATCCATACTGTAGGACTCTGTC 59 NA Rattus norvegicus 81 Olr197 ENSRNOG00000017379 ENSRNOT00000023335 1 1 1 60 1 170091936 170091957 ATGTTTGTCCTGTCACTAACTG 59 170091897 170091917 TGTGTTCTTTCCAGATGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 1 2 2 133 5 169296482 169300942 GGAGGAAGGAAGAAGAGGA 58 169294257 169294275 GATTTCCTCCAGCTTCTGC 59 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871,ENSRNOT00000051512,ENSRNOT00000044972 3 3 3 80 13 49381480 49381499 GTGATCCTTTACAACCGGAC 59 49381122 49381438 CCCATTCTTAAACCATCGGA 58 NA Rattus norvegicus 81 Ranbp6 ENSRNOG00000053859 ENSRNOT00000078998 1 1 1 60 1 247985330 247985351 GACTACATTCCTCTTAGATGCC 58 247985291 247985312 CATTTGTCTCACCTCATAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 2 2 2 80 5 124143376 124143395 TTGGGATCGATGAAGTGTCC 60 124143438 124148662 CAGCAACAACACCCTTGAG 59 NA Rattus norvegicus 81 RGD1562218 ENSRNOG00000019169 ENSRNOT00000025948 1 1 1 101 19 57603522 57603969 TCAGGAGGACAGGAGATCC 60 57603439 57603458 GGGCTTAGAATCAATGTCCC 58 NA DesignRelaxed Rattus norvegicus 81 LOC687104 ENSRNOG00000050455 ENSRNOT00000008475 3 1 1 60 3 78271289 78271311 GACACTTATGTTATTGGCCTCAC 60 78271251 78271271 AGATGATGACACAAATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir30b ENSRNOG00000053467 ENSRNOT00000079419 2 1 1 60 7 109282713 109282737 GTTCATGTAAACATCCTACACTCAG 60 109282677 109282696 GTAAACATCACATCCCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam167b ENSRNOG00000049425 ENSRNOT00000074172 3 1 1 125 5 147783888 147783906 CATGGATTCAGCGCTTGAG 59 147783025 147783044 CAGACTTGGTCCACTTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Aard ENSRNOG00000004708 ENSRNOT00000006257 3 1 1 61 7 91592474 91592492 AGAAGAGACAGGACCAGGA 59 91592517 91592535 ATTCATCTCCTCGTCTTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr10 ENSRNOG00000046729 ENSRNOT00000047255 1 1 1 60 X 95345161 95345179 TTCTTGTTGGCTGTGATGG 58 95345203 95345221 AATATCGCAGAGGGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crygs ENSRNOG00000038355 ENSRNOT00000058402 1 1 1 80 11 81801184 81801798 AGAGCTGTTCATCTGTCTAGTG 60 81801839 81801857 TTCGTACATCTGGCCACTG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026252 3 1 4 100 1 81126012 81126030 TTTCGGAACCTGCTCTCAG 60 81124239 81124918 TTGTTCATTCCTGAACCTTGC 60 NA Rattus norvegicus 81 Micb ENSRNOG00000057645 ENSRNOT00000083211 2 1 1 89 1 79769685 79769703 CTGAGAATCTGCCGAAGGA 59 79769756 79769977 GAGTGTATGGGCCTTTGTC 58 NA Rattus norvegicus 81 Spam1 ENSRNOG00000007231 ENSRNOT00000009537 3 1 1 88 4 52200548 52200567 ATGAATCGAATCCAGTTCCA 57 52200615 52201462 CACAAGATCATCCTCTAGAAGG 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021114,ENSRNOT00000021229,ENSRNOT00000021347,ENSRNOT00000021226 2 5 5 80 1 259379106 259382229 TCACAGGATTTATGTAGCTACC 58 259379047 259379065 ATCTCCATCTCGGAGTTCC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421,ENSRNOT00000085708 3 2 2 80 6 23272446 23272464 TCGCAGCACATAACTTGTG 59 23270465 23272405 CTTTGTCATTCCTAAATGCAGG 58 NA Rattus norvegicus 81 Opn1sw ENSRNOG00000006874 ENSRNOT00000009278 1 1 1 80 4 56656639 56656660 CATGGATACTTCCTCTTTGGTC 59 56656409 56656599 CCATCCTGTCACTAGACCTG 59 NA Rattus norvegicus 81 Olr324 ENSRNOG00000021070 ENSRNOT00000028604 2 1 1 60 1 228537254 228537273 GACAGAGCCATCTCAATCAC 59 228537213 228537232 TGTAGATCATTGGGTTCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scrib ENSRNOG00000032574 ENSRNOT00000045280 1 1 1 80 7 117121862 117122411 GGAAGACTATAATGAGCCCAC 58 117121802 117121820 TGTCCCTCTTCACCTTCAC 59 NA Rattus norvegicus 81 AC139642.2 ENSRNOG00000021723 ENSRNOT00000032477 1 1 1 62 4 118342123 118342141 GAAACAGCCCAAGAAGCAG 60 118342079 118342097 TGTTTCTGCTTGAAAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1576 ENSRNOG00000009141 ENSRNOT00000012103 3 1 1 60 13 91482158 91482176 AGAAGAAAGCCTTTGCCAC 59 91482199 91482218 CAGCCGTAGTGAACAATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563104 ENSRNOG00000031294 ENSRNOT00000043728 3 1 1 60 X 96531095 96531116 ACGAATAAGGATCAAGAATCCC 58 96531135 96531155 GCACCTCTTTAACAGATTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 3 2 2 80 3 45111153 45111171 AAGGCTGCCTTTGAAAGAC 59 45111014 45111110 ACCTAGTAACTCCACACTCC 58 NA Rattus norvegicus 81 Otx1 ENSRNOG00000059469 ENSRNOT00000090664 1 1 1 80 14 106863805 106863824 CTACCCAGACATCTTCATGC 58 106862394 106863763 TTCTTGAACCAAACCTGGAC 58 NA Rattus norvegicus 81 Apobec3b ENSRNOG00000016852 ENSRNOT00000037134 3 1 1 80 7 121125841 121125860 AAGTCCTATCTGTGCTACCA 58 121125900 121126740 TTCACCTTTCTTGTATAGCAGG 58 NA Rattus norvegicus 81 Olr1596 ENSRNOG00000057400 ENSRNOT00000089352 3 1 1 60 13 92249846 92249866 CCACTGCTCTTTATCTATGCC 59 92249887 92249906 GGACCACTGTGATGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 3 2 2 80 9 15114043 15114064 CTTTATGGACATGGAGAATGCA 59 15114102 15114790 GTTGAGGTGTTTGATAAACTGG 58 NA Rattus norvegicus 81 Atp10d ENSRNOG00000002312 ENSRNOT00000003146 2 1 1 80 14 38533056 38533185 TGTTACAGGTCTTGATTCCCA 59 38532996 38533019 CACTCTGGATGAAATAGATCTGTC 59 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 3 2 2 83 3 120026855 120031380 CACTTTGAGGACTTTGTGGT 58 120026791 120026809 GTAGAGATTGAAGGCCCAC 58 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911,ENSRNOT00000074245 3 2 2 97 7 118714466 118714484 TACGAGGAGCCTAGAGGAC 60 118714544 118715074 CATCTTCCTCTTCCCTGGAC 60 NA Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000090065,ENSRNOT00000041527 2 2 2 77 1 72785759 72785777 GTTCTGCTGTTGGAGATGC 59 72786644 72786662 AGTGGGCAACAGAGAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000090065,ENSRNOT00000041527 3 2 2 79 1 72785755 72785773 ACATGTTCTGCTGTTGGAG 58 72786642 72786660 TGGGCAACAGAGAAGACTG 60 NA DesignNoJunction Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 1 2 3 89 X 70565952 70566268 CTTCAATGAATTCCTGTTCCG 58 70566319 70566337 GCATATGTGACCAGGAGAG 57 NA Rattus norvegicus 81 Ehd1 ENSRNOG00000043503 ENSRNOT00000054830 2 1 1 80 1 221664753 221665171 AGATGCAGGAACTTCTGCA 59 221665214 221665233 TATCATCCACCGTATCCAGC 59 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 2 2 2 80 1 64126171 64126192 ATGATGTATACAGTAGCCCTGG 59 64126230 64126355 TTGTACTTCCGTCTCTATCTGG 59 NA Rattus norvegicus 81 Rtn2 ENSRNOG00000016603 ENSRNOT00000022528 2 1 1 80 1 80206110 80206819 TTGTCATCTTGGGAGTGGT 59 80207615 80207634 CCACATACTGGTCAATCTGG 58 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 1 2 2 80 7 34636063 34636082 CTGCACAATAAGAGTGAGCC 59 34636123 34641549 TTCACATTTACCTGAGTGTCG 58 NA Rattus norvegicus 81 Adh6a ENSRNOG00000012281 ENSRNOT00000016556 1 1 1 80 2 243593182 243593201 CCTCATTATCCCACAGTGTC 58 243593241 243593393 GGAAGAACATCTTGTTTCTCAC 58 NA Rattus norvegicus 81 AABR07017870.1 ENSRNOG00000045525 ENSRNOT00000060310 1 1 1 80 15 32076334 32076572 TCCAATTAAATTGGGTGAGCAG 59 32076612 32076631 AAGCTATGGATCCCTCTGGA 60 NA Rattus norvegicus 81 Rpl13 ENSRNOG00000015335 ENSRNOT00000020635 3 1 1 117 19 55918332 55918350 CAAATCCACGGAGTCACTG 59 55918430 55918920 TTCTTCAGCAGAACTGTCTC 58 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 3 2 2 80 7 126122208 126123190 ACTGCAAAGATATTGACGAGTG 59 126123229 126123249 AGGATCCCAGAGTATTCTGAC 59 NA Rattus norvegicus 81 Slc2a8 ENSRNOG00000022274 ENSRNOT00000022327 2 1 1 83 3 12028174 12029204 TGGCACCGGTCTATATCTC 58 12028109 12028127 CAGTGACAACCATCAGCTG 59 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000077052,ENSRNOT00000087355 2 3 4 105 9 111208730 111208750 TTCCTATATGGACCTCCTCAG 58 111207018 111207037 TTACAATCTCCTTTGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000076441 3 2 4 99 9 111219326 111220645 TAGGACCACTTCGAAGCAG 59 111219245 111219263 CACTCATGGTGATCCTCCT 59 NA Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 1 1 1 68 7 144624137 144624880 AATGAATTCGCACAGTGGG 59 144624912 144624930 TACCGAGAGTAGATCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 LOC679960 ENSRNOG00000003062 ENSRNOT00000004086 3 1 1 60 X 72449071 72449091 CAAACAAGTTCTACATGCTGG 58 72449110 72449131 ATTCTTTCCCACTGTAACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsrp1 ENSRNOG00000022502 ENSRNOT00000030749 1 1 1 83 10 63128567 63130452 CTTTCGTGAAGCCAGAACTG 60 63130498 63130516 TGCTGTGGTCTGTTCTCTG 60 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 1 2 2 80 10 88481439 88484516 TCATCAGTGCCTTAGACGA 58 88484559 88484578 TTTCCCTGAGTATCTCCCTG 58 NA Rattus norvegicus 81 Btbd18 ENSRNOG00000043106 ENSRNOT00000066606 1 1 1 112 3 72063565 72063583 TTCTGCAGCTTCATCACCA 60 72067515 72067533 GAAGGGACTACAGGCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Mdm4 ENSRNOG00000009696 ENSRNOT00000012984 1 1 1 80 13 49796677 49798828 AGACAAGAAGATGGTTGAAGG 58 49796617 49796638 ACTTCCACATCAGTATCATCAC 58 NA Rattus norvegicus 81 Ermard ENSRNOG00000015230 ENSRNOT00000059845 2 1 1 80 1 56986235 56987910 TTTGGACATGCTGTGATGG 59 56987954 56987972 ATGCCACAAGACGTTTCTC 59 NA Rattus norvegicus 81 Ak4 ENSRNOG00000045738 ENSRNOT00000070967 1 1 1 80 5 120281495 120301655 TATTAGATGGATTCCCAAGGAC 57 120301693 120301714 TCAAACTGATTACTAGGTCCAC 58 NA Rattus norvegicus 81 Fkbp6 ENSRNOG00000001451 ENSRNOT00000001971 3 1 1 80 12 24367558 24367578 CTGAAAGATATCATCCGCGAG 59 24367616 24369217 CAGGTATCCAGAGTATTTCACCA 60 NA Rattus norvegicus 81 Efhd1 ENSRNOG00000015596 ENSRNOT00000021168 2 1 1 113 9 94387929 94387948 CTCATGATGGAGAAACTGGG 58 94388024 94395520 AATGAGCAGAAACTCCCGA 59 NA Rattus norvegicus 81 AABR07028886.3 ENSRNOG00000055012 ENSRNOT00000081249 3 1 1 80 17 89803030 89803052 CAGTGATACAGGAAAGCTAAGTC 59 89801733 89802993 TCATATGATTCCCGTAGAAGGA 58 NA Rattus norvegicus 81 Ntn5 ENSRNOG00000021016 ENSRNOT00000028524 1 1 1 80 1 101674644 101674662 GCCTGACATGCAATCACTG 60 101674704 101675044 TTGCTTCTGGAATTCGTTGAC 60 NA Rattus norvegicus 81 Tp73 ENSRNOG00000024707 ENSRNOT00000055398 3 1 1 80 5 171366768 171367237 GGGACTTCAATGAAGGACAG 58 171366707 171366726 CATCCACATATTGGGAGAGG 58 NA Rattus norvegicus 81 Fibin ENSRNOG00000004699 ENSRNOT00000006203 2 1 1 60 3 101546596 101546614 TCCTTGCTGAAGGAGACAC 59 101546554 101546572 CCAGCAGCTCGTATTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn2 ENSRNOG00000009033 ENSRNOT00000012190 2 1 1 80 13 49289474 49289492 AGAGATGAACGTGAGCTGG 60 49288560 49289431 GCTTTCCAGTAGCGAATCTC 59 NA Rattus norvegicus 81 Dnai1 ENSRNOG00000013734 ENSRNOT00000067657 3 1 1 80 5 57973935 57973953 GGAGTTCACTCGGATCCTG 60 57973995 57978783 TATGTGCGTTCTTTGAAGCTG 60 NA Rattus norvegicus 81 Rab5c ENSRNOG00000018568 ENSRNOT00000030344 1 1 1 80 10 88623553 88623572 ACAGTTTGCTGTTCATGGAG 59 88623058 88623511 GAAGCTTCTTAGCTATCGCC 59 NA Rattus norvegicus 81 RGD1564324 ENSRNOG00000042267 ENSRNOT00000067607 3 1 1 85 15 33822821 33823083 CGATCTCTGATTGGCTTTACC 59 33823130 33823148 ATGATCTGCTGTTTGCAGC 59 NA Rattus norvegicus 81 Olr1283 ENSRNOG00000057810 ENSRNOT00000083638 2 1 1 60 15 35814219 35814239 TTGCTGTCTTCTTTGGATCAC 59 35814260 35814279 ATGGAACTGACTGATGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rprd1b ENSRNOG00000012923 ENSRNOT00000017265 1 1 1 80 3 154526185 154526205 AGGAAGATGATGACTACCCTG 59 154526241 154527848 CTTTGATTAACTCCTCAGTCAAGAG 60 NA Rattus norvegicus 81 LOC100912008 ENSRNOG00000005247 ENSRNOT00000061242 1 1 1 80 3 4870895 4870914 TGATGCTGGCAGATTATCCT 59 4870532 4870852 ATGGTGACTCCCAAGTCAG 59 NA Rattus norvegicus 81 LOC100912097 ENSRNOG00000019594 ENSRNOT00000026503 1 1 1 60 1 171095960 171095978 CCTGCTGATCCTTTGTTCC 59 171096002 171096020 TGCTGATGGAATCTTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efhc2 ENSRNOG00000002986 ENSRNOT00000037360 2 1 1 80 X 5941733 5941752 GGCTACCTCTTTCTTCTGCT 60 5941792 5945397 GCTATATGGAAACCTGTCTGTG 59 NA Rattus norvegicus 81 Dnajc22 ENSRNOG00000053498 ENSRNOT00000087932 1 1 1 60 7 140784261 140784279 AGGATGAGAAACGTCAGCT 59 140786601 140786619 TCATTGGTGGCTCCTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Olr481 ENSRNOG00000031051 ENSRNOT00000040041 1 1 1 60 3 73484652 73484671 CAAAGGCAACCATTCATCAG 58 73484611 73484631 TTCAGGATCTTCTGTAAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1ql3 ENSRNOG00000017459 ENSRNOT00000023637 2 1 1 101 17 80320150 80320168 TTCTTCACCTACCACGTCC 59 80314339 80314357 ATCTTGGGCAATTGCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr848 ENSRNOG00000049790 ENSRNOT00000039903 1 1 1 60 5 68619369 68619388 CACACCCATGTACTTCTTCC 58 68619408 68619429 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rexo1 ENSRNOG00000017916 ENSRNOT00000024080 1 1 1 80 7 12036963 12036981 CAGGGATGGCATCTAAGAC 57 12037023 12037332 GCTTCTTTAGACTCTGGAGTG 58 NA Rattus norvegicus 81 Olr60 ENSRNOG00000050496 ENSRNOT00000049401 2 1 1 60 1 167892429 167892451 TCTATGGACTCTATGTGGTTCTG 59 167892391 167892411 GACATGACAATAAGCGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 1 3 3 80 10 88428100 88428119 GAGGTCACCATCTTTGTTCG 59 88419947 88428058 AGTGGTCTTCCCAACTTCTC 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880,ENSRNOT00000054753 1 2 2 80 1 253251951 253251970 AGATTGTGCTGAGCTAAAGG 58 253252013 253253003 CGCATTACAGATACCTCCC 58 NA Rattus norvegicus 81 Gnl3 ENSRNOG00000028461 ENSRNOT00000033677 3 1 1 80 16 7097924 7097944 GAGATCTCAGATGTGACTCCT 59 7097770 7097884 TCTGTCAGATGGTTTACTTGC 58 NA Rattus norvegicus 81 Faxc ENSRNOG00000010106 ENSRNOT00000013599 2 1 1 80 5 36077000 36082013 TCCTGGTCATTAGGAAGCA 58 36082056 36082075 CACCATTGTTAGGTCTTGCA 59 NA Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 3 2 2 80 20 30708890 30708908 AAAGCATCCTAATGGCCTG 58 30707554 30708846 CAGGAGCCACAATTTCTGG 59 NA Rattus norvegicus 81 Otor ENSRNOG00000028721 ENSRNOT00000034252 1 1 1 80 3 137154596 137154618 GGCAGCAGATCTATGTTTATTCC 60 137154658 137155597 GGTCACCATAAACACTGCC 59 NA Rattus norvegicus 81 RGD1563680 ENSRNOG00000004571 ENSRNOT00000006177 2 1 1 80 3 107229495 107229518 CTGTTATAAACAGTATGCTACGGG 60 107229556 107229925 TCACGATGCACTGATAGACC 60 NA Rattus norvegicus 81 Scand1 ENSRNOG00000019987 ENSRNOT00000027076 3 1 1 90 3 152382378 152382396 ACTTCACGTGACTTGTAGG 57 152382207 152382324 CCTTCTGCGTCTCTAACAG 58 NA InUTR Rattus norvegicus 81 AABR07017676.1 ENSRNOG00000046956 ENSRNOT00000071501 1 1 1 60 15 29987574 29987690 GGGATAAACTTCCTCCTGAGAG 60 29987535 29987556 CATGAACATCAGGTTGAGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 3 2 2 80 6 93582324 93582347 CTGAATCATCAGACATAACCTCAC 59 93582384 93584129 GTAGAGTTTCAGTGCTGTCTC 59 NA Rattus norvegicus 81 Olr841 ENSRNOG00000049788 ENSRNOT00000073545 2 1 1 60 5 64622204 64622224 TCACTATCCTTGATTCTCACC 57 64622164 64622182 AAGGAGAGGTTGCTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552939 ENSRNOG00000028712 ENSRNOT00000033631 1 1 1 80 18 68753292 68755377 CACAGCAGGTATTAAGGAATCC 59 68753233 68753251 GTTCACATGTCACGTGGTG 60 NA Rattus norvegicus 81 P4htm ENSRNOG00000020249 ENSRNOT00000027466 1 1 1 80 8 117370778 117382047 CATTGCTCTTCGAAATCCCA 59 117370717 117370736 GTAACCCTTTCATCTGTGCC 59 NA Rattus norvegicus 81 Gpr34 ENSRNOG00000039759 ENSRNOT00000060988 2 1 1 188 X 10030525 10031157 CCTCAACTCAGTTCCTGTG 58 10024589 10024607 AGCTGTCAACTGTAGTCGT 59 NA InUTR Rattus norvegicus 81 Cct5 ENSRNOG00000011632 ENSRNOT00000015886 3 1 1 80 2 84669301 84669319 AGTCCGAGCTAGACAAGTG 59 84667807 84669260 TACTGCATATCATTACTGCCCT 59 NA Rattus norvegicus 81 Psgb1 ENSRNOG00000027288 ENSRNOT00000037132 1 1 1 80 1 79187826 79187848 GATTGTACACCCTAGGAATTCTG 59 79187888 79189078 ACACAAGACTCTCCACCTG 59 NA Rattus norvegicus 81 Olr1597 ENSRNOG00000003555 ENSRNOT00000004719 1 1 1 60 13 92342952 92342970 GAATCATCCCACGAATGCT 58 92342910 92342931 CCCATAAAGGAAATCACCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncaph ENSRNOG00000012051 ENSRNOT00000016157 3 1 1 80 3 119594940 119594959 CACTCTTCCTGCAGATTTCC 59 119592034 119594899 ATCTTAAGCGACCTTATGTCC 58 NA Rattus norvegicus 81 Sf3b3 ENSRNOG00000017724 ENSRNOT00000023854 3 1 1 80 19 43396943 43397453 TGGAAATGGATTATGAGGAAGC 59 43397490 43397512 CATAGAAAGTAAGTGTCTGCTGG 59 NA Rattus norvegicus 81 Rere ENSRNOG00000017940 ENSRNOT00000024443 2 1 1 80 5 167656896 167657137 ACAAAGACCCAGGAGATCAG 59 167657180 167657198 ATCATTGACACTGCGACTG 58 NA Rattus norvegicus 81 Eed ENSRNOG00000017509 ENSRNOT00000024082 1 1 1 80 1 154212673 154215813 AGACGAGAATGACGATGCT 59 154212611 154212630 GCATTTGGTGTATTTGTGGG 58 NA Rattus norvegicus 81 Nps ENSRNOG00000036653 ENSRNOT00000054896 3 1 1 60 1 207508583 207508602 ACGTGATTTGGAGTTATCCG 58 207512021 207512041 AGAAAGTAATCAGGCTTCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Olr1605 ENSRNOG00000021557 ENSRNOT00000029318 1 1 1 60 15 12128439 12128461 GCTTTCTATACCAATGTACTGCC 60 12128401 12128421 ACACAACCTTGTCTTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag6 ENSRNOG00000025787 ENSRNOT00000022328 1 1 1 81 11 88424672 88424690 CAATTCGTGCAGATGGTGG 60 88424734 88442887 GCAAAGACATTACACCTGCA 59 NA Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 3 2 2 93 5 127165230 127213365 ACAAGTGCATGTTCGAAGG 59 127213422 127213440 AGGTATGGTTTCTCGCCTG 60 NA Rattus norvegicus 81 Rnpep ENSRNOG00000006720 ENSRNOT00000009198 1 1 1 80 13 52097685 52097705 TACTGCTTTGTCTCATACCTG 58 52097451 52097645 CTCATCTACATAGGCCTTGAG 58 NA Rattus norvegicus 81 AABR07047694.1 ENSRNOG00000053101 ENSRNOT00000077885 1 1 1 61 5 43469365 43469383 TTCAGGTTTACTTGGCGTG 58 43469408 43469428 CATTATTATCCAGCCCGCA 58 NA DesignRelaxed Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054,ENSRNOT00000071503 2 2 2 80 1 100709014 100709033 CAACTGGAAACAGTGGTGAC 59 100709076 100710227 CAGCAGAGGACCATCTGTC 60 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330,ENSRNOT00000065073 3 2 2 67 9 113355577 113358500 TGAGTTCTTGGATACAGCCC 60 113355529 113355547 TATGAAGCATGTTGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Fam50b ENSRNOG00000017083 ENSRNOT00000022929 1 1 1 60 17 30865185 30865203 AAGCAGAAGGAGCAGATGG 60 30865143 30865163 ACTTCATGATGGTCTCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt1 ENSRNOG00000053494 ENSRNOT00000090206 3 1 1 81 15 34610175 34610607 TAAGATCAGCATATAAGGGAGACTC 60 34610118 34610140 CCACGTCCATAAGATACAATACC 59 NA Rattus norvegicus 81 Sap30bp ENSRNOG00000005482 ENSRNOT00000007362 2 1 1 80 10 104484758 104484777 ATGAGAACAGTAAGCAGTCG 58 104487329 104501495 CTTCTGTGTTATCCTTTGGGT 58 NA Rattus norvegicus 81 Nle1 ENSRNOG00000008287 ENSRNOT00000011320 3 1 1 80 10 70255626 70255787 ATGGCCAGATTCTCCTGTG 60 70255564 70255582 CTGTGATCCACTTGCTGTG 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 1 1 2 144 2 86474439 86475031 AGGACCTTCTGTCATTTACAG 58 86473685 86474334 TTAGAGAAAGCAAGACCCAG 57 NA Rattus norvegicus 81 Ubxn10 ENSRNOG00000027731 ENSRNOT00000000167 2 1 1 60 5 157161058 157161076 AGTCAAGCCAGGAAGACTC 59 157161016 157161040 CGGATGATGAATTTCTTCTCTAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam71f2 ENSRNOG00000039383 ENSRNOT00000060353 2 1 1 80 4 56556712 56556732 TGTCAACTGATCCATTCTCCA 59 56556771 56560465 CTTAGTGACCTGGATAAAGGTG 58 NA Rattus norvegicus 81 Aup1 ENSRNOG00000007842 ENSRNOT00000010602 3 1 1 86 4 113889742 113889760 ATTTGCCAAGTCTTCCTGG 58 113889808 113889930 TCTCTGAATCTCCTTCTTGCA 59 NA Rattus norvegicus 81 Cd81 ENSRNOG00000020451 ENSRNOT00000027760 3 1 1 80 1 216252299 216252712 ACTCAGCTTCTGAAGGAAGAC 60 216252754 216252772 GGCTGCAATTCCAATGAGG 60 NA Rattus norvegicus 81 AABR07054265.1 ENSRNOG00000050729 ENSRNOT00000075429 2 1 1 80 3 145810756 145810776 TGGATCCTTCTCAGAAGAGTC 59 145810489 145810714 CCCAAACGTAGCCTATAGC 58 NA Rattus norvegicus 81 LOC100362339 ENSRNOG00000018471 ENSRNOT00000024916 3 1 1 61 17 54058087 54058105 GTGGACACAGTCAAGTTGG 59 54058125 54058148 TAGAACCAGTTCTCATCATATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028245.1 ENSRNOG00000061031 ENSRNOT00000073575 3 1 1 60 17 62263853 62263872 GTTTCTGTTAGCTGGCTTCG 60 62263894 62263913 TCCTTGTTGCTTGATGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm9 ENSRNOG00000021493 ENSRNOT00000066370 3 1 1 80 1 57545654 57545672 TGAGTATGGCCAAGAGCTG 60 57534986 57545613 TCTGTCCTTAGTTCTCTTCCTG 59 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 3 1 1 76 8 81963917 81968420 AAAGATTGCAGAAAGGGCA 58 81968458 81968478 CTGCTTGTTCTTCATCTTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr400 ENSRNOG00000046801 ENSRNOT00000047879 3 1 1 60 3 15895888 15895907 GAATCTGCAAAGCCTTGTCC 60 15895927 15895948 CCATAGTACAAGGAAACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cinp ENSRNOG00000008035 ENSRNOT00000010598 3 1 1 81 6 135297057 135300074 AGTCACCTTGTTGAGTAAAGAG 58 135296997 135297016 CAGGTTTGTCTTCTCTTCCT 57 NA Rattus norvegicus 81 Rn60_X_0743.2 ENSRNOG00000051181 ENSRNOT00000076218 3 1 1 60 X 73481549 73481569 TGGCAATTACAACAACCAGTC 60 73481591 73481609 GCCTCCAAAGTTTCCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1528 ENSRNOG00000039716 ENSRNOT00000041445 3 1 1 60 11 43144556 43144576 CCTGAGAACAAAGTCTGAGAG 58 43144598 43144616 GAGATGGGAACTGCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lbx2 ENSRNOG00000052374 ENSRNOT00000086359 2 1 1 167 4 113918893 113918911 ACTTTCCAGGGCCATTCTC 60 113920110 113920130 GTACTTCTGGAAGACGAATCG 59 NA DesignNoJunction Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 3 3 3 81 13 113847486 113847504 GAAAGGAGACAGCAGTGTG 59 113844635 113847442 ACAGGATTTCACCTTGAAGC 59 NA Rattus norvegicus 81 Vom2r24 ENSRNOG00000049838 ENSRNOT00000072660 1 1 1 80 8 3977073 3977094 CTCCAAAGGAACAGAAATTGTC 58 3976044 3977032 ATACAGACCGTGGAACCTC 59 NA Rattus norvegicus 81 Olr407 ENSRNOG00000054399 ENSRNOT00000082831 3 1 1 60 3 16241649 16241667 TGTACTCTGTCCTGTTCCT 57 16241691 16241709 ATGATTAGCAGGTTTGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553180 ENSRNOG00000048674 ENSRNOT00000027402 2 1 1 60 18 29952064 29952084 TTGATAAAGGAACTCCCTCCA 59 29952106 29952124 ACATCCAGGACTTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 3 2 2 80 1 257615243 257620410 AAGATGTTAGAAGAGGCTCG 57 257620452 257620471 TTCAAGCAAATGTTGCAGTC 58 NA Rattus norvegicus 81 Emc9 ENSRNOG00000019162 ENSRNOT00000026001 2 1 1 82 15 34259550 34262587 TTTGGATGATCAGAGCCCT 58 34259486 34259504 TAATAAGCACTGCGTTGGG 58 NA Rattus norvegicus 81 LOC684480 ENSRNOG00000046377 ENSRNOT00000072081 3 1 1 80 10 34430170 34430394 AGAGCTTGACTGGAGAAGG 59 34425667 34425685 GGATCCAAGGTCACATCCA 59 NA Rattus norvegicus 81 RGD1359108 ENSRNOG00000009478 ENSRNOT00000013181 1 1 1 80 5 50681193 50682785 TGGAAGATCAGGGTCAGAG 58 50681131 50681149 ATCTCATAGACGCAAGCAG 57 NA Rattus norvegicus 81 RGD1359108 ENSRNOG00000009478 ENSRNOT00000013181 2 1 1 80 5 50679112 50680556 CTTTCTTCTCAATGCCATCAG 57 50679052 50679071 TTTACTTTCTCTGCACTGCT 58 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 1 2 2 80 7 45370704 45370725 ACCATTGAAGGAATCATCACTC 59 45370765 45372061 TAGGAGGCAACAGATAACGG 59 NA Rattus norvegicus 81 Nepn ENSRNOG00000000410 ENSRNOT00000066492 1 1 1 80 20 33528037 33539114 TCAGACCTCCTATCTAACCTC 58 33539153 33539174 TTCAATAGACTCTGTTCCACTG 58 NA Rattus norvegicus 81 Kcnq2 ENSRNOG00000011624 ENSRNOT00000049961 3 1 1 80 3 176597984 176598677 AACTCAGAAGAAGCAAGCC 58 176597922 176597941 ATCTTCAGTCACAAACTCGC 59 NA Rattus norvegicus 81 Mir3556b ENSRNOG00000035509 ENSRNOT00000053632 3 1 1 63 13 113782639 113782657 ACCGATTTCAAATGGTGCT 58 113782594 113782612 ACAGGCTGACCGATTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd35 ENSRNOG00000025108 ENSRNOT00000056225 2 1 1 80 2 198807499 198807517 CATGCAGCTATCTGCTCAC 59 198807558 198808255 GATCAAAGCTGATTTGTCATCC 58 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182,ENSRNOT00000091167 2 3 3 83 15 35002484 35002503 TATGTCACCTTCTGTGGTGG 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 RGD1564854 ENSRNOG00000018832 ENSRNOT00000025501 3 1 1 80 3 13949186 13949207 ATCTTGCCTAAGATCTCTACAC 57 13951155 13951519 TGTCTTTATTAGCAGTGAGACC 58 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808,ENSRNOT00000072263 2 4 4 81 5 127571422 127571440 TCTGTGCTGTCTGTCATCG 60 127571483 127579908 AGTAGCTAATCTCCTGTGGTG 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138,ENSRNOT00000016221 1 2 2 80 10 13964984 13965003 TACAGCTCTACCATTCACCC 59 13964729 13964941 CTGACCGTTCAAAGGACTC 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600,ENSRNOT00000067118 1 2 2 80 6 136414742 136414760 CATACAACGGCAGGTTGAC 59 136412043 136414700 TAAGCTGGTTACGAATCTGCA 60 NA Rattus norvegicus 81 Sfta2 ENSRNOG00000048987 ENSRNOT00000074460 2 1 1 66 20 3605595 3605613 GATGTGCCTCTTCCTCCTC 60 3605338 3605356 CAAAGTCACCTTTGTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07018165.1 ENSRNOG00000013433 ENSRNOT00000017939 2 1 1 60 15 44442850 44442869 CATGCAGTTAGAAGCAAGTC 57 44442809 44442829 GGTTGATTCTTTCCAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd1l ENSRNOG00000017669 ENSRNOT00000043937 2 1 1 80 2 199739728 199741090 ACTATATGGATTACAGAGGGTACAG 59 199739672 199739691 TCTTAATGGCCAGGTGTCTC 60 NA Rattus norvegicus 81 Gsc ENSRNOG00000010605 ENSRNOT00000014204 1 1 1 83 6 128148027 128148045 GACAAAGTACCCAGACGTG 58 128147601 128147980 TTAAACCAGACCTCCACCT 58 NA Rattus norvegicus 81 Mir350 ENSRNOG00000047684 ENSRNOT00000071079 2 1 1 63 13 43827514 43827532 TAAAGTGCACGTGCTTTGG 59 43827559 43827577 GGGTGAAAGTGTATGGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549173 ENSRNOG00000045644 ENSRNOT00000074763 1 1 1 62 17 43807299 43807317 TCGCTCAGGACTTCAAGAC 60 43807255 43807273 CTTCCTGTAGGGCCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr344 ENSRNOG00000030326 ENSRNOT00000051124 2 1 1 60 1 229824624 229824648 CATTCAGTCTCATCTATCTCATCAC 59 229824665 229824684 CAGATCAACACAATCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709 3 1 2 81 5 58309286 58309304 ATAGCCGAAGTCCTTTGGT 59 58308560 58308970 ATGTTCTCTTAGCTCTTGTCG 58 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000073138,ENSRNOT00000016133 2 2 2 80 10 66209962 66209980 GAGGAACAACTACTGCTGG 58 66210023 66211640 AGATTTCTTCAGAGTCTGCC 57 NA Rattus norvegicus 81 RGD1564827 ENSRNOG00000017806 ENSRNOT00000039754 1 1 1 80 17 4121467 4121848 TCCATATGAAGGAAAGGAAGGA 59 4121408 4121426 GGGACAAACTCAATGCCTG 59 NA Rattus norvegicus 81 Il12rb2 ENSRNOG00000007270 ENSRNOT00000009883 2 1 1 80 4 98114094 98114945 CACTTTACAGTTAACTGGACCA 58 98114035 98114054 AGACGACTACAATTCTGACG 58 NA Rattus norvegicus 81 Il12rb2 ENSRNOG00000007270 ENSRNOT00000009883 3 1 1 80 4 98114094 98114945 CACTTTACAGTTAACTGGACCA 58 98114035 98114055 AGACGACTACAATTCTGACGA 59 NA Rattus norvegicus 81 Olr1587 ENSRNOG00000050941 ENSRNOT00000049819 3 1 1 60 13 92136628 92136647 CCTGTTAAGTGTCATGGCTC 59 92136670 92136688 ATGGTAGTGTAATGGGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 1 1 1 70 7 12419019 12420968 AGTTTGACTGAGACCCAGC 60 12418967 12418985 TATTTCCGGAAGCCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Urb2 ENSRNOG00000026853 ENSRNOT00000036042 2 1 1 80 19 56817998 56820598 TGCCACTCTAAGGTGATGC 60 56820642 56820660 TTCATGCAGCACTGAAAGC 60 NA Rattus norvegicus 81 RGD1310257 ENSRNOG00000014186 ENSRNOT00000018989 3 1 1 63 1 75354550 75354569 CATGTCCAACAAGTCCACAG 59 75347355 75347373 CTTGACAGTGATGAAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07065970.1 ENSRNOG00000000124 ENSRNOT00000000136 2 1 1 60 9 110726 110744 TACTGAGTACCTGATGCCC 58 110684 110704 TGGGAAATAGTAGAGAAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam161b ENSRNOG00000011112 ENSRNOT00000014814 2 1 1 80 6 108062855 108063097 GAGAACCGGAACAATGACC 59 108062793 108062811 CCTGGTTTGGATTCGTCTC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466,ENSRNOT00000015420,ENSRNOT00000088049 1 3 3 97 5 127660361 127660379 TTCAAAGTGAAGGATGGCC 58 127651617 127660301 GCCTTCTTATCTGAATCCGG 58 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129,ENSRNOT00000065145 2 2 2 80 10 102375785 102375803 TTCTTACCAGTTCCGCCTC 59 102373539 102375741 GGAAGGGAGACCCTTTCTG 59 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129,ENSRNOT00000065145 3 2 2 80 10 102357258 102357360 TTCACCTACTACAGCTTCCG 59 102357197 102357219 CTGGATCTTTCTAGAAGGTTGAC 59 NA Rattus norvegicus 81 Mir29b2 ENSRNOG00000035637 ENSRNOT00000053760 1 1 1 64 13 113782064 113782082 AAGCTGGTTTCACATGGTG 59 113782109 113782128 CACTGATTTCAAATGGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC497899 ENSRNOG00000022555 ENSRNOT00000038838 2 1 1 172 10 36710610 36711486 TGGGTTATACAGAAGCAAACC 58 36709956 36709977 CATTTCCTGTTCAACTACTTCC 57 NA InUTR Rattus norvegicus 81 Spink8 ENSRNOG00000037199 ENSRNOT00000056180 2 1 1 80 8 117911331 117912776 GAAAGAGACAAAGGCCCTG 59 117912820 117912838 CATATCGGCTCACTGAGCT 59 NA Rattus norvegicus 81 Tmem127 ENSRNOG00000022727 ENSRNOT00000031577 1 1 1 84 3 119685883 119686638 CCTCACTGTCCTACAGTGTG 60 119686685 119686703 CTTATGCTGTTGCTGCTGG 60 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 3 2 2 86 13 51127556 51127574 CAGTGAATGCAACTCCCAC 59 51127624 51128196 AGCAAATGATCTCCTGGGT 59 NA Rattus norvegicus 81 Lrrc4 ENSRNOG00000008098 ENSRNOT00000010673 1 1 1 60 4 56113509 56113528 GACATGCCCAATCTTACACC 59 56113468 56113486 AGTGGTTCCCTGACATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnc1 ENSRNOG00000018943 ENSRNOT00000025606 2 1 1 81 16 7295049 7295067 TCACGGAAGATGACATCGA 59 7295111 7295216 TCCAGGAACTCGTCATAGTC 59 NA Rattus norvegicus 81 Hemk1 ENSRNOG00000015458 ENSRNOT00000020781 3 1 1 93 8 116083542 116084779 ACCTTGATATAACCTCAGAGGG 59 116083470 116083488 TTGCGGAAGATGTAGGGAG 59 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256,ENSRNOT00000056221 1 2 2 80 7 119841358 119841376 CGTGTGAAGACATGGAAGC 59 119841418 119842210 CTCTTTGTCAGTGGTGAACTC 59 NA Rattus norvegicus 81 Gcc1 ENSRNOG00000007792 ENSRNOT00000010246 3 1 1 91 4 55711529 55712540 AAATGAGGAAGACAGCCCT 59 55711456 55711474 AGAGATCTGGTTCTCCAGG 58 NA Rattus norvegicus 81 AC105662.1 ENSRNOG00000060851 ENSRNOT00000081220 2 1 1 84 5 173003686 173003707 GATCCAGGAGGAGAAGCAG 59 173003620 173003642 GAAGACCTCATTCAAGTCATCAG 59 NA Rattus norvegicus 81 Grid2 ENSRNOG00000006174 ENSRNOT00000064696 3 1 1 80 4 94697209 94697231 AGTCATCCTAAGAGTAGTCACAG 59 94697268 94715498 ATGCCACGGATATCATATTCAC 59 NA Rattus norvegicus 81 Cbr4 ENSRNOG00000024411 ENSRNOT00000032199 3 1 1 81 16 31968654 31970173 GCAGCTGGTATTAACAGAGAC 59 31968593 31968612 CCAAGAGGTTGGTATGAAGC 59 NA Rattus norvegicus 81 Ptpn7 ENSRNOG00000005807 ENSRNOT00000007833 2 1 1 80 13 51961071 51962445 AAGACCATCTTGCCAAATCC 59 51962488 51962506 GGCATTGATGTAGTCGCTG 59 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 1 2 2 80 18 11780756 11780775 AAGCCTGTAAAGATGTGACC 58 11779025 11780716 ACTCCTTCAAACTAACTCTTCC 58 NA Rattus norvegicus 81 Syt2 ENSRNOG00000004756 ENSRNOT00000006637 3 1 1 80 13 51572734 51572756 GAAGAAATATGAGACCAAGGTGC 60 51572796 51573077 TGGTATGGCACCTTGAAGG 60 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 1 2 2 80 1 216871418 216871732 CAATATGAGGACTACAGCCC 58 216871357 216871377 CTGTAGAGTGTGAAGAATCCC 58 NA Rattus norvegicus 81 Zbtb42 ENSRNOG00000037562 ENSRNOT00000030879 2 1 1 210 6 137243241 137243259 GGAAAGCTTGCAGAACGAG 60 137243859 137243878 GATGGAAGTAGACACTGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ighg ENSRNOG00000030332 ENSRNOT00000006975 2 1 1 80 6 139141165 139141183 TCAGATGCAAGGTCACCAG 60 139140987 139141122 GAACTTGTGTTCTGCCTTCG 60 NA Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000068197,ENSRNOT00000077146 2 2 2 80 7 12505610 12505628 AGTATGATGCAGAACGGGA 59 12505672 12505792 CACCGTACTTGATCTTGCT 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278,ENSRNOT00000031189,ENSRNOT00000008074,ENSRNOT00000085285 3 4 5 83 8 6137081 6137099 TCAGCATGAGCAGCTACAG 60 6135766 6137034 TGATGGTGTCTCCTGTGTC 59 NA Rattus norvegicus 81 Yipf1 ENSRNOG00000010512 ENSRNOT00000014091 1 1 1 80 5 126934342 126935832 CTTGCAGTTTGAAGAATTCGG 59 126935874 126935892 GGGTCCTCGATGTTTATCG 58 NA Rattus norvegicus 81 Rabggta ENSRNOG00000030483 ENSRNOT00000048455 3 1 1 80 15 34396941 34397076 AGAATAAATGGTGCCTGCTG 59 34396880 34396898 ACTGCAGTGTTTCCTTCTC 58 NA Rattus norvegicus 81 Lig1 ENSRNOG00000014193 ENSRNOT00000019799 1 1 1 80 1 75374391 75374553 CTGAGCAGTTTCTTCACACC 59 75374595 75374614 TTCCTTCCTTGGAGTGTCTG 59 NA Rattus norvegicus 81 Heca ENSRNOG00000060972 ENSRNOT00000081259 1 1 1 80 1 13043287 13049618 CTTGTCACCTTCAAGGGAG 58 13043225 13043244 TGCAGATGATCTTGTGAACC 58 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 3 4 4 80 9 104657607 104663122 TGAAGACTATGATGGCTTAGG 57 104657547 104657566 TATAGGGAAGTTGTGCAAGC 58 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 2 2 2 80 20 32247686 32253324 ACACATAAAGCAGAACGCAC 60 32247625 32247644 TCTCTGAAGCCTTTCAAGGT 59 NA Rattus norvegicus 81 Nop10 ENSRNOG00000005184 ENSRNOT00000006887 2 1 1 69 3 103747760 103747778 ATTACCTCAACGAGCAGGG 60 103748039 103748057 CAAGTCTGTTGTCCCATGG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1559972 ENSRNOG00000031273 ENSRNOT00000041326 1 1 1 60 11 82366303 82366322 CACTTGAAGAGGAACCAGAG 58 82366262 82366283 CCAACGTCCATAATTTATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458,ENSRNOT00000081087 3 2 2 80 14 37214456 37216374 CACCAATTCTTAGAGCAATCGA 59 37214397 37214417 TATTGTCCTGCTGAACTCCAG 60 NA Rattus norvegicus 81 Eps15 ENSRNOG00000010299 ENSRNOT00000064145 2 1 1 80 5 128987234 128987253 AAGAACAATGTGGAACAGGA 57 128987295 128997625 ATCTTGAAGATCCTGAGCCT 58 NA Rattus norvegicus 81 Eps15 ENSRNOG00000010299 ENSRNOT00000064145 3 1 1 80 5 128987234 128987254 AAGAACAATGTGGAACAGGAC 59 128987295 128997625 ATCTTGAAGATCCTGAGCCT 58 NA Rattus norvegicus 81 Caln1 ENSRNOG00000000886 ENSRNOT00000001185 1 1 1 80 12 29655105 29655123 AACCGATCTCTGTCTGCAG 60 29537539 29655061 GGCTTCTCGGATTTCATCG 59 NA Rattus norvegicus 81 Dhrs1 ENSRNOG00000020264 ENSRNOT00000027511 2 1 1 80 15 34428334 34428352 CCACCAAGTCATTCTGGGA 59 34426206 34428291 AGCATAAGTAGTGGCCTCTG 59 NA Rattus norvegicus 81 Snrpa ENSRNOG00000001501 ENSRNOT00000002053 1 1 1 80 1 84000037 84001525 CTCTTCAACCAGTTCCCTG 58 83999975 83999994 ATTGTCAAACTCCACGAAGG 59 NA Rattus norvegicus 81 Stim2 ENSRNOG00000002956 ENSRNOT00000004006 3 1 1 80 14 59244203 59272258 CGAGAGTGATGAGTTTATCAGAG 59 59244145 59244166 TTATCTTCTCTGTGCAGATGAC 58 NA Rattus norvegicus 81 Pitx1 ENSRNOG00000011423 ENSRNOT00000015307 1 1 1 272 17 8880904 8880922 CACTCACTTCACAAGCCAG 59 8882996 8883014 TTGTTGTAGGAGTAGCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Itga10 ENSRNOG00000021217 ENSRNOT00000028812 1 1 1 80 2 198776610 198777095 CCAGAGCAGATACAGGTAGG 59 198777138 198777156 CTTTGTCCGGAAATCTCCC 58 NA Rattus norvegicus 81 Mdp1 ENSRNOG00000019840 ENSRNOT00000026914 3 1 1 91 15 34338682 34338809 TGATCTGGATTACACGCTC 57 34338539 34338557 GCCTATCTCGTACAGTTCC 57 NA Rattus norvegicus 81 Gramd4 ENSRNOG00000016968 ENSRNOT00000022746 2 1 1 80 7 127009285 127010086 GTATGTGACAGAGAATTACCTGTG 59 127010125 127010143 TCCATCAGCTTGATCACCT 58 NA Rattus norvegicus 81 Ccl17 ENSRNOG00000016278 ENSRNOT00000021842 2 1 1 80 19 10619944 10619962 CATTCCCATCAGGAAGCTG 58 10619299 10619900 TGGACAGTCTCAAACACGA 59 NA Rattus norvegicus 81 Pik3c3 ENSRNOG00000017840 ENSRNOT00000066816 3 1 1 80 18 23034176 23035902 CTGCGAAGGTATTCAAATCTG 58 23035942 23035962 TGGTTCAAGAGCAATATCTGG 58 NA Rattus norvegicus 81 Igh-1a ENSRNOG00000048402 ENSRNOT00000045874 1 1 1 80 6 138092879 138093006 GTCACAAATGCCCAGTTCC 60 138092817 138092835 TCAAGAGGATGTCCTTGGG 59 NA Rattus norvegicus 81 Olr529 ENSRNOG00000054730 ENSRNOT00000057508 3 1 1 60 3 74502583 74502601 GCAACTCCAATGTCATCCA 58 74502541 74502561 CATGAGAGGGCTATAAGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1202 ENSRNOG00000051309 ENSRNOT00000049392 2 1 1 60 8 40411462 40411481 GCGTTCACCTATTTAACCAC 57 40411504 40411522 CTGAAGCAAACCTTCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yeats2 ENSRNOG00000023107 ENSRNOT00000064212 3 1 1 80 11 84345730 84345748 CAGTCAACTCAAGCCACTG 59 84344687 84345690 GACTGAACCACTTTATTCACAGG 60 NA Rattus norvegicus 81 Eif2ak3 ENSRNOG00000006069 ENSRNOT00000008451 1 1 1 80 4 98680086 98680105 GATGATGTTGTTCTGGTTGG 57 98680146 98681920 ACAGATATACCTCAGCTTTCC 57 NA Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 3 2 2 80 8 48475092 48475200 CAAGTCTACAAGGCTCCAG 58 48475241 48475262 CTCCTTAAGCTCTTGTATGTCC 58 NA Rattus norvegicus 81 Sf3b5 ENSRNOG00000014908 ENSRNOT00000019994 1 1 1 60 1 7101979 7101997 CTGCTCCTACATGGGTCAC 60 7102020 7102039 GCTCTCATTCTCAGCAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp397 ENSRNOG00000048101 ENSRNOT00000071548 3 1 1 106 18 15858815 15858833 ATATGGGTTCAACAGCACG 58 15858903 15859125 GGATTATCTGGGACCTGCT 59 NA Rattus norvegicus 81 Myh6 ENSRNOG00000025757 ENSRNOT00000023302 3 1 1 80 15 33625534 33625778 AGACATAGAGACCTACCTTCTG 58 33625475 33625498 TGGTAGAAGATATGGTAGTTCCTC 59 NA Rattus norvegicus 81 Olr1347 ENSRNOG00000047997 ENSRNOT00000051413 3 1 1 60 9 99735802 99735820 CATGTATGCTCAGCCAGGT 60 99735843 99735862 GAAGACAGAGACCACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1002 ENSRNOG00000046978 ENSRNOT00000050967 1 1 1 60 7 6216513 6216534 TCTTAAACCATCAGTCAAGCAG 59 6216553 6216573 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 3 1 1 74 1 81844129 81845855 TAAGCTTGTGCTCTTTGGC 59 81844073 81844091 AAAGGGAAAGAGACACCAC 57 NA DesignNoJunction Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 2 2 2 80 16 37159455 37159473 TGACCTCTGCTTAGCTTCC 59 37155037 37159413 CATGTGGATTTACACAACCCT 59 NA Rattus norvegicus 81 RGD1559786 ENSRNOG00000012724 ENSRNOT00000065275 1 1 1 80 5 127491848 127492936 CAAGTCTTACAATGCAGAAGAC 58 127492977 127492995 AAGTCAACTGGTTCAAGGC 58 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 2 2 2 99 8 49299518 49299536 CGAGGAACTGGTACTGGTG 60 49298213 49298960 TTCGGATGGGCTCATAGTC 59 NA Rattus norvegicus 81 Hpca ENSRNOG00000006979 ENSRNOT00000009153 1 1 1 80 5 147302997 147303015 TTCAGCATGTACGACCTGG 60 147296327 147302954 CATCTTGTAAATGGCCTGCA 59 NA Rattus norvegicus 81 Olr1382 ENSRNOG00000050905 ENSRNOT00000060972 1 1 1 60 10 12817569 12817588 CTCCTTAAACTCTCCTGCTC 57 12817528 12817552 CTCCCTCTGTATTAATCATCAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_11_0375.7 ENSRNOG00000051348 ENSRNOT00000076161 1 1 1 60 11 33859104 33859123 GGGCAGTTGATAGAGAAGAC 58 33859146 33859164 AGCCTTGGATCATACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnps1 ENSRNOG00000008703 ENSRNOT00000010915 1 1 1 80 10 13793435 13793454 CTATGCGTACGTGGAATTCG 59 13793496 13795224 TGGCCATCTATTTGTCCTCC 60 NA Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952 1 1 2 80 16 24781219 24781350 GCTACTTCAAGATATACGTTCG 57 24781160 24781179 CACTGGACCTGTACTTACTG 57 NA Rattus norvegicus 81 Grin3b ENSRNOG00000012562 ENSRNOT00000017064 2 1 1 81 7 12770115 12770209 TTTGCTATCGAGGGCTACG 60 12770252 12770272 TGTACCTACTGATGAACTCCG 59 NA Rattus norvegicus 81 Olr1490 ENSRNOG00000050244 ENSRNOT00000072840 2 1 1 60 10 60391806 60391824 AACTTGTCCTTCACTGACC 57 60391848 60391866 TGTTCTGTAGCAACTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rer1 ENSRNOG00000014270 ENSRNOT00000019620 2 1 1 80 5 172485345 172485363 CAGTGTTGGAGACTCTGTC 58 172483340 172485303 CAGGACTGATAAATCTGTCCA 57 NA Rattus norvegicus 81 Rer1 ENSRNOG00000014270 ENSRNOT00000019620 3 1 1 80 5 172479513 172480998 GAAGACTCAGATGATGGCC 58 172479451 172479469 GAATTCTGGAAGCCTTCGA 58 NA Rattus norvegicus 81 Copg2 ENSRNOG00000011014 ENSRNOT00000033706 1 1 1 80 4 58094561 58094581 AGCAGAGACAGAGTATTTCGT 59 58093890 58094521 GTGTTGGTACAGTCAAACTGG 60 NA Rattus norvegicus 81 Olr1423 ENSRNOG00000049845 ENSRNOT00000045318 1 1 1 60 10 44122298 44122319 ATCCTACTCATCCATCTTCCTC 59 44122259 44122278 CTTCTTCCTACCCTCTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000071384 2 1 3 80 1 164705853 164706238 GCTGGAACTCTAGATGTTCC 58 164706281 164706299 CCCATTGCAGGTTGTAGTC 59 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 1 2 2 95 7 12517651 12517671 AGCAAGATCTGTGTAAATGGG 58 12516849 12517594 TTTGATGGCATTTCCCAGC 59 NA Rattus norvegicus 81 Olr901 ENSRNOG00000054865 ENSRNOT00000071164 2 1 1 60 7 5325038 5325059 TCATGTCCTAGAAATGATGTCC 58 5325077 5325098 TACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr905 ENSRNOG00000048201 ENSRNOT00000040030 2 1 1 60 7 5451117 5451135 TCATCACTCTCACCTTGCT 58 5451075 5451099 TTCTGGAGGAAGAAATACATAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmrn1 ENSRNOG00000024986 ENSRNOT00000030320 1 1 1 80 4 91001086 91003592 CTGCTCCCGAAGATCTCAG 60 91003632 91003654 CATCTCCATTCTAATGAGGTGAC 59 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 3 2 2 80 1 80345148 80345807 CCAAGAGAATTGAGGTGATGG 59 80345088 80345107 CGTTGTACTTCTGGTTGGTC 59 NA Rattus norvegicus 81 Rhox10 ENSRNOG00000040026 ENSRNOT00000061539 3 1 1 85 X 124207354 124207372 AGACCCAGTATCCTGATGC 59 124209420 124211272 TTTAAACCAAGCCTTCACCT 58 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 1 2 2 80 5 165924833 165924851 TCTGTCTCCCTTCCAACAC 59 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Ctsg ENSRNOG00000020647 ENSRNOT00000059677 3 1 1 81 15 35111818 35111838 CGTTTCCAATTCTACAACAGC 58 35111357 35111775 CAGAATCACCCTTGAAGGC 59 NA Rattus norvegicus 81 Btbd6 ENSRNOG00000014693 ENSRNOT00000019768 1 1 1 80 6 137786605 137786728 CCCACAAGTATGTCTTAGCTG 59 137786770 137786788 TTTCGGACTTGACTTCTGC 58 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 1 2 2 80 16 24981003 24982622 AGAAGGAAAGATTGAAGACGG 58 24983634 24983652 CCAGATGACTGTGAAACCA 57 NA Rattus norvegicus 81 Zadh2 ENSRNOG00000016239 ENSRNOT00000021729 2 1 1 128 18 80940035 80940053 AACTATGCAGAAGCTGGTG 58 80940145 80946158 ATACCAACGAATCGGTTCC 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288,ENSRNOT00000079535,ENSRNOT00000091789 1 3 3 80 8 82065108 82065129 CCCTATGATAGAAGGAGTGGAC 59 82065167 82067749 GATTCACTAATTCCCAGCAGAG 59 NA Rattus norvegicus 81 Polrmt ENSRNOG00000024879 ENSRNOT00000039232 2 1 1 81 7 12850547 12850665 CATGATGAACGAGGTATGCC 59 12850709 12850727 CTCCAGGAACTTAGCCAGG 60 NA Rattus norvegicus 81 Cenpj ENSRNOG00000022597 ENSRNOT00000065764 1 1 1 80 15 36775743 36775764 GCAAAGTCTTCGAGAAGTACAC 60 36772199 36775706 CATTCAGAGCCTGTATTTCTTCC 60 NA Rattus norvegicus 81 Chchd3 ENSRNOG00000013211 ENSRNOT00000018001 2 1 1 80 4 60194804 60194823 ATCGAATGATACGGAAGCAG 58 60132363 60194764 CTTTGTAGAATTCTGAGCTCCT 58 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 1 2 2 82 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861227 58861245 ATTTCTTCAGCTCGTGGAG 58 NA Rattus norvegicus 81 Fermt3 ENSRNOG00000021161 ENSRNOT00000028737 2 1 1 80 1 222259099 222259122 GATTTACTGACAGAGGAAATCGAC 60 222258873 222259066 CACTTTGTTGATATGGTACTGTAGG 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769,ENSRNOT00000007087 3 2 2 80 10 55580622 55582609 ATATCCCAGGTTATAATCTGCCC 60 55580564 55580582 TAGCAACTTCCAAAGGCCT 59 NA Rattus norvegicus 81 Adssl1 ENSRNOG00000046763 ENSRNOT00000073796 3 1 1 81 6 137193435 137193455 GTGGATGGCAAGGAATATGAC 59 137193498 137197112 CACCATTGCCAATGAACGA 59 NA Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 2 2 2 82 7 122955906 122957472 CAGCTCTGATCTCACTAGGG 59 122955843 122955861 TCCAAATGCGTTGTCACTG 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052,ENSRNOT00000087906,ENSRNOT00000014709 3 5 5 84 2 1511564 1511583 TCTCCCAGAATGAGTACCAC 59 1508846 1510429 CATGAATCACAGGTGGCTC 59 NA Rattus norvegicus 81 AABR07037412.1 ENSRNOG00000030999 ENSRNOT00000049138 2 1 1 60 X 20359834 20359858 TATATGGGAATCTACAAGAAGGGTG 60 20359798 20359816 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapre2 ENSRNOG00000049681 ENSRNOT00000075444 1 1 1 95 18 15764830 15770190 ACGAACAGGTTCATTCACTG 59 15770248 15770266 GGCATAGCAGCTCAATCTC 59 NA Rattus norvegicus 81 Pcdhb19 ENSRNOG00000039469 ENSRNOT00000060484 2 1 1 60 18 30575396 30575416 TTGGCTCACTGATTATCACTG 58 30575437 30575456 AGTTCACCATTAGTTCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hs2st1 ENSRNOG00000012549 ENSRNOT00000016872 2 1 1 80 2 250471307 250471325 TTCATCATGCTCCTGGAGG 59 250470408 250471266 GTGAGATTTCTTTCCTGTACGA 58 NA Rattus norvegicus 81 Ankrd13c ENSRNOG00000011340 ENSRNOT00000015170 2 1 1 81 2 264809251 264814660 GGTATCAATATCAGGCTTGACAC 59 264814700 264814719 TGAAGATGAAGCTCAGGTCC 60 NA Rattus norvegicus 81 AC094246.1 ENSRNOG00000022718 ENSRNOT00000031545 3 1 1 84 1 255710785 255710828 AGGACATTTACTACATCAGGCT 59 255710873 255710891 GTGAACTGGTTGATGGCAG 59 NA Rattus norvegicus 81 Zfp281 ENSRNOG00000058643 ENSRNOT00000088133 3 1 1 147 13 53507251 53507271 CTCAACGAAATCGGTAGCG 59 53531521 53531543 GGTTGAACATAACCATACTCTGG 59 NA InUTR Rattus norvegicus 81 Olr898 ENSRNOG00000046110 ENSRNOT00000051724 1 1 1 60 7 5251234 5251252 CACAACTGCCTGTATTCCA 58 5251192 5251210 GGAAATTGTCCTGTCTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr898 ENSRNOG00000046110 ENSRNOT00000051724 2 1 1 60 7 5250634 5250652 TGTAGCTGTGCTCAATACC 57 5250592 5250613 CCTTAGGGTGTAAATGAAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpt1b ENSRNOG00000010438 ENSRNOT00000013985 1 1 1 80 7 130399977 130399996 GAGAATCCTCGATGACACCT 59 130399622 130399934 CACTCTACCCTTCCTCCTG 59 NA Rattus norvegicus 81 Aplf ENSRNOG00000043059 ENSRNOT00000041234 1 1 1 80 4 119524964 119530079 TCTTGTTACAGGAAGAATCCC 57 119515822 119515840 ATCTTCATCCACAGCAACC 58 NA Rattus norvegicus 81 Syt4 ENSRNOG00000017333 ENSRNOT00000023594 1 1 1 80 18 24176286 24176305 CTACAAACACGCTCACTGTG 60 24175240 24176244 CGTAGGGATCTGAAAGTCCA 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959,ENSRNOT00000076142 1 2 3 93 1 32573329 32573347 AGAAGATCACGCATACCGG 60 32573404 32574298 CATCATACACCTTGCCACG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0752.4 ENSRNOG00000018301 ENSRNOT00000042584 2 1 1 60 X 74372035 74372054 GCTTCCTCTGTGTATTTGCC 59 74371994 74372018 CTGTACTGATGTATGTCTTCAAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000082338 3 1 2 84 14 64476815 64488647 TCAACCAGAAAGGAATCGAC 58 64476750 64476769 TGATAGATGGCCACTATGGG 59 NA Rattus norvegicus 81 Yars2 ENSRNOG00000025252 ENSRNOT00000034902 2 1 1 80 11 88885387 88886818 CTGTAGAAAGGTACCTGAAGCT 60 88885328 88885348 GTTCTTTGACATGTAGCTGCA 59 NA Rattus norvegicus 81 Ccdc92 ENSRNOG00000021691 ENSRNOT00000032739 3 1 1 96 12 37232826 37232844 AAGAACCTGCTCTTCCTCC 59 37232903 37233618 ATGTTAGATCTGTGCAGTGC 58 NA Rattus norvegicus 81 Rn60_10_0698.8 ENSRNOG00000051295 ENSRNOT00000075956 1 1 1 60 10 70086591 70086612 CAGAGTTCACTAAAGAAACTGG 57 70086552 70086573 TCATGTCCACCTCTTTAATACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trps1 ENSRNOG00000024998 ENSRNOT00000050774 1 1 1 80 7 90263418 90276512 TATGATGTACAGGTCACTTCAG 57 90263359 90263377 ATACTTGGTGTTGCCTTGG 58 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 3 2 2 81 3 118125098 118128244 TCAAGCTGACAAACTTTCCAG 59 118125037 118125055 TAGTTCCTGGTGACTGCAC 59 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000081162 3 1 2 60 20 3975887 3975906 TGATTACTGCAGTGACTTGC 59 3975846 3975864 TGCTTGGATTAAAGCAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan30 ENSRNOG00000030131 ENSRNOT00000039216 1 1 1 82 18 15873563 15873581 AAATGGAGAGGAGGCTGTG 59 15871802 15873518 GAGGTGAGGATCTTACCTGG 59 NA Rattus norvegicus 81 Mlx ENSRNOG00000019983 ENSRNOT00000027116 3 1 1 90 10 88998352 88998370 TAGAAAGCACCCACAAGGG 60 88998423 88998702 TCCTCATCATCTGTGTTGGG 60 NA Rattus norvegicus 81 Prr32 ENSRNOG00000049388 ENSRNOT00000074384 1 1 1 64 X 131617892 131617913 CTTGATCGTATTTCTACATGGC 57 131618768 131618786 TATGGATGAACGGCTATGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lyz2 ENSRNOG00000005825 ENSRNOT00000007747 2 1 1 60 7 60341114 60341134 GGATGTCTGGCTACTATGGAG 60 60339546 60339566 CTCTCATGCTGAGCTAAACAC 59 NA DesignNoJunction Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 2 2 2 83 6 93549993 93551766 TGAAACCTGAAGAGGTTACCT 59 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834 2 1 2 80 1 264097301 264097321 CGAACCTATAAAGCAAGGCTG 60 264097362 264098600 TTCGTACACATCGTTCTGGA 59 NA Rattus norvegicus 81 Cpsf3l ENSRNOG00000019712 ENSRNOT00000026725 3 1 1 80 5 173323637 173323661 CTTCACTTCTCAGATGATCAAAGAC 60 173323697 173333469 TCATCATCCACCTGAACTGTC 60 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 2 2 2 80 16 48966311 48966330 ATGATGGCCCTTGTTTAGGT 59 48962839 48966268 CAGCCATTTCTGCAACCTG 60 NA Rattus norvegicus 81 Ccdc86 ENSRNOG00000020925 ENSRNOT00000028405 2 1 1 81 1 227001362 227001381 GCTTCCTGTAATTCCGAAGG 59 226998671 227001318 AACCATCTGGGAGAACCTC 59 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653 3 1 2 96 10 16792786 16792804 TTTGATCGTGATGAGCGTG 59 16786790 16792729 CAACATGGTGATGATAACTCCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000078494,ENSRNOT00000088168,ENSRNOT00000081017 3 4 6 80 1 41325989 41359120 CTTCTACAGGTCCAATTCTGAC 59 41359161 41359179 ATCATGTTTCCCTTCTCGC 58 NA Rattus norvegicus 81 Afg3l1 ENSRNOG00000026994 ENSRNOT00000030399 1 1 1 80 19 56297110 56298394 CCTCTGCTGAAGGTATCCA 59 56298438 56298456 GTAGAGGTACTGCTCACGG 59 NA Rattus norvegicus 81 LOC100912356 ENSRNOG00000059274 ENSRNOT00000058358 2 1 1 60 5 107388154 107388173 CTCTGTGCTTTCCTAGTGGT 60 107388113 107388132 ATCCTAGACAGCAGGTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912204 ENSRNOG00000048626 ENSRNOT00000044928 3 1 1 60 11 43476588 43476608 TTCCTTCTCTGATTGCATGAC 58 43476627 43476648 GCATTCTGTAGTAACAAAGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lman2 ENSRNOG00000016161 ENSRNOT00000021638 1 1 1 95 17 9811667 9811686 GAACTGCATCGATGTCACAG 59 9811744 9814211 ATGAGGTCGTGGTTGTCAG 60 NA Rattus norvegicus 81 AABR07061057.1 ENSRNOG00000049049 ENSRNOT00000075709 2 1 1 60 4 103368970 103368990 AAGATCAGTAGAGTAGAGCCT 57 103368930 103368949 AATGTGTACCTTGGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem204 ENSRNOG00000016494 ENSRNOT00000022142 2 1 1 81 10 14431955 14442189 CCGTCAAACTACAGTTTGAC 57 14431893 14431911 ATGAAGGTGATCTGACCCA 58 NA Rattus norvegicus 81 Dlgap3 ENSRNOG00000014302 ENSRNOT00000019214 3 1 1 80 5 145301418 145301436 GGAGAAACTGGAACACTGG 58 145301477 145302505 ATCTTCTCTAAGATCTCCTCCG 58 NA Rattus norvegicus 81 LOC100362277 ENSRNOG00000038057 ENSRNOT00000043027 3 1 1 60 19 58412696 58412714 CAAAGCTACATGGCCAAGG 59 58412738 58412756 CCTTGGTTTGAACCTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcsk6 ENSRNOG00000011526 ENSRNOT00000015845 1 1 1 80 1 126930805 126930823 GGGTTCTATCACCACCAGG 60 126930865 126932463 GAGTCTCTGACTTTCATCAGC 59 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 3 1 1 109 18 25370078 25370454 AGTAAATGCCATGGGAAGC 58 25369987 25370008 CATAGGAACATGTTGTGAAGGA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07065789.2 ENSRNOG00000031918 ENSRNOT00000040523 1 1 1 86 6 141365023 141365121 TCTTCCTGGTGTCCTATCC 58 141364955 141364973 GAACAGGTGACAGACAGTG 58 NA Rattus norvegicus 81 Fgf2 ENSRNOG00000017392 ENSRNOT00000023388 1 1 1 89 2 124081771 124123351 CCCACACGTCAAACTACAG 59 124123404 124123422 TCCTTCATAGCCAGGTACC 58 NA Rattus norvegicus 81 Qdpr ENSRNOG00000003253 ENSRNOT00000004385 3 1 1 80 14 70169224 70169242 TAGGTGACCAGAAGGTGGA 60 70169283 70170173 TAAAGAGTGACTTGGATTTGGC 59 NA Rattus norvegicus 81 Olr803 ENSRNOG00000054505 ENSRNOT00000077710 3 1 1 60 4 71892900 71892918 GGTACACAGTGGTGATGAG 58 71892858 71892876 ACAAACCAAGAGACACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561662 ENSRNOG00000015297 ENSRNOT00000020516 2 1 1 91 9 15550643 15552393 AAAGAAGTGAGAGGTGCCA 59 15550570 15550588 TCCAGATCATAGTGCACGG 59 NA Rattus norvegicus 81 Stam2 ENSRNOG00000027447 ENSRNOT00000037857 3 1 1 80 3 38236849 38239975 CTTGAAGAAATTGATAGGAGGC 57 38236790 38236808 TTTGTTGTACAGCTCCAGG 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 1 2 2 80 20 25473760 25565638 CTGTATCTGAAAGCCACATCC 59 25473700 25473720 GGTCTAAATTGTCAGCATCCT 58 NA Rattus norvegicus 81 Vtcn1 ENSRNOG00000015279 ENSRNOT00000020566 1 1 1 80 2 203261047 203261070 CTACACATGTTATATCCACACCTC 59 203261109 203265477 TCTGGCATACTGAAGGCTC 59 NA Rattus norvegicus 81 Slc35d2 ENSRNOG00000027229 ENSRNOT00000036212 2 1 1 80 17 1619267 1619916 GGGTTAAATATTTGCATGGCAG 59 1619208 1619228 CACAGGTTGTTTAGGTTTCGA 59 NA Rattus norvegicus 81 Mmp17 ENSRNOG00000023643 ENSRNOT00000035881 1 1 1 80 12 30708361 30708469 CTTCAAAGGCAAGTATTTCTGG 58 30708302 30708320 CAGAAGCGATGCATTTGAG 58 NA Rattus norvegicus 81 Elane ENSRNOG00000033685 ENSRNOT00000014981 3 1 1 81 7 12639509 12639640 GTGAATGGCCGAAATTTCCA 60 12639447 12639465 AGATTTGTCGAGTGGGCTC 60 NA Rattus norvegicus 81 Mir344a-2 ENSRNOG00000046685 ENSRNOT00000053682 3 1 1 60 1 122309613 122309631 GCTCCTGGCTAGATTCCAG 60 122309571 122309589 GCTTACAGTCAGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682102 ENSRNOG00000048129 ENSRNOT00000072793 3 1 1 80 5 146024117 146030389 CAGGGATATGGGTTCAACTC 58 146024056 146024074 GCGTATACCATTCCCACTG 58 NA Rattus norvegicus 81 Mapk12 ENSRNOG00000031233 ENSRNOT00000044376 1 1 1 80 7 130111519 130111540 CAAGGCCCAGAAATATGATGAC 60 130109923 130111481 ACTTCCTTATACGTAACACGCT 60 NA Rattus norvegicus 81 Mapk12 ENSRNOG00000031233 ENSRNOT00000044376 2 1 1 80 7 130111929 130111950 AAGGAGATCATGAAAGTCACAG 58 130111800 130111889 CATGTAGTTCTTGGCCTCAG 58 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 2 3 3 87 2 200798231 200798249 CAATGAAGCACAACGTCCA 59 200798298 200806603 CTCAGAGCATCAATTGAAGCA 59 NA Rattus norvegicus 81 Rassf4 ENSRNOG00000013526 ENSRNOT00000018101 2 1 1 84 4 148788730 148791173 CATTCTAAAGTCAGAGCTCTTAAGC 60 148788670 148788688 CTCTCGGTGTCTTAGCTGG 60 NA Rattus norvegicus 81 P4ha1 ENSRNOG00000050655 ENSRNOT00000070897 2 1 1 80 20 28943594 28943612 GTTTCGTCTGCAAGACACC 60 28943653 28945287 AAAGACTTGTGTTTCACTCCTG 59 NA Rattus norvegicus 81 Olr894 ENSRNOG00000061448 ENSRNOT00000090661 2 1 1 60 7 5168685 5168705 GGAAGTCTCATTTACAAGCGT 59 5168645 5168665 ATTCCTGGTGACAATAGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539,ENSRNOT00000079975 3 3 3 67 4 164451264 164451282 CTGAGGAGACTCAAAGGCC 60 164449586 164449606 AATAGCAATCACAGTGAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Mir327 ENSRNOG00000059368 ENSRNOT00000084355 3 1 1 60 20 14110695 14110713 TGAGGGTAGTCAGTAGCCT 59 14110653 14110671 AAGCCATTCCAACATGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360611 ENSRNOG00000033115 ENSRNOT00000051772 1 1 1 60 11 82416082 82416103 TACATGCGAATCTACAAGAAGG 58 82416124 82416142 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Themis ENSRNOG00000014979 ENSRNOT00000020102 2 1 1 80 1 17337439 17337458 TGTGAGGGTGATATTGGAGG 59 17299905 17337399 CATGACCTTAAAGAGACCTGGA 60 NA Rattus norvegicus 81 LOC100911489 ENSRNOG00000048233 ENSRNOT00000070803 1 1 1 80 9 16139144 16139861 CAAGTGACTTCGGAGAGGA 59 16139901 16139923 CCCAAATATCTTCCACTGATGAG 59 NA Rattus norvegicus 81 Clec2g ENSRNOG00000059538 ENSRNOT00000090939 2 1 1 81 4 162941053 162941071 CATTCAGCCAGACCTTCTG 58 162941114 162941698 CTGCTTAAGAAATTCAGCTCC 57 NA Rattus norvegicus 81 Clec2g ENSRNOG00000059538 ENSRNOT00000090939 3 1 1 81 4 162941053 162941071 CATTCAGCCAGACCTTCTG 58 162941113 162941698 CTGCTTAAGAAATTCAGCTCCT 59 NA Rattus norvegicus 81 Edil3 ENSRNOG00000033064 ENSRNOT00000064991 3 1 1 80 2 17982818 17984546 CAATGAAGAAATGGTCTTCCG 58 17984588 17984606 TGAGCTTTGATTGGAGGTG 58 NA Rattus norvegicus 81 RGD1564942 ENSRNOG00000029141 ENSRNOT00000047522 2 1 1 80 5 133397147 133397165 ATGGGAAAGAGGGTCATGG 59 133397209 133410170 CAGAAAGTGACCTGCTCCA 60 NA Rattus norvegicus 81 Arv1 ENSRNOG00000018909 ENSRNOT00000025695 1 1 1 91 19 57484852 57484870 GTTGTATCGAGTGCAACCG 59 57484925 57487393 TTTCTGGCAGGATTTGCAG 59 NA Rattus norvegicus 81 Parp10 ENSRNOG00000004361 ENSRNOT00000006376 3 1 1 81 7 117297509 117297527 GGAGTTCCAAGATGTGGTG 58 117292438 117297465 ACGTTCTACTCGAACAATGC 59 NA Rattus norvegicus 81 Dnajb7 ENSRNOG00000019187 ENSRNOT00000025941 2 1 1 60 7 122643148 122643169 CTCAATATTCTCTTGTGGACGA 58 122643109 122643127 TCCTTCTTGTTGGTGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 2 2 2 81 5 146661879 146661900 CGATACCATCGTGTATTTCCAC 59 146661942 146667897 TTGGAGTTCGTAGGCTTGG 60 NA Rattus norvegicus 81 Rbmxl1 ENSRNOG00000012138 ENSRNOT00000016184 1 1 1 60 19 33084274 33084295 GATTACAGTCATTCCAGTTCCC 59 33084314 33084334 CATCTCTATCACCATAGCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 2 2 2 85 5 133872161 133875346 GGAGATAACGGATGGTCCC 59 133875394 133875413 CATTCACATTCTGCTGCCTC 60 NA Rattus norvegicus 81 Rimbp3 ENSRNOG00000030452 ENSRNOT00000051991 3 1 1 60 11 88037524 88037542 CGAGACTTCTGAATCCGAG 58 88037482 88037501 GGAGGTGTCTGGAATAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gypc ENSRNOG00000029939 ENSRNOT00000046369 1 1 1 82 18 25314266 25316763 ATCATTGCAGCTGTGATCAC 59 25314203 25314221 TTGTGCCTGTACAGGTAGC 60 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000079824,ENSRNOT00000088795 2 3 3 80 6 103418095 103470212 AAGCAGCAGAGAAAGACCT 59 103418033 103418055 CTCTTCAATGTTCTCAATCTGGG 60 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027593 2 2 3 92 10 15463701 15463876 ATGAAGATGTTGCAGGCAC 59 15463627 15463645 CATGTAGCTGATGAGGGCT 59 NA Rattus norvegicus 81 Shc3 ENSRNOG00000014366 ENSRNOT00000019442 2 1 1 81 17 13749246 13749264 GATGAGCATCTCCCTGACC 60 13749307 13753879 GTGATGGTTCGCTATGATCTG 59 NA Rattus norvegicus 81 Itpripl1 ENSRNOG00000012151 ENSRNOT00000016172 2 1 1 144 3 119618622 119619687 TAACTGAGACCATGCAGAGG 59 119618497 119618515 CATTCGTTTCTCCAGCTGC 60 NA InUTR Rattus norvegicus 81 Dnase2b ENSRNOG00000016262 ENSRNOT00000021861 1 1 1 80 2 252439115 252441680 CCAGTATGAGACAATAGATTCTCAG 59 252439059 252439077 CAGCGAAAGATGTTTGGGA 59 NA Rattus norvegicus 81 Hoga1 ENSRNOG00000029501 ENSRNOT00000049914 2 1 1 108 1 261307717 261308389 CACTACACCAAGGTTGCTG 59 261308461 261308479 GCTGAGACAATGTGACCAC 59 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 2 2 2 80 1 57726502 57726523 CCATTGCTACCTCATTAAACCA 59 57726558 57727344 CTACTACGGATTAAGTGTTGTAAGG 59 NA Rattus norvegicus 81 Gpr50 ENSRNOG00000011335 ENSRNOT00000015147 3 1 1 81 17 36771803 36771821 TCGTCGTAGACCTGATTGG 59 36771864 36774459 AAGATGTTGCCAGAATTTCGG 60 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 3 2 2 80 9 16486863 16487893 AGACCTGAGCAAAGTGGAC 60 16487935 16487955 TATTTGTTCAGCATAGCGTGG 59 NA Rattus norvegicus 81 Cfap20 ENSRNOG00000042179 ENSRNOT00000061392 2 1 1 80 19 10037099 10037120 AGTTCAACCTATCTGACTTCAC 58 10037161 10037897 AGTTTGCATGGATCTGCAC 59 NA Rattus norvegicus 81 Olr1077 ENSRNOG00000054107 ENSRNOT00000083574 2 1 1 60 7 13461008 13461028 CTGTCATCCACTGCATTACAC 59 13460968 13460988 AAGAACCAGAAATCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir1949 ENSRNOG00000044615 ENSRNOT00000069882 2 1 1 61 18 28353164 28353183 AATAGCTGGTTGGCATTCTG 59 28353201 28353225 CATCCTGGTATAGTTAACAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir1949 ENSRNOG00000044615 ENSRNOT00000069882 3 1 1 62 18 28353165 28353183 ATAGCTGGTTGGCATTCTG 58 28353203 28353227 GACATCCTGGTATAGTTAACAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr1a ENSRNOG00000009545 ENSRNOT00000013587 3 1 1 80 4 99874620 99874638 ATGACACTGAACACCTTCC 57 99874680 99875453 GAGAATCTCCCTCAATCTTGG 58 NA Rattus norvegicus 81 Tsga13 ENSRNOG00000011108 ENSRNOT00000015134 2 1 1 80 4 58208157 58213663 GATGAAGAGATGTATGACACGAC 59 58208099 58208122 CATATTTGGATGGACTGTGTAGTG 60 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151,ENSRNOT00000080340 2 2 2 84 5 147131572 147131592 CCTTGATGAAGGTGTTTATGG 57 147123389 147131526 AGATGGTTTCTTCTGCAGG 57 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 2 2 2 81 7 14239211 14239229 TCTCATCCTCTGAGTCGGA 59 14230518 14239166 GACTTGGGAGCCATCTCTG 60 NA Rattus norvegicus 81 Bloc1s5 ENSRNOG00000016497 ENSRNOT00000022108 3 1 1 80 17 26808504 26812364 CCTCATTATCAAGGATCTTGGAG 59 26812402 26812422 AAGTAACGGATTTCACCTTGG 59 NA Rattus norvegicus 81 Olr1104 ENSRNOG00000031284 ENSRNOT00000047272 3 1 1 60 7 139929356 139929376 AACTACAACTGTGAGCTTCCT 59 139929316 139929335 CGTTAGTGGAGACATCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0700.3 ENSRNOG00000014534 ENSRNOT00000019503 1 1 1 60 10 70329434 70329453 CCGTGTTTGTGATAGGTGTG 59 70329476 70329494 TTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lias ENSRNOG00000002759 ENSRNOT00000003779 2 1 1 80 14 44518414 44518432 TGTGGACCGAGATGATGTG 60 44516464 44518373 TTTGGATTCCTTTCCTTCAAGC 60 NA Rattus norvegicus 81 Tns2 ENSRNOG00000010588 ENSRNOT00000074212 1 1 1 80 7 143720200 143720221 CATCACTTTCTCTAGCACTGAC 59 143720360 143720471 ACGAAACCAAAGATCTTGGAG 59 NA Rattus norvegicus 81 Olr1564 ENSRNOG00000045930 ENSRNOT00000060869 3 1 1 60 11 43733989 43734011 CAATATTCTACACCTGCCTTCTC 59 43734028 43734049 ATGTCTTTACTACCATCTTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp367 ENSRNOG00000027234 ENSRNOT00000036287 1 1 1 83 17 1662978 1662996 GAGAAGAGCCAACAGACAC 58 1655387 1662931 TCTCCCAGTACTTTGCCAG 59 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 3 2 2 80 14 3251053 3251435 GATTCATCAGAGATCCCTGGG 60 3250993 3251013 GTGCACATAAGATCAACAGCA 59 NA Rattus norvegicus 81 AABR07066782.1 ENSRNOG00000050818 ENSRNOT00000073333 2 1 1 93 9 16094773 16094984 TGATTTCGAAGTCAGGAAAGC 59 16094700 16094718 CTCATTCCCAGGTGAGTGG 60 NA Rattus norvegicus 81 AABR07012658.1 ENSRNOG00000045536 ENSRNOT00000071087 1 1 1 84 2 201677878 201677898 GTCTTGCCTCACAAAGTAGTG 59 201677795 201677832 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 3 2 2 80 4 62280552 62280572 CAATATCAAGAGCATGTGGGA 58 62280612 62281674 CCAGCAGTTTCCTTATTTGGT 59 NA Rattus norvegicus 81 Elac2 ENSRNOG00000003424 ENSRNOT00000004722 1 1 1 80 10 51492562 51492582 CAAGATTCAGACTCAGCTCAG 59 51492623 51492722 GAACCTTCCTCCTTACTGTG 58 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140,ENSRNOT00000077898 2 2 2 80 2 203403904 203413030 CTCTTTCTCTGTCTAACTAAGCTC 59 203403847 203403866 ACCTTCGGTTCTGTACAGAG 59 NA Rattus norvegicus 81 Rpl8 ENSRNOG00000048456 ENSRNOT00000075451 1 1 1 80 7 118508936 118509103 TGTTGCCATGAATCCTGTG 59 118509146 118509165 TCTCTTCGGATAGTGGAAGG 58 NA Rattus norvegicus 81 Lrrc31 ENSRNOG00000027971 ENSRNOT00000033267 2 1 1 80 2 116325613 116325633 TTACTGAAGCATCTGGAAGTC 58 116325674 116330142 GACAATCTGAGTCAGTGACG 58 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083,ENSRNOT00000057872 1 2 2 80 20 27025102 27028498 GATGAATCGAATCCAGAAGCC 59 27028540 27028558 TGGGCTTGTACTGTTGGAG 60 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415,ENSRNOT00000079719,ENSRNOT00000082985 3 3 3 80 6 51271816 51274178 CTCTGGAGGTTTCTGAACG 58 51271754 51271773 GAGCAATGATCTGTTCTCCA 58 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 2 2 2 80 8 116443728 116443746 TGTTAGAGGAGGTGGAGGT 59 116442986 116443174 CATACAGTTGTTGCCTCTTGG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 2 3 3 80 5 134203933 134203952 TCTCCTTGATGACACTGGAC 59 134203506 134203893 ACCTGGAATTTACATCCAACTG 59 NA Rattus norvegicus 81 Tyms ENSRNOG00000037225 ENSRNOT00000056243 2 1 1 80 9 121929903 121929922 ATTTCCTCTGCTCACAACCA 60 121928442 121929863 TTTGTGGAGCCCTTAATAAACC 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 1 2 2 80 2 200617475 200619805 GATGTCAATGTGAAAGGTACTCAG 60 200617418 200617437 TGAGCTGCTGTAGATGAAGG 60 NA Rattus norvegicus 81 AABR07052692.1 ENSRNOG00000047487 ENSRNOT00000074765 3 1 1 80 3 69637204 69637262 TGCTTGGAGACAGTAAAGGA 59 69637143 69637161 GTGCCAGGATAAAGATGGC 59 NA Rattus norvegicus 81 Mir802 ENSRNOG00000040376 ENSRNOT00000062129 3 1 1 61 11 33570290 33570309 CCTTGTGTCGATCATACAGC 59 33570327 33570351 GGTGAAGGCTATTAATTACACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1346 ENSRNOG00000046219 ENSRNOT00000047487 3 1 1 60 9 99721050 99721072 CATGTACTTCTTCCTCAAGAACC 59 99721086 99721110 GACAATAACAGAAGAGTAACAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eqtn ENSRNOG00000026323 ENSRNOT00000029441 1 1 1 80 5 113871635 113871653 TGTGAGAGCCAATACTCCG 59 113871455 113871595 GACTGTTTGATTAGAGCCTTCTG 60 NA Rattus norvegicus 81 Acvr2a ENSRNOG00000005334 ENSRNOT00000007404 1 1 1 80 3 33030763 33031752 CAGAAACACGCAGGAATGG 60 33031795 33031814 AGCTGATAACCTGGCTTCTG 60 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 3 2 2 80 7 144316258 144316279 AGTTAGAGGATGACATCCAGAC 59 144314476 144316218 TCACCATGTCTCTAACCCTG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 1 1 18 71 1 43475843 43475862 GCCCTCTACTCTATCGTGTG 60 43475890 43527500 CTAGCTTACAATCACATACATGACC 60 NA DesignNoJunction Rattus norvegicus 81 Pp2d1 ENSRNOG00000004719 ENSRNOT00000006325 2 1 1 80 14 72958061 72958079 TTAACAGCTCTCCCTTCCA 58 72950483 72958017 CTGCTTGTACATTTCCAGC 57 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 3 2 2 80 1 18852782 18852803 ACTGATAGAAGTATCGCGTCTG 60 18852844 18859527 CCAACACGCTTCACAAGAG 60 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675,ENSRNOT00000083672 1 2 2 80 4 65139407 65139428 CTCACCAAAGAAGAAATGAAGG 58 65139469 65141698 ATGATCACTCCACATGAGC 57 NA Rattus norvegicus 81 Polh ENSRNOG00000019195 ENSRNOT00000026049 1 1 1 80 9 17166721 17167366 AAGGTGGTGGAATTATTGCAG 59 17167408 17167426 TCTTAGCATCATCAGCCCA 59 NA Rattus norvegicus 81 Tarsl2 ENSRNOG00000024460 ENSRNOT00000051000 2 1 1 80 1 126558876 126558894 TTTAACCGGCTTAACCCGA 59 126558938 126559230 GGCAACTTTAACTGCTCCA 58 NA Rattus norvegicus 81 Meox1 ENSRNOG00000020803 ENSRNOT00000028220 3 1 1 80 10 89799891 89816041 AAGGAGAGGTCAGACAACC 59 89799829 89799848 GAAAGCTGTCCTTTCCTTCC 59 NA Rattus norvegicus 81 LOC100910876 ENSRNOG00000060145 ENSRNOT00000089901 1 1 1 60 10 44471828 44471846 GACACCTTCCTCTTCACAG 58 44471786 44471805 TGATGTTTCCTATGAGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910876 ENSRNOG00000060145 ENSRNOT00000089901 3 1 1 60 10 44471826 44471845 ACACCTTCCTCTTCACAGTC 59 44471785 44471805 GTGATGTTTCCTATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam19a2 ENSRNOG00000004180 ENSRNOT00000005537 2 1 1 81 7 66056896 66058050 TGTGGATGCATCCATAGTG 57 66056833 66056853 TGGAAGGACTTTACATTCCTC 57 NA Rattus norvegicus 81 Ccnf ENSRNOG00000007483 ENSRNOT00000064392 3 1 1 80 10 13603154 13604619 TCTGTACCCGGTTCATCAG 59 13603092 13603115 CCTCGTATTTATACGTGTTGTCTG 60 NA Rattus norvegicus 81 Olr813 ENSRNOG00000005412 ENSRNOT00000007168 1 1 1 60 4 72503278 72503297 TGGTGATGTCCTATGATCGG 59 72503316 72503338 ATGATGACAGTATATCGGAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC302999 ENSRNOG00000020212 ENSRNOT00000027371 2 1 1 70 10 15310052 15310070 AAACTTGGCTGTCAGAGCA 60 15309722 15309740 ACTGGTTCCTTGTCCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Barx1 ENSRNOG00000016915 ENSRNOT00000022830 2 1 1 86 17 14826006 14826024 TGTATTCACTGAGCTGCAG 58 14825835 14825958 GCTAGATCTATTCTGTCTGGG 57 NA Rattus norvegicus 81 Ecscr ENSRNOG00000039593 ENSRNOT00000072580 2 1 1 80 18 28516100 28516119 CCTCAGTTTACTCCTGCTCC 60 28511358 28512498 GATGACTTCTGTAGAATTTCCTGAG 59 NA Rattus norvegicus 81 Tmem120b ENSRNOG00000048050 ENSRNOT00000074517 3 1 1 83 12 38907172 38907190 CTTCAACTTCCTGCTCGTG 59 38898245 38907125 CCCTTGATTCTGGAACCGT 60 NA Rattus norvegicus 81 Rgs1 ENSRNOG00000003895 ENSRNOT00000005251 3 1 1 94 13 61070015 61070033 TGGAATGGACATGAAAGCA 57 61069431 61069957 CCTCAGCCGAAAGTATGTC 58 NA Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161,ENSRNOT00000057061 2 2 2 81 5 134737112 134737131 TCATTGGTGTCTCTGTGTCC 60 134737175 134738136 AAGATGAGGAGCCCAAGTC 59 NA Rattus norvegicus 81 Aatf ENSRNOG00000002778 ENSRNOT00000000258 1 1 1 80 10 71770061 71770079 TGCTTAGCAAGCTCCTGAG 60 71744791 71770018 ATCGATACAACTCGGTCCTG 59 NA Rattus norvegicus 81 Irf2bp2 ENSRNOG00000049900 ENSRNOT00000075292 3 1 1 88 19 59500582 59501171 TCTAAAGCAGTTGCAAGGAC 59 59500513 59500532 GCCTCTCCATTGATCTTAGG 58 NA Rattus norvegicus 81 Bpifb6 ENSRNOG00000013371 ENSRNOT00000017876 1 1 1 80 3 149392548 149392567 ACATTGGACTGGAAATCCAC 58 149392609 149394114 ACAGGCTCAATAAACTGTCC 58 NA Rattus norvegicus 81 Bpifb6 ENSRNOG00000013371 ENSRNOT00000017876 2 1 1 80 3 149392607 149394112 CTGGACAGTTTATTGAGCCT 58 149394858 149394877 AGTGATGAAGCCAGTTAACG 58 NA Rattus norvegicus 81 LOC100911171 ENSRNOG00000025516 ENSRNOT00000042522 3 1 1 80 7 106631417 106631435 CTCAGTCTGGCATCAACTC 58 106631217 106631373 TCCCACTAGTTGTCTCTGG 58 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 3 2 2 80 11 86518525 86518543 CACGTGTACCAGTTTCCAG 59 86518587 86519144 AGCACTTTCCTTCAGTTCC 58 NA Rattus norvegicus 81 Rpl27a ENSRNOG00000014214 ENSRNOT00000019247 2 1 1 101 1 174134114 174134132 ATTATGGACGTTGGTCAGC 58 174134195 174135119 ACTTTGTAGTAGCCTGATCGA 59 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 2 2 2 80 5 6020357 6020378 AAGAATTTAAGGGAAGTGAGGG 58 6019873 6020319 GTTGTAATAGCTCTGCTTACCA 58 NA Rattus norvegicus 81 Cdkn1b ENSRNOG00000007249 ENSRNOT00000049848 1 1 1 87 4 168689971 168689989 CAAATGCCTGACTCGTCAG 59 168690040 168690588 AAGAAGAATCTTCTGCCGC 58 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 3 2 2 83 3 152631148 152631166 ATGGACTTGAGCTATGCCC 60 152631212 152635249 AAACTGGAGTTCACCAAGGA 59 NA Rattus norvegicus 81 Thumpd3 ENSRNOG00000006941 ENSRNOT00000009464 1 1 1 80 4 144996663 145000129 CTTTGACGTAGAGGTTCTCC 58 145000172 145000190 CGATGGAGACTCTCCTCTG 59 NA Rattus norvegicus 81 Thumpd3 ENSRNOG00000006941 ENSRNOT00000009464 3 1 1 80 4 145007947 145007965 CGTGTCTGTAGACCAAGGA 59 145008007 145008319 CATTCCAGATAATGCCTTGGT 59 NA Rattus norvegicus 81 Pura ENSRNOG00000019062 ENSRNOT00000025756 2 1 1 60 18 29110446 29110464 AACAAGCGTTTCTACCTGG 58 29110488 29110506 CAGCGATCTTCAGGAAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046713.1 ENSRNOG00000058962 ENSRNOT00000088143 1 1 1 81 5 2605402 2605509 GAAGGATGCTCTTCATGAATGTC 60 2605550 2605568 ATGAAGGCCATCCTCACTG 60 NA Rattus norvegicus 81 Ifna16l1 ENSRNOG00000033602 ENSRNOT00000040254 3 1 1 60 5 107447394 107447412 TCAAGCTATCCCTGTCCTG 59 107447352 107447372 CTTTGATGTGAAGAGGCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl4 ENSRNOG00000011406 ENSRNOT00000015199 2 1 1 80 10 70885233 70885254 GAAGATTCATCGGAACTTTGTG 58 70885294 70885991 TTGGTCAGAAATACCACAGC 58 NA Rattus norvegicus 81 Arl4a ENSRNOG00000004282 ENSRNOT00000005800 2 1 1 60 6 59949435 59949454 CGTCCTTTCAGTCCTTTCAC 59 59949394 59949412 ACTGTTGTCTTTCCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp352 ENSRNOG00000033600 ENSRNOT00000049470 3 1 1 60 5 110325686 110325705 AGCCTAGAACCTGAAGTGAC 59 110325645 110325665 CTGAAGATTCTCCGACATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1545 ENSRNOG00000055575 ENSRNOT00000081261 2 1 1 60 11 43432187 43432209 CTTCTATTCATGTATGTGCGTCC 60 43432226 43432247 AGTCCATCATATCCTGATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp28 ENSRNOG00000047940 ENSRNOT00000013836 1 1 1 80 10 70662533 70662965 CAGAACCTGTACGGAAAGC 59 70662471 70662489 CCAGGCTTCAAAGTCAGTG 59 NA Rattus norvegicus 81 Lpcat2b ENSRNOG00000055849 ENSRNOT00000080875 1 1 1 81 14 3357504 3357524 AGATACCGCAGACACTATGAC 60 3357440 3357466 CGGCGGATATAAAGACTTATTCAC 60 NA Rattus norvegicus 81 Efcab14 ENSRNOG00000010091 ENSRNOT00000013471 3 1 1 80 5 134616865 134616885 CCTGATAGAAAGTGATGTGGT 58 134616927 134618785 GCCCTATTACCCATCATGC 58 NA Rattus norvegicus 81 Lztr1 ENSRNOG00000001870 ENSRNOT00000002554 3 1 1 80 11 87395093 87395113 ATTGTAGAGATTGTTCGTCGG 58 87395155 87395832 CAAAGATGTGCCAATGTCC 57 NA Rattus norvegicus 81 Myg1 ENSRNOG00000013343 ENSRNOT00000017942 3 1 1 80 7 143936166 143936294 GATTCAAGGTAGACTCAAGTGG 59 143936334 143936353 CTAGGTGGTACAGATGCTCC 59 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000060403 3 1 2 80 17 22620666 22620815 GAGAGCAGAGCAGATTGGA 59 22620857 22620877 AGGAGTGTCAAGTACTTGGAC 60 NA Rattus norvegicus 81 Smpd5 ENSRNOG00000037299 ENSRNOT00000056421 3 1 1 109 7 117352655 117352676 CAAAGGTCTATTATCCGTCCAG 59 117352837 117353068 GAATATGTCCATCCTCAAGGG 58 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572,ENSRNOT00000089747 3 2 2 80 4 21483571 21483591 TGCAATGAAGATCCTAGATGG 58 21483633 21535279 TTTGGGTTGAATGGAGCTG 58 NA Rattus norvegicus 81 Agmo ENSRNOG00000023116 ENSRNOT00000032108 3 1 1 80 6 57047742 57048216 TTCCTTCTGGATCAAAGACCC 60 57048255 57048276 ACCAAATCTGTACAGGGTTAGG 60 NA Rattus norvegicus 81 Cux2 ENSRNOG00000001259 ENSRNOT00000001697 2 1 1 83 12 40201977 40201995 GAGCTGGAAGAGGTCTCAG 59 40202041 40202139 TTGGAGTTTCTCTATGGCCT 59 NA Rattus norvegicus 81 Nhlh2 ENSRNOG00000054375 ENSRNOT00000083374 1 1 1 83 2 204427715 204427733 CAGAAGGCGTTCACTTCTC 59 204427780 204428203 CACTCTTAGGGCTTGTGGT 59 NA InUTR Rattus norvegicus 81 Afg3l2 ENSRNOG00000017965 ENSRNOT00000024632 1 1 1 80 18 63169287 63171503 AGTTGATGGGCAATACGTC 58 63169225 63169244 AATTCTTGCTGCAAAGTCTC 57 NA Rattus norvegicus 81 Upk2 ENSRNOG00000043324 ENSRNOT00000016303 1 1 1 81 8 48773662 48773680 CCTACCGAGTACAGAAGGG 59 48773234 48773617 GACTCCATGTTTCTTCGGG 58 NA Rattus norvegicus 81 Sertad3 ENSRNOG00000037690 ENSRNOT00000057190 1 1 1 60 1 84280977 84280995 GTTTGTCGAAGGTAGTCGT 58 84283424 84283442 TTCCTCTTTAAGCCTCCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nags ENSRNOG00000020879 ENSRNOT00000028332 2 1 1 94 10 90088327 90089098 CAATCCTTGGTACTTCAAGCA 59 90089154 90089172 CATAGGAGTCCCGGATGTC 59 NA Rattus norvegicus 81 Nasp ENSRNOG00000016454 ENSRNOT00000022170 2 1 1 80 5 135459252 135459270 AACGGCTAATGAGTGTGGA 59 135457124 135459210 AACACTCCATTCTCCATTCTG 58 NA Rattus norvegicus 81 Sf3b6 ENSRNOG00000046172 ENSRNOT00000075790 2 1 1 82 6 29991545 29991568 ACCTATCAGGGACGTTGTG 59 29991373 29991392 CTTGGTGTCCATCTTCTGGA 60 NA Rattus norvegicus 81 Cspg5 ENSRNOG00000020833 ENSRNOT00000028278 2 1 1 80 8 118341343 118347428 ATTGTCTGTCAGGATGACCC 60 118347469 118347489 AAAGGACTCTTCCTCCTTCAG 59 NA Rattus norvegicus 81 Trim67 ENSRNOG00000019024 ENSRNOT00000032359 2 1 1 80 19 57580373 57581656 AAGCTGAAGATGGTTTGGGA 60 57581699 57581717 CAGGCAGTACTCCATCAGG 60 NA Rattus norvegicus 81 Pla2g7 ENSRNOG00000025691 ENSRNOT00000038222 3 1 1 80 9 19945823 19945843 GACATTGAACATGGAAACCCA 59 19944253 19945784 CTCATCGATAGAATCCTTCAGC 59 NA Rattus norvegicus 81 Rn60_1_1144.1 ENSRNOG00000028324 ENSRNOT00000030707 3 1 1 60 1 113346513 113346531 CCCACAGTATATGCCTGAG 57 113346471 113346490 TAAGGAGAGGTTGATGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1353 ENSRNOG00000046386 ENSRNOT00000056601 2 1 1 60 9 99796575 99796593 AGGAACAAGGACGTGAAGG 60 99796616 99796724 TTCTCACAAGGTTGTGTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Casq2 ENSRNOG00000016243 ENSRNOT00000021846 2 1 1 80 2 204554500 204563908 TGACCCAGATGGCTATGAG 59 204563952 204563970 AAGATGCTCAAGTCAGGGT 59 NA Rattus norvegicus 81 LOC297756 ENSRNOG00000007238 ENSRNOT00000009490 3 1 1 83 5 2799687 2803301 GCAGATGGCTACTGTTGTG 59 2799622 2799640 TGACATGAGGTTGACCTCC 59 NA Rattus norvegicus 81 Xpo5 ENSRNOG00000019085 ENSRNOT00000025921 2 1 1 80 9 17131471 17132375 CTATGCTTCGTGTCTTCGT 58 17131409 17131428 CAAGGATGGGAGATATCAGG 57 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 1 2 2 80 17 17828341 17836680 AGTTTGAACGAGAGGTCCA 59 17828279 17828298 CTGTGATATGGCACACTGTC 59 NA Rattus norvegicus 81 Grk1 ENSRNOG00000018430 ENSRNOT00000024999 2 1 1 80 16 81156379 81157705 GAGGTGACGTAAGGTACCA 59 81157748 81157767 CTGTGTAGTAGATGGCTCGT 59 NA Rattus norvegicus 81 Olr1546 ENSRNOG00000057507 ENSRNOT00000080384 2 1 1 60 11 43455059 43455080 TCATCATGACAAATAGGCTCTG 58 43455099 43455119 ATAAACCCACCTACCAAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1546 ENSRNOG00000057507 ENSRNOT00000080384 3 1 1 60 11 43455031 43455051 GCCATATGCAAACCTTTACTC 58 43455073 43455091 AAAGACGTACACAGAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde3b ENSRNOG00000011417 ENSRNOT00000015498 3 1 1 80 1 184008159 184010241 CTCATTACCAGAATTCTGGAGG 58 184010280 184010300 GAAGGTCTGACACCATATTGC 59 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 3 2 2 80 5 122683699 122683720 CGTTATGATTTCTTTGCTCAGC 59 122683759 122687651 ATCCATGTAATCCGTTACACC 58 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 3 2 2 88 4 170775858 170778823 AAGAAGTCAGGTCTGAGCG 59 170775788 170775806 TGAAGAGGAGTCAGCTCCT 60 NA Rattus norvegicus 81 Gpr162 ENSRNOG00000016143 ENSRNOT00000021670 2 1 1 102 4 157376157 157376452 TATTTACAGGTTCCTTTGTCCC 58 157376076 157376094 CAGACGATGACCACTTGTG 59 NA Rattus norvegicus 81 Plxna3 ENSRNOG00000060464 ENSRNOT00000083148 3 1 1 80 X 156376713 156376733 TACTTTCCCACCTTGAGTTCC 60 156376281 156376672 CTCATCCTGGTACACCAGAC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643,ENSRNOT00000078799 3 2 2 80 4 11308644 11308664 AGTTTCTACAGGTGAAGAGTG 57 11227277 11308603 AGACAATGACATCACCTGTC 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000085241 1 1 6 80 9 17341350 17341371 AAACCATGAACTTTCTGCTCTC 59 17341411 17353782 CTTGTCACATCTTGGCATGG 60 NA InUTR Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 1 3 3 90 3 22918930 22938764 TATGTCACCATGGGTTCTGG 60 22892718 22892736 GCTTCTTGGCTTCTTCCTC 59 NA Rattus norvegicus 81 Zscan18 ENSRNOG00000026861 ENSRNOT00000036880 1 1 1 80 1 65852192 65852211 CCCAGTATCCTGAGAATTGC 58 65852253 65852812 ACATCATTCCTGACTCCTCC 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 1 2 2 80 8 25880852 25889870 AACCAACTGATAACCAAGCTG 59 25880792 25880810 GATGTCAGTGAGCCTGGAG 60 NA Rattus norvegicus 81 LOC298795 ENSRNOG00000004188 ENSRNOT00000005553 2 1 1 60 6 23757458 23757476 AGAAGATCAACGAGGAGGG 59 23757499 23757518 TTCTCCCGGTACTCTTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb5 ENSRNOG00000011949 ENSRNOT00000016051 2 1 1 80 2 119150710 119153222 GCCGACTTACGGTTAAAGG 59 119153263 119153284 GGTTGGATATTGATACCAAGGT 58 NA Rattus norvegicus 81 Slc15a5 ENSRNOG00000007717 ENSRNOT00000010158 1 1 1 80 4 172063096 172063115 CTCTCGGATAGCAAGTACCT 58 172057213 172063053 TAACAAGGCAGTGCCTAGG 59 NA Rattus norvegicus 81 Zfp14 ENSRNOG00000047379 ENSRNOT00000075435 1 1 1 81 19 14490117 14493855 CTCACTGGATCTGGAGTCC 59 14493896 14493918 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Nutm2f ENSRNOG00000027311 ENSRNOT00000044543 1 1 1 80 17 15024245 15024627 TTTGTTGAGCAGGTAGAGG 57 15024183 15024201 CAGGATGTCCATTTCTGGT 57 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 2 2 2 84 1 79983400 79985157 TATTCAATGAAGAGCGGCTG 59 79985203 79985222 GAAGCAAGGAACAGACTCTC 58 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 3 2 2 85 1 79983401 79985157 ATTCAATGAAGAGCGGCTG 59 79985205 79985224 GAGAAGCAAGGAACAGACTC 58 NA Rattus norvegicus 81 RGD1565641 ENSRNOG00000038902 ENSRNOT00000059467 2 1 1 66 2 88350119 88350669 GAAAGAGCTGAAGCACCAC 59 88350699 88350717 CTGAGCCATTAGTCGTGTC 58 NA DesignRelaxed Rattus norvegicus 81 Cd207 ENSRNOG00000013222 ENSRNOT00000017691 1 1 1 81 4 115352530 115352548 AACACAAAGGTCCAGGGAC 60 115351511 115352488 TCATCTCCAGAATGTCACTCTG 60 NA Rattus norvegicus 81 Rufy1 ENSRNOG00000003536 ENSRNOT00000004740 1 1 1 80 10 35901891 35904509 AGCTTCAAGAAGAGCTTTCAG 59 35901831 35901852 CATTCTGTTCTCTTAGCTGCTG 60 NA Rattus norvegicus 81 RGD1562929 ENSRNOG00000050799 ENSRNOT00000056321 1 1 1 60 9 117867256 117867274 ACATCAAGCACCCAAACAG 59 117867214 117867233 TTCTGATCGTTCTCCTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsfy2 ENSRNOG00000038569 ENSRNOT00000058831 1 1 1 60 9 63290184 63290208 CCAGTTCATCTACTTATTCTGACTC 59 63290148 63290167 TTGTGTATTGGTAACTCGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc10 ENSRNOG00000018863 ENSRNOT00000025598 2 1 1 80 9 17046101 17046119 CTGCCTGTAGTCATCTGCA 60 17046163 17047208 TGTAAACACCTTGGTGGCA 60 NA Rattus norvegicus 81 RGD1306151 ENSRNOG00000008443 ENSRNOT00000068663 1 1 1 80 4 169005854 169005872 TCTGCAGATAGAAGAGCCC 59 169005914 169007046 ACTCCATCACTGTAAACATCG 58 NA Rattus norvegicus 81 Fam216a ENSRNOG00000031731 ENSRNOT00000050398 3 1 1 80 12 39687176 39688493 CTTGCTACCAGTTTCTTCTAAGG 59 39688530 39688551 ATGCACTCATTCAGTAGATCCT 59 NA Rattus norvegicus 81 Olr959 ENSRNOG00000059839 ENSRNOT00000050153 1 1 1 60 7 6970726 6970746 GTGTAGCTGTTCTCAATACCT 58 6970686 6970707 CTTAGGGTGTAAATGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366,ENSRNOT00000083587 2 2 2 80 1 116660502 116674189 GTGATTAGGGAGTTCTGGGA 59 116674232 116674250 TGTGCCTGTTGTAAACTGC 59 NA Rattus norvegicus 81 AABR07068417.1 ENSRNOG00000025797 ENSRNOT00000034533 3 1 1 81 9 104478428 104478931 GGCACAATATGAACATCATCCC 60 104478368 104478386 AGCTTCCTGTTCAGCTCTG 60 NA Rattus norvegicus 81 Nphs2 ENSRNOG00000004030 ENSRNOT00000005425 2 1 1 80 13 73929462 73931400 CAGAGGAAGGGATCAAGCC 60 73931440 73931462 TTACGATGATGAAGATCAGGGAG 60 NA Rattus norvegicus 81 Cpa6 ENSRNOG00000005655 ENSRNOT00000007491 1 1 1 80 5 8467512 8469678 CTCTTGATTATACAGCTGGGC 59 8469720 8469738 TTCTCTTGCATGAATGCCG 59 NA Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 1 2 2 83 17 31442648 31442667 AAGTTACCATGGAGACAGTG 57 31442710 31442965 CGAGGCACATATTTATTACCAG 57 NA Rattus norvegicus 81 Sycp1 ENSRNOG00000016835 ENSRNOT00000023333 3 1 1 80 2 205389123 205391232 AGAACAGAACAGCAAAGATTGG 60 205389064 205389085 TTCACTTGATTTCTTCTGGAGC 59 NA Rattus norvegicus 81 Dmrtc2 ENSRNOG00000020109 ENSRNOT00000027242 1 1 1 81 1 81737766 81737784 AAAGGAGAACATAGCACCC 57 81737829 81738058 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 Dear ENSRNOG00000033147 ENSRNOT00000042146 1 1 1 60 2 184246959 184246978 AATCCATACAGAAGACCACC 57 184247000 184247019 TTCATGTAGTTCCACTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 3 3 3 80 10 54229067 54229085 GCTGGAGATCAAGTTGAGC 59 54229129 54233072 AGATCATCTCCTGCCTGAG 58 NA Rattus norvegicus 81 Msgn1 ENSRNOG00000028518 ENSRNOT00000006482 2 1 1 60 6 36876302 36876320 CACCAAGATCCAGACACTC 58 36876260 36876278 GAGGAGGTCTGTGAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 3 2 2 81 10 87225551 87225903 GGAAACCAAAGCAAAGATTCC 58 87225490 87225509 TTAGAATCTTGCTGCGTTGG 59 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 2 2 2 80 5 153855812 153857453 ACAGAGTACAGAAAGGTTTCAC 58 153857493 153857512 CTGGGATTACTGACCTCCTG 59 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325,ENSRNOT00000076529 3 2 2 80 8 4637092 4651633 CGGAAGTCTAAAGTGGACC 58 4651677 4651695 ATTCACCGAGTGATTCCTG 57 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 1 2 2 80 2 205648805 205652617 CTTCCCATTGAAGAGGTGC 59 205653515 205653534 CATGATCTCATCCTCGTCAG 58 NA Rattus norvegicus 81 Nkx2-8 ENSRNOG00000022970 ENSRNOT00000011562 1 1 1 111 6 77508297 77508316 AATTTACCCGAACAGGATGC 59 77507579 77508223 CATCAGAGGACGGGTAGTG 59 NA Rattus norvegicus 81 Nkx2-8 ENSRNOG00000022970 ENSRNOT00000011562 3 1 1 115 6 77508297 77508316 AATTTACCCGAACAGGATGC 59 77507575 77508219 CTTTCATCAGAGGACGGGT 59 NA Rattus norvegicus 81 Atp5s ENSRNOG00000004893 ENSRNOT00000006509 2 1 1 81 6 92072663 92074841 TTGCGACACTTTAAGAACCTC 59 92074884 92074902 AGACTTCGGCAAGGTACTC 59 NA Rattus norvegicus 81 Sav1 ENSRNOG00000005264 ENSRNOT00000007314 1 1 1 91 6 92377380 92380193 CCCTGTGAAATACGACCAC 58 92377307 92377325 TCATGAAGAGCAGCTTCAG 58 NA Rattus norvegicus 81 Jam2 ENSRNOG00000042848 ENSRNOT00000046973 2 1 1 80 11 24266395 24266413 TTCCTCCAGACTAGAGTGG 57 24266457 24268548 TTAAAGTCGCCTTGGAGAG 57 NA Rattus norvegicus 81 Col5a3 ENSRNOG00000020525 ENSRNOT00000027897 1 1 1 80 8 21787575 21787921 CCGAGGGAAGAAGTTCTCC 60 21787513 21787533 CTCAACAACTTCAGGAAGGTC 59 NA Rattus norvegicus 81 Sept2 ENSRNOG00000017952 ENSRNOT00000024261 3 1 1 80 9 100648273 100649047 ACTAGACTCCTCAAAGCCAG 59 100649089 100649108 TCTAACCTTCTTGCCCTTGG 60 NA Rattus norvegicus 81 Ptpn22 ENSRNOG00000019614 ENSRNOT00000026556 1 1 1 80 2 206375893 206380849 CCAAATCAGATCAACATCAGG 57 206380891 206380909 CGTCAGCAAGAAAGAAGGA 58 NA Rattus norvegicus 81 Folr2 ENSRNOG00000019890 ENSRNOT00000026925 3 1 1 82 1 166919194 166919212 TCAACGTTTGCATGGATGC 60 166916037 166919149 CTTCCATGGACTACACTGGT 59 NA Rattus norvegicus 81 Cfd ENSRNOG00000033564 ENSRNOT00000015029 2 1 1 80 7 12635138 12635246 ATGGATGGAGTGACCAAGG 59 12635076 12635095 ATGCTTGTAGGGTTCAGGAC 60 NA Rattus norvegicus 81 Akap6 ENSRNOG00000004841 ENSRNOT00000006562 1 1 1 80 6 73868882 73905451 AGCATCTTTACAAGAGGTACAG 58 73905492 73905510 AAGCTTCAACCTTGCTGAG 58 NA Rattus norvegicus 81 Ccer1 ENSRNOG00000004875 ENSRNOT00000006455 3 1 1 60 7 38947033 38947051 GGTTGGTAGAGGAAGAGGA 58 38947075 38947093 TCACAAACCTCTTCGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1072 ENSRNOG00000008460 ENSRNOT00000011176 2 1 1 60 7 9630081 9630102 CCAAATCAGTGTAACATTCTCC 58 9630042 9630062 GTAGAAGTGATCAATGACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxc2 ENSRNOG00000047446 ENSRNOT00000072369 2 1 1 63 19 53045415 53045434 AAGAAAGTGGTGGTCAAGAG 58 53045460 53045478 TCTCCACCTTGGTGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 1 2 2 81 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309176 42309194 CTTGTGGAGGAAGGGAAGG 60 NA Rattus norvegicus 81 Baz1a ENSRNOG00000006828 ENSRNOT00000009080 2 1 1 80 6 75829441 75830087 ACGACCTTAAGGAACTTCCA 59 75829380 75829398 AAACCATCAGAGCATCACC 58 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 2 3 3 80 8 111078413 111079535 TAAGCACTCAGTAGAAAGGTCTC 60 111078355 111078373 TTATCCAAGACTCCCTGCC 59 NA Rattus norvegicus 81 Pycard ENSRNOG00000019675 ENSRNOT00000026699 3 1 1 85 1 199438845 199438863 AGCTCACAATGACTGTGCT 60 199438548 199438796 CACAGCTCCAGACTCTTCC 60 NA Rattus norvegicus 81 LOC100912707 ENSRNOG00000049299 ENSRNOT00000040386 1 1 1 60 3 16413120 16413139 GGGTCTTCATATTCCTGCTG 58 16413346 16413364 TGAGTCATCACAATGTCCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100911926 ENSRNOG00000047388 ENSRNOT00000070942 2 1 1 80 10 111733242 111733261 ATCAGAAACAAACAGCCGAC 59 111733301 111734485 GCTCCATATCTGTATCATTGGC 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076780,ENSRNOT00000015084 2 2 3 80 1 136673095 136675744 TACCTTCTACAACACAGACCT 58 136673035 136673053 TCCTTCTGCTCCAGAAAGG 59 NA Rattus norvegicus 81 Pkd2 ENSRNOG00000002146 ENSRNOT00000002916 1 1 1 80 14 6627996 6628017 TTGGAAATTCGGATTCACAGAC 59 6622483 6627957 TACGGACAACACAACAATCAC 59 NA Rattus norvegicus 81 Sox11 ENSRNOG00000030034 ENSRNOT00000045963 3 1 1 61 6 46631389 46631407 GAGAAGATCCCGTTCATCC 57 46631346 46631364 GGATAATCAGCCATGTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_16_0001.1 ENSRNOG00000046720 ENSRNOT00000075622 3 1 1 101 16 141128 141147 CGGTGTCTGGTATATGAGTC 57 141015 141066 TTTGGTAAGATCTTCTCCCAC 57 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 1 2 2 80 8 56465776 56466910 TGTTTACAGGGAATGCATCAG 59 56466949 56466970 TCTTAACTAGATCTGCTCCTCC 59 NA Rattus norvegicus 81 RGD1563405 ENSRNOG00000009002 ENSRNOT00000011900 3 1 1 60 5 17399448 17399466 GGCACTTGCTTTGATCGAG 60 17399406 17399425 CTGCCGGATTAAGTGAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Miox ENSRNOG00000008694 ENSRNOT00000011941 1 1 1 80 7 130310444 130310462 ACAGAACTTGGCATGTACC 58 130310503 130310620 CTGGTATAGGTACTCATCATGG 57 NA Rattus norvegicus 81 Rn60_20_0064.7 ENSRNOG00000052710 ENSRNOT00000089737 2 1 1 60 20 4245527 4245546 ATGAGTGTGGAGAACATGGA 59 4245486 4245506 ATACTGCTTGTGAGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gfer ENSRNOG00000013370 ENSRNOT00000017917 3 1 1 86 10 14060047 14060825 AGGAAGAGGATAGACAGGAG 57 14059980 14059999 GTTCACTTCATTGTGAAGGC 58 NA Rattus norvegicus 81 Fgfrl1 ENSRNOG00000024207 ENSRNOT00000000037 2 1 1 87 14 2021990 2022009 GAAGACAGTGGCAAGTACAC 59 2021843 2021941 GAGTACGCTGGATTACATCC 58 NA Rattus norvegicus 81 Colca2 ENSRNOG00000042165 ENSRNOT00000065744 2 1 1 81 8 55675209 55676654 TAACCTGCATCTGATGCCA 59 55675146 55675164 CTGAGCTGGTGAGTAGCTG 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 3 2 6 93 12 41264266 41264284 CTCTGAGCTTCAAGCTGAG 58 41262300 41264210 GGGATACAAACATGACCCAG 58 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649,ENSRNOT00000080090 2 2 2 117 6 147930251 147933709 GTCAGGACTTGTCATGATCCT 60 147933788 147933806 CAGTGGGTACAGGGATGAG 59 NA Rattus norvegicus 81 RGD1563045 ENSRNOG00000029130 ENSRNOT00000047511 2 1 1 60 7 79139606 79139624 GACAGATATGGCGAGATCC 57 79139648 79139666 CCACAGACTTAGGACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563045 ENSRNOG00000029130 ENSRNOT00000047511 3 1 1 60 7 79139538 79139557 CGAAGGTTAACTCGGAAGAC 58 79139579 79139598 TTGGTCCTAATAGCTTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin3a ENSRNOG00000005723 ENSRNOT00000007957 1 1 1 80 5 64929518 64933968 TGTGGAGAAGAGCAGATGG 59 64929456 64929475 AGGTTGGACCTAGGAAACAG 59 NA Rattus norvegicus 81 Grin3a ENSRNOG00000005723 ENSRNOT00000007957 3 1 1 80 5 64970991 64987383 CATCGAAGGATATGGCATTGG 59 64970931 64970951 GACTTGTACTGACTGATGAGC 59 NA Rattus norvegicus 81 Cd2ap ENSRNOG00000011987 ENSRNOT00000016291 1 1 1 80 9 20829369 20831246 TAAGTAAGGAGACTGGAGAAGC 59 20831284 20831305 CAGCAAAGTTATCTGGAAACAC 58 NA Rattus norvegicus 81 Fktn ENSRNOG00000028129 ENSRNOT00000036799 1 1 1 80 5 70547386 70547409 TTTCTAGAAGAAGTACCTCACTCC 60 70547448 70552385 ATCGACGTACTGCTGAAGG 60 NA Rattus norvegicus 81 Tfap2d ENSRNOG00000011642 ENSRNOT00000065053 1 1 1 80 9 25310028 25320648 TGTGATAAGAAGAGGTGGCA 59 25320691 25320709 CTGAGAAGGGACAAACGAC 58 NA Rattus norvegicus 81 Tfap2d ENSRNOG00000011642 ENSRNOT00000065053 3 1 1 80 9 25310030 25320650 TGATAAGAAGAGGTGGCACC 60 25320692 25320711 AACTGAGAAGGGACAAACGA 59 NA Rattus norvegicus 81 Spin2a ENSRNOG00000031286 ENSRNOT00000052281 2 1 1 121 X 17963951 17964612 GTGAGCAGGTATGAAGACC 58 17963848 17963866 TTTGCCTCTTCTGAGAAGC 58 NA InUTR Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 1 2 2 80 16 84713281 84713586 GCAACTCACGAAATCTCTGG 59 84713220 84713238 TTAGGCTTGACGCAAAGGA 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659,ENSRNOT00000046622 2 2 4 105 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353600 167353618 TGCTCTTGAACATTCCCTG 58 NA Rattus norvegicus 81 LOC100911479 ENSRNOG00000045886 ENSRNOT00000072282 3 1 1 60 10 44958615 44958633 CACCTTCCTCTTCACAGTC 58 44958656 44958675 TGTGATGTTGCCTATGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754,ENSRNOT00000067104 3 2 2 80 9 17741229 17741343 GGCCTACAAGATGTTTACTACAG 59 17741383 17741401 ATTCCACTCAATCCTGCCC 60 NA Rattus norvegicus 81 LOC497940 ENSRNOG00000015975 ENSRNOT00000021402 3 1 1 80 10 56508619 56509659 ACACCAATGATTCTGCTACC 58 56508558 56508577 GTTGTAAAGTAGCCAGCTCC 59 NA Rattus norvegicus 81 Praf2 ENSRNOG00000057147 ENSRNOT00000085397 1 1 1 61 X 15620708 15620727 AACAACCTCCTCTACTACCA 57 15619644 15619662 CAGGAACAAGAGCACTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Gfpt2 ENSRNOG00000002810 ENSRNOT00000003770 1 1 1 80 10 35313653 35313676 GAAGATCGAATTTCTCTACAGACC 59 35313712 35316422 TACTTCTTTGATCAGCTCAGGT 59 NA Rattus norvegicus 81 Zfp347 ENSRNOG00000031216 ENSRNOT00000044241 1 1 1 60 7 9975542 9975563 CCCTATGAATGTAGTCAGTGTG 58 9975503 9975524 CATGTGTTTGAAGATTACTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F13a1 ENSRNOG00000015957 ENSRNOT00000021568 3 1 1 80 17 28583746 28583765 GACAAAGCTGAGATGGACCT 60 28583808 28605925 CTTGGCATTCACCATTGCT 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854,ENSRNOT00000044081 2 2 2 80 11 24492032 24492440 CCGTTATCCAGCATTTCCA 58 24491970 24491988 GTGTCTCTACAAGCTGCTG 58 NA Rattus norvegicus 81 Tymp ENSRNOG00000032394 ENSRNOT00000040541 3 1 1 80 7 130345781 130345800 TTCCTGCTGATGGAATCCTG 60 130345616 130345739 GGATTGACGCTGTAATGAGC 60 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839,ENSRNOT00000046849,ENSRNOT00000045165,ENSRNOT00000025536 1 4 4 80 1 140140458 140140925 GCTCTCACTGTCTACTACCC 59 140140397 140140418 CACAAACTCAATGCAATGTTCC 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 1 1 1 60 8 109456213 109456231 CTCTTGCCTTACTTCCGAC 58 109456255 109476813 GATCTTGAAGCAAATGCCC 57 NA DesignNoJunction Rattus norvegicus 81 Mir1249 ENSRNOG00000041492 ENSRNOT00000063245 1 1 1 64 7 125861244 125861262 CAAGTTCCCTATGCCTGGA 59 125861198 125861216 AAGGACGAGTAGGAGTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csde1 ENSRNOG00000061058 ENSRNOT00000091210 1 1 1 80 2 205547002 205547021 GGTTGAATACAGCTTGTCCA 58 205547064 205547520 ATGCCATTCACTGAGTGAG 58 NA Rattus norvegicus 81 Csde1 ENSRNOG00000061058 ENSRNOT00000091210 2 1 1 80 2 205542836 205542855 CCACTTCAGTGAGATTCTCG 58 205542898 205543005 GAGAGCATATCAGGGACCA 58 NA Rattus norvegicus 81 Irs1 ENSRNOG00000014597 ENSRNOT00000019579 3 1 1 81 9 88082221 88082240 CAGCATCAACTTCCAGAAGC 60 88034692 88082182 GAGGTCATTTAGGTCTTCATTCTG 59 NA InUTR Rattus norvegicus 81 Bmp15 ENSRNOG00000002984 ENSRNOT00000003989 2 1 1 81 X 17017388 17021029 GCTTCTCAGAGGTCCTTGG 60 17021072 17021092 GGCTCTGATTAGTTGGTATGC 59 NA Rattus norvegicus 81 Nostrin ENSRNOG00000006611 ENSRNOT00000067161 1 1 1 80 3 55417541 55417561 AGGCTCTAATGGAAGAAACTG 58 55417600 55422977 GATCTTCTTCAAAGTAGTCAGC 57 NA Rattus norvegicus 81 Ghsr ENSRNOG00000024119 ENSRNOT00000034960 3 1 1 116 2 113067664 113069709 GAAGATGCTTGCTGTGGTG 60 113069789 113069807 CTGATCTGAGCGATCTCCA 59 NA Rattus norvegicus 81 Prpsap1 ENSRNOG00000010083 ENSRNOT00000013573 2 1 1 80 10 105438673 105446584 ATACCCAGAGATGTGAATACGG 60 105438614 105438632 GATATTCCTGGCACAGGCA 60 NA Rattus norvegicus 81 Prpsap1 ENSRNOG00000010083 ENSRNOT00000013573 3 1 1 81 10 105438559 105438577 AGCAAGATGAGGAAGAGGG 59 105437488 105438517 TGATAATGTGAGTTAGACCAGC 58 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029,ENSRNOT00000074720 2 2 2 80 1 83049242 83049327 TCTGAATGGGTCTCTAGGC 58 83049371 83049389 TGGATCACTATGGAAGGCA 58 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 1 2 2 80 4 34671774 34674302 CTAGCAACATATCAGACCACTC 59 34671715 34671734 TTTGAAGCTCTCATGGATGG 58 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578,ENSRNOT00000026466 2 2 2 86 1 199353300 199353394 CTTCCCTCCGATCAAGGAC 60 199353443 199353462 GTTACCACATCCTTGTGGTC 59 NA Rattus norvegicus 81 Mpv17 ENSRNOG00000049430 ENSRNOT00000034207 3 1 1 85 6 26595936 26596169 AAACTGAAGCGGGACTACC 60 26596433 26596451 GGGACCAGGTAGAAGTTGG 59 NA Rattus norvegicus 81 Try10 ENSRNOG00000050119 ENSRNOT00000048049 3 1 1 90 4 70656285 70656736 CTTCGGTGTCAATGAACCAG 59 70656214 70656233 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Fam120a ENSRNOG00000016779 ENSRNOT00000060568 3 1 1 80 17 16177884 16183193 GGAACTCAAGATTGAGAACTTAGAC 60 16183230 16183249 AACAGTGCCATGTCTACTCC 60 NA Rattus norvegicus 81 Adamts5 ENSRNOG00000057794 ENSRNOT00000085444 3 1 1 81 11 25433021 25442634 ACGAAATTGGACATCTACTTGG 59 25432961 25432980 CGCTTGTCTTCTGTAGAACC 59 NA Rattus norvegicus 81 Pld2 ENSRNOG00000019604 ENSRNOT00000056998 2 1 1 80 10 57177703 57179191 TGTTTCAGTGTCATTCTTGGG 59 57179232 57179251 CAGCTGGAAGAAGTCATCAC 59 NA Rattus norvegicus 81 Rassf3 ENSRNOG00000005388 ENSRNOT00000007295 3 1 1 81 7 63516509 63518761 CACGAAATTGGAGAGTGGG 59 63516446 63516464 GTTCGTCCTCTTCCTTGTC 58 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 2 2 2 83 9 19452868 19454541 TTAGGTGACCATGGCTATGAC 60 19454586 19454604 GTAGCCTTTCCTGAAGGCA 60 NA DesignNoJunction Rattus norvegicus 81 RGD1359508 ENSRNOG00000038330 ENSRNOT00000058366 2 1 1 98 2 128681375 128681393 GATGGAGGTTAGTGCTCCA 59 128681452 128683325 GCTTCCACAACTTCATAATTCC 58 NA Rattus norvegicus 81 Dmap1 ENSRNOG00000019407 ENSRNOT00000026336 3 1 1 80 5 136535832 136540402 GGTTCAATAAGACAGTACAGGT 58 136535773 136535792 CCTTAGTCCATGCATCATCG 59 NA Rattus norvegicus 81 Tmem145 ENSRNOG00000020489 ENSRNOT00000027783 3 1 1 80 1 82177219 82177239 AAGTTGTCTGTGTACATGACC 58 82177280 82177887 GCCTGGGTCAAAGAATTCTG 59 NA Rattus norvegicus 81 Gpa33 ENSRNOG00000003740 ENSRNOT00000004986 3 1 1 80 13 84354999 84359643 GCCTCTTAGTCCTCGTACC 59 84359686 84359705 TCAGTTGGATGTTGTTCCCA 60 NA Rattus norvegicus 81 Olr1384 ENSRNOG00000047001 ENSRNOT00000071365 2 1 1 60 10 34332706 34332727 ATTTGAGAAGGTAGGGTTTGTC 58 34332667 34332687 AATGATGGAGAAGGGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptn ENSRNOG00000011946 ENSRNOT00000016088 1 1 1 81 4 64269087 64269107 GTGCAAACAAACCATGAAGAC 59 64266079 64269045 CTGGTATTTGCACTCAGCTC 59 NA Rattus norvegicus 81 Hectd3 ENSRNOG00000018363 ENSRNOT00000024737 2 1 1 80 5 135862679 135862700 TCTGTGTATTAGAGGACATGAC 57 135862739 135863163 CATCTATCCCATCATCTCGAC 58 NA Rattus norvegicus 81 Camta2 ENSRNOG00000004283 ENSRNOT00000056622 2 1 1 80 10 57292112 57292130 TTTCTCACGAAGAAGCAGG 58 57291959 57292069 CAGTTCCCTCATTCTGTGTC 58 NA Rattus norvegicus 81 Rpl30 ENSRNOG00000005975 ENSRNOT00000057587 3 1 1 80 7 73215888 73215909 CAGACTCTGAAGATGATCAGAC 58 73214556 73215849 TTCAGATTTCCTCAAAGCTGG 59 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 3 2 2 80 9 94229385 94229406 GGAAGGTAATCTAGGACCTGAG 59 94229446 94229611 TCCACACTGTATGTCTTGGA 58 NA Rattus norvegicus 81 Samd4b ENSRNOG00000019831 ENSRNOT00000026839 3 1 1 81 1 85355890 85356281 CTGACTCATGAGGCTTTCAC 59 85356325 85356343 ATGTCCGGAGGAGTTTCAG 59 NA Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 1 2 2 80 8 76534221 76537244 ACGCAGAAGGACAGATCTC 59 76534159 76534179 GGGACATCTTCAGTTTAGTGC 59 NA Rattus norvegicus 81 Trpv6 ENSRNOG00000014714 ENSRNOT00000020616 3 1 1 80 4 70924736 70924758 GTAGTGAGGAGATTGTTAGACTG 58 70924334 70924700 GTAGTACTGTATTTCCCAAGGAG 58 NA Rattus norvegicus 81 AABR07033357.1 ENSRNOG00000047243 ENSRNOT00000072550 2 1 1 91 11 18454192 18454225 AACATCAATGTCTTGGCCG 59 18454280 18454298 TTGGTGAGGTCGATGTCTG 59 NA Rattus norvegicus 81 Kif13a ENSRNOG00000001455 ENSRNOT00000066447 3 1 1 80 17 18297562 18302386 TGGACAGTTACCAGGAGGA 60 18302424 18302448 CTAAGTATTCCCGTCGTTTAATGAG 60 NA Rattus norvegicus 81 Myl2 ENSRNOG00000030848 ENSRNOT00000050368 2 1 1 83 12 39957151 39957170 AGAATGACCTAAGGGACACG 59 39954982 39955004 CTGGAGCCTCGATCATCTC 60 NA Rattus norvegicus 81 LOC680112 ENSRNOG00000025618 ENSRNOT00000031984 1 1 1 80 4 70977781 70978363 TTCTAAAGACCAGGGTGAGC 60 70978405 70978424 ATATCTACCACCTGCCACAG 59 NA Rattus norvegicus 81 LOC680112 ENSRNOG00000025618 ENSRNOT00000031984 3 1 1 81 4 70977717 70977735 GGGTGAAGACTCTGAAGGG 59 70977778 70978361 TCACCCTGGTCTTTAGAAGAC 59 NA Rattus norvegicus 81 LOC685881 ENSRNOG00000051000 ENSRNOT00000074294 1 1 1 60 6 24563044 24563062 CTTTCAGTGACCTGAACCG 59 24563002 24563020 TTCCCAAGATGCCATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam169b ENSRNOG00000022822 ENSRNOT00000040147 1 1 1 80 1 129278834 129278852 CACTGTACCGTGATGAACC 58 129278895 129297203 AGTAAACAGCCACAACTGTC 59 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481,ENSRNOT00000045373 1 2 2 80 5 5280788 5282050 CTGCAACAGAAGAACAAGC 58 5282093 5282112 TGTAGAAGAACACTGTAGCC 57 NA Rattus norvegicus 81 Vom2r56 ENSRNOG00000039136 ENSRNOT00000049266 1 1 1 80 7 19077763 19078176 TAGATGCATGCAGGTAAATGAC 59 19077704 19077724 CCTTGATTAACAGTCACTGGG 59 NA Rattus norvegicus 81 LOC501110 ENSRNOG00000033402 ENSRNOT00000036813 1 1 1 80 9 27499831 27499850 TTTCATTATGATGAGGCCCG 58 27494755 27499792 CTTCTCTTCATACTCTACTCCAG 57 NA Rattus norvegicus 81 Zfp169 ENSRNOG00000017092 ENSRNOT00000022932 2 1 1 80 17 16460530 16468716 CTCTGTTCAGAACCCAGGA 59 16468760 16468778 CACTCTGAGGACTTCTGGA 58 NA Rattus norvegicus 81 AABR07055309.1 ENSRNOG00000046498 ENSRNOT00000051488 2 1 1 89 7 1392430 1392451 AGAAGTGTAAATCTGAGAGGGA 58 1390565 1392381 GCAATTCAACATTCAGCCTG 58 NA Rattus norvegicus 81 AABR07055309.1 ENSRNOG00000046498 ENSRNOT00000051488 3 1 1 90 7 1392431 1392452 CAGAAGTGTAAATCTGAGAGGG 58 1390565 1392381 GCAATTCAACATTCAGCCTG 58 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 2 2 2 81 9 92892618 92893238 TGTTCAAGGTGTTTGTGGC 59 92893283 92893301 TCGATGAGTTTGGTCTGGT 59 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 1 2 2 80 3 46711075 46721470 CAACCCTTGCAGTAGTATCC 58 46711014 46711033 TCAGCATCATCAGTCAATGG 58 NA Rattus norvegicus 81 Paxbp1 ENSRNOG00000002036 ENSRNOT00000002800 1 1 1 80 11 31204497 31205367 CATCCCTCAGGTTCAAGCA 60 31204435 31204454 GCACCATAAGGCATTGTCTG 60 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000079249 2 1 3 97 1 66253718 66253737 CTGAGGAGAGCAGAAGACAG 60 66253637 66253658 AAACCTTGGAACGTGACCT 60 NA Rattus norvegicus 81 Eral1 ENSRNOG00000010673 ENSRNOT00000014386 3 1 1 80 10 65275572 65275591 GTCTCAAAGAAGGTGCACAC 60 65275634 65277141 GTCAAGCAGAATCACCTGG 59 NA Rattus norvegicus 81 Uba3 ENSRNOG00000006221 ENSRNOT00000008893 3 1 1 80 4 129555405 129555699 GGATCAATGGAATGCTGATATCTC 60 129555348 129555370 CATCTATCAAAGGTACGATGGAG 59 NA Rattus norvegicus 81 Col9a1 ENSRNOG00000012920 ENSRNOT00000018116 1 1 1 80 9 30421031 30427700 TCCAACAAGGCATTTGTATCC 59 30427742 30427760 AGTGTGCTTCCAGTCATCC 60 NA Rattus norvegicus 81 Plekhs1 ENSRNOG00000016926 ENSRNOT00000022724 2 1 1 80 1 277283020 277283039 CCAGACCAAGGTTTCAAGAG 59 277283078 277284294 GGTTGCTTCTTTAACTAGACAGG 60 NA Rattus norvegicus 81 LOC102551105 ENSRNOG00000040057 ENSRNOT00000061598 3 1 1 81 11 29056158 29056177 CTACTACGGCAGCTACTACG 60 29056219 29056278 ATAGTTACCATAGCCACAGCC 60 NA Rattus norvegicus 81 Cyp19a1 ENSRNOG00000000196 ENSRNOT00000000212 1 1 1 80 8 58752747 58752767 CAAGCACTCCTTATCAAACCA 59 58752143 58752705 CAAGTCCTTGACGGATCTC 58 NA Rattus norvegicus 81 Hmg1l1 ENSRNOG00000051482 ENSRNOT00000086591 1 1 1 60 19 59985272 59985293 GATGCTTCTGTCAACTTCTCAG 59 59985233 59985251 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 2 5 5 80 4 176268639 176268658 TGGCCTAGCATACATGTCAG 60 176266478 176268599 CAATTGTGAAACACCATGTTGG 59 NA Rattus norvegicus 81 Zc3h8 ENSRNOG00000017647 ENSRNOT00000023845 3 1 1 81 3 121485528 121485546 GTTGAAGAGGCACAGACAG 59 121480329 121485485 CAAGGTGCTTAAACTTCTTGG 58 NA Rattus norvegicus 81 AC103514.1 ENSRNOG00000048555 ENSRNOT00000074959 1 1 1 60 10 5183853 5183871 AGGTGGCTCAAGATACCTG 59 5183894 5183913 TGTAGGGAATAGTCCCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065778.3 ENSRNOG00000048159 ENSRNOT00000073446 2 1 1 90 6 141062409 141062537 AGATGTCCAGTGTGAAGTACAG 60 141062340 141062358 CCCTGAGGCTACACAAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rab31 ENSRNOG00000042189 ENSRNOT00000067974 1 1 1 80 9 113416626 113416644 CTGGCTCCCATGTATTACC 57 113414926 113416585 CAAGGTATGAAATGAATCCTGC 58 NA Rattus norvegicus 81 Cyp4f39 ENSRNOG00000029478 ENSRNOT00000007548 3 1 1 80 7 14512772 14512792 GAATTATCTGCTTGGTCAGCA 59 14512828 14513401 GGTAGGGATTGTATACCTTAGAGTC 60 NA Rattus norvegicus 81 Pus7l ENSRNOG00000022570 ENSRNOT00000029097 1 1 1 82 7 135795543 135799544 GTGTATACAGCTTTCACCCT 57 135795480 135795498 ATAACGCCAAGTTGGATGG 58 NA Rattus norvegicus 81 Timm23b ENSRNOG00000031285 ENSRNOT00000048004 3 1 1 60 6 75244603 75244623 GCTTCGTTTAGGATTGAAGGA 59 75244563 75244584 CTGTACATTTCTTGGTTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bccip ENSRNOG00000018066 ENSRNOT00000024355 2 1 1 80 1 205777589 205777607 GAGGATGAGGAAGAAGACG 57 205777651 205782879 ATTCACTTCCTCATCCACG 57 NA Rattus norvegicus 81 Ptgfr ENSRNOG00000046468 ENSRNOT00000071195 2 1 1 109 2 257007894 257036264 GGAGTCCCTTTCTGGTGAC 60 257007803 257007821 TATCTGGTTCCAGGTTGCC 59 NA Rattus norvegicus 81 Cep57 ENSRNOG00000006792 ENSRNOT00000009318 2 1 1 80 8 12337579 12337599 GGCATTAGTGAGAAGAATGGA 58 12336497 12337537 CTTTGTTTCTCCAGCTGGG 59 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933,ENSRNOT00000031855 1 2 2 80 5 155980850 155981156 TGAGCCTAATCTCTGTCCA 57 155981200 155981218 GTGGCTTGGGTATACTCTC 57 NA Rattus norvegicus 81 Tmem14a ENSRNOG00000013238 ENSRNOT00000037489 2 1 1 80 9 27349477 27350053 TCAAAGTGTCACTGTTTACAGC 60 27350092 27350112 CAGGCATTACTTTCTTGGACC 59 NA Rattus norvegicus 81 Rybp ENSRNOG00000005353 ENSRNOT00000007185 1 1 1 87 4 132740747 132740765 CTGCACCTTTAGGAACAGC 59 132694064 132740696 ATTGATGCGAGGTTTCCTG 58 NA Rattus norvegicus 81 Klrg2 ENSRNOG00000006814 ENSRNOT00000009194 2 1 1 86 4 66375513 66375532 GAAGTCCAAGACTGGGAGAG 60 66372068 66375464 TAAGAAGTCCTGGGTGTGG 59 NA Rattus norvegicus 81 Ywhab ENSRNOG00000010945 ENSRNOT00000016981 2 1 1 93 3 160393145 160393163 GAGAAGAAGCAGCAGATGG 58 160393220 160395207 ATTTGTCCAACAGCTCCAG 58 NA Rattus norvegicus 81 Gpaa1 ENSRNOG00000029280 ENSRNOT00000048706 3 1 1 80 7 117395262 117395281 GACTGGAGGTCTACACTCAG 59 117395324 117395554 TACCCGAGACCATATAGCG 58 NA Rattus norvegicus 81 Rfxap ENSRNOG00000056028 ENSRNOT00000092028 3 1 1 88 2 144005312 144007080 TCAAACTGGAGGAAAGCAC 58 144005242 144005260 TAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 Lurap1 ENSRNOG00000023459 ENSRNOT00000035348 3 1 1 198 5 135001566 135001584 GACTTACGAGACGTGGAGG 60 134993070 134993089 GAATCTTCACATCGATGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000091053 1 1 2 66 7 143883608 143883626 TCTTCCTTGTACCGCATCG 60 143883740 143883758 CGATAAAGGATTCCACGGG 58 NA DesignNoJunction Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 3 1 1 61 3 148051634 148057400 CGGAACTGGTAATGTCAGG 58 148051591 148051609 ACAGAATCCTCTGTTGCCC 60 NA DesignNoJunction Rattus norvegicus 81 Sars2 ENSRNOG00000019962 ENSRNOT00000027166 3 1 1 83 1 86930018 86930036 TACCCTCAGCAAGCTTGTC 60 86931069 86931285 CCACAGCCTTCAAACACAG 59 NA Rattus norvegicus 81 Rnf208 ENSRNOG00000010607 ENSRNOT00000014087 1 1 1 228 3 2462473 2462491 CTGACCTCTGCTACAGGAG 59 2462871 2462889 TTTCAGGCAGGACATGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Acaa1a ENSRNOG00000032908 ENSRNOT00000045049 3 1 1 106 8 128029319 128030553 TTTCTGAGTGGCATCCCAG 60 128030859 128030877 GACCCATTTCTGATGCCAC 59 NA Rattus norvegicus 81 Plbd1 ENSRNOG00000008933 ENSRNOT00000011930 1 1 1 80 4 170591278 170591297 CTGGGACTTCAACATCAAGG 59 170569674 170591235 AGAGACTCCAAGAACCCTG 58 NA Rattus norvegicus 81 Crhbp ENSRNOG00000017890 ENSRNOT00000024191 2 1 1 80 2 25145642 25149109 CCTTCAGTTGAAGAAACCTGC 60 25145582 25145600 GTGTCCAGTCCAGTTCCTC 60 NA Rattus norvegicus 81 St6galnac6 ENSRNOG00000046984 ENSRNOT00000074401 2 1 1 80 3 11630854 11633727 TGAGTAGCAACAAAGAGCAG 58 11633770 11633788 TGGAGCTGTAGAGGATGAG 58 NA Rattus norvegicus 81 LOC684299 ENSRNOG00000039663 ENSRNOT00000060827 1 1 1 80 9 23559742 23561851 GAAGGAAGGGTTCTGACAC 58 23559680 23559698 GTCCAAGTCAGACTTGTGG 58 NA Rattus norvegicus 81 Elmod1 ENSRNOG00000009054 ENSRNOT00000012041 2 1 1 80 8 58506449 58508689 TGACATCAATCCACAGTTGG 58 58506388 58506408 ACATCTGCAATGAGGTTTCTG 59 NA Rattus norvegicus 81 Lrrc4b ENSRNOG00000019418 ENSRNOT00000026259 3 1 1 82 1 100450583 100466560 GAACAGCATTCAGGTGATCC 59 100466605 100466623 GCACCAGATTCTTGCTCAG 59 NA Rattus norvegicus 81 Olr1389 ENSRNOG00000050601 ENSRNOT00000047454 2 1 1 60 10 34578739 34578757 TCCTCTCCTCTACACAACC 58 34578781 34578799 TGATGAGATAGCCAAAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankmy1 ENSRNOG00000048567 ENSRNOT00000071359 3 1 1 80 9 100046524 100047689 CAATAAGATCGCCCTGATTGAC 60 100046465 100046485 CTTTCACCTTGCACAATTGTC 59 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843,ENSRNOT00000066777 2 2 2 80 3 1980150 1980170 AACTACAAGTACGTCTCCCAG 59 1979417 1980109 AACGCAGTACTGCAAATGAG 59 NA Rattus norvegicus 81 Atxn1l ENSRNOG00000038766 ENSRNOT00000059225 3 1 1 60 19 41932764 41932786 CAGTTTATTGGGTCTCCTTACAG 59 41932803 41932824 GATTGGGTAGGAAATTAGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp746 ENSRNOG00000007064 ENSRNOT00000009247 1 1 1 80 4 77743714 77743732 GGAAGACTGGCAGAAGGAG 60 77742851 77743670 GAGATGGCATAGTCCAGGG 59 NA Rattus norvegicus 81 Arhgap18 ENSRNOG00000011245 ENSRNOT00000015547 1 1 1 80 1 19259126 19260834 ACTTCTGTGGACAATCCCT 58 19259064 19259083 GCTCTCCTTTCCTTCTTCTG 58 NA Rattus norvegicus 81 Alox15b ENSRNOG00000007778 ENSRNOT00000010415 3 1 1 80 10 55775103 55775218 GAAAGCTCAGGTATGCCCT 60 55775041 55775060 TGAGCAGGTGAATATCACCA 59 NA Rattus norvegicus 81 Chadl ENSRNOG00000024631 ENSRNOT00000000205 1 1 1 80 7 122923492 122923917 CTGGAGCAGATTTCTCCCA 59 122923430 122923448 CTGAAGTTGGTTCTGCTGC 60 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058068,ENSRNOT00000058067 1 3 3 80 14 81951872 81951894 CCATCTCTTCTACATGGAATCAG 59 81951930 81981191 TGGAGATACCCTGGATATTAGGA 60 NA Rattus norvegicus 81 Vit ENSRNOG00000004706 ENSRNOT00000006360 3 1 1 80 6 1184637 1184655 TCCTAGTGGATGTCGTCCA 60 1184699 1201010 CAGGGTTGTCTCCGTACTG 60 NA Rattus norvegicus 81 Fam115c ENSRNOG00000050703 ENSRNOT00000071511 1 1 1 80 4 72054824 72055678 GTTCAGATATCAAATGGCTGG 57 72054764 72054784 CAAACTGACTAGTTCTTGCAC 58 NA Rattus norvegicus 81 Ripply3 ENSRNOG00000001684 ENSRNOT00000002289 1 1 1 80 11 34557848 34558674 GGCCAGAAAGTTCCATTCC 59 34558718 34558736 GACGTTCAGTTCTGGTCAG 58 NA Rattus norvegicus 81 Junb ENSRNOG00000042838 ENSRNOT00000067780 2 1 1 60 19 26094383 26094404 CTCTTCACGACTACAAACTCCT 60 26094344 26094362 CGATAAGGATCTGCCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910214 ENSRNOG00000024462 ENSRNOT00000034036 1 1 1 80 12 41184886 41184905 CAACACTTCCTGAAGCATCC 59 41181807 41184846 CTCCTTACACAGTTGATACCAG 58 NA Rattus norvegicus 81 AABR07051551.1 ENSRNOG00000058460 ENSRNOT00000074266 1 1 1 113 3 16846460 16846478 CAGACTCCTGCTATGGGTG 60 16846797 16846816 CAGGAGATGGTAACCCTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Col4a3bp ENSRNOG00000015686 ENSRNOT00000021549 2 1 1 80 2 27424724 27425767 CATCTTCATTCAAGAAAGGCCA 59 27425808 27425826 CCTGCCTACACAGGATGTC 60 NA Rattus norvegicus 81 Foxi1 ENSRNOG00000006293 ENSRNOT00000009058 1 1 1 108 10 19163958 19163976 ACAACAAGAGCAAAGCTGG 59 19162247 19163886 TAATTCCCTTTGCCTGGGT 59 NA Rattus norvegicus 81 Pag1 ENSRNOG00000061328 ENSRNOT00000090023 3 1 1 80 2 94274193 94275412 ATTAGAAACTGTAGAGGTGACC 57 94277348 94277367 TTGTCCAGGCTTATTCACTG 58 NA Rattus norvegicus 81 Lhx6 ENSRNOG00000005996 ENSRNOT00000008817 1 1 1 80 3 15419081 15419100 TCCACTATTCTCCGTTCAGC 60 15415341 15419038 CGCACTGTACCTGACTCTC 60 NA Rattus norvegicus 81 Ets2 ENSRNOG00000001647 ENSRNOT00000002247 1 1 1 80 11 36087711 36087729 GAGGAGTGACCCAGTTGAG 59 36087773 36089281 TGGATTGGTCCACTTCCAG 59 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000060452,ENSRNOT00000016828 1 2 2 80 9 38550232 38550250 GAGGATGAGTACGAGCCTC 59 38550294 38551704 AAGATCTTCCGACTGGCAG 60 NA Rattus norvegicus 81 Cldn14 ENSRNOG00000001691 ENSRNOT00000002297 1 1 1 133 11 34133592 34142367 GAGCTGTTCTGTATGCCTC 58 34133477 34133495 TAAGCAGGAAGCCTAGGAG 58 NA InUTR Rattus norvegicus 81 Ddx43 ENSRNOG00000050868 ENSRNOT00000072933 2 1 1 80 8 85758441 85758460 CAGCCATTGATAGATTGGGA 58 85758502 85762321 AATTGGAGGTAAATCTGCCC 58 NA Rattus norvegicus 81 Gdf10 ENSRNOG00000051993 ENSRNOT00000087037 2 1 1 84 16 10250779 10250797 AGAAGTACAACCGGAGAGG 58 10250845 10258758 TTCTGGTCGATCACATCCA 58 NA Rattus norvegicus 81 Pvrl4 ENSRNOG00000004029 ENSRNOT00000005550 2 1 1 80 13 89770396 89770672 ACTGTAGAAGTTCTTGACCCTG 60 89770713 89770731 AATCACACCCACTACGACC 59 NA Rattus norvegicus 81 Syde1 ENSRNOG00000007307 ENSRNOT00000009606 2 1 1 81 7 14040435 14040631 CAACCATCTTTCGAGGGTG 59 14040675 14040694 AACGTTAGCTTGGCATACAG 59 NA Rattus norvegicus 81 Apoa2 ENSRNOG00000003500 ENSRNOT00000004662 1 1 1 80 13 89597921 89597942 CAGAGTTTAACTGACTATGGCA 58 89597983 89598584 AAAGTAAGCCTTGGCTTGG 58 NA Rattus norvegicus 81 Zfand2b ENSRNOG00000018639 ENSRNOT00000025219 2 1 1 98 9 82372754 82372773 TATTGCTTTGCAGAATGGCT 59 82372918 82373211 TCTTGAGAACTTGGGATCTGG 60 NA Rattus norvegicus 81 Ccdc96 ENSRNOG00000006575 ENSRNOT00000008601 2 1 1 147 14 79445374 79445392 TTAGCTCCGAACCTCTGAC 59 79445086 79445105 TATTCATGCTCGTCTGAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Tgm3 ENSRNOG00000006753 ENSRNOT00000063828 2 1 1 82 3 122570614 122570632 ATACATCAGCACCAAGGCA 59 122570678 122574190 CCTCCTTGGAACCTTCTGG 60 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000061251 ENSRNOT00000085565 3 1 1 60 2 195278709 195278728 CTGAAGACAAGCTTACCCTG 58 195278668 195278686 GGCCTGCTAAAGTAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc44a2 ENSRNOG00000031824 ENSRNOT00000049973 1 1 1 80 8 22383297 22384534 CTCTGTTTCTTGGAGGATCTG 58 22384573 22384594 GAGTTTCTTGAGAGTGGAAGAC 59 NA Rattus norvegicus 81 Lamtor5 ENSRNOG00000018186 ENSRNOT00000024473 2 1 1 93 2 210037292 210037310 GATATCTGTTCTCGCCCAG 58 210037364 210039016 CATAACATTCCCGTTATCTGAC 57 NA Rattus norvegicus 81 Hnf1b ENSRNOG00000002598 ENSRNOT00000047427 1 1 1 80 10 71164885 71164903 CATGAAGACCCAGAAGCGA 60 71164947 71170470 GTCTGGTTGAACTGTCGGA 60 NA Rattus norvegicus 81 Tbk1 ENSRNOG00000005528 ENSRNOT00000009260 2 1 1 80 7 63659822 63659929 AATGGATGCGAAAGATGCT 58 63659760 63659778 ACACCTCCTCTTCGATGTC 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 2 2 2 83 11 31818580 31818599 GTAGATCTCCCATTCGTCGG 60 31818640 31820187 GAGCCTTATCCAAATCTGTTAGAC 59 NA Rattus norvegicus 81 Il7 ENSRNOG00000011973 ENSRNOT00000016091 2 1 1 92 2 96471261 96472305 TGATGATACAAAGGAAGCTGC 59 96472357 96472377 TGGTCATTGAATTCCTCACTG 58 NA Rattus norvegicus 81 Ssr3 ENSRNOG00000011148 ENSRNOT00000014912 1 1 1 80 2 156014440 156014458 ACTCTGTTCCTGGTTCTGG 59 156013407 156014399 GGACAGAATGTAGTTCACTGTG 59 NA Rattus norvegicus 81 Lmx1a ENSRNOG00000004642 ENSRNOT00000006163 3 1 1 81 13 86050222 86050240 CATCTTGACCACTCAGCAG 58 86050285 86052386 AGTCTCCCTCACCTTTCTG 58 NA Rattus norvegicus 81 Arhgap30 ENSRNOG00000004192 ENSRNOT00000005619 3 1 1 80 13 89789481 89789500 CTCATTTAGTGCCCAAACCA 59 89789543 89790719 ATGTCCTTAGACCTCAGCA 58 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000011784,ENSRNOT00000083312 3 2 2 80 10 13808330 13809265 ATATCTGCCATCAATGGCG 58 13809309 13809327 GTTGTCCGCCATTATCCTG 59 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000074523 3 1 2 123 10 58862604 58862622 ACTTCACTCTCCATGAGGC 59 58862709 58868882 GAACACTGTTTCTGCTGGT 58 NA Rattus norvegicus 81 Pnlip ENSRNOG00000017725 ENSRNOT00000024065 1 1 1 80 1 279808417 279808436 ACCCAACTCTACCCAAAGTG 60 279808474 279811270 CTTGACTACAGAAGTTGAACACTC 60 NA Rattus norvegicus 81 Gipc1 ENSRNOG00000003864 ENSRNOT00000005374 3 1 1 80 19 24795609 24795722 TTCATTAAGCGCATCAAGGA 58 24795763 24795783 GTTGATGGCTTCAATCATGTC 58 NA Rattus norvegicus 81 P4hb ENSRNOG00000036689 ENSRNOT00000054958 3 1 1 80 10 109739940 109739958 GTGTCTGACTACGATGGCA 60 109739650 109739900 GATGAAGATGAACAGGATCTTGC 60 NA Rattus norvegicus 81 Tekt1 ENSRNOG00000014973 ENSRNOT00000066740 2 1 1 80 10 58910602 58922192 TGAACAAGAAACTTGAGCAGAG 59 58910543 58910564 TCACAAGATGTTCGAGTTTGTC 59 NA Rattus norvegicus 81 Sdf2 ENSRNOG00000012121 ENSRNOT00000016297 2 1 1 80 10 65514508 65517220 TCTGGAAACCAGGAAGTGAG 59 65517262 65517281 TCCATTACAGAGCACTGTCC 60 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 3 3 3 80 14 6503660 6503678 GCTGAGCTAATACCCAGGA 59 6499652 6503616 ACTCGTTCTTAGTCCTGCT 58 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000051653,ENSRNOT00000085857 2 2 2 81 2 25088179 25089349 GGATTCTACTATGATTCTGAGAACC 59 25088122 25088141 GACCACTTTCCACATCACAG 59 NA Rattus norvegicus 81 LOC691044 ENSRNOG00000028373 ENSRNOT00000057620 2 1 1 80 2 154982610 154988589 GGAAGTTCTACAGGTTCAGAG 58 154988630 154988649 AGATCGTAGTCGATTTGGAG 57 NA Rattus norvegicus 81 Cacna1h ENSRNOG00000033893 ENSRNOT00000043626 1 1 1 80 10 14749797 14749957 CATCTTCCAGGTCATCACAC 58 14749736 14749756 ATGAAGTTGTAGAACGAGTGG 58 NA Rattus norvegicus 81 Plekha3 ENSRNOG00000011830 ENSRNOT00000016132 2 1 1 80 3 63549221 63551853 TTCAGATGATGAAGCGTTCAG 59 63553974 63553993 ATGCTGGTTCTTTGATGGAG 58 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 1 2 2 80 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296078 116296096 AACATCAGGAGTGCTTCAG 58 NA Rattus norvegicus 81 Plxnb3 ENSRNOG00000061731 ENSRNOT00000080088 2 1 1 80 X 157024570 157024676 AGGCTCAGATCATGTCACC 59 157024508 157024529 TCATAGAAGGAGAATGTGGTGG 60 NA Rattus norvegicus 81 Il21 ENSRNOG00000017376 ENSRNOT00000023348 2 1 1 80 2 123972253 123972273 TCTGATTAGACTTCGTCACCT 58 123972078 123972215 GTTAGAAGTTCAGGATCCAAGTC 59 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 2 2 2 81 8 44063195 44063508 GGAAAGTGAGGTTCCAGTG 58 44063552 44063571 GAGAAGAGCAACCATCTCTG 58 NA Rattus norvegicus 81 Lrp2bp ENSRNOG00000011178 ENSRNOT00000041617 3 1 1 81 16 49452877 49452895 CCCTTTCTCGCTATCTCAG 57 49452137 49452832 ATGGCGGTAATAATCAGGC 58 NA Rattus norvegicus 81 Capza1 ENSRNOG00000013538 ENSRNOT00000056015 2 1 1 80 2 207322418 207322438 CATTTGCCCAGTATAACATGG 57 207321635 207322379 CATGCTCTGTAATTAAGACCTG 57 NA Rattus norvegicus 81 Maea ENSRNOG00000005397 ENSRNOT00000007181 3 1 1 80 14 82665263 82665752 TCTATGGCTACAATTCTCTGCT 59 82665204 82665225 AGAAGTGGAAGACTTCTTTGGT 60 NA Rattus norvegicus 81 Ka11 ENSRNOG00000061636 ENSRNOT00000084619 2 1 1 80 10 88143696 88143717 GGGTTATGGTAGTCATAAGTGC 59 88143453 88143655 GTGGCTGTCATGATCTGAG 58 NA Rattus norvegicus 81 LOC690142 ENSRNOG00000025898 ENSRNOT00000010990 1 1 1 80 7 132413214 132413232 CAGTCCACCAGCTACTCTC 59 132413271 132416357 CTGATCTTCATCTTCAGATAGCAG 59 NA Rattus norvegicus 81 Zfp961 ENSRNOG00000049856 ENSRNOT00000074514 1 1 1 80 16 19542662 19544365 AAATCTGAGAGTCCAAGTGGT 59 19542602 19542623 TTTGACTGGACAACTGTTTCTG 59 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 1 1 1 66 1 280637443 280637461 ATCATTACGTGGTGGGAGC 60 280637491 280639440 ACCTGAGTTTCCGTAAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rasal3 ENSRNOG00000006167 ENSRNOT00000066722 2 1 1 80 7 14406138 14406911 CAATCCAGCTTCTCTTCAGG 58 14406077 14406097 CTTGGAAATGAGAGGAGTGTG 59 NA Rattus norvegicus 81 Vom1r64 ENSRNOG00000048104 ENSRNOT00000074328 3 1 1 60 9 101223426 101223446 CCACATTCATTAGCATCATGG 58 101223467 101223486 TGTCTATGGAGGAGAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821 1 2 4 80 13 91149664 91154284 TCTGGAAGTGATTTCTGACTG 58 91149604 91149625 CACCTCAATGTGATTCTTTCTC 58 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 1 3 3 80 8 78371993 78372011 AGTTGAGCAGCAACTTCAC 59 78371188 78371950 TCTTCCATTCGAGACTGCTC 60 NA Rattus norvegicus 81 LOC300308 ENSRNOG00000048230 ENSRNOT00000046378 1 1 1 122 7 20263468 20263486 TTCCTACTCACCTGTCTGG 58 20341537 20412663 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985,ENSRNOT00000074889 2 3 3 80 14 5941955 5941973 GCCATCTCTGTCTTCATGG 58 5942014 5942690 CTCACCTATTAATTTCACCAGC 57 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000049796 ENSRNOT00000074250 1 1 1 60 8 41366741 41366759 TCTTCTATGGATCTGGGCT 57 41366783 41366801 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpxm1 ENSRNOG00000021220 ENSRNOT00000028818 1 1 1 80 3 122917926 122917946 CCCATACACTAGGATCATCTG 57 122917544 122917886 TCACCTCTTTCATCAACTTCC 58 NA Rattus norvegicus 81 Erich6 ENSRNOG00000013662 ENSRNOT00000018294 3 1 1 80 2 148825551 148827805 CAAAGGGAAATCACATAGGAGC 60 148825492 148825510 TTGGTGGTTAGCCTTTCCT 59 NA Rattus norvegicus 81 LOC100910872 ENSRNOG00000054063 ENSRNOT00000090123 3 1 1 129 8 116336622 116338469 CTTGAACATGAAGTGACACAG 58 116338560 116338578 TGGTACTCAGGATCAGCTC 58 NA InUTR Rattus norvegicus 81 Atxn7l2 ENSRNOG00000028749 ENSRNOT00000037336 3 1 1 81 2 210996624 210996998 GCCTATTGACTTGCAAGATCC 60 210996563 210996582 GCCACTAGCACATCAAAGTC 59 NA Rattus norvegicus 81 Abcd1 ENSRNOG00000056524 ENSRNOT00000084088 2 1 1 80 X 157075299 157075546 TATCACAGGCCCAAGTACG 59 157075237 157075255 TGCTTGGAAGATCTTGCCT 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940,ENSRNOT00000091355,ENSRNOT00000078354,ENSRNOT00000079962 1 5 5 80 7 80780605 80780625 CCGTTTAAAGTAAGTGATGGC 58 80780664 80782242 CTTGAAGACCTCAAATTCTGGA 58 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327,ENSRNOT00000020787 2 2 2 69 1 71384670 71384688 TCGGGATATGACAGAAGGC 59 71383506 71384638 GGTTCCTAAGGGAATTACCC 57 NA DesignNoJunction Rattus norvegicus 81 Kcna2 ENSRNOG00000018285 ENSRNOT00000050149 1 1 1 261 2 209841191 209841209 GAAGAGAACCTCAGGCTCC 60 209841856 209841874 ATAGGTGTCTTGAGGGTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000078402 2 1 2 83 13 89544802 89545182 ATGAGCTCGCTTAACACCA 59 89543632 89543651 CTTAATGCTGCCAGGTTTCC 60 NA InUTR Rattus norvegicus 81 Tmem131 ENSRNOG00000017265 ENSRNOT00000023550 1 1 1 80 9 43390437 43390455 AGAGTCAAACTCACTGCCA 59 43388784 43390394 GGTCAGGATCTCATAGTCGG 59 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560,ENSRNOT00000090673 1 2 2 80 7 14352219 14352327 CTTTCTGCAGGACTATGTCAC 59 14352159 14352178 ATCAGACCATCAAGGTCCTC 59 NA Rattus norvegicus 81 Zdhhc5 ENSRNOG00000006832 ENSRNOT00000009708 1 1 1 80 3 72095703 72096713 ACAACCAATGAACAGGTTACAG 59 72095644 72095665 ACGGCTAACATTGTTACAACAG 60 NA Rattus norvegicus 81 Mnda ENSRNOG00000003486 ENSRNOT00000036040 3 1 1 80 13 92083435 92084728 GAATACAAGTAAGAGGAGAAACCC 59 92083378 92083396 GGCTTGCAGTTGATGAAGG 60 NA Rattus norvegicus 81 Bcl2a1 ENSRNOG00000047606 ENSRNOT00000039850 2 1 1 107 8 96551771 96551792 CTGGATGTGGATACTTACAAGC 59 96551860 96559283 TGTGAAGCCATCTTCCCAG 60 NA Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 3 1 1 85 8 55604076 55623348 AAATCCACAGCTTCAGAGC 58 55623397 55623415 CTCAGTAGCTCCTTCACCG 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb33 ENSRNOG00000046156 ENSRNOT00000074486 1 1 1 60 X 124322380 124322398 AGTAACAACACAGCGACAC 58 124322420 124322440 TCACTTCCGAAATAGCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd16 ENSRNOG00000036675 ENSRNOT00000067742 2 1 1 80 1 201349062 201352384 TCTGAAAGTCCATTCAACTGAG 58 201352425 201352443 GGGTCATTGATCCTCAAGG 58 NA Rattus norvegicus 81 Trappc13 ENSRNOG00000012124 ENSRNOT00000016439 3 1 1 80 2 34247384 34247402 TGATGCGATTGACCAAACC 59 34245928 34247344 TAAAGAGATCACCAGGTAAGTCC 59 NA Rattus norvegicus 81 Rnf113a1 ENSRNOG00000034040 ENSRNOT00000051474 3 1 1 60 X 124517365 124517383 GGACACTGAGAAGGAACGA 59 124517407 124517425 CTCCTGGATCTTCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562914 ENSRNOG00000012022 ENSRNOT00000016127 1 1 1 122 8 55695194 55696306 TCGTCTTTAGAGACTCCTGG 58 55695091 55695109 CTGACTCCAGTTGGGAGAG 59 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076620 3 1 3 98 20 47044715 47044735 ATCATACGGAACATTCCACAG 58 47041790 47044655 GATACGCACCTTGAAGTCG 59 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255,ENSRNOT00000092045 3 2 2 60 3 77153033 77153054 CATCTGTCTGTTGAACTTCCTC 59 77153074 77153093 TAGGGAGTGAAGGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr710 ENSRNOG00000059642 ENSRNOT00000081552 2 1 1 60 3 78544529 78544551 CACAGTAGTTGCCAATAATGGAG 60 78544491 78544514 GGAGAATAGAAGAAGGACAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kirrel2 ENSRNOG00000020864 ENSRNOT00000028306 2 1 1 81 1 88916383 88916646 CGCTGGAAGTGTTGTATGG 59 88916320 88916338 CTGAAAGACGCGTCTTTCC 59 NA Rattus norvegicus 81 Il36a ENSRNOG00000005722 ENSRNOT00000007540 2 1 1 81 3 1331671 1331784 GGATAAAGAACTAAGTGCAGC 57 1331827 1331845 ATTGTCTTGAAGGACCCAC 57 NA Rattus norvegicus 81 LOC691033 ENSRNOG00000042535 ENSRNOT00000057619 3 1 1 81 2 155089046 155093467 GCATACTGTGACACTCCTC 58 155093512 155093530 TCATTGGCAGTAACTTGCT 57 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295,ENSRNOT00000074685 3 2 2 96 13 36154864 36154882 GTGGGCGATGTAAACACAG 59 36147911 36150851 TTTCCTTGGAAGTTCCTTTCAG 59 NA Rattus norvegicus 81 Inhbb ENSRNOG00000060237 ENSRNOT00000086350 1 1 1 82 13 35439198 35441788 CTTTGCAGAGACAGATGGC 59 35439134 35439153 CAAATAGGTTCTGGTTGCCT 58 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 1 2 2 98 3 166985499 166987008 CCTTGAAGGAAAGAGGCCT 59 166985419 166985439 GGTCGATAATGCGTATTTCCA 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 2 2 2 80 3 161212899 161213780 GACCACAAGTTTCACAGATCC 59 161213821 161213840 TGGATCTCCTCATTGATGCT 59 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000047540 ENSRNOT00000073066 2 1 1 91 1 69246931 69246949 CCGGAGACTGGTATTACCG 59 69245436 69246876 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Psd4 ENSRNOG00000006079 ENSRNOT00000008161 2 1 1 80 3 1504090 1506807 TGCAGAAGGACTTCCTGAG 59 1506851 1506869 CTAGATGGTGATGGCCTCC 59 NA Rattus norvegicus 81 Phf3 ENSRNOG00000011756 ENSRNOT00000015638 1 1 1 80 9 37117804 37117825 TTTGAGGGACAGAGTAGAAGAC 59 37112230 37117766 CTTCTTACTTGTTCTTGTGCCA 59 NA Rattus norvegicus 81 Slc39a5 ENSRNOG00000033361 ENSRNOT00000045547 2 1 1 80 7 2818079 2818097 GCCTAGACCTCTTCCACAG 59 2817283 2818036 GGGAACCATTCAGACAATCC 59 NA Rattus norvegicus 81 Rpl31 ENSRNOG00000013508 ENSRNOT00000033733 2 1 1 80 9 46089219 46090073 GGAATAAGGAATGTTCCGTACC 59 46090113 46090132 GAGCTTGTTTGGTGAATCCT 59 NA Rattus norvegicus 81 Asf1b ENSRNOG00000005115 ENSRNOT00000006964 3 1 1 80 19 25090561 25090580 TGTCAACAATGAGTACCCAG 58 25090623 25091485 ATGTTCCGCTGTAACTGAG 58 NA Rattus norvegicus 81 Mtfr1l ENSRNOG00000016937 ENSRNOT00000022908 2 1 1 80 5 152743536 152743926 GAAGCCAATGTGACTATCCC 59 152743475 152743496 ATTGGTCCCAATTCTTCTTACC 59 NA Rattus norvegicus 81 Nck2 ENSRNOG00000017155 ENSRNOT00000023029 2 1 1 102 9 50313759 50313777 ACCTTCAAGGTGTCCTCAG 59 50313843 50335809 TCATGGAGCCCTTCTTTGG 60 NA InUTR Rattus norvegicus 81 Aga ENSRNOG00000000108 ENSRNOT00000000120 1 1 1 80 16 41226899 41226920 ATCCATAAGACGGGACATACTG 60 41225574 41226858 TGAGTCTCCTACACGACCA 60 NA Rattus norvegicus 81 Poteg ENSRNOG00000012218 ENSRNOT00000016348 3 1 1 80 16 68830438 68830626 CTCATAAAGTCTGTCCAGTGC 59 68830378 68830397 GTCGATAACGTTCGGATCAG 59 NA Rattus norvegicus 81 LOC501033 ENSRNOG00000013399 ENSRNOT00000018553 1 1 1 91 8 96977748 96982847 ATCAAAGGAGGCAGACAGG 59 96977675 96977693 TGAACACCTGTTCCACCAG 60 NA Rattus norvegicus 81 Ankrd34c ENSRNOG00000013937 ENSRNOT00000018685 3 1 1 81 8 97107137 97114633 ATAAGCAGGTCTGACTACCC 59 97107075 97107094 TCAGTCCTCAACTCAGTGTC 59 NA InUTR Rattus norvegicus 81 Dnaja4 ENSRNOG00000012106 ENSRNOT00000017053 1 1 1 80 8 59285555 59285577 CTTCACCCATGGATATCTTTGAC 59 59285613 59287780 GTACAACATTCTTGCCTCTTCTC 60 NA Rattus norvegicus 81 Sez6l ENSRNOG00000025612 ENSRNOT00000032193 1 1 1 80 12 50237112 50237131 TAGCCATCTTCATTCCGGTC 60 50237174 50238027 AATATTGTCGGCACCTCGT 60 NA Rattus norvegicus 81 Tmem189 ENSRNOG00000060571 ENSRNOT00000090493 2 1 1 132 3 164377554 164378118 GTATCACCACAGGTTGGCT 60 164377440 164377458 TACTTGATCTTCTGGGCCC 59 NA Rattus norvegicus 81 Ntng1 ENSRNOG00000031136 ENSRNOT00000066218 2 1 1 80 2 212746577 212746595 GTAAGACTGGAACGACAGG 58 212699491 212746533 AGACATTAGGTTGACAGCC 57 NA Rattus norvegicus 81 Rgs7bp ENSRNOG00000013389 ENSRNOT00000018058 1 1 1 80 2 35077584 35086868 AAATCAAGATGACAGCAGCC 59 35077523 35077543 CATAACCCGAAGAACCTTCTC 59 NA Rattus norvegicus 81 LOC100365525 ENSRNOG00000031248 ENSRNOT00000058250 3 1 1 80 2 132548069 132549340 CAACCTTTCGTTCCATGGA 58 132547412 132547432 TGTTCTGCTTCTTGACTTCAC 59 NA Rattus norvegicus 81 LOC100910447 ENSRNOG00000003863 ENSRNOT00000005270 3 1 1 129 19 26143079 26143097 GAATCAGAAGAGGAAGGGC 58 26145459 26145736 TGTTAATACCTCATCCTCCGT 58 NA Rattus norvegicus 81 LOC100911874 ENSRNOG00000003872 ENSRNOT00000005228 3 1 1 80 9 52897120 52897141 AGATGAGTACTAAATCCGTCCC 59 52895902 52897080 ACCAAAGACCGATTCTAGCA 59 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015,ENSRNOT00000091896 2 2 2 80 2 211227197 211227215 GAGCGATTTGAGAACCTCC 58 211226236 211227153 GTTGTCTGCATCCTCATCG 59 NA Rattus norvegicus 81 LOC100911393 ENSRNOG00000046062 ENSRNOT00000073176 2 1 1 60 X 119162233 119162252 CCTAACAGAAGACTGGTCCC 60 119162192 119162212 GCTGATAATGCTGAGACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041973.1 ENSRNOG00000031222 ENSRNOT00000048467 3 1 1 60 X 144446434 144446453 TCCACCTTCTCATCTCATCC 59 144446475 144446494 CAACAGACTCTTCCATCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plbd2 ENSRNOG00000001385 ENSRNOT00000001872 2 1 1 80 12 41605363 41605383 AAATGGCAGCTACAATGACAG 59 41605425 41610181 ATGTAGATGAGCTCCTCGG 58 NA Rattus norvegicus 81 Arse ENSRNOG00000028350 ENSRNOT00000033080 2 1 1 86 2 122878894 122879439 CTATCCGCTCAGGGATGAC 59 122879488 122879507 TGATCTCCTTTGGAGGAAGG 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112,ENSRNOT00000082408 1 4 4 80 9 47034322 47034340 TCTTGGAGGGACAGTTTGG 59 47034380 47034874 TAGTAACCTCGATGGTATCTTCC 59 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087782 2 1 3 60 20 5231431 5231449 AAAGAGACAGTGTGGACCC 59 5231389 5231407 ATTACCACACTGCTCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bloc1s1 ENSRNOG00000007784 ENSRNOT00000010380 1 1 1 92 7 3342815 3343308 GGCACTTAAGGAAATCGGG 59 3342741 3342759 TTGTAGACGTACTCCAGCG 59 NA Rattus norvegicus 81 Dnhd1 ENSRNOG00000051291 ENSRNOT00000081667 3 1 1 80 1 170556456 170556474 GTTGAACCCACTACCTCCA 59 170556515 170558984 TTTGTCACATGGTACTTTGCTC 60 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767 1 1 3 89 1 40861620 40899160 GATGAGGATGTTGGACAGC 58 40899213 40899231 ATCTTCAACAGCTGTGGAG 58 NA Rattus norvegicus 81 Aen ENSRNOG00000018421 ENSRNOT00000064438 2 1 1 91 1 140588142 140591086 CCAGAAGGAGATCCTTAAGCT 59 140591139 140591157 CAGGGTGGACGTACTTCAG 60 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 3 2 2 138 1 80606778 80609216 GATCAAGACTCGGAACTGGT 60 80606659 80606678 TATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Mixl1 ENSRNOG00000003176 ENSRNOT00000004244 1 1 1 80 13 97280180 97281898 AGTCAAGGATCCAGGTGTG 59 97280118 97280136 AGGATAAGGGCTGAAACGA 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268,ENSRNOT00000014147,ENSRNOT00000038549,ENSRNOT00000058727,ENSRNOT00000081522,ENSRNOT00000082355,ENSRNOT00000013991 3 7 7 80 16 64052178 64052932 CTCCTAGTCACAGCTGGAG 59 64052972 64052994 CTACCGAAGACATCATGATTACG 59 NA Rattus norvegicus 81 Ccdc185 ENSRNOG00000022104 ENSRNOT00000037997 3 1 1 60 13 101161529 101161548 AAGATCCCATCTTCCAGGAG 59 101161488 101161506 TAGCAGCGGTTTATCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453,ENSRNOT00000061657 1 2 2 80 7 3360743 3362388 GGCAAGGTTGTTACCTGTG 59 3362432 3362450 ACCAATCACATCCCGAGTC 60 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 1 2 2 80 14 84650305 84650329 CTCTATCTCGTGTATAACGTATCTG 59 84647897 84650270 AAACTGAGGTCATCCAAATAGC 59 NA Rattus norvegicus 81 Magea8 ENSRNOG00000048840 ENSRNOT00000039874 1 1 1 60 X 43184230 43184248 CATCCCAGAGCATACCCTG 60 43184270 43184290 CGACCCTGTCTATCTCATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Whsc1 ENSRNOG00000038140 ENSRNOT00000021952 1 1 1 80 14 82128312 82129870 AAAGGGACATCAGAAAGGGAG 60 82128252 82128272 TGATTCTTGCCATACACTCCT 59 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 2 2 2 81 1 71434849 71434867 AAGAAGCTTGGTCTCCAGG 59 71434911 71445501 ATGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Slc25a39 ENSRNOG00000020994 ENSRNOT00000028496 1 1 1 80 10 90352429 90352447 CAAGAGTTGACTCCACCTG 58 90352264 90352385 GGAGGAAACCTGCAAAGAG 59 NA Rattus norvegicus 81 Tmsb4x ENSRNOG00000047931 ENSRNOT00000071708 3 1 1 90 X 28594521 28594542 GAAGAAGACAGAAACACAAGAG 57 28594989 28595007 CTCGCCTCATTACGATTCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem194b ENSRNOG00000012924 ENSRNOT00000029204 1 1 1 81 9 53722206 53722230 GTACCGTGTTAGGTATTCTAATGAC 59 53721463 53722169 CCAAATGTGCTATACTTCGGG 59 NA Rattus norvegicus 81 Paox ENSRNOG00000018838 ENSRNOT00000064501 3 1 1 82 1 212601203 212601223 GGAGTTTATGGAGACTCTGTC 58 212601267 212602079 ATTGTGGGTTTCCTGTCAC 58 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000087615 1 1 5 60 20 4806473 4806491 CGAGGTCAACATCAGTGAG 58 4806327 4806450 TGTTCAATCACTGTAGGAGG 57 NA DesignNoJunction Rattus norvegicus 81 Hnf1a ENSRNOG00000001183 ENSRNOT00000001565 2 1 1 85 12 47408210 47408229 CCCATTCTGAAAGAGCTGGA 60 47408277 47418698 GGGTCCTCCTGAAGAAGTG 59 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938 2 1 2 113 8 98752147 98756682 CACATACAGGCGAGAAACC 59 98756759 98756777 TATAAGGCTTGTCGCTCGT 59 NA Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 3 2 2 80 9 2205407 2209052 CTTAGGAAAGGAACCATGTTACC 59 2209090 2209110 CTCCTCCTTGCAATCATACTC 58 NA Rattus norvegicus 81 Proser3 ENSRNOG00000024625 ENSRNOT00000032363 3 1 1 80 1 89004450 89004468 CACTGAGGGACAGAGTACC 59 89002039 89004407 AACCGGTTTATGTACTTGGC 59 NA Rattus norvegicus 81 Olr1065 ENSRNOG00000049157 ENSRNOT00000048396 1 1 1 60 7 9294835 9294854 ATCATTCTGTTGACTCTGCT 57 9294874 9294895 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Svs6 ENSRNOG00000026346 ENSRNOT00000018510 2 1 1 80 3 160696419 160696437 AAATTCTCACAGTCGGCTG 58 160696573 160696591 GACATCCTCATGGATGACG 58 NA DesignNoJunction Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616,ENSRNOT00000008785 2 2 2 81 7 97961809 97962762 CAGTTTAGGAGGAAATTCAGAGTG 60 97961751 97961769 AGTCCTTCATGTGAGACCG 59 NA Rattus norvegicus 81 Cd53 ENSRNOG00000017874 ENSRNOT00000024344 1 1 1 80 2 209506081 209506101 CCATTATCATGGTAGTTGCCT 58 209502338 209506042 GAACAAAGAACGACATAAGCAG 58 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 1 2 2 60 14 85948313 85951512 ACACAGGTAACCTGGATGG 59 85948271 85948289 AGGAATACATCCTCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Tgfbr3 ENSRNOG00000002093 ENSRNOT00000002867 1 1 1 80 14 3633775 3633795 AATATGGAGCAGTGACTTCGT 60 3633834 3637900 GAAACACTTGATCTTCTCCCAC 59 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487,ENSRNOT00000085210 1 2 2 80 10 95261731 95261749 CAAAGGAGGCCAAGAAGGA 60 95259391 95261691 CACAGCCAATATAGAACTTGGAC 60 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 2 2 2 60 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794545 117794564 AACCACGGTAGTAGTTGTGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07055728.1 ENSRNOG00000032682 ENSRNOT00000004472 1 1 1 82 7 8504765 8504786 TATGTGGCCATCAAACCTC 58 8504831 8504850 GCAAACCATGAGCTAAAGAC 58 NA Rattus norvegicus 81 Slc9a4 ENSRNOG00000015306 ENSRNOT00000065234 1 1 1 80 9 47307966 47307986 GAAGAACCATGAGTGGAACTG 59 47308028 47310456 GTAAACACGCTGATGGCTC 59 NA Rattus norvegicus 81 Rmnd1 ENSRNOG00000019501 ENSRNOT00000060757 1 1 1 80 1 40961042 40961061 CTGAGCTGGACTTAGATGAC 58 40960000 40961002 AAATAGCCAGTTTCACTGAGAG 59 NA Rattus norvegicus 81 Rmnd1 ENSRNOG00000019501 ENSRNOT00000060757 3 1 1 80 1 40950038 40950056 ATCACCTCAATGAGAAGCG 58 40949495 40949994 CCAGCTCGAACATTACCTC 58 NA Rattus norvegicus 81 Eri2 ENSRNOG00000014673 ENSRNOT00000019747 1 1 1 80 1 189547213 189547232 TTCAGCCTCAAGAACATCCA 59 189546639 189547173 CTCCTTCATCAACTTGAACCTG 59 NA Rattus norvegicus 81 Shroom1 ENSRNOG00000007431 ENSRNOT00000074769 2 1 1 94 10 38821579 38821597 GGTTCAGAAAGGACTGTGG 58 38821737 38822353 GTCAAGAACCTGGAAAGCT 58 NA Rattus norvegicus 81 Nme1 ENSRNOG00000002693 ENSRNOT00000003658 1 1 1 82 10 81660510 81660528 ACATTGACCTGAAGGACCG 60 81658237 81660464 CTCCCAGACCATAGCAACC 60 NA Rattus norvegicus 81 Slc25a11 ENSRNOG00000003815 ENSRNOT00000005144 2 1 1 80 10 57266049 57266202 AATGGGCTGGATGTATTGC 58 57265987 57266006 GGCATAGTATGGTGTGAAGC 59 NA Rattus norvegicus 81 Cnnm1 ENSRNOG00000016302 ENSRNOT00000021876 1 1 1 80 1 263238651 263238670 CAACTTTGAGGAGCACAAGG 60 263238712 263240405 CATTCAGTCTCTGAAGCTGC 59 NA Rattus norvegicus 81 Rnf167 ENSRNOG00000003879 ENSRNOT00000005242 3 1 1 80 10 57271193 57271326 CATGGGAACAGTATTGATAGTTCG 60 57271362 57271383 TTCAGTTGCTCTTTGGTAAGTC 59 NA Rattus norvegicus 81 Olr165 ENSRNOG00000048219 ENSRNOT00000072602 3 1 1 60 1 169770083 169770103 TTTCCTTCCCATTCTGTTCCA 60 169770043 169770061 TAGAGCAGTCCACAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zhx1 ENSRNOG00000006412 ENSRNOT00000008454 2 1 1 82 7 97937672 97937692 GCCAAGTACCTCATTTGAAGG 59 97923391 97937628 CACAACTCCAATCACCTGC 59 NA InUTR Rattus norvegicus 81 Trub1 ENSRNOG00000017321 ENSRNOT00000023309 3 1 1 80 1 278411277 278411297 ACACAAGAAGATATCGAAGGC 58 278411338 278412625 CTTCAGTGCAGAATAGAGGG 58 NA Rattus norvegicus 81 Cmklr1 ENSRNOG00000000704 ENSRNOT00000000893 1 1 1 84 12 48789341 48791124 CTCCAAAGAGATGGAGTACGA 59 48791170 48791188 GTCCACGATGTAGTCCGAG 60 NA InUTR Rattus norvegicus 81 Wrn ENSRNOG00000015440 ENSRNOT00000058805 1 1 1 80 16 62586567 62587503 GCTATCCAGTTCTAATCCCGT 60 62587545 62587563 TGCTGTGTACTTGACCCAG 60 NA Rattus norvegicus 81 Rab35 ENSRNOG00000022014 ENSRNOT00000030031 1 1 1 80 12 46708090 46710929 CATCACCTCTACGTATTATCGG 58 46708031 46708049 ACATTGACAAAGGACTCGG 58 NA Rattus norvegicus 81 Mblac1 ENSRNOG00000001357 ENSRNOT00000001831 1 1 1 60 12 19336293 19336312 TCGGATCATATTGGGAACCT 58 19336333 19336353 AGTCATGGGAAACTAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr380 ENSRNOG00000045761 ENSRNOT00000048193 2 1 1 60 1 230686925 230686946 GCTATTCATCTGTTATTGTGCC 58 230686886 230686905 AAGACCACCTCATTATTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000074998 1 1 2 87 5 154266107 154266125 TACAGAGACAGAGGCTGAG 58 154266176 154266410 GAAAGACAGGCCGTATCAG 58 NA InUTR Rattus norvegicus 81 Trmt13 ENSRNOG00000015140 ENSRNOT00000064484 1 1 1 80 2 219623940 219623961 CCACTTTCTTCTCTATCTGAGG 58 219623751 219623900 TGTAGAGTTCAAGCCTTCAC 58 NA Rattus norvegicus 81 Msi1 ENSRNOG00000001156 ENSRNOT00000001532 2 1 1 82 12 46905918 46910329 GCATGTTAGGTTACCCAGGT 60 46905855 46905873 CTGGTAGGTGTAACCAGGG 59 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184,ENSRNOT00000024657 2 2 2 80 3 161452712 161453640 TATTACCACTGGACCCTCTC 58 161453683 161453701 CAGCGCATAATACCAGGAG 58 NA Rattus norvegicus 81 Asb16 ENSRNOG00000036794 ENSRNOT00000028388 2 1 1 81 10 90224080 90224099 TAACGCCTATCCATGTGTCC 60 90224143 90224773 GAAGGCTTCATGTTCCTGC 59 NA Rattus norvegicus 81 RGD1305537 ENSRNOG00000005112 ENSRNOT00000061680 1 1 1 60 1 231365400 231365419 GTGTAGATCGAAAGACCTCC 58 231365359 231365377 TTTGTAGAGCGTCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684376 ENSRNOG00000047871 ENSRNOT00000070789 1 1 1 60 1 168082392 168082410 AGATTTGTGGCTATCCGAG 57 168082350 168082370 CAATAACACCATGAGTGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccrl2 ENSRNOG00000033234 ENSRNOT00000044467 3 1 1 148 8 119326206 119326224 TTTATCTCGCCAGCTTGTC 58 119325752 119325770 AATTATCCATCGGAGGCTG 57 NA DesignNoJunction Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000073775 2 1 2 86 9 8350169 8350188 AAGTGTCAATTCGAGAGGGA 59 8350237 8351583 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 3 2 2 80 8 56594912 56594934 GCCTGATACTATTGAAGTACAGC 59 56594974 56597147 AATTGTGCCCGTTCTAGCT 60 NA Rattus norvegicus 81 Mrgprf ENSRNOG00000013426 ENSRNOT00000017948 2 1 1 80 1 218470101 218474421 ACCAGAACAAGATGTGTCC 57 218474465 218474483 TGGCAATCTGTTCAATGGT 58 NA Rattus norvegicus 81 Etv2 ENSRNOG00000024288 ENSRNOT00000031873 2 1 1 83 1 89093253 89093273 TTCTATTTCCCTGAAGTGGCA 60 89092990 89093208 CTCTGGGAACCCTTTCCAG 60 NA Rattus norvegicus 81 Fam159b ENSRNOG00000013372 ENSRNOT00000017870 1 1 1 87 2 34963070 34963088 AGACCTCAAGTACTGCTGC 59 34957987 34963019 AATCAGAGCACCAATGCTG 59 NA Rattus norvegicus 81 Olr89 ENSRNOG00000050189 ENSRNOT00000072397 2 1 1 60 1 168411840 168411859 CATTGCCATCTGTGATCCTC 59 168411881 168411900 CCGACCTAGAATTGAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 2 7 8 99 20 4389611 4389834 CTGGACTACATCAATGAGACAC 59 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Olr181 ENSRNOG00000050959 ENSRNOT00000043339 2 1 1 60 1 169882186 169882206 ACTTGGCATATTCTGGTTTGG 59 169882146 169882166 CATTTGAGCTATACAGTCCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr181 ENSRNOG00000050959 ENSRNOT00000043339 3 1 1 60 1 169881596 169881616 TGTATGTGATGATTCCACCTG 58 169881556 169881574 ATCTGTTTGGTTCTCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ido1 ENSRNOG00000031189 ENSRNOT00000051363 3 1 1 80 16 72224933 72225651 CCTGCAATCAAAGCAATTCCT 60 72225693 72225711 ACTACACAGTGCCTTCTCC 59 NA Rattus norvegicus 81 Semg1 ENSRNOG00000013776 ENSRNOT00000018420 2 1 1 81 3 160630130 160630388 GTTGGACAGTATGGTGGGA 59 160630067 160630085 AATTGAGGTGGCCTTTCTG 58 NA Rattus norvegicus 81 Dph5 ENSRNOG00000013719 ENSRNOT00000018367 2 1 1 85 2 218853921 218856963 CTTACTTGATATCAAGGTGAAGGAG 59 218864327 218864346 CACTCATGTAACGAGGAGGT 59 NA Rattus norvegicus 81 Gclm ENSRNOG00000013409 ENSRNOT00000018343 1 1 1 81 2 225843313 225843861 CAGTTGACATGGCATGCTC 60 225843904 225843924 ACTCCATCTTCAATTGGAGGG 60 NA Rattus norvegicus 81 Mybphl ENSRNOG00000037082 ENSRNOT00000027099 3 1 1 80 2 211168283 211168489 TGGTGATTGAGAAGCCAGG 60 211168532 211168551 GTGTCCATTCCAGAGTAGCA 60 NA Rattus norvegicus 81 Fez1 ENSRNOG00000006075 ENSRNOT00000008285 3 1 1 80 8 39321976 39321994 CTCTCAGAAGACTGGAGGG 59 39322036 39331493 TTCTTCCTTCTCGTGGATCTC 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980,ENSRNOT00000029284 1 2 2 80 16 71269255 71269275 GTCTTCCAAAGATCTGGTGTC 59 71267792 71269215 CGGTGTATACACTTCTTCGAG 58 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595,ENSRNOT00000073847 2 2 2 80 2 49102697 49105156 TCTGCAATGGGTCATCTCC 60 49101686 49101705 GGAGTGTGCATGAACTTCAG 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 2 2 2 81 8 130768289 130768307 CAAGCTGTGGATCTCTTGC 59 130768350 130792987 CTCCATATGTCTACTGCAGGG 60 NA Rattus norvegicus 81 Fst ENSRNOG00000011631 ENSRNOT00000015680 2 1 1 80 2 46538831 46539702 ATCTTGCAACTCCATCTCG 58 46538769 46538787 GTGGAAGAGATAGGGAAGC 57 NA Rattus norvegicus 81 Dbndd2 ENSRNOG00000014571 ENSRNOT00000019688 3 1 1 89 3 160936349 160936369 TTTATTGACCTTGCGGATCAG 59 160936420 160937845 GTCATCCACTCCAGACCTC 59 NA Rattus norvegicus 81 Mthfs ENSRNOG00000013229 ENSRNOT00000017879 2 1 1 87 8 96569001 96569021 TACTTCCCAAGACATCTTGGA 59 96569070 96611997 ATGAGGTCAAGTCCACCAG 59 NA Rattus norvegicus 81 Cdhr1 ENSRNOG00000013330 ENSRNOT00000018630 1 1 1 80 16 14333169 14334920 TCGTTAACCTTCAAGCTCC 58 14333107 14333126 AAGCTGGATCACAATGTCTG 58 NA Rattus norvegicus 81 Cdhr1 ENSRNOG00000013330 ENSRNOT00000018630 2 1 1 80 16 14333168 14334920 TCGTTAACCTTCAAGCTCCT 59 14333107 14333126 AAGCTGGATCACAATGTCTG 58 NA Rattus norvegicus 81 Zfp462 ENSRNOG00000032048 ENSRNOT00000047225 2 1 1 80 5 71752897 71752915 CCATGTTTACCCGAGAGGA 59 71752959 71756054 TATGGCGATCCAAGTTGTG 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 3 3 8 81 20 4482894 4482915 CAAATTCTTCCTCTATGGCCTC 59 4482957 4483254 AGCAGGAACTGGATCTGTG 59 NA Rattus norvegicus 81 Pbx2 ENSRNOG00000000440 ENSRNOT00000082667 2 1 1 94 20 4359912 4359931 CTACTCCCACCTGAGTAACC 59 4359987 4360090 ACCAGTTGGAAACCTGAGAG 60 NA Rattus norvegicus 81 Usp53 ENSRNOG00000014660 ENSRNOT00000066581 3 1 1 80 2 227124449 227126415 TGGTAAAGCCTTCAGTGAG 57 227124387 227124408 TCTTTGCTCTGATGAGATACAC 58 NA Rattus norvegicus 81 AABR07049043.1 ENSRNOG00000047278 ENSRNOT00000014357 2 1 1 62 5 101510718 101510738 CCATGAACGTTCAAAGAAAGC 59 101510761 101510782 TGTTTATGGTAGAGCTTAGCCT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1306227 ENSRNOG00000017581 ENSRNOT00000046174 2 1 1 80 2 52345021 52345044 TAAATAACCTACCTCCAGACAGAC 60 52345081 52346156 GTTGAAGAATTCTGGTTGCCT 59 NA Rattus norvegicus 81 Ptbp2 ENSRNOG00000010827 ENSRNOT00000015036 3 1 1 80 2 223304298 223304317 ATCTGACGAGCTACTCTCAG 59 223296974 223304257 TTACCATTGGCTGTAACTACC 58 NA Rattus norvegicus 81 Rtn4ip1 ENSRNOG00000000279 ENSRNOT00000000304 1 1 1 80 20 48899221 48903686 CGATACAGGTAATGAAGGCG 59 48903729 48903747 CAAGCTTCCTCACAAGCTC 59 NA Rattus norvegicus 81 Rnf26 ENSRNOG00000007720 ENSRNOT00000010134 3 1 1 60 8 48448858 48448878 CCTATGTGGTCAATAGTCTGG 58 48448818 48448838 AGGGAGAAGAAGTTCTGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876,ENSRNOT00000021081 1 3 4 95 2 53300337 53300355 ACATGTTTCCTGGAAGTGG 58 53185920 53233348 CAGAGGAACTTTCCCTCAG 57 NA Rattus norvegicus 81 AABR07070824.1 ENSRNOG00000050216 ENSRNOT00000073726 3 1 1 64 8 85749874 85749894 GACCTATACTTGCTCCATCTG 58 85749830 85749848 CTTTCCGTGCCTTTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr1l1 ENSRNOG00000006730 ENSRNOT00000008783 3 1 1 60 8 133127536 133127557 TTACACTTCTCTTCTTCCTCCT 58 133127497 133127515 AAAGCAGAAACAAAGGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909911 ENSRNOG00000048426 ENSRNOT00000072213 2 1 1 60 20 8486497 8486517 ATCGTTTCCAGATGAGAATCC 58 8486538 8486557 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi6 ENSRNOG00000037079 ENSRNOT00000055867 3 1 1 80 5 159242570 159243380 ACGCCTATGTGGAGAAGTG 60 159242508 159242528 TGATGAAGTCATTGTCCACCA 60 NA Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 3 2 2 95 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697024 74697042 AGGTAGTGGAAACCCACTG 59 NA Rattus norvegicus 81 AABR07070689.2 ENSRNOG00000060888 ENSRNOT00000057689 3 1 1 60 8 80663066 80663084 GAGACTCAGCACTGAAACG 59 80663106 80663126 TATCGTTCCTCAAACTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam206a ENSRNOG00000010532 ENSRNOT00000014053 1 1 1 80 5 73556310 73556328 TTCTAACAGAGCTTGCACC 58 73556367 73556510 GACCTCTAATACAGCTAGATATGG 58 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 1 3 3 83 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155171 155189 AAAGACAGCCAAAGGTCCA 60 NA Rattus norvegicus 81 Olr1691 ENSRNOG00000047094 ENSRNOT00000052186 3 1 1 60 20 794742 794761 CAGTTCTTCTGTGATGTCCC 58 794701 794722 CTCCAACGTAATCATTAGAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550306 ENSRNOG00000047596 ENSRNOT00000071825 3 1 1 81 3 151548758 151548849 CATGGCTTTCAGGATGAATCAG 60 151548698 151548716 ACAGATGAAGGGTCCTGTG 59 NA Rattus norvegicus 81 Eif4ebp1 ENSRNOG00000012582 ENSRNOT00000016885 2 1 1 163 16 68956855 68956873 TGATGGAGTGTCGGAACTC 59 68955318 68956728 CTGTGACTCTTCACCACCT 59 NA Rattus norvegicus 81 LOC102552669 ENSRNOG00000022257 ENSRNOT00000029077 3 1 1 60 5 154976435 154976453 GTCAAACAGGAGAACAGCT 58 154980284 154980302 CCATGGTTGTTTCTGCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891,ENSRNOT00000020181 2 2 2 80 16 71026694 71026714 ACTTTGAAATCACTGTGGACG 59 71026755 71026994 CCTGAAGGTTACCTAAGGGC 60 NA Rattus norvegicus 81 Aadacl3 ENSRNOG00000026613 ENSRNOT00000033150 1 1 1 84 5 162330241 162330837 TCAGTTGGATACAGAAAGTCTC 58 162330882 162330900 ATCTCAGAAAGTGGGTGGT 58 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 1 2 3 80 3 150818768 150820645 AGCCATCAAGTTAAAGGAGC 58 150818707 150818730 GTTGGATAGGACTTGAAGATAGAG 58 NA Rattus norvegicus 81 Rbm39 ENSRNOG00000049814 ENSRNOT00000065729 2 1 1 80 3 152242759 152245557 TAGGAAAGGTTCGAGATGTGAG 60 152242700 152242719 CAACAAACTCCACATAGGCG 60 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 2 2 2 91 16 80751529 80751549 TGGAAAGAAGCAACATCTCTG 59 80751601 80753103 CGTACGTTAGTTCCTTTGGA 58 NA Rattus norvegicus 81 Defb21 ENSRNOG00000023154 ENSRNOT00000031613 2 1 1 91 3 148047687 148048770 TGATCCCAGACTATAGTGCTG 59 148048822 148048841 TGTTTCCATGACCATTTCCC 59 NA Rattus norvegicus 81 Plekha2 ENSRNOG00000038365 ENSRNOT00000022097 1 1 1 80 16 71756349 71756367 TGCAGCTGACTTACATCTC 57 71762674 71764424 CATTGATAACGAAGCAGAATGG 58 NA Rattus norvegicus 81 Cln8 ENSRNOG00000012565 ENSRNOT00000016756 3 1 1 184 16 79831877 79838175 GAATGCAGGTTGAGGATGG 59 79831711 79831729 AGGAAGCATAGTCCAGGTC 59 NA InUTR Rattus norvegicus 81 RGD1559708 ENSRNOG00000012174 ENSRNOT00000016204 2 1 1 60 16 22410845 22410865 GAGACAGACACCTATAGAGGA 58 22410805 22410823 CAGCCTCAGCTTTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm2d2 ENSRNOG00000016559 ENSRNOT00000022425 3 1 1 80 16 71809181 71809610 CTTTGCTCTTACCTACCCGA 59 71809120 71809138 TTCCTGGTATGCAGTTGCA 60 NA Rattus norvegicus 81 Wfdc6a ENSRNOG00000042526 ENSRNOT00000037518 2 1 1 80 3 161037635 161039109 CTCCGGGAAGACATATGCA 59 161037573 161037594 ATCTTCATTATACCACCAGCGT 60 NA Rattus norvegicus 81 Wfdc6a ENSRNOG00000042526 ENSRNOT00000037518 3 1 1 81 3 161037634 161039108 TCCGGGAAGACATATGCAG 59 161037571 161037593 GTATCTTCATTATACCACCAGCG 59 NA Rattus norvegicus 81 RGD1561928 ENSRNOG00000031879 ENSRNOT00000042609 2 1 1 60 16 61131058 61131077 TCTGTGTATGCTCACTTCCC 60 61131097 61131118 TTTCAACCAAAGACCCATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erich2 ENSRNOG00000056087 ENSRNOT00000077551 1 1 1 80 3 56829390 56829408 CAGCAACAACGAAGACGAC 60 56829452 56835009 GCTCTCAGGAATTCTGCCA 60 NA Rattus norvegicus 81 Arhgef10 ENSRNOG00000012561 ENSRNOT00000073971 1 1 1 80 16 79751814 79752262 GCTATCAGAACTTAAACCAGTC 57 79751755 79751773 TCGCATCTTCTTTCCTCAG 57 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 3 1 1 83 16 83358452 83381203 CTATATGGGACACCGCAGG 60 83381249 83381268 AGGTAAGGATAATAGCGGCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07054352.2 ENSRNOG00000050088 ENSRNOT00000071869 2 1 1 85 3 149556826 149556846 TCAACGGATTTCTGAACACTG 59 149556150 149556782 GTGAAACTGTGGACATATTTGG 58 NA Rattus norvegicus 81 Phf20 ENSRNOG00000019948 ENSRNOT00000027067 3 1 1 80 3 152338948 152338966 AGAGTCCACAAGAGACCCT 60 152339008 152343780 TTGAATCCACAGCAGTAGGAG 60 NA Rattus norvegicus 81 LOC684871 ENSRNOG00000049811 ENSRNOT00000072459 1 1 1 60 16 72389002 72389021 AAACATAGACCAGGAGTCCC 59 72389044 72389062 CTCTGCCTTCTTGTCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb51 ENSRNOG00000038130 ENSRNOT00000058034 2 1 1 90 16 75557955 75558545 GTACTGCACGCTATCACCA 60 75558599 75558617 CACAGTTTGGTGTTCCCTG 59 NA Rattus norvegicus 81 Defb51 ENSRNOG00000038130 ENSRNOT00000058034 3 1 1 90 16 75557956 75558546 TACTGCACGCTATCACCAG 60 75558600 75558618 TCACAGTTTGGTGTTCCCT 59 NA Rattus norvegicus 81 Dpm1 ENSRNOG00000010993 ENSRNOT00000016150 1 1 1 80 3 164969140 164969159 AGGCTACGTCTTTCAGATGG 60 164968213 164969100 ACAAATGAAATCGGAACCTCAC 60 NA Rattus norvegicus 81 Zfp804a ENSRNOG00000038004 ENSRNOT00000043974 1 1 1 88 3 69549765 69549784 GTGAACTTTGTGACAAGCAG 58 69549834 69567575 TTTGAGCCTCTGCTTATGAG 58 NA Rattus norvegicus 81 Zfp804a ENSRNOG00000038004 ENSRNOT00000043974 2 1 1 89 3 69549764 69549783 TGTGAACTTTGTGACAAGCA 59 69549834 69567575 TTTGAGCCTCTGCTTATGAG 58 NA Rattus norvegicus 81 Ptpn1 ENSRNOG00000010574 ENSRNOT00000014309 3 1 1 80 3 164710179 164710197 TGTGAGGATGAGGACATCC 59 164710240 164711309 TTGACTCATACTGCTCATGC 58 NA Rattus norvegicus 81 Pcid2 ENSRNOG00000025222 ENSRNOT00000044085 2 1 1 80 16 81763124 81763144 CTCTCCAGAAGAGAAATGCCA 60 81763183 81764061 GCGTAGGTACACCTTAAATGAG 59 NA Rattus norvegicus 81 Nr1h3 ENSRNOG00000013172 ENSRNOT00000018154 1 1 1 80 3 80011160 80011694 AGAGCCTACAGAACTTCGT 58 80011098 80011116 CATACACTGCATAGCTCGT 57 NA Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 2 2 2 81 16 82999370 82999390 AGCTGCTACCATGAGATACAC 60 82993845 82999328 AGAGATGTCACAAACTGCGA 60 NA Rattus norvegicus 81 Fam83d ENSRNOG00000015794 ENSRNOT00000021308 2 1 1 108 3 155269748 155269766 TGTCGAGGCTCATTTCCAG 60 155269837 155281685 TACCACAGCAATCACCTCTC 60 NA Rattus norvegicus 81 AABR07036436.1 ENSRNOG00000053151 ENSRNOT00000089144 2 1 1 87 12 43252192 43252210 TGGCAGATAACTGTCACTG 57 43252260 43252662 CTGAGGAGTCTGAAGTTGTG 58 NA Rattus norvegicus 81 LOC685790 ENSRNOG00000027980 ENSRNOT00000034303 2 1 1 83 X 73023332 73023351 TATTCCATGAATGCAGGCAC 59 73023394 73024032 AACACAGACCTCATTCATATCC 58 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152 1 1 2 123 2 178272437 178274175 ACTGGAAGTAACCTAGCACAC 60 178267468 178267486 ATGGGAAGGGTGTGATCAG 59 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000077883 3 1 2 81 2 212580902 212582935 TCTGGTCAGTGCTAAGTCC 59 212582980 212582998 GAGAGCTCCCGCATATCTC 60 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578 3 2 3 88 3 3832188 3832442 CGAATTTACCCGAAGGAGG 58 3832118 3832136 TATTCCAGGCCATATCCCA 58 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669 1 1 3 80 3 3830535 3830925 AAACAGAAATGGTGAGGACG 59 3830474 3830492 ACTCCAGGTCATGGAAGTC 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 1 2 3 80 2 219090125 219090143 AACACTCTTACCTGTGCAC 58 219087873 219090083 TAGGGAATGAGTAGATGTCCA 58 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 3 2 2 80 2 143929228 143929869 GATATGTCGTCCCTAATGTGGA 60 143929169 143929187 CTTGAGCCTCTTCTCCAGG 60 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 1 1 5 80 X 26443969 26443987 CAGAGCATGATAAGGCAGC 59 26448512 26450398 GGTTTCCATGTTAAGCGGA 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176 2 1 5 120 X 26444635 26444653 ATTCTTCCTGAGCTGCCTC 60 26448509 26450396 TTTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962 3 1 2 88 15 38113513 38115028 GGGTGAATACATCAGAAGTATTGG 59 38113448 38113467 ATTCACTGTCCAACAAACGG 59 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 2 2 2 82 3 110554833 110554853 ACTCACTTGGTACTTTCAGCA 60 110554689 110554790 TACTATCCGTTTGGCCTTGG 60 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000076389 1 1 2 167 2 30181889 30187547 AGGATTCATGGTTGGTAAAGAC 59 30181377 30181764 AATCTTGGACTATATGCTCTGC 58 NA Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000082180 2 1 2 98 14 79461202 79461902 AACATCAGGCCTTCTCCTC 59 79461122 79461140 TGTCTTTGGCTCACAATGC 59 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000091612 1 1 3 102 15 42664304 42664322 ATGCTCAACACCTCATCCC 60 42664388 42664407 GAGACCCGAAGTACTGGTC 59 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 1 2 3 85 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657910 42657929 GGTCTTTATGTGCTTCACCC 59 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 1 2 2 80 17 6799338 6799357 TCTGAAATGTTTGAAGCCGA 58 6799398 6802162 TTCATAATCCTGTCTGTGCTC 58 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 1 2 2 80 2 43290923 43290942 AACGCTACGATTACTTTGCT 58 43290985 43291083 CCATATAGTCCGTAACGCC 58 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000086721 3 1 2 81 X 29639645 29639665 CAAAGAACCATCAGTACCGTC 59 29621489 29639602 CAGCATTCGAAGCAACCTG 60 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627 2 1 2 80 X 35721927 35771516 GATCTACAGACCCAGATTCCC 60 35771557 35771576 CTCGACGTTTATGCAACCAG 60 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456 3 1 2 80 X 31124185 31124348 TAAATGTCAGCAGCTATGCC 59 31124124 31124145 TCAGTGTCTTTACAATGAGGTC 58 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023605 3 1 3 87 2 189440267 189448848 TGACTTGGAAGAGCGTCTC 60 189448899 189448917 GTCACAAAGACCATGCAGC 60 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076 2 1 3 80 2 189423743 189424629 AGAAAGAAGCAAACAGCTAGAG 59 189424669 189424688 TACTTGTCCAGCTCATCCTC 59 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000002719 1 1 2 80 11 51054722 51057517 TCTATTTGAAGGGTGAAGATGC 59 51054663 51054683 TGAGACTATGTCTTGCAGGAG 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 1 2 2 80 2 263401296 263476779 GAGTGGTCGTGAACTTTGC 60 263476822 263476841 ATCTTATCAGTCCACTGCGT 59 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 2 1 2 60 X 58181491 58181510 CAACATTCAGGCACTAATGG 57 58181268 58181286 AACTGATGCATTGGACCAC 59 NA DesignNoJunction Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010 3 1 2 80 X 40277915 40277934 CTTACTTCTTCGCTGCAGTC 59 40277975 40281546 GAACTTGTTCCCTAATGGCTG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817,ENSRNOT00000002220 1 2 7 107 11 46253393 46288169 CAAGAGTCAAACCTGCTCC 59 46248785 46248803 TATGCAGGGATCCCTTAGG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817 1 1 7 80 11 46244235 46245033 GACAACAATAGTGCCTTTAGAG 57 46244176 46244196 TGTAGTTCCTCTTCACTAGGT 58 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 3 2 2 81 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316595 22316614 TTCGATCTTCAAACTGTGCC 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 1 1 1 60 1 99864154 99864174 TTCATCTTCAGTTTCCTCAGC 58 99864679 99864699 TTCAGTCTGAGGAGAATTAGC 57 NA DesignNoJunction Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 1 2 2 120 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079892 111079910 AAAGACATCGGTATCCGGG 59 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355,ENSRNOT00000085462 3 2 2 80 16 19047170 19047188 ACATGGTGGCAGTATTGGA 59 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608 1 1 2 95 2 188227449 188227473 CCATCCTCATTTCCAACTATAATCC 60 188226039 188227398 CTGTTGAAGCTTTCTCATGCT 59 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608 2 1 2 96 2 188227449 188227473 CCATCCTCATTTCCAACTATAATCC 60 188226038 188227397 TCTGTTGAAGCTTTCTCATGC 59 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012295 3 1 2 91 8 63379309 63419557 TCAGAACGAACCAAGAATTGTC 59 63419608 63419627 AGCTGGAAGTGAGGTTACAC 60 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 2 2 2 83 9 85483678 85487677 GAGAAGAGGCTCCTCAGTG 59 85483613 85483634 CCCACATCTGCTTTATATTCCA 58 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963 2 1 2 84 9 85495455 85499667 GGGCTGTAATGGAATTTCAC 57 85493035 85493053 GACACTCGGTTCTGATGAG 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 1 2 2 80 17 38996322 38998090 CGAATGACCTCGTTTGAAGAG 59 38998131 38998150 CACTAGATGTTGCAGAGGGT 60 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 2 2 2 80 3 130045422 130048048 TCCCGGAATACAGAACTTCG 60 130048088 130048109 CCAAGTATCATGACCAAATGCA 59 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591 1 1 2 80 10 18082220 18082238 CTCTTCCCAAAGTGGAAGC 59 18081283 18082178 GATCTTGAATAGCCTCCTGGT 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000022705 3 1 5 90 17 39413207 39413227 CGGAAGCATTTAACAGTGCT 59 39413276 39414093 GAGAATTGGTTCTGGAAGAACTC 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 3 3 3 80 8 109511343 109511362 GAGGGAAGAATGAGCTATGC 58 109502105 109511301 ATACTCAATGCTGGTAGGGT 58 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438 3 1 2 95 1 71251638 71251656 AAGAGGAATGGCAACAGCT 60 71251715 71253348 TAGGAATTCCCAGCGACAC 60 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 1 2 2 80 17 18415769 18417038 GTTAGCATCACAACGTCCA 58 18415707 18415726 CAATGTGATGAAAGCAGGGA 59 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 1 2 2 80 12 2095646 2095665 TATTGCGAGTACCTTCGTCC 60 2095706 2096449 ACCCACATCATAGATCTGGTC 59 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 2 2 2 112 3 146981133 146983297 CAGATTGCACTTGCAAGCT 60 146983368 146988572 ACTCTATTATCACTAGGAGCTGTG 59 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 3 1 1 110 6 6180545 6180566 AGCTGTATCTTATCTGGACCAG 59 6180639 6180657 ATCTCTGTGACAGTGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 2 3 3 80 X 37983843 38026659 ATAAACGAGGAGAGCGACG 60 37983781 37983799 TCAGCTCAAGCTCATCGTC 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438 2 1 3 83 X 37970202 37970221 CTTCATCAAGGAGCTGTCAG 58 37958677 37970159 GTTTCTCTTAAGCTTGACTTGG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000074002 2 1 10 93 2 231335941 231335960 CCACATTCGCCAACTATCAC 59 231335865 231335886 GGAAACTTGGCTATCGACTG 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692 2 1 2 183 17 16242409 16242428 CATCGACATTTACCACTGCC 59 16245931 16249313 CACCACATCTTCAGCACTG 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 3 2 2 80 13 96233890 96233911 ACTGTGAGACAGAAGATTATGG 58 96233318 96233852 CTTCATCAGTCTCAAAGTTAGC 57 NA Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 1 2 2 80 19 26080492 26080641 CTGAAAGTAGCAGACTCAAAGAC 60 26080434 26080452 AAAGTCTCCGTCCTCTTCC 59 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 1 1 1 79 1 67373387 67373405 CTGGGTAAAGGGACCTACG 59 67372316 67372334 TTCACAAATTTCAGGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924 1 1 2 82 X 34630171 34661123 CTCCTAACGTCCCACTCTC 59 34661169 34661187 GGAACATTGTGGATTGGGT 58 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000079947 1 1 3 127 4 157251835 157252563 GTCTATAAAGTGGTTTCACCGG 59 157251729 157251747 CTGAGAGGGAGAAGTCACC 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849,ENSRNOT00000088647 2 2 4 92 9 117651351 117659910 CTGAGGAGACTAAACAATCTTCTG 59 117659961 117659979 TGAACTCTGTGGGTTTCCT 59 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000030161 1 1 2 83 12 19515801 19519214 CATGGAAGAGGTGTTCTGC 59 19519261 19519279 TCTTCAGAGACAGGATGGG 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512 2 1 2 92 17 42926499 42926520 TTCAGTTTGTCTCTGACAGC 58 42926426 42926444 AAGCACAGTTGGTTTGGAG 59 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 2 2 2 87 1 247871968 247876370 ATATCACTGCTGAAGAGGCC 60 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399 1 1 3 80 7 18564681 18570340 CTCACAGAGTGGCTAAAGG 58 18564619 18564638 GATAAACACAAAGCACACCA 57 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399 3 1 3 80 7 18570383 18570401 CAACACCAGCTACTGTGAG 58 18564680 18570340 TCCTTTAGCCACTCTGTGAG 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 2 2 2 80 15 28548762 28549194 CTTGTGTTATCAGGAGGAGC 58 28549237 28549255 CTCTCCATCGTCTCTTCGT 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000618 3 1 2 82 20 5975614 5975632 TGGATATTTGGTCCGTGGG 60 5975674 5983760 CTGATCAATATGGTCTGTACCAG 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000036654 2 1 6 81 4 157538801 157538819 GTCAGGCATCTGTTACCCA 59 157538864 157539361 ATTACCAAACCAGGACCCG 60 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 2 2 2 89 3 7194090 7194919 GTGTAACAAGGTGTTCTCCAC 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 2 3 3 80 10 77769638 77769657 GAGCATTGTTTCCACATGTG 58 77769700 77771214 ACGGAGATTTAACCATGGG 57 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000059494 1 1 2 84 17 43464379 43464510 TCAAGAGGTACACTCGCTG 59 43464557 43464576 ATATGAAACCACAATGGCCC 59 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188 3 1 2 80 11 47193056 47193077 AGTCTTCTGCTATCTGTTTGTG 59 47193117 47218322 TCATGGTCCAAGTACTCCAC 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000012993 1 1 4 80 15 51915323 51915347 CACAGAGATGTTGGTCAATATTCTC 60 51904472 51915290 GAAATGTAGTGATCTTCCTCTTCG 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100 2 1 3 109 1 140846360 140846380 ATATGAGGAACAAGGAACCAG 58 140845774 140846187 CTTGAGTCAACCCATAGCG 58 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291 1 1 2 80 4 174758957 174760292 GAAATGGATCTCACTGTGGTC 59 174760332 174760352 ATTCATCAACTTCTGCCACTG 59 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 3 2 2 80 17 18447484 18454069 CATTCAGATCCAGGTAATGGG 58 18447424 18447444 TCTTTACTGAGGTACAGGTGG 59 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332 2 1 2 86 8 64494773 64494791 TAGGAAGGTCCTGGGAGAG 59 64494841 64495726 ATCTCATCAAACCTGCGGA 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 2 1 1 128 3 155103568 155103586 CGACAAACCCAAGATCACG 59 155105764 155105783 AAGATGATGAGGAACAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000017947 1 1 2 85 16 83019512 83019530 GAGGAAGACGCTCAGATCC 60 83010201 83019464 TTGCGTGAACTTGAGTTCAG 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 3 2 2 83 3 44084995 44085013 CTTTGTTGTTCACCAGGCC 60 44081637 44084948 CATGGATGCCCTTCTTGGA 60 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492 3 1 2 102 5 115343834 115343852 AGATTTGGGTTACCGAGGT 58 115328045 115334701 TTTATTCTTTCCTGCTGGCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 1 2 2 80 19 23937395 23937793 CTTAGCATGTCAACACGCTC 60 23937334 23937353 AGCATCATACCCAGAAGCTC 60 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550 2 1 2 83 1 88955288 88955307 TTGGTCACTCATGGACTAGC 60 88955423 88955445 TCCATAAAGCTCAGAACATGC 59 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000084505 3 1 2 80 15 39838984 39869927 CCTTCCATGTCTTTAAGGCTC 59 39869967 39869987 TATCTGTACCTCCTACAGTGG 58 NA Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 1 2 2 80 19 30894736 30897989 GTCCAACGAAGATCAGAATCTC 59 30898028 30898048 TTATCTCCTTTGGGTTTGGTC 58 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000010789 2 1 2 138 5 24489263 24491815 TTGTGTTGAACATGCTGCT 59 24488895 24489165 CTAATTGCCCATCTGTTGTAGAG 59 NA Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 3 2 2 80 3 7053733 7053751 GCAGAATGGAAGGAAGGTC 58 7053795 7054271 ATCCTGCTCTGGAAATCGT 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 3 1 2 82 10 15242603 15251705 CAGATGCAGGTTCTCAAGAC 59 15251748 15251768 AATTCAGCTTCCTTCTTCCTG 58 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997 3 1 3 82 X 62491680 62491700 CCTTCATTTCTCCCGAAATGG 59 62452712 62491639 ACAGGGACTTGTCAGAATACTC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 2 2 5 81 16 19727744 19727762 AGTCCTGTCACTCGAAGTC 59 19727807 19730706 TATGCAAATCGCGGTACAG 58 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654 3 1 2 84 1 189614747 189614765 GAACATACATCCCGAACCA 57 189614811 189615874 TTTCAGAGTCCTGAAGATGTG 58 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000042713 1 1 2 80 11 38677457 38678003 ACACAATATAATGCCGACCT 57 38677396 38677416 GCTGACATTTCCTTCTTTCTG 58 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000024313 3 1 2 80 18 29500805 29500964 ACATCCTATTCAGGCAGAGG 59 29500744 29500765 ACACCAATAAAGGTTACAAGGC 59 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 1 2 2 80 11 57247457 57254070 CTAGTTCACAGGAATCTCCC 57 57254113 57254131 TGTGATGATGTTGACACCC 58 NA Rattus norvegicus 81 Sart1 ENSRNOG00000020475 ENSRNOT00000027811 2 1 1 80 1 220764257 220764275 CACCATCCTGGATGAAGAG 57 220763869 220764214 TCCAACAGTCCTTTGTTCTG 58 NA Rattus norvegicus 81 Mir3597-3 ENSRNOG00000035580 ENSRNOT00000053703 3 1 1 61 1 141229437 141229456 GCACGCAGAAGTTGTTAGAG 60 141229395 141229413 CACAGAGCCGTCATAAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361103 ENSRNOG00000000957 ENSRNOT00000001265 2 1 1 82 12 9997888 9998363 GTAGACATCAAGGGAATGGG 58 9997825 9997844 ACATTGTAGACTCTTCCGGT 59 NA Rattus norvegicus 81 Pabpc4 ENSRNOG00000015642 ENSRNOT00000056592 1 1 1 80 5 140983300 140983322 CAAGTCTATAGACAACAAGGCAC 60 140983360 140985328 TCATCACAGACCACCTTACAG 60 NA Rattus norvegicus 81 Stx1b ENSRNOG00000019193 ENSRNOT00000026063 3 1 1 80 1 199262294 199262495 GAGTTCTTTGAGCAGGTGG 59 199262232 199262251 GTGCTGTTTCTTCACTTGCT 59 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519 2 1 2 90 9 61974724 61974742 AGGATGTTGTCAATTGCCC 58 61972833 61974670 TGATTTGTTGTTTGCGTCG 58 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 1 1 1 147 10 103873188 103873206 ATCTGGAGCTCCTCAAGGA 60 103870582 103870600 TCACACTTATCCGGGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 3 2 2 81 10 37069781 37071919 GCGAGAAAGGGATCATGGT 60 37071964 37071982 TGGTCCTCGCACATAACTG 60 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396 2 1 2 125 1 221261126 221261144 AAGATACTCCAAAGCGTCG 58 221260411 221260906 TGAAACTATTGTCACAGGCA 58 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000017914 3 1 2 80 1 218433538 218434499 AATCTTCACCTTGATAGGAAGC 58 218433479 218433498 ATTAGGTAGCCTCGGAACTG 59 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999 3 1 2 88 10 38949859 38949877 GAGTTTGCGTCAGTCTCTG 59 38949928 38951879 CAGAACGCTTTCTTCTACCG 59 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 3 2 2 80 17 45439905 45441047 TCTTTCCTAAAGAGCTCCTGC 60 45439845 45439863 GACCTTCATGGGATCCCAG 60 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000078048 1 1 3 134 5 151072728 151072747 ACATGTATCGGAATCCGGG 59 151061191 151061210 GCTTAGTTCCAAGTTGGCTC 59 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000080155 2 1 2 171 7 98835950 98849308 AAAGGGAGAGGTGACATCC 59 98834581 98835816 TCTCTTCCTCAATCACTGGC 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000001011 1 1 9 102 20 2083571 2083646 GACAACAGATTGGCTTGGG 59 2083038 2083056 TATGCACACCACCAAACCT 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000086937 2 1 9 109 20 2083572 2087964 AGCACTTGAATTGGCTTGG 59 2079777 2079797 CTGGGAGTTGTAATTCTGGTC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000077991 3 1 9 100 20 2078871 2079732 CATCTACATAGTGGTGCTATAGTG 59 2078794 2078814 GACTTTCTCAGGAATGAAGCT 58 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408 3 1 2 80 17 45510501 45510521 GAACGCATTCCATTCAAGCA 60 45510561 45510583 CTGAATTGTCAGACCACAATAGG 60 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 2 2 2 80 9 10016762 10016880 CCAGGGAGATTCAATTGGT 57 10017817 10017837 GGAACCCTATACTCTTCTGTC 57 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000087894 3 1 4 80 1 267607682 267607700 CCGAGTCTACAGCATGAGG 60 267607744 267627766 ATTTCATGCCGGATTCCCT 60 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 3 2 2 80 19 667717 667736 ACCATAGCCATACTCCATGG 59 667776 668222 TAGGAATTCGTCCATTTGTCTC 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 3 2 2 80 3 46305038 46305619 GATTCTGAATATCAGTCTGCCTC 59 46305655 46305677 AGTTATCTCAGACTCACTGTACC 59 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 1 2 2 80 16 19512856 19512875 TGATGATGCCCTTAAAGCCA 60 19512917 19515087 CCATGTTCATCCTTGCTCAG 59 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 1 3 3 87 17 47320790 47320836 AGAAGAACCTGACCCTTTGG 60 47320882 47321918 CATATACTCTTGCAAACTGTCCC 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090 1 1 4 97 17 27506902 27506923 TCCTCAGGAAACTTTGAATCAG 58 27523797 27523819 CATAGCTTGTATCTGAGACCAC 59 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 2 2 2 80 8 48667905 48667924 GGAGTCTGGAGTCTAGATGG 58 48667765 48667862 ATCTTCTTGCTGAACAGGG 57 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000056694 2 1 5 116 12 52397971 52398096 TTTACTTCGTGTGGGTTGC 59 52398176 52398194 TGGTGATGATGGAGCTCTC 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661 1 1 5 118 12 52400303 52400528 GAAGTTCGACAAGGTGGTG 59 52400610 52400628 ATCAAAGTTGGGCCAAACC 59 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464 3 1 2 81 4 157234380 157234399 CACAGAACCGGATCTATCTC 57 157234443 157235038 TTAATGAGGCTGTCACGAG 57 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435 1 1 2 80 10 15630018 15630036 GTTGATGACCAGGATGGTG 58 15633595 15637126 AATAGCATCCGAGAACCCT 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729 1 1 5 80 13 47415478 47421227 CAAATGGACATAGGGAAGTGG 59 47415418 47415437 ATCAGGAGAGCAAAGTGAGG 60 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 1 2 2 80 5 152378285 152378305 GTGGATCAGCATCTTGAACAG 59 152377790 152378247 GAGATATGTTTCCTCTGCTTGTC 59 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102 1 1 2 148 17 48444481 48562772 AAAGGTCCTCCAGAAGCTG 59 48394099 48399201 CCTGCATACCTTTGATTGCC 60 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216 2 1 2 100 17 47389994 47390013 AATCATGTGTTATGAGCGGC 59 47299179 47386893 GATGGACATCTGTGGACCT 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000080694 1 1 4 80 19 41163268 41163441 GTAGCCAGGTCTTACGGTC 60 41162214 41162233 ACCAGTTTATCAGAGGACCC 59 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 1 2 2 80 8 111564425 111564445 CACATTCCTCAACAAGTTCCT 59 111564486 111565552 AGATTTACAGCACCGATGAG 58 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 2 2 2 80 8 111564425 111564444 CACATTCCTCAACAAGTTCC 57 111564486 111565552 AGATTTACAGCACCGATGAG 58 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000012162 3 1 2 82 8 111567383 111567403 CAAGCTCAGAAGCTTCTAAGG 59 111569648 111569668 CATGAGCCTGTCTTGTGAC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 1 2 2 80 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860 2 1 2 80 2 231871190 231871209 CTCAGGCAGTAATGAATGCA 58 231870998 231871148 GCTCATGATCACCAGAAAGG 59 NA Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 1 2 2 82 14 46025130 46025150 CCTACCAACAAGACCAAAGAG 59 46025194 46027210 TTTGTGACTCTGAACCTGC 58 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 1 2 2 86 9 71265631 71269652 GCAGTATATTGCCATTACCCA 58 71269700 71269718 ATGGTTAATGTCTGCAGGC 58 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 1 2 2 80 2 164603256 164603274 GGGAAGACGACGTTAACAG 58 164603316 164604898 TCCATCTTTACCTTTCACCTC 57 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866 2 1 2 100 14 85271593 85272701 ACAGCCTGATTGGAGACAG 59 85272765 85272783 GTCACTTAAGCCACTGCTG 59 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775 3 1 2 87 7 75410597 75410615 TTACTGGCATGCTGTTGGA 60 75410218 75410546 GCTTCATCGACCTTTGAGC 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108 1 1 2 80 20 8325319 8325338 CACCTGAGATTTCCAAACGA 58 8325378 8327465 TCTTCATTGTTACCGTATGCAG 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000089894 3 1 2 100 10 104141685 104141703 GATGAGGAGCTCCTCTGTC 59 104141045 104141301 GATGGTTCATTCTGGAACAGG 59 NA Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 2 2 2 80 16 19767945 19768297 TGACTACGAGCTTAAGTACCC 59 19768338 19768357 TCGTACTGGTCCTGAAACAC 60 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 3 1 1 77 X 152196370 152196389 TAGAAGACCTGGAAGACCCA 60 152196559 152196577 GCAGAAAGTCCACCAAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 3 2 3 92 4 150520267 150520286 TTTACGTAGGAGCTGTGGTG 60 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 2 2 2 86 20 19352584 19357847 GACTATGTTAGAGATCACTATGGGA 59 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 3 1 1 61 11 65960425 65960445 GTATCTGCTTCAGTACAACGA 58 65965160 65965178 GAATCAAGGCAGGATCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 3 2 2 80 10 82391005 82391024 AGCTGGTAGCGTTCTTATCC 60 82390753 82390965 TCTTGATGAACCTGGAATTGTC 59 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 1 2 2 80 13 44629160 44629178 CCGTCGAAAGGAATCAACC 59 44629219 44629679 TGAGTTATATCAGCAACGTCTC 58 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129 2 1 2 80 11 67082200 67082219 TCGTCAAGACATGTGTAACC 58 67094344 67101788 GAACAGCATCTGAGAGCAG 58 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 3 2 2 80 15 103244247 103244266 CTTCGAAATCAGGATGACCG 59 103235742 103244204 ACCAGCAAAGTTTCCTGTG 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171 3 1 2 80 10 29151020 29151038 TGGACCAGTACAACGTCAC 60 29151081 29174564 CCTCAAACTTACTTGCCAGC 60 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 1 3 3 80 4 7133353 7133592 TACCATCAGCACTTACAGGA 58 7133635 7133653 CTTGATCTCTGGGTAGCAC 57 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000066691 1 1 2 80 1 219309827 219310233 CATATCTGTATCTCCTTCGCC 58 219309767 219309787 TTTCAAGTAACCAGGGAACAG 58 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 3 2 2 83 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935391 166935412 GGAAATGTCCTTATGTGCTTCC 60 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 1 2 3 104 2 113833145 113833163 CAGGACACAGAGACAGTCC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000087091 2 1 2 102 14 107795251 107795269 CAGGCCTTGTGAATACAGC 59 107797829 107797852 TCTTGCCAATTCTTTCATCCTG 59 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000087091 3 1 2 150 14 107795203 107795224 TCCTTCTCCTAGGCATAAATCC 59 107797829 107797852 TCTTGCCAATTCTTTCATCCTG 59 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 2 2 2 89 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487489 69487508 GCTTGAGTTTCCAGTTCCAC 60 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 2 3 3 80 15 51815488 51815507 CACGATTCTATAACAGCCGA 58 51815548 51817862 CCGAGTAGTAGATAACCTGTG 57 NA Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 3 2 2 84 16 758331 758431 AACAGATGGTCATTGATGTCC 58 758477 758495 TTGTACATCTTGGCCAGCT 59 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000086232 1 1 2 95 8 114940076 114940095 AGAAGCGGAAATCTCTGCT 59 114939997 114940015 GTTGCTGTGAAGTGGACAC 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607 3 1 3 81 14 86227675 86227693 TTCAATGCAAGGAGGAAGC 59 86221589 86226846 GTAAACTCTTGGCTGCTGAG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 1 3 3 161 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 2 3 3 80 7 63747926 63771622 GCCATTGACTTGATTGACGA 59 63771662 63771683 ATAGATGATTCGAATGTGCTGG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000061644 3 1 4 81 10 1312891 1312914 TAGTTGGAAAGAGAACTCTGAGTC 60 1312779 1312851 TCCGGGTCAGATATTCCCT 60 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 2 3 3 80 17 59714734 59714753 TCAGAAGCTTGATGTGACAC 58 59714796 59727913 GATTCTCGCAACTCATCCC 58 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000058906 1 1 2 80 5 88627236 88627256 CAGAAATGCAGAGACACTACG 59 88601664 88627097 CGATTTCGGTCTGTTTATGCA 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773 2 1 2 80 6 25077615 25087253 TGTGCTTTGCTTGGTACCT 60 25087294 25087315 CTATGAAGGAATCAGTGGTTGG 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 2 2 8 113 13 68703050 68707607 GATGACCCAGATTATGATGCA 58 68707682 68707700 AGGCTTTAATGGTGGTTCC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 3 2 8 110 13 68709342 68709779 GTTCGACTTCAGGTCTGTG 58 68709853 68709871 AACTCCATGAGGGTCACTG 59 NA Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 3 2 2 80 2 198291941 198291961 TGATCAAACTTGCCTCAAGTG 59 198292001 198292409 CTTCTGAACTCTCCACTCCTC 60 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 1 2 4 98 3 112229220 112251001 GACCTCCGGAAATTTGTGAG 59 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000012655 3 1 2 123 4 84424009 84424819 CGATAAATATCTCTTCACTGGTCC 59 84439755 84439774 CAGTATTCACACCAGTGTGG 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 2 2 4 175 15 36823465 36824067 GAAGTCGTTGAGGTCTCTG 58 36825286 36825304 TGTGCTGCTATCACAAAGG 58 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299 3 1 2 107 14 110757982 110758000 CTTGGTTACTGCATGCTGC 60 110755098 110757912 GAGTTCATCCAGCAGTTTGG 59 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 2 2 2 85 1 72639155 72639174 TAAAGACTCTGGAGCCAGAG 59 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 3 2 2 86 1 72639154 72639174 CTAAAGACTCTGGAGCCAGAG 60 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 3 2 2 80 10 43874589 43875321 CAACAAGCCCATTAATGTGTC 58 43875363 43875381 GTGCCAAGTTCACTGTAGC 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 3 2 3 93 11 71128128 71128147 ATCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078463,ENSRNOT00000058735 1 2 11 95 6 99141822 99141840 CTCTTGAGTGGGATCACAC 58 99141898 99142440 TTTCTACATCTGACAGTGCG 58 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524 1 1 2 125 13 34250322 34251489 ACATCCGAGAGGAAATACGA 58 34249215 34249234 CTTTCAAGCACCTCTTTGGA 58 NA Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000080714 2 1 2 104 10 104378469 104378786 AGGAACGTACAGGTCTGTC 59 104378854 104378872 GAACAGATCCCGCTTTAGC 59 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 2 2 2 80 2 78005754 78005775 CCTTAATGGCAACACTAAGCTC 60 78005816 78034060 ACTGGTCTGGCATCTTCTG 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025871 3 1 3 81 18 57755779 57819618 CACTCATGTGCTAAGGTATACAG 59 57819658 57819677 CTCTGGGTCATTGTGTATGG 58 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 1 2 3 80 3 150050950 150058118 CAAAGCTGGAGTATGAACAGG 59 150050890 150050908 GTAGCTGATTCGCAGTCTC 58 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000090009 3 1 2 87 15 84446993 84477269 TGGCAAAGCACAAATGGAG 59 84446924 84446943 TAAGGTCACATTTGGCAGGT 60 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000018515 3 1 2 121 14 81819600 81819618 AGGATGGAGCTGAACTCTC 59 81819784 81828336 CCTGAGTTTAGCTCGTCGT 60 NA DesignRelaxed Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 3 3 3 89 4 125704033 125704051 CACACTGCTGACTAATGCG 59 125694034 125703980 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000051565 2 1 2 80 12 16056078 16058165 CAATGACTCATGAGGCTCAC 59 16058208 16058226 CATTGTTGTCGGAGTCTGG 59 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376 3 1 2 152 7 139686343 139702069 ACCTATTCTTGAAACCGAGTG 58 139707077 139707095 AAGATGCCAACTCGTACCA 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509 2 1 2 91 3 8949320 8949554 TCTTCAAGCACCAGATTGTG 59 8949608 8949626 GATGTCTTCTGCTAGGGCT 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509 3 1 2 91 3 8949319 8949554 TTCTTCAAGCACCAGATTGTG 59 8949607 8949625 ATGTCTTCTGCTAGGGCTG 59 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739,ENSRNOT00000083655 2 2 3 89 X 75291833 75291851 TCTCTAGTCTCCATCTGCG 58 75224257 75291780 TTCTGTAGTCTGGGACAGC 59 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941 2 1 2 156 19 49996741 49996759 CACCTCACTATGCTCCAGG 60 49997945 50000318 TAGGAAGCTTGGCCTTCAG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269 2 1 3 84 15 61847332 61852606 ACATCACCCTTACAGTCGAG 59 61852653 61852671 ATATTGAGGAGCGCCTCAG 59 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242 2 1 2 80 3 92935435 92935456 TGTGAAATTGAGACTGACAAGG 59 92931457 92935396 TTCTTCAACCACTATCTTGGC 58 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 2 2 2 80 1 187803944 187804827 CAACACAGATATTCTGAGCATACTC 60 187803888 187803907 CTCATTCAGCTTCACCTGGA 60 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 1 3 3 80 8 71038935 71039768 AATGGACATTAGGCAGCAG 58 71038873 71038891 GCAATGAGGAGCATCTCTG 58 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 3 3 3 90 20 27176706 27176727 GAACTCTTCTTGAATTCCACCC 59 27176773 27176984 CTTGATTATCCATTCCATCTCTGC 60 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 2 2 2 80 3 48508583 48508602 TGACACTATCTACCCACACC 59 48506648 48508543 GTGAAATAGTAGTCACTCGAGG 58 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000002864 3 1 2 94 9 61000670 61001598 TGGTAGAGGGTATAGAAGTTGAC 59 61000598 61000616 CATTGCAGTGTTCCCACTG 60 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975 3 1 2 82 8 48413175 48413193 CTGTGGGAGAAGAACAAGG 58 48413237 48426006 GCACTCTTTGAATTCATGGTG 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 1 2 4 80 6 99203186 99203206 ATGCATCTGGGTATCATTACG 58 99184559 99203144 TCCTGGATCCTTGAATGCT 58 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232 1 1 2 100 2 233606680 233617124 GCAATTAGAGAAAGATAAGGGCC 60 233617184 233617202 TAAAGTGAGTCCTCTGCCG 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951 2 1 3 109 10 75089428 75089869 AATGTCACAGACGTGTTGAC 59 75089941 75089959 GTTCGATACTTGTCCTGCG 59 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845 3 1 2 85 3 177226655 177229045 TATGTCATCCTCAGGCACAC 60 177229093 177229111 AGCAAGACCAGGGTATCAG 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043 3 1 2 92 5 169576687 169579810 CATTGAAGAGACTGTGCGG 59 169576613 169576631 ATGATCTCCATGGAGCTCC 59 NA Rattus norvegicus 81 Zdhhc23 ENSRNOG00000060348 ENSRNOT00000079423,ENSRNOT00000079521 3 2 2 80 11 61662513 61667171 TGAAGGCTGTGACAGATGG 60 61667213 61667233 CGATCAGAAATCGTATCCGTG 59 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 1 2 2 110 6 1456480 1456498 ACCAGGTTTCTACGTGGAC 59 1452779 1456409 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191 2 1 2 95 4 85561761 85561779 GGACCATTCATTGGGAGTG 58 85561838 85569094 CCTAGGAATCTTCATGCGG 58 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 3 2 2 89 10 104455970 104455990 GCTGAAACTGAAAGAACTCCC 60 104456041 104456441 AGCATCAGGACAGTAGCTG 59 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 1 2 2 80 18 4077878 4077899 TCAGAATAACTCATACGTCCAG 58 4077940 4078976 CTTGCTACAGTCTCTGCTC 58 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 3 2 2 80 11 14254242 14265431 CCTGGATGAAGAAACTGCC 59 14254180 14254201 TGTGATTCACTCAAGATGTCTG 59 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261 2 1 2 82 1 84640144 84640163 GGATGCTACTCAGAAGGTCC 60 84640208 84642222 AAATGCAACTTCCCACCAC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040 1 1 6 80 5 48029066 48029650 AGCCAAACTACGAGGAGAC 59 48029690 48029712 CGAAACTGACTAGCAATGTATGG 60 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 2 4 8 61 20 1983257 1983275 CCTGGACGGATATGGACAC 60 1982465 1982485 GGTCAAATAAGACTTGGAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 3 2 2 80 7 143385720 143386378 ACCAGTGTAAGATCCAGGAG 59 143385659 143385677 CTGTGATCTCGGACTTGGT 59 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 3 2 2 81 13 75118022 75118727 TCACTGACCAGAAGACCCT 60 75118769 75118790 GTGCCATAAGATACTGGTAGGA 59 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254 3 1 2 81 1 48274077 48281580 CATCGTCACTGAGTTTAACCTG 59 48281621 48281640 GAAGAAGCCCAAGTTCACAC 60 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000041130 2 1 5 184 4 140396760 140401963 CATTACTTGGCAGCAGAGG 59 140402110 140409761 ACATAGGAGTTCCTTGGGAC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 1 2 3 84 1 88586427 88587090 CATCTCGGTGGGATTTCAC 58 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 2 2 2 123 19 52181092 52184939 TGAAGTTTGCTGAATCCGAC 59 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167 1 1 2 80 1 81339699 81339718 ATAGCAACCAGACCTTTCAC 58 81339759 81341974 ATTTGAAACTCAGGACCTCTG 58 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000074985 3 1 2 85 1 81343480 81343500 AGAGACGTCCTCATTGACTG 59 81344479 81344497 GTGTAACTCCGGTTTCCCA 60 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 3 3 3 109 13 48801361 48804630 AATACGCTCTTCCAGTTCCC 60 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000077730 2 1 2 80 7 73285459 73289135 GATACCACGACAATGAGCA 58 73289179 73289197 GGTTCCAGATGAAGCTGTG 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 1 3 3 81 11 70381895 70381916 CAGACTTCTAGGAGTGAATCAC 58 70359774 70381855 GAAAGAAATCTTCTCCGTTCG 57 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 3 2 2 204 2 84436729 84436747 GATTCCTTCTACCCTCCGG 59 84394084 84436562 CAATAATAAGGCCAGTCCGG 59 NA DesignRelaxed Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116 1 1 2 83 1 48318481 48327832 CGAGAATATGCAGAGGCCA 60 48318416 48318434 TTTAGCTTAGCGGACGGTC 60 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 1 2 3 80 2 195883205 195883225 TCCGGGAGGATATAAGTAGCA 60 195880867 195883167 TTTCTAGTACCACCTGTATCTCC 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000003689 3 2 5 80 13 78767143 78768852 ATTGACCCTAGTCCAGATGC 59 78768893 78768913 ATGGACTACTGTACGTACAGC 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899 1 1 2 80 1 99452257 99455724 AGTCCTGTTTCGAGGATGG 59 99455767 99455786 CCACCAACACCATATTCCTC 58 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000084066 1 1 2 80 10 13556562 13557314 CTGTCAAACAGAAGAGTGTCTC 59 13555996 13556014 TCTCTGAGCGGAAGTTCTC 59 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000085322 2 1 4 80 15 8915970 8915991 CATACAGACACCAGTTCTACCT 59 8914484 8915931 TCTAAAGAAACCCTCAGGGTC 59 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 3 1 1 60 2 156807073 156807091 AGTTCAGCAACCTCTACGT 59 156792534 156792553 TGGAGATGATCCCATTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438 3 1 2 80 20 27255390 27258158 AACGAGGATGGAACTCTTGG 60 27255329 27255349 CAGTTTATGTTTGGCTCTGGT 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260 2 1 4 143 1 189328417 189359838 ATTCTCTGCTCAACATTCCC 58 189359942 189364283 AGGTAGTCCACTGATACTGTG 59 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 3 2 3 142 15 11874676 11878822 ATACTGACTTCACTCCAGGG 59 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 3 2 2 80 1 265788443 265788590 CAAAGAGATATACCATTGGCCG 59 265788384 265788402 AATACAGCTCCGTAGCACC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000038132 2 1 2 81 9 65943463 65943481 GAAACAGCGGGAATTCTGG 59 65931118 65943422 GACAAATTCCTCTTTAGATCGGG 59 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 1 2 2 80 6 55482106 55484779 AGAATTGTGTTTGTGGACCC 59 55484822 55484840 TTCGTAAGCGTAGAGACGG 59 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000080517 3 1 2 106 X 122624670 122626317 CCGTTTGACTTCAGTAGATTCC 59 122626383 122626402 GAAGAGCAATGGACGTTTCC 60 NA Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 3 2 2 80 3 3820393 3820484 ATTCAGGACATCAACCAGC 58 3820331 3820351 ATTGGAAATCTTCTCCCAGTC 58 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205 3 1 2 170 5 173291665 173291754 GGAAGGATGTGAACATGGT 57 173291958 173292139 CCTTCCTGAACTCTTTATCCA 57 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492 2 1 2 81 1 193132486 193132504 ATGCACTACCTAACCAGGC 60 193132546 193132725 GGATTGCCATTCTGTCTAACAG 60 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 3 2 3 80 6 108840952 108840970 AGTGAAGTCAGGTGGACTG 59 108841013 108857248 GGACCATCAAATCTTGGACC 59 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 3 2 2 87 6 67083576 67083595 CAGACAATTGTTCAGTTGCA 57 66984470 67083526 CCCTCTCAGTAGTACCTGG 58 NA Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 1 2 2 80 3 93705601 93706202 ATGGATTTAGAGGAGGATATGATGG 60 93705545 93705566 TGAACTGAGACTGTGTATAGCC 60 NA Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 3 2 2 80 3 93705555 93705575 CCAAACAGTGGCTATACACAG 59 93705220 93705515 ATTCTGCTGATATCCATCCCG 60 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000017252 1 1 3 80 2 243739958 243739978 GAATTTGTGACTGGCAATCTG 58 243740020 243740645 AGTTCGAATGCTGTTTCCC 59 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 2 2 2 96 20 7880382 7880401 GCACATCTACAATGCCTACC 59 7880460 7880582 GATGAAGGGTGCGTTATGG 59 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 1 1 1 60 17 62299592 62299613 AACTGTAATGTGACCATCATGG 59 62298069 62298087 GCATTCTTAGCAAGACTGC 57 NA DesignNoJunction Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078 3 1 2 113 18 63366539 63366558 AATAATCTGTTGCCGTGGAG 58 63360455 63366464 TAAGAGGCACATTCACAAGC 59 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 2 3 3 80 15 12582389 12583429 AGACATTGGAGAATGACGAC 58 12583472 12583490 TCTATGGCTTAGGGTCTGC 59 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 3 2 2 83 8 71662947 71662966 GCAATAACTCGAGAAAGCCA 59 71663010 71677978 TGCTGTTAAAGATCTTGGCTG 59 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 1 2 2 80 15 58655664 58656848 ATAGAGCAAGCTATGGATCTGG 60 58656888 58656907 GATCTGCTCCTTCAGAACCT 59 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000074740 2 1 3 165 4 183306371 183308684 AAATTCAAGAGGGTGGAGC 58 183306224 183306242 AGGATAGACGTGTACTGGC 59 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000001093 1 1 2 80 20 27756736 27756755 TATCCTGAGAACATCGAAGC 57 27720968 27756693 TTTCACCAACCAACTAGGC 58 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 3 2 2 80 7 137988982 138002514 TCCTGTTTCTGATACTTCTGAC 58 137988923 137988941 TTTCCTTGGAGCAGATCAG 57 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467 3 1 2 82 9 82437536 82437557 CCGGATAATAAAGAGTTTGCTG 58 82437600 82439343 GAAGGACCACTTCTGTCAG 58 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000082058 3 1 2 80 7 116960403 116961969 AACTTGGATTTCTGGATCCAC 58 116960343 116960362 CACGTCAATCATCCTCTTGG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 2 2 6 80 4 154715187 154716003 GAAAGTTCACTCCCACCTG 58 154716044 154716065 ATTTCTTCCTTGCTCTATGGTC 58 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 3 2 2 68 15 19727789 19727807 TTGACAGAGACTGGTGTCG 59 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 1 3 3 80 X 70333308 70333990 CAAGCCAAAGTATTTGGAACTG 59 70334027 70334049 GTACTTCTGATGCTGTTCATACC 59 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000087067 2 1 2 103 1 154054143 154054162 CAATGCCTATGTGTTTCCCG 60 154054228 154056365 CATAGTCGAGGACCTCTGC 59 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 3 2 3 86 12 17753010 17753028 TGAGGTTAGAGGAGCACCT 60 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000013353 2 1 2 100 7 117136838 117140135 TAGCTCTCCAGGTCAATGG 59 117136756 117136775 TTTCCATTTGTCTCCTGCTG 59 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000065931 3 1 2 101 19 26194783 26195474 ATGCTTAAGGCTCTCAATCTC 58 26195537 26195555 CTGGGAACAAAGCTTCCTC 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000084075 3 1 3 83 7 141347002 141348665 TTCTCAGTGGTCTTCACTCG 60 141348711 141348729 TTTCATGGTCTTCAGCCGT 60 NA Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 2 2 2 80 1 31979804 31980075 TTGTTCTGATTGATGAGGTGG 58 31980117 31980135 GGATAGCATCTGATGGCTC 58 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 2 1 1 62 7 34121488 34121509 GGCTCTGAGATACTATTACGAC 58 34103037 34103055 TACACAAACTTCTGCCCGA 59 NA DesignNoJunction Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423 2 1 2 110 4 31534281 31537248 AGCAACATGCCAATCTTTCC 60 31539048 31539066 TCAACACCATCTCTGCCTC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 1 2 4 81 17 72247455 72356851 TCAAGAAGAGGAGGAAGAGGA 60 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000087506 3 1 4 80 13 78227503 78382241 TCCTTATCACAAAGGACTCTG 57 78227443 78227461 TGAAGTAATCGTGTGCAGG 58 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799 1 1 2 80 1 267092772 267122327 CCAAGAGGAAATCAGGTGC 59 267092710 267092732 GTTTCTTATAGTTGGACACCACC 60 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000078647 2 1 2 88 10 12989712 12989731 ACCACAGAAACATGTCACCT 60 12989556 12989575 TAAGCTCCCACTCAGTTGC 60 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000005772 2 1 2 87 2 235852162 235852182 AGACAAAGAAGCACCAGCA 60 235850392 235850410 TCCTCGATAAGGAAAGCCC 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000087632 3 1 2 105 7 142147371 142147389 TATGTCTGTCAGGAGTCGT 57 142146931 142147305 CATGGTACACAAAGAAAGTACC 57 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368 2 1 2 80 1 48558057 48560215 TTCATCTGCAGGTCATTCC 58 48557995 48558013 GATGGAGGAAGTCTTGCTG 58 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 1 1 1 111 X 106792010 106792028 ATCGACCAGATCCGTACCT 60 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000013366 3 1 2 80 15 103885127 103927530 CTTGTTCTTCTGGTACTGGG 58 103885066 103885084 ACGATTGCCTTCGTTAAGG 58 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971 1 1 2 107 19 37668252 37669154 GAGCGATCTAGTTTGACGC 59 37669225 37669243 CAGGGATCTGGTGTACCAC 60 NA InUTR Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 3 3 3 80 15 24161530 24164290 ACGCAAACAGTATCACTCTG 58 24164332 24164351 TGTTGTTCTCATTGAAGCGG 59 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 3 1 1 60 1 255801698 255801716 CCAAGATTAAGGCTTGGGA 57 255801846 255801865 AGTCGTTTCAATAGCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000091310 2 1 3 122 3 146396287 146407087 GAGGGCAGTTCCTTTAGTG 58 146396183 146396203 GAAACTCTGAGGATCTATGGG 57 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 1 2 2 80 3 3541057 3541076 TACGATACCATGGTGGAGGA 60 3517147 3541015 CTCTGGTTTCTCTTGCACTG 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000085031 2 1 4 81 6 109673389 109673411 TATCATGACTCTGAGTGCTATGG 60 109673449 109674064 CAAACCAGTGATGAATACTATCCAC 60 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000090273 1 1 2 80 20 20464415 20469653 GCGTGTGATTATAAAGGGAGAG 59 20469691 20469712 CCTTCTTCATCGGTAAATTGCT 59 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159 1 1 2 93 6 27410706 27411255 ACTGGAACACCACAGTCAG 60 27411312 27411330 ATGCTCACTACAACCTCCC 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033 1 1 2 80 7 143695559 143695577 AGGAAAGAGAACGGTCGAG 59 143695620 143696906 TCCTTCGTGTATTTCTGCCA 60 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000021306 3 1 2 80 4 179696350 179696371 TCTAAATCCAATGTCCCAAGCT 60 179695036 179696310 TTTCCGTTCTACTGCTTGGT 60 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000015828 2 1 2 87 4 81249118 81249136 AAAGTACTGGACCGTCGTG 60 81249182 81252254 GTTCCCAAGTATTATCAGCATCTG 60 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000083743 3 1 2 86 3 82614559 82637787 TTTGGTTATGAGGTCTGGC 57 82614491 82614509 CTTGTTCATCTCGTGGTCC 58 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 3 2 2 84 12 13430076 13438069 TATCAAAGGGCCCACTGTC 59 13438117 13438135 GTCCTCTCCTCAGAGTCCA 60 NA InUTR Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 3 2 2 83 10 67839685 67839703 TAACCTCTGCTCGAACCAC 59 67839746 67842222 GAATAATACCTGACTGCATGTCC 59 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000008503 3 1 2 83 X 135342940 135342958 TTCAAGCAGAAACTGGTGC 59 135333713 135342893 GAACAAGTTGCCTGGAAGC 60 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572 3 1 3 81 10 5240095 5260251 CCATGGAGGCCATACTCTG 60 5240032 5240051 AGCATCACTGTTAAGGAGCT 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726 1 1 2 80 3 173798631 173798649 CGCAGGATCATTCAAACCC 59 173799632 173799908 CTTCTTCTCCAGTGTTGACTC 58 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006 2 1 2 81 7 10992823 10992841 CTCCTATGTCAGCCTCCAC 59 10992280 10992779 CGACTCAAATGCCATCAGAG 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000051067 1 2 4 80 17 70704243 70704262 CCAGTGTAGTCAGACCTTCC 60 70704305 70705176 GTCCCTTCTTTGCATCCTG 59 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 3 2 2 80 1 100892441 100892651 AACTTCCATGACAGCATCAC 59 100892694 100892712 GTGGAGCATTCTTTCCAGC 59 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 1 3 3 80 15 23853161 23859330 GTTCACGAGGCATTTACAGAG 59 23859370 23859390 GAAAGACCGAAAGAGCTTCTG 59 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 3 3 3 95 20 3296511 3296529 ATTTCCACCAGCACTACCC 60 3296140 3296453 TCTTCAAGACACTACCAGGC 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 1 3 3 68 4 82176911 82176930 GTACACAAGCCCTGTTTACC 59 82175284 82175302 TGACTCCCATACACAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 2 1 1 94 16 21087812 21087830 AATGAGTTGGAGGATGACG 57 21085633 21085651 AAAGTCATCTTGTAGCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671 3 1 4 95 15 819766 819785 ATGTCTACAGTGGGTTACGG 59 819843 837333 ACTACAATGTGCCAGTCCC 60 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940 3 1 6 90 17 77195516 77195538 TTCCCGAGCTGAGATTTCAG 60 77195588 77195609 TCTCCATACAGATGAAGCAGAG 60 NA Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622 1 1 2 98 5 139385747 139386308 ATACCAAGAGCCTGTGGAC 59 139395801 139395819 TTGAAGCAATGGACAGGTG 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 2 2 2 80 3 114052817 114053059 AAGTTGATAGGTCCTGGAGAG 59 114052757 114052775 GATAGCAGGAAAGCTCTGG 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 3 2 2 80 3 114052822 114053064 CTTCCAAGTTGATAGGTCCTG 58 114052762 114052780 CAGGAAAGCTCTGGTTCTG 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000050733 1 1 4 80 12 783319 786740 CTGACCCTTGTAAGGTCTG 57 786782 786802 ACCTAATTTCTCTTCTGGGTC 57 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239 1 1 2 83 18 54108793 54118140 CCTTGTCTACTCACAGGGAG 59 54118186 54118204 CTTTCAGGAAGGACTGGGT 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000061455 3 1 2 80 X 123487408 123487428 GTCGGAGAACAACATAATGGT 59 123487851 123493322 TCCACATGTGTACCATCCT 58 NA Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 2 2 2 80 20 29055376 29055394 GGTGTTTCTCCGACAACTG 59 29054297 29055332 GCAACTCGAACACCATCTG 59 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 2 3 5 80 20 3408364 3408645 AACTGGCTCTATCAGTCCC 59 3408302 3408323 CTTCTCTTGTTCAGGATCAGTC 59 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000075512 2 1 2 80 11 82696369 82696387 ACAGATTAGATCCCAGCGA 58 82698796 82698893 GATGACACTTACTGTAGCCC 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 2 6 7 84 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920368 102920386 CATGCAGAAGATCCAGTGC 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000079440 2 1 7 148 1 102924361 102929682 TGATTGTCACAAACCCAGTG 59 102929793 102930389 GACCTCATAGCCACCATCC 60 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 2 2 3 82 X 120959342 120959366 CTATCACTGTCCATGAAGTATAAGG 59 120959404 120960426 AGGTAAGTAAAGTCATGGCTG 58 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 3 2 2 80 1 73262718 73263405 CCTATGTCTTGTGATCTGCCT 60 73252060 73252081 TTTGTTGCAGTGGATATGATGG 59 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 2 2 2 80 1 73262719 73264246 TCCTATGTCTTGTGATCTGCC 60 73252061 73252081 TTGTTGCAGTGGATATGATGG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229 3 1 2 82 4 7707625 7707645 CGTCCTCCAGAATATCAAGGA 59 7707688 7769923 GCTCTTGTTTCCTCCATGTC 59 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000068594 1 1 2 118 19 42785530 42800102 AAAGACCAGGAAGTCGGTG 60 42781458 42781476 CTCTTCGATGAGAGCGGAG 60 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 3 2 2 80 7 142112274 142112292 GACATCCTGGCTCTCAGAG 59 142112334 142112443 CAAGGCTCTCATTTGAGAAGC 60 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905 2 1 2 109 2 251024317 251024335 AAAGTTGGAAGAAGCAGCC 59 251024406 251027841 TTCCATCAACCTTCTCTAGCT 59 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 1 1 1 112 15 27968305 27968323 GCAAGAGTCTGGTGAAGAG 58 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873 2 1 2 86 1 143661624 143679881 GAACCGATCAAATTCCTGGAC 59 143679929 143679947 CTTCTGACAAGGACCCGAG 60 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 2 2 3 80 18 63016855 63029868 CGGGACAAATCATCAGAAAGG 59 63029908 63029928 TTTCTGTCACAAGATCTGCAG 59 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840 3 1 2 83 3 3776257 3776670 TGAGTTCTATGAGAGGAACCTG 59 3776714 3776732 TTACCCAGGTTGCCATAGG 59 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423 2 1 2 84 5 171458087 171458105 CAAACATGCCCTATGCCAC 60 171457331 171458040 AAGCTTTCCAAATGGCACAG 60 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000081770 1 1 3 84 9 10462252 10462270 ATTGATAATGGCAGCGTGG 59 10462181 10462204 TTCTACCAGTGTGCTGTCC 59 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 2 2 2 81 9 74047918 74047937 CTTTCCGAATCCTTATGCCG 59 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 2 2 2 80 4 72016402 72016700 AAATAAGCACAGGCAACGA 58 72016340 72016359 GAAGTGTTACTTGTGCAACC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210 2 1 3 82 14 114540420 114540439 AGTTCTAGATGGAGCCTCTG 58 114540354 114540376 TCCTTCTTCCCTTCCATCTG 59 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 2 2 2 80 4 163393744 163395472 TCACCCAACGAGTTAACAC 58 163393682 163393701 TTCTGTGTAGGCCTTAAAGC 58 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000078050 3 1 3 81 6 122751482 122754135 ACCAATGTTGAGAAAGGAACTC 59 122754177 122754195 GCTCCATTGTGTCTACCGT 60 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000008256 2 1 2 82 10 86204827 86204846 AGTGACAAGAATAGTGGGCC 60 86204891 86208986 ATGTGAGGAGGACATGCTG 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566 1 1 5 88 19 43217285 43217303 GAATTCACTTTCCCTGCCC 59 43224101 43225359 TAACAACAGCACCATTGGC 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069 1 1 3 133 13 79886886 79886904 CTCTTCTCGGTCGTACACC 60 79887001 79887934 AACTAAATTCCAAGCCGGC 59 NA InUTR Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 1 2 2 80 1 214247653 214247674 CCAACAACTCAGAAGAAAGGAC 60 214247714 214247963 GCAGCTTCTTCATGTACTCC 59 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755 2 1 2 87 1 214233967 214234256 GTTGATCCCACTCATGATGC 59 214234306 214234324 GAAGTCTGCTGGTGGTAGG 60 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 1 2 2 81 14 21490739 21552670 ATAGCATGCTTCCAGTCAG 57 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054 3 2 7 83 9 43740208 43743119 ACTAAACAGATGTTCCCTGTG 58 43743164 43743182 ATTGAGGTTGACTCCACGA 59 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000012340 3 1 2 123 10 86680365 86684099 AGCTGCTGATGAAGGAGAG 59 86684186 86684204 ACATGCATTCCGAGAAGCT 60 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000066268 3 1 2 82 5 147268785 147270598 CTATCAGTTGGTTTACCTGCT 58 147270642 147270660 AGCCTGAGATCATCTTCCC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090 1 1 2 96 4 152960564 152960582 AAAGTATGACTGGTCGGGC 60 152960639 152965998 TACAACTCCCTTGTCCTTACAC 60 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312 3 1 2 82 1 56973187 56975912 CCAGCAGATATTAAAGGCCA 58 56973124 56973143 GATCTGCCAATTCAAGTGAC 57 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 3 2 3 93 13 83085513 83085532 GTTACTTCGAGTCAGTGCTG 59 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 1 2 2 80 13 48828477 48833438 GTTCATCAATGTGGTGGGAG 59 48828416 48828435 CCCACAAACAGGAAGTTGAC 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 2 4 4 80 4 85682355 85682374 GCTCAAGTAGGTGAGATGGT 59 85682416 85684389 TTCTGTCATCCAGACTTGGT 59 NA Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 2 2 2 80 1 257929210 257929228 TTGTTTGTGGCCCTTTGTC 59 257929269 257930439 ACAGCAAAGTAGGAATTTCTGG 59 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 2 2 2 84 12 8116097 8116115 GATCCAGGTACTCCAGCAG 59 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 3 2 3 109 19 53496515 53504638 CTATGCCAAGCTGCTTCAC 59 53496024 53496044 CGATGATGAAGAGTCCATCCA 60 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000078830 2 1 7 80 5 166015899 166015919 GCAGTTGATGCTATCCTTTCC 60 166012359 166015857 AAGAAAGAGCCTGCTGGAG 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000088123 3 1 2 115 1 69789168 69801088 CCAGGCCTCAAGGAATAGG 60 69801166 69804156 GGTTTCATGCAATACCACCA 59 NA Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 3 1 1 60 15 30750107 30750125 CTGCTCTGTTCTTGTGCTC 59 30751592 30751610 CACTGAGTCTCCATTGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593 2 1 2 80 6 44240074 44240745 GTGTCACTGGTTTGTATAGTGTC 60 44240782 44240803 GCAGTAGAAGATGCACTATGTC 59 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 2 2 3 88 15 28311303 28311632 AGGGACAGACTCATTCTGTG 59 28311234 28311253 GAATATCGCTGGACGTTTGG 60 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549 1 1 2 80 4 147824601 147824620 CTGTTGCCCTCATTGATCTG 59 147824662 147825650 TCTGGGAATTGTTGCTTGAG 59 NA Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 3 2 2 80 8 13865013 13865031 GACTTTGACAGCCGTAGAC 58 13865075 13865404 TTCATCTTCAGTTGACGGC 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95162003 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 3 4 10 83 9 95162003 95298733 CTTTCCAAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487 1 1 2 80 15 48171483 48171503 TTCCAGAGGAATAGCTTCAGG 59 48171545 48172587 GGGTTCAGTCCAGGATCAG 60 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 1 2 2 80 4 99410038 99413192 CAGTGATCCCAGGTACTGC 60 99413234 99413254 TTAGATGTGCTTGTTTGTGGG 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 1 1 2 108 2 166669302 166669321 ACATCAGATCATTCCGAGGA 58 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535 2 1 2 80 2 127708801 127708821 ACCATCTTGCTAATAGGAGCT 59 127707898 127708761 TCTGTCATTATCCTGGATCCT 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428 2 1 4 80 7 124223893 124225791 TGAAGATGAACAGGGTCCC 59 124223831 124223849 TAGCTGATCCCAATGGGAG 59 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983 2 1 2 89 1 220088592 220089500 CCAACTAAAGAATCTGGGAGC 59 220088523 220088541 TCAGAGGACAGCTGTAGGA 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000041514 3 1 5 80 14 22215242 22215262 GAACATGAACACGATGACGAG 60 22215303 22215915 GCATGAGTGGAGCTTAATGG 59 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331 1 1 2 89 11 83986364 83986382 TCGCTACACCTTGATGGTG 60 83986435 83987944 ATCTCTGTGTATGCCACCC 59 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000055103 2 1 2 80 1 188316054 188316072 ATGGACTTCGTGTTCTCCT 58 188319078 188319099 ACTGCTGATGACTTTCATCC 58 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 3 2 2 101 5 58394293 58396482 AAGTTTCGAAACAAGGAGCC 59 58396546 58396564 GATCTCATCTTCGTTGGCC 58 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578 1 1 2 80 7 2980224 2980243 TAACCAGTGGTCCCTTTGAG 59 2980046 2980181 TCTGGAGAAGAGCCTTCAG 58 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 2 2 2 107 2 54819098 54823567 TTAAAGCAGGAAGTTCCACG 59 54819010 54819028 GAGCTCTGCTATTTCTGGG 58 NA Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 3 2 2 88 1 36304885 36308226 TGGAGAAGAGTGAAGGTGC 59 36304815 36304834 CTTCCACTGTGAGACTCCAG 60 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 3 2 4 110 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779537 226779555 TGGAGCCACTTAGCATCAC 60 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692 2 1 2 166 X 71541178 71543908 ACAGGGTTAGCTGAGTTGG 59 71544037 71544835 AAGTGAGCAGATCTGTCCAG 60 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236 2 1 2 80 7 115038476 115038494 GGTCCAAGGAATTGCTGTG 59 115038117 115038432 CAAACAGGAAGGCCTTCTC 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 3 2 7 80 2 186117957 186122502 CTCCGTTATCATGAACACGG 59 186117896 186117914 GATGATTTGCTGCTGTCCC 59 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000077701 2 1 2 80 19 55936769 55936788 TAGCAGAGGACATCTCTGGT 60 55936830 55937689 TGAAGAGGTCCTTGTCATCC 59 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291 1 1 2 80 4 99769249 99769268 TGAGGACACTATAAACACCG 57 99769311 99769631 GATGAGGATGCTTCCTCTG 57 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 2 2 2 81 7 11280563 11280582 TTTCAAGACCTATGCACCTG 58 11279519 11280522 GAGTGAGTACAAGTAATCGTCC 58 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000046391 1 1 2 80 3 113126803 113126826 TGGTTTCCTCCATTCCCTG 59 113126741 113126759 TGACCACTCTTGACCTTCC 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889 1 1 2 80 3 113126804 113126828 TATGGTTTCCTCGTTTCCCT 59 113126743 113126761 ACCACTCTTGACCTTCCTG 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000056483 2 1 3 91 8 111749370 111752916 GCAAATTTGGAAGAACTGACTC 59 111749300 111749318 ACGAGAGTCAGGATTAGCC 59 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682 2 1 2 80 10 48452080 48452098 CCAGCTCCTTCAGACTCTG 60 48452142 48453515 CTGTCCAGTTCCACCTGAG 60 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000037168 3 1 2 80 3 113929638 113929659 CAGTACTACGTCAGCTAATGGA 60 113929699 113930558 TCCTCAGTCCCATCATTCAG 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000090572 3 1 2 80 15 107972668 107972686 AGTGACAGAGGTCATGCAC 60 107971981 107972624 AACTGGTATTGCTGTCCGA 59 NA Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 1 1 1 60 1 7801399 7801417 TCTGATGGTGTCACCAAGG 59 7801336 7801355 CCTTCCTGTGTTTCTTCACG 59 NA DesignNoJunction Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612 1 1 2 80 1 248344612 248349952 CAACTGTGTCACAGATATAGGG 58 248344553 248344571 ACTGACATCTTTGCCACTG 58 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000089073 1 1 2 80 1 248312359 248312379 AATCTTCACAAGACCTTCTGC 59 248311054 248312319 CACAAGATGCTTCTTCACTCC 59 NA Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000087404 2 1 2 114 10 107470417 107471084 ATAGACTGAGGAAGATGGGC 59 107471161 107471179 TGTTCCTCCTGAACTCGTG 59 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000043799 1 1 2 104 5 140825816 140825834 ACTTCACAAACCACAACGG 59 140825412 140825748 AGTCAGAGCATGCATCTGG 60 NA Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 3 1 1 60 1 98488073 98488093 TTACCCTTCTCGTTTATTGCG 59 98487789 98487807 TGCTCTGCATGATCATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000084985 2 1 2 141 1 79954826 79957196 TCATCAAAGCCACCAACCT 60 79957301 79957319 TACATGGTCAGGGACTGGA 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 1 3 3 80 18 65388811 65388832 CTCCCAGTACTACCCATATTCC 59 65388873 65389350 TTCTTTGTCTGCACCTCCA 59 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 3 2 2 81 12 22157213 22157864 CTCAAACCAGGTGATCATGC 59 22157906 22157926 CACACTGACAGAGTCATATCG 58 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 2 2 4 80 1 102824431 102824452 AGAAAGAAATCCATCAACCTCC 59 102824085 102824392 GTAACTTGGTCACTGCTTCTG 59 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000018170 2 1 2 89 4 100298283 100298305 GGTACTTCTCAGAAGAGTGAGAG 60 100297643 100298236 ATCCAGATCCCTGACAATGAC 60 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 1 2 2 80 19 38227821 38227839 GGTAGCATCTGCCTTTGTG 59 38227883 38228315 TGTAAACACCTGCTCTGCT 59 NA Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 2 2 2 80 1 197883674 197883694 CTACTATTACTGATGTCCGCA 57 197883412 197883632 GGCCTTCTACCTTAACCAC 58 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 2 2 2 80 5 21344899 21345641 TACGAGGAAGGTGTTGAGTG 60 21344838 21344858 TCTGGAGTTCAGGTTGATAGG 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 2 2 3 80 7 28741998 28742017 TTTGCAACCACTGGATATCC 58 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 1 1 1 156 6 26602158 26602178 GGATAGACACTCCGATAACCT 59 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000084613 1 1 2 174 18 1203162 1208834 AATATGGAGTTGCCGTGTG 58 1195749 1196547 CTCTAAGAGCTGCAGTAATATACTG 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000079836 3 1 2 82 12 12761978 12761997 TTCAAGAACTGGTGGAAGGT 59 12756944 12761938 CTTACTCTCAGAATACACCTTCAG 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 2 2 2 99 2 189893199 189896030 ACTTAAGCAGAGCTTAAAGCAG 59 189893121 189893139 TCTTCCTCCAATTGCTCCC 59 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988 3 1 2 80 11 81331675 81331693 CCTACGACCAGTATCAGGA 58 81331525 81331631 TGGTAGAGAAGGAAGCCTC 58 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 2 2 2 85 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958575 94958595 TCACAAGTCCCAGATATTGGT 59 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947 3 1 2 121 5 118491161 118491179 TTCCCTAGTACCATGCTCC 58 118478644 118489836 GATGATGTTCTTTGGGAGGA 57 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000078532 3 1 2 81 17 67899598 67899618 GAAGTGATGAGTTGACCAGAC 59 67899076 67899556 GAGAAACACCTGTCACAGTG 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 1 3 3 85 X 77120037 77135885 GTCCATCACATTAAAGTTTCCC 58 77135931 77135949 TCTTGGAGGGTCTTTGGAG 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694 3 1 2 81 3 11797854 11798609 TTTATCAGCAATACTGGAGGTG 58 11798651 11798669 TGATTTCTTCCCTGTCCCT 58 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657 2 1 2 86 4 22561734 22561752 TCGAAGATTCTGACCTGGC 60 22561801 22569784 TTAGTACAGTCAGCTGGTCC 59 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657 3 1 2 87 4 22561734 22561752 TCGAAGATTCTGACCTGGC 60 22561801 22569785 TTTAGTACAGTCAGCTGGTCC 60 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000084281 2 1 3 80 4 100281084 100281104 TGGAACAATCACTCCTATCTG 57 100281146 100281683 ATCAGGGTACCAGTAGTGG 58 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418 1 1 2 103 12 17506437 17506455 AAGAAGCACCTTGAGACAC 58 17503986 17506370 AAGAGGTCACCTGTGTAGG 58 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 2 7 12 93 20 3352064 3352082 ACTAAAGGACACCTCAGCC 59 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080419 2 1 12 81 20 3363583 3364249 GAAGCAGAGGATAGGTCGG 59 3364294 3364312 GAGCAACTGTATGCGTAGG 58 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000048306 3 1 3 86 11 84399463 84399481 GATACAGAAGCGTCAGGGA 59 84399532 84425170 ATTCCAACTGTGCTGTTCTC 59 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075982 3 1 4 98 2 208573814 208576689 GGGTCCAGGTTTGTATAATGG 59 208573736 208573754 CAGGAAGAGGTGGTAGAGG 59 NA InUTR Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 3 2 2 80 15 4005268 4005287 GCCTCAATGGAGATCATCCA 60 4005330 4005513 ATCTGCATCGAACCTGAGG 60 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 1 2 2 80 10 47721206 47721224 CTGTTACCTCCTTCCTGCT 59 47721044 47721163 AAGTCATCTTCTGTGTTGCC 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 3 2 3 80 11 80933949 80967267 ACTCTCAGTTAGTCACCACAG 59 80933889 80933909 ATGGGTCCCATACAATTAGGA 58 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950 2 1 2 84 18 71221185 71251381 CAGATTATGCCCAGGACCT 59 71251427 71251447 AGAGAATTAGTCAGGCAGGAG 59 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000014060 1 1 2 90 3 2452763 2453038 AGAAATGCAGGGACCTCTG 59 2452691 2452712 GTTGGTCAGTATTCTTCAGCTG 59 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604 2 1 2 97 6 123211230 123290820 TCTGCAAGTTTCTCCAGGAG 60 123211152 123211170 TCCCAATGGGAGTGATTGG 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537 2 1 2 81 10 86687976 86690582 CAACACAGGTGGTGTTATCAC 60 86687915 86687935 GTCACTATAGAGGGACTCTGG 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 1 2 2 80 3 114370882 114370903 TCTCAGTACAAGAACAAACGTC 59 114370943 114371520 TTCAGCCTTCACAGAAATCC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000091506 2 1 2 80 1 227496069 227497251 CCAAAGCCTTTGCACTGAG 60 227496007 227496025 AGGTGACGAAGAAGAGACC 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000084918 1 1 3 133 20 3731524 3731694 CAAGAACCTCATGCTGCAG 59 3731248 3731428 TCAGGGAGCCTTTCATAGAC 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179 2 2 3 80 7 120857298 120859601 TCATTTATGAAAGAGTCCCACC 58 120857239 120857257 CGGGCTCTTTCCATAAAGG 58 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537 3 1 2 113 20 31502140 31502158 GGATCCAGGGCTATCATGG 59 31488662 31492081 CCTTCTCACCCTTCATCCC 60 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023 1 1 2 80 9 74155060 74158496 CTGCTAGTTAAGCGAGGAG 58 74158540 74158558 CAGAAGTCCGTCATAGTCC 57 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828,ENSRNOT00000087156 1 2 3 80 10 56011 56032 TTACTGAAACTTCTCAAGTCCC 58 56070 56218 TGAGAAACACCAATGATAAGCC 59 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 2 1 1 61 3 11587988 11588011 CTTGATCATCTTCACCTACTACAC 59 11589153 11589171 GCTGGCTGTCAATGAATGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 2 2 2 104 15 29208650 29208775 TCTACTCGGAAGGACTCGT 59 29208842 29208861 CTTGTGGCTGAATAAGTGCA 59 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 2 2 2 80 1 273727102 273728657 GATTATACAGGCATCTCGTGGA 60 273727043 273727061 CACAAACCACACGATGCTC 60 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000085089 1 2 3 80 14 34783085 34783554 TGATTCCAGATGACAGCCA 59 34783596 34783616 ATTTGTTCCTGTCTTCCAGAG 58 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192 3 1 2 81 9 96960209 96960229 CAAAGCATGGAAACTAAACCG 59 96960272 96970467 TTCTTCTTGCTCTTCGGTG 58 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 2 2 2 80 1 197211341 197211359 CTCATGATGTGGACATCCG 58 197211401 197220544 CCTTCTTGCTCACTAAATCCC 59 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365 3 1 2 80 1 197155911 197165122 ATGGCACCAGAAATCTGTG 58 197165165 197165184 TCTTCTGAACAGTCCAGAGG 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000055983 1 1 2 86 2 208399394 208400116 CACCATCAGAACAATCTCCA 58 208398767 208398785 GCCAGGATTAAGTGTTCCT 57 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 3 2 2 80 2 197989958 197989978 AGAACTCCAAGGGTTCATACG 60 197989634 197989920 CTACTTAATCCTCTGTCAAAGCG 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000083830 3 1 2 95 7 125940510 125947136 CTAGACAGGATTCACAGATGGA 59 125947795 125947814 GTTGCTTCCTAATGAGGCTC 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000022731 3 1 2 108 2 208623055 208623158 CTGCTTTACAGTGGAAGGTG 59 208622966 208622985 AGAGGGAGATAAGTGTTCCC 58 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000077754 2 1 2 81 5 124476197 124476218 AATTTCCAGAAAGGCCATGC 60 124476262 124476280 GCTGAGGGTCATTCCTCTC 60 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 1 2 2 80 8 55045945 55045966 AGAACTAGAGAAGCAAATGGAG 58 55044508 55045904 CTTCTCATCCGACTTGAGC 58 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000042506 3 1 2 128 10 72171217 72175227 ACCTAAACCTTTGGGAGGA 58 72171107 72171126 CTGTGCTTTCGAAGATACGT 58 NA Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000079633 1 1 2 80 1 101512943 101512963 CAGCATTGTCTACCAGTAGAG 58 101512882 101512903 CAGGTAAATAGAAGGCCACTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 1 5 9 91 9 81537273 81537291 TGGAAAGGTGTTCATGCAG 58 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 1 4 9 80 9 81537220 81537240 AGAGTCACAGTAGTCTTCAGC 59 81537280 81543836 TTTGAACTCCTGCATGAACAC 60 NA Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 1 2 2 80 8 59605065 59605083 GGCTAATGTGTCCCATCCA 60 59604898 59605024 ATCTGGTTTACTTCATCCACCT 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 2 2 2 84 4 162185000 162228923 ATTCCTCACAGTAAAGTGCG 58 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600 1 1 2 80 14 77329725 77332454 GTCTCATACAGGTGAGAAACC 58 77338365 77338383 AAGTGAGTCTGAAGGTTGC 58 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000065743 3 1 2 89 9 94316803 94323053 ATAAGAGCCAGAGTGGTGG 59 94323105 94323124 GAGATGAAAGTCACTGTGGC 59 NA Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 2 2 2 81 X 14506269 14530136 CATTACTACTGGAAGATGCGTC 59 14530178 14530196 GGCTAAGATGTTGCAACGT 59 NA Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 3 2 2 82 X 14506269 14530135 CATTACTACTGGAAGATGCGT 58 14530179 14530197 TGGCTAAGATGTTGCAACG 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 2 3 3 80 11 73702774 73702794 GGAGAGCCAGAGAATTAAGAG 58 73702834 73703244 TTTCTGTCCCAATTTGGTCTC 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000085788 3 1 2 80 14 83208896 83208916 GACTGTGACACAAGTATTCCG 59 83207389 83208855 TCAAGAGTCACATCCTTGGG 60 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301 3 1 2 97 5 169301415 169303651 ATCTTCTACTGGCAGCACC 60 169301336 169301354 GTTTCAGACTCTTGCCTGC 59 NA Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 3 2 2 83 12 24149027 24149045 ATTAGCTACCAGTTGGCCA 59 24151421 24151440 CGTACAGATCTTATGGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080820 2 1 4 80 1 63842419 63842600 CTGATCTGTCTTGGACTGAC 58 63842821 63842839 CTGTGCTCTGAGGATAGGT 58 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 3 2 2 102 4 162393020 162397227 GAATTCCTCACAGTGAAATGCT 59 162397290 162397308 CTGAGGACCACGATCACTG 60 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000009977 3 1 2 82 5 124212393 124212411 TAAGCAGTGTGAACAAGCC 58 124212943 124214422 CCTCAAACACAATGTACTGGT 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 3 3 3 82 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857 1 1 2 95 1 141666726 141666744 CAGACAATATCATGGCCCA 57 141665887 141666667 CTCAATCGTCCCATTCCTC 58 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000007602 1 1 3 80 6 131913100 131913666 GACTCAGGTAGAAGAATCAGAGG 60 131913042 131913061 GGCTCTTCTATCTCCAGACC 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777 2 1 2 80 3 45088987 45110852 AGACATACGCAGTAACTTCCA 59 45088927 45088946 AGATTTCCGGGATACTGGTC 59 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000078982 3 1 2 82 1 142145931 142148388 AATCAGGAACTCAAAGGTCC 58 142145868 142145887 TGTTGAGGTACATGGAAGTC 57 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 1 2 2 80 6 132943696 132943714 TCTGGAGATTGAGCTGAGG 59 132942508 132943654 ATGTAGTTGCTCTGAATCCTG 58 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 2 2 2 182 3 120076233 120086989 GGAAGCAATGAAGGCATCG 60 120032292 120076087 TCACTGTCACTGCTGTCTG 60 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000067060 3 1 2 131 11 69193380 69223106 TTACCTGGGAAGACCATGG 59 69193267 69193285 AGGAGGCAGAATGAAAGCA 59 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 3 2 2 80 12 23607117 23607373 AATCCTTTCTGAAGGTGGCA 60 23607056 23607075 TCTTCTCCTCGAACACTCTG 59 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 1 2 4 80 9 111205732 111205750 GAACCAGACTCAAACGACC 59 111200742 111205690 GATAAAGACTGTCCTGCTCAC 59 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 1 2 2 80 13 51194018 51199865 CAAGAGACACAAAGAAGACCT 58 51193958 51193977 ATATAGGAAGCCAGCAACAG 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 3 2 3 80 6 28518458 28521604 ACTATGGAGTCACAAAGGTCC 60 28521646 28521664 AGAAGAAGGGATGTCCAGC 59 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 1 2 2 80 1 80102730 80102749 ACGAATCCAACGATCATGTG 59 80102788 80103574 CCTCATTAGAACACTTGCTATCC 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796 2 1 2 80 1 114453770 114453790 CTGAGTCTTTCTGTTTGGCTG 60 114453831 114469934 CTCTTGTGAATGCAAGCTGG 60 NA Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504,ENSRNOT00000090695 1 2 2 63 7 144065652 144066010 GTGGAATCCTAGTGCTGGG 60 144066037 144066055 ATTGGAACCTCCTGGACAC 59 NA DesignNoJunction Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 1 2 3 101 10 88413603 88418144 TCCCTGCAAGGAAAGAGTG 60 88413520 88413539 GTAGTCAAAGTCCAGCATGC 59 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 3 2 2 145 1 222170574 222170592 GAACCTGAGAAGCTGTACG 58 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000022596 3 1 2 90 3 120729678 120729864 CAGAATCGCAAGACAGGAG 58 120729917 120729936 AGATAATGGTTGAAGGCCTG 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000079694 1 1 3 80 2 240652233 240652252 TGATCCAAACCCAGATGACC 60 240652290 240652778 GCTAACCTATTGTACTTGTCTCTG 59 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867 1 1 2 80 10 94475477 94476018 GCATGTCTACAGTTTCCCTC 58 94476059 94476079 CAGGTCACATTAACGTCTGTC 59 NA Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 2 2 2 82 20 31102606 31142381 CTCAGATACCCTGGACCTG 59 31142427 31142445 GGTCAGAGACGTTCCTCAG 60 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 1 1 2 80 5 59064458 59066437 CTTCCTCTCACTAAGGTGGA 58 59066480 59066498 GCTTTCTTGAGCTGCTCTC 59 NA Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 1 2 2 80 9 85563580 85566359 CAGTAGTGACAACTGCAATCC 59 85563520 85563538 GGATGCAGAACAGGAAAGG 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189 3 1 3 92 12 25450328 25452061 TTTGCAAGGAAGCCATCAC 59 25453985 25454006 GTTTCTGAAGGGACATGTTGAG 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 1 5 7 80 15 34691949 34691969 GTCCAGAAACTACAACGACTC 59 34644700 34691907 CCTGAGTCTCCCTTACCAG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 3 3 7 98 15 34668455 34668474 AAACACCCAGGTCATCTCTG 60 34645366 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 1 1 1 90 20 3793017 3793035 CTCAGATACCTGGAGCTCG 59 3791978 3791996 CATCACCTTCAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 3 1 2 82 2 86470236 86470257 GGCGAGAAGCCTTATAAATGTG 60 86470171 86470196 TCTAGCATGAAGTAGTGTCGAG 60 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419 3 1 2 88 5 59084320 59084338 TAACATCCCGAGAACCAGG 59 59084389 59088505 CCAGTTTACCTGTTCAGGTC 58 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 1 2 2 85 20 32124114 32133340 CAGTTCAAGGTTATCCTGCTC 59 32124049 32124067 CTCCTCAATGCAGTTTGCA 59 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000077245 2 1 2 81 4 155534888 155534906 CAAGCTAAAGCTGTCTGGT 58 155534951 155534972 CATCTTCTGTCTTGGTGAGG 58 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 1 4 4 80 1 81793829 81794036 AGTTCAAGAACCTGGATATCAC 58 81794075 81794095 CAGCTTTGTCTTTGGTTAGTC 58 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799 3 1 3 91 13 113840134 113840152 AGAAGGCAGTTCTCAGAGC 59 113836271 113840084 GAGGGAGTTTACATATCACTTGAG 59 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 1 3 3 80 20 3991814 3991962 CAGGAAGTTACATTGCTACCA 58 3992004 3992022 CACAACCAGACATGGTTCC 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660 2 1 2 80 3 122006607 122006628 ACTACACTGTGGAAGATTCTGG 60 122001148 122006567 GATGAAAGGCTTCCCAACTG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000087673 3 1 3 80 18 62906661 62930772 CCAGACCTCTCGGTATACC 58 62930815 62930834 AAAGATCCCTGATGTCAGCA 59 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000015482 3 1 2 80 3 149160938 149160957 ATGTTCGAGAATGTTGTGGC 59 149160998 149161833 GATCATCACTGGGTTACATGC 59 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600 2 1 2 82 6 136418660 136418678 GAACTTCAAGACATGGCGG 59 136416116 136418614 TGTAAACGCTGTTCCTTGG 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000067118 3 1 2 135 6 136412015 136412033 AGAATTCCAAGCTCCAGCA 59 136409123 136411916 CATTCACACGGTTCAGGTG 59 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000017907 1 1 2 80 4 10688646 10688664 GAGAGTACTGCCCATGTCC 60 10688705 10692444 CTAACGTCAGCATCTTTCTCAG 59 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 1 3 3 171 20 34656731 34683162 GGCTCGGACTATTCATCAG 58 34647152 34656596 AAGTTGAGTGGTCTTCCAC 57 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000028814 3 1 2 96 2 198829584 198829603 CCACTACATGAGTACCCACC 60 198829823 198830316 GGCTGTAGTGCTGACTCTC 60 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 1 3 3 80 X 77284303 77290479 CTACTACTCCTACTGTAGCACC 59 77284244 77284262 TTTGGCTTGTCACTGACAC 59 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109 1 1 2 80 2 198936250 198939144 TGTTCTTGTCACAGAGAACCA 60 198936190 198936209 AGAGTGCCATTCATATGGCT 59 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000006393 3 1 4 82 7 78559013 78574177 GAAGATGAAGGAGAAGGAGGAG 60 78574220 78574238 CTCATCTCCACTGCTAGCC 60 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466 2 1 3 80 5 127625160 127625178 ATCCTGTCCAGCAACTTCC 60 127624823 127625119 CTTATTGTTCTTGAGGTGGAGC 59 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611 3 1 2 80 20 46744206 46744945 TCCCAGAGAAGGAGATGCT 60 46744989 46745007 CCAAAGCAGCGAAAGAGTC 60 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129 3 1 2 82 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102342692 102344233 GAGTACAAGGAGGTGAGCTC 60 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 3 2 3 81 2 123348670 123348689 CAAATGCAGGAGGAGAAGAC 59 123345081 123348629 CTGAGTGAAGAGGTTTAACCTG 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575 3 1 2 81 11 72805387 72806223 TAACTTCATTAGGCAGGAACAG 58 72805327 72805345 CCGGAATAGATCTGCAAGG 58 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 3 2 2 120 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044060 51044078 CCACACTCAGGTTGTTCCA 60 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709 2 1 2 80 6 135214179 135214201 TCTTGAAGACTGTCTAGTCACTG 60 135214240 135224103 GACAACAAGCCCACTTTACC 60 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000082595 3 1 2 145 6 135214112 135214131 ATGTTCCCTTGTTAGAGCCA 59 135214239 135216712 CTCTGCCGACACTTTACCA 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 2 2 2 80 4 57830771 57832753 CTAAGTAAAGCAAGCAAAGAGG 58 57832793 57832812 TTTCTTCAGCACTAGTGAGG 57 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 3 2 2 80 4 57830772 57832754 TAAGTAAAGCAAGCAAAGAGGC 60 57832793 57832813 GTTTCTTCAGCACTAGTGAGG 59 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 2 2 2 84 6 137210241 137212039 GAGGTCTTCGAAAGAACCA 57 137212087 137212105 TGATGGAACAACCTTCACC 58 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 1 1 1 60 4 98481788 98481806 ACTGTCAGCAGAGTAGGGA 60 98542664 98542682 TTGATCTCCAGCTTGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598 3 1 2 163 6 33841568 33856955 GATTTGGCTCATCAGGAGG 58 33857077 33857100 GATATCAGATCTGTTATAGCGGAG 58 NA Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000008359 2 1 2 81 6 33841511 33841529 CTCTTGGCTTTGGAAGTGG 59 33841574 33845673 GAACTGCCAACTGATGAGC 59 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000087656 1 1 3 80 12 25364080 25364101 GATGGTTATCATCAACCAGCTC 59 25364815 25365914 TTGTTAGAGTCGTCCTCATCTG 60 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054 3 1 2 80 6 101612852 101612870 ACAGTGGTGTAGCTTCGAC 60 101612912 101614697 AGAATGGATGGTTCTTTGCAG 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 3 2 2 81 19 10879166 10880944 GCTTAATCACGATCGCAGC 60 10879103 10879121 TTCTTATCCAGCTTCCGGC 60 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 2 1 1 71 1 81844063 81844081 TTTCCCTTTCTTCTGGCTG 58 81843926 81843944 ATAAGTACCAGGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 2 2 3 81 4 163419649 163419669 TGGATTCTTTCGAAAGAGCAG 59 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 1 2 2 80 16 37133286 37133307 CAAAGTTCTCACATAGGTTCTG 57 37132175 37133247 GTACATAGACAGCATCTGGAC 58 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291 2 1 2 83 8 49300852 49306237 TGCCAGGAAGAGTATGAAGTC 60 49300789 49300812 CCACTTTAAGTTGTCCTCATTCTC 60 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000091370 3 1 2 84 17 5613820 5613840 GTTAGAGGTTGAATTAGCGGA 58 5613885 5613990 TCATACTTCCTCAGAGTCGG 58 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000050676,ENSRNOT00000049917 3 2 3 115 14 760108 761781 ATTGGACATCCCAACAAGG 58 760011 760029 TTGAAAGCCATGACCACAG 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051 3 1 2 106 7 144266572 144266590 GCCAAGTTCATTGGAGCTG 60 144264478 144266503 AAGAGAAGACTGGCATAGCC 60 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000022665 2 1 3 80 18 12028709 12028730 AGAATGGACGCAAATTACAGAG 59 12028769 12029079 AGAATACAGATTGGTGGAGGT 59 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000091651 1 1 3 80 6 34030881 34053176 AATTCAACACAACCAAGGTGG 60 34053216 34053236 CTGGCATGGAATTTGGATGAG 60 NA Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 2 2 2 80 15 38217676 38219484 TACGATCCTCACAAAGCCTC 60 38217615 38217639 CTCTCAATCATCTCATTACCATCTG 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930 1 1 2 80 4 86127134 86127516 GGACTCTGAATTCTTTGTCTCTG 59 86139210 86139231 ATTCCTTGTTCATGCAAAGGAG 60 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 3 2 2 80 2 238126462 238126481 ATTGTGGATTTCTGCAGTGG 59 238124638 238126268 TATTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992 1 1 2 80 8 114531103 114531126 CTCATGGTGAATGATGAAGAAGAG 60 114529022 114531064 CGCATCTTCACCATCTTGC 60 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 2 3 3 80 1 275866081 275866099 TGCCACAACATCAAAGCTC 59 275862946 275866040 AAGCTTGTGAATCAAGGTACTG 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 1 3 3 80 5 173479469 173479487 CCAGAGCATTGAGGATGAC 58 173478492 173479425 TGGACATATCTCTGCACCA 58 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 1 2 2 80 11 70062386 70062404 GGAAACCTGACAACCAGAC 58 70060039 70062342 GGTCGTCTTTGACAATGCT 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 1 3 3 80 17 6189449 6203240 AGATTCCCAATTGTGGTCTG 58 6189388 6189406 AAATGGTCACAGACTTCCC 57 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696 3 1 2 80 12 29066652 29066670 CACTACAGGACACGAAGCT 60 29066714 29070406 GCATCATCCTCATCTGGCT 60 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907 3 1 2 81 14 44689029 44690079 CTCGAGTTGAACAGATTAAGAGTG 60 44690118 44690137 TCATTCATAGCTGGAGGTGG 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036179 1 1 5 81 11 78250500 78256044 TTCAGAAACATCTCCTTTCAGC 59 78250440 78250458 AAGACGTCAGACTGTGTCG 60 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 1 2 2 80 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741583 228745379 ACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781 1 1 2 90 19 983260 983550 GATGTGGGAACAGTGAGTG 58 983186 983204 AATCCTTGGAGCAGAACAG 57 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704 3 1 2 95 5 173337584 173337602 AGAGTCAAGATCCCTTGGG 58 173336876 173337525 TTTCCCAGCCAAAGTTGTC 59 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000082970 1 1 2 83 X 128613777 128613796 GTTACGGCCTGAAGATAGCT 60 128613842 128613950 ACCTGCGTGTTGTAATCCA 60 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 3 2 2 81 11 86839224 86839247 GAGTATATTCAGCCAATACTGAGC 59 86839287 86839839 TGATGGTGTTGGTTCTGGT 59 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000001215 2 1 2 80 12 30207486 30210421 CCGGATATTACTTCAAGACGC 59 30210462 30210481 TGGTATTGCTCACAAAGGTC 58 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000086399 3 1 2 81 2 114342004 114342023 GGTGAAACCAGAAGAATCCA 58 114343929 114349254 CGTCAGATCCTCATCTATAGC 57 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 2 3 3 80 5 122126897 122128458 TCATCTAGCCAAGGAGCTG 59 122128502 122128520 GGCCGATTATGGGAGTACC 60 NA Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000058803 2 1 2 80 14 71105117 71110766 CCACTCAGGATGTGATGGT 59 71110808 71110828 TAGTGATTAGCCTTTCGTCCT 59 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 2 3 3 87 2 200798231 200798249 CAATGAAGCACAACGTCCA 59 200798298 200806603 CTCAGAGCATCAATTGAAGCA 59 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000046611 2 1 2 86 1 87203129 87221448 TAGACGTCCACGAGAACAC 59 87202125 87202143 CAGAATCCTGCTTTCTGGG 58 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 3 3 3 87 4 162086884 162167863 TGCATATAACAACTTGGTTCCC 59 162167910 162167929 TATGTAGTCCTTGCCACTGC 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 2 3 3 101 6 136245337 136245357 GTTCTGTGGTCTGTGAATCAG 59 136247590 136247608 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 3 3 5 111 14 71542387 71542405 CATCTTCCTCAACGTGGTC 58 71572868 71579460 TTCATAGATGGCGACCTCC 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 1 2 2 80 17 9692833 9693020 CAAGCCTCCAGAAATCGAC 59 9693064 9693082 TAATCACCACCCTCGAAGC 60 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 2 2 2 80 7 126759572 126759593 GATCTTAGACATCCCTTTCCAC 58 126759632 126761573 TACTCGTTCAGAAAGTCACTG 58 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 3 3 3 80 13 56992924 56992943 GTATCGAATGGATGGCTCTG 58 56991237 56992884 CAGGAATTATCTTTGCATACCG 58 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 3 2 3 80 13 57008468 57008486 CCTTCACAATGATTGGGCA 58 57006167 57008426 GATCTGTTGCAACACATTGAG 58 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000028854 3 1 2 80 3 123597649 123597668 TCCCTGATACTCATCTGGAC 58 123597349 123597609 TATTGCAAACCATTCTAGGTCC 59 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000088795 3 2 3 83 6 103379893 103380869 ACTTTGACCGGGATCACTC 59 103379828 103379848 CGTTGCCAATATCATAACCCA 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724 1 1 2 82 8 53313935 53319657 TCAGTGCTGTTATTCAGTCTC 58 53319701 53319719 AAGAATGTTCTGTGGCAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027518 2 1 3 80 10 15454919 15457174 ACATCCTCATTAACTGTGCTG 58 15454859 15454877 CCACCACAGTCTTAAAGGC 59 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 3 1 2 74 2 95078030 95078048 AAAGACCAGACGTGGATGG 60 95173507 95173527 TCAGTTCAAGATCCAGGAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 1 2 2 80 2 203832410 203832429 ACAACAATACCTGGACGAGG 60 203832472 203844309 GAAGCTTTGTCACTGGCTG 60 NA Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 2 1 1 62 17 36915424 36915442 TAGAGGACAGACAGTGTGG 58 36906718 36906736 CTGCCCTTGATAGTCAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270 1 1 2 109 2 95036120 95037362 CCTGCTATGAGAAACTCTCCA 59 95038769 95038787 AGGACTTCTCCAAAGTCGC 60 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270 2 1 2 110 2 95036120 95037361 CCTGCTATGAGAAACTCTCC 58 95038770 95038788 CAGGACTTCTCCAAAGTCG 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584 1 3 5 80 10 56194528 56194546 CAAGGCAACTATGGCTTCC 59 56194589 56195294 GAGGGAAATTGAGTACGTGC 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 3 2 5 89 10 56195686 56195704 AGTACATGTGCAACAGCTC 58 56195757 56196086 GAAGATTCCCACTGGAGTC 57 NA Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 2 2 2 82 6 136393197 136394309 CTTGTAAGCGGAGCTACCT 59 136394355 136394373 TGGTTGTTGGAAAGACGAC 58 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 3 2 2 87 9 17123718 17123736 GTCAGGTGTACCAGGAACC 60 17123784 17123881 TGTGCCTGGTATAAACTTTGTG 59 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 3 2 2 97 10 70328334 70332640 TATTTCAAGTGTCAGCAGACTG 59 70328258 70328282 CTGGCTTATTAAGTTCTCTAGTCTC 59 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083 2 1 2 81 20 27039180 27039202 GAAGGAACCTTAATCGAAGACTC 59 27041785 27043788 AGATCTCCTCTGGTTCTGC 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 1 2 2 80 8 116443729 116443747 ATGTTAGAGGAGGTGGAGG 58 116442987 116443174 ATACAGTTGTTGCCTCTTGG 58 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 2 2 2 80 2 22073908 22073926 GTGGTGTTCAATGGTGCTC 60 22070369 22073867 TTGAACCATTAAGCCATCTTCG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 9 18 60 1 43508749 43508767 TGGATCGAACTAACCACCA 58 43527519 43527537 AGTTAGGGCAATGGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000075728 1 2 3 88 2 235708726 235709243 AAGGAGAACAGGGATTCCG 59 235709295 235709313 CAATTGGCAAGGAGCATCC 60 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463,ENSRNOT00000075728 2 2 3 85 2 235645098 235645116 CCTGGAGAATCTGGTCGTC 60 235650125 235660902 CCTGGTTCTCCCTTTATCCC 60 NA Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 1 2 2 80 18 38329672 38329690 TGTCTCAGTTCTTCGCCTG 60 38321401 38329629 TCATTTGGGTTGTCATCTGC 59 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000018763 1 2 3 80 1 233140418 233141942 CATCAGTGTGCTTGAAATGAG 58 233140358 233140379 AATTCCCTCACAAGATTCTCTG 58 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000018763 3 1 3 119 1 233125897 233125918 CGTAGAACTCAACATGATCTCC 59 233124158 233125052 AAAGACCTCAGGAAGGCAG 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 2 2 2 80 19 10341169 10341414 CACAGGAGATATCAAGACATCG 59 10341110 10341130 ACAATATTCAGAAGGTCCACG 58 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 2 2 2 80 11 86704183 86704204 GTACTTTAACATCAAAGCCAGC 58 86703056 86704142 GAAAGCTGAGTCACCTTCC 58 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 3 3 3 80 1 214154476 214154494 TTCCATGAGGCTGGTATCC 59 214154339 214154434 GTTCTCCAGTTTGAGTGACTC 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601 1 1 2 80 8 23349820 23349841 CGTTATCTTCTGTTGGAGACAC 59 23346204 23348417 ACACTCTATCTTGCAGCGG 60 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 1 2 3 80 6 136119892 136127001 CTAAACTCACCAGAAGACTTCC 59 136128837 136128856 GTTCCGAAGATACATTGCGA 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000078202 3 1 2 109 18 28426417 28427864 CAGCAACTCAGAATGAAAGAG 57 28425929 28425948 TGAGCTTTCATCTCTGAGAC 57 NA Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 1 2 2 80 6 133578595 133578615 TAATGGACTCTGTGAAGAACC 58 133578656 133581249 GCCCGAATATCTATTTCGCA 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000083594 3 1 2 80 11 33980226 33980245 AGAAATCCAGGGTAGTCGTG 59 33980289 33980897 AGAACAACAAACAAGGACAGG 59 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088724 3 1 4 80 13 70229187 70236254 TACAGCATGGAGAAATATGACC 58 70236294 70236313 GTCTATCAGCTGATTCCCTC 57 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000078274 3 1 4 128 5 58684306 58686358 TCTGGTGAAGTCACTGGTC 59 58686893 58686911 GGGTAGATTAAGGCCTGCA 59 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 1 2 2 80 3 123783602 123783622 GTGGCTTCCAAGATAAACCAG 59 123783663 123785604 CCTCCGAATTCTCTACTGGG 59 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000089140 3 1 2 80 17 16340530 16354215 GATCGGTCATTGGAGACGA 59 16354259 16354277 ACTGTCATTCACCAACGTG 58 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945 2 1 2 80 3 1801826 1801847 AACGTCTTTGACTTTGTCACTG 60 1790828 1801788 GATGAAGTTGTTCTTTACCGCA 60 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122 2 1 2 81 10 70719633 70719654 AAGGAATTCCTGTAATCAGTGC 59 70719690 70721587 GATCATTTCTGTAGTCATTTCTCCC 60 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000044885 3 1 2 80 3 15376507 15376527 CATCGGTTATGAAGAAGCAGG 59 15374115 15376466 GAGCTGACTTTCACCATCAC 59 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000005478 2 1 2 81 10 17276381 17276400 ATGAAATGAACCTGGAGCGA 60 17276444 17279378 CCCTGGAACCTGATCTTCC 60 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 3 2 2 80 8 4326271 4333302 GACGTATACAGATGCCAACC 59 4333344 4333363 CTGGCATTCCATTCTTCCAG 59 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 3 3 6 87 9 17351564 17351583 AGACGTGTAAATGTTCCTGC 59 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000056493 2 1 2 130 4 145453516 145453535 AAGCTGCAAATGGAACAGAG 59 145453403 145453427 GTGCTTTCTATTTAACCCTGGTC 60 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 3 2 2 81 6 24163119 24181540 TCCTATCAGATCTTTCCCGAC 59 24181583 24181601 GTTCCACCACTATGGAGGG 60 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995 3 1 2 83 13 69984266 69984290 GCATCTTCTTGTCAACATATAGAGG 60 69962599 69984228 CTGTCAAGTTTCCATACCTGTC 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271 3 1 2 82 6 86739088 86739109 GTTCAACAAGACTTTCTTCTGC 59 86739148 86743356 TACACTGGATGTAGTTATCCCTG 59 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 2 2 2 80 5 153261794 153262436 GCCTGAGTGAGAAAGATCG 58 153262478 153262498 CAAAGTTGGCTGTTCCTAGAG 59 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 3 2 2 80 5 153261797 153262442 TGAGTGAGAAAGATCGAATGGA 59 153262483 153262501 GGTCAAAGTTGGCTGTTCC 59 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289 3 1 2 84 5 153262558 153263950 CCAAAGACGGAGCATTCAG 59 153263997 153264016 CTATGTTTCTCTGTGCAGCA 58 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000083912 1 1 2 80 13 56941971 56941990 CTTCAGGGTCACATTCAGAC 58 56941504 56941928 AAACACATTCCTTGAGGCA 58 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000080382 3 1 3 87 3 29868408 29868429 GTATGCATGTGACTTATGTGAC 58 29866885 29868360 TGTGCCTATTGTAGCTGTG 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 1 3 3 80 6 76461468 76461489 TCTCACCAATATAGGAGGAAGC 59 76455476 76461432 CAGTGATTTGTAAGGTTTACCTCC 60 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326 1 1 2 82 14 71875783 71875803 AGAGCTTTGTCCTAATCTGGA 59 71875847 71876779 CAAGCCAAGACCAACTGTC 59 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388 1 1 2 81 1 25734957 25734980 GCAAAGCAGAGAAACCTGAG 60 25720427 25720445 GCTGCCATCTTTGTCTCTG 59 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 2 3 3 80 1 135354657 135354675 CATCCTGAAGCACCATGTC 59 135336648 135354613 GTCAGCCAATATCCTCGGA 59 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449 3 1 2 102 8 87205384 87211884 CTCAGTCACCAGGGATCTC 59 87211946 87211968 GTGGTTATGTCTCTGGTATTCAG 59 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 1 2 2 86 16 48122377 48210101 CATGACATCAGGTGATGTGTC 59 48210149 48210167 GCCAAGCAAAGGATTTCCC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 1 2 6 80 12 41258884 41262144 ACTGGTACCAACTGTGTAAGG 60 41258824 41258842 AGGCATAGATCGTGAGCAG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 1 2 6 80 12 41262182 41262200 GTACTTCCTGAATTGGCGC 59 41230420 41262141 TTCTCCTTACACAGTTGGTACC 60 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000072225 2 1 3 107 8 90629291 90629311 GATTAACAGAGCTGCTAAGGG 59 90628668 90629222 GTTCTCTGTGCCTCTTCAG 58 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000066545 2 1 2 81 6 147097888 147099179 GTTTGTGGCAGGAATTGTC 58 147097825 147097843 CACAGGAGGCTTTACACTG 58 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 1 2 2 80 1 219124079 219124581 CTTGAAGTCAACAGATTTGCC 58 219124622 219124641 AATGGATGAGATCTTGGCCT 59 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000023020 3 1 2 90 1 219092508 219104774 GCAATCTTAAAGATGAGGTCCTG 60 219113746 219113764 CCAGAACCATTGCTTCAGC 60 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 1 2 2 80 11 27026480 27026500 TGGTTTCAACTATTCCCTTCC 58 27024745 27026439 AACCATTTGTACAAGCAAGC 58 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201 2 1 2 108 4 65773731 65776148 GGTAAACTTAGGGTTCACGG 58 65773642 65773663 CTCGCTGAACTTCAAATATACG 58 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 2 1 2 80 9 82379874 82380053 GGGACATTGTGAACTTACTGAC 59 82379815 82379835 ACTTGAGGAAGACATAGGTGG 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596 3 1 2 82 10 36589206 36589950 CCTCTCAGGTGTCAGTGAC 59 36589995 36590014 TCTCTGAGACAGATCCAGCT 60 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 2 2 2 80 17 12643344 12653925 AAATTCCTGATCAGGGCCA 59 12643282 12643303 GCGATAGTGTAATACCTTCCCT 60 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000036748 1 1 2 80 2 24709142 24709160 CCCAGCAGGAAATAAAGCT 58 24709206 24711319 CAAATACGTTCTCTTCATCGC 58 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395 1 2 3 131 5 136044831 136046011 ATTTCCCATTCACAGCCAC 58 136044718 136044736 GAATTCCCAGGGTTTGCAG 59 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000043387 1 1 2 84 1 225932030 225937537 GACCCTAAGGAGAAGGAGC 59 225931964 225931982 CCTCTACCTTCTGTCTGCG 60 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000033265 1 1 2 80 4 68818498 68819242 TCTGCTGTACTTCCCACAG 59 68818436 68818454 TGCACATTAGTGGTTCCGT 60 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 3 2 2 80 12 40702375 40703017 TTAAAGCAGCATGTGGAGAC 59 40703058 40703078 CTTGACAACAGAAAGCTCCAG 60 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000025104 2 1 2 84 1 165647872 165649111 GGAGGATCGAACCATCAGG 60 165649159 165649177 GTCACGGATGTAACTGGGA 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000046849 3 1 4 86 1 139924861 139924879 GAAGGGCCATACCAGAAGG 60 139903200 139924814 TGGATTAAAGAGTGTGGAAGCT 60 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 1 1 1 60 8 109456221 109456239 TTACTTCCGACAGTCCCTC 58 109476802 109476821 TGCAATAGGATCTTGAAGCA 57 NA DesignNoJunction Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000084553 3 1 3 80 12 37423594 37423613 CATCCTGCTTAGCACATCTG 59 37420729 37423554 TCATGTTCTCTGATGCATTGTG 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000083401 1 1 3 80 12 37379531 37379551 CTGAAGGTTTCCAGAACATCG 59 37377832 37379491 TGATGATGGTGAACAAAGCTG 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516 1 1 2 80 16 81203044 81203973 TGTCTATCAGACAGAGGTCAC 59 81204013 81204033 CAGCAGTAGCATGTGTTACTC 59 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000040187 2 1 2 80 2 136994073 136994094 CTTGTCTTCACTATCTCCTCCT 59 136994135 136994167 AGTAGGTGGGATGGGTAGG 60 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000050073 2 2 5 80 11 27831376 27831396 TTCTGTGTTTGTAGCCATTGG 59 27812912 27831337 CTTGATGACTTTCCTTTCTGCT 59 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 2 2 2 80 4 34671774 34674300 AGCAACATATCAGACCACTC 57 34671713 34671731 CCTTTGAAGCTCTCATGGA 57 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000051612 1 1 2 80 8 91384941 91387863 CAAAGGCTGATAAAGAGTCACC 59 91387903 91387922 TGCTACTAGGTGTCTCACAG 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398 1 1 2 82 9 104771375 104782581 TCAGTCAACATGGATTAGCA 57 104771312 104771333 CCTTTACCACATAATCATGTCG 57 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 1 1 1 60 13 83200333 83200351 TACACCATCAAGGAGGGAG 58 83199545 83199564 TTCTTAGTCCTCGTTTGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000078244 2 1 2 126 1 201477178 201478413 TATACAGAGGAGCATTCCAGC 60 201478499 201478519 TGGTATAGCTTGAGACCAGAG 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 3 2 3 81 3 48293651 48293674 GCACATCTATTCCCACATGAG 59 48293582 48293600 GTGCTCTTGAGTAAGCTGC 59 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 2 2 3 92 7 14541374 14550368 GAGATTGAATGGGACGACCT 60 14550423 14550441 GGAGATGACTGTGACTGGG 60 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 1 2 2 100 7 117777586 117777604 CTCAGCACAGAAAGCATGC 60 117777668 117777878 GTATGCTTCCTGCAAACGG 60 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 3 1 2 80 16 81225730 81226432 GGCTCTGTGACAAAGATGTC 59 81225669 81225688 AGCTTCCTGGTTTGTTATGG 58 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370 1 1 2 80 7 118165658 118172119 CTATCCAGGAATAGTGTTACAGG 58 118159164 118159182 TGTGCATATCTGTAGGCTG 57 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 2 2 2 80 8 76407611 76407630 AAGGTGGAGAAGTTGACCTG 60 76407672 76409501 TGGGAAGATCATCTTCCCAC 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522 2 1 2 80 1 87932889 87933474 CAGGCACATCAAGAAGAGC 59 87932827 87932845 GAAGGCTTGAAAGTGGCAG 60 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528 1 1 2 97 1 65660759 65661308 GAGTGAATCAGGCCATCTG 58 65660680 65660698 AATGAGCTCATCTGCAAGG 58 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814 2 1 2 100 1 234253386 234377621 GAGCACAAATTGAAGTGATACC 58 234377682 234388937 CCTGAAGAATCCCTTGCAG 58 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814 3 1 2 101 1 234253384 234377616 GCGAGCACAAATTGAAGTG 58 234377681 234388936 CTGAAGAATCCCTTGCAGC 59 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792 3 1 2 83 7 13019976 13019994 GAAGAGTGGGACCCTATGC 60 13020041 13021106 TGGGTGTTTAAGCTTTGCC 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 3 2 2 81 9 92892553 92892575 CCTCAAGTTAATGATGAACCTCC 59 92892615 92893236 CACAAACACCTTGAACACGT 60 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 1 1 2 88 2 118990961 119007789 ATCAGATCCAGGATGCTCG 59 118989247 118989265 CATTTGTATTCGGCCCACG 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000047540 3 1 2 83 1 83112845 83112863 TCCACGAGACTTCATCGAC 59 83112914 83113346 TGGTTCGACTTCTCCTCTC 59 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981 1 1 3 80 1 66253733 66253751 CATAGAGGGAAGCCCTGAG 59 66237473 66253690 TTGAAAGTCACTGGTTCCTG 58 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981 2 1 3 81 1 66253733 66253751 CATAGAGGGAAGCCCTGAG 59 66237472 66253690 TTTGAAAGTCACTGGTTCCTG 59 NA Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241 3 1 2 118 16 18640873 18645733 TGGTTATTCTAAGAAAGGTCCC 58 18640776 18640795 CTCTATTGGGTCATTTGGCT 58 NA InUTR Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277 3 1 2 81 4 67362048 67365127 TCATGGTCCAACAGACAGAC 60 67365171 67365189 ACAGATGCCATGTTCTGGA 59 NA Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000073355 1 1 2 80 1 128672761 128683594 AAGCTAAAGAAGGGAATTAGGG 58 128686473 128686494 ATACAAGAACGTCTCAATCTGG 58 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000078977 3 1 2 88 8 94352240 94368767 ATCTCAACAAGGACTTGGCT 59 94352171 94352189 CTCCTGGTTGACAATGCAG 59 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599 3 1 2 80 2 24055347 24055365 GAAGACCTGAAGCAGATGC 59 24055408 24059058 TGCAATCATCCCAACAATCC 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476 1 1 2 89 4 145715553 145715571 AGAGATAGACCACGCAGAG 58 145714267 145715503 ACTACTTCAATCTGTGTCTGGA 59 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 3 2 2 80 5 8998039 8998057 TGGTGTCTGCTTCATAGGA 58 8990596 8997995 CTTCTGCTCTCCAAAGCTG 59 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 1 2 2 80 14 7234675 7235265 GAACACAAAGGATCTTCTGGAG 59 7234616 7234636 CTTTCCTGGCTTAGAGTTACC 58 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076758,ENSRNOT00000000787 3 2 3 82 20 21789424 21840972 TGAGTTTGCGCCAAATCTC 59 21841018 21841036 CCTTTGAGCCACTGAAGGA 60 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 2 2 3 80 1 86999148 86999166 TAATCCTTGTGGCCCTGTC 59 86999209 86999879 TGCACAGAATCAAACTCCAC 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550 3 1 2 83 8 116372910 116373015 GGATGAGGAGATGAATCGCA 60 116372846 116372864 ATGGAGGTGTCTGTGAACC 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 2 2 2 80 1 89182310 89182330 CAGAACATCATCCCATCTTCC 59 89182120 89182270 TCCTGTTAACTTCCCATTGAG 58 NA Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202 2 1 2 84 16 54114232 54114256 GTCTTACTCATCTAATAGAGCACCT 60 54107335 54114190 TGAGGATCTCTGGCTAGGA 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217 1 1 3 188 4 147686604 147692070 AGACTTCAGGTTCATGGCT 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000086660 3 1 3 81 4 147687631 147689060 ATCACTGACTGGATCTCTGG 59 147692073 147692092 ACTCTGACATCAGGTCACTG 59 NA Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760 1 1 2 80 2 100246432 100249437 ATCCCAATGACAGTTCTGC 58 100246370 100246389 CACAGATGGCACATAGACAG 59 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000019555 3 1 2 85 14 81661775 81662118 TGTTGAAGAAAGGAGAAGGC 58 81661709 81661727 CATCATCACTGCTCACCAC 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 2 2 2 81 13 86450801 86450821 ATTACAGAGCCAAACTCTCAC 58 86444914 86450759 GTGAATTCATTGCATGCCTG 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067189 1 1 6 81 5 150162763 150162781 AGGAGACACAGGAACATGC 60 150156366 150162718 AATCCAGCCATGTCTCCAC 60 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 1 2 2 80 7 138477238 138477259 TCTTACTGTGGCAATTCTATCG 58 138476733 138477199 TCATAGATCAAAGACCCTCCT 58 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000041571 3 1 3 81 4 150719817 150719838 CTTCTTCATTCTGCTCAGTAGC 59 150718429 150719775 GCCTAGGATGTGGTTCCTG 60 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 89 10 109902825 109903324 AACTGAAAGTGGTCGGGAG 60 109903377 109903395 CTTTGAGCCGCAGTTTCTC 60 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 1 3 3 80 2 27025436 27025456 GCTATCATGGGAGTTTCTCCT 59 27025497 27028430 CTGAGGAATGGTTTGCACTG 60 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 1 2 2 80 2 206076488 206076506 AATCTCTTCGAGGCCTCTG 59 206076548 206109304 GTCCACACTTTCACTAGTAGC 59 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 3 2 2 80 9 93105018 93105038 CATTGCGTTAGTGATGTATGG 58 93105079 93106346 AGAATTGGGTCCTTATCACG 57 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425 2 1 3 111 11 35665352 35665373 GGTTAATGCATGCTAGAAACAC 58 35656054 35663527 GGCTCATAAGGTAAATCTGGC 59 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984 1 1 2 80 12 40631517 40631538 CTTGAAGCACATCTAATTGCAC 59 40628107 40631477 GTTACTCAGATTCACCGGAG 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000090755 3 1 2 146 1 263917804 263917987 TACTCCAACATTTGGGCCA 59 263916773 263917694 CAGTCCGGCATATTTCTGG 58 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 2 2 2 107 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844134 147844155 TCGTTAACAAGCTCTAGTTTGG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 2 1 3 80 11 36770796 36770815 ACAAATCGGATGAAGCAAGG 59 36775507 36778520 ATAACACGCATCTCTTCTTTCC 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 1 2 3 82 11 36749240 36749258 TGTGGCAGAGATGAAGGAC 59 36749304 36756783 CAATACTGTCCGGTGGAGG 60 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000040162 3 1 2 81 8 55458329 55458349 ATATGTTCCAGTGGAATGACG 58 55454425 55458289 GTTGTACTTGGTTTATCGTCAG 58 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000082645 1 1 3 80 1 169534404 169534423 TTTGTGAGCGATCTCAAGAG 58 169454327 169534361 GCAGCTTCTCCTTGTACTC 58 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000090323 3 1 3 95 3 43293234 43294086 GGATGTTGAACAGTATAGGATGG 59 43294141 43294159 ATTATAGGCAGCGGAGCTG 60 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 1 3 3 80 8 22427974 22427993 TCCTTGACCATCCATCTGAC 59 22428034 22429338 GTTGACTGATAGCGTTTCTCC 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 1 3 3 80 7 61198290 61199938 TAATGACGAAGATGCAGACAG 58 61199980 61199998 GCTAAAGTCTGGAAAGCCT 58 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 3 3 3 80 2 148048187 148048206 ATCCGGACAAAGAGTCAAGG 60 148046330 148048148 CATTACAAAGACCAAGACTCTCC 59 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000084012 1 1 2 88 7 70372197 70372215 CAACAGTCAAAGTCCCAGG 58 70372267 70372286 TCATATCCTGACCAACCCA 58 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000028277 3 1 2 98 10 89978034 89978052 TTACCCTGAAGGATTCCGG 59 89978114 89987406 CAGGAGAAGCTGGAAAGAC 58 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 1 2 2 80 2 149006667 149010015 ATTTACAGCGTTTCCAAGGAG 59 149006607 149006628 TCTCAAATGTTCTGGAGAGGAC 60 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 1 2 2 80 13 91171739 91195960 ATCTGGAAGTGATTTCTGACTG 58 91171680 91171700 ACCTTAATGTGATGGTTTCCC 58 NA Rattus norvegicus 81 Cs ENSRNOG00000023520 ENSRNOT00000033726 1 1 1 80 7 2776306 2776973 CATCCACAGTGACCATGAG 58 2777017 2777035 AGGTAAGGGTCTGAAAGGG 58 NA Rattus norvegicus 81 Sdad1 ENSRNOG00000022229 ENSRNOT00000030222 2 1 1 80 14 17253110 17253129 CATCAATCCATCGGATCTGC 59 17253172 17254907 GTGTACAGAGTCTTCCGCA 60 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 1 3 3 83 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 LOC100360876 ENSRNOG00000042823 ENSRNOT00000044379 1 1 1 60 X 97075859 97075877 CCTTTCACTGCTGAAGTCC 59 97075898 97075919 CTTTGTGACCAATGATGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3f ENSRNOG00000007548 ENSRNOT00000010468 2 1 1 83 3 138695409 138696613 ATCAGTAAGGTAGAGTTGTCCA 58 138696654 138696675 GATAGTCATATCCACTTTGCCA 58 NA Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000086116 1 1 2 159 7 60737957 60742345 AAGAGACTCTGGTTAGACCA 57 60734902 60734921 CAATACACAATGTGCTGCTG 58 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560 3 1 2 108 7 14363852 14369735 GAGCTACACAGGCTTTGTC 59 14357836 14357854 CCCAGAGTTCCAAGTTCCA 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 1 2 5 80 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664247 28730318 CCACATAACCACTTTGTCCT 58 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000087723 3 1 3 80 10 59533611 59538097 CTTCAGCATAGCACAGAACTC 59 59538373 59538391 CAAGAGGTCCTCAAACTGC 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 2 3 3 120 20 5050802 5050820 CCTCCTGAGGAATCACTGC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919 1 1 2 115 2 116374162 116374582 ATACTCAAACACAGGGTCTC 57 116370566 116370584 GTAGTTCCTTGGTCAAGCT 57 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 2 2 2 80 1 219135375 219135394 TGGATGACCTTTGTCATCTC 57 219135129 219135333 ATGACAGTGAAAGCAGTCTG 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516 2 2 5 80 13 34547528 34547547 TCTCAGCCTAACTCCATTCC 59 34547590 34554366 GTCATAGTCCAGCATGCTG 58 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000080305 2 1 2 82 2 266317853 266353086 AGGAATGCTGATGCTCCAG 60 266353131 266353150 TTATGGTGGTTCTTCCGGAC 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 3 4 5 80 8 99640718 99640737 CGAGAAGTCATGACTCTGGA 59 99640777 99640898 CTGGATTTCTATCTCCTGGAGG 60 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000091896 3 1 2 82 2 211221079 211221100 GGAAGAATAACCTCCGTTTCTC 59 211220519 211221037 GACAAACTCCACCTTCTTGG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655 1 1 2 80 X 26354250 26357945 GAGTAAGACAATTGCGTGAGG 59 26354190 26354209 CTGCCACATCATGAACACTG 60 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 2 3 3 80 1 219856718 219857179 TGGTCTTCAAGTTCTGTGAG 58 219857222 219857240 TTGGCAGGTAGTTAAGGGA 58 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000061657 2 1 2 124 7 3379289 3379307 GGTATACTTGGACCCGGTG 60 3379395 3383229 AGAATCCCAGCTTCCACAG 59 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453 2 1 2 86 7 3382294 3382312 AACCAACTATCACCGAGCC 60 3382362 3383234 CTTGAAGAATCCCAGCCCA 60 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000037559 1 1 2 80 20 53830060 53830078 GAACTGTAACCTCACGCAG 59 53804477 53830017 CGATATGGAGAGCCCATAGG 59 NA Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 1 1 1 63 14 72889366 72889386 GTGAAAGGCCAATTTCATGAG 58 72889686 72889704 ATCTGCATAGGACTGTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000050819 2 1 2 80 X 23524461 23529965 TGAATCCAGCAGTTCTTCCT 59 23524400 23524418 CTGAAGTGGTCAGAAGTGC 59 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 3 3 3 94 8 120444317 120444337 TCAGAAAGTCTGGATGAGGAG 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 1 2 2 80 8 22868391 22868411 GCTGATGACCTAGAACTACTG 58 22867274 22868350 GTCCAACTTTCCATCCTCTG 58 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000090424 3 1 2 81 8 22825596 22825616 CTGGATGAACAAGAGTTTGTG 58 22825447 22825554 TATAGAACTCCTCTAGCCGG 58 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000046377 2 1 2 80 1 99949839 99964792 CATGGGACGAATTGATGCT 58 99949777 99949796 CAGGGTTGGGAATTCTTCTC 58 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001552 2 1 3 80 12 47199189 47203595 GAACAGACAACCTGATAGATCG 59 47204371 47204390 TTGTCCTTGTCAAATTCCCG 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 2 2 2 60 16 47181358 47181379 ATGTAATGAATGTGCGAAGCTC 60 47178445 47178464 TCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 2 3 3 80 10 82245418 82245439 CTGTCAGCAATGTCTTACAAGG 60 82244763 82245378 GAGGAATGTGTTGCTTCGTC 60 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 1 3 3 80 10 82240889 82240907 TGTCACAGTGGAAGAACCT 59 82240434 82240850 GTCAATGAGTCTAGAAATACCGTG 59 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 2 2 2 80 8 61768825 61769541 ATCTCAGAGCATTGATACTCCA 59 61769582 61769600 AAGCCCATGATCAGGTCAG 60 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000087550 2 1 5 109 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420457 4420646 TCTGGAAGGAGAAGTATCTGTC 59 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000015432 1 1 2 112 9 61418681 61528873 CTCAAACTCTGCGATCAGC 59 61383655 61418605 TTCTCAGAATCCAGTGCGT 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299 1 1 2 80 8 87245465 87245484 CCTCATCTTCATTCCCATCG 58 87230036 87245424 TACATAAACACATTGCCCTCG 59 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497 2 1 2 93 9 64695897 64754136 GATTCCCAGGGCTTATACC 57 64777324 64777343 AACAACTGATCTAACTGCGT 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000072848 2 3 8 99 20 4363815 4363833 TCGGAATTGTCGATGAGGG 60 4363895 4364087 CCAGGAATCTGGTAGACTCG 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 1 2 2 80 5 78309546 78310823 AGACCATCAGATTATGGGACTG 60 78309487 78309505 CACAATGGGTCTGGATGTG 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 3 2 2 80 5 78315659 78316111 GCACTTATCTGTACAGCAGG 59 78315598 78315616 GAGCAGGGATGTACTCCTG 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 2 2 2 81 8 130768289 130768307 CAAGCTGTGGATCTCTTGC 59 130768350 130792987 CTCCATATGTCTACTGCAGGG 60 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000072577 3 1 2 84 2 34547130 34559269 CTTCATGGACTGGTGTCCA 59 34559315 34559335 GGGTCACAGAAATTGTTCTGG 60 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 2 2 2 80 5 70338046 70338064 CTTCCGAGTACACTCTGAC 57 70338107 70345598 AGAATGGAATAGGTGCACTG 58 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 3 2 2 82 3 161237438 161238010 GACCCTCATGATGTCTGGT 59 161238056 161238074 CATGGATGGTTCCTACCCA 59 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326 1 1 2 64 8 93491780 93492835 TTTGTTTCTGTCCGAGGTC 58 93492863 93492881 CTCAACTCCTTTGTTGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152 1 2 8 81 20 4485779 4485797 TCTTCCGAGTAGACTCAGC 58 4485842 4485932 TAGCTCATAGAGTCACCCG 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392 2 1 8 104 20 4484119 4484365 TCACCACAGTTCCTGATGG 59 4484433 4484451 TTGTATTTGTCCACCGGCT 60 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 3 2 2 138 2 52379446 52397426 AGCCATACTTCCCATAGCT 58 52397528 52402879 AACATGAAGGATGACAGCA 57 NA Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 1 2 2 80 2 34110113 34110131 GACATGATGAAGTGCGGAC 59 34100636 34110069 ATCGTGCAAAGTCAGTCTG 58 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 1 2 2 80 20 4379800 4379996 TCAAAGAAAGTTTGGGAGTGTG 59 4379741 4379760 ACACTGGTTGACTGTAGGAC 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230 2 1 2 90 20 47659680 47659698 AAGCATGCATTGACTGTGC 60 47659752 47663585 GAAGCAGAGACTGACACCA 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 3 3 4 81 2 53166095 53179746 ATGAAATAGTGCAACCTGATCC 59 53166035 53166053 ATATCTCCACGGATCCCAG 58 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000087718 1 1 2 93 20 47557150 47557168 TGGTGGCTTTACATTGCAG 59 47557224 47558616 TCAGCTCTACCTCTTCTGTG 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 1 2 2 80 8 132526435 132526866 ACATAGATTTCACAGGTCCTACTC 60 132526904 132526923 ACTTGCTCATCTTCTCCCAC 60 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 2 2 2 80 8 132526436 132526866 CATAGATTTCACAGGTCCTACTC 58 132526906 132526924 GACTTGCTCATCTTCTCCC 58 NA Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 1 1 1 60 16 75120348 75120369 ATTGTAGTTGAACTGCCATCAG 59 75119951 75119972 CTGGAAATGACTGGGAATACTC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494 1 1 3 131 20 155176 155194 TTTCTTGGACCTTTGGCTG 58 154541 154905 ATAAACCATCACTGGAGCAG 58 NA Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 2 1 1 97 16 75241244 75241262 TTTCTCCTATGCCACTCCG 59 75227545 75227566 CATTGAGACAGAACCCTTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 2 1 1 86 16 75465835 75465853 GTCTGTCTCCTTTGAAGGC 58 75466488 75466506 AAACTTCTGCAATGGCACC 59 NA DesignNoJunction Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 2 2 2 80 16 62026499 62056606 AAGAATGCTTTGAACGGCA 59 62056650 62056668 CTTCGTGTTTGCCTTAGCA 59 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615 2 1 2 80 5 101023609 101023627 GACCGTATTCTCCAGGAGG 59 101020635 101023567 TGGTTCTTCAAGCCTATCCAG 60 NA Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 2 2 2 83 16 81046500 81046520 ACATTAGGAGAATTTGGCGTC 59 81046565 81054932 TCTCCACACCTTTCTCAGC 59 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769 3 1 2 80 3 66722432 66773300 TATGAAAGGAGTTAAGCACCTG 58 66773341 66773359 TCTTCTCTTTCACTTGCGC 59 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 2 2 3 101 3 150853790 150855175 GGTATTTATGATAACAGATGCCCTC 60 150850108 150850128 AGCTCTAGGAGAAGTTTCTGC 60 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 2 2 2 91 16 80751529 80751549 TGGAAAGAAGCAACATCTCTG 59 80751601 80753103 CGTACGTTAGTTCCTTTGGA 58 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000012739 1 1 2 80 3 153582305 153582324 ACTATGAGTCACGGACAGAG 59 153582364 153586780 AGTCTCCCTCTGTGTTATTGAC 60 NA Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 3 2 2 115 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528553 75528571 CAACAGAGTCGGTAGATGC 58 NA DesignRelaxed Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 1 2 2 80 3 176915011 176925761 GAGACTCAAATGTGGACCTC 58 176914950 176914968 GATGAGCATAGAGCTCTGC 58 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 2 2 2 86 16 66230931 66230950 AAGTGTCAATTCGAGAGGGA 59 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000008959 1 1 2 178 3 170998858 170999473 CTTACGCAACCAAGAGTCC 59 170999612 171000001 TGTAGATATCACATGCAGACTC 58 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000089065 3 1 2 101 3 64362879 64363033 TGAGGAGATCCTTTGGCAG 59 64362796 64362815 TAAACGGTTTGATGTCCAGC 59 NA Rattus norvegicus 81 AY172581.15 ENSRNOG00000032274 ENSRNOT00000042644 3 1 1 60 MT 3843 3862 CAGCTAACTAAGCTATCGGG 58 3883 3903 TAGTACGGGAAGGGTTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000053163 ENSRNOT00000086511 2 1 1 66 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490246 150490265 AAATTGTTTCTCTGGGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058595 ENSRNOT00000087401 1 1 1 60 5 3686316 3686335 ATCACATGTTCATCAGTGGT 57 3686353 3686376 TAGATCAGGACACTGAGTATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054535 ENSRNOT00000081009 3 1 1 60 5 22905640 22905658 TCTGACCTCTGCGATTTCC 60 22905598 22905619 CACCAACTACCACAATTTATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055744 ENSRNOT00000092215 3 1 1 60 5 42395580 42395598 TACGAGTAGCTTTGCTCCC 59 42395622 42395640 TCCTACAGTGGACCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058638 ENSRNOT00000086855 3 1 1 60 2 181786388 181786407 CAAAGAGGACAACCTTTCCC 59 181786427 181786448 CTACTCGCTATACCCTTGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009834.1 ENSRNOG00000061630 ENSRNOT00000082148 1 1 1 60 2 114386092 114386113 ACTTGTGTCCTTATAGAAACCC 58 114386132 114386152 TCCCAGTCAGTCACATAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058614 ENSRNOT00000087708 3 1 1 60 8 111512139 111512160 GGAGACTATGTCTATGCTCCAG 60 111512100 111512120 GTTAGGCTACTAACCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059004 ENSRNOT00000078950 3 1 1 93 2 240904134 240904155 CTAAGAGCAAGTGTGGTATCTG 59 240904062 240904080 CTACACAGGCAAAGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060810 ENSRNOT00000088888 3 1 1 60 5 140987451 140987469 ACTCAAATCTTTCCCAGGC 58 140987493 140987511 TACTATTGCACTGCCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054323 ENSRNOT00000079868 1 1 1 60 8 120775782 120775803 CAGATGACAGAGAAGAGAAAGG 58 120775824 120775842 TCAGATGTCCACACGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070060.1 ENSRNOG00000052582 ENSRNOT00000080059 2 1 1 93 8 47036266 47036574 GAAAGCAAAGACCAAGCTG 58 47036631 47036649 GATGTAGATCTTCTGGCGG 58 Novel Rattus norvegicus 81 SNORA18 ENSRNOG00000061688 ENSRNOT00000088935 1 1 1 60 8 13868608 13868629 ACGCCTCATATAGTAACTTGTG 58 13868648 13868668 CCACAGACCTAACAAACAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000060264 ENSRNOT00000091566 2 1 1 62 11 86761003 86761021 AAATGGCTCCTGCCTACAG 60 86760959 86760979 ATGTATGGAGTCATTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059647 ENSRNOT00000084679 3 1 1 60 11 56105885 56105905 ATACGGCAGATATTAGCATGG 58 56105926 56105945 GGAATGCTTCCTGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060368 ENSRNOT00000079018 1 1 1 60 5 169380864 169380883 CTCCTGTCTTCAGTCAAGGT 59 169380823 169380844 CTTGTTTGGTGGTTGTAGTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056882 ENSRNOT00000079314 2 1 1 61 5 139827987 139828005 TGGAACAGAGACGATTAGC 57 139828028 139828048 CGAATGCTTCACAAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000054737 ENSRNOT00000077341 1 1 1 64 8 96238795 96238815 GATGATCCTATCCCGAATCTG 58 96238751 96238769 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057521 ENSRNOT00000080149 2 1 1 60 8 62185770 62185790 GCAACCAAATTTAGCCATCAC 59 62185730 62185749 CATGAACAGTGAAGGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054813 ENSRNOT00000089220 1 1 1 99 5 50651456 50651474 AATGAGGTTTATCCGAGCG 58 50651537 50651555 AAAGTACCATAGGCTGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054199 ENSRNOT00000081328 1 1 1 60 2 84226315 84226333 GCTGATCCCTGTGATTTCC 58 84226273 84226292 CCTACTGCCACAAATTATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054528 ENSRNOT00000091045 1 1 1 60 5 173404868 173404890 GGTGTTGCTCTTATATCAGTCAG 59 173404830 173404850 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058534 ENSRNOT00000090841 3 1 1 60 2 250960750 250960771 GATCAAGGTTCATTTGAGTAGC 58 250960788 250960810 CCTAGTCAGTCTTATCAGATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056304 ENSRNOT00000079441 3 1 1 60 16 47057388 47057407 CTGTGTCACGTGTACATCAG 59 47057428 47057448 ATACTGAGCTCAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053847 ENSRNOT00000079303 2 1 1 60 2 83035341 83035360 TCAATACCTGGCAGAAAGGA 59 83035300 83035319 GTGTTCACAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053847 ENSRNOT00000079303 3 1 1 60 2 83035340 83035360 TCAATACCTGGCAGAAAGGAG 60 83035300 83035319 GTGTTCACAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054357 ENSRNOT00000086467 3 1 1 60 8 109820173 109820193 ATATGTGTCAGTAGGTGGCAG 60 109820133 109820151 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061140 ENSRNOT00000077299 1 1 1 60 16 37035381 37035400 CTGGAACATCTATCACCTCC 57 37035340 37035358 GCCTAGCCAGACAAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055926 ENSRNOT00000090491 1 1 1 60 X 29175800 29175818 GTGGCTGCAAACAGTATCC 59 29175840 29175860 CAAGTTCTCCTAGAGAAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060954 ENSRNOT00000091276 2 1 1 60 8 17692172 17692190 TCGTACTGTAGCTGTTGGT 58 17692130 17692150 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053894 ENSRNOT00000085287 1 1 1 60 X 130545542 130545562 TTCCCAAGGTGAGATTATTGC 58 130545584 130545602 CCATCTCAAATGGCTGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058620 ENSRNOT00000089247 3 1 1 63 16 21397296 21397314 GCCAATGAGGTCTATCCGA 59 21397251 21397269 CTACAGCTGCCACATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058409 ENSRNOT00000080354 3 1 1 67 8 37411055 37411073 GTGCTTACCTCAGCATCAC 59 37411006 37411024 TGTCATCGTTGTGTAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061762 ENSRNOT00000090049 1 1 1 60 8 117213340 117213364 GCTGACTAGATTCCTTTCTTTATGG 60 117213304 117213323 AGCTACTTATGTTTGCCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000057375 ENSRNOT00000083819 3 1 1 80 X 106471718 106471736 AGGTAGAAGAAAGGGCTCC 58 106471780 106471798 TCTGAGGATAGAACCTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000060595 ENSRNOT00000089915 2 1 1 63 16 6742866 6742887 ACTTAGTATGCCATACTGTGTC 58 6742824 6742845 TCTTTATGGTCATATCCACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam34l ENSRNOG00000056277 ENSRNOT00000078614 3 1 1 60 16 51732335 51732353 CCATGAAACACTGCATTGG 58 51732375 51732395 ATGATAGTCCATAGTCCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059821 ENSRNOT00000081575 3 1 1 61 8 22717963 22717985 GGAATAAAGAGGCTTAGTATGGC 59 22717924 22717945 ACGGAATATTCGCAGATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049473 ENSRNOT00000073795 1 1 1 60 2 230213363 230213383 TGATCTTAGAAGCTAAGCAGG 57 230213405 230213423 TAACCTCAGTTCTCCCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059131 ENSRNOT00000080823 1 1 1 73 16 55208589 55208609 CGGTCAGCCACTATAATAAGG 58 55208644 55208662 ATTTGCGTGTCGATCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.1 ENSRNOG00000051568 ENSRNOT00000079345 3 1 1 60 1 155954912 155954933 GAACAGAAGATAGAAGAAGCCA 58 155954873 155954892 CAAGAACGAGAGTCTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060581 ENSRNOT00000084808 3 1 1 61 17 21251929 21251951 TAGAAGGGTACAGAGAAGATCAG 59 21251890 21251908 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000060031 ENSRNOT00000079563 2 1 1 60 1 101121188 101121209 TGATGGTATATTCTCACGATGG 58 101121149 101121168 CTCAGCCTTTGGCATTATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058633 ENSRNOT00000086110 3 1 1 60 2 176084986 176085008 GATACAGAGAAGATTAGCATGGC 59 176084948 176084966 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067082.1 ENSRNOG00000048948 ENSRNOT00000075106 3 1 1 60 9 29585108 29585126 ACATGGAAACAACCCTGGA 59 29585066 29585087 CTTGTATCTACAGCTCCTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072362.1 ENSRNOG00000052980 ENSRNOT00000071557 1 1 1 81 14 2539052 2539074 TCACCTCACACCAGAATGG 59 2539118 2539137 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000056839 ENSRNOT00000083234 1 1 1 66 9 16957438 16957456 TTTGGTTCCCTGTCCTTGG 60 16957485 16957504 AGACCTTTCCAAATCCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.2 ENSRNOG00000061395 ENSRNOT00000080105 3 1 1 67 1 156001033 156001051 CTCTTGGAGGGTCACTGAG 59 156000984 156001003 CTCCACTAATATCAGACGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058813 ENSRNOT00000090286 2 1 1 60 6 75106676 75106697 CAGTGGAGATAACACAATCACC 59 75106717 75106736 GAGTGCAATGGATAAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052045 ENSRNOT00000088750 1 1 1 60 9 112717746 112717764 GGCTGCTATGTCACATGTG 59 112717704 112717723 GAGCATAGACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057374 ENSRNOT00000089691 1 1 1 60 X 3465660 3465679 TGTTCTTGATTTGGAGGCAC 59 3465619 3465637 GAGGCCATGCTAATCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057793 ENSRNOT00000082820 3 1 1 60 4 116782904 116782923 TGCTTGTGACATCTGTAACC 58 116782946 116782964 TAGCTAGCCATATCAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053335 ENSRNOT00000091974 2 1 1 60 4 46079781 46079799 TTCAGCAGGACATTCACAG 58 46079739 46079758 CCCTTGACTAGGATTGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054184 ENSRNOT00000087899 3 1 1 60 9 79560196 79560214 AGTTGGAATAGGAGCTTGC 58 79560237 79560256 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000076775 1 2 4 93 7 115874080 115874351 TAACTCAAAGACAGGGTGC 57 115874005 115874023 TTTGGAAGGGAAACAGAGC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054554 ENSRNOT00000077271 3 1 1 61 9 40543276 40543294 TTTCAGCACAGATGCTGGA 60 40543319 40543337 CATCCTTGACCAGGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008099.1 ENSRNOG00000048490 ENSRNOT00000071308 3 1 1 61 2 42830346 42830364 ATCCAGAGGGATCCATGAG 58 42830388 42830407 TGCGAATATCCACATCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000052635 ENSRNOT00000081700 1 1 1 60 X 13904825 13904844 TGGCTGGATTCTATTCTCCT 58 13904784 13904802 CCGACACTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061723 ENSRNOT00000090585 1 1 1 60 6 8351892 8351911 ACAGAGGTGATTGGTATGGC 60 8351932 8351952 ATACAACGCTTCTCAGATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061723 ENSRNOT00000090585 2 1 1 60 6 8351893 8351911 CAGAGGTGATTGGTATGGC 58 8351932 8351953 CATACAACGCTTCTCAGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059367 ENSRNOT00000090976 1 1 1 70 2 198524228 198524246 AGGCTTATCCACTGCACTC 60 198524176 198524194 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059367 ENSRNOT00000090976 2 1 1 71 2 198524228 198524246 AGGCTTATCCACTGCACTC 60 198524175 198524193 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.3 ENSRNOG00000053248 ENSRNOT00000087454 1 1 1 103 18 25360548 25360567 TGTATTACTCCAGCACTCAC 57 25360457 25360478 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070085.1 ENSRNOG00000052246 ENSRNOT00000092188 2 1 1 60 8 50526672 50526690 AAGTGTCTTCAGGTGGTCG 60 50526630 50526648 CAAGAACCACCCTACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056181 ENSRNOT00000088810 2 1 1 60 3 31041569 31041587 GTAAGACCACACTCCACAG 58 31041527 31041548 GGCCACAATATAGTAATGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044954 ENSRNOT00000070221 3 1 1 60 X 21674868 21674887 CCATGCTATCTTGAACCCAC 59 21674910 21674928 AGAACCAACACTGCTTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031734.2 ENSRNOG00000042376 ENSRNOT00000065447 2 1 1 60 18 30838421 30838443 GATATCAGTACTCTTCCTCCTGG 59 30838464 30838482 TGATCTGGAGGAGTGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC119015.2 ENSRNOG00000059270 ENSRNOT00000084836 2 1 1 80 10 76363927 76363952 CATCTCACTCTCACAGAATTGAG 59 76363990 76364010 TCTCTTCCATGTTGGAATGAC 58 Novel Rattus norvegicus 81 AABR07073392.1 ENSRNOG00000051478 ENSRNOT00000085294 1 1 1 111 8 46757401 46757419 GTACAAACCAAGGCAGAGG 59 46757098 46757116 CCCGTCATTTCTACTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027494.1 ENSRNOG00000061243 ENSRNOT00000077100 3 1 1 92 17 34155591 34155609 TTAAGCGAGAGGTTTGTGG 58 34155665 34155683 AGATCTACCAGTTCCTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057907 ENSRNOT00000088990 1 1 1 60 X 85538756 85538775 CTTCATTAGGTGCCAGACAG 58 85538715 85538733 TGTTCATTGGTCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052324.1 ENSRNOG00000049891 ENSRNOT00000071774 3 1 1 63 3 47572505 47572523 CACAACCAACAGACTGGTG 59 47572460 47572478 GAGTGAGCCACTCAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055960 ENSRNOT00000091895 1 1 1 60 X 77683561 77683581 GGCTAAACTCACTCATTTCCC 59 77683521 77683541 TTTCCCACATGGAGAAATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000087649 1 1 2 60 5 47847425 47847448 CTCATATTCTTGAGTCGTCTTGAG 59 47848501 47848519 TCACCAGGTACACTTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD59 ENSRNOG00000057249 ENSRNOT00000089900 1 1 1 60 7 2506342 2506363 GATGATTAGCTTCTGACTTTCG 57 2506384 2506402 TCTCAGGAATGGCATCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 3 1 1 87 10 101989785 101989806 GTTCTTACCCAGGACCCAG 59 101989858 101989877 CATTCCAGAGCCTTAGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058225 ENSRNOT00000087896 2 1 1 60 6 80726573 80726594 ATACAGAGAAGATTAGCATGGC 58 80726534 80726553 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041374.1 ENSRNOG00000049682 ENSRNOT00000071553 3 1 1 72 X 127804079 127804097 CTCAGCATTAAGGTGGGTG 58 127804133 127804151 AATGCATCAGGGTAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055256 ENSRNOT00000082249 1 1 1 60 X 76845046 76845065 TTGGAGCTAAGAGATGGGAC 59 76845088 76845106 AAATACCAGGTCGATGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053829 ENSRNOT00000078373 1 1 1 60 16 81591641 81591665 CAGACTAAATTAGAAGGACACAGAG 59 81591683 81591701 AATTTGCACCCTATCCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051788 ENSRNOT00000087195 2 1 1 60 2 47297122 47297144 GGACAAAGAAGAATAGTATGGCC 59 47297163 47297182 TTAATGCTTCGTGAGTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056780 ENSRNOT00000087395 2 1 1 60 2 115807768 115807788 TTTGGTTGGTACCATGATCAC 59 115807809 115807828 GAGTGCAATGGATAAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.2 ENSRNOG00000039472 ENSRNOT00000060488 3 1 1 60 18 30556600 30556619 TCATCTCCATCAATGCTGAC 58 30556641 30556660 GCTTCGTAGTCTAATGCCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056315 ENSRNOT00000090261 1 1 1 60 2 223523979 223524000 AAATTGGAACGATACAGAGGAG 58 223523940 223523958 CGAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057172 ENSRNOT00000078873 1 1 1 60 8 36342857 36342876 GGTCCTTTGTTCATCCTAGC 58 36342896 36342917 CCTAGACATAAGACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044889 ENSRNOT00000070156 3 1 1 60 9 81051957 81051977 GAACATGACCACTCTCATCTG 59 81051999 81052017 CAAGTAGTAAGCAGGCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052027 ENSRNOT00000090353 1 1 1 60 8 70698757 70698778 CAGATCGTATAAATCTTTCGCC 58 70698718 70698737 ACTCAGAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056414 ENSRNOT00000084714 2 1 1 86 9 19961952 19961970 CGTGGCAGTATTGTAACCA 58 19961884 19961904 TTTCTTACCTCATTTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030779.1 ENSRNOG00000047029 ENSRNOT00000074339 3 1 1 63 10 104003790 104003808 GTCTGCGTGTTGTTATGCC 60 104003745 104003763 CCTATTCGTGGTGTCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060300 ENSRNOT00000081720 1 1 1 60 4 166666774 166666795 TCTTAGTGGTAGATCACTTGGC 60 166666735 166666754 TAATTCTCACAGCTAGCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060300 ENSRNOT00000081720 3 1 1 60 4 166666773 166666794 CTTAGTGGTAGATCACTTGGCT 60 166666734 166666754 TTAATTCTCACAGCTAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003056.2 ENSRNOG00000059987 ENSRNOT00000086126 1 1 1 60 1 95455655 95455674 AGAGGAGACTCTACAGGGAC 60 95455697 95455715 TTACCCAAGAACAGGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000061788 ENSRNOT00000080151 1 1 1 60 2 18938120 18938144 GGAATGTATCCATAACATGCTACAG 60 18938162 18938180 ACTGTAAGGTTGGTAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141334.4 ENSRNOG00000058960 ENSRNOT00000086239 1 1 1 62 10 36691084 36691102 CATGAAAGCTGGTTCCCAG 59 36691426 36691444 GTACACAGGGAGCATGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD49 ENSRNOG00000057240 ENSRNOT00000081324 2 1 1 60 10 48927730 48927752 GAAACTAGAAATAGGAAGTGCCG 60 48927769 48927790 GTCAGCTAAATAGAGATGTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059522 ENSRNOT00000082224 3 1 1 60 2 144607776 144607798 GATACAGAGAAGATTAGCATGGC 59 144607738 144607756 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059751 ENSRNOT00000090091 2 1 1 60 10 24938200 24938218 AGGTTGATCTGGCTGTCTG 59 24938158 24938179 CTTCAGCAACAATACAAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054608.1 ENSRNOG00000052603 ENSRNOT00000091109 3 1 1 60 3 163138928 163138947 GTGACGGTGAGACTTAAGTG 58 163138970 163138988 AGCCATCAATGGAGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062395.1 ENSRNOG00000043616 ENSRNOT00000068883 3 1 1 81 4 174283846 174283865 TTGCCTTGTTGAAGGAAGTG 59 174283909 174283927 AGAGGGAATGCCACTAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.2 ENSRNOG00000057986 ENSRNOT00000073132 2 1 1 94 12 2643870 2643889 ACCTAAAGAAAGAGATGCCC 57 2643791 2643816 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000061606 ENSRNOT00000078146 2 1 1 60 4 167223412 167223432 CAAGAGCCCTAGAAGTTACTG 58 167223454 167223472 TTCATGTGTCATCCCTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059755 ENSRNOT00000087039 1 1 1 60 4 71164781 71164801 ATACAGAGATGATTAGCACGG 58 71164821 71164841 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059755 ENSRNOT00000087039 3 1 1 61 4 71164780 71164801 AATACAGAGATGATTAGCACGG 58 71164821 71164841 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057916 ENSRNOT00000080903 3 1 1 60 2 174185078 174185099 GAGTGACATCTGTGTTACACTG 59 174185119 174185138 TAAGACATAGCCTCTCACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054741 ENSRNOT00000089782 1 1 1 60 4 102139437 102139456 GCCAATGTTGTTTCTGTGTC 58 102139396 102139416 AGACATAGCCTTTCTTCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051374.1 ENSRNOG00000046993 ENSRNOT00000072640 2 1 1 60 3 6980035 6980054 ATTACCCTCTGTACATCCGA 58 6979994 6980013 ACCATGTAGTGGAACTTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit1lb ENSRNOG00000036603 ENSRNOT00000076802 2 1 1 80 1 252916828 252922406 GCACCATGAGTGAAGAATCTC 59 252916768 252916787 CCAACTCCCAAGTAAAGTGG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056741 ENSRNOT00000077432 3 1 1 60 4 26317950 26317969 TGAACGTTCTCCACATTCTG 58 26317991 26318010 TACTCAGTTCCCGACTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053854 ENSRNOT00000084639 3 1 1 60 6 133820664 133820683 ACCAATGATGAGATCTGGTG 57 133820704 133820724 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058504 ENSRNOT00000091658 2 1 1 60 10 57329905 57329925 ACAATGCAGAGATTAGCATGG 59 57329945 57329965 TGGAAGCTGCATGAATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057283 ENSRNOT00000082619 2 1 1 60 6 77437730 77437749 GCTGTGTCACATGTACATCG 59 77437770 77437790 GTCAGACCACTGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057283 ENSRNOT00000082619 3 1 1 60 6 77437737 77437756 CACATGTACATCGGTCAGTG 59 77437777 77437797 ATCACATGTCAGACCACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065776.1 ENSRNOG00000006321 ENSRNOT00000008286 1 1 1 82 6 140934816 140934836 AGACCTAAGCAAACTACAGAC 58 140934878 140934901 ATTTCTTCCCGTCTTCTATCC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000054448 ENSRNOT00000091420 2 1 1 60 1 92720939 92720959 ACACTTGGTCAGTGAAGTAGG 60 92720978 92720999 TGCTCTTGATTGAAGAATGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054448 ENSRNOT00000091420 3 1 1 60 1 92720995 92721015 GAGCATAAGAGAAGCTACTCC 58 92721035 92721055 TTCATGGGACTTTCTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000054406 ENSRNOT00000078410 1 1 1 61 17 37186466 37186484 GTGAGTTCCTCTTCAAGGG 58 37186509 37186527 TTTCTTCCAAGTTGCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053558 ENSRNOT00000079317 1 1 1 60 17 68027427 68027447 ACTGTGTCATATGCACATGAG 59 68027466 68027487 AAGTCTGGACACAGACATAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058514 ENSRNOT00000082646 3 1 1 60 17 60418315 60418338 GACTTACTTCCTGGAATAGAGGAG 60 60418278 60418299 GGAGCATAGCTACTCTATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052874 ENSRNOT00000089848 3 1 1 60 2 3008178 3008196 TCACATGTGCATCAGTAGG 57 3008136 3008157 TCAGAACACTGAACATAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027633.1 ENSRNOG00000049875 ENSRNOT00000072320 3 1 1 60 17 39668876 39668897 CTAGTTCAGCTGTTTGATCCTC 59 39668837 39668857 CATCATGGATGAGAAGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051833 ENSRNOT00000080178 1 1 1 60 17 48581627 48581648 TATGTGACAGAGTGGAAAGAGG 60 48581588 48581606 TCACATGGTCATAGGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.4 ENSRNOG00000053995 ENSRNOT00000087233 1 1 1 61 17 44696377 44696395 GAGAAAGCATGCTCCAGTG 59 44696414 44696438 CACATATACTGCTGTATAAGTACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051803 ENSRNOT00000089130 2 1 1 60 17 62530689 62530710 CTAATATTGAGGCCTCCTATGG 58 62530650 62530669 GGAAACTCACCTCCCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053757 ENSRNOT00000082756 2 1 1 60 3 122805523 122805543 ATAAACTACCCTGTGTACACC 57 122805563 122805583 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043421.1 ENSRNOG00000046533 ENSRNOT00000072378 2 1 1 60 19 28220651 28220672 ATCCTGAAGAACGAATGAATGG 59 28220784 28220804 ACATCTTCAGAGGTGTAAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AC109958.1 ENSRNOG00000021960 ENSRNOT00000030811 2 1 1 89 13 93560585 93560609 CTCAGCTACTCTACAAATTTGAGAG 59 93560519 93560538 CTCCAATTCGAACCTGGGA 59 Novel Rattus norvegicus 81 AABR07004437.1 ENSRNOG00000060573 ENSRNOT00000089410 2 1 1 76 1 142893755 142893773 CACATTCATGCATGCACAC 58 142893697 142893717 TGAGTTTGTGAGTGCATTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055919.1 ENSRNOG00000059181 ENSRNOT00000086553 2 1 1 79 7 15856607 15856627 GGACTATGTTGGATTCCAGTC 58 15856356 15856568 CTCTATGGAGATCAGGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07055919.1 ENSRNOG00000059181 ENSRNOT00000086553 3 1 1 80 7 15856609 15856628 TGGACTATGTTGGATTCCAG 57 15856356 15856568 CTCTATGGAGATCAGGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000054952 ENSRNOT00000087377 1 1 1 60 10 32973038 32973060 GATGTCCTGATTCCTAAGATCTC 58 32973000 32973020 CTTCAACAATCTATGCAGTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054492 ENSRNOT00000085592 2 1 1 60 1 94762556 94762577 ACCGATACAGAGAAGATTAGCT 59 94762598 94762616 CGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361864 ENSRNOG00000042588 ENSRNOT00000078890 1 1 1 80 14 22654446 22655711 ATGGCCTTCTTGGTCATCC 60 22655750 22655773 CATGATGGATTGACTCATAGATGC 60 Novel Rattus norvegicus 81 AC132980.1 ENSRNOG00000059512 ENSRNOT00000074001 1 1 1 66 2 194014350 194014369 CAATGGTAGAGTCACATCCC 58 194014301 194014324 AAACACTGTATAGAATCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054266 ENSRNOT00000091090 1 1 1 60 10 67489770 67489788 CTGTGTCTGTCACATCAGG 58 67489812 67489830 GCTTCTGAACACTGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Btnl5 ENSRNOG00000049946 ENSRNOT00000088972 1 1 1 88 20 2942099 2942118 AATTTACTGCAAGCCCTCTG 59 2940637 2942048 GGAAACCCTTTGTGGTCAC 59 Novel Rattus norvegicus 81 AC096030.1 ENSRNOG00000018612 ENSRNOT00000025109 1 1 1 86 1 167918166 167918186 CACCACTCCTACTGTCACC 59 167918098 167918116 GATCATGGCAGTCAGTCCA 60 Novel Rattus norvegicus 81 LOC100362319 ENSRNOG00000061737 ENSRNOT00000081360 2 1 1 60 8 43660949 43660967 TTCCACGGTCATTACTCCC 59 43660990 43661009 GGAGATGGTGTTCTTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061841 ENSRNOT00000090099 1 1 1 60 2 71271608 71271626 AGAGACTTTGACAGCCCAG 59 71271648 71271668 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061841 ENSRNOT00000090099 2 1 1 60 2 71271575 71271593 CATGGGATCTCCAACTGCA 60 71271617 71271635 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005758.2 ENSRNOG00000060297 ENSRNOT00000083692 2 1 1 61 1 196471601 196471622 ACATGATGGGTTCAATGATGTC 59 196471561 196471582 CTTTCAAGGTGAAAGACATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076282 3 1 2 91 4 32371501 32371519 ACTCACTTAGGTCCAAGCT 58 32336617 32336635 TTTCCCTCTGGTTCTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000058623 ENSRNOT00000090994 1 1 1 60 1 86776344 86776366 CAGATTGAACTCCTGTTCTACAC 59 86776385 86776404 TTTAGGCCAATCAAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061847 ENSRNOT00000080992 3 1 1 60 2 93817926 93817947 GATACAGAGAAGACTAGCATGG 58 93817966 93817986 GGAACCTTCATGAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052508.1 ENSRNOG00000061770 ENSRNOT00000088345 2 1 1 95 3 58380162 58380182 CTCAAGCAGCAATCAGATCTC 59 58380239 58380258 GACCTGGGATTCTGGACAC 60 Novel Rattus norvegicus 81 SNORA81 ENSRNOG00000051870 ENSRNOT00000082770 1 1 1 60 12 30194168 30194189 AAGAGTAATTAACTGCTCTGGG 58 30194209 30194228 CACTGGACCTTAGGAAAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044501 ENSRNOT00000069768 2 1 1 60 10 58847791 58847809 TGTCTGATCTTGGAAGCTG 57 58847833 58847851 CATCTCAACTCCATCCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059646 ENSRNOT00000090354 2 1 1 60 14 20034957 20034975 TCACATGTGCATCAAGGAG 58 20034915 20034939 CAGAACACTGAATGTAGACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058528 ENSRNOT00000078480 3 1 1 60 1 115490144 115490165 TGCTGTGTCACATGAATATCAC 59 115490105 115490124 ACTGAATGTAGACATAGCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035427.1 ENSRNOG00000047489 ENSRNOT00000074546 2 1 1 65 12 14102122 14102140 TTACTGTGTAGACCAGGCT 58 14102169 14102187 TAGCACTTAGGAGGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968,ENSRNOT00000076937,ENSRNOT00000041963 2 3 3 81 X 65425919 65430832 GGATGATGGAGAACACGCT 60 65425856 65425876 GGTCAAATCCAACTGAATGGT 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968,ENSRNOT00000076937,ENSRNOT00000041963 3 3 3 81 X 65425918 65430831 GATGATGGAGAACACGCTG 59 65425855 65425875 TGGTCAAATCCAACTGAATGG 59 Novel Rattus norvegicus 81 SCARNA16 ENSRNOG00000061622 ENSRNOT00000081692 1 1 1 60 10 106022244 106022265 AATTTGCAGTAACAGGTGTGAG 60 106022283 106022304 GTTTGCAGTATCATACATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059171.1 ENSRNOG00000008946 ENSRNOT00000011839 1 1 1 60 4 6477780 6477799 GAACTTTGGCTCATTTCCGA 59 6477739 6477758 GGTCCATTCACATCTTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000054649 ENSRNOT00000092055 3 1 1 66 10 15536676 15536694 CATGGGATCTCCAACTGCA 60 15536628 15536647 AACTGCTATGATGACCTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0635.2 ENSRNOG00000051341 ENSRNOT00000076867 3 1 1 60 X 62820654 62820673 AGACTTGCCATTCTATGACC 57 62820696 62820714 CTTCCTGTAGCCACAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053994 ENSRNOT00000083918 3 1 1 76 1 158057532 158057550 AGAAATGTTGCAGGTGTGG 59 158057474 158057494 TGAGCATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057675.1 ENSRNOG00000054487 ENSRNOT00000088893 2 1 1 84 7 83682337 83701148 GTCTGCAAAGGAAACGATGG 60 83682272 83682290 AATAAGCGACCATGAGGCA 60 Novel Rattus norvegicus 81 U6atac ENSRNOG00000057704 ENSRNOT00000086024 2 1 1 60 2 227587046 227587070 CCTGACAACAGACATATAGTTAAGG 59 227587010 227587029 CCACAGTGGTTAGATGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000061806 ENSRNOT00000077178 2 1 1 63 1 1628184 1628202 TTTGCTGTGGACATGACCA 60 1628139 1628159 GCTAGACAAGGAGCATATGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035312 ENSRNOT00000053435 1 1 1 60 14 93047349 93047367 CCTGAACACGTCCAAACTC 59 93047307 93047325 GTACTAACCAGGCCAGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056439 ENSRNOT00000079129 3 1 1 60 1 53939999 53940018 GAACAGTGCAGAGATTAGCC 59 53939958 53939976 AACACTCCAGGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054482 ENSRNOT00000086166 3 1 1 60 17 17451809 17451827 GGATGGCTAAGCAAGTTGC 60 17451850 17451869 TCCATTCCAGCAAATTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 1 2 2 85 4 114818608 114818767 ATGAACTCTGGTGGTTCTG 57 114818541 114818559 GAGTTTAGCTCTTCGGTGG 58 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054851 ENSRNOT00000081083 3 1 1 60 2 197209888 197209906 TTAGCGGTGGATCACTTGG 60 197209927 197209948 ATTAATTCTTGCAGCTAGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051700.1 ENSRNOG00000052969 ENSRNOT00000077990 2 1 1 60 3 19495844 19495862 ACAATCAGCTCCATGGAGG 60 19495885 19495904 AACTACTCCTCTGCAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053613.1 ENSRNOG00000048921 ENSRNOT00000071786 2 1 1 60 3 116072614 116072632 ACACATGGAAACAACCCTG 58 116072653 116072674 TGTATCTACAGCTCCTTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059051 ENSRNOT00000083185 2 1 1 60 1 257475995 257476015 ACTTGGGTTTCTTACAAAGCC 59 257476037 257476055 GAGCACAGTTTGCTCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058596 ENSRNOT00000085604 2 1 1 75 17 1818383 1818401 GCTCACTTTGACAACACGT 59 1818326 1818345 TATATGCCAACCTTGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072363.1 ENSRNOG00000041613 ENSRNOT00000063366 1 1 1 60 14 2792141 2792161 CCTTAAACTCAGAGATCCACC 58 2792183 2792201 AGCACATGCCTTTAATCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063672.1 ENSRNOG00000048410 ENSRNOT00000070791 2 1 1 63 6 41026077 41026095 AGAATGACACTCCAGGTGG 59 41026032 41026050 CACCTCTGACTCACTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055386 ENSRNOT00000079619 1 1 1 60 1 188542963 188542981 CTTGATTGGCAAAGCTGTC 58 188543005 188543023 CACTCCTGGTACAAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061261.1 ENSRNOG00000053836 ENSRNOT00000084897 2 1 1 60 4 113101363 113101381 GAACTTCACCTACGCAGTC 58 113101402 113101423 GTGAAACTTGCAATAGAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022023.1 ENSRNOG00000046240 ENSRNOT00000074553 1 1 1 88 13 103376379 103376397 GAGGATCAGACGGAAGCTC 60 103376304 103376329 CTCTTAAGTCGGAGTTCTTGC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059438 ENSRNOT00000087823 2 1 1 60 1 84992329 84992349 TAAAGGGTTCAACCTCTCCTC 59 84992289 84992309 TAACTTTCCTCTTCCACGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034513 ENSRNOT00000052636 1 1 1 60 14 59994530 59994551 ATGTACCAGATCTCATTTGACC 58 59994572 59994590 TGAGAGTACTAACCAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034513 ENSRNOT00000052636 3 1 1 60 14 59994533 59994555 TACCAGATCTCATTTGACCTCAG 60 59994572 59994593 CTATGAGAGTACTAACCAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118802.1 ENSRNOG00000057672 ENSRNOT00000089658 2 1 1 80 13 113764014 113764033 ATTTGTCCTCTGCTTTGGTG 59 113764075 113764096 GGAGCCAAGAATTATTGCCG 60 Novel Rattus norvegicus 81 SNORD101 ENSRNOG00000057952 ENSRNOT00000083652 1 1 1 60 1 22758921 22758942 GAGTGATGACTTGTATTGTCGG 59 22758963 22758981 ACTAGCTGAATCTCACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012012.1 ENSRNOG00000053134 ENSRNOT00000075009 2 1 1 84 2 182113783 182113801 TTCCAGCTCTTTAGGCAGG 59 182113713 182113735 TCTGGCTTAGTGAAGAGGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051626 ENSRNOT00000080980 2 1 1 60 4 31165147 31165169 GGAACGATACAGAGAAGATTAGC 59 31165189 31165207 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060547 ENSRNOT00000091843 3 1 1 60 14 2163620 2163642 GATACAGAGAAGATTAGCATGGC 59 2163582 2163600 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049228.1 ENSRNOG00000056007 ENSRNOT00000090548 1 1 1 60 5 110978609 110978628 TTAGGAAGTCTCGTCTGCTC 59 110978568 110978586 ACAGTTACCACAACACTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053632 ENSRNOT00000084607 1 1 1 60 4 166663701 166663719 ATGGACACTTTGAACGCAC 59 166663659 166663677 CTCCCAGAAAGGTGTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126292.3 ENSRNOG00000056532 ENSRNOT00000079236 1 1 1 60 5 135628606 135628625 GAACATTGTAGAAGCCGCTG 60 135628565 135628584 ATAAGTGTCAAAGACGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052443 ENSRNOT00000086181 2 1 1 60 1 252595055 252595076 GGTACAGTGAAGATTAGCATGG 59 252595097 252595115 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm5d ENSRNOG00000060496 ENSRNOT00000086056 3 1 1 80 Y 573854 573873 ATGTCTTACTGAAGCAGAGG 57 573915 582326 TGTGGTGTTTCTAACCTGTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000056403 ENSRNOT00000085602 2 1 1 60 5 111649890 111649912 TACAGAGAAGATTAGCCTGATCC 59 111649852 111649873 ACGAAATGCTTCATGAAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097183.1 ENSRNOG00000036856 ENSRNOT00000055314 2 1 1 86 5 173565632 173565650 CCTACCACCAGAACAGCTC 60 173565702 173565720 CACTGAGCCAGGAGTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000059634 ENSRNOT00000088166 1 1 1 60 1 220109294 220109312 CAAACGTGGGAAACTTGAC 58 220109252 220109270 GGGAGAGTGTGAATGTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.1 ENSRNOG00000060553 ENSRNOT00000083719 1 1 1 61 Y 1590138 1590156 AAGAAGTTAGACCGCAGGG 59 1590093 1590113 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051673 ENSRNOT00000084695 1 1 1 60 2 224165162 224165183 GTCTCATGTATGTCAGTAGGTG 58 224165123 224165146 CACCAAACATAGACATATCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060080 ENSRNOT00000085065 1 1 1 60 14 20067088 20067106 ATGGCTGATCTAACTGGCT 59 20067046 20067066 CATTTACATGGAGTGTTGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054759 ENSRNOT00000086068 3 1 1 60 1 121575472 121575493 CAACAGAAAGTCAAGAACAGGA 59 121575513 121575532 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052833 ENSRNOT00000080000 3 1 1 61 2 44546573 44546593 GAAACTTCTGGTTGTGTTCTG 58 44546532 44546553 CGTGGAACAGGTTTATTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 2 2 5 97 2 123761678 123762138 CATTACAAGATGCCAACGTG 58 123762198 123762216 CATGATGAGCTCAGCATCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061535 ENSRNOT00000089253 1 1 1 60 2 176306155 176306176 GACTATCTTCCCAGAATACAGG 58 176306116 176306135 GACGCAGCAACTCATATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045263 ENSRNOT00000070530 2 1 1 60 12 26725708 26725729 CTAGCACATTTGATCCCATCTG 59 26725750 26725768 AGTGCTAACCAGGTTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053682 ENSRNOT00000081479 3 1 1 72 14 57833355 57833373 ATAGCTGGTTTCACCAGGG 59 57833409 57833427 CCTTGAGGGAAATCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055772 ENSRNOT00000077418 1 1 1 62 2 54392851 54392870 TGTGTCAATAGGTGACAGAG 57 54392894 54392913 CAGATGCTCAAAGAACACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000043128 ENSRNOT00000040476 1 1 1 80 X 105501530 105501551 ATAACAATGTCATGGCTAAGGC 59 105501592 105501652 CATTGTCCTTAGCCACAGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060015 ENSRNOT00000091083 1 1 1 60 1 207372747 207372768 TCACATGTGAGTCAGTAGTAGC 60 207372708 207372728 GTCAGAGCACTGATTACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057154 ENSRNOT00000079164 1 1 1 60 1 251643638 251643658 CTAGAACCAACAAACAAGCTC 58 251643598 251643618 GTATTCCTCTCCCATTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032265.1 ENSRNOG00000059754 ENSRNOT00000088527 1 1 1 91 18 58097188 58097207 TTGGTCAAGGAAATCAACCC 58 58096361 58097134 TGAGCCTAGAGCTTGTCAG 59 Novel Rattus norvegicus 81 SNORA66 ENSRNOG00000061409 ENSRNOT00000085510 1 1 1 60 14 2863671 2863691 CAAACTCGATCACTAGCTCTG 59 2863631 2863649 CTCTAGCAAACCTGGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052335 ENSRNOT00000084364 3 1 1 60 14 104349654 104349674 ACGAAGTAGAGAAGGTTAGCA 59 104349614 104349633 GAACGCATCAGGAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060445 ENSRNOT00000086699 1 1 1 66 6 75620197 75620215 TTATCCATTGCACTCCGGA 59 75620149 75620167 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059301 ENSRNOT00000086989 1 1 1 60 6 137104992 137105010 TGCACTCAGTTGAAGAGGA 59 137104950 137104969 TGTCCTTGGCCTAAGAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061433 ENSRNOT00000079463 3 1 1 64 6 133753221 133753240 CCAGTGATGAGAATTCTGGG 58 133753267 133753285 GGACCTCAGAGTTACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045043 ENSRNOT00000070310 1 1 1 63 10 89437342 89437360 TGGAAGTTACGCAGGATGG 60 89437387 89437405 TATGACATTGGTGCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111734.2 ENSRNOG00000059725 ENSRNOT00000085688 1 1 1 60 13 89243343 89243364 CAAACAAACAGAAATGCTTCCC 59 89243385 89243403 TCCGTAGTAACATCAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045650 ENSRNOT00000052983 3 1 1 60 3 159426745 159426766 CCCAATCTCATCTGATCTTGGA 60 159426787 159426805 TCCCAGCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0056.5 ENSRNOG00000052122 ENSRNOT00000090050 3 1 1 60 20 3403500 3403518 TGAAAGCAGTATGTGAGGG 57 3403458 3403477 CTTGTGTCTCGCTCTTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052529 ENSRNOT00000085507 2 1 1 60 1 98742927 98742949 GATACAGAGAAGATTAGCATGGC 59 98742889 98742910 GATTGCTTCATGAATTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056494 ENSRNOT00000080284 1 1 1 60 1 249539925 249539944 GAGGCGATGTTTATGTTCAG 57 249539965 249539985 GGCTGCTAATGAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017763.2 ENSRNOG00000060389 ENSRNOT00000078887 1 1 1 96 15 30735962 30736172 GTTTAATTGGGTGAGCAGC 57 30736231 30736250 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AABR07051253.1 ENSRNOG00000056675 ENSRNOT00000090568 1 1 1 80 3 4139249 4140191 GGCAAATACACAGCCTATAGTG 59 4139190 4139214 ATAGTAGAAGATATAGTGGTCCTCC 59 Novel Rattus norvegicus 81 AABR07035641.2 ENSRNOG00000059625 ENSRNOT00000090081 2 1 1 81 12 20669030 20671354 TTACACATGCTCTCAGTACTACC 60 20671395 20671413 CTTATGTCCTCCAGGCCAG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054690 ENSRNOT00000079238 2 1 1 60 12 7353863 7353881 CCTGTAGTCCCAGCTACTC 59 7353821 7353841 CAGAACTCCTGGACTCAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041857 ENSRNOT00000063610 3 1 1 60 12 45113854 45113874 TCTCCTCTGATCTGAGAAGCT 60 45113814 45113834 CGGTCTCCCATCTAAGTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000055445 ENSRNOT00000081564 1 1 1 60 12 44894772 44894790 AAACCAGTCAGTGGAAGAG 57 44894814 44894832 AGATCCCATGGCTATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686683 ENSRNOG00000049888 ENSRNOT00000075650 3 1 1 60 3 76186873 76186894 GAATTAACCCTAAACTGCACAC 58 76186834 76186852 TCCACAAAGGAAAGGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000052127 ENSRNOT00000087035 2 1 1 60 1 88419092 88419110 TCACTGCCTGTTCTACCAC 59 88419050 88419069 ACGGATGACAGTTTCTATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0737.3 ENSRNOG00000053007 ENSRNOT00000091351 2 1 1 90 9 73682950 73686350 ATATCATGGAGCTCAGGAGG 59 73682879 73682899 ACACTGTCCTTCATATCAGTG 58 Novel Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 3 1 1 72 7 34484784 34484802 TGAATGGAAGGCATAGCGT 60 34484838 34484858 TAAGGAGGATGAGCACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055907 ENSRNOT00000091902 3 1 1 60 3 20431051 20431072 CAATACAGAGAACTAGCATGGC 59 20431012 20431034 GGAATGCTTCATGAGTCTATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057237 ENSRNOT00000089773 2 1 1 60 2 137252556 137252576 TACTGACCCTGAGATTTCCAC 59 137252516 137252538 ACCCTACTACCACAAACTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053193 ENSRNOT00000089670 3 1 1 60 1 246946958 246946978 TACAGAGAAGATTAGCATGGC 58 246946918 246946938 ATGGAAGCTTCACGAATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071898.1 ENSRNOG00000056095 ENSRNOT00000090687 3 1 1 168 1 89551356 89551379 ACTAAGTCTCCACTTCTTACCC 59 89551209 89551227 TCCACTGCAGAACTGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061783 ENSRNOT00000090741 1 1 1 60 2 61359584 61359602 GTGTCAGTAGGTGGCAGAG 60 61359542 61359561 TTCATAGGTCAGAACACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017870.2 ENSRNOG00000054808 ENSRNOT00000084376 2 1 1 83 15 32060794 32060985 GATTTGCTGGGTGAGAGGA 59 32061031 32061050 CATCTCAGAGCAGGATTGGT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059972 ENSRNOT00000086139 1 1 1 60 6 52789508 52789527 GTCAAACATGCCTCACTAGG 59 52789467 52789489 CAGAACACTGAGCATAGAAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054271 ENSRNOT00000084997 3 1 1 61 2 198503323 198503342 CGACACAGAGAAGATTAGCA 58 198503366 198503384 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073367.1 ENSRNOG00000059923 ENSRNOT00000072278 3 1 1 68 8 19213169 19213187 CTCACTTGGCAGTTGTCTG 59 19213117 19213138 GGGAAACAGTAATTGAAGAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070559.1 ENSRNOG00000054463 ENSRNOT00000081474 2 1 1 80 8 74982497 74982521 CCTCTTTCTGTTGACTTTACCTG 59 74982561 74982579 ACAACCAATGTTTGCACCA 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060515 ENSRNOT00000089367 1 1 1 60 9 66441663 66441681 TGATCTGACTGGCTAGGTG 59 66441702 66441723 GGGAGGGATATACATGAAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043884 ENSRNOT00000069151 1 1 1 60 9 15728143 15728163 CACCTGATCTTGTCTCATCTC 58 15728103 15728121 CCATCCAAGGACTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043884 ENSRNOT00000069151 2 1 1 60 9 15728143 15728163 CACCTGATCTTGTCTCATCTC 58 15728103 15728122 CCATCCAAGGACTAACCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048308.1 ENSRNOG00000031590 ENSRNOT00000008002 3 1 1 97 5 71867620 71867639 ATGACAACTTTGGCATCGTG 60 71867540 71867560 ATCACGCCACAGCTTAGAG 60 Novel Rattus norvegicus 81 AABR07065531.2 ENSRNOG00000047180 ENSRNOT00000074902 2 1 1 63 6 133709575 133709593 GTGCTAATTGTGGCTGAGC 60 133709619 133709638 TATCACCAGGAGATCATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009919.1 ENSRNOG00000049341 ENSRNOT00000071473 1 1 1 61 2 116993013 116993031 TTTGTAGACCAGGCTGGAC 59 116993056 116993074 CAGCTCTTCAGAGGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047212.1 ENSRNOG00000060477 ENSRNOT00000090963 3 1 1 64 5 24145767 24145787 ATGGACTAGAAATCCATTGGG 58 24145813 24145831 TTCTCTTACCGTAGTCGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000060430 ENSRNOT00000086005 3 1 1 60 4 77463098 77463120 CAGTCAGTTACAGATTGAACTCC 59 77463060 77463080 TCAAGTGCAGTAGTGAGAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000042445 ENSRNOT00000035001 3 1 1 81 10 104438131 104438478 CTTCAAGGCTCTGATGCAG 59 104438522 104438541 CAGCAACTCATAGAGCAGAG 58 Novel Rattus norvegicus 81 AC098563.1 ENSRNOG00000051917 ENSRNOT00000085652 1 1 1 80 1 215828337 215828361 CCCTCCATCTTGTTTCTTCC 58 215828276 215828295 GGAAGTCTTCACAGGATGAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000056056 ENSRNOT00000079716 2 1 1 61 14 52980939 52980958 AGAGATTATTAGCATGGCCC 57 52980897 52980915 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061536 ENSRNOT00000089967 3 1 1 60 5 150529815 150529833 CACAACGTTGGAGATGGAG 59 150529773 150529793 TGAGAAGTCGTAGGAATATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060855 ENSRNOT00000086295 3 1 1 60 5 133028766 133028785 GCACTACCATGCTAGAACCT 60 133028803 133028826 CTACTCTACATTCCTACAATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015555.1 ENSRNOG00000045758 ENSRNOT00000072473 1 1 1 106 14 63295543 63295561 GACAGAGAAGGAGGGAAGG 59 63295455 63295473 AATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000045960 ENSRNOT00000071366 3 1 1 60 18 29960777 29960798 AATGACAACGAACCTACTTTCC 59 29960819 29960837 CAGTGTTCTCTAACAGCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059067.1 ENSRNOG00000055910 ENSRNOT00000083917 2 1 1 93 4 2972629 2972650 CTTCTTCTGACTCACTTGGC 59 2972706 2972724 AAGATGGTCCAGGGAACAC 59 Novel Rattus norvegicus 81 AABR07012313.1 ENSRNOG00000009445 ENSRNOT00000012507 1 1 1 132 2 192953057 192953075 TCTGGATGCTGTAGCAGTG 60 192953172 192953190 CTTCCTCACTGAGGTCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000076115 3 1 2 91 X 73425475 73426375 GTGCCTGAAGACATTGGTC 59 73426430 73426448 CTACTACAGCAACAGTGGC 58 Novel Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 1 1 1 60 1 92088255 92088276 GTGTGGTTGTCATCACTCTC 59 92088214 92088232 CAGTGGTCGGTATCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058074 ENSRNOT00000089453 1 1 1 60 6 61280754 61280773 GAGGCTGTGTCTACACTCAG 60 61280713 61280734 TCAGGAGTGTGAGATCAATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015320.1 ENSRNOG00000058176 ENSRNOT00000083767 1 1 1 104 14 51960287 51960307 AGAGGCTTTCTCTACCAAGAG 59 51960373 51960418 TAACCTACCGCCTGTTTCC 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000053822 ENSRNOT00000091174 2 1 1 60 7 80088010 80088028 CCGCTACAGATTGAACTCC 58 80087968 80087988 TTAGTCATGTGCAGAAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056284 ENSRNOT00000086655 2 1 1 60 6 74187154 74187176 GGAACGATACAGAGAAGATTAGC 59 74187196 74187214 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061072.1 ENSRNOG00000056179 ENSRNOT00000084036 3 1 1 82 4 103568774 103569122 GGATTCCAGTTTCCAGAAGTG 59 103568712 103568734 TATAGAAGCCTGATCTCCAAGTG 60 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000054998 ENSRNOT00000080569 2 1 1 60 5 159232882 159232901 AATTTACACAGCCAGACACC 59 159232920 159232942 CAGCATATCGGTCATCTTAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019386.1 ENSRNOG00000052579 ENSRNOT00000090448 1 1 1 65 15 103440980 103440998 CATGAACGCCTTCATGGTG 60 103440933 103440951 ATCTTAGGGTTCTCCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044824.1 ENSRNOG00000057124 ENSRNOT00000082888 2 1 1 80 20 22420994 22421014 CAATGGCAGGGATGAAATGAG 60 22420931 22420954 GATAAACTGTATGCCCTCCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052213 ENSRNOT00000078295 2 1 1 60 6 56740887 56740905 TTGTGGGTAGGCTACTGTG 59 56740927 56740947 CTTTGTTTCTCTTCTCTTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 3 1 1 65 8 45701549 45701569 TTTAGTGCTATCTTCATGGCC 58 45701502 45701522 TACTCTCACACCAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0032.5 ENSRNOG00000058784 ENSRNOT00000087909 1 1 1 83 20 3171852 3199250 ATTCTTAGCAGGTGGTGGG 59 3171787 3171805 CATTGTCCAGGAGTTGCTG 59 Novel Rattus norvegicus 81 AABR07065445.1 ENSRNOG00000057803 ENSRNOT00000085943 2 1 1 80 6 128985574 128987919 TCAAGGAGAAGGCAGAACC 59 128985512 128985530 TCCGGTATTTCCCTATGGC 59 Novel Rattus norvegicus 81 AABR07021736.1 ENSRNOG00000034300 ENSRNOT00000048823 3 1 1 60 13 88782107 88782125 TGTGGGTTCACATTGTTGG 59 88782146 88782167 AACTTATAGGCAGTAGCAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134009.1 ENSRNOG00000053038 ENSRNOT00000090744 1 1 1 72 19 55510478 55510498 AAGAACAGGAGGACGTGTG 60 55510534 55510554 CTGGCTGCAGTGACTAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000054211 ENSRNOT00000079512 3 1 1 60 4 63589457 63589476 GTGTGCATCATTGGTGACAG 60 63589498 63589517 ATAGGGCATAACACTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141344.2 ENSRNOG00000060478 ENSRNOT00000085003 1 1 1 60 5 154438148 154438170 CAAGTTTATCAAGAAGAGGGTGG 60 154438110 154438128 CAGCTCCTCCCTCTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059394 ENSRNOT00000089300 1 1 1 60 14 46687018 46687036 GATGAAGAACGCAGCTAGC 59 46687059 46687078 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057388 ENSRNOT00000082147 1 1 1 60 14 14198198 14198217 TTTGCACAGTAGCAGTATCG 58 14198157 14198178 CAATTAGCAATAATCGTGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053982 ENSRNOT00000090805 2 1 1 60 10 65358154 65358172 AAGATAGCGTGACTATGGC 57 65358194 65358214 CTCCAATGTTAGGATCAATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059596 ENSRNOT00000082282 2 1 1 60 7 97676473 97676491 TGAGTGCCAGGTTCAAGAG 60 97676431 97676451 CCTTGGCTGAAGATTAGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 3 1 1 62 4 103403550 103403569 AGCCTGAAGATATTGCAACC 58 103403091 103403528 TTATCACTGTGGGAGGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055703 ENSRNOT00000083760 1 1 1 61 4 14815826 14815844 TCACATGTGCGTCAGTAGG 60 14815783 14815803 GCCAGAACACTGAGTTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054252 ENSRNOT00000084629 1 1 1 60 5 113399659 113399678 TCAGAACAAGGTCTCAAAGG 58 113399618 113399639 TACTGTGCTATCTTACATGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052410 ENSRNOT00000087205 2 1 1 60 5 72315304 72315322 GCATTAGTAGGCTGCAGAG 58 72315262 72315283 TTCTTAAGTCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051783 ENSRNOT00000091219 1 1 1 60 3 147326081 147326099 GCCTAAGGCTAACGAAGCT 60 147326123 147326141 CTTTGAGAGGGAGGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052337 ENSRNOT00000088717 3 1 1 60 20 27309015 27309034 AGCTACATGCCTATTTGGTC 58 27308974 27308994 TTTATCGAAGATCCACCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060944 ENSRNOT00000086973 1 1 1 60 10 28889714 28889733 AGAAGAGTAACTGCACTGGA 58 28889753 28889774 ACACTGGACATTAAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057424 ENSRNOT00000080955 3 1 1 83 7 70150280 70150298 TACAGGCAGTACAGGTGTG 59 70150215 70150234 AACACTGAGCATAGACGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055013 ENSRNOT00000091695 3 1 1 60 13 47876686 47876705 AAGTAGTGCTTTCTTGCCAG 59 47876645 47876665 ACATATTCCCATGTGTCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000055493 ENSRNOT00000083232 2 1 1 60 5 148502391 148502409 AAGTAAATTCCCAGAGGCG 58 148502349 148502367 GGTTCACACCTGTTACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059658 ENSRNOT00000087335 1 1 1 60 20 23530598 23530616 TAGGTGTTGGAGAGGAGAG 57 23530556 23530574 TCAGATGTTCCCAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054015 ENSRNOT00000078245 2 1 1 60 10 49170484 49170506 GGAACGATACAGAGAAGATTAGC 59 49170446 49170464 GCTTCACGAATTTCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054233 ENSRNOT00000086376 1 1 1 60 19 44299874 44299893 ACAATGCAGGGAAGATTAGC 58 44299916 44299934 ACACCTCACAAATTTCCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060121 ENSRNOT00000078069 1 1 1 60 7 143974996 143975015 TGGAACAACACAGAGATCCA 59 143975032 143975056 CACTTCATGTACTTGTGTATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060121 ENSRNOT00000078069 3 1 1 60 7 143975001 143975019 CAACACAGAGATCCAGGCA 60 143975040 143975061 TGGAACACTTCATGTACTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052805 ENSRNOT00000086601 2 1 1 60 13 100177990 100178009 AATCTGTCATCCCATTGGTC 58 100178031 100178050 AACATCTGCTTATCCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018010.1 ENSRNOG00000061809 ENSRNOT00000075218 3 1 1 175 15 36196172 36196192 AACTTGCAGCCTCTAATACCT 59 36196014 36196035 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056568 ENSRNOT00000088541 1 1 1 60 X 116101846 116101865 CTGCTACACCATTGATTGCT 59 116101886 116101906 GGAACAAACTTCAACCAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056568 ENSRNOT00000088541 3 1 1 60 X 116101888 116101908 CTTGGTTGAAGTTTGTTCCCT 59 116101930 116101948 AGCAGGAGGTAAGTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042302.1 ENSRNOG00000057365 ENSRNOT00000091082 3 1 1 60 X 152224782 152224802 AACTGTTTGCAGAGGAAACTG 59 152224742 152224762 ACTTCTTTGCGATGAGAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000056434 ENSRNOT00000088952 3 1 1 60 13 60569738 60569758 TGCATGTGGAAATACCTTCTC 58 60569777 60569798 TAGCATGTTCTGGATACATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097890.3 ENSRNOG00000059818 ENSRNOT00000085800 1 1 1 69 18 51300151 51300170 TGAGATCCATCTGTAAGGCA 58 51300101 51300119 TGTTACCTCCCACAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056929 ENSRNOT00000083179 1 1 1 60 15 33489593 33489611 GAGAAGATTAGCATGGCCC 58 33489551 33489569 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051643 ENSRNOT00000078952 3 1 1 60 5 29570742 29570762 TTGTTTCAGTAGTTGGCAGAG 59 29570702 29570723 TTATAGGTCAGAACACCAAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055704 ENSRNOT00000085093 3 1 1 60 5 16731930 16731950 AGAGACTATGTCCATGCTGTG 60 16731890 16731908 GATGGTTGTCTGTCTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057937 ENSRNOT00000086070 3 1 1 62 19 56242974 56242995 CAGATCGTATAAATCTTTCGCC 58 56242933 56242953 AGACTCACAGTTGTTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056288 ENSRNOT00000092025 3 1 1 62 13 58388654 58388674 GCTATCTCAATTGATTGCTCG 58 58388695 58388716 GTGTGGAAAGTATAGAACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054117 ENSRNOT00000088690 1 1 1 60 5 36591888 36591907 CATGAGCCTCTGTAGATGAC 58 36591929 36591948 AAAGGTCAGAACACAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049201 ENSRNOT00000075520 1 1 1 60 13 34620815 34620833 TTCTGCAGCTATACCACCC 59 34620773 34620794 CCTCAATTAACTTCTGAGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054981 ENSRNOT00000081481 1 1 1 60 19 35661437 35661456 TGCATCAGTAGGTGACAGAG 59 35661478 35661497 TCACAGGTCAGAACATTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055067 ENSRNOT00000072497 1 1 1 60 19 56338809 56338827 CCCGATCTCGTCTGATCTC 59 56338767 56338786 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053782 ENSRNOT00000088817 1 1 1 60 5 106424819 106424839 GGAATACATGCTTGACATGCT 59 106424861 106424879 GTGTTTGCCTATCTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059639 ENSRNOT00000087755 3 1 1 60 4 40051849 40051868 TAGAATCTCCAACTGCATGC 58 40051808 40051826 ACTGTGATAACCTGGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056340 ENSRNOT00000084479 1 1 1 66 7 83264179 83264201 GGTAGGTGTGACTTCTATATCAC 58 83264226 83264245 ACTGGTAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058091.1 ENSRNOG00000048680 ENSRNOT00000074578 2 1 1 62 7 99735413 99735435 CAGTACAGTATAGCACAGTACAG 58 99735453 99735475 CTGTGCTGTACTATACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054175 ENSRNOT00000088741 3 1 1 80 X 119599651 119599669 GCTCACTTCAGCAGTACAC 59 119599712 119599731 TAACATGTCATCCTTGCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037054.1 ENSRNOG00000003789 ENSRNOT00000005028 2 1 1 65 X 10932264 10932286 GTCAAGGGATGTAACTGAAAGAG 59 10932220 10932243 GGCTTATCCTCATACATCTTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 3 1 1 65 13 52266800 52266819 GACCAGATGCCAAGATGGA 60 52266753 52266775 CAATGTCCTCTATTGTCATCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056319 ENSRNOT00000091286 1 1 1 60 15 108823640 108823658 GCACATATGCTGACATTGG 57 108823598 108823616 ATGCCATCTTTGCAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.5 ENSRNOG00000057857 ENSRNOT00000078174 2 1 1 73 15 32012570 32012588 TTACTCCTAGGCCTTCACC 58 32012762 32012780 ATTTGTTTGACCTGCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053440 ENSRNOT00000084604 2 1 1 60 X 96953046 96953068 TGTTAGTAGGAGGTAGAGAAGAG 58 96953008 96953026 GTCAGGACATCAGTGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053713.1 ENSRNOG00000056903 ENSRNOT00000089018 1 1 1 80 3 121884825 121884843 TGTTGGAGGTGTGGTATCG 59 121884887 121884906 TTGCCAACTTCCTCTTGCT 60 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054382 ENSRNOT00000090906 1 1 1 83 X 49814544 49814562 AAGAGTGGCTTCTGGAGTG 59 49814607 49814627 TTCCATTTCTTTCCTAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059289 ENSRNOT00000084347 3 1 1 81 18 34418237 34418256 ACCAATGAGGTTTGACTGTG 58 34418297 34418318 GCAGTTACTCTGCTAATGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054947 ENSRNOT00000079612 1 1 1 74 3 150991172 150991190 TTATCCATTGCACTCCGGA 59 150991116 150991134 CCACAAATTATGCAGTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054947 ENSRNOT00000079612 2 1 1 74 3 150991172 150991190 TTATCCATTGCACTCCGGA 59 150991116 150991135 CCACAAATTATGCAGTCGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056990 ENSRNOT00000083599 1 1 1 60 1 157687826 157687845 TGTTCCTCTTAAACGCTGTG 59 157687785 157687803 TAGGCTGCATATACTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060289 ENSRNOT00000090777 3 1 1 60 X 23467627 23467645 AACCTCCAAACAAGCTCTC 58 23467585 23467604 CTTGGAAGCTTGACTACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060957 ENSRNOT00000084449 2 1 1 61 5 27757686 27757704 GTCACGTCTGAGCAAAGTG 59 27757725 27757747 AGTCAGATGTTCATAGGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091,ENSRNOT00000076399 3 2 2 95 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31264932 31265826 TCATCATACACCTTGCCAC 58 Novel InUTR Rattus norvegicus 81 U6 ENSRNOG00000055262 ENSRNOT00000080640 2 1 1 62 7 60550066 60550085 GATACAGAGATAGCAAGCCC 58 60550023 60550042 AATATGGAACGTTTCACGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026842.1 ENSRNOG00000031349 ENSRNOT00000047795 1 1 1 60 17 2920949 2920969 ATTGAGCAGAGACAAAGACAG 58 2920989 2921009 GACATCTGAATGGCTCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060257 ENSRNOT00000085753 2 1 1 61 7 58377023 58377041 AGAGACTTTGACAGCCCAG 59 58376980 58377000 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058936 ENSRNOT00000091254 2 1 1 60 18 65612043 65612064 GTCAGTTACAGATTGAAGTCCT 58 65612004 65612024 TTTGTCAAGTGCAGTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058384 ENSRNOT00000084759 3 1 1 60 18 14119286 14119304 GTGCATTAGAAGGTGGCAG 59 14119327 14119346 ACAGGTCAGAACTCTTAAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000087321 3 1 2 80 20 3952241 3952259 CTACACTCCTCTCCCTGGA 59 3952566 3952585 GTCTGGATCTCCTTCTCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000079111 1 1 2 60 20 3952353 3952374 ACGATAAGCAGCTTATAACCTG 59 3952392 3952413 ATGACTAAGACAAAGAAGCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000051492 ENSRNOT00000083318 1 1 1 60 18 28355444 28355462 CAGGCAGTGTATTGCATCC 59 28355485 28355504 CTAGACTAGGACCAACTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060772 ENSRNOT00000080196 3 1 1 60 4 116931050 116931070 GAAGCTATGTCCAAGCTAAGC 59 116931089 116931110 TGTTAGGCTACTGATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054101 ENSRNOT00000081044 2 1 1 60 10 76628768 76628787 CCATGGTTGATTCTGTTCCC 59 76628727 76628746 TGACCTTTGGGAAGAATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061451 ENSRNOT00000088820 1 1 1 60 X 80236745 80236764 GACCCTTTGTCCTTCATCAC 59 80236704 80236723 CCTTGTTGACCAGTCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006871.1 ENSRNOG00000053536 ENSRNOT00000082839 2 1 1 134 1 261464196 261464337 AAATCTGCGAGAGGAGACC 59 261464435 261464453 GATTATAGCGGATGCCGTC 58 Novel Rattus norvegicus 81 AC098462.2 ENSRNOG00000055843 ENSRNOT00000090337 2 1 1 86 1 63290167 63290188 TCTTGATGAGACTCAGAAGCTC 60 63288221 63290120 GTTCTATGCCCACAACCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054707 ENSRNOT00000084599 2 1 1 73 15 480038 480056 CCTTCAGCAGCACATACAC 59 479983 480002 TATGTCATCCTTGTGCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 3 1 1 81 18 25313946 25313964 TTACTGCAGAACACTGGGT 59 25313879 25313901 CAATGAGTCCCTGGGAGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051961 ENSRNOT00000090690 2 1 1 60 4 165500323 165500345 GAGGAGAAAGGCTATTTCTACAC 59 165500285 165500309 CTATTAATCATTCAGATGGTCGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000051393 ENSRNOT00000080558 3 1 1 77 7 141587032 141587051 CCTGAGTCCTCATAACTGGT 59 141586974 141586993 CATTTACTCAGGCGTTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053993 ENSRNOT00000089089 2 1 1 60 15 61654804 61654827 GGCTAAGATCAAGTGTAGTATCTG 59 61654846 61654864 AAAGAGACTCGGCTTTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054304 ENSRNOT00000088368 1 1 1 60 6 94133692 94133710 GAGAAGATTAGCATGGCCC 58 94133650 94133668 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059899 ENSRNOT00000080326 2 1 1 60 10 94963818 94963839 GGTGGTGTATGTCTTTAATCCT 58 94963860 94963878 CTGGCTTACAGCTCTACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000054970 ENSRNOT00000091849 3 1 1 60 6 23449457 23449476 TGTGATGATATCCACACGGT 59 23449416 23449437 CAAGAGAAAGGTGTCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 1 1 1 81 10 28192462 28192480 CCACTCCCTGTTAGATCCC 59 28192524 28192549 TCAAACTGATGGAAATGCTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052476 ENSRNOT00000089337 2 1 1 67 5 99476610 99476629 ATAGGTGTGGCTACTCTGTC 59 99476562 99476580 ACAGTAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055101 ENSRNOT00000084346 3 1 1 61 15 66479584 66479602 CAGATGTGGATGCTGTGTC 59 66479625 66479645 AGAAATAACCCGTTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 3 1 1 77 1 234836119 234836140 ATCATTGACTCAACTGTCGA 57 234836061 234836081 CATTGAGTCCTGGATTTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC117101.2 ENSRNOG00000050502 ENSRNOT00000073382 3 1 1 61 15 28869989 28870008 CCTTGAACTCAGAGATCCAC 58 28870032 28870050 TTGGCCATGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057206 ENSRNOT00000077209 1 1 1 60 5 93420358 93420380 GGATGATACAGAGATTAACACGG 59 93420398 93420418 AAGGCTTCTCAAATTTGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0647.2 ENSRNOG00000051221 ENSRNOT00000076201 3 1 1 80 8 64852296 64852317 CACTATGAGTACGTGATCATGG 59 64844479 64852255 ATTGAAAGGTTCTCCCGGT 59 Novel Rattus norvegicus 81 LOC685321 ENSRNOG00000058976 ENSRNOT00000091891 3 1 1 102 10 14668351 14668553 CATGGCCTCTGTATCTGTC 57 14668619 14668637 GTAGATTCTCAGGCTGACC 57 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000051403 ENSRNOT00000079856 2 1 1 65 15 36916639 36916657 CAAGTTCTGCTGCTCATGG 59 36916592 36916610 TCTGCAGCCAAACTTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053454 ENSRNOT00000087446 3 1 1 60 4 11286538 11286556 ACGATCTGGCTGTTACACC 60 11286577 11286598 TACAGATCAGTGATACCAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052656 ENSRNOT00000086581 1 1 1 60 11 24095676 24095696 TCAACTAAAGAGGGTGATCGT 59 24095636 24095658 CTTATTCCCTTGACAGAAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034729.2 ENSRNOG00000048042 ENSRNOT00000073682 2 1 1 80 11 85306366 85306389 GAGATTTCACCTCACATGCG 59 85306305 85306324 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07030425.1 ENSRNOG00000056057 ENSRNOT00000088101 1 1 1 60 10 85130339 85130361 CTCTATGTCAAGCTGCATTACTG 60 85130381 85130399 GATTCCTGACTACCTCGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041762 ENSRNOT00000063515 3 1 1 60 11 37986768 37986787 CTGTATACACCTGGTCTTGC 58 37986727 37986747 AGTACTACCAAGGTCTGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000053002 ENSRNOT00000079533 1 1 1 60 7 49541772 49541793 TACTCAAGATTTCCATGGAGAG 57 49541733 49541751 GTCAAGACAAGGCCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060845 ENSRNOT00000080508 2 1 1 60 7 117480371 117480392 GACACTAACACTGGAATGATGC 60 117480332 117480351 AAGTGTTCTCATTGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060845 ENSRNOT00000080508 3 1 1 60 7 117480371 117480391 ACACTAACACTGGAATGATGC 59 117480331 117480351 TAAGTGTTCTCATTGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055515 ENSRNOT00000078194 1 1 1 60 7 712975 712995 ACTTAGTGGTGGATCACTTGG 60 712935 712954 TAATTCTCCCAGCTAGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057820 ENSRNOT00000081557 2 1 1 75 19 27449900 27449921 TCGCTTCAGAAGTACATATACG 58 27449846 27449864 ATTTGCTGCTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052496 ENSRNOT00000080728 2 1 1 60 18 53015924 53015944 AGCGAATGGTACAGAGAAGAG 60 53015964 53015984 TTACAAATTTGCCTGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007385.1 ENSRNOG00000050701 ENSRNOT00000072289 1 1 1 80 2 11885807 11885825 GTAAAGGCATTTCCCACCC 59 11885868 11885889 AGACAGTACGTAGCAGTCAC 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000057441 ENSRNOT00000082127 3 1 1 64 11 70601615 70601633 TTGAGTTCAGTTCAGGGCA 59 70601569 70601588 CAGCCAATTTCAATGTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059742 ENSRNOT00000080917 3 1 1 60 5 141358962 141358986 GACAATACAGAGAAGACTACATGAG 59 141359003 141359022 AACGCTTCAGATTTGCAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052221 ENSRNOT00000090315 1 1 1 60 5 31308332 31308354 CAGGGATACAGAGAAGATTAGCA 60 31308294 31308313 GTTTCATGCATTTGCATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051701.1 ENSRNOG00000060562 ENSRNOT00000080646 2 1 1 80 3 19559664 19559685 TGACTCTGAGACAATTTCACCT 60 19557949 19559330 TGTTGGAAATGTCATTGCCAG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000054051 ENSRNOT00000085021 2 1 1 60 5 157277871 157277892 GAGATACCATGGTCATGAAGGT 60 157277832 157277856 CAGAGTACAATAATGGATAAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052195 ENSRNOT00000085290 3 1 1 61 5 22316547 22316568 GAAGCAATACAGGGAAGATCAG 59 22316589 22316608 TGCTTCATGAATTTCATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056169 ENSRNOT00000078553 3 1 1 61 11 86786601 86786620 ATACTTATCTGGCGGAGGAG 59 86786559 86786577 ACCTTACCCTTGGGAAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060081 ENSRNOT00000091838 1 1 1 60 4 98821584 98821605 CGGTGGTGTTCTTATATCAGTC 59 98821545 98821566 GGCTAGTGTGAACAAAGAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053542.2 ENSRNOG00000046653 ENSRNOT00000071731 3 1 1 61 3 112786695 112786714 CCTCTTCTTCCTCCTCTTCC 59 112786653 112786671 AAAGGAGGTGGAGGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051981 ENSRNOT00000087149 2 1 1 60 5 80234108 80234132 GACTACAGAGTTCCATATGAATCAG 59 80234147 80234168 GAGCATATACATAACCCGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 2 1 2 61 6 139486817 139486945 AAAGGTGTCCAGTGTGAGG 60 139486970 139486988 CTTCCAGGCTGTACTAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000059360 ENSRNOT00000079652 1 1 1 60 4 25065762 25065781 TCTTCTCTGAATGTGCTGAC 58 25065803 25065822 GTTATGCAGTAGCATTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053958 ENSRNOT00000082219 3 1 1 60 20 17226805 17226824 CACATATCGTCAGTAGGTGG 58 17226764 17226785 CATTAGCACCTTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036453 ENSRNOT00000054564 3 1 1 60 4 153099300 153099319 TCTTGTCTGAGCTCAGAAGC 60 153099342 153099360 CAGTCTCCCATCCAAGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 3 1 1 85 9 110056182 110056205 AGAATAGCTTTGGCTACTCCT 59 110056117 110056135 CTCCAGCAAAGCCAAATCG 60 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051703 ENSRNOT00000077383 2 1 1 60 9 17173730 17173749 CTTGAGTCCAGGAGTTCTGG 60 17173689 17173707 GAACTTAGTGCGAACACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056346.1 ENSRNOG00000036410 ENSRNOT00000054522 1 1 1 60 7 22656950 22656972 CTAATAGAGAAACACTGTCTCGG 59 22656912 22656931 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058124.3 ENSRNOG00000055178 ENSRNOT00000077137 2 1 1 60 7 101138822 101138841 GGGCTACTGAAACTACAAGG 58 101138781 101138801 CTTAATACAGGGCTGTTTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130162.1 ENSRNOG00000034030 ENSRNOT00000049830 1 1 1 80 16 49396365 49396645 CCTTTCTCTTAGGCAACCAC 59 49397320 49397339 AGGGAGTATTTGATCGGGTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054880 ENSRNOT00000081793 3 1 1 60 5 71411868 71411886 CTTACTAAGCAGGTGCCTC 58 71411910 71411928 ACAAGTTCAAGAGGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000058660 ENSRNOT00000086324 1 1 1 114 11 71799603 71799622 CCTTTAGATGTGGCACTAGG 58 71799698 71799717 TGATCCCGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127106.1 ENSRNOG00000061321 ENSRNOT00000089291 2 1 1 65 2 3124296 3124316 GTAACCTCCCTGCTCTGTC 60 3124344 3124363 GAATGACTGTCTGTTCTGCA 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA25 ENSRNOG00000061640 ENSRNOT00000086281 2 1 1 63 4 136623251 136623272 GTTACTTCTTAACACTGTGACC 57 136623209 136623227 TCACAAAGTGCATGGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000059569 ENSRNOT00000081585 2 1 1 71 6 79174001 79174021 GCAAGCCATCTGGTATAACAC 60 79173950 79173971 GGCAAAGGAAACAAGTATTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000051445 ENSRNOT00000079946 2 1 1 60 4 33946895 33946914 GAGAATCTGCTGGTCTTGGT 60 33946937 33946955 GCACTGGTCACTAACAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046699.1 ENSRNOG00000049217 ENSRNOT00000051988 1 1 1 113 5 2177267 2177287 TGGACCAGAGAAACACCTC 59 2177172 2177196 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059651 ENSRNOT00000090556 3 1 1 60 4 139165508 139165527 GAACCTCCAAACAAGCTCTC 59 139165467 139165485 GCTCCAAACCTGTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055944 ENSRNOT00000077615 3 1 1 61 9 45559735 45559753 ACAGGAAGATTAGCATGGC 58 45559692 45559710 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056681 ENSRNOT00000091438 3 1 1 72 6 101253229 101253247 CATTGTAAGTGTGGCTGCT 59 101253282 101253301 CATAGGTCAGAACACCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1362.2 ENSRNOG00000051304 ENSRNOT00000076363 2 1 1 82 1 135135850 135135869 GTAGCTGGTATGCTTCTGTG 59 135135912 135162481 TTCATGTTCTCTTTCCAGACG 58 Novel Rattus norvegicus 81 AABR07052812.1 ENSRNOG00000042248 ENSRNOT00000066227 1 1 1 92 3 76485148 76485166 AAGCTCATGAACCAACCCA 60 76485072 76485094 ATCAATCAGGTTTGGTGTCAC 59 Novel Rattus norvegicus 81 AABR07051733.3 ENSRNOG00000058552 ENSRNOT00000077772 2 1 1 80 3 20419236 20419384 ATACTCTGGCTTACAGGTGG 59 20419175 20419193 AATTTCTTCCGGAGACGCA 60 Novel Rattus norvegicus 81 Rn60_8_0651.1 ENSRNOG00000051285 ENSRNOT00000076238 2 1 1 81 8 65282846 65282864 CAGCATCTGCGATCAACAG 59 65258674 65282801 TGTCTGGACATGCATTGGT 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000057077 ENSRNOT00000080359 2 1 1 60 10 70489633 70489651 AGTTGGAATAGGAGCTTGC 58 70489675 70489693 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000060035 ENSRNOT00000079151 1 1 1 60 11 88049816 88049836 GAGGCAGAATAAACTACCCTG 58 88049858 88049876 CAATACAGACCAGGCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060930 ENSRNOT00000084811 2 1 1 60 11 67350564 67350584 TGGAATGCTACAGAGGTTACC 60 67350603 67350624 CTGTTTCGTGTATGTTTGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063197.1 ENSRNOG00000051746 ENSRNOT00000087358 2 1 1 60 6 21709501 21709520 GAGGATGTGTCTACTTGGGA 59 21709543 21709561 AAAGATGGGCTGATGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043141.1 ENSRNOG00000033819 ENSRNOT00000045060 1 1 1 60 19 23832797 23832818 CAAGAAGCCTAAGAAGTCAACC 59 23832834 23832857 ATCTTCTACTGGATGTGTAAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000051999 ENSRNOT00000082012 1 1 1 60 4 69404002 69404021 TTAACCGCACTGAGAAAGGA 59 69404044 69404062 TCTTGGCTTGGTCTTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033318.1 ENSRNOG00000059691 ENSRNOT00000080073 2 1 1 80 11 17281764 17281787 GAGATTTCACCTCACATGCG 59 17281703 17281722 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076750,ENSRNOT00000085052,ENSRNOT00000088581 1 3 6 80 10 74883735 74883980 GAGAAAGATGAAGAGCTGCG 59 74884023 74884041 AGCCAGTTAGTGAGTCTCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055528 ENSRNOT00000085160 2 1 1 65 4 103047065 103047085 GTCAGTGCTGTATCACATGTG 59 103047020 103047038 ATACTGGGCAGACACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052939 ENSRNOT00000084284 3 1 1 60 4 143430801 143430821 TGATGTAGCTCACTAGACACG 59 143430840 143430861 ATTCAGGAGAAATTCCGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059891.1 ENSRNOG00000060069 ENSRNOT00000089205 1 1 1 60 4 40419726 40419744 GGTTCTCAGTGTTACAGGC 58 40419682 40419701 TGTCCATTTCGCTTTCTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC119496.1 ENSRNOG00000053856 ENSRNOT00000088629 1 1 1 60 17 21644197 21644216 CTTTCTGACTATGTGCAGCC 59 21644238 21644257 GAGGACAGTCTCGTCTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003650.1 ENSRNOG00000054073 ENSRNOT00000072981 2 1 1 82 1 117175454 117175674 CGGGACCACAGAAATAGCA 60 117175720 117175738 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000052752 ENSRNOT00000077645 2 1 1 60 10 7260840 7260860 GATGTGAGATCTTTCTGGTGG 59 7260882 7260900 TGATCAACTCTGGTGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052752 ENSRNOT00000077645 3 1 1 60 10 7260843 7260862 GTGAGATCTTTCTGGTGGAG 58 7260884 7260903 CTGTGATCAACTCTGGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.3 ENSRNOG00000052878 ENSRNOT00000077690 3 1 1 85 9 27556403 27556422 GATCAAAGCACTGGTTGGTG 60 27556469 27556765 ATCCAACATCTCTTGGCCTC 60 Novel Rattus norvegicus 81 AABR07005581.1 ENSRNOG00000057396 ENSRNOT00000084774 1 1 1 80 1 189009461 189009483 AGATTTCACCTCACATGCG 58 189009399 189009418 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000053322 ENSRNOT00000080718 3 1 1 60 9 13654619 13654638 CCTAGGGTGAGACTTATCCA 58 13654578 13654598 CGTTTACAGAAATTGCAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068711.1 ENSRNOG00000048020 ENSRNOT00000054648 1 1 1 60 9 116192195 116192213 CAGGGCTACAATAGGTGTG 58 116192237 116192255 GAGTGAGGCACTCAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065598.1 ENSRNOG00000012677 ENSRNOT00000016905 1 1 1 60 6 136474092 136474111 CAAACCAAGGAACCAGAGAC 59 136474131 136474152 CTTTAGAATCAGTTGCTACAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057100 ENSRNOT00000083242 2 1 1 63 4 183217645 183217665 CAGCTTATTCATGTCACTTGG 57 183217602 183217622 GTTGAGTTTACTACGTTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042789.1 ENSRNOG00000023805 ENSRNOT00000030597 3 1 1 60 19 8943822 8943840 CCTGAAGTGTTACTGCTGC 59 8943780 8943799 CAGTTTCTCAATCAGGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000057120 ENSRNOT00000085369 1 1 1 60 10 55593721 55593740 GAGAACAAGTCTAGCAGAGG 58 55593763 55593781 CCAATCACCAGCTACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000057120 ENSRNOT00000085369 2 1 1 60 10 55593702 55593720 CAGCTTAGGAAGCAGGAGG 60 55593743 55593762 CAAACTGGGAATGGAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047794 ENSRNOT00000074819 1 1 1 60 12 1504039 1504060 GACCAATCTTGTCTGATCTAGG 58 1504000 1504018 CCCATCCACGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057673 ENSRNOT00000081273 3 1 1 60 9 73881255 73881274 GTGTCACAAGTGTATCAGGA 57 73881291 73881315 GAACACTGAGTATAGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680396 ENSRNOG00000026803 ENSRNOT00000017415 1 1 1 201 10 87782524 87782542 CTTGCTGTCAAACCACCTG 59 87782707 87782725 CTGGAGATACAGCACCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058124.2 ENSRNOG00000053535 ENSRNOT00000080206 1 1 1 60 7 101146985 101147006 GGCTTAAATTACAGCTCTACGA 58 101147025 101147045 ACCTCACATTTGGATTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057511.1 ENSRNOG00000059775 ENSRNOT00000080269 3 1 1 62 7 75495544 75495562 CTGGCATTGTTAGCCAACC 60 75495589 75495607 GCAGCAGGATTGTAAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 1 1 1 86 7 13055386 13055406 TTCTTTGGAGGCTCCTCAG 59 13055454 13055474 CCACTCCAAATTGTAAACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 1 1 1 68 2 26870163 26870181 ATGTCTGTACAGCCAGCAG 60 26870017 26870132 ATAGGCCCTTAAGACCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0879.7 ENSRNOG00000051089 ENSRNOT00000075903 3 1 1 80 10 88065638 88065656 AGTTGCATCTTCTCAAGCG 59 88065698 88066087 ATCCGTATTCATATACGCCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055199 ENSRNOT00000085538 1 1 1 60 8 113030347 113030365 CTGCTGTATCACCCATAGG 57 113030305 113030326 TCAGAACACTGATAGTAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009538.1 ENSRNOG00000038752 ENSRNOT00000059203 3 1 1 95 2 102301667 102301685 ATGAATAGGCGATCCACGG 60 102301588 102301610 TGAACCTTGCGGTTTATTGTG 60 Novel Rattus norvegicus 81 AABR07042936.2 ENSRNOG00000057497 ENSRNOT00000079391 1 1 1 80 19 14943243 14945152 GCTCAACAACGTAATGAAGTC 58 14943183 14943203 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000052202 ENSRNOT00000086832 2 1 1 60 8 128107141 128107162 TTCAATGATGACTACAACCTGC 59 128107181 128107201 AGTTGTACTCATCATCCATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041724.1 ENSRNOG00000052130 ENSRNOT00000085536 1 1 1 60 X 137733238 137733256 GAGCAAGGCAGGATTTCAG 59 137733196 137733215 CCTCATTCCTCTTCTCTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052405.1 ENSRNOG00000053222 ENSRNOT00000088405 2 1 1 170 3 51890591 51890612 TCTCTTTGTCTCTGTCTTTCTC 58 51508622 51663637 GATGATGACAGAGACAGACAG 58 Novel Rattus norvegicus 81 AABR07072761.1 ENSRNOG00000030494 ENSRNOT00000042769 3 1 1 60 2 195856804 195856824 GCTCACTTATCACTGGAACTG 59 195856764 195856782 CCTGGATGAGGAGAAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.1 ENSRNOG00000032424 ENSRNOT00000049362 1 1 1 60 7 29909457 29909475 TTATCTGCACTGCCAAGAC 58 29909499 29909517 TTCGCCTTCTCAAAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058641 ENSRNOT00000081270 1 1 1 60 3 25148561 25148579 GGACTTTGGTGTGCAATGG 60 25148600 25148621 ACAATAGGCTACATACGCTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061914 ENSRNOT00000087774 2 1 1 66 13 51327781 51327799 ATCAGACCTTGCTGCTGAG 60 51327829 51327847 CTACATCACTGTGAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051373 ENSRNOT00000088296 3 1 1 60 13 30630836 30630856 AGTAGGTGGCATAGAGAAGAG 59 30630796 30630820 CATATTCCCACAGGTATAATACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690902 ENSRNOG00000057013 ENSRNOT00000087819 2 1 1 61 X 132424706 132424724 GACCGAAAGTGAACGTCTC 59 132424663 132424684 CCTCATTTGATTTCTGAAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052755.1 ENSRNOG00000009648 ENSRNOT00000012787 1 1 1 60 3 73284359 73284380 CATTTCCTACATTGGGTGTCTG 59 73284318 73284338 ATATTCAGTCAAGAGCAGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070238.2 ENSRNOG00000048192 ENSRNOT00000074538 3 1 1 89 8 60701335 60701354 CGGTCGAGATCAAGAAAGGA 60 60701407 60701430 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057741 ENSRNOT00000077660 1 1 1 60 8 71403700 71403719 ACGGAGTAGATAAGGATGGC 59 71403739 71403760 GAGCATTTCATGAATTTGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000060429 ENSRNOT00000026540 3 1 1 80 1 65599943 65600238 GGAGATGGTATCTCCAAGCA 59 65599882 65599900 GATACGGAGGCTGTTTCCT 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041670 ENSRNOT00000063423 1 1 1 60 8 119868191 119868210 CACATCTCCACTGATCTTGG 58 119868150 119868169 CTCTCATCCAAGGTCTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056013.1 ENSRNOG00000009072 ENSRNOT00000044978 1 1 1 60 7 18280168 18280190 ACTGTCTAGTCTATGATGAAGCC 60 18280208 18280228 GCAATCTCTTGTTGAATCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024757.1 ENSRNOG00000050966 ENSRNOT00000072221 1 1 1 80 16 14864550 14864572 AGATTTCACCTCACATGCG 58 14864488 14864507 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055172 ENSRNOT00000088332 1 1 1 60 8 56838025 56838049 GAGGCTATGTTTATACTAAGTGCTC 59 56838064 56838085 TGTTAGGCTACTAACTGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046358 ENSRNOT00000073866 1 1 1 60 8 130370052 130370073 CCTAAATGTGCTTGATTTCCTC 58 130370013 130370033 ATATTTACCAGGCCTGATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052812 ENSRNOT00000078659 3 1 1 61 8 48825744 48825766 CTTTGAAAGATACAGAGTGTCCC 59 48825784 48825805 GGTTAAGTGCTACTCAAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008319.1 ENSRNOG00000056627 ENSRNOT00000080851 1 1 1 84 2 52855840 52871471 TCCAATGGGTTGAGAGCTG 60 52871519 52871537 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AC105645.4 ENSRNOG00000059654 ENSRNOT00000077364 1 1 1 62 8 48802081 48802099 ATAGACTCCCTGGACAGAG 57 48802037 48802055 AAGGCATACTTCGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070207.1 ENSRNOG00000056320 ENSRNOT00000091086 3 1 1 83 8 57861239 57861388 GCTATTGATGTTACCTCTTAAAGGG 60 57861429 57861448 TGTTGGAAAGAGTGTTGGGT 60 Novel Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 2 1 1 60 2 35185906 35185927 TTCTGTTCCTGAGCATCGT 59 35185951 35185969 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049286.1 ENSRNOG00000061114 ENSRNOT00000075137 3 1 1 80 5 113814360 113814383 AGATTTCACCTCACATGCGA 60 113814299 113814319 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07024722.1 ENSRNOG00000056897 ENSRNOT00000080161 3 1 1 80 16 12662097 12662118 CCTATGGCCATTTACTCAAAGG 59 12661913 12662056 ACCTTCTCATCCAGGTCTG 58 Novel Rattus norvegicus 81 AABR07054887.1 ENSRNOG00000061217 ENSRNOT00000090602 3 1 1 80 3 173166289 173166310 GAATCCTTCTCAGAAGAGTCTC 58 173166027 173166250 TCCCAAATGTAGCCTATAGCA 59 Novel Rattus norvegicus 81 AC117058.1 ENSRNOG00000045729 ENSRNOT00000071773 1 1 1 80 16 81991259 81991277 AGCAGGATTCAGGCTAACG 60 81991195 81991216 ACAGGCTTTCCTAGCTAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057217 ENSRNOT00000083422 2 1 1 60 3 22047456 22047478 GATACAGAGAAGATTAGCATGGC 59 22047418 22047436 GAACGCTTCACAGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057217 ENSRNOT00000083422 3 1 1 60 3 22047461 22047483 GGAACGATACAGAGAAGATTAGC 59 22047423 22047441 CTTCACAGATTTGCGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050064 ENSRNOT00000070820 2 1 1 60 3 114919719 114919741 CACCTGATCTTGTCTAATCTTGG 59 114919681 114919701 TTCAGATACTCATCAGGACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026233.2 ENSRNOG00000055604 ENSRNOT00000081838 1 1 1 60 16 68634405 68634425 TCTTGTCAGGAAGGTACTCAG 59 68634447 68634465 GCTATCACATCCCAGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000051455 ENSRNOT00000084450 1 1 1 60 3 148345002 148345022 AACATGCTACAGTGATGAAGG 58 148344962 148344983 CTACTCAACCTCTTCTGTAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056609 ENSRNOT00000079958 2 1 1 60 3 177005381 177005402 TACTCTAGGTATGTTGACTCCA 58 177005421 177005441 ACAACTATTCAGGCAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014690.1 ENSRNOG00000054903 ENSRNOT00000079570 2 1 1 81 14 26654441 26654462 TCAGCTACATGTAGATGATCCT 58 26654501 26655639 ACAGTCTGAGGAGATGTATAGG 58 Novel Rattus norvegicus 81 AABR07014885.1 ENSRNOG00000053058 ENSRNOT00000081289 3 1 1 94 14 35802376 35803074 CGATGGCACTGATTTGAGAG 59 35802301 35802322 TCTTATTAACTCTTTGCTGCCC 59 Novel Rattus norvegicus 81 AABR07031380.1 ENSRNOG00000058674 ENSRNOT00000090177 3 1 1 116 18 11722022 11723830 GAAAGAGAAGCCAAGGCAC 59 11723910 11723928 CTAGCACTGAGCACCTACC 60 Novel Rattus norvegicus 81 AABR07014987.1 ENSRNOG00000059475 ENSRNOT00000077077 1 1 1 109 14 43166524 43171729 TGAAAGACTAGGTGCTGCA 59 43171802 43171820 TTCCTGTTCCATTTGCCCT 60 Novel Rattus norvegicus 81 AABR07062800.1 ENSRNOG00000054861 ENSRNOT00000079649 3 1 1 95 6 9635387 9635405 CTCTGCCATGAAGGATGTG 58 9628787 9635330 GTGTTCATTAGATCTTCACGC 58 Novel Rattus norvegicus 81 AABR07047044.2 ENSRNOG00000060636 ENSRNOT00000090029 1 1 1 81 5 17064764 17064784 ATTAAACACCACGAGAGTCAC 58 17063418 17064721 AGCCTTGGACCTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07062812.1 ENSRNOG00000058659 ENSRNOT00000084969 2 1 1 82 6 10278967 10293491 AGTCTCATGATCTCCTATGCC 59 10278905 10278923 TTCTGCACTGGAGAAGGTC 59 Novel Rattus norvegicus 81 AABR07029768.2 ENSRNOG00000055459 ENSRNOT00000085491 1 1 1 84 10 49335102 49335120 TGAACCGGAATGAACAGGA 59 49333875 49335054 TGTGACCTGATGTCACCAC 60 Novel Rattus norvegicus 81 AABR07047174.3 ENSRNOG00000058791 ENSRNOT00000090341 3 1 1 97 5 22247645 22253452 GGAGTTTCAGATCCTCCTCTC 59 22253511 22253529 GAATTCCCTGAGGTCCTCC 59 Novel Rattus norvegicus 81 AABR07047189.1 ENSRNOG00000053937 ENSRNOT00000078949 2 1 1 93 5 22975144 22975162 CCTCTGTCGGAAGGAATGG 60 22975218 22979542 ACATTAACCCTCAGCACCTC 60 Novel Rattus norvegicus 81 AABR07000436.1 ENSRNOG00000060284 ENSRNOT00000079436 1 1 1 83 1 12483554 12485326 CAGAATAACGTTGTACAGGTCTC 59 12483493 12483511 TTGCATTAGCATGCTGCTG 60 Novel Rattus norvegicus 81 AABR07061096.1 ENSRNOG00000058873 ENSRNOT00000080070 3 1 1 122 4 104290716 104290736 TCATATGTGGCATTTCTCCAC 59 104301204 104301224 CCACCTGAAGTTTAACTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 1 2 2 80 10 67111281 67127725 TCTCTGGAACTTACAGAATGGA 59 67111222 67111240 GAAGAGCTGGTCTTCTGGA 59 Novel Rattus norvegicus 81 AABR07047531.1 ENSRNOG00000060892 ENSRNOT00000079218 3 1 1 88 5 36692612 36692897 AAGCCTGAAGATTTGCACG 59 36692542 36692561 GTGATGGCCAGTTCATTCTC 59 Novel Rattus norvegicus 81 AABR07000484.1 ENSRNOG00000054373 ENSRNOT00000077965 3 1 1 90 1 14527821 14527839 CCTACTGAAACTTGGCCCT 59 14527893 14549230 ATCCAGCTTAGTGCCACTC 60 Novel Rattus norvegicus 81 AABR07047823.1 ENSRNOG00000058407 ENSRNOT00000080092 1 1 1 80 5 49387708 49387728 AGTTACTCGAGAAGTTGACCA 59 49387769 49389520 AGTATGTGCCATACCTGGTG 60 Novel Rattus norvegicus 81 AABR07015800.1 ENSRNOG00000054201 ENSRNOT00000081142 1 1 1 80 14 77652156 77668395 TGAAATTGAGGCTCAGGCA 60 77652094 77652114 CTCAGTTTCACCTTCTGTGTC 59 Novel Rattus norvegicus 81 AABR07048010.1 ENSRNOG00000057330 ENSRNOT00000091600 3 1 1 83 5 56684245 56684878 CCCTTTCTAAAGATAACACAGCG 60 56684916 56684939 GCATGTTGTCATATACTCTTAGGG 59 Novel Rattus norvegicus 81 AABR07030386.2 ENSRNOG00000055324 ENSRNOT00000079877 2 1 1 62 10 83617753 83617773 GGGATTCTCGTAAGGGTAGAG 59 83604528 83604546 CTGCTCAATTTCCAGACGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000639.1 ENSRNOG00000056218 ENSRNOT00000089617 3 1 1 62 1 20737264 20737283 TTGATTTATCCACTGGCCCA 59 20735993 20737239 TTCTGACGGCTCCATTCAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07061382.2 ENSRNOG00000054709 ENSRNOT00000091643 1 1 1 80 4 120130204 120132212 TGAGAGCAGGAGAAGATGC 59 120130142 120130163 GAATTTGAGCTTATCTCAGCGG 60 Novel Rattus norvegicus 81 AABR07048379.1 ENSRNOG00000058548 ENSRNOT00000089154 1 1 1 145 5 75678007 75678025 GTCCCACAACCCTAAATGC 59 75677437 75677898 ATCACAGAACCTGCTCCAC 60 Novel Rattus norvegicus 81 AABR07030498.1 ENSRNOG00000059149 ENSRNOT00000086815 1 1 1 80 10 90709283 90709302 TACATCGTACCAGCCTTGTC 60 90701353 90709240 AACTGCAACTTCCAAGCTG 59 Novel Rattus norvegicus 81 AABR07016556.3 ENSRNOG00000058894 ENSRNOT00000083639 3 1 1 62 14 103457612 103457630 CCCTAGTAACAACGTCCCA 59 103457315 103457333 TTGTCTGACAAAGCTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061465.1 ENSRNOG00000056263 ENSRNOT00000081330 3 1 1 94 4 126984175 126985784 AACCCATCAGTTTCAGCAG 58 126985841 126985860 AAATCAGTCCAGAACCATCC 58 Novel Rattus norvegicus 81 AABR07016592.1 ENSRNOG00000061602 ENSRNOT00000085828 1 1 1 80 14 105914836 105914854 ACGTGAGATCTCGTTACCG 59 105914895 105916805 CAGAATATTCATCTGCACTGCT 59 Novel Rattus norvegicus 81 AABR07048939.1 ENSRNOG00000056861 ENSRNOT00000089682 2 1 1 84 5 98102228 98102246 GGTGAAATGCCTGGAAACC 59 98114130 98114148 TCATGATTCCAAGCCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016674.1 ENSRNOG00000055024 ENSRNOT00000082749 3 1 1 106 14 110103163 110234051 TACTTATCACGTGGGAAGCT 59 110103076 110103094 ATCAGAGACCTGTGCTGTC 59 Novel Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 3 1 1 63 4 146294992 146296369 ACCCATGAAGGAAGGACTG 59 146294947 146294966 ATGACTGAATTCAGCAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048977.1 ENSRNOG00000055657 ENSRNOT00000089752 1 1 1 87 5 98846535 98846554 CAGACTTTATCAGGAGCCTC 58 98830827 98830851 GCTCTTTCTTGATAGGTTGTATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.6 ENSRNOG00000056632 ENSRNOT00000085367 3 1 1 82 10 93273072 93274764 GTGTGAAGAACTTCAAAGGAGG 60 93274804 93274825 TGATTCCAGTTTGAAACCAGTG 60 Novel Rattus norvegicus 81 AABR07049002.1 ENSRNOG00000060976 ENSRNOT00000080603 1 1 1 80 5 99320049 99347207 ATTAATAAGGGCACTTCAGGTC 58 99319990 99320008 GACTCACTGATCACCTCCA 58 Novel Rattus norvegicus 81 AABR07061847.1 ENSRNOG00000061410 ENSRNOT00000084210 2 1 1 92 4 149184299 149191772 CTGTGGAACTGCAAACGAG 60 149184225 149184246 GTCAATAGGTGTGATTCGAGTG 59 Novel Rattus norvegicus 81 AABR07030642.1 ENSRNOG00000054591 ENSRNOT00000079534 2 1 1 80 10 97347950 97349586 GAAGAGATGGAAGGCTGGA 59 97349627 97349648 TTTCCACTGTCATCTACATCCA 59 Novel Rattus norvegicus 81 AABR07049111.2 ENSRNOG00000058292 ENSRNOT00000081710 1 1 1 80 5 105967275 105968049 ATTCGGTCATGAAACTGCTG 59 105967214 105967232 GACAGCTTAATTCCTGCCC 59 Novel Rattus norvegicus 81 AABR07062020.1 ENSRNOG00000053503 ENSRNOT00000092107 1 1 1 60 4 156469094 156469112 CTCCACGATGACATGAGGA 59 156468283 156468302 TCAGGGCAGTGAATACATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016865.1 ENSRNOG00000051560 ENSRNOT00000086712 3 1 1 66 15 2549176 2549195 TGAGGAAAGATCCCTATGGA 57 2549644 2549664 AGGAGGATATACAGGATGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001018.5 ENSRNOG00000058487 ENSRNOT00000082414 3 1 1 83 1 33717913 33720648 TTCTTGATGATGGAGAGTAAGGG 60 33717852 33717870 CTGGATACGCTGACCTAGG 59 Novel Rattus norvegicus 81 AABR07049156.1 ENSRNOG00000051401 ENSRNOT00000079787 3 1 1 90 5 107945217 107945237 CCCACTACACATAGAAGACTG 58 107945289 107945307 AAGCCTTTCTTGGTATCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030699.1 ENSRNOG00000053652 ENSRNOT00000083512 3 1 1 60 10 100410541 100410561 AACCAGATTTACCTTTCCACC 58 100411698 100411717 GATTCTGAACCGTCTGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC115420.3 ENSRNOG00000056433 ENSRNOT00000074731 2 1 1 80 4 157457991 157458010 GGCTTTCTCAAACTCGTCAC 60 157458052 157460158 CACAAGTTACTGCCTTCTCC 59 Novel Rattus norvegicus 81 AABR07017103.1 ENSRNOG00000054415 ENSRNOT00000091892 2 1 1 80 15 10966749 10969488 AATGACTGGGTACCAGGAC 59 10969528 10969550 CCAAGTGTTTGTCCATCTATCAG 60 Novel Rattus norvegicus 81 AABR07049350.1 ENSRNOG00000060443 ENSRNOT00000082950 1 1 1 114 5 118035710 118035728 ACCACATCCACTACAGCTG 59 118037219 118037237 CAGTGAGGAACCAGCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049350.1 ENSRNOG00000060443 ENSRNOT00000082950 2 1 1 115 5 118035709 118035727 GACCACATCCACTACAGCT 59 118037219 118037237 CAGTGAGGAACCAGCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.3 ENSRNOG00000055871 ENSRNOT00000081013 3 1 1 79 10 102765112 102766382 ACTGTGAGACCAAAGGGTG 60 102766422 102766443 GGAAATCTAAGCAGCAAGTAGC 60 Novel DesignRelaxed Rattus norvegicus 81 AC121719.1 ENSRNOG00000057875 ENSRNOT00000079525 2 1 1 60 5 118820855 118820874 AGTGCCTCTCAAGATCTACC 59 118851973 118851992 ATATCTCACCTTGCCACCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030791.1 ENSRNOG00000052940 ENSRNOT00000090488 2 1 1 60 10 104820045 104820064 ATGACACAATTCCTGCTTCC 59 104818624 104818644 AGGATGCATAAGTAGAGGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030834.1 ENSRNOG00000052569 ENSRNOT00000080833 1 1 1 84 10 105452801 105456184 AATTACCGACATACACTCCTG 58 105452737 105452755 CTCAGTTCTCCATCAGAGC 57 Novel Rattus norvegicus 81 AABR07030854.2 ENSRNOG00000051943 ENSRNOT00000082347 3 1 1 85 10 106573962 106573980 AAAGATGGGAGGTAGGGTC 58 106570846 106573914 GAAGATCATGCCATTCCTGG 59 Novel Rattus norvegicus 81 AABR07049514.1 ENSRNOG00000058427 ENSRNOT00000087262 3 1 1 69 5 125221831 125221850 ACCATACTTGGATGCTTCCT 59 125222747 125222768 GGAAGTTGGTTAGAAGTTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049631.1 ENSRNOG00000059783 ENSRNOT00000083930 2 1 1 98 5 131593527 131593545 CATACCTTGAGAGCTGCCA 60 131593147 131593465 ATCTGGTCCTCGTTTCCTG 59 Novel Rattus norvegicus 81 AABR07062350.1 ENSRNOG00000053476 ENSRNOT00000081475 2 1 1 111 4 170476689 170476707 AGATTCCTCAGTAGCCACC 59 170473542 170473560 TCAGTGGTTCAGGAAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 2 1 1 60 4 176075844 176076537 GCCAGAACCTCTACATCCA 59 176076560 176076579 TCACAGTTCTTGTAGTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031533.3 ENSRNOG00000058311 ENSRNOT00000091764 3 1 1 89 18 18098749 18098767 AAGAGACTTGTGTTCCCGG 60 18098820 18104868 GATTGGAGGAAGGTCCCAC 60 Novel Rattus norvegicus 81 AABR07031533.2 ENSRNOG00000052914 ENSRNOT00000084983 3 1 1 85 18 18301456 18301477 TGGAGAACTAACTGGATACCTG 59 18292170 18301415 GGATGCAAGGTAAAGTATCTATGC 60 Novel Rattus norvegicus 81 AABR07017649.2 ENSRNOG00000058787 ENSRNOT00000080877 1 1 1 84 15 29652321 29652564 TTTGTCTGGATGTAATATGGCC 59 29652258 29652276 CTCCAGGGTGACTTCTTCC 59 Novel Rattus norvegicus 81 AABR07049695.2 ENSRNOG00000051636 ENSRNOT00000089245 1 1 1 81 5 133710459 133710477 TAGAGGAGAGTGTGATCCG 58 133710522 133711050 CTTGTTTCTGGGTCCTCTC 58 Novel Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 3 1 1 61 15 29664828 29666864 CAACAACCAGGGAACAGAG 58 29666888 29666907 GGGAACTTCTCAGTTCTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062513.2 ENSRNOG00000052942 ENSRNOT00000086702 1 1 1 80 4 180828669 180828687 ACTAGAGACCACAAGTGGA 57 180820130 180828626 GACAGAGAACTTCTGTGAGG 58 Novel Rattus norvegicus 81 AABR07049695.3 ENSRNOG00000052757 ENSRNOT00000077735 1 1 1 88 5 133717837 133720410 CAGAGTCTATGTGTAGTTTCCA 57 133720455 133720477 GCTTCCTGGATTCTATATCTTCC 58 Novel Rattus norvegicus 81 AABR07049769.1 ENSRNOG00000055686 ENSRNOT00000085080 1 1 1 80 5 137290714 137290866 GGTTGTTAATCAGAGGACATCG 59 137290906 137290925 GAACAGGGATTATGCAGGGA 60 Novel Rattus norvegicus 81 AABR07017770.2 ENSRNOG00000061293 ENSRNOT00000089143 1 1 1 87 15 30883496 30883514 TCATGCAGAGGGACATGTG 60 30883565 30883805 TGGGCCACATTACATCCAG 60 Novel Rattus norvegicus 81 AABR07031740.1 ENSRNOG00000057082 ENSRNOT00000089581 3 1 1 72 18 31305843 31305861 CAAGTCTGAAGAGACCGCA 60 31296204 31296222 TGGTCTTCTGTTCCCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049886.2 ENSRNOG00000052899 ENSRNOT00000079457 2 1 1 85 5 142511360 142511545 CCCGGTTTATTAGAAACAACTC 58 142511296 142511315 GATCAGGGTTCCTTGATCTC 58 Novel Rattus norvegicus 81 AABR07032119.1 ENSRNOG00000056227 ENSRNOT00000087183 2 1 1 87 18 47266276 47266294 GGAAGTCTACAACCAGCAG 58 47265967 47266226 AGGAAGAACCTGAGGTAACC 59 Novel Rattus norvegicus 81 AABR07001700.1 ENSRNOG00000055830 ENSRNOT00000089308 2 1 1 81 1 55298848 55436472 GGACCCTAAGGTTGAAGAGG 60 55298786 55298806 ATTGAGCAGACACTTGTTGTC 59 Novel Rattus norvegicus 81 AABR07032123.1 ENSRNOG00000057282 ENSRNOT00000088498 1 1 1 80 18 47924646 47924665 AAGTCAGCAGAGACTTTGGA 59 47923387 47924607 TGGAGTTCTTCTCCTTTACTCTG 60 Novel Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 1 1 1 60 18 50094030 50133444 TATCCAGAGTCACTCAGAGG 58 50093989 50094009 GCCAGATCTGTCAAAGAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 2 1 2 84 18 50430251 50434457 TACCACCAGTGTGCTAAGG 59 50430185 50430203 TTAGCATCTTCTGCGTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018183.1 ENSRNOG00000053041 ENSRNOT00000079248 1 1 1 85 15 45237984 45238002 CAGAACTTGCCACTGACTG 59 45231647 45237940 GGCTTGATACTAATGAATGAGGAG 59 Novel Rattus norvegicus 81 AC118858.1 ENSRNOG00000052836 ENSRNOT00000080156 2 1 1 101 18 51732430 51732448 CTCTCGTACCCACTCAGAG 59 51732621 51732639 AGGAGAGGGTGGATACGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018262.1 ENSRNOG00000052442 ENSRNOT00000088926 1 1 1 80 15 49535978 49537419 CACCAATTCCTATTTCCTTGGAC 60 49535920 49535942 ACTCTTACCATCTGATCATCGAC 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 3 1 1 69 1 64235373 64236935 TCACTAAGCAGACACAGGC 60 64236967 64236986 CAACTTGTCTGCTTTGACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032261.5 ENSRNOG00000057973 ENSRNOT00000088490 3 1 1 62 18 57544347 57544365 AAGATCCTCTGGGAATGGA 57 57545943 57545961 GGTGCAGTTCCTTTGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018349.1 ENSRNOG00000058454 ENSRNOT00000079047 1 1 1 88 15 53495286 53495805 ACTCTAATGGGTAGTAGCCG 58 53495217 53495235 AACTCGAAGTGTTCCACAC 58 Novel Rattus norvegicus 81 AABR07063654.3 ENSRNOG00000061233 ENSRNOT00000091337 1 1 1 82 6 40092194 40093218 TCGGAAAGGACTTCTTAGGG 59 40092131 40092152 CCATGTTCATTTCTTCCCTGAC 60 Novel Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 1 2 2 80 1 71223090 71223111 CATCCTAGAGCAAGGTAATGAG 58 71207957 71223049 CATCCAGACTCCAATGCTG 58 Novel Rattus norvegicus 81 AABR07050482.1 ENSRNOG00000053174 ENSRNOT00000082039 3 1 1 88 5 166799797 166803242 ACGAAGAGATCCATGCCAG 60 166803293 166803312 TAAATTCTCGGAGGTGCCTC 60 Novel Rattus norvegicus 81 AABR07032409.1 ENSRNOG00000057481 ENSRNOT00000082835 3 1 1 115 18 64327139 64327157 AGACAACCTGAGACACTGC 60 64327235 64333573 AATGTTCCTGCAAACAGAGC 60 Novel Rattus norvegicus 81 AABR07018504.1 ENSRNOG00000054268 ENSRNOT00000080169 3 1 1 80 15 62346507 62346526 TAACAGCTGGCAAACTTCAG 59 62346566 62379367 CCTTCGACTTCCAATTCTTGTC 60 Novel Rattus norvegicus 81 AABR07063751.1 ENSRNOG00000059011 ENSRNOT00000090517 1 1 1 60 6 45861252 45866014 TAGTCCTGACAGGAGGACC 60 45866036 45866056 ATAGGCTTTGTGTTTGGATCC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07018807.1 ENSRNOG00000060601 ENSRNOT00000079749 3 1 1 137 15 73988467 73988485 CAGATGAGCATGCAGATGG 59 73988580 74047583 GAAGAAATTCTAGAACCCATAAGGG 59 Novel Rattus norvegicus 81 AABR07002784.2 ENSRNOG00000060634 ENSRNOT00000088189 3 1 1 110 1 84959120 84959140 GAAACATCCAAGGGTCTTTGG 60 84953509 84959048 GCTTCTTCCCTCTGTGGAG 60 Novel Rattus norvegicus 81 AC107190.1 ENSRNOG00000056442 ENSRNOT00000085238 2 1 1 89 6 50866563 50866584 GCTTTGAACTGAGATATGTCAC 58 50866634 50869467 TTCAGGGTTCCTAGAGCTG 58 Novel Rattus norvegicus 81 AABR07032563.1 ENSRNOG00000053639 ENSRNOT00000081148 1 1 1 80 18 71988615 71991059 GGAATGTGGCTTAAGAATCCA 58 71988555 71988574 TTTAAGATGGCGCCATACAG 59 Novel Rattus norvegicus 81 AABR07032563.1 ENSRNOG00000053639 ENSRNOT00000081148 2 1 1 80 18 71988616 71991060 TGGAATGTGGCTTAAGAATCC 58 71988556 71988574 TTAAGATGGCGCCATACAG 58 Novel Rattus norvegicus 81 AABR07002898.1 ENSRNOG00000054776 ENSRNOT00000084059 2 1 1 79 1 88612296 88612314 GAGACGGAAGTGGTGAGAG 60 88613000 88613018 AGAGGACAAGAGGGAGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019162.1 ENSRNOG00000059860 ENSRNOT00000084495 3 1 1 95 15 91810960 91810978 AAATCCCAGAGACAAGCAC 58 91811035 91818933 AGTTCTGATAACTTCCTGTGG 58 Novel Rattus norvegicus 81 AABR07032748.1 ENSRNOG00000057271 ENSRNOT00000078729 3 1 1 81 18 79062984 79063097 CTCACAAGACAGAATGTGGT 58 79063141 79063159 TCTTTGAAGCATGTGGAGC 59 Novel Rattus norvegicus 81 AABR07032758.1 ENSRNOG00000052976 ENSRNOT00000089151 1 1 1 81 18 80201038 80201057 TTAAACTTCCAGCTGATGCT 58 80197366 80200997 TCTTACAGATAATCATGGGCTG 58 Novel Rattus norvegicus 81 AABR07051515.1 ENSRNOG00000058364 ENSRNOT00000080459 3 1 1 81 3 14660158 14700283 TGCAGATCAGGAGTTGGAG 59 14660095 14660113 CGAGTTCTATGGAGCTCCC 59 Novel Rattus norvegicus 81 AABR07064635.1 ENSRNOG00000056583 ENSRNOT00000089798 1 1 1 87 6 88087808 88087826 CTACAGCAACCTTCTCAGG 58 88081239 88087759 GGAATGGCTGTAGATAGTCTC 58 Novel Rattus norvegicus 81 AABR07003024.1 ENSRNOG00000053072 ENSRNOT00000082613 1 1 1 80 1 93454487 93454505 CAGAAGACCATCTTGCCCT 59 93397947 93454447 GAGTTTATCCTGCTCTGTTTCAG 60 Novel Rattus norvegicus 81 AABR07019437.7 ENSRNOG00000060778 ENSRNOT00000081262 2 1 1 104 15 105513079 105513097 CATTGGTTAGTGCACCAGC 60 105513165 105518750 TGGTACCTTTCACATCCGG 59 Novel Rattus norvegicus 81 AABR07051592.2 ENSRNOG00000054125 ENSRNOT00000089977 2 1 1 80 3 17667334 17667473 CTGTGGATAACAGATGGCA 57 17667515 17667535 GATAGTTTCTCCCAGAGATGC 58 Novel Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 3 1 1 88 1 95240941 95240959 AACAATGACAACAGCAGCA 59 95241010 95241717 ATCTTGGGTCCAAGATAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 3 2 3 92 11 27575827 27575845 GAAAGGAGAAGTCAGTGGG 58 27575899 27576284 CATATGATTCATTGCTGGCTG 58 Novel Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 3 1 1 63 6 110258888 110258906 CCATGCCAACACTTCACAG 60 110258331 110258861 GGACCCAGAATGTTCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065118.2 ENSRNOG00000057343 ENSRNOT00000078206 1 1 1 80 6 110697180 110697199 CTCCAGTCACTGAACCTGAG 60 110697242 110697832 CACATTAGTCCGGAGACCA 59 Novel Rattus norvegicus 81 AABR07051957.3 ENSRNOG00000060921 ENSRNOT00000087637 3 1 1 81 3 30297851 30297870 TGGAGGAGAGGATTTCTGTC 59 30297911 30300517 CGAGATCTCTTGGAAACTTTCC 59 Novel Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 3 1 1 71 11 35609376 35609397 TTTAGGAAAGGAACAAGTGGAG 58 35609426 35611103 GTTTGCTCTTCCTACATTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 2 1 1 63 3 36633391 36633410 CCGTGACTTTCCATAATGCT 58 36581247 36633365 CAAGGGTTTAACCAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033757.1 ENSRNOG00000056134 ENSRNOT00000081755 3 1 1 186 11 38881565 38888602 GTGACGTCTTAAGAAAGAAGTCTC 60 38888747 38888765 CAGTTGTGTCCAGCTATGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07052322.1 ENSRNOG00000061267 ENSRNOT00000086972 1 1 1 80 3 47554631 47554649 CCTCATCGTCCTAGTCCAG 59 47552676 47554589 ACTGTCTAGACAACATAGGCA 59 Novel Rattus norvegicus 81 AABR07033851.2 ENSRNOG00000060551 ENSRNOT00000089542 3 1 1 86 11 40534289 40557205 TGGGAACATTCAACTGAGGT 59 40534222 40534240 CTGTGGCACTTTCACTCTC 59 Novel Rattus norvegicus 81 AABR07052347.1 ENSRNOG00000059316 ENSRNOT00000085686 2 1 1 86 3 48413340 48413358 CTGAGGGTATACCGCTGTC 59 48411520 48413291 TTGTATGGATGCACAAGCTC 59 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000088159 3 1 2 80 11 44736640 44753148 GAAGCTCCTGAAGAGAAAGC 59 44736579 44736598 GACATCCCAAATGTTGAGCC 60 Novel Rattus norvegicus 81 AABR07021503.1 ENSRNOG00000056444 ENSRNOT00000089079 3 1 1 80 13 75234115 75234133 GCGTTGCCAAATCTTAAGC 58 75234177 75235090 CCCACAAACTCAAACTGGT 58 Novel Rattus norvegicus 81 AABR07004033.1 ENSRNOG00000058845 ENSRNOT00000077426 2 1 1 83 1 122881550 122889159 AGAACCCAGGAACCAAGAC 59 122889205 122889224 GTGGACACAGATGAATGTGC 60 Novel Rattus norvegicus 81 AC133316.1 ENSRNOG00000051541 ENSRNOT00000084878 1 1 1 101 6 127258268 127259508 TACTTCAGGAAGGCCAGAC 59 127262131 127262152 TGGTCTCTGCTTTCTTATTCTC 58 Novel Rattus norvegicus 81 AC120076.1 ENSRNOG00000060422 ENSRNOT00000080870 2 1 1 80 11 76808378 76812605 ACCTCATTGGACTATTGAAGC 58 76808318 76808339 CTAGAAGCTGACTAATTCGGTG 59 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 3 2 2 100 6 129000925 129000943 TCCTGAGATTGTGATCGCC 60 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07034636.1 ENSRNOG00000056037 ENSRNOT00000083950 1 1 1 80 11 81936521 81936668 CTACAACAGGAAGATCAGAAGGA 60 81936708 81936726 CTTAGTCCTCTTGCACCGT 59 Novel Rattus norvegicus 81 AABR07034669.1 ENSRNOG00000056559 ENSRNOT00000084186 3 1 1 109 11 83413093 83415193 TACATCGCGAGCAATACCT 59 83415262 83415284 GTTCTGTCTTGATACTTGAGAGC 59 Novel Rattus norvegicus 81 AABR07021823.2 ENSRNOG00000060190 ENSRNOT00000079818 1 1 1 149 13 93936987 93937005 TGGACCTTTCAATTTGCGC 60 93936185 93936874 CAGAGGAGTCTTGCAAGGA 59 Novel Rattus norvegicus 81 AABR07065486.1 ENSRNOG00000060055 ENSRNOT00000088443 3 1 1 80 6 130796917 130797527 GCTTCTGAGAACTCAACTCCT 60 130797564 130797587 CCAATTCTTCAGATAGGTCAATGG 60 Novel Rattus norvegicus 81 AABR07072264.3 ENSRNOG00000058902 ENSRNOT00000082278 1 1 1 80 11 86926580 86926598 CCAGTGACAGGAAGTTGAC 58 86926640 86926974 CAGACGATTTGCTATCTGGAG 59 Novel Rattus norvegicus 81 AABR07065504.1 ENSRNOG00000051387 ENSRNOT00000083887 3 1 1 100 6 132464332 132464995 CCTTCCGAAGAGGTTCCAG 60 132465055 132465077 TAGGAGTTTGTCTGGAGAAAGAC 60 Novel Rattus norvegicus 81 AABR07052750.2 ENSRNOG00000060591 ENSRNOT00000080439 2 1 1 80 3 71947943 71950949 AAGTGAGCTAAGAGGTCCT 57 71950992 71951011 ACACCTTCTCTTTGAACTGG 58 Novel Rattus norvegicus 81 AC110403.1 ENSRNOG00000059701 ENSRNOT00000088915 2 1 1 111 3 72845452 72845471 CAGAGATCCAAGGTTCTGTG 58 72844583 72844605 GACTTTAGACACAGAAGTGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000089751 2 1 2 80 13 101998644 101999236 TCAGTGAGGTGTCAGTCAG 59 101999278 101999298 CATCAGGAGTAGACAAGAAGC 58 Novel Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000090877 1 1 2 80 13 101999534 101999553 CTGATGTTGCCACCATACTC 59 101999593 102018727 CCTGTAGATCTCCAGTAGTGTG 60 Novel Rattus norvegicus 81 AABR07052788.1 ENSRNOG00000058334 ENSRNOT00000078139 3 1 1 81 3 75235997 75239117 GTGATTAAGACCCTTTATAGGTCCT 60 75235940 75235959 TATTCTCACCCTTTGCCTGG 60 Novel Rattus norvegicus 81 AABR07052926.1 ENSRNOG00000057412 ENSRNOT00000081064 2 1 1 74 3 84526852 84526870 GTCATCTCTGGACTCGAGC 60 84526232 84526250 AGGCCTGATGTTGAAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 2 1 1 65 12 6233869 6233887 GTCCAGACTCAGTGAGGAG 59 6233916 6234290 GTGCTGTGCCTTTATGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065897.1 ENSRNOG00000055127 ENSRNOT00000077224 3 1 1 81 6 144056451 144062399 TTATCAAGACAATGGGTCAGC 58 144062442 144062460 TTCTCTGAAGCACAGTGTG 58 Novel Rattus norvegicus 81 AABR07024542.1 ENSRNOG00000058571 ENSRNOT00000084733 2 1 1 87 16 4439788 4439808 GAGCCACTCTTAAAGAAAGCT 58 4439857 4443036 TTCTGACAGCTGTGAAAGC 58 Novel Rattus norvegicus 81 AABR07053412.1 ENSRNOG00000051776 ENSRNOT00000078040 1 1 1 80 3 105316721 105330175 AGATGTCTCATTCAGGAAAGTC 58 105316662 105316680 GTAGTTATGCAGCAGGCTC 58 Novel Rattus norvegicus 81 AABR07024580.1 ENSRNOG00000052302 ENSRNOT00000084561 3 1 1 61 16 6690603 6690621 TTTCAAAGCCCACACTGAG 58 6689304 6689323 TGCCAAATAGGTAGGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053435.1 ENSRNOG00000056640 ENSRNOT00000079022 2 1 1 81 3 106923381 106923401 TGTCTAGCCTTGAACTCTGAG 59 106923214 106923344 CAATCTTGATTCATAAGCCTAGAGG 60 Novel Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 2 1 1 60 9 4621543 4622735 AAGGAATTGTGGGTGATTGG 59 4622756 4622776 TCATCAAACCTCTCATTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035412.2 ENSRNOG00000054485 ENSRNOT00000080876 3 1 1 114 12 13803484 13803503 CTTCCTCATTCGCCTAAGAG 58 13802832 13802850 GCTTTCCATATCCCTGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066470.1 ENSRNOG00000054362 ENSRNOT00000087249 1 1 1 144 9 9087118 9087136 TCAGCAGGTTGGGTATGTG 60 9104431 9104449 TCCTTGTGCCTATGTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066529.3 ENSRNOG00000056941 ENSRNOT00000086135 1 1 1 67 9 10804990 10805008 GTGCTACAGCTTCTAACCC 58 10804084 10804102 TAGGTTGTTCACGGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053516.2 ENSRNOG00000060187 ENSRNOT00000077223 2 1 1 67 3 112330372 112330390 AAGTGAACAACGGACACCA 60 112333356 112333379 CTCGTTAGAAGCTTAAGAGTTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.2 ENSRNOG00000058110 ENSRNOT00000083929 2 1 1 135 1 153446209 153461778 GCTTTCCTCAGAGCAATGC 60 153446092 153446110 TTTCTTTGCTTGCACAGCA 59 Novel Rattus norvegicus 81 AABR07066820.1 ENSRNOG00000052724 ENSRNOT00000082584 2 1 1 80 9 17500956 17500974 GATTCCTCAGTGTCTGCAG 58 17501017 17501625 CTTCTTTGCTGGATCTCTGG 58 Novel Rattus norvegicus 81 AABR07024799.2 ENSRNOG00000059758 ENSRNOT00000089776 3 1 1 86 16 17289973 17289993 AGACTTCTGTCTCTACTCCTC 58 17290041 17310336 GGAAGATCTTGTCAGGCTC 58 Novel Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 3 1 1 69 9 18818540 18820402 GCAGATGAATGGATGAGTAGGA 60 18818492 18818510 ATGTTCTGTGGACCCACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.5 ENSRNOG00000058675 ENSRNOT00000091067 2 1 1 80 12 22351016 22351202 TGCACCAATATCCCTCTGC 60 22351246 22351264 GTTAGAGCAGGAAGGGAGG 59 Novel Rattus norvegicus 81 AABR07066861.1 ENSRNOG00000054665 ENSRNOT00000086266 3 1 1 93 9 19448020 19448038 GGAGACAGGTGGAGTTGAG 59 19447636 19447657 TTCAGCGATGTGACTAGTACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053787.2 ENSRNOG00000053162 ENSRNOT00000081457 1 1 1 80 3 126176715 126181273 CATGAAGATTCACAGAAAGGTAGAG 60 126181307 126181329 CTTGTCCTTTCGGAATATGACTC 59 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000085881 1 1 2 93 16 31172100 31172201 AGGATCAGATCAGGTTCCTG 59 31166565 31166583 GATGGAGACACAGCTCCTC 60 Novel Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 2 1 1 61 9 29403361 29403381 AGAGGCCATCTTGTAATGGAG 60 29403404 29454653 CCCTGTTAGAATGCCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025387.1 ENSRNOG00000052518 ENSRNOT00000086642 2 1 1 82 16 36374739 36375206 CAAACCAGCAACCCTAACG 60 36375252 36375270 GATATTCGCCACACCACAG 59 Novel Rattus norvegicus 81 AABR07005569.1 ENSRNOG00000057326 ENSRNOT00000077794 3 1 1 81 1 187973703 187974423 TACTCTGGCCAGGTATTCC 58 187974467 187974486 TGGAAGAATGGTCGTTTCTG 58 Novel Rattus norvegicus 81 AABR07067210.1 ENSRNOG00000053227 ENSRNOT00000079131 2 1 1 92 9 35148341 35148360 GAGCAGCAAAGTTGATTGTG 58 35148412 35150113 GCAAATCTTCCCATGGATACTC 59 Novel Rattus norvegicus 81 AABR07005572.1 ENSRNOG00000051432 ENSRNOT00000084979 2 1 1 96 1 188166113 188166131 ATCTGAATCCACCGTGAGC 60 188161725 188166057 GTAATTTATCCCAAGCCAGTCAC 60 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859 1 1 3 80 3 142297332 142319130 ATTTCAAGGGTGAACCACAC 59 142297271 142297290 AAAGTGACTGAGACACTGGG 60 Novel Rattus norvegicus 81 AABR07025745.1 ENSRNOG00000052681 ENSRNOT00000077550 3 1 1 81 16 47828518 47829395 CAGGCTTGATGTCAGAGGA 59 47828455 47828474 AAGAGTAGCCTTCCTTTGCT 59 Novel Rattus norvegicus 81 AABR07005779.4 ENSRNOG00000056571 ENSRNOT00000085384 2 1 1 89 1 198164645 198168157 ATCACATGGTCAGAAAGCA 57 198164574 198164595 TCTACTCCATGAGAAATACGAG 57 Novel Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 2 1 1 60 16 58493581 58493599 GTCAAACCACCAGAGATGG 58 58493623 58494259 TCCACCATATCTCTGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000088948 2 1 2 80 16 59999882 59999901 TTTCCAAGGAGCAAATTTGC 58 59999475 59999842 GTTCACCTGGATTTAAACAGTC 58 Novel Rattus norvegicus 81 AABR07026037.1 ENSRNOG00000054950 ENSRNOT00000085711 3 1 1 105 16 60393442 60393463 CTGCCAAAGAAATCAATCACAC 59 60393527 60394898 CTGAAAGTGTCATTCATGCAG 58 Novel Rattus norvegicus 81 AABR07054482.1 ENSRNOG00000061183 ENSRNOT00000091823 2 1 1 111 3 155857430 155858957 CTTACCTGCTCAGATCAAGAG 58 155857339 155857358 ATATCTTCCCAGTGAGTCCC 58 Novel Rattus norvegicus 81 AABR07005837.2 ENSRNOG00000054093 ENSRNOT00000091587 1 1 1 80 1 202712650 202714398 TATCATCTGTAAGCAGGCCC 59 202712589 202712610 GCCATAACCAGAAAGACTAGAG 58 Novel Rattus norvegicus 81 AABR07005871.1 ENSRNOG00000061037 ENSRNOT00000088506 3 1 1 81 1 203452994 203453013 TGGACAATTTACTCAGGCAC 58 203452448 203452950 GTCCAACCATCTGTGAGTG 58 Novel Rattus norvegicus 81 AABR07067728.1 ENSRNOG00000052194 ENSRNOT00000081963 2 1 1 80 9 59582029 59582050 AGATCAAAGGTCAAATCTCCAC 59 59576311 59581990 CGAATCTTGCTGCATAATGAC 58 Novel Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 1 1 1 62 16 64877670 64877688 AGAATGGATGTCAACGCAG 58 64877714 64878377 CTCTTCTGAATGCTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000087549 2 1 2 71 16 65178783 65178802 GGGAGAAGCAGTTTCAAGAC 59 65254109 65254127 AATCCTCAGACACTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC113785.1 ENSRNOG00000059361 ENSRNOT00000088569 2 1 1 80 16 69022587 69022605 CAAGCCATTCCACTCAAGG 59 69009857 69022543 AGCCAGAAATCACCTAGCT 58 Novel Rattus norvegicus 81 AC129370.1 ENSRNOG00000051812 ENSRNOT00000085734 1 1 1 80 9 66878604 66882969 CAAGACGAGAACATGCTACAG 59 66883009 66883029 TGGAGCACTGAATTCTAAGCA 60 Novel Rattus norvegicus 81 AABR07036532.1 ENSRNOG00000053108 ENSRNOT00000090696 3 1 1 124 12 46964892 46971666 GAAGTGCGTCAAGTGATCG 59 46971754 46971772 ACATCTGCCGTAGGTAACG 60 Novel Rattus norvegicus 81 AABR07026281.1 ENSRNOG00000054991 ENSRNOT00000083606 3 1 1 87 16 70487186 70487205 CTCATCTCTTCCTACGCAGG 60 70484463 70487136 AGAAAGGTAGCTCGCAGAG 59 Novel Rattus norvegicus 81 LOC102552829 ENSRNOG00000052879 ENSRNOT00000084277 3 1 1 90 16 71402890 71402908 TAGATGCCAGCCATCTGTC 59 71402959 71406139 TCAAGAATTCTTTCCTCTGCTC 59 Novel Rattus norvegicus 81 AABR07026377.1 ENSRNOG00000061180 ENSRNOT00000082297 1 1 1 60 16 74513534 74513552 GCAAAGTGGTTGGATTGGA 59 74515447 74515465 AAAGCAATGTGCTCAAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC111319.1 ENSRNOG00000058458 ENSRNOT00000082753 2 1 1 112 9 71386847 71387369 TGAAATGATACACCAGGCC 58 71387445 71387463 AGCATGGATAACGTGAGAG 57 Novel Rattus norvegicus 81 AC095937.1 ENSRNOG00000060364 ENSRNOT00000081566 3 1 1 81 1 217931506 217931524 GTTTGCGGTTTCCTGTCTG 60 217925645 217931463 TGTCATGAATCCACTCTTCCT 59 Novel Rattus norvegicus 81 AC098981.1 ENSRNOG00000053867 ENSRNOT00000090640 1 1 1 60 1 218269346 218273161 AAGCTCTATGGAGGTGCAC 60 218269304 218269322 CATCTCAGGGCAGGAAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07006120.1 ENSRNOG00000056396 ENSRNOT00000091992 2 1 1 80 1 222972208 222973709 GACTCAAGAAATGCAGATCCC 59 222972148 222972167 GCAGTACTTGTCAAAGAGGC 59 Novel Rattus norvegicus 81 AABR07072028.1 ENSRNOG00000056436 ENSRNOT00000091800 3 1 1 83 1 226794325 226794343 CTAGGCCAGTGTCAGAACC 60 226794387 226811726 CGTGTGATACATTTCTGGTGTC 60 Novel Rattus norvegicus 81 AABR07037708.1 ENSRNOG00000052695 ENSRNOT00000092116 3 1 1 82 X 28698817 28698836 CAAGTCTGGATCCTCCTGTC 60 28688926 28698777 CGTCAAAGTATCTTAGACACTTGG 60 Novel Rattus norvegicus 81 AABR07026499.2 ENSRNOG00000060624 ENSRNOT00000086410 2 1 1 105 16 79207069 79207330 CTGAACACTAATGAAAGATGGG 57 79206985 79207003 GAGCCTAGAGATCATCCGA 58 Novel Rattus norvegicus 81 AABR07026503.2 ENSRNOG00000058205 ENSRNOT00000084677 3 1 1 60 16 79480076 79480095 CTTCTCAGCATGGACTAGCA 60 79477528 79477549 TGAGTGGTCTTGTGAGATAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07055162.1 ENSRNOG00000052669 ENSRNOT00000089774 2 1 1 91 7 241063 245330 TAGTTCCTACCGCAACACG 60 240990 241010 GTTGTCTGTTCTCATTCAGCA 59 Novel Rattus norvegicus 81 AABR07068203.2 ENSRNOG00000059293 ENSRNOT00000080391 1 1 1 81 9 90712092 90725540 ACAAACAGATTCTGAGGCA 57 90725585 90725603 CTCGATCTGCAATCAGGAG 58 Novel Rattus norvegicus 81 AABR07006566.1 ENSRNOG00000057279 ENSRNOT00000088105 3 1 1 82 1 240340844 240340865 AATGGAATTCTCAGATGACCAC 59 240340634 240340802 TGCCTCAACGTCTATACCTG 59 Novel Rattus norvegicus 81 AABR07055992.1 ENSRNOG00000053142 ENSRNOT00000083024 2 1 1 81 7 16785507 16848523 GTTGAGTCTGAACATAACTGC 57 16785446 16785464 GTAGTCACCAGTTGCAGAG 58 Novel Rattus norvegicus 81 AABR07056013.2 ENSRNOG00000052125 ENSRNOT00000081869 3 1 1 83 7 18288588 18291530 GCACAAGAACTAGTTTGACAG 58 18288525 18288544 AGTCAGCCTGTAAATCTCCA 59 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000082368 2 1 2 80 7 20867913 20867932 TCATCTGCCTGTAGATGACC 59 20856800 20867871 CCACATTGGCTCACATTCTG 60 Novel Rattus norvegicus 81 AABR07068420.1 ENSRNOG00000058051 ENSRNOT00000079101 2 1 1 88 9 104555222 104559628 TTATGATGGGATGCAATGCT 58 104545410 104545429 GGTCAACCCTTCTTTAATGC 57 Novel Rattus norvegicus 81 AABR07068447.1 ENSRNOG00000055878 ENSRNOT00000085503 3 1 1 92 9 105808062 105808081 AATCATGTCCACAAGATGGC 59 105808136 105826406 TTTCACCCTCGTTTGTCTG 58 Novel Rattus norvegicus 81 AABR07006713.1 ENSRNOG00000060655 ENSRNOT00000084859 2 1 1 66 1 248987700 248987719 CTCTACCTCTCCACAAAGCA 59 249002634 249002652 TTTGTTGTGGTTGATGCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026921.1 ENSRNOG00000053032 ENSRNOT00000083367 1 1 1 87 17 4896678 4920868 CTGACTAATGGAACTTCCCAG 58 4920917 4920935 ATATTCCACTCCGATGGCT 58 Novel Rattus norvegicus 81 AABR07068555.1 ENSRNOG00000055702 ENSRNOT00000091381 1 1 1 80 9 108353762 108405706 ACTATCAGCTCAATGTCTGTG 58 108353702 108353720 TCTGGATCCTTCTCTTGGT 57 Novel Rattus norvegicus 81 AABR07026936.2 ENSRNOG00000053660 ENSRNOT00000084425 2 1 1 81 17 5811319 5812459 CTTAGCAAGACCTATTGAAGCA 59 5811259 5811279 TCCTCATAAGAGTTTCAGGGA 58 Novel Rattus norvegicus 81 AC113773.1 ENSRNOG00000057564 ENSRNOT00000081284 1 1 1 88 1 255127838 255135102 TGGAAACCATTCTAGCCAC 57 255135154 255135172 CAGGAAGTACAATCCGAGC 58 Novel Rattus norvegicus 81 AABR07026984.1 ENSRNOG00000052412 ENSRNOT00000081442 2 1 1 80 17 8438857 8438878 CCAGAATTCATCACTACCTTGC 60 8438917 8440250 CAATCTGACTCACCTTCTCCA 60 Novel Rattus norvegicus 81 AC121740.1 ENSRNOG00000061638 ENSRNOT00000087745 3 1 1 123 1 255418241 255418934 TCTACACAGCCAAGACTGC 60 255419021 255419039 GTCAGAAAGCGAATGGACG 59 Novel Rattus norvegicus 81 AABR07056509.1 ENSRNOG00000054383 ENSRNOT00000085247 3 1 1 147 7 27589983 27590001 CGGGATCGACATCATTCTC 58 27591056 27591074 ACACTGTTCTGCACTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068736.1 ENSRNOG00000061416 ENSRNOT00000091298 3 1 1 61 9 117214068 117257701 TTCTGTCCTTCATGGGTAGTG 60 117257718 117257742 TAGCGATGATATTATCTCATCTGGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07056608.1 ENSRNOG00000057371 ENSRNOT00000083969 2 1 1 80 7 32076228 32082154 ATTAGTGCTGAGGGAAGGA 58 32082197 32082216 TTTCCTTCCATTCCTGAGTG 58 Novel Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 2 1 1 62 7 34176287 34177891 GAGGCATCGTCTAACAAGGA 60 34177916 34177934 GTTTCTGCCAAGTGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072539.4 ENSRNOG00000060029 ENSRNOT00000085586 3 1 1 89 17 15336116 15336499 CAAAGTGAGCTTTGAGCCT 58 15336045 15336064 TATATGGCTCCTGGTGAAGC 59 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000088140 1 1 3 80 8 5160041 5160689 TGATCCAAAGAATGCTAAGCG 59 5159981 5160000 TGGGAGTACTGTACATTGGC 60 Novel Rattus norvegicus 81 AABR07006894.1 ENSRNOG00000051771 ENSRNOT00000091124 3 1 1 126 1 263013808 263013826 GTCCTATGACATCCCTCGG 59 263012465 263013719 TTCCGGTATCTTGTGCTGAG 60 Novel Rattus norvegicus 81 AABR07042802.1 ENSRNOG00000052398 ENSRNOT00000086667 1 1 1 61 19 9567057 9567075 GAAGGAAATCAGCCAACGA 58 9566623 9566641 AAGAACATGGCAGAGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC105485.1 ENSRNOG00000054628 ENSRNOT00000082293 1 1 1 80 1 264940479 264940501 CTGTGTAGAAAGTTCTAGGAGGA 59 264940540 264940696 GCAGAAGATGAAGCCATCTC 59 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081379 2 1 2 81 19 11671477 11786395 GTTTGATGGACCGAAGTGTG 60 11786438 11786457 TCATGACTGACAGCTCTGTC 60 Novel Rattus norvegicus 81 AC105485.2 ENSRNOG00000056655 ENSRNOT00000083963 2 1 1 107 1 264975534 264976517 AGATTGAAGGAGGAGTCCG 59 264975445 264975463 TAAAGGTGTCAGGTGGCTC 59 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 3 2 3 88 17 20998249 20998268 AAAGCTCTCCCTATTTCTGG 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07027347.1 ENSRNOG00000051991 ENSRNOT00000078832 1 1 1 60 17 25568576 25568598 CCACACGATTAACCAGATTACAC 60 25569057 25569076 CTGTAGAGGTGGGTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043035.1 ENSRNOG00000055856 ENSRNOT00000083730 2 1 1 80 19 18431557 18431658 CACAACATCATCTGCTCACAG 60 18431699 18431718 CAGTTGACAGGAGGTATCGT 59 Novel Rattus norvegicus 81 AABR07027381.1 ENSRNOG00000051539 ENSRNOT00000089081 3 1 1 80 17 27218581 27218602 CTCAGAGTGTTTATGACAGCAC 59 27218639 27219543 CTCTTTAATAGCCACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07043075.1 ENSRNOG00000055175 ENSRNOT00000084812 2 1 1 90 19 19229618 19236467 AGAAAGCAGGGTGTTACCA 59 19236521 19236539 ACTTCATTGGCTTCATGGC 59 Novel Rattus norvegicus 81 AABR07069528.1 ENSRNOG00000057789 ENSRNOT00000084237 1 1 1 81 8 27408664 27408685 CCAATAGCTCTTTAAATGTGGG 58 27376952 27408624 GTACACTGCAAAGAAAGAACG 58 Novel Rattus norvegicus 81 AABR07069588.1 ENSRNOG00000054853 ENSRNOT00000089148 1 1 1 80 8 32737964 32741174 GGAGTTAATTCACCCAGTTGG 59 32741215 32741234 TTCAGAAGAGTCCTTGGTCC 59 Novel Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 1 1 1 71 1 274172655 274175035 AAAGGAATGCACATCCTGG 58 274172602 274172620 CAAGTGATGAACAGCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043133.1 ENSRNOG00000055707 ENSRNOT00000091454 2 1 1 80 19 23258353 23262857 AGACTTCATGAATTGGCCTG 58 23258292 23258310 CAGAAGCAGGTAGCTAGGA 58 Novel Rattus norvegicus 81 AABR07057237.1 ENSRNOG00000059128 ENSRNOT00000082384 1 1 1 80 7 62335373 62340582 TTGAGATCTTGACGAAGAAAGC 59 62340622 62340641 GAGCCAACTGTAGCAATCAC 59 Novel Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 2 1 1 60 7 62839118 62839858 TTACTCCAAACAGCCCTCC 59 62839880 62839900 TACGCACTCATAGAGGTAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006978.2 ENSRNOG00000056528 ENSRNOT00000078517 1 1 1 87 1 274935172 274937387 CATCTTTGCATTGGCACAC 58 274937438 274937456 ATGACACTCTGGATCCCAC 59 Novel Rattus norvegicus 81 AABR07057377.1 ENSRNOG00000058185 ENSRNOT00000088850 2 1 1 94 7 68376333 68381647 ATCTCTTGGTTGATCTTCCTG 58 68381701 68381721 AGCTGGTTTCTATCTTTCACC 58 Novel Rattus norvegicus 81 AABR07057377.1 ENSRNOG00000058185 ENSRNOT00000088850 3 1 1 95 7 68376332 68381646 CATCTCTTGGTTGATCTTCCT 58 68381701 68381721 AGCTGGTTTCTATCTTTCACC 58 Novel Rattus norvegicus 81 AABR07043389.1 ENSRNOG00000052109 ENSRNOT00000074264 2 1 1 68 19 27984657 27984675 CCCTGATGACCAACATCCT 59 27984487 27984505 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043445.1 ENSRNOG00000061812 ENSRNOT00000085366 3 1 1 83 19 28558415 28558436 CACGGAACCAGAAATATTTGGT 59 28558479 28563266 TTCTGAGACCTGATGATGCT 59 Novel Rattus norvegicus 81 AABR07043625.1 ENSRNOG00000053062 ENSRNOT00000080396 2 1 1 81 19 32836216 32836236 TTCTCAAGTCCTCTGTCTCTG 59 32836279 32837391 TCTCCAACTGTTGCTCTGG 60 Novel Rattus norvegicus 81 AABR07069840.1 ENSRNOG00000058968 ENSRNOT00000090495 2 1 1 80 8 41156309 41156329 ATGGAGATCACAATTCCTGAG 58 41155964 41156268 TAGGGTGGAAGCATATCCTC 58 Novel Rattus norvegicus 81 AABR07057510.3 ENSRNOG00000061463 ENSRNOT00000082302 3 1 1 82 7 75228804 75248901 TTTCAAAGGAGGCTTTCTTGG 59 75248943 75248963 TCCAAGTAGGTACTCAGACTG 58 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000085269 2 1 3 114 10 23510 23534 GGAGCGACTTTATATCTTCTAAGTC 59 16272 23438 TCCTGTGGCATGATGTCTC 60 Novel Rattus norvegicus 81 AABR07057610.1 ENSRNOG00000053590 ENSRNOT00000080792 1 1 1 86 7 80112827 80112849 GACTAGACTCTACCGTTATAGGA 58 80100029 80112784 CCTATTAAACACCAATTCTGGC 58 Novel Rattus norvegicus 81 AC103227.1 ENSRNOG00000056707 ENSRNOT00000085541 1 1 1 84 2 11195419 11195439 GATAACCAAGCCAGAAGACTG 59 11194533 11195376 AAATAACCTCTGAAAGCAGCAC 60 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 2 1 1 60 10 1581206 1582495 CTGCCTTAGGATTCTTTCTGTG 59 1582514 1582534 TCCCAGAAAGAGTAGAAGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057633.1 ENSRNOG00000053925 ENSRNOT00000080336 2 1 1 80 7 81884324 81884345 AGAAGAACTCAGACATACAAGC 58 81884384 81899744 AGAGTTGCTTCTTCAGAAGAG 58 Novel Rattus norvegicus 81 AC130139.2 ENSRNOG00000058236 ENSRNOT00000083807 3 1 1 70 10 13356860 13356878 CTACACAAACATCCTGGCC 59 13358061 13358079 GGACCAGAGTTAGATCCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.4 ENSRNOG00000056131 ENSRNOT00000078756 3 1 1 80 10 15086011 15086029 GAAGCTCCATGCAGAAGAC 59 15078035 15085970 AAAGTCAGCATTCTCTTTGTCC 59 Novel Rattus norvegicus 81 AABR07070087.1 ENSRNOG00000061855 ENSRNOT00000089529 3 1 1 128 8 51061843 51061862 AGTCTTCCTTCTGAATCCAC 57 51062744 51062762 CTTCCTCCTCTCCATCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040908.1 ENSRNOG00000052691 ENSRNOT00000080798 2 1 1 61 X 113800141 113800161 TGGATACCACATCTGTTTCTC 58 113800929 113800949 CATTTGCTGGTCATACTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.1 ENSRNOG00000053667 ENSRNOT00000084188 1 1 1 60 10 16192349 16192367 GCTGGTTCTATGCTCATGG 58 16191654 16191674 TGTCCAGTAAGTGTCTTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058124.4 ENSRNOG00000056785 ENSRNOT00000080596 2 1 1 80 7 101284594 101308852 AGATCACAGATGCGTTGTC 58 101284532 101284551 TCAAGATCACATCTGCTCCT 59 Novel Rattus norvegicus 81 AABR07029260.1 ENSRNOG00000058259 ENSRNOT00000090851 2 1 1 81 10 18546765 18546783 TGTGGCCTTGCAAATTGAG 59 18546827 18549648 ACAGTTCAGAAGGTTCTGGG 60 Novel Rattus norvegicus 81 AABR07029470.1 ENSRNOG00000057519 ENSRNOT00000085360 1 1 1 142 10 29635877 29635895 AAGCAGAGAACAGATCACC 57 29636001 29773011 TTTCCTTTCAACCACCTGG 58 Novel Rattus norvegicus 81 AABR07029526.1 ENSRNOG00000053102 ENSRNOT00000081031 1 1 1 82 10 32637275 32695138 TGAAGGAGACATAGAAGAACCC 59 32637214 32637235 ACAATGTCCTTAACTTCCACAC 59 Novel Rattus norvegicus 81 AC091481.2 ENSRNOG00000061402 ENSRNOT00000092217 1 1 1 83 7 107865129 107866247 CTCAACTGATACCAAAGATGGC 60 107866291 107866309 GAGACAACCGATGTCAGGT 59 Novel Rattus norvegicus 81 AC091481.2 ENSRNOG00000061402 ENSRNOT00000092217 2 1 1 84 7 107865129 107866247 CTCAACTGATACCAAAGATGGC 60 107866292 107866310 AGAGACAACCGATGTCAGG 59 Novel Rattus norvegicus 81 AABR07007775.1 ENSRNOG00000051888 ENSRNOT00000091950 2 1 1 80 2 27806892 27810669 GGGATTCGTGATCCATCAC 58 27806830 27806848 GGCCTGGAATCTTATTCCC 58 Novel Rattus norvegicus 81 AABR07029573.2 ENSRNOG00000057579 ENSRNOT00000078755 2 1 1 89 10 35210847 35213617 GAACCAACGCTGATCATGAG 59 35210777 35210795 CTCTGCTGGACTCCTTTCC 60 Novel Rattus norvegicus 81 AABR07070246.1 ENSRNOG00000060961 ENSRNOT00000091928 2 1 1 92 8 61435412 61435430 GCTTGAGAAGCACTCATGG 59 61433598 61435356 ATACAAGAGGCTCCAGACC 59 Novel Rattus norvegicus 81 AABR07042440.4 ENSRNOG00000061495 ENSRNOT00000084415 3 1 1 112 X 155803824 155803843 ATCTAGAAGCAGTAGGGTGG 58 155803918 155805014 TTGGACAGAAAGGTCATGC 58 Novel Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 3 1 1 63 20 5317953 5318590 CTTGGGACCTCAAGGAGAG 59 5317908 5317926 ACTCACCTGAGTTCCAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 3 1 1 60 2 32310148 32310170 TCTCATCACCAGACATAAGACAG 60 32310189 32310405 TTTCTTGGCTACAGATGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044569.1 ENSRNOG00000053658 ENSRNOT00000091555 2 1 1 81 20 10681522 10683508 CAAATAAACCGAGGAAGCCA 59 10681460 10681478 CGATTCTCCAAAGGCAAGG 59 Novel Rattus norvegicus 81 AABR07070774.1 ENSRNOG00000055032 ENSRNOT00000088991 1 1 1 73 8 84044434 84044452 AATGCAGCTTCACATCTGG 59 84002084 84002104 GTTGTCACTGTTATCACTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070887.1 ENSRNOG00000060958 ENSRNOT00000085803 3 1 1 81 8 89877771 89881561 CACATACTCATGAGGTTGGA 57 89877709 89877731 GAGGCTCTAATAACTAGTAGACC 57 Novel Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000084250 3 1 2 82 2 43405466 43405485 ATGAGTGCTCTGTAGTTGGG 60 43405530 43406582 CTCTCAGGACCCATCTGAG 59 Novel Rattus norvegicus 81 AABR07008107.1 ENSRNOG00000054714 ENSRNOT00000085763 3 1 1 60 2 43788866 43788884 TCCATGATCCTAAGCAGGA 58 43783148 43783166 TGAGGTCTGCTGAAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071101.2 ENSRNOG00000057868 ENSRNOT00000084793 2 1 1 80 8 100141691 100141709 GACAGGGTCAAATCTGCTC 58 100141752 100143305 TCAGAATTCAACCCAAGGAC 58 Novel Rattus norvegicus 81 AABR07044825.1 ENSRNOG00000057203 ENSRNOT00000089779 1 1 1 60 20 22491982 22492001 CCGGAGTTCTTTACCATTCC 58 22491248 22491962 CCCTTCAGGAGTCTATATTGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044988.3 ENSRNOG00000054791 ENSRNOT00000086519 3 1 1 80 20 30657385 30658345 CCTCCTACAAAGTAACACAGTC 59 30658385 30658404 CTGAGACTCATCTCCAGAGC 59 Novel Rattus norvegicus 81 AABR07071333.1 ENSRNOG00000059817 ENSRNOT00000077590 2 1 1 81 8 109877472 109877490 TCGTCACATCAACCATCAC 58 109876570 109877427 CCTCGGTTATTGTGTCCTC 58 Novel Rattus norvegicus 81 AABR07060153.1 ENSRNOG00000061626 ENSRNOT00000087810 3 1 1 80 4 59288801 59288820 GCAGGAGAAGAGAATTCTCC 58 59288088 59288761 GATAGTGACTTCTGGTTGACTC 58 Novel Rattus norvegicus 81 AABR07060154.1 ENSRNOG00000057552 ENSRNOT00000089567 2 1 1 82 4 59383713 59383735 CAAGTGATGTCAGAAGACTTTCC 60 59383776 59401717 CTTGCCCAACCTGTAAAGTG 60 Novel Rattus norvegicus 81 AABR07008399.1 ENSRNOG00000059278 ENSRNOT00000079629 1 1 1 133 2 56217879 56217897 CTCATGAGGCTTGTTGTCC 59 56196463 56196484 CGTGCTTTGTAATTCTTTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081263 1 1 3 89 2 59872789 59877547 GCCTAAAGGCAAAGACTTTCC 60 59877597 59877616 CTTTCCGGTAGGTAGGAGTC 59 Novel Rattus norvegicus 81 AABR07073453.1 ENSRNOG00000051701 ENSRNOT00000079538 3 1 1 101 8 119372025 119376810 CTCAGACAGGACCGAAGAG 59 119376875 119376893 GTGAGAATGCTGTGACCCT 60 Novel Rattus norvegicus 81 AABR07008597.1 ENSRNOG00000053100 ENSRNOT00000085017 1 1 1 82 2 66285635 66304339 CACTGACTTATGGGACAGCA 60 66285572 66285590 GACTTCAGAGTCTGCCCTG 60 Novel Rattus norvegicus 81 AC241722.1 ENSRNOG00000053975 ENSRNOT00000085523 1 1 1 99 Y 1949498 1949516 ATTTCTTGGCAGCATTGTG 57 2027158 2027178 GGTATTCTCCAGCAATGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043877.1 ENSRNOG00000053551 ENSRNOT00000091533 2 1 1 60 19 45503974 45503994 CACTGAAGGATCTCCAAAGTC 59 45507268 45507288 GAATCCATCAATAACCGTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 1 1 1 87 8 124166779 124166974 TTTGGTCCTGCATCCTCAG 60 124167025 124167043 GATCACTTACCCAGCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071745.1 ENSRNOG00000059812 ENSRNOT00000085862 2 1 1 73 8 128885475 128885494 AATGGATGAATGGATGCGTG 59 128884848 128884868 GAAGGACAAATAAGGGTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 3 1 1 71 7 137542338 137543393 CACACTGTACTTCAACAAGAC 57 137543426 137543444 TAGAAAGACGAGCCAACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009161.1 ENSRNOG00000056029 ENSRNOT00000079699 2 1 1 80 2 87896705 87898083 AAACTTCTCCATTGGTGTTGC 60 87896645 87896663 ACAATAGCTCCTGGTCCAC 59 Novel Rattus norvegicus 81 AABR07058816.1 ENSRNOG00000061549 ENSRNOT00000088445 1 1 1 131 7 138437928 138437946 ATGAAACAGAGATGCCGCT 60 138438041 138449696 ATTGGCAGCTCCTGATCAG 60 Novel Rattus norvegicus 81 AC103129.4 ENSRNOG00000057792 ENSRNOT00000090952 1 1 1 109 7 140075934 140075953 GCTTTGGATATCCAGAACCC 58 140073694 140075862 TTCTGCACAAATGCTGGTG 59 Novel Rattus norvegicus 81 AABR07009599.2 ENSRNOG00000059333 ENSRNOT00000083809 2 1 1 84 2 105283114 105283133 GAGTGGACTCTGATTCCCAG 60 105282136 105282154 CACTTAGCTCTTGCATGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009634.2 ENSRNOG00000052903 ENSRNOT00000091882 3 1 1 102 2 106593240 106593261 CTGGAATTGCATAACTACAAGG 58 106660534 106660554 TCCACTTGACAAGATGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010040.2 ENSRNOG00000055732 ENSRNOT00000084029 1 1 1 80 2 121855427 121855445 CAGGAGTCTTGTCTCACGA 59 121842694 121855385 TTCTTTCTGCTGTTTCTCAGC 59 Novel Rattus norvegicus 81 AABR07010609.2 ENSRNOG00000058331 ENSRNOT00000077599 2 1 1 80 2 143347763 143357455 GAAGAAAGAGTCCCTATCATGGA 60 143347705 143347725 CTGAGAGGTGACATGATTTCC 59 Novel Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 1 1 1 72 2 149090389 149090407 AGACATCAAGGCTGGAGAG 59 149090442 149096508 TGAATGACATCCAAACTGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC111231.3 ENSRNOG00000060025 ENSRNOT00000084370 1 1 1 90 2 150217708 150217726 CTGACTATTTCCGTAGCCC 57 150215282 150217654 AGTCCTTCACAGTGATGGT 58 Novel Rattus norvegicus 81 AABR07011013.1 ENSRNOG00000054340 ENSRNOT00000087243 2 1 1 82 2 156674899 156674919 GAAGATGCCTTGGATGATCAG 59 156623236 156674855 ACCTTGTCTGACCAACCTC 59 Novel Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 2 1 1 61 2 173565575 173565594 TGTGTTCTGGTAGCTCAGTC 60 173565618 173568522 TTTGACAGTGCTGTAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012047.1 ENSRNOG00000061118 ENSRNOT00000078941 1 1 1 101 2 183810042 183810743 ACCCGAAGATTCTGGTCTG 59 183809959 183809980 ACACTGTGGTTCTTTATCTCGA 60 Novel Rattus norvegicus 81 AABR07072759.2 ENSRNOG00000055468 ENSRNOT00000090513 3 1 1 60 2 193771846 193771865 ACTACCTTCCTGTCACAGTG 59 193769192 193769210 ATCAGCAATTCGTTCCTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012475.2 ENSRNOG00000052421 ENSRNOT00000079148 2 1 1 278 2 196587247 196587266 GAAGCTCCATATTGCTTCCG 59 196588349 196588367 AGCAATCTCTGCAGAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014125.2 ENSRNOG00000059179 ENSRNOT00000084593 2 1 1 80 14 1511011 1511647 GGGACCTGAAATAAATATGGAGTC 59 1510954 1510972 ATCCATTTGCCATTGCCAG 59 Novel Rattus norvegicus 81 AABR07014125.1 ENSRNOG00000054857 ENSRNOT00000081396 1 1 1 80 14 1519387 1519408 CAGAACAAGCTAGAGAAACACC 59 1518050 1519349 TTGAAAGCGTCTCTTGAAAGTG 60 Novel Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 3 1 1 61 14 3792324 3792942 TAACACTTGAGCAACGGGA 59 3792966 3792985 CTCCGCAACATATAAGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014317.1 ENSRNOG00000053286 ENSRNOT00000080564 3 1 1 126 14 9101543 9101562 TTTAAGCACTCGCTTCTGTC 59 9100314 9101455 TAATCTGTCGTTCTTGGCAG 58 Novel Rattus norvegicus 81 AABR07014350.1 ENSRNOG00000057070 ENSRNOT00000085549 2 1 1 60 14 10957271 10957291 CGTTTACGGTGAAATCAAAGC 59 10958161 10958179 ATAATTTCCAGGTGCGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014350.1 ENSRNOG00000057070 ENSRNOT00000085549 3 1 1 60 14 10957275 10957295 TACGGTGAAATCAAAGCAACC 60 10958164 10958183 TGTCATAATTTCCAGGTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 2 1 1 98 14 24842984 24877877 AGTACTACATGTGCCCAGG 59 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012762.1 ENSRNOG00000055862 ENSRNOT00000087719 3 1 1 91 2 206753177 206777986 TTCGTTCCTGACACAGGAC 60 206753104 206753123 GTCTCTGTGTAAACGTTGCC 60 Novel Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 2 2 2 82 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647893 211647913 TTTAACTGCTTCATGCCTGTC 59 Novel Rattus norvegicus 81 AABR07013488.2 ENSRNOG00000057646 ENSRNOT00000080711 3 1 1 89 2 239579751 239579771 TGCACTTAAGGTTTCTGAACC 59 239579822 239598228 TCTCATTCCTCCTCACCTG 58 Novel Rattus norvegicus 81 AC140765.1 ENSRNOG00000053373 ENSRNOT00000087201 3 1 1 82 2 243798837 243798855 AGAGATGTGTTTGATGCCA 57 243778121 243798791 TTCTCTTTGTCAGTGCCTC 57 Novel Rattus norvegicus 81 AABR07013689.1 ENSRNOG00000054579 ENSRNOT00000080436 2 1 1 101 2 250459597 250459615 TGACTTGGAAGGAAGGCAG 60 250459674 250465080 GAATATAACTCCTCCCTTTCTTCTG 59 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 2 1 1 79 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35955758 35955779 ATTAGAGCATGAGAGCTTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 2 2 2 88 X 22399683 22399827 TACGGAGACTAGAGGTCCG 60 22399613 22399632 GTATCGTCTGGAGAGGATGC 60 Novel Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 3 1 1 61 19 28044382 28044400 CCTGAGGTTTCTGACAGAG 57 28041820 28041841 AATATGGATTTGGCCTGAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000014713 1 2 4 80 3 140156485 140156503 AACTGGAATGTTGCCAAGC 59 140156547 140159503 ATTCAGAGGTGTGCATGGA 59 Novel Rattus norvegicus 81 AABR07012295.1 ENSRNOG00000052006 ENSRNOT00000071718 1 1 1 267 2 192343229 192343247 TGTGTCTTCCTGCTGTAGC 60 192342979 192342997 AGCAATCTCCAGACTGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 1 1 1 72 3 76976095 76976113 GGGACTAACACAGAATCCC 57 76976145 76976168 GACAGTAATGATGTAGGTGATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044267 ENSRNOT00000069534 3 1 1 60 4 8007761 8007782 TCAGCATTTACTTCTCTGACCT 59 8007802 8007821 TTTGAGTACTAACCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094605.2 ENSRNOG00000054953 ENSRNOT00000080650 2 1 1 83 18 30418276 30418296 CAGAGCTACCAGTATGAGGTG 60 30418336 30418360 GACACTATTGGGAATGATGTTCAG 60 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 1 2 2 80 14 83884380 83885384 AAAGTGAACTACGTCCCGT 59 83884318 83884336 GGAGTAGCAGAAGGAAGGT 58 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 2 2 4 88 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77749597 77902221 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 3 2 4 88 5 77902272 77902290 GTAAATGGAGAGTGCAGGG 58 77749598 77902221 GTATTCCCTCCGTCATACTC 57 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 2 2 2 86 7 142860724 142861285 GGATGTTAGCACATGACCA 58 142860656 142860674 AATTCCTTCACTGCTGACC 58 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 3 2 2 86 4 114818608 114818768 TATGAACTCTGGTGGTTCTG 57 114818541 114818559 GAGTTTAGCTCTTCGGTGG 58 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 2 1 1 70 2 221659319 221659337 TAAGGTGTTCCTTGGAGCC 59 221659372 221659390 TGAGTTCTCGAGTCTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065291.1 ENSRNOG00000049801 ENSRNOT00000073939 2 1 1 87 6 119627446 119627467 TGAAGGACTTCAAGAAAGACAC 59 119627511 119627538 CTGTCTATGTCTCTATCTTCTGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000059719 ENSRNOT00000083762 3 1 1 60 10 97019617 97019636 AGCATGCCTTCTTGATAGGA 59 97019654 97019677 GAGTTCAGCTACAGTATACATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060076 ENSRNOT00000083370 3 1 1 61 14 50367833 50367851 CTTGAGACCAGGAGTTCTG 57 50367874 50367894 CAAACTTAATGTGGACACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0746.3 ENSRNOG00000051300 ENSRNOT00000076663 1 1 1 60 X 73758136 73758154 AAAGCTCTGTAAAGCCCGT 60 73758094 73758115 ATGTTCAAAGACTTAAGGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059778.1 ENSRNOG00000061072 ENSRNOT00000086248 2 1 1 90 4 34962368 34962386 TAAACAGGTGAAAGCCAGG 58 34962439 34962462 TTGCATTCGGTCTTCTAGAG 58 Novel Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 1 1 1 60 8 42786935 42786953 CCCTCTTCCTTCTGTTCCT 58 42786980 42786998 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 3 1 1 95 1 142027712 142027731 GTAGTGATCAATGTCAGCCC 59 142027791 142027809 CTCAACACTCCAGGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000085393 2 1 4 141 X 73460904 73460928 CCTGAAGAAATAGTTGGAGATACAC 59 73464157 73467012 CCAAGTCCATCAAACCAGC 59 Novel Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 3 1 1 65 5 124275960 124275978 ACTTCACCTCATCCCACAG 59 124276011 124276030 AACACTCTGTTCCCTCTTCG 60 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000080528 3 1 4 84 9 81645199 81645217 AAGTACAAAGACGACCTGG 57 81645264 81645679 GTTGAGGTAGCTTGTCTAGG 58 Novel Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000071700 2 1 4 81 9 81650541 81650559 AAAGAGTCCAGGTAGGCTC 58 81650604 81650878 GGAGGCTCAATCACATCCT 59 Novel Rattus norvegicus 81 AABR07045405.1 ENSRNOG00000059487 ENSRNOT00000077765 3 1 1 124 20 46519520 46519552 CTGTTAACCATGCAGAGGTC 59 46519639 46519657 CTTCTAGGAAGATCGGCGT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051646 ENSRNOT00000084279 1 1 1 60 15 39604341 39604363 GGAACGATACAGAGAAGATTAGC 59 39604303 39604323 AGTTAGGTACTCTGCACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061207 ENSRNOT00000078711 1 1 1 60 X 102150565 102150583 CTCAGTGGAAGAGGACGAC 60 102150605 102150625 TATGCCTTTGACCAAAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052996 ENSRNOT00000091162 1 1 1 60 13 113621776 113621794 GGTGCAGTAGTAGCTTCGT 60 113621818 113621836 CACAAATCCCTTGAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 2 1 1 65 4 164253017 164253035 TAAGGAGACTCAAAGGCCC 59 164250685 164250703 GTAGCAATCACAGTGAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 2 1 1 86 9 110055970 110055989 GGGCTAAAGGGAAATTTGGA 58 110055902 110055921 GTGTCAGAAAGGGAAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 2 1 1 77 2 26870118 26870136 CCACCTGTGGTCTTAAGGG 60 26869963 26869981 CTTGTTACCACCTCCAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 1 2 2 80 20 4543421 4543595 AGACCATGAGACAGAACTTCTG 60 4543362 4543382 TTGATGTTCATTCTGTTCCCG 59 Novel Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 1 1 1 82 14 31058214 31058235 CTTCAGAATTTCAAGAAGTCCG 58 31003006 31003025 GCACAACATGTAGCTATGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 1 1 1 60 18 4600342 4600364 GTGAGGAGAGTAATATCGAAGAC 58 4606762 4606780 CCTCCATATCAGGAAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 2 2 2 80 14 32869829 32869849 ATTCTCAGGTTCATCCAAACG 59 32856122 32869790 AGTATAAGAAGGCTCTGTCCAC 59 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 2 1 1 88 5 38572313 38572333 ACTTACACAGTGAACTACTGG 57 38567803 38567821 CCATTGTTCCATCCCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 1 1 1 60 14 103887430 103887450 TTTCTCCTCTGGATCCTTCAG 59 103887142 103887162 GAGCCAAGGATATTCAAACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 1 1 1 60 5 111966003 111966022 TACGAAGTACTGAGGATGGT 58 111978191 111978209 GCTCACAAGTTGTCTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 3 1 1 76 11 7581426 7581445 TGAAGAGTCTACAAAGGCTG 57 7582452 7582472 TCCATGGTTATTTGTGCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776 1 1 2 117 5 132691745 132700512 GAATCCAGGCATAAATGTTGTG 58 132706065 132706084 ACTTGGGTCATTCCTTTGAC 58 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336 1 1 3 83 1 47513716 47513735 CTTTGTCCAAAGCTGGACAG 60 47513781 47534077 CGTGAACACCTCTGTTCCT 60 Novel Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 1 1 1 113 6 10767023 10767041 CTTCTTCCTCATCAGGGCC 60 10765954 10765975 CCTTGGTTTGTTGAATACAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 3 1 1 114 6 10767024 10767042 ACTTCTTCCTCATCAGGGC 59 10765954 10765975 CCTTGGTTTGTTGAATACAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 1 1 1 60 6 36846739 36846757 CACAAACAGCACTGTTGAC 58 36855893 36855911 TTAAATGTCGCAGGACCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 2 1 1 60 6 39679935 39679953 GCATCTAGAAGAGCTGTGC 58 39692692 39692710 TCCTTCAGAATGGCATGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 3 1 1 63 1 70055248 70055267 TTCCAGAAGAACCAGAGGAG 59 70071746 70071764 TGGAATCAGGGATGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000083718 1 1 2 123 3 4734109 4734221 AGTCTACCATGCTGATGGG 59 4734773 4734791 TACTGAGGAGTGGGTTCTG 58 Novel Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 3 1 1 74 15 105203079 105203097 ATTCTACCACATGGAGCCA 58 105205029 105205047 AATCTTCAGCCTTGCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 2 1 1 70 13 24520513 24520532 TAATTCACCACCATCTCCAG 57 24516756 24516776 AGGATTCCATTCATCTTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 2 1 1 60 1 97133652 97133670 AGGCTTGGGAGTATGTGAC 59 97134919 97134938 GCTGATCTTGGGATATGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 3 1 1 60 1 97133651 97133670 AAGGCTTGGGAGTATGTGAC 60 97134917 97134937 CTGATCTTGGGATATGCACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 2 1 1 61 6 117418997 117419018 ACTTATTGTCTTGTGTAGCCAC 59 117418160 117418178 CAGTCTTCCCACTTTCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 2 1 1 60 13 69628273 69628292 CAAACGGTGCTCTGTTACTG 60 69628520 69628540 TTATTGCAACAGATGCTGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 1 1 1 60 11 83377004 83377022 TCATGGAAGTTGGTCGGTC 60 83375959 83375977 GTGTGGATGAGCAGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 3 1 1 61 13 104140340 104140361 GAAGAAATAACCCAGCTTTCAC 58 104140519 104140537 GTTGGAAAGCACCAAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 1 1 1 101 1 134951711 134951731 ACTGAAGTTTCCAATCTGGAG 58 134951459 134951477 AAACAAGTGCCTGGAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 1 1 1 61 3 130601350 130601368 ATTTGCCAAAGTGTTTGGG 57 130594878 130594898 GCTTATTCTCATTCTCCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 3 1 1 80 12 33212914 33212932 AGAAGATGACGACCTCGTG 59 33209996 33210014 GTCTCTGGATAGCTCGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 2 1 1 60 9 49134057 49134078 CAGGATCATGAAGGAAATCTGG 59 49135004 49135025 ACCAAAGATTAAGACTGTCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 1 2 2 94 3 154850624 154850642 ATTACAGCTTCTGCAGCAG 58 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 3 1 1 60 13 108021464 108021484 CATGGTATACAGTTCCCTCCC 60 108032596 108032618 CGACATATTCACATAATCCTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151 2 1 2 80 3 177390199 177392104 AGTACCATTGCACCTGAGG 59 177392148 177392166 CACCAGGTCCTGACTTCAG 60 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 1 1 2 91 X 149274240 149274258 AAGAAGTGCTGGCTCAGAG 60 149279814 149279833 GTACTGCTGGAAAGAGTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 2 1 1 60 2 32636212 32636232 CTGGAAGCAGAATTATCTGGA 58 32632999 32633019 TTGAAACATAGCCGTAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 2 2 2 80 4 5722469 5723891 CTACCAAGTGGCCTATACG 57 5722407 5722426 ACTTAAAGACCACCTGTTCC 58 Novel Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383 3 1 2 82 4 5724001 5734565 CATTATTCCGTCATGTATTGCC 58 5723940 5723959 CATCAACTCCTCTCAACACC 58 Novel Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665 3 1 2 92 4 68426293 68426311 CACATCCTTCCAGATGGCT 60 68426367 68451420 CTGCACTGCTTCATAGGTG 59 Novel Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308 2 1 2 81 20 45681162 45681181 TAACAGGTCACAGGAAAGCA 59 45681225 45683141 TGTCCATGACCTGTCTCTG 59 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 2 1 1 92 2 65011789 65011807 AAATCAGCACTCACTGACG 58 65010645 65010665 GTTCTCCATAGAAAGTGTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 1 1 1 78 2 68819544 68819562 TTTGGAACCTACCTCAGGG 59 68820157 68820180 CCCTGGAGTTTAATCTTACTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 3 1 2 83 7 131431131 131431149 AAGTCTGCTGAGACATGGG 59 131375147 131431086 GGAAGATGTCAGAGGTCTCAG 60 Novel Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 2 1 1 70 2 155301989 155302009 GTGTTGGTTGTAGCTTCAGTC 60 155303723 155303741 AAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 3 1 1 72 2 184916847 184916865 TCCTACACCTGCAAGATGG 59 184916558 184916578 GACCAAATATTTGAGCCAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 1 2 2 92 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040925 204040943 CTTCATCCAATGCAGAGGC 59 Novel Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 3 2 2 84 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647895 211647915 TGTTTAACTGCTTCATGCCTG 60 Novel Rattus norvegicus 81 Mt-atp8 ENSRNOG00000033299 ENSRNOT00000046201 2 1 1 103 MT 7848 7866 CAAACCTTTCCTGCACCTC 59 7930 7951 GGTAATGAAAGAGGCAAATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-cytb ENSRNOG00000031766 ENSRNOT00000042098 2 1 1 60 MT 14636 14657 CTTCTCAGTAGACAAAGCAACC 59 14677 14696 GAATGGGAGGATGAAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per3 ENSRNOG00000018413 ENSRNOT00000024932 2 1 1 80 5 168120271 168121446 CATACTTCCAAGAACACAGATACC 59 168120214 168120232 AGCCTGTTCAGAAATGTGC 59 NA Rattus norvegicus 81 AABR07040792.1 ENSRNOG00000037611 ENSRNOT00000043861 1 1 1 60 X 110342876 110342895 AGTGGTGAGAGCCATTACTG 60 110342916 110342936 CTCAACATCAGGCCATATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnma5 ENSRNOG00000058423 ENSRNOT00000085250 2 1 1 60 X 153038820 153038838 TGGTTAGAGGAGGTCACTG 58 153038778 153038797 GCTTCTTCTCACTCTCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dad1 ENSRNOG00000009090 ENSRNOT00000012233 2 1 1 104 15 32887758 32887776 GTTCGGCTACTGTCTCCTC 60 32876287 32887691 TGTATTCTCAAGCAAACCGC 59 NA Rattus norvegicus 81 RGD1560334 ENSRNOG00000003860 ENSRNOT00000005120 3 1 1 60 X 43832387 43832405 CTCAGACACGTTCTGACCA 59 43832427 43832447 AAACAGTCTCTACCTCTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000079802,ENSRNOT00000078824 3 2 5 61 X 22247179 22247197 GTCCAGACTCATGGAACCC 60 22249060 22249079 GGTGTAGAGTATGAGACGCT 59 NA DesignNoJunction Rattus norvegicus 81 Cldn19 ENSRNOG00000007922 ENSRNOT00000047151 1 1 1 80 5 138302976 138302994 ACTGCTGTCTCATGGTACG 60 138303036 138304555 AAATTCATACCTGGCGTTGAC 59 NA Rattus norvegicus 81 Tbcel ENSRNOG00000032364 ENSRNOT00000059951 1 1 1 80 8 46722117 46723474 AGGAGTTGCCAGATTTGGA 59 46722055 46722075 AATGACAGCAAACAGAAGGAC 59 NA Rattus norvegicus 81 Chchd7 ENSRNOG00000031769 ENSRNOT00000047889 3 1 1 80 5 16845677 16847035 GCTTATCGGAATCTGATGCT 58 16847076 16847096 TCAAGAAGTAACTGGAACACC 58 NA Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 1 2 2 80 2 143586944 143589976 TTACCAACTAATTGCCGACC 58 143590016 143590037 CCTTCTTCAAAGTAGCTCATCC 59 NA Rattus norvegicus 81 Gsta2 ENSRNOG00000029861 ENSRNOT00000032185 3 1 1 80 8 85644683 85644703 GAGCCATTCTCAACTACATCG 59 85642791 85644643 AATACATGTCAATCAGGGCTC 58 NA Rattus norvegicus 81 LOC102550734 ENSRNOG00000030296 ENSRNOT00000042885 3 1 1 60 8 104155489 104155508 AAGCGTAATGAGGATGAGGA 59 104155448 104155466 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc1b ENSRNOG00000010701 ENSRNOT00000014270 1 1 1 80 2 40007387 40007406 TTATCGAGGACATCAAGGGA 58 40007448 40036616 GTGAGGAAGGAGGAAATCTG 58 NA Rattus norvegicus 81 Fgf9 ENSRNOG00000011471 ENSRNOT00000015367 2 1 1 82 15 38342017 38342041 CTGGATTTCACTTAGAAATCTTCCC 60 38342079 38352258 AAATTCCAGAATGCCGAATCG 60 NA Rattus norvegicus 81 Sclt1 ENSRNOG00000014139 ENSRNOT00000019256 3 1 1 80 2 128602984 128603003 AGTTGCAGTAACGAAAGTGG 59 128599176 128602944 ATATCTTCCTCCTTCTTCAGCA 59 NA Rattus norvegicus 81 Limd1 ENSRNOG00000004837 ENSRNOT00000006554 1 1 1 80 8 132589806 132595138 CTGATTATGGACATGATCCTACAG 59 132595177 132595195 ACACTCATTGCAGATGACG 58 NA Rattus norvegicus 81 Mir3597-1 ENSRNOG00000035551 ENSRNOT00000053674 1 1 1 60 2 187582840 187582861 TAGCTTTATGAAGACTCCACAC 58 187582801 187582820 GGGTTGGTTGTTATCTTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adpgk ENSRNOG00000026178 ENSRNOT00000013022 2 1 1 81 8 64114098 64114117 ACTGGTATTCCAGTTCACCT 58 64114161 64115240 GAAAGACCTGCTGATGCAC 59 NA Rattus norvegicus 81 Bhlhb9 ENSRNOG00000003191 ENSRNOT00000049375 2 1 1 60 X 106391308 106391326 AGCCACAAGTCTAGGTCAG 59 106391347 106391368 ACCAGTTCCCTATAACATTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1194 ENSRNOG00000045972 ENSRNOT00000048448 3 1 1 60 8 40192598 40192618 TGCTACTCCTCTGTCATTACC 59 40192558 40192576 TGAGGTTTCTTTGGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps20 ENSRNOG00000008555 ENSRNOT00000011314 2 1 1 80 5 16706257 16706550 TGCCTACCAAGACACTGAG 59 16706195 16706213 TCATCTGGAAACGATCCCA 58 NA Rattus norvegicus 81 RGD1560997 ENSRNOG00000032132 ENSRNOT00000051805 2 1 1 60 X 37026761 37026780 ATGTCCTTCTGATGAACGTG 58 37026802 37026821 GTAATGCCTGTCAAAGTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd20 ENSRNOG00000000517 ENSRNOT00000000624 1 1 1 80 20 6214745 6215954 ATGTTGGGAAGGATGTTTGG 59 6215996 6216015 TTCTGCGATCTCGTACTCTC 59 NA Rattus norvegicus 81 Pacsin1 ENSRNOG00000054603 ENSRNOT00000090820 2 1 1 80 20 7282816 7282950 AACAGCAGAAGAAAGTGGC 59 7283010 7283029 GCACCTTCTCATACTTCTCC 58 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000061047 2 1 2 98 11 36880190 36911836 ATCAGGAGATAATGATGGGCAG 60 36911895 36911913 TGAGACTGAATGGCCACAG 60 NA Rattus norvegicus 81 Olr202 ENSRNOG00000025819 ENSRNOT00000035798 2 1 1 60 1 170185855 170185876 TTAACATTTGGTACGGCTTCTC 59 170185816 170185834 ATGAGGATCACATCCACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 2 2 2 85 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356884 6357488 GTGATAGAAATCTGTTAGGCTGG 59 NA Rattus norvegicus 81 LOC102555453 ENSRNOG00000028993 ENSRNOT00000042736 1 1 1 60 X 1345842 1345860 GAGATTGTCAACATTGCCC 57 1345800 1345818 TTCCAGAAAGTTCTCTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr105 ENSRNOG00000015885 ENSRNOT00000021264 3 1 1 60 1 168600451 168600470 CTGTGCTAATTCTCCTCTCC 58 168600410 168600429 TTAGAAGCAATGCTCAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1246 ENSRNOG00000049805 ENSRNOT00000073541 1 1 1 60 8 42339179 42339199 TTATGTACCTAAAGCCCTCCT 58 42339220 42339239 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006267.1 ENSRNOG00000050024 ENSRNOT00000072135 3 1 1 80 1 227600546 227602340 AAAGGTTTGGTTCGAAGCAG 59 227602379 227602401 CAGTGAGTTGATTATCATCCCTG 59 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 1 2 2 80 5 139890711 139891663 TTTCCAGAAAGGCTGTAGGT 59 139890650 139890670 GCTCTGGAAATAGGTTCAGGT 60 NA Rattus norvegicus 81 AABR07054514.1 ENSRNOG00000052231 ENSRNOT00000071502 3 1 1 60 3 158847541 158847560 CATTCTCACATCAATGGCCT 58 158847580 158847601 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc32 ENSRNOG00000010472 ENSRNOT00000013963 1 1 1 80 3 110821158 110821176 GGATCGATTCCTCCAGGAG 59 110818208 110821115 AAATGTTCCAAGGTGCTCTC 59 NA Rattus norvegicus 81 Spata13 ENSRNOG00000013707 ENSRNOT00000018407 2 1 1 80 15 41048588 41050458 CCATCAATGAGCTCATCAGC 59 41050501 41050519 GTTCCTGGTCATCCATGGT 59 NA Rattus norvegicus 81 Paqr9 ENSRNOG00000032374 ENSRNOT00000049729 2 1 1 60 8 103338535 103338554 CAGCTCTTCCACATCTTCAC 59 103338577 103338595 CCTCTTCCACGTAGTACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 1 3 3 81 1 178388930 178390104 GCTGATTGATTCCTTAGAATGG 57 178390146 178390164 TGTATTAGGTCTGTCGCCT 58 NA Rattus norvegicus 81 Rn60_17_0793.1 ENSRNOG00000051034 ENSRNOT00000076151 1 1 1 60 17 77568432 77568452 GTTCATGACATGATCCGTGAG 59 77568471 77568492 TTGGAAGAGGTTGTCTACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911107 ENSRNOG00000048576 ENSRNOT00000074842 3 1 1 80 17 32076045 32076064 TCCGCTACTCTAGCTATGGT 60 32073233 32076004 TTTGCTCAAATGAGATGCCTG 60 NA Rattus norvegicus 81 Paip2l1 ENSRNOG00000048424 ENSRNOT00000071314 2 1 1 60 1 193700442 193700461 TGAATGGTTTATTCCAGCCC 58 193700401 193700421 AAACTGGTCTTGGATTTGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paip2l1 ENSRNOG00000048424 ENSRNOT00000071314 3 1 1 60 1 193700561 193700579 CAGAGTACATGTGGACGGA 59 193700519 193700542 CACAACTCCTCTTCTATTTGTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf2bp1 ENSRNOG00000014252 ENSRNOT00000019075 1 1 1 60 1 79913113 79913131 GGCGGTCCATACTCTACAG 59 79913152 79913173 CATTCTTAAGGGCAGCAATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt10c ENSRNOG00000039567 ENSRNOT00000002198 1 1 1 83 11 47047378 47049854 CGCTTTAAAGTGGTTCCTCAC 60 47049899 47049917 ATGGCACCAGATATCTGGC 60 NA InUTR Rattus norvegicus 81 Tgif2lx2 ENSRNOG00000029850 ENSRNOT00000045685 3 1 1 60 X 90588339 90588357 AAAGCTGTCCAAGAAGACC 58 90588379 90588399 GGCATTTGTAAACCAGTTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000031935,ENSRNOT00000079850 3 2 2 80 17 10152162 10152332 GAGATTGAGAGTGACAGCCT 59 10152373 10152393 ATCATCAGACGTCAGAGTCAG 59 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 2 2 2 80 X 13277355 13278851 GGATGCTGAAACTGTATGCC 59 13277294 13277315 GAAACACAAATCCAGAAATGCC 59 NA Rattus norvegicus 81 Mtfp1 ENSRNOG00000004640 ENSRNOT00000006160 1 1 1 80 14 84332538 84332556 GAATGTCCGCAAATGGACC 60 84331015 84332494 TCTACCGACCTGTCAATGG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 1 1 3 104 2 189440050 189440213 TAAACTCAAGGAGGCGGAG 59 189449999 189450017 TCTTTGGTGCACTTCAGCT 60 NA Rattus norvegicus 81 Rgs9bp ENSRNOG00000012877 ENSRNOT00000017172 2 1 1 63 1 91855900 91855918 CTTAGTGCTTACTGTGGGC 58 91855855 91855873 GGTCTTCTGCAGTTCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688924 ENSRNOG00000037485 ENSRNOT00000056742 2 1 1 138 1 89150254 89150573 CTGTTCTCCCTGAAGACCC 59 89150673 89150693 CTAAAGAGATAGAGCTGGCCA 59 NA Rattus norvegicus 81 Rpia ENSRNOG00000005576 ENSRNOT00000007927 2 1 1 85 4 98585712 98587264 AGCGAATAGCTGAAAGAGTG 58 98579141 98579159 CTGTAGGATAAGCTGCCTG 57 NA Rattus norvegicus 81 Kcna7 ENSRNOG00000020779 ENSRNOT00000028189 3 1 1 178 1 101398795 101398813 GTCATCCTGGTCTCCATCG 60 101400855 101400874 AAGAATGGATCGTTGAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp575 ENSRNOG00000024065 ENSRNOT00000035356 2 1 1 146 1 81448681 81449207 GGAGACCAAAGTCTCCCAC 60 81448553 81448571 TTGGATGGGTACGAGAAGG 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000061814,ENSRNOT00000086167 1 3 3 80 13 25983854 25983873 TGGTCTGACCTTTCAGTCAC 60 25983914 25990224 GAACTCCTTTGGAAGCTTCAG 59 NA Rattus norvegicus 81 Gnb2l1 ENSRNOG00000049070 ENSRNOT00000072179 3 1 1 60 12 35906228 35906246 CCGCCTCTCGAGATAAGAC 60 35906186 35906205 CCATAGTTGGTCTCATCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mei4 ENSRNOG00000023794 ENSRNOT00000037530 1 1 1 80 8 89487394 89555181 CATCGATCAGGATCAAAGCA 58 89555223 89555242 AGAAGTTGTTCCAGGATCCA 59 NA Rattus norvegicus 81 Oosp1 ENSRNOG00000020998 ENSRNOT00000028498 2 1 1 82 1 228033092 228050081 TTCTGCACAGTCGGTATCC 60 228033028 228033047 ATCTACTGCCCATTCAGGAG 59 NA Rattus norvegicus 81 Ntrk1 ENSRNOG00000013953 ENSRNOT00000018961 3 1 1 80 2 187149022 187149040 TGCCTTTATGGACAACCCT 59 187148435 187148610 GTGCTGTTAGTGTCCACTG 59 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 2 1 2 80 6 96165190 96165571 CTCGGTCTACAGAATGACC 57 96153213 96153233 CTATTCTTCAGACAGGGATCG 58 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190,ENSRNOT00000010546 1 2 2 82 6 96165617 96165635 TAACAAGGAGATGCTGTGC 58 96165190 96165571 GGTCATTCTGTAGACCGAG 57 NA Rattus norvegicus 81 Rn60_7_0942.1 ENSRNOG00000026659 ENSRNOT00000031629 2 1 1 60 7 93517535 93517553 TTGTTCCAGCTAATCGGAC 58 93517575 93517595 TCACCAATGTAACCTTGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nos3 ENSRNOG00000009348 ENSRNOT00000013058 2 1 1 80 4 7323139 7323779 ACATTGAGATCAAAGGACTGC 59 7323079 7323098 GGTAGAGATGGTCCAGTTGG 60 NA Rattus norvegicus 81 Rn60_X_0594.5 ENSRNOG00000003345 ENSRNOT00000004460 2 1 1 60 X 58565774 58565793 ATGGAATGTCCTTAATGCCC 58 58565733 58565751 ATACACAAAGCGACCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoc4 ENSRNOG00000018405 ENSRNOT00000024832 1 1 1 88 1 80596246 80599418 GCTTTGTAGCATCCATGCC 60 80596176 80596194 CATCACCCTGGCTCTTACC 60 NA Rattus norvegicus 81 AC126148.3 ENSRNOG00000060849 ENSRNOT00000083585 1 1 1 80 1 222521073 222521181 ACATTGAACAGGCACTTGG 59 222521223 222521243 GAGTGAAGTTGGCTAGATCAG 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000074299 3 1 5 80 1 87904341 87904359 CCATTCCCACAGGAATCTG 58 87904400 87906078 TTCATATTGGCAAGACTCAGTG 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000083779 1 2 3 87 5 22764941 22769803 AGATAAAGAGGCAAAGCACG 59 22764873 22764891 AATGACCATGAACCACGTG 59 NA Rattus norvegicus 81 Magebl1 ENSRNOG00000043508 ENSRNOT00000067446 3 1 1 110 X 60940903 60942814 CCTCTGGTCAATGTTCTTGG 59 60940706 60940724 TATGGTCAGGAGAGTTGGC 59 NA InUTR Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 2 2 2 82 1 101455556 101456354 CTGCAGAGGATGATTGCTG 59 101455492 101455510 CCGTCTGCAAACATGTCAG 60 NA Rattus norvegicus 81 LOC100359679 ENSRNOG00000024838 ENSRNOT00000034385 3 1 1 81 18 27383298 27390893 TAGTAACTCGAGTGACCTAAGC 59 27383238 27383257 CTTCCAGACTTGCAGAAGAG 58 NA Rattus norvegicus 81 Fam122a ENSRNOG00000051051 ENSRNOT00000076544 2 1 1 60 1 242373278 242373296 TCGATTTCATTCCGGTGTC 58 242373236 242373255 AAACACTGCTTCCCAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271,ENSRNOT00000035888 2 2 2 80 15 45910926 45926200 TATGGGCAGGGAAGAAACC 59 45910864 45910883 AGTAGTCGTCAACTTGCTCC 60 NA Rattus norvegicus 81 Mir3558 ENSRNOG00000050479 ENSRNOT00000073156 2 1 1 60 6 10992715 10992735 TCCATAGAAGTCATCCCACAG 59 10992756 10992775 ATAGAAACCCTCCACAGTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ephb1 ENSRNOG00000007865 ENSRNOT00000010634 3 1 1 81 8 110392372 110392390 GCTACGGGATTGTCATGTG 59 110384414 110392330 GCATTGATGACATCTTGATTGG 59 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000036996 3 1 2 80 6 55700055 55700074 CCAGTATAACCTCTACCGCT 58 55698771 55700013 TTCGCTGTAATTTCCTTCCG 59 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000025495 2 1 2 82 18 29191866 29191886 CCCTATCAAGGATACCCACAG 60 29191927 29232890 TGGTCTTCTACCACATACACTG 60 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000068085 1 1 2 147 18 29191791 29191809 TATCCACAACAGCCAATGG 58 29191917 29221868 AAATGTACACTGTGGTCTTAGG 58 NA Rattus norvegicus 81 Syt12 ENSRNOG00000019306 ENSRNOT00000026152 1 1 1 80 1 219695934 219695952 TGAAGCTGTCTGTTCTGGA 59 219694330 219695891 CATCAGCAGCCTTATTCTGG 59 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000028810 ENSRNOT00000044840 2 1 1 80 15 35185585 35186578 CACTGGAAGATCAATGAAAGTC 58 35185526 35185544 TTCACAGGGATGATCTGCT 58 NA Rattus norvegicus 81 Prl8a2 ENSRNOG00000017048 ENSRNOT00000022923 2 1 1 80 17 39571296 39572131 TTGTAACACTGGTTGCACG 59 39571234 39571252 TTGTGCTGTTAGAAGGGCA 60 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 2 2 2 82 14 7029552 7029573 AGATTTAACTTGTACCCACCAC 58 7029615 7030605 AAAGGAATCGGGATCAGAGG 59 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 3 2 2 87 14 7029583 7029602 CGTTCTTTCCTCAGTTTCCC 59 7030621 7031136 GGTGTCAGAACCTGATTAGGA 59 NA Rattus norvegicus 81 Rn60_X_0625.1 ENSRNOG00000051030 ENSRNOT00000076040 2 1 1 60 X 61839691 61839710 CTGGAAGTGATCCACAGAGG 60 61839732 61839751 CTGAAAGTGGTGGGTAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027615.1 ENSRNOG00000043237 ENSRNOT00000068163 1 1 1 80 17 39457824 39457843 CTGCATGTATGGTGGAAGAC 59 39457884 39458024 ACAGGTTTATTCTTCTGCCTC 58 NA Rattus norvegicus 81 Mir449a ENSRNOG00000035622 ENSRNOT00000053745 1 1 1 60 2 44897617 44897636 GGCAGTGTATTGTTAGCTGG 59 44897658 44897677 GAGAGCAGTTGCATGTTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq10b ENSRNOG00000014456 ENSRNOT00000040461 1 1 1 83 9 61664533 61667257 TGGTAAAGGCCTCTTGTACTG 60 61667302 61667320 GATAGCCAGGAAGACCTGG 59 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608,ENSRNOT00000088327 1 2 2 80 2 188234193 188234211 CTCAGTCTCTGTCATGCTG 58 188232635 188234150 TACCCAAAGATGAGCATCTG 57 NA Rattus norvegicus 81 Mir3560 ENSRNOG00000036567 ENSRNOT00000054671 2 1 1 79 X 16117947 16117965 CAGACCAGGCTTACCTTCC 60 16117886 16117904 TAATCCTTTGTCCCTGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691195 ENSRNOG00000049848 ENSRNOT00000040249 1 1 1 60 3 91870295 91870316 TACATGCGAATCTACAAGAAGG 58 91870337 91870355 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heatr3 ENSRNOG00000015459 ENSRNOT00000020793 2 1 1 80 19 19893711 19893731 TTGACGTTTGTGATGACATGG 60 19891905 19893669 CCAGTCCAGAGCTACACTC 59 NA Rattus norvegicus 81 Cox20 ENSRNOG00000004553 ENSRNOT00000006154 1 1 1 80 13 96222783 96222807 AATCTATACTGTATGGCTCACTAGG 60 96222842 96222952 AGGATCTTCTAATTCTGCTGGT 59 NA Rattus norvegicus 81 Sik1 ENSRNOG00000001189 ENSRNOT00000001579 2 1 1 80 20 10678696 10678714 GGAGAAGATCTACCGGGAG 58 10676169 10678654 GTCTCCATAACCTGGTAAAGC 59 NA Rattus norvegicus 81 Aox2 ENSRNOG00000033923 ENSRNOT00000048027 2 1 1 80 9 65220022 65220723 ATCAGATAGTTGAAGGGAAGGT 59 65220763 65220782 TTGGAATGACAAGCACTCTC 58 NA Rattus norvegicus 81 Mir3576 ENSRNOG00000036488 ENSRNOT00000054596 2 1 1 81 6 133877901 133877920 AGGGCAGTATTTGATACTCG 57 133877839 133877860 AGGAGAAATTATCCTTGGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr465 ENSRNOG00000058567 ENSRNOT00000084229 3 1 1 60 3 73254812 73254831 GAAGACCATCTCCTATGCTG 58 73254852 73254872 GATCACCAGAGCAATGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361694 ENSRNOG00000005203 ENSRNOT00000006906 2 1 1 80 14 99774749 99777539 TAACATTATTGTGGGTGGCTG 59 99774689 99774710 TTTACTTCATGAGCTTGTCACC 59 NA InUTR Rattus norvegicus 81 LOC100361694 ENSRNOG00000005203 ENSRNOT00000006906 3 1 1 81 14 99774749 99777540 ATAACATTATTGTGGGTGGCTG 59 99774689 99774710 TTTACTTCATGAGCTTGTCACC 59 NA InUTR Rattus norvegicus 81 Pcsk5 ENSRNOG00000012036 ENSRNOT00000016164 1 1 1 80 1 236276497 236277446 GACCGACAAATCAAGACCA 58 236277490 236277508 GTTGGGATTATCCGAGCAG 58 NA Rattus norvegicus 81 Tp53inp1 ENSRNOG00000007964 ENSRNOT00000010591 2 1 1 81 5 24411904 24411922 CAACTCCTGTCCTGGTCTC 59 24411967 24416481 ACTCTGGGCTTCCATTCTG 59 NA Rattus norvegicus 81 LOC100360117 ENSRNOG00000032635 ENSRNOT00000041984 3 1 1 60 3 3389770 3389791 TAAAGGACATCATTCATGACCC 58 3389811 3389830 TCACGAAAGACTACTTTCGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj2 ENSRNOG00000004720 ENSRNOT00000006254 3 1 1 60 10 99437841 99437860 GGCGGACATCTTTACTACCT 59 99437882 99437901 GCAGAAGATTACCAGCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 3 2 2 80 X 43628814 43628832 CTATGACCCATGGATTGGC 58 43628875 43628984 GATCCTATACCAAAGCCTCG 58 NA Rattus norvegicus 81 Lamtor2 ENSRNOG00000019908 ENSRNOT00000026974 3 1 1 128 2 187914461 187914776 AGTCCAAAGTACCCTGCTG 59 187914351 187914370 TTCCCGTTCCTATCGTATGC 60 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 2 2 2 94 16 18962072 18962090 GTTCACCTTGCAACAGACC 59 18960734 18962015 TCAGGAACACCTTACACGAC 60 NA Rattus norvegicus 81 Bmf ENSRNOG00000007529 ENSRNOT00000010381 3 1 1 87 3 110307447 110319513 CATATGCAACAACACCAGC 58 110307378 110307396 TTTCTCGTCTGTTCAAGGC 58 NA Rattus norvegicus 81 Prl5a1 ENSRNOG00000016307 ENSRNOT00000021982 2 1 1 86 17 38323681 38325477 TTCAACCACATCCCTCAGG 59 38325527 38325545 TACATCTCGGTACACTGGC 59 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000085988,ENSRNOT00000019059 3 2 2 80 1 141875243 141875348 AGGACCTCATCAGGTTTGC 60 141875181 141875199 CCAGGTCCTTGGTCATAGC 60 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 3 2 2 80 1 100653099 100654319 AAACATCGAGACCTATCTGC 58 100653038 100653058 TGGTAGAAGATATGGAAGCTG 57 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 1 1 2 113 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099660 91160218 CCTCCACAGTATCGATCCC 59 NA DesignNoJunction Rattus norvegicus 81 AC117925.5 ENSRNOG00000058785 ENSRNOT00000082806 1 1 1 84 4 114805714 114805732 TGTCATAAGCAAGCCACAC 59 114805780 114806101 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 AC117925.5 ENSRNOG00000058785 ENSRNOT00000082806 3 1 1 86 4 114805712 114805732 AATGTCATAAGCAAGCCACAC 60 114805780 114806101 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Gtf3c4 ENSRNOG00000054725 ENSRNOT00000088339 3 1 1 80 3 7409992 7410010 CCAGAGCTTGATCTACAGG 57 7409244 7409951 TTAATCCAGTCAGGATCTTCTG 57 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021,ENSRNOT00000059895 1 2 2 80 10 18430902 18435277 CAAGGAACAACATCCTATGCTC 60 18430843 18430864 AACAGGTAAAGGATTGATTCGG 59 NA Rattus norvegicus 81 Gp5 ENSRNOG00000038540 ENSRNOT00000040884 2 1 1 188 11 74015004 74015900 TGCTTCAGACATGCTAAGG 58 74016051 74016070 ATTCTGAAGAGCAGGATGTG 58 NA InUTR Rattus norvegicus 81 Cox7a2 ENSRNOG00000042903 ENSRNOT00000066084 2 1 1 83 8 87210399 87212440 CTGTTTCAGGAGGATAATGGGA 60 87210337 87210355 CAGAAGCATTGTGGCTCTG 59 NA Rattus norvegicus 81 Ap1m1 ENSRNOG00000014454 ENSRNOT00000019350 2 1 1 80 16 19292244 19292264 GCACAATATCCTTCATTCCAC 57 19291943 19292203 AGATCAAAGGCTTCACATGG 58 NA Rattus norvegicus 81 AABR07034637.1 ENSRNOG00000040314 ENSRNOT00000062045 3 1 1 81 11 82052787 82052807 CAGGACTGAGAAGGGAAAGAG 60 82052849 82052868 CTCTCCTCTTCTCCTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005886.1 ENSRNOG00000053539 ENSRNOT00000091049 3 1 1 93 1 204092254 204096265 CCTACTTCGTGGAGTCAGC 60 204096320 204096340 TTGGCCTTGAACTTGAAAGAG 59 NA Rattus norvegicus 81 Zcchc10 ENSRNOG00000006943 ENSRNOT00000009098 3 1 1 80 10 38664157 38664177 AGTCCGAAATGAATCCAAGAG 58 38664218 38668066 TTATTGGCTTCACCTTGACG 59 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846,ENSRNOT00000067129 2 2 2 80 5 24609776 24609905 GACTCAATATTGCCAAGGGT 58 24609715 24609735 CAAATCTAACCAGAGCTTCCC 59 NA Rattus norvegicus 81 Trmt1 ENSRNOG00000002914 ENSRNOT00000003941 3 1 1 80 19 25804579 25804828 CAAGGGAATCCAGATCAAGG 58 25804869 25804889 GTTTCCTCCTCTTGATCAGAC 58 NA Rattus norvegicus 81 Ilk ENSRNOG00000018993 ENSRNOT00000025906 2 1 1 80 1 170583490 170583654 ATTCTGGAGAGCTATGGAAAGG 60 170583694 170583713 TTGTACTCCAGTCTCGAACC 59 NA Rattus norvegicus 81 LOC100910111 ENSRNOG00000047953 ENSRNOT00000075359 1 1 1 60 2 35298921 35298939 CCAGCACTTACAACAACGA 58 35298962 35298981 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-542-1 ENSRNOG00000046539 ENSRNOT00000070845 1 1 1 60 X 158588545 158588566 GATCATCATGTCACGAGATACC 59 158588582 158588605 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r30 ENSRNOG00000057219 ENSRNOT00000086294 2 1 1 60 1 63333800 63333820 ATTCCAAGCTCTTTCATGCAG 59 63333841 63333860 AAACACATGACATCAGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 1 2 2 80 2 188004523 188004541 CATGTAACGTGACCATCCA 58 188004585 188004866 CAGCTTTCTGTTGCTTCTG 57 NA Rattus norvegicus 81 RGD1305089 ENSRNOG00000007043 ENSRNOT00000009304 2 1 1 80 6 76168653 76171105 TAACCTTCCAGCATATTCTCAG 58 76171143 76171164 GGTCTTCATCATAAGGAATGTG 57 NA Rattus norvegicus 81 Vamp8 ENSRNOG00000012748 ENSRNOT00000017301 1 1 1 98 4 100252665 100252683 ATGACCCAGAATGTGGAGC 60 100250430 100252604 CTTGAAGTGTTCAGACGTGG 59 NA Rattus norvegicus 81 Pate3 ENSRNOG00000046243 ENSRNOT00000074011 1 1 1 81 8 36840962 36840981 CATTGCAGAAGAGGCTTTGG 60 36840475 36840920 GAGAGCCATTGGAGTAGATCC 60 NA Rattus norvegicus 81 C2cd3 ENSRNOG00000017608 ENSRNOT00000023802 1 1 1 80 1 165429989 165432335 CCTTGAGAACGGAATTACTCTG 59 165432374 165432394 TGCTGACTATTAAAGACGGGA 59 NA Rattus norvegicus 81 C2cd3 ENSRNOG00000017608 ENSRNOT00000023802 2 1 1 80 1 165438679 165439590 AAGAGATCTGGGATCACAGG 59 165439633 165439651 CTGCATAAATTCCAGGCCC 59 NA Rattus norvegicus 81 Fchsd1 ENSRNOG00000039415 ENSRNOT00000026381 3 1 1 80 18 31102303 31102401 GTTTGGCTATCAGGCAGGA 60 31102241 31102261 GCATCTCCTTCCTCTATGACC 60 NA Rattus norvegicus 81 Cd276 ENSRNOG00000033608 ENSRNOT00000042681 1 1 1 123 8 63332704 63335215 CCTTACAGGAGCTGTGGAG 60 63332599 63332617 GAGGTTGAGCTGTCTCAGG 60 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 1 2 2 80 10 91017976 91018278 ACCTGGAGGTGTATAACGAG 59 91017915 91017933 CCTTATCAGGGTCCTCTCG 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000061715 ENSRNOT00000080431 2 1 1 82 X 45179130 45179151 CAGAATACATGAACTTCGTGGA 59 45178464 45179087 GTTTGGACAGGTGTCTGTG 59 NA Rattus norvegicus 81 AABR07007932.1 ENSRNOG00000052652 ENSRNOT00000084377 3 1 1 60 2 35549334 35549352 GTACCCATGCTGAATCCCT 59 35549292 35549311 TCAAGGCAATACTGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a12 ENSRNOG00000026387 ENSRNOT00000036564 1 1 1 80 1 227406714 227408634 CTGACTGTCTGGTGAAGAG 57 227406652 227406670 ACAGAAACAGAACCACTCC 57 NA Rattus norvegicus 81 Rnf14 ENSRNOG00000045637 ENSRNOT00000075159 1 1 1 80 18 31456997 31457018 AGATGGTCAAGTTAAATGCCTC 59 31457059 31458178 ACCAGCTCTTTGACCTGAC 60 NA Rattus norvegicus 81 Ptpro ENSRNOG00000006231 ENSRNOT00000040576 2 1 1 80 4 171453195 171453215 ACGAATTTGTGGACATCTTGG 59 171453257 171459415 TGTACTGCTCCTCTGTCTG 59 NA Rattus norvegicus 81 Olr1185 ENSRNOG00000039892 ENSRNOT00000061271 3 1 1 60 8 21164814 21164833 GTTGCTTCACTGATGTACAC 57 21164856 21164874 TCAGGCTGTAGATGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 1 2 2 80 1 257390511 257393468 TATGTCAGCTTCTATCAGGAGG 59 257393507 257393527 TCTCCTACCACCAAACAACTC 60 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 3 2 2 80 1 257403591 257403686 AGGGTTTGCAAGGTTTCTG 59 257403729 257403748 TGCAGGTCTTTCTTGTTCTC 58 NA Rattus norvegicus 81 Aff4 ENSRNOG00000006965 ENSRNOT00000009440 1 1 1 80 10 38712887 38712905 ATCAGGAAATTCAGCAGGG 58 38712946 38716688 CTTTGCTAGTAACTTTGTACGG 58 NA Rattus norvegicus 81 Olr1265 ENSRNOG00000047572 ENSRNOT00000073159 3 1 1 60 2 46223614 46223634 TGTGGTCTTTGTTCTAGTTGG 58 46223656 46223674 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp395 ENSRNOG00000014191 ENSRNOT00000044562 2 1 1 80 15 48795828 48795848 CAAACTGATCATGGCTTTGAG 58 48795889 48796369 CACAGAGTTCTTCCTCTTCC 58 NA Rattus norvegicus 81 Mir448 ENSRNOG00000035635 ENSRNOT00000053758 3 1 1 62 X 118277707 118277725 TAGTGCTGCCAGGAAATCC 60 118277750 118277769 ATCCTACATATGCAACCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph1 ENSRNOG00000057862 ENSRNOT00000084726 1 1 1 99 20 10001712 10003552 CACAGATGTGGAAAGAGGTG 59 10001632 10001650 CCACAAGGCCAATTCTGTG 59 NA Rattus norvegicus 81 Mir325 ENSRNOG00000035627 ENSRNOT00000053750 1 1 1 60 X 76334324 76334344 TGCTCAGTAAGTGTTTGTGAC 59 76334284 76334304 CAGTGCTTGATTGATAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aagab ENSRNOG00000008424 ENSRNOT00000011385 1 1 1 80 8 68540057 68542075 GAGGAGGACGATGACTTCC 59 68542118 68542137 GACATTGGACCAGACATTGG 59 NA Rattus norvegicus 81 Aagab ENSRNOG00000008424 ENSRNOT00000011385 3 1 1 80 8 68540001 68540019 AGTGGTGCATCAAACATGG 59 68540062 68542081 ATTCAGGGAAGTCATCGTCC 60 NA Rattus norvegicus 81 Lyrm2 ENSRNOG00000043105 ENSRNOT00000065926 2 1 1 80 5 48048402 48048421 CTGACCGGAAATACCTTCAG 58 48048463 48048854 TTCGGATTGTATCCTCCTCG 59 NA Rattus norvegicus 81 Lyrm2 ENSRNOG00000043105 ENSRNOT00000065926 3 1 1 80 5 48047961 48048336 GACACTGAAGCAGTTCATGAG 59 48048375 48048396 CTTGGAATTTGCTTAATCGCTC 59 NA Rattus norvegicus 81 Fam167a ENSRNOG00000011316 ENSRNOT00000015055 2 1 1 80 15 46629608 46640685 TCAGAAAGGAACTGGCAGAG 60 46640728 46640746 TGTTGATGTCTCCTCGGAG 59 NA Rattus norvegicus 81 RGD1564036 ENSRNOG00000003068 ENSRNOT00000004111 3 1 1 80 10 35701604 35701622 TAAGACACAGCTCTCAGCC 59 35701664 35702229 TGATCCCATTTCCTCTTCCTG 60 NA Rattus norvegicus 81 Orc2 ENSRNOG00000012558 ENSRNOT00000051843 3 1 1 80 9 65364124 65364663 GACAAAGCAGGTGACTTGG 59 65364062 65364080 CTGCAGCGTTCTATCAGAC 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650,ENSRNOT00000027091 1 2 2 80 1 220244728 220244833 GCAAACAGGGAAAGAGGTG 59 220244876 220244895 GCCTCATCCTTAGCTTTGAC 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660,ENSRNOT00000071469 1 2 2 80 17 14518588 14518856 ACCACCTATGGAAAGTCCC 59 14518897 14518918 TGCAGTATCTCTTTACAGTTCC 58 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660,ENSRNOT00000071469 2 2 2 80 17 14518593 14518862 CTATGGAAAGTCCCACCAGG 60 14518901 14518923 GCTGATGCAGTATCTCTTTACAG 59 NA Rattus norvegicus 81 Msmo1 ENSRNOG00000032297 ENSRNOT00000044171 1 1 1 80 16 26871376 26871394 ATTTCCTGCACAGACTCCT 59 26871438 26873670 CAAATGGAGCCTGGAACTC 59 NA Rattus norvegicus 81 Gcm2 ENSRNOG00000015008 ENSRNOT00000020244 1 1 1 80 17 21495162 21495180 GAGGACACAGTGGATACCC 59 21495224 21495914 CATGAACTCCTTTGGCCTG 59 NA Rattus norvegicus 81 Prx ENSRNOG00000018369 ENSRNOT00000024771 3 1 1 121 1 84319901 84319919 GTCTCCTTCTGCTTGAAGC 59 84320004 84320601 AGACTCTGGATGTTCAGCT 58 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 3 2 2 94 15 48443506 48443524 CTGAACAAGGTAGTGGTGG 58 48434184 48443448 GTACGGACAACCATGATGG 58 NA Rattus norvegicus 81 Chd7 ENSRNOG00000006689 ENSRNOT00000008901 2 1 1 80 5 21910310 21910666 TGGTACAACATGCGAAACTG 59 21910703 21910727 CTCATAGAGAAATGTAATGGACTGG 59 NA Rattus norvegicus 81 Cry1 ENSRNOG00000006622 ENSRNOT00000009124 3 1 1 80 7 24632311 24632329 CTGCTCTCAAGGAAGTGGT 59 24632370 24632487 GAGCTTCTTCCTTGCTTTAGTG 60 NA Rattus norvegicus 81 Cib1 ENSRNOG00000033498 ENSRNOT00000042558 3 1 1 80 1 142016437 142016456 GACCTCCTGAGTGTCTTCAG 60 142016260 142016397 ATCATCAAAGTCAAAGATGCGG 60 NA Rattus norvegicus 81 Olr167 ENSRNOG00000049739 ENSRNOT00000072462 3 1 1 60 1 169801897 169801915 GCAGACCACTCCAATACAC 58 169801855 169801874 AACACAGTTGCTTTGACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spcs2 ENSRNOG00000018164 ENSRNOT00000024772 2 1 1 96 1 164839426 164849646 TGGTTTGTTGGATAAGTGGA 57 164839349 164839368 TTTGGCAGAATCATCCAGAG 58 NA Rattus norvegicus 81 Rfx7 ENSRNOG00000060367 ENSRNOT00000086841 3 1 1 86 8 79268217 79268237 CCCACTTCCTTGTAAAGAGTC 58 79268285 79271509 CTTTAAGTCCTGCTGGTGC 59 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672,ENSRNOT00000022543 1 2 2 80 4 71656883 71656903 CACACTACTCTAGTCACCCTC 59 71656945 71661372 TTGCATTTCCTGTGCAGTC 59 NA Rattus norvegicus 81 Ppap2a ENSRNOG00000009980 ENSRNOT00000066098 1 1 1 80 2 44697584 44697602 GACAGTACCGTCACAACCA 60 44697640 44716584 CAGAGTTTCTCCAGTAATCATAGAG 59 NA Rattus norvegicus 81 Cyp2ac1 ENSRNOG00000048329 ENSRNOT00000072826 3 1 1 82 9 23435081 23437493 CTATTATATTCCAAAGGGCACTGAG 60 23435023 23435043 CATCTGGTGTTTCCCATTGTG 60 NA Rattus norvegicus 81 Ipo13 ENSRNOG00000019758 ENSRNOT00000026844 1 1 1 80 5 136737333 136737513 GGCAGAAGAGATACCTAATCC 58 136737273 136737291 AGTGTGGTAAAGAGGTTGG 57 NA Rattus norvegicus 81 Tamm41 ENSRNOG00000007874 ENSRNOT00000010397 1 1 1 80 4 146930113 146930131 ACAGGGATGTGGAAGAGAC 59 146928755 146930069 TTGAAGAGACCGCTAGTCG 59 NA Rattus norvegicus 81 Cbln1 ENSRNOG00000000010 ENSRNOT00000000011 3 1 1 87 19 20607760 20607945 ACTTCGACCAGGTACTAGTG 59 20607994 20608013 AAACTGTAGATGCCTTTGCG 59 NA Rattus norvegicus 81 Eif1ax ENSRNOG00000005736 ENSRNOT00000008509 2 1 1 80 X 37584632 37585467 GGATGGGCAAGAATATGCT 58 37585509 37585529 CTCTTTACACCATCGAAACAC 57 NA Rattus norvegicus 81 Tgfb1 ENSRNOG00000020652 ENSRNOT00000028051 1 1 1 105 1 82486543 82486561 TTACCTTGGTAACCGGCTG 60 82486629 82488888 CTGTATTCCGTCTCCTTGGT 59 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 3 2 2 80 10 40257665 40257683 TGCAGGAATTCGGAATCAG 58 40256545 40257621 TCATTGTCTGCAGACTCTG 57 NA Rattus norvegicus 81 RGD1561215 ENSRNOG00000050763 ENSRNOT00000070906 1 1 1 80 4 155010708 155010728 CTCTAGTCTGAAGTTCTGTGC 58 155010770 155015537 TTCTGCAACACGTTCACTC 59 NA Rattus norvegicus 81 RGD1561215 ENSRNOG00000050763 ENSRNOT00000070906 3 1 1 80 4 155010709 155010730 TCTAGTCTGAAGTTCTGTGCAG 60 155010770 155015538 CTTCTGCAACACGTTCACTC 60 NA Rattus norvegicus 81 S100a4 ENSRNOG00000011821 ENSRNOT00000015958 1 1 1 80 2 189998572 189998592 AGTTCAAGCTGAACAAGACAG 59 189998634 189999309 CTTCGTCTGTCCTTCTCCC 60 NA Rattus norvegicus 81 Myo19 ENSRNOG00000002852 ENSRNOT00000003886 3 1 1 80 10 72212348 72212481 GTCTGGAAGAGGATTGTTTCG 59 72212523 72212541 AGATGTTGTTCTGGGTGGG 60 NA Rattus norvegicus 81 Olr1561 ENSRNOG00000052915 ENSRNOT00000081342 2 1 1 89 11 43743157 43866643 ATCTACCTGGTCACCATGG 59 43866693 43866714 CAGAAAGATGTACATGGGTGTG 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473,ENSRNOT00000076254 1 2 2 60 15 5808515 5808535 CAGAAAGACCCAAGAAATCCT 58 5808556 5808575 CACAGATTCCAGAAGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 2 2 2 80 20 7772465 7772483 CTTGAAGGGCAAGTGATCC 59 7772523 7772650 GGAGAAAGACTCTTTCTGTATCG 59 NA Rattus norvegicus 81 Ppm1g ENSRNOG00000026905 ENSRNOT00000031842 2 1 1 80 6 26535657 26535675 TCCTGACATCAAGGTGCTG 60 26535718 26536165 CTCATCACATTCCAGATGCC 59 NA Rattus norvegicus 81 Ppm1g ENSRNOG00000026905 ENSRNOT00000031842 3 1 1 80 6 26531929 26533264 GGATGATGTGGACAATGAGG 59 26533306 26533325 CCATATCGTGTCAGCAACTC 59 NA Rattus norvegicus 81 Dhx33 ENSRNOG00000007054 ENSRNOT00000009468 3 1 1 80 10 57628325 57628462 ATCCAGAGGTGTAACCTGG 58 57628263 57628282 CATGAAGTCAAAGGTGAGCA 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 3 2 2 81 14 86385679 86386176 CTACATAACCCGGTTACTCTC 57 86385618 86385636 CACAGACCACCTGAAACTG 58 NA Rattus norvegicus 81 Olr1711-ps ENSRNOG00000047164 ENSRNOT00000074773 1 1 1 60 20 1216865 1216889 CATTATACACAGCAAGTACACTCTC 60 1216904 1216925 AACTGGTGAATTACTTTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062513.1 ENSRNOG00000001804 ENSRNOT00000040645 1 1 1 80 4 180541012 180541031 ATTATGGAGAGCAGACACGA 59 180538503 180540969 CATGACATCCACCAGTTCC 58 NA Rattus norvegicus 81 LOC501317 ENSRNOG00000047982 ENSRNOT00000049865 1 1 1 80 19 28968255 28968912 CTTCTATCGCAACCTGCAC 59 28968955 28968974 CTCTCCTGCTTCAATGTGAC 59 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 3 2 2 81 13 89587353 89588669 GGAAAGACATGATACTGTCAGC 59 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 RT1-M2 ENSRNOG00000049590 ENSRNOT00000041074 3 1 1 80 20 1339219 1339425 TCCTTTAAAGGCTCCCACTC 60 1339158 1339177 AGTCATGTAGTGGGTCTCCT 60 NA Rattus norvegicus 81 Med6 ENSRNOG00000006976 ENSRNOT00000009483 1 1 1 80 6 105310209 105310950 ATAAACTCCAGAGTGCTTACC 58 105310149 105310170 AGGATGATATCGACAGTATGAC 57 NA Rattus norvegicus 81 Glipr2 ENSRNOG00000014838 ENSRNOT00000019916 2 1 1 83 5 59438237 59438255 TCTCAAACACAGCCCAGAG 60 59438300 59439946 ACTTCCTTTCCTGTCTGATCG 60 NA Rattus norvegicus 81 Ppp2r2a ENSRNOG00000011158 ENSRNOT00000015318 2 1 1 80 15 43674934 43677569 TGGGTCTGACAGTGTTGTC 60 43674872 43674893 GTTATATCCCGCTTTGTGTTCC 60 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 2 2 2 80 12 12724614 12724633 CCTTGATGGGAATGTTCGAC 59 12722469 12724575 CTAAGTTACCTTCGACATTCAGC 60 NA Rattus norvegicus 81 Gjd2 ENSRNOG00000008337 ENSRNOT00000011078 3 1 1 80 3 105470338 105470356 GGGAATGGACCATCTTGGA 59 105469172 105470294 CAGTCAACAGGATCCTCCC 60 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 1 2 2 80 20 10759193 10794920 GTGGCTTCTGAGTGATCCA 59 10759131 10759150 ACGTCTGGTTCTAGAACCAC 60 NA Rattus norvegicus 81 Gpld1 ENSRNOG00000017702 ENSRNOT00000024196 1 1 1 80 17 42096290 42096625 CACCTACAATGGCTCTGTG 58 42096228 42096247 CAGGAGATGGTGATGTTAGG 58 NA Rattus norvegicus 81 LOC100910256 ENSRNOG00000050950 ENSRNOT00000072279 3 1 1 60 8 42871564 42871584 TGTACTTCTTCCTCAGCAGTC 60 42871524 42871547 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 3 1 1 107 5 162032740 162052410 CATCCAAACTGCCCAAAGG 59 162052480 162052499 ACTTACACTCGCTGAAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 1 2 2 180 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550624 98550642 CATTGGATGTAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rmnd5b ENSRNOG00000047719 ENSRNOT00000075525 1 1 1 80 10 37074209 37074228 CCTATCAAGCTCATCTGTGG 58 37074069 37074166 GGGACACTTTAGCTTTCCT 57 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 1 2 2 80 19 19699994 19700787 AATGTACCTTGCTGAACAAGTG 60 19700827 19700846 TGTATGCTTACAACATCGCC 59 NA Rattus norvegicus 81 RGD1564171 ENSRNOG00000037406 ENSRNOT00000056603 3 1 1 82 2 189414402 189415511 GAAGACTGTCAACAGGTGG 58 189415556 189415575 TAGCATACAGGTTTCTCCGT 59 NA Rattus norvegicus 81 Tshz2 ENSRNOG00000048433 ENSRNOT00000073788 3 1 1 60 3 166746436 166746456 GAGACAATAGCTGACGAAGAG 58 166746477 166746496 TCCGACTGCATAACTTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1199 ENSRNOG00000011563 ENSRNOT00000015369 1 1 1 60 8 40285955 40285978 GTTATCTCTGAGTCCTTCATTCTG 59 40285996 40286015 TACAGATGGCAACATAACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 3 2 2 88 1 213977334 213977600 ATGTATGCCAGCATGTCTG 58 213976471 213976489 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550,ENSRNOT00000091101 1 2 2 89 1 88961384 88961486 ATCTGAAGGACACTCACGA 58 88961539 88961557 CACCTCTCACCAACTTCAC 58 NA Rattus norvegicus 81 Sned1 ENSRNOG00000023548 ENSRNOT00000022290 1 1 1 80 9 100425905 100425925 TTGTAGACGGAAGAGCAAGAG 60 100425965 100426774 TAGTGGGTTGTGATCTCACAG 60 NA Rattus norvegicus 81 Sned1 ENSRNOG00000023548 ENSRNOT00000022290 3 1 1 80 9 100412013 100412154 CTCCTCTGTGAATTTGAAGTCAC 60 100412193 100412212 ATACTCCATGCAGTAGCCTC 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000087449,ENSRNOT00000001264 2 2 2 96 12 9988107 9988424 CAAGAGCGCAATGATTGTG 58 9987912 9987932 CTCTACATAGACGAGTCTCGA 58 NA Rattus norvegicus 81 Urm1 ENSRNOG00000026636 ENSRNOT00000037494 3 1 1 85 3 8393752 8402570 GAGGAACCCTGGGATATCC 59 8402618 8402637 TCTCCCTGGATGAATAGCTC 58 NA Rattus norvegicus 81 Slitrk5 ENSRNOG00000009649 ENSRNOT00000012785 3 1 1 60 15 96823589 96823609 CTCAAAGTGGGAGTGTTAGTG 59 96823631 96823649 TCTCTGCGAATTTCTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gal3st2 ENSRNOG00000022982 ENSRNOT00000038687 2 1 1 98 9 100991810 100991828 TATGTAGAGGGCCTGAAGC 59 100991889 100992402 CATGACTTTCTGCACCTCAC 59 NA Rattus norvegicus 81 Clec4m ENSRNOG00000001017 ENSRNOT00000001344 1 1 1 80 12 2413051 2413075 GTTCCAGGTATTCTATTATCAGCTC 59 2412734 2413015 GGCTCTGCTTCGTATATTCTG 59 NA Rattus norvegicus 81 Clec4m ENSRNOG00000001017 ENSRNOT00000001344 2 1 1 80 12 2411917 2412673 TTCTTGTCCTAGTCTCAAAGGT 59 2411858 2411879 CTTCAGTCTTCAGTTGCATGAG 60 NA Rattus norvegicus 81 Mir3545 ENSRNOG00000035489 ENSRNOT00000053612 1 1 1 60 6 136705012 136705035 GTCTAGTGGTCCTAAACATTTCAC 60 136704975 136704996 GTGGTTCTTAACAGTTCAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910575 ENSRNOG00000048985 ENSRNOT00000074673 3 1 1 80 4 173118785 173118804 TTACCTGTTGACTGGAGGAC 59 173118845 173120420 CTAATTTCCTTGGGTTCTGCT 58 NA Rattus norvegicus 81 AABR07001099.1 ENSRNOG00000017963 ENSRNOT00000024149 1 1 1 80 1 37886537 37886555 GCCTTCTCAGTGGAGTCTG 60 37886026 37886493 TTAGCAACAGCAAGACCCA 60 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 3 2 2 80 5 24454642 24457631 ATTTACTTTGCCACCAACCAG 60 24454582 24454602 ATTGAAGAAGTCAGAGCACAC 59 NA Rattus norvegicus 81 Bre ENSRNOG00000004364 ENSRNOT00000005855 2 1 1 80 6 25693518 25737830 CTTGTACACATTGACCTGCC 59 25693457 25693476 GTTGGTAAAGTGGTAGACGG 58 NA Rattus norvegicus 81 Abt1 ENSRNOG00000017585 ENSRNOT00000023649 2 1 1 85 17 43947202 43947222 GGCAGCTAGTCTACATAACAC 58 43947267 43947437 GATGCAAATACTTGAGGTTCC 57 NA Rattus norvegicus 81 Gtpbp8 ENSRNOG00000002044 ENSRNOT00000002797 3 1 1 80 11 60913547 60913566 AAGTGCTCCAGATTCAGGAG 60 60913608 60916454 AGGTTACTGCGCTTATAGGG 59 NA Rattus norvegicus 81 Obp1f ENSRNOG00000045757 ENSRNOT00000045436 1 1 1 80 X 45283720 45283739 GCTTACTTTCAGCACATGGA 59 45283231 45283679 ACATTCACTGTCCAACTTGAC 59 NA Rattus norvegicus 81 Cst9l ENSRNOG00000005162 ENSRNOT00000006869 2 1 1 80 3 143174588 143175231 GATCGGAATAATACCTTCACCTG 59 143175270 143175289 CACATTCTTGAAGAGCTGGA 58 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534,ENSRNOT00000056251,ENSRNOT00000056250 3 3 3 80 9 121842948 121842966 GGGAAATCCCTCGAGAGTC 59 121843010 121843190 TCCATGTTCCCATCCACAC 60 NA Rattus norvegicus 81 S100a16 ENSRNOG00000012053 ENSRNOT00000016499 2 1 1 62 2 189927865 189927883 AAGAGCTGAACCACATGCT 60 189928081 189928099 TCTGGATGAGCTTGTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 S100a16 ENSRNOG00000012053 ENSRNOT00000016499 3 1 1 62 2 189927864 189927882 AAAGAGCTGAACCACATGC 59 189928080 189928098 CTGGATGAGCTTGTCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 RGD1564704 ENSRNOG00000031283 ENSRNOT00000044808 2 1 1 60 X 79742596 79742614 GAAGCTCCAGGAAGAGGAC 60 79742554 79742573 GACAATTTGAGGAGGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam160b1 ENSRNOG00000017225 ENSRNOT00000023247 3 1 1 80 1 278220465 278221265 TGATTGTCAGGGTTGTTGGA 60 278221305 278221326 TTCTGACTAAGAGAAGCTTGGG 60 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076337 3 1 4 81 19 755465 755918 CTCCTGTGAGAAAGCTGGT 59 755959 755981 CCTCTTACCTGTTGTTTCATCAG 60 NA Rattus norvegicus 81 Hspa9 ENSRNOG00000019525 ENSRNOT00000026696 1 1 1 80 18 27734094 27734113 TTGACATTGATGCCAATGGG 59 27732962 27734054 ACTGGATTACAATCTGTTGCTC 59 NA Rattus norvegicus 81 Olr1129 ENSRNOG00000039922 ENSRNOT00000061326 3 1 1 60 8 18993740 18993759 TTCCTCCAATGTTGAATCCC 58 18993782 18993800 AGTGCCTCCTTCATATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pigb ENSRNOG00000059622 ENSRNOT00000088562 3 1 1 80 8 79705697 79705717 ACTCTTCAGACATCTCTACCA 58 79698412 79705657 AAGGTAATGAATCCTACGGGT 59 NA Rattus norvegicus 81 Eef1e1 ENSRNOG00000016390 ENSRNOT00000022065 1 1 1 80 17 26787623 26787643 GTGGTTAGAGTTCAGGATCAC 58 26787684 26788602 GAGTTGAGATCCTTCAGCAG 58 NA Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000007662 2 1 2 61 3 66417568 66417586 TCCAGGGTTATGAGATCGT 58 66416042 66417544 GGTCATGTTTCCACTTCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Efr3b ENSRNOG00000012950 ENSRNOT00000068214 2 1 1 80 6 28404826 28405071 CTTCATGAAGAAGCACTCCC 59 28404765 28404785 TAGTGCTTCTGGATGTTTGTC 58 NA Rattus norvegicus 81 AABR07066994.1 ENSRNOG00000042034 ENSRNOT00000064584 3 1 1 60 9 25203773 25203791 CTTCAACAGCAACTCCCAC 59 25203815 25203833 GTCATTGAGAGCAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh6 ENSRNOG00000013535 ENSRNOT00000018246 1 1 1 80 2 63119577 63119595 GATGAACCTCCTGACATCC 57 63119514 63119537 GCCTATGGATGTGTATATCTGAG 58 NA Rattus norvegicus 81 Rwdd3 ENSRNOG00000029893 ENSRNOT00000040080 2 1 1 80 2 224713362 224723003 CTGTTCAGAGACAGATGGG 57 224713300 224713318 AACTCTAAGGGCACATCCT 58 NA Rattus norvegicus 81 LOC680367 ENSRNOG00000047843 ENSRNOT00000071798 3 1 1 60 8 41702572 41702590 CATATCTTGCTGCTCCCAC 58 41701867 41702548 CACAGGAATCTAGCAGGGA 59 NA DesignRelaxed Rattus norvegicus 81 Olr1463 ENSRNOG00000003210 ENSRNOT00000004282 2 1 1 60 10 45939954 45939972 GAGCCTAGACTCCAAACAC 58 45939912 45939930 AGAGGTCCAGCATAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg8 ENSRNOG00000012292 ENSRNOT00000016478 1 1 1 80 1 162358428 162360204 ATTCTCCCAATGAGCCTACTG 60 162360246 162360264 ATAGTGTCCGGTTGTCGTC 60 NA Rattus norvegicus 81 Alg8 ENSRNOG00000012292 ENSRNOT00000016478 2 1 1 80 1 162349606 162349626 GAGAAACCGAAGTTTGTTCTG 58 162349666 162349956 GTACTGGAAATGAATGTGGTC 57 NA Rattus norvegicus 81 Slc7a15 ENSRNOG00000006119 ENSRNOT00000039492 2 1 1 80 6 33734859 33738056 AAGAACCCAAAGCAGAACC 58 33734797 33734818 GATATTGACCAGGACATACAGG 58 NA Rattus norvegicus 81 Cox19 ENSRNOG00000050052 ENSRNOT00000072509 3 1 1 94 12 17395721 17398250 CTAGACCACTTCGGTGAGTG 60 17398305 17398325 GATTCATTTCTGCACAGAGCA 59 NA Rattus norvegicus 81 LOC100910445 ENSRNOG00000046411 ENSRNOT00000072355 1 1 1 60 8 43007242 43007260 GCACGATCATCCTGATCCT 59 43007200 43007219 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts12 ENSRNOG00000018865 ENSRNOT00000025693 1 1 1 80 2 61282371 61282389 CCAAGACACTGGTTTCCTG 58 61282433 61292844 AAACAGAGCACTCACTCCA 59 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 1 2 2 117 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571942 21571960 AAGTTTGGCAACCATCAGC 59 NA Rattus norvegicus 81 Pdrg1 ENSRNOG00000008845 ENSRNOT00000012141 3 1 1 80 3 148490520 148491883 CCGAGTGTCTCTGAAGACG 60 148490458 148490481 GATCATTTCCTTCGTCTTAAGGTG 60 NA Rattus norvegicus 81 LOC100911689 ENSRNOG00000046670 ENSRNOT00000041899 3 1 1 87 1 99324584 99324700 CCCTGAATTGGGAATTACCTG 59 99324517 99324535 TTCTGTTCGTAGGCTTCGA 59 NA Rattus norvegicus 81 Clpsl2 ENSRNOG00000038807 ENSRNOT00000059292 3 1 1 61 20 5792469 5792488 TAAGTCCCATGTAGGCATGG 59 5794132 5794150 GACACAGGATGTTCAGGCT 60 NA DesignNoJunction Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 3 2 2 80 17 42813731 42813752 GAGCCATAGAGCTTAACTATGG 58 42812813 42813690 CAATTCCAGGCTGAATCCT 58 NA Rattus norvegicus 81 Kcnh8 ENSRNOG00000058626 ENSRNOT00000087331 3 1 1 80 9 3697662 3697681 TTATGAAAGGATTGCTGGCG 59 3510043 3697620 TGAAGTTGCTATGTGTTCCG 59 NA Rattus norvegicus 81 Zc3hav1l ENSRNOG00000013944 ENSRNOT00000018645 3 1 1 80 4 65992836 66001145 TTCCCAGAGGTCTGTTTACTG 60 65992776 65992797 CTTGTTGCACTTATCCTTGAGG 60 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284,ENSRNOT00000064284 2 2 2 81 10 103673707 103673727 GTCTCACTAATTGCTTGGAGG 59 103671115 103671753 GATCATCCTCCAGAGGCTG 59 NA Rattus norvegicus 81 Olr490 ENSRNOG00000053834 ENSRNOT00000075227 1 1 1 60 3 73624106 73624126 TACGGTGTGATCATGTCTCAG 60 73624066 73624085 TGTAGAGGTATGGAATGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne5 ENSRNOG00000000522 ENSRNOT00000000629 1 1 1 80 20 6448944 6448963 TGTGCAATGGAGACTATGAC 58 6438010 6440448 CTCCAATGAAATCATGGCTG 57 NA Rattus norvegicus 81 Xrcc2 ENSRNOG00000007493 ENSRNOT00000010025 3 1 1 81 4 5849795 5849813 CTTGAAGGCAGAAGCTCCT 60 5849856 5857218 CAAGAATATCACCGTGCACTG 60 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446 1 1 2 82 14 12988135 12988155 GGATTGTAGGAATACGAGGAG 58 12975260 12988091 AAATTTGGCACTTGCATGG 58 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446,ENSRNOT00000077861 1 2 2 143 14 12995408 12995426 TTCGTCTTCTGCCTCTTCC 59 12995283 12995301 ATCTGCAGATGGAAACCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 2 2 2 80 1 201067357 201070051 CAAGTTAGAGGTGAGGGTG 57 201067295 201067314 TAGACCTGGTAAGACTCCTG 58 NA Rattus norvegicus 81 Nabp1 ENSRNOG00000015416 ENSRNOT00000021403 3 1 1 80 9 55050448 55050678 TTATTGTCCTGGAGATAGGACG 59 55050717 55050737 CCGTTCTATCAGCTACTTTGC 59 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968,ENSRNOT00000047657 1 2 2 111 10 94958203 94958224 GAGCTGTATGCGAATATCTGTG 60 94959513 94960916 CAAGGCCTTCTTGTTCTGTG 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000043870,ENSRNOT00000070918,ENSRNOT00000046246,ENSRNOT00000052367,ENSRNOT00000042251 3 6 6 92 6 4298693 4302986 GAATTCAAGAGCACTGTGGAC 60 4298621 4298640 CGCTTCAATGAACTGCTCTC 60 NA Rattus norvegicus 81 LOC100910965 ENSRNOG00000051156 ENSRNOT00000076565 2 1 1 60 7 116585549 116585567 CTGTGAGGTATGTGGACAG 57 116585591 116585609 GATCTTGTGATGCTGTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051791.1 ENSRNOG00000046568 ENSRNOT00000071143 1 1 1 60 3 21521434 21521453 TATTGAACCCTTCTCCAGCC 60 21521847 21521867 CTTCATCACATCTGGAAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076751,ENSRNOT00000087894 3 3 4 80 1 267627967 267629216 AGCTATTCTGTAAGGTCCCAC 59 267629256 267629276 CCTTCAGATCCGTACAGTCTC 60 NA Rattus norvegicus 81 Slc44a3 ENSRNOG00000011723 ENSRNOT00000055711 3 1 1 80 2 225104961 225105768 CAACATCAATGGCTCTTTCC 58 225104900 225104919 CACAGTCTATCTGCACTTGG 58 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558,ENSRNOT00000015963 1 2 2 80 8 64682055 64686967 AAGGAAGAGAAGTACAGTATAACCC 60 64687003 64687023 TTCATTCAGAGTGTTCATGCC 59 NA Rattus norvegicus 81 Cryz ENSRNOG00000028319 ENSRNOT00000032808 3 1 1 80 2 260910397 260910415 ATAAACCCAAGGGACACCA 59 260910459 260910804 CTGGAATTCCTCCTTGGTG 58 NA Rattus norvegicus 81 Vom1r-ps112 ENSRNOG00000050623 ENSRNOT00000059671 3 1 1 60 1 60827496 60827517 AATCTCTTCTCTATGTCAGCTC 57 60827457 60827475 CACTAGGATCAAGCTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000075810 3 1 10 112 18 29995605 29995623 TCATACTCACAGCAGAGGC 59 29995698 30185397 GGGTTGTCTGTAGAACTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045,ENSRNOT00000083102 1 2 2 80 8 55132795 55137251 TCATCGAGATTGTTGCAGG 58 55132733 55132752 CCACATTGCTCTTCATCTCC 59 NA Rattus norvegicus 81 LOC680959 ENSRNOG00000030346 ENSRNOT00000045382 3 1 1 60 X 60392020 60392041 AAAGTTTCTGGTCCACAATGTC 60 60392060 60392080 GTAAGATTTGCTGCACATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plod1 ENSRNOG00000007763 ENSRNOT00000010433 3 1 1 80 5 164728508 164728527 CGCTGGATAATTACCAGACC 58 164727865 164728467 ACTTCTCTTTCCAATCCTCAG 57 NA Rattus norvegicus 81 Dnajc13 ENSRNOG00000011491 ENSRNOT00000015344 1 1 1 80 8 112741910 112741930 AATGAAACTGACCTTGCTACC 59 112740815 112741868 ATTGTCCTGATCCCTGCTC 59 NA Rattus norvegicus 81 Hecw2 ENSRNOG00000013257 ENSRNOT00000017761 2 1 1 80 9 60536141 60536160 TTGCGTCAACCTAACATCCT 60 60520857 60536100 GATCTTCTCCCTGAGTGAGTG 60 NA Rattus norvegicus 81 Manea ENSRNOG00000008626 ENSRNOT00000011576 2 1 1 80 5 40860142 40860160 GGAAGTTACAGCTCCCGAG 60 40856410 40860098 GGCCAGTACTCCAATGGAG 60 NA Rattus norvegicus 81 Hist3h2ba ENSRNOG00000043419 ENSRNOT00000066190 2 1 1 60 10 45289803 45289823 GAAGAAGGGTTCCAAGAAAGC 60 45289845 45289863 TTTGCGTTTCTTGCCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp18 ENSRNOG00000003981 ENSRNOT00000005518 3 1 1 80 10 52336323 52341958 CTACAGGAGGAACAGTGGA 58 52342002 52342020 TTTCCCATAGGTTTCCAGC 57 NA Rattus norvegicus 81 Ubr3 ENSRNOG00000008616 ENSRNOT00000011380 3 1 1 80 3 56192458 56193163 CCACTCCAAATTCAAGCTAGTC 59 56193202 56193222 AGCTTGTCCTTTGATTTGCAG 60 NA Rattus norvegicus 81 AABR07065559.1 ENSRNOG00000052017 ENSRNOT00000078113 2 1 1 192 6 134627648 134627666 GGATTTCTTCAAGCAGGCC 59 134627825 134627843 CTGGTACTTGGTGACCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Commd1 ENSRNOG00000009281 ENSRNOT00000012750 1 1 1 80 14 107728657 107728676 GGCACTCAACTCAAATACAC 57 107664598 107728614 ACAGAAACTCAGATTCCCG 57 NA Rattus norvegicus 81 LOC682831 ENSRNOG00000050041 ENSRNOT00000071500 2 1 1 60 X 60552158 60552176 GTCAGCTCTGCCATTTGTC 59 60552200 60552218 CAAACCCTGGACACATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1868 ENSRNOG00000047298 ENSRNOT00000075472 3 1 1 60 20 1322665 1322683 CTCTTCGGTGACTCTTCCC 60 1322704 1322725 AGATATGGTCCTATGCCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm27 ENSRNOG00000027250 ENSRNOT00000036613 2 1 1 80 18 36646813 36646833 AAGTTACAGCAAGACATGAGG 58 36646872 36647012 TTTAGAGATCAGCATCTTCTGG 58 NA Rattus norvegicus 81 Tmed7 ENSRNOG00000003691 ENSRNOT00000004942 1 1 1 80 18 40583958 40583978 ATTTCCAAGTTGGAGAAGACC 58 40581918 40583917 CACAAGCAGATTCCATCTGG 59 NA Rattus norvegicus 81 Hbq1b ENSRNOG00000028114 ENSRNOT00000035459 2 1 1 81 10 15600508 15600526 GTTCTCTGTCTGCTCTCAG 57 15600337 15600464 AGACAGTGGCTAAAGAACTG 58 NA Rattus norvegicus 81 Fbxw9 ENSRNOG00000004212 ENSRNOT00000005581 1 1 1 80 19 26179459 26179477 CAGGTAGTGAGGACCACAG 59 26179521 26179620 GATAGGAGTCCAGCTGGAG 59 NA Rattus norvegicus 81 Nbeal1 ENSRNOG00000021525 ENSRNOT00000023678 2 1 1 80 9 67025614 67025635 GCCTTGACTTGTCTAGTAACTG 59 67025673 67028099 TGATGATGTCCTTAATGTCCCA 59 NA Rattus norvegicus 81 Eva1a ENSRNOG00000007118 ENSRNOT00000009321 3 1 1 88 4 112802048 112802066 CTTGGAGATGGCTTTGCTC 59 112822375 112822394 CAGAGACAAAGTACAGAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0640.3 ENSRNOG00000051114 ENSRNOT00000076629 2 1 1 70 X 63419188 63419206 GTGGTCAAGAAACAGGAGG 58 63361375 63361393 ATGCCAAAGTTCTTAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 3 1 2 109 2 181899921 181899942 GTAAACTGTACTTCTGGTTGCT 59 181899803 181899851 AGAGATTCAAGGGACAGGA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Arnt2 ENSRNOG00000013017 ENSRNOT00000017636 2 1 1 80 1 146431271 146431289 AGCTTCACCTTCCAGAACC 60 146423173 146431227 CTGCTGAAGTTGCTTGACG 60 NA Rattus norvegicus 81 Dlx4 ENSRNOG00000004399 ENSRNOT00000005807 3 1 1 82 10 82960033 82960051 CAGCATACCCAGTACCTGG 60 82959669 82959989 CAGATCTTTACCTGGGTTTGG 59 NA Rattus norvegicus 81 Lgals4 ENSRNOG00000020338 ENSRNOT00000041205 3 1 1 82 1 87021743 87021761 AAGAAGAGCATGCCTTTCC 58 87021806 87023967 TTTACCACGACCTTGTAGTG 58 NA Rattus norvegicus 81 Grik3 ENSRNOG00000008992 ENSRNOT00000045513 3 1 1 80 5 143693425 143693443 ACATCTGGATGTACGTGCT 59 143693485 143698166 ATTCATAAGGGCTGAATCTGG 58 NA Rattus norvegicus 81 Filip1l ENSRNOG00000001645 ENSRNOT00000046383 1 1 1 80 11 45117232 45123147 AACCCATGAACGAGTTGGA 59 45117170 45117192 CTACCATTAAGAGTTGTTCCACG 60 NA Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 3 2 2 80 17 10469491 10469588 AGAACTATGAGGCTCTCCTG 58 10469631 10469649 GCTCTATGTCTGCTTTGGT 58 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000084560 2 1 3 80 6 29126065 29129539 AGGAAACATACTGCTCTTCG 58 29129580 29129600 TTCTGACTCTGATAACTGACG 57 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000015948 2 1 2 80 1 142422412 142429033 CCCATACATGGGTTTCTGTG 59 142418655 142418674 TTCTCTTCCTTCAGCAGACC 60 NA Rattus norvegicus 81 Rragc ENSRNOG00000017426 ENSRNOT00000023514 1 1 1 80 5 141575121 141576058 TCATTGATGCACAGGATGAC 58 141576101 141576119 CTGGGTTCACTTTGTAGGC 59 NA Rattus norvegicus 81 Eps15l1 ENSRNOG00000013502 ENSRNOT00000018960 2 1 1 80 16 19171815 19172688 CAGTTACAGACCCATTTGGAG 59 19172728 19172748 TCTTGAAGAAGTCATCACTGG 58 NA Rattus norvegicus 81 Fgf17 ENSRNOG00000012912 ENSRNOT00000017723 1 1 1 120 15 52331882 52332076 CCTAACCTTACCCTGTGCT 59 52328899 52328917 TCAGCTGGTCAGTCATAGC 59 NA Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 3 2 2 80 9 11180001 11180020 ACATGAATGATGGGAGGGTG 60 11174730 11179961 ACCCAGATCCATATACTGTGAG 59 NA Rattus norvegicus 81 Thbs3 ENSRNOG00000059903 ENSRNOT00000087934 2 1 1 80 2 188531914 188532648 ATTCACAATGCAGTGACCAG 59 188532855 188532873 GAAGAGTGTGAGCTGAGTG 58 NA Rattus norvegicus 81 Utp6 ENSRNOG00000014209 ENSRNOT00000019044 1 1 1 80 10 67258598 67258616 GATGGTGAACCTGAGGGAG 60 67257294 67258557 ATGTAATCCAGCCAAAGATCAG 59 NA Rattus norvegicus 81 Mcoln1 ENSRNOG00000000975 ENSRNOT00000001290 3 1 1 80 12 2060243 2060261 GGTCTGATGACACCTTTGC 59 2060305 2060407 GTGTCAGGTACTGGTCCAC 60 NA Rattus norvegicus 81 S100a9 ENSRNOG00000011483 ENSRNOT00000015351 2 1 1 98 2 190099757 190100113 TAGCTTTGAGCAAGAAGATGG 58 190099679 190099702 CATACTTCCTAGAGTACTGATGGA 59 NA Rattus norvegicus 81 Gtpbp3 ENSRNOG00000023403 ENSRNOT00000060355 2 1 1 80 16 19899778 19900012 AGTGAATCTGCTCAGCCAG 60 19900055 19900074 ACAGGAGTCTCCAAGATGTC 59 NA Rattus norvegicus 81 Rn60_3_1509.3 ENSRNOG00000043043 ENSRNOT00000068257 3 1 1 64 3 144466145 144466164 TGAGCCATATGGTGGAAGTG 60 144469745 144469763 CAAGATCCTCTCAGCCACC 60 NA DesignNoJunction Rattus norvegicus 81 Haao ENSRNOG00000031263 ENSRNOT00000045996 2 1 1 80 6 7055650 7058155 CAAGCTTATGCACCAGGAG 59 7055588 7055609 CCCTCTTCAATGTGATAATCCT 58 NA Rattus norvegicus 81 AABR07015505.1 ENSRNOG00000055911 ENSRNOT00000064713 3 1 1 60 14 59980146 59980166 GAAGAACTTAAATTGGCCACG 58 59980106 59980124 TGTACACATTCCGGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 3 2 2 80 4 33750805 33750826 GGTCAAATACCATCACTGTACG 59 33750513 33750765 ATCTCAAAGCCTGGGAAGAG 60 NA Rattus norvegicus 81 Ucp3 ENSRNOG00000017716 ENSRNOT00000024005 2 1 1 80 1 165491237 165491256 TGTCAATTGTGCTGAGATGG 59 165491298 165491685 GGGAAGTTGTCAGTGAACAG 59 NA Rattus norvegicus 81 LOC498414 ENSRNOG00000030665 ENSRNOT00000044737 2 1 1 80 14 90823147 90823424 TACCCTACATCCTGTGTCCT 59 90823086 90823106 AAGACGAATGACATTTGCCTG 60 NA Rattus norvegicus 81 Slc35b1 ENSRNOG00000004510 ENSRNOT00000006179 1 1 1 80 10 83204516 83204537 TCATGTATAAGCCCAAGAAGGT 59 83204577 83205763 TCAGAGACAAGAGCAGAAGG 59 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 2 2 2 80 5 36568194 36578039 AGCAGAAGTAAGATGGGAGAC 59 36578081 36578099 CGAGGTTTAAACTGGCGAG 59 NA Rattus norvegicus 81 Megf10 ENSRNOG00000013674 ENSRNOT00000037901 1 1 1 80 18 52361555 52362597 TATGAAGTCGAACCTACAGTCAG 60 52362636 52362655 AAGGTCATATGGGTCTTGGG 59 NA Rattus norvegicus 81 Megf10 ENSRNOG00000013674 ENSRNOT00000037901 3 1 1 80 18 52361556 52362595 ATGAAGTCGAACCTACAGTC 57 52362637 52362656 GAAGGTCATATGGGTCTTGG 58 NA Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217,ENSRNOT00000055194 1 2 2 89 10 89913362 89913380 AGACTTCATTGACCAGGCC 60 89908376 89908394 ATGACTAGCGTTGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr287 ENSRNOG00000018956 ENSRNOT00000025635 3 1 1 60 1 212652046 212652065 GGAAACCTAGCCATCATCTC 58 212652087 212652106 AGTACATGGGTGTCTGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53i11 ENSRNOG00000008738 ENSRNOT00000057001 1 1 1 82 3 82093543 82094619 CCCTTCTTAGCATCTCCCTG 60 82094664 82094682 CTCAGTGAGCAGAGTCCAG 60 NA Rattus norvegicus 81 P2ry10 ENSRNOG00000037839 ENSRNOT00000048695 2 1 1 109 X 78196504 78196524 GAAAGGAATAATGGATGCCAC 57 78207785 78207803 TTACTCTCAACAGTGCTGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_7_1168.2 ENSRNOG00000051155 ENSRNOT00000076207 2 1 1 60 7 116858050 116858070 CATCAAGCACTCAAAGAACAG 58 116858089 116858110 CTTCTGATCATTCTCCTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1168.2 ENSRNOG00000051155 ENSRNOT00000076207 3 1 1 60 7 116858054 116858074 AAGCACTCAAAGAACAGAGAC 59 116858090 116858114 CTTTCTTCTGATCATTCTCCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 3 3 3 80 2 264992511 264994599 ATAATCAGTCCAAGGCCCTC 59 264992450 264992470 ACATGTAGTTGGTCAGTACCC 60 NA Rattus norvegicus 81 LOC690700 ENSRNOG00000046536 ENSRNOT00000072533 1 1 1 80 14 94601463 94601484 GACAAAGAGGTTCTGTGAAGAG 59 94601523 94602084 AATAAGACAGGACCTACCTGC 59 NA Rattus norvegicus 81 LOC690700 ENSRNOG00000046536 ENSRNOT00000072533 2 1 1 80 14 94601467 94601486 AAGAGGTTCTGTGAAGAGGC 60 94601525 94602088 CTCAAATAAGACAGGACCTACCT 59 NA Rattus norvegicus 81 LOC690700 ENSRNOG00000046536 ENSRNOT00000072533 3 1 1 80 14 94601465 94601485 CAAAGAGGTTCTGTGAAGAGG 59 94601524 94602086 CAAATAAGACAGGACCTACCTG 58 NA Rattus norvegicus 81 LOC100911999 ENSRNOG00000059901 ENSRNOT00000072049 2 1 1 60 8 41336420 41336439 GCCCTTATTTGTTCTGTTCC 57 41336460 41336480 TAAGCACAAGTTTCCCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 3 1 1 66 X 65335684 65335864 AAGGTAAGAAGGCCCAAGG 59 65335636 65335654 TGTGGATTCTTGGTAGGGT 58 NA DesignNoJunction Rattus norvegicus 81 Mir743b ENSRNOG00000041260 ENSRNOT00000063013 3 1 1 60 X 151253360 151253378 GACTGGTGTCCATCATGTG 58 151253318 151253341 TGAGCCTTACTCTATTCAGTATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam117a ENSRNOG00000004417 ENSRNOT00000005939 1 1 1 80 10 83192360 83192378 CCTAGAAGGGCTCAACCAG 60 83192421 83194058 ACCTCAAGTATCCTCAGCAG 59 NA Rattus norvegicus 81 Ppp4c ENSRNOG00000019813 ENSRNOT00000026909 3 1 1 80 1 198221388 198221407 TCTTCATGGGAGACTTTGTG 58 198220807 198221347 GATATCGAACCTTAAGAGCCA 57 NA Rattus norvegicus 81 Mvb12a ENSRNOG00000017949 ENSRNOT00000024413 1 1 1 86 16 19973945 19974098 GTATCCCAGAGAACCCTCAG 59 19974147 19974165 CTGTAGAGAAGCCTGGTGG 60 NA Rattus norvegicus 81 LOC100911639 ENSRNOG00000042394 ENSRNOT00000066667 2 1 1 75 X 83598010 83598033 CTGGTGATCGTAGTTTACTAACAG 59 83601214 83601232 ATTGCTCTTTGCCAGTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Kazald1 ENSRNOG00000016058 ENSRNOT00000021553 2 1 1 151 1 264830042 264830147 ATATCTCTGTGCAGTTTAGGG 57 264830260 264830278 TACTGTGAGGGTAGCAGAG 58 NA Rattus norvegicus 81 LOC102553785 ENSRNOG00000025200 ENSRNOT00000036989 2 1 1 81 X 71683318 71683336 GAAACCTGCAGTTCCTGTC 59 71683378 71683867 ACAATTGCATCTTCTTCACCAG 60 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 1 2 2 80 3 111057715 111057960 TCAGTGTTAAGAGAAACCATCC 58 111058000 111058019 TTCTTGTCAGTTGGAACAGG 58 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 2 2 2 80 3 111057716 111057962 CAGTGTTAAGAGAAACCATCCAG 60 111058000 111058020 GTTCTTGTCAGTTGGAACAGG 60 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733,ENSRNOT00000083425 2 2 2 80 1 44061672 44061692 TCGCAGATAACAAACACAGAC 59 44061733 44065719 TAGTTGCTGAAGCTGTTGAC 59 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733,ENSRNOT00000083425 3 2 2 80 1 44083373 44083392 ACAAGATTCATTTCGGGCTC 59 44083434 44084619 GCCCAGGCAATCTTAATGAC 59 NA Rattus norvegicus 81 Fbxw4 ENSRNOG00000046211 ENSRNOT00000072223 2 1 1 80 1 265397045 265400920 TGGAGATACAGTCAGATGCC 59 265396984 265397004 GTAGGCCAGGATGAAATTAGC 59 NA Rattus norvegicus 81 LOC100360791 ENSRNOG00000033517 ENSRNOT00000044222 3 1 1 60 1 20116445 20116464 TACCGTGAAGATGGTGTGAC 60 20116485 20116505 TTTCCATCTCTAAGCCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000077087 3 1 2 243 12 18931540 18931558 TTCCCGGTACGGATAAACC 59 18937643 18937662 CCATCTTGCCTGGATTTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adora2a ENSRNOG00000001302 ENSRNOT00000001759 2 1 1 122 20 14266977 14273835 TTCCACTCCGGTACAATGG 59 14266873 14266891 TCTGACTGCAGTTGTTCCA 59 NA Rattus norvegicus 81 Pyroxd2 ENSRNOG00000015807 ENSRNOT00000021257 1 1 1 80 1 261967340 261967358 CTGAACTGTGAAGACACCC 58 261965824 261967298 AATCATAGGTCTTTGGGAAGG 58 NA Rattus norvegicus 81 Emp3 ENSRNOG00000021104 ENSRNOT00000028656 1 1 1 81 1 101902913 101902931 CTCCTGTTGGTGGTCTCTG 60 101902638 101902868 GAGTCCACCAGGACTTGTC 60 NA Rattus norvegicus 81 Emp3 ENSRNOG00000021104 ENSRNOT00000028656 3 1 1 110 1 101902645 101902875 CACTCTGGACAAGTCCTGG 60 101902553 101902571 TCACTGACGTTACTGCAGG 60 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076754,ENSRNOT00000075125 3 2 5 96 15 10281830 10281848 TGACAGAAGAGAAGCTCGC 60 10281315 10281773 TCAAAGAGTACCATGGAATTGC 59 NA Rattus norvegicus 81 Sec22a ENSRNOG00000043069 ENSRNOT00000063795 1 1 1 95 11 68653707 68672875 GATTTCTTCTGCCCACCAG 59 68672931 68672952 CGAATTAAATTCAGAGCTCCAC 58 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 1 2 2 80 2 164603256 164603274 GGGAAGACGACGTTAACAG 58 164603316 164604898 TCCATCTTTACCTTTCACCTC 57 NA Rattus norvegicus 81 Snx8 ENSRNOG00000001258 ENSRNOT00000001696 1 1 1 80 12 16385124 16385142 ATGTCTACCTGCCTCTCAC 59 16385186 16388196 CCTTGCTCATCTCCTTGTG 58 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000081983 1 1 2 83 1 81080292 81080310 AGCTTCAGTCAGAGTTCGA 58 81080357 81098917 TTTGCCACACTCATCACAC 59 NA Rattus norvegicus 81 LOC102553119 ENSRNOG00000014212 ENSRNOT00000019670 3 1 1 111 9 71311494 71311512 ACGTATCTGGAGATGGGTG 59 71305228 71311419 TAGTCACATGAGCACCCAG 59 NA Rattus norvegicus 81 Tac4 ENSRNOG00000004404 ENSRNOT00000035023 3 1 1 83 10 83087660 83088718 TGTCCATCGAAGGAAGCTG 60 83088764 83088783 GACTCTGGAGGCTTTCTCTG 60 NA Rattus norvegicus 81 Mpzl3 ENSRNOG00000026753 ENSRNOT00000032837 1 1 1 80 8 49361046 49361065 CAGATGTCACTGACAAGCTG 59 49361102 49365360 GATAATGGAAGATAGATTCTGTGCG 60 NA Rattus norvegicus 81 Vsnl1 ENSRNOG00000005345 ENSRNOT00000007609 2 1 1 80 6 37007195 37007216 AACATGTATGATCTGGATGGTG 58 37002606 37007156 CACCATCTTGTAGATAGCCTC 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000058357 1 1 4 80 X 53054456 53054475 CCTGTTACAAAGACGTCTGG 59 53054515 53062534 AAATGGGACCGAATATTGAGAG 58 NA Rattus norvegicus 81 Nudt18 ENSRNOG00000011831 ENSRNOT00000015969 1 1 1 102 15 52266931 52267157 ACCAACAGGTGGAGTTCTC 59 52267223 52267241 ATGAGCTCTAAGCGGTGTG 60 NA Rattus norvegicus 81 Cycs ENSRNOG00000010452 ENSRNOT00000014058 1 1 1 124 4 80332171 80332295 GAACAAAGGTATCACCTGGG 58 80332066 80332084 TTAGGTCTGCCCTTTCTCC 59 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 3 1 1 62 1 88457639 88461514 AAGAACATCGATCTGCGGA 59 88461537 88461558 TTTCATCCTGTGTCCTTATCTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Golt1a ENSRNOG00000002936 ENSRNOT00000080486 2 1 1 96 13 50539191 50539978 TTTGGAAACCTGCTGTTCC 59 50539113 50539131 TTGTTCCCTTGAGCTTGTG 58 NA Rattus norvegicus 81 Mesdc1 ENSRNOG00000012349 ENSRNOT00000016455 2 1 1 60 1 146028484 146028503 TCAGGCTTTAAGGGAAAGGT 59 146028443 146028463 CACAGAATTGGAATTCACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btrc ENSRNOG00000016280 ENSRNOT00000022426 2 1 1 80 1 265247268 265247903 AGACATTGAGACAATAGAGTCC 57 265247944 265247962 TTACTTGTTTCACTCCGGC 58 NA Rattus norvegicus 81 Rn60_5_0814.13 ENSRNOG00000051116 ENSRNOT00000076260 1 1 1 63 5 77898554 77898572 ACCTGAGCAGAGAAACGAG 59 77898509 77898527 CATCGAGGTTGGATTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx31 ENSRNOG00000013040 ENSRNOT00000064323 3 1 1 80 3 7427778 7428589 CCACCCACATCTAATTTCCAC 59 7430096 7430115 ACTGGGATACTCTGCTTCTG 59 NA Rattus norvegicus 81 Magea11 ENSRNOG00000003532 ENSRNOT00000004684 1 1 1 83 X 141848916 141853996 GTGCTTGAAGACCACTCTC 58 141854043 141854061 GATCATGCTTCTGCCTGTG 59 NA InUTR Rattus norvegicus 81 Ebf2 ENSRNOG00000011548 ENSRNOT00000016568 3 1 1 80 15 44083695 44083715 TAGACTATGGCTTCCAAAGAC 57 44083755 44085335 ATAGCATTTCCTTAGCTAGCC 58 NA Rattus norvegicus 81 Ndfip1 ENSRNOG00000013562 ENSRNOT00000018499 1 1 1 89 18 31605827 31605845 AATGTGGCTACAACACTGC 59 31605895 31609909 ATCTTCATCTCTTCCAGGAACC 60 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 3 2 2 88 14 104274950 104274970 GACTTACTTTCCAAAGCCCTG 59 104275015 104277348 GGTTGTTGAACCTTCTATAAGGTC 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 3 2 5 176 2 192553984 192554002 TGTCTTACCAACAGCAGCA 60 192616091 192616109 ATGGTGGAGGAGTTTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Sez6 ENSRNOG00000009350 ENSRNOT00000048543 2 1 1 80 10 64868109 64868127 TCCTTACTTGCCATGATCG 57 64867966 64868067 GTTTGAACTGTTCCAAGAGAC 58 NA Rattus norvegicus 81 RGD1560523 ENSRNOG00000028513 ENSRNOT00000036417 2 1 1 82 13 30493750 30493771 CAGCATGATGAAGAAGTTTGTC 58 30493687 30493708 AGGTACTTTGCTACAACAGC 58 NA Rattus norvegicus 81 Cdh10 ENSRNOG00000009771 ENSRNOT00000013152 3 1 1 80 2 69614261 69614279 GAAGTGGGCACAATCATCG 59 69614318 69619044 GCGATCTAAAGTAAATCTGATGGG 60 NA Rattus norvegicus 81 Ptdss2 ENSRNOG00000015912 ENSRNOT00000021925 2 1 1 80 1 214144657 214144676 TGATGTTCGAGTTCCTGGAG 60 214144719 214144825 CCATGATCCAATGGTCCCA 60 NA Rattus norvegicus 81 AABR07028027.1 ENSRNOG00000021292 ENSRNOT00000033844 3 1 1 80 17 53396976 53396997 CTAAACCAGACCCTTCTGGA 59 53397039 53397058 TCCAAGAAAGCCCATAACCT 59 NA Rattus norvegicus 81 Rn60_15_0537.1 ENSRNOG00000048743 ENSRNOT00000072095 1 1 1 60 15 49953114 49953133 CCCATTTGTCCTTTGATCCA 58 49953155 49953174 ACCATTTCTGAGTTGACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000047385 ENSRNOT00000073777 3 1 1 60 10 35559013 35559033 GAGACTGATTGTCATGTGTCG 59 35559050 35559073 CCAGGTATGGCTATAAAGTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd300a ENSRNOG00000057058 ENSRNOT00000085262 1 1 1 80 10 103446960 103448792 AGTCAAAGCTGATAAGCACC 58 103449204 103449225 AGATTGACATACTGGGATTCAC 58 NA Rattus norvegicus 81 LOC691368 ENSRNOG00000048301 ENSRNOT00000074883 1 1 1 60 3 102511183 102511201 TGAACCCTGCCATTTACAC 58 102511224 102511243 ATCAGTCTTCTCATTGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gml ENSRNOG00000025641 ENSRNOT00000035496 2 1 1 80 7 116056277 116058786 AATCGCTATACGTGTGACCA 59 116056216 116056236 TGCTGTTTGTACACAAAGGAG 59 NA Rattus norvegicus 81 Tagap ENSRNOG00000018915 ENSRNOT00000025580 1 1 1 80 1 47500224 47500242 TCGCTGTTTGATCAACCCT 60 47499636 47500180 GATGGTGAGGATGTCCTGG 60 NA Rattus norvegicus 81 Rhbdl2 ENSRNOG00000026592 ENSRNOT00000034839 3 1 1 116 5 141500689 141500707 AGTCTATGCCTTGATGGGT 58 141502329 141504331 ATGTCTGAGGCAACTATCAG 57 NA Rattus norvegicus 81 Ccdc78 ENSRNOG00000022331 ENSRNOT00000020363 2 1 1 80 10 15156772 15156874 CGGTTGCAGATTTCTAAGGA 58 15156917 15156935 AAAGACTTCAGCCTCATGC 58 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254,ENSRNOT00000085125 1 2 2 80 1 214604686 214604812 GAAGCAGTTGAGCAATCCA 59 214604853 214604874 GCTTTAGTGATTTCTGTGTCCA 59 NA Rattus norvegicus 81 Gpr174 ENSRNOG00000032970 ENSRNOT00000046164 3 1 1 70 X 78372310 78372329 GAGCTTCTATCAGCACTGGA 59 78395312 78395333 ACATTGAAGAAGAGCATGAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Colec10 ENSRNOG00000008591 ENSRNOT00000011379 3 1 1 80 7 93975538 93975556 GGTCTGGATGTTGATGGTC 58 93975597 94005581 ACCATTATCTCCTTTAGGTCCT 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 3 3 4 92 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342961 76342981 GTAGAATCACATCGACACCAG 59 NA Rattus norvegicus 81 Defb41 ENSRNOG00000038760 ENSRNOT00000059213 3 1 1 98 15 46179832 46182132 ATGATGCCGAGAGGAAAGG 60 46182194 46182212 GTCATCTGTGGATGTGCAC 59 NA Rattus norvegicus 81 Cnih3 ENSRNOG00000022724 ENSRNOT00000036705 2 1 1 80 13 99663167 99663185 TGCTTTCTGCTACATGCTG 59 99663228 99714684 TCATCGAAGGCGATTATGTG 58 NA Rattus norvegicus 81 Purb ENSRNOG00000056150 ENSRNOT00000078282 2 1 1 60 14 86738923 86738941 CGCTTAAGAGCGAGTTCCT 60 86738881 86738899 TTCTCCTTGAGGTCCAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454 1 1 3 78 14 47203107 47203268 CCATGGGAAATGCACTTAGTC 59 47203049 47203067 TCTGGTCACTTTCCCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911889 ENSRNOG00000046734 ENSRNOT00000072934 1 1 1 80 4 82373110 82373128 AACTACGTTTCAAGACCGC 59 82373171 82373760 CTGAAACCACACCTTGATGG 59 NA Rattus norvegicus 81 Cryga ENSRNOG00000014790 ENSRNOT00000019963 3 1 1 80 9 71830412 71830430 CTACCCTGACTACCAGCAG 59 71828627 71830369 CTGTGAGAGCTGGTATAGGG 59 NA Rattus norvegicus 81 Hmx1 ENSRNOG00000009154 ENSRNOT00000012304 3 1 1 275 14 80541696 80543980 TCTGAGTCCTGACACAAGC 59 80541439 80541457 AGATCGAAAGTGGACTCGA 58 NA DesignRelaxed Rattus norvegicus 81 Tradd ENSRNOG00000015179 ENSRNOT00000020405 2 1 1 151 19 37215174 37215336 TCAGCTCATAGTGAACCGG 59 37215041 37215059 CATACTCATAGGCCAGCGA 59 NA Rattus norvegicus 81 Tradd ENSRNOG00000015179 ENSRNOT00000020405 3 1 1 151 19 37215175 37215337 GTCAGCTCATAGTGAACCG 58 37215042 37215060 ATACTCATAGGCCAGCGAG 59 NA Rattus norvegicus 81 Iyd ENSRNOG00000016286 ENSRNOT00000021895 1 1 1 80 1 40092604 40093240 CATCAAAGCAGCAGGAACAG 60 40093281 40093301 TTCATGTCTGGGTCCTTTACC 60 NA Rattus norvegicus 81 LOC100125384 ENSRNOG00000045720 ENSRNOT00000074027 1 1 1 60 1 106405231 106405249 TCATGGTTCACGTCAAGAG 58 106405273 106405291 ACCTCCTCAAACTCCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0048.4 ENSRNOG00000048140 ENSRNOT00000071931 1 1 1 62 20 2623331 2623349 TCACTTACAGGGAGCACTG 59 2637496 2637515 GGGTCACATGTACCTTAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Kcnv1 ENSRNOG00000004117 ENSRNOT00000005556 1 1 1 80 7 84022782 84022801 TCCTTTCTTCAGGAGATCCA 58 84021914 84022741 TCTTCTGAAGTATCTGTCCCT 58 NA Rattus norvegicus 81 Gipc3 ENSRNOG00000020593 ENSRNOT00000027951 2 1 1 80 7 11246055 11247212 CCTACTGAGATCCTATTCTGCA 59 11247253 11247271 TTCTAGCCCAATCTGTCCC 59 NA Rattus norvegicus 81 Daw1 ENSRNOG00000016247 ENSRNOT00000068236 1 1 1 80 9 88986594 88986613 CACGGGAAGTATGGATACGA 59 88986656 88989046 GCCAAATGACCGGTTAGAG 59 NA Rattus norvegicus 81 Ppfia3 ENSRNOG00000020731 ENSRNOT00000028142 3 1 1 80 1 101341918 101343648 ACGAGTCTTCCAAGGACTG 59 101341856 101341874 CTGAGCCATCTAGCTCTCC 59 NA Rattus norvegicus 81 Ap2a1 ENSRNOG00000026243 ENSRNOT00000020304 1 1 1 80 1 100897223 100897241 AATCATCCAGACGAAAGCC 58 100897011 100897179 GTTAGGCGGTACATTTGGG 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787,ENSRNOT00000023103 2 2 2 80 4 118208112 118217804 GATGCCCAAGACTCTATACGT 60 118217846 118217864 CCGATCTGGCTAAAGAGCT 59 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450,ENSRNOT00000018440 1 2 2 80 15 52377676 52378178 AGAAATCCTCAAAGCTGTACC 58 52377616 52377635 CTATGAAGACACTCAGCACC 58 NA Rattus norvegicus 81 Olr780 ENSRNOG00000048669 ENSRNOT00000052368 2 1 1 60 3 103140877 103140895 GCTCTTTGTGTTCTCCTCC 58 103140835 103140854 TACGATGAGTGAGTTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppapdc2 ENSRNOG00000015268 ENSRNOT00000020475 3 1 1 60 1 247084768 247084786 CTGATGAACCTGCTCTTCG 58 247084810 247084828 ACCCTTTAATCACAGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310951 ENSRNOG00000016780 ENSRNOT00000022866 1 1 1 81 5 76984457 76996954 ACCGACATCACCAAGATCC 60 76996999 76997017 AGCCGTCACTCTTCTTGAC 60 NA Rattus norvegicus 81 AC139642.1 ENSRNOG00000017710 ENSRNOT00000023814 1 1 1 63 4 118431804 118431822 CAAGCAGAACACAGACAGC 60 118431849 118431868 GACACAATGTGTCTGGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881,ENSRNOT00000022281 1 2 2 80 9 89059777 89059885 AGAAAGCGTAAAGGAACGTG 59 89059716 89059737 TCAAAGTTGATCACCAGTAGAC 58 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502,ENSRNOT00000043433,ENSRNOT00000079044 1 3 3 80 1 197553101 197553119 GAAACTGTCTGGGACAAGC 59 197549851 197553060 CAGTAAATCACCACTTTCTCCT 58 NA Rattus norvegicus 81 Olr831 ENSRNOG00000050429 ENSRNOT00000052024 1 1 1 60 4 148690510 148690531 GCTAGTAGTGAAGGTTTCTCAG 58 148690471 148690489 GAAGAAGTGTGGGATGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566265 ENSRNOG00000002323 ENSRNOT00000003188 2 1 1 80 X 78880530 78880900 TAACAATGGGCAAGGTGAC 58 78880468 78880487 TCTCCAGGTTCATACTCCTC 58 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081304 3 1 7 60 20 2516061 2516082 ACCATCTAAGACTACAGGACAC 59 2516102 2516121 GTACTTAATGCACCCTGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr156 ENSRNOG00000002797 ENSRNOT00000003773 3 1 1 80 11 65348682 65350354 CAACCATTACCGACTCCCA 59 65348620 65348640 GAAAGGTCCAAATAACACCCA 59 NA Rattus norvegicus 81 Il12rb1 ENSRNOG00000019216 ENSRNOT00000025977 2 1 1 81 16 20377470 20377927 ACTATGGAAGGGCAGACAC 59 20377407 20377425 CCAAGTGCTTCTTCACCTG 59 NA Rattus norvegicus 81 Fam131c ENSRNOG00000023008 ENSRNOT00000037202 2 1 1 81 5 159929785 159930304 CTTCCAGCTCCAAGACCTC 60 159930349 159930367 GGCTAGGAGACTGTCATCC 59 NA Rattus norvegicus 81 LOC100910378 ENSRNOG00000047334 ENSRNOT00000071256 1 1 1 60 2 46186159 46186181 GAATATACAGAGACCCATTTCCC 59 46186200 46186219 CCGTGATAACATAGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ska3 ENSRNOG00000021847 ENSRNOT00000032723 3 1 1 81 15 38091433 38092981 AGGATTCAGCATGTGAGCA 59 38091370 38091388 TTCACACCAGGCTCTTGAG 60 NA Rattus norvegicus 81 Oscp1 ENSRNOG00000026978 ENSRNOT00000037246 1 1 1 80 5 144085664 144085683 GTTTCATCCAAGACTCACCA 58 144085724 144086208 AGAGACTCCCGTAGATTTCTG 59 NA Rattus norvegicus 81 Oscp1 ENSRNOG00000026978 ENSRNOT00000037246 3 1 1 80 5 144085657 144085677 ATCAAGGGTTTCATCCAAGAC 58 144085719 144086201 CCCGTAGATTTCTGTCAGC 58 NA Rattus norvegicus 81 Naa16 ENSRNOG00000045863 ENSRNOT00000071805 3 1 1 80 15 61602421 61602441 TGCCATTGACAGTAATAACCC 58 61602018 61602385 GGGAGATTACTGTGATTAGATACAG 59 NA Rattus norvegicus 81 Rab36 ENSRNOG00000001311 ENSRNOT00000001772 3 1 1 80 20 14558644 14558666 GTACTTCAGGACCTAGAGAAGAG 59 14558171 14558609 TACCTCTATTCGTATTAGGTCTCC 59 NA Rattus norvegicus 81 Twist2 ENSRNOG00000020355 ENSRNOT00000027597 1 1 1 289 9 98924515 98924534 AATAAGATGACCAGCTGCAG 58 98967980 98967998 AAGGATGTGAACCTGGCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 3 2 2 89 7 67341727 67344075 TTTCATCTGGACCGATTCAG 58 67341657 67341675 ATGTATATCCACGGGTTGC 57 NA Rattus norvegicus 81 Il18bp ENSRNOG00000020150 ENSRNOT00000027301 1 1 1 80 1 167091993 167092013 AACTTCTCCTGTCTGTTTGTG 59 167091753 167091951 CTTCAATCCATCCCAGAGC 58 NA Rattus norvegicus 81 Il18bp ENSRNOG00000020150 ENSRNOT00000027301 3 1 1 80 1 167091993 167092014 CAACTTCTCCTGTCTGTTTGTG 60 167091754 167091953 TTCAATCCATCCCAGAGCTG 60 NA Rattus norvegicus 81 Col1a1 ENSRNOG00000003897 ENSRNOT00000005311 2 1 1 80 10 82760001 82760104 GATAGTGGTCCTGCTGGTC 60 82760148 82760166 GCTGAAGTCATAACCACCG 59 NA Rattus norvegicus 81 Scgb3a2 ENSRNOG00000026912 ENSRNOT00000037796 3 1 1 81 18 38292912 38295129 GTGGTTATTCTGCCACTGC 59 38295172 38295192 AGGTTGTCCAAAGGTAAAGGT 60 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233,ENSRNOT00000089126 3 2 2 80 8 65761917 65763987 CAGATTCACAGTGTACATCACC 59 65764027 65764046 GTAAAGACAACTCCAGAGGC 58 NA Rattus norvegicus 81 Vom1r95 ENSRNOG00000048956 ENSRNOT00000072082 1 1 1 60 4 121822706 121822724 ATAGGCATCGGGATCTCAG 58 121822664 121822684 GAATGAACATGAAGGTGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprasp1 ENSRNOG00000049985 ENSRNOT00000073661 1 1 1 80 X 106307716 106307734 AGGTCTGCTTTAAGGCTGG 60 106307777 106308485 TCACCAACCTCCAAGATCTG 60 NA InUTR Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761,ENSRNOT00000080533,ENSRNOT00000082876 2 4 4 80 3 112263896 112263914 AGCTTTGTGGACAAAGACG 59 112263953 112264722 GTCATCATATGACATCCAGAACTC 59 NA Rattus norvegicus 81 H6pd ENSRNOG00000017523 ENSRNOT00000023543 3 1 1 98 5 167003391 167003410 CCAGTACCAGGCCTATAGTG 59 167002289 167003330 ATGTGGACAAGGACACCTG 60 NA Rattus norvegicus 81 LOC680441 ENSRNOG00000033439 ENSRNOT00000051510 3 1 1 60 4 148361907 148361928 TGATGTGGCTAAAGTCAATACC 59 148361868 148361888 GCGAACATACACCTTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fasn ENSRNOG00000045636 ENSRNOT00000073321 2 1 1 80 10 109989734 109989935 CATAGCAAGGTGCTAGAGG 57 109989672 109989691 TCTAGTGATGAGGTCCACAG 58 NA Rattus norvegicus 81 Gtpbp4 ENSRNOG00000016217 ENSRNOT00000074389 1 1 1 80 17 63139275 63139293 GCCCTATGCATTTACCACC 59 63124684 63139232 GGAGTATCTACAACCTGCCA 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 1 2 4 80 2 9456253 9456272 AATTGGCTTTCTTAGCAACC 57 9455314 9456211 TGCAAGGGAATAGATACCAC 57 NA Rattus norvegicus 81 Pex10 ENSRNOG00000024012 ENSRNOT00000036819 3 1 1 86 5 172472103 172473132 GGCAGGGATCACTTATCTCC 60 172473181 172473199 GAGATGAGTCCCAGCAGTC 60 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152,ENSRNOT00000003255 1 2 2 80 11 66806222 66806242 AGAATTGAAGACACAAGGAGG 58 66804357 66806183 GTTGAACTCTTATCATGCTTGG 58 NA Rattus norvegicus 81 Farp2 ENSRNOG00000018051 ENSRNOT00000024440 2 1 1 80 9 100723044 100723065 GGAAGAACTCAGAAACAACTGG 60 100723106 100724044 CTTACTGTGCCGTCTTTCG 59 NA Rattus norvegicus 81 Pex13 ENSRNOG00000054896 ENSRNOT00000081405 2 1 1 80 14 108396107 108401923 AGCGATGAAGTAACAGACAG 58 108396046 108396064 GGCAAAGTCGTATTCTGCT 58 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625,ENSRNOT00000003512 2 2 2 80 X 82665819 82665837 GTTGCGACTTCTATCGCAG 59 82665362 82665778 TCCATTTATCTGAACGATTGGC 59 NA Rattus norvegicus 81 Fbxo28 ENSRNOG00000000066 ENSRNOT00000000074 3 1 1 80 13 100724767 100724787 GCTGTCACTGTTAAACATGAC 58 100716681 100724726 TCATCAATCACCTTTCCTGG 58 NA Rattus norvegicus 81 Lrrc61 ENSRNOG00000008234 ENSRNOT00000010864 2 1 1 93 4 78187267 78188679 TCACGTGAGGTATCACTGG 59 78188736 78188754 GTGAGCAGCTCTAGGAGTG 60 NA InUTR Rattus norvegicus 81 AABR07066416.1 ENSRNOG00000031939 ENSRNOT00000043269 3 1 1 80 9 8631956 8632005 ATATGCAACTTCACGAAGGC 59 8631895 8631914 TTTGAGTTCCTCCAGTTCCT 59 NA Rattus norvegicus 81 Iglon5 ENSRNOG00000017918 ENSRNOT00000024150 2 1 1 80 1 98450017 98450035 CAGAGTCTGGAGTTCAGCT 59 98450079 98450919 ATCAATGAAGCAGCTGAGG 58 NA Rattus norvegicus 81 Hoxb3 ENSRNOG00000008313 ENSRNOT00000011027 1 1 1 211 10 84193592 84193610 AAGAGTCAAGGCAAACGTC 58 84194614 84194632 CTCCTTCTCCAGCTCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Cst13 ENSRNOG00000005103 ENSRNOT00000006850 2 1 1 80 3 143156180 143156198 AGAATACAACAAGGCCAGC 58 143156242 143160554 CTGTCTGTGATCTGCTCCT 59 NA Rattus norvegicus 81 Sap30l ENSRNOG00000002575 ENSRNOT00000003473 3 1 1 82 10 43229943 43231490 AGCTAGCAGAGACTGTGAG 59 43231533 43231554 CACCATGTAGATGAAATAGGCA 58 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 3 2 2 109 4 7109883 7110526 GATAGAACAACTGCAGGCTC 59 7109793 7109812 GAGAGTGTGGAATGAATGGG 58 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 1 2 2 80 8 97454816 97457083 TCTACTCCAGTAACTCCTGTC 58 97457124 97457143 CATTCTGTTCTCCATAGCCA 57 NA Rattus norvegicus 81 Pla2g2d ENSRNOG00000016826 ENSRNOT00000022579 1 1 1 83 5 157222686 157225545 CTGCTGGCTGGTATAACTG 58 157225592 157225610 GAAGGCTTTCTTCCCAGTC 58 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 2 2 2 65 5 90339038 90348626 CATACCTCGAAATGCTGGTG 59 90348654 90348672 GATCTTGCAACCATGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Mir3562 ENSRNOG00000047717 ENSRNOT00000070927 1 1 1 60 10 109246788 109246806 GGACTCACAGCCCTATCTC 59 109246746 109246764 TGGATCTCAGGCTCTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910611 ENSRNOG00000049059 ENSRNOT00000072914 1 1 1 81 1 82934193 82935518 CTGCTCAGATATGCTGACC 58 82935563 82935581 TTTCCACTCAACTGCTGTC 58 NA Rattus norvegicus 81 Armcx6 ENSRNOG00000037707 ENSRNOT00000029807 2 1 1 84 X 105567855 105567873 CTCCGTGGAGGGAATACAG 59 105567454 105567811 CTGTGATTCTTGTGGTGAATCTC 60 NA InUTR Rattus norvegicus 81 LOC685157 ENSRNOG00000047079 ENSRNOT00000065873 1 1 1 80 12 20276084 20276103 CTTCCTGAACAGAATCTGGC 59 20275728 20276043 TAATGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 3 1 1 65 15 82081335 82081354 AATGAACAAGCCAGTGAGGA 60 82081288 82081307 AAATGGTTGGCAGAGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994,ENSRNOT00000039354 2 2 2 80 19 25841444 25841463 ACTTAAGTTTCCAGGACTGC 58 25841034 25841401 CAACAGGAGTCTGTGACAC 58 NA Rattus norvegicus 81 AABR07066753.1 ENSRNOG00000032086 ENSRNOT00000040323 2 1 1 70 9 14779789 14779808 ATACCTGCTCTCCTCAATGC 60 14780082 14780100 GAAGTACCTCTGGGTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 2 1 1 94 10 13073544 13073676 GTCTTGTCAACACCCTTGG 59 13073468 13073486 TGCAGTGTAACCCATCAGG 60 NA DesignNoJunction Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000021167 2 1 2 81 4 117584814 117589368 CCTAGTAGTTGAGGGTTCAGG 59 117584753 117584771 GAGCCATGGGAGACTTCTG 60 NA InUTR Rattus norvegicus 81 LOC100911148 ENSRNOG00000046157 ENSRNOT00000065898 3 1 1 113 1 147081448 147081466 AGTAACATCCAAGCCCAGG 59 147081627 147081645 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Thap3 ENSRNOG00000026840 ENSRNOT00000055487 2 1 1 81 5 169156257 169156275 CTCAGGGAGGAACATGGAC 60 169155937 169156213 ATCTGGTAACACCTGTTGCA 60 NA Rattus norvegicus 81 Gfod2 ENSRNOG00000017953 ENSRNOT00000024197 3 1 1 80 19 37695094 37695112 AGATGTAGACCTGGTTTGC 57 37684257 37695051 TTCTTCCCAATTCCTAGAGC 57 NA Rattus norvegicus 81 Rn60_14_0967.1 ENSRNOG00000051064 ENSRNOT00000076252 1 1 1 60 14 96896134 96896154 AACTCCTTTGCAAACATGGTC 60 96896094 96896112 TTGGTGTTGTTAGTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0967.1 ENSRNOG00000051064 ENSRNOT00000076252 3 1 1 60 14 96896150 96896169 AAGACGTCCTCAATCAACTC 58 96896109 96896128 GCTGTGATGTCTTCAGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo10 ENSRNOG00000012634 ENSRNOT00000016875 2 1 1 80 5 60606435 60606455 GCTGGCAACAATATTTACCAC 58 60602123 60606394 CTGGTTACACAGGATGAGTG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070,ENSRNOT00000078463,ENSRNOT00000089905,ENSRNOT00000058735 3 4 11 81 6 99150446 99150466 CGAGAAGAAACTCAAACAGCT 59 99150509 99151182 AGAAGCGTCTGGATTCAGG 60 NA Rattus norvegicus 81 Gle1 ENSRNOG00000015237 ENSRNOT00000020630 3 1 1 80 3 8522357 8522375 TCATGAAGCAGTACCAGGT 58 8522419 8525939 TGATGGCTTCAATTCTGGG 58 NA Rattus norvegicus 81 Fahd1 ENSRNOG00000014727 ENSRNOT00000019767 2 1 1 60 10 14215126 14215144 AATGATGAGATCGAGGCCG 60 14215084 14215102 ACCTTTCCACCTTGAACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000006519,ENSRNOT00000080714 2 2 2 80 10 104388131 104389766 GCTGTCAAACTATATGGTGCC 60 104389807 104389826 GAAGTGGATCTGCAACACAG 59 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 2 2 2 80 2 78005754 78005775 CCTTAATGGCAACACTAAGCTC 60 78005816 78034060 ACTGGTCTGGCATCTTCTG 59 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022428 2 1 3 80 3 150064779 150064800 AAATGGTCATAGTGATCAAGGC 59 150064627 150064743 TAAGGGAGATCTGAAATGTCTCTG 60 NA Rattus norvegicus 81 Tex30 ENSRNOG00000011658 ENSRNOT00000015600 1 1 1 81 9 50868151 50868169 TCGAGCGTGTTAGTTAGCT 59 50867701 50868106 AAACCCAATTCAGCGAACG 60 NA InUTR Rattus norvegicus 81 Olr406 ENSRNOG00000046849 ENSRNOT00000072630 1 1 1 60 3 16183727 16183748 ATGAATGAGAACCTCTGTTTCC 59 16183767 16183787 AATTCGCAGTAGATAAGACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mipol1 ENSRNOG00000009151 ENSRNOT00000012282 1 1 1 80 6 78475360 78475379 TGCTCCTCAATCTTTCTGGT 59 78475420 78499348 CAACCTTTCTAACATCAGCCA 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424,ENSRNOT00000090009 2 2 2 80 15 84446917 84446938 CCAAATGTGACCTTAGATAGCG 59 84396793 84446877 TGGATGGACCTCTTGTACTG 59 NA Rattus norvegicus 81 Rsb66 ENSRNOG00000012697 ENSRNOT00000017004 3 1 1 81 3 7270827 7271400 ATCCTCAGAGCAAAGTACCC 59 7270765 7270783 TGACCACACCTCCATAGTG 59 NA Rattus norvegicus 81 Cpped1 ENSRNOG00000015118 ENSRNOT00000045047 2 1 1 83 10 3735507 3773588 TTCACCAGAGCAGGTATCC 59 3773634 3773653 CACCATGTCAAGATTCTGGT 58 NA Rattus norvegicus 81 Adamts18 ENSRNOG00000011575 ENSRNOT00000015874 1 1 1 80 19 46062232 46062615 AAAGCCAACGAGTATTATCCTG 59 46062173 46062191 GGAAGAAAGCTCCAACTCC 58 NA Rattus norvegicus 81 Adamts18 ENSRNOG00000011575 ENSRNOT00000015874 3 1 1 80 19 46062233 46062616 CAAAGCCAACGAGTATTATCCT 59 46062174 46062193 GAAGAAAGCTCCAACTCCTG 59 NA Rattus norvegicus 81 AC107531.3 ENSRNOG00000059786 ENSRNOT00000015108 2 1 1 80 1 168715708 168716023 TTCACTGGCTCTTTAAGGGA 59 168716065 168716084 GTCTGTTTCCTTCAGGTTCC 59 NA Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 3 1 1 77 7 116633699 116633831 AACTGACACAGGTGTCCTG 60 116633872 116633890 CTGTCCACTGTCTTCACGA 59 NA DesignNoJunction Rattus norvegicus 81 Uba5 ENSRNOG00000011027 ENSRNOT00000015240 1 1 1 80 8 112591294 112591312 TAGGTGTTGGTGGAGTTGG 59 112588226 112591256 CATAGTCAAAGAGTAGCAACTTACC 60 NA Rattus norvegicus 81 Zfp691 ENSRNOG00000007398 ENSRNOT00000009691 2 1 1 60 5 138218606 138218624 GTGAGAGGCCTTACGAGTG 60 138218564 138218584 CCAAAGTTGGAGATGTCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd3d ENSRNOG00000015994 ENSRNOT00000021488 2 1 1 82 8 49285724 49285748 GATGTATATGTGTAATGGGACAGAG 59 49285788 49286216 CACAGTTCTGGCACATTCG 60 NA Rattus norvegicus 81 Pdk4 ENSRNOG00000009565 ENSRNOT00000012760 2 1 1 80 4 30553030 30553049 ACTCAAAGACAGGAAACCCA 59 30552525 30552989 CAAAGGCATCTTCGACTACTG 59 NA Rattus norvegicus 81 Rn60_5_0814.24 ENSRNOG00000051211 ENSRNOT00000076017 2 1 1 85 5 77481370 77482096 ACTTGATGGGAAATCAAGATCC 59 77481306 77481324 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Krt80 ENSRNOG00000025994 ENSRNOT00000029697 2 1 1 80 7 143004522 143004541 CTGGAAACCAAACTCAAGGG 59 142998275 143004481 TGTAAGGTCTTTCAGCTCCTG 60 NA Rattus norvegicus 81 Dirc2 ENSRNOG00000002240 ENSRNOT00000003048 3 1 1 80 11 68251971 68265442 CTTTGACAACAGTGACACTG 57 68265483 68265503 GCTCAAAGAATATAGGAACGC 57 NA Rattus norvegicus 81 AABR07000747.1 ENSRNOG00000054246 ENSRNOT00000074143 3 1 1 82 1 24981967 24982454 ATCCATGAAGAACAGGCCA 59 24981903 24981921 GAATTGACATGACCGCCTC 59 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 3 2 2 80 7 23818970 23820424 CTTTCACACGACAAGTGCT 59 23818908 23818927 GGAAGATGCGTAGTTTCAGC 59 NA Rattus norvegicus 81 AABR07003616.1 ENSRNOG00000038697 ENSRNOT00000035149 3 1 1 60 1 116919137 116919158 GAACAAGTTAACACTCTTGCTG 58 116919098 116919118 AACTCTTCTTGCATTGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nadk2 ENSRNOG00000054157 ENSRNOT00000083799 2 1 1 81 2 58475191 58475985 TGATAGCTTACGGGATGAAGG 60 58476028 58476046 ATCTGCCCATCGAACAGTC 60 NA Rattus norvegicus 81 Ssc5d ENSRNOG00000016687 ENSRNOT00000022480 3 1 1 80 1 72451229 72451247 CTTCCTGGGCTACTACCAC 59 72446014 72451188 AACTACCCTGGTCATCTATGTC 59 NA Rattus norvegicus 81 Adra2b ENSRNOG00000013887 ENSRNOT00000018584 3 1 1 60 3 119806505 119806523 TGGCTACTCTCATCATCCC 58 119806547 119806565 CAGAAGTACCAGTAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srfbp1 ENSRNOG00000014808 ENSRNOT00000020030 3 1 1 87 18 47475652 47475670 TAAGCTGATTCCAGAAGCC 57 47475721 47476802 TTCTCTGGGATCCCTTCTG 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 2 2 2 80 13 98348905 98351523 ACTAGTAGCTGTGTTCTTTCTG 58 98351563 98351582 GACATTGACGTCAAGATCCA 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 3 2 2 80 13 98446638 98446656 CTCTTTGTCATCAGGAGGC 58 98446699 98447064 CTTGGAGAATCAGAGTCCTC 57 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 2 1 1 195 14 78973717 78973735 TAGAGGCCTCTGAGGAGAG 59 78973893 78974161 GAATCCATTGGCTGGAAACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Crybb3 ENSRNOG00000047673 ENSRNOT00000071328 2 1 1 125 12 49565993 49566012 TGGTTCTCCTCCAGTTTGAG 59 49566100 49566750 TACACCGTCACCTTGTAGC 59 NA InUTR Rattus norvegicus 81 Nrros ENSRNOG00000001752 ENSRNOT00000050364 2 1 1 107 11 71884243 71884261 GATTGTGGAATGGAGGAGC 58 71887708 71887726 ACTGAAGCGAGGTTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109,ENSRNOT00000048141 2 2 2 80 3 112430734 112433021 GTCAGGAATGTAAAGGTGAACAG 60 112433059 112433079 GTAATCAAAGCCAAATGCCAC 59 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340,ENSRNOT00000030324 2 2 2 80 1 219379110 219379202 TAGTCCCAGGAGTCTACCA 58 219379246 219379264 AGGGCAGGTAGAAGAACTG 59 NA Rattus norvegicus 81 Mrm1 ENSRNOG00000027901 ENSRNOT00000030885 1 1 1 80 10 72138529 72138691 GGCTACAGGAATTCTTCTACAC 59 72138470 72138488 TCTTGGAGACGTTGTCCTC 59 NA Rattus norvegicus 81 Mrm1 ENSRNOG00000027901 ENSRNOT00000030885 2 1 1 81 10 72138529 72138691 GGCTACAGGAATTCTTCTACAC 59 72138469 72138487 GTCTTGGAGACGTTGTCCT 59 NA Rattus norvegicus 81 Lifr ENSRNOG00000011696 ENSRNOT00000016036 2 1 1 80 2 56474274 56474294 TGTTCTTCCGAAACTTTCTGG 59 56474335 56474655 CTTTGAAGGAGTGGCTTCAG 59 NA Rattus norvegicus 81 Rsad2 ENSRNOG00000007539 ENSRNOT00000010092 2 1 1 80 6 45668782 45668800 CAAGACATCCTTCGTGCTG 59 45667238 45668740 TTGATCTTCTCCATACCAGCC 60 NA Rattus norvegicus 81 Alox5ap ENSRNOG00000000907 ENSRNOT00000001207 2 1 1 100 12 6871252 6871270 AAGGTGGAGCTTGAAAGCA 60 6863839 6871188 TCTACGCAGTTCTGGTTGG 60 NA Rattus norvegicus 81 Adss ENSRNOG00000004481 ENSRNOT00000005961 3 1 1 80 13 95919333 95919352 TTTACGGAGATCAAAGTCGG 58 95917930 95919292 TAAGACTTCTTGGTTTGCTGG 59 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 3 3 3 82 3 93926472 93930914 CAGGCGAGACTATCTCAGG 59 93930960 93930978 TCGTCATCTCATAGGCACG 59 NA DesignNoJunction Rattus norvegicus 81 Kcna1 ENSRNOG00000019750 ENSRNOT00000026731 3 1 1 60 4 159191113 159191133 TACATGGAGATCGAAGAGGAC 59 159191073 159191094 TGATATTAGCCTGCCTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 1 1 1 64 12 12330327 12330345 TATCCTGCCAACTCCATCG 59 12322626 12330299 TATTCCAGGACACCAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252,ENSRNOT00000082160 3 2 2 82 10 83097338 83098166 CCATCAAAGAAATTAGCCAGG 57 83097276 83097295 ATACTTGAGCATCTGAAGGG 57 NA Rattus norvegicus 81 Med4 ENSRNOG00000017170 ENSRNOT00000023195 2 1 1 81 15 55415522 55415541 ATCCTTCTACCAGTGGTGTG 59 55415585 55416161 TGTGGAGCAAGGACATCTG 60 NA Rattus norvegicus 81 Olr760 ENSRNOG00000027004 ENSRNOT00000030909 1 1 1 60 3 102671476 102671495 TGGACAAATTTCTTGCTGTG 57 102671435 102671454 TAAATGGCTGGGTTTAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsc ENSRNOG00000016496 ENSRNOT00000022342 2 1 1 80 1 151918808 151921178 CTCGGTAATGGAACCAACAG 59 151921218 151921239 GAATTGCCCACTTCATCATAGG 60 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 2 2 2 80 8 67741612 67742497 CTTCTGCTAAAGCTGATGGAG 59 67742536 67742557 CATGATGAATGTGATGATGCTG 58 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000047561 ENSRNOT00000073975 1 1 1 60 4 170812701 170812722 GCTTCGGGATATTAAGGAAAGG 59 170812662 170812681 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb6 ENSRNOG00000024539 ENSRNOT00000029712 3 1 1 81 5 56575207 56575226 ACGTCAAATATCATGTGGCT 58 56567306 56569035 TCCAGAATTGTATCACCTGG 57 NA Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 1 2 2 80 13 98056611 98056631 CTTAGCAACCTCAGTACAGTC 58 98055881 98056570 GTTCAAGTCCACAAGTCCTC 59 NA Rattus norvegicus 81 Olr237 ENSRNOG00000046456 ENSRNOT00000046903 2 1 1 60 1 172058339 172058360 CCTAAGTCTAGTTACTCCACAG 57 172058300 172058318 TCACCACCATGTAGAACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r41 ENSRNOG00000028804 ENSRNOT00000041780 3 1 1 89 1 149440118 149441409 TTCAAATGCTTTACTTCGGGC 60 149440049 149440070 ATGTGTCCTTAGGAGTCATCTG 59 NA Rattus norvegicus 81 Olr768 ENSRNOG00000047849 ENSRNOT00000050334 2 1 1 60 3 102801926 102801946 CTACTTCACCATCATGAACCT 58 102801886 102801906 AATTGTCCAGGAAGTCAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3k ENSRNOG00000017843 ENSRNOT00000024096 2 1 1 94 3 177376274 177378315 TCTACTGCAGAGCCATGTC 59 177378372 177378391 TAGAAGGTGGTCATTGGCTC 60 NA Rattus norvegicus 81 Tas2r113 ENSRNOG00000030752 ENSRNOT00000050409 1 1 1 60 4 167088182 167088202 GAAACTGTAGATTGAGGTGGG 59 167088142 167088160 TTGAACCTGTACCTGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7a1 ENSRNOG00000035632 ENSRNOT00000053755 3 1 1 60 17 16417858 16417877 TGTGGGATGAGGTAGTAGGT 59 16417899 16417918 TAGTTATCTCCCAGTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989,ENSRNOT00000073865,ENSRNOT00000063883 2 3 3 80 11 71056784 71056803 AGCTTGTAAGATTGCTCCAG 58 71047451 71056743 GAGTACAGTTCTTCATGGCAG 59 NA Rattus norvegicus 81 Ago4 ENSRNOG00000025596 ENSRNOT00000035373 3 1 1 80 5 144535003 144535023 CTGAAATACTCCCATCTTCCC 58 144534462 144534964 TATATTACAGACCTCAAGTGGC 58 NA Rattus norvegicus 81 Hacd3 ENSRNOG00000030232 ENSRNOT00000041915 1 1 1 80 8 70490021 70492653 CTGCATTTCAAAGCTCAGG 57 70489959 70489979 CTTCACGAGGTCTAAGAACTC 58 NA Rattus norvegicus 81 Arhgap32 ENSRNOG00000008709 ENSRNOT00000011589 2 1 1 80 8 33277894 33278768 CATGTGAAGAAGTCCACCC 58 33279143 33279161 TGGAAAGTGTCCCTTTGTG 58 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000086944 3 1 2 89 1 173759386 173764106 AGAGGACGTTCGTAGTTCC 59 173759315 173759335 TTACATTCAGGAGTGAAGCAC 58 NA InUTR Rattus norvegicus 81 Ebag9 ENSRNOG00000004220 ENSRNOT00000005705 2 1 1 80 7 83569544 83572527 TTAATATGCAGATCTGGCAGAG 58 83572565 83572586 GACAGACGAATAATCAACTGTG 58 NA Rattus norvegicus 81 Unk ENSRNOG00000006600 ENSRNOT00000009733 1 1 1 80 10 104601970 104601989 TATGCCTGTCCCTACTACCA 60 104602032 104602563 TGGACATGGAGATGACCTG 59 NA Rattus norvegicus 81 Diaph1 ENSRNOG00000019688 ENSRNOT00000060432 1 1 1 80 18 30985773 30986089 GAGTCTATGATCCAGAACCTC 57 30985713 30985732 GTACTCCTCCTTCAGTTCAG 57 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043,ENSRNOT00000015840 3 2 2 80 5 169574715 169574825 TGTTCCACAAGATAGGAGTAGG 59 169574656 169574674 TGCCACTGTCATACTTCCC 59 NA Rattus norvegicus 81 Hcar2 ENSRNOG00000026653 ENSRNOT00000032249 2 1 1 60 12 38161245 38161264 GGAACTGTGACATCTACTCC 58 38161286 38161305 TAGGTAAAGCTAAGGGTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msantd4 ENSRNOG00000022245 ENSRNOT00000034482 1 1 1 80 8 1510815 1510835 ATGCTGGAGGATCCTTAACAG 60 1510875 1511488 CCTCCTCAATCTCAAATTCGG 59 NA Rattus norvegicus 81 Vwa3a ENSRNOG00000025110 ENSRNOT00000036175 3 1 1 80 1 190731657 190732992 AGAGATCAATGGAGTAGTGAGAC 59 190733032 190733050 ATCACCTTCTCCAAGCCTG 59 NA Rattus norvegicus 81 Pygo2 ENSRNOG00000020663 ENSRNOT00000028052 1 1 1 80 2 188758207 188759660 CCAATACTCAGGGTCCTGC 60 188759704 188759722 AAGCGACCAGATGATCCAC 60 NA Rattus norvegicus 81 Pygo2 ENSRNOG00000020663 ENSRNOT00000028052 2 1 1 80 2 188758208 188759661 CAATACTCAGGGTCCTGCA 59 188759705 188759723 GAAGCGACCAGATGATCCA 60 NA Rattus norvegicus 81 Tmprss13 ENSRNOG00000016397 ENSRNOT00000021949 3 1 1 82 8 49646419 49648270 AACAGATGAGAAGACATCTCC 57 49648313 49648332 AGACCAAGTAGTCATTGCAC 58 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000045978 ENSRNOT00000074526 1 1 1 60 4 170145157 170145175 ATTACCAAGCCCGCTATCC 60 170145115 170145133 GACCTGAGATACGCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690251 ENSRNOG00000048136 ENSRNOT00000075655 3 1 1 80 11 72912971 72912989 ATTTGCTGACTGAAGCCAG 59 72913030 72914434 GTGGAATACACTTTGTAACAGC 58 NA Rattus norvegicus 81 Man2b2 ENSRNOG00000061779 ENSRNOT00000078562 3 1 1 80 14 78948145 78949783 CCTTTCTCTAACAGGTCTGGA 59 78949824 78949843 GTTAGGATACACGCCATCTG 58 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000051498 3 1 2 80 2 241445529 241445547 GCCAATGATGATCTTGCCA 59 241442382 241445486 AAACTCCTGTTAAGGACTGC 58 NA Rattus norvegicus 81 Pipox ENSRNOG00000008798 ENSRNOT00000012154 1 1 1 80 10 64963894 64963914 AGCACTTTATTCTTGACTGCC 59 64963954 64964234 CCAACTTGAATCCATGACCAG 59 NA Rattus norvegicus 81 Senp5 ENSRNOG00000024794 ENSRNOT00000034757 2 1 1 80 11 72049292 72049313 TCAGAATTGGTTGAATGACCAG 59 72049538 72053610 AAGAAGTGGACCTTGTCGG 60 NA Rattus norvegicus 81 RGD1564606 ENSRNOG00000029670 ENSRNOT00000048598 3 1 1 60 2 38231162 38231180 GCATATGTTCGCTTGGCTC 60 38231204 38231222 TGATCCCAATCTTGTTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 1 2 2 80 18 40096771 40100831 AAGAAACAGAGTGCAATGGA 58 40096710 40096731 TGTCTTCCAGGATTTCAAAGAG 58 NA Rattus norvegicus 81 AABR07016939.1 ENSRNOG00000040007 ENSRNOT00000046644 1 1 1 87 15 5323881 5323901 AGTGGAACAGTCCATTAAGGA 59 5323950 5324130 AATTTCTTGCCTGAGGCAG 58 NA Rattus norvegicus 81 Gemin5 ENSRNOG00000002645 ENSRNOT00000044299 1 1 1 80 10 43598143 43598163 GATGGGACTGTGAAGATTTGG 59 43596408 43598104 TGCTGATATTGTATGCTGATGG 59 NA Rattus norvegicus 81 Ildr1 ENSRNOG00000002289 ENSRNOT00000003137 1 1 1 80 11 67021124 67022197 TACTTCTCTGCCTCATACCA 58 67021063 67021082 AACTTCCCTCTGATTGTCAC 58 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 1 2 2 80 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109744 143109998 TTTATCTCCTCACACTTGGTG 58 NA Rattus norvegicus 81 Sh3tc2 ENSRNOG00000019305 ENSRNOT00000026174 1 1 1 80 18 57298044 57301094 CATGCACTGTTTAAGGATCTC 57 57301136 57301154 GGTCTTGAAGGTGATGAGG 58 NA Rattus norvegicus 81 Npm2 ENSRNOG00000025638 ENSRNOT00000032832 1 1 1 80 15 52340748 52341959 GGCCAGGAATGTTATGAGAC 59 52340687 52340708 ATCTTCATCCTCTTCCTCTTCC 59 NA Rattus norvegicus 81 Naprt1 ENSRNOG00000007939 ENSRNOT00000010637 1 1 1 80 7 116923812 116923924 CTGTGTCTACAAGCTGGTG 58 116923750 116923769 CCTGGCAGTATTCTCTTCTG 58 NA Rattus norvegicus 81 Ccne2 ENSRNOG00000008055 ENSRNOT00000010696 2 1 1 80 5 24440147 24440829 TCCAAACTTGAGGAAATCTACG 59 24440867 24440888 GATATCTACTTCACTGCAAGCA 58 NA Rattus norvegicus 81 B4galt1 ENSRNOG00000059461 ENSRNOT00000090499 1 1 1 80 5 57128475 57139100 CATCAATCAGGCTGGAGAC 58 57128413 57128432 TCATAGTCTTTCAAGGCCTC 57 NA Rattus norvegicus 81 Tpsb2 ENSRNOG00000018611 ENSRNOT00000025220 3 1 1 90 10 14723661 14723820 GATAGTGACGAGCCTCTCC 59 14723873 14723892 TGTGGTACTTCCGATCACAC 60 NA Rattus norvegicus 81 Lgals5 ENSRNOG00000012557 ENSRNOT00000016897 3 1 1 80 10 66226553 66228676 CCAGAGATTCTCAGTGTGGA 59 66226492 66226513 CGGTATTCACAAATATGCTGAC 58 NA Rattus norvegicus 81 Ccbl1 ENSRNOG00000016097 ENSRNOT00000021865 3 1 1 80 3 8754454 8754880 ACCCTTTAGGAAAGGTATTCTC 57 8754395 8754413 AGATGCACAAGACATCGTG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 3 1 2 116 13 96304072 96335197 AGAGTACAGAGGCAATAGTGG 59 96356645 96356666 ACCTGATAATCGTCCCAATCTC 60 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 1 2 2 80 X 65600082 65601034 AGATGGCAAGCAGAAAGGA 59 65601078 65601096 TTGTTGTACCAGCTCTCGT 59 NA Rattus norvegicus 81 Pla2g2a ENSRNOG00000016945 ENSRNOT00000022827 2 1 1 85 5 157284237 157284255 CTGGAGAAACGTGGATGTG 59 157284304 157284893 TCCTGGTTTGTAGAGCAGG 59 NA Rattus norvegicus 81 Nkain3 ENSRNOG00000013085 ENSRNOT00000017479 2 1 1 80 5 34499688 34644574 GCATGTATCTTTCAGCTTTGG 58 34499628 34499648 GCAGGAAATTTCCAAGAATGG 58 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396,ENSRNOT00000091263 2 2 2 84 6 58469725 58469745 GAGATCTGGCTCATGATTCAG 58 58471127 58481288 TCAGGTACCTGAGCTTCAG 58 NA Rattus norvegicus 81 Fam207a ENSRNOG00000001225 ENSRNOT00000001640 1 1 1 204 20 11887997 11888015 ATCAGAAGCTCAGGGAGGA 60 11893992 11895678 TCTTCCTCAAGAAGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 Syngr4 ENSRNOG00000021093 ENSRNOT00000028635 3 1 1 83 1 101873815 101874912 TTCATTCTGGCTGTCCTCTG 60 101873751 101873769 CTTGGACTTCGAATGCTGC 60 NA Rattus norvegicus 81 Egr2 ENSRNOG00000000640 ENSRNOT00000000792 2 1 1 153 20 22458364 22458382 CCCAGTAACTCTCAGTGGT 58 22456899 22458248 GTTGATCATGCCATCTCCAG 59 NA Rattus norvegicus 81 Egr2 ENSRNOG00000000640 ENSRNOT00000000792 3 1 1 153 20 22458365 22458383 TCCCAGTAACTCTCAGTGG 58 22456900 22458248 TTGATCATGCCATCTCCAG 57 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 3 6 8 81 20 1960695 1960716 CTCTATGTTCACCAAGATCTGG 58 1960549 1960653 CTCTAGGGTCTTCCTCCAC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 3 7 8 62 20 1960490 1960508 TGGATGTCCTGACTCTTGC 59 1959901 1960464 AAGTCTCAATGGTTCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 2 5 8 83 20 1983427 1984092 GGTTGCCAGATTATACATCCG 59 1983364 1983382 GAAGTTGATGGCCTTCACC 59 NA DesignNoJunction Rattus norvegicus 81 Gbx1 ENSRNOG00000013369 ENSRNOT00000017854 3 1 1 60 4 7175043 7175062 CACTTCTCAGAGACTTTCCC 58 7200046 7200064 CCTCATCTGAGCTGTACAC 57 NA DesignNoJunction Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646,ENSRNOT00000082723 1 5 5 80 4 140413594 140413612 CCTTTCAGACACATTTGCC 57 140413654 140414438 TATGTACTCCTGGTTCTTCCT 58 NA Rattus norvegicus 81 RGD1561958 ENSRNOG00000022411 ENSRNOT00000035274 3 1 1 80 X 83930608 83944548 AGCCTTTCTGCAAATGTCC 59 83944589 83944610 TCCAGAGTTGTTCACATTTCTC 59 NA Rattus norvegicus 81 Scgb2a1 ENSRNOG00000023151 ENSRNOT00000031612 1 1 1 80 1 225901118 225901137 CTGTGAAGCAATTCAAGCAG 58 225901179 225901893 ATATTGCCTCCATCATCACG 58 NA Rattus norvegicus 81 Tcp11l2 ENSRNOG00000007587 ENSRNOT00000010024 1 1 1 80 7 24864811 24864831 AGGTTCAAGCTAATCTTGTCG 59 24859931 24864769 TCCGTTTATCCATCAAGGC 58 NA Rattus norvegicus 81 Pak2 ENSRNOG00000048597 ENSRNOT00000071060 3 1 1 80 11 72842814 72842835 TGTCTTGAAGTTCTACGACTCC 60 72842873 72843794 GAAGGAAAGCCATCTTTCTCAG 59 NA Rattus norvegicus 81 Atxn7 ENSRNOG00000007246 ENSRNOT00000010103 1 1 1 80 15 12440814 12442482 GGAAGAGTCAGCATGACAC 58 12440752 12440771 TACTGTGGACCTCAGTAGTG 58 NA Rattus norvegicus 81 AC117925.6 ENSRNOG00000060514 ENSRNOT00000090828 2 1 1 88 4 114852978 114853091 ATGCTTCTTCAGTACAGGCT 59 114852611 114852629 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041,ENSRNOT00000036156 2 2 2 80 1 266006989 266007854 TCCCAGAAAGAAGGCACAG 60 266007897 266007916 TGTGAGGGAGATAAGGAAGC 59 NA Rattus norvegicus 81 Tas2r137 ENSRNOG00000030413 ENSRNOT00000046917 3 1 1 60 4 68653914 68653932 TGTTCTTGGGAATCTGTGG 57 68653955 68653974 CAGAAAGTAGGCAATCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 1 2 2 80 19 52160886 52162401 CCTTTAGACTGGAATGGCGA 60 52160825 52160843 CACAAAGTAGCCCATGCTG 59 NA Rattus norvegicus 81 LOC100365798 ENSRNOG00000045865 ENSRNOT00000007690 2 1 1 60 3 76102158 76102177 GGCTACCTTCAATGAGAGTG 58 76102117 76102138 GAGGATAAACAAGTAGGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atic ENSRNOG00000015511 ENSRNOT00000021105 3 1 1 80 9 78868549 78868848 TTGGCATTGAAGGCATTCAC 60 78868888 78868909 TCCTTTACTGTACTGTCTCCTG 59 NA Rattus norvegicus 81 Tsfm ENSRNOG00000048843 ENSRNOT00000071543 2 1 1 81 7 70318091 70318111 GGGAGAAAGACTAAAGAAGGC 59 70317186 70318048 CTGTCTCGCAGTTTACCTC 58 NA Rattus norvegicus 81 Mycbp2 ENSRNOG00000010479 ENSRNOT00000014583 3 1 1 80 15 93717349 93719450 GACATTAGCTAGGCACCAC 58 93717287 93717308 CGCAGATATCTCATTTCATCCT 58 NA Rattus norvegicus 81 AC128618.1 ENSRNOG00000055221 ENSRNOT00000080859 3 1 1 74 6 107489659 107489677 AGAAGCCGTGAACTACCTG 59 107492192 107492211 CCTTTGGAAATCCCAAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Lin37 ENSRNOG00000020929 ENSRNOT00000028413 3 1 1 80 1 89012579 89013998 AAAGTGGAGAAATCAGAGATGG 58 89012520 89012538 ACTCTTCTCCAGCAGACAC 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392,ENSRNOT00000070981 1 2 2 105 10 13417264 13417282 TACAGCAAGGATGCTGAGG 60 13417351 13417867 CAGAGTCACCCTTACAGGC 60 NA Rattus norvegicus 81 Olr255 ENSRNOG00000051414 ENSRNOT00000083135 3 1 1 60 1 172485467 172485485 TATGTGATGCCCAAGTCCA 59 172485425 172485445 TGTAGAACACAGAAACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfand6 ENSRNOG00000013506 ENSRNOT00000018098 1 1 1 80 1 146757374 146757393 AGTATCCGAGACAGAAGACC 58 146748757 146751732 GATACTGAAGATGGAGGATCAC 58 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175,ENSRNOT00000045087 2 2 2 80 8 114004079 114005338 AGAATGCCATTGTGTTCGT 58 114004017 114004037 GACAGACAAACTGTATCACCT 58 NA Rattus norvegicus 81 LOC298111 ENSRNOG00000050117 ENSRNOT00000048383 2 1 1 84 5 52653606 52653972 GCTCTATGGAAGAACAAAGGA 58 52653542 52653560 GTCCCTAGTGATTCCATGC 58 NA Rattus norvegicus 81 Vash2 ENSRNOG00000003832 ENSRNOT00000005095 3 1 1 81 13 109544127 109551548 CTGGCTAAGCCTTCAATTCC 59 109544065 109544083 AATTCTGGATGGCCTGGAG 60 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390,ENSRNOT00000082221 1 2 2 80 1 214494430 214498416 AAACATGTAGGCCTCATTCAC 59 214494370 214494388 GATGACCAGAATGACCAGC 58 NA Rattus norvegicus 81 Fcf1 ENSRNOG00000004723 ENSRNOT00000006297 1 1 1 80 6 108799106 108802047 TGTACGCCAAGTGTATCCC 60 108802091 108802109 GTGCCACACGATACTTCTG 59 NA Rattus norvegicus 81 RGD1561017 ENSRNOG00000038474 ENSRNOT00000058627 2 1 1 80 10 41545069 41545867 TGTTTGTGAGGGACTCATACC 60 41545009 41545027 TTTCCAGGAAGCTCCAGAG 59 NA Rattus norvegicus 81 LOC102552549 ENSRNOG00000050874 ENSRNOT00000071495 3 1 1 126 10 84847289 84847421 TGGAGTACTGTAAACCCTGC 60 84846842 84846860 ATCTCAATCTCGAAGGCCC 59 NA Rattus norvegicus 81 Dnajc12 ENSRNOG00000051960 ENSRNOT00000082430 2 1 1 81 20 26893182 26893200 GATACTGAACTACAGGCCG 57 26893245 26902525 AATTTGCTCAACCGAGGAG 58 NA Rattus norvegicus 81 Spata17 ENSRNOG00000002504 ENSRNOT00000073142 2 1 1 80 13 105573382 105616919 ACCAATGATGCAATTAGGGAG 59 105573322 105573343 CAGTTCCAGGAGAATCTTTCTC 59 NA Rattus norvegicus 81 Radil ENSRNOG00000024456 ENSRNOT00000033998 1 1 1 81 12 14154731 14155582 AGTTCTAGAAGGAGACGCG 59 14155627 14155645 GAAGTCCTCTGTGCTGGAG 60 NA Rattus norvegicus 81 Ajap1 ENSRNOG00000050137 ENSRNOT00000071459 3 1 1 82 5 170625359 170627759 AATGGAAACCGATCCTCCT 58 170625295 170625314 CAGCAGGAGATTTCAAACCA 59 NA Rattus norvegicus 81 Vrtn ENSRNOG00000048378 ENSRNOT00000073962 1 1 1 194 6 108365108 108365126 AGCCTGTTACCTTCTACCT 57 108365320 108365338 CCATTCAACAGGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032,ENSRNOT00000082205 2 2 2 80 8 49697684 49697809 TCTATTATGACTACCAGACCCT 57 49697848 49697868 GGATGAGAAGTATCCCAACAG 58 NA Rattus norvegicus 81 Nodal ENSRNOG00000000556 ENSRNOT00000000672 3 1 1 81 20 31036144 31036163 TACATGTTGAGCCTCTACCG 59 31036206 31041840 CAGTCACATCCACATCTTGC 59 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 1 2 2 80 5 151194045 151194063 TGGCTACTACATCACCACG 59 151194107 151196481 AGACCGTCATTCACTTCCA 59 NA Rattus norvegicus 81 Nxph1 ENSRNOG00000008939 ENSRNOT00000011833 2 1 1 60 4 35279070 35279090 GTGCCAATCTAACAAATGGTG 58 35279110 35279130 GTAGACTTGCTGTTTCCTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm4 ENSRNOG00000013280 ENSRNOT00000047572 3 1 1 80 15 62417925 62417944 CACAAACTGGTCATACAGCT 58 62417984 62420160 ATTCCTTATCTCCACTTCAAGC 58 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171,ENSRNOT00000008759,ENSRNOT00000049771 1 3 3 80 15 11852182 11853782 AAAGTTTGAGCCTACTGATCC 58 11852122 11852141 GCAATTAGTAAGGTCCACCA 58 NA Rattus norvegicus 81 Dazap2 ENSRNOG00000004628 ENSRNOT00000006239 3 1 1 80 7 142239190 142240359 GAACAGCAAAGGTCAATATCCA 59 142240396 142240418 TGTAAGGTCTGAGGATATACTGG 59 NA Rattus norvegicus 81 Dtx3l ENSRNOG00000023400 ENSRNOT00000039215 2 1 1 80 11 67762965 67763750 GGCATACAAACAAAGGAGCA 59 67763791 67763811 CGCATTATCAGGCAAATATGC 59 NA Rattus norvegicus 81 Eef2k ENSRNOG00000016448 ENSRNOT00000022726 3 1 1 80 1 190817936 190817957 GTTCTGATCAAGATGGCATCTC 59 190819631 190820060 GAAGTTGGAGAGTTTCTTCGTC 59 NA Rattus norvegicus 81 Cmbl ENSRNOG00000011260 ENSRNOT00000015448 2 1 1 83 2 84658547 84658565 TATATTTGGCTGGCAGCTG 58 84658610 84661054 AAGTCTGGGACAATAGTTGTG 58 NA Rattus norvegicus 81 Nup188 ENSRNOG00000025185 ENSRNOT00000030996 3 1 1 80 3 8906072 8906091 TTCATCCTACAACTGTCCCA 58 8906133 8906654 CAGGTTCACCTGAACATCAC 59 NA Rattus norvegicus 81 Pex7 ENSRNOG00000012322 ENSRNOT00000016728 1 1 1 80 1 15356542 15357153 CAAACTGTCAAAGTGTGGGA 59 15356481 15356501 TGTGCTGTAAATGACACTCTC 58 NA Rattus norvegicus 81 Ccr6 ENSRNOG00000012964 ENSRNOT00000017302 2 1 1 83 1 53066183 53087229 CCGGAACATTATTGGAAACGA 59 53066120 53066143 GAAACATAGAGTAATCTGAGCCAG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0554.2 ENSRNOG00000051071 ENSRNOT00000076704 2 1 1 60 X 55114354 55114373 CAAACCAAGTCAAAGGTGTG 58 55114393 55114414 GCACAGTTCATATCGTGATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 1 2 2 80 18 56639043 56639756 CTTGTGTCAAGGTGGATGG 59 56638981 56639000 TATGCAGTTCTGTACAAGGC 58 NA Rattus norvegicus 81 Nudcd3 ENSRNOG00000056148 ENSRNOT00000083191 2 1 1 105 14 86333276 86333294 CTTTCTCTACCGCAAGACC 58 86326735 86333208 TTTAAAGACCTGCAACACCA 58 NA Rattus norvegicus 81 Rap1a ENSRNOG00000032463 ENSRNOT00000047836 3 1 1 82 2 208210858 208210877 ACAGTTCAGTTTGTTCAGGG 58 208208086 208210815 TCTACTTCGACTTGCTTTCTG 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651,ENSRNOT00000071939 2 2 2 87 20 9331521 9335028 TGTTAAAGAACTGGCGGGA 59 9335079 9335097 TCCAGGGTGTACAAGTAGC 59 NA Rattus norvegicus 81 Actn2 ENSRNOG00000017833 ENSRNOT00000024098 3 1 1 80 17 66339700 66342234 TCAGTGGAAGAAACATCTGC 58 66339639 66339660 GATGTTCACATTTCGGTATGGT 59 NA Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 3 2 2 80 10 10797360 10797378 CACTGTCTTCCTTGACCTG 58 10797060 10797317 GAGCTATGTTCAGAGCTCTC 58 NA Rattus norvegicus 81 AABR07060591.1 ENSRNOG00000059195 ENSRNOT00000078254 3 1 1 89 4 82665205 82668742 TTTAACAGGATACAGGGCCT 59 82668792 82668812 CCCTCTGAGTGTTCTTAATGC 59 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018,ENSRNOT00000084317 2 2 2 80 1 48703309 48703329 TATTCCAAGCAGATCACTGTC 58 48703369 48705248 GATATTGGCACCTTTGATGTC 57 NA Rattus norvegicus 81 Ostn ENSRNOG00000030462 ENSRNOT00000049841 1 1 1 81 11 76855975 76874449 CATAGAGGGAAACAAAGGAGAG 58 76855915 76855934 GACGGTTTCTACCAATTCGA 58 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 2 3 3 81 10 3342561 3356733 CATATAAGACTGGTCTGATGTACTG 59 3356938 3356957 TATGCTGTCCTCCAGTTCAC 60 NA Rattus norvegicus 81 Cyp26c1 ENSRNOG00000030698 ENSRNOT00000030962 1 1 1 80 1 256374115 256375816 CAAGAGCTGAAGGAGTTGG 58 256375860 256375878 CAGGATAAGGGATGTGCTG 58 NA Rattus norvegicus 81 Rnf6 ENSRNOG00000000968 ENSRNOT00000001282 2 1 1 103 12 10577157 10577177 CAGAGAAGAAGCCTATTACCA 57 10577242 10578795 CGGATGTTATGTCTCCAGG 57 NA Rattus norvegicus 81 Frem3 ENSRNOG00000039152 ENSRNOT00000059896 1 1 1 80 19 31024651 31024670 TACATCCTGAACAAGGACCA 58 31010816 31024608 TAACTGGCTTCCTCCACTG 59 NA Rattus norvegicus 81 Hmx3 ENSRNOG00000020637 ENSRNOT00000028007 2 1 1 140 1 203510124 203510745 CCAGAAGCCTCTGAGAAGG 60 203510848 203510867 TTCCAGAATGATCTCGTCCG 60 NA DesignNoJunction Rattus norvegicus 81 Dzip1-ps1 ENSRNOG00000046611 ENSRNOT00000072327 2 1 1 60 14 21878426 21878447 CATTGATGTAGACAAGGTGGTG 59 21878387 21878408 CATGATGTTCTCCTGAAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690206 ENSRNOG00000013566 ENSRNOT00000018127 1 1 1 123 5 155794288 155796645 GAGAAAGGGTAGCCAACCA 59 155796732 155796750 GGATGTGTTGTTGGGTTGG 59 NA InUTR Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 2 2 2 80 3 93712642 93712662 TATCAGCACAACCTATGAACC 58 93710841 93712605 GTCTAGATTCAGAATGAACCTGAG 59 NA Rattus norvegicus 81 Sftpc ENSRNOG00000011177 ENSRNOT00000015035 1 1 1 80 15 52212081 52212438 AGAACTTCCAGGCCAAGTC 60 52212019 52212038 AATCAGAATCGGATCCAGCA 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 3 3 3 81 11 81637704 81637722 AATCTGACTGTTGGGTCCT 58 81637022 81637659 TGTCCAATCACAACCTCAG 57 NA Rattus norvegicus 81 Fn3k ENSRNOG00000036659 ENSRNOT00000054915 2 1 1 82 10 110640962 110641892 AGGCTACAGGTGAAGATCC 59 110641938 110641956 TTTCCAGACCAGAGGTCTC 58 NA Rattus norvegicus 81 Snrpd3 ENSRNOG00000050410 ENSRNOT00000075517 1 1 1 80 20 14083506 14093683 AACATGAACTGCCAGATGTC 59 14083445 14083464 ACGTATGTACACCTGTTCCA 59 NA Rattus norvegicus 81 Snrpd3 ENSRNOG00000050410 ENSRNOT00000075517 2 1 1 80 20 14083506 14093682 ACATGAACTGCCAGATGTC 58 14083444 14083463 CACGTATGTACACCTGTTCC 58 NA Rattus norvegicus 81 Fezf2 ENSRNOG00000009206 ENSRNOT00000012452 1 1 1 134 15 12829067 12829085 AGGTGCTGAAGGAGAACTC 59 12829183 12829554 GAGCATTGAACACCTTGCC 60 NA Rattus norvegicus 81 Necap2 ENSRNOG00000008427 ENSRNOT00000011394 1 1 1 80 5 159602163 159602181 CTGTTCTCTGTGTCAAGCC 59 159599035 159602119 ATTCTGAGGCCCTGTAACC 59 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 2 2 2 80 12 13718149 13718167 CAGGTCATCACTATCGGCA 59 13718211 13718319 ACAGGATTCCATACCCAGG 59 NA Rattus norvegicus 81 Mrpl12 ENSRNOG00000036695 ENSRNOT00000054965 1 1 1 106 10 109658326 109658827 CTTGTCAGGCAACAGATGC 60 109658897 109658915 TTGGGAGCATTATCCAGGG 59 NA Rattus norvegicus 81 Mrpl12 ENSRNOG00000036695 ENSRNOT00000054965 2 1 1 109 10 109658326 109658827 CTTGTCAGGCAACAGATGC 60 109658899 109658918 TCCTTGGGAGCATTATCCAG 59 NA Rattus norvegicus 81 Ift43 ENSRNOG00000010194 ENSRNOT00000013560 2 1 1 82 6 109993708 109994980 GAAGAAATGGAAGATCGCCG 60 110015365 110015383 AGATCTGGGATCACAGGGA 59 NA Rattus norvegicus 81 Cuedc2 ENSRNOG00000019574 ENSRNOT00000026609 3 1 1 83 1 266079152 266079308 TAGGAACAAAGAGACCCTGAG 59 266079089 266079107 TCATCTTGGGTGTTCCCAG 59 NA Rattus norvegicus 81 G0s2 ENSRNOG00000006019 ENSRNOT00000007879 2 1 1 60 13 112004735 112004753 TGATCCCTCTGGCTAAGGA 59 112004693 112004712 TACAGCTTCACTAGCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sv2a ENSRNOG00000021182 ENSRNOT00000028760 2 1 1 80 2 198330918 198333837 CAACACGGACCTGTTTGAG 59 198333880 198333899 GGGCAACCTTCCTTATTGTG 59 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 3 2 2 80 15 58655663 58656847 AATAGAGCAAGCTATGGATCTG 58 58656888 58656906 ATCTGCTCCTTCAGAACCT 58 NA Rattus norvegicus 81 LOC100360055 ENSRNOG00000050823 ENSRNOT00000031923 2 1 1 80 1 251361293 251363163 AACTGAAGAAATACAAGGGAGC 59 251361234 251361255 CAATGGAGCATATGATGTTTGC 59 NA Rattus norvegicus 81 Pgr ENSRNOG00000006831 ENSRNOT00000038313 3 1 1 80 8 7168836 7168854 AGTCTCAACCAACTAGGCG 59 7168897 7178330 GTGTAAGTTCCGGAAACCTG 59 NA Rattus norvegicus 81 Rn60_7_1414.2 ENSRNOG00000059186 ENSRNOT00000088489 1 1 1 83 7 143583118 143583136 ACTCCAGACACATGGAAGG 59 143583183 143583201 ATGTGGATCAAACCTTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 3 2 2 80 16 6070159 6070179 CCTTGGAAACAGATACATGGT 58 6069757 6070117 CTCGTCAGTTTGTTCTCCA 57 NA Rattus norvegicus 81 Eif3b ENSRNOG00000001253 ENSRNOT00000060444 2 1 1 80 12 16298837 16301239 TCTCACCTTGTGAAAGATACC 58 16298777 16298795 CCCAGATAATGATGGCCTG 58 NA Rattus norvegicus 81 Slc25a34 ENSRNOG00000021526 ENSRNOT00000022820 1 1 1 125 5 160179552 160179570 TTCTACTGCTACAGCCTGG 59 160178187 160179463 TGTCTTGACCAGGTAAGCA 59 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000078663 1 1 2 176 7 142905769 142905787 CCATCCAGAGTCTGCTCAG 60 142905927 142915509 TACAGGGCATCTCAGTGTG 59 NA InUTR Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000081095,ENSRNOT00000025723 3 2 5 86 1 100088386 100088407 TGTCATTGGTACAACTTTCTGC 60 100088449 100089332 CGATAATTCTTGCTATAGCAGTGG 60 NA Rattus norvegicus 81 Nt5c1a ENSRNOG00000015283 ENSRNOT00000020524 1 1 1 80 5 140896507 140899867 CCATTACGACCTGTTCATTGAG 60 140899907 140899926 TTGGTATGGTAGGCCTTGAG 59 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207,ENSRNOT00000086391 1 2 2 80 9 70432405 70432425 GATTTGGAAGACCTTTCGCTC 60 70432061 70432365 AGATGCAACAAGTTTCTCCTG 59 NA Rattus norvegicus 81 RGD1310081 ENSRNOG00000042118 ENSRNOT00000063899 1 1 1 80 2 57294928 57298341 AAACCCAAGAGAAAGGAGGA 59 57298381 57298402 AGTAGAGGTGACAGTACAAGAG 59 NA Rattus norvegicus 81 Nanos1 ENSRNOG00000025060 ENSRNOT00000036203 2 1 1 259 1 282135104 282135122 TACTGGAACGACTACCTGG 58 282135345 282135363 GCAAATGGGTTCAGCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd209f ENSRNOG00000042317 ENSRNOT00000064859 3 1 1 80 12 2660761 2661119 ACCCTGGTTCAAATTTCCA 57 2660699 2660717 TTTCCCAAAGCTGGAACTC 58 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000023329,ENSRNOT00000087067 1 2 2 80 1 153999710 154008676 CAACAATGAGGAGCTTCTCAG 59 154008717 154008736 AGGTCATCATACTCCTTCCC 58 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015075 3 1 2 82 4 132167636 132167656 TCTGGGTTAAGAGCATAAGGA 58 132157652 132167594 AAATGGAACTTTCCGAGTCAG 59 NA Rattus norvegicus 81 Ddx25 ENSRNOG00000012260 ENSRNOT00000017307 3 1 1 80 8 36748311 36748330 CATCATTCAGAGGTTCCGAG 58 36746312 36748268 TGCTTCACATCGATTCCTC 58 NA Rattus norvegicus 81 Treml1 ENSRNOG00000040109 ENSRNOT00000018138 1 1 1 80 9 14597726 14598325 GAAATTCAGGCATGGACCC 59 14597664 14597683 GCCTCATATGTGGTATGTCC 58 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627,ENSRNOT00000065931 2 2 2 80 19 26194563 26194693 AACAAAGTGCTGAGGTATAAGC 59 26194731 26194752 AAGATTCATGTAGTCCGGAGTC 60 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 1 1 1 73 7 34093431 34102292 TTTCTTCAGTGCACAGACG 58 34093376 34093394 TCCAGAAATGTATGCTGGG 57 NA DesignNoJunction Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307,ENSRNOT00000086502 2 2 2 102 15 14560246 14565408 TACATCTGTGGTCTTCGGG 59 14560162 14560180 AAGGTATCTCTGTCCCGAG 58 NA Rattus norvegicus 81 Izumo3 ENSRNOG00000022488 ENSRNOT00000033781 1 1 1 80 5 110706244 110706264 AGGCAGCATAAGGAGATAACC 60 110706046 110706203 ATTTCGAACAGCCAACAACC 60 NA Rattus norvegicus 81 Pmm2 ENSRNOG00000002615 ENSRNOT00000003542 1 1 1 80 10 7071515 7071534 GACAGAAGACCAAGATTGGA 57 7068921 7071473 TCTCAACCACATCATTTCCC 58 NA Rattus norvegicus 81 Vps35 ENSRNOG00000017612 ENSRNOT00000024020 3 1 1 80 19 27488309 27488329 AAGAGCATGAGCTGTTATGTG 59 27488369 27489514 TATGGAATCTACCTGGTCCTG 59 NA Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000071707,ENSRNOT00000073435 1 2 2 80 11 82871939 82875451 ACTTCTTTGCACAAGACCC 58 82875495 82875513 AATGAGTCTGCCAATGCTG 59 NA Rattus norvegicus 81 Adam7 ENSRNOG00000014054 ENSRNOT00000019209 2 1 1 80 15 49440554 49440574 AATGATTATCCGTTCTGTGGG 58 49439128 49440513 ATTGGTGCATTCCTGAACTG 59 NA Rattus norvegicus 81 Acox2 ENSRNOG00000007378 ENSRNOT00000010260 3 1 1 80 15 18452275 18452293 CATCTCGAGAAGCTAGCCT 59 18452335 18452546 TCCATCAAGGACTCTGTTAGC 60 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 2 2 2 84 X 124442861 124442881 GTGTTTATCAGCTTTGGTGTG 58 124436104 124442818 GTTTCAAATCAATGTGTCTGGC 59 NA Rattus norvegicus 81 Nxph2 ENSRNOG00000040333 ENSRNOT00000062080 2 1 1 60 3 307400 307420 CAGCATATGCAGACAATTTGG 58 307440 307460 TGAATCTCTGTTCTGTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 1 2 2 80 7 143163543 143163564 GATCAAGGCTCAGTATGATGAC 59 143163286 143163502 ATCTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Tmem201 ENSRNOG00000023152 ENSRNOT00000047763 1 1 1 80 5 166676192 166676211 CAGCCTCTTCATTGATCCTC 58 166675473 166676149 ATCGACCTCGTATCCACAG 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 1 2 2 80 5 173347437 173347545 GAGATCTTAGATTCTATGCTGTCC 59 173347584 173347602 CAGCTGATGTAGAAGGCTG 58 NA Rattus norvegicus 81 Rn60_X_0745.2 ENSRNOG00000051072 ENSRNOT00000075871 1 1 1 82 X 73639708 73639727 TCAGGAACAAAGACATTGCT 58 73639598 73639665 GATTCTCCTCATCACTGTTCC 58 NA Rattus norvegicus 81 Cyp27a1 ENSRNOG00000017188 ENSRNOT00000023152 1 1 1 80 9 81995674 81995694 ATTGCTCAGTCCTCAAGAGAC 60 81995734 81996996 GTCAGTGTATTGGATGTCGTG 59 NA Rattus norvegicus 81 LOC100910849 ENSRNOG00000047082 ENSRNOT00000075353 3 1 1 124 11 72934703 72934721 CAGTCACCTGAGGTCATGG 60 72932753 72932771 CAGAAGGTAGAGCCAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 3 1 1 68 X 72650456 72650761 GAAGAAGGAGTTCGCACTG 59 72650793 72650811 CTGAGTTGCTGTGTCAACC 59 NA DesignNoJunction Rattus norvegicus 81 AC139950.1 ENSRNOG00000056011 ENSRNOT00000083110 3 1 1 60 6 78180213 78180232 CTGGTAGGAGATGTGAAGGA 58 78180255 78180273 CACAAGTGTCAGCCATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt5a ENSRNOG00000015618 ENSRNOT00000021164 3 1 1 81 16 4481898 4481916 CCAAGGGCTCCTATGAGAG 59 4481960 4485783 GCCAGGTTGTATACTGTCCT 59 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 1 2 2 80 4 9982241 9990348 GTTCCAAAGAGGAGCTTGAC 59 9990390 9990409 CTCTCACTCCAGCTTCTTCC 60 NA Rattus norvegicus 81 Pdia3 ENSRNOG00000015018 ENSRNOT00000020478 3 1 1 80 3 113399521 113400314 CTAACTCCAAAGAAGTATGAAGGTG 60 113400351 113400370 AGGAGGGTTTGTAGCTTCTC 59 NA Rattus norvegicus 81 Nenf ENSRNOG00000003833 ENSRNOT00000005190 1 1 1 80 13 109990586 109991752 GACCTCACTCATGACATTTCTG 59 109990527 109990545 GGCTTTGTACACCTTGCTG 60 NA Rattus norvegicus 81 Bdh1 ENSRNOG00000001736 ENSRNOT00000002366 1 1 1 80 11 72581599 72587683 GATCCTGAGAAGGGAATGTG 58 72581538 72581556 CTCCATGCTAGTGAACTCC 57 NA Rattus norvegicus 81 Gabrd ENSRNOG00000016385 ENSRNOT00000022246 3 1 1 81 5 172799056 172799612 AACTTCAAATCAGCTGGCC 59 172798993 172799012 ACTGGATGATGTAGACACCC 59 NA Rattus norvegicus 81 Rn60_X_0698.2 ENSRNOG00000023879 ENSRNOT00000035857 1 1 1 60 X 68874599 68874620 TCATAAACCTGAAGAGGATCTG 57 68874560 68874578 ACCACAACAATAGCACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amdhd1 ENSRNOG00000005266 ENSRNOT00000007331 1 1 1 80 7 34406183 34406204 CTATATCTGACAGGGTCTGAGC 60 34403583 34406142 TATAAGCCCATCAGTGCCC 59 NA Rattus norvegicus 81 Zfp775 ENSRNOG00000008362 ENSRNOT00000011041 1 1 1 122 4 78240432 78248398 CAAAGTCAAAGGTGGCAGG 59 78254828 78254846 TCTCCTGCTTGATCCTTGC 60 NA InUTR Rattus norvegicus 81 LOC686641 ENSRNOG00000005921 ENSRNOT00000067444 1 1 1 60 3 76237882 76237900 TTCTTACAATGGCTGTGCT 57 76237923 76237942 AGATTCTGTGTCAACCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686641 ENSRNOG00000005921 ENSRNOT00000067444 2 1 1 60 3 76237609 76237628 GAGCTTGGAGAACAACACTG 59 76237650 76237669 TGGATGATCACTGAATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC097129.1 ENSRNOG00000031408 ENSRNOT00000048768 3 1 1 94 4 119583582 119587501 ACTGTCCAGGATCCATGAC 59 119583506 119583526 GGTCTTTAATCATGCAGGAGG 59 NA Rattus norvegicus 81 Olr292 ENSRNOG00000057889 ENSRNOT00000083924 1 1 1 60 1 212886222 212886241 CTATACCTACATTCGCCCTG 57 212886263 212886282 GATGGACACCACCTTATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gadd45a ENSRNOG00000005615 ENSRNOT00000007698 3 1 1 90 4 97784146 97784165 CTACTGGAGAACGACAAGAG 58 97783178 97784093 ATGAATGTGGGTTCGTCAC 58 NA Rattus norvegicus 81 RGD1559575 ENSRNOG00000032396 ENSRNOT00000046438 3 1 1 80 10 34234126 34241767 TGACAAATAAGCATCCTCCAG 58 34234066 34234086 AAAGTTGAGCCGTTAAAGGAG 59 NA Rattus norvegicus 81 Abtb1 ENSRNOG00000015762 ENSRNOT00000021445 3 1 1 80 4 120781360 120781378 TGTCCTGATGGCTTTAGCA 59 120781203 120781316 GAAGAAAGCCTTGTGGCAG 60 NA Rattus norvegicus 81 Olr630 ENSRNOG00000006024 ENSRNOT00000007890 2 1 1 60 3 76707944 76707962 CTCATTGCCTTTGTGTCCT 58 76707902 76707923 ATACATCACAGAAGTAGTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf15 ENSRNOG00000000012 ENSRNOT00000000013 1 1 1 68 3 147643798 147643816 CTTCTGTCTCAGCAACCAG 58 147649110 147649128 CTCACTTTCAAGCAGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Tk1 ENSRNOG00000047314 ENSRNOT00000071420 3 1 1 81 10 106819237 106819333 CTGGAGAAAGAGGTGGAGG 59 106819174 106819198 CTGAAGACTTCTTAAAGTAGCACAG 60 NA Rattus norvegicus 81 LOC100911994 ENSRNOG00000050855 ENSRNOT00000064866 2 1 1 80 4 31343270 31343289 CTTCAACCACATTTGGATGC 58 31343332 31343976 AGTTGAGACTGTCTGGGAG 58 NA Rattus norvegicus 81 Olr429 ENSRNOG00000025721 ENSRNOT00000036382 3 1 1 60 3 21292681 21292703 CCTATATTACTCGGACTGTTCTG 58 21292721 21292741 GAGAAGACTTTGTACCTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa7 ENSRNOG00000016877 ENSRNOT00000022698 2 1 1 103 1 72559154 72559172 GATCCTTCCACAACCTCTC 57 72559238 72559721 CAGATCTTTCTCAGCCAGTC 58 NA Rattus norvegicus 81 Camk1d ENSRNOG00000017882 ENSRNOT00000024099 2 1 1 80 17 76789646 76876550 CTGGTCATGCAACTTGTGTC 60 76876593 76876611 GCTGGCATCTTTCTCTGTG 59 NA Rattus norvegicus 81 Arl3 ENSRNOG00000019973 ENSRNOT00000027093 2 1 1 106 1 266314477 266314495 AGACCATACTGGAGAAGCT 57 266298032 266300102 AATTCCGTTAGCTCCTGAC 57 NA Rattus norvegicus 81 Slc2a7 ENSRNOG00000036951 ENSRNOT00000055520 3 1 1 98 5 167201525 167201543 CACTGATTCAGCTCCTCTC 57 167201604 167201899 TCCTTAGAGCTTGTCTTGTG 57 NA Rattus norvegicus 81 Ubl3 ENSRNOG00000000921 ENSRNOT00000061229 2 1 1 87 12 7904379 7904399 ACGAAAGAGTTCCTCTTCTCC 60 7904448 7906875 CTTCTTCCCAGTCCATGGG 60 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000038480 1 1 2 80 7 143601533 143603430 ATTGACAAGGTACGCTTCCT 60 143601472 143601490 GGATGTCTTCTGCTGTTGC 59 NA Rattus norvegicus 81 Fgfr1op ENSRNOG00000055093 ENSRNOT00000085501 2 1 1 80 1 53124295 53126537 AGTGACAAACTCGATGACC 58 53124233 53124253 TGCAACATCTTCCAGATAGTC 58 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 1 2 2 80 3 82610382 82610400 GTTCAAGTGTCCTGAGTGC 59 82603425 82610339 TTGATGCACTCAGACCTCTC 60 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 2 2 2 80 3 82610411 82611680 GCTGTCATCAAGGTAACCC 58 82610349 82610368 AGTCTGGTCTAGTGAGAGTC 58 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 3 2 2 84 12 13430076 13438069 TATCAAAGGGCCCACTGTC 59 13438117 13438135 GTCCTCTCCTCAGAGTCCA 60 NA Rattus norvegicus 81 Hoxb4 ENSRNOG00000008191 ENSRNOT00000010965 2 1 1 60 10 84167561 84167583 GATCAACTCAAACTATGTCGACC 60 84167601 84167621 ATCGCTCTGTGAATACTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba1y ENSRNOG00000052326 ENSRNOT00000092178 3 1 1 80 Y 437515 437536 AAGACTTCACTACCTACTCCAG 59 437575 443864 GTTGCTGTCATCATCCTTCTC 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000048109 1 1 4 80 18 6776920 6778905 GAGTCACCACGATCAATTATACC 59 6776862 6776882 CCCAGTTTCCCATGATAACTG 59 NA Rattus norvegicus 81 Actr2 ENSRNOG00000004959 ENSRNOT00000006607 1 1 1 80 14 104348640 104351214 TTGAGTCATACACTCTTCCAG 57 104348580 104348600 GCTGAAATAAAGCTTCTGGTG 58 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 2 3 3 81 20 3149119 3149138 CTGTCTCTGCAATTGTCCTC 59 3149182 3149689 CTTCCTCTTTCACCTGCCT 59 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 1 2 2 80 10 85944823 85945566 GAATGCTGAGTTTGTCATCCT 59 85944763 85944782 ATCTTATACAGCTCCTCCCG 59 NA Rattus norvegicus 81 Elovl3 ENSRNOG00000019124 ENSRNOT00000025938 2 1 1 94 1 265885642 265885876 TGGTTGAACTCGGAGACAC 60 265885933 265885952 CGTAAACAGTAGCACTGTGC 60 NA Rattus norvegicus 81 Tp53bp2 ENSRNOG00000003237 ENSRNOT00000004330 3 1 1 80 13 100849639 100849657 AAGCTCAAGAAAGTGAGGG 57 100849701 100850398 TTCAATTTCCTCCACCAGC 58 NA Rattus norvegicus 81 Ucma ENSRNOG00000017987 ENSRNOT00000066850 2 1 1 80 17 77256603 77261016 GAGATGAAGTCACTGCGGA 60 77256541 77256565 CATTCCTTTGCTCCTCATAATACTC 60 NA Rattus norvegicus 81 Fbxl15 ENSRNOG00000019509 ENSRNOT00000026471 3 1 1 232 1 266077139 266077157 AAGAGTTGGCTCGAAACTG 58 266077817 266077835 CATGTCCTGGAGTAGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Dlg5 ENSRNOG00000005783 ENSRNOT00000007828 3 1 1 80 15 213160 213178 TATGTCTCCAAGGTGACCA 58 213220 213364 GCCATTGAACTCAAGTAACTG 58 NA Rattus norvegicus 81 Cxcl10 ENSRNOG00000022256 ENSRNOT00000003075 2 1 1 81 14 17211492 17211705 GCATGTTGAGATCATTGCCA 59 17211748 17211767 TAAGCTCTTGATGGCCTCAG 60 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 2 2 2 80 2 235350411 235351813 TATTCATCATCCAGGCCTGTC 60 235351854 235351873 TGTCTGTCTGATGATCCACC 59 NA Rattus norvegicus 81 Mapk4 ENSRNOG00000015401 ENSRNOT00000047271 2 1 1 82 18 69904106 69904124 CTTTGTCAGCAGCACTTGG 60 69899969 69904062 CCAGAAAGTCAATGGCTTCAC 60 NA Rattus norvegicus 81 pramef20l ENSRNOG00000043130 ENSRNOT00000065599 2 1 1 81 14 15449738 15449758 TTCAATTGTCTCCAGCATCTC 58 15449801 15450594 TCATCAGGCTCCTGAAGAC 59 NA Rattus norvegicus 81 Slitrk1 ENSRNOG00000009209 ENSRNOT00000012195 2 1 1 60 15 93306402 93306420 GCTTGCATGAAATCGTTCC 58 93306360 93306379 ATATGCAGTCGTTTCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3572 ENSRNOG00000060004 ENSRNOT00000079634 2 1 1 62 1 64136044 64136062 TAAGTGGAGGCCAGTTTGG 60 64136000 64136019 AAGTGTAAACAGGCTGTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr154 ENSRNOG00000059092 ENSRNOT00000087952 2 1 1 60 1 169576056 169576076 GACCACTTCACTATACATCCA 57 169576098 169576116 CATGCCAGACCAATCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 2 2 2 84 1 2005394 2005615 TCCCAGATACCTTCACTCG 58 2005328 2005349 CTTTGGTTAAGCAGTCAATGTC 58 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000035821,ENSRNOT00000085599,ENSRNOT00000077790 1 4 4 84 2 57867921 57868470 GGGACCTCCTCAAGTTCTG 59 57867855 57867873 ATCTGGTGATGCGTTTGTC 59 NA Rattus norvegicus 81 AABR07005506.1 ENSRNOG00000025122 ENSRNOT00000036330 3 1 1 80 1 183630560 183630581 TCCTTCAATGATACGTTTGTCC 59 183630485 183630522 AGAGGACTCATCTTCATTCCAC 60 NA Rattus norvegicus 81 Il22ra2 ENSRNOG00000012259 ENSRNOT00000016354 1 1 1 86 1 15096056 15098454 TACAAGACGTATGGACAGGG 59 15098502 15098521 GGTTTCTTTGGTCAGGTCAC 59 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 2 2 2 80 9 10274694 10274712 CTCACAGCAACATGCACAG 60 10274754 10275245 GGGACACATCTATGTACTGCT 59 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 3 2 2 80 9 10275287 10275306 TTACTGCAGGAGAGTGTCAC 60 10275349 10275618 ATCTAAGGTGGCCTCACAG 59 NA Rattus norvegicus 81 LOC502684 ENSRNOG00000023721 ENSRNOT00000055415 1 1 1 80 3 147905639 147907491 ATCCTCGGGAATATCATCGAC 59 147907533 147907551 CCACTCCTGGAACTCAGAC 59 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 3 2 2 80 10 105319451 105320989 GACTTGTCAAATGTGCTGAG 57 105319390 105319408 TGAACTCGACGTTGTAGTG 58 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 2 2 2 81 5 157751742 157751935 CAGGCAATAAGCCCTTCAC 59 157751679 157751697 CTTGAGAGCAGGTACAGCA 59 NA Rattus norvegicus 81 Snw1 ENSRNOG00000037998 ENSRNOT00000057807 1 1 1 80 6 111488013 111488031 GAAATCCGTCATGACAGGC 59 111486547 111487972 TAGTTTGGACCTCTTATCAGGA 58 NA Rattus norvegicus 81 Ltv1 ENSRNOG00000015217 ENSRNOT00000020453 1 1 1 80 1 7329457 7329475 CCTTCATCAGTGTTTGCGT 59 7327114 7329414 TAGTCGAGGTCCTGAAACTG 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342,ENSRNOT00000024162,ENSRNOT00000091561,ENSRNOT00000081940,ENSRNOT00000074087 1 6 6 80 17 77198155 77198173 GAAGTTAGAGCTGCAGGTG 58 77198217 77199249 AACCTGGATTTCTCCTCCT 58 NA Rattus norvegicus 81 MGC112715 ENSRNOG00000000569 ENSRNOT00000057752 1 1 1 80 20 29914750 29914769 CTGGTCTATAAGCAGAGGCA 59 29918024 29918780 GATTCCTTGGGTGTTGCTG 59 NA Rattus norvegicus 81 Serbp1 ENSRNOG00000005890 ENSRNOT00000009503 2 1 1 87 4 98038052 98042051 AAAGTGAAGAGGCTCATGC 58 98042101 98042120 TTGATCTCCAGTTGAGACGT 59 NA Rattus norvegicus 81 Eif2s2 ENSRNOG00000017447 ENSRNOT00000023786 3 1 1 81 3 150397201 150397686 ATATGAGGAGTTGCTGAACC 57 150397139 150397157 AAATTTCCTCTTCTCGCCA 57 NA Rattus norvegicus 81 Olr586 ENSRNOG00000030946 ENSRNOT00000047110 3 1 1 60 3 75907112 75907131 CACACCGATGTACTTCTTCC 58 75907152 75907172 AGCAGTGGAATAACAGATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhh1 ENSRNOG00000010650 ENSRNOT00000014257 2 1 1 80 6 102240640 102240660 AGAATCAACACCTGAAGACCT 59 102240701 102240815 TACGAAGATCCTCAAGAGCA 58 NA Rattus norvegicus 81 Plekhh1 ENSRNOG00000010650 ENSRNOT00000014257 3 1 1 80 6 102240641 102240661 GAATCAACACCTGAAGACCTG 59 102240701 102240816 ATACGAAGATCCTCAAGAGCA 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416,ENSRNOT00000087118 2 2 2 80 10 10852453 10852471 CTGAACTTTGACCTGGACC 58 10852109 10852410 AGTCACTTCCACAACATCTC 58 NA Rattus norvegicus 81 Olr594 ENSRNOG00000058143 ENSRNOT00000091187 1 1 1 60 3 75988654 75988673 GAAGTGACTGCTGCTATGAG 59 75988695 75988714 TTCTATGCCTACACAAGTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf5 ENSRNOG00000004556 ENSRNOT00000006005 2 1 1 80 6 103575602 103579047 CTCCGGAGGAAATGATGAG 57 103574650 103574669 GCATCTTCATGAGCAAACAC 58 NA Rattus norvegicus 81 Bcl2l12 ENSRNOG00000020486 ENSRNOT00000027777 2 1 1 100 1 100992133 100992151 GCGGGAAAGTTGAACTTCG 60 100991485 100992069 CATGGAGGTACCTGGATCG 59 NA InUTR Rattus norvegicus 81 Cxcr1 ENSRNOG00000048239 ENSRNOT00000090868 1 1 1 60 9 81466860 81466879 CTTTAAGGCCCACATGAGAC 59 81466819 81466839 CAACACAACAGCAAAGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh1l2 ENSRNOG00000008586 ENSRNOT00000059639 1 1 1 80 7 26393230 26395445 AGAGATAGACGGACAGATGG 58 26395488 26395506 ATGTCCAGTGGTTCTCCAG 59 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601,ENSRNOT00000084628 1 2 2 81 1 53190413 53191760 TTATGCCAGAACAGGGAGAG 59 53191804 53191822 TTCCGCAAATGGAAGTCCT 60 NA Rattus norvegicus 81 Olr1411 ENSRNOG00000032495 ENSRNOT00000049730 3 1 1 85 10 36554928 36554948 CTCCTCGATTCCAGAGATCTC 59 36554993 36567791 GTTGATTGACTCGAGTGTCTG 59 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000077689,ENSRNOT00000020733 2 2 2 94 10 14252823 14253024 AAGTGCATAGGAGTGGCTG 60 14253082 14253100 CGAATGACCTTCATGCTGC 60 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 3 2 2 121 3 164275571 164275589 CTCTGAAGATGCACATCCG 58 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Rab40b ENSRNOG00000036661 ENSRNOT00000054917 1 1 1 80 10 110558976 110559458 GAGGCCAAGCAAAGTACTG 59 110558914 110558932 TTGTCTACCAGGTGCACAG 60 NA Rattus norvegicus 81 AABR07035098.1 ENSRNOG00000000887 ENSRNOT00000001186 2 1 1 100 12 4634349 4634368 GCCTGTCTACTGTTCTGTC 58 4634430 4634450 CTCTGCTTCTGTAAGAATCCT 57 NA Rattus norvegicus 81 Cotl1 ENSRNOG00000016257 ENSRNOT00000021954 1 1 1 81 19 52499246 52499264 CCACGAAGATCGACAAGGA 60 52499084 52499201 AAAGTCACCCAGATGACCG 60 NA Rattus norvegicus 81 Ceacam10 ENSRNOG00000050105 ENSRNOT00000027214 1 1 1 97 1 81643939 81644727 GACTACTGCTCACAGCCTC 60 81644787 81644806 GTTCTCCTCAACAACGTTGG 60 NA Rattus norvegicus 81 March1 ENSRNOG00000026310 ENSRNOT00000032289 3 1 1 83 16 25001959 25014628 GGTAACGACAATGGTGTGC 60 25001894 25001912 GAAGACGAGACCTCCTGTG 60 NA Rattus norvegicus 81 Rnase3 ENSRNOG00000031445 ENSRNOT00000040857 2 1 1 66 15 28217592 28217610 CTGATTTCCAGGACAGCCA 60 28217384 28217562 AGACCCATGTTTCCCAGTG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 2 2 2 81 6 1571713 1573914 GTTACTTTCAATGGAGAGCCT 58 1571652 1571673 CACTGTTCACATCATTACTGTC 58 NA Rattus norvegicus 81 RGD1565059 ENSRNOG00000021324 ENSRNOT00000086472 1 1 1 83 2 154491171 154505260 CATGGAAACAAGAGCCGTG 60 154491106 154491124 TCTGTAGCCACACCTTACC 59 NA Rattus norvegicus 81 Naa30 ENSRNOG00000014192 ENSRNOT00000020074 3 1 1 81 15 26040126 26040144 AAAGATGTTCCGCAGAGGT 59 26040187 26042692 TACCAAGTTAGTACCGATGCC 60 NA Rattus norvegicus 81 Ptma ENSRNOG00000018584 ENSRNOT00000025093 2 1 1 81 9 93548149 93548172 GACAATGAGGTAGATGAAGAAGAG 59 93548210 93548451 CATCTTCTTCCTCACCATCAC 59 NA Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000029488,ENSRNOT00000082139 2 2 2 80 15 27720958 27722469 TTCCCATCAGGGAATAGCTC 59 27720897 27720917 CTGAACATCTTCATCTCCACC 59 NA Rattus norvegicus 81 Olr1401 ENSRNOG00000033524 ENSRNOT00000043954 2 1 1 60 10 34805261 34805280 CCCACTACACTACACAACCA 59 34805303 34805321 GGAGAACACAACCAATGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 3 2 2 80 16 6883885 6883903 AGGAAGAATTGCTGAGCTG 58 6883944 6888072 ATAAGCAAAGTAAGGACCTCTC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762,ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 1 10 10 80 7 117246916 117247150 AGCCTACTTCCAGTTCTTCTC 59 117246856 117246875 TACTTCCTGCGTAACGTCTC 60 NA Rattus norvegicus 81 Nlrp14 ENSRNOG00000023847 ENSRNOT00000051854 3 1 1 80 1 171326789 171328937 GTGCTGAGGTTGGAATCCT 60 171328981 171328999 CAGGCTCCTGTTACTCTGG 60 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 2 2 2 92 1 80307607 80307950 AGATCCGTGAGAAGGTCCT 60 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Tubb5 ENSRNOG00000061216 ENSRNOT00000079854 2 1 1 99 20 3422693 3423996 GTGCTAAGTTCTGGGAGGT 59 3424058 3424077 TACACAGAGATTCGGTCCAG 59 NA Rattus norvegicus 81 RGD1559588 ENSRNOG00000045868 ENSRNOT00000074970 1 1 1 80 12 19890768 19890787 TTCCTGAACAGAATCTGGCT 59 19890830 19891143 CTGCTGAATTCCCAGTGTG 59 NA Rattus norvegicus 81 RGD1310110 ENSRNOG00000031849 ENSRNOT00000041420 1 1 1 80 15 26669067 26669085 GAAGAACGAGTCCATCCCT 59 26655179 26669026 CTTCTACCTCTTCAGATTCGAG 58 NA Rattus norvegicus 81 Nptx1 ENSRNOG00000003741 ENSRNOT00000005067 3 1 1 80 10 108687189 108688420 GATACTCATTAACGACAAGGTGG 59 108687131 108687150 GTCCAGGTAACGCATATGTG 59 NA Rattus norvegicus 81 Pradc1 ENSRNOG00000050483 ENSRNOT00000073135 1 1 1 80 4 117231279 117231300 GAGATGATCCAGGATAGTACCC 59 117231007 117231239 TCGGATCATGTAGCCATCTC 59 NA Rattus norvegicus 81 RGD1565904 ENSRNOG00000049116 ENSRNOT00000073735 2 1 1 80 11 83881073 83881178 TTTACCCTGTAGACTTAGGTGAC 59 83881015 83881034 CACCATCATCCAAGGTACCA 60 NA Rattus norvegicus 81 Gucy1b3 ENSRNOG00000012060 ENSRNOT00000064930 3 1 1 80 2 181010058 181012841 AGTCCTCAACCTCAATGCT 59 181009996 181010016 TCATAGCCAGACTCTTGACAG 59 NA Rattus norvegicus 81 Efnb1 ENSRNOG00000006877 ENSRNOT00000009635 2 1 1 80 X 68901852 68901870 CAACACTGTCAAGACAGCC 59 68901914 68902164 TGGTTCACAGTCTCATGCT 59 NA Rattus norvegicus 81 Inadl ENSRNOG00000007551 ENSRNOT00000010211 2 1 1 80 5 117277913 117277931 TCACAAGAGATCCCGTCAG 59 117277975 117279942 AGCCTGGAAGTTACCAGAG 59 NA Rattus norvegicus 81 Timp2 ENSRNOG00000003148 ENSRNOT00000004290 3 1 1 96 10 107351592 107385826 TGCAGACGTAGTGATCAGG 59 107351514 107351537 CTCATATTGAATCCTCTTGATGGG 59 NA Rattus norvegicus 81 AABR07041771.1 ENSRNOG00000033679 ENSRNOT00000042507 3 1 1 60 X 139228977 139228997 GATCTATTCTGAAAGCTGCCC 59 139228937 139228956 TCTTCATTCACAGTGTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgi1 ENSRNOG00000014758 ENSRNOT00000020411 2 1 1 80 1 256976183 256988360 TGATTCACTTGAGTCTTGCA 58 256988400 256988421 CATTTGTTAAAGAATCCAGGCC 58 NA Rattus norvegicus 81 AABR07017560.1 ENSRNOG00000043459 ENSRNOT00000067148 2 1 1 80 15 26924199 26924222 TTGGTCAGTAGGTATCCATTCG 60 26924140 26924161 CTATCTACCTCATTGGGACCAC 60 NA Rattus norvegicus 81 Olr1237 ENSRNOG00000047869 ENSRNOT00000075043 3 1 1 60 4 1497563 1497587 TTACCACTCCTACCATCTTTATCTC 60 1497605 1497623 CTGATGTGGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xkrx ENSRNOG00000054136 ENSRNOT00000077996 2 1 1 80 X 104979789 104983823 CCTGTTATCAGATGTTTGGAGG 59 104979730 104979748 GCTGACATATGGCTCTTCC 58 NA Rattus norvegicus 81 Slc7a6 ENSRNOG00000019943 ENSRNOT00000027117 3 1 1 80 19 38176488 38176996 AAAGTTCTGGCTACTGTCAC 58 38177036 38177057 TTTCTCTTCAGCTACATCTAGC 58 NA Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 1 2 2 80 8 105448369 105460896 GACAGAAATGGCAACATCAG 58 105448308 105448328 ATAAGCAGTTACCAGGATCTC 57 NA Rattus norvegicus 81 Slc39a2 ENSRNOG00000010375 ENSRNOT00000013786 1 1 1 80 15 28296052 28296071 GGTTGATGCATATGACTGCT 59 28296112 28296368 TTCCTGTACTATTCTGCACCA 59 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 3 2 3 80 9 10462185 10462203 GAGACAGCACTGAACTGGT 60 10460554 10462145 CTTCCTTGTCATCTATAGCATGC 60 NA Rattus norvegicus 81 Slc25a26 ENSRNOG00000012831 ENSRNOT00000065705 2 1 1 80 4 126528585 126532219 ATCCTTTCCTAATGCTGCTG 58 126532262 126532280 AAGTGTGAAGTTGAGTCGG 58 NA Rattus norvegicus 81 AC114343.1 ENSRNOG00000051860 ENSRNOT00000089631 1 1 1 191 15 28028961 28028979 AGCCAAAGACTCCATCCTG 59 28029134 28034118 GTCACCTAGAAAGTGCACG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0736.1 ENSRNOG00000003027 ENSRNOT00000004045 1 1 1 60 X 72677206 72677224 GCATCATACCCGATTCCAG 58 72677247 72677266 TCCACAACTTCTCCTGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502176 ENSRNOG00000030321 ENSRNOT00000045098 1 1 1 80 18 60745193 60748505 CAACAAGGCAGGCTTTACAG 60 60748547 60748566 TGGTGTTTGTCTTTCTGGGT 60 NA Rattus norvegicus 81 Yjefn3 ENSRNOG00000039191 ENSRNOT00000065345 1 1 1 94 16 21286814 21286922 ACGGGTGTTCGAATACCAG 60 21286980 21286998 TGTCCATCTTCTCGCACTG 60 NA Rattus norvegicus 81 Mtm1 ENSRNOG00000002516 ENSRNOT00000062057 2 1 1 80 6 18827083 18829745 TTGATATCACCTGCAAAGACCT 60 18829786 18829804 CGTCAAAGATGTCCCTCCT 59 NA Rattus norvegicus 81 Dpp10 ENSRNOG00000002595 ENSRNOT00000003527 1 1 1 80 13 39510657 39514249 CTAAACAGAACGAGGAGCCA 60 39510596 39510616 CTCTTCCACCTTGTTTGACAG 59 NA Rattus norvegicus 81 Dpp10 ENSRNOG00000002595 ENSRNOT00000003527 3 1 1 80 13 39572759 39581670 GGTTATATGAAGAGGAACTTCTGC 59 39572702 39572721 TCATCAGGAAGGCAAGTCTC 60 NA Rattus norvegicus 81 LOC100909831 ENSRNOG00000059263 ENSRNOT00000046197 3 1 1 60 3 74749808 74749829 CCTGATCATCCTTACAATGGTG 59 74749769 74749789 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif19 ENSRNOG00000003105 ENSRNOT00000004141 3 1 1 81 10 103324275 103324618 CCAAGGAGATCATGCAGCT 60 103324663 103324681 CGGGAGGAAGTCTGATTGG 60 NA Rattus norvegicus 81 Ktn1 ENSRNOG00000012255 ENSRNOT00000016449 3 1 1 80 15 24547966 24549452 ATTTGCACAAGGCTCAACAG 60 24549493 24549513 CAATAACAACCGTGTCTCCAG 59 NA Rattus norvegicus 81 Mvb12b ENSRNOG00000017172 ENSRNOT00000023172 3 1 1 81 3 12892816 12892836 GACATGAAACTCATCGACGTC 60 12886608 12892773 CCACCTCCTGTGTATCCAC 60 NA Rattus norvegicus 81 Acss2 ENSRNOG00000018755 ENSRNOT00000064013 2 1 1 80 3 151062848 151067982 TCCAGATGTCCAGATCTCCT 60 151068024 151068043 TCAAACTCATCTCCTGCCTG 60 NA Rattus norvegicus 81 LOC100361475 ENSRNOG00000033891 ENSRNOT00000045139 3 1 1 80 20 33175066 33175085 AGTACCGGTTGAAGTACCTG 59 33175125 33181039 CAATTTCATCACAAACAGCAGC 60 NA Rattus norvegicus 81 Ctcfl ENSRNOG00000028661 ENSRNOT00000034131 2 1 1 94 3 171145692 171146269 TGACAAAGGAGAACCTCGG 59 171145616 171145634 AGGTAAGGCCTTGATCTGG 59 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027063,ENSRNOT00000078153,ENSRNOT00000027062 1 3 3 106 1 100599237 100599255 ATTGAAACCAACAGGGCAG 59 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912373 ENSRNOG00000047537 ENSRNOT00000075067 2 1 1 81 5 28488035 28488055 GTGTTCCCTTTCAACTTTCAG 58 28488097 28490606 CATTCGTCTTACATCTGCCA 58 NA Rattus norvegicus 81 LOC683844 ENSRNOG00000042667 ENSRNOT00000012598 3 1 1 60 5 129298074 129298092 CCAATTCGATTTCTGCCGT 59 129298032 129298053 TCAACCAGTCATCTATACAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1c14 ENSRNOG00000017672 ENSRNOT00000023835 2 1 1 81 17 69827030 69827050 CGTGTAGCACTAAATGATGGT 59 69822094 69826990 CTTCATCCTTAGCAACCTTCTC 59 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 3 2 2 80 8 14115815 14117150 CAAAGCAACAGATCTCAGACAG 60 14115756 14115776 CTAAGTCTCCCATCATTCCCT 59 NA Rattus norvegicus 81 Cfl1 ENSRNOG00000020660 ENSRNOT00000015962 1 1 1 80 1 220872494 220872708 AACTGACAGGAATCAAGCAC 59 220872751 220872769 CTAGTTTCTCTGCCAGGGT 59 NA Rattus norvegicus 81 Olr659 ENSRNOG00000048520 ENSRNOT00000047910 2 1 1 60 3 77415092 77415113 ATCTATGTCTTCTCTGTGGTGG 59 77415133 77415152 GTTGGCTGTTTGTAATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 2 2 2 86 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976087 56982456 CTTAAGATCTGTGCATATGACTCC 59 NA Rattus norvegicus 81 Rarres1 ENSRNOG00000037853 ENSRNOT00000057504 2 1 1 83 2 164651297 164651397 CAACACAGGAAATCATTCCC 57 164651233 164651254 GCTCTTGACAATGGTAATTGAC 58 NA Rattus norvegicus 81 Olr718 ENSRNOG00000060711 ENSRNOT00000073134 2 1 1 60 3 78663410 78663428 CCTTGCCTATCTGTCACTC 57 78663368 78663387 AATCAACTTGGGTGAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map2k2 ENSRNOG00000020005 ENSRNOT00000027272 2 1 1 85 7 11464792 11464810 ATCTTAGGGAAGGTCAGCA 58 11463951 11464039 GGCTTCACATCTCTATGCA 57 NA Rattus norvegicus 81 Cox4i1 ENSRNOG00000017817 ENSRNOT00000024033 2 1 1 80 19 54250550 54250963 GGATGAGAAAGTCCAATTGTACC 60 54251003 54251021 GTCTTCCACTCATTGGTGC 59 NA Rattus norvegicus 81 RGD1304587 ENSRNOG00000002944 ENSRNOT00000004011 1 1 1 174 10 45559722 45559740 AGAACTACCTGGGCAACTC 59 45559878 45560042 TTCTTGTAACCAAGTGCGG 58 NA Rattus norvegicus 81 Slc25a1 ENSRNOG00000038001 ENSRNOT00000000306 3 1 1 85 11 87205944 87205963 AGCTACTGTACTGAAGCAGG 59 87206011 87206189 GGTTGTCTCCTTGGTACCA 59 NA Rattus norvegicus 81 RGD1305928 ENSRNOG00000057264 ENSRNOT00000087338 3 1 1 82 7 140248945 140265585 CCAAAGAAACAAACCAGAAGG 58 140265626 140265647 CTGGTGGACAGAATAATTACCA 58 NA Rattus norvegicus 81 Dcp2 ENSRNOG00000045895 ENSRNOT00000073952 3 1 1 80 18 35497256 35497277 TGGATTTCTACATGCAGAACAC 59 35497318 35640227 GACAGTGACTGAAGACAGC 58 NA Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000088447 2 1 2 112 3 173955862 173955882 GGGAATAAAGAAGTCACCTCC 58 173956910 173959471 TTTATACTGCAGCCTTTAGCAG 59 NA Rattus norvegicus 81 Cd55 ENSRNOG00000003927 ENSRNOT00000005284 3 1 1 80 13 47147567 47148883 GACAAAGGGTACAAGCTGG 59 47147505 47147524 AAATACGTCATCCCAGTCCA 59 NA Rattus norvegicus 81 Dnm3 ENSRNOG00000026490 ENSRNOT00000067653 1 1 1 80 13 80225958 80225979 CTCTCATCCAGCATATAGACAC 58 80223539 80225919 TTGGTAAGTTGCTGATTCAGG 59 NA Rattus norvegicus 81 RGD1304770 ENSRNOG00000042918 ENSRNOT00000066856 2 1 1 83 20 45017630 45020643 GTGGATACAGGTGCAAATGTC 60 45017567 45017585 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 1 6 7 80 5 166072254 166072274 TCTGTGACCAGTATTCAAGAG 57 166067865 166072213 CTTCTCTGACTCCTTCAGAC 57 NA Rattus norvegicus 81 Dcp1a ENSRNOG00000016015 ENSRNOT00000021475 1 1 1 80 16 6583505 6583787 CATCTAATAAAGAATGACTCCGGC 60 6583824 6583844 GTTGTCTTTGCTCTTGGTCAG 60 NA Rattus norvegicus 81 LOC100910807 ENSRNOG00000028899 ENSRNOT00000049424 1 1 1 101 X 124393487 124393505 CACTTGAACCAGGAAGCAG 59 124393570 124395697 TTTCTACTCTCCATGCCGG 59 NA InUTR Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 2 1 1 90 15 30751527 30751606 AGAAGGAGCAATGGAGACTC 59 30751659 30751677 TCTGGTAGGTGCAGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 2 2 2 81 2 183157305 183157324 TTTGCAGCTGTGAATAGCAG 59 183152005 183157267 CTCCTTCCTGATTAAATACCTTGAC 59 NA Rattus norvegicus 81 Arpc1b ENSRNOG00000000991 ENSRNOT00000001315 3 1 1 86 12 11256204 11256222 CTGTCCTTAGCCTGGACTG 60 11255198 11256156 TATAGGCAGAGAAGATCCTGC 59 NA Rattus norvegicus 81 Bglap ENSRNOG00000019607 ENSRNOT00000026530 2 1 1 92 2 187742038 187742256 CAACAATGGACTTGGAGCC 59 187741964 187741982 GCTAGCTCGTCACAATTGG 59 NA Rattus norvegicus 81 Olr1395 ENSRNOG00000046182 ENSRNOT00000048930 2 1 1 60 10 34693271 34693289 CATCATGCACCCTGTTCTC 59 34693313 34693331 CAAGAAGCCTCCTACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf7 ENSRNOG00000017109 ENSRNOT00000023219 2 1 1 110 1 214203897 214203915 GAGCTGAAGGTATGGGTGG 60 214203989 214204165 ACCTGTCTGGCCTATAGCT 60 NA Rattus norvegicus 81 Aldh1a1 ENSRNOG00000017619 ENSRNOT00000024000 3 1 1 80 1 238232234 238232253 GGCAAGAAATTTCCTGTCCT 59 238232296 238238352 GTCAACATCTGCCTTGTCC 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000043348 ENSRNOT00000064521 2 1 1 105 X 123707220 123707238 GAATCAAGCGATTCCTGGC 59 123705412 123707156 TGTCTTCTCTTAGAGTTGTACCTG 60 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529,ENSRNOT00000078477 1 2 2 80 1 104696254 104696272 CCTCATCAAGGACCTCCAG 59 104696314 104706558 ATCTTGTCATTTGCTACGACC 59 NA Rattus norvegicus 81 Kera ENSRNOG00000004635 ENSRNOT00000006234 2 1 1 60 7 38860504 38860523 CTACAGCATCTACACCTGGA 59 38864613 38864634 GACATATTACCGACATGTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 AC118833.1 ENSRNOG00000038412 ENSRNOT00000058502 1 1 1 60 19 54174198 54174216 CAGACACGTGTCAATGCTG 60 54174108 54174126 CACCTTCAATGATGGGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Dohh ENSRNOG00000004259 ENSRNOT00000005640 1 1 1 80 7 11193751 11195809 ATAGTCGAAAGCAGGCAGG 60 11193689 11193709 CTACCTCCTGTTCTGTTACCA 59 NA InUTR Rattus norvegicus 81 Trim54 ENSRNOG00000006146 ENSRNOT00000008113 3 1 1 84 6 26603837 26603855 GATGACGAGGTGACTTTGG 58 26603495 26603789 ATCAGTGCAAACCTTCTGG 58 NA Rattus norvegicus 81 Zfp407 ENSRNOG00000043357 ENSRNOT00000065201 3 1 1 82 18 81170191 81199046 GACTACAGGTCAAACTGTGC 59 81170128 81170147 CAGTTGTACATCTTGACGCC 59 NA Rattus norvegicus 81 RGD1560470 ENSRNOG00000033863 ENSRNOT00000040995 1 1 1 60 3 2802225 2802243 CTACTCTCGATCCTGGGAC 58 2802183 2802201 TCCTAGAGGGTCTTCACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 3 2 2 88 6 126710723 126710746 GTGCTAATGCATCTAACTATCCTC 59 126708770 126710681 GGAAGATGTTCCTATGAAAGTCTG 59 NA Rattus norvegicus 81 Dpp8 ENSRNOG00000019105 ENSRNOT00000025873 2 1 1 80 8 70566423 70568261 GGATATCTTCCGGGTTGCT 59 70568304 70568323 ATATAGCGCTCCGTGTATCC 59 NA Rattus norvegicus 81 RGD1564801 ENSRNOG00000048095 ENSRNOT00000074520 2 1 1 60 1 75153689 75153707 GACATGGAGTGTGACCCTC 60 75153647 75153666 CACAGTGATCGAAGAACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c22 ENSRNOG00000021924 ENSRNOT00000054724 3 1 1 82 1 259282793 259284741 CCAAGGGTTAGGCATTGTC 59 259282729 259282750 CCATAGACCTTAAGACCATGAG 58 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 1 2 2 80 5 147825163 147825181 ACGTCTATGAGATGGAGGG 58 147824994 147825119 ATTCTTTCCCAAAGGCCTG 58 NA Rattus norvegicus 81 Olr550 ENSRNOG00000048383 ENSRNOT00000051768 2 1 1 60 3 74997217 74997237 CTCTAATTTACAGCCTGAGGA 57 74997177 74997197 CTACAAATTGACCTCTTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000001564 2 1 2 96 20 10267455 10271426 GTTCAAAGATGTGGTGGGAG 59 10271485 10271503 GTAAGAACTGGGTGGAGGG 59 NA Rattus norvegicus 81 Kctd3 ENSRNOG00000002627 ENSRNOT00000003556 3 1 1 81 13 107460638 107461243 ACTATTAGGCTGGGAGTCC 58 107460575 107460593 CATAGGCAGCTACAATCCA 57 NA Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000076021 1 1 2 121 12 11272960 11272978 AGGGTCTCCGGATAATGTG 59 11272857 11272875 TGTGACAGTGTTTCCTGGG 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Rpl7a ENSRNOG00000049097 ENSRNOT00000006754 1 1 1 88 3 4869034 4869052 ATCATCAAGGGAAAGGCCA 59 4869104 4869335 TTGTCTTCCGAGTTCACCT 59 NA Rattus norvegicus 81 P3h2 ENSRNOG00000055751 ENSRNOT00000089540 1 1 1 80 11 78135630 78135650 ACTATAAAGCCACAGCAAGAG 58 78135689 78139490 CTCCAGCATTATAGCTTTCCAG 59 NA Rattus norvegicus 81 P3h2 ENSRNOG00000055751 ENSRNOT00000089540 2 1 1 80 11 78165096 78169567 GAGAATTGGAGCGGATACAG 58 78169607 78169628 TAATATTCAGTCCATGCTTCCC 58 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 3 2 2 60 10 47340653 47340671 GATGAGGTGGCTACAGACC 60 47340695 47340713 GCCTGTCAAAGTCATGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 2 2 2 105 10 47767080 47767099 TGTTGACTTCTCCATCTCCC 59 47767166 47767554 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 3 2 2 106 10 47767079 47767099 ATGTTGACTTCTCCATCTCCC 60 47767166 47767554 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000076609 2 1 2 95 2 184309489 184309508 GATGAGGAGCAGATGAATCG 58 184309320 184309431 AGAGTCCTCATCATTCCGC 59 NA Rattus norvegicus 81 Tas2r124 ENSRNOG00000021430 ENSRNOT00000030813 3 1 1 60 4 166912230 166912252 CAATTCCAGAGAAGATAGAGACC 58 166912269 166912290 CATAATTCCTAAGGCATTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fscn2 ENSRNOG00000036700 ENSRNOT00000054975 3 1 1 87 10 109534473 109538570 GAGGCAAGGAATCAATGTCTC 59 109538618 109538637 CTTCTTTGTCTCCTGGTCGA 60 NA Rattus norvegicus 81 Lmx1b ENSRNOG00000017019 ENSRNOT00000022953 1 1 1 80 3 12612383 12614348 AGTCTGACTCTGTGAAGAGTG 59 12612323 12612341 CACTGCCCTTATTCTGGCT 60 NA Rattus norvegicus 81 Atp5g3 ENSRNOG00000001596 ENSRNOT00000058234 1 1 1 80 3 60811473 60811916 TATGCCAGAAACCCTTCAC 57 60811411 60811429 GAGACCCATAGCTTCAGAC 57 NA Rattus norvegicus 81 LOC681282 ENSRNOG00000034107 ENSRNOT00000041750 2 1 1 95 7 118024223 118024554 CGAAACAGAAAGAGCAGGC 60 118024613 118024631 CAAACAAGGAGCGCATCAG 60 NA Rattus norvegicus 81 AABR07017681.1 ENSRNOG00000049482 ENSRNOT00000073984 2 1 1 68 15 30019004 30019022 CTAGGCCTTCACCTGTCTG 60 30018817 30018835 ACTTTGTTTCACCTGCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Sys1 ENSRNOG00000014480 ENSRNOT00000030054 1 1 1 60 3 160911058 160911077 TCTCAATGATGTCCTTCGTC 58 160912074 160912092 ATGAAGTACAGCAAGCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000004776,ENSRNOT00000020608 2 3 3 80 14 21072208 21073418 TTTAAGCTGCAGAGTTCAGAC 59 21072148 21072169 CATCTGATTGGTCTTCTCTTCC 59 NA Rattus norvegicus 81 RGD1563780 ENSRNOG00000047338 ENSRNOT00000068439 2 1 1 83 15 30161229 30161421 GATTTGCTGGGTGAGAGGA 59 30161164 30161183 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000034083 2 1 3 80 X 123891200 123892552 CCTATAATGCTCCATCGTCC 58 123891139 123891159 GGTCTGTAAATCTGTCATGGA 58 NA Rattus norvegicus 81 Mepce ENSRNOG00000045911 ENSRNOT00000073353 2 1 1 139 12 21723413 21724515 TCGTCACGGGTAACTATGTC 59 21724617 21724635 GCGGAACATTCTCTTCAGC 59 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925,ENSRNOT00000036744 2 2 2 80 12 17013602 17013705 ACTCATGTACAAGTCCAAGG 57 17013748 17013766 TTCTCCATCAGTCTACGCA 58 NA Rattus norvegicus 81 Arhgap21 ENSRNOG00000008659 ENSRNOT00000068156 2 1 1 80 17 87746282 87749842 GAGAAGACGCAAAGTTATCCT 58 87744198 87744217 CTTCTGATGACTTCTGGCTG 58 NA Rattus norvegicus 81 Cmtm2a ENSRNOG00000025420 ENSRNOT00000061648 3 1 1 80 19 880216 880236 CTGTTTGAACTGAAAGAGGGC 60 880275 880399 TATGCAGCCCAAAGTTATAAGC 59 NA Rattus norvegicus 81 LOC685438 ENSRNOG00000050981 ENSRNOT00000064787 3 1 1 80 12 21362111 21362131 CTGAACAGAATCTGGCTATGG 59 21361756 21362072 ATCCTAATGAATTCCCAGTGTG 58 NA Rattus norvegicus 81 Nol3 ENSRNOG00000015588 ENSRNOT00000020908 3 1 1 157 19 37235329 37235347 CAAACTGTGAGCATGCCAG 60 37235603 37235621 TCTTCCTCTGAAGCTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Capn6 ENSRNOG00000004882 ENSRNOT00000006638 1 1 1 80 X 115052729 115054093 AGAATCCTCAGTACATCTTCAC 57 115052670 115052688 AAGTGCGTAGATCCTTCTG 57 NA Rattus norvegicus 81 Igip ENSRNOG00000049067 ENSRNOT00000073131 1 1 1 60 18 29124441 29124459 ATCATACGAAGAAGCGCAG 58 29124480 29124501 GAGAACATGACAGCAAATATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd6 ENSRNOG00000011657 ENSRNOT00000015517 1 1 1 60 15 61692395 61692413 AGGATTTCCAAGCCCTCTG 59 61692435 61692455 CCGTGTCCTTTAATTCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a10 ENSRNOG00000002397 ENSRNOT00000049499 3 1 1 80 13 103404450 103404469 TCATCAAGGAGACTGCTGTC 60 103404512 103405665 TAGACAGCTGGCTCATCAG 59 NA Rattus norvegicus 81 Ns5atp4 ENSRNOG00000027533 ENSRNOT00000031887 3 1 1 60 3 35542240 35542259 ATTCAGGTCACGTATCTGTC 57 35542199 35542217 GTTCGAGGAAGTGCTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499544 ENSRNOG00000030204 ENSRNOT00000046715 1 1 1 81 2 61999347 61999366 TTTACCCTCTCAAGAACGTG 58 61999410 62004879 CTTCCTGTGAACAGCAGAG 58 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000088819,ENSRNOT00000066004,ENSRNOT00000079954 1 3 7 60 2 186117163 186117185 CTGAATAGAAGTGAGTCCTTGAG 59 186117125 186117143 TCCCAAAGTCAGGAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mllt10 ENSRNOG00000022249 ENSRNOT00000034157 1 1 1 80 17 84936770 84936790 GAAATCTTCAGCTCACAGCTC 59 84936829 84936861 CTAGATGCTGACATTGTTCCTG 59 NA Rattus norvegicus 81 Rrp1b ENSRNOG00000001194 ENSRNOT00000001583 2 1 1 80 20 10863016 10863034 CCTCAGTCAGAGAAGGCAC 60 10863078 10863751 ACTGTGTTTCCTTCCTCCC 59 NA Rattus norvegicus 81 Tas2r130 ENSRNOG00000005645 ENSRNOT00000007435 1 1 1 60 4 165747077 165747100 CTGGATGAAGAATAGGAAGATCAC 59 165747040 165747058 GGACATAGCCAGACTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r136 ENSRNOG00000029561 ENSRNOT00000052034 1 1 1 60 4 166978502 166978522 GACTTTGTATCCTTCAAGCCA 58 166978462 166978483 CAGTTTGATCCTCCTATTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prcc ENSRNOG00000012933 ENSRNOT00000017735 1 1 1 80 2 187257324 187257343 CCAAGCCAAAGAAGAGAACC 59 187246433 187257285 CATCTTCCTCAGAATCTGAATCG 59 NA Rattus norvegicus 81 Iqub ENSRNOG00000021729 ENSRNOT00000064983 3 1 1 80 4 51513673 51526743 AATGCTCTAGAACTTTGGCG 59 51513612 51513631 CAGAGCAGCTTTCCTTTCAG 59 NA Rattus norvegicus 81 Tm4sf20 ENSRNOG00000015460 ENSRNOT00000020880 3 1 1 80 9 88524545 88524567 ACCTCTAGTTTGTAACACTCAGG 60 88522268 88524508 TCAGGACGAAAGTTACTTAGGT 59 NA Rattus norvegicus 81 AABR07042599.1 ENSRNOG00000050134 ENSRNOT00000071393 2 1 1 80 19 212504 212525 AACTTAGAGATGGAGAACACTG 58 212565 213217 GAGCAGGTTTCTAGAGAAGG 57 NA Rattus norvegicus 81 Dkk1 ENSRNOG00000048688 ENSRNOT00000074393 2 1 1 105 1 248897973 248898208 GACAACTACCAGCCCTACC 60 248897886 248897905 AGATTTGTACACCTCCCACG 60 NA Rattus norvegicus 81 Znhit6 ENSRNOG00000030049 ENSRNOT00000041897 1 1 1 80 2 251454238 251454256 ACGAAGGTGAAGGAAGAGC 60 251454300 251455276 ACAAGTCTCACACCTCGAC 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 1 1 4 105 9 81577355 81577699 ATGAACTACGGGCTGACAC 60 81576553 81576573 CCTCCTCACTATAGTCATGGC 60 NA InUTR Rattus norvegicus 81 RGD1564634 ENSRNOG00000029824 ENSRNOT00000046324 2 1 1 60 15 108956621 108956639 CTACAATGTCACCCAGCAC 59 108956662 108956681 AGTCTTGCCCTTAATTTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgcr8 ENSRNOG00000001886 ENSRNOT00000002581 1 1 1 80 11 86864192 86867612 AAGAATAAAGCTGCCCGAG 58 86867655 86867674 GTCTTTAGGCTTCTCCTCAG 57 NA Rattus norvegicus 81 Rpf2 ENSRNOG00000000587 ENSRNOT00000000717 2 1 1 80 20 45332860 45332878 GAAGTCGGACTGTTCTCTG 58 45331679 45332819 TCATACATACGACCTATCACGA 58 NA Rattus norvegicus 81 Itpkb ENSRNOG00000002969 ENSRNOT00000004032 1 1 1 80 13 98705839 98706923 GAACATCCTGATTGCCTACC 59 98706966 98706984 TCATGGCACTTGAAGAAGG 58 NA Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 2 2 2 80 10 47021731 47021749 GTGAAGCACTGGATTTCCT 58 47021793 47025677 AGAGGCCACTCTTTGTAGG 59 NA Rattus norvegicus 81 Tmem74b ENSRNOG00000009635 ENSRNOT00000012765 3 1 1 60 3 147226607 147226625 CGTATGAGGCAACTCACTG 58 147226649 147226667 CTTGGACAACCTCGTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 1 2 2 80 18 69743027 69743048 TGTGGCTTTAGCTGTTATTCTC 59 69742164 69742986 GATGTCAGTGCCTTTGCAG 60 NA Rattus norvegicus 81 Triap1 ENSRNOG00000047812 ENSRNOT00000075320 1 1 1 80 12 47031401 47031419 TTCTCAAAGGAGACGGCTC 59 47029932 47031359 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Arhgap10 ENSRNOG00000013152 ENSRNOT00000017867 1 1 1 80 19 34272085 34272107 CAGTTGGATAAGATGGGATTCAC 59 34272143 34292228 CAGTCCTTGGTCATTTATACCTC 59 NA Rattus norvegicus 81 Ins1 ENSRNOG00000012052 ENSRNOT00000016052 2 1 1 171 1 272799819 272799956 GCAAGCAGGTCATTGTTCC 60 272800090 272800109 GTAGAAGAAACCACGTTCCC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Pla2g12b ENSRNOG00000046619 ENSRNOT00000074524 1 1 1 80 20 28989795 28998169 TGTCGATATGGAAAGGCAC 58 28998213 28998231 ACCCAGGAAATAGGAACCA 58 NA Rattus norvegicus 81 Spata45 ENSRNOG00000039841 ENSRNOT00000061146 1 1 1 60 18 19149270 19149291 GAATGTCAAGGAATCTGTTCCC 59 19149231 19149250 AAAGAGATCCCGTTCGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 1 2 2 60 1 79899815 79899834 AACGGTATGTGTTGTCAGAG 58 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 Olr1415 ENSRNOG00000026695 ENSRNOT00000039778 2 1 1 60 10 43930530 43930551 GCTATTCTGAGAATGTCTTGTG 57 43930491 43930512 TTGACACAAACTTCACCATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1595 ENSRNOG00000022329 ENSRNOT00000004677 2 1 1 60 13 92242033 92242051 ACATTGCTGTCTTCCTGCT 60 92242070 92242093 GCAGAGAATCGAAGATACATAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc5b ENSRNOG00000019846 ENSRNOT00000028967 3 1 1 80 1 214781197 214781590 AAGCATAAGTGCCTTACACC 58 214781630 214781651 CCATCGAAGGTCTTATAATGGA 58 NA Rattus norvegicus 81 Vom1r89 ENSRNOG00000030085 ENSRNOT00000042169 2 1 1 60 4 97567383 97567401 TACCAACGTGAGTGAGACC 59 97567341 97567359 CATGGGAAAGAGTGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ythdc1 ENSRNOG00000001996 ENSRNOT00000002736 3 1 1 80 14 22987983 22990510 AGGAACAGATGGATCAGATGAG 60 22987924 22987946 CCACTTCTATCAAAGACAATGGG 60 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000011226 ENSRNOT00000015043 3 1 1 81 X 105355613 105355631 CATCGAGGTGGAGACACAG 60 105352712 105355568 ATCCATGCACTTCTCCCAG 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962 3 1 10 81 15 32796582 32852780 TTAGGGTCCATCCAAATGTC 57 32852822 32852842 CAGAGGGTGATGTTATCAGAC 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000070848 3 1 10 81 15 32809122 32852780 ACTGAAGGTTATACCACATGTC 58 32852820 32852840 GAGGGTGATGTTATCAGACTG 58 NA Rattus norvegicus 81 Lrrn4cl ENSRNOG00000026302 ENSRNOT00000036454 3 1 1 124 1 225048299 225048895 TACCCACTGGTCTTGTCCT 60 225048983 225049001 CTTGGGAAACCAAGGAGGT 60 NA Rattus norvegicus 81 Pcdhga3 ENSRNOG00000039461 ENSRNOT00000060472 1 1 1 60 18 30821860 30821879 CTTTGCTCCTTTGACTACGA 58 30821902 30821920 TGTCCCTGGCTGTTATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga3 ENSRNOG00000039461 ENSRNOT00000060472 3 1 1 60 18 30821638 30821657 ACAGACATCAATGACAACCC 58 30821676 30821698 CTGGGATATAGGCTAAATAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx2 ENSRNOG00000055672 ENSRNOT00000080270 3 1 1 85 6 99842961 99842979 AGCTCAATGAGTTGCAGTG 59 99840618 99842912 ACAGTTCTCCTGATGTCCG 59 NA Rattus norvegicus 81 Sart3 ENSRNOG00000000702 ENSRNOT00000000891 3 1 1 80 12 48637536 48638657 GAAGGACTACATCTGTCCGA 59 48638700 48638718 TCTAGGCCACCTTTCTGAC 59 NA Rattus norvegicus 81 LOC501618 ENSRNOG00000037711 ENSRNOT00000057217 2 1 1 80 X 105427943 105427961 GGAAACTGAGTCTCAGGGA 58 105428002 105428246 CCTCCAGCCATATTATTTCCTG 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568,ENSRNOT00000090355 2 2 2 80 3 119376235 119376254 ATTACTGCCTCAATCGTTGC 59 119365160 119376193 GTAGTCCATCACCTGGTAGC 60 NA Rattus norvegicus 81 Rbm17 ENSRNOG00000018767 ENSRNOT00000025550 3 1 1 80 17 70599688 70600862 GAGTCTCAGGATGCATCCA 59 70600904 70600924 CAGCAAGACCACTTTAGTAGG 59 NA Rattus norvegicus 81 Ttc30b ENSRNOG00000059460 ENSRNOT00000050515 2 1 1 60 3 62760452 62760470 AGAGCAGAGGAAGAGTTGG 59 62760410 62760429 CATCCATGTTCATCAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 2 2 2 80 4 100299315 100299333 CTAAACTGGCTGAGCTACG 58 100299079 100299273 TATACTGCACAGTCACTTGAG 58 NA Rattus norvegicus 81 Nova2 ENSRNOG00000013847 ENSRNOT00000057965 3 1 1 87 1 79848609 79855870 GACTTCTACCCAGGAACTACAG 60 79855917 79855936 TTTCTGCGATAAAGCTGTGG 59 NA Rattus norvegicus 81 LOC500877 ENSRNOG00000029292 ENSRNOT00000043257 3 1 1 80 7 101134611 101134630 TGGAGTCTACAATGGGAAGG 59 101123635 101134569 CTTGCAAATATCCTGAGGCT 58 NA Rattus norvegicus 81 Clybl ENSRNOG00000014075 ENSRNOT00000018918 1 1 1 80 15 108813382 108813400 GATTGGACCTCAAGTGGGT 59 108813444 108814754 CTTGTTGCACCTATGCTGG 59 NA Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 3 2 2 85 7 142759248 142759266 CTTAGACCTCCAGGGAAGC 59 142759315 142759338 CGTGGTTCACTTTCCTCCT 60 NA Rattus norvegicus 81 Ubxn2a ENSRNOG00000004950 ENSRNOT00000006668 3 1 1 80 6 28978533 28980226 GACTAGGAAGTGCTACACCA 59 28978472 28978490 AAACAGCAGACAAAGTGCT 58 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000048115 ENSRNOT00000075625 3 1 1 92 15 30926973 30927086 CTTTCTCATGAGAGTTGCCC 59 30927141 30927159 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Myl6b ENSRNOG00000028837 ENSRNOT00000048453 1 1 1 90 7 2911778 2912334 TCTCCAAAGTGGTGATCGAG 60 2911488 2911506 ATCTTGCCATCACCCACTC 60 NA Rattus norvegicus 81 RGD1562265 ENSRNOG00000032454 ENSRNOT00000042939 3 1 1 60 5 44270369 44270387 GGTTGCAGTTGCATAGTGG 60 44270409 44270429 TGATGACATCCTTGTCCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cadps2 ENSRNOG00000007636 ENSRNOT00000068404 2 1 1 80 4 50374387 50384630 CTGCTGGTTTCAAAGTTCGT 59 50374326 50374345 TGAGAAGAAAGTGCCTTCGT 60 NA Rattus norvegicus 81 AABR07003433.1 ENSRNOG00000037133 ENSRNOT00000056014 1 1 1 80 1 109666708 109666744 GAACCAGCCTTCAGGAGAG 60 109666786 109666806 CTGTATCTTTGGAAGCTTGGG 59 NA Rattus norvegicus 81 Olr471 ENSRNOG00000031124 ENSRNOT00000045693 1 1 1 60 3 73345284 73345305 TTTGTAAGTCCCATGTTGAACC 59 73345324 73345344 CGTGTTTCACATCCTTATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb3 ENSRNOG00000020095 ENSRNOT00000027216 1 1 1 60 18 30382467 30382489 GGAAATGCGTAGTCATAGTTCAG 60 30382509 30382527 AATGTCAGTTCTGGTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thoc1 ENSRNOG00000015332 ENSRNOT00000046718 3 1 1 80 18 1148682 1149647 CACTTGGAAGTCAAACCTCTC 59 1149688 1149707 AAACAATATTGCTGACGCCA 59 NA Rattus norvegicus 81 Zbtb2 ENSRNOG00000019544 ENSRNOT00000026433 1 1 1 80 1 40917043 40921262 TCAGACCAGTGAATGTGTCC 60 40916982 40917000 GTGTACATCAGGTGGAGCA 59 NA Rattus norvegicus 81 Zfyve1 ENSRNOG00000008614 ENSRNOT00000011662 3 1 1 80 6 107077935 107077954 AGAGGAGGAAGATGACAGAG 58 107056455 107077894 CCTCTTCATTTGTTACCTGGA 58 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562,ENSRNOT00000078675 1 2 2 80 10 51727832 51729442 GTGCCAAGACTGAAGACTC 58 51727770 51727791 GGAGAATGTGCATATTAACCAG 57 NA Rattus norvegicus 81 Nyap1 ENSRNOG00000050511 ENSRNOT00000059602 3 1 1 88 12 21773012 21773030 GATCCACCATGATCGAGGA 59 21773081 21773846 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Cilp2 ENSRNOG00000020622 ENSRNOT00000027990 2 1 1 80 16 21291951 21292157 CTTGAAGAGTTAGGGAAGCC 58 21292199 21292218 GCAGAAGGTCACATTCTGAC 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 1 2 2 80 10 11856975 11856993 GCTGAGAATACTCTGCGTC 58 11853798 11856931 GTCGTCATTGCTTCCACTC 59 NA Rattus norvegicus 81 Stk26 ENSRNOG00000007879 ENSRNOT00000010596 2 1 1 80 X 138092258 138092277 CACCCTGAATGGAGTTTCAC 59 138092319 138092946 CACAAGATCTTGCTCTTCCC 59 NA Rattus norvegicus 81 Tnfsf4 ENSRNOG00000002968 ENSRNOT00000003969 1 1 1 82 13 79290222 79292358 CAGTTACCGGATGTGAGGG 60 79292404 79292422 CGAATTGTTCTGCACCTCC 59 NA Rattus norvegicus 81 Pdlim5 ENSRNOG00000016419 ENSRNOT00000022387 1 1 1 80 2 247933355 247985446 GACAATCTCTAGTCTGAAAGATGG 59 247933298 247933317 CCATCAATGCTGAGAACCAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 1 3 3 80 4 183406545 183408840 GAGTTTAAACGCCACAATTCTG 59 183406486 183406507 CTGGTTACTATAGCATGGAGAC 58 NA Rattus norvegicus 81 Hyal6 ENSRNOG00000021695 ENSRNOT00000009435 2 1 1 81 4 52138269 52141003 TCTGATACAAAGGAGACTTGCT 59 52141040 52141063 CTGATGTTACATTGAGAGCATAGG 60 NA Rattus norvegicus 81 Perp ENSRNOG00000011994 ENSRNOT00000016037 2 1 1 83 1 14233489 14235436 ACTGGCTGCTGTATTCCAG 60 14235483 14235501 GCGGGATTATCATGAAGCC 59 NA Rattus norvegicus 81 Perp ENSRNOG00000011994 ENSRNOT00000016037 3 1 1 85 1 14233489 14235436 ACTGGCTGCTGTATTCCAG 60 14235484 14235503 CAGCGGGATTATCATGAAGC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000078543 2 1 8 159 3 100787465 100787486 CACTCTGTGTAGTTTCATTGTG 58 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083542 1 1 8 106 3 100769264 100815565 AAAGCCACAATGTTCCACC 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 LOC100362109 ENSRNOG00000030150 ENSRNOT00000048614 1 1 1 97 7 123296378 123299711 AGGAACGTCACTAAGGTGC 60 123299770 123299790 TTTCCGTGAGTGAAGAATTGG 59 NA Rattus norvegicus 81 LOC691153 ENSRNOG00000048187 ENSRNOT00000072274 3 1 1 72 10 85573753 85573772 ATTTCAATCGTCTGATCCGC 59 85573700 85573718 AAACTTGGAGTGTCCAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837 3 1 2 80 11 84533139 84533157 TGCTTATGGAGAGTGCGTC 60 84533933 84534700 GGAACAAAGAACCTTTGATGCT 60 NA Rattus norvegicus 81 Ap3b2 ENSRNOG00000019249 ENSRNOT00000026030 3 1 1 80 1 143307153 143315435 CTACAAGCGGCATGATGAC 59 143307091 143307109 ACAATCCTCTTCATGGCCT 59 NA Rattus norvegicus 81 Mir708 ENSRNOG00000040447 ENSRNOT00000062200 2 1 1 60 1 161221259 161221278 GAGCTTACAATCTAGCTGGG 58 161221300 161221319 AAGCTCACAGTCTAGTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912431 ENSRNOG00000049332 ENSRNOT00000072248 1 1 1 60 3 73509468 73509487 TTCTACTGTGATGACATGCC 58 73509427 73509449 GCTGTTTGTAGTGAGTATCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912283 ENSRNOG00000049757 ENSRNOT00000074839 2 1 1 81 10 70655929 70658457 GATAAACACGGCGTGAAGAC 60 70658501 70658519 AATCGTCCTCCAGTTCCTC 59 NA Rattus norvegicus 81 LOC100910318 ENSRNOG00000004419 ENSRNOT00000006006 2 1 1 60 10 37130641 37130660 GATGTGAGGCAAGAAGATGG 59 37130600 37130623 TGATGTATAGATCGTAGACGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786,ENSRNOT00000085211,ENSRNOT00000057395 2 3 3 80 13 103255834 103255852 AAGGAATGTTCACCAGTGC 58 103255157 103255792 TCTTTATAACCACATCGGTCC 58 NA Rattus norvegicus 81 RGD1306195 ENSRNOG00000031013 ENSRNOT00000050030 3 1 1 85 5 54481793 54482034 CAGGCAAGTGGGATATTGTG 59 54481727 54481745 CAAGCTTGAACTGGACTGG 59 NA InUTR Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 1 2 2 80 3 8974316 8974810 GATTGACAACGAGACGCTG 59 8974254 8974277 GAAGACAGGATCTGATAATACTGG 58 NA Rattus norvegicus 81 Mapk7 ENSRNOG00000002412 ENSRNOT00000057864 1 1 1 80 10 47772793 47772814 GACAATATCATCGCCATCAAGG 60 47771456 47772753 GTCCAGTACCACGTAGACAG 60 NA Rattus norvegicus 81 AABR07027819.1 ENSRNOG00000031902 ENSRNOT00000041103 1 1 1 60 17 45286303 45286322 CACAGGTGAACTCAGAAGAC 58 45286262 45286281 TTGGCCCTAATAGCTTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 1 2 2 80 6 125661175 125661193 ATGGTTCTTTCATCTGCCG 58 125657803 125661132 TGCACTCATCCATATCACTG 58 NA Rattus norvegicus 81 AABR07017768.2 ENSRNOG00000046943 ENSRNOT00000073533 3 1 1 62 15 30827327 30827439 GGGATAAACTTTCTCCTGAGAG 58 30827461 30827480 GACACGAACATCAGGTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 3 7 12 96 20 3352061 3352081 TGTACTAAAGGACACCTCAGC 60 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Rnase17 ENSRNOG00000050295 ENSRNOT00000048941 2 1 1 60 15 28204555 28204578 CATCTATAATAGGGCTTATCCACG 59 28204518 28204538 GGTGAATCTGTTTCTGTGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051426.1 ENSRNOG00000047642 ENSRNOT00000073625 1 1 1 80 3 10900660 10900678 CAGCAGCTATGGATACAGG 58 10894099 10900618 CTTTCCCAGGATTACCTTCTG 58 NA Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000079251 3 1 2 182 5 107841118 107841136 TGGTCACTGTGAGGATTCG 59 107825415 107840972 CATCATCACCTGGTCCAGG 60 NA DesignRelaxed Rattus norvegicus 81 Tex261 ENSRNOG00000013712 ENSRNOT00000065847 1 1 1 80 4 115449469 115450232 ATATTATCCTTTCTCTGAGGTCCTG 60 115449413 115449432 GAGAGTGACACGAAGAAAGC 59 NA Rattus norvegicus 81 Tcl1a ENSRNOG00000025233 ENSRNOT00000029346 2 1 1 110 6 128890700 128894594 CGATAGTCATCAAGAGTAACGG 59 128890611 128890629 TTAAAGGCAGCTCATACGG 58 NA Rattus norvegicus 81 Sec31b ENSRNOG00000025781 ENSRNOT00000035758 3 1 1 80 1 264277556 264278426 CCACAGAAGACACTGATGG 58 264277494 264277512 CTTTCAGACAGAGCTCCAC 58 NA Rattus norvegicus 81 Abhd16b ENSRNOG00000015067 ENSRNOT00000020210 1 1 1 60 3 176986858 176986879 TGGTTTATGGCTGGTCTATAGG 60 176986900 176986918 TCTGGGTAAGTCATGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pofut2 ENSRNOG00000001228 ENSRNOT00000001644 2 1 1 80 20 12128594 12128612 GAGAAGAATTCTGGCCTGG 58 12127055 12128552 CATCATACAGAAGGTACCGTC 58 NA Rattus norvegicus 81 LOC500956 ENSRNOG00000020580 ENSRNOT00000027949 1 1 1 80 8 21892884 21893033 CAAGATATCCAGGCAGTAGC 58 21893076 21893094 GTCATCTTGGGCTCTTTGG 59 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 1 2 2 80 7 121144316 121144334 ATACAGCACATGGGAACCA 59 121141736 121144273 CGGTCTTTCTCCTCCTTCTC 60 NA Rattus norvegicus 81 LOC680964 ENSRNOG00000047566 ENSRNOT00000071058 1 1 1 60 4 36755739 36755757 TAAAGGGAAGAGTGGAGCG 59 36755697 36755716 ATCTGTAGTTTGCTGGTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf21b ENSRNOG00000013067 ENSRNOT00000017906 3 1 1 80 7 125713773 125713792 GACTGGCCTCCAGTTATCTC 60 125715208 125716873 TGATTTCACCCTTCCAGCA 59 NA Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 2 2 2 80 10 109107494 109122262 TGTCTACAAGACCATCATGGA 59 109122301 109122322 AGTGCTTTCTCATAGTTCTTCC 58 NA Rattus norvegicus 81 Mgat4b ENSRNOG00000003235 ENSRNOT00000004323 1 1 1 80 10 35733850 35733868 GAAGAACTTTGCCCTCCAG 59 35733911 35734187 AACATCTTCCCAATGAAGCC 59 NA Rattus norvegicus 81 Car7 ENSRNOG00000012371 ENSRNOT00000016521 1 1 1 80 19 637307 637786 AATCTCTGAGAGGCAGATGG 59 637246 637266 TTGTTCACCATGTGAATCCTC 59 NA Rattus norvegicus 81 Car7 ENSRNOG00000012371 ENSRNOT00000016521 3 1 1 80 19 637307 637785 ATCTCTGAGAGGCAGATGG 58 637245 637265 GTTGTTCACCATGTGAATCCT 59 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515,ENSRNOT00000019577 3 2 2 80 19 42148976 42149079 ATCATGAAGGACATGATGAAGC 59 42148917 42148936 GTCCTTCTTCTCGATGACAC 58 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933,ENSRNOT00000088121 3 2 2 80 1 190352253 190352366 ACCCACAGCTAAGAGTACC 58 190352409 190352428 CTGAGCAGCAGTGTAAAGAC 59 NA Rattus norvegicus 81 Araf ENSRNOG00000010838 ENSRNOT00000039911 3 1 1 80 X 1386144 1386162 ATCCGCTCCACATCTACTC 59 1385984 1386100 AGCAGTAAACTGCATGAGG 58 NA Rattus norvegicus 81 Itgbl1 ENSRNOG00000004516 ENSRNOT00000006264 1 1 1 80 15 110371872 110371891 ATGACCGAAGAACAAAGCAG 59 110371933 110376969 TCCACAATGACAAGAACCCT 59 NA Rattus norvegicus 81 Lingo2 ENSRNOG00000005634 ENSRNOT00000007449 3 1 1 60 5 51468140 51468159 ACACCTTGTATACCTGACCC 59 51468099 51468118 TGCTTCAATAGTGCTGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000082582 1 1 2 172 1 107345218 107362386 AGATAAGAGAATGATGCTGCAC 59 107362519 107362537 TCATGTCCTTCAGGGTTGG 59 NA InUTR Rattus norvegicus 81 Arvcf ENSRNOG00000001888 ENSRNOT00000044635 2 1 1 80 11 86738493 86738609 GAAAGCACACTTCCAGTCTG 59 86738432 86738450 AGTGTGCTGTCATCAAAGC 59 NA Rattus norvegicus 81 Agtrap ENSRNOG00000008619 ENSRNOT00000011747 2 1 1 80 5 164891119 164891637 CCATTGGCATGTTTCTTGGT 60 164891058 164891078 CAACGCTTGAGTAGAAGATGC 60 NA Rattus norvegicus 81 RGD1563782 ENSRNOG00000042711 ENSRNOT00000063878 3 1 1 82 11 86918848 86918951 ATTACTGAGGTGTGGGACG 59 86918784 86918803 CTTTGACGACCTACCAGGAG 60 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 1 3 3 80 13 85398133 85398153 CTCAAAGAAATCACCGAAGGA 58 85397249 85398091 GACTGTCTCCTCTTTCCGT 59 NA Rattus norvegicus 81 Ccdc34 ENSRNOG00000005902 ENSRNOT00000065333 2 1 1 80 3 101156647 101156666 AAGATGCCTGTGAGTCAGAG 60 101156709 101160263 ACTCAACTTCACAGCTGGA 59 NA Rattus norvegicus 81 Rela ENSRNOG00000030888 ENSRNOT00000045233 2 1 1 80 1 220996162 220996180 TAAACCGGAACTCTGGGAG 59 220996222 220996424 CCTCAATGTCTTCTTTCTGCA 59 NA Rattus norvegicus 81 AABR07001348.1 ENSRNOG00000023081 ENSRNOT00000031519 3 1 1 80 1 39709579 39709597 TCTGGAAGTTCTCCATGGG 59 39708851 39709537 CTGTTGATCTTGGCATTTCCT 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 3 2 2 80 1 56289285 56299799 GAACTGCAAAGATGTGTCCAG 60 56299841 56299859 AACACTTGCTGGAACTCCT 59 NA Rattus norvegicus 81 Tdp1 ENSRNOG00000003831 ENSRNOT00000005167 1 1 1 80 6 123927904 123947597 TGTCACAAGTGCAAATCTGTC 60 123947638 123947657 TCATAGGAGCGGATCATCAG 59 NA Rattus norvegicus 81 Egfl7 ENSRNOG00000019388 ENSRNOT00000026318 3 1 1 85 3 4041786 4041804 AATGAAGGGAGTTGCATCC 58 4041850 4042023 CATTCATCAACATCTATCTGGC 57 NA Rattus norvegicus 81 Tacstd2 ENSRNOG00000007740 ENSRNOT00000010156 1 1 1 60 4 98342306 98342324 AGCCTTCAACCACTCTGAC 60 98342264 98342284 CTTGTAGCGTTCCTTGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107,ENSRNOT00000086957 1 2 2 80 8 53420540 53420760 ATATTTCAGGCTCACTCAACAC 59 53420801 53420819 GAGAGCTGAGCAAACTCCT 59 NA Rattus norvegicus 81 LOC688970 ENSRNOG00000028913 ENSRNOT00000058760 2 1 1 80 17 89452831 89453139 TGAGATCAGCCATATAAAGGAGG 60 89453174 89453197 TCAGTGGTAAAGTTCTCGATAGAG 60 NA Rattus norvegicus 81 AABR07065493.1 ENSRNOG00000046275 ENSRNOT00000057179 1 1 1 80 6 131646195 131646214 CCATCCATGATGTCTTCAGC 59 131612904 131646152 GAGGATGGGTCTGGATGAC 59 NA Rattus norvegicus 81 Slc39a12 ENSRNOG00000025639 ENSRNOT00000044313 2 1 1 80 17 81465597 81465616 CAGAGAAGGAGACTGATGAC 57 81465657 81469396 TCTTAGTTTCCATACACGGAC 58 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537,ENSRNOT00000085877 2 2 2 81 20 31461745 31461763 GCTCTAGAGGGCCTAAAGG 59 31458347 31461700 AAGCCATCTTCTCCCAGTG 59 NA Rattus norvegicus 81 Cadm4 ENSRNOG00000024243 ENSRNOT00000026793 3 1 1 97 1 81368056 81368873 TGCTTGTGGTCTATGACCC 59 81368933 81368952 GATCAGAAACACCAGTAGCG 59 NA Rattus norvegicus 81 Shd ENSRNOG00000049983 ENSRNOT00000074767 2 1 1 80 9 11090431 11093013 CTGTCCCTCAGAAGTAACCA 59 11090370 11090388 GTGCTGTCCTAGTACCACC 60 NA Rattus norvegicus 81 Serpina6 ENSRNOG00000009438 ENSRNOT00000012500 1 1 1 80 6 127531084 127531102 AGCATGTGTTCTCAGACCT 59 127529097 127531041 GAAGTTCCCATATGCCTCTG 58 NA Rattus norvegicus 81 Serpina6 ENSRNOG00000009438 ENSRNOT00000012500 3 1 1 80 6 127531083 127531101 GCATGTGTTCTCAGACCTG 59 127529096 127531039 GGAAGTTCCCATATGCCTC 58 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 1 2 2 81 8 107633349 107633367 TAGAAACCAGTGCCAAGGA 59 107632055 107633307 GGAACCTGTTGCCTAATTACTC 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 3 2 3 80 X 72513541 72514991 CTGTGCCATCAGAATCCAG 58 72513479 72513499 ATACACATTATCTCGGACCCA 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037,ENSRNOT00000006773,ENSRNOT00000041473 2 4 4 80 7 51443422 51443440 GCAAGAAGGATGAGTCCAG 58 51441715 51443379 TTGTCTTATCTGTCTCCGCT 59 NA Rattus norvegicus 81 Uqcrc2 ENSRNOG00000036742 ENSRNOT00000021514 2 1 1 80 1 190578647 190578666 CAGTTACTCAGATTCTGGGC 58 190578706 190580977 TAGGCAGCATTGATAACATCTC 58 NA Rattus norvegicus 81 Atp6v1b2 ENSRNOG00000011891 ENSRNOT00000015931 3 1 1 80 16 22331106 22331802 CACAACAGACAGATTTACCCTC 59 22331047 22331068 CATTCCTTCTCCAATAGCTGAC 59 NA Rattus norvegicus 81 Rn60_13_0880.2 ENSRNOG00000051363 ENSRNOT00000076743 2 1 1 60 13 83034266 83034285 TGATCTGAAAGATGTGAGGC 58 83034225 83034243 TTGAGCAACTTCATGGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl39 ENSRNOG00000032835 ENSRNOT00000040815 1 1 1 60 18 6587042 6587062 TTCAGAATCAAGCGATTCCTG 59 6587002 6587021 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562532 ENSRNOG00000022890 ENSRNOT00000030112 2 1 1 80 5 122779186 122786229 AAGTATCCAATGCTGACCAG 58 122779125 122779146 TTCTACTAGAATCTGCTGAGTG 57 NA Rattus norvegicus 81 RGD1311164 ENSRNOG00000055036 ENSRNOT00000089513 1 1 1 80 4 159508082 159508100 GCTGTACCCACGATATCAC 58 159508141 159513292 ACCAAGGTATAGTCATTTCCTC 57 NA Rattus norvegicus 81 AABR07005416.2 ENSRNOG00000048649 ENSRNOT00000072650 1 1 1 60 1 182843035 182843054 CACCTACGAGAAAGATCCAG 58 182843075 182843095 ACCTTCTGTGTAATCATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844,ENSRNOT00000079539 1 2 2 80 19 43840339 43840357 TGTGATCAACCTGGAGGTG 59 43839960 43840296 GCACTCTTCCTATAATGGCG 59 NA Rattus norvegicus 81 Mdh2 ENSRNOG00000001440 ENSRNOT00000001958 3 1 1 84 12 23946089 23946107 CCATTGTGGCCACATTGAC 60 23945841 23946042 GTGGAGTTAACTGGGTTGGA 60 NA Rattus norvegicus 81 Tm9sf3 ENSRNOG00000013443 ENSRNOT00000018043 1 1 1 80 1 260487073 260487092 GTCTATGCTGCTACATCTCC 58 260484380 260487031 CTTTATCCATCGCCTTCCTC 58 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 2 2 2 80 X 124895860 124895880 TTTCCAGGTATTGAACCATGG 58 124895922 124896423 TATGTGTTCATGGCATCGG 58 NA Rattus norvegicus 81 Kifc2 ENSRNOG00000060123 ENSRNOT00000085152 3 1 1 80 7 117724240 117724367 CTCCACTCTAGATGGCTCTC 59 117724409 117724428 GTCTCATCCCTTGGTACCTC 59 NA Rattus norvegicus 81 Galnt5 ENSRNOG00000004645 ENSRNOT00000006319 3 1 1 80 3 44059662 44061000 CTATCATTCAAGGTCTGGATGTG 59 44061037 44061058 GTCATTTCTGAATATGTGGCCC 60 NA Rattus norvegicus 81 AABR07017895.1 ENSRNOG00000049928 ENSRNOT00000071598 3 1 1 73 15 32324857 32324876 TTACTCCTAGGCCTTCACCT 60 32325049 32325067 ATTTGTTTGACCTGCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Il27 ENSRNOG00000019170 ENSRNOT00000025950 1 1 1 138 1 198006996 198007014 TTCAGGGCTATGTCCACAG 59 198005731 198006812 CAGAGTCTGTCAGAGTCAGAG 59 NA Rattus norvegicus 81 AABR07019870.1 ENSRNOG00000038033 ENSRNOT00000057873 1 1 1 60 13 5480471 5480489 TTCTGTTCTGAGTACCGCC 59 5480511 5480531 CATCACCAATGGATAAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Diras1 ENSRNOG00000029738 ENSRNOT00000046078 3 1 1 61 7 11559348 11559366 TTCGTGACACTTACATCCC 57 11559391 11559409 CTTGTCACAGCTGATCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir199a2 ENSRNOG00000036364 ENSRNOT00000054483 1 1 1 60 13 80125523 80125543 GTTCAGACTACCTGTTCAGGA 59 80125564 80125583 CCAGTCTAACCAATGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr840 ENSRNOG00000030761 ENSRNOT00000052426 2 1 1 60 5 59327332 59327351 ACTTCACCTGTGAGATCCTG 59 59327371 59327392 ATATTGATGGAGATGTCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308139 ENSRNOG00000018550 ENSRNOT00000025553 3 1 1 80 10 59640796 59640816 ATAGTAGGCTAGGTGTTCCCA 60 59640856 59641877 TCCATAAACCACCTGACTTCC 60 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 1 2 2 80 1 197146963 197146982 GTAAGGACATGGTGACAGAC 58 197147022 197154359 GCTTTAATATCCGGTTTCTCTG 57 NA Rattus norvegicus 81 Actl7b ENSRNOG00000016621 ENSRNOT00000022291 1 1 1 60 5 73492779 73492797 TTGGGTCAGCAAAGAAGAG 58 73492737 73492756 TTAGCACTTGCTGTAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688452 ENSRNOG00000039076 ENSRNOT00000014598 1 1 1 81 1 59705220 59705240 CCAAGATACGCAAGTGTAGAG 59 59705278 59706077 CTCCTCTCATCATAGTTGATTTCC 59 NA Rattus norvegicus 81 Chchd2 ENSRNOG00000051180 ENSRNOT00000071817 1 1 1 60 9 101388410 101388428 AAGCAGTTTCTGGAGTGTG 58 101388368 101388386 CATTGAAGCCCTCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk3b ENSRNOG00000023686 ENSRNOT00000037639 3 1 1 83 12 23680678 23680696 AATGACTTCGGCTGTTACC 58 23679099 23680634 CATTACAAGGAACTTCACACTG 58 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 1 3 3 80 19 9772189 9773613 AGTTTGCACTCATCTTCCCT 59 9772128 9772146 AATCAATCCAGCCTTTGCC 59 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000074621 1 1 2 60 6 129425158 129425177 GTGGAAGTGGCTATGTTCTG 59 129425198 129425978 TGAACATTTCAATGCAGGTGG 60 NA DesignRelaxed Rattus norvegicus 81 Rwdd1 ENSRNOG00000042916 ENSRNOT00000068777 2 1 1 80 20 27539109 27539724 CAGAAGAAGCAGAGAAGAAACTG 60 27539051 27539069 CGTCAAATTTGGCCTTCCA 59 NA Rattus norvegicus 81 Igfbp7 ENSRNOG00000002050 ENSRNOT00000002809 2 1 1 99 14 33067484 33067502 AGAACTCTTGCCTGGTGAC 60 33067563 33068159 ACTTAGAGGAGATACCAGCAC 59 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401,ENSRNOT00000088212 2 2 2 94 11 89570213 89570231 TGATGGTACGGTTAGCTGG 59 89570288 89574238 CATAGTTTGTCCTTGGTGGC 59 NA Rattus norvegicus 81 RGD1309534 ENSRNOG00000010887 ENSRNOT00000014496 1 1 1 82 8 13845606 13846537 CTGGCAAGGTCATTGAAGTG 60 13845543 13845561 CTTCTCCAGAGTCTGCCTC 59 NA Rattus norvegicus 81 Rasl11b ENSRNOG00000002097 ENSRNOT00000002869 3 1 1 123 14 36552532 36553686 AAATGCAGGTAACCTCTACAC 58 36551697 36551715 GTTCAACTGCTCATTGCAG 58 NA Rattus norvegicus 81 Htra1 ENSRNOG00000020533 ENSRNOT00000027860 3 1 1 80 1 201542911 201544637 CCGTTAGTAAACCTGGATGG 58 201544680 201544698 GGATGGAATTGCGAAGGAG 59 NA Rattus norvegicus 81 Olr684 ENSRNOG00000030991 ENSRNOT00000042021 3 1 1 60 3 77984974 77984992 GACAGGGCTACAATGTCAC 58 77985016 77985034 TGTCCAGCAGGATCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr222 ENSRNOG00000019581 ENSRNOT00000026487 3 1 1 60 1 171009497 171009515 CTCCCGACTTCATACACCA 59 171009455 171009475 GCAGAGATCATTCAATGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 1 2 2 87 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787712 47789124 GTACAATTTGTGGCCAGCC 60 NA Rattus norvegicus 81 AC125991.2 ENSRNOG00000052402 ENSRNOT00000092205 1 1 1 60 3 78983204 78983222 ATGGACGGGAGGATTTGTG 60 78983162 78983182 GAAGGGCAAAGGAAAGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg6 ENSRNOG00000009045 ENSRNOT00000012052 2 1 1 80 5 118443351 118443369 TTCTTGACAGAAAGGGAGC 57 118443410 118448487 CTGTTTATCCTCAAACAATCCG 58 NA Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000044788,ENSRNOT00000079633 2 2 2 108 1 101512306 101512768 GGTAGAAAGGTGCACTTCTC 58 101512217 101512235 GATCTCGTGCAAACTGCTC 59 NA Rattus norvegicus 81 Vom1r87 ENSRNOG00000058994 ENSRNOT00000084775 3 1 1 60 4 88328518 88328539 AGAACAATCAGATGAAGGTCAC 59 88328559 88328578 CTGATGATGCTGTTCATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000090417 2 1 2 88 1 78818873 78818891 GACCTACGCCAAATGTGAG 59 78818943 78821694 TTGTTGGACATGGCTTGTC 59 NA InUTR Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627,ENSRNOT00000045766,ENSRNOT00000037974 3 3 3 80 9 73399547 73416487 AGAAACAGCAGAGGAAGTG 57 73416530 73416549 TCTTGTTCACCTTTCAGGAC 58 NA Rattus norvegicus 81 Slc35f1 ENSRNOG00000000412 ENSRNOT00000000468 2 1 1 82 20 34391704 34393693 GAATTCAGTTAGCCATCATGGA 59 34401193 34401211 AAAGCCAACATACAGCAGC 59 NA Rattus norvegicus 81 Emc7 ENSRNOG00000005884 ENSRNOT00000008364 2 1 1 80 3 103945625 103949788 TTCCTTAAGACAGATGGGAGC 60 103949825 103949848 GTAAGCTGGAGAAATAACTTCCAC 60 NA Rattus norvegicus 81 Acrv1 ENSRNOG00000008508 ENSRNOT00000011309 3 1 1 81 8 39165047 39165895 TTGGATCTTCCAGAGGAGC 59 39165939 39165958 GAAAGTTGCTGAACAGAAGC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 1 5 9 73 9 81537291 81543845 GGAGTTCAAAGAAGGACGA 57 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078316 1 1 9 60 9 81545332 81545351 CGTAACTGCTCTTTCAGTGG 59 81545373 81545392 GTCAGAAGAAAGCATCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift22 ENSRNOG00000031346 ENSRNOT00000046412 2 1 1 80 12 22807164 22807308 CAAGGTGTGAGGATCCTAGAG 59 22807104 22807122 CCAGAGCTCAAATTCGCAG 59 NA Rattus norvegicus 81 Ift22 ENSRNOG00000031346 ENSRNOT00000046412 3 1 1 81 12 22806603 22807092 TGACTCCAAGTTTGAGTCC 57 22806540 22806560 TGGGATATCAGCATTGAAGAC 58 NA Rattus norvegicus 81 Zfp541 ENSRNOG00000021800 ENSRNOT00000058241 3 1 1 80 1 77986173 77986193 TGAGAATGTAGCTTCTCTGGT 59 77986234 77986553 AGTTCCATCACTCTGTCCTG 59 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 2 2 2 80 13 53165291 53165313 TCTTCTAGTTCTGACTTCACCTC 59 53160492 53161470 TGAAGACCTTCTAATTCCTCCTG 60 NA Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000077580 1 1 3 220 3 147487141 147487159 CACTTCCCTTTCCTCTGGG 60 147478073 147478091 ATACAGGCACAAAGTTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pygm ENSRNOG00000021090 ENSRNOT00000028636 2 1 1 80 1 221760830 221761102 TTTCCCTGATAAGGTGGCC 59 221761145 221761164 TCCACCAGAATCCTCATCAG 59 NA Rattus norvegicus 81 Lin7c ENSRNOG00000045698 ENSRNOT00000073258 1 1 1 80 3 101017450 101018091 ATGGAGTGAGTGTTGAAGGA 59 101018134 101018152 CGACTAACTTCACCTTGCC 59 NA Rattus norvegicus 81 Rpl12 ENSRNOG00000016220 ENSRNOT00000021725 2 1 1 80 3 12009691 12009954 AGATCAAAGTCGTGTACTTGAG 58 12009995 12010013 CCAGAGGACCGATCTTAGG 59 NA Rattus norvegicus 81 Vom1r51 ENSRNOG00000047370 ENSRNOT00000029114 2 1 1 60 1 66873092 66873113 CTACACAAACACAAACAACGAG 59 66873053 66873075 CAGACTTTGAGGATAGGTTATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344,ENSRNOT00000078148 3 2 2 88 2 116403807 116407090 TCATGCAAGGAAACACAGTG 59 116403738 116403756 CATGATAGGTCAGGGTGCT 59 NA Rattus norvegicus 81 Dpyd ENSRNOG00000017105 ENSRNOT00000086125 1 1 1 80 2 222202273 222206140 CTAGTGCTTGATTTCCCTCCA 60 222214924 222214943 TGGGTTTACTTCAGGGAGAC 59 NA Rattus norvegicus 81 Pter ENSRNOG00000017328 ENSRNOT00000023446 3 1 1 81 17 80290336 80290356 TTCCAGATCATCCGAGTACTG 59 80290395 80304579 CAAATATAGACCTGTCAAGGTGG 59 NA Rattus norvegicus 81 Pnn ENSRNOG00000004061 ENSRNOT00000005439 2 1 1 80 6 80160141 80160159 CATCCAAGCCAGATTGCTG 59 80160203 80160543 GAGAATCCACGCCTTAGCA 60 NA Rattus norvegicus 81 Sept1 ENSRNOG00000017804 ENSRNOT00000055012 3 1 1 82 1 198660219 198660775 GTCCTCAAGCAGAAGATCC 58 198660155 198660176 TCTTCATCAGAGTCACATTCTG 58 NA Rattus norvegicus 81 RT1-T24-1 ENSRNOG00000032596 ENSRNOT00000041502 1 1 1 103 20 3281460 3281788 TTTACCCGAACTGACCCTC 59 3281855 3281873 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 RGD1563774 ENSRNOG00000032078 ENSRNOT00000045483 1 1 1 60 5 27180479 27180497 GATACCGACAGTTCACCAC 58 27180437 27180456 TATGCAAACCGCTTCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slbp ENSRNOG00000037162 ENSRNOT00000040229 2 1 1 80 14 82361075 82361462 AATCGTCATCAGGAAGTTCTG 58 82361501 82361522 TCAAGACACTTTCATCTGTCTC 58 NA Rattus norvegicus 81 Pbp-ps ENSRNOG00000052369 ENSRNOT00000084901 3 1 1 60 20 2182567 2182587 TCTTGGTTTATGTGGACTCTG 58 2182527 2182546 AGCCAGACATAACAATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879,ENSRNOT00000083100 3 2 2 80 14 36748241 36748259 ACAGAAACGCTGTGTAGTG 58 36748302 36750699 TACCCTCATCCTCTTCTGAG 58 NA Rattus norvegicus 81 Ttc38 ENSRNOG00000015916 ENSRNOT00000021582 2 1 1 80 7 126720750 126720772 GTGAAAGGGATCTATTCTTTCGG 59 126720812 126722676 AGATAGAGCCTCTTTGGCG 59 NA Rattus norvegicus 81 LOC100362830 ENSRNOG00000027694 ENSRNOT00000011545 3 1 1 60 5 169021938 169021957 TTTGTACCAGTTCCTCAGCT 59 169021897 169021915 ATTCACGAACTAGCCGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 1 1 1 63 4 149880319 149881911 AATGTGATGACAGAAGCCC 58 149881938 149881956 AATCCCAGCTTGAGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617,ENSRNOT00000084760 3 2 2 83 1 281825356 281825376 AGAGAACTCATACAGAACGGT 59 281818529 281818918 GGATGGACTGTTGTAAGCC 58 NA Rattus norvegicus 81 Myo7a ENSRNOG00000013641 ENSRNOT00000019053 2 1 1 80 1 163006072 163006810 AATCGCAGATAAGGTCATCAG 58 163006012 163006033 TTCTTTATCCAGTCTGTCAGGT 59 NA Rattus norvegicus 81 AABR07061254.1 ENSRNOG00000038024 ENSRNOT00000057854 2 1 1 60 4 112357327 112357345 GAGAAGTCAGGATGGTTGC 58 112357285 112357305 CCTTTGTATTCCAACCTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687097 ENSRNOG00000043313 ENSRNOT00000066512 1 1 1 60 1 230297979 230298000 TCCTTAGTAATCTGTCCTTGGT 58 230297940 230297958 ATGACCTTTGGAGTGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687097 ENSRNOG00000043313 ENSRNOT00000066512 3 1 1 60 1 230298139 230298159 TGAGTGATTTCATTCTCCTCG 58 230298099 230298120 ATGAAGAGAAGAACTTGAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne6 ENSRNOG00000018399 ENSRNOT00000024978 3 1 1 80 15 34192391 34192909 ATCCTGAATGTGAAGAGATCTC 58 34192950 34192968 TGGTAGGACCATAGAGCTG 58 NA Rattus norvegicus 81 Rps29 ENSRNOG00000004196 ENSRNOT00000005577 3 1 1 86 6 91456339 91456358 GTCTGATCCGTAAATACGGG 58 91455442 91456293 CTTAGTCCAACTTAATGAAGCC 57 NA Rattus norvegicus 81 Fam209a ENSRNOG00000005235 ENSRNOT00000006949 1 1 1 95 3 170476119 170477183 AGAACAAGGAGCAGAATCC 57 170477242 170477260 AAGTGAAGTCTTTGCTGGG 58 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 1 2 2 80 4 162399100 162400132 ATAACAAATTGCTTCCCATCCG 60 162400172 162400191 TGTAGTCTCTGCTACTGCTG 59 NA Rattus norvegicus 81 Npap60 ENSRNOG00000024560 ENSRNOT00000039549 3 1 1 121 4 128264557 128264814 TAGTGCAGGACACTAAGTTAGAC 60 128264458 128264476 ATCAAGTGGTGGATTGGGT 59 NA Rattus norvegicus 81 Fam167b ENSRNOG00000049425 ENSRNOT00000074172 2 1 1 123 5 147783888 147783906 CATGGATTCAGCGCTTGAG 59 147783027 147783046 GACTTGGTCCACTTTCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC691215 ENSRNOG00000028189 ENSRNOT00000029193 1 1 1 80 X 125315025 125315936 TCAGACGTAAGGGCAATCAG 60 125315976 125315997 TTTCACTAACTCATCTCCAGCA 60 NA Rattus norvegicus 81 Gareml ENSRNOG00000048004 ENSRNOT00000074348 1 1 1 89 6 27635403 27635421 TACTTCAGCAGTGTGGAGG 59 27634826 27635350 TGACACCACCTTGACACTG 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656,ENSRNOT00000080829 2 2 2 80 6 126466441 126469821 CTCATGAGATGGCCATTGTG 59 126466380 126466399 GGTTGATGAAGTTCTGGACC 59 NA Rattus norvegicus 81 Txk ENSRNOG00000025925 ENSRNOT00000035623 3 1 1 80 14 38046366 38046390 CAGAGGAATATCTGATATTGGAGAG 58 38046427 38048870 GGATTAAGCCTTCATTCCCG 59 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 3 2 2 80 9 81826096 81826115 GAAAGAAAGCGACCATTCCT 59 81826157 81831129 CGTAGCAATCTGCCATTCTC 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 1 3 3 81 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230021 198230507 CCTTATCTACCTTAATGCCCAC 58 NA Rattus norvegicus 81 Stard3 ENSRNOG00000042044 ENSRNOT00000064190 2 1 1 80 10 86332988 86333121 CATCTTGAAGACCTTCCTGC 59 86333162 86333182 CATAGTACCATCCTCTCAGGC 60 NA Rattus norvegicus 81 AABR07053304.1 ENSRNOG00000050529 ENSRNOT00000042764 3 1 1 68 3 98695664 98695682 TAGCTTCCACCAGCTTAGC 60 98695714 98695732 GTACCACTGTTGCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1606 ENSRNOG00000006734 ENSRNOT00000008798 3 1 1 60 15 12261230 12261250 TTCTACACTATCCTCACACCC 59 12261190 12261208 CATCCTTGTTCCTCATGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 1 5 5 80 10 70163836 70163854 GAAGTGGGAGCTGATGGAG 60 70162262 70163794 TCTTCATTACCAGACACCAGG 60 NA Rattus norvegicus 81 LOC499823 ENSRNOG00000029652 ENSRNOT00000046112 2 1 1 80 3 71445890 71445908 CTGGTTCCTGTGTCCTGAG 60 71445952 71447838 ACCATTGGACTGAGAGCAG 59 NA Rattus norvegicus 81 Cog8 ENSRNOG00000020379 ENSRNOT00000066312 3 1 1 81 19 39249688 39249709 ACCTTGTTCCTTATTTGAACCG 59 39247107 39249648 GTGGGTGAAATGCCTAAAGTC 60 NA Rattus norvegicus 81 Gpm6a ENSRNOG00000010731 ENSRNOT00000014312 1 1 1 81 16 39375816 39382176 GCGCTTGGTTTATCATGCT 59 39375753 39375771 ATGTACACTGGCAGTGAGG 59 NA Rattus norvegicus 81 Rn60_X_0773.3 ENSRNOG00000027972 ENSRNOT00000033532 1 1 1 60 X 77259035 77259053 AAAGACCAAAGAAGCACGA 58 77258993 77259011 GATCTCCTCCTTCTTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpc1 ENSRNOG00000049437 ENSRNOT00000074395 1 1 1 80 9 100023102 100023120 CAGTGTGCATATGTGGCTG 59 100023164 100023306 CCCTGGATGACCTTAGCTG 60 NA Rattus norvegicus 81 LOC688776 ENSRNOG00000029859 ENSRNOT00000049703 2 1 1 60 13 69172221 69172241 GAGAAGAAGGCGTATGTTCAC 59 69172181 69172201 TCTTGTTGGCAACATCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmnb2 ENSRNOG00000025742 ENSRNOT00000022336 3 1 1 81 7 11661191 11668566 TTACCACTCGTGAGGTGAG 59 11668611 11668629 GCTGTCTCATCCAGTACCC 60 NA Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000066382 2 1 2 80 14 33541216 33541918 GCAAAGGCTCTTAGTAAACAC 58 33541156 33541175 AGGAGAATTCTCAAGAGCCT 58 NA Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000066382 3 1 2 80 14 33541958 33541978 AAAGATATTCACACGCTAGCC 59 33541216 33541919 GTGTTTACTAAGAGCCTTTGCT 59 NA Rattus norvegicus 81 Tas2r144 ENSRNOG00000028130 ENSRNOT00000037194 1 1 1 60 4 71589272 71589295 CTGTGTTTCTGAACTACTGTAACC 60 71589311 71589332 AGACAATAGAAGACATTGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk16 ENSRNOG00000006422 ENSRNOT00000008461 2 1 1 85 15 4478842 4479302 TACCATAGGTTATGGAAACCTGG 60 4479347 4479365 TGAGTGGGATTCCCATCAG 59 NA Rattus norvegicus 81 Ahi1 ENSRNOG00000013969 ENSRNOT00000019076 2 1 1 80 1 16487209 16487228 GTCCAAGGAATCGTTACCCA 60 16487270 16488597 GGTACGATGGCTTTATGCAG 59 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989,ENSRNOT00000071215 1 2 2 134 3 172424588 172424609 CATGTTAATGGGTTTAACGGAG 58 172433194 172433307 CACAATGGTTTCAATGGCC 58 NA Rattus norvegicus 81 Thnsl1 ENSRNOG00000033076 ENSRNOT00000045984 1 1 1 80 17 88099327 88099920 GACTTACTTGGCTAAAGCCAG 59 88099960 88099980 ATGGTGACATCTGGTAAAGCT 60 NA InUTR Rattus norvegicus 81 AC117012.1 ENSRNOG00000056683 ENSRNOT00000088803 1 1 1 60 3 76862594 76862615 CTACAATGAATGTATGACGCAG 58 76862636 76862654 AAAGATCTCCATGCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561212 ENSRNOG00000024283 ENSRNOT00000043949 3 1 1 83 5 120877526 120878423 AAAGAGTTGTCCAGATGCC 58 120877461 120877482 GTGTTTCAAGTCTGACATTGAG 58 NA Rattus norvegicus 81 Nin ENSRNOG00000005540 ENSRNOT00000007529 1 1 1 80 6 92470901 92470919 CTAATGGCTTCTGAGGTGG 58 92470575 92470859 TTCTTCATCCAGTTTCCTGAG 58 NA Rattus norvegicus 81 Zc3h11a ENSRNOG00000053210 ENSRNOT00000090858 1 1 1 80 13 50229302 50230023 GAGATCAGGTACAAGAGAAGAG 58 50230063 50230082 ATCTTAGTCACACTGCTCTG 57 NA Rattus norvegicus 81 Olr454 ENSRNOG00000056255 ENSRNOT00000090772 2 1 1 60 3 73115074 73115092 AGGTGACAGAGTTCATCCT 58 73115113 73115134 AAGAGTACCTGCTGTAATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddah1 ENSRNOG00000014613 ENSRNOT00000045016 1 1 1 80 2 251724255 251729897 ACGTCCTATTCACAGGCAG 60 251729940 251729959 TATCAGCCAAGATCTCAGCA 59 NA Rattus norvegicus 81 Olr155 ENSRNOG00000017234 ENSRNOT00000023147 1 1 1 60 1 169590328 169590349 CCACCCTTCTTTCTTCATTCTC 59 169590367 169590388 GATCCATCTGTGTTTGTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbscr16 ENSRNOG00000001483 ENSRNOT00000002032 3 1 1 80 12 25562384 25565874 GCTGGACCATAAGATTTCCT 57 25565916 25565935 ACTTTCGTAACATCCTTGGT 57 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 3 2 2 80 4 88862990 88864465 GATTCCAAGGTTGGAACTCAG 59 88864506 88864525 GATGAGCTCCATTCCTATGC 58 NA Rattus norvegicus 81 Lgr4 ENSRNOG00000005715 ENSRNOT00000007681 1 1 1 80 3 101104030 101122316 TCTAGAGGAGCTACAACTGG 58 101122358 101122377 ACTTTGAGTTCTTTCAGCCC 58 NA Rattus norvegicus 81 LOC100910429 ENSRNOG00000004588 ENSRNOT00000006050 1 1 1 80 7 129749874 129781991 AGGGCATAGGTAATACAGAAGG 59 129782031 129782050 AGCAGACTTCTTCCTCTTCC 59 NA InUTR Rattus norvegicus 81 Mir490 ENSRNOG00000036272 ENSRNOT00000054395 1 1 1 60 4 63342945 63342965 GAAAGTTCATTGTTCGACACC 58 63342984 63343005 GGTTGGTGTATATCTAAACGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppfia4 ENSRNOG00000003494 ENSRNOT00000039540 3 1 1 80 13 51143038 51143576 CAGCATGAGATCAAGGATGTG 59 51142978 51142999 ATAATCCCTTAGCCCTATGGAC 59 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 1 2 2 80 6 28337055 28338244 GGCAGAATAGCCAAGTTCAG 59 28338287 28338305 GAAATGCTGGTCTTTGCCC 60 NA Rattus norvegicus 81 AABR07027447.1 ENSRNOG00000047534 ENSRNOT00000071312 2 1 1 60 17 31706475 31706493 AATCCTGTCCCTTCTGGAG 58 31706433 31706454 GTAGCAGACTCTTACTAGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017745.4 ENSRNOG00000061290 ENSRNOT00000072978 1 1 1 91 15 30557610 30606117 CTAATGCTCAGGAGGAGCA 59 30606172 30606190 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Apobec1 ENSRNOG00000015411 ENSRNOT00000020735 3 1 1 86 4 155390059 155398192 CACTCTGAGGAGAAGAATTGAG 58 155389994 155390013 TCATACAGCAGACAGGTCTC 59 NA Rattus norvegicus 81 Vom2r43 ENSRNOG00000013563 ENSRNOT00000052226 2 1 1 80 1 149512810 149513215 ACTCCAGAGCTTTACTATGGG 59 149512750 149512773 GATAGCCATCTGATACAGATAAGG 58 NA Rattus norvegicus 81 Lrrc10b ENSRNOG00000030180 ENSRNOT00000050716 1 1 1 60 1 226501764 226501782 CAGAAGCTGTATGTGAGCG 59 226501722 226501740 GCAGCTCCTCTATCTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 2 2 4 80 9 111210939 111210957 GAACCCTCACTCTAGTGGA 58 111208981 111210895 GCTGACAAGCATATACCCA 57 NA Rattus norvegicus 81 Chst3 ENSRNOG00000000572 ENSRNOT00000000697 3 1 1 90 20 29737142 29738279 ATCATATCCAGGGTCTCCGA 60 29737071 29737089 TTTCCGATAAGAGCAGGGC 60 NA Rattus norvegicus 81 Chrd ENSRNOG00000001750 ENSRNOT00000002394 2 1 1 80 11 83864469 83864487 CTAGAGAAGATGGGTGGGC 59 83864263 83864426 GACGCTTTGAAGGACATCAC 60 NA Rattus norvegicus 81 Vom2r9 ENSRNOG00000013671 ENSRNOT00000029537 1 1 1 80 1 55865375 55867286 TTTACACAGATTCCTCAGTCTG 58 55865316 55865335 TACAGCCCTACCTTTCTGAG 59 NA Rattus norvegicus 81 AABR07051533.2 ENSRNOG00000043155 ENSRNOT00000048523 1 1 1 60 3 16537370 16537389 GGTCTTCATATTCCTGCTGC 59 16537153 16537171 CTGGGTCATCACAGTTTCC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07051533.2 ENSRNOG00000043155 ENSRNOT00000048523 3 1 1 60 3 16537371 16537390 GGGTCTTCATATTCCTGCTG 58 16537154 16537172 TGGGTCATCACAGTTTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Etnppl ENSRNOG00000045743 ENSRNOT00000074209 1 1 1 80 2 235744303 235747889 CTCTTGAGCATGCTTACCAC 59 235747932 235747950 TGACATCTTTGCCCTCCTG 60 NA Rattus norvegicus 81 LOC100910500 ENSRNOG00000046648 ENSRNOT00000075355 2 1 1 60 15 35889858 35889876 TCATGTACCTTCAGCCCTC 59 35889900 35889918 AACACAGACGACACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbds ENSRNOG00000000888 ENSRNOT00000001190 2 1 1 80 12 29922641 29925404 TCTGCAAGCAGATTCTGAC 58 29925448 29925466 CCCTAAACATCTGCTCCAG 58 NA Rattus norvegicus 81 Cyp2g1 ENSRNOG00000020827 ENSRNOT00000028261 1 1 1 80 1 83626804 83627419 CAGTCCTTTCTGAAGCTCCA 60 83627460 83627480 ACATAAGATAACCACTGGCCT 59 NA Rattus norvegicus 81 Capn10 ENSRNOG00000045623 ENSRNOT00000074160 2 1 1 80 9 100111900 100112106 ACCAGAATAGACAGACAGTCC 59 100112398 100112416 CATCACTGCCATGAAGGAG 58 NA Rattus norvegicus 81 Hip1 ENSRNOG00000001448 ENSRNOT00000030497 3 1 1 80 12 24292942 24292960 AGAGGAAGAGTTCTCAGCC 58 24293004 24293759 TGACACATGGAATCCTGGG 59 NA Rattus norvegicus 81 Galnt14 ENSRNOG00000007951 ENSRNOT00000010613 2 1 1 80 6 24781376 24781857 CTACCCAGAACTCAGGGTC 59 24781314 24781333 TGAGACTCAAGGCACTTCTG 60 NA Rattus norvegicus 81 Gas2l3 ENSRNOG00000025198 ENSRNOT00000033123 1 1 1 80 7 29972646 29972664 CCTCAGGGCTTGAAGAGTC 60 29967793 29972602 CGATGTGCTTAACAGCCTC 59 NA Rattus norvegicus 81 Btg2 ENSRNOG00000003300 ENSRNOT00000004408 1 1 1 81 13 50915484 50916746 ACTGACCGATCATTACAAACAC 59 50915424 50915442 GTGGTTGATGCGGATACAG 59 NA Rattus norvegicus 81 Olr281 ENSRNOG00000049832 ENSRNOT00000040345 1 1 1 60 1 173468789 173468809 GAATCCACTAATCTACAGCCT 57 173468749 173468768 CCATAATTTCAACACAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 4931400O07Rik ENSRNOG00000026227 ENSRNOT00000032522 2 1 1 91 X 145558940 145558959 CGAATAAGGGAGGACGAGAC 60 145559007 145559200 CACTTTCCAGACCTTCTTATTTCTC 60 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000072791 3 1 3 86 9 111279611 111280814 TGAAATGTCATCTGTGGCCT 60 111280863 111280881 GGGAGGATCTTCGTAGGTG 59 NA Rattus norvegicus 81 Sardh ENSRNOG00000006916 ENSRNOT00000009555 1 1 1 80 3 5777965 5777984 TGTGTTTCAAGAACGACAGG 59 5775815 5777925 TAGTCGTAGTCTAGGACCTGAG 60 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356,ENSRNOT00000090808,ENSRNOT00000008972 1 3 3 80 4 56649256 56649276 ATCCTCCCTTCAGACTATGAC 59 56649318 56650841 CTTGCCATCCTTGTCTTGG 59 NA Rattus norvegicus 81 AABR07017892.1 ENSRNOG00000048543 ENSRNOT00000072496 2 1 1 93 15 32296159 32296323 TCCTAATGCTCCGAAGGAG 59 32296380 32296398 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 2 2 2 80 12 25227391 25227409 CAAGAGGGACAAAGAGGTG 58 25227453 25229567 CACTTGTTCTCGAGAGCAC 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478,ENSRNOT00000004966 3 2 2 82 10 108644747 108644765 GCTCTCGAGAGTACATCCG 60 108644811 108646156 CTTCTCCTTCTGGCTCCTG 60 NA Rattus norvegicus 81 Neurog1 ENSRNOG00000022405 ENSRNOT00000015916 2 1 1 68 17 9155536 9155554 AAGACTTCACCTATGGCCC 59 9155586 9155604 TATGGAGGAGGTCTTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf7 ENSRNOG00000046121 ENSRNOT00000073646 2 1 1 80 10 104851956 104852651 CACTGCTCAAATTCCAGAGG 59 104851501 104851520 TAGCTAGACGGGAAGAAAGG 59 NA Rattus norvegicus 81 Marveld1 ENSRNOG00000042620 ENSRNOT00000064160 2 1 1 88 1 261391394 261392575 CCTCTAAGGTTTCCATGTTGC 59 261392625 261392643 CAGTTCAGCCAATCAGGGA 60 NA InUTR Rattus norvegicus 81 Ddx3y ENSRNOG00000002501 ENSRNOT00000003378 1 1 1 60 13 105409884 105409902 CATTTCTGCTTGACCTCCT 57 105409925 105409944 TCCACGAACACCAATATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 2 2 2 80 20 30708891 30708910 AGAAAGCATCCTAATGGCCT 59 30707556 30708848 GGAGCCACAATTTCTGGAG 59 NA Rattus norvegicus 81 Otor ENSRNOG00000028721 ENSRNOT00000034252 2 1 1 80 3 137154155 137154173 GGCATGGCATGTTTATGGA 59 137154214 137154541 TTGCCAGAGAAATGGTATAGAC 58 NA Rattus norvegicus 81 Ythdf2 ENSRNOG00000010892 ENSRNOT00000014479 2 1 1 165 5 150389973 150389992 GTTACCAGTGAGGATCCGAG 60 150383805 150388801 ATGCATTATTCGGCCTTGC 59 NA InUTR Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 3 2 2 80 18 3210271 3212221 TGTGATAGATACAAAGGACAGC 58 3212260 3212280 GTTTCACTGACCAATGTACAG 57 NA Rattus norvegicus 81 Scand1 ENSRNOG00000019987 ENSRNOT00000027076 2 1 1 89 3 152382377 152382395 CTTCACGTGACTTGTAGGG 58 152382207 152382324 CCTTCTGCGTCTCTAACAG 58 NA InUTR Rattus norvegicus 81 Nhlrc1 ENSRNOG00000026286 ENSRNOT00000031656 3 1 1 60 17 18060450 18060468 GTTACTCATGGCCTTTCCC 58 18060489 18060510 CAAGAAGAGAATTCTCCTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr479 ENSRNOG00000049794 ENSRNOT00000012872 2 1 1 60 3 73456218 73456237 GTACTTGCTGTCAGTCATGG 59 73456177 73456195 ATAGAGGAGAGGGTTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 3 2 2 80 7 130143807 130143828 ACCTGTTGAAGTTTGAAGAGAC 59 130143430 130143766 CATCGTGGGATAGCTTTGG 58 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000047903 ENSRNOT00000043386 1 1 1 80 9 105348667 105356459 AAAGCAGTTGGACATGTTCAG 60 105348607 105348625 TGCAAATACAGCAACAGCA 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000047903 ENSRNOT00000043386 2 1 1 80 9 105374896 105376491 GGCTCATGGTATGATATTTGGT 58 105374837 105374857 GTCTCTAACTTTGACGGAGAC 58 NA Rattus norvegicus 81 Maneal ENSRNOG00000025349 ENSRNOT00000038055 1 1 1 92 5 142855292 142855310 TACCTGCCATTCTGGACTC 59 142853119 142854132 CATTGACACAAGATGGTTGTG 58 NA Rattus norvegicus 81 RGD1560017 ENSRNOG00000029262 ENSRNOT00000049695 3 1 1 60 3 94833052 94833071 AGTCATTGAACACATCCAGG 58 94833011 94833029 AGCTCTGTAGGTTCGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046434 ENSRNOT00000073188 2 1 1 87 17 43814939 43814957 CTCAGGACTTCAAGACCGA 59 43814870 43814888 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000077440 2 1 2 75 7 98709085 98709103 CTTGCTCAAAGAGCTGCAC 60 98607055 98607074 TTGGGTGAAGTTCATGAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Sf3b3 ENSRNOG00000017724 ENSRNOT00000023854 1 1 1 80 19 43397572 43398783 GGCAACTTCCTTATTACAGTTCC 60 43398817 43398841 GTAGGTGATATAATTCTCAGAGCAG 59 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 2 2 2 80 4 57038555 57039560 GACTATGTGCTATGCCAAGC 59 57039599 57039621 CCGATTCTTGATCTCACAATCAG 60 NA Rattus norvegicus 81 AABR07054264.1 ENSRNOG00000050337 ENSRNOT00000075257 2 1 1 80 3 145764992 145765012 GATCCTTCCCAGAAGAGTCTC 59 145765053 145765399 TTCCCAATTGTTGCCTACAG 59 NA Rattus norvegicus 81 Scn4b ENSRNOG00000026679 ENSRNOT00000030152 3 1 1 82 8 49449141 49449159 CTTCTCCAGCTGTTATGGC 58 49449205 49449759 CGTCGATGAGAATCCTGGA 59 NA Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 2 2 2 92 5 127165229 127213365 AACAAGTGCATGTTCGAAGG 60 127213420 127213438 GTATGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 2 3 7 162 15 34668519 34668862 CAGCTCAGTGTAATGGAAGC 59 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 LOC100360124 ENSRNOG00000039782 ENSRNOT00000061040 1 1 1 60 15 5784061 5784081 CAGAAAGACCCAAGAAATCCT 58 5784102 5784121 CACAGATTCCAGAAGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296,ENSRNOT00000082105 3 2 2 80 6 64281549 64281569 AATACCACAACATACACGAGC 59 64281607 64284504 TATGTGGACTTCCTCTGTATCTG 59 NA Rattus norvegicus 81 Snrpd1 ENSRNOG00000013714 ENSRNOT00000018646 3 1 1 84 18 1868789 1872129 CAATCACAGGTGTAGATGTCAG 59 1872174 1872192 TCCAACTGTACAGGCTCTC 59 NA Rattus norvegicus 81 Slc26a6 ENSRNOG00000020450 ENSRNOT00000027762 3 1 1 82 8 117654153 117654252 AGTGGACCTGCTAATCTGG 59 117654298 117654316 AGACTATGGAGACTGCCAG 58 NA Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 2 2 2 80 X 134777158 134777179 AGCTTAATGACACCCAATACTG 59 134777219 134777480 CTATTGTCTCGTTTGGCTCC 59 NA Rattus norvegicus 81 A2ml1 ENSRNOG00000007247 ENSRNOT00000009557 2 1 1 80 4 161902609 161904436 TTGATCACCGTTCAGAATCC 58 161902548 161902566 GAGCTGGGTGATGTTTCTG 59 NA Rattus norvegicus 81 Thap2 ENSRNOG00000003993 ENSRNOT00000005443 2 1 1 90 7 58357905 58357924 AACAGGACAAACTCGAAGAC 58 58354954 58355575 CCTTGACTTGAGTTTCAAGC 57 NA Rattus norvegicus 81 Olr1609 ENSRNOG00000012526 ENSRNOT00000016702 3 1 1 60 15 27032347 27032367 AATTCTGTTCACTGTCCTGTC 58 27032307 27032326 GCTGAGAAGGAAGAACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acadsb ENSRNOG00000020624 ENSRNOT00000027999 3 1 1 80 1 202017096 202019355 TATTATGCATCAGAGGTCGCT 59 202019395 202019415 GTAATCTTTGGTGTAGCCGAC 59 NA Rattus norvegicus 81 LOC686209 ENSRNOG00000047452 ENSRNOT00000074907 1 1 1 60 5 137776657 137776675 TTTCTGCCTTCCTTAACCC 57 137776699 137776717 AAAGCCCTCTTCACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd81 ENSRNOG00000020451 ENSRNOT00000027760 2 1 1 80 1 216252300 216252712 CTCAGCTTCTGAAGGAAGAC 58 216252755 216252773 TGGCTGCAATTCCAATGAG 59 NA Rattus norvegicus 81 Psph ENSRNOG00000000925 ENSRNOT00000001228 2 1 1 80 12 30520621 30520640 CAGTCATCAGAGAAGAGGGA 58 30520682 30521458 CTCTCCGTGTCATTTCAGAC 58 NA Rattus norvegicus 81 Mir497 ENSRNOG00000036260 ENSRNOT00000054383 1 1 1 60 10 56844983 56845001 GCACACTGTGGTTTGTACG 60 56845025 56845043 TCGCTCTAACACCACAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm9 ENSRNOG00000021493 ENSRNOT00000066370 1 1 1 80 1 57546963 57546982 ATCACCAAGGGAAGAAACTG 58 57545786 57546921 ACAGTTCACATACCTCATCC 57 NA Rattus norvegicus 81 Galnt15 ENSRNOG00000019718 ENSRNOT00000065618 3 1 1 80 16 8174617 8174636 GTGATTCTGCAGAACTGCAC 60 8174677 8177712 GATGATCAGTCCATCCTCCTG 60 NA Rattus norvegicus 81 Fndc8 ENSRNOG00000008264 ENSRNOT00000010924 1 1 1 80 10 70248887 70248906 CACGAGTTACTGTCTCACTG 58 70248948 70249479 ACGGTTGCAAACTTATAGGG 58 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058,ENSRNOT00000086447 3 2 2 80 3 1542953 1542972 GACACCTTCCAATACACCTC 58 1542411 1542911 TAGGGTGAATGAGGATCTGC 59 NA Rattus norvegicus 81 Fam13a ENSRNOG00000007947 ENSRNOT00000010898 1 1 1 80 4 89262791 89262813 CCTTTATCACCTTTCTACCTGAG 58 89235511 89238409 GGTTCTTTCTAAGAGTTCTCCA 58 NA Rattus norvegicus 81 AABR07051532.1 ENSRNOG00000049009 ENSRNOT00000047784 2 1 1 60 3 16440998 16441016 ACTTCTGCTATGGGTGCTG 60 16440724 16440743 GGTCAAGACAATGTCACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107,ENSRNOT00000091578 2 2 2 81 2 198990952 198990972 GGTAGTAGTGATCAAGAAGGG 57 198991013 198992382 CCTTGATGATTTGACCTTTCTG 58 NA Rattus norvegicus 81 Itih1 ENSRNOG00000033386 ENSRNOT00000051751 1 1 1 80 16 7020896 7020914 CCAACATGAGCAAGAACCT 58 7020242 7020852 CCTCCTTTGTCTGCTTCAC 59 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454,ENSRNOT00000086335 3 2 2 80 18 6026837 6026856 TATAGACCAACACAGCCAGG 59 6021921 6026799 GTAATTTCCATATTGTCCCTGGTC 60 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512,ENSRNOT00000087592 1 3 3 80 9 119105430 119110050 TCTATTGGGATACAGGTGGA 57 119110093 119110111 CACGGACTGGAACTTACTG 58 NA Rattus norvegicus 81 Ociad2 ENSRNOG00000002196 ENSRNOT00000002991 1 1 1 80 14 37443843 37444651 CTAAAGTTGCACTGGCTGG 59 37444692 37444713 AATGGAATTTACTCTGGCACAC 59 NA Rattus norvegicus 81 Tpd52l2 ENSRNOG00000015122 ENSRNOT00000020373 2 1 1 80 3 177000996 177004522 GAGATATGAGCAGCTACTCCA 59 177005756 177005777 CTTCAAATGACTTGAAGGTTGC 59 NA Rattus norvegicus 81 Polg2 ENSRNOG00000013728 ENSRNOT00000018394 1 1 1 80 10 94972365 94972385 CTTACCTCTACGATTCCTTCC 57 94972185 94972326 GAAGTTTAAGCACCTTTCTCTG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000085670,ENSRNOT00000083535 2 3 3 80 2 250774777 250774801 GGGAGTGTTTGATGAGTATAATGAG 60 250771645 250774741 GTAGAACACCTTGTCACTTCG 59 NA Rattus norvegicus 81 Shisa4 ENSRNOG00000007369 ENSRNOT00000009712 2 1 1 89 13 52194318 52194336 CATGTACCCACCTAGTGGT 58 52194020 52194265 ATATAGGGTGGAGGAGCTG 58 NA Rattus norvegicus 81 Nudt13 ENSRNOG00000048195 ENSRNOT00000070933 3 1 1 103 15 4443201 4443220 GAAGATTCAGTGCTGGTTGG 59 4441818 4443135 GATTTCGGCAAAGAGGCTC 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 1 2 2 84 12 29935042 29936721 CATTGTCCCAGATGACGAC 58 29934976 29934995 CATCGTTATCACCATCACGA 58 NA Rattus norvegicus 81 Nudcd1 ENSRNOG00000024929 ENSRNOT00000006685 1 1 1 80 7 83304102 83307999 CTTCAATGCTCTAGGTTATGTG 57 83304043 83304062 GCTGCGTATGAGTAATTTGG 57 NA Rattus norvegicus 81 Vom1r19 ENSRNOG00000032996 ENSRNOT00000042702 3 1 1 60 1 61095812 61095830 ACAGCATATACACGCAACC 58 61095853 61095872 TTTGGTAGCTTGATCCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502618 ENSRNOG00000039210 ENSRNOT00000060011 3 1 1 81 3 14595095 14598797 GTGGGAAGCTACATTTGGT 58 14595032 14595050 TGATGACCTTCTGGTTGAC 57 NA Rattus norvegicus 81 Cdk19 ENSRNOG00000000583 ENSRNOT00000000713 3 1 1 80 20 45592105 45592740 CCCTGCCAACATTAGATGTG 59 45592780 45592801 CTTCCGGTTCATCTTCATTGAG 60 NA Rattus norvegicus 81 Arcn1 ENSRNOG00000061108 ENSRNOT00000082687 1 1 1 80 8 49053143 49055258 CTGCAACATACAGGTTACCA 58 49053082 49053102 ACTAAGAAAGTGGTCTCTGTG 57 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 3 1 1 91 1 276012166 276012184 AAACAGCTCCTCCGATTCC 60 276011622 276011871 CCGCTTCTTCCAAACTTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 3 1 1 94 1 274649633 274650324 AAACAAGGGCAGTTGTCTG 59 274649557 274649576 TCCAGTCTTTCCAAAGTCAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07032888.1 ENSRNOG00000046679 ENSRNOT00000072475 1 1 1 60 18 87415727 87415745 GACAAACATGGAGCGACTG 59 87415766 87415787 GCATAGGGTATAATGAGAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032888.1 ENSRNOG00000046679 ENSRNOT00000072475 2 1 1 60 18 87415587 87415606 AAATGTCACACTCAGTTGCC 59 87415627 87415647 TTCCCATATGACTAGTTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp866 ENSRNOG00000042580 ENSRNOT00000034415 2 1 1 80 16 21422047 21422065 GATCCTTCCCAGAGGAGTC 59 21422108 21422334 TTCCCATCTGCTTCCTACAG 59 NA Rattus norvegicus 81 Polr2g ENSRNOG00000019439 ENSRNOT00000026313 1 1 1 80 1 224994366 224994384 GTCCCAACTTGCTCAACAC 59 224993699 224994324 TCACAAAGCCATATTTCCCAG 59 NA Rattus norvegicus 81 Frk ENSRNOG00000000543 ENSRNOT00000000653 3 1 1 80 20 41344899 41346741 CATGCTTAAAGATTCAGGTACCG 60 41346781 41346799 TGGAGTTGCGGTCTATCTC 59 NA Rattus norvegicus 81 Zfp668 ENSRNOG00000016683 ENSRNOT00000022452 3 1 1 110 1 199314275 199320359 GGAAGCATGCAAAGAAGGT 59 199314183 199314201 AACAGGCACTTATAACGGC 58 NA InUTR Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 3 2 2 80 12 25060980 25062073 TTCCTCAAGGAGGTGAAGG 59 25062117 25062135 CTTGTCCTTGTACAGCACG 59 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466,ENSRNOT00000015420,ENSRNOT00000088049 3 3 3 98 5 127660361 127660380 CTTCAAAGTGAAGGATGGCC 59 127651617 127660302 GCCTTCTTATCTGAATCCGGA 60 NA Rattus norvegicus 81 Fmo5 ENSRNOG00000018076 ENSRNOT00000024423 2 1 1 80 2 199807151 199807170 CATTGTCATTGGCATTGGGA 59 199807213 199811554 GTACTGAGGAACACCTGCT 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 3 1 2 174 9 105944389 105944527 TATGATGATTGGGACCACAGG 60 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000075578 3 1 2 125 9 105944864 105946151 TCTCGCTATCTGCATCAGG 59 105946240 105946258 GAGGATGCTGGGAGTTCAG 60 NA Rattus norvegicus 81 Olr737 ENSRNOG00000052463 ENSRNOT00000088256 2 1 1 60 3 79050358 79050377 GTGGTTGTCTTGTTCTTCGG 60 79050317 79050336 TGTAAGTGGAAGCAGGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306091 ENSRNOG00000019931 ENSRNOT00000026986 2 1 1 80 19 58773876 58773895 CTCTCCATGAAGTGTTTGCT 58 58773938 58773957 GATCGTTGTACCACAGGAG 58 NA Rattus norvegicus 81 RGD1562063 ENSRNOG00000033520 ENSRNOT00000049198 3 1 1 80 7 117426720 117426739 AAATGTGGTTGCAAGCAGAG 60 117426780 117426882 TTCCAGAGGACTTGAATTTGC 59 NA Rattus norvegicus 81 Mcmbp ENSRNOG00000020394 ENSRNOT00000027644 1 1 1 80 1 200124285 200127311 GTTCCAGCATCTTTCCGTC 59 200124223 200124242 GGCTGTATAGTCTTTGTGGG 58 NA Rattus norvegicus 81 Tex22 ENSRNOG00000028158 ENSRNOT00000034995 3 1 1 89 6 137889618 137890021 GAGCTCAGCCCTAGATGTG 60 137890074 137890092 CCACTGTAGCGTCTTCCTC 60 NA InUTR Rattus norvegicus 81 Tmem127 ENSRNOG00000022727 ENSRNOT00000031577 2 1 1 86 3 119685815 119685833 CTGTTGGATGTCTTTGGGC 59 119685883 119686637 ACACTGTAGGACAGTGAGG 58 NA Rattus norvegicus 81 Celsr1 ENSRNOG00000021285 ENSRNOT00000036025 1 1 1 80 7 126813257 126817500 TGAACAAGCTATGCCACAC 59 126813195 126813214 ACAGAGATGGTGATGTCGAG 59 NA Rattus norvegicus 81 Kcnk9 ENSRNOG00000009265 ENSRNOT00000012408 1 1 1 80 7 113904657 113937388 GTCATCACAACTATCGGATATGG 59 113904599 113904620 CAGCACAGCATAGAACATACAG 60 NA Rattus norvegicus 81 Rbm20 ENSRNOG00000014705 ENSRNOT00000054685 2 1 1 80 1 274580859 274580877 CTGTTCTACACAAGCGAGG 58 274580918 274586758 CAGGTACTTCTGTAAGTTCCTG 58 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420,ENSRNOT00000072073 3 2 2 80 1 261170946 261170965 CACAGTCCAATTACCTGCTG 59 261170324 261170903 CCATCTGGACACCTGACTC 60 NA Rattus norvegicus 81 Rn60_X_0744.1 ENSRNOG00000048213 ENSRNOT00000076109 3 1 1 60 X 73581610 73581628 GCTCCTACATGTTGGTGGA 59 73581652 73581670 AGGAAAGTCACCTTGAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frmd8 ENSRNOG00000020881 ENSRNOT00000028331 1 1 1 89 1 221228106 221228342 CATAGCCATGGATGAGCCT 59 221227887 221227906 AAGACCTCCTCATCATGGAC 59 NA Rattus norvegicus 81 AABR07051548.1 ENSRNOG00000045966 ENSRNOT00000046489 3 1 1 122 3 16750193 16752338 CAATCTATGGCCTATTTGGCTG 60 16750092 16750110 TGGTTTCTGCTGGTACCAG 60 NA Rattus norvegicus 81 Gpr84 ENSRNOG00000036834 ENSRNOT00000055279 3 1 1 81 7 144935991 144936710 GAACCTCAGGTGAGTCTCC 59 144935928 144935948 TCGATAGCCCAATACAGACTC 59 NA InUTR Rattus norvegicus 81 LOC100363043 ENSRNOG00000029146 ENSRNOT00000049927 2 1 1 64 15 33333518 33333536 ACTCTTGTGATCTCTGGGC 59 33336745 33336763 GTGGAAGACGATTCCAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cbr4 ENSRNOG00000024411 ENSRNOT00000032199 1 1 1 80 16 31968654 31970173 GCAGCTGGTATTAACAGAGAC 59 31968594 31968614 CAAGAGGTTGGTATGAAGCTG 59 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 3 2 2 92 10 35713752 35714015 CATTAAAGAGAAGAAGGAGTGCC 60 35713682 35713701 CCATCACAAATCACGTTGGG 60 NA Rattus norvegicus 81 Fkrp ENSRNOG00000016055 ENSRNOT00000021586 3 1 1 107 1 78736284 78739070 GAAACCTAGGGAGGATGCC 60 78736195 78736213 GAGGTTGAGGATGATGGCT 59 NA InUTR Rattus norvegicus 81 AABR07044714.1 ENSRNOG00000053936 ENSRNOT00000089481 2 1 1 81 20 18157206 18157224 AGCCCTCCTTTCCTTAACC 59 18157268 18157289 CCACAGGAATCGGAAATCTC 59 NA Rattus norvegicus 81 Cpa2 ENSRNOG00000028092 ENSRNOT00000029608 2 1 1 80 4 57866160 57868238 AATTTCGGAGGACCTGGAG 59 57868280 57868300 CACTTCAACTTCAGAGTTGGG 59 NA Rattus norvegicus 81 Map3k12 ENSRNOG00000015134 ENSRNOT00000020437 2 1 1 80 7 144107171 144107279 AGAAGGTTGACATCTGGTCC 60 144107110 144107131 AGGAGTCTACATCTTTGTAGGG 59 NA Rattus norvegicus 81 Fam214b ENSRNOG00000009323 ENSRNOT00000012386 2 1 1 107 5 58479495 58479513 CTTCGAACTCTCCGGAAGG 60 58479286 58479426 CAGTGATTCCTCAAAGTTGCC 60 NA Rattus norvegicus 81 Rpl3l ENSRNOG00000014641 ENSRNOT00000019660 2 1 1 80 10 14104696 14104906 ATCACACTGAGGAAGTCCC 59 14104948 14104968 AGTGGTGTCAATGAACTTGAG 59 NA Rattus norvegicus 81 Bap1 ENSRNOG00000019097 ENSRNOT00000025853 2 1 1 80 16 7338976 7338994 TGCAGCAATGTGGATTTGG 59 7339037 7339546 ATATCCTTTGCTCTCAGGGC 60 NA Rattus norvegicus 81 Fam131a ENSRNOG00000046177 ENSRNOT00000075606 2 1 1 85 11 83900775 83900961 CCTGCATGGTATTTCCCAG 58 83900708 83900726 ATTCGATAAGGTGAGCCAC 57 NA Rattus norvegicus 81 Pawr ENSRNOG00000005917 ENSRNOT00000008222 2 1 1 81 7 51352559 51352577 GATCGAGAAGAGGAAGCTG 57 51303196 51352515 GTACTCATCTAAGCACTCCG 58 NA Rattus norvegicus 81 LOC691354 ENSRNOG00000023452 ENSRNOT00000031978 1 1 1 80 5 165472311 165472332 GTAATGAAGTGTCCCATGATCG 59 165472370 165478065 CCTAGAGACCTGGATGAATGAG 60 NA Rattus norvegicus 81 Cts8l1 ENSRNOG00000048693 ENSRNOT00000073585 3 1 1 80 17 4063828 4063846 AACAGGGAGAATTCCTTGG 57 4063887 4064002 CTTGAATTCTTCATCAGTCAGG 57 NA Rattus norvegicus 81 Olr1016 ENSRNOG00000003347 ENSRNOT00000004458 2 1 1 60 7 7189447 7189468 GATCATCTTTCTGACCCAAACC 59 7189408 7189427 TCGCAGGAAGAAGTACATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690521 ENSRNOG00000048094 ENSRNOT00000075275 2 1 1 60 3 149790962 149790982 TCAACTTCTCAGAGTTCTCCA 59 149791004 149791022 TCTTTAGCAGACATGGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galntl6 ENSRNOG00000038976 ENSRNOT00000059580 3 1 1 80 16 35573297 35577074 TCTCCTCAACCAAATTGCAC 59 35577116 35577135 TACCCAAAGTGACTGTGGTC 60 NA Rattus norvegicus 81 LOC100359671 ENSRNOG00000040039 ENSRNOT00000048888 3 1 1 60 11 29638895 29638916 AAATCTAAGAACCACACCACAC 59 29638856 29638876 TCTTGATACCATTTCTGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop10 ENSRNOG00000005184 ENSRNOT00000006887 1 1 1 68 3 103747760 103747778 ATTACCTCAACGAGCAGGG 60 103748038 103748056 AAGTCTGTTGTCCCATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Krtap13-2 ENSRNOG00000043083 ENSRNOT00000061620 1 1 1 60 11 28739552 28739574 TATGGATCTAGAATCTGCTACCC 59 28739594 28739612 AATTCATGGATCCGAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtb1 ENSRNOG00000023213 ENSRNOT00000057341 3 1 1 89 5 127269920 127269938 GATTCATCCTCTGCTCTGG 57 127268910 127269869 TTCTGACACCAAGCTATTTCC 58 NA Rattus norvegicus 81 Gramd4 ENSRNOG00000016968 ENSRNOT00000022746 1 1 1 80 7 127010091 127010109 GAAAGCTCCAAGTCTGGGT 60 127010147 127010790 GACTTTGTACTTCTGGATATCTGTG 59 NA Rattus norvegicus 81 Lad1 ENSRNOG00000009144 ENSRNOT00000012801 2 1 1 82 13 52655326 52655345 TATCTTCACCCACACTCACC 59 52655390 52656198 TTTCTTGAGGCTCATCCGG 60 NA Rattus norvegicus 81 LOC100912537 ENSRNOG00000047112 ENSRNOT00000074429 3 1 1 80 1 259100518 259100536 CCGAGAAGTGGGAATCCTG 60 259100047 259100477 CAGGGTCATAGAGTGACTTAGG 60 NA Rattus norvegicus 81 Khnyn ENSRNOG00000020506 ENSRNOT00000027802 1 1 1 80 15 34554606 34554624 CTCCCTGAGTCTGTTGTCC 59 34554668 34560667 ACCATGAACCTGTCATCGT 59 NA Rattus norvegicus 81 Cbr1 ENSRNOG00000047848 ENSRNOT00000042283 3 1 1 89 11 33813363 33813867 ATCGCCTTCAAAGTTGTTGAC 60 33813918 33813936 GCAGACATCTTGGGTACCA 59 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 1 3 3 80 12 25319505 25321069 GACAAGTCAGAGAAGTGGGA 59 25321112 25321130 AAACAGAATCTGCACGCAC 60 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 1 2 2 80 19 10877647 10877666 GGAAACCATTCACTGTACCG 59 10877091 10877607 CATAGTCGTAGCACATAACCTG 59 NA Rattus norvegicus 81 Dtna ENSRNOG00000016671 ENSRNOT00000045224 3 1 1 80 18 14633986 14634492 GAATCCTCCTCATCCCAGC 60 14634533 14634554 CCTTTGCTGTTTATTTGCATCG 60 NA Rattus norvegicus 81 Rfesd ENSRNOG00000012810 ENSRNOT00000017098 2 1 1 82 2 2778984 2779002 TGTCCATGGCAGAGAAGTG 60 2778828 2778938 GTCCTCCAGAATGGTAGCA 59 NA Rattus norvegicus 81 LOC100359715 ENSRNOG00000030301 ENSRNOT00000042653 3 1 1 60 18 39957107 39957126 GGACTTACAATGAGGCTTGG 59 39957066 39957085 CTCATGGAAGTGATGTTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Leo1 ENSRNOG00000010116 ENSRNOT00000013512 2 1 1 81 8 82385928 82385946 ATGAAAGGCCACAGGTCTC 60 82385990 82386776 CTTGCAGATTCCGACTTCTG 59 NA Rattus norvegicus 81 Smpd4 ENSRNOG00000001875 ENSRNOT00000043545 3 1 1 80 11 87538687 87538705 TACCGACTCAATGTGTCCA 58 87538749 87541531 GAAGGACTCTTGATAGGCG 57 NA Rattus norvegicus 81 Smpdl3b ENSRNOG00000042326 ENSRNOT00000067905 2 1 1 82 5 150925924 150928118 CAACTTGAAGGACATGGTGAC 60 150925862 150925880 GGTATTCCTGCTCCCACTG 60 NA Rattus norvegicus 81 Taar9 ENSRNOG00000026096 ENSRNOT00000038523 2 1 1 60 1 22319961 22319979 GGTGTTTCTCTATGGTCGG 58 22320002 22320021 ACCCTCTATCTTCCTAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrl ENSRNOG00000018528 ENSRNOT00000024991 2 1 1 60 15 34198616 34198634 TGTGGAACTACTGCAGAGC 60 34198574 34198593 TGAATAGTAGCCATGAGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc15a4 ENSRNOG00000000962 ENSRNOT00000001277 1 1 1 80 12 32765107 32765492 GACAGTGTATTTCCAAATGCAG 58 32765529 32765551 GTGGTGATACTTGAGATTTCTGG 59 NA Rattus norvegicus 81 Slc15a4 ENSRNOG00000000962 ENSRNOT00000001277 2 1 1 80 12 32765106 32765490 GGACAGTGTATTTCCAAATGC 58 32765529 32765550 TGGTGATACTTGAGATTTCTGG 58 NA Rattus norvegicus 81 Serpinb3a ENSRNOG00000002578 ENSRNOT00000003475 2 1 1 80 13 27154992 27155012 ATACCATACAAAGGCAAGGAG 58 27154318 27154952 CTGTTCTTCAAGCTTCTTCAG 57 NA Rattus norvegicus 81 Hpca ENSRNOG00000006979 ENSRNOT00000009153 3 1 1 80 5 147302998 147303016 CTTCAGCATGTACGACCTG 58 147296328 147302955 ATCTTGTAAATGGCCTGCAC 59 NA Rattus norvegicus 81 AABR07032582.1 ENSRNOG00000048409 ENSRNOT00000072205 2 1 1 80 18 72649756 72649813 CTTATTGACGTCATAAAGCGAC 58 72649697 72649716 GCATGTTTCATAGCTCTCCC 59 NA Rattus norvegicus 81 Apoa5 ENSRNOG00000018436 ENSRNOT00000024918 1 1 1 84 8 50559266 50559284 TCGCTACTTTGTGACAGAG 57 50559522 50559627 TTGCAAACACTGAGAGGAG 58 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001,ENSRNOT00000085483 2 2 2 80 4 56815281 56815514 GCTCATTACTGTACAGGTGGT 60 56815556 56815574 TCTGCTGACCAAGAAAGCT 59 NA Rattus norvegicus 81 Tuba1c ENSRNOG00000015544 ENSRNOT00000020932 1 1 1 80 2 199199997 199200015 CTTCAGTGAGACAGGAGCT 59 199200056 199200208 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000000058 1 1 2 81 13 91080503 91080744 GTCATGAAGACATGTCTAAACAGG 60 91080784 91080802 TTTGACTCTGCTTCCAGGG 60 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000047176 ENSRNOT00000075546 3 1 1 91 1 82952112 82952130 CTCAGAGAAGCCATGGGAG 60 82950752 82952059 TTACAGGTCAGCGTATCTGAG 59 NA InUTR Rattus norvegicus 81 Cyp2c23 ENSRNOG00000013291 ENSRNOT00000017840 1 1 1 80 1 263790550 263790568 AACAAGACGTTCCTCAACC 58 263790005 263790506 GTTGTACATCTGGCACCAC 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 1 3 3 84 7 40309704 40310565 CATTCCTGGTTGGGTACCA 59 40309638 40309658 GGCAATTCCAAACTCATAGCT 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 2 3 3 85 7 40310611 40310629 GCTGGATACCAGCAAAGGA 60 40309701 40310562 TACTGGTACCCAACCAGGA 60 NA Rattus norvegicus 81 Wdr38 ENSRNOG00000014102 ENSRNOT00000018921 3 1 1 81 3 23294074 23294092 CCTGGGTCAATAGCCTAGC 60 23294136 23294416 TCCCAGACTTTGACCATACG 60 NA Rattus norvegicus 81 P3h3 ENSRNOG00000016071 ENSRNOT00000021578 2 1 1 80 4 157372805 157372827 GGCTAAGTATAGGAGAATGTCTG 58 157372099 157372766 TCATAAGCTGCCCAATACAG 58 NA Rattus norvegicus 81 Med18 ENSRNOG00000047303 ENSRNOT00000072028 2 1 1 91 5 150653139 150653158 AGTCACCATGATGCCAGTC 60 150650347 150650367 TCAGACTTTCCAAACTGTGGT 60 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692,ENSRNOT00000072396 2 2 2 80 5 129276077 129277264 GAAATATTGATGCTGCTGTCC 58 129277306 129277324 AGCACATGTGGTGAAACTG 59 NA Rattus norvegicus 81 Eif4g2 ENSRNOG00000017158 ENSRNOT00000064535 3 1 1 80 1 175891266 175891284 CGATTGGCAGAAGATGCAC 60 175891113 175891223 TCTGAATGTTGTGCTTTGCT 59 NA Rattus norvegicus 81 AABR07034721.1 ENSRNOG00000049950 ENSRNOT00000046865 3 1 1 101 11 85189737 85189755 TCAACTCCATAGTGCACAC 58 85189825 85189843 ACAACTTCAACATGGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 3 2 2 80 8 114604201 114606648 ATCTGCTCTGATAAAGGATGTG 58 114604142 114604160 TGTAAGCCCTATGCTTCCA 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 2 2 2 80 18 15673312 15674181 ACCCAATTGCCAAGATCAC 58 15673250 15673268 GCTGATCAATTCCCACTCC 58 NA Rattus norvegicus 81 Apol2 ENSRNOG00000048970 ENSRNOT00000075248 1 1 1 82 7 118980475 118983539 TGAGTTGTCCAGAGCTGAC 59 118980411 118980429 TGTTCTGGTCTTCCTCAGC 59 NA Rattus norvegicus 81 Timp1 ENSRNOG00000010208 ENSRNOT00000013745 1 1 1 80 X 1368542 1368561 TGATAGCTTCCAGTAAAGCC 57 1366692 1368499 CCCTTATAACCAGGTCCGA 58 NA Rattus norvegicus 81 AABR07015559.1 ENSRNOG00000055015 ENSRNOT00000086658 1 1 1 80 14 63415744 63415763 CTCTTCTGTGGAGTTCTCTG 57 63415804 63439433 CTTTACCAATCCTCTCCTCAC 58 NA Rattus norvegicus 81 Fundc2 ENSRNOG00000024066 ENSRNOT00000033618 3 1 1 81 18 405935 405953 GCAGCTGAAGATCCATAGG 58 407053 407071 CTTCTTCACGAACGACAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tnfrsf1a ENSRNOG00000031312 ENSRNOT00000048529 2 1 1 80 4 157872614 157872633 ATAAAGGCACCTTTACAGCT 57 157872675 157872996 CCTGGAACATTTCTTTCCGA 58 NA Rattus norvegicus 81 Vom1r69 ENSRNOG00000058549 ENSRNOT00000088453 3 1 1 60 4 87455270 87455289 TATCTGTATCACCTGCCTCC 58 87455309 87455330 AGAGGTACTGGGACTTATTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkp1 ENSRNOG00000010076 ENSRNOT00000013531 3 1 1 80 13 52717038 52717056 GGTAACAGCAACATGTCCC 59 52715632 52716995 TGAACTCAGATTCCTCAGGC 60 NA Rattus norvegicus 81 Misp ENSRNOG00000010423 ENSRNOT00000013857 1 1 1 83 7 12699202 12700528 AAGGAGTCGTGGTATGCAG 60 12698270 12698288 CTTGTGTCGCTTTACCCTC 59 NA Rattus norvegicus 81 AABR07014114.1 ENSRNOG00000040213 ENSRNOT00000043131 2 1 1 81 14 1355064 1355084 GATCCCTCACAGAAGAATCTC 58 1355124 1355502 GTTCCCAATCATAGCCTATAGC 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 2 3 3 80 5 173479582 173480058 TTCACTCTGTTTGATGAAACCC 59 173479523 173479542 CCTGATCAGAAAGATGCCCT 60 NA Rattus norvegicus 81 Rn60_X_0749.1 ENSRNOG00000003008 ENSRNOT00000004016 1 1 1 60 X 74057691 74057712 ACACAGACCTTTCTCTATCTCC 59 74057730 74057751 GCTTTCCGAATAAACTTAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907,ENSRNOT00000088674 1 2 2 80 14 44657490 44657509 TTGCCAGTGTCTTGTAAACC 59 44657550 44665282 GTCATCGTCTTCATCTGTCTC 58 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 1 2 2 80 6 104280893 104283648 ATCTCAGCTGTCTTGTTTACC 58 104280833 104280854 CGTAGATCTTCTCTTTGATCCA 58 NA Rattus norvegicus 81 Actr3b ENSRNOG00000031855 ENSRNOT00000041876 3 1 1 81 4 5652622 5652640 GGAGTCCATCTCGGATGTC 59 5652683 5671138 AACGATGTTCTTATACAGCGG 59 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 1 2 2 80 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741583 228745379 ACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000075840 1 1 2 80 X 140880650 140880671 AGCCCTATATCTGTAAAGTGTG 58 140880709 140881559 GAGATTCATGAACCTTCATGTG 58 NA Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000075840 3 1 2 94 X 140880709 140881559 CACATGAAGGTTCATGAATCTC 58 140881614 140881632 TTTGCAGAAGCTATAGCGG 58 NA Rattus norvegicus 81 Olr1394 ENSRNOG00000047636 ENSRNOT00000043058 2 1 1 60 10 34673577 34673598 CAACCCTCTGATCTATACCCTG 60 34673619 34673637 TAGCACCTTCCATAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi2a ENSRNOG00000022764 ENSRNOT00000039261 2 1 1 81 10 66871294 66873845 CTCTGTAAGATACCAGTGTACC 58 66871234 66871252 CACACTGTTGTCATCAGGA 57 NA InUTR Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 1 2 2 80 1 199019939 199026204 GGACATCATTGGCAGAGGA 60 199026245 199026266 ATCTTCACTGCAAACTCATCAC 59 NA Rattus norvegicus 81 Zc3hc1 ENSRNOG00000010154 ENSRNOT00000013604 2 1 1 80 4 57699462 57699480 GCTCAAGAAATCCTTGTGC 57 57693293 57699421 AACATCCCAAATCTATCTGGAG 58 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 3 2 2 128 5 166915700 166923309 AACGGACTTGATCCTGAGC 60 166915590 166915608 GAGGTAGGCTTTGAGGGAG 59 NA Rattus norvegicus 81 Nudt19 ENSRNOG00000059386 ENSRNOT00000079088 2 1 1 80 1 91827108 91827126 AGTACCCGAGAAATGGCTG 60 91820706 91827065 ACATACAGCTCATCTCCTGG 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638 3 1 4 84 20 3827671 3827864 ATACTGTTTAACCCAGACGC 58 3827911 3827929 TCTCCAGTGAGGCATACAC 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000091182 3 1 4 145 20 3824223 3824831 AGCCCTCAGATTAACTCCA 58 3824940 3824958 ATTGCACAAAGTCGTTTGC 58 NA Rattus norvegicus 81 Aplf ENSRNOG00000043059 ENSRNOT00000041234 3 1 1 80 4 119530185 119534627 ACTGCTACAGGAAGAATCCG 60 119530124 119530142 CTGTGACAGGTACAGCTCC 60 NA Rattus norvegicus 81 Dhx15 ENSRNOG00000003844 ENSRNOT00000005126 2 1 1 80 14 61145632 61154759 CATTCTTAAGTATATGACTGACGGG 59 61154795 61154815 ATTATCACACCATAACGCTCC 58 NA Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000082338 2 1 2 83 14 64476815 64488648 ATCAACCAGAAAGGAATCGAC 59 64476752 64476770 ATAGATGGCCACTATGGGC 59 NA Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000077017 1 1 2 81 10 70424425 70424725 CTGAAGGACAGAGCATTTAAGAC 60 70424366 70424384 GCTTCCTCTGACTTCCAGG 60 NA Rattus norvegicus 81 Chrna9 ENSRNOG00000002484 ENSRNOT00000003382 3 1 1 80 14 43885838 43888359 CATTGTCCTATACAACAAGGCT 59 43885779 43885797 ATGAGCCCATCATATCGCA 59 NA Rattus norvegicus 81 LOC681458 ENSRNOG00000013279 ENSRNOT00000018090 2 1 1 80 1 263994093 263994111 CACAGGACTTACAAGGCTC 58 263994153 263995555 ATACACATCGTTCTGGAAAGC 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 3 2 2 83 6 132551490 132551508 AGCCGGATCAACATCTACC 59 132551555 132555560 GATCACAACCTGCTGATCC 58 NA Rattus norvegicus 81 Noc2l ENSRNOG00000021392 ENSRNOT00000066561 2 1 1 80 5 173665508 173665526 CAGCATATCAGCAGCTTGG 59 173665567 173665854 CAGAACTATCATCCTCTTGACC 58 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000090303,ENSRNOT00000034642 2 2 2 89 14 38108162 38108180 ACTGTGATGGTTATCCACG 57 38107435 38108110 GGAAATGAACCCTGGATCTC 58 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 3 2 2 80 4 56732307 56732325 AGTATCCGTGCTCCTTCAG 59 56732367 56732464 GGTAAAGGAGATCCCAATGTG 59 NA Rattus norvegicus 81 Hbz ENSRNOG00000020536 ENSRNOT00000027851 2 1 1 81 10 15610733 15610754 GAGCTATCATCATGTCCATGTG 59 15609888 15610691 CTGAAGAGCCTCTCCAGAG 59 NA Rattus norvegicus 81 AABR07065804.1 ENSRNOG00000049252 ENSRNOT00000068561 3 1 1 101 6 141866516 141866536 GAGATGATTCACAAAGCATGG 58 141866414 141866456 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Foxc1 ENSRNOG00000017800 ENSRNOT00000023957 2 1 1 60 17 33950662 33950681 GCTACATCGCTCTTATCACC 58 33950621 33950640 TTCAGGGTGATCTTCTTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx46 ENSRNOG00000021637 ENSRNOT00000029885 2 1 1 80 17 9490201 9491642 TCTTCACGGAGGTATTGATCAG 60 9490142 9490160 GCTACGAGAAGTTTGCAGG 59 NA Rattus norvegicus 81 Rfx6 ENSRNOG00000027949 ENSRNOT00000030642 2 1 1 80 20 32741540 32741560 GAACCCTTCTTCCAGAATTCC 59 32741600 32744622 TGAGAGTGTCAACCTTATCCT 58 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 1 2 2 80 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314806 105314825 CAGAGAAGATGACGAACCCA 60 NA Rattus norvegicus 81 Bbs2 ENSRNOG00000019020 ENSRNOT00000026076 1 1 1 80 19 11402832 11403482 GACAGAGACAGAGATAGTCACC 60 11403521 11403541 CCAACTGTGCCATTAGAAAGG 60 NA Rattus norvegicus 81 Cpsf3l ENSRNOG00000019712 ENSRNOT00000026725 1 1 1 80 5 173323643 173323664 TTCTCAGATGATCAAAGACTGC 59 173323704 173333475 TCCAGTTCATCATCCACCTG 60 NA Rattus norvegicus 81 Fam134c ENSRNOG00000020056 ENSRNOT00000027217 2 1 1 80 10 89012994 89013842 TTGGACAATGAGAGTTGGG 57 89012932 89012950 CCAGACTTCAGCTACATGG 58 NA Rattus norvegicus 81 RGD1309188 ENSRNOG00000009255 ENSRNOT00000012269 3 1 1 234 8 22626174 22626192 AAGTGGTACCACGACAGTG 60 22626469 22626487 AGAACTTGATGCGTCAAGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911764 ENSRNOG00000049279 ENSRNOT00000071721 2 1 1 82 1 99355406 99355787 TATGCAAGGGTGACTCAGG 59 99355833 99355851 ACCACATGGCATAGAACCC 60 NA Rattus norvegicus 81 Farp1 ENSRNOG00000011203 ENSRNOT00000015271 3 1 1 80 15 106621921 106622861 ATCACACCAGGACAGTCAC 59 106622904 106622923 ATGTTCTCAGACTCTGAGGG 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000088678 3 2 6 60 1 41323246 41323264 ATTCGAGCACATTCCTTCC 58 41323284 41323306 CATGGGTTTGTAGAAGTCAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumo2l ENSRNOG00000032840 ENSRNOT00000049609 2 1 1 60 5 14983672 14983691 AACCAATCAACGAAACAGAC 57 14983711 14983732 TCAATCGTATCTTCATCCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361061 ENSRNOG00000025179 ENSRNOT00000038531 1 1 1 103 20 43143075 43143096 CATGAGGTCGGGAAGTACC 60 43143163 43143181 CTTACCCTCAAGAGCTGCT 59 NA Rattus norvegicus 81 Afg3l1 ENSRNOG00000026994 ENSRNOT00000030399 2 1 1 80 19 56277816 56281287 GTAGCTCCAAACAAAGAGCC 59 56281329 56281348 GGTGAAGTCATCTCCCTTCC 60 NA Rattus norvegicus 81 Olr1073 ENSRNOG00000031688 ENSRNOT00000042747 1 1 1 60 7 13379067 13379085 CACCTTTCTGTTGTCTCCT 57 13379109 13379127 CAGCAGAACTGAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.1 ENSRNOG00000049049 ENSRNOT00000075709 3 1 1 60 4 103368967 103368988 GATCAGTAGAGTAGAGCCTGAG 59 103368928 103368949 ATAATGTGTACCTTGGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Secisbp2l ENSRNOG00000008629 ENSRNOT00000011551 2 1 1 80 3 118036389 118036407 AAGAAACAAGTGCAGCAGG 59 118034100 118036347 ATGGGAAATCAGTTTGCTGTG 60 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 3 5 5 80 13 55080386 55080404 ATGATCTGGGAGCAGAAGG 59 55079662 55080345 ATATTCTGCACACTTGTTCCTG 59 NA Rattus norvegicus 81 Cirbp ENSRNOG00000015999 ENSRNOT00000021648 1 1 1 100 7 12402856 12402874 GAGACTCAACGATCCCGAG 60 12402695 12402792 CTCCCATCCACAGACTTCC 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000086003,ENSRNOT00000026748 2 2 3 80 1 199515021 199515041 TCCATCAAAGGATAAAGCCAC 58 199515081 199515353 GAAGCATAACCCAAGTAAGCA 59 NA Rattus norvegicus 81 Proc ENSRNOG00000014376 ENSRNOT00000019596 3 1 1 108 18 24920751 24920769 AGAAGAAGCTAGCCTGTGG 59 24919082 24920680 TCATACTCACCAAGCCTCAC 60 NA Rattus norvegicus 81 Usp43 ENSRNOG00000003785 ENSRNOT00000065383 3 1 1 80 10 54445663 54445682 AACAGAGCAACACCTTTGAC 59 54444140 54445622 AAGTGACACTCAAGAATCTCG 58 NA Rattus norvegicus 81 Rab4a ENSRNOG00000017467 ENSRNOT00000049337 3 1 1 81 19 56607006 56607024 GGAACAAGAAGGACCTGGA 59 56607066 56610366 AACATGAGCTCATTCTCTTGTG 59 NA Rattus norvegicus 81 Ubc ENSRNOG00000057823 ENSRNOT00000085692 2 1 1 99 12 36638484 36640237 CTGACAATGCAGATCTTTGTG 58 36640298 36640316 CCTGGATCTTTGCCTTGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kctd7 ENSRNOG00000042384 ENSRNOT00000001198 3 1 1 83 12 30024905 30025309 TTACAAAGACCATTTGGAGCG 59 30024842 30024860 ACTTTGAGCTTGGCAAAGC 60 NA Rattus norvegicus 81 Colec11 ENSRNOG00000008373 ENSRNOT00000011290 3 1 1 81 6 47858947 47859430 AGAACCTGGTATTCCATGTG 57 47858885 47858903 AGTTGTCAGTTGAGTGACC 57 NA Rattus norvegicus 81 Fam114a2 ENSRNOG00000002423 ENSRNOT00000058619 2 1 1 81 10 42903064 42903083 GCACATGCACATGTATACAC 58 42900749 42903022 ACTGTCATCACTGTGAATTCC 58 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011,ENSRNOT00000085516 1 2 2 80 18 24869737 24870604 AAAGATTCTGCAAGAGCTACCT 60 24870643 24870663 TACAGATACATCACTGCTCGG 60 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646,ENSRNOT00000082042 2 2 2 131 17 10061644 10061662 CTTACAAGAGCTCCGAGGA 59 10052740 10061549 TCATGTGCTCCACTTCCTC 59 NA Rattus norvegicus 81 Pi4k2b ENSRNOG00000003924 ENSRNOT00000005349 1 1 1 80 14 60578144 60580475 TGAAAGTGAGGAATCAAACTGG 59 60578085 60578104 GGAAATGCTAGCCCATTGTC 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 1 2 4 80 4 163845297 163845318 GAATGGATGTAAACAGACCTGC 60 163838425 163845257 CGAAGGAACTTCAGTTCGTC 59 NA Rattus norvegicus 81 Ppan ENSRNOG00000020608 ENSRNOT00000027973 3 1 1 81 8 21906886 21907096 GTATACTTGAAGCTGATGCGA 58 21907229 21907248 CAACATCCCGTATCAGTGTG 59 NA Rattus norvegicus 81 AABR07061131.1 ENSRNOG00000049268 ENSRNOT00000040075 1 1 1 80 4 106289847 106290589 TCTTCTGGATTTCTGCTTCC 58 106290632 106290650 CTTGACTTCCAAGGCTGAC 59 NA Rattus norvegicus 81 LOC100911248 ENSRNOG00000001868 ENSRNOT00000002552 3 1 1 91 11 87790984 87791003 CAGAATGGACCTGTCTTTGC 59 87782096 87790930 ACAATGTCACCAACCTCCA 59 NA Rattus norvegicus 81 LOC682102 ENSRNOG00000048129 ENSRNOT00000072793 1 1 1 80 5 146024115 146030388 AGGGATATGGGTTCAACTCTG 59 146024055 146024074 AGCGTATACCATTCCCACTG 60 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 2 2 2 80 10 55494368 55494386 CTACATTGAGCGAGTCCAG 58 55494430 55495384 GTGATAACCACCTTGCTGG 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000083286,ENSRNOT00000041442 3 2 3 66 6 99985705 99986942 CTCTTCTGGAGCAACAAGTC 59 99985658 99985676 TAGTTGGTCTGCAGTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978,ENSRNOT00000086117 2 2 2 90 11 87375333 87375354 TGGACGTGAGAAATAAGAAGGT 60 87375404 87375511 GTCTTAGGGCTACTTCCTGG 59 NA Rattus norvegicus 81 Gdap2 ENSRNOG00000019754 ENSRNOT00000026953 2 1 1 80 2 202479290 202480057 AAAGTGGTTCTTTGGAAAGGAG 59 202480095 202480116 ATCTGTGAGGCTTTCATTACTG 59 NA Rattus norvegicus 81 AABR07065651.1 ENSRNOG00000046572 ENSRNOT00000071492 2 1 1 134 6 138772550 138772568 CTCAAATCCCGACTGAGCA 60 138772063 138772452 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Dmrta2 ENSRNOG00000008105 ENSRNOT00000067277 3 1 1 120 5 129756604 129756622 TTACGAAGTCTTTGGCTCG 58 129757946 129757964 AAACTTCTGCAACTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1538 ENSRNOG00000039704 ENSRNOT00000050197 3 1 1 60 11 43281537 43281556 TGTTCCTACTGTTCCTTGTC 57 43281578 43281597 GCAATCAGTCCGAGATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 2 3 3 80 3 118184469 118184490 TAACATCTGTATCGACAAGACC 58 118184530 118188300 CCAAAGTGTTCCTGAATTCC 57 NA Rattus norvegicus 81 Psmc3ip ENSRNOG00000020022 ENSRNOT00000027159 2 1 1 81 10 89003454 89003472 AGTATCATGGCCCTCACTG 59 89002945 89003412 TTGTTAATTCCTTCAGCTCAGC 59 NA Rattus norvegicus 81 LOC100910837 ENSRNOG00000050235 ENSRNOT00000071834 1 1 1 60 10 44376136 44376154 CGGACACCTTTCTCTTCAC 58 44376094 44376112 ATGTTGCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1445 ENSRNOG00000046040 ENSRNOT00000073040 1 1 1 60 10 44569448 44569469 CTCTATCATCACTCCTGTTCTG 58 44569490 44569508 CATGACCTCCTTGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000075564 1 1 2 86 8 133197108 133197126 TCCAAGAGCTTGATGAGGG 59 133197174 133213286 CTGCAATTTGTTTCACACTGG 59 NA Rattus norvegicus 81 Olr1234 ENSRNOG00000057471 ENSRNOT00000082919 1 1 1 60 4 1459492 1459515 GGAAACCTGAGCTTAATGAATCTC 60 1459533 1459552 AGTACATGGGAGTGTGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs1 ENSRNOG00000046794 ENSRNOT00000075270 1 1 1 80 5 147936810 147939304 CAAAGCCAAGGAGGAAGAG 58 147936748 147936768 TCAATGAAGACATGCAGATCC 59 NA Rattus norvegicus 81 Gtse1 ENSRNOG00000016148 ENSRNOT00000022012 2 1 1 80 7 126744065 126744083 TCTAGGCTGCAAGACAGAG 59 126744127 126748121 TCAGGTGACTCACCAACAG 59 NA Rattus norvegicus 81 LOC100911489 ENSRNOG00000048233 ENSRNOT00000070803 2 1 1 83 9 16139144 16139861 CAAGTGACTTCGGAGAGGA 59 16139906 16139926 TGTCCCAAATATCTTCCACTG 58 NA Rattus norvegicus 81 Skint10 ENSRNOG00000022988 ENSRNOT00000033163 2 1 1 81 5 133056174 133056192 CTTATCTGGGAGTGTCTGC 57 133053299 133056130 AAATAGAAGCTTGGCTCCTG 58 NA Rattus norvegicus 81 Edil3 ENSRNOG00000033064 ENSRNOT00000064991 1 1 1 80 2 17982819 17984548 AATGAAGAAATGGTCTTCCGTG 59 17984588 17984607 CTGAGCTTTGATTGGAGGTG 59 NA Rattus norvegicus 81 LOC689574 ENSRNOG00000046109 ENSRNOT00000073846 2 1 1 104 4 62789159 62789833 CCCAGAACTACGACATAAACG 59 62789899 62789917 TCTTCTTGGCTTCCAGGTC 59 NA Rattus norvegicus 81 LOC689574 ENSRNOG00000046109 ENSRNOT00000073846 3 1 1 105 4 62789159 62789833 CCCAGAACTACGACATAAACG 59 62789900 62789918 TTCTTCTTGGCTTCCAGGT 59 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 1 2 2 81 1 105142217 105154152 TTATATCAGAGTGGATGGGCT 58 105154194 105154213 GCCAAGTATTTGCTCTTTGC 58 NA Rattus norvegicus 81 Ecel1 ENSRNOG00000019447 ENSRNOT00000026387 3 1 1 80 9 94248961 94249070 CAGAGGCTAGCTAATATCTCTG 58 94248902 94248922 CAGAGTCACTTTGTTGTACAC 57 NA Rattus norvegicus 81 Zcchc6 ENSRNOG00000016629 ENSRNOT00000022373 2 1 1 80 17 5262853 5262872 GCTTACACTCTTATGGTGCT 58 5262912 5263223 ACCTTTGTATATCTCCTGAAGC 58 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158,ENSRNOT00000081621 1 2 2 80 9 16047793 16048804 CGTAGCACATTTCAAGAAACC 58 16048846 16048864 AGGTTGAACTCTTTGGCAC 58 NA Rattus norvegicus 81 Rimbp3 ENSRNOG00000030452 ENSRNOT00000051991 2 1 1 60 11 88034507 88034525 CTTCTCCAGGGTTCATCCA 59 88034465 88034485 TCCCAACACAGTATCTTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gypc ENSRNOG00000029939 ENSRNOT00000046369 2 1 1 94 18 25314266 25316762 TCATTGCAGCTGTGATCAC 59 25314190 25314208 GTAGTAAGTGCCCTTGTGC 59 NA Rattus norvegicus 81 LOC100362620 ENSRNOG00000014130 ENSRNOT00000019234 1 1 1 80 17 13588737 13588755 GAGTGGAGGAGACTTGGTG 59 13587968 13588695 GAGAAGAATATGCGGTTCTGG 59 NA Rattus norvegicus 81 LOC100362620 ENSRNOG00000014130 ENSRNOT00000019234 3 1 1 82 17 13588743 13588761 GAAGAGGAGTGGAGGAGAC 59 13587972 13588697 AGAATATGCGGTTCTGGCT 59 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000079824,ENSRNOT00000088795 3 3 3 80 6 103470250 103470268 ATATGCAGCCTGAAGAGGA 58 103418089 103470206 CCGTGAAGGTCTTTCTCTG 58 NA Rattus norvegicus 81 Dok4 ENSRNOG00000015679 ENSRNOT00000021037 1 1 1 80 19 10572256 10572276 TCAATGACATCAGTCTGGGAG 60 10572316 10572419 GGAAGACATTGAAGCGATCTG 60 NA Rattus norvegicus 81 AABR07065217.2 ENSRNOG00000042542 ENSRNOT00000039910 1 1 1 60 6 115769603 115769623 CAAGTATGACGACATCAAGGA 58 115769563 115769581 GATGCCCTTTAGTGTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armc10 ENSRNOG00000012785 ENSRNOT00000044020 2 1 1 81 4 10019789 10019807 GTATCTACCGGCTGACTCG 60 10016290 10019744 CCCTCCGTTAGGTCTTCTG 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000035129 1 2 3 80 13 56096871 56098747 TCGATGTGGAAAGGGTGTC 60 56098788 56098809 ATCGTTGCTTACTTTCCATGTC 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 1 2 2 80 18 26584329 26604922 AGAGAAACAGAATACGACAGGA 59 26584270 26584291 TCTCCTTCTGTCTCCTTAACAC 59 NA Rattus norvegicus 81 Lama1 ENSRNOG00000017237 ENSRNOT00000023226 1 1 1 80 9 115972040 115972814 AAATGGCGCTGTATAGATTGG 59 115972856 115972874 CATCAGCAGCAACTACCAG 59 NA Rattus norvegicus 81 Dnase2b ENSRNOG00000016262 ENSRNOT00000021861 2 1 1 80 2 252439114 252441679 CAGTATGAGACAATAGATTCTCAGC 59 252439058 252439076 CCAGCGAAAGATGTTTGGG 60 NA Rattus norvegicus 81 Dnah11 ENSRNOG00000005451 ENSRNOT00000007233 1 1 1 80 6 145859042 145859060 TGGGTCCTTCACAAGACAG 59 145853113 145858998 GGGATGGAAACCTTCTGCT 60 NA Rattus norvegicus 81 Slc34a1 ENSRNOG00000015262 ENSRNOT00000033749 3 1 1 80 17 9759056 9759180 GCTTATCATCCAGCTGGAC 58 9758994 9759014 CGAATGAGACTGTGATTCCTC 59 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287,ENSRNOT00000040740 1 2 2 80 1 261421577 261423465 TCTGAATGAGGGTGCATGG 60 261423509 261423527 CACACCTCCTGAAGGTAGC 60 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 1 2 2 91 17 9836506 9837060 CCCTATAGCAAACATGTCTTAACC 60 9836438 9836456 GTCTTGGTCAGGAGTCTCC 59 NA Rattus norvegicus 81 Rpl31l3 ENSRNOG00000029926 ENSRNOT00000049211 3 1 1 60 7 35550170 35550188 GGTGACCCGAGAATACACC 60 35550128 35550146 CTTCTTGAAGCCCACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000046368 2 1 2 60 2 95079025 95079046 AACATGAACGCCATAGAAATCG 60 95080569 95080589 GAAGACTTTCAGGAAGAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Smco4 ENSRNOG00000011162 ENSRNOT00000014827 1 1 1 91 8 14060557 14060575 ATCAGTTGACCCACGTCAG 60 14079308 14079326 CTTGAAGAAAGGGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Cdc73 ENSRNOG00000003258 ENSRNOT00000004495 3 1 1 80 13 60421599 60421620 TTATTATTCCTGCAGCTACCAC 58 60412367 60421561 ATGGGACAAATTTCAGATCCTG 59 NA Rattus norvegicus 81 Got1 ENSRNOG00000016356 ENSRNOT00000022309 1 1 1 80 1 263253557 263253575 TAGGGCGATGGTACAATGG 59 263253054 263253513 CGCCATTATGGTTCTCCCA 60 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 1 2 2 80 5 150472366 150472384 CAGGATTTGGCTCTGAGGA 59 150472428 150473340 GGATCAACGCCATTCTCTG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787,ENSRNOT00000088006 1 3 3 80 12 37629207 37629225 AGGTCTGAACTTGATGTGC 58 37629266 37632845 AGCAATATTCTTGTCTCCATCC 58 NA Rattus norvegicus 81 Cldn17 ENSRNOG00000027691 ENSRNOT00000032663 2 1 1 60 11 28477809 28477828 TTCGTTCTGATTCCAGTGTC 58 28477768 28477787 TTGGGTCGTAGAAATCTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap20 ENSRNOG00000042179 ENSRNOT00000061392 1 1 1 80 19 10036418 10036439 GATTAAACTGCCTTTCCTTGTC 58 10036479 10036991 TTGTCATCTAGTACCTGCAC 57 NA Rattus norvegicus 81 Cfap20 ENSRNOG00000042179 ENSRNOT00000061392 3 1 1 80 19 10037100 10037121 GTTCAACCTATCTGACTTCACC 59 10037162 10037898 CAGTTTGCATGGATCTGCA 59 NA Rattus norvegicus 81 Pcdh7 ENSRNOG00000012367 ENSRNOT00000049245 1 1 1 80 14 55078412 55078432 TCAATTGGATCAGATCACTGC 59 55072600 55078372 GTATGGATGTACACGCATCTG 59 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000084062,ENSRNOT00000009666 3 2 2 80 6 76196145 76196165 ACTTACATCTGTAGCTGTCAG 57 76196205 76196663 GAATCCAGTAGTTTGTCAGGT 58 NA Rattus norvegicus 81 RGD1561410 ENSRNOG00000023774 ENSRNOT00000051577 3 1 1 60 7 64292599 64292617 ATGAAGAGCCCATCCTACC 59 64292640 64292659 CCAAGCTCTATTTCCCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040,ENSRNOT00000017195 3 2 2 80 13 56873760 56873780 ATAATCAGAGCACCATCACCT 59 56865737 56873718 ATTTCCCTGCTGAATTGGG 58 NA Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 1 2 2 80 1 126177905 126177923 GGCGTTCTAGAAGATAGCC 58 126175320 126177864 GAAATCTACATTGTTCACCCTG 58 NA Rattus norvegicus 81 Irf2bpl ENSRNOG00000011026 ENSRNOT00000014645 2 1 1 60 6 110902988 110903006 ACCAGGATTGCATGAAGGA 59 110902946 110902966 TACTCCAGGTATTTGAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4a1 ENSRNOG00000042139 ENSRNOT00000029072 3 1 1 80 4 155950978 155950996 GACAGTGAGGAGAAGTGCT 59 155949764 155950936 ATCAGTGATGAAATCCTGCTC 58 NA Rattus norvegicus 81 Kif3c ENSRNOG00000011394 ENSRNOT00000015820 1 1 1 80 6 27770561 27791844 CCAAGTACAAGGCCATGGA 60 27791886 27791906 ACATCTTCTGTTGTTCGTTGG 59 NA Rattus norvegicus 81 Nop16 ENSRNOG00000017284 ENSRNOT00000023320 1 1 1 80 17 10561714 10563586 CTATGTGGTTAATGACCTGGAG 58 10563627 10563645 TAATCGATGAGGTCCCGAG 58 NA Rattus norvegicus 81 Kif20a ENSRNOG00000024428 ENSRNOT00000033784 3 1 1 80 18 27428500 27428519 CCTAGCCATCAGCATAAGAG 58 27428562 27428675 CCAGTTGAGGTCTTTCACG 59 NA Rattus norvegicus 81 Ttc9b ENSRNOG00000018850 ENSRNOT00000025472 3 1 1 113 1 84471912 84471930 TTCAAGGCCACCTATCGTG 60 84472006 84472813 GAGAACATTGGTGTCTGTGG 59 NA Rattus norvegicus 81 Dusp16 ENSRNOG00000006628 ENSRNOT00000009151 3 1 1 81 4 168480575 168499194 CTCAACAAGGAGCTGATGC 59 168480512 168480532 GTATGAAGTCAGGCTTTGGAC 59 NA Rattus norvegicus 81 Tbx15 ENSRNOG00000019565 ENSRNOT00000067358 3 1 1 80 2 201352733 201353746 AAGGACACATCATTCTGCAC 59 201353787 201353807 AAAGATCACTGCTGAAGTCCT 60 NA Rattus norvegicus 81 Rbm34 ENSRNOG00000020004 ENSRNOT00000027145 3 1 1 80 19 59877829 59878334 TTCCTTACAGAGTGGATGAGTC 59 59877770 59877788 TTCTCACGATCCTCACTGC 60 NA Rattus norvegicus 81 Chkb ENSRNOG00000011404 ENSRNOT00000015374 2 1 1 80 7 130405112 130405278 TTGGCTACTTGGAATACGC 58 130405050 130405068 AAGGTGATAGGAAGCTGGT 58 NA Rattus norvegicus 81 AABR07065651.4 ENSRNOG00000050972 ENSRNOT00000075376 1 1 1 116 6 138679316 138679334 AATCCCGACTGAGCATCAG 60 138679124 138679238 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 2 2 2 97 10 70328334 70332639 ATTTCAAGTGTCAGCAGACTG 59 70328257 70328280 GCTGGCTTATTAAGTTCTCTAGTC 59 NA Rattus norvegicus 81 Mtcp1 ENSRNOG00000024071 ENSRNOT00000033663 3 1 1 117 18 411795 411813 CTCTGGGTTCACTGTGAGG 60 411580 411598 CCAGAGGAACTGGAACTCG 60 NA DesignNoJunction Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415,ENSRNOT00000079719,ENSRNOT00000082985 2 3 3 80 6 51282913 51291109 CTGGATCCAGAACAGATGTC 58 51282852 51282871 TTGATCGATTACGTGTTCCC 58 NA Rattus norvegicus 81 Prr11 ENSRNOG00000006198 ENSRNOT00000038296 2 1 1 80 10 74404184 74407404 AAACTTGAAGAGCATCTCGG 58 74404123 74404142 ACAGTTGTAAGTCTGTCACC 58 NA Rattus norvegicus 81 Hmha1 ENSRNOG00000013220 ENSRNOT00000060648 3 1 1 80 7 12730688 12731041 GAATGTGAAGAGTGCTGTCTG 59 12730628 12730647 CTGAAGCTTCTTGTGACCAC 59 NA Rattus norvegicus 81 Fbxo2 ENSRNOG00000009409 ENSRNOT00000012670 1 1 1 80 5 164977161 164977179 GAGCATGAAGATGTGCTGG 59 164977223 164977441 GTGGGAGATCTCCATCCAG 59 NA Rattus norvegicus 81 Cdc25a ENSRNOG00000020737 ENSRNOT00000028141 3 1 1 80 8 117954841 117954860 ATGAGAAACCAATGGACGTG 59 117954901 117955919 GACAGAAACCTGAATCAGTCG 59 NA Rattus norvegicus 81 Klrh1 ENSRNOG00000059182 ENSRNOT00000079813 2 1 1 80 4 163603045 163603064 GATGAAAGTGAGGCATCCTG 59 163599239 163603006 CTGAATAAAGTTCTGCTCCTCTC 59 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 2 2 2 80 20 33117974 33118574 ACTTCATTCACAGGGATCTGG 60 33117914 33117932 CGATCTTGACTACCCGAGG 59 NA Rattus norvegicus 81 Psma1 ENSRNOG00000011745 ENSRNOT00000015946 3 1 1 80 1 183736070 183736090 ATGAACTGGTTAAGCATGGTC 59 183735431 183736031 TGGAAACATTCTTTGTGGTCAG 60 NA Rattus norvegicus 81 LOC100910531 ENSRNOG00000026277 ENSRNOT00000024322 3 1 1 80 3 121547917 121548563 CAAGGAAGAAGACGACACAG 59 121548603 121548624 GTCCTCAGTATTGACTTGACAC 59 NA Rattus norvegicus 81 AABR07065782.1 ENSRNOG00000033376 ENSRNOT00000064361 2 1 1 60 6 141198537 141198556 CTGTTGGAATCTGGAGGAGG 60 141198496 141198514 CTGCACAGGAAAGTCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065782.1 ENSRNOG00000033376 ENSRNOT00000064361 3 1 1 60 6 141198306 141198329 CGTCCTCTATCTTCAAATGAACAC 60 141198269 141198288 TGCACAGTAGTAAATGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acss1 ENSRNOG00000007102 ENSRNOT00000009627 3 1 1 80 3 146423572 146427251 ACATCAAAGGAGAAGCTGC 58 146423510 146423528 TGAGCTCATTTACCACCAC 58 NA Rattus norvegicus 81 Lrrtm4 ENSRNOG00000021938 ENSRNOT00000030588 1 1 1 116 4 110700403 110702287 CAAAGGATGGGTTTCCGTC 59 110702367 110702385 GTTCTTTGGGCAAGCTCTC 59 NA InUTR Rattus norvegicus 81 Olr813 ENSRNOG00000005412 ENSRNOT00000007168 3 1 1 60 4 72503010 72503030 CTCTTTGTCCTCTTCTCACTG 58 72503052 72503070 CTAGGATGGTCCCATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcor1 ENSRNOG00000049783 ENSRNOT00000073989 3 1 1 60 6 135550403 135550421 GTTATGAGCACTGAGTGGC 59 135550444 135550463 TCTTAACCATACCGAGCGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmper ENSRNOG00000015357 ENSRNOT00000033460 2 1 1 80 8 24511584 24513442 GTATGCACTTGCAAGGACTC 59 24513482 24513503 GGCATCCTCATCAGTATTACAG 59 NA Rattus norvegicus 81 Akt2 ENSRNOG00000018677 ENSRNOT00000025303 2 1 1 80 1 84431168 84431186 CTTTGTCATACGCTGCCTG 59 84431229 84441060 CACTCTTCCCTCTCATCTGG 59 NA Rattus norvegicus 81 LOC500227 ENSRNOG00000009917 ENSRNOT00000013312 2 1 1 90 4 114859153 114859291 ACTTCCACAACGAAGAACCT 60 114859344 114859362 GAAGATTGTGTCGGCTCCT 60 NA Rattus norvegicus 81 Prkacb ENSRNOG00000004978 ENSRNOT00000068739 3 1 1 80 2 252610770 252610788 GCGTGAGTGACATCAAGAC 59 252605432 252610727 ATGGAGCCTCAACCTTTCTC 60 NA Rattus norvegicus 81 Prg3 ENSRNOG00000037908 ENSRNOT00000057616 3 1 1 80 3 72397088 72398719 ATAAGGCTCAGAAACTCTGCA 60 72398759 72398779 GAACTTGGAAGTTGAAACCGA 59 NA Rattus norvegicus 81 Tmem120b ENSRNOG00000048050 ENSRNOT00000074517 2 1 1 81 12 38909576 38909597 AAGTTTAAGCTCTACCTGACCA 59 38907195 38909534 CGTCTGTCACCCTGTAGTG 60 NA Rattus norvegicus 81 Rasd2 ENSRNOG00000014761 ENSRNOT00000020017 3 1 1 86 19 14658778 14658796 ATGTACCAGCTGGACATCC 59 14658846 14661586 GAAGACGTCTCCTGTGAGG 60 NA Rattus norvegicus 81 LOC100910224 ENSRNOG00000050309 ENSRNOT00000075691 3 1 1 60 2 115239207 115239228 TGATCCTGCTCATCATAGTCAG 60 115239168 115239189 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912291 ENSRNOG00000047310 ENSRNOT00000074957 1 1 1 80 5 2654127 2654147 CAACTGCTTTCTGTTTGAGAG 58 2654186 2656366 TCTTCTAGACCAAATGCTTTCC 59 NA Rattus norvegicus 81 Rgs2 ENSRNOG00000003687 ENSRNOT00000005156 2 1 1 83 13 60846998 60847017 TCACCACAGAAACTGTCCTC 60 60846690 60846957 GTCTATGTTTATCTCTTTGGGAGC 59 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 3 2 2 81 18 28654625 28654643 GACTGGCCATCAGATTTGC 59 28654687 28655897 AAGCATCACCTTCTCCAGAG 60 NA Rattus norvegicus 81 RGD1561102 ENSRNOG00000043412 ENSRNOT00000067777 1 1 1 60 7 29281381 29281400 AACTAGGAGAATGGGTAGGC 59 29281340 29281359 ATCACTTTACGAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 81 18 56312641 56312659 TATGTTGCCTCTGTCACCC 59 56312507 56312596 AAAGGCAAACTGGCTATCG 59 NA Rattus norvegicus 81 Mpzl2 ENSRNOG00000016085 ENSRNOT00000021693 1 1 1 80 8 49349379 49349401 GAAGAGGAGAAACTCAATCAAGG 59 49349441 49350891 AATCCTCAGCTTCCCACAG 59 NA InUTR Rattus norvegicus 81 Heatr6 ENSRNOG00000002542 ENSRNOT00000003492 2 1 1 80 10 71056612 71056633 TTAATCAGAACCACCTTGTGAG 58 71056674 71058187 GCTCATCCACAATCACCTG 59 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 1 2 2 81 3 152631148 152631166 ATGGACTTGAGCTATGCCC 60 152631211 152635247 ACTGGAGTTCACCAAGGAC 59 NA Rattus norvegicus 81 LOC100911305 ENSRNOG00000048668 ENSRNOT00000070844 2 1 1 60 9 61824846 61824866 ACTACGCACTTGTAAATGCAG 59 61824886 61824906 TCGTTATAATAGCCCGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Susd5 ENSRNOG00000026951 ENSRNOT00000028675 1 1 1 82 8 122350838 122367093 AGCCTGTGGGAAAGATGAG 59 122367139 122367157 GTTCCCTGAATGACACGGA 60 NA Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000083157 2 1 2 85 1 222619952 222619971 ACCACCGACAGTAAGAACTC 60 222619716 222619905 ATGGTCTAAGCTGAAGAGGG 59 NA InUTR Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000034477 2 1 2 87 1 222620663 222620747 GTAGTAAGGAGTCAGGCCA 58 222620594 222620612 AAGAGGACCACGATCTCTG 59 NA Rattus norvegicus 81 Ckb ENSRNOG00000010872 ENSRNOT00000015122 1 1 1 80 6 136143763 136143783 GTTATCTCCATGCAGAAAGGG 59 136143593 136143724 GAGAGTTTCAATCTGAGTGAGG 59 NA Rattus norvegicus 81 Neurl4 ENSRNOG00000016109 ENSRNOT00000021883 2 1 1 80 10 56517754 56517854 ATCGAAGCTGGAGTGACTG 60 56517894 56517916 CCACGTATCATAGTCAATGTCTG 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 1 2 2 80 19 10341168 10341412 CAGGAGATATCAAGACATCGG 58 10341108 10341129 TGACAATATTCAGAAGGTCCAC 58 NA Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 1 2 2 80 1 277664025 277664821 AGTTCTCAGAGGATGACCA 57 277664865 277664883 CGACATATCCAACCAGGAC 58 NA Rattus norvegicus 81 Spred3 ENSRNOG00000051915 ENSRNOT00000083817 3 1 1 89 1 88110108 88110543 CTCAGCCAGAATCCTCCTC 59 88110037 88110057 AGATACTTAGGGCAGACAAGG 59 NA Rattus norvegicus 81 AABR07060165.1 ENSRNOG00000048544 ENSRNOT00000065546 3 1 1 106 4 60547684 60547789 ACATCCCACAAAGCAAAGG 59 60547596 60547614 ATAGGGCTGCTTGTCATCC 60 NA Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 2 2 2 80 13 68836906 68836924 ACACCATGACCACAAAGGA 59 68836211 68836865 ATTCTTTGTTGCCACTTCTGAG 60 NA Rattus norvegicus 81 Apcdd1 ENSRNOG00000043304 ENSRNOT00000067554 3 1 1 108 18 58285697 58285715 GGTAGAGGAGCTCTTCCTG 59 58285787 58297155 ATGGTTGTGATTCTTGGCG 59 NA Rattus norvegicus 81 RGD1309104 ENSRNOG00000028236 ENSRNOT00000059807 1 1 1 81 13 69355967 69384864 GGATGTGTTTGGCGATGAG 59 69355904 69355922 TTTCTGCTCCTCTTCTGCC 60 NA Rattus norvegicus 81 Rnd3 ENSRNOG00000004624 ENSRNOT00000006111 3 1 1 85 3 36648994 36649013 TTACCCAGATTCTGATGCTG 57 36646370 36648949 CACCTTTCCACTTCTTTAAGAC 57 NA Rattus norvegicus 81 Slc6a11 ENSRNOG00000005697 ENSRNOT00000008342 1 1 1 80 4 146220466 146221266 CTGGGTGTATGGAAGTAACAG 58 146221307 146221326 CACCACTTGATGAGTGACAG 59 NA Rattus norvegicus 81 Mtcl1 ENSRNOG00000025527 ENSRNOT00000050012 2 1 1 80 9 114606359 114606377 AGCACATGATCGAAGTGGA 59 114550937 114606317 TTCTCTTCAGAGAACTCTCCC 59 NA Rattus norvegicus 81 Vom1r21 ENSRNOG00000039019 ENSRNOT00000059668 3 1 1 60 19 28377502 28377524 TCTATCTTCACAGAATAGGGAGG 59 28377544 28377562 AAGACACTCAGAAAGCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Obsl1 ENSRNOG00000015346 ENSRNOT00000020673 1 1 1 80 9 82696898 82696919 AGATGACGATGGTGTCTATCTG 60 82696762 82696857 AGGATGGGTCCTTTGACAG 59 NA Rattus norvegicus 81 Cct7 ENSRNOG00000015630 ENSRNOT00000021030 2 1 1 80 4 117246800 117246818 GATGCTTGACGAGTTGCTG 60 117246862 117248534 ACTAGTCGAGACTCCTCCA 59 NA Rattus norvegicus 81 AABR07065814.2 ENSRNOG00000042319 ENSRNOT00000066416 1 1 1 80 6 142353053 142353073 GCATGGTCTACCTACAAATGG 59 142352862 142353012 TCCAGATACAATGTGCTGCT 60 NA Rattus norvegicus 81 Skint4 ENSRNOG00000042047 ENSRNOT00000041421 1 1 1 80 5 132008917 132014551 CACTGAGTTCAGAACAATTCAC 58 132014591 132014610 AACTCAGGTCAACATTTCCA 57 NA Rattus norvegicus 81 Cpa1 ENSRNOG00000010725 ENSRNOT00000014465 2 1 1 80 4 57955371 57955561 CTGGTTTGCAAAGAAGATCAC 58 57955602 57955621 AGGAAGATGTCCATGTTGTC 58 NA Rattus norvegicus 81 LOC690422 ENSRNOG00000005153 ENSRNOT00000029223 2 1 1 80 6 137970643 137971032 TCAGTAAGATCCATCTGTATACCC 59 137971071 137971089 GCATCTCTGTTTCAGCGAC 59 NA Rattus norvegicus 81 Mir489 ENSRNOG00000036271 ENSRNOT00000054394 3 1 1 60 4 28659570 28659589 CACGTTCTCGTGTATTCCAG 59 28659529 28659550 TGTTCCTGTAACAGTTTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000007876 1 1 2 126 9 17212320 17212343 GCATCTCTAAAGGATGAAGTTCTG 60 17212216 17212236 TTAACACCAAACCAACGTGG 59 NA Rattus norvegicus 81 Otop1 ENSRNOG00000028423 ENSRNOT00000050367 2 1 1 80 14 77236443 77238548 TTGCAACATCTCGCTTTGG 60 77236381 77236402 CCAAAGACAATTTCCTCCAGTC 60 NA Rattus norvegicus 81 LOC679576 ENSRNOG00000014865 ENSRNOT00000019925 1 1 1 60 10 58784678 58784696 CTTAGGAGCAAGTCCTCCG 60 58784720 58784738 CAGTCGATGTCTCCTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam180a ENSRNOG00000011750 ENSRNOT00000015752 3 1 1 82 4 62847662 62847680 AAAGAGGTCCTTGTCCCTG 59 62846213 62847617 CTAGCAAGAGCTCATACAGC 58 NA Rattus norvegicus 81 AABR07055878.1 ENSRNOG00000046286 ENSRNOT00000055284 2 1 1 90 7 14743243 14743264 TGGTTAGAATAGTTGTGGAACC 58 14743315 14743527 TGTGGCCATTCATTCACAG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845,ENSRNOT00000006144 1 2 2 80 6 144110322 144110342 ACAATGGTTTAGAGGCTACTG 58 144109789 144110283 CAAAGTCGTCTTCATAATCCAC 58 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 3 2 2 81 12 40435421 40435439 GTTCTGAGGAAGAAACCGC 59 40435483 40438267 CAAGGGCTTTCATGATCCTG 59 NA Rattus norvegicus 81 Astl ENSRNOG00000022603 ENSRNOT00000039043 2 1 1 81 3 119787452 119787473 GTGACCAATAATAAATGGCCCA 59 119787515 119787928 TGGGTTCATCGTACTTGCT 59 NA Rattus norvegicus 81 Tmem88 ENSRNOG00000009870 ENSRNOT00000013439 3 1 1 104 10 56000076 56000095 TTCAATCTCCTCTTGTTGGC 58 55999862 56000009 CTGAGAACGCAGAAACTGG 59 NA Rattus norvegicus 81 Tmem121 ENSRNOG00000005174 ENSRNOT00000006872 2 1 1 60 6 137997550 137997568 TGGCTACGCTATGATCCTC 59 137997589 137997610 GAAATAGAGCTTGATCTCCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 3 2 2 80 6 55423172 55423191 TCAGGGCTGATATAACTGGA 58 55423234 55423757 TGTTGTCTATCAGCATGGG 57 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054,ENSRNOT00000085535,ENSRNOT00000017568 3 3 3 80 16 49543723 49544914 GGTATTGTAGGTGCTGTGG 58 49543661 49543679 GTTGAGGTTACAGTCAGCA 57 NA Rattus norvegicus 81 Tmem128 ENSRNOG00000005346 ENSRNOT00000007115 3 1 1 87 14 77275519 77277890 TCACACCAATAGTTGGTTTCTC 59 77275453 77275474 CCATTCCAGATAGACTATGCAG 58 NA Rattus norvegicus 81 Pnma3 ENSRNOG00000052022 ENSRNOT00000079424 1 1 1 84 X 153065742 153066241 GAACTCAGATGGGAACATCC 58 153066288 153066306 AAATGGACTTGAGGTTGCT 57 NA InUTR Rattus norvegicus 81 Trim67 ENSRNOG00000019024 ENSRNOT00000032359 1 1 1 80 19 57580374 57581656 AGCTGAAGATGGTTTGGGA 59 57581700 57581718 CCAGGCAGTACTCCATCAG 60 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 1 3 3 80 12 37680956 37688473 ATTGTAGTCAAGTGCCACC 58 37680894 37680912 ATCCACTTTCTCCTGGAGG 58 NA Rattus norvegicus 81 Apobec4 ENSRNOG00000028089 ENSRNOT00000036906 2 1 1 80 13 70157672 70164332 TGGAGACAAAGCTGATCTG 57 70164375 70164394 CACTGTGGGTTAGATACTCC 57 NA InUTR Rattus norvegicus 81 Vom2r75 ENSRNOG00000022955 ENSRNOT00000036914 1 1 1 80 18 35119 35138 CTTACAGGACCACATTGGAG 58 33279 35077 AAGCTGAAGGAAATGTGGAG 58 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 2 2 2 80 17 17828342 17836684 TTAAAGTTTGAACGAGAGGTCC 59 17828283 17828301 GATATGGCACACTGTCTGG 58 NA Rattus norvegicus 81 Grk1 ENSRNOG00000018430 ENSRNOT00000024999 1 1 1 80 16 81156327 81156346 TATGCATTCGAGACCAAGAC 58 81156386 81157715 ATTGTAGATGTGGTACCTTACG 58 NA Rattus norvegicus 81 Klk1c12 ENSRNOG00000047662 ENSRNOT00000025631 1 1 1 82 1 99301020 99301038 ATCAACAGATACCTCTGCG 57 99300040 99300976 TGGTAATTGTGGCTATAGCAG 58 NA Rattus norvegicus 81 Klk1c12 ENSRNOG00000047662 ENSRNOT00000025631 2 1 1 82 1 99301019 99301037 TCAACAGATACCTCTGCGG 59 99300039 99300976 ATGGTAATTGTGGCTATAGCAG 58 NA Rattus norvegicus 81 Tcte1 ENSRNOG00000019961 ENSRNOT00000027031 1 1 1 80 9 17855639 17855659 ACCTCTTTCTCTTCACCTACC 59 17851209 17855600 GTCTGAAGATCTTGAGAGTGTG 59 NA Rattus norvegicus 81 Rph3a ENSRNOG00000001368 ENSRNOT00000001844 2 1 1 80 12 41147551 41148044 ATGATTACATCGGAGGCTG 57 41148086 41148106 TGTTCTTCAGACACTCATACC 58 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883,ENSRNOT00000068077 2 2 2 80 6 71035999 71036884 CTGGCTACAGGACTACCAG 59 71035937 71035961 CTTTCATGGGTAATATAGCGTTCTC 60 NA Rattus norvegicus 81 Rfxap ENSRNOG00000028382 ENSRNOT00000000101 3 1 1 88 2 144215273 144217041 TCAAACTGGAGGAAAGCAC 58 144215203 144215221 TAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 Tmem97 ENSRNOG00000022657 ENSRNOT00000011808 1 1 1 91 10 65820456 65820474 TACTTCGTCTCGCACATCC 60 65813553 65820401 AACAGGTTGCTGAACTCCT 59 NA Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 2 2 2 84 7 141092658 141093221 TACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 Rps2 ENSRNOG00000014179 ENSRNOT00000019508 1 1 1 80 10 14089635 14089653 TCCAAGACCTACAGCTACC 58 14089693 14089910 GTCAGTGAATTCCTGATAAGGAG 59 NA Rattus norvegicus 81 Ifnl3 ENSRNOG00000026584 ENSRNOT00000035328 2 1 1 115 1 85236698 85236716 TGACACTGAAGGTCTTGGG 59 85236500 85236619 CTGAGGCTCTGTACAGGTC 59 NA Rattus norvegicus 81 Ddx55 ENSRNOG00000001043 ENSRNOT00000001387 2 1 1 80 12 37464078 37464096 TGAAGAGCTTGGATGTCCT 58 37462983 37464035 GGATTGTGTTTATGCTTGCC 58 NA Rattus norvegicus 81 Pgbd5 ENSRNOG00000026791 ENSRNOT00000058080 1 1 1 80 19 57134849 57134872 GAAGAACTACATCATCTTCACAGG 59 57132856 57134811 CAGTAGATGCCTTGCTTCTC 59 NA Rattus norvegicus 81 LOC100361349 ENSRNOG00000009168 ENSRNOT00000012135 2 1 1 60 2 192481132 192481150 CCAGAGTCTTGTCCTCCTC 59 192481090 192481109 TCTGTTGGTATGAGGGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311703 ENSRNOG00000053659 ENSRNOT00000090773 3 1 1 81 1 185559970 185559988 GAGCATGGACAGCAAACTG 60 185559017 185559930 TTCTCCATCATGATCTTCTACCTC 60 NA Rattus norvegicus 81 Tubgcp5 ENSRNOG00000011480 ENSRNOT00000055989 2 1 1 80 1 114208430 114209736 AGAGATTTCAGGCTAGTGGA 58 114209777 114209797 GAAGTCATACATGGTGTCTCC 58 NA Rattus norvegicus 81 RGD1306271 ENSRNOG00000013729 ENSRNOT00000040391 2 1 1 80 4 65887758 65890116 CCTCACAGTGCAGATTGTG 59 65887696 65887717 GCAAAGATAATATTCACTGGGC 58 NA Rattus norvegicus 81 LOC100910835 ENSRNOG00000048343 ENSRNOT00000075524 2 1 1 80 8 122417672 122420916 TACTTCAAGGCCAATGACC 57 122417610 122417628 CATCATCTCGTCCTCAGGA 58 NA Rattus norvegicus 81 AABR07065834.1 ENSRNOG00000048384 ENSRNOT00000074930 2 1 1 80 6 143130980 143131081 TAACTGCAGGAGTCCACTC 59 143130918 143130936 ACAGCTTCACAGAAGTCCC 60 NA Rattus norvegicus 81 LOC100361515 ENSRNOG00000017915 ENSRNOT00000024348 3 1 1 80 10 56617562 56617583 AGATTACTTTCTCTGAGCAGTG 58 56617620 56617956 GAGACAGGTTAACTAGGTAACTC 58 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 3 2 2 81 2 18412045 18415166 CATCCAACTTCAATGGCCG 60 18415211 18415229 TTGAGACAAGCTTGCACTG 59 NA Rattus norvegicus 81 Mrpl21 ENSRNOG00000013845 ENSRNOT00000018848 1 1 1 81 1 218536926 218537485 TGGAGAAGGTCCTATTGGT 57 218538424 218538442 TCAACTCGTACGAGATCCT 58 NA Rattus norvegicus 81 RGD1304624 ENSRNOG00000006986 ENSRNOT00000009180 1 1 1 80 6 75953851 75959547 CGGTGACAGAATAAAGGTGC 59 75953790 75953810 TTCATTACAATGATGTCGGCG 60 NA Rattus norvegicus 81 Rps8 ENSRNOG00000054626 ENSRNOT00000081747 1 1 1 81 5 136022506 136023007 CAACACTAAGATTGGCCCTC 59 136022444 136022462 ATCCAATCTCAGAGCACGA 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 3 2 2 81 6 24163119 24181540 TCCTATCAGATCTTTCCCGAC 59 24181583 24181601 GTTCCACCACTATGGAGGG 60 NA Rattus norvegicus 81 Poc1b ENSRNOG00000024450 ENSRNOT00000031905 2 1 1 80 7 41357913 41368219 GGAGACGATTGAAATCAATCCA 59 41368257 41368278 AAAGAAAGGACATCCACAACTG 59 NA Rattus norvegicus 81 AABR07062859.1 ENSRNOG00000031564 ENSRNOT00000052280 2 1 1 60 6 11859682 11859700 CTGATGTTGGTGTCATCCC 58 11859640 11859659 TTCTGTCGTCCTTTCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683,ENSRNOT00000065058 2 2 2 80 9 100940432 100940450 CTACAGCAAGTGCAAGGAG 59 100940490 100942900 CGGATATGTTTATCCACCATCTC 59 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 1 2 2 83 1 79983401 79985157 ATTCAATGAAGAGCGGCTG 59 79985203 79985222 GAAGCAAGGAACAGACTCTC 58 NA Rattus norvegicus 81 RGD1562929 ENSRNOG00000050799 ENSRNOT00000056321 3 1 1 60 9 117867522 117867541 GAAAGAGGAGAGGTACTCGG 59 117867481 117867499 GGAACGACTCCATGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsfy2 ENSRNOG00000038569 ENSRNOT00000058831 2 1 1 60 9 63290379 63290400 CTGCTCCTTTAAATGATGTGTC 58 63290340 63290361 GCTTGAGTGTAGATTCTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361105 ENSRNOG00000030812 ENSRNOT00000042900 1 1 1 80 6 141147080 141147185 CCTTCCTGGTATCCTGTCTG 59 141147019 141147037 GTGAGGGAGAGTGACTGTG 59 NA Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402,ENSRNOT00000067379 1 2 2 87 10 49023094 49023112 CAAGATGTACGGCAAGCAC 60 49023163 49024575 GTACAATTTGTGGCCAGCC 60 NA Rattus norvegicus 81 Pdcd1 ENSRNOG00000049797 ENSRNOT00000074915 3 1 1 90 9 101309179 101309197 ATCATGAGCGTCCTAGTGG 59 101308541 101309125 CTCTGGCCTCTGACATACC 59 NA Rattus norvegicus 81 Ccl22 ENSRNOG00000016535 ENSRNOT00000022167 3 1 1 64 19 10679800 10679818 ACTGGACCTCAAAGTCCTG 59 10675686 10675706 GATATCTCGGTTCTTGATGGT 57 NA DesignNoJunction Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 3 2 2 80 10 55631044 55631650 GGATTGTCAAGGTAGACCTG 58 55631693 55631711 TATGTTTGAGCAGCTTGGA 57 NA Rattus norvegicus 81 Fbp2 ENSRNOG00000017637 ENSRNOT00000023865 2 1 1 85 17 382092 385997 TACAGAAAGACCACAGAGGA 58 382026 382044 TACAGTGCATAACCTGCAG 58 NA Rattus norvegicus 81 Fbp2 ENSRNOG00000017637 ENSRNOT00000023865 3 1 1 85 17 382092 385996 ACAGAAAGACCACAGAGGA 58 382025 382044 ATACAGTGCATAACCTGCAG 58 NA Rattus norvegicus 81 Fam114a1 ENSRNOG00000026504 ENSRNOT00000002883 1 1 1 80 14 44953223 44953243 AAGGAAAGGAAGAGAAAGCTG 58 44952102 44953182 TGTACACCTCCTCTACAGTC 58 NA Rattus norvegicus 81 Armc1 ENSRNOG00000013253 ENSRNOT00000018548 2 1 1 84 2 103963282 103963300 GAATGTCGTGCGAACAGAG 59 103957211 103963237 GAGTTGTAGTCTTCTGGATGAC 58 NA Rattus norvegicus 81 Tex35 ENSRNOG00000038921 ENSRNOT00000006548 2 1 1 80 13 74730437 74730456 TTGGCTAGTGAGAAGATGGT 59 74730050 74730394 CAAACATTTCTCGCATGCA 58 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 1 2 2 80 4 148432877 148432896 AGATGACCAAATCCACATCC 58 148417360 148432835 CACTCCATCCATCGATACTG 58 NA Rattus norvegicus 81 Tmc2 ENSRNOG00000007017 ENSRNOT00000009323 1 1 1 80 3 122764415 122764435 TTACTTTGTGGTGAAACGGTC 59 122764477 122765910 ACGATCTCCACCTCATTCC 59 NA Rattus norvegicus 81 Cbx6 ENSRNOG00000046955 ENSRNOT00000068033 1 1 1 81 7 121053103 121057340 CTTTCCTCCTAAAGCCAAGC 59 121053041 121053059 ATGTCTTTCTTGAGCCGGT 59 NA Rattus norvegicus 81 Krtap3-3 ENSRNOG00000045678 ENSRNOT00000039983 2 1 1 194 10 87468579 87468597 TCCTCTGACAAGTCCTGTC 58 87468403 87468421 ATAGGTGGTGAGGTTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap1-5 ENSRNOG00000054186 ENSRNOT00000084798 1 1 1 60 10 87500566 87500584 CGTCCATCCTACTGTGGAC 60 87500524 87500542 ATTAGCAGCAGTAGCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0873.4 ENSRNOG00000057025 ENSRNOT00000086816 2 1 1 60 10 87470207 87470227 GAGATCAGTGACACCAATGGA 60 87470167 87470185 CCAGTTGAGACAGAGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 3 2 2 80 14 79865248 79865269 AATACTATGTCTCTTATCGCCG 58 79865310 79872063 TGATCTGTAGGTCCTTGGG 58 NA Rattus norvegicus 81 Krt39 ENSRNOG00000031422 ENSRNOT00000051080 3 1 1 80 10 87434581 87434599 AGATGCCAGTATGAGTCCA 58 87434416 87434538 ATTCAGTTCCTCCATCTGTG 57 NA Rattus norvegicus 81 Dtd2 ENSRNOG00000006727 ENSRNOT00000009020 2 1 1 90 6 72785240 72786708 GAGATTCGGAGAGGATTGGT 59 72781634 72785189 CGTTTAACAGCGTATTGACCA 59 NA Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000076039 3 1 2 81 1 166670094 166670488 CATGAACTTTGAGGAGGTGAC 59 166670033 166670054 CTCATACTGGTCATCAAATGCA 59 NA Rattus norvegicus 81 Tesk1 ENSRNOG00000053729 ENSRNOT00000080909 2 1 1 80 5 58940877 58940895 CCTTTGGGATTGTCCTCTG 58 58940939 58941079 GACCAAAGTCCTCAGTACG 58 NA Rattus norvegicus 81 AABR07026893.1 ENSRNOG00000050796 ENSRNOT00000072930 3 1 1 81 17 3729724 3729742 TCCCTTCCAGAAGAAGCTC 59 3729466 3729684 GTCTTCCCAATTAAAGCCTATAGC 60 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 2 2 2 80 16 54011874 54016018 CTTCTGGACCAACCTATAGAG 57 54016058 54016078 ATTCATGCCATCTCTTGTAGG 58 NA Rattus norvegicus 81 Dr1 ENSRNOG00000048308 ENSRNOT00000074874 1 1 1 82 14 2474217 2474235 TATCTTCCGAAGCCAACGA 59 2468257 2474173 ACTTTCTAGTGCTTGGATGAC 58 NA Rattus norvegicus 81 LOC690335 ENSRNOG00000032771 ENSRNOT00000050217 2 1 1 60 6 95889894 95889912 GTATGTTCCCTTGGCTCCT 59 95889852 95889872 GATGATCCCAATCTTGTTGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105,ENSRNOT00000082037 1 2 2 80 5 153696903 153696922 AGAAGAACTCCACCAAGACG 60 153694072 153696860 AGAACGTCTCCTTCGTCTC 59 NA Rattus norvegicus 81 Cds2 ENSRNOG00000021265 ENSRNOT00000028888 3 1 1 82 3 124930203 124930222 CTCTCCAAAGAAGACCTGGG 60 124930267 124931051 ACATCACGTAGGAGAGCAG 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 3 2 3 80 20 5094132 5094151 CTCGAGTGATGACAGAGGAG 59 5094193 5094288 AAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000050171 ENSRNOT00000048054 2 1 1 60 7 13531372 13531390 TCATCATGGCCATCATCAC 58 13531330 13531351 TTAGCAAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Strn ENSRNOG00000004806 ENSRNOT00000006527 1 1 1 80 6 1275941 1275962 CACAAGTTGAAATATGGGACAG 58 1271188 1275901 CGTTTCATTGCCTTCATCAG 58 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 2 1 1 95 X 15324583 15325007 GCTGAGGTACTTGCTAGGG 60 15324506 15324524 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775,ENSRNOT00000037589 3 2 2 96 3 149337641 149338102 TGTCATCTACGGCATGGAG 59 149337563 149337582 CTGGAGCTGAAATGTCTGGA 60 NA Rattus norvegicus 81 Mir3561 ENSRNOG00000045781 ENSRNOT00000071252 1 1 1 60 7 26427762 26427780 CAGAACCTGAGACTGTGTC 58 26427720 26427738 AGGACATATGCTGCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 2 2 2 80 13 73920573 73921084 CCGTAATATTGAAAGCCATTCC 58 73920514 73920532 CCTTATGGCTCCTTCTCTG 57 NA Rattus norvegicus 81 AABR07033279.1 ENSRNOG00000050713 ENSRNOT00000009911 3 1 1 83 11 15083028 15083049 CACAACATAATGAAAGTTGCCC 59 15083092 15085508 GTGCCACTCCTCATATTCCT 59 NA Rattus norvegicus 81 AABR07065768.1 ENSRNOG00000050944 ENSRNOT00000048463 1 1 1 60 6 140485742 140485877 AAAGGTGTCTGGTGTGAGG 60 140485700 140485718 TTCCAGGCTGTACTAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Mcm8 ENSRNOG00000021272 ENSRNOT00000028898 1 1 1 80 3 125481289 125481307 GATAGCTGTGTCCCAGGAG 59 125481347 125481590 CTTAGATCGAGAACCTTCTTCAC 59 NA Rattus norvegicus 81 Hmgcl ENSRNOG00000009422 ENSRNOT00000012853 1 1 1 80 5 154303142 154303161 ATAGAGGAGAGTTTCCAGCG 59 154303203 154304990 GGAGACATACCCTCTCACAG 59 NA Rattus norvegicus 81 Hipk1 ENSRNOG00000019333 ENSRNOT00000056079 2 1 1 80 2 206234010 206234687 GTCTCATCCACATCTTCTCTG 58 206233950 206233969 AGATGTGGTACGAAGAGGAC 59 NA Rattus norvegicus 81 Stx6 ENSRNOG00000003402 ENSRNOT00000035145 1 1 1 80 13 72822061 72822080 CTGGATGCGACTGAATTGAG 59 72822121 72830592 CATCTGATCCTTCATGTCCCT 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000077568 2 1 2 119 10 88537802 88538473 GAACCATGTTGTGGGTTCTG 60 88539131 88539149 TCACACTTGTTGCCAAGGA 60 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000077568 3 1 2 120 10 88537802 88538473 GAACCATGTTGTGGGTTCTG 60 88539132 88539150 GTCACACTTGTTGCCAAGG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024622 2 1 7 80 19 15309152 15309171 ATTTCTGAGAGTGGTGTGGT 59 15309211 15310321 AAGAGTAGCAATCATTTGAGCC 59 NA Rattus norvegicus 81 Sbspon ENSRNOG00000007258 ENSRNOT00000009530 1 1 1 80 5 2835812 2835832 CTCTGCCTTCAACAAGAAGAG 59 2835871 2837476 ATACAGTATCCAGCATCCTCAG 59 NA Rattus norvegicus 81 Pou3f2 ENSRNOG00000006908 ENSRNOT00000009043 3 1 1 60 5 36682278 36682297 GAACAAGTGGTTGGAAGAGG 59 36682237 36682256 GATCTTGTCTATGCTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eftud2 ENSRNOG00000002818 ENSRNOT00000055176 2 1 1 80 10 90949172 90949528 CAATCCTAAGACGAGAAAGTTCAC 60 90949115 90949133 GGCTCCAAGATGAACTCCA 59 NA Rattus norvegicus 81 Lrrk2 ENSRNOG00000004048 ENSRNOT00000005438 1 1 1 80 7 132932887 132934755 GCTCTTCAACATCAAGGCTC 59 132934796 132934816 TGCTTCTCATCAGAAACATCC 58 NA Rattus norvegicus 81 Rpap2 ENSRNOG00000023484 ENSRNOT00000002815 1 1 1 80 14 3175764 3183105 AAGAAAGGACAAAGTGGCTG 59 3175703 3175722 ATAAGCATCGACATCTGCTG 58 NA Rattus norvegicus 81 Xrcc4 ENSRNOG00000029966 ENSRNOT00000045850 3 1 1 80 2 18805606 18806697 ACCTGAAAGGGAAACTCCG 60 18805544 18805562 CCGCTTTCTTCATCAGTGC 60 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 2 2 2 80 10 110905680 110906716 ACCAGTGACTTTGTTGTCC 58 110906760 110906778 CCGTAGGTGAATGACTGAC 58 NA Rattus norvegicus 81 Bcl3 ENSRNOG00000043416 ENSRNOT00000025913 3 1 1 115 1 80733421 80733626 GATGCAGTGGATATTAAGAGCG 59 80731926 80731944 TACATCTGAGCGTTCACGT 59 NA Rattus norvegicus 81 Spatc1 ENSRNOG00000029590 ENSRNOT00000050522 3 1 1 88 7 117342822 117349552 GAGAAGATCATCCAGGCCT 59 117349604 117349622 ATGCTCACATAACGCTGTG 59 NA Rattus norvegicus 81 Rbm19 ENSRNOG00000001397 ENSRNOT00000001891 3 1 1 80 12 41932992 41933010 AAGAAGATGACAGGGACCG 59 41921862 41932948 GAAGGCTTTCTTTGCGTCC 60 NA Rattus norvegicus 81 Rn60_20_0141.1 ENSRNOG00000001226 ENSRNOT00000037297 3 1 1 60 20 11928623 11928641 TGGCAGTGATTCAGTGGAG 60 11928581 11928599 TTCTTCGGGCTTAAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem230 ENSRNOG00000021263 ENSRNOT00000028886 1 1 1 60 3 124877119 124877138 ATGGCTACATTGACCTTCAG 58 124874788 124874806 GCTATGGCCTTGTAAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Dnajc10 ENSRNOG00000006803 ENSRNOT00000009839 1 1 1 80 3 67540030 67540051 CAGCAGAGAAATAAGACAAGCC 60 67540091 67541443 TGTGCATTTGGGTTATTCGG 59 NA Rattus norvegicus 81 Ly6g5c ENSRNOG00000000846 ENSRNOT00000001122 3 1 1 80 20 5102495 5104101 TGCACATAAAGAACAGCAGC 60 5104141 5104162 TATAGGAGCAATCCACCATCTG 60 NA Rattus norvegicus 81 Pde1b ENSRNOG00000036828 ENSRNOT00000055272 1 1 1 80 7 145138621 145140778 GCTTCAAGATTCCCACAGTG 59 145140817 145140839 GGTAAGGGTTCTTATATTTCCCG 59 NA Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637,ENSRNOT00000036148 3 2 2 80 5 149934418 149940872 CAACTACATAGACGGCTACC 58 149933764 149933785 CAGAAGTCGTAGATCATCTCAG 58 NA Rattus norvegicus 81 Ythdf3 ENSRNOG00000010084 ENSRNOT00000067556 1 1 1 80 2 100683769 100696659 GCCAGACAAATCAGAATAACAG 58 100696699 100696718 GAAATCCAATGGATGGAGCA 58 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 2 2 2 81 3 119061199 119061219 TCCATTAAGCTGTGGTTTGTG 59 119058768 119061156 TAGCCATGTCTGTACCGTG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000016819 1 1 3 239 8 22966769 22966787 TGAGGCGGGTACTAAATGC 60 22966990 22967648 ATCGAATCTTCTGGAGCCG 60 NA DesignRelaxed Rattus norvegicus 81 Tex14 ENSRNOG00000023698 ENSRNOT00000009077 3 1 1 80 10 74815397 74815418 AATTACCATCCACTGAAGAAGC 59 74815457 74817928 CAGACTCCATTCTGATTCTCC 58 NA Rattus norvegicus 81 Slc35b2 ENSRNOG00000019900 ENSRNOT00000026929 1 1 1 80 9 17825945 17825963 CAGAGACAGCAGAATCCAC 58 17824774 17825901 TCAGATAGGACACCTGGAG 58 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000011955 ENSRNOT00000015893 2 1 1 89 17 9234676 9234696 CGGAGGATAAGATCAATGCTC 59 9233699 9234625 CATTGGCCAGAGCATTAGC 59 NA Rattus norvegicus 81 Pigg ENSRNOG00000049895 ENSRNOT00000072386 2 1 1 80 14 2412746 2416315 AGGAAACAATGGTTCAGCAC 59 2412685 2412703 ACAATGTACGTGGCAACTG 59 NA Rattus norvegicus 81 LOC100359600 ENSRNOG00000030058 ENSRNOT00000040329 1 1 1 60 6 10643004 10643022 GATGACGCTACTTCTCCAC 58 10643044 10643064 CAGACCAATTTACAGTACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359600 ENSRNOG00000030058 ENSRNOT00000040329 2 1 1 60 6 10643009 10643028 CGCTACTTCTCCACTACAGG 60 10643046 10643069 CTCAACAGACCAATTTACAGTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpdu1 ENSRNOG00000012162 ENSRNOT00000017201 2 1 1 80 10 56262903 56262922 TGTTCCTGACACTACAGACG 60 56262746 56262861 GGAAAGCAACTCCTTTCACG 60 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518,ENSRNOT00000091264 1 2 2 102 6 26541889 26541907 CAACCTGAGACGTTCAGAC 58 26541634 26541736 CAGTTTACTTGAGAGTTTGACC 57 NA Rattus norvegicus 81 Smg7 ENSRNOG00000027962 ENSRNOT00000044235 3 1 1 80 13 70282757 70282778 GATACAGAAACCAGACTAGCCA 60 70281675 70282717 TGTAAGGCTGACCATTGGAG 60 NA Rattus norvegicus 81 Stat3 ENSRNOG00000019742 ENSRNOT00000026760 1 1 1 80 10 88808076 88808183 ACTTAATGAAGAGTGCCTTCG 59 88808016 88808035 CAGTCTTGATGACTAAGGGC 58 NA Rattus norvegicus 81 Stat3 ENSRNOG00000019742 ENSRNOT00000026760 3 1 1 80 10 88808074 88808180 TAATGAAGAGTGCCTTCGTG 58 88808013 88808033 CACCAGTCTTGATGACTAAGG 58 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 3 3 3 87 7 107198093 107203733 ACAGTTAAAGTGGTTGGATGG 59 107198026 107198045 GATTTGCTGTTCAACTGCTG 58 NA Rattus norvegicus 81 LOC501180 ENSRNOG00000018559 ENSRNOT00000025029 2 1 1 60 9 93445162 93445181 CTACCTGATGAAGTCCCACC 60 93445202 93445222 GGTCTACATCCTCTTCAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sncg ENSRNOG00000058006 ENSRNOT00000087150 2 1 1 224 16 10725387 10725690 ACAAAGTGTAACCTCGGTG 58 10722397 10722415 TAGTCTCCTCCACTCTTGG 57 NA DesignNoJunction Rattus norvegicus 81 Pgrmc2 ENSRNOG00000014051 ENSRNOT00000018796 1 1 1 63 2 127988903 127988921 TCGAGAGTGGGAAATGCAG 60 127987335 127987353 CCCTGGCTTTAGGAGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Trpm7 ENSRNOG00000057806 ENSRNOT00000077398 3 1 1 80 3 119264050 119264211 TACCATATTCTCCAAGGTTCCTG 60 119263992 119264012 TGCATTCTTCTACAGCAAACC 59 NA Rattus norvegicus 81 Pip4k2c ENSRNOG00000005138 ENSRNOT00000067774,ENSRNOT00000079327 2 2 2 80 7 70492494 70493465 TCATGATTACTTGGTGTCCCT 59 70492434 70492454 TCATAGGAGATAAGGAAGCGG 59 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029,ENSRNOT00000074720 1 2 2 80 1 83045520 83045543 CTGGAATCTACCACCTAAATATCC 58 83045579 83049138 TTAACAGAGGGTACACAAAGAC 58 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000087090 1 1 2 87 6 105395476 105395494 GGCCTTCTATCATCTTGGG 57 105395545 105397429 TATCCTGACCCTCACTGAG 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 2 2 2 80 9 27447842 27447860 CCTTCACTACTTCGATGGC 58 27442410 27447801 TGTTCTTCAAACTCTACTCCAG 58 NA Rattus norvegicus 81 Olr1273 ENSRNOG00000046225 ENSRNOT00000073329 1 1 1 60 2 115225481 115225504 CATTCTTCTCACTATTGTCTCCTC 59 115225522 115225541 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227,ENSRNOT00000066222 1 2 2 80 8 58384137 58384155 AAGAAGCTGAGCAGACAGG 60 58384196 58385355 CACAATCAATAGCTGAATGCCA 60 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 2 3 3 80 19 15222513 15223804 ATTCCAACGCTTATGGGCT 60 15223847 15223866 GTAGGACTTCCACAAGAGGG 60 NA Rattus norvegicus 81 LOC690326 ENSRNOG00000024508 ENSRNOT00000034403 2 1 1 81 4 165736783 165736801 CCAGAAAGGCCAGAAAGGA 60 165736845 165737683 TTGATCATTCTCCTGCTGGT 59 NA Rattus norvegicus 81 Rn60_1_1739.1 ENSRNOG00000051318 ENSRNOT00000076911 1 1 1 60 1 167654443 167654461 TGCTCCAGTATGACTCCAG 59 167654484 167654503 TTCCCATTCTCAGACTTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt10 ENSRNOG00000046053 ENSRNOT00000048236 1 1 1 84 X 17172097 17172115 TGGAGAAACTGAAGCTGGG 60 17172163 17213426 TCTGTTCATTAGGGCTCGC 60 NA InUTR Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 1 2 3 80 1 82898409 82898429 AAGTCCAACCTTGTTCTATGC 59 82898070 82898367 GATACTGAGGCTACCTCCC 58 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000007428 2 1 3 80 7 14568670 14568691 TCTTGGAGTCCAAGACTAAGTC 59 14568730 14569410 TTCCATGTTCATCCTTAGCCA 60 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 1 2 2 92 5 12141202 12143543 CTATAGAGGATCAGTTGACACAG 58 12141132 12141150 GTACTAGTGGTGCGAAGGA 59 NA Rattus norvegicus 81 Dusp9 ENSRNOG00000055185 ENSRNOT00000087962 2 1 1 90 X 157169925 157169943 TCCACTACAAGCAGATCCC 59 157169585 157169872 AAGGCCTCATCTATGAATGC 58 NA Rattus norvegicus 81 Cytip ENSRNOG00000004772 ENSRNOT00000006387 2 1 1 80 3 44166064 44166082 CACAGAAGGCTTCACTCAC 59 44163236 44166025 CCATTAAGAGTCTCTATCGTTAGC 59 NA Rattus norvegicus 81 Lrrk1 ENSRNOG00000012730 ENSRNOT00000016959 3 1 1 80 1 127177154 127177172 CGTCCTTCTTCTCATCCCA 59 127175040 127177111 CCACCGTGTAATTCCTTGAC 59 NA Rattus norvegicus 81 AC126960.1 ENSRNOG00000039860 ENSRNOT00000031118 1 1 1 80 4 26253506 26254144 GAACTTCTATCGTAACCTGCAC 59 26253447 26253465 TCCTGCTTCAGTTTGACCA 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 2 1 2 117 16 81231348 81233292 AGATATCAAGAGTGCATGAGGA 59 81226496 81226514 TGCCCTTCTTATCACAGGG 59 NA Rattus norvegicus 81 Hrsp12 ENSRNOG00000005437 ENSRNOT00000007430 3 1 1 101 7 73259360 73259379 ACTTTGGCACTGTCAATGAG 59 73256979 73258066 CAATTCGACTTCCTTTGGGT 59 NA Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 3 2 2 80 8 58097200 58097222 CTCTTATTCTACCAGTTAGAGGG 57 58095389 58097163 GAGATGAGGGAAATTACTCTGG 58 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 3 3 3 80 20 5110646 5111499 CTGGAACCTGATGAAGAGC 58 5110584 5110602 CAACCCATAGAGCATCTCG 58 NA Rattus norvegicus 81 Sgk2 ENSRNOG00000033573 ENSRNOT00000041688 3 1 1 80 3 159378947 159381298 CCAAGGAAGACTTTCTCGAC 58 159381341 159381359 TCAGCCTCTTGTGGTACAG 59 NA Rattus norvegicus 81 Capza2 ENSRNOG00000056207 ENSRNOT00000090451 1 1 1 80 4 44952877 44952898 ATTTGCACAGTATAACCTGGAC 59 44952935 44955240 CCATGTTCTGTTATCAAGACCTG 60 NA Rattus norvegicus 81 Frem2 ENSRNOG00000021670 ENSRNOT00000031487 1 1 1 80 2 142883425 142883444 GGAAACTCTTCTACAGGCAC 58 142883362 142883385 GATTGTCCTCGACTCTAAACAG 59 NA Rattus norvegicus 81 Mkrn1 ENSRNOG00000009280 ENSRNOT00000013124 1 1 1 80 4 67187877 67188628 TGAGAGCAAGATCATAAAGTCC 58 67187818 67187836 TCTTCCACCCAGTACTCAC 58 NA Rattus norvegicus 81 Ptdss1 ENSRNOG00000052289 ENSRNOT00000087143 3 1 1 82 7 71316340 71316358 CGAGCAGGTTAAATCCCTG 58 71316404 71319153 CGGCATACTCCATGATGTC 58 NA Rattus norvegicus 81 AABR07036505.1 ENSRNOG00000052647 ENSRNOT00000041732 1 1 1 80 12 45319938 45320512 TTTCTGTCTACATACAGAAGCC 58 45320640 45320663 GAAGTATGTGTACCTAGAGAAGAC 58 NA Rattus norvegicus 81 Eps8 ENSRNOG00000007047 ENSRNOT00000009328 2 1 1 80 4 171503074 171506069 AGTCCACAGAGCATTCCAG 59 171503012 171503030 GTCCTCTGTGGTACATGCT 59 NA Rattus norvegicus 81 Ict1 ENSRNOG00000032780 ENSRNOT00000045875 3 1 1 83 10 103961976 103962235 CTTCAGAGACTCAGGATTGAG 58 103962279 103962298 CCTCCTGCTTGTCTTTATGG 58 NA Rattus norvegicus 81 LOC684238 ENSRNOG00000021704 ENSRNOT00000071201 2 1 1 80 5 58812030 58812053 GACACCATCATCTATGAACTACTG 59 58812090 58815390 GGCAAAGTCATCTAACTGGTC 59 NA Rattus norvegicus 81 Ankrd66 ENSRNOG00000046426 ENSRNOT00000075670 3 1 1 86 9 20004365 20004383 AGAAAGGTCTCTGTGACCC 59 20004433 20008464 CCATTTGCCCTCTGATTGC 60 NA Rattus norvegicus 81 AABR07065923.1 ENSRNOG00000005826 ENSRNOT00000007683 2 1 1 60 6 146394487 146394505 CCTCTAGTGTCCTCTGCTG 59 146394529 146394547 TCGTTGGTTTCATGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam24a ENSRNOG00000026035 ENSRNOT00000036128 3 1 1 98 1 201914114 201914133 GTATCGCTAGCACTTTGCTG 60 201914194 201915022 CTTCCCTTGCGCATTTCAG 60 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 3 3 3 82 19 15419657 15421200 TTTCTTCAAAGGAGTGGGCT 60 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Vom2r67 ENSRNOG00000031928 ENSRNOT00000061889 3 1 1 81 14 1320562 1321495 GAACATTGGTTCCCTCCTC 58 1321539 1321558 CAGTCTGCTGTTTCTTTCTG 57 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000086413 2 1 2 81 20 5107849 5107869 AAATTCCATAATGAGGGCCTG 59 5107307 5107807 GCGAACCTTAACATCCTTCC 59 NA InUTR Rattus norvegicus 81 RGD1310212 ENSRNOG00000026582 ENSRNOT00000036473 1 1 1 60 7 15362566 15362586 TCCCTCTTCCTTAAATAGGCA 58 15362526 15362546 CAGTGATAATGTAGACGTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000014871,ENSRNOT00000087803 1 2 2 89 2 118987871 118987975 ACACGACTTGTGCTTTGTG 59 118987800 118987818 TCAGTGAGAGGCTCATCAC 59 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 2 2 2 80 1 83113463 83114889 CCCATGTCACAGAGAAAGTC 58 83114932 83114950 TGGTACGATCATCAAGGGA 58 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 1 2 2 80 10 70515041 70515061 CTCAGGACATACAAGCTATGG 58 70514123 70515002 TCTTCTTACCAATGCTTCTGAC 59 NA Rattus norvegicus 81 Pdgfrl ENSRNOG00000010832 ENSRNOT00000014623 3 1 1 81 16 54434109 54434128 ATGTAAGGGAAGCAAAGTGG 58 54398765 54434065 ATTCTGTTTCACGGTGAGG 58 NA Rattus norvegicus 81 Akap4 ENSRNOG00000002921 ENSRNOT00000003939 2 1 1 80 X 16302519 16306011 GTGGCACTACAAAGATGTCTG 59 16302459 16302479 TTGGGCTGTAAAGATCTACCT 59 NA Rattus norvegicus 81 Mir7b ENSRNOG00000049078 ENSRNOT00000071390 1 1 1 61 9 10812501 10812520 TGCTATGTGGAAGACTTGTG 58 10812459 10812477 CTGGCTGTGACTTGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mterfd2 ENSRNOG00000037376 ENSRNOT00000056558 1 1 1 80 9 100443965 100443983 AGTTGCTGAAACTGTCTGC 59 100442211 100443922 TCAGTTTCCCTTCTCCAAGG 59 NA Rattus norvegicus 81 Olr1421 ENSRNOG00000050694 ENSRNOT00000051126 2 1 1 60 10 44081517 44081539 GCTGTCTATAACTACATGCTACC 59 44081479 44081497 ACACCACCATGTTCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp19a1 ENSRNOG00000000196 ENSRNOT00000000212 3 1 1 80 8 58751238 58751256 TCATGTTGCTTCTCATCGC 59 58747722 58751195 CTCTGTCACCAACAACAGTG 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476,ENSRNOT00000067931 2 2 2 80 4 145719469 145719487 GATGAAGAACATCCTGGGC 58 145718166 145719425 TGGAACATCTTCTCACCCA 58 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 3 2 2 81 7 18416359 18416379 CACGTAGTATACAAGCGTTCC 59 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Mir30d ENSRNOG00000035611 ENSRNOT00000053734 3 1 1 60 7 109286522 109286542 GTCTGTGTCTGTAAACATCCC 59 109286482 109286500 TCTGACTGAAAGCTTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgarp ENSRNOG00000011923 ENSRNOT00000016475 3 1 1 81 2 140447808 140448440 GTGGATATTACACTTACAAGGC 57 140447748 140447767 TTTGTTTGTTCTTTCGGGTC 57 NA Rattus norvegicus 81 LOC100911713 ENSRNOG00000050660 ENSRNOT00000075612 1 1 1 99 9 20280302 20280320 CAAGATGCTGCAATTCGTG 58 20280382 20281057 AAACTTAAGGACACCTTCCC 58 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 3 2 2 80 8 76865996 76868094 AAGATGTGAGACGGCTTCC 60 76865934 76865955 GGCACTTCTTATTGGTGATCAG 60 NA Rattus norvegicus 81 Rn60_10_0700.7 ENSRNOG00000051259 ENSRNOT00000076413 1 1 1 60 10 71112671 71112691 CTTAAACAGCAACTCCCACTC 59 71112631 71112649 GTCATTGAGAGCAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0700.7 ENSRNOG00000051259 ENSRNOT00000076413 3 1 1 60 10 71112584 71112608 GGTATGACAATGAATACAGCTACAG 60 71112548 71112567 GAAACCATGTAGGCCATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sin3b ENSRNOG00000048622 ENSRNOT00000074814 3 1 1 81 16 18857663 18857683 TGGATACCGCATAGACATTCC 60 18852339 18857622 ATGGCTATGAGAGTTGTCCTG 60 NA Rattus norvegicus 81 Olr38-ps ENSRNOG00000055775 ENSRNOT00000083691 3 1 1 92 1 167580755 167580775 TGAGAACTAAGGAACGGCA 59 167580681 167580702 CTCTCACAATCTGTGACTTCTC 59 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000017096,ENSRNOT00000016801 2 2 2 80 7 143845724 143846357 TCCAAGGAAGCTGTAAGGA 58 143845662 143845680 CAGTTCGTAGTTGTCTGGT 57 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 3 2 2 80 3 14505745 14505764 AGGACAAGAAGATGGATGCT 59 14505805 14506021 GAACCTCTTCGATCACAAAGC 60 NA Rattus norvegicus 81 Pign ENSRNOG00000014866 ENSRNOT00000020752 2 1 1 80 13 25617186 25619719 TAATTCGGTGGGAATACTTCCT 59 25617127 25617146 ACTGCATTGGTAAACATGCT 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 2 2 3 125 2 208131870 208131888 CAATGAAGCTCTGGAGCTG 59 208132308 208134868 ATAAACTCGTGGTTAGTGGTC 58 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000019997 2 1 3 80 2 208133782 208134858 ACCTCCACCATCAAGAACC 59 208134900 208134920 GTAGTTCTGCATTGAGCTCTC 59 NA Rattus norvegicus 81 Btnl2 ENSRNOG00000028541 ENSRNOT00000060366 2 1 1 80 20 4143333 4143352 CCAGGCTACAGTCTATCTGG 59 4143394 4145007 CACTCTGAAGTCATCTGGGT 59 NA Rattus norvegicus 81 AABR07067037.1 ENSRNOG00000046593 ENSRNOT00000072794 1 1 1 80 9 27343942 27344517 CAAAGTGTCACTGTTTACAGC 58 27344558 27344577 GCAGGCATTACTTTCTTGGA 59 NA Rattus norvegicus 81 AABR07067037.1 ENSRNOG00000046593 ENSRNOT00000072794 2 1 1 80 9 27343941 27344517 TCAAAGTGTCACTGTTTACAGC 60 27344556 27344576 CAGGCATTACTTTCTTGGACC 59 NA Rattus norvegicus 81 Cbwd1 ENSRNOG00000015516 ENSRNOT00000021185 2 1 1 80 1 242854115 242854133 TCTGATGCAGAAGAAGGGC 60 242848833 242854071 ATAGAAGCCACTGCACCAG 60 NA Rattus norvegicus 81 Krtap2-4l ENSRNOG00000056967 ENSRNOT00000071705 2 1 1 137 10 87521535 87521553 GATCCTTCTCCTCCCAGAG 58 87521416 87521434 AGATGGGCCTAGTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem33 ENSRNOG00000002254 ENSRNOT00000003128 2 1 1 81 14 42552759 42555640 ACTCCTACCCAGTTACAATGAG 59 42552699 42552720 AGGACCTTCTTAGTGTATGTGG 59 NA Rattus norvegicus 81 Lat ENSRNOG00000017429 ENSRNOT00000023563 1 1 1 80 1 197769376 197769480 AGAATTCAGATGATGCCAACAG 59 197769238 197769257 CATCCTCATCTTCATCCACG 58 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 3 2 2 80 13 80764922 80765888 ATTCAGTTTCAGACAACCGTC 59 80764862 80764880 CTGAACATACACGTCCCAC 58 NA Rattus norvegicus 81 Rfxap ENSRNOG00000056028 ENSRNOT00000092028 1 1 1 86 2 144005310 144007078 AAACTGGAGGAAAGCACAG 58 144005242 144005260 TAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 LOC100910606 ENSRNOG00000048998 ENSRNOT00000072522 1 1 1 60 5 137497735 137497753 TACACATGGATTCACGCCT 59 137497774 137497795 AGAATGGATAAGATGCTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm8 ENSRNOG00000019035 ENSRNOT00000025879 2 1 1 80 9 95448770 95448791 CGAAGAACTGGAAGATTATCCT 58 95448832 95449464 TGGGCTTCTTCCTAAACGA 59 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000039553 1 1 2 81 20 4167171 4167189 ATGCGTCAGATGAAGGAGG 60 4167908 4168117 TCTTCCAGTCCTCTTTGTATAGTG 60 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000039553 3 1 2 84 20 4167207 4167904 AAGGACAGAGATCGGAGGA 59 4169834 4169852 GGAACAGTTCCTTCCTCCA 59 NA Rattus norvegicus 81 Mir423 ENSRNOG00000035537 ENSRNOT00000053660 1 1 1 82 10 63098363 63098381 AAGGAAGTTAGGCTGAGGG 59 63098427 63098445 TAGGAAGCAAGACTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lekr1 ENSRNOG00000031247 ENSRNOT00000051494 2 1 1 80 2 157510094 157510114 AAACTGGACTTCACTGAAAGG 59 157510153 157521683 AACATATCTATCTCTGCCAAGG 58 NA Rattus norvegicus 81 Atp6v1e2 ENSRNOG00000015566 ENSRNOT00000020845 2 1 1 60 6 10512028 10512048 CAATCTCATCTTGGAACTGCT 58 10511988 10512008 ATCCGACACGATTCTACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4g ENSRNOG00000014650 ENSRNOT00000019956 1 1 1 80 1 264746228 264746246 TACTAGCTTCGAGGAGGGA 59 264746288 264746453 AGGCCTCCATCAATGATAAGG 60 NA Rattus norvegicus 81 Morn5 ENSRNOG00000026111 ENSRNOT00000036495 3 1 1 80 3 15400309 15400328 AGGAAGTCACTTCATCACCC 60 15404390 15407187 ACTCATGTTCGTCATCATTGG 59 NA Rattus norvegicus 81 Slc20a1 ENSRNOG00000018567 ENSRNOT00000025294 2 1 1 80 3 121726459 121726607 CAGTGCTATGTTTGGTTCTG 57 121726650 121726668 ACAATACAATGGGTCCCAG 57 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000060181 3 1 2 86 7 117951207 117951225 ATGTCTGGATTCCGGTCAG 59 117951275 117953476 AAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Pfn1 ENSRNOG00000003975 ENSRNOT00000005370 1 1 1 81 10 57274089 57275474 TTCGTTAGCATTACGCCAG 58 57274026 57274044 CAAGTGTCAGCCCATTCAC 59 NA Rattus norvegicus 81 Ifngr2 ENSRNOG00000002032 ENSRNOT00000002779 1 1 1 80 11 31705052 31706862 CACTATGAGAATGTTACTGTTGGAC 60 31706899 31706918 GGAGAAGTGTATGACGAGGG 60 NA Rattus norvegicus 81 Pnliprp1 ENSRNOG00000017908 ENSRNOT00000024164 1 1 1 80 1 279868931 279870332 ATGTGCAAGAACATGTTCCA 58 279870373 279870393 TGTGTAGGTAGTCTGAGAACC 59 NA Rattus norvegicus 81 Pnliprp1 ENSRNOG00000017908 ENSRNOT00000024164 2 1 1 80 1 279868873 279868893 GACTCGGTTTATCATCCATGG 59 279868934 279870335 ACTTGGAACATGTTCTTGCA 58 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000048843 3 1 2 97 1 264774403 264775290 AGACCAAATGGGAGGTGTG 60 264775351 264775369 CTCACTACCCTTCTGGACC 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493,ENSRNOT00000013761,ENSRNOT00000067349,ENSRNOT00000051097,ENSRNOT00000067189,ENSRNOT00000079935 1 6 6 83 5 150140519 150148642 TCATACAGGTCCATGACTCC 59 150140455 150140476 AAGATCAACTCCATACATGGAC 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 3 2 2 83 7 15247725 15248595 TAAAGGAAGCCTGAGAACTCTG 60 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 3 2 2 84 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824941 43824960 TTCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Pwp1 ENSRNOG00000005350 ENSRNOT00000007549 1 1 1 80 7 23992520 23994053 CTATGACAAATCCGTGGCTC 59 23992459 23992477 TCGATCTGCCCACTAAACC 60 NA Rattus norvegicus 81 Cript ENSRNOG00000015215 ENSRNOT00000020534 1 1 1 87 6 10597653 10600314 AGAAAGCAAGGTTTGATCCA 58 10600364 10600382 TAATGAGAACCTGGCTGGT 58 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076179 2 1 2 60 1 134993401 134993421 AGCAAATGCGACTTTACACAG 60 134993441 134993461 GTTTCCGAGCTTCTGATTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf152 ENSRNOG00000014859 ENSRNOT00000019921 3 1 1 195 13 25191131 25260880 GACAGATTCAGAAATTAGCACG 58 25190957 25190976 ATATCTGACATTCCAGCAGG 57 NA InUTR Rattus norvegicus 81 Rab17 ENSRNOG00000052979 ENSRNOT00000079446 1 1 1 80 9 98120841 98121820 TATGACATCACTAGGAAGGATTCC 60 98120784 98120802 CTCTCCTGGATGGAACTCC 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 2 3 3 82 20 4532689 4532707 CTATCAGTGCCATCAAGGC 58 4532752 4533421 CTCTGGGTCCTTTAACTTCC 58 NA Rattus norvegicus 81 Ccdc184 ENSRNOG00000021945 ENSRNOT00000031157 1 1 1 99 7 139763108 139763126 AGATCATGACCAAGGACGG 59 139763189 139763207 ATACCGCCGTTATACTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002905.1 ENSRNOG00000047959 ENSRNOT00000072570 1 1 1 80 1 88688504 88689404 AGGACTCACACTGGAATACG 59 88688443 88688461 ATGAGCTTCAAGGGAGCAG 60 NA Rattus norvegicus 81 Pced1b ENSRNOG00000022807 ENSRNOT00000037874 1 1 1 80 7 138739127 138739145 CTCAGATCCCAGAGGACAC 59 138739188 138742246 GGTTCATTCCTACGTTTGCT 59 NA InUTR Rattus norvegicus 81 AABR07051578.1 ENSRNOG00000042846 ENSRNOT00000065927 3 1 1 92 3 17345526 17345745 TGGGTATCTGTTGGTACCTG 59 17345798 17345818 GCATCTCATAGTGACCTTCTC 58 NA Rattus norvegicus 81 Glipr1l2 ENSRNOG00000049053 ENSRNOT00000073180 1 1 1 80 7 54811051 54812116 GTAACTATGCACCAGGAGGA 59 54810990 54811010 TTTCTTCATTAGTGCACCGAG 59 NA Rattus norvegicus 81 Olr1666 ENSRNOG00000017868 ENSRNOT00000024040 2 1 1 60 19 27535353 27535371 GCTCTCAGCTAGTTCTCCT 58 27535311 27535329 AAACTCTCAGGTAGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spryd4 ENSRNOG00000003127 ENSRNOT00000004173 2 1 1 80 7 2623735 2623753 GTTGGAACTTGTACCGCTG 59 2623330 2623693 CCAGTTTGAAACTGATGCCTC 60 NA Rattus norvegicus 81 Gtdc1 ENSRNOG00000031038 ENSRNOT00000059679 2 1 1 80 3 29421420 29421440 CTATTTCCGAGTACTGTGCAC 59 29417254 29421379 GCTTCCAACATTGCTACTCC 59 NA Rattus norvegicus 81 Cebpzos ENSRNOG00000040303 ENSRNOT00000062031 2 1 1 88 6 1516262 1516874 CTCGAGCCAAGATTTCAGG 58 1517548 1517568 ACATTCCAGACTGTTCAATGG 59 NA Rattus norvegicus 81 Chchd5 ENSRNOG00000018491 ENSRNOT00000024942 1 1 1 89 3 121660595 121660613 TTAAGATGAGCATCGCTCG 58 121660747 121660765 CCTCAAAGGCTTCAAACGG 60 NA DesignNoJunction Rattus norvegicus 81 Arhgdib ENSRNOG00000005809 ENSRNOT00000007779 2 1 1 80 4 170914569 170917227 GGGATGAAAGTGGATAAAGCT 58 170914509 170914527 TACTGGAGTGAGGAACTCG 58 NA Rattus norvegicus 81 LOC100363068 ENSRNOG00000049446 ENSRNOT00000075091 1 1 1 80 14 6140812 6140830 TGGATCCTTCCCAGAAGAG 58 6140425 6140769 CCCAGTAATAGCCTACAGCA 59 NA Rattus norvegicus 81 Gart ENSRNOG00000028292 ENSRNOT00000032162 1 1 1 80 11 31787970 31787991 CATATTACTGGAGGTGGATTGC 59 31784982 31787935 GGTATAGGCATCTAAATCTACTCCA 60 NA Rattus norvegicus 81 Hoxc9 ENSRNOG00000016199 ENSRNOT00000021909 1 1 1 80 7 144596464 144596482 AAGCACAAAGAGGAGAAGG 57 144598284 144598302 CTTCTTCCTTGTGGAACGG 59 NA DesignNoJunction Rattus norvegicus 81 Adamts4 ENSRNOG00000003538 ENSRNOT00000004713 2 1 1 82 13 89626146 89628790 ACAATGGCTATGGACACTG 58 89628836 89628854 ATCATAGTCCTTGCCAGGA 58 NA Rattus norvegicus 81 Tmem174 ENSRNOG00000015472 ENSRNOT00000020879 3 1 1 89 2 28749629 28749647 AGACAATGCTGCGTTTGTG 60 28749378 28749396 TCTAGCTGGTCTGCATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Gls2 ENSRNOG00000031612 ENSRNOT00000018737 3 1 1 80 7 2621088 2621218 TTTGTCAAGGACAGGTGGG 60 2621262 2621280 CTGAAGCAGTTTGACCACC 59 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984,ENSRNOT00000080418 3 2 2 80 12 40643548 40647263 ACTCCAACCAGAAAGATACCT 59 40643488 40643509 CGATAAACTCTGGGATCTTCTC 58 NA Rattus norvegicus 81 Snx25 ENSRNOG00000011116 ENSRNOT00000014828 2 1 1 80 16 49350959 49357489 GAAAGACGTGTTCGACTACAG 59 49357531 49357549 TAGAGCTGCCCATCATCTC 59 NA Rattus norvegicus 81 LOC499796 ENSRNOG00000028112 ENSRNOT00000038906 3 1 1 80 3 36212514 36218474 GACACCATTGAGATATCCGTC 58 36218514 36218534 TCTTCTCTTTCTCCTTCTCCT 58 NA Rattus norvegicus 81 Il7 ENSRNOG00000011973 ENSRNOT00000016091 3 1 1 92 2 96471262 96472306 GATGATACAAAGGAAGCTGCT 59 96472357 96472378 ATGGTCATTGAATTCCTCACTG 59 NA Rattus norvegicus 81 Ssr3 ENSRNOG00000011148 ENSRNOT00000014912 2 1 1 81 2 156014441 156014460 ACACTCTGTTCCTGGTTCTG 60 156013408 156014400 GACAGAATGTAGTTCACTGTGG 59 NA Rattus norvegicus 81 RGD1565533 ENSRNOG00000036796 ENSRNOT00000055192 2 1 1 81 10 89922152 89922170 GCATCCTAAGGAGGTTGAG 57 89922215 89922766 TATCGCCTTGAATTCTGCC 58 NA Rattus norvegicus 81 Ppp1r16b ENSRNOG00000015614 ENSRNOT00000021133 1 1 1 80 3 155188944 155188962 CAAGAAGGTGTCCTTCGAG 58 155189003 155242070 AGGAAGTATCGTACTTCTTCAG 57 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 3 1 1 60 3 161297855 161297873 TGTGGTAGATGTGTTTGCC 58 161296548 161297832 CAAGCCATACTCCAGTTGGA 60 NA DesignNoJunction Rattus norvegicus 81 LOC100362981 ENSRNOG00000034226 ENSRNOT00000047211 1 1 1 114 8 33120934 33120952 CTTGCTCAAGTGGCTTCTC 59 33104775 33105690 GATGAGGGACCAGTAAATGTG 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129,ENSRNOT00000060832 3 2 2 81 20 5132792 5133050 ACATTCAAGACTCCGGAGC 60 5133095 5133113 CTCTGTCCATGACCAGGAG 59 NA Rattus norvegicus 81 Rn60_10_0876.2 ENSRNOG00000026794 ENSRNOT00000036420 2 1 1 60 10 87792802 87792822 CCAATAAGAGCACAGCTATGG 59 87792762 87792782 CAGACAGTATAGCCCTGTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mov10 ENSRNOG00000012946 ENSRNOT00000018061 1 1 1 80 2 207279532 207280349 ACATCAAAGACTTGAAGGTGG 59 207279472 207279490 TTCGGACGGTAGAGATGAG 58 NA Rattus norvegicus 81 Htatsf1 ENSRNOG00000027761 ENSRNOT00000065636 1 1 1 80 X 159525247 159526051 CTCCTTCTGTTTGATAGACACC 59 159526087 159526110 CTGAATACAATTATCAGCCTCCTC 59 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558,ENSRNOT00000080934 1 2 2 80 19 24393291 24393310 GATTTGAACAAGACCGGTCC 59 24393351 24394454 CATCCAGATCACGTTTCAGAG 59 NA Rattus norvegicus 81 Coro1b ENSRNOG00000021828 ENSRNOT00000029829 2 1 1 80 1 219398787 219399123 CTCTAAACAAGACAGGCCG 58 219399165 219399185 ACCAGTCAATATCCAGAACAG 58 NA Rattus norvegicus 81 Il21 ENSRNOG00000017376 ENSRNOT00000023348 3 1 1 81 2 123972259 123972281 GATCACCTTCTGATTAGACTTCG 59 123972085 123972221 GTTCAGGATCCAAGTCATTCTC 59 NA Rattus norvegicus 81 Mecom ENSRNOG00000012645 ENSRNOT00000068381 3 1 1 80 2 117402375 117402396 AATCCCTGAGGATGACTATGAG 59 117401487 117402337 TCTTCCTCTTTATACCTCACGG 59 NA Rattus norvegicus 81 RGD1559955 ENSRNOG00000032765 ENSRNOT00000046179 3 1 1 60 9 106914143 106914162 CTGATGAAGCGGATTCAGAG 59 106914102 106914122 CTTCTTCCTGCAACTTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1351 ENSRNOG00000032545 ENSRNOT00000049910 3 1 1 60 9 99763821 99763842 GTTTGTGTTGTTGGGATTTAGG 59 99763863 99763881 GAAGACGGCAAAGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmxl2 ENSRNOG00000009170 ENSRNOT00000066197 1 1 1 80 8 59031778 59031797 GACACATTTCTCACCATGCC 60 59025863 59031737 CATTTGGAATATCTGTGGCGG 60 NA Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874,ENSRNOT00000080538 1 2 2 80 X 158351240 158353813 ATCCATGTGCTCAGTGACC 60 158353857 158353875 GCTCATAACTGTCGCACTG 59 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000050760 ENSRNOT00000073192 3 1 1 80 5 64569537 64569555 GCCCTTTCATTTCAGAGGG 59 64569598 64572312 GTGGTAAACCTGATCCAGAC 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445,ENSRNOT00000071516 2 2 2 80 X 159190753 159194576 CAACAGACCAAGCATGACC 59 159190691 159190712 GCAGAAGACTTTAGCTCTTCAC 59 NA Rattus norvegicus 81 Fcrl6 ENSRNOG00000000055 ENSRNOT00000000059 2 1 1 80 13 90989183 90992334 TTCTACTGCTCTGTGTTTCCA 59 90988522 90988542 TCTCTGAAGAGTTGAGACGAC 59 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208,ENSRNOT00000035915 2 2 2 82 16 9607725 9607743 ACTTGGCAACTGTCTTTGG 59 9607789 9609871 AACCAAAGATGTGCCTTCC 58 NA Rattus norvegicus 81 Cdk5r2 ENSRNOG00000037793 ENSRNOT00000057368 3 1 1 123 9 82121025 82121043 CAAGACCTCAAGAACGAGG 58 82121130 82121148 TAGTCCAATGCTTGGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1264 ENSRNOG00000047687 ENSRNOT00000073036 1 1 1 60 2 35285964 35285986 GAATATACAGAGACCCATTTCCC 59 35286005 35286024 CCGTGATAACATAGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000066001,ENSRNOT00000086962 1 2 2 92 5 62141129 62141147 CTCTATCAGGGTGTGGGAC 59 62139562 62139580 ATCTGCTGTCCCATCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp39a1 ENSRNOG00000010519 ENSRNOT00000014051 2 1 1 80 9 19848958 19858560 CCAATGCTGCTCCTATTGC 59 19848896 19848917 TGCTTTCTACAATTGTCCTGTG 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 1 2 2 80 16 9650718 9650739 CCTACCTTCTCTATCAAATGCT 58 9640821 9650678 TACTAGGCTTTAAGTCCCGA 58 NA Rattus norvegicus 81 Ube2g1 ENSRNOG00000010041 ENSRNOT00000013486 1 1 1 83 10 59229949 59229970 TTCAGCAGGTTTAATAGACGAC 59 59230010 59239901 CCACCTTCATAAAGTGTATCTGG 59 NA Rattus norvegicus 81 Klk5l ENSRNOG00000045980 ENSRNOT00000074179 1 1 1 84 1 100047978 100048000 AGGTGGCTATGTATCACTATGAC 60 100048044 100055989 TTATGCGAGGGAGAAGTGC 60 NA Rattus norvegicus 81 Klk5l ENSRNOG00000045980 ENSRNOT00000074179 2 1 1 105 1 100047957 100047975 AGAGACATTCCCAACCCTG 59 100048044 100055989 TTATGCGAGGGAGAAGTGC 60 NA Rattus norvegicus 81 Acap1 ENSRNOG00000015674 ENSRNOT00000021357 3 1 1 80 10 56501226 56501246 CGAGCATTAGATTATGCCCTG 59 56500914 56501044 CAAACGCAGTATGAACTCCA 59 NA Rattus norvegicus 81 Pnck ENSRNOG00000058317 ENSRNOT00000090795 1 1 1 80 X 157153400 157153418 CTTCATTCGGCACCTTCTG 59 157153462 157153551 CCAGAGATCCAGAGATGCT 58 NA Rattus norvegicus 81 Kcna2 ENSRNOG00000018285 ENSRNOT00000050149 3 1 1 263 2 209841191 209841209 GAAGAGAACCTCAGGCTCC 60 209841857 209841876 TCATAGGTGTCTTGAGGGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cdh19 ENSRNOG00000029841 ENSRNOT00000044628 1 1 1 80 13 32424114 32424133 TGTCAATGACAATGAACCCA 58 32408505 32424073 ACAAATGTTCCTTCTGGAGAC 58 NA Rattus norvegicus 81 Cdh19 ENSRNOG00000029841 ENSRNOT00000044628 3 1 1 80 13 32363974 32363992 TAACGACCATGCTCCTGAG 59 32352173 32363936 GTCTGAATTATCTCACCAGATTCAG 60 NA Rattus norvegicus 81 Wfdc10 ENSRNOG00000026067 ENSRNOT00000036020 1 1 1 88 3 161121832 161122738 ATATGAAGTCCAAAGTCGCTC 58 161122788 161122806 CTTGGTCCGATTCACAGTG 59 NA Rattus norvegicus 81 Rab33b ENSRNOG00000013035 ENSRNOT00000017396 2 1 1 80 2 140542258 140549526 GGAGAACGCATTAAGATCCAG 59 140549568 140549586 CCTGTAGTAGTGCTGGACC 59 NA Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 2 2 2 80 10 94593640 94593659 ATCTGCGCAAATTCAGAACC 60 94592576 94593600 GGTAGTGGTGTCTCTTATTCCT 59 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 2 2 2 80 8 82331820 82331840 CACATAGAAGACGAAGTGGAC 59 82330355 82331778 ATCGTGGTACCTTTCCCAG 59 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095,ENSRNOT00000042077 2 2 2 80 19 21566937 21571200 GTGGTGAGAAAGGGAAAGG 58 21571242 21571262 CCCTAGAAGAGCAGAAATGAG 58 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000047302 ENSRNOT00000061556 1 1 1 80 14 3321705 3321724 AGTTACTTTGCTGCAATGCT 59 3313160 3321666 CACATGGGTTATACCTTGAAGAG 59 NA Rattus norvegicus 81 Vom1r106 ENSRNOG00000043367 ENSRNOT00000064298 2 1 1 60 7 17957435 17957456 AACATCAATCACCTCACTTCTC 59 17957477 17957495 GACTCAGAAGAACGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r106 ENSRNOG00000043367 ENSRNOT00000064298 3 1 1 60 7 17957436 17957456 ACATCAATCACCTCACTTCTC 58 17957477 17957496 TGACTCAGAAGAACGAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap97 ENSRNOG00000032192 ENSRNOT00000045721 3 1 1 80 16 49282993 49283015 GTTGTAAGACTGATCGATCAGTG 59 49280354 49282954 TGCTGCATTGTATATTCGGG 59 NA Rattus norvegicus 81 Tceal5 ENSRNOG00000046280 ENSRNOT00000073529 1 1 1 60 X 106747239 106747257 GAAGGGCAGAAGATGAAGG 58 106747197 106747217 TCTGACTTGTCTTCATCTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361645 ENSRNOG00000031951 ENSRNOT00000051344 3 1 1 80 3 46187510 46187529 CCTCATGTTCTCTATGTGCA 57 46187569 46192978 GTACGTTGTGAGAAAGTTTCAG 58 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076211 2 1 3 60 20 47159117 47159135 GGATTCATGGCTAAGTCGT 57 47159075 47159093 CCTCTTGGCTGATTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562485 ENSRNOG00000028847 ENSRNOT00000040332 3 1 1 60 X 96459911 96459932 CAGGAAATGGAGAAAGACAAGG 59 96459872 96459890 TAGGAGAAGTGGAAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp18 ENSRNOG00000024945 ENSRNOT00000005516 1 1 1 80 14 84153367 84153386 GGTTAACTCTCCCATGGGAC 60 84153428 84153550 CCATCTGGTGTACTCAGTGG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000077048,ENSRNOT00000082010 2 3 6 80 10 89216903 89217030 AACTACAAACGCTGTTTGGAG 60 89216843 89216861 CAACTCCTTCAGCTCCCTC 60 NA Rattus norvegicus 81 Spns2 ENSRNOG00000057040 ENSRNOT00000078272 1 1 1 80 10 59023115 59034528 TGCAGTCAGTGTTCATCTG 58 59023053 59023072 TCACCTTTCTATTGAAGCGA 57 NA Rattus norvegicus 81 Hipk4 ENSRNOG00000020835 ENSRNOT00000028266 1 1 1 80 1 84328819 84335242 CTTCAGGGTAAAGGTGATCG 58 84335285 84335303 GACTGGATGTAAGGCTCCT 59 NA Rattus norvegicus 81 Sage1 ENSRNOG00000048059 ENSRNOT00000073396 3 1 1 104 X 158925582 158925600 GAAGGAGAAGCCATGAGTC 58 158923908 158925514 GACAATAGCACCTTCTCCC 58 NA Rattus norvegicus 81 Olr81 ENSRNOG00000048540 ENSRNOT00000043806 2 1 1 60 1 168294581 168294602 CTCTATTTGGTCATTCCTCCCT 59 168294623 168294641 TCTGCTTTGTTCTCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk5l ENSRNOG00000046267 ENSRNOT00000073513 3 1 1 118 1 99363108 99371053 AATGAGCACTTCTCCCTCG 60 99371135 99371153 TGTTGTAGAGTGGGTGTGG 59 NA Rattus norvegicus 81 Casp3 ENSRNOG00000010475 ENSRNOT00000014095 3 1 1 80 16 48848240 48848258 ACGATGATATGGCATGCCA 60 48846800 48848196 AGGAATAGTAACCGGGTGC 59 NA Rattus norvegicus 81 Igfbpl1 ENSRNOG00000011320 ENSRNOT00000015270 2 1 1 80 5 61400250 61400958 CTGGAAGAAGGTCAAGCAC 59 61400188 61400207 TGGACAGCTATATTGACGTG 58 NA Rattus norvegicus 81 Edem2 ENSRNOG00000019299 ENSRNOT00000026120 3 1 1 81 3 151239094 151241004 TGGTCTTCAGAGCCTTATTGG 60 151239033 151239052 CCCAAACTGCTTCCATACAG 59 NA Rattus norvegicus 81 Nudc ENSRNOG00000051720 ENSRNOT00000079380 1 1 1 80 5 151763219 151763238 AACACCTTCTTCAGCTTCCT 59 151758091 151763176 TGTGATGAGCTTCTCTGCC 60 NA Rattus norvegicus 81 Fadd ENSRNOG00000047035 ENSRNOT00000075089 3 1 1 217 1 217748432 217748450 AGTAAACGAAAGCTGGAGC 58 217746543 217746561 ACAATGTCAAATGCCACCC 59 NA DesignNoJunction Rattus norvegicus 81 Cmtm7 ENSRNOG00000010986 ENSRNOT00000014861 1 1 1 90 8 122820619 122820637 ATTTAATCGGCACCCTGCT 60 122816441 122820565 AGGAACCCAAAGATCGCTC 60 NA Rattus norvegicus 81 Myh10 ENSRNOG00000002886 ENSRNOT00000065895 3 1 1 80 10 55361835 55361853 CAAGTTTCAGAAACCACGG 57 55361897 55362684 GCCTTATAGTCCACCTTCC 57 NA Rattus norvegicus 81 Rnft2 ENSRNOG00000001124 ENSRNOT00000001486 2 1 1 80 12 43943873 43949229 ACATTCCACCTGAAAGAAGTC 58 43949270 43949289 TCAGGCTCTCAAATACACCA 59 NA Rattus norvegicus 81 LOC102547078 ENSRNOG00000047740 ENSRNOT00000057007 2 1 1 84 3 81884041 81886453 CACCAGCTATGATGAAGATGAG 59 81883978 81883996 CTCTTCCTCTGGAGAACGT 59 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 3 2 2 82 3 147109080 147109100 AGCAGAAGGAGGTTTGTATCC 60 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Arl6ip6 ENSRNOG00000005074 ENSRNOT00000006774 1 1 1 80 3 38753186 38766890 CTAGGTTCAAGAAACTGACTGG 59 38766931 38766949 TGAGAGCAGCTACAACACC 60 NA Rattus norvegicus 81 Rbbp6 ENSRNOG00000012806 ENSRNOT00000035770 2 1 1 80 1 192948627 192951460 CCGACTATAGACGCAGAGG 59 192951504 192951522 TGAAGATGACGATGGCTCC 60 NA Rattus norvegicus 81 Rad17 ENSRNOG00000018353 ENSRNOT00000024801 2 1 1 81 2 30659816 30662966 TCTACAAAGGTAACAGACTGGG 60 30659756 30659774 ATGAAACGGTGATGGTGGT 60 NA Rattus norvegicus 81 AABR07054718.1 ENSRNOG00000050384 ENSRNOT00000072043 2 1 1 80 3 167579801 167579822 ATCCTGCTCAGAAGAATCTCTG 60 167579860 167580084 CTTCCCAAATGTAGCCTATAGC 59 NA Rattus norvegicus 81 Vnn3 ENSRNOG00000039865 ENSRNOT00000021896 1 1 1 80 1 22656762 22660828 AGACCCTAAGAGGTTTGGC 59 22656700 22656723 GCCACAATATAGATAGAGTTCTCC 59 NA Rattus norvegicus 81 Rgs7bp ENSRNOG00000013389 ENSRNOT00000018058 2 1 1 84 2 35077584 35086868 AAATCAAGATGACAGCAGCC 59 35077519 35077538 ACAACATAACCCGAAGAACC 58 NA Rattus norvegicus 81 Utp23 ENSRNOG00000004387 ENSRNOT00000005828 3 1 1 80 7 91387940 91387961 TCTGAATGTCTCCTGTCTATGG 59 91387998 91389072 CACAGATAAGTTCTGATCCTGTG 59 NA Rattus norvegicus 81 Hfm1 ENSRNOG00000023299 ENSRNOT00000033794 3 1 1 80 14 3882455 3886443 GGTGAAACTGAAAGCTTTCC 58 3886484 3886504 TGGAATTTCTGAGATCAGTGG 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964,ENSRNOT00000090001 2 2 2 80 7 70767896 70770571 AGAACCAGATGAGAGTTCCA 58 70770613 70770632 GGACCCTTTGATATTCCTCC 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964,ENSRNOT00000090001 3 2 2 80 7 70767896 70770571 AGAACCAGATGAGAGTTCCA 58 70770612 70770632 GGACCCTTTGATATTCCTCCT 59 NA Rattus norvegicus 81 Cib2 ENSRNOG00000059834 ENSRNOT00000078571 2 1 1 80 8 59124318 59126692 CCTTCAAGATCTATGACTTCAACAC 60 59124262 59124282 ACTTAGTAAGTCTGGCCAGTG 60 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112,ENSRNOT00000082408 3 4 4 81 9 47023241 47024026 GGTATAAGAACTGTAAACCTCTGC 59 47024065 47024084 GCCACATTCATCACCATCAG 59 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 1 2 2 80 8 61722492 61722513 AACAGATATGGAGATGTACCCT 58 61722552 61725550 GTAATCTGTCTGAGTGTGACC 58 NA Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000066758 3 1 2 116 10 87721757 87721775 CTGCATTTCTAGCTGCTGC 60 87695182 87695201 CTAGAAATGCAACAGCTGGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000078382 1 1 2 133 20 5244298 5244316 ATGAGCAGAAGTCAGGAGG 59 5242916 5242934 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000078382 3 1 2 135 20 5244300 5244318 GCATGAGCAGAAGTCAGGA 60 5242916 5242934 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Bbs12 ENSRNOG00000007510 ENSRNOT00000009898 2 1 1 60 2 124054769 124054788 GCTGTTGAAGATTGTCTCCA 58 124054808 124054829 CTGACATCACTGACACTATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr886 ENSRNOG00000029097 ENSRNOT00000051699 1 1 1 60 7 5818099 5818117 TTTGTTGTGATGCAGCTCC 59 5818057 5818078 TGTTCTAACAACCATGTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055506.1 ENSRNOG00000046725 ENSRNOT00000073906 3 1 1 81 7 4518848 4518867 TTTCTTCTGCGATGCATCTC 59 4518910 4518930 TGCACAAATAATCACCAGCT 58 NA Rattus norvegicus 81 Olr120 ENSRNOG00000049485 ENSRNOT00000046685 2 1 1 60 1 168802977 168802995 CTTTGACTGCTACATTGCC 57 168802935 168802954 GTCATTGGTTAGGATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ulk1 ENSRNOG00000037505 ENSRNOT00000056790 2 1 1 80 12 51922622 51922852 GTCAAGATTGCTGACTTTGGA 59 51922892 51922912 GTACATAGGAGAGCCACAGAG 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 2 2 2 80 10 89241155 89241175 ACTGTCACAGAGATCGATGAG 59 89241216 89242317 GAGCGTGACATACTGATTCC 59 NA Rattus norvegicus 81 Pex5l ENSRNOG00000011211 ENSRNOT00000015200 1 1 1 80 2 119337762 119374445 AGCAGTAGAGTCAGATACGG 59 119337701 119337719 TCCGATATCCAGTTCCTCC 58 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 1 2 2 80 8 132030093 132030743 CAAAGCAGATGAAGAACCAC 57 132030032 132030051 CACTTCTCATCTGAGGAACG 58 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000007870 3 1 2 80 13 111971477 111972198 TTCAGACCAGAAATGCTCCA 59 111971416 111971437 ATGATATGCCATTTCTCTTCCG 59 NA Rattus norvegicus 81 Olr378 ENSRNOG00000031224 ENSRNOT00000044719 1 1 1 60 1 230664779 230664800 TGCCTTAGTCATACTCATTTCC 58 230664740 230664761 AGACTTCATCTTTATGACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC317471 ENSRNOG00000025637 ENSRNOT00000037047 1 1 1 60 X 29521048 29521066 GCTGATTATTTGCCCTGGA 58 29521089 29521108 GGTATGATTGTGGTGGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P3h4 ENSRNOG00000015787 ENSRNOT00000021322 2 1 1 80 10 88321959 88321979 TGGTATATTACCGCTTCCACC 60 88321368 88321917 GGTAGAGCACAGCTTCCTC 60 NA Rattus norvegicus 81 Cck ENSRNOG00000019321 ENSRNOT00000026159 1 1 1 91 8 130125942 130127009 ATCCGAAGATATGAAGTGCG 58 130125870 130125888 CTTCTACAGGGACTACCGG 59 NA InUTR Rattus norvegicus 81 Olr950 ENSRNOG00000032325 ENSRNOT00000051053 3 1 1 60 7 7617332 7617350 TCTTCGCCTCAAGATTCCA 59 7617290 7617308 TGCCATTTCCAAGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap27 ENSRNOG00000028569 ENSRNOT00000038836 2 1 1 80 10 91426371 91426575 CAAGAGCAGTGGGTAAGGT 59 91426309 91426327 TTCCCACTGAACAGAGGAG 59 NA Rattus norvegicus 81 AABR07067459.1 ENSRNOG00000061227 ENSRNOT00000086086 1 1 1 73 9 47065012 47065030 ATCCACCCTGATGCTTTCC 60 47062550 47062568 CTTGTGATGCTGGCAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr137 ENSRNOG00000049544 ENSRNOT00000052078 2 1 1 60 1 169153536 169153554 CCTCACTCTCACCACACTC 59 169153576 169153596 GATTTCCCGAATGTTGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563947 ENSRNOG00000003688 ENSRNOT00000004893 2 1 1 60 X 25737755 25737774 TTGCATGTATTGAAAGCCAC 57 25737797 25737815 GATCTCCAGCATCCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 2 2 2 87 8 128616390 128616856 ACTCAAGGCTGAACAAGGA 59 128616321 128616339 ATGTTGAACACCTCCAGCT 59 NA Rattus norvegicus 81 AABR07012054.1 ENSRNOG00000049530 ENSRNOT00000074187 1 1 1 75 2 184230683 184230701 TTCATCCATTCACCACAGC 58 184230740 184230758 ACATTCCTTGGGACAGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000073603 2 1 2 90 10 59923350 59923368 TCTGGATTCCCATCTCCAC 59 59923422 59934347 CTTGGGCATTGTGACAGAG 59 NA Rattus norvegicus 81 Arhgap33 ENSRNOG00000024677 ENSRNOT00000034001 2 1 1 80 1 88981877 88981980 CCGTGGAAAGGAGGAAGAG 60 88981815 88981835 CCAGAGCAAAGAATGTCTTCC 59 NA Rattus norvegicus 81 RGD1310553 ENSRNOG00000016447 ENSRNOT00000022601 1 1 1 107 9 49903188 49905003 TGGAGCAGAAGAACATAGCT 59 49905073 49905091 TTGGCAAATCCCTCTGAGG 60 NA Rattus norvegicus 81 LOC367485 ENSRNOG00000048976 ENSRNOT00000075616 3 1 1 80 1 24904920 24905081 CAGTGAAAGGATCCCAGGA 59 24905125 24905143 GTTGAGGATTGTCGTCAGC 59 NA Rattus norvegicus 81 Olr892 ENSRNOG00000029961 ENSRNOT00000046001 2 1 1 60 7 5106142 5106162 CTAAAGATCTCCTGCTCAGAC 58 5106102 5106122 AGACAGCCACAAGTATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909836 ENSRNOG00000045621 ENSRNOT00000070868 1 1 1 86 12 47031895 47036818 GAGGACAGATGTCTCTACCTG 59 47036864 47036884 CACAACGTGATTTGAGTTCTG 58 NA Rattus norvegicus 81 AABR07037798.1 ENSRNOG00000003342 ENSRNOT00000004451 2 1 1 63 X 31012952 31012970 GAGATCAGCAAGAGGAAGC 58 31012890 31012908 GATACTGACCCAGGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 FAM187A ENSRNOG00000002918 ENSRNOT00000003892 2 1 1 60 10 90990096 90990115 TGTCTTCGTTACCATTCACC 58 90990138 90990156 GAAATTGGGACAACAGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr10 ENSRNOG00000020275 ENSRNOT00000027458 1 1 1 138 10 89088242 89088956 CACAGAACAGGTCTCCTGG 60 89088122 89088140 CACCATCAGGGAGACACTG 60 NA Rattus norvegicus 81 Sirt3 ENSRNOG00000013828 ENSRNOT00000018861 1 1 1 84 1 213626920 213627015 ATCCCAGACTTCAGATCCC 58 213626854 213626872 GTTCAAAGATGGCCTCAGG 59 NA Rattus norvegicus 81 Xrcc6bp1 ENSRNOG00000045629 ENSRNOT00000074743 2 1 1 81 7 70198452 70198470 TCCTTTCCAGCCTCTTCAC 59 70196552 70198408 AGCTTGACATACGGATTCGT 60 NA Rattus norvegicus 81 Xrcc6bp1 ENSRNOG00000045629 ENSRNOT00000074743 3 1 1 82 7 70198452 70198470 TCCTTTCCAGCCTCTTCAC 59 70196551 70198407 AAGCTTGACATACGGATTCG 59 NA Rattus norvegicus 81 Clcf1 ENSRNOG00000018752 ENSRNOT00000025342 3 1 1 104 1 219469288 219471030 GGACCTACCTGAACTACCTG 59 219471097 219471115 ACACTTCCAAGTTGACCGT 60 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000041515 1 1 2 80 X 31710478 31710497 GGAACACCTCTATATGTGGC 58 31708580 31710435 ATTCACAGATGCTCCTGAC 57 NA Rattus norvegicus 81 Fanci ENSRNOG00000016689 ENSRNOT00000050759 3 1 1 80 1 141166648 141166667 ATAAGAGTCCTGTCACCCTG 59 141166704 141166809 TCTCTACATCTTGATCTATGTCTCC 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000045130 2 2 3 80 7 66763084 66763102 AGAAGCTTTAACGTCGCTC 58 66763145 66765400 AGCTGTAGTCTCTGGTTCTG 59 NA Rattus norvegicus 81 Prc1 ENSRNOG00000013057 ENSRNOT00000017532 1 1 1 80 1 142104352 142105028 GTACGCAAGATGAACACTACC 59 142105068 142105088 GTACACTGATCCACCAAAGAC 59 NA Rattus norvegicus 81 Taok1 ENSRNOG00000015692 ENSRNOT00000021368 3 1 1 80 10 62579451 62580951 GGAACACCATATTGGATGGC 59 62580992 62581012 AGACCATACATCAACTTTGCC 59 NA Rattus norvegicus 81 Cox5a ENSRNOG00000018816 ENSRNOT00000025525 2 1 1 81 8 62306234 62306253 GATGAGGAGTTTGATGCTCG 59 62306294 62307464 TATTCATCCCTTTACGCAACTC 59 NA Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 3 2 2 80 14 89199536 89200240 ACCCTCTACTACCTTCTGAC 58 89199475 89199494 GTTTCCTTATGTCGATGTGC 57 NA Rattus norvegicus 81 LOC689840 ENSRNOG00000031522 ENSRNOT00000043392 2 1 1 80 8 14815541 14815559 CCCAAAGCACTTCAGACAG 59 14815599 14816584 AGCCTTATGTAGAAGCTTAGGAG 60 NA Rattus norvegicus 81 LOC100912399 ENSRNOG00000050275 ENSRNOT00000065473 1 1 1 80 2 43945340 43945718 ATACTTAAAGCTGGATCCATCG 58 43945281 43945301 GTTTGATTCAGCTTGGTTTCC 58 NA Rattus norvegicus 81 LOC100912399 ENSRNOG00000050275 ENSRNOT00000065473 3 1 1 80 2 43942303 43943233 TGAAACAGGTGACCTACGT 59 43942241 43942260 TCATCCTGATCTCTTCCCTC 58 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 2 3 3 80 10 82245418 82245439 CTGTCAGCAATGTCTTACAAGG 60 82244763 82245378 GAGGAATGTGTTGCTTCGTC 60 NA Rattus norvegicus 81 RGD1306941 ENSRNOG00000010185 ENSRNOT00000013511 2 1 1 95 9 64066827 64066845 CAATGAACTGCTCCTGCTG 59 64066903 64072572 TCATGGTAATTCTGCACGTC 58 NA Rattus norvegicus 81 Als2cl ENSRNOG00000033921 ENSRNOT00000046745 2 1 1 80 8 119168531 119169185 CTCTTAGGAAAGGGCAAGG 58 119169228 119169247 CAGTCCTTTATCTGTCCCAC 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 2 2 4 80 14 84287259 84287354 CTGACCAAGATCAACTACGG 58 84287397 84287415 ATTGTGCTCATACTGTGGC 58 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 1 3 3 80 2 216341298 216341319 AGAAGTGACCATTAATCCAGAC 58 216341132 216341258 ACCATGTTCCTGATTTGACG 59 NA Rattus norvegicus 81 LOC684208 ENSRNOG00000048369 ENSRNOT00000074214 3 1 1 60 1 167857921 167857939 TCTATCTCCTGCTACCACC 58 167857963 167857981 ATCTCCTTGGTCTTTGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpre ENSRNOG00000015717 ENSRNOT00000021359 2 1 1 80 1 207954905 207955162 AGCCTACTTCTTCAGGTTCAG 60 207955204 207955222 TCTAGGATCCCGTTAGGCA 60 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 1 1 1 60 1 72420435 72420453 AAAGCTAGGTTCCGGTTCC 60 72420477 72420952 TTGACCTCCTTGTCGTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Mir26a ENSRNOG00000035582 ENSRNOT00000053705 2 1 1 60 8 127714455 127714476 GTTCAAGTAATCCAGGATAGGC 59 127714495 127714515 GTGCAAGTAACCAAGAATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pstk ENSRNOG00000020605 ENSRNOT00000027967 3 1 1 83 1 201957294 201957317 CATCCTTCATAAAGCTGATGAGAC 60 201957353 201960360 GTAGGAGGTATTTGTTCATCTTTGG 60 NA Rattus norvegicus 81 Id3 ENSRNOG00000026124 ENSRNOT00000035788 1 1 1 62 5 154489925 154490058 CATCTCCCGATCCAGACAG 59 154490084 154490102 ACTCCTCTTGTCCTTGGAG 58 NA DesignRelaxed Rattus norvegicus 81 Eps8l1 ENSRNOG00000027942 ENSRNOT00000032306 1 1 1 80 1 72937450 72938260 CCAGTATCATGTCAATCACCT 58 72937390 72937409 TTTCTGGAAGCATCTTCCAC 58 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452,ENSRNOT00000073469 1 2 2 80 2 44357645 44360312 ATGACTATGGAGGAAGTTCCC 59 44357585 44357605 CACTTTCCTGTCTCCATTCAC 59 NA Rattus norvegicus 81 Pold4 ENSRNOG00000018765 ENSRNOT00000025507 2 1 1 80 1 219482152 219482363 TTGCACAGGTATCACAAGG 58 219482407 219482425 ACTTGGTACACCTCTACGG 58 NA Rattus norvegicus 81 Ano10 ENSRNOG00000000219 ENSRNOT00000035371 1 1 1 80 8 130896896 130898617 AGCCCATAGATAGCATTCGT 59 130896835 130896855 AGGCAAAGGTAAAGTACTCCA 59 NA Rattus norvegicus 81 Fndc7 ENSRNOG00000020421 ENSRNOT00000027690 3 1 1 80 2 211676911 211681340 CAGAGAACCAGTCCTCGTG 60 211676849 211676867 GGTCCATGAAACAGAAGCC 59 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347,ENSRNOT00000088462 2 2 2 80 16 71669012 71669030 AGACCCGAGAAGAAGTCCT 60 71669478 71670685 GCTCGTCTTCGATCATTTGG 60 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347,ENSRNOT00000088462 3 2 2 80 16 71669477 71670684 CCCAAATGATCGAAGACGAG 59 71670726 71670745 CCTGCTCCTTCTCCATAGTC 59 NA Rattus norvegicus 81 Fez1 ENSRNOG00000006075 ENSRNOT00000008285 1 1 1 80 8 39342094 39342114 AACACAGTCATCCCTTATGAG 58 39342156 39347573 GGCGAAGAGAATGTTTGTC 57 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 1 2 2 81 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452302 21452322 CCCATTTGACATATCTGACCA 58 NA Rattus norvegicus 81 Cenpk ENSRNOG00000039740 ENSRNOT00000060962 2 1 1 80 2 34333969 34335211 AATGAAATGTTAGAGGTCCCAC 59 34335250 34335270 CTTCAAGAAAGTCTCACTGGG 59 NA Rattus norvegicus 81 Zw10 ENSRNOG00000054479 ENSRNOT00000080712 3 1 1 80 8 53388003 53388750 CTCTAGAGGACATCTCGACTG 59 53388791 53388810 ATACTTGTGGCCCTTCATCC 60 NA Rattus norvegicus 81 Ccser2 ENSRNOG00000022781 ENSRNOT00000016494 1 1 1 80 16 14142617 14142635 GACCATTACCACCTTAGCC 58 14131508 14142576 TTCTCTATAAGGAGAGCCTCTG 58 NA Rattus norvegicus 81 AABR07069942.1 ENSRNOG00000049004 ENSRNOT00000072871 3 1 1 60 8 42793205 42793225 GTTTCTTGTACACAGTGATGG 57 42793165 42793186 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbpl ENSRNOG00000000432 ENSRNOT00000000494 2 1 1 80 20 4411939 4411957 CAACACCGTACTCAATGCA 59 4411998 4412218 TCAATTGTAGTTCAGACCTGAG 58 NA InUTR Rattus norvegicus 81 Edc3 ENSRNOG00000019579 ENSRNOT00000026492 3 1 1 80 8 62489786 62489805 AAAGAGTTATGTGGACAGGC 58 62489847 62500595 CTAGATGACCAGGAGTTGTG 58 NA Rattus norvegicus 81 Kdf1 ENSRNOG00000055933 ENSRNOT00000081318 2 1 1 112 5 151750965 151751558 AGCCAGGATGAACTGACAG 59 151752099 151752117 AAGGATGAGTCTTGGCTGG 59 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 1 2 2 80 16 72031969 72042195 AACTTGCTCGGGAAATATGTG 59 72042234 72042255 GTTGCCAAATCTATCGTTTCTG 58 NA Rattus norvegicus 81 Rbm6 ENSRNOG00000018333 ENSRNOT00000024939 3 1 1 80 8 116552589 116554104 GACTCACATGCAGAAGCTC 59 116552527 116552547 TACCATCTTCCCATCAATGCT 59 NA Rattus norvegicus 81 Olr1218 ENSRNOG00000047382 ENSRNOT00000072247 3 1 1 60 8 43908489 43908512 TATAAGGTCATCATGTCCCATCAG 60 43908452 43908471 CTACTGTATACCCACCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neil1 ENSRNOG00000018577 ENSRNOT00000058645 2 1 1 112 8 61819652 61819759 CTTGTATCGGCTGAAGATCC 58 61819329 61819347 GTTTGGCCTTGACCTTCTG 59 NA Rattus norvegicus 81 Bcar3 ENSRNOG00000013737 ENSRNOT00000065111 2 1 1 80 2 226663041 226668756 GACTGCAAGGTTGCTAGGA 60 226668800 226668818 AATGAGTTCCAGTCCCGAG 59 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 2 2 2 80 8 94230379 94232602 AGAAGTTATGAAGGTACCTGTG 58 94230320 94230339 CCAATGTCAAACTCTTGAGC 57 NA Rattus norvegicus 81 Olr1334 ENSRNOG00000058082 ENSRNOT00000088877 2 1 1 60 8 43848142 43848160 GACACCACTACTCAACCCT 59 43848100 43848118 GAGTGCTTTCTTCACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lingo1 ENSRNOG00000017193 ENSRNOT00000023084 1 1 1 97 8 61290038 61290056 GAGACATGCGATTGGTGAC 59 61276194 61276212 TGGGCATGCTTCTCATACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rpp25 ENSRNOG00000018812 ENSRNOT00000025410 2 1 1 63 8 62284044 62284062 AATCTGCAGCTGGAGAAGG 60 62284089 62284107 TCCTCATTCTCAGCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc33 ENSRNOG00000008219 ENSRNOT00000058490 3 1 1 80 8 62815664 62815683 CTTCTGCTGAATGAACTGGA 58 62815434 62815623 ATCATTCTTCCGAATCAGCTC 58 NA Rattus norvegicus 81 Cd24 ENSRNOG00000000321 ENSRNOT00000000352 2 1 1 90 20 48335675 48339154 CCCACGCAGATTTATTGCA 59 48339205 48339226 TGGTAGCATTAGTTGGATTTGG 59 NA Rattus norvegicus 81 LOC691807 ENSRNOG00000014654 ENSRNOT00000019647 2 1 1 80 2 227095727 227095745 CTACTGGCTGGATCTCTGG 59 227095788 227096487 CAAACCAATCAGGGCAAGAG 60 NA InUTR Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000082091 2 1 2 104 16 60426537 60426555 CTTCAGGCTCTCCCATGAG 60 60419313 60419332 GTATTCTATGTCCACGGCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nkx6-3 ENSRNOG00000018147 ENSRNOT00000024532 2 1 1 91 16 73667433 73667452 TGAGCAGACCAAGTACTTGG 60 73666271 73667379 TCTGGAACCACACCTTGAC 60 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365,ENSRNOT00000087718 3 2 2 80 20 47541954 47541973 GAAGACAGCAACAACATCAC 58 47542016 47543790 AAACACTTCAGCCATCGTC 59 NA Rattus norvegicus 81 Metap1d ENSRNOG00000061587 ENSRNOT00000084797 2 1 1 80 3 58150827 58157928 TGGAAACACAATCAGCCAC 59 58157972 58157990 TACGATCCTATCCCGTGTC 58 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114,ENSRNOT00000055839 3 2 2 82 5 159566215 159566600 TGATCTCAGTGCCAGAGTG 59 159566151 159566169 TGTTGACCTGGTCCTTCTC 59 NA Rattus norvegicus 81 Neurog3 ENSRNOG00000024413 ENSRNOT00000000661 2 1 1 67 20 31761891 31761910 ATCCAAGTGTCCCAAGAGAC 60 31761940 31761958 TTGGAACTGAGCACTTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atoh7 ENSRNOG00000000384 ENSRNOT00000000432 2 1 1 179 20 27083159 27083177 CAAGTACGAGACACTGCAG 58 27082998 27083016 AAGAACTTCTGCCCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1693 ENSRNOG00000000749 ENSRNOT00000000976 1 1 1 60 20 831225 831246 CTCTGCTTCATCTCTGTTACTG 59 831186 831205 AACCATTGTCCATGAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070689.2 ENSRNOG00000060888 ENSRNOT00000057689 2 1 1 60 8 80663054 80663074 AGGATGTGTTCAGAGACTCAG 59 80663096 80663114 AACTTGACCTTGACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr3 ENSRNOG00000006736 ENSRNOT00000008809 3 1 1 81 8 133038387 133038442 GGTCTTGCAGTATTGGCAG 59 133038486 133038505 GACTGCAGGAAAGATCTCCA 60 NA Rattus norvegicus 81 Pard6b ENSRNOG00000010883 ENSRNOT00000014568 1 1 1 82 3 164828336 164828355 GATGACAACTACCACAAGGC 59 164828400 164840642 CTGTAGTCGGCTTCTTCCT 59 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462,ENSRNOT00000010440 2 2 2 80 5 128656355 128656374 CCCAGTTCTTCATCCATCCA 60 128656415 128659611 CAAGCTGATACTCACTGTCCA 60 NA Rattus norvegicus 81 Msr1 ENSRNOG00000012779 ENSRNOT00000017339 2 1 1 80 16 56835099 56857960 CGTGCAGGAATATCAACCTC 59 56835038 56835056 GAAGATCTCTACTCGGCCC 59 NA Rattus norvegicus 81 Olr1668 ENSRNOG00000053746 ENSRNOT00000089844 1 1 1 60 20 322068 322089 GTGATAACTCCTACACTGAACC 58 322029 322049 CACCCTTTACATCCTTGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1673 ENSRNOG00000047925 ENSRNOT00000051646 2 1 1 60 20 421606 421628 AGTAGTAACTCCTACACTGAACC 59 421568 421587 TCCCTTTACATCCTTGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a10 ENSRNOG00000025384 ENSRNOT00000030203 1 1 1 91 3 162192040 162192063 CTTTCATCTACTTACTCGTTCCTG 59 162192113 162192543 AAAGCTCAGAGGGAACCTC 59 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000066600 3 1 2 80 20 1053199 1053217 CCTGGAGAATGCTTCCTCC 60 879270 1053158 GGCTATGAGAGTATTTCCTCCT 59 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000051315 2 1 2 80 20 979491 979509 CCTGGAGAATGCTTCCTCC 60 879267 979451 AAGGGCTATGAGAGTATTTCCTG 60 NA Rattus norvegicus 81 Rhd ENSRNOG00000017130 ENSRNOT00000023187 1 1 1 80 5 153218712 153221464 AAGATCAACATGGTTCACATCC 59 153221504 153221523 AGAAGAAATCAGGCAACTCG 58 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680,ENSRNOT00000091132 1 2 2 80 5 164687454 164688905 CCAAGTTCAGCAAGAATTGTC 58 164687394 164687412 TCCTGCTCCAGATTATCCC 58 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000058030 1 1 2 60 16 75599451 75599475 CCATTACCTTCTCTTCTCATTTCTC 59 75589653 75599434 TTTGCTAAAGGCAGAAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 1 2 3 112 3 80677319 80713739 GAAGACTCCCTGAGGAGGA 60 80713814 80718414 GGAGATAATCTCGCTGGGTC 60 NA Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051,ENSRNOT00000084974 2 2 2 74 16 70665541 70665559 TACGATAAGGACAAGCCCG 59 70661770 70661788 GTGAAGGAGAGGGAAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113,ENSRNOT00000064400 3 2 2 104 3 171780712 171780732 CTTTGAAGAACTGGGTGAGAG 59 171780796 171781339 CCATGACTTCTCTGACATCAG 58 NA Rattus norvegicus 81 Tmod1 ENSRNOG00000009761 ENSRNOT00000013228 2 1 1 80 5 61688465 61690048 ACAACATCCGGAATATTCCC 58 61690090 61690109 TGAACTTCTTCACGTAGGAG 57 NA Rattus norvegicus 81 Rag1 ENSRNOG00000004630 ENSRNOT00000006115 1 1 1 78 3 91217429 91217447 ATTCTAACACTCTGGCCGG 60 91212807 91212825 CTCAGGGTAGATGGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Champ1 ENSRNOG00000000112 ENSRNOT00000000124 1 1 1 112 16 80850260 80850278 TCTTCACTCCAGGACACCT 60 80843176 80843194 AAGCTTATCGCTGGTTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bmp7 ENSRNOG00000053384 ENSRNOT00000084990 1 1 1 80 3 170929761 170954995 CTTCGTCAACCTAGTGGAG 57 170929699 170929717 TTGGAAAGATCAAACCGGA 57 NA Rattus norvegicus 81 Srsf10 ENSRNOG00000007992 ENSRNOT00000064925 1 1 1 80 5 154212743 154212764 TTATGAAAGGAGGAGATCAAGG 57 154212804 154213152 GTCGGTCTACTGTTTCTAGG 57 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 1 2 2 81 5 155705920 155705939 TGACAACTATGCAGTCACAG 58 155703125 155705876 ATAATCCTCTTGCCCTGCA 59 NA Rattus norvegicus 81 Rbm39 ENSRNOG00000049814 ENSRNOT00000065729 1 1 1 80 3 152242761 152245558 GTAGGAAAGGTTCGAGATGTG 59 152242701 152242719 AACAAACTCCACATAGGCG 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 1 3 3 80 5 100474447 100493413 CGAGATCAAGATATGTCTTCTCC 58 100474389 100474410 AGAATCCTGTGGAGATGTAGAG 59 NA Rattus norvegicus 81 Olr845 ENSRNOG00000048481 ENSRNOT00000071002 1 1 1 80 5 69246694 69247228 CTTGTGAGGTCTTAGCTGTC 58 69246633 69246654 CCATATTTGATATCGCCATGGT 59 NA Rattus norvegicus 81 Vps36 ENSRNOG00000012654 ENSRNOT00000016995 1 1 1 80 16 74725741 74726593 CAGAAGACGAGACCATCAG 57 74725679 74725697 AGCCATAGGTTTCTCTGGT 58 NA Rattus norvegicus 81 Vps36 ENSRNOG00000012654 ENSRNOT00000016995 3 1 1 80 16 74730315 74730333 GACCCAAAGAAGATGGGAG 58 74729325 74730272 GCTCTTATTCTTCCTGGCTG 59 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000080767 3 1 2 80 3 148082851 148091389 CAGGTAATCCTGAGAAATGCT 58 148091429 148091449 AGTAGACATAGACGCTTTCCT 58 NA Rattus norvegicus 81 Smim19 ENSRNOG00000024930 ENSRNOT00000036506 2 1 1 87 16 74413066 74413084 GAGATGCTGTCAGAACCCA 59 74413134 74420165 ACTTTCTTGAAACGGGATGC 59 NA Rattus norvegicus 81 RGD1559708 ENSRNOG00000012174 ENSRNOT00000016204 3 1 1 60 16 22411034 22411052 GAAGGAGCAGTTTGCTTGG 60 22410992 22411011 ATACTGGATGCCCTCATTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499843 ENSRNOG00000032177 ENSRNOT00000040741 1 1 1 80 3 90721210 90723078 TTGACAAACCACCAAACCT 58 90721148 90721168 TCAGGAGACACTCATATCTGG 59 NA Rattus norvegicus 81 Carkd ENSRNOG00000015021 ENSRNOT00000065043 3 1 1 81 16 83334609 83335574 GGCTGTCAAGAGTACACAG 58 83333941 83333961 AGAATACGTGGGTCAAATCTG 58 NA Rattus norvegicus 81 LOC688765 ENSRNOG00000032376 ENSRNOT00000042908 3 1 1 60 16 58731053 58731071 TGGATTGCAGAGACATCAG 57 58731011 58731031 TCAACAGTTCATCAGGAATCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankle1 ENSRNOG00000017156 ENSRNOT00000023065 1 1 1 84 16 19803367 19803385 CTCTACACTGCTTCCAGCA 59 19803433 19803636 AGTGTCTGGAGACCTAGGG 60 NA Rattus norvegicus 81 Mrpl41 ENSRNOG00000029875 ENSRNOT00000044802 2 1 1 103 3 2181889 2181907 TTTAAACGGCTAAGGCTGC 59 2181591 2181823 GATAAATCAGCTCTGGGCTG 59 NA InUTR Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823,ENSRNOT00000008959 1 2 2 80 3 171003259 171003844 ACGGATCCATGTCCATGTC 60 171003887 171003906 TATCAGAAGGGAGGAGACCA 59 NA Rattus norvegicus 81 Pck1 ENSRNOG00000028616 ENSRNOT00000031586 2 1 1 80 3 171214464 171214854 TATGACAACTGTTGGCTGG 58 171214897 171214916 CTCTTGGGTAATGATGACCG 58 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 3 2 2 81 3 60029831 60032569 AGAAAGTCCAAGGAGTTCGT 59 60032613 60032631 TTCCTCATGTCTGGATGCT 58 NA Rattus norvegicus 81 LOC100912267 ENSRNOG00000046517 ENSRNOT00000047252 1 1 1 60 16 7412074 7412092 GGAAACAGATGGTCACCGA 60 7412032 7412052 ATTTCCGTCTTTGGTCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plcg1 ENSRNOG00000051490 ENSRNOT00000078909 1 1 1 80 3 156756608 156756629 AAGAACAACTACAGTGAAGACC 58 156756669 156756781 GTCACCATTCTCCTTAGCAG 58 NA Rattus norvegicus 81 LOC290876 ENSRNOG00000026740 ENSRNOT00000057803 1 1 1 86 16 81305804 81307391 GAAGATGAGATAAGGACCAGCT 60 81305739 81305757 CTTCTCTGAAGCACTGCTG 59 NA Rattus norvegicus 81 LOC100359503 ENSRNOG00000046342 ENSRNOT00000045955 2 1 1 60 16 70644596 70644617 TATCATCCGAAACTTCAAAGGC 59 70644638 70644656 TGACTCCAACAGGGTTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp964 ENSRNOG00000042504 ENSRNOT00000066776 1 1 1 60 16 21473592 21473610 TGAACCTGAGAAGTCCCAC 59 21473550 21473568 GAAGCCATTCGCCATACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052844.2 ENSRNOG00000059153 ENSRNOT00000066294 1 1 1 80 3 78493383 78493404 TCTCTTAAGACTCAAAGTCAGG 57 78493323 78493342 AAAGAGGATGACAACCAGG 57 NA Rattus norvegicus 81 Ptpn1 ENSRNOG00000010574 ENSRNOT00000014309 2 1 1 80 3 164710178 164710197 CTGTGAGGATGAGGACATCC 60 164710239 164711308 TGACTCATACTGCTCATGCT 59 NA Rattus norvegicus 81 AABR07024666.1 ENSRNOG00000049047 ENSRNOT00000023369 1 1 1 60 16 11214836 11214854 TAAAGTTCAAGGTCCGCTG 58 11214794 11214814 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F7 ENSRNOG00000032737 ENSRNOT00000037806 2 1 1 80 16 81829551 81829645 TATTTACAGCGATGGCGAC 58 81829489 81829509 ACATAAGACTTGAGGTGATCC 57 NA Rattus norvegicus 81 C1qtnf4 ENSRNOG00000009140 ENSRNOT00000012110 2 1 1 120 3 79717500 79717522 AAACATAGGCGACTTCGAC 58 79717606 79717624 CTTCATCAGCTTCACCGAC 59 NA Rattus norvegicus 81 AABR07036436.1 ENSRNOG00000053151 ENSRNOT00000089144 3 1 1 88 12 43252191 43252210 ATGGCAGATAACTGTCACTG 58 43252260 43252662 CTGAGGAGTCTGAAGTTGTG 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 3 2 5 92 X 22291375 22291393 CTCAGTAGTTCCCTGCGAG 60 22291918 22292523 AACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 2 2 2 80 15 34358553 34358917 CATCATTTCAGACGGAGGC 59 34359681 34359699 CCCAGCATCACAAAGTCAG 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943 1 1 2 80 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138352976 138353585 GGGAACATTCTCAATCTTCCTC 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 1 2 5 80 X 26443839 26443954 GACTGCATTAGTGCTTACCC 59 26444266 26444285 ATGGGTTCGTAACCATAGGA 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 3 2 5 80 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443839 26443954 GGGTAAGCACTAATGCAGTC 59 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 3 2 2 80 1 282569948 282569968 TCTGAAGACTGCCTGTATCTC 59 282570009 282570737 GATCCATACCATCACAGGCA 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046 3 1 6 80 1 76530905 76530926 TGGAGAAGGAACTGATTCTTCC 60 76252511 76392713 CTACTGTGAAGTGATTCTTCCAG 59 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000067506 2 1 2 80 4 179415811 179421318 GTTAGGAACGACAGAGGAG 57 179427545 179427563 TTCATGGATGCTTTGGGAG 58 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567 2 2 3 80 15 43020549 43020568 AGACAGTGTAGGAGGAAAGG 59 43020610 43020950 TACCGTATCTGCCTGTTCTC 59 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 1 2 2 80 1 176918262 176918281 CATGTTTGATCTGCTGTTGG 58 176918323 176919883 ACTTTCACCATCACTTCTCC 58 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 2 2 2 80 1 176899029 176899050 GACACGTACCTTGATATTCCAC 59 176899090 176904992 ATGCAATGCTTCTTCCACAC 60 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728 1 1 2 82 13 26812143 26812162 CGTGCTACTCCTCTACATGG 60 26807850 26812098 CTCCTGTGACCACTACGTG 60 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000090097 2 1 2 83 13 26807849 26811208 TTCATCCAAGTCACAGGAGG 60 26807785 26807805 CAGAGTTATAAACGCTCCCTG 59 NA Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000079850 3 1 2 80 17 10138992 10139011 GATTTGTGGAAGGATCGTGG 59 10139051 10139553 ATGGTATTGACTACTTGCAGTG 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000022980 2 1 3 80 17 10617660 10618273 ACAGTATGAATCGTTAACGCTG 59 10617601 10617620 TCCATGACATAGGTGAGCAG 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000012334 3 1 2 80 3 6568399 6568420 AAGTCTACTGCAATTTCACAGC 60 6568460 6570771 AAGAAGTGATTCTGGCTCCC 60 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000061814 3 1 3 156 13 25990274 25990292 CTCTAAGGAGGGAAGAGCG 59 25994667 25998650 TGCTGTAACACATTGAAGCT 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 1 2 5 80 1 87656310 87656331 TAATTTCACTACTGGAGCAAGG 58 87656369 87656515 CATTTACAGACAGCAAATCTGG 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161 1 1 5 91 1 87650231 87655732 GTGTTCAAGCAGCTTTGTG 58 87655787 87655805 TATAGCGACCTCTGCTCAG 58 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 1 2 2 80 18 28856269 28856287 ACAGCCAAGTCCTACTGTG 59 28850544 28856227 GTTTGGACATTTGCAGGAGAG 60 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000020994 3 1 2 92 1 196960420 196960438 CTATAGGGCACGTGTGAGG 60 196960494 196961780 AGCTGGAAGTGGTTGTACC 60 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 3 2 2 80 1 7312544 7312563 ACTCTAGCCTTGAAAGAGGG 59 7297585 7312507 GTAAGGGCATTGAATATAATCTGGG 60 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245 1 1 2 96 1 101474442 101505689 ATGACTCCCTAGGTGTTGG 58 101505749 101505767 TAGCTCATGGTGACAAGGG 59 NA Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 3 2 2 81 17 39160772 39161327 TTGCCAAGAAGGTTAAACATGG 60 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000090181 1 1 2 105 1 170395566 170395584 CTAAAGTTGGTGGAGCCAC 59 170395090 170395497 CAAAGTCCCTGTTGCTTCC 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000087120 1 1 3 86 4 7228981 7229245 TTAAAGTGGGCATAGTGGG 57 7228913 7228931 ATTCTTCCTGGACGTAGGT 58 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 1 2 3 65 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569123 2593682 TTGCGAATCCTAAGGAGGT 58 NA DesignRelaxed Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587 3 1 3 88 15 39735108 39735128 CTGAGTAACAGTCAGACACTG 58 39732057 39733263 GGTGTATGATTGCTATGTTGAG 57 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396 1 1 2 93 4 145239970 145239992 CGTTCTCGACTATTTCTTTGAGG 60 145240534 145240960 GAAATCCTGCGGTTTGGAG 59 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 2 2 2 80 18 28039111 28039130 CCAATAATGAAGAAGGCGTG 57 28039172 28042804 CAGCATTGATAACCTGAGGA 57 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 3 2 2 81 17 38996322 38998090 CGAATGACCTCGTTTGAAGAG 59 38998132 38998151 TCACTAGATGTTGCAGAGGG 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 1 2 2 80 3 110479616 110479634 AGCATGTTCCTGTCCACTC 60 110479676 110482326 AGAATTGAGCTTGTTCTGTGG 59 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085 1 1 2 80 17 18037403 18038285 GTGTTTAAGAGTTCTTCCGGG 59 18041210 18041228 AAACTTGCCGATGTTTGCT 59 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591 3 1 2 80 10 18082223 18082241 GTTCTCTTCCCAAAGTGGA 57 18081286 18082179 CTTGAATAGCCTCCTGGTC 57 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021 1 1 2 88 10 18258425 18359729 AACCTCAAAGGTTGTACGC 58 18250381 18250399 CTGACATACGGGCATACAC 58 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000068353 1 1 2 86 15 39893957 39893975 AAGAAACGGATCCGATGCA 60 39893028 39893908 GTATTTGACCCGTCATGCTG 59 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 2 3 3 80 X 37983843 38069145 ATAAACGAGGAGAGCGACG 60 37983781 37983799 TCAGCTCAAGCTCATCGTC 60 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000022203 1 1 2 85 17 15852660 15854039 TTACACTTGATCAGACCTACTG 57 15854085 15854103 TACTTGTTGCTCACTCAGG 57 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234 2 1 2 83 2 187275410 187275428 AGAAAGAGTACAAGTGCGG 58 187275475 187281076 CAGGCATCTCATCAATCCG 59 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 2 2 2 83 1 100395181 100395200 GCTGATACCAATGACAGGTG 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 1 2 2 80 18 33413696 33413717 GACAAGTTACAGCATCGATGAG 60 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000040877 2 1 2 80 18 33413850 33413868 GAAGAGCTTCCCGTCTGAG 60 33413754 33413809 ATTTCAAACGATTCCCAAGGTC 60 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 3 2 3 80 5 48281273 48282414 TTCATGGAGCATAAGGACAG 57 48282456 48282475 TCTAGAGAACCTATGGCTCC 58 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 3 2 2 80 10 91019095 91019113 AACAGGATGTGTTCCAGCA 60 91018417 91019052 CATAGGCAAACACTGAGCAG 59 NA Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 2 2 2 80 4 78322451 78322469 AACTACAATGGAAGCCCAG 57 78322511 78325813 TCTTGTATTCCAAGCTCATGG 58 NA InUTR Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346 1 1 2 80 10 30980742 30980760 GTCCAAAGTTCGAGAAGCA 58 30980803 30981338 AAAGTAGCCTTGGCAATCTC 58 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 2 2 2 80 12 19520752 19525973 CATGAGAAACATGGCCCTG 59 19526017 19526035 TGGTGGTAGAATCCAGAGG 58 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 2 2 2 86 12 50273627 50273645 CATCTCAGTGCTGAGTCCT 59 50273695 50277576 GTCTTCAGACCTAGGTGGC 60 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399 2 1 3 80 7 18564680 18570339 TCACAGAGTGGCTAAAGGA 58 18564618 18564637 TGATAAACACAAAGCACACC 57 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000079335 2 1 2 80 1 190592683 190592702 ATACTGAGGGAACCACAGAC 59 190591272 190592643 CACTAATCAGAACATCACCCTC 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995 3 1 2 82 1 83966413 83966748 CCACGGAAATGGCATAGTG 59 83966794 83966812 CAAACTCCTTCAGTGCTCC 59 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650 2 1 2 82 1 220244975 220246091 GTGAAAGACCTCAGTGTAGAC 58 220246135 220246153 AAATCCGCCTCTTTCTGAG 58 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102 2 1 2 110 4 114880008 114880029 CTGCTTCAAAGATCCTCAAGAG 59 114883395 114884659 GTCGAGTTGTGGTCTTTCG 59 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000079498 2 1 2 85 1 73660394 73660889 CAAAGGAAGGGCTGAATCTG 59 73660161 73660179 TGATCCTGGCTGAACACTG 60 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 3 2 2 114 1 87046663 87047024 GCTTCAAGACTGTGATCGG 59 87047101 87047120 ATCTTCACAGAATGCAGCTG 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505 3 1 4 93 15 51903562 51915295 TTAGTCGAAGAGGAAGGAGC 59 51903488 51903506 GAACTGTAAAGACCCGTGC 59 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000005109 3 1 2 81 10 11050637 11050657 ATTGTGACCAATTACTGGGAG 58 11051789 11052254 CTAGAAGCTTGCCTTGGTC 58 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 1 2 2 80 17 18447403 18447421 CGCTAGACTGTGAGATCGT 59 18442833 18447365 GAAATTCTCTATAATCGTCACCCTG 60 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000082719 2 1 4 88 17 43524239 43532904 CCATGTCAGGAAGTATTGGT 57 43524170 43524189 GCTACTTATCCATGGGTGAG 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 3 2 3 80 9 10359438 10369874 AAAGGACAGAAGAGATCTGC 57 10359301 10359319 AGGGCAATAGTTTCCATCC 57 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449 3 1 2 81 16 83017031 83019469 AGACCCTGAACTCAACATGG 60 83016969 83016990 GAGTCTAGACTTGATTGGTCGT 60 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000049873 1 1 2 80 13 89589431 89589449 ACGTTCTGCCTTCAAACAC 59 89589493 89589602 CTGGAACCCTACATGGACC 60 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 1 1 1 113 5 162032732 162032750 GGAGAACGCATCCAAACTG 59 162052479 162052497 TTACACTCGCTGAAACTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 2 6 6 84 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646211 282646441 GAGGAAGCATCATTTGTGC 57 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 1 2 2 80 1 192026236 192027054 GATTCACTCCATTACAGGTCTC 58 192027094 192027113 CTCAACGTCTTGTCTTCAGG 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000051497 3 1 4 83 10 82091972 82091995 CAGGTTTATTTCCCACGGC 59 82091907 82091925 TCAATGTCTGCATGGTGGA 59 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000065753 2 1 2 80 7 145088600 145088737 GACTATGCTGACTCCATCG 58 145088779 145088799 GATCACTTTGATGTGTCTTCG 57 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000007958 1 1 2 132 7 115968058 115969177 CTTGCTATGGCCTTACGGT 60 115967552 115967963 AAGGAAACACTATCTCCCGG 59 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667 3 1 2 91 9 65340325 65340344 CTGGCAACAATGATAGAACG 57 65340398 65340910 ATCCTATGCCCTAAGGTCC 58 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000020717 3 1 2 82 2 187081534 187086189 CTCCTCTCAGAGCATTAAGC 58 187086234 187086252 GCTCTGGGACATCATACTG 57 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520 3 1 3 80 1 220857313 220857331 CCTTCCTGGCTCCTATCAG 59 220857372 220857633 CGACACTCATCTATGTCTACAC 58 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 2 2 2 80 1 255200579 255215921 CCTAACATCAGGAATGTGAGAG 58 255215959 255215980 TAATGAATCCATAGACATGCGC 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 3 4 5 80 4 22296909 22296929 ATCATGAATCAGGAGATAGGC 57 22296183 22296867 TTTGGAGACGTCATCTGTG 58 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000011166,ENSRNOT00000082359 3 3 5 172 4 22381190 22381208 CTTCAGTTACCCGTCTCGA 59 22280193 22380873 GTCCGTCGATACTGACCTC 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000011166,ENSRNOT00000082359 3 2 5 80 4 22380621 22380643 CATGGATGAGATAGAGAAAGCTG 59 22380303 22380581 AGGGTGTCAAATTTGTGGG 58 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998 1 1 2 146 7 115908654 115908672 TACAGACACAGCAGATCCA 58 115908283 115908545 CACTGGTATGAATCACTGGG 58 NA InUTR Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 1 2 3 80 10 56722887 56723149 GAAGTAACTTCAAGAATTGGGC 58 56723190 56723208 CAGCACAGTCTTCACTTCC 59 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239 1 1 2 82 6 21077693 21091615 GAAGTTGGTTGAGCTCTGG 59 21077313 21077332 CTTTGCACTGTTTGTGACAG 58 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997 1 1 3 80 X 62491680 62491700 CCTTCATTTCTCCCGAAATGG 59 62452714 62491641 AGGGACTTGTCAGAATACTCTG 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000018147 3 1 3 85 X 62662427 62662448 GCCAAAGTCACTACTATGAGTC 59 62661624 62661744 CCATGCAACTGCATAAACAG 58 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785 1 1 2 80 1 222707137 222707158 CTATTTCCAGCCTTACCAAGAC 59 222686584 222707098 GATCATGCACTGGGAAATCAC 60 NA Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 3 1 1 65 2 54962580 54962598 TGCTCATCTGCTCCATTCC 60 54953378 54953399 CCACACTTGGCTGATATAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368 2 1 2 92 10 63747068 63747086 ACGTTTGTTCGAATGCTGG 60 63747142 63753429 ATTTGCACTCACGGTTCTG 59 NA Rattus norvegicus 81 RGD1563590 ENSRNOG00000038231 ENSRNOT00000045816 2 1 1 60 X 60989962 60989981 GTAAAGGCTTACCCAAGACC 58 60989921 60989943 CCTTGAATGAAGATGATACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000004885 2 1 2 83 10 34956315 34956599 GCTACGACTACAGTCAGGG 59 34956250 34956274 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 2 2 2 80 13 98453787 98454009 GAAGTGCGGAATGAGATCTG 59 98453726 98453744 GTCAGTCTGCATGACATGG 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000087094 1 1 2 80 12 13097497 13100062 TGTGTTTACAAGGAATACAGCC 59 13100103 13100121 ATGTACTCTCCAGGGAACG 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 1 2 4 80 3 57584384 57584402 AAGAGGAAGAAGACGAAGC 57 57572313 57584343 CAAACTTAACTTGCTCTTCTGG 58 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 2 2 2 80 19 25789027 25789045 AGATGAGCAGTACCGTCAG 59 25788885 25788984 TCCACCTTCTCAACTGTCTG 59 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000081993 1 1 2 80 17 30705712 30706088 GTGAAGAGAAAGGCAGAAGG 59 30705651 30705669 GAGAAGAAAGCCGTCTCCT 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000079342 2 1 2 80 1 201067283 201067304 ACCAGGTCTATAAACGTTACCA 59 201041944 201067245 GGAATCTTGTAAACTGGCTCAC 60 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000047657 2 1 2 101 10 94954949 94954969 TTTGTTACTGTCGCTGTTGC 60 94958138 94958156 AGAGTCTTTCCTGTGCACC 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 3 2 9 85 20 2083047 2083515 AAGGATCCTGAGGTTTGGTG 60 2082981 2082999 AGAGTGCTTTGCTCTCCTC 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 1 2 2 80 9 10021187 10021291 CATGACCCAAACAAAGCTG 58 10021335 10021353 TTGCTGGTAGTAGTGGGAG 58 NA Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 3 2 2 80 6 132270167 132272069 ACACTCCTCTCCTGTTCAG 58 132272113 132272131 GGTCAGGGTTGAAAGTCAG 58 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000015963 1 1 2 80 8 64763744 64763763 AAAGACATCAGTAGCCTGGA 59 64763803 64765599 GACAGGTTTCATTGATCTACGA 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 2 2 2 102 5 156288489 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291428 TGTAGTTCAGATAGCCAGTCAG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000090021 2 2 3 80 17 47339835 47339855 ACGTTGGAAAGAGTTAATCGG 59 47339895 47340618 GCAAACCGTACACATAAACTG 58 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000089736 1 1 4 81 17 27513010 27523781 GAGAACTGAGACTTGCCTG 58 27523830 27523848 TAGCAACTTCCTGAAGCAG 58 NA Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 1 1 1 139 2 192288481 192288499 CCCAATCTTTGTCCTCCTC 58 192283243 192283261 TCTGGACACTTTGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000066895 1 1 2 80 10 82492813 82492837 GTAAGAAAGACTTCTGAGTCTTTGG 60 82489530 82492776 ATGGTATTGTCTGCAGGGAC 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000045686 1 1 4 81 5 115095226 115184022 CTCAATCCAGCCGTTTGTG 60 115095163 115095183 TCCAGTTATGACCACTGAAGG 60 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 1 2 2 80 8 112872101 112872119 ATCAGCATCTGGAATCCCA 59 112868242 112872058 GTATAGCAACCGATCCTCAG 58 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583 1 1 2 102 20 14649403 14651260 CTCATTGCCATCAGCATCC 59 14651326 14651344 TAACCTCTTCGTCGGTGTC 59 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 1 2 2 88 5 157764183 157764201 CAACTATGCCTCCTGGGAG 60 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076 2 1 2 80 10 88952724 88952745 GCTGAAATTATTCAGCATGACC 59 88953717 88959739 AAAGTCAAACACTTCGTCCTC 59 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307 2 1 2 89 6 6637408 6638632 GAAGCTCAAACTGGAATATGG 57 6638680 6638701 GCGATGAAATAAACTATCTCCC 57 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 3 2 2 80 8 70723517 70726653 CACCTGAACAAGACTTCTCTG 59 70726693 70726713 GTGAGGACTATAAATGAGGGC 58 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 3 2 2 89 20 9620295 9620313 CTTTGTGATGGACGAGCAC 59 9620366 9621854 ACCATAAAGCCCTGGAAGG 59 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 3 3 3 84 18 47505055 47505427 CATTCTAAAGGTCAGTGTAAACCC 60 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332 2 1 5 80 1 20909706 20911517 TTTAATGTTGGAGGACCTGGA 59 20909646 20909664 AAATTGCGCTTGAGCTCAC 60 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863 1 1 2 80 6 41838891 41838911 GAGGACATGTTTCCCATAGAG 58 41835595 41838851 TACATCATTAGGAAGAGCTCTG 57 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863 2 1 2 80 6 41838909 41838928 TCAACACATCTGAGGACGAG 60 41835612 41838866 CTCTGCTCCCATCCATCAG 60 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117 2 1 4 92 19 41140808 41142772 CGCAGGAGAATGAAGAGGA 59 41140734 41140752 ATGTGACAGAGATCCCTCG 59 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 3 2 2 80 10 63642296 63642460 GACTCAAGGAAGCTTATAGTGTG 59 63642497 63642518 CATAGGCTTGTTCAATCAGACC 60 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000004350 1 1 2 142 13 99142407 99143763 AATCATGAGAAAGCGATGGC 59 99143868 99143886 CACTGCCTCTGGTAGTCAG 60 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 2 1 1 64 10 13000180 13000198 TCGGACAAAGCTGACTGAG 60 13001450 13001469 GATTTGCAGACCAGTAGAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 1 2 2 80 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958189 26958207 CATTGATCTTCACGCCCAC 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 1 1 5 80 1 80530860 80530911 ATAGAGGGTCAGCAGAGCT 60 80530798 80530816 AGTCCCATACGTTGTCCTC 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000090663 2 1 2 80 17 46682514 46682534 AATCCAGACTTACACCATTGC 59 46679129 46682475 ATATTAGCCATCTCCTGTCTCC 59 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000088995 1 1 2 80 7 70460923 70460941 CTTTGCAACTCGTGGACAG 60 70460760 70460879 GGTACACTACCTGGCTTGG 60 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 2 2 2 155 20 5804162 5805500 TTATCAACCTGGAGGACGG 59 5803646 5803667 TGTAGTAGATCCCATAGAGGGT 59 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542 1 1 3 92 8 1560195 1560213 ATGAACAAGGCCTCTTGGA 59 1552099 1560139 TCGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 2 2 2 80 9 66013520 66013541 CAGAAGCTATCAGAGCATTCAG 59 66009843 66013481 TTCTTCTACAAGAGGCTGGAC 60 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000000640 1 1 2 136 20 8366503 8366933 TGTCAGGACTGTGACTGAG 59 8367032 8367524 AGTAGCAGGTATGGAATGGG 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108 2 1 2 80 20 8325319 8325339 CACCTGAGATTTCCAAACGAG 59 8325378 8327465 TCTTCATTGTTACCGTATGCAG 59 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 3 2 2 80 5 22393170 22469217 TGGGATCAGAGTAGGAACTC 58 22469258 22469278 CTCAGGATCTTCGATAAGGAC 58 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169 1 1 3 82 6 76701304 76701322 CGATGAGCTTCAGTCAAGG 58 76701366 76701619 TATATGGACCTGAGACAACGA 58 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000051028 1 1 2 116 5 99468333 99473964 AAATTACTTACGTGCCTGCA 58 99465732 99468255 CTGGAATATCTCTGCCAGTG 58 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573 1 1 2 197 14 104191542 104268380 ATGACAGCTATATTGTGCGT 58 104268537 104274877 CATAGCATTCCAATACAACCAG 58 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000019772 3 1 2 82 9 78919452 78919474 GAGTATGTGGTTAGTGTCTATGC 59 78918564 78919410 CGGTCAATGTTGGTCACTG 59 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919 3 1 2 115 10 65021767 65023168 AGCTACCAAAGAAGCTGCT 59 65021079 65021097 TGAAGATCGCTGAGGACAG 59 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000037028 1 1 2 80 8 66870165 66870186 CCTCTAATGTGCAAACTGAGAC 59 66870082 66870128 GCATGTACTTCTCACACTTAGAC 59 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 3 2 2 80 8 114333013 114333033 TGCTCAAATGATGGTACAGTG 59 114333074 114339152 TGTCAGAATAGACCTCGTCG 59 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000083937 1 1 2 81 2 237800451 237801344 TGTGCCAGCTAAGAAACAG 58 237801389 237801528 GGTAAACTTGACTGGTCGT 57 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000083937 3 1 2 82 2 237800451 237801344 TGTGCCAGCTAAGAAACAG 58 237801390 237801529 CGGTAAACTTGACTGGTCG 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000078667 1 1 3 80 18 31094150 31094262 CAACTTCCACTACGGAGCT 59 31094088 31094108 AGACCATAATGCAGGACTAGG 59 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 2 3 4 82 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820457 37820475 ACAGCATTGATGGCTTCCT 60 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433 2 1 2 89 6 42615648 42616474 GCTAATGGAGGTCTGAAGG 57 42609361 42609379 ATATTTGGCCATGTCCCAC 58 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433 3 1 2 90 6 42615647 42616474 GCTAATGGAGGTCTGAAGGA 59 42609360 42609379 GATATTTGGCCATGTCCCAC 59 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 3 1 1 68 10 104036718 104036737 GAGTTCCAGGAGACTGAGAG 59 104036858 104036876 ATAAGCGAAGTTGGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458 2 1 2 80 X 104491615 104491633 CACTATGATCTTCGTGGCA 57 104487780 104491571 GAGTACTCAGCGATTCTGC 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 3 2 2 90 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487490 69487509 TGCTTGAGTTTCCAGTTCCA 60 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000004017 2 1 4 147 5 116705256 116705275 CCAACCACATCAACAGAAGG 59 116720811 116749858 GGTACCAGGACTGTGTCTG 59 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000012308 1 1 2 80 8 69085978 69086925 AGAGGTAAGATCTTGGGTTGG 59 69086965 69086985 GATAAGAATCCCTGTGGAAGC 59 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622 3 1 2 80 8 69072662 69072902 GGATCAGAGCTGAACAGGT 59 69072945 69072964 TGATGTTGCTCCTCAGAAGG 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881 1 1 2 138 9 89064064 89064082 CTAGATGAGTCCCGGAACC 59 89059914 89063965 CTACTAATTCACTCATGGACCG 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 3 4 7 81 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825 1 1 5 105 5 101639500 101639518 GTCACTCTTTCTCCCGAGG 60 101639587 101648428 GGGCTAAAGTCTCGGACTC 60 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 1 3 3 80 17 59714733 59714753 TTCAGAAGCTTGATGTGACAC 59 59714795 59727912 ATTCTCGCAACTCATCCCA 59 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533 3 1 4 81 3 112256885 112259839 CCATTGATACAATTGTTCCGGT 59 112259881 112259899 CCAGTGACTGAATAGGCGT 60 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 1 1 1 63 9 65789122 65789140 TTCACTGGACTGCAAGGAG 60 65784799 65784817 GGTGCGTGTAAATCATCGA 58 NA DesignNoJunction Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313 3 1 4 84 2 8939054 8939582 CTTATGCAGTGAGTTGGGAC 59 8938989 8939007 ATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000084295 1 1 4 81 2 9472246 9472372 ACACATTCAAGGATGGTCTC 58 9472184 9472202 TTTCTGCTTCTCCACAGAC 57 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545 3 1 2 82 12 17581804 17583032 GATGATGTCCCTCAGGTCC 59 17581740 17581759 AAGAAGGAGTATCGGTCACG 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730 1 1 2 80 14 76793200 76796206 TCAGTAAGGTCCTTGAAGCA 59 76799239 76799257 TGTTTAGGCTTGGTGATGG 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000084632 2 3 5 84 X 63806025 63806049 AGAGATATCATCCGAGAATACACTG 60 63805816 63805987 GGATTCCAAATTTCTTCTCCAGG 60 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 3 2 2 80 1 214180365 214180581 GATCCCACTATAGAGGACTCCT 60 214180306 214180326 TGCTGTGTCTAAGATGTCCAG 60 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000045495 2 1 4 81 7 143124240 143124988 AAGGCAATTGATGTGGACTG 59 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000064942 2 1 2 80 15 85946575 85946596 GTGGAAGAAAGCTATACACCAG 59 85943235 85946535 TCATCTCTTCTCGCTTCCAG 59 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 3 2 2 80 4 84027094 84052323 GGTAAATTCCATCAGGTAATCGTC 60 84027037 84027059 GATCATATCGAAAGACCTCAGTG 59 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696 2 1 2 80 1 102114893 102114912 ATCTCCAACTCCCTACACAG 59 102114504 102114851 GTAGTTGGAGACCATCAAGG 58 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614 3 1 2 80 5 48561451 48561469 TGGCTTACAACAAGATCCC 57 48561510 48574677 TTAGAGGTAAGAATCTTCCTGC 57 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681 1 1 2 80 1 185527054 185527074 TCTACCATTGCTCCCTATGTC 59 185527114 185527740 ACTCTTGGGTCTAGAGAAGGT 60 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000018515 2 1 2 120 14 81819600 81819618 AGGATGGAGCTGAACTCTC 59 81819783 81828335 CTGAGTTTAGCTCGTCGTC 58 NA DesignRelaxed Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000058000 1 1 5 80 1 79704027 79704046 ATTCTACACCCTACGCACTC 59 79702876 79703984 GAAAGGGAGGTGTTCACCT 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 3 2 5 81 1 79685410 79685430 TTCTACACCCTACGAACTCTG 59 79684584 79685367 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076484 1 1 5 173 2 30664768 30666572 TCAATCTGGTACACCAGGG 59 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 2 2 2 80 13 90451832 90452418 CAAAGAACTTGAGTTCATCACG 58 90451773 90451794 GCGTTGATACAATAAGTGACGA 59 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000001667 3 1 2 81 12 16056068 16058166 TCCTTCATAGCAGCTCACC 59 16058211 16058229 CAGCATTGTTGTCGGAGTC 59 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000051565 1 1 2 80 12 16039937 16039955 CACGTCTCTGGGACTTCTG 60 16039994 16042703 CATGTGTAAGGACTTCTTCAACTC 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 3 2 4 80 5 104739502 104740930 TTTGGTGATCCAAGATTACTGG 59 104740969 104740989 TGATGAACACCTCTGTTACCA 59 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324 3 1 2 86 3 162483788 162483806 GAGGTATGACAAGCAGCCT 60 162482281 162483738 CGGGAATGGTACTTCTGGG 60 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 2 2 2 80 1 72655753 72655771 ACTCTGTGCCTCTCATCTG 59 72655812 72655914 CATCTAGATCGGACTTGTTCCT 60 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005 2 2 3 111 15 61854503 61856478 GCCCAAGAGAAAGAAGGGA 59 61856553 61857677 AATTGTGTTTCCCTTCCCG 58 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266 2 1 2 80 1 187854360 187854391 TACTCTTACCCAGCACCCT 60 187853787 187853806 TCAGAGTACGACATCGATCG 59 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 2 1 1 98 15 57505509 57505527 CACTACAAGGCTAAACGGG 58 57568077 57568095 GATGGCCCGTCTACTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265 3 1 2 80 1 199685592 199685751 CCTCACTGGTTATGCTTTCC 59 199685794 199685812 GTCAGTGAAGTCACTGCTC 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000082474 3 1 2 80 3 163969829 163970020 ATGGAGATTTGGGACAGGTG 60 163969768 163969787 ACACCACTGTGTCGTAAGAG 60 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135 1 1 3 80 2 177950512 177952224 CTGAAATGATCGTGGTGGAC 59 177950451 177950470 TTCTTCGAGACTGTCTGTGG 60 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 2 2 2 80 8 67741612 67742497 CTTCTGCTAAAGCTGATGGAG 59 67742536 67742557 CATGATGAATGTGATGATGCTG 58 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000043661 2 1 2 82 3 9434570 9447759 CCATTTATGGAAGCCCTGC 59 9434506 9434524 TTGGAGTTCCATCGAGCTG 60 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 1 2 4 80 6 99203186 99203206 ATGCATCTGGGTATCATTACG 58 99184559 99203144 TCCTGGATCCTTGAATGCT 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 2 2 4 80 6 99203186 99203205 TGCATCTGGGTATCATTACG 58 99184558 99203143 CTCCTGGATCCTTGAATGC 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 2 7 7 80 15 5507396 5507416 AGATGACCAACTGGATAAGTG 58 5464086 5507354 AGTTTCTGATGCGGTAGGA 58 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477 3 1 2 80 2 116053580 116053598 TGTACAGTCTGACATCCCT 57 116053639 116059665 GTTAAATTCTGAACCTGAGCAG 58 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 1 3 4 80 7 140416206 140416224 TCACAGTATGGGACGTAGG 58 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000048430 3 1 4 80 12 19964595 19964616 GCTATAAGTACTGGCAGTTACC 59 19939581 19964557 TTCTTGACTAAGCATCTTGTGC 59 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 3 2 2 83 12 11407277 11500483 ATCCGTCTGACAGTATTGTG 58 11501753 11501772 CACAACAATCTTGGCAAAGG 58 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880 3 1 2 80 1 212715850 212715868 GCAATGTGACCTTCTGACC 59 212716231 212721907 GAACCTGATATAGCTGTTTCCAC 59 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496 3 1 2 80 2 187361407 187362220 TTGTCAACGATCGATACAGG 58 187361346 187361364 CATCTGACCACAGGAAGTC 58 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953 1 1 4 159 4 85588622 85588640 TAGCAGAGATGCAGCTTGG 60 85588763 85597868 ATTTGGAAAGCCGCAACTC 60 NA InUTR Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522 1 1 2 98 5 39618414 39618434 ATTTCAGTTCTCAACCCACAG 59 39617046 39618354 AGGCCTTCTATCTCTGGGA 59 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 1 2 2 80 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109744 143109998 TTTATCTCCTCACACTTGGTG 58 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000060924 2 1 2 155 12 11223753 11226421 GAAGTCTTCAAGGTGTGGC 59 11226540 11226558 CAGGATGGTCTCTTCCTGG 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394 2 1 2 105 8 97568126 97568446 AACTGGTCTCAGTGCTCTG 59 97568515 97568533 TTATTGGTCGCTCAGCTCC 60 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 3 2 2 141 4 85560616 85560634 ATTGAGATCATTGGCACCC 58 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771 2 2 3 108 1 150492434 150502999 CTAGACAAGCAGGTGACAC 58 150503071 150503089 CTAGCAGGGAAATGTTGGG 58 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000076990 3 1 3 141 13 77958838 77958856 GGTATCCTCAGCTCTTCCC 59 77954860 77958734 GTCTTTCTGCAACACGATCC 60 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000021193 2 1 2 125 4 179305720 179306961 CCAGGACTGCAGTAATGGA 59 179298018 179305632 AGATCTTTGGCCCTAAACGT 60 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 3 4 4 81 12 11235614 11235632 TCTTCAGGATCCATCACCA 58 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195,ENSRNOT00000088917 1 2 3 164 6 106153125 106153143 TCCAACCTAGTAGATGCCG 59 106159525 106162221 AGAGGAGTCCTTACTGCTG 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 1 2 6 80 5 47907010 47907029 AGCACAAGTTATCCTTCCTC 57 47907071 47907161 GAGCCTCTTCTAACAACCTC 58 NA Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 1 1 1 60 11 71749984 71750002 ACCACAACCCTGATATCCT 58 71748533 71748551 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000085042 2 1 2 80 3 8915079 8919285 ACACTCCCTATGGGAAGAC 58 8915017 8915037 TGTGAATGAAATCCCGTTCTG 59 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000085074 3 1 2 80 10 65668492 65668510 GGAAGAGGAACGAAAGCAG 59 65668429 65668449 CTTCTCTGCAAACTCATGGG 59 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000077307 2 1 2 171 5 171292096 171292114 GTTCATCTGATGGGCTCTG 58 171292635 171294169 CTCATGATTTGAGGCCTCC 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000036156 1 1 2 80 1 266027643 266027661 ATGAAGAGGAGGACGAAGG 59 266027705 266029850 GCATCAGGTCTAGCAAGTC 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000036156 3 1 2 80 1 266027642 266027661 GATGAAGAGGAGGACGAAGG 60 266027703 266029849 CATCAGGTCTAGCAAGTCCT 59 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 3 1 1 116 9 82054304 82054323 CTGTTCTTCCTACTGCTGCT 60 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000090765 2 1 4 84 1 262905659 262913313 TGTCTCCTTGGAAGACAGC 59 262913361 262913379 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 2 2 4 113 1 51049430 51049451 CTGAAGCTGGGTTAATCTACAC 59 51049522 51050231 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 3 2 4 139 1 51049404 51049422 AACTGCTGCAATAGTCCCT 59 51049522 51050231 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 2 1 1 60 11 65750217 65750235 CAGCAATTGTCCAAACCCA 59 65747412 65747432 AATCTGTCTGACACAACAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000077730 1 1 2 80 7 73285405 73285424 ACCCGAGAGTAAATTTGCCT 60 73285465 73289143 GCTTAACTTGCTCATTGTCGT 60 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392 1 1 2 81 10 13415273 13415291 ATGGAGCTCACTTCTGTGG 59 13415335 13416597 TCTGATGTGTTGGAGAAGCA 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392 2 1 2 82 10 13415273 13415291 ATGGAGCTCACTTCTGTGG 59 13415336 13416598 GTCTGATGTGTTGGAGAAGC 59 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000042594 2 1 3 108 6 107295443 107315143 AAAGATTGAAAGCTACGGGA 57 107293241 107293260 GTCTGGTCAACTATGAGGTC 58 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 2 2 2 80 18 61700390 61700413 GACTTCCGTAATAAACCCTATCCT 60 61697278 61700353 GCCATTATTGATCATGACCGT 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000075846,ENSRNOT00000002030 2 2 3 80 12 25513753 25513771 CGGATACCTGGAGATCAGC 59 25513256 25513710 GGAAGTGGTCTAATGACGGT 60 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498 1 1 2 110 11 77474831 77474849 AAGAGGAGTTTGTGCTGCT 60 77465239 77474757 CTGCTTCCACCGTATTTCC 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000080338 3 1 4 80 1 189393395 189393416 CAGCTTATCAAAGAGCTACAGG 59 189393454 189394993 TGAAACAAACTCCACTTTCTGG 59 NA Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 1 2 2 80 17 10107678 10107700 AATGGAGAAGACTCTGTAGATGG 60 10107734 10112284 CCTATTATCAACCTGCCTATTACTC 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164 3 1 4 87 1 265552643 265573059 ATGACCAGCTTACGGACAG 60 265552574 265552592 TGTTCCTGGAGTTGTTCCA 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 1 3 3 110 X 104896793 104897677 GAACCTAGAGCTTACCTGGG 59 104897750 104897768 TCCTCCTCTCATGTCATGC 59 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520 1 1 2 80 15 104095348 104095366 GATGTGCGTTACCGATTCC 59 104095410 104101870 GCCTGGATGTAACCATCCA 60 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520 3 1 2 84 15 104095342 104095360 GTGGAAGATGTGCGTTACC 59 104095408 104101868 CTGGATGTAACCATCCAGC 58 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000070975 3 1 2 82 10 109618710 109618731 GTTATCATGATCCAAGGGACTG 59 109618773 109618794 TCTATGTCCTCTGCCTTGTG 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000078150 1 1 3 80 1 254553122 254558254 CCGAGTTTGTGCTCATGAC 59 254553060 254553078 CTGCCTTCATTCCGTTACC 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000078150 3 1 3 83 1 254553117 254558249 TTTGTGCTCATGACCAGAG 58 254553052 254553072 TTTAATCCCTGCCTTCATTCC 58 NA Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 2 2 2 80 5 161773890 161794870 AGGACTTCAGCTACAGTCTC 59 161773829 161773848 CCTTTCTGCATTGTCTGGTG 60 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000004716 2 1 2 82 13 92336071 92337522 ATTCAAGCCAAACACTTCGA 59 92337567 92337585 TAGTTGAGTCCTCTCAGGC 58 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509 1 1 2 80 13 92332868 92332887 GGAGTTTGAACAGAATGCCA 59 92333976 92334867 TTGAGCAACGATCCATCCA 59 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 1 1 2 80 4 84659369 84660329 ACGTGATTGATGACTTCGAG 58 84660370 84660390 GACCTGGTTTGTATTCGTCTG 59 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 3 1 2 80 4 84659368 84660328 CACGTGATTGATGACTTCGA 58 84660370 84660389 ACCTGGTTTGTATTCGTCTG 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651 2 1 2 80 20 9387668 9387686 TTTGAGCAGGAGATCGAGG 59 9387729 9389511 GGCTAACTTCATTGGCTCTG 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000090240 3 1 4 80 4 15742460 15742479 TTGGTATTGCCAACCTACAG 58 15740481 15742419 GGTTTCTGAATATCTGGCCTG 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000034969 3 1 4 83 4 15742476 15748958 TTACAGGTATTTGGCCTTGG 58 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 1 2 2 80 7 143521609 143521627 ACAAAGGTCGCCTACAGTC 60 143520635 143521569 TGATCTCTTCCTCATACTTGGTC 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000017885 2 1 2 94 1 193131923 193132728 TTGATAAGAATGGCAATCCCAG 59 193132783 193132801 TGAACTGAGAGGTTGTGCT 59 NA Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 2 1 1 82 5 103230256 103230274 CTGCCTGGAGAAACTTCCA 60 103229268 103229287 CCAGGATGTCCTTTAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558 3 2 3 98 8 68132728 68154062 ATCTCTTTCATGGAGCTTGCT 60 68113820 68113838 AACAATGCACTGCAGAAGC 60 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 2 2 2 90 10 45313500 45313618 CTTGACCAGGAAGGAGAGC 60 45313671 45313690 TATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000006963 3 1 2 125 3 44464951 44483851 AGTATGGAAGATGAGGAGCC 59 44464845 44464863 ATCATTGACGCTCAGGGAG 60 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 1 2 2 90 8 71938661 71941336 GTGAGGACCTGAGGAACTG 59 71941390 71941408 TAGGAGGTACTGCTCCTCC 60 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000091052 1 1 2 81 10 46155485 46155503 TCTGACCAACCAGAACCTG 59 46154819 46155442 CAGCAAACTCTTCATCCACTC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436 1 1 2 120 1 29432194 29432212 GAATCGCTATCTGCTGCTC 59 29436644 29440772 AAATGGAGACTTTGTCTCCTG 58 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 3 1 1 60 17 62299592 62299612 ACTGTAATGTGACCATCATGG 58 62298068 62298087 AGCATTCTTAGCAAGACTGC 59 NA DesignNoJunction Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000074740 3 1 3 165 4 183306371 183308685 CAAATTCAAGAGGGTGGAGC 59 183306225 183306243 GGATAGACGTGTACTGGCA 59 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 1 2 2 80 7 137982434 137983662 CCTTCAACTCAAAGACGGTG 59 137982373 137982392 TGTAGATTGGCAGGACAGAC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 8 9 106 4 14159651 14159669 TTTGGATCTTTGACGTGCA 58 14159736 14167453 CTTGGCTAAATAACGAACTCTG 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 3 8 9 126 4 14159631 14159649 CACCACTGTGTACAGACAG 58 14159736 14167453 CTTGGCTAAATAACGAACTCTG 58 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100 2 1 2 80 1 100319723 100319742 GTGACAAGGCAAAGAGACTC 59 100319785 100320217 TCCCATCGATCAGACTTGG 59 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 1 3 3 80 1 192533862 192539534 TCTGCAAAGGGCTAATGAC 58 192539577 192539596 CATGCTCCTTAATGTCTCGT 58 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442 3 1 3 81 1 192539601 192539620 TTTCCGGTATATCGACTGGG 59 192539664 192574696 GTCTCGCTTGTCTCTAGCT 59 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 2 2 2 66 15 19727787 19727805 GACAGAGACTGGTGTCGTC 60 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 3 2 2 80 4 89165554 89165575 ATCCCACTGTGAAACTATTCTG 58 89165614 89167467 CTGTCAGGAACAAGAGAAACC 59 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 2 2 2 121 5 160575353 160575371 TGCTATCCATCTGCCTGAG 59 160571605 160575268 CTCTTCCTGGCTGTCTTCC 60 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 2 2 2 80 14 14953724 14953742 CAAGTGACCAGTTAGCTGC 59 14951700 14953682 CAAATGGACCCAGATTCAGTG 59 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 3 2 3 86 12 17753010 17753028 TGAGGTTAGAGGAGCACCT 60 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 3 1 1 72 1 81594135 81594153 TAACAATGCTGAGAGCACC 58 81593992 81594010 GGTGGTTCCCAGCTTAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307 3 1 2 89 15 14622557 14622575 CAGGTGACCTTTGAAGTGC 59 14622351 14622507 AAAGAATTCTGCTGAGGATGAG 59 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000090680 3 1 2 80 3 112713639 112714622 AAGGACAAGGAGCAAGTAGG 60 112713578 112713596 GCTGAATTCTGGAGGGAGG 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 1 2 4 81 17 72247455 72356851 TCAAGAAGAGGAGGAAGAGGA 60 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802 1 1 4 177 17 72209468 72218772 GGATCCAAGTTCGAAACATGG 60 72219620 72225930 TCATACAGAGCCAAGGAGC 59 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000087506 2 1 4 80 13 78227500 78382239 CTTATCACAAAGGACTCTGCAC 59 78227441 78227461 TTTGAAGTAATCGTGTGCAGG 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 1 2 2 80 5 173349616 173349634 CCTATGCTCTGTGAAGCCA 60 173349677 173349768 AGCATACAGCTCTTGGTAGG 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 3 2 2 80 5 173352910 173352928 TGTGAACCAAAGAGACAGC 58 173352972 173353074 AATAGACAGACCTGGCCAG 59 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000078647 1 1 2 84 10 12989706 12989727 CAGAAACATGTCACCTTCTACC 59 12989556 12989575 TAAGCTCCCACTCAGTTGC 60 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672 3 1 2 80 10 12991190 12991314 AGATTGCCATCTTCAGTTTGTC 59 12991131 12991149 CGTGGAAGGTCACCATAGG 60 NA Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 1 2 2 80 5 33177432 33177450 TGGAAATCGGTCCAGTGAG 59 33176950 33177297 AAGAGTGAGTGATGTATCCCAG 59 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 3 3 3 81 11 67251993 67252011 GCCAAGAAGGGAGAAAGAC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154 2 1 2 80 14 92368403 92368424 ATGATGAAGATCTGTCCATCAC 58 92366942 92368362 TTTCTTCCATCCCTCCCAG 59 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 2 2 2 80 3 60721405 60726730 AGTCTGGCTATCATACTGCT 58 60721344 60721362 GGATCGCTTCTGTATGTGG 58 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800 3 1 2 84 1 221298893 221298912 TCTATACCTATGCCCAGCTG 59 221273786 221298846 GAGTTGAGAAGCTTCACGA 58 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748 1 1 2 80 2 27258070 27268589 GACCAATGAGCTCAACATCAG 59 27258010 27258031 TCACTGAGAAGAAAGTTGACGA 60 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000064264 1 1 2 83 7 97778407 97782674 CCACTCACAACGGAATTATAGTG 60 97782717 97782735 AAGCCACATTCAAGAACCG 59 NA Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 2 2 2 80 17 78778222 78779256 AATGAAAGGTTCTGGAGAACTG 59 78779296 78779315 CATTTGCATTGGGTTCTGAC 58 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777 2 1 2 124 11 83925085 83925627 TCTCTGCAGCACTTCTACC 59 83924979 83924998 ATTACTTGGGATCCAGCAGG 60 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 1 2 2 82 10 67821227 67821245 TAAAGCAGCTCGTCTGGTC 60 67821291 67828242 AACATAGCTCGACCTCCTG 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 2 2 2 82 10 67839752 67842227 GCAGTCAGGTATTATTCATGCA 59 67842270 67842288 CATAGCCTTCGAATGCCTC 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320 3 1 4 95 18 6770066 6770084 AAGACTTGATCCTGAAGCC 57 6767981 6770008 CTGGAAATGACTCTCCAGAC 58 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 3 3 3 81 20 3149177 3149685 GAAGAAGGCAGGTGAAAGAG 59 3149851 3149870 CCACAACAATCCTGCAAGAG 60 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 2 2 2 80 19 45037231 45040929 AAGAAGGGATGGGTACAGG 58 45044982 45045002 TTTCTTGTAGGCAGAAATGGG 59 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 3 2 2 80 15 109347345 109347363 AATGCCACCGTAATGAAGC 59 109345774 109347303 GGCTAAGTTACCTGTGTTGTC 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 1 3 3 80 8 72486351 72592911 CTGTTGGCCTATGTTTCTGG 59 72486290 72486308 CAAGGCATTAGACAGGGTG 58 NA Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 1 2 2 80 12 19630137 19630158 CTACTTCATAGCCCTTCTTCTC 58 19630197 19630430 TCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450 2 1 7 123 X 70597269 70600493 GTATGAGCAGGTGAATGGC 59 70600976 70600994 GTCATCAGGGACATGAGGG 60 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000088114 2 3 7 86 X 70597258 70597276 AATCGGGACTGGTATGAGC 59 70600225 70600496 ACTGCCATTCACCGATAGG 60 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 2 3 3 81 20 3296487 3296506 CTCCACATTGTCCTGTTCAC 59 3296131 3296445 TCCGACTCTTCTTCAAGACAC 60 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 1 2 3 80 20 3297993 3298112 GCACAATTTGGAGACATGGA 59 3297932 3297951 TGTCGGATGTCCGTAATGAG 60 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203 3 1 2 80 18 70972769 70975404 GAAGAAATTGAAGAAACGGGCT 60 70975444 70975463 TTTGAACTCAGGACCTCTGG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000068276 2 1 8 80 4 8214548 8215367 AAGAGTCAACAGGCATTTCG 59 8212547 8212567 AGACGAAGGATCAATTTCTGG 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671 2 1 4 94 15 819767 819785 TGTCTACAGTGGGTTACGG 59 819843 837333 ACTACAATGTGCCAGTCCC 60 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 2 2 3 80 7 42331550 42332269 GTCCTGAGAAAGATTCCAGAG 58 42332310 42332329 TGTCATTCCTAAGGGAACTG 57 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967 3 1 3 93 13 48071361 48071379 AGATCCGAAAGACTGCCAC 60 48068525 48071306 GTTGCTTCAATATCCTGTGCA 59 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152 2 1 2 82 4 81238590 81238608 GTGGAGGACCTGGATATGG 59 81238325 81238547 TCCACTTCCATAATTTCCTCCT 59 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453 1 1 3 104 1 80616810 80616830 GTTAGGAGGCTTCTCCTACTG 59 80614841 80616744 GTTGTGATTGGCCAGTCAC 60 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 2 2 3 84 2 196594325 196608508 GCTAACCCAGAAATGACATCAG 60 196608553 196608571 CTCCACCTTGAATCCCAGG 60 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 3 2 2 81 12 25500929 25500947 CCTGCATCCTATTTGGAGC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 3 2 2 82 1 87777167 87777269 CACCAGCGAATTCATGTAAGAG 60 87777106 87777127 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642 2 1 10 90 7 117253868 117289764 CATTGCAGATGAACGAGACC 59 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 2 4 4 80 7 142044287 142046420 CGTCAGTATCCCAAGGTCC 60 142044225 142044245 GACTTCCTGCATATCAGAACC 59 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 3 2 3 235 20 3439936 3439954 ACCATCTCCACACCATGAC 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000055542 1 1 2 80 4 178350164 178389748 CAGCACAGTACAATGGAAGTC 59 178350104 178350125 CTTCTGAGGTGAGGTAGATGAG 60 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000084742 3 1 5 124 9 43830673 43834251 CAAGACAACAGGGTGTCAC 59 43834338 43834357 ACTTCCTTAAGCTCAGCTCC 60 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000013331 2 1 2 80 15 23576509 23576529 AGCATTTGATGAGCTGAAGAC 59 23572672 23576468 TACTCTGGAAGCACAAGAGG 59 NA Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 3 2 2 80 7 11306847 11307048 ACCTTATCTTACAGATCAACGG 58 11307088 11307107 CCTCTGACTTCTCAATGAGC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000083528 2 1 3 80 14 114540309 114540380 GAATCAGATGGAAGGAGGG 57 114540247 114540265 GAAGCTCCATGAACTTGGT 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884 1 1 2 80 10 14527319 14527337 GTGCAGCTTCTGAAAGAGG 59 14527380 14527532 CATTTGCTTCTGAAACGTGG 58 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 3 4 5 99 19 43234661 43234679 GAGCTGGCTCTTCAAACAG 59 43234739 43237112 CTCTTTCCAATTTATTGCCTCG 58 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000082856 1 1 2 80 6 122970170 122970188 TTACAAACCGCATCGTCCT 60 122970228 122973707 ATCTCCAATCTTATCAGAGACGG 60 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000030056 1 1 2 111 7 34786649 34788943 ACTGTCTGGTCAGGAACAC 59 34781301 34781320 CATCACCATCACCATCTCCA 60 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481 3 1 2 82 6 26573754 26574820 CCTGCCATCTACAAGGTCC 60 26574866 26574884 CACTGACCACACTCAGAGG 60 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682 1 1 2 80 14 19416081 19424561 GAGTCCCTCAGAGTCTCCA 60 19424603 19424623 CCTAAAGGTACTGAGGATGGG 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 1 4 4 80 4 85682354 85682373 AGCTCAAGTAGGTGAGATGG 59 85682416 85684388 TCTGTCATCCAGACTTGGT 58 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 2 2 3 108 19 53609229 53612065 CTATGCCAAGCTGCTTCAC 59 53496025 53496045 GATGATGAAGAGTCCATCCAC 58 NA Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 3 2 2 83 2 243148293 243148311 TTGTGCTGATCCTTGTGTC 58 243148358 243148852 TAGTTTGTCCAGACCTGGG 59 NA Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 2 2 2 80 8 99909769 99914978 CGAGGCAAGAGTTAGAAGTG 58 99915021 99915039 AGGCTCTGCATAAGTTCCA 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 1 2 2 80 14 21998355 21998857 TGGCACAGAAACATCATCC 58 21997904 21997922 GGCTGTATGCATTCATCCT 58 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000078947 3 1 2 80 7 124184227 124184248 CCACAGAACTGGATTCTAACTG 59 124182697 124184187 AGAAGGAAGAAGCATTTGCG 59 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 2 2 3 88 15 28311303 28311632 AGGGACAGACTCATTCTGTG 59 28311234 28311253 GAATATCGCTGGACGTTTGG 60 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 3 2 3 90 15 28311305 28311634 CCAGGGACAGACTCATTCTG 60 28311234 28311253 GAATATCGCTGGACGTTTGG 60 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 3 2 2 81 19 55417370 55422944 CTGCTCATGGACGATATGG 58 55417307 55417326 CCATCCGGTCTAAATTTGGG 59 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000019528 2 1 2 99 19 55391994 55393673 CCAGGCTGTCATGAATTGG 59 55391913 55391931 CTAATGGGCCCAGAAACAC 59 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408 3 1 2 80 1 47985713 47985732 CCTTCTGTCATGGGAGTAGG 59 47989486 47991225 GTCAACATCCTCCAGGGAC 60 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053 2 1 2 95 10 46579433 46592846 CATCGAAGACATGCTTCAGC 60 46579357 46579375 CCTGTGTCTCCTGTCTCAC 59 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 1 2 2 80 18 86365382 86383886 CTGATCATAACTGATGGTGGA 57 86383927 86383946 GATGACAAGTAGCAGTGAGG 58 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 3 2 2 81 4 99410038 99413192 CAGTGATCCCAGGTACTGC 60 99413234 99413255 TTTAGATGTGCTTGTTTGTGGG 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 4 6 81 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566951 3566969 GCTCTGCCTGAAATCATCC 59 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000065187 2 1 2 82 1 199198891 199198914 GGGTGTTATCAATTCAGAGATACC 59 199198954 199199763 CTCCTTTCACCTTGCTTGTC 59 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983 1 1 2 88 1 220088594 220089502 AGCCAACTAAAGAATCTGGGA 59 220088526 220088544 GAGGACAGCTGTAGGAAGC 60 NA Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 2 2 2 105 10 47767080 47767099 TGTTGACTTCTCCATCTCCC 59 47767166 47767554 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 3 2 2 80 2 196511842 196511862 TATGAAGACATCCTCAGCCTC 59 196510766 196511802 CTCACAGCACCCATATTAGGA 59 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 3 1 1 98 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11479525 11479543 GTGTGGTAGGTGGTCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538 3 1 2 82 4 177033413 177033432 TTACAGGGACAACCCTAACC 59 177026154 177033371 CATACACAACGTCTCCTTTGAG 59 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000046229 1 1 3 80 9 81566984 81567005 CCTGAGCTAGAATACATTCCCA 60 81567046 81628382 GGTGTACAGGCTGTACCAG 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 3 2 5 98 18 79413330 79424849 CCACATGTACAAGGACTCAC 58 79424910 79424928 AAGAAGTGGACTACTGGGT 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 1 2 5 80 1 15835979 15840753 CCCGTAGATCAGGATTTGC 58 15840795 15840815 CATTCTTCCAATAACACGGAC 57 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 2 2 2 80 15 27765419 27765624 GGAGGATACGTAAAGCTGTG 58 27765358 27765378 GATGCAGTTTAGAGACTTGGG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000016340 2 1 2 105 11 69837669 69837687 GGTAGAGGATGGTGACAGC 60 69837756 69856144 GTTGCCATCCTTGTCACTC 59 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 2 2 2 80 5 147861942 147862700 TTCCAAAGAGCCAAGTCCT 59 147861880 147861901 CTCTTCAGAAACTCCACAAACC 60 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000085680 1 1 4 80 7 28414386 28417586 CGCACCTCCAATAAAGATACAC 60 28417627 28417645 GAGCTGGTAAAGGTGAGCA 60 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368 2 1 2 80 1 199381340 199382253 CTTGCTGGGTGAATTCTGG 59 199381278 199381298 TTGAGAGGGTTCTGTATCCAG 59 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000002309 2 1 2 141 5 79235714 79236163 TCACAATTCAGCGAGGAGG 60 79235591 79235609 TTGGTCTTGAAGGCCTCAG 60 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 3 2 2 81 20 12339794 12339814 CTTAAGACCTCGATCACACTC 58 12335605 12339751 TGAAGTAGATGCGGAACTG 57 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000047737 3 1 4 81 16 6156344 6156362 CCTGGAACACGTTTGACTC 59 6150107 6156299 TCACTGTCAGATGGGTCAG 59 NA Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 3 1 1 60 17 70045335 70045353 CTGATGCAGACCAAGATGG 58 70041941 70041963 CAGGTAATGTCTTTGTCTCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 1 2 2 80 1 79953613 79953995 CGGCTTGGAGAAGAAAGAG 58 79954039 79954057 TTGAAGACCTCCTTCACCA 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000061303 2 1 5 80 3 2267461 2268300 TCCCGAGACACTAATCTCCT 60 2268343 2268361 ATGATGGATGGGTCGTCTC 59 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848 1 1 2 80 1 140811740 140818274 CGCTGCAGACATTGATGAG 59 140818317 140818336 CATGTGAAAGTGTCCAAGGC 60 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 3 2 2 80 19 38229217 38231889 GGAGGGTAAGAAGGTCTCC 59 38231933 38231951 CAGAAGTACAGGTTGTGCC 59 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866 3 1 2 80 2 114413623 114423583 CAGAAGACAAGATCACCGGA 60 114423624 114423644 CGATGTCATATCCGAACTGGA 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000037115 3 2 3 80 2 174336900 174336919 CTGTGGAGAATGATGTTGCA 59 174335450 174336861 GGTTATCTCTATCATAGGCACCT 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000075671 3 1 3 80 12 11072912 11073011 AAGACTCAAGGAGATGTTCCC 60 11072852 11072870 GGTTTGCCTTTCTCTTGCC 60 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443 3 1 2 85 10 34954489 34954509 AGCTGGATGACATTCTAACAG 58 34955439 34957622 ATGAGTATCTTCTGGAGGGT 57 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000025764 3 1 2 95 3 3854951 3854972 CTTACAGGAGATACCTAAGCCC 60 3854873 3854894 CAAGGAGGTGCTGATTCCA 60 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 3 2 4 81 1 200671086 200672158 GGTGAATGTCACAGATGCC 59 200671023 200671043 CCTGTTCTCACTGACAAAGTC 59 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000078532 2 1 2 81 17 67899592 67899611 TGAGTTGACCAGACACTTCC 60 67899069 67899548 AGACCTGGAGAAACACCTG 59 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000051362 2 1 2 80 18 1281378 1285575 ACGGAAATCTTCCAGTTGG 58 1280840 1280859 GCCAACCTTCAATTCTTGAC 58 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 2 1 1 109 15 31642255 31642274 AATCAGAAATGCAGTGCCTG 59 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786 2 1 3 80 13 103234663 103235284 ATAGTCAAGGATAGGCTCTACTG 59 103234605 103234623 CAGAATTTCCGCCAATGCT 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 1 2 2 80 8 112661831 112668501 GCTCTATGAGCATGAAGTCG 59 112668544 112668562 TTCAAGGTCAGTAAGCGGA 59 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000085684 2 1 2 81 7 40245897 40246145 GATCTCAGAATGAAACCATAGC 57 40246186 40246205 TGATGGTCAAGGTCTAAGTG 57 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000080241 3 1 3 80 2 62193177 62194515 AGACAGGTCTCTGAAAGGG 58 62194557 62194577 AGGTTGACATTTCTGTCTCCT 59 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 1 2 2 80 3 97892548 97895053 GAATTCACGAAGGGTATGGC 59 97895095 97895114 GTTGGAAGCTGACTGTACAG 59 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 3 1 1 142 1 80141721 80141739 CTGTTCTACTTGGGCATCC 58 80158286 80158304 ATCTTGGTCCGCATTTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 1 2 2 80 2 195671127 195671148 GAGTGACTTTCTAAGTCTCCCA 59 195671189 195671829 TCTTCCCACTCTTCACCTG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 1 2 3 80 11 80933953 80967274 CTAATGAACTCTCAGTTAGTCACC 59 80933896 80933918 CCATACAATTAGGATTCCTTCGG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451 1 1 3 80 9 111132456 111132474 TGAGAGCAGAGCTTTCTCG 60 111132516 111141948 TCTTCCACATGGAAATCTCCT 59 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000082412 2 1 2 80 1 264723509 264723530 TACCTGACCTACATTCTTCTCC 59 264723570 264724740 GAAGTGTTTCCGTTGTCCAG 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 3 2 2 80 2 189400870 189400888 TGGCGTCAAGTAGTAACTG 57 189400931 189401323 ACAGCAATACGAATACCAGG 58 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 1 3 3 80 4 147361931 147372230 GATGTCTCACAATGCCATCAG 60 147372271 147372290 ATATCACTGGAGATCTCCGC 59 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 3 2 2 98 13 80465784 80465807 GATGATTCAGATGAAGAAGAGGAC 59 80468767 80472967 CACCTGATTCTGAACATGCT 58 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000019748 3 1 3 107 2 144917463 144933778 TGTAATAGCAACCACCGCT 59 144933849 144933867 TTGAGTTCTGGTGGAGCTG 60 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 3 1 1 61 3 11588002 11588020 CCTACTACACCACTTGGGT 58 11589167 11589185 CTTGTGGATGACATGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000022571 1 1 3 105 2 208583701 208584139 GTGAGTCTGAGCTCCATGG 60 208584204 208584844 GATCCATTCTCATCACCAAAGAC 60 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 3 2 3 80 20 3316004 3316188 GAATCGCATCAATAAGGCCG 60 3316229 3316249 TTCCCTTTCGATTTCTCCTCC 60 NA Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913 3 1 2 110 X 2116459 2116477 TGCTGCTTCTCTAAGAGGC 60 2105543 2116385 TTTGGATCAACGTTCTGCC 59 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000033916 3 1 2 83 16 24582852 24582870 ATAACTTTCCACTGCCACC 58 24582782 24582802 TAAGAACAGGATGGGAGGTC 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000089468 1 1 3 80 18 72576055 72576075 GCAGAGTACAGATGCTAACTG 59 72576115 72593014 ATTTCAGAGCAAGTGCTTGTC 60 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000007371 1 1 2 88 6 33177020 33177377 CTGGGCTCAAGATGAAGTC 58 33178432 33178450 TGTACACGTACTTCCGGAG 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 2 2 2 81 5 133766381 133786200 CGCATTGTTGAGAAATATGGC 59 133766320 133766341 ACTGTGAATCTGGATTCTTCCT 59 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 3 2 2 80 3 2644806 2644929 TCTGGATGAATTGTATTGGGTG 59 2644969 2644988 CCATGAGTGTTGTACCTCCA 60 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000042606 2 1 2 82 15 61886539 61887566 CCAAGAGATTCAGAATGTTAAGGG 60 61887607 61887625 ACTGAACCAGCTCTACAGC 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473 2 1 2 80 4 152214572 152233313 AATGCTGAGAAACAGGTGGA 60 152214511 152214531 CAGCTTAGCTTTCATGGACTC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 2 2 2 81 1 100229674 100229692 CGATACCATGAGCTGTTGC 59 100229535 100229629 GGGTCAAGAAGTCTGTCCA 59 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 2 2 2 80 3 11265231 11265251 CCCATTCTCAAGAAGTCTCCT 59 11265290 11267264 TTACAATGTCCAGTTTCCAGAG 58 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000077754 3 1 2 83 5 124476197 124476218 AATTTCCAGAAAGGCCATGC 60 124476264 124476282 CTGCTGAGGGTCATTCCTC 60 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000064250 2 1 2 94 18 61261683 61308859 TCAAGGTTCACAAGAACATCTG 59 61308914 61308932 CTGGTATGTCAAACGCTGC 60 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728 2 1 2 80 10 72171358 72171376 TGAAGACCACAGGAAGGAC 59 72171209 72171314 ATCCAACATCCTCTGGCTG 60 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032 1 1 2 122 7 126444020 126461579 AGCTACCTAGCATTGTCATCC 60 126443918 126443936 GATCACGATGATGGCATCG 59 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627 1 1 3 80 9 73418546 73418566 AGAAACAGTTAATCTGCCACC 59 73418608 73429566 ATCTTCGAGGCTTCTTCCA 58 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 1 2 2 80 19 44064414 44065810 CAAGTTCACAAGTTAAGGTAGC 58 44064355 44064376 TCTCTAGTTCATCTGCTTTCAC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000019265 1 4 9 159 9 81518590 81527536 CGGAAACAAACCAGAAGCT 59 81529664 81532991 CTTTAGTAACTCATCAGCTCCG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 1 3 9 80 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545746 CGTGTATGAATATAGGCCTTAGAG 59 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 3 2 2 106 7 125271178 125274818 CTTTGACCAGAAGGTGCAC 59 125275033 125275051 TGAGGTCCAAGTTCACGAC 60 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 1 2 2 102 7 125265537 125265555 GGACAAGCTCAACCTTGTG 59 125266016 125270584 ATCTGCAAACTGGGTCTCC 60 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344 1 1 2 127 2 116403731 116403749 TGACCTATCATGTCCGCAG 59 116401752 116403643 GATAAATGGTCGTTCTCCTGTG 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000078148 2 1 2 86 2 116402788 116402811 CCATACATATGTGGTATTTGTGGG 60 116401758 116402743 TGGTCGTTCTCCTGTATGG 59 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000087085 1 1 2 80 20 20644278 20649959 GTGGTCACTCTGTAAACAGC 59 20644217 20644237 AGTACTTCACCATCAATGCTC 58 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000077687 2 1 2 91 7 144090450 144091515 CACCTCTAGAGGCCTATACC 58 144092683 144092701 ATGAGACTGTTGCATTGCC 59 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000077687 3 1 2 91 7 144090451 144091516 ACCTCTAGAGGCCTATACCA 59 144092683 144092702 AATGAGACTGTTGCATTGCC 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778 1 1 2 85 20 21935558 21941624 TGATCTCAGCATTGATTCACC 59 21935493 21935511 GGAACTGTCCATTGGTCTC 58 NA Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 2 2 2 80 3 71792426 71798397 CTTGCTTCTTAATATGGCTCTC 57 71792367 71792385 TTGTTCCTAGTGACTCCCA 58 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000091573 1 1 3 90 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769966 117773136 CTCCACTTTACAACCTCGC 59 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 3 2 4 66 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139589 81143903 TAGATTCTTGCCTCCCACTG 59 NA DesignRelaxed Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021347 2 1 5 89 1 259421071 259425632 ATAGAAAGAGCTCAGCAGTC 57 259412623 259412641 TCTTCACTGCATGGAAGTC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021347 3 1 5 90 1 259421071 259425633 GATAGAAAGAGCTCAGCAGTC 58 259412623 259412641 TCTTCACTGCATGGAAGTC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021229 2 2 5 80 1 259406627 259406646 ATCACTAATGAGCGCTTTGG 59 259402827 259406585 GGCAGGTCTCATCTCTAACC 60 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273 1 1 2 86 13 50145519 50145537 ATTCAGAAGCAGTTGCGTC 59 50145587 50149551 TTTGACCACTCTGATTGCC 58 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754 1 1 2 82 19 55904806 55904824 GAAAGGCCTCAAGTTGACC 59 55904869 55907874 TAGCAGTTCCACTGAATCCA 59 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754 2 1 2 83 19 55904805 55904823 TGAAAGGCCTCAAGTTGAC 58 55904869 55907874 TAGCAGTTCCACTGAATCCA 59 NA Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857 2 1 2 96 1 141666727 141666745 ACAGACAATATCATGGCCC 57 141665887 141666667 CTCAATCGTCCCATTCCTC 58 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000046049 1 1 2 86 1 63559625 63568653 ATCTCCACGTTTCCTTCAG 57 63559557 63559577 GCCATCTGATAGAGATAGGGA 58 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000046049 2 1 2 87 1 63559625 63568654 CATCTCCACGTTTCCTTCAG 59 63559557 63559577 GCCATCTGATAGAGATAGGGA 58 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 3 2 2 80 4 88862990 88864465 GATTCCAAGGTTGGAACTCAG 59 88864506 88864525 GATGAGCTCCATTCCTATGC 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 2 2 2 82 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712679 41712702 CTGACTGGTAATATTCCTCTTCCT 60 NA Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 1 2 2 80 10 88264443 88264787 TGGAAGAGAAAGAACGGGA 58 88264381 88264402 CCTCCATCAGAACACTATTCTG 58 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943 2 1 2 137 12 23606530 23606648 CCAGCATCAGAACGTACCA 60 23606411 23606429 AGAAGTAGTGTGCGACTGG 60 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000079407 1 1 2 96 5 165416399 165416418 TTATTGCCACAACTACCTGG 58 165416477 165416940 TTAGAGGCTCTGCTCTGAG 58 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380 1 1 2 88 18 77401938 77401956 GGTACAGTTGTTCGGACCA 60 77384132 77401886 TTCTGAGTGAGCGTTCCTG 60 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 2 2 3 131 4 51930811 51936047 GTCTTTGGTTCCGGTAACTC 59 51917546 51930720 GAGCAATAATCAGTTCCTTTGC 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 2 2 3 80 6 28518403 28518422 AAACGCTACTGTGAGAAGAG 58 28518464 28521609 GACTTGGACCTTTGTGACTC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230 1 1 3 101 14 34177428 34177446 GACATCTTCACGCAACGAG 59 34176094 34177360 TTCAGTTGTCACTGTGGCA 60 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147 1 1 2 161 1 74999560 74999578 TCTACCATAGCACCAAGGG 59 74999702 74999724 AGAAACGTGATTTCTCCTGTC 58 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000066377,ENSRNOT00000090576 2 2 3 119 3 21838990 21839009 AAGAGGAACTCTGACAAGGG 59 21831767 21834223 TTGGGCAAACCATATGCAG 59 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 1 2 2 80 2 93795219 93795239 ACCGAGATTTCCTTCAAACTG 59 93795279 93795890 CAGGGTTATGATGCTCTTCAC 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796 1 1 2 80 1 114453771 114453790 TGAGTCTTTCTGTTTGGCTG 59 114453832 114469935 TCTCTTGTGAATGCAAGCTG 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796 3 1 2 80 1 114453769 114453788 TCTGAGTCTTTCTGTTTGGC 58 114453831 114469933 TCTTGTGAATGCAAGCTGG 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356 2 1 3 86 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638217 TACAATCTTTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528,ENSRNOT00000087320 3 2 3 105 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034755 51035437 GGTACCCATTCTGAGGCTC 60 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 3 2 2 81 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781643 2781892 CAAAGGAAATCGAGAAGTCCA 58 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 1 2 2 80 6 93563584 93563603 GCACTGTCTGCAAATAAACG 58 93563645 93565104 AGTTAAATCCAACGAGCCAC 59 NA Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 2 1 1 60 X 152109991 152110009 TGTTTAGTGCTCTGCAGTC 58 152108542 152108563 TGTAACTTCATACCACCTTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 1 2 2 80 4 52162255 52164304 CTTCATCTGCGGAGAACTG 58 52164346 52164366 CTGTGGTCACATTGATTACGT 59 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388 3 1 2 81 1 80634236 80634405 AGGAACCAGAAATGCCCTC 60 80634173 80634191 CCAGCATCAAAGTATGGCG 59 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 3 2 4 80 X 115598874 115603845 GTATCTACAGCTAACCTGTCTC 58 115603882 115603904 GGGATAGTTGTATGAGGTAACTG 58 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 2 2 2 80 17 81222923 81222942 TTGAATACTGCTGAGGACTG 57 81222985 81233696 ACAATCTTTAGGCCCTGTG 57 NA Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 2 2 2 80 X 134777158 134777179 AGCTTAATGACACCCAATACTG 59 134777219 134777480 CTATTGTCTCGTTTGGCTCC 59 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991 1 2 3 80 14 34480761 34481187 CTTCAGTAGTCAGTCCATAAACTC 59 34481224 34481244 GGTAAATTTGCAGCTTGAGAC 58 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 2 2 3 80 9 95091554 95092576 AACTTCCTCTCAGCTGTTCC 60 95091493 95091515 TCTTCTACTATGACTTCCAGCTC 59 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000080056 3 1 2 105 7 139647409 139649277 TCTAGCAGTCCTACTTTCTTCC 59 139646371 139646390 CCTTCTGCTCTTCAATCTGG 58 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 2 2 2 84 1 32338072 32339429 CCAATAACTGCTATAGAGACGC 59 32338009 32338027 AAGGAGAAGACGACGAAGC 60 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069 3 1 2 123 12 24978528 24978546 ATCCTCTTGCTCAACCTCC 59 24986592 24988344 TACCAGCTCCTGGATAATAGAC 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000091167 3 1 3 83 15 35018100 35019071 CACTGAAGGAGGTTGAAATGG 59 35020143 35020161 CACAAAGCTGGATGGAGTC 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000077808 2 1 4 142 5 127613023 127614091 ACTATCAGGGATCGCTTCC 59 127614967 127614985 GTCACTGGCTTGGTTTCAC 59 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018272 2 1 3 80 1 231498156 231498174 TGCTATCTGTGCACAGGTC 60 231458502 231458525 GACCATGTCCATGATAAATGCT 59 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000084420 3 1 2 90 20 34895145 34899854 GAGAAACGACTTGGAGTGG 58 34899908 34899926 AGGACCCACTAACACAGAG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000006393 2 1 4 82 7 78559013 78574176 GAAGATGAAGGAGAAGGAGGA 59 78574220 78574238 CTCATCTCCACTGCTAGCC 60 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 2 2 2 80 3 11708862 11708880 TCATGTCCCTGATTCAGCC 60 11708924 11712685 ACTGTAGAGTCTGCACGAG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 3 2 5 81 6 80235407 80235430 GCTTAGAGTCATCTTTAAAGGAGG 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000079004 3 1 3 146 2 123348745 123348763 TTACCTCCACCCTTCAGTC 58 123333940 123348638 CATTATCTGCCTGGACTTTGAG 59 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000086078 2 1 3 80 12 31578540 31578558 TACTCAGAGATGCAGCTGG 59 31578600 31580989 CTTATGGTATTCCTTGAGGGC 58 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867 2 1 3 81 12 31537149 31538696 CTGTTAGAGAACACCCTGGA 59 31544455 31544473 TAAACTGCTCGCTTTGCAC 60 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639 2 1 2 81 16 39994276 40025153 AAGCCAAGGACAAGGATCC 60 39994213 39994232 TGTCCTCAGAGCAAGAAGAC 60 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 3 2 2 80 13 67602889 67602908 GAGTGACACTTCACATTTGC 58 67600981 67601632 TTGCTGAACTCTTTGGATCG 59 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788 3 1 2 134 6 137213053 137213071 CGTGAGATCTGTGGATGGA 59 137213169 137214215 TCATCGTCGGCATAGTCTG 59 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930 1 1 2 80 7 106739114 106742870 TTCTTCAGGAAAGAACAACTGG 59 106728767 106728785 ACGAGGATTAGAAAGGCGA 59 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278 1 1 5 82 8 6152357 6152375 GCAGGAGTTATTTCGGCAG 59 6140364 6150136 TGCGGAGAGCTAATTCCTG 60 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 2 1 1 60 4 98481789 98481807 CTGTCAGCAGAGTAGGGAG 59 98542665 98542683 TTTGATCTCCAGCTTGGTC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 3 1 1 61 4 98481787 98481805 TACTGTCAGCAGAGTAGGG 58 98542664 98542682 TTGATCTCCAGCTTGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 1 2 2 80 10 47981017 47983601 CTGACCAGGTTATTGTGCAG 59 47980956 47980974 GGTAGCTGGCTAGAATGGA 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092 1 1 2 139 10 47950573 47950591 TTCTTCCTCACCTGTGCTG 60 47949961 47950221 GACTTGAAGCTCCCTCCTG 60 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 3 2 2 80 4 153877650 153877669 AGAGATCATTGGCTTAGGCA 59 153877709 153892738 TAGGGAATAAAGAAGGCACCTC 60 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 1 3 3 140 12 25363369 25366493 TGAGAAATACGGTGAGGCC 60 25366597 25366615 TGGATGTCGTAGGTGTTGG 59 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 2 3 3 141 12 25363369 25366493 TGAGAAATACGGTGAGGCC 60 25366597 25366616 ATGGATGTCGTAGGTGTTGG 60 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 2 2 2 83 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121439 TATTCACACTCTGTCCCTTAGAG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000061398 3 1 4 80 17 4257428 4257446 GCCTTCCAGTATGTGAAGG 58 4257490 4258003 CCTACACGTTCCATTCAGG 58 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 3 2 2 81 13 53318588 53319238 GAGATACTGAAGGGACTACTGG 59 53319280 53319298 TGACCAAATCTAGGCCTCG 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063 1 2 3 81 1 190029617 190029635 CCTGATGCCACCATTACTG 58 190029678 190029827 CTGATGCACTTCTTTCTTCAG 57 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924 1 1 5 80 9 98004418 98004439 ATATGCATCCTGGTGAATTGTG 59 97989313 98004377 ACCAAGTGTGAACCCTGAG 60 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729 1 1 2 104 5 129081639 129081658 TCAAACTCCTAGACTCTGCA 58 129082149 129082323 TTCTTGTGCAATCCCACTG 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051 2 1 2 105 7 144266571 144266589 CCAAGTTCATTGGAGCTGG 59 144264478 144266503 AAGAGAAGACTGGCATAGCC 60 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 3 3 3 80 7 40308220 40309524 CCCATATGGGCTAGGAAGC 60 40308158 40308176 GTAGGCAGGTTTCTGACCT 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 2 2 2 80 10 49271861 49271880 CTCAGCTGATCCAGATGGAG 60 49271922 49273823 TTTGGTCAAACGTGTCAGAG 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 2 2 2 80 8 114604196 114606644 GCTCTGATAAAGGATGTGAAGAC 59 114604138 114604159 AATTTGTAAGCCCTATGCTTCC 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 3 2 2 80 8 114604201 114606648 ATCTGCTCTGATAAAGGATGTG 58 114604142 114604160 TGTAAGCCCTATGCTTCCA 58 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992 3 1 2 82 8 114560275 114562650 AGGAACAATAGTCCTTGTTGG 58 114559609 114559627 GTACCAAAGGACTGGTCCA 59 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000037296 2 1 2 83 12 31353728 31353746 ATCATGAAGCTGGAGACCA 58 31353793 31355424 AGACAGAGTCTGAGTCTCG 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000079535 3 1 3 94 8 82151366 82151384 GATGTTCTACATCGTGGGC 58 82151440 82153485 CATTGTACCTTATCTGCATGC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 2 2 5 82 11 78309227 78341323 GACTCAATTTAGTGAGCCACAG 59 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 3 2 5 83 11 78309229 78327257 AGACTCAATTTAGTGAGCCAC 58 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 1 2 2 80 2 256911069 256911087 TGAGAATGAAGGCTTGCAC 59 256906229 256911029 CTGAAATCGAACTGGTATCTGTC 59 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 2 2 2 81 5 166915701 166923311 TGAACGGACTTGATCCTGAG 60 166915639 166915657 AGACGTTCCTTTCCTAGCG 60 NA Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 3 2 2 80 17 6710033 6710053 AAGAGATCTCCTAGAGCTGGA 59 6710094 6711310 CCAACAATCACTGTGTTCCC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704 1 1 8 80 1 226463365 226480828 AAAGCCATCAAGTTGCCTG 59 226480872 226480890 GTCAGACTCATCATGTGGC 58 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 3 2 2 154 4 6947745 6947874 TCAACTGTCTCCAGGTACAC 59 6947991 6948009 CACCTTGTTGCTGAAGAGG 59 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000090923 3 1 2 106 18 24744553 24744802 ATGTGATTGAGGGTGACGT 59 24744869 24745414 CACAAACTTGTTCTTCAGAGTG 58 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 1 2 2 80 2 199836098 199836117 AAGGAGGTCTTCATCTCTGG 59 199836157 199837442 GGCAACAAAGTCATTATGACTC 58 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337 1 1 2 80 X 29476589 29476609 GAAGCAGAGGATTTGGATCTG 59 29476648 29485394 ATAGTAACCCACATCTTTGTGC 59 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 2 2 2 80 10 88699367 88699464 CACTTCAGAAACATGTCCCT 58 88699306 88699324 TGTGAACTTCTCTTCCGTG 57 NA Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 1 2 2 80 1 64020996 64021237 CTAAAGTTGATTGGAGAGTATGGG 59 64020939 64020957 CTTACGAATCTTCGCCAGG 58 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227 3 1 2 130 20 44804008 44804026 CCGACTACTACATGGCCAG 60 44804119 44854311 AAGACACGTCTTCTGACCTG 60 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 2 2 2 88 7 12877158 12877176 TGATCTGCAAGTCTGAGGC 60 12876767 12877107 GTTGGAGATAGTCTGGTCCC 59 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000007259 3 1 2 81 6 42857733 42857753 GCTGCTTCTACTTTCAATGGG 60 42857795 42858298 TTTGCTTCATGAGTTGCCAC 60 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000046611 1 1 2 85 1 87203129 87221448 TAGACGTCCACGAGAACAC 59 87202126 87202144 AGAATCCTGCTTTCTGGGA 58 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 1 3 3 86 4 162086885 162087878 GCATATAACAACTTGGTTCCCA 59 162087924 162087943 TATGTAGTCCTTGCCACTGC 60 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 2 3 3 87 4 162086885 162167863 GCATATAACAACTTGGTTCCC 57 162167911 162167930 TTATGTAGTCCTTGCCACTG 57 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000064743 1 1 2 80 2 3780617 3809220 CCAGGGATGTGTTTCAGAC 58 3809264 3809282 TGCTGACTATTCCTCTCCA 57 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000075078 3 1 3 81 1 217565146 217573321 AATTGGAGGAACTCGATAAACC 59 217573362 217573381 GATTCTATGGCCACGTTCTC 59 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 2 2 2 80 7 117059484 117059502 CGACTCTTGGCATTTGCTC 60 117059546 117059641 GCAATGGAATCTCTGCACG 60 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 1 2 2 96 9 16610695 16611161 CATGGACCCAGAACATGTG 59 16610617 16610635 ATCTGATATCTCCCGAGCC 58 NA Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 3 2 2 85 1 47303411 47307216 TTGATCAGGTGGTAAAGACCA 59 47303346 47303369 CCAGGTAGGAAATCCTTTATTGTC 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076674 2 1 4 143 10 23664286 23664304 CTACAGCAATGGTGAGGCT 60 23664411 23664973 TTCGGTCCTTATCCCTGGA 60 NA InUTR Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158 1 1 2 80 9 16072970 16074238 GATAAGGTATAAGAGGGCATCAG 58 16076391 16076409 GACAGAGACACGATAGCCA 59 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000088795 3 1 3 115 6 103380859 103380877 CTTCAACCACTTTGACCGG 59 103378151 103379822 CAAATTCTGCCTCTCCCTG 58 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000091320 1 1 2 84 17 9836352 9836370 GAGGACTCGATTGTGGACC 60 9835019 9836304 GACCAAATTCCATCAGCCG 59 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 2 2 2 95 9 16303759 16304243 CTCGATCTTATTGGAGACCCA 59 16304379 16304397 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 2 2 2 80 3 118608410 118608429 CAACACATTGCTGACTACCA 59 118597456 118608367 CAAAGCTATCTGGACGCTG 59 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 3 2 2 84 7 12607671 12608826 AACTACATCCAGCAGGTCTC 59 12607606 12607624 GGAACACAGTCACGTACCA 60 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000045647 2 1 2 60 7 130546891 130546910 CTGAAGGCAAGATTGACACC 59 130547603 130547621 CTGTCTCTGCACATGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 2 1 2 80 7 117000763 117001091 TGAATGAACTGGGATGCTG 58 117001135 117001153 ATTTGTCAACCCATGGCTC 58 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 1 2 2 83 8 76426399 76427600 TCATACAGTCTCAACAGATCAC 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539 1 1 2 80 11 88180474 88180493 GTCACAGAACTTACAGCTGC 59 88177151 88180432 TTCCCTGAAAGGACTTGGAG 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 2 2 2 80 8 116443728 116443746 TGTTAGAGGAGGTGGAGGT 59 116442986 116443174 CATACAGTTGTTGCCTCTTGG 60 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070 3 1 2 84 5 152629965 152629985 ACTTTGGACCCTTATGAAGGT 59 152630031 152630970 GTGAACAAACAGACGCGAG 60 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000080623 1 1 2 153 6 135751554 135751572 GACCAACTTCAACCACGTG 59 135750896 135750919 ATAGGGCTTGTTCCTGGAG 59 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738 1 1 2 121 12 39599332 39599350 GATCACACCGCTGAATCTG 59 39599435 39602541 ACTCCAGTATTGCAGGCTC 60 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181 3 1 2 80 12 32533696 32533714 AGATGGCACAGTACAAGGG 59 32533755 32594998 CATCTGTCAGAAACCTTAACCA 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 2 2 2 80 6 108657268 108657286 ATTACTGTGAAGCTCGGTG 58 108652567 108657225 GGAAGGAACTACCATTCCAG 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 3 3 3 80 19 10432512 10434234 TCTTCTCCTTCCATAATGCC 57 10432451 10432469 ACTGCAGTTCCTTCTTGAG 57 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 1 1 1 64 X 15425828 15425846 GAGACTCCTGATGTGGACC 59 15425376 15425394 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000078969 2 1 2 80 18 27634683 27635004 ACGTGAAGGAATATGGTAAACG 59 27635046 27635070 CAGTCATTATATCCGTAAGTGTCTC 59 NA Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 2 2 2 80 2 93537550 93538049 ACCAGAATCAGAACATTGTCCT 60 93538089 93538108 CACCCTTAGGATCTGTCCAC 60 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 2 2 2 90 9 16959236 16962134 AAGCAGAAGGTTATTGAGGAG 58 16959166 16959184 GCTCCAACTCAGTTCTGAG 58 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 2 2 2 80 4 155674308 155674829 CCATCTATGAACCAAGTGAACTC 59 155674868 155674887 GATTGGGTACATTGGTGCTG 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 2 4 4 80 4 165185219 165185240 GGGATGAATGTAAACAGACCTG 59 165176326 165185178 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572 1 1 2 80 4 21541929 21559906 TTCTCAGTCCTCTGCAAGC 60 21559950 21559968 CACAGAGATGAGGTGGTGG 60 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000064755 3 1 4 84 5 58684244 58684262 CTCTATGGCATCGACAGCA 60 58685579 58686362 ACTGGACCAGTGACATAGC 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 3 2 2 81 12 40435421 40435439 GTTCTGAGGAAGAAACCGC 59 40435483 40438267 CAAGGGCTTTCATGATCCTG 59 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 2 2 2 80 8 22944404 22944424 ACGAGATCTCAGAGAATCTCC 59 22944464 22944828 TCATCTTGGTAAGAACCTTGC 58 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000085535 2 1 3 92 16 49562102 49562122 GCAGAAACTCGCTTATGGC 60 49553512 49562045 GTAGTTCACATCCTGCGGT 60 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 2 2 3 80 11 34080918 34080937 AGTTACCAGACGGGATAGAC 58 34080977 34081103 CTTCACAATTTCTGAACTGTGG 58 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000079783 3 1 2 80 19 57455885 57458321 GCGAGCTGAAATTCTGTCC 59 57455823 57455842 GAGGGCTGAAGTTGAATAGC 59 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000039677 3 1 2 132 1 217648633 217648651 AGACCAAAGGACATCCGTG 60 217645486 217648538 AGTAGTGTGGGTAAACGTCC 60 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000061992 2 1 2 80 4 7258309 7258826 AAAGAATAGCTCCTTAGCACCT 59 7258867 7258885 AAGGACAGTCACCTCATCC 59 NA InUTR Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 3 2 2 84 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092592 141092610 GCTGAGCATCTGATTCTGC 59 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482 3 1 3 94 11 88874549 88877134 GAGACAAGGTTGCATCTGC 59 88877192 88877210 CATTCCTCTCCAGTTGCCT 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000079523 1 1 2 82 19 10755992 10756010 GTTCCTGGACTACAGAGCA 59 10754566 10755102 TGCATCTCCACAGAGAAGTC 60 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000079523 2 1 2 83 19 10755993 10756011 TGTTCCTGGACTACAGAGC 59 10754566 10755102 TGCATCTCCACAGAGAAGTC 60 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 1 2 3 80 12 41202607 41205272 TGTCCTAGGTCATGTTAGCC 59 41205315 41205333 CCCAGGGAGATACATTCGG 59 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000020134,ENSRNOT00000071916 2 2 2 84 1 79983400 79985157 TATTCAATGAAGAGCGGCTG 59 79985203 79985222 GAAGCAAGGAACAGACTCTC 58 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 2 4 4 80 16 54374576 54374595 GTTGGAGATTGAAGCTAGCC 59 54374635 54375686 TTCTTGATTTCTGAAAGGGAGG 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824 2 1 3 80 6 76545106 76545125 TGAGCTCAGATAGTCACTCG 59 76544072 76545064 CGAAGCCAAAGTTATTGCTG 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864 3 2 4 82 1 128226695 128226714 GAATGAACAGTCGGAAACCA 59 128217307 128226650 CCTTTGGGCATTAAGTGGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000008298 3 1 3 94 10 74537199 74568352 TGAAGGCAGTGGAAGACTG 60 74568410 74568428 ACCCTGTACATGCAGTCTC 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000016967 3 2 3 80 2 257473395 257474718 CAGAAGGCAGAGATTCTGCT 60 257473334 257473353 CTTTACATCTCCCTTGCCGA 60 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 3 2 3 81 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504496 12524951 ATCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188 1 1 2 85 16 54028886 54028906 CAACCTTGATAGATGTCACCA 58 54028953 54040546 GTTCTTGTAGTTCCAGCCT 57 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000068444 3 1 2 80 3 79861378 79861398 AACAATGATGACACCATGCTG 60 79861439 79866730 CTTCATGGACTCCTTGACCT 59 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000037589 2 1 2 85 3 149339636 149339654 CGTATAACCACGACAAGGC 59 149338246 149339587 AGGTGTAACACTGGGATCC 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000015084 3 1 3 81 1 136697397 136697417 GATGATTCTCAAGCAAGTCCA 58 136691149 136697354 TTTGATGTGGGAAACCGTG 59 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 3 1 1 60 16 14319859 14319878 GTACCTGTTCAGAGGAGAGC 60 14320195 14320216 TTTCCCAAAGACATAGACATGC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 2 1 2 82 4 39519623 39519642 CCATACGTGGAGTTTACTGG 58 39519687 39521296 AGGATGTTCTCCCTAGGGA 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000075317 3 1 6 88 12 41302675 41305880 CCTATGATGTCCTGGAGGG 59 41302577 41302595 GCACTTCCTGATGAGACTG 58 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000079883 3 1 2 94 4 65776204 65776223 TCAGGCTTTGAAGAAGAGCT 59 65775547 65776150 CACCTAAGTTGGTTTCTGTCTC 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000084769 2 1 2 83 9 82375761 82375781 GATGGACAGGACATTTCACAG 59 82375132 82375151 TCGTTGAAGGGACAGTGTC 60 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036672 2 1 4 107 8 124892715 124936114 GTCTCCACATACCAGGGTG 60 124892626 124892646 GGAAAGATGGTTCATCTGCTG 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 2 3 3 139 1 168946041 168952774 GAGAACTTCAGGCTCCTGG 60 168952876 168952895 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 1 2 2 80 10 56860221 56861092 GGAGAAAGAACTCAAGGATGG 58 56860161 56860179 CCTCGGATCACATTAGCTG 58 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 1 1 4 84 4 167353566 167353587 TCAGATTCAGATCTCCCTTCTG 59 167353632 167371300 AAGGCTCTTCATTTGCTGC 59 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942 2 1 2 85 17 12641587 12641606 TAAGAGTCCTCACGGTACCA 60 12639594 12641076 TGACCAAGTCACAGGATGG 59 NA Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 1 2 2 80 1 250573182 250573201 GGATAGAGCACCAATAGGCA 59 250565969 250573139 TCAACCACTTCTCCCACTC 59 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000056430 1 1 2 84 9 111669068 111690166 AGATACCAGGAAAGAAAGGAGAG 59 111690204 111690228 CCGACTTTGGAGACTTAATTATTCC 60 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000056430 2 1 2 86 9 111669066 111690164 AGAGATACCAGGAAAGAAAGGAG 59 111690204 111690228 CCGACTTTGGAGACTTAATTATTCC 60 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000067104 2 1 2 80 9 17742303 17742322 CAGAAGAACTGGAGACATGC 59 17742365 17746326 CTGTACGTACCAAACCGAG 58 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 1 2 2 80 6 104322441 104323479 TAATGCTACATAAGGCTCCAG 57 104323521 104323539 TTCTGATTCGATTCCGCTC 58 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 3 2 2 80 6 104322442 104323479 AATGCTACATAAGGCTCCAG 58 104323521 104323540 TTTCTGATTCGATTCCGCTC 59 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884 2 1 2 81 4 68819283 68819301 CACATGACCATCTCAGCTC 58 68814492 68819241 AAATCTGTGAGAAGTACAGCAG 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000063821 2 1 4 80 2 18522672 18552912 GCCTACTGCTTTAAACGACC 59 18522611 18522631 GGAAGTCTCAGTAGGATAGCA 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456 2 1 4 80 2 18522665 18544072 AACAAGACAGGACCTGATCTC 60 18522605 18522626 CACATAGGAAGTCTCAGTAGGA 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518 1 1 2 80 6 26543116 26543363 GCTTTATGCCAAGACGGTG 60 26543054 26543072 AGAGATTTGAGCTGTCGGT 59 NA Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 1 1 1 60 9 92927288 92927306 CATCCATGACTTTCAGCGG 59 92928135 92928153 GTAGCACTTGTCCAGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000081903,ENSRNOT00000078412 3 2 4 80 20 12861796 12861814 CAGCACAGAAGAACAACGT 59 12861338 12861752 TGAGGAGTCCATACACCAC 58 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 3 2 2 92 16 81204888 81205781 TTCAAGGACATGGTCCCTC 59 81205836 81205855 GTAGGCTAGGATCTGCTGTG 60 NA InUTR Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000066222 1 1 2 105 8 58378639 58378659 GTGGAAGTATACTCTCCTGGG 59 58378726 58384065 TAAGAACGTCACTCCCTGG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227 1 1 2 80 8 58382833 58384054 CGAGAGGATAATTCAGGGAG 57 58384097 58384115 GTTAGACACAGCGTACAGG 58 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 2 2 3 80 X 15756744 15756763 CTTCAGACAGCTTGTTTGCT 59 15756026 15756702 TGTTGTGGAAGAACTCTGGA 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000040482 2 1 3 103 3 48295248 48295266 CTCAGATCTCCAAAGCCCT 59 48293665 48293687 TAGATGTGGGTGGCTTGTG 60 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000040482 3 1 3 105 3 48295250 48295268 AGCTCAGATCTCCAAAGCC 60 48293665 48293687 TAGATGTGGGTGGCTTGTG 60 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 2 3 3 80 4 165986751 165988390 ATGGCTCAGATGAAGAGGTC 59 165985857 165985876 GACCATGTTTCTGGTTCTGC 60 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000084602 2 1 3 81 6 3343368 3344109 CCAGGCAATAGGATTGTATTACC 59 3340516 3340537 ATCCGTTAGTAGGATGTTAGCG 60 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000084602 3 1 3 82 6 3343368 3344109 CCAGGCAATAGGATTGTATTACC 59 3340515 3340537 TATCCGTTAGTAGGATGTTAGCG 60 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 1 1 2 81 16 85299044 85305257 GAGGAAACAGAACAAGATGTAGAC 60 85298986 85299005 CATCATGGTGAGAAGCATGG 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 2 2 2 80 1 178637075 178658495 GCTACCGAGTGACACTCTC 60 178658539 178658557 CTTCGCGGTTCTCTTTGAG 59 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 3 2 2 80 5 151454914 151454932 ACCATAGAAGAGGCAGAGC 59 151453365 151454795 GAAATCAGGCTCTTGGGTC 58 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 3 2 2 81 13 74490422 74490440 CTTCATGCTCTCATGGCTG 59 74485279 74490378 GACTTAATAACGCCCACGTC 59 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240 1 1 2 148 12 38520427 38524585 GAAGCTGGAATAAATCACGCT 59 38520299 38520317 CATAGCCCATGGAGAGTGG 60 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646 2 1 2 136 10 25906116 25906135 TCAAACAAGTGTTCCAAGCC 59 25904321 25906017 ATGTACTCGGTTCCCATGG 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 2 2 2 80 9 27409664 27412164 CCTATGAGAAGGTGTTGAAGAG 58 27412205 27412223 CAACCAGGGAAACATCAGC 59 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000022285 2 1 3 85 19 15396486 15396506 ACAAATTCTTCAGCATACGGG 59 15392033 15395819 TAGAGCCAATAGGTGGTGC 59 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754 2 1 2 86 1 143712633 143718171 AGTCCTACACTTCAAAGAAGTC 58 143712568 143712587 TGTTCTCCTCTTCTTTGCAG 58 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 3 1 1 79 5 58416568 58416586 TTGTAGGATGGCAACAGCT 59 58416965 58416985 ATGGTAAAGAAGTTGTAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000073355 3 1 2 80 1 128672760 128683594 GAAGCTAAAGAAGGGAATTAGGG 59 128686472 128686493 TACAAGAACGTCTCAATCTGGA 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000072244 3 3 6 90 13 84513782 84514805 CTCAGGCCTTGTATGAAGC 58 84514859 84514877 ACAGAGGGAATGGAGTAGG 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000072897 1 1 6 85 13 84491838 84491860 CTATTACTGTATCATCACCACCC 58 84491905 84513655 CAAACACCCACTCCAACAC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000064168 3 1 6 127 13 84513677 84513695 TCTTCCTGTTCTTCGTGCT 59 84513786 84522957 GTAACCTTTGCGAAAGGCC 60 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000032941 3 1 2 85 10 92227698 92227716 GCTTTCATCCTACGCAACG 60 92227763 92228313 GAAAGGTACACCACATTGCTC 60 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 2 2 2 80 2 122802605 122803684 TACTCCGATTTGGAAAGACCA 59 122803725 122803744 TGCCATACAGGTTGATGAGG 60 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 3 2 2 80 14 7234676 7235265 GAACACAAAGGATCTTCTGGA 58 7234616 7234636 CTTTCCTGGCTTAGAGTTACC 58 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000049303 2 3 5 80 4 176287328 176287347 TGTTGGATGTGCAGTTATGG 59 176282115 176287288 GTTTCATATTCATATCGGCCCA 59 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000078559 1 1 2 80 19 60105572 60105590 GAGGAGCCATAGGCTACAG 59 60105630 60118649 TGTATCCAGTAGTTTGGATCCTC 60 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 1 2 2 88 5 136704961 136705436 TGTCAGACACCTGAGAAGC 59 136704559 136704577 GCTCCATTTCCAGACAGTG 59 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 2 2 2 80 3 14505744 14505763 AAGGACAAGAAGATGGATGC 58 14505805 14506020 AACCTCTTCGATCACAAAGC 59 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 3 2 2 81 3 1389548 1389566 TGTTCAAGGAGGAAGCCAG 60 1389609 1389834 CTCCATAATGTTCACTGGCTC 59 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933 1 1 2 80 5 155966635 155968392 CAACAATGAAGGGTGATGGA 58 155968434 155968453 CATCTAGTTGCTCAAGAGCC 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014104 1 1 4 80 10 65316644 65316666 GTTCTGACTACAAGCAGTATGTG 60 65310836 65316607 CTAGGGAAATCCTCTGAGTGTC 60 NA Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 1 1 1 60 3 148057398 148057416 GCCATATTTGTGACAACGG 57 148051608 148051626 CCATGCATTGAAGGGTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149 1 1 2 81 1 134832407 134833697 AAGAAAGGAGCCACTGGAG 59 134832344 134832362 TCTCCGTGTCAAAGTCACC 60 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000051097,ENSRNOT00000067189 2 2 6 80 5 150125520 150125538 GAAGGTTGAAGAGAAGCGG 59 150116059 150125480 CTCTTGTCTAAATCCTTCCAAGC 60 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 2 2 2 80 11 32690007 32697744 CACATCATTAAGATTGTGGCC 58 32697785 32697804 GTTCAAGTACCTCCAAATGC 57 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 3 2 2 80 7 138472659 138472802 GTATTCAATTCCCGCACGG 59 138472597 138472616 GTAGATGGGAAGGACCTCAG 59 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000015718 1 1 2 80 19 17024137 17115064 GGGAAGCTAAGAAACTGAGG 58 17024076 17024094 AGAACTCGTCATCTTTGGG 57 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 1 2 2 80 8 21518762 21518781 CATTCCTAGTCTGACTCCCT 58 21517638 21518719 TGCAGTTCCAATTGCTGAG 59 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853 1 1 3 83 12 44076251 44103308 ATCGCAGGGAATTCTTAACG 59 44103353 44103372 GCTTGTATTCTTGCATCGTG 58 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000088208 3 1 2 84 8 59223431 59226092 GAGGACCGTGTTCTTAAGC 58 59223365 59223383 TCCTTGCTGGTACTTCAGG 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000051687 1 1 2 91 4 70968293 70968311 GAAGTCCCTGGAACTTGTG 58 70965710 70968238 CTAGAATCTGACGAGCCAC 58 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187 2 1 2 80 19 22061654 22065533 GTACATGGGAAACAGGTAACC 59 22061594 22061615 AATCACTCTTGGAGATAGTGGA 59 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425 1 1 3 110 11 35665352 35665373 GGTTAATGCATGCTAGAAACAC 58 35656055 35663528 GCTCATAAGGTAAATCTGGCC 59 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818 2 2 3 86 11 35696797 35749414 CACTATTAAGGAGGCCTTGTC 58 35696731 35696749 TCTGTCTTAGCCAGGTGTG 59 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185 2 1 2 93 10 55907108 55907127 CTCAAGAACTTTCTGCAGCA 59 55904817 55905850 CCCGAGAACCAGACTTAGG 59 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 2 2 2 80 2 87003455 87003473 GCCTGTTCAGTGGAATCTG 59 87003514 87004027 TTAGAGAAAGTTAGACCCAGGA 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544 2 1 2 81 1 89346004 89346954 AGTATGAGAGTGAGAAGCGC 60 89345942 89345961 TAACTGAGGTCCAGTTCTGG 59 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837 1 1 2 81 2 104919983 104939450 GGCATTTAAAGCGTTTGGT 58 104919920 104919940 GGGATTGTACGTGTAATTCCA 58 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000080699 3 1 2 80 2 104939455 104939476 AGCCTCTCAATATACTCCTACC 58 104919980 104927900 TTTACCAAACCTAAAGGCAGC 59 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 2 2 2 131 X 21702158 21702368 AAGATATGGCTTATGGTGCCA 60 21702047 21702065 TGAATTGCTGCCTTTGCTC 59 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607 2 1 2 80 8 55453423 55458297 CAAATATTCTGACGGTGAAGCA 59 55453364 55453385 CGTTCTTTGGTGTCTATTTCCA 59 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 1 1 1 60 1 64128436 64128457 CAATAAAGAGCATGAGGAAGAG 57 64129148 64129167 ACCTAGTGCTTTCTCTTGTC 57 NA DesignNoJunction Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 3 2 2 89 10 63476653 63490910 TCCATCATGTCTCGAAGTAGTG 60 63476585 63476603 GAAGGTGATGCTAAGCAGC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000001169 2 1 5 95 X 159169152 159169170 GAAGCTTCTTCCCGAAAGG 59 159169229 159171038 TTACCAAACCCTTGTTGCA 58 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000088589 2 1 3 94 3 43293237 43294087 TGTTGACACAGTATAGGATGGT 59 43294142 43294160 CATTATAGGCAGCGGAGCT 60 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000091885 3 1 3 82 7 61179485 61179504 GCAGAGCAAAGAGAAGATGC 60 61179546 61179569 CAGAATGAGATCGAGTTCTTGG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 2 4 4 88 13 91189251 91222367 CATCACTGTCCAAGGTTCAG 59 91189182 91189200 CAAACAGGAGGCACATCAC 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066896 3 1 5 98 1 215673201 215676241 GGAACCAGAGGAGAAACCA 59 215679174 215679193 TTGTTCTGACGCTTCTTCTG 59 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000080557 3 2 4 95 12 48129528 48130109 TCATTTCTGATGTGCTGGAG 58 48129452 48129470 GAATCTCCTGCTTCACCTG 58 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038 2 1 2 110 1 277166031 277166050 CTTCCATAAGATGAAGGGCG 59 277162975 277165959 TTGTACTCCACCTCACTCAC 59 NA Rattus norvegicus 81 Med28 ENSRNOG00000003592 ENSRNOT00000004912 3 1 1 94 14 70094095 70095021 TCGAACTGGTGTTGATCAG 58 70094019 70094037 GGACAGACAATTGCAACCT 58 NA Rattus norvegicus 81 Cs ENSRNOG00000023520 ENSRNOT00000033726 3 1 1 80 7 2771967 2771986 CAACAGTGAAAGCAACTTCG 58 2772027 2776131 CAGTCTTCATAGATGAGCTCC 58 NA Rattus norvegicus 81 Nmi ENSRNOG00000027502 ENSRNOT00000030373 2 1 1 81 3 37464310 37464333 GAAGTGGAAAGTGTAGACTATGAC 59 37458985 37464272 AAATCTTGTCAGCAACTCCAG 59 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 3 3 3 86 1 89557102 89557126 CGTCTCCTCTTCTTTGATAATTACG 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Mcoln2 ENSRNOG00000015089 ENSRNOT00000020452 1 1 1 80 2 252054949 252056548 AAATCAAAGCCAAGAACCTCAC 60 252056589 252056607 CTCCAACCCAGACAAGGAG 60 NA Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 1 2 2 80 8 59298347 59299796 TTGTTTCCAGTTCATCCGAC 59 59298286 59298304 GGTGGTCAAAGAAGGTGTG 59 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310 1 1 2 80 14 73954889 73961109 ACAGTCACAGCGTATTGTC 58 73961153 73961171 CTACTCTGAGCAGAGTTGG 57 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029 1 1 2 80 10 88336199 88336472 CTAGGCTCTTCTCTTCCCAC 59 88336515 88336533 TGTCCAGACCTTCGATCAC 59 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 3 2 3 80 14 83344923 83345148 CTTGCACAGTGTGATCAGC 60 83345190 83345210 TTTACTTGCTCCACCTCAGAG 60 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 3 2 2 95 20 47253674 47253694 TCCTATCTTCAAGCTGAAGGA 58 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000074685 1 1 2 80 13 36154971 36155958 TGTCTCAGGCTGATTTCGA 59 36154909 36154929 TGAACAGCATCTCTTCATCAG 58 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 1 3 6 80 10 89221806 89221825 CTCCATTACTTACCACAGCC 58 89218043 89221765 CAATAAATGGCTCCTCTCCTG 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000035310 1 1 2 81 8 50237323 50238294 CTACAGTTACCAGGACCGC 60 50237260 50237278 GTCATCCTCTTCCACGGAG 60 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770 1 2 3 80 10 89181820 89181839 CCTTCAAGACCGTGTATCGA 60 89181882 89183349 AGAGTTTCCGAGTCTGCAG 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 1 3 3 80 20 49477823 49484445 GCAAAGAGGTTATTGGTGTGG 60 49477763 49477781 TGTAGACTTCGCCGATCAG 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 3 3 3 82 20 49484492 49484510 TACTTCTGTTCAAGCCGAG 57 49477826 49484447 CACCAATAACCTCTTTGCTG 57 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541 2 2 3 80 20 49468469 49468718 CTCTCAAACCTGAAGGTCC 58 49468407 49468425 AGTAAAGCCCTTGTTGCAG 58 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 1 4 5 81 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 1 2 2 80 1 126986771 126986790 GACCTTCTACTTCATCGGTC 58 126986831 126988731 CTGTCAGAGGGTTATAACCAC 58 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 1 2 2 87 10 89168394 89168545 ATTAGCAGGTATTACAGCAACC 59 89168593 89168611 TTTCTGCCAAGGGATTTGG 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 2 1 1 61 2 36011093 36011111 CTTCATTCGATGCTCCTGG 58 36011783 36011801 ATCAGTCCATGTGTAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000089624 3 1 5 80 8 99716931 99716951 TCAAGAAGTCATGACTCTGGA 59 99716991 99717129 TGGATTTCTATCTCCTGGAGG 59 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493 2 1 2 80 10 59804378 59805017 TACTACAAGGGCCAGACAG 58 59805061 59805079 TCCATTCTCCACCAAGAGG 59 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 2 2 2 80 2 208787620 208795909 GGCCTACTATGAGATTTGTACCT 60 208795948 208795967 TAGGCATAGGGAACTTCCTG 59 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618 3 1 2 80 8 109288152 109302684 CCTTCCAAAGAGGATTTGTTGG 60 109302724 109302743 AACATTAGACAGGCACTGCT 60 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 3 2 2 80 3 156971598 156971616 TCCCAGTAGATTGGTGGGA 60 156969674 156971557 CATTGTACCTCTCATAACCGTG 59 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000083329 3 1 2 164 8 128792961 128794275 AAAGGCTCAGTTACATCCAG 58 128795219 128795237 AAGAACACAGACAGCATCC 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 3 2 7 80 16 64036977 64043375 AGCTTCTACAAGCATCTTGG 58 64048170 64048189 GATGCCAGTAATTGTCAGCA 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000038549 3 1 7 136 16 63924128 64025118 TTGTTGAGTCAAACGCCAC 59 64025216 64025236 GTATCTTGACGGGTTTGACAG 59 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000084454 1 1 2 81 1 46169894 46169917 CAGTAACTTTCAGCAGAGTAACTC 60 46169957 46182856 TCTGGAGTAGTTGCCTTGG 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000066892 3 1 2 89 12 51313075 51313642 ACTGCAGAACAATTGTAACG 57 51312239 51312258 CTAATGTTCCCAAGTCAGGT 57 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 2 2 3 80 2 210782025 210782043 CCGACTATGACAGAAGCCA 59 210724967 210781986 CATCAATTAAGTAGGGCAGATTGG 60 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809 3 2 5 102 20 4817164 4818500 AGTGCTTAGCTCTTCTGTCG 60 4817081 4817099 GAGTTAGGTGTCCCAGAGC 60 NA Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832 1 1 2 91 2 34719848 34748284 ATGACGAAGGCTGGATGTC 60 34719775 34719794 CTCAAACGTGTCTGAGTCCT 60 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 1 2 2 80 1 213516907 213516925 GACAAGAAGTGTCTGAGGC 58 213516968 213517313 ATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431 1 1 2 80 X 23488041 23489616 ACAGAGGACAAGAAACAGG 57 23487979 23487999 GGCTGATGTGCTATAATAGGT 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854 1 2 3 80 8 120438148 120442512 CCAGGATCAGGAATCAATTCAC 59 120438089 120438113 GAGTCATCCTTCCTAGATTTATCCT 60 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000085210 1 1 2 80 10 95311240 95311259 AGAAACCCATGATAGCAGCA 60 95303596 95311199 GTCTTGTGAGAGTCTTCTGGT 60 NA Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 1 2 2 80 8 32209251 32211309 CAGATGAGGATGACAGATTGGA 60 32211350 32211368 GTCGTTCTGTACTGCTGGT 60 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 2 2 2 80 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641411 52641429 ATAGCACAAGTTCTCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 3 1 1 145 16 47718543 47718562 GAGCTGGACAACAAATACCA 58 47723818 47723836 TCATCTCCCAATTCTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 1 2 2 80 12 52109600 52112054 ACGGAGAGGTGAGAAACAG 59 52109538 52109556 GGTAAAGAATGGCTCGGTC 58 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 2 2 3 80 8 96266134 96266152 CAGACATTGCTTGATGCTG 57 96262466 96266090 ATACTTCCTCTGACCTGCA 58 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 2 2 3 80 8 96132534 96132552 AGACATTGCTTGATGCTGG 59 96129136 96132491 CATACTTCCTCTGACCTGCA 59 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000083387 1 1 2 80 9 1631893 1635615 TACAGTTGAACAAAGGCGA 57 1635659 1635677 CTTGGAGGTCAGTTAGAGC 57 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171 3 1 2 109 9 1631893 1654470 TACAGTTGAACAAAGGGCA 57 1654543 1654561 TTTGGTAGCAGATGAAGGC 58 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 3 2 2 82 9 7027016 7029226 GCCAATCTTAACCTGTGGT 58 7029272 7029290 TGAGTTGGGTATTTCAGGC 57 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000089557 1 1 2 82 8 61794657 61799784 TTCTCCCAAGGAATTTGCG 59 61799830 61799848 GCTGTTTCCTTCTTTCCCT 58 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 1 2 2 80 14 86112958 86113222 TCAATAAGGCCAAATACCTCAC 59 86112899 86112917 GCAGTAGGATCTCGTCCAG 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000085725 2 1 2 80 8 87233013 87245431 GTGAGATCGAGATTGATTACACTG 60 87232956 87232976 CACAAGATGTCACATTCGGAG 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 3 3 3 80 2 216375812 216375834 GAAGTGACCATTAATCCAGACAC 60 216375647 216375774 AACCATGTTCCTGATTTGACG 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000079516 3 1 6 80 5 158109538 158109558 CATCAACGACAAGTCTACTGG 59 158109600 158114208 TGGTTGTCATTGGTTCCTG 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000072848 3 3 8 100 20 4363813 4363833 TATCGGAATTGTCGATGAGGG 60 4363894 4364086 CAGGAATCTGGTAGACTCGG 59 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000078085 1 1 2 80 16 72133046 72133066 TCAGATGTTCATAGGCTACAC 57 72133107 72133222 TCTGATATGGATCTGTGGGT 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 2 1 8 61 20 4389461 4389479 CTCATCTGCTACTCCCAGG 59 4389002 4389020 CTTCTACAGTCCACAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 3 2 2 80 5 78155412 78157312 CCCACTTTCAAGGATCAGG 58 78155350 78155369 CTGCCATTCGAATTTCAGTG 58 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000051290 2 2 3 83 8 127243008 127243031 TAACTACTGTCCTAAGATTCCCTG 59 127243073 127248302 TTCGGAGCCATGACATCAG 60 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642 1 1 2 81 5 78307511 78307530 GCCTTGATGCCTATGATTGC 60 78306761 78307468 TCTAGCCAAATCCTCCAGTG 59 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997 1 1 2 80 2 34491510 34491530 GTGTCACCAACAGTATTCCAG 59 34491572 34501184 CTCCCTGATAACACCACCC 60 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 2 2 2 80 8 62529662 62529684 CAGAGAACACTTGGTTATGATGG 60 62529356 62529623 TACTTCTGCTTCCTGGTACG 59 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000065222 2 1 2 107 2 227580630 227582427 AGTTTGGGAGCTGAGAGTG 59 227579770 227580560 AGTATCATAGGAAGCCCTGC 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 1 3 8 80 20 4482893 4482914 ACAAATTCTTCCTCTATGGCCT 60 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 3 2 2 81 2 34110113 34110131 GACATGATGAAGTGCGGAC 59 34100635 34110069 AATCGTGCAAAGTCAGTCTG 59 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262 2 1 2 80 3 161975607 161976243 GGTTCACTAACCATATCAACCC 59 161975548 161975566 GGTACAGCATGTTGTCCAG 59 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 3 2 2 89 8 132173005 132173025 ATAGCTCTCATTTCCTTGCAC 59 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000005817 1 1 2 80 8 132173021 132173647 CCTGTTCACAATGTACATAGC 57 132172961 132172979 TCTTCAAAGCAATGCAGGA 58 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 2 2 2 80 2 227188351 227190468 TTGCACCAGGATATTCTGGA 59 227188290 227188311 ACTGGTAGTACTTAGGAACAGC 59 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 2 2 2 80 3 132968383 133012107 GTGAGTACCTCAGGATGTG 57 132968321 132968339 GTCTTCAGCTTGTAAAGCG 57 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 3 2 2 80 3 132968382 133012107 GTGAGTACCTCAGGATGTGG 60 132968321 132968340 GTCTTCAGCTTGTAAAGCGT 59 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 3 2 2 83 16 74548730 74550598 AGATGAACTGGGTCCTATCC 58 74550644 74550662 CAATCCACCGGATACACAG 58 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462 2 1 2 113 5 128648122 128650884 CTGAGAAACAGCAATCGCA 59 128650961 128650979 TTCTTGTCTCGACCAGCAG 60 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000047761 3 1 2 88 16 75145528 75146003 AGTGACTTTAGGGTCGTCC 59 75146055 75146073 CTTGGGCAGGAAATTCGTC 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000030119 1 1 2 83 3 162465037 162465656 AACTCTCGACCCAACTGTG 60 162465703 162465721 CAGACCATACAGCAGGACC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 1 2 2 80 3 172177593 172177611 GCAGCATTTCTTCGACACC 60 172177655 172178006 TCATCCGTGAAACCCTGAC 60 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000081338 3 1 2 100 3 66719362 66719380 TGATGAGAAGAGGGTGACC 58 66722430 66779969 TGCTTGGTCCTTTCATAGC 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026546 2 1 4 80 16 81674436 81674455 GGATACTACCATCGACTGCT 59 81674497 81676861 GAATGTCCGGTTCAAGTCTG 59 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974 2 1 2 80 16 71158639 71158657 AGTAACCATTCCAAGCGGA 59 71147891 71158595 CAATCTTCCACCTCTGGCA 60 NA Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 2 2 2 80 3 176915013 176925762 CGAGACTCAAATGTGGACC 58 176914951 176914969 ATGAGCATAGAGCTCTGCT 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 3 2 2 80 3 173920303 173920324 AACTTACAAACCCTCTAGAACC 58 173919020 173920265 TAGGTGTAGTGATCTCATCCTG 59 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 1 1 1 61 3 150156781 150156799 TAAGTCAGAACCTGCAGCT 59 150155808 150155829 ACATTGGTACTCACTAGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 AY172581.10 ENSRNOG00000031333 ENSRNOT00000045310 3 1 1 60 MT 5229 5251 GCCTTAAGGTGATTATCATGTCG 60 5191 5214 TAGTAGAGGAGATTCTCTACACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057529 ENSRNOT00000077895 2 1 1 60 2 57997087 57997106 GTGCGTTTGTCTTCTACTGC 60 57997128 57997147 CACACCAATCCTGTCTAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpkow ENSRNOG00000022939 ENSRNOT00000039000 3 1 1 80 X 15645113 15646401 TTCAGTCAGGTAGTGAAGCC 60 15645052 15645071 CTGAGTCTCCATCAGGTTGG 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059464 ENSRNOT00000080601 3 1 1 60 2 161559621 161559640 ATGAAGAACGCATCTAGCTG 58 161559661 161559681 TGTCCATGATCAATCTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000054258 ENSRNOT00000082340 3 1 1 64 2 128343450 128343469 TACTTCCTGTCCTAGTCCCA 59 128343405 128343423 CTTATTCCACCACAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058108 ENSRNOT00000077472 1 1 1 60 2 80610652 80610671 TTCGGTCAAGGGTATACGAG 59 80610611 80610629 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051920 ENSRNOT00000077081 2 1 1 67 2 198528059 198528077 CTTATCCATTGCACTCCGG 58 198528108 198528126 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060003 ENSRNOT00000086700 1 1 1 60 5 105094375 105094398 CTTGTAGGAGAATATAGGGTTGTC 58 105094414 105094435 GTAGAGATGTTTGGAGTCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054323 ENSRNOT00000079868 3 1 1 60 8 120775761 120775781 GGTGTTACAGGTGTTCATCAG 59 120775801 120775821 CTCCGAGCATAGACATAACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058732 ENSRNOT00000089158 3 1 1 61 16 26782527 26782549 CGATACAGAGAAGATTAGCATGG 59 26782488 26782508 GAACCGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059647 ENSRNOT00000084679 1 1 1 60 11 56105875 56105893 AATTGGAAGGATACGGCAG 58 56105916 56105935 CTGAATTTGCAAATCAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053466 ENSRNOT00000084545 1 1 1 60 16 84122186 84122205 CAGTAGGTGCCAGAGAAGAG 60 84122228 84122246 GATGTTCACAGGCCAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059446 ENSRNOT00000089355 3 1 1 60 5 107757471 107757489 ACGTGTGAGTCAGTAGGTG 59 107757429 107757451 GTTCATAAGTCAGAACACTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054727 ENSRNOT00000082038 2 1 1 61 11 67337018 67337038 GGAAGGATACAGAGGTTACCA 59 67336977 67336996 GGAGTTTCATGCATTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061086 ENSRNOT00000081889 1 1 1 65 2 243846078 243846097 TCATGTGGGATCACATACAC 57 243846125 243846143 ATCCTTCCACAAGGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055120 ENSRNOT00000084067 3 1 1 61 2 150482271 150482295 GAAAGATAGGAGAAGATTAGCATGG 59 150482234 150482252 ATGCTTCACGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050253.1 ENSRNOG00000044599 ENSRNOT00000069866 3 1 1 67 5 158439019 158439037 TTTGGATATGCAGCTGACC 58 158438970 158438988 AAGCCACAGTTACCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034426.1 ENSRNOG00000050789 ENSRNOT00000075335 1 1 1 60 11 71094562 71094582 AATTAGTGATCAAGGTGGGAG 58 71094604 71094622 AAGACTACCAGCCTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056035 ENSRNOT00000090043 2 1 1 62 11 67567113 67567134 CAGCAGGTCAATTTAACATTGG 59 67567072 67567090 TGTCATCATTGAGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046763.1 ENSRNOG00000059973 ENSRNOT00000089152 3 1 1 80 5 5690261 5691746 AGAGCAGGAGTTCTTACCTG 59 5690200 5690218 GATGAGCATGACCTCAGTG 58 Novel Rattus norvegicus 81 SNORA74 ENSRNOG00000061440 ENSRNOT00000081926 1 1 1 75 16 8337994 8338012 CTGCTGGGAGAGTAATGTG 58 8337937 8337955 TCTTACACCAGAGCCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052380 ENSRNOT00000088060 2 1 1 61 8 67482613 67482634 TACAAAGAAGATTAGCATGGCC 59 67482653 67482674 GTGGAACAATTCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044386 ENSRNOT00000069653 1 1 1 60 16 50847056 50847077 CTGATATCGGAAGCTAAGTTGG 59 50847017 50847036 CCTGGCACATTACTTCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055457 ENSRNOT00000086619 3 1 1 75 8 20768871 20768889 ATGCTCACTTTGGAAGCAC 59 20768814 20768832 TCATCCTTTCACAGAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070441.1 ENSRNOG00000051744 ENSRNOT00000085200 3 1 1 60 8 70204446 70204467 GGCAATAAGAGTGATTTACGTC 58 70204407 70204427 CAAATGCTCTTGCTTCATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057236 ENSRNOT00000088634 3 1 1 61 8 36678275 36678296 CCAAATGTTGGAAACTTGACTG 59 36678317 36678336 AGGTAACATGAATGCAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056077 ENSRNOT00000081135 1 1 1 60 X 31947536 31947554 CACATGTGCATCAGTAGGT 58 31947494 31947514 GTCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057411 ENSRNOT00000081030 3 1 1 60 1 169806024 169806042 TTCACTGTGGCAATATCGT 57 169806063 169806084 TCCAGTTAGCAATAATCATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055603 ENSRNOT00000086736 3 1 1 60 6 91645256 91645276 TTGCACATCTTATTGACCTGC 59 91645216 91645237 AGCACGTAAGAAATAACACTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2465.1 ENSRNOG00000051330 ENSRNOT00000076845 1 1 1 60 1 239155959 239155982 CAGAAGTTGAGTTTAGCTTCTCTG 60 239155999 239156019 CAGAGTTCTTGTGAGATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060086 ENSRNOT00000091930 1 1 1 62 X 149156933 149156951 ATGGCAACAACAGCATAGG 59 149156889 149156907 TTCTGACTTGTGCAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055269 ENSRNOT00000089917 2 1 1 62 X 105325836 105325855 TAATACCGAGAAGAGTGGCA 58 105325880 105325898 AGCCCACTTCACAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027010.1 ENSRNOG00000023936 ENSRNOT00000039245 2 1 1 60 17 10655578 10655596 CCAGAGTTGTCTACAGCAG 58 10655536 10655554 TCACTGCTATTGGTGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055112 ENSRNOT00000077634 2 1 1 60 1 193015759 193015777 GGAACGACACAGAGAAGAG 58 193015717 193015735 CTTCATGAATTTGCACGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052829 ENSRNOT00000083092 3 1 1 66 6 11304917 11304937 CTGGTTCCTCTTCAGTTTGTG 59 11304965 11304983 AGTGGATGCTTTCCATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057259 ENSRNOT00000092057 2 1 1 68 9 110649036 110649056 GTGGATGCTATGTCACATGTG 60 110649086 110649104 CTCTGAGCACAGACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012583.3 ENSRNOG00000059093 ENSRNOT00000089409 2 1 1 81 2 198424349 198424371 AAAGGCATACCCACTCTCC 59 198424416 198424436 TTTAGTGCGAAGTTTCCAGAG 59 Novel Rattus norvegicus 81 AABR07040918.1 ENSRNOG00000048586 ENSRNOT00000071600 1 1 1 63 X 114317453 114317471 ACTTTGTAGACCAGGCTGG 59 114317498 114317516 TAGCACTCAGGAAGCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052165 ENSRNOT00000079691 1 1 1 60 X 144402099 144402121 CAGAGAAGATAACATACCTCCTG 58 144402140 144402159 GCATGGAATGTTTCATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057524 ENSRNOT00000084572 2 1 1 60 2 184860110 184860130 GTGCTAACCACTGTGATTTCC 60 184860150 184860170 CCACTACCACAAATTAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.2 ENSRNOG00000059411 ENSRNOT00000084457 3 1 1 60 X 152889580 152889599 CTAGTGGAAACACTTCTGCA 58 152889622 152889640 AGCAGAAGCATTTCTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058551 ENSRNOT00000089888 2 1 1 62 2 206573469 206573489 GCTATCTGAATGAAAGCACAC 58 206573512 206573531 TTGCATAGGGTGCTAATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053898 ENSRNOT00000084360 1 1 1 60 2 227719211 227719230 TTATTGGCAAAGCTGTCACC 59 227719170 227719191 GAATGTTACTTGCTCAAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053898 ENSRNOT00000084360 3 1 1 60 2 227719222 227719241 GCATGTTCTTGTTATTGGCA 57 227719181 227719199 GCTCAAGTCAGAATCTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054731 ENSRNOT00000089092 1 1 1 60 6 29114596 29114615 ACATTAAACTGGGACAGCAC 59 29114555 29114573 CATGAAGTTGCGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066059.2 ENSRNOG00000047886 ENSRNOT00000073390 3 1 1 60 9 954533 954551 AGCAATGAAAGCTTTGGGA 58 954571 954593 CCTGTCTTACTAAGCTGTAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.1 ENSRNOG00000046060 ENSRNOT00000071539 3 1 1 61 9 45896782 45896800 CCTTTAATCCCTCCCACCC 60 45896739 45896757 CCACATTCCACAGGTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000061003 ENSRNOT00000087570 2 1 1 62 2 67757638 67757657 CATACAACCCTGAATGCACC 59 67757595 67757614 TAAAGTATGAACCAGGCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 2 1 1 67 18 25364163 25364187 AAAGGGAAATCCTTTCAAGGAG 59 25364117 25364137 TGGTGCATCAGAAGATAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC126530.2 ENSRNOG00000053576 ENSRNOT00000074178 3 1 1 80 18 28125445 28125465 TGTGGAGAAAGAGGAACACTC 60 28125204 28125228 TTCTGTATCCATTCCTCTGAAGG 60 Novel Rattus norvegicus 81 AABR07026912.1 ENSRNOG00000054922 ENSRNOT00000089748 2 1 1 60 17 4697833 4697855 GTCTATACACATATGACCATCGG 59 4697793 4697817 GGGAAATTGTAGAGAAGTTCCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07024593.2 ENSRNOG00000048176 ENSRNOT00000075565 2 1 1 60 16 7817611 7817629 CCAGGCTACCCTTGATCTC 59 7817569 7817588 TTAATCCCAGCACTTGGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024593.2 ENSRNOG00000048176 ENSRNOT00000075565 3 1 1 60 16 7817634 7817653 CTGTCCTGGAACTCACTCTG 60 7817593 7817611 AGGCAGGTGAATCTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059902 ENSRNOT00000084135 3 1 1 60 16 49064580 49064600 GAAGGGTAAAGGAAGTCTCCA 59 49064540 49064558 GGATCCAAAGAGGAAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000058438 ENSRNOT00000080772 3 1 1 61 10 74757920 74757944 TACTAGAGAAGTTTCTCTGACTGTG 60 74757963 74757981 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000058029 ENSRNOT00000083186 2 1 1 60 16 58940292 58940310 CAAGCAGACGCCTAAAGAG 59 58940332 58940352 TCTATTGAAGTCCAGAAGAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058196 ENSRNOT00000086442 2 1 1 61 6 70134361 70134379 GTGTCAGTAGGTGGCAGAG 60 70134401 70134422 AAATGTTCATAGGTCAGAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060763 ENSRNOT00000086697 2 1 1 60 X 29292502 29292521 CCCTAGAGGCATTGTAAGTG 58 29292544 29292562 CCTTTCTGCCACCTATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057592 ENSRNOT00000081504 1 1 1 60 7 143979113 143979132 TGGAACAACACAGAGATCCA 59 143979149 143979173 CACTTCATGTACTTGTGTATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686748 ENSRNOG00000051847 ENSRNOT00000090997 3 1 1 60 8 18785986 18786006 TCCCACAAATGCTAAATCCCT 60 18786026 18786046 AAGCCTTCTTTCATGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053293 ENSRNOT00000078095 2 1 1 63 1 239939937 239939955 CATGTTTGTCAGTTGGCAG 58 239939892 239939910 CATGGGTCAGAATGCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052584 ENSRNOT00000083689 3 1 1 82 16 89613432 89613450 GTACTTGCTTCAGCAGCAC 60 89613368 89613386 ATTGGTGTCATCCTTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051985 ENSRNOT00000080273 1 1 1 71 6 67902182 67902200 TTTGAGGCACGATTGTTGC 60 67902234 67902253 AGAGAATGATTGTGGTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058362 ENSRNOT00000080204 2 1 1 71 16 27270838 27270856 AATGAGGTTTATCCGAGGC 57 27270785 27270803 CATGAAGCTACACCTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000061565 ENSRNOT00000079492 1 1 1 60 2 25747858 25747878 ACTGAACTAGTGGACAGAGAC 59 25747900 25747918 TGGGTTACAGAAGTAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054044 ENSRNOT00000087042 2 1 1 60 2 29930747 29930768 GAGGAAGATGCTATGTCTAAGC 59 29930708 29930730 GTTAGGCTACATTCAGATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057232 ENSRNOT00000088949 1 1 1 60 10 65227697 65227715 GTGGATGAGTAGGTGACAG 57 65227739 65227757 CATAGGACAGAACACTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041847 ENSRNOT00000063600 3 1 1 61 16 39597958 39597981 TCTTGTCTAATCTGGGAAGTTAGG 60 39597920 39597944 TAGGAAAGCCATCTAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.2 ENSRNOG00000039472 ENSRNOT00000060488 1 1 1 60 18 30556598 30556616 GCTCATCTCCATCAATGCT 58 30556638 30556658 TTCGTAGTCTAATGCCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061493 ENSRNOT00000079405 1 1 1 60 X 129074388 129074407 CACTGGGTGACAAAGAAGAG 59 129074347 129074366 GAAGTTCTTAGAGCAGAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000057146 ENSRNOT00000082556 2 1 1 60 X 22375198 22375219 CCAAACAGGTTGATCTTCTCTG 59 22375238 22375258 AAGTTCTAACCAAGCTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060666 ENSRNOT00000091580 1 1 1 60 10 88545082 88545100 AGAGACTTTGACAGCCCAG 59 88545122 88545142 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060666 ENSRNOT00000091580 3 1 1 60 10 88545052 88545070 TTGAACACCAACTGCATGC 60 88545094 88545112 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057113 ENSRNOT00000084394 2 1 1 60 10 88896508 88896530 GGAACGATACAGAGAAGATTAGC 59 88896550 88896568 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054307 ENSRNOT00000088781 3 1 1 60 10 15748244 15748263 GTTATAATGCGCTATGCCGA 59 15748203 15748222 AAGGTCACCATATTGATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000060616 ENSRNOT00000082649 3 1 1 60 10 40824910 40824931 CCATTTGACTACCACATTTCCT 59 40824950 40824970 TCTATCCCATAAGCATAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057414 ENSRNOT00000077279 1 1 1 74 1 267487613 267487631 GCTCAGTAGTGCACATACG 58 267487557 267487575 ATTTGCGTGTCATCCATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD70 ENSRNOG00000051367 ENSRNOT00000085368 1 1 1 60 9 66501664 66501685 TGTCAATGATGCATCTTACTGG 59 66501706 66501724 GTGGTAGTGACGAATGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135389.1 ENSRNOG00000042940 ENSRNOT00000065156 2 1 1 60 8 61604283 61604302 AGTTTGGTTTCATTGTGCTG 58 61604324 61604343 CGTCTTGCTTCTTCATGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055435 ENSRNOT00000080739 1 1 1 60 1 218731023 218731041 ACTTCAGCAGCATACACAG 58 218731061 218731083 GAAGGGACCCTACTAATCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027672.1 ENSRNOG00000059482 ENSRNOT00000085069 2 1 1 116 17 40171132 40171155 AAGGAGGAGCCTGATTGAG 59 40171235 40171253 CTCCTCTTCAGACTCTCCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058140 ENSRNOT00000083694 2 1 1 70 16 3113683 3113701 GCTCAGTTCCAACTCACAC 59 3113734 3113753 CATGTTATCCTTGCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060064 ENSRNOT00000085502 2 1 1 72 16 6596661 6596679 GCTCACTTTCTCAGCACTG 59 6596607 6596625 CACGTCATCCTTGCATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 2 1 1 60 18 45960516 45960535 ACTGGATTTCCATCTCTGTC 57 45960555 45960578 AATCAGAACTCTTGACTGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059751 ENSRNOT00000090091 3 1 1 60 10 24938151 24938169 TTGTTGCTGAAGATGCACG 60 24938109 24938127 GAGTTCTCCTTTACTGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.1 ENSRNOG00000046746 ENSRNOT00000075018 3 1 1 74 17 43621454 43621472 TTCCTGGAGAACGTGATCC 59 43621394 43621413 ATAGACCACATCCATGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061281 ENSRNOT00000077108 2 1 1 63 6 4557247 4557265 CCAATGAGGTTTCTCCGAG 58 4557289 4557310 CTTCTGAAATGGAAGCTAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057916 ENSRNOT00000080903 1 1 1 60 2 174185082 174185106 GACATCTGTGTTACACTGTTATCAG 60 174185121 174185142 AAGCTAAGACATAGCCTCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000034522,ENSRNOT00000014713 3 3 4 80 3 140160754 140184495 AAAGCCAGGGTAGAAGACC 59 140184537 140184557 TTCGCCGTAAATTTCCTTCAG 59 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767,ENSRNOT00000076749 1 2 2 81 7 115830002 115830357 CCTTCAGAATGTGGTGAGGA 60 115829940 115829958 ACTGTCCTCAAGCAGTGAC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000060113 ENSRNOT00000084556 2 1 1 60 2 96279771 96279792 GTCAAGGGTATATGAGTAGCTG 58 96279812 96279831 TGGAGTTAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034260.1 ENSRNOG00000053301 ENSRNOT00000084022 2 1 1 80 11 60336170 60342654 AGAATCAGAGTCTTCACAGAGG 59 60342695 60342713 TTGCAGAAGATGGTCACGT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000056456 ENSRNOT00000085749 3 1 1 67 12 692834 692855 CTGAAGTTGGAAGGATACAGAG 58 692883 692901 CTTCAGGAATTTGGGTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067024.1 ENSRNOG00000060699 ENSRNOT00000082814 3 1 1 80 9 26727325 26728714 AACTGTACTTTCAAGCCCAC 59 26727264 26727283 TGCTTGACAAACCTTCTGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059471 ENSRNOT00000090167 1 1 1 60 4 179738579 179738597 TGTTATGTCACATGTGCGT 58 179738617 179738639 CATAACGGAGTATAGACATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123471.1 ENSRNOG00000018377 ENSRNOT00000024755 2 1 1 60 19 29801841 29801859 GTACAGCAGAAAGGTCTGG 58 29801797 29801817 AATCTCCCACAACTTTAGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054243 ENSRNOT00000090974 1 1 1 60 10 13397055 13397073 CATGTCACAGGCGTATCAG 58 13397013 13397034 TGTTCAGTGAACATAGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000061624 ENSRNOT00000090030 3 1 1 68 4 77385900 77385918 AGTTGGTCTGAAGGTTGTG 58 77385949 77385968 GTCAAGTATGAGTGTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066516.1 ENSRNOG00000031079 ENSRNOT00000043571 1 1 1 80 9 10208798 10208819 TGTTTGACTCCCAGATCCA 58 10208736 10208754 CCTCCTTGTCAATGAAGCC 59 Novel Rattus norvegicus 81 AC110709.1 ENSRNOG00000046944 ENSRNOT00000073153 2 1 1 60 1 274306391 274306412 GCGTTGTAGTTAAGGACTATGG 59 274306431 274306451 AAGTACTCCTCGATGACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056979 ENSRNOT00000079569 1 1 1 60 10 55500050 55500073 CACATACTAACATTGGAAGGTCAC 60 55500092 55500110 GTGTCATCCTTGCACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060119 ENSRNOT00000090421 2 1 1 60 1 157987317 157987336 TCACATGTGCATCTGTAGGT 59 157987276 157987297 TCAGAACACTGAATGTTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059561 ENSRNOT00000091243 2 1 1 60 8 82404944 82404964 ATGCTACAGAGATTAGCATGG 58 82404904 82404923 ATGGAAACTTCACAACTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072773.1 ENSRNOG00000041322 ENSRNOT00000063075 1 1 1 60 2 207559727 207559745 GCTTAAAGCCCTAAGCCTC 58 207559685 207559703 CCACCAGCTTAGAAAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051584 ENSRNOT00000089039 1 1 1 60 17 65512801 65512819 GAGTTGGGAGGTGAATTCC 58 65512759 65512777 CTCTCCTGTCCAACCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012044.2 ENSRNOG00000056501 ENSRNOT00000077439 3 1 1 60 2 183573371 183573389 AGATGGTTGTAAGCCACCA 59 183573329 183573347 TAAGAGCACTTCCAGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015889.1 ENSRNOG00000059624 ENSRNOT00000090951 2 1 1 80 14 84136952 84136973 CATACAGTCTCAACAGATCACC 59 84137013 84137033 TGAGCCAATGCTGAATTAGC 59 Novel Rattus norvegicus 81 AABR07059552.1 ENSRNOG00000049791 ENSRNOT00000071219 3 1 1 61 4 23645208 23645226 TTCTCCACATACTTGCCAG 57 23645252 23645271 ACCAGTCAGAATGACTACGA 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060261 ENSRNOT00000080040 3 1 1 60 4 176170349 176170368 GGTGAAGTTCAGCTGAACTC 59 176170308 176170329 ATGAGAGCATCTCTTGAGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051566 ENSRNOT00000086936 3 1 1 60 17 13856928 13856946 AGTCAGAAACGAAGCAGAC 58 13856886 13856904 TTCACAGGTGTGATCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053933 ENSRNOT00000078389 2 1 1 60 17 46177017 46177037 TATGATGCTGTGCTACAAGTG 59 46176977 46176998 AGGTAGACATAGCATCTTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041779.2 ENSRNOG00000056851 ENSRNOT00000081147 2 1 1 80 X 139780431 139780571 GGTACTCAGTTTACTACGTATTCAG 59 139780608 139780627 AGTAAACTGACGCTGAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058431 ENSRNOT00000077881 2 1 1 60 X 96801692 96801710 CCACCTACAGGTAAAGCAG 58 96801733 96801752 CTTCTATGCCACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052001 ENSRNOT00000078876 1 1 1 60 X 104683493 104683515 GGAACGATACAGAGAAGATTAGC 59 104683535 104683553 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056858 ENSRNOT00000090437 2 1 1 60 X 15162432 15162455 AGGATACAGAGAAGATTAGCATGG 60 15162395 15162416 ATGCATCATAGATGTCTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051386 ENSRNOT00000089526 2 1 1 60 X 104127655 104127675 TGTTCTTGGCTGATCTAGGTG 60 104127615 104127636 CACATGAAGTGATGAACAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131024.1 ENSRNOG00000058001 ENSRNOT00000082630 1 1 1 80 3 170299824 170299845 TACACTACAGCCTACACTACAG 59 170299882 170299927 GTGTAGTGTAGGTGTAGTGTAGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054556 ENSRNOT00000082827 2 1 1 60 3 27527464 27527484 CAGGCTATGTCTATGCTTGTG 59 27527502 27527524 CTGTTAGGCTACTAATCGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056502 ENSRNOT00000079898 1 1 1 60 14 11337643 11337661 GAGAAGATTAGCATGGCCC 58 11337601 11337619 AATATGGAACGCGTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055165 ENSRNOT00000091591 2 1 1 61 4 22005649 22005667 CATGTGGGTCAGTAGGTGG 60 22005692 22005710 TCAGATGTTGGCAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056202 ENSRNOT00000085687 3 1 1 82 10 83735589 83735607 GACTGTCTACATGCTGGCT 60 83735653 83735671 AACCTGGTCCCTCATTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000074856,ENSRNOT00000057756 3 3 5 80 6 114780456 114783532 ACTTCAGAGGTTCCTCCAG 58 114780394 114780412 GTTGAGCAGAATCTCCGTG 59 Novel Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 3 1 1 75 14 99672249 99672270 ATTAGCCATTCTGACTGGTG 58 99672306 99672326 AACATCCTTACTCATCAGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 1 1 1 60 16 19954764 19954787 TTAGCTCATTTCCTGGTATGAC 58 19954808 19954826 CATGAGATCCACCACCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066116.1 ENSRNOG00000051710 ENSRNOT00000088083 1 1 1 60 9 3238364 3238383 ATCTCCACCACGATTCAGAC 60 3238406 3238424 TTACATGGGCTTTGGTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066116.1 ENSRNOG00000051710 ENSRNOT00000088083 3 1 1 60 9 3238227 3238246 AGGGACATATCTGAAGCACG 60 3238269 3238287 GCTTGACATAGAGCTTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004960.1 ENSRNOG00000053648 ENSRNOT00000090018 2 1 1 60 1 172822918 172822936 TATCTGCTCACCTCTGCTC 59 172822956 172822978 CACTAGGAGAATACAAACTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057878 ENSRNOT00000080539 1 1 1 60 12 2299876 2299896 CAGACTCGTCTTAAGTCAAGG 58 2299836 2299854 GTTTAGAGGCTCTAGCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362319 ENSRNOG00000061737 ENSRNOT00000081360 1 1 1 60 8 43661473 43661494 TTGCTATCTTCTTTGGTTCCCT 60 43661514 43661533 ATGGAGCTGACTGATGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053726 ENSRNOT00000078749 2 1 1 62 1 194926724 194926743 AAACATTGCTTGGAAAGCAG 58 194926681 194926699 AGTCACGATGATAGTGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000058604 ENSRNOT00000088265 2 1 1 60 2 198316045 198316065 ACTTGGAGGTATATTAGCAGC 57 198316087 198316105 TTGTCTGAAGGTGACTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.1 ENSRNOG00000055241 ENSRNOT00000081203 2 1 1 258 3 110540885 110540903 TACAGTCTCATCTGGCAGC 59 110541126 110541144 CTTCCTCTTCGTCTTCGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043248.1 ENSRNOG00000053919 ENSRNOT00000071451 1 1 1 80 19 26769573 26771482 GCTCAACAACGTAATGAAGTC 58 26771522 26771542 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 AABR07043248.1 ENSRNOG00000053919 ENSRNOT00000071451 2 1 1 81 19 26769573 26771482 GCTCAACAACGTAATGAAGTC 58 26771522 26771543 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 AC114363.1 ENSRNOG00000057545 ENSRNOT00000090574 2 1 1 83 3 8432154 8432174 TCTCACTCCTGGAATACTGAC 59 8432090 8432109 GAACAGGGCTCCCTTAGTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000061226 ENSRNOT00000079052 3 1 1 62 2 93815207 93815225 GTGCTTTCTTCAGCAACAC 58 93815250 93815269 GAGGCCATGTTACTGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029215.1 ENSRNOG00000045537 ENSRNOT00000073610 2 1 1 60 10 14957413 14957434 CTGCTCTACATAATGAGTTCCA 58 14957374 14957394 TTCTTGAGACAGGGTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 2 1 1 66 8 43835773 43835793 CTATGTGTCCATTGTCTGGTC 59 43835821 43835842 TGTCTGGAAAGCTCTGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044501 ENSRNOT00000069768 3 1 1 60 10 58847791 58847811 TGTCTGATCTTGGAAGCTGAG 60 58847832 58847851 CATCTCAACTCCATCCAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060507 ENSRNOT00000077385 2 1 1 62 1 282155556 282155577 CTGATGTTAAGGTTTGAGAGCT 59 282155515 282155533 GTAACTGACAGAAGTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053268 ENSRNOT00000088924 2 1 1 61 2 18273630 18273648 GAGAAGATTAGCATGGCCC 58 18273587 18273606 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119536.1 ENSRNOG00000046544 ENSRNOT00000073161 3 1 1 60 12 15974069 15974088 GAACTCACAGAGATCTGCCT 59 15974028 15974047 GTAGCACATGCCTTTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.1 ENSRNOG00000051446 ENSRNOT00000089630 2 1 1 80 7 142884371 142884820 AAGCATGTAAGTCGGGTCC 60 142884862 142884882 TACCAGATTGTCCAAAGACCA 59 Novel Rattus norvegicus 81 AABR07070456.1 ENSRNOG00000014383 ENSRNOT00000019269 2 1 1 122 8 70908968 70908987 TTCTGCTATGACCCAGGTG 59 70908864 70908882 TGTCTTCTGGAATTCGCCA 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000061848 ENSRNOT00000081635 2 1 1 60 14 112898441 112898460 CAATGAGGTTTATCCGAGGC 59 112898400 112898420 TCAGAATAATGTAGTGGCGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044645 ENSRNOT00000069912 1 1 1 60 2 253549412 253549430 AATGTGCCAGATCTTGCCT 60 253549370 253549389 TCCATTACAAACCATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039471.1 ENSRNOG00000047231 ENSRNOT00000075097 3 1 1 114 X 77655028 77655046 CATGCCTGAATGTGAAAGC 58 77654930 77654953 ATTATCATCTCGTACATCCCAG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000054110 ENSRNOT00000090821 1 1 1 60 17 82189673 82189694 GTTGAAGAAGATGATGTTCCCT 59 82189711 82189733 CTCATAAACCCTTGACCAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055547.1 ENSRNOG00000049883 ENSRNOT00000072038 3 1 1 97 7 5700135 5700155 ATTGACAGATGATCCTCAGCT 59 5700208 5700234 GGGTGAGGAAGATAATTATTAACCC 59 Novel Rattus norvegicus 81 AABR07007758.1 ENSRNOG00000046691 ENSRNOT00000075436 2 1 1 62 2 27324679 27324697 TAGTTCTGAGCACTGCCTG 59 27324635 27324653 CTCAGAGTTTGAGGACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016975.1 ENSRNOG00000053595 ENSRNOT00000077659 1 1 1 80 15 5652369 5652388 GTTTGTGAACTGCAAGTTCC 58 5652306 5652329 TTTCTTGGGTCTTTCTGATAGG 58 Novel Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 2 1 1 64 5 107288892 107288910 CATTTCCGATGTCCCTGGA 60 107288842 107288865 CAACTGGTGGCTTCTTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000056852 ENSRNOT00000084105 1 1 1 60 1 116740900 116740921 GACAACAGAAAGTCAAGAACAG 58 116740861 116740880 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061497 ENSRNOT00000090862 1 1 1 60 2 124471355 124471373 GAGAAGATTAGCATGGCCC 58 124471397 124471415 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052324 ENSRNOT00000083772 2 1 1 75 14 75229479 75229501 GTCCAAAGGTAGTGAGTTATCTC 58 75229536 75229554 GTATTGGATCGGGAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051665 ENSRNOT00000079693 3 1 1 61 3 51875189 51875207 TGTATGACTGCTGTGTCAC 58 51875146 51875168 GTAGACATAACCTCTTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057991 ENSRNOT00000084686 3 1 1 60 2 203106479 203106497 TTGGCTTCCTCTTTCTCCC 59 203106437 203106456 AGAAAGGTTACAGCTTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051994 ENSRNOT00000089864 1 1 1 66 1 228262110 228262128 ATGAGGTTTATCCGAGGCA 59 228262155 228262176 CCTGATATGGAATTTGCTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076586 3 1 3 82 13 75164268 75164286 TCTCTGACCCTTTCTGGTC 58 75164330 75171890 ATTTCAGTGGAGTTCATCCTC 58 Novel Rattus norvegicus 81 SCARNA3 ENSRNOG00000052521 ENSRNOT00000086149 2 1 1 62 1 53236728 53236748 CCAGCCATGTAGACAAATGAG 59 53236686 53236705 TTTATGTGGGACTGTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059537 ENSRNOT00000078018 3 1 1 60 1 105178697 105178716 GCCAATGAGGTTTATCCGAG 59 105178737 105178757 AGTCCAGTGAAACACTAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053613.1 ENSRNOG00000048921 ENSRNOT00000071786 1 1 1 60 3 116072613 116072631 AACACATGGAAACAACCCT 58 116072653 116072673 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000055902 ENSRNOT00000085824 1 1 1 60 14 17380813 17380833 ACTGTGTATGAAGCACAAGGA 60 17380773 17380792 TACCAAAGACATGCATGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052320 ENSRNOT00000085514 1 1 1 60 17 53056913 53056931 CCAAGGTCAAATAGGTGGT 57 53056952 53056973 AGGAGCCAATACATTCATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052068 ENSRNOT00000081871 3 1 1 62 1 176645962 176645981 AGAGAAGATTAGCATGGCCC 60 176646006 176646024 AAATGTGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061110 ENSRNOT00000078781 2 1 1 60 2 27725948 27725970 GATACAGAGAAGATTAGCAAGGG 59 27725910 27725931 CCTAACTTAATAAGCTGCAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054583 ENSRNOT00000079025 3 1 1 61 2 155488501 155488520 GAGAGGCTAGGTCTATGCTC 59 155488459 155488482 GTTAGGCTACTAATCATTCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059185 ENSRNOT00000078501 1 1 1 61 6 67720601 67720619 AACTTGTTGCATTTGCCTC 57 67720558 67720576 CACAGGAATCCTTTAGGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000061306 ENSRNOT00000082268 1 1 1 60 2 550693 550713 CTAGCTGCGAGAATTAATGTG 57 550735 550753 AGTGCGTTCATAGTGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360491 ENSRNOG00000006283 ENSRNOT00000008276 3 1 1 81 8 6749878 6749896 AACTTTAAGGCTTTCGCCA 58 6749814 6749832 CTTCTTTCGCCCTCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844 1 1 2 80 13 78982552 78985136 GTTCCTGAAGCAGACAAGG 59 78982490 78982508 TGTTCGTCATTACTGGCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054621 ENSRNOT00000089046 1 1 1 60 6 70169517 70169541 GACTATGTCTGTACTAAGTGTTCTG 59 70169481 70169502 AGTGTTAGGCTACAAATCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061065 ENSRNOT00000086781 1 1 1 60 14 7685828 7685850 AGTAGAGGTCAAGGGTATATGAG 59 7685790 7685811 TGAGCTTGTTTGTAGATTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053966 ENSRNOT00000083455 3 1 1 60 1 118905045 118905063 ACATGTGTCAATAGGTGCC 58 118905084 118905105 TTGGTCAGAATACTGATCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014722.1 ENSRNOG00000036377 ENSRNOT00000054495 2 1 1 60 14 28075148 28075166 TCTCAACCAGCACAGACTG 60 28075188 28075208 GACTCTCAAAGAGATACTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD101 ENSRNOG00000057952 ENSRNOT00000083652 2 1 1 60 1 22758922 22758942 AGTGATGACTTGTATTGTCGG 58 22758964 22758982 GACTAGCTGAATCTCACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054137 ENSRNOT00000090514 1 1 1 60 2 145570977 145571000 GATGGGTACTAAGTCATTTGTGAG 59 145571019 145571037 AGCTTAGCTATTGCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096353.1 ENSRNOG00000050136 ENSRNOT00000073324 1 1 1 60 1 256453646 256453664 TGTCCTTCTTCTCGATGGC 60 256453687 256453706 CTTGTCTAAGGCTTTGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054623 ENSRNOT00000085559 2 1 1 60 1 72342479 72342501 GGAACGATACAGAGAAGATTAGC 59 72342521 72342539 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049768.1 ENSRNOG00000057488 ENSRNOT00000088532 3 1 1 60 5 137125581 137125599 ACAAAGCAAGGACAGACAC 58 137125539 137125557 GGGAATGCAGATGAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055118 ENSRNOT00000086485 3 1 1 60 2 188059525 188059546 AAGACTTTGCTGATACACTCCT 60 188059567 188059585 TCTCCAATAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060415 ENSRNOT00000082959 2 1 1 60 4 176244869 176244891 CTTGCAAGTATAGCTGCTATGTC 60 176244911 176244929 AGACATGGCCTCTTAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054792 ENSRNOT00000082490 1 1 1 60 1 116729373 116729395 GACAACAGAAAGTCTAGAACAGG 59 116729335 116729354 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066529.1 ENSRNOG00000048462 ENSRNOT00000072501 1 1 1 80 9 10789390 10789410 CAGTTGGGAGTTAACAACCAC 60 10789451 10789471 CCAAGGTTTCTCCAACTCAG 59 Novel Rattus norvegicus 81 SCARNA2 ENSRNOG00000051850 ENSRNOT00000082978 3 1 1 61 2 211344060 211344078 TGATCAGATAGACGAGGCC 58 211344017 211344035 TCAGATCAGAATCGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061339 ENSRNOT00000087864 2 1 1 60 1 280816855 280816878 GATACAGAGAAGATTAGTATGGCC 59 280816818 280816837 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121415.2 ENSRNOG00000051581 ENSRNOT00000090449 2 1 1 80 2 178336417 178338343 ACTCCAGTTCAGAAACCTACC 60 178338384 178338403 AAGTAGAATCCAGCCTCCAC 59 Novel Rattus norvegicus 81 Rn60_9_0428.1 ENSRNOG00000046298 ENSRNOT00000022314 3 1 1 80 9 43159254 43159272 CTGGGCTCTGAAACATTGC 60 43145804 43159211 CAGATAGCAGACCTTGTGGT 60 Novel Rattus norvegicus 81 SNORA74 ENSRNOG00000058995 ENSRNOT00000082932 2 1 1 60 2 2478790 2478811 CTACCTAGGTTTCCTTGTACCT 59 2478751 2478769 CTATTGGCTGCTGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005633.1 ENSRNOG00000055297 ENSRNOT00000084934 1 1 1 60 1 190671979 190671997 AGTTCCTGGACGAGAACTC 59 190672021 190672039 GTTCTAGGTTGCACACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005633.1 ENSRNOG00000055297 ENSRNOT00000084934 3 1 1 61 1 190671981 190671999 TTCCTGGACGAGAACTCTG 59 190672024 190672042 TGAGTTCTAGGTTGCACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053389 ENSRNOT00000082434 3 1 1 66 5 42557919 42557937 GCAATGCCTATTCATTGCA 57 42557964 42557985 GCTGGTTTACTATATTCAGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072872.1 ENSRNOG00000028492 ENSRNOT00000029710 1 1 1 60 3 59516473 59516493 CTCCCTCTATCATCATGTCCT 58 59516515 59516533 GAACTCTCAGCTGTCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000083614 3 1 5 80 2 123754489 123757916 TTCGCAGGAACAATGTTCC 59 123757959 123757978 GGGTCATGTGATTTCCATGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060316 ENSRNOT00000079329 1 1 1 60 5 20882112 20882132 AGGTTATGTTTACACTCAGGG 57 20882152 20882172 ATGTTGGGTTACTACTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040652 ENSRNOT00000062405 3 1 1 60 12 39942387 39942406 TCAATCTTGTCTGATCTGGG 57 39942346 39942366 CTCCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058492 ENSRNOT00000081545 2 1 1 61 14 82341614 82341634 CGCCTCGTATAGTAACTTGTG 59 82341573 82341591 CTTCCCACAGACCTAACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000090521 2 1 4 81 1 49742754 49844397 AATCACCTGACAGTACAGAGTC 60 49742694 49742715 GGTCAGTTGTCAGTTCAAAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000053636 ENSRNOT00000083206 2 1 1 60 14 115409139 115409157 AAGAGGATGACCTTCCCTG 58 115409179 115409199 GCTACTCATATACCCTTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053173 ENSRNOT00000091876 1 1 1 60 14 33899778 33899800 GGAACGATACAGAGAAGATTAGC 59 33899740 33899758 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063621.1 ENSRNOG00000055827 ENSRNOT00000077815 2 1 1 60 6 37325270 37325288 AAAGTAAAGTTCGGGCTGG 58 37325311 37325330 TATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053169.1 ENSRNOG00000058767 ENSRNOT00000088395 3 1 1 105 3 94987837 94987856 TTTGACCAACGTAACCCAC 58 94987750 94987770 AAAGAGGAAGTGATGAGTCCT 59 Novel Rattus norvegicus 81 AC142154.2 ENSRNOG00000060459 ENSRNOT00000083650 2 1 1 80 1 83573478 83575347 AACTGAAGAAATACAAGGGAGC 59 83575385 83575406 CAATGGAGCATATGATGTTTGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000054969 ENSRNOT00000087399 3 1 1 60 14 7579675 7579693 TTACCCATTGTCCTCTGGA 58 7579633 7579653 CAGTTACTTTCTCACAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056513 ENSRNOT00000091585 3 1 1 60 2 128817936 128817954 ATGAAGAACGCAGCTAGCT 60 128817977 128817996 TGTCCATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051388 ENSRNOT00000085533 2 1 1 60 2 231309303 231309322 ATCAGTAGTAGGTGGCAGTG 59 231309344 231309363 TCCTAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 1 1 1 60 8 13223535 13223557 AAGTTGCTTCTGATGTCGG 58 13223581 13223599 TCCTGCTCATCATGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059980 ENSRNOT00000085577 2 1 1 60 1 258163155 258163176 AGACACAGATAATTAGCATGGC 59 258163116 258163135 GGAATCCTTCCTGAATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050282 ENSRNOT00000072389 2 1 1 80 1 198971939 198972072 GGCTGGATGATGAAGATGG 58 198972113 198972134 GTTCTTCAACCTCTATGGTCTC 58 Novel Rattus norvegicus 81 AABR07017745.2 ENSRNOG00000051843 ENSRNOT00000086842 2 1 1 85 15 30525791 30525941 TAATGTTTGGAGGAAGCAATGG 59 30525986 30526005 GTTCACAGTCAAAGAAGCCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055556 ENSRNOT00000085949 3 1 1 64 2 142743361 142743379 ATGTCAGTAGGTGGCAGAG 59 142743405 142743425 AGCTCTCCTACTATCATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030386.1 ENSRNOG00000047289 ENSRNOT00000071187 3 1 1 60 10 83650417 83650436 GCCTTGAACTCAGAGATCCA 60 83650458 83650477 TCTCATGCCTTTGATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000053665 ENSRNOT00000079107 3 1 1 60 12 39008092 39008113 GTTTGTTTCAGAGAAGGAAACC 58 39008134 39008152 GAGAACTCCAGCCTTTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.4 ENSRNOG00000053387 ENSRNOT00000091475 1 1 1 80 2 231943166 231943365 GATCCAACACTGTAAAGGAAGG 59 231943406 231943424 TCTTTCAGAAGACGGTCCA 58 Novel Rattus norvegicus 81 AABR07053179.1 ENSRNOG00000054519 ENSRNOT00000079990 3 1 1 80 3 95619617 95619640 AGATTTCACCTCACATGCGA 60 95619681 95619701 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 1 1 1 60 1 20332012 20332031 CGGAAGCAGGAGACATAGG 60 20331970 20331990 GCATCTGATAAGAAAGCAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051253.1 ENSRNOG00000056675 ENSRNOT00000090568 3 1 1 80 3 4139246 4140185 TACACAGCCTATAGTGGCA 58 4139184 4139207 GCCCTCATAGTAGAAGATATAGTG 58 Novel Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 2 1 1 61 2 78427451 78427471 TTGATGTGAAATGGCAGTCAC 60 78427357 78427428 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 3 1 1 61 8 42786943 42786964 CTTCTGTTCCTGAGCATCG 58 42786989 42787007 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 Gjd3 ENSRNOG00000051691 ENSRNOT00000084275 2 1 1 203 10 86890159 86890177 GATCATGCTGATCTTCCGC 59 86889974 86889992 TAGATGACGAACAGCACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052970 ENSRNOT00000085616 2 1 1 60 2 55825572 55825593 GAATGTGAGGGTGATCTATCTG 58 55825609 55825632 CTGAATCAACTGTGGAGATTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053557 ENSRNOT00000090085 3 1 1 60 10 72148042 72148062 ATCCAAACGTGTATCCTTCTG 58 72148084 72148102 CAGTCCTTGTCTTCCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059141 ENSRNOT00000087189 3 1 1 60 5 33274449 33274467 TCCGTCAAGGGTATACGAG 58 33274490 33274509 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044940 ENSRNOT00000070207 2 1 1 60 1 79664469 79664488 GCCATACAACCATGAAAGGG 59 79664428 79664449 AAACCAATCATGCTTAGCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0737.3 ENSRNOG00000053007 ENSRNOT00000091351 1 1 1 89 9 73682950 73686349 TATCATGGAGCTCAGGAGG 58 73682879 73682899 ACACTGTCCTTCATATCAGTG 58 Novel Rattus norvegicus 81 AABR07004947.1 ENSRNOG00000059184 ENSRNOT00000088291 2 1 1 81 1 171485357 171486064 CTGTGGAAAGAGGATCATGAG 58 171486108 171486126 TTCTCAACAGCAAAGAGGG 58 Novel Rattus norvegicus 81 SNORD121A ENSRNOG00000053973 ENSRNOT00000082337 3 1 1 62 5 57552856 57552877 TGATGTGATGATTTCCAAGCAC 60 57552815 57552836 GGAAACTCAGCAGTTAAATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000052763 ENSRNOT00000088796 1 1 1 60 2 95138748 95138769 TATGGTAGATTTGGAAAGCCTG 58 95138790 95138808 GGATGATTGATCCTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 2 1 1 61 1 158864586 158864604 CACCAACAATGGAGGAGTG 59 158864627 158864649 ACAGGTGACAACAGATACTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052196 ENSRNOT00000090582 2 1 1 60 2 3634751 3634769 GCACCTAGAGGAATTGCAG 58 3634709 3634728 TCTCTGCTACCTACTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017597.2 ENSRNOG00000054269 ENSRNOT00000077709 3 1 1 60 15 29097036 29097056 AGAGGACACATGGAAATTCAG 58 29097077 29097096 TTCCCTTCTGAAAGGGTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058944 ENSRNOT00000084801 1 1 1 60 3 154849477 154849495 TGATACTGCAGGGAGAGGA 59 154849435 154849453 GATAAGTGTGGGTCCTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114446.1 ENSRNOG00000059545 ENSRNOT00000001163 2 1 1 154 7 140608448 140608467 GAATGGCATGATCCTGAAGC 60 140608609 140608627 TAACTGTAGGGCACCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA40 ENSRNOG00000060664 ENSRNOT00000080742 1 1 1 60 5 128079482 128079501 CAAAGGCATGAAAGACAGGT 59 128079522 128079542 GTACAGTGAGTTGTTAGTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690910 ENSRNOG00000052269 ENSRNOT00000086405 2 1 1 65 X 139329935 139329953 GACCGAAAGTGAACGTCTC 59 139329888 139329907 GCTCCCTTGTTTGATTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047041.1 ENSRNOG00000048432 ENSRNOT00000072046 1 1 1 64 5 16959185 16959203 AAAGACTCCTAACGGCAGG 59 16959139 16959157 AAAGTGGCCTAAGGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000076576 1 1 2 80 13 84968735 84970075 GCAGTACAGGTATCAAGAACAC 59 84968676 84968694 CTAGTAATGCAGGGCACCA 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000060036 ENSRNOT00000091776 2 1 1 64 1 196649589 196649608 CCAATTGGAGTCCAGATGAC 58 196649544 196649562 TAGGAGAAGGCACAAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052375 ENSRNOT00000077954 1 1 1 60 1 35752554 35752572 CTGCTGCTTCACATGTGTC 60 35752512 35752531 CACTGAGCAAAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053336 ENSRNOT00000088400 2 1 1 60 3 60690290 60690308 CACAGAGAAGGTTAGCCTG 58 60690248 60690268 GTACCATACAAATTTGCGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055576 ENSRNOT00000079467 1 1 1 60 3 121401866 121401884 GCATGTCAATAGGTGGCAG 59 121401906 121401926 TTCATAGGTTAGAACGCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013566.1 ENSRNOG00000056490 ENSRNOT00000074243 2 1 1 80 2 244543020 244543047 GACTCAATGAGATCAAACCTAAGG 59 244543080 244543104 GAAGATATTTACTGGTCCTTTGAGC 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000053158 ENSRNOT00000090056 2 1 1 60 1 128534866 128534886 TCACTTTGGGAGTATATGCAG 58 128534826 128534844 TGTCTCCAATGTCCCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015737.1 ENSRNOG00000049420 ENSRNOT00000070952 3 1 1 60 14 73167602 73167621 AAAGTTTCCTCACAGAGTCC 58 73167644 73167662 GAGAGTGCCTGTCTTATCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.1 ENSRNOG00000048336 ENSRNOT00000070836 2 1 1 60 2 231875464 231875483 CTGCTGCTAATCTGCAACTC 59 231875505 231875524 CATCACCATTGCTAAAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054005 ENSRNOT00000080492 2 1 1 62 1 2720338 2720357 TACAGAGAAGACAGCATGGC 60 2720382 2720400 ACTATGGAACACGTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004971.1 ENSRNOG00000054215 ENSRNOT00000081955 3 1 1 80 1 172971930 172971949 GCAGTCACTTTGTTCTACGG 59 172971992 172972014 CACCACCTTGTTGTCTGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057932 ENSRNOT00000077420 1 1 1 60 14 114778099 114778121 GGAACGATACAGAGAAGATTAGC 59 114778061 114778079 TTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060855 ENSRNOT00000086295 1 1 1 60 5 133028741 133028760 TTCAGTCAAGGGTAAACGAG 58 133028783 133028801 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054412 ENSRNOT00000081393 3 1 1 61 5 159609534 159609556 GGAACGATACAGAGAAGATTAGC 59 159609576 159609595 ACTTCACGAATTTGCATGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060073 ENSRNOT00000078984 1 1 1 80 14 92640103 92640121 GATACCATGATCGAGGCGT 60 92640165 92640183 CATTTGGAGAAGCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056982 ENSRNOT00000088733 3 1 1 69 4 72423075 72423094 TGCTTTGGCAGTACATATCC 58 72423126 72423144 TAATACTTGCAAAGGGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054666 ENSRNOT00000090195 1 1 1 61 5 55823643 55823661 TATACGAGTAGCTGCGCTC 59 55823600 55823621 CCTACAATGGACATTAAGAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106932.1 ENSRNOG00000029083 ENSRNOT00000052241 1 1 1 60 4 152544378 152544396 CCATCGAGAGGAGAAACCA 59 152544418 152544438 ATAGTCCTTAACCACTACGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 3 1 1 67 1 92088380 92088404 TCTCTGTCATCTGTTCCTATGAG 59 92088335 92088353 AGAATGTGCAGGGTACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052768.1 ENSRNOG00000009952 ENSRNOT00000013190 3 1 1 89 3 74585588 74585607 ATTGCTTCCTATACTGGTGG 57 74585656 74585681 GACGTCTAATTTCATTCCACAG 58 Novel Rattus norvegicus 81 AABR07018058.1 ENSRNOG00000057750 ENSRNOT00000083365 3 1 1 60 15 37710963 37710983 CATCATCAGCATGGTTGTAGG 59 37710923 37710941 GTGGAAACCCATGATGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000054191 ENSRNOT00000089688 1 1 1 64 1 228362700 228362718 ATTTGCTGTGGACATGACC 59 228362744 228362764 GCTAGTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056618 ENSRNOT00000078724 2 1 1 60 20 38742452 38742470 GGCATTGTTCCGTGAAGAG 59 38742410 38742430 CTGGTTTGGAAGTTCTAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061817 ENSRNOT00000086901 3 1 1 60 13 94121979 94121997 GAGTTAGCTGCTGTGTCAC 59 94122021 94122039 TACACGTAGCCTACCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000061901 ENSRNOT00000086861 2 1 1 60 3 146447903 146447922 AAGCAGGATTTCGCTAACAC 59 146447945 146447963 TGATCACTACCGAACTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052213 ENSRNOT00000078295 1 1 1 60 6 56740878 56740897 CTAGAAGGGTTGTGGGTAGG 59 56740918 56740938 TCTTCTCTTCGCATCCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044089.1 ENSRNOG00000019773 ENSRNOT00000026767 1 1 1 80 19 57663761 57663779 TACGCAATAACCGTTTGGT 58 57662320 57663717 CACACCTTTCTCACCTGTG 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000052760 ENSRNOT00000085030 3 1 1 60 20 32094680 32094701 ATATCTGATCGTCCTCTATCCG 59 32094719 32094740 CAACTCCTAGTTCCAAAGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006504.1 ENSRNOG00000031086 ENSRNOT00000042738 3 1 1 60 1 237574911 237574932 CTGGCTGTGAACAATATAGCTG 60 237574951 237574971 CAGTTCCATCGTCTTTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060734 ENSRNOT00000085272 1 1 1 60 13 27326629 27326648 CAGGTAATGAGGCTGTATCC 58 27326588 27326606 AGACATGCCATTTCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060734 ENSRNOT00000085272 3 1 1 60 13 27326628 27326648 CAGGTAATGAGGCTGTATCCT 59 27326588 27326606 AGACATGCCATTTCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000058161 ENSRNOT00000080708 2 1 1 65 3 31204409 31204427 TTTGTTCAAAGTGTGGGCA 58 31204456 31204474 TTGTGGATGGCAAATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059946 ENSRNOT00000088106 1 1 1 60 20 14164658 14164676 GAGGAGAAGCTGTCTTCGG 60 14164616 14164634 GGAGGTTCTAGCAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064690.1 ENSRNOG00000060564 ENSRNOT00000092179 1 1 1 60 6 90683523 90683544 AGGTCTGTGATGTGTATTTCCA 60 90683484 90683502 GACATGGGTCTCAGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021355.1 ENSRNOG00000047120 ENSRNOT00000075129 2 1 1 60 13 67427940 67427959 TCCAGTGATGAAATCTTCCG 58 67427899 67427921 GTCTTATCTAGCTGTAACACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021355.1 ENSRNOG00000047120 ENSRNOT00000075129 3 1 1 60 13 67427937 67427957 CAGTGATGAAATCTTCCGGAG 59 67427897 67427920 CTGTCTTATCTAGCTGTAACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053830.1 ENSRNOG00000055829 ENSRNOT00000077755 3 1 1 60 3 129462925 129462944 GCAATGCTACAGAGAAACCC 59 129462966 129462985 GCAAGCATCTGAGAACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022014.1 ENSRNOG00000043772 ENSRNOT00000069039 3 1 1 77 13 102731776 102731794 TAAAGGCTGGACCTAGACG 59 102731717 102731735 GTAAAGGCCGGAGTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000059370 ENSRNOT00000089426 2 1 1 60 6 124125304 124125325 GAGAAAGACTGAACAACAGGTG 60 124125345 124125364 AACAATGAGTTCTGGGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054343 ENSRNOT00000088667 2 1 1 60 13 98915001 98915024 GATACAGAAGAGATTAGCATGACC 59 98914964 98914982 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000052115 ENSRNOT00000080700 2 1 1 60 10 56272303 56272321 TGATTCCCTCTCCAAAGGG 59 56272261 56272279 TTCTTCCAAGTTGCTACGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061397 ENSRNOT00000086684 1 1 1 60 5 119052481 119052501 CTGGGTGGTTATTTACTCTGC 59 119052441 119052461 CGTAATGACAAGGATCTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045463 ENSRNOT00000070730 2 1 1 60 10 76491621 76491639 TGGCTAATCCACAACCCAG 60 76491579 76491597 ACCCTGCTTAGCTTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047249.1 ENSRNOG00000036483 ENSRNOT00000054591 2 1 1 96 5 25214888 25214906 TGGAGTATTGTCAGCACAC 58 25214966 25214984 TATTTGGTTGTGAGCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047576.1 ENSRNOG00000048750 ENSRNOT00000075765 2 1 1 80 5 38019016 38019039 GAGATTTCACCTCACATGCG 59 38018955 38018974 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07029836.1 ENSRNOG00000052646 ENSRNOT00000079764 2 1 1 80 10 53922300 53923008 TGTCTCCTCAATTCAGAAGGG 60 53923229 53923249 AGTTTCAGGTTTAGGCTTGTC 59 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000060457 ENSRNOT00000081998 1 1 1 60 4 115681888 115681908 CCATAGAAACTGTGACTCCTG 58 115681927 115681948 GTGACTAAATTCATCCTGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD77 ENSRNOG00000060075 ENSRNOT00000085413 1 1 1 60 13 78854991 78855009 ATAGTTCAGCAGACGTGAC 57 78855031 78855051 AGATACATCAGATAGGAGCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055397 ENSRNOT00000089969 1 1 1 60 7 30801061 30801082 TTGGAATTAGGAGTTGGAATGG 59 30801100 30801121 CAATACCAGGTTGATACATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052436 ENSRNOT00000086037 2 1 1 60 13 35558717 35558738 GGAAGGATACACAGAAGATCAG 58 35558759 35558777 CTTCACGGATTTGCGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061368 ENSRNOT00000084326 3 1 1 60 5 148105204 148105224 GTAGCTGCAAAGGAGATAACC 59 148105164 148105182 TAGATCAGCCTTGCCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000054973 ENSRNOT00000090384 3 1 1 61 3 12011147 12011165 AATCCAGTGGTGAGCTGAC 60 12011190 12011208 CCACATGTAGGACAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053488 ENSRNOT00000085587 2 1 1 62 6 47841288 47841307 ATACAGAGATTAGCATGGCC 57 47841332 47841350 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060637 ENSRNOT00000088982 1 1 1 80 19 43403053 43403072 CCTGCTTTCCTTTGACTGTG 60 43403112 43403133 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002893.1 ENSRNOG00000056062 ENSRNOT00000087232 3 1 1 111 1 88516052 88516070 TTGTGTTTATCGGCCACAG 59 88513376 88515982 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 U6 ENSRNOG00000054015 ENSRNOT00000078245 1 1 1 60 10 49170477 49170496 AGAGAAGATTAGCATGGCCC 60 49170436 49170454 AATAAGGAGCGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000075961 3 1 2 74 2 157068880 157068899 AAGAGAAATTAGCCGCAGTG 59 157068440 157068458 AAAGTTGCCTCAGAAGAGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055571 ENSRNOT00000085498 3 1 1 60 3 34555964 34555985 CAATAGAGATAATGCAGGTGCG 60 34556003 34556024 CCTTTGTGTCACAGACTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015002.1 ENSRNOG00000056869 ENSRNOT00000080087 1 1 1 88 14 44556989 44557007 CGGTCGAGATCAAGAAAGG 58 44557061 44557083 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 SNORD74 ENSRNOG00000054347 ENSRNOT00000088715 1 1 1 60 13 78852757 78852777 TGAAGGTTATGTTGGTAGGGA 59 78852799 78852817 TGCCATCAGAATTGTTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044284 ENSRNOT00000069551 3 1 1 60 X 71782919 71782939 GTACCAGATCTCATGTGATCC 58 71782879 71782899 TGTCCCATTACTAACCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055625 ENSRNOT00000088922 3 1 1 63 1 251057885 251057903 ATGAGGTTTATCCGAGGCG 60 251057840 251057860 CTCAGTGTTGAGTCTAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061589 ENSRNOT00000083115 1 1 1 60 5 109253809 109253829 TGTTGTGTCACATATGCATCC 59 109253769 109253790 ATTAAGTACAGACATAGCCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.1 ENSRNOG00000058558 ENSRNOT00000085868 2 1 1 60 X 128298553 128298573 GCTTCTGGCTTAGTAGTTCTG 59 128298592 128298613 CTGGGAACTTGTTAGAATTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052543 ENSRNOT00000079016 3 1 1 76 13 49593486 49593504 TAGAGCCATTGCAGATGTG 58 49593428 49593446 AGAACAGAGTTTGGACGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051643 ENSRNOT00000078952 2 1 1 60 5 29570744 29570763 CTTGTTTCAGTAGTTGGCAG 57 29570703 29570723 TATAGGTCAGAACACCAAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052058 ENSRNOT00000082842 2 1 1 60 7 12619441 12619463 GGAACGATACAGAGAAGATTAGC 59 12619403 12619421 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059187 ENSRNOT00000091766 3 1 1 60 15 33275491 33275513 GATACAGAGAAGATTAGCATGGC 59 33275453 33275472 GAACGCTACACGAATTCGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060327 ENSRNOT00000083785 1 1 1 60 13 81388311 81388332 GTCACATGTATGTCAGTAGTGG 59 81388272 81388291 TGAGAACACTGAGGGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061581 ENSRNOT00000090289 1 1 1 60 X 144720355 144720373 TGAAGGCGATCTGACTGTG 60 144720313 144720332 GATCAACCGAATCAACCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.3 ENSRNOG00000051073 ENSRNOT00000076494 3 1 1 80 X 115601048 115606871 ATTCAAGATGGGTAATGTCCTG 58 115600989 115601012 GACATCAGATCTCATTACAGATGG 59 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000057114 ENSRNOT00000091740 2 1 1 60 18 47047087 47047107 AGTCAGTAATTGACACAGCCA 60 47047127 47047147 TCAGCCATCTTAAAGGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061873 ENSRNOT00000091692 3 1 1 60 18 11766652 11766670 TCGGTCAAGGGTATACGAG 58 11766610 11766628 AGAGATGGCTTGTTTGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055291 ENSRNOT00000079574 1 1 1 60 4 102866483 102866501 GCCACCTACAGGTAAAGCA 60 102866441 102866461 TTCTATGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051238.1 ENSRNOG00000057800 ENSRNOT00000091481 2 1 1 60 3 2267587 2267609 CAGTTTACCTGTCTATGAGATGG 59 2267624 2267647 GTTAATCCTGCCTAAGAGATAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689958 ENSRNOG00000055798 ENSRNOT00000091497 1 1 1 60 1 64486397 64486415 TCTCATCATCGCTCTCACC 59 64486439 64486457 CAGGAAGAAGTACATCGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096370.3 ENSRNOG00000060994 ENSRNOT00000088065 2 1 1 80 1 259684844 259685274 TGACCTAAGTCACTCTATGACC 59 259684785 259684803 CCAAACTGTACTTCGTGCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060313 ENSRNOT00000078449 3 1 1 60 7 98454730 98454748 CTCCTTGTACATCCCTCCA 58 98454769 98454790 GACTACTCATCCTCTATTCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053713.1 ENSRNOG00000056903 ENSRNOT00000089018 2 1 1 105 3 121884882 121884903 AACAAAGCAAGAGGAAGTTGG 59 121884970 121884988 GCAGAGGGAACCTTAAAGC 59 Novel Rattus norvegicus 81 AABR07063632.1 ENSRNOG00000029825 ENSRNOT00000044583 3 1 1 84 6 38006788 38006806 GGAATCCCTCATTGTGAGG 58 38006635 38006740 GTTCCAGACCAGAACACAG 58 Novel Rattus norvegicus 81 SCARNA21 ENSRNOG00000056350 ENSRNOT00000079660 3 1 1 67 3 93979994 93980012 CAGGTATGCACTGTTGTGG 59 93980043 93980061 ATTGTGAGGCTAGGACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019116.1 ENSRNOG00000048448 ENSRNOT00000073422 2 1 1 60 15 89800861 89800879 CACGGATGAACTGATCAGG 58 89800819 89800840 AGATTTCAAGGCATCAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055874 ENSRNOT00000077272 3 1 1 63 10 72895504 72895524 TTAACAGGACTGATTCTGCTG 58 72895461 72895479 ATAGTGGTGAGGGAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057786 ENSRNOT00000082109 3 1 1 62 6 127005752 127005774 CTTTATCCACAGAACAGATCCAG 59 127005796 127005814 GGTTTAGGCACATTGGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067649.1 ENSRNOG00000055155 ENSRNOT00000085339 2 1 1 60 9 56455020 56455038 CTGTTTCGCAAGACCAGTG 60 56455062 56455080 GAGTGATTGCTGTCATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034498 ENSRNOT00000052621 1 1 1 60 10 18117453 18117474 GCTACCAATCTCATCTGATTGC 60 18117414 18117433 CATCCAAACACTAACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037270.1 ENSRNOG00000048303 ENSRNOT00000073882 2 1 1 60 X 17683643 17683664 GAGAATATTCTTCCCTGGAGTG 58 17683604 17683623 CAAAGATCCTCTGAGAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056405 ENSRNOT00000084719 1 1 1 60 18 74993302 74993321 TGACCTTGAAGACGGTTCTC 60 74993341 74993362 AGTGAACTCATAAAGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032622.1 ENSRNOG00000051848 ENSRNOT00000086400 2 1 1 139 18 74006048 74006068 AGCTGAATTCAGTCCTCAGAG 60 74102608 74102626 TTGAACAGGACGTTAGTGC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041679 ENSRNOT00000063432 3 1 1 60 3 82292220 82292240 GATCCTGTCTGATTTCAGGAG 58 82292180 82292201 CTCTGCTTAGCTTCTACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000060546 ENSRNOT00000088896 1 1 1 60 X 123394027 123394047 GAGATACAGGTCATGCTTCCA 60 123394068 123394087 GCAGGTCTCATTGTAACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065601.2 ENSRNOG00000053458 ENSRNOT00000081560 3 1 1 133 6 136984868 136984886 AGGGTACTTGTCACAGCTG 59 136984746 136984766 AGTCAGCCAGAAGACAGTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000040532 ENSRNOT00000062285 2 1 1 60 7 52188824 52188846 CTCAGAAGCTAATTGCAGTTAGG 60 52188866 52188884 GTATCCCAGGTTGGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060257 ENSRNOT00000085753 3 1 1 73 7 58377038 58377056 ATGCCAGAGTAACGGAGAG 59 58376983 58377002 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032453.1 ENSRNOG00000038592 ENSRNOT00000058869 3 1 1 60 18 66103995 66104016 AAGTGTTTCTGTTGGGAATCTG 59 66103956 66103974 GTTGCTTTCACTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054895.1 ENSRNOG00000061679 ENSRNOT00000081623 3 1 1 80 3 173249478 173249498 TGGATCCTTCTCAGAAGAGTC 59 173241541 173249437 CCCAAATGTAGCCTATAGCG 58 Novel Rattus norvegicus 81 SNORA29 ENSRNOG00000059086 ENSRNOT00000088550 2 1 1 78 X 51188165 51188184 AGTGGCTATGTTTAAGGGCT 59 51188106 51188127 TCATATAGAGGAAAGTCAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000057490 ENSRNOT00000082371 2 1 1 60 10 55950916 55950934 GCTCTATTTCCTGGGAGGT 59 55950874 55950893 TATTCTAGGCTCTGCTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060577.1 ENSRNOG00000015328 ENSRNOT00000020546 1 1 1 60 4 81302199 81302220 TTCTTCCTCAAAGAGTTACAGC 58 81302238 81302259 CCTTCTCGTAGTTACTTTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000059514 ENSRNOT00000089562 2 1 1 60 X 113464788 113464806 TTGAAACCAAGAGCTCCCA 59 113464746 113464764 TGAGTCCCTTTATCGTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000051715 ENSRNOT00000089757 3 1 1 60 18 63622299 63622318 CTAGTCTGCTTAGCTCTGTG 58 63622258 63622276 TGGCATTACTATTGCCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006871.1 ENSRNOG00000053536 ENSRNOT00000082839 3 1 1 135 1 261464195 261464336 GAAATCTGCGAGAGGAGAC 58 261464435 261464453 GATTATAGCGGATGCCGTC 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058972 ENSRNOT00000089543 3 1 1 60 X 152670146 152670164 GGCAGTCCTTTGTTCATCC 59 152670188 152670206 AGGCATAGAACAGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017527.1 ENSRNOG00000047841 ENSRNOT00000075763 3 1 1 60 15 25280247 25280267 TTAAGATGCAGATTCCAGTCC 58 25280207 25280228 GGAGCTTGTTAGAAATGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019120.1 ENSRNOG00000049068 ENSRNOT00000075362 1 1 1 60 15 89995861 89995880 ACACGGATGAACTGATCAGG 60 89995820 89995840 GATTTCAAGGCATCAAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019120.1 ENSRNOG00000049068 ENSRNOT00000075362 2 1 1 60 15 89995861 89995879 CACGGATGAACTGATCAGG 58 89995819 89995840 AGATTTCAAGGCATCAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000051976 ENSRNOT00000078011 1 1 1 60 6 133775506 133775527 ATGATGACTAAATCTGCGAGTG 59 133775545 133775566 TGGAAAGCTGTATTCATCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000051976 ENSRNOT00000078011 2 1 1 60 6 133775516 133775536 AATCTGCGAGTGTTGTATGAG 59 133775558 133775576 ACCTCAGACTTGGAAAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057576 ENSRNOT00000078293 3 1 1 60 15 89135059 89135079 GATATGGAAGCATTGCAAGTG 58 89135099 89135119 TAGCACATGTCTACTTGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051961 ENSRNOT00000090690 3 1 1 60 4 165500347 165500365 GTGCATCAGTATGTGGCAG 59 165500305 165500323 CGTGGGTGAGAATACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053993 ENSRNOT00000089089 1 1 1 60 15 61654804 61654827 GGCTAAGATCAAGTGTAGTATCTG 59 61654845 61654864 AAAGAGACTCGGCTTTACGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054304 ENSRNOT00000088368 3 1 1 60 6 94133694 94133716 GATACAGAGAAGATTAGCATGGC 59 94133656 94133674 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043101.1 ENSRNOG00000055046 ENSRNOT00000084965 1 1 1 60 19 21049229 21049248 AAAGTCATCGTTCAGTTCCT 57 21049268 21049289 TCTCGAATTCACCAATGTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 2 1 1 82 10 28192461 28192479 GCCACTCCCTGTTAGATCC 60 28192524 28192549 TCAAACTGATGGAAATGCTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA2 ENSRNOG00000057109 ENSRNOT00000087653 2 1 1 60 15 79318849 79318867 CTCTCACTGAAGACCAGCA 59 79318807 79318825 GTTCTTTAGGCATCTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051864 ENSRNOT00000083230 2 1 1 61 20 50377325 50377343 GTGTCAGTAAGTGGCAGAG 58 50377282 50377300 GTTTACAGAGCAGAACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052060 ENSRNOT00000078488 3 1 1 60 5 70827948 70827966 ACATTGTGCTTCCGTAGGT 59 70827987 70828008 GTAAGTGTAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055101 ENSRNOT00000084346 1 1 1 60 15 66479586 66479604 GATGTGGATGCTGTGTCAC 59 66479625 66479646 TAGAAATAACCCGTTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Stil ENSRNOG00000057760 ENSRNOT00000081075 3 1 1 80 5 133822713 133823438 CCATTAGTGGGAATCTGGCT 60 133823479 133823499 GAACATGTATCTCAAGCAGCA 59 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000054611 ENSRNOT00000087480 2 1 1 60 15 85776137 85776159 AATACACTGTCTAGCCTCATAGC 60 85776178 85776197 GTTTGAATTTAGCCCTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052608 ENSRNOT00000077696 1 1 1 60 20 8024466 8024484 CGATGTAAGGGTTGACCTG 58 8024507 8024526 TATGAGGGAAAGTGAGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD93 ENSRNOG00000047430 ENSRNOT00000063262 3 1 1 60 4 7969293 7969314 GATGAGGACTCTAACCTGACTG 60 7969332 7969353 GCCTCAGGTAAATCCTTTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055470 ENSRNOT00000080483 3 1 1 61 20 45494474 45494496 GATACAGAGAAGATTAGCATGGC 59 45494516 45494535 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000060835 ENSRNOT00000086012 3 1 1 60 15 66966235 66966253 CTATGCAGTAGCCTCTTGC 58 66966275 66966295 CTCCCTCTTACCTTCCAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052891 ENSRNOT00000083867 1 1 1 60 20 51862798 51862817 TGTACTCTGAATTGCTGTCC 58 51862757 51862777 CCACTACCACAAATTATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053398 ENSRNOT00000080117 2 1 1 60 6 25261048 25261070 GTGTTGTTCTTGTATCATCCAGG 60 25261088 25261108 CTAGGATGAACAAAGGACTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060394 ENSRNOT00000092046 2 1 1 60 4 98579969 98579990 ACGATAGAGAAGATTAGCATGG 58 98580010 98580029 GAACACTTCACCAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058090 ENSRNOT00000088128 1 1 1 60 11 68597922 68597941 ATACCAGGATCAGGAAGGTG 59 68597964 68597982 CACATCCCATGTGCAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061919 ENSRNOT00000090008 1 1 1 60 6 70216462 70216483 CATGGTTGATTCTGATGATCTG 57 70216502 70216522 AAGGACAGTAAGGGAGAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058257 ENSRNOT00000080282 1 1 1 60 4 96741192 96741213 TTCTAAAGTCTGAAGGCTACTG 58 96741153 96741173 GATTTGTTTGTCCTTGGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059777 ENSRNOT00000091886 3 1 1 60 4 51986896 51986915 ATACAGAGAAGATCAGCACG 57 51986855 51986875 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000052933 ENSRNOT00000078542 3 1 1 60 19 46006548 46006567 GGCAAGACTTTAACAAGTGC 58 46006507 46006526 TACTGAACAATGAGCTCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055311 ENSRNOT00000077848 1 1 1 66 11 83848525 83848543 TTATCCATTGCACTCCGGA 59 83848477 83848495 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059168.2 ENSRNOG00000061080 ENSRNOT00000077289 3 1 1 80 4 6169482 6169502 GGAATATGCCAAATGGAAGAG 57 6169544 6180267 AAATGCACAACGTTCTGTG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000060170 ENSRNOT00000078238 2 1 1 60 7 74943578 74943597 CTCTCCATTCCAGATGTGCT 60 74943620 74943638 ACGCAGTTTAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057192 ENSRNOT00000089656 2 1 1 60 18 81672008 81672029 TTGATGAGTCTGATGAAGTTGG 59 81672048 81672068 TTAAATGGTGAGGGAGGAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA77 ENSRNOG00000052026 ENSRNOT00000084343 2 1 1 62 11 86897951 86897969 AGATTCACTCTGCACCTGG 59 86897995 86898013 TTGTTTCTCTGGCAGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.2 ENSRNOG00000055713 ENSRNOT00000078323 2 1 1 60 11 29026747 29026767 TGGTAGCTATGGTTATGGCTG 60 29026707 29026729 GCCATAAGACCAATATCTTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002008.1 ENSRNOG00000056036 ENSRNOT00000081213 2 1 1 80 1 64745842 64745860 CTGGACTCTACTCAGAGGG 58 64745902 64747540 GCAGTAGTTCTCAACAGAGAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057652 ENSRNOT00000078104 2 1 1 61 19 24845074 24845098 CAATACAGAGAAGATTAGCATGGTC 60 24845116 24845135 GAACGATTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055754 ENSRNOT00000085057 1 1 1 71 5 151099253 151099271 TGCTTCACAACACAAACAC 57 151099306 151099324 ATCTGCATGTCATCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060850 ENSRNOT00000084740 1 1 1 60 11 2227656 2227675 TGTCCCTATAGGTGTTGTGG 59 2227615 2227633 TTCTGCCACCTATGGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014123.1 ENSRNOG00000054053 ENSRNOT00000090361 3 1 1 98 14 1501066 1502814 TATAACGTGCAGAGTTCTGC 58 1500987 1501008 AGCTAAGCTTATACCAAATCCC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000052928 ENSRNOT00000077344 3 1 1 69 11 31688152 31688170 TTGACCTCTGTGATTTCCC 57 31688101 31688122 AAGTGTAATTTCCCACTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055294 ENSRNOT00000084194 2 1 1 60 10 46463417 46463435 ACAAAGGCAATGTCCTCAG 58 46463375 46463395 TTAAGGGCAACATATCTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058986 ENSRNOT00000089623 2 1 1 60 18 64463850 64463869 GCGCGATTATTGCTAATTGG 58 64463809 64463829 AGCAGGATGTTCTCTTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058986 ENSRNOT00000089623 3 1 1 61 18 64463850 64463869 GCGCGATTATTGCTAATTGG 58 64463808 64463829 GAGCAGGATGTTCTCTTAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052699 ENSRNOT00000083058 1 1 1 60 19 11151098 11151117 GCATAGTGGCAGTATTGCAG 60 11151057 11151078 CTTCTATTAGCAATAGCCTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056317 ENSRNOT00000080261 1 1 1 60 18 87575766 87575785 ACATGTGCATCAGAAAGTGG 59 87575805 87575826 GATCACAACACTGAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055216 ENSRNOT00000079125 2 1 1 62 3 163463273 163463291 AGAGAAGATTAGCATGGCC 57 163463316 163463335 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096370.2 ENSRNOG00000060047 ENSRNOT00000091116 1 1 1 80 1 259664663 259664682 AGATCCTTCTGTCTCAGAGC 59 259664519 259664623 CTAAGACTGGAATTGCCATCTC 59 Novel Rattus norvegicus 81 AABR07065768.2 ENSRNOG00000054688 ENSRNOT00000086301 1 1 1 123 6 140418647 140418665 AATCCCGACTGAGCATCAG 60 140416675 140418560 TGCTCCCATTTCCTCACTG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051703 ENSRNOT00000077383 3 1 1 60 9 17173730 17173748 TTGAGTCCAGGAGTTCTGG 59 17173688 17173706 CGAACTTAGTGCGAACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122630.1 ENSRNOG00000060740 ENSRNOT00000090086 3 1 1 60 4 41902708 41902727 TGTAGATGCAGACTCAGTGG 59 41902750 41902768 TAGAGTGACAGAGACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056590 ENSRNOT00000089710 2 1 1 60 7 80951073 80951093 TTTATGGAATCCATGGTCCCT 59 80951114 80951133 AGAAAGTCTGATTAGGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041962 ENSRNOT00000063715 3 1 1 60 10 10420232 10420254 CTACAGTCATATCACCATCACTC 58 10420274 10420292 CTGCTTAGCTTCCAAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051493 ENSRNOT00000082234 3 1 1 60 9 98635418 98635441 GATACAGAGAAGATTAGCATGAGC 59 98635381 98635399 GCATGCTTCATGACTTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051887 ENSRNOT00000084108 2 1 1 60 7 3872752 3872770 CAAAGAGGACAACCTTCCA 57 3872710 3872729 TACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059692 ENSRNOT00000081956 2 1 1 60 9 42296676 42296698 AAGTGGAGCTATACAGAGAAGAC 60 42296717 42296736 AGGTATTTGCATGGAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000058660 ENSRNOT00000086324 3 1 1 115 11 71799603 71799622 CCTTTAGATGTGGCACTAGG 58 71799698 71799718 TTGATCCCGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 2 1 1 60 8 42839607 42839628 TTCTGTTCCTGAGCATCGT 59 42839565 42839583 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC115384.1 ENSRNOG00000058613 ENSRNOT00000090425 3 1 1 86 8 43705624 43705644 TCCTATCAAGTCTGTTCCTGG 59 43705692 43705851 TAGCATGCAGACTGTTGTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000055607 ENSRNOT00000078606 1 1 1 60 6 76800704 76800725 ATACAGAGAAGATTAGCATGGC 58 76800665 76800684 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052621 ENSRNOT00000086674 3 1 1 60 11 23071752 23071773 CTATAAGTGTTGCAGATGTGGC 60 23071713 23071732 CTCTTCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000052120 ENSRNOT00000081392 2 1 1 60 6 133829664 133829682 CCGATGATGAGATCTGGTG 58 133829706 133829724 GATGTCTGGTTACTTGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015500.1 ENSRNOG00000057727 ENSRNOT00000089645 2 1 1 64 14 59811543 59811567 AAGCACTTTACTTGAGCAACTC 60 59811592 59811610 CTTTGGAGATTCTGGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063901.1 ENSRNOG00000004108 ENSRNOT00000005458 2 1 1 60 6 55085392 55085410 CCCTTCAAGTGAGACCCAG 60 55085432 55085452 ATGTTGTGGAGTCTACTGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051649 ENSRNOT00000083406 3 1 1 60 11 29660064 29660082 ACAAGTAGCTGTGTTCCCA 59 29660105 29660124 TTCCTACAATGGACCTTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063197.1 ENSRNOG00000051746 ENSRNOT00000087358 1 1 1 60 6 21709493 21709511 GGTGGGATGAGGATGTGTC 60 21709535 21709553 GCTGATGTCCTTTGAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.1 ENSRNOG00000018537 ENSRNOT00000024998 1 1 1 65 1 167685253 167685273 TGGTCTTGAGAAGTTTCTGTG 58 167685301 167685319 CATTGCTGTGGCAGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060151 ENSRNOT00000079213 2 1 1 60 4 52596417 52596435 GCATCAGTATGTGGCAGAG 58 52596375 52596394 TTCTTAGGTCAGAACAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076078 3 1 6 81 10 74861917 74876948 GTGGCTGAAAGATCAAGCA 59 74876992 74877011 CTTCCTGGGAAATCCTTCAC 58 Novel Rattus norvegicus 81 Nwd2 ENSRNOG00000051837 ENSRNOT00000079269 2 1 1 82 14 46150400 46150419 TAAAGCTGCTACCAAACTGC 59 46147631 46150356 CCTCGATAGCTGAGAACAGG 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000061528 ENSRNOT00000090930 2 1 1 60 9 79592801 79592819 AGTTGGAATAGGAGCTTGC 58 79592843 79592861 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111278.1 ENSRNOG00000056688 ENSRNOT00000088211 2 1 1 128 5 64717762 64717781 AGTCAGAATTCCACCCAAGG 60 64716498 64717671 AAAGGACCTTTCCCTGGAG 59 Novel Rattus norvegicus 81 AC124874.2 ENSRNOG00000057667 ENSRNOT00000090254 2 1 1 77 13 82125798 82125816 CTCTTTCTCCACATCCTCG 57 82125859 82125877 ATTTCACCTCACACCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052350 ENSRNOT00000079024 1 1 1 60 17 19781398 19781421 GATAAAGAGAAGATTAGCATGGCC 60 19781440 19781458 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119496.1 ENSRNOG00000053856 ENSRNOT00000088629 2 1 1 60 17 21644196 21644215 TCTTTCTGACTATGTGCAGC 58 21644238 21644256 AGGACAGTCTCGTCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010705.1 ENSRNOG00000032715 ENSRNOT00000046641 2 1 1 60 2 148262450 148262469 AAACCTGAAGCAACAGAACC 59 148262488 148262510 CTACACTGGTAGAATCACATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063287.1 ENSRNOG00000047968 ENSRNOT00000075505 3 1 1 62 6 27107005 27107026 TTGAGTAGAAGACACCACATCC 60 27106964 27106982 CGGAGACCACCTAAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060314 ENSRNOT00000092140 3 1 1 60 9 58970443 58970463 TATGCATTTGGTGGATAAGGG 58 58970482 58970503 ACTCTTGACTGAAGAGTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000077743 3 1 2 105 6 138536182 138536286 ATTTCAAAGCTGTCTCCTGTC 59 138536097 138536115 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000056829 ENSRNOT00000078339 3 1 1 62 17 1725274 1725292 CGAGGTGCAGTTATTGCTG 59 1725230 1725250 ATATTGCAAGTCATGATGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059018 ENSRNOT00000087304 2 1 1 60 7 18487 18505 ATGAAGAACGCAGCTAGCT 60 18526 18547 TGTCCATTATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012133.1 ENSRNOG00000047188 ENSRNOT00000073126 1 1 1 60 2 186932864 186932885 GAGAGCCTGAAGGATACTACTG 60 186932825 186932846 GGAGGACAATTTCTTCATTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027754.1 ENSRNOG00000053374 ENSRNOT00000078962 2 1 1 65 17 43835442 43835461 TGGACTTGAAATCCATTGGG 58 43835396 43835415 AAACATAAGCACGTAGTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057420 ENSRNOT00000087871 3 1 1 60 7 105747444 105747463 CAGATGGCTGTACTTTGCTC 59 105747403 105747422 TAAATCAGCTTTAGCCACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065598.1 ENSRNOG00000012677 ENSRNOT00000016905 3 1 1 60 6 136474093 136474111 AAACCAAGGAACCAGAGAC 57 136474131 136474153 CCTTTAGAATCAGTTGCTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.1 ENSRNOG00000022738 ENSRNOT00000031394 3 1 1 60 6 79149869 79149890 CGAACTTTGTGAAATACAGTCC 58 79149830 79149849 ATATCCACTGGGTTTGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064218.1 ENSRNOG00000053727 ENSRNOT00000089761 3 1 1 60 6 69619453 69619473 AATCCGGAAGAAGATTGAGCA 60 69619495 69619513 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036642.1 ENSRNOG00000050192 ENSRNOT00000071941 2 1 1 60 12 51674417 51674441 GAAGTAGATGGATTGTGTAGATGAG 59 51674381 51674401 ACTTGATAAGTGGCTAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055283 ENSRNOT00000080135 1 1 1 60 12 43916885 43916903 GTACATCAGTAGGTGGCAG 57 43916843 43916863 AATCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0879.6 ENSRNOG00000051194 ENSRNOT00000076682 1 1 1 87 10 88077266 88077285 TATCAACTGCTGAGGCTGAC 60 88076336 88077216 GATGTACCTCTTGCAGGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055199 ENSRNOT00000085538 3 1 1 60 8 113030346 113030364 TGCTGTATCACCCATAGGT 58 113030304 113030326 GTCAGAACACTGATAGTAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009538.1 ENSRNOG00000038752 ENSRNOT00000059203 1 1 1 93 2 102301587 102301608 CAATAAACCGCAAGGTTCAG 58 102301513 102301533 GTCAGCGCTGATTAATAAGTG 58 Novel Rattus norvegicus 81 AC117096.1 ENSRNOG00000057089 ENSRNOT00000089714 2 1 1 80 2 264755951 264755971 GCACAAATTGTCCACAAACAC 60 264753432 264755913 CAAAGGTCTCTGGAAATATGCAG 60 Novel Rattus norvegicus 81 AC103129.3 ENSRNOG00000055738 ENSRNOT00000077672 1 1 1 80 7 140171932 140171952 TTGGAACATGTCATCAAGGTG 59 140164535 140171890 TAGGTAGGCCTCACTCCTC 60 Novel Rattus norvegicus 81 AC103129.3 ENSRNOG00000055738 ENSRNOT00000077672 3 1 1 80 7 140171929 140171947 ACATGTCATCAAGGTGGCA 60 140164530 140171885 TGTTGTAGGTAGGCCTCAC 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000053138 ENSRNOT00000086632 2 1 1 60 9 77733386 77733404 GGCAGTCCTTTGTTCATCC 59 77733344 77733363 AAGCATAACACAGCTTTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000064626 2 1 2 119 10 87819466 87819484 TTGACCATCTACTGCAGCA 59 87820033 87820051 TTCACAGCAAGTTGGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012301.1 ENSRNOG00000055916 ENSRNOT00000081253 2 1 1 61 2 192463407 192463425 CAACAGAAATGCCCTCCTG 59 192463449 192463468 CTCTTTGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054551.1 ENSRNOG00000058278 ENSRNOT00000085848 1 1 1 110 3 159863547 159863565 TGCAAGTCTACATCCACCC 59 159863640 159863663 CGAGAATCCCACAAGGGAG 60 Novel Rattus norvegicus 81 AABR07040855.1 ENSRNOG00000051669 ENSRNOT00000086698 1 1 1 60 X 112311258 112311277 TTAGCCTGTGATGAGGAGAG 59 112311300 112311318 TACTTGCTCCTTGGGTCAC 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AC123358.1 ENSRNOG00000025626 ENSRNOT00000032928 1 1 1 64 12 50304025 50304043 CAAACAGCTCCACAACCAG 59 50304070 50304092 CACTTAGGATTGGCTTTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0890.4 ENSRNOG00000051098 ENSRNOT00000075835 2 1 1 81 10 89168717 89168735 AAAGGGATGAGGCAGATGG 60 89168219 89168676 TGTACTCTGGAAATACCTTCTCC 59 Novel Rattus norvegicus 81 ENSRNOG00000038427 ENSRNOT00000068104 1 1 1 80 14 78376283 78376303 AGAAGATTCCATGGTGTTCTG 58 78371995 78376241 TGTGCCTGAGTCTATCCTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060332 ENSRNOT00000092052 2 1 1 60 3 44774090 44774108 TCGGTCAAGGGTATACGAG 58 44774048 44774066 AGCTTCAGCAGGATTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013200.1 ENSRNOG00000030491 ENSRNOT00000042173 2 1 1 60 2 226826131 226826151 ACAACTTTGGTATTGTGGGAG 59 226826173 226826191 TTCTGAGTGGCAGTGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057922 ENSRNOT00000084909 3 1 1 60 8 72774555 72774574 CTGCCAAATTGGAACAACAC 59 72774514 72774532 CCTGAGTGTTACCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.2 ENSRNOG00000056233 ENSRNOT00000089462 1 1 1 75 1 198938320 198938338 CTGTGTTCCTAGCCTCTGG 60 198938377 198938395 GATTCTGCCTGTCCTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066144.1 ENSRNOG00000052886 ENSRNOT00000088289 2 1 1 60 9 3965763 3965781 TCCTGGATGATCTCTGCAG 59 3922104 3922124 GCATTGTCTCTTTCCTCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC103690903 ENSRNOG00000057926 ENSRNOT00000080612 1 1 1 60 X 130794484 130794503 AAAGAAGTATGAAGCCCTGG 58 130794443 130794462 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.1 ENSRNOG00000054716 ENSRNOT00000077800 3 1 1 80 14 85236635 85236658 GAAAGAGAAATTGCAGACAAGC 59 85236576 85236595 GCTGTTTGTCTTTCTTTGCC 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058530 ENSRNOT00000081656 3 1 1 60 8 126876707 126876725 GATGAAGAATGCAGCCAGC 60 126876748 126876767 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 2 1 1 60 9 4107534 4107554 CCTTTATTCAGGGATTCCTGG 58 4107576 4107656 TTGTATGACAGGGTCACAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07037645.1 ENSRNOG00000045689 ENSRNOT00000075081 1 1 1 60 X 26467687 26467705 AGAAGTTAGACCACAGGGA 57 26467643 26467663 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD14 ENSRNOG00000061656 ENSRNOT00000090754 1 1 1 60 8 44992080 44992099 AACCATTCGTAGTTTCCACC 58 44992122 44992140 CTCAGACATCCAAGGAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053742 ENSRNOT00000077114 1 1 1 60 8 1047272 1047294 GATACAGAGAAGATTAGCATGGC 59 1047314 1047332 AACAACAGAAAGCACCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053929 ENSRNOT00000085145 1 1 1 60 1 246973384 246973402 GTAGCTGTACCCAGGACTC 59 246973424 246973444 AGTAAGGAAAGAACAGGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053929 ENSRNOT00000085145 2 1 1 60 1 246973384 246973402 GTAGCTGTACCCAGGACTC 59 246973423 246973444 AGTAAGGAAAGAACAGGTCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053929 ENSRNOT00000085145 3 1 1 60 1 246973452 246973471 GCATCTGAATTCCTGTGTCG 59 246973492 246973512 GGATAGCTTGATAACCAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004269.3 ENSRNOG00000058004 ENSRNOT00000083062 1 1 1 226 1 135084242 135084260 CATACCAGATCCCAGCTGG 60 135084033 135084051 CTCCTAGGTGTAAGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053990 ENSRNOT00000087379 3 1 1 60 8 83924733 83924751 TGTCACTCTGTTGATTGCC 58 83924691 83924710 GAGGAGATCCACCTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044880 ENSRNOT00000070147 2 1 1 60 8 64903644 64903663 GATTTGGGAAGTTGAGCAGG 59 64903603 64903622 TTCACATCTTGTCTTCCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058555 ENSRNOT00000079055 3 1 1 60 8 85480385 85480404 GAACCTCCAAACAAGCTCTC 59 85480344 85480362 TTGGAAGCTTGACTACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052416 ENSRNOT00000081352 2 1 1 60 8 50872131 50872149 GCTGGATCACATGTGTAGG 58 50872173 50872191 CCACAGAAATGAGCATTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000059581 ENSRNOT00000090357 3 1 1 66 8 118196837 118196855 GCTCTGTCTATGACACTGG 57 118196789 118196807 GACTGGCTTCTGAAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105645.4 ENSRNOG00000059654 ENSRNOT00000077364 3 1 1 63 8 48802081 48802099 ATAGACTCCCTGGACAGAG 57 48802036 48802055 TAAGGCATACTTCGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053784 ENSRNOT00000085085 1 1 1 60 8 89757426 89757444 CACATCCGAGTCAGTAGGT 59 89757466 89757486 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128582.1 ENSRNOG00000051988 ENSRNOT00000091386 3 1 1 60 8 79862933 79862952 ACAACCAGTTCCACAAATGG 59 79862892 79862911 TTGTATCTTTGTGACCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070810.1 ENSRNOG00000061579 ENSRNOT00000082158 1 1 1 60 8 85489874 85489892 GAGATTGTCAACATTGCCC 57 85489916 85489934 TTCCAGAAAGTTCTCTGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070810.1 ENSRNOG00000061579 ENSRNOT00000082158 3 1 1 60 8 85489873 85489892 TGAGATTGTCAACATTGCCC 59 85489915 85489933 TCCAGAAAGTTCTCTGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110824.1 ENSRNOG00000014899 ENSRNOT00000020076 3 1 1 66 5 75986265 75986283 AATGTTGCAATGGAAGCCA 59 75986315 75986333 TATTGGCCACTTCCACTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA2 ENSRNOG00000053212 ENSRNOT00000080362 2 1 1 60 3 40419842 40419863 CAAGCAAATGCCTAAAGAACTG 59 40419881 40419902 TCTAGTGAAGTCCAGAATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052557.2 ENSRNOG00000057935 ENSRNOT00000078456 1 1 1 60 3 61623276 61623296 GCTGTCGTAAACTCATTACCT 58 61623236 61623254 CCAAGGTGTCATAAAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550609 ENSRNOG00000054481 ENSRNOT00000079810 3 1 1 80 3 167185268 167185289 GAATCCTTCTCAGAAGAGTCTC 58 167185005 167185229 TCCCAAATGTAGCCTATAGCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059849 ENSRNOT00000080107 2 1 1 63 3 74710741 74710763 GGAACGATACAGAGAAGATTAGC 59 74710700 74710721 ACACTTCACGAATTTGAGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 1 1 1 77 14 31003064 31058230 GAATTTCAAGAAGTCCGGTG 57 31003006 31003025 GCACAACATGTAGCTATGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 3 1 1 78 14 31003065 31058231 AGAATTTCAAGAAGTCCGGT 57 31003006 31003025 GCACAACATGTAGCTATGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031168.1 ENSRNOG00000055612 ENSRNOT00000085903 3 1 1 82 18 3015967 3015987 ACACTCGAGATTTCTGTTTCC 58 2900539 3015923 TTTCCATTGCTCAGCAGTG 59 Novel Rattus norvegicus 81 AABR07046713.2 ENSRNOG00000061676 ENSRNOT00000080044 1 1 1 101 5 2739369 2741228 CTCTTCAGGACGTCTGAGC 60 2741293 2741311 CTGGACTATCTCCTTGCCG 60 Novel Rattus norvegicus 81 AABR07031253.1 ENSRNOG00000058026 ENSRNOT00000080420 1 1 1 80 18 5913997 5914506 GGGTATCCAGAAGGAAGCC 60 5913935 5913955 AGACCATGTAGATGTCTTCCG 59 Novel Rattus norvegicus 81 AABR07014897.2 ENSRNOG00000053882 ENSRNOT00000092190 1 1 1 80 14 36969984 36970004 ACCGAGATTGTAGGTGAAAGG 60 36970041 36972082 AATGTATCCTCCTGATGTACTCTG 60 Novel Rattus norvegicus 81 AC127076.2 ENSRNOG00000059601 ENSRNOT00000077387 2 1 1 82 5 5056097 5056116 AATTCGTGCTGCAGAATCAC 60 5056158 5064254 TGCTGTTATCTCGAACATAAGC 59 Novel Rattus norvegicus 81 AABR07046830.1 ENSRNOG00000051477 ENSRNOT00000079045 3 1 1 139 5 8611717 8611738 GTAGACTGTAGAAGGAATGCCA 60 8611837 8615209 ACTTAAGTGGGTCCACTCTC 59 Novel Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 2 1 1 65 4 84936196 84936214 TTGGAACAACTGGTCAGCT 60 84935889 84936170 ACAACTGAGAATGAGAAGATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015510.2 ENSRNOG00000054521 ENSRNOT00000091036 1 1 1 80 14 60349482 60350772 CTTGGAAGAACAGGTTGGA 57 60350813 60350834 GAGCAAAGGCATTGATATTGAG 58 Novel Rattus norvegicus 81 AC128394.3 ENSRNOG00000059861 ENSRNOT00000087902 2 1 1 116 1 12777067 12798724 CCTTGAAGCCACGATATGC 59 12776969 12776990 AAACTCACCTTCAATACACAGG 59 Novel Rattus norvegicus 81 AABR07030034.1 ENSRNOG00000056642 ENSRNOT00000086672 2 1 1 80 10 63551056 63551075 CCTATCTCCTGATCACCTGG 59 63548721 63551015 TATATGGGTCCTGGAAGTACG 59 Novel Rattus norvegicus 81 AABR07060920.1 ENSRNOG00000054587 ENSRNOT00000090082 1 1 1 81 4 100861391 100862288 CTAACACTATGCACTGCCT 57 100861328 100861346 ATTTGATGGAATGCTGGGT 57 Novel Rattus norvegicus 81 AABR07047309.1 ENSRNOG00000061158 ENSRNOT00000086860 1 1 1 104 5 27673678 27690325 TTGTCAAGGCTTCTCTTCAG 58 27673593 27673611 TACCTGAGTCTGGGAAGTG 58 Novel Rattus norvegicus 81 AABR07015783.1 ENSRNOG00000054226 ENSRNOT00000081410 3 1 1 82 14 76153087 76153107 TGAAATCAACCATGGACTCTC 58 76145820 76153043 CATTCCCGGTGACTTTGAG 59 Novel Rattus norvegicus 81 AABR07061237.1 ENSRNOG00000055832 ENSRNOT00000088100 3 1 1 82 4 111238463 111238483 AGGAAATGGGAACGAGATACC 60 111238521 111242919 GGAATATGTTTCATAGTAGCCACTC 60 Novel Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 1 1 1 71 10 78686097 78686117 ATATCCACATGGAGACATCTG 57 78686150 78687016 ATGTAGCTGACACGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC109660.1 ENSRNOG00000052427 ENSRNOT00000079555 1 1 1 80 14 83082377 83083593 GAACACAGACCAAAGCCAC 59 83083636 83083655 GAAGAGCAGAGATTCTGGGA 59 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000087564 3 1 2 81 4 117655197 117661816 TTTCTGAAAGACCTGAATCCAG 58 117655137 117655156 AAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07016056.2 ENSRNOG00000060971 ENSRNOT00000084512 1 1 1 60 14 92967859 92967877 GGAATGCTTTGAAGCAGGA 59 92961100 92961118 AAGGTGTCCTTCCGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061382.2 ENSRNOG00000054709 ENSRNOT00000091643 2 1 1 81 4 120130204 120132212 TGAGAGCAGGAGAAGATGC 59 120130141 120130162 TGAATTTGAGCTTATCTCAGCG 59 Novel Rattus norvegicus 81 AABR07048478.1 ENSRNOG00000060139 ENSRNOT00000090293 1 1 1 80 5 77979857 77979881 AAGATCGATAGATCCTGTTATGGAG 60 77978893 77979823 CTTCTTAGTTCACTTGAGACCTG 59 Novel Rattus norvegicus 81 AABR07016558.1 ENSRNOG00000054704 ENSRNOT00000082916 3 1 1 98 14 103713329 103713347 TCTCCTTACGGCTTCAACC 59 103712517 103712536 AGTACATTATCGCTGAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.8 ENSRNOG00000061458 ENSRNOT00000090210 3 1 1 174 10 93185054 93185074 CTCACAGAAGAGGAGATTGAC 58 93188124 93188147 CGTCTAGTTCAAGAATAAAGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048900.1 ENSRNOG00000061469 ENSRNOT00000078686 3 1 1 106 5 96379010 96379028 TAGTCCTACTGAAGCTGCA 58 96393167 96393186 TTGTTCATTCAGTTGACCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.5 ENSRNOG00000056079 ENSRNOT00000080627 1 1 1 83 10 93260404 93262713 CATGTACAAGAGTAGGATGGT 57 93264524 93264543 TCGCCGATATCAATCTTCTC 57 Novel Rattus norvegicus 81 AABR07030568.6 ENSRNOG00000056632 ENSRNOT00000085367 2 1 1 80 10 93273074 93274765 GTGAAGAACTTCAAAGGAGGG 59 93274804 93274825 TGATTCCAGTTTGAAACCAGTG 60 Novel Rattus norvegicus 81 AABR07001006.1 ENSRNOG00000060323 ENSRNOT00000085639 3 1 1 86 1 32661258 32661276 CCACAGCAGCTCTACAGAG 60 32661324 32662154 GAGAATGTTCCAGGAAACCTG 59 Novel Rattus norvegicus 81 AABR07001010.1 ENSRNOG00000057164 ENSRNOT00000087059 2 1 1 60 1 33068585 33068606 AAGTTCCTAAGGATGGTACCAC 60 33061947 33061966 CTTCTGTATCGCTCAGAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC128967.2 ENSRNOG00000054781 ENSRNOT00000091730 1 1 1 87 4 156963354 156963373 CCTGATGGTTCATCAATGCA 59 156965848 156965866 CTCTTCCTGCAGGACTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030699.1 ENSRNOG00000053652 ENSRNOT00000083512 1 1 1 60 10 100410540 100410561 AAACCAGATTTACCTTTCCACC 59 100411697 100411716 ATTCTGAACCGTCTGACAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001018.3 ENSRNOG00000055826 ENSRNOT00000084492 3 1 1 80 1 33722236 33722256 AGCAAGATTTCCTTGACATGG 59 33722295 33723034 ACAAGGATTCTCTGTTCATGTG 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 2 1 2 62 4 157753872 157753890 CTGCGTTCTTTCCATCCAC 59 157753916 157754150 CAGGGCTACTGAGAAACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001019.1 ENSRNOG00000054169 ENSRNOT00000090610 1 1 1 80 1 34013294 34013314 CAAGGTACCAAGAATTGAGGA 58 34011888 34013252 ATGCAGATGAAAGACCCTC 57 Novel Rattus norvegicus 81 AABR07030793.1 ENSRNOG00000059335 ENSRNOT00000081753 1 1 1 60 10 104841904 104841922 CTCTGCTCTTCCTCTTCCT 58 104839172 104839196 TCTGGTCCTATGAGTAAATCTTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001054.2 ENSRNOG00000057357 ENSRNOT00000086733 1 1 1 80 1 35965854 35965873 AGTTTACCAGGAGACCAGTG 59 35924780 35965812 GAAAGTGACCCATGATGAGC 59 Novel Rattus norvegicus 81 AABR07001068.1 ENSRNOG00000058077 ENSRNOT00000081636 2 1 1 80 1 37059739 37059758 GATATGTCTGGTTGCCATGG 59 37059801 37162358 AGGAAGAATGACACCTGGT 58 Novel Rattus norvegicus 81 AABR07017208.2 ENSRNOG00000061006 ENSRNOT00000090768 3 1 1 80 15 17937277 17944372 GCCTATGACAGGATTGTGC 59 17944416 17944434 CTGAAAGTCAAAGACGCCA 58 Novel Rattus norvegicus 81 AABR07030880.1 ENSRNOG00000057341 ENSRNOT00000078771 2 1 1 81 10 107900930 107900948 GGAAGCAGACCTTCCTCTC 60 107902152 107902171 AATTCGTCCTGGCTAGACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030890.1 ENSRNOG00000053005 ENSRNOT00000078183 2 1 1 85 10 107999834 108000073 GAAGTAGCTCCAGCTGGAC 60 108000122 108000140 TCTGCTGACAAACTGTCCA 59 Novel Rattus norvegicus 81 AABR07001207.1 ENSRNOG00000054466 ENSRNOT00000082710 2 1 1 171 1 38830151 38835275 CTGCAGTGCAGAGATTCAC 59 38829998 38830016 AGGTGCTGTAGAAACTCCA 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086932 2 1 3 84 1 38864275 38864293 TCGTGAAGCCAAGAAACAC 59 38859657 38864228 ATACAGAGGAGTGTCACAGC 59 Novel Rattus norvegicus 81 LOC102548428 ENSRNOG00000054173 ENSRNOT00000079775 1 1 1 80 15 23984836 23985078 GGACTCTAATGGCAATATTGCA 59 23984777 23984799 CTAGAATTCCAAGATGTCCTCAC 59 Novel Rattus norvegicus 81 AABR07017540.1 ENSRNOG00000058949 ENSRNOT00000086339 3 1 1 80 15 26257431 26264485 GCTAGATGTCAAGGAACATGG 59 26264526 26264545 AAGCTTGTGTTCTCTGTCAG 58 Novel Rattus norvegicus 81 AABR07017814.1 ENSRNOG00000058542 ENSRNOT00000089808 2 1 1 80 15 31308672 31308817 GATACATTATTTCCTGGGAGGTG 59 31308855 31308875 GAGTCTCCTTCAAAGACAGTG 58 Novel Rattus norvegicus 81 AABR07062833.1 ENSRNOG00000053723 ENSRNOT00000084382 1 1 1 80 6 11094351 11094783 GTTACTCTGCAACATCTACTTGAG 60 11094822 11094840 GCCAGGCTGTTAATCTGTC 59 Novel Rattus norvegicus 81 AABR07017868.3 ENSRNOG00000055476 ENSRNOT00000080194 1 1 1 80 15 32020045 32020063 TCATGCAGAGGGACATGTG 60 32020104 32020346 CATTACATCCAGACAAAGCCAG 60 Novel Rattus norvegicus 81 AABR07031724.1 ENSRNOG00000061564 ENSRNOT00000087492 3 1 1 76 18 29732435 29732456 GTTCTAACAGGATACCATTGCT 58 29724900 29724918 TTTCTCCCAGATCCTCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062915.1 ENSRNOG00000056572 ENSRNOT00000077527 2 1 1 80 6 14599350 14599368 GCATGTTCCAAGTATGGGT 58 14599410 14603294 TCATAAGGGATGAAACCTCAG 57 Novel Rattus norvegicus 81 AABR07049884.1 ENSRNOG00000054370 ENSRNOT00000084152 1 1 1 99 5 142429261 142429279 TTCCTGTGGCAGACATCTC 59 142429340 142433580 TCATGCTGCTTCCTTTATCCT 60 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000085288 3 1 2 81 5 143189505 143194660 GAAATGTCCCAGGAATCCA 57 143194705 143194723 AATTCCAGAAGTGAAGGGC 58 Novel Rattus norvegicus 81 AABR07063250.2 ENSRNOG00000061045 ENSRNOT00000087766 2 1 1 97 6 24260043 24260061 GACTCTGGAATGCACATCG 59 24264389 24264407 TGATGTGGCAGTTTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063286.1 ENSRNOG00000058557 ENSRNOT00000078845 2 1 1 80 6 27030468 27030490 CCAGTCTGGTCTTGAATTTATGG 60 27030529 27032211 AGCTTTGAATATTGGGAGCG 59 Novel Rattus norvegicus 81 AABR07050017.2 ENSRNOG00000059632 ENSRNOT00000079596 3 1 1 81 5 148495216 148495963 TGGGAGGATGATGAGAAGTG 59 148495154 148495172 CCTGTGCAGACTACTCACC 60 Novel Rattus norvegicus 81 AABR07032123.1 ENSRNOG00000057282 ENSRNOT00000088498 3 1 1 80 18 47924646 47924664 AGTCAGCAGAGACTTTGGA 58 47923386 47924605 CTGGAGTTCTTCTCCTTTACTC 58 Novel Rattus norvegicus 81 AABR07018124.1 ENSRNOG00000051452 ENSRNOT00000077399 3 1 1 80 15 41408953 41408971 CAGAACCCAGAGATAAGGC 57 41409013 41409728 ATAATAACACCTTCCATGGGC 58 Novel Rattus norvegicus 81 AABR07050134.1 ENSRNOG00000057126 ENSRNOT00000087947 3 1 1 63 5 153015118 153015136 AATCGACATCTCCTGTGTC 57 153014605 153014623 GCAGACCTCACCAAATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102547734 ENSRNOG00000056918 ENSRNOT00000084448 1 1 1 82 15 42203180 42203198 GGTGACCACACCAGTAGAG 59 42203241 42208404 GAGAAGTATTTGCTCCACATGG 60 Novel Rattus norvegicus 81 LOC102547734 ENSRNOG00000056918 ENSRNOT00000084448 3 1 1 88 15 42194620 42194638 GTTGCAGGCTGCTAAAGAC 60 42194688 42203171 CTTCCCAAAGTGAATCCTGTG 59 Novel Rattus norvegicus 81 AABR07063565.1 ENSRNOG00000054675 ENSRNOT00000089202 1 1 1 60 6 35451407 35451427 TTGATGAGTGCAGAATGAAGC 59 35451367 35451386 GCTTGGAGGAAGACTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001799.1 ENSRNOG00000052286 ENSRNOT00000084574 2 1 1 80 1 57999560 58094546 AGGCTTAAAGAATCCCTTCTAGG 60 58094586 58094604 AAGCTGATTGGCACTTGTC 59 Novel Rattus norvegicus 81 AABR07050274.1 ENSRNOG00000053597 ENSRNOT00000086353 3 1 1 102 5 158973649 158973668 TGTGTTCTGTTACAAGCTCC 58 158971330 158971348 GAACAGAACAGGCCAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC095289.1 ENSRNOG00000054836 ENSRNOT00000082256 1 1 1 95 18 55937338 55938626 AGAGCTCAGAGTACACAGAG 58 55937262 55937281 CGTACCTTCAGATTTGAGCT 58 Novel Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 3 1 1 69 1 70055223 70055241 GTCGTCTTCATGCCTTTCC 59 70055272 70071745 GGCTGGTACAATATGCATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063724.1 ENSRNOG00000057498 ENSRNOT00000090534 1 1 1 206 6 44009277 44009295 CCCAAACTTGCGGAAATCC 60 44007982 44009107 TTAAAGGAGTCAGCAGCCT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07018457.1 ENSRNOG00000051407 ENSRNOT00000078684 2 1 1 77 15 58726317 58726337 ATGTTGCAGTCAGGAAATCTG 59 58727284 58727302 ATTCCAATAGCGCCTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028 3 1 2 93 5 167081200 167081218 TGTCTCTGTGAAGGGATCC 58 167084932 167084950 CATAGTCAGGCTTCTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002674.1 ENSRNOG00000059266 ENSRNOT00000090105 2 1 1 94 1 80191600 80191618 GTTTGGTATCAGGCAAGCG 60 80190671 80191543 CCATCTCACCTCTTCTCCTG 59 Novel Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000089212 2 1 2 81 18 68552207 68552735 TTACCAGTCAGGAGGACAC 58 68552144 68552163 TGGTAAGATCTGCTAGGGTG 59 Novel Rattus norvegicus 81 AC107190.1 ENSRNOG00000056442 ENSRNOT00000085238 1 1 1 83 6 50866563 50866584 GCTTTGAACTGAGATATGTCAC 58 50866628 50869461 GTTCCTAGAGCTGTGAGGA 58 Novel Rattus norvegicus 81 AABR07032590.1 ENSRNOG00000051545 ENSRNOT00000083403 2 1 1 63 18 72704228 72704246 AAAGGTGCGACACAAACTC 59 72707562 72707581 ATCATCAGCCTTCGATCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032590.1 ENSRNOG00000051545 ENSRNOT00000083403 3 1 1 64 18 72704228 72704246 AAAGGTGCGACACAAACTC 59 72707563 72707582 CATCATCAGCCTTCGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032640.1 ENSRNOG00000061277 ENSRNOT00000090840 3 1 1 80 18 75549013 75549814 CCTTCAAGACAGGTCTTCCT 59 75549854 75549875 GATGCCTGTCCTCTTATTACTG 59 Novel Rattus norvegicus 81 AABR07002902.1 ENSRNOG00000056429 ENSRNOT00000081905 1 1 1 80 1 88632221 88634886 CTACAGAGACCGAAGGACTC 59 88634929 88634947 GAAGGACCATGGCATTCAG 59 Novel Rattus norvegicus 81 AABR07064230.1 ENSRNOG00000054247 ENSRNOT00000092098 2 1 1 81 6 70217556 70218068 GCCAATAAAGTGTCACCGT 59 70218110 70218131 AGCTGTCTTCCTGTATTAACTG 58 Novel Rattus norvegicus 81 AABR07064264.1 ENSRNOG00000059058 ENSRNOT00000090871 2 1 1 80 6 71837408 71837426 CTATGGCCTGAGTGAGACC 59 71835332 71837366 GAGTCTGAGGTAGCATCTTCC 60 Novel Rattus norvegicus 81 AABR07019334.1 ENSRNOG00000061865 ENSRNOT00000086389 3 1 1 80 15 100149036 100149054 AGAAACAACGGACTCCAGG 60 100145172 100148996 TTCAGGAGATCTGAGTATCTTGC 60 Novel Rattus norvegicus 81 AABR07064468.1 ENSRNOG00000057565 ENSRNOT00000091064 2 1 1 81 6 81618393 81622264 GAGAATCACCTGGCTTGGA 59 81618330 81618348 CTCGCTTGGGTAAACTGTG 59 Novel Rattus norvegicus 81 AABR07051403.1 ENSRNOG00000055854 ENSRNOT00000079302 2 1 1 60 3 10543044 10543064 ATCACTTCCTGTCTCTGAGAG 59 10543085 10544090 ATTTGAGTTGGCAAGTCAGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07019387.1 ENSRNOG00000056606 ENSRNOT00000091078 1 1 1 80 15 103505131 103505507 TCTAGAAACTCAAGGTACCCT 58 103505549 103505567 TCTTTCAGTCAACTGGGTG 57 Novel Rattus norvegicus 81 AABR07003024.1 ENSRNOG00000053072 ENSRNOT00000082613 3 1 1 81 1 93454490 93454508 TCACAGAAGACCATCTTGC 58 93397949 93454447 GTTTATCCTGCTCTGTTTCAG 57 Novel Rattus norvegicus 81 AABR07019437.5 ENSRNOG00000057052 ENSRNOT00000087221 3 1 1 86 15 105481062 105481870 ACTTCAATGTGTATGCTCCG 58 105481916 105481937 GATCAACAGCTTAACGATTTCC 58 Novel Rattus norvegicus 81 AABR07019437.6 ENSRNOG00000060490 ENSRNOT00000091703 1 1 1 80 15 105499752 105499770 CTTGGGAGCTAAACCAACC 59 105499813 105500934 ACTAAGGGAGACCTGTAGGT 59 Novel Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 2 1 1 60 6 97206236 97206257 AGATACGTGCCATCTTATTGTG 59 97205315 97206218 TTCTGCTCAGAATGTTCAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019811.1 ENSRNOG00000055623 ENSRNOT00000084827 1 1 1 85 13 4230315 4240820 AATGTAACATGGACAGCAGAG 58 4240862 4240885 CAGTCTATTCCTTCAAGATCACAC 59 Novel Rattus norvegicus 81 AABR07051787.2 ENSRNOG00000061836 ENSRNOT00000085091 2 1 1 80 3 21442537 21442556 AAGACAAGGAAATGGTCCTG 58 21441773 21442495 CTGAGCAAACTCTTCTCCAG 58 Novel Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 3 1 1 61 13 24516795 24520522 CCATCTCCAGTTAATTCAAGGT 58 24516755 24516776 GAGGATTCCATTCATCTTCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033492.1 ENSRNOG00000059033 ENSRNOT00000090241 1 1 1 80 11 24042632 24042653 CCATATGAGAGGTAACAGTTGG 58 24034358 24042591 CTTGTACGTCCATCCACTG 58 Novel Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 1 1 1 68 1 97084719 97089829 AAGGGATCACAAGACTGGG 59 97084669 97084687 AAGTTTCGAGCCTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020802.1 ENSRNOG00000061545 ENSRNOT00000078594 2 1 1 80 13 41370722 41370857 CCAACCAGATGAGGAGAGC 60 41370901 41370919 ATCTTCCACTTAGCCCAGC 60 Novel Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000079890 1 1 2 81 1 104282221 104282239 TACAGAGCAAGACTGGCTG 59 104286914 104286934 CATCTTCCTTCATGTGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033645.1 ENSRNOG00000054634 ENSRNOT00000083195 2 1 1 94 11 33093545 33093564 TATAGAAGCTGGTGCATGGG 60 33084752 33093488 CCTTGGTTCTCCACCAGAG 60 Novel Rattus norvegicus 81 AABR07033757.1 ENSRNOG00000056134 ENSRNOT00000081755 2 1 1 192 11 38881563 38888600 GAGTGACGTCTTAAGAAAGAAGTC 60 38888751 38888769 TTTCCAGTTGTGTCCAGCT 60 Novel Rattus norvegicus 81 AABR07052327.1 ENSRNOG00000054061 ENSRNOT00000078922 2 1 1 96 3 47689079 47689097 TTAGCTGCTCTTAGCAAGC 58 47689156 47690627 CTTCTTGATCTCACGCTGAC 59 Novel Rattus norvegicus 81 AABR07003398.1 ENSRNOG00000060326 ENSRNOT00000089731 3 1 1 68 1 108917994 108919136 CTTGAATAAGGGCATCATCCT 58 108919163 108919184 GGAATGCAATGAATCATCTTGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07033867.1 ENSRNOG00000057495 ENSRNOT00000077704 3 1 1 90 11 41467576 41468485 CCAAGCTGAAGAATGAATTTCC 58 41468535 41468554 GCTCTATGCCGATAATGCTG 59 Novel Rattus norvegicus 81 AABR07052388.1 ENSRNOG00000054733 ENSRNOT00000077132 3 1 1 81 3 50657395 50657414 AGGACAATTGCAAGATGCAG 59 50657455 50657757 CATTAATTCCGCAGATCTTCCC 60 Novel Rattus norvegicus 81 AC113858.1 ENSRNOG00000053686 ENSRNOT00000078479 2 1 1 69 13 68937795 68937813 CAAAGCTGATGCTCACCAG 59 68937846 68942324 GTGGAGACCTGAGAAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021411.2 ENSRNOG00000052913 ENSRNOT00000083498 2 1 1 84 13 70840677 70840695 CAACACTGAGACAAAGTGC 57 70840741 70841176 CTTCTTACCCTTGTTGAAAGC 58 Novel Rattus norvegicus 81 AABR07034073.1 ENSRNOG00000057150 ENSRNOT00000078314 1 1 1 81 11 51208820 51212232 TACACCAAGGAGTGTTCCG 59 51212276 51212295 CTGGCTGCTCTTTGTATGTG 59 Novel Rattus norvegicus 81 AABR07034239.1 ENSRNOG00000059216 ENSRNOT00000078294 3 1 1 91 11 57994607 57995056 ATAGAATGCTACGGAGGTCAC 60 57994536 57994554 TTGATCGTTCGCATGTTCG 59 Novel Rattus norvegicus 81 AC108574.2 ENSRNOG00000057903 ENSRNOT00000086178 1 1 1 80 11 60046755 60046773 AAACGTGGAAGAAACGCTG 59 60046815 60048935 ATTTAGCCTCATGCTTGTCTG 59 Novel Rattus norvegicus 81 AABR07034293.2 ENSRNOG00000052632 ENSRNOT00000089170 3 1 1 83 11 62943409 62949854 GGTAGACAAGAAAGGTGCT 57 62943344 62943364 TGTGAACCTTTCTTGTCTACC 58 Novel Rattus norvegicus 81 AABR07034455.2 ENSRNOG00000057133 ENSRNOT00000088184 1 1 1 80 11 72479524 72479543 TTCATGAAGCCTTGACACTC 58 72479585 72489146 TGACATGGAGAGTCTGACAC 59 Novel Rattus norvegicus 81 AABR07021614.1 ENSRNOG00000061660 ENSRNOT00000086408 2 1 1 81 13 81592096 81592114 TGCATACAGGATCAGCCAG 60 81592159 81593997 GTCACAGTCGTAAGGGAGG 60 Novel Rattus norvegicus 81 AABR07034550.1 ENSRNOG00000056641 ENSRNOT00000082937 3 1 1 168 11 76634537 76636984 GAAAGCAGAACATGAGTTCAG 58 76646687 76646706 TGTATTGTATCCGAGGAGGA 57 Novel Rattus norvegicus 81 AC120076.1 ENSRNOG00000060422 ENSRNOT00000080870 3 1 1 80 11 76808378 76812605 ACCTCATTGGACTATTGAAGC 58 76808318 76808338 CTAGAAGCTGACTAATTCGGT 57 Novel Rattus norvegicus 81 AC141937.2 ENSRNOG00000060226 ENSRNOT00000081046 1 1 1 151 6 127386248 127386266 GTTCTTGTTGCCTGTGGAC 59 127385350 127385620 CAAATGATGTTCCCGGCAC 60 Novel Rattus norvegicus 81 AC141937.2 ENSRNOG00000060226 ENSRNOT00000081046 2 1 1 152 6 127386249 127386267 AGTTCTTGTTGCCTGTGGA 60 127385350 127385620 CAAATGATGTTCCCGGCAC 60 Novel Rattus norvegicus 81 AABR07034573.1 ENSRNOG00000051670 ENSRNOT00000087988 3 1 1 60 11 79133872 79133891 TGTGTCAGAAACATCCTAGC 58 79134098 79134119 TATAATTTCTCCTGAGCTGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021734.1 ENSRNOG00000056636 ENSRNOT00000077414 3 1 1 97 13 88601401 88602443 AGAAACAAGCATCAAGGTGG 59 88601323 88601341 AAGCAATTCATCGTCCCAG 58 Novel Rattus norvegicus 81 AABR07004189.1 ENSRNOG00000056064 ENSRNOT00000089979 1 1 1 80 1 129531123 129531142 ATTTGGAGGTGGAATGAAGG 58 129531470 129544595 ACTTGTCTCCTCTTTCTTGC 58 Novel Rattus norvegicus 81 AABR07004221.2 ENSRNOG00000057208 ENSRNOT00000081129 2 1 1 80 1 130549449 130549468 TCAGAAACCACAAACTTGGC 59 130547750 130549406 ACGGTGATCGATTCTTCCT 59 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000081827 1 1 2 81 13 100072347 100072454 GAAATGTGTTTAAGGTGGTCTC 58 100072496 100072514 ATGATGGTCGTGCAAAGTC 59 Novel Rattus norvegicus 81 AC121220.1 ENSRNOG00000058990 ENSRNOT00000089556 1 1 1 86 6 135259896 135259914 TAACGCTAGTTGGAGCCTG 60 135259959 135262765 CTGGAGACTTAAATTACACAGCAG 60 Novel Rattus norvegicus 81 AABR07065590.1 ENSRNOG00000061911 ENSRNOT00000087252 1 1 1 88 6 135984148 135984167 GATGACCTTGAACTGAACCC 59 135983760 135984097 CTTTGCAGGGAACACTGTG 59 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 1 1 2 140 1 131386721 131431805 GGTGATACTACAACCACTGAC 58 131385851 131386619 CAACTTGTCATAGCCTGGC 59 Novel Rattus norvegicus 81 AABR07035008.2 ENSRNOG00000054841 ENSRNOT00000087032 1 1 1 80 12 3250087 3251120 AAGAGGAGGACTTCCTCCA 59 3251163 3251182 TTTCGGATACAGCAATCCAC 58 Novel Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 1 1 1 60 13 107491208 107501001 CAGACGAGTGTATGCTGGT 60 107501025 107501043 TACACAAACCGTCACACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024468.1 ENSRNOG00000060607 ENSRNOT00000089982 3 1 1 123 16 535766 569367 CCTATGAAGGCCTTATAGATTCAC 59 535666 535685 AGACCCGAAAGAGATTTCCC 60 Novel Rattus norvegicus 81 AABR07053293.1 ENSRNOG00000053538 ENSRNOT00000082187 3 1 1 61 3 97221347 97221367 CTGATAGCCCAACTCAAAGTG 59 97221385 97223571 TGTCTCTGCTATAGACTGTTTCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07024546.1 ENSRNOG00000053192 ENSRNOT00000086069 3 1 1 80 16 4707597 4723588 AGGGAGTACAGATACAAGCTG 59 4707537 4707556 AGGAAGAACTCCTTGGATCC 59 Novel Rattus norvegicus 81 AABR07024648.1 ENSRNOG00000051628 ENSRNOT00000081641 1 1 1 81 16 10163980 10163999 GGATAAGCCAGTCATTCCCT 59 10164311 10165603 CAGTGTCTTGCCTTGACAG 59 Novel Rattus norvegicus 81 AABR07024652.2 ENSRNOG00000060767 ENSRNOT00000091708 2 1 1 80 16 10321385 10321407 CCCATCAATATAACCAAGACGAC 59 10320797 10321350 GAGTAGAATATTGATCGCTCTTCC 59 Novel Rattus norvegicus 81 AABR07053479.1 ENSRNOG00000058690 ENSRNOT00000082123 3 1 1 80 3 109331596 109331617 CCTTTCCCTCTTCTAATTGGTC 59 109331656 109335473 GTGGACACGTTCATAGATCAG 59 Novel Rattus norvegicus 81 AABR07066567.1 ENSRNOG00000052346 ENSRNOT00000082318 2 1 1 80 9 11588895 11588913 GAGATGGGACCACATCACC 60 11588952 11589330 CCATCAAGTTCCATAGGATTTGAC 60 Novel Rattus norvegicus 81 AABR07004703.1 ENSRNOG00000051996 ENSRNOT00000085870 3 1 1 82 1 151211012 151211031 AGGAATTCCAAGCTACAGGG 60 151211072 151216429 GCATCCTGTTTGTTTAGCTAGAG 60 Novel Rattus norvegicus 81 AABR07035717.1 ENSRNOG00000060527 ENSRNOT00000077381 3 1 1 89 12 21370916 21373046 CATTGTCCATGCACTCAGC 60 21370845 21370863 TGATCTCCTGTGTCCTCCA 60 Novel Rattus norvegicus 81 AABR07053635.2 ENSRNOG00000058578 ENSRNOT00000087002 2 1 1 86 3 117811760 117817804 CAAGTTTAGGGAGTCCCAGAG 60 117811694 117811712 TATCCAGCTGGTGATGCAC 60 Novel Rattus norvegicus 81 AABR07053635.2 ENSRNOG00000058578 ENSRNOT00000087002 3 1 1 88 3 117811762 117817805 TCAAGTTTAGGGAGTCCCAG 59 117811693 117811711 ATATCCAGCTGGTGATGCA 59 Novel Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 1 1 1 65 3 120257560 120259518 CATCTCATCATTGCTAGACGA 58 120259540 120259563 CAGAATGAATAACTCAGCTCTAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066829.2 ENSRNOG00000061319 ENSRNOT00000083121 3 1 1 83 9 18191749 18191767 CTTCTGGTGGAGACATGGA 59 18187311 18191702 TCACCCTGAGAACTTGGAC 59 Novel Rattus norvegicus 81 AABR07035780.5 ENSRNOG00000058675 ENSRNOT00000091067 1 1 1 80 12 22350957 22350977 GGAAATTTCAGTGTCCCTCAG 59 22351019 22351205 ACTGCAGAGGGATATTGGT 58 Novel Rattus norvegicus 81 AABR07004868.2 ENSRNOG00000057308 ENSRNOT00000082386 1 1 1 85 1 163459611 163459629 CTTCTGAGGAGATGGCCTG 60 163459678 163460810 TTGGAAGCTCTCCTGAGTG 59 Novel Rattus norvegicus 81 AABR07024875.1 ENSRNOG00000053348 ENSRNOT00000080272 2 1 1 78 16 20362912 20362930 CCAGGAACAGCTCTGATCC 60 20361555 20361574 ATGAACACCATAGCATGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053850.1 ENSRNOG00000059311 ENSRNOT00000081306 2 1 1 96 3 130962637 130962656 CCATTTCCTTGCTTCCTACG 59 130962711 130964788 TATCATGATCCGGTAGATCTGTC 59 Novel Rattus norvegicus 81 AABR07035813.1 ENSRNOG00000058330 ENSRNOT00000090379 1 1 1 80 12 23130473 23130491 GTGCTGGTTTATGCTTCCT 58 23130534 23132395 AAGGTCCCTTTAATACCAGC 57 Novel Rattus norvegicus 81 AABR07025698.1 ENSRNOG00000054658 ENSRNOT00000090945 3 1 1 60 16 46539924 46539947 CTATGACAAGGATTTCATCCAGTG 60 46539887 46539909 TCTCCAGATAGATGAGGAAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005752.1 ENSRNOG00000057137 ENSRNOT00000080259 3 1 1 100 1 195866330 195866348 CACCACCCAGGAGAAAGAG 60 195865511 195866268 TGCTTCCATCTCTTTCCTCTG 60 Novel Rattus norvegicus 81 AABR07036304.1 ENSRNOG00000057802 ENSRNOT00000085196 3 1 1 68 12 37106467 37106485 GTAGTCACTGAAGTTGCCT 57 37117530 37117548 ATACTAACGTCCAGGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 2 2 2 82 1 200364478 200364499 CTGTAAAGTCACCAAGATTGCT 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 1 1 1 60 9 49134036 49134054 AGAAGACACATCAAGCCAC 58 49134078 49135004 GAAGCTGTTGAGATCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067507.1 ENSRNOG00000055791 ENSRNOT00000081317 2 1 1 61 9 50095275 50095293 CCATGATCATGGGACTCTG 57 50094681 50095253 CAGGTTAGACAATCCATATCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07026037.1 ENSRNOG00000054950 ENSRNOT00000085711 2 1 1 104 16 60393442 60393463 CTGCCAAAGAAATCAATCACAC 59 60393525 60394897 TGAAAGTGTCATTCATGCAGAG 59 Novel Rattus norvegicus 81 AABR07036406.2 ENSRNOG00000056161 ENSRNOT00000087400 3 1 1 109 12 42076173 42076191 TTGTTGTGGAAACCAAGCT 58 42074576 42076103 CAACATGTCCTGATTGTAACTG 58 Novel Rattus norvegicus 81 AABR07026044.1 ENSRNOG00000061769 ENSRNOT00000078296 3 1 1 87 16 60771665 60771683 ATCAGCACATTTCCCATGG 58 60771731 60773885 TAGATCTTTCTTAGCAACCTCC 57 Novel Rattus norvegicus 81 AABR07005950.1 ENSRNOG00000059014 ENSRNOT00000085634 1 1 1 85 1 208478513 208478533 CCTTCATTTGGGTGAGAACTG 59 208478575 208501197 GTGTCAGACCCTTTAATGTTATCC 60 Novel Rattus norvegicus 81 AABR07054562.1 ENSRNOG00000053747 ENSRNOT00000078224 2 1 1 85 3 160585258 160585276 ATGGTCACAAGGTGGAGTG 60 160585323 160587015 CATCCCTAGGATTGGCTAGAG 59 Novel Rattus norvegicus 81 AABR07067775.2 ENSRNOG00000058413 ENSRNOT00000078208 2 1 1 81 9 63362280 63364518 CCACTTATCACTATGAAGTGCAC 60 63362221 63362239 TGCTCTGCTTCATGTTCCA 60 Novel Rattus norvegicus 81 AABR07036556.1 ENSRNOG00000056283 ENSRNOT00000088941 3 1 1 80 12 48061809 48063815 GAGAACCTCATCTATACGTATATCG 58 48061753 48061772 GCTGGAGGTATAGATTCCCA 58 Novel Rattus norvegicus 81 AABR07026361.1 ENSRNOG00000053572 ENSRNOT00000089518 2 1 1 81 16 74061964 74061982 TGTTCCTGTCTGACCTGTG 59 74060939 74061919 TCTTGGACCAGTAGGAACC 58 Novel Rattus norvegicus 81 AABR07068044.2 ENSRNOG00000060393 ENSRNOT00000088594 1 1 1 72 9 79324990 79325008 TTTGAGTAGACACCCGAGG 59 79323671 79323689 CTTTGCCCTAGAATGGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068044.2 ENSRNOG00000060393 ENSRNOT00000088594 2 1 1 73 9 79324990 79325009 ATTTGAGTAGACACCCGAGG 59 79323671 79323689 CTTTGCCCTAGAATGGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068044.1 ENSRNOG00000059671 ENSRNOT00000083737 1 1 1 80 9 79357295 79357313 AACTGGGTGAAGAGTGGAG 59 79357354 79357838 CACTTCATGAGACGGTTATCAG 59 Novel Rattus norvegicus 81 AABR07037151.1 ENSRNOG00000055212 ENSRNOT00000082890 2 1 1 86 X 14551943 14551961 TATGGTCTCACCTCTTGCC 59 14552011 14552992 AACATTGACCTGGAGAGGC 60 Novel Rattus norvegicus 81 AABR07022162.1 ENSRNOG00000053159 ENSRNOT00000088762 1 1 1 80 13 110479889 110480842 CTGAACAGAAGTTTCTGGCT 58 110479828 110479846 CACTGCTCTCACAGAACTC 58 Novel Rattus norvegicus 81 AABR07026499.3 ENSRNOG00000061042 ENSRNOT00000077817 2 1 1 74 16 79078627 79078645 CTGAAACAGCCAATTGGAC 57 79074478 79074497 CTCAACTTTGACTGGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 2 2 2 80 3 177390151 177390169 AAGCAGGAGAAGTGGATCC 59 177390211 177392118 CTCTTTCCCTTCTTCCTCAGG 60 Novel Rattus norvegicus 81 AABR07037899.1 ENSRNOG00000056843 ENSRNOT00000091339 3 1 1 86 X 35198780 35198799 TTGACCCAGATATTGTGGGA 59 35197115 35198734 CTGGTATTTCCAAATTGGGAGG 59 Novel Rattus norvegicus 81 AABR07055146.1 ENSRNOG00000051476 ENSRNOT00000079578 1 1 1 161 7 100353 100371 CCTTGCTTCCTACAAAGGA 57 93955 93973 AAAGTTCTGTGGATCGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000087267,ENSRNOT00000083877 3 2 2 89 X 35975147 35975165 CAGGAGAAGATTGGATGGG 57 35973353 35975095 GATAGACCATGGCACTTCTG 58 Novel Rattus norvegicus 81 AABR07038174.1 ENSRNOG00000057678 ENSRNOT00000089445 1 1 1 62 X 41879023 41879042 TGCTCCTGGTAATAAAGGCT 59 41876408 41876429 CCAGTACATAGGGTATAACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038556.1 ENSRNOG00000058617 ENSRNOT00000091796 2 1 1 80 X 54912049 54913157 CCATGAAATCAAGGAGTACAAGG 60 54911991 54912013 GTTTATATGGAACCAGAAGCTGG 60 Novel Rattus norvegicus 81 AABR07068248.2 ENSRNOG00000060101 ENSRNOT00000079973 1 1 1 80 9 92547735 92548020 CCAAGGACCAACAGATCCA 59 92547673 92547693 AAGAGCCACAGTAGAGTTCAG 60 Novel Rattus norvegicus 81 AABR07055801.1 ENSRNOG00000060675 ENSRNOT00000079790 3 1 1 171 7 10168415 10169144 TTCAGCAACCTCTACGTGG 60 10169278 10169297 GGATGTGTCCTCCATACAGG 60 Novel Rattus norvegicus 81 AABR07026579.1 ENSRNOG00000054303 ENSRNOT00000090737 3 1 1 123 16 84545738 84545757 CTTCAAGTTCTGAGGACCCA 59 84545842 84545967 AATGTAGTCCATGGAAGCCC 60 Novel Rattus norvegicus 81 AABR07026668.1 ENSRNOG00000060488 ENSRNOT00000089987 3 1 1 135 16 88852443 88852461 ACATTGCAGTTGCAATGCA 60 88851165 88851183 TGCACTAGCTGAGTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006689.1 ENSRNOG00000056566 ENSRNOT00000079361 2 1 1 80 1 248405052 248405070 GAAGCTGAGCTTACAGCAC 59 248405113 248412511 TTCAAGCAAACTCTGAGCTG 59 Novel Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 1 1 1 65 X 96466494 96469360 GGTAGTTCATCCATTACAGCT 58 96466449 96466467 ATGGTTGCTTCATGGACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.2 ENSRNOG00000056699 ENSRNOT00000077294 3 1 1 81 7 23246525 23246548 CCGATTGACTACCTATATTCACCA 60 23183847 23246491 CATCTCCTTTATCATAGATGTTGGG 59 Novel Rattus norvegicus 81 AABR07056415.1 ENSRNOG00000057536 ENSRNOT00000085114 3 1 1 80 7 24514480 24528968 GCTGGACATTGATGTACCC 58 24514418 24514438 TGAGTGATTCACAATGGAGGA 59 Novel Rattus norvegicus 81 AABR07068612.2 ENSRNOG00000052177 ENSRNOT00000081086 2 1 1 81 9 112125004 112125022 CATGAGTGGAAGAGTCCCT 58 112121787 112124960 AAACCAGGTGTGATAAGCTC 58 Novel Rattus norvegicus 81 AABR07056425.1 ENSRNOG00000061877 ENSRNOT00000079296 2 1 1 122 7 25004527 25005161 ATCACAGGCCTCAAGACTG 59 25006359 25006378 AATATTTGGCTTGCCTAGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07027022.1 ENSRNOG00000057452 ENSRNOT00000081011 2 1 1 78 17 11214306 11214324 AAGTCACTGACTGCATGTG 58 11213965 11213984 TTAACACAGAAGCTGCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 3 1 1 60 19 5851824 5851843 ATCTCAGGAGGAGTCTCCTG 60 5851866 5852501 TTGTCTGTACCAGGTACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027137.1 ENSRNOG00000058611 ENSRNOT00000078319 3 1 1 81 17 15109075 15111287 GTACTAAATGGGATACGGGAC 58 15111330 15111348 TCAGTATTTCCTGCACAGC 58 Novel Rattus norvegicus 81 AABR07069008.2 ENSRNOG00000060517 ENSRNOT00000088160 2 1 1 81 8 5154331 5154844 GCCTCGAGAAATTTGATCTCAG 60 5154271 5154289 TCAGATGGAAGGCCTTCAC 59 Novel Rattus norvegicus 81 AABR07006889.1 ENSRNOG00000053185 ENSRNOT00000084817 2 1 1 81 1 262929400 262929419 TACTTGTATGCTCCGAAGGA 58 262929462 262931411 TAAGTTGCTCAGCTTCTTCC 58 Novel Rattus norvegicus 81 AABR07069100.1 ENSRNOG00000061498 ENSRNOT00000089784 2 1 1 93 8 8881723 8881742 GAACTGACTGCACTCAACAG 59 8881798 8884424 AAGTGCCAAACCTTGTCTC 58 Novel Rattus norvegicus 81 AABR07069100.1 ENSRNOG00000061498 ENSRNOT00000089784 3 1 1 94 8 8881723 8881742 GAACTGACTGCACTCAACAG 59 8881798 8884425 AAAGTGCCAAACCTTGTCTC 59 Novel Rattus norvegicus 81 AC097778.1 ENSRNOG00000056945 ENSRNOT00000090397 2 1 1 80 8 13398713 13403856 CCAAGAATCCCACCATGGA 59 13403896 13403918 GGTATAACTCGCTTTCCTATTGC 60 Novel Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 3 1 1 86 7 50073545 50073563 ACTTGGAAATGCCAGACTG 58 50072598 50073495 GACAGGGACATTCCCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07073303.1 ENSRNOG00000055879 ENSRNOT00000088546 3 1 1 81 7 54740585 54740604 AACAGAGGACATGGAAGAGG 59 54740645 54741723 CAGATCTTAAGCAGCATCTCTG 59 Novel Rattus norvegicus 81 AABR07043035.1 ENSRNOG00000055856 ENSRNOT00000083730 1 1 1 80 19 18431562 18431662 CATCATCTGCTCACAGAAGG 59 18431705 18431723 CAACACAGTTGACAGGAGG 58 Novel Rattus norvegicus 81 AABR07057176.1 ENSRNOG00000061637 ENSRNOT00000083123 3 1 1 110 7 58882488 58882506 GAGGATTCTGGGACAGGTG 60 58873758 58882414 GGATAATGTCCCTTCGGGT 59 Novel Rattus norvegicus 81 AABR07069528.1 ENSRNOG00000057789 ENSRNOT00000084237 2 1 1 84 8 27376955 27408626 CACGTTCTTTCTTTGCAGTG 58 27376890 27376908 TCTCAAGCACTGACCTCTC 59 Novel Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 1 1 1 60 7 62839118 62839858 TTACTCCAAACAGCCCTCC 59 62839881 62839900 TACGCACTCATAGAGGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069633.1 ENSRNOG00000061559 ENSRNOT00000079468 3 1 1 85 8 35536443 35536461 TAGAAGAATCCTCCCGTGC 59 35514713 35536395 AGTGGGACCAGTTTCTTAGG 59 Novel Rattus norvegicus 81 AABR07043354.1 ENSRNOG00000061623 ENSRNOT00000087479 2 1 1 80 19 27668453 27668472 ACATCATCAAGATGCTGCCT 60 27660629 27668414 GTACTTCTCCAAGTCATTGTCAG 59 Novel Rattus norvegicus 81 AABR07057415.1 ENSRNOG00000051512 ENSRNOT00000077075 3 1 1 114 7 70157365 70167198 GTGGTTGCTTTCTGGTGTG 60 70157269 70157287 TTTAACATGGCACCCACCT 60 Novel Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 2 1 1 60 1 278516798 278516820 AAGAAGAGTGATATCCCAGTCTC 59 278515078 278516778 TCAAGTATCTCCGAATGCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057421.3 ENSRNOG00000059728 ENSRNOT00000079739 1 1 1 80 7 70257723 70264802 CTCGATATCCATGACATATCAAGC 59 70257666 70257685 CTGGCTAACGGTTGATTCTG 59 Novel Rattus norvegicus 81 AABR07057510.1 ENSRNOG00000058442 ENSRNOT00000080586 1 1 1 80 7 75167503 75169722 GCCCATCAGAATGATACAAAGG 60 75167444 75167465 ACATGTCATTTAGGTTTGCCTC 59 Novel Rattus norvegicus 81 AABR07043684.1 ENSRNOG00000054327 ENSRNOT00000079272 1 1 1 69 19 35909902 35909921 AGAAGAATGGATGGACAGGA 58 35904402 35904420 AATCCTTGCCAGTCTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057586.1 ENSRNOG00000057489 ENSRNOT00000091480 3 1 1 83 7 79178451 79179276 AAACGTCCACGAAAGAGAC 58 79179321 79179341 TTTGCTAGTCATGGAATAGCC 58 Novel Rattus norvegicus 81 AABR07057640.1 ENSRNOG00000054328 ENSRNOT00000090645 1 1 1 93 7 82158475 82158493 AGCAATCTTCACTGCTGTG 59 82158550 82160468 TCTCCAGAACAGCTGTGAC 59 Novel Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000090255 3 1 2 80 19 39502569 39536190 TGTACTCGCGAGAATCTGTC 60 39536231 39536251 TTGATGCTGCAGATGTTTCTC 59 Novel Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 2 1 1 67 10 10921317 10943249 AGTTTGCAAAGACTCTGCA 58 10921268 10921286 AACAGTCTCCACAGTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007584.1 ENSRNOG00000051789 ENSRNOT00000085567 3 1 1 82 2 20350022 20350613 TGGCAATGAGAAATGCTCTG 59 20350658 20350676 AGGAAGCCTTGAGTTCGTC 60 Novel Rattus norvegicus 81 AABR07040908.1 ENSRNOG00000052691 ENSRNOT00000080798 1 1 1 60 X 113800142 113800163 GGATACCACATCTGTTTCTCAC 59 113800929 113800949 CATTTGCTGGTCATACTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058011.1 ENSRNOG00000060418 ENSRNOT00000089087 1 1 1 144 7 98125595 98132018 TCTCACCTGCAGGAATCAC 59 98125469 98125487 GAAGAGCAGAGTGGACCTG 60 Novel Rattus norvegicus 81 AABR07058011.1 ENSRNOG00000060418 ENSRNOT00000089087 2 1 1 147 7 98125595 98132018 TCTCACCTGCAGGAATCAC 59 98125466 98125484 TGTGAAGAGCAGAGTGGAC 59 Novel Rattus norvegicus 81 AC119699.3 ENSRNOG00000060453 ENSRNOT00000087147 3 1 1 83 10 16520855 16522736 ACCTGGAAAGGGAGAACTC 59 16522781 16522801 TTGTCTTGTTTACACGACGTC 59 Novel Rattus norvegicus 81 AABR07070161.6 ENSRNOG00000060387 ENSRNOT00000091503 1 1 1 91 8 55537981 55538190 AAACAACAAGAGGCTGCTG 59 55537908 55537926 AGGCTTGCTGCATACTCTC 60 Novel Rattus norvegicus 81 AC115159.2 ENSRNOG00000059416 ENSRNOT00000084731 1 1 1 107 10 35965610 35965631 CATAAGTTGTCTGTTTCCTGCA 59 35962360 35965548 CCCTCAAAGGATCTTTATCTTTCTG 60 Novel Rattus norvegicus 81 AC141334.3 ENSRNOG00000057687 ENSRNOT00000083724 1 1 1 105 10 36612797 36628621 ATCCTCAAGCACTCCAGAG 59 36612710 36612728 TTTCTTCTTGGTGCTGCAG 59 Novel Rattus norvegicus 81 AABR07007802.2 ENSRNOG00000056276 ENSRNOT00000077915 3 1 1 80 2 28877944 28877964 CTGTATGATGAGTGGATTGCT 58 28873336 28877904 TGGATAACATATCCTCTGCAC 57 Novel Rattus norvegicus 81 AABR07042454.2 ENSRNOG00000052233 ENSRNOT00000079720 1 1 1 80 X 157347266 157347284 CAGCTCCTATGGATCCCTG 59 157347328 157353349 CACTGATGAAGGCAAGCTG 59 Novel Rattus norvegicus 81 AABR07007833.2 ENSRNOG00000056895 ENSRNOT00000079662 1 1 1 80 2 29784467 29784485 CTGGAGCCAAGGAAATACC 58 29784529 29786585 TCTGAGATGACCCTTCCAG 58 Novel Rattus norvegicus 81 AABR07042514.3 ENSRNOG00000061056 ENSRNOT00000085679 2 1 1 142 X 158581705 158581723 GATTCCAGTCCAACTCCAG 58 158582064 158582082 TTTGCAAAGGTTTCTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007861.1 ENSRNOG00000057995 ENSRNOT00000090612 3 1 1 93 2 31677263 31679160 GAGTGCAAACCTTGTCCTG 59 31679216 31679235 ATAATGGTTGTCCACGGGAG 60 Novel Rattus norvegicus 81 AABR07058656.1 ENSRNOG00000053803 ENSRNOT00000080276 1 1 1 90 7 129842308 129842326 CTTCTTGTTCTGCAGCTCC 59 129855856 129855874 CACTGATACTAGCCCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044418.1 ENSRNOG00000058447 ENSRNOT00000082193 1 1 1 101 20 5316902 5316920 TTTAGGATACCCAGGCCCT 60 5316082 5316100 TTGAATCCAGGAAAGCCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059002.1 ENSRNOG00000056565 ENSRNOT00000080318 1 1 1 80 4 732949 732967 AAGCTTACGGTTCATGCCT 60 733011 733196 CCTAGAGAAAGGGTCTGGC 59 Novel Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 1 1 1 183 20 6363939 6383413 CAAAGGCCTCTGAGAGGTC 60 6383559 6383578 GAAGAAACCCTGAAGTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059009.1 ENSRNOG00000054713 ENSRNOT00000090542 2 1 1 62 4 1116209 1116233 GAAGTTACCCGTTAGATGAATACTG 60 1084237 1084255 CAAGCATCCAGATGAGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070532.1 ENSRNOG00000054547 ENSRNOT00000089415 3 1 1 81 8 74271549 74271568 CCATTGATCATGTCACAGGA 58 74271609 74272242 GAGAATGTTGTGGTAACTTCCA 59 Novel Rattus norvegicus 81 AABR07028143.1 ENSRNOG00000057590 ENSRNOT00000083646 1 1 1 80 17 57832185 57832205 CTTGGTCTCAAGATGTTGGTC 59 57832246 57837037 ACGAGACGCTTATCTTCAGG 60 Novel Rattus norvegicus 81 AABR07070598.1 ENSRNOG00000055543 ENSRNOT00000090246 3 1 1 80 8 76332853 76333718 CATCAGCTAACTGGTGGCT 60 76332791 76332815 GTTCCTGTATAGCTCTTTAATGGTG 60 Novel Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 3 2 2 80 4 5723936 5723955 TTGAGAGGAGTTGATGACCT 58 5722471 5723893 TATAGGCCACTTGGTAGCG 59 Novel Rattus norvegicus 81 AC097312.1 ENSRNOG00000056114 ENSRNOT00000087367 3 1 1 88 4 7448425 7448444 CAATTCCAGGGTCTACAGCA 60 7448495 7449208 CATGATGCCCTTGTCTTGC 60 Novel Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 3 1 1 62 20 18248203 18258577 AAGGAGATTTCTCAACCGGG 60 18248160 18248181 GCTTCGTTTACGAACTAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 3 1 1 67 8 84681149 84681168 GGGAAAGAAACAAATGCCAG 58 84671566 84681119 TTTGAAGAGGCTCTTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028513.2 ENSRNOG00000054192 ENSRNOT00000082986 1 1 1 80 17 73118410 73122174 GATATGTGGCAGGGATAAGAC 58 73122216 73122234 CAAGACTTCCAGTGTCTCC 58 Novel Rattus norvegicus 81 AABR07044796.1 ENSRNOG00000055711 ENSRNOT00000089837 1 1 1 80 20 20925347 20930984 AATGGAGTTTCCTCAGTTCGT 60 20931021 20931044 GTTCATGATCTACAGAATCCTGTC 59 Novel Rattus norvegicus 81 AABR07059780.1 ENSRNOG00000060558 ENSRNOT00000089406 1 1 1 80 4 35409359 35409378 GAGCAACTGACAAAGGATCC 59 35409418 35427074 CAATTGCCAAGAAATCACTCTG 59 Novel Rattus norvegicus 81 AABR07044836.1 ENSRNOG00000061934 ENSRNOT00000081974 3 1 1 93 20 23027489 23027507 AGAGGGACATGACGATGAG 59 23025316 23027433 CAGAAGAGCTCCTTGTTGAG 58 Novel Rattus norvegicus 81 AABR07044903.1 ENSRNOG00000057647 ENSRNOT00000087727 3 1 1 93 20 25963729 25963749 GCCATCTAAAGAGCTATGGAG 58 25968732 25968751 ACGTGGGATCTATTTCAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008399.1 ENSRNOG00000059278 ENSRNOT00000079629 3 1 1 141 2 56217887 56217905 TGCTTAACCTCATGAGGCT 59 56196463 56196484 CGTGCTTTGTAATTCTTTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 3 2 2 130 20 45683293 45684506 TCCCACGTATCCAGATACG 58 45684600 45684618 CTCCTTACCCAGACACCAG 59 Novel Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650,ENSRNOT00000078712 2 2 2 80 4 68429794 68432750 ATGATTATTACACGGGTGCAG 59 68432788 68432810 GAAGATTAATGTGCTCAAGAGGG 60 Novel Rattus norvegicus 81 AC239813.2 ENSRNOG00000056576 ENSRNOT00000087128 2 1 1 89 Y 182584 182699 TCTGGTTCGGATGCTAGAG 59 182752 182770 AGACCAGTGTAGAGGAGTG 58 Novel Rattus norvegicus 81 AABR07060560.1 ENSRNOG00000052084 ENSRNOT00000087410 3 1 1 83 4 80474889 80474910 TGAGAAAGCAAAGGATATGCAG 59 80474327 80474849 CGATGAGTCCTTTACTCCTAGAG 60 Novel Rattus norvegicus 81 AC111287.1 ENSRNOG00000059841 ENSRNOT00000082305 3 1 1 91 19 43187912 43188067 GATAAAGTACCAGACGGAGGA 59 43188120 43188138 ACTCCAGACTCTCCAACAG 58 Novel Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 3 1 1 60 Y 2027509 2038688 GATGTATCCTGTCCTAGATTGAG 58 2038704 2038726 GTACACAGGAAATCAGATGATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071622.1 ENSRNOG00000059167 ENSRNOT00000080854 3 1 1 82 8 124650275 124658988 GATTACATGGAGAAGCTGTGAC 59 124650214 124650237 CTTCTGGTCTTCCTTACTTATCCT 60 Novel Rattus norvegicus 81 AABR07044009.1 ENSRNOG00000053641 ENSRNOT00000085494 3 1 1 69 19 52840344 52840363 CATCTGCTGAACAATTGGCA 60 52839659 52839677 CATCACTCCGAGACTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044049.1 ENSRNOG00000056656 ENSRNOT00000090624 1 1 1 101 19 53801412 53926642 TAACAAAGGTTACCTCAGCTC 58 53926705 53926723 TGGATAGACTGTCTGTGGG 58 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 2 1 1 61 8 129157630 129157648 CCTCTCCCGAACCTAAGTC 59 129156251 129157607 TATATCTAGTACCAGGCACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008991.1 ENSRNOG00000057131 ENSRNOT00000079647 1 1 1 80 2 82507334 82507354 TGTAGCTGACAATCCTTTCTC 58 82506467 82507295 GAAGCTCTGCAAGAATATTCTG 58 Novel Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000086732,ENSRNOT00000087127 2 2 2 61 7 137518218 137518238 CCAACACTTCTTCTAACAGCA 59 137516098 137516116 CTGTTCAGTGCAAACAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071811.1 ENSRNOG00000055245 ENSRNOT00000087862 1 1 1 105 8 131603556 131603840 CAACAAGCCATAGGAGTGG 58 131603469 131603487 TATCACAGCAGGATCTGCA 59 Novel Rattus norvegicus 81 AABR07071817.1 ENSRNOG00000051893 ENSRNOT00000089025 3 1 1 61 8 132405848 132405866 ATGGATGAAGCCCTGAGTC 59 132402863 132402881 TGCGTTAGTCTAGAATGGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009338.1 ENSRNOG00000055758 ENSRNOT00000091883 3 1 1 83 2 93460431 93488481 GTGAGTGCTTGAATCATTTGC 59 93460368 93460388 AAGCCTCACTTGAACAATGTG 60 Novel Rattus norvegicus 81 AABR07009351.1 ENSRNOG00000058574 ENSRNOT00000079444 1 1 1 93 2 93847274 93847292 TTTGATGTGAAGAACCGGC 59 93845651 93847217 CACAGCTTGCTGAGTTGTG 60 Novel Rattus norvegicus 81 AABR07058955.1 ENSRNOG00000053626 ENSRNOT00000087494 3 1 1 80 7 145370520 145370538 AAAGGAGTCAAGTTCGCCA 60 145370580 145371384 AGACAGGAACTCCTTCAAGTC 60 Novel Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 3 1 1 79 1 281314293 281314681 ATGGAAGTTACCCAGCCAC 60 281314232 281314252 AGTTTCGAGGAAGATTTGTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010144.1 ENSRNOG00000057060 ENSRNOT00000083246 3 1 1 81 2 126270936 126271708 TGTTTCAGATGACTGGACTC 57 126271751 126271770 CTGAAGGATTGGCTCTAGTG 58 Novel Rattus norvegicus 81 AABR07010332.1 ENSRNOG00000058524 ENSRNOT00000090972 1 1 1 80 2 132491798 132492537 AGGAAAGTCCTATAGCAGGA 57 132491737 132491757 ATGACCTTAGAACGTCTTCAG 58 Novel Rattus norvegicus 81 AABR07010468.1 ENSRNOG00000052002 ENSRNOT00000086872 3 1 1 92 2 136983336 136983354 ATTCAGCGAGTCGTAGGTG 60 136982433 136983280 AGAAGGACCTCACCAAGTG 59 Novel Rattus norvegicus 81 AABR07010760.1 ENSRNOG00000061744 ENSRNOT00000088897 3 1 1 60 2 150464495 150464518 CGGAGAATGAAGATACATACACAG 59 150477331 150477352 TTAGAATGCTCTTCAGTCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011908.1 ENSRNOG00000057062 ENSRNOT00000083621 2 1 1 80 2 175661877 175661896 TGTGTCCAGATAGCAGAGTG 59 175661258 175661834 TGAGTTCCAGACTGCTTCC 59 Novel Rattus norvegicus 81 AABR07012081.1 ENSRNOG00000051552 ENSRNOT00000087599 3 1 1 60 2 184915544 184915564 AAGTTCTTGGTGACTTCTCTG 58 184916426 184916444 CCTCAGATTTCTTGCGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012195.1 ENSRNOG00000053596 ENSRNOT00000078105 1 1 1 60 2 190505927 190505947 CTCTTGGAATTGCCTTTATGG 57 190505229 190505248 TCCAGTGAAGCTTCATTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 1 1 1 60 14 3792324 3792942 TAACACTTGAGCAACGGGA 59 3792966 3792984 TCCGCAACATATAAGCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014275.1 ENSRNOG00000060602 ENSRNOT00000082202 2 1 1 80 14 7411957 7411977 ATGTCCATGATGTCATACAGG 58 7410782 7411916 CGTCGTTAACCTTTACAAGC 58 Novel Rattus norvegicus 81 AABR07014298.1 ENSRNOG00000061590 ENSRNOT00000084570 1 1 1 80 14 7973224 7973242 AAGAATCAGAAGCCACTGC 58 7973286 7979720 GTGAGGAAGACTGATCCGA 59 Novel Rattus norvegicus 81 AABR07014328.1 ENSRNOG00000057790 ENSRNOT00000081606 1 1 1 89 14 9785618 9785636 TCCTTGACTCTAGCACGTG 59 9783117 9785565 TTCTCTTCCAGGCTGTCAC 59 Novel Rattus norvegicus 81 AC131411.1 ENSRNOG00000052870 ENSRNOT00000078297 3 1 1 83 14 11297312 11312057 CTAGCACAGCACATGATGG 59 11297247 11297268 TTTGACATCAGACACTTGACTC 59 Novel Rattus norvegicus 81 AABR07072374.1 ENSRNOG00000051972 ENSRNOT00000083647 1 1 1 60 14 11490454 11490474 TTAGAATTAAGCAGTGGGTCC 58 11488306 11490432 TCTGACTCAGCACAACCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07014387.1 ENSRNOG00000055646 ENSRNOT00000084435 3 1 1 70 14 13521371 13521389 TCAGTGTGCAGCTTTACTG 58 13524428 13524446 TCAGGATCAGGAAGGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014512.1 ENSRNOG00000057178 ENSRNOT00000086361 2 1 1 80 14 18845155 18845712 CTATTCTGAGGAATGCTATGATGC 60 18845750 18845769 CTGATTCTGGAGGTTTCTGC 59 Novel Rattus norvegicus 81 AABR07013435.1 ENSRNOG00000059205 ENSRNOT00000084783 3 1 1 84 2 237343406 237343425 TAATGGAAGCATCCAGAGGA 58 237339696 237343362 AGTCAAGATCTGACTCATTTCC 58 Novel Rattus norvegicus 81 AABR07013689.2 ENSRNOG00000059575 ENSRNOT00000092042 1 1 1 80 2 250430278 250431863 TTCCAACTGTTACTCATGTTGC 60 250430219 250430239 CCATCATCTCGAATGATCAGC 59 Novel Rattus norvegicus 81 AABR07013724.1 ENSRNOG00000057103 ENSRNOT00000080920 2 1 1 80 2 253691752 253691771 AGATGATGACTCAGCATGGT 59 253691813 253698806 TAGGTGTCTTGACATGCTGG 60 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 3 1 1 68 2 255464419 255466063 CAGCTCTTGCTTTACAATGTG 58 255464371 255464389 GCCTCTTGAGACTTGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 3 1 1 65 18 45960515 45960535 AACTGGATTTCCATCTCTGTC 58 45960561 45960582 TGCAAATCAGAACTCTTGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767 2 1 2 85 7 115829168 115829948 GAGGACAGTGGTCTGAAGG 59 115829101 115829119 TAGGAGGTCCCTCCTTTCC 60 Novel Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 1 1 1 79 15 43543620 43543638 AATAGGAGATGGAGGCCAG 58 43543682 43543700 TTAGCATGCTAGCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07038464.1 ENSRNOG00000061492 ENSRNOT00000085116 1 1 1 83 X 50184661 50184680 AAAGAGGAGAGGTACTTGGT 58 50184519 50184615 TTGCCTTGTATGTACGTGG 58 Novel Rattus norvegicus 81 SNORD50 ENSRNOG00000056002 ENSRNOT00000086711 3 1 1 66 8 96169259 96169281 ATGATGATCCTATCCCGAATCTG 60 96169215 96169233 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 2 1 1 73 3 76976094 76976113 TGGGACTAACACAGAATCCC 59 76976145 76976168 GACAGTAATGATGTAGGTGATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052112 ENSRNOT00000085973 2 1 1 84 17 37178289 37178307 TACCATGACCACAAAGGTG 57 37178355 37178373 TCGAGTTTCCTGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051714 ENSRNOT00000087464 3 1 1 60 4 165622036 165622055 CTCCTGGGTAGTGTATGCTG 60 165621995 165622015 TGTCTCCTAGGTCCCTTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051692.1 ENSRNOG00000056273 ENSRNOT00000090581 1 1 1 60 3 19441606 19441625 AATTGTGCTCACTCAGTCTC 58 19441648 19441666 GATGGTGACCTTCTCACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061241 ENSRNOT00000083063 2 1 1 60 4 114638413 114638431 CCACAATGTAGGAAGCAGG 58 114638371 114638391 GCCAGCACAAATATAGAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072995.1 ENSRNOG00000056668 ENSRNOT00000086134 2 1 1 60 4 56675684 56675702 TGGCCTTTCTTCCTCTCAC 59 56675642 56675663 CCACAGTAACTACTTTAGGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056355 ENSRNOT00000077921 2 1 1 73 4 70504089 70504108 TTGTTCACTTAACTGGTGGG 58 70504141 70504162 CAATGGTTACATCAAGAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000055091 ENSRNOT00000086834 2 1 1 60 17 14226231 14226252 AGTTACCTCAGTTGATTGTCCA 60 14226192 14226210 GGGAAAGCACAGAGTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094605.2 ENSRNOG00000054953 ENSRNOT00000080650 1 1 1 80 18 30418279 30418298 AGCTACCAGTATGAGGTGTG 59 30418336 30418360 GACACTATTGGGAATGATGTTCAG 60 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000078786 2 1 4 80 19 17410646 17410666 TTGATATCCCAAAGGCAAGAG 58 17410308 17410602 TACTGACTGCTTCTTGTAAACC 58 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887 3 1 5 93 6 114780409 114966731 GAATACTCTAAATACAGTCTCCACG 59 114770908 114780362 GACACATTGAGTTCCTAAAGGTC 60 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 1 2 2 80 9 4093078 4093098 AACTGGAGTCAGATTCAGACC 60 4093138 4093506 CCATGTTGTCCCTGATTTAGG 59 Novel Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 3 1 1 60 8 43835782 43835803 CATTGTCTGGTCTATTCTGAGG 58 43835827 43835845 ACATGTCTGGAAAGCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 3 1 1 139 19 44601340 44601360 CACCAAAGCAAATGCTAATCC 59 44600138 44600159 CTTGTTTACTTGTGTTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 2 2 2 65 X 66516478 66516499 GCCTTGTTCCAAATGTAGTAGG 59 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008443.1 ENSRNOG00000059568 ENSRNOT00000081192 1 1 1 80 2 58679134 58681488 GACAAGAGGTACAAGTCTGC 58 58681531 58681549 CTCAAGTCTCTGGGAAGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054445 ENSRNOT00000082413 2 1 1 60 12 29367143 29367162 ATGGAGCAGAAAGATAGCAC 58 29367102 29367123 GACGAATCCATGAATGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098511.1 ENSRNOG00000054297 ENSRNOT00000089425 2 1 1 80 7 139526457 139526475 TGTGGAATGTTTGCTTGCA 59 139523738 139526414 ATATGGCATGTGTTGCTGTG 59 Novel Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 1 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395934 CCAAACACCATGAAGAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 1 1 1 60 1 37989878 37989898 ATTACAGCAACCTTGTGTTCC 59 37988400 37988419 AGAAACGTCACGAGATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127 2 1 4 81 1 49425805 49425826 CACATCAGTAGCTTTGAACCTG 60 49290238 49425763 GACAGGGTTCCTGACATCC 60 Novel Rattus norvegicus 81 AABR07060593.1 ENSRNOG00000008611 ENSRNOT00000011389 3 1 1 88 4 83096155 83096174 AAGGCGATATTCTTGCTCAC 59 83096225 83096244 ATCTATGAAGCACGGACCT 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058070 ENSRNOT00000077621 2 1 1 60 2 26129599 26129617 TTGATCTGGCAGACAGGTG 60 26129557 26129577 ACAGCATTGAGATGAATGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058301 ENSRNOT00000082519 1 1 1 60 1 246926821 246926842 AAACAAGCTCTCAAGAAAGCTG 60 246926857 246926881 CAAATATGATGATAGGAAGGTGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057902 ENSRNOT00000090295 1 1 1 60 1 194743847 194743867 GGAAGTAGGAGTTGGAATAGG 57 194743807 194743826 TGCAATACTAGGTCGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060127 ENSRNOT00000087258 3 1 1 60 2 228776235 228776255 ATCATGTCTCACGTCTATCAC 57 228776274 228776295 TAGACATAGCCTTTCTCCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058851 ENSRNOT00000077549 3 1 1 65 2 101369821 101369840 GGACTGCTGTGTAACATGTG 59 101369867 101369886 CGCTGAGTATAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124205.2 ENSRNOG00000059975 ENSRNOT00000085007 2 1 1 81 5 140275569 140459760 CTGTGACACAGGATGTGGA 59 140275506 140275526 CTCAACTCAGGATCCTTAGCA 59 Novel Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 3 1 1 60 15 109346163 109346183 GTTTCTTAAGGGATGGTTGGG 59 109346207 109346226 AATTTCTCCACCAAGTAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 3 1 1 60 20 33520834 33520852 CTCAGATCAACCACAAGCT 58 33493056 33493074 GTCTCAGTCAGTTCAGACC 57 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077503 1 1 4 97 9 88309251 88309269 GTGCACAAGGATCAACAGG 59 88308032 88308243 AGGATCTCCCTTCATCCCA 59 Novel Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 2 1 1 96 X 147586616 147586634 CTACAGACCAAACCAGCTG 58 147586536 147586555 ATTCACGAATGTATTCGGGT 57 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000031927 2 1 3 80 X 73502423 73504714 GTTTACAGATCCAGGTGAATTCTC 60 73504749 73504771 CTTTGTCTCTTAGCACTAAGAGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053046 ENSRNOT00000091091 2 1 1 60 19 24884212 24884230 TTATGAGTACTGCGCTCCC 59 24884252 24884272 TTCAGCAAGCTTTCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076871 1 1 2 80 X 74334971 74337605 GGCTGTTTAGAGTACAGGGT 59 74334910 74334929 TCACTCCTCTAAATCCAGGC 59 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 2 3 3 82 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016326 74016344 AGATTCTTTGGCCATGTGG 58 Novel Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 3 2 2 95 8 64825815 64825833 TTCATTCCTGGAGAAGCCC 59 64822300 64825756 CTCTTGGAACACATGCTCC 59 Novel Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 3 1 1 110 6 140642199 140642217 ACATCAGTCTCAGCTTGGT 59 140641993 140642011 GTTTCAGAGACCTTCCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000079157 2 1 2 81 16 33374146 33374165 TCGCCAGAAACTATGAAAGC 59 33374206 33374581 CTCGTTGAGTATCCAATTTGTG 58 Novel Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056 2 1 2 124 10 89173872 89174660 GCACAAGGTCAATGCTGAG 60 89174748 89174988 TAACGTAAAGAAGGGCGGG 60 Novel Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 2 2 2 141 10 89173860 89174649 CATTTCCTAGCAGCACAAGG 59 89174752 89174993 GGCTGTAACGTAAAGAAGGG 59 Novel Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 2 1 1 60 4 84936155 84936175 TGAAGGCATCTTCTCATTCTC 58 84935855 84935874 CTGCTAAGGTCTGGTTTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 1 1 1 82 10 78340590 78340611 GATGAAGATAACCAATAGCCCA 58 78339930 78339948 GAGTAATGCACTGTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 2 2 2 118 10 88568178 88568196 GCAACATCCAGCTGAACTC 59 88567743 88568096 TATGGAATACCCTGGCCCT 60 Novel Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 2 1 1 72 1 21438017 21438035 TCCATACTTCGTTCCTTGC 58 21465637 21465655 AATGCATAGATGAACCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 2 1 1 76 11 7581425 7581445 CTGAAGAGTCTACAAAGGCTG 59 7582452 7582471 CCATGGTTATTTGTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 3 1 1 60 4 182328929 182328948 GGCTTTCTGGGAGAAATTCC 59 182329545 182329563 GTATGCAGTCTTGCTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 1 1 2 60 18 50434458 50434476 TCAGATTGGGAGAGCAAGC 60 50430228 50430249 CCTTTCTCCAGTTCCTAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 2 1 1 74 15 105203079 105203098 ATTCTACCACATGGAGCCAC 60 105205029 105205047 AATCTTCAGCCTTGCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 1 1 1 62 3 17198653 17198674 CAATAGAAATCCTTGCATCCAC 58 17208078 17208098 TTTCTCCTTTCTTCCTACCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 3 1 1 61 6 117418997 117419017 CTTATTGTCTTGTGTAGCCAC 57 117418159 117418177 CCAGTCTTCCCACTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 1 1 1 61 11 37474948 37474969 AATTAGAAGTCAGGATGTCCAC 58 37459816 37459834 CCACACGGACTGTATAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000092040 3 1 2 119 12 22370362 22370380 CCCAGAGATGTACTTGCAC 58 22370463 22371365 ACTGCACAGTGATTTCAGC 59 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 2 1 1 63 12 28150434 28150452 TCTCACAGAGGGATTGCAG 59 28145650 28145668 GTGCCATCTCTGTTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 1 1 1 60 16 58777739 58777758 AGCCAGGATAGAAGAGTCTG 58 58774438 58774456 TCTTGCCATTCCCATTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 1 1 1 69 9 59448122 59448142 CCTTCCTGTTCATAGTCACAG 58 59450900 59450919 TATCTTCCATAGCTTGCCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 2 1 1 60 1 227287283 227287301 CTGGAAGTGACTGGATGAC 58 227288917 227288936 TGGAATCATGATGGCATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 1 1 1 74 9 113800847 113800865 GAGCAAGTGCCTCATTCAG 59 113788479 113788497 ATGCACTCCTTACAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 1 2 2 80 8 4890736 4896592 TAGGTATTTGGCTGGTCTGC 60 4890675 4890693 CTCCATAGGCTAGCAGCTG 60 Novel Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 1 1 1 128 19 8404466 8404486 TTGATAAGAAAGAGCTGAGGG 58 8368527 8368546 TGATTCTTGTGGAGATGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 3 1 1 60 X 129482637 129482655 ATGAACGGAAGTCTGATGG 57 129481105 129481126 TCCATATCACAACAAACAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 1 2 2 80 4 5722468 5723891 CTACCAAGTGGCCTATACGA 59 5722407 5722427 ACTTAAAGACCACCTGTTCCA 59 Novel Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 1 2 2 80 20 45683292 45684506 CTCCCACGTATCCAGATACG 60 45684548 45684567 TGGCGATTTCAGAAAGATGC 59 Novel Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 1 1 1 60 19 48572976 48572994 GTTTCTGCTTCCTGCAGAG 59 48569118 48569138 TTGACTGAGGAAGTCATCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 2 1 1 60 19 61789227 61789246 CTGGCTCCAGTAAACAAGAG 58 61784877 61784898 CCTTTCTTGGCTACATTTCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 2 1 1 60 7 140008677 140008695 GTCTCCAGTGTTTCTTCCA 57 140010230 140010248 TGAGAAAGTCTTCTGCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 Mt-co2 ENSRNOG00000030371 ENSRNOT00000043693 2 1 1 60 MT 7413 7434 AGAAGTTGATAATCGGGTAGTC 58 7450 7473 GGATGAGATTAGTATACGGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552128 ENSRNOG00000050724 ENSRNOT00000056486 3 1 1 171 2 193007795 193007813 TGTGTCTTCCTGCTGTAGC 60 193007642 193007660 ACTGCTACAGCATCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0211.1 ENSRNOG00000050700 ENSRNOT00000074085 1 1 1 60 X 21032875 21032893 ACAGACTACGAAGGAGCAG 59 21032914 21032935 ATTCCTCTTTCACCAATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rxfp3 ENSRNOG00000023126 ENSRNOT00000031693 3 1 1 60 2 61007415 61007434 CTGATGAAGAGCAAACAGGG 59 61007374 61007393 CCAGGTTAGTGACAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actrt1 ENSRNOG00000003456 ENSRNOT00000004591 1 1 1 60 X 133228006 133228027 GCATGTATGACGGTTTATACCT 58 133228047 133228066 TCCCATCTAGTTACCAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 2 2 2 108 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757594 33757612 ACTGTCTGCTTCTAGCAGG 59 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210,ENSRNOT00000080331,ENSRNOT00000079802 3 4 5 80 X 22280578 22281784 TCATTGAAGCTTTCAGCCAG 59 22281825 22281845 TGAAGATAGTGTCTGGGTTCC 59 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 2 2 2 80 15 34358553 34358917 CATCATTTCAGACGGAGGC 59 34359681 34359699 CCCAGCATCACAAAGTCAG 59 NA Rattus norvegicus 81 Olr1126 ENSRNOG00000030845 ENSRNOT00000044295 1 1 1 60 8 18910505 18910526 CATGCTATTCGTTAGTCTGGAG 59 18910466 18910485 CACATAGCGATCATATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txlng ENSRNOG00000004971 ENSRNOT00000006843 1 1 1 80 X 33599810 33618591 CCGGAGAAGTTTGAAATTGGT 59 33618630 33618651 AGACTTACATACCATGTCTGCT 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943,ENSRNOT00000064712 3 2 2 81 5 138361051 138361071 GTTCTGCACTGGAGAATTCAG 59 138359703 138360752 GAAATCCTTTATGACCCTGTGG 59 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 1 2 2 97 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549981 34549999 AATCGGAAGCTGTAGACCC 59 NA Rattus norvegicus 81 Mir582 ENSRNOG00000040434 ENSRNOT00000062187 1 1 1 61 2 40863756 40863775 TGGATACAGTTGTTCAACCA 57 40863798 40863817 GGTTCAGTTGTTCAACAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7c-1 ENSRNOG00000035500 ENSRNOT00000053623 3 1 1 60 11 16052887 16052908 TTGAGGTAGTAGGTTGTATGGT 58 16052924 16052947 TAGAAGGTTGTACAGTTAACTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbxip1 ENSRNOG00000020673 ENSRNOT00000028057 3 1 1 82 2 188775096 188775115 ACGATGATGAAGTGGATGAC 58 188775158 188775583 CTTCTTTGACCTCCTCTTCAG 58 NA Rattus norvegicus 81 LOC100365336 ENSRNOG00000003783 ENSRNOT00000005021 2 1 1 60 X 53629632 53629651 CCTCTACCTCTGCAACTTCC 60 53629672 53629692 CTTGAGGATTTCTACCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074,ENSRNOT00000090588 2 2 2 80 8 62939357 62939375 TCTCAGCTCTGGTCTTGTC 59 62939417 62940283 CTTTAAGATTGGCCCTGTGAG 59 NA Rattus norvegicus 81 Zdhhc24 ENSRNOG00000019825 ENSRNOT00000026832 1 1 1 114 1 220137478 220137496 ATCAGCTGCTCAATCTGCT 60 220137574 220138696 TGGTAACAGTAAGCCCAGC 60 NA Rattus norvegicus 81 Chaf1b ENSRNOG00000001692 ENSRNOT00000002299 2 1 1 80 11 34115947 34117505 GAGTGACATTTCCTGGTCC 58 34117549 34117567 TCAAAGGTCACGAATGAGC 58 NA Rattus norvegicus 81 RGD1563302 ENSRNOG00000038917 ENSRNOT00000059490 1 1 1 80 15 39598469 39598488 CCAGAAACAAAGACTGGGAG 59 39597276 39598428 TCAGGTTCCTTGAATAAAGGC 58 NA Rattus norvegicus 81 Mageh1 ENSRNOG00000003178 ENSRNOT00000004238 1 1 1 60 X 19243922 19243941 CTCAGAGGCTTCTAAGACCC 59 19243964 19243982 GTATTCTTCGGGTGTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mageh1 ENSRNOG00000003178 ENSRNOT00000004238 2 1 1 60 X 19243923 19243941 TCAGAGGCTTCTAAGACCC 58 19243965 19243983 GGTATTCTTCGGGTGTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 2 2 2 80 2 123814236 123820246 GGGAAGATCACTGAAAGTTCTC 59 123820287 123820305 TCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 Irs2 ENSRNOG00000023509 ENSRNOT00000032918 2 1 1 187 16 83828315 83828333 AGGAGACAAGAACTCCTGG 58 83828482 83846256 CACTTTACTCTTTCACCACGG 59 NA InUTR Rattus norvegicus 81 Abca4 ENSRNOG00000012892 ENSRNOT00000017878 2 1 1 80 2 225776687 225779399 AAGTACAAGTTTGGAGACGG 58 225779441 225779460 AGGATTCAAATCAGGAAGCA 57 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 2 3 3 147 1 170471305 170471466 AACTGAGAAACTTGCGAGAC 59 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065,ENSRNOT00000035125 1 2 2 81 1 56163385 56163403 ATAAGTGAACTGCAGCTGG 58 56162283 56163340 CATAGAAACCTGAGCTGGG 58 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 1 2 2 80 20 5533009 5533027 CCAGGATCAGTCTCTGCAG 60 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 3 2 2 85 20 5533014 5533032 ACGTTCCAGGATCAGTCTC 59 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 AABR07037395.2 ENSRNOG00000052559 ENSRNOT00000075010 2 1 1 60 X 19855495 19855513 AGAAGCCTACAGAACTCCA 58 19855537 19855555 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt44 ENSRNOG00000008898 ENSRNOT00000011824 1 1 1 80 14 80365539 80365557 TTTGGCCTGAAGTAACCGA 59 80365599 80366508 CTTCCCATAGGATCAACAGGT 59 NA Rattus norvegicus 81 Vstm2b ENSRNOG00000017456 ENSRNOT00000023671 1 1 1 86 1 97634219 97634237 GTGGTGGTACCTCAAGGAG 59 97634285 97635342 TTATTTGTTACCTTGCTCCGG 59 NA Rattus norvegicus 81 Mapk1ip1 ENSRNOG00000016935 ENSRNOT00000022714 1 1 1 60 1 211195710 211195728 AGAGCACCTTGATGACCAC 60 211195668 211195687 TTGATGGCTTTGTTGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3a1 ENSRNOG00000005218 ENSRNOT00000008355 1 1 1 80 14 84404929 84405637 ATGAGCAAGGGAACTTTCCA 60 84405680 84405698 ACTTCTCGTAGCGTTCCTG 60 NA Rattus norvegicus 81 Cpox ENSRNOG00000001654 ENSRNOT00000002257 2 1 1 80 11 44044409 44044427 AAGCACTGTGATGACTCCT 59 44041799 44044369 CAGATTAAACTCTACATACCGCC 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007,ENSRNOT00000059868 1 2 2 80 8 47276843 47276862 CCAGTCACAATCTCAGATCC 58 47274917 47276802 CAACAAGCCCAAATTTCTCAG 58 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 2 1 1 64 2 193429252 193429270 AAGTACTCACGAAGCAGGA 58 193429298 193430050 CTTCACTATGACGTCGGCA 60 NA DesignNoJunction Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 2 1 1 64 2 39316726 39317552 GATCACTACTCTAACATAAGCCC 58 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000052129,ENSRNOT00000089371 2 3 6 80 1 76612919 76612937 GGACCACGACTCATAACCT 59 76604210 76612876 ATAGATCACCTTGGCCTTGG 60 NA Rattus norvegicus 81 Dpf1 ENSRNOG00000020687 ENSRNOT00000028091 1 1 1 80 1 87250202 87250220 GCTGTTGGAGGAAGAAACG 59 87250261 87251787 CCTCACAATCGATCTTGTACTC 59 NA Rattus norvegicus 81 Islr ENSRNOG00000048924 ENSRNOT00000075476 1 1 1 60 8 62947866 62947884 TTCACTGGCACATTCACAC 59 62947824 62947842 GTGCCTACATTAGGACTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr486 ENSRNOG00000029884 ENSRNOT00000052306 1 1 1 60 3 73561098 73561118 GTGGCTACAATGTCATCAGTC 59 73561058 73561077 CACAACAGAGGTAACAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a6 ENSRNOG00000005900 ENSRNOT00000008034 2 1 1 86 3 5571772 5572425 CTTGGCAAGTCTTCTGCTG 59 5571704 5571722 ATGAAGCTAAGCAGCAGGA 59 NA Rattus norvegicus 81 AABR07013776.1 ENSRNOG00000048082 ENSRNOT00000072487 1 1 1 60 2 256154203 256154224 GATGGAATGATCAGAGAAGCAG 59 256154164 256154188 CAAACTCTTCATAGATTACCTGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627,ENSRNOT00000005061 1 2 2 80 X 35693559 35699105 CACTGTCTAATAGAAGCCAATCC 59 35699144 35699163 AGTTCTGAATGTCCTTGCTG 58 NA Rattus norvegicus 81 Irx2 ENSRNOG00000012742 ENSRNOT00000017019 3 1 1 80 1 33273688 33273706 ATGCTTCCAGAAGCAAGGA 59 33273344 33273644 GACTGATCCCTTCGTCCTC 59 NA Rattus norvegicus 81 Rn60_X_0594.6 ENSRNOG00000051313 ENSRNOT00000076102 3 1 1 82 X 58583431 58583452 AACATGGCATTATAGCCAAGTG 60 58583228 58583390 GGCTCAAGTGCTGAATATCTC 59 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 3 2 2 91 17 9551160 9551178 GTACCAGACATTTCGCCAC 59 9550697 9551105 CCACCTTGAACTGTTCCTG 58 NA Rattus norvegicus 81 Olr1137 ENSRNOG00000047576 ENSRNOT00000072311 3 1 1 60 8 19154427 19154447 CCCTGAGGTATACAATCACCA 59 19154387 19154406 AGACAGAGCAGAACAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Selenbp1 ENSRNOG00000047158 ENSRNOT00000071603 3 1 1 80 2 195417396 195418146 CTCACTGGGCAGATCTTCC 60 195417334 195417352 ACACGTTAGCTCTTGGTCC 60 NA Rattus norvegicus 81 Ppef1 ENSRNOG00000027331 ENSRNOT00000058947 3 1 1 80 X 35945826 35945849 ACTATGTACAGATACCGATCTGAC 60 35945887 35947096 ATCCATGGAGATCAGACCTG 59 NA Rattus norvegicus 81 Ttc24 ENSRNOG00000028765 ENSRNOT00000050476 3 1 1 81 2 187431165 187431185 CAGAACATCTTCCATCTGGAG 58 187430849 187431123 AACAAGGCACTATTGTTGGG 59 NA Rattus norvegicus 81 Fgd2 ENSRNOG00000000528 ENSRNOT00000041665 3 1 1 82 20 6976566 6976587 TCAAGAATAAGCTATCGAGTGG 58 6976630 6977340 CTCAGGTTCCTGAGTCTCC 59 NA Rattus norvegicus 81 Ctsk ENSRNOG00000021155 ENSRNOT00000028730 1 1 1 80 2 196660056 196660075 CCTTCCAATATGTGCAGCAG 59 196660116 196664029 ACATACAACTTTCATCCTGCC 59 NA Rattus norvegicus 81 Slamf9 ENSRNOG00000008045 ENSRNOT00000010594 3 1 1 80 13 90836761 90837179 TCCTTCTGTGCAGATCCTG 59 90836699 90836719 GAGTAAGAGAAGGACCAAGCT 59 NA Rattus norvegicus 81 Cdc23 ENSRNOG00000024241 ENSRNOT00000037888 2 1 1 80 18 27441155 27445394 ACAAAGAGATGCTGAAGTTCC 59 27441095 27441116 GCAATTCTGTGTATATGTGAGC 58 NA Rattus norvegicus 81 Insig1 ENSRNOG00000006859 ENSRNOT00000009233 1 1 1 80 4 345589 346035 GTCTACCAGTACACGTCCC 59 346079 346097 CACTGTGACACCTCCTGAG 60 NA Rattus norvegicus 81 LOC688924 ENSRNOG00000037485 ENSRNOT00000056742 1 1 1 101 1 89150254 89150573 CTGTTCTCCCTGAAGACCC 59 89150638 89150656 GATGATGCTGGAGATGCTG 59 NA Rattus norvegicus 81 Sec14l2 ENSRNOG00000004672 ENSRNOT00000006542 2 1 1 80 14 84353464 84353482 ACTTTCTCCTTCGATGGCT 59 84348657 84349076 GGAATTCCACATGCTTCCG 59 NA Rattus norvegicus 81 Abhd17b ENSRNOG00000012514 ENSRNOT00000044486 3 1 1 81 1 239293565 239293583 TTCTGGAAAGCCAACAGAG 58 239293628 239297834 ACGAATGCCGTATCTTGTC 58 NA Rattus norvegicus 81 Olr106 ENSRNOG00000015893 ENSRNOT00000021273 1 1 1 60 1 168611635 168611654 TCACCAACTCCATCTTCTCC 59 168611594 168611612 TACACTGTCTCCAACCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Them4 ENSRNOG00000020829 ENSRNOT00000028260 2 1 1 82 2 195565091 195569137 CAAACCCACTTTGTTGACTC 58 195569180 195569200 CCTTCTTCTAAGCTTCTGGTG 59 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375,ENSRNOT00000079137 2 2 2 80 6 22242121 22242141 AATGACTGATGGATACTCTGG 57 22235062 22242080 GGTTTCAGTTCTCGGATAGG 58 NA Rattus norvegicus 81 Tdg ENSRNOG00000027124 ENSRNOT00000034213 2 1 1 80 7 27199491 27201491 GGAAATCACTTCTGGAAGTGTC 59 27199432 27199450 AGGTAAGGTGTGGTCATCC 59 NA Rattus norvegicus 81 Oosp2 ENSRNOG00000036624 ENSRNOT00000042091 2 1 1 80 1 227998713 228010779 TTGTTCATCTCGGAAGTCAG 58 227998652 227998671 GTCATAAAGTGACTCTCGGG 58 NA Rattus norvegicus 81 Ccdc157 ENSRNOG00000005147 ENSRNOT00000006911 3 1 1 81 14 84377737 84379459 CCAGATCCAAAGCTCTAGCA 60 84377675 84377693 CTGTAGGACCTGGATTCGG 59 NA Rattus norvegicus 81 Pim1 ENSRNOG00000000529 ENSRNOT00000000637 2 1 1 80 20 8168179 8168200 AGATATTCCATTTGAGCACGAC 59 8168239 8169169 TGTTGACATTCTGAAGAGACC 58 NA Rattus norvegicus 81 Mei4 ENSRNOG00000023794 ENSRNOT00000037530 3 1 1 80 8 89434326 89487281 ATAAACAGGTTCCAGGTGC 58 89487322 89487343 AATAGACTTCCTCAACAAGCTG 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000080931,ENSRNOT00000008936 3 2 2 80 4 17354381 17354400 TCACTGAGAAGGCATTGGAG 60 17352831 17354338 CCATGTCATTCACGCACAG 60 NA Rattus norvegicus 81 Mzb1 ENSRNOG00000022009 ENSRNOT00000036301 1 1 1 80 18 28437584 28437602 CAGGAGCTGAGTGAATCCA 59 28437204 28437542 TTCTTGGACTCCATAGGACTG 59 NA Rattus norvegicus 81 Hus1b ENSRNOG00000055922 ENSRNOT00000086985 1 1 1 60 17 35424473 35424491 CGTGAGTGTTTATCTGCCT 58 35424515 35424533 ATTTGCCATCCTTTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgprb13 ENSRNOG00000049416 ENSRNOT00000072393 2 1 1 60 1 103630299 103630318 TATCCCTGAGGAAGAAGGTG 58 103630258 103630277 ACTGCTCTGTACTCGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 1 2 2 80 13 94041679 94050339 GCCTTTGTGTCGAACTCTC 59 94041617 94041636 ATCAATCACGCTGTAGATGG 58 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000083779 2 2 3 88 5 22764941 22769803 AGATAAAGAGGCAAAGCACG 59 22764872 22764890 CAATGACCATGAACCACGT 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 3 2 3 80 5 22747114 22749239 AGGCTAAAGTTAAAGAACCCAC 59 22747055 22747073 TTCCCTCTTCAGTCTTGCT 58 NA Rattus norvegicus 81 Senp7 ENSRNOG00000001616 ENSRNOT00000044177 1 1 1 80 11 46885772 46885795 GCCATGTATTCTCATACTAGACTC 59 46884840 46885733 ACCTCCAAATACTCTCGCA 58 NA Rattus norvegicus 81 Rn60_7_0716.1 ENSRNOG00000033952 ENSRNOT00000041958 3 1 1 60 7 71399339 71399358 ATCCTCCAAATTCTCCTCCT 58 71399298 71399316 TGGAGTGTAACTTGTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St14 ENSRNOG00000005903 ENSRNOT00000009139 2 1 1 80 8 32244223 32244486 TCATGTGACAATGTGAATGCC 60 32244163 32244181 GTTGCCCTTGTTCAGACAG 59 NA Rattus norvegicus 81 Mir30a ENSRNOG00000035646 ENSRNOT00000053769 2 1 1 60 9 29542638 29542657 ACTGTAAACATCCTCGACTG 57 29542680 29542698 CAAACATCCGACTGAAAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl7a4 ENSRNOG00000029126 ENSRNOT00000040600 1 1 1 80 17 39096773 39097543 TGCGCAGGAAATATACAGTC 58 39100630 39100651 ACTCCATATGCTCATGAAAGTC 58 NA Rattus norvegicus 81 Zfyve19 ENSRNOG00000012528 ENSRNOT00000016854 2 1 1 81 3 111021074 111021093 AAGTGGCTTTAACATCCCTG 58 111021137 111021279 TTCTTCCTCAGCCTCAGTC 59 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 1 2 2 80 X 22410984 22411004 CAGTACGCTACTACATGAGAG 58 22410685 22410944 GATTCTTGGCTCTACTTTCCT 58 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 2 2 2 80 X 22410983 22411003 AGTACGCTACTACATGAGAGG 59 22410684 22410943 TGATTCTTGGCTCTACTTTCC 58 NA Rattus norvegicus 81 Ccdc147 ENSRNOG00000053565 ENSRNOT00000077738 1 1 1 80 1 267695914 267695933 GGAAATAGTGAACCTGACCA 57 267695975 267699595 AGTAAATCTCGGATGTTGCT 57 NA Rattus norvegicus 81 Sfi1 ENSRNOG00000018412 ENSRNOT00000036848 3 1 1 80 14 83365527 83365545 TCTCGAGTTGAACAGAGGG 59 83363869 83365485 TAGGACTGTCATCCTGTAGTG 58 NA Rattus norvegicus 81 Rn60_17_0530.1 ENSRNOG00000059319 ENSRNOT00000087008 3 1 1 60 17 52954208 52954227 GAAGAGGAGGAAGACAGAGG 59 52954250 52954268 GCTGAGAACCATCAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl11 ENSRNOG00000032642 ENSRNOT00000047309 1 1 1 60 8 116709865 116709884 TGATACCCAGATAGTGTCCA 57 116709907 116709925 TTGCTGGTTATTGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 1 1 1 83 4 145121580 145121598 CTCATCCTGTCCTTCCTCG 59 145117684 145121536 ATCTTTGTTCTCCTGTTTGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Uqcc3 ENSRNOG00000045561 ENSRNOT00000074747 3 1 1 88 1 225076802 225076910 GTTAATGCTGCAGGAGATGC 60 225076733 225076751 CCTTCAGGGTAGCCATCAC 60 NA Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000036549 2 1 2 105 7 115978561 115981668 GGAGCTAGCTGTAACACAG 58 115978474 115978492 AATGATGACACAGTGGGTG 58 NA Rattus norvegicus 81 Cdc20 ENSRNOG00000028415 ENSRNOT00000036151 1 1 1 80 5 137263956 137263976 GAAGGCTTGCAGATACATTCC 60 137263801 137263918 AGATTCAGGTAGTAGTCATTCCG 60 NA Rattus norvegicus 81 Olr371 ENSRNOG00000030471 ENSRNOT00000045383 1 1 1 60 1 230451329 230451348 CACTGACAAGGTAGCATCTG 58 230451369 230451389 GACTATAGGGTTCAACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nanos3 ENSRNOG00000031593 ENSRNOT00000050214 3 1 1 207 19 25287883 25287901 AAAGACACAGAATGCTGGC 59 25285005 25285024 CTAAGCAAGGTCCAGTCTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bivm ENSRNOG00000022894 ENSRNOT00000033133 2 1 1 80 9 50899576 50899595 ACTTCGTGTGGTATCTCCTC 59 50899637 50900144 AATAGGTGGGAGATTCCCAG 59 NA Rattus norvegicus 81 Cldnd1 ENSRNOG00000001657 ENSRNOT00000002260 3 1 1 81 11 43987739 43987868 ATCTCCTTGCAGGTCTGTG 59 43987676 43987695 AGCCCTAGTTTCTGATGGAG 59 NA Rattus norvegicus 81 Rn60_X_0627.1 ENSRNOG00000051124 ENSRNOT00000076365 2 1 1 60 X 62035534 62035554 GAGATTGTCACTGTACCAGAG 58 62035494 62035514 TGTAGAGCATAGGAGGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfdn1 ENSRNOG00000018653 ENSRNOT00000025353 1 1 1 80 18 29286884 29290398 AGTTGAAGAAGGCCTTCAC 58 29286822 29286841 CAATCTGTATGTCTGCAAGC 57 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 3 2 2 107 1 243518368 243542072 AGTGGCAGATGAAGACCTC 59 243542143 243542161 AGATCTGGGACATGCTCTG 59 NA Rattus norvegicus 81 Nat8l ENSRNOG00000049351 ENSRNOT00000074734 3 1 1 87 14 82046614 82046632 GATTCTGGCCTACCTGGAG 59 82044349 82046563 CCAGAAACAGGAACCAGGT 60 NA Rattus norvegicus 81 LOC691195 ENSRNOG00000049848 ENSRNOT00000040249 2 1 1 60 3 91870622 91870641 CACTTTGTGAGGACTAACGG 59 91870661 91870682 TGAATTCATATGGAATGGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rergl ENSRNOG00000008130 ENSRNOT00000010728 1 1 1 80 4 173633363 173634840 TATGACCCATGTTCTCAATCAC 58 173633304 173633323 CACAATCACAAACCCATCTG 57 NA Rattus norvegicus 81 Mir3580 ENSRNOG00000048556 ENSRNOT00000070841 1 1 1 60 X 151295666 151295686 GCCCTGCTTGTACTTATTCTG 59 151295626 151295649 CTCTACTCATACTACCCTAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sncb ENSRNOG00000018039 ENSRNOT00000024357 2 1 1 92 17 10385492 10388433 TCTACGTCGGAAGCAAGAC 60 10388645 10388663 CTCCTCCCAGATGAGATGC 59 NA Rattus norvegicus 81 Hey2 ENSRNOG00000013364 ENSRNOT00000018718 1 1 1 80 1 29191303 29193221 GAACAATTACTCCGGGCAC 59 29193262 29193283 TTTCTTGCCATAATCTGAGAGG 58 NA Rattus norvegicus 81 Fpr2 ENSRNOG00000031331 ENSRNOT00000041605 1 1 1 60 1 116153009 116153028 CCCTTGTTAATTCTAGCCGT 58 116152968 116152989 ATAAAGAAGGAAGCCACAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calr ENSRNOG00000003029 ENSRNOT00000004091 1 1 1 80 19 25958998 25959185 AAATCCTGAATACAAGGGCGA 60 25958938 25958957 ATCTCTGGGTGTATCCAGGT 60 NA Rattus norvegicus 81 Sik1 ENSRNOG00000001189 ENSRNOT00000001579 1 1 1 80 20 10678697 10678715 TGGAGAAGATCTACCGGGA 59 10676170 10678655 TCTCCATAACCTGGTAAAGCT 59 NA Rattus norvegicus 81 Ppp1r17 ENSRNOG00000012235 ENSRNOT00000016414 3 1 1 83 4 86281257 86284793 CCACTCAGATGACCTTTCAG 58 86284839 86284857 GTGGCCTGTACATTCTTCC 58 NA Rattus norvegicus 81 Mir3576 ENSRNOG00000036488 ENSRNOT00000054596 1 1 1 80 6 133877900 133877919 GGGCAGTATTTGATACTCGA 57 133877839 133877860 AGGAGAAATTATCCTTGGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx18 ENSRNOG00000025430 ENSRNOT00000037203 2 1 1 80 13 37529941 37530047 CAGGAATGGAACAGGAGTC 58 37529879 37529898 ATCAGTTCCTTAAGCACACC 58 NA Rattus norvegicus 81 Eif3c ENSRNOG00000018761 ENSRNOT00000025782 1 1 1 80 1 197965137 197965155 CCAGGAAGAGTCTCTGAGG 59 197964992 197965098 ATATCTGAGAGTGTCTCCATACTG 59 NA Rattus norvegicus 81 Eif3c ENSRNOG00000018761 ENSRNOT00000025782 2 1 1 80 1 197965004 197965110 CTATGACTCAATCAGTATGGAGAC 58 197964947 197964966 ATCTTGCTGATGATGGAGTG 58 NA Rattus norvegicus 81 Col8a1 ENSRNOG00000039668 ENSRNOT00000060838 1 1 1 83 11 45000778 45000799 CCCAGTATATGAAGGAAATCCA 58 45000840 45004160 CTAATGGTATTTCTCCTTTGCC 57 NA Rattus norvegicus 81 Col8a1 ENSRNOG00000039668 ENSRNOT00000060838 3 1 1 101 11 45000760 45000778 AAGAGTACCCACACCTACC 58 45000840 45004160 CTAATGGTATTTCTCCTTTGCC 57 NA Rattus norvegicus 81 Anp32a ENSRNOG00000014846 ENSRNOT00000020443 1 1 1 80 8 67327094 67328983 AGCCGCTGAAGAAGTTAGAG 60 67329025 67329044 TTTCTCGGTAGGCATTCAGG 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 1 3 3 80 8 109511341 109511360 GGGAAGAATGAGCTATGCAG 59 109502103 109511300 CAATACTCAATGCTGGTAGGG 59 NA Rattus norvegicus 81 Xdh ENSRNOG00000007081 ENSRNOT00000009634 1 1 1 80 6 25182785 25182803 CCCATCTCTGACCTCAACC 60 25181339 25182742 AACAGTTCTCCTGGTACCTC 59 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 80 20 9835698 9835718 ACCTGAACTACTGGTACAGTC 59 9835758 9835976 CGGGAAACATGATCTGAAAGG 59 NA Rattus norvegicus 81 Serpinb2 ENSRNOG00000002460 ENSRNOT00000003409 1 1 1 80 13 27459155 27459595 AAACCAAAGGTGAAATCCCA 58 27459636 27459656 AGATAGTATTCACCAGGACCA 58 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 2 2 2 80 12 2095647 2095665 ATTGCGAGTACCTTCGTCC 60 2095706 2096450 AACCCACATCATAGATCTGGTC 60 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882,ENSRNOT00000018843 2 2 2 80 18 31952228 31952248 GACAGAAACTGACATCTGTGC 60 31950259 31952186 CCTGGAAGCATTCTCAGGT 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882,ENSRNOT00000018843 3 2 2 80 18 31948681 31948699 TAGCCTTGTTCATCGGCTC 60 31908019 31948637 TTGTTAGCAACGTTTGCCA 59 NA Rattus norvegicus 81 LOC100911295 ENSRNOG00000050978 ENSRNOT00000075762 1 1 1 95 11 36477178 36479426 CGGGAAAGGATAAAGCATCAG 59 36477103 36477121 CTGTAGTTTGCTGGTCAGC 59 NA Rattus norvegicus 81 Hexim1 ENSRNOG00000003203 ENSRNOT00000004272 1 1 1 60 10 91201771 91201789 CAGAATTGAGCTGCTTGGA 58 91201813 91201831 CCAGTGGATAAGTCCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltbp1 ENSRNOG00000033090 ENSRNOT00000047674 1 1 1 80 6 21448214 21539877 CAGCAGATACATTCTCAAGTGG 59 21448155 21448173 GAGCACATACTCCTGGGTC 60 NA Rattus norvegicus 81 Tff2 ENSRNOG00000001162 ENSRNOT00000001537 1 1 1 89 20 9875296 9875909 AGAAACCTTCTCCCTGTCG 59 9875225 9875243 TAAAGCACTGGTCACTGGT 59 NA Rattus norvegicus 81 LOC100911478 ENSRNOG00000019043 ENSRNOT00000025743 1 1 1 80 9 101028461 101038496 GTGGCTTCTAGAGGTCCTC 59 101028399 101028417 TTTGCTCCCTCTGACACTG 60 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 2 2 2 80 9 47166984 47167005 AGATCGTCTGAAGTTTCTACCA 59 47167044 47168031 TTAATCGATTCAGGGCTTCTG 58 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 3 2 2 80 9 47166985 47167006 GATCGTCTGAAGTTTCTACCAG 59 47167044 47168032 CTTAATCGATTCAGGGCTTCTG 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214,ENSRNOT00000088676 2 2 2 81 1 80178584 80178602 TCCAGATCTACCACAACCC 58 80178446 80178539 TTGATAACCACCTGCTGGT 59 NA Rattus norvegicus 81 Ttc39d ENSRNOG00000027343 ENSRNOT00000023114 2 1 1 142 6 2886932 2892998 CAACAGAGCAACACTTCAGAG 60 2893101 2893120 CATGTCTTTGGTACCGTGAC 59 NA InUTR Rattus norvegicus 81 Rad51 ENSRNOG00000037302 ENSRNOT00000056432 3 1 1 80 3 110929164 110931856 CTACTTCAAGGTGGAATTGAGAC 59 110931894 110931914 ATGACAGATCTGTGTCTTCCC 60 NA Rattus norvegicus 81 Rerg ENSRNOG00000027592 ENSRNOT00000030850 2 1 1 88 4 171072453 171072471 ATCAACCTACCGACACCAG 59 171070867 171072401 TCTGGATGGTGTCTTCCTG 59 NA Rattus norvegicus 81 Ilk ENSRNOG00000018993 ENSRNOT00000025906 3 1 1 80 1 170582819 170582838 GAATGAACATGGGAATGTGC 58 170582880 170583057 CCGTTAGCTACTAGGTCCTC 59 NA Rattus norvegicus 81 Tdp2 ENSRNOG00000018246 ENSRNOT00000059570 2 1 1 80 17 42236219 42240614 CGAGGACTATGTTGATCTAACCA 60 42236161 42236181 TCTAGAGGAGTTCCAGATGGA 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 3 2 2 80 2 188016258 188016278 GTAGAGCAGACTCAGATTCCA 59 188016451 188016662 ATGGTTGTAACGCCTCCTC 60 NA Rattus norvegicus 81 Rhoq ENSRNOG00000015415 ENSRNOT00000020822 2 1 1 80 6 10563159 10563180 GAATGGGTACCAGAACTAAAGG 59 10563219 10563515 GTCATCTCGGAGATCAATCTG 58 NA Rattus norvegicus 81 Mir3068 ENSRNOG00000035409 ENSRNOT00000053532 2 1 1 60 6 111468775 111468796 GAGTTCATGCAAGTTCTAACCA 59 111468736 111468757 ATGTTGGAGTACTGCAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab2a ENSRNOG00000005963 ENSRNOT00000008522 1 1 1 80 5 21653278 21653299 GTTGGTAAATCGTGCTTATTGC 59 21653337 21663955 AAACTCTACACCAATTGTGAGG 59 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 2 2 2 88 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472115 100472134 ATGACGGAGGATTTGTACCC 60 NA Rattus norvegicus 81 Prdm13 ENSRNOG00000007683 ENSRNOT00000010126 1 1 1 80 5 35829451 35829764 GGAGGACAGATCTTCTATCGG 59 35829391 35829411 AGCCAAGGAGTTAGAATACCA 59 NA Rattus norvegicus 81 Olr340 ENSRNOG00000031648 ENSRNOT00000046384 1 1 1 60 1 229755729 229755752 TGTCTTCCTTCTCATCTATCTCAG 59 229755770 229755789 AATCAACCCTACCATTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr340 ENSRNOG00000031648 ENSRNOT00000046384 2 1 1 60 1 229755729 229755752 TGTCTTCCTTCTCATCTATCTCAG 59 229755769 229755789 AATCAACCCTACCATTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Urad ENSRNOG00000050360 ENSRNOT00000074791 1 1 1 184 12 9447049 9447068 CTTTCTCTGGCTTGGAAGAC 59 9455442 9455460 GGTCTTTAGGCTGGTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr36 ENSRNOG00000018078 ENSRNOT00000086011 1 1 1 63 1 164717410 164717428 TATGTGGCTATCTGCTGCC 60 164755520 164755538 GTGCAGTGTTTGTCTGTGG 60 NA DesignNoJunction Rattus norvegicus 81 St3gal6 ENSRNOG00000001653 ENSRNOT00000002255 2 1 1 80 11 44207121 44207142 TATTCTTGAGCTCCATCTTCCT 59 44207181 44212312 CCTCATTTGGGAACCAATAGC 59 NA Rattus norvegicus 81 Olr1530 ENSRNOG00000050245 ENSRNOT00000071470 2 1 1 60 11 43161902 43161921 GTTCCCACTTGTTCTCTGTC 59 43161938 43161962 TGACTTACATACATGAAGAGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1551 ENSRNOG00000046134 ENSRNOT00000041679 2 1 1 60 11 43521619 43521639 GTACAGACCCTACTCTTAACC 57 43521659 43521679 ACTACCTGTATTGAACCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd200 ENSRNOG00000002141 ENSRNOT00000058453 2 1 1 84 11 60380241 60380259 GACCTTTCTGCCATCTGTC 58 60380307 60383255 GTCACCACTTCCACTTGAG 58 NA Rattus norvegicus 81 AABR07060992.1 ENSRNOG00000045682 ENSRNOT00000011067 2 1 1 80 4 102290372 102290722 TTTGGATTCCAGCTTCCAG 58 102290765 102290784 AAGCTTGATCTCCAAGTCTG 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512,ENSRNOT00000087291 3 2 2 81 17 42921196 42921928 TTCAACAGGACTCAGACTAAGG 60 42921136 42921156 ATGACTGCAAGTCTTTGAGTC 59 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 3 2 2 80 5 138178073 138178779 CTTATTGCCCAGGTGTTCG 59 138178821 138178841 GATGAAGATGACACTGAGCAG 59 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248,ENSRNOT00000075545 1 2 2 105 20 10440080 10440099 TTGGATGTGAAGCACTTCTC 58 10440167 10441472 TGTAGCCATGGTCATCCTG 59 NA Rattus norvegicus 81 Rp1l1 ENSRNOG00000046326 ENSRNOT00000070815 3 1 1 92 15 47373747 47377203 GGGAAGAAGGTGGACTCTC 59 47377259 47377277 TTCCATCTCCAGACGTCTG 59 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 2 2 2 80 8 21953347 21953366 GAAACCCAAGGAAGACTCTG 58 21952397 21953305 ACTCTGCGTTTCTTATCCTG 58 NA Rattus norvegicus 81 Rn60_5_0525.3 ENSRNOG00000061839 ENSRNOT00000080857 1 1 1 80 5 47849779 47849916 GATTTAGCTCAGGTTGACCG 59 47849958 47849977 GCATCTTCCTCAGATCTTCC 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898,ENSRNOT00000086644,ENSRNOT00000011340,ENSRNOT00000041253 3 4 4 80 10 39207906 39207926 CACATTTATGATCTGGTCCGA 58 39206120 39207864 CACTGATATGGTCAGCCAC 58 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 2 2 2 86 12 50273627 50273645 CATCTCAGTGCTGAGTCCT 59 50273695 50277576 GTCTTCAGACCTAGGTGGC 60 NA Rattus norvegicus 81 Fjx1 ENSRNOG00000005347 ENSRNOT00000007077 1 1 1 60 3 92289885 92289903 TTCGATTACCTGACAGCCA 59 92289843 92289861 CCCACTGTAAGCTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fjx1 ENSRNOG00000005347 ENSRNOT00000007077 2 1 1 60 3 92289886 92289904 CTTCGATTACCTGACAGCC 58 92289844 92289862 CCACTGTAAGCTGAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr741 ENSRNOG00000053815 ENSRNOT00000087141 1 1 1 60 3 79121436 79121458 TCTCCCATGTATATCTTCCTCAG 59 79121398 79121420 CAGTAGAAGAGTAGAAGATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam12 ENSRNOG00000042158 ENSRNOT00000044927 2 1 1 80 1 79478314 79481726 GTCCAAGTAAACAAACGTGGA 59 79481768 79481786 ATTCTTCAAGGTCCTGGCC 60 NA Rattus norvegicus 81 Cxadrl1 ENSRNOG00000029029 ENSRNOT00000051939 3 1 1 82 8 106840898 106840916 CACCTATCAGTGCAAGGTG 58 106837909 106840855 CACTCCCAAGGATATTAGTGAC 58 NA Rattus norvegicus 81 Taar7d ENSRNOG00000045914 ENSRNOT00000051416 3 1 1 60 1 22488063 22488081 CAGAGATCTGCTCTCAGCC 60 22488021 22488041 ACAGGATCTGTTCAGGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000065685 1 1 2 80 17 39724825 39724934 AGCATTAATAGATCTGTCCAGC 58 39724766 39724786 TGTTTAAGGATGAGTGTCCAG 58 NA Rattus norvegicus 81 Ptprt ENSRNOG00000032656 ENSRNOT00000044466 2 1 1 80 3 157545551 157545569 AACATCATCGACGTGTTCC 58 157544622 157545509 TTTATACTGTTCCAGCGTCTC 58 NA Rattus norvegicus 81 Pcnxl4 ENSRNOG00000005568 ENSRNOT00000007369 1 1 1 80 6 95351283 95351401 CAGGTTTCTCTACCAAAGACAG 59 95351498 95351516 CTAGGCAAGCACTCTACCA 59 NA Rattus norvegicus 81 RGD1562871 ENSRNOG00000033458 ENSRNOT00000050807 1 1 1 60 X 79547189 79547208 GCAACATTATAGTGCACGAG 57 79547230 79547249 TGTAGTTGTGGATCCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909783 ENSRNOG00000050781 ENSRNOT00000071380 3 1 1 70 3 9403931 9403949 ACATCGGAGCCAGAATGAG 60 9403983 9404001 CCGTGGACTTTGAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc46a2 ENSRNOG00000017324 ENSRNOT00000023588 1 1 1 80 5 77166074 77170097 TTGTCCCAATTGGTGTTGTG 59 77166013 77166032 TTCAGCTCCTCTGTGTATCC 59 NA Rattus norvegicus 81 Scgn ENSRNOG00000016628 ENSRNOT00000022329 2 1 1 80 17 43367108 43370075 CTGATGAAAGAGCTTGCCA 58 43370119 43370137 ATCCAAGGGAGTTTCCAGG 59 NA Rattus norvegicus 81 Rn60_15_0100.1 ENSRNOG00000051054 ENSRNOT00000076077 1 1 1 60 15 5652259 5652279 GTTCACAGATTCCAGAAGACC 59 5652299 5652319 AAAGACCCAAGAAATCCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnt1 ENSRNOG00000053054 ENSRNOT00000088999 1 1 1 80 7 140236993 140237013 TTGGAACATGTCATCAAGGTG 59 140229596 140236951 TAGGTAGGCCTCACTCCTC 60 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000026900 3 1 2 85 1 85297347 85299436 GACTCCCTAGTCTACAGTCCT 60 85297282 85297300 AGAAGCAGGCAGAACTCTG 60 NA Rattus norvegicus 81 LOC100910173 ENSRNOG00000003918 ENSRNOT00000005292 1 1 1 80 10 104169494 104172530 GGGAGCCCAAGATCTACAG 59 104169432 104169452 CTTTGTAGAAGACGAAAGGGC 59 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638 1 1 2 109 13 90704016 90704034 GAAGGTGGAGGAAGAAGGG 59 90703284 90703943 TGCCTGTAACCTTGGACTC 59 NA Rattus norvegicus 81 Trim7 ENSRNOG00000002469 ENSRNOT00000003339 2 1 1 80 10 34195644 34198777 GAAAGAAGAGAAAGTGGAACTCTC 60 34198815 34198834 ACGCTCTTTAGATCCAAGGA 59 NA Rattus norvegicus 81 Pou3f4 ENSRNOG00000002784 ENSRNOT00000003724 3 1 1 60 X 82144545 82144564 TCAAGAACATGTGCAAGCTG 60 82144587 82144605 GATGAATCAGCCTCCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927,ENSRNOT00000077814 2 2 2 80 18 37965025 37965045 GAAACATCATCCATGACCTCC 59 37963798 37964984 AGCAGCTAGACTTTCATCCA 59 NA Rattus norvegicus 81 AABR07026059.1 ENSRNOG00000031959 ENSRNOT00000058884 3 1 1 90 16 61928567 61934379 GCCCAGAAGTATCTTTAGTTAGAC 59 61934428 61934446 TCTCTTCTAGCTTTGCCGT 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291,ENSRNOT00000011770 3 2 2 80 4 174761896 174764361 CTAAGAACGGAAAGACCGAG 58 174764404 174764422 CTCTTCCACAGTCATCCGA 59 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 1 2 2 80 9 9994156 9994259 AAGGTATTCATGCAGGTCCA 59 9994299 9994320 CCCTTCTTGAACCATGTTTCTC 60 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 3 2 2 83 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054948 ATAGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Ano9 ENSRNOG00000015830 ENSRNOT00000044393 3 1 1 80 1 213917658 213917776 AGGAAGAGGAAGAGATGGC 59 213917596 213917616 TGCTCAGATAGGAATGATGGT 59 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048916 ENSRNOT00000075829 3 1 1 60 8 3639619 3639637 TGAGTCCAAAGCTACCCAG 59 3639659 3639679 AGTGTAGAAAGCCAGAAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 2 2 2 83 4 7383682 7383700 GAGGTGTTGGACATGTACC 58 7383746 7384018 CATGTTGGTATCTCGAAGGT 57 NA Rattus norvegicus 81 Il13 ENSRNOG00000007652 ENSRNOT00000010121 3 1 1 93 10 38984084 38985330 ACCAGAAGACTTCCCTGTG 59 38983439 38983457 ATGTTGGTCAGGGATTCCA 59 NA Rattus norvegicus 81 Fnip1 ENSRNOG00000009104 ENSRNOT00000012671 1 1 1 80 10 39852044 39852067 GCACAGACTCATCCATATAACC 59 39853471 39853489 TGCTAACCGTACTGGAGAC 59 NA Rattus norvegicus 81 Tsc1 ENSRNOG00000011470 ENSRNOT00000016904 2 1 1 80 3 7254648 7254670 ATCTACCAGATTTCCTAGGTGAC 59 7254706 7254987 CTTTAGATATCGCAGCTTCTTCC 60 NA Rattus norvegicus 81 Slc30a3 ENSRNOG00000006204 ENSRNOT00000008126 1 1 1 80 6 26646932 26646951 ACAGTGACTACCACATTGAG 57 26646992 26647508 CAAAGGCCATTATCATGTTGG 58 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000046414 ENSRNOT00000000211 3 1 1 80 3 159016850 159016964 TTCCATATGGACATGAAAGCAC 59 159017005 159017023 AAGAATCTGCCACTCCCTG 59 NA Rattus norvegicus 81 Rn60_20_0038.1 ENSRNOG00000060903 ENSRNOT00000089589 3 1 1 60 20 1666614 1666636 GTCATCTTAGATCCAAGACTCCA 60 1666576 1666594 GACATGCTAGGTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emb ENSRNOG00000060329 ENSRNOT00000079907 3 1 1 80 2 49693420 49710766 TCACTGACAGAACAGACCAG 59 49710809 49710827 GAACGTGCATTCGAGTTCC 60 NA Rattus norvegicus 81 Rn60_20_0014.2 ENSRNOG00000061377 ENSRNOT00000085148 1 1 1 60 20 1334890 1334912 GAGAAGTTGCCAGTAGTTATCAG 59 1334852 1334873 ATACACCCATGAGTGAATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pif1 ENSRNOG00000015878 ENSRNOT00000021265 2 1 1 81 8 71127598 71129564 GTGAGATTAGGCAGATGTTCAG 59 71129605 71129624 TAATTCCATCTCGTCCCACC 59 NA Rattus norvegicus 81 AABR07018244.1 ENSRNOG00000058011 ENSRNOT00000088277 1 1 1 80 15 48976357 48976378 ACTTCGCCTACAGAAGGAC 59 48976422 48976440 ACATCACTGTCTCCAGGTG 59 NA Rattus norvegicus 81 Uhrf1bp1 ENSRNOG00000000495 ENSRNOT00000049592 3 1 1 80 20 7464971 7468275 TGCTCTTGGAGTCTGAGTC 59 7468317 7468337 CTTGAATGCCACTATCATCCA 58 NA Rattus norvegicus 81 AABR07062513.1 ENSRNOG00000001804 ENSRNOT00000040645 2 1 1 80 4 180541011 180541030 TTATGGAGAGCAGACACGAC 60 180538502 180540969 TCATGACATCCACCAGTTCC 60 NA Rattus norvegicus 81 LOC691162 ENSRNOG00000043039 ENSRNOT00000065471 3 1 1 89 5 162351304 162365283 GAGGGAAGTTCACCAAAGC 59 162365336 162365354 TGTAGTCTGGTCTGTGGTC 58 NA Rattus norvegicus 81 Csrnp3 ENSRNOG00000005359 ENSRNOT00000007197 1 1 1 80 3 52116462 52116480 GTGACTGCAGAGTGTTCTG 59 52116524 52118824 AAGACATCCGATCCACCTG 59 NA Rattus norvegicus 81 RT1-M2 ENSRNOG00000049590 ENSRNOT00000041074 2 1 1 80 20 1339222 1339427 AGTCCTTTAAAGGCTCCCA 58 1339160 1339178 TCATGTAGTGGGTCTCCTC 58 NA Rattus norvegicus 81 Cstf3 ENSRNOG00000012089 ENSRNOT00000016318 1 1 1 80 3 94603144 94605767 TGGGCTACAAGGATGTCTC 59 94605811 94605829 GAACAGGCACTATGGAAGG 58 NA Rattus norvegicus 81 Ppp2r2a ENSRNOG00000011158 ENSRNOT00000015318 3 1 1 80 15 43674929 43677565 TCTGACAGTGTTGTCATGAC 58 43674868 43674889 TAGAGTTATATCCCGCTTTGTG 58 NA Rattus norvegicus 81 Prss22 ENSRNOG00000039698 ENSRNOT00000060888 1 1 1 91 10 13373190 13373356 TGCTTTAGCAGCAATATGGAC 59 13373119 13373137 ACTTTCTGAGACCTTGGGC 60 NA Rattus norvegicus 81 Fam175a ENSRNOG00000002165 ENSRNOT00000002956 3 1 1 80 14 10424795 10426825 ACTGACTCAGATACGGAGG 58 10426869 10426887 GTCCATCTGTGAGTCAGTG 58 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 1 2 2 80 18 32351653 32351675 ATATAAAGGGTACAGAGACTGGC 60 32351714 32356445 CTTCATTTGGTGTCTGCGAG 60 NA Rattus norvegicus 81 Trub2 ENSRNOG00000043189 ENSRNOT00000064638 2 1 1 80 3 8343621 8344791 TCACCAAGGATTACACGGT 59 8343559 8343578 TCTTCTCTATCAACTGCCCA 58 NA Rattus norvegicus 81 Eef1a2 ENSRNOG00000012477 ENSRNOT00000016947 3 1 1 80 3 176659367 176660459 ACAAGATTGGTGGCATTGG 59 176659305 176659323 CAAAGGTCACCACCATACC 58 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 3 2 2 80 5 115371670 115387278 CCAATGATTAGGCAGAACGA 58 115371609 115371628 CTGCCTTGAGTAATCAGTCC 58 NA Rattus norvegicus 81 Tmprss7 ENSRNOG00000002145 ENSRNOT00000045521 1 1 1 80 11 60111935 60111953 GTATCACAAACCGCACCTC 59 60111996 60113774 GGAGCCCAGCATTTAATACC 59 NA Rattus norvegicus 81 RGD1564171 ENSRNOG00000037406 ENSRNOT00000056603 1 1 1 80 2 189414401 189415511 AGAAGACTGTCAACAGGTGG 60 189415553 189415572 CATACAGGTTTCTCCGTTGG 59 NA Rattus norvegicus 81 Acox3 ENSRNOG00000008474 ENSRNOT00000049798 2 1 1 80 14 80341328 80341346 TCACCGAACTGAGTCATGG 59 80338217 80341286 AGATGAATTCCTGGGTAGCAG 60 NA Rattus norvegicus 81 Nr3c1 ENSRNOG00000014096 ENSRNOT00000044287 2 1 1 80 18 31742702 31742722 CACACTCAACATGTTAGGTGG 59 31741716 31742662 TGTAAGTTTCTGAAGCCTGGT 60 NA Rattus norvegicus 81 Per2 ENSRNOG00000020254 ENSRNOT00000027506 2 1 1 80 9 98584050 98584068 GATGTGCCTTCCTACACCA 59 98583258 98584006 CACAGCAAACATGTCCGAG 60 NA Rattus norvegicus 81 LOC100910942 ENSRNOG00000013073 ENSRNOT00000017489 1 1 1 60 18 35249148 35249166 AGGTGTCTTTCTGCTCCTC 59 35249190 35251840 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Paf1 ENSRNOG00000019746 ENSRNOT00000026778 3 1 1 80 1 85365543 85365562 ATACAAAGACAGGGACAGCC 60 85365408 85365501 CTGTAATGCTGGGAGATCGA 59 NA Rattus norvegicus 81 LOC686066 ENSRNOG00000031434 ENSRNOT00000040570 2 1 1 60 3 8955469 8955487 CAGAAGGATGCCACATCTG 58 8955427 8955449 GGACCTTGAACTTTACATTACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311343 ENSRNOG00000027852 ENSRNOT00000036447 2 1 1 92 10 15951645 15951666 GGTCATTTCCAGAATGATTGCA 60 15949769 15951598 CATCTTGTAGTAACTGGAATGTCAC 60 NA Rattus norvegicus 81 Slc36a3 ENSRNOG00000021310 ENSRNOT00000037274 2 1 1 80 10 40484140 40486458 AATGCTGGATTGTTGGTGG 59 40484078 40484099 GTTCAGCAGGATATCCATACAG 59 NA Rattus norvegicus 81 Upk1b ENSRNOG00000027380 ENSRNOT00000004315 2 1 1 80 11 64549579 64549598 ATCTCTGGACCAATGGATCG 59 64549641 64552259 GAGAACCCAGAAGGTCCAG 59 NA Rattus norvegicus 81 Olr1071 ENSRNOG00000008464 ENSRNOT00000011188 3 1 1 60 7 9591933 9591951 TTGTAGGCTTCAGGGTCAG 59 9591891 9591909 ACAAGCAGAAAGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr596 ENSRNOG00000060685 ENSRNOT00000080503 3 1 1 60 3 76036032 76036052 ACTCTTGTGATTCCAATGCTG 59 76036074 76036092 CCTTCACATCCTTGTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ext1 ENSRNOG00000024886 ENSRNOT00000037809 2 1 1 80 7 92621291 92625875 AAAGCAAGGTTATGAGCAGC 59 92621230 92621248 CAGTGTCCTCATCAAGGCT 59 NA Rattus norvegicus 81 Ext1 ENSRNOG00000024886 ENSRNOT00000037809 3 1 1 80 7 92643787 92643808 CCGAAGTGATAAATTGGAACCA 59 92639306 92643752 TAGACCTGATTGTAGAAGGAATCTG 60 NA Rattus norvegicus 81 Olr459 ENSRNOG00000030662 ENSRNOT00000043965 2 1 1 60 3 73178534 73178553 CATTCTGTTGGGATTCACCT 58 73178493 73178513 GAGAAACATCACAAACAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 1 1 2 234 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116965068 116965089 GTAGACTTTACTAGCCATCGAC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 3 1 2 235 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116965070 116965090 TGTAGACTTTACTAGCCATCG 57 NA DesignNoJunction Rattus norvegicus 81 Cxcr5 ENSRNOG00000012430 ENSRNOT00000016580 1 1 1 80 8 48838210 48850450 GATGAGCTGTACAAGGAACTG 59 48838150 48838173 CTCTGTAGAACAGAAGATACTGTC 58 NA Rattus norvegicus 81 Dus3l ENSRNOG00000050381 ENSRNOT00000072703 1 1 1 80 9 10289542 10289640 GGATTCGAATCAGTGAGATGC 59 10289482 10289500 TGTAGGCATTGGCTTTGTG 59 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000071932 1 1 3 80 11 45888336 45888354 ACCGACTACAAGAAGCGAG 60 45899631 45901367 TTCCATAGACTCTCAGACTCAG 59 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998,ENSRNOT00000067442 1 2 2 120 7 115907977 115908174 GAGAACGACACCAGGTCTC 60 115907875 115907893 TCTTGGAACCTCTGTGCAG 60 NA InUTR Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 1 2 2 80 3 7053734 7053753 CAGAATGGAAGGAAGGTCAC 58 7053795 7054272 TATCCTGCTCTGGAAATCGT 59 NA Rattus norvegicus 81 LOC100911398 ENSRNOG00000045616 ENSRNOT00000075040 2 1 1 60 10 44331513 44331532 TTGTGCTGATACCCTTCCTG 60 44331553 44331573 TATACAACAACCAACACCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox7a2l ENSRNOG00000004526 ENSRNOT00000065464 1 1 1 113 6 6696608 6697744 TTCTTCCAGAAGGCTGACG 60 6696513 6696532 GATCAGGCAGTAGATGGTCC 60 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 3 3 3 86 17 23175159 23177431 TGGAGCATCATCAGCTGAG 60 23177478 23177499 AGGGTTTCCATTTGGAAATGTC 60 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 2 2 2 80 10 105124437 105124823 TATCCTGGATGCAAATGAGTC 58 105124065 105124083 TCAAACCGTTCAACGAGAG 58 NA Rattus norvegicus 81 Rn60_1_2448.1 ENSRNOG00000051301 ENSRNOT00000075935 2 1 1 60 1 237441578 237441597 CCTCCAAGTTATCAAGTCCA 57 237441619 237441638 CACCACACCCTTATCTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar2 ENSRNOG00000021021 ENSRNOT00000028532 1 1 1 60 1 89269483 89269502 CGTCATCATCGTTCAGTACC 59 89269442 89269460 GGTGATTTGGTTCTCGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prm3 ENSRNOG00000002564 ENSRNOT00000003451 3 1 1 60 10 4951784 4951804 TCAAGACAACTTCTCCCTGTC 60 4951825 4951844 CTCATCTTCCTCATCCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 1 2 2 80 3 5561761 5561779 CTGTGCCATCTCTGGACTC 60 5561822 5562850 GCGTTCATGATCATCCACAC 60 NA Rattus norvegicus 81 Asrgl1 ENSRNOG00000020202 ENSRNOT00000027459 1 1 1 80 1 225313895 225313914 GGCTTATGCAACCTCTACTG 59 225311052 225313853 CCTCCAGCTCCTATACAAGG 59 NA Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000024067 2 1 2 107 15 51757035 51757053 TTGCCTGACAATCTGTACC 58 51757123 51758435 CATCACATTCTCTGTAGCCA 57 NA Rattus norvegicus 81 Kcnab1 ENSRNOG00000056697 ENSRNOT00000077973 3 1 1 80 2 155921971 155925237 GTCAAATTTCAGATGAGGTTGC 59 155925278 155925296 CTTCTGCAGTGTCGAAGAG 58 NA Rattus norvegicus 81 Wipi2 ENSRNOG00000001114 ENSRNOT00000001476 3 1 1 82 12 13990382 13997878 AGGATAACACGTCCCTAGC 59 13990318 13990338 GATCTGTTCCAGCTTATCCAC 59 NA Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000004001 1 1 2 86 10 102193558 102193576 GATGATGACAACCACCCTC 58 102181700 102193508 GCTTGAAGACTCTGTGTCC 58 NA Rattus norvegicus 81 AABR07066994.1 ENSRNOG00000042034 ENSRNOT00000064584 2 1 1 60 9 25203648 25203666 ATGAATCTGACATGCTGCC 58 25203687 25203708 GCTTCACCATGTTCTTAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni3 ENSRNOG00000018250 ENSRNOT00000024640 1 1 1 80 1 72884312 72884767 TTTGAAGAGCTTCAGGACCT 59 72884810 72884828 TGCTTCCACGTCGTATCTC 60 NA Rattus norvegicus 81 Alg8 ENSRNOG00000012292 ENSRNOT00000016478 3 1 1 80 1 162349607 162349628 AGAAACCGAAGTTTGTTCTGTC 60 162349666 162349957 TGTACTGGAAATGAATGTGGTC 59 NA Rattus norvegicus 81 Olr1343 ENSRNOG00000047906 ENSRNOT00000051686 2 1 1 60 9 99659279 99659298 TAGCCATCATCCTCACTGTC 59 99659238 99659258 AGGAAGTAGTACATGGGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst5 ENSRNOG00000005545 ENSRNOT00000007336 2 1 1 112 3 144569963 144569983 GCAGAAAGTGATCAACTTTGC 59 144570057 144572688 TCTTCCCAGACACAACCTG 59 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777,ENSRNOT00000085681 2 2 2 80 10 81814353 81815447 TGACAGAAACTGTAATCCTCCA 59 81816483 81816501 GACGATTACCTGGAGTCCC 59 NA Rattus norvegicus 81 Bcl2l1-ps1 ENSRNOG00000018503 ENSRNOT00000024954 2 1 1 60 1 167765188 167765207 CCAGGGACAGCATATCAGAG 60 167765147 167765167 CATTGTTCCCGTAGAGATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr231 ENSRNOG00000019600 ENSRNOT00000026511 3 1 1 60 1 171188954 171188973 GCTATCACTCTCCTACACAG 57 171188994 171189014 CCTTAAGCTGTAGATGATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 2 1 1 97 1 238834002 238834020 TGAGAAGATGGCTGCTAGC 60 238833707 238833941 AAATAGCTTCCACCTGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Clpsl2 ENSRNOG00000038807 ENSRNOT00000059292 2 1 1 60 20 5792470 5792488 AAGTCCCATGTAGGCATGG 60 5794132 5794150 GACACAGGATGTTCAGGCT 60 NA DesignNoJunction Rattus norvegicus 81 N4bp3 ENSRNOG00000021731 ENSRNOT00000032386 2 1 1 131 10 34999076 34999580 TTTACTCAGGTGCTCGAGG 59 34998963 34998981 CATAAACAGCTGCAGCTGG 60 NA Rattus norvegicus 81 Meis1 ENSRNOG00000004606 ENSRNOT00000006157 1 1 1 85 14 103314092 103314110 AGATGATAGAGAAGGCGGA 57 103288805 103314043 CTCTATTCCAAGAGGGCTG 57 NA Rattus norvegicus 81 Anxa6 ENSRNOG00000010668 ENSRNOT00000014464 1 1 1 80 10 40336058 40336078 TTATAGAAATCCTGGCCACCC 60 40334394 40336018 GGGACTTGTGATAATCCTCCT 59 NA Rattus norvegicus 81 Aoah ENSRNOG00000054964 ENSRNOT00000087838 3 1 1 80 17 45895693 45901121 TGATGTTTGTAATGGGAGAGC 58 45895633 45895651 AGAGTCTGCATGACATTGG 58 NA Rattus norvegicus 81 Cdh17 ENSRNOG00000015562 ENSRNOT00000021612 1 1 1 80 5 25425821 25425840 AGCGAGGATACTGCTATAGG 58 25425880 25429208 CAGTGAATAACTCACAGTCAGG 59 NA Rattus norvegicus 81 Grid2ip ENSRNOG00000030927 ENSRNOT00000044378 1 1 1 80 12 13224601 13225358 CCTGACAGAGCTAAACTCC 57 13224539 13224557 TGCTGGCTTAGTGATTTGG 58 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 1 2 2 80 1 211381612 211383129 CATTGATGAGCTTTCTAAGACCC 60 211383820 211383841 CGATACCTCAACAGCTTATCAC 59 NA Rattus norvegicus 81 Olr490 ENSRNOG00000053834 ENSRNOT00000075227 3 1 1 60 3 73623792 73623812 AGCTTTCTCTACATGTGGGTC 60 73623752 73623775 GAATAGAGTACCATAGAACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000082119 1 1 6 80 1 261999069 261999089 GTTCTCACTCGTCTATCAGGT 59 261996994 261999027 GTCCTCAGCCATCTGAAGG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000082119 3 1 6 81 1 261999071 261999092 TCTGTTCTCACTCGTCTATCAG 59 261996996 261999029 CCTCAGCCATCTGAAGGAC 60 NA Rattus norvegicus 81 Chst2 ENSRNOG00000047734 ENSRNOT00000075305 1 1 1 60 8 103188959 103188977 GTGAGGTACGAGGATCTGG 59 103188917 103188936 CAAAGTCATACACCCTCCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634,ENSRNOT00000051480 3 2 4 80 20 2059772 2059912 CTCACACTGAGATGGAAACC 58 2059953 2059973 AATGATGACAAACCCAAGGAG 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 1 2 4 91 20 2058450 2058655 CTATAACCAGAGCGATAAAGTCTC 59 2058705 2058723 TATAGTGCGCTTGGAGGAG 59 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458,ENSRNOT00000083976 1 2 2 80 12 13544436 13549192 GTTTGGATCTGGAAAGTCAGAG 59 13549232 13549251 ACTTTCTCCAGTTCACTGGT 59 NA Rattus norvegicus 81 Ackr4 ENSRNOG00000011478 ENSRNOT00000015265 3 1 1 81 8 112645477 112646675 TGGACAAACAGTTGCTTGG 59 112645414 112645433 TAGTTCATCTCGGTGTCCTC 59 NA Rattus norvegicus 81 Mthfd1l ENSRNOG00000019582 ENSRNOT00000026564 2 1 1 80 1 40598259 40598279 ACTGCCGCTAATAACTTACTG 58 40598319 40599245 GTATAGAGCCTTGTCTGTCTG 58 NA Rattus norvegicus 81 Bmpr2 ENSRNOG00000022196 ENSRNOT00000035238 3 1 1 80 9 66657872 66657890 GCAAGTGGACATGTATGCG 60 66657933 66664386 ACAGATTCACCTGGGAAGAG 59 NA Rattus norvegicus 81 AABR07012329.1 ENSRNOG00000009602 ENSRNOT00000056479 3 1 1 176 2 193572439 193572457 CTCAACCACTCACAGGAGG 60 193572663 193572681 CTGCTGTCAATGCTTGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Mettl21c ENSRNOG00000011591 ENSRNOT00000015492 2 1 1 80 9 50755628 50759065 ACCCTCAGTAGAGTCTGAC 57 50755566 50755584 GTGTAGCTGGCATAGTCTG 58 NA Rattus norvegicus 81 Dsp ENSRNOG00000013928 ENSRNOT00000018649 3 1 1 80 17 27297197 27298283 CAGATAGACTTTAGATTGTGGGAC 59 27297140 27297160 GCAGAAGCTCTGATAGTTGTC 59 NA Rattus norvegicus 81 Lrrc59 ENSRNOG00000003524 ENSRNOT00000004941 3 1 1 80 10 82357103 82357123 AACCTTCAGCATTTGGATCTC 59 82357163 82357402 CCACTTCAGATTCTTGAGCTG 59 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000011984,ENSRNOT00000080155 2 2 2 80 7 98835850 98835869 AAAGCACTGATCGAAGAACG 59 98834573 98835812 CATGGAAATCTCTTCCTCAATCAC 60 NA Rattus norvegicus 81 LOC685964 ENSRNOG00000025934 ENSRNOT00000030426 3 1 1 81 4 122219075 122219373 CCTTACAGGTTACCTCATTTGAC 59 122219413 122219432 TGTCCTTCAGTGATTTGCTC 58 NA Rattus norvegicus 81 LOC685763 ENSRNOG00000028880 ENSRNOT00000049913 1 1 1 80 X 63915813 63915831 GCCATCAACTTCAAGAGGG 59 63915875 63915914 ACACTACATTCGGGACCAG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 3 1 2 81 13 90521522 90522245 TCTTATGCAGCAGTTACAGGA 59 90527711 90527729 CAAAGACCCTGAAGGTCCA 59 NA Rattus norvegicus 81 Btn2a2 ENSRNOG00000038877 ENSRNOT00000059403 1 1 1 80 17 43873616 43874548 TCATTCCAGAACCCTTCGT 59 43874589 43874610 GGATCACCATTACTATAGGCAG 58 NA Rattus norvegicus 81 Serpinb1b ENSRNOG00000034229 ENSRNOT00000022681 3 1 1 80 17 32553015 32553221 TCCGACTGAACAAGAAAGAC 58 32552954 32552974 GATCAGGAATGTAGCCAAAGG 59 NA Rattus norvegicus 81 Tmem218 ENSRNOG00000008757 ENSRNOT00000012060 2 1 1 80 8 39698836 39702022 TGAAATGAAGATTGTGGATGCC 60 39702063 39702081 AGGCCTCCAAGAAAGACAG 59 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678,ENSRNOT00000084388 1 2 2 80 4 115187390 115191301 CAGTGACAGGTATATCTTTGCG 59 115187331 115187350 CAGTCCTGATAGATGTGCCA 59 NA Rattus norvegicus 81 Adam12 ENSRNOG00000018384 ENSRNOT00000024974 2 1 1 80 1 206057472 206073958 CACTCGAAATTACACGGACC 59 206057411 206057429 CAAGTACTGAGGCTGACCA 59 NA Rattus norvegicus 81 AC126897.1 ENSRNOG00000051957 ENSRNOT00000083600 1 1 1 60 1 221994018 221994036 TGGTGAGGTATTTCCTGGG 59 221993973 221993991 AAGGCTGTGAACACTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Echs1 ENSRNOG00000018522 ENSRNOT00000025446 2 1 1 80 1 212574564 212574585 AAATCACTAGCAATGGAGATGG 59 212574069 212574523 CTTGCTTACAAGACCTGCT 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027393 3 1 10 153 18 30006929 30185396 TTGGACTCCTCTGAGAAGC 59 30188410 30188428 TGGATACTGTTGGCCACTG 60 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027372 2 1 10 62 18 30001620 30001638 GCGTCCAGTATCAGAGGTC 60 30001664 30185397 GGTTGAAAGCCATGATGGT 58 NA DesignNoJunction Rattus norvegicus 81 Shpk ENSRNOG00000019458 ENSRNOT00000026351 1 1 1 80 10 59779754 59779772 GATGTCTGACCAGAACGCT 60 59779816 59780585 GCCATTTGCAGTATGTCCG 60 NA Rattus norvegicus 81 Ebf3 ENSRNOG00000016102 ENSRNOT00000021702 2 1 1 80 1 209530536 209530555 GAAGTGTTACTGAAGAGGGC 58 209529910 209530494 CTTCAGGATGATCTCCTGGT 59 NA Rattus norvegicus 81 Psmd13 ENSRNOG00000014109 ENSRNOT00000019642 1 1 1 80 1 213642845 213642939 GAGAACTTCTCATGCATCCT 57 213642982 213643000 TGAAAGCATACAGGGTGTC 58 NA Rattus norvegicus 81 Tceal6 ENSRNOG00000046390 ENSRNOT00000074255 1 1 1 60 2 102370297 102370315 AGGAAGAGCTGAGGAAGAG 58 102370255 102370273 TGTGCATCTCTTGGTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpv3 ENSRNOG00000019606 ENSRNOT00000026596 1 1 1 80 10 59859973 59859991 GGTGAAGTGGACTGAATGG 58 59860035 59860347 TTTGAATCTGCTGTCCGTC 58 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000080041 1 1 2 106 1 211256501 211256525 GCTTCCGTCTCTATTTATAATGGTG 60 211251541 211256438 TTCCTCAGACTGTCACAGTG 59 NA Rattus norvegicus 81 Bbs4 ENSRNOG00000026171 ENSRNOT00000031262 3 1 1 80 8 64140435 64140453 ACTCTTTCAGACGTGTGCT 59 64139350 64140395 CCCAGAAGAAATAAAGATCTGGC 60 NA Rattus norvegicus 81 Ywhae ENSRNOG00000005290 ENSRNOT00000007100 2 1 1 81 10 63908720 63911210 GGCAAATGGTTGAAACTGAG 58 63911254 63911272 TTAGCTGCTGGAATGAGGT 59 NA Rattus norvegicus 81 Cnbp ENSRNOG00000010239 ENSRNOT00000013884 2 1 1 80 4 119750486 119750505 TCCTGACATCTGTTATCGCT 59 119750270 119750444 CAGTTATAGCAGGCATCCTC 58 NA Rattus norvegicus 81 Pde6c ENSRNOG00000016593 ENSRNOT00000022317 1 1 1 80 1 256854509 256860839 TACCAAATGAAGTCCACATCTC 58 256860876 256860898 CTTGCTATATTCCAGGTGATGTC 59 NA Rattus norvegicus 81 Smyd5 ENSRNOG00000015589 ENSRNOT00000020909 3 1 1 80 4 117228663 117228685 CTGTATCAGCTACTTAGACTGCT 60 117228723 117228822 AACAAGTAGTTCTCCCTGAGG 59 NA Rattus norvegicus 81 Prkx ENSRNOG00000060168 ENSRNOT00000090932 2 1 1 80 X 45084019 45084358 AGGAAACTTAAGCCACCCA 59 45083957 45083977 CTCACCCTCTGGATAAGTCTC 59 NA Rattus norvegicus 81 Olr264 ENSRNOG00000054146 ENSRNOT00000089570 1 1 1 60 1 172664442 172664462 TTATGTAATGCCCAAGTCCAG 58 172664402 172664421 GTAGAACACAGACAACACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm27 ENSRNOG00000027250 ENSRNOT00000036613 3 1 1 80 18 36646814 36646834 AGTTACAGCAAGACATGAGGA 59 36646872 36647013 GTTTAGAGATCAGCATCTTCTGG 59 NA Rattus norvegicus 81 Itga4 ENSRNOG00000004861 ENSRNOT00000006880 2 1 1 80 3 66253565 66253585 GGACCAAGTGAAAGACAACAG 60 66253627 66255808 GTCACAAACCCGTGAACAG 59 NA Rattus norvegicus 81 RGD1562200 ENSRNOG00000026157 ENSRNOT00000030771 1 1 1 82 X 45521426 45522081 GGATAGAGGCATGTACCAGG 60 45521363 45521381 ATATCCAGGTGTCAAGGGC 59 NA Rattus norvegicus 81 Papl ENSRNOG00000047901 ENSRNOT00000071691 3 1 1 80 1 85145913 85145933 TTCTTTCTCCACTATGGTCGT 59 85145972 85146068 ATTCTTATTGGCTTTCTGGAGG 59 NA Rattus norvegicus 81 Afap1l2 ENSRNOG00000017164 ENSRNOT00000023113 1 1 1 80 1 277755240 277761263 CTCCACCCAAGATGATTCC 58 277755178 277755196 CAGCCTCTTCATAGTAGCC 57 NA Rattus norvegicus 81 Gpr141 ENSRNOG00000059698 ENSRNOT00000092193 1 1 1 80 17 47241622 47262226 CATCACATTGTCCATGGAGC 59 47262268 47262287 TGTTCCTGGGATCTGTATGC 60 NA Rattus norvegicus 81 Rrh ENSRNOG00000053349 ENSRNOT00000085096 1 1 1 80 2 235239377 235239396 ATCATAGCTCCACTGTTTGC 58 235237894 235239336 CTTCCGAAACTTCTTATTGGC 58 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 3 3 3 81 1 32113642 32114892 GCACCTGTACAATGCTGAC 59 32112924 32112942 ATGTAGTATGAGCCTCCCG 58 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 1 2 2 80 6 23527230 23527248 TTAAAGTTACGGGACCAGC 58 23510535 23527186 GGCCATAACCTCTTCACAG 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000034237 ENSRNOT00000043244 1 1 1 60 14 33031219 33031239 TTCAGAATCAAGCGATTCCTG 59 33031179 33031198 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464,ENSRNOT00000017472 2 2 2 80 4 157232552 157232570 AATGAGGTGCTCAAGAGTG 58 157232613 157233242 GATCAACAGAGACACCTGAG 58 NA Rattus norvegicus 81 Stfa3 ENSRNOG00000033933 ENSRNOT00000051936 1 1 1 80 11 67309137 67312666 CTGACAAGGTCAAACGACAG 59 67312705 67312727 CTTGAGATTTATACTCGACGACC 59 NA Rattus norvegicus 81 Arl11 ENSRNOG00000014653 ENSRNOT00000019646 3 1 1 81 15 41643600 41643619 GAAGCTTGATTGTGGAGAGG 59 41643663 41644371 CTCGTACATGGAGCTCCTC 59 NA InUTR Rattus norvegicus 81 Olr1155 ENSRNOG00000032512 ENSRNOT00000048500 1 1 1 60 8 19332193 19332212 CTGTTGTACCTCAAATGCTG 57 19332152 19332172 TCTTTCATGTCTCTGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf3 ENSRNOG00000015331 ENSRNOT00000041552 2 1 1 94 4 155421669 155421688 TATGCTACGTGAAGGAGCTG 60 155418516 155418535 ATCTTGGGAAGGTTTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 3 2 2 80 4 120446335 120446354 AAGGCATCAACATCAGTGAG 58 120446397 120447132 GCTGCACTGAATACCTCAG 58 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076,ENSRNOT00000055238 1 2 2 80 10 88923987 88924006 TCCCAATTATGGACACTGGA 59 88924049 88924754 TCTTCTCGAAATTGGCCTC 58 NA Rattus norvegicus 81 Rn60_X_0639.3 ENSRNOG00000051322 ENSRNOT00000076936 3 1 1 60 X 63824441 63824461 CTGAACAGCCCTATGTATGTC 58 63824483 63824501 GGGTAAGACTGAAGGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam189b ENSRNOG00000020518 ENSRNOT00000027828 3 1 1 80 2 188496591 188496805 ACTCTAGTGATCTCTTTCTTCTCC 59 188496842 188496862 CTTACAGGAGAGGACAGAACC 60 NA Rattus norvegicus 81 Eps15l1 ENSRNOG00000013502 ENSRNOT00000018960 1 1 1 80 16 19171815 19172687 CAGTTACAGACCCATTTGGA 58 19172728 19172748 TCTTGAAGAAGTCATCACTGG 58 NA Rattus norvegicus 81 Zfp40 ENSRNOG00000011675 ENSRNOT00000015520 3 1 1 60 1 62557106 62557130 AGACATCAGAGAATTCATAGAGGAG 60 62557070 62557089 AGCATTTGTCACATTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir295-1 ENSRNOG00000060612 ENSRNOT00000091889 1 1 1 60 1 64536680 64536700 TTTGGTGAGACTCAAATGTGG 59 64536640 64536661 AAAGTAGTAGCACTTTCTACGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1749 ENSRNOG00000048828 ENSRNOT00000073981 2 1 1 60 20 1937283 1937305 ACTGAACCCTCTCATTTATACCC 60 1937325 1937343 AAGTCTCCAGAATGCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 2 1 1 62 X 67564138 67564321 AAGGTAAGAAGGCCAAAGG 57 67564347 67564365 AATTCTTGGCAGGGTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Cenpo ENSRNOG00000050111 ENSRNOT00000070979 2 1 1 80 6 28650813 28651989 GCAGACCAACTTGAGAGTG 59 28650751 28650769 GAATGACAGCAAGTTGCAC 58 NA Rattus norvegicus 81 Tpp1 ENSRNOG00000019212 ENSRNOT00000026280 1 1 1 80 1 170589566 170589707 CTTCATACCAGGAGGAAGCA 59 170589505 170589529 CACTAGCATTGAAGTAACTAGATGG 60 NA Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 2 2 2 80 10 831376 833074 TCACTAAAGTAAAGCCGCTG 58 833116 833135 TGATCTTCTGCATCTCCTCC 59 NA Rattus norvegicus 81 AABR07038477.1 ENSRNOG00000038369 ENSRNOT00000058420 2 1 1 80 X 50599081 50599101 GAAGAGATCCAGGAAGATGCT 59 50599141 50601824 CCATAAGAACAATTGCAAGCC 59 NA Rattus norvegicus 81 Enox1 ENSRNOG00000047817 ENSRNOT00000074868 2 1 1 80 15 59746514 59746535 GAAGAATTTCTGTCACATTCGC 59 59746576 59749703 AATCGCATTCGGTAACCAG 58 NA Rattus norvegicus 81 Pcp2 ENSRNOG00000000993 ENSRNOT00000001313 1 1 1 104 12 2173670 2173688 CTCATGGATATGCTGGCCA 60 2172554 2173602 CATTCCATCCTTGGGACCA 59 NA Rattus norvegicus 81 Spata31d1b ENSRNOG00000043261 ENSRNOT00000064170 3 1 1 80 17 5334319 5334379 CAAAGGAAGAGAAGCTGCC 59 5334257 5334275 CCTTGCTTCTTGCTGAGTG 59 NA Rattus norvegicus 81 Cnot6 ENSRNOG00000054891 ENSRNOT00000084509 1 1 1 80 10 35156523 35157820 TTAAGCCTGAAAGGAAATCCAC 59 35156464 35156484 GTTCAGTAGCCTTCTTGTTCC 59 NA Rattus norvegicus 81 Sec24d ENSRNOG00000014872 ENSRNOT00000064809 1 1 1 80 2 227481275 227481294 TGAATGCCCAGTATCAACCT 59 227481337 227481630 GTCCATAGTTGGCTTGCTG 59 NA Rattus norvegicus 81 LOC100911822 ENSRNOG00000020799 ENSRNOT00000028222 2 1 1 86 1 88687239 88687337 GCCAGGAATGTAATAACATGCT 59 88687598 88687616 GCTGGTAATCGCAATTCCG 60 NA Rattus norvegicus 81 Ap5b1 ENSRNOG00000026114 ENSRNOT00000036185 3 1 1 80 1 220948856 220948874 TGAAGGTGAGGATTTGGGT 59 220948915 220949039 AGTAAGGAAACCTTGATCAGCT 60 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 2 1 2 107 6 93440013 93440031 TGAACTAGAGCTCAGCTGG 59 93440427 93441797 TCCTTCAAAGATTCCTTGGC 58 NA Rattus norvegicus 81 Mboat1 ENSRNOG00000027125 ENSRNOT00000036978 1 1 1 80 17 36072593 36076059 CATCTGGAAGATCGAGACTG 58 36072532 36072552 CATTTCAGCCATGTAGATGTC 57 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 2 2 2 80 12 13902578 13903161 AATTCAATGTGCTGAGCCA 58 13903202 13903223 CCTGTATCTTTGCTAGTCTTCC 58 NA Rattus norvegicus 81 Mob1a ENSRNOG00000059474 ENSRNOT00000090987 2 1 1 80 4 115031904 115031925 GCTGTATGGAACCATTACAGAG 59 115031964 115033030 CAGTGGTATTCATACCTGGGA 59 NA Rattus norvegicus 81 RGD1561694 ENSRNOG00000029107 ENSRNOT00000040676 3 1 1 60 14 73674928 73674949 AGTTTGAAGATTTGGCCAAGAG 60 73674966 73674988 ACATAGTTCTTCATCTCCCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqcb1 ENSRNOG00000038868 ENSRNOT00000066616 2 1 1 80 11 66857662 66857682 TACTGGTATTGGCTGAATCCC 60 66855458 66857625 GCAGACTTCTAAGTCCTTTATAGC 59 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 1 2 2 80 8 111564425 111564445 CACATTCCTCAACAAGTTCCT 59 111564486 111565552 AGATTTACAGCACCGATGAG 58 NA Rattus norvegicus 81 AABR07044581.1 ENSRNOG00000030677 ENSRNOT00000046763 1 1 1 80 20 11498052 11498071 CGATGGCTTCAGGATTTCTG 59 11497974 11498010 TTGATGAAGAGGTCCATGGG 60 NA Rattus norvegicus 81 Pip5k1a ENSRNOG00000021068 ENSRNOT00000028609 1 1 1 80 2 196232747 196233415 GTGGAGCCAGATATACACCT 59 196232686 196232706 AGGTGAACCCTCACTTATCTC 59 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000080122 2 1 3 65 20 2099718 2100541 ATTCCCAAGCTGACCTGAC 60 2099671 2099689 AGTCAGAGGAGATGAGCAG 58 NA DesignRelaxed Rattus norvegicus 81 Olr1119 ENSRNOG00000034283 ENSRNOT00000045458 1 1 1 60 8 18115291 18115309 ATCTCTGACTCACACCTCC 58 18115249 18115268 CAGCAAAGGACAGATTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxn4 ENSRNOG00000000691 ENSRNOT00000065060 3 1 1 80 12 48118612 48118630 TCAACATCAGCACTGACAC 58 48118674 48119676 ACAGGTTACCCTGTAGAGC 58 NA Rattus norvegicus 81 LOC100910409 ENSRNOG00000049831 ENSRNOT00000075290 1 1 1 60 8 42943695 42943714 CTATGATCGCTATGTTGCCA 58 42943654 42943675 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910409 ENSRNOG00000049831 ENSRNOT00000075290 3 1 1 60 8 42943880 42943900 ACCCATGTACTTCTTCCTCAG 59 42943840 42943860 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf185 ENSRNOG00000019325 ENSRNOT00000026134 1 1 1 80 14 83663864 83663885 AATGCAACATATGTCTGGACAC 59 83660747 83663824 GATGTAAACACGGCCAACAG 60 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 3 2 2 93 5 100957721 100957739 TACACTGAGCTGCTTACCT 58 100943623 100957666 CAAAGAGGTCCAAATTACGTG 58 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 1 2 2 81 9 67781918 67781936 TGTGCACGACCCTAATAGC 60 67781980 67784178 TGAGGTCATACCTGCAAGTC 60 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445,ENSRNOT00000064637 1 2 2 80 20 12889855 12889878 AGACCCTCTCAGTCTTTAATACAC 60 12889136 12889817 CACGAGCCACCTTTATACAC 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000081146 1 1 3 80 9 65053794 65054481 CATGCTAGAATCATCTCCCTC 58 65054521 65054541 CACATCTTGAGCTGTTATCAC 57 NA Rattus norvegicus 81 Tie1 ENSRNOG00000020173 ENSRNOT00000027414 2 1 1 80 5 137306885 137307045 AGATGCTGAAAGAGTATGCG 58 137306824 137306842 GGTGTCCTAGTTTGCACAG 59 NA Rattus norvegicus 81 Mir17-2 ENSRNOG00000035592 ENSRNOT00000053715 1 1 1 60 X 140117940 140117959 TCAAAGTGCTTACAGTGCAG 59 140117899 140117918 TGTAAGAAGTGCTTGCAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578,ENSRNOT00000088720 3 2 2 80 6 72399349 72399368 TTGTTAAGTGTACTGGGCCT 59 72397850 72399311 GGCAGGCAAATCATAACTATAGTC 60 NA Rattus norvegicus 81 AC106648.1 ENSRNOG00000042252 ENSRNOT00000065781 3 1 1 115 10 97647560 97647578 GATCTGGTCTGGTTCGGTC 60 97647461 97647479 ACAGCAACGTGATCAAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 1 2 2 105 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199591 220199609 TGACATCTGGCTTCACTCC 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000003713 ENSRNOT00000046768 1 1 1 81 X 45251456 45251477 ACAGAATACATGAACTTCGTGG 59 45250791 45251414 TTGGACAGGTGTCTGTGTC 60 NA Rattus norvegicus 81 Ppp4c ENSRNOG00000019813 ENSRNOT00000026909 2 1 1 80 1 198221433 198221617 GGAGCTGTTCAGAGTAGGT 58 198221371 198221389 CTGTAGAAACCACGGTCCA 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860,ENSRNOT00000074644 1 2 2 80 2 231876574 231876687 ACGGTATATGTGGAGTTGC 57 231876512 231876531 AACAACATTGCCACATTTCC 58 NA Rattus norvegicus 81 Olr1219 ENSRNOG00000046384 ENSRNOT00000074713 1 1 1 60 8 42260420 42260438 GGACTGACAAACCAACCTG 59 42260460 42260480 TATAGTTCACCAGGAACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyn ENSRNOG00000008180 ENSRNOT00000011130 3 1 1 80 5 16592234 16592253 CCAGTACGTAATACTGACCG 58 16592296 16595958 TTGAGATTCAGGAACTGGC 58 NA Rattus norvegicus 81 Cnih4 ENSRNOG00000003717 ENSRNOT00000004939 3 1 1 88 13 99476054 99478190 TTAAACAAGTGGGTGATACCAG 58 99478238 99478257 AGAAGGAAGATGACCCAGTG 59 NA Rattus norvegicus 81 Vom1r34 ENSRNOG00000049710 ENSRNOT00000064246 3 1 1 60 1 71955046 71955066 CCACATTCATTAGCATCATGG 58 71955006 71955025 TGTCTATGGAGGAGAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2 ENSRNOG00000050110 ENSRNOT00000042374 2 1 1 83 11 67466272 67469369 ATCGCTGACAAGGTCAGAC 60 67469413 67469434 TTGAACTTTATACTGGACGGCT 60 NA Rattus norvegicus 81 Osbpl3 ENSRNOG00000010011 ENSRNOT00000013828 2 1 1 80 4 80089018 80089847 CAAGAGCCAAACTGATATTGAGAG 60 80088961 80088981 GACTTCTTCACAGACATCACG 59 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 2 3 3 80 18 39476824 39476844 AGAAGTGTGAAGATGGAACAG 58 39476884 39478984 CATGATATTCTGGGTCTTTGC 57 NA Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000077087 1 1 2 241 12 18931540 18931558 TTCCCGGTACGGATAAACC 59 18937641 18937660 ATCTTGCCTGGATTTCTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000065347 2 2 3 192 13 50498918 50498936 CTCATGGAGCATGGAGGAG 60 50497211 50498763 ATCTTTGAAACGCTTGGTCC 59 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288,ENSRNOT00000088995 2 2 2 80 7 70464192 70464948 GGAGAAGTTGTCATGGTGC 59 70464130 70464151 CACTACCTGGACATTGTATCTG 58 NA Rattus norvegicus 81 Pithd1 ENSRNOG00000010873 ENSRNOT00000014458 1 1 1 81 5 154325202 154331791 GATGAGACTGTACAAGAACATTCC 60 154325144 154325164 TCGGTTCAGACTAAAGGTCTG 60 NA Rattus norvegicus 81 Robo4 ENSRNOG00000050964 ENSRNOT00000060300 2 1 1 82 8 39888321 39888340 ATCAGGACAGTGTACTCACC 59 39888385 39888531 TACACTGTTCGTGGGTGTC 60 NA Rattus norvegicus 81 Ammecr1 ENSRNOG00000022166 ENSRNOT00000042639 2 1 1 80 X 114232512 114232531 GATGTGCTCTACTGTCACCT 59 114183313 114232469 TACAAACAGTGGGTAGGGC 59 NA Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 1 2 2 80 X 128198223 128198244 GAAATTACAGAGGAGATGACGA 58 128196291 128198182 GAAATAACCACCCTCAGCC 58 NA Rattus norvegicus 81 Stk32c ENSRNOG00000006962 ENSRNOT00000009178 1 1 1 80 1 211452073 211452963 CACATCATCCACAGAGATGTC 59 211451926 211451945 AATGTTGAAATCGGTCAGGT 58 NA Rattus norvegicus 81 Stk32c ENSRNOG00000006962 ENSRNOT00000009178 2 1 1 80 1 211452069 211452958 CATCCACAGAGATGTCAAGC 59 211451921 211451939 GTGGCAATGTTGAAATCGG 58 NA Rattus norvegicus 81 LOC100360449 ENSRNOG00000030476 ENSRNOT00000042201 1 1 1 60 3 4282517 4282535 TGTGTATGCTCACTTCCCT 58 4282559 4282577 GATTTCAACCAGAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000087984 2 1 2 94 18 40596207 40596282 AGCCAAAGAATAAAGGCAAAGG 60 40596332 40596355 CCCATCCTCTTTAAACACTAACTC 59 NA DesignNoJunction Rattus norvegicus 81 Ly6e ENSRNOG00000007091 ENSRNOT00000076364 3 1 1 60 7 116356654 116356672 TAACGCTGACTTGTCTGCT 59 116356696 116356714 CCGCTCTAGTTTACAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 2 2 2 80 7 76229185 76229204 CCTTCAGCATGTATGACCTG 59 76205506 76229142 TCTTGTAGATTGCCTGCAC 58 NA Rattus norvegicus 81 Fem1c ENSRNOG00000003578 ENSRNOT00000004784 3 1 1 81 18 40498871 40517165 TGTTAAAGGCAATACTGCACTG 60 40498811 40498830 GGCACAATACATAAGCAGCA 59 NA Rattus norvegicus 81 Ceacam18 ENSRNOG00000022701 ENSRNOT00000038229 3 1 1 80 1 99566522 99566541 GTGCCATAGAAGATGTCCCA 60 99566582 99569150 ACACATAGTCTGGTCCATAGG 59 NA Rattus norvegicus 81 Ppp1r27 ENSRNOG00000036690 ENSRNOT00000054959 1 1 1 92 10 109728190 109728491 ACATAGCCAGGTATCTCATCTC 59 109728119 109728137 TGAAGTCCGGGTCAATGAG 59 NA Rattus norvegicus 81 Yipf4 ENSRNOG00000005610 ENSRNOT00000007607 2 1 1 87 6 22130195 22133563 GGACAGTTTAGGGTGGTCTC 60 22130127 22130145 CTCCACCAAGAACCCTAGC 60 NA Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 2 2 2 80 17 54375303 54380670 TAGTACAAGCTGGTTTGGGA 59 54380713 54380731 GATGCCATTTCAATCGCTG 58 NA Rattus norvegicus 81 RGD1561151 ENSRNOG00000034183 ENSRNOT00000042552 1 1 1 92 X 96667876 96668815 AAAGTGAAGACACAAGCAGG 59 96668870 96668888 AAGGCCTCTTAAGCAGAGG 59 NA Rattus norvegicus 81 LOC685217 ENSRNOG00000003548 ENSRNOT00000062053 2 1 1 99 4 5997002 5997023 GCATCTCTATCAAGTTACAGGA 58 5995914 5995936 GGGCTGAGGAACATAATTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Slc7a13 ENSRNOG00000024903 ENSRNOT00000035685 3 1 1 83 5 33793941 33793959 TGTGGTGTACTTACTGGCT 58 33794006 33801684 GTAAGAGCCACAGCATCTG 58 NA Rattus norvegicus 81 Apool ENSRNOG00000004512 ENSRNOT00000005997 3 1 1 81 X 83714284 83714304 AGCCTGGTTATTTACAAAGGG 58 83714347 83717974 AGATAAATGCCCTTGCACC 58 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 1 2 2 80 2 188666798 188666816 TCACCTGGGAACAGTTGTC 60 188666631 188666755 TGGTAGGAAATCTGTGGAGG 59 NA Rattus norvegicus 81 Furin ENSRNOG00000011352 ENSRNOT00000015521 2 1 1 80 1 142187668 142188030 CCTATTAGCTGCCAGACCA 59 142187606 142187626 TCATCCCAGGAATGAGTTGTC 60 NA Rattus norvegicus 81 Olr1163 ENSRNOG00000030569 ENSRNOT00000045215 1 1 1 60 8 20173000 20173018 ATTCCTGTCCATGTTCCTG 57 20172958 20172978 GCTGGTGAGTAAGACAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf14 ENSRNOG00000047730 ENSRNOT00000074247 1 1 1 80 9 9762692 9763021 GATACAAGATCAACGATCTCACC 59 9764771 9764789 CCACCAATGCCTATCAAGC 59 NA Rattus norvegicus 81 Rn60_5_0815.1 ENSRNOG00000046024 ENSRNOT00000059374 1 1 1 90 5 77297667 77298380 TTTGTTGAGCATGACGGAG 59 77297595 77297616 CGTTCTTGACATTAACAAGGTG 58 NA Rattus norvegicus 81 C4bpb ENSRNOG00000004125 ENSRNOT00000005505 1 1 1 80 13 47387964 47387983 CCTATCCTACCTGTGAGTCC 58 47387368 47387924 GAAAGGCAAGAATAGCTTTCTC 58 NA Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076,ENSRNOT00000004269 1 2 2 80 10 25833451 25833469 ACCAAGTATGAAATGGCGT 57 25832958 25833407 AGGGCTGTCAGTAATAGGT 57 NA Rattus norvegicus 81 Wfdc11 ENSRNOG00000033980 ENSRNOT00000067008 1 1 1 80 3 161130631 161131523 AAGTATTCTCCGGGAGAACTG 59 161130571 161130594 TCTAGAACACTTCTTGGTACAGTC 60 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 2 1 2 105 2 235312002 235321203 AGTACAAGTGTAGCGACGG 60 235321270 235322661 CCAATGTTCAGATGAACACCA 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000052369 2 1 4 81 14 22433567 22436176 AATGACATCCTGGGTCACC 59 22436217 22436239 CATGATAGATTGCCTCATAGAGG 58 NA Rattus norvegicus 81 Rn60_5_0814.8 ENSRNOG00000051121 ENSRNOT00000077051 3 1 1 60 5 78063205 78063225 TATTCATCAGAGATCCCACAC 57 78063165 78063184 GGCTTTACCACATTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1257 ENSRNOG00000045625 ENSRNOT00000072172 1 1 1 60 8 42430707 42430727 TTCATTGACCTCTGTTACTCC 58 42430667 42430685 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213,ENSRNOT00000047823 3 2 2 80 X 77519796 77519816 CTCTTTAAACTGAGCCCATCG 59 77519650 77519756 TTCACTGAAATTACTGCAGCC 59 NA Rattus norvegicus 81 Hepacam2 ENSRNOG00000009711 ENSRNOT00000012995 3 1 1 80 4 28426193 28430175 GTCACTGTTGATGATCCTGTC 59 28426133 28426152 AATGTTGCCCACATACTCCA 60 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 1 3 3 82 17 43667356 43667374 GTGGGATCACCATTTGTGC 60 43667419 43668790 CATGGTTCCTCCTGAAACCT 60 NA Rattus norvegicus 81 F11r ENSRNOG00000004414 ENSRNOT00000006141 2 1 1 80 13 89846698 89846898 AGATCACAGTTCCCTATGCA 59 89846941 89846959 CATTGTCTTTCCGGGTCAC 59 NA Rattus norvegicus 81 Nrbp1 ENSRNOG00000050570 ENSRNOT00000074938 2 1 1 80 6 26488298 26488414 CAGACTCTGTACTCTCAGTCAC 60 26488146 26488164 TGTCAGAGGGTAGATCCCA 59 NA Rattus norvegicus 81 Tuba3a ENSRNOG00000032967 ENSRNOT00000052352 2 1 1 81 4 179908969 179908989 GCTATTGCTACCATCAAGACC 59 179909027 179910331 GGTAGTTAATACCCACCTTAAAGC 59 NA Rattus norvegicus 81 Rn60_5_0815.3 ENSRNOG00000050682 ENSRNOT00000052175 3 1 1 81 5 77366874 77367244 CCTCTATAGTAGAACAAAGGATCTG 58 77366817 77366835 CCTAGTGATTACATGCGCC 59 NA Rattus norvegicus 81 Mir224 ENSRNOG00000060270 ENSRNOT00000088901 2 1 1 60 X 152223797 152223817 TGGTTCCGTTTAGTAGATGGT 59 152223757 152223776 CTTTGTAGTCACTAGGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad1 ENSRNOG00000018063 ENSRNOT00000024557 1 1 1 80 2 60468922 60468941 CTCCCATCTTGACTATCCCA 58 60468981 60469289 AGTTTGTATCTGTTGATCTGGG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909,ENSRNOT00000004921 1 2 2 80 X 104778705 104778838 GGCCTTCAGAATACACTAAGTC 59 104778646 104778665 TTCTATCTCCCAAGATGCCA 58 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002,ENSRNOT00000017859 1 2 2 80 9 60986768 60987045 TGGAAGAGAATCAAGACATGAG 58 60987084 60987104 CAAGGTTCTGTTTAGTTTCCC 57 NA Rattus norvegicus 81 Pprc1 ENSRNOG00000018561 ENSRNOT00000025221 3 1 1 81 1 265825099 265825117 CTGAAGCAGAGGTTCTCTG 58 265825161 265825608 CGAAACCATAGTTGTCACCT 58 NA Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000047385 ENSRNOT00000073777 1 1 1 60 10 35559009 35559030 CAATGAGACTGATTGTCATGTG 58 35559045 35559069 GTATGGCTATAAAGTAACTGAGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab11a ENSRNOG00000011302 ENSRNOT00000015598 3 1 1 80 8 70204448 70204468 GGGCAATAAGAGTGATTTACG 57 70203387 70204407 GACAAACCATTCTTCTCTGC 57 NA Rattus norvegicus 81 Ormdl1 ENSRNOG00000042961 ENSRNOT00000065581 1 1 1 140 9 53116483 53116502 TATTCTTGCTGGTGAGGTCG 60 53111414 53116380 ATGGGTTGTCTTCTTCCCG 60 NA Rattus norvegicus 81 Ccdc78 ENSRNOG00000022331 ENSRNOT00000020363 1 1 1 80 10 15156211 15156233 GTATTGCCTCTATGGAGTATAGG 58 15156273 15156673 CTGGGACAACATTCTCTGC 59 NA Rattus norvegicus 81 Chmp2b ENSRNOG00000040257 ENSRNOT00000000904 3 1 1 80 11 2667124 2667143 TGATGAAGAGGAAAGCCAGG 60 2666888 2667081 GCTTTGGCCATCTTTCCAG 60 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 1 3 3 80 18 31077933 31077953 TTTCAATATCCCTCTCCTGGT 58 31077776 31077893 GATGTTTCATATGTCCAGCAC 58 NA Rattus norvegicus 81 Utf1 ENSRNOG00000050207 ENSRNOT00000075049 3 1 1 219 1 212281640 212281658 CCCTTCGATGACCAGATCC 60 212281937 212281956 TGGAAGAGCTGAATCTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349,ENSRNOT00000081104 1 2 2 81 7 134475291 134480539 TCTTGCCATTGATACTGAAAGG 59 134475231 134475249 ATGTCATCAACAGGTCGCA 60 NA Rattus norvegicus 81 Drap1 ENSRNOG00000020527 ENSRNOT00000038138 1 1 1 80 1 220805140 220805158 GAAGAATGGAGGCACAGGA 59 220804938 220805096 TCCTCAGACTCATCCTCCT 59 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 1 1 1 88 X 93065315 93065459 AAACCTATGGCACTGTCAG 58 93065245 93065263 GAGTACTGAGTGCGTTCCT 59 NA DesignNoJunction Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 1 3 4 81 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820458 37820476 CAGCATTGATGGCTTCCTG 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000076284 3 1 4 81 13 76055844 76166867 TTCGTGCTGGAGATCTCAG 59 76166911 76166930 GCAAAGTACCATTCTCCAGC 59 NA Rattus norvegicus 81 Cnih3 ENSRNOG00000022724 ENSRNOT00000036705 3 1 1 80 13 99663166 99663185 CTGCTTTCTGCTACATGCTG 60 99663227 99714683 CATCGAAGGCGATTATGTGC 60 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 2 2 2 80 7 104524114 104524135 AAATACCACAGACTGCTTAAGC 59 104523025 104524078 GTAAATCTGCTTCTATATTCCGGC 60 NA Rattus norvegicus 81 Sytl2 ENSRNOG00000030776 ENSRNOT00000045048 1 1 1 80 1 154579984 154582793 CATTTCTTCAAGATGAGAGCGA 59 154582831 154582852 TCTTCTTGTATCTCCTGAGCTG 59 NA Rattus norvegicus 81 Pnmal2 ENSRNOG00000016863 ENSRNOT00000022610 3 1 1 60 1 78877451 78877471 GGAGGTAGAAACAGAAGTGGA 59 78877492 78877511 TTCATCATCGTCATCATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5g ENSRNOG00000026578 ENSRNOT00000031244 3 1 1 83 6 26628267 26628864 AAAGCCTACAGGAAACTGG 57 26628202 26628223 GATGTCTTTGAAGAATTCTGCC 58 NA Rattus norvegicus 81 Slamf6 ENSRNOG00000038286 ENSRNOT00000029315 1 1 1 80 13 90314151 90314172 GTCATACACTGCACAGATAACC 59 90314211 90316210 CTTAGTCGTTCAAAGACCCTC 59 NA Rattus norvegicus 81 Fam154a ENSRNOG00000048197 ENSRNOT00000071318 2 1 1 84 5 104830292 104847682 CTGACCACATCCAGGAGAG 59 104830226 104830244 CTTGACTCGGAACGTATGC 59 NA Rattus norvegicus 81 Med31 ENSRNOG00000014618 ENSRNOT00000019919 3 1 1 81 10 58781345 58782961 GCCAAATATCTAAAGTACCCTCAG 59 58781287 58781305 CATTCACCAGCTCCTTTCG 59 NA Rattus norvegicus 81 Rabl3 ENSRNOG00000026085 ENSRNOT00000031741 2 1 1 81 11 66050929 66051495 GTTTAGAGAAGGTAATCAGATTCCG 60 66050872 66050892 GTCACAGTGGAAGTTCTTCAG 59 NA Rattus norvegicus 81 Armcx2 ENSRNOG00000025705 ENSRNOT00000029511 3 1 1 80 X 105620943 105621475 GAATTCGGGTTCTTAGGCTG 59 105620882 105620901 TCCTCTAATTCAGCCAGAGC 59 NA InUTR Rattus norvegicus 81 Tmem98 ENSRNOG00000021316 ENSRNOT00000037072 3 1 1 80 10 68175681 68176349 CTATGATTCCAAGCCTATTGTGG 59 68176387 68176407 ACATCATCCAGCTCTAACTCG 60 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622,ENSRNOT00000012308 2 2 2 80 8 69079557 69079576 TTCTGTCTTGGTTGGTTTGC 59 69079618 69084114 GCTCTTTGTTCCAATGTGGT 59 NA Rattus norvegicus 81 Ppapdc2 ENSRNOG00000015268 ENSRNOT00000020475 2 1 1 60 1 247084682 247084700 TGGAGATCTCAGGACATGG 58 247084723 247084742 CTCCTAAGCAGGCAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC097890.1 ENSRNOG00000015772 ENSRNOT00000021149 2 1 1 88 18 51219731 51219752 TTGAACATACCATACTGTGCG 59 51219802 51219820 CGTTGAGTTGGCTTTGGAC 60 NA Rattus norvegicus 81 Ica1l ENSRNOG00000017258 ENSRNOT00000041546 2 1 1 80 9 66806716 66808435 CTCTCAAGCAACTACAAGACAC 59 66806657 66806677 TACTAAGACAACTGCCCTCTG 59 NA Rattus norvegicus 81 Atp8b2 ENSRNOG00000020822 ENSRNOT00000028246 2 1 1 80 2 189291233 189291251 ACAAGAACTTTGCGTTCAC 57 189290377 189291189 ACTGGTCATAAACGGTCTG 57 NA Rattus norvegicus 81 Fam181b ENSRNOG00000010763 ENSRNOT00000014284 2 1 1 61 1 157921132 157921150 CAAGTCCAAGCGGAAAGTG 60 157921175 157921193 CACTGCAACGTTTGATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 1 2 2 80 8 114927964 114929251 TCTTCCTAGAGAAGCTGCTG 59 114927903 114927922 AGAAGTTGCATTCAGCTGAC 59 NA Rattus norvegicus 81 AABR07028012.1 ENSRNOG00000053439 ENSRNOT00000081052 2 1 1 62 17 52939824 52939842 GTCAGCCCATCATTGTGAC 59 52939983 52940002 CTGTTTCTGAAGCGCTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Tnfsf11 ENSRNOG00000049547 ENSRNOT00000049056 1 1 1 80 15 60504162 60504181 GAAGACACAGAAGCACTACC 58 60488549 60504121 GTGTTGTAATTCCCTTTGCAC 58 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000076953,ENSRNOT00000037446 3 2 2 80 4 7166554 7166573 ACATACCGTGTAGTTCAGCT 59 7166614 7166892 GTAGAATCCACAGTGCTTCTG 59 NA Rattus norvegicus 81 Lcn5 ENSRNOG00000058597 ENSRNOT00000061855 3 1 1 82 3 2877779 2879300 ACCTACTACAGTGAGGACCA 59 2879345 2879363 CTGGTGACCTGAAACTTCG 59 NA Rattus norvegicus 81 Scnn1g ENSRNOG00000017842 ENSRNOT00000024057 3 1 1 80 1 191708063 191708082 CTCCATCAAAGTCCACTTCC 58 191708124 191710013 ACAGCACTGTACTTGTAAGG 58 NA Rattus norvegicus 81 Rn60_X_0641.5 ENSRNOG00000051055 ENSRNOT00000076163 3 1 1 60 X 63431752 63431773 TCATTAAGAAGGAAGGTTTGGG 58 63431792 63431812 TCCAGAGTTGCTGTAAATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam186b ENSRNOG00000054250 ENSRNOT00000082521 1 1 1 80 7 140950889 140950907 TTGGTGACTCCCACTTCAG 59 140949967 140950846 CGAGATATCCTCCTGAGTCC 59 NA Rattus norvegicus 81 Mettl5 ENSRNOG00000008469 ENSRNOT00000011303 3 1 1 81 3 56102333 56104159 GAGATTATCGCAGAGCTTCG 59 56101799 56101817 GGTCCACTTCAATGTCCAC 59 NA Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 1 2 2 80 1 84367073 84369903 AGTGACTATGGCCACTTCTG 60 84369946 84369964 ACAGCATAATTGACGGCAG 59 NA Rattus norvegicus 81 Fam98a ENSRNOG00000030328 ENSRNOT00000052131 1 1 1 80 6 21063720 21064009 GTCTGACAGAGCTAAGAGTC 57 21064051 21064070 TTACCTTTGGGAGACAAGAC 57 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000085906,ENSRNOT00000084458 3 3 8 60 13 68717668 68717688 CCATAAGCAGATAAGTGGCAG 59 68717710 68717728 TTGCACTGAAGCATTTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805,ENSRNOT00000079607 2 2 2 80 17 56978626 56978646 TGCTAACTACAATCAAGGCTG 59 56974717 56978585 CATAGATGTCTGAGAAGCGG 58 NA Rattus norvegicus 81 Gata4 ENSRNOG00000010708 ENSRNOT00000014320 1 1 1 91 15 46388296 46389260 TGTCCCAGACATTCAGTACTG 60 46388225 46388243 AGATGGATAGCCTTGTGGG 59 NA Rattus norvegicus 81 Adcy8 ENSRNOG00000004890 ENSRNOT00000006789 3 1 1 80 7 105456564 105456583 AGTTTGATGTCTGGTCTTGG 58 105453123 105456523 TGGAAATGTGAATTCTCCCAG 58 NA Rattus norvegicus 81 MGC116202 ENSRNOG00000015625 ENSRNOT00000020927 2 1 1 80 19 37240468 37240487 GGAACCAATGCCAATGAGTG 60 37240325 37240426 TTAATGATGCCAACTGCCTG 59 NA Rattus norvegicus 81 LOC100911988 ENSRNOG00000045903 ENSRNOT00000045739 2 1 1 60 8 18062776 18062800 CTCATCATTATCTTGGCTGTAATCC 60 18062740 18062764 GAAAGAAGTACATTGGAGTATGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500846 ENSRNOG00000031425 ENSRNOT00000049063 2 1 1 80 7 69074078 69074099 CAATGATATCCACTCCATAGCA 58 69070640 69074038 AGTTCTGCAGTATTGATCCG 58 NA Rattus norvegicus 81 LOC100909613 ENSRNOG00000050749 ENSRNOT00000048907 2 1 1 60 3 103463746 103463765 AAATGAAGAGGGCAATGAGG 58 103463785 103463806 CAAGAGATTTGTCTATAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumf1 ENSRNOG00000006813 ENSRNOT00000009008 1 1 1 80 4 140140474 140152425 CCTACATGTGCCATAAGTCCT 60 140140414 140140432 TGGATGCAGAGCTATCTGG 59 NA Rattus norvegicus 81 Edf1 ENSRNOG00000016272 ENSRNOT00000022196 2 1 1 89 3 2781307 2783467 CTAAGCAGGCCATCTTAGC 58 2783839 2783857 TGGAATGCTGCTTGTTCTG 59 NA Rattus norvegicus 81 RGD1563562 ENSRNOG00000042222 ENSRNOT00000058288 2 1 1 80 2 132275156 132276362 CCTATGAGGGCATTATAGATTCAG 59 132275099 132275123 GTAGATTTAGATAAGGTACTGGTGG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286,ENSRNOT00000066137 2 2 2 87 10 105757218 105771725 GGAGGCAGGATGAAGACTC 60 105752622 105752642 TACTTAAAGGAGAAGGCTGCT 59 NA Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 2 2 2 81 1 219363601 219364104 AGATGCTGAAGGTGGAGAG 59 219363538 219363557 GGTACTGCCTTTGCTTTCTC 59 NA Rattus norvegicus 81 Rn60_2_0457.1 ENSRNOG00000018068 ENSRNOT00000024327 2 1 1 84 2 26471257 26471275 GAGAAGATCACGCATACCG 58 26471385 26471404 CATTCACCTCTTTCTGACGA 58 NA DesignNoJunction Rattus norvegicus 81 Olr1145 ENSRNOG00000050124 ENSRNOT00000051572 1 1 1 60 8 19386183 19386202 CTTCCTCTCAAACCTGTCCT 59 19386142 19386161 CATCTTTGGAACAGTGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpys ENSRNOG00000004298 ENSRNOT00000006004 1 1 1 80 7 78779613 78779631 GGGAAGTTTATTCCGCGAC 59 78771842 78779569 TATAGGTGTGCAGGTCTGG 59 NA Rattus norvegicus 81 Ell ENSRNOG00000019824 ENSRNOT00000026846 3 1 1 80 16 20596136 20596269 GACTACTTGCTGAAATACCCA 58 20596076 20596096 GCTGTATTCAGCATTGAAGTC 58 NA Rattus norvegicus 81 Ralyl ENSRNOG00000011400 ENSRNOT00000015195 2 1 1 82 2 89223403 89223422 CAAAGCCTGGAAGTAAGAGG 58 89127474 89190923 ATCAAACAGCCCAACAGAC 58 NA Rattus norvegicus 81 Olr1166 ENSRNOG00000046909 ENSRNOT00000048326 1 1 1 60 8 20266579 20266599 AAATCCCTTCCTCAAGTAGCA 59 20266621 20266639 ACGGACAGATGAGAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160,ENSRNOT00000020204 2 4 7 80 17 57060106 57060124 GGACACCACCTAACATTGC 59 57060166 57067502 GGGCTATAGCAATGTATTGCC 59 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 1 2 2 65 5 90339039 90348626 ATACCTCGAAATGCTGGTG 58 90348655 90348673 TGATCTTGCAACCATGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hoxb2 ENSRNOG00000008365 ENSRNOT00000011213 1 1 1 82 10 84201257 84202016 ATCACCATCAGATGGTCCC 59 84202062 84202080 GTTGCGTGTTGGTATAGGC 59 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 2 1 1 84 16 2004613 2036292 CATTAAGGATTGCCCTCAGG 58 2004548 2004566 CTTGTACTCGCCAAAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pla2g4e ENSRNOG00000024904 ENSRNOT00000030502 1 1 1 80 3 111957384 111957778 GCATGACATCGAAGATGATCC 59 111957324 111957343 GGGATCACTACTGTGGTCTC 59 NA Rattus norvegicus 81 Lce1f ENSRNOG00000023892 ENSRNOT00000056485 3 1 1 170 2 192991062 192991080 TTCTTCCTGCTGTAGCCTG 59 192990910 192990929 CTACAGCATCCAGAACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl4 ENSRNOG00000009378 ENSRNOT00000013461 1 1 1 80 8 69126226 69126246 GGATCATGTTGAAGCTGAACC 60 69126285 69126517 GAAGTTTGTGATTCCTAGCCTG 59 NA Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 1 1 1 93 10 84032661 84033606 GAAAGCAGCATTTGCAGAG 58 84033663 84033681 CTTGCTATAGGGAATGCGT 57 NA DesignNoJunction Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754,ENSRNOT00000080846 1 2 2 80 20 18833534 18901227 GGCCAAATCCAAGAAAGATCC 60 18901267 18901287 GCCATGATCATTTCTTTGGCT 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000,ENSRNOT00000009073,ENSRNOT00000008760 1 3 3 80 3 92708087 92708107 CACTCAAGTGGGAATCAAGAC 59 92706048 92708047 GATAAGCCACTCTGGAATCTG 58 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000,ENSRNOT00000009073,ENSRNOT00000008760 2 3 3 80 3 92708082 92708100 GTGGGAATCAAGACAGTGG 58 92706041 92708040 CCAAGATGATAAGCCACTCTG 59 NA Rattus norvegicus 81 Pik3cg ENSRNOG00000009385 ENSRNOT00000012487 3 1 1 80 6 51492908 51493040 CGTGGCTTGAGAAACAAGAG 60 51492847 51492866 CTGATAGTGTCTGGACTGGG 59 NA Rattus norvegicus 81 Aqp2 ENSRNOG00000054378 ENSRNOT00000091717 3 1 1 81 7 141240977 141241353 CTCCTTGGGATCTATTTCACC 58 141241396 141241414 CATCAAACTTGCCAGTGAC 57 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050,ENSRNOT00000090654 1 2 2 80 14 35080467 35080485 GGACCTGGAAGATTTGCTG 59 35079381 35080426 CTGTGAATACAGTTCTTGGAGG 59 NA Rattus norvegicus 81 C5ar2 ENSRNOG00000049028 ENSRNOT00000071576 2 1 1 80 1 78167964 78180115 TCGGAAGAGAAGGTGTCTG 59 78167902 78167925 CTGTTCCTGATCATACTCATACTC 58 NA InUTR Rattus norvegicus 81 RGD1564129 ENSRNOG00000042120 ENSRNOT00000058966 3 1 1 88 17 56936557 56937029 CGAACAAATAAAGAGCGTTCTC 58 56937078 56937096 TGGACAGGTTTCCTGTCTG 59 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759,ENSRNOT00000089615 1 2 2 80 10 65475734 65475912 GGACCGAAAGAAATTAGAGGA 58 65475674 65475693 CAGGCACAGATGAAGTAAGG 58 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759,ENSRNOT00000089615 2 2 2 80 10 65475733 65475912 GGACCGAAAGAAATTAGAGGAG 59 65475674 65475693 CAGGCACAGATGAAGTAAGG 58 NA Rattus norvegicus 81 Rn60_19_0706.2 ENSRNOG00000051278 ENSRNOT00000073582 1 1 1 60 19 59913588 59913608 CCAATGGAAGCTGTTTATCAC 58 59913629 59913648 TGAAAGTCACAGCCAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsm6 ENSRNOG00000049370 ENSRNOT00000071471 2 1 1 89 19 32781418 32781438 TAGCATTGGAACAGACAGAGG 60 32781488 32783512 TGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 Fign ENSRNOG00000004679 ENSRNOT00000006175 1 1 1 108 3 49995426 50119289 GTGTTTATGGCTTGAAGATGC 58 49995338 49995356 TAGGCTTCAACTTTGTGGG 58 NA Rattus norvegicus 81 Mdfi ENSRNOG00000014987 ENSRNOT00000020432 2 1 1 179 9 15179094 15179112 GACCACCTCTCAGAACCAG 59 15179254 15183653 GACACAGCAATCTTCCTGAG 59 NA Rattus norvegicus 81 Brca2 ENSRNOG00000001111 ENSRNOT00000001475 3 1 1 80 12 542299 542936 TGCTATTGAGAACATCGACAC 59 542978 542996 CACTTTGGACTGTCTCCCT 59 NA Rattus norvegicus 81 Kif5b ENSRNOG00000017466 ENSRNOT00000023861 1 1 1 80 17 54207961 54207979 TAAGGGTGGAGCATGAGAG 59 54208023 54209243 TGTCTTGCATAACCGTGAG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078094 2 1 11 81 6 99041450 99042093 TTCAGAAAGGAAGCTGAACAG 59 99042135 99042154 CTTCACGGAGCTTTCTTCTG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 1 3 3 80 7 141065930 141065949 ATGATCTTCACCTGCTTCAG 58 141065991 141066206 TGACATCAAGATACCTCCCA 58 NA Rattus norvegicus 81 Rn60_X_0656.1 ENSRNOG00000051036 ENSRNOT00000076678 2 1 1 60 X 64676433 64676453 GTCAATGTTGAACCTTTCTGG 58 64676393 64676411 CAATGTTGACATTGGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075993,ENSRNOT00000075879 1 4 6 109 15 36972745 36972763 GAACTATACCTGGCCCACC 60 36970624 36972672 CCTATCATTGTGCACTGCG 59 NA Rattus norvegicus 81 Map1s ENSRNOG00000018781 ENSRNOT00000025385 1 1 1 80 16 20274374 20275224 CAGCATAGTGAAAGGGCAG 59 20274312 20274330 TTGTCTGAGGGATTCAGCA 59 NA Rattus norvegicus 81 Pitpnm1 ENSRNOG00000018553 ENSRNOT00000025084 1 1 1 80 1 219352111 219353464 GTTCATCCATGATGTAGGTCTG 59 219353505 219353523 TCAATCCACTCATCCTGCC 60 NA Rattus norvegicus 81 Tas2r145 ENSRNOG00000037036 ENSRNOT00000055734 1 1 1 60 4 167018123 167018141 AAATAGCCCACTTCTCCCA 58 167018165 167018183 AGCACTCCTCTCAATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 1 1 1 74 7 116633699 116633831 AACTGACACAGGTGTCCTG 60 116633869 116633887 TCCACTGTCTTCACGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 2 3 3 80 5 117606774 117606795 GAACAGGAGTTTGTTTACAAGG 58 117605608 117606734 TTCTCCATAGAATCCCTCCA 57 NA Rattus norvegicus 81 Kcna5 ENSRNOG00000019719 ENSRNOT00000026691 2 1 1 60 4 159077455 159077475 ACTTCTATCATCGGGAGACAG 59 159077415 159077434 TTGCCTTGTTCTTCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564313 ENSRNOG00000054473 ENSRNOT00000074310 1 1 1 60 2 194434672 194434693 AAAGTCATTTGTGAGGATTCCC 59 194434711 194434732 GAGTTGGTACAGCATTCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reep4 ENSRNOG00000011373 ENSRNOT00000015169 2 1 1 80 15 52237342 52237511 GCTACCAAGAGTCAAGGTG 58 52237555 52237573 AGAGGTGTCAGGGATAGAG 57 NA Rattus norvegicus 81 Gpr180 ENSRNOG00000009766 ENSRNOT00000078103 1 1 1 81 15 103358008 103358027 TCTTAAAGGTCCTCACCACC 59 103358070 103358217 CTGGAGTACCTGGAGAAGTG 59 NA Rattus norvegicus 81 Unc13a ENSRNOG00000018452 ENSRNOT00000025162 3 1 1 80 16 20082169 20082601 CGACCTGGCTATGTCTCTG 60 20082107 20082127 TCTTCATTGTTCAACGTGCTG 60 NA Rattus norvegicus 81 Krt80 ENSRNOG00000025994 ENSRNOT00000029697 3 1 1 80 7 143004523 143004543 AACTGGAAACCAAACTCAAGG 59 142998277 143004482 TAAGGTCTTTCAGCTCCTGC 60 NA Rattus norvegicus 81 Rn60_6_1087.2 ENSRNOG00000052719 ENSRNOT00000090480 1 1 1 60 6 99249921 99249942 TGACCTGGACATCAAATATGAC 58 99249961 99249981 CACCACATAGAAAGTCAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgea5 ENSRNOG00000017822 ENSRNOT00000065172 1 1 1 80 1 265514906 265515404 CCTTATTGGAGACAAGTTAGTAGGA 60 265514850 265514872 ATACCATCTTCATCTTCGAGGAC 60 NA Rattus norvegicus 81 Nr1i2 ENSRNOG00000002906 ENSRNOT00000003934 2 1 1 80 11 65053974 65055398 TATCCCACTTCAGGGAGCT 60 65055442 65055460 ACCTCAGGATGCACATCTC 59 NA Rattus norvegicus 81 Armt1 ENSRNOG00000019489 ENSRNOT00000026367 2 1 1 84 1 40989693 41001412 ATGCAGAGTCCACCAATCC 60 41001460 41001478 CATTGATGGAGTCCTGCGA 60 NA Rattus norvegicus 81 AABR07040127.1 ENSRNOG00000053601 ENSRNOT00000080243 3 1 1 83 X 93530344 93530364 ACTGGACTAAGTGGACATTCC 60 93530406 93530430 ATGCTGTTCTTCAACTTCAACC 60 NA Rattus norvegicus 81 Lrrc8e ENSRNOG00000028460 ENSRNOT00000035142 3 1 1 106 12 2563474 2563492 TTCAAGGTGCTCAAACCCT 60 2560045 2563405 ATCTTGTCCTGTGTCACCTG 60 NA Rattus norvegicus 81 Rn60_4_0539.1 ENSRNOG00000053425 ENSRNOT00000089519 2 1 1 60 4 54121223 54121241 CAACAAAGGTGTGAAGGGC 60 54121265 54121283 GTAGTTAGCAAGGAGGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081029,ENSRNOT00000081594 3 3 3 80 8 107525338 107525356 ATGACAGCCAGTCAGAAGG 59 107525399 107525507 TCTGTAACGACGTCAGAAGG 60 NA Rattus norvegicus 81 Srl ENSRNOG00000005269 ENSRNOT00000048687 3 1 1 80 10 11240224 11265904 GACAAGCAGAACTGCAAGTC 60 11265944 11265965 CTCCAGCAGAGAAATGATTCTC 59 NA Rattus norvegicus 81 LOC681198 ENSRNOG00000040020 ENSRNOT00000061522 2 1 1 90 15 5667221 5667239 CCACAAGATGCAGAAGGAG 58 5539923 5667169 AGACTCAAAGTTGTTCCTGTC 58 NA Rattus norvegicus 81 AABR07049880.1 ENSRNOG00000049397 ENSRNOT00000010885 1 1 1 80 5 142323120 142323139 TCCCATCCATACATTGTGCT 59 142323182 142325106 GTCATCAAGGTCAGCTCGT 60 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396,ENSRNOT00000081290 1 2 2 80 17 52410886 52410905 ATTGATGCCAGACATCACGA 60 52386124 52410843 AGATAAGGCAGAAGGCACG 60 NA Rattus norvegicus 81 Mex3b ENSRNOG00000025142 ENSRNOT00000039748 1 1 1 114 1 144832038 144832056 GAAGAGCGTGAACATGACC 59 144832969 144832987 GTAAGTGTTGGTCTTCGCC 59 NA DesignNoJunction Rattus norvegicus 81 Rfx1 ENSRNOG00000006049 ENSRNOT00000008104 1 1 1 80 19 25210888 25210908 ATGTACTACCTGATCGAGCAC 60 25210950 25211048 CAGGTTTGCAAACTCTCCC 59 NA Rattus norvegicus 81 Trap1a ENSRNOG00000037610 ENSRNOT00000057044 1 1 1 80 X 110512348 110512367 ATCAGAAGATGAGATGGGCA 59 110512406 110516799 CCTGGAGAATATGAATAGGTACC 58 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792,ENSRNOT00000091135,ENSRNOT00000029340 2 3 3 80 2 177868628 177868648 CTTTGTGGACAGTGTTGACTC 60 177868468 177868592 CCATTCACTTCTAATATCTGATCCC 59 NA Rattus norvegicus 81 Olr124 ENSRNOG00000016018 ENSRNOT00000021429 3 1 1 60 1 168853083 168853103 ATCCATCATGCCTATTGTGAG 58 168853043 168853062 CCTGAGTGTTACCACTAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912287 ENSRNOG00000050484 ENSRNOT00000073844 3 1 1 60 4 1702901 1702919 CCTCATCACTGCATTGGGA 60 1702859 1702878 AAGGTGAGAATTCAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh1 ENSRNOG00000015020 ENSRNOT00000020322 1 1 1 80 9 71899962 71899980 AATGACACGGATCATCTGG 57 71895969 71899920 AAGTCATAGCTATGCAGATCC 58 NA Rattus norvegicus 81 RGD1564162 ENSRNOG00000028386 ENSRNOT00000032257 1 1 1 80 20 13662877 13663261 CTGTGATGTTTGGAGCTGG 59 13663304 13663323 TCCGTTTCAGATGCATAGTG 58 NA Rattus norvegicus 81 RGD1564162 ENSRNOG00000028386 ENSRNOT00000032257 3 1 1 81 20 13662877 13663261 CTGTGATGTTTGGAGCTGG 59 13663304 13663324 TTCCGTTTCAGATGCATAGTG 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897,ENSRNOT00000039954 1 2 2 80 10 65768933 65769132 CTACTTGTTCAAGGGTAGTCAG 58 65769173 65769191 CCTTCAGAGATGTTTCGGG 58 NA Rattus norvegicus 81 Rag2 ENSRNOG00000004623 ENSRNOT00000006097 3 1 1 74 3 91195185 91195206 CAGGAAGTAGACTTCATACCTC 58 91196807 91196825 TGTAACCATCTGCAGGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Psma2 ENSRNOG00000049920 ENSRNOT00000073834 1 1 1 80 17 53099587 53100230 GGGAATTAAAGCTGCAAATGG 59 53099527 53099549 TGTACACTCCTCTCATCATACAG 59 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000051989,ENSRNOT00000073865,ENSRNOT00000063883 3 3 3 80 11 71030727 71034127 ATAGTGCCTTGTTAGTGTCCC 60 71030667 71030687 GTGTGAAGGCAGAAGAATGAG 59 NA Rattus norvegicus 81 Hoxb6 ENSRNOG00000007823 ENSRNOT00000010527 2 1 1 90 10 84148239 84149347 ATTCGTGCAACAGTTCCTC 59 84149401 84149419 AATTCCTTCTCCAGCTCCA 58 NA Rattus norvegicus 81 RGD1561317 ENSRNOG00000031034 ENSRNOT00000045604 3 1 1 60 3 122817241 122817260 AACTTACATGCCTGTTACCA 57 122817280 122817301 TTAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meaf6 ENSRNOG00000009309 ENSRNOT00000067204 2 1 1 90 5 143096380 143096398 TCAGAAAGCTGCCTCTTCC 60 143096451 143101576 CTTCAGATCAATCCTGTGCC 59 NA Rattus norvegicus 81 Diaph1 ENSRNOG00000019688 ENSRNOT00000060432 3 1 1 80 18 30985065 30985216 TTTGTAAGCTTCGAGACACC 58 30985004 30985024 GGTCAGTCTCACATAACTCAG 58 NA Rattus norvegicus 81 Kdelr3 ENSRNOG00000013577 ENSRNOT00000087888 2 1 1 80 7 120757344 120757362 GGTTGGAGTTCCTTGTGGT 60 120757404 120758107 TCCAGAGAATCTCCATTGGTG 60 NA Rattus norvegicus 81 Anp32e ENSRNOG00000021168 ENSRNOT00000028744 3 1 1 80 2 198047342 198047361 CTTGGACGGATTTGATCAGG 59 198047403 198048079 TCATCCTCATCTCCATCCTC 58 NA Rattus norvegicus 81 Tpo ENSRNOG00000004646 ENSRNOT00000006526 2 1 1 80 6 49062704 49074173 GTGCAACAACAGAGATCACC 60 49062643 49062662 CCATCTTCGTAGACAGGAGG 59 NA Rattus norvegicus 81 RGD1560175 ENSRNOG00000027756 ENSRNOT00000046208 1 1 1 84 11 61474184 61474203 AGATGACAGAGCATGAGACG 60 61450467 61473221 TTTCTGTGCCTCTCCACTG 60 NA Rattus norvegicus 81 LOC100911403 ENSRNOG00000045611 ENSRNOT00000074966 2 1 1 80 1 227225926 227227719 AAGGTTTGGTTCGAAGCAG 59 227227760 227227781 TCAGTGAGTTGATTATCATCCC 58 NA Rattus norvegicus 81 LOC688739 ENSRNOG00000027656 ENSRNOT00000065766 2 1 1 81 11 65610770 65610788 TGATGTAATGGCCATGGTG 58 65610833 65611102 AGGAAATGAGCTTGGTGAC 58 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000045978 ENSRNOT00000074526 2 1 1 60 4 170145219 170145237 AAGGTCTGGGTAAAGGTGG 59 170145177 170145195 CCCTGGATGTTATCTCGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfdn2 ENSRNOG00000003983 ENSRNOT00000005346 3 1 1 86 13 89725941 89740895 CGGAACAGGTAATTGCTGG 59 89740945 89740963 TCAGTTCCATCTCCAGCTC 59 NA Rattus norvegicus 81 Nol10 ENSRNOG00000005344 ENSRNOT00000007169 2 1 1 80 6 42720475 42721835 GAGTCCAGTTAAAGAAACTTCC 57 42721875 42721894 ATTTCTGCTTCTCCTCTTCC 57 NA Rattus norvegicus 81 Uqcc2 ENSRNOG00000025909 ENSRNOT00000036871 3 1 1 82 20 5714737 5715388 AACTACTACAAGCACAAGTACC 58 5714676 5714695 GACAGGATCAGCTTGTACTC 58 NA Rattus norvegicus 81 Olr984 ENSRNOG00000051632 ENSRNOT00000078290 2 1 1 60 7 4713934 4713953 AACTGCCATGTCCTATGACC 60 4713975 4713994 GATGGTTGTGTAGTGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabarapl2 ENSRNOG00000019425 ENSRNOT00000048998 1 1 1 80 19 44166782 44166800 AGGATCCAGCTTCCTTCTG 59 44166843 44174525 CTGTCCCATAGTTAGGCTGG 60 NA Rattus norvegicus 81 Olr779 ENSRNOG00000050125 ENSRNOT00000046310 1 1 1 60 3 103128046 103128070 CATGTACTTTCTATTGGCTAACCTC 60 103128010 103128031 GGAAGTAACAGAAGAAACACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ino80 ENSRNOG00000014483 ENSRNOT00000031672 3 1 1 80 3 111260754 111263344 GTAAAGATAAGGAGTTGCAGCAG 60 111260696 111260715 GCTGTTGCTCATAGAAAGGG 59 NA Rattus norvegicus 81 Slco4a1 ENSRNOG00000053430 ENSRNOT00000080656 1 1 1 80 3 175856776 175857224 GGACTCACTTTCAAGGTATTAGG 59 175857264 175857282 GTCTGAGGACACTGAAGGG 59 NA Rattus norvegicus 81 Mon1b ENSRNOG00000011552 ENSRNOT00000065508 1 1 1 117 19 45942972 45942990 CTGTCCGACCTGTATCACC 60 45943071 45945147 CAAACTTGGAGGTGACCCA 60 NA Rattus norvegicus 81 Anapc16 ENSRNOG00000000576 ENSRNOT00000000702 1 1 1 80 20 29545491 29547501 GAAACATGATCAGCAAGTCG 58 29545430 29545448 TTAAACCGCCACTCATCAG 58 NA Rattus norvegicus 81 Sdr42e1 ENSRNOG00000051819 ENSRNOT00000079760 2 1 1 80 19 50211239 50220389 GTCATCTGCCTCTGTCCAG 60 50211177 50211196 GGTAATGAGGACGGTTTCCT 60 NA InUTR Rattus norvegicus 81 Ankrd29 ENSRNOG00000011856 ENSRNOT00000067690 3 1 1 80 14 109547698 109551945 CCAACTTTATGATGGAGCCAC 59 109551987 109552005 GAAGACAGCAGAAGTCGGA 60 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000018148 ENSRNOT00000024427 2 1 1 82 15 5863391 5863409 GAGATGGGACCACATGACC 60 5862973 5863345 ACCCATCAAGTTCCAGAGG 59 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 2 2 2 140 4 85560618 85560636 TGAGATCATTGGCACCCTG 60 85560740 85561014 CCAGTGTAGTCAATGGCCA 60 NA Rattus norvegicus 81 Olr399 ENSRNOG00000030855 ENSRNOT00000046196 2 1 1 60 3 16039342 16039361 ATGTACCTGACAACTGTGCT 59 16039384 16039402 GAGAGTCCAGCCTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855,ENSRNOT00000091493 1 2 2 80 3 123622082 123622456 ATGCTAAGGCTACTGTCGT 59 123622020 123622039 TCACGTTACAAGTTAGGCTG 58 NA Rattus norvegicus 81 Olr943 ENSRNOG00000050255 ENSRNOT00000047855 3 1 1 97 7 7833043 7833064 CAAAGCATGAGGCATTTGG 58 7833125 7833143 AATGGTGCTGATGATGCAG 59 NA Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 2 2 2 80 1 80955066 80955957 GGCTCTCAGGAAGAAGGAG 59 80956001 80956019 GTTCCTCAGGACAAAGGGA 59 NA Rattus norvegicus 81 Tpsb2 ENSRNOG00000018611 ENSRNOT00000025220 1 1 1 89 10 14723662 14723821 ATAGTGACGAGCCTCTCCT 60 14723873 14723892 TGTGGTACTTCCGATCACAC 60 NA Rattus norvegicus 81 Car6 ENSRNOG00000021355 ENSRNOT00000051309 1 1 1 80 5 167237426 167237445 GAGAAGTACGAGACCTACGA 58 167233642 167237385 ATCCTCAACCTTAACCAAGAC 58 NA Rattus norvegicus 81 Lgals5 ENSRNOG00000012557 ENSRNOT00000016897 2 1 1 80 10 66226554 66228676 CCAGAGATTCTCAGTGTGG 57 66226492 66226513 CGGTATTCACAAATATGCTGAC 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718,ENSRNOT00000029723 1 2 2 122 13 96304073 96335197 GAGTACAGAGGCAATAGTGG 58 96379674 96379692 AATCGAATGTACCCAGTGG 57 NA Rattus norvegicus 81 Apcs ENSRNOG00000009086 ENSRNOT00000012092 2 1 1 99 13 91427423 91427441 CTGCTGTCATACCCTGGAC 60 91427232 91427361 GATTGAGGTCTGTCTGAGCA 60 NA Rattus norvegicus 81 RGD1561277 ENSRNOG00000023431 ENSRNOT00000061005 1 1 1 113 10 45201911 45201929 TGTCTGTGGACTTCACCTG 59 45202004 45205504 CACATTGATTCAAGGACAGCA 59 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048400 ENSRNOT00000072216 3 1 1 60 2 234298883 234298901 CGTTATGCACCTCTCACCA 60 234298924 234298943 GCTGGCACACTTGTATACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 1 2 2 80 19 52080996 52081864 GTTATCATTGGCAATGGTCCC 60 52081905 52081924 AGCTCCTGGTTTCACATAGG 60 NA Rattus norvegicus 81 Npepps ENSRNOG00000023095 ENSRNOT00000031045 2 1 1 80 10 85172849 85176486 CTTGTTACTATGGAATGGTGGA 58 85172790 85172810 GTGGTCTACACAAAGGTACTC 58 NA Rattus norvegicus 81 AABR07051564.1 ENSRNOG00000061576 ENSRNOT00000073316 3 1 1 60 3 17139842 17139860 CTTCCAGGTTCAGTGGGAG 60 17139883 17139902 TCCACAGGATCTATGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020860.1 ENSRNOG00000048922 ENSRNOT00000005532 2 1 1 80 13 43839099 43839118 CTCTGCTGCAGTAGTAATGG 58 43839158 43841778 GATGAAGATATGGCTTCCTCTG 59 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195,ENSRNOT00000088917 2 2 3 80 6 106106124 106106143 CTTGAGAACGTCAGTCACAG 59 106106186 106110815 GTTTCTGAGCAACTCCTCC 58 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000010626,ENSRNOT00000088917 1 2 3 100 6 106068370 106068388 CTGTGAGCATTCGAAGGGA 60 106068451 106072529 TCTCAGTGTCATGAGCTCAC 60 NA Rattus norvegicus 81 Npvf ENSRNOG00000010806 ENSRNOT00000014437 1 1 1 81 4 80393423 80393442 CAGTGAATTGCTCTATGCCA 58 80391866 80393379 GAACACCCGTTTCCTAGGT 59 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 2 2 2 80 13 75118023 75118728 CACTGACCAGAAGACCCTG 60 75118769 75118790 GTGCCATAAGATACTGGTAGGA 59 NA Rattus norvegicus 81 Nedd1 ENSRNOG00000004011 ENSRNOT00000005463 2 1 1 80 7 33554320 33554339 ACTTCTCCAGCTTTGATGAC 58 33551908 33554279 TGTTGACTACAGCATCATCTC 58 NA Rattus norvegicus 81 Sh3yl1 ENSRNOG00000005522 ENSRNOT00000068208 3 1 1 99 6 49860400 49860419 AGTCAGAAGCAAAGAAGGCT 60 49860481 49863329 TTTGCAATCACATGGGCAG 59 NA Rattus norvegicus 81 Fkbp8 ENSRNOG00000058359 ENSRNOT00000077756 3 1 1 87 16 20646787 20647063 CCAACAAGACGATCCATGC 59 20646718 20646736 ATCTTTCGGTACAGGGCAG 60 NA Rattus norvegicus 81 Ndn ENSRNOG00000010146 ENSRNOT00000013468 1 1 1 60 1 122982602 122982620 GAGTACGAGTTCTTCTGGG 57 122982644 122982662 CCATGATCTGCATCTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndn ENSRNOG00000010146 ENSRNOT00000013468 2 1 1 60 1 122982146 122982164 CTCATGTGGTACGTGTTGG 59 122982188 122982206 CCATGTCTGGAAACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ropn1 ENSRNOG00000002187 ENSRNOT00000002975 2 1 1 84 11 69328869 69328887 ATATCGCTGAAGTGGATGG 57 69326969 69328822 TCAGGACCAATTACTTCCTG 57 NA Rattus norvegicus 81 Tmem160 ENSRNOG00000015304 ENSRNOT00000020609 1 1 1 81 1 78419095 78419113 ATGGACTTCTGGCATCAGG 60 78419158 78420100 AGGAAGAAGCCATAGGCAG 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 3 2 2 80 19 52180330 52180901 GATACACAGGTGCTAATGTCAG 59 52180271 52180292 CCTTCACATTCTTGAAATGTGG 58 NA Rattus norvegicus 81 Fus ENSRNOG00000023360 ENSRNOT00000031891 3 1 1 80 1 199416932 199417104 CACCTCAGGAAGTTATGGTG 58 199417147 199417165 CCAGACTGTTGACCATAGC 58 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 2 4 4 80 1 262914458 262914476 AAGTACACATACCCTGCCC 59 262914518 262914661 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 3 2 2 80 10 65451252 65451346 AAGAAGGATCTGAGTACTCCT 57 65451387 65451406 CTCAGCCTTAATCTCTTGGG 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644,ENSRNOT00000083956 1 2 3 80 7 143322676 143323068 CCAGACCAAGTACGAGGAG 59 143322614 143322633 TCTGAGATCTCATGCTTGGT 59 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000080010 1 1 3 60 7 143316999 143317017 TGAACCTGCAAATCGATCC 58 143316957 143316975 TTGATCTGCTCCCTCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fxyd1 ENSRNOG00000021079 ENSRNOT00000028624 2 1 1 80 1 89485983 89486428 CACCTACGATTACCACACC 58 89485921 89485939 AGGATGATAAGGATGCCCA 58 NA Rattus norvegicus 81 LOC100359989 ENSRNOG00000049038 ENSRNOT00000065658 2 1 1 80 3 3236954 3237568 TTCGTACCTGAACAGGTGAC 60 3237610 3237629 ATCTCCTTCCTCAACGACAG 59 NA Rattus norvegicus 81 RGD1311595 ENSRNOG00000026942 ENSRNOT00000039428 2 1 1 80 1 247922860 247931336 CGGAGTTTCAGCTTATTTGCA 60 247922800 247922822 CCAGATCTTTGAGTTCATTCTCG 60 NA Rattus norvegicus 81 Pah ENSRNOG00000004302 ENSRNOT00000005844 3 1 1 80 7 28099198 28099216 CATTCAGGAGTTGGACCGA 59 28099260 28108676 TCTTTAAAGCCTGGGTGGT 59 NA Rattus norvegicus 81 Tmem52 ENSRNOG00000016618 ENSRNOT00000022286 1 1 1 86 5 172888661 172888802 CTGTGACCTCCTACAGCTC 59 172888852 172888870 GTACCATGGAGTCAGGGTC 59 NA Rattus norvegicus 81 Kif24 ENSRNOG00000012735 ENSRNOT00000035541 1 1 1 81 5 57797317 57797335 AGATAGCAAGCATGTGGTG 58 57792827 57797274 TAAGATCACCTGTAGGAGGAG 58 NA Rattus norvegicus 81 Ints7 ENSRNOG00000004263 ENSRNOT00000005715 2 1 1 80 13 110302075 110302809 GAACGTAGAACTCCAGCAG 58 110302853 110302871 CTTGCTGATTCAGGATCCA 57 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000003689 1 2 5 80 13 78758180 78758201 TATGAGGAAGCCAAGAAATGTG 59 78758242 78759592 ATTCAAGCCCACTCCTCTC 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899,ENSRNOT00000073798 3 2 2 81 1 99455771 99455789 AATATGGTGTTGGTGGGAG 57 99455834 99460087 ATGTATAAGCCGCGATCAG 58 NA Rattus norvegicus 81 Fbxo5 ENSRNOG00000024077 ENSRNOT00000029416 1 1 1 80 1 42462421 42462441 AAATGTTCAACCCAGTCAACG 60 42462040 42462379 AATGTCTTTGCCACCTCCA 60 NA Rattus norvegicus 81 Olr777 ENSRNOG00000050428 ENSRNOT00000045645 3 1 1 60 3 103090352 103090371 CAGTCGTGTCTGAATTTGTG 58 103090311 103090330 AGGAAGAGTTGAATCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc50 ENSRNOG00000001930 ENSRNOT00000002649 1 1 1 80 11 76783626 76783644 TGCTCAGGAAATCCAGGAG 59 76771398 76783582 CGTGCTATGTCCTCATCCT 59 NA Rattus norvegicus 81 Gnai1 ENSRNOG00000057096 ENSRNOT00000091004 3 1 1 80 4 13479436 13480986 TGAAGAAATGAACCGGATGC 59 13481028 13481047 ATGGATGTGTCCGTAAACCA 60 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 3 1 1 67 2 156792558 156807073 TAAGTTCAGCTCCCAGAGG 58 156792509 156792528 TAAGTCTCCCTGGGTAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 3 2 2 80 17 5449796 5449816 TCTGGGAATCTTGAAGATCTG 57 5441872 5449755 GACTGGAAATCTTCCTCCTC 57 NA Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 3 2 2 81 3 95313044 95397388 CTACCTGCTGAGGTACTGTG 60 95397432 95397450 TTTGCACTGATTGGTCACC 59 NA Rattus norvegicus 81 Otud6a ENSRNOG00000042687 ENSRNOT00000029298 3 1 1 60 X 70256801 70256821 TACAAGCTCATATCCAGACCC 59 70256843 70256861 TTTCGTCTTCCCTTGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 2 2 2 81 1 266113999 266114018 TACGTGGACACCTTTGTCTC 60 266114056 266114524 TATTCCAGAGGAGAAATACAGTCTC 60 NA Rattus norvegicus 81 Samd10 ENSRNOG00000036719 ENSRNOT00000029386 2 1 1 198 3 177093757 177093775 CTACCTCGTCTACGTCGAG 59 177092901 177093076 GTTTCCGAAGGAAGCTTGG 59 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498,ENSRNOT00000002645 2 2 2 80 11 77486703 77490124 ATGAGAAGGAACCAGGAGAG 59 77486642 77486662 AGATCTCATTGTGAGAGTCCA 58 NA Rattus norvegicus 81 Vrtn ENSRNOG00000048378 ENSRNOT00000073962 2 1 1 195 6 108365107 108365126 TAGCCTGTTACCTTCTACCT 57 108365320 108365338 CCATTCAACAGGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032,ENSRNOT00000082205 1 2 2 80 8 49697679 49697807 TCCTTTCTATTATGACTACCAGACC 60 49697841 49697863 AGAAGTATCCCAACAGAGAAGAG 59 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032,ENSRNOT00000082205 3 2 2 80 8 49697685 49697812 CTATTATGACTACCAGACCCTGAG 60 49697848 49697869 AGGATGAGAAGTATCCCAACAG 59 NA Rattus norvegicus 81 U2af1l4 ENSRNOG00000024497 ENSRNOT00000038154 2 1 1 80 1 89017576 89017727 AAGGACAAGGTTAACTGCTC 58 89017770 89017788 TTTGTTGTGAAGTCGGGAG 58 NA Rattus norvegicus 81 Trem2 ENSRNOG00000013578 ENSRNOT00000018351 3 1 1 83 9 14615345 14615363 CTCTACCAGTGTCAGAGCC 59 14612742 14615298 ATCTAGAGGGTCCTCCAGC 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000020587 1 1 4 80 1 189312525 189312721 CTTTCCAGTTACAAGTTCCCA 58 189312763 189312781 CCAACTCTCCAGAGTCTCC 59 NA Rattus norvegicus 81 Tor1a ENSRNOG00000006894 ENSRNOT00000064660 1 1 1 80 3 9803650 9806497 CATCACCCTGTATAAGGACCA 59 9803590 9803610 TCAAAGATGAAGATGGACCGA 59 NA Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 2 2 2 80 17 10107680 10107700 TGGAGAAGACTCTGTAGATGG 58 10107741 10112286 TCCCTATTATCAACCTGCCT 58 NA Rattus norvegicus 81 Krba1 ENSRNOG00000007405 ENSRNOT00000043856 1 1 1 80 4 78042672 78042691 ATACCTGTTCTGCCGAAGAC 60 78042732 78043489 TCTTCTCTTCTGCTCTTCCTG 59 NA Rattus norvegicus 81 Trim32 ENSRNOG00000010303 ENSRNOT00000013675 1 1 1 118 5 81431656 81439362 GCAGGAATTTGACACTGGG 59 81439444 81439462 ATCCAGGTTCAGGTGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Efcc1 ENSRNOG00000009787 ENSRNOT00000013274 1 1 1 80 4 119652610 119652628 GGTGAACCTACGGCTAGAG 59 119652671 119653992 CTGTTCTTCCTTGGTGTCTG 59 NA Rattus norvegicus 81 Erich4 ENSRNOG00000037798 ENSRNOT00000031326 1 1 1 102 1 82409462 82409480 GGCCCTTATGTCTTCAGGG 60 82408574 82408592 CAACAGCTGAACATCCACG 60 NA DesignNoJunction Rattus norvegicus 81 Dazap2 ENSRNOG00000004628 ENSRNOT00000006239 1 1 1 80 7 142239192 142240359 ACAGCAAAGGTCAATATCCA 57 142240397 142240420 GATGTAAGGTCTGAGGATATACTG 58 NA Rattus norvegicus 81 RGD1560289 ENSRNOG00000022155 ENSRNOT00000029055 1 1 1 80 4 123804615 123804636 ACTATTATTGAGTTGCCTGACC 58 123804677 123805601 CCTTTCGGCTTCTATGTGG 58 NA Rattus norvegicus 81 Rab11fip4 ENSRNOG00000014135 ENSRNOT00000018986 1 1 1 80 10 67038409 67038427 TGCTGCAAGAAGATCAACC 59 67038471 67038728 GATCTTCCTGTTGGGACTG 58 NA Rattus norvegicus 81 Ptrhd1 ENSRNOG00000004059 ENSRNOT00000005402 1 1 1 75 6 28663811 28663829 ACACAGCAGCTTATCTCCG 60 28666338 28666356 TTCAAGGTGGTCTCATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Ern2 ENSRNOG00000018974 ENSRNOT00000025699 2 1 1 80 1 192133158 192133796 TCCTTTGAGTTCCTAAACCTG 58 192133098 192133118 TGGATAAGTGTCAGCTTTCTC 58 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 1 1 2 130 4 84660384 84660403 CCAGGTCAGAAGATTTACCC 58 84670002 84673945 AGTGCCTTTAGAGATAACTGAG 57 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000012755 3 1 2 203 4 84659269 84659287 AAGCTAAACCCACCTCCAG 59 84670002 84673946 GAGTGCCTTTAGAGATAACTGAG 59 NA DesignRelaxed Rattus norvegicus 81 Rpl19 ENSRNOG00000004741 ENSRNOT00000006359 1 1 1 80 10 85980988 85981314 TGACCGTCATATGTATCACAG 57 85981356 85981374 ATGTGCTCCATGAGAATCC 57 NA Rattus norvegicus 81 RGD1309594 ENSRNOG00000001215 ENSRNOT00000049745 1 1 1 80 20 11419254 11419686 CTACACAGAGGAGACAGAAGTC 60 11419195 11419215 TTCTTCATAGTGTCCCTTGGT 59 NA Rattus norvegicus 81 Fam89b ENSRNOG00000024239 ENSRNOT00000016987 1 1 1 82 1 221086668 221087051 CAAGGAAATGGTGGGTCTG 59 221086604 221086622 TGTAGTCCTGGATCGACTC 58 NA Rattus norvegicus 81 Aco1 ENSRNOG00000005849 ENSRNOT00000008337 2 1 1 80 5 56461885 56461903 TATCTTCAGGCTGTAGGCA 58 56461946 56462791 ATCTAACTCCACGACCTGAG 59 NA Rattus norvegicus 81 Cbfb ENSRNOG00000014647 ENSRNOT00000019656 3 1 1 80 19 37150867 37150885 GCTGGATTGATCTCCACAG 58 37150928 37156787 CTAATGCATCTTCCTGCTGG 59 NA Rattus norvegicus 81 Xkr6 ENSRNOG00000011634 ENSRNOT00000015540 2 1 1 85 15 46946357 47143229 GGTGTGGAGGTATATCCGC 60 47143278 47143296 TCATAGCCCAGTAGAAGCG 59 NA Rattus norvegicus 81 Ctxn2 ENSRNOG00000037146 ENSRNOT00000056054 2 1 1 60 3 117416520 117416541 TCTTGGGACTTCTCATTATCAG 57 117416561 117416580 GGCATGCTACTATATGGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd37 ENSRNOG00000020699 ENSRNOT00000066834 3 1 1 81 1 101233923 101234023 TCTTCTGGGCCTGTATTTCG 60 101233861 101233879 TCGCTGAGTGGAAATGAGG 60 NA Rattus norvegicus 81 Calcb ENSRNOG00000011074 ENSRNOT00000014764 3 1 1 82 1 184272776 184273036 CCTTTCAGGTCAGCTTTGG 59 184273081 184273100 ATCAATGCAGCAAGCAAGAG 60 NA Rattus norvegicus 81 Pon2 ENSRNOG00000009112 ENSRNOT00000036460 2 1 1 82 4 30347047 30347065 CGTTGCTGACATATTGGCT 59 30346255 30347003 ACTGCAGAACCTTTAGTTGAG 58 NA Rattus norvegicus 81 Soga3 ENSRNOG00000012324 ENSRNOT00000016712 2 1 1 86 1 31118439 31120322 GGATCTCAAGGTTGCAAAGG 59 31118372 31118390 TCGTCTTCTGTTGTGGTCC 60 NA Rattus norvegicus 81 Olr268 ENSRNOG00000053711 ENSRNOT00000087448 1 1 1 60 1 172753197 172753215 TCTACCTGATGCCCAAGTC 59 172753239 172753257 TAGAACACAGACACCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651,ENSRNOT00000071939 3 2 2 88 20 9335117 9335331 TACAACTACGACCTGGTCTC 59 9335380 9335400 TTATAATACCTCGACACGCTG 58 NA Rattus norvegicus 81 Hhex ENSRNOG00000016595 ENSRNOT00000022384 3 1 1 89 1 256104470 256104488 CAAGATGTTGCAGCTCAGC 60 256104731 256106595 TGAGGATTCTCCTGCTTCAG 59 NA Rattus norvegicus 81 S100a7a ENSRNOG00000033352 ENSRNOT00000051365 3 1 1 106 2 190058190 190059273 AGCAACAGACTCTCCACTG 59 190059343 190059361 AGGGAGTCCTCTACTGGTG 60 NA InUTR Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 2 2 2 80 10 10797361 10797379 CCACTGTCTTCCTTGACCT 59 10797061 10797318 AGCTATGTTCAGAGCTCTCC 59 NA Rattus norvegicus 81 AABR07060591.1 ENSRNOG00000059195 ENSRNOT00000078254 1 1 1 88 4 82665205 82668742 TTTAACAGGATACAGGGCCT 59 82668791 82668811 CCTCTGAGTGTTCTTAATGCA 58 NA Rattus norvegicus 81 Isca2 ENSRNOG00000012085 ENSRNOT00000016089 2 1 1 80 6 108488979 108488997 AACAACGTCCTCCATTCCA 59 108489040 108489174 GTGATTTCCAGAAGCCTCTG 59 NA Rattus norvegicus 81 Dpp7 ENSRNOG00000012640 ENSRNOT00000017271 1 1 1 80 3 2572887 2572906 CAACTCTGGCTTCATAGTGG 58 2572744 2572847 GATTTCCCATAATACCGATGCT 59 NA Rattus norvegicus 81 Dpp7 ENSRNOG00000012640 ENSRNOT00000017271 2 1 1 80 3 2571714 2571922 TCACAGCGGACTTCTATGG 59 2571652 2571673 GGAACAAGTCTTTGATTTGCTG 59 NA Rattus norvegicus 81 AABR07053533.1 ENSRNOG00000049007 ENSRNOT00000071591 2 1 1 80 3 112607874 112607892 GCCATTGAACTTCAGCCAG 60 112607230 112607832 CCAGCTCAAATGAGAAACCTG 60 NA Rattus norvegicus 81 Ostn ENSRNOG00000030462 ENSRNOT00000049841 3 1 1 82 11 76874488 76874506 AGAAGCTTCTCTGGCTTCG 60 76855971 76874445 ACTACTCTCCTTTGTTTCCCTC 60 NA Rattus norvegicus 81 Phldb3 ENSRNOG00000055259 ENSRNOT00000083493 3 1 1 82 1 81482577 81482717 AGGCTCTTACTCAGGAAAGG 59 81482762 81482780 GTCAGGCTCAGAGAAGTCC 60 NA Rattus norvegicus 81 Drosha ENSRNOG00000013451 ENSRNOT00000048026 1 1 1 80 2 62995106 62995124 CCCACGCTAGAACCTACAC 60 62995167 62995916 CCTGCTGAATACTTGGTCCT 60 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038,ENSRNOT00000006492 2 3 3 80 6 108870262 108870282 TGATAGGCCATCCTATGACAG 59 108870322 108871658 TAAGTTCTTCGTTCTCCTCCA 59 NA Rattus norvegicus 81 RGD1308878 ENSRNOG00000026782 ENSRNOT00000030001 3 1 1 96 5 162509272 162509291 GATCTTTCATCCCAAGGCAG 59 162509350 162511597 GTGGTAACTGTCCAAGCTG 59 NA Rattus norvegicus 81 Frem3 ENSRNOG00000039152 ENSRNOT00000059896 2 1 1 80 19 31024650 31024670 TACATCCTGAACAAGGACCAC 60 31010816 31024608 TAACTGGCTTCCTCCACTG 59 NA Rattus norvegicus 81 Pou6f1 ENSRNOG00000004595 ENSRNOT00000006095 1 1 1 109 7 142205679 142205698 TTTAAGATCCGGAGGCTCTC 59 142204898 142205607 TTCTCGAACCTGCAGATGG 60 NA Rattus norvegicus 81 Taar5 ENSRNOG00000039869 ENSRNOT00000061209 3 1 1 60 1 22548305 22548323 GCCTTACCTCCATCTTCCA 59 22548263 22548281 TCACAGATGGCACAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030375.2 ENSRNOG00000049667 ENSRNOT00000072972 2 1 1 154 10 83104673 83104987 CGAACCTCAAATGCTCTGC 60 83109618 83109636 AACCACAGCTCGATCTCAG 60 NA Rattus norvegicus 81 Tuba1b ENSRNOG00000053468 ENSRNOT00000081355 1 1 1 80 7 140616383 140616401 CTTCAGTGAGACAGGAGCT 59 140616190 140616342 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Dars2 ENSRNOG00000002813 ENSRNOT00000003828 2 1 1 80 13 78858057 78859801 ATTGCCTTAGGGTTAGACAG 57 78857996 78858016 GGATTTAGGGAAGGCTATGAC 58 NA Rattus norvegicus 81 Xab2 ENSRNOG00000000988 ENSRNOT00000001309 2 1 1 80 12 2161644 2161663 AACCGTGTATACAAGTCGCT 60 2161486 2161602 CTTGGTTGACTGGAAAGTGC 60 NA Rattus norvegicus 81 Otoa ENSRNOG00000017487 ENSRNOT00000023591 1 1 1 80 1 191047016 191050484 TAGTCCTATAGAAATCGGGCTG 59 191050523 191050543 TCTGGAGTGACATCATACACC 59 NA Rattus norvegicus 81 Akr1c3 ENSRNOG00000017531 ENSRNOT00000023739 1 1 1 80 17 69769112 69769133 TTTACCTCAAGATGAGCATGGA 60 69769173 69770169 TTACACTTCTCCATGGCCTC 60 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 2 2 2 80 7 143466246 143467082 ATCTATTTGATACGGAGCTGTC 58 143466187 143466206 AGCGGTTATTGTCCATTGAC 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 1 2 2 80 18 63366954 63370439 GGAACACAGAAAGGACCTC 58 63366892 63366910 TATGAAGCCAAAGCTGGTG 58 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 2 2 2 80 18 63388242 63388261 TGGAATGGAGATCTGTTCTG 57 63384949 63388199 TTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 LOC100911794 ENSRNOG00000020133 ENSRNOT00000027335 1 1 1 80 1 220429404 220429422 CTCTTTGGAGGGCTCAGAG 60 220429463 220429594 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 Fgd6 ENSRNOG00000054515 ENSRNOT00000077666 1 1 1 80 7 35056888 35058972 AGCTGCAGAAACTAGATCAC 58 35059013 35059033 AAGATAAGGCACTTGAAGGAG 58 NA Rattus norvegicus 81 G0s2 ENSRNOG00000006019 ENSRNOT00000007879 1 1 1 60 13 112004736 112004754 CTGATCCCTCTGGCTAAGG 59 112004694 112004712 ACAGCTTCACTAGCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl13 ENSRNOG00000014029 ENSRNOT00000018788 1 1 1 80 X 121589916 121589934 CTTCCACCTAAGTGCCCTC 60 121582709 121589875 CACTCGACAGTAGGTAGTTCTC 60 NA Rattus norvegicus 81 Sv2a ENSRNOG00000021182 ENSRNOT00000028760 1 1 1 80 2 198330860 198330878 ATGTCACATCCAGCAACAC 59 198330922 198333841 TGTACTCAAACAGGTCCGT 59 NA Rattus norvegicus 81 Mpv17l2 ENSRNOG00000019394 ENSRNOT00000026271 2 1 1 89 16 20434379 20434545 ACTTCTACAAGGCCGACTG 59 20434593 20434616 TGATATAGGTGACTCGGAAATGAG 60 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 2 2 2 80 15 58655665 58656848 TAGAGCAAGCTATGGATCTGG 59 58656889 58656908 TGATCTGCTCCTTCAGAACC 60 NA Rattus norvegicus 81 Rps6kl1 ENSRNOG00000005530 ENSRNOT00000007350 2 1 1 169 6 108966545 108973091 TCATCAAGAAGGTGCAGGT 59 108966050 108966068 GAAGATGGAGTCCTCGCTC 60 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203,ENSRNOT00000083171 3 2 2 80 3 57051580 57053248 CTCCCTCCTCATCTGTTCG 59 57051518 57051537 GCTTTGGTTGTACAACAGGG 60 NA Rattus norvegicus 81 Otud4 ENSRNOG00000018477 ENSRNOT00000024924 3 1 1 80 19 31941847 31941865 AAGCTGGGATTGTATCGGA 59 31938240 31941804 AGAGTGTAATACCTGCTCGG 59 NA Rattus norvegicus 81 Utp11l ENSRNOG00000007174 ENSRNOT00000009882 2 1 1 94 5 142669972 142669995 CGATAGGGTCTATAATAGACCCAG 59 142667652 142669919 CTTTGGCTATCCGCTTGAG 59 NA Rattus norvegicus 81 Hacd2 ENSRNOG00000038761 ENSRNOT00000003013 3 1 1 80 11 68900818 68925158 GTGTCAAAGAGGTGCAGAG 59 68900756 68900777 AGGAGTAACGGATAATTTCCGT 59 NA Rattus norvegicus 81 Tmed10 ENSRNOG00000007901 ENSRNOT00000010512 2 1 1 81 6 109183845 109204791 ACCCACCTCAAGATCACAG 59 109183782 109183801 TGGTAAAGGCAAACTTCCCT 60 NA Rattus norvegicus 81 Gla ENSRNOG00000011513 ENSRNOT00000015494 1 1 1 80 X 105412728 105417133 CCTGCATAAGTGAGCAACTG 59 105412667 105412685 GGTATTCATAACCCGCGTC 59 NA Rattus norvegicus 81 Prox2 ENSRNOG00000005054 ENSRNOT00000006704 2 1 1 83 6 108912346 108912364 AGTCCTCCGAGACTCAGAG 60 108911874 108912300 AAGAAGCATTCTGGGACCTC 60 NA Rattus norvegicus 81 Psapl1 ENSRNOG00000006845 ENSRNOT00000009193 2 1 1 60 14 79713950 79713970 TTTGGCATCGGTAATGAAGAC 59 79713910 79713928 GCACTTAGCTGAAGACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tor1b ENSRNOG00000006435 ENSRNOT00000066618 3 1 1 94 3 9795962 9796427 TCATCTTCCTCAGCAATGCA 60 9796484 9796502 CTTCAGCTGGATCTCCTCC 59 NA Rattus norvegicus 81 LOC100912408 ENSRNOG00000047813 ENSRNOT00000075693 1 1 1 60 1 173128164 173128184 GAATCCACTAATCTACAGCCT 57 173128124 173128143 CCATAATTTCAACACAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb8os ENSRNOG00000008226 ENSRNOT00000074628 2 1 1 80 5 147536071 147536091 GGCGATCAAGAACAAGTATCC 59 147540340 147541333 CATGCATGTAACTGGACATCAG 60 NA Rattus norvegicus 81 Smyd2 ENSRNOG00000003583 ENSRNOT00000004783 3 1 1 80 13 108666248 108666267 ATCAGTTCTACTCCAAGCAC 57 108666310 108674628 AGCCATTACAGTTCACCTG 58 NA Rattus norvegicus 81 Gip ENSRNOG00000006306 ENSRNOT00000008481 3 1 1 88 10 83841123 83844070 AGAGGTTGAGTTCCGATCC 59 83844119 83844140 TGTAATCACTGATGAAAGTCCC 58 NA Rattus norvegicus 81 LOC100360750 ENSRNOG00000030374 ENSRNOT00000050289 3 1 1 89 13 47380685 47380703 GCATTGGAACAGACAGAGG 59 47380753 47382672 TATGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000046844 ENSRNOT00000070936 2 1 1 60 4 170079864 170079883 ATCCAAAGTTACGAGAAGCA 57 170079823 170079843 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgme1 ENSRNOG00000028196 ENSRNOT00000038865 1 1 1 60 3 138405233 138405253 GAACCATGATGCCAACTACAG 59 138405619 138405642 CTTATAGGCCACCACAATTAATCC 60 NA DesignNoJunction Rattus norvegicus 81 Emx1 ENSRNOG00000015493 ENSRNOT00000020786 1 1 1 84 4 116973988 116974006 AATCACTACGTGGTGGGTG 60 116983574 116983592 TCTGGAACCACACCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000059386,ENSRNOT00000077748 3 2 2 82 8 50597403 50597421 ACCTGGGATCTTCCAAGAC 59 50596394 50597357 GATCTTCAAATGGCGCCAG 60 NA Rattus norvegicus 81 LOC100363333 ENSRNOG00000032647 ENSRNOT00000041124 1 1 1 80 14 15950443 15950461 CAATTGCCTCCAGCATCTC 59 15950505 15951288 GTCATCAGGGACCCTAGGA 60 NA Rattus norvegicus 81 AABR07061048.1 ENSRNOG00000049501 ENSRNOT00000073076 1 1 1 60 4 103145011 103145029 CCTGCTTATCAGCATTGGA 58 103144969 103144987 TACCAGGCTCTGACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 3 2 2 80 3 111831491 111831511 CTTCTACTGGTCCTCTGAACC 60 111831553 111831728 GAGACCTGCTCTTTGTCCA 59 NA Rattus norvegicus 81 Ptgdrl ENSRNOG00000031535 ENSRNOT00000042545 1 1 1 81 15 18089301 18095151 TCCCTGCCTTTAATTTATCGTG 59 18089241 18089259 CTTGGAGGTCTTCCGAGTC 60 NA Rattus norvegicus 81 Npc2 ENSRNOG00000012062 ENSRNOT00000016076 1 1 1 80 6 108472025 108479447 CTTTACTAGCGGCACTCAG 58 108471963 108471982 ATAGGGAAGTAGACTGGGAC 58 NA Rattus norvegicus 81 Fbxo3 ENSRNOG00000009549 ENSRNOT00000014478 3 1 1 80 3 93968968 93971377 GGGACCTAATCAATTGTTGCT 59 93971419 93971437 TGCAATGTCTTCTCCACAG 58 NA Rattus norvegicus 81 RGD1561034 ENSRNOG00000030818 ENSRNOT00000040672 2 1 1 80 1 170213073 170214999 AGGATAAGGTCATCGAGGAG 58 170215041 170215060 GTAGATCATAGTAGGCTGCG 58 NA Rattus norvegicus 81 Slc50a1 ENSRNOG00000020554 ENSRNOT00000027878 2 1 1 99 2 188586874 188587000 CACGGATGTCAACAACCTG 59 188586793 188586812 TAGAGTCTGAAGCACTGCAC 60 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000030243 ENSRNOT00000044209 2 1 1 80 3 26025773 26049601 AAGTGACATCCTGTGAATTTCC 59 26025714 26025735 ATTTGTTGCTGATACATCTCCC 59 NA Rattus norvegicus 81 Bhlhe40 ENSRNOG00000007152 ENSRNOT00000009563 1 1 1 80 4 140704632 140705557 CAAACTTACTACTTTGGGTCAC 57 140705597 140705616 AGGTTTGTCAATGCTTTCAC 57 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197 2 1 2 106 12 2201969 2202149 TCTGCCACGTACTTAACAGG 60 2202218 2202236 ATCCATGGGACACAGTGAC 59 NA InUTR Rattus norvegicus 81 Klf7 ENSRNOG00000046242 ENSRNOT00000072007 1 1 1 87 9 70787338 70787356 CTGTCAGTTTAACGGGTGC 59 70749449 70787288 TGTAAGGCTTCTCACCTGTG 60 NA InUTR Rattus norvegicus 81 LOC103690317 ENSRNOG00000060185 ENSRNOT00000086886 1 1 1 80 7 140207174 140207192 AAGCCTTACTACACAGGCA 59 140204551 140207130 AACGAGTGGTATGAGCCTG 60 NA Rattus norvegicus 81 Lrfn2 ENSRNOG00000011803 ENSRNOT00000015705 2 1 1 92 9 13847045 13875743 TACTGATTTACAGGATGATCCCAG 60 13846976 13846994 TAGCCAGTACGCACAAGTC 60 NA Rattus norvegicus 81 Ttc27 ENSRNOG00000042932 ENSRNOT00000006505 3 1 1 80 6 21815431 21815451 ATTTGAGAAGCTGGAGATGTG 58 21797127 21815390 AGAATTTCTTCTGCCTTCCC 58 NA Rattus norvegicus 81 Casz1 ENSRNOG00000013474 ENSRNOT00000018000 3 1 1 80 5 165759096 165759114 GATTGCAGCGTCTACTACC 58 165759158 165760179 CTTGTTACATCCCACCTGC 59 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076431,ENSRNOT00000035113 1 2 4 80 13 79031214 79032057 GCCAAGACATTAGGCTTGTG 60 79032098 79032118 AATCTCCTGTATGTGTTCGGT 59 NA Rattus norvegicus 81 Btg1 ENSRNOG00000004284 ENSRNOT00000005910 1 1 1 97 7 37812892 37812910 TCATCTCCAAGTTCCTCCG 59 37812971 37813785 TTTGTAATGCTCTGCCAGC 59 NA Rattus norvegicus 81 Zc3h4 ENSRNOG00000015229 ENSRNOT00000020509 3 1 1 80 1 78374270 78374964 GAGGAGATAGAGTATGGCGA 58 78375006 78375025 GTACTGGTTTAGCTCCTTGG 58 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 1 2 2 80 14 16378596 16378618 GACAGATGTTTGTCATGAGAGTG 60 16377749 16378559 GGTCAAACTTCTCATGAAGCTC 60 NA Rattus norvegicus 81 Kbtbd6 ENSRNOG00000047604 ENSRNOT00000071455 3 1 1 60 15 61731932 61731952 CCCAGAGGAATTAAAGGACAC 58 61731974 61731992 GAAAGACTTGAGCTGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl13a ENSRNOG00000055454 ENSRNOT00000085068 2 1 1 80 X 105025711 105025732 GTATGAGCAACATCTCAAGCTC 60 105025770 105035140 CTCCTCTGGTAGATAAGCTGTC 60 NA Rattus norvegicus 81 Hdac1l ENSRNOG00000009568 ENSRNOT00000012854 1 1 1 80 5 147718089 147718411 CAAACGAATTTCCATCTGCTC 58 147718029 147718047 CCTTCTCCCTCCTCATCAG 59 NA Rattus norvegicus 81 LOC100912534 ENSRNOG00000001748 ENSRNOT00000002382 3 1 1 80 11 82859842 82859946 TTACCCTGTAGACTTAGGTGAC 59 82859783 82859802 TCACCATCATCCAAGGTACC 59 NA Rattus norvegicus 81 Olr772 ENSRNOG00000048092 ENSRNOT00000040364 3 1 1 60 3 102926267 102926287 GGTTCGACAAATTTCTTGCTG 59 102926308 102926327 ATGGCTGGATTTAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911839 ENSRNOG00000047136 ENSRNOT00000074866 3 1 1 60 1 171162327 171162347 CAGCAGATACTTACAGCACAG 59 171162287 171162307 GCTAGGAGAATTACAATGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984,ENSRNOT00000003801 1 2 2 80 10 43885363 43885381 CAACTCTCAAGTGGTGCTC 59 43884712 43885320 GTATGTTGTCGACACCTGTG 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 3 2 2 80 12 12885662 12885680 CGCTTCATCACCATGAACC 59 12884528 12885624 GATACTTTCATACAAGTTCCTCAGC 60 NA Rattus norvegicus 81 Dhdh ENSRNOG00000020883 ENSRNOT00000028334 2 1 1 80 1 101472118 101474807 CCTTATGGAGGCCATTTGG 58 101472056 101472075 TCTCCGATAGTTCCTTGGAC 59 NA Rattus norvegicus 81 Rn60_X_0681.1 ENSRNOG00000051048 ENSRNOT00000075949 3 1 1 60 X 67212135 67212153 ATGGAACAATCAAGGCTGG 58 67212093 67212112 AAGATGGTGATGGGTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Izumo3 ENSRNOG00000022488 ENSRNOT00000033781 3 1 1 80 5 110705542 110705760 TCTCTGAAGTTGCTTGTTCAG 59 110705105 110705123 TGGTCATTCGAAGACAGGT 59 NA Rattus norvegicus 81 Olr374 ENSRNOG00000030032 ENSRNOT00000049799 2 1 1 60 1 230576397 230576416 CTCTTCCTCCTCTTTGTCCT 59 230576437 230576457 AGATGATGGCTGTATTACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 2 2 2 80 X 105177413 105178401 CAGTGCTTCTTACAAGAGGGA 60 105178443 105178461 ACAAGAGAAGCCATCCCAG 59 NA Rattus norvegicus 81 Olr552 ENSRNOG00000045627 ENSRNOT00000046688 2 1 1 60 3 75235109 75235128 TGCAGTATATGCAACCACAG 58 75235068 75235087 CACATAGCGATCATAAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss32 ENSRNOG00000029223 ENSRNOT00000071525 3 1 1 81 10 13197684 13199131 CCACTGCTTTAACCAGGAC 59 13199175 13199194 CTCATTGTCCTCAGGGTAGG 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 3 2 2 80 2 232155841 232155862 AGAGGCATTATGACTCTATTGC 58 232154422 232155803 TCTCCTCTTGTAAGGCTAACTC 59 NA Rattus norvegicus 81 Olr1241 ENSRNOG00000050355 ENSRNOT00000074575 1 1 1 60 4 1535838 1535857 GCGATTTCTCTGTTCTTTGG 58 1535877 1535898 ATTCAGCAGAAGATGGTTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561738 ENSRNOG00000042995 ENSRNOT00000068548 3 1 1 60 13 73661208 73661226 ACAAGCAAAGAGGAGTACG 58 73661250 73661268 CACAACAGCTGAGTTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999,ENSRNOT00000076272,ENSRNOT00000087506 3 3 4 80 13 78492536 78502142 AATTAAAGAGGCAGTCAGCA 58 78492475 78492496 TTAACATCAGACACTTGTCTGG 58 NA Rattus norvegicus 81 Olr1579 ENSRNOG00000049212 ENSRNOT00000045429 2 1 1 60 13 91638592 91638610 TCCAATTTCCAAGAGCACC 58 91638550 91638574 TCAGGATGTATAGGGTAAAGAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562339 ENSRNOG00000001767 ENSRNOT00000002408 3 1 1 103 11 83048817 83093832 GGTGTCACTGCAAATATGTG 58 83093897 83093916 GATTTGAATGGTGTTGGTGG 58 NA Rattus norvegicus 81 Ttll6 ENSRNOG00000004939 ENSRNOT00000006594 1 1 1 80 10 83991706 83993421 CAGTTCCCAAGACACAATACC 59 83993463 83993481 CCATTCCTTTCTTCCTGCC 59 NA Rattus norvegicus 81 Angel2 ENSRNOG00000003795 ENSRNOT00000005084 2 1 1 80 13 109510286 109510306 CAGTGTTACACTGGAGTTTCC 59 109510346 109511709 CCTGTAGACAAAGCACATCAG 59 NA Rattus norvegicus 81 LOC100911674 ENSRNOG00000005408 ENSRNOT00000007490 1 1 1 92 10 45065461 45071528 CCTCAACGGATGTCATGAC 58 45065387 45065405 TAAGCATCTGGGACCTCTG 59 NA Rattus norvegicus 81 Sohlh1 ENSRNOG00000033983 ENSRNOT00000051729 2 1 1 102 3 3293192 3293210 AGAGCCAAGCTACTGAGAG 59 3292519 3293126 CTGGAGGACTCTGACTCAC 59 NA Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 3 2 2 80 4 157455005 157455318 TGATTGGGAACATGGAGCA 59 157455361 157455380 TGTTGGAGTAGGAGATGACC 59 NA Rattus norvegicus 81 Tmem37 ENSRNOG00000047714 ENSRNOT00000074471 1 1 1 289 13 36101318 36101336 TCGAGGAATCTGCATCCAG 59 36095445 36095463 CAAAGAAAGACCGGTGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364,ENSRNOT00000089042 3 2 2 80 2 189387560 189387578 CACTAAGAGTGGTGGACCT 58 189383992 189387517 CTACCAGAACTACCTCTGCC 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741,ENSRNOT00000067333 1 3 3 80 7 81991900 81991918 GGAGAGTGTCTGCATTCCT 59 81978548 81991859 TATTCTGCATCTTGCACATCTG 59 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 1 2 2 80 12 16918363 16918487 GGCAAACCTATCAGGTCCA 59 16918528 16918549 GAAGCGTAAGAAAGTGATGGAG 60 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000020602 ENSRNOT00000027980 2 1 1 113 16 21281176 21281194 ATAATGAGGTGGAACCGGG 59 21281930 21282035 AAGAATCTGCAGGGTCCTG 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599,ENSRNOT00000085031,ENSRNOT00000089972,ENSRNOT00000082402 2 4 4 81 6 109658531 109667438 TGGTCATCACCTATGGTCTG 59 109667482 109667500 GGAAAGTGCATGATCACCA 58 NA Rattus norvegicus 81 Rpl38 ENSRNOG00000033686 ENSRNOT00000050489 2 1 1 60 14 104453011 104453029 TAAAGTTCAAGGTCCGCTG 58 104453050 104453071 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spaca1 ENSRNOG00000008232 ENSRNOT00000010909 1 1 1 80 5 49429160 49430186 TAAAGCCAGATCAACAACCT 57 49429099 49429119 AAGCCATAGGATGAAGTTCTC 58 NA Rattus norvegicus 81 Parp3 ENSRNOG00000012865 ENSRNOT00000017224 3 1 1 80 8 115176190 115176360 CGAGTACAAGGCCATACAG 58 115176128 115176146 ACTTTCCAAACATGCTGCA 59 NA Rattus norvegicus 81 LOC100911225 ENSRNOG00000047000 ENSRNOT00000073302 3 1 1 89 1 141834379 141834397 CCAGTGACAAGGAGAAGGG 60 141834449 141835630 TCCTCAGGGCTTTCTTACAG 59 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159,ENSRNOT00000044278 1 2 2 80 6 27418075 27419832 AACCCAAGAAGTATGAGCTG 58 27419875 27419893 CTCCCGTGAAGAAATCGTC 58 NA Rattus norvegicus 81 Myrf ENSRNOG00000028274 ENSRNOT00000039133 3 1 1 80 1 226267976 226268260 GGCCAATAAGTCATCACCA 58 226267914 226267933 ACCAGAGCAATGATAGTTCC 57 NA Rattus norvegicus 81 Stab2 ENSRNOG00000038948 ENSRNOT00000059538 2 1 1 80 7 27422794 27424235 GAACCATCATTACAAGAGCCTG 60 27422735 27422753 ACACATTCTGACCTCTCCC 59 NA Rattus norvegicus 81 Vom1r38 ENSRNOG00000038644 ENSRNOT00000058997 2 1 1 60 1 72230379 72230400 CTATCAGTTTGTCATGCTTCTC 57 72230419 72230439 GGCTCTTCCTTTGAGTATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365828 ENSRNOG00000047434 ENSRNOT00000074913 1 1 1 60 2 178868525 178868546 AAAGACTGGTCATCCTAGCC 59 178868567 178868587 ATATCCACAGGAATCACTGTC 57 NA DesignNoJunction Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 2 2 2 80 7 97832016 97832034 CTCGAAGAACACGTGTTCC 59 97832078 97833154 ATTGTCCTCCATCACCCTC 59 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000004247 ENSRNOT00000064984 3 1 1 81 10 34976095 34978233 GCGAGAAAGGGATCATGGT 60 34978278 34978296 TGGTCCTCGCACATAACTG 60 NA Rattus norvegicus 81 Mir15b ENSRNOG00000035483 ENSRNOT00000053606 2 1 1 68 2 165605929 165605949 CCTTAAAGTACTGTAGCAGCA 58 165605978 165605997 GCAGCAAATAATGATTCGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022046.1 ENSRNOG00000023091 ENSRNOT00000031419 2 1 1 60 13 104156264 104156282 GCTTGAAGAGGAACCAGAG 58 104156222 104156242 ACCAACGTCCATGATTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r117 ENSRNOG00000033896 ENSRNOT00000040828 1 1 1 60 4 166987219 166987240 AGGAGACATGAAGATGAGACAG 59 166987260 166987279 TTTCCTGAATTTCTGCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a7 ENSRNOG00000036951 ENSRNOT00000055520 2 1 1 96 5 167201994 167202012 CAACCTCTTCACCTTTCGG 59 167202071 167203439 GTAGTTGACCGCATTGATCC 59 NA Rattus norvegicus 81 Rps2-ps1 ENSRNOG00000058852 ENSRNOT00000078525 1 1 1 60 20 3159510 3159530 CTTTGATGCCATCTTCAAGAC 58 3159470 3159488 TCAATGTTCCAGAGGTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292,ENSRNOT00000080109 3 2 2 80 7 141390327 141390438 GACTCCTTGCTAGAAGCTG 58 141390265 141390284 ACCAAAGATCACAAAGAGGG 58 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000038480,ENSRNOT00000089279 3 2 2 60 7 143596773 143596793 GTCGTGAAGAAGATTGAAACC 58 143596733 143596753 ACATGATGTCAGAAGACTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stoml3 ENSRNOG00000011006 ENSRNOT00000014765 1 1 1 80 2 142726523 142726624 GTGCTTGAAGATCATTAAGGAG 57 142726665 142726683 GGTCCCTTGGCTTTATCAG 58 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 1 2 2 82 10 67821227 67821245 TAAAGCAGCTCGTCTGGTC 60 67821291 67828242 AACATAGCTCGACCTCCTG 59 NA Rattus norvegicus 81 Uba1y ENSRNOG00000052326 ENSRNOT00000092178 1 1 1 80 Y 444899 445010 AGACTACTTTAAGACAGAGCAC 58 445048 445069 GGCATAAAGAAGGAATAGAGCA 58 NA Rattus norvegicus 81 Osr2 ENSRNOG00000011136 ENSRNOT00000014879 2 1 1 85 7 74052615 74053577 GGATCACAGGTATATCCATTCCA 60 74053620 74053640 CTGCTAGGGTTCTAGACTGAC 59 NA Rattus norvegicus 81 Synpo2l ENSRNOG00000008949 ENSRNOT00000011956 2 1 1 80 15 4064793 4066018 CCTTTACAGGTATCTAAGATCCGA 59 4066056 4066075 GATCGATAAGAGCTGGTCCC 60 NA Rattus norvegicus 81 LOC100912292 ENSRNOG00000043300 ENSRNOT00000066977 1 1 1 83 5 58018833 58019697 CTCAACTCAGGCTCAGGAC 60 58018768 58018786 ACTTTCCAAGGAGGCTGTC 60 NA InUTR Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 3 2 2 81 10 85944823 85945566 GAATGCTGAGTTTGTCATCCT 59 85944762 85944782 GATCTTATACAGCTCCTCCCG 60 NA Rattus norvegicus 81 Snx10 ENSRNOG00000011944 ENSRNOT00000016265 2 1 1 80 4 81364532 81364552 GCGTACGAAGAAGGTATAGAG 58 81364592 81364980 GTTCTGGTAATTGTACCAGCA 58 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 2 2 2 80 12 18161176 18161196 CTGAGCTGATCTTCAATTTGG 57 18161237 18163389 TTTGGAAATCTGGGATGCTC 58 NA Rattus norvegicus 81 Uhrf1bp1l ENSRNOG00000050317 ENSRNOT00000072733 3 1 1 80 7 30413763 30413783 ATGAGTACTTGTGAAGAGCCA 59 30413824 30417002 AAAGCCGTACTCACTCTGTC 60 NA Rattus norvegicus 81 Tmem185b ENSRNOG00000047257 ENSRNOT00000072632 2 1 1 60 13 35555608 35555626 CAGCTGGATCACGATTGTC 59 35555650 35555668 CAGTCTGTGAACTAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ice1 ENSRNOG00000023053 ENSRNOT00000061873 3 1 1 80 1 35313751 35313771 GGAAAGGACATTCAAACATCG 58 35313810 35316105 ATTGACCTAATCGACCAATCAG 58 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 3 2 2 85 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762103 70762121 TGGATGATCAGGGAGATGC 59 NA Rattus norvegicus 81 RGD1562652 ENSRNOG00000026051 ENSRNOT00000036147 1 1 1 82 20 3138866 3138885 TATTCAAGAGGCACACCCAG 60 3138928 3139112 AGTGTGGGAATCTTGACTCTG 60 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 1 1 1 94 3 9656851 9658963 GATCCAGTGGGTGATAGGC 60 9659021 9659039 TGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 2 2 2 80 12 19630138 19630159 TACTTCATAGCCCTTCTTCTCC 59 19630197 19630431 ATCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Eif2s3y ENSRNOG00000060048 ENSRNOT00000088593 3 1 1 80 Y 919130 919835 AAAGGAGTATTAAAGGTGGGC 58 919876 919895 ACACATAAGCTTCCCTTCAC 58 NA Rattus norvegicus 81 Lacc1 ENSRNOG00000022094 ENSRNOT00000032301 2 1 1 80 15 59214609 59215205 TGATCCCAGACATCTTCCT 57 59214547 59214566 GATTGAGTGAGCTGAGAGTG 58 NA Rattus norvegicus 81 Atp1a3 ENSRNOG00000020263 ENSRNOT00000027497 2 1 1 80 1 81874006 81876118 CCGGTGACAATCTGTACCT 59 81873944 81873963 TGGCTTCTTGGTAGTAGGAG 59 NA Rattus norvegicus 81 Dok2 ENSRNOG00000013922 ENSRNOT00000018725 1 1 1 83 15 52451368 52452359 GACCTTTGGCAAGAAGTGG 59 52452406 52452424 TCCTGGAGCTCTAGTCTGG 60 NA Rattus norvegicus 81 Ttll5 ENSRNOG00000009318 ENSRNOT00000012895 1 1 1 80 6 109744270 109745188 AAGGATACAACTGCATTGATGG 59 109745228 109745247 AGTGGCGATAGCTAGTTCAG 59 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 2 2 2 81 18 71525019 71575015 TGCTCCAGAAGGACTTCAC 59 71524956 71524974 CACAGGAAGGTGATGAAGC 59 NA Rattus norvegicus 81 Atp1b4 ENSRNOG00000007059 ENSRNOT00000009329 2 1 1 80 X 124640795 124640816 AACTTCAACGTTTCTGAACCTG 60 124640855 124645150 ACTGTCATTATAGCCCTGGAG 59 NA Rattus norvegicus 81 Lzts1 ENSRNOG00000011826 ENSRNOT00000015799 3 1 1 84 16 22295795 22297894 TGGAAATGAGTTCAGACAAGG 58 22297940 22297958 GAAGAGTGGAGAATGGCTC 58 NA Rattus norvegicus 81 Foxd2 ENSRNOG00000007759 ENSRNOT00000010201 3 1 1 60 5 133709668 133709686 GATCATGTCCTCCGAGAGC 60 133709626 133709644 CACGTCTATATCTGCGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim21 ENSRNOG00000018517 ENSRNOT00000024992 1 1 1 80 1 167698339 167699236 AAAGAACAGACTGGAAGAGGA 59 167698279 167698299 CCAGCAAGCTATTCTGATGTG 60 NA Rattus norvegicus 81 Derl3 ENSRNOG00000028243 ENSRNOT00000038623 3 1 1 82 20 13705834 13705852 CTGGAGGCTCATCACTACC 59 13705651 13705788 AGTAGCGGAACACGAAGAG 60 NA Rattus norvegicus 81 LOC102557415 ENSRNOG00000030626 ENSRNOT00000066317 3 1 1 159 1 215450569 215450587 TTCAGGATGTGGGTCTTCC 59 215450337 215450423 TTAGATCTTGCATTGCGAGC 59 NA Rattus norvegicus 81 Tmem238 ENSRNOG00000017306 ENSRNOT00000023246 1 1 1 65 1 72624906 72624924 GACCTGCTCATCTACTCCG 59 72624953 72624971 GTACCAGAGAATCCAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 2 2 2 80 10 105319451 105320990 AGACTTGTCAAATGTGCTGAG 59 105319391 105319409 GAACTCGACGTTGTAGTGG 58 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 2 3 3 69 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82261078 82261096 GTGACTCCCATACACAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 1 2 2 128 1 165886103 165886121 GAGCGATCTTCCTGAGTCC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Angptl7 ENSRNOG00000009589 ENSRNOT00000012726 2 1 1 80 5 165314198 165314219 GAAGAACTACCGAATCTCTGGA 59 165313628 165314160 TCACAGAACACCTCTAACTCAG 60 NA Rattus norvegicus 81 MGC112715 ENSRNOG00000000569 ENSRNOT00000057752 2 1 1 82 20 29914748 29914767 TGCTGGTCTATAAGCAGAGG 59 29918024 29918780 GATTCCTTGGGTGTTGCTG 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283,ENSRNOT00000090375 1 3 3 80 1 215257604 215257624 CACCTACGATGGGTATGAGAG 60 215256750 215257562 ATTTCATCATCGCCAGCAG 59 NA Rattus norvegicus 81 Hey1 ENSRNOG00000011593 ENSRNOT00000015537 2 1 1 80 2 95320363 95320384 CTACAGCTCCTCTGATAGTGAG 59 95320422 95320653 GAACTCAAGTTTCCATTCTCGT 59 NA Rattus norvegicus 81 Olr586 ENSRNOG00000030946 ENSRNOT00000047110 2 1 1 60 3 75907153 75907173 ACATCTGTTATTCCACTGCTG 58 75907194 75907213 TTGCATTTGGTCAGTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 2 4 4 80 12 777835 779331 GATGTGAAAGAATGCCTTTGG 58 779370 779391 CTTTCTGATAAATGCATGGCTG 59 NA Rattus norvegicus 81 Ak2 ENSRNOG00000000122 ENSRNOT00000000134 2 1 1 82 5 147195229 147195248 ATTTGGAGACTCCTTCCTGC 60 147195292 147195404 GTCATCAAGCATTTCAGCCT 59 NA Rattus norvegicus 81 Sugp1 ENSRNOG00000052111 ENSRNOT00000078005 3 1 1 81 16 21103410 21107394 CACCTCTTTCAGTTCAAGATCTC 59 21103351 21103369 GACAACTCTGTGACACCCA 60 NA Rattus norvegicus 81 Olr809 ENSRNOG00000026333 ENSRNOT00000038359 1 1 1 60 4 72389056 72389077 CTTTCAATTACCCTTCTGTCGT 59 72389098 72389116 TACAGCCAGCATCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces4a ENSRNOG00000014257 ENSRNOT00000019169 2 1 1 80 19 37105885 37105903 AACCTCGAAGTGATGGAGC 60 37105947 37106170 CTCTGGATGAGCCTTTGGA 59 NA Rattus norvegicus 81 Bco1 ENSRNOG00000012027 ENSRNOT00000016880 3 1 1 80 19 49648468 49648486 CTATGCCACCACAGAGACC 60 49648528 49650383 TTCCGGTAATCAACCTTCTCC 60 NA Rattus norvegicus 81 LOC102553249 ENSRNOG00000045707 ENSRNOT00000075012 1 1 1 80 3 167225448 167225469 CCTTCTCAGAAGAGTCTCTACC 59 167225078 167225412 GTCTTCCCAAATGTATCCTATAGC 59 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 2 2 2 83 6 111184025 111184043 GTCTGTCCTGAAGCAAGTG 59 111184089 111184599 TTCTCCAGAGCATTAAAGCC 58 NA Rattus norvegicus 81 Plekhd1 ENSRNOG00000038297 ENSRNOT00000058301 1 1 1 80 6 104365708 104365727 TGTGGAGCAAGAGAAGAAGG 60 104365766 104367091 TTCTTCTCTATGGAGAGTTCCTC 59 NA Rattus norvegicus 81 AABR07054721.1 ENSRNOG00000048632 ENSRNOT00000049457 2 1 1 60 3 167759204 167759223 GGCTTTGTTGGATCCTTCTC 59 167759163 167759183 CCTATATGTCTCCAGCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpf3 ENSRNOG00000008086 ENSRNOT00000010926 3 1 1 81 6 106724572 106724593 CAACATGAACAAGAAGAGTGGA 59 106721679 106724531 TTCTCCTCCCAAATGAGCAG 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 3 3 5 81 20 3409195 3409321 GAGCATCAGAAGCAGATTCAC 60 3409134 3409155 TCTTCTTCCTTGACGACTACAG 60 NA Rattus norvegicus 81 Alb ENSRNOG00000002911 ENSRNOT00000003921 3 1 1 80 14 19182293 19182312 AATATGAAGCCACACTGGAG 58 19181162 19182250 GCTGAAATTCTGCAAGCAC 58 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 3 2 2 80 3 128336300 128336421 AAGGAAATCTGCGAGAAAGAG 59 128336460 128336481 CTTGGCTTCTGTTATCTTCTCC 59 NA Rattus norvegicus 81 Tnp1 ENSRNOG00000017611 ENSRNOT00000023769 1 1 1 116 9 80295378 80295396 ATGAGGAGAGGCAAGAACC 59 80295082 80295298 ATTGCGACTTGCATCATCG 59 NA Rattus norvegicus 81 Olr1624 ENSRNOG00000045711 ENSRNOT00000041733 2 1 1 60 15 26780668 26780686 TACAAAGCCTGCATCACTC 58 26780626 26780644 GAAACATTTCTCCCGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm8 ENSRNOG00000015180 ENSRNOT00000020388 2 1 1 80 1 196849212 196849233 CCACAAATACATTCTGAGCGAG 60 196849655 196851919 TTCAACTCTGGGATCTGGTC 59 NA Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927,ENSRNOT00000008763 1 2 2 60 4 150484796 150484814 TGAATGTGGTGAATGTGGT 57 150484754 150484773 TCTCTGATGTTGGGTAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2o ENSRNOG00000011007 ENSRNOT00000014699 1 1 1 83 10 105518201 105518378 GCTCAACTGACAGTCAGTG 59 105518136 105518154 AAATGATGCAGTTGGTGCC 59 NA Rattus norvegicus 81 Gata3 ENSRNOG00000019336 ENSRNOT00000026187 2 1 1 65 17 72445297 72449867 ACTCCACAATATTAACAGACCC 58 72449892 72449911 ATCTTACGGTTTCGGGTCTG 60 NA DesignRelaxed Rattus norvegicus 81 Spdye4 ENSRNOG00000043425 ENSRNOT00000066744 1 1 1 80 12 13417944 13418525 GTGTCAGACAAGTATCTCCTG 58 13417884 13417902 GATTGGCCTATACTGCCAG 58 NA Rattus norvegicus 81 Slc30a4 ENSRNOG00000000170 ENSRNOT00000000184 3 1 1 80 3 114827550 114827568 GAGGAAGGTGAAGACCAGG 59 114819843 114827509 ATGTATCCACCTACAAGCTCTC 60 NA Rattus norvegicus 81 Mei1 ENSRNOG00000007003 ENSRNOT00000009428 3 1 1 80 7 123310689 123314896 CTCTGTATTGAAGTCCTTATCCAG 59 123314934 123314953 GTGACACTCATTCAGTAGGC 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 1 4 4 80 7 142043311 142043439 TTGGACAAATATGGCTTGCG 60 142043250 142043270 CTCATATCCAAATGTGAGGGC 59 NA Rattus norvegicus 81 LOC100909686 ENSRNOG00000046718 ENSRNOT00000072865 3 1 1 60 1 169741867 169741888 TCTACATAGCCATGTGTTACCC 60 169741908 169741927 GCGATGACCACATTAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfic ENSRNOG00000004505 ENSRNOT00000006168 3 1 1 80 7 11169069 11170533 TTACACTGGACACGACAGAC 60 11170576 11170594 GAGACACCTGGATCAGCTC 60 NA Rattus norvegicus 81 Tomm7 ENSRNOG00000043114 ENSRNOT00000065962 2 1 1 98 4 7836013 7836031 GCAAGGAAGCCAAACAGAG 60 7836090 7838582 TTGTGAATCCCAGGTAAATCAC 59 NA Rattus norvegicus 81 Il1rapl1 ENSRNOG00000029663 ENSRNOT00000076283 3 1 1 80 X 55765954 55765972 CTCTGACTGATAAGCCACC 57 55497068 55765911 CTGAACCACCTAGTTGAGTC 58 NA Rattus norvegicus 81 Prf1 ENSRNOG00000000562 ENSRNOT00000000681 1 1 1 80 20 30920153 30920256 GCCAAGTTGATGGAGATCAG 59 30920297 30920317 ATTCCCAAAGTCCATCTTGTC 58 NA Rattus norvegicus 81 Olr223 ENSRNOG00000019583 ENSRNOT00000026488 3 1 1 60 1 171027912 171027932 TGATCTCAGCCATCTATGCAG 60 171027872 171027891 CTCAGGCAGTAGATGATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr522 ENSRNOG00000049234 ENSRNOT00000047747 2 1 1 60 3 74255832 74255855 CTGTTACTCAACTATCATCACACC 59 74255795 74255816 ATTCTTTATGGAGGTCAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn16 ENSRNOG00000055138 ENSRNOT00000083319 1 1 1 82 11 77684544 77685667 CTTCAAAGATGTTGGACCTGAG 59 77684483 77684501 ATTTGGCCATGGAAACACC 59 NA Rattus norvegicus 81 Olr536 ENSRNOG00000009943 ENSRNOT00000013201 2 1 1 60 3 74596761 74596780 CACTCCTCAGTTCTCTTCTC 57 74596720 74596738 AGGATGGCTGAGATGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Creld1 ENSRNOG00000009414 ENSRNOT00000013052 2 1 1 111 4 145448585 145448735 AGTGCCTAGATGTGGATGAG 59 145448809 145448827 TCCTGTCTGAAGCCTTCAG 59 NA Rattus norvegicus 81 Zfp1 ENSRNOG00000019059 ENSRNOT00000025761 2 1 1 82 19 43882378 43884776 CTTTCAGTGGAAGTGTGGA 57 43884822 43884840 GTTGTAAGTGATGGTGCCT 58 NA Rattus norvegicus 81 LOC100909453 ENSRNOG00000048482 ENSRNOT00000041532 2 1 1 89 12 5132809 5132828 CCCTTATGGTCCAGTAGGTC 59 5132879 5187800 CATACAGACCTGGGAGTCTC 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 2 1 3 90 20 31273158 31273176 CAGTCACAGGAATCACTGG 58 31275565 31276864 GGTCCTTTGTAGCAATCTCC 58 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000673 3 1 3 80 20 31303053 31303071 ACCACTCTTCTTCACATGC 58 31303114 31303511 CGTCAGTTCTTCTGAAGTGG 59 NA Rattus norvegicus 81 Efnb1 ENSRNOG00000006877 ENSRNOT00000009635 1 1 1 80 X 68901853 68901871 AACACTGTCAAGACAGCCA 60 68901915 68902165 CTGGTTCACAGTCTCATGC 59 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 2 2 3 233 20 3439934 3439952 CATCTCCACACCATGACTG 58 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Dus2 ENSRNOG00000019819 ENSRNOT00000026827 3 1 1 80 19 38021138 38021162 CTCAGTACTCTTGTTAAAGGAACAC 60 38021198 38021357 GTTCAGGGTATCTTCTAGCGA 59 NA Rattus norvegicus 81 Inadl ENSRNOG00000007551 ENSRNOT00000010211 1 1 1 80 5 117083054 117083073 GGAAATCGGAGAAAGACTGG 58 117083113 117086511 ATGTCCTCTGGATATACGTCTG 59 NA Rattus norvegicus 81 Fam175b ENSRNOG00000017222 ENSRNOT00000023214 2 1 1 80 1 204876278 204876297 CTTCAGCTTCATCTCTACCG 58 204876337 204877918 TGATTATACCTGCGATTTGGTC 59 NA Rattus norvegicus 81 Rhox7 ENSRNOG00000031534 ENSRNOT00000049435 2 1 1 80 X 123979763 123979783 AATCACTATCCTAGTGCTGCA 59 123976977 123978229 AAACCAATTCTCCACTCTGGA 59 NA Rattus norvegicus 81 Dnajc5b ENSRNOG00000012851 ENSRNOT00000017387 2 1 1 80 2 104362210 104362231 AAGAGGAGTTCTATGTGTCACC 60 104362266 104382547 CAACTGGAAAGTCCATATCTTTCTC 60 NA Rattus norvegicus 81 Tmem55b ENSRNOG00000009948 ENSRNOT00000013225 3 1 1 81 15 27854434 27854452 CCTCTGAGTCCAGAACCAC 59 27854211 27854391 TGAATTCTGTCCACAGAAACG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 3 2 2 83 3 101908247 101910817 ACAGAAACGAACCAGTTCTG 59 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Wrap73 ENSRNOG00000014805 ENSRNOT00000019873 2 1 1 80 5 171441620 171444151 AAGTACCTGGCTTCCTGTG 59 171444190 171444213 GCATGTATACAACTGAAGGATCTG 60 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 1 2 2 80 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277527 171278573 TTCAGAACTTGCACCTGTG 58 NA Rattus norvegicus 81 Id1 ENSRNOG00000021750 ENSRNOT00000029660 2 1 1 166 3 148215954 148215973 AACTCTGAGTCTGAAGTCGC 60 148216323 148216341 TCCATCTGGTTCCTCAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ckm ENSRNOG00000016837 ENSRNOT00000022895 3 1 1 80 1 80329240 80329259 GTGATCTCCATGGAGAAAGG 58 80329301 80329996 GATCTCCTCAATCTTCTGCA 57 NA Rattus norvegicus 81 Olr569 ENSRNOG00000059247 ENSRNOT00000079367 3 1 1 60 3 75582808 75582832 CTTATGTTTCTGTGGGTCTAATGAG 60 75582847 75582868 GTAAAGTGGAGGTAGATCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 1 2 2 80 16 2365908 2365929 CTAGAGAAACTGGCTTTGAACC 59 2364347 2365872 CTGAAGAACTGAAATCTGAAGGAC 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365,ENSRNOT00000080567 1 2 2 80 12 12640140 12641447 GGATGGTCATGGTTGTTCG 59 12641491 12641509 CCTCCTCTTGGTACTCCAC 59 NA Rattus norvegicus 81 Lmf1 ENSRNOG00000000230 ENSRNOT00000000246 3 1 1 81 10 15025339 15025357 CCAAGCAGGTCATGAACAC 59 15025400 15025568 CGTTCTTTGGTGATACTTCCG 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 2 2 2 92 4 181346953 181347346 AAGTTGTGGAGATAAGCCAG 58 181346880 181346898 TTCTGTGTAAGTGGGAAGC 57 NA Rattus norvegicus 81 Olr1385 ENSRNOG00000046800 ENSRNOT00000072557 2 1 1 60 10 34360622 34360644 GTATGGACACATCCCTATTTGAG 59 34360584 34360602 AACAGCAGCATGAAGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl6 ENSRNOG00000002843 ENSRNOT00000003823 3 1 1 93 14 18861960 18861981 CCTTAGCTCCAAGAATTAACCC 59 18861772 18861909 AACTTAGCTATGACTTCCACCT 59 NA Rattus norvegicus 81 Mtm1 ENSRNOG00000002516 ENSRNOT00000062057 3 1 1 80 6 18827084 18829745 TGATATCACCTGCAAAGACCT 59 18829787 18829805 ACGTCAAAGATGTCCCTCC 59 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 1 1 1 60 17 66240143 66240335 GGAAAGAGGTGCAAAGAAGAC 60 66240357 66240375 GCTTTCACCCATCTTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Acy1 ENSRNOG00000011189 ENSRNOT00000015851 3 1 1 80 8 115136394 115136495 GTAGACATGAAGGCCTTCGA 60 115136333 115136353 CTGAGCAAACTCAAAGGTGAC 60 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 1 2 2 80 20 13115073 13116369 CATCCTAGATACAGATGACATTCC 59 13116407 13116426 AAGTATGCAAGCACATCTGG 59 NA Rattus norvegicus 81 Fam185a ENSRNOG00000048371 ENSRNOT00000074662 3 1 1 108 4 10269374 10269392 AGACGACATTGATCCCGAG 59 10266540 10266559 AATATTCTGCACGCTCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 1 2 3 80 1 79066942 79077380 TATATCTCTACGTGTACAGCTCAC 60 79077416 79077437 GTGGCACTGATTCAATACTGAG 60 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 2 3 3 60 13 79888255 79888274 ATCTATGCCCGGAAATACCA 59 79888296 79888315 GTTGTATCACCACACTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 3 1 2 61 15 28018083 28034116 TCCAGGCACTTTCTAGGTG 59 28034141 28034159 ACAAGAGCAGAAGCAAGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000039998 2 1 2 64 20 3691054 3691072 CCTGATCTGTCTGGGTCTG 59 3690797 3690815 AGACTTTCTCCTCTGGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Btc ENSRNOG00000002728 ENSRNOT00000003686 2 1 1 80 14 18263350 18263371 CAAGCAATACAAGCATTACTGC 59 18263412 18267268 TTCTCACAGATGCAGGAGG 59 NA Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 1 2 2 80 2 154522528 154526010 GCCTTACATCAGGTCACTC 58 154522466 154522486 TCCAATAAGAGGATCACTGAC 57 NA Rattus norvegicus 81 Krcc1 ENSRNOG00000007124 ENSRNOT00000009327 1 1 1 113 4 99143852 99145495 CTGATAACGATAATCCCTTTCTGTC 60 99145565 99145584 TCTAAGCCTCTGGCTTTCTG 60 NA InUTR Rattus norvegicus 81 RGD1563780 ENSRNOG00000048565 ENSRNOT00000074218 1 1 1 80 15 29349565 29349757 AGATTTGCTGGGTGAGAGG 59 29349503 29349521 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029,ENSRNOT00000065649,ENSRNOT00000089897 3 3 3 80 4 38263991 38271543 CAAGAGTAATGAGGACTCGC 58 38271585 38271604 CAGCAAATCAGAATGTGGTC 58 NA Rattus norvegicus 81 Myoc ENSRNOG00000003221 ENSRNOT00000004386 1 1 1 80 13 80525310 80526681 AGAGGGAGACAAAGGATGTG 59 80526723 80526742 TTTCCAGTGATTGTCTCAGC 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000089899,ENSRNOT00000088239 3 4 7 85 9 43743201 43743219 GAGCAAGCCATCAGATCCT 60 43749935 43751263 GCATCCAACTTCTCTTTCTCC 59 NA Rattus norvegicus 81 Col24a1 ENSRNOG00000014143 ENSRNOT00000019210 1 1 1 80 2 251429983 251434796 GACTGCAAGATTCAGGATGG 59 251434837 251434857 GGTTACAGGAAGCTGATTAGG 58 NA Rattus norvegicus 81 Ppm1e ENSRNOG00000024730 ENSRNOT00000003859 2 1 1 80 10 74566794 74566813 ATGAAGTCCTCCAGAGTGAC 59 74562155 74566752 TCTCAATTTCCACAGTCCCT 59 NA Rattus norvegicus 81 Hsd11b2 ENSRNOG00000017084 ENSRNOT00000023130 3 1 1 85 19 37480165 37480183 CATTCAGCTGTGAACTGCT 59 37480231 37480407 CACATTAGTCACTGCCTCTG 58 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382,ENSRNOT00000074378 3 3 3 83 5 159066880 159066899 TCTTCATCACACCAAATCCC 58 159056497 159066834 GGTTCTCCTCCCTTAGTCC 59 NA Rattus norvegicus 81 Il17ra ENSRNOG00000011153 ENSRNOT00000014885 1 1 1 80 4 153012105 153012124 AAATGACTGCTTGAGACACG 59 153012873 153013105 TAGTCTGCGGCTGTTATGG 60 NA Rattus norvegicus 81 Rqcd1 ENSRNOG00000016034 ENSRNOT00000021548 2 1 1 83 9 81794984 81795004 GACAGCACACCAATCTAACAG 59 81795049 81799431 AAAGCTGACCTGGTCTCTG 59 NA Rattus norvegicus 81 Zfp827 ENSRNOG00000011697 ENSRNOT00000015929 2 1 1 80 19 32404052 32404070 AACTTGCTGGTCATCTCTG 58 32403672 32404009 ACATTCGAACCCTTTCTCTG 58 NA Rattus norvegicus 81 P2ry12 ENSRNOG00000013902 ENSRNOT00000018600 2 1 1 94 2 149442722 149444438 AATAACCAGGACCATGGAGG 59 149442647 149442665 TGTAGTCTCTGCTGCACAG 59 NA InUTR Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000073549 2 1 2 81 3 55462462 55464615 TGAAACAGGTCCAGGAAGTC 60 55464659 55464677 GTTTAAGGCGGCTGTTACC 59 NA Rattus norvegicus 81 Cass4 ENSRNOG00000021560 ENSRNOT00000035245 1 1 1 119 3 170433059 170434379 ATGTCTGTGGGCAGAAGTC 60 170436641 170436660 GAGAAGGAGAAGGAAGAGGG 59 NA Rattus norvegicus 81 Adam23 ENSRNOG00000012424 ENSRNOT00000040525 2 1 1 80 9 70232883 70238892 CACAAGACGTATAAGAAGCAC 57 70238932 70238952 AGAATCTACAAGGTTGACCAC 58 NA Rattus norvegicus 81 LOC690288 ENSRNOG00000048741 ENSRNOT00000075792 2 1 1 80 13 100050903 100053757 TCCGAATTGAGGGTCTACAC 59 100053797 100053818 CTTCTTCTCTAGAAGGATGCAC 58 NA Rattus norvegicus 81 Exoc5 ENSRNOG00000013804 ENSRNOT00000067735 3 1 1 80 15 25907417 25907437 GAAGTGCTATGATCCTACAGC 58 25905628 25907377 AATCTTGAATACCTCCTGTGC 58 NA Rattus norvegicus 81 LOC681470 ENSRNOG00000049477 ENSRNOT00000071206 3 1 1 60 13 91769086 91769104 CACAGTGTTCACTCCTCTC 58 91769125 91769146 CTTGACTTCTTTGTTTCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 3 2 2 83 2 243148293 243148311 TTGTGCTGATCCTTGTGTC 58 243148358 243148852 TAGTTTGTCCAGACCTGGG 59 NA Rattus norvegicus 81 Zc3h15 ENSRNOG00000005256 ENSRNOT00000007276 3 1 1 81 3 71037025 71037043 AGAGCTGGTCAACGATGAC 60 71037086 71037572 AGAGTCATCAACCTCATCACC 60 NA Rattus norvegicus 81 Olr386 ENSRNOG00000056884 ENSRNOT00000084162 3 1 1 60 1 64492386 64492406 GGAATAGCTTTCTTCAACACC 57 64492428 64492446 TGAGGCAGTAGATGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx32 ENSRNOG00000018119 ENSRNOT00000024655 1 1 1 80 1 205803535 205805219 GAAAGAAGACAGGTATACAATCCC 59 205803478 205803496 GATCTCTGCTTGGCTTTGG 59 NA Rattus norvegicus 81 Ptp4a2 ENSRNOG00000050044 ENSRNOT00000074415 2 1 1 80 5 148054487 148054506 AACTTTGGTCCGAGTTTGTG 59 148054549 148057664 AATGGCCAGTCTAGAACGT 59 NA Rattus norvegicus 81 Wt1 ENSRNOG00000013074 ENSRNOT00000067940 3 1 1 83 3 95174270 95174288 ACCCAGGCTGCAATAAGAG 60 95174333 95176383 ACTGGTATGGTTTCTCACCAG 60 NA Rattus norvegicus 81 AC095263.1 ENSRNOG00000054374 ENSRNOT00000078918 1 1 1 80 20 7140681 7140699 TATAGCTATGACCCGGCAG 58 7140514 7140638 ATGAACCACCTTAGGGTCTC 59 NA Rattus norvegicus 81 Rn60_12_0368.1 ENSRNOG00000046100 ENSRNOT00000074696 3 1 1 60 12 34868481 34868501 CCAGAAATCCTCAACCAACTC 59 34868441 34868461 CTGTGATGTCTACAAATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h13 ENSRNOG00000011237 ENSRNOT00000015467 3 1 1 80 15 57349123 57351614 ATTACAGAAGGTCACCGGA 58 57351656 57351676 ATTCAGAATCCACATCCTGAC 58 NA Rattus norvegicus 81 Abcf3 ENSRNOG00000001710 ENSRNOT00000002327 2 1 1 80 11 84034085 84034106 GAGTAAACTGAAGATGCTGGAG 59 84028255 84028350 TCAGGGAACTTCAACACCA 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 2 2 2 80 1 13287073 13287093 CAGTTCCCATTCGTATGACTC 59 13287134 13288139 GGTTAGTATGATCACCGCTG 58 NA Rattus norvegicus 81 Spns1 ENSRNOG00000017621 ENSRNOT00000024185 1 1 1 80 1 197776270 197777734 TCCAGACTGTGTTCATTTCCA 60 197776210 197776231 GGTACTTTCGATTGTACCTGTC 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 3 2 2 80 18 76710204 76710222 AAGACAGGTGTCTCTGCAG 59 76707476 76710162 CAGAAGATGCCTCATGTAGGT 60 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 1 2 2 80 14 22006512 22006531 CAGCAAGAGAATAGCAGCAG 59 22004441 22005932 GTTGACGAACTCCTCATTAAGAC 60 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960,ENSRNOT00000078947 2 2 2 85 7 124153745 124153763 ACAGTTCAAGCAAGGTGTG 59 124150696 124153696 CGTAGCGATCCTGAATGGA 59 NA Rattus norvegicus 81 Snai3 ENSRNOG00000013586 ENSRNOT00000018387 2 1 1 102 19 55278729 55279905 CCCATACAGGTGAGAAGCC 60 55278645 55278663 TTCTTGGTACCAGCGTGAG 60 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830,ENSRNOT00000067665 1 2 2 80 10 85002384 85002487 TGCATTTGGAAACCCAACTC 59 85002530 85002548 CTCATTCAACTCCAGGGCA 60 NA Rattus norvegicus 81 Sept3 ENSRNOG00000007686 ENSRNOT00000010491 2 1 1 80 7 123514363 123514855 GATTGGGCATGTGATAGAGG 58 123514898 123514916 TTGATCTGGTCTCCAAAGC 58 NA Rattus norvegicus 81 Olr419 ENSRNOG00000007962 ENSRNOT00000010465 2 1 1 60 3 20993638 20993660 TAACCATATCCCTATTCCTTGCC 60 20993677 20993698 TGAGACAGGAGAATGATATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549,ENSRNOT00000014733 1 2 2 80 4 147775428 147775446 CTTTGCTTCTGGATCTGCT 58 147775489 147777684 TCATTGTGCGTGTACTTCAG 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218,ENSRNOT00000051075 2 3 3 81 7 71071178 71071661 AGAACTACCTGGCATCTTATCTG 60 71071701 71071720 CAGTCAGTCACCAGAGACAG 60 NA Rattus norvegicus 81 Bmp8b ENSRNOG00000033209 ENSRNOT00000050949 1 1 1 80 5 140803953 140812329 GTCAACATAGTGGAGCACG 59 140812370 140812391 GATCTGGGTTAAGTCAAAGTGG 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000012422 1 1 2 80 2 166655621 166681792 AAAGGCAGACTTTCCACAG 58 166655559 166655577 TTGATAGTAGAGCCAGGCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc14 ENSRNOG00000021469 ENSRNOT00000033420 3 1 1 80 11 69298518 69301103 GACCGAAGAACAAGAGGAC 58 69298456 69298474 CTCACTGCTGAAAGTCCAG 58 NA Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 3 2 2 80 7 76136436 76159325 GAGGCGAAGATCTTCATCAC 59 76159366 76159386 CATCAGAGGAAGTCCTTTCAC 59 NA Rattus norvegicus 81 Tmem207 ENSRNOG00000048672 ENSRNOT00000074688 2 1 1 81 11 77654669 77654687 AAAGCTGTGGAACTGATCG 58 77654731 77663703 ATTTCTGCACCATAAACGGG 59 NA Rattus norvegicus 81 Rapgefl1 ENSRNOG00000027871 ENSRNOT00000030425 2 1 1 80 10 86763464 86763485 CATCTCCTAGCATTCAGTAGCT 60 86763525 86763795 GCCTCCATGTCTAGACAGAG 59 NA InUTR Rattus norvegicus 81 Wdr63 ENSRNOG00000014893 ENSRNOT00000020141 2 1 1 80 2 251916338 251916356 GACTACTATGGAACCCTGC 57 251914725 251916295 GTTCACACTTGATACCTCGT 58 NA Rattus norvegicus 81 Bahcc1 ENSRNOG00000043102 ENSRNOT00000066736 3 1 1 80 10 109461142 109461160 GTGAAGAGGAAAGGTCACG 58 109461201 109461828 GGTCTTTGTTGTCTTGTAACAG 58 NA Rattus norvegicus 81 Tcerg1l ENSRNOG00000016737 ENSRNOT00000031734 2 1 1 80 1 210588466 210588485 CTGAAAGCAGTGATGGATCC 59 210570464 210588423 AGCTTTCAGTCCTGTTCCT 59 NA Rattus norvegicus 81 Mical1 ENSRNOG00000000307 ENSRNOT00000000337 1 1 1 80 20 46203346 46203364 GAAATCAGTGGCGTAGCTC 59 46203405 46203990 GTTCTCCAGATCAATACCTGTG 59 NA Rattus norvegicus 81 Arfrp1 ENSRNOG00000013992 ENSRNOT00000019038 1 1 1 80 3 176861360 176863755 TGTGGGACAAGTACTATGCAG 60 176861300 176861319 TTGATTCTGACAGCCTCTCC 60 NA Rattus norvegicus 81 RGD1564463 ENSRNOG00000003601 ENSRNOT00000004815 1 1 1 80 13 99388114 99392484 AGATCCTGGCAAAGTATCCA 59 99392525 99392545 GAATCATTGCGGTTATGATCC 58 NA Rattus norvegicus 81 Ankrd11 ENSRNOG00000027906 ENSRNOT00000031389 1 1 1 80 19 55717318 55717337 CAACGATGGTGAATCTCCTG 59 55716817 55717277 CCTCTTCTTCAGAGCTCTCAG 60 NA Rattus norvegicus 81 LOC100910090 ENSRNOG00000046441 ENSRNOT00000071682 2 1 1 60 4 161213607 161213626 AAGTTGAGAAAGCATTGGGT 58 161213648 161213667 AGCTTGAATCCCATACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr695 ENSRNOG00000050826 ENSRNOT00000047996 2 1 1 60 3 78323400 78323421 CTGGCTTTCTTGTCTTTACTGG 60 78323361 78323381 CAATCATCTTGGGTGTCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtm1 ENSRNOG00000057711 ENSRNOT00000080433 2 1 1 80 19 864821 868660 TTGAGGATGTGCATTACTGC 59 864760 864781 AATCATGATGGCTACAAACAGG 59 NA Rattus norvegicus 81 AABR07017748.1 ENSRNOG00000046957 ENSRNOT00000072977 2 1 1 61 15 30612436 30612552 GGGATAAACTTTCTCCTGAGAG 58 30612572 30612592 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Tpsab1 ENSRNOG00000024181 ENSRNOT00000024767 1 1 1 83 10 14701826 14702743 CAATGATGTAAGCCTGCCAC 60 14701762 14701781 TACTTCAAGTCACAGAGGCG 60 NA Rattus norvegicus 81 Nfe2l3 ENSRNOG00000010886 ENSRNOT00000014826 1 1 1 80 4 81231401 81231644 CTGAACATTCTCTAGAGGGCA 59 81231684 81231704 CTGAGGGATTCACACTTTCAC 59 NA Rattus norvegicus 81 AABR07017639.1 ENSRNOG00000049830 ENSRNOT00000074782 1 1 1 95 15 29532819 29532955 CTCCTCATCCTCACAAGGG 59 29532742 29532766 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 AC133403.1 ENSRNOG00000046836 ENSRNOT00000002447 1 1 1 80 11 70060039 70062342 GGTCGTCTTTGACAATGCT 59 70062386 70062404 GGAAACCTGACAACCAGAC 58 NA Rattus norvegicus 81 Mepce ENSRNOG00000045911 ENSRNOT00000073353 3 1 1 140 12 21723413 21724515 TCGTCACGGGTAACTATGTC 59 21724618 21724636 GGCGGAACATTCTCTTCAG 59 NA Rattus norvegicus 81 Olr559 ENSRNOG00000045869 ENSRNOT00000037577 2 1 1 60 3 75390285 75390305 AGGATTCTGTACAGCATTTGG 58 75390325 75390345 GTATAGCACAAGCCAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000078589 2 3 5 80 1 15813302 15815283 GTTCATCACGTGAAAGAGCA 59 15815323 15815344 AGTAGCTTTCTGGTATGAAGTG 58 NA Rattus norvegicus 81 AABR07035751.1 ENSRNOG00000046696 ENSRNOT00000074863 2 1 1 80 12 21670225 21670244 AACAGAATCTGGCTATGGCT 59 21669874 21670184 GATATCCTGCTGAATTCCCAG 58 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716,ENSRNOT00000091693 1 2 2 80 6 124677489 124677509 CCAACTTAACAGGACATGCAG 60 124652095 124677447 TCCCATAAGCTCCAGTTCC 59 NA Rattus norvegicus 81 Mir6322 ENSRNOG00000047842 ENSRNOT00000072595 2 1 1 60 12 26825108 26825126 TGTACGCATCTTTCCTGTC 58 26825066 26825085 GAGGAAGACAGAGACCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfb2m ENSRNOG00000002695 ENSRNOT00000003618 3 1 1 80 13 97837042 97837061 GGGCATTACTTAAAGCTGGT 58 97834308 97837001 TCCTTAAGGACTCCAAATGTG 58 NA Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 3 1 1 97 6 126767112 126767130 GTAGTCCTGTTCTCGAAGC 58 126767191 126767982 ATTCCAACAACCGATTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 3 1 1 61 1 53562977 53562995 ACTTTGGGTGATGTGACTG 58 53562778 53562955 TTCTGTACAGTATTTCCCTCTG 57 NA DesignNoJunction Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000082473,ENSRNOT00000044470 2 3 4 80 7 123635859 123636017 TGAGATAGAGAAGGCCAAGG 59 123635798 123635817 CCAAACAGGTCATTGACCAC 60 NA Rattus norvegicus 81 LOC100910636 ENSRNOG00000024425 ENSRNOT00000032838 1 1 1 80 12 21697003 21697025 CATGATAGAATGTGATCCTGACC 59 21696579 21696964 ACATGGTACTTAGACGGCAG 60 NA Rattus norvegicus 81 Foxh1 ENSRNOG00000015371 ENSRNOT00000020696 2 1 1 80 7 117732160 117732179 CACTTACTTGGCCATGATCG 59 117731835 117732118 ACCTGACGGATAATCTGAGC 59 NA Rattus norvegicus 81 Slc10a7 ENSRNOG00000011991 ENSRNOT00000015985 2 1 1 87 19 32892712 32892730 CAGCCTCATCCTCATACTG 57 32882991 32891348 CGAGTTATTCCGTGTGGAG 58 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000086282,ENSRNOT00000080062,ENSRNOT00000090832 3 3 5 60 9 81675600 81675620 TCATTGGTTCATTCCCTAGGT 59 81675640 81675660 CTGTAGGAACTCATCTACGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Matn2 ENSRNOG00000006060 ENSRNOT00000008361 3 1 1 80 7 73207048 73207392 CAATCTTCAGGAAACCCTCG 59 73207433 73207453 ATTTGCAAGGTTCTGGAACTG 60 NA Rattus norvegicus 81 Olr424 ENSRNOG00000007977 ENSRNOT00000010493 3 1 1 60 3 21130636 21130658 CTCATTTCTCCCATGCTAAATCC 60 21130598 21130619 CTCCTTTAACTTCCTGGTTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499544 ENSRNOG00000030204 ENSRNOT00000046715 2 1 1 89 2 62004959 62011244 TAGGAACTTGTCACTGTCCTG 60 62011295 62011313 TCTCGGTCAGTTCACACTG 59 NA Rattus norvegicus 81 LOC499544 ENSRNOG00000030204 ENSRNOT00000046715 3 1 1 90 2 61994522 61999323 AAACCTCCAGAAGGACAGC 60 61999377 61999395 GAAAGCACAGGAAGTTCCG 59 NA Rattus norvegicus 81 Tex264 ENSRNOG00000013201 ENSRNOT00000018122 2 1 1 80 8 115364460 115376247 GGATGTCTACATCAAGGAGC 58 115364399 115364418 CACATGAAGTGGATCTGGTC 58 NA Rattus norvegicus 81 Ubqln4 ENSRNOG00000019933 ENSRNOT00000026994 1 1 1 80 2 187917996 187918460 CTGCATCAATTCTTTCTGGCT 59 187918501 187918520 GTAGCTCCATAAAGTTGGCG 59 NA Rattus norvegicus 81 Mllt10 ENSRNOG00000022249 ENSRNOT00000034157 2 1 1 80 17 84936825 84936855 AATCCAGGAACAATGTCAGC 59 84939977 84939997 AGAAGATGACTTTACACTGCC 58 NA Rattus norvegicus 81 Lasp1 ENSRNOG00000004132 ENSRNOT00000005522 3 1 1 91 10 85744809 85752115 TGGATAAGTTCTGGCATAAAGC 59 85752167 85752185 AGGCTTCTTCTCGTAACCC 59 NA Rattus norvegicus 81 Olr634 ENSRNOG00000045745 ENSRNOT00000047382 2 1 1 60 3 76768251 76768271 GGACATTTGCTATACCTCCTG 58 76768291 76768311 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg5 ENSRNOG00000019590 ENSRNOT00000026514 1 1 1 80 2 187719004 187719023 TGCTTCAGGAAAGGAGATGG 60 187719066 187719847 TGATAGCGTGACAGATCCC 59 NA Rattus norvegicus 81 Smg5 ENSRNOG00000019590 ENSRNOT00000026514 2 1 1 80 2 187719005 187719023 GCTTCAGGAAAGGAGATGG 58 187719067 187719848 CTGATAGCGTGACAGATCC 58 NA Rattus norvegicus 81 RGD1561777 ENSRNOG00000024543 ENSRNOT00000035047 2 1 1 83 20 44999770 44999788 CATTCTGCAAGATAGCGGC 60 44998648 44999723 CGTTCCCACCTGTATCCAG 60 NA Rattus norvegicus 81 Zranb3 ENSRNOG00000003979 ENSRNOT00000005355 1 1 1 80 13 44701971 44701991 CAATCAGTTTCAGAAGGACCC 59 44698044 44701930 GCGGTAAACGTTAAACCCTG 60 NA Rattus norvegicus 81 LOC681241 ENSRNOG00000021898 ENSRNOT00000034474 2 1 1 80 17 86310688 86322053 TCAAATTCCATTCCAGACTTGC 60 86310629 86310648 AGTCTGTCTGAGTAGCATGG 59 NA Rattus norvegicus 81 Igfbp6 ENSRNOG00000010977 ENSRNOT00000014807 3 1 1 84 7 143749627 143749645 AACGAAGAGACACCTTTGC 58 143749693 143752116 CCTTGGTAGTCTCTTCCGA 58 NA Rattus norvegicus 81 Ccnj ENSRNOG00000014551 ENSRNOT00000019521 3 1 1 80 1 260107091 260107194 TGTCTCTGCAAGATTATGCCT 60 260107234 260107254 GGATAATCCTCGAAGAAGCCA 60 NA Rattus norvegicus 81 Cyp26a1 ENSRNOG00000016750 ENSRNOT00000022549 3 1 1 80 1 256385878 256385897 AGACCCTTCGATTGAATCCT 59 256385939 256386210 GAATCTGGTAACCGTTCAGC 59 NA Rattus norvegicus 81 Dgcr8 ENSRNOG00000001886 ENSRNOT00000002581 2 1 1 80 11 86864191 86867611 GAAGAATAAAGCTGCCCGA 58 86867653 86867673 TCTTTAGGCTTCTCCTCAGAG 59 NA Rattus norvegicus 81 Ccdc61 ENSRNOG00000013767 ENSRNOT00000018495 3 1 1 80 1 79809939 79809959 AAGACCGGGAACTTTAAACAG 59 79807438 79809899 AGTGACAGACTCACTACTCTG 59 NA Rattus norvegicus 81 Dtx1 ENSRNOG00000050848 ENSRNOT00000074974 3 1 1 95 12 41413567 41413698 CCAATGGCAACAAGGATGG 60 41413755 41413775 GAAATTCCATCTTCCCAGGTG 59 NA Rattus norvegicus 81 Rora ENSRNOG00000027145 ENSRNOT00000013142 2 1 1 80 8 75598795 75601125 GAACTACCAGAACAAGCAGAG 59 75601166 75601185 TCCACCACATACTGGATAGC 59 NA Rattus norvegicus 81 Hba1 ENSRNOG00000029886 ENSRNOT00000051483 1 1 1 80 10 15603573 15603592 ACCAACATCAAGAACTGCTG 59 15603397 15603530 AGCGAACATCCTCTGTAGG 59 NA Rattus norvegicus 81 Shc4 ENSRNOG00000037134 ENSRNOT00000011084 3 1 1 85 3 117944024 117944043 TGAACCTTGACAACCAACAG 59 117930077 117934059 GTCTGTGGTATCAGGATCCC 59 NA Rattus norvegicus 81 Arhgap10 ENSRNOG00000013152 ENSRNOT00000017867 2 1 1 80 19 34272081 34272100 TGCACAGTTGGATAAGATGG 58 34272141 34292224 CCTTGGTCATTTATACCTCGT 58 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000087115 3 1 3 92 4 158637987 158703962 TTCTGCCACGATCTTACAGG 60 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA Rattus norvegicus 81 LOC100363472 ENSRNOG00000000641 ENSRNOT00000000794 1 1 1 81 20 22743092 22744994 ACACAGTCTGAACAGGCTC 60 22745039 22745057 ACCTCTCCTGGATGAGGAG 60 NA Rattus norvegicus 81 Spata45 ENSRNOG00000039841 ENSRNOT00000061146 2 1 1 60 18 19149325 19149344 CTACGAGTTCAGAAGAGGCA 59 19149284 19149304 TGACATTCATGCTCGATAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp8 ENSRNOG00000014652 ENSRNOT00000019939 3 1 1 80 1 193429310 193429328 TACTGGGACTTCCATTGGA 58 193429370 193430077 AATGAAGAGCCTAATGAGCAG 58 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000011226 ENSRNOT00000015043 2 1 1 80 X 105352692 105352718 CATGGATAAGCCTAAGTTGGAC 59 105352633 105352654 AACTGGCTTGTATCAATGAAGC 60 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000089980,ENSRNOT00000043799 2 2 2 81 5 140828305 140828324 CAAGATTGGGAACAAGCCAG 60 140825920 140828261 ACGGAAGTTCTCTGCTGTC 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000068094 2 1 10 80 15 32764058 32852782 ACTGTGGAACCAAATGTCAC 59 32852824 32852843 GCAGAGGGTGATGTTATCAG 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000011998 1 1 10 93 15 32775339 32775946 CCCAAGAGTCATGATTCATGC 60 32776000 32776019 ATTGATGGCAACAGTCTTGG 59 NA Rattus norvegicus 81 Olr1243 ENSRNOG00000061259 ENSRNOT00000088227 1 1 1 60 4 1566976 1566996 TATTTCTGTGACATCCTCCCT 58 1567016 1567036 TCTCATTAACATAGGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 1 1 1 88 1 98488137 98488155 CAAAGAATGCCTGGAAGCC 60 98487823 98488085 GAAGCCCGCAATAAACGAG 60 NA DesignNoJunction Rattus norvegicus 81 Cd9 ENSRNOG00000019556 ENSRNOT00000026633 2 1 1 80 4 157978159 157978178 ATCGATGAGGTCTTCCACAG 59 157977620 157978118 CATACCGAAGATCATCACCAC 59 NA Rattus norvegicus 81 Ube2g2 ENSRNOG00000001222 ENSRNOT00000001636 2 1 1 80 20 11704215 11704234 GTTTCCCACTTGACTACCCT 59 11702487 11704172 CGTCAGGGTAGATGTTGGG 60 NA Rattus norvegicus 81 Il6r ENSRNOG00000020811 ENSRNOT00000028234 1 1 1 82 2 189227061 189227084 ATGGTCAAAGAACGGTGTG 58 189226515 189226533 CACATGCTTTACTCCTCGC 59 NA Rattus norvegicus 81 Lars ENSRNOG00000018304 ENSRNOT00000025284 2 1 1 80 18 36539835 36539855 CAAACAATCCTTCTGACTCCA 58 36538893 36539796 CATAATTGAATCAGGCTTTCCC 58 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359 1 1 2 81 6 99434177 99434293 TCAGAGTGATGAAGGAGATCG 59 99434334 99434354 TTGAAATAGGCAGGAACAGTG 59 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 3 2 2 82 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027268 48027289 CCACTGGAATATTGAAGAAGCC 60 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 2 2 2 80 12 22157213 22157864 CTCAAACCAGGTGATCATGC 59 22157905 22157925 ACACTGACAGAGTCATATCGG 59 NA Rattus norvegicus 81 Traf3ip2 ENSRNOG00000000595 ENSRNOT00000000728 1 1 1 80 20 44715050 44719392 ACATTCATCGGATGATGCAG 59 44719435 44719453 CATTTGGGAAGAGCACAGG 59 NA Rattus norvegicus 81 Olr455 ENSRNOG00000009586 ENSRNOT00000012711 2 1 1 60 3 73124386 73124404 CTAGTGACCTGCATCTCTG 57 73124344 73124362 AGAATTGAGCCAGACATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bin2 ENSRNOG00000031930 ENSRNOT00000048262 1 1 1 80 7 142282352 142284562 TATAACAGTCGTATTGGCTGCT 60 142282293 142282313 GCTCATCTCCCTGTAGAAGAC 60 NA Rattus norvegicus 81 Higd2al1 ENSRNOG00000001071 ENSRNOT00000001416 1 1 1 60 12 4546463 4546483 CCTAACCTATGGCCTTTACTG 58 4546504 4546523 CATCATTAGTTGGGATCGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000009491 3 1 2 143 6 44361549 44361567 CTGGACAGAACCAAACGTC 59 44360325 44361155 CCCAAATGCCATTTATTTAGCC 59 NA InUTR Rattus norvegicus 81 Zfp420 ENSRNOG00000037556 ENSRNOT00000032973 3 1 1 60 1 88542949 88542968 CAGCATCAAAGAATCCACAC 58 88542989 88543009 AAGCCTTTCCACATTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 3 2 2 80 5 21291773 21293010 TATTACCAGACCCTCTTCTGC 59 21291713 21291731 AGGTAACTCCTTCACTGCA 58 NA Rattus norvegicus 81 Arg2 ENSRNOG00000053811 ENSRNOT00000083433 1 1 1 82 6 102312236 102330147 GCTTTCTATGTTGGGATGCC 59 102330186 102330210 GATTATTGTAGGGATCATCTTTGGG 60 NA Rattus norvegicus 81 AABR07006049.2 ENSRNOG00000048049 ENSRNOT00000054858 3 1 1 80 1 215303283 215305734 GTCAGAATGAGACAAGAGATGTG 59 215303225 215303243 ACTCTTTAAGGCCGATCGA 59 NA Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000088553,ENSRNOT00000010243 3 2 2 80 8 2682191 2682211 AATTCTAACTGTCCGAGTCTG 58 2682251 2682964 AATAGTACCAGTATGTCTGCC 57 NA Rattus norvegicus 81 Slc45a4 ENSRNOG00000007818 ENSRNOT00000032620 2 1 1 80 7 114830563 114847801 CCTATACTGTTACAGATAGGCCT 59 114830505 114830524 GAAGATGAGGCCAAGAACAG 59 NA Rattus norvegicus 81 Hs3st3b1 ENSRNOG00000003384 ENSRNOT00000004546 1 1 1 60 10 50401688 50401706 AAAGGTCTTGCCTGGTACC 60 50369770 50369788 CCATGGTGATCTGTCCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Mfap2 ENSRNOG00000008257 ENSRNOT00000010993 1 1 1 80 5 159537808 159537927 GACTACTATGACTACCAAGAAGTG 58 159537965 159537984 AACTTCCTGTGGTACTTGCT 59 NA Rattus norvegicus 81 AABR07043711.2 ENSRNOG00000060995 ENSRNOT00000071962 1 1 1 80 19 36238371 36239557 CATGAAGAACAGGCCACAC 59 36238309 36238327 AGAATTGACATGACCGCCT 59 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 2 2 2 80 12 22197561 22197581 GGCTACAACACAGACTATGGT 60 22197355 22197522 AGACAGACCCTTGACATTAGAG 59 NA Rattus norvegicus 81 Zbtb2 ENSRNOG00000019544 ENSRNOT00000026433 2 1 1 81 1 40917044 40921264 CATCAGACCAGTGAATGTGTC 59 40916983 40917001 TGTACATCAGGTGGAGCAG 59 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000083061,ENSRNOT00000036273 1 2 2 80 3 136768887 136783727 GCTAAATCAAGGTGCTGTG 57 136768825 136768843 CTAAGTTTGGCAGCTTCCT 58 NA Rattus norvegicus 81 Rbmx2 ENSRNOG00000007371 ENSRNOT00000048922 2 1 1 84 X 135553310 135555310 GTGTTCTCACAGTATGGAGAG 58 135555354 135555374 ACAGGAAACAGAATCCTTTGG 59 NA Rattus norvegicus 81 Rnf186 ENSRNOG00000017244 ENSRNOT00000023358 1 1 1 60 5 157417518 157417536 GACGTAGTGAGTGTCAACC 58 157417558 157417578 CCAACAAGAGCAAGTGTACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx1 ENSRNOG00000001892 ENSRNOT00000002597 1 1 1 80 11 86559871 86559889 TTGTAAGTGCCTTTGCTCG 59 86559932 86560234 CTTCTGCCACATCTTTGTCC 59 NA Rattus norvegicus 81 Rn60_13_0898.1 ENSRNOG00000051247 ENSRNOT00000076275 3 1 1 60 13 84915469 84915487 CGATGAAGGAAATCGTGGG 59 84915427 84915446 ATTGTTGATGCCATGAGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498308 ENSRNOG00000032812 ENSRNOT00000048200 2 1 1 80 13 108444478 108444500 GAGTGTTGGGATTATAGACTCTC 58 108444308 108444440 TGGCTTACTTTCATGTGAGTG 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601,ENSRNOT00000010739 2 2 2 81 6 126647158 126647176 TGACAAGGAGGTGAAAGCT 59 126647217 126647837 CTTAAATACTGTCTGGAGGTGAG 58 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 3 2 2 81 7 125848025 125849366 CAACCTAGGCAACATTCTGC 60 125849406 125849428 GATAAGGACATTGTTCTTCCCTG 59 NA Rattus norvegicus 81 LOC680097 ENSRNOG00000050933 ENSRNOT00000072286 2 1 1 60 17 43821380 43821398 ATCTCCGGTCTCATCTACG 58 43821338 43821356 TCACGTTCTCCAGGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cilp2 ENSRNOG00000020622 ENSRNOT00000027990 3 1 1 80 16 21291950 21292156 CCTTGAAGAGTTAGGGAAGC 58 21292198 21292217 CAGAAGGTCACATTCTGACC 58 NA Rattus norvegicus 81 Sst ENSRNOG00000001837 ENSRNOT00000002519 2 1 1 66 11 80358409 80358427 AGACTCCGTCAGTTTCTGC 60 80358457 80359096 AGTACTTGGCCAGTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Tprkb ENSRNOG00000015818 ENSRNOT00000021211 3 1 1 104 4 117780662 117783432 AATGCCAATGTGATTGTCG 57 117783497 117783518 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 AABR07017595.1 ENSRNOG00000049577 ENSRNOT00000075409 1 1 1 99 15 29073795 29074001 AGCTCAATGGGATGAGCAG 60 29074061 29074082 GTACTGAAAGTGCAGTTGAGAG 59 NA Rattus norvegicus 81 AABR07017595.1 ENSRNOG00000049577 ENSRNOT00000075409 2 1 1 102 15 29073792 29073998 TCCAGCTCAATGGGATGAG 59 29074061 29074082 GTACTGAAAGTGCAGTTGAGAG 59 NA Rattus norvegicus 81 Tigd3 ENSRNOG00000023318 ENSRNOT00000031678 2 1 1 100 1 221251217 221251235 TGATTCTGTCAAGGCCCAG 60 221250301 221250321 TCTTCTTGGTGTTTAGCTCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdlim5 ENSRNOG00000016419 ENSRNOT00000022387 2 1 1 80 2 247933353 247985444 CAATCTCTAGTCTGAAAGATGGTG 59 247933296 247933315 TTCCATCAATGCTGAGAACC 58 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 1 2 2 97 2 189893198 189896028 TTAAGCAGAGCTTAAAGCAGC 59 189893121 189893139 TCTTCCTCCAATTGCTCCC 59 NA Rattus norvegicus 81 Olr1458 ENSRNOG00000049953 ENSRNOT00000044769 1 1 1 60 10 44774990 44775008 TACTTGCTCCTCTCACCTG 58 44775030 44775050 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033,ENSRNOT00000078532 2 2 2 80 17 67901549 67904589 AGGAATATTGGCAACAGACCT 60 67901489 67901508 TTATCTCAGAGGCTGACACG 59 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033,ENSRNOT00000078532 3 2 2 101 17 67901547 67904586 AATATTGGCAACAGACCTGC 59 67901465 67901483 ACAGGTCTTCCTGGTTGTC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083289 3 1 8 108 3 100789004 100815563 ACTTTCATCCGGGATTCCA 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Arl9 ENSRNOG00000029628 ENSRNOT00000044441 1 1 1 80 14 33440893 33440913 CCAAGAAATACCTTCATCAGC 57 33437258 33440853 CTTCAAGATCCTGTTTGTTGG 58 NA Rattus norvegicus 81 Spata1 ENSRNOG00000015678 ENSRNOT00000021063 2 1 1 80 2 252336190 252341273 ATCACGAAGAAGCTGAGGA 58 252336128 252336148 CTGACTCTTCCAATGATCCTG 58 NA Rattus norvegicus 81 AABR07017783.2 ENSRNOG00000047797 ENSRNOT00000073618 3 1 1 62 15 31057682 31057798 GGGATAAACTTTCTCCTGAGAG 58 31057818 31057839 GACATGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Leprot ENSRNOG00000050849 ENSRNOT00000007859 3 1 1 85 5 120498935 120503461 GGCGTTAAAGCTCTTGTGG 60 120503510 120503528 CCATAGTCCTCCAAGGCAC 60 NA Rattus norvegicus 81 Mmp14 ENSRNOG00000010947 ENSRNOT00000075610 3 1 1 80 15 33080264 33080283 TTTACCAGTGGATGGACACC 60 33080323 33081150 ACTTGCTTCCATAAAGTTGCTG 60 NA Rattus norvegicus 81 Gnb2 ENSRNOG00000001409 ENSRNOT00000001911 1 1 1 81 12 22232585 22232607 TGCTCCATCTATAGTCTCAAGAC 59 22232647 22232760 AGGAGAGGTACCCAGTATGG 60 NA Rattus norvegicus 81 Zfp365 ENSRNOG00000000638 ENSRNOT00000057992 3 1 1 85 20 22063448 22063466 GTGGCTGTGGAAATGATCG 59 22063512 22075306 GTGACAACTTCTTCCTCTTTCC 59 NA Rattus norvegicus 81 Mmp7 ENSRNOG00000010507 ENSRNOT00000014041 1 1 1 80 8 5896747 5896765 CCACTGAACTTCAAGAGGG 58 5896808 5897324 GAAGTTGTCTCCGTGATCTC 58 NA Rattus norvegicus 81 Olr693 ENSRNOG00000006408 ENSRNOT00000008384 2 1 1 60 3 78105498 78105517 TGTGCTACCATTGTTGAACC 59 78105457 78105476 CTTCTGCATTCCTCAAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049184.1 ENSRNOG00000046140 ENSRNOT00000071169 3 1 1 99 5 108935617 108935638 TGGTGATAATCTAGTTGCTCTC 58 108935697 108935755 AGTGTAGTAGGCGTAATGGT 58 NA Rattus norvegicus 81 Alkbh4 ENSRNOG00000001428 ENSRNOT00000001939 2 1 1 94 12 23569659 23570539 GGAGGAAGCAGGACTATGG 59 23569583 23569601 TACCTTCTGGCTAAAGCCA 58 NA Rattus norvegicus 81 Eef2 ENSRNOG00000020266 ENSRNOT00000047450 1 1 1 80 7 11403666 11403771 CCGCCATGGGTATTAAGAG 58 11403604 11403622 CTTTGTCAGATGTTGGCAC 57 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000085699,ENSRNOT00000088679 3 3 5 60 9 81666425 81666444 TTTGGACAAGTGCTGTACCT 60 81666466 81666485 AGGTTGTGGTAAGATGGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051266.1 ENSRNOG00000050908 ENSRNOT00000072025 2 1 1 89 3 4404473 4404491 TCTCAGAAGCCAGGAATGG 59 4401748 4402250 ACATCTGTCCTAGTGGGTG 58 NA Rattus norvegicus 81 Lrg1 ENSRNOG00000049918 ENSRNOT00000074993 3 1 1 62 9 10952412 10952431 GACAAACATAGAGGAGCAGC 59 10952456 10953417 CAGGAGGAACAGGGTTCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Gpt ENSRNOG00000033915 ENSRNOT00000050556 2 1 1 80 7 117761625 117761717 CATTTCCGGATGACCATTCTG 60 117761758 117761777 GAACTTGGCATGGAAGTGAC 60 NA Rattus norvegicus 81 Rgs10 ENSRNOG00000042592 ENSRNOT00000027375 1 1 1 80 1 199794539 199807647 ACAAGAAGCAGATGCAGGA 59 199794477 199794497 CCACATTGACTTGTGAAGAGG 59 NA Rattus norvegicus 81 Cdh11 ENSRNOG00000013481 ENSRNOT00000018535 2 1 1 80 19 2534215 2534238 CCAAGATTTATCTTCAGTCTACCC 59 2534275 2546142 TGCAGTGTTATCTCTGTTGTC 58 NA Rattus norvegicus 81 Asic5 ENSRNOG00000011842 ENSRNOT00000016039 2 1 1 80 2 180947027 180947048 TCCAAAGCAAGAACAAAGTGAG 60 180947089 180949238 TGTCCGTGAATTCCTCCTG 59 NA Rattus norvegicus 81 Epo ENSRNOG00000001412 ENSRNOT00000001914 1 1 1 80 12 22276507 22276528 CAGCTTCATATAGACAAAGCCA 59 22276569 22277344 CAATTCCTTCTGAGCTCCC 58 NA Rattus norvegicus 81 Epo ENSRNOG00000001412 ENSRNOT00000001914 2 1 1 80 12 22276513 22276535 CATATAGACAAAGCCATCAGTGG 59 22276573 22277350 CGACATCAATTCCTTCTGAGC 60 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 2 2 2 80 1 198411418 198411930 ATCTGCACAGTTCTGTGGT 59 198411973 198411992 AGTAGATTCGAAGCACAGGG 60 NA Rattus norvegicus 81 Srms ENSRNOG00000013003 ENSRNOT00000017668 3 1 1 93 3 176710519 176710792 CTATGAGGGAATGACCAACCA 60 176710446 176710464 CATGTAGACCTCTGCTGGG 60 NA Rattus norvegicus 81 Emc4 ENSRNOG00000005719 ENSRNOT00000007612 2 1 1 80 3 103853721 103853740 TTCCCTACCATGATGGTGTG 60 103853472 103853679 CAGCATCTTGAAAGTGGCTG 60 NA Rattus norvegicus 81 Tex261 ENSRNOG00000013712 ENSRNOT00000065847 2 1 1 80 4 115449471 115450234 GAATATTATCCTTTCTCTGAGGTCC 59 115449415 115449433 GAGTGACACGAAGAAAGCA 58 NA Rattus norvegicus 81 Ces2e ENSRNOG00000011635 ENSRNOT00000015724 2 1 1 80 19 93613 93633 GTCTGAAGACTGCCTATACCT 59 93675 94326 ATCCATACCATCACAGGCA 59 NA Rattus norvegicus 81 Prkaa2 ENSRNOG00000007706 ENSRNOT00000010680 1 1 1 80 5 124591777 124593407 AAGATAGCTGACTTCGGACTC 59 124591717 124591736 TGCATAATTTGGCGATCCAC 59 NA Rattus norvegicus 81 Bcor ENSRNOG00000034240 ENSRNOT00000041003 1 1 1 80 X 11673332 11673352 GAGAAGAAGCCAAAGTCAGTC 59 11673391 11678905 TCCAGTACTACAGTCACATCTC 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365,ENSRNOT00000086473 3 2 2 81 4 83832919 83833831 CACAAGGATACTTAAGTCCAGAG 58 83833871 83833890 TTATGCTGGATGACTTGCTG 58 NA Rattus norvegicus 81 Mc2r ENSRNOG00000016681 ENSRNOT00000022347 3 1 1 152 18 64168206 64177615 CAGAAACTGGATCCTTCCG 58 64168072 64168090 TCTTGCTGTGTTGTTGGTG 59 NA InUTR Rattus norvegicus 81 Mrgprd ENSRNOG00000013448 ENSRNOT00000017958 2 1 1 60 1 218488511 218488532 CTTGTCTTCCTTACCTGTTCTC 59 218488551 218488571 CCACCCAGTAGAGTAAGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9b2 ENSRNOG00000023404 ENSRNOT00000031425 3 1 1 81 2 240496692 240500149 CGGAGTGATAACTAATGGTACC 58 240500191 240500209 TCCAGGAAGACATTCAGGG 59 NA Rattus norvegicus 81 LOC680964 ENSRNOG00000047566 ENSRNOT00000071058 3 1 1 61 4 36755740 36755759 ATTAAAGGGAAGAGTGGAGC 57 36755698 36755716 TCTGTAGTTTGCTGGTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 3 1 1 74 6 126623038 126623057 AGAACTGAGTGACTCTTGCA 59 126623094 126623501 ATTCTCCATGCTCTGTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Comtd1 ENSRNOG00000013968 ENSRNOT00000018897 1 1 1 80 15 2632587 2632750 AGACTTTGGATGAGCTCCTG 60 2632792 2632811 TACAGTTCTCCTTGTCTGCG 60 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 2 1 1 129 1 80141722 80141740 TGTTCTACTTGGGCATCCG 60 80141832 80158292 ATTTCCACCCAGTGGTACAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 MGC94199 ENSRNOG00000026672 ENSRNOT00000037547 1 1 1 82 5 24159478 24159497 TGACTTCCAGATAGTGAGCT 58 24159541 24164043 ATTCTGGCATGTTGTTTCTG 57 NA Rattus norvegicus 81 Eif3l ENSRNOG00000011020 ENSRNOT00000014817 3 1 1 88 7 120328691 120330515 CATTGATAAGGACATGATCCAC 57 120330563 120330582 CTTCAAACTTGTGGATCTGC 57 NA Rattus norvegicus 81 Polr2j ENSRNOG00000001430 ENSRNOT00000001941 2 1 1 85 12 23588300 23590061 GAACATCATTAAATCGCAGCTG 59 23588236 23588254 TGATCTTGTGCTCCAAGGG 60 NA Rattus norvegicus 81 Mgat4b ENSRNOG00000003235 ENSRNOT00000004323 3 1 1 80 10 35733568 35733587 AACAGAACCTCGATTACTGC 58 35733630 35733821 CAATGTCATCCTCCAGCTG 58 NA Rattus norvegicus 81 Glrb ENSRNOG00000010199 ENSRNOT00000014170 2 1 1 80 2 179771432 179776750 CTTTGCAGGTTGGTGAGAC 59 179771370 179771390 CAACAATGCTGAAGTCATTGG 59 NA Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000012296 2 1 2 94 6 127329919 127329937 CTTGGATCTGCATTGGGAG 58 127329995 127331862 GCAGTCTTGACTCCAATGG 59 NA Rattus norvegicus 81 Racgap1 ENSRNOG00000049033 ENSRNOT00000071885 2 1 1 80 7 141292873 141292892 ACGATTGATGAATCTGGCTC 58 141291009 141292832 CAAAGAAGAATCCCAGTCCAG 59 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178,ENSRNOT00000021189 3 2 2 80 3 11857235 11857253 GATATCAACAAGCGCCGAG 59 11856077 11857192 AGAGTGGACAGACTTCTCAG 59 NA Rattus norvegicus 81 Cks1b ENSRNOG00000042561 ENSRNOT00000055533 1 1 1 80 2 188742564 188742583 TGAATGGAGAAATCTCGGTG 58 188741939 188742523 AGTAAGATGTGAGGTTCTGGT 59 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604,ENSRNOT00000083665 2 2 2 80 6 123404413 123404435 CTCAGTGAGACATAATTTGTCCC 59 123356249 123404376 GATCCTTTCCCAATACTCTGAC 58 NA Rattus norvegicus 81 Rnf183 ENSRNOG00000014861 ENSRNOT00000019924 3 1 1 60 5 78284960 78284978 CCGGATCTTTGCCTATCTG 58 78284918 78284936 GGAGAAGATGAGAAGCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgbl1 ENSRNOG00000004516 ENSRNOT00000006264 2 1 1 80 15 110371870 110371891 ATATGACCGAAGAACAAAGCAG 59 110371930 110376967 CACAATGACAAGAACCCTTCC 60 NA Rattus norvegicus 81 LOC100360647 ENSRNOG00000020982 ENSRNOT00000028481 1 1 1 118 1 221420833 221420851 GATCAAGTCGTGCTTCTGG 59 221420933 221421444 TGAACTTTACCTCCCAGCA 59 NA Rattus norvegicus 81 LOC100361067 ENSRNOG00000022652 ENSRNOT00000011446 1 1 1 60 10 65835876 65835897 GTTGAATATGCTATGAAGGCTG 58 65835837 65835860 CTTTACATCTGATCCCAATAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab2b ENSRNOG00000012488 ENSRNOT00000060467 1 1 1 80 15 28684798 28685014 ACATCACAAGACGTGAAACC 59 28684737 28684755 TAACCATGTTGGAGCTGGA 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 1 2 2 92 16 20888663 20888681 CAAGCATGCACTTACCGTG 60 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 Ac1576 ENSRNOG00000058372 ENSRNOT00000078646 1 1 1 84 10 71343970 71344837 AAGAAACTAATGAGGCGCG 59 71343904 71343922 TCATCACACTGAAGGGTCC 59 NA Rattus norvegicus 81 Mrgprb5 ENSRNOG00000022703 ENSRNOT00000029958 3 1 1 60 1 103545517 103545538 TCCTGTGACCAGATTCTATGTG 60 103545557 103545577 ACCAAAGAATGTGAAGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndnf ENSRNOG00000006857 ENSRNOT00000009094 2 1 1 60 4 96563792 96563810 TCTACGGTTTGCTCCAGTC 59 96563828 96563852 CATACAAGAGTGAATAAAGAGGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000060179,ENSRNOT00000080114 3 3 3 80 14 22107566 22108807 CCAAATCTGGAACAACTTGGA 59 22108849 22108867 CATCCCGCTTACACTTCTC 58 NA Rattus norvegicus 81 Bnipl ENSRNOG00000021116 ENSRNOT00000028671 3 1 1 80 2 196419542 196419561 TTGCTTCCTGCTATCTACCC 59 196419012 196419503 TTCCCACCATATACCTGAATAGG 59 NA Rattus norvegicus 81 Alk ENSRNOG00000008683 ENSRNOT00000011630 2 1 1 80 6 23172983 23174348 ATCATGATTGTGTACCGCC 58 23174392 23174410 GCTCAGCTTATACTCAGGG 57 NA Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 3 2 2 80 1 260896733 260896752 GCTGAACGGTATCAAATCCA 58 260896273 260896693 TGGTTGTTACTCAGGTCTATCC 59 NA Rattus norvegicus 81 Slc39a12 ENSRNOG00000025639 ENSRNOT00000044313 3 1 1 80 17 81510955 81512978 AATTCCACATGAAATGGGAGAC 59 81513016 81513037 AGGAAATTCATTAGGATGGCAG 59 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 3 2 2 81 7 124001736 124004078 GCCAAACAGAATTTGTATGACC 59 124001676 124001694 GGGCTGCAAACTTCATCTG 60 NA Rattus norvegicus 81 Cmtm3 ENSRNOG00000010691 ENSRNOT00000014234 2 1 1 256 19 838012 838033 GAAATAGAGAAGACAGACTGGA 57 834879 837530 AATGAATGAAAGGCCCGAC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Gmip ENSRNOG00000027257 ENSRNOT00000039607 3 1 1 80 16 21360436 21360454 GAGTATGCCAAAGCATGGA 58 21360290 21360393 AAACTCGAGCTCATAGTTGG 58 NA Rattus norvegicus 81 AABR07001888.1 ENSRNOG00000060716 ENSRNOT00000071177 2 1 1 82 1 61220188 61220206 CCCTTTCTCCTCATGAGCC 60 61220246 61220273 CTAGAGTCTTTGTGAAACCTATTCC 59 NA Rattus norvegicus 81 RGD1565617 ENSRNOG00000047836 ENSRNOT00000043673 1 1 1 60 3 19320489 19320507 TGGTACCAACAGAAACCAG 57 19320447 19320471 CTAAGTTGGATCCTTCATAGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magec2 ENSRNOG00000026265 ENSRNOT00000033723 1 1 1 144 X 145359798 145360511 CTGGAGTTCATCAGGATCCT 59 145360754 145360772 TACACCTTCTTCCAGGCTG 59 NA InUTR Rattus norvegicus 81 Nyx ENSRNOG00000009646 ENSRNOT00000013382 2 1 1 95 X 10199289 10218069 CTGCTTCTTTATGCGGTGG 59 10199212 10199230 CACGTTACTGCAAGTGCAG 60 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 2 2 2 88 7 119144993 119154125 GAGTACGAGGTGTCTGCTG 60 119144923 119144941 TGGTCTTCGTCCTTGATCC 59 NA Rattus norvegicus 81 Potec ENSRNOG00000016992 ENSRNOT00000052342 2 1 1 80 17 89602726 89602745 TGATTGAATTGCAAGACCCT 58 89586174 89602686 CTAGTTCAGATTCTGATCTGCA 58 NA Rattus norvegicus 81 Jak1 ENSRNOG00000011157 ENSRNOT00000064542 2 1 1 80 5 119989426 119989447 AACTATGATCCCAACCAGAGAC 60 119989258 119989386 AATGTCTGGATTCTGCTCCT 59 NA Rattus norvegicus 81 Zfp319 ENSRNOG00000013460 ENSRNOT00000017971 3 1 1 81 19 10119444 10119463 ATGGAGCCGGAATAAAGAGG 60 10119506 10121256 TAATCGATTCTGCTCCAGGG 59 NA InUTR Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 1 2 2 80 20 28064584 28064603 ATGAGGACAATGGAAATGGG 58 28064643 28067794 CTTTCTCACTCTGGGATTTCTG 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 3 2 2 80 20 28046426 28047182 GGTTCAGAAATTGCCTGTCC 60 28047222 28047243 TCACTGTAGTCTTCAAGTTCCT 59 NA Rattus norvegicus 81 RGD1563293 ENSRNOG00000038076 ENSRNOT00000057933 1 1 1 94 13 93973786 93973805 CATCTGAACACAGAGGAGGA 59 93973861 93974198 CTTGAACACCTTGAGGAAGC 59 NA Rattus norvegicus 81 Lsm5 ENSRNOG00000042126 ENSRNOT00000065625 1 1 1 105 4 87017931 87017951 CTTGTGGACAAGTGTATAGGA 57 87017598 87017867 CCAACACCATATTGACAAAGTC 58 NA Rattus norvegicus 81 Ing3 ENSRNOG00000005496 ENSRNOT00000007476 1 1 1 80 4 49021432 49033160 TTATGATTTGGTAGATCGCCAC 59 49033200 49033219 GCATTATCAGCTTCCAGCTC 59 NA Rattus norvegicus 81 Gbp4 ENSRNOG00000028768 ENSRNOT00000022648 1 1 1 80 2 248253586 248253794 CAGCTGCACTATGTGACTG 59 248253835 248253856 ACTAGAGTCCTCCACTTTATCC 59 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 3 2 2 81 X 124895863 124895881 CCAGGTATTGAACCATGGC 59 124895923 124896427 TTTCTATGTGTTCATGGCATCG 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 3 3 8 82 6 128053948 128053968 TTAAGAAAGTCTTCTCCCAGC 58 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 Olr1592 ENSRNOG00000003518 ENSRNOT00000004670 2 1 1 60 13 92209709 92209727 CAGCGATGTCCATTGACAG 59 92209667 92209686 ATGATGGTTGGGTAACGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr215 ENSRNOG00000050698 ENSRNOT00000036261 1 1 1 60 1 170888083 170888101 TGCTCTTCCCATCTGACTG 59 170888121 170888143 GGACATACATAACAATAGCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 1 2 2 126 12 22732233 22732378 GAGGAGCAGAACCTGAGTG 60 22732467 22732486 AGCTTACACAGGTATACGGG 59 NA Rattus norvegicus 81 Ccin ENSRNOG00000014831 ENSRNOT00000019887 2 1 1 60 5 59453897 59453915 CCAACAAGTCAACCACCTC 59 59453939 59453957 TGGGATACATCCAAGGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccin ENSRNOG00000014831 ENSRNOT00000019887 3 1 1 60 5 59454038 59454057 ACACCATCAACCCTAATGCT 59 59454080 59454098 GCAAGGGTCTTCCATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gltscr2 ENSRNOG00000013023 ENSRNOT00000017555 3 1 1 80 1 77840258 77840627 TCTGGAACCCAAACAATCCT 59 77840197 77840216 CACCTTTCTTCTTGGTCTGC 59 NA Rattus norvegicus 81 RGD1308139 ENSRNOG00000018550 ENSRNOT00000025553 2 1 1 80 10 59640795 59640815 CATAGTAGGCTAGGTGTTCCC 60 59640855 59641876 CCATAAACCACCTGACTTCCT 60 NA Rattus norvegicus 81 Notch1 ENSRNOG00000019322 ENSRNOT00000026212 3 1 1 80 3 3927364 3927383 AACCCATGTCAGAATGATGC 59 3926988 3927321 TACACCCTCATAACCTGGC 59 NA Rattus norvegicus 81 Rn60_10_0694.1 ENSRNOG00000057272 ENSRNOT00000087601 2 1 1 60 10 69732707 69732728 CTGGAAGTCCAATATGAAGGTG 59 69732668 69732686 AAGACATCCATCTGCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 3 2 2 84 2 208398701 208398719 TCCTCATCAAGAGCTGCAG 60 208398122 208398406 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000013291,ENSRNOT00000024624 3 2 2 80 16 7096437 7096533 GATGAAGCTCAATGTAGAAGAGG 59 7096570 7096591 AATACGATAAGCAGAGGAGGTG 60 NA Rattus norvegicus 81 LOC291543 ENSRNOG00000023960 ENSRNOT00000039569 3 1 1 80 18 60835514 60835552 AGGCTGAGAATTTCAAGCTG 59 60835453 60835471 CCCATTTGATGTTAGCGGG 59 NA Rattus norvegicus 81 Slc27a5 ENSRNOG00000019626 ENSRNOT00000026575 2 1 1 80 1 65577322 65577832 TGATTGTGGATCCAGACCTC 59 65577872 65577893 GGTAGAAGCATCGAATGTTCTC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 2 2 2 81 1 100229674 100229692 CGATACCATGAGCTGTTGC 59 100229535 100229629 GGGTCAAGAAGTCTGTCCA 59 NA Rattus norvegicus 81 AABR07065406.1 ENSRNOG00000005718 ENSRNOT00000007522 3 1 1 81 6 125864339 125864357 AAAGACTGAAGGCCAAGAG 57 125864402 125864421 TTAAGAGTCTACCAGGCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Akap14 ENSRNOG00000006899 ENSRNOT00000009123 3 1 1 81 X 123783572 123783592 GAGGATGAATGAGATAGCTCG 58 123783420 123783529 GGGATTTCTGGCTTCTTCC 58 NA Rattus norvegicus 81 Olr1642 ENSRNOG00000047738 ENSRNOT00000060437 2 1 1 60 15 28852719 28852739 ACTGTTGTCACTCCATTACTG 58 28852679 28852697 CCTTCACTTCCTGGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprc6a ENSRNOG00000000401 ENSRNOT00000000451 3 1 1 80 20 32608984 32609565 CTACAGTAATGAGACAGACATGG 59 32608926 32608944 CACATCGTGCTCCTTACTG 58 NA Rattus norvegicus 81 Gabra4 ENSRNOG00000002336 ENSRNOT00000003191 2 1 1 80 14 39177591 39177613 CAGTGATCCTTTCTCAAGTTTCC 60 39177648 39185952 GGACTGTGGTTATTCCAAATACAG 60 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 1 2 2 83 1 198089474 198089492 TTGTGTCTGCTGACTCTCG 60 198089539 198091662 TTCTCGATCGCTCTTCCTG 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 1 2 2 87 17 82080659 82080677 CTTATGTGGGACATCGGTG 58 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Olr684 ENSRNOG00000030991 ENSRNOT00000042021 1 1 1 60 3 77985058 77985076 CGCTCACCTATCTTGTGAC 58 77985100 77985118 CTGGCAATCACTGTCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usmg5 ENSRNOG00000020296 ENSRNOT00000027496 2 1 1 82 1 266862810 266862829 AAAGTGATGGCCAATTCCAG 59 266862660 266862769 CAGGACACAATTCATTCTACCTG 60 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 2 2 2 80 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384458 148384563 CATGATCTCCTTCTCATCGGA 59 NA Rattus norvegicus 81 Ltb4r2 ENSRNOG00000020382 ENSRNOT00000027619 2 1 1 60 15 34447701 34447721 CCTTGGCTTTCTTTAGTTCCA 59 34447742 34447761 AAATCACCCGCAGTAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000044788,ENSRNOT00000079633 1 2 2 107 1 101512304 101512767 GTAGAAAGGTGCACTTCTCTG 59 101512217 101512235 GATCTCGTGCAAACTGCTC 59 NA Rattus norvegicus 81 Mcm9 ENSRNOG00000003281 ENSRNOT00000004499 3 1 1 80 20 34915340 34915358 GGTCATGGATGAGGATGCT 59 34912442 34915296 TCATTCCTCCCTGCAAAGG 60 NA Rattus norvegicus 81 LOC100912505 ENSRNOG00000052339 ENSRNOT00000084063 1 1 1 60 3 73676749 73676770 CTACTTGTTCTTGTGTCCTACC 59 73676710 73676728 CAGCAGAGTTCATCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde4a ENSRNOG00000020828 ENSRNOT00000061100 1 1 1 80 8 22223154 22223172 GGAAGCTTGAACACCAACG 60 22223214 22225220 CAAGTTCTCCAGTTCTTGTGC 60 NA Rattus norvegicus 81 Traf7 ENSRNOG00000003131 ENSRNOT00000004192 3 1 1 80 10 13877665 13877683 TCCTCGATGAGAACCAGAG 58 13877411 13877623 ACAGCTCATCATTCAACATGG 59 NA Rattus norvegicus 81 AABR07050391.2 ENSRNOG00000058695 ENSRNOT00000071103 1 1 1 60 5 163612823 163612841 TGTGTATGCTCACTTCCCT 58 163612865 163612883 GATTTCAACCAGAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r69 ENSRNOG00000040210 ENSRNOT00000039900 3 1 1 81 14 1016638 1018826 GAACATCAGTTCCTTCCTCC 58 1018869 1018888 CAGTCTGCTGTTTGTTTCTG 58 NA Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 3 2 2 80 4 160536059 160536078 ATCGTCCTGTTGATCATCCT 59 160535755 160536017 ATTCTCGTTCACCTTGTCCA 59 NA Rattus norvegicus 81 LOC103690304 ENSRNOG00000053992 ENSRNOT00000082085 3 1 1 60 15 27652844 27652868 GACTAGGAGACTTTGTTGTATTCTG 59 27652808 27652828 GTAGCCAAGGAATCCAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763,ENSRNOT00000003021 2 2 3 84 14 34557030 34557982 CAGGAGAAATAAGAAAGGTGTGG 60 34556753 34556771 GCGCTCTTCACCATAAAGC 60 NA Rattus norvegicus 81 Tbx2 ENSRNOG00000003517 ENSRNOT00000004698 1 1 1 127 10 73284773 73285903 CCTACCAGAATGACAAGATTACAC 59 73286085 73286103 ATACAAACGGAGAGTGGGC 60 NA Rattus norvegicus 81 Mir196c ENSRNOG00000035510 ENSRNOT00000053633 2 1 1 60 10 84113592 84113610 TAGTTTCGTGTTGTTGGGC 59 84113633 84113652 AGTGAATCAGGTGGTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 1 2 2 80 4 162182046 162183080 TCAGTATAACAACTTGGTTCCC 58 162181987 162182006 CTGCTACTGCTGATGTTGAG 59 NA Rattus norvegicus 81 Sf3a2 ENSRNOG00000019349 ENSRNOT00000026202 1 1 1 80 7 11781134 11781263 CATCGACATCAATAAGGACCC 59 11781074 11781093 TTATGCAGAGTCAAGCAGAG 58 NA Rattus norvegicus 81 Slc35f5 ENSRNOG00000003403 ENSRNOT00000004581 1 1 1 80 13 41916325 41916343 TCCTGTGATGGTAGGAGTC 58 41916385 41917513 TCACTGTCTTCTGAAACTCTC 57 NA Rattus norvegicus 81 Pgm1 ENSRNOG00000009889 ENSRNOT00000013785 1 1 1 80 5 118776129 118776148 GGTAGACCTCAGTGTTCTGG 60 118776191 118777493 GAGTCCACGATCTCCACTG 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052,ENSRNOT00000075041 1 2 2 82 10 109965700 109965818 CTGGACGGAAATGGTTCTG 59 109965636 109965654 AGAGAAGGTGGAAAGCAGG 59 NA Rattus norvegicus 81 Bid ENSRNOG00000012439 ENSRNOT00000016776 1 1 1 81 4 153450536 153451668 ACTCTGAGGTCAGCAATGG 59 153450473 153450492 TCATTGTTTCGGAGAAAGCC 59 NA Rattus norvegicus 81 Bid ENSRNOG00000012439 ENSRNOT00000016776 2 1 1 82 4 153446345 153450344 GAATAGAGCCAGATTCTGAAAGTC 59 153446286 153446304 GTCCAGTTCATCACCTGCT 60 NA Rattus norvegicus 81 AABR07051678.1 ENSRNOG00000048541 ENSRNOT00000074445 1 1 1 84 3 19174316 19174334 AGAAGGTCACCATCACCTG 59 19174382 19174411 ATCCAGGGTTTAGGGTTCG 59 NA Rattus norvegicus 81 Zfp830 ENSRNOG00000007578 ENSRNOT00000009970 1 1 1 60 10 70119052 70119072 GATCAGATGGACAAAGAGTGG 59 70119093 70119112 AGATAGTGTTGACTTGCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 2 2 2 86 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404204 108417990 TTGATCATTCCTCCCTGCT 58 NA Rattus norvegicus 81 Vom1r51 ENSRNOG00000047370 ENSRNOT00000029114 1 1 1 60 1 66873092 66873111 ACACAAACACAAACAACGAG 58 66873051 66873069 GGCAGACTTTGAGGATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a17 ENSRNOG00000018920 ENSRNOT00000025758 3 1 1 88 7 122544057 122547062 ATTCTGAGGTTTGGACGTC 58 122543987 122544005 ACTCGTTGGTGAAGAAGAG 57 NA Rattus norvegicus 81 Olr502 ENSRNOG00000052035 ENSRNOT00000083628 1 1 1 60 3 73755337 73755356 AATCAAGGCTACAAACACCC 59 73755296 73755317 CCAAGATCAGTAGTAGCAAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pter ENSRNOG00000017328 ENSRNOT00000023446 1 1 1 80 17 80290335 80290356 ATTCCAGATCATCCGAGTACTG 60 80290394 80304577 AATATAGACCTGTCAAGGTGGG 59 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 2 2 2 80 2 198007325 198007494 CTACAAGCTCCTTAAGAAGGC 59 198007536 198007554 ATCTGTCGGATGGAGATGG 59 NA Rattus norvegicus 81 Olr668 ENSRNOG00000055117 ENSRNOT00000080807 2 1 1 60 3 77661435 77661454 GGAGACTCTGTGCAATTCTG 59 77661394 77661414 ATGATAGAATGCAAGAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn8 ENSRNOG00000001571 ENSRNOT00000002138 3 1 1 60 11 28527722 28527742 TTTGTGGATGAACTGCATGAG 59 28527682 28527702 GGAGTCATAGACCTTACACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 2 2 2 81 2 259381640 259382669 GAGACCTACTGCACGACAG 60 259381577 259381597 GATACTCGTTACACTCGTCCT 59 NA Rattus norvegicus 81 Aqr ENSRNOG00000008912 ENSRNOT00000011952 3 1 1 80 3 105610142 105612791 TTCTAGAATTGCTGGTGTCTC 58 105610082 105610103 CAGTAGGATACAAAGGCATCTG 59 NA Rattus norvegicus 81 RT1-Ha ENSRNOG00000026669 ENSRNOT00000086964 3 1 1 176 20 3880737 3880847 TCACTGGGAAATGCAGGAG 60 3880986 3881005 ACCTCCACAGTTACTCACAG 59 NA Rattus norvegicus 81 Fbxo46 ENSRNOG00000008815 ENSRNOT00000012082 2 1 1 60 1 80042753 80042771 TCTCTACAGCAGCTTCAGG 59 80042793 80042813 TTGATAACATACCACGTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563072 ENSRNOG00000048060 ENSRNOT00000075558 3 1 1 60 5 144634225 144634245 TCCAACCAGACAGTAATTCCA 59 144634265 144634285 TGCCAGTTCTTATTAGCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017769.1 ENSRNOG00000046681 ENSRNOT00000071566 1 1 1 91 15 30862520 30862684 CTAATGCTCCGAAGGAGCA 60 30862739 30862757 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Snrnp200 ENSRNOG00000012157 ENSRNOT00000043895 3 1 1 80 3 119655507 119655870 GAACAGTGCAAGAACTTGG 57 119655913 119655932 GTCAACTCTAGTCATGCCTG 58 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000087669,ENSRNOT00000080820 2 3 4 80 1 63845176 63845417 TTCATCTCAGGACCATCGAG 59 63845460 63845478 CAGTGTGAGGCTCATTCCA 60 NA Rattus norvegicus 81 Clrn1 ENSRNOG00000042477 ENSRNOT00000064833 2 1 1 85 2 149067475 149088501 CCGGTTCTCATTCTTCCCA 59 149067408 149067429 CGACAAGAATCATGGAGAAGAG 59 NA Rattus norvegicus 81 Clrn1 ENSRNOG00000042477 ENSRNOT00000064833 3 1 1 86 2 149067476 149088502 TCCGGTTCTCATTCTTCCC 59 149067408 149067429 CGACAAGAATCATGGAGAAGAG 59 NA Rattus norvegicus 81 LOC688320 ENSRNOG00000046260 ENSRNOT00000072947 2 1 1 80 10 109912729 109912841 TATCCCAGATGGTAGCCAG 58 109912667 109912686 CGTGAGCAACTATTCTGGAG 59 NA Rattus norvegicus 81 Fam167b ENSRNOG00000049425 ENSRNOT00000074172 1 1 1 121 5 147783888 147783906 CATGGATTCAGCGCTTGAG 59 147783029 147783047 CTTGGTCCACTTTCAGTCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC691215 ENSRNOG00000028189 ENSRNOT00000029193 3 1 1 80 X 125314967 125314985 TAAGGACGATTCTGTGGGA 58 125315028 125315939 TTACTGATTGCCCTTACGTC 58 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 1 2 2 80 1 72897676 72897697 GATGGAGAAATTGAAGCAACAG 58 72897838 72899490 CCCTTTCGGAATTTCTGGG 59 NA Rattus norvegicus 81 Tas2r121 ENSRNOG00000005717 ENSRNOT00000007521 3 1 1 60 4 166868789 166868812 CTCCTTCATCCTGTTAATCTTCTC 59 166868752 166868772 GGAACTGAGATGCATCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 3 2 2 80 2 256685093 256686316 TTCTACCGACTTGGCTCTC 59 256686360 256686378 CCGTCCACATTCATATGGG 58 NA Rattus norvegicus 81 Gtf2h4 ENSRNOG00000000831 ENSRNOT00000083556 2 1 1 80 20 3587444 3587586 TGATGCTCAAACAGACTCC 58 3587630 3587648 GAAGTCTGTCCCTTTCCAG 58 NA Rattus norvegicus 81 Nap1l3 ENSRNOG00000029087 ENSRNOT00000049956 3 1 1 60 X 95061415 95061436 GCAGGCTCTCAGAAATATTCAG 59 95061376 95061396 TGCCCTTAAGAACAAAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcna6 ENSRNOG00000052486 ENSRNOT00000080139 1 1 1 67 4 159280845 159280863 TAGAGGAGCAAGGAACAGC 59 159254232 159254250 TTTCCAGAGTGACCACGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1606 ENSRNOG00000006734 ENSRNOT00000008798 1 1 1 60 15 12261231 12261251 GTTCTACACTATCCTCACACC 58 12261191 12261209 ATCCTTGTTCCTCATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 3 2 2 80 6 135235585 135235715 CATATGCACAGAAACGGGA 58 135234515 135234534 CCCTAGTTTCAGGACATCCT 59 NA Rattus norvegicus 81 Micb ENSRNOG00000057645 ENSRNOT00000083211 3 1 1 89 1 79769686 79769704 TGAGAATCTGCCGAAGGAG 59 79769756 79769978 AGAGTGTATGGGCCTTTGTC 60 NA Rattus norvegicus 81 Med14 ENSRNOG00000003792 ENSRNOT00000066480 3 1 1 80 X 11058235 11062246 CAGTCTCCAGGAAATCTGC 58 11062290 11062308 AGTTGGAACAAATGACGCT 58 NA Rattus norvegicus 81 Olr1608 ENSRNOG00000012522 ENSRNOT00000016693 1 1 1 60 15 27001680 27001700 AGCATCATTGTGGTCATTGTC 59 27001640 27001659 GCAGGAAGTACATAGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adora2b ENSRNOG00000002922 ENSRNOT00000003966 1 1 1 80 10 48569939 48569957 GAGCTCCATCTTTAGCCTC 57 48569999 48584981 ACCAAACCTTTATACCTGAGC 58 NA Rattus norvegicus 81 Vps8 ENSRNOG00000001764 ENSRNOT00000029255 3 1 1 80 11 83265216 83265234 CATTATGCAGATCGGGCTC 59 83249724 83265172 CACCGTATCCTGAAAGTGC 59 NA Rattus norvegicus 81 RGD1563104 ENSRNOG00000031294 ENSRNOT00000043728 1 1 1 60 X 96530281 96530299 AGAACTCCTTGATCTGGCT 58 96530320 96530341 TTTGATGATTATGTCCTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otx1 ENSRNOG00000059469 ENSRNOT00000090664 3 1 1 87 14 106863815 106863833 AAAGACTCGCTACCCAGAC 59 106862396 106863765 CTTGAACCAAACCTGGACTC 59 NA Rattus norvegicus 81 LOC100910017 ENSRNOG00000033024 ENSRNOT00000043610 1 1 1 60 5 78392823 78392842 GCATCCGAGTACATTTGTCC 59 78392782 78392803 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910017 ENSRNOG00000033024 ENSRNOT00000043610 2 1 1 60 5 78392801 78392819 AAGCGTAATGAGGATGAGG 57 78392759 78392777 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r25 ENSRNOG00000047696 ENSRNOT00000075203 1 1 1 80 1 116872216 116872586 AGTCATGATTTAGAGCTTCACC 58 116872625 116872645 CTCATCCAGAACCACATTGTC 59 NA Rattus norvegicus 81 Atp10d ENSRNOG00000002312 ENSRNOT00000003146 1 1 1 80 14 38524703 38524722 GCTGTAGGAAATGGAGAAGG 58 38520126 38524660 CACGTCTGTTTCAATGGGA 58 NA Rattus norvegicus 81 Parp1 ENSRNOG00000003084 ENSRNOT00000004232 2 1 1 80 13 98877119 98877137 TGGACATTGTGAAAGGGAC 58 98877180 98877710 GGAAGATCCAATACCTGCTC 58 NA Rattus norvegicus 81 Pnpla5 ENSRNOG00000022296 ENSRNOT00000039228 1 1 1 80 7 124996218 124996238 GTTTCCAGATCTCTACCAGGA 59 124994739 124996176 AATAGTCAGCCACCACCTC 59 NA Rattus norvegicus 81 LOC684841 ENSRNOG00000049198 ENSRNOT00000074024 3 1 1 84 17 43791889 43791907 ACTTCAAGACCGACCTTCG 60 43791955 43791973 TCAAACAGACCCACAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554167 ENSRNOG00000030162 ENSRNOT00000043609 1 1 1 60 14 81043729 81043750 TCAGGAGATCACTAAGGTAGAG 58 81043769 81043789 GCCAAAGTCCAGAAGTTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 3 2 2 81 10 88264444 88264788 CTGGAAGAGAAAGAACGGG 58 88264381 88264402 CCTCCATCAGAACACTATTCTG 58 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 3 2 2 80 12 23607117 23607373 AATCCTTTCTGAAGGTGGCA 60 23607056 23607075 TCTTCTCCTCGAACACTCTG 59 NA Rattus norvegicus 81 Lrba ENSRNOG00000023453 ENSRNOT00000088188 2 1 1 80 2 185668002 185668021 GAGTAATGCTGTCAGTGTGG 59 185668061 185674893 GATCTACTTCCTGGTGACTCTC 60 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529 2 1 3 80 20 3980905 3981958 GAAGAACCCAACAGGTTCC 58 3982000 3982020 TTCAGCTTGTCACTAATGGAC 58 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000091362 2 1 3 60 20 3980138 3980162 TTCTTCTCTTTCCTCTATGAGACAG 60 3980180 3980198 TGAGTTCGAGAACAGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000091362 3 1 3 60 20 3979965 3979987 AGTAAAGTCTCCGGAAGTATCAG 60 3980007 3980025 GGGTCCTTCTCTTTCCGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gatsl2 ENSRNOG00000001484 ENSRNOT00000002033 1 1 1 80 12 25602982 25603818 GATGTTCTACTCCAATGGAGTG 59 25602923 25602942 AGTGAGAAAGAGAAGAAGCG 58 NA Rattus norvegicus 81 Fam151a ENSRNOG00000007799 ENSRNOT00000010288 2 1 1 80 5 126346346 126346364 GGTAGAGTGGTTGGCTCTG 60 126346405 126346861 AGGATCATGCCTTCTCTATCAG 59 NA Rattus norvegicus 81 RGD1561916 ENSRNOG00000013320 ENSRNOT00000017903 1 1 1 80 5 57887254 57887274 AACACATGGAAGACAAGTCCT 60 57886316 57887213 ACCTGTGTCCTTGTACAGTC 59 NA Rattus norvegicus 81 LOC100359986 ENSRNOG00000025536 ENSRNOT00000039731 2 1 1 60 15 52712698 52712719 CGTAATGAGGATGAGGATTCAC 59 52712659 52712678 TAACAGGCACGTAAGTTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult5a1 ENSRNOG00000015695 ENSRNOT00000051452 3 1 1 89 19 55966967 55966985 CTAGAGTCCCTGAAGGCAG 59 55957797 55966914 CATCCAGGTGGTACCTGAC 60 NA Rattus norvegicus 81 Olr834 ENSRNOG00000015646 ENSRNOT00000020943 3 1 1 60 5 59208013 59208034 TTCTCTGAGTTCATCTTGAAGG 58 59207974 59207992 GAAAGAGTAGGTGCTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910565 ENSRNOG00000033358 ENSRNOT00000051671 2 1 1 80 1 81549444 81549463 AGTCCAACCTTGTTCTATGC 58 81549104 81549401 AGATACTGAGGCTACCTCC 57 NA Rattus norvegicus 81 Mir759 ENSRNOG00000040381 ENSRNOT00000062134 1 1 1 60 15 62025507 62025528 TTAAATGCCTAAACTGGCAGAG 59 62025546 62025567 CCAGTGCAAACATTTAGATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efhd1 ENSRNOG00000015596 ENSRNOT00000021168 1 1 1 107 9 94388018 94395514 CAGCTTTCGGGAGTTTCTG 59 94395585 94395603 AGGGCGACATTGATCTCAG 60 NA Rattus norvegicus 81 Atpaf2 ENSRNOG00000003719 ENSRNOT00000004948 1 1 1 80 10 46776296 46783603 GCCAACAGAAAGGAAGAGG 59 46776067 46776086 CTGTGGTCCAGGTTTATCTC 58 NA Rattus norvegicus 81 Tmem8c ENSRNOG00000006142 ENSRNOT00000008327 1 1 1 94 3 5608938 5609326 TCTTTGAGGAATGGGATTACAC 58 5608865 5608883 CTTCTTGTTGACCTTGGGC 59 NA InUTR Rattus norvegicus 81 Mir218-2 ENSRNOG00000035481 ENSRNOT00000053604 2 1 1 60 10 20428681 20428701 TCCTTTGTGCTTGATCTAACC 58 20428722 20428741 CTTGACAGAACCATGTTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hrh4 ENSRNOG00000016887 ENSRNOT00000022744 1 1 1 80 18 4365648 4374687 TCTTCGTGGGTGTCATCTC 59 4374730 4374749 ACATGCAGATTCCACTTCCA 60 NA Rattus norvegicus 81 Nckipsd ENSRNOG00000031816 ENSRNOT00000047482 1 1 1 80 8 117608119 117608137 CTGTTATTCCGCCCTTGTC 59 117608180 117608383 GTACCCAGGTGTTCATAGTG 58 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000048328 ENSRNOT00000060380 2 1 1 91 15 31852452 31852565 TTTCTCATGAGAGTTGCCCA 59 31852619 31852637 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 3 2 2 80 2 93795276 93795888 AAAGTGAAGAGCATCATAACCC 59 93795927 93795947 CTTTATGGTGGTCGACTTTCC 59 NA Rattus norvegicus 81 Rhno1 ENSRNOG00000028517 ENSRNOT00000039086 3 1 1 92 4 161681558 161681579 CATTATGAATCTCACCAGCAGC 60 161680561 161681505 AGGTAACACCCAGGAAGTG 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796,ENSRNOT00000019245 3 2 2 80 1 114530798 114531038 ACAATGTGAAGGACTTTCTGTG 59 114531079 114531097 CAGGAGGAAACGTGATTGG 59 NA Rattus norvegicus 81 LOC691551 ENSRNOG00000028473 ENSRNOT00000039447 1 1 1 80 1 190927275 190929670 ACCTCACTGTTATCATGGTG 57 190929713 190929731 AATCTGCATCGACCATGTC 58 NA Rattus norvegicus 81 Impact ENSRNOG00000045844 ENSRNOT00000073771 1 1 1 80 18 4338566 4338585 TCCTATCACAGACCGAAGGA 60 4338627 4340333 GCAAGAACCTTCTTCACCTG 59 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 1 1 1 83 4 108301667 108301960 AAAGGATTTCTGACCCAGC 58 108302007 108302025 CCGAGTAGCAGGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 C1ql3 ENSRNOG00000017459 ENSRNOT00000023637 3 1 1 102 17 80320151 80320169 CTTCTTCACCTACCACGTC 58 80314339 80314357 ATCTTGGGCAATTGCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504,ENSRNOT00000090695 3 2 2 64 7 144065651 144066009 TGTGGAATCCTAGTGCTGG 59 144066037 144066055 ATTGGAACCTCCTGGACAC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp612 ENSRNOG00000016971 ENSRNOT00000022757 1 1 1 80 19 41565365 41565383 AGAGGAAGGAGAGGATCTG 57 41561237 41565322 GCAGTACATTCAGTCCAGAG 58 NA Rattus norvegicus 81 AABR07017892.1 ENSRNOG00000048543 ENSRNOT00000072496 1 1 1 91 15 32296161 32296325 CTAATGCTCCGAAGGAGCA 60 32296380 32296398 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 3 2 2 80 18 2081781 2081801 GTTCTTTGTGTTCTCCTCGTG 60 2081840 2083608 CACATTCTTCAATCTTCGTCCT 59 NA Rattus norvegicus 81 Olr648 ENSRNOG00000059965 ENSRNOT00000089424 2 1 1 60 3 77048295 77048314 CACCCATGTTCAATCCTCTG 59 77048336 77048355 CGTAGGGCATTCTTCATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr648 ENSRNOG00000059965 ENSRNOT00000089424 3 1 1 60 3 77047668 77047686 ACCTCTGCTACACATCCAC 59 77047709 77047728 TTCCTTTCTGCCAGTAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr852 ENSRNOG00000018362 ENSRNOT00000024724 2 1 1 60 5 69752004 69752022 CGGTGCAGATGTTTCTTGG 60 69751962 69751980 ATCATGCCTAGGAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx6 ENSRNOG00000001873 ENSRNOT00000002558 3 1 1 80 11 87441224 87441322 GTTCAACTTCTCCAGAACCA 58 87441364 87441383 CTGGAGAGTGAATCGTAGAG 57 NA Rattus norvegicus 81 Ogg1 ENSRNOG00000052140 ENSRNOT00000085766 3 1 1 128 4 145284572 145284590 ACAACATTGCTCGCATCAC 60 145284682 145286949 CTACTTCTGGACCAGCCAG 60 NA Rattus norvegicus 81 LOC500594 ENSRNOG00000023112 ENSRNOT00000031564 1 1 1 80 5 169635924 169635943 TTTATGGATGTGCAATGCCC 59 169635985 169636995 GGTGATTGTTAAGACGACCG 59 NA Rattus norvegicus 81 Marveld1 ENSRNOG00000042620 ENSRNOT00000064160 1 1 1 87 1 261391394 261392575 CCTCTAAGGTTTCCATGTTGC 59 261392624 261392642 AGTTCAGCCAATCAGGGAG 59 NA InUTR Rattus norvegicus 81 Acer3 ENSRNOG00000036866 ENSRNOT00000019987 1 1 1 80 1 163169899 163169920 CCTTGACTGTCTTCTTATTGGG 59 163167191 163169860 TCTTTCGAAAGTTCCTCAGTG 58 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 1 2 5 113 20 4043789 4043807 TAGAGATGGCTCTGCAGAC 59 4043883 4045246 GGAATACGAAATCCCTTGGG 59 NA InUTR Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 2 2 5 114 20 4043789 4043807 TAGAGATGGCTCTGCAGAC 59 4043884 4045247 TGGAATACGAAATCCCTTGG 58 NA InUTR Rattus norvegicus 81 Foxr1 ENSRNOG00000029089 ENSRNOT00000049125 3 1 1 80 8 48754979 48756225 CAACTTCACTCGAGAGCAC 59 48754917 48754938 AAACAGAGATTGTGACGAACTG 59 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867,ENSRNOT00000088697 2 2 2 80 10 94473745 94474697 ACATCACCATGTACCAACCA 59 94474738 94474758 CTGTGAAGGCTTCATCAATGG 60 NA Rattus norvegicus 81 Olr479 ENSRNOG00000049794 ENSRNOT00000012872 3 1 1 60 3 73456218 73456236 TACTTGCTGTCAGTCATGG 57 73456176 73456195 CATAGAGGAGAGGGTTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945,ENSRNOT00000083539 1 3 3 80 11 82765702 82768166 CAAGTCTCAGGCTGAATGG 58 82765640 82765660 AATCGATGAATACAGGTCCCT 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 3 2 2 80 1 84157408 84157426 CATCCTTCAAGATCCTGGC 58 84156918 84157364 CACCATAGGGACCAATGTC 58 NA Rattus norvegicus 81 LOC100912182 ENSRNOG00000031022 ENSRNOT00000048198 3 1 1 60 18 1505195 1505216 GACTTTCTGTAAGAAATGTGGC 58 1505237 1505255 GCCCTTCTTATACTGGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col23a1 ENSRNOG00000046785 ENSRNOT00000004510 3 1 1 89 10 34921622 34921640 CAGGATCTTAGATGCCCTG 57 34923288 34923991 AATCCAAGTTCACCCTTGG 58 NA Rattus norvegicus 81 Nutm1 ENSRNOG00000005111 ENSRNOT00000006876 1 1 1 80 3 103738175 103738199 CTATAGCTCCTTTGAAACTTGATCC 60 103737682 103738140 CCTTCTTTGGAATGTACACTGG 59 NA Rattus norvegicus 81 Ghdc ENSRNOG00000018906 ENSRNOT00000025590 3 1 1 80 10 88676085 88676384 AGAACACAGACATGACCAC 57 88676023 88676044 GCTTCTCTTCACTTTCTTTCTG 58 NA Rattus norvegicus 81 Comt ENSRNOG00000001889 ENSRNOT00000050269 2 1 1 80 11 86731445 86731463 AGATGAACCCTGACTACGC 59 86731504 86731834 CATTGAGGATGGTGACTTTGTC 60 NA Rattus norvegicus 81 Col9a3 ENSRNOG00000009531 ENSRNOT00000013105 1 1 1 82 3 176104719 176105324 TGGTGTAGATGGTCTGACAG 59 176106370 176106388 CTGGAGGTCCTAGACTTCC 58 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 2 2 2 80 7 142326898 142326916 CTGGTACCTGCACAATGTC 59 142326487 142326856 CCGAGATTCTTGATAGCTCCA 60 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 2 1 2 81 5 59067488 59067506 CCTTCTGCCTTCTTCTGGT 59 59067550 59067644 CGGTGCAACACAACATACTC 60 NA Rattus norvegicus 81 Lsm7 ENSRNOG00000019552 ENSRNOT00000026551 3 1 1 87 7 11724986 11725525 CAAGATGGCGGACAAAGAG 59 11725575 11725594 CTGGAACTTGACTCGAATGG 59 NA InUTR Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422,ENSRNOT00000085465 3 3 3 81 20 35260833 35260851 CGGGATGTTTACATTGCCC 59 35260440 35260793 AGTACAGATACTTCAGTGTCTCTG 60 NA Rattus norvegicus 81 Anxa10 ENSRNOG00000014339 ENSRNOT00000059724 3 1 1 80 16 29720531 29722161 AGCCTACTGTTTACAATACAGC 59 29722198 29722220 ATAAGAGTATCTCGGAAGTGTCC 59 NA Rattus norvegicus 81 Thap2 ENSRNOG00000003993 ENSRNOT00000005443 3 1 1 90 7 58357905 58357924 AACAGGACAAACTCGAAGAC 58 58354954 58355576 CCTTGACTTGAGTTTCAAGCT 59 NA Rattus norvegicus 81 Panx2 ENSRNOG00000055530 ENSRNOT00000089707 2 1 1 156 7 130043038 130049713 CCAAGAACTTCGCAGAGGA 60 130049833 130049851 AACTTGTGCTCAAACAGCG 60 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459,ENSRNOT00000016376 1 2 2 80 1 114292143 114293218 TGTACTTCCAGAGAAATGCC 58 114293261 114293279 CGAAGTCCTTTCTCCTCTC 57 NA Rattus norvegicus 81 Atp13a5 ENSRNOG00000024127 ENSRNOT00000035049 2 1 1 80 11 75012803 75012822 ACAGTAACTCCTGCTTTGAC 58 75012865 75020491 ACACTAACCGTCTGACCTC 59 NA Rattus norvegicus 81 Foxe1 ENSRNOG00000023497 ENSRNOT00000012637 1 1 1 60 5 61955425 61955443 CCAAGAAGTGGCAGAACAG 59 61955467 61955485 ATCTTGAGGAAGCAGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000016195 1 1 2 80 2 238566923 238577276 TAGGCTCCAAGGTTCTTTCC 60 238577316 238577337 TTTCACTCTGATCGATAAGTGC 59 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000016195 3 1 2 80 2 238602502 238602520 CGTGCACATCTGTGATAGC 59 238602563 238605407 ATTGAAGGTGTTGGGATCGA 60 NA Rattus norvegicus 81 Clec12b ENSRNOG00000053638 ENSRNOT00000089712 1 1 1 80 4 163145858 163146223 GAAGAAAGGGATCTCCTTCAG 58 163145798 163145816 GCTAGATGAATCCCAGGAC 57 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 3 2 2 60 2 86474439 86475032 AAGGACCTTCTGTCATTTACAG 58 86474400 86474419 GACATTCACACTCCTCTGGA 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 1 3 3 80 10 35875784 35875893 TATGGTGGAGGCTATGGAG 58 35875935 35875955 TCTTCCAAATCTATCCGAACC 58 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 3 3 3 80 10 35875783 35875892 TTATGGTGGAGGCTATGGA 57 35875934 35875954 CTTCCAAATCTATCCGAACCA 58 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 1 2 2 80 19 1037448 1038888 CCATCGACAATTCTGGACTC 59 1037387 1037407 CCACCACGATCTTGTATTCAG 59 NA Rattus norvegicus 81 Haus1 ENSRNOG00000017067 ENSRNOT00000023101 3 1 1 80 18 74145245 74145263 CCAGAACATGGACTTCCTG 58 74144835 74145202 CTGGATGAAAGTTGCTCCTC 59 NA Rattus norvegicus 81 Olr448 ENSRNOG00000009526 ENSRNOT00000012629 1 1 1 60 3 73039992 73040013 TTCTTCACTGGATTAACCTCCT 59 73039953 73039973 AGAGAAATGTCAGAAAGAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam228b ENSRNOG00000049615 ENSRNOT00000072340 1 1 1 80 6 30038826 30038844 TTCCCAAGCTCAAGAGCTC 60 30038882 30043467 CAGTATCTTCTTTAGCTAAAGCCTC 60 NA Rattus norvegicus 81 Klhl14 ENSRNOG00000015418 ENSRNOT00000020697 3 1 1 80 18 12531284 12534950 ATTTGAAAGGCTTCTCCCAC 59 12531223 12531244 TTTGGAGTATATTCCACTGGTC 58 NA Rattus norvegicus 81 Ccdc102a ENSRNOG00000025843 ENSRNOT00000030229 3 1 1 80 19 10525530 10527321 GGAGCGAGAGGATAAGCTG 60 10527362 10527383 TCGTATTTGATCTTCCATTGGC 59 NA Rattus norvegicus 81 RGD1359127 ENSRNOG00000016399 ENSRNOT00000021939 1 1 1 129 7 12256624 12256642 TAGAGCAGATCCTGGAGGA 59 12257247 12257265 TAGATCTGCTCCTGCTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Klrd1 ENSRNOG00000060246 ENSRNOT00000082064 3 1 1 134 4 163362362 163363747 TCTCATGGCAGTTTCTAGGA 58 163363989 163364008 GGTGTCGATTGAATGTTCTG 57 NA InUTR Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454,ENSRNOT00000086335 1 2 2 80 18 6026840 6026858 GCTATAGACCAACACAGCC 58 6021923 6026799 AATTTCCATATTGTCCCTGGTC 59 NA Rattus norvegicus 81 Smc1b ENSRNOG00000032570 ENSRNOT00000044883 2 1 1 80 7 125968060 125968084 GATAATCATTTCCCTGAAAGAGGAG 60 125966866 125968022 ATGCATTCATCGTGCTCTG 59 NA Rattus norvegicus 81 Cdca8 ENSRNOG00000031431 ENSRNOT00000048293 1 1 1 80 5 142931140 142932987 TTGACTACTTTGCCCTAGGA 58 142926243 142926264 TGTTTATCTCTGTGATGTCTCG 58 NA Rattus norvegicus 81 Olr1653 ENSRNOG00000018489 ENSRNOT00000024937 3 1 1 60 17 2690483 2690501 ATGCCTGTGTTCAGATGGT 59 2690525 2690543 TGGACAGACCCATAGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zar1 ENSRNOG00000026150 ENSRNOT00000030610 1 1 1 80 14 37761182 37761201 ACTATCACTGCAAAGACTGC 58 37761037 37761139 TGAAGTACACCTTGCTGGT 59 NA Rattus norvegicus 81 Mir465 ENSRNOG00000040404 ENSRNOT00000062157 3 1 1 60 X 151297417 151297436 CCCTATTTAGAACGGTGCTG 59 151297376 151297395 CTCTACTCAGAAAGGCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600,ENSRNOT00000067118 3 2 2 80 6 136414889 136415970 ATGAATGGCAATCTGTCTGC 59 136414828 136414847 GATGGCAGTCTGAACTTCCT 60 NA Rattus norvegicus 81 Ociad2 ENSRNOG00000002196 ENSRNOT00000002991 3 1 1 81 14 37443842 37444650 CCTAAAGTTGCACTGGCTG 59 37444692 37444713 AATGGAATTTACTCTGGCACAC 59 NA Rattus norvegicus 81 Kctd1 ENSRNOG00000016467 ENSRNOT00000061504 1 1 1 80 18 6473786 6473804 TCTGTAAGGCGTTCTTCCA 59 6473720 6473742 TGCCTATGGCTTTGTTCTC 58 NA Rattus norvegicus 81 Polg2 ENSRNOG00000013728 ENSRNOT00000018394 2 1 1 80 10 94976110 94976128 CTCCCACAAGGACTTCGAG 60 94974658 94976068 GACTCACAGCAAACTTTCTCC 60 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000048542 ENSRNOT00000073741 1 1 1 80 15 35264290 35264311 CTTCCATCACTACTCTGAGACC 60 35263851 35264249 CCAGAGTCACCCTTGTACG 60 NA Rattus norvegicus 81 Pld4 ENSRNOG00000028566 ENSRNOT00000029017 3 1 1 80 6 137330102 137330121 CCATGTTCGCTTATCTGAGG 59 137330161 137330269 CAATGAAGACTTTCACATCCAC 58 NA Rattus norvegicus 81 Zc3h12a ENSRNOG00000009131 ENSRNOT00000012314 3 1 1 81 5 143113145 143113586 TCAATGACAAGTTCATGCCC 59 143113083 143113101 AGTGGTTTCTTACGCAGGA 59 NA Rattus norvegicus 81 Rrp12 ENSRNOG00000048495 ENSRNOT00000073193 3 1 1 80 1 261127038 261127058 TTGGAATTGCAGTAACCTGTC 59 261126771 261126996 TCAGGATCTCCTTGAGGGT 59 NA Rattus norvegicus 81 LOC102549173 ENSRNOG00000045644 ENSRNOT00000074763 3 1 1 68 17 43807521 43807539 TGGCTCGTACTAAGCAGAC 59 43807471 43807489 TAGTAGCCAGCTGCTTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362432 ENSRNOG00000019811 ENSRNOT00000026932 2 1 1 80 16 8324511 8335454 ATAAATGTACAGGTGGTCTTCG 58 8324452 8324473 TATACAGTGCATAGACACTGGT 59 NA Rattus norvegicus 81 Glycam1 ENSRNOG00000036826 ENSRNOT00000055270 2 1 1 97 7 145173044 145173065 GAATCTACCAAACCACAGAGTC 59 145172730 145172986 TTTCCCTCTGAGGTTGCAG 60 NA Rattus norvegicus 81 LOC100362916 ENSRNOG00000030110 ENSRNOT00000050944 1 1 1 60 15 28051321 28051340 ACAGCTATGTTCAGTTCCAC 58 28051362 28051381 TTCATGTCCTCTATGCTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000014921 3 1 2 80 9 105612349 105629396 TGAAGTGGATACCAACAGC 58 105612287 105612305 ACTTCAGTGCCATTGACAG 58 NA Rattus norvegicus 81 Elf3 ENSRNOG00000006330 ENSRNOT00000008754 1 1 1 81 13 52086658 52086676 GTTCCCACTCCTCTGACTC 59 52086441 52086613 GGAAAGCCATCTCTAGGGA 58 NA Rattus norvegicus 81 Olr878 ENSRNOG00000043334 ENSRNOT00000064311 3 1 1 60 7 3499133 3499151 CGAGAACTCTCCTGCTCTG 60 3499091 3499109 CAGATGCCACGAGAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn1 ENSRNOG00000016409 ENSRNOT00000021955 1 1 1 60 18 786351 786372 AGTTTCAATGACTTCTTGGCTG 60 786312 786332 CCTCTTTGGTATCTTTCTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0773.5 ENSRNOG00000032807 ENSRNOT00000047432 3 1 1 63 X 77299135 77299153 CATCATTGCTGCCAAGGAC 60 77299090 77299108 TGTACTCCTGTCAACCTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065970.1 ENSRNOG00000000124 ENSRNOT00000000136 3 1 1 60 9 110640 110661 TAGCTGTGCCTATCTGTAACTC 60 110601 110620 AGGACTTTCCCAACAATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914,ENSRNOT00000010929 2 2 2 172 7 31784583 31784601 GTGAAGAGCCGAAAGAAGC 59 31784737 31792213 TGAAATACAAGCCAGGCCA 60 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 3 2 2 80 20 46754142 46754937 ATTTCGTGTCCAGGACTACTG 60 46754978 46754997 ATTAACTGTCCCACATCCGG 60 NA Rattus norvegicus 81 AABR07000156.1 ENSRNOG00000029897 ENSRNOT00000044523 1 1 1 60 1 1545836 1545855 CTATAACTTATGCCGCTGGA 57 1545878 1545896 ACCACCAGTACAAATCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfdc3 ENSRNOG00000042162 ENSRNOT00000065751 2 1 1 80 3 161209127 161209147 GATACCTCTTCCTCATGAACG 58 161197477 161209086 CTCTTAATTCGTGCTCTCCT 57 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000079470 1 1 3 81 8 115142551 115143896 TCCTTCTCTTCATCCAGCTG 59 115142251 115142269 ATTCTGCAGCTGTAGGTCC 60 NA Rattus norvegicus 81 Chst13 ENSRNOG00000025930 ENSRNOT00000029915 3 1 1 282 4 122237681 122237699 CTGCACTTCTGTTCCTGTG 59 122225220 122225238 ACGTAGCAGTACAGAAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Hhipl1 ENSRNOG00000028390 ENSRNOT00000034883 1 1 1 80 6 132225005 132225026 GTATCAGCGAGTTCAGAATCTC 59 132225063 132228821 CTTCAATCTCCAGGATTATCCTC 58 NA Rattus norvegicus 81 Surf6 ENSRNOG00000005031 ENSRNOT00000006699 1 1 1 84 3 5443825 5443843 AAGGAGGAACCAGTCAAGG 59 5442798 5443783 CTACCTCCACCTTATTAAAGATCAG 59 NA Rattus norvegicus 81 AABR07070555.1 ENSRNOG00000049584 ENSRNOT00000039376 3 1 1 61 8 74877390 74877408 ATCATCTCTAGGCACCGAC 59 74877432 74877836 AATTTAGCTCGTGGGTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Ube3c ENSRNOG00000010702 ENSRNOT00000015232 1 1 1 80 4 2535466 2535485 ACAAGGATGGCTTCTATCTG 57 2535526 2546247 TAAACTGTAGAGAAGCCTGAC 57 NA Rattus norvegicus 81 Klhl6 ENSRNOG00000001908 ENSRNOT00000002617 3 1 1 80 11 84772808 84775796 TTCTGGCAACGAGATTATTTCG 60 84775835 84775855 CCACCAATGATCATGAACACC 60 NA Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 3 2 2 80 17 4338153 4339219 GGATGTTAAAGACAAGTCTGGAG 59 4338095 4338116 CACAAGAGTTGAACCACATCTG 60 NA Rattus norvegicus 81 Ino80c ENSRNOG00000016532 ENSRNOT00000022169 3 1 1 81 18 16002327 16003563 CCAACTTTGTGCACTCTGG 59 16002264 16002282 GCGAGGATCTGTTTGAGGT 60 NA Rattus norvegicus 81 Pcbd1 ENSRNOG00000000566 ENSRNOT00000000687 3 1 1 80 20 30694403 30695946 TAACGTGTACAACAAGGTCC 58 30695989 30696007 CTGGCCAGGTTTATATCCC 57 NA Rattus norvegicus 81 Zcchc4 ENSRNOG00000029064 ENSRNOT00000042757 3 1 1 80 14 60512460 60516525 GAGCTAACAACGCTGTCAG 59 60512398 60512419 TTCATGGATTGTCCTTTAGTGC 59 NA Rattus norvegicus 81 Dusp2 ENSRNOG00000013862 ENSRNOT00000018549 2 1 1 80 3 119777598 119777957 TCCTATCTATGACCAGGGTG 58 119778000 119778018 TGAAGATCTGAGGAGTGGT 57 NA Rattus norvegicus 81 Brf1 ENSRNOG00000014595 ENSRNOT00000019689 1 1 1 80 6 137789393 137789411 TTAACGTGTATGTGCTGGG 58 137782418 137789349 AGCATGGGTCTATAGCTGG 59 NA Rattus norvegicus 81 Brf1 ENSRNOG00000014595 ENSRNOT00000019689 2 1 1 80 6 137789392 137789411 TTAACGTGTATGTGCTGGGA 60 137782418 137789349 AGCATGGGTCTATAGCTGG 59 NA Rattus norvegicus 81 Mir140 ENSRNOG00000035609 ENSRNOT00000053732 1 1 1 60 19 39608985 39609007 CTATGGTAGGTTACATCATGCTG 59 39609027 39609045 CTCCAGTATCCTGTCCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 2 1 1 60 8 117932192 117932211 CAATCTCTACCGTCTCCTGG 59 117931647 117932169 AGTATCTGGGTCCTCATCC 58 NA DesignNoJunction Rattus norvegicus 81 Stau1 ENSRNOG00000007781 ENSRNOT00000010633 1 1 1 80 3 163717755 163717773 GAAACATGATGCCACTGCC 60 163714670 163717714 TCTCTTCCATTTACCTCTAGCC 59 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930,ENSRNOT00000074573 2 2 2 80 7 106751222 106751242 ATGCTTCGAATGGATAGGAGG 60 106747904 106751182 GGTGATGAGTTCTTTGCTGTG 60 NA Rattus norvegicus 81 Klf13 ENSRNOG00000015822 ENSRNOT00000066380 3 1 1 97 1 124803196 124803214 CTCTGTCTCACTGTCGGTC 60 124772951 124772970 AACTTCTTGTTGCACTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Klhl12 ENSRNOG00000004193 ENSRNOT00000005832 1 1 1 80 13 51308166 51308185 AGCAGTCTCCTATTGATGTG 57 51308228 51309667 TCTTGCGAGTGATACTTGG 57 NA Rattus norvegicus 81 Olr1200 ENSRNOG00000051184 ENSRNOT00000076308 3 1 1 60 8 40345830 40345850 GCATTCTCCACATTAGTTCCA 58 40345869 40345890 TGAGAAGTGCAGGTACTAAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccar1 ENSRNOG00000000397 ENSRNOT00000067004 2 1 1 80 20 32409661 32409682 CCAGCAAACTATCAGTTAACAC 58 32408701 32409621 AGGTTGTGAATATTGCTGCT 58 NA Rattus norvegicus 81 Fam131a ENSRNOG00000046177 ENSRNOT00000075606 3 1 1 85 11 83900777 83900963 TCCCTGCATGGTATTTCCC 60 83900710 83900728 TCGATAAGGTGAGCCACAC 60 NA Rattus norvegicus 81 Rhoj ENSRNOG00000021919 ENSRNOT00000031979 2 1 1 86 6 98356948 98356966 ACAACGTTCAGGAGGAGTG 60 98357016 98358943 GGAGATCAATCTGGGTCCC 59 NA Rattus norvegicus 81 Aacs ENSRNOG00000000967 ENSRNOT00000001292 2 1 1 80 12 36529306 36536603 TTTGGTGTGAATGGTGTCC 58 36529244 36529262 GTTGTAGACCACAGCTTCC 58 NA Rattus norvegicus 81 Zfp536 ENSRNOG00000014163 ENSRNOT00000018956 1 1 1 117 1 93866709 93946826 TTCTTCAGACATCGGCGAG 60 93866610 93866629 GAAAGTCTTCGCACAGTACG 59 NA Rattus norvegicus 81 LOC100360344 ENSRNOG00000031848 ENSRNOT00000052021 2 1 1 73 6 138736059 138736185 AAAGGTGTCCAGTGTGAGG 60 138736004 138736023 AGTTTCATGGACCTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Dhrs1 ENSRNOG00000020264 ENSRNOT00000027511 3 1 1 80 15 34426218 34428302 AATGTTGGACTCAGAGGCC 60 34426156 34426175 CACGATAAGTCCTTTGCCAG 59 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 1 2 2 80 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859816 112863266 ATTGTATATTCACCTGTGCTGG 59 NA Rattus norvegicus 81 Mrps17 ENSRNOG00000000926 ENSRNOT00000001229 3 1 1 82 12 30572267 30572285 AAAGTAAGAGCGACCAGAC 57 30571160 30571178 GCGTCATGAGCAAAGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911779 ENSRNOG00000017230 ENSRNOT00000023215 2 1 1 80 1 263503375 263506438 AGTCTGTTTCCAGGGTCTG 59 263503313 263503332 CGAGGGATGTCATAGGACTC 59 NA Rattus norvegicus 81 Igh-1a ENSRNOG00000048402 ENSRNOT00000045874 2 1 1 80 6 138092878 138093005 TCACAAATGCCCAGTTCCT 60 138092816 138092835 ATCAAGAGGATGTCCTTGGG 59 NA Rattus norvegicus 81 LOC100909747 ENSRNOG00000048028 ENSRNOT00000071957 3 1 1 60 1 76651879 76651899 ACGAGGAAGACTTTGAGAGTG 60 76651839 76651860 CTTTGATACCACTGGATAGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nap1l2 ENSRNOG00000003025 ENSRNOT00000004038 3 1 1 60 X 73998403 73998422 ACATAGAATGGAACGAAGGG 57 73998362 73998383 TGTCTCTGTTTCTTCTTGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1214 ENSRNOG00000031929 ENSRNOT00000071356 1 1 1 60 8 40449619 40449639 CTTTGATCCTTTCCAACATCC 57 40449660 40449679 CTGAAGGCTTTCGATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595,ENSRNOT00000021858 3 2 2 80 1 177140752 177140770 TGAGCAGTACACATTGGAC 58 177140814 177141431 AAATGCTTCACCTGGTGAG 58 NA Rattus norvegicus 81 Ccbl2 ENSRNOG00000043426 ENSRNOT00000067165 1 1 1 80 2 248667434 248667453 TTTACGACTGTTATGAGCCC 58 248667492 248668068 CATCTGTTCTTACAGATCTCAGG 59 NA Rattus norvegicus 81 Uhmk1 ENSRNOG00000002941 ENSRNOT00000003950 2 1 1 80 13 88523585 88526986 AGAGGACAAGTCTTTGTTGAG 58 88523525 88523543 GTCAAACATCCTCCCAGTC 58 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 1 2 2 80 13 53318589 53319239 AGATACTGAAGGGACTACTGGA 60 53319280 53319298 TGACCAAATCTAGGCCTCG 59 NA Rattus norvegicus 81 Bag5 ENSRNOG00000011527 ENSRNOT00000015333 2 1 1 60 6 136277595 136279255 CACAGTGCTTGTGAAACTG 58 136277553 136277574 TAATAGAAGGGTGTTGGTTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 3 2 2 80 13 26988644 26988666 GCTCATTATACTCTGAGTATGGC 59 26988703 26989174 TATGTCATCAGAGTATTCCGGG 59 NA Rattus norvegicus 81 Fzd5 ENSRNOG00000014678 ENSRNOT00000019698 2 1 1 60 9 71444612 71444633 CCACATTCACTATGAGACTACC 58 71444573 71444593 GTAGACTAAGAGGAAGACGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 1 3 3 80 14 762048 763236 GTTTCCAATGAGACAGTACATATGG 60 761992 762010 GCAGTAGGTCTGCTCTGAG 60 NA Rattus norvegicus 81 Dkk3 ENSRNOG00000016343 ENSRNOT00000022301 1 1 1 83 1 176976048 176976066 AACTACCACAACGAGACCA 59 176974100 176976004 GTTGGTTATCTTGTGAACCTCC 59 NA Rattus norvegicus 81 Olr1376 ENSRNOG00000049640 ENSRNOT00000041353 1 1 1 60 10 12673675 12673696 CACCCTTTAAACTACACAACCA 59 12673636 12673654 ATCCAGCCACCATCAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC95208 ENSRNOG00000000720 ENSRNOT00000000911 1 1 1 80 11 1818797 1818815 CAATGACGAGATCATGGCC 59 1817431 1818753 GCACGAATAGCATCTTGGC 60 NA Rattus norvegicus 81 Mir345 ENSRNOG00000035618 ENSRNOT00000053741 3 1 1 62 6 132748993 132749011 TAGTCCAGTGCTTGTGGTG 60 132749037 132749055 GATCAAACCCAGGTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 3 2 2 81 11 82647442 82649228 ACATCATAGTTCTCAGAGAACG 58 82647382 82647402 TGTTCTGACTCCATGATTCTG 58 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 3 2 2 81 12 30795658 30795676 GAAGATGGGAGTTACCTGC 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 3 2 2 80 15 38192632 38193687 CATCGAGGTTTATGGGTGTC 59 38192571 38192590 CACTCCCTTAATGCTTTCCT 58 NA Rattus norvegicus 81 Mir20b ENSRNOG00000036558 ENSRNOT00000054662 1 1 1 60 X 140117563 140117581 AAAGTGCTCATAGTGCAGG 58 140117521 140117540 TACCAGAAGTGCTCACACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr209 ENSRNOG00000045692 ENSRNOT00000041335 1 1 1 60 1 170763334 170763353 GGAGGTTCTTTCATCTTGGT 58 170763293 170763312 CACAGAGCATTTCAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034008.1 ENSRNOG00000001601 ENSRNOT00000002177 1 1 1 60 11 47793390 47793409 GGTGACTCGAGAATACACCA 59 47793432 47793450 CTTCTTGAAGCCCACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmrn1 ENSRNOG00000024986 ENSRNOT00000030320 2 1 1 80 4 91001089 91003597 CTCCCGAAGATCTCAGAAGTC 60 91003636 91003657 CAGCATCTCCATTCTAATGAGG 59 NA Rattus norvegicus 81 Olr1061 ENSRNOG00000048023 ENSRNOT00000046955 3 1 1 60 7 9192734 9192753 TGGCTATTTGTCATCCACTG 58 9192693 9192713 AATTTCAAACAGGCAGAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Orc1 ENSRNOG00000008841 ENSRNOT00000012492 2 1 1 80 5 128199974 128199993 ATACTTCTATTCGTGCCCGT 59 128200033 128200542 CATCATCTAGAAGCCAAAGCTG 60 NA Rattus norvegicus 81 Mus81 ENSRNOG00000020617 ENSRNOT00000028015 3 1 1 81 1 220863992 220864506 CTTTCGAGAGCAGAAGTTCC 59 220863930 220863948 TTGGACAGACCCATGTTCC 60 NA Rattus norvegicus 81 Cenpj ENSRNOG00000022597 ENSRNOT00000065764 3 1 1 80 15 36775738 36775758 TCTTCGAGAAGTACACAGCAG 60 36758145 36775696 TGGAACCATTCAGAGCCTG 60 NA Rattus norvegicus 81 Lcn2 ENSRNOG00000013973 ENSRNOT00000018776 1 1 1 80 3 11415454 11415613 GGAATATTCACAGCTACCCTC 58 11415394 11415412 ATACCATGGCAAACTGGTC 58 NA Rattus norvegicus 81 Chchd3 ENSRNOG00000013211 ENSRNOT00000018001 3 1 1 80 4 60194806 60194827 AAAGATCGAATGATACGGAAGC 59 60132367 60194768 GTAGAATTCTGAGCTCCTCTCC 60 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 3 2 2 80 6 104280893 104283649 GATCTCAGCTGTCTTGTTTACC 59 104280834 104280857 GTAGATCTTCTCTTTGATCCAGTC 59 NA Rattus norvegicus 81 Olr964 ENSRNOG00000047818 ENSRNOT00000061633 2 1 1 60 7 6936533 6936553 CCATCATCACTCTCACATTGG 59 6936493 6936513 CTCAGGAAGAAATACATGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054897.1 ENSRNOG00000042226 ENSRNOT00000043955 2 1 1 80 3 173269736 173269756 AATCCTTTGCCAAAGAGTCTC 59 173269797 173270021 TTCCCAAATGGAGCATACAG 58 NA Rattus norvegicus 81 Tmem110 ENSRNOG00000017051 ENSRNOT00000023314 2 1 1 80 16 6947608 6947628 CATAGGGATGCTCTTCATCCA 60 6947669 6949860 ATGAGGTACAGTGAGCAAGG 60 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 1 2 2 80 13 52860361 52860380 CATGATGTGGAAGCCTACTG 59 52860421 52863396 GACGATAATGACCTTGATGGT 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052,ENSRNOT00000087906,ENSRNOT00000014709 2 5 5 82 2 1511562 1511581 TCCCAGAATGAGTACCACAG 59 1508846 1510429 CATGAATCACAGGTGGCTC 59 NA Rattus norvegicus 81 Prss29 ENSRNOG00000039405 ENSRNOT00000060387 3 1 1 81 10 14681414 14681432 TCCAATCATGGCCAGAGAC 60 14681476 14681575 CTGAGTCACCATAGCAGGAG 60 NA Rattus norvegicus 81 AABR07037412.1 ENSRNOG00000030999 ENSRNOT00000049138 3 1 1 60 X 20359810 20359830 TTGTAGACATCAAGGGAATGG 58 20359770 20359788 CCGTGGTAACACTTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a46 ENSRNOG00000017091 ENSRNOT00000023032 3 1 1 81 18 24371278 24381691 GATCGAAACAGTACAGAGTGAG 59 24371218 24371236 TATCACCCGTCCAATTCCT 58 NA Rattus norvegicus 81 Mir363 ENSRNOG00000036273 ENSRNOT00000054396 3 1 1 64 X 140117159 140117177 GTTATCGGGTGGATCACGA 59 140117113 140117133 ATGGATACCGTGCAATTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir143 ENSRNOG00000035603 ENSRNOT00000053726 1 1 1 60 18 56971319 56971337 CTCTGGTCAGTTGGGAGTC 59 56971277 56971296 CAGAACATCTTCTCCCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec1b ENSRNOG00000057335 ENSRNOT00000082537 2 1 1 80 4 163167142 163168785 GCACGCTGAAATACATCAC 58 163168826 163168847 TCCAGTCTTTCTTAGAGTTCTG 57 NA Rattus norvegicus 81 Cad ENSRNOG00000026474 ENSRNOT00000039709 1 1 1 80 6 26657879 26658009 CGTGTCAATGAGATAAGCGTG 60 26657819 26657838 GATGTACATGCCGTTCTCAG 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895,ENSRNOT00000086978 2 3 4 63 20 3827129 3827147 TTTCCTCCCTACCTCTGGA 59 3827347 3827365 ATGAGGAGCTCATTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Gpat2 ENSRNOG00000013906 ENSRNOT00000018677 3 1 1 81 3 119999701 119999719 TCAATGCTCGAAGTTGCTG 59 119999761 120000022 ACAACACTACATTCACCTAGCA 60 NA Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000029104 3 1 2 81 14 64391597 64475196 ACTATTCAAAGTCTACTGTGCG 59 64391537 64391555 GAAGAGACCAAACCGTCTG 58 NA Rattus norvegicus 81 Rn60_X_0768.2 ENSRNOG00000031310 ENSRNOT00000048122 1 1 1 60 X 76773267 76773285 CATGTTTGTGATGGGTGTG 57 76773308 76773327 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntn1 ENSRNOG00000003947 ENSRNOT00000005255 3 1 1 83 10 54762318 54775832 GAAGGACTATGCTGTCCAG 57 54762253 54762271 ACGGAGATGATGTTCACTG 57 NA Rattus norvegicus 81 Olr1442 ENSRNOG00000031246 ENSRNOT00000042880 2 1 1 60 10 44528079 44528099 CATTCTGTTGTTACCCTTCCT 58 44528121 44528139 GAATACAACCAACACCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam172a ENSRNOG00000013844 ENSRNOT00000041541 1 1 1 80 2 5335503 5411543 TGTTGAACTGATGATCCAACG 59 5411583 5411603 ACATTGTGAACAGAGTCTGTC 58 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 1 2 2 81 6 132551492 132551510 CCGGATCAACATCTACCAC 58 132551555 132555560 GATCACAACCTGCTGATCC 58 NA Rattus norvegicus 81 Zfyve9 ENSRNOG00000027183 ENSRNOT00000037523 2 1 1 80 5 128286652 128289817 CATGAATCTTCTAGCAGACTTCC 59 128286594 128286614 CGAACTTCCATATCAACCACC 59 NA Rattus norvegicus 81 Tlr7 ENSRNOG00000004249 ENSRNOT00000005620 2 1 1 134 X 28486977 28487333 TCAAGAAAGATGCCATTGGA 58 28508898 28508918 CTCTTCAATGTCCACATTGGA 58 NA InUTR Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 2 2 2 81 3 118128282 118128300 AGGTGAGAAGGGAGAATGG 58 118125093 118128240 CATTTCTGGAAAGTTTGTCAGC 59 NA Rattus norvegicus 81 LOC100911337 ENSRNOG00000047151 ENSRNOT00000073269 3 1 1 60 4 120408022 120408046 CCCAACTATAAGCTTATTACTCCAG 59 120407986 120408006 AGGAACCTCGAATCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtn4r ENSRNOG00000030920 ENSRNOT00000051037 1 1 1 60 11 86993154 86993172 CTTAGAGGGTTGTGCTGTG 58 86993112 86993130 AGTGAGCTGATTGGTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas1r3 ENSRNOG00000019589 ENSRNOT00000026671 1 1 1 80 5 173311712 173311847 CATCCTATGTACCAGGTTCTC 57 173311652 173311673 CCATTGTTGATCTCCTCTACAG 58 NA Rattus norvegicus 81 Prr32 ENSRNOG00000049388 ENSRNOT00000074384 3 1 1 66 X 131617892 131617913 CTTGATCGTATTTCTACATGGC 57 131618768 131618788 ATTATGGATGAACGGCTATGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp697 ENSRNOG00000048181 ENSRNOT00000074666 1 1 1 110 2 200572728 200575244 CCACTGTCTGTTCAGAGGG 60 200575318 200575336 CTGACAGTCCTGGGAACAG 60 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000048181 ENSRNOT00000074666 3 1 1 117 2 200572728 200575244 CCACTGTCTGTTCAGAGGG 60 200575324 200575343 TCAGATTCTGACAGTCCTGG 59 NA Rattus norvegicus 81 AABR07055747.1 ENSRNOG00000030254 ENSRNOT00000041966 3 1 1 82 7 8883046 8883064 TCACATATGTGCTGAGCGT 60 8882980 8883003 GAAATACATGGTCTTCAGGTGG 59 NA Rattus norvegicus 81 Gapvd1 ENSRNOG00000017925 ENSRNOT00000066961 3 1 1 80 3 13767619 13767638 GGACAAATACCGAAATGCCA 59 13765872 13767577 CCCATGACCTCTGTACTCTC 59 NA Rattus norvegicus 81 RGD1561795 ENSRNOG00000009203 ENSRNOT00000012217 2 1 1 101 8 13285940 13290568 CTCGCCAACAATGGAAGAC 59 13285857 13285875 TCACGTGACATTCATCCCT 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000089984,ENSRNOT00000081017 2 2 6 110 1 41590564 41590585 CCTTACAAACCTACTACATCCC 58 41591589 41591607 CCATGTATTTGCTCCCTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ifna5 ENSRNOG00000031046 ENSRNOT00000049705 1 1 1 60 5 107039826 107039847 CCTCATACTCATAACCTCAGGA 59 107039787 107039805 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3559 ENSRNOG00000050872 ENSRNOT00000074039 2 1 1 69 X 75459302 75459326 GACAGACTTAGTACTACATGATCCA 60 75459257 75459275 TACTCACTGCACGACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samd8 ENSRNOG00000013236 ENSRNOT00000018023 3 1 1 80 15 2701538 2705855 ATTCTTAGACAGTGTTCCTAGG 57 2701479 2701497 ATCCAGATGTAGCACAGGA 58 NA Rattus norvegicus 81 Tprg1 ENSRNOG00000001923 ENSRNOT00000002634 1 1 1 80 11 78822606 78822627 GACTTGAAAGGTCACATAGCAC 60 78795003 78822568 GTTCCAGTGATCAATCTCTGTC 59 NA Rattus norvegicus 81 AABR07029262.1 ENSRNOG00000029706 ENSRNOT00000039882 3 1 1 60 10 18637208 18637226 TTGGGTCCTAAGTCTGTGG 59 18637249 18637268 CAAGTTCTTTAGCCTTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 1 2 2 80 1 64089296 64089537 CTAAAGTTGATTGGAGAGTATGGG 59 64089239 64089257 CTTACGAATCTTCGCCAGG 58 NA Rattus norvegicus 81 Dlgap3 ENSRNOG00000014302 ENSRNOT00000019214 2 1 1 80 5 145301417 145301435 TGGAGAAACTGGAACACTG 57 145301477 145302504 TCTTCTCTAAGATCTCCTCCG 58 NA Rattus norvegicus 81 LOC684936 ENSRNOG00000033559 ENSRNOT00000041273 3 1 1 60 10 36502144 36502163 GATGCCAACAAGAACAAAGG 58 36502103 36502124 TTTCCAAATACTCCATCAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4f ENSRNOG00000013137 ENSRNOT00000017643 1 1 1 80 4 115330663 115330682 GGAGACAGAAGCAGAATGAG 58 115329285 115330621 GGGAACAATTGTCAGATCCA 58 NA Rattus norvegicus 81 Fgf2 ENSRNOG00000017392 ENSRNOT00000023388 3 1 1 91 2 124123433 124133935 CTGCTGGCTTCTAAGTGTG 59 124133990 124134008 GAGTATTTCCGTGACCGGT 60 NA Rattus norvegicus 81 Olr803 ENSRNOG00000054505 ENSRNOT00000077710 2 1 1 60 4 71892588 71892607 CACAAAGCCTTTGAGACCTG 60 71892547 71892566 CCATCCCATAAGACATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lbx2 ENSRNOG00000008466 ENSRNOT00000011189 1 1 1 164 4 114784621 114784639 ACTTTCCAGGGCCATTCTC 60 114785837 114785855 CTTCTGGAAGACGAATCGC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1310641 ENSRNOG00000009061 ENSRNOT00000051243 3 1 1 80 5 50149114 50153067 CATACAACTGGCTAATTTGCG 58 50149054 50149076 GAGGCATTATCTCTTCTCATGTG 59 NA Rattus norvegicus 81 Prr7 ENSRNOG00000021447 ENSRNOT00000036162 2 1 1 84 17 9694608 9694626 TCTACCGCAAGATCGTCAC 60 9694542 9694560 AGAGGCTTGTAACTCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scarf2 ENSRNOG00000000288 ENSRNOT00000000313 1 1 1 112 11 87728702 87728720 ACTTACGGTGAGGACTGTG 59 87728796 87729245 ACATTACAGTGAGGTCCGT 58 NA Rattus norvegicus 81 Olr1492 ENSRNOG00000054729 ENSRNOT00000082795 3 1 1 60 10 60427933 60427952 TGTGAAGGAGATTGTCATGG 58 60427892 60427910 GAAGGGATTCAGCATGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oxt ENSRNOG00000021225 ENSRNOT00000028829 1 1 1 130 3 123106839 123107080 ATATGCGCAAGTGTCTTCC 58 123107174 123107192 GTAGTTCTCCTCCTGGCAG 59 NA Rattus norvegicus 81 Zfp292 ENSRNOG00000031031 ENSRNOT00000035808 3 1 1 80 5 50318895 50318914 TGTTAAAGCTCGACCATACC 58 50318654 50318852 TCAACACAGCTTAATGCCA 58 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000044325,ENSRNOT00000019319 2 2 2 80 1 4802182 4810357 CAGATTAAGGTCATACGGAAAGG 59 4802124 4802144 GTCCTGCACAAACTCATTCTC 60 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079640,ENSRNOT00000091697,ENSRNOT00000079108 3 5 5 80 3 8594113 8594486 TTCCGAAAGGTAGAAGACCTC 59 8594525 8594546 CTCTTCTGCATTCTCAAACCAG 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 3 3 3 100 6 136151629 136153817 CTGTGGTCTGTGAATCAGG 58 136153881 136153899 CTGGTGGAATTCTACCGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tshz3 ENSRNOG00000013938 ENSRNOT00000018931 2 1 1 97 1 92708024 92774932 CAGCCTATGTTTCCGATGAG 59 92707946 92707965 ATACTTGGCTGAAGGCTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Ns5atp9 ENSRNOG00000016561 ENSRNOT00000022256 3 1 1 65 8 71518979 71518997 GAAGAAGCAGGAAGCAGTG 59 71526142 71526161 GTGATCAGGTTGCAAAGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Gar1 ENSRNOG00000061146 ENSRNOT00000078074 2 1 1 89 2 235257064 235257082 GAGGAGGATTTGGACGAGG 60 235255606 235257014 ACTCTCCTAATAAGACGACTCG 59 NA Rattus norvegicus 81 Amd1 ENSRNOG00000000585 ENSRNOT00000000715 1 1 1 80 20 45391787 45399270 TACCATCCCAAGATCCGAG 58 45391725 45391744 TGCTTGTCAGTCTTTGTCAC 59 NA Rattus norvegicus 81 Hmgcs2 ENSRNOG00000019120 ENSRNOT00000026121 1 1 1 80 2 200476103 200477269 TACCACAAGGTGAACTTCTC 57 200477312 200477330 CTCATCCACTCGTTCAAGG 58 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000047766 1 1 2 81 1 86733176 86733194 GAAGAACCACTGCTTGCAG 60 86733105 86733134 GGATATACTAGCAGGCAGAGTC 60 NA Rattus norvegicus 81 Best1 ENSRNOG00000020346 ENSRNOT00000007320 1 1 1 80 1 226040546 226040927 AGAGCCTGATGAATGAGGT 58 226040484 226040505 CCAATGGGATATTGATCCAGTC 59 NA Rattus norvegicus 81 Ogfod1 ENSRNOG00000019288 ENSRNOT00000026118 1 1 1 80 19 11449295 11449316 CTTCAGAAAGAACTCTTGAGCC 59 11442774 11449255 CTTCAAATCATCGGACTGCT 58 NA Rattus norvegicus 81 Fgf3 ENSRNOG00000020888 ENSRNOT00000028343 1 1 1 80 1 218003168 218003186 GCTACCAAGTACCACCTCC 60 218003230 218004985 CTCCAGGATGCTATAGGCG 60 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139 2 1 2 81 4 166211729 166213358 AGGAACCAGAACTTCAGAGC 60 166213402 166213420 TTAGCAGGTGGTCTTGGTG 60 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000050888 ENSRNOT00000065282 1 1 1 80 7 13883718 13883738 CTTGGAGTCCAAGACTAAGTC 58 13883778 13884458 TTTCCATGTTCATCCTTAGCC 58 NA Rattus norvegicus 81 Gas8 ENSRNOG00000026964 ENSRNOT00000029999 3 1 1 80 19 56323100 56323928 GGAGATCAAGGTTTACAAGCA 58 56323970 56323988 CCCTCAGTCTTCACCTCTG 59 NA Rattus norvegicus 81 Gucy2g ENSRNOG00000015724 ENSRNOT00000021746 2 1 1 80 1 276215379 276215397 TCCTGAATACAAACCCGAC 57 276214703 276215335 GATGCAGTCATACCTGCTC 58 NA Rattus norvegicus 81 AABR07036035.1 ENSRNOG00000022784 ENSRNOT00000029702 1 1 1 113 12 31759567 31759585 TGGATGTGTATTGGAGCCG 60 31759467 31759487 ATGGGTCGATGAAGGTGAG 59 NA Rattus norvegicus 81 Olr157 ENSRNOG00000017252 ENSRNOT00000023170 3 1 1 60 1 169616543 169616563 TTCTACCATCCTCACTGACAC 59 169616582 169616603 GCCTCTCATCATAGCTACTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasa1 ENSRNOG00000029185 ENSRNOT00000046251 2 1 1 80 2 13618119 13619490 GATGAACTTGGGAATGTACCTG 59 13618060 13618078 CAATGCTGCTAAGTCACGA 58 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 2 2 2 80 4 133120716 133121612 AAGAAATAGGTGCTTCCGG 58 133120654 133120672 GAGTCTGCTCAATTTCCCA 58 NA Rattus norvegicus 81 Pfdn6 ENSRNOG00000000473 ENSRNOT00000000553 3 1 1 81 20 5456535 5456645 CATTGTGAAGGAGGAACTGG 59 5456689 5456707 CTCCTGTTTGACAAGCACG 60 NA Rattus norvegicus 81 Rnf115 ENSRNOG00000000098 ENSRNOT00000000110 2 1 1 83 2 198917656 198917674 AGAAAGTCCGGCAGTTACC 60 198917721 198918756 CTGGACATGTGTCATGCAG 59 NA Rattus norvegicus 81 Bhlha9 ENSRNOG00000022232 ENSRNOT00000032934 3 1 1 66 10 63499142 63499161 ACGAAGCGTTTAATGCTCTG 59 63499095 63499113 ATCTTGGAGAGCCTCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Naa15 ENSRNOG00000012385 ENSRNOT00000017379 3 1 1 80 2 140515770 140516888 GTTCCAAGTTTACAAGGGAAGG 60 140516928 140516947 CACATTCTGTCTGGAACCAC 59 NA Rattus norvegicus 81 Trappc10 ENSRNOG00000023210 ENSRNOT00000032240 2 1 1 80 20 11201150 11204313 CTCTTAGAAGTCTCTGTCCCT 58 11204354 11204373 TTCTATCCTCTGCAAGACCT 58 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787,ENSRNOT00000088006 2 3 3 80 12 37619205 37619228 TCTGGAGGTAAATATAAGACCAGG 59 37619264 37620031 ATCAAACACTATCACTCCATCG 58 NA Rattus norvegicus 81 Lysmd3 ENSRNOG00000016298 ENSRNOT00000021818 1 1 1 95 2 9529917 9529936 GACAGACTTGATGACATCGT 58 9529994 9531649 ATCTGCTACCGTACAACAG 57 NA Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 1 1 1 80 17 36906743 36915423 CTACCGGACAGACAGTGTG 60 36906681 36906700 CATGTTACATGCGAACACCA 59 NA DesignNoJunction Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 1 1 1 63 18 27658070 27658088 CGCTTTCAATCCTCAAGGG 59 27658115 27658805 AAAGGACTCTGTGGTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000085581 1 1 2 140 17 13802503 13802700 ACTGTTGAGCTTCATCGTC 58 13802381 13802399 TTGACCTTGTAGGCTATGC 57 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 1 2 2 80 3 118594314 118597335 CCCTTTGTTGGAAATGCAC 58 118594252 118594270 GACTGATGTCACTGCTGTC 58 NA Rattus norvegicus 81 Olr1084 ENSRNOG00000051708 ENSRNOT00000083548 1 1 1 60 7 13632604 13632627 TTCCCTAAGTGGTATCCTTTACTC 60 13632643 13632664 GGAGATAGAACGTATGGAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde6b ENSRNOG00000000065 ENSRNOT00000000077 2 1 1 80 14 2337477 2337496 GTAGCCACCTTCTACAACAG 58 2337135 2337434 GAACTGTGTCAGAGACTCC 57 NA Rattus norvegicus 81 Mir3564 ENSRNOG00000046739 ENSRNOT00000072413 2 1 1 60 19 54632038 54632057 CTGTATCCCTCAAGCTTTCC 58 54632078 54632098 GTCTTCCCTCTTTGCATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl2 ENSRNOG00000018057 ENSRNOT00000024380 3 1 1 97 9 16645049 16645161 ATCCTTGTAGGTCTGCAGAC 59 16644971 16644990 CAGGATTGTATCTCCTGCCT 59 NA Rattus norvegicus 81 Raver1 ENSRNOG00000020710 ENSRNOT00000046983 1 1 1 114 8 22111715 22111733 CTCGATCCGGAAGAGATCC 59 22110250 22111638 CATGTACTTCCTGGTTGGTC 58 NA Rattus norvegicus 81 Raver1 ENSRNOG00000020710 ENSRNOT00000046983 2 1 1 115 8 22111715 22111733 CTCGATCCGGAAGAGATCC 59 22110249 22111637 TCATGTACTTCCTGGTTGGT 59 NA Rattus norvegicus 81 Olr1877 ENSRNOG00000010749 ENSRNOT00000014258 1 1 1 60 7 139835022 139835041 CTTTCTCCCTCCTCTACACC 59 139834981 139834999 CGGAAGCTGTAGATGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1877 ENSRNOG00000010749 ENSRNOT00000014258 3 1 1 60 7 139835482 139835503 ATGATCGTTATGTTGCCATCTG 59 139835443 139835464 ACCTGACGACTTATGATCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kynu ENSRNOG00000029993 ENSRNOT00000043533 3 1 1 80 3 28424206 28424228 GGATGAGGAAGATAAACTGAAGC 59 28424264 28452162 GATAGATCAATTGAAGGCAGGTC 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971,ENSRNOT00000040204 3 2 2 80 9 15637911 15637929 CAGCCAATGTCTACCTGGA 59 15637499 15637870 GCTGTATCTGTGTCTTTGTCAC 60 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 2 2 2 80 11 87693937 87698483 CCTGCCAACTTCAGATACC 58 87698526 87698545 CAAGGATGTTCTCCTCATCG 58 NA Rattus norvegicus 81 Rn60_1_0437.1 ENSRNOG00000055098 ENSRNOT00000088838 2 1 1 60 1 43662399 43662420 CGGAAAGAATGGTTATATCCCT 58 43662440 43662459 TTCTGCCTGAATGGAATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lias ENSRNOG00000002759 ENSRNOT00000003779 1 1 1 80 14 44523576 44523595 GGTGATCTTGCAGACAAGAG 59 44522072 44523536 AGGTAGTCTTAACCTTTCTCCT 58 NA Rattus norvegicus 81 Chkb ENSRNOG00000011404 ENSRNOT00000015374 1 1 1 80 7 130405112 130405279 TTTGGCTACTTGGAATACGC 59 130405051 130405069 AGGTGATAGGAAGCTGGTC 59 NA Rattus norvegicus 81 Gngt1 ENSRNOG00000010546 ENSRNOT00000014219 2 1 1 84 4 28972750 28975162 CTGGAAAGAGTGATGGTTTCC 59 28975206 28975226 CCTTCACTAGAGGGTCTTCTC 59 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501,ENSRNOT00000045647 2 2 2 66 7 130542284 130543210 ATAACACCACGTGTGATGG 58 130543240 130543258 ATCCGGATACCTGCTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Gng11 ENSRNOG00000047914 ENSRNOT00000075326 1 1 1 94 4 28989489 28989507 TTCACATTGAGGATCTGCC 58 28989563 28993221 TTTAGACACCTGTTGTCTCTG 58 NA Rattus norvegicus 81 Gng11 ENSRNOG00000047914 ENSRNOT00000075326 2 1 1 95 4 28989490 28989508 TCACATTGAGGATCTGCCG 60 28989563 28993223 CATTTAGACACCTGTTGTCTCTG 60 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401,ENSRNOT00000090831 2 2 2 80 12 37518091 37518111 GAGAGGAATGAGCTTAAGTCC 58 37518150 37519659 CTCCTCTTCTATTTCTTCGCTC 59 NA Rattus norvegicus 81 AABR07031691.1 ENSRNOG00000060281 ENSRNOT00000090569 1 1 1 60 18 27206000 27206018 TATTTGGCTGAATCCCGTG 58 27205958 27205976 ATCTGCCTCTCCATCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cplx1 ENSRNOG00000000060 ENSRNOT00000061720 2 1 1 106 14 2219657 2224828 AGGGCATACGAGATAAGTATGG 59 2224895 2224913 CTTCTTGGGTCGAGTCAGG 60 NA Rattus norvegicus 81 Spock1 ENSRNOG00000012747 ENSRNOT00000061187 2 1 1 80 17 7796317 7797164 TAAGCTGTGAAGAGGAGCAG 60 7797207 7797225 CGTCGTCTAGGTCATCCAG 59 NA Rattus norvegicus 81 AABR07062185.2 ENSRNOG00000060241 ENSRNOT00000084796 1 1 1 80 4 164201494 164201515 GAATGGATGTAAACAGACCTGC 60 164197510 164201454 CGAAGGAACTTCAGTTCGTC 59 NA Rattus norvegicus 81 Ccdc149 ENSRNOG00000024454 ENSRNOT00000034411 1 1 1 80 14 60929133 60935582 GAGGCAAACCAACAGAATCC 60 60935622 60935643 CACAAACCAGAAACTTCCAGAG 60 NA Rattus norvegicus 81 Adgrg3 ENSRNOG00000014896 ENSRNOT00000020062 1 1 1 80 19 10417471 10420546 GACTTCAGATGAGAACAACGG 59 10417411 10417429 TCATAGTCCTCCTTGAGCC 58 NA Rattus norvegicus 81 Adgrg3 ENSRNOG00000014896 ENSRNOT00000020062 2 1 1 80 19 10417367 10417385 ATTGCTCAGTGTTTCACCA 58 10403787 10417323 GTTCAGCCAGTATCTCTGC 58 NA Rattus norvegicus 81 Hmha1 ENSRNOG00000013220 ENSRNOT00000060648 1 1 1 80 7 12730688 12731040 AATGTGAAGAGTGCTGTCTG 58 12730627 12730645 CCTGAAGCTTCTTGTGACC 59 NA Rattus norvegicus 81 Ifi35 ENSRNOG00000020678 ENSRNOT00000028067 3 1 1 85 10 89365668 89365782 TGACCAACATCCAGGTGTC 60 89365830 89365849 CTCCTCACTCAGCCTAAGTC 59 NA Rattus norvegicus 81 Tyms ENSRNOG00000037225 ENSRNOT00000056243 3 1 1 80 9 121929904 121929924 GAATTTCCTCTGCTCACAACC 60 121928444 121929864 TGTGGAGCCCTTAATAAACCA 60 NA Rattus norvegicus 81 Gxylt2 ENSRNOG00000005621 ENSRNOT00000007419 3 1 1 80 4 133244101 133247330 GAAGTACCCAGTTCAAGAACAG 59 133247370 133247389 TATACTTCTGGTACAGCGGG 59 NA Rattus norvegicus 81 Myl12a ENSRNOG00000015278 ENSRNOT00000021048 1 1 1 125 9 119328281 119332864 CTGAGCAGGGATTTAACCG 58 119328174 119328192 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 Dgkb ENSRNOG00000030771 ENSRNOT00000063874 2 1 1 80 6 57769420 57769438 AAGCCTGAATGTGACTGTG 58 57769480 57791492 GGGCATAGTCAATACAACTGG 59 NA Rattus norvegicus 81 Dgkb ENSRNOG00000030771 ENSRNOT00000063874 3 1 1 80 6 58109729 58238931 GTTTGCAAGTCAAGATCTGAG 58 58238971 58238991 GTGTATATTTGGCCCATTTCC 57 NA Rattus norvegicus 81 LOC100911247 ENSRNOG00000025487 ENSRNOT00000038294 3 1 1 60 7 60987600 60987618 CAAGCAGACCTTCTACCTC 57 60987558 60987576 TGAGAAACGATCCCTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp10 ENSRNOG00000015082 ENSRNOT00000020393 1 1 1 98 1 173525479 173528917 ATCTGTACAGTGGCTGGAC 59 173525399 173525417 TCCTCAAGGTCGTTCAAGG 59 NA InUTR Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 3 2 2 80 2 22073910 22073928 TTGTGGTGTTCAATGGTGC 59 22070371 22073869 GAACCATTAAGCCATCTTCGAC 60 NA Rattus norvegicus 81 Stra8 ENSRNOG00000010573 ENSRNOT00000014093 3 1 1 80 4 62462248 62462268 TACTGAATAAGGCGAAGTCTC 57 62462309 62462764 GGTTGAAGAATCCTTTGAGC 57 NA Rattus norvegicus 81 Mir674 ENSRNOG00000040429 ENSRNOT00000062182 1 1 1 60 3 108864473 108864491 CACTGAGATGGGAGTGGTG 60 108864515 108864533 GAGCCTTGTTCTGAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpa ENSRNOG00000009576 ENSRNOT00000064685 1 1 1 80 5 61777057 61777076 GGAAAGAGTTCATGGACTCG 58 61775918 61777017 GTTTATCATCAGCATCTCTGCA 59 NA Rattus norvegicus 81 Tarsl2 ENSRNOG00000024460 ENSRNOT00000051000 1 1 1 80 1 126558874 126558892 ACTTTAACCGGCTTAACCC 58 126558935 126559228 CAACTTTAACTGCTCCACCA 59 NA Rattus norvegicus 81 Olr1058 ENSRNOG00000050142 ENSRNOT00000041157 2 1 1 60 7 16395124 16395144 CCTTAAACCATCAGTCAAGCA 59 16395164 16395184 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 1 2 2 80 14 3438532 3439787 ACTGTGGTCCAAATTACAAAGG 59 3438473 3438493 ACTACTTGCTTTAGCTGAGGA 59 NA Rattus norvegicus 81 Fbn1 ENSRNOG00000007302 ENSRNOT00000056022 2 1 1 80 3 117575318 117575337 TGCTCTAATACTGAGGGTGG 59 117572358 117575275 TCCAGAAACACAATGCCCT 60 NA Rattus norvegicus 81 Acss1 ENSRNOG00000007102 ENSRNOT00000009627 1 1 1 80 3 146423570 146427249 ATCAAAGGAGAAGCTGCGT 60 146423508 146423528 CTTGAGCTCATTTACCACCAC 59 NA Rattus norvegicus 81 Dusp14 ENSRNOG00000030091 ENSRNOT00000083300 2 1 1 170 10 71364961 71383524 GAGTACGTCCAGGAAGGAG 59 71364809 71364827 TCGGAAATCATCCGAGGAG 59 NA InUTR Rattus norvegicus 81 Krtap24-1 ENSRNOG00000048374 ENSRNOT00000071034 2 1 1 60 11 28583314 28583332 CAACATCAGATGCAGACCC 59 28583272 28583293 GTTGGATACATACCCTTTGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ascl2 ENSRNOG00000020434 ENSRNOT00000027688 2 1 1 204 1 216155860 216156148 TGGAATCGCACTTTAACTGG 59 216155675 216155693 ATCAAGCTTGCATTCAGCG 60 NA DesignRelaxed Rattus norvegicus 81 Hhip ENSRNOG00000018268 ENSRNOT00000024616 3 1 1 80 19 31593185 31595386 GGAAGAGATTACGAAAGCGAG 59 31595427 31595446 GTAAACGAATCCACCAACCA 59 NA Rattus norvegicus 81 Crb1 ENSRNOG00000010903 ENSRNOT00000032122 3 1 1 80 13 56307737 56307757 GACTTGGTCAACAGATTCCAG 59 56271242 56307695 CCTGTCATCAGCCAAATCC 59 NA Rattus norvegicus 81 Eno4 ENSRNOG00000018310 ENSRNOT00000065289 1 1 1 80 1 280117040 280119287 CTGATGGACTACAGTAAAGGG 58 280119327 280119347 CACGTATAGTTCCACCATCTC 58 NA Rattus norvegicus 81 Eno4 ENSRNOG00000018310 ENSRNOT00000065289 3 1 1 80 1 280106892 280106910 CAGTTCATCACAGAGGAGC 58 280106953 280111170 TTCAAAGAAGATCCTGAGCC 58 NA Rattus norvegicus 81 Aatf ENSRNOG00000002778 ENSRNOT00000000258 3 1 1 81 10 71835957 71836461 GTTCATCGGACAATGAAATACC 58 71835897 71835915 ACATCTTCTGAGAGCTCCT 57 NA Rattus norvegicus 81 AABR07009931.1 ENSRNOG00000011640 ENSRNOT00000015479 1 1 1 60 2 117666604 117666622 ACCCTGAAATACCCTTGGA 58 117666562 117666580 GCATTGGCTATCCCATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vegfc ENSRNOG00000011416 ENSRNOT00000015529 3 1 1 81 16 40440708 40447661 AAACATGCAGCTGTTACAGAC 60 40440647 40440669 CACACCTCTTCACTAAATGACAG 60 NA Rattus norvegicus 81 Susd5 ENSRNOG00000026951 ENSRNOT00000028675 3 1 1 87 8 122350838 122367093 AGCCTGTGGGAAAGATGAG 59 122367142 122367162 CATGAGTTCCCTGAATGACAC 59 NA Rattus norvegicus 81 Hrh2 ENSRNOG00000018260 ENSRNOT00000024580 1 1 1 88 17 10930496 10952394 AGCACCAGCTTCTATGACC 60 10930426 10930444 CTTCTCCATGGCTGGTACC 60 NA InUTR Rattus norvegicus 81 Ly6g6e ENSRNOG00000027157 ENSRNOT00000037482 1 1 1 118 20 5068172 5068190 GAGTGTCGGGAAGATGAGG 60 5068368 5068386 GTAGTATGGCCCAGCAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Sec61b ENSRNOG00000006345 ENSRNOT00000008329 1 1 1 60 5 63197413 63197434 CGATTCTACACAGAAGATTCCC 59 63200283 63200301 TCATCACCAGTACTGGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000078030 3 1 2 89 1 215536557 215536575 CTCAACTTCTGTTGCCTGG 59 215515825 215536504 CAGACAGCCTTTCTTCCCT 59 NA Rattus norvegicus 81 Apcdd1 ENSRNOG00000043304 ENSRNOT00000067554 1 1 1 106 18 58285699 58285717 TAGAGGAGCTCTTCCTGGG 60 58285787 58297155 ATGGTTGTGATTCTTGGCG 59 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 1 2 2 80 10 88282226 88282428 CTATGCAGATGACATGGATGC 59 88282166 88282184 TCCATGTGCATATCCAGGG 59 NA Rattus norvegicus 81 Nkx2-5 ENSRNOG00000020747 ENSRNOT00000028155 1 1 1 137 10 16636403 16637854 GATAAGAAAGAGCTGTGCGC 60 16637954 16637972 CTCCAGCTCATAGACCTGC 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 1 4 4 80 4 165310581 165310601 GGGATGAATGTAAACAGACCT 58 165307518 165310539 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050576 ENSRNOT00000072148 2 1 1 60 5 121308448 121308466 TCGTTCTAGACCAACTGCC 59 121308487 121308508 TCAATTCCGTCATACTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910470 ENSRNOG00000050576 ENSRNOT00000072148 3 1 1 60 5 121308462 121308480 CTGCCAACAAATCCCTCTC 59 121308501 121308522 GTCCATAGACACAGTCAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glud1 ENSRNOG00000057367 ENSRNOT00000083446 1 1 1 80 16 10691552 10691572 AGAGAAAGTTTGGAAAGCACG 60 10691613 10692778 CAGATGCACCCGATATTCTG 59 NA Rattus norvegicus 81 Tshb ENSRNOG00000016793 ENSRNOT00000022575 1 1 1 80 2 205208114 205208510 ATGACACGGGATATCAATGG 58 205208053 205208074 GGTGAAGTCTCTGTATGTACAG 58 NA Rattus norvegicus 81 Ipcef1 ENSRNOG00000018163 ENSRNOT00000024460 3 1 1 82 1 43617385 43637236 ATGGCAATCAATTGGCAGAG 59 43617322 43617341 TTTCTTGCATTCAGAGGCTC 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 2 2 2 80 18 28423981 28423999 TTTGCGTTTCTGGTTCCAG 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Zfp353 ENSRNOG00000050804 ENSRNOT00000072732 2 1 1 60 5 108746739 108746759 ACTCTCAGATACCAAACTCCA 58 108746699 108746720 GATGTTGTTCTCTTAGTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065814.2 ENSRNOG00000042319 ENSRNOT00000066416 3 1 1 81 6 142353053 142353073 GCATGGTCTACCTACAAATGG 59 142352861 142353011 GTCCAGATACAATGTGCTGC 59 NA Rattus norvegicus 81 Nhlh2 ENSRNOG00000054375 ENSRNOT00000083374 2 1 1 111 2 204427687 204427705 CTTCCTCTGCTTCCGAGTC 60 204427780 204428203 CACTCTTAGGGCTTGTGGT 59 NA InUTR Rattus norvegicus 81 Kif22 ENSRNOG00000020281 ENSRNOT00000027525 3 1 1 80 1 198466963 198467057 CTTGGTCAAGGTAGAACAGC 59 198466902 198466924 CCAGCCAAATCAATAAGGTAGAG 59 NA Rattus norvegicus 81 Ly6g6f ENSRNOG00000027225 ENSRNOT00000037613 3 1 1 80 20 5074454 5074474 CTGGTGTACTGTTATGGACCA 60 5074304 5074412 AACTGGGATCCTTTGAGCA 59 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 2 2 2 80 1 280130924 280146360 GTTACCTTTCAGCCTCCCA 59 280130862 280130880 AACTACAACCGGCTCAGAC 60 NA Rattus norvegicus 81 RGD1565159 ENSRNOG00000048753 ENSRNOT00000049363 1 1 1 60 2 53717889 53717910 GCAAGTTAAAGGCAAGATTCTG 59 53717850 53717868 GTGCTTGATGTGCTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027088.1 ENSRNOG00000046068 ENSRNOT00000075373 2 1 1 80 17 14087378 14091520 GACAGAGTTGCAACATCTCG 59 14087317 14087335 TTCAAACATGTGCTCCACC 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845,ENSRNOT00000006144 2 2 2 80 6 144110320 144110340 AATGGTTTAGAGGCTACTGGG 60 144109787 144110283 CTCAAAGTCGTCTTCATAATCCAC 60 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000084588,ENSRNOT00000068407 2 2 2 80 4 156779842 156780940 CAACGGCTTACAGTTTCCT 58 156780984 156781002 ATCATCCGTCTTCGAATCC 57 NA Rattus norvegicus 81 Egfem1 ENSRNOG00000023908 ENSRNOT00000039603 1 1 1 80 2 117109572 117109591 TTAGGAGGCTATGAGTGCAG 59 117109633 117116051 TTCATCGTCTAAAGCGTCAC 58 NA Rattus norvegicus 81 Gdap1 ENSRNOG00000005850 ENSRNOT00000007994 3 1 1 80 5 1332074 1333156 AATGAAGAAACTCCAGATGAGG 58 1332015 1332034 GACAGCCAATGAGACATCTG 59 NA Rattus norvegicus 81 Tmem88 ENSRNOG00000009870 ENSRNOT00000013439 1 1 1 102 10 56000075 56000093 CAATCTCCTCTTGTTGGCG 59 55999862 56000009 CTGAGAACGCAGAAACTGG 59 NA Rattus norvegicus 81 Orai1 ENSRNOG00000001336 ENSRNOT00000001806 1 1 1 179 12 38995299 38995323 GGACTGGACAGAGTTACTCC 59 38982632 38982650 AGTCATGATCCGTGTCCAG 59 NA Rattus norvegicus 81 Sf3b6 ENSRNOG00000046172 ENSRNOT00000075790 3 1 1 83 6 29991545 29991568 ACCTATCAGGGACGTTGTG 59 29991372 29991391 TCTTGGTGTCCATCTTCTGG 60 NA Rattus norvegicus 81 RGD1565117 ENSRNOG00000033161 ENSRNOT00000045687 3 1 1 60 7 70445511 70445531 TATCTGAAGCAAGTGTCTTCG 58 70445552 70445571 TAGTGCAGCTTGACAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g7 ENSRNOG00000025691 ENSRNOT00000038222 1 1 1 80 9 19941526 19944192 GAAGACCAGAGATTCAGATGTG 59 19941467 19941485 AGGAACTCTGGAGTACAGC 58 NA Rattus norvegicus 81 AABR07065651.2 ENSRNOG00000047641 ENSRNOT00000075175 1 1 1 80 6 138764647 138764666 CCCTATACCTGCAAATGGAC 58 138764543 138764606 GGTCACTAGTATCTGTGTCTG 57 NA Rattus norvegicus 81 Uqcrh ENSRNOG00000012550 ENSRNOT00000016751 1 1 1 92 5 134921965 134922688 AGAGGAAGAATTAGTGGACCC 59 134921893 134921911 CACGACTCTAGTCGTTCCC 60 NA Rattus norvegicus 81 Tmem109 ENSRNOG00000028017 ENSRNOT00000038807 2 1 1 88 1 226927093 226927112 TCTCATCAGCCATCTCTGTG 59 226926585 226927042 GAGTTGTTCACCATCCAGC 59 NA Rattus norvegicus 81 Pigk ENSRNOG00000042359 ENSRNOT00000014725 2 1 1 80 2 257920025 257920044 CCGACATGTTGCAAATACTC 58 257920085 257937511 AGCATAAGGACAATGTGACTG 58 NA Rattus norvegicus 81 Vom2r70 ENSRNOG00000049387 ENSRNOT00000074712 1 1 1 80 14 314845 314866 ATCAGAAACAAACAGCAGACTG 60 314905 337279 CCATATCTGCTGTCTCATTGG 59 NA Rattus norvegicus 81 Rap2b ENSRNOG00000014420 ENSRNOT00000019340 1 1 1 60 2 151685333 151685351 TCATCGAGAAGTACGACCC 59 151685375 151685393 GAATCCACCTCGATCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rap2b ENSRNOG00000014420 ENSRNOT00000019340 3 1 1 60 2 151685672 151685690 CCTTCATGGAAACATCGGC 59 151685713 151685732 ACGATCTCTGCGAATAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548,ENSRNOT00000079783 3 2 2 80 19 57474285 57475785 CTGAGAAGATTCTGAGCCAG 58 57474224 57474242 CATTGGTGCTGTCATTGTC 57 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000048801 ENSRNOT00000047421 1 1 1 60 10 61088273 61088292 ACTTCTACTGTGACCTTCCC 59 61088232 61088250 TCATTGATCTGGGTGCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a4 ENSRNOG00000017226 ENSRNOT00000023256 3 1 1 80 10 56556999 56557018 GTATTCTCAGCTGTGCTTGG 59 56556846 56556959 CTGTTCAATCACTTTCTGTGGG 60 NA Rattus norvegicus 81 Rfxap ENSRNOG00000028382 ENSRNOT00000000101 1 1 1 86 2 144215271 144217039 AAACTGGAGGAAAGCACAG 58 144215203 144215221 TAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 LOC100359825 ENSRNOG00000033058 ENSRNOT00000043587 3 1 1 60 6 95826632 95826652 AATTGAAGGTGTTTATGCCCG 60 95826674 95826692 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx55 ENSRNOG00000001043 ENSRNOT00000001387 1 1 1 80 12 37455178 37455196 ATGAAAGCCTTCGTGTCCT 59 37454242 37455137 AAAGTCAAGATCCTTCAACCTG 59 NA Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000073905 2 1 2 61 7 120144798 120144817 CATTGCAGACTTGATGGAGG 59 120144843 120144861 CTACGGGATCAGGGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Mrps26 ENSRNOG00000021224 ENSRNOT00000028828 2 1 1 87 3 123093950 123094494 TTCTCAAACTGCAGGAGGA 59 123094545 123094563 CTCTTCGGAGAGTCCAAGG 59 NA Rattus norvegicus 81 Olr1555 ENSRNOG00000058137 ENSRNOT00000086976 3 1 1 60 11 43594423 43594442 TATCATCCACAGTGACACCA 59 43594382 43594401 GAAATCACCTTGCCCTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 3 2 2 86 5 59148107 59148201 CAGATCTGTAAAGAGGTGCAG 59 59148041 59148060 CACTCTGTAGTCATGGTGTG 58 NA Rattus norvegicus 81 Eef1b2 ENSRNOG00000024186 ENSRNOT00000034740 2 1 1 80 9 69955809 69955828 GACATGACGAAACTTGAGGA 58 69955869 69955986 CACTGGAACCAATTTAGAGGA 58 NA Rattus norvegicus 81 Tnni3k ENSRNOG00000028225 ENSRNOT00000030341 3 1 1 80 2 261230175 261230297 GTGGCGATCAAACGATACC 59 261230113 261230131 GAGAATGGACACCTCTCGG 60 NA Rattus norvegicus 81 Ncoa2 ENSRNOG00000007975 ENSRNOT00000011026 3 1 1 80 5 5675078 5675097 CCAGGAATGATGGGTAACCA 60 5675139 5677691 GCTACTGCCAATCATTCCTG 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 3 2 2 80 1 133375604 133375626 GCTACTCTTTCTGTACAACTTCC 59 133372430 133375564 ATGTCTGTGCTATCCTGGC 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713,ENSRNOT00000065521 2 2 2 86 13 69778366 69780803 ACCCTAAGTACTTAGAGATGATGG 59 69778303 69778323 CCATGAGATCCAGGTAAACCA 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000042977 1 1 2 82 1 280383829 280383847 GAAGCAGAGGAGAACCCTG 60 280383893 280387010 CCTTCAACCACTGTCAGGT 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000064022 1 1 2 81 1 280383892 280396916 AACCTGACAGGTTATGGCC 60 280396957 280396979 GGATTCCAAAGAGTGCATATAGC 60 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 1 2 2 80 2 18408273 18408294 TGGAAGATATAAGTGTGAGGTG 57 18408334 18411766 AACACCACACCTTGTAACTC 58 NA Rattus norvegicus 81 Rdh10 ENSRNOG00000006681 ENSRNOT00000009096 3 1 1 80 5 2607780 2608691 TGCTGGAGTTGAGGATTACTG 60 2607720 2607738 GCAGCCTTCAGTTCATGAC 59 NA Rattus norvegicus 81 Ssbp2 ENSRNOG00000016213 ENSRNOT00000021857 1 1 1 80 2 20664891 20664909 GACATCCAAATATGGGCGG 59 20664952 20669144 CTCCATAGTTCTGTGGTCCT 59 NA Rattus norvegicus 81 Rbm18 ENSRNOG00000006763 ENSRNOT00000009706 3 1 1 80 3 15448914 15448934 GATAAGATCCTTCCCATCAGC 58 15445936 15448874 TATCTTTGCAGTGACACTGAG 58 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450,ENSRNOT00000067176 2 3 3 82 12 41205372 41205390 AGAGGAACTTCCTGAAGCA 58 41205435 41208790 CTCCTTACACAGTTGGTACC 58 NA Rattus norvegicus 81 Aldh1a3 ENSRNOG00000052070 ENSRNOT00000085158 2 1 1 80 1 127322233 127330017 TATCCTGGCAACTCTAGAGAC 59 127322173 127322191 TTAATACAGCCCTCCAGGT 58 NA Rattus norvegicus 81 Osbpl10 ENSRNOG00000011435 ENSRNOT00000015643 1 1 1 80 8 123270681 123278196 CTTAACCAAGGTGGTGCTC 59 123278240 123278258 GGGTGTGCCATAAAGTCTG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 1 3 3 80 13 71112460 71112478 GTCGCACAAATCAGACTCC 59 71112521 71113429 GTGGAGAGTCTCTTGAGAGC 60 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 2 2 2 80 3 61441745 61441763 GCTCAAGTTCAACTGGTCC 59 61440229 61441703 GAGGTATTGTTCCTCCTTCAG 58 NA Rattus norvegicus 81 Nbas ENSRNOG00000024503 ENSRNOT00000009779 3 1 1 80 6 38667722 38671799 CCTTGCAGAAACCCTTGAG 59 38671841 38671861 ACTTCCCACTGTGAGATACTG 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 3 2 2 80 8 19888838 19888857 CACCTAGAGCAAGAAGAGGA 59 19888897 19890698 AGATGTAGTTTCCCAATCTGGA 59 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 2 1 2 87 2 148621024 148621042 GGAATCAAAGAGCCTCTGG 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506,ENSRNOT00000039993 1 2 2 80 14 820230 820251 ATCAGAAACAAACAGCAGACTG 60 820290 821482 CCATATCTGCTGTCTCATTGG 59 NA Rattus norvegicus 81 Vkorc1 ENSRNOG00000050828 ENSRNOT00000073596 3 1 1 82 1 199339211 199340075 CTGTTGTTAGGTTGCTTGAGG 60 199339149 199339167 TACAGAGAACCAGCGACAG 59 NA Rattus norvegicus 81 Psmg4 ENSRNOG00000039265 ENSRNOT00000060132 2 1 1 116 17 31411734 31411752 GCTCGTCCACTTTCATGTC 59 31408981 31411654 ACAGGGATGGAATCGAAGC 60 NA Rattus norvegicus 81 Opn1mw ENSRNOG00000051529 ENSRNOT00000083147 3 1 1 80 X 156589857 156589878 ACTGGACCATTATGAGGATAGC 60 156584617 156589816 CCTTCAAAGGGACCTCTGG 60 NA Rattus norvegicus 81 Rbm11 ENSRNOG00000029147 ENSRNOT00000047240 1 1 1 80 11 14011011 14011029 TTCTCGCTCTTCTGAACCA 59 14011071 14011611 ATTTCATCGTTCCTGAAGCTG 59 NA Rattus norvegicus 81 Fam114a1 ENSRNOG00000026504 ENSRNOT00000002883 3 1 1 80 14 44953220 44953240 GAAAGGAAGAGAAAGCTGAGG 59 44952099 44953180 ACATGTACACCTCCTCTACAG 59 NA Rattus norvegicus 81 LOC100911617 ENSRNOG00000048996 ENSRNOT00000075181 2 1 1 60 2 213420761 213420779 TTTGCCATCTGGTTTCAGG 58 213420719 213420737 ACAGCACCAGAGGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365287 ENSRNOG00000012345 ENSRNOT00000016461 1 1 1 60 1 135226753 135226771 AAGGACGATGAAGTTCAGG 57 135226711 135226729 TCACTTTGCCAATCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irak1 ENSRNOG00000060869 ENSRNOT00000092207 3 1 1 80 X 156718191 156718434 AGCTATCAAGGTTTCGTCAC 58 156718475 156718495 CATAAACAAGGCAGTAGAAGC 57 NA Rattus norvegicus 81 Olr1012 ENSRNOG00000054207 ENSRNOT00000074567 3 1 1 60 7 7069537 7069556 GTGGCTCCTATGATGAATCC 58 7069579 7069597 AGGCTTGCTTTACTTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498705 ENSRNOG00000033993 ENSRNOT00000044670 2 1 1 91 17 9972918 9975346 AGTGAAGAGGGAGAACTCCT 60 9975400 9975418 CTAAGTTCACAGCCCTGCT 60 NA Rattus norvegicus 81 LOC100359668 ENSRNOG00000033776 ENSRNOT00000042177 1 1 1 60 6 76652359 76652378 GTGACTTCTTGGAAAGCCAC 60 76652318 76652337 TTGCCCATCTTCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687609 ENSRNOG00000042607 ENSRNOT00000064390 1 1 1 87 12 38880583 38880859 CATTTCCCGAGCACTATGC 59 38880910 38880928 TAGAGGTTCAGGGTCACCT 59 NA Rattus norvegicus 81 Dusp22 ENSRNOG00000056376 ENSRNOT00000090946 1 1 1 80 17 35025621 35025641 AACAATTGAGCAGGAACAAGG 60 35002992 35025581 GGTATTTAACTCCCTCCAGCA 60 NA Rattus norvegicus 81 Krtap1-1 ENSRNOG00000012955 ENSRNOT00000037980 1 1 1 93 10 87503077 87503095 CTACTGTGGACAGTCCTGC 60 87503002 87503020 TTAACAGCTGGGCTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 1 2 2 80 11 17079699 17079717 AAGAGACGAGCTCTGTTCC 59 17078657 17079655 GCGTCATCGAATTCAGCTC 60 NA Rattus norvegicus 81 Fancd2os ENSRNOG00000010177 ENSRNOT00000013503 2 1 1 96 4 145553530 145553910 GTCACACTGACTGTCAATGG 59 145553453 145553472 AGGAGTAGGTGTTGTATGCC 59 NA InUTR Rattus norvegicus 81 Ric3 ENSRNOG00000014691 ENSRNOT00000020137 1 1 1 80 1 173642897 173642918 AAGAAGGCAAGTTCATTGACAC 60 173634033 173642856 CTGGGTAACCTTCCCAGTC 59 NA Rattus norvegicus 81 Tbxas1 ENSRNOG00000007918 ENSRNOT00000010796 1 1 1 80 4 66846110 66846552 AGACTCAGGTTCCACTTCAG 59 66846595 66846613 AGCGTGACACAATCTTGAC 59 NA Rattus norvegicus 81 Nup153 ENSRNOG00000001456 ENSRNOT00000001979 3 1 1 80 17 18398532 18401748 GAAACCAGGTTTGGTATCTGC 60 18401788 18401808 TTGTCCAATCCTAAACAGCCT 60 NA Rattus norvegicus 81 LOC690335 ENSRNOG00000032771 ENSRNOT00000050217 3 1 1 60 6 95890010 95890029 GGATGTTAAGGCCAACAAGC 60 95889969 95889993 GTCAATGTCATAGAGTTTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acbd6 ENSRNOG00000003550 ENSRNOT00000004772 3 1 1 80 13 73255329 73265728 TGACAGATGAAGAGGGCAG 59 73265770 73265790 ACTGTAGCAAGACTTTCACCA 60 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 3 2 2 80 10 58368975 58370203 ACTGGAAGAGCAAAGAATGG 58 58370246 58370264 ACTTGAGCCAGTCTAGGAC 58 NA Rattus norvegicus 81 Rn60_1_1368.1 ENSRNOG00000051333 ENSRNOT00000076462 3 1 1 60 1 135713020 135713040 AAGAAACAACGGGTGATTCAG 59 135713062 135713080 AACCTGGACATTTCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Onecut1 ENSRNOG00000008095 ENSRNOT00000032280 2 1 1 99 8 81767300 81767318 AGACTTTCCGGAGGATGTG 59 81792581 81792599 CCGTGTTCTTGCTCTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Spsb2 ENSRNOG00000047113 ENSRNOT00000072086 2 1 1 94 9 20217610 20217874 AAAGAAGAGCGGAGGAACC 60 20217534 20217553 ACTGGATATTTGACCCAGCC 60 NA Rattus norvegicus 81 Cyp4f4 ENSRNOG00000032895 ENSRNOT00000041034 3 1 1 80 7 14901786 14901804 GATATCCTCAAGGCCAAGG 57 14901846 14903756 CTTTCCATCTTCATCCTTGGT 58 NA Rattus norvegicus 81 Hoxc8 ENSRNOG00000028619 ENSRNOT00000031404 2 1 1 60 7 144605482 144605502 CATGTTTCCATGGATGAGACC 59 144606864 144606882 GCTGTAAGTTTGTCGTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Mir3561 ENSRNOG00000045781 ENSRNOT00000071252 2 1 1 60 7 26427793 26427812 ACCTGAGACTGTGTCAATCC 60 26427752 26427770 ACCCTGGATAGACACAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rwdd2b ENSRNOG00000001599 ENSRNOT00000050902 2 1 1 89 11 27089149 27089168 GAGAAGAGGACAATGGAGGG 60 27088921 27089097 AAACATCACCATTGCTGCC 59 NA Rattus norvegicus 81 Tmem205 ENSRNOG00000011747 ENSRNOT00000015684 1 1 1 80 8 22936445 22936464 CATCAACCTCTGCATCTTGG 59 22932506 22936402 AGCAGTAGGGTAAGCTGAC 59 NA Rattus norvegicus 81 Rn60_20_0064.7 ENSRNOG00000052710 ENSRNOT00000089737 3 1 1 60 20 4245527 4245545 TGAGTGTGGAGAACATGGA 58 4245485 4245506 AATACTGCTTGTGAGAATCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654,ENSRNOT00000065402 2 2 2 80 5 14282965 14282983 CATGCACCATGAAGACCAG 59 14262688 14282921 AGATACTCCCAGTTGTGCA 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654,ENSRNOT00000065402 3 2 2 80 5 14333812 14342871 CCCTTTACTGTTCATATGGCAG 59 14333753 14333773 TAAGTCACTGCCTTCCATGAG 60 NA Rattus norvegicus 81 AABR07005027.1 ENSRNOG00000050468 ENSRNOT00000071333 2 1 1 113 1 175586383 175586401 GTCTGAGCCTCCTTACCAG 59 175586243 175586309 CCTCTAGAATCTCGTTTCTTGG 58 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 1 2 2 81 4 68640022 68640511 CATACCAAATGGGTGACGTC 59 68640555 68640573 TAAGCCACATCTCTGAGGC 59 NA Rattus norvegicus 81 Ilkap ENSRNOG00000020115 ENSRNOT00000027295 3 1 1 80 9 98522156 98522175 ATTCGAGCCTCGAAATTTGC 60 98521528 98522118 CACACTGATTACATCTCCTTTAGG 59 NA Rattus norvegicus 81 Sec23ip ENSRNOG00000020411 ENSRNOT00000027665 3 1 1 80 1 200204416 200205006 GTCACTTGTGCTATTGGGAG 59 200205046 200205067 CTGGACTAATGTTCATTGTCCG 60 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000078718,ENSRNOT00000012354 1 2 2 80 3 21652713 21652855 TAATCCAGATGCTGTTTCACC 58 21652653 21652671 ACAAGACCATGAACCACTG 58 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755,ENSRNOT00000077715 3 2 2 80 6 98462212 98462232 CTAGTGACAGCAATGAATTCG 58 98454370 98462172 CATATACAAGCTGTAGGTGGG 58 NA Rattus norvegicus 81 Cxcl14 ENSRNOG00000011984 ENSRNOT00000016009 2 1 1 80 17 9110244 9113763 GGAGAAGATGGTTATCATAACCAC 59 9113801 9113820 CTTTGCAGCTTAGGATGCAG 60 NA Rattus norvegicus 81 Vill ENSRNOG00000011446 ENSRNOT00000015888 2 1 1 80 8 127739767 127739943 GGATTACTGAGAACCTAAAGATGC 59 127739981 127740000 GGACAACATAGCAGCATTCC 59 NA Rattus norvegicus 81 Pdilt ENSRNOG00000015368 ENSRNOT00000020817 3 1 1 80 1 189221266 189221284 TTGTTCAACAACAGCAACG 58 189220130 189221224 CTCTAAATCCTGGAAGAAGCC 58 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675,ENSRNOT00000066545 1 2 2 80 6 147121629 147121651 GATCTCTGGAAACATAGACACTC 59 147121051 147121593 CATCCAATATGACTCTCACAGAC 59 NA Rattus norvegicus 81 Fktn ENSRNOG00000028129 ENSRNOT00000036799 2 1 1 80 5 70547446 70552383 TTCCTTCAGCAGTACGTCG 60 70552426 70552445 CGCTAGTTGCAGTAACTCCT 60 NA Rattus norvegicus 81 Bcl3 ENSRNOG00000043416 ENSRNOT00000025913 1 1 1 81 1 80733423 80733630 CATCGATGCAGTGGATATTAAGAG 60 80733365 80733383 CAGTTGCACCATGTTCAGG 60 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 3 2 2 81 4 123619398 123619416 TATGCTGTGCAAATCCTGC 59 123619461 123620505 CCTGCTCATCTGAGTTGTC 58 NA Rattus norvegicus 81 Ctla2a ENSRNOG00000039971 ENSRNOT00000061422 1 1 1 80 17 4170762 4170782 CAATGCAGACTATAAGCAGGG 59 4170818 4170943 CTGAATTCTTCTGTAGTCAAGTCAC 60 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 3 2 2 80 10 56860217 56861089 GAAAGAACTCAAGGATGGATGC 60 56860158 56860177 TCTCCTCGGATCACATTAGC 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659,ENSRNOT00000046622 1 2 4 80 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353573 167353593 CATCAACAGAAGGGAGATCTG 58 NA Rattus norvegicus 81 Prss56 ENSRNOG00000029865 ENSRNOT00000065805 2 1 1 94 9 94279908 94280270 CATGAATGCCAAGGACCTG 59 94280419 94280437 CTTTGGCGTCTTTCTCCAC 59 NA Rattus norvegicus 81 Atp6v1d ENSRNOG00000009080 ENSRNOT00000012101 2 1 1 80 6 102038012 102038033 GAGCAAAGAAAGACAATGTAGC 58 102036099 102037382 TTAGTTCATAGCTGTCAGTTCC 58 NA Rattus norvegicus 81 Ly6g5c ENSRNOG00000000846 ENSRNOT00000001122 2 1 1 80 20 5102497 5104102 CACATAAAGAACAGCAGCG 57 5104145 5104164 AGTATAGGAGCAATCCACCA 58 NA Rattus norvegicus 81 Olr1398 ENSRNOG00000045940 ENSRNOT00000041540 1 1 1 60 10 34744686 34744706 GTAGCACTAATTCTAGGCACC 58 34744727 34744746 TTGACTTGATCTTCAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683038 ENSRNOG00000033014 ENSRNOT00000046081 3 1 1 90 16 12537800 12537948 CAGACAAGAGTGAGAATGATTCTG 60 12537733 12537751 CCTAGCTTAACCACAGCCT 59 NA Rattus norvegicus 81 Maf1 ENSRNOG00000013514 ENSRNOT00000018240 3 1 1 81 7 117419602 117419703 TGACATCTACAGCTATAACCCA 59 117419740 117419763 GAAGAAGTAGTTGAATGACCAGAG 59 NA Rattus norvegicus 81 Ythdf3 ENSRNOG00000010084 ENSRNOT00000067556 2 1 1 81 2 100683770 100696660 CCAGACAAATCAGAATAACAGC 58 100696701 100696720 TGGAAATCCAATGGATGGAG 58 NA Rattus norvegicus 81 Mcm3 ENSRNOG00000012543 ENSRNOT00000017081 3 1 1 80 9 26916773 26916792 GAGGATGAATCAGACCTGGA 59 26916269 26916730 AGTCTTCCTCCTCTTCCGA 59 NA Rattus norvegicus 81 Olr1486 ENSRNOG00000055055 ENSRNOT00000083439 1 1 1 60 10 60308488 60308508 TCTACTGTGAAGAAGACTGCC 60 60308448 60308466 GATTCAGCATGGAGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Soat1 ENSRNOG00000004111 ENSRNOT00000005677 3 1 1 80 13 74070147 74070166 TCAAGATCTGCTGAGAATCC 57 74062313 74070107 CATGGTAATGTGACCATTTCTG 58 NA Rattus norvegicus 81 Ubap1 ENSRNOG00000012004 ENSRNOT00000063849 1 1 1 80 5 57776510 57776531 GGGCTACTCATATGATTGTGTC 59 57776568 57777296 GCAAAGAGATAGTCGAGAATCTG 59 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 2 3 3 83 7 144941888 144941906 CTAAGCGTCTGCTCTACTG 58 144941492 144941844 GCTTAGTACCTTTGTTATGTGC 58 NA Rattus norvegicus 81 Fam60a ENSRNOG00000046048 ENSRNOT00000075027 2 1 1 80 16 18450947 18450966 GACTCTGTCTGGAAACAGGA 59 18451009 18453297 GCATCAGAATCTGCTGTGG 59 NA Rattus norvegicus 81 Mir26b ENSRNOG00000035608 ENSRNOT00000053731 1 1 1 60 9 81675285 81675308 CCAGTTCAAGTAATTCAGGATAGG 59 81675326 81675345 AGCCAAGTAATGGAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500350 ENSRNOG00000030158 ENSRNOT00000040508 1 1 1 80 4 170347793 170347813 CTTTCGTACCAAAGAGAACGG 59 170347855 170350167 TAGGCAGTGATAGCACACG 60 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336,ENSRNOT00000089686 1 2 2 112 8 57949085 57949103 CATCATGAGGGAGGAGAGC 59 57953885 57953904 TAGATTGTTCCTCAGCCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1560291 ENSRNOG00000009241 ENSRNOT00000029672 2 1 1 80 7 17515837 17515859 CTTGGACAAAGGGATATACTCAC 59 17505972 17515801 CAGTTGTCCAACACTAAGTTCTC 60 NA Rattus norvegicus 81 Efhc1 ENSRNOG00000042729 ENSRNOT00000017393 3 1 1 80 9 27085385 27085405 TTGGAATGTCCGATTTACCAC 59 27085444 27087353 CATTATAAGGAGGCAACTCCTG 59 NA Rattus norvegicus 81 Sfrp5 ENSRNOG00000014940 ENSRNOT00000020182 3 1 1 81 1 261445859 261445877 GTTTCCTCTGGACAACGAC 59 261444076 261445815 ACAGATCTTGGTCACTGGAG 59 NA Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 1 1 1 61 9 92925115 92927120 CTTCTTCCTTGCTCAGCTG 59 92927145 92927163 AGTCTTCGTAGAGCACACC 59 NA DesignNoJunction Rattus norvegicus 81 Inhbc ENSRNOG00000007700 ENSRNOT00000010240 2 1 1 61 7 70661092 70661115 CATGACCAGAGACAAGAATATGAG 59 70649565 70661072 TTGATGTTGGAGAGGCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000059086 2 1 2 105 8 55504520 55504902 GACTCTTTGTCCCTACCCAG 60 55504969 55504988 GGTACTCAGTTTCTCGTGCT 60 NA InUTR Rattus norvegicus 81 Stat3 ENSRNOG00000019742 ENSRNOT00000026760 2 1 1 80 10 88810100 88810119 AAGTGGTGGAGAATCTCCAG 59 88809738 88810059 CATTCAGATCCTGCATGTCTC 59 NA Rattus norvegicus 81 Olr1362 ENSRNOG00000047553 ENSRNOT00000060995 3 1 1 60 10 12369782 12369802 GAACCCTTTCATCTACAGCCT 60 12369742 12369761 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir336 ENSRNOG00000035459 ENSRNOT00000053582 2 1 1 60 10 35349772 35349794 CACCCTTCCATATCTAGTCTCTG 60 35349814 35349832 CCTCACATCCCTTCATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501180 ENSRNOG00000018559 ENSRNOT00000025029 1 1 1 60 9 93445161 93445179 CCTACCTGATGAAGTCCCA 58 93445202 93445221 GTCTACATCCTCTTCAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubl4a ENSRNOG00000053061 ENSRNOT00000091810 2 1 1 80 X 156341249 156341268 CTCGGATAAGCTGAATGTCC 58 156341311 156341570 GACAGTCGCTTCTCATCTG 58 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542,ENSRNOT00000040187 1 2 2 80 2 136997592 136998118 GAGTTAACAGTTCTGCATTCCA 59 136998159 136998177 TGTCTCCCTGTTCACTGTC 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 2 5 5 80 11 27865914 27867935 ACTATTCTGGAAGAGCCCT 57 27865852 27865872 GCAATATCCTTCAAACCTGTC 57 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388,ENSRNOT00000088223,ENSRNOT00000074793 2 3 3 81 7 135560603 135560623 AACAGAGTCAGAATGTTCTGG 58 135559393 135560562 CCACAAATGTCTTCCCTAGTG 59 NA Rattus norvegicus 81 Pik3c2g ENSRNOG00000034228 ENSRNOT00000041499 3 1 1 80 4 174017144 174017165 AAATACGTACACGACAATCTCC 59 174017204 174032288 ACTCTGCTTTATCTTCGTGGT 60 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151,ENSRNOT00000051612 3 2 2 80 8 91380665 91380686 ATACCGAGATTCGATTATGCCT 59 91380725 91381796 GCTTGAATGGGCTTTAAACCT 60 NA Rattus norvegicus 81 Rgma ENSRNOG00000012874 ENSRNOT00000076446 3 1 1 81 1 134732173 134732192 TAATTACCTGAACGTGCAGG 58 134732236 134740038 GATGATGGTGAGCTTGCTG 59 NA Rattus norvegicus 81 Mirlet7i ENSRNOG00000035642 ENSRNOT00000053765 2 1 1 60 7 66802740 66802761 GTAGTAGTTTGTGCTGTTGGTC 60 66802782 66802800 CTTGCGCAGTTATCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 1 3 3 80 4 165985878 165986734 CTTCTCAACTCTTAGATGTAGAGC 59 165985821 165985840 TTTCATCAGAAGCAGGAGGT 59 NA Rattus norvegicus 81 Grhl3 ENSRNOG00000029427 ENSRNOT00000065247 3 1 1 80 5 153908888 153910566 AAGGAAAGAAGTACTACCACAG 58 153908829 153908848 GAAATTTCATGAGGTGCGTG 58 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000039761 ENSRNOT00000060991 2 1 1 81 10 12467937 12467956 CCCATGTACTTCTTCCTCAG 57 12467604 12467893 GGGATGATGTTGTCTTGGG 58 NA Rattus norvegicus 81 Cxadr ENSRNOG00000001557 ENSRNOT00000050701 3 1 1 80 11 16857091 16857802 GGCTAGCAGAAATGACTTCAC 59 16857844 16857862 GGACTGTGCAACTGTAGGT 60 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 2 2 2 80 1 178637075 178658495 GCTACCGAGTGACACTCTC 60 178658539 178658557 CTTCGCGGTTCTCTTTGAG 59 NA Rattus norvegicus 81 Olr1515 ENSRNOG00000048395 ENSRNOT00000043358 3 1 1 60 10 62427958 62427977 TGTTGGACCTTTACAAACCT 57 62428000 62428018 AGGAGAGCCGGAATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf21 ENSRNOG00000016700 ENSRNOT00000022798 1 1 1 158 1 23907247 23907265 CAAGACTACCCTTCCCTGG 59 23907387 23909033 ATAAAGGGCCAAGTCAGGT 59 NA Rattus norvegicus 81 Fscb ENSRNOG00000032241 ENSRNOT00000046828 1 1 1 60 6 86221767 86221788 TTGACACTATCCTTGATGACTC 58 86221728 86221746 CCAGTAGCCTCTTCAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2r ENSRNOG00000048043 ENSRNOT00000074626 1 1 1 83 2 26122020 26135191 GACAGCCAGAATCTGAGAG 57 26121955 26121973 CTTCACTGGGATTCCTGAG 57 NA Rattus norvegicus 81 Cpz ENSRNOG00000008947 ENSRNOT00000012109 3 1 1 80 14 80413417 80415754 TGAACTGATGGAGCCTGAG 59 80415795 80415816 AGGTAGATGAGTATTTCCCGTC 59 NA Rattus norvegicus 81 Bhmt2 ENSRNOG00000040120 ENSRNOT00000061708 1 1 1 80 2 23285505 23289221 GAGTCAAGAAGGGTATCTTGG 58 23285445 23285465 TTTCCAGAGTGAAGAGAAAGC 58 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076208,ENSRNOT00000055235 2 2 3 116 1 167321101 167321119 TTCTGCTCAAGATCCCTCC 59 167321199 167323702 TTGTCAGACTCAAAGCCAC 58 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240,ENSRNOT00000082462 1 2 2 80 12 38513500 38513520 GGAAGATGAGGAGAAGGAAGG 60 38512882 38513458 GGCTTGTCGATCTCATCCA 60 NA Rattus norvegicus 81 Crb2 ENSRNOG00000025498 ENSRNOT00000037257 1 1 1 80 3 22053731 22053749 AGTGAACTGGAAGCTGGTC 60 22053792 22054267 GAAACAGGGATTGGGATTGC 60 NA Rattus norvegicus 81 AABR07065656.2 ENSRNOG00000047577 ENSRNOT00000072566 2 1 1 119 6 138948240 138948258 CTCTCAAATCCCGACTGAG 57 138948045 138948157 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 Pebp1 ENSRNOG00000001136 ENSRNOT00000001500 3 1 1 85 12 45028174 45028471 CAAATTCAGGGAGTGGCAC 59 45028520 45028538 CCACGTATTCGGAGAGGAC 60 NA Rattus norvegicus 81 AC121204.1 ENSRNOG00000039439 ENSRNOT00000060436 2 1 1 87 5 58967822 58967862 AGAGTCCTCGAAACCATCG 59 58967913 58967931 AGTCCTTGGTGGTGATCTC 59 NA Rattus norvegicus 81 Akap13 ENSRNOG00000010964 ENSRNOT00000014802 2 1 1 80 1 137247254 137247274 ATGTCGCTTTCAGAAGAACAC 59 137247315 137249385 AGACCTGTAACATGTCTGCT 59 NA Rattus norvegicus 81 Mkrn1 ENSRNOG00000009280 ENSRNOT00000013124 3 1 1 80 4 67187875 67188626 AGAGCAAGATCATAAAGTCCTG 58 67187816 67187834 TCTCTTCCACCCAGTACTC 58 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 2 2 2 81 5 135363564 135366388 ATGCAGTAGGTGGATACACG 60 135366430 135366450 GTATCGAAACGCTCTACACAG 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 1 2 2 80 3 35181017 35181036 TTTGCTGTTCTCCTTCAGTC 58 35181078 35190515 TCTTGATGGTCTTTGCTCTC 58 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741,ENSRNOT00000002881 1 2 2 80 11 30388636 30388654 AGTCAAAGCTGAGGAGCTG 60 30387245 30388592 ATGCCTTTCCAATCTGGGT 59 NA Rattus norvegicus 81 C1qtnf2 ENSRNOG00000003870 ENSRNOT00000005161 2 1 1 89 10 29080421 29080439 AATGGTGGGAAGAATGGGT 59 29080492 29083238 CCAGGTGGACCTTCTTCTC 59 NA Rattus norvegicus 81 Vom2r71 ENSRNOG00000046835 ENSRNOT00000049544 1 1 1 80 14 923736 923757 TTCCCATTTGTACCCTAATCCA 59 923792 972860 GTATATCTCTGTCAATAAAGGGAGG 59 NA Rattus norvegicus 81 AABR07011951.1 ENSRNOG00000034093 ENSRNOT00000047593 1 1 1 60 2 177652767 177652786 CATCCTCAATGTTTCTGCTG 57 177652807 177652827 GGTGATGGTGATCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 1 2 2 80 2 22348105 22349767 GGAAGATAGCAACAATGATGG 57 22348045 22348064 ACATCAATGCGATCAATGAC 57 NA Rattus norvegicus 81 Paxbp1 ENSRNOG00000002036 ENSRNOT00000002800 2 1 1 80 11 31194360 31194379 GGATGATGTTGACGTAGCTC 59 31193296 31194319 ATGTTCTCAGCTATCACTGTC 58 NA Rattus norvegicus 81 Sval2 ENSRNOG00000025541 ENSRNOT00000021986 1 1 1 80 4 71342255 71344079 ATGTATGGCGGTGAAAGTC 58 71344123 71344141 AGGCAGGAAGTGTAAATGG 57 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 3 1 1 60 9 37057157 37057178 TTCTCGTTTCAGTGCTTCTG 59 37057201 37057219 CTTGGGATAGTGCTGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Pttg1 ENSRNOG00000003802 ENSRNOT00000005070 3 1 1 80 10 29025437 29025458 GATAAGGATAACGAAGAGCCAG 59 29024552 29025397 ATCTAAGGCTTTGACACCAG 58 NA Rattus norvegicus 81 Vcpip1 ENSRNOG00000006980 ENSRNOT00000009136 3 1 1 81 5 9233991 9243433 GCAACATTAATGGGAGAAGAC 57 9243473 9243494 TATTGTAGAATACACCACCCTG 57 NA Rattus norvegicus 81 LOC100361328 ENSRNOG00000049135 ENSRNOT00000071724 3 1 1 80 9 23321126 23323280 GGTCAGAGATCAGAAGATTCG 58 23323321 23323340 TTGTGAATTGTTGTGGTGTG 58 NA Rattus norvegicus 81 RGD1305807 ENSRNOG00000010497 ENSRNOT00000064113 3 1 1 80 5 61448038 61451927 CTGCCTCTACCTCTTCATCG 60 61451969 61451988 AGCTTGTCTTCAAACACGTC 59 NA Rattus norvegicus 81 Casp14 ENSRNOG00000007352 ENSRNOT00000009643 2 1 1 81 7 13942773 13942791 CTCTGGCTTCATCCAGACC 60 13942834 13943374 TCGGGTGATCTCTTCTAACAG 59 NA Rattus norvegicus 81 Mgarp ENSRNOG00000011923 ENSRNOT00000016475 2 1 1 81 2 140447808 140448441 GGTGGATATTACACTTACAAGGC 59 140447749 140447769 TTGTTTGTTCTTTCGGGTCAG 59 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638,ENSRNOT00000061871 1 2 2 80 6 7973891 7973909 GACACCAACTGTGGAACTG 59 7973953 7975206 ATTGGAAATCTGACGACGG 58 NA Rattus norvegicus 81 Cul5 ENSRNOG00000008039 ENSRNOT00000010956 3 1 1 80 8 58216238 58216256 CCCGACGTCTCATATTGGA 59 58214594 58216196 GCATACCAACTTCTCTTAGCC 59 NA Rattus norvegicus 81 Foxg1 ENSRNOG00000047891 ENSRNOT00000075349 2 1 1 60 6 69971671 69971689 CTGGACATGGGAGATAGGA 58 69971713 69971731 TGTTGATGCTGAACGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh9a1 ENSRNOG00000004027 ENSRNOT00000005611 3 1 1 80 13 85587829 85587847 AGTTTCTGTGTCAGCATCG 58 85587889 85588441 CCATCTCCATGATCTTCATGC 59 NA Rattus norvegicus 81 Cyp4f39 ENSRNOG00000029478 ENSRNOT00000007548 1 1 1 80 7 14512772 14512791 GAATTATCTGCTTGGTCAGC 57 14512830 14513401 GGTAGGGATTGTATACCTTAGAG 57 NA Rattus norvegicus 81 LOC100360238 ENSRNOG00000037801 ENSRNOT00000057396 1 1 1 80 12 40555953 40555972 CCTTCAGAGATCGAGAAGGT 59 40556012 40556057 TTCCTCTTCTTTGATCTCCTCC 59 NA Rattus norvegicus 81 LOC687780 ENSRNOG00000047365 ENSRNOT00000039337 1 1 1 60 6 86131307 86131326 CCAGATCAAAGCTCATGTGG 59 86131349 86131367 AAGCACGACTTGATCTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 2 2 2 80 3 14505744 14505763 AAGGACAAGAAGATGGATGC 58 14505805 14506020 AACCTCTTCGATCACAAAGC 59 NA Rattus norvegicus 81 Rps28 ENSRNOG00000042886 ENSRNOT00000068323 3 1 1 82 7 18683273 18683380 CTGGCTAGGGTAACTAAAGTG 58 18682351 18682372 GTGTCATCCATAAATTCCACTC 57 NA Rattus norvegicus 81 Anapc5 ENSRNOG00000001316 ENSRNOT00000001794 1 1 1 80 12 39211574 39212420 CAAGTGTAGTAGGTCTGTTTCTG 59 39212458 39212478 TGTACAGCTTGAACACTTGAC 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 3 2 2 80 1 89182309 89182329 AGAACATCATCCCATCTTCCA 59 89182119 89182270 TTCCTGTTAACTTCCCATTGAG 58 NA Rattus norvegicus 81 Trio ENSRNOG00000012148 ENSRNOT00000016784 1 1 1 80 2 80569752 80570476 AGAATGTATGGATACCTACCTGTG 60 80569695 80569713 ATGAGCTCCTTGTTGACGA 59 NA Rattus norvegicus 81 Shank3 ENSRNOG00000052296 ENSRNOT00000085191 1 1 1 80 7 130506245 130506264 AGTCTGTAGATGTGGAAGGT 58 130506307 130506407 CGTTCACTCCGTTTACCTC 58 NA Rattus norvegicus 81 Plcz1 ENSRNOG00000008514 ENSRNOT00000011376 1 1 1 80 4 174179882 174180707 CAGAAGCAAGATGGTTTATGTC 58 174179823 174179843 GCAGTTTGTGAGTAATTCCAG 58 NA Rattus norvegicus 81 Olr1108 ENSRNOG00000010804 ENSRNOT00000014337 1 1 1 60 7 140054801 140054819 TCTCTGCTTCTCATCCGTC 59 140054843 140054861 TTTCTTCGCAGACAGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uggt1 ENSRNOG00000014901 ENSRNOT00000020558 2 1 1 80 9 42717619 42717637 CCCTCCTGATGCAAATGAC 59 42715964 42717576 GCCTTCTTCTGAACCTTCAC 59 NA Rattus norvegicus 81 Slc3a1 ENSRNOG00000007006 ENSRNOT00000009581 2 1 1 80 6 8285330 8285349 CCATGTACCAGATCTACCCG 60 8285389 8288813 GCTTCTCTTGGATACCTTTCAG 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 2 3 3 80 8 77272811 77276552 AGACGCAGCAAAGAATGAC 59 77272749 77272768 TCACGAAGACTTTCTCCTGG 60 NA Rattus norvegicus 81 Uap1 ENSRNOG00000002926 ENSRNOT00000058560 3 1 1 80 13 88478551 88480538 CTCTATGGCTCCAGATGGG 59 88478489 88478507 CCTCTTTGCTCCATGTCCT 59 NA Rattus norvegicus 81 RGD1563354 ENSRNOG00000014424 ENSRNOT00000019453 2 1 1 80 3 154692777 154695030 TTCTTCCAGAAGCTGGACC 59 154692715 154692735 CTCAAACTCTTGGATGGAAGC 59 NA Rattus norvegicus 81 Ctr9 ENSRNOG00000017195 ENSRNOT00000023741 1 1 1 80 1 175851297 175853344 GAACTCAACAATAAAGAGGCTG 58 175853381 175853403 GTTGCTAGGATCAATAGTGTAGG 59 NA Rattus norvegicus 81 Msc ENSRNOG00000007540 ENSRNOT00000009908 2 1 1 71 5 3955721 3955739 CGAGGATAGCTATGTGCAC 58 3956508 3956526 GTATCAGAGTCTGGGCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 2 1 1 61 9 97355984 97365588 AGGTCACTTGGTTGCTCTC 60 97365610 97365631 CAGGTTCCACATAGTCAAACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 3 2 2 81 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288259 206288277 ACTCAATACCACCCAGGTC 59 NA Rattus norvegicus 81 Scimp ENSRNOG00000037409 ENSRNOT00000056608 1 1 1 131 10 57422780 57424724 TAGACAAGGCAGGAACTGG 59 57419509 57419527 AAAGGTGAACTCCTGGGTG 60 NA Rattus norvegicus 81 LOC100360604 ENSRNOG00000046349 ENSRNOT00000049571 2 1 1 60 9 66626704 66626723 CATCAAGCACTCAAAGAGCA 59 66626663 66626683 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 2 3 3 90 19 21448285 21455724 CATCACCAGATACACCAGAG 58 21448214 21448232 TTCTGCAACTTTCACTGCA 58 NA Rattus norvegicus 81 Eri3 ENSRNOG00000019381 ENSRNOT00000072492 2 1 1 80 5 136437878 136437900 GTCTACCTTTCACATGTATGTCC 59 136437939 136444203 TGAATGATCCCAGTGAGCTC 60 NA Rattus norvegicus 81 Sox2 ENSRNOG00000012199 ENSRNOT00000016236 3 1 1 250 2 121166621 121166640 ATCCCATCCAAATTAACGCA 58 121166938 121166957 CAATGGACATTTGATTGCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 1 2 2 103 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820730 99821415 TTGGGATCTGCTTCCTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rasgef1c ENSRNOG00000003005 ENSRNOT00000059277 3 1 1 80 10 35455165 35457720 CGAAGACGGTCTGTATTTGG 59 35457760 35457781 CTTAGAGATTTCCACCTCTCCT 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892,ENSRNOT00000048140 3 2 2 80 10 89659200 89659221 GCTTTCCAAAGAAGAGTTTCCA 60 89659257 89661283 AGATCCTCATCTTCTTCATCATCC 60 NA Rattus norvegicus 81 Mrap ENSRNOG00000021524 ENSRNOT00000036027 2 1 1 81 11 30904845 30904867 CCAGCTATGAATATTACCTGGAC 59 30904908 30912731 ACAATGGAGTGCTTGTTGG 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526,ENSRNOT00000016454 2 2 2 80 1 229078900 229078918 AGGAAACTGTTCCCTTCCC 59 229078958 229079822 CATCTCTTGATTGATAGCCTTGG 59 NA Rattus norvegicus 81 Tomm40l ENSRNOG00000003398 ENSRNOT00000004641 1 1 1 80 13 89593163 89593186 TGAATATCGAGGAGATGACTACAC 60 89592811 89593127 GCAACCATAATCACTGATTCCC 60 NA Rattus norvegicus 81 Srsf6 ENSRNOG00000006380 ENSRNOT00000008427 3 1 1 80 3 159307610 159307782 TGGAAGTAGATCCAGATCACG 59 159307822 159307842 ATACTTCGAGATCTACTGCGG 59 NA Rattus norvegicus 81 Tubg2 ENSRNOG00000006494 ENSRNOT00000008576 3 1 1 80 10 89070596 89070891 CAGTCTAGAGGGATTTGTGCT 60 89070932 89070951 AGTCGCTCTAAGAGGTAGGA 59 NA Rattus norvegicus 81 Prss33 ENSRNOG00000029279 ENSRNOT00000034380 3 1 1 138 10 13174489 13174730 CTTAGCCCAGGAGTACCAC 59 13174369 13174387 TTCCTGGTAGCACTATGCG 60 NA Rattus norvegicus 81 Glipr1l2 ENSRNOG00000049053 ENSRNOT00000073180 2 1 1 81 7 54812149 54812168 GTTACTCCATGTGCAAAGGT 59 54811041 54812105 TTGTCAGTGTTCCTCCTGG 59 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 1 2 2 80 11 31653471 31654075 GTATAAACACCACAGTGGCA 58 31654117 31654136 TCAGAACATAGCTGTCACCT 59 NA Rattus norvegicus 81 Arhgap11a ENSRNOG00000008115 ENSRNOT00000010994 1 1 1 80 3 105291741 105292406 TGTTTCTCTTAGGGCAAGTG 58 105291680 105291701 CTTGTCTGAAGAAGATTTGGTG 58 NA Rattus norvegicus 81 Neurl3 ENSRNOG00000015366 ENSRNOT00000038610 2 1 1 86 9 42835567 42835585 GAAAGCCATTGAGCTGCTG 60 42832302 42834998 TCTCCTGATGTGACTTCAGAC 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975,ENSRNOT00000051687 3 2 2 80 4 70969772 70969792 ATGCTGCTATAATGCTGATGG 59 70969193 70969731 CAGTCTGACCTACAAATGGC 59 NA Rattus norvegicus 81 Cebpzos ENSRNOG00000040303 ENSRNOT00000062031 1 1 1 87 6 1516262 1516874 CTCGAGCCAAGATTTCAGG 58 1517547 1517567 CATTCCAGACTGTTCAATGGA 58 NA Rattus norvegicus 81 Nobox ENSRNOG00000025720 ENSRNOT00000029651 2 1 1 81 4 72754205 72754224 ACCACTATCCTGACAGTGAC 59 72753833 72754161 TGAAACCACACCATGATGC 59 NA Rattus norvegicus 81 Olr205 ENSRNOG00000045596 ENSRNOT00000047222 3 1 1 60 2 4820744 4820762 TCATCTGATTGTGGTTGGG 57 4820784 4820804 ACTGGGAAGGACATACATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt3 ENSRNOG00000003551 ENSRNOT00000004735 3 1 1 80 13 89647514 89647657 AGTTTGGATACAGCCTTCC 57 89647699 89647719 CATTCATCTTCAGGTACTGGT 58 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187,ENSRNOT00000049624 3 2 2 80 19 22080115 22080133 GGATTCAGACTCAAACGCC 59 22074849 22080073 GGTGGAAATAAGCTTTCACGA 59 NA Rattus norvegicus 81 Pgam1 ENSRNOG00000050585 ENSRNOT00000071965 3 1 1 83 1 261163975 261164764 CATCTGGAGGGTCTGTCAG 59 261164808 261164829 GTTCTTGTCCAGTTCATAGACG 59 NA Rattus norvegicus 81 Pvrl4 ENSRNOG00000004029 ENSRNOT00000005550 1 1 1 80 13 89770396 89770671 ACTGTAGAAGTTCTTGACCCT 59 89770713 89770731 AATCACACCCACTACGACC 59 NA Rattus norvegicus 81 Zfp133 ENSRNOG00000027955 ENSRNOT00000031623 3 1 1 117 3 138597816 138609108 TGCTGGAAGGTACACATGG 60 138609186 138609207 TGTAGTTCTCCAACATCACCTC 60 NA Rattus norvegicus 81 Syde1 ENSRNOG00000007307 ENSRNOT00000009606 1 1 1 80 7 14040435 14040631 CAACCATCTTTCGAGGGTG 59 14040675 14040693 ACGTTAGCTTGGCATACAG 58 NA Rattus norvegicus 81 Tesc ENSRNOG00000001128 ENSRNOT00000001490 1 1 1 80 12 44141495 44143803 TTGAGGACTTCCTGAAGATCTG 60 44141436 44141455 CAATGGTCTCCATGTTGAGG 59 NA Rattus norvegicus 81 Ankrd23 ENSRNOG00000016151 ENSRNOT00000039437 3 1 1 80 9 43113013 43113128 CTATAGAAACTCGAGATTTGCTGG 60 43112956 43112974 GCTGCTTGAGAATGTCCAG 59 NA Rattus norvegicus 81 Napb ENSRNOG00000004753 ENSRNOT00000006329 1 1 1 80 3 143024411 143025819 GATCTATGAGCAGGTGGGAG 60 143024350 143024370 GCTGCCTTGAAGAAGTAATCC 59 NA Rattus norvegicus 81 Ankrd39 ENSRNOG00000023995 ENSRNOT00000021685 2 1 1 85 9 43120178 43122776 TCTACATAAGGCTGCCGAG 59 43120111 43120129 GATCCCGGACAGTCTTCAG 60 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818,ENSRNOT00000039999 1 3 3 80 11 35666344 35676342 GTCCCTGCAGATCCTACTC 59 35666282 35666302 TAGGAGGCCGTATTCTTTCAC 60 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049,ENSRNOT00000081892 3 2 2 81 13 72947241 72947263 CTAGTAAACGCTGGCAAATACTC 60 72929481 72947201 GACCTCGTTCTTTGTGAGTG 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932,ENSRNOT00000082892 2 3 3 80 8 128246250 128246269 ACCAATGCCTTGTATGTCCT 59 128236903 128246208 GCTAAAGAGCGAGTGTACCA 60 NA Rattus norvegicus 81 U2af2 ENSRNOG00000015914 ENSRNOT00000021391 1 1 1 80 1 72321539 72321557 AAGGCCTCATGACTACCAG 59 72317605 72321498 ACTACAGTGGATACAACTCCAG 59 NA Rattus norvegicus 81 AABR07061614.2 ENSRNOG00000053654 ENSRNOT00000088301 1 1 1 60 4 136228551 136228569 GCCTCAAGGATCTTACACG 58 136228506 136228524 AGTCTTTCAGCTTCTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894,ENSRNOT00000036646 3 2 2 80 14 64725387 64728666 CTTCACTGAAGAGATTGGACCT 60 64728707 64728725 CCAGATTGGTGAGTCCTCG 60 NA Rattus norvegicus 81 Srgap1 ENSRNOG00000004603 ENSRNOT00000006180 2 1 1 80 7 64030937 64033463 TACATGACTACAAGGCCTCC 59 64030876 64030894 AGCATTATACTGGGAGCGG 59 NA Rattus norvegicus 81 Lhx4 ENSRNOG00000003595 ENSRNOT00000067253 2 1 1 80 13 73354001 73356919 CAAGCAGAACGATGACTCG 59 73353938 73353958 GCATTCTTTAGTGTCTCCAGC 59 NA Rattus norvegicus 81 Oas1d ENSRNOG00000048485 ENSRNOT00000057258 3 1 1 80 12 42372520 42372539 AACACTTCCTGAAGCATCCT 59 42369440 42372480 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 Mgat4a ENSRNOG00000018276 ENSRNOT00000024701 2 1 1 80 9 44079901 44085458 GAAGAACGGGAGTTTCAATAGTC 60 44079843 44079863 AGTGAAGGGTCTCTATGAGGT 60 NA Rattus norvegicus 81 Rpgrip1l ENSRNOG00000011829 ENSRNOT00000015876 2 1 1 80 19 17138774 17140732 CATTCAGCTTCAAGAGAAGCA 59 17140773 17140792 TGCATGTTTAGCTCATCTCC 58 NA Rattus norvegicus 81 Mmgt1 ENSRNOG00000000881 ENSRNOT00000001179 1 1 1 89 X 158972386 158976431 CCAATAGATATAGTTCTCCAGACAC 59 158972321 158972340 ATCCATGTCTTTGAACTCCC 58 NA Rattus norvegicus 81 Fam189a1 ENSRNOG00000023496 ENSRNOT00000031488 1 1 1 87 1 125580818 125580836 TGTCCTCTCCACCATTGTG 59 125570842 125580767 AGGGAAGAACATCTGCAGG 59 NA Rattus norvegicus 81 Ccm2l ENSRNOG00000009191 ENSRNOT00000012187 3 1 1 81 3 148555770 148556631 GTTCCTTCTTATTGGGATGCG 60 148556674 148556692 GATACCCATGCTCTCCAGG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 3 1 3 149 11 36762882 36770741 GGAAATCTGCAAATGTGAGGA 59 36775504 36778514 CGCATCTCTTCTTTCCAGG 58 NA Rattus norvegicus 81 Vps33a ENSRNOG00000056889 ENSRNOT00000090343 1 1 1 80 12 38477754 38479003 AATTCTCCAGACCTACGGC 59 38479047 38479065 CCTGTCTGAGCCTTTAGCA 59 NA Rattus norvegicus 81 LOC100909568 ENSRNOG00000046372 ENSRNOT00000075032 3 1 1 60 7 8210406 8210425 TCCCAGATTTCTACACAGCA 59 8210448 8210466 GACACAAGCAGTATAGGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt42 ENSRNOG00000034087 ENSRNOT00000046956 1 1 1 81 10 88170174 88170192 CCACAATCGACAATGCCAG 60 88170004 88170129 GTCTCATACTTGGTGCGGA 60 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177,ENSRNOT00000047444 2 2 2 80 X 20365208 20365230 GATCTGTGAAGATTGGTGATCTG 59 20365270 20366740 ACTCAGGAGTGCCAATGAC 60 NA Rattus norvegicus 81 Sdf2 ENSRNOG00000012121 ENSRNOT00000016297 1 1 1 80 10 65514509 65517220 CTGGAAACCAGGAAGTGAG 58 65517263 65517282 GTCCATTACAGAGCACTGTC 58 NA Rattus norvegicus 81 Dcaf6 ENSRNOG00000003078 ENSRNOT00000004199 1 1 1 80 13 83638010 83638028 GAGACTTCGTGGTGATTGG 58 83636235 83637966 GGACTTTGCTCTCCATCTC 58 NA Rattus norvegicus 81 Tlk2 ENSRNOG00000006285 ENSRNOT00000066484 2 1 1 80 10 93496235 93501168 GGTACTTATTGGTATTTGCCAC 58 93501206 93501227 CCAGACATCGACTTTATTTGAG 57 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 3 2 2 88 12 44968644 44968662 ATGGACACATTCACAGGGT 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 3 2 2 89 7 2824135 2824306 GATTGGAGAATTCTGCATGGT 59 2824066 2824084 GATTTGTTGGATGCCTGCT 59 NA Rattus norvegicus 81 Ola1 ENSRNOG00000019047 ENSRNOT00000026040 1 1 1 80 3 59847687 59848012 GGAATGACAAGGAGATTGAAGTG 60 59847629 59847650 CTGAAAGGTTCACCAAGTAGAC 59 NA Rattus norvegicus 81 Chrnb1 ENSRNOG00000014698 ENSRNOT00000019947 2 1 1 80 10 56402291 56402848 CAACTCATCAGCCTGAACG 59 56401313 56401331 TAACCTGTAGTCGGTCCAC 59 NA Rattus norvegicus 81 Serpine1 ENSRNOG00000001414 ENSRNOT00000001916 1 1 1 80 12 22646561 22648310 CTCATCCTGCCTAAGTTCTC 58 22648353 22648371 GAAGATGTCAGTCATGCCC 58 NA Rattus norvegicus 81 LOC499602 ENSRNOG00000013692 ENSRNOT00000068405 1 1 1 80 2 127811020 127811040 CGTCCCTAAAGAATGGAACAG 59 127811081 127811204 CGCCTCCAATAATGATGGTC 59 NA Rattus norvegicus 81 LOC682512 ENSRNOG00000036588 ENSRNOT00000045446 1 1 1 60 1 264706368 264706389 TACATGCGAATCTACAAGAAGG 58 264706329 264706347 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000082645,ENSRNOT00000030827 3 3 3 81 1 169452542 169452565 CTAGGAGACCTCATCTTAGATGTG 60 169449911 169452505 TTATGGTGTTCTCTACACCCTG 60 NA Rattus norvegicus 81 LOC100366054 ENSRNOG00000033515 ENSRNOT00000046076 3 1 1 85 13 88299522 88300018 TGTGACTGCTACATTCAGGAG 60 88300065 88300083 GTCTTGAGGACATCCAGCA 59 NA Rattus norvegicus 81 Exog ENSRNOG00000014801 ENSRNOT00000020174 1 1 1 83 8 128137538 128139754 CTGGAATAGGATAGAAATGTACTGC 59 128139794 128139813 GGTAAGGTTAAAGGTCCCGA 59 NA Rattus norvegicus 81 Actc1 ENSRNOG00000008536 ENSRNOT00000011773 3 1 1 80 3 105508390 105509272 CCCTCTTTCATTGGTATGGAG 58 105508330 105508348 GCGGATATCGATGTCACAC 59 NA Rattus norvegicus 81 Nlrp9 ENSRNOG00000021913 ENSRNOT00000029591 3 1 1 80 1 71878790 71890168 AAAGTAGAGGAACTACTGTTGG 58 71878731 71878751 AGAGTTCATAAGGGAAGTAGC 57 NA Rattus norvegicus 81 LOC690142 ENSRNOG00000025898 ENSRNOT00000010990 2 1 1 80 7 132391622 132394004 GAACAAACAGTTCAGAAACTGG 58 132394043 132394063 AAAGAATTCCACACTCGTCAC 59 NA Rattus norvegicus 81 Rasal3 ENSRNOG00000006167 ENSRNOT00000066722 1 1 1 80 7 14406139 14406912 CCAATCCAGCTTCTCTTCAG 58 14406078 14406097 TTGGAAATGAGAGGAGTGTG 58 NA Rattus norvegicus 81 Elmod2 ENSRNOG00000028176 ENSRNOT00000031614 1 1 1 80 19 24478695 24484275 TATTCCAAGAGTAAGGTCCTACAG 59 24478638 24478659 CTTCATGATGTCCACTATGCAC 60 NA Rattus norvegicus 81 Krt16 ENSRNOG00000014441 ENSRNOT00000019477 1 1 1 82 10 88151124 88151574 AGAGCAAGATCGTTAGAGCC 60 88151061 88151079 GAAGTCATTAGCTGCCAGC 59 NA Rattus norvegicus 81 Krt16 ENSRNOG00000014441 ENSRNOT00000019477 3 1 1 83 10 88151125 88151575 CAGAGCAAGATCGTTAGAGC 59 88151061 88151079 GAAGTCATTAGCTGCCAGC 59 NA Rattus norvegicus 81 Tex12 ENSRNOG00000049470 ENSRNOT00000013014 1 1 1 83 8 54993741 54993846 TTTGAGCGATATGAGCAAGG 59 54992962 54992980 GATGCATCTACTGCTGCTC 59 NA Rattus norvegicus 81 Znrd1-as1 ENSRNOG00000020166 ENSRNOT00000027299 2 1 1 60 9 18490059 18490078 AACAGGTGCAAATCAAAGAC 57 18490101 18490119 TGCTCTATCAGTTCCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Isg20 ENSRNOG00000054561 ENSRNOT00000091588 1 1 1 83 1 140602743 140602761 TACAGAACCCAAGTCAGCG 60 140602808 140604712 CTGCAGGATCTCTAGCCTG 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339,ENSRNOT00000051425,ENSRNOT00000066896,ENSRNOT00000063918 2 5 5 80 1 215676240 215678551 CAAGACCCAAACTTACTGCT 58 215679174 215679192 TGTTCTGACGCTTCTTCTG 58 NA Rattus norvegicus 81 Spz1 ENSRNOG00000013050 ENSRNOT00000017408 3 1 1 60 2 22146586 22146607 TTGAAGAGAAGACTACAGATGG 57 22146547 22146568 GACAGGTCTTCAGGAATATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj10 ENSRNOG00000007705 ENSRNOT00000010146 2 1 1 105 13 90751618 90751637 CACTTACTGGGCCTTCCTC 60 90751705 90751724 TGCAATGAGAAGCACAATGG 60 NA Rattus norvegicus 81 Gpr26 ENSRNOG00000047057 ENSRNOT00000075540 1 1 1 80 1 203971833 203978146 ACATCCATCCCAGTGTGAG 59 203978190 203978208 AGGTGCTGATCTTCTTGGT 59 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922,ENSRNOT00000017900 3 2 2 80 8 59490941 59491293 CAGAGCCATTAGGTACTGAC 58 59491334 59491354 TCTGATGAACTTCTTCTCGAC 58 NA Rattus norvegicus 81 LOC499886 ENSRNOG00000037081 ENSRNOT00000055882 2 1 1 80 3 121132443 121132739 GTGACCGACAAGTATCTGC 58 121132781 121132801 GATCCTGTTGTAGAGATGTCC 58 NA Rattus norvegicus 81 Pnrc1 ENSRNOG00000007793 ENSRNOT00000010271 1 1 1 103 5 48503990 48504008 CCTGCTATACAGACAGCCC 60 48502478 48502497 GTATACCATGCACAAGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100361644 ENSRNOG00000029988 ENSRNOT00000046772 2 1 1 60 2 23260737 23260760 CACTCAAGTTTATCAAGAAGAGGG 60 23260700 23260718 TCCTCCCTCTTTCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glb1 ENSRNOG00000010196 ENSRNOT00000013632 2 1 1 80 8 122486885 122486903 AAAGAAGTCCCAGAAGGCC 60 122486945 122490261 CGTCTTGAACTTTCTCAGAGC 59 NA Rattus norvegicus 81 RGD1560171 ENSRNOG00000043487 ENSRNOT00000064172 1 1 1 60 X 143682531 143682550 AATGGGTGAAGAAGGGTAGG 59 143682490 143682509 CCACAGAGGAAGCTTATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 3 2 2 80 10 94620082 94620100 CAGACTTTGTCATCAGCCT 58 94617067 94620039 GATGGTGTATTCTGTCCGTC 58 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777,ENSRNOT00000003145 2 2 2 80 X 157857049 157862149 ATAGCTTGGAAGAAGGCCTG 60 157862298 157862317 GGCTTATCTGCATTCCTCCT 60 NA Rattus norvegicus 81 Tbc1d17 ENSRNOG00000020191 ENSRNOT00000027436 1 1 1 80 1 100838887 100838987 CGACTTGGGCTATGTTCAG 58 100838825 100838847 CAGAAGGCATCTACTTCATTCTG 59 NA Rattus norvegicus 81 Baat ENSRNOG00000007395 ENSRNOT00000009777 1 1 1 80 5 64769232 64771241 TGAGACATCCTAAGGTCCTG 58 64769171 64769192 TAGCCATAGAAAGTCCAATCTC 58 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 3 2 3 80 14 83344923 83345148 CTTGCACAGTGTGATCAGC 60 83345190 83345210 TTTACTTGCTCCACCTCAGAG 60 NA Rattus norvegicus 81 Rn60_10_0878.5 ENSRNOG00000051174 ENSRNOT00000076574 1 1 1 60 10 87946681 87946701 TTCCAATGCATGTGATAAGCC 59 87946641 87946659 AGGTCTTGTGACACAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 3 2 2 80 8 50126382 50126402 ACCTATCCTCTTAGGTGACCA 60 50120504 50126342 TCAAGGATTTCTTGCTCACTG 59 NA Rattus norvegicus 81 C2cd4d ENSRNOG00000020832 ENSRNOT00000028263 2 1 1 77 2 195604410 195604429 ACCCAATCTTCAACGAAGAC 58 195604469 195604487 CCTTGGCCCTTAGACTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd40lg ENSRNOG00000000871 ENSRNOT00000001162 3 1 1 81 X 159703849 159705752 ATTGGATAAGGTAGAGGAGGA 57 159705795 159705813 TTCTCCTTTGTTGCACCTC 58 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 3 2 2 80 1 37769417 37769436 TGGTTGCTCCATTTCTTCAG 59 37769476 37770331 AGATAAGTATCTCAGGAGCCAG 59 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 1 2 2 124 10 56578182 56578293 CGCCCATGAATATTAAGTACGAG 60 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Sage1 ENSRNOG00000048059 ENSRNOT00000073396 1 1 1 103 X 158925582 158925600 GAAGGAGAAGCCATGAGTC 58 158923909 158925515 ACAATAGCACCTTCTCCCT 58 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 2 2 2 80 10 90207279 90208568 TCCAGACTGAGATTGTTACCA 59 90208609 90208628 CAGATTTCATGGTGAGCCAG 59 NA Rattus norvegicus 81 AABR07007399.1 ENSRNOG00000049010 ENSRNOT00000048860 2 1 1 60 2 12312072 12312090 CAAGTCCAAGATGCCAAGG 59 12312030 12312049 GTGAGTGATGAAAGCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eri1 ENSRNOG00000011448 ENSRNOT00000015239 3 1 1 80 16 60317521 60319430 ATTACTCAGGATCAGGTAGACAG 59 60319468 60319488 CTCCTTTGACTTCATCCACTC 59 NA Rattus norvegicus 81 Acot8 ENSRNOG00000015187 ENSRNOT00000020740 1 1 1 80 3 161263629 161267410 CAGTACTTAAGGGATCCTAACCT 59 161263571 161263589 CTCAATAGGCACCTCTCGG 60 NA Rattus norvegicus 81 Olr50 ENSRNOG00000015432 ENSRNOT00000020691 1 1 1 60 1 168014290 168014310 ATTTCTATCTGCTGGTTCCTC 58 168014250 168014268 TGTTTGGTTCTGACTCCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049960.1 ENSRNOG00000047376 ENSRNOT00000073637 3 1 1 84 5 146294388 146294407 GAAGACTGGAGAAAGAGGAG 57 146294454 146296058 TCTGCATCACTTTCCTCAC 58 NA Rattus norvegicus 81 Ccdc130 ENSRNOG00000008319 ENSRNOT00000011150 3 1 1 84 19 25369944 25370972 ACTCCGATCTACAGGTTCC 58 25369878 25369896 CATAGTCACAGTTGGCAGG 58 NA Rattus norvegicus 81 Lonrf2 ENSRNOG00000023312 ENSRNOT00000033964 1 1 1 80 9 45481615 45481636 ATAAGGAGATGCATGGAAACTG 59 45478911 45481575 GCCATACTCTGAAATCCCTG 58 NA Rattus norvegicus 81 Pcsk2 ENSRNOG00000005438 ENSRNOT00000007249 1 1 1 80 3 137783742 137833220 CCTGGCCTACAACTATAACTC 58 137833262 137833280 TCATCTGTGTATCGAGGGT 58 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000081138,ENSRNOT00000039696 3 2 2 80 8 115255796 115255814 TGGAAGGAGACAAAGAGCA 59 115252685 115255756 CTTCAGGTTTAGGTTTCTCAGTC 59 NA Rattus norvegicus 81 LOC100363068 ENSRNOG00000047293 ENSRNOT00000049165 2 1 1 80 14 6193310 6193330 GATCCTTCCCAGAAGAGTCTC 59 6192925 6193270 TTCCCAGTAATAGCCTACAGC 59 NA Rattus norvegicus 81 LOC681355 ENSRNOG00000039063 ENSRNOT00000059744 3 1 1 60 X 18489750 18489769 AGTGTAAAGAACCCTTGCTC 58 18489789 18489810 CTCGATCTATGAAGAATCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910070 ENSRNOG00000018534 ENSRNOT00000025068 1 1 1 80 9 44531129 44531819 TGAGTTACTGTGGAGTCCG 59 44531067 44531086 TCATGGTGGGTTGGTATCTC 59 NA Rattus norvegicus 81 Prex1 ENSRNOG00000006952 ENSRNOT00000009517 1 1 1 80 3 163344579 163344597 GTGCTTCAAGGTGTCAGAG 59 163343443 163344539 TTACACTCACTATAGGAGTCTCG 59 NA Rattus norvegicus 81 AABR07054117.1 ENSRNOG00000024844 ENSRNOT00000066588 1 1 1 81 3 141927565 141927700 AACCATAAGGATTGGCAGC 58 141927745 141927763 ATTTAGCTGAACCAGGCCT 59 NA Rattus norvegicus 81 Fbxo21 ENSRNOG00000001129 ENSRNOT00000064900 3 1 1 80 12 44265810 44265829 GACCAGCTCAAGTTCAAAGG 59 44264423 44265767 TCTGCGAGTCAATACCTGG 59 NA Rattus norvegicus 81 Banf2 ENSRNOG00000006032 ENSRNOT00000007946 1 1 1 80 3 138174170 138183559 TTTCAACAAGGCCTATGTCC 58 138183602 138183620 CAGATGATCCACCTCTGGA 58 NA Rattus norvegicus 81 Ankrd34c ENSRNOG00000013937 ENSRNOT00000018685 2 1 1 80 8 97107142 97114638 TCTGGATAAGCAGGTCTGAC 59 97107081 97107101 CTCAACTCAGTGTCATCATCC 59 NA InUTR Rattus norvegicus 81 Tbc1d10c ENSRNOG00000021510 ENSRNOT00000029237 2 1 1 148 1 219432666 219432960 TCTTCATGTCCCAGGTACAC 59 219432537 219432555 CTCAAAGATGGCTTGAGCC 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000038654 ENSRNOT00000059010 2 1 1 60 X 33722052 33722071 TCAGAATCAAGCGATTCCTG 58 33722011 33722031 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560010 ENSRNOG00000010071 ENSRNOT00000013356 3 1 1 159 2 178390134 178390152 CCTCTTCATCGTCCCTCAG 59 178391654 178391672 GCTGATACTGCAGATGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Higd1a ENSRNOG00000019428 ENSRNOT00000064114 1 1 1 80 8 130484248 130484270 GTCTATTCACTTGATCCACATGC 60 130483581 130484211 ATGGAATAGCCCATACCAAGAG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 2 1 1 67 2 36011092 36011110 GCTTCATTCGATGCTCCTG 59 36011785 36012943 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 St6galnac5 ENSRNOG00000049676 ENSRNOT00000072899 2 1 1 84 2 258052479 258052497 GAAGGCCTTCATGATCACG 59 258045945 258052432 GGAGATCTTCCTGTCTTTGC 58 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000049355 ENSRNOT00000070802 3 1 1 60 X 106523678 106523696 ACGGTCTCAAGGGAAACAG 60 106523718 106523738 GCAATCGGTATAACTTGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd1d1 ENSRNOG00000016451 ENSRNOT00000022150 2 1 1 80 2 186332831 186333128 GATGTCACCTAAAGAAGACTATCC 59 186332774 186332793 CTTTCTGAAGCATTCCCAGG 59 NA Rattus norvegicus 81 Fxr2 ENSRNOG00000011876 ENSRNOT00000016163 1 1 1 80 10 56244708 56244726 GATGTCCGACTACCACCTC 59 56244768 56245912 ATTGGCTCTCGAATAGACCTC 60 NA Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000078382 2 1 2 134 20 5244299 5244317 CATGAGCAGAAGTCAGGAG 58 5242916 5242934 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000087065 1 1 2 80 1 203534575 203534594 CATCGAGCAGATTTACCCAG 59 203534637 203534794 AATCCATCAGAGCCTCCTG 59 NA Rattus norvegicus 81 Agpat9 ENSRNOG00000002159 ENSRNOT00000002936 3 1 1 80 14 10357313 10358544 CCATTACCATAACAAGCAGTACAG 60 10357256 10357277 ATTAAGACATCGATGGGAGAGG 60 NA Rattus norvegicus 81 AABR07012616.1 ENSRNOG00000045806 ENSRNOT00000075261 2 1 1 60 2 199562598 199562618 ACAGCCAACTTCAACTATGAC 59 199562558 199562576 TCACAACACAGAAGAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mixl1 ENSRNOG00000003176 ENSRNOT00000004244 2 1 1 80 13 97280180 97281898 AGTCAAGGATCCAGGTGTG 59 97280118 97280137 AGGATAAGGGCTGAAACGAC 60 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172,ENSRNOT00000065342 2 2 2 80 1 193221654 193222877 GAACCAATGAGAAGGGTGC 59 193222920 193222939 AGACAAAGTCCAGGATCAGC 60 NA Rattus norvegicus 81 Mars ENSRNOG00000025459 ENSRNOT00000035486 2 1 1 80 7 70588239 70588505 ACCTCATCGCTACAGAATACC 60 70588179 70588198 CCATGTCTCCAAACACTCCT 60 NA Rattus norvegicus 81 Pms1 ENSRNOG00000004076 ENSRNOT00000043714 3 1 1 80 9 53198506 53203233 ATTGACACCAGGAGTTTCCA 59 53203274 53203294 ATTACTCCATAGAACGGGAGG 59 NA Rattus norvegicus 81 Zfp167 ENSRNOG00000004104 ENSRNOT00000043784 2 1 1 82 8 131940116 131947037 CCTATCTGGGTAAGAACAGGA 58 131947079 131947099 TGTGTCAAGTGAATGTGATCC 59 NA Rattus norvegicus 81 Zfp167 ENSRNOG00000004104 ENSRNOT00000043784 3 1 1 82 8 131940115 131947035 GCCTATCTGGGTAAGAACAG 58 131947078 131947098 GTGTCAAGTGAATGTGATCCT 58 NA Rattus norvegicus 81 Slc26a9 ENSRNOG00000029514 ENSRNOT00000009742 2 1 1 80 13 48532484 48532591 AAGACCTACAACAGGGTCC 59 48532633 48532653 CTCTGAGTTGGCAAAGTAGAG 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 1 3 3 80 X 23101844 23104188 AATGAGATTGATGCGGGTG 58 23101782 23101801 CCGTAGTGCAAATTCCTCAG 59 NA Rattus norvegicus 81 LOC685762 ENSRNOG00000031555 ENSRNOT00000049256 1 1 1 60 X 24059557 24061082 AAGATTTGCAGGAGTGAAGG 58 24061102 24061123 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Arhgap27 ENSRNOG00000028569 ENSRNOT00000038836 1 1 1 80 10 91425491 91425810 AAGAGACTTCGGAAGAAACAC 58 91425431 91425452 CTTTGAATCCTTGAAGAAGGTC 57 NA Rattus norvegicus 81 AABR07052780.1 ENSRNOG00000046960 ENSRNOT00000070799 1 1 1 84 3 75020251 75020269 CAGTTGGCAAGTTCCTCTC 59 75020183 75020203 CCAGATCAAGATGATCATCCC 58 NA DesignNoJunction Rattus norvegicus 81 Socs3 ENSRNOG00000002946 ENSRNOT00000003940 1 1 1 60 10 106975444 106975463 TACCCTCCAGCATCTTTGTC 60 106975403 106975423 CACTTTCTCATAGGAGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000049136 ENSRNOT00000072964 2 1 1 143 2 115307408 115307429 TCAGCACTTGATACAACATGTG 59 115304244 115307310 CCCATCATTTGTAGATTTCTAGGTC 60 NA InUTR Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 1 2 2 87 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616320 128616338 CATGTTGAACACCTCCAGC 59 NA Rattus norvegicus 81 Klhl34 ENSRNOG00000024479 ENSRNOT00000050708 1 1 1 60 X 39955982 39956003 CCCGTATCTTATTAGTTGGTGG 58 39955943 39955964 ACCATGATTTCCTCAGTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl34 ENSRNOG00000024479 ENSRNOT00000050708 3 1 1 60 X 39955983 39956005 GACCCGTATCTTATTAGTTGGTG 59 39955945 39955966 CATGATTTCCTCAGTTACAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pate2 ENSRNOG00000033981 ENSRNOT00000060448 2 1 1 85 8 36851113 36851132 TCATGAGATCCTGCACACTG 60 36851180 36851486 ATACATGCTCTGCCCTCTG 59 NA Rattus norvegicus 81 Ch25h ENSRNOG00000019141 ENSRNOT00000025856 2 1 1 60 1 252807852 252807872 GTTGGCTACCCAATACATGAG 59 252807812 252807830 CAGCACATCGAAGAAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000086769 1 1 2 80 14 83054460 83061089 TAGAATTTCCCAGGTGACAG 57 83054399 83054417 ACATTCTTGTAGGCCACAG 58 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 3 2 2 84 10 37606665 37606685 ATGATATTCCTGTTTGGGACC 58 37606730 37607837 TCTAAGTAGTTTGCAGCCAG 58 NA Rattus norvegicus 81 Trappc2 ENSRNOG00000042276 ENSRNOT00000068113 2 1 1 80 X 29556541 29556560 TTGGCCACCATGATAATCCA 60 29553974 29556500 GATGACGGTGATCATCTTTGG 59 NA Rattus norvegicus 81 Olr159 ENSRNOG00000046999 ENSRNOT00000075036 3 1 1 60 1 169646185 169646203 TTGCCTCCCACTATGAACC 59 169646225 169646245 CACAATCTCGTATTTGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 1 2 2 80 14 83911561 83915176 GCATTGATGAAGTGATTGTCC 58 83915216 83915236 CAAACTTCTCCACATTGTCTG 58 NA Rattus norvegicus 81 Crabp2 ENSRNOG00000048421 ENSRNOT00000072198 1 1 1 80 2 184883086 184883107 ACGGAGATTAACTTCAAGATCG 58 184883145 184883355 CCATTTCACCAAACTCTTACAG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431,ENSRNOT00000050819 3 2 2 80 X 23487938 23487957 AAGATGAAGGACCTACAGGA 58 23483416 23487897 GAGCTCTTGCTTCTTAATGGA 58 NA Rattus norvegicus 81 Gpr171 ENSRNOG00000025297 ENSRNOT00000036690 3 1 1 83 2 149325886 149325904 ACCCAGAAAGATGGAACCG 60 149321070 149325839 AACAACCTCAGGGTTGGTC 60 NA InUTR Rattus norvegicus 81 Adrb1 ENSRNOG00000017002 ENSRNOT00000022813 2 1 1 60 1 277538299 277538317 ATCATGGCCTTCGTGTACC 60 277538338 277538359 CGATCTTCTTCACCTGTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr61 ENSRNOG00000019738 ENSRNOT00000026750 1 1 1 60 2 210943585 210943606 ATCAGCTGAGAAGAGCTATCAC 60 210940582 210943565 TCATGAAGGCATCTTTGCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Srek1 ENSRNOG00000032735 ENSRNOT00000040533 3 1 1 80 2 33823368 33824239 CCATTGAACCAGAGTCTGGA 60 33823307 33823325 TAGACCTGGACTTTGAGCG 59 NA Rattus norvegicus 81 RGD1560394 ENSRNOG00000038150 ENSRNOT00000058062 1 1 1 137 14 82054627 82054645 ATTTGAATTCATGCAGCGC 58 82053722 82053740 AATGATCTTCAGCGTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119,ENSRNOT00000083009 2 2 2 80 10 78126025 78132978 TCCAATGCAGACATTGCTC 59 78125963 78125981 GCGAGCAGAAGGATTTAGG 58 NA Rattus norvegicus 81 Fam83a ENSRNOG00000006251 ENSRNOT00000008330 1 1 1 86 7 97866831 97879701 TCATACAGCTTCTCTTGGCT 59 97879750 97879768 CTCATCAAACAGCTCCACC 59 NA Rattus norvegicus 81 AABR07055600.1 ENSRNOG00000047030 ENSRNOT00000074121 3 1 1 80 7 6885156 6885178 CTACTAGTTATCTGTTCCTGGG 57 6885097 6885118 ACAGAATTCTAGTTTGAGTCCC 58 NA Rattus norvegicus 81 Fli1 ENSRNOG00000008904 ENSRNOT00000068037 1 1 1 80 8 33572978 33581619 GTTACCTCAGGGAAAGTTCAC 59 33572918 33572937 CTTCCTTGACATTCAGTCGT 58 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 2 2 2 80 1 127732024 127732044 GTGTGCTAATTACATTCGCAG 58 127732085 127738934 ATCTTAGCAGACTCTAGCCA 58 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000067414 3 1 2 109 10 62036102 62036121 CAGGGATTTGAATCTGGACC 58 62106116 62106134 AACAGCAGCAATTCCACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322,ENSRNOT00000019180 3 2 2 80 9 46777389 46777408 TCGCTTTGAAGAGTTCTGTG 59 46777449 46778960 CTCCAAATGACTTAAAGGCCA 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 1 1 3 159 20 4789801 4789946 CTCACCTTGAGATGGGAGG 59 4696035 4789679 CTGTTCCTCCTGTGTTTCTC 58 NA Rattus norvegicus 81 AABR07066201.1 ENSRNOG00000022509 ENSRNOT00000061893 3 1 1 122 9 4733491 4733509 GGAAGCTGATGAAGAAGCG 59 4734029 4734047 ATCACTCCTCAATAGGGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gpr88 ENSRNOG00000026953 ENSRNOT00000037068 1 1 1 82 2 219262113 219262532 AAATCAAGCAGGCAAGTGTC 60 219262050 219262069 CATTCTGGCCAACTCTTCAC 59 NA InUTR Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143,ENSRNOT00000079855 1 2 2 80 5 157354602 157354620 GAACACTATGACAGCGTCC 58 157349294 157354559 ATGAAGCATCTGGAAGTCAG 58 NA Rattus norvegicus 81 Rnf167 ENSRNOG00000003879 ENSRNOT00000005242 2 1 1 80 10 57271139 57271160 CTTGGGCTATTACCTCATTCCT 60 57271196 57271329 CAACGAACTATCAATACTGTTCCC 60 NA Rattus norvegicus 81 Serpinf2 ENSRNOG00000003233 ENSRNOT00000004322 2 1 1 80 10 62266309 62268853 AACCTGAGATACAGGTGGC 59 62266247 62266265 TCCACCCAAAGTAAGTGGG 59 NA Rattus norvegicus 81 Melk ENSRNOG00000013598 ENSRNOT00000066277 1 1 1 80 5 59812244 59812264 AAATCTCTTGAACCATCCCTG 58 59812306 59819266 AGGTGAGTCAAAGAAGCCT 59 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000064830 3 1 2 61 8 61917155 61917174 TACAATGGCATGACTGTGTC 58 61914796 61914814 TAAAGCTCTGGCCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909862 ENSRNOG00000046359 ENSRNOT00000007560 2 1 1 126 2 35498761 35503454 GAAAGGAAGAGATTTGAACAGAGG 60 35498658 35498680 ATTCCTAGGAAGAGGACAAAGAG 59 NA InUTR Rattus norvegicus 81 Sf3b1 ENSRNOG00000013516 ENSRNOT00000019126 2 1 1 80 9 61596378 61597909 ATGGATAGGGACCTTGTACAC 59 61596318 61596338 ACAGCCAAATCCATAAACACC 59 NA Rattus norvegicus 81 LOC687430 ENSRNOG00000000943 ENSRNOT00000001251 3 1 1 60 12 31258307 31258326 CAGGGATTAACATGGTGCTG 59 31258349 31258367 TCCTTGTAAGAAATGCCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apba1 ENSRNOG00000014928 ENSRNOT00000020123 3 1 1 80 1 241793647 241793666 CCACAGTGCTAATTAGGAGG 58 241793706 241794822 TCATGAGGCTACAGATAATTCC 58 NA Rattus norvegicus 81 Zswim3 ENSRNOG00000015525 ENSRNOT00000021052 1 1 1 83 3 161272642 161272660 CTTCATTGTCAGGGACTGC 59 161272705 161285317 TGCACATATAGGATGTCCTCG 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000090593,ENSRNOT00000080108 3 2 6 89 5 158081933 158081951 GAGATGTGCAGCATGAAGC 60 158082004 158083189 AGACGGTGAATTCCTGTCG 60 NA Rattus norvegicus 81 LOC684208 ENSRNOG00000048369 ENSRNOT00000074214 2 1 1 60 1 167857928 167857946 CCTGCTACCACCTGTAGTC 59 167857970 167857988 TGAACGGATCTCCTTGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem25 ENSRNOG00000014218 ENSRNOT00000067558 2 1 1 82 8 49105066 49105084 TGAGCTTAACTGCTCCCTG 59 49103637 49105023 CTGGTTTGAATTGCACATTGAG 59 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000073775 1 1 2 85 9 8350170 8350188 AGTGTCAATTCGAGAGGGA 58 8350237 8351583 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Frrs1 ENSRNOG00000016351 ENSRNOT00000021988 3 1 1 80 2 220435744 220436689 TGAAGATGTACAGGGATTCG 57 220436731 220436750 CTTGGAGCATTCCAGTAGAC 58 NA Rattus norvegicus 81 Gstm3 ENSRNOG00000019058 ENSRNOT00000025800 3 1 1 80 2 210765046 210765064 GACACTTTGGAGAACCAGG 58 210763795 210765004 CTTCTGCTTCTCAAAGTCAGG 59 NA Rattus norvegicus 81 Mir6329 ENSRNOG00000047361 ENSRNOT00000071369 3 1 1 60 8 56629657 56629676 GTTTGCAATGTGACTCAGCT 60 56629616 56629634 AGAGTGACTCAGCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077561 2 5 8 82 20 4363499 4363517 GAGCCACTTATGCTGAGCT 60 4363562 4363728 TCAGTCCTTCCTGTGTTCAG 59 NA Rattus norvegicus 81 Mirlet7g ENSRNOG00000050242 ENSRNOT00000072553 1 1 1 60 8 114874467 114874490 GTAGTAGTTTGTACAGTTTGAGGG 59 114874506 114874527 CTGTACAGTTATCTCCTGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sass6 ENSRNOG00000015211 ENSRNOT00000067324 3 1 1 80 2 219637725 219639398 CACAGAAAGGATCTAGTCATCC 58 219639436 219639457 GTCTTCCTCGGATATAACAAGG 58 NA Rattus norvegicus 81 Cenph ENSRNOG00000018615 ENSRNOT00000025129 1 1 1 80 2 30768621 30768640 TGGTAAAGGCCATGAAAGAC 58 30767168 30768578 AAATAAGGCCCTGGAATGC 58 NA Rattus norvegicus 81 Carns1 ENSRNOG00000018603 ENSRNOT00000025092 2 1 1 88 1 219421238 219421256 GTGACCTTGTGCATTCTGG 59 219420904 219421187 CAAAGGAGCATGTTTCCAGG 60 NA Rattus norvegicus 81 Larp6 ENSRNOG00000012438 ENSRNOT00000017147 2 1 1 80 8 65625320 65630886 TTCAAGAAGGTGAAACACCTC 59 65630928 65630946 ATTCAACTCCAGGGTGACC 59 NA Rattus norvegicus 81 Olr84 ENSRNOG00000030275 ENSRNOT00000048411 2 1 1 60 1 168341885 168341906 CTTCTGGTTTCATGATGGAGAG 59 168341924 168341945 AATTAGGAAGATCTGAGTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd28 ENSRNOG00000019697 ENSRNOT00000026680 2 1 1 80 16 7866366 7871469 GCATCTTGTAGTGAGGAAGC 59 7866305 7866324 GGTCTGCCAGTTCTTATCTC 58 NA Rattus norvegicus 81 Olr181 ENSRNOG00000050959 ENSRNOT00000043339 1 1 1 60 1 169881761 169881781 CCGTATTCAAACTTCCATCCT 58 169881721 169881742 TGAGAACCACAGGTATTTAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agpat1 ENSRNOG00000000437 ENSRNOT00000088079 3 1 1 84 20 4375365 4375383 ATGGTTGGATCCTCTTCCT 58 4375430 4375650 CGCAAGATCTTCATGTTCTC 57 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548,ENSRNOT00000077892 2 2 2 60 20 4489184 4489203 AGTGGAAGCTCTGGAAACTC 60 4489143 4489162 TGTAGAAAGTGCAGAAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071287.1 ENSRNOG00000031523 ENSRNOT00000048864 3 1 1 80 8 107706891 107709157 TTTATGCAAGAGGAGAACTGG 58 107709198 107709217 CCAGCTTCTGTAAGATGGTC 58 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849,ENSRNOT00000079414 2 2 2 136 3 164055531 164055549 CTACCTCTTCATGGTGCAG 58 164050456 164055435 GAGGATAATCTGAGTCATTCAGG 58 NA Rattus norvegicus 81 Cldn18 ENSRNOG00000030386 ENSRNOT00000052043 2 1 1 81 8 107940521 107941265 GATTATGTTCATCATCTCAGGAGTC 59 107940464 107940484 CATCCAGAAGTTGGTTACCAG 59 NA Rattus norvegicus 81 Ptk6 ENSRNOG00000012987 ENSRNOT00000017337 3 1 1 80 3 176700044 176700064 CAAGGAACGTTCTCGTTACTG 59 176699489 176700002 AGATGTCCTCCTTGACGAG 59 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 3 2 2 80 16 73960387 73961931 TTCTGTCTTTGAGGTTGATGG 58 73960327 73960346 TGGTCAAGAAACAACTTTGC 58 NA Rattus norvegicus 81 Lingo1 ENSRNOG00000017193 ENSRNOT00000023084 3 1 1 156 8 61290097 61290115 TGTTGTAGGAGGAGACGGA 60 61276194 61276212 TGGGCATGCTTCTCATACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 2 2 2 81 3 161814954 161816899 AAGTATGAGTACTGCATCTGGA 59 161814894 161814912 AGTCGCTCTTGGTTAGCTC 60 NA Rattus norvegicus 81 RGD1306227 ENSRNOG00000017581 ENSRNOT00000046174 1 1 1 80 2 52345020 52345042 GTAAATAACCTACCTCCAGACAG 58 52345081 52346155 TTGAAGAATTCTGGTTGCCT 58 NA Rattus norvegicus 81 Ubxn11 ENSRNOG00000015476 ENSRNOT00000021342 2 1 1 80 5 152338861 152338879 GAAGGTGCCCTTAGAGTCG 60 152339617 152340067 ATGTCCACCTCATCTTCATCTC 60 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 3 2 2 83 8 62407326 62407345 GTTTGGTGGACTATCTTCGA 57 62407162 62407281 CTTCACAGACGTCTAGTGAG 58 NA Rattus norvegicus 81 Nkx6-3 ENSRNOG00000018147 ENSRNOT00000024532 3 1 1 119 16 73667461 73667480 ACCAGATCTTTGCTCTGGAG 60 73666271 73667379 TCTGGAACCACACCTTGAC 60 NA Rattus norvegicus 81 Nbl1 ENSRNOG00000049402 ENSRNOT00000072299 1 1 1 80 5 157525861 157527730 TGGGAGATTGTGACCTTGG 59 157525799 157525820 GCAGTGTACAATCTTCTCAACC 60 NA Rattus norvegicus 81 RGD1560633 ENSRNOG00000031736 ENSRNOT00000041555 2 1 1 60 8 55275871 55275892 ATTACCACTTGAAGAGGAACCA 60 55275832 55275856 GTCCATAATTTATCCAGGTTGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpi ENSRNOG00000018898 ENSRNOT00000025783 2 1 1 80 8 62328197 62328216 AAGAGTGAGAAGAAGGTGGT 58 62326117 62328157 GCTGTTTCCGTTAGATATTTGC 59 NA Rattus norvegicus 81 Olr1710 ENSRNOG00000049102 ENSRNOT00000045794 3 1 1 60 20 1197940 1197958 CCTTTCCCTTCTGGACCTC 59 1197979 1198000 GGAACTGTCAACATACTGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl3l2 ENSRNOG00000000801 ENSRNOT00000001050 1 1 1 60 20 37588845 37588865 TCCTTCTCCGAGAAGAATCTG 59 37588885 37588905 AGAACCTCAGAAAGAGATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050438.1 ENSRNOG00000033792 ENSRNOT00000051887 1 1 1 74 5 164502351 164502374 GGAGACGTACAACAATCTATTGTC 60 164422336 164422354 TCTTGTTCCAAGACCTCCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC690386 ENSRNOG00000042383 ENSRNOT00000068374 3 1 1 92 20 11545705 11545723 TGTCAGTCATCCTGCTGTG 60 11545631 11545649 AGAGCAGATGGAGACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3galt4 ENSRNOG00000000471 ENSRNOT00000000550 2 1 1 60 20 5447128 5447146 CAGCTCATTCTGAAGGTGG 58 5447170 5447188 CCACAAAGACATCCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1695 ENSRNOG00000000746 ENSRNOT00000000973 1 1 1 60 20 859241 859261 TAATCCTCTCATCTACACGCT 58 859201 859219 GAAGAGCCTTTCAAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sobp ENSRNOG00000000316 ENSRNOT00000000348 1 1 1 80 20 47893698 47893716 AAAGGACCATGGCAATGTG 59 47860759 47893654 GACACCTCATCTTCTGCTG 58 NA Rattus norvegicus 81 LOC100362856 ENSRNOG00000050316 ENSRNOT00000071766 3 1 1 60 20 1098778 1098796 GACCACTTCTTCTGTGACC 58 1098736 1098755 TTTGGGATGTATCACCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361664 ENSRNOG00000001220 ENSRNOT00000001635 1 1 1 60 20 11626611 11626629 CCTGTCAGTCATCTGGGTG 60 11626569 11626588 GTGATAGGTTTGCAGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1690 ENSRNOG00000046933 ENSRNOT00000049250 2 1 1 60 20 775981 776003 CGTTATACACAGCAAGTACACTC 60 775943 775964 AACTGGTGAATTATCTTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1671 ENSRNOG00000000726 ENSRNOT00000000953 1 1 1 84 20 399107 399125 TAACACCTAGCCTCAACCC 59 398896 399060 AAGGTATTTCTACGCAGCCT 59 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000066600 2 1 2 80 20 1053287 1108981 GGAAATGCTTAGAGATGAGTGTC 59 1053229 1053248 ACTTGGTAAATGCAAAGCGT 59 NA Rattus norvegicus 81 Smtnl1 ENSRNOG00000007516 ENSRNOT00000009903 3 1 1 80 3 72211362 72211380 CGCCTTTGACTATGCAGAG 59 72207510 72211320 GCTAGTTTCTCTGCAGTAGAG 58 NA Rattus norvegicus 81 Zmat4 ENSRNOG00000042690 ENSRNOT00000048602 1 1 1 80 16 73076903 73076923 TTACAGACAGTTACTGCAAGG 58 73015610 73076863 GCTTTCGACTCTCATAATGGG 59 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 3 3 3 80 5 59630462 59630480 GTCTGTTACATCCAGCTGC 59 59624444 59630418 CTGTTCCTTGATGGAGCTG 58 NA Rattus norvegicus 81 RGD1563348 ENSRNOG00000054563 ENSRNOT00000082857 3 1 1 81 3 72071320 72071458 CAACAGTCGTGTTGAACTCTG 60 72071259 72071278 AACCATCTCTTGAGGCTCAG 60 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 2 2 2 81 5 155705920 155705940 TTGACAACTATGCAGTCACAG 59 155703126 155705877 TAATCCTCTTGCCCTGCAG 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 3 2 3 80 3 150820762 150822900 CGGTTTCATACTTTCTGTTCCA 59 150820703 150820722 AAGTGCTCAAACATCTCTGC 59 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 2 2 2 80 5 59070232 59070253 GTACCTGATGAGTGGAGTAGTG 60 59070073 59070191 GGCTCATCATCTGGATCCC 60 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 3 2 2 92 16 80751528 80751549 TTGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 Nelfcd ENSRNOG00000047874 ENSRNOT00000073634 3 1 1 80 3 172510898 172510919 ATTATGGGAGAAGACTACTTCG 57 172510958 172514663 AGAATCTTCTTCCTGATGCTG 58 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816,ENSRNOT00000033653 3 2 2 80 3 407879 407900 AGATTCGTTTACACAGGAAAGG 59 405420 407840 CAGTGCATATTTATCTGCAGC 58 NA Rattus norvegicus 81 Osbpl2 ENSRNOG00000057756 ENSRNOT00000087356 2 1 1 80 3 175527211 175527891 GATCCTAAATCACAGAACTGGAG 59 175527931 175527949 ACTCTGTGAAGCTCCTTCC 59 NA Rattus norvegicus 81 Rbm38 ENSRNOG00000006420 ENSRNOT00000008764 2 1 1 111 3 171038196 171038214 TTTGGAGACATCGAGGAGG 59 171038814 171038832 CTTTGCAAGCCCTATCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Pramel7 ENSRNOG00000021949 ENSRNOT00000039101 1 1 1 80 3 75546076 75547041 GAGTTGTTTAGGTGTCTGAAGTC 59 75546018 75546037 TGACGACAAGTCTGACTGAG 60 NA Rattus norvegicus 81 Rims4 ENSRNOG00000010868 ENSRNOT00000014498 1 1 1 95 3 160242026 160244157 AAGTCCTGCAGGTAATTGTG 58 160241950 160241968 TCAAGTCCAGTTCCTCCAG 59 NA Rattus norvegicus 81 Defb4 ENSRNOG00000013939 ENSRNOT00000058029 2 1 1 109 16 75634814 75637604 GCCTCTTTCAGCCTTTACTC 59 75634724 75634742 CACAAGTGCCAATCTGTCG 60 NA Rattus norvegicus 81 Tmco3 ENSRNOG00000019346 ENSRNOT00000026281 3 1 1 80 16 81578276 81579704 CCACCACTTCATAAAGGATATCG 59 81578218 81578238 GGCAGTCCTATTGTTGTACAC 59 NA Rattus norvegicus 81 Pdha1l1 ENSRNOG00000014745 ENSRNOT00000019797 1 1 1 87 16 88347280 88347298 CATGAGGAAGATGCTTGCC 59 88347127 88347145 ATTACGGGAAGCTACCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cldn23 ENSRNOG00000011424 ENSRNOT00000015176 3 1 1 60 16 59988907 59988925 AGTGGAACTACTTCGGGAC 59 59988948 59988967 AGTGAAGTGATCATGAGTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps31 ENSRNOG00000011839 ENSRNOT00000015790 2 1 1 80 16 74469149 74469169 TGAGGAGATGATACAGTGGAC 59 74468241 74469107 CCATCATCGTCAAGACCTG 58 NA Rattus norvegicus 81 LOC688765 ENSRNOG00000032376 ENSRNOT00000042908 2 1 1 60 16 58731455 58731478 CTACTCAAGTTTCAGAAGAGTTCC 59 58731418 58731436 GAACCAGAGCTCAGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb37 ENSRNOG00000038115 ENSRNOT00000058002 2 1 1 81 16 75083224 75094841 ATCAACCCATTTGCTGTCC 58 75094886 75094904 GAAATCTTGGGCACTGGAG 59 NA Rattus norvegicus 81 Cldn24 ENSRNOG00000031521 ENSRNOT00000050279 1 1 1 60 16 47537384 47537404 ATTACTACCACGTATCTGCCA 59 47537344 47537362 TTTCCATCTCGTTCAGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn24 ENSRNOG00000031521 ENSRNOT00000050279 3 1 1 60 16 47537078 47537096 GACCTCTGGTGTGATGGTC 60 47537036 47537054 CTCTTGCACTGTCATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561928 ENSRNOG00000031879 ENSRNOT00000042609 3 1 1 60 16 61130783 61130802 AGACCATTCTCAGCAATCAG 58 61130825 61130843 CCCTTCAGAGTGATGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 3 2 3 94 16 75415446 75415464 TCTAGATCAGGAGCAGCTG 58 75414890 75415389 ACTTCACATCTGCATCTTGG 58 NA Rattus norvegicus 81 LOC100910977 ENSRNOG00000011397 ENSRNOT00000015144 2 1 1 60 16 54533214 54533232 AAATCAAGCCCAAGAACCT 57 54533172 54533193 TCACGGTCTATCTTATGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 3 2 2 81 16 71258290 71260011 CCCAGTATAGAGACTCCAAAGAC 60 71260052 71260070 CAGGGTCCGTAATGTCCTC 60 NA Rattus norvegicus 81 AC107446.2 ENSRNOG00000047948 ENSRNOT00000038429 1 1 1 80 3 57770984 57771015 AACTCCATGGTCTACGACTC 59 57771057 57771076 CCCGCTGATGATAAGTTTCC 59 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736,ENSRNOT00000090674 2 2 2 80 16 81494865 81494884 GTGTCTTTACCTCACAGCAC 59 81494924 81496131 CAAGCTTCATACAGTTTGTCCA 59 NA Rattus norvegicus 81 LOC500845 ENSRNOG00000029354 ENSRNOT00000051980 3 1 1 81 16 84406381 84406400 CTGCTAGTCATCACTTTGCT 58 84391482 84406337 GTATCACAGCCTGTACCTG 57 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000038543 2 1 2 88 2 178282780 178296814 GCTCAATCACAGTTGGTCG 59 178282710 178282728 CTTGTCTGCCTCTCCTCTC 59 NA Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 3 2 2 81 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592123 41592142 ATGTCACATTTGTTTCCGGC 60 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461 2 1 2 80 2 150858396 150858414 TTCCAATACCAACAGGCTC 57 150858457 150864102 CATGCACAATATTGAGCCTG 58 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 1 2 2 87 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757573 33757591 CTGATAGTCCTGAGGCCTG 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000091593 1 1 2 81 8 108791314 108801359 TAAGGACACCTGGCATTGG 60 108791251 108791272 TCAACAAAGCTATCATCAGCAG 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000084455 1 1 3 82 2 187848598 187855307 GTAGTCAAGCTTGAGGCAG 58 187848534 187848552 CTGTTCTCAGCATCCACTC 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176 1 1 5 119 X 26444635 26444653 ATTCTTCCTGAGCTGCCTC 60 26448509 26450395 TTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000045362 3 1 2 96 3 110556793 110556811 GATCTCTTGTGCTGAGCAG 58 110556697 110556720 GAGAATTCCAAAGCACGGG 59 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000070912 2 1 2 80 3 109862292 109862310 GTTTCCAGACCTACTGGAC 57 109862358 109862377 CGAGTCTTCTTCATCTGCC 58 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 1 2 2 80 5 14612083 14612101 AGCTTGTGAATGGGAGAGG 59 14612144 14616842 TATCAGCACCCTCTTCAACC 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 3 2 3 80 2 188404346 188404984 AGATCCAGGACGACTACCT 59 188404284 188404304 ATTTGTTGTCCTGGATGTCAG 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165 1 1 2 80 5 28099286 28164116 AGAATAGAGCAGGGCTGTC 59 28099224 28099242 TGGCAGGAAACAGAGATCC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000087709 2 1 3 80 15 43019947 43020953 CAAATATGAAGCAGATACGGTAGAC 60 43020988 43021009 GAGGTACACTTATTCAGCTCGA 60 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 2 1 1 60 X 54821399 54821420 GTGGAGGTTAACTCTATACCAG 58 54822117 54822135 AAGGCATCATACACCAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 2 2 2 60 1 222243178 222243198 CAGCCATCTACAATGACACTC 59 222243059 222243077 TTCTGCTGAATCCTGGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 3 1 2 82 6 96165577 96165595 GCTACACTCTACAGGGACC 59 96153235 96165169 AGCATTGAACCTGTCTTCTG 58 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000079432 3 1 3 168 5 22764942 22765421 GAACACAGAGGCAAAGCAC 60 22761629 22764813 TCCTAGCTTTCCTAGAACTTCC 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839 1 1 2 96 1 86971001 86971021 TGACTCCAAGAAGGCTTACAG 60 86971187 86971285 CAGCTCCTTCTTCCATCCC 60 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 1 2 2 80 1 137961443 137966300 GGGAAAGAAGATGATGACTTGG 59 137966339 137966359 AAGTTCCTCCTCAGGTAAGTC 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271 2 1 2 80 15 45875740 45879511 ATTCTCCCACACTACCACC 59 45875678 45875698 TGTCAATAACCATTGGCTCAC 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957 1 1 2 96 1 205715220 205715238 TGAGCCCTCATGCATAGTG 60 205715295 205715563 TTTAAGACCCTGACTGTTCTCC 60 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 3 2 2 81 1 167522444 167522748 TTAACTGCTAAGCAGGCAC 58 167522793 167522811 AGAGGATCTCGATCTGCTG 58 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 1 2 3 68 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383830 78383848 GATTTACCCACCAGGAGGA 58 NA DesignRelaxed Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000084777 3 1 3 81 4 7208289 7208307 TTCCATTTCCAGCACTGAC 58 7205433 7208245 AAAGGACTCCTCTGTCTCAG 59 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 1 2 2 88 17 39511104 39511882 CAGATACATGTAGAGCTCTACCA 59 39512725 39512747 GCAGTCTTGTCTTTCCTAATCAC 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000079631 3 1 2 108 1 89542472 89543869 TGCGTCTTACATATGCGTC 58 89539123 89539141 CTCTGTCTTGTCCAACACC 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 3 2 3 80 8 90934444 90934464 CAAGAAGGAAAGTACAGCGAC 59 90932338 90934405 TCTTTCCCATTCACATTCAGAC 59 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000065328 3 1 2 88 15 40584586 40584604 TGAGCATTTGCTTCAAGCC 59 40584656 40586956 CCATTGCATTGAGCTTGGG 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 1 3 3 80 8 109511341 109511360 GGGAAGAATGAGCTATGCAG 59 109502103 109511300 CAATACTCAATGCTGGTAGGG 59 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000078838 2 1 2 88 14 84703624 84705231 TCAAACGTGGAATTGTGGG 59 84703554 84703572 GACTGGGTTCAAAGAGCTG 59 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 3 2 2 85 1 71253365 71253386 GATCTCATTACTGGAACAAGGA 58 71253431 71260669 AAACATACTCCCAATCAGGG 57 NA InUTR Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 3 1 2 70 8 91099641 91099661 CCTCCTCAGATATTCAATGGG 58 91160233 91160251 CTGCTCTGTGTAAGCTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 1 2 2 80 9 47166984 47167004 AGATCGTCTGAAGTTTCTACC 57 47167044 47168031 TTAATCGATTCAGGGCTTCTG 58 NA Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 2 2 2 80 8 48571693 48572556 AGAATTCAAGTCCTGGTGTG 58 48572599 48572617 CTAAGTGGTCCTGAAGCAG 58 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000026251 2 1 2 84 1 100404083 100404212 TCACTGGTTTCTCAGACCC 59 100404258 100404278 TTCTTAATGGAGGTCTTCCGT 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000087818 1 1 2 80 1 164913374 164913556 AAAGAGAAGAGGGTTGCGA 59 164913598 164913618 GCGAATGAGGATATCATCCAG 59 NA Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 2 2 2 80 19 26080673 26080692 GTCTACGCCATCTGTTACTG 58 26080485 26080631 TGTCAAGGTCTTTGAGTCTG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 2 1 1 80 1 67373387 67373405 CTGGGTAAAGGGACCTACG 59 67372315 67372334 ATTCACAAATTTCAGGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000049426 2 1 4 92 9 117651277 117651295 AAAGAGGCTCTCCACATCC 59 117651350 117660583 GTTTCCAGTTTCTCCTCAGG 58 NA Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 2 2 2 80 17 39546325 39547345 AATCTCTAGGAAGTGATCCGA 58 39547384 39547405 GATGATTTAGAGCATTGGTCCA 59 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 1 2 2 80 14 91593745 91594723 TTCCTCTGTATACTGGTCATGTG 60 91594761 91594781 TGGCCACAGACTTGATATCTC 60 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733 3 1 2 80 14 91584410 91588167 AATCTTCGACACAGAAAGCT 58 91588209 91588228 AGGTTGTTTCTTCTGGATCG 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898 2 1 4 83 10 39307416 39307434 TTACTCTGCTCTTTGCCCT 59 39211428 39307372 TGGAAAGAATTTCTGTTCCCAG 59 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 1 2 2 85 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273695 50277576 GTCTTCAGACCTAGGTGGC 60 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459 2 1 2 80 15 28538639 28540540 ACTTGCTCCAGAAGAATCAG 58 28540580 28540601 GTTCTGCTTTGAGTTCATTCAC 59 NA Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 1 1 1 81 8 38154249 38154267 ATCTTGCTGCTCCTACTGG 59 38153321 38153339 AATTGAGGTTGCCACACTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 3 1 1 82 8 38154249 38154267 ATCTTGCTGCTCCTACTGG 59 38153320 38153339 GAATTGAGGTTGCCACACTC 60 NA DesignNoJunction Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 3 2 2 80 15 48427741 48427761 GCTCTACAACTCCAACTACTC 58 48424774 48427700 AGGTAGGCGTAATACTTGTG 57 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000074278 3 1 2 80 2 173834556 173835734 ATATAACTGGAAAGGTGCAAGC 59 173834497 173834517 CATCACATGCATTAGCAGGTC 60 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 3 4 4 81 6 8257525 8257543 AAGGTCTCAGATGAAGCCG 60 8257585 8260436 ACTTCTGCATGATTTCTTCCAC 59 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 1 2 2 80 10 40262369 40265631 CTAAGATTGAGATGGAAGAGACTG 59 40262312 40262330 GCAGGTACTTGACCTTCTG 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228,ENSRNOT00000072911 1 2 3 80 9 10359313 10359332 ACTCTGATCATGAGGATGGA 58 10355226 10359270 TCTTCTCCTCTGAATGCGT 58 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 1 2 2 80 2 157750045 157750157 CAGCTAGAGCACTTCAAATTCC 60 157749986 157750007 CTTGAATCTCCTCTTCTGTGGT 60 NA Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 2 2 2 82 8 11904553 11909120 TTCTGGAAACTTTGTATGCTGG 59 11909159 11909181 GCGATCATCCAAGTAATGAAGAG 60 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 2 2 2 181 9 98551105 98551123 GAGAGTCTTCAGGAGTTGC 58 98550624 98550642 CATTGGATGTAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 3 6 6 84 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282646441 GAGGAAGCATCATTTGTGCT 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000085451 2 1 4 80 10 82095119 82095138 TTTGGTGAGAACCTTCACCT 59 82095057 82095077 TGGGTTGATGAAGGAGACAG 60 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 2 2 2 80 7 9826344 9826365 AGATCCTTCCCAGAAGAATCTC 59 9826090 9826306 TCCCATTTACACCCTATACCAC 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000068198 1 2 3 113 2 231063299 231074199 GATAAACAACAAAGCCAACGTG 59 231076465 231078910 TCAGTTGACTCCTTGTTTCCA 60 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336 1 1 2 80 2 187081537 187082175 CTCTCAGAGCACATTTCATATTCC 60 187086202 187086223 TCAAAGTGCTGAATGATGTTCC 60 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336 2 1 2 80 2 187081480 187081498 CTTGGAGGACAAGAAGCGA 60 187081537 187082175 GGAATATGAAATGTGCTCTGAGAG 60 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000024825 2 1 3 80 18 29480876 29482237 TCAAACACATCCACTTCTGC 59 29482277 29482298 AGGTATCTTTCGATCCTGACTG 60 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000067442 1 1 2 145 7 115908654 115908672 TACAGACACAGCAGATCCA 58 115908287 115908545 GGTATGAATCACTGCTGGG 58 NA InUTR Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 2 1 1 80 1 197675988 197676006 CTGGGTAAAGGGACCTACG 59 197677059 197677078 ATTCACAAATTTCAGGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000051640 3 1 2 89 1 100858668 100858767 GTCATGTTTAGCTACAGGAAGC 60 100858817 100858835 CTCCTGTAACCGGAATGGG 60 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 2 1 2 70 20 1815089 1815107 GCATGCTCTGATGCTTCTC 59 1814876 1814894 GGAACAGACTCAGTCCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 3 3 3 90 12 7464293 7464311 CTTCCCTGTGTCTTGTCGA 59 7464365 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 1 3 3 89 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738158 97738176 CCATGACATTCAGCTGCAG 59 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 2 3 3 91 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738156 97738174 GACCATGACATTCAGCTGC 59 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 3 2 2 81 14 7738622 7738640 TAGGAGTGTTTATCAGCGC 57 7737862 7738578 GATATCAAACGGTCTCCAGG 58 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000018147 2 1 3 84 X 62662426 62662447 CCAAAGTCACTACTATGAGTCG 58 62661624 62661744 CCATGCAACTGCATAAACAG 58 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000034472 3 1 4 81 19 755960 757536 TGATGAAACAACAGGAATCCC 59 757579 757597 GGTACACTAGCTGGTCCAC 60 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 1 3 3 80 7 116196983 116197238 GAGACCTTGAGGCTCTACC 59 116196921 116196942 GACATGATAGTTCTGAAGCACC 59 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162 1 1 2 83 13 90275159 90276013 GAAGGAGAGCAGATGATGTC 58 90276056 90276077 CATAGATTCTGGACTCTGTGAG 58 NA Rattus norvegicus 81 Calml4 ENSRNOG00000038202 ENSRNOT00000009716 3 1 1 80 8 67760474 67760493 GTTACATCATGGCGTCTGAG 59 67760533 67764935 AAAGCTCATCCACTTCTTTGTG 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770 2 2 3 88 1 193254246 193255710 GAAGGAGAGCTTTGGTGTG 59 193254176 193254195 GGAAAGCAGGAGATATGTGC 59 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058833 1 1 3 113 X 36969070 36992600 CCTGAAAGATGCTGCTTCC 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770 2 1 3 80 X 36971423 36974117 CACCATCTGCTGAATCGTC 59 36969057 36969076 TCGACAATACTTCGGAAGCA 60 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000061780 1 1 2 80 5 16975428 16975480 GTTTCTCAAACAGTTGATTGGG 59 16973172 16973192 AACGAAGTCATACATGTGTCC 59 NA Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 3 2 2 80 17 42813731 42813752 GAGCCATAGAGCTTAACTATGG 58 42812813 42813690 CAATTCCAGGCTGAATCCT 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 3 2 6 80 1 262013551 262013570 GGACGGATGAGGAATTTGAG 59 262012005 262013508 GACAAGCCACAATCTCCTC 58 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634 1 1 4 105 20 2058455 2059516 ACCAGAGCGATAAAGATCCC 59 2059584 2059602 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 1 2 2 80 10 38945291 38945309 AGGAGGCACAAGGAAAGAC 60 38945352 38945945 GGAGATCAGCCATCTCTGAC 60 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 2 2 2 80 17 45445205 45445223 TATGCAGGAAAGCACATCC 58 45441705 45445162 CAATGTGTTCAGTTCAGGGT 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 2 3 3 80 5 151051033 151052228 CTCATTTGACAGCCATGAGG 59 151050972 151050990 AGTTCCAGGTCTTGCTCAG 59 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 1 2 2 80 3 138387922 138389074 TTACAGTTCACACCAAGACCA 60 138387862 138387882 ACACAAAGTCTTCATGTTGCC 60 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 3 2 2 80 1 219155228 219155247 GCAATTGAGTTCATCAACCG 58 219152521 219155185 CACCTGTTTGATGACCTGG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000083413 1 1 9 128 20 2088057 2088288 GTTAAGCCGCTCAGTAGTC 58 2087654 2087965 TGTACGCTTTCAAGTGCTC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000077991 2 1 9 100 20 2078869 2079730 TCTACATAGTGGTGCTATAGTGTG 60 2078792 2078813 ATGACTTTCTCAGGAATGAAGC 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000016145 2 1 2 99 8 48724405 48724426 CTGGAATAGATTCTCTTCTCCG 58 48724092 48724345 AGCTCACATCTGATAGGCA 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231 1 1 2 80 9 55389605 55441054 GATTATGCAGATGTGATGCTG 58 55389545 55389563 GACCAGGAACAACGTAGAG 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231 2 1 2 80 9 55389607 55441057 ACAGATTATGCAGATGTGATGC 59 55389548 55389568 CAGGAACAACGTAGAGAACAC 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 2 2 4 80 15 34752194 34752212 ATGTGACCTTCTGTGGTGG 60 34752254 34753086 CAGTGATTTCCCTTCCATGAC 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000076751 3 1 4 85 1 267625476 267627836 AAAGCATCAGGTTCCTGTC 58 267627885 267627903 AGACGTCATCCAGGTACTC 58 NA Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 2 2 2 80 6 132270166 132272069 AACACTCCTCTCCTGTTCAG 59 132272111 132272130 GTCAGGGTTGAAAGTCAGTG 59 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577 3 1 2 81 13 47305416 47305588 GAATGTGTAATTGCCACATGTG 59 47305356 47305376 ATGTGTACAGGTCTTCCTCTC 59 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 1 3 4 80 3 8467361 8474434 ACTGCAAAGAGGATTCCGA 59 8474478 8474496 CTTTCTCTGAGTCGGCCTC 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000041921 3 1 4 80 3 8453647 8453665 TGTGGATGAGAACACTCCT 58 8453707 8454012 TTATGAGATTTCTGGCTGCTG 59 NA Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 2 2 2 80 9 65659959 65661737 GGAAAGATGTCCTCGAGGT 59 65661779 65661799 CTCGGGTTGTCTTTATTGCTC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000078039 2 2 3 80 1 32109974 32109994 CTTTGTGCAGAACAATGTCAC 59 32109361 32109932 GTGCTCCACAGGTTATCCA 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 3 2 2 80 8 112862172 112864051 ACCCTTTATATTGCGAGAGTG 58 112862112 112862132 ACTCCTTCAACTTAGTCATGG 58 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 1 2 2 128 17 44793463 44793481 TCACCAAGTACACCAGCTC 59 44756638 44756659 AGTCTCCACTCAGATAAGTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 1 1 1 161 3 81509454 81509472 TTCTCTACCTGAAGGCCTG 58 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 2 1 1 61 X 67564124 67564142 CCCAATGTAGTGGGAAGGT 59 67564332 67564350 TCTCTTGGCCTTCTTTGTC 57 NA DesignNoJunction Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861,ENSRNOT00000042654 3 2 5 80 X 64273681 64275843 AAACAGAAAGGTAGGGTTGG 58 64273620 64273642 CCATAATCTCTGAAGAACCTCAC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000084678 3 1 5 114 X 64251121 64275841 ACAGAAAGGTGTCAACTCTG 58 64251026 64251044 AAACACTTGAGACTGAGCG 58 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539 2 1 4 85 7 64707813 64709216 GTAACTGCCTCAAGTGACC 58 64709265 64709283 TCATCATGGCGGAATTTGG 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000035590 3 1 4 80 19 41271055 41271670 TGTGACATCTCAGTGAGGA 58 41270993 41271012 ATCCTGTTAGGAGTGATCCT 57 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000012162 1 1 2 80 8 111567385 111567404 AGCTCAGAAGCTTCTAAGGA 58 111569648 111569668 CATGAGCCTGTCTTGTGAC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000066384 2 1 3 84 2 41158037 41158055 GATCCTCTGGGAGTCACAG 59 41158102 41261850 CCACATCGAAACTGTAGGAC 58 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000081934 3 1 2 88 3 111447117 111447137 CCAGGTTCTAGTAAGAAACCG 58 111447186 111450088 GGTTTCAGCTTTCCTTTGTG 58 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263 1 1 2 80 13 99142353 99142371 ACAACCAATCGAGAAGCCT 59 99142413 99142987 TTGACCAGGAATTGCTTTCTC 59 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445 1 1 2 80 20 12884262 12885544 CTGAGTCAAGGATGTTCGG 58 12884200 12884218 TTTATGGCGTCCATGAAGC 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 1 3 3 80 6 8333845 8333863 CTGCATAGTGGTGAAGCTC 58 8332136 8333801 TCCTTCACCCATTCAAAGC 58 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000088720 3 1 2 80 6 72418165 72418183 GTGACTGCAGAAGATGGTG 59 72399414 72418122 AAACGTTATTGGTTCAGCCC 59 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 1 1 1 66 X 65335849 65335867 GGAAAGGTAAGAAGGCCCA 59 65335639 65335658 GGATTCTTGGTAGGGTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 2 2 2 80 6 27491772 27491794 GTCATAAGCATGTACCTGATTGG 60 27487518 27491737 CATCTACTCCATCTAGAGTGTAGG 59 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409 3 1 2 80 4 175852243 175852264 CTTGGCTTTATCATGTCATCTG 58 175852303 175855545 AGTTATTCGGACACTGTTCAG 58 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000039953 1 1 2 80 4 10460323 10467711 CTCCATAAAGGCTACTTTGTGG 59 10460264 10460282 GATCAAGTCTGGATGCCGA 60 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642 2 1 3 80 18 39470840 39476830 CAAGCTCGGAAATTAAGAAGTG 58 39476870 39476889 CTTTGCCAGATCCACTAGAG 58 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 3 2 2 87 9 71265631 71269653 GCAGTATATTGCCATTACCCAG 59 71269700 71269719 CATGGTTAATGTCTGCAGGC 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000078765 1 1 3 80 8 1611902 1611922 CAAGATATGCCTACTCTTGGC 59 1610419 1611862 CATCAGAGGCATAATTGTGGT 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996 1 1 2 139 4 113953122 113953630 ATCCCATCTGCTTCGAGAG 59 113952860 113952878 TGAGGACAGTCCAAAGCAG 60 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 1 2 2 80 11 64837652 64837671 GTTCAAAGGTACGAAGGAGG 58 64834628 64837609 GGTAGGGAAGTCAGCTCTG 59 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213 3 1 2 81 X 77529201 77529224 AGCTATACTTCTGAGAGTACTTGC 60 77529098 77529166 CAGTATATGCTCCTTTATTCGAGG 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064345 2 1 4 80 3 111728695 111728715 CCATAAAGGGCAAACTAACCC 59 111728756 111729344 TGTCCTCTTCTCGGATAGGA 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355 3 1 4 90 4 152482023 152482041 GTTCAAGTGTCCCAACCAG 59 152481258 152481970 CTCCCTGTGTACTACTCTCC 58 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 2 2 2 80 6 36949272 36949290 TCATGTGCCATTCAATGCT 58 36949332 36951670 TCTTCCCACTTCCATTATTGC 58 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 3 3 3 81 4 7133352 7133591 TTACCATCAGCACTTACAGG 57 7133635 7133653 CTTGATCTCTGGGTAGCAC 57 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000083937 2 1 2 81 2 237800451 237801344 TGTGCCAGCTAAGAAACAG 58 237801388 237801528 GGTAAACTTGACTGGTCGTC 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 2 3 3 80 18 31077936 31077957 AGAGTTTCAATATCCCTCTCCT 58 31077780 31077895 TTTCATATGTCCAGCACCG 58 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 3 3 4 83 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820456 37820474 CACAGCATTGATGGCTTCC 60 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 2 3 4 89 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342959 76342978 GAATCACATCGACACCAGTC 59 NA Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 3 2 2 82 10 10991804 10991825 CCTGAGTATGAAGACCAAAGAG 58 10991066 10991763 CCAGTTCACTGAATATCTGCA 58 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000091545 2 1 3 86 2 113833223 113845508 GAGTGCTTCAGCTCTTGTG 59 113845555 113845576 ATTTGTCACTTACAGGATCCTG 58 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629 1 1 2 80 20 8304487 8304505 GTAAGATGGTGGAACGCCT 60 8304548 8309448 ACAGTCTCTTTGCTCTTCGT 59 NA Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 3 1 1 61 4 118160262 118160281 GAGAATATCCGGAAGATGCA 57 118161100 118161118 TTGTCTTCACAGCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 1 3 3 80 15 51815493 51815513 TTCTATAACAGCCGACTTGAC 58 51815550 51817867 CATTTCCGAGTAGTAGATAACCTG 59 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 2 2 2 83 20 12658144 12658929 CGATTGCCTTCCAAGACTG 59 12658974 12658994 CATAAGGTTTCAGCCTCAAGG 59 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881 3 1 2 141 9 89064069 89064087 TAACCCTAGATGAGTCCCG 58 89059916 89063965 ACTAATTCACTCATGGACCG 57 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081695 1 1 7 121 20 2515589 2515684 CAACTTCCTTTACCAGGCTG 59 2515768 2515786 CTTACTGCCGTAGGACCAG 60 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000036233 2 1 5 80 5 101694278 101695199 AAAGAAATGTTGGCTCCACAG 60 101695335 101695356 TGCTCTTTCTGCTTCAATACTC 59 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181 1 1 3 80 X 65293270 65293767 CAGAAGCATCTTAAGGCCC 58 65293808 65293829 ATGGATCATGTCATTGGTAGTC 58 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773 3 1 2 80 6 25076760 25077526 CTTCATCAGGTGCAGTACC 58 25077570 25077588 CCACAAATATGAGGACCGT 57 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 2 2 2 88 7 67341727 67344076 ATTTCATCTGGACCGATTCAG 58 67341659 67341677 GTATATCCACGGGTTGCAG 58 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000011003 3 1 2 83 3 46601397 46621637 TCGAGTGGCGTGATAAAGG 60 46601332 46601351 GGGTCAGTACGGATTTACCT 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805 1 1 2 80 17 56960385 56962184 GAGTGCTTTAGATAAGCTTGCT 59 56960326 56960347 TCTACTTCATTCTCCGTCATCC 60 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000013851 2 1 2 81 1 157646321 157654754 CGACGATTCACTCAGTTACAG 59 157654796 157654815 CGCTTCGGTAGTAACTTTGG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 2 2 7 80 17 57067670 57079369 GTTGTTCAAGATGAGGAGACTG 59 57082586 57082604 TCGGATCTGGTAAGTTGGC 60 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269 1 1 2 80 7 29562231 29563277 CTGCCAAGTCAGTAAAGAAGTC 59 29562172 29562194 CTCATGAATGGACAGTACTTGTC 59 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009073 3 1 3 125 3 92736841 92736859 ACCATTGAGAAGAGCACCC 60 92712419 92736752 TGAGTCTCCATCACTGGTG 59 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994 1 1 2 80 19 25826957 25829132 ATCACCTTCATTCACAACGA 58 25826896 25826914 TTCAGAAAGTTGCTGTCCC 58 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 3 2 2 80 4 176007114 176007133 GATTGGTGTTGGATGTGCAG 60 176002977 176007074 TATTCATATTGGCCCATGAGGA 59 NA Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 1 2 2 80 10 43875439 43878840 TGGCCAAGGAATTAGGGAG 59 43878884 43878902 ACGTTCTTCAAGTTGCAGG 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000080365 2 1 2 93 18 57201211 57245331 ACACGAGCATTCCTTACCA 59 57201136 57201154 TCTCCTTTGCAGGTGTCTC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070 2 1 11 80 6 99095587 99095605 ATTCCCTCCAGACAGTTGC 60 99095646 99096184 TAAACTGTGCCAGAACAATCTC 59 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524 2 1 2 125 13 34250323 34251490 GACATCCGAGAGGAAATACG 58 34249216 34249234 TTTCAAGCACCTCTTTGGA 57 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174 1 1 2 96 X 84821722 84821741 TGTGATCGTAATAGGGACGG 59 84768455 84796562 GTAGCTTCTTGAATCAACATGC 58 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 1 2 2 80 1 185478309 185479014 GACCCAAGATCATCAAGTCC 58 185479056 185479075 GAACATTAAGGTTCCTCCGA 57 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160 2 1 4 80 5 104673507 104698077 TCACATTAGCAGGAAAGCC 58 104698121 104698139 TGTCCACTGTGACTGTAGG 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 2 3 3 80 5 117606774 117606795 GAACAGGAGTTTGTTTACAAGG 58 117605608 117606734 TTCTCCATAGAATCCCTCCA 57 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000065051 3 1 2 81 1 72656427 72656446 AGTTGTTTACCTGTCGTGGA 59 72656488 72657601 GTCATCTGTCCATGAGATGGT 60 NA Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 3 2 2 83 12 19434587 19434605 TTAGTGGGTCACTCGAGTG 59 19433820 19434540 CTGGTCAGTCACATTCCCA 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000065300 3 1 2 91 3 8948675 8949554 TTCTGATGCACCAGATTGTG 59 8949608 8949626 GATGTCTTCTGCTAGGGCT 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 2 4 6 80 14 44526462 44526480 GGGTCTCTGGTTGAAATCC 58 44526524 44526856 AGAACAAGCAACACCTGTC 58 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739,ENSRNOT00000083655 3 2 3 89 X 75291832 75291850 CTCTAGTCTCCATCTGCGG 59 75224256 75291780 ATTCTGTAGTCTGGGACAGC 59 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951 2 1 4 80 2 78158677 78158697 GCAAATCATCAAGGACATGGT 59 78164707 78247461 ATAACTTCCCAGCTTTCACTG 58 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 2 2 2 80 15 8746524 8746543 AGGTGGATGTTCTCAGACTG 59 8746584 8749388 CTCATAGGACAAACCAGATGC 59 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030324 3 1 2 83 1 219375807 219375826 GACCCAACATCCTTTGATCC 59 219375872 219379077 CTGGAAACACCTAGTCCCA 59 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466 1 1 2 80 7 143182495 143182513 TTGTCACCTACAGGAAGCT 58 143180875 143182031 TGCTCACAGATATGTTTACTGG 58 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 1 1 1 97 15 57505510 57505528 ACTACAAGGCTAAACGGGT 59 57568077 57568095 GATGGCCCGTCTACTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240 2 1 3 80 7 107479348 107479366 ACAGGTTCCCTGAAGTGTC 59 107479410 107480094 ACAACTCCAGTCCTGTCTC 59 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000081290 1 1 2 95 17 52364460 52364478 AGATGAAAGCAAGCAGGAG 58 52308169 52364398 TGATGAACAAGCTGATCCTG 58 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396 3 1 2 85 17 52555006 52555025 GAAAGTTCCATTGCGAAGTG 58 52477565 52554961 CTTTCATCCTCATTTGAAGTGG 58 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000077612 2 1 2 80 11 65076141 65076160 CATCCTTATCCCTCCTCACG 60 65073761 65076098 ATGTGGCTTACTGAGGCTG 60 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792 2 1 3 110 2 177855498 177857106 CTTATGTTCAGAACTCGGTCG 59 177855408 177855427 ATTGAGGAAGGAACTACGGC 60 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 3 1 1 64 8 67232095 67232114 TATGGCCTTCGTCCTTTCTG 60 67219109 67219129 CAAGTTCTGCTCTTCATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 1 2 2 80 1 89468713 89468731 CAGGATCAAATCTCCCAGC 58 89467652 89468670 CTGTTCTCATTGGGATCCAG 58 NA Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 3 1 1 77 12 18518439 18518457 CTAGGAATGCGTGTCATCG 59 18518696 18518714 AGACTCCTCCTGGATCCTG 60 NA DesignNoJunction Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 3 7 7 81 15 5507396 5507416 AGATGACCAACTGGATAAGTG 58 5464085 5507353 AAGTTTCTGATGCGGTAGG 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 3 7 7 81 15 5507396 5507416 AGATGACCAACTGGATAAGTG 58 5506894 5507353 AAGTTTCTGATGCGGTAGG 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 2 4 7 82 15 5415189 5508851 GTTTGAACTACAGGCTGAGTG 59 5415127 5415149 GGTCATCTTATGCATATCCATCG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000072624 1 1 2 144 4 126617846 126619418 GCATATTGAAAGCAATGCACAC 60 126617723 126617741 CTCTTGGCTGCTTGATGTG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384 2 1 2 132 4 126618810 126619418 GCATATTGAAAGCAATGGTGTG 59 126618699 126618718 TTTCTCTGTCACCTTCCAGG 59 NA Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 2 2 2 80 9 79649555 79649574 GAATCTGAAGCTGGAGATCG 58 79649615 79652301 GTTCCACATACCATCATCTCC 58 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 3 2 3 117 17 53963269 53965584 AATTACCAGGTAAACAGGTGAG 58 53966400 53966421 CTGGCATTATGCAACATTTCAG 59 NA Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 1 2 2 99 10 62023378 62025292 AGCTGTTGTGTATCTTGGAG 58 62022810 62022829 GACTTTGCTATATGGGTCGT 58 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458 1 1 3 83 19 49468479 49472218 AGAACCAGGTTACGGTCAG 59 49472264 49472283 GCTGTGAATACTGTGTTCCC 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 2 2 3 84 3 57837672 57840094 AGATTCCGATTTGGGACGA 59 57840142 57840160 TGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 2 2 2 83 12 11433878 11500483 GATCCGTCTGACAGTATTGTG 59 11501752 11501771 ACAACAATCTTGGCAAAGGG 59 NA Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 3 1 1 60 19 44234643 44234661 TTTGAGGAAGCTACTCCGG 59 44237108 44237126 TTTCAAAGTCAGGGCTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616 2 1 2 81 13 113915557 113917031 TCTGTGAACAGCTTTCTTGTG 59 113915496 113915514 CCAGGAAGTACGGGAAGAG 59 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000010421 1 1 2 97 5 39618414 39618432 TTCAGTTCTCAACCCACAG 57 39617743 39618354 AGTATGTTGATCCTCTGGGA 58 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000091493 3 1 2 109 3 123622764 123624296 TCCTCACTGTGTTCTATCCC 59 123622674 123622692 GTCTACTTGGCACAAGAGG 58 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000091424 2 1 2 113 18 3996045 4031688 CAATACAGAAATCATAGCCCAC 57 4033871 4033890 CTTTAAGTCATCACAGGCCA 58 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410 1 1 2 124 4 179305721 179339625 TGAAGGACTGCAGTAATGG 57 179298020 179305633 ATCTTTGGCCCTAAACGTC 58 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195,ENSRNOT00000088917 2 2 3 165 6 106153125 106153143 TCCAACCTAGTAGATGCCG 59 106159525 106162222 GAGAGGAGTCCTTACTGCTG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388 1 1 6 80 5 48011446 48011466 ATCAGTAAAGCCGTAGATGAC 58 48011508 48011953 CAACATCTGGTTTCCTCCT 57 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 2 2 8 156 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979763 1979782 TAAGCTTGAGCTCGTAGTCC 59 NA InUTR Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655,ENSRNOT00000074608 3 2 2 73 13 91954368 91954386 TGCAAAGGCTCTTGAAGAG 58 91959732 91959751 TCTGATGGCTTCCTGTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000086504 3 1 2 96 7 143382701 143382722 AAAGCCTCCAGACAGACAG 59 143382623 143382641 ACTTCCTGACTTGGGAAGG 59 NA Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 3 1 1 178 X 105419298 105419316 GGCACATACCTGAAGTGGA 59 105421460 105421478 AAAGAAGCGCATCACTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255 2 1 5 114 4 140269797 140269815 AGTGGTAAGCACTCTGAGC 59 140269892 140272580 CATCAACCAAGCAGGAAGAG 59 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000077307 1 1 2 123 5 171292144 171292162 CACATTCTCTGCAAGGCTC 59 171292635 171294169 CTCATGATTTGAGGCCTCC 58 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851 1 2 3 80 13 77031456 77031475 CCAGCAGTGATTATGAAGGC 59 77031516 77031860 TTTCATGCTCCTGATAGACCT 59 NA Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 1 2 2 82 4 180131576 180132031 CATAGAGACAGAGGCACCT 58 180132077 180132095 GGATACGGAGGTTACTGGG 59 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000009400 1 1 2 80 X 115764103 115764123 AGGAGAAAGCTTTCCTTAGTG 58 115764042 115764061 TGTAGTAGATCTCGGCCTG 58 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 1 2 2 202 2 84436729 84436747 GATTCCTTCTACCCTCCGG 59 84394086 84436563 ATAATAAGGCCAGTCCGGC 60 NA DesignRelaxed Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883 3 1 2 85 20 32087044 32090264 AAGCAGCAGGAGATTATCC 57 32086977 32086995 GGAGATTCAAATCGCTGGT 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000086297 1 1 2 92 4 116580362 116580510 ATTGTAGGGAACATCATCTGG 58 116580290 116580308 TCTGTGCAGTTCAAGATGG 58 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 1 2 5 80 13 78782829 78782850 ACAATTACGGCTAGAATTGCAG 60 78782888 78784482 TTACTAACAGCCTCTAGTCCAC 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000003689 1 1 5 81 13 78772428 78775013 ACCTTATCAGCAGGGTGTG 59 78775057 78775076 AGATTCAGGAGCAGATGGTG 60 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995 1 1 2 80 10 13556039 13557314 CTGTCAAACAGAAGAGGCAG 59 13555978 13555999 TCTCCTTCACACTGACAATCTC 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 2 2 4 86 15 8920795 8920813 ATGAGCTCTGCGTAGTGTG 60 8914483 8920747 TTCTAAAGAAACCCTTGCAGC 59 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 1 3 3 80 1 149150765 149151496 ATTTGACTCTTGGCAGATGG 58 149150704 149150725 TGATTCAGGTTCACTTTGTCTC 59 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089091 2 1 3 81 1 149154672 149154691 GTACTTACGGGACCAATGTG 58 149152278 149154628 CATAGTAAAGCTCAGGCCG 58 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 1 2 2 80 1 266113999 266114018 TACGTGGACACCTTTGTCTC 60 266114056 266114523 ATTCCAGAGGAGAAATACAGTCTC 60 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407 2 1 3 80 13 77640861 77640881 AGTATCCTATCGACCACCCA 60 77641844 77641862 GCCTGGTGATTGTGAACTC 59 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360 1 1 2 98 5 151104430 151107181 GCAGTCATTACAACAGCCAG 60 151104351 151104372 CTCCGTTAGTTGTGATTGACTC 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000048592 1 1 4 81 1 265552636 265560289 CTTGGAAGACAGCGTAGAG 58 265552573 265552591 CTGTTCCTGGAGTTGTTCC 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 3 4 4 80 1 265551780 265551801 CCATAGATGATAGACTGAGCTG 58 265551530 265551740 CAAGCATTTCCTCCTTTGTG 58 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 2 2 2 80 12 18692686 18692705 CAGTATGCAGATTTGCTGGT 59 18692746 18695672 CCCAAAGATGTCTTTCATGGT 59 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 1 2 2 80 1 265788833 265788851 CACGCCATATGGTAACCAG 58 265788671 265788789 TTGTCACACTCCTCTGTCC 59 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000080485 3 1 2 82 3 150380385 150380403 CATCAACATGGCTGGAGAG 58 150380446 150382547 AATCAAACAGCCTGTATATGGC 59 NA Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 2 2 2 80 3 176546370 176546391 TAGCCAATATCTCAGATGTGGT 59 176542926 176546329 TCTGGTTCTTCTCGTCCAC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000031331,ENSRNOT00000077458 3 2 3 103 6 108511909 108511927 AGGACACTGTGTCAACACC 60 108506898 108511845 TTGCACATTCATCTATGTCCAC 59 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000091057 2 1 2 81 11 65799329 65799347 GGAGCAGAATGAAACAGCC 59 65797609 65799284 ATCAACACAGAGGCCTCTG 59 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721 1 1 2 80 11 65786082 65786101 ATTTGCAGAGGAACAGATGG 58 65782664 65786039 CCTGAATAGGAACCGACAC 58 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000080517 1 1 2 104 X 122624671 122626318 CGTTTGACTTCAGTAGATTCCA 59 122626383 122626401 AAGAGCAATGGACGTTTCC 59 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 1 2 2 80 5 135413322 135415564 ACAGTCAGCTAAGTCATCTACAG 60 135415598 135415622 CTTATTCCAAATCTACCTTCTCCAC 59 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536 2 1 3 90 18 47606869 47606887 CTAGAAAGGAAAGGCGGTC 58 47606940 47630833 TTATCATCGTTGGCTTGTCC 58 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000088169 3 1 2 90 5 74106257 74107831 AAATGTCAGTAACCATTCCACC 59 74106188 74106206 GTCATCTCCACTGGCTGAG 60 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 1 2 3 80 6 108859285 108859305 TAATGGTTCTCAGTCAGAGGC 60 108859346 108862396 GCTCTTTCTGTTCTCGAAGC 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 1 2 3 80 6 108859285 108859305 TAATGGTTCTCAGTCAGAGGC 60 108859346 108862396 GCTCTTTCTGTTCTCGAAGC 59 NA Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 3 1 1 83 5 103230256 103230274 CTGCCTGGAGAAACTTCCA 60 103229267 103229286 CCCAGGATGTCCTTTAGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103 2 1 2 154 18 63357120 63357138 AGCTTGGAAGAGATCCTGC 60 63294479 63357003 GATTCGATAACGCGGATCTG 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 3 2 3 80 13 76533970 76544173 GGAAAGGTAGAAAGGAGTATGG 58 76533911 76533929 TTCACATGCTCTTGAGCAC 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000083682 2 1 3 80 2 243559814 243559832 CAAAGCCTCTCCGTTAACC 59 243559876 243560774 TTTACTCTTAAACCCGCCG 58 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484 2 1 2 83 11 81373815 81375121 TATTCACAGAATTGGCAGAGG 58 81373752 81373773 AGAATCCTCTTGTCTTCTTCAG 58 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484 3 1 2 84 11 81373815 81375122 ATATTCACAGAATTGGCAGAGG 59 81373752 81373773 AGAATCCTCTTGTCTTCTTCAG 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 3 7 9 80 4 14177576 14184199 TCTGACATTTGCAGGTCCA 59 14184241 14184261 AAGAACAAATCTGTACACGGG 59 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000089538 3 1 2 80 10 66760909 66762399 CGCATTATCACCAATAGCAC 57 66766223 66766241 TACAGCGTCAATCTTAGGC 57 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000047118 3 1 3 115 16 3674803 3674821 CAGGACTGAAGAGGGACTC 59 3674898 3674921 CGTTTCTTCGACTTCACTCAC 60 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000058885 2 1 2 92 11 72199995 72200013 GAGATCCCTGACGACATGG 60 72181376 72182194 TGAGCAGCCATATTCATGGT 60 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 2 2 3 85 12 17753011 17753029 GAGGTTAGAGGAGCACCTG 59 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 1 3 3 80 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900106 TCTACTGATCATCTGGTCAGC 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 2 2 4 96 X 71971511 71972296 TACTGTGATACACAGGTCCA 58 71972355 71972373 CTTCACTGGTGAATGGGAG 58 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486 3 1 2 83 5 107727498 107735724 CTTCTTGCCAGCATGTACG 59 107735768 107735789 CTCGTGAAGTGAATTAAGCTGG 60 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 3 3 3 84 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509310 49509329 TCTTCTTTGACCAGATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 3 2 4 88 20 3119759 3119777 CAGGACCTACTTAGAGGGC 59 3119828 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999 1 1 4 80 13 78520204 78521850 CTTACAGAAGATAGCTTCCAATGG 59 78520147 78520165 TGCCCTTTCTCGGAATCTC 60 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 2 2 2 80 X 124413026 124424513 TTAAGGATATGAACCCTACTCGTC 60 124412969 124412989 GACGCGCATAGTAAGAAACAG 60 NA Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 1 1 1 60 4 179481272 179481294 TCTTTACGAGGAGAAGTACTGAC 60 179481391 179481412 GATAGTCCCGTCCAAGATACAG 60 NA DesignNoJunction Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000067333 1 2 3 80 7 82058614 82058634 TGCTCTCATCATTCTGAACTG 58 81992028 82058574 ACATAACTAGCTCGCTTACTG 58 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 3 2 2 87 6 99388227 99388245 ACGTTTACTTCAAAGCCCA 58 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 2 1 1 60 1 228145648 228145666 CCACTGACTTCACAGAAGG 58 228146790 228146810 CAGTGAAGATAACCACCTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000044278 1 1 2 80 6 27373615 27373633 GACAGATGGTCTGCTACCT 59 27373676 27378386 TTCTCTTTGCCTTTGCTTCG 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000091985 1 1 6 108 19 33932881 33932899 CAAGTGTATGAGGAACGGC 59 33932969 33935001 GTTAACCAGTGCCTTAAACAC 58 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 3 2 2 80 7 97832017 97832035 TCGAAGAACACGTGTTCCA 60 97832078 97833155 AATTGTCCTCCATCACCCTC 60 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304 1 2 3 158 14 17548617 17551321 GGATGGATTTGCTGAGAGG 58 17551442 17552986 GCATTGGTATCCTGTACCAC 59 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249 2 1 2 80 1 167076958 167076977 AAGGTGAAGGTCCTAGAGGA 59 167077017 167083466 CTTATTCAGTTCTTCCACCTGG 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031 2 1 2 99 X 127804754 127822351 ACTCCAAGGACAAGACCAG 59 127822414 127822432 ATCAAAGCCACCATCATGG 58 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 1 2 2 80 3 82610382 82610400 GTTCAAGTGTCCTGAGTGC 59 82603425 82610339 TTGATGCACTCAGACCTCTC 60 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171 3 1 2 80 3 11322331 11325955 CATTAGACAAGAGGAAGGTGC 59 11325996 11326015 CACCAAGAAACATAGTGGCA 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777 3 1 2 125 11 83925085 83925627 TCTCTGCAGCACTTCTACC 59 83924978 83924997 CATTACTTGGGATCCAGCAG 59 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000078424 2 1 2 83 15 109394027 109394046 AACTATATTGGAGCCCAGGA 58 109390018 109393982 GGTTAGAAATCCCAGTTCCG 58 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848 1 1 2 84 X 135327991 135332362 GGGCAGGAATTTATTATGCCT 59 135327927 135327945 GGTGACAGTCCTAATCCCA 58 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 3 2 2 80 8 115570266 115570285 GGAACAAGTCAAGCAGTCAC 60 115570326 115573293 TATGAGCATGCCTTGTATGGA 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 1 3 3 84 8 72480033 72622306 TAATTCAGCTTTCATGACGCTG 60 72479970 72479990 CTTATTCTTCTCACAGCCGTC 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 2 3 3 85 8 72480033 72622306 TAATTCAGCTTTCATGACGCTG 60 72479969 72479989 ACTTATTCTTCTCACAGCCGT 60 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 2 1 1 101 3 9656845 9656863 GATCTGGATCCAGTGGGTG 60 9659021 9659040 ATGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 3 6 7 89 X 70645329 70646350 ACTTTACAGCCATTGTACAGG 58 70646401 70646419 AAATGTAGTGCCCAGACTG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000003741 1 1 7 80 X 70636782 70636803 AGGGATGATTGAGTCTAATCGG 60 70639520 70641185 GATGTCACTCCCTTCAGGT 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342 1 1 2 80 4 22619752 22619772 CTTTGGATATGTCAACCTGGA 58 22576782 22619713 AACATATCCCTGTAAACAACCC 59 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312 3 1 2 88 9 10262539 10272830 TCAACAGCCATCTCCAGTG 60 10272881 10272900 CAGGTAGTGGTTGTACAGGG 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 3 3 3 71 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82175281 82175299 CCGTGACTCCCATACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 2 4 8 86 4 8223894 8223913 CAACATATTGACTGCATGGG 57 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881 1 1 6 80 17 77211786 77211806 GTATGGAGATCACAGGACAGG 60 77211848 77213271 ATCAAGGACTGCCTACCTG 59 NA Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622 2 1 2 99 5 139385746 139386307 AATACCAAGAGCCTGTGGA 58 139395801 139395819 TTGAAGCAATGGACAGGTG 58 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 1 2 2 80 X 123495223 123496115 TTCCACCCTAACGTCTATGC 60 123496155 123496176 AGACACATCATAGGTTGGACTC 60 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325 1 1 2 181 12 22440512 22441242 CTTCACTTGTGACAGAGCC 59 22441387 22441514 AGATGACACCGAAGAGGTC 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026394 2 1 2 81 18 55811283 55811803 CTATTCATGTAGTGGACAAGTACAG 59 55811842 55811860 CCGGCAAGTGTACTAATGG 58 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000020733 3 1 2 90 10 14249053 14249071 CCAAAGTCATGGGTGTCTG 59 14249125 14249326 ATAGTGAAGAGGACCTGGC 59 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370 2 1 2 141 1 163114613 163114631 TTACTCAGCTCTGAAGCGG 60 163103731 163114509 ATCGCAGATATCCTTAGGCC 59 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031622 2 1 2 88 3 3837890 3837908 TGTCAAATGTCAGCCTTGG 58 3837960 3838058 AAATCCTCCTCAGGAAGGAG 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 3 2 3 80 3 113311141 113311161 GATGTGATCCTAAATGAGCCC 59 113310681 113311099 GAGAGGAAAGCCTTTGGAG 58 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000078746 2 1 2 80 14 18838969 18838990 CAAGAAGTTTGTCTCAACCCTC 60 18838422 18838928 TCAGCTGGACTTGTCACTC 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000086368 3 1 2 81 15 19811433 19811933 GAGAGTTGATAACAGCACGG 59 19811371 19811391 ATGAATCTCATCTTGGCTTCG 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000077962 1 1 3 88 1 260536548 260536566 CAGTTGTAACCGGAACACC 59 260530954 260536496 AAGAAGAGGCTGTGTCCTC 59 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 2 2 2 80 13 101011950 101012899 TATGCCAAGCTAAATGGTTCG 59 101012941 101012959 GATGCCACCTGTGAAATCC 59 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000060514 3 1 2 90 15 28496039 28496058 ATATTAACCTGGCTGCAGAG 58 28495446 28495986 AAGTCAAATGAGGAACCGT 57 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 1 2 2 93 3 175477710 175477730 GGTGGTAGACTACCTACTGTG 59 175476319 175477655 GTAGGAGACAGCTCGAGTG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 2 5 5 80 8 73060925 73060945 CATTATGTTTGCAACAGCTGG 59 73058135 73060885 GTCTTCAGAATGTTCTCCCTG 59 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000068594 2 1 2 119 19 42785531 42800103 CAAAGACCAGGAAGTCGGT 60 42781458 42781476 CTCTTCGATGAGAGCGGAG 60 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344 2 1 2 89 18 56078554 56078572 CTGGATGAAACAGTGGCTG 59 56078625 56080106 TCCAGTGGCTCTTTAGGTG 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 1 1 3 80 20 31268787 31273117 CAATTTACGCAGACAAGATGAC 58 31273158 31273176 CCAGTGATTCCTGTGACTG 58 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 1 2 2 99 4 178069484 178075008 AAGATACTGGGATCTCGTTGG 59 178069405 178069423 GGTACTTCTCCAGGTGCTG 60 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 1 2 5 80 9 43821829 43821850 AGACAACTTTCAGTAAAGGACG 59 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 1 2 2 80 1 102871536 102871554 TAGTAGCACCATCACAGCC 59 102871598 102872057 GGCACCATCTGGTTTACTG 59 NA Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 1 2 2 81 10 86518429 86519330 CGTAGCCTTTCAAGTGAATCC 59 86519373 86519391 ATTGGTGACGTCCTCACAG 60 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 2 2 2 81 16 2365906 2365924 GAAACTGGCTTTGAACCCG 60 2364341 2365866 GGTAGACTGAAGAACTGAAATCTG 59 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625 3 1 2 81 16 2361179 2363370 AGAGGTTGAACAGACATTTCAG 59 2361119 2361142 CCAATCATCCTGATATCTGTATGC 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 2 2 3 80 18 63016855 63029319 CGGGACAAATCATCAGAAAGG 59 63029359 63029379 TTTCTGTCACAAGATCTGCAG 59 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365 2 1 2 80 12 12652933 12658161 GTTTATAAGGCCATGAGCGC 60 12658968 12658988 CAATCTTCGGCAGAAATCCAG 60 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 1 2 2 84 3 3791477 3792895 CAAATACCAGTCCTCCAGGA 59 3792942 3792960 ATCCTCATCAGGCATGGTG 60 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210 3 1 3 82 14 114540418 114540436 TCTAGATGGAGCCTCTGTG 58 114540351 114540372 ATCTCCTTCTTCCCTTCCA 57 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000078050 1 1 3 80 6 122751489 122754142 TTGAGAAAGGAACTCAACAGAG 58 122754183 122754201 GACTCAGCTCCATTGTGTC 58 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440 3 1 3 80 6 122754138 122754157 CAGAGGCAATTGTTATCCCG 59 122754194 122759253 CATGTCATAGTAATCTTGACTCAGC 60 NA Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 2 2 2 83 2 236426622 236431084 CCAAGGAGAAGGGAATCGT 59 236426557 236426575 AGTGACGAAGGGTTGAGTG 60 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 2 2 2 80 X 72686321 72686339 GAACCTAGGCTCAGAGGAC 59 72686383 72686543 TCCTTGTTCCCTGACTTGG 59 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 2 2 2 80 1 214247654 214247674 CAACAACTCAGAAGAAAGGAC 57 214247715 214247964 TGCAGCTTCTTCATGTACTC 58 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537 3 1 2 86 16 21347236 21347256 AGACAGTTGTCATCATTCTGG 58 21345287 21345306 ATTTACAGTCCAGACCGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000088576,ENSRNOT00000013546 2 2 3 80 3 11230396 11230414 TGCAGAACAAGGGCTACTC 60 11230458 11234257 CATCTGGAGACCTGACGTG 60 NA Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 3 2 2 80 1 78077486 78078070 AGTCTAATCGTACAGGGCA 58 78078113 78078132 CATGTGGTTGAGTCTCTGTG 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000079732 1 1 2 98 5 145146374 145148310 GCATAAAGGAATATGGACCTCAG 59 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000089899 3 1 7 84 9 43740118 43740136 AGAAAGGAAGGAGAGTGGG 58 43740184 43743119 CACAGGGAACATCTTGCAC 59 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571 3 1 2 108 7 34781311 34789227 TGTGTCAGATGGAGATGGT 58 34780820 34780838 TATTGGAACTGAGGGAGGG 58 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000075382 2 1 3 139 5 159072076 159074518 CATCAACTTCAAGGGCCAG 59 159071955 159071973 GATTGTCCTTGTCGTAGGC 58 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068177 2 1 4 80 16 23475373 23487947 GTAATCTCTGTGATCATGGAGG 58 23487986 23488006 CTTCCATGGTCCCATATTCTG 58 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 2 2 2 80 X 110683627 110692687 GAGCCATATCAGACCTATTTGGA 60 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 2 2 2 80 13 48840350 48848609 GTCTTCAAGAGGACCCTGG 59 48840288 48840306 GATGACAGCAAACACCAGG 59 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 3 2 2 81 13 48828478 48833439 TGTTCATCAATGTGGTGGGA 60 48828416 48828435 CCCACAAACAGGAAGTTGAC 59 NA Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 3 2 2 80 10 45905791 45908375 AGAAACTCTGGTTGGTCAG 57 45908419 45908437 GAGAATGGTTGGAGCTCAG 58 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000044810 2 1 2 81 4 21895322 21897304 CCACGTCTCTTCAACAGAC 58 21897348 21897367 AAATGTTTGCAGTGTTCCAC 58 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 3 6 7 82 5 166101436 166116418 CTCGACCAGTATTATCAACCC 58 166101374 166101393 AGGTGTGAGACCAGTAAGAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000079919,ENSRNOT00000080888 1 2 7 122 5 166038413 166038431 GTATGACAGGGCAGGTGAG 60 166031447 166038327 TACACAAATGCCCTTCCCA 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902 2 1 2 80 6 124398057 124398077 CTCACATATAGTCTGCAAGCC 59 124389420 124395522 CTTCTGAAGTGCAAGTGCC 60 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000083132 1 1 2 80 5 35972266 35973552 AGTTCTGCAGAAAGGAAGG 57 35973596 35973614 TAGGATAGCTGGAACAGCA 58 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 3 2 2 80 1 13296848 13296869 CAATTAGACGCAATAAGGAGAC 57 13296907 13298091 CAAGGACATCCTTTAATTGCTG 58 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607 3 1 2 81 1 13212491 13262076 GTGGTTCTCCAGATCATGG 58 13262118 13262139 GCTTCAAAGCAATGTAGAACTG 59 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000005858 3 1 2 81 6 44240079 44240745 ACTGGTTTGCAGTATAGTGTC 58 44240788 44240806 TCTGCAGTAGAAGATGCAC 57 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 1 2 2 81 3 5121019 5121040 TGTCCAGAAAGTTGTAAGTGTG 59 5122313 5122998 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860 2 1 3 81 3 117430242 117430260 GTGCATGCTGAACATCTGG 60 117430305 117436112 GACTCCCAGACCAATTCCC 60 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 1 2 3 87 15 28311303 28311632 AGGGACAGACTCATTCTGTG 59 28311235 28311253 AATATCGCTGGACGTTTGG 58 NA Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 2 2 2 80 6 126216223 126216242 TCCCTTCTCTGAAGAACACC 59 126216281 126239812 AGCCTTCCAGGTACAATATAGAC 60 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000066191 3 1 2 154 5 27327120 27386169 TGATCGTACCGAGAAGCAC 60 27386286 27388321 TGGTGCCATTCGTTAATGTC 59 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000014733 2 1 2 87 4 147781981 147785027 GAGAGGAACATAATGACATCCTG 59 147785074 147788325 TCCTTCCCGATCTGTTTCC 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 1 2 3 80 7 71065582 71069218 AGTTGGGAACAGAGGACTC 59 71069261 71069280 TTGTTCATCCACTCATTGGG 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025045 3 1 10 82 9 95296579 95298734 TATCCCAGGAATTTGAAGCCT 59 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 3 3 10 81 9 95275557 95298734 TGTCTCAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 2 3 10 82 9 95246250 95298733 TGTCTCAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428 1 1 2 86 1 199199848 199199866 CCAGGGTTCTGAATCCGAG 60 199199913 199200941 CTATAGGTGGCTTTGGTTTCTC 59 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428 2 1 2 99 1 199210476 199215105 CAAACCAGGGCAAACAGAG 59 199215168 199215186 CAATAGGAGCCTCAGGGAG 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000036483 3 1 4 80 13 79784542 79784566 GAAACAGCGAAGTCTACCTG 59 79784481 79784500 CTGCCTACAACTACACTGGA 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 3 2 2 82 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000051908 3 1 8 83 6 64838569 64838587 ATGCACAAACATCAGTGGG 59 64838634 64852701 TTGCCATTGCCTTCTTACC 58 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 3 2 2 80 3 100389876 100389894 AATTGGCTACATCGAGTGG 58 100389935 100393603 AAGATCTTTATTGAGTCCCTCG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 2 2 5 80 1 15835980 15840754 CCGTAGATCAGGATTTGCT 57 15840797 15840816 GCATTCTTCCAATAACACGG 58 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000047666 1 1 4 83 8 53855023 53858139 AAGTACAGAGCGAAGCTCG 60 53854958 53854976 TAGGGACTTGAGCATGACG 59 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000064138 2 1 2 218 1 215135699 215135717 GTCTGTTCCTGCTCTAGCT 59 215143863 215143881 ACAACCTGAAGAGCAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 2 2 4 121 7 123637577 123637595 CAATGGACTGAAGGCAGTG 59 123637214 123637492 CAAGCACCACACCTTTAGC 60 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 2 2 2 87 1 84076216 84078101 ATGACAAGACCAAGGACCTG 60 84078151 84078169 GAGAATGCCTTGTCCAGGT 60 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673 3 1 3 110 20 3344959 3346158 CCTATGTAGCTCAGGTTCCC 59 3346230 3346249 CCAGGTATTTCCAAGGTTCG 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000091461 3 1 3 92 20 3346604 3346625 CAAGTTGCATGTTGACTTTAGG 59 3349787 3350389 GAACGTAGTAACATACTCCCTG 58 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 1 2 2 80 7 71136414 71138333 AGTTGGGAACAGAGGACTC 59 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 2 2 2 83 17 87933920 87956852 CTGGCTGGAAAGAATGTTCTC 59 87932530 87932548 TTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 2 2 2 80 3 5472620 5473079 TTCTGATGAGGAACCTGGC 59 5472558 5472578 CAAACATGCTCTTCCCTTCTG 60 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754 1 1 2 80 3 5462822 5462841 TGATGCTGGCAGATTATCCT 59 5462459 5462779 ATGGTGACTCCCAAGTCAG 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000079515 3 1 3 81 3 154935188 154936950 CTCCTGAGGGATTATGGCTC 60 154936998 154937016 AGTTGAGTCGCTGAGTGAC 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060254 3 1 10 81 15 32425453 32425474 TTCCTTCAACCTGAAGAAATCG 59 32614126 32806043 GGCATTGTTGTTATTGCCCA 60 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 2 2 2 122 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667143 51667161 TTCCTCTGTAGACTCCTCC 57 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411 3 1 2 86 1 218097797 218098354 GAGGAGTTGCTGCAAATGG 60 218097729 218097748 GTGTTCGATGAAATCGTGGG 60 NA Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 1 2 2 80 7 142759256 142759274 TCCAGGGAAGCAAAGTCTG 60 142759318 142759341 CCTCGTGGTTCACTTTCCT 60 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715 3 1 2 101 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755999 78756366 TGATGAAGACGTCTTCATGAG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235 2 1 2 84 1 215216069 215217281 AGTGGATAAAGCCTCAGTCC 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 3 2 2 80 6 125892611 125892630 AAGTGTACATGCCAAAGCTG 59 125892669 125893811 GTGAGTCCTTTAATCTTACCTGG 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 1 2 3 80 12 10781290 10785602 GATTCTAAGCATAAGCACCGA 58 10781230 10781249 ATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 1 2 2 103 4 157515291 157515976 CTTCAAGTTCTGCTGGGAC 59 157516043 157516061 GAGACAGGTCTGTCAGTGG 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 3 3 3 80 7 28728084 28728103 GATTTGGTGTTTCATCCCAG 57 28728146 28737443 TTCCAAGCTCCAAATCCTG 58 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000082669 1 1 2 80 17 76391274 76391292 GACAGTGACCATCAATGGA 57 76389529 76389671 ATCACTTCCACAAACTCTCC 58 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000036273 1 1 2 80 3 136767452 136767470 GCTTGTCTATGACCGACCT 59 136745765 136767410 TCTCAAATTCAAGTCCAGGGT 59 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 3 2 2 81 1 164302575 164302593 GGGAAGATGCAGAAGAAGG 58 164301987 164302530 CCAGATGTTTCTGCAGGTC 59 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000065644 1 1 2 80 15 3974338 3974360 GAGCCTATTGAACAAGAAGTCAG 60 3981770 3983830 TTGCTCTGTGGCATTAGGT 59 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534 2 1 2 80 17 90196320 90196340 TCAGTTATACTGGGTCTGACG 59 90193279 90196281 AACTTAGCATCAAAGCTTGGTG 60 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000081804 2 1 2 191 1 22255265 22269593 GATCATTAGCAGAGCTGCC 59 22252400 22253289 TTCCTTTGACGCTGTTCAC 59 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100 2 1 2 80 16 32371277 32386399 CAGAAGGACATGTGGTTTATCTG 60 32371219 32371237 TGGCTTTAATCTGTTGGCG 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000066634 3 1 2 80 20 46236742 46236765 AGTTCTTGGAATGGTCAAGG 58 46236805 46236826 TTTATCCAGATAGGGAGTTGCT 59 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350 2 1 3 80 14 33121166 33121187 AGACATTACGTTAAAGGGAGGT 59 33121228 33123803 GTTACTGCAACCCAACCTG 59 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000063977 1 1 2 80 19 38925003 38925022 AGAACTTGGAGCATGAAGAC 58 38925063 38925088 AGTGAACACAATCTTTGGTCC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000088679 1 2 5 80 9 81662727 81664256 GAGGAAGCGTTCAACATCTG 59 81664297 81664317 TGACACTGTGTTATTGTCCCT 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 2 2 3 84 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179840 143179858 GGTCATGAGAACAAGCCTG 59 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075982 2 1 4 98 2 208573813 208576688 GGTCCAGGTTTGTATAATGGT 58 208573735 208573753 TCAGGAAGAGGTGGTAGAG 57 NA InUTR Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000082974 1 1 2 80 10 85964776 85964794 GTGACAACTCCAGTTCCAG 58 85964348 85964732 TCATTTCGTTACCACTGGC 58 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000082974 3 1 2 80 10 85964772 85964790 CAACTCCAGTTCCAGTCTG 58 85964344 85964731 TTAGTCATTTCGTTACCACTGG 59 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 1 2 2 80 15 4002876 4003022 TGCTTAATCCGATCAGTGTC 58 4003065 4003083 GGCTCTCAAAGGTGTACAG 58 NA Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 2 1 1 74 6 126623039 126623057 GAACTGAGTGACTCTTGCA 57 126623484 126623502 CATTCTCCATGCTCTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000005687 2 1 2 81 10 109179982 109180000 AAAGACCCTACAGTGTGGC 60 109181263 109187057 AAGGGATTCCTGCTCACAG 59 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021189 2 1 2 81 3 11831588 11831606 CTGAATGAGATGCGCTGTG 59 11830138 11831549 TGAGAATGTGAGTAGAACCTATGAG 60 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814 2 1 2 80 1 264724776 264724797 GTGTGATATTAGGGAAGATGCA 58 264724836 264730056 TTTGCTGCTGTAACTTCTACC 59 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305 3 1 2 81 10 11093803 11093821 AAGAGGCATGTGACCTACC 59 11097888 11098073 GCATAATGTCATCAACGAAAGG 59 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962 3 1 2 93 9 112012754 112023478 GAAGACAGTTCAGAGTGCAG 59 112012680 112012698 TTTCATCGCTTGAGGACTG 58 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000011592 3 1 2 86 X 1712900 1713409 CTCTGCACCAGAGATTGTG 58 1712832 1712850 ACCTCATCTGAGGATGTGG 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000080114 2 1 3 93 14 22124663 22124682 TCACTGTAGCCCAGTATGAG 59 22124738 22124758 CAAACACTCCCGATCTCTG 58 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 3 2 3 102 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865898 120867149 AAGGATATGTCCGATAAACAGC 58 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023 3 1 2 80 9 74225139 74225157 CCTAAAGGCAATGCTGTCC 59 74225200 74231681 CTTGGACGGAATGATTGCTG 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037 3 2 4 80 7 51416130 51417412 CTGTTTCCAGGTATGACAGC 59 51416069 51416088 AACTGTATGAGGCAGAACGA 59 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860 2 1 2 80 19 57106237 57106511 CGTGCCCTATGGAAATATTCAG 59 57106549 57106570 TTGTCTAGGTACCACTTGAAGG 60 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000085089 3 2 3 80 14 34783086 34783555 GATTCCAGATGACAGCCAG 58 34783596 34783617 AATTTGTTCCTGTCTTCCAGAG 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 1 1 1 60 3 61686338 61686358 GAGTGGATGAAAGTGAAGAGG 59 61686690 61686708 TGGCTCCATATTCGGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 2 2 2 80 1 101413104 101413123 CAGAGAATGAGTTCTGCCCA 60 101413165 101413412 GTACTCGAACCATGCTAGGA 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000081051 2 1 2 145 5 133762248 133762267 GGTAGGAGTGATGACAACAG 58 133761559 133761807 CCAATCTTTCCTTCATCAACAG 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000085403 3 1 2 85 8 79685465 79687523 ATTTCAAGACCCAGTCATCG 58 79687568 79687589 GTTCTGAGTTTCAAAGGTAACC 58 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000024624 1 1 2 80 16 7088501 7089602 CTAACAGTGAAGGGAAGTTCTG 59 7089641 7089661 TGGTTACTGAAACAGGAAGAC 58 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403 2 1 2 93 18 61259172 61259190 CTTGGCTTCAAGATCCTGG 58 61259246 61308862 GATCAGATGTTTGGAGTGGA 57 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012 3 1 2 80 4 161690843 161690864 TATCTACACTTGGATCGAGGAC 59 161690902 161692276 TTGTGACGAATAGAGTTCTTCC 58 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008003 2 1 2 81 4 161690877 161690895 TTTAAGCACATTGCCAAGC 58 161691677 161692275 TGTGACGAATAGAGTTCTGTG 58 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000002557 2 1 2 87 11 87418313 87424007 GTTCTGATTGGTATCCAAGTAAGC 60 87418249 87418270 AGTGCTTTATACAGAGTCCTGG 60 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000002557 3 1 2 88 11 87418321 87424010 CGGGTTCTGATTGGTATCC 58 87418251 87418271 TGCTTTATACAGAGTCCTGGA 58 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829 1 1 2 81 10 51507921 51507939 CTTCAAGTCCACAGTCCAC 58 51503021 51507878 AAGTGGACAAGATCTGTAGAC 57 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549 3 1 2 80 11 73154325 73158034 CCAGCAGAAGGATTTCTCC 58 73158078 73158096 TACCCTTCCATGACAATGC 58 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000080834 3 1 2 80 11 73178006 73178026 ATCATCTCCAAGAGCTGTGAG 60 73178067 73178485 GCTATTTACAGCAGCCACTG 59 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476 2 1 2 82 9 94319010 94323058 CTTTGCCTCTGTGGAACAG 59 94323104 94323122 GATGAAAGTCACTGTGGCC 59 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476 3 1 2 83 9 94319010 94323058 CTTTGCCTCTGTGGAACAG 59 94323105 94323123 AGATGAAAGTCACTGTGGC 58 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844 3 1 2 112 14 33150506 33164070 GCAGGAAGCTACAGTTATGG 59 33150413 33150432 AGTCATACATGTCGTTGGGT 59 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871 2 1 3 81 13 49353556 49354821 GAGTACATCGACAGCAACC 58 49353493 49353511 GAAAGAGGTCTGTCAGCTG 58 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512,ENSRNOT00000044972 1 2 3 83 13 49407440 49413712 GATGGATCTGACCCAACCC 60 49407375 49407396 TCAATCAGGATGTTATCTCGGG 60 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000009977 2 1 2 81 5 124212391 124212410 GATAAGCAGTGTGAACAAGC 58 124212939 124214419 CAAACACAATGTACTGGTACAC 58 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 3 2 2 80 9 113584902 113584920 TCGAAGGAGGATGTTTCCA 58 113583687 113584858 GATCTCATTCTCCTGGGCA 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671 3 1 2 81 4 100765963 100767017 CATGGATCCTATAGCTGAGCT 59 100765902 100765920 AGGGCCTGAAGAGTTAAGC 59 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529 3 1 2 80 6 135231656 135232640 TAAGTTCAAACAGTCGAGAGC 58 135231596 135231616 AGATTGGTTGTCAGTAGAGGT 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021229 1 2 5 80 1 259406627 259406648 TTATCACTAATGAGCGCTTTGG 59 259402829 259406588 CAGGTCTCATCTCTAACCCAG 59 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814 1 1 2 80 10 72371766 72371785 CTGAAAGACATGGTGGTTGC 60 72369857 72371725 GAGAGTAAGATGGCCCATAGG 60 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814 3 1 2 82 10 72371770 72371789 TGAACTGAAAGACATGGTGG 58 72369859 72371726 GAGTAAGATGGCCCATAGGA 58 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 1 1 1 181 10 109786350 109786368 TTTCCACAGGTTCCCATCC 60 109786588 109786606 TACACTGGAAAGTCCCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 1 2 2 80 16 7040467 7043927 GGATTATTGAAGGAAAGTTGCC 58 7043965 7043986 TGCTCAACATGGTTCTTATCAG 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 3 2 3 80 4 161731674 161731694 CCACTAATCTTCTGAAGCTGC 59 161731540 161731632 GATCCTCAGGATCCACACC 59 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000078982 1 1 2 80 1 142145930 142148386 TCAGGAACTCAAAGGTCCA 58 142145868 142145887 TGTTGAGGTACATGGAAGTC 57 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685 3 1 2 82 6 135274884 135278853 CCCTACAGAATGGTGAGCC 60 135278899 135278917 TCTCAGAAGAGCTGAGGGA 59 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077 1 1 2 87 7 98432523 98432541 TTGGTCCTCACCAACAAGG 60 98437261 98437771 GCTGTTGCTCTATAGTTAAGGC 59 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000086409 3 1 2 84 3 140024185 140045046 CATTCTCAGCATGGTGAGAC 59 140045093 140045111 GTCATAGCCAGAGTCTCGG 59 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 1 3 3 80 18 70623818 70632435 ATGAGGAGTGTAAGGTCCC 58 70632479 70632497 AGTGTTGACTGTTGGAGTG 58 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127 1 1 2 80 9 100287278 100287298 CTCCTTCTACACAGACATCAC 58 100287337 100288017 GGCAACGTATGATGAATTACTC 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000083181,ENSRNOT00000079694 3 2 3 82 2 240642202 240642901 AAAGAACTTAGTGATTTGGCCC 59 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 1 2 5 113 20 4043789 4043807 TAGAGATGGCTCTGCAGAC 59 4043883 4045246 GGAATACGAAATCCCTTGGG 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000077402 3 1 3 139 X 142131466 142131484 AATCCAATGCCTGCAAGTG 59 142129518 142131363 CTTAAGCTGAGGCTCTGGT 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000083539 3 1 3 123 11 82760653 82760672 GTATCCTGGGACCTACAAGC 60 82759504 82760567 TGAGGCCAATCGCTTAGTC 60 NA Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 3 2 2 93 5 127165230 127213365 ACAAGTGCATGTTCGAAGG 59 127213422 127213440 AGGTATGGTTTCTCGCCTG 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 1 5 7 80 15 34691949 34691969 GTCCAGAAACTACAACGACTC 59 34691478 34691907 CCTGAGTCTCCCTTACCAG 59 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 3 2 3 80 20 35287336 35287354 AACAAGCTGGACAAACCAG 59 35279204 35287292 TGACACATGATGTTGACCC 58 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166 2 1 2 87 4 109474189 109474208 TGGACTCCATTGTCTTTCAC 58 109473536 109473560 CTCCTCTACGTAGGTCAGAG 58 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 3 2 2 81 19 56784321 56787156 TTTCTCACTGATTCTGACTCCC 60 56784261 56784279 GGTTGAGGTGGAGGTAGAC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459 3 1 2 82 1 114318332 114318350 GGAAAGGCTCTTGCATGTG 60 114318396 114320293 GCAGTGTTTCACCAAAGGT 59 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 3 3 3 80 15 4040901 4041093 AGCTGTATCAATGATGTGCC 59 4040840 4040858 AGGACGGTCATAAGCATCC 59 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 2 3 3 80 20 3991813 3991961 GCAGGAAGTTACATTGCTACC 59 3992003 3992021 ACAACCAGACATGGTTCCA 59 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454 1 1 2 80 18 6033954 6033973 GGACCAATACAGTCATGGTG 58 6030847 6033915 CCGTAATCATTATGACCATCAGG 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000038748 3 1 2 88 3 122001156 122057409 CTGTTACCTGTTGGGAAGC 59 122001086 122001105 GCAGTACAGAGAAACTGCAC 59 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000087592 2 1 3 105 9 118849389 118920879 GAAGGACTGACCAGGTTCC 60 118920948 118920966 GCTTTGATGTAGCTGCCAC 60 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 3 2 3 104 9 118843849 118920879 GCCAGTACCTACAGGTTCC 60 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000087680 3 1 2 83 1 276306833 276306853 TATTGTAAAGTCTGCCAAGCG 59 276305411 276306794 GTCCATCTTCATTACACATCTACTG 60 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 3 3 3 80 12 30069029 30069047 ATGATCCATACGCCAATCC 58 30051546 30068985 CTCCTTTATGGACCCTCCT 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000001200 3 1 3 80 12 30083037 30083057 CAACCAGTGTATGGAAGTTGG 59 30082911 30082999 ATCATCTCTTCAGGGTGTAAGAC 60 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000016133 2 1 2 80 10 66304362 66305345 TGAGAGTGGTGACTACTGG 58 66305388 66305407 ATGTCCAGGAAGTAGGTGAG 59 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 3 2 2 80 11 87916341 87916359 AAGACTCTTGAAGCACAGC 58 87915044 87916297 AAGTACCTCTCGGGTTCTG 58 NA Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 1 2 2 80 14 38230953 38230972 GGGAATCAGGTTTCAGTGGA 60 38231013 38231817 GGCTTCCGCTTCTTTAATCTC 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000089010 1 1 5 189 6 80272203 80277964 ATACAGCATTTGGCAGAGG 58 80278117 80281940 GAATATGGTTGGCCTGGTG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000089010 3 1 5 190 6 80272203 80277964 ATACAGCATTTGGCAGAGG 58 80278118 80281941 AGAATATGGTTGGCCTGGT 59 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466 1 1 3 80 5 127621400 127621418 ACAAGATTAGCGCTGTTCC 58 127620438 127621356 CCAGCTTGTTGAACCTGAG 59 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010929 3 1 2 83 7 31792250 31792268 CCGGTTACTGCAAACAGAG 59 31792312 31802344 TCGCATTTCTGATACTTGTTGG 59 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611 2 1 2 80 20 46668076 46668094 CTGTCCAAGAGATGTCCCT 58 46668137 46744168 TCTGATTCCAAGTTCCTCGA 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633 2 1 2 80 4 181426164 181426183 AAGATTCAGAAGGGACGGTG 60 181426223 181426445 CATCTTCCTTTAACATGTGCGT 60 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404 2 1 2 95 1 205013818 205028847 ACACCAGAACCAAGTATCCG 60 205013742 205013760 TTCCACAGTGCAGTCTCTG 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 1 2 6 127 10 53800352 53800372 AGTAAAGGAACTCACCTACCA 58 53800563 53801357 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 1 2 3 80 2 123348675 123348693 TTTCCAAATGCAGGAGGAG 58 123345086 123348632 TGAAGAGGTTTAACCTGGAC 57 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000089665 1 1 2 80 16 39994274 39995556 ATCCAGAGTTCTGGATCCTG 59 39994213 39994232 TGTCCTCAGAGCAAGAAGAC 60 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639 3 1 2 82 16 39994276 40025154 TAAGCCAAGGACAAGGATCC 60 39994213 39994232 TGTCCTCAGAGCAAGAAGAC 60 NA Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 2 2 2 80 17 4338155 4339220 TGGATGTTAAAGACAAGTCTGG 58 4338096 4338116 ACAAGAGTTGAACCACATCTG 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028249 1 1 7 86 1 83747903 83749336 TCTGGATTCCTCAGACTACC 58 83749415 83749433 AATGTGGCTATGGTGAAGC 58 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000029842 2 1 2 80 11 72805392 72807391 AACTGAAACGATTAGGCAGG 58 72805331 72805350 AATAGATCTGCAAGGGTGGT 59 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649 2 1 2 116 4 57539329 57540441 AACATTGATGGCGTTTCAGG 60 57521960 57521978 AGGATAGGCCAGCAATTGG 60 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255 1 1 2 84 10 35712032 35712051 CATCAGAGGATCCCAATGTC 58 35707559 35711985 TCAACCTCGATGCCTAGAG 59 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 1 2 2 80 3 15052824 15056826 ATCAGCAGGTTGATGTCTG 58 15056869 15056888 CTTCTGTTTGGAGTCTACGG 58 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 3 2 2 81 3 15052823 15056826 CATCAGCAGGTTGATGTCTG 59 15056869 15056888 CTTCTGTTTGGAGTCTACGG 58 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382 3 1 3 82 X 9891464 9949766 GTACAGAAGATCTAAAGCGGG 58 9949808 9949828 GCTATATGTCTCCAACAGCTC 58 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000007887 1 1 2 84 6 72489147 72496357 AATACTTCAGCAGAGTGAGTG 58 72502369 72502390 CCATTTAACACCATCTCATCCA 59 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000088041 2 1 3 80 2 199891648 199891672 GATTCTTTGATTCAGGGCCC 59 199891587 199891610 GTGAGAAGATAACAAATCCCTCTC 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 3 2 3 83 2 261397313 261399390 TTAATTCACTCCGGTGGCT 59 261397248 261397266 TTCACCAAGTGGTAAGGCT 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862 2 1 2 153 1 216725488 216728485 AATTCCGAATTCACCTTAGCC 59 216721978 216722853 CTTCCAATTCCTCCTCTTCAC 58 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104717039 104718645 TCGGTCTTAATTCATGGTGC 58 104716978 104717001 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 1 1 2 80 3 114921001 114921020 GGATTCAAGATAGAGTGGCG 58 114921061 114925704 ATCTGTAGGAGATCTCCTTGC 59 NA Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 3 2 2 80 16 36055338 36060148 CAGTACTTCAAGAACCTGCAC 59 36060190 36060208 CACTTGATGGAGGACCTCG 60 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000080701 2 1 2 80 5 126863505 126864623 TGAGTTTAGTCCAGGCTACAC 60 126864664 126864683 CCAGAATCACTTCTGTCCCT 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000021858 2 1 2 84 1 177154013 177154032 CAAAGTCAAGTACATGGCCA 59 177154078 177166146 CAGGGATTCCTGTTTCAAGG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595 2 1 2 80 1 177169905 177169924 GAGATGTTCCAGCAGAAAGC 59 177169967 177172448 GAAGGCTGAAACGTACTGG 59 NA Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 1 2 2 80 13 26988202 26988220 GCAAAGCATCTGACAGCTC 60 26988261 26988587 GCTCATTTGTAGATTCACCCTG 60 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000050676,ENSRNOT00000049917 1 2 3 109 14 760108 761781 ATTGGACATCCCAACAAGG 58 760017 760035 GCCATGACCACAGTTACTG 59 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258 1 1 2 80 7 59928765 59930705 AAACAGCAGGATGTTGATCAG 59 59928705 59928724 GAAATATCCCAGCTTTGCCA 59 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330 2 1 2 80 4 157153530 157153551 GTCTTTACGTCAGACTTCTCCA 60 157150887 157153492 GCATTCATTTACATCTACGGCT 59 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 1 3 3 130 6 34029246 34053191 GGTGGTCAACCTATTGATGG 58 34053283 34056188 AGGCATTATCAGCCATTCTC 58 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 3 1 1 60 10 14628980 14628998 ATGACTATCCGTCCTCACC 58 14625075 14625094 ACGTTTGGATGAAACAGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000084986 1 1 3 125 13 52668964 52671471 AACAGGAAGAGGAAGACTGG 59 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000084986 2 1 3 129 13 52668005 52671468 GAGGAACAGGAAGAGGAAGAC 60 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695 2 1 3 89 15 109755737 109755756 TATGACATAACCCAGCATCC 57 109754808 109755688 CATTGTAACCTTGACAGATAGC 57 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 1 2 2 80 8 114604201 114606647 TCTGCTCTGATAAAGGATGTG 58 114604141 114604159 TTGTAAGCCCTATGCTTCC 57 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 2 2 2 83 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861227 58861246 AATTTCTTCAGCTCGTGGAG 58 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000033863 1 1 2 115 3 172722992 172734964 TGAGAGCAGGAGTTTCTGG 59 172800973 172800993 GAGGGAATGTGTTTGTTACCA 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000002636 3 2 5 80 11 78240625 78240645 ATGTCTGGACTATTTCACGAC 58 78237916 78240583 AGACTTGCCAAATCATCCA 57 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000087906 1 2 5 87 2 1508855 1510438 CAATCAAGTGAGCCACCTG 59 1508313 1508333 CATGCTTAGGAAGAGTTTGGG 59 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885 3 1 2 80 16 39849490 39852125 ACTCGACAACATCAAAGAGAC 58 39852166 39852185 TTCTGGGAAACAAATGCCAC 59 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240 1 1 2 80 X 128613783 128613803 GCCTGAAGATAGCTTCATGAG 59 128613843 128616963 GTACCACGCTGATTGTAATCC 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 1 2 2 81 6 132551492 132551510 CCGGATCAACATCTACCAC 58 132551555 132555560 GATCACAACCTGCTGATCC 58 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 3 2 4 81 8 117890854 117890872 TCAGTTTGCTGCAGATTGC 60 117889579 117889799 AGACAGAACTTCCTCCACAG 59 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 1 2 2 80 10 86828576 86831055 CCACTCTCCGAATGTAAATCAC 59 86831092 86831114 CGAAATGACTTGGGATATGTGAG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000067545 2 1 7 83 3 48276240 48276261 GAAGAACAAAGTATGCTAGCCA 59 48276305 48285908 CTTTCGGCTTTCAATGCTG 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000067545 3 1 7 103 3 48265695 48265715 AAGAAACTGGAAGATGCTGAG 58 48276296 48285901 CTTTCAATGCTGTAGTGTCCC 59 NA Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 1 2 2 80 11 81785801 81789548 CGTTTGACAAAGGAGCAGAG 60 81789589 81789609 ATGTCCTGTACTAACCAACCA 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 1 2 6 80 1 41532721 41561428 CTCTTGGACAGGAATCAAGG 58 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000083674 1 1 4 80 17 34709852 34720927 CATTGAAATTGAGAACCCTGGA 59 34720968 34720986 TGGTAGCTGAGGTTACCTG 58 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 3 3 4 82 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832555 34835976 CAGATTTCAAGTCTGGCCTG 59 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 1 2 2 101 7 12543591 12545668 TAGAGAAGTCTGGTGCCTC 58 12545733 12545751 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 3 2 2 104 7 12543588 12545665 ACGTAGAGAAGTCTGGTGC 59 12545733 12545751 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 2 2 2 80 1 64020997 64021238 GCTAAAGTTGATTGGAGAGTATGG 60 64020940 64020958 TTACGAATCTTCGCCAGGG 60 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 3 2 2 80 10 55925363 55925383 GAGTACAAGCTGATGTATGGG 58 55925425 55925783 GCCATCCTTCATGTCTAGC 58 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 1 1 1 143 1 78808853 78808871 GATCTGGCTCCTATGGACG 59 78810332 78810350 GAGCTGAGAAGGATCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978 1 1 2 80 11 87373767 87373786 GGTGCCTGCTTCAATATTGG 60 87373826 87373938 AATCTTCACCTGGAACTTATGC 59 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000055318 2 1 2 80 2 252808131 252809089 GTCTTTCCAGTGGAACGAG 58 252809133 252809151 ACAAACAAGGTCTGACTGG 58 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000046611 3 1 2 86 1 87203129 87221448 TAGACGTCCACGAGAACAC 59 87202125 87202144 CAGAATCCTGCTTTCTGGGA 60 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006 1 1 2 81 1 87206417 87206439 GAGGGAAATGGTAACAACTATCC 59 87203118 87206378 GACCATCAATGGTGTTCTCAG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 2 4 4 80 20 4586977 4586995 CATGCTGTCAACTACCACG 59 4587039 4587153 CAGGAACAACAGAACGCAG 60 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000051385 3 1 3 83 5 134492911 134492929 GCAAAGGCAATGGCTACTC 60 134492976 134494126 TGAAACTGCAACTTGTGCC 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 2 3 3 101 6 136151626 136151646 GTTCTGTGGTCTGTGAATCAG 59 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 1 2 2 80 7 144058467 144058485 TTCCTTGAGGATGGCTCTG 59 144058529 144058663 GGTTTGTACTGGCCATCCT 60 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822 2 1 2 155 6 55677875 55686719 TCGCTCCAGTTGAAATCGT 60 55686838 55687930 AATTGGCATTCGCTTCCTC 59 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 1 2 2 80 7 117059485 117059503 GACTCTTGGCATTTGCTCC 59 117059547 117059642 GGCAATGGAATCTCTGCAC 59 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 2 2 2 89 1 98517551 98517665 CGTGATCATCATGAAGACCC 59 98517481 98517499 TAATCCAGGATTGTGCTGC 58 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000079824 1 1 3 101 6 103379371 103380868 CTTTGACCGGAAGAAGACG 59 103378141 103378159 ATGATCCGGGCAAATTCTG 58 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000085304 2 1 3 87 1 198304249 198304267 TCAGAGATGCTCAGCTCAC 59 198303223 198303242 AGTTCCTGTTGGAGCTCTG 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000085304 3 1 3 88 1 198304249 198304268 TTCAGAGATGCTCAGCTCAC 60 198303223 198303242 AGTTCCTGTTGGAGCTCTG 59 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 3 2 2 80 4 133120718 133121615 TGGAAGAAATAGGTGCTTCC 58 133120657 133120675 TCTGCTCAATTTCCCAGTC 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 1 1 3 80 12 21745554 21749650 TTGAACAAGCCATGGTCCT 60 21745492 21745512 CCTTCAACAGATGCTTCTCAC 59 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 1 2 2 80 19 61338473 61393962 GACTGCAAGTATGACTATGTGG 59 61394002 61394021 GATCTTCCCACAGAACTTCC 58 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 2 2 2 80 19 61441968 61449961 AGATAACAGATTACCCTTGCTC 58 61450001 61450020 GGTTGGATGCTGTAATCTGG 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000091216 3 1 5 80 10 56194532 56197210 GCAACTTCATCCTTCAGATCC 59 56197249 56197270 CATCCTTTAATTCCAAGGCCTC 60 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000008312 3 1 2 80 6 56036506 56158175 ATCACTCACAGGATGAGCA 58 56158217 56158237 TTCTTTCCTTAACCAAGGCAG 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971 3 1 2 80 9 15642975 15642994 ATGAAGTGGGTACCATTGTC 58 15640626 15642934 CTCATCAGAAGTGGTTATCGT 58 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209 1 1 2 80 2 12111950 12111970 GAGAATATGAGCGATGAGGAG 58 12112011 12112798 CAGTGTAGCTTCATTCTCCC 58 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 1 2 2 80 5 134651676 134651696 CACTGTCTACGCAGTTATTCC 59 134652943 134654092 GCACAAAGAAATGTTGGGC 59 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 1 2 2 96 10 70328334 70332639 ATTTCAAGTGTCAGCAGACTG 59 70328258 70328282 CTGGCTTATTAAGTTCTCTAGTCTC 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080590 3 1 7 84 20 4091792 4095007 GAGATCTCTGATAGATTCCTTACAG 58 4095091 4095109 GGAGGTTGTGGTGTTTCAG 59 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000061858 3 1 2 80 4 9763862 9773126 TCGTCCTAGTAAGCACTCG 59 9773170 9773188 TTCGGTTGTAGAAGTGCCT 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000028329 2 1 2 80 1 217789475 217789494 AACGGAAGCAGATGAGACTC 60 217786776 217789433 TGGGATGATCACAGCTACTC 59 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 3 2 2 80 7 144316258 144316279 AGTTAGAGGATGACATCCAGAC 59 144314476 144316218 TCACCATGTCTCTAACCCTG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 9 18 60 1 43508740 43508763 CTAATACAGTGGATCGAACTAACC 59 43527510 43527528 AATGGAGCAGTTTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 3 2 18 82 1 43637345 43637363 GGCCCAGATCTTTACAGGA 59 43637409 43697833 CACAGGGTCTAGGTCTGTC 59 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 1 2 2 80 1 19089984 19092966 GTTCACTGGAGAATGTTTACAC 58 19093007 19093025 TTCCGACATCAATGGACAC 58 NA Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 3 2 2 80 18 25651840 25652243 GAGATGAGAAAGCTCATGCC 59 25652285 25652304 CACTTCCAGCTGTAATTGCC 60 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 1 3 3 80 7 12665244 12665342 AGTTCTTCCAGAAGGACCG 59 12665182 12665200 GCAGCTCAATTAGTGCCTG 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 2 3 3 80 7 12665248 12665348 GCTTCAAGTTCTTCCAGAAGG 59 12665188 12665206 CAATTAGTGCCTGCACTGC 60 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941 1 1 2 80 9 82603313 82606410 GCATGACACAGTACAGGGA 59 82606452 82606472 TGACACTCTTGTAGACACCAG 60 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000018763 2 2 3 80 1 233140416 233141941 ATCAGTGTGCTTGAAATGAGTC 59 233140357 233140379 CAATTCCCTCACAAGATTCTCTG 60 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000018763 3 2 3 80 1 233140416 233141940 TCAGTGTGCTTGAAATGAGTC 59 233140356 233140377 GCAATTCCCTCACAAGATTCTC 60 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 2 2 2 80 11 86518130 86518148 CAACCGCAAGAACATCCAG 60 86518192 86518304 ACTGGCCTCAATCCATGTC 60 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 2 2 2 140 X 15449237 15451595 TCAAACATCTGGAGCCAGAG 60 15451698 15451890 AAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000086682 2 1 2 80 9 112374956 112396183 TTCTTAGAGATGGATCCAGTCTC 59 112396223 112396241 TTTATGTTCACAGCGCCAG 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157 2 1 2 81 1 85118919 85118938 AAGCTCGCAAGTACTTTGAG 59 85118981 85119274 CCCTGGTAATCCTTCCTGAG 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337 1 1 2 80 2 250726901 250726923 CCCTGAAGGAGATAACATTATGG 59 250722689 250726861 TCCTGTTCAGACTTCAGCC 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337 3 1 2 82 2 250726927 250730105 AAAGTTCACAACTAAACTCGGC 60 250726866 250726885 TACATGCAGGAAGTTGAGCA 60 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000086349 3 1 2 105 1 174440200 174440222 TTATGTCCAAACACCTTCCA 57 174440114 174440133 ATACATTCCAGGCTTCTGAG 57 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000085609 1 1 2 99 8 117140683 117144411 TGCAATCAAATGGAGCTGG 59 117144474 117144492 TTTCCCAGGTTTCCGAGTC 60 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817 1 1 2 80 12 40510566 40514898 GAGAAAGCCATCAAGGAGAC 58 40514941 40514959 ACCACTAATTCCAGCTCCC 59 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366 1 1 2 109 9 114994861 114994879 GTGTCTTCACCGTCATCCT 59 114990098 114994612 TGGGTCTCATCTAAGATTGCA 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717 2 1 2 81 18 63882702 63882722 GAGAAACTGCTGGTGACTG 59 64015852 64015870 CGACAATGATGAGGACCTG 58 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 3 3 3 80 2 124134790 124138860 TGGAGAAGATATTGGAGACACAG 60 124134732 124134753 CTCAACAGAGACCTGAATTCTG 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017568 1 1 3 80 16 49554065 49562046 AACCGCAGGAATTCAAACC 59 49554003 49554022 TGTCATCAATGTTTGCTGCT 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327 2 1 2 80 7 113714386 113714405 CTTGGAGAACATTGGACTGG 59 113703731 113714345 CCGTACAACTTCTCCTTAGTG 58 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000082102 2 1 2 80 4 168195966 168198119 CATAGGTCCTACAGCTACAGG 59 168195906 168195924 GTCACAGACATCAGTGCTG 59 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 1 2 3 80 3 121835304 121835328 AAAGAACTGCTATAGGGAAACG 59 121831738 121831759 CCATAGCTTGCATCATAGAAGG 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 2 2 2 86 8 85513346 85513366 ACATACAGCTACTAGAAGCCA 58 85513414 85518615 TCTTAAATGCCTGCAGCAG 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354 1 2 3 80 11 34067850 34070689 ACTATTCCTTAAGGGCTTACTG 57 34070730 34070748 TCTTCACTTTCTGTCCACG 57 NA InUTR Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354 3 2 3 80 11 34067851 34070690 CTATTCCTTAAGGGCTTACTGC 59 34070730 34070749 GTCTTCACTTTCTGTCCACG 59 NA InUTR Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548 2 1 2 80 19 57455885 57471138 CATGCTCCAGATTCTGTCC 58 57455823 57455842 GAGGGCTGAAGTTGAATAGC 59 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 3 2 2 80 5 122683699 122683720 CGTTATGATTTCTTTGCTCAGC 59 122683759 122687651 ATCCATGTAATCCGTTACACC 58 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 3 2 2 88 4 170775858 170778823 AAGAAGTCAGGTCTGAGCG 59 170775788 170775806 TGAAGAGGAGTCAGCTCCT 60 NA Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 1 2 2 80 5 59148423 59148442 CACACCTGTTATCCACTTCG 59 59148107 59148201 CTGCACCTCTTTACAGATCTG 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 1 2 2 80 1 133353524 133372418 AGAAAGAGGAAGAGAAGGAGTC 59 133353465 133353486 GGACAGTGGAAACAATATCCTG 59 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002477 1 1 3 80 11 88874546 88875536 CGCGAGACAAGTTAATTCAG 57 88877142 88877160 GACCACCATCTCCAATTCC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000045553 2 1 6 80 7 132099959 132099978 ATATGCTGAAAGAGAAGGCG 58 132095052 132099917 TGTCCTCTTCATCTTCTTGC 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 3 3 5 99 20 5416877 5416898 ATTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154 1 1 2 81 4 145453536 145453556 CTGATCTCCTAAACTCTGCTC 58 145452626 145453493 CATTCCTCGGCTTCATCTG 58 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000067135 2 1 2 111 13 69962610 69984343 GCTTGTGGAGAACGTATGG 59 69949114 69949132 CTCAGGATGGAAGCAATGG 58 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714 3 1 2 91 5 62241341 62247734 AACCGAGATACAGAACACCA 59 62241269 62241287 TCTGTGACGACTCTTCCAC 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 2 4 4 80 16 54374576 54374595 GTTGGAGATTGAAGCTAGCC 59 54374635 54375686 TTCTTGATTTCTGAAAGGGAGG 58 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544 3 1 2 91 8 85791702 85791981 AAGAGTGGCATACAATGTTGTG 60 85790037 85790058 GCATCTAGCTCTTGAAACTCTC 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 3 2 3 93 3 29868417 29868435 TGGCATGTATGCATGTGAC 59 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 2 1 1 60 9 18331178 18331197 GCATATCTGGCGTATGAGAC 58 18330040 18330058 CTTGCCTCACAAGAAGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 3 2 2 80 10 87298261 87298374 GGTTCAATGAGAAGAGCAAGG 59 87298201 87298222 TGATTTCACTCTTATGGCTGGA 60 NA Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 3 2 2 85 17 31442647 31442667 GAAGTTACCATGGAGACAGTG 59 31442710 31442966 CCGAGGCACATATTTATTACCAG 60 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631 1 1 3 80 16 10921116 10921134 GAATCTTGGCCCAGATGAC 58 10915989 10920605 CAAACCTTTCCCTTGACCT 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 3 3 3 80 6 76502625 76511221 TATGAAATGGACAAGAGGTTGG 59 76502566 76502587 TAGTGTCTTTAAAGGTAAGGCC 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864 1 2 4 81 1 128226694 128226713 AATGAACAGTCGGAAACCAG 59 128217307 128226650 CCTTTGGGCATTAAGTGGG 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 1 2 2 80 11 459192 460551 TTCTTACGTAAACATGATGCCC 59 459133 459155 GTACTTCATACCAGATGCTATCC 58 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000040065 1 1 2 82 11 782888 782906 CTCCATCCTCATCCTGCTC 59 764396 782846 GTAGATTAACTTCGTTGGAAGGC 60 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 3 2 3 82 4 22111747 22111766 TACGAATTCAGGGAGTCGTG 60 22111810 22115360 CACCACAAACCTGTCATCTC 59 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000049857 1 1 2 93 3 122699772 122701346 AAGATCAAGCCAAAGAACTCC 59 122699699 122699717 TCATGGAGACCAGGTTCTC 58 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388 3 1 2 83 1 25734960 25734982 AGGCAAAGCAGAGAAACCT 60 25720427 25720445 GCTGCCATCTTTGTCTCTG 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 1 3 3 80 12 41341724 41342698 CTGAAAGTGGTTAAGGGTGG 59 41342739 41342759 GGTGAAGAGAACAAGTGTACC 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000072024 1 1 3 81 12 41361454 41361472 AAAGAAGCAAAGGAGTGGC 59 41361517 41363039 TCTGTACTACCTTTCCCGG 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 1 2 3 83 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000015223 2 1 2 80 9 20114208 20114226 CACATGTGAGTTCGTCAGC 59 20111972 20114165 GTTAGGTTGGCTACAGAGGT 59 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 2 2 2 80 7 70564752 70565870 CTGGAGACTATGAAATGCTTGG 59 70565910 70565929 CTTCATGCAGTAGTCGTTGG 59 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000024465 2 1 2 102 1 255579498 255582142 TTCCTCTTAATACTCGATCGTC 57 255582204 255582223 GAAGTTTCACCACTTCTCCA 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000024465 3 1 2 103 1 255579498 255582142 TTCCTCTTAATACTCGATCGTC 57 255582205 255582224 TGAAGTTTCACCACTTCTCC 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045020 2 1 5 80 2 258794922 258800046 CCCTTAATCAAGGACATTCACTG 60 258794864 258794885 TGTTGAAGTTACCATTTAGCGG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000040566 1 1 5 107 2 258803599 258805537 AACATTAAGTCTTGGGTGCT 58 258803511 258803529 ATAAGCCATGACAACGGTC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000065402 3 1 2 83 5 14287922 14297696 TCCAGGACCTTAGAATCTTGAC 59 14287860 14287878 CTCCAACATCATGAGCAGC 59 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 2 2 2 82 4 68640021 68640509 GCATACCAAATGGGTGACG 59 68640555 68640573 TAAGCCACATCTCTGAGGC 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 2 2 6 80 12 41258883 41302466 CTGGTACCAACTGTGTAAGGA 60 41258823 41258841 CAGGCATAGATCGTGAGCA 60 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675 3 1 2 80 6 147104405 147110369 GTAGTAGAAGCCTACAAGAAACTC 59 147104348 147104367 GATGTTGAAATGGACACCGT 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000084769 3 1 2 88 9 82375763 82375786 GAATAGATGGACAGGACATTTCAC 60 82375132 82375151 TCGTTGAAGGGACAGTGTC 60 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 2 2 2 80 7 70527907 70529226 AGATTAAGCTGCCTGTGGA 59 70527845 70527866 ACTTGATCTTGCTGATGTAGAG 58 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 3 2 2 82 4 123619398 123619416 TATGCTGTGCAAATCCTGC 59 123619461 123620506 TCCTGCTCATCTGAGTTGTC 60 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 3 2 2 80 17 12622987 12623005 AGTGATGTCTGGAGCTTCG 60 12621830 12622943 GCTCCCTTTCATCCCTCTG 60 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903 2 1 3 80 5 136051600 136051619 CGGTGAACTTGGAGAAATCC 59 136049265 136051559 CGTCAATGTCAATCTCTTTGC 58 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552 3 1 2 81 8 117514690 117524675 AACCTGGATCAGGAACAGC 60 117524720 117524738 GGTCAATGACATGCTCGTC 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000015067 3 1 2 80 2 140322593 140324476 AAGAAGTCCCGAGTTTATCCA 59 140322533 140322552 GACTCCTCTGTTGACACCTC 60 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000040187 1 1 2 80 2 136994071 136994092 ACCTTGTCTTCACTATCTCCTC 59 136994133 136994165 TAGGTGGGATGGGTAGGAG 60 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 2 5 5 124 11 27868023 27876205 AGATTGGGATTTGGAACTCC 58 27865915 27867936 GGGCTCTTCCAGAATAGTG 57 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000091652 3 1 4 83 14 80054838 80056442 CACGCGAGAGTATAAGATTTATCC 59 80054778 80054796 CGGTCTACATCTTTGGGCA 60 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000070958 2 1 2 87 13 84065447 84067599 AGCTCTATAACCAGAGGAGG 58 84068340 84068358 ATCTCACTGTAGGCCTCTG 58 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151 1 1 2 80 8 91384945 91387822 GGCTGATAAAGAGAAGTGTACC 59 91387860 91387881 TTAGGAACTGATAATGGTGGTG 58 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218 3 1 2 80 10 91269641 91272773 ACAACTTCAAGGAGGTGTG 58 91272815 91272835 CAATGTTGCTGTCTTCATTCC 58 NA Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342 3 1 2 117 7 11947773 11947795 CCTGTATACAAATGAGTACGTGG 59 11947519 11947615 CTGAGGGACACCTTCTGTG 60 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000065171 1 1 2 80 9 104864046 104868805 AGTAACAGATGAAGAGTTGTGC 59 104863987 104864008 GTTGATTTGTGCGGTATTACAG 58 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000065171 2 1 2 80 9 104864052 104868810 GGCACAGTAACAGATGAAGAG 59 104863992 104864012 TTTGTGCGGTATTACAGTTCG 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 3 3 3 82 19 15213420 15213438 ACAGGGCCATTTCTGAGAG 59 15213482 15215141 AGCAATCAGATTAGCAATGGG 59 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 2 2 2 81 12 42486592 42488683 CCTATCAGAATGACAAGATAACCC 59 42486534 42486552 CTGCCATTGCCAGTATCTC 58 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 2 2 3 80 1 82898409 82898428 AGTCCAACCTTGTTCTATGC 58 82898069 82898366 AGATACTGAGGCTACCTCC 57 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756 1 2 3 80 3 14643862 14643881 AAATAATCCTGTCGGTGCTG 58 14637200 14643820 CTTGATAACTGTGGGTCCTG 58 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528 3 1 2 98 1 65660759 65661308 GAGTGAATCAGGCCATCTG 58 65660679 65660698 TAATGAGCTCATCTGCAAGG 58 NA Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 3 2 2 80 14 3236054 3245978 AAGATGACAACCAAACTGGA 57 3246020 3246039 TAAGTCCTACATGAAGTGGC 57 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000061921 3 1 2 86 6 7017279 7031683 TCTAGATGCCTCCAAGATTCG 60 7031730 7031749 ACAGTTTCTAGTTGCAGGCT 60 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000057036 2 1 3 100 12 46353453 46353471 CAGCTTTCCTGACAAGCAG 59 46352197 46353391 CAAGTAATTTAGCATCGGCCT 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 1 3 3 80 7 2470085 2470104 GGCTGTTTCCAACATTCAGG 60 2470147 2470295 CCCGTTTCATCAACCTCCT 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599 1 1 2 80 2 24210838 24224804 GATAACATACACAGGTTTGCAG 58 24224845 24224863 GGAACCTTCCTTCAGTTCC 58 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476 2 1 2 89 4 145715553 145715571 AGAGATAGACCACGCAGAG 58 145714267 145715502 ACTACTTCAATCTGTGTCTGG 58 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 2 2 2 98 20 5115204 5115777 GAGAACCAGAACCGATCAC 58 5115839 5115857 CAGGTGAGCAGTAGATGTG 58 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000087439 1 1 2 80 3 46812777 46812796 CTCCTGTATCTGCCTACCAG 59 46809622 46810529 AAGGACTCTGCACCTTGAG 59 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678 2 1 2 143 7 143784233 143784617 TACACGTGGATGCTGACTC 60 143783800 143783818 CTTGCTGGAAGAGGTAGCT 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000000787 2 1 3 80 20 21874721 21874739 CATCAAACAGGAAATGGCC 57 21874783 21878575 TCTGATGAGACCTCAGACG 58 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 2 2 2 80 8 76870386 76874413 CTTCCCTTAATGGTCCCTG 57 76870324 76870342 TCTGAATGATGTTCCGTCC 57 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 3 2 2 80 8 76865996 76868094 AAGATGTGAGACGGCTTCC 60 76865934 76865955 GGCACTTCTTATTGGTGATCAG 60 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 3 2 2 80 1 279649156 279649177 ATGGAAGAAGATATCAAGCTGG 58 279649217 279658850 TTCCATTGACTTCATCTCCC 57 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126 1 1 2 82 20 5121521 5121724 CCTCCTCTACAACCGATCG 59 5121457 5121476 CTTTGAAGTCCAAGCAGGAC 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 1 3 3 112 4 149972333 149972351 TACAGAAGGCATCTGTGGT 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000085435 3 1 2 81 16 54112013 54112032 AAGCTCCTCAGAATGACAGG 60 54107338 54111969 GGATCTCTGGCCTTTGAGG 60 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 3 4 4 83 10 65307779 65307798 GACACCAAGATTGCTGACTC 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 3 2 2 80 13 80764922 80765888 ATTCAGTTTCAGACAACCGTC 59 80764862 80764880 CTGAACATACACGTCCCAC 58 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 3 3 3 82 8 77272811 77276552 AGACGCAGCAAAGAATGAC 59 77272747 77272767 TTTCACGAAGACTTTCTCCTG 58 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 1 3 3 80 3 22884843 22887244 ACTACTCTGAGAAGCTTCGG 59 22887285 22887305 GCACATACTCAATGTCAGGTC 59 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750 3 1 2 80 11 32048107 32048126 AAGGCTACATCCATGAACTC 57 32048166 32049782 GTTTCTGAAAGATCTCTGTGAC 57 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 3 2 2 138 1 69615629 69618792 GGGCTGTGTAACCATTGAG 59 69618892 69626055 ATACCGATAAACCAGTGAGGA 58 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 2 2 2 82 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493106 14493128 CAAAGATGTGTTGAGATGGATCC 60 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 1 2 2 120 3 117382699 117382717 ATGACATGAAATGGCAGGC 59 117379907 117380026 TTGAATTCAACCACGCCAC 59 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507 2 2 3 88 6 10378544 10378562 CAAACTGAAGGAGGAGCCA 60 10378614 10379611 AGTTCTGGCTTCCGAAGTC 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000080507 1 1 3 80 6 10378450 10378471 AATCCTGTTCAAGCCACCT 59 10378514 10378533 AGTTGCTCTTCTCGGATAGG 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067349 1 1 6 97 5 150116059 150122081 CAAGCTCAGGATTTAGACAAGAG 59 150115984 150116002 GGTTCGGGTACTGATTCCA 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493 2 1 6 80 5 150162918 150163357 CCTGGTACCTTCATCCAGC 60 150162856 150162875 ACTCCTCAATCCCTTCTCCT 60 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000051402 3 1 2 80 1 129769064 129769084 CTGCTACTCTATGTTTGCCTG 59 129767270 129769023 AACAACTGAGCATGTGACTC 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 1 2 3 80 20 4534115 4534220 CCCTTTCCGTAGGTCAGAC 60 4534260 4534282 ATGTCCTCTCCATACACATACAG 60 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 2 2 3 88 14 81944454 81944473 AGCTGTCTACATCAGAAGCC 60 81948658 81950490 CTTGTGAACCTGTCTATATTCCAG 59 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 1 1 1 78 10 17375076 17375094 TGATCATGAACTGGCCCAG 60 17389910 17389928 ATCGTAGCACTCTGTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690 1 1 2 106 7 55151699 55151717 ACGCTCTAGTACCAGAGAC 58 55151784 55157086 TGCAGTTATCTTTCCTGATTCC 59 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 2 3 3 100 10 109900902 109901401 AACTGAAAGTGGTCGGGAG 60 109901464 109901483 GATTTCTGCCTCTTTGAGCC 59 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 2 2 2 80 9 93096944 93097971 AAACACCAGACGCTAGTCC 60 93098014 93098033 ACTCGATAGCCATTTCACCA 59 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600 2 1 2 84 8 94007926 94007946 CTGCTGTTGATACTATCGAGG 58 93950379 94007880 AATGAGAGCACCAAAGCTG 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932 3 2 3 81 8 128225405 128228778 GTCATTTCAGGCCTGAAGAC 59 128225343 128225361 AGACAGTGAGGACCATCAC 59 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 3 2 2 80 2 87004039 87004058 TAACATTCCTGGAGCAAGGA 59 87004101 87009831 TGAGAGCTATTCCTGGGTG 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343 3 1 3 141 12 47228684 47228702 AGACCAACAAGAACAGGGT 59 47228804 47243804 ATAAATAATAAGCGGCAGAGGC 59 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 3 2 2 82 1 89353348 89354508 CGTCATGTATGCACCTTGG 59 89353284 89353302 TGGAACACAGGATGGAGAC 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 2 2 3 83 11 36749240 36749258 TGTGGCAGAGATGAAGGAC 59 36749305 36756784 CCAATACTGTCCGGTGGAG 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000068592 1 1 2 109 3 148714392 148714410 TCCACTGCTCTGAATGTGG 60 148712374 148714319 CCAATTGCAGACCTTGCAG 60 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000060832 2 1 2 99 20 5133559 5133660 GTCTCTGGAGCTCTACAGG 59 5133723 5133741 CAAGAACAGGCTGCATGAG 59 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000080755 2 1 2 84 1 67848150 67848169 GCTTACAGGACTGAATTGGA 58 67832563 67848105 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 2 3 3 80 14 6492211 6492230 CACTAGATACAGGCTTCCTG 57 6491451 6492169 GTAGCAAAGCCCTAAATCCA 58 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401 3 1 2 81 7 59065905 59065923 CTGCATCTGGTCAAGACCT 59 59065966 59215417 ATATCCATTTGCAGTGTCACC 59 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 1 2 2 80 2 29614439 29614459 TGCATCCTTAATGGACAAAGC 59 29614499 29616645 GAAATGTTGTCCACAAACCGA 60 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 2 3 3 80 2 148048193 148048212 ATGGACATCCGGACAAAGAG 60 148046336 148048151 AAAGACCAAGACTCTCCCAG 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339,ENSRNOT00000066896 3 3 5 124 1 215671968 215673197 AAGAAGTCCAGGAGGAAGC 59 215678579 215679182 CTTCTTCTGGATATCATCGAAGTC 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476 1 3 4 80 3 152615421 152615748 GATCAAGACCAGGCTCTGG 60 152615790 152615810 GACAACAGCTTTGGTTACCAG 60 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 1 2 2 80 3 138536755 138542460 GGTACCAGACTGCCTTACC 60 138542504 138542522 CTTCTGATCCCACCAGACG 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000077275 1 1 2 80 19 22610068 22610089 CAGAAAGTGCATAGAAGATGTG 58 22607901 22610027 TTGTCCTGGTATACCTCGT 57 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000025443 2 1 2 122 3 22413278 22500682 GCTTTCAGATCCTGAGGTG 58 22381222 22381241 CCAACTTGGCTAACTGAGAG 58 NA Rattus norvegicus 81 Etfa ENSRNOG00000015233 ENSRNOT00000020544 2 1 1 80 8 60076864 60076882 ACTATCACTGCAGCTGGAC 60 60072491 60076821 ATCCTGTACCACCTTGTCAC 60 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 3 3 3 86 1 89557102 89557126 CGTCTCCTCTTCTTTGATAATTACG 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Baalc ENSRNOG00000004697 ENSRNOT00000006411 2 1 1 63 7 77820773 77820791 GAAGCAGAATGGCCTTTGG 60 77834816 77834834 TTCTCTTGCAGACATTCGC 59 NA DesignNoJunction Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095 3 1 2 90 19 21554211 21554229 GAAATTCCAGAGGACCCGT 59 21554283 21554580 GTGAATGAGAACTGTCGGC 59 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813 3 1 3 80 14 83345999 83346525 CTTTGACCAAGACCTGCAC 59 83346568 83346587 TTGGCATGTGTTACAAAGCT 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 1 2 2 88 20 47253681 47253702 TTCAAGCTGAAGGAATCTACTG 58 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 1 2 2 80 3 43113697 43114553 CTATTCCAGGTTCCAGGCA 59 43113635 43113654 AGGAGATCGTAGAACTGCTG 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 1 2 6 80 10 89217313 89217332 ATAGCTTCACTCTGATCGGG 59 89217147 89217270 GGTCTCCAGTGACCTTGAG 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 1 2 2 80 10 90207278 90208567 TTCCAGACTGAGATTGTTACC 58 90208609 90208627 AGATTTCATGGTGAGCCAG 58 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000023610 2 1 2 81 1 211561748 211570030 AGGAATACGATGGCATCGA 59 211570075 211570093 CTTTCCCAAATGGACTCGC 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 3 2 3 160 14 81051932 81051953 TGTTAGAAAGACCAAAGAGGAC 58 81014698 81037651 CAGACACAGTTGCAGACTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445 2 1 3 80 12 43501139 43503323 CTGTGGATTTCAAGGTGCC 59 43501077 43501096 TTCATCCTTGTCATAGGGCC 60 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 1 2 2 81 3 147109080 147109100 AGCAGAAGGAGGTTTGTATCC 60 147106444 147109037 ATCTCTGTGTCCCGATCCT 60 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 1 2 2 80 2 137325786 137325806 CAAATTATACGACCAGTGGCT 59 137325339 137325746 TCTAGAAGACTCTTCACTGCT 58 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668 3 1 2 80 1 70253692 70254518 GTTAATGAAGCCTTACCTTCACC 60 70254558 70254576 TGTGGTTGGAATTCTTCGC 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754 3 1 5 84 10 89177764 89179530 GGAGGAAGAGTTCCATGGG 60 89179576 89179596 GATAATCTCAGCCTTGTGCTC 59 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 3 2 2 80 5 76414450 76415252 AATCCAGAATGATCAGGTGGA 59 76415292 76415312 AGCATTCTGAAATTGGCTCAC 60 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 3 2 2 81 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628546 7671883 CAAGGGTAATTCCTATGCTCTG 59 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111 2 1 2 80 3 168031733 168033399 CAGACACTTACAAGGTGACG 59 168031672 168031691 GTTGAATCACACGAGTGGAC 59 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111 3 1 2 80 3 168031733 168033398 AGACACTTACAAGGTGACG 57 168031671 168031689 TGTTGAATCACACGAGTGG 58 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000088331 3 1 2 188 10 89166948 89167809 CTCGCTGTCTCAACCTCTC 60 89168398 89168547 CAGGTTGCTGTAATACCTGC 59 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945 2 1 2 81 5 150872778 150872798 GTGTTCTTACCTGCACTACAG 59 150872841 150880364 GTGCTTGAAGCTGGAATGG 60 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 1 2 2 80 1 255063271 255063290 GACCCACAAATCGCTATCTG 59 255063331 255067143 CTTCATGAGACCCTTTACCAC 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 1 4 5 80 8 99640718 99640737 CGAGAAGTCATGACTCTGGA 59 99640777 99640898 CTGGATTTCTATCTCCTGGAGG 60 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000036502 2 1 2 92 X 26357789 26357945 GAGTAAGACAAGAGATGAAACACC 60 26357716 26357737 CACAGAATGAACATGTCCAGAC 60 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 2 2 2 80 3 157009812 157013428 AAGTTAAGCCTGTGGAACG 58 157009750 157009771 GCCGGTTACTGTTCTTATACTC 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365 2 2 3 90 8 87297899 87315794 CTATCTCAGAGCTGGACAGAC 60 87297829 87297847 CTGTGACACTTCTCAGCCA 60 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365 3 2 3 90 8 87297901 87315795 CCTATCTCAGAGCTGGACAG 59 87297830 87297848 TGTGACACTTCTCAGCCAG 60 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000065342 1 1 2 80 1 193200974 193200992 CCACGATGCCAGAATACCT 60 193201033 193202361 GAGTGGATGGGTAGATAGAAGC 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000082355,ENSRNOT00000013991 1 2 7 80 16 64025228 64036326 TCAAGATACTTGTGCAAGTGC 59 64036367 64036386 TTGGGTTTGGACTTTCATGG 59 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 2 2 2 80 8 119488865 119489377 ATTGATGAGGAAGGGAACCTG 60 119488805 119488823 GAAGATAGGCAGTCCCTCC 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025939 1 1 3 80 2 210780303 210780323 ATATTTGAACCCAAGTGCCTG 59 210778460 210780263 AGATATCTTCTTCAGGCCCTC 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000087615,ENSRNOT00000080174 1 3 5 66 20 4806965 4806983 TTCCCAGCCATTGCTATCC 60 4806815 4806834 TGAACTGCTGATACCGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000084311 2 1 2 127 10 89699277 89699485 TTCTGCAGCCAGAAATCTC 58 89698962 89698981 TGACTGAGATCCTGGAAGAG 58 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980 3 1 2 80 14 83897143 83900085 AATGCAAGAGATGCTGATGC 59 83907870 83907890 GCAAAGCATAAATCCTCCTCG 60 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487 2 1 2 101 10 95255128 95255147 CTACAATCCCAGTGATTCCC 58 95250576 95255064 TTGTTATGAGACCTGCTGG 57 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001552 1 1 3 80 12 47199191 47203596 ACAGACAACCTGATAGATCGT 59 47204372 47204392 CTTTGTCCTTGTCAAATTCCC 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000083487 1 1 2 80 9 53706326 53706347 GCTCTACCAAGTTAAAGAGCTG 59 53706387 53708456 CCCATGTGCAACTGTAAAGG 60 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515 2 1 3 81 8 96132534 96132552 AGACATTGCTTGATGCTGG 59 96131774 96132489 CTATGTGCAACTAGCCCTG 58 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 1 3 3 80 8 22532320 22532339 AATACGGGATGTGGAGAAGG 59 22532381 22534332 TTGTAGACGTTCCTCTGCTC 60 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 1 2 2 80 8 61779257 61779281 CCACTTTCGTTAGTTCTAAGAAGAC 60 61779318 61781090 CCACATCAAGCTCAAATCGT 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 1 3 5 84 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4418997 4419017 GCAATGAAGAGAAGGAAGACC 59 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 3 2 2 80 10 98363506 98363525 CAGAAAGCGAAGGGAAACTG 60 98360536 98363468 TCTCGAGATCCCTATAAAGATCTG 59 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000005665 2 1 2 144 10 98385243 98388604 GATTCCTTGGTTGGGACCA 60 98383453 98383477 GTAGTATAAATGCTGTGTACAGGAG 59 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 1 2 4 80 14 84286841 84286859 CCTTCAACCTGGTCAAGTC 58 84286901 84287178 GCTCTTGTTTCCAGTTACCTC 59 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383 3 1 4 86 14 84277971 84277989 GAGATCCTCCAGGATGTGC 60 84278038 84308363 TAGGTCAAAGTTCCGAGCTC 60 NA Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 1 2 2 80 1 255934276 255934294 TGTACTACCTCCGTCTGCT 60 255932528 255934232 GGAGGGTCACATCATCGAG 60 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 3 2 2 80 2 225601393 225602437 TATAAGTCCAGGAGACTTTCATCG 60 225602471 225602494 TCATCTAGATCATCAGCAGAAGAC 60 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225 1 1 2 80 2 211785767 211785785 GCAGAGTCAAGACTTCAGC 59 211772189 211785720 AACTTGACCTTGAACACAGC 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951 2 1 4 80 2 53157883 53159888 AGCATGTGAAGAAGATTTCCG 59 53157823 53157844 ACAAATAGCATCACTGCTACTC 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 1 3 3 80 20 48563763 48564813 TTGTACAGTGGGACATTCG 58 48564855 48564875 CAAAGACAATCGTGTTGACAG 58 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 3 2 2 80 5 154919398 154919419 CATCAGTTAGACTTCAACGTCC 59 154918691 154919360 TTCTTGTAGCTGAATGACAACC 59 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 2 1 2 197 20 49325108 49330220 TGGAACATCACATTTCAAGC 57 49332435 49352987 GTCAAATCTGTCATTCTGCAG 58 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 2 3 3 84 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155170 155188 CAAAGACAGCCAAAGGTCC 59 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 3 2 2 80 3 148354056 148354075 AGGATGAAACTCTGGAGAGG 59 148354114 148357121 TACTCTTTACAGTCTTCTCCCTG 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128 3 1 2 80 16 69067600 69067618 AAGTGTGAACCGAAACCAC 59 69067660 69068385 TGGAGAAACTTCCAGTCTAGG 59 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000079020 3 1 2 80 3 52660196 52660215 GCTTTGTACATGCTGTCTCC 59 52659849 52660156 TAGCATGCTGAATAATGAGTGC 59 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126 2 1 2 80 3 52660197 52660216 TGCTTTGTACATGCTGTCTC 59 52659850 52660155 AGCATGCTGAATAAGGAGTG 58 NA Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 2 2 2 83 16 80915387 80915407 ACATTAGGAGAATTTGGCGTC 59 80915452 81054932 TCTCCACACCTTTCTCAGC 59 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286 2 1 2 94 3 172175529 172175547 AAGCATTTGAACAGACCCA 58 172175605 172176357 CACCTATGGAAGAGCTGTG 58 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769 1 1 2 80 3 66722431 66773300 CTATGAAAGGAGTTAAGCACCTG 59 66773340 66773358 CTTCTCTTTCACTTGCGCT 59 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 1 2 2 80 5 150514397 150514416 TCTACAGGATGTTGTGCAGG 60 150514196 150514354 CCAAAGGAGTAGACCTGGC 60 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 2 2 2 81 5 150514397 150514416 TCTACAGGATGTTGTGCAGG 60 150514195 150514353 GCCAAAGGAGTAGACCTGG 60 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000017106 2 1 3 80 16 74800732 74800750 CTGGGAGAGGAACAAGGAC 59 74801729 74802173 GTGGGTTACCTGATTCACCA 60 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000088458 1 1 2 80 16 71147796 71147816 TTGCAATGACTGTAAAGCTGG 60 71144483 71147755 GGCCACCATCTGTAATTTCC 59 NA Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 3 2 2 80 3 176915014 176925763 CCGAGACTCAAATGTGGAC 58 176914952 176914970 TGAGCATAGAGCTCTGCTC 59 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026 2 1 2 82 3 176756483 176756501 TTCATCCGGACACATCCAG 60 176754175 176756441 GGCAGTGATCACATTTAGTACTG 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000091265 3 1 2 152 3 80855393 80875680 CAGACACAGAAAGCCATCAC 59 80854981 80854999 CTCAAACCAGATGTGCTCC 59 NA Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000068416 2 1 2 92 16 82217489 82220075 CCTAATGGATCTGCTAAAGTCTC 59 82220127 82224266 GAACACAGTGGCAATTGGT 59 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000079394 1 1 2 80 3 79980381 79980399 TCTGTCATCGGTGTGAGTC 59 79980055 79980337 ACTGTTACTCACCACGGTG 60 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000079394 3 1 2 82 3 79980381 79980399 TCTGTCATCGGTGTGAGTC 59 79980053 79980335 GAACTGTTACTCACCACGG 58 NA Rattus norvegicus 81 AY172581.9 ENSRNOG00000030478 ENSRNOT00000040038 2 1 1 60 MT 462 483 ATAATGCACGATAGCTAAGACC 58 502 522 TTTAGGGCTAAGCATAGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057518 ENSRNOT00000080644 1 1 1 60 5 122109291 122109309 TCATGGTGGTGATCTCAGG 59 122109333 122109351 AGGGTTTGCACATTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059772 ENSRNOT00000078697 1 1 1 63 5 72221596 72221614 CATGTGCATCAGAAGGTGG 59 72221551 72221569 CACAGGTCAGAACACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139445.1 ENSRNOG00000059641 ENSRNOT00000091530 1 1 1 60 X 105651520 105651538 CTGCTACCTTACCAACCGT 59 105651560 105651580 ATCACTGAATTCCTCAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058747 ENSRNOT00000088625 2 1 1 60 2 11402470 11402493 GAACGATACAGAGATTAGTATGGC 59 11402512 11402530 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561558 ENSRNOG00000053609 ENSRNOT00000086804 3 1 1 65 X 158261527 158261545 AGAAGTATGAAGCCCTGGC 60 158261480 158261501 CGGAATAGTTTCTCATTTCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055198 ENSRNOT00000087276 3 1 1 86 2 44247236 44247254 CTGCTCACTTTGACAGCAC 60 44247303 44247322 AATTTGCCTGTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000055674 ENSRNOT00000078526 1 1 1 60 2 185246842 185246863 CTCAATTGTTGTGGACATTGTC 59 185246884 185246902 AAGGTACCAGGCAGAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058614 ENSRNOT00000087708 2 1 1 60 8 111512140 111512160 GGAGACTATGTCTATGCTCCA 59 111512100 111512120 GTTAGGCTACTAACCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044838.1 ENSRNOG00000000650 ENSRNOT00000000807 3 1 1 61 20 23147260 23147278 AGGAGATGCGAATGGAGAC 59 23147300 23147321 GTTGTTGGAGAATTTCTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000054318 ENSRNOT00000083725 1 1 1 60 2 210843415 210843435 CCAACAATCCAATGATTCTGC 58 210843455 210843475 AATGGACTGGTTTCAAAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060458 ENSRNOT00000087565 3 1 1 66 5 171157605 171157625 CAGGTATTACTGCTGTGTCAC 59 171157653 171157671 AGTGCAAACATGGCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.1 ENSRNOG00000051378 ENSRNOT00000088119 3 1 1 61 2 225052667 225052685 ATGGCTCGGAGGTTAAGAG 59 225052624 225052644 GTCCTCGAAATCAAACTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000058533 ENSRNOT00000083798 3 1 1 60 5 140989108 140989126 ACTCAAATCTTTCCCAGGC 58 140989150 140989168 ACTATAGCACTGCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056936 ENSRNOT00000082328 1 1 1 60 2 221706142 221706160 TTCATGCTAGGTCGTTCGT 59 221706100 221706121 GAAGACTGGTCCTACTCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011117.1 ENSRNOG00000047819 ENSRNOT00000073520 2 1 1 60 2 158455571 158455591 TCCTCTTCTTCATCTTCTCCT 58 158455531 158455549 ATCAACACTCCACCAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058231 ENSRNOT00000079482 1 1 1 60 8 57323396 57323417 GAATGGTACAGAGAAGGTTAGC 59 57323437 57323456 GCTTTAGGGATCTGTATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054228 ENSRNOT00000081832 2 1 1 61 11 83659031 83659054 GAATGATACAGAGATTAGCATGCC 60 83659071 83659092 GAATGCTTCATGAATTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054228 ENSRNOT00000081832 3 1 1 62 11 83659031 83659054 GAATGATACAGAGATTAGCATGCC 60 83659073 83659093 GGAATGCTTCATGAATTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000060264 ENSRNOT00000091566 3 1 1 63 11 86761003 86761021 AAATGGCTCCTGCCTACAG 60 86760958 86760979 CATGTATGGAGTCATTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058307 ENSRNOT00000087587 1 1 1 60 2 223128686 223128708 CAGTACAGAGAATTATCATGGCC 59 223128726 223128746 TGGAAGCTTCATGAATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061771 ENSRNOT00000086971 2 1 1 61 5 34074842 34074863 GCTAATAGAAATGTTTCCGTGG 58 34074802 34074820 CAGGACTGCTGGTATCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061362 ENSRNOT00000089659 1 1 1 60 2 201142204 201142222 GGAGACTTGGACAGCTCAG 60 201142162 201142181 TGTATAGGAAAGCTGGGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060236 ENSRNOT00000084672 3 1 1 63 5 21556663 21556683 ATCCGAGGAGTGATTATTGCT 59 21556708 21556726 ACAGGGTTTGGTGTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051434 ENSRNOT00000080715 1 1 1 70 11 43947906 43947924 TATGGCTGCTGTTTCACTC 58 43947955 43947976 GAATACTCATTGTAGACACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044300 ENSRNOT00000069567 3 1 1 60 16 60060618 60060639 CTGAACATACATGATCTCACAC 57 60060579 60060599 AGAACTAACCAAGCCTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033759.1 ENSRNOG00000044762 ENSRNOT00000070029 1 1 1 60 11 38902809 38902831 CTAATAGAGAAACACTGTCTCGG 59 38902850 38902869 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000056305 ENSRNOT00000088072 1 1 1 60 8 64311702 64311720 GACAAAGGCAGGTTGACAG 59 64311744 64311762 ACAATGAGTTCTGGGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058928 ENSRNOT00000087365 3 1 1 60 16 49365785 49365804 CTCAAATGTGATTCACAGCG 58 49365744 49365765 GTGGCTCATGATACTTTATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000060595 ENSRNOT00000089915 1 1 1 62 16 6742866 6742887 ACTTAGTATGCCATACTGTGTC 58 6742825 6742846 CTTTATGGTCATATCCACAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000060595 ENSRNOT00000089915 3 1 1 63 16 6742866 6742888 CACTTAGTATGCCATACTGTGTC 59 6742825 6742846 CTTTATGGTCATATCCACAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059115 ENSRNOT00000082466 1 1 1 60 X 95958697 95958715 ACTTATCCATTGCACTCCG 58 95958655 95958673 CGAGTTTCCAACATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045493 ENSRNOT00000070760 2 1 1 61 16 25578392 25578410 CTACGGCCATACCACTCTG 60 25578349 25578369 TGCTGTTTGATTTCTTCCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057320 ENSRNOT00000092062 2 1 1 60 1 55623895 55623914 AGTTGCAGATTGAACTCCTG 58 55623854 55623873 GCCAATCAAGTGCAGTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056684 ENSRNOT00000092171 3 1 1 60 16 46532723 46532743 TACTTCAGAAGCATGTAGCCT 59 46532763 46532783 TGTAGGGACCTTGCTAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058511 ENSRNOT00000085656 1 1 1 60 16 53889757 53889776 AAACTTTCCCAATACCCAGC 59 53889716 53889737 GTCAAACACTGACAATGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059126 ENSRNOT00000082707 1 1 1 60 2 93809111 93809129 GTGCTTTCTTCAGCAACAC 58 93809152 93809171 GGCCATGTTACTGTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053833 ENSRNOT00000088971 3 1 1 66 1 194939845 194939865 TCTCAGTCAAACATTCCTTGG 58 194939799 194939817 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036509.1 ENSRNOG00000051479 ENSRNOT00000090580 3 1 1 69 12 45511330 45511350 CTGTGGGACATTTCAAAGACC 60 45511279 45511299 CATTCCAGCCATCTTGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 SNORA26 ENSRNOG00000059253 ENSRNOT00000091852 1 1 1 83 X 135651495 135651515 GGCTCTTTAAGAGGCTAACAC 59 135651560 135651578 AGGAACCAAAGAGGAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072054.2 ENSRNOG00000056787 ENSRNOT00000079734 2 1 1 83 1 260061052 260065782 AAACATGAGGACCATTGTCTC 58 260065827 260065845 GAAAGGGAAGCTGATGGAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060084 ENSRNOT00000091563 3 1 1 60 4 56512040 56512058 CAATCCCGTCAGTAGGTGG 60 56512079 56512100 ACTCATAGGTGAGAACAGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045293 ENSRNOT00000070560 3 1 1 60 6 114013170 114013188 GGTCAGGCATGGTTAACAC 59 114013128 114013148 GCATACAGTCAAAGTTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068066.1 ENSRNOG00000049222 ENSRNOT00000071274 1 1 1 60 9 80685791 80685810 AATGCCTTCATGAGATCCAG 58 80685833 80685851 CTCTTCCACCCTTGATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056437 ENSRNOT00000088652 3 1 1 62 6 133832359 133832383 GTGATGATAGTTACCAAGGTATGAG 59 133832403 133832421 GACTTCTGAGCTTCAAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047373 ENSRNOT00000070769 1 1 1 64 9 32722669 32722687 ATACCATCCTGAGTGTGCC 59 32722715 32722733 CTAACCAGAGCTGACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047373 ENSRNOT00000070769 2 1 1 65 9 32722668 32722686 CATACCATCCTGAGTGTGC 58 32722715 32722733 CTAACCAGAGCTGACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD11 ENSRNOG00000053003 ENSRNOT00000080611 3 1 1 60 9 66512669 66512687 TGATTTCTGATGCCTTGCC 59 66512711 66512729 AGGTAGTGACTGAAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035148 ENSRNOT00000053271 1 1 1 60 X 32102855 32102875 TCTCACACCTGATTTCATCTG 58 32102815 32102835 CAAGAACTAAACAAGCCTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058942 ENSRNOT00000091839 2 1 1 60 X 33175815 33175837 GTGGTGTTCTTATATCAGTCAGG 59 33175855 33175875 CAAGCTAGGATGAACAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051855 ENSRNOT00000087658 2 1 1 60 2 28652303 28652322 AGGTCATTTCAAAGAGGGCT 59 28652262 28652282 TTTGGTCACAGAGTTAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060556 ENSRNOT00000078546 3 1 1 63 17 78955055 78955073 CCTGAGGTGCGATTATTGC 59 78955100 78955118 TATGGCAAGTCCTCATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054171 ENSRNOT00000080225 1 1 1 75 9 3389411 3389430 ACCATGATCACTAAGGTGGT 59 3389355 3389373 GAAATTCCAGGGTCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000057513 ENSRNOT00000086739 1 1 1 60 6 66235354 66235372 GGCTTCAACTTTGCGTCTC 60 66235393 66235414 TCAGTCATCATCTACAGGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056635 ENSRNOT00000079950 2 1 1 60 X 14540542 14540560 TTGTGCTGATTCCTGACTC 58 14540583 14540602 AATGCAGTTGACTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059367 ENSRNOT00000090976 3 1 1 72 2 198524228 198524246 AGGCTTATCCACTGCACTC 60 198524174 198524193 ATTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052951 ENSRNOT00000087155 1 1 1 60 X 9504861 9504882 CGTCAGTTACAGATTAAACTCC 57 9504899 9504921 GTCAAGTACAGTAGTAAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056326 ENSRNOT00000087675 2 1 1 79 X 109174665 109174683 ATTCTCACTTTGGCAGCAC 59 109174604 109174623 GCATGTGATCTTTCTCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053280 ENSRNOT00000085254 3 1 1 60 9 35908659 35908677 TTGGCAAATGGCAAAGAGG 59 35908695 35908719 GATGTTCATTAGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054285 ENSRNOT00000081186 2 1 1 60 9 64150435 64150454 TGAGACCTATTCAGTGCACC 60 64150474 64150495 AGTTTCCCACATTTGTGAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.3 ENSRNOG00000053408 ENSRNOT00000080615 3 1 1 64 17 44674571 44674592 GATGGACTAGAAATCCATTGGG 59 44674528 44674546 GATCAGTTCGTAGTCGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056924 ENSRNOT00000082189 2 1 1 60 X 40434023 40434042 GTCACATGTGCATCATCAGG 59 40433982 40434001 GTCAGAACACTGAGCATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073392.1 ENSRNOG00000051478 ENSRNOT00000085294 2 1 1 112 8 46757402 46757420 GGTACAAACCAAGGCAGAG 59 46757098 46757116 CCCGTCATTTCTACTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058056 ENSRNOT00000085208 3 1 1 60 15 36421657 36421677 CACATGTACATCAGTAGGTGG 58 36421699 36421717 GTCAGAACACTGAGTGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058605 ENSRNOT00000089106 2 1 1 60 3 103074714 103074733 AGATGTGGTTGCTACATGTG 58 103074753 103074774 TAGACATACTCTCCTTTCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058181 ENSRNOT00000088150 1 1 1 60 15 84876536 84876554 GTGCATCAGTAGGTGACAG 58 84876575 84876596 GTTCATAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056385 ENSRNOT00000086898 1 1 1 60 3 154846056 154846076 TCATTGATACTGCAGGGAGAG 59 154846016 154846034 CAGGAGACCTTCCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056016 ENSRNOT00000086857 2 1 1 60 3 123417343 123417362 CTTGAGATCTCATGATCGGG 58 123417382 123417403 CTAGACTACAATGGATGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063802.1 ENSRNOG00000059553 ENSRNOT00000078347 1 1 1 60 6 49401769 49401787 CCTTGTTGGAGGAAGTGTG 58 49401727 49401748 CCAGGCTTAGATTTCTGAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056072 ENSRNOT00000082479 1 1 1 67 12 11622121 11622139 AATGTGGAGTTCGAAGCTG 58 11622072 11622090 CAACCCATCTGAGCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053049 ENSRNOT00000087209 3 1 1 60 2 67847673 67847691 ACACTGCTCCATGTATGTC 57 67847712 67847733 AGAAAGTTAGTCCTCTTACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.4 ENSRNOG00000057799 ENSRNOT00000077370 1 1 1 72 17 43777486 43777504 TTGTTGAGCTCCTCATCGT 59 43777540 43777558 GAGACAACAAGAAGACGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062512.1 ENSRNOG00000053339 ENSRNOT00000086465 1 1 1 80 4 180426505 180426525 CTGGAGTCCACTATGAGTCTG 59 180425873 180426466 TTTCCTTTGTTCTGTCATCTGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054044 ENSRNOT00000087042 1 1 1 60 2 29930746 29930768 GAGGAAGATGCTATGTCTAAGCT 60 29930708 29930730 GTTAGGCTACATTCAGATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058703 ENSRNOT00000078465 1 1 1 60 X 14960964 14960982 TGCAGTGCTTTAAGATGCT 58 14961006 14961024 CCTGTCTGGGTTTCATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055069 ENSRNOT00000088754 2 1 1 60 X 110858507 110858527 AGGTTGACTCAGCTAATTTGG 58 110858467 110858488 CATGAATGGTAAGGTTGAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051738 ENSRNOT00000077769 1 1 1 60 8 65308020 65308038 GTGTCAGTAGGTGGCAGAG 60 65308058 65308080 CAGATGTTCATAGGTCAGAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059264 ENSRNOT00000087292 1 1 1 60 8 32413552 32413574 GGAACGATACAGAGAAGATTAGC 59 32413514 32413532 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044036 ENSRNOT00000069303 3 1 1 60 4 101014263 101014286 GTGCTCAATCTTATCTGATCTCAG 59 101014226 101014246 CATCTAAGTACTAACCAGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052073 ENSRNOT00000079729 3 1 1 60 9 108838815 108838833 GAGAGGATGACCTCTCCTG 58 108838854 108838875 GCTACTTGTATACCCTTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111831.2 ENSRNOG00000060905 ENSRNOT00000092218 1 1 1 88 6 8346766 8346784 CATGATTGACAGTGCCAGC 60 8346836 8353505 TCTGCTTCAGAACCTGTCG 60 Novel Rattus norvegicus 81 AABR07003056.2 ENSRNOG00000059987 ENSRNOT00000086126 3 1 1 60 1 95455655 95455673 AGAGGAGACTCTACAGGGA 58 95455697 95455715 TTACCCAAGAACAGGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048308.2 ENSRNOG00000052929 ENSRNOT00000080570 1 1 1 80 5 71786712 71786732 GTCATGTATGTTGTTGACGCT 59 71786647 71786671 CAACAGAGTAACAGCTGTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053750 ENSRNOT00000090753 3 1 1 60 9 46378085 46378103 TCACACGTGCGTTAGTAGG 60 46378122 46378145 TAGGTCAGAACACCAAGTATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062920.1 ENSRNOG00000052333 ENSRNOT00000087813 3 1 1 61 6 15190517 15190536 CAGAAGATGGAGAAGCTGAG 58 15190560 15190578 GACTTCCTCGAGCTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029172.1 ENSRNOG00000043856 ENSRNOT00000069123 1 1 1 60 10 11310939 11310957 TGTCCTGGAACTCACTCTG 59 11310980 11310999 CAGAGGTAGGTGGATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057142 ENSRNOT00000088007 2 1 1 60 4 86869166 86869187 CAATGTGTCACATGTGTATCAG 58 86869127 86869145 ACTGGGCGTAGACATATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.1 ENSRNOG00000045403 ENSRNOT00000070670 2 1 1 61 2 2478736 2478755 AATAGCTGGTTGGCATTCTG 59 2478694 2478718 CATCCTGGTATAGTTAACAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052059 ENSRNOT00000085361 2 1 1 61 10 26172404 26172422 CTGTGGGTGTGGTTTACTC 58 26172361 26172382 TATATTTGGGACAATTGCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000056619 ENSRNOT00000087738 2 1 1 60 1 231901116 231901137 AAAGGTTGCTATCTAAGGTGAC 58 231901157 231901176 GGCAGATTGCATTACCTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.1 ENSRNOG00000054410 ENSRNOT00000091642 1 1 1 60 3 102589172 102589196 AACTTGAGATCTTCCTCTTACTACC 60 102589136 102589155 TTGCCTACCACAGTCATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044438 ENSRNOT00000069705 3 1 1 60 12 52217410 52217432 GGTCTTATCTGATCTCAGAACCA 60 52217372 52217394 TATTCCCATAGAATCTCCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007092.1 ENSRNOG00000034090 ENSRNOT00000048196 1 1 1 60 1 280754166 280754190 CTAAAGTTGATTGGAGAGTATGGAC 59 280754130 280754148 GAAATTTGGCCCTCCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063314.1 ENSRNOG00000061354 ENSRNOT00000087575 2 1 1 94 6 28236836 28236855 CTGTCACATTCACACTCAGC 59 28236912 28236931 CAAGACAACGGAGCAATGG 60 Novel Rattus norvegicus 81 SNORA52 ENSRNOG00000053420 ENSRNOT00000087459 3 1 1 62 4 174612722 174612740 TGGTTATGGCTGATCAGCC 60 174612765 174612784 TTTCTAGGATGCTCTGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051374.1 ENSRNOG00000046993 ENSRNOT00000072640 1 1 1 60 3 6979877 6979897 CGAGGACTACAAGGTATACGG 60 6979837 6979857 CACCACCATGACAAATTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053912 ENSRNOT00000087807 3 1 1 63 4 76229736 76229754 TTTACAGGTGTGGTTGCTC 58 76229691 76229712 CAGACATAGACTGTCTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.1 ENSRNOG00000016444 ENSRNOT00000021996 3 1 1 60 9 49795661 49795679 AAACTTCAAGAGCAGCGAG 59 49795619 49795637 GTCAATGCCATTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000054977 ENSRNOT00000084647 1 1 1 60 9 18736069 18736088 CTGAACATGCCTGGTTTCAC 60 18736109 18736129 AGTTCTATCTAGACCCAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059249 ENSRNOT00000080571 2 1 1 60 9 15608914 15608932 GAGAAGATTAGCATGGCCT 57 15608955 15608974 AATATGGAACGCTTCACGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061820 ENSRNOT00000090296 3 1 1 61 9 105888623 105888642 CTATGTCACATGGGCATCAG 59 105888581 105888600 AGGTCAGAGGATAGACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.1 ENSRNOG00000036549 ENSRNOT00000054654 1 1 1 60 9 27678682 27678700 CCACAACCAGCATAGTCAG 58 27678724 27678742 GGCGCTCAAAGAGATACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053854 ENSRNOT00000084639 2 1 1 60 6 133820663 133820683 GACCAATGATGAGATCTGGTG 59 133820704 133820723 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054501 ENSRNOT00000083019 2 1 1 65 6 52306142 52306160 AAAGAAGCTTAGCACTCCC 58 52306095 52306113 GCATGTGGGTGTTGTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 3 1 1 81 13 51937099 51939266 CATGTTGGGCGATTCTCAG 59 51939311 51939330 GGCATATGTCCTCCTCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000057478 ENSRNOT00000082629 2 1 1 60 12 40723580 40723599 TACTTGGCAGAAGAGATCCC 59 40723539 40723559 CCATGAATAATCCTCACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053888 ENSRNOT00000090107 1 1 1 60 1 11970126 11970144 GATGAAGAACGCAGCTAGC 59 11970167 11970186 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054980 ENSRNOT00000084404 2 1 1 69 4 72327438 72327457 GCTTTGGCAGTACATATCCT 58 72327488 72327507 GTAATACTTGCAAAGGGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000061624 ENSRNOT00000090030 2 1 1 67 4 77385902 77385920 TTGGTCTGAAGGTTGTGGG 60 77385949 77385969 AGTCAAGTATGAGTGTGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061378 ENSRNOT00000090199 3 1 1 60 2 187976714 187976736 GATACAGAGAAGATTAGCATGGC 59 187976755 187976774 GAACACTTCACCAATTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0645.2 ENSRNOG00000051275 ENSRNOT00000076719 1 1 1 60 X 63538198 63538218 GTACTTTCTGAAGCTGTCGAG 59 63538158 63538176 AGCTGACTTCACTCTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000052185 ENSRNOT00000079404 2 1 1 60 10 1137022 1137044 CACTGAACAACCCTGATATTGTC 60 1137062 1137082 AGTACAAACCAAGTCTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060119 ENSRNOT00000090421 3 1 1 60 1 157987317 157987335 CACATGTGCATCTGTAGGT 58 157987275 157987295 GTCAGAACACTGAATGTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059561 ENSRNOT00000091243 3 1 1 61 8 82404944 82404965 AATGCTACAGAGATTAGCATGG 58 82404904 82404923 ATGGAAACTTCACAACTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000051644 ENSRNOT00000089858 1 1 1 60 X 74098264 74098282 GGCAGTCCTTTGTTCATCC 59 74098222 74098240 AGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059591 ENSRNOT00000079668 1 1 1 60 17 39159378 39159399 ATACAGAGAAGATTAGCATGGC 58 39159339 39159359 GGAACACTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053027 ENSRNOT00000082930 1 1 1 60 2 213451361 213451381 AATAGAGGAGGACCGAATAGC 59 213451321 213451339 TTGGGCAAATCTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059156 ENSRNOT00000084342 3 1 1 60 17 73492689 73492709 CGCACATGTATGTCAATAGGC 60 73492649 73492667 CAGAACACTGAGTGGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043654.1 ENSRNOG00000027022 ENSRNOT00000059785 1 1 1 145 19 34204646 34204664 CTCTACAAGATCGTTCGCG 59 34204517 34204535 GATGGCCATAAGAATGCGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055593 ENSRNOT00000084110 1 1 1 60 4 37910250 37910269 TGTGTCAATAGGTGGCAGAG 60 37910286 37910310 CATTTAGATGTTCATAGGTCAGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0819.1 ENSRNOG00000051227 ENSRNOT00000076005 1 1 1 86 5 78042103 78042429 ATGTGGACAAGCTCAATGG 58 78042035 78042053 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 SNORA81 ENSRNOG00000054687 ENSRNOT00000085256 2 1 1 60 12 30197046 30197069 GCAGAAACTAGGATTATGTCTTGG 60 30197083 30197106 CTGAGCTAAGAATACTCTACTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043421.1 ENSRNOG00000046533 ENSRNOT00000072378 1 1 1 60 19 28220652 28220673 TCCTGAAGAACGAATGAATGGA 60 28220784 28220805 CACATCTTCAGAGGTGTAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055288.1 ENSRNOG00000047893 ENSRNOT00000073083 2 1 1 93 7 1149784 1149803 TGGTAGAGGAACAAGGAGAG 58 1149858 1149879 GCGAGTCCAAATTCTTTGGT 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000042543 ENSRNOT00000076906 2 1 1 80 5 77432994 77433015 AGTGCAGGGAACTATATTTGGT 60 77432247 77432956 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 AABR07012312.1 ENSRNOG00000058195 ENSRNOT00000072379 3 1 1 84 2 192941522 192941540 CCTCCTAAGTGTCAAACCC 58 192941456 192941474 TACAGCAGGAAGACACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054845 ENSRNOT00000087505 1 1 1 60 1 31163823 31163843 CCCTCAGAAGTACTATGTCAC 57 31163864 31163883 GGCTTAATCTCTGTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141521.3 ENSRNOG00000055964 ENSRNOT00000089201 1 1 1 62 20 5690807 5690825 AAGACCTCCACAAACTCCT 58 5689735 5689753 GTCACAGCTGGAGATCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07055919.1 ENSRNOG00000059181 ENSRNOT00000086553 1 1 1 60 7 15856584 15856605 AAAGAAGCTCTACAGAGATGTG 58 15856353 15856568 TTTCTCTATGGAGATCAGGTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062799.2 ENSRNOG00000060463 ENSRNOT00000089272 1 1 1 105 6 9483849 9483867 GATGCTCCTATCGGCTACG 60 9483936 9491653 TCTCGTTAGGTTGCCAGTC 59 Novel Rattus norvegicus 81 RGD1564534 ENSRNOG00000032038 ENSRNOT00000043280 3 1 1 93 X 63054170 63054190 CTTTAAGTGCCCTGGATTCTG 59 63054245 63056314 TACTCCAAGGGCAAGAGAC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059490 ENSRNOT00000083534 2 1 1 62 14 30129594 30129612 TACCCTGAGTGAGGTAAGC 58 30129550 30129572 CGACTTATCAGTGAGTACAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058518 ENSRNOT00000089467 2 1 1 60 1 16389876 16389895 CCTCTGTGGGAAAGAAACTG 59 16389918 16389936 GTGTGGCTAAGAAAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055479 ENSRNOT00000085539 3 1 1 99 1 199494520 199494541 GAGACACTATGATCAGGAAGGT 59 199494442 199494461 TTGAGAATCCTGGATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052520 ENSRNOT00000080959 2 1 1 61 10 93482426 93482445 CCTTGACAAGGATGGAAAGC 59 93482384 93482402 AAACAGTTGTTGCCTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028185.1 ENSRNOG00000042036 ENSRNOT00000066719 1 1 1 60 17 59179675 59179695 GGAAGAATGCCCACATATACG 59 59179635 59179658 TGACCAGGTTATCATTGAGTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068214.1 ENSRNOG00000061442 ENSRNOT00000080956 3 1 1 85 9 91004025 91004917 GCTTTGAACATGTGTTACCA 57 91004965 91004983 ACCTTGTTCAAGACTCAGC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041999 ENSRNOT00000063752 2 1 1 60 1 141753526 141753545 TTTCCTCTAGTCTCGGAAGC 59 141753485 141753504 TTTACTCCCATCTTTGGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059152 ENSRNOT00000080302 3 1 1 60 2 178608279 178608299 GAGTGACACAAATGATGTCAG 57 178608320 178608339 GCTTGGTGAAGATTTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068018.1 ENSRNOG00000061280 ENSRNOT00000083389 3 1 1 80 9 77680043 77680066 AGATTTCACCTCACATGCGA 60 77679982 77680002 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07006160.1 ENSRNOG00000017884 ENSRNOT00000024056 1 1 1 60 1 223549222 223549241 GACGGACAGTTAAAGTCCCT 60 223549181 223549199 TGTTATCCAAGCGTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061732 ENSRNOT00000081698 2 1 1 60 2 198515671 198515689 CAGATTCCCGTAACTTCCG 58 198515710 198515731 GCTCCAAATAATACAAGTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076124 3 1 2 116 4 32336626 32379302 GGATATTGCTGCTGAGAACC 59 32336529 32336548 TTCTTGAAGTTGGTGTCCAG 58 Novel Rattus norvegicus 81 AABR07029470.2 ENSRNOG00000058024 ENSRNOT00000082896 3 1 1 60 10 29806970 29806989 AACAAGCGAAAGAACCAGAG 59 29807011 29807030 ACTGTTCAATTTCAGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060318 ENSRNOT00000084473 3 1 1 60 2 224561418 224561440 GATACAGAGAAGATTAGCATGGC 59 224561460 224561478 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055359 ENSRNOT00000080014 1 1 1 60 2 190324643 190324661 GGCAGTCCTTTGTTCATCC 59 190324685 190324703 AGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102548479 ENSRNOG00000028202 ENSRNOT00000029433 3 1 1 90 X 58227869 58227887 AACTTCCAGTCACCAGAGG 59 58227939 58228130 CTCCGTAATCTGAAAGAACGT 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041913 ENSRNOT00000063666 2 1 1 65 14 75478543 75478561 CATACCACCCTTAACACGC 59 75478590 75478608 CTAACCAGGGACAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069969.1 ENSRNOG00000058583 ENSRNOT00000072787 3 1 1 66 8 43144309 43144333 CATGTCTTACCAGATTTACAGTTCC 60 43144265 43144284 AACTGATGCACAGAACACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 1 1 1 60 8 43835779 43835800 GTCCATTGTCTGGTCTATTCTG 59 43835821 43835842 TGTCTGGAAAGCTCTGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000059300 ENSRNOT00000091862 1 1 1 60 10 45963489 45963507 AGAGACTTTGACAGCCCAG 59 45963529 45963549 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061848 ENSRNOT00000081635 3 1 1 60 14 112898440 112898458 ATGAGGTTTATCCGAGGCG 60 112898398 112898418 GGTCAGAATAATGTAGTGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055547.1 ENSRNOG00000049883 ENSRNOT00000072038 2 1 1 96 7 5700136 5700155 TTGACAGATGATCCTCAGCT 59 5700208 5700234 GGGTGAGGAAGATAATTATTAACCC 59 Novel Rattus norvegicus 81 AABR07035819.1 ENSRNOG00000046565 ENSRNOT00000073701 2 1 1 69 12 23598976 23598994 TCACTCTGTAGACCAGGCT 60 23599027 23599045 TAATCCCAGCACTTGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029696.1 ENSRNOG00000061797 ENSRNOT00000078935 2 1 1 81 10 44947130 44947148 CAACATCACACTGGTCCAC 59 44947066 44947087 CATCATGTCGATACTGAGGAG 58 Novel Rattus norvegicus 81 AABR07029696.1 ENSRNOG00000061797 ENSRNOT00000078935 3 1 1 81 10 44947122 44947140 CACTGGTCCACCTCATCAG 60 44947058 44947082 GAGATGTACATCATGTCGATACTG 59 Novel Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 2 1 1 67 10 83536083 83536102 CTTGGCATTAGTCACTTGGG 59 83536134 83536154 TACCAGAAGCCATGTACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051658.1 ENSRNOG00000056447 ENSRNOT00000090508 1 1 1 60 3 18787833 18787852 CATGGAGACTGAAGATGCTG 59 18787875 18787893 TGTGGGTGGGTTACTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054522 ENSRNOT00000082811 1 1 1 77 12 23689116 23689134 CACTTGGCAGCACATACAC 60 23689057 23689075 TTTGCATGTCCTCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056917 ENSRNOT00000078229 1 1 1 60 2 219485057 219485077 ATGGCATGATATCGAAGATGG 58 219485017 219485036 CACATTTGGAGCACATTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059290 ENSRNOT00000087224 3 1 1 66 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951563 186951583 CATTCAGATGTTCACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053830 ENSRNOT00000081749 1 1 1 60 10 94448397 94448417 TAAACCTACCCTGTGTACTCC 59 94448438 94448457 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 3 2 2 63 X 66516294 66516497 CTTGTTCCAAATGTAGTAGGAAGG 60 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0691.2 ENSRNOG00000051080 ENSRNOT00000076463 1 1 1 60 X 68187633 68187652 ATAGAGGACACATGACTGGA 58 68187592 68187613 CCATATTTGTAAGGAACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058423.1 ENSRNOG00000058042 ENSRNOT00000091186 3 1 1 141 7 115946623 115946641 TTTCCTGAAGAACGGAAGC 58 115946746 115946765 ATGGGAAGGAGTTCCTAGC 59 Novel DesignRelaxed Rattus norvegicus 81 5S_rRNA ENSRNOG00000045172 ENSRNOT00000070439 2 1 1 60 3 137613145 137613163 GAACAGGCTTTGCTTTGTC 58 137613187 137613205 TTCAACTGCTTATAGGCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053613.1 ENSRNOG00000048921 ENSRNOT00000071786 3 1 1 60 3 116072616 116072634 ACATGGAAACAACCCTGGA 59 116072655 116072676 CTTGTATCTACAGCTCCTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061258 ENSRNOT00000091055 1 1 1 61 14 47375048 47375069 TGAAAGTTGGAACAGTACAGAG 58 47375008 47375029 GTTCTATGTGTCATTCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059985 ENSRNOT00000082162 1 1 1 60 17 82465992 82466013 GTGTCACATGTGCATTATTAGG 58 82465953 82465974 TAACACAGAGCATAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000055783 ENSRNOT00000087315 2 1 1 61 2 205314531 205314549 GATTGGTATGCGCCTTTGG 60 205314572 205314592 GTAGAATCTCCTGATGCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0815.11 ENSRNOG00000047520 ENSRNOT00000076466 1 1 1 84 5 77917713 77918081 TGCTCTACAGTAGAACAAAGGA 59 77917650 77917668 TCCCTAGTGATTCCATGCG 59 Novel Rattus norvegicus 81 Rn60_20_0046.4 ENSRNOG00000057666 ENSRNOT00000086191 2 1 1 60 20 2492375 2492396 GATCTGGAGAACTTCTGAACAC 59 2492336 2492357 GAAGCTAGTACAAAGTTTCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059329 ENSRNOT00000091975 1 1 1 66 1 135581392 135581410 TTATCCATTGCACTCCGGA 59 135581344 135581362 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058945 ENSRNOT00000086686 3 1 1 91 14 113190864 113190882 TTTCCCAGGGTAAGGTCAC 59 113190791 113190811 GGGCAATATGAATAACACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036145 ENSRNOT00000054268 1 1 1 60 14 89011324 89011342 TGATCTCGGAAGCTAAGCA 59 89011365 89011384 ATTGTTACATTCTCCCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000076715,ENSRNOT00000089351 3 2 2 60 13 78997990 78998008 ACCAACCTTAGCTTATGCC 58 78998029 78998050 GTTGAAGGAGTAGGTATTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059226 ENSRNOT00000077834 3 1 1 60 1 282379436 282379455 TTTCCAAGGATAGAGCTGGG 59 282379395 282379413 TCCAATTACTCTGGCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059948 ENSRNOT00000082973 3 1 1 61 1 56860112 56860133 GACAACAGAAAGTCAAGAACAG 58 56860072 56860091 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048957.1 ENSRNOG00000048415 ENSRNOT00000075294 3 1 1 60 5 98684076 98684094 TTACCCTCTGTACATCCGA 57 98684034 98684054 CACCATGTAGTGGAACTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041968 ENSRNOT00000063721 2 1 1 79 4 50674116 50674134 GATCTTGGTGGCTAAGCAG 58 50674055 50674073 GCTTGTTCTCATGGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029918.1 ENSRNOG00000057831 ENSRNOT00000080593 3 1 1 80 10 60199587 60199609 TTGCTCAAGTTGTGTTCTGAC 59 60199648 60199669 GAATGGGATGACCATAATGAGG 59 Novel Rattus norvegicus 81 Rn60_7_1411.1 ENSRNOG00000053703 ENSRNOT00000089765 1 1 1 105 7 143291047 143291169 AGTCAACATCTCCGTGGTG 60 143290960 143290978 ACCATAGGAGAAGCTGCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061133 ENSRNOT00000081008 1 1 1 60 4 102876828 102876846 GAGTGTCAGTAGGAGGCAG 59 102876786 102876804 AGGATGTTGGTGAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000055611 ENSRNOT00000084467 3 1 1 60 1 88411755 88411773 ATTCACTGCCTGTTCTACC 57 88411713 88411733 GGATGACAGTTTCTATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055115 ENSRNOT00000079551 3 1 1 60 5 5601715 5601734 CTTAAGTGCAGAGTCAAGGA 57 5601674 5601693 TGACTGAAGACTGATCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051709 ENSRNOT00000085571 2 1 1 60 3 54140903 54140925 GTAGTATCTAAGTACATGGAGCC 58 54140942 54140963 AATTCAATCTCCTGCTCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059718 ENSRNOT00000081322 3 1 1 60 5 154482822 154482843 ACAGAGAAGATGATAGTCTTGG 57 154482862 154482882 TACAGCAAGCTTCACTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060080 ENSRNOT00000085065 3 1 1 60 14 20067083 20067101 TGATCTAACTGGCTAGGCG 59 20067041 20067060 GGAGGCATTTACATGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057801 ENSRNOT00000081166 2 1 1 81 2 30580278 30580296 ATCTGAGGCACGATTACTG 57 30580215 30580233 TGGATGCTAAAGAATGCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000056880 ENSRNOT00000086858 3 1 1 60 2 260144026 260144045 GGACTTCTGTCAGTAATGCA 58 260144068 260144086 CCTTAGAGGAAGACTCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059864 ENSRNOT00000087676 1 1 1 60 1 48643751 48643769 GCTACGTCTACCTAGGCTC 59 48643709 48643727 GTTCCACCACTAGTCACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056864 ENSRNOT00000081238 2 1 1 70 1 261223205 261223224 AGTCTTTGAGTTCACTTGCT 57 261223256 261223275 CATGTCATCCTTGCATAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059637 ENSRNOT00000080375 3 1 1 62 1 267483402 267483420 GGGAGTCTATGTCTACGCT 58 267483443 267483464 TGGTAGGCTGTTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001064.1 ENSRNOG00000017678 ENSRNOT00000023779 2 1 1 80 1 36954965 36954985 ATACTCCACTGATGTCAAACC 58 36954903 36954926 TATTCAGAGGTTCCATCTTTGG 58 Novel Rattus norvegicus 81 Sry3 ENSRNOG00000061370 ENSRNOT00000088272 1 1 1 60 Y 645873 645894 CACTATCATATACGGACAGGAC 58 645834 645852 TTTCTGGTTCTTGGAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057383 ENSRNOT00000084124 2 1 1 60 14 108524859 108524877 GGCTTAGCCACTGTACTCC 60 108524817 108524838 TGATTCTCCCATATCTGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014983.1 ENSRNOG00000041525 ENSRNOT00000063278 3 1 1 77 14 42763726 42763750 GGAGTACCTAATAAATGTGACTTCC 59 42763783 42763803 TGTCCCAAATATCACATGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043279.1 ENSRNOG00000058517 ENSRNOT00000087468 2 1 1 81 19 26985602 26986791 ATCCAAGAACAACAGGCCA 60 26986835 26986854 AATTGACATGACCACCTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052658 ENSRNOT00000083228 3 1 1 60 14 41255041 41255060 TGGTGGCTATGTCACATGAG 60 41255082 41255101 TGAGCATAGATACAACCGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056856 ENSRNOT00000089295 3 1 1 60 1 146310298 146310316 TCTTCTGCCAGGGAAACAG 60 146310338 146310358 GGAGATAGACCTTACCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014478.1 ENSRNOG00000043813 ENSRNOT00000069080 3 1 1 65 14 16802955 16802975 GCCATATCTGACGTTCAACAC 60 16803001 16803020 ATATGGAGGCAAATCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA13 ENSRNOG00000059389 ENSRNOT00000078535 3 1 1 60 6 128749255 128749273 GGTGATAATGACTGTGCCG 59 128749213 128749232 GACTGCAAAGCTTCTCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053821 ENSRNOT00000085240 2 1 1 60 14 76840917 76840935 GAGGACAAAGTCCAGAACC 58 76840959 76840977 ATCCTTGTACAAAGGCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD125 ENSRNOG00000051515 ENSRNOT00000082663 3 1 1 60 14 85277073 85277092 TTCCTCTTCCTGAGTGTCTC 59 85277111 85277133 CCTTTAGTCAGTTTCTTAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058884.2 ENSRNOG00000057943 ENSRNOT00000079811 1 1 1 80 7 141643216 141643234 GATGGCACTCCTGTAACTG 58 141643278 141644320 AAGTTCTGTATTGCCCTCG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056534 ENSRNOT00000083400 1 1 1 60 5 120390276 120390294 AAGAGGACAACCTTCCCTG 59 120390317 120390336 CTTGTACATCCTTGACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.4 ENSRNOG00000057972 ENSRNOT00000089870 2 1 1 80 4 114822759 114822782 TGATGGTAGTGGATAATGAAGAGG 60 114822565 114822721 TACTGTCTTCATCCAGCCAG 59 Novel Rattus norvegicus 81 AABR07053509.1 ENSRNOG00000057149 ENSRNOT00000084122 3 1 1 80 3 111815925 111815947 TTCTCACAGTTTCTCGAATGG 58 111815861 111815880 CTGAGTCCCTGAAACTTGTC 58 Novel Rattus norvegicus 81 SNORA24 ENSRNOG00000055813 ENSRNOT00000083091 3 1 1 60 2 23481226 23481246 CTTGCTACTGGTAAAGCAGTC 59 23481267 23481286 GTTATTTGTGCACACCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 1 1 1 80 12 2262269 2262291 TTCTCCTTCCCAGGAAGGA 60 2262203 2262221 ACCAAGAGCTTGAGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 2 1 1 81 12 2262269 2262291 TTCTCCTTCCCAGGAAGGA 60 2262202 2262221 TACCAAGAGCTTGAGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC111734.2 ENSRNOG00000059725 ENSRNOT00000085688 2 1 1 60 13 89243343 89243364 CAAACAAACAGAAATGCTTCCC 59 89243384 89243403 TCCGTAGTAACATCAGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060977 ENSRNOT00000080366 2 1 1 60 6 138014529 138014550 AACAGTACACAGGAGACTAACG 60 138014569 138014589 CGCTTCAAGAACTTGAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054876 ENSRNOT00000088349 3 1 1 60 1 41003939 41003962 ATATCCCTACAACTTCTCAGAGTC 59 41003980 41003999 TTCCTGCATAGTTTGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060575 ENSRNOT00000080664 2 1 1 60 12 6108548 6108567 CCATATACACAGAGCTGCAC 59 6108507 6108526 GAACGTATTCTGAGCACTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059222 ENSRNOT00000081487 2 1 1 60 3 17888236 17888258 GGAACGATACAGAGAAGATTAGC 59 17888198 17888216 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115322.2 ENSRNOG00000054405 ENSRNOT00000085983 1 1 1 136 3 175708731 175708987 ACGTATGCTGGGTAGAGTG 59 175709086 175709105 CTTTCTGCATTCTTCGGGAG 59 Novel Rattus norvegicus 81 AABR07069324.1 ENSRNOG00000052334 ENSRNOT00000092214 2 1 1 116 8 17562177 17562195 CTCAAGGGACTGTCTCCAG 59 17562077 17562098 TTCTGTTCGTTCACACTTGG 59 Novel Rattus norvegicus 81 AABR07019512.1 ENSRNOG00000046236 ENSRNOT00000074277 2 1 1 60 15 107486668 107486687 AACTGTCCATCCTCAGACTC 59 107486710 107486728 TATGACCATATGCCTGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0740.2 ENSRNOG00000051175 ENSRNOT00000076615 1 1 1 80 X 73082070 73086677 ATCAGGACCTTGAAAGGTAGAG 59 73082011 73082032 CTGGATATGACACTGTTTCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056677 ENSRNOT00000079286 1 1 1 60 5 90533585 90533604 GCATGTATAGCTGCTGTGTC 59 90533624 90533645 TGACATAGTCTCTTTCCTCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gjd3 ENSRNOG00000051691 ENSRNOT00000084275 1 1 1 202 10 86890158 86890176 ATCATGCTGATCTTCCGCA 60 86889974 86889992 TAGATGACGAACAGCACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052970 ENSRNOT00000085616 1 1 1 60 2 55825620 55825640 ACAGTTGATTCAGCTATTGGG 58 55825662 55825680 AAGAGTGAGGGAGGAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052970 ENSRNOT00000085616 3 1 1 60 2 55825578 55825597 GAGGGTGATCTATCTGCCAC 60 55825616 55825638 CAATAGCTGAATCAACTGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061123 ENSRNOT00000080893 3 1 1 61 2 205892261 205892279 GTGACTGCTATGTCACAGG 58 205892304 205892322 AGCATAGACTTGGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029732.1 ENSRNOG00000054498 ENSRNOT00000092113 2 1 1 121 10 48498088 48498109 TGTGGAGCCAGCTATAAGC 60 48498193 48498212 GTCACTTCAAAGAACCTGGG 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054380 ENSRNOT00000090551 1 1 1 60 5 65696141 65696159 CAAGGAGGTGAGTTCTCAG 57 65696099 65696117 GGCTTCTTCTGTCTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000046264 ENSRNOT00000073425 2 1 1 60 18 30425993 30426012 ATCAGCATCTTCAGAGTTGG 58 30426035 30426053 TAGAGCAAACCACCTTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021204.1 ENSRNOG00000055008 ENSRNOT00000082129 3 1 1 81 13 60619435 60619453 CTTCCAACTGCTACTGCTG 59 60619492 60619516 CCCAAAGTATGAGTAGTCTATTCTG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AC095852.1 ENSRNOG00000050664 ENSRNOT00000071183 3 1 1 60 3 153533142 153533160 GCCTTGAACTCAGAGATCC 58 153533183 153533202 GCTCACACCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028795.1 ENSRNOG00000061514 ENSRNOT00000078827 2 1 1 60 17 86657387 86657407 AAGATAAAGGTGGACAACCAC 58 86655451 86655470 TAAACTTGAAATGGCTCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057845 ENSRNOT00000078090 1 1 1 60 1 215027281 215027301 ACTGAAACTGGGACAGTATGG 60 215027241 215027260 AATCTCTGTCATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058542.1 ENSRNOG00000057768 ENSRNOT00000087720 3 1 1 87 7 123908418 123908736 CTATAAAGGGCCCTTCAGCA 60 123908350 123908373 GCCCATTCTGTATATTACTTCCTG 59 Novel Rattus norvegicus 81 AC128394.1 ENSRNOG00000055972 ENSRNOT00000082011 3 1 1 89 1 12906978 12906997 CGGTCGAGATCAAGAAAGGA 60 12907050 12907073 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 AABR07029192.1 ENSRNOG00000061166 ENSRNOT00000081865 3 1 1 80 10 12284299 12284320 GCTCTGTGTCCTTATTGTGG 59 12284238 12284257 GAGAGTTGAGTCATCAGCAG 58 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 1 3 4 86 9 88336277 88341889 CCATACAATATGAATATGGGAGCAG 60 88336215 88336233 TTTCAGGGAAACACTGGCA 60 Novel Rattus norvegicus 81 AABR07036513.2 ENSRNOG00000059134 ENSRNOT00000078837 3 1 1 64 12 45801471 45801491 CACACTCATACACATTCACAC 57 45801427 45801447 GTGTGAATGTGTATGAGTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122990.1 ENSRNOG00000033642 ENSRNOT00000041248 3 1 1 62 15 27164517 27164538 CTAACTTAACCCACTTAGTCCA 57 27164475 27164494 AGCCAAGAGTATCAAGTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053287 ENSRNOT00000090788 1 1 1 60 1 114337543 114337562 GAGAAGATTAGCATGGCACC 59 114337502 114337520 ATTATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114446.1 ENSRNOG00000059545 ENSRNOT00000001163 3 1 1 154 7 140608449 140608467 AATGGCATGATCCTGAAGC 58 140608609 140608628 CTAACTGTAGGGCACCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068007.2 ENSRNOG00000054475 ENSRNOT00000089203 2 1 1 80 9 77006317 77006340 CAGAGTCTCCTATGAGTACGAG 59 77006381 77006399 GAGAGTTCCCTCTCCACTC 59 Novel Rattus norvegicus 81 AABR07053866.1 ENSRNOG00000051005 ENSRNOT00000072407 2 1 1 88 3 131531514 131531533 CGGTCGAGATCAAGAAAGGA 60 131531439 131531462 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055077 ENSRNOT00000089186 2 1 1 60 9 120323382 120323400 TGTGTTACATGCCAGTAGG 57 120323340 120323359 TCAGAACACTGAGCTTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054036 ENSRNOT00000084215 2 1 1 82 5 138029499 138029517 GTTCTTAGAGCCACTGCAG 58 138029563 138029581 AGGGCAGACACAACTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054807 ENSRNOT00000080211 2 1 1 60 1 141076317 141076335 GAACCTCCAACAAGCTCTC 58 141076275 141076294 CAAATGTCTTGTCTCTGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000051409 ENSRNOT00000083073 3 1 1 73 1 143065427 143065445 ATGCCAGAGTAACGGAGAG 59 143065372 143065390 CATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065352.1 ENSRNOG00000059223 ENSRNOT00000084880 2 1 1 82 6 123286607 123286625 ATTCACCACGTTGTTTCCG 59 123286541 123286562 AATCCCATTCCAGAGCAGTC 60 Novel Rattus norvegicus 81 AABR07017798.2 ENSRNOG00000060147 ENSRNOT00000089064 3 1 1 80 15 31178376 31178576 TCCAATTAAACTGGGTGAGC 58 31178619 31178637 AAGCTATGGATCCCTCTGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057140 ENSRNOT00000084778 3 1 1 61 1 161893117 161893138 GGATACAGACAAGATTAGCACG 59 161893077 161893098 GAGTGCTTTACGAATTCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047212.1 ENSRNOG00000060477 ENSRNOT00000090963 1 1 1 63 5 24145768 24145787 TGGACTAGAAATCCATTGGG 57 24145813 24145831 TTCTCTTACCGTAGTCGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.1 ENSRNOG00000053459 ENSRNOT00000081806 3 1 1 69 15 29246143 29246162 TTACTCCTAGGCCTTCACCT 60 29217582 29217600 GTTTCACCTGTTGCTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 1 1 1 60 4 183941460 183941480 AGAAGGATCCTGGAGAGCA 60 183941504 183941522 GATACTGCTTCAGACTCGC 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000057210 ENSRNOT00000088875 3 1 1 60 6 75099456 75099476 TATAACCACAGAGCTTAGGCA 59 75099495 75099516 TCCTTAAGAGATCCTACCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.2 ENSRNOG00000055072 ENSRNOT00000085556 2 1 1 82 1 99868060 99868078 TCAACAGATACCTCTGCGG 59 99867080 99868017 ATGGTAATTGTGGCTATAGCAG 58 Novel Rattus norvegicus 81 AABR07017693.2 ENSRNOG00000053791 ENSRNOT00000085082 1 1 1 74 15 30157651 30157669 TTTCACTGGTGGTCCTGTG 60 30157055 30157073 GAGATTCTGGGTTCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061517 ENSRNOT00000092070 2 1 1 79 3 94518646 94518664 CTTAGAGGCATTGCAGGTG 59 94518703 94518725 TGAGCATAGACATATCCTCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061005.1 ENSRNOG00000059007 ENSRNOT00000082333 1 1 1 82 4 102665568 102665868 TGGATTCCTGGAGCAACTG 60 102665914 102665932 ATGGAAGCTGACTCTCCAG 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000054660 ENSRNOT00000090290 2 1 1 60 10 111037512 111037533 TGGTGGTGTTCTTATATCAGTC 58 111037551 111037572 AGCTATGATGAACAAAGGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053137 ENSRNOT00000077459 2 1 1 60 5 101613988 101614006 TCGCCTGCATATTCCTACG 60 101613946 101613965 AGGTTTGTCTCCTCAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tcap ENSRNOG00000060511 ENSRNOT00000085408 2 1 1 80 10 86337797 86337820 AGTGGAAAGACCTCATCTGTC 60 86338054 86338072 GTGGTAGGTCTCATGCCTC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059031 ENSRNOT00000087362 3 1 1 60 3 34622598 34622617 TGCACACTGGGTAGAATAGG 59 34622638 34622658 CTTGACCTAAGACATGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059425 ENSRNOT00000081295 2 1 1 60 1 198235266 198235288 GGAACCATACAGAGAAGATTAGC 59 198235308 198235326 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131483.1 ENSRNOG00000007816 ENSRNOT00000010275 3 1 1 80 3 15773028 15773048 CCAGAATTTACCACCTCCG 58 15773091 15773110 AGAGTGGCAGGTAAATTTGG 58 Novel Rattus norvegicus 81 AABR07021530.1 ENSRNOG00000047609 ENSRNOT00000071148 1 1 1 60 13 76855852 76855872 CCTAGTTTGTCTGATTCAAGC 57 76855812 76855831 GGCACAAACAATTACTTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053853 ENSRNOT00000085219 3 1 1 60 1 235254001 235254021 GCTAGAAAGTGTGACTTCAGC 59 235253961 235253982 TTTCAAGACCCTGTAAATGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054444 ENSRNOT00000084406 3 1 1 60 20 47554075 47554093 GACAGACTGGGCAGAAGAG 60 47554033 47554052 GTTCTATACTCCAGGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056693 ENSRNOT00000085025 3 1 1 60 1 248174116 248174134 ACTTTGATCATCACGGTGG 58 248174157 248174176 TCAGACTTGGAGTACAATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0043.4 ENSRNOG00000056541 ENSRNOT00000083748 1 1 1 60 20 2178751 2178773 GACATATTCCTTCTGACTCTGAC 59 2178792 2178811 ATGAATGAACAATGTGGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049792.1 ENSRNOG00000053773 ENSRNOT00000080559 2 1 1 82 5 138462435 138462454 TTCAATCCATCCCACTTCTC 57 138462371 138462390 ATAGGGAAGGGTGAGATGG 58 Novel Rattus norvegicus 81 AABR07044824.1 ENSRNOG00000057124 ENSRNOT00000082888 3 1 1 80 20 22420992 22421010 GGCAGGGATGAAATGAGTC 58 22420927 22420950 CGAAGATAAACTGTATGCCCT 58 Novel Rattus norvegicus 81 SNORA55 ENSRNOG00000053801 ENSRNOT00000090034 3 1 1 60 7 2874379 2874397 AAGAGGAAATTCAGACGGG 57 2874419 2874439 TAGCAGAGTTGTAGAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065445.1 ENSRNOG00000057803 ENSRNOT00000085943 1 1 1 80 6 128985572 128987917 AAGGAGAAGGCAGAACCTC 59 128985510 128985530 TATCCGGTATTTCCCTATGGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059946 ENSRNOT00000088106 3 1 1 60 20 14164591 14164609 GCTCTCGAGACAGATGAGG 59 14164549 14164569 TCCAGCATCGAAATAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059147 ENSRNOT00000091446 1 1 1 60 20 66375 66394 GCTGGCTGCAATATCTTGTC 60 66414 66435 GTTAGATCAGCAGAGTCAATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059147 ENSRNOT00000091446 2 1 1 60 20 66379 66399 GCTGCAATATCTTGTCTACAC 57 66419 66439 GCTAGTTAGATCAGCAGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061902.1 ENSRNOG00000000021 ENSRNOT00000000022 3 1 1 203 4 151987132 151987152 TACTTGGACGTCCGAAAGG 59 151987319 151987337 CTGGATCACGTAGCTGAGG 60 Novel DesignRelaxed Rattus norvegicus 81 Telomerase-vert ENSRNOG00000054124 ENSRNOT00000090594 1 1 1 83 4 150151443 150151462 TGTTATAGCTGTGGGTTCTG 57 150151379 150151397 ATGTCTGAACTTTCCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055461 ENSRNOT00000082980 1 1 1 60 3 176293429 176293447 AGGTTTATCCAAGGTGCGA 59 176293387 176293410 CCTATGGATCTGTAGATTGAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040878 ENSRNOT00000062631 3 1 1 64 14 60192210 60192228 TGTTCAAGCCTGACCTCAG 60 60192164 60192184 AAAGTCTCCCATCTGAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051987 ENSRNOT00000087696 1 1 1 60 5 58591043 58591062 CGTGTTCCCAGAAGAAAGAC 59 58591002 58591021 GAACATAACCTTCTCCTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054895 ENSRNOT00000078377 2 1 1 60 13 82960358 82960381 CGATACAGAGAAGATTATCATGGC 59 82960321 82960340 GAAGCTTCATGAATTTGCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054895 ENSRNOT00000078377 3 1 1 60 13 82960357 82960380 GATACAGAGAAGATTATCATGGCC 59 82960320 82960339 GGAAGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gosr1 ENSRNOG00000003971 ENSRNOT00000077038 1 1 1 80 10 63412198 63412216 ATGGATCAAGCCAAGACAG 58 63412259 63412547 CGTTTACTCCTGTAAGCCTC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034753 ENSRNOT00000052876 1 1 1 60 3 51430610 51430631 ATTCTAGTCTGATCTTGGAAGC 58 51430571 51430591 GTTTCCCATCCAAGTACTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127191.1 ENSRNOG00000049325 ENSRNOT00000054636 1 1 1 60 7 11072745 11072763 GCATGGAAACAGTGACCAG 59 11072703 11072721 TTCACTGTCTCTGCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058385 ENSRNOT00000091926 1 1 1 75 3 80018735 80018753 GTCAATGTTGTTGGCAGAC 58 80018792 80018810 GTCATCTTCTTGCAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059524 ENSRNOT00000089214 1 1 1 80 1 116773643 116773663 GGGTCTATGTCGATGATAGCA 59 116773583 116773604 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045399 ENSRNOT00000070666 2 1 1 60 13 101869789 101869807 ATCTCAGAAGCTAAGCGGG 59 101869747 101869765 GCTGTTATGACTCCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060244 ENSRNOT00000081528 2 1 1 60 5 135207867 135207889 GGAACGATACAGAGAAGATTAGC 59 135207829 135207847 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061392 ENSRNOT00000087975 1 1 1 60 3 22048168 22048186 GAGAAGATTACCATGGCCC 58 22048210 22048228 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053164 ENSRNOT00000077778 2 1 1 64 3 11056809 11056829 TTGCTTAGGCATCATGTACTG 59 11056765 11056783 GTAGTCCTTGCATAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053065 ENSRNOT00000084026 3 1 1 60 15 4539127 4539145 GTAATGACTGTGGAGAGCG 58 4539169 4539187 AAACGCATACAGGCAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043975 ENSRNOT00000069242 2 1 1 60 3 117069830 117069852 CAATATCCTCTGTTCTTGGAAGC 60 117069870 117069890 TCTCCTGTCCAAGAACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055134 ENSRNOT00000085509 2 1 1 60 13 109881372 109881391 AGTCTCCATTGAGGAAGACG 59 109881414 109881432 CATACCCTGACCAGGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053545 ENSRNOT00000082823 1 1 1 60 10 95583813 95583834 CTTAGCAGTTCTTTCCTGATGG 59 95583851 95583873 GCCAGATAGTGAATTTCTATCGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.1 ENSRNOG00000054109 ENSRNOT00000077156 3 1 1 125 11 87118386 87118406 CCAGACGGTGAGATCTCTG 59 87118279 87118297 TTCTACCTTATGGCGGAGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060819 ENSRNOT00000079179 2 1 1 60 13 2964765 2964789 AGAGTACGATCTTCTAAGAACAGAG 60 2964729 2964750 GTGCCTACTCATATTCTTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060301 ENSRNOT00000090530 1 1 1 60 3 46265957 46265979 GGAACGATACAGAGAAGATTAGC 59 46265919 46265937 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055013 ENSRNOT00000091695 2 1 1 60 13 47876686 47876705 AAGTAGTGCTTTCTTGCCAG 59 47876645 47876664 ACATATTCCCATGTGTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000060741 ENSRNOT00000082884 1 1 1 84 20 34992117 34992138 TGGTACTTTAAGAGGCTAACAC 58 34992183 34992201 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061712 ENSRNOT00000081663 1 1 1 69 5 107273410 107273428 ATGAGGTTTATCCGAGGCG 60 107273359 107273378 AGGTAAGCATGTTGAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061712 ENSRNOT00000081663 3 1 1 70 5 107273410 107273428 ATGAGGTTTATCCGAGGCG 60 107273358 107273378 GAGGTAAGCATGTTGAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.1 ENSRNOG00000051758 ENSRNOT00000087643 1 1 1 65 17 44738866 44738884 AGAAGACTCGCATCATCCC 59 44738913 44738931 GTTTGTTGAGCTCCTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060637 ENSRNOT00000088982 3 1 1 81 19 43403053 43403072 CCTGCTTTCCTTTGACTGTG 60 43403113 43403134 GCAGTTACTCTGCTAATGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050530.1 ENSRNOG00000050867 ENSRNOT00000075406 1 1 1 88 5 168474712 168474730 CGGTCGAGATCAAGAAAGG 58 168474784 168474806 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000054566 ENSRNOT00000089030 3 1 1 62 19 44829896 44829914 TAAGGACGATCTGGCTGTG 59 44829940 44829958 GATCAGCCAAGTCAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054233 ENSRNOT00000086376 2 1 1 60 19 44299873 44299893 AACAATGCAGGGAAGATTAGC 59 44299915 44299933 CACCTCACAAATTTCCGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056399 ENSRNOT00000089704 2 1 1 60 15 73123725 73123743 CTACTGTGTCACATGTGCA 58 73123766 73123785 TTGAGCATCGACATAGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.1 ENSRNOG00000053490 ENSRNOT00000071850 2 1 1 175 15 35647010 35647029 AACTTGCAGCCTCTAATACC 58 35647167 35647188 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000055625 ENSRNOT00000088922 1 1 1 62 1 251057885 251057903 ATGAGGTTTATCCGAGGCG 60 251057841 251057860 TCAGTGTTGAGTCTAAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051737 ENSRNOT00000091111 1 1 1 60 13 93859249 93859267 ATCTGGAAGATGGGATCGG 59 93859289 93859309 GAGATGTTGTAACCTCAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051737 ENSRNOT00000091111 2 1 1 60 13 93859248 93859266 GATCTGGAAGATGGGATCG 57 93859289 93859308 AGATGTTGTAACCTCAGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068852.1 ENSRNOG00000053409 ENSRNOT00000092036 1 1 1 105 9 121991691 121991710 CTTCACTCAGGAAGAGTGGG 60 121991772 121991998 CAAATTGTAACCTATAGCAGTGAGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061759 ENSRNOT00000090807 3 1 1 60 15 45810432 45810452 AAAGAGGCTATGTCTACACTC 57 45810392 45810414 TAGACTACTGATCACTCAGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061082 ENSRNOT00000084477 2 1 1 67 7 140904475 140904493 CTTATCCATTGCACTCCGG 58 140904524 140904542 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055682 ENSRNOT00000088809 1 1 1 60 15 12549285 12549305 TAACATCGGAACGATACAGAG 58 12549327 12549345 GATTTGCGTGTCATCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 3 1 1 60 2 2510227 2510248 ACTGGAACTTATCAGTTGCC 58 2510269 2510289 TTCTGTGTTCTTGTACTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041057.1 ENSRNOG00000046961 ENSRNOT00000073914 3 1 1 82 X 118131813 118131831 TGGCATATAGCAGGTCCTC 59 118131877 118131895 CTCCACATAACAGGTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000061191 ENSRNOT00000087347 1 1 1 60 X 152097461 152097480 CTGACAAAGATGGAAGAGGG 58 152097420 152097438 GGTGAACAGGTCTAAACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000061191 ENSRNOT00000087347 3 1 1 60 X 152097460 152097479 TGACAAAGATGGAAGAGGGT 59 152097419 152097438 AGGTGAACAGGTCTAAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068650.1 ENSRNOG00000031795 ENSRNOT00000044153 2 1 1 80 9 114151423 114151444 GATAGATTGTCTGTGCCATCTG 59 114004221 114151382 TCCTTGGCTTCTCTTGACG 60 Novel Rattus norvegicus 81 U4 ENSRNOG00000060452 ENSRNOT00000085791 1 1 1 61 15 55520389 55520408 AGTATCGTAGCCAATGAGGT 58 55520347 55520368 GTGGTCTTGACTTTAGATTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055039 ENSRNOT00000082441 1 1 1 60 15 41809796 41809816 TGTGTAAGTGCCTTTGAAGAG 59 41809838 41809856 CTAGCTGGGTGAATGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058155 ENSRNOT00000083775 1 1 1 73 19 21125928 21125946 TGTAGGTATGGCTGCTGTG 60 21125978 21126001 CACTGAGTGTAGATATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031738.1 ENSRNOG00000055037 ENSRNOT00000090160 2 1 1 97 18 31114014 31114032 AGAAGGAAGAGGCTGAAGG 59 31113935 31113953 AGATAGTGAGCTGTTGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061120 ENSRNOT00000083846 1 1 1 62 15 25633798 25633822 CTACATAGATAAGGTTAGCATGACC 59 25633760 25633780 GGAGTTCTTGCCAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051602 ENSRNOT00000084654 3 1 1 60 6 108915268 108915288 CCCAATAGAATACTGAGGTGG 58 108915228 108915248 CAGAACAAACTACTTGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551497 ENSRNOG00000057156 ENSRNOT00000085882 1 1 1 60 11 29069357 29069376 CTATGGTTATGGCTGCTGTC 59 29069399 29069417 GTAGAAGCCACAGGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057894 ENSRNOT00000091844 3 1 1 60 15 8774537 8774555 CAGTAAGTACATGGCCCTG 58 8774495 8774514 TGTCAGCTATGTTGATTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061873 ENSRNOT00000091692 1 1 1 60 18 11766646 11766666 TCAAGGGTATACGAGTAGCTG 59 11766606 11766626 AAACAGAGATGGCTTGTTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044937 ENSRNOT00000070204 3 1 1 60 18 27292894 27292913 CAGATCGCATCCAATCTCAG 59 27292932 27292954 AGCAGTCTCTAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053806 ENSRNOT00000086449 1 1 1 60 X 1517978 1517996 GAGTTGGGAGGTGAGTTCC 60 1517936 1517955 CTCTTCTGTCCAGTTTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691301 ENSRNOG00000056993 ENSRNOT00000081909 3 1 1 60 1 230207285 230207305 TGACACCATTGAAGAACTGGA 60 230207326 230207345 TCATCAGTGAGTCCAAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000053940 ENSRNOT00000091070 3 1 1 64 18 36888442 36888461 ATTTACCTACCCACCCTCAG 59 36888488 36888506 CTGAATTACCCTCCCACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054456 ENSRNOT00000083716 2 1 1 60 15 101142883 101142903 GGTCAAGGGTATAGGAGTAGC 59 101142923 101142943 AGTGGATTACCTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 2 2 2 80 4 164047279 164047298 GATTGGATGTCAACAAGCCT 59 164042717 164047238 CGAAGGAACTTCAGTTCATCC 59 Novel Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 3 2 2 80 4 164047281 164047299 GGATTGGATGTCAACAAGC 57 164042718 164047239 GAAGGAACTTCAGTTCATCCT 58 Novel Rattus norvegicus 81 AC130053.1 ENSRNOG00000049798 ENSRNOT00000071763 2 1 1 64 3 163658450 163658469 ATTTCTCTGTGTAGCCCTGG 60 163658496 163658514 TTGAGTTCAAAGCCAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059912 ENSRNOT00000082872 2 1 1 60 3 39945844 39945867 TGGTCCATAGGTAATGAGTTATCG 60 39945884 39945904 GGAGATCAACCTGTAACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680227 ENSRNOG00000037911 ENSRNOT00000075940 2 1 1 102 X 74315902 74315920 TAGTTTGTGTTGGACGGGT 59 74315985 74337720 GTTCTTCAGCATTACGCTCC 59 Novel InUTR Rattus norvegicus 81 U6 ENSRNOG00000056827 ENSRNOT00000086094 1 1 1 60 18 58972879 58972900 AATATTAACATGGCCACAGTGC 60 58972920 58972939 CTAGGTTTCGAATGCTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054092 ENSRNOT00000084978 2 1 1 60 18 51319733 51319754 GTGTTAGTAGGTGACAAGAGAC 58 51319773 51319793 ATTCTGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.3 ENSRNOG00000056285 ENSRNOT00000088974 3 1 1 90 6 139406412 139406433 CTATACCTGCAAATGGACAGTC 59 139406478 139406773 CTCCATAACAGTAACATTCACTCAC 60 Novel Rattus norvegicus 81 SNORA26 ENSRNOG00000055018 ENSRNOT00000090806 2 1 1 60 5 38932348 38932368 AAGGGTAAAGGAAGTCTCCAC 60 38932308 38932327 CAGGATCTAAAGAGGAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052454 ENSRNOT00000090231 3 1 1 60 3 48776848 48776866 CTGTCCCTAGAAGGGTTGC 60 48776806 48776825 TCTGTCCCGTACTAATGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053330 ENSRNOT00000077713 1 1 1 60 5 54337277 54337296 AGAAGATTTAGCATGGCCCT 59 54337319 54337337 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054562.2 ENSRNOG00000054123 ENSRNOT00000084056 3 1 1 60 3 160572504 160572522 GTCTTGGTCTTTGGCACTG 59 160572543 160572564 TTACTGGTAAGGAAATCAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060774 ENSRNOT00000090511 2 1 1 74 18 26426382 26426402 CCCATTCAGTAGCACATACAC 59 26426437 26426456 TCTGTCATCCTTGTGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054994 ENSRNOT00000082070 2 1 1 60 7 126244063 126244082 TGGTGGTGTTGTTCTATCAG 58 126244022 126244041 AGCTCAGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056905 ENSRNOT00000083588 2 1 1 65 X 33478087 33478105 TACATTTCCCAGGGCAAGG 60 33478040 33478058 TCGAGTTTCCTGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060856 ENSRNOT00000088961 1 1 1 60 X 103063856 103063879 ATAGGTATCAGAGAAGAGGAAGAC 59 103063819 103063839 CAGATGTTCATGTATCAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060257 ENSRNOT00000085753 1 1 1 60 7 58377023 58377041 AGAGACTTTGACAGCCCAG 59 58376981 58377001 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.2 ENSRNOG00000061459 ENSRNOT00000087987 1 1 1 60 15 35844374 35844395 ATACTACTGTTGTTCCCATGCT 60 35844411 35844434 CTGACATCCTTATTCCTCAAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055048 ENSRNOT00000091582 3 1 1 77 6 104272175 104272198 GCTAAGTTCAGTGACACATATAGG 59 104272121 104272141 TCATATCATCCATGCACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058584 ENSRNOT00000087202 2 1 1 60 15 27845186 27845205 TGTAATGATGCAGAGGACGA 59 27845228 27845246 GCTTCAGGAATTTGAGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054010 ENSRNOT00000083717 3 1 1 60 1 131869365 131869387 GATACAGAGAAGATTAGCATGGC 59 131869407 131869425 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000018378 3 1 2 81 17 13517568 13517586 AATACTGGCTTCCAGGCAG 60 13517895 13519136 AGTATACCTTGTGACACAGCT 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044895 ENSRNOT00000070162 3 1 1 60 4 121147381 121147399 CTCATCTGATCTCCAACGC 58 121147339 121147358 TTCTTCCTCTGAGCCAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.9 ENSRNOG00000058426 ENSRNOT00000081803 1 1 1 96 6 138852435 138852537 CATTTCCAAGCTGTGTCCTG 60 138852358 138852376 GAGACAGTGCAGGTGAGAG 60 Novel Rattus norvegicus 81 AABR07065656.9 ENSRNOG00000058426 ENSRNOT00000081803 3 1 1 100 6 138852438 138852541 ATGACATTTCCAAGCTGTGTC 59 138852358 138852376 GAGACAGTGCAGGTGAGAG 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000056893 ENSRNOT00000090399 2 1 1 60 15 84177383 84177402 GGGATCAGGTGGATTATCTG 57 84177342 84177364 GGACAGAGGACATATCATATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061200 ENSRNOT00000088436 2 1 1 60 15 85171660 85171678 TGGTCAAGGGTATACGAGG 58 85171618 85171636 AACTGAGAGCCTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059320 ENSRNOT00000085023 1 1 1 60 4 143425009 143425030 TGATACAGAGAAGATTAGCACG 58 143425050 143425069 GTCCTGGGACTTGAAATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059674 ENSRNOT00000090694 1 1 1 60 4 42884688 42884709 ATACAGAGAAGATTAGCATGGC 58 42884649 42884669 GGAACGCTTCACTAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071500.1 ENSRNOG00000042061 ENSRNOT00000065507 3 1 1 86 8 118618766 118618784 TTGCCTAAAGAGCAGAGGG 59 118618694 118618717 GGCACAGTCTATAGGAGCTG 60 Novel Rattus norvegicus 81 AABR07005779.2 ENSRNOG00000054418 ENSRNOT00000089740 1 1 1 60 1 198801438 198801456 TGATCTACGAGATGGCTGC 59 198801485 198801503 ATCTGAATTGGCTGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD66 ENSRNOG00000056119 ENSRNOT00000089119 2 1 1 60 11 83915943 83915962 GCTGATGACGTCTGTTAGTG 59 83915902 83915920 CCTCAATCCCATCATGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052458 ENSRNOT00000088240 2 1 1 64 11 72756790 72756808 GTTGAGTTCAGTTCAGGGC 59 72756744 72756762 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U8 ENSRNOG00000056260 ENSRNOT00000086705 3 1 1 61 7 2765392 2765411 AGACAGAACATGACAACAGG 58 2765435 2765453 CCAGGGTGTTGCATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0435.2 ENSRNOG00000053113 ENSRNOT00000083589 3 1 1 60 1 42133517 42133541 GTATATGTCCAAGAAGGTATAGCTG 59 42133559 42133577 GGATTCCTTGGGTAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059742 ENSRNOT00000080917 2 1 1 60 5 141358964 141358987 CAATACAGAGAAGACTACATGAGC 59 141359005 141359024 TGAACGCTTCAGATTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056974 ENSRNOT00000081114 1 1 1 60 5 65846399 65846417 AGTAGGTGGCAGAAAGGAG 59 65846357 65846378 TCATTCTAATCGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053542.2 ENSRNOG00000046653 ENSRNOT00000071731 2 1 1 60 3 112786693 112786713 CTCTTCTTCCTCCTCTTCCTC 59 112786653 112786671 AAAGGAGGTGGAGGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052911 ENSRNOT00000090282 3 1 1 60 18 62745438 62745457 GATTTATGGCAGGCTCATCC 59 62745479 62745498 CACAGTTTGCTCTAGCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052032 ENSRNOT00000078487 1 1 1 60 18 270884 270902 GAGAAGATTAGCATGGCCC 58 270926 270944 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057621 ENSRNOT00000089884 1 1 1 60 18 75933302 75933320 AGAGGCTGTCTCTACACTC 58 75933260 75933280 GTCAGGCTATCAGTCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000058685 ENSRNOT00000086075 2 1 1 60 3 138456633 138456651 TTGGTTCAGAGCAACTTCC 58 138456674 138456693 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054912 ENSRNOT00000079319 3 1 1 61 11 87547844 87547862 GAGAAGATTAGCATGGCCC 58 87547886 87547905 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056291 ENSRNOT00000082768 1 1 1 60 18 34128237 34128257 GACCATCTTCATTCAAGAGGA 58 34128277 34128297 TTGTTTAGAGGTTCTAGTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054586.1 ENSRNOG00000051007 ENSRNOT00000075530 2 1 1 67 3 162607775 162607793 GATCGCTGTGAGTTCAAGG 59 162607726 162607744 TTCTCTGTAGCTCTGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060493 ENSRNOT00000084863 3 1 1 65 10 105548631 105548653 GGAACGATACAGAGAAGATTAGC 59 105548677 105548696 GAACGATTCACGAACTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058201 ENSRNOT00000091590 3 1 1 64 7 122824372 122824393 CTGCACATACACTAAGATTGGA 58 122824417 122824436 TGTGTCAATCCTTAAGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055249 ENSRNOT00000087721 3 1 1 60 4 114560986 114561006 ATAAACTACCCTGTGTACACC 57 114561028 114561046 TGCATTCACGATACAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065031.1 ENSRNOG00000047682 ENSRNOT00000073216 1 1 1 81 6 105037113 105037135 CATGAGTTCTTTCAGAGTTCCAG 60 105037048 105037073 ACAACTTCCGTTTAAAGTGGTC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034413 ENSRNOT00000052536 1 1 1 60 11 41135412 41135432 TGCTCTCAGAAGCTAATCAGG 60 41135452 41135472 TTTCCAGGTGTTTCTCATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051886 ENSRNOT00000079281 3 1 1 60 5 82805207 82805225 GAGAAGATTAGCATGGGCC 58 82805249 82805267 TCTATGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062289.1 ENSRNOG00000055734 ENSRNOT00000080471 3 1 1 198 4 166882502 166882524 GTGCTTCTGTCTATTGTTCTAGG 59 166882325 166882343 ACGATGTCAGAGACACTGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061864 ENSRNOT00000082834 1 1 1 71 4 123261572 123261591 AAAGTTCAAAGTTCGCAGAG 57 123261520 123261540 CATTGAGATGTTCCTAAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052936 ENSRNOT00000084898 1 1 1 60 11 19816812 19816830 CAGGACAGGTACAGCAGAG 60 19816854 19816872 ATATGGACAGGGTGGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056085 ENSRNOT00000083136 3 1 1 60 11 27642524 27642542 GCGGAACCATTGAGAAACC 60 27642482 27642501 GGTGAGAACACAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000052120 ENSRNOT00000081392 1 1 1 60 6 133829663 133829682 ACCGATGATGAGATCTGGTG 59 133829705 133829723 ATGTCTGGTTACTTGGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000057748 ENSRNOT00000084952 2 1 1 60 11 47095108 47095128 TTGACTACCACACTTTCTCCT 59 47095068 47095089 CCCTTCATCTATCCCATAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 2 1 1 77 7 120138233 120138254 GCTATTAAATCAGGAAGGAGGG 58 120138175 120138196 TCCTGGAGATACAGAATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058168 ENSRNOT00000082060 1 1 1 60 9 111065940 111065961 AAGAGTAGACAAGTAACTGTGG 58 111065901 111065922 ATGGATCTTGAATGCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034498.1 ENSRNOG00000052877 ENSRNOT00000087747 2 1 1 60 11 73930940 73930959 TGCTTCCCAAGCTCTATGTC 60 73930982 73931000 ACCTTGCTATGAATGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064231.1 ENSRNOG00000058377 ENSRNOT00000078958 2 1 1 60 6 70276385 70276404 AATCCGGAAGAAGATTGAGC 58 70276427 70276445 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056817.1 ENSRNOG00000056010 ENSRNOT00000086104 3 1 1 80 7 42368826 42368849 AGATTTCACCTCACATGCGA 60 42368765 42368785 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07051733.3 ENSRNOG00000058552 ENSRNOT00000077772 3 1 1 80 3 20419228 20419377 GGCTTACAGGTGGTAAATGTG 59 20419168 20419187 TCGTGACAATTTCTTCCGGA 60 Novel Rattus norvegicus 81 Rn60_8_0651.1 ENSRNOG00000051285 ENSRNOT00000076238 3 1 1 82 8 65373348 65388420 TACAAGCTGTCTCAGTGCC 60 65373284 65373302 TTCTGTGTTCAGTGGAGGG 59 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000057568 ENSRNOT00000084982 3 1 1 60 11 61751948 61751968 TTCTAGTGGATAACAATGGGC 58 61751990 61752008 GAAGAAACAGCTCCCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049379 ENSRNOT00000073838 1 1 1 75 11 5785879 5785897 CTTACTGTGTTACGCCCTG 58 5785822 5785840 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043141.1 ENSRNOG00000033819 ENSRNOT00000045060 3 1 1 60 19 23832799 23832819 AGAAGCCTAAGAAGTCAACCT 59 23832836 23832859 TCATCTTCTACTGGATGTGTAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076750,ENSRNOT00000085052,ENSRNOT00000088581 3 3 6 80 10 74883734 74883979 GGAGAAAGATGAAGAGCTGC 59 74884022 74884040 GCCAGTTAGTGAGTCTCCT 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034316 ENSRNOT00000052439 1 1 1 60 7 71289689 71289707 ATCTCGGAAGCTAAGCAGG 59 71289647 71289665 GGTATTCCCAGGTTTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034316 ENSRNOT00000052439 2 1 1 60 7 71289703 71289721 CCCGATCTTGTCTGATCTC 57 71289661 71289679 TCCCACCCAAGTACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011733.1 ENSRNOG00000061317 ENSRNOT00000089083 2 1 1 60 2 167607185 167607203 AGAAGCCTACAGAACTCCA 58 167607143 167607161 AATTATGTGACGGGAGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052281 ENSRNOT00000079210 2 1 1 62 7 126031119 126031138 TACAGAGATTAGCATGGGCC 59 126031163 126031181 AAATATGGAACGCTTCGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058220 ENSRNOT00000091546 1 1 1 60 4 21904768 21904792 ACAGTAAAGAGATTAGGATAGTCCC 59 21904809 21904828 GGAATGCTTCATGAGTTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061452 ENSRNOT00000079635 1 1 1 60 17 25600751 25600772 TCCTCAAACAGAAGAAACTCAG 58 25600791 25600811 AAAGTATAACCGCCATAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014289.1 ENSRNOG00000058935 ENSRNOT00000089496 3 1 1 106 14 7500424 7500444 CTACAGATTCAATGCAATCCC 57 7500513 7500532 TAGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054187 ENSRNOT00000085036 1 1 1 60 17 75846128 75846147 GACACCGAGAAGATTAGCAG 58 75846168 75846188 GGAATGCTTCATGGATTTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053322 ENSRNOT00000080718 2 1 1 60 9 13654619 13654638 CCTAGGGTGAGACTTATCCA 58 13654578 13654597 CGTTTACAGAAATTGCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071966.1 ENSRNOG00000043180 ENSRNOT00000047859 1 1 1 148 1 174825950 174825968 AGAGCTCTTTCCTTACGGG 59 174825818 174825838 GATGATCCCATTGGTGCAC 59 Novel Rattus norvegicus 81 AABR07064999.1 ENSRNOG00000038335 ENSRNOT00000058373 3 1 1 60 6 103823921 103823941 GTTTGGTAGGAACAATTGGGA 59 103823963 103823981 TCTTTGTCATTGGCTCGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058435 ENSRNOT00000090016 1 1 1 60 7 55606846 55606864 GATGTATTGGCACCCTCGT 60 55606885 55606906 TCCACCACTAATTATGAAGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0708.2 ENSRNOG00000051234 ENSRNOT00000076263 2 1 1 164 10 71158762 71159486 TTCTGGGTTTCAGGTCTGG 59 71158616 71158635 ATCTAAGCAGAGCCTTTCCC 60 Novel Rattus norvegicus 81 snoU83B ENSRNOG00000058269 ENSRNOT00000091042 1 1 1 60 7 121298050 121298070 GTGATGAGACTCTGGAATGTG 59 121298010 121298028 GGAATGGTTCCTCAGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU83B ENSRNOG00000058269 ENSRNOT00000091042 2 1 1 60 7 121298048 121298066 TGAGACTCTGGAATGTGCG 60 121298006 121298024 ACAGGGAATGGTTCCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029023.1 ENSRNOG00000059756 ENSRNOT00000084112 1 1 1 80 10 2992425 2992447 AGATTTCACCTCACATGCG 58 2992490 2992509 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07058124.2 ENSRNOG00000053535 ENSRNOT00000080206 2 1 1 60 7 101147062 101147083 TCCCAAGAATCTTATTCTGCAC 59 101147100 101147122 GAAGTCTCTGAATCTCATCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068674.1 ENSRNOG00000057758 ENSRNOT00000085481 1 1 1 81 9 114326834 114326853 AGTTCCCATAGAGAAGAGGC 59 114324852 114326793 AGGTGACAAAGTTAGTTCAGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056499 ENSRNOT00000090344 2 1 1 60 4 38173028 38173046 ATTGCAGGTGTGACTACAG 58 38173069 38173088 GAGTAGATTCAGCCTCACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052439 ENSRNOT00000083758 1 1 1 60 8 128807763 128807781 AACGTTGGAGATGAAGCTG 58 128807800 128807823 CTCTGAGAAGTTGTAGGAATATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021759.1 ENSRNOG00000023269 ENSRNOT00000039633 3 1 1 138 13 90059483 90059502 ATGCTAAGAAGTTCGCAGAG 58 90059363 90059381 ATCTCTTCCTCAGGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055105 ENSRNOT00000087996 3 1 1 67 10 74742650 74742668 TTATCCATTGCACTCCGGA 59 74742699 74742717 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000052202 ENSRNOT00000086832 1 1 1 60 8 128107142 128107162 TCAATGATGACTACAACCTGC 59 128107181 128107202 AAGTTGTACTCATCATCCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000052202 ENSRNOT00000086832 3 1 1 60 8 128107139 128107159 GGTTCAATGATGACTACAACC 57 128107180 128107199 TTGTACTCATCATCCATGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015859.1 ENSRNOG00000058434 ENSRNOT00000078252 3 1 1 80 14 81703666 81703686 GAAGTAGAGAAGAAGCTGTGG 58 81703381 81703627 CTTGTTAGGCTTGTAGAAGGTC 59 Novel Rattus norvegicus 81 AABR07072761.1 ENSRNOG00000030494 ENSRNOT00000042769 2 1 1 60 2 195856200 195856219 GGACATTCCAATACCCAACC 59 195856159 195856178 CATCAGAGGGAGTTCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037536.1 ENSRNOG00000056810 ENSRNOT00000085588 2 1 1 81 X 23246289 23246311 CAAGACTTCCGAAACATTCTG 58 23246228 23246246 ACATTGCTCTGCTATGAGG 57 Novel Rattus norvegicus 81 AABR07040855.1 ENSRNOG00000051669 ENSRNOT00000086698 3 1 1 61 X 112311259 112311277 TAGCCTGTGATGAGGAGAG 58 112311302 112311320 AATACTTGCTCCTTGGGTC 57 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 5S_rRNA ENSRNOG00000034612 ENSRNOT00000052735 1 1 1 60 8 39196750 39196768 TGATCTCGGAAGCTAAGCA 59 39196708 39196727 CCATCTTTCATCTCCCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061914 ENSRNOT00000087774 3 1 1 67 13 51327781 51327799 ATCAGACCTTGCTGCTGAG 60 51327830 51327848 ACTACATCACTGTGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057460.1 ENSRNOG00000014169 ENSRNOT00000018963 1 1 1 60 7 72599699 72599717 CACGACAGTACAAGATCCC 58 72599741 72599759 TTCCCATCCTTCACATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000121.1 ENSRNOG00000061316 ENSRNOT00000087443 1 1 1 80 1 1181388 1198770 GGGACAGAAGATACATACTATATCC 58 1198807 1198826 TGAACACTGTCCTTCATAGC 58 Novel Rattus norvegicus 81 Rn60_20_0050.5 ENSRNOG00000058678 ENSRNOT00000080532 2 1 1 94 20 4964478 4966305 AGTCATGGTACACAGCTGG 59 4964402 4964420 AGGACAAGATCAGCGAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057922 ENSRNOT00000084909 1 1 1 60 8 72774537 72774555 CAGGGAAGATTAGCATGGC 58 72774495 72774514 TAACACCACGAATATCACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000051521 ENSRNOT00000083265 2 1 1 64 8 13870806 13870824 TTTGCTGTGGACATGACCA 60 13870849 13870870 TGCTACTCAAGTAGCATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000060267 ENSRNOT00000080953 3 1 1 60 8 44992815 44992833 AAACATTCGCGGTTTCCAC 60 44992857 44992875 TCAGACATCCAAGGAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070238.2 ENSRNOG00000048192 ENSRNOT00000074538 2 1 1 88 8 60701335 60701354 CGGTCGAGATCAAGAAAGGA 60 60701406 60701429 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 LOC103690903 ENSRNOG00000057926 ENSRNOT00000080612 2 1 1 61 X 130794633 130794651 GACCGAAAGTGAACGTCTC 59 130794590 130794611 CCTCATTTGATTTCTGAAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002779.1 ENSRNOG00000054614 ENSRNOT00000078369 2 1 1 60 1 84793061 84793079 GAGAAATCGGAAGGAGGGT 59 84793019 84793037 TTGCTCTTCCTCTGTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035686 ENSRNOT00000053809 2 1 1 60 1 71911858 71911878 CAGAATGTGCTTGATCTTGTC 58 71911898 71911918 AGTACTATCTAGCCTTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059324 ENSRNOT00000079206 1 1 1 60 8 95883579 95883597 TCACATGTGCATCAGTAGG 57 95883621 95883639 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059324 ENSRNOT00000079206 3 1 1 60 8 95883580 95883598 CACATGTGCATCAGTAGGT 58 95883621 95883640 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037645.1 ENSRNOG00000045689 ENSRNOT00000075081 2 1 1 61 X 26467687 26467706 AAGAAGTTAGACCACAGGGA 58 26467643 26467663 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037878.1 ENSRNOG00000032797 ENSRNOT00000047875 1 1 1 60 X 34714668 34714686 AGAATTGGTTACCCAGCGA 59 34714626 34714645 TCGCTCTATGAGGTCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057842 ENSRNOT00000089663 2 1 1 60 8 18517586 18517608 GGCTTTATAGAATACAGGAGGAC 58 18517626 18517646 GGAATCACAACTACTCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 3 1 1 88 1 214009854 214009874 CACGAGACTAGGAACACCAG 60 214009783 214009801 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056046 ENSRNOT00000080882 2 1 1 60 8 76838279 76838301 GGAACGATACAGAGAAGATTAGC 59 76838241 76838259 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058872 ENSRNOT00000081507 3 1 1 103 8 85366252 85366271 AATGAGGTTTATCTGAGGCG 58 85366334 85366355 AGAGACAAAGTAGTGAGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055321 ENSRNOT00000088929 2 1 1 60 8 75832518 75832537 GAGCACTCGTAAGCATATGG 59 75832557 75832578 TTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070679.1 ENSRNOG00000012758 ENSRNOT00000017015 1 1 1 60 8 80003513 80003531 TCAACAGAGAAATGGCAGG 58 80003471 80003491 ATAGTAATCATCAGCGATCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070679.1 ENSRNOG00000012758 ENSRNOT00000017015 2 1 1 60 8 80003512 80003531 TCAACAGAGAAATGGCAGGA 59 80003471 80003492 ATAGTAATCATCAGCGATCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068975.1 ENSRNOG00000053294 ENSRNOT00000071404 1 1 1 60 8 4118419 4118438 TCAACACCTCCTTTAAGCAC 58 4118456 4118479 CGCCTATCAATCAGATTAAACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117058.1 ENSRNOG00000045729 ENSRNOT00000071773 2 1 1 80 16 81991477 81991495 AAGACCATGTACCAGCCTG 59 81991413 81991434 GTGTTTGTGTTAGGAGGCTG 59 Novel Rattus norvegicus 81 AABR07026424.1 ENSRNOG00000038106 ENSRNOT00000019033 2 1 1 60 16 75874369 75874389 TTATAGAGCGATACAAGGGTG 57 75874329 75874348 ACAAGGAACTTGGTCTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000051755 ENSRNOT00000079071 2 1 1 60 16 62218599 62218617 AAGTGAGGCTGATTGAGCT 59 62218639 62218659 AGGAAGAGAACATGCGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031164.1 ENSRNOG00000055448 ENSRNOT00000089998 3 1 1 81 18 2501695 2511003 CAGCACAAGGCATCTATCC 58 2501632 2501651 CCCAGGATCAGAAGTAAGCA 59 Novel Rattus norvegicus 81 AABR07014820.1 ENSRNOG00000058429 ENSRNOT00000077589 1 1 1 80 14 32673781 32673802 TCTGACTGAGTTTGTCTTTGTG 59 32672281 32673742 ACAATTCAGTTCTTCCCTTGC 59 Novel Rattus norvegicus 81 AABR07014897.2 ENSRNOG00000053882 ENSRNOT00000092190 3 1 1 80 14 36969978 36969997 CTCAAGACCGAGATTGTAGG 58 36970039 36972076 TCCTCCTGATGTACTCTGAG 58 Novel Rattus norvegicus 81 AABR07014897.3 ENSRNOG00000058471 ENSRNOT00000090509 3 1 1 80 14 36981938 36983756 GGATTTATGCAGATCATGGAGTC 60 36983795 36983814 TCCCAAGTATCTGAGTGGTC 59 Novel Rattus norvegicus 81 AABR07031402.1 ENSRNOG00000059577 ENSRNOT00000083984 3 1 1 107 18 12348296 12379462 TACACATGCTGAAGAGGTGG 60 12348208 12348227 GGATTGTTACACAGCAGCAC 60 Novel Rattus norvegicus 81 AABR07000200.1 ENSRNOG00000053182 ENSRNOT00000087887 3 1 1 81 1 4356406 4356424 CTCGAGCTGGACTACTGTG 60 4328371 4356363 GTTCTTTGTCTCTAGACTGCG 59 Novel Rattus norvegicus 81 AABR07029634.1 ENSRNOG00000055975 ENSRNOT00000085296 1 1 1 80 10 41886304 41892509 ATTCATGTACAGAGGCAAAGG 58 41892547 41892569 TGGATATACTCTAAGCTTCAGGG 59 Novel Rattus norvegicus 81 AABR07029634.1 ENSRNOG00000055975 ENSRNOT00000085296 2 1 1 80 10 41886303 41892509 CATTCATGTACAGAGGCAAAGG 60 41892546 41892568 GGATATACTCTAAGCTTCAGGGT 59 Novel Rattus norvegicus 81 AABR07029878.1 ENSRNOG00000057566 ENSRNOT00000089955 1 1 1 82 10 57159320 57159339 TAAAGGACTGTTCGGTCACC 60 57152840 57152858 TGGACTAGGATCTGGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047212.2 ENSRNOG00000061754 ENSRNOT00000077918 2 1 1 80 5 24223106 24225344 CCAGCAATTAATCAGATGCGT 60 24223046 24223064 ACAGTGTCTGCTACTGTCC 59 Novel Rattus norvegicus 81 AABR07060862.1 ENSRNOG00000053679 ENSRNOT00000084701 2 1 1 85 4 97829432 97829450 GTGTTCCACAAATGTGCTG 58 97830320 97830338 CAGCTTTGAGAAGCACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061022.1 ENSRNOG00000053033 ENSRNOT00000083892 1 1 1 60 4 102804959 102804978 TTTATTGGGTTCTTGTGGCT 58 102805112 102805130 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000081876 2 1 2 116 1 14938454 14938474 TGAAGTTTAGAGATGTGGGAG 57 14938549 14945682 TCTAAGTGTCTTGAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07015800.1 ENSRNOG00000054201 ENSRNOT00000081142 2 1 1 80 14 77652159 77668401 GATGAATGAAATTGAGGCTCAG 58 77652100 77652119 TTCACCTTCTGTGTCAATGG 58 Novel Rattus norvegicus 81 AABR07061261.3 ENSRNOG00000060801 ENSRNOT00000081492 2 1 1 122 4 112648993 112649011 CACTACCTCCTACTCCTCC 58 112651390 112651408 GGCCAGTCTATGTAATGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030334.1 ENSRNOG00000054653 ENSRNOT00000090427 2 1 1 87 10 81887762 81887781 AGCTATGATGAAGACCACAC 57 81884210 81887713 CAAATGGGATCCTTTGAGGA 58 Novel Rattus norvegicus 81 AABR07061328.1 ENSRNOG00000056916 ENSRNOT00000089373 1 1 1 80 4 116838803 116838823 GGACCCTCTCCATTTCTACTC 59 116834612 116838764 TTAATGAGATTTGTCTGGGCCT 60 Novel Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 3 1 1 66 14 82288693 82289270 AGTGTAAAGTCCCTCGAGTC 59 82288646 82288664 ATACCTGAGGTCTTGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073038.2 ENSRNOG00000059100 ENSRNOT00000090348 3 1 1 81 4 118329828 118330537 CAATACGCTGGAGACAGAG 58 118330579 118330600 AAGATACAGATTCCATCCTGTG 58 Novel Rattus norvegicus 81 AABR07048321.2 ENSRNOG00000061187 ENSRNOT00000080587 1 1 1 75 5 72995677 72995695 TCTGGAAATCAGGGCAAGG 60 72995835 72995853 CCCAGGTTGGTAGCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000639.1 ENSRNOG00000056218 ENSRNOT00000089617 1 1 1 82 1 20737285 20737303 AACTTCTGGAAGGGAAGCA 59 20735993 20737239 TTCTGACGGCTCCATTCAG 60 Novel Rattus norvegicus 81 AABR07016365.1 ENSRNOG00000055299 ENSRNOT00000088596 1 1 1 81 14 98016025 98017731 CACGACCTTAGCCTTTCTG 58 98015962 98015980 TCACTGAAATTCCACTGCA 57 Novel Rattus norvegicus 81 AABR07016365.1 ENSRNOG00000055299 ENSRNOT00000088596 3 1 1 83 14 98017775 98017795 GGGAATGGTAATGATGGTGTC 59 98016024 98017730 CCAGAAAGGCTAAGGTCGT 59 Novel Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 2 2 2 94 10 93159184 93159764 TCTCCAAGGTGGTAAAGTCG 60 93159819 93159839 GCTTCAGATCTTGAAGTTCCG 59 Novel Rattus norvegicus 81 AABR07048878.2 ENSRNOG00000054839 ENSRNOT00000080480 3 1 1 91 5 95450126 95451413 TTTATCCTCAACCAACTGTGG 58 95450055 95450073 GCTGTAAACTCTGTGGCTC 59 Novel Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000079852 2 1 2 87 10 93205821 93206384 ACTCTGGATGAAGCCACTG 59 93206429 93206453 CTGTGAATTCTTTCTCAGTGATCTC 60 Novel Rattus norvegicus 81 AABR07061652.1 ENSRNOG00000060755 ENSRNOT00000084399 1 1 1 87 4 137968711 137968729 AAACGCAAACTGCCTATGG 59 137966050 137968663 CGTCCTTTCCCACTAATTTCTC 59 Novel Rattus norvegicus 81 AABR07048977.1 ENSRNOG00000055657 ENSRNOT00000089752 3 1 1 88 5 98846536 98846555 TCAGACTTTATCAGGAGCCT 58 98830827 98830851 GCTCTTTCTTGATAGGTTGTATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061847.1 ENSRNOG00000061410 ENSRNOT00000084210 3 1 1 92 4 149184297 149191770 GTGGAACTGCAAACGAGAG 59 149184223 149184244 GTGTCAATAGGTGTGATTCGAG 59 Novel Rattus norvegicus 81 AABR07049035.1 ENSRNOG00000057188 ENSRNOT00000086659 2 1 1 83 5 100882902 100882921 GTTACAGCTTCTCCTCCCAG 60 100872247 100882856 TTCGTGGGAACCTCAAGTC 60 Novel Rattus norvegicus 81 AABR07049134.4 ENSRNOG00000052948 ENSRNOT00000079931 1 1 1 91 5 107289804 107289822 CTGATTGCCTTCTGTCAGC 59 107289877 107291658 CAGAAGTCCAGAGGGAGAG 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000077705 1 1 2 80 4 157752868 157752890 CGAAGACAGATATGAAGTGTACC 59 157752926 157753758 CCAAAGGATATCTTCATTCCTGC 60 Novel Rattus norvegicus 81 AABR07016947.2 ENSRNOG00000061796 ENSRNOT00000086017 2 1 1 84 15 5369443 5374899 CTGTCTCTGCAATTGCAGC 60 5369377 5369397 CCAAGGAAGTTGTTGCTACAG 60 Novel Rattus norvegicus 81 AABR07030739.1 ENSRNOG00000057534 ENSRNOT00000082716 3 1 1 115 10 102604619 102605976 CCTCATCCCTTCAGAGCTG 60 102606055 102606073 TGATCACTGTCATCTGGGC 60 Novel Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 3 1 1 61 10 102746144 102746162 AGCTCTTAACCATGAAGCC 58 102746185 102746311 AGCTGGTATTCAGTTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001061.1 ENSRNOG00000055880 ENSRNOT00000089512 3 1 1 80 1 36589370 36589388 TATGCAGCAAGACACAGGA 59 36589428 36683701 AGAGATGTCCAATACTGTACAGG 60 Novel Rattus norvegicus 81 AABR07017200.1 ENSRNOG00000055488 ENSRNOT00000077112 3 1 1 60 15 17651274 17651296 GAGTAGCCTTACTTCTCATCTCC 60 17659257 17659275 CTGTGTTAGGTGCAGATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017237.2 ENSRNOG00000058267 ENSRNOT00000090141 2 1 1 80 15 19042681 19042700 CCATCAGAAGCTTGGTAGTG 58 19042743 19051606 ATCTCCTGAGAATGCTCCT 58 Novel Rattus norvegicus 81 AABR07017237.1 ENSRNOG00000053868 ENSRNOT00000079102 2 1 1 80 15 19068461 19068479 ACCTTCCAGAATTTGGCCT 59 19068517 19068751 TCTATGATTCTCTGTAATCTCCTGG 60 Novel Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 1 1 1 61 4 170077450 170077468 AGAAAGTACTCGGGAACCC 59 170075684 170077425 AAACGACTGAGAGTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017270.1 ENSRNOG00000057155 ENSRNOT00000084051 3 1 1 80 15 20609659 20609679 CAGAATACCAAGACAATGGCT 58 20609718 20611501 GGACATCTTGAAGATTGGTACG 59 Novel Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 2 1 1 61 11 11653077 11653095 AGGCTGCTGGATTCTACTG 59 11641730 11653052 GTATGATTGGCTCGGTAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 2 1 1 60 5 132777766 132777785 ACATCAAGCTCATGTCACTG 58 132777803 132791315 GCTTCACCTCTAGGTAAATATCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031590.1 ENSRNOG00000059828 ENSRNOT00000089678 1 1 1 114 18 21163972 21167137 CAATGTGTCACCAGGAGTG 59 21167213 21167233 GACATAAATGTTGACAGCACC 58 Novel Rattus norvegicus 81 AABR07017768.5 ENSRNOG00000059044 ENSRNOT00000085722 1 1 1 81 15 30790055 30790297 CTTTGTCTGGATTTAATGTGGC 58 30790338 30790357 TATGAACAGTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07031612.1 ENSRNOG00000051417 ENSRNOT00000091979 3 1 1 80 18 22405240 22405660 GGCTGTTAAACTCAGGTGC 59 22405178 22405197 GAGGGTGGGTCTATTCATCC 59 Novel Rattus norvegicus 81 AABR07001497.2 ENSRNOG00000058069 ENSRNOT00000089344 2 1 1 67 1 47704730 47704748 GTGTGAAGTGAAGAGACCC 58 47725725 47725744 AAAGGTGTCTGCTCTTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001497.2 ENSRNOG00000058069 ENSRNOT00000089344 3 1 1 67 1 47704730 47704748 GTGTGAAGTGAAGAGACCC 58 47725726 47725744 AAAGGTGTCTGCTCTTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001591.1 ENSRNOG00000051938 ENSRNOT00000082276 2 1 1 84 1 53842126 53842311 GTTCATCCAGGAAAGAAGAGC 59 53842357 53842375 TAGCCTTGCTGTGCTAGTG 60 Novel Rattus norvegicus 81 AABR07031952.1 ENSRNOG00000060469 ENSRNOT00000087148 1 1 1 80 18 40397746 40397767 AGGACGAGATGATCTACTACCA 60 40300864 40397705 ATCTTGTCAGTGCCCAGTC 60 Novel Rattus norvegicus 81 AABR07001700.1 ENSRNOG00000055830 ENSRNOT00000089308 1 1 1 80 1 55298848 55436472 GGACCCTAAGGTTGAAGAGG 60 55298787 55298806 TTGAGCAGACACTTGTTGTC 59 Novel Rattus norvegicus 81 AABR07018119.2 ENSRNOG00000056083 ENSRNOT00000081111 1 1 1 80 15 40792181 40792956 GAAGTTTCAAGGACCTGGTG 59 40792120 40792138 GAGGTAAGCAAGTGACGGT 60 Novel Rattus norvegicus 81 AC142360.1 ENSRNOG00000055666 ENSRNOT00000090140 3 1 1 90 6 33561110 33561128 CAAGCAACTTCTGCAGTCC 60 33561180 33567607 GATCATGGGATGGCATTTCTG 60 Novel Rattus norvegicus 81 AABR07001764.1 ENSRNOG00000058989 ENSRNOT00000086654 3 1 1 90 1 56745997 56746015 GAGATGTTGAATGCTGGCA 59 56732610 56745945 CCAGAGCTTCTAGAAGTTGGA 59 Novel Rattus norvegicus 81 AC133821.1 ENSRNOG00000055279 ENSRNOT00000084603 1 1 1 80 5 154372335 154372353 GAATCGAATCTGCTGAGGT 57 154363544 154372291 GGTTCTGTAATCCACTGCT 57 Novel Rattus norvegicus 81 AABR07050283.1 ENSRNOG00000054390 ENSRNOT00000082800 3 1 1 80 5 159210092 159213915 TACATAAAGGGAGCAGCCAG 60 159210031 159210054 TCTCCTGGGTATTATTTAGGTCAG 59 Novel Rattus norvegicus 81 AABR07018226.2 ENSRNOG00000060608 ENSRNOT00000078520 2 1 1 60 15 47938717 47938735 CTTGTCAGCAGACAGTGTC 59 47938556 47938575 GGAATGAAGGTGAGTCAGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AC107505.1 ENSRNOG00000056171 ENSRNOT00000080356 2 1 1 80 18 53458547 53458567 ACCCAGGATTAAGCATTATCC 58 53458608 53518826 CAAGAAACATGCTGTGTCAG 58 Novel Rattus norvegicus 81 AABR07050391.1 ENSRNOG00000055061 ENSRNOT00000082166 2 1 1 73 5 163593752 163593775 GGAGACGTACAACAATCTATTGTC 60 163594672 163594690 CTTGTTCCAAGACCTTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050393.1 ENSRNOG00000051876 ENSRNOT00000087999 1 1 1 103 5 163715237 163715255 CTGAGTCCTCCAGGTACCT 60 163714088 163715170 CATATGGAGACCTGGCAGG 60 Novel Rattus norvegicus 81 AC107274.1 ENSRNOG00000058091 ENSRNOT00000088210 2 1 1 86 18 57896931 57896949 CTCCATAAGAGTCAGCCCG 60 57885901 57896881 TCCAAAGCTATGTTGGCGA 60 Novel Rattus norvegicus 81 AABR07032393.1 ENSRNOG00000055190 ENSRNOT00000080879 2 1 1 90 18 63834728 63838947 TTGGCAGACTGAGGTTGAG 60 63834656 63834674 CTCATCCTTCCAGGGTCTG 59 Novel Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000091112 2 1 2 80 6 44732820 44732838 TTTACCTTGGTTTGCTCCA 57 44732879 44733611 GTTGATATCCTGAATCGTAGGA 57 Novel Rattus norvegicus 81 AABR07063742.1 ENSRNOG00000052993 ENSRNOT00000091474 1 1 1 82 6 45133757 45133775 CATCTCACAGTTTGGGCAC 59 45133948 45133966 CAGTGAGTCCATCTCCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051177.1 ENSRNOG00000058456 ENSRNOT00000084345 1 1 1 80 3 8728 8747 AACTCTTCTGGCAAATCACC 59 8789 10098 TCCTCTTGATGCATTATCGC 58 Novel Rattus norvegicus 81 AABR07032520.3 ENSRNOG00000057598 ENSRNOT00000087490 2 1 1 65 18 69831320 69831338 AAGGTCTTCTCGAATGTGC 58 69830983 69831001 TTCTTATGACAGCGTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051250.1 ENSRNOG00000057532 ENSRNOT00000078344 3 1 1 86 3 3478016 3478036 ATTCAAGGGAGAACTCATCCA 59 3478084 3482193 CCATTTCTCCAGATGGGCA 60 Novel Rattus norvegicus 81 AABR07019085.1 ENSRNOG00000059113 ENSRNOT00000081466 3 1 1 80 15 87433890 87434521 CTATTCCCAAGGTTGCTGTG 59 87433829 87433849 CATACTTCTGGTTCAGAACGG 59 Novel Rattus norvegicus 81 AABR07051255.1 ENSRNOG00000058226 ENSRNOT00000088512 1 1 1 80 3 4153824 4154296 CCTAATGTGGATTGCAGGAC 59 4154339 4154357 CAGGCTGTGTATTTGGCAG 59 Novel Rattus norvegicus 81 AABR07063901.2 ENSRNOG00000055851 ENSRNOT00000083463 3 1 1 60 6 55013261 55013280 CGAGTCTTGGAATCTCTGGA 59 55036122 55036140 TCGTCTTCATGTGAAGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064011.2 ENSRNOG00000051862 ENSRNOT00000079507 2 1 1 81 6 60188019 60188038 CAAGTGGAAGTCTCTGTGAC 58 60186632 60187975 GAGGTGTCTCTGCTACCAG 59 Novel Rattus norvegicus 81 AABR07064011.2 ENSRNOG00000051862 ENSRNOT00000079507 3 1 1 82 6 60188019 60188039 TCAAGTGGAAGTCTCTGTGAC 60 60186632 60187975 GAGGTGTCTCTGCTACCAG 59 Novel Rattus norvegicus 81 AABR07019088.1 ENSRNOG00000057291 ENSRNOT00000084024 1 1 1 80 15 87558248 87558266 CTGTCACTAGCACCTTGCT 60 87558308 87561111 AGATCTTCAGATCAAGGCTCG 60 Novel Rattus norvegicus 81 AABR07019137.1 ENSRNOG00000052807 ENSRNOT00000084183 3 1 1 82 15 90675918 90687062 TCTCCTTCGACAAAGTCCT 58 90687108 90687126 ATGGCTCCTTCCTTACTCG 59 Novel Rattus norvegicus 81 AC126134.1 ENSRNOG00000060916 ENSRNOT00000078700 2 1 1 81 3 5584210 5584231 AACTGGATCTATTCAGAGGAGG 59 5584273 5584608 CAGGTCACAGCTACCTTCC 60 Novel Rattus norvegicus 81 AABR07064139.1 ENSRNOG00000061935 ENSRNOT00000085970 2 1 1 95 6 66180569 66180590 ATGAAACTTAAGCTGAGGTCAC 59 66180644 66181497 CCAAATACAGTGGTGACTGAG 59 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 2 1 1 60 15 97420745 97421803 AAAGATATGTAGGCCTCCTGAG 59 97421821 97421842 TGTAGGGATGTTACTTACTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC132699.2 ENSRNOG00000058830 ENSRNOT00000088688 3 1 1 80 18 79316762 79316781 TTATCCAAACCCATCAGCCT 59 79316821 79317516 TGAACGATATTGATGCATGGAG 59 Novel Rattus norvegicus 81 AABR07002969.1 ENSRNOG00000052945 ENSRNOT00000077404 2 1 1 81 1 90832057 90832075 GGACACTGGAAAGTCAACC 58 90832118 90848614 CTCCTTGGAATGGATCTTTCC 59 Novel Rattus norvegicus 81 AABR07019340.1 ENSRNOG00000053548 ENSRNOT00000086234 1 1 1 80 15 100246793 100246813 CTTTCTTCATCAATAAGGGCG 58 100242957 100246753 TCTTTCCCATCTTCTCTTGTG 58 Novel Rattus norvegicus 81 AABR07051431.1 ENSRNOG00000060585 ENSRNOT00000089483 2 1 1 87 3 10966161 10967067 GCTTTGTGATGCTGTGGAG 60 10967118 10967136 GAAGATCCCAGCTTCCCTG 60 Novel Rattus norvegicus 81 AABR07003001.1 ENSRNOG00000052011 ENSRNOT00000092128 1 1 1 80 1 92233726 92238146 CTCCCTTTGAGTGTATTAGGAC 58 92238187 92238205 ACAGACTGTTTCAGGTCCA 59 Novel Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 2 1 1 60 3 17198624 17198643 TCAGCTTGTGATTTCCTGAC 58 17198663 17208067 TATACTTGTTGTGGATGCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003040.1 ENSRNOG00000055333 ENSRNOT00000079642 3 1 1 61 1 94454024 94454042 TCCTGGAGAATGGTCATCG 59 94451369 94451388 TAGAGGATGCTGCCATTAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 1 1 1 60 6 97335353 97335372 ACATCAGAACCAAGGACCTC 60 97335393 97427414 CCTTTGCATAGTGAAGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064897.1 ENSRNOG00000054542 ENSRNOT00000078197 3 1 1 81 6 99875592 99875894 TGTTATGGGCTGAATGAAGG 58 99875530 99875551 CTGATATTTCTTGTTGCTGTGC 59 Novel Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 3 1 1 89 11 27599556 27599574 AGGAGCAAGAACAGGATCG 60 27599624 27607279 TTGCAGCTTCTCAATTTCTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000079890 2 1 2 82 1 104282220 104282239 ATACAGAGCAAGACTGGCTG 60 104286914 104286934 CATCTTCCTTCATGTGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033757.1 ENSRNOG00000056134 ENSRNOT00000081755 1 1 1 190 11 38881565 38888602 GTGACGTCTTAAGAAAGAAGTCTC 60 38888751 38888769 TTTCCAGTTGTGTCCAGCT 60 Novel Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058,ENSRNOT00000086587 1 2 2 80 6 119137206 119138989 ATTTAAGGCATGCGTGAACC 60 119139031 119139050 TTGAATAACTTACGCAGGCG 59 Novel Rattus norvegicus 81 AABR07003398.1 ENSRNOG00000060326 ENSRNOT00000089731 1 1 1 66 1 108917996 108919137 TGAATAAGGGCATCATCCTG 58 108919163 108919184 GGAATGCAATGAATCATCTTGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07033867.1 ENSRNOG00000057495 ENSRNOT00000077704 1 1 1 83 11 41467576 41468485 CCAAGCTGAAGAATGAATTTCC 58 41468528 41468547 GCCGATAATGCTGAAATTCC 58 Novel Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 3 1 1 62 13 69628240 69628258 CCTTCAGTCTGCAGACTCC 60 69628284 69628509 CCCTGAGAGGCAGTAACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000084814 3 1 2 80 11 44736556 44736576 TGAACTTCAGAGGGACTTCTC 59 44668904 44736515 AAAGAGCCATTGTTATCGGC 59 Novel Rattus norvegicus 81 AABR07052452.1 ENSRNOG00000059803 ENSRNOT00000078191 2 1 1 82 3 54949322 54949342 TAGACAGGGATCCTTACACTG 58 54948370 54949278 ATCTGGAGTCGGAACACTC 59 Novel Rattus norvegicus 81 AABR07052529.1 ENSRNOG00000061018 ENSRNOT00000079761 2 1 1 85 3 60249830 60252014 AGAAGAACACATACAGGTGAG 58 60249765 60249783 ATATGTTTGGCAAGGTGGT 57 Novel Rattus norvegicus 81 AABR07003827.1 ENSRNOG00000055116 ENSRNOT00000083824 2 1 1 80 1 118709876 118709896 CTGTTAACCTTCTGTCATGGG 59 118708069 118709834 TGTACAAAGCCAAGCTGTC 58 Novel Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 1 1 1 60 11 72450097 72450115 AACCTCACGAATCTTGCTG 58 72450137 72450508 TGTAACTCTTCAGATTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 3 1 1 65 3 61124872 61124893 TCCAGTTCAAACATGTGTAACG 60 61124919 61125089 CCTGGAGTTCTTGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000085252 2 1 2 80 6 127196892 127199438 TACAACAGGCAAACACTCC 58 127196830 127196849 AAGTCTCACCCTTCAGAGTC 59 Novel Rattus norvegicus 81 AABR07034550.1 ENSRNOG00000056641 ENSRNOT00000082937 2 1 1 142 11 76634536 76636984 AGAAAGCAGAACATGAGTTCAG 59 76644337 76644359 AGAGCTCCATAGTAGACTTTCTG 59 Novel Rattus norvegicus 81 AABR07052666.1 ENSRNOG00000054083 ENSRNOT00000091511 3 1 1 83 3 68562516 68564863 AGATCAGCAGGATAAATCCAG 57 68564905 68564926 CAATATCTTAGTCTCCTCTGCA 57 Novel Rattus norvegicus 81 AABR07052697.1 ENSRNOG00000056417 ENSRNOT00000090069 3 1 1 80 3 69694827 69694847 TTGGAATAACAGACCTCTGCT 59 69694886 69760828 CATGTGGATCACGTAAGATCAC 59 Novel Rattus norvegicus 81 AABR07021888.1 ENSRNOG00000061007 ENSRNOT00000082330 2 1 1 80 13 96756436 96756456 CTGCAACTCATTCACCATCTG 60 96756495 96757888 TGATTCAGCAAAGACATACTGG 59 Novel Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 2 1 1 68 6 133633008 133642495 ATCCTGGATAGTGAACCGG 59 133632958 133632976 ATTTCTACCCAGGCAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 3 2 2 88 6 133668569 133676830 CTGGAATAGGCCAACATCG 58 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 1 2 2 82 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228242 74228470 TTAGCTTGTTGCACTCGTC 59 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 1 2 2 69 1 131386721 131431805 GGTGATACTACAACCACTGAC 58 131386672 131386690 AATCTCCCAGACCTTGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065593.1 ENSRNOG00000056013 ENSRNOT00000088117 3 1 1 82 6 136000341 136000360 CATAAGCACCAAGTGTCCAC 59 136002098 136002116 TAAGGCTTCTGAGAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 2 1 1 61 13 104140581 104140599 TGCAGAAACACAAGACGTG 59 104140624 104144804 AAATCTTTCGGTCCCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004397.2 ENSRNOG00000054325 ENSRNOT00000077093 3 1 1 87 1 141209969 141209989 TCAAATCCTTCCTGAATCTGG 58 141209717 141209920 CTCTGACTGGCTTCTTCAG 58 Novel Rattus norvegicus 81 AABR07065897.1 ENSRNOG00000055127 ENSRNOT00000077224 1 1 1 80 6 144056452 144062399 TATCAAGACAATGGGTCAGC 58 144062442 144062460 TTCTCTGAAGCACAGTGTG 58 Novel Rattus norvegicus 81 AABR07024652.2 ENSRNOG00000060767 ENSRNOT00000091708 1 1 1 80 16 10321386 10321407 CCCATCAATATAACCAAGACGA 58 10320797 10321350 GAGTAGAATATTGATCGCTCTTCC 59 Novel Rattus norvegicus 81 AABR07024721.1 ENSRNOG00000056527 ENSRNOT00000077902 1 1 1 82 16 12592271 12592289 TGGCCATTTACTCAAAGGG 58 12592082 12592226 GCAGAAACCTTCTCATCCAG 59 Novel Rattus norvegicus 81 AABR07035591.1 ENSRNOG00000052542 ENSRNOT00000036416 3 1 1 83 12 20141317 20141337 TCCTTCCTGGACATAATCTGG 59 20141382 20141695 CTCCTGAGTTCCCAGTGTG 60 Novel Rattus norvegicus 81 AABR07035622.1 ENSRNOG00000051614 ENSRNOT00000082889 1 1 1 80 12 20543464 20543857 TGGAATCTGGGAACTCAGC 59 20543402 20543420 CCTGGACTCCAGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07035722.1 ENSRNOG00000056359 ENSRNOT00000081965 3 1 1 82 12 21417542 21417562 AAACAGTGAGAAACGTGAGAG 59 21417923 21418109 ACACGATGTTATTATCCTTGGG 58 Novel Rattus norvegicus 81 AABR07066841.1 ENSRNOG00000055149 ENSRNOT00000091305 3 1 1 82 9 18919148 18920197 AGCCAACAATTGTTGTCAC 57 18919084 18919103 GAAGCAAGATCCTACTCTGG 58 Novel Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 3 2 3 69 12 22360251 22360269 CAGAATTGAGTGTGGCTGC 60 22360717 22360736 TCTAGGAATCCAGGTCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053787.2 ENSRNOG00000053162 ENSRNOT00000081457 3 1 1 86 3 126176715 126181273 CATGAAGATTCACAGAAAGGTAGAG 60 126181316 126181335 GACTTCCTTGTCCTTTCGGA 60 Novel Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 1 1 1 60 16 24630676 24630695 TCCAAAGGACAATGCTTTGC 60 24630718 24632227 TCCAAGTCTGAGCAGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067005.1 ENSRNOG00000061592 ENSRNOT00000078504 3 1 1 82 9 25871652 25871670 CAGGATTCCCAGAACCCTG 60 25851257 25871606 TGTGCATGATTCCTCAGGG 60 Novel Rattus norvegicus 81 AABR07035864.1 ENSRNOG00000052043 ENSRNOT00000078717 1 1 1 80 12 25952265 25952283 CTTCAGAAATGGGCCTGAC 59 25952325 25965451 TTTGGAATGACCCTTTCTTCC 59 Novel Rattus norvegicus 81 AABR07053885.1 ENSRNOG00000056548 ENSRNOT00000089258 2 1 1 89 3 132532302 132535270 AGTGCAAGGATGATGACAG 58 132532231 132532249 GTCTGTACTCGGAACAAGG 58 Novel Rattus norvegicus 81 AABR07067310.2 ENSRNOG00000057174 ENSRNOT00000080238 3 1 1 80 9 39537680 39537701 CTAATAACCTGGTCGTCATTGC 60 39534102 39537639 TTAATCTGCAGGGTGAGCC 60 Novel Rattus norvegicus 81 AC136867.1 ENSRNOG00000055554 ENSRNOT00000083571 1 1 1 81 12 31299108 31299637 TATCTGAAGCGAGCTGATCC 60 31299681 31299699 CAAGACAGGATGCTCTGGA 59 Novel Rattus norvegicus 81 AABR07025745.1 ENSRNOG00000052681 ENSRNOT00000077550 2 1 1 80 16 47828518 47829395 CAGGCTTGATGTCAGAGGA 59 47828456 47828474 AGAGTAGCCTTCCTTTGCT 58 Novel Rattus norvegicus 81 AABR07005778.1 ENSRNOG00000059566 ENSRNOT00000091912 3 1 1 80 1 198058983 198060590 GAATACTCTGACTCTTGGCAC 59 198060631 198060650 TTCTGTTGTCTTTAGCCTGG 58 Novel Rattus norvegicus 81 AABR07067462.2 ENSRNOG00000054376 ENSRNOT00000081258 3 1 1 67 9 47335588 47335609 AAGGTGTCATCAGACATTACTC 58 47366032 47366050 TCATGAGCAAGACAATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000088948 3 1 2 84 16 59999891 59999909 AAGGTGCATTTCCAAGGAG 58 59999479 59999845 ACCTGGATTTAAACAGTCCAC 58 Novel Rattus norvegicus 81 AABR07036391.1 ENSRNOG00000055489 ENSRNOT00000086158 3 1 1 80 12 41593981 41593999 ATGAAATGCCTGTCTGGAC 58 41594043 41594968 TTGCTCCAAAGAAGCTGTC 58 Novel Rattus norvegicus 81 AABR07005837.1 ENSRNOG00000054067 ENSRNOT00000080548 1 1 1 110 1 202705052 202707119 AGTAACCACAGGAGACCTG 58 202704960 202704980 GGTGAGGATGAGTAAGGAGAG 59 Novel Rattus norvegicus 81 AABR07026049.1 ENSRNOG00000054214 ENSRNOT00000089986 2 1 1 85 16 61221580 61228595 AGATCTATCCTGCAAGACTGTC 60 61228639 61228659 TCACTTACACTGTATCAGCCC 60 Novel Rattus norvegicus 81 AABR07067742.1 ENSRNOG00000061465 ENSRNOT00000089343 1 1 1 80 9 60370915 60372311 GGCTTTCTCCAAATACAAGTCC 60 60372351 60372370 AGTCACAAATGGCTCAAAGG 59 Novel Rattus norvegicus 81 AABR07005950.2 ENSRNOG00000061500 ENSRNOT00000086515 3 1 1 83 1 208521666 208521685 GTGCCTAGAGCTTCATTCAC 59 208521729 208522446 CTCACAGCTGAATGAATTGTG 58 Novel Rattus norvegicus 81 AABR07026143.1 ENSRNOG00000051381 ENSRNOT00000077335 2 1 1 88 16 65369849 65369867 GAGACGGAGTTTGTATCGC 58 65369284 65369303 CGTAATCTACCTCAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036435.1 ENSRNOG00000057583 ENSRNOT00000083739 2 1 1 80 12 43219168 43221954 TCTCACAAGGAAGAGTGTCTC 59 43219108 43219126 TCCATAAGCAGCCAGTACG 60 Novel Rattus norvegicus 81 AABR07036626.1 ENSRNOG00000051412 ENSRNOT00000083327 2 1 1 66 12 50622002 50622020 ACTCCAAGAATCGTCCCTC 59 50623566 50623586 AGGCTGCATATTTCTCTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 2 1 1 84 12 50979106 50979842 TGCTGTGAATATCCCAGGG 59 50979890 50979908 TGGTCTTGAACTCACACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067885.1 ENSRNOG00000052796 ENSRNOT00000090721 1 1 1 80 9 70901795 70942676 TACAAGCATTTGGAGACTCTG 58 70901735 70901753 GTACGGTGCAGAATATCGC 59 Novel Rattus norvegicus 81 AABR07054752.2 ENSRNOG00000056980 ENSRNOT00000086486 2 1 1 80 3 168634408 168634428 TCCTTGGCTCCATAAATTACC 58 168623831 168634366 GAAGAAACTGGGACACCTG 58 Novel Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 3 1 1 60 X 5789762 5824571 TTTCCATGCTTCAACAAGGC 60 5789721 5789740 CATTTGCTCCATTTGCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006097.1 ENSRNOG00000057099 ENSRNOT00000086155 1 1 1 83 1 219755959 219758191 TTCGAGTTCAAGGTCCTCG 60 219755894 219755912 ATGGCTTAGCAGGACTGAC 60 Novel Rattus norvegicus 81 AABR07068046.1 ENSRNOG00000059494 ENSRNOT00000084822 3 1 1 65 9 79450091 79450109 AGAAATTCGTGCTGCATGC 60 79374521 79374539 GAGGGCCCTGAGAAATACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037151.1 ENSRNOG00000055212 ENSRNOT00000082890 3 1 1 87 X 14551943 14551961 TATGGTCTCACCTCTTGCC 59 14552011 14552993 TAACATTGACCTGGAGAGGC 60 Novel Rattus norvegicus 81 AABR07068060.1 ENSRNOG00000052067 ENSRNOT00000077925 3 1 1 81 9 80425919 80427116 GAGGTACAAAGCTTGGGTC 58 80425856 80425875 ACCACTTCTCATTCCTGGAG 59 Novel Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 3 1 1 61 X 21946881 21946899 GTCATCTGCCAAATGGGTC 59 21946379 21946859 GCTGAGAAATCCTGATGAAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022162.2 ENSRNOG00000058314 ENSRNOT00000087172 1 1 1 85 13 110554287 110554305 CATTGTAGCAGCTTTGGGT 59 110554354 110554798 TTATCTATTGGCTGCTGCC 58 Novel Rattus norvegicus 81 AABR07006389.1 ENSRNOG00000058399 ENSRNOT00000086844 2 1 1 81 1 232345411 232345430 AGAACAAGGTTCAAGGATGC 59 232316089 232345370 GTTGTGTAGTTTGTTTCCTGAG 58 Novel Rattus norvegicus 81 AABR07006649.1 ENSRNOG00000058592 ENSRNOT00000086142 1 1 1 80 1 244211726 244211746 TTCAAGATGGAAAGTGGACTG 58 244209304 244211684 ACACATTCCCGTTAACCTG 58 Novel Rattus norvegicus 81 AABR07056200.1 ENSRNOG00000058241 ENSRNOT00000077916 1 1 1 112 7 21203518 21204242 ACTTCACCAGATGGTGCTC 60 21203424 21203442 TGTCTTGCTGCTACTCAGG 59 Novel Rattus norvegicus 81 AABR07040267.1 ENSRNOG00000051827 ENSRNOT00000088177 3 1 1 81 X 96743404 96743423 ATGGCACTAGTGAACTTGAG 58 96726140 96743360 TTTGCATTTCCACCTGAGG 58 Novel Rattus norvegicus 81 AABR07040444.1 ENSRNOG00000058509 ENSRNOT00000089676 2 1 1 80 X 100578842 100616889 AGACTTCTGAGTGCTTATTCTC 58 100616930 100616948 GATGTGAGCACAGTACAGG 58 Novel Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 2 1 1 74 17 5877369 5877387 GGTTCCTACCTGAACGTCC 60 5877423 5889663 TCTCTGAAGACTGCAGATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056422.1 ENSRNOG00000059037 ENSRNOT00000086387 1 1 1 102 7 24672148 24672166 CTATTCCAGGCAGATGGTC 57 24672924 24672942 TACCTGCTCTATGCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056438.1 ENSRNOG00000061363 ENSRNOT00000082493 1 1 1 93 7 25649917 25649935 GAAAGGCGTGGGAATTGTG 60 25574360 25649860 GAACCTCTGAGGATCCACG 60 Novel Rattus norvegicus 81 AABR07027007.1 ENSRNOG00000056763 ENSRNOT00000086596 3 1 1 61 17 10451425 10451443 TATCAAGAGGGAGCAGCAG 59 10450780 10450799 CTGGTTCATCTTCTGGAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056608.1 ENSRNOG00000057371 ENSRNOT00000083969 1 1 1 80 7 32076173 32076194 AACCTCTATTTCTTGTCTGCTC 58 32076235 32082161 CATGGTTTCCTTCCCTCAG 58 Novel Rattus norvegicus 81 AC103018.1 ENSRNOG00000059594 ENSRNOT00000079070 3 1 1 127 1 264470962 264470981 ACCTTGACCTTTGAAGTGCT 60 264471071 264472376 GAAACAAGCTGAAGGCCTG 60 Novel Rattus norvegicus 81 AABR07027240.1 ENSRNOG00000057369 ENSRNOT00000091373 2 1 1 81 17 20827806 20827917 GCATTGAGATCTGCCAAGTG 60 20827744 20827763 CTATTTCTCCCGATTTGGCG 59 Novel Rattus norvegicus 81 AABR07056791.1 ENSRNOG00000055691 ENSRNOT00000081059 2 1 1 120 7 41415435 41416600 TGATCTTAGCACACCACCA 59 41415333 41415354 GCGAAGTCTTTATTGTGATCCT 59 Novel Rattus norvegicus 81 AABR07069227.1 ENSRNOG00000051989 ENSRNOT00000081222 1 1 1 81 8 13524575 13525541 TATTTCAGTTCGTAACGGACC 58 13524514 13524532 TTTCGGAAGGTCTTTGCAC 59 Novel Rattus norvegicus 81 AABR07006904.1 ENSRNOG00000055137 ENSRNOT00000078951 1 1 1 80 1 270475861 270478942 TTCCTCATTCTCTGGCTTCC 60 270475800 270475819 TCCTCCAGGAAAGGAAAGAC 59 Novel Rattus norvegicus 81 AABR07069360.1 ENSRNOG00000057602 ENSRNOT00000078630 3 1 1 86 8 18225369 18226137 CATTGCAGGGAAGACTCAC 59 18226187 18226205 CCTTTCTCTTGCTCTTGGC 59 Novel Rattus norvegicus 81 AABR07043031.2 ENSRNOG00000053855 ENSRNOT00000087349 2 1 1 80 19 18035546 18035564 CTCTGTTGACTTCAGCCTC 58 18035607 18072186 TAAGGAATACCTTGGCTGTG 57 Novel Rattus norvegicus 81 AABR07057146.1 ENSRNOG00000052524 ENSRNOT00000086704 3 1 1 107 7 57736568 57737951 TGTATTCCTGTGAGAGTCCA 58 57736480 57736498 TTCTTCTCTTCCCATTGGC 57 Novel Rattus norvegicus 81 AABR07027394.1 ENSRNOG00000052212 ENSRNOT00000078151 2 1 1 91 17 27991847 27995392 TTAGACAGCACGAGGACTG 59 27991774 27991792 GAGGAGGAAGCTCCTTTCC 60 Novel Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 2 1 1 60 17 28000127 28002994 TACCCAAGCTTGCCTTCTC 60 28000085 28000104 TCTTCTCGGTGAAGAAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057304.1 ENSRNOG00000054802 ENSRNOT00000083324 1 1 1 80 7 65383681 65388116 ATGTAAAGTCAAGGTCAACCTC 58 65383622 65383642 GAATATGCTTATCTCCAGCCA 58 Novel Rattus norvegicus 81 AABR07057304.1 ENSRNOG00000054802 ENSRNOT00000083324 2 1 1 80 7 65383681 65388115 TGTAAAGTCAAGGTCAACCTC 58 65383621 65383641 TGAATATGCTTATCTCCAGCC 58 Novel Rattus norvegicus 81 AC111781.1 ENSRNOG00000053126 ENSRNOT00000090710 3 1 1 60 8 36397143 36397163 CTCTGGTGGAGATGAGAAGAC 60 36397103 36397123 TGAGATAAGGTCTGATAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133739.1 ENSRNOG00000056082 ENSRNOT00000089585 3 1 1 80 8 39289131 39298575 GATTACAGATCCTCTCAACCTC 58 39298616 39298634 TAAAGGTGTGCACCATCAC 58 Novel Rattus norvegicus 81 AABR07043615.1 ENSRNOG00000061386 ENSRNOT00000088621 2 1 1 81 19 32109654 32109673 ACTGATGATGCTTCAGTGCT 60 32107152 32109610 TTCCCTCTTAAAGCTGGGC 60 Novel Rattus norvegicus 81 AABR07027693.1 ENSRNOG00000053010 ENSRNOT00000085851 1 1 1 110 17 40872953 40872973 AGAACAAAGGGAAGAACTGAC 58 40872427 40872445 GACATCATCAGTGGATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028906.1 ENSRNOG00000061539 ENSRNOT00000081812 3 1 1 80 10 1132 2893 CTACTGAAGAACAAGACACGG 59 1072 1093 ACTCATGACAATGATGACATCC 59 Novel Rattus norvegicus 81 AABR07043696.1 ENSRNOG00000052825 ENSRNOT00000090201 2 1 1 85 19 36108351 36109403 CATGTGGAATGTGGAAGGC 59 36109451 36109470 CCTCTCCTCTTCCTTGTTGG 60 Novel Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 1 1 1 76 19 36173582 36173602 GGAGCTAACTACCAAGGAGAG 59 36173640 36174951 GGCTCTTGTTCATGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069987.1 ENSRNOG00000057045 ENSRNOT00000086935 2 1 1 80 8 44367505 44367526 CCAGCAAATCTTAATCCCAGTC 60 44366805 44366823 TTACTCAGAGGAGCCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043711.1 ENSRNOG00000060858 ENSRNOT00000089868 2 1 1 91 19 36256538 36256556 ATAGTGTGCTTCCTCTCCG 59 36242349 36256483 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07043728.1 ENSRNOG00000054835 ENSRNOT00000078112 1 1 1 80 19 36491562 36493426 AACAGATCCATGCAGAACAG 58 36491501 36491519 TGGTGGCCTTTAAGTAGGA 58 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 3 1 1 60 10 1581207 1582495 TGCCTTAGGATTCTTTCTGTG 58 1582514 1582535 TTCCCAGAAAGAGTAGAAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057844.2 ENSRNOG00000061127 ENSRNOT00000091021 1 1 1 80 7 90423030 90423049 TACAGTATGACCCTGGAGGA 59 90422429 90422989 TTCACCATAGCCTCTCATAGC 60 Novel Rattus norvegicus 81 AABR07057848.1 ENSRNOG00000058219 ENSRNOT00000082296 1 1 1 107 7 90747072 90749838 TGCCATCTAATGTGATGCTG 59 90746984 90747005 AATCTAGTGCAGAGATTCTGAG 58 Novel Rattus norvegicus 81 AABR07057907.1 ENSRNOG00000053194 ENSRNOT00000079537 3 1 1 80 7 93611932 93617399 TTCGTACAGATACGGCCAC 60 93611870 93611890 CCTGTTCTTTCCAACCTTCAC 60 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000091294 3 1 3 82 7 97462386 97462407 GAACATGGACTTACTGTTTGGA 59 97397638 97462345 ATCAAACATCTCTGACCTTCC 58 Novel Rattus norvegicus 81 AABR07040908.1 ENSRNOG00000052691 ENSRNOT00000080798 3 1 1 62 X 113800140 113800161 CTGGATACCACATCTGTTTCTC 59 113800929 113800949 CATTTGCTGGTCATACTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070099.1 ENSRNOG00000058295 ENSRNOT00000082176 2 1 1 80 8 52235402 52239797 GATGAGGATGTAGCCTCTCC 59 52235341 52235361 AACCTTCTGCGTTCTACTCTC 60 Novel Rattus norvegicus 81 AABR07041019.1 ENSRNOG00000056360 ENSRNOT00000084894 3 1 1 88 X 117305265 117305284 CATCCAGTAAATGCTGCCTG 59 117305334 117323131 GACTTCGTTCTTTGTGGGTG 60 Novel Rattus norvegicus 81 AABR07070151.1 ENSRNOG00000058918 ENSRNOT00000091893 2 1 1 80 8 54640857 54640876 GATGATTCAGTCTGGTGCTC 59 54639421 54640814 TGTCATAGGAGCTTGGACC 59 Novel Rattus norvegicus 81 AABR07029351.1 ENSRNOG00000055712 ENSRNOT00000084752 3 1 1 108 10 24519556 24521122 AACAACTTCAATGTGTCAGGG 59 24517859 24517877 ATGGGATCAGCTCCATACG 59 Novel Rattus norvegicus 81 AABR07029452.1 ENSRNOG00000058208 ENSRNOT00000088987 3 1 1 80 10 29189639 29189657 CTGGACAGACTCAGTTTCC 58 29190398 29190416 TTTCAGCTTGTCTGTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070161.7 ENSRNOG00000060683 ENSRNOT00000081043 1 1 1 60 8 55539907 55539925 AGAGTTGAAGGGAGTCGTG 59 55538880 55538898 TGTCAAACCATTCGAGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070161.5 ENSRNOG00000059904 ENSRNOT00000082868 2 1 1 90 8 55542906 55543182 ATCAAGGTGAATGCATGGC 59 55542834 55542853 ATGCTTCAGATCCACGAGAG 60 Novel Rattus norvegicus 81 AC091481.1 ENSRNOG00000060442 ENSRNOT00000090899 2 1 1 99 7 107847306 107861531 ACAGCCTGGAGCTTTACAG 60 107861593 107861612 TCAAGGGATGCAGTGTACTC 60 Novel Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 1 2 2 80 10 35049328 35053146 AGACAATGACAGACCTTCCA 59 35049267 35049286 TCTGTTCTCTAAGCCAGGAG 59 Novel Rattus norvegicus 81 AABR07041778.3 ENSRNOG00000058144 ENSRNOT00000081630 2 1 1 80 X 139484190 139484209 GACCTGGAGGAGAAATTGCT 60 139484247 139486455 CAACAGGTACTCTGAAATGTAACC 60 Novel Rattus norvegicus 81 AABR07058383.2 ENSRNOG00000053930 ENSRNOT00000085641 1 1 1 91 7 113338856 113357241 GTAACATGTGAACAGGTCCT 58 113357294 113357313 TTGGCTTACAACTGTTTGTG 57 Novel Rattus norvegicus 81 AC141334.2 ENSRNOG00000052941 ENSRNOT00000080830 2 1 1 80 10 36663511 36663529 TAAATGGCACCACCTACAG 57 36661237 36663467 TTCCAGGACTTGTTCTTCC 57 Novel Rattus norvegicus 81 AABR07007798.1 ENSRNOG00000059761 ENSRNOT00000090072 2 1 1 81 2 28839394 28839415 GAGGAATGACAGTGAACAACTC 59 28834675 28839354 TGCAATGAAGTCCTTCAAGAC 59 Novel Rattus norvegicus 81 AABR07058483.1 ENSRNOG00000052754 ENSRNOT00000084937 2 1 1 113 7 119074818 119074836 CAACCTACTCTGCCACCTC 60 119076762 119076780 CTGATGCATAGTGTGACCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.3 ENSRNOG00000056623 ENSRNOT00000090356 2 1 1 80 10 41833298 41833318 TCAGATTTGCATGTGAGAACC 59 41830914 41833257 GAGAACACCAACTGCTTCTC 59 Novel Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 3 1 1 72 7 126382982 126383582 GTCACTCCAGAGACAAAGC 58 126383618 126383636 CTCATTCTGCTCAGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC141997.1 ENSRNOG00000059136 ENSRNOT00000083119 1 1 1 93 7 126702257 126702277 CAGGACCAAGGAGGAATAGAG 59 126702332 126702506 GTGTCCAGTCTTCCTGGAG 59 Novel Rattus norvegicus 81 AABR07044367.1 ENSRNOG00000052534 ENSRNOT00000081627 2 1 1 61 20 3520157 3524017 AGTACAGTGATACTGAACCCA 58 3524040 3524058 CAGTTCAGCGGTAAAGCAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044415.1 ENSRNOG00000055766 ENSRNOT00000079282 2 1 1 114 20 5261160 5261539 TTTGCAGAGATTCTCCACTG 58 5261616 5261634 TTCTCAGCTTCTCCATTGG 57 Novel Rattus norvegicus 81 AABR07044418.1 ENSRNOG00000058447 ENSRNOT00000082193 2 1 1 102 20 5316903 5316921 CTTTAGGATACCCAGGCCC 59 5316082 5316100 TTGAATCCAGGAAAGCCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007878.1 ENSRNOG00000059628 ENSRNOT00000088094 3 1 1 80 2 32553194 32553212 ATGTCATCAGGCAAAGCAG 59 32530479 32553152 AACTGATTATCAGCTGGTCTG 58 Novel Rattus norvegicus 81 AABR07028172.1 ENSRNOG00000058305 ENSRNOT00000090957 2 1 1 60 17 58678142 58680088 GTTGGGTGTCTTTGTACCAG 59 58678101 58678120 ATCAGCAAACTCAAGTCGGA 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044551.1 ENSRNOG00000054555 ENSRNOT00000090014 1 1 1 106 20 10492182 10493151 GATGGTATCTGATCCCTGC 57 10492094 10492112 ATTTATAGGGCAGAGCAGC 57 Novel Rattus norvegicus 81 AABR07007986.1 ENSRNOG00000053187 ENSRNOT00000078915 1 1 1 80 2 37222296 37223635 ATGTTGCATCACATTCACAC 57 37223675 37223696 GTTGTCTCTGCTTGTTTATACG 58 Novel Rattus norvegicus 81 AABR07044635.1 ENSRNOG00000058683 ENSRNOT00000084854 1 1 1 60 20 14046409 14046428 AACTGTCCCAAAGAGGAAGG 60 14045948 14045966 TTTCTGGCCTTGGTTTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007987.1 ENSRNOG00000056598 ENSRNOT00000089696 3 1 1 81 2 37426239 37427579 CATGTTGCATCACATTCACAC 59 37427619 37427640 GTTGTCTCTGCTTGTTTATACG 58 Novel Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723 2 1 2 82 17 62741959 62741977 GTTTAGCTCCAAGTCACGA 58 62741537 62741916 CAAAGTCACATTTCGAACTCTC 58 Novel Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723,ENSRNOT00000078360 2 2 2 74 17 62814783 62814802 CCTCAGATGACTTTGGATGG 58 62807955 62807973 CTCTTCTCGACTTGAAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 2 1 1 72 20 14912478 14912496 TCATAGCACCTCTGTGCTG 60 14912290 14912445 TACTTCATGCTTCTTGGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC125620.1 ENSRNOG00000054749 ENSRNOT00000077893 2 1 1 80 4 28601976 28603244 TTAAGCAGGTTAGCCAAATCTC 59 28601917 28601935 ATGAAGATGGCCAAGTGGT 59 Novel Rattus norvegicus 81 AC130585.1 ENSRNOG00000052904 ENSRNOT00000082020 3 1 1 82 8 99958629 99960515 GATTGACAGGTTGTTCATACAG 58 99958568 99958588 TTCTTTCTAGGTTCTTGCCTC 58 Novel Rattus norvegicus 81 AABR07028691.2 ENSRNOG00000056948 ENSRNOT00000092155 2 1 1 60 17 81443968 81443989 AAATGCTCAACTCATGACTCTC 59 81442726 81442746 TTTGTAGGGCTATACCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059876.1 ENSRNOG00000057613 ENSRNOT00000085398 3 1 1 87 4 39657226 39657247 GCTCTTGTTTGATTTGTAGACC 58 39654684 39654703 TGCAGTGTTTGAATCACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008142.1 ENSRNOG00000052560 ENSRNOT00000080850 1 1 1 80 2 45616630 45619430 AGTACAAGGCTTTGTGACTG 58 45616569 45616587 GAAGGTGAAATGGTCAGGC 59 Novel Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 3 1 1 75 2 49857572 49857591 AGAGTGGTGGATCTGAAGTG 59 49857628 49908101 ATAATTTCACCATGTCCCGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071335.1 ENSRNOG00000056720 ENSRNOT00000088673 3 1 1 60 8 110111695 110111714 TCTTCAGCTTAGCTTGTGCT 60 110112370 110112388 TCTGTGTCTCAGTCCACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045262.1 ENSRNOG00000059536 ENSRNOT00000086768 3 1 1 80 20 39771901 39778789 ACATTCTCTGAGAATGACTGG 58 39771841 39771861 TCAGTATGTTCAAGGAAGGAC 58 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081572 3 1 3 80 2 59850556 59855175 AACACCAGCTCAGAATTCC 58 59855218 59855237 ATGCTTTCACCTTTGGTCTC 59 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000077266 3 1 3 81 2 59878689 59878828 CTGCATTCAGTAGGCAAAGG 59 59878872 59878890 TGTCTGCTCGGAGAATGAG 59 Novel Rattus norvegicus 81 AABR07071512.1 ENSRNOG00000055306 ENSRNOT00000080248 3 1 1 80 8 119317433 119319362 TCTTGACAAAGTTCACAGAGC 59 119319401 119319422 CAAAGTCTGGTTCACAACAGAG 60 Novel Rattus norvegicus 81 AABR07045403.1 ENSRNOG00000058135 ENSRNOT00000087000 3 1 1 80 20 46420556 46421378 CAGAGCTCTATGAAGCCGA 59 46421419 46421440 CTTCAAATTCATCGTCTTTGCC 59 Novel Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 1 1 1 67 20 48814472 48815822 CAAGTCATAAACAAGCAAGGAC 58 48814426 48814444 TTTCCCTGGATACACCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045510.1 ENSRNOG00000056096 ENSRNOT00000078632 2 1 1 82 20 49773011 49874159 TTCTTATGCAACAGCCCAG 58 49772947 49772965 GAAGTAACAGCACACGGAG 59 Novel Rattus norvegicus 81 LOC103694564 ENSRNOG00000053540 ENSRNOT00000077210 2 1 1 115 Y 2040106 2040326 CGCTGAAGTTCTCTAGATAACAC 59 2040401 2040419 TCACCAGAAGAGTCTCAGC 59 Novel Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 3 1 1 68 19 48573012 48573030 AACCTAACCTACCAAGGCT 58 48569146 48572980 ACCTTTGCTCTTTGCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058699.1 ENSRNOG00000057791 ENSRNOT00000083170 3 1 1 81 7 133648775 133648793 CCATTCACCGTTGTGTTGG 60 133648837 133650868 TCTGGGAACTCTGATTTGGG 60 Novel Rattus norvegicus 81 AABR07071742.2 ENSRNOG00000055201 ENSRNOT00000091761 3 1 1 106 8 128721176 128721194 TTCTTGGTTCACTTCCCTG 57 128721264 128729938 TTTCTTCCAGGTTCTCCAC 57 Novel Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 1 1 1 65 7 135124912 135124930 TAATTGCTTCCAGGTGGCT 59 135124959 135146084 TTTCATTGTCAGGGTGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044079.1 ENSRNOG00000051742 ENSRNOT00000088854 1 1 1 81 19 56403814 56404126 GATTAAAGATTGGGTGGCCTC 59 56403753 56403771 AATCAGGAAGGCAGTGACC 60 Novel Rattus norvegicus 81 AABR07044079.1 ENSRNOG00000051742 ENSRNOT00000088854 3 1 1 82 19 56403815 56404126 GATTAAAGATTGGGTGGCCT 58 56403752 56403770 CAATCAGGAAGGCAGTGAC 59 Novel Rattus norvegicus 81 AABR07071768.1 ENSRNOG00000061710 ENSRNOT00000087726 1 1 1 87 8 130347928 130350237 CCATAGAGTGAAATGGATAAGAGG 59 130350283 130350301 TACAGTGGGAACTGAGGAG 58 Novel Rattus norvegicus 81 AABR07071779.2 ENSRNOG00000061384 ENSRNOT00000080643 1 1 1 80 8 130941344 130941362 ATCATCAGAGTGGGAAAGC 57 130938918 130941301 GAGATCTGCAGCTATCTGAG 57 Novel Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000087127 3 1 2 82 7 137515605 137516068 TTATTGCCAGGCAGAGGAG 60 137515541 137515559 TCCTTTCTGGTGTCTCTGG 59 Novel Rattus norvegicus 81 AABR07071813.1 ENSRNOG00000052222 ENSRNOT00000083653 1 1 1 142 8 131955610 131955628 TTATCAGGACCTGCCAAGG 59 131956557 131956575 CAGACATTCCTAATGGGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 2 1 1 60 7 140008679 140010208 CTCCAGTGTTTCTTCCAGG 58 140010231 140010250 TCTGAGAAAGTCTTCTGCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 1 1 1 60 2 102164297 102164316 CTTAACTGCTGAGCCATCTC 59 102154179 102164275 TGATGCAGAACAAATAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007093.1 ENSRNOG00000052475 ENSRNOT00000081218 3 1 1 80 1 280959053 280959071 ACCTTCCCTACAGACTCAG 58 280957847 280959011 CTCTTTGATCCTCTGTCTGTG 58 Novel Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 2 1 1 60 2 128381474 128381907 TATTAGCCCTCCTATACAGTTGC 60 128381927 128381945 GATCTAGGACAGTCCTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010332.1 ENSRNOG00000058524 ENSRNOT00000090972 2 1 1 80 2 132491797 132492538 GAGGAAAGTCCTATAGCAGGAC 60 132491738 132491759 TGACCTTAGAACGTCTTCAGTC 60 Novel Rattus norvegicus 81 AABR07010385.1 ENSRNOG00000052107 ENSRNOT00000085550 1 1 1 80 2 133881724 133881871 AACTATACCAGCGGCTACAG 59 133881913 133881932 TTATCCAAGCCTCCACACTC 60 Novel Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 2 1 1 72 2 149090443 149096509 GCAGTTTGGATGTCATTCAC 58 149096543 149096562 CCAAATGACAGTGTCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011088.1 ENSRNOG00000054942 ENSRNOT00000083257 2 1 1 80 2 157634335 157635732 TCACGCACATGTAAAGAGTC 58 157635774 157635793 ACAGGAGCTATCATCACAGG 59 Novel Rattus norvegicus 81 AABR07011841.1 ENSRNOG00000056204 ENSRNOT00000084889 2 1 1 81 2 171693072 171693093 GTGCTGGATATGAGATGAACAC 59 171693135 171693560 GCCTTTGCATAAACCTGGA 58 Novel Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 1 1 1 160 2 177343807 177343825 ATACCTGGAGAGTTGGCAC 59 177343232 177343684 TCTTTGTCTCAGGAATCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014323.1 ENSRNOG00000059599 ENSRNOT00000077076 2 1 1 61 14 9529126 9529144 GAATCCAAGGCAACCACAG 59 9532393 9532412 CCTTGTGCAAGTAAGAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.1 ENSRNOG00000053048 ENSRNOT00000079741 3 1 1 148 2 204033589 204033607 GATGAAATCAGTTCGGGCC 59 204033718 204033842 GTTTAGATCAGGGCATGCTG 59 Novel Rattus norvegicus 81 AABR07012774.1 ENSRNOG00000052078 ENSRNOT00000079825 1 1 1 80 2 207845642 207845895 TGAGAAGATCTCAGCTCCC 58 207845939 207845957 GGTTGTCTGGTGTTCAGTG 59 Novel Rattus norvegicus 81 AABR07012774.2 ENSRNOG00000055255 ENSRNOT00000079542 3 1 1 81 2 207870616 207870634 ACAAGAACAGCAACAGCAG 59 207870678 207871613 TGGGATGACATATCAGGGAG 58 Novel Rattus norvegicus 81 AABR07012943.1 ENSRNOG00000057573 ENSRNOT00000091861 1 1 1 80 2 216061622 216062300 CACTCAACTGTCTGCATAACTC 59 216062338 216062359 ACAGCAGTTCAAAGAAAGTGAC 60 Novel Rattus norvegicus 81 AABR07013023.1 ENSRNOG00000052101 ENSRNOT00000081752 1 1 1 96 2 219059811 219059829 GAAGGTTAAGCTGGCTGTG 59 219065141 219065159 ATGCTGTGAATCACTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013073.3 ENSRNOG00000060752 ENSRNOT00000084954 3 1 1 64 2 221339628 221339649 CGAGTTTCTTCATATGTTCTGC 58 221334945 221334963 AGCTGAAGACGGTAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013453.1 ENSRNOG00000054662 ENSRNOT00000087460 3 1 1 80 2 237975013 237976382 ACTTCCTCTGGGTGAACTG 59 237976426 237976444 ATGGGCGATTTACTTGAGC 58 Novel Rattus norvegicus 81 AABR07013676.2 ENSRNOG00000057293 ENSRNOT00000087350 2 1 1 97 2 249528199 249529897 GTAATACTAACTACTGATGGCGTC 59 249528125 249528143 CCAAACTGCTCCAACTTGG 59 Novel Rattus norvegicus 81 AABR07013750.1 ENSRNOG00000052596 ENSRNOT00000091976 3 1 1 88 2 254549728 254549748 AATTCCTCTAATGAGGCACAC 58 254549798 254551321 TCAACTTGACCAGGTTCAG 57 Novel Rattus norvegicus 81 ENSRNOG00000059050 ENSRNOT00000088535 3 1 1 80 1 42969881 42969906 GACTTCCTTGGGAATTTAGGTG 59 42969822 42969840 CACCCTGTTCTTCATGCTC 59 Novel Rattus norvegicus 81 AABR07063544.1 ENSRNOG00000005811 ENSRNOT00000007637 2 1 1 86 6 34554737 34554756 GCTTAGATAAGAAGGTCGGG 58 34554668 34554687 CCTCGATAGTGAGGATTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054919 ENSRNOT00000091314 2 1 1 60 1 61974153 61974175 GATACAGAGAAGATTAGCATGGC 59 61974115 61974134 GAATGCTTCACGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055985 ENSRNOT00000085013 2 1 1 60 2 254002019 254002043 CATAGAGAAGATTAGTATGGTCCCT 59 254001983 254002003 TGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055985 ENSRNOT00000085013 3 1 1 60 2 254002018 254002042 ATAGAGAAGATTAGTATGGTCCCTG 59 254001982 254002003 ATGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058771 ENSRNOT00000087786 1 1 1 60 4 107754712 107754734 GGAACGATACAGAGAAGATTAGC 59 107754674 107754692 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058274 ENSRNOT00000083845 3 1 1 60 4 121506917 121506936 TATCTGAGTAGCTGCACTCC 59 121506956 121506977 CAAGCTTCCTTCTTCTATGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000076975,ENSRNOT00000080556 3 2 2 80 13 49005512 49006084 TGGCCCAATACTACCTTCC 59 49006128 49006146 ACAGATTCACAGGGAGACG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054060 ENSRNOT00000083440 3 1 1 60 1 249097666 249097686 CCAAAGCTGTGAATCTATGGC 60 249097707 249097726 TAGGAAGATCATCCTTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 1 1 1 61 7 7291085 7291103 TTTGTTGTGATGCAGCTCC 59 7291127 7291150 CATCTGTTCTATCAACCATGTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 1 2 2 80 5 77341447 77341468 GAGTGCAGGGAACTATATTTGG 59 77246989 77341408 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546 1 1 5 80 6 115155624 115155645 CATGAAGAAATGATAGGAGGCA 58 115144838 115155584 GTGGAACCCAAAGTGTACTC 59 Novel Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 3 1 1 85 2 198601738 198601756 AGAGCTCAGAGCAAACCAG 60 198601806 198601824 CCTGTGGTAAGGAATCCGG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000074349 3 1 4 83 5 77723818 77724184 GCTCTATGGCAGAACAAAGG 59 77723754 77723772 TCCCTAGTGATTCCATGCG 59 Novel Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 1 2 2 80 4 7150069 7150089 GTTCCCTGATTATCCAGACGA 59 7150131 7150554 TCTTGTCTCACCTGCTCTG 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000071395 2 1 2 91 5 77315217 77315930 TTTGTTGAGCATGACGGAG 59 77315144 77315164 CCGTTCTTGACATTAACAAGG 58 Novel Rattus norvegicus 81 AABR07056131.1 ENSRNOG00000051596 ENSRNOT00000088383 1 1 1 84 7 20462798 20462819 CATCAAATTCTGAGAGTTTCCC 58 20462861 20467410 GGAAGGAAGATTTCTTGATCCA 58 Novel Rattus norvegicus 81 AABR07056131.1 ENSRNOG00000051596 ENSRNOT00000088383 2 1 1 85 7 20462798 20462819 CATCAAATTCTGAGAGTTTCCC 58 20462862 20467411 AGGAAGGAAGATTTCTTGATCC 58 Novel Rattus norvegicus 81 AC135026.1 ENSRNOG00000054620 ENSRNOT00000083884 2 1 1 114 1 48880210 48891017 AAAGAATGGAGGATGTATGCAC 59 48880117 48880135 GTCAAACCAGTGATCACCC 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 1 2 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164332 75167554 CCAGAATAAGAGCCTTCATCC 58 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067 2 1 3 108 13 75158917 75164200 CCATGTGTTTACAGAAATCCTC 58 75164269 75164287 AGACCAGAAAGGGTCAGAG 58 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000077423 1 1 4 80 1 49425806 49425826 CACATCAGTAGCTTTGAACCT 58 49293493 49425765 CTATCCAAACTGACATCCGT 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000051460 ENSRNOT00000088709 3 1 1 60 14 13670694 13670716 GATACAGAGAAGATTAGCATGGC 59 13670736 13670754 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065291.1 ENSRNOG00000049801 ENSRNOT00000073939 3 1 1 88 6 119627446 119627467 TGAAGGACTTCAAGAAAGACAC 59 119627511 119627539 TCTGTCTATGTCTCTATCTTCTGC 59 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000083678 2 1 3 81 5 164954160 164954178 TTTGGATAAGGAACACCGC 58 164954221 164954884 GGAGTCTGAATTGATGGACAG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000058788 ENSRNOT00000086895 1 1 1 62 14 86964960 86964978 AATGAGGTTTATCCGAGGC 57 86964916 86964934 TACTGACTGGATTCTGGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016556.1 ENSRNOG00000036373 ENSRNOT00000054492 2 1 1 63 14 103358312 103358332 AAGTAGCTGAATCAGAGTGCT 59 103358269 103358287 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061462 ENSRNOT00000079397 3 1 1 61 2 169730532 169730552 CGATACAGAGAAGATTAGCGT 58 169730575 169730593 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0829.1 ENSRNOG00000051025 ENSRNOT00000075859 1 1 1 83 13 77892351 77892369 AGAAACACTTTGCTCGGGA 60 77892413 77903732 ACAGCTGAACCTCAGTATACAG 60 Novel Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 1 1 1 102 2 257462434 257462452 TGACAAGGCCAACAAACAC 59 257462519 257462537 AGTTCCAGAAGCTAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 2 1 1 71 1 92088293 92088311 GCCAAGAAGCAAGATTCAG 57 92088238 92088257 TGACCTTGACTGGGTAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000031927 1 1 3 80 X 73506270 73506294 TCTAGACTTATTCAGAACCAGAGAC 60 73506330 73508508 CTCCAGGTCTTCCAAATTCTG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061141 ENSRNOT00000083813 1 1 1 60 5 125187553 125187572 GGGTTAGAATAGGAGCTTGC 58 125187595 125187613 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061141 ENSRNOT00000083813 2 1 1 60 5 125187554 125187573 GGTTAGAATAGGAGCTTGCT 57 125187596 125187614 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017198.2 ENSRNOG00000056859 ENSRNOT00000077333 3 1 1 61 15 17330205 17330224 GAGTCTGGAATGGGATTTGG 58 17330248 17330266 CAACATCAGCATCACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056973 ENSRNOT00000078426 1 1 1 60 3 4094131 4094150 GAGGCTATGTCTACGCTCAG 60 4094090 4094111 TGTCAGGCTACAAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 1 2 2 80 4 164047280 164047299 GGATTGGATGTCAACAAGCC 60 164042718 164047240 GAAGGAACTTCAGTTCATCCTC 59 Novel Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 3 1 1 62 18 25313905 25313923 ATGGGAGGAATCAAGGTGC 60 25313857 25313875 GGAGCCAATGGTATTGGGT 60 Novel DesignNoJunction Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000065044 3 1 2 116 20 4559407 4560662 CTGCAAACCTGTTCGATGTC 60 4559310 4559329 GTGAAACCATGCTCACACTC 60 Novel Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 3 1 1 74 20 628724 628746 ATCTCTGCTATACCACTTCTACC 59 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 1 2 2 117 10 88568176 88568195 CAACATCCAGCTGAACTCTG 59 88567743 88568096 TATGGAATACCCTGGCCCT 60 Novel Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 3 1 1 60 11 11653069 11653089 CTGGATTCTACTGATCCAGCT 59 11641725 11641744 GTCTTGTATGATTGGCTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 2 1 1 111 15 40480801 40480823 CCATAAGAGATGCATACTTCCCT 60 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 1 1 1 60 18 50133432 50133451 AGCCTTGTATCCAGAGTCAC 59 50093996 50094014 CTGTCAAAGAAGTCAGCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 1 1 1 82 1 56541414 56541432 ATAGAAAGCAGATGCGCTC 58 56539436 56539457 GAGGAGTAGGAATTTAAAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 2 1 1 61 6 45023520 45023538 ATTGGCAGAGACACATGGA 59 45024510 45024528 GGCCTGGATAGTGACTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 3 1 1 67 18 79312133 79312151 GGATGGATGGGTGTCTCAG 60 79311559 79311583 GAAGTCAAATCCTATTCTTGTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 1 1 1 77 6 97335375 97335393 TGGTGCTTTCAGGAGAAGG 60 97427433 97427453 CCTTTCTCCTCTGTAGATCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 3 1 1 60 3 33949831 33949855 GTAGTTAAATGAAGTGTACCCAGAG 59 33949872 33949891 TTTGCTCTCCCAAGAAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 3 1 1 65 3 36633392 36633411 ACCGTGACTTTCCATAATGC 59 36581246 36581264 CCAAGGGTTTAACCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 3 3 3 80 6 125287309 125289661 ATATGACCGCCACAATTGC 59 125287247 125287267 CTGTCATCAATCCACTTCGTC 59 Novel Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 1 1 1 60 3 66080130 66080149 TGACAAATCTCCACAACTGC 59 66075096 66075118 CCTCATACAGAGTATGTAGTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 1 1 1 60 13 104140340 104140361 GAAGAAATAACCCAGCTTTCAC 58 104140518 104140536 TTGGAAAGCACCAAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 2 1 1 60 12 6602696 6602715 TGATCCTCTATGGCGATGAC 59 6592710 6592730 TCACCTACAGATGTCAGAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000078486 3 1 2 85 3 108641405 108641424 AGACTCTTGAGTTCCTTCCT 58 108640271 108641358 TGTTCATTTGCTTCCCTGAG 59 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000092040 2 1 2 118 12 22370363 22370381 CCAGAGATGTACTTGCACG 58 22370463 22371365 ACTGCACAGTGATTTCAGC 59 Novel Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 2 1 1 60 12 22528087 22528106 AAGAAAGCGACCATGAACTG 59 22512561 22512580 TCTCAACTTCTGTTGACCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 3 1 1 71 12 22601937 22601955 TGTTCTGCCAATCCATCAG 58 22604851 22604869 CTCCTGGCTTCTTGAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 1 1 1 60 9 29366498 29366516 CTTTATGCTGATGAGGGCA 58 29403357 29403375 TACAAGATGGCCTCTTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 1 2 3 63 3 142297286 142297304 AACAGCTTCTGGTACCCAG 59 142293157 142293176 CAAACTGGAAGGTACATCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 1 1 1 88 16 58493620 58493639 CATGGAGCAGAGATATGGTG 58 58494306 58494326 CCAGCTTTCTTAGATGATTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 2 1 1 97 16 86537917 86537935 TGAGCAAAGGTAGGAGGTG 59 86538816 86538834 GAGTCAGCTTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 3 2 2 84 8 4890737 4896594 TTTAGGTATTTGGCTGGTCTG 58 4890673 4890691 ATCTCCATAGGCTAGCAGC 59 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000077575 1 1 3 148 8 5173952 5175612 AGCAGTATGAAGAAGATACCAG 58 5171955 5171973 GCTTTGCAAGACTCATGGA 59 Novel Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000080819 3 1 2 94 17 19056923 19056941 TTCATTGTCAACCGGAGCT 60 19056997 19057261 TTCTTTGTGACTGAGTTTGGC 59 Novel Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 3 1 1 66 17 28002999 28003017 GAACTTCCAAGGCCAACTC 59 28000102 28000125 CAGGCAGCATTTCTTAGTATACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 3 1 1 71 1 274175054 274175072 CAAAGGAAAGGCAAGCAGG 60 274172639 274172657 AATGCTTATGCAGAAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 2 1 1 60 7 62839111 62839130 AAAGCGCTTACTCCAAACAG 59 62839873 62839893 TCATAGAGGTAGGAGAGGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 2 2 2 81 10 107629 109350 TCGACAAGACAATCTGCCA 59 109395 109413 TTCAAATCCTGCACCAAGG 58 Novel Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 1 2 2 80 10 35049328 35053146 AGACAATGACAGACCTTCCA 59 35049267 35049286 TCTGTTCTCTAAGCCAGGAG 59 Novel Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000090459 1 1 2 93 10 35053547 35053565 CAGAACCATACCTCAGCCC 60 35053223 35053490 CATCAGTACTGAGCCTGCA 60 Novel Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 2 1 1 61 20 38137072 38137094 CTTCTGACATCCATTCTATCCAG 59 38140137 38140155 TCAGAGGGCAGTATGAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 3 1 1 63 2 69809757 69809777 CCCAAATCTTCACTGAAACAG 58 69803548 69803567 ATTTCTGTGCCTTCATCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 2 1 1 60 19 48572976 48572994 GTTTCTGCTTCCTGCAGAG 59 48569118 48569137 TTGACTGAGGAAGTCATCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 1 1 1 60 2 128381466 128381485 TGCCATTCTATTAGCCCTCC 59 128381918 128381937 ACAGTCCTGGCTTTCTATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 3 1 1 60 2 133028532 133028551 TCTGCAGGAAAGTCCTACAG 59 133026418 133026441 CATCCTCTACCACTTATATGTGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 3 1 1 61 2 183343970 183343988 CTGTAAAGCAGGGAGAGCT 59 183343825 183343843 CCCAGCCCAGGTATAACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 2 1 1 78 2 206162761 206162779 GCACCAAGAAGGATTTCCC 59 206157105 206157123 CTTTCCTTCTGGTCCTGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 3 1 1 65 2 222721567 222721586 GGGTAACATGTGGCTATTGG 59 222783273 222783291 TCGATCAGTATGTGGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd1 ENSRNOG00000030644 ENSRNOT00000047550 3 1 1 60 MT 2756 2775 TCCTAACACTCCTAATCCCA 57 2797 2816 TTCCGTTCTACTAGGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-cox3 ENSRNOG00000030700 ENSRNOT00000049683 2 1 1 60 MT 8621 8641 ACCATATAGTAAACCCAAGCC 58 8660 8681 GTAAGTAGAAGAGCTGATAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd3 ENSRNOG00000033615 ENSRNOT00000041241 2 1 1 60 MT 9641 9660 TATTCGACCTAGAAATCGCC 57 9680 9701 GTATTGGTTGTTTGAATCGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd3 ENSRNOG00000033615 ENSRNOT00000041241 3 1 1 60 MT 9714 9735 AGCAACTGCCTTTATTCTAGTC 59 9753 9774 TTGTGTTCATTCGTAGCTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde5a ENSRNOG00000014443 ENSRNOT00000019638 3 1 1 80 2 226926213 226942394 AGATGCCTATGAGGATCCC 58 226942435 226942456 GGCATACAAAGGATACTTTGTG 58 NA Rattus norvegicus 81 Nphp4 ENSRNOG00000011967 ENSRNOT00000066623 2 1 1 80 5 169665724 169670939 ATTAAGCAGGGAATCCTAGAC 57 169670981 169670999 ATGTTTGTAGGTGACGTCG 58 NA Rattus norvegicus 81 Tinf2 ENSRNOG00000020189 ENSRNOT00000027362 3 1 1 81 15 34361763 34362183 CAAGAAACCAGTGCTATCCC 59 34361701 34361720 TTCTTCCTCATCAGAGTCCA 58 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 3 2 3 86 15 35032721 35032739 TAAGGGTCATCTGTGGTGG 59 35032786 35033324 GGATGACTGTGATTTCTCTTCC 59 NA Rattus norvegicus 81 Actrt1 ENSRNOG00000003456 ENSRNOT00000004591 2 1 1 60 X 133228006 133228027 GCATGTATGACGGTTTATACCT 58 133228046 133228066 TCCCATCTAGTTACCAGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910420 ENSRNOG00000048940 ENSRNOT00000072457 2 1 1 60 20 753704 753725 CATTATCACCATCACAACACTG 58 753665 753689 CCTCAGAAAGTAATACATTGGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgcg ENSRNOG00000014603 ENSRNOT00000019639 1 1 1 80 15 41552383 41556143 CCATTTCAAGACCTTAGGTTGG 59 41552324 41552342 ACGAGCTTCAATGTGAACG 59 NA Rattus norvegicus 81 Cldn19 ENSRNOG00000007922 ENSRNOT00000047151 2 1 1 80 5 138302984 138303002 CTCATGGTACGCTACCCTG 60 138303044 138304563 GCTGGACCAAATTCATACCTG 59 NA Rattus norvegicus 81 Ebpl ENSRNOG00000014659 ENSRNOT00000020036 3 1 1 84 15 41668832 41669521 GGAGAAGTATTACAGGCATTTCG 60 41668770 41668788 CCACTCAGGGAAGAAGGTC 59 NA Rattus norvegicus 81 Btbd19 ENSRNOG00000042163 ENSRNOT00000067675 3 1 1 87 5 135993330 135994575 CCCGGTACAGTGATATTTGC 59 135993262 135993280 AAGTTACATCTGCAGGCCA 59 NA Rattus norvegicus 81 Olr1139 ENSRNOG00000048018 ENSRNOT00000035560 1 1 1 60 8 19179832 19179853 AACCTCATCATTATCTTGGCTG 59 19179793 19179814 AGAAGTACATTGGAGTATGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syap1 ENSRNOG00000004304 ENSRNOT00000006584 1 1 1 80 X 33559676 33560134 AAATCAAGAGGACGAAGAGGA 59 33560175 33560194 AAGTTACAGGCATCAAAGGC 59 NA Rattus norvegicus 81 Hcn4 ENSRNOG00000009450 ENSRNOT00000012644 2 1 1 80 8 63634271 63634289 CCAGGGCAAGATGTTTGAC 59 63634327 63634459 CAGTTAAAGTTGATGATCTCCTCTC 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 3 2 2 80 2 143926239 143926721 GTGTTTGATGACACTTTGCT 57 143926178 143926199 CATTACTACGGTTAAGGTTCCT 58 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943,ENSRNOT00000064712 1 2 2 80 5 138359708 138360755 CTTCCACAGGGTCATAAAGG 58 138359276 138359294 CGGTAAATACTGGCGACTC 58 NA Rattus norvegicus 81 Htr1f ENSRNOG00000000716 ENSRNOT00000000907 3 1 1 60 11 1982802 1982821 AGTCGGATGATAAAGGAGGA 58 1982761 1982779 TGCTCTTCTCACCACTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912529 ENSRNOG00000049347 ENSRNOT00000075742 1 1 1 60 5 137565463 137565481 TTTCTGCCTTCCTTAACCC 57 137565505 137565523 AAAGCCCTCTTCACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgn1 ENSRNOG00000048226 ENSRNOT00000075126 3 1 1 100 11 39482929 39485177 CGGGAAAGGATAAAGCATCAG 59 39485237 39485257 CAGATCTGTAGTTTGCTGGTC 59 NA Rattus norvegicus 81 Lhfpl5 ENSRNOG00000022283 ENSRNOT00000036999 3 1 1 86 20 5819727 5819745 TCTCCTTCTTGGCTTTCGT 59 5819795 5822840 TTCAGACTTCCTCGTTCCC 59 NA Rattus norvegicus 81 Lao1 ENSRNOG00000007232 ENSRNOT00000009520 3 1 1 80 5 138014017 138014035 GAAACAAGGAGGAAGGCTG 59 138014075 138018042 GGATATAGGTGTGGATTATCCTG 58 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962,ENSRNOT00000014820 3 2 2 80 15 38165491 38165510 TGCTCTTCATCACCTTTGTG 59 38151287 38165451 CTGTTCTGGAAACAGTACTCAC 59 NA Rattus norvegicus 81 Dcps ENSRNOG00000009993 ENSRNOT00000013763 1 1 1 80 8 36370288 36374479 CATGGGAAGGTGAATGAGGA 60 36370227 36370247 TACCTGAAACGGTGTCTTCTC 60 NA Rattus norvegicus 81 RGD1560997 ENSRNOG00000032132 ENSRNOT00000051805 3 1 1 60 X 37026643 37026662 GGAAGAAGTCTTACACCACC 58 37026685 37026703 GCCAACTTGACCTTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk1a ENSRNOG00000001662 ENSRNOT00000050342 1 1 1 83 11 34922269 34922287 ACATAAGTGACCAGCAGGT 59 34922334 34926993 CAATGTCAGGCATCACCTG 59 NA Rattus norvegicus 81 Srpr ENSRNOG00000010543 ENSRNOT00000015177 1 1 1 80 8 36411527 36411548 AACAACTCTTTCACTCATGAGG 59 36411589 36411879 AAAGCCAACCACAAACACC 60 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 3 2 2 80 X 31154942 31157338 TGTCAATGACCTTAGTGAATCC 58 31157378 31157397 TCTTTGTCATAACCGTGCAG 59 NA Rattus norvegicus 81 Zfp300 ENSRNOG00000046469 ENSRNOT00000072087 1 1 1 84 X 908565 909170 AATTGCACAGAAGATGGGC 59 909216 909236 CGGATATAGTCTGTTCCAGGG 60 NA Rattus norvegicus 81 AABR07069837.1 ENSRNOG00000049187 ENSRNOT00000075103 3 1 1 80 8 41147477 41147497 CTTGCACAAGAACGATAAGGA 59 41146348 41147436 CTTGCACTTTCTGAGACCAG 59 NA Rattus norvegicus 81 LOC100910163 ENSRNOG00000047977 ENSRNOT00000074449 2 1 1 60 16 72402048 72402066 AACATAGACCAGGAGTCCC 58 72402090 72402108 CCTCTGCCTTCTTGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 3 2 2 80 2 123814237 123820247 GGAAGATCACTGAAAGTTCTCC 59 123820287 123820306 ATCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 LOC684395 ENSRNOG00000048319 ENSRNOT00000072574 3 1 1 131 8 107107388 107129522 GCTTCCAGGAAAGTCTCTG 58 107129616 107129635 CTGTTATGGAGGAAAGGCTC 58 NA Rattus norvegicus 81 AABR07012291.1 ENSRNOG00000029760 ENSRNOT00000064950 3 1 1 233 2 192381697 192381715 TGTCTTACCAACAGCAGCA 60 192305622 192305640 GTTGGTATGAGGGAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mx1 ENSRNOG00000001959 ENSRNOT00000039876 3 1 1 80 11 37892418 37894376 ATGCCTACTACCAGGAGTG 58 37892356 37892375 CAAATGTTTGCAGGATGGAG 58 NA Rattus norvegicus 81 AABR07002418.1 ENSRNOG00000048238 ENSRNOT00000072649 2 1 1 81 1 73423037 73423168 CCTGGCTTATCTCAAGCCT 59 73423211 73423231 TTGGGTTCCAAAGATACAAGG 58 NA Rattus norvegicus 81 Rnf17 ENSRNOG00000008059 ENSRNOT00000010795 1 1 1 80 15 36742247 36744065 TATGCTTCCTCTGTGGCTC 59 36744109 36744127 CAAGGACATGTGAACTGGG 59 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917,ENSRNOT00000080185,ENSRNOT00000065065 2 3 3 80 2 188409798 188411918 CCGGATCAAAGAGGTCCTG 60 188409736 188409754 TCCTGGAAGGTCTGTACCA 60 NA Rattus norvegicus 81 RGD1565566 ENSRNOG00000042547 ENSRNOT00000068694 3 1 1 60 1 61553597 61553617 AGAAGATGAAGAAGTCATCCG 58 61553638 61553657 GGTGACTTCTCAAACACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc14 ENSRNOG00000029049 ENSRNOT00000043521 3 1 1 80 1 46578308 46578327 TTTCACCTGCAAGATCTTCC 58 46578368 46605535 TGGTGATCAAACTGTTCTACG 58 NA Rattus norvegicus 81 Tulp1 ENSRNOG00000000507 ENSRNOT00000066897 3 1 1 80 20 7937670 7937690 GGCCAATTATCTCATCTCCAG 58 7935484 7937628 AGGTTAGACCTCAGCTTCC 58 NA Rattus norvegicus 81 Cpox ENSRNOG00000001654 ENSRNOT00000002257 1 1 1 80 11 44044410 44044428 AAAGCACTGTGATGACTCC 58 44041800 44044369 AGATTAAACTCTACATACCGCC 58 NA Rattus norvegicus 81 Fgg ENSRNOG00000025074 ENSRNOT00000034521 3 1 1 82 2 181987798 181987816 CACAGAAGCCAAGGAACTG 59 181987862 181987971 CACCCTCTATCATACCCGG 59 NA Rattus norvegicus 81 Olr119 ENSRNOG00000033350 ENSRNOT00000044641 2 1 1 60 1 168795205 168795226 CGGATCTTGGAGTAACATTGAC 59 168795166 168795187 TGATTTAACCACAGTACACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453,ENSRNOT00000011317 3 2 2 80 X 1755554 1755574 AGAAGTATGGTATCCCTGAGC 59 1755417 1755512 GTTCAAAGTCCACAGAGGC 59 NA Rattus norvegicus 81 Nmb ENSRNOG00000011011 ENSRNOT00000014639 3 1 1 81 1 142723132 142723150 TGATCTGCTCAGGATCCTC 58 142721519 142723087 CCTCCTGTACTGGATTGGG 59 NA Rattus norvegicus 81 Olr1260 ENSRNOG00000046762 ENSRNOT00000075251 3 1 1 60 3 158851774 158851793 CATTCTCACATCAATGGCCT 58 158851813 158851834 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr507 ENSRNOG00000055270 ENSRNOT00000090035 2 1 1 60 3 73800647 73800665 CAATGACAAAGTGGCTTCC 57 73800605 73800626 GATCAAGGGATTCAACATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqgap1 ENSRNOG00000012002 ENSRNOT00000018021 1 1 1 80 1 142573792 142573812 GAGAAAGGGACGTTTATGAGG 59 142570255 142573750 GGGCAGATGATGTGTTGAC 59 NA Rattus norvegicus 81 Epor ENSRNOG00000012619 ENSRNOT00000017369 2 1 1 86 8 22972746 22973124 CTCTTACCAGCTCGAAGGT 59 22972678 22972696 GAACACCAGAAACGCATGG 60 NA Rattus norvegicus 81 Tbc1d23 ENSRNOG00000001642 ENSRNOT00000002240 2 1 1 80 11 45455696 45455714 AACAAGCCAGACATCAAGC 59 45455758 45456840 AACCAACAGATGACTGGGA 59 NA Rattus norvegicus 81 Olr464 ENSRNOG00000051431 ENSRNOT00000083865 3 1 1 60 3 73250429 73250448 AAGACACAAAGCCTTCTCCA 60 73250468 73250489 ACCAAAGAAGATAGTAACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027450.1 ENSRNOG00000045599 ENSRNOT00000058388 1 1 1 80 17 31779675 31780084 TGGATTCCTGCTTCCAGAG 59 31779613 31779631 AGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 Kcnk7 ENSRNOG00000020784 ENSRNOT00000028197 1 1 1 84 1 221059904 221059922 CTAGGAGACTTGCTGCCTG 60 221059969 221060227 GCAAGTAACCAAGAAGTGCA 59 NA Rattus norvegicus 81 Hars ENSRNOG00000028105 ENSRNOT00000039291 1 1 1 80 18 29615051 29615161 GCATTGATGACAAGATCTCCT 58 29614991 29615009 GCACTGCCTCATAGATGAC 58 NA Rattus norvegicus 81 Rn60_X_0594.4 ENSRNOG00000051297 ENSRNOT00000076037 3 1 1 60 X 58556764 58556782 TTCTGATTTGCAAGGTCCC 58 58556805 58556824 TTTGAAGTCCTGAGCAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1137 ENSRNOG00000047576 ENSRNOT00000072311 2 1 1 60 8 19154427 19154447 CCCTGAGGTATACAATCACCA 59 19154387 19154405 AGACAGAGCAGAACAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000057734,ENSRNOT00000082549,ENSRNOT00000068553 2 4 6 81 17 84168236 84168255 CTACAGCTTTGAGCGTAACG 59 84167029 84168193 TCCTGAGTGTATTTCACCGA 59 NA Rattus norvegicus 81 Sil1 ENSRNOG00000019826 ENSRNOT00000026895 1 1 1 80 18 28149519 28149537 TCTCAGGACCTCAAGAGTG 58 28133067 28149475 CTGTCTTGCCAGTTCATCC 59 NA Rattus norvegicus 81 LOC690235 ENSRNOG00000024200 ENSRNOT00000033223 1 1 1 60 8 16485570 16485588 CTCCCGTTTGATGATTCCA 58 16485528 16485547 CATACTTCCCTGACACAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep5 ENSRNOG00000018616 ENSRNOT00000025110 1 1 1 60 1 73719209 73719227 CATTCTGTCCCTCCACCTG 60 73719251 73719269 GTGAAGGAACTCGGAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000066363,ENSRNOT00000082017 3 2 3 112 6 2316418 2316436 AAGTCTTGCAGAGTCTGGG 59 2315943 2315961 GACTGTCTGCACTAAGGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc30 ENSRNOG00000008560 ENSRNOT00000011325 3 1 1 80 5 138395652 138395671 ATCAAGGAAGCAAAGAGCAC 59 138389320 138395611 CTGGTCTAGAAGAATCCTCCT 58 NA Rattus norvegicus 81 LOC100910899 ENSRNOG00000046328 ENSRNOT00000071676 3 1 1 60 4 1372267 1372287 TCCTCTCATTTACAGCCTCAG 59 1372306 1372327 CTTTAAGGTTCTCTTCACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyw5 ENSRNOG00000010100 ENSRNOT00000013502 2 1 1 80 9 64081226 64081247 ACAGGAAAGAAGCGAATTACAC 59 64080518 64081189 CAGCACTTCTGATTTAGAACCTG 60 NA Rattus norvegicus 81 Atg2a ENSRNOG00000060707 ENSRNOT00000090100 3 1 1 80 1 221621575 221621595 GTCTCAGAGTACCTTCTCCAC 59 221621636 221622017 CCTGTCTCATCCTTAGCCTC 59 NA Rattus norvegicus 81 Olr306 ENSRNOG00000047643 ENSRNOT00000044878 2 1 1 60 1 213195346 213195366 ATCACCCACTTCTTCTGTGAG 60 213195385 213195406 CATATGTGGAGCTACAGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375,ENSRNOT00000079137 3 2 2 80 6 22242120 22242141 AATGACTGATGGATACTCTGGA 59 22235062 22242080 GGTTTCAGTTCTCGGATAGG 58 NA Rattus norvegicus 81 Dmbt1 ENSRNOG00000020560 ENSRNOT00000054910 3 1 1 80 1 201679761 201679780 ACAGTGTTACTCGAAGAGGG 59 201679821 201680760 TTGACAGACAAAGGAGATTGG 58 NA Rattus norvegicus 81 Mrgprx4 ENSRNOG00000014242 ENSRNOT00000019061 2 1 1 60 1 103379503 103379521 TTACTGTGCTCCTGTCCTG 59 103379461 103379483 CCTACAAGGAAGTAAATGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6ka3 ENSRNOG00000006632 ENSRNOT00000008938 2 1 1 80 X 37545784 37545806 CTATTACCTCAGATGACGAAAGC 59 37545843 37548073 TACTGTTCCTGTGTAATTGCTG 59 NA Rattus norvegicus 81 Lingo4 ENSRNOG00000022863 ENSRNOT00000036656 3 1 1 90 2 195623679 195626819 ACTCACACTATGCACAAATCG 59 195626871 195626889 CCCTCACAGGTGATAACCC 60 NA InUTR Rattus norvegicus 81 Cnot11 ENSRNOG00000023220 ENSRNOT00000031352 3 1 1 80 9 46277525 46277543 TCACCGAGTATTTCTCGGT 58 46277584 46279439 CAGCTGTAGTTAGTCGATTCAC 59 NA Rattus norvegicus 81 Smpd1 ENSRNOG00000017977 ENSRNOT00000024224 3 1 1 80 1 170384064 170384465 CAACTATGGGCTGAAGAAGG 58 170384507 170384526 GCTATGTTCAGCATCTTGCA 59 NA Rattus norvegicus 81 Pim1 ENSRNOG00000000529 ENSRNOT00000000637 3 1 1 80 20 8168180 8168200 GATATTCCATTTGAGCACGAC 58 8168239 8169170 ATGTTGACATTCTGAAGAGACC 59 NA Rattus norvegicus 81 Taf7 ENSRNOG00000020024 ENSRNOT00000027125 2 1 1 86 18 30781122 30781140 AAACTGGAAGGTAGACGCA 59 30780677 30781072 TTCCAGCTCAGTTCACCAG 60 NA InUTR Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 2 2 2 97 1 222319568 222319589 GTATAAGAAGGACAAGCAGCTG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Ralb ENSRNOG00000002440 ENSRNOT00000003413 1 1 1 80 13 35510914 35510934 CTCACTGTCCTTCACAAGGA 59 35510853 35510872 GTCATACATGAACTGGAGCG 59 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 1 1 2 80 6 96165189 96165571 CTCGGTCTACAGAATGACCA 59 96153213 96153234 CTATTCTTCAGACAGGGATCGA 59 NA Rattus norvegicus 81 Psbpc2 ENSRNOG00000020301 ENSRNOT00000027498 2 1 1 86 1 225690832 225692485 GCTATGAAGCTAATGGCCAG 59 225692531 225692552 CCTCAGGGTTTAGTAAGAAGGT 59 NA Rattus norvegicus 81 Mir27b ENSRNOG00000035576 ENSRNOT00000053699 2 1 1 60 17 823465 823483 CTCTAACAAGGTGCAGAGC 58 823507 823525 GTGAACAAAGCGGAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhbg ENSRNOG00000019412 ENSRNOT00000026396 1 1 1 80 2 187612347 187612501 GGTATAAGTTCTTTACGCCTATCC 59 187612290 187612308 GCATCCCATGAAGGTTGTG 59 NA Rattus norvegicus 81 Ofd1 ENSRNOG00000004574 ENSRNOT00000006074 2 1 1 80 X 29594484 29597293 TTTCAGATGGAACAAGCCAG 59 29597336 29597354 GCAGCAACATCTATGCCAG 59 NA Rattus norvegicus 81 Dnajc19 ENSRNOG00000049819 ENSRNOT00000071944 1 1 1 80 2 120506285 120506783 ACTAGGTGTAAGCCCTACTG 58 120506825 120506844 TTGTCTGGGTGGTTTAAGAG 58 NA Rattus norvegicus 81 Kcnh5 ENSRNOG00000009542 ENSRNOT00000013275 1 1 1 80 6 98097936 98097957 CTTGGTTTGTGATTGATCTGCT 60 98070957 98097895 TGCTGATTCCCTCATCCAC 60 NA Rattus norvegicus 81 Them5 ENSRNOG00000043445 ENSRNOT00000066020 2 1 1 81 2 195584044 195584063 CTCCTTCAAGTCCAACAGAG 58 195584107 195585030 CCAGTCCTGTTTGTCTGAG 58 NA Rattus norvegicus 81 Cldn3 ENSRNOG00000046007 ENSRNOT00000075280 3 1 1 66 12 21832101 21832119 GTCTATCCTACTGGCAGCC 59 21832053 21832071 TACGCAGTTGGTACACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 3 2 2 80 1 138298027 138298045 ACCAACCATCTACCATGCC 60 138298088 138312383 TGGAAGTCACAGAAGACCAC 60 NA Rattus norvegicus 81 Wnt8a ENSRNOG00000020157 ENSRNOT00000064574 2 1 1 92 18 27333381 27334034 AATAATGGGAAAGCAGGTGG 58 27334089 27334107 GTCCACAAAGAGTCTGGAG 58 NA Rattus norvegicus 81 Gas2l1 ENSRNOG00000009040 ENSRNOT00000065135 3 1 1 81 14 85315338 85315437 CATCTTTGTGAGGGTGCTG 59 85315275 85315294 CTTGTCTAGGTAGTGCTCCA 59 NA Rattus norvegicus 81 Ogn ENSRNOG00000029792 ENSRNOT00000020532 2 1 1 105 17 14616669 14616687 TGATGCTGTACCACCACTG 60 14614015 14616603 TCTTAAGTTAGGCATGTCTGCA 60 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000026947 1 1 2 80 18 30952870 30954309 CTAGCCAATCTGAAGTTCCT 57 30964433 30964451 TATCGAACTGGTTGTTGGG 58 NA Rattus norvegicus 81 AABR07064622.1 ENSRNOG00000047877 ENSRNOT00000071999 2 1 1 60 6 87426476 87426494 AGAAGCCTACAGAACTCCA 58 87426434 87426452 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab11fip2 ENSRNOG00000009523 ENSRNOT00000012734 1 1 1 81 1 281095118 281095136 AAGTCTAGCACTGTAGGCC 59 281094145 281095074 TGAGACTTCCACTTTCTGGA 58 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000085146 1 1 2 113 6 55698680 55698698 AAGAGCAGATGCCTCATGG 60 55694612 55695549 GGGTCATCAAATACTGTCTTGTC 60 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 3 1 1 104 4 145121601 145121619 ATTATCGGCATCCTCAACG 58 145117684 145121536 ATCTTTGTTCTCCTGTTTGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Bmp10 ENSRNOG00000009316 ENSRNOT00000012365 3 1 1 83 4 119225222 119229607 GGAGCTTCAAGAATGAAGATCTG 60 119229650 119229668 TGGACACGTTGAAGAGGAG 59 NA Rattus norvegicus 81 Uqcc3 ENSRNOG00000045561 ENSRNOT00000074747 2 1 1 87 1 225076802 225076910 GTTAATGCTGCAGGAGATGC 60 225076734 225076752 CTTCAGGGTAGCCATCACC 60 NA Rattus norvegicus 81 Olr1233 ENSRNOG00000051518 ENSRNOT00000081759 3 1 1 60 4 1447845 1447866 GTGTCTGAGTTCATTCTTATGG 57 1447887 1447905 CAAATAAGGGCCATCGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr354 ENSRNOG00000061455 ENSRNOT00000075730 2 1 1 60 1 230031343 230031361 CTAAGTGTCACCTGCTGCT 60 230031383 230031403 CAAGAGCAACATGGATAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pml ENSRNOG00000008400 ENSRNOT00000043434 3 1 1 82 8 63031842 63031861 GAATTCCTCGACAGTACTCG 58 63020591 63031798 CAGTAGATGTTAGTCTGCGC 59 NA Rattus norvegicus 81 Slc25a28 ENSRNOG00000016751 ENSRNOT00000022633 2 1 1 97 1 263422028 263423144 ATATTGCCAATGGTGCAGC 59 263420849 263420867 GTTGTACATCTGCATCCGC 59 NA Rattus norvegicus 81 Gga2 ENSRNOG00000018599 ENSRNOT00000025309 2 1 1 80 1 191966414 191966432 GACTTCTCAAGAGCAACCA 57 191965902 191966371 TTTCTTGTTCCTCCTTGACC 58 NA Rattus norvegicus 81 Mageb18 ENSRNOG00000038230 ENSRNOT00000039605 2 1 1 166 X 61231638 61232010 GTTTGTCAAGGGTGACCTC 58 61231490 61231508 AGAAAGGACTTGGAGAGGC 59 NA InUTR Rattus norvegicus 81 Neurod4 ENSRNOG00000008449 ENSRNOT00000011167 1 1 1 85 7 9703189 9711853 GGGAAAGAGAATCTATAGATGGC 58 9703126 9703144 TTGTCCATCCAGGATTGTG 57 NA InUTR Rattus norvegicus 81 Olr753 ENSRNOG00000046847 ENSRNOT00000043765 3 1 1 60 3 102554056 102554075 TTGTGCTATTCTTTGGACCC 58 102554098 102554116 ACCCAAGTGATGCTAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1345 ENSRNOG00000047633 ENSRNOT00000049347 2 1 1 60 9 99680835 99680853 CTAGCCATCATCCTCACTG 57 99680793 99680812 GGAAGTAGTACATGGGTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufsp1 ENSRNOG00000051006 ENSRNOT00000073356 3 1 1 60 12 22471579 22471597 GATGCAGATGCTCAGTCCA 60 22471537 22471555 AGACTTCCATATCTGGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 3 1 1 60 4 172125711 172125730 CTTGCCAAGATGATGTTCCT 58 172125752 172128413 AAACCTTGTTGGTTAGCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Vwc2 ENSRNOG00000049076 ENSRNOT00000071558 3 1 1 160 14 91204122 91227377 GAGGAGTTCGTGGTGTCTC 60 91346093 91346111 TCTGCAAAGCAGTTTGGAC 59 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000090579,ENSRNOT00000067823 3 3 3 60 5 25578789 25578812 TATCCCTCCTAACTATCATACACC 59 25578752 25578772 GTGATAAGTTACCTCTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc28 ENSRNOG00000032590 ENSRNOT00000046920 2 1 1 80 12 51444476 51444494 CTGGTGCTGTACTACTCCC 59 51442827 51444434 GTGAAACTTCAGGATTCCTGC 60 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 2 2 2 80 17 9992754 9996714 GAAGATGCTGAAAGACAATGC 58 9992694 9992716 CTTCCGATTAGCTTCATCATCTC 59 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000086260 1 1 3 80 3 156699457 156707479 CGAATCAAGGGTGAGAAAGAC 59 156707519 156707539 CTGATTTCGGATCTTGTCCAC 59 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000041390 1 1 3 63 3 156662164 156662183 GCATAAGGAGCACAAGAAGG 59 156662206 156662925 GCTCCTGTTGCTATGTTTAGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC691195 ENSRNOG00000049848 ENSRNOT00000040249 3 1 1 60 3 91870236 91870259 GTACTCGGTATATGTTCTCTAGAC 58 91870278 91870296 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp644 ENSRNOG00000002112 ENSRNOT00000002882 2 1 1 80 14 4182269 4182288 CATTAAACGAAGACAGTCCG 57 4182329 4197696 TCTGCTTACAATCTATGGCTG 58 NA Rattus norvegicus 81 Msto1 ENSRNOG00000020357 ENSRNOT00000027579 2 1 1 80 2 188213031 188213126 CCTAGGGTCTTGAGTTCGTC 60 188212970 188212990 GAAGCTTGAGAAGAAGTGTGG 59 NA Rattus norvegicus 81 Dpysl5 ENSRNOG00000008996 ENSRNOT00000012273 2 1 1 80 6 26959884 26959902 GATCAGCCATCCAGAGGAG 59 26955668 26957332 TAGATGGGACAGTGAGTCCT 59 NA Rattus norvegicus 81 Cnfn ENSRNOG00000020530 ENSRNOT00000027845 2 1 1 114 1 82234887 82235354 TGAAAGGCAAAGCCATGTC 59 82234791 82234809 ATATCGTTGCAACAGTCGG 58 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 2 1 1 64 4 120157482 120157500 GAGAACGGACATGAACGTG 59 120157528 120159019 CTTGGGATACCTGGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0616.4 ENSRNOG00000051236 ENSRNOT00000076945 2 1 1 61 X 60969918 60969937 GCTGTTGGTGCTATAATTGC 58 60969961 60969979 TCTTCAGTGGTTGTCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl24 ENSRNOG00000001611 ENSRNOT00000002194 1 1 1 99 11 47121546 47121564 AAATGTGAGTCCGCATTCC 59 47118809 47121484 GAATTTCTTCCGACTGTCCT 58 NA Rattus norvegicus 81 LOC100910363 ENSRNOG00000058097 ENSRNOT00000086631 2 1 1 60 2 35192167 35192188 TGTTTCTTGTACACAGTGATGG 59 35192128 35192148 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt11 ENSRNOG00000020279 ENSRNOT00000027474 2 1 1 80 2 188116360 188116378 AGAATGACAGTGGTGGTCC 59 188115351 188116321 CTTGACATAAGGATTACCTGAGAG 59 NA Rattus norvegicus 81 Rn60_X_0632.2 ENSRNOG00000051148 ENSRNOT00000076552 2 1 1 60 X 62517067 62517085 CAAACAAACAGCTGAGGCA 59 62517107 62517127 ATTTGTCATAGATGACCCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 2 2 2 80 X 43628856 43628878 CTTTGTGATGAGTGATTACCGAG 60 43629007 43629255 CGACACTTCATAGCAACCTG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000090603 2 1 5 80 17 39376123 39377429 CTCCCTTCTCTGGAACACTC 60 39377470 39377490 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Capn12 ENSRNOG00000020389 ENSRNOT00000027645 2 1 1 112 1 87067409 87067647 TTTCCACTTTCAGCTCTGG 58 87067722 87067741 ACTCGTTCCTTTGTTCTGAG 58 NA Rattus norvegicus 81 Pvrl3 ENSRNOG00000002176 ENSRNOT00000002957 1 1 1 80 11 57960776 57965364 GTGACTGTGCTAGTTGAACC 59 57960715 57960733 TGCTACGGTCTCATTTCCT 58 NA Rattus norvegicus 81 Drc1 ENSRNOG00000024905 ENSRNOT00000036815 1 1 1 80 6 27450785 27450803 GCAAGAAGGAGAGTGAGGA 59 27449835 27450744 GCAGGAGTTTAGTCAGTTTCAG 59 NA Rattus norvegicus 81 Sox9 ENSRNOG00000002607 ENSRNOT00000003511 3 1 1 122 10 101289164 101289182 CATGAACGCCTTCATGGTG 60 101289268 101290103 CTCTCGTTCAGCAGTCTCC 60 NA DesignRelaxed Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 3 2 2 81 10 37285805 37286424 AAGGAGATGGAGAAACCCG 59 37285742 37285760 TATTCTGGTGGCACAACGT 60 NA Rattus norvegicus 81 Myo1c ENSRNOG00000004072 ENSRNOT00000036666 2 1 1 80 10 63808094 63808198 TCAAATATCTGACCAGGCTCC 60 63808240 63808258 CCTTGGCGATGATCTTCCT 60 NA Rattus norvegicus 81 Naaladl1 ENSRNOG00000021000 ENSRNOT00000054835 2 1 1 80 1 221480817 221480951 GCCACCAAAGAGATCAGTG 59 221480992 221481013 ACTACTGCGGTTAGTATATCGG 59 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021,ENSRNOT00000059895 2 2 2 80 10 18187823 18189254 GTGACTTGCTGCAATATCGG 60 18187762 18187780 TGAAGCTCATGTGGTCCTG 60 NA Rattus norvegicus 81 Necap1 ENSRNOG00000009236 ENSRNOT00000013272 2 1 1 80 4 155718044 155718063 AGGAAATGGATAGTCGTCCC 59 155718102 155718555 CTGTAATGTTCCCAATACTCAGC 60 NA Rattus norvegicus 81 Ltbp1 ENSRNOG00000033090 ENSRNOT00000047674 3 1 1 80 6 21274466 21274486 AATACAGCAGGGTCCTATGAC 59 21268420 21274427 TTCATTAATGTCTTGACAGCCC 59 NA Rattus norvegicus 81 AABR07034637.1 ENSRNOG00000040314 ENSRNOT00000062045 2 1 1 80 11 82052788 82052807 AGGACTGAGAAGGGAAAGAG 59 82052849 82052868 CTCTCCTCTTCTCCTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 2 3 3 80 X 37866445 37893102 GTGACTCTCATCAATAAGGACTG 59 37866387 37866405 GTCAGGAAACACTCCTCGT 59 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000092083,ENSRNOT00000022203 3 2 2 81 17 15856623 15856641 TACCGAGCACTGTACATCC 59 15856684 15857701 CTCTGCAATCTGAGTTGTGAG 59 NA Rattus norvegicus 81 Prl8a9 ENSRNOG00000024843 ENSRNOT00000034490 1 1 1 80 17 39241184 39242524 GTCAAGCTCAGTTCTCAGG 58 39242565 39242586 CAGGAATGGATGAAACTTTCTC 58 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000065555 2 1 2 86 10 84979760 84979820 AAGACAAGCTAGGTTGGCT 59 84979870 84979888 GAAAGTGCATGACTCGACG 59 NA Rattus norvegicus 81 Tcea1 ENSRNOG00000022323 ENSRNOT00000010893 2 1 1 80 5 14519112 14519132 CACCAAGCACTTCTGATTCTG 60 14517976 14519073 CAACATAATCATCTCCTGTCCG 59 NA Rattus norvegicus 81 Ss18l1 ENSRNOG00000060010 ENSRNOT00000085718 2 1 1 80 3 175439806 175440745 GTACTACCCAGATGGCCAC 60 175440789 175440807 TCCTCAAATGAACGGTCGT 59 NA Rattus norvegicus 81 Kdm6b ENSRNOG00000037613 ENSRNOT00000067677 1 1 1 80 10 56005568 56005588 TGAAACCGAAGATCAACACTG 59 56005402 56005528 TGCTCTCCAAATAAATGCTGG 59 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 1 1 1 60 5 140023874 140023893 TGACTTTATTGGCAATCGGA 58 140020272 140023852 TTCTGAATTGACCGAATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Homez ENSRNOG00000014887 ENSRNOT00000019979 3 1 1 60 15 33527006 33527026 TATGTGAAGGAAGAGTCAGCA 59 33513136 33526984 TACCCTTCAGAGACAGCTC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 2 2 2 80 1 164869916 164873138 TGCCTCTAGATGTCTTTCAC 57 164873179 164873199 TCACATAGACCATCTTGATGC 58 NA Rattus norvegicus 81 Prkdc ENSRNOG00000025028 ENSRNOT00000035247 1 1 1 80 11 89297327 89299165 GCTACTCAGTTTCTTCCAATCC 59 89297268 89297289 TTTCATTGGCAACATGAGACTG 60 NA Rattus norvegicus 81 LOC103691445 ENSRNOG00000054595 ENSRNOT00000090178 1 1 1 60 2 35531460 35531481 GACCAAGGGAAAGTATCATCAG 59 35531421 35531442 TAAGAGGATTCAACATAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jtb ENSRNOG00000016379 ENSRNOT00000064752 3 1 1 80 2 189592242 189592472 GAGAAGCTATCAGTGAGCAC 58 189592515 189592533 ACACGGAGTACACTCTTCG 59 NA Rattus norvegicus 81 Actbl2 ENSRNOG00000043292 ENSRNOT00000065528 3 1 1 60 2 42829729 42829747 TTGACCCTGAAGTATCCCA 58 42829770 42829789 TCTTCTCCATGTCATCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 1 2 2 80 1 267018933 267018952 AGCTTCTGTAATGCCATCAC 58 267018993 267019344 CTGCTTCTTGGTGATCTTCAG 59 NA Rattus norvegicus 81 Tchhl1 ENSRNOG00000009610 ENSRNOT00000038311 2 1 1 80 2 193807412 193807908 CTTCCTTCAGCCACATGTC 59 193807952 193807970 AAACTGATGGTGCCATCTC 58 NA Rattus norvegicus 81 Vom1r90 ENSRNOG00000058136 ENSRNOT00000083168 1 1 1 80 4 121676551 121679164 ACTCTGTTGTCTACTTACCCT 58 121676491 121676509 TTGCTTGTCAACAACTCCA 58 NA InUTR Rattus norvegicus 81 Gaa ENSRNOG00000047656 ENSRNOT00000075796 3 1 1 80 10 108409156 108409176 ACCTGTATACACTCTTCCACG 59 108409218 108410759 GATCCTCAGGGAACTCCAG 59 NA Rattus norvegicus 81 Psmb4 ENSRNOG00000020979 ENSRNOT00000028484 1 1 1 80 2 196045874 196045892 TATGCTAGGTGCTTCAGGA 58 196045597 196045830 AGCTCCTCATCAATCACCA 58 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 3 2 2 85 15 18349558 18351254 TGACATGTACTCTGGAGAACC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Clip3 ENSRNOG00000050104 ENSRNOT00000072819 1 1 1 80 1 90965772 90966596 AGTGCATCAAGTGACAATGAC 59 90965712 90965732 GAGTTCTCTGATGCAATGTCC 59 NA Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 3 2 2 82 14 88573312 88573330 GATGACTCTGCTGAGGAGG 59 88573375 88573499 TCATCCTTCAACTCCAGCTG 60 NA Rattus norvegicus 81 Mir542 ENSRNOG00000049278 ENSRNOT00000073411 2 1 1 62 X 158152160 158152178 GGGATCATCATGTCACGAG 58 158152199 158152222 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000049574 3 1 2 81 1 227763115 227765893 AAATCTTTGGTAGATGGCAGC 59 227765933 227765954 TGACAGAGATGATAATGATGCC 58 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000032937 1 1 2 80 1 227763115 227814924 AAATCTTTGGTAGATGGCAGC 59 227814964 227814984 GGCAGACATGATAATGATGCC 60 NA Rattus norvegicus 81 Mir880 ENSRNOG00000041210 ENSRNOT00000062963 3 1 1 60 X 151282034 151282055 TACTCAGATTGGTATGAGTCAC 57 151281995 151282016 TGCTCTACTCAGAATGAATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911727 ENSRNOG00000047206 ENSRNOT00000064178 3 1 1 80 1 75253637 75253655 TCCTGAAACGCTTTGAGGA 59 75253696 75254083 CTTCCAGAACATGTATCTGTGC 60 NA Rattus norvegicus 81 Olr1124 ENSRNOG00000046796 ENSRNOT00000050430 3 1 1 60 8 18796005 18796024 CTGATGGTACTGCACTTGTC 59 18796045 18796065 TTTCACAGAAGAAGTGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nckap5 ENSRNOG00000021553 ENSRNOT00000038020 1 1 1 80 13 42332268 42364472 CGTAATAGAATCGAACTGCCA 58 42332208 42332226 GAGCGATTTCCTGAGTCTG 58 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 2 2 2 80 1 177195005 177199075 ATTCCAGTCCAATTCAACACC 59 177199116 177199135 GAAGACGACGAAGATGAAGG 59 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000061158 3 1 2 91 15 18411108 18411127 GACATCGAGGGACTCATGG 60 18411182 18411200 TTCACAGGGTTTAGCAGCT 59 NA Rattus norvegicus 81 RGD1307443 ENSRNOG00000018141 ENSRNOT00000024536 3 1 1 80 17 42192554 42192573 CTGATGACCGAGGAATTGTG 59 42190889 42192514 CAGAGCTTCCAATGATATCTCC 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 3 1 2 82 10 90348247 90348265 CACCGATGAAGACAGTTGG 59 90348311 90348435 CCAGGTATCCCTTCTGAGC 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995,ENSRNOT00000068322 1 2 2 81 1 83966348 83966366 GCATTAGTACTGCAGGCAG 59 83966414 83966749 ACACTATGCCATTTCCGTG 58 NA Rattus norvegicus 81 Ripk2 ENSRNOG00000009389 ENSRNOT00000012963 1 1 1 80 5 29843537 29843556 TAGAAACGCTGGTTCTCCTG 60 29841264 29843494 TCTTGAGGTCCTCCATGGA 60 NA Rattus norvegicus 81 Ceacam19 ENSRNOG00000043088 ENSRNOT00000045073 1 1 1 80 1 80808459 80809571 CTGTTCTCAGCTTTGTTCCT 58 80808398 80808416 CTGCTCTGGAATCATCTGG 58 NA Rattus norvegicus 81 Msmo1 ENSRNOG00000032297 ENSRNOT00000044171 2 1 1 80 16 26873751 26873772 GATCATGTAATTCTTCTGTGGG 57 26873811 26874956 AGGGATATCATAACCACTGTG 57 NA Rattus norvegicus 81 Rnf11l1 ENSRNOG00000048819 ENSRNOT00000071608 3 1 1 60 9 86653635 86653653 CCAATTCGATTTCTGCCGT 59 86653593 86653614 TCAACCAGTCATCTATACAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911376 ENSRNOG00000029142 ENSRNOT00000042829 3 1 1 60 1 171059434 171059452 CTCCATTGCTCAACCTGTC 59 171059392 171059411 AGGACAAAGTCTGTAAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd1lg2 ENSRNOG00000016136 ENSRNOT00000021614 3 1 1 82 1 247581220 247593789 CATAGCAGCTTTATTCACGGT 59 247593833 247593851 AATCACACTCCAGGCTCAC 60 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 3 1 1 68 7 26141420 26144307 CCTGCGAGCTTAATAGGGT 59 26141370 26141388 TGTCGTGTTGAATCAGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 2 2 2 89 3 7194090 7194919 GTGTAACAAGGTGTTCTCCAC 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000026900 1 1 2 81 1 85297343 85299432 CCCTAGTCTACAGTCCTAGCT 60 85297282 85297300 AGAAGCAGGCAGAACTCTG 60 NA Rattus norvegicus 81 Il25 ENSRNOG00000016804 ENSRNOT00000022563 3 1 1 95 15 33596779 33598966 AGCTATGAGTTGGACAGGG 59 33599025 33599043 AGATCCTGTCTGTAGGCTG 58 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 2 1 1 60 1 239209399 239223102 CTGTCAAAGCCTAAGAAATGTG 58 239209360 239209382 TGTGGTAAGAGTCCTTTACTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Golga3 ENSRNOG00000037437 ENSRNOT00000056656 3 1 1 80 12 52551198 52551216 GCAGATCCCAGACCTTCAG 60 52547628 52551156 GATGCAGTAGAGCCTGTAGAG 60 NA Rattus norvegicus 81 LOC100910667 ENSRNOG00000049512 ENSRNOT00000072050 1 1 1 60 8 43082233 43082251 GCAGATCCAAAGCCTTCAG 59 43082191 43082209 CCAAAGAAGACCGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 2 4 4 81 15 51927600 51936380 CCTTCAAACAAGAATGTCGGA 59 51927539 51927557 GCAAGAGGAAGACAGTCGA 60 NA Rattus norvegicus 81 Fmo13 ENSRNOG00000043014 ENSRNOT00000066609 1 1 1 81 13 84686719 84688895 CTAAACACAGATTTCTCAGCCA 59 84686659 84686677 TTTACCAGCACTCTTCCGG 60 NA Rattus norvegicus 81 Dab2 ENSRNOG00000028930 ENSRNOT00000050655 2 1 1 80 2 55748515 55749836 GAAACTCAAGGGAATGGCAG 59 55749878 55749897 CCAGACAGGGAAATGTTGAC 59 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 2 2 2 81 2 188750480 188750874 TGCAAACAGATCATTGCCA 58 188751204 188751222 CAACGTACTCAGCTGTGTC 59 NA Rattus norvegicus 81 Slc6a4 ENSRNOG00000003476 ENSRNOT00000004717 3 1 1 81 10 63167659 63168895 TGTTACCAAGATGCCCTGG 60 63167596 63167614 CAAGCACCGTGAAGATGAC 59 NA Rattus norvegicus 81 Ano9 ENSRNOG00000015830 ENSRNOT00000044393 1 1 1 80 1 213920564 213920582 GACTCTCCTCATGAAGCCT 59 213919094 213920521 ACAATTCGGATTCTTGTGGT 58 NA Rattus norvegicus 81 Myo19 ENSRNOG00000002852 ENSRNOT00000003886 1 1 1 80 10 72226203 72226221 CAACAAAGTCCAGACACCA 58 72226264 72227149 TGGAACTTTATTGAGCCCTG 58 NA Rattus norvegicus 81 Myo19 ENSRNOG00000002852 ENSRNOT00000003886 2 1 1 80 10 72225105 72225124 CTCGGAAACACATCAGAAGG 59 72225167 72225979 AGGCCATTCTGATTCTCCA 58 NA Rattus norvegicus 81 Agpat3 ENSRNOG00000001205 ENSRNOT00000001602 3 1 1 83 20 11130071 11130089 CCCACTCAAGTACCACCTG 60 11130136 11131026 TAGATAGCTGCAACCGTCC 59 NA Rattus norvegicus 81 AABR07043288.1 ENSRNOG00000057732 ENSRNOT00000074693 2 1 1 81 19 27106830 27108735 GCTCAACAACGTAATGAAGTC 58 27108775 27108796 AAGGCTGAATAGTAAAGGTCTG 58 NA Rattus norvegicus 81 RGD1311458 ENSRNOG00000013721 ENSRNOT00000018473 3 1 1 80 11 60928883 60928902 CTGTGCTCAGTTCTCTACAG 58 60926854 60928840 GCACTGTTCTACCTGTCTG 58 NA Rattus norvegicus 81 Hpcal4 ENSRNOG00000050983 ENSRNOT00000074347 3 1 1 80 5 140875930 140875948 AGGGTTTCCTGAAGGACTG 59 140875986 140876143 CGTAAGGAAAGAACTTGATGTAGAG 60 NA Rattus norvegicus 81 Tpt1 ENSRNOG00000001049 ENSRNOT00000001383 1 1 1 82 15 57892625 57892991 CATGAAATCACTCAAGGGCA 59 57893036 57893054 TAATTTGCTCTGCAGCTCC 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228,ENSRNOT00000072911,ENSRNOT00000072009 1 3 3 82 9 10359327 10359421 GAAGCCGGAGAAGACTCTG 60 10359263 10359284 GAATGCGTTAGAGATGATGTCC 59 NA Rattus norvegicus 81 Slc4a9 ENSRNOG00000018525 ENSRNOT00000025137 3 1 1 80 18 29354938 29355234 GTGACCCTCAATTCCAGTG 58 29355277 29355296 CCTGTAGGAAGGCATCTAGG 59 NA Rattus norvegicus 81 Otud7a ENSRNOG00000015503 ENSRNOT00000021068 3 1 1 81 1 124634540 124634559 GTCCTAGCCCACATACTACG 60 124634603 124636903 GTGCAAATGCTTCTCCACC 60 NA Rattus norvegicus 81 Zbtb38 ENSRNOG00000012386 ENSRNOT00000016625 1 1 1 60 8 104590727 104590745 ATGAAGTGAGTGACCAGGA 58 104590685 104590705 GGCTTGTAGTTGTAGTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif2ak4 ENSRNOG00000006027 ENSRNOT00000009222 1 1 1 80 3 110232307 110232328 CATCAACCTAACCCAGAAACTC 59 110232369 110234573 AACTCTTCCTGGGACTGTG 59 NA Rattus norvegicus 81 RGD1563528 ENSRNOG00000023163 ENSRNOT00000031670 3 1 1 60 X 11101234 11101253 CTACTCCATGGCTTTCATGC 59 11101193 11101212 CATCAGCAGGTAGTTTCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med6 ENSRNOG00000006976 ENSRNOT00000009483 2 1 1 80 6 105313037 105315939 GATATCCGAGATAATCTGCTGG 58 105312978 105312996 ATCCAGGACACTACCACTG 58 NA Rattus norvegicus 81 Taf11 ENSRNOG00000024601 ENSRNOT00000038195 1 1 1 80 20 7480329 7480349 GCTGAAATTAGACACCAAGGA 58 7478530 7480288 ACCAGGATTTGCATCTTCTG 58 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373,ENSRNOT00000087416 3 3 3 82 5 142703748 142704803 AAGCACCCAAATGAGATCTG 58 142704847 142704866 GCCTCTTCACTTGGATTCTC 58 NA Rattus norvegicus 81 Igsf6 ENSRNOG00000017277 ENSRNOT00000023262 2 1 1 80 1 191003874 191007421 CTTCAAGTTGGTGTGGTGG 59 191003812 191003830 AGTCTGAGACGTGTAGTCC 58 NA Rattus norvegicus 81 Soat2 ENSRNOG00000053769 ENSRNOT00000085896 3 1 1 80 7 143766811 143766829 CATCTTCTGCTTCGTCCTG 58 143766873 143767285 GTGAAGTTCAGCAGACCTC 58 NA Rattus norvegicus 81 Fbxl12 ENSRNOG00000020368 ENSRNOT00000068308 1 1 1 144 8 21660832 21660850 AAGAGGCTAGTGGATGACC 59 21657984 21658002 CAGAGAATAGGTAGCCGCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gchfr ENSRNOG00000012290 ENSRNOT00000016458 1 1 1 92 3 110975990 110977402 ATCCGTATGGAAGTGGGTC 59 110977458 110977476 CAGGACTCGTCTCTTGGAG 59 NA Rattus norvegicus 81 Gem ENSRNOG00000015160 ENSRNOT00000020826 2 1 1 86 5 25350966 25352334 CTGTGTCAGAAGGGAGAGC 60 25352384 25352402 GTTCCTTCACGTTGTGCTG 60 NA Rattus norvegicus 81 Nkx2-6 ENSRNOG00000021910 ENSRNOT00000032826 3 1 1 65 15 51034667 51034686 CTCAAATCTTGTGAGGGAGC 59 51037367 51037385 AGGTTCTCGACTCCAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 2 1 1 67 18 35196584 35196602 GCTTCATTCGATGCTCCTG 59 35197277 35198435 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 3 1 1 69 18 35196582 35196600 ATGCTTCATTCGATGCTCC 58 35197277 35198435 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699,ENSRNOT00000081105 3 2 2 80 17 42622170 42622189 GATGAGTGATTTCGCTGGAG 59 42619654 42622127 TGGGCTTTCCATTCCTCAG 60 NA Rattus norvegicus 81 Plxnd1 ENSRNOG00000025209 ENSRNOT00000032158 1 1 1 80 4 147867491 147868079 CGGTTTCAGAGGAGATCGT 59 147867429 147867447 CCTTGGAGACATTCACCGT 60 NA Rattus norvegicus 81 Slc36a3 ENSRNOG00000021310 ENSRNOT00000037274 3 1 1 80 10 40467323 40467342 CTGGGCTACATGAAGTTTGG 59 40463703 40467280 GACTGACTGGTACAGCCAG 60 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 3 2 2 105 6 27155931 27189840 ACCACAATCGGCTATGGTC 60 27155844 27155865 TCTGGAACATGACTAGTGTGAG 60 NA Rattus norvegicus 81 Prl6a1 ENSRNOG00000017089 ENSRNOT00000022944 1 1 1 82 17 42708065 42708083 AAGAGACCTTACTGCCTGC 59 42707018 42708019 GGAATACACCCAGCCTCTG 60 NA Rattus norvegicus 81 Olr596 ENSRNOG00000060685 ENSRNOT00000080503 1 1 1 60 3 76036032 76036051 ACTCTTGTGATTCCAATGCT 58 76036074 76036092 CCTTCACATCCTTGTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4m ENSRNOG00000001017 ENSRNOT00000001344 3 1 1 80 12 2413054 2413078 GTGGTTCCAGGTATTCTATTATCAG 59 2412737 2413018 TCTGCTTCGTATATTCTGCCA 59 NA Rattus norvegicus 81 LOC691422 ENSRNOG00000007076 ENSRNOT00000009270 1 1 1 60 7 15852607 15852627 TTTGAGTGTAAGGAACTGGTG 58 15852567 15852588 CCATATCTTCCCAACATTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520,ENSRNOT00000052315,ENSRNOT00000078619 3 3 3 80 1 220857897 220857915 CCTATGGGACCTTCCTGTG 59 220857957 220859651 ACTCATCGATATCACTGCAGG 60 NA Rattus norvegicus 81 Olr1734 ENSRNOG00000058776 ENSRNOT00000047035 3 1 1 60 20 1737151 1737171 TTCTCTTCACCTACATCCGTC 59 1737191 1737211 GCAATGATTCTGTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000092196 2 1 2 124 5 107853571 107853589 TTCCTGGACACGCTAATGG 60 107849050 107853486 ATTCTTCACCTCGCAATATCAC 59 NA InUTR Rattus norvegicus 81 Zfp853 ENSRNOG00000030579 ENSRNOT00000074138 3 1 1 146 12 13324040 13324060 TATTCCTCTTAGCACAGCCTG 60 13324168 13326676 CACCACTGCTACCTGAGAG 60 NA Rattus norvegicus 81 Hectd1 ENSRNOG00000006905 ENSRNOT00000008459 3 1 1 80 6 72541857 72547158 CACATATAACCTCCAGATACTGAC 58 72541800 72541821 CGGTCTATTAATGCAGTTTCAC 58 NA Rattus norvegicus 81 Ephx2 ENSRNOG00000017286 ENSRNOT00000023385 2 1 1 80 15 42760492 42761912 AACCAGTGATGATATGGGTCTC 60 42759342 42759361 GGATCTTCTGGAGTTCCCAC 60 NA Rattus norvegicus 81 Zfp192 ENSRNOG00000053635 ENSRNOT00000088280 3 1 1 80 17 45088373 45089260 AAATATGTTCTCCCTGGATGGT 59 45089297 45089319 TGGATTCTGGGAGATATTACCTG 59 NA Rattus norvegicus 81 Cflar ENSRNOG00000012473 ENSRNOT00000016730 1 1 1 82 9 65563144 65563162 GGAACACCATGGCATTCAG 59 65568453 65569178 CTTCATGTATGTGCGGAGG 58 NA Rattus norvegicus 81 Spink3 ENSRNOG00000013464 ENSRNOT00000018110 3 1 1 81 18 38239526 38241986 GTTTAGCAGGTAACCCTCC 58 38238004 38238022 TAAATCCTGGGACATCCCA 58 NA Rattus norvegicus 81 AABR07057961.1 ENSRNOG00000048334 ENSRNOT00000073584 1 1 1 60 7 96195953 96195976 GAAACTATGAAAGCCAGAAGATCC 60 96195992 96196013 ATTTGTGTTCTCTTAGGGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpi1 ENSRNOG00000015290 ENSRNOT00000020647 1 1 1 80 4 157330200 157330219 GTTAGACGAAAGGGAAGCTG 59 157329723 157330159 CAGTCCTTCACATTATCTGCG 59 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239,ENSRNOT00000079819 2 2 2 80 6 21091714 21092838 GGAATTCCAAATCACAGCCA 59 21091653 21091671 GTACCACTTCTGAAGCCCA 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000076359,ENSRNOT00000018147 1 2 3 80 X 62674148 62674415 CTGAATTTGCTGGAGAGCTG 59 62674087 62674109 CGCCATCTTCAAACTCTATAACC 60 NA Rattus norvegicus 81 Rfx5 ENSRNOG00000021012 ENSRNOT00000068528 1 1 1 80 2 196124488 196124509 TCCAAGAATGGTGTAGAGAACC 60 196124548 196124923 TTCTAGCTCTTTAGGAGGCTG 59 NA Rattus norvegicus 81 Epcam ENSRNOG00000015667 ENSRNOT00000021135 1 1 1 80 6 11294667 11294688 TGAGAATGAGAATGGTGAATGC 59 11294361 11294626 CACTTGGATGCCAGTTTGG 59 NA Rattus norvegicus 81 Pabpc5 ENSRNOG00000003354 ENSRNOT00000004462 2 1 1 60 X 92131691 92131710 TATCTGGCACATGAATGGAG 58 92131730 92131751 TTTGAATCGGCCAACATATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asxl2 ENSRNOG00000011908 ENSRNOT00000015827 3 1 1 81 6 27887973 27887991 TCTCCAATCAGCACCTCTC 59 27888036 27889522 TTTCCTTCCCATAGGGCAG 59 NA Rattus norvegicus 81 Kcnab1 ENSRNOG00000056697 ENSRNOT00000077973 1 1 1 80 2 155925247 155925269 GATGACAATTGCCTATGAGAGTG 60 155925309 155927142 AGAATCACCTCAGCCTTCC 59 NA Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 3 1 1 71 2 54962608 54962626 ATCTTACTCATCGCCACCT 58 54953400 54962573 GTTGATGAACACTCGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Gpr176 ENSRNOG00000005971 ENSRNOT00000007882 2 1 1 80 3 110046057 110049620 CCTGGACAGGTACTATTCAGTC 60 110045998 110046019 ATGTACATCACTAGTTCCCGAG 60 NA Rattus norvegicus 81 Shisa2 ENSRNOG00000012521 ENSRNOT00000016826 3 1 1 60 15 39949109 39949128 TGTACTCAACTGTCAGCAGG 60 39949151 39949169 AGTATGCAAGTACTGCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 2 1 1 60 10 64175219 64178041 AGACGCAGATAAACATCACAG 59 64178062 64178081 GTGGAAAGATGAAGAAAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 1 2 2 80 10 63762600 63762747 GAATTGGAAGCAAGAACTTGTC 59 63762785 63762806 CACTTGAACTTGACAGTAACCA 59 NA Rattus norvegicus 81 Fzd7 ENSRNOG00000016119 ENSRNOT00000021569 3 1 1 60 9 66307104 66307125 TTCATGGTGCTTTACTTCTTCG 59 66307146 66307164 TGAGGGAAAGAATGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000074990 2 1 2 80 6 95388209 95388836 TGGAGAGTTCACTAAGACCAG 59 95388149 95388167 ACAAGGATTAGCTGCACAC 58 NA Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 1 2 2 80 3 148804541 148804559 TACAAGAGACCACTGAGCC 59 148804603 148809500 CATGATGTTCTCTGCCCTG 58 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 1 2 2 80 18 29504374 29504670 ACTGCGATGATGACTTGTG 58 29504312 29504331 CATCACGGATCTTTCTCCAG 58 NA Rattus norvegicus 81 Aldh8a1 ENSRNOG00000014907 ENSRNOT00000020015 3 1 1 81 1 16914827 16914845 CACGTATCGGATTGCACAG 59 16914890 16916111 TCAAACCAGCAATTCCCAC 59 NA Rattus norvegicus 81 Cnpy4 ENSRNOG00000027175 ENSRNOT00000033288 2 1 1 80 12 19334191 19334294 CCACTGAAACTGCTTGTCTC 59 19334337 19334355 CCTCTTCCTCTGTCTCCTC 58 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770,ENSRNOT00000019309 1 3 3 80 1 193257046 193260840 GCCAAACAAGAAGGAACCC 59 193256984 193257006 CTGGATGATAGGTTCAATCACTG 59 NA Rattus norvegicus 81 Ybey ENSRNOG00000021365 ENSRNOT00000038953 1 1 1 94 20 12917785 12919042 TTCATGAGAATCTGAAAGCAGG 59 12919093 12919115 GAAGATATACTCCACTCCTAGGA 58 NA Rattus norvegicus 81 Ly6d ENSRNOG00000026133 ENSRNOT00000036268 1 1 1 80 7 115994017 115994041 CAGTGACAACTGTAGGAATATTCAG 60 115993814 115993979 TTCAGAGGCTCCACTTTGG 60 NA Rattus norvegicus 81 Clpsl2 ENSRNOG00000038807 ENSRNOT00000059292 1 1 1 60 20 5792469 5792488 TAAGTCCCATGTAGGCATGG 59 5794131 5794149 ACACAGGATGTTCAGGCTC 60 NA DesignNoJunction Rattus norvegicus 81 N4bp3 ENSRNOG00000021731 ENSRNOT00000032386 3 1 1 132 10 34999078 34999582 CCTTTACTCAGGTGCTCGA 59 34998964 34998982 ATAAACAGCTGCAGCTGGA 60 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 1 2 2 80 4 114962584 114964202 TCATGGTGGATGATCTCTTCAG 60 114964241 114964261 GAAATTCATCAACTCCTGCGA 59 NA Rattus norvegicus 81 Gramd1c ENSRNOG00000047327 ENSRNOT00000071065 1 1 1 80 11 62611298 62628034 ATTGCTAGATAAGAGCCTGAC 57 62628075 62628094 GCGTTTAATCCTAGTTCGGT 58 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 1 2 4 132 3 57584412 57607548 AACATGTGGGATCACATGC 59 57572289 57572308 CCCAGTATTTGTTAGCAGCA 58 NA Rattus norvegicus 81 Olr1739 ENSRNOG00000052839 ENSRNOT00000084853 1 1 1 60 20 1809980 1809999 CCTTGGTAACTCCCACTCTG 60 1810016 1810040 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1739 ENSRNOG00000052839 ENSRNOT00000084853 2 1 1 60 20 1809984 1810003 GGTAACTCCCACTCTGAACC 60 1810020 1810044 CGAACTCTTAACATCCCTATTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk1c10 ENSRNOG00000046297 ENSRNOT00000045756 1 1 1 85 1 99892277 99892298 CATCAATGAATACCTATGCGGG 59 99891363 99892237 CATGGTAATAGTTGCTATAGCAGTG 60 NA Rattus norvegicus 81 Cdc42se1 ENSRNOG00000060538 ENSRNOT00000086849 3 1 1 88 2 196406558 196407675 GATGGACTTGCCATGACAG 59 196407727 196407745 TACAAGGCCCTAGAGTTGC 59 NA Rattus norvegicus 81 RGD1359334 ENSRNOG00000021656 ENSRNOT00000064238 1 1 1 80 2 196414478 196414496 GGAAACGTGTCAGGATTGG 59 196412054 196414437 TTCTTTCTATTGGTTGCGTCTC 59 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 2 2 2 80 10 37071946 37071964 AGGTGTACTGCCATCTTCC 59 37072007 37072419 CACCCAAGTCCGTCTTAGAG 60 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857,ENSRNOT00000017914 1 2 2 80 1 218443821 218444677 TGCCATAAAGTACCGATCC 57 218443759 218443778 CACACGTTCGAGTAATACCA 58 NA Rattus norvegicus 81 AABR07067499.1 ENSRNOG00000038911 ENSRNOT00000059478 2 1 1 80 9 49448145 49448163 CACTCCTAACTTGGACACG 58 49445667 49448103 ACAGTCGCTGTAATATGTCTC 58 NA Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000080654,ENSRNOT00000010377 3 2 2 61 4 78074630 78074649 TAGAGATGAGAGCACACTGC 59 78073847 78073865 TACCTTCTTTCTGGCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 2 2 2 80 18 51578129 51578147 AAGGCAAGACTTGGAAGGA 59 51578191 51578866 TCGGTCACATGGAAGTCTC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634,ENSRNOT00000051480 1 2 4 80 20 2059773 2059912 TCACACTGAGATGGAAACC 57 2059955 2059974 CAATGATGACAAACCCAAGG 57 NA Rattus norvegicus 81 Myo1b ENSRNOG00000048152 ENSRNOT00000068433 1 1 1 80 9 54672806 54672824 AAGAGCGTTCAGTTTCCGA 60 54672867 54726270 GCATAATAAGCCTGAGCCAC 59 NA Rattus norvegicus 81 RGD1560917 ENSRNOG00000034128 ENSRNOT00000043351 3 1 1 60 8 91821104 91821125 ACTAACAACCTGGAGAAATACG 58 91821145 91821164 ACAATTGGAACAGTTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn20 ENSRNOG00000023531 ENSRNOT00000030132 1 1 1 60 1 44447222 44447243 CAGAAAGCCACAAATATGAACC 58 44447263 44447282 AACATCGCTGAAATGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr233 ENSRNOG00000046869 ENSRNOT00000049607 1 1 1 60 1 171209312 171209334 CTTATTTCTGGGCATCTATCTGG 59 171209274 171209295 AACAAGGAACATGAGAAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000050922,ENSRNOT00000077111 2 2 2 60 9 49480245 49480263 CAATGTGTTCTCGCAGACC 59 49480286 49480305 GTTCTTGAAACTGAGCTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 1 2 2 80 17 45441709 45445167 TACGTACCCTGAACTGAACAC 60 45441649 45441667 AACTGGTTGCATGGAAAGC 59 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000023383 2 1 2 80 19 40978322 40978340 TGACCTCCAAGTCAACCAC 60 40966952 40978278 CCTTTGGTATTGGGAGGGT 59 NA Rattus norvegicus 81 Nt5c ENSRNOG00000003650 ENSRNOT00000004853 1 1 1 80 10 104053266 104053288 ATGGGAGACCTCATTGATGAC 60 104053097 104053115 GCAGGTGAACAAGATGTGC 60 NA Rattus norvegicus 81 Taar4 ENSRNOG00000029877 ENSRNOT00000047810 3 1 1 60 1 22559032 22559053 AAGACTTTGAGCATAGTCATGG 59 22558993 22559011 TCAAGACGAAGAAGGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mthfd1l ENSRNOG00000019582 ENSRNOT00000026564 1 1 1 80 1 40572802 40583340 TGTGCCCAGTGATATTGAG 57 40583384 40583402 GCAAGCAATCCTATCTCCT 57 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 3 2 2 81 3 57389833 57389852 GGAAGCGAGATTTACTGGAG 58 57376325 57389790 ATTTGTTGAAGCTTTCGCTC 58 NA Rattus norvegicus 81 RGD1562400 ENSRNOG00000046628 ENSRNOT00000075318 1 1 1 60 1 172322226 172322245 TTGCTCCTTTGGTTGAACTC 59 172322185 172322205 AATGAGGTAACAACTACAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl21c ENSRNOG00000011591 ENSRNOT00000015492 3 1 1 81 9 50755632 50759069 CAGGACCCTCAGTAGAGTC 58 50755569 50755588 TAGCTGGCATAGTCTGTAGG 58 NA Rattus norvegicus 81 Olr742 ENSRNOG00000052629 ENSRNOT00000085154 3 1 1 60 3 79132883 79132902 TATGAGACCTTCCTCCACCT 59 79132842 79132861 GATGACCGTGTAGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr9 ENSRNOG00000048161 ENSRNOT00000074194 2 1 1 116 8 114916214 114917033 TTCCATCATGGTTCTCTGTC 57 114917112 114917130 AGTTCACAGGGTAGGAAGG 58 NA InUTR Rattus norvegicus 81 Clec11a ENSRNOG00000019138 ENSRNOT00000025949 1 1 1 80 1 100293304 100293322 GGGAAGGAATGGGAAGGAG 60 100293098 100293264 CTGGAGATTCTTCAACATCAGTG 60 NA Rattus norvegicus 81 LOC685520 ENSRNOG00000030351 ENSRNOT00000045504 2 1 1 117 1 243108464 243108483 GAGGAAGAAGAGGAAGACGA 59 243108129 243108147 GAGTGAGTTGTGTACAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 2 2 9 85 20 2083047 2083514 AGGATCCTGAGGTTTGGTG 59 2082980 2082998 CAGAGTGCTTTGCTCTCCT 60 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408,ENSRNOT00000084180 1 2 2 103 17 45516409 45517536 TACCTTCTTGAAGCGCTCC 60 45517603 45517621 CAAAGTTCCAGCGGATGTC 59 NA Rattus norvegicus 81 Hook2 ENSRNOG00000003682 ENSRNOT00000035987 2 1 1 80 19 26118541 26118563 CCCAGAATTCCATACTCTAAGGT 60 26118599 26118688 CTCTTCTCATAGTCCATCTCCAG 60 NA Rattus norvegicus 81 Slc44a3 ENSRNOG00000011723 ENSRNOT00000055711 1 1 1 80 2 225090279 225090299 GTTCACCTTCCGATTCATCTC 59 225088533 225090238 CCACAGACAAACAGCAATCC 60 NA Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 3 2 2 80 6 132255119 132255139 CCTGTTGTGAGAGTCAATGTC 59 132255179 132258409 GGACATCAGGAACTTCTTGAC 59 NA Rattus norvegicus 81 Lhcgr ENSRNOG00000016712 ENSRNOT00000022481 1 1 1 80 6 12528756 12528777 ATGAATAACGAGTCTGTCACAC 59 12527073 12527456 TTGAGACCCAGAATTGCCT 59 NA Rattus norvegicus 81 Hint1-ps1 ENSRNOG00000000622 ENSRNOT00000000772 1 1 1 102 10 40208359 40208377 CATCCGCAAAGAAATCCCG 60 40211357 40211376 GGGTATCACCAGAAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Pacs1 ENSRNOG00000020350 ENSRNOT00000027632 3 1 1 80 1 220516586 220516604 AAGTCATCGAGGGCATCAG 60 220516414 220516544 CAACTCCATCAATGGACACTC 59 NA Rattus norvegicus 81 Tceal6 ENSRNOG00000046390 ENSRNOT00000074255 3 1 1 60 2 102370360 102370379 TTACAGGACAGGCATGTGAG 60 102370319 102370338 CCCTTGTCATATCTGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat5b ENSRNOG00000024954 ENSRNOT00000064410 2 1 1 80 10 105915711 105921950 GTATCTGGAAGGGCAAGGA 59 105921994 105922012 GGCTCTCATAGTACACGGT 59 NA Rattus norvegicus 81 Spata20 ENSRNOG00000003273 ENSRNOT00000004377 3 1 1 80 10 82208116 82208137 GTTGGATGAGGGATATGATGAG 58 82207692 82208076 AGGAAGTTCAGAATCACAGG 57 NA Rattus norvegicus 81 Calr3 ENSRNOG00000013260 ENSRNOT00000018018 2 1 1 80 16 19097858 19103819 GAAAGACAAAGGCCTGCAG 60 19103863 19103881 CCTTTGTTGCTGAATGGCT 59 NA Rattus norvegicus 81 Pi16 ENSRNOG00000000525 ENSRNOT00000000632 2 1 1 84 20 6926754 6926778 CGAGGAGCATGAATATTACAATCTC 60 6926820 6930010 GCTCCACACTACCTGAGTG 60 NA Rattus norvegicus 81 Hsd17b14 ENSRNOG00000020949 ENSRNOT00000028436 1 1 1 80 1 101542370 101543320 TCAGGAAGGAGATTTACAGACTC 59 101543360 101543378 CCGGCATTATTCACCACAC 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000087547,ENSRNOT00000051249,ENSRNOT00000087919 2 4 4 80 X 54266178 54267831 TTTGTCAAGTCCAAGACAGG 58 54266117 54266135 TTTCACATTGTCGAGGAGC 58 NA Rattus norvegicus 81 Rgs4 ENSRNOG00000002773 ENSRNOT00000003774 2 1 1 80 13 88057825 88058139 CCTGATTAACCATGAATGTGGAC 60 88057767 88057788 CAGAAGTCAATGTTCTCCTCAC 59 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621,ENSRNOT00000088306 3 2 2 82 12 52069980 52070168 CCAGAAGACAGCAGATGGT 59 52069916 52069934 TCTGGTCAATGTGGTCCAC 60 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 3 2 2 81 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410304 219410324 CGATTCTAGAATGTTCCGCTC 59 NA Rattus norvegicus 81 Cfap52 ENSRNOG00000037718 ENSRNOT00000005066 2 1 1 82 10 54486431 54491576 AAATTCAGCTTGGGAGTGTC 59 54486368 54486386 AAGATCAACAAGCCAGCTC 58 NA Rattus norvegicus 81 AABR07065559.1 ENSRNOG00000052017 ENSRNOT00000078113 1 1 1 191 6 134627649 134627667 GATTTCTTCAAGCAGGCCC 59 134627825 134627843 CTGGTACTTGGTGACCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0611.1 ENSRNOG00000051144 ENSRNOT00000076698 2 1 1 60 X 60458588 60458606 CAAGCCAACACAGAAAGGA 58 60458546 60458566 GTGCTGTCACCAACATTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1868 ENSRNOG00000047298 ENSRNOT00000075472 1 1 1 60 20 1323217 1323236 TTTCACATACATCCGTCCTG 58 1323259 1323277 CACCATCCGATCCTCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r79 ENSRNOG00000047337 ENSRNOT00000041588 1 1 1 80 9 9254141 9262853 CATTTATCCACGGATCAGTCTC 59 9254082 9254106 GAATTCTTATTGATCTCCTCAGTGG 60 NA Rattus norvegicus 81 Olr404 ENSRNOG00000045690 ENSRNOT00000049590 1 1 1 60 3 16117251 16117271 AGTATCTGAGTTCATCCTCCT 58 16117292 16117311 AAAGTACATGCCTTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0040.8 ENSRNOG00000056715 ENSRNOT00000086520 3 1 1 60 20 1931080 1931098 CCTCTCCTTCTTGGACCTC 59 1931122 1931140 GAGGTTGAACAGCATCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink1 ENSRNOG00000013410 ENSRNOT00000017969 2 1 1 89 18 38183277 38185703 TTTAGCAGGTAACACTACAGCT 60 38181742 38181761 ACAGGATCATAATCCCTGGG 59 NA Rattus norvegicus 81 Gtf3c5 ENSRNOG00000010981 ENSRNOT00000015068 1 1 1 80 3 7151616 7151636 CTGTCAAGTCTAACGTCAGTG 59 7150206 7151578 GGCCTGTTATCATGTAATAAGCC 60 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000087015,ENSRNOT00000091085 2 2 2 60 3 77709533 77709551 CTCCCTGTTGCTTGTTTCC 59 77709491 77709509 TTCAGAACTGTGGGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 2 1 2 109 2 181899922 181899942 GTAAACTGTACTTCTGGTTGC 57 181899803 181899851 AGAGATTCAAGGGACAGGA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07014487.1 ENSRNOG00000039548 ENSRNOT00000060618 1 1 1 60 14 17809291 17809309 CTGTGTTGGAAGGAGTGGA 59 17809249 17809268 AGTTTACACCTCCTAGACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arnt2 ENSRNOG00000013017 ENSRNOT00000017636 3 1 1 80 1 146423175 146431229 AACGTCAAGCAACTTCAGC 59 146423113 146423136 CTGAGACAAGTCATATGATGACAG 59 NA Rattus norvegicus 81 Nkx6-2 ENSRNOG00000017748 ENSRNOT00000054887 1 1 1 86 1 211923087 211923105 AGACCAAGTACTTGGCAGG 59 211922826 211923037 TCTGGAACCACACCTTCAC 60 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073,ENSRNOT00000089056 1 2 2 80 16 19391925 19391943 GCTCGTAAGTTGGTCATCC 58 19390291 19391884 GTCGCTACTCTTTAGTTCAGAC 59 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 2 2 2 129 17 44757798 44757816 GTCACCAAGTACACCAGCT 60 44756638 44756659 AGTCTCCACTCAGATAAGTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 1 2 2 80 2 197752731 197754355 GGAGAAGCAGGATACACAG 57 197754397 197754417 CTTGGATATTTGGCCTTTAGC 57 NA Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 2 2 2 80 17 10469490 10469588 GAGAACTATGAGGCTCTCCTG 60 10469628 10469648 CTCTATGTCTGCTTTGGTGAG 59 NA Rattus norvegicus 81 Olr1195 ENSRNOG00000047801 ENSRNOT00000050536 1 1 1 60 8 40219806 40219825 CCCATGTACTTCTTCCTCAG 57 40219765 40219786 TAATGACAGAGGAGTAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkce ENSRNOG00000015603 ENSRNOT00000020959 3 1 1 80 6 9938450 9938468 AAGGGATTCTGAATGGCGT 59 9938512 9943754 CCAACTCCTGCAGGATCTC 60 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 3 1 1 117 3 81509498 81510705 CAGCTGAGTTCCAGAAGAC 58 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pla1a ENSRNOG00000057153 ENSRNOT00000077727 3 1 1 80 11 64907486 64907507 ATGTGGACTACTTTGTCAATGG 59 64907545 64909886 AGATCAAGTAACTGTAACCTGC 58 NA Rattus norvegicus 81 Mycn ENSRNOG00000051372 ENSRNOT00000084924 1 1 1 95 6 38224073 38226146 CGACTCAGATGATGAAGACGA 60 38223998 38224017 GCCTTGTTGTTAGAGGAGGA 60 NA Rattus norvegicus 81 Cdon ENSRNOG00000011789 ENSRNOT00000016248 3 1 1 80 8 36690421 36690442 TTATGGTCCTCATTCTTCTGGT 59 36690479 36692403 GATCATATTTCTGTATGGCGCTC 60 NA Rattus norvegicus 81 LOC100910235 ENSRNOG00000047720 ENSRNOT00000073468 1 1 1 80 9 4326103 4326121 CATGTAAAGGGATGGTGGG 58 4324681 4326061 TTTAGGGTCCTCTTTCATGTC 57 NA Rattus norvegicus 81 Atp1a4 ENSRNOG00000032378 ENSRNOT00000064601 3 1 1 80 13 90618830 90623143 GGGATTAAGGTAATCATGGTAACAG 60 90618774 90618793 TTCTGAAATGATGCCCACAC 59 NA Rattus norvegicus 81 Cnot6 ENSRNOG00000054891 ENSRNOT00000084509 2 1 1 80 10 35157854 35157875 CAACCAGTTACGAGTTCTACCT 60 35156519 35157816 GTAAGTGGATTTCCTTTCAGGC 60 NA Rattus norvegicus 81 Cnot6 ENSRNOG00000054891 ENSRNOT00000084509 3 1 1 80 10 35156435 35156457 CTCGATAATTTGTCAGGTACTGC 60 35156282 35156304 TGTCGGTTCTTGTAACATCCA 60 NA Rattus norvegicus 81 Emg1 ENSRNOG00000012828 ENSRNOT00000017334 3 1 1 85 4 157223820 157223839 AGTGACATTCGAGAGTTGGT 59 157223448 157223772 TACTCCACACTGACCTTGC 59 NA Rattus norvegicus 81 Spr ENSRNOG00000015455 ENSRNOT00000020749 3 1 1 81 4 116915429 116915766 TCATCAACAATGCAGGCAC 59 116915366 116915385 CAGTAGTTGTTCACCTCAGC 59 NA Rattus norvegicus 81 Lce1m ENSRNOG00000009581 ENSRNOT00000012691 1 1 1 87 2 193334963 193334981 ATCTACTCCTGTGCCTGAG 58 193334520 193334538 GATCTTGCATTTGGGAGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mrpl46 ENSRNOG00000018547 ENSRNOT00000067172 1 1 1 85 1 140475891 140475909 CGTTACACTCGCACAAGAC 59 140475107 140475842 TATCGGCTTCTGTTTCCCG 60 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 1 2 2 80 14 6674564 6675268 TTTCTGATGAACAGTATCCCGA 59 6674505 6674523 TGATAGCCTCATCGGACTC 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000084548 3 1 3 219 20 2099783 2099803 TACCTCTTCTCCACTCTTCTC 58 2099406 2099424 CATATAGCCTCGGATGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217 1 1 2 92 10 89908302 89908320 AGGCAGAATCGTGAGATCG 60 89904863 89908246 GGATAGAGTCTTGCCCTCC 59 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 1 2 2 80 X 62840332 62840350 CTCCTGAAGCTGATGACTG 58 62836933 62840289 TGATCTTGTCCTGTTTAGCC 58 NA Rattus norvegicus 81 Pank1 ENSRNOG00000018944 ENSRNOT00000067822 1 1 1 80 1 253122072 253128673 TGTGCACTGAATGAGAATATCG 59 253122013 253122031 CAGCAACTTCATCGAGACC 59 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000087573 2 1 2 81 1 220047523 220047541 CTTTGTACACATGGAGCGG 59 220042757 220047480 CATTCGTTTGCCTTGAAACTC 59 NA Rattus norvegicus 81 Alg1 ENSRNOG00000002883 ENSRNOT00000067932 1 1 1 80 10 10547829 10547847 GCACAACTATGGCTACTCC 58 10545834 10547786 TTCTCATACCATTTGGCCAG 58 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829,ENSRNOT00000066313 1 2 2 81 17 43477721 43480893 CCTTAATCAGGATCCAGAATATGC 59 43477663 43477681 GTAGAAAGCCAGGCATGTC 59 NA Rattus norvegicus 81 Zbtb9 ENSRNOG00000026799 ENSRNOT00000000574 2 1 1 90 20 5566662 5566897 CAAGGTGTGACCCTAGTCTC 60 5566950 5566968 AAAGGAGTCGAAGCATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Efcab10 ENSRNOG00000010730 ENSRNOT00000014252 2 1 1 86 6 52705840 52705961 TGTGCAGTATAAAGAAGCCCT 60 52706009 52706027 TCCAGAGTGATCGCATGTC 60 NA Rattus norvegicus 81 G2e3 ENSRNOG00000004232 ENSRNOT00000005670 3 1 1 80 6 72110511 72110639 ATTGCCTACACTTCAGATTTCC 59 72110678 72110698 CAAGCAGTCAGTAACTGTCAC 59 NA Rattus norvegicus 81 Olr289 ENSRNOG00000031903 ENSRNOT00000046290 1 1 1 60 1 212836431 212836450 AACCCAAGTCTTCACATTCC 58 212836473 212836491 CAATGTCCAACAGAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364912 ENSRNOG00000004947 ENSRNOT00000006697 3 1 1 114 7 15026537 15027660 AAACTAAGTGGTCAAGTGGT 57 15026442 15026461 CTCCTTGTAAGGAGTTCTGG 57 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 1 3 3 80 2 265116063 265116081 TCTTAACCTGACCCAGCTC 59 265113108 265116020 CGCAATTTGACAAGTCTTCC 58 NA Rattus norvegicus 81 Tie1 ENSRNOG00000020173 ENSRNOT00000027414 3 1 1 80 5 137306827 137306846 AGTTCTGTGCAAACTAGGAC 58 137306567 137306786 GCAATATACAAGTAGCCTCGG 59 NA Rattus norvegicus 81 LOC100911999 ENSRNOG00000060167 ENSRNOT00000073800 1 1 1 60 8 41987969 41987987 GTGATGGGAAACTTGTGCT 58 41988010 41988029 TGGGAGTGTGAAGATTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfxn3 ENSRNOG00000015442 ENSRNOT00000021171 3 1 1 80 1 264799507 264799823 TCCTATCACTGTGCAGCAG 60 264799867 264799885 GACTTGAGTCCCAGAGCAG 60 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 1 3 3 80 9 10657659 10658708 ATCTACCAGGTAGAGTTTGAGG 59 10657600 10657619 GGGCAATTCCTCTTCAAGTG 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 3 3 3 80 9 10658946 10658967 ACATTCTATGAGGTCAACTTCG 58 10658805 10658905 CAGACAGTCTCTGCTTGTG 58 NA Rattus norvegicus 81 Mvb12a ENSRNOG00000017949 ENSRNOT00000024413 3 1 1 87 16 19973946 19974098 TATCCCAGAGAACCCTCAG 58 19974149 19974167 GACTGTAGAGAAGCCTGGT 58 NA Rattus norvegicus 81 Fam19a4 ENSRNOG00000005830 ENSRNOT00000067881 3 1 1 80 4 129213148 129228683 GTGTTGAAGCTTCCATTGTG 58 129213087 129213107 GAAGCACTTTACAGTCCTCTC 59 NA Rattus norvegicus 81 Mettl22 ENSRNOG00000002714 ENSRNOT00000003700 1 1 1 82 10 7237362 7237380 GATGTCCACCTGTACACCC 60 7234458 7237316 AACTGGGACAGGAAGACTG 59 NA Rattus norvegicus 81 Sh3bgrl ENSRNOG00000002280 ENSRNOT00000042827 3 1 1 84 X 80304029 80304047 GATGCCTTCTTTGAAGCCC 59 80304094 80309916 CTTCTGCTTCCTTTGAACCA 58 NA Rattus norvegicus 81 Olr1311 ENSRNOG00000048548 ENSRNOT00000047759 3 1 1 60 8 43382398 43382417 ACAGCTCCAAAGATGTTGTC 59 43382439 43382458 ATCCCTTGAAAGAGATCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggt1 ENSRNOG00000047697 ENSRNOT00000074533 2 1 1 80 20 14021173 14021371 CATCAACCTCTACTTTGGCTC 59 14021113 14021132 GAGCTGAAGTCATCCATCTC 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 2 1 5 177 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80530906 80531280 CTCTATCTCCTCTACTGTGCC 59 NA Rattus norvegicus 81 AABR07051733.2 ENSRNOG00000057344 ENSRNOT00000050573 3 1 1 60 3 20479943 20479964 TGCATCTCTGGAAGAAATTGTC 59 20479904 20479923 CCAATTACCAATGTCCTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000004058 1 1 2 80 10 61780651 61780672 TGTCAAGGAGATATCTCTAGGT 57 61780713 61780980 CTTCAGATACCAACTGCGA 57 NA Rattus norvegicus 81 Tomm70a ENSRNOG00000001640 ENSRNOT00000002238 3 1 1 80 11 45494360 45496155 AGGAGTGTTTAGAAGATGTCAC 58 45494301 45494321 CTTTATCAGCTAACAGCATGC 58 NA Rattus norvegicus 81 AABR07027902.1 ENSRNOG00000050847 ENSRNOT00000074309 1 1 1 80 17 48438240 48438258 CAGAGACTGAAGGAACACC 58 48444117 48444995 TTCTATACCCATGGCATGTC 57 NA Rattus norvegicus 81 Ushbp1 ENSRNOG00000023485 ENSRNOT00000040393 3 1 1 80 16 19791082 19791102 CTTCGAGACTAAACCTGAGCT 60 19790827 19791040 CAATCCTCCTTGATCCGGT 59 NA Rattus norvegicus 81 Slc6a16 ENSRNOG00000025220 ENSRNOT00000033882 1 1 1 80 1 101250723 101250741 GCCACATATTCCACTTCGT 58 101250782 101250957 GTTCACATTCAGGATCAAAGTC 58 NA Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 2 2 2 129 14 46022152 46024971 GTTGAAAGCCCTGTCACTC 59 46025064 46025082 GTTCAACAACACCTCCCAC 59 NA Rattus norvegicus 81 Casp8ap2 ENSRNOG00000006487 ENSRNOT00000079656 1 1 1 80 5 47868187 47868210 CTGGATTTGTATGAAGAGATCCTG 59 47868245 47868835 CCCATATTCTATCTGCAAGTCAC 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290,ENSRNOT00000016000 3 2 2 80 1 247125940 247133291 TTCCAGAAAGCCAAAGCAG 59 247133333 247133353 TCTTACTCTTGCCTTGAAAGC 59 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000088760 1 1 2 88 X 105577016 105579577 CCATGATTTCCAGAATGAACAC 58 105579626 105579644 TAGGGCTTCTCGTTACTCC 58 NA Rattus norvegicus 81 AABR07048271.1 ENSRNOG00000033271 ENSRNOT00000047780 1 1 1 83 5 69851383 69860121 CATGTTCCCAGCAGTTTGG 59 69860166 69860186 ACCAGAGCATCTTTCTGAGAC 60 NA Rattus norvegicus 81 Emp3 ENSRNOG00000021104 ENSRNOT00000028656 2 1 1 108 1 101902643 101902873 CTCTGGACAAGTCCTGGTG 60 101902553 101902571 TCACTGACGTTACTGCAGG 60 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075896,ENSRNOT00000075125 1 2 5 82 15 10289861 10291573 TTAAAGCGGCCTCTAATTGTG 59 10289799 10289821 CTTCTTATTCAGCTGAGTCTGAG 59 NA Rattus norvegicus 81 Rxra ENSRNOG00000009446 ENSRNOT00000012892 3 1 1 80 3 6292048 6293436 CTTCAACCCTGACTCTAAGGG 60 6293476 6293496 GCTTCTAGTGATGCATACACC 59 NA Rattus norvegicus 81 Dhx57 ENSRNOG00000054272 ENSRNOT00000090688 3 1 1 80 6 2944637 2947785 GTGACCAGGTATGTGTTACAG 59 2944577 2944595 CCTGGCTTTAAGCCTTTCC 59 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000078278,ENSRNOT00000009687 3 2 2 80 3 79591278 79591297 CACCAGTCCAGAATCTACCA 59 79591340 79593653 GCACCAATTGCAGTTTCTC 58 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542,ENSRNOT00000081171,ENSRNOT00000078765 1 3 3 80 8 1676601 1676621 AACCAAACTAATGGATCGGTG 59 1654227 1676559 GCAGAGGTGTACTTTGGAG 58 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108,ENSRNOT00000000640 3 2 2 80 20 8345477 8346877 CATGCTCAAGTGTAAGAGCG 59 8346920 8346938 TCATAGGGATTGGCTCTGG 59 NA Rattus norvegicus 81 Vsnl1 ENSRNOG00000005345 ENSRNOT00000007609 1 1 1 80 6 37007195 37007217 CAACATGTATGATCTGGATGGTG 60 37002607 37007157 ACCATCTTGTAGATAGCCTCG 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 1 2 2 80 4 148233573 148247007 TCTTTAAGTGGTGGCTCTG 57 148247051 148247069 GATTTGTTGCCCAGAAGGA 58 NA Rattus norvegicus 81 Ppp1cb ENSRNOG00000004612 ENSRNOT00000006190 1 1 1 80 6 23563754 23563774 CTCGTGAAATCTTTCTTAGCC 57 23561541 23563714 ACTGTCCATGAATATCTCCAC 57 NA Rattus norvegicus 81 Igfbp3 ENSRNOG00000061910 ENSRNOT00000088355 3 1 1 81 14 87461539 87461559 CAAAGTTGACTATGAGTCCCA 58 87461066 87461496 GCAGGGACCATATTCTGTC 58 NA Rattus norvegicus 81 Ftl1 ENSRNOG00000020843 ENSRNOT00000028315 3 1 1 80 1 101448772 101448790 GAGAAGAACCTGAACCAGG 58 101448508 101448729 CAAGAAGTCACAGAGGTGAG 58 NA Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000041237 2 1 2 80 18 40586488 40587355 CTGCATTTGTCACTACTGGG 59 40596079 40596098 AGAGTCCTGGCTTCTAACAG 59 NA InUTR Rattus norvegicus 81 RGD1306626 ENSRNOG00000008585 ENSRNOT00000011377 1 1 1 80 4 27617663 27617681 CAGCGAACTACATTCTCCT 57 27615266 27615369 CTGCTTTGTAGAAGACGGA 57 NA Rattus norvegicus 81 Ralgapa2 ENSRNOG00000036964 ENSRNOT00000015637 1 1 1 80 3 140599060 140599080 ATAACCAGTCGTCTCCATCTC 59 140598778 140599021 GAGTTGTAGCCTTAAATAGCCA 58 NA Rattus norvegicus 81 Slc39a13 ENSRNOG00000011981 ENSRNOT00000016191 1 1 1 80 3 79888489 79890528 AATCAGAAGCTGGAGCCTG 60 79888427 79888445 AGTGCAGAAACACATTGCC 59 NA Rattus norvegicus 81 LOC302228 ENSRNOG00000047403 ENSRNOT00000071967 1 1 1 60 14 96300843 96300861 AACTGCCAACAAATCCCTC 58 96300883 96300903 CCGTAGACACATTCAATTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bloc1s4 ENSRNOG00000054224 ENSRNOT00000091068 3 1 1 60 14 79014235 79014253 ACAAACTAGAGGCCTTCGT 59 79014277 79014295 ACTTGCTCCTCCATTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 1 2 2 80 17 54375303 54380669 TAGTACAAGCTGGTTTGGG 57 54380713 54380731 GATGCCATTTCAATCGCTG 58 NA Rattus norvegicus 81 Mylk3 ENSRNOG00000017546 ENSRNOT00000023657 2 1 1 80 19 27426562 27426581 TCACAAGGCAGATCTGTGAG 60 27426622 27427971 GTATGTTCTCTGGCTTGAGGT 60 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 2 2 2 85 4 113952879 113953038 TGAACTCTGGTGGTTCTGG 59 113952812 113952831 TGAGTTTAGCTCTTCGGTGG 60 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 3 2 2 86 4 113952880 113953040 TATGAACTCTGGTGGTTCTG 57 113952813 113952831 GAGTTTAGCTCTTCGGTGG 58 NA Rattus norvegicus 81 Npm3 ENSRNOG00000017622 ENSRNOT00000023963 3 1 1 80 1 265505633 265505936 CTTCTTCGGTTGTGAGCTC 59 265505571 265505591 AGCACATGTTCTGTATCATCC 58 NA Rattus norvegicus 81 Bst2 ENSRNOG00000059900 ENSRNOT00000091906 2 1 1 108 16 19941284 19941302 GAAGGTGTCTCAAACCCAG 58 19939314 19941215 TGTGGTAGAAATTTCCTTTCCC 59 NA Rattus norvegicus 81 Ndufa11 ENSRNOG00000048320 ENSRNOT00000070862 2 1 1 87 9 10338079 10338097 GAAGCCTACAATGAGACCC 58 10335199 10338028 TTATTAGGCCACAAAGGCC 58 NA Rattus norvegicus 81 Mis18bp1 ENSRNOG00000023093 ENSRNOT00000091202 1 1 1 80 6 86883652 86885637 CAGAAACAAAGAATCCAGTTGC 59 86883593 86883613 TACTGGATTCCTGTCCATAGC 59 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000083658 3 1 2 62 4 82126494 82126715 AATCAGGAAGCAGACCCAC 60 82126450 82126468 GCTGGAGAAGACGTCTCTG 60 NA DesignRelaxed Rattus norvegicus 81 Rn60_5_0814.26 ENSRNOG00000013609 ENSRNOT00000076568 2 1 1 89 5 77428430 77428453 GAGCAATGTTCTATAGGAAAGGTG 60 77423848 77428382 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Spc25 ENSRNOG00000006731 ENSRNOT00000008837 1 1 1 80 3 55441281 55441303 GTATTGACCCTAAGAATCCTGAG 58 55439156 55441243 AGTCGGACACTTCATATTCCT 59 NA Rattus norvegicus 81 Nrbp1 ENSRNOG00000050570 ENSRNOT00000074938 3 1 1 80 6 26491114 26491134 ACAATCATGTGAAGACTTGCC 59 26490761 26491073 TAACGTTTGTGACTTCTCCG 58 NA Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 2 1 1 61 1 11965334 11968514 GTTGGTGGAGCGATTTGTC 60 11968538 11968557 CTAGTTAGCATGCCAGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Tuba3a ENSRNOG00000032967 ENSRNOT00000052352 1 1 1 80 4 179908969 179908989 GCTATTGCTACCATCAAGACC 59 179909026 179910330 GTAGTTAATACCCACCTTAAAGCC 59 NA Rattus norvegicus 81 Hmga2 ENSRNOG00000042460 ENSRNOT00000065137 2 1 1 95 7 65261912 65261930 AAAGCAGAGACCATTGGAG 57 65160040 65171783 TGTCTCTTCAGTCTCCTGAG 58 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476,ENSRNOT00000005446 1 2 2 80 18 41375209 41375229 TCATTTACAGGAGCCTTGGAG 60 41374463 41375169 CAAAGTACGGCTCTTTCAACC 60 NA Rattus norvegicus 81 LOC684545 ENSRNOG00000049759 ENSRNOT00000073464 2 1 1 80 1 73100716 73100734 TCTTGGACAAGGGTGTGAG 59 73095476 73100673 AGTTCTCCAACGATACCCTC 59 NA Rattus norvegicus 81 Grb2 ENSRNOG00000003990 ENSRNOT00000005347 1 1 1 88 10 104196479 104201858 CCTGTCAGTCAAGTTTGGA 57 104196409 104196427 TAAACTTCACCACCCACAG 57 NA Rattus norvegicus 81 LOC100911575 ENSRNOG00000037607 ENSRNOT00000057030 3 1 1 124 1 214428534 214428552 CGTTGCCTCTTATCTGCTG 59 214428638 214429335 CACTGATGACCTTGTTGAGTC 59 NA Rattus norvegicus 81 Amdhd2 ENSRNOG00000006460 ENSRNOT00000008537 1 1 1 81 10 13530673 13530773 CATGTTGCCTTTCCACCAC 60 13530610 13530628 GAAGATACAGTGGCCTGGG 60 NA Rattus norvegicus 81 LOC679782 ENSRNOG00000042852 ENSRNOT00000062030 3 1 1 80 1 1618810 1619096 CTTTGAGTCCAAGGGTAATCAC 59 1619133 1619155 CAGCATCCATCCATGAATATTCC 60 NA Rattus norvegicus 81 Smc4 ENSRNOG00000010274 ENSRNOT00000013931 1 1 1 80 2 165622926 165622945 GAAGCAAAGTGATGAGAGGA 58 165622985 165623564 GGCATTCCATCTTATTTACCTC 57 NA Rattus norvegicus 81 Cd300a ENSRNOG00000057058 ENSRNOT00000085262 2 1 1 80 10 103446959 103448792 CAGTCAAAGCTGATAAGCACC 60 103449202 103449224 GATTGACATACTGGGATTCACTC 59 NA Rattus norvegicus 81 LOC103690271 ENSRNOG00000052885 ENSRNOT00000091678 2 1 1 60 1 213258887 213258906 CATGGACATTATCTGCACCT 58 213258927 213258947 CTCAGATAGTAGACCAACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 2 2 2 80 10 29177341 29177359 GAGACTTGCAGAGGGTCTC 60 29177401 29179210 CATTGTCATATGCTACCAGCA 59 NA Rattus norvegicus 81 AABR07006823.1 ENSRNOG00000045862 ENSRNOT00000075459 1 1 1 80 1 258477110 258477131 TGCCTTACAAAGTAGTGTTTCC 59 258477032 258477069 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Ppp1r26 ENSRNOG00000027193 ENSRNOT00000036601 3 1 1 60 3 7036077 7036096 CGAGACTTAGAGGAAACCGA 59 7036116 7036137 TCCTTACAGGTTCCTATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc4a3 ENSRNOG00000020138 ENSRNOT00000027337 2 1 1 80 9 82744328 82744346 GAAGAGGGAGAGTCTGAGG 58 82744388 82744486 ACTTCCAATGGAGAACTTTGC 59 NA Rattus norvegicus 81 Rhbdl2 ENSRNOG00000026592 ENSRNOT00000034839 2 1 1 115 5 141500691 141500709 TCTATGCCTTGATGGGTGG 59 141502329 141504332 CATGTCTGAGGCAACTATCAG 59 NA Rattus norvegicus 81 Aig1 ENSRNOG00000010753 ENSRNOT00000046539 2 1 1 80 1 7999773 8038458 GACCTTCATTGATCTGGTTATCC 59 7999715 7999733 CCTCTGGTCAGAAGACTGG 59 NA Rattus norvegicus 81 Sgpp1 ENSRNOG00000005175 ENSRNOT00000006913 1 1 1 80 6 98683479 98683499 TGATTCTCATTCCCTGTTGGA 59 98677740 98683437 CAATGACGTCCAGGATGGA 60 NA Rattus norvegicus 81 Ttc1 ENSRNOG00000003980 ENSRNOT00000005304 3 1 1 80 10 29357488 29359524 GAGAGGAGATTATGTGGAAGCT 60 29357429 29357450 GATCGATCTTTCTGGAAACAGG 59 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 2 2 2 80 4 133318859 133318879 AACAAATGGTTTGCCTGAGAG 60 133318917 133319612 GAAGAATCACTGTGTCCTTTCTC 60 NA Rattus norvegicus 81 Slc24a1 ENSRNOG00000052051 ENSRNOT00000077152 2 1 1 83 8 70413546 70413564 CATCACCTTCCTGGGATCC 60 70412632 70413499 ATGGTTTCACCAACCTGGT 60 NA Rattus norvegicus 81 Slc24a1 ENSRNOG00000052051 ENSRNOT00000077152 3 1 1 84 8 70413550 70413568 TTGTCATCACCTTCCTGGG 59 70412635 70413502 GTTTCACCAACCTGGTGAG 59 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000077882 2 1 2 80 10 103544133 103544391 CCTTTGAGGTTTAGGGTTACAG 59 103546106 103546126 CTGTTCATGACTTCTCACCTC 59 NA Rattus norvegicus 81 Rpo1-3 ENSRNOG00000000954 ENSRNOT00000001261 2 1 1 89 12 9694509 9704216 ATGGGCTGGATGAAGTGTC 60 9694438 9694456 TTGCTCTTTATGGGAGGGC 60 NA Rattus norvegicus 81 Rn60_14_0792.1 ENSRNOG00000031296 ENSRNOT00000042870 3 1 1 60 14 79113547 79113567 CCCTGCCCATTATAAGATCTG 58 79113587 79113607 GCATTCTTTAGGAGTGTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcat2 ENSRNOG00000020956 ENSRNOT00000028474 3 1 1 80 1 101570851 101570869 GAGAAGTCTTCGGCTCAGG 60 101570913 101571005 GAATGTGGAGTTGCTTGCC 60 NA Rattus norvegicus 81 Gspt2 ENSRNOG00000048817 ENSRNOT00000076205 2 1 1 80 X 63959425 63961122 AGCCTCAAGAGAAATTTCACAG 59 63959366 63959384 TTCAGGAGTGACACGACTG 59 NA Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 1 2 2 80 10 10992247 10992916 AAGAAGGAGCTATTTAAGCTGG 58 10992188 10992206 CTTGTTGCGATCCATTTCC 57 NA Rattus norvegicus 81 AABR07002623.2 ENSRNOG00000051483 ENSRNOT00000080422 2 1 1 103 1 77806398 77806535 TAAGCCCAAGTATCTCCAGC 59 77806133 77806151 CTTCAAAGAACCCGGTGAC 59 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000083580 1 1 2 81 14 84237520 84237539 TCTTGTCACTGACTGCAGAG 60 84237582 84244979 ATCTCAGGAAACCACTTGGG 60 NA InUTR Rattus norvegicus 81 LOC102551819 ENSRNOG00000025970 ENSRNOT00000006672 1 1 1 122 9 84550609 84550632 CCAAAGATGAGACCAGACAC 58 84550717 84550735 TAGTTCTTCCTGCTGGCTC 59 NA Rattus norvegicus 81 Olr1256 ENSRNOG00000049225 ENSRNOT00000072605 1 1 1 60 8 42409199 42409217 AATGGCTCTTTGGTGTTGG 59 42409239 42409259 TTTGGAGTTTAGGCTCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5g ENSRNOG00000026578 ENSRNOT00000031244 2 1 1 83 6 26627584 26628077 ACAGTTGTTGGTTCAAGACAC 59 26627521 26627539 CACAGCATAAACAGCAGCA 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458,ENSRNOT00000080386 2 2 2 89 X 104430003 104430021 AGCCTGTACTGCGATACTG 59 104393045 104429951 GTCATTCTGGTCATGGTCAG 58 NA Rattus norvegicus 81 Fam154a ENSRNOG00000048197 ENSRNOT00000071318 1 1 1 84 5 104830141 104830159 TCATCAAACCTCGGGACAG 59 104772385 104830099 CAGGGTACATAATCAACTTTGTAGG 60 NA Rattus norvegicus 81 Rapgef1 ENSRNOG00000014316 ENSRNOT00000060977 3 1 1 80 3 8304015 8304034 GAAGGTCAACTTCTCCAAGC 59 8304076 8304639 ATTTCATAGTGCACCTGCTG 59 NA Rattus norvegicus 81 Actn3 ENSRNOG00000019745 ENSRNOT00000026812 2 1 1 80 1 220131206 220131224 ATGTCAACAAAGCCCTGGA 60 220130843 220131164 TCCCGTCAACAATTTCTTCAG 59 NA Rattus norvegicus 81 Ubash3a ENSRNOG00000001167 ENSRNOT00000001541 1 1 1 80 20 9961536 9970547 TAAGCACAGGACATACACG 57 9970591 9970609 CCATTTCTCCTGCTACTGG 58 NA Rattus norvegicus 81 Slc12a2 ENSRNOG00000015971 ENSRNOT00000021921 3 1 1 80 18 52938648 52938669 CGAATTATTGGAGCCATTACAG 58 52938710 52939915 GATCTGAGCCTTTGCTTCC 59 NA Rattus norvegicus 81 Phf23 ENSRNOG00000017657 ENSRNOT00000024079 2 1 1 80 10 56608310 56608328 AAGATGGAGATGGCAGCTC 60 56608368 56608498 ATGAGTCATCACCTGATTCTACC 60 NA Rattus norvegicus 81 Phospho2 ENSRNOG00000007979 ENSRNOT00000010489 1 1 1 85 3 56031047 56031065 AGGCTGGGTTTCTACACTG 59 56031548 56033438 CGAAGACTTCTTAATTCCAGCA 59 NA InUTR Rattus norvegicus 81 Tmem98 ENSRNOG00000021316 ENSRNOT00000037072 1 1 1 80 10 68176435 68176456 CATTCTGGAGAATGAAGACTGG 59 68177696 68179521 GTGTGACAAATCTTCAAGATGG 58 NA Rattus norvegicus 81 MGC105567 ENSRNOG00000038955 ENSRNOT00000040116 3 1 1 93 18 55685628 55685648 CGTGAAGAGACTAGAGAACAC 58 55685703 55702890 AACAAAGGCCCAGAAACTC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 RGD1560860 ENSRNOG00000050332 ENSRNOT00000072723 3 1 1 81 17 57508112 57511994 CTAAGACTCGAGGGAGAAGC 59 57508050 57508068 TCTGGGTTAGGAAGGAAGC 59 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622,ENSRNOT00000012308 3 2 2 80 8 69079618 69084114 ACCACATTGGAACAAAGAGC 59 69084157 69084175 GGTAGCTCTTCTCCTGCAG 60 NA Rattus norvegicus 81 Olr780 ENSRNOG00000048669 ENSRNOT00000052368 3 1 1 60 3 103140448 103140468 TGTGGACCAAATGTGTTAGAC 59 103140408 103140428 AGGCTAATCTGATAAACCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 1 1 1 60 7 140467185 140467203 TACGCTTCCTCATGAACCT 58 140467227 140467660 ATCTCAGAGAACACGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Lct ENSRNOG00000003681 ENSRNOT00000004908 3 1 1 80 13 45024007 45024025 CCAAATCCAAACTGTTGGC 58 45020495 45023964 AAAGAACAAGATGGGCTCTC 58 NA Rattus norvegicus 81 Rn60_2_1089.2 ENSRNOG00000047587 ENSRNOT00000074664 2 1 1 60 2 89036252 89036272 CGTATCTTACCCATGGTTCTC 58 89036212 89036233 TTTGTATTTCGGACCACTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000035976,ENSRNOT00000036233,ENSRNOT00000073253 2 4 5 81 5 101801092 101855462 GGGAAGCTGTTAAGAGTCTC 58 101855505 101855524 AGATGTCTATTGAGCTGACG 57 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002728 3 1 3 80 14 22809442 22822302 TCCACAGAAGGTTCTTTGGA 59 22822344 22822363 GGGATCCATTTGTACAGACG 59 NA Rattus norvegicus 81 AABR07066648.1 ENSRNOG00000047075 ENSRNOT00000073673 1 1 1 80 9 12115067 12115086 AAGTGTGACTTTGAGAGGGA 59 12115129 12115864 GACATCCAGCCTGTAGTCC 60 NA Rattus norvegicus 81 Hjurp ENSRNOG00000022911 ENSRNOT00000051065 2 1 1 80 9 95361815 95361833 ACAACCAACCCTTTGAGGA 59 95359486 95361771 CCCAGACTCTCAATCCCTG 59 NA Rattus norvegicus 81 Scnn1g ENSRNOG00000017842 ENSRNOT00000024057 1 1 1 80 1 191711803 191711824 AATCAACATGAGCTATTCTGCC 59 191711865 191713062 GTGAAGTTCCTGGCATCAC 59 NA Rattus norvegicus 81 Fam220a ENSRNOG00000024605 ENSRNOT00000029692 1 1 1 143 12 13044629 13066938 GCCTGCAGGTTCATATTGAG 59 13044505 13044523 TTGTGACTGCTTCACACTG 58 NA InUTR Rattus norvegicus 81 Rab36 ENSRNOG00000001311 ENSRNOT00000001772 1 1 1 80 20 14558644 14558664 ACTTCAGGACCTAGAGAAGAG 58 14558169 14558606 GGTACCTCTATTCGTATTAGGTC 58 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 2 2 2 105 2 198114380 198114398 AGGAGGACAGCTATCTTGC 59 198112898 198114311 GTAGAGGTGGAAGCCACAG 60 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 2 2 2 80 3 46513064 46513727 TGGAGATCAAATTCACTGGAG 58 46513004 46513026 CTATCCATTCTTCCTTTCCTTCC 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000080481,ENSRNOT00000066419 2 3 8 60 13 68709840 68709861 TCTTTAATAGTGACAGTGACCC 58 68709878 68709900 GGATTGAGATCATCCAACTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909608 ENSRNOG00000047964 ENSRNOT00000072360 2 1 1 81 1 705964 705983 CATCAGAAAGAAACAGCCGA 59 706024 707187 CCATATCTGCTGTATCATTGGC 59 NA Rattus norvegicus 81 Srp9 ENSRNOG00000003211 ENSRNOT00000004297 1 1 1 80 13 100555853 100555871 TGGTTCTCAAGTACAGGCA 59 100555912 100558432 CTGTTCTGTACACCAAACAGAC 60 NA Rattus norvegicus 81 Lrrc29 ENSRNOG00000025231 ENSRNOT00000059663 2 1 1 80 19 37268376 37269524 CTCTTCACTGAAGGATGCC 58 37268314 37268332 CAGGAGGACAAGTCTAGCA 58 NA Rattus norvegicus 81 Olr1122 ENSRNOG00000006439 ENSRNOT00000008423 1 1 1 60 8 18762849 18762868 GATGATAAAGCACTGAAGCC 57 18762808 18762828 TGGTTAACAAGTACATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 1 2 2 93 1 101379417 101379562 CTAGAGTGAACTATGACACAACAG 59 101375212 101375232 CGTTTACTGTAGACCATGTGG 59 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310,ENSRNOT00000005905 1 2 2 81 6 48756737 48760649 TCCAGAAATTCTTGCCATGC 59 48760692 48760711 GTTGCTATTCACATGCCCTC 59 NA Rattus norvegicus 81 Ccdc64b ENSRNOG00000003457 ENSRNOT00000004638 1 1 1 80 10 12986332 12986434 AGGCAGAGAATCAGATGCT 59 12986477 12986496 CTTTGTCCACTTCTTCACGA 58 NA Rattus norvegicus 81 LOC684509 ENSRNOG00000050514 ENSRNOT00000074950 3 1 1 61 2 210115940 210115958 CCTCGCTGTAATTATGCCC 59 210115897 210115916 CCTTGTTGATCATGCTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hesx1 ENSRNOG00000014133 ENSRNOT00000019113 1 1 1 81 16 2635110 2635736 CGACTCAGAGAAAGACGGT 59 2635781 2635799 GTGATCCACTGGACAAGGA 59 NA Rattus norvegicus 81 Mir3562 ENSRNOG00000047717 ENSRNOT00000070927 2 1 1 60 10 109246827 109246845 CAGGCTTGCTGTGATTTGG 60 109246785 109246805 CTAGAGATAGGGCTGTGAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3562 ENSRNOG00000047717 ENSRNOT00000070927 3 1 1 61 10 109246788 109246806 GGACTCACAGCCCTATCTC 59 109246745 109246764 CTGGATCTCAGGCTCTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000045495,ENSRNOT00000081386,ENSRNOT00000067422 2 4 4 80 7 143125337 143125356 TCAAGGCTCAGTATGATGAC 57 143125398 143125651 TTATCTCCTCACACTTGGTG 57 NA Rattus norvegicus 81 Zfp174 ENSRNOG00000007655 ENSRNOT00000010059 1 1 1 85 10 11933232 11933250 TCTCATGAGCAGCTGAGTC 59 11929891 11933183 CTGGAGGACTCTGTCTCAG 59 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000088687 1 1 2 81 6 39362125 39363156 AATCACGGATCTCAGTTCCT 59 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA InUTR Rattus norvegicus 81 LOC499235 ENSRNOG00000031368 ENSRNOT00000045415 3 1 1 84 1 171997321 171997343 GACCACCAGAAATATACAGTGAC 59 171996574 171997277 TCTTTATCCCTGTTCCGGC 60 NA Rattus norvegicus 81 Foxf1 ENSRNOG00000049906 ENSRNOT00000073858 3 1 1 88 19 53013296 53014613 CAGAATTGCAAGGCATCCC 60 53014665 53014683 GGCCATGGCATTGAAAGAG 60 NA Rattus norvegicus 81 Csta ENSRNOG00000023953 ENSRNOT00000039075 1 1 1 87 11 67563988 67566793 TCATTAAGATGGATGTGGGAC 58 67566840 67566860 CCAGTCAGTTTCAAATCACTG 58 NA Rattus norvegicus 81 Fam208a ENSRNOG00000014750 ENSRNOT00000074069 2 1 1 80 16 3100542 3101297 CATTCACAAGGTACCTGGC 59 3101338 3101359 ACATCATCAAGGCTATCAACAC 59 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921,ENSRNOT00000003249 1 2 2 80 13 103287900 103289470 GAGCAGGAAACAAGATTATCCA 59 103289509 103289529 CCCATTTCTTACATCCAGGAC 59 NA Rattus norvegicus 81 Arfgap2 ENSRNOG00000014429 ENSRNOT00000057161 2 1 1 81 3 80083370 80083473 GGCACTGATCTTTGGATAGAC 59 80083513 80083534 GCTCTGTGAAGAAATCAGAGTC 59 NA Rattus norvegicus 81 Olr399 ENSRNOG00000060108 ENSRNOT00000089297 3 1 1 60 3 15856459 15856477 GTACTTCTTCCTCAGCCAC 58 15856501 15856519 TGGAGCTGTGACTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssbp4 ENSRNOG00000019698 ENSRNOT00000026713 1 1 1 80 16 20587464 20587683 CCATCCATGAACATGGGTC 58 20587816 20587834 AGATGAGGAAGAGTACGGG 58 NA Rattus norvegicus 81 Kif5b ENSRNOG00000017466 ENSRNOT00000023861 2 1 1 80 17 54206106 54206125 AAAGAAGAGACAGCTGGAGG 60 54206166 54207132 TCATGGACTTTCTCTTGTGCT 60 NA Rattus norvegicus 81 Commd6 ENSRNOG00000038012 ENSRNOT00000057830 3 1 1 64 15 86139064 86139082 ATCATTCTGGCCAAGTGAG 58 86136565 86139039 GTAGAAATTCTGAAACTGTGGG 57 NA DesignRelaxed Rattus norvegicus 81 Rn60_5_0814.30 ENSRNOG00000051103 ENSRNOT00000076250 3 1 1 60 5 77359416 77359438 CATGACAAACTCTAGATGTGCTG 60 77359378 77359401 GTCTCAACTTTCCCAATTATGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj14 ENSRNOG00000021056 ENSRNOT00000028591 2 1 1 157 1 101808393 101808411 CTTCAGTGAGAACGCAGTG 59 101806969 101806987 GGTCCAGTGGGATGTACTC 59 NA DesignNoJunction Rattus norvegicus 81 Tnfrsf12a ENSRNOG00000003546 ENSRNOT00000004842 3 1 1 68 10 12996625 12996643 CTGGTTTCCTGGTCTGGAG 60 12996483 12996501 CACCAGTCTCCTCTATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Pea15 ENSRNOG00000046996 ENSRNOT00000070812 3 1 1 80 13 90583280 90583302 AAGAGTGAAGAGATCACTACAGG 59 90582039 90583241 GGAGAGGTTGTCTTTGTCCA 60 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892,ENSRNOT00000025871,ENSRNOT00000065483 1 3 3 80 18 57743565 57755230 CGGCATAGTTGATGTGATAGAG 59 57755270 57755289 GGCTTGTTGACCATGAAGAC 60 NA Rattus norvegicus 81 Olr1392 ENSRNOG00000046072 ENSRNOT00000051001 1 1 1 60 10 34645497 34645518 CAACTCTTCCATCATTGCTCTC 60 34645537 34645557 GAAGTACATTGGTGTTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 1 2 2 81 5 48775561 48775579 ACAGCTGGGTCTTCATGAG 59 48775624 48776832 ATACTATTGCACACGGCCA 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075993,ENSRNOT00000075879 3 4 6 111 15 36972745 36972763 GAACTATACCTGGCCCACC 60 36970622 36972671 AACCTATCATTGTGCACTGC 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393,ENSRNOT00000057986,ENSRNOT00000058000,ENSRNOT00000089234 3 5 5 120 1 79685717 79688713 GTTCCTTCACGTGAAATCCTC 59 79685617 79685635 GTGAACACGGAGAAGAACG 59 NA Rattus norvegicus 81 Cpped1 ENSRNOG00000015118 ENSRNOT00000045047 1 1 1 81 10 3735507 3773588 TTCACCAGAGCAGGTATCC 59 3773631 3773651 CCATGTCAAGATTCTGGTAGG 58 NA Rattus norvegicus 81 Ado ENSRNOG00000000639 ENSRNOT00000000791 2 1 1 80 20 22448225 22448244 CGAAGACCTTAACATCGCA 58 22448289 22448307 ATGTGCATGTAAGTGACCG 58 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000051565 3 1 2 80 12 16042785 16042803 CAGCTTCTGGATCCAGGTC 60 16042944 16044742 AGTAATGACCCAGCCAGTG 59 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 3 2 2 80 1 259063844 259065491 CCATACAGCTGGTAAACACC 59 259063783 259063801 CTCGAGGGATGATCAGGTC 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000081078 1 1 4 80 5 104581552 104594255 GTCATGTGGAGGAGGTGTC 60 104594299 104594317 CACAGGTTCTCATCAGCGA 60 NA Rattus norvegicus 81 Mtrf1 ENSRNOG00000047106 ENSRNOT00000072969 2 1 1 80 15 61668957 61668975 CTAAGGAGAAGTGTGACCG 57 61669017 61669211 ATTGTTGGCAGATATCACCTC 58 NA Rattus norvegicus 81 Srp14 ENSRNOG00000007512 ENSRNOT00000009866 1 1 1 82 3 110246450 110246992 GTGAATAAGTTTCAGATGGCCT 59 110246389 110246409 CTCTTGTTCTTCTTGTCCCTC 58 NA Rattus norvegicus 81 Olr1424 ENSRNOG00000055773 ENSRNOT00000041113 2 1 1 60 10 44146283 44146302 TGGTCATCCTCTTCTATGGT 58 44146242 44146260 GTGTGGAATGAGGTAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcsh ENSRNOG00000011535 ENSRNOT00000015967 2 1 1 85 19 49522791 49523808 ATGTTACGAAGACGGTTGG 58 49522724 49522743 TCTCATACGCTTCTTCACTC 57 NA Rattus norvegicus 81 Zfp691 ENSRNOG00000007398 ENSRNOT00000009691 3 1 1 60 5 138218714 138218732 CTGTACATCACCGAACCCA 59 138218672 138218690 CTCTTTCCACACTCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686013 ENSRNOG00000005533 ENSRNOT00000007407 1 1 1 80 19 25125612 25125705 CTAACCCTTTGAGCATCTCC 58 25125748 25125766 AGTACCGGAAGATGGACAC 59 NA Rattus norvegicus 81 Olr1332 ENSRNOG00000058207 ENSRNOT00000080493 2 1 1 88 8 43816101 43816119 TATGTCTTTGCCTTGCTGG 58 43803762 43816049 CCCAGGAAGAAGTACATGG 57 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000027502 1 1 2 80 1 225826304 225826323 CTGTGAAGCAATTCAAGCAG 58 225825560 225826262 AATATTGCCTCCGTCATCAC 58 NA InUTR Rattus norvegicus 81 Wdtc1 ENSRNOG00000008377 ENSRNOT00000011311 2 1 1 83 5 151491612 151491630 TACCAGTTCCGCTACTGTG 59 151490594 151491566 GATGTACTGAGCATTGCTGC 60 NA Rattus norvegicus 81 Rnf168 ENSRNOG00000043345 ENSRNOT00000002395 3 1 1 80 11 71736024 71736042 GACGAAGTGAGATGGAGGA 59 71732392 71735982 CGTAGTTACTGTTGATGCTGG 59 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109,ENSRNOT00000048141 3 2 2 80 3 112480919 112480939 CTGGATTTGGATGGAGATGTC 59 112480981 112485202 CTCTTCCAGCACTCTCCTC 59 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000055872 3 1 2 87 10 34284413 34284433 TTCAGTGTCAATGATGCTCTC 59 34284479 34284505 ATATAAGTCCCACTTTGGTCCT 59 NA InUTR Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 1 1 1 60 15 57505579 57568090 TAAAGTATGTGTCTAGTAGACGGG 59 57568109 57568127 TGGAAGCTACCTTGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 2 1 1 92 12 12330355 12330373 TAACATCCACAGTCGAGCG 60 12322626 12330299 TATTCCAGGACACCAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 2 2 2 136 10 29193607 29193625 GTGAAATGCAGACCATGGG 59 29191728 29192621 GATGGTGGAGATCTCCACC 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867,ENSRNOT00000077612 3 2 2 80 11 65112717 65112738 TATCTGTTCTCGGTACTACAGG 59 65110198 65112681 GCAGACCATACATCTATACTAGAC 58 NA Rattus norvegicus 81 Uba52 ENSRNOG00000019974 ENSRNOT00000027073 2 1 1 80 16 20670003 20670022 CAGAGACTGATCTTTGCTGG 58 20670064 20670873 CAAGGTGGACTCTTTCTGGA 59 NA Rattus norvegicus 81 Usp42 ENSRNOG00000001059 ENSRNOT00000001404 1 1 1 80 12 12865508 12866098 CTAAGATCCCGAGTCAAGTG 58 12866139 12866159 AATCTCCAGTGTTATGTCCAG 58 NA Rattus norvegicus 81 Kpna2 ENSRNOG00000015329 ENSRNOT00000020795 1 1 1 80 10 95200668 95200686 AGCCATGAGAACGAGTCTG 60 95200362 95200626 TTGATCTTCCTCTTCCTCCAC 59 NA Rattus norvegicus 81 Crlf1 ENSRNOG00000020030 ENSRNOT00000060097 1 1 1 98 16 20680063 20680081 ATGAAGGACCTGACATGCC 60 20679851 20680001 CTGACCATACCACCTCAGC 60 NA Rattus norvegicus 81 Gkn3 ENSRNOG00000037782 ENSRNOT00000057350 2 1 1 86 4 119186548 119187941 AGATACCTTATTGCACCTTCC 58 119186306 119186327 CAGAAGATGACTGTCACTAGTG 58 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 3 1 2 82 12 11247500 11247520 ACAGACGACTAAGAAGGTGAC 60 11247559 11249140 GCTTCTCTATTTCTTCTCGTTCTC 59 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 1 2 2 80 1 101070016 101070034 ACCTGTATGAAAGGGAGGC 59 101070077 101071257 TCTCATAGGCCTTCATCTGC 59 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975,ENSRNOT00000036051 3 2 2 80 8 48429248 48429372 GGGATGAGAAACCAACATGC 60 48429415 48429433 TCTTTGGGAACCTCTGGAC 59 NA Rattus norvegicus 81 Larp1 ENSRNOG00000031544 ENSRNOT00000036959 3 1 1 80 10 43485678 43485698 AGATTTGGATTCTGAGAGCTG 58 43485740 43487514 GGTTCCTCTGACTTCTTGG 58 NA Rattus norvegicus 81 Plek ENSRNOG00000005214 ENSRNOT00000007044 3 1 1 80 14 100168118 100168140 CTGAGAAAGGAATCAAGGAACTG 60 100165314 100168079 CAATGACACCACTACCTGTG 59 NA Rattus norvegicus 81 Mirlet7a1 ENSRNOG00000035632 ENSRNOT00000053755 2 1 1 60 17 16417858 16417876 TGTGGGATGAGGTAGTAGG 58 16417899 16417918 TAGTTATCTCCCAGTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vpreb3 ENSRNOG00000028394 ENSRNOT00000032290 2 1 1 61 20 13657915 13657933 CTGGTTACCGACCTTTCCT 59 13657074 13657092 GCTCAGTTGAGCTTCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Nov ENSRNOG00000008697 ENSRNOT00000011904 3 1 1 80 7 94375223 94375380 CCATCTCTTAAATCAAGTCTCTGC 60 94375418 94375437 CAGGTCGGTGATATACTGGG 60 NA Rattus norvegicus 81 Pcyt1b ENSRNOG00000012358 ENSRNOT00000016669 1 1 1 80 X 62794895 62794914 TACGTGGACGAAGTCATCAG 60 62794955 62797203 AGCCACAAAGTCAATCTTGTG 60 NA Rattus norvegicus 81 Arhgap32 ENSRNOG00000008709 ENSRNOT00000011589 3 1 1 80 8 33239384 33239402 TTTGGCTGGATTCTGAAGG 58 33239443 33252452 ACTTCATCTTCCTGAAACTCTC 58 NA Rattus norvegicus 81 Mmp1 ENSRNOG00000032353 ENSRNOT00000012595 2 1 1 80 8 5704361 5704381 ACACCACTAACATTCGAAAGG 59 5704420 5704645 ATTGTCACTATGGTCTCCTCTG 59 NA Rattus norvegicus 81 RGD1561317 ENSRNOG00000031034 ENSRNOT00000045604 1 1 1 60 3 122817233 122817253 ACACTGGTAACTTACATGCCT 60 122817275 122817293 CATCCACATTGACCGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps15al1 ENSRNOG00000032866 ENSRNOT00000051114 2 1 1 60 12 11302450 11302470 AAGTGTGGAGTTATAAGCCCT 59 11302410 11302428 TCTGCCATTCCTCTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r66 ENSRNOG00000047851 ENSRNOT00000058702 1 1 1 60 4 87608782 87608802 CTAAATCCTGCTCACTCTTCC 58 87608822 87608842 GTCACTGTTACAATCATTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663,ENSRNOT00000086030 3 2 2 80 20 28775067 28775086 TACTTCATTGCTCCGACAGG 60 28772660 28775026 AATGTTCACCTTGTTGTCCAG 59 NA Rattus norvegicus 81 LOC688739 ENSRNOG00000027656 ENSRNOT00000065766 3 1 1 82 11 65610768 65610787 TGTGATGTAATGGCCATGGT 60 65610831 65611101 GGAAATGAGCTTGGTGACAG 59 NA Rattus norvegicus 81 Inmt ENSRNOG00000011250 ENSRNOT00000015316 1 1 1 80 4 85384625 85384643 CTGAAGAAGGAGCCAGGAG 60 85382539 85384581 CCATCTGCTTCTGTCTCCC 60 NA Rattus norvegicus 81 AABR07004681.1 ENSRNOG00000013711 ENSRNOT00000036482 3 1 1 81 1 149901635 149901659 GCATACTTTCACATTCCAGCT 59 149901696 149901720 CCTCAATAAAGAGGGAATATCACAG 59 NA Rattus norvegicus 81 Pfdn2 ENSRNOG00000003983 ENSRNOT00000005346 1 1 1 84 13 89725941 89740895 CGGAACAGGTAATTGCTGG 59 89740943 89740961 AGTTCCATCTCCAGCTCAG 59 NA Rattus norvegicus 81 Rab3a ENSRNOG00000019433 ENSRNOT00000026391 3 1 1 85 16 20436538 20436556 GAACAAGTGCGACATGGAG 59 20435882 20436490 CAAAGAACTCAAAGCCCAGG 60 NA Rattus norvegicus 81 Rn60_X_0689.1 ENSRNOG00000026617 ENSRNOT00000036763 3 1 1 60 X 67980777 67980795 CACATTGCTGACTTGGCTG 60 67980819 67980837 TCACATTGAAAGCTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564606 ENSRNOG00000029670 ENSRNOT00000048598 1 1 1 60 2 38231129 38231149 AATACTCTGATACGGCCTGAC 60 38231171 38231189 CATAATCAGGAGCCAAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr984 ENSRNOG00000051632 ENSRNOT00000078290 1 1 1 60 7 4714269 4714290 GAATTCCATCTACTAGCCAGAG 58 4714309 4714329 ACAATCATGTGAGAGGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amz2 ENSRNOG00000000246 ENSRNOT00000000263 3 1 1 81 10 97717966 97717986 TCTAAATGTCTGCCCTATCTG 57 97718029 97719797 CACCAGGGCTTTGTATCTC 58 NA Rattus norvegicus 81 Gabarapl2 ENSRNOG00000019425 ENSRNOT00000048998 3 1 1 92 19 44165015 44165033 TTTAAGGAGGACCACTCGC 59 44165394 44166688 TTTCTCAACGATCACCGGA 59 NA Rattus norvegicus 81 Uvssa ENSRNOG00000005122 ENSRNOT00000006841 3 1 1 80 14 82629295 82636353 TACGAGCTGAATATGGGCTG 60 82629234 82629254 TCTCCTGTACGCTACATACAG 59 NA Rattus norvegicus 81 Slc9b1 ENSRNOG00000042985 ENSRNOT00000031348 2 1 1 80 2 240570092 240570110 TTACACGGATCTGGAGGAC 59 240570153 240572064 GACTCCAACCTTCTCTTCAG 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496,ENSRNOT00000081280 3 2 2 80 10 31336596 31336616 ATGGAGTGATCATTCCGTACC 60 31334331 31336554 ATCTACCCAACAGCTGGAC 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 80 1 257517954 257544100 ATTTCTTCGCCAGAAACCT 57 257544142 257544162 ATAATTTCCATCCAGGAGCAC 58 NA Rattus norvegicus 81 Foxa3 ENSRNOG00000014256 ENSRNOT00000019219 3 1 1 76 1 79930119 79930137 GGCTCAGTGAAGATGGAGG 60 79922629 79930079 ACTGGAGAATACACCTCGC 59 NA DesignRelaxed Rattus norvegicus 81 Cnrip1 ENSRNOG00000005326 ENSRNOT00000007104 2 1 1 81 14 100217808 100217827 GTACAATCAAGCTGCTCACC 59 100217870 100220705 GAAATGTTCTCGACCTGCAG 59 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522,ENSRNOT00000010421 2 2 2 80 5 39637494 39637513 GTCCCTGACATCTATTCCAG 57 39636240 39637453 AGCGTCAAATTCTAGATAGCC 58 NA Rattus norvegicus 81 Pla2g10 ENSRNOG00000003164 ENSRNOT00000004237 3 1 1 88 10 1518466 1518487 CGATGGCTTACATGAACTATGG 59 1518072 1518417 ATGGTAGTAGCAGCACCAG 59 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 3 2 2 81 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109743 143109998 CTTTATCTCCTCACACTTGGTG 59 NA Rattus norvegicus 81 Rn60_X_0650.1 ENSRNOG00000057091 ENSRNOT00000086663 1 1 1 95 X 64915724 64915742 CTACCGGGATGATAACGGA 58 64914927 64914945 GGTAGGCATTCTTCGTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Fam50a ENSRNOG00000045790 ENSRNOT00000073104 2 1 1 80 4 104951977 104951995 GGAGGAAGAAGAGGAGGGA 60 104952038 104953792 GTGGTGATCTCTTCCCTCTC 59 NA Rattus norvegicus 81 Fstl5 ENSRNOG00000047002 ENSRNOT00000076793 1 1 1 80 2 175132787 175155502 GGATTTCAGGATGAAGTCTGTC 59 175155541 175155561 TTTGACATTAACAGCCGAAGC 60 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394,ENSRNOT00000037276 3 2 2 80 8 97549758 97552618 GATCATGAACATGGTGGCT 58 97552662 97552680 ATAATAAGGCGCACAACGG 59 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 1 2 2 80 10 11886391 11886410 TCTGTGGATACACAAGTTGC 58 11885678 11886348 TAAGAGGGAACCTATGCCG 59 NA Rattus norvegicus 81 Emcn ENSRNOG00000022910 ENSRNOT00000035700 2 1 1 80 2 242634496 242634514 CTGCTTCAAGTGACTGCTC 59 242634557 242664768 TGTTTCTGTCAGTGCTTTGC 60 NA Rattus norvegicus 81 Emcn ENSRNOG00000022910 ENSRNOT00000035700 3 1 1 81 2 242664778 242664796 AAAGCATCGGCTACAACAC 59 242664840 242671066 TGTTGGTCGTTCCTTTAGGA 59 NA Rattus norvegicus 81 Cd209a ENSRNOG00000040128 ENSRNOT00000061727 1 1 1 80 12 2347308 2347427 CCCTCTGGATGAGGAACTG 59 2347246 2347267 AATCCAGAATTTGGTTGGAAGC 60 NA Rattus norvegicus 81 Ngly1 ENSRNOG00000006143 ENSRNOT00000008289 3 1 1 80 15 10443459 10443479 CCTACAGGATTAATGCAGCAC 59 10434194 10443417 ATCACCAACAACCAGTGGA 59 NA Rattus norvegicus 81 B4galt1 ENSRNOG00000059461 ENSRNOT00000090499 3 1 1 81 5 57128475 57139100 CATCAATCAGGCTGGAGAC 58 57128412 57128432 GTCATAGTCTTTCAAGGCCTC 59 NA Rattus norvegicus 81 Ccdc166 ENSRNOG00000047521 ENSRNOT00000073835 2 1 1 127 7 117040919 117041040 CCTACAAGGAGTTGCAGCT 60 117040810 117040830 AGACTTATCATCCAGGAAGCG 60 NA Rattus norvegicus 81 Ccdc166 ENSRNOG00000047521 ENSRNOT00000073835 3 1 1 132 7 117040919 117041040 CCTACAAGGAGTTGCAGCT 60 117040805 117040826 AAAGCAGACTTATCATCCAGGA 59 NA Rattus norvegicus 81 Zdhhc16 ENSRNOG00000046530 ENSRNOT00000072181 3 1 1 80 1 261188810 261188829 GTGAGACTAGCATCGAAAGG 58 261188870 261189170 AAGGATTCCTAAACACTCTGC 58 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045329,ENSRNOT00000045821 2 2 2 82 8 107231091 107231112 GTGCACAAGATTGAATTTGAGC 60 107231151 107231450 TCTCTTCTTATCTCTTCCTTCCC 59 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261,ENSRNOT00000031173 3 2 2 76 1 84639145 84640102 GTGGGTCAGTGACATTTAGG 58 84640141 84640159 CTTCTGAGTAGCATCCAGG 57 NA DesignNoJunction Rattus norvegicus 81 Flt1 ENSRNOG00000000940 ENSRNOT00000001248 3 1 1 80 12 9185357 9185376 GTGAAGATTTGCGACTTTGG 58 9185419 9187435 GGGAAGTCGAGTATCTCCT 58 NA Rattus norvegicus 81 Mroh8 ENSRNOG00000007341 ENSRNOT00000055219 2 1 1 80 3 153374018 153381488 TGCATATTCTCACTGTGCTG 58 153373957 153373975 TGGTGACAAAGACCTCCTG 59 NA Rattus norvegicus 81 Cep131 ENSRNOG00000004430 ENSRNOT00000005977 3 1 1 80 10 109254606 109255195 CTCCCTCAACAATATTGTGAAGG 60 109254548 109254566 GAGAAGTTCTTCCGAGGCT 59 NA Rattus norvegicus 81 AABR07051730.1 ENSRNOG00000054128 ENSRNOT00000058331 2 1 1 60 3 20304051 20304069 GCAAGTCAGGGTATTAGCA 57 20304090 20304111 TAATCGTTCCATCTGGTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 2 2 2 80 7 35091080 35094605 ATGACACCAGATAAGGCTGAG 60 35094647 35094665 GCCGAGATTCGCTAATGAC 59 NA Rattus norvegicus 81 Zbtb39 ENSRNOG00000004306 ENSRNOT00000005685 3 1 1 65 7 71036613 71038300 GATTGACCTTGCTGATACTGAG 59 71038326 71038344 CAGTTTGATCCTCATGCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07071101.1 ENSRNOG00000008363 ENSRNOT00000011090 2 1 1 84 8 100260095 100260124 TTACTGGGTCTGCATCTGG 59 100260172 100260190 TGGAACATGTAGACCACGT 59 NA Rattus norvegicus 81 AABR07044935.1 ENSRNOG00000059663 ENSRNOT00000084720 3 1 1 80 20 27197955 27198550 AAACAGACAACTCAACAGCA 58 27197894 27197914 TCGATCAGCTTAGTGTTTGAC 59 NA Rattus norvegicus 81 Olr34 ENSRNOG00000030554 ENSRNOT00000042081 3 1 1 60 1 150311053 150311075 GGTGTCTGTGTTTCTTAGTTCTG 60 150311095 150311113 TTCTGAGGTTGATGGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 3 2 2 81 13 75118022 75118727 TCACTGACCAGAAGACCCT 60 75118769 75118790 GTGCCATAAGATACTGGTAGGA 59 NA Rattus norvegicus 81 AABR07061755.1 ENSRNOG00000042732 ENSRNOT00000056573 3 1 1 60 4 142453454 142453476 GAGAAAGTAGTTGGAGTGATTGG 59 142453496 142453514 TGTTGGCTACCATGATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057787.1 ENSRNOG00000047389 ENSRNOT00000074064 1 1 1 84 7 87919443 87919463 GTCTTGCCTCACAAAGTAGTG 59 87919360 87919397 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Vom2r57 ENSRNOG00000026976 ENSRNOT00000047547 3 1 1 80 7 22931532 22931943 GATGCATGCAGGTAAATGAC 58 22931471 22931492 TTCCTTGATTAACAGTCACTGG 58 NA Rattus norvegicus 81 Dhtkd1 ENSRNOG00000023587 ENSRNOT00000065978 3 1 1 80 17 76331041 76331062 TCAATAACCAGTTGGGTTACAC 59 76331099 76331627 CTACTAGCTTTCCAATGTCACTG 59 NA Rattus norvegicus 81 LOC100365798 ENSRNOG00000045865 ENSRNOT00000007690 3 1 1 60 3 76102518 76102539 CTGGCTAACATCTTCAATATGG 57 76102479 76102498 AGAATTGGACCATACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fus ENSRNOG00000023360 ENSRNOT00000031891 2 1 1 80 1 199419343 199420807 ATAAATTTGGTGGTCCTCGG 58 199422232 199422253 GCACGAAGATGGTATTATTGTC 58 NA Rattus norvegicus 81 RGD1306926 ENSRNOG00000036699 ENSRNOT00000054974 1 1 1 80 10 109542837 109544713 GACGAATAAAGACGATGGTCAC 60 109542778 109542799 TCTGCTGTAAATACTGCATACG 59 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 2 2 2 124 17 78493165 78493183 GGTGATGGAGAAGAGGAGG 59 78492251 78493077 CAAGTTCAAGCTGCTCCAG 59 NA Rattus norvegicus 81 Heatr4 ENSRNOG00000038183 ENSRNOT00000058127 2 1 1 80 6 107446642 107447883 TGGGCACTCATTATTGAATGG 59 107446582 107446602 CCTAATGTCATCGTACATGCT 58 NA Rattus norvegicus 81 AABR07002774.1 ENSRNOG00000029805 ENSRNOT00000063839 1 1 1 80 1 84686087 84686107 TACTAGAGCAGGAGAAAGAGC 59 84686147 84696364 CATAACCTGTCTCCAACTCTG 58 NA InUTR Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190,ENSRNOT00000077730 1 2 2 80 7 73291254 73293006 ATTCCATTTATCTACCGAGGTG 58 73293045 73293065 ATTAGGTGACCGTTTGTACTG 58 NA Rattus norvegicus 81 Olr584 ENSRNOG00000005742 ENSRNOT00000007553 3 1 1 60 3 75879132 75879152 TCTTGTTCAGATACACAGGTC 58 75879092 75879112 GTTCAATGAAACCAAACACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem52 ENSRNOG00000016618 ENSRNOT00000022286 3 1 1 89 5 172888658 172888799 GCACTGTGACCTCCTACAG 60 172888852 172888870 GTACCATGGAGTCAGGGTC 59 NA Rattus norvegicus 81 Ttc34 ENSRNOG00000024526 ENSRNOT00000037211 3 1 1 91 5 172262730 172263789 TTACTGCAGGGAGTAGAGC 59 172263844 172263862 GAAATCAAACATGGCGGTC 58 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 2 2 2 80 4 129493037 129493057 GAATCTCTACCTCACTCAGCA 59 129488504 129492995 CCATAAGAGCTGGTGTCCC 60 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883,ENSRNOT00000081916 2 2 2 93 20 32099566 32099585 CTCAGAGCAGAAGCTATGAC 58 32098253 32099511 TTAAGGAAATACCTCAGGCG 57 NA Rattus norvegicus 81 Bcs1l ENSRNOG00000016754 ENSRNOT00000022632 3 1 1 82 9 81869867 81869886 TACCTTCAGCATGAAAGTGG 58 81869929 81870030 CCCTGATACCAAATGAAGTGG 59 NA Rattus norvegicus 81 Plek2 ENSRNOG00000010098 ENSRNOT00000014125 3 1 1 80 6 102078029 102080306 ACCCTTCCAAAGAAGATAACAG 58 102077970 102077988 CACCATTATCCTCCAGTGC 58 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045,ENSRNOT00000092203 1 2 2 80 10 61207832 61207852 GCATCAAACTTCTTACATGCC 58 61203316 61207792 GACTGATACCTTGTAGGATGG 57 NA Rattus norvegicus 81 Olr1244 ENSRNOG00000061646 ENSRNOT00000087099 1 1 1 60 4 1584365 1584385 GTAGGATGTATGACCCAACTC 58 1584405 1584425 GAACACAGCATTCACTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Awat2 ENSRNOG00000003030 ENSRNOT00000076097 2 1 1 80 X 70227533 70256682 CCAGACAGTCATCACTGTG 58 70227471 70227489 AGCATCAACACAGTGACAG 58 NA Rattus norvegicus 81 Nfkb1 ENSRNOG00000023258 ENSRNOT00000036838 1 1 1 80 2 240792104 240792122 GGGAGATGTGAAGATGCTG 58 240789922 240792060 AAGTGTAGGACACTGTCCC 59 NA Rattus norvegicus 81 Slc26a3 ENSRNOG00000006878 ENSRNOT00000009473 1 1 1 80 6 50737090 50737113 CAAGATAAAGGAATGGCTTCTCAG 60 50737151 50739190 AATGCTAAACCTTGCAGCAC 60 NA Rattus norvegicus 81 Lipf ENSRNOG00000019448 ENSRNOT00000027969 1 1 1 80 1 252289303 252289323 CAGTCGAGGAAATACATGGTC 59 252289365 252290445 TCATCAAAGCTGAAAGCCC 59 NA Rattus norvegicus 81 Zer1 ENSRNOG00000025832 ENSRNOT00000035002 2 1 1 80 3 8676389 8678355 CAGCTGGTCAATGAGTATGTG 59 8676329 8676348 TGAGAAGAGGCTGAAGAAGG 59 NA Rattus norvegicus 81 Arsi ENSRNOG00000026060 ENSRNOT00000030966 3 1 1 130 18 56180284 56180302 GGCTCAGATATTGAGACCC 57 56180396 56184672 GTATGGATCTGGTACCTGC 57 NA Rattus norvegicus 81 Fam83e ENSRNOG00000021039 ENSRNOT00000028564 3 1 1 80 1 101706497 101709143 GATCCTACAGCTTCACATGG 58 101709186 101709204 AGGCATCTGCAATTTCTCC 58 NA Rattus norvegicus 81 Rpl23a ENSRNOG00000023344 ENSRNOT00000035657 2 1 1 80 10 65441581 65441816 TACTCTGATACGGCCTGAC 58 65441519 65441538 TTGTTGGCAACATCTAGAGC 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083,ENSRNOT00000080338 3 3 4 80 1 189389913 189389933 AAGGATACATTGGCATCAGGA 59 189389972 189391802 ATGTCTTCTCTGGGCTATTCTC 60 NA Rattus norvegicus 81 Dstn ENSRNOG00000005924 ENSRNOT00000007794 3 1 1 83 3 138046135 138047812 CATGTTCTTCTTGTGGGCAC 60 138047858 138047876 TTCTTCTTGATGGCGTCCT 59 NA Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 1 2 2 80 9 10973765 10974004 GACAACCCAGATGTGAGGA 59 10973703 10973723 CTTCTGAAGGATCTGAGAGGT 59 NA Rattus norvegicus 81 Mrpl28 ENSRNOG00000042720 ENSRNOT00000027662 2 1 1 81 10 15495958 15496713 CCAACAACGACAAGCTCTC 59 15496755 15496776 AAGATTTCACTGTAAAGCTCCC 59 NA Rattus norvegicus 81 Olfm4 ENSRNOG00000013280 ENSRNOT00000047572 2 1 1 80 15 62420241 62420260 GACCAAGCTGAAGGAATGTG 59 62420303 62427480 CTACAGCTTCCAGGAGCAG 60 NA Rattus norvegicus 81 Pitpnm3 ENSRNOG00000008323 ENSRNOT00000071764 1 1 1 80 10 58663620 58685016 ATGAGCATCAAGGAGAAGGG 60 58646151 58646171 GGGACACCCGATATAGTTCTC 60 NA Rattus norvegicus 81 Zfp213 ENSRNOG00000021872 ENSRNOT00000030704 3 1 1 172 10 12889640 12889658 GGAGCAGATCCTGGAACTG 60 12888683 12889504 CCTCTGAGAGCTCATCCTG 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 1 2 3 80 X 65083768 65087330 ACTAAGCTCTGATGATGTACGA 59 65083709 65083727 ATAAGCTCTGTTGGGTCCT 58 NA Rattus norvegicus 81 Chst14 ENSRNOG00000045997 ENSRNOT00000073587 2 1 1 60 3 110735228 110735249 CCCAGAAAGTCTACATTACCAC 59 110735270 110735288 TAGCACATCTTGAAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 1 2 2 80 1 265788833 265788851 CACGCCATATGGTAACCAG 58 265788671 265788789 TTGTCACACTCCTCTGTCC 59 NA Rattus norvegicus 81 Rn60_13_0801.3 ENSRNOG00000051352 ENSRNOT00000076569 2 1 1 60 13 75165423 75165441 TATGCCAAGGACCCTTCTC 59 75165381 75165400 GGACAAAGCCTAGAATCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb40 ENSRNOG00000022039 ENSRNOT00000033670 2 1 1 80 5 155354878 155354896 ATGTCTGTAGGGACTGTGG 58 155353303 155354837 CTTCTATGTTGTGGAAGGTGTG 59 NA Rattus norvegicus 81 RGD1563620 ENSRNOG00000028052 ENSRNOT00000033132 2 1 1 85 2 166348534 166348553 GCCTGAAGGGAAAGATTTCG 59 166348601 166349144 TGGCTATCACAAGGTGGTG 60 NA Rattus norvegicus 81 Krt79 ENSRNOG00000058340 ENSRNOT00000081518 3 1 1 80 7 143534831 143534954 CTTAAGAAGGATGTAGATGCTGC 59 143534773 143534792 GTCAATCTCTTGGATCAGGC 59 NA Rattus norvegicus 81 RGD1305733 ENSRNOG00000003198 ENSRNOT00000004346 1 1 1 80 10 3471115 3541686 CAGAACTCAGGTTCATGATGG 59 3541727 3541746 CTACCAAGTTCTGAAGCTCC 58 NA Rattus norvegicus 81 Art5 ENSRNOG00000020242 ENSRNOT00000055243 2 1 1 93 1 167194483 167195457 CCTCTGGAAGGTACAAGCT 59 167194408 167194426 CTCCATCTCCTCAGAGCAG 59 NA Rattus norvegicus 81 Alkbh3 ENSRNOG00000021678 ENSRNOT00000030784 3 1 1 80 3 82891724 82891742 CCCTGTCATTGCTTCACTC 59 82875297 82891681 TCTCCATTCTCTTCAGGTGG 59 NA Rattus norvegicus 81 Elf5 ENSRNOG00000008282 ENSRNOT00000011035 3 1 1 81 3 93360086 93363469 TCGCTCACAAGGTTATTCCT 59 93369535 93369553 CAAGCAACTGGAATCAGCA 59 NA Rattus norvegicus 81 Tbc1d13 ENSRNOG00000015970 ENSRNOT00000021431 3 1 1 81 3 8713817 8715030 CTGAAGCTGCAAGAACAGAG 59 8715074 8715092 ACAAGAACTCCTGGGACAG 59 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000014863 2 1 2 81 10 85287176 85287196 CAAGGAGAGGTCCACTGAG 59 85287113 85287132 CCTTGAAGCCTTGAGATGTC 59 NA Rattus norvegicus 81 Aif1l ENSRNOG00000009951 ENSRNOT00000013286 3 1 1 80 3 9243215 9248037 GGCGAGATTGATCTGATGTC 59 9243154 9243174 CATCTTCTTCATCTCCAGGTG 58 NA Rattus norvegicus 81 AABR07060591.1 ENSRNOG00000059195 ENSRNOT00000078254 2 1 1 89 4 82665205 82668743 TTTAACAGGATACAGGGCCTC 60 82668792 82668812 CCCTCTGAGTGTTCTTAATGC 59 NA Rattus norvegicus 81 Vom1r79 ENSRNOG00000057572 ENSRNOT00000089498 3 1 1 60 4 87982083 87982102 ACTATCTTGCTGCTTGTGGT 60 87982042 87982062 TTGAGATGATGAAGTCCACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018,ENSRNOT00000084317 3 2 2 80 1 48703310 48703329 ATTCCAAGCAGATCACTGTC 58 48703369 48705249 AGATATTGGCACCTTTGATGTC 59 NA Rattus norvegicus 81 RT1-P2-ps1 ENSRNOG00000053315 ENSRNOT00000078926 2 1 1 60 20 2542934 2542954 TACATCGCCATAAACGAAGAC 59 2542894 2542912 CTATCTGTGCTGCAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paqr3 ENSRNOG00000002035 ENSRNOT00000032130 3 1 1 80 14 14120879 14120898 TACGTGATTGCTCTTCTTGC 59 14120940 14122214 CAGGTAGTTTAGCTGTCCTG 58 NA Rattus norvegicus 81 Phldb3 ENSRNOG00000055259 ENSRNOT00000083493 1 1 1 81 1 81487601 81487619 CTCTTACACAAGCTGTGGG 58 81487663 81487764 ACAGGGTTTCTATTCCCAGG 59 NA Rattus norvegicus 81 Rgs22 ENSRNOG00000025551 ENSRNOT00000039378 3 1 1 80 7 74860706 74861960 GGAAGACATCAAAGACATCTTGAG 60 74860649 74860669 AATTTCTGCAGAAAGGTAGCG 59 NA Rattus norvegicus 81 Gimap7 ENSRNOG00000038740 ENSRNOT00000059167 1 1 1 96 4 78354395 78357313 TGTCCTGCAGAAGTCAAGG 60 78357371 78357391 TTCCCTACCAGAACAATCCTC 59 NA InUTR Rattus norvegicus 81 Rn60_13_0816.1 ENSRNOG00000051095 ENSRNOT00000076020 1 1 1 60 13 76626489 76626507 GTGGAGCAACTCTCCTCAG 60 76626528 76626549 ATTCCTGTTAGCATATGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cope ENSRNOG00000020178 ENSRNOT00000027381 2 1 1 80 16 20869631 20870613 TCGCACAGAGGAAGTATGG 59 20869569 20869588 CAAACATTCGTACAGCCTGG 60 NA Rattus norvegicus 81 Dgkg ENSRNOG00000001796 ENSRNOT00000002452 1 1 1 80 11 82130443 82149615 AAATGTTGTGTCCAAGACCT 58 82149657 82149676 ATAGATCTGTCCCATCTCCA 57 NA Rattus norvegicus 81 Naa11 ENSRNOG00000002031 ENSRNOT00000002776 1 1 1 81 14 13828452 13835277 ATTGCCTGAGCATCTCTGG 60 13835322 13835340 AGGATACTGCAGAGCACAG 59 NA InUTR Rattus norvegicus 81 Caprin1 ENSRNOG00000009152 ENSRNOT00000012428,ENSRNOT00000078616 3 2 2 80 3 93705555 93705575 CCAAACAGTGGCTATACACAG 59 93705220 93705515 ATTCTGCTGATATCCATCCCG 60 NA Rattus norvegicus 81 Zfp410 ENSRNOG00000010985 ENSRNOT00000014738 1 1 1 80 6 108037239 108038112 AGAATCCAAACCAGAGCTCC 60 108038153 108038173 GCTTCTGATTCTACTAGCCCT 59 NA Rattus norvegicus 81 Hcfc1r1 ENSRNOG00000003542 ENSRNOT00000004702 1 1 1 60 10 12994748 12994766 GACTCTTGGCCTGGATACC 60 12995267 12995286 CATGTTCTCCTCAGACAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Ncs1 ENSRNOG00000008761 ENSRNOT00000011648 1 1 1 80 3 10602571 10602589 GAAGCCTGAAGTTGTGGAG 59 10568084 10575768 ATGAAACCCTTGTACCACTG 58 NA Rattus norvegicus 81 LOC100910717 ENSRNOG00000052664 ENSRNOT00000079808 1 1 1 80 1 255519203 255520630 GAGCGAGAACAGATCACCT 59 255520674 255520692 TCCATACGCACTGATTCCA 59 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 3 2 2 80 7 27231492 27231511 GAGTGTTCATCACAGACGAC 59 27231307 27231451 GATCATCGGAATCCACAACAC 60 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 1 2 2 80 3 2937582 2937835 CTTGCACAGAGAAGATGGA 57 2937520 2937538 TCAAACGTATAGCGTCCAG 57 NA Rattus norvegicus 81 AABR07060778.1 ENSRNOG00000005630 ENSRNOT00000007437 2 1 1 60 4 93405928 93405946 TGTTGGCAAGAAATGTGCT 59 93405886 93405905 ATTCACCACCATCCGATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd59 ENSRNOG00000042821 ENSRNOT00000067085 1 1 1 82 3 94018610 94025287 TTCCACAGGTGTTAGCCTC 59 94025333 94025351 GGTTAGGAGAGCAAGTGCT 59 NA Rattus norvegicus 81 RGD1562029 ENSRNOG00000022723 ENSRNOT00000037555 1 1 1 80 9 66384344 66401210 CACTGGGACAAGCAAACAC 60 66401254 66401272 CTTCAGCCGAACATGAGGA 60 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 1 3 3 80 15 12578712 12578735 GATCGGAGAATTAATCTCCTAGTG 59 12578773 12579449 GTACTGGCTGTATCCTTCCT 59 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000042447 2 1 2 80 11 60809831 60819196 GTTGGTGACTGTTAACACTACAG 60 60809773 60809794 TTTGTCAGTGGACTAGAAGGAC 60 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000070907 2 2 3 80 4 183348593 183350540 AGAGTCAGAATCTCTGAAGGA 58 183347482 183347502 ACTTCTGTCATATAGCGTCTG 57 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203,ENSRNOT00000083171 1 2 2 80 3 57053286 57053304 CGTAAGAGGCATACCTCCA 59 57051574 57053242 TTCGGTCGAACAGATGAGG 60 NA Rattus norvegicus 81 LOC680579 ENSRNOG00000032160 ENSRNOT00000049161 2 1 1 60 14 44225530 44225548 CAGCTCACTGACTTCAGAC 58 44225488 44225508 CTTTCCGTACATACTTCTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cops3 ENSRNOG00000053943 ENSRNOT00000091471 2 1 1 80 10 46197070 46197089 CAAGCCATAGACAAGATGCA 58 46194844 46197027 CGCTAGTAAACAGAGCTGG 58 NA Rattus norvegicus 81 Ndufaf4 ENSRNOG00000007506 ENSRNOT00000010073 2 1 1 81 5 39251529 39251810 GAGCACCTGAGTCAGTATCC 60 39251848 39251872 ATACATCTCTTAGTAAGGACAGCAG 60 NA Rattus norvegicus 81 Yod1 ENSRNOG00000025704 ENSRNOT00000030476 2 1 1 98 13 47441494 47442318 ATCCAGTCAGGTGACATGC 60 47442378 47442398 TTCCCTGACATAACTAGGAGC 59 NA Rattus norvegicus 81 Tor1b ENSRNOG00000006435 ENSRNOT00000066618 2 1 1 94 3 9795963 9796428 CATCTTCCTCAGCAATGCAG 59 9796485 9796503 CCTTCAGCTGGATCTCCTC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 80 4 14184369 14185777 CAAGTGCAAAGAAGGAAAGC 58 14185817 14185838 TCGATAGGTTCTGAGACATCAG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000008319 1 7 9 97 4 14151453 14151471 GTTATTGGTGCTGTCCTGG 59 14151531 14159594 TCTTCAAGGACAACTTCCCT 59 NA Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 3 2 2 84 X 68779569 68779978 AAATCTACCAGCTCCTCCC 59 68780026 68780044 ACTTCTCGGTTCTCGTCAG 59 NA Rattus norvegicus 81 Ankrd45 ENSRNOG00000002890 ENSRNOT00000003857 3 1 1 88 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983098 78983117 ATCAACATCCAGTTCCACCA 59 NA Rattus norvegicus 81 Ier3ip1 ENSRNOG00000030004 ENSRNOT00000050772 3 1 1 147 4 132141670 132142355 ATTGTAGCAGAGCAGGGAC 60 132151585 132151603 GGATACCGACCAGGATGTG 60 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000046844 ENSRNOT00000070936 1 1 1 60 4 170080142 170080163 GCTTCGGGATATTAAGGAAAGG 59 170080103 170080122 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf4 ENSRNOG00000020106 ENSRNOT00000027251 1 1 1 80 5 173448848 173448866 CTGAGGATACTGTCTGCCA 59 173448909 173449317 GAACACAGTCAACTCCAAGC 60 NA Rattus norvegicus 81 RGD1561582 ENSRNOG00000021528 ENSRNOT00000036556 3 1 1 81 8 116320780 116320937 GAATCTGATTCCTCAGGGCA 60 116320977 116320999 TCATACTTCATAGAGGATCACGG 59 NA Rattus norvegicus 81 Olr535 ENSRNOG00000050080 ENSRNOT00000065152 2 1 1 60 3 74589941 74589962 GAATTTCTGTGGCTCTCATGTC 60 74589902 74589920 GGCTAAGATTGCTGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000020427,ENSRNOT00000047118 2 3 3 80 16 3537747 3556894 CTGTCATCGAAATGAAGGACAC 60 3556932 3556953 TCAACATCTGGATCTCATCCTC 60 NA Rattus norvegicus 81 Nkx1-2 ENSRNOG00000017006 ENSRNOT00000022904 2 1 1 97 1 204605349 204605367 GAATCCAATCGGGTCACAG 58 204603751 204603769 CTTCTTCCTCCTCTTCCGC 60 NA DesignNoJunction Rattus norvegicus 81 Birc2 ENSRNOG00000010602 ENSRNOT00000014560 3 1 1 80 8 6023893 6033047 AATGGTTTCCAAGGTGTGAG 58 6023832 6023856 GATGAGGATATCTAGCTTGAATCTC 59 NA Rattus norvegicus 81 RGD1563334 ENSRNOG00000050089 ENSRNOT00000071779 3 1 1 91 5 162599655 162599673 AACCCAAGACAACCTCCTC 59 162597219 162599601 GTTGTGGTAACAATCCAGGC 60 NA Rattus norvegicus 81 Klhl41 ENSRNOG00000007461 ENSRNOT00000009969 1 1 1 80 3 55914712 55914833 ATGCTATGATCCTGTGGCT 59 55914876 55914895 TGTGAGATCACATTATGGCC 58 NA Rattus norvegicus 81 Slc31a2 ENSRNOG00000013631 ENSRNOT00000019379 2 1 1 91 5 78120645 78120663 TGAATCTCGAGCTGAGTCC 59 78120718 78126811 GAAGATGAAGTGCATCGGC 59 NA InUTR Rattus norvegicus 81 Selenbp1 ENSRNOG00000053812 ENSRNOT00000088465 2 1 1 80 2 196107515 196107533 GTGGAGAAGGTGATCCAGG 60 196107355 196107472 GATGTCGGTGATCAAACCAG 59 NA Rattus norvegicus 81 Zfp512b ENSRNOG00000015558 ENSRNOT00000020873 1 1 1 80 3 177082317 177082335 TGTGTCCCAAAGAGTTCAG 57 177081687 177082273 AAGTCCGGAACCAATTCTC 58 NA Rattus norvegicus 81 Ccdc3 ENSRNOG00000017933 ENSRNOT00000024110 2 1 1 135 17 76995308 77089828 GAAGACAACAGGCTCATGTG 59 76995192 76995210 TGACCTTCTTGACTCGCTC 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 2 1 4 70 X 71961128 71961146 GTGTAGAGGAACTGCTTCG 58 71961180 71965810 TCTATCAAACTGCTGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 2 2 2 88 14 17143417 17145147 CGTTCCTACTCCAGGTCTG 59 17143347 17143365 CTGTGTCTGACGGAAGGAG 60 NA Rattus norvegicus 81 Cnn1 ENSRNOG00000027736 ENSRNOT00000029577 1 1 1 80 8 23118542 23118562 AAACAAGAGCGGAGATTTGAG 59 23118602 23120789 AAACTTATTGGTGCCCATCTG 59 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 3 2 2 81 8 70624061 70624522 CCATAAAGAGCAACGGGAG 58 70624566 70624585 AAATCGGAGTGGACAATGAC 58 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371,ENSRNOT00000041988 1 2 2 80 4 82783836 82789363 GGTATATTCAAGGTTGGATGGA 58 82789404 82789422 TTCCACATACTGTTCAGGC 58 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423,ENSRNOT00000089292 2 2 2 80 4 31565932 31565950 CTCTAGAAAGAACCCTGCC 57 31565992 31566581 TCAATCCAGTAGTAATCGCTC 57 NA Rattus norvegicus 81 Fh ENSRNOG00000003653 ENSRNOT00000004917 2 1 1 80 13 93651657 93653866 CGCATATAGGGTATGACAAAGC 59 93651598 93651619 CAATAGCCGTTTCCTTTAAGGT 59 NA Rattus norvegicus 81 AABR07043701.1 ENSRNOG00000050237 ENSRNOT00000072022 2 1 1 80 19 36155325 36155345 ACTTAGAGGTGGAGAACACTG 59 36153893 36155285 TGAGCAGGTTTCTAGAGAAGG 59 NA Rattus norvegicus 81 Tmem206 ENSRNOG00000003915 ENSRNOT00000005387 3 1 1 80 13 110030446 110031467 CCAGAAAGTCCAGGATATAATCAC 59 110031504 110031524 TTAAATAATGCCAGGAACGCC 59 NA Rattus norvegicus 81 Tmem62 ENSRNOG00000023874 ENSRNOT00000030065 3 1 1 80 3 112916387 112916628 GGGTCTGCAGATATCCGAC 60 112916669 112916690 TCCGAACAGAACTTCTCTAAGG 60 NA Rattus norvegicus 81 Sf3b2 ENSRNOG00000020412 ENSRNOT00000068497 3 1 1 80 1 220655920 220655938 AAGGAGAAGAAGCCTGGAG 59 220655762 220655877 AACTTTGTGGGCATTAGGTC 59 NA Rattus norvegicus 81 Dbf4 ENSRNOG00000050482 ENSRNOT00000072455 2 1 1 92 4 22905428 22906268 GTGAACCGGACTTACAAGC 59 22906322 22906342 GATATCAAACGGACTGCAAGG 60 NA Rattus norvegicus 81 Zkscan1 ENSRNOG00000001335 ENSRNOT00000045379 2 1 1 107 12 19242212 19242230 CTCATCCTGGAGGAATGGG 59 19242301 19245245 CCTGTTCTCAGAACCCTGG 60 NA Rattus norvegicus 81 Mrps35 ENSRNOG00000001842 ENSRNOT00000002520 1 1 1 80 4 181452958 181454552 CACTATCAAGACAGACAGATGC 59 181454591 181454611 TCATGGTACAGGACTGTAAGG 59 NA Rattus norvegicus 81 Mrps35 ENSRNOG00000001842 ENSRNOT00000002520 2 1 1 80 4 181438229 181440187 CGATGAGAAGAAAGGCACTG 59 181440230 181440248 CAGCAGTAGGGTAAACGCT 60 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 2 3 3 80 17 66447369 66447390 CACTTGTCTCCTTATTTCCTCC 59 66447428 66449233 GTAAAGATGGATGTGGAACCTG 59 NA Rattus norvegicus 81 Six1 ENSRNOG00000022777 ENSRNOT00000034338 2 1 1 100 6 95931062 95933129 AAGGAAAGGGAGAACACCG 60 95930980 95930999 TCTTCTGAGCTGGACATGAG 59 NA Rattus norvegicus 81 Angel2 ENSRNOG00000003795 ENSRNOT00000005084 3 1 1 80 13 109511751 109513565 CTGGAATCACTGGGTTATCAC 59 109513607 109513625 ATGTTTGAAGCAGATGGCA 58 NA Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 3 1 1 101 4 179481305 179481404 AATCTGCTGTATCTTGGACG 58 179481468 179481486 CTCTGGGTCCTTCACATCC 60 NA DesignNoJunction Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 3 1 1 78 1 255573047 255573144 GAAGAAGTCTTACACCACCC 58 255572988 255573009 CTTATAGTATTTCAGCACAGCC 57 NA DesignNoJunction Rattus norvegicus 81 Dcun1d5 ENSRNOG00000008390 ENSRNOT00000061916 2 1 1 80 8 5454358 5454376 CACAGCTGAACGACATCTC 59 5454417 5454519 GGCTTCTCTGATCTTTATCCCT 60 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000076488 1 1 2 94 5 138504299 138504841 TTACTTGTAGGACACGGGT 58 138504898 138504917 CAGTCTCTGGTTTCTATCCC 57 NA Rattus norvegicus 81 Treml2 ENSRNOG00000013554 ENSRNOT00000042404 3 1 1 80 9 14661098 14661116 GCTGACATTTCTTCCAGCA 59 14660826 14661057 AAGTTGTATCTTCCCATGTGTC 59 NA Rattus norvegicus 81 Naaa ENSRNOG00000002273 ENSRNOT00000003102 1 1 1 80 14 17284445 17284464 TGTGACTACCTCAACCTCAG 59 17284507 17288263 AATACTGGTGCAGAATGCG 59 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 1 1 3 64 10 13289724 13306099 GTCTGTCTGCTCTGGAGAG 59 13306127 13306145 ATCTGGCACTTAGAAGCTG 57 NA DesignNoJunction Rattus norvegicus 81 Ppp2r5a ENSRNOG00000000068 ENSRNOT00000000078 3 1 1 80 13 110036078 110036098 GAACATCGATAAGATCCTGCC 59 110035478 110036040 GCTACAATAGTCTGATTCCAGTG 59 NA Rattus norvegicus 81 Amdhd1 ENSRNOG00000005266 ENSRNOT00000007331 3 1 1 81 7 34406184 34406205 GCTATATCTGACAGGGTCTGAG 60 34403583 34406142 TATAAGCCCATCAGTGCCC 59 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 2 2 2 80 3 3541058 3541076 TACGATACCATGGTGGAGG 58 3517147 3541015 CTCTGGTTTCTCTTGCACTG 59 NA Rattus norvegicus 81 Gimd1 ENSRNOG00000042721 ENSRNOT00000064628 2 1 1 80 2 237704805 237704824 GGTCCATAGAGCTGATATGC 58 237704866 237713508 GAATCTCCCAGAAGTTCCTG 58 NA Rattus norvegicus 81 Mir3556a ENSRNOG00000035458 ENSRNOT00000053581 1 1 1 87 4 58343946 58343964 ACCGATTTCAGATGGTGCT 59 58344015 58344033 ACATGACCTCTTGTGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nnmt ENSRNOG00000005930 ENSRNOT00000007789 2 1 1 94 8 52937680 52937698 TTACAGCTTTGGGTCCAGG 60 52936047 52937622 CCTTTACACCATCCAGGCA 60 NA Rattus norvegicus 81 Zfp775 ENSRNOG00000008362 ENSRNOT00000011041 2 1 1 124 4 78240430 78248396 CACAAAGTCAAAGGTGGCA 59 78254828 78254846 TCTCCTGCTTGATCCTTGC 60 NA InUTR Rattus norvegicus 81 Rn60_5_1514.1 ENSRNOG00000030173 ENSRNOT00000043325 3 1 1 86 5 147637227 147637245 TGACATCACGTACCAGGAG 59 147637292 147637313 CGAAACTGCTTGATCTCTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox4g ENSRNOG00000027994 ENSRNOT00000034056 2 1 1 80 X 124566270 124566288 AATCACTTCATCGGTGCAG 58 124561479 124562816 AAACCAATTCTGAACTCTGGC 59 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 3 2 2 80 1 162870084 162871749 GTGAACTATCTGGACAGTTACCT 60 162871789 162871807 ATCTGTTAAGGAGCCTCCG 59 NA Rattus norvegicus 81 Ncbp2 ENSRNOG00000048589 ENSRNOT00000071483 1 1 1 80 11 72923732 72923752 AGAAGATCATCATGGGTCTGG 59 72921956 72923696 CATCTGCTCTTGAATAGTATTCCAC 60 NA Rattus norvegicus 81 Lamtor4 ENSRNOG00000027028 ENSRNOT00000029279 2 1 1 85 12 19576925 19576943 TCTCAGAACTGGTCAGCAC 59 19576992 19577301 ACCAAAGACCACAGACAGG 60 NA Rattus norvegicus 81 Mir449c ENSRNOG00000036435 ENSRNOT00000054547 2 1 1 60 2 44896104 44896122 GGCTGTTAGAACTTCGTCC 58 44896146 44896164 GCTTCTAAGTGCAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gadd45a ENSRNOG00000005615 ENSRNOT00000007698 1 1 1 85 4 97784521 97784628 ATCGAAAGGATGGACACGG 60 97784454 97784472 TACACGCCGACAGTTATGG 60 NA Rattus norvegicus 81 Tcf15 ENSRNOG00000000012 ENSRNOT00000000013 3 1 1 69 3 147643797 147643815 CCTTCTGTCTCAGCAACCA 60 147649110 147649128 CTCACTTTCAAGCAGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp473 ENSRNOG00000026572 ENSRNOT00000037973 2 1 1 106 1 100739047 100741342 CAGTGATGAAGCGACTGAG 58 100738959 100738978 CAAAGTTGAGTTCCTCCGTG 59 NA Rattus norvegicus 81 Nim1k ENSRNOG00000016353 ENSRNOT00000021964 1 1 1 133 2 52492480 52492498 CCATAGGAACGACCCAGAC 60 52465409 52492383 AGATGACAGCTCATCCTCG 59 NA InUTR Rattus norvegicus 81 Nim1k ENSRNOG00000016353 ENSRNOT00000021964 3 1 1 142 2 52492488 52492507 TTAGCAGAGCCATAGGAACG 60 52465409 52492383 AGATGACAGCTCATCCTCG 59 NA InUTR Rattus norvegicus 81 LOC100909692 ENSRNOG00000046043 ENSRNOT00000072524 3 1 1 60 3 103485676 103485694 GCATGATGGGAAACTCCCT 60 103485634 103485655 GGAGAATGTAAGTGAGGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa7 ENSRNOG00000016877 ENSRNOT00000022698 3 1 1 104 1 72559152 72559170 TCGATCCTTCCACAACCTC 59 72559236 72559720 AGATCTTTCTCAGCCAGTCTC 59 NA Rattus norvegicus 81 Zbtb8b ENSRNOG00000026898 ENSRNOT00000037106 2 1 1 73 5 147634798 147634819 GTTCAGAACGACTGGTATAGAG 58 147630929 147630947 AAAGGACACTTGTGGAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Iqcf6 ENSRNOG00000042065 ENSRNOT00000068240 1 1 1 100 8 115328554 115328572 TAAAGACCAAGGCCATGGA 59 115328632 115329192 GGCTGTCTTCTCTAACTTTACAC 59 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 1 2 2 100 4 117597682 117600453 CCAATGTGATTGTCGATCCA 58 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 RGD1563222 ENSRNOG00000010963 ENSRNOT00000014767 3 1 1 80 3 94036404 94036423 AGATCCGGATTAAGGAGCTG 59 94036464 94037652 GCGCCTTCAGGAATTTATAGC 60 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 3 2 2 80 7 97832017 97832035 TCGAAGAACACGTGTTCCA 60 97832078 97833155 AATTGTCCTCCATCACCCTC 60 NA Rattus norvegicus 81 Hsbp1 ENSRNOG00000014415 ENSRNOT00000019443 2 1 1 88 19 51985683 51986387 CATCGGAAGGATCGATGAC 58 51986439 51986457 GTTCTTCTACTCCAGCCTG 57 NA Rattus norvegicus 81 Wdpcp ENSRNOG00000054331 ENSRNOT00000092168 1 1 1 80 14 106495799 106496662 TCTACCAGTATCAGCAGCA 58 106499818 106499838 AGTGTCCAAGGATAATCTCGT 59 NA Rattus norvegicus 81 Zc2hc1c ENSRNOG00000027115 ENSRNOT00000009156 2 1 1 76 6 109112661 109112680 AGCAGTACTTGAACTGGAGG 60 109118920 109118938 CTTCTGTCTCCAGGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Pemt ENSRNOG00000054423 ENSRNOT00000083698 1 1 1 80 10 46352934 46399240 CTGGAATGTGGTAGCAAGG 58 46352872 46352891 GAATAGCAGGCTAGGTAAGG 57 NA Rattus norvegicus 81 Gpatch2l ENSRNOG00000010227 ENSRNOT00000013602 1 1 1 80 6 110096531 110096550 GAAAGAAAGGATGGAGTGCG 59 110096591 110109295 ACACTGCTAGTTTCACTTTCG 59 NA Rattus norvegicus 81 Zmym4 ENSRNOG00000012397 ENSRNOT00000016992 2 1 1 80 5 144910434 144913321 AAAGAATGCCAGACAGACAC 59 144910373 144910392 AGGTATGGGAACAAACACTG 58 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000081109,ENSRNOT00000089775,ENSRNOT00000031149 3 3 4 80 12 14532397 14536615 CACACTGCAAGATGTTCCA 58 14532335 14532354 CACTGGATCAGAACTGAGGA 59 NA Rattus norvegicus 81 Phyhip ENSRNOG00000010555 ENSRNOT00000014441 2 1 1 60 15 52775283 52775303 CCATCACAAGGAGTACTTCCA 60 52776680 52776700 GTAAGGCTGTAGTACATTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974,ENSRNOT00000085188 2 2 2 80 13 100324519 100324539 GACAGAATTCACAGCTACCTG 59 100318031 100324477 CTTGCAGTTGCCTTCTCTG 59 NA Rattus norvegicus 81 RGD1560034 ENSRNOG00000038943 ENSRNOT00000059532 2 1 1 80 7 27782197 27786392 CCAAGGGAGATTCTGGTCC 60 27786435 27786454 GCTGAGAGGAGTTCTGACTG 60 NA Rattus norvegicus 81 Klf7 ENSRNOG00000012961 ENSRNOT00000017901 2 1 1 85 9 70787216 70787377 AAACAAGAAGAGGAGGGTCC 59 70787150 70787168 TCTGGTGGGCCTTTAAGTG 60 NA Rattus norvegicus 81 Gp6 ENSRNOG00000047204 ENSRNOT00000071927 1 1 1 80 1 73046102 73046123 GCTGCTCATATCAGAATGAGAG 59 73046161 73047554 GCTTAGAGTAAACACCTGTAGC 59 NA Rattus norvegicus 81 Psmc6 ENSRNOG00000007203 ENSRNOT00000009649 1 1 1 80 15 19667522 19667540 AGATAAGGCGCTTCAGGAC 60 19667581 19668522 TGTTCCCTTAGCTCCTTAAGAC 60 NA Rattus norvegicus 81 Abcb11 ENSRNOG00000050860 ENSRNOT00000075107 1 1 1 80 3 55508527 55508547 GCTGCCTATAGATATGGAGGT 59 55506385 55508485 AACTGAAGAGACCACCCTG 59 NA Rattus norvegicus 81 Uhrf1bp1l ENSRNOG00000050317 ENSRNOT00000072733 1 1 1 80 7 30408794 30410406 CACCTCTCCAGATTCACCA 59 30410448 30410468 GTTCTTCAGTTCACCTTCTCC 59 NA Rattus norvegicus 81 Uhrf1bp1l ENSRNOG00000050317 ENSRNOT00000072733 2 1 1 80 7 30413762 30413782 GATGAGTACTTGTGAAGAGCC 59 30413824 30417001 AAGCCGTACTCACTCTGTC 59 NA Rattus norvegicus 81 Tvp23a ENSRNOG00000025545 ENSRNOT00000029359 1 1 1 82 10 5328480 5328498 GTTCAGCAGGAGCTTTGTG 60 5328540 5329757 CAGTTACATTCTTCACAGACCAG 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000064873 3 1 2 86 7 118490613 118490631 ATGTCTGGATTCCGGTCAG 59 118490681 118492882 AAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Qsox2 ENSRNOG00000018574 ENSRNOT00000061735 3 1 1 80 3 3671472 3671491 CTCTGGAAACTGTTCCACAC 59 3667752 3671429 GTCACCTTCAAAGCCTGTG 59 NA Rattus norvegicus 81 Flt4 ENSRNOG00000002511 ENSRNOT00000003519 2 1 1 80 10 35105954 35106102 CCTACGCAGAGAAGTCTCC 59 35106145 35106164 CAAGTCTCCTCCTATCAGCC 59 NA Rattus norvegicus 81 Bicd1 ENSRNOG00000036911 ENSRNOT00000055435 2 1 1 80 4 184091279 184091299 GGCTGTAGTTACAAATGTCCA 58 184091341 184109189 ACCATCTCGTTGTTCTCCT 58 NA Rattus norvegicus 81 Vwa5b1 ENSRNOG00000016553 ENSRNOT00000022282 3 1 1 80 5 157029482 157029501 TGCCTCTTCAATGTCATTGG 59 157027507 157029444 CAAGTTCTCCTCATTGTAGATCTG 59 NA Rattus norvegicus 81 Gpr39 ENSRNOG00000021586 ENSRNOT00000038811 3 1 1 60 13 42009025 42009043 GGCTATTTGCAGAAGGAGG 58 42009065 42009085 CCAAGATATCTGAACAAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina7 ENSRNOG00000011081 ENSRNOT00000014739 1 1 1 80 X 110228122 110228801 TTATTGCAGAAAGGATGGGT 57 110228061 110228080 CTGAAGTGTACTTCCAAGGT 57 NA Rattus norvegicus 81 Rpp38 ENSRNOG00000038025 ENSRNOT00000057855 1 1 1 85 17 78915705 78916035 TCTGCACAGCATCTCTGTC 60 78916083 78916102 GAATTCCTTCCGAAGGAAGC 59 NA InUTR Rattus norvegicus 81 AABR07055834.1 ENSRNOG00000021900 ENSRNOT00000042386 3 1 1 81 7 10773858 10773877 CTGGATCCTTCCCAGAAGAG 59 10772989 10773818 CGGATGTTATACCTATAGCAGTG 59 NA Rattus norvegicus 81 Rpl28 ENSRNOG00000017127 ENSRNOT00000058943 1 1 1 86 1 72621482 72621500 CATCTGCAATGGATGGTCG 59 72621332 72621432 CAGATTATTGGGCTCCGTG 58 NA Rattus norvegicus 81 Iqcc ENSRNOG00000048553 ENSRNOT00000074345 3 1 1 80 5 147820342 147820453 TAACAGTCGGAAGGAGTACC 59 147820281 147820303 TTAGTAGGCTTGTCTCTGATCTG 60 NA Rattus norvegicus 81 Mir3572 ENSRNOG00000060004 ENSRNOT00000079634 1 1 1 60 1 64136044 64136062 TAAGTGGAGGCCAGTTTGG 60 64136002 64136020 GTGTAAACAGGCTGTCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl2 ENSRNOG00000002792 ENSRNOT00000003745 3 1 1 80 14 18733083 18733103 GTTGACTTCAAGAACATCCAG 57 18732905 18733042 AAGAGTGGCTATGACTTCTG 57 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 1 2 2 80 18 71525019 71575015 TGCTCCAGAAGGACTTCAC 59 71524957 71524975 ACAGGAAGGTGATGAAGCC 60 NA Rattus norvegicus 81 Aida ENSRNOG00000058805 ENSRNOT00000089309 2 1 1 80 13 101715347 101715368 GAAGAAGATGAAGAAGGTGGTG 59 101715408 101718145 GCGTGGCAATAAAGTACCAG 60 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554,ENSRNOT00000015775 2 2 2 80 3 94356400 94356678 ACTCCGAGAGTGTAAAGGT 58 94356338 94356356 CTGCTGAGTGAACACATCC 59 NA Rattus norvegicus 81 Trim21 ENSRNOG00000018517 ENSRNOT00000024992 3 1 1 81 1 167689266 167689572 CTGTTGGGTTCATATTACTCTGG 59 167689207 167689225 CATCCTCACTTGTCTCCGA 59 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 2 2 2 80 5 50060057 50060976 GCTAAGGATTGTCCAGATGTG 59 50059997 50060020 GGAATTTCTATCTACACAGCAGTC 59 NA Rattus norvegicus 81 Patl2 ENSRNOG00000017061 ENSRNOT00000022964 3 1 1 80 3 114067546 114069125 GGTACTTCAGAATCAGTTTGGG 59 114067487 114067505 GAAGAATCCAGGGACACCA 59 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 2 1 1 68 16 21085681 21087804 GGTAAAGCTGGATCTAGAAGG 58 21085633 21085651 AAAGTCATCTTGTAGCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 1 4 4 74 2 250224218 250224596 CAACGTGTATCATCTCAAGTG 57 250224164 250224182 TAGTGAAACCGATCTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Klhl21 ENSRNOG00000003334 ENSRNOT00000004508 3 1 1 80 5 169185231 169186872 GTACTTCGTCAGGGATGAC 57 169186914 169186934 TTCATAGATGGGATCTTGTCC 57 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 2 2 2 129 1 165886104 165886122 AGAGCGATCTTCCTGAGTC 59 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 1 2 3 80 7 42331546 42332266 TTAGGTCCTGAGAAAGATTCCA 59 42332306 42332325 ATTCCTAAGGGAACTGGCTG 60 NA Rattus norvegicus 81 Adad2 ENSRNOG00000015690 ENSRNOT00000021072 1 1 1 80 19 52260332 52260354 AGTATATCCAGAAGCAGTTGGAG 60 52261038 52261169 TTGTCTCTATGCTGAGAGGTG 59 NA Rattus norvegicus 81 Cd3eap ENSRNOG00000016825 ENSRNOT00000034266 2 1 1 87 1 80270666 80270684 GGAAGTGTGGCTTATCCGA 60 80269511 80269529 AACAGTCTTGGAGCCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Nmnat3 ENSRNOG00000013585 ENSRNOT00000018411 1 1 1 130 8 106371057 106417036 CCAGACAGGAAAGTACCAGG 60 106417129 106417147 TCCAGTCAGATGTCTGCAG 59 NA Rattus norvegicus 81 Lrrc9 ENSRNOG00000005409 ENSRNOT00000007339 3 1 1 80 6 95274273 95274909 ATGTGAAGGTCTTATGCCTC 57 95274952 95274970 TGCTGCTTAAGTGAGTCTG 58 NA Rattus norvegicus 81 Vwa5b2 ENSRNOG00000001707 ENSRNOT00000037612 1 1 1 80 11 83992935 83993031 AGTCCACTCTAAAGGACATCAG 59 83992876 83992895 AATGCTGACTTGGAGTTGTC 59 NA Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000015286 3 1 2 80 4 32495428 32495451 GGACGAATTTAGGAGACATAAGAC 59 32495490 32558608 ACTGCTGCATATGTCTCCC 60 NA Rattus norvegicus 81 Hey1 ENSRNOG00000011593 ENSRNOT00000015537 1 1 1 80 2 95320362 95320382 ACTACAGCTCCTCTGATAGTG 59 95320421 95320652 AACTCAAGTTTCCATTCTCGTC 59 NA Rattus norvegicus 81 Hey1 ENSRNOG00000011593 ENSRNOT00000015537 3 1 1 80 2 95320364 95320384 TACAGCTCCTCTGATAGTGAG 58 95320424 95320654 CGAACTCAAGTTTCCATTCTC 57 NA Rattus norvegicus 81 Kxd1 ENSRNOG00000019971 ENSRNOT00000027053 1 1 1 80 16 20662292 20664683 AGGATCAGGACACTGAAGG 58 20665814 20665833 CTCTAGGAGTGAACCCTCTG 59 NA Rattus norvegicus 81 Wnt6 ENSRNOG00000017409 ENSRNOT00000023439 3 1 1 116 9 82043979 82043997 AATGTCAGTTCCAGTTCCG 58 82044311 82044329 CAGCGGTAATTGCAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1559732 ENSRNOG00000043019 ENSRNOT00000048642 3 1 1 84 10 45260244 45262101 GACTTACCTGCTTGGACCT 59 45262148 45262167 GATTTCCGTGGACAGAAGTC 59 NA Rattus norvegicus 81 Armc2 ENSRNOG00000026217 ENSRNOT00000031047 1 1 1 80 20 46818265 46818284 AAACGACTGAGGACACAGAG 60 46804393 46818223 TCAAGGTAGCAGTTGTCTGG 60 NA Rattus norvegicus 81 Fancd2 ENSRNOG00000061085 ENSRNOT00000082618 3 1 1 80 4 145521257 145521959 AGCCAGAAATCAATGTCTCC 58 145522002 145522020 TCCGTTATGTTGTCTTGCC 58 NA Rattus norvegicus 81 AABR07065265.1 ENSRNOG00000021751 ENSRNOT00000032968 1 1 1 80 6 117972602 117972651 CCATAAATAACTGTAGTGACCAGG 59 117972545 117972565 CATCCACATGAACCCTAAGGT 60 NA Rattus norvegicus 81 LOC691056 ENSRNOG00000021048 ENSRNOT00000067679 2 1 1 131 1 101788071 101789396 CTCTTCGACCAGGAGACTC 59 101789491 101789509 GTTGGGAAACCCATCTCCT 59 NA Rattus norvegicus 81 Ereg ENSRNOG00000002771 ENSRNOT00000003716 1 1 1 80 14 18578989 18579669 TACTGCAGATGTGAAGTGGG 60 18578928 18578946 TTCTCTGCTCAAGGGTTGG 60 NA Rattus norvegicus 81 Olr809 ENSRNOG00000026333 ENSRNOT00000038359 3 1 1 60 4 72389103 72389121 AGATGCTGGCTGTACTGAG 59 72389144 72389163 GCTACCATGACCTTGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nubpl ENSRNOG00000027444 ENSRNOT00000038074 2 1 1 80 6 72996701 73104492 CTACTGAGACAGGTTGATTGG 58 73104534 73104552 TGATAACTGCACGTCTCCT 58 NA Rattus norvegicus 81 Ikzf3 ENSRNOG00000007200 ENSRNOT00000009454 1 1 1 80 10 86423028 86433573 ATTCATTGGTGAGAAGCGC 59 86422966 86422984 TGCATCATCTCGTTCTCCT 59 NA Rattus norvegicus 81 F9 ENSRNOG00000003430 ENSRNOT00000004559 2 1 1 80 X 143122282 143122303 CCAATTAATGACTTCACTCGAG 57 143122343 143139450 ACCATTTAGAATGACCTGCC 58 NA Rattus norvegicus 81 Gna11 ENSRNOG00000005446 ENSRNOT00000007498 2 1 1 80 7 11045599 11046632 CATCATCTTCAGGATGGTGGA 60 11046673 11046692 GACGTGACATTCTCAAAGCA 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000012167 1 1 2 80 15 70138978 70138998 GAAACTACATGAATGCTGGCT 59 70121886 70138939 TTGTGTCCTTCAGTTTACAGAG 58 NA Rattus norvegicus 81 Rtp4 ENSRNOG00000028895 ENSRNOT00000043660 3 1 1 81 11 80640451 80643715 AGTAGTTGGCAGGTTCCAG 59 80640388 80640406 CTGGAACATGTGGCATACG 59 NA Rattus norvegicus 81 Mysm1 ENSRNOG00000026299 ENSRNOT00000039554 2 1 1 80 5 113911994 113912012 CTCATCCTGCGTTTGATCC 59 113910742 113911953 CTCCTCTGGAGAAATAACTCTG 58 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 2 2 2 120 3 164275572 164275590 TCTGAAGATGCACATCCGA 59 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 AABR07035098.1 ENSRNOG00000000887 ENSRNOT00000001186 3 1 1 101 12 4634348 4634368 TGCCTGTCTACTGTTCTGTC 60 4634429 4634450 CTCTGCTTCTGTAAGAATCCTG 59 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000034090,ENSRNOT00000078746 2 2 2 97 14 18839197 18839215 CTGAAGACCCTACCAAGGG 59 18839001 18839138 AGAGTGGCTATGACTTCTGTC 59 NA Rattus norvegicus 81 Tex26 ENSRNOG00000000905 ENSRNOT00000061246 2 1 1 80 12 6690103 6697514 TTTAATACGTCCAAAGAGCACC 59 6690044 6690064 TGGTATTGGGTTTCATTCAGG 58 NA Rattus norvegicus 81 Proser2 ENSRNOG00000045553 ENSRNOT00000073933 1 1 1 80 17 76100865 76134346 CAGAAGTTTCACGATGGATGAC 60 76134383 76134405 GTCTCTTCAAAGAACAGGATGAC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000077632 3 1 5 76 20 3419357 3419375 ACTACTTTCCCTGTCAGCG 59 3417151 3417169 TCCCAGTCAATCACCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360 3 1 4 192 X 70460819 70460838 GTAGCAGGGTTATGAAGCTC 58 70459691 70460236 AGTCTGGAATCACCTTGGA 58 NA InUTR Rattus norvegicus 81 Zfp248 ENSRNOG00000037251 ENSRNOT00000076927 3 1 2 99 4 150485702 150487921 GTCACCCAGAAAGGAAATGG 59 150485622 150485640 GTGTTCTTGTTGGTGAGCA 59 NA InUTR Rattus norvegicus 81 C1ql1 ENSRNOG00000002963 ENSRNOT00000003986 2 1 1 63 10 91046585 91046603 CAGATCTCTGCAAGAACGG 58 91040603 91040621 TAGTTCTGGTCAGCATCCT 58 NA DesignNoJunction Rattus norvegicus 81 Naa30 ENSRNOG00000014192 ENSRNOT00000020074 1 1 1 80 15 26040126 26040144 AAAGATGTTCCGCAGAGGT 59 26040187 26042691 ACCAAGTTAGTACCGATGCC 60 NA Rattus norvegicus 81 LOC688286 ENSRNOG00000045615 ENSRNOT00000071406 2 1 1 81 10 106880578 106881132 CCTCATCTCTGTGATGGGT 59 106880515 106880533 CTCATAGACGTGGAGGTGG 59 NA Rattus norvegicus 81 Ube2o ENSRNOG00000011007 ENSRNOT00000014699 2 1 1 83 10 105511816 105511916 ATGTGGAGCTCATTGGAGAG 60 105511752 105511770 TATCAGTAGTGCGGAAGCG 60 NA Rattus norvegicus 81 Slc30a4 ENSRNOG00000000170 ENSRNOT00000000184 2 1 1 80 3 114809920 114810566 CACATGCAGCTAATTCCCG 59 114809858 114809877 GAATGTGTTCAGCAAGAGGT 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 2 1 1 60 9 85544861 85544879 CAGTAATTGGAGCCCTGCT 60 85544903 85546056 TCCCTGATGAACAGTGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Chmp3 ENSRNOG00000007356 ENSRNOT00000010253 3 1 1 80 4 99489423 99492372 AAGAGATGATGAAGGCTGGA 59 99492411 99492433 CTTCCATTTCCTCTTGATCATCC 59 NA Rattus norvegicus 81 Olr1374 ENSRNOG00000045802 ENSRNOT00000072967 3 1 1 60 10 12628507 12628527 GCTGATGATTCTTACAGAGGG 58 12628467 12628487 GATGAGGATGCAGACAAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr211 ENSRNOG00000048223 ENSRNOT00000047852 2 1 1 60 1 170800774 170800792 TTTGCCTACATGAGACCCA 59 170800732 170800752 ACACAGAGACAACCTTATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550196 ENSRNOG00000021551 ENSRNOT00000035071 1 1 1 80 3 170456770 170457719 AACCGACTGAAAGATGCTC 58 170456708 170456726 CTCTGTTCTCTGCTTCGTG 58 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 3 2 2 84 14 106220073 106232405 CGGAAGATTCGATTCAACCC 59 106220008 106220027 ACCACCAGTTTGTTCAACAC 59 NA Rattus norvegicus 81 Tomm7 ENSRNOG00000043114 ENSRNOT00000065962 3 1 1 99 4 7836013 7836031 GCAAGGAAGCCAAACAGAG 60 7836090 7838583 CTTGTGAATCCCAGGTAAATCAC 60 NA Rattus norvegicus 81 Zdhhc7 ENSRNOG00000017342 ENSRNOT00000023405 1 1 1 80 19 52734755 52735256 TGACGAAACTGAGATCGAGAG 60 52734695 52734713 ACAGACTTCATCCCTTCCC 59 NA Rattus norvegicus 81 Olr79 ENSRNOG00000015764 ENSRNOT00000021102 2 1 1 60 1 168245521 168245542 TCTTTACTTCTTCTCCTGTCCT 58 168245563 168245581 TGGAGGCTATACTCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csn3 ENSRNOG00000001951 ENSRNOT00000002671 3 1 1 68 14 21808303 21808321 ATCCTGGCACTAACTCTGC 60 21806421 21807648 CTTCTCACGGCAGTTTGAG 59 NA DesignRelaxed Rattus norvegicus 81 Slc24a5 ENSRNOG00000005158 ENSRNOT00000043611 1 1 1 80 3 117346719 117346738 AGCACCATTCTAGGATCTGC 60 117346779 117347130 CGTTGAAACCATGTTGGAGAG 60 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944,ENSRNOT00000083419 2 2 2 80 8 53735425 53736626 GGACTCAACAATACAGACCA 57 53736666 53736687 GTAGAATGAGACAATGGAGGAG 58 NA Rattus norvegicus 81 Rras ENSRNOG00000037247 ENSRNOT00000027809 2 1 1 81 1 101016208 101016226 CTTACTTTGAGGCCTCAGC 58 101016271 101016362 TGGTATTTCCGGACAGTCC 59 NA Rattus norvegicus 81 Rras ENSRNOG00000037247 ENSRNOT00000027809 3 1 1 82 1 101016208 101016226 CTTACTTTGAGGCCTCAGC 58 101016272 101016363 CTGGTATTTCCGGACAGTC 58 NA Rattus norvegicus 81 Dus2 ENSRNOG00000019819 ENSRNOT00000026827 2 1 1 80 19 38021399 38024509 AGTTCATGGGAGGAATCGT 58 38024553 38024571 GAGAGGGTTTCAGCAATGG 59 NA Rattus norvegicus 81 Rrm2 ENSRNOG00000054286 ENSRNOT00000091551 1 1 1 80 6 43885769 43886650 CATAGTCAATGAGAACTTGGTGG 60 43886687 43886708 ATTTGGAAGCCATAGAAACAGC 60 NA Rattus norvegicus 81 Rrm2 ENSRNOG00000054286 ENSRNOT00000091551 2 1 1 81 6 43887706 43887727 AATATTCTGGCTCAAGAAACGG 59 43887769 43889049 GTGCAGACCCTCATCTCTG 60 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000034180 ENSRNOT00000046519 1 1 1 60 10 64336373 64336392 CTAAGAGGCGAAACACTACC 58 64336413 64336433 CTTCGGTAGACGATCTTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcof1 ENSRNOG00000026108 ENSRNOT00000045041 3 1 1 80 18 56115532 56115550 ACCATCATCTGTTGCAAGC 59 56112691 56115490 GAGTCAGGAAATTCTTCTGGC 59 NA Rattus norvegicus 81 Fev ENSRNOG00000017856 ENSRNOT00000024190 3 1 1 117 9 82145939 82146632 TGTACCTACCAGATCCCGT 59 82144125 82144143 AGAAACTGCCACAACTGGA 60 NA Rattus norvegicus 81 Brox ENSRNOG00000052963 ENSRNOT00000078834 3 1 1 81 13 101680006 101680855 CCAAGGATGACAGTATCAAACC 59 101679946 101679970 GTGTCTTTCTGAGGTTTGATATCTG 60 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 3 2 2 80 1 102864264 102867294 ATTAGACGAGGGCTATGGC 59 102867335 102867356 ATGGCAGCATTACTATTCTCCT 60 NA Rattus norvegicus 81 Slc7a6 ENSRNOG00000019943 ENSRNOT00000027117 2 1 1 80 19 38176487 38176996 GAAAGTTCTGGCTACTGTCAC 59 38177034 38177056 TTCTCTTCAGCTACATCTAGCTC 60 NA Rattus norvegicus 81 Olr569 ENSRNOG00000059247 ENSRNOT00000079367 2 1 1 60 3 75583151 75583172 CTTGTGATTCCTATGCTGAACC 60 75583189 75583211 CCTCTTTCACATCCTTGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs9 ENSRNOG00000003800 ENSRNOT00000005076 1 1 1 80 10 97561960 97561979 GCAGCCTCTATCGATTTCAG 59 97561442 97561700 GATAGATGGCATAGTCGGTG 58 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 2 2 3 80 9 10462187 10462206 TAGGAGACAGCACTGAACTG 59 10460557 10462147 CCTTGTCATCTATAGCATGCTC 59 NA Rattus norvegicus 81 Zcchc14 ENSRNOG00000018226 ENSRNOT00000074448 3 1 1 80 19 53652324 53652347 CTGAATAAATTTGAGTCCCTCACC 60 53651793 53652287 CTCTGACTTCTCCTTCTCCAG 59 NA Rattus norvegicus 81 Ppp1r18 ENSRNOG00000000816 ENSRNOT00000001084 1 1 1 85 20 3389092 3394432 ACAAACAGCTCAAGATCTCC 58 3389026 3389044 TAGATCCTCCAGTACCGAG 57 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 2 2 2 80 3 79257481 79257502 AGTTTACCTAAATATGCAGCGG 59 79254705 79257443 AGAAATATCATAGGGCAGGACG 60 NA Rattus norvegicus 81 T2 ENSRNOG00000024172 ENSRNOT00000033685 3 1 1 82 1 52941725 52942662 CGCCTACCTGATTGTAGGG 60 52941661 52941681 TCCAGAAATCCTCGTAGTCAC 59 NA Rattus norvegicus 81 Cd248 ENSRNOG00000020197 ENSRNOT00000027339 3 1 1 60 1 220448206 220448224 TTTGCTCCCAGATGTTCCA 59 220448248 220448266 GAGAGCTGAGACAGAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560212 ENSRNOG00000057774 ENSRNOT00000082419 2 1 1 128 18 76728630 76730304 TGTCTTAAAGCAAACGGTGC 60 76730395 76730413 ATGTTCATCAGGTCGTCCG 60 NA InUTR Rattus norvegicus 81 Vom1r43 ENSRNOG00000032226 ENSRNOT00000048195 3 1 1 60 1 67206097 67206115 GCTCAAGTGTTTCCATGGT 58 67206055 67206074 TGAATATGCTTGACATGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015,ENSRNOT00000077340 3 2 2 88 1 53541007 53541025 CAAAGAGGCTTTGGCAGAC 60 53541075 53542760 TTGGAAGACCAGATATCAGCC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 1 4 5 80 19 43225384 43226678 CAGAGGAAGATGAGAAAGAGGA 59 43226717 43226737 TGGTGTTATCCACAAGATTGC 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 2 4 5 80 19 43225385 43226679 AGAGGAAGATGAGAAAGAGGAC 59 43226717 43226738 TTGGTGTTATCCACAAGATTGC 60 NA Rattus norvegicus 81 Aasdhppt ENSRNOG00000005795 ENSRNOT00000008062 3 1 1 82 8 1444369 1444389 CAAGGAGTGGGAAACAATCAG 59 1443866 1444326 TTTCTTTCAGTGCCCAATGC 60 NA Rattus norvegicus 81 Tlr11 ENSRNOG00000032368 ENSRNOT00000039925 2 1 1 87 15 27178023 27179263 TGCTCAAAGAATCAATGCCA 59 27179312 27179331 TTAAGGCTCACCAAAGTCAG 58 NA Rattus norvegicus 81 Atcay ENSRNOG00000020407 ENSRNOT00000041325 3 1 1 81 7 11373775 11373794 AAAGTCCCTGATCATCGTCC 60 11373836 11374634 GAACTTGACACTGATGAAGGG 59 NA Rattus norvegicus 81 Zfand1 ENSRNOG00000010342 ENSRNOT00000013905 3 1 1 82 2 93665665 93665777 CTAACAGCAAAGAAGCTGAGG 59 93665819 93665839 GTGATCCACCTTTCCAATGTG 60 NA Rattus norvegicus 81 Fbxl16 ENSRNOG00000022248 ENSRNOT00000039777 3 1 1 90 10 15184355 15184374 ATCGACAACTACTCGCTCTC 59 15184426 15185107 CCAACATCACCTCTAGACCA 59 NA Rattus norvegicus 81 Olr859 ENSRNOG00000047595 ENSRNOT00000073361 2 1 1 60 5 137574857 137574876 CATTGTCACCTTGATCCACC 59 137574897 137574917 ACTGAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 2 2 2 80 2 154526560 154526578 CCTCATCAGCAAGTACACG 58 154526102 154526519 AATCCAAGCAACAATCTGTAGG 59 NA Rattus norvegicus 81 RGD1311224 ENSRNOG00000009399 ENSRNOT00000012568 1 1 1 80 3 72862346 72862367 CTATTTCATCACATTTGGCCCT 59 72860783 72862307 GGGCTCTCAATAAACTTGACC 59 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000045694 ENSRNOT00000071001 1 1 1 60 3 74906412 74906433 ACTTCTTCTGTGACATACCTCC 60 74906373 74906394 TCATTCACAAAGATGTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 3 2 3 126 20 40667642 40701728 CACAGATTTACTCTGTGATGAGG 59 40701814 40701832 AGTGAACTCTGGATGTCGG 59 NA InUTR Rattus norvegicus 81 Nt5c2 ENSRNOG00000020179 ENSRNOT00000027351 1 1 1 80 1 266675044 266675064 ATTAGTGTCCATCGGCTATCC 60 266674031 266675003 TCAAAGACAAGTCCTCTGGT 59 NA Rattus norvegicus 81 Mbip ENSRNOG00000008610 ENSRNOT00000011419 1 1 1 80 6 77240173 77243489 TGACAGGACAGCTTAACCTC 60 77240112 77240130 GGGATGTTGAGAGGCTCTG 60 NA Rattus norvegicus 81 Rap2c ENSRNOG00000002529 ENSRNOT00000003414 1 1 1 104 X 138236834 138236852 CAGTTTGCCTCCATGAGAG 58 138234402 138236768 TCTCATTGGCTTGATATCCTG 58 NA Rattus norvegicus 81 Fabp7 ENSRNOG00000000814 ENSRNOT00000001079 3 1 1 80 20 40770316 40770337 GAACACAGAGATCAGTTTCCAG 59 40770375 40771052 CGAATCACAGACTTACAGTTCC 59 NA Rattus norvegicus 81 AABR07019102.1 ENSRNOG00000032106 ENSRNOT00000051173 3 1 1 80 15 89348089 89348109 TGGCTATGATGTTGAAGACC 58 89348028 89348047 AGTCTCATTACGCATGATCC 58 NA Rattus norvegicus 81 Mrgprx3 ENSRNOG00000014227 ENSRNOT00000019051 3 1 1 62 1 103299380 103323416 GAAAGCTTCACCGGTACAG 59 103299336 103299354 TGTGACTGCTATTGTCGAG 57 NA DesignNoJunction Rattus norvegicus 81 Glt8d2 ENSRNOG00000033579 ENSRNOT00000051181 1 1 1 80 7 27182363 27184575 TGTCTCGAATACGACAATGG 58 27184615 27184636 GGACTATAGGATTGAACTCCAC 58 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682,ENSRNOT00000086542 3 2 2 80 14 19424734 19424758 GGAGTAATTTGTCTACATCAGTAGG 59 19424794 19426394 AGTCCACTTTGTCTTGATTGC 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 1 4 4 80 4 85682354 85682373 AGCTCAAGTAGGTGAGATGG 59 85682416 85684388 TCTGTCATCCAGACTTGGT 58 NA Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000077058 3 1 2 84 12 22453769 22453883 AGTACTTTGGTCGGTGTGG 60 22453931 22453949 GTATGGAAGACACGGTCCA 59 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 3 1 1 62 3 61591083 61591101 CAGGTGTATTGTGCCAAGG 59 61591126 61591979 CCCTGGAAAGGATGATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Mre11a ENSRNOG00000009506 ENSRNOT00000012940 1 1 1 80 8 13333446 13338491 GATGAAGTTCGAGAGGCCA 60 13338535 13338553 ATCTGCACTGAAGGCTGAG 60 NA Rattus norvegicus 81 Zc3h15 ENSRNOG00000005256 ENSRNOT00000007276 1 1 1 80 3 71037025 71037043 AGAGCTGGTCAACGATGAC 60 71037085 71037571 GAGTCATCAACCTCATCACCT 60 NA Rattus norvegicus 81 Olr286 ENSRNOG00000018955 ENSRNOT00000025611 1 1 1 60 1 212632500 212632518 CCTCATGCCATAAGCTCCT 59 212632458 212632478 TCACTACCGAGTAAATCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap3m1 ENSRNOG00000011461 ENSRNOT00000016387 1 1 1 82 15 3443152 3443170 TACAGACTGAAGTGCCACC 59 3443214 3443910 ACACTCACCAAAGTAGTCCTG 60 NA Rattus norvegicus 81 Rilp ENSRNOG00000003784 ENSRNOT00000005039 1 1 1 93 10 63661538 63661918 CCAGAATTTCTTTGGCTTATGG 58 63661972 63661990 TTCTCCTTCCTGTGTCCTG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000089099,ENSRNOT00000077784,ENSRNOT00000078830,ENSRNOT00000080888 3 6 7 80 5 165996435 165996746 AGAAGTTAGAGCAGGCTCAG 59 165996374 165996394 TGTTTAGCCCAGTTACTGGAG 60 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000077334 1 1 4 80 2 149480357 149480378 AAGAAAGATACCAGGATGACAC 58 149480418 149481405 TTCCTCCTACCAGATTCAGG 58 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 3 3 3 87 9 12476112 12476131 GAAGTGTCAATTCGAGAGGG 58 12476181 12477188 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Dcp1a ENSRNOG00000016015 ENSRNOT00000021475 2 1 1 80 16 6583507 6583787 TCTAATAAAGAATGACTCCGGC 58 6583828 6583846 TGGTTGTCTTTGCTCTTGG 58 NA Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 1 2 2 80 2 183157305 183157323 TTGCAGCTGTGAATAGCAG 59 183152005 183157267 CTCCTTCCTGATTAAATACCTTGAC 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 2 2 2 80 18 76707445 76707465 AAACCCTGAGAAATGTTCCAC 59 76705400 76707405 CCAGTAACCGATCTACCTCAG 60 NA Rattus norvegicus 81 Kif28p ENSRNOG00000050602 ENSRNOT00000075426 1 1 1 80 13 97972946 97972964 AACGTGTATCTCAAGGCTG 58 97972272 97972902 TGGATTATCTGGCTTGTGG 57 NA Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 1 2 2 80 6 126216222 126216241 TTCCCTTCTCTGAAGAACAC 57 126216281 126239811 GCCTTCCAGGTACAATATAGAC 58 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141,ENSRNOT00000066975 2 2 2 80 7 49113291 49113310 GTGATGTGGAGACCCTAGAG 59 49076504 49113248 ATCCAGTCTCTGTTTGCCA 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102,ENSRNOT00000066191 3 2 2 80 5 27386277 27388311 TACGCCAACGACATTAACG 59 27388355 27388373 CTAAAGCCATTAGGCGGTG 59 NA Rattus norvegicus 81 Mir3102 ENSRNOG00000049574 ENSRNOT00000074461 1 1 1 62 1 165921236 165921254 CTATTGCGGGCTCTACTCC 60 165921192 165921210 CTGTGTACCTGTGGGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000074079 1 1 2 129 1 226742520 226760235 TCCGGTAGGAGAAGATGGA 59 226763723 226763741 CGTTCTAACTGCAGGTCCT 59 NA InUTR Rattus norvegicus 81 Cd300le ENSRNOG00000042825 ENSRNOT00000034741 1 1 1 60 10 103586449 103586469 TGATCCCATGTTTGAAGTTCG 59 103583370 103583391 TCTTGTAGTTGAACTTTCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487,ENSRNOT00000029757 2 2 2 80 15 48131612 48132977 GATGCCAATAGGAAGCGAG 59 48133020 48133039 CCAAATCTGCTTCCCTTTCC 59 NA Rattus norvegicus 81 Ccdc14 ENSRNOG00000021469 ENSRNOT00000033420 1 1 1 80 11 69285553 69285574 AGATACTGGGAATAACTCTCCG 59 69284566 69285514 TGCTGTTCTGTAAAGTTCTGG 59 NA Rattus norvegicus 81 Foxk2 ENSRNOG00000036663 ENSRNOT00000054919 1 1 1 82 10 110497393 110497413 GACCTCAATTTAATGGCTGAC 57 110497457 110499961 TTTGAGTCATCCTTTGGGC 58 NA Rattus norvegicus 81 Samd3 ENSRNOG00000039955 ENSRNOT00000061389 2 1 1 80 1 20155931 20155949 GTCAGTTGATCAGGTCTGC 58 20155247 20155890 CTGACTTCTTCCTCTTGAAACC 59 NA Rattus norvegicus 81 Rn60_X_0699.1 ENSRNOG00000051093 ENSRNOT00000076854 3 1 1 60 X 69558162 69558183 GGTGTTATAGTTGCTCAAAGAC 58 69558204 69558222 ACTTCTCAAGCTCTTGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103692138 ENSRNOG00000057664 ENSRNOT00000088294 3 1 1 60 4 72332657 72332676 CAAGCCGATGTACTTCTTCC 59 72332699 72332717 CACAGAGATGTACCAGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 2 2 2 80 4 177037411 177037430 AGAGAAGAGTTATCCCGACC 58 177033476 177037369 TGTAGATGATCTTGCACTGC 58 NA Rattus norvegicus 81 AABR07017658.2 ENSRNOG00000050394 ENSRNOT00000075194 2 1 1 69 15 29761072 29761090 TTACTCCTAGGCCTTCACC 58 29760883 29760901 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000021918,ENSRNOT00000090779 1 2 2 80 17 78826765 78829139 AACAAGTTGCCATGGTAGAC 59 78829177 78829200 AGTAGTAGAAAGTATTGTCCCTCC 59 NA Rattus norvegicus 81 Olr1644 ENSRNOG00000039435 ENSRNOT00000060428 1 1 1 122 15 28915380 28915400 GAACCAGGATAAGAGACTCTG 57 28910246 28910264 GTGTGGTTGATGAGGACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100360220 ENSRNOG00000046567 ENSRNOT00000060396 3 1 1 80 15 29976384 29976573 CAGATTTGCTGGGTGAGAG 58 29976322 29976341 CAGAGAAGAATTGGTTCCCT 57 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 1 2 2 80 11 83990372 83990391 AAAGTATTCTGTCGCTGCTG 59 83990432 83991149 CGGAGACAATCTGATTAGGTG 58 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 2 2 2 80 11 83990373 83990391 AAGTATTCTGTCGCTGCTG 58 83990433 83991150 ACGGAGACAATCTGATTAGGT 59 NA Rattus norvegicus 81 Pglyrp1 ENSRNOG00000013395 ENSRNOT00000018233 2 1 1 90 1 79791070 79791088 CAGACTCCTGTGAACAGCA 60 79791141 79794935 CCAATGAGGAAGTTGTAGGC 59 NA Rattus norvegicus 81 Mical3 ENSRNOG00000053203 ENSRNOT00000082982 3 1 1 80 4 153591802 153591820 ATGATCTTCGAGGTCTGGG 59 153589894 153591758 GCTGACGGATACTGATGTG 58 NA Rattus norvegicus 81 Chrm5 ENSRNOG00000006397 ENSRNOT00000008387 3 1 1 122 3 103968285 104018317 ACTCCTGCCAGATATTGGC 60 103968181 103968202 AGTGCTTTCATTGTAAGACTCC 59 NA InUTR Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793,ENSRNOT00000083088 3 7 8 116 6 64852801 64852824 GAAACAAGGGTGGTAAATATCCAG 60 64854383 64861609 GATCTTCTGCATCACTATATTCTCC 59 NA Rattus norvegicus 81 Rn60_4_1369.2 ENSRNOG00000050575 ENSRNOT00000075192 3 1 1 80 4 72092733 72092751 TCTCCTGGAAGGACAAAGC 59 72091727 72092689 ATCCGATCTGCACCTTCAG 60 NA Rattus norvegicus 81 LOC100361240 ENSRNOG00000049099 ENSRNOT00000047113 3 1 1 60 15 19429681 19429699 GAAGGAGCAGTTTGCTTGG 60 19429722 19429741 GTATTGGATGCCCTCATTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578,ENSRNOT00000081125 3 2 2 80 7 2982035 2982250 CGCCAATAGAAGGTATGCT 57 2981973 2981994 CTGTAGGATTCTGGATAATGGT 57 NA Rattus norvegicus 81 Olr666 ENSRNOG00000049947 ENSRNOT00000044273 3 1 1 60 3 77618301 77618319 TCTTGGATGCTTGTGTCTC 58 77618259 77618277 TCGTAAACCATGTCCACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561143 ENSRNOG00000046184 ENSRNOT00000075641 3 1 1 110 12 21868952 21922395 CAAACTCATCATTCATGCTCTC 58 21868863 21868881 AGTGAAGGATTCCTCTGGT 58 NA Rattus norvegicus 81 Rn60_X_0740.1 ENSRNOG00000051267 ENSRNOT00000076553 2 1 1 60 X 73140898 73140917 TGGAGCTGAAGGAAGAATGG 60 73140938 73140958 CTGTCATCTTCGGGTAAAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035751.1 ENSRNOG00000046696 ENSRNOT00000074863 3 1 1 80 12 21670233 21670253 CACTTCCTGAACAGAATCTGG 59 21669883 21670191 CTGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 Timm13 ENSRNOG00000019682 ENSRNOT00000026648 2 1 1 125 7 11677447 11677465 CAGGTGAAAGTGCAGATCG 59 11677627 11677870 GATGCATTTCTGCTCCGAG 59 NA Rattus norvegicus 81 LOC682489 ENSRNOG00000037960 ENSRNOT00000057735 3 1 1 95 13 98728874 98772765 GGGATTGGGAACATTCGTC 59 98728797 98728816 ATATTCAGCCAGAAGACGCA 60 NA Rattus norvegicus 81 Fastkd2 ENSRNOG00000023923 ENSRNOT00000002872 1 1 1 80 9 70469286 70470251 GCTTCCATGTCATCTTGATCC 59 70470290 70470311 TCTTCTTCCTCACAAATGTGAC 59 NA Rattus norvegicus 81 AABR07024972.1 ENSRNOG00000049177 ENSRNOT00000075287 2 1 1 80 16 23318664 23318683 TTCAGATACTGCCCAATCGT 59 23318724 23318975 TAGGCAGAAATCCTTGAGAGG 59 NA Rattus norvegicus 81 Kbtbd6 ENSRNOG00000011657 ENSRNOT00000015517 2 1 1 60 15 61692432 61692451 GCCCAGAGGAATTAAAGGAC 58 61692474 61692492 AAAGACTTGAGCTGTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk10 ENSRNOG00000003813 ENSRNOT00000005175 2 1 1 87 6 122471746 122471764 GAAACTCCTCCAACAGCAG 59 122463219 122471695 TTCCCATACCCTATGGTCG 58 NA Rattus norvegicus 81 Zfp236 ENSRNOG00000016303 ENSRNOT00000022086 1 1 1 80 18 79493731 79493750 ACATGTGTCCTTATTGCCAG 58 79489862 79493688 CCAGTTCGTATCTGTGGGT 59 NA Rattus norvegicus 81 Phyh ENSRNOG00000018044 ENSRNOT00000024362 2 1 1 80 17 77297010 77298771 ATATTCAACGGTTTCGAGCAG 59 77296950 77296971 CGTCTTTCATTACAGTCATCCC 59 NA Rattus norvegicus 81 RGD1562469 ENSRNOG00000029410 ENSRNOT00000046791 1 1 1 60 13 30800343 30800364 TACATGCGAATCTACAAGAAGG 58 30800304 30800322 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910829 ENSRNOG00000047507 ENSRNOT00000071447 2 1 1 60 4 117568169 117568187 CCTAGTGTCTGGTTCTTGG 57 117568127 117568145 CAGGCAAAGGAGAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr705 ENSRNOG00000034169 ENSRNOT00000042658 3 1 1 60 3 78429105 78429126 ACTCAACGATTCAAGTTCTGAC 59 78429066 78429084 TCAATGACATTGGGACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr640 ENSRNOG00000059418 ENSRNOT00000086249 1 1 1 60 3 76918167 76918187 TGTATCCACTCTTCAGCACAG 60 76918209 76918227 CATTTGGTCCACAGAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhg6 ENSRNOG00000019528 ENSRNOT00000026441 2 1 1 80 4 157890994 157891376 TAGGACACAAGGAGATGAATCG 60 157890935 157890954 GGTAGATCAGCTCAGTGGTC 60 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 3 2 2 86 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177272 88226823 TTTCTGGTATTTCCTCGGTCC 60 NA Rattus norvegicus 81 Rbm12 ENSRNOG00000049913 ENSRNOT00000026700 2 1 1 60 3 152176473 152176493 GGTAGTTTAAATGCTCCTCCT 58 152176433 152176452 TAGGAACACTTCCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr720 ENSRNOG00000006637 ENSRNOT00000008676 3 1 1 60 3 78716706 78716724 TAATCAGGAAGGGAGGTGG 58 78716664 78716683 AACAACTACAGTGATGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpe ENSRNOG00000009339 ENSRNOT00000034565 1 1 1 80 2 240447047 240447068 AGAAGAAGTGATAAGGCTACTG 57 240447107 240450056 TCTTGTTCTGAGAGCATTGAG 58 NA Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 1 2 2 80 19 37583531 37583553 CTGGAGTTATGTAGAAGTCTTGG 58 37583592 37583715 TGTACCAGTAACACCTCCTC 59 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 1 2 2 80 7 11275407 11276095 TGAGACAGATGACACGATGG 60 11275346 11275367 TCAATGATTCCGATGTGTAGGA 59 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000088955 3 1 2 83 1 82171742 82171761 AGACCTTCAGTCAAAGGCA 59 82171808 82171826 CAACACAGGGAGATCTGGG 60 NA Rattus norvegicus 81 Calm1 ENSRNOG00000004060 ENSRNOT00000064679 3 1 1 92 6 124223707 124224109 TTGACAAGGATGGCAATGG 58 124224161 124224183 CGTCTACTTCTTCATCTGTTAGC 59 NA Rattus norvegicus 81 Gc ENSRNOG00000003119 ENSRNOT00000004174 3 1 1 80 14 20293371 20293389 CAAGCACTCAGACTTTGCC 60 20293430 20298006 ATTTCTGCATCAATCTGTGAGC 60 NA Rattus norvegicus 81 Mir872 ENSRNOG00000041219 ENSRNOT00000062972 1 1 1 61 5 113657741 113657762 TTACTTGTTAGTTCAGGACCTC 58 113657784 113657802 CAGTTAGGAGGCTACTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682,ENSRNOT00000057798 3 2 2 80 10 48335374 48335392 AAGAAGACCTCAACTTCCG 57 48335435 48418278 AGTTGTTGGAATAGTCCCTG 57 NA Rattus norvegicus 81 Cacng2 ENSRNOG00000006226 ENSRNOT00000008414 2 1 1 88 7 119351850 119351868 AGTGAGAATGAAACCAGCA 57 119246325 119351798 CCTTTGAAGTTCCCTTCGA 57 NA Rattus norvegicus 81 Morf4l2 ENSRNOG00000002389 ENSRNOT00000003247 2 1 1 80 X 107396030 107397121 AGAGAAGGAACATTGTTGGT 57 107395969 107395987 TGTTGTCCACGAGTTTGAG 58 NA InUTR Rattus norvegicus 81 LOC100910540 ENSRNOG00000001387 ENSRNOT00000001871 1 1 1 138 12 21983922 21985024 TCGTCACGGGTAACTATGTC 59 21985125 21985143 CGGAACATTCTCTTCAGCC 59 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047415 ENSRNOT00000042300 1 1 1 60 4 93791077 93791097 GTTTCTTGGGTTCTTGTTGCT 60 93791229 93791248 CTGGGTCATCTGAATGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Tmem74b ENSRNOG00000009635 ENSRNOT00000012765 1 1 1 60 3 147226120 147226139 TTTCTTCTCTGAGGAGCAGG 59 147226161 147226180 GTTACCCAGTCTGGTATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sftpb ENSRNOG00000010761 ENSRNOT00000014505 2 1 1 82 4 100167371 100167807 GACATGCAGGAGCTAATGAC 59 100167852 100167870 GAAAGCGTCTTCCTTGGTC 59 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121,ENSRNOT00000018153 2 2 2 80 1 92108935 92110501 TCCATTACAAGAGCCAACTG 58 92108874 92108893 GCTCATTCGAAGCTACTGAC 59 NA Rattus norvegicus 81 Unc79 ENSRNOG00000008728 ENSRNOT00000011775 2 1 1 80 6 126981658 126984893 AGGAATTGCCCAAGTTATGGA 60 126984933 126984953 CAGTATTTGAGCACCTGAACC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 2 2 2 80 10 86876227 86876247 CCTTGCTTTGTTTGTCAAGAC 59 86876289 86877821 TCGGAAGAAGCCCTTACAG 59 NA Rattus norvegicus 81 Snrnp25 ENSRNOG00000020626 ENSRNOT00000027989 3 1 1 80 10 15686616 15687438 CAGCACATAAGCTGGTCCT 60 15686554 15686574 CTTCTTCCTGTCCTCTGTGAG 60 NA Rattus norvegicus 81 MGC108823 ENSRNOG00000019542 ENSRNOT00000050063 1 1 1 80 18 55576277 55576296 AGAGCTAGAGGGCTATTCCT 59 55576336 55583482 CTTCAAGCAAATAAAGCCACAG 59 NA InUTR Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000075504 1 1 3 84 12 22473604 22473626 GCAATACGTGAGCAACCTG 60 22473538 22473557 GAGAAACGATTCCAGAAGCG 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000050031 ENSRNOT00000073808 3 1 1 60 4 170194508 170194526 CGAGAAGCATCTGACTGAG 58 170194466 170194484 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galc ENSRNOG00000003759 ENSRNOT00000005015 2 1 1 80 6 122210595 122212947 ATATGACCGCCACAATTGC 59 122210533 122210552 CTGTCATCAATCCACTTCGT 58 NA Rattus norvegicus 81 Plekhj1 ENSRNOG00000019247 ENSRNOT00000026155 2 1 1 80 7 11785811 11785830 TCACTTTGAATGCTGTAGCC 59 11785871 11785968 CGTCTCATGTATTCGTAGCTG 59 NA Rattus norvegicus 81 Plekhj1 ENSRNOG00000019247 ENSRNOT00000026155 3 1 1 81 7 11785809 11785830 TATCACTTTGAATGCTGTAGCC 59 11785870 11785967 GTCTCATGTATTCGTAGCTGG 58 NA Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 1 1 1 74 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162419564 162423253 ACATTCAGCTCCACAACGA 60 NA DesignNoJunction Rattus norvegicus 81 RGD1559726 ENSRNOG00000034073 ENSRNOT00000047841 3 1 1 60 18 84162527 84162545 ACAAAGGATCTGGAGGGTG 59 84162591 84162614 ATGAATCTAGACCATTCTCTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Cldnd2 ENSRNOG00000037333 ENSRNOT00000056490 3 1 1 94 1 98488143 98488161 ACACTGCAAAGAATGCCTG 59 98487823 98488085 GAAGCCCGCAATAAACGAG 60 NA DesignNoJunction Rattus norvegicus 81 Sart3 ENSRNOG00000000702 ENSRNOT00000000891 1 1 1 80 12 48645210 48645231 CACTGATTATGTGGAGATCTGG 58 48645270 48646445 TCTTTGCTAGAGTCTTGTCTG 58 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 3 3 3 80 18 65506553 65506571 GACCAAGCTCCTGATTCTC 58 65506615 65507469 GGGTTCAGGTTCCTTTCTC 58 NA Rattus norvegicus 81 Cited2 ENSRNOG00000056940 ENSRNOT00000086790 2 1 1 297 1 12823587 12824080 AGGACTGGAAATGGCAGAC 60 12824341 12824359 GGAGTTGTTAAACCTGGCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Armc5 ENSRNOG00000019935 ENSRNOT00000027032 3 1 1 80 1 199656246 199656265 TCTAGCCAACTGCTGTACAG 60 199656307 199657623 AGAATGGTCACCAAAGGGAG 60 NA Rattus norvegicus 81 Ttc30b ENSRNOG00000059460 ENSRNOT00000050515 1 1 1 60 3 62760450 62760468 AGCAGAGGAAGAGTTGGAC 59 62760408 62760427 GGCATCCATGTTCATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam205a ENSRNOG00000042596 ENSRNOT00000068752 3 1 1 100 5 58288006 58288025 ATTACCGAGGATTGAAGTGC 58 58286830 58287335 AAGTCTCCTGGCTCTTGAC 59 NA Rattus norvegicus 81 Usp22 ENSRNOG00000032492 ENSRNOT00000050061 3 1 1 80 10 47429998 47430016 TGGTTCAAGTGTGATGACG 58 47429228 47429954 GTAGAAGAGCAGGTACCCT 58 NA Rattus norvegicus 81 Rnf145 ENSRNOG00000004602 ENSRNOT00000006436 2 1 1 80 10 30191659 30191681 TGTACTTTCTAGGGTCTAACCTC 59 30191718 30195742 CCTCCACTACCTGAACTAACTC 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866,ENSRNOT00000091221 1 2 2 80 2 114443393 114444048 TGTTGCTGGATAAGTTCACC 58 114444090 114444109 GCCCAATCTCAAAGAAACTG 57 NA Rattus norvegicus 81 Cyp2j4 ENSRNOG00000031004 ENSRNOT00000012977 3 1 1 80 5 119557320 119557338 GATCACCGGAAAGACTGGA 59 119555158 119557279 CTCTGGGTACTTTGACATTTCC 59 NA Rattus norvegicus 81 Snapc2 ENSRNOG00000001056 ENSRNOT00000001398 2 1 1 81 12 2539036 2539056 GTATGGATGGATCTTGCTGAG 58 2538532 2538993 CAATGGTGAGTACCTGGGA 59 NA Rattus norvegicus 81 Kctd17 ENSRNOG00000000231 ENSRNOT00000046563 3 1 1 92 7 119647622 119648736 AATCGGACAGGGATGAGAC 59 119648792 119648810 CCAATTTGCCATGCCTGAG 60 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411,ENSRNOT00000088588 2 2 2 83 1 218098550 218099959 GATGCTAGAGGTCTGCGAG 60 218098485 218098504 AGAGACAAGAAACGGTCCAG 60 NA Rattus norvegicus 81 Aatk ENSRNOG00000004392 ENSRNOT00000005839 1 1 1 80 10 109202349 109202369 GGGATCTTCACTGTCATTGTC 59 109199739 109202309 ATTCTCAAACTCCTTGAACCC 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 3 2 2 266 X 111122744 111130319 TCGAGAAAGAACAGCTCCG 60 111130549 111130567 TCGATGTGCCTAATAGCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391,ENSRNOT00000009241 3 2 2 80 13 48439136 48439154 ATCGAATTCAGCGAGTCCT 59 48439195 48439747 GCCAAAGTATTCCATATCCAGG 59 NA Rattus norvegicus 81 Slc45a4 ENSRNOG00000007818 ENSRNOT00000032620 1 1 1 80 7 114825280 114825298 TCGTCTCCATGAGCATCTC 59 114822520 114825236 GACTGTGGTGGACGTACTC 60 NA Rattus norvegicus 81 RGD1561149 ENSRNOG00000008113 ENSRNOT00000010688 2 1 1 80 5 147410783 147412519 TAAGAAAGGTTCTGCCAAGG 58 147410722 147410741 TCATCTCCTACAGATCCTGG 58 NA Rattus norvegicus 81 Cdhr4 ENSRNOG00000029586 ENSRNOT00000050702 2 1 1 80 8 116776571 116776590 TGATCACAGTCAAGACTGGG 60 116776633 116777546 GTTGAGGACACCTCAACCT 59 NA Rattus norvegicus 81 Sufu ENSRNOG00000019807 ENSRNOT00000026987 1 1 1 80 1 266144159 266147945 GTCAAGTACTGGTTGGGTG 58 266147989 266148007 GATGTTGGCAGAAGGACTC 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 1 3 3 80 14 28523031 28532855 TAACACAGAAGCTGAAATCTGG 59 28522972 28522993 CGTTCAAATGATTTCTGGTCTG 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 2 3 3 80 14 28523031 28532854 AACACAGAAGCTGAAATCTGG 59 28522971 28522991 GCGTTCAAATGATTTCTGGTC 59 NA Rattus norvegicus 81 Hoxd8 ENSRNOG00000042480 ENSRNOT00000067861 3 1 1 81 3 61627849 61627873 ATTCGTCCAGAATATTGGCG 59 61627917 61627935 TCTCATCTCAGGGAAACGA 58 NA Rattus norvegicus 81 Otop2 ENSRNOG00000028121 ENSRNOT00000038935 1 1 1 82 10 103876018 103876037 GTTTCTTTGAGTGCCAGTCG 60 103876077 103877618 GAGAAAGTAAGTCTGGACAATGAC 60 NA Rattus norvegicus 81 Pnoc ENSRNOG00000014231 ENSRNOT00000019117 1 1 1 80 15 48809568 48818457 CTTCAACCTGAAGCTGTGC 60 48809506 48809524 ATGGCTTTGGTGCAAAGAG 59 NA Rattus norvegicus 81 Tgfb1i1 ENSRNOG00000019965 ENSRNOT00000054980 1 1 1 80 1 199665597 199665724 CAAGGATCATCTATACAGCACAG 59 199665764 199665782 GAAGAGGAGAACGGAGGAG 59 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000015332 ENSRNOT00000046718 2 1 1 80 18 1148681 1149645 CCACTTGGAAGTCAAACCTC 59 1149688 1149706 AACAATATTGCTGACGCCA 58 NA Rattus norvegicus 81 Alg9 ENSRNOG00000010877 ENSRNOT00000029166 3 1 1 80 8 55218586 55225359 TCTTTATGGTACAGAACCATGG 58 55225400 55225418 AGAAGAGCCAAAGCAAAGG 58 NA Rattus norvegicus 81 Ap1s3 ENSRNOG00000049873 ENSRNOT00000072160 1 1 1 80 9 85393969 85404427 CTTTGGAAATGTCTGTGAGCT 59 85393909 85393932 CCACCTATTATAAACTCGTCAAGG 59 NA Rattus norvegicus 81 AABR07002768.1 ENSRNOG00000055096 ENSRNOT00000081294 2 1 1 73 1 83818447 83818466 GAACAGTGATGCTGAAGCAC 60 83818392 83818410 TGTCCTTCTGAGGCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 1 2 2 80 7 120214413 120214725 CAGATCCATACCAAGGATGCT 60 120214767 120214785 CCTGAGAGCCTCAATCCAG 60 NA Rattus norvegicus 81 Ganc ENSRNOG00000024563 ENSRNOT00000011369 2 1 1 80 3 112193667 112194691 AAAGTTAATGGCCCTTCCTC 58 112194734 112194752 TGCATGTTGAGGGATACCA 59 NA Rattus norvegicus 81 RGD1308923 ENSRNOG00000036876 ENSRNOT00000055361 3 1 1 126 5 172649692 172649711 GGAAAGTAAGAGTGAGCCGT 60 172649800 172649921 GTCAGGCAGAGATTCCTGG 60 NA Rattus norvegicus 81 Mrpl52 ENSRNOG00000039297 ENSRNOT00000060193 3 1 1 92 15 33071215 33072033 GAGAAGCTTGCAAGACGAG 59 33072089 33072107 TTCTTCCTGCAGTTTCTGC 58 NA Rattus norvegicus 81 L3hypdh ENSRNOG00000004503 ENSRNOT00000006284 3 1 1 92 6 94834152 94834170 CTTCGTGGAGTGTGAAGGT 60 94830584 94834096 ACATCCACTGTGAGGTCTG 59 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927 2 1 2 86 1 153734298 153742019 GCATGAAAGTAGCACTCAGC 60 153734231 153734249 GACTCACCTGCATGAACAC 59 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927,ENSRNOT00000023239 3 2 2 60 1 153734264 153734282 GGACTCCTCATCCTTCTCC 59 153734222 153734240 CGTTGTAGGGACTCACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2bd ENSRNOG00000060769 ENSRNOT00000084303 2 1 1 60 17 44834090 44834108 CGTGAACGACATCTTCGAG 59 44834048 44834067 CTTGTTGTAATGAGCCAGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bik ENSRNOG00000010359 ENSRNOT00000013977 1 1 1 89 7 124409067 124409455 CTATGCACAGACTTGCTGC 59 124409508 124409526 TTTCCCTGAGGTTGGTGAG 59 NA Rattus norvegicus 81 Rbm45 ENSRNOG00000010595 ENSRNOT00000042968 2 1 1 80 3 63223663 63225097 GAGAAGTTCAAGGTGTATGGAG 59 63225137 63225156 GCCCAAGCCTTTACTTTCTC 59 NA Rattus norvegicus 81 RGD1566369 ENSRNOG00000005017 ENSRNOT00000006662 3 1 1 60 17 88140469 88140487 CAACACTAAGATTGGCCCT 57 88140427 88140449 CTTCTTATTGTCTCCTCGAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mif4gd ENSRNOG00000003837 ENSRNOT00000005198 1 1 1 80 10 104160873 104163124 GAAGACTGCACTCAAAGATCC 59 104160813 104160831 CAGTCCTGCAGAGAATGGT 59 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 2 2 2 87 8 71728149 71728168 CAAGTAGAGGTGCTGTACAG 58 71727709 71728099 GTTTCTTGATCCGCTTGTG 57 NA Rattus norvegicus 81 Pabpc2 ENSRNOG00000014527 ENSRNOT00000019467 2 1 1 60 18 32965247 32965266 TTCTGAATGACCGCAAAGTG 59 32965289 32965307 TCTGCTTCTCGTTCTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc2 ENSRNOG00000014527 ENSRNOT00000019467 3 1 1 60 18 32965464 32965482 GTTCGTCAGCTTTGAAAGG 57 32965505 32965524 CTTCCCATTCATCTCATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfn ENSRNOG00000033153 ENSRNOT00000043959 2 1 1 60 5 151824243 151824261 GGTGACTACTACCGCTACC 59 151824201 151824219 CGATGATGCGCTTCTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsu1 ENSRNOG00000017595 ENSRNOT00000057827 2 1 1 80 17 80523722 80529341 TGAACCTTGGCATGAACAG 58 80523660 80523678 AAGTCAAGTCCAGGACCTC 59 NA Rattus norvegicus 81 Cfp ENSRNOG00000025811 ENSRNOT00000038909 1 1 1 84 X 1314258 1314515 TTGCCCTGTAAATGGAGAG 57 1314563 1314581 TTCATCACAGCTGATGGAC 58 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 2 3 3 80 1 273945314 273945335 AGGACCACATCATAATCATCCC 60 273945371 273946207 CTATTATGTTGACCTTCACCAGAG 59 NA Rattus norvegicus 81 Palldl1 ENSRNOG00000042312 ENSRNOT00000064850 2 1 1 100 16 31367861 31367879 TCATCCAGAAGCTGAGGAG 59 31367943 31386869 ACACAACGAACTGACTCTG 58 NA Rattus norvegicus 81 Rnf166 ENSRNOG00000013777 ENSRNOT00000018591 1 1 1 80 19 55293086 55294621 TTGCAACAAGAAGGTGACAC 59 55293025 55293043 CAGTTAGCCATCTGCTCCT 59 NA Rattus norvegicus 81 Vwf ENSRNOG00000019689 ENSRNOT00000026643 2 1 1 80 4 158164457 158164475 GAAATGCAAGAAACGGGTG 58 158164516 158165915 GGTCTCTTAACATTCACCTCTC 58 NA Rattus norvegicus 81 Tceal7 ENSRNOG00000037645 ENSRNOT00000046091 1 1 1 167 X 106775022 106775867 AAGAGAAGGAATCTGTGTTCAC 58 106776284 106776303 CCATAGGGATGTTCCTCCTC 59 NA InUTR Rattus norvegicus 81 RGD1306195 ENSRNOG00000031013 ENSRNOT00000050030 2 1 1 84 5 54481793 54482034 CAGGCAAGTGGGATATTGTG 59 54481728 54481746 AAGCTTGAACTGGACTGGA 59 NA InUTR Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000088679 1 2 5 80 9 81657786 81660722 CTCTACTACCCTAAGGTACCC 58 81660764 81660782 GACTTCCTGCATGTCTGAG 58 NA Rattus norvegicus 81 Olr466 ENSRNOG00000060260 ENSRNOT00000077607 1 1 1 60 3 73274680 73274699 TCAGACCAGAAGACCATCTC 59 73274721 73274740 GAGCAATGAAGAGGAGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr466 ENSRNOG00000060260 ENSRNOT00000077607 2 1 1 60 3 73274828 73274849 TGTCCAAGAATGTTTGTGTCTC 59 73274869 73274888 CCATTCAGGAAGCCAAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000080241,ENSRNOT00000087636 2 3 3 80 2 62204096 62204120 GATTATCATACGTATTCTCCGAGAC 59 62204158 62208287 AGTAACTCCATAGCCCAGC 59 NA Rattus norvegicus 81 Prkrip1 ENSRNOG00000001426 ENSRNOT00000001937 1 1 1 99 12 23516307 23518971 GATGTCATGGGTTCCAGTG 58 23519034 23519052 TGGCATCCATGTAGTCCTG 59 NA Rattus norvegicus 81 Btbd2 ENSRNOG00000018788 ENSRNOT00000025391 3 1 1 80 7 11937957 11937976 GATGGCTACTACTTCCACTG 58 11938018 11938715 GAGTACAGGAACTTGAGCAG 58 NA Rattus norvegicus 81 Olr546 ENSRNOG00000047728 ENSRNOT00000046809 2 1 1 60 3 75184127 75184146 GCCTGAGGAACAAAGATGTG 59 75184086 75184107 CCACTCCTCTCCCTATAAACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap4e1 ENSRNOG00000022938 ENSRNOT00000037390 2 1 1 80 3 119514224 119519059 AGACGATGAAAGGACAAGTG 58 119519099 119519120 GTGACATTGTGATTTAACTCGG 58 NA Rattus norvegicus 81 Ctu1 ENSRNOG00000018334 ENSRNOT00000024690 2 1 1 165 1 99602890 99602908 GAAGATCTCTTCGGAGGCT 59 99603037 99603781 CAGCATTGTGACCTGTCAC 59 NA Rattus norvegicus 81 AABR07060952.1 ENSRNOG00000061169 ENSRNOT00000058282 1 1 1 80 4 101639706 101640092 TCTGGATCCAGGAAACTAGAG 58 101640134 101640152 AGACTGATTGTCCAATGGC 58 NA Rattus norvegicus 81 Slc9a3r1 ENSRNOG00000003232 ENSRNOT00000004351 2 1 1 85 10 103729312 103729330 CTGGTAGAGCCAGCTTCAG 60 103729378 103729615 TCTTGGGCATTTAGCTCCTC 60 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 3 2 2 80 13 111159902 111159924 CTAGAATTCTACACAGCCTTCTC 59 111159962 111227051 GAACACAATCCTCTTCCTCAG 59 NA Rattus norvegicus 81 AABR07017868.2 ENSRNOG00000050388 ENSRNOT00000073686 1 1 1 80 15 31989076 31989281 CTCCATTTGTCTTGCAACCA 59 31989323 31989342 ACAGTCTTCGTCTCCATCAC 60 NA Rattus norvegicus 81 LOC100359777 ENSRNOG00000043422 ENSRNOT00000064181 2 1 1 80 10 31615794 31617802 AATAACCACACTGAAGTGGTC 58 31617841 31617862 AGACACAGAGATTCCAATACAG 58 NA Rattus norvegicus 81 Ppp2r1a ENSRNOG00000011282 ENSRNOT00000015019 3 1 1 80 1 60732223 60733090 TCTGCATCAATGTGTTGTCTG 59 60733131 60733150 CAGCCATACGAAGAACTGTG 59 NA Rattus norvegicus 81 Gkn2 ENSRNOG00000009256 ENSRNOT00000067651 3 1 1 80 4 119175239 119175258 ATCAAGATGGACCACAAAGC 59 119175301 119175952 CATGGCATTCATTGTCTGC 58 NA Rattus norvegicus 81 AABR07017900.1 ENSRNOG00000054909 ENSRNOT00000072382 3 1 1 73 15 32355640 32355659 TTACTCCTAGGCCTTCACCT 60 32355830 32355848 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Hist1h1a ENSRNOG00000017175 ENSRNOT00000023054 1 1 1 60 17 43614382 43614403 TAAGAAACCCAAGAAGACTGCT 60 43614343 43614362 CTTCTTCGGTGTCTTGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1640 ENSRNOG00000048857 ENSRNOT00000047436 3 1 1 60 15 28806137 28806155 ACCTTTGTGGACATCGGAG 60 28806095 28806114 TGTAGGAAAGGAGGATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actrt2 ENSRNOG00000012586 ENSRNOT00000016781 2 1 1 60 5 172077778 172077799 ATGGGAATGTCATTTACATCGG 59 172077739 172077757 GGTGAGAACAGGACCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0733.3 ENSRNOG00000051047 ENSRNOT00000076926 1 1 1 60 X 72456453 72456471 TGAGGAATATGGTGCTGGA 58 72456411 72456429 CTTGCCACAGTAATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl20 ENSRNOG00000036918 ENSRNOT00000055442 3 1 1 86 4 183657321 183658527 CCCTTAGTTCAGTCAGATTCAG 58 183658574 183658592 TAAGGACTGTTTGCCAAGC 58 NA InUTR Rattus norvegicus 81 LOC100363012 ENSRNOG00000033916 ENSRNOT00000051693 1 1 1 60 5 159606778 159606797 CGTCCATCCAGATGAATGTG 59 159606819 159606838 AACTGACCATTAAATCGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.1 ENSRNOG00000043413 ENSRNOT00000073306 1 1 1 138 18 2182271 2182289 TTTGTGATGGAGGAGGGTC 59 2181404 2182170 GATGGCGAGTTATCACAGAG 58 NA Rattus norvegicus 81 LOC102556119 ENSRNOG00000029678 ENSRNOT00000004902 1 1 1 66 10 36419708 36419726 GAGAAGAACCCTGGAAAGC 58 36414317 36419681 AGACTGCTATTACATCCAAGAG 58 NA DesignRelaxed Rattus norvegicus 81 Tecrl ENSRNOG00000001912 ENSRNOT00000002621 1 1 1 80 14 26677039 26697185 GAAGTTTCACAAAGCATGTCC 58 26700295 26700313 TCCTTCAAGTACGGACCAC 59 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 1 2 2 80 10 11140944 11140962 CTGTACGAGGTGATCCCAG 59 11141005 11142012 GATAAAGCCCTTGTGAGGGT 60 NA Rattus norvegicus 81 Arvcf ENSRNOG00000001888 ENSRNOT00000044635 1 1 1 80 11 86740777 86742189 AAGCGAAAGGGAAGAAGGA 59 86740715 86740733 CTTTCGCAGCTTCAGTACG 59 NA Rattus norvegicus 81 Prkci ENSRNOG00000009652 ENSRNOT00000012924 1 1 1 80 2 115948721 115948739 TTGTCACCCTCAAACTGGA 59 115948325 115948677 TTCTGCTCCATCATGTCCC 60 NA Rattus norvegicus 81 Lsm8 ENSRNOG00000058677 ENSRNOT00000089007 3 1 1 86 4 45558573 45560502 AGATAATGTAGCAGTCATTGGG 58 45560549 45560567 GAGTTCAGAGGTTCTGCTC 58 NA Rattus norvegicus 81 Olr1620 ENSRNOG00000030687 ENSRNOT00000047008 1 1 1 60 15 27401328 27401348 TCCTCTGCCTCTCATTATTCC 59 27401368 27401388 TGCTAAGACCAGAGTATACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002120.1 ENSRNOG00000060288 ENSRNOT00000084168 3 1 1 60 1 66644069 66644089 GATTAGAAATGCGAGGTTGGA 59 66644029 66644047 GCCCATTACCACATGACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911101 ENSRNOG00000005555 ENSRNOT00000007338 2 1 1 60 7 60099239 60099257 CAGAGTTATGTGGTGGGAG 57 60099281 60099299 CACTCAGATCCACCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 1 2 2 80 3 114362111 114362928 TCTTGTGTTTAGCGTATGCTG 59 114362970 114362988 TGATGACAAACAAGGCCTG 58 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 3 2 2 80 7 126661147 126667200 CTGTCATCACAGACACCCT 59 126667244 126667262 ACTCATCTGTACTGGTGGG 58 NA Rattus norvegicus 81 Alk ENSRNOG00000008683 ENSRNOT00000011630 3 1 1 80 6 23160159 23160178 ATCTGGAGAAAGATGACACG 58 23160221 23166709 GGATTAGTTGGTTTGCCCT 58 NA Rattus norvegicus 81 AABR07065493.1 ENSRNOG00000046275 ENSRNOT00000057179 3 1 1 81 6 131607166 131607185 CACAACTGGCTATAACCTGG 58 131606131 131607125 AATGTAAATCTGATCTCCAGCC 58 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 1 2 2 80 7 124001737 124004079 GGCCAAACAGAATTTGTATGAC 59 124001678 124001696 GCTGCAAACTTCATCTGCT 59 NA Rattus norvegicus 81 LOC100912370 ENSRNOG00000049711 ENSRNOT00000071385 1 1 1 60 3 77825720 77825738 TATGCAAGACCCACTTCTG 57 77825678 77825699 CAGCATTCATAAACGTAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrn1 ENSRNOG00000006802 ENSRNOT00000008879 1 1 1 60 4 139672185 139672205 TCATCCATCCCACTGAATGAG 60 139672227 139672245 CACTGTCACCTTCCCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shd ENSRNOG00000049983 ENSRNOT00000074767 3 1 1 80 9 11090430 11093013 CTGTCCCTCAGAAGTAACCAG 60 11090370 11090388 GTGCTGTCCTAGTACCACC 60 NA Rattus norvegicus 81 Hrh1 ENSRNOG00000007420 ENSRNOT00000009775 2 1 1 60 4 146456270 146456288 CTCCAACTGTCTTCAGCCA 60 146456312 146456330 ATGTCGAGACGGAAACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565617 ENSRNOG00000047836 ENSRNOT00000043673 2 1 1 60 3 19320505 19320526 TGGCATTAGTTATATGCACTGG 59 19320466 19320484 GATGAGGAGTTTGGGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcrc2 ENSRNOG00000036742 ENSRNOT00000021514 1 1 1 80 1 190578648 190578668 AGTTACTCAGATTCTGGGCTC 59 190578706 190580978 GTAGGCAGCATTGATAACATCTC 60 NA Rattus norvegicus 81 Bbox1 ENSRNOG00000059519 ENSRNOT00000080175 2 1 1 80 3 101430113 101430133 TTTGTTGACCTGATGAACAGC 60 101427187 101430074 CCAGTTGTCAAAGGTAATCCAC 60 NA Rattus norvegicus 81 AABR07042039.1 ENSRNOG00000032088 ENSRNOT00000047160 3 1 1 95 X 146403247 146403265 AATGCCAAAGAGAAGGGCT 60 146401565 146403192 GTGCTTAGAGTTTCCATTAGTCC 59 NA Rattus norvegicus 81 Tiam2 ENSRNOG00000016728 ENSRNOT00000065386 2 1 1 80 1 44426583 44426604 GAAGATCTACGAGGACTATGGG 59 44426644 44427785 AGCTCTGTTACCTCCTTCTC 59 NA Rattus norvegicus 81 Tiam2 ENSRNOG00000016728 ENSRNOT00000065386 3 1 1 80 1 44418879 44421678 AAGTCTTACGTGAAGGATCTG 58 44421718 44421738 ATCTTGGGTAAGAAAGGTCTC 57 NA Rattus norvegicus 81 Potec ENSRNOG00000016992 ENSRNOT00000052342 3 1 1 80 17 89602717 89602735 GCAAGACCCTCTTACAACC 58 89586164 89602679 GATATCACCTCTAGTTCAGATTCTG 59 NA Rattus norvegicus 81 AABR07068851.1 ENSRNOG00000059237 ENSRNOT00000089735 3 1 1 80 9 121970937 121970955 CTTGGAAGGAGACAGATGC 58 121969256 121969281 CCTTCTTGACCTCTACATCTG 58 NA Rattus norvegicus 81 Ppat ENSRNOG00000002128 ENSRNOT00000002905 2 1 1 80 14 33606184 33606204 AAAGTCTTCAGAGACTGAAGG 57 33606246 33607859 TCATGGCAATATCTCGCAC 58 NA Rattus norvegicus 81 RGD1309108 ENSRNOG00000008138 ENSRNOT00000010743 3 1 1 80 8 45098163 45103557 CAAAGCAGCTCAAGAATTACCA 60 45098104 45098122 AAGACTGACCTCTTGGGAC 59 NA Rattus norvegicus 81 Mbnl2 ENSRNOG00000010737 ENSRNOT00000014300 2 1 1 80 15 105756861 105756880 CCATGATCGACACAAACGAC 60 105756921 105756942 ATTTGCATTTCTCCCTCATGC 60 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 1 2 2 80 16 24586316 24588409 ACTCAAACAGGACAGAGGA 58 24584351 24584370 TCATCACTGAAATCCAAGGC 58 NA Rattus norvegicus 81 Nmu ENSRNOG00000002164 ENSRNOT00000002941 3 1 1 80 14 34359859 34367034 TGGAATGAGATTCCTGAAGCT 59 34371456 34371475 AAGCTTCCTCAATGCAACAG 59 NA Rattus norvegicus 81 Olr1293 ENSRNOG00000047227 ENSRNOT00000075675 3 1 1 60 15 36302550 36302568 TGTTGCCATCTGTAACCCA 59 36302508 36302529 AGAAGTGTAAATCTGAGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 1 3 3 80 18 72606338 72608172 ACCAGAAGGCATATAGGAAGG 59 72608214 72608232 CGCACTATCACTTAGGCAC 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000033897 1 1 8 80 6 127958483 127963479 GTATCAAGTCCTACTAAAGAGCC 58 127963516 127963537 GGTATGAGGTCTTCTATGAAGG 58 NA Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 2 2 2 80 1 101413104 101413123 CAGAGAATGAGTTCTGCCCA 60 101413165 101413412 GTACTCGAACCATGCTAGGA 59 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192,ENSRNOT00000065720 1 2 2 80 9 96804890 96804909 AAGTCCTTACCCAACTCTCC 59 96804950 96806121 GTTACTTGTCTGGCTGATGTG 59 NA Rattus norvegicus 81 S100a11 ENSRNOG00000010105 ENSRNOT00000013393 3 1 1 81 2 193867082 193868356 CTTCACGAAGAACCAGAAGG 59 193868400 193868418 ATCTAGCTGCCCATCACTG 59 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811,ENSRNOT00000007371 3 2 2 80 6 33204624 33205159 TACAGTGTGCAAGGATCTGG 60 33205199 33205220 ATGATGTAGAGACCCATCACAC 60 NA Rattus norvegicus 81 Ceacam20 ENSRNOG00000019260 ENSRNOT00000026060 3 1 1 80 1 80885932 80886539 AGGTGAACTATGGTCCTGAC 59 80886582 80886600 CTTCCATCACCTCAACCAC 58 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 1 2 2 81 3 2644812 2644934 TGAATTGTATTGGGTGCAACC 60 2644973 2644995 CAGATTACCATGAGTGTTGTACC 59 NA Rattus norvegicus 81 Cdh3 ENSRNOG00000020129 ENSRNOT00000027273 3 1 1 80 19 38716784 38718953 CAACTTCATCATCGAGAACCTG 60 38718994 38719012 TAGTCAAACACCAGCAGGG 60 NA Rattus norvegicus 81 Slc9a7 ENSRNOG00000004150 ENSRNOT00000005623 2 1 1 80 X 2612593 2614270 GTGTATGATAACCAAGAGCCA 58 2614312 2614330 TCCATAGGTCAAGGTGAGG 58 NA Rattus norvegicus 81 Mmp12 ENSRNOG00000030187 ENSRNOT00000011727 1 1 1 80 8 5614344 5615655 ATATTGGAGGTACGATGTGAG 57 5615697 5615715 CTGATTCCTGGGAAGTGTG 58 NA Rattus norvegicus 81 Clptm1 ENSRNOG00000018255 ENSRNOT00000024779 2 1 1 80 1 80553062 80553414 GATTCAGTGAAGGTTGCCC 59 80553000 80553018 GACACTGTGGACAATGGAG 58 NA Rattus norvegicus 81 Bcl7b ENSRNOG00000032705 ENSRNOT00000041798 1 1 1 80 12 24544741 24544905 AATAGAGACCCAGACCACTG 59 24544680 24544698 ACTACAGGTTGGTCCACAC 59 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 2 2 2 80 3 11265231 11265251 CCCATTCTCAAGAAGTCTCCT 59 11265290 11267264 TTACAATGTCCAGTTTCCAGAG 58 NA Rattus norvegicus 81 LOC690435 ENSRNOG00000029253 ENSRNOT00000046749 2 1 1 80 6 128114785 128117534 GACTTGGCAACTAGACAGG 58 128114723 128114741 AGGCTTGTGTTTACTGAGC 58 NA Rattus norvegicus 81 Olr1642 ENSRNOG00000047738 ENSRNOT00000060437 1 1 1 60 15 28852719 28852740 CACTGTTGTCACTCCATTACTG 59 28852680 28852698 CTTCACTTCCTGGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 2 2 2 88 17 82080658 82080676 TCTTATGTGGGACATCGGT 58 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 1 2 2 80 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384458 148384562 CATGATCTCCTTCTCATCGG 58 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032,ENSRNOT00000021196 3 2 2 131 7 126423887 126429684 GCAGAAAGGTTCTGGAGGA 59 126423774 126423793 ACTTCTCCTTGAGTAGGTGG 59 NA Rattus norvegicus 81 Irs4 ENSRNOG00000046790 ENSRNOT00000076904 2 1 1 80 X 113004706 113014352 CGAAATGAGAGTGACTACACTG 59 113004647 113004668 AGTAGACGAAGATGGAGTTCTG 59 NA Rattus norvegicus 81 RT1-T24-4 ENSRNOG00000042905 ENSRNOT00000047439 3 1 1 82 20 3196334 3196352 TGCTGTGGCCATTATTGGA 60 3196397 3196593 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Cndp1 ENSRNOG00000027739 ENSRNOT00000034970 3 1 1 80 18 81485032 81486474 AGAGGTGGATGGGAAACTG 59 81484970 81484988 GTGCTCACGGCATTAATCC 59 NA Rattus norvegicus 81 Lrrn2 ENSRNOG00000009691 ENSRNOT00000012844 2 1 1 264 13 49660619 49660637 TACATATAGGACAGCGCCC 59 49727504 49727522 CAAGATAGCAAGAGGGCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lipn ENSRNOG00000057173 ENSRNOT00000078405 3 1 1 86 1 252380482 252382120 GCCTTTAGCTTTGATGAAATGG 59 252382166 252382185 GTACAACTTCTCCTGACCTG 58 NA Rattus norvegicus 81 Th ENSRNOG00000020410 ENSRNOT00000027682 1 1 1 80 1 216074302 216074321 CAAGATCAAACCTACCAGCC 59 216073436 216074259 AGAGGCATAGTTCCTGAGC 59 NA Rattus norvegicus 81 LOC100912420 ENSRNOG00000049595 ENSRNOT00000046638 1 1 1 60 5 69277354 69277374 GCAAAGAGGTGTATGTATCCA 58 69277314 69277334 ACTGAATTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362909 ENSRNOG00000028279 ENSRNOT00000055889 1 1 1 87 4 161700823 161705402 CCAAACTTCAAGAAGTCCCAG 59 161705451 161705469 TATTGGGAAGTGGGTTGGG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000088680 3 1 9 60 9 81528009 81528030 TAGCCATCATCTAAGTTTGCCT 60 81528050 81528069 CAAGCTACACCATCATCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763,ENSRNOT00000003021 3 2 3 86 14 34557031 34557984 CTCAGGAGAAATAAGAAAGGTGTG 60 34556753 34556771 GCGCTCTTCACCATAAAGC 60 NA Rattus norvegicus 81 RGD1565713 ENSRNOG00000039060 ENSRNOT00000048255 1 1 1 60 15 34584332 34584351 AAGGAAAGGAGGAGAGTCAC 59 34584372 34584392 ACAAAGGAACAACTCCATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5i ENSRNOG00000000064 ENSRNOT00000000072 3 1 1 80 14 2325886 2325905 AGAGAAGAATAGCAGCGGAG 59 2325948 2326361 CATCTTCAGCTTCTGCCAG 59 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 1 2 2 80 1 89321901 89322045 CTCACGGTGCTCTATCCTC 59 89321839 89321857 CAGCTCTACTGACTGTCCC 59 NA Rattus norvegicus 81 Slbp ENSRNOG00000037162 ENSRNOT00000040229 3 1 1 80 14 82357240 82358878 ACCTGAAAGCTTTACAACGC 60 82358921 82358939 TCATCTTCTTCAACTGCGC 59 NA Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 2 2 2 80 4 6306807 6306830 CAATGATCTTGGACAGTATGACAG 60 6306280 6306770 CACATCCAGATCCGAAATGAG 59 NA Rattus norvegicus 81 Enox2 ENSRNOG00000030622 ENSRNOT00000048498 1 1 1 80 X 135972853 136050721 CTATCTGTCTGGTTACAGAATTCG 59 135972796 135972814 TGGGCAAAGTCAACATGGA 60 NA Rattus norvegicus 81 Zmat3 ENSRNOG00000010119 ENSRNOT00000013858 2 1 1 81 2 118721741 118723808 TCCAGAGCAATTCAGGTCC 59 118721678 118721696 CTTGGAGTAACGCACATGG 59 NA Rattus norvegicus 81 Ttc38 ENSRNOG00000015916 ENSRNOT00000021582 3 1 1 80 7 126720752 126720774 GAAAGGGATCTATTCTTTCGGAC 59 126720812 126722678 ATAGATAGAGCCTCTTTGGCG 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802,ENSRNOT00000066101 2 2 2 80 3 116945178 116945199 TCCCAAGAAATGATGAGATGGT 60 116945235 116945492 AGGTACTCAACCTATAGTATCTGC 59 NA Rattus norvegicus 81 Rn60_X_0707.2 ENSRNOG00000051133 ENSRNOT00000076093 3 1 1 127 X 69786780 69786801 TGTCTTCTCACAAGACTTTCAG 58 69786674 69786697 TGTCTTCTCTTAGAGTTGTACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302,ENSRNOT00000077687 2 2 2 80 7 144081294 144081405 TCGGAAAGAAAGGAGAATCTG 58 144081811 144081830 CAGGACAATTCCCTTCTGAG 58 NA Rattus norvegicus 81 Zhx2 ENSRNOG00000005417 ENSRNOT00000007326 2 1 1 80 7 97632097 97693040 AGACACTGATATGAAGCCTCC 59 97693079 97693100 AGTGTTTCAGAAGGATTTCAGC 59 NA InUTR Rattus norvegicus 81 LOC100912427 ENSRNOG00000030807 ENSRNOT00000058700 1 1 1 60 1 186641182 186641202 CAATGTAAGGAACGGATACGG 59 186641142 186641163 TACAAATACGTCTTCCTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 2 2 2 80 3 71792426 71798397 CTTGCTTCTTAATATGGCTCTC 57 71792367 71792385 TTGTTCCTAGTGACTCCCA 58 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476,ENSRNOT00000065743 3 2 2 91 9 94323144 94324703 CTATGTGGGAGGATGATGC 58 94324758 94324776 GATGAGATTCTCCCAGCAG 57 NA Rattus norvegicus 81 Slc30a6 ENSRNOG00000005856 ENSRNOT00000007919 3 1 1 80 6 22209541 22212686 TTCGTTTGGGTTTGAAAGAC 57 22209480 22209498 AGTATAAAGAGGGCTCCCA 57 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000083572 1 1 2 80 19 57651078 57651816 AGGACCTTGTAGAGACTCTC 58 57651859 57651877 GTCCTTCTCGGTCTTTGTC 58 NA Rattus norvegicus 81 Iqck ENSRNOG00000036758 ENSRNOT00000055096 1 1 1 82 1 188619930 188620114 TGAGTGGCTGTACAACCAG 60 188620160 188620178 GCCATTCCTCCACAAATGG 59 NA Rattus norvegicus 81 Fbxo46 ENSRNOG00000008815 ENSRNOT00000012082 1 1 1 60 1 80042760 80042778 AGCAGCTTCAGGTGATGAG 60 80042799 80042820 TCCAGGTTTGATAACATACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r6 ENSRNOG00000052154 ENSRNOT00000079924 2 1 1 60 1 60045596 60045617 TGCTATACTTTATGGACACAGG 58 60045636 60045656 GAAGGAGGTATGAGAGTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml3 ENSRNOG00000031955 ENSRNOT00000046667 3 1 1 60 17 70072612 70072632 TAGATGAAATGATACAGGCGG 58 70072651 70072672 AATTCCTCATAGTTCACTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11f ENSRNOG00000002005 ENSRNOT00000002745 2 1 1 80 14 23996031 23996051 AATAAGCCATCGTTTAGCCTC 59 23993529 23995187 CATTCTTATCCCACATCGACTG 59 NA Rattus norvegicus 81 RGD1562218 ENSRNOG00000019169 ENSRNOT00000025948 3 1 1 202 19 57604957 57604975 AAGAAAGAGTCCTGGAGCG 59 57603519 57603966 CTTGGATCTCCTGTCCTCC 59 NA DesignRelaxed Rattus norvegicus 81 Drg1 ENSRNOG00000018590 ENSRNOT00000025241 1 1 1 86 14 83468924 83468942 TCGTTTGAACAGCAAACCC 59 83464682 83468874 TCACTCTGAGGACAAGTGG 59 NA Rattus norvegicus 81 LOC686442 ENSRNOG00000016952 ENSRNOT00000022747 2 1 1 149 7 12171235 12171253 TCAGCAGATTTCTAGGCCC 59 12174387 12174405 ACTTGCCATTGATGTACGG 58 NA DesignNoJunction Rattus norvegicus 81 Ms4a6a ENSRNOG00000020991 ENSRNOT00000033795 3 1 1 81 1 227923909 227926577 TGACTAAGCCTTTGGTTCAG 58 227923847 227923869 GAGAGTATAACAAGGCCTATGAG 58 NA Rattus norvegicus 81 Nap1l3 ENSRNOG00000029087 ENSRNOT00000049956 2 1 1 60 X 95060906 95060927 AAGACCTCAAAGATGTTACCCA 60 95060867 95060887 GAGTCTTCTGTAGGCTGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr10 ENSRNOG00000046729 ENSRNOT00000047255 3 1 1 60 X 95345172 95345191 TGTGATGGCTTATGACTGCT 60 95345210 95345232 CATGATGAGACAATATCGCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 1 2 2 80 9 113587794 113587815 AAGATTATGGGAAGTACAGAGG 57 113584946 113587753 TTGGTCTCACACTCTTGTC 57 NA Rattus norvegicus 81 Ddx21 ENSRNOG00000043099 ENSRNOT00000068184 3 1 1 80 20 32225422 32225442 AAGACTTCAGTGACATCACCA 59 32224977 32225380 TTCGTTCGATTTGACCACC 59 NA Rattus norvegicus 81 RGD1563104 ENSRNOG00000031294 ENSRNOT00000043728 2 1 1 60 X 96531092 96531116 CATACGAATAAGGATCAAGAATCCC 60 96531130 96531152 CCTCTTTAACAGATTCCTCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr694 ENSRNOG00000006415 ENSRNOT00000008396 1 1 1 60 3 78112618 78112636 CATTGTCCTCACCATCTCC 58 78112576 78112596 AGTGAGAAAGAAGTACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chic1 ENSRNOG00000037919 ENSRNOT00000076490 2 1 1 81 X 74201231 74201249 AGTGAGCGAGGAGAATCTG 59 74201290 74211362 GGTATTTATCACAGTGATGTGGC 60 NA Rattus norvegicus 81 LOC100910928 ENSRNOG00000048744 ENSRNOT00000071756 1 1 1 60 13 9465512 9465530 TTGACACTCCTGGTTACAC 57 9465554 9465572 TGGTCCTGATGATGTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015525.1 ENSRNOG00000056900 ENSRNOT00000087833 2 1 1 60 14 61750520 61750538 CACTGAATGCAATCCACTG 57 61750561 61750580 TGCTGTTTCAGAACACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554167 ENSRNOG00000030162 ENSRNOT00000043609 2 1 1 60 14 81043727 81043750 GATCAGGAGATCACTAAGGTAGAG 60 81043767 81043787 CAAAGTCCAGAAGTTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 3 1 3 60 X 70567201 70567364 GGAGAGGTCCCAAGATTCTG 60 70567384 70567405 AGGTAGATAACCAGAGTGACTC 59 NA DesignNoJunction Rattus norvegicus 81 Mlst8 ENSRNOG00000009667 ENSRNOT00000014269 2 1 1 82 10 13841617 13841730 CGTCACAGCTTCTTCAGAC 59 13841553 13841571 TCTGATGGCCACCATACTC 59 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380,ENSRNOT00000090265 1 2 2 80 18 77371585 77372234 ATAGTCAGGGATGAAGCCAC 59 77371524 77371542 GTACTGCACAATGGTGGAC 59 NA Rattus norvegicus 81 AABR07017870.1 ENSRNOG00000045525 ENSRNOT00000060310 2 1 1 80 15 32076333 32076571 CTCCAATTAAATTGGGTGAGCA 59 32076612 32076630 AGCTATGGATCCCTCTGGA 59 NA Rattus norvegicus 81 Ascc1 ENSRNOG00000056647 ENSRNOT00000085229 2 1 1 80 20 29568239 29594725 GAAGTGTTCCAAGGATCGTG 59 29594766 29594786 ACCAACATGCCAATAGTTAGG 58 NA Rattus norvegicus 81 AABR07049524.1 ENSRNOG00000022150 ENSRNOT00000030319 3 1 1 100 5 125862756 125862774 CTGCAAACTCAGCCTTCTG 59 125862658 125862676 CCTTGGTTTGAACCTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529 1 1 3 80 20 3980906 3981959 AAGAACCCAACAGGTTCCA 59 3982001 3982021 GTTCAGCTTGTCACTAATGGA 58 NA Rattus norvegicus 81 RGD1565183 ENSRNOG00000037673 ENSRNOT00000057158 1 1 1 60 1 84573772 84573791 CCACCATCAACAAGAATGCT 59 84573813 84573832 TTCTTTCGGATCATGTGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 1 2 2 80 13 51194018 51199865 CAAGAGACACAAAGAAGACCT 58 51193958 51193977 ATATAGGAAGCCAGCAACAG 58 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324,ENSRNOT00000015516 1 2 2 110 6 127647472 127649516 AAACTGTCTCCAGGGTATCG 59 127647381 127647399 ACGTCATGTTCAGGGATGG 60 NA Rattus norvegicus 81 Trmt112 ENSRNOG00000021132 ENSRNOT00000028695 1 1 1 88 1 222168213 222168337 CGGACACCTTAAACTTGGC 59 222168389 222168407 CACATGGTGCATCTTCCTC 59 NA Rattus norvegicus 81 Ak4 ENSRNOG00000045738 ENSRNOT00000070967 2 1 1 80 5 120281489 120301649 ACTGGCTATTAGATGGATTCCC 60 120301686 120301708 TGATTACTAGGTCCACATCACAG 60 NA Rattus norvegicus 81 LOC100359587 ENSRNOG00000049342 ENSRNOT00000060304 1 1 1 81 15 31141171 31141289 GATAAACTTTCTCCTGAGAGTTGC 60 31141328 31141347 AGAGGCTTCTTCAGAGACAG 59 NA Rattus norvegicus 81 Pgk1 ENSRNOG00000058249 ENSRNOT00000077604 1 1 1 80 X 77268008 77270220 AATAACCAAAGGATCAAGGCTG 59 77270261 77270279 GCTCATAAGCACAACCGAC 59 NA Rattus norvegicus 81 Rps15 ENSRNOG00000024603 ENSRNOT00000029791 1 1 1 83 7 12282437 12282455 ATCATTCTGCCCGAGATGG 60 12282272 12282391 CATCTCGGGTTTGATCTCCA 60 NA Rattus norvegicus 81 Tp73 ENSRNOG00000024707 ENSRNOT00000055398 2 1 1 80 5 171366701 171366720 CCAATATGTGGATGACCCTG 58 171363898 171366661 GTGAATTCTGTTCCTACCTGTG 59 NA Rattus norvegicus 81 Fibin ENSRNOG00000004699 ENSRNOT00000006203 1 1 1 60 3 101547101 101547122 GATGTTCACGAAATTGATCTGG 58 101547062 101547080 ATCGAAGTAGCCTCGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir103-2 ENSRNOG00000035496 ENSRNOT00000053619 2 1 1 60 3 123833686 123833704 GCTTCTTTACAGTGCTGCC 60 123833726 123833746 TTTCATAGCCCTGTACAATGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 2 2 2 80 8 72210892 72221729 GTTTGCTCCTTACGAGATTGTC 60 72210833 72210855 CTTATGGCACATATACAACTCCG 60 NA Rattus norvegicus 81 AABR07016863.1 ENSRNOG00000057795 ENSRNOT00000074803 1 1 1 80 15 2532558 2532576 GAAGAAGGGAGACGGAGAG 59 2532619 2535248 CGAGTCCATCCTCTTTAGGT 59 NA Rattus norvegicus 81 Capn10 ENSRNOG00000045623 ENSRNOT00000074160 1 1 1 80 9 100111899 100112106 AACCAGAATAGACAGACAGTCC 60 100112396 100112415 ATCACTGCCATGAAGGAGAC 60 NA Rattus norvegicus 81 Fzd8 ENSRNOG00000059244 ENSRNOT00000058837 3 1 1 60 17 63001390 63001409 GTTTCTGTTAGCTGGCTTCG 60 63001431 63001450 TCCTTGTTGCTTGATGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911637 ENSRNOG00000048471 ENSRNOT00000070854 2 1 1 60 3 149741418 149741438 TCAACTTCTCAGAGTTCTCCA 59 149741460 149741478 TCTTTAGCAGACATGGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btg2 ENSRNOG00000003300 ENSRNOT00000004408 2 1 1 86 13 50915484 50916746 ACTGACCGATCATTACAAACAC 59 50915419 50915437 ATCTTGTGGTTGATGCGGA 60 NA Rattus norvegicus 81 Rhno1 ENSRNOG00000028517 ENSRNOT00000039086 1 1 1 90 4 161681558 161681577 TTATGAATCTCACCAGCAGC 58 161680561 161681505 AGGTAACACCCAGGAAGTG 59 NA Rattus norvegicus 81 Ppp1r7 ENSRNOG00000016974 ENSRNOT00000022854 2 1 1 80 9 100495549 100495567 AACTTGGTGAACCTTCGTG 58 100495608 100498122 GAGTTTGTTATTGTTCTCCAGG 57 NA Rattus norvegicus 81 Rpa2 ENSRNOG00000013005 ENSRNOT00000017549 3 1 1 80 5 150959085 150959103 CCATATCTCAGCTGCTCTC 57 150959144 150960134 CAATAGTGACCTGTGAAATCTC 57 NA Rattus norvegicus 81 Ctnnbip1 ENSRNOG00000016313 ENSRNOT00000055562 1 1 1 64 5 166491770 166491789 TACATTCAGCAGAAGGTCCG 60 166491816 166492435 CTGGCAGTCAGATTTGACC 59 NA DesignRelaxed Rattus norvegicus 81 Impact ENSRNOG00000045844 ENSRNOT00000073771 3 1 1 80 18 4338565 4338584 CTCCTATCACAGACCGAAGG 59 4338626 4340332 CAAGAACCTTCTTCACCTGG 59 NA Rattus norvegicus 81 Thg1l ENSRNOG00000005539 ENSRNOT00000007917 1 1 1 80 10 31050672 31050692 TGGACAGAGTGATGAGTACAG 59 31049509 31050632 AGAGTCATGAACTTACTGGCT 59 NA Rattus norvegicus 81 Adipor1 ENSRNOG00000004143 ENSRNOT00000005551 3 1 1 92 13 51259085 51259103 CTGTGATGTACATCACCGG 58 51259156 51259432 GATGAGACTGGAACCATATGTC 59 NA Rattus norvegicus 81 LOC686911 ENSRNOG00000050100 ENSRNOT00000072588 3 1 1 87 14 34194475 34204666 AAGCAGATACGGACAATCCA 59 34194407 34194425 AAGGAGTACTTGGAGGCAC 59 NA Rattus norvegicus 81 AABR07000595.1 ENSRNOG00000030796 ENSRNOT00000045386 1 1 1 113 1 19521617 19521635 GAATCTCCGTGTCCATGTG 58 19521224 19521447 ACAGGGTCATTCTCTGACG 59 NA Rattus norvegicus 81 Zfp612 ENSRNOG00000016971 ENSRNOT00000022757 3 1 1 80 19 41565365 41565384 TAGAGGAAGGAGAGGATCTG 57 41561238 41565323 CAGTACATTCAGTCCAGAGG 58 NA Rattus norvegicus 81 Lgals1 ENSRNOG00000009884 ENSRNOT00000013538 1 1 1 80 7 120154458 120154477 AGCAACCTGAATCTCAAACC 59 120154519 120155723 GTTCAACACAAAGCTCTTGG 58 NA Rattus norvegicus 81 Scg5 ENSRNOG00000007542 ENSRNOT00000010679 2 1 1 81 3 105247204 105247222 GTTCAGCCGAGAATTCCAG 59 105239409 105247159 TTTCTTGTTCCACTTGCCC 59 NA Rattus norvegicus 81 Auts2 ENSRNOG00000000885 ENSRNOT00000001182 3 1 1 80 12 28229420 28229439 TCCAATCCTATCGATGTGGC 60 28229482 28230618 AGGATCTGTCAACCTTGGG 59 NA Rattus norvegicus 81 Zfp46 ENSRNOG00000049975 ENSRNOT00000072132 1 1 1 60 5 154651780 154651798 CTCATCTCATCACGCACCA 60 154651822 154651840 CACTCGGTACACTCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 1 2 2 80 3 120729883 120729902 TGACAAGTCAACACAAACCC 59 120729945 120749195 GACTGCCTTATGGAAGCCA 60 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 1 2 2 80 4 56857997 56859680 CTTTGCTCAGTTGTACTCTACTC 59 56857939 56857958 GCAGCCATGATAAAGAGGAC 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000079126 1 1 5 60 20 4046285 4046303 CAGTCGGGAAACACATCTG 59 4046327 4046345 ACATCCTTCCTTCGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March9 ENSRNOG00000046245 ENSRNOT00000072468 1 1 1 92 7 70343851 70344144 TCTGCATAGGTCTCATCGTC 59 70343778 70343796 AGTTCAGGACCTTCCACTG 59 NA Rattus norvegicus 81 AABR07017676.1 ENSRNOG00000046956 ENSRNOT00000071501 2 1 1 60 15 29987574 29987689 GGATAAACTTCCTCCTGAGAG 57 29987534 29987554 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Cemip ENSRNOG00000012442 ENSRNOT00000036343 2 1 1 80 1 146124770 146124791 TTTCAAACTGTTCCAGACAGAG 59 146124196 146124731 GTCCATTCCACATCTTGAACC 59 NA Rattus norvegicus 81 Nup133 ENSRNOG00000017919 ENSRNOT00000024182 2 1 1 80 19 56724304 56726037 TGTGACTAAGTTGTCTGTTTGC 60 56724245 56724263 GACAGTGCCACCAAATCAG 59 NA Rattus norvegicus 81 Atad2 ENSRNOG00000025604 ENSRNOT00000008508 1 1 1 80 7 98014258 98014278 AATATCCCTTCGTTTGCTCCA 60 98014318 98016255 TTCTTGTACCTCTTCAGGCAG 60 NA Rattus norvegicus 81 Serping1 ENSRNOG00000007457 ENSRNOT00000009817 3 1 1 80 3 72167475 72167493 GTCCACCAGACACTAAAGG 58 72166464 72167431 TATGGCTAGATCTGGGCTG 58 NA Rattus norvegicus 81 Nutm1 ENSRNOG00000005111 ENSRNOT00000006876 2 1 1 80 3 103742731 103745119 CAGATGGATCCTCTCCATTACC 60 103742672 103742691 AGGGAAGTGTACTGAAAGGG 59 NA Rattus norvegicus 81 Mir879 ENSRNOG00000041321 ENSRNOT00000063074 1 1 1 60 4 21673686 21673708 CTAGATCCAGAGGCTTATAGCTC 60 21673648 21673667 AAAGCTTGAAGCCATAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr725 ENSRNOG00000006716 ENSRNOT00000008762 2 1 1 60 3 78836731 78836751 CTGTGGCTGTGTTCTATACTG 59 78836770 78836791 CTGAGGGTGTAGATTAAAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 2 3 3 80 12 25485033 25485051 AGAATGAGTCTGAAGGCCC 59 25485668 25486326 CTTTGATTTCTTCTGTTGCTGG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 1 3 7 161 15 34668518 34668861 AGCTCAGTGTAATGGAAGCA 60 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 2 5 7 80 15 34644703 34645133 GCTACTGGTAAGGGAGACTC 59 34644642 34644662 AGTACACAAGCGATAACTGAC 58 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296,ENSRNOT00000082105 1 2 2 80 6 64281547 64281567 GGAATACCACAACATACACGA 58 64281607 64284502 TGTGGACTTCCTCTGTATCTG 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 3 2 2 80 17 81233748 81233854 CAGGCTTTAACTCTTCTAGGAG 58 81233895 81233913 AGCGAAATCCCTTGAACAC 59 NA Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 3 2 2 109 19 44094850 44094869 TCTTCACCCTCAGACATCAC 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 1 1 1 60 4 56450995 56451122 GGGTTCTTCGGTACTACTCTG 60 56450955 56450974 TGCCTTGGTAACTCTGACTC 60 NA DesignNoJunction Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000078372,ENSRNOT00000029634 2 3 3 80 8 13872215 13873975 ATTCCAGTGTGGGAAACAG 58 13872153 13872171 GCTGATGTCACTCGTACTC 58 NA Rattus norvegicus 81 Ins2 ENSRNOG00000020405 ENSRNOT00000027656 3 1 1 123 1 215857862 215857999 GCAAGCAGGTCATTGTTCC 60 215857757 215857775 GTGAGAACCACAAAGGTGC 59 NA InUTR Rattus norvegicus 81 Gng5 ENSRNOG00000038205 ENSRNOT00000058172 1 1 1 60 1 78546130 78546149 TGCAGAATGCTCAACATGAC 59 78546167 78546190 CTGAAGGGATTTGTACTTGAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex19.1 ENSRNOG00000036670 ENSRNOT00000054928 1 1 1 80 10 110346868 110346886 ATTGGAGCAAGTGTGAAGC 59 110346929 110347075 CAACAGGACCGTAGACTCTC 60 NA InUTR Rattus norvegicus 81 Mc5r ENSRNOG00000016685 ENSRNOT00000022364 3 1 1 60 18 64115254 64115274 TCAATAACAAGTCTTCCGCCT 60 64115295 64115314 AGAGTTAGGAACACCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ago2 ENSRNOG00000008533 ENSRNOT00000011898 2 1 1 80 7 114356900 114357049 GAGATCAGCAAATTGATGCGA 60 114356840 114356860 CTCATCTTTCACCATGATCCC 59 NA Rattus norvegicus 81 Faim2 ENSRNOG00000053258 ENSRNOT00000085033 1 1 1 80 7 141172600 141172618 CTTGGAACCTGATTCTGCT 57 141171520 141172037 TGGTGTTGTAGTAACTGGAC 57 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 2 2 2 60 2 86474439 86475032 AAGGACCTTCTGTCATTTACAG 58 86474400 86474418 GACATTCACACTCCTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Pde8a ENSRNOG00000019005 ENSRNOT00000025797 2 1 1 80 1 143140699 143140717 AGGCAAGCATAAAGACAGG 58 143140760 143143067 CTCTGATTGGAAACTTCGCT 58 NA Rattus norvegicus 81 LOC100911363 ENSRNOG00000045747 ENSRNOT00000072756 2 1 1 80 1 91058810 91058830 GCTTTGATACTGACCGATCAG 59 91058633 91058768 GATTCAGGTGGAATCCTGC 58 NA Rattus norvegicus 81 Rabgef1 ENSRNOG00000000895 ENSRNOT00000001196 1 1 1 80 12 29976354 29976372 CAAGACAGGCCAAGAAGTC 59 29968794 29976311 TCCTCGATGCTTAAATCCCT 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325,ENSRNOT00000070819 3 3 3 80 9 95078904 95078922 GCTTAGAGTCTGGACAGTG 57 95078200 95078860 AGTCTGTACTCCTTGAGCT 57 NA Rattus norvegicus 81 Ier5l ENSRNOG00000024846 ENSRNOT00000036770 1 1 1 71 3 9037702 9037720 CCTGATCAGCATCTCCCTG 60 9037649 9037667 TTCTTGTGCAGCTTGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ier5l ENSRNOG00000024846 ENSRNOT00000036770 3 1 1 82 3 9037702 9037720 CCTGATCAGCATCTCCCTG 60 9037638 9037656 ACACCAGGAGGTTCTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 1 2 2 85 20 32124114 32133340 CAGTTCAAGGTTATCCTGCTC 59 32124049 32124067 CTCCTCAATGCAGTTTGCA 59 NA Rattus norvegicus 81 Tdrd12 ENSRNOG00000012719 ENSRNOT00000017021 1 1 1 80 1 91743470 91749718 CAAGCCAGACTTCGATACC 58 91743408 91743427 TTTCTGTACCTCTGTCTCCT 57 NA Rattus norvegicus 81 Cabyr ENSRNOG00000047436 ENSRNOT00000071392 3 1 1 87 18 4086401 4086511 GTTTAGAGAAGGGAATTCGTCTC 59 4091685 4091703 CACTCCTTCTGCCCATCTC 60 NA Rattus norvegicus 81 Adgrg5 ENSRNOG00000039891 ENSRNOT00000061270 1 1 1 80 19 10497001 10497019 TGGCCTTCTTCTCCTTCAG 59 10496728 10496958 GGAAGAAACCATAGAGCGAG 58 NA Rattus norvegicus 81 Rps4y2 ENSRNOG00000031041 ENSRNOT00000043543 2 1 1 60 4 182746122 182746140 GGTCCATGTGAAAGATGCC 59 182746164 182746182 CACGAAGATGTTGGAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1 ENSRNOG00000056219 ENSRNOT00000086390 3 1 1 80 4 163248521 163251847 GCTGAGAAATATTCAGAGGAGTC 59 163248463 163248483 GGATTTCTCGTTTAGCTTCCA 59 NA Rattus norvegicus 81 Pabpn1 ENSRNOG00000042195 ENSRNOT00000021096 3 1 1 81 15 33558312 33558332 TTCTCAGACAAAGAGTCAGTG 58 33558373 33558477 TGGGAATCACCTTGATTTGTC 59 NA Rattus norvegicus 81 Klhl14 ENSRNOG00000015418 ENSRNOT00000020697 1 1 1 80 18 12531287 12534955 GAATCATTTGAAAGGCTTCTCC 58 12531228 12531248 AGTATATTCCACTGGTCACCT 58 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 1 2 2 80 5 173375163 173377741 TGATTCTGCCAGAAAGATGAG 58 173377782 173377801 AGGTAGTCCTGTTTCAACCT 58 NA Rattus norvegicus 81 Wdr19 ENSRNOG00000002932 ENSRNOT00000003991 3 1 1 80 14 44722058 44722077 GCTTCTACCTCATGTCTCCT 59 44720889 44722016 GCTTCTTTGTACCTTCCGTC 59 NA Rattus norvegicus 81 Vom2r24 ENSRNOG00000049838 ENSRNOT00000072660 2 1 1 81 8 3974541 3975946 CAATGAGACTGATATGGATCAGTG 59 3974483 3974501 TTTCTGTAGGCAGTGGGTC 59 NA Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 2 2 2 80 17 1062400 1062421 ATCAACTGGAATGAGGATAGGG 60 1061523 1062361 AACACTTTGATGAACCACCTC 59 NA Rattus norvegicus 81 Ccdc102a ENSRNOG00000025843 ENSRNOT00000030229 2 1 1 80 19 10525469 10525487 ATACCTCCAAGTTGACCGC 60 10525531 10527322 CCAGCTTATCCTCTCGCTC 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 3 1 2 81 4 161728494 161728983 CTTTCCCTCAAGGTAGGCC 60 161729027 161729046 TCACAGTACTCTCGGTAGGA 59 NA Rattus norvegicus 81 RGD1359127 ENSRNOG00000016399 ENSRNOT00000021939 2 1 1 130 7 12256624 12256642 TAGAGCAGATCCTGGAGGA 59 12257248 12257266 GTAGATCTGCTCCTGCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Uba1 ENSRNOG00000019164 ENSRNOT00000031115 1 1 1 80 X 1735298 1736328 CTTAGTGGTTTCCAGGTGGT 60 1735237 1735256 ACGGCTATGACAGAACTCAC 60 NA Rattus norvegicus 81 LOC680045 ENSRNOG00000047468 ENSRNOT00000073445 2 1 1 87 8 117223547 117223568 AGTGTTCCTACAGAGATGTGAG 59 117230210 117230614 GTAGGGACCTTTGTCGTAGG 60 NA Rattus norvegicus 81 LOC680045 ENSRNOG00000047468 ENSRNOT00000073445 3 1 1 89 8 117223547 117223568 AGTGTTCCTACAGAGATGTGAG 59 117230213 117230616 CAGTAGGGACCTTTGTCGT 59 NA Rattus norvegicus 81 LOC684480 ENSRNOG00000046377 ENSRNOT00000072081 1 1 1 80 10 34435294 34435316 GTGTCTTGTATAATCCAGAACCC 59 34432718 34435255 TCTGGGTAGGAAGACATCTG 58 NA Rattus norvegicus 81 LOC684480 ENSRNOG00000046377 ENSRNOT00000072081 2 1 1 80 10 34435300 34435321 GCAACGTGTCTTGTATAATCCA 59 34432723 34435262 GTAGGAAGACATCTGCAATCTG 59 NA Rattus norvegicus 81 Klhl5 ENSRNOG00000008421 ENSRNOT00000004003 1 1 1 80 14 44814527 44818577 AATGGATTCAACAAAGGGAGC 59 44814467 44814485 TTCATGTTTGCCACAGGAG 58 NA Rattus norvegicus 81 Pold3 ENSRNOG00000018411 ENSRNOT00000024875 1 1 1 80 1 165109645 165113486 AGAATGGACATTCTTGCCAC 59 165107865 165107884 CAGTCACAGCTAACTTGGAC 59 NA Rattus norvegicus 81 Olr1627 ENSRNOG00000012510 ENSRNOT00000016674 3 1 1 60 15 26887877 26887897 AATACTGCTGGGTAACTTCCT 59 26887918 26887937 AGTGTGAAGTCGTGAGTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq2 ENSRNOG00000011624 ENSRNOT00000049961 1 1 1 80 3 176597317 176597335 GTCATCGAACAGTACTCGG 58 176592793 176597273 CACAATCTGGTCCACTCTG 58 NA Rattus norvegicus 81 LOC102552474 ENSRNOG00000039615 ENSRNOT00000060737 2 1 1 60 X 14755919 14755938 ACAAGAAAGAGCAACTGAGG 58 14755878 14755897 TTACCATAGAATCGGTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd35 ENSRNOG00000025108 ENSRNOT00000056225 3 1 1 80 2 198815459 198815477 GCAGCTTTCAGAGGAAGTC 59 198815520 198815706 TGGTTCTTCTGGGTATCCTG 59 NA Rattus norvegicus 81 Gsx2 ENSRNOG00000002266 ENSRNOT00000003080 3 1 1 188 14 35652159 35652177 TCACCATCACCACCATCAG 59 35651313 35652007 GTATCTGAGCCTCCCATGG 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 3 2 2 99 8 117065069 117065517 GTTCAAGCACCAGATGCTG 60 117065580 117065598 TTCCTCCACGGAGAAAGAC 59 NA Rattus norvegicus 81 Tpd52l2 ENSRNOG00000015122 ENSRNOT00000020373 1 1 1 80 3 177004532 177004553 CGATAAGTATGCCTGTCATGAG 59 177005786 177007772 CAACCTTAGACTTTATGGTCCC 59 NA Rattus norvegicus 81 Psma8 ENSRNOG00000030363 ENSRNOT00000044541 1 1 1 100 18 6145968 6150368 CTAAAGCAGAAATATACCCAGAGC 60 6150423 6150445 GTCTGATACAATCTTGGGATACC 59 NA Rattus norvegicus 81 RGD1311747 ENSRNOG00000011293 ENSRNOT00000015130 1 1 1 80 16 32535184 32535202 ATGATCCTCCTGAGTTCCA 57 32534045 32535143 CAGGAGAATCTCTGAAATACCC 58 NA Rattus norvegicus 81 Ntpcr ENSRNOG00000019922 ENSRNOT00000026965 1 1 1 80 19 58568424 58576003 TCCTAAGGAATGCTGTCCC 59 58576047 58576065 TGAACAGCTCCATCTTCCC 59 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 1 3 3 80 20 34588141 34588161 TGTCAAGACAAAGAAGTGCAG 59 34585737 34588100 TTGTTGTAAGCTCTGAACGG 59 NA Rattus norvegicus 81 Gpr21 ENSRNOG00000042269 ENSRNOT00000063938 1 1 1 82 3 21764416 21764434 TCAAATACTGCACTGCAGG 58 21764479 21765087 TCTGAACAGCATTCATTCCC 58 NA InUTR Rattus norvegicus 81 Gpr21 ENSRNOG00000042269 ENSRNOT00000063938 2 1 1 82 3 21764417 21764435 CAAATACTGCACTGCAGGC 60 21764479 21765088 CTCTGAACAGCATTCATTCCC 59 NA InUTR Rattus norvegicus 81 Siglec15 ENSRNOG00000033588 ENSRNOT00000045278 1 1 1 60 18 74409252 74417291 CTCCAGATGGGATCACCTG 59 74409210 74409229 CTGTGTTGAGAGCATTTCCC 59 NA DesignRelaxed Rattus norvegicus 81 AC117925.7 ENSRNOG00000061571 ENSRNOT00000083404 3 1 1 177 4 114767025 114767043 AAGACCTGGTTCCAGAACC 59 114766788 114766806 CGAAGAGTGACGAGTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Acta1 ENSRNOG00000017786 ENSRNOT00000024084 2 1 1 80 19 56674702 56674857 CTTTATCGGTATGGAGTCTGC 58 56674642 56674661 TCCTTCCTGATGTCGATGTC 59 NA Rattus norvegicus 81 Acta1 ENSRNOG00000017786 ENSRNOT00000024084 3 1 1 82 19 56674705 56674860 TTCCTTTATCGGTATGGAGTC 57 56674643 56674661 CCTTCCTGATGTCGATGTC 58 NA Rattus norvegicus 81 RGD1564827 ENSRNOG00000017806 ENSRNOT00000039754 2 1 1 80 17 4119587 4120633 TTGTCAAGAACAGCATGGG 58 4119525 4119543 TTCCACAGTGGTTACCCTG 59 NA Rattus norvegicus 81 RGD1309362 ENSRNOG00000038960 ENSRNOT00000043736 2 1 1 60 18 55506902 55506920 CCCTTCACTGACCTTCCTC 59 55506942 55506962 GAACTTCAGGCATTTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309362 ENSRNOG00000038960 ENSRNOT00000043736 3 1 1 60 18 55506893 55506911 GAGCATCATCCCTTCACTG 58 55506934 55506953 GCATTTCTTCAGAGTCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr2c ENSRNOG00000015720 ENSRNOT00000021639 1 1 1 80 19 10578697 10578842 ACAGGCTTGGTTTAATCCC 58 10577119 10577137 ACTCTTCACATGTGCAGTC 58 NA Rattus norvegicus 81 LOC683156 ENSRNOG00000031461 ENSRNOT00000047872 2 1 1 92 17 2824680 2826818 TTTCGAAACAAATCCCAGGC 60 2824607 2824625 AGGGATCTTCTGAGTGTGC 59 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 1 1 1 89 1 276012166 276012184 AAACAGCTCCTCCGATTCC 60 276011624 276011873 GCTTCTTCCAAACTTTCCCG 60 NA DesignNoJunction Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 2 2 2 81 6 136749133 136749271 CATGTACCCTACAGGGACC 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 3 2 2 81 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749317 136749335 GCAATCATGGTGGTACAGC 59 NA Rattus norvegicus 81 Klrb1c ENSRNOG00000007811 ENSRNOT00000010312 3 1 1 80 4 162548897 162549540 GACTCAGTGTCTTCGTGAG 58 162549584 162549602 CAGTCCCATTCTCTTGAGC 58 NA Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 3 2 2 80 14 38230952 38230970 TGGGAATCAGGTTTCAGTG 57 38231013 38231816 GCTTCCGCTTCTTTAATCTC 57 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380,ENSRNOT00000046025 2 2 2 80 1 189262340 189262358 GAGCACATATGGACGAGGA 59 189262401 189262682 CAATCCGGTAGCTTGAAGAG 59 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 3 2 2 80 3 11708863 11708881 CATGTCCCTGATTCAGCCA 60 11708925 11712686 CACTGTAGAGTCTGCACGA 59 NA Rattus norvegicus 81 Smarca4 ENSRNOG00000009271 ENSRNOT00000013165 1 1 1 80 8 22715268 22715287 AGAAGTCTTCCAGCCATGAG 60 22715330 22715985 CCTCATCTTCCTCCTCGTC 59 NA Rattus norvegicus 81 Wfdc3 ENSRNOG00000042162 ENSRNOT00000065751 1 1 1 80 3 161209124 161209142 CTCTTCCTCATGAACGCAC 59 161197472 161209082 TTCACCTCTTAATTCGTGCTC 59 NA Rattus norvegicus 81 LOC100362219 ENSRNOG00000024053 ENSRNOT00000061058 3 1 1 94 X 5885039 5886716 AAAGCCTACATGCCAACCT 60 5884963 5884986 CACCAAATAACTCTTCACTAGGTG 60 NA Rattus norvegicus 81 Mep1b ENSRNOG00000049345 ENSRNOT00000074116 1 1 1 80 18 15073824 15074361 TACAGCTGCACTTCTTCCT 59 15073762 15073781 TGAACTTTGGATCATGCCAC 59 NA Rattus norvegicus 81 Olr713 ENSRNOG00000046126 ENSRNOT00000041870 2 1 1 60 3 78340509 78340529 AGAAGACCATTTCCTTCACAG 58 78340469 78340487 CCACCAAATAAGTGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ang2 ENSRNOG00000025562 ENSRNOT00000032536 3 1 1 60 15 28104083 28104101 CAGCACTATGATGCCAAGC 59 28104041 28104060 TCTTCATCATGCTTTCGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr921 ENSRNOG00000050939 ENSRNOT00000071350 2 1 1 60 7 3900556 3900576 TTCTCCTTGCTATCATGTCCT 59 3900596 3900616 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam181a ENSRNOG00000048412 ENSRNOT00000075399 3 1 1 60 6 128975312 128975330 CTGAGACTGCTCCACTACC 59 128975353 128975372 ATCTTGAGTGATTCCGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887 3 2 3 113 4 161953912 161953932 GACAAAGAGAATAAGCAGCTC 57 161950723 161953840 CCAGTGATGCTTAATACATCAG 57 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 1 2 2 129 9 92511320 92511338 TATTTCTCCCTCATGCCCG 59 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Nr2e1 ENSRNOG00000050550 ENSRNOT00000075151 2 1 1 80 20 47292448 47292472 GAGAACTGTTTGTTCTAGGAATAGC 60 47292004 47292412 TATTCATGCCAGATACAGCCA 59 NA Rattus norvegicus 81 Frmd8 ENSRNOG00000020881 ENSRNOT00000028331 2 1 1 90 1 221228108 221228344 GACATAGCCATGGATGAGC 58 221227888 221227906 AGACCTCCTCATCATGGAC 58 NA Rattus norvegicus 81 Olr677 ENSRNOG00000051514 ENSRNOT00000087979 1 1 1 60 3 77882954 77882974 GTGTACTTAGCAACAGTTGGA 58 77882914 77882932 CAGGGCTGTAGATGATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc4 ENSRNOG00000042467 ENSRNOT00000010229 1 1 1 80 5 126272404 126272422 CCTGTTCTGTTCCTGTACC 58 126271941 126272362 ATGGTCAATAAACCTGGTGTC 58 NA Rattus norvegicus 81 Foxb1 ENSRNOG00000010547 ENSRNOT00000014014 3 1 1 288 8 75995298 75995317 TATCAGATGGTTCGAGGGTG 59 75994081 75994099 TTAACTGGTTAGGGAGCGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cbr4 ENSRNOG00000024411 ENSRNOT00000032199 2 1 1 80 16 31968652 31970172 CAGCTGGTATTAACAGAGACAG 59 31968593 31968612 CCAAGAGGTTGGTATGAAGC 59 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000087569 2 1 2 118 15 60011061 60014584 TAGGAGTAAGCCCATCTGC 59 60009947 60009965 TTAACGTGACTGCAGTCCA 59 NA Rattus norvegicus 81 Itsn2 ENSRNOG00000046741 ENSRNOT00000074150 2 1 1 80 6 30139615 30139634 GTGGACAGGAAGTATTGGAG 58 30137015 30139574 TTCCCAACATTCTCTTGATCC 58 NA Rattus norvegicus 81 Lgi2 ENSRNOG00000003887 ENSRNOT00000005168 1 1 1 80 14 60768169 60768189 AATTCTAACTCCTTCACGGTG 58 60768230 60770053 GTTCCCTTCAATGAACAGGT 58 NA Rattus norvegicus 81 LOC100910771 ENSRNOG00000047516 ENSRNOT00000007657 2 1 1 80 9 114038291 114039815 GTTGTATAATGTGCTGCACG 58 114039858 114039876 GAACACTGTAGACACCAGC 58 NA Rattus norvegicus 81 Lep ENSRNOG00000045797 ENSRNOT00000071926 3 1 1 70 4 56347131 56347152 CAGGATCAATGACATTTCACAC 58 56348747 56348766 GAATGAAGTCCAAACCGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp334 ENSRNOG00000019099 ENSRNOT00000033873 2 1 1 60 3 162058328 162058346 GTCCTTTGAATGTGGCGAG 59 162058286 162058304 ATGTATCGTGAGGGTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp334 ENSRNOG00000019099 ENSRNOT00000033873 3 1 1 60 3 162059051 162059070 ACAATGAAGGTGAACAGGAG 58 162059010 162059028 TCATTCCGCTTTCGTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol4 ENSRNOG00000014775 ENSRNOT00000041125 2 1 1 80 18 13892220 13892238 CGCGGTTTCTAATGAGCTG 59 13891246 13892179 TCCCATTATCTTTGTGATCGGT 60 NA Rattus norvegicus 81 RGD1561113 ENSRNOG00000022681 ENSRNOT00000034930 1 1 1 67 3 11408502 11410654 GAGTATGCTGCCATCAACTC 59 11408454 11408472 TTCTTCTCCTCCAGGTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716,ENSRNOT00000007887 1 2 2 80 6 72487066 72487087 GATTTCAAATTGATCTACCGGC 58 72487127 72489109 GATAGCCATCTCATTCTCCG 58 NA Rattus norvegicus 81 Rpl3l ENSRNOG00000014641 ENSRNOT00000019660 1 1 1 80 10 14099872 14099890 TCAAGACCATCTTTGCCGA 59 14099930 14100997 CTTTCTTCTTACTCTTGTGCCAG 60 NA Rattus norvegicus 81 Vom2r48 ENSRNOG00000028538 ENSRNOT00000039463 2 1 1 80 4 156326531 156349844 ACAACATTCCACAGATCAGC 59 156349886 156349905 GAAACTGGTAAGGAGACTGG 58 NA Rattus norvegicus 81 Rhoj ENSRNOG00000021919 ENSRNOT00000031979 1 1 1 86 6 98284725 98284743 AGACTTGCCTGCTGATGAG 60 98284793 98347316 TCACGGTAACTGCGTAGTG 60 NA Rattus norvegicus 81 LOC100909940 ENSRNOG00000053249 ENSRNOT00000080395 1 1 1 60 3 73668213 73668233 TCTTCATGTACCTACAACCAC 58 73668173 73668191 ACAGAGGCCATCTTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr5a1 ENSRNOG00000012682 ENSRNOT00000017651 1 1 1 86 3 23000501 23006367 CAGCCTCGATGTGAAATTCC 59 23000434 23000452 AAGGTGTAATCCAGCAGGG 59 NA Rattus norvegicus 81 Galntl6 ENSRNOG00000038976 ENSRNOT00000059580 1 1 1 80 16 35573297 35577074 TCTCCTCAACCAAATTGCAC 59 35577117 35577135 TACCCAAAGTGACTGTGGT 59 NA Rattus norvegicus 81 Tsku ENSRNOG00000027784 ENSRNOT00000034843 1 1 1 75 1 163319704 163328459 CTGTGTCACCATGTTGTGC 60 163319647 163319665 GAAACATGGCCGAGTTGTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC102553866 ENSRNOG00000031003 ENSRNOT00000052100 2 1 1 84 1 198838537 198838555 AGGAAGAGACCGAACTGTG 59 198837967 198838489 TGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 2 2 2 80 8 72743563 72743582 ACATAAGAAGAAACGGCTGG 58 72743621 72744257 GTAGTAATCTTGTAGCAACCTGG 59 NA Rattus norvegicus 81 Npy ENSRNOG00000009768 ENSRNOT00000013145 1 1 1 84 4 79563030 79563048 CAAGAGATCCAGCCCTGAG 60 79563095 79564867 GTCTTCAAGCCTTGTTCTGG 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 1 1 2 187 3 114918712 114920915 GAGGCATTTCTACCAGCCA 60 114921066 114921620 TTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Olr1514 ENSRNOG00000033267 ENSRNOT00000048167 2 1 1 60 10 61045318 61045339 AGTCTTCTACCACAGAGTTCAC 60 61045279 61045297 AAATATTCCTGCTCCCGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9a8 ENSRNOG00000008354 ENSRNOT00000012175 1 1 1 80 3 164192897 164195142 TGGCAAATTGGAAGGAGGA 59 164195184 164195204 CCGACTCAAAGATGATAGGTG 58 NA Rattus norvegicus 81 Tpsg1 ENSRNOG00000018701 ENSRNOT00000025236 1 1 1 82 10 14729226 14729804 TTCTCTGGGTCTGTGAACTC 59 14729849 14729867 ACGGTGGAGAAATGAGGAG 59 NA Rattus norvegicus 81 Tpsg1 ENSRNOG00000018701 ENSRNOT00000025236 2 1 1 83 10 14729226 14729804 TTCTCTGGGTCTGTGAACTC 59 14729849 14729868 TACGGTGGAGAAATGAGGAG 59 NA Rattus norvegicus 81 RGD1359634 ENSRNOG00000011170 ENSRNOT00000014878 3 1 1 88 7 120373636 120373844 TTGACGAACTGGTGAAGGA 59 120373566 120373585 GATTCCTCGGTATTGCTTGC 60 NA Rattus norvegicus 81 Pcbd2 ENSRNOG00000047796 ENSRNOT00000071426 2 1 1 82 17 8931144 8931162 GCTTTATGTCCAGGGTTGC 59 8929897 8931100 GATCTGGACCTTGTTGTACAC 59 NA Rattus norvegicus 81 Klf16 ENSRNOG00000033694 ENSRNOT00000045421 3 1 1 85 7 12007208 12007226 AGTCTTCGCACCTCAAGTC 60 12014497 12014516 GAACTTCTTGTCACAGCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Fam81b ENSRNOG00000026845 ENSRNOT00000036547 3 1 1 81 2 3099311 3121753 TATGTTGACAAAGGTTGCCC 59 3099249 3099267 CCTGGTTATTCAGCCTGTC 58 NA Rattus norvegicus 81 Ttr ENSRNOG00000016275 ENSRNOT00000022113 2 1 1 109 18 15533212 15536157 ATGAATACGCAGAGGTGGT 59 15533121 15533139 GTTACTGACGACAGCAGTG 59 NA Rattus norvegicus 81 Ccl27 ENSRNOG00000039530 ENSRNOT00000060594 1 1 1 80 5 58159553 58160676 GAGAAGCAAGAAGCCTTGC 60 58159491 58159509 TAGTCTGGTTGGGAGTGGT 60 NA Rattus norvegicus 81 Akap10 ENSRNOG00000002899 ENSRNOT00000003871 1 1 1 80 10 48194412 48194430 TTCAAGTAGCAGGACAGCA 59 48193729 48194368 CAGGATCTGCCCAAGTCTC 60 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000029267 ENSRNOT00000050345 2 1 1 60 15 23649624 23649643 TCAGAATCAAGCGATTCCTG 58 23649583 23649603 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 3 2 2 80 9 116094552 116094573 ATAGTACTACCCTATCCAACGG 58 116089432 116094512 CAAGTATTGACACGGAACCA 58 NA Rattus norvegicus 81 Pcdhb21 ENSRNOG00000033479 ENSRNOT00000040016 3 1 1 60 18 30589045 30589064 ACAGACGTGAATGACAATCC 58 30589085 30589105 CTTGGATAGGGCTCATAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snap29 ENSRNOG00000001867 ENSRNOT00000002550 3 1 1 80 11 87839400 87839420 TCAAATCCAAACCAGTAGAGC 58 87834891 87839359 TGGCTTCTTTCAATCTGCTG 59 NA Rattus norvegicus 81 Dtna ENSRNOG00000016671 ENSRNOT00000045224 1 1 1 80 18 14616698 14624736 TCACCAGGAGGATACATTACAG 59 14624774 14624795 TGTTGACATACAACCCAATGAG 59 NA Rattus norvegicus 81 LOC100359715 ENSRNOG00000030301 ENSRNOT00000042653 2 1 1 60 18 39957097 39957117 ATGAGGCTTGGAGATACATGG 60 39957057 39957077 ACTATTACGCTCATGGAAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scyl1 ENSRNOG00000023668 ENSRNOT00000032387 3 1 1 80 1 221117973 221117991 AGACCATTCGAAGCTTCCT 59 221117668 221117931 GGACGTCCTTCTCTATTTCTG 58 NA Rattus norvegicus 81 Sec22b ENSRNOG00000018673 ENSRNOT00000025327 2 1 1 80 2 200090004 200090023 AGATGTGCAGAGGATCATGG 60 200090066 200096065 GCCTTCGAATCCAATGCTG 60 NA Rattus norvegicus 81 Tnfrsf14 ENSRNOG00000013820 ENSRNOT00000018494 1 1 1 80 5 172333127 172334284 TCTGTGATCCAGACATGGG 59 172333065 172333083 AACCTGAGATGCATCTGCA 59 NA Rattus norvegicus 81 Rpl39l ENSRNOG00000032300 ENSRNOT00000051564 1 1 1 75 10 5533466 5533484 CCACTGGCTTAGACTCACC 60 5529908 5529926 AAGGTCTTGTGAGAAGCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fzd5 ENSRNOG00000014678 ENSRNOT00000019698 1 1 1 60 9 71444616 71444635 AGCCACATTCACTATGAGAC 57 71444575 71444595 AGACTAAGAGGAAGACGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrl ENSRNOG00000018528 ENSRNOT00000024991 3 1 1 61 15 34198631 34198649 GAGTCCTGATGAGGCTGTG 60 34198588 34198606 GAGGCCCTTCTACAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258,ENSRNOT00000081599 3 2 2 80 7 59955255 59955276 CCATCTGTTCTGGAAGTTAGAG 58 59946356 59955216 TAACTTCAATTCCCTCTGAGC 58 NA Rattus norvegicus 81 AABR07032582.1 ENSRNOG00000048409 ENSRNOT00000072205 1 1 1 80 18 72649754 72649808 TGACGTCATAAAGCGACGA 60 72649692 72649712 CTCTGGCATGTTTCATAGCTC 59 NA Rattus norvegicus 81 AABR07032582.1 ENSRNOG00000048409 ENSRNOT00000072205 3 1 1 80 18 72649753 72649807 GACGTCATAAAGCGACGAC 59 72649691 72649710 CCTCTGGCATGTTTCATAGC 59 NA Rattus norvegicus 81 Scgb2b2 ENSRNOG00000023367 ENSRNOT00000030687 1 1 1 81 1 89724362 89725019 AAGTGAGAAAGCATGCTTTCC 60 89725062 89725080 AAGTTCATGCTGCAACCAC 59 NA Rattus norvegicus 81 Eif5 ENSRNOG00000010218 ENSRNOT00000013695 1 1 1 80 6 136006751 136006769 TATCCACCAGTGAGACACC 58 136006810 136007101 CATCATCTTCCTCTTCTTCCAC 59 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635,ENSRNOT00000022665 3 3 3 80 18 12030830 12030849 GAAGACAACGTTCACCTTGG 60 12030887 12032902 CAAGAATGGAACCAATCCTAAGAC 60 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 2 3 3 80 6 34056244 34056351 TGGAGCCATTTCTTATCAAGTG 59 34056392 34056410 ACCAGACAACTGAGAACGA 59 NA Rattus norvegicus 81 LOC685186 ENSRNOG00000030963 ENSRNOT00000041328 1 1 1 60 5 115649269 115649290 ATGTTCCAGTATGACTCTACCC 59 115649311 115649329 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000089443,ENSRNOT00000009444,ENSRNOT00000089238 1 3 3 60 6 135088691 135088709 TCATGGACTTTGCTGAAGG 58 135024798 135024818 TCTGAGTCTCCATCATAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam132b ENSRNOG00000024688 ENSRNOT00000051810 3 1 1 96 9 98510130 98511068 GTCCTCTATCTACAGACAGGAC 59 98511125 98511143 TAGCACTGAAGTGAGAGCC 59 NA Rattus norvegicus 81 Sdf4 ENSRNOG00000019981 ENSRNOT00000027215 2 1 1 80 5 173435578 173435596 AAGGCCACAATGAAAGGGA 60 173435640 173443071 GGACTTCCTGTGTCTCCTC 59 NA Rattus norvegicus 81 Sdf4 ENSRNOG00000019981 ENSRNOT00000027215 3 1 1 80 5 173431231 173431249 GGATGGGTTTGATGAGGAC 58 173431292 173434361 GTGTTCACATCTACCTTGGA 57 NA Rattus norvegicus 81 LOC680200 ENSRNOG00000042308 ENSRNOT00000043747 3 1 1 80 1 37811656 37811678 CCTGTTCAGTGGAATCTATACAG 59 37811142 37811619 CTTAGAGAAAGTTAGACCCAGG 58 NA Rattus norvegicus 81 Auts2l ENSRNOG00000034287 ENSRNOT00000044800 1 1 1 80 12 27629400 27629418 GACAGTGAAAGCGCTAGTG 59 27629462 27647012 AGGAGCTGAACTATCGCTG 59 NA Rattus norvegicus 81 Tsen2 ENSRNOG00000060175 ENSRNOT00000081957 1 1 1 80 4 147481816 147481835 CTACCACTACTTCCGAAGCA 59 147481877 147487656 CCTTTCCGATACAGCAACAG 59 NA Rattus norvegicus 81 Lrriq3 ENSRNOG00000009555 ENSRNOT00000012841 1 1 1 80 2 261409445 261411115 GAAACCAGATAAAGACTCTTCCAG 59 261411151 261411172 CATTGTCATGCAGATAGAGGAG 59 NA Rattus norvegicus 81 Olr1061 ENSRNOG00000048023 ENSRNOT00000046955 2 1 1 60 7 9193060 9193078 GCCCTTTCTTCTCTAGCAG 58 9193018 9193038 AGTAGGTAACCAAGAACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r6 ENSRNOG00000050370 ENSRNOT00000073546 3 1 1 81 1 747316 750262 GAAACAGTGGTTCCCTCCT 59 747253 747271 AGTCGGCTGTTTGTTTCTG 59 NA Rattus norvegicus 81 Pkp1 ENSRNOG00000010076 ENSRNOT00000013531 2 1 1 80 13 52715582 52715600 ACTCTGGGCTCATTGACTC 59 52713928 52715539 TCTCCACAGACTTGTCATCG 60 NA Rattus norvegicus 81 AABR07014114.1 ENSRNOG00000040213 ENSRNOT00000043131 1 1 1 80 14 1355064 1355084 GATCCCTCACAGAAGAATCTC 58 1355124 1355501 TTCCCAATCATAGCCTATAGC 57 NA Rattus norvegicus 81 Rnf181 ENSRNOG00000012035 ENSRNOT00000016699 1 1 1 80 4 100224632 100224650 CCCGCAACAATATGTTGCT 59 100223859 100224589 TAAAGAGTGATCTGCTGCCA 59 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 2 2 2 80 6 104280893 104283648 ATCTCAGCTGTCTTGTTTACC 58 104280833 104280855 CGTAGATCTTCTCTTTGATCCAG 59 NA Rattus norvegicus 81 Reg3b ENSRNOG00000006151 ENSRNOT00000008212 3 1 1 82 4 109468557 109468577 CATCCATGGTCAAGAACACTG 59 109468620 109469213 ATTGGGTTCTCCACCAAGAG 60 NA Rattus norvegicus 81 LOC100910109 ENSRNOG00000031244 ENSRNOT00000051207 2 1 1 60 18 4371154 4371172 CCTGGGTCCTAAGTCTGTG 59 4371112 4371131 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga10 ENSRNOG00000027253 ENSRNOT00000026985 1 1 1 60 18 30897332 30897353 ACATATCCATCAACTCAGACAC 58 30897373 30897392 TGCTCATAGTCAAAGGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stc2 ENSRNOG00000020729 ENSRNOT00000028146 3 1 1 80 10 16545005 16545024 GAAATCCAGGGCTTACATGG 59 16545067 16547217 GATGAATGACTTGCCCTGG 59 NA Rattus norvegicus 81 Anxa7 ENSRNOG00000007136 ENSRNOT00000061686 1 1 1 80 15 4278852 4278870 TATTCCATGAAAGGCGCTG 58 4278913 4280881 CTGAACGAGGTCAATCTCAC 58 NA Rattus norvegicus 81 Olr1529 ENSRNOG00000039714 ENSRNOT00000048427 1 1 1 60 11 43153879 43153902 TCTTTGTTCTATGGTACTCTCCTC 60 43153921 43153939 GTTTACCTGACCCAGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcmt1 ENSRNOG00000014330 ENSRNOT00000019623 1 1 1 80 1 1740932 1742565 CCCAGGCATTAATAGACCAG 58 1740871 1740890 CCAACATTTGGTTTCCTCCT 58 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 1 2 2 80 16 39909388 39912128 TGATGATTCCAATGTGCTTCC 59 39914062 39914083 CTTCCCTATCAGGAGTCATCAG 60 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959,ENSRNOT00000076142 2 2 3 94 1 32573328 32573346 GAGAAGATCACGCATACCG 58 32573404 32574298 CATCATACACCTTGCCACG 59 NA InUTR Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000072206,ENSRNOT00000076142 1 2 3 80 1 32574331 32581224 CGTCAGAAAGAGGTGAATGAG 59 32581264 32581284 TATGATACGATGGTCCACCTC 59 NA Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000082338 1 1 2 81 14 64488860 64535083 TGCATACCAAGTAGAAGGAGG 59 64488799 64488817 CTCTCCTCCCTGATGAGTG 59 NA Rattus norvegicus 81 Mbd4 ENSRNOG00000010919 ENSRNOT00000014537 3 1 1 80 4 147747881 147747902 AGAACTTCTTAAGCCTCTTGGT 60 147747428 147747845 GGCTTTGTCAGATATTCATCTGAG 60 NA Rattus norvegicus 81 Ccdc180 ENSRNOG00000010412 ENSRNOT00000013930 2 1 1 80 5 61526759 61536901 CTGCCTTCTGGAATTACGTG 59 61536943 61536962 TAGTTCTCTGTCACAAGCCA 59 NA Rattus norvegicus 81 Olr1372 ENSRNOG00000049118 ENSRNOT00000074440 2 1 1 60 10 12570919 12570937 GCCACCCTTTGTACTACAC 58 12570877 12570895 CCAGACACCATCAAGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000077017 2 1 2 82 10 70424425 70424725 CTGAAGGACAGAGCATTTAAGAC 60 70424365 70424383 GGCTTCCTCTGACTTCCAG 60 NA Rattus norvegicus 81 LOC100363638 ENSRNOG00000029121 ENSRNOT00000045320 3 1 1 86 6 141384165 141384270 CCTTCCTGGTATCCTGTCTG 59 141384098 141384116 GAACAGGTGAGGGAGAGTG 59 NA Rattus norvegicus 81 LOC681458 ENSRNOG00000013279 ENSRNOT00000018090 1 1 1 80 1 263968370 263982366 GTTGCAAGAAGAGATGACTCC 59 263982407 263982426 TTTCCTTTCTGCATGACTCC 58 NA Rattus norvegicus 81 LOC102547344 ENSRNOG00000030156 ENSRNOT00000041707 3 1 1 93 18 19275100 19275118 ACCAATGGCTCAGGATCTC 59 19272293 19272799 ATTATCATTGCAGGATCCTGTC 58 NA Rattus norvegicus 81 Yars2 ENSRNOG00000025252 ENSRNOT00000034902 1 1 1 80 11 88885388 88886818 CTGTAGAAAGGTACCTGAAGC 58 88885328 88885347 GTTCTTTGACATGTAGCTGC 58 NA Rattus norvegicus 81 LOC100911256 ENSRNOG00000049104 ENSRNOT00000052408 1 1 1 80 6 91242399 91242417 CTAATGGCTTCTGAGGTGG 58 91242073 91242357 TTCTTCATCCAGTTTCCTGAG 58 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 2 2 2 80 7 142454963 142457085 GCGGTCTTAAAGTTTATCCCA 58 142457124 142457145 CTGGATTCCTTGTAGAGAAGAG 58 NA Rattus norvegicus 81 Rn60_10_0644.1 ENSRNOG00000022699 ENSRNOT00000036962 3 1 1 60 10 63627794 63627814 AGAGGACATCTACCCATAAGG 58 63627754 63627772 GGTGTATCATTGGTCTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phlda3 ENSRNOG00000009068 ENSRNOT00000011999 1 1 1 110 13 52589583 52589601 GAGTCTTGGAACTGGGACC 60 52589675 52591355 AAGTGGACAGAGAAGCTGG 59 NA InUTR Rattus norvegicus 81 Rn60_10_0698.8 ENSRNOG00000051295 ENSRNOT00000075956 3 1 1 60 10 70086494 70086512 AAGTCCAAGCTTCCCTCTC 59 70086452 70086471 GGTTTGGCTTCTGTATGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr7 ENSRNOG00000004249 ENSRNOT00000005620 3 1 1 135 X 28486977 28487333 TCAAGAAAGATGCCATTGGA 58 28508899 28508919 TCTCTTCAATGTCCACATTGG 58 NA InUTR Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 1 4 8 80 1 226463360 226467001 AGAAGAAAGCCATCAACGAC 59 226467041 226467062 GATAGGAACTCCATTTCTGCTG 59 NA Rattus norvegicus 81 Msx2 ENSRNOG00000018355 ENSRNOT00000024766 1 1 1 266 17 11684015 11684033 CTCATGTCCGACAAGAAGC 59 11687953 11687971 CTTGTGTTTCCTCAGGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Abca7 ENSRNOG00000012939 ENSRNOT00000064886 3 1 1 80 7 12761058 12761078 CCCTCTTCCTCTTCTTCATCC 60 12760849 12761017 TGTTTGGAAAGTGGCATTCG 60 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645,ENSRNOT00000001215 3 2 2 81 12 30206797 30206818 AGAGCAAGTTCCTCATAAATGG 59 30206860 30207091 CCTCTCCCTCGGATATCTG 58 NA Rattus norvegicus 81 Nr2f1 ENSRNOG00000014795 ENSRNOT00000020044 2 1 1 83 2 5570959 5576032 GTTCACGTCAGATGCTTGTG 60 5570895 5570914 TATTCCTCCAGTGCACACTG 60 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 3 2 2 84 6 93549994 93551767 GTGAAACCTGAAGAGGTTACC 59 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834 1 1 2 80 1 264097296 264097315 GCCATCGAACCTATAAAGCA 58 264097358 264098595 ACACATCGTTCTGGAAAGC 59 NA Rattus norvegicus 81 Gtsf1 ENSRNOG00000036831 ENSRNOT00000055275 2 1 1 80 7 145037773 145037792 ACCTTGGACAAGAGACTCTG 59 145037246 145037732 GTTCCCACAAGTCTTTATCCC 59 NA Rattus norvegicus 81 Pln ENSRNOG00000000413 ENSRNOT00000000469 1 1 1 159 20 34633206 34633224 TTGTGACGATCACAGAAGC 58 34640840 34640859 GAGCGAGTAAGGTATTGGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Asl ENSRNOG00000000903 ENSRNOT00000001211 2 1 1 80 12 30170868 30170889 CAAGGCATCTTCAAATTGTACC 58 30170928 30171160 TTCACCAATGAGTTCCTTCAG 58 NA Rattus norvegicus 81 Ociad1 ENSRNOG00000002205 ENSRNOT00000002996 3 1 1 80 14 37473457 37473882 AAGACCAATTCCTGACATAGG 58 37473397 37473415 CACTCTTCATGGCACTCTG 58 NA Rattus norvegicus 81 LOC100360654 ENSRNOG00000045963 ENSRNOT00000047422 2 1 1 60 17 42168342 42168361 ATCACCTTCAGAAGTCGACC 60 42168384 42168402 TACTTTCTCTTGCGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 1 2 2 80 11 81785801 81789548 CGTTTGACAAAGGAGCAGAG 60 81789589 81789609 ATGTCCTGTACTAACCAACCA 59 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653,ENSRNOT00000077386 3 2 2 110 10 16774604 16774622 TCCTCTGTTTGGACCACAG 59 16770299 16774531 TTCTAGCTGTGACCTCAGTG 59 NA InUTR Rattus norvegicus 81 Eif3g ENSRNOG00000020619 ENSRNOT00000027985 3 1 1 80 8 21915078 21915205 GTTACTTCCTGGAGACCCA 58 21915016 21915036 TCTACCTTGTACTCAGTCACC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000083674,ENSRNOT00000090706,ENSRNOT00000077110 3 4 4 80 17 34739960 34739979 ACTAGAAGCAGACGGAACAG 60 34740018 34744819 GTATTACTTGCTCTGTTGAGGAC 59 NA Rattus norvegicus 81 Atf4 ENSRNOG00000017801 ENSRNOT00000065304 3 1 1 68 7 121481720 121481739 TATGGATGGGTTGGTCAGTG 60 121481880 121481898 AACATCCAATCTGTCCCGG 60 NA DesignNoJunction Rattus norvegicus 81 Samd8 ENSRNOG00000013236 ENSRNOT00000018023 2 1 1 80 15 2698426 2701461 ACAAGCACAGGTCAATCCT 59 2698364 2698383 CAAACATGGTAAAGCAGCGA 60 NA Rattus norvegicus 81 LOC100912849 ENSRNOG00000015386 ENSRNOT00000020640 2 1 1 80 9 15585882 15585901 CTTGTTCAGCTTCAAGAGCC 60 15585944 15603768 TCTGTGACTCCTGGAAAGC 59 NA Rattus norvegicus 81 Tprg1 ENSRNOG00000001923 ENSRNOT00000002634 2 1 1 80 11 78822608 78822628 AGACTTGAAAGGTCACATAGC 58 78795004 78822568 TTCCAGTGATCAATCTCTGTC 58 NA Rattus norvegicus 81 Lman2 ENSRNOG00000016161 ENSRNOT00000021638 3 1 1 99 17 9811663 9811682 GGAAGAACTGCATCGATGTC 59 9811744 9814211 ATGAGGTCGTGGTTGTCAG 60 NA Rattus norvegicus 81 Dlgap3 ENSRNOG00000014302 ENSRNOT00000019214 1 1 1 80 5 145302985 145303004 GATGTGACCCTCAAGTTCCT 60 145303045 145303679 CTTCTTCTCCTCCTTAGGCTC 59 NA Rattus norvegicus 81 Bysl ENSRNOG00000049121 ENSRNOT00000075630 2 1 1 80 9 15401730 15401748 AAACGACTCAACTTCCACC 58 15401790 15401973 GATCAGGATTCCTTTGAACCA 58 NA Rattus norvegicus 81 Olr1075 ENSRNOG00000039449 ENSRNOT00000060456 3 1 1 60 7 13404110 13404130 ATCTCACCTCTCAGTAGTCTC 58 13404070 13404088 AGAACTGAGGTACACTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684936 ENSRNOG00000033559 ENSRNOT00000041273 2 1 1 60 10 36502144 36502164 AGATGCCAACAAGAACAAAGG 60 36502104 36502124 TTCCAAATACTCCATCAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903 1 1 2 85 6 26836277 26836424 CTAGTCAGGATGATCACGGA 58 26836472 26836490 TGATAGAGGACCACAAGCA 58 NA InUTR Rattus norvegicus 81 Fam114a2 ENSRNOG00000002423 ENSRNOT00000058619 3 1 1 81 10 42913766 42913786 GCATGTGTTTGGGATAAAGTC 58 42910540 42911010 CCAGGCTATCCTCTAGATGG 59 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000079185,ENSRNOT00000007259 2 2 2 80 6 42856137 42856155 GGTGTACTGACCCTGAGAC 59 42856198 42856388 TGAAACCAACTTCTGTTCCC 58 NA Rattus norvegicus 81 Vtcn1 ENSRNOG00000015279 ENSRNOT00000020566 3 1 1 83 2 203261044 203261067 CACCTACACATGTTATATCCACAC 59 203261109 203265477 TCTGGCATACTGAAGGCTC 59 NA Rattus norvegicus 81 Stx8 ENSRNOG00000003849 ENSRNOT00000005204 3 1 1 80 10 54659820 54659839 AACACAGATGAGAAGCTTCG 58 54659880 54753139 CATTATCATCCCACAGGAAGC 59 NA Rattus norvegicus 81 Tifab ENSRNOG00000011947 ENSRNOT00000015878 1 1 1 80 17 9237885 9237903 CTGTTCCTGTAAAGCAGGG 58 9237944 9238211 TCCATAGATCCAGCTTATAGGG 59 NA InUTR Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978,ENSRNOT00000086117 1 2 2 87 11 87375337 87375358 CGTGAGAAATAAGAAGGTTGTG 58 87375406 87375512 GGTCTTAGGGCTACTTCCT 58 NA Rattus norvegicus 81 Tmem39b ENSRNOG00000023746 ENSRNOT00000032558 3 1 1 109 5 147906862 147906881 TCTTCTGTCAGCTCATAGCC 59 147906175 147906790 CAGGTGGAAGTTCAGGGAG 60 NA Rattus norvegicus 81 Oxt ENSRNOG00000021225 ENSRNOT00000028829 2 1 1 131 3 123106838 123107080 GATATGCGCAAGTGTCTTCC 60 123107174 123107192 GTAGTTCTCCTCCTGGCAG 59 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452,ENSRNOT00000055318 2 2 2 80 2 252794872 252794892 GACTCCTTCAAGTACGAAAGC 59 252794928 252795926 GAGGATAAATTCTCCTGTAATTCCC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 1 2 2 80 7 130124241 130124452 GGAAATGACTACATCGACCA 57 130124180 130124199 GGATATCTTTGCCAGAACCT 57 NA Rattus norvegicus 81 Cc2d1b ENSRNOG00000008634 ENSRNOT00000011670 1 1 1 80 5 128223481 128223907 AAGATGAGGAGAGGGACAC 58 128223951 128223969 GAAGATGGGATGAAGGGAC 57 NA Rattus norvegicus 81 AC126957.1 ENSRNOG00000042397 ENSRNOT00000064835 2 1 1 80 1 230704200 230704224 CCCTCTCCTTCTGTAATAACC 57 230704266 230704284 CTGTGTTACTACAGGCCAG 58 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 3 2 2 82 7 144058464 144058482 CAGTTCCTTGAGGATGGCT 59 144058528 144058662 GTTTGTACTGGCCATCCTG 59 NA Rattus norvegicus 81 AABR07062219.1 ENSRNOG00000057069 ENSRNOT00000088908 1 1 1 80 4 165356830 165356850 CATGGATGTAAACGGATCTGC 60 165353389 165356791 CTGAAGGAACTTCCTTTCATCC 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968,ENSRNOT00000048752 2 2 2 80 18 27406110 27406396 ATCATTGAGGACAAGGTGGA 59 27406049 27406069 TTCTTCACAGAACGACAATGC 60 NA Rattus norvegicus 81 Ccdc62 ENSRNOG00000038002 ENSRNOT00000057814 2 1 1 81 12 38086523 38089376 AAGTTAGAAGGTGAGCTGCA 59 38086461 38086479 TCTGATTGGACTCAAGCGT 59 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 2 2 2 96 9 16610694 16611160 ATGGACCCAGAACATGTGG 60 16610616 16610635 CATCTGATATCTCCCGAGCC 60 NA Rattus norvegicus 81 AABR07034730.2 ENSRNOG00000050898 ENSRNOT00000036565 1 1 1 80 11 85532562 85532703 CACTTAACAGGGTCATGTGC 59 85532746 85532764 CAGTTTGACTGTGCTTCCG 60 NA Rattus norvegicus 81 Tssc4 ENSRNOG00000032677 ENSRNOT00000046669 2 1 1 228 1 216254998 216255017 GGTTATTGAAGCGTGTACGG 59 216255456 216255475 ATAAGACCTGACATCCGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 1 1 1 61 1 97714766 97714784 CTATGCTGACAGTGCTGAC 58 97714809 97716737 CACTGGACAGGAGAGTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Cpsf6 ENSRNOG00000005927 ENSRNOT00000008193 3 1 1 80 7 60397754 60400539 TGGATCAAGACGTGAACGA 59 60397692 60397713 CTACTCCGAGATTTATGACGTC 58 NA Rattus norvegicus 81 Bmpr1b ENSRNOG00000016289 ENSRNOT00000021963 3 1 1 80 2 247411470 247411489 GCTGACATGTACAGCTTTGG 60 247406292 247411432 CTGGTATTCTTCCACTATACCTCC 60 NA Rattus norvegicus 81 Ogfod2 ENSRNOG00000001081 ENSRNOT00000001433 3 1 1 121 12 37909548 37909936 ACTCTTGGAGGAGCTTGAG 59 37909445 37909463 GTGAGCTGTAGACCTCAGG 59 NA Rattus norvegicus 81 Arv1 ENSRNOG00000018909 ENSRNOT00000025695 2 1 1 92 19 57484852 57484870 GTTGTATCGAGTGCAACCG 59 57484926 57487394 GTTTCTGGCAGGATTTGCA 59 NA Rattus norvegicus 81 Zfp180 ENSRNOG00000029336 ENSRNOT00000026077 1 1 1 81 1 80923852 80929169 GTGTGGAGAACTTTGTTCTACC 59 80929211 80929229 TGAGGCAAGATGTCCAGTG 60 NA Rattus norvegicus 81 Tial1 ENSRNOG00000020271 ENSRNOT00000027463 2 1 1 80 1 199847491 199847512 ATGTAGTAAACCAGTCAAGTCC 58 199847322 199847452 TCATAAGTTGATCTGTCAGCC 58 NA Rattus norvegicus 81 LOC690468 ENSRNOG00000030747 ENSRNOT00000042661 2 1 1 60 2 199479148 199479166 TAAAGTTCAAGGTCCGCTG 58 199479106 199479127 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690468 ENSRNOG00000030747 ENSRNOT00000042661 3 1 1 60 2 199479148 199479167 GTAAAGTTCAAGGTCCGCTG 59 199479107 199479127 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp788 ENSRNOG00000014380 ENSRNOT00000019278 3 1 1 85 1 98228618 98229159 GAGGAGAAGTCAGAGAATGTG 58 98229203 98229224 GTGTCTTGGTAAAGATTTCTCC 57 NA Rattus norvegicus 81 Tmem132c ENSRNOG00000000963 ENSRNOT00000048474 3 1 1 80 12 32817582 32817600 TCAGAGAACAACAAGGCCA 59 32809196 32817542 GCTGATTATAGCTTCCTGTTTGG 60 NA Rattus norvegicus 81 Armc10 ENSRNOG00000012785 ENSRNOT00000044020 3 1 1 82 4 10013477 10016164 CTAACCAAGCCATCATTCGTG 60 10013415 10013439 CTCTTTAATACTTTGGTTCAGGGAG 60 NA Rattus norvegicus 81 Rasa1 ENSRNOG00000029185 ENSRNOT00000046251 3 1 1 80 2 13618119 13619490 GATGAACTTGGGAATGTACCTG 59 13618060 13618079 CAATGCTGCTAAGTCACGAG 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 2 2 3 80 13 56234225 56235258 GGGCAAGCAAGATATCTTCTG 59 56235300 56235318 CCTGTGCATCAACAGAGTC 59 NA Rattus norvegicus 81 Il11ra1 ENSRNOG00000015068 ENSRNOT00000020885 2 1 1 80 5 58155048 58155067 CAATGTGACTGAGGTGAACC 59 58155109 58155667 GGATCAGGACGTAAGATCCT 58 NA Rattus norvegicus 81 Shisa6 ENSRNOG00000029012 ENSRNOT00000057509 2 1 1 82 10 53015252 53037186 ATGAACATCCACAGGGCTC 60 53015188 53015210 GAGATGGTTTCTCTTTCACAGTG 60 NA Rattus norvegicus 81 Rabl2a ENSRNOG00000013947 ENSRNOT00000044262 1 1 1 80 7 130557146 130557164 GCTATTCGGTTAGCTGTGG 58 130556924 130557103 CTTGAAGTTCTCAAGCTCCT 58 NA Rattus norvegicus 81 Dgcr14 ENSRNOG00000000283 ENSRNOT00000000308 2 1 1 82 11 87229264 87229881 CTGCTCCTGGTATGAATGAG 58 87229925 87229944 GCTCTCAGATCCTTCAACTC 58 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 2 2 2 107 19 10130852 10130870 TACTGCCTCAACCAGAACC 59 10129858 10130575 GTTGATGCGACTGTAGTGG 59 NA Rattus norvegicus 81 Foxo4 ENSRNOG00000033316 ENSRNOT00000048521 1 1 1 83 X 71156272 71156291 ATATACGAATGGATGGTCCG 57 71156336 71159323 GATGGAGTTCTTCCATCCTG 58 NA Rattus norvegicus 81 Cdc25c ENSRNOG00000024008 ENSRNOT00000037368 3 1 1 80 18 27540260 27540279 AGCTAGAAGACCAAGAAGGG 59 27536344 27540217 TCAGACTTAAGCCCTTGGC 60 NA Rattus norvegicus 81 Scrn1 ENSRNOG00000009636 ENSRNOT00000013088 3 1 1 80 4 84706749 84706768 AATGAAGCCATCAATGCCAG 59 84698497 84706707 TTCTAAACCAAGCCTGACCA 59 NA Rattus norvegicus 81 Cntf ENSRNOG00000012460 ENSRNOT00000016690 1 1 1 75 1 229600849 229600867 ACCTGACTGCTCTTATGGA 58 229599862 229599880 CCATCCACTGAGTCAAGGT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07031533.1 ENSRNOG00000049802 ENSRNOT00000072093 3 1 1 60 18 18079353 18079371 AACCTGGATGAGAAGGACC 59 18079311 18079330 TAAGCTCGTAGATCTTGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hes2 ENSRNOG00000010490 ENSRNOT00000014035 1 1 1 81 5 169338706 169338726 GACATCCTGGAAATGACTGTG 59 169338769 169338867 TATCCAAAGACCCAGGTGC 59 NA Rattus norvegicus 81 Hes3 ENSRNOG00000010893 ENSRNOT00000014536 1 1 1 80 5 169466218 169466236 CTGGAGAAGGCCGATATCC 59 169465785 169466175 TACTAGCCAAAGTCCTTGCA 59 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281,ENSRNOT00000015935 2 2 2 80 6 136351796 136351815 AGATCTACCAGACGAAGCTC 59 136351855 136351960 GTTTCAGATAACAGGAAGCCAG 59 NA Rattus norvegicus 81 Tsga13 ENSRNOG00000011108 ENSRNOT00000015134 3 1 1 80 4 58213698 58213718 AGAAAGTGGAGGATCAAAGAC 58 58208154 58213657 GCAGTCGTGTCATACATCTC 59 NA Rattus norvegicus 81 Pcdh7 ENSRNOG00000012367 ENSRNOT00000049245 2 1 1 81 14 55078412 55078433 TTCAATTGGATCAGATCACTGC 59 55072600 55078372 GTATGGATGTACACGCATCTG 59 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151,ENSRNOT00000080340 3 2 2 85 5 147131571 147131592 CCTTGATGAAGGTGTTTATGGG 59 147123388 147131526 CAGATGGTTTCTTCTGCAGG 59 NA Rattus norvegicus 81 AABR07025051.1 ENSRNOG00000042099 ENSRNOT00000065453 3 1 1 94 16 26593403 26593424 GCAGAGGCCTACTGTATCTG 60 26593477 26593499 CAGAACACAATGATGTAGGAAGG 60 NA Rattus norvegicus 81 Krtap11-1 ENSRNOG00000027478 ENSRNOT00000029345 3 1 1 60 11 29710368 29710387 GGAGGCATTTCTACTGTCTG 58 29710327 29710345 AGGATTGCTGGTATGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4a1 ENSRNOG00000042139 ENSRNOT00000029072 2 1 1 80 4 155951075 155954097 GTCCGTGGAAGACAAAGTC 59 155951013 155951031 TCCCTGGAAGTGAAGTAGC 59 NA Rattus norvegicus 81 AABR07062206.1 ENSRNOG00000051489 ENSRNOT00000071421 2 1 1 80 4 165024551 165024571 AGTCTTCAGGCTTACAGAACC 60 165022990 165024510 GGACTGAACACTTTCTGTGG 59 NA Rattus norvegicus 81 AABR07062206.1 ENSRNOG00000051489 ENSRNOT00000071421 3 1 1 80 4 165022993 165024512 GGCCACAGAAAGTGTTCAG 59 165022931 165022950 AAGAGTTACCAGCAGATGGG 60 NA Rattus norvegicus 81 Sumo3 ENSRNOG00000038489 ENSRNOT00000001637 3 1 1 84 20 11729714 11729733 TTGTCAATGAGGCAGATTCG 59 11727752 11729667 CATCCTCCATCTCCAGCTG 60 NA Rattus norvegicus 81 Kif14 ENSRNOG00000037211 ENSRNOT00000012038 2 1 1 80 13 53401131 53406199 TCTCTAGAAGGAGGAGCAG 57 53406240 53406261 TACTCTGAATCGGATGAATGTC 58 NA Rattus norvegicus 81 Mertk ENSRNOG00000017319 ENSRNOT00000023419 3 1 1 80 3 121294051 121299917 ACTACAGAAGGAGCTCCAG 58 121299960 121299979 TCTGATTTCCAGGTTGTTGC 59 NA Rattus norvegicus 81 Dusp16 ENSRNOG00000006628 ENSRNOT00000009151 1 1 1 80 4 168480574 168499193 TCAACAAGGAGCTGATGCA 60 168480512 168480532 GTATGAAGTCAGGCTTTGGAC 59 NA Rattus norvegicus 81 Rrm1 ENSRNOG00000045752 ENSRNOT00000074058 2 1 1 80 1 167554269 167554476 ATCCTATTCCAGAGGCACAC 59 167554518 167554537 TGAAAGCATCTGCTAGACCT 59 NA Rattus norvegicus 81 Rrm1 ENSRNOG00000045752 ENSRNOT00000074058 3 1 1 80 1 167554270 167554476 TCCTATTCCAGAGGCACAC 59 167554518 167554538 ATGAAAGCATCTGCTAGACCT 59 NA Rattus norvegicus 81 Evi5 ENSRNOG00000002039 ENSRNOT00000061630 3 1 1 80 14 3011603 3011623 TAACAGGTCTGACTCTAAGCA 58 3011665 3034582 TTTAGGCATCTGAGCTCGT 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742,ENSRNOT00000033017 3 2 2 80 17 1770046 1770066 TCTCTACAGCAGACCAAAGAG 59 1769384 1770009 GCATAGAAGTTCTCATACTCTAGC 59 NA Rattus norvegicus 81 Mt2A ENSRNOG00000043098 ENSRNOT00000067391 3 1 1 101 19 11308717 11308736 CGCTCCTAGAACTCTACAGC 60 11308372 11308653 CAGGAGCAGGATCCATCTG 60 NA InUTR Rattus norvegicus 81 Olr1452 ENSRNOG00000033492 ENSRNOT00000043989 1 1 1 60 10 44714236 44714256 GGCTTCATTCTCTTAGGACTC 58 44714278 44714296 CCAGCACAAAGAGGAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1452 ENSRNOG00000033492 ENSRNOT00000043989 2 1 1 60 10 44714414 44714432 ACATGATGCTGGTCTCCAC 60 44714453 44714474 TTCTTGCCCGTTAAATAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng7 ENSRNOG00000056257 ENSRNOT00000089944 1 1 1 83 1 64399688 64400052 TATTCTGAAGACAGTACGCAC 58 64399625 64399643 ATGTTGCTGATGACGAAGG 58 NA Rattus norvegicus 81 Cnpy3 ENSRNOG00000016315 ENSRNOT00000021868 3 1 1 80 9 16556467 16556485 AAGGTGGTGATGGACATCC 59 16556527 16556916 CACATCACACTGCTTCTTGAG 60 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 2 3 7 93 20 4095963 4095981 AGAAGATGAGTGGAGTCGG 59 4096038 4096452 CCAGACTGTCCTTTCTGGT 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000090791,ENSRNOT00000080590,ENSRNOT00000060327 1 4 7 73 20 4087729 4087747 GTTGCTAACAGTGCTGAGC 60 4091614 4091632 GTATCTGACCAGAAGCCGT 59 NA DesignNoJunction Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 1 2 2 80 4 9676047 9678433 CAGTTCAAGCTAAACATCGGG 60 9678473 9678493 GCCAGCATCATGTGAATACTG 60 NA Rattus norvegicus 81 LOC499240 ENSRNOG00000013713 ENSRNOT00000055158 3 1 1 229 1 174344704 174344724 TTTCCAGAGGATGTCATTCAG 58 174339417 174343032 TTTAACTTCCTGACCCTGTC 57 NA DesignRelaxed Rattus norvegicus 81 Hs3st6 ENSRNOG00000014672 ENSRNOT00000052008 2 1 1 82 10 14123349 14123367 TCGACAGGTGCTATGATCG 59 14128288 14128306 CTTCTCCATGGTGATCTGC 58 NA DesignNoJunction Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 3 2 2 80 9 16651345 16651364 GAGGAAGAGAAGAAGCACCT 59 16651407 16652535 CTCCTTCTCCTCCATGCTG 60 NA Rattus norvegicus 81 Des ENSRNOG00000019810 ENSRNOT00000026860 3 1 1 80 9 82558931 82558949 CGTGCTCAGTATGAGACCA 59 82558991 82559178 AGTCAAGTCTGAAACCTTGGA 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311,ENSRNOT00000089310 1 2 2 80 17 15772422 15772442 TCTCTTCTATCTACCGCTTCC 59 15772484 15774792 GCTTTGTATCCCACTCCTC 58 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 1 2 2 80 20 33155229 33156674 ACATGTTGGAATCACAGGAG 58 33155168 33155187 TCACAGCTATCTGAATCACG 58 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 3 2 2 80 5 131933736 131935458 AGGTCACAGCTATAAACTTACG 58 131935496 131935517 CAGAGTGACATTCCACTATCAC 59 NA Rattus norvegicus 81 Thap11 ENSRNOG00000019109 ENSRNOT00000025815 1 1 1 60 19 37826651 37826669 CCGTGAAGAACTTCGAGAG 58 37826692 37826711 GTGCTTCTTACGGATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 1 2 2 88 10 53575898 53575917 CTGAATGAGGAAGAAGGCAG 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 2 2 2 80 1 18903798 18903817 CCACGACTTGTGATTCAGAG 59 18903859 18905740 CTTCCACGTTCACCTTACAG 59 NA Rattus norvegicus 81 LOC100363294 ENSRNOG00000052628 ENSRNOT00000088432 3 1 1 83 18 27555779 27555798 TGATCTCCTGGATAACTGGC 59 27555844 27557478 AAGTATGCAAACTGGGCCT 60 NA Rattus norvegicus 81 Xpa ENSRNOG00000009576 ENSRNOT00000064685 2 1 1 80 5 61777062 61777080 TGTGGGAAAGAGTTCATGG 57 61775922 61777018 ATCATCAGCATCTCTGCAG 57 NA Rattus norvegicus 81 Spata6 ENSRNOG00000007568 ENSRNOT00000010524 3 1 1 80 5 131781401 131781419 TCAGCACCTTCAACAACTC 58 131781460 131787661 ATCAGAATGGAATCTTTCCCTG 58 NA Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 3 2 2 81 18 38329673 38329691 CTGTCTCAGTTCTTCGCCT 59 38321401 38329629 TCATTTGGGTTGTCATCTGC 59 NA Rattus norvegicus 81 Crb1 ENSRNOG00000010903 ENSRNOT00000032122 1 1 1 80 13 56317218 56317236 AGTTCAGTGGTGTCAGCTC 60 56314151 56317175 TTGGCGATACATTCAAACCC 59 NA Rattus norvegicus 81 Slc25a29 ENSRNOG00000004351 ENSRNOT00000005753 2 1 1 80 6 132738581 132738879 CATCAAGCAAGAAAGTGTGC 58 132738520 132738538 ACCAGTGCATTGATGAAGG 58 NA Rattus norvegicus 81 Bzw2 ENSRNOG00000005096 ENSRNOT00000007414 1 1 1 80 6 55606883 55610592 TAGTCAAAGAAGGCATCGCA 60 55606822 55606843 TGACAGAATTGGCATCTTTCTC 59 NA Rattus norvegicus 81 Akt2 ENSRNOG00000018677 ENSRNOT00000025303 1 1 1 80 1 84441197 84441575 GCCAAAGTGACCATGAACG 60 84441615 84441637 CTCTCGAACTAGAATGACTTTGC 60 NA Rattus norvegicus 81 Barx1 ENSRNOG00000016915 ENSRNOT00000022830 1 1 1 85 17 14826004 14826022 TATTCACTGAGCTGCAGCT 59 14825834 14825958 AGCTAGATCTATTCTGTCTGGG 59 NA Rattus norvegicus 81 Prg3 ENSRNOG00000037908 ENSRNOT00000057616 2 1 1 80 3 72397089 72398719 TAAGGCTCAGAAACTCTGCA 59 72398760 72398780 TGAACTTGGAAGTTGAAACCG 59 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491,ENSRNOT00000078392 1 2 2 80 X 15043049 15043165 ATGTGGAACATGTCCTCAG 57 15043209 15043227 AACAGTCTGGAAGACAACG 58 NA Rattus norvegicus 81 Rgs1 ENSRNOG00000003895 ENSRNOT00000005251 2 1 1 90 13 61070015 61070033 TGGAATGGACATGAAAGCA 57 61069435 61069962 AGCCGAAAGTATGTCTTTGG 58 NA Rattus norvegicus 81 Ubp1 ENSRNOG00000009729 ENSRNOT00000013050 1 1 1 80 8 122216367 122216385 ATGAAATTCGGATGCTGGA 57 122216427 122220474 CTCTTATGATGCTCTTCACCA 58 NA Rattus norvegicus 81 RGD1561517 ENSRNOG00000016583 ENSRNOT00000022265 2 1 1 113 3 150052559 150052577 CACAAGAGGACCAAAGCAC 59 150052653 150052945 CTTCACACTTGGCTTCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rbm33 ENSRNOG00000006718 ENSRNOT00000033377 3 1 1 80 4 606554 606572 CAGTTTGACAAGCCTGGTG 59 606613 611552 GTCATCTTCAAGTTCACTGTCC 59 NA Rattus norvegicus 81 Lrtm2 ENSRNOG00000007508 ENSRNOT00000010238 3 1 1 86 4 151381694 151384232 GACAGCTCTCCTGGATCAC 60 151381626 151381645 GACTGTCACATGTGCAAGAG 59 NA Rattus norvegicus 81 Shisa3 ENSRNOG00000025670 ENSRNOT00000036103 1 1 1 209 14 42220575 42220593 ATCACGAAGGGTTCCAGTG 60 42218006 42218024 CAATGAAGATGGAGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 3 2 2 80 1 277658580 277658598 AATATGGTGCCTGAAGACG 58 277658642 277659093 GTTCCAGGTCTGATCAACC 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 3 2 2 91 9 16975247 16975265 CTGTGTTAGCACAGCAGAG 59 16965478 16975192 CAGTCAGGTCATCCCTGTC 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 2 4 4 80 4 165310580 165310601 GGGATGAATGTAAACAGACCTG 59 165307518 165310539 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000012020 ENSRNOT00000016714 1 1 1 80 5 134370093 134370112 GGAACCACATTCGAGTTACC 59 134365987 134370056 CTACTAACACCTTATCATAGGTGTC 59 NA Rattus norvegicus 81 Ptgs2 ENSRNOG00000002525 ENSRNOT00000003567 1 1 1 80 13 67353088 67353107 CCAACCTCTCCTACTACACC 59 67353148 67353715 CCTTATTTCCTTTCACACCCA 58 NA Rattus norvegicus 81 Tspan13 ENSRNOG00000005046 ENSRNOT00000006752 2 1 1 81 6 55506799 55524203 CTGCTATACACCCTGGTCAG 60 55506737 55506755 CTCGGAGACTGGAGATCAG 59 NA Rattus norvegicus 81 Cyc1 ENSRNOG00000012457 ENSRNOT00000017067 3 1 1 90 7 117411507 117411525 AAGTAGCCAAGGATGTTGC 58 117411577 117411679 ATCAACAACATCTTGAGTCCC 58 NA Rattus norvegicus 81 Pik3c2a ENSRNOG00000020479 ENSRNOT00000055120 3 1 1 80 1 185234482 185234503 ACAAGAAGCCAGTCTTTAATCG 59 185234543 185252593 CCCATTTGGGTCTTTCTGAG 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 1 1 1 61 10 14051943 14052736 TTGCCACAGATCAGCTAGG 60 14051900 14051919 TCAGTTCCCTAGGGAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Hcrt ENSRNOG00000018892 ENSRNOT00000025547 3 1 1 144 10 88669655 88670332 TCTACAAAGGTTCCCTGGG 59 88669529 88669547 GCAACAGTTCGTAGAGACG 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 1 2 2 80 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423816 28423941 TTACCGTAGATCTCCTCTTCTG 59 NA Rattus norvegicus 81 Lztr1 ENSRNOG00000001870 ENSRNOT00000002554 2 1 1 80 11 87395093 87395113 ATTGTAGAGATTGTTCGTCGG 58 87395154 87395832 CAAAGATGTGCCAATGTCCA 59 NA Rattus norvegicus 81 Mrps18a ENSRNOG00000019511 ENSRNOT00000026499 2 1 1 80 9 17241466 17241486 GTCTGTTCCCAAATCACAGAC 59 17238718 17241425 GAGTCAGATAGCGATTGAGC 58 NA Rattus norvegicus 81 Suv39h1l1 ENSRNOG00000039576 ENSRNOT00000008399 1 1 1 89 X 15182386 15182404 TTTGACCTGGACTACGTGG 59 15182455 15182560 GGGATCACAACTATGGTTGAC 59 NA Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 2 2 2 80 6 133578596 133578615 AATGGACTCTGTGAAGAACC 58 133578657 133581250 AGCCCGAATATCTATTTCGC 58 NA Rattus norvegicus 81 Golga1 ENSRNOG00000014493 ENSRNOT00000019703 1 1 1 80 3 23311720 23312243 GACTCTGGAATATAAGATGTCTTGG 59 23311664 23311683 CGAGGGTTGGAGATAGATGG 60 NA Rattus norvegicus 81 Cyp4b1 ENSRNOG00000055078 ENSRNOT00000013321 1 1 1 80 5 134514945 134514964 CATTTACTGGCTCACTCCAC 59 134514752 134514904 CTGATGACCTCATCTGTATGG 58 NA Rattus norvegicus 81 Fam180a ENSRNOG00000011750 ENSRNOT00000015752 1 1 1 81 4 62847662 62847680 AAAGAGGTCCTTGTCCCTG 59 62846214 62847618 TAGCAAGAGCTCATACAGCA 59 NA Rattus norvegicus 81 Fam71b ENSRNOG00000021425 ENSRNOT00000031580 2 1 1 80 10 31509165 31509183 CAGTTGCATCAGTAACCCA 58 31509226 31510353 CCATGGATTTCTGAGACGAG 58 NA Rattus norvegicus 81 Mir1193 ENSRNOG00000041604 ENSRNOT00000063357 2 1 1 60 6 133864755 133864774 TTTATGCTGTAGGTCACCCG 60 133864797 133864815 TATCATCCCACAGACGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy2c ENSRNOG00000009031 ENSRNOT00000012212 3 1 1 80 4 170683498 170685380 CCTCCAAAGAAAGACCTGTG 59 170683437 170683455 GAAGCTGTACACGTCTCCT 59 NA Rattus norvegicus 81 Nsun7 ENSRNOG00000025494 ENSRNOT00000039835 1 1 1 81 14 43559136 43559156 ACAGTTAGGAAACAGGAACAG 58 43558741 43559096 CTTCTTCAAGGCTTACTTTACC 57 NA Rattus norvegicus 81 Aaas ENSRNOG00000013445 ENSRNOT00000018809 3 1 1 80 7 143950178 143950196 TGAGCACAATAACGAGCTG 58 143949721 143950134 GGAAGATTGATCCACTGGC 58 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 3 2 2 80 3 123783604 123783623 GGCTTCCAAGATAAACCAGG 59 123783664 123785606 TTCCTCCGAATTCTCTACTGG 59 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 3 1 1 60 1 91072755 91072774 ACAACATCCTGTACAGACTG 57 91072319 91072733 TATAAACAGTAGGCAGTGCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC364561 ENSRNOG00000020474 ENSRNOT00000027818 2 1 1 86 8 21679188 21679206 TGAATCTCTGGCCTCACAG 59 21679256 21680097 TTCTGCATCTGACCTCTGC 60 NA Rattus norvegicus 81 AABR07065651.2 ENSRNOG00000047641 ENSRNOT00000075175 3 1 1 81 6 138764647 138764666 CCCTATACCTGCAAATGGAC 58 138764542 138764606 TGGTCACTAGTATCTGTGTCTG 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 2 1 1 63 5 135396669 135396689 CTTGAGTAGAAACCAGAATGC 57 135395774 135396647 AGTATCTTTGAAGATGCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dync1li1 ENSRNOG00000010434 ENSRNOT00000014532 1 1 1 80 8 122760424 122760444 ATAGAGGAGTACAAGAAGGGA 57 122760484 122761165 TCTTGTTTGATCATCCCTGTC 58 NA Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000009584 3 1 2 80 5 64789828 64790595 TGGAGTCAAAGGAGGAGTG 59 64790638 64790657 TTCCATAACTGTCCATCACG 58 NA Rattus norvegicus 81 Rn60_8_0909.1 ENSRNOG00000042208 ENSRNOT00000064498 2 1 1 60 8 91296658 91296677 AGGTTTGTTAGCAGATGCTC 58 91296617 91296636 AAAGTTGGACGCTTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wars2 ENSRNOG00000019508 ENSRNOT00000026458 2 1 1 80 2 201244400 201252712 GACATTCTGTGCTACAAGTCC 59 201252751 201252772 AGCTAGATCCTGAACTAGTTCC 59 NA Rattus norvegicus 81 LOC100910787 ENSRNOG00000051167 ENSRNOT00000076562 1 1 1 60 8 41286325 41286346 TAGTCTCAGGAACAAGGATGTC 59 41286361 41286385 CATTGTGATTCTCCTCATAGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mansc1 ENSRNOG00000028526 ENSRNOT00000029510 1 1 1 80 4 168369967 168369985 TTTCTGTCCCAGTGAGGAC 59 168364224 168369925 AGTGGAACATCTCTGAAGAGC 60 NA Rattus norvegicus 81 AC110981.1 ENSRNOG00000026991 ENSRNOT00000037432 2 1 1 60 11 70688189 70688207 CTTCAACAGCAACTCCCAC 59 70688230 70688249 GTTATTGAGAGCAACGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 1 2 2 80 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692904 118692922 TCTGACTTTGTCCTCCCAG 59 NA Rattus norvegicus 81 Tonsl ENSRNOG00000014703 ENSRNOT00000019754 2 1 1 80 7 117699875 117699893 TACCACAAGGCTGTACACC 59 117699546 117699833 GAACCAAGTCTTAGCTTCCTC 59 NA Rattus norvegicus 81 LOC100912253 ENSRNOG00000045569 ENSRNOT00000074667 3 1 1 80 17 15428081 15428102 AAAGTCAGTTGAGCAGATTTGG 60 15427370 15428043 CTTTCTGGGAATTTCCTTGGTC 60 NA Rattus norvegicus 81 Sp4 ENSRNOG00000005472 ENSRNOT00000007625 3 1 1 104 6 146152964 146193120 CACTAGTGTTGCAGGTCAG 58 146152878 146152896 ATTGTCGCATTAGCGATCC 59 NA Rattus norvegicus 81 Ubash3b ENSRNOG00000008187 ENSRNOT00000010873 2 1 1 80 8 45259885 45262879 AGTTCTTCATGTGCGAGGA 59 45259823 45259842 ACTTACACCTCCATCGACTG 59 NA Rattus norvegicus 81 LOC100361944 ENSRNOG00000029172 ENSRNOT00000042226 2 1 1 60 6 95558834 95558853 TAGTGAAGCTAGGTACTGGT 57 95558874 95558894 CTCTTAAAGAAGGTGAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1542 ENSRNOG00000046780 ENSRNOT00000060891 2 1 1 60 11 43358212 43358230 GGATTCTCAGATCACCCAG 57 43358170 43358189 GATAGATCGCAGTGAACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065834.1 ENSRNOG00000048384 ENSRNOT00000074930 1 1 1 80 6 143130982 143131083 AGTAACTGCAGGAGTCCAC 59 143130920 143130938 AGCTTCACAGAAGTCCCAG 59 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 1 2 2 93 6 143901379 143909833 TGGAGATGGAACAGTTGACC 60 143909889 143909907 CTGTACAGCCTCTGCTGAG 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000064022 3 1 2 84 1 280383829 280383847 GAAGCAGAGGAGAACCCTG 60 280383895 280396919 TGTGGCCATAACCTGTCAG 60 NA Rattus norvegicus 81 Parp12 ENSRNOG00000008196 ENSRNOT00000011481 1 1 1 80 4 66866336 66866354 TCAGAAAGGTTTGTCGCAG 58 66853445 66866295 CGTGTAACTTAGTATTGCAGGA 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 2 1 5 168 20 5416725 5416837 ACTTTCCCAGAGATGGGAG 58 5416967 5417161 GTAGACTCCTCCTTTCCTACC 59 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000082538 2 1 5 95 20 5416958 5416977 AGAAACACAGGTGGAAAGG 58 5417399 5417553 TGCTTTACAATCTGGGAGAG 57 NA Rattus norvegicus 81 Gabarap ENSRNOG00000017417 ENSRNOT00000023724 3 1 1 92 10 56601347 56601366 TGTACAAAGAGGAGCATCCG 60 56601421 56601980 TTTCCACTATCACCGGGAC 59 NA Rattus norvegicus 81 LOC100909523 ENSRNOG00000049237 ENSRNOT00000074142 1 1 1 60 6 125317035 125317055 GAGTCTGCTTTGAGCATTACC 59 125316995 125317015 AAACGGTAGTAGTTGATGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 1 2 2 80 5 135021957 135024401 CAATCTACTCATCTTTCTCTGTGG 59 135021900 135021918 TTCAGGAAAGATGTCCCGT 59 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 2 2 2 80 5 135021957 135024401 CAATCTACTCATCTTTCTCTGTGG 59 135021900 135021919 TTCAGGAAAGATGTCCCGTC 60 NA Rattus norvegicus 81 Os9 ENSRNOG00000025570 ENSRNOT00000049895 3 1 1 80 7 70381616 70381634 CAGCTGAAACAGATCGAGG 58 70381389 70381575 TTTGATCTCAATCTTGCCTTCC 59 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 1 1 1 60 8 18431138 18433986 AGGCTAAGAACGGAGTCAG 59 18434009 18434028 ATTCTCACAGTCACATTGCT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 3 1 1 61 8 18431136 18433984 AAAGGCTAAGAACGGAGTC 57 18434009 18434027 TTCTCACAGTCACATTGCT 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dnmbp ENSRNOG00000050742 ENSRNOT00000074810 3 1 1 80 1 263687501 263687519 AGAGGCTGTTTGTTTGCAC 59 263679831 263687458 TAATCACCAGGTCTCCTCGA 60 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 1 2 3 80 4 164300938 164300957 GCATGGATGTAAACAGACCT 58 164295240 164300897 TGTAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Aldoart2 ENSRNOG00000030869 ENSRNOT00000043224 1 1 1 60 6 76349666 76349685 GAGACACTGTACCAGAAGAC 57 76349706 76349726 CCTTGGACTTGATAACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1i ENSRNOG00000047076 ENSRNOT00000041741 1 1 1 80 12 41157497 41161586 GATGTCCTAGGTCATGTAAGC 58 41161628 41161646 CAGGTACATGCACTTCCTG 58 NA Rattus norvegicus 81 Oas1i ENSRNOG00000047076 ENSRNOT00000041741 2 1 1 80 12 41157498 41161587 ATGTCCTAGGTCATGTAAGCA 59 41161629 41161647 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 Npsr1 ENSRNOG00000015863 ENSRNOT00000021625 1 1 1 80 8 25451633 25465794 CAATTATCAGCGTCATCTATGG 57 25465835 25465853 AGTTGGAAATCACCGTCTC 58 NA Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402,ENSRNOT00000067379 2 2 2 88 10 49023094 49023112 CAAGATGTACGGCAAGCAC 60 49023164 49024576 AGTACAATTTGTGGCCAGC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 1 2 2 80 8 19888836 19888855 CACACCTAGAGCAAGAAGAG 58 19888896 19890696 ATGTAGTTTCCCAATCTGGAG 58 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000076103,ENSRNOT00000039868 1 2 2 60 8 4548307 4548325 CACCAGTGTTCCATTGACC 59 4548265 4548283 TCTGTGATCCTGTAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1141.1 ENSRNOG00000014898 ENSRNOT00000020006 3 1 1 60 1 113024045 113024064 TATCTTGAAGGACATGCTGG 57 113024084 113024105 CAGTTTCATCTCTGAGTACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrfip2 ENSRNOG00000021047 ENSRNOT00000056060 1 1 1 80 8 119460290 119464972 GAAGAGAAATCAAAGGAGTTGG 57 119465013 119465031 GCCCTCTTTCAGTTCATCC 58 NA Rattus norvegicus 81 Itgb1 ENSRNOG00000010966 ENSRNOT00000014785 1 1 1 80 19 61716892 61716914 CTGGTTCTATTTCACCTACTCAG 58 61716954 61718277 CCAGTAGGACAGTCTGGAG 59 NA Rattus norvegicus 81 AABR07065823.1 ENSRNOG00000030235 ENSRNOT00000046885 3 1 1 84 6 142932978 142933078 AACAGCTACAGGTGTCCAC 60 142932912 142932930 AGACAACTTCACAGAGGCC 60 NA Rattus norvegicus 81 Fermt1 ENSRNOG00000021274 ENSRNOT00000028901 2 1 1 80 3 125604084 125604102 ATCACGCTGAGAGTGTCTG 60 125601763 125604042 GTCTTGGGCTATGTTCATCTG 59 NA Rattus norvegicus 81 Fermt1 ENSRNOG00000021274 ENSRNOT00000028901 3 1 1 80 3 125595439 125595457 ATTCAAGAGGATGAGCAGC 58 125584540 125595397 TCGGACAGCATCATATTTAGG 58 NA Rattus norvegicus 81 Mroh6 ENSRNOG00000032231 ENSRNOT00000048363 2 1 1 80 7 116916753 116916771 GGAGATGGTTACTGTGGCT 59 116916498 116916710 CTTGGATATCGGTGAACCAG 58 NA Rattus norvegicus 81 Ncmap ENSRNOG00000048139 ENSRNOT00000073506 1 1 1 87 5 153729428 153730377 TACAACAGGAGAATGAGGACC 59 153729361 153729379 CATTGCTGTTTGGGTCCAG 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864,ENSRNOT00000084946,ENSRNOT00000089723 1 4 4 83 1 128217240 128217258 GTGACAACTCCAAGCTTGC 60 128213308 128217196 GCTGGTCAATGAGTAATCAGTG 60 NA Rattus norvegicus 81 LOC365287 ENSRNOG00000012345 ENSRNOT00000016461 3 1 1 60 1 135226752 135226770 AGGACGATGAAGTTCAGGT 58 135226710 135226728 ATCACTTTGCCAATCTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irak1 ENSRNOG00000060869 ENSRNOT00000092207 2 1 1 80 X 156718187 156718432 GAACAGCTATCAAGGTTTCGTC 60 156718473 156718491 AACAAGGCAGTAGAAGCCA 59 NA Rattus norvegicus 81 Tex35 ENSRNOG00000038921 ENSRNOT00000006548 1 1 1 80 13 74730432 74730451 TAGTGAGAAGATGGTGGTCC 59 74730045 74730390 CACAACAAACATTTCTCGCA 58 NA Rattus norvegicus 81 Tex35 ENSRNOG00000038921 ENSRNOT00000006548 3 1 1 80 13 74730436 74730455 TGGCTAGTGAGAAGATGGTG 59 74730049 74730394 ACAAACATTTCTCGCATGCA 60 NA Rattus norvegicus 81 Psmd9 ENSRNOG00000001339 ENSRNOT00000057716 2 1 1 92 12 38787372 38787390 TGAATGTCATGGTGATCCG 58 38786756 38787316 TAATATTGCAGCCCAGCAG 58 NA Rattus norvegicus 81 Micall1 ENSRNOG00000026212 ENSRNOT00000036357 1 1 1 80 7 120367653 120367796 GCTCATTTATGTCTTCAAGCAG 58 120367837 120367855 TTATTGAGAAGGCACCGGA 59 NA Rattus norvegicus 81 Fan1 ENSRNOG00000023985 ENSRNOT00000031067 2 1 1 80 1 125193842 125198714 TGGAAGAGGCAATTTGGTG 58 125193780 125193800 GCTGATAAAGAGAAAGTCGGT 58 NA Rattus norvegicus 81 LOC690000 ENSRNOG00000014966 ENSRNOT00000020079 1 1 1 65 1 94579229 94579247 CCCACCAGGATTAGCTGTC 60 94585001 94585019 TGTCCACTTGTCATCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625,ENSRNOT00000092104 1 3 3 80 5 12444588 12444609 AAGGAACTGAATGAATCCAACC 59 12442657 12444552 GTTGCTCTCCATAGATGTTATCTG 59 NA Rattus norvegicus 81 Pelp1 ENSRNOG00000019268 ENSRNOT00000026102 1 1 1 80 10 56992353 56992651 GGAAACAGAGACTGCTCCT 59 56992291 56992313 TGAGTGTTATCATCTTCTGAGGG 60 NA Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 1 1 1 68 16 27472241 27472259 CTCTGAGGAGAAGATCGCC 59 27472175 27472210 TCTTTAGCTCTGTAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Akr1b7 ENSRNOG00000009875 ENSRNOT00000013423 2 1 1 80 4 61857934 61857953 CCCGTAGTGCTAGAGATTCC 60 61857994 61858511 GAATCGAATCAGAACCTGAGC 59 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 3 2 2 80 7 122114560 122120012 GATATGGTTCTGGCTTTAGCTC 59 122120053 122120071 TGAAGCGAGACTCAGTTCC 60 NA Rattus norvegicus 81 Col5a3 ENSRNOG00000020525 ENSRNOT00000027897 3 1 1 80 8 21787567 21787916 GGAAGAAGTTCTCCTATGTGGA 59 21787508 21787526 CAGCGCTCAACAACTTCAG 60 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 3 1 1 75 8 40160154 40160466 AAAGAACCTGGGAAACAGAG 58 40160098 40160116 AGGACTGGTATGACTGACG 59 NA DesignNoJunction Rattus norvegicus 81 Nip30 ENSRNOG00000017841 ENSRNOT00000024120 1 1 1 80 19 10842931 10843634 ACCCAGAAGAATGTCCAGAG 59 10843677 10843695 GCTGCTTCCTGTCTTTCTG 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 1 3 3 80 12 41341724 41342698 CTGAAAGTGGTTAAGGGTGG 59 41342739 41342759 GGTGAAGAGAACAAGTGTACC 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611,ENSRNOT00000042276 2 2 3 93 1 66018244 66020744 CCAAAGAGACATGAAGAGATGTC 59 66020796 66020815 CAGGAAGATCTCTGTCCTGG 59 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 2 2 2 82 4 169147343 169175827 ATACTCCAGAATTCTCTACTCAGG 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 2 2 2 80 10 56665028 56665048 GCATGTAAAGCAGTTAGTGTC 58 56665090 56665217 ATCCTTTCAGAGCCATTGC 58 NA Rattus norvegicus 81 LOC100363048 ENSRNOG00000032740 ENSRNOT00000050090 2 1 1 60 9 61552453 61552471 CCATCGGCATGTTCTTCAC 59 61552494 61552513 GTGTACTTGGTAGAGGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 3 2 2 84 4 33929641 33929659 GACATTCAGACGACAGTGG 58 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 3 2 2 80 7 66676180 66676200 AGAGATTCTCCTATAGTCGCT 57 66676241 66678441 CCGACATATCCAAGTCACTG 58 NA Rattus norvegicus 81 Arfip2 ENSRNOG00000018440 ENSRNOT00000025159 3 1 1 81 1 170468795 170468987 GCATCAACACATATAAGTGCAC 59 170468735 170468753 TCTAGCTCCAGATCCACAG 58 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000090316 3 1 5 85 4 164743613 164743633 GCGTGAATGTAAACAGATCTG 58 164520723 164743566 GGTCCTGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Odf3l2 ENSRNOG00000008199 ENSRNOT00000010832 3 1 1 83 7 12945098 12945116 TGGACCCGAAAGTTACTCG 59 12945160 12946505 CCTCCAGACCTCTAATCTTACC 59 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000047113 ENSRNOT00000072086 3 1 1 102 9 20217610 20217874 AAAGAAGAGCGGAGGAACC 60 20217526 20217547 AATGGCAGACTGGATATTTGAC 59 NA Rattus norvegicus 81 Prlhr ENSRNOG00000009922 ENSRNOT00000013170 1 1 1 60 1 281755658 281755676 CTTCTTGTGCTGGTGATCG 59 281755616 281755634 CGATGAGGAAGTTGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rwdd2b ENSRNOG00000001599 ENSRNOT00000050902 3 1 1 90 11 27089150 27089169 TGAGAAGAGGACAATGGAGG 59 27088921 27089097 AAACATCACCATTGCTGCC 59 NA Rattus norvegicus 81 Map4k5 ENSRNOG00000004923 ENSRNOT00000006705 3 1 1 80 6 92158793 92158815 GGGACTGAAGATGGTATTTACAC 59 92158376 92158755 GCATTTCCGTGGAAATAACTG 58 NA Rattus norvegicus 81 Gsg1 ENSRNOG00000008518 ENSRNOT00000011295 1 1 1 80 4 169036817 169036838 CAGAACCTCAACAGTGAATGAG 59 169027656 169036777 CCTTCTGGAACTCCATCTCC 60 NA InUTR Rattus norvegicus 81 LOC100911672 ENSRNOG00000049575 ENSRNOT00000051841 2 1 1 87 9 20277512 20277530 CACTGGAACAGCAACAGTG 59 20277579 20277731 TTCAGGTGACTGTAGTAGTCC 59 NA Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 1 2 2 80 13 73880824 73889867 GAAGGAAGAGAATGAGGATGAG 58 73880765 73880784 TCATCCCAAATGTCATCACC 58 NA Rattus norvegicus 81 Tmem254 ENSRNOG00000011276 ENSRNOT00000015011 1 1 1 80 16 3817691 3819592 CTACTACACGTGGGTTGTC 58 3819635 3819654 AAGTACTTTGTGAAGGGACC 58 NA Rattus norvegicus 81 Rn60_20_0064.3 ENSRNOG00000052841 ENSRNOT00000080672 2 1 1 60 20 4240837 4240855 GGTGAAGCTAAGGAACAGG 58 4240795 4240813 TACACCTTCCCTACAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024622 3 1 7 80 19 15309147 15309166 GAGCCATTTCTGAGAGTGGT 60 15309207 15310316 TAGCAATCATTTGAGCCACAG 59 NA Rattus norvegicus 81 RGD1304622 ENSRNOG00000000040 ENSRNOT00000004704 2 1 1 80 13 72871416 72872756 GAGCAATGGAGATGGAACG 59 72871354 72871373 GAGAGGGTGATAGCTGTAGG 59 NA Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000090717 2 1 2 80 4 61936936 61939862 GAAGAGCAGTATCTCAGACGA 59 61939903 61939922 TTCTCATCCAACTCCAGCAG 60 NA Rattus norvegicus 81 RGD1310049 ENSRNOG00000042309 ENSRNOT00000031083 1 1 1 80 1 31044803 31044821 ACTGAGACAAGGTCTGCAC 60 31042238 31044761 TGCTATGGACTCATCAGAACC 60 NA Rattus norvegicus 81 Abcb9 ENSRNOG00000001082 ENSRNOT00000045223 3 1 1 83 12 37947251 37955631 GAATACCTGATTCAGCAGGC 59 37955677 37955695 CTCTACAGTACTCAGCCGG 59 NA Rattus norvegicus 81 Gfra4 ENSRNOG00000021241 ENSRNOT00000047947 3 1 1 138 3 123580204 123580223 AACTACCTGGACAACGTGAG 60 123579344 123579362 CAAAGGCTTGTATGGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 2 2 2 80 7 70527906 70529225 GATTAAGCTGCCTGTGGAG 58 70527844 70527866 GACTTGATCTTGCTGATGTAGAG 59 NA Rattus norvegicus 81 Gfod1 ENSRNOG00000014007 ENSRNOT00000018739 2 1 1 83 17 23923487 23923505 AGGATGTGGACTTGGTGTG 60 23824734 23923440 CATTCTTGCCTATGCCCAG 59 NA Rattus norvegicus 81 Frzb ENSRNOG00000007765 ENSRNOT00000010247 1 1 1 80 3 67637096 67640680 GTAAGAAAGTCAAGCGCTG 57 67637034 67637052 GATTCTGAGTGGAATCGCT 57 NA Rattus norvegicus 81 AABR07065789.3 ENSRNOG00000058824 ENSRNOT00000040556 3 1 1 60 6 141321086 141321104 TGAAGCTGTTGGAATCTGG 58 141321044 141321064 CAGGAGAGTCTCATAGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063995.1 ENSRNOG00000056931 ENSRNOT00000042029 3 1 1 60 6 59531360 59531381 CACATTTCTACTGGTACCTCAC 59 59531321 59531340 AGGTGCAGGTAATCTTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab15 ENSRNOG00000007364 ENSRNOT00000010043 2 1 1 80 6 99849952 99850883 AGTGACGTGGATGAGTACG 59 99849890 99849908 CTGCCGTTTCTGTTCTTCG 60 NA Rattus norvegicus 81 AABR07054456.1 ENSRNOG00000014425 ENSRNOT00000019331 2 1 1 106 3 154437838 154437856 CAATTGCTTAAGCTGGCCC 60 154437926 154437961 AAGGTGGTGAAGAGGACAG 59 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 2 2 2 80 8 56236903 56239226 ATGTTAGGGATAACTGGCTCC 59 56239268 56239286 AATGAGTGGGTATGGTGCC 60 NA Rattus norvegicus 81 Tfap2a ENSRNOG00000015522 ENSRNOT00000041960 1 1 1 80 17 24660035 24661870 CTGTAATTAAGAAAGGCCCTGTG 60 24661908 24661928 GGTTGTCCTTGTTGATAGGGA 60 NA Rattus norvegicus 81 Myd88 ENSRNOG00000013634 ENSRNOT00000018341 3 1 1 83 8 128024560 128024579 GTTTCTGACGATTACCTGCA 58 128024242 128024514 CTTCTGTTGGACACCTGGA 59 NA Rattus norvegicus 81 LOC683038 ENSRNOG00000033014 ENSRNOT00000046081 2 1 1 88 16 12537800 12537948 CAGACAAGAGTGAGAATGATTCTG 60 12537735 12537754 TAGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Abl2 ENSRNOG00000004305 ENSRNOT00000059524 3 1 1 80 13 74232371 74232853 TTCATCCACAGAGATCTTGC 58 74232896 74232914 ACTTAGACCAAAGTCAGCC 57 NA Rattus norvegicus 81 Med29 ENSRNOG00000019702 ENSRNOT00000026720 3 1 1 60 1 85368513 85368531 CGCTACAAGATGCTCATCC 59 85368552 85369356 CAGCAACTTTCATCAAAGTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552,ENSRNOT00000088705 3 2 2 80 8 117512135 117514622 AGATAATGATCCAAGGGTGGT 59 117514663 117514682 AGCAGAATGTCTTTACAGGC 58 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 2 2 2 80 12 40702375 40703017 TTAAAGCAGCATGTGGAGAC 59 40703059 40703078 CTTGACAACAGAAAGCTCCA 59 NA Rattus norvegicus 81 Pcnx ENSRNOG00000007459 ENSRNOT00000010022 1 1 1 80 6 105659691 105664815 GGAAGTGAAGAACAAGATTTGG 58 105664855 105664874 TGGCTGAATAGAAACGAAGG 58 NA Rattus norvegicus 81 Pcnx ENSRNOG00000007459 ENSRNOT00000010022 3 1 1 80 6 105711494 105711512 GAAGAACCCAGAAGACCCT 59 105711555 105714066 TGTAAACGCTCACTTACGGA 60 NA Rattus norvegicus 81 Oxsr1 ENSRNOG00000013136 ENSRNOT00000018056 1 1 1 80 8 127971530 127971548 GACCATCGCTACAATCCTC 58 127962128 127971487 TTCACATCTCTGTGGATCTG 57 NA Rattus norvegicus 81 Cpeb3 ENSRNOG00000020689 ENSRNOT00000047387 1 1 1 80 1 255685221 255694409 CTTCGAGCTGTTGAACTGG 59 255685159 255685178 CTCTGGGTCTGTATCAATGC 58 NA Rattus norvegicus 81 Loh12cr1 ENSRNOG00000006505 ENSRNOT00000008645 1 1 1 84 4 168440825 168462924 TCAAAGAGATGGATCTGTCCG 60 168462969 168462988 ATCTGTTCAGCGTATTTGGC 59 NA Rattus norvegicus 81 Suclg2 ENSRNOG00000005686 ENSRNOT00000068274 3 1 1 80 4 127699029 127699047 ATAAAGGATAGCCAGGCCC 59 127682593 127698985 AATCTGATCTGCAGCCTGG 60 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 3 2 2 80 8 54973649 54973667 TGATGGGAGAAGCCTAGAC 58 54969924 54973607 TTTGCCTTATAGACCTGATCG 58 NA Rattus norvegicus 81 Mutyh ENSRNOG00000017887 ENSRNOT00000024375 3 1 1 81 5 135671752 135671770 AAGAGAAGCGTGACCTTCC 60 135671886 135672027 GACACCCAGACTGCATAGG 60 NA Rattus norvegicus 81 LOC312273 ENSRNOG00000013203 ENSRNOT00000017673 2 1 1 81 4 69191460 69192431 GAAATTTGGCTTTGAGAGTCCT 59 69191400 69191419 GTAGGCCTTGTGACAAACAG 59 NA Rattus norvegicus 81 Tmem256 ENSRNOG00000037540 ENSRNOT00000056870 1 1 1 114 10 56446437 56446718 GAAGGAGCTCTTTGACAAGG 59 56446892 56446910 AGTTCCAGAAGCTAGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Zc3h12c ENSRNOG00000012470 ENSRNOT00000080043,ENSRNOT00000016637 3 2 2 81 8 56673383 56673401 ATCGTGACAGATGATGGTG 57 56656911 56673339 CTTCTTTGTTTCCATGGCTC 57 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388,ENSRNOT00000088223,ENSRNOT00000074793 1 3 3 80 7 135560602 135560622 ACAGAGTCAGAATGTTCTGGA 59 135559393 135560562 CCACAAATGTCTTCCCTAGTG 59 NA Rattus norvegicus 81 Slc18a2 ENSRNOG00000008890 ENSRNOT00000011983 2 1 1 85 1 280447168 280448747 TTTGCAATTGGGATGGTGG 59 280448795 280448814 ACACTCCCATAGACAGACAC 59 NA Rattus norvegicus 81 Rbm25 ENSRNOG00000002874 ENSRNOT00000003834 1 1 1 80 6 107156306 107156324 TTGAGGAAATCAGGCAACG 59 107156368 107157797 CAGCCTCTTGTTCCATCCT 59 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218,ENSRNOT00000065373 2 2 2 80 10 91265034 91265053 TCCTCAATGAAGAGAACCGA 59 91265095 91265589 CCATGTCATACGCAACAGAG 59 NA Rattus norvegicus 81 Rn60_1_1354.1 ENSRNOG00000051332 ENSRNOT00000076660 1 1 1 66 1 134335898 134335916 TAAGCAGCATGAACGACTC 58 134335850 134335868 TAGGCATCACCCATCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef28 ENSRNOG00000016544 ENSRNOT00000065143 1 1 1 80 2 25787795 25787813 TGAAATCCACACCAGTTCC 58 25786669 25787754 TCTTCTGGACAACTTTCTACTG 58 NA Rattus norvegicus 81 Rgs16 ENSRNOG00000027024 ENSRNOT00000032236 2 1 1 97 13 71181675 71181693 AGAAGATCCGATCAGCCAC 59 71181748 71183321 GTGATCTATGTTTACCTCTTTAGGG 59 NA Rattus norvegicus 81 LOC691828 ENSRNOG00000048425 ENSRNOT00000073779 3 1 1 60 6 140879856 140879877 AGGATAAATTCACCATCTCCAG 58 140879817 140879836 TTGCTCATTTGCAGGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam25a ENSRNOG00000055025 ENSRNOT00000089114 1 1 1 108 16 10706008 10706026 TCACTGTCTGCTGCTACAC 60 10704139 10705936 TCCTCCACTGCATGAACTG 60 NA InUTR Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000083261 2 1 4 173 12 38385158 38385176 ATTGGCTTCCCTTCTACCA 58 38385312 38386227 GGATGCAAATAGTCCTGTCC 59 NA Rattus norvegicus 81 Creg1 ENSRNOG00000003291 ENSRNOT00000004394 3 1 1 93 13 83977678 83977697 ACAGACTGCCTACTGTAGGA 60 83977748 83978896 CTCATTTACTTTGATCACAGTCCC 60 NA Rattus norvegicus 81 Defb18 ENSRNOG00000039650 ENSRNOT00000060803 2 1 1 82 9 24467828 24467846 TTTCTGTGTCCTGTGGTCC 60 24467110 24467130 ACCAACCAGGAAACATTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Corin ENSRNOG00000002302 ENSRNOT00000064128 2 1 1 80 14 38352623 38402949 GGAAAGCAATCGCTCTGTG 60 38402992 38403011 GTTACACTGCAGCTTCTTGG 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 1 2 2 80 7 134619426 134619445 ATTGCCGAGTATGTAACGAG 58 134619487 134624161 AGCCAAATTCATCTCCTCTG 58 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660,ENSRNOT00000080031 2 2 2 80 17 29326207 29360199 AGCATGAGTTATTTGCTGGT 58 29326146 29326165 CTTGCTTATGAGCAGAACGA 58 NA Rattus norvegicus 81 Gnl3l ENSRNOG00000002509 ENSRNOT00000003397 1 1 1 80 X 20044956 20044977 AAGAACGGAGGTGTCTATAGTC 59 20044640 20044918 ATAGAAGCTGATCTTCCCACTC 60 NA Rattus norvegicus 81 Apba2 ENSRNOG00000016358 ENSRNOT00000022049 2 1 1 80 1 125491815 125509998 AAGAGCAGGTTTGCAATGG 59 125510040 125510060 TGTTGTTATTGTCAGTGGGTC 59 NA Rattus norvegicus 81 Iqcd ENSRNOG00000001378 ENSRNOT00000001860 2 1 1 81 12 41496937 41496955 ACCAGGAGATCATCGATGC 59 41495322 41496893 AAGTTCTCCTTCTCCACCTC 59 NA Rattus norvegicus 81 Lactb2 ENSRNOG00000007829 ENSRNOT00000010369 2 1 1 81 5 4992113 5001307 TATATCCAGGACATGGCCC 58 5001351 5001370 TCTTCTCGGTTATTTCGGTG 58 NA Rattus norvegicus 81 Ier5 ENSRNOG00000059406 ENSRNOT00000077157 1 1 1 258 13 72743967 72743986 GCCAAGTCTACTTGAGTGAC 58 72743003 72743021 GATGAGACTCGAGAGCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hcn2 ENSRNOG00000008831 ENSRNOT00000011837 2 1 1 80 7 12858304 12860542 ACAACATGGTGAACCACTC 58 12858242 12858260 AGCCAATACAGAGCATGTG 58 NA Rattus norvegicus 81 Cdkl4 ENSRNOG00000040266 ENSRNOT00000061975 2 1 1 80 6 3247161 3251197 GCACGAATTCTAATTCCAGGA 59 3247101 3247119 TCCCACAAGAAGTTCAGGG 59 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 3 2 2 94 5 12143594 12143612 CTGGAGTCCAGAAAGACCA 59 12141199 12143538 AATCTGTGTCAACTGATCCTC 58 NA Rattus norvegicus 81 Fbxl7 ENSRNOG00000024433 ENSRNOT00000031170 1 1 1 80 2 79077699 79077717 ATATCTCCAATGAGGCGGT 58 79071217 79077655 CTTTGGAGCATCCTGACAC 59 NA Rattus norvegicus 81 Adgrf4 ENSRNOG00000012535 ENSRNOT00000016906 1 1 1 80 9 20965318 20967982 CAACACAAGGTAAATGTGATGG 58 20968023 20968041 TTTCTCCACGGAAGTTCCA 59 NA Rattus norvegicus 81 AABR07065438.1 ENSRNOG00000031889 ENSRNOT00000050204 3 1 1 60 6 128739116 128739136 GATCTTTGACACAGAGAAGGA 58 128739158 128739176 TTTCTGATCAGCCTTTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpv6 ENSRNOG00000014714 ENSRNOT00000020616 2 1 1 80 4 70919351 70919688 TTCTTGAGGGTGGAAGATAGAC 59 70919292 70919311 GTCATCTTGTTGCTGGAAGG 59 NA Rattus norvegicus 81 AABR07033357.1 ENSRNOG00000047243 ENSRNOT00000072550 3 1 1 91 11 18454194 18454227 CATCAATGTCTTGGCCGTC 59 18454282 18454300 TCTTGGTGAGGTCGATGTC 59 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370,ENSRNOT00000066431 3 2 2 83 7 118179222 118179240 TAGTGCTGATGCAGACAGG 60 118176516 118179176 GCGGTAGCATTATTCACCTC 59 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 3 2 2 80 8 76407612 76407630 AGGTGGAGAAGTTGACCTG 59 76407672 76409502 TTGGGAAGATCATCTTCCCAC 60 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 2 2 2 80 6 7926988 7927088 TCCCACCAAAGAGTACCAG 59 7927132 7927150 CGTCCACTTCACTTTCTGC 59 NA Rattus norvegicus 81 Pkd2l1 ENSRNOG00000012591 ENSRNOT00000068007 1 1 1 80 1 263958348 263958369 GAGCTTTATGTCAAGACTACCC 59 263932204 263958307 TCCGTAGGTCAACAGACAG 59 NA Rattus norvegicus 81 Atxn2 ENSRNOG00000001256 ENSRNOT00000001691 1 1 1 80 12 40329499 40329520 TTGTTCAAATGCTCAGACTTCG 60 40307276 40329460 GTCAGTGAAAGCATCTCTTCG 59 NA Rattus norvegicus 81 Rimklb ENSRNOG00000023814 ENSRNOT00000032690 2 1 1 80 4 155260559 155262636 CAACTGTTCCCTAGGTGGT 59 155260497 155260520 ATATTAGACACCTGGATAGCTAGC 60 NA Rattus norvegicus 81 Pcdh18 ENSRNOG00000009949 ENSRNOT00000013343 3 1 1 80 2 138831009 138831028 GTGACCATCTCCTCAAACCA 60 138830116 138830966 CTGTGAGACCTCAACAGCA 60 NA Rattus norvegicus 81 Sp100 ENSRNOG00000022769 ENSRNOT00000034152 1 1 1 80 9 92704998 92705851 CTGAGATAATAGAGCTCAGCAG 58 92705890 92705910 TGGAGAGGATTAAGGTAGAGG 58 NA Rattus norvegicus 81 Ddx10 ENSRNOG00000012500 ENSRNOT00000017683 1 1 1 80 8 57792333 57795145 TGAATATGCACTGTCTCTTGG 58 57792273 57792292 TCTTTGTTGGGCTGTTTCTC 59 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000076651 1 1 2 87 20 5107633 5107651 TAGGCTGCATTTCTGGGTC 60 5107308 5107588 CGAACCTTAACATTCTGATAGATGG 60 NA Rattus norvegicus 81 Olr1083 ENSRNOG00000061480 ENSRNOT00000088783 1 1 1 60 7 13587700 13587721 TCAGTTAAAGGGAAGTACAAGG 58 13587661 13587679 AGGAGACAATGGAAAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogfrl1 ENSRNOG00000014142 ENSRNOT00000019062 1 1 1 80 9 29635062 29640397 AACATCTGAATGAGTCTCAGC 58 29635002 29635020 AACTCTCGTACCCAAGCTC 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 1 2 2 80 9 92892554 92892577 CTCAAGTTAATGATGAACCTCCTC 59 92892615 92893236 CACAAACACCTTGAACACGT 60 NA Rattus norvegicus 81 G6pdx ENSRNOG00000056728 ENSRNOT00000080887 1 1 1 80 X 156291771 156291790 GCAGATGTTGTGTCTAGTGG 59 156291830 156291973 AACACTTTGACCTTCTCATCAC 59 NA Rattus norvegicus 81 Wdr24 ENSRNOG00000019713 ENSRNOT00000026697 3 1 1 80 10 15194511 15194607 TCATCACCAATGAGGATAACG 58 15194649 15194667 CCTCTCCTTCTACGTCACC 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095,ENSRNOT00000061921 1 2 2 80 6 6967134 6967838 ATGGCTCAGATACCTTCTACTC 59 6967876 6967897 CCACTCTGATTTCACCTTTGTC 60 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 3 2 2 82 1 143718889 143723671 CCATGAAACTGCATTTCTAGG 57 143718827 143718846 TCCGTTTGTTTGACTTTCCA 58 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126,ENSRNOT00000077125 3 2 2 80 1 175200554 175202131 ACTGAGAAGACTCTTCCCG 59 175200492 175200512 CAAACCCAGTTCATCAGTGAG 59 NA Rattus norvegicus 81 Iapp ENSRNOG00000012417 ENSRNOT00000016614 3 1 1 65 4 176511046 176511064 TGTTCTCCTCATCCTCTCG 58 176511093 176515745 TTGGTACCACTTCCGACAG 59 NA DesignRelaxed Rattus norvegicus 81 Pdgfrl ENSRNOG00000010832 ENSRNOT00000014623 1 1 1 80 16 54434109 54434127 TGTAAGGGAAGCAAAGTGG 58 54398765 54434065 ATTCTGTTTCACGGTGAGG 58 NA Rattus norvegicus 81 Sval2 ENSRNOG00000025541 ENSRNOT00000021986 2 1 1 80 4 71342257 71344081 GTATGGCGGTGAAAGTCAG 59 71344123 71344143 AAAGGCAGGAAGTGTAAATGG 59 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000021688 ENSRNOT00000029783 1 1 1 60 7 36826678 36826699 GAGTCTATGTTCCATACCACAC 58 36826720 36826738 GTAACCCATAAAGCTCGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 1 2 2 60 16 18640762 18640780 TAGAGTACCTGGCTCACTG 58 18640396 18640739 TTCTTCTCTTCAGCTTTGGT 57 NA DesignNoJunction Rattus norvegicus 81 Phf8 ENSRNOG00000002708 ENSRNOT00000045708 1 1 1 80 X 21093360 21093381 TACTATTACAGTGGGAAGAGGG 59 21093420 21094892 CACAAGGTTTGAAAGTCTGGT 59 NA Rattus norvegicus 81 Vwa7 ENSRNOG00000000860 ENSRNOT00000001153 1 1 1 80 20 5014847 5014868 GGTGATCTTTACCAAAGACCAG 59 5014909 5015654 GGAAGAGTCACCAGACCAG 59 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 1 2 2 80 8 94352166 94352185 ATTGTCAACCAGGAGATCCA 59 94350421 94352125 CAGAAGATACCTGTCGAAGTC 58 NA Rattus norvegicus 81 Ccl5 ENSRNOG00000010906 ENSRNOT00000014865 3 1 1 98 10 70743038 70743056 CTTTGCCTACCTCTCCCTC 59 70740088 70742976 CGAGTGACAAAGACGACTG 59 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 3 2 2 110 20 5115205 5115778 AGAACCAGAACCGATCACC 59 5115852 5115870 TAGACAGTGACAGCAGGTG 59 NA Rattus norvegicus 81 Cops7b ENSRNOG00000018723 ENSRNOT00000025411 2 1 1 80 9 93626407 93628015 TTGCATGAATGGTGTGACG 59 93628058 93628077 CTCTTTGTACTGGTTGGCTC 59 NA Rattus norvegicus 81 AABR07065705.3 ENSRNOG00000059199 ENSRNOT00000075502 1 1 1 130 6 139747389 139747407 AATCCCGACTGAGCATCAG 60 139746906 139747295 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Slc8b1 ENSRNOG00000001383 ENSRNOT00000038736 1 1 1 80 12 41578902 41578920 CATCATCTGCACTTGGGTC 59 41576900 41578859 GTCAGTAGCTCTGGTGTCTC 60 NA Rattus norvegicus 81 Tmx2 ENSRNOG00000005308 ENSRNOT00000007914 3 1 1 82 3 72073862 72074351 TTTCTGAGGAGAATGTGATTCG 59 72073801 72073819 CATGTCTCCACCCTTTGAG 58 NA Rattus norvegicus 81 Lins ENSRNOG00000042776 ENSRNOT00000018463 2 1 1 82 1 127623682 127623701 GTCTTCATAGAGCAGGACGA 59 127623745 127624683 TCCCATTCTCTGGTCAAGTG 60 NA Rattus norvegicus 81 Phtf1 ENSRNOG00000019785 ENSRNOT00000026863 3 1 1 80 2 206475076 206475095 CGACCAGAGATCAGAATGTG 58 206475138 206477364 CCTATAAGCCTCCCTACGG 58 NA Rattus norvegicus 81 Crisp2 ENSRNOG00000013225 ENSRNOT00000017996 1 1 1 80 9 23514072 23514530 ACTACACTCAGCTTGTTTGG 58 23514570 23514591 ATTTCAGGGTATCTTGATTGGG 58 NA Rattus norvegicus 81 Crisp2 ENSRNOG00000013225 ENSRNOT00000017996 3 1 1 80 9 23514071 23514530 CACTACACTCAGCTTGTTTGG 60 23514569 23514590 TTTCAGGGTATCTTGATTGGGA 59 NA Rattus norvegicus 81 LOC687780 ENSRNOG00000047365 ENSRNOT00000039337 3 1 1 61 6 86131456 86131475 TGGGAGGTAAAGTTCATGGT 59 86131499 86131517 CTTGGGAGTCTGACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plac8 ENSRNOG00000002217 ENSRNOT00000003012 2 1 1 104 14 10706332 10706350 CTTGGATGTCAAGTGGCAG 59 10706418 10709843 AATAGACCCAGGAATGCCG 60 NA Rattus norvegicus 81 Synm ENSRNOG00000014030 ENSRNOT00000050832 1 1 1 80 1 128701342 128701360 GGAAGGAGAAAGCAATCCG 59 128698294 128701301 TAGGATGTGTTTCTGGACTCTC 59 NA Rattus norvegicus 81 Klrg2 ENSRNOG00000006814 ENSRNOT00000009194 1 1 1 85 4 66375513 66375531 AAGTCCAAGACTGGGAGAG 58 66372068 66375464 TAAGAAGTCCTGGGTGTGG 59 NA Rattus norvegicus 81 Btnl2 ENSRNOG00000028541 ENSRNOT00000060366 3 1 1 80 20 4152124 4152142 ATGTGACCTGCTCCATCAG 60 4152184 4153061 ACAAAGCTATCCTGGAGTCTG 60 NA Rattus norvegicus 81 LOC685081 ENSRNOG00000042660 ENSRNOT00000040498 2 1 1 80 8 127911408 127911427 ACTCTACATGGTTCTGTGCT 59 127911133 127911368 CACTCTGAAACAAGGATCATGG 59 NA Rattus norvegicus 81 LOC286960 ENSRNOG00000013245 ENSRNOT00000017852 2 1 1 82 4 69208162 69209029 CCTGTGATGGTGACTCTGG 60 69208098 69208116 CATTGCACAGACTGAACCC 59 NA Rattus norvegicus 81 Plcz1 ENSRNOG00000008514 ENSRNOT00000011376 3 1 1 80 4 174126102 174126121 AAACTCAAGGCTTCCTATCG 58 174125258 174126061 GACGATAACCTTTGTTCATGC 58 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000072502 1 1 2 80 3 154045023 154045041 GAATGCTGCATTTACTGGG 57 154045085 154045353 CCTGAACACCTCACTTCTC 58 NA Rattus norvegicus 81 Tmc7 ENSRNOG00000016679 ENSRNOT00000022800 2 1 1 80 1 188219454 188222871 CATTGAAGGGAAGTTTGGC 57 188219392 188219411 AATATCACCAGGTTCAGCAC 58 NA Rattus norvegicus 81 Fam150a ENSRNOG00000048703 ENSRNOT00000073694 2 1 1 81 5 12898117 12900709 GCATTTCACAGGACCTGTC 59 12898054 12898074 CGAGCAATCTCTGGTATTGTG 59 NA Rattus norvegicus 81 Slc3a1 ENSRNOG00000007006 ENSRNOT00000009581 1 1 1 80 6 8285327 8285347 GTCCCATGTACCAGATCTACC 60 8285386 8288810 TCTCTTGGATACCTTTCAGGTC 59 NA Rattus norvegicus 81 Shcbp1l ENSRNOG00000002691 ENSRNOT00000003661 1 1 1 80 13 70876055 70877808 ACATCACTATAAAGGGAGTTGG 58 70877849 70877867 TGGATACCACAAAGCTGTC 58 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 1 2 2 80 10 90304447 90305082 ATGACAGAAAGAGTGTTCCG 58 90304386 90304404 CAGAAAGCTATCCAGGGAG 57 NA Rattus norvegicus 81 Gns ENSRNOG00000047350 ENSRNOT00000064349 3 1 1 80 7 63479646 63479664 AGTACCAGAAGGCTTTCCC 59 63479707 63481758 TTAACCAGTGCTTGTTCGTC 59 NA Rattus norvegicus 81 Fem1a ENSRNOG00000050646 ENSRNOT00000072771 3 1 1 60 9 10800082 10800100 ACCTTCCTAAGCCTGAACC 59 10800040 10800059 CTCACCTCCCTGGAATAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc18 ENSRNOG00000020080 ENSRNOT00000027204 2 1 1 90 16 9253710 9256995 CCAGGAAGAATGGAGTGTG 58 9257049 9257067 ACTTTGGGTTCTCATGCAG 58 NA InUTR Rattus norvegicus 81 Fam193a ENSRNOG00000013832 ENSRNOT00000018616 3 1 1 80 14 81586389 81587031 GAACGCAGAGACATCTCAG 58 81586327 81586346 GACCATGTAGCGTACTTCTG 58 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355 2 1 2 89 3 143804040 143804059 AGCTACAAGATGACCAATGC 58 143803890 143803991 ACAATCCATGAATCTTCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000060181 2 1 2 86 7 117951209 117951227 GTCTGGATTCCGGTCAGAG 60 117951275 117953478 TAAAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Dopey1 ENSRNOG00000022847 ENSRNOT00000014783 2 1 1 80 8 94193948 94195078 AGCCACAAAGAACTTGAGAC 59 94195121 94195139 GCAGCCATGAAATGAACAC 58 NA Rattus norvegicus 81 Rrp8 ENSRNOG00000018766 ENSRNOT00000025651 1 1 1 80 1 170576718 170576948 CCAAACAGTTCACAATTCTAGG 58 170576659 170576678 GAGTTAGGTGATGCAGACTC 58 NA Rattus norvegicus 81 Ptges3 ENSRNOG00000002642 ENSRNOT00000003787 2 1 1 81 7 2490585 2492588 GAAAGGGCCAAACTTAATTGG 58 2492628 2492649 TAGACATGTCTTCATCTGAGTC 57 NA Rattus norvegicus 81 Slc37a3 ENSRNOG00000008725 ENSRNOT00000011915 1 1 1 80 4 67132913 67133484 GTCACCAGAAGAAATTGGTCTC 59 67132854 67132873 CCATTAATGAGTGGCCTCTG 59 NA Rattus norvegicus 81 Slc37a3 ENSRNOG00000008725 ENSRNOT00000011915 2 1 1 80 4 67132792 67132810 GAGGACAGAGCTGTCATCC 60 67130777 67132750 CAGTGAGTACGGTATGACTCC 60 NA Rattus norvegicus 81 Slco1a1 ENSRNOG00000036984 ENSRNOT00000049154 3 1 1 80 4 176159000 176161691 CAGTTTCAGGCACATTTACC 57 176158939 176158960 AGTATCAGAATGAAGAAGGCAG 58 NA Rattus norvegicus 81 Ccpg1os ENSRNOG00000052869 ENSRNOT00000089949 1 1 1 83 8 79660266 79660285 CAGACTTCTCGCTATCAGGA 59 79656472 79660222 TTTCTTATCCAAGTCGCAGTC 59 NA InUTR Rattus norvegicus 81 Blvra ENSRNOG00000011778 ENSRNOT00000015843 2 1 1 80 3 119567320 119572454 CACAGAAAGGGAGAGTCCT 58 119572497 119572516 CCAACACTTCTCTTCTCAGG 58 NA Rattus norvegicus 81 Srsf7 ENSRNOG00000027360 ENSRNOT00000038448 3 1 1 80 6 2883610 2883630 TAGATCACATTCCCGATCCAG 59 2883469 2883569 GATGCTGATCTTGACCTCCT 59 NA Rattus norvegicus 81 LOC100909700 ENSRNOG00000048783 ENSRNOT00000071704 1 1 1 80 1 81610251 81610270 TGACTTTGTCACCTGTCCTC 60 81609656 81610208 GTGGAAGACAGTCCACCTC 60 NA Rattus norvegicus 81 AABR07028989.1 ENSRNOG00000050441 ENSRNOT00000040132 1 1 1 80 10 1642916 1642937 GGTTGTCTCTACAATACTTGGG 59 1642978 1645977 CTTGCAGTCGTTGACTCAG 59 NA Rattus norvegicus 81 Alox15b ENSRNOG00000007778 ENSRNOT00000010415 1 1 1 80 10 55779476 55782695 GACATGTACAGCTGGAAGAC 58 55779415 55779435 GTTGAGGTCCAAGTCTTTCAC 59 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829,ENSRNOT00000015718 2 2 2 80 19 16914727 16955430 GAGAGTGTGACAAATGCCG 59 16914665 16914684 GGCAGACAGAATTTCACTCC 59 NA Rattus norvegicus 81 Dennd2d ENSRNOG00000017680 ENSRNOT00000023807 3 1 1 80 2 209103259 209103278 AAAGCCATCCCTTTGTTCTG 59 209103320 209103916 AAATGAGAAGGTCTCCCTGG 59 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 2 1 2 80 9 98398235 98406814 GCTTGTTAAAGAGGTTGCAG 58 98410185 98410204 TGAAGCTTGTTTGGATCAGG 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 3 8 10 80 10 87127520 87128308 AGGTACAGCAGAAAGGTCTG 60 87127459 87127480 ACCAATAATCTTGCCAATCTCC 59 NA Rattus norvegicus 81 Flywch1 ENSRNOG00000004333 ENSRNOT00000005879 2 1 1 84 10 13097336 13098374 CAGGAGTGGTACGGTATCG 59 13097270 13097289 TTGTAGAGGAAGGACTGGTG 59 NA Rattus norvegicus 81 Prkcg ENSRNOG00000054371 ENSRNOT00000080032 1 1 1 80 1 64425153 64426266 CCATATTACTGTGGGTGAGG 58 64425092 64425111 AGCTTCAGTTTCACATAGGG 58 NA Rattus norvegicus 81 AABR07051565.1 ENSRNOG00000053188 ENSRNOT00000058260 3 1 1 78 3 17180425 17180446 AGCTTTAGAGATGGAGACAGAC 59 17180725 17180743 CACAATGTCACCAGTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891,ENSRNOT00000011000,ENSRNOT00000084499 3 3 3 80 6 3784823 3784841 AAAGTCAGCGGAAAGACTG 58 3783518 3784780 AGTAGTCTTCCTCTGTGCAG 59 NA Rattus norvegicus 81 Tmem87b ENSRNOG00000017443 ENSRNOT00000023569 3 1 1 81 3 121371986 121375125 GTTATGGCATTGTAAAGCCG 58 121375167 121375187 GCTGCAAAGATCAAGTAAAGC 59 NA Rattus norvegicus 81 Nbeal2 ENSRNOG00000027880 ENSRNOT00000056130 3 1 1 80 8 118898174 118898280 GTGAGGGAGAAATATGAGAGC 58 118898114 118898132 TGCATTGGAATAGTGCGTG 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975,ENSRNOT00000051687 2 2 2 80 4 70968643 70968665 TAGTGAGGAGATTGTTAGACTGC 60 70968393 70968608 TGTAGTACTGTATTTCCCAAGGAG 60 NA Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856,ENSRNOT00000066943 2 2 2 94 1 216819389 216819407 CAAGGTAAGCAGCACAACC 60 216818429 216819333 GATTAATGAGGTGAGTGCCAG 59 NA Rattus norvegicus 81 B3galt5 ENSRNOG00000030983 ENSRNOT00000050178 1 1 1 84 11 36677881 36679002 CTTACCTGGCAAAGATGGC 59 36679050 36679068 CTGAAGTACAAGCAGAGCG 59 NA InUTR Rattus norvegicus 81 Foxd1 ENSRNOG00000043332 ENSRNOT00000066819 1 1 1 60 2 28460472 28460490 GAGGAGACAGACATCGACG 60 28460514 28460532 CATCGTCCTCTTCCTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf10 ENSRNOG00000051993 ENSRNOT00000087037 3 1 1 84 16 10250778 10250797 GAGAAGTACAACCGGAGAGG 60 10250844 10258757 TCTGGTCGATCACATCCAG 59 NA Rattus norvegicus 81 Cym ENSRNOG00000018236 ENSRNOT00000024593 3 1 1 80 2 209965787 209965805 TCATAGGCTCACTGCACTG 60 209964988 209965747 CATCATTGATTGTGATCCTGTCC 60 NA Rattus norvegicus 81 Adamts4 ENSRNOG00000003538 ENSRNOT00000004713 1 1 1 80 13 89625402 89625421 TAGGAGCTGTGCTATTGTGG 60 89625464 89626002 ATGTTGAAGACATGGCCCA 60 NA Rattus norvegicus 81 Frg1 ENSRNOG00000009846 ENSRNOT00000013078 1 1 1 80 16 53965156 53975308 TTCAAGATGGGAAGATGGC 58 53975350 53975370 TCTTTGCTTCTATATCGCCTG 58 NA Rattus norvegicus 81 Ccdc96 ENSRNOG00000006575 ENSRNOT00000008601 3 1 1 148 14 79445374 79445392 TTAGCTCCGAACCTCTGAC 59 79445085 79445105 GTATTCATGCTCGTCTGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 AC112531.1 ENSRNOG00000031588 ENSRNOT00000047649 2 1 1 80 2 148801617 148801637 TCTGGGTTTAATCCCATGGAC 60 148800802 148801576 CTGAAAGACTCTGCATGCTC 59 NA Rattus norvegicus 81 Tmem192 ENSRNOG00000030199 ENSRNOT00000042181 3 1 1 80 16 26628818 26633301 CTTATACACGTCGTGTTTGTC 58 26628758 26628776 GCACTTGTCTTCATTGGGA 58 NA Rattus norvegicus 81 Andpro ENSRNOG00000031840 ENSRNOT00000049635 3 1 1 80 3 143895534 143896318 TAACCTAAAGCGGACTCCT 58 143895472 143895491 TTAGATAGGAGCTTCCTGCA 58 NA Rattus norvegicus 81 Bfsp1 ENSRNOG00000005707 ENSRNOT00000007727 2 1 1 91 3 137937932 137939443 ATTGAAGGCAACAGGTTGAG 59 137937860 137937878 TTGGATCCAAGGCTGAGAG 59 NA Rattus norvegicus 81 Tstd1 ENSRNOG00000047123 ENSRNOT00000074035 2 1 1 81 13 89806307 89806816 ACTCAACATCCCTGTGTCTG 60 89806857 89806878 CTTCTCAGCACAGTATGAAGTC 59 NA Rattus norvegicus 81 Coa5 ENSRNOG00000018102 ENSRNOT00000024366 2 1 1 98 9 44024758 44024777 ATTATGAGGACAAGCCGGAG 60 44023270 44024697 ACTTTCCTTCCTGGAGCAC 60 NA Rattus norvegicus 81 Siah1 ENSRNOG00000015143 ENSRNOT00000020329 2 1 1 60 19 21394319 21394337 CAAGTCCATTACCACCCTG 58 21394358 21394379 AAGGTTAATGTCTGTAGCAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnbd2 ENSRNOG00000019992 ENSRNOT00000027086 1 1 1 80 3 152462716 152462738 CGGATGATACACTTTCACAACTC 60 152462776 152464854 GGCGAAGACTTACACATTCTG 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 1 2 2 80 2 210868046 210868064 CTGGAGCCAGATATTCTGC 58 210867892 210868004 CTCCTTGTACAGCTGTAAGTC 58 NA Rattus norvegicus 81 Mgat4a ENSRNOG00000018276 ENSRNOT00000024701 3 1 1 80 9 44079901 44085457 AAGAACGGGAGTTTCAATAGTC 59 44079842 44079862 GAGTGAAGGGTCTCTATGAGG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 1 1 3 148 11 36762882 36770740 GGAAATCTGCAAATGTGAGG 58 36775503 36778513 GCATCTCTTCTTTCCAGGG 58 NA Rattus norvegicus 81 Ptov1 ENSRNOG00000020358 ENSRNOT00000027580 2 1 1 105 1 100861156 100861174 AGTCATGGAGTGGCAAGAG 59 100860905 100861013 CTGATCCGTTCTCAGGATCTC 60 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000056551 2 1 2 87 10 58866750 58868883 CCCACATGAAACAGTGTTCG 60 58868932 58868951 ATAAGTGGAAGGGTTGAGGG 59 NA Rattus norvegicus 81 RGD1561281 ENSRNOG00000061130 ENSRNOT00000089610 3 1 1 138 10 87541762 87541780 GATCCTTCTCCTCCCAGAG 58 87541642 87541661 CAGATGGGCCTAGTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sohlh2 ENSRNOG00000038091 ENSRNOT00000044424 1 1 1 80 2 144601940 144601959 GAATGCAGACTCTACTTCCA 57 144602000 144604829 CAGTTCAGAGCAAAGAAACAG 58 NA Rattus norvegicus 81 Nifk ENSRNOG00000025701 ENSRNOT00000061619 3 1 1 84 13 34269292 34271720 CAGAAGTAAGCGGACTGGA 59 34271766 34271786 TGTTTCTGCAACTATCTTGGC 59 NA Rattus norvegicus 81 Kiz ENSRNOG00000025141 ENSRNOT00000036527 1 1 1 80 3 141157847 141157865 CAAGACAAAGACAGCCCAC 59 141157907 141171768 CTTTCATGCCTTGACAAAGGA 59 NA Rattus norvegicus 81 Tmeff1 ENSRNOG00000008034 ENSRNOT00000065775 2 1 1 80 5 64346747 64346768 ATCATCGTGTAAGTATGGAGGT 59 64346807 64352387 TTTGTATGGCACTGAAACTGG 59 NA Rattus norvegicus 81 Rbpjl ENSRNOG00000026295 ENSRNOT00000019127 3 1 1 80 3 160860142 160860160 AAGGTTACATCCGCTATGG 57 160860203 160860497 TTCGGATGATCATAGGAGGA 57 NA Rattus norvegicus 81 Tlk2 ENSRNOG00000006285 ENSRNOT00000066484 1 1 1 80 10 93476300 93478028 GTCATCTTAAGAAAGAGGAAGCAG 60 93478064 93478085 ATTCCCTGATGTGTAGATTCCT 59 NA Rattus norvegicus 81 Krtap16-1 ENSRNOG00000061192 ENSRNOT00000071896 2 1 1 60 10 87919316 87919334 TTCTTACTCCTACCGCCCT 60 87919274 87919293 CTTATCGCTGTCAGAATCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnb3 ENSRNOG00000002951 ENSRNOT00000003954 1 1 1 80 X 16401705 16401724 AAACCATTTGCTGAACTTCC 57 16401764 16402019 ACTTCAAAGTAGGTCTCTTCAG 58 NA Rattus norvegicus 81 Neto2 ENSRNOG00000016245 ENSRNOT00000021739 3 1 1 91 19 22461413 22480283 CCCGAAAGCTAAGATTTACTTGAG 60 22480333 22480351 TCCCATCATAGACTGCCAC 59 NA Rattus norvegicus 81 LOC100912866 ENSRNOG00000029597 ENSRNOT00000043327 3 1 1 153 10 92784189 92787490 CAAGACTTGGAAGAGCTACC 58 92784055 92784073 GGAAAGTCCTTGTCACCTG 58 NA Rattus norvegicus 81 Brwd1 ENSRNOG00000001632 ENSRNOT00000002231 3 1 1 80 11 36370363 36370383 GGAACTGTGTTGAGTCAAGAG 59 36369450 36370321 GTTGTCCCACCTAACACTG 58 NA Rattus norvegicus 81 Krt9 ENSRNOG00000014370 ENSRNOT00000019330 3 1 1 80 10 88104669 88104688 GCGTGAGGAATATGAACACC 59 88103932 88104627 TCAATCTGGGTCATCTTGGA 59 NA Rattus norvegicus 81 Hmgcr ENSRNOG00000016122 ENSRNOT00000022055 1 1 1 80 2 27494780 27494800 TGATTGACCTTTCTAGAGCGA 59 27493507 27494744 CTATATTCTCCCTTACTTCATCCTG 58 NA Rattus norvegicus 81 AABR07033889.1 ENSRNOG00000046676 ENSRNOT00000074327 1 1 1 65 11 43182378 43182396 CTTTCTTCACCTGCAGTGC 60 43182428 43182447 ACATGAAGAGGAGAGTACCA 58 NA DesignNoJunction Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000006849 1 1 2 86 13 90391593 90401168 ATACTCTACAGGGAGCTGTC 58 90391526 90391544 AGTCAACTGTCACCCTGAG 59 NA InUTR Rattus norvegicus 81 RGD1564018 ENSRNOG00000022308 ENSRNOT00000011092 2 1 1 60 1 236530345 236530364 GACTTTCACCAGATTCCCAG 58 236530304 236530322 TTTACAGTTTGTGCTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lypd6b ENSRNOG00000004614 ENSRNOT00000065989 1 1 1 102 3 35434211 35434230 GGAAGAAGTACGTCCATCAC 58 35434295 35435847 AAGACCTACACTCCGTGTG 59 NA Rattus norvegicus 81 Tbc1d8 ENSRNOG00000013583 ENSRNOT00000018640 1 1 1 80 9 46110940 46111837 GATGATGACATGGCTTCACC 59 46110879 46110900 AGAAGACACCATCTCAAGATCC 60 NA Rattus norvegicus 81 Rn60_10_0876.8 ENSRNOG00000059238 ENSRNOT00000086748 2 1 1 60 10 87798119 87798137 TCACCCTCTTACCCTCCTC 60 87798159 87798179 TGTCATCTATGAAGCTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 1 1 1 81 1 65566943 65567606 CATGTTCATCCACTCTGGG 58 65567651 65567669 TTTGAGCAGATAGTCGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Ubl5 ENSRNOG00000020442 ENSRNOT00000027749 3 1 1 80 8 21663913 21663931 ACCCGCTGGAATAAGATCG 60 21664113 21664883 GTGGATCTCATAGTCTCCCAG 59 NA Rattus norvegicus 81 Pdxdc1 ENSRNOG00000002407 ENSRNOT00000003284 3 1 1 80 10 3275712 3275733 GGTTGTCTCTACAATACTTGGG 59 3272686 3275671 CTTGCAGTCGTTGACTCAG 59 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639,ENSRNOT00000091418 1 2 2 80 2 27313229 27313247 GAACAGTACAGCTTGTGCC 59 27311319 27313186 GACAGTTCTGCCCTTAAGTC 58 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 2 2 2 80 10 88161957 88161976 ACCTGGAGATGCAGATTGAG 60 88161310 88161915 TCAGAGCATTCATCTCCTCC 59 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879,ENSRNOT00000028277 1 2 2 81 10 89991036 89994069 CTTGAAACCTCGTTGCCAG 60 89994114 89994132 TTCTGAGACATTCGGGAGG 59 NA Rattus norvegicus 81 Sit1 ENSRNOG00000021546 ENSRNOT00000035040 3 1 1 107 5 58986845 58986988 CTATTTACAGACAGGACGGCT 60 58986667 58986685 AGACTCGTGTAACACGTGG 60 NA Rattus norvegicus 81 Krt32 ENSRNOG00000013611 ENSRNOT00000091394 3 1 1 80 10 87997285 87997387 GTTCAATATGCAGATGGAGGA 58 87997225 87997245 ATGATGTCTGACTGGTAACTC 57 NA Rattus norvegicus 81 Kif7 ENSRNOG00000026857 ENSRNOT00000033491 2 1 1 80 1 141443939 141443960 CACTACATCAGAGGAGGAAGAG 60 141443479 141443898 TTGCTGATTCCATTCCTGC 59 NA Rattus norvegicus 81 Ptp4a1 ENSRNOG00000011771 ENSRNOT00000016237 1 1 1 80 9 37226381 37226660 TTCATGTTCTTGACTGGCC 58 37226319 37226340 TCTTCACAAGACTTAACCAGTC 58 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 1 2 2 80 3 138536755 138542460 GGTACCAGACTGCCTTACC 60 138542504 138542522 CTTCTGATCCCACCAGACG 60 NA Rattus norvegicus 81 Pcif1 ENSRNOG00000016870 ENSRNOT00000023202 2 1 1 80 3 161354603 161354750 CTACTTCAGCAAACTGTGGC 60 161354793 161354811 CAGACTCTAGGCAGGAACC 59 NA Rattus norvegicus 81 Olr1667 ENSRNOG00000028439 ENSRNOT00000038213 3 1 1 60 19 24671164 24671183 GCACAGATAATCACATCCCT 58 24671205 24671224 GGTGGAGTTGATTGGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a32 ENSRNOG00000004403 ENSRNOT00000006029 3 1 1 85 7 77998571 78004652 CTTCGCTGTGAGTGATGGA 60 77998504 77998524 GTCCATCGACTTTCCAAATGG 60 NA Rattus norvegicus 81 Zfp763 ENSRNOG00000057416 ENSRNOT00000081512 2 1 1 87 7 15300096 15301022 AAATCTGCGAACTCAGACG 58 15300027 15300045 ATATCCTGGAATCCGGTGG 59 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 1 2 2 80 13 84617727 84617745 TCCAGGAATTGGAGGATGG 59 84612932 84617683 CAAATAGGGCTGGTACCCA 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453,ENSRNOT00000083915,ENSRNOT00000086967,ENSRNOT00000079684 3 5 5 80 9 28445516 28445537 TTGGAGGTTGAGGTTATCAGAG 60 28444644 28445476 TACTTTCACATAGGGAGCGG 59 NA Rattus norvegicus 81 Selm ENSRNOG00000061231 ENSRNOT00000081123 3 1 1 80 14 83754149 83754480 AGGACATTCAACTGTACCAC 58 83754522 83754541 AATTTCGGCTTAACAACACG 58 NA Rattus norvegicus 81 Zfp366 ENSRNOG00000017249 ENSRNOT00000023180 3 1 1 89 2 29494264 29494282 GTAAGTTCACGCTGAAGGG 59 29494335 29497071 TACCCAGACCTTGAGAGTG 58 NA Rattus norvegicus 81 RGD1559864 ENSRNOG00000000129 ENSRNOT00000000141 3 1 1 82 5 58382448 58382788 GAGTCCAGATTTGTGGATTGG 59 58382832 58382850 ATCGCTCCACTGTTAGGAC 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000076489,ENSRNOT00000027868,ENSRNOT00000082010 1 3 6 82 10 89211527 89212069 CAAATCTAAGGAGTTGCCGT 58 89211464 89211482 AAGCTACCATTGCATGGTC 58 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000076146,ENSRNOT00000082010 2 3 6 85 10 89213319 89215772 CTTCCATATCTGGCACAGC 58 89213252 89213270 CATTCCATTCCACAGGAGC 59 NA Rattus norvegicus 81 AABR07048397.1 ENSRNOG00000038905 ENSRNOT00000022054 3 1 1 92 5 76749153 76749171 GGCACACTTACAGACTGTG 59 76749227 76749246 ATCCACCTCTTCACACGAG 59 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 1 2 2 80 2 153847858 153847876 GGGAACATGGAGAATGCTG 59 153847919 153848789 CAAATCTTCAACCACGTGCT 60 NA Rattus norvegicus 81 Prdx3 ENSRNOG00000010958 ENSRNOT00000015186 3 1 1 80 1 282244500 282246461 GCCAAGAAAGAATGGTGGT 58 282244438 282244457 CCGTAGTCTCGGGATATCTG 59 NA Rattus norvegicus 81 Samt4 ENSRNOG00000024271 ENSRNOT00000029966 1 1 1 68 X 24364227 24364246 TCAAATGGATCTCTTCACCC 57 24362816 24362836 CTCAACTTGAAGATGCATTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Phf3 ENSRNOG00000011756 ENSRNOT00000015638 2 1 1 80 9 37117804 37117824 TTGAGGGACAGAGTAGAAGAC 59 37112229 37117765 ACTTCTTACTTGTTCTTGTGCC 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 3 2 2 80 10 90207224 90207243 GAGGAGATCATGGTTTCCAC 58 90207283 90208573 GGAACTGGTAACAATCTCAGTC 59 NA Rattus norvegicus 81 Cpt1c ENSRNOG00000026163 ENSRNOT00000035908 3 1 1 80 1 100968575 100968594 AGTGTGGCAGGAGATTTACC 60 100967890 100968534 CCAGCAAGAAAGTCATTCCAG 60 NA Rattus norvegicus 81 Akr7a3 ENSRNOG00000017899 ENSRNOT00000024160 2 1 1 81 5 157810073 157812346 TGTACATGGACCGCTACTG 59 157812390 157812409 GGGCCATAGGTAGTCTTCAG 59 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260,ENSRNOT00000020955 2 2 2 80 9 42917469 42917487 CCATCACCATGACTCTGGG 60 42917048 42917427 CAGAAGAACTTGACTTGGCTG 60 NA Rattus norvegicus 81 Edem2 ENSRNOG00000019299 ENSRNOT00000026120 1 1 1 80 3 151239094 151241004 TGGTCTTCAGAGCCTTATTGG 60 151239034 151239054 CCAAACTGCTTCCATACAGTG 60 NA Rattus norvegicus 81 Vwa2 ENSRNOG00000025581 ENSRNOT00000051834 1 1 1 80 1 277727743 277728053 CTATGCAGAGAAGCCAAGC 59 277728096 277728115 GTTCTTCAGGATACAGGTGC 58 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246,ENSRNOT00000009920 1 2 2 80 3 48675214 48683928 GCAACTTAACAGACTTGAATCC 58 48675155 48675174 ACTACGGTGGTTTGTTTCTG 59 NA Rattus norvegicus 81 Mesp1 ENSRNOG00000014951 ENSRNOT00000020117 1 1 1 73 1 141533000 141533018 GGAAAGGCAGGAGATGGAG 60 141532701 141532719 AGGTTTCTAGCAGAGCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Fadd ENSRNOG00000047035 ENSRNOT00000075089 2 1 1 217 1 217748431 217748449 GTAAACGAAAGCTGGAGCG 60 217746542 217746560 CACAATGTCAAATGCCACC 58 NA DesignNoJunction Rattus norvegicus 81 Scoc ENSRNOG00000003853 ENSRNOT00000005124 3 1 1 113 19 24587731 24587749 ATGAATGCTGACATGGACG 58 24585900 24587336 TGCAGAAAGATCTTCAAGTGTG 59 NA Rattus norvegicus 81 Msantd1 ENSRNOG00000010867 ENSRNOT00000014692 1 1 1 84 14 81096836 81096854 CCCAGTGCTCCTATGAAGG 60 81095204 81096790 TCCTCTGACCTGAACTTAAGG 59 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 2 2 2 80 1 219135375 219135394 TGGATGACCTTTGTCATCTC 57 219135129 219135333 ATGACAGTGAAAGCAGTCTG 58 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367,ENSRNOT00000003072,ENSRNOT00000033489 1 3 3 80 14 10907296 10908993 GGACCAGACACTTTCTCCA 59 10909036 10909055 CCTTCAGAGTAGTTCCTCGT 59 NA Rattus norvegicus 81 LOC680639 ENSRNOG00000049248 ENSRNOT00000048123 3 1 1 60 2 34419124 34419142 TCAAGCACTCAAAGAGCAG 58 34419082 34419100 TCCTTCTGATCGTTCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh3a ENSRNOG00000010277 ENSRNOT00000015102 3 1 1 80 8 59172379 59172401 CTAATTCCTGGAGATGGAATTGG 59 59172441 59174425 CTGAATAGGTGCTTTGGCG 59 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064,ENSRNOT00000064184 3 2 2 85 1 101170252 101170271 GGATACTCACACTCCAAGGG 60 101170317 101170700 ACGTTAAACCCAGAGATAGCA 59 NA Rattus norvegicus 81 Acads ENSRNOG00000001177 ENSRNOT00000001556 2 1 1 82 12 47256227 47256245 GGGACTTTGCTGAGAAGGA 59 47256291 47260960 CTTCTTCACCTGCGATGTG 59 NA Rattus norvegicus 81 Cd79b ENSRNOG00000011917 ENSRNOT00000015976 2 1 1 80 10 94498143 94498455 TCTTACTACTAGACAAGGATGACAG 59 94497988 94498008 CTGTCTGGTCAATGTTCAAGC 60 NA Rattus norvegicus 81 Dnaja4 ENSRNOG00000012106 ENSRNOT00000017053 2 1 1 80 8 59285557 59285577 TCACCCATGGATATCTTTGAC 58 59285618 59287782 GTGTACAACATTCTTGCCTC 57 NA Rattus norvegicus 81 Vnn1 ENSRNOG00000016219 ENSRNOT00000021694 3 1 1 80 1 22619575 22620494 TGAGGAGAATGACAGGAAGTG 60 22619515 22619534 TTCCTTCCTGTGTCTTCCTG 59 NA Rattus norvegicus 81 Chrna6 ENSRNOG00000012283 ENSRNOT00000016452 3 1 1 80 16 68865358 68866503 GAAACAAAGGAGGTAGAAGATGAC 60 68866539 68866560 GACGATTATAAACACCCAGAGG 59 NA Rattus norvegicus 81 Hscb ENSRNOG00000037508 ENSRNOT00000056798 2 1 1 80 12 51881323 51881341 TTCAACAAAGGTACCAGCA 57 51881385 51881668 AGAACCGTTTCTCAGTCTG 57 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 3 2 2 80 14 7680810 7680828 CAGCTGTTAAACTTCGCCC 60 7680872 7682194 GTATGCCTGATATGCTGCG 59 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 1 2 2 80 10 59810584 59810602 GGACTATTTCCGAGTCACC 57 59810644 59812794 AGGAAATATTGAATCCCTCGG 58 NA Rattus norvegicus 81 Arid1a ENSRNOG00000006137 ENSRNOT00000009173 2 1 1 80 5 151946598 151947519 TCTTATGCACAGCAGATTCC 58 151946537 151946556 GTTATAGTACGGAGTCTGGC 57 NA Rattus norvegicus 81 RGD1562036 ENSRNOG00000024788 ENSRNOT00000033929 2 1 1 81 5 148433631 148433649 TAGCACCATGAGTTCCACC 59 148433101 148433587 CAGTAGGCTCCTGAGTTGAG 60 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112,ENSRNOT00000082408 2 4 4 80 9 47034323 47034341 CTTGGAGGGACAGTTTGGA 59 47034380 47034875 TTAGTAACCTCGATGGTATCTTCC 60 NA Rattus norvegicus 81 Slc10a5 ENSRNOG00000032426 ENSRNOT00000045438 3 1 1 60 2 93670264 93670282 CTGGGAGTCTGAAGGTAGG 59 93670301 93670324 GCTCACTCTGATATTGGTTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000028020 3 1 2 80 1 203534571 203534591 ACAACATCGAGCAGATTTACC 59 203534633 203534892 TAGTTCCATCATTACTGTGGC 58 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 3 2 3 83 10 89292787 89292805 AGCTGAACGTCTGTCTGTC 60 89292852 89294581 CAGCAATGCCTGACAAGAC 60 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392,ENSRNOT00000079797 3 2 2 82 8 52127709 52127729 CAATAAGAGTGATGACTCCGT 58 52127773 52129347 CCTTCAAAGGCCTGAAGTC 59 NA Rattus norvegicus 81 Wfdc6b ENSRNOG00000031823 ENSRNOT00000048654 1 1 1 80 3 161072287 161076935 GACCTCAACGAAGACATATGC 59 161076976 161076995 TTTGTTATACCACCAGCGTG 59 NA Rattus norvegicus 81 LOC498300 ENSRNOG00000050163 ENSRNOT00000072695 1 1 1 93 13 99369393 99369416 GGCGTGTTCTGTATTTCCT 58 99369473 99369491 CAAGATCACGAGGAACACC 58 NA Rattus norvegicus 81 LOC683684 ENSRNOG00000048516 ENSRNOT00000075757 1 1 1 60 X 20806874 20806893 GCTTGAAAGGGATGTCAGAG 59 20806833 20806852 GCATCGAAGCTGATTCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brd2 ENSRNOG00000000461 ENSRNOT00000080585 1 1 1 80 20 5265172 5265562 TTTACAACAAGCCCACGGA 60 5265606 5265624 GCATCGATGCCACTTTCTG 60 NA InUTR Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268,ENSRNOT00000014147,ENSRNOT00000038549,ENSRNOT00000058727,ENSRNOT00000081522,ENSRNOT00000082355,ENSRNOT00000013991 1 7 7 80 16 64049818 64049836 AACCTGGTGAACATAGCGA 59 64049877 64052071 AGATACGTATTGATTCACCAGC 59 NA Rattus norvegicus 81 LOC100362350 ENSRNOG00000002597 ENSRNOT00000003498 2 1 1 80 7 2419040 2419059 GAGTTGCATTGTTTGGAGGA 59 2415755 2418998 GAATCTCACGTCTTAGCACG 59 NA Rattus norvegicus 81 Tfip11 ENSRNOG00000000663 ENSRNOT00000000828 2 1 1 81 12 50323348 50323366 ACACCCTTCTGTCAAGGAC 59 50321881 50323306 CATGTAGGCACCAACATTAGAG 59 NA Rattus norvegicus 81 Dalrd3 ENSRNOG00000020159 ENSRNOT00000027318 2 1 1 81 8 117356783 117356801 TGTGTCTGAAGGAACTGGT 59 117356844 117356937 AGATCTTCAGTCACCAAACAG 58 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 1 2 2 80 9 44476083 44476106 AATACCTACAGGAGACAGTTACAG 60 44475233 44476048 GAAGGAAGTTATAGAGCTGATGG 59 NA Rattus norvegicus 81 Fxr1 ENSRNOG00000051480 ENSRNOT00000088442 3 1 1 80 2 120534821 120534840 GTGGATAAATCTGGTGTGGT 58 120531518 120534779 TGGAACCATTCCATCTTCTC 57 NA Rattus norvegicus 81 Rps29 ENSRNOG00000028939 ENSRNOT00000041384 2 1 1 60 13 91334124 91334143 AAATACGGGCTGAACATGTG 59 91334166 91334184 TGAAGCCTATGTCCTTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 1 2 2 100 1 101085490 101085508 TTCCAGTACGACCATGAGG 59 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381,ENSRNOT00000010180 2 2 2 80 7 3334512 3334531 TGTCTCTTATCATGCTCGTG 58 3334571 3334683 TACTAAACTCTGACTTCACCTG 57 NA Rattus norvegicus 81 Enoph1 ENSRNOG00000002262 ENSRNOT00000003083 2 1 1 80 14 11176835 11178775 GACATTCTGGAGCTCATCG 58 11176773 11176791 TGCAATCTTCCGGTAACTG 58 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000003251 2 1 2 60 10 76164135 76164700 GCAGATCATTCAGGAGTTGC 59 76164094 76164112 ACCCTCCGTTACCAAAGTG 60 NA DesignRelaxed Rattus norvegicus 81 Asnsd1 ENSRNOG00000003942 ENSRNOT00000059233 2 1 1 80 9 53007361 53007381 GTTTGCATCTAGAGGAATCGG 59 53007421 53007652 GTGAGAATCACCTTTGCACTG 60 NA Rattus norvegicus 81 Tmem115 ENSRNOG00000021899 ENSRNOT00000032263 2 1 1 77 8 116290924 116290942 ATCACTATCAGCCTCCCAG 58 116293659 116293677 CTCATTGAGAGCCTTCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem194b ENSRNOG00000012924 ENSRNOT00000029204 3 1 1 82 9 53722253 53723339 AAAGACCTTGAGCCAAAGC 59 53722189 53722208 GAAGGACAAAGACCAGAGTC 58 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000045573 1 1 2 82 10 59923383 59923402 GTTTCTCAGCAACTTGTCCT 59 59923447 59934372 CTTGGCTCTGCATGTTCTG 59 NA Rattus norvegicus 81 Myo18b ENSRNOG00000048430 ENSRNOT00000070961 2 1 1 80 12 49948014 49976278 CACAGTCCCAGGGTAAGTG 60 49976322 49976340 ATCCCAGTCTCCATGAAGC 59 NA Rattus norvegicus 81 Mtx2 ENSRNOG00000001559 ENSRNOT00000002134 2 1 1 80 3 61811838 61812327 TGACTGCAGAGTTGTATCTCC 60 61812750 61812771 GATAAGGAGACCCATACCTAGC 59 NA Rattus norvegicus 81 Mtx2 ENSRNOG00000001559 ENSRNOT00000002134 3 1 1 80 3 61811837 61812326 CTGACTGCAGAGTTGTATCTC 58 61812750 61812770 ATAAGGAGACCCATACCTAGC 58 NA Rattus norvegicus 81 Rprml ENSRNOG00000028436 ENSRNOT00000033276 3 1 1 64 10 91710980 91710999 AACTTTCTGATGCAGGAACG 59 91711026 91711044 CAGTACAGTCCCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832,ENSRNOT00000090060 3 2 2 80 2 34895715 34895735 TTGAAGAAAGATGCAAGTGCC 60 34816988 34895673 TCTGAGCTCTTCACTTCGG 59 NA Rattus norvegicus 81 LOC100911766 ENSRNOG00000049324 ENSRNOT00000075588 2 1 1 80 1 214033454 214034485 TACTGCTCACTTTCTTTGTGC 59 214034526 214034545 CACTGTAGGCAAAGAAGAGC 59 NA Rattus norvegicus 81 Fiz1 ENSRNOG00000016574 ENSRNOT00000022236 2 1 1 62 1 72382074 72382092 GGATTCCGAGACTCCACTG 60 72385129 72385147 GTAGGGCTTCTCACCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Olr727 ENSRNOG00000047981 ENSRNOT00000043370 1 1 1 65 3 78852654 78852673 ATGACCATATCCACAAAGCA 57 78852790 78852808 CATGTTACCTGCCAGTGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fstl4 ENSRNOG00000006565 ENSRNOT00000067809 3 1 1 80 10 38114629 38155352 CAGACAGAGGAAACCAGAGG 60 38343687 38343705 CTTCCCACAGGAGGATGAC 60 NA Rattus norvegicus 81 Gpr171 ENSRNOG00000025297 ENSRNOT00000036690 2 1 1 81 2 149325883 149325901 CAGAAAGATGGAACCGCTG 59 149321069 149325838 AAACAACCTCAGGGTTGGT 59 NA InUTR Rattus norvegicus 81 Olr57 ENSRNOG00000015407 ENSRNOT00000020655 2 1 1 60 1 167937363 167937381 AATCCTCAGTCCTCTTGGT 58 167937405 167937423 CTCAGTGGGTTACAGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldoc1 ENSRNOG00000003409 ENSRNOT00000004529 2 1 1 60 X 144807703 144807721 GATGCCTTACATCGAGTCC 58 144807745 144807763 CTCATTAACAAAGGCCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000064734 2 1 3 85 20 4918821 4919015 AAACACAGGTGGGAAAGGA 59 4918523 4918541 CTTCACAATCTGCGAGGGA 60 NA Rattus norvegicus 81 Olr68 ENSRNOG00000015649 ENSRNOT00000020953 3 1 1 60 1 168137850 168137874 CCCATTGTGTACTGTATAAAGACTC 59 168137890 168137910 TAACCAACTTTCCCAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnc2 ENSRNOG00000015155 ENSRNOT00000020348 3 1 1 80 3 161244120 161244138 CGAGGAGATCGAATCCCTG 60 161243763 161244079 ATCATCTTCAGAAACTCGTCGA 60 NA Rattus norvegicus 81 RGD1560394 ENSRNOG00000038150 ENSRNOT00000058062 2 1 1 138 14 82054627 82054646 CATTTGAATTCATGCAGCGC 60 82053722 82053740 AATGATCTTCAGCGTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RT1-CE3 ENSRNOG00000031607 ENSRNOT00000050099 1 1 1 95 20 4932632 4932650 TTATTGGAGCTCTGGTGCC 60 4932195 4932397 GAGCTGTCAACTAACCTGGA 60 NA InUTR Rattus norvegicus 81 AABR07055937.1 ENSRNOG00000061704 ENSRNOT00000073630 3 1 1 60 7 16068032 16068052 ATTAAACCATCTGCAAGGGAG 58 16067992 16068013 AAGTATACAGCAAAGCTACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822,ENSRNOT00000091791 2 2 2 80 8 132136633 132136652 GCTTGATCCAATGACATCCT 58 132136692 132139378 TTCAATACAACCTCTACACCAG 58 NA Rattus norvegicus 81 Vom1r57 ENSRNOG00000057670 ENSRNOT00000082786 3 1 1 60 1 66687936 66687954 ACTGTTGTGGCTTCTAGGT 59 66687894 66687912 AGTGATAACGAACCTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hyal1 ENSRNOG00000015858 ENSRNOT00000021408 1 1 1 80 8 116334784 116334933 GTACCAAGGAGTCATGCCA 59 116334977 116334995 CTGCACTGGTTACGTTCAG 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 3 2 2 63 16 47181460 47206991 GCTGGATACTAAATACCCTTATGTG 59 47181421 47181441 CGAATTCTTGTTCATGATGGC 58 NA DesignNoJunction Rattus norvegicus 81 Traip ENSRNOG00000030101 ENSRNOT00000052289 2 1 1 80 8 116742309 116742329 TCAGGCCAAGTTAGAACTGAG 60 116742370 116742781 AGCTTCTTTCTTAGGCTCGT 59 NA Rattus norvegicus 81 Olr83 ENSRNOG00000050132 ENSRNOT00000046793 3 1 1 60 1 168327763 168327782 TCTATGTGGTCATTCCTCCC 59 168327804 168327823 ATCTGCTTTGTTCTCACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mal2 ENSRNOG00000008615 ENSRNOT00000011485 1 1 1 88 7 94131131 94149063 GCCTGGAGATTGTACTTGG 58 94149115 94149133 AAACATGACCCATCCTTGC 58 NA Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 2 1 1 96 16 47718470 47718488 CTACGTGCAGGACTACCTG 60 47718545 47723714 TTCTTGGTATTTGTTGTCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Glra2 ENSRNOG00000003313 ENSRNOT00000004443 1 1 1 80 X 30663451 30663469 GCAGTGAACTTTGTCTCCA 58 30614427 30663410 ATCTTCTTCCTTATTCTGCCTC 58 NA Rattus norvegicus 81 Gatsl3 ENSRNOG00000006740 ENSRNOT00000009150 1 1 1 80 14 84450009 84450108 CAGACTTCATCCTGGTACG 57 84450149 84450170 CTTCACGGTAGATTTGAAACTC 58 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000045130 3 2 3 80 7 66785785 66788364 ATGTCCTCTCCCAAGACAG 58 66788405 66788426 TTCTTCAGTGAGTCAATGAGAG 58 NA Rattus norvegicus 81 Oasl2 ENSRNOG00000028814 ENSRNOT00000001600 2 1 1 80 12 47479416 47480050 TACAATGCCTTGGGATCCT 58 47479354 47479374 GTAGCCCTTACACCTTATCAG 58 NA Rattus norvegicus 81 Tmem42 ENSRNOG00000032027 ENSRNOT00000040475 2 1 1 81 8 132107134 132107155 GCTCAGTTTCTCTATGTCTTCG 59 132107197 132107839 GTAGCCTAAGATGGCCGAG 60 NA Rattus norvegicus 81 RGD1561453 ENSRNOG00000046395 ENSRNOT00000049732 3 1 1 60 1 240777001 240777019 AATGGACATCAACACTGCT 57 240777043 240777061 TAGACCATCGTGGATGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680 2 1 2 94 12 52454506 52454526 CCCAGATGATTGAGAAGAAGC 59 52454582 52456682 ACCTGTGACAAACAACCCA 60 NA Rattus norvegicus 81 LOC100912488 ENSRNOG00000048854 ENSRNOT00000040431 3 1 1 60 8 42323340 42323360 TTACTTCTGTGACATCCCTCC 59 42323381 42323400 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000085049,ENSRNOT00000064830 2 2 2 70 8 61914753 61914771 AGAGATGAGCCAGAAAGCC 60 61914701 61914719 TTCTTCCCTGGCTTCTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fes ENSRNOG00000011683 ENSRNOT00000016032 2 1 1 80 1 142179066 142179086 CAAGCAGGAGTATGTTCTGTC 59 142178632 142179025 CGGTACAGGTTATCTGAGGA 58 NA Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069 2 1 2 84 5 154221697 154221718 TCCTTGAACCCTTCAGATAAGG 60 154219101 154221658 GATCTTCACTGTACTTCATTACCTG 59 NA Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000012342 1 1 2 80 5 154266113 154267290 GACAGAGGCTGAGACTCTG 59 154267334 154267352 CTGTGGATCGAGGATGTCC 60 NA Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000074998 3 1 2 89 5 154266105 154266123 GTTACAGAGACAGAGGCTG 57 154266176 154266410 GAAAGACAGGCCGTATCAG 58 NA InUTR Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 1 2 2 80 10 98324632 98324650 CACCCATTACATGGCAGAG 58 98324352 98324591 GATCCAATACATCTCAGCTTCC 59 NA Rattus norvegicus 81 Asb16 ENSRNOG00000036794 ENSRNOT00000028388 3 1 1 82 10 90224080 90224098 TAACGCCTATCCATGTGTC 57 90224144 90224774 AGAAGGCTTCATGTTCCTG 57 NA Rattus norvegicus 81 LOC100909857 ENSRNOG00000015677 ENSRNOT00000021036 1 1 1 90 5 156721454 156734364 GAGGATCTTCTCTGGGTGC 60 156721382 156721400 TTCAGAGATGGCCTTCTGG 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 2 3 3 85 9 50731018 50733525 TCAGTGGATGACCAAGCTG 60 50733572 50733592 GTGCAACATACAAAGGAAGGT 59 NA Rattus norvegicus 81 Gtf2h2 ENSRNOG00000018230 ENSRNOT00000061183 1 1 1 80 2 30506465 30506625 ATGACCTCATCAAGACCCT 58 30506403 30506422 CAGTACAAACTCGAACCTCC 58 NA Rattus norvegicus 81 LOC100363596 ENSRNOG00000032940 ENSRNOT00000072039 1 1 1 60 1 79573357 79573378 CGCCAAGAAGAAATTTGTTGTC 59 79573399 79573417 TGAACTGCAATGGGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpw ENSRNOG00000042944 ENSRNOT00000065677 3 1 1 81 1 29918026 29918046 AGTCTAGGACAAATGCTTGTG 58 29918087 29919356 TTCAGAATTACCTTTGCTGCC 59 NA Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 3 2 2 80 1 255924878 255927573 AGCAGCTTGGCTATATTGTC 58 255924817 255924838 TTTCTGACTGGATGATGAATCG 59 NA Rattus norvegicus 81 Pygb ENSRNOG00000007583 ENSRNOT00000010157 3 1 1 80 3 146611962 146611980 GACTACATCGAAGCTGTCC 58 146612022 146612815 CTCGAAGAAATTGTCATTGGG 58 NA Rattus norvegicus 81 Zfp865 ENSRNOG00000016279 ENSRNOT00000021917 2 1 1 149 1 72356902 72356920 TTAGGTACAAGATGGCCGC 60 72359148 72359166 CCTGGATCTCGATGAGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dusp4 ENSRNOG00000011921 ENSRNOT00000016328 2 1 1 80 16 61081140 61081979 AATACATAGACGCAGTGAAGGA 59 61081081 61081100 AGATGGTGGCTGATCTAGAG 58 NA Rattus norvegicus 81 Ptpre ENSRNOG00000015717 ENSRNOT00000021359 3 1 1 80 1 207974524 207974543 TGAAGGAGAACATGAGGACG 60 207974582 207976040 TGAAGTCATATGGGATGATCTGG 60 NA Rattus norvegicus 81 Pls1 ENSRNOG00000009945 ENSRNOT00000013209 2 1 1 80 8 103572307 103572327 CGGACAGGACTTAAATGAAGG 59 103571757 103572267 ACTTTCAGCGTGTATCTTCTC 58 NA Rattus norvegicus 81 Pls1 ENSRNOG00000009945 ENSRNOT00000013209 3 1 1 80 8 103572306 103572326 GGACAGGACTTAAATGAAGGG 58 103571756 103572267 AACTTTCAGCGTGTATCTTCTC 59 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 2 2 2 80 5 154312111 154312230 CATTCGTGGAGAAGACTCCA 60 154312271 154312291 ATCTCCTCAAACTCCACAGAG 59 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186,ENSRNOT00000038898 1 2 2 80 1 73398709 73398729 GTTACTATGAGAGTGCTGCTG 59 73398510 73398669 TGGGATTTGTATAGGCTCCTG 59 NA Rattus norvegicus 81 AC107280.1 ENSRNOG00000031401 ENSRNOT00000048808 2 1 1 89 8 117478579 117478599 TGGCTATGATGTTGAAGACC 58 117478509 117478530 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Gpatch3 ENSRNOG00000007097 ENSRNOT00000009394 3 1 1 80 5 151802341 151804366 TACTACGACAAAGATGGTGGAG 60 151804407 151804425 CTGACCTTCACGGAGTCTC 60 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000012086 ENSRNOT00000016098 3 1 1 61 16 70081761 70081784 CGGATGAAAGTTAAGAAACTACCC 60 70081928 70081949 TACTTAAACCTCTTCAGGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb32 ENSRNOG00000042465 ENSRNOT00000063808 2 1 1 86 1 89044575 89044594 AGATATGGCGCTCCTTTCTC 60 89044303 89044526 CAAGGTCAGTGGGATCCTC 60 NA Rattus norvegicus 81 Olr339 ENSRNOG00000012838 ENSRNOT00000017126 3 1 1 60 1 229722891 229722909 GGGAATGGAGGGATGATGG 60 229722933 229722951 AGTACATGGGAGTGTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 1 2 2 80 2 210702789 210702807 TCCCGACTATGACAGAAGC 59 210702440 210702749 TCGATTAAGTAGGGCAGATTAGG 60 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 3 3 3 81 16 54174528 54174547 TTGGAAACTTTGTCCAAAGC 57 54174589 54183974 GTGTAGTCTCCTTGCATAGTC 58 NA Rattus norvegicus 81 Trmt10b ENSRNOG00000012454 ENSRNOT00000016720 3 1 1 80 5 60863981 60864001 AATCCAGGAACACATGATCAG 58 60864040 60864787 ATATCGAACACTTGGTTGATGG 59 NA Rattus norvegicus 81 Pold4 ENSRNOG00000018765 ENSRNOT00000025507 1 1 1 80 1 219482151 219482363 CTTGCACAGGTATCACAAGG 59 219482406 219482424 CTTGGTACACCTCTACGGG 59 NA Rattus norvegicus 81 Eomes ENSRNOG00000042140 ENSRNOT00000013530 3 1 1 80 8 127148949 127150765 CTACGATTCCATGTACACCG 58 127150807 127150826 ACAATCTGGTGGGATCTAGG 59 NA Rattus norvegicus 81 Itga1 ENSRNOG00000053550 ENSRNOT00000086114 1 1 1 80 2 47224617 47224635 TTTCAGTGGCCCAGTAGAG 59 47209405 47224575 CCAATAAGAACCCATTTGCCT 59 NA Rattus norvegicus 81 Epha2 ENSRNOG00000009222 ENSRNOT00000012328 2 1 1 80 5 159866097 159866115 TGCTCAAGTTTACCACCGA 59 159866157 159866273 ATACCTCTCCAAACTCTCCTG 59 NA Rattus norvegicus 81 Blm ENSRNOG00000011213 ENSRNOT00000015065 2 1 1 80 1 142294952 142294974 GGAGTCACTATTGTCATTTCTCC 59 142293204 142294915 AGCTGGAATATCAAAGGAAGTC 58 NA Rattus norvegicus 81 PCOLCE2 ENSRNOG00000046848 ENSRNOT00000074047 2 1 1 82 8 103481971 103483592 AGCAACTTTGTGTTAGCCG 59 103483638 103483656 ATGCTGATGATCGAGACCG 60 NA Rattus norvegicus 81 Olr142 ENSRNOG00000016954 ENSRNOT00000022740 1 1 1 60 1 169229954 169229972 ACCCACTACGCTATTCCAC 59 169229912 169229930 ATACCCAGACCCATAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybphl ENSRNOG00000037082 ENSRNOT00000027099 1 1 1 80 2 211168282 211168488 CTGGTGATTGAGAAGCCAG 58 211168532 211168550 TGTCCATTCCAGAGTAGCA 58 NA Rattus norvegicus 81 Cnksr1 ENSRNOG00000022838 ENSRNOT00000031225 1 1 1 80 5 152448592 152448611 AAGCTTGGAATGACACATCG 59 152448446 152448552 CACTGCTATCTAATGAAGAGCC 59 NA Rattus norvegicus 81 AABR07071258.1 ENSRNOG00000023622 ENSRNOT00000039271 3 1 1 80 8 106869072 106869092 CTCTTATGTCCTTGGCATTGG 59 106866317 106869032 AAGTCTATGTGGAAGAGCTGG 60 NA Rattus norvegicus 81 Zw10 ENSRNOG00000054479 ENSRNOT00000080712 2 1 1 80 8 53376989 53377010 TCAGAAACTGCTTGGTTTACTC 59 53377048 53380297 CCTCTGTGGACTGTATGATCTC 60 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 3 1 1 91 2 52171512 52171534 CACTTACTTCTCTATCGGTTTCC 59 52171321 52171461 TTTCCTCCGCCAATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Kif12 ENSRNOG00000007080 ENSRNOT00000010040 2 1 1 80 5 79002030 79002288 AAGTGCTAAGAGGAGGATCTG 59 79001970 79001988 TCAGGGAGCTGTTGATCTG 59 NA Rattus norvegicus 81 Stk19 ENSRNOG00000048929 ENSRNOT00000072446 2 1 1 179 20 4516992 4517010 GAGAGCGGATCCTCTAAGG 59 4510511 4516678 TCTTGAAGCTCCTTCAGCT 59 NA Rattus norvegicus 81 Olr1341 ENSRNOG00000055356 ENSRNOT00000079438 2 1 1 60 8 44043620 44043641 ATTGGAACTACTTGGTCTCCTG 60 44043661 44043680 GGTAAAGAGGAGTGACCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049043.1 ENSRNOG00000047278 ENSRNOT00000014357 3 1 1 62 5 101510718 101510738 CCATGAACGTTCAAAGAAAGC 59 101510762 101510782 TGTTTATGGTAGAGCTTAGCC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07044933.1 ENSRNOG00000026813 ENSRNOT00000031053 1 1 1 60 20 27129523 27129542 ACGGTTGTGATTTCTTTCCT 58 27129565 27129583 TTGTCTGTCCTCAACACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam221b ENSRNOG00000025453 ENSRNOT00000029035 2 1 1 80 5 59161742 59161762 GTTTGATGATCAGGTGAACGA 59 59157218 59161703 CCAATGTAGATACCTGTCTGGA 59 NA Rattus norvegicus 81 Esm1 ENSRNOG00000010797 ENSRNOT00000014559 1 1 1 80 2 45104818 45108285 GTGTCTGTAAAGACTGTCCCT 60 45108327 45108345 TGTCACATATGCCCGACTG 60 NA Rattus norvegicus 81 Msl3l2 ENSRNOG00000000801 ENSRNOT00000001050 2 1 1 60 20 37588836 37588855 GGAAAGATGTCCTTCTCCGA 59 37588875 37588896 GAAAGAGATCCAAGTGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361793 ENSRNOG00000058151 ENSRNOT00000083064 3 1 1 129 20 11633987 11634005 TACCAGATAGCCTGCTGTG 59 11633876 11633894 CAGATGACTGACAGGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdss2 ENSRNOG00000042962 ENSRNOT00000067169 1 1 1 80 20 48161158 48191950 TGAACTACACTAAGTTGCGG 58 48191993 48192011 TTCCATGGTAACGACACAG 58 NA Rattus norvegicus 81 Ascc3 ENSRNOG00000037604 ENSRNOT00000057016 1 1 1 80 20 55422737 55422847 GGCTCAACATTAAGCAGATGG 60 55422886 55422907 AACCTTGAATGTGAACTTCCAG 59 NA Rattus norvegicus 81 Nek5 ENSRNOG00000048769 ENSRNOT00000058091 2 1 1 80 16 74814779 74816538 TCATTCCAAGAGAACAGCAG 58 74816581 74816599 CTGCCTCTGTATCCTTTCC 57 NA Rattus norvegicus 81 Cd99 ENSRNOG00000050735 ENSRNOT00000073028 3 1 1 90 20 56196903 56196921 GATAACCTTGGCGCTACTC 58 56195757 56196139 CTTCTTGTCAGTGTCCTCC 58 NA Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 1 1 1 63 16 49186079 49186322 ACAGAGTTCCGGGAAACTG 60 49186348 49186367 AGCTCTGAGGTACTGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07045621.1 ENSRNOG00000049150 ENSRNOT00000073994 3 1 1 60 20 53776654 53776672 GGTGGGAATAACAGCTGAC 58 53776612 53776631 ATTAGCTGCCTCATAGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353,ENSRNOT00000086242 1 2 2 80 3 80393059 80394810 GCAAGAGGAAGGTACTAATTGG 59 80394851 80394869 CAGTCCAATAGATGCGCTG 59 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566,ENSRNOT00000012915 3 2 2 86 5 61720958 61724859 ACCTTACAGGCAAGATTCG 58 61720890 61720908 CTTCCATGTAGAGTCGGGT 59 NA Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 2 2 2 92 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697027 74697046 TAGTGGAAACCCACTGACAC 60 NA Rattus norvegicus 81 LOC100911129 ENSRNOG00000045530 ENSRNOT00000041189 3 1 1 60 20 1173214 1173233 AGTGATGTCTTATGACCGCT 59 1173254 1173274 CATGATGACCTCATAGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1694 ENSRNOG00000000747 ENSRNOT00000000974 2 1 1 60 20 847775 847793 CAGGGACTTGGATTAGTGG 57 847733 847751 GCTACAACAGTGAGAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defa5 ENSRNOG00000030093 ENSRNOT00000018501 2 1 1 114 16 75338280 75338816 CAAGATGCAGATGTGAAGGC 60 75338185 75338203 AGCACAGTCTGTAGATGCG 60 NA Rattus norvegicus 81 LOC100910944 ENSRNOG00000019823 ENSRNOT00000026856 1 1 1 82 3 151688511 151688529 AAGATGGGCTTTGTCATGG 58 151688575 151689611 ATTCCGATCCTGAGACAGG 59 NA Rattus norvegicus 81 AABR07044281.1 ENSRNOG00000045959 ENSRNOT00000074812 1 1 1 96 20 969452 969472 GATACATCCCAAGAGGCTG 57 969374 969395 CAACGAGAATTCTGACATAGGA 58 NA Rattus norvegicus 81 LOC100361664 ENSRNOG00000001220 ENSRNOT00000001635 3 1 1 60 20 11626613 11626631 CTCCTGTCAGTCATCTGGG 59 11626571 11626589 GATAGGTTTGCAGACCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 3 2 2 100 16 75146133 75147254 CCTTACCATGAGCCTGGAC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Zmat4 ENSRNOG00000042690 ENSRNOT00000048602 2 1 1 80 16 73076903 73076922 TACAGACAGTTACTGCAAGG 57 73015609 73076862 TGCTTTCGACTCTCATAATGG 58 NA Rattus norvegicus 81 Tmem50a ENSRNOG00000017279 ENSRNOT00000023221 3 1 1 81 5 153246937 153246957 CCAATATGGAGCAATTCAACC 58 153244093 153246897 GATACTGCGTTAATCATGAGGA 58 NA Rattus norvegicus 81 AABR07049064.1 ENSRNOG00000006721 ENSRNOT00000058536 1 1 1 81 5 103079047 103089625 ACAAGAATTGGAGCAGACTG 58 103089669 103089687 TTCTTCATCAACCAGCGTC 58 NA Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 1 1 1 63 16 75465836 75465854 TCTGTCTCCTTTGAAGGCC 59 75465881 75466484 TCCATGGCCATCTGATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 2 1 1 64 16 75465835 75465853 GTCTGTCTCCTTTGAAGGC 58 75465881 75466484 TCCATGGCCATCTGATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 3 1 1 64 16 75465836 75465854 TCTGTCTCCTTTGAAGGCC 59 75465881 75466485 TTCCATGGCCATCTGATCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cyp4v3 ENSRNOG00000042426 ENSRNOT00000019302 2 1 1 80 16 50123094 50124463 TCCGTACAGTGTATAGGATGAG 59 50124501 50124522 TAAGGTACCAAAGGTCAAACCA 60 NA Rattus norvegicus 81 Tmem82 ENSRNOG00000011970 ENSRNOT00000016176 1 1 1 89 5 160171400 160171418 TGGGTATCTTTGTCTCCCT 57 160171085 160171347 GTGGAAAGCCCTGTATCTG 58 NA Rattus norvegicus 81 Fam46b ENSRNOG00000056153 ENSRNOT00000086144 1 1 1 117 5 151692476 151698096 GATTGTACAGGTAGTTCGCAG 59 151698175 151698193 CTTGTAGCCTAGGCCACTC 60 NA Rattus norvegicus 81 LOC102552669 ENSRNOG00000022257 ENSRNOT00000029077 1 1 1 60 5 154976433 154976451 TGGTCAAACAGGAGAACAG 57 154980282 154980300 ATGGTTGTTTCTGCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 AC111257.2 ENSRNOG00000052837 ENSRNOT00000091296 2 1 1 81 16 81010120 81011120 CTAACTACGATGAAGAAGGAGC 59 81010060 81010078 CTCCCTCCTGTGACTACTG 59 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000038809 3 1 3 80 3 150877550 150877680 CTTAACAAGGTCGTCACTCCT 60 150877490 150877510 ATCCAACACCTCAGATTCCTC 60 NA Rattus norvegicus 81 Pla2g2f ENSRNOG00000016798 ENSRNOT00000022559 2 1 1 87 5 157194943 157195758 GATGAGATGGACTGGTGCT 59 157194874 157194892 CATAGTGGTCCACGTAGGG 59 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 1 2 2 80 5 59071989 59072007 GCTACTCCTGCATCATCCA 59 59071746 59071946 GTTACTGTGGTATCTGCCGT 60 NA Rattus norvegicus 81 Dlgap4 ENSRNOG00000020225 ENSRNOT00000037177 1 1 1 80 3 152844909 152844929 TGAAGTTCGATGAGCTCTACC 60 152844968 152845758 TCTTCTCTTCCTTCCTCTTCTC 59 NA Rattus norvegicus 81 AABR07026233.1 ENSRNOG00000038490 ENSRNOT00000058668 3 1 1 90 16 68672123 68673433 AACGATACAATCTCCACAGG 57 68672052 68672070 GTGTTCAGAGGAGATGTGC 58 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316,ENSRNOT00000017106,ENSRNOT00000090646 2 3 3 80 16 74803064 74803083 CTTGCTGTCTATGCTGAAGG 59 74803126 74804945 AAGCCTTCTGTACCTGGTC 59 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 1 1 1 61 16 75400952 75401558 GAGATAGGAAGGCCAGTGAG 59 75401581 75401600 GCATATTCTTTAGGTCCGCA 58 NA DesignNoJunction Rattus norvegicus 81 Defb33 ENSRNOG00000038128 ENSRNOT00000058031 3 1 1 64 16 75581227 75581247 CTCCTTGTATGTCTTGCTCAG 59 75578882 75578901 TCACACTGACGAAATTTCGT 58 NA DesignNoJunction Rattus norvegicus 81 Micu3 ENSRNOG00000012767 ENSRNOT00000017025 2 1 1 80 16 55096001 55100379 CAGATGAGCCCAAATTTGCT 59 55086624 55086643 CTGGTGGAGTTTCTGAAAGC 59 NA Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000080707 1 1 2 80 3 160092977 160110128 ACGAAATTAAACTAGGCCTGAG 59 160110169 160110187 CACAGGAGATGAAGTCCGA 59 NA InUTR Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974,ENSRNOT00000088458 1 2 2 80 16 71202917 71202936 AGTCATCGAGATCCGAAGAG 59 71194129 71202877 CCCTCTCATTTGGTCTATTCTG 58 NA Rattus norvegicus 81 Carkd ENSRNOG00000015021 ENSRNOT00000065043 1 1 1 80 16 83334608 83335573 GCTGTCAAGAGTACACAGG 58 83333941 83333961 AGAATACGTGGGTCAAATCTG 58 NA Rattus norvegicus 81 Defa11 ENSRNOG00000038133 ENSRNOT00000058037 1 1 1 93 16 75517645 75518182 AAGATGCAGATGTGAAGTCAG 59 75517572 75517590 CCATTGTAACCGCATTCCC 59 NA Rattus norvegicus 81 Clp1 ENSRNOG00000007416 ENSRNOT00000009726 3 1 1 80 3 72128102 72128900 TAGTATTTAGGCACAGCAGC 58 72128041 72128059 GTTCAAACTTGGTCGTTGG 58 NA InUTR Rattus norvegicus 81 Defb14 ENSRNOG00000032304 ENSRNOT00000048414 2 1 1 101 16 75648488 75648506 CATCTTGTTCTTGGTGCCT 58 75647750 75647768 CAGTTGAGTATGGCACACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 1 1 1 60 3 150155812 150156763 TTCTCACTTCTAGTGAGTACCA 58 150155773 150155793 AAGTCTCTGTGTCCTGTAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Prrg3 ENSRNOG00000045663 ENSRNOT00000074955 3 1 1 68 16 69961010 69961031 AGAGGTCAAGGAAGTATTTGAG 58 69960578 69960596 ACTGCATTTGGGTATCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 1 2 2 86 16 81113990 81118889 CACAGCAAGTGGTGATTGG 60 81118939 81118957 AGTGAGTGTTGGGAGTGTG 60 NA Rattus norvegicus 81 Olr716 ENSRNOG00000046907 ENSRNOT00000074631 3 1 1 80 3 78621122 78621141 CGATGTACTTCTTCCTTGCC 59 78620822 78621081 AGTCTACAATCAACTTGGGTG 58 NA Rattus norvegicus 81 Phf20 ENSRNOG00000019948 ENSRNOT00000027067 2 1 1 80 3 152338947 152338965 AAGAGTCCACAAGAGACCC 59 152339008 152343779 TGAATCCACAGCAGTAGGAG 59 NA Rattus norvegicus 81 Cldn22 ENSRNOG00000030889 ENSRNOT00000040731 3 1 1 60 16 47535221 47535240 CTGCCTCACAAACTACTTGC 60 47535180 47535198 TTCCATCTCGTTCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963,ENSRNOT00000067508 3 2 2 80 16 81334144 81334165 TTTAAGGAGTCATACATGGCGA 60 81332865 81334105 ATCCAGGAAATTCTTTACGGC 59 NA Rattus norvegicus 81 Mtch2 ENSRNOG00000058658 ENSRNOT00000079709 2 1 1 80 3 79680596 79680614 GAGTCCTTGGAACTGTGGT 59 79683818 79684011 TTGCAGATCCTAAGTCCTCAG 59 NA Rattus norvegicus 81 LOC100362655 ENSRNOG00000045897 ENSRNOT00000018375 1 1 1 73 16 75123021 75123039 CCCTTCAGGTCATGAAGAC 58 75123076 75125450 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Rps28 ENSRNOG00000049442 ENSRNOT00000025380 3 1 1 61 16 71593111 71593129 CATCCGAAACGTCAAAGGC 60 71593154 71593172 TTTCTGACTCCAACAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 2 2 2 80 3 80079254 80079276 GACTTCTCTTCTTCAAGGATGTG 59 80079316 80079437 GGAGCTCATGGAACTTGTC 58 NA Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 3 2 2 80 3 80076616 80076635 GAATTGAGAAGGCCTATGCC 59 80076678 80077298 CATATTGTGGGCCCTTCTC 58 NA Rattus norvegicus 81 Ces2a ENSRNOG00000047669 ENSRNOT00000072935 2 1 1 114 19 37046672 37046691 ATCTTGAAGCCAACTACCTC 57 37046767 37047864 GTGAGGTCAAATTTCATGCC 58 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000038543 3 1 2 89 2 178282778 178296813 CTCAATCACAGTTGGTCGTG 59 178282708 178282726 GACTTGTCTGCCTCTCCTC 60 NA Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 1 2 2 80 15 34237872 34238157 GATGTCTCACTTCTTGCCC 58 34238201 34238219 TCTTTGCTGTAGATGCCAC 58 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578 2 2 3 88 3 3832187 3832441 GAATTTACCCGAAGGAGGC 58 3832117 3832136 ATATTCCAGGCCATATCCCA 58 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669 2 1 3 80 3 3830538 3830930 AACTCAAACAGAAATGGTGAGG 59 3830479 3830498 AGGTCATGGAAGTCACTCTC 59 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581 2 1 2 80 8 64184104 64185699 AACACAAAGGAATGTCCCA 57 64184042 64184060 GTTCTGGTTACGACAGACC 58 NA Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 3 2 2 80 2 143590146 143590166 AGAAAGCTTTGGGACAATTGG 60 143602116 143602243 AGATTCCTCATCACCTCTTGG 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 2 2 2 80 2 57249180 57249198 TTCCACTGCCATTTCATCC 58 57249242 57250111 TGGATCCTAGCAACTTCCA 58 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000085690 3 1 2 81 2 188330318 188339650 CCCATTCATGTTGATGTCTACG 60 188339687 188339710 CATCTGGCTTCTTACAATTACAGG 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 2 2 3 80 2 188404347 188404985 CAGATCCAGGACGACTACC 59 188404285 188404304 TTTGTTGTCCTGGATGTCAG 58 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 3 2 3 86 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657911 42657930 GGGTCTTTATGTGCTTCACC 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000067331 2 1 2 80 5 28092433 28092451 TATCGGAGTTTGAGCTGCA 59 28050116 28092394 CATACGCATAGATCTGAATCACTC 59 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777 1 1 2 97 X 29611076 29611095 ACATCTGCAACACCAATGAG 59 29608193 29609597 CATGTAGATCAGCAGGGCA 60 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000086721 2 1 2 81 X 29639648 29639668 GCTCAAAGAACCATCAGTACC 59 29621492 29639605 CATTCGAAGCAACCTGGAC 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076756,ENSRNOT00000018532 2 2 3 82 1 178394366 178394386 GGAAGGGTGTCAAACATACAG 59 178394428 178401758 TTTCATCATCCACGGTTTCTG 59 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000005061 3 1 2 84 X 35721871 35721890 ATTCTTCTAGCACTGCAAGC 59 35721937 35725011 TTTAGTGGTTGGCTCTGGG 60 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942 3 1 2 107 1 219144479 219173534 TACAAGACTTCACGAGCTGG 60 219173604 219173622 TTCTTGACCACTCCGAGAC 59 NA Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 2 2 2 80 2 46983764 46983784 ACCAATCAGTGGAGGATAGTG 59 46983823 46987451 CCACATCTTTCAAGGTATCCTG 59 NA Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 1 2 2 80 6 50930789 50930808 CCATAGTTGCTAACGGAGAC 58 50930087 50930746 CCATTACACCATCTGTCCC 58 NA Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 3 2 2 80 6 50930950 50931646 AAGATAAGGATCCATGATGACC 58 50930891 50930909 TGTAATCCAGGACACTCCT 57 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161 2 1 5 93 1 87650231 87655732 GTGTTCAAGCAGCTTTGTG 58 87655789 87655807 TGTATAGCGACCTCTGCTC 59 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 3 2 2 83 9 63564834 63564852 ATGCCTTAAAGGAGCTGCT 59 63558401 63564790 TGGATGAAATCATACTCTGGGA 59 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 2 2 2 82 1 101455556 101456354 CTGCAGAGGATGATTGCTG 59 101455492 101455510 CCGTCTGCAAACATGTCAG 60 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 3 2 2 83 1 137961440 137966296 GCTGGGAAAGAAGATGATGAC 59 137966339 137966359 AAGTTCCTCCTCAGGTAAGTC 59 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496 1 1 2 80 1 243386955 243386974 GCGATGGGAATAAAGATTCG 57 243387016 243388127 TTGAAGTTGTCTCATACCCG 58 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000090181 2 1 2 108 1 170395570 170395588 GACGCTAAAGTTGGTGGAG 59 170395091 170395498 AAAGTCCCTGTTGCTTCCA 60 NA Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 1 2 2 80 4 34255977 34255996 CCTGATGGAGAGTTATGTGG 58 34256038 34259241 ACATCTAAAGGTGAACCCTG 57 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 1 2 2 80 18 28039110 28039129 TCCAATAATGAAGAAGGCGT 57 28039171 28042803 AGCATTGATAACCTGAGGAC 57 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000084662 2 1 2 82 2 148765596 148774433 CAGATTTGTCTTAGCTCTGGG 59 148774477 148774495 ATGCGGATGTCTGGATACC 59 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000084662 3 1 2 82 2 148765600 148774438 TTTGTCTTAGCTCTGGGTACAG 60 148774481 148774499 CTCAATGCGGATGTCTGGA 60 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 2 1 2 70 8 91099640 91099660 GCCTCCTCAGATATTCAATGG 58 91160232 91160250 TGCTCTGTGTAAGCTGACC 60 NA DesignNoJunction Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000075193 2 1 2 89 6 60774225 60778773 CTTTCTGCACCTGAGAAAGC 60 60778822 60782109 TACAGAGCTCTTCAATGGAGAC 60 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 2 2 2 80 10 109857059 109857077 CCTAACAATGCCAAGCTGG 59 109857118 109858461 CTGTAATGCAATTCGAACTGTG 59 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 3 2 2 81 10 109857058 109857076 TCCTAACAATGCCAAGCTG 58 109857118 109858461 CTGTAATGCAATTCGAACTGTG 59 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000026251 3 1 2 85 1 100404083 100404212 TCACTGGTTTCTCAGACCC 59 100404259 100404279 CTTCTTAATGGAGGTCTTCCG 58 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000041271 2 1 3 80 5 48285684 48285705 TTCATCTGGAAAGACTATCGCT 59 48285743 48285765 TGTTGTAGGTAATCGTCTTGTG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 2 4 7 83 1 215610468 215610576 ACCTGAAGAGTGTGATGCT 59 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 2 4 7 83 1 215610468 215610576 ACCTGAAGAGTGTGATGCT 59 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 1 3 3 80 4 157246378 157246687 GAACATTCTTCCCTTTGACCA 59 157246318 157246338 GCATTGATGTAATCAGACCCT 58 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 1 2 2 87 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472115 100472133 TGACGGAGGATTTGTACCC 59 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 1 2 2 80 18 28381378 28381398 TTTGGTTTCAGGGAAGATGTG 59 28381439 28382552 TGCCTCTGTTAGGAATCCTC 59 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432 1 1 2 88 4 119915818 119915836 CTTACTTCGAGACCAGTGC 58 119911848 119915767 TTCCGTTTCCTGTTTAAGGG 58 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 2 1 1 133 1 198690904 198690922 GAAACTCAAGAGCCCTGTG 59 198700241 198700259 CATGTTTGGCTAGTGTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 3 2 2 80 8 21951996 21952015 GAGAGTCTGTGGAGAAACCT 59 21950500 21951954 TGTCATCTTCCTGTTCACCT 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000068322 2 1 2 95 1 83966783 83966802 ACTTTGCACTTGAGCACTG 59 83966861 83966880 TTGAAATTCGTCCAGCACAC 60 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000071469 1 1 2 81 17 14520384 14520405 GAAGAAAGTGTCCCATCTTTGG 60 14520447 14520834 TACTCGTCCTGCCATTGTG 60 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672 3 1 2 83 6 1657446 1668263 CAGGAGAAGAACTACCACCA 59 1668308 1668327 CATCTCAGAAATGCTGGTGG 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004577 2 1 2 80 13 80697727 80699826 AGTTTGCTACTACTGTGCG 58 80697665 80697684 CTGTCTCTGTGACAACTTCC 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 1 2 3 80 10 35361925 35361947 TATGTGGTAACTCGCTACTATCG 60 35361982 35363423 CACTGACCAGATATCAACATTCTC 59 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327 1 1 2 80 16 54848535 54848555 AACATCATGTTTACTCCTGCC 59 54848594 54850122 TTCCATTCTCATTGAGTTCTCG 59 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242 2 1 2 80 3 51750102 51751032 TATCAGTCATTCCAGGCCTG 59 51751074 51751093 TGAGGATCATGACGTCAGAG 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166 3 3 4 81 15 51925736 51925754 TGGTAGTGAGAAGACCCTG 58 51920812 51925691 ACAAACTGCAGGGTAACTG 58 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 2 2 2 80 10 40259737 40259755 AAGGAGGAGCTGAAGAAGC 59 40259214 40259695 CTCTTTGAGTGTTCTGAGCTG 59 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 3 2 2 80 10 40257665 40257683 TGCAGGAATTCGGAATCAG 58 40256545 40257621 TCATTGTCTGCAGACTCTG 57 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 1 3 3 80 1 140853878 140854473 GGAGACAAGGAGTTTATGGGT 60 140853818 140853836 GTACTGTGCCTCCAGAGTG 60 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 1 2 2 80 X 44976227 44979110 CTTCCAAGGACATACTAATGAGG 59 44979150 44979168 ATGTCATCAGAGCAGGAGG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464 1 1 2 81 14 85343265 85343654 CTCCCACTGTAGAAGGGAC 59 85339584 85339602 CCATATCCTTGGACAGGCT 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000080684 2 1 4 80 17 43537171 43537190 CTACAAGTGAGCAGTGTGAG 58 43534635 43537130 TGATGGAATTCTGTGCTTTCC 59 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 1 2 2 93 1 31871821 31880988 AAGATCAAAGGGAAGTCCTG 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 3 2 2 80 20 10830405 10830424 TGAGATTGGACTGTGAACAC 58 10820969 10830363 CCAACTTCTCCTTCTTCTCC 58 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078221 2 1 3 81 11 53545558 53562269 TTGCACATTAGTTTCGTGGT 59 53545496 53545515 CCAGAACAGGAGTATAGCCA 59 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076656 1 1 2 80 7 9787154 9826055 GGAAGACATGAAAGAGATTTGC 58 9787095 9787117 GGTAGTCCATCTATCTTCTTTGG 58 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000091101 3 1 2 99 1 88955922 88955942 CAAGAGGCTCTGAGCTGAG 60 88961103 88961122 AGGTGTTGATTCTGTTCCGT 60 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 1 1 1 61 15 18521096 18521114 CGGTCAGAATGATGTGCTC 59 18516928 18516951 CAGAGCTGATGAAGTCATTATGAG 60 NA DesignNoJunction Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 3 2 2 81 2 52310622 52313173 TATCTACCAACAGGCCACG 59 52313218 52313236 TGTCAGATGATGGGACAGG 59 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520 2 1 3 80 1 220857307 220857325 CCATAACCTTCCTGGCTCC 60 220857365 220857627 TCATCTATGTCTACACATTCGGG 60 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056251 3 1 3 106 9 121862805 121862825 CGCTTTATGGTCGATTTACGA 59 121862893 121877756 TGAACTCAGGACCTCTGGA 60 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534 3 1 3 82 9 121901261 121901279 GTAGAACGTCTGGCCAGAG 60 121901324 121902472 AGCATCTCTGGATCCTTTCC 59 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 2 3 3 91 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738156 97738174 GACCATGACATTCAGCTGC 59 NA Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 2 1 1 64 2 54962580 54962598 TGCTCATCTGCTCCATTCC 60 54953379 54953400 CACACTTGGCTGATATAACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000088559 1 1 3 85 2 157873800 157873819 GAAGTTCATCAAGAGGTGGA 57 157869908 157873752 GGTCGTCCTTAGATTTCCC 57 NA Rattus norvegicus 81 LOC100361103 ENSRNOG00000000957 ENSRNOT00000001265 1 1 1 81 12 9997887 9998361 AGACATCAAGGGAATGGGC 60 9997824 9997844 GACATTGTAGACTCTTCCGGT 60 NA Rattus norvegicus 81 Kndc1 ENSRNOG00000027240 ENSRNOT00000034426 3 1 1 80 1 212270037 212270302 GCCATTCCTAAAGTCAGCTC 59 212270343 212270363 TTTGTCCTGGACATAATTGGG 58 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058833 2 1 3 116 X 36969073 36992603 ATCCCTGAAAGATGCTGCT 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000089973 1 1 2 80 4 79895989 79896013 TTACAGAGATACTATTGCTCCTCAG 60 79905297 79906812 TTGACAAACACCTGACGGA 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000076771 1 2 4 80 3 57646488 57646508 CCACCTTTACTCTACAAGGCT 60 57607684 57646446 CCCAAACAGGACCTTTGGA 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000058524 2 1 4 83 3 57572035 57572055 TTGGAAGAATACAGCAGAGGA 59 57570344 57571992 ACAGCCAACCTCTAGTATTCG 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 3 2 4 81 3 57584384 57584403 AAAGAGGAAGAAGACGAAGC 58 57572313 57584343 CAAACTTAACTTGCTCTTCTGG 58 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097 3 1 2 86 11 57458600 57460552 GAACAACAGCACTTTAGAAGC 58 57460600 57460618 TTTCTTTCGAGGCAGAGTG 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000078048 2 1 3 135 5 151072728 151072747 ACATGTATCGGAATCCGGG 59 151061190 151061208 TGCTTAGTTCCAAGTTGGC 58 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000079342 3 1 2 80 1 201067284 201067305 TACCAGGTCTATAAACGTTACC 57 201041945 201067245 GAATCTTGTAAACTGGCTCAC 57 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 2 2 2 91 3 138387917 138389067 TCACACCAAGACCACACTG 60 138387844 138387862 TAAGAGTGTCATGCAGCCA 59 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000080155 3 1 2 174 7 98835950 98849308 AAAGGGAGAGGTGACATCC 59 98834578 98835815 AAATCTCTTCCTCAATCACTGG 58 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 2 2 2 80 4 138701646 138745880 AATGTGGTTGTGAAAGACCC 59 138745921 138745941 AAGAACAATGCTTTCTCCCAC 59 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 3 2 2 80 5 139047415 139047434 AAAGGCAGAGGAAGGTACTC 59 139047474 139062468 TTTGATTTGTACCCTCCTTCGA 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 1 2 9 84 20 2083047 2083514 AGGATCCTGAGGTTTGGTG 59 2082981 2082999 AGAGTGCTTTGCTCTCCTC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000086937 3 1 9 110 20 2083572 2087964 AGCACTTGAATTGGCTTGG 59 2079776 2079796 CCTGGGAGTTGTAATTCTGGT 60 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000064715 2 1 2 84 2 188523981 188526427 CCACCTTCGTAAAGAGATCC 58 188523916 188523934 CATAGCCTCTGCATACCAC 58 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 2 2 4 82 X 54235604 54235622 AATCCGTTACTCCACCTGG 59 54229835 54235560 ATGGGATACCACTTTCAGGAG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355 2 1 4 106 3 63139903 63207749 CAAACAAGAACAAAGGACCGA 59 63139817 63139835 ATCTCACCGTCACTGTTCC 59 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642 1 1 2 86 20 12075277 12075296 GGAGACGCCAGAATATTCTC 58 12075345 12076501 TCTATCAGCCGGTTCTGTC 59 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 3 2 2 81 6 23527230 23527249 CTTAAAGTTACGGGACCAGC 59 23510535 23527186 GGCCATAACCTCTTCACAG 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000050354 3 1 5 103 13 47421968 47421987 AAATTACAGTGTTGGGAGCC 59 47415472 47421903 CATTCTCCACTTCTTGGGTC 58 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 2 2 2 80 1 142422408 142429030 ATACATGGGTTTCTGTGATGG 58 142418649 142418669 AACAGATTCTCTTCCTTCAGC 58 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 1 2 2 85 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494482 42494500 TTCGTACATGTGAGGGCTG 60 NA Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 3 2 2 80 9 11180001 11180020 ACATGAATGATGGGAGGGTG 60 11174730 11179961 ACCCAGATCCATATACTGTGAG 59 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000079291 1 1 2 80 4 182583738 182583756 GCATTCCCTTCAAGACGTG 59 182583009 182583697 GATGAATCATCTTCCCTTGGTG 59 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000078063 3 1 2 87 5 152368111 152368129 TCTTTGGAGGAAGCCAGTG 60 152367304 152368060 TCTCCACGATCTTTCGGAG 59 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102 2 1 2 149 17 48444481 48562772 AAAGGTCCTCCAGAAGCTG 59 48394098 48399200 TCCTGCATACCTTTGATTGC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965 1 1 5 80 X 64273005 64275137 AAACACTCAAGGTGTCAACTC 59 64272945 64272963 TACTGGCCCTGGTTTAACG 60 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 3 2 2 81 3 175930606 175930625 GATGATACGACCGATGAGGA 59 175930669 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000088861 2 1 4 80 7 64825330 64825349 CTTCTGGTCTCAAGCATTGG 59 64825392 64825523 CTGTCAGCTTTCTCCTCGA 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 1 2 2 80 14 108443508 108443527 CTGAAGGAAGCCTACAAGTG 58 108443569 108446264 GAACAAGCTCTTCCCATCAG 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 1 2 2 80 8 70722987 70726653 ACCTGAACAAGACTTCTCTG 57 70726694 70726714 CGTGAGGACTATAAATGAGGG 58 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 3 2 2 89 20 9618387 9618405 CTTTGTGATGGACGAGCAC 59 9618458 9621854 ACCATAAAGCCCTGGAAGG 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017417 2 1 5 131 1 20899193 20916109 CTGAGGGAAAGATTGACGG 58 20897604 20897622 CTGAGATCCCACCTTTCAC 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017417 3 1 5 131 1 20899194 20916110 GCTGAGGGAAAGATTGACG 59 20897605 20897624 TGAGATCCCACCTTTCACAG 60 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000067546 1 1 3 89 2 41442458 41449044 GGCTACATAAAGTTCAAGAGGA 58 41449094 41449112 TATGTACTCCGACACCTGG 58 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000066313 3 1 2 82 17 43500546 43500565 TAATTCCACAATGGCTGGTC 58 43499607 43500100 TTCTCCAATCCAGAAATGCA 58 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283 2 1 2 80 10 90256639 90257007 AGGAGTACGAGGAGATTATGC 59 90256579 90256600 TAGACTTGGTGATACCTTCCTC 59 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263 2 1 2 80 13 99142352 99142370 GACAACCAATCGAGAAGCC 59 99142413 99142986 TGACCAGGAATTGCTTTCTC 58 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445 3 1 2 81 20 12884263 12885545 GCTGAGTCAAGGATGTTCG 59 12884200 12884218 TTTATGGCGTCCATGAAGC 59 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 3 3 3 80 2 264992511 264994599 ATAATCAGTCCAAGGCCCTC 59 264992450 264992470 ACATGTAGTTGGTCAGTACCC 60 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 3 2 3 82 5 57447667 57448325 GTGAGTTGACTGCTGAGGA 59 57447603 57447621 AACGATGACCATGACTGGG 60 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 1 2 3 80 9 10707117 10707515 CAACAGTGAGAAGTACTGTACC 59 10707058 10707077 ACAAAGGTCAGGTTCTTCCA 59 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 1 1 1 68 10 90930297 90930315 TAAGGAAGACCAGGGAGTC 58 90930892 90930910 TGTACGCTGCTATCACCAG 60 NA DesignNoJunction Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 3 2 2 82 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958187 26958205 TTCATTGATCTTCACGCCC 58 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000058663 1 1 2 94 15 51304078 51315383 GCGAAGGTATATGGTTGGAC 59 51315440 51315458 CTTGCAATCAGTGACACCC 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076520,ENSRNOT00000075125 3 2 5 80 15 10267943 10269679 AGAAGTCAGAAGATGATTCAGC 58 10267884 10267902 TCAGACCAAATGATGGTGC 58 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 2 2 2 81 16 19913525 19913645 ACCCATTGATCCAGCTAGC 60 19913462 19913481 GACAGCAGGGTTGACTAGAG 60 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040 1 1 2 80 17 53479768 53483970 CAAGAACTACTGAAGGTGACTG 59 53484011 53484029 GATGTTCAGGCCTCAAGGA 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000000640 2 1 2 137 20 8366502 8366933 TTGTCAGGACTGTGACTGAG 59 8367032 8367524 AGTAGCAGGTATGGAATGGG 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776 2 1 2 151 10 104141804 104141822 CAGGCATCCCTATCCTTCC 59 104140906 104141689 GACCACAGGAGCTAGACAG 59 NA Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 1 2 2 80 7 76229183 76229202 TTCAGCATGTATGACCTGGA 59 76205504 76229142 CATCTTGTAGATTGCCTGCAC 60 NA Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000092024 3 1 2 88 10 82144138 82146405 GAGAAGGAATCTAATGTTGGACG 59 82139445 82139463 CAGAGTAGTAGGGCTTGCA 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299 2 1 2 104 20 19318345 19346719 CCGTGATGGTAACAAATCAC 57 19346784 19346804 ATCTTGAAGGAGTCACATGTG 58 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213 1 1 2 80 X 77529098 77529166 CCTCGAATAAAGGAGCATATACTG 59 77529041 77529062 ATATCTGCTTACTGTCTCCAGC 60 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809 3 2 3 132 17 43665869 43665887 AAGATGGAGTGGGAAGAGC 59 43665983 43666939 CCAAAGTAGGCACTTGCTG 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064395 2 1 4 83 3 111716587 111720126 CTGCTCTTCAAGAAGGTGG 58 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 2 1 1 114 1 11965244 11965262 GGCGGACTTCTTATTTGGG 59 11968502 11968520 TAACCAGACAAATCGCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755 2 1 2 80 8 66884312 66884332 CAGTTTGATCCCATAAAGCCC 59 66881332 66882380 AGATTGTGGGAGTACAGCC 59 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501 2 1 2 92 4 22970354 22970372 AGGAATAATTGCTGGCACC 58 22975179 22980089 GGTAACTGTCTCTGTTCTCG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004921 3 1 2 101 X 104775215 104775234 GAAACACCTTCCTTGGAGAG 58 104765628 104775152 CCACTACTGATCCCTTTCCA 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000078667 2 1 3 82 18 31094090 31094109 GCCTAGTCCTGCATTATGGT 60 31089011 31089255 CTGCCTACATAAATAATGTAGGCTG 60 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 1 2 2 80 10 43542836 43542854 CCAGCAATCTTGAGGAGGA 59 43542898 43544547 GAAACTCTGTGTCCATGGC 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 1 2 4 80 13 76298273 76335763 AAGACATCAGTAAAGGCAACTC 59 76335804 76335822 ATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071 1 1 2 118 10 64751730 64755178 TCAACTTCCAGACTCAGGG 59 64756349 64756368 CATAGGAGGGATTCCAGGAG 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089 1 1 4 148 5 116705258 116705276 AACCACATCAACAGAAGGC 58 116720811 116721036 CCCAATACCATAACTGTGTCTG 59 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 2 2 2 87 17 55127086 55127105 GAACTGCAGTCAGAAGACAC 59 55127155 55128488 ACTTGGTTTCCCTCTCCAG 59 NA Rattus norvegicus 81 Zfp438 ENSRNOG00000028329 ENSRNOT00000033827,ENSRNOT00000086342 3 2 2 87 17 55127084 55127103 GTGAACTGCAGTCAGAAGAC 59 55127153 55128486 TTGGTTTCCCTCTCCAGTG 59 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817 2 1 2 81 10 39690533 39690551 GATCTTTCCGAGACAGGAC 57 39690595 39692200 GACAACAGACTGGATCACTC 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000036233 1 1 5 80 5 101694277 101695199 TAAAGAAATGTTGGCTCCACAG 59 101695333 101695355 GCTCTTTCTGCTTCAATACTCTC 60 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000067162 3 1 3 89 14 86218586 86219917 CGGCATTAAGGAATCTTCCG 59 86217369 86217387 ACCAAGCTCAGGACATCAG 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000005731 1 1 2 103 6 36091061 36091079 AGAATGAGCCTGGGATGAG 59 36091146 36092243 TTCTTGGGATCCCTGAGTG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000083125 1 1 4 80 10 1459112 1459133 CAGTAACAGCATTAACAAGTGG 58 1457972 1459071 AGTCCATGGAATGCATTGC 59 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 3 3 3 81 17 59714733 59714753 TTCAGAAGCTTGATGTGACAC 59 59714796 59727913 GATTCTCGCAACTCATCCC 58 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000058906 3 1 2 84 5 88627240 88627260 AAGACAGAAATGCAGAGACAC 59 88601664 88627096 CGATTTCGGTCTGTTTATGC 58 NA Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 1 2 2 80 X 105268445 105268463 AGAGGCTTAAACAGCTCCA 59 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094 2 1 2 82 9 49901066 49901084 TCTGTGGATTTCTGGACCC 59 49880164 49901022 GTCTACTGCGTAATCTGTCAC 59 NA Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 3 2 2 80 1 84367075 84369905 TGACTATGGCCACTTCTGAG 59 84369948 84369966 TCACAGCATAATTGACGGC 59 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 1 2 2 80 16 20403812 20403831 GAAGATGGTCACTTGCTTCC 59 20403874 20404072 AGGATGAGCTTGACGACAC 60 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645 2 1 2 80 4 136816312 136816331 TCAGTTGTTCAAGTTGGTGG 59 136816372 136816397 CGTTCCTTTGGAAATAGATGC 58 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 2 2 2 81 14 112940145 112945955 CGAGGGCTTAAGGATATTAACC 59 112940085 112940104 GATCATCGTCCAGGAAACAG 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000088988 3 1 3 115 18 56435910 56438187 ACTTGTACGTCAAAGCCCA 60 56438266 56438284 AACTTCTGAGTGAGTGGCC 60 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832 3 1 2 104 10 16027330 16027353 CTCACTCATTGACATAATGAGAGC 60 15998613 16009594 GAAGACTGACCATTAATAAGCAGAG 60 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000080846 3 1 2 80 20 18932170 18932188 CAGACCAGGATCTGAAGGA 58 18932231 18935490 AGTCACAAACTGAAATTGCC 57 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000 2 1 3 80 3 92715023 92715043 CTGAGGTCTTTGGAGAAACTG 59 92712424 92714982 CTCCATCACCTGGTAAGGAG 59 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000090654 1 1 2 96 14 35085619 35087241 CATTTAAAGAGCAAATCCAGCC 59 35085544 35085563 AGAACCATCACAATGATCCC 58 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000003249 1 1 2 85 13 103284209 103287722 TACAACTACCAGGCAGGAC 59 103287771 103287789 TTCAGCTGAAACCCAAAGG 58 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 1 2 2 80 4 175971251 175973366 AGCTTCAGACGTCTTTACCT 59 175971190 175971211 AAGTCTTAGAATGAAGAAGGCG 59 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018340 3 1 2 80 14 81382551 81383176 AGTCGAAGACTAAGCCTCC 59 81380631 81380652 TATGTCCATCCTCTTTAGTCCA 58 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000064942 3 1 2 80 15 85946575 85946595 TGGAAGAAAGCTATACACCAG 58 85943234 85946533 TTCATCTCTTCTCGCTTCC 57 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870 2 1 2 80 9 78334259 78341862 CACATTGCCTCTATAAAGGGTG 59 78334200 78334220 ATGGTCCTTAACATTTGGGTC 58 NA Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 1 1 1 88 15 62521317 62521335 CTGTGAAGGCTCAATTCCC 59 62531545 62531563 GTCAACCTCCATGAAACGC 60 NA DesignNoJunction Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000047303 2 1 3 80 8 49014496 49014517 CTTGAGAGGAGATATCATTCGC 59 49011755 49014458 CAGTTTCTCCATCTCTTTGAGG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183 3 1 2 82 17 63838774 63860386 GTTACCAGGAGATGAGATTAGCA 60 63838714 63838732 GGGAGACGATGAACCTCAG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 2 2 5 80 1 79685410 79685431 ATTCTACACCCTACGAACTCTG 59 79684586 79685369 GAAAGGGAGGTGTTCACCT 59 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 1 2 2 80 19 33334780 33340697 TAGCCAGAGAAGGAAATGAC 57 33334719 33334737 ATTCTCCAGAAGCCAAGTG 57 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 3 2 2 80 19 33334778 33340695 GCCAGAGAAGGAAATGACAG 59 33334717 33334737 ATATTCTCCAGAAGCCAAGTG 58 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000065300 1 1 2 87 3 8947580 8947599 GCTGTCTGATAGCTTCAAGG 59 8948673 8949551 AATCTGGTGCATCAGAAGC 58 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739 1 1 3 80 X 75167500 75167520 CACCAGAGGAAGTATATGCAG 58 75167266 75167459 AACAATCTTTGCTTTGTGGC 58 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809 2 1 3 163 X 75166721 75166827 GATGTAAATGTTGCAAGAGGAG 58 75164481 75164499 GAAGTTCTGTGCTTCACCA 58 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 2 2 2 80 3 148667828 148667947 TATGTTCACCTCATTGCTGAC 59 148667989 148668007 CTTGTCATCACTGTCACGG 59 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466 3 1 2 81 7 143182495 143182514 ATTGTCACCTACAGGAAGCT 59 143180875 143182031 TGCTCACAGATATGTTTACTGG 58 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000083264 1 1 3 80 7 107470601 107474193 ACTACAACAGCAACAAACCT 58 107474233 107474254 ATGTTAAAGGTGCTCTTGACTC 59 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000091144 3 1 2 80 5 99177124 99177144 TTAACCTGGACACTTTGAAGG 58 99177188 99177727 TGAGTTTGCACCTACTGGA 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867 3 1 2 80 11 65076141 65076160 CATCCTTATCCCTCCTCACG 60 65066380 65076099 GCATTAGTATCTGAGGCTGC 59 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252 1 1 2 92 10 83104145 83104169 CTTGTCAAGAGAAGTTAAGGCT 58 83104074 83104092 AAGTATCCAGCTCGTAGCG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 1 2 2 80 9 61022385 61023943 GGAAATCATAAGACAAGCTCCT 58 61022326 61022344 TCCATGTCACCTTGATCCT 58 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 2 2 2 80 9 61022385 61023943 GGAAATCATAAGACAAGCTCCT 58 61022326 61022345 TCCATGTCACCTTGATCCTC 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323 3 1 2 131 2 60952536 60956196 ATTGATGCGAACATGGTGG 59 60956289 60956309 GTAGGTTGTGTAGAAAGGTGC 59 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 1 1 1 60 8 67232095 67232114 TATGGCCTTCGTCCTTTCTG 60 67219113 67219131 TTCTGCTCTTCATCAGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 2 2 2 80 1 89468689 89468707 CAAAGGTTACATGCCTCCA 58 89467512 89467649 GTGGTATTGTCGTAGTAGAAGG 58 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 1 1 2 80 12 11244021 11244039 GAGGCAGTATACAAGCCCT 59 11244080 11245376 TCTTGTTCATCTTCTTCGTTGG 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000039954 1 1 2 81 10 65768660 65768678 CTGTGTAGTGGAAAGCCCT 59 65768721 65768820 CATAGCAATACTCACCTCGGA 60 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000039954 2 1 2 82 10 65768660 65768678 CTGTGTAGTGGAAAGCCCT 59 65768722 65768821 TCATAGCAATACTCACCTCGG 60 NA Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 2 1 1 77 12 18518440 18518458 TAGGAATGCGTGTCATCGT 59 18518697 18518715 CAGACTCCTCCTGGATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266 1 1 2 83 20 9852853 9852871 GTAACAACCGTGGTTGCTG 60 9850976 9852808 ACGTACATTCTGTCTCTTGCA 60 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000015840 3 1 2 95 5 169576690 169580566 ACCCATGGAAGAGACTGTG 59 169576613 169576631 ATGATCTCCATGGAGCTCC 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 1 2 3 82 3 57837674 57840096 ATTCCGATTTGGGACGAGG 60 57840142 57840160 TGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441 3 1 2 92 X 112284399 112290821 GGACCTCTCAGATCTACTACTC 58 112290872 112290892 CATTACCAGGATTAGTAGCCC 58 NA Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 2 2 2 92 8 111213742 111213761 TGTAATGGCTCAGGAGACTG 59 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000025680 2 1 2 82 1 212715877 212804569 GATTGTATGCACAGGTCACG 59 212804614 212804632 GTCCTCGAAGAACCTCCAG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000073502 2 3 5 81 1 257575426 257575444 GAGGAAAGCATTGCCAGTG 60 257575486 257577365 CTCTTCTTGTACTACGCATCAC 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000016087 2 1 4 87 4 85597248 85597268 TAATTTGCATCCTGCTGAGGA 60 85597312 85597482 GACCAGGGTAATAAATAGTTGCAG 60 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000080605 3 1 2 200 1 197909351 197909370 CATGTCCAAACTGGAGTCAC 59 197908967 197909188 GCCCACCCTACATACTTGG 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000044145 3 1 2 96 1 88189743 88189762 ACATCAATGCTCCAGACCTC 60 88189930 88190773 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000018936 1 1 2 80 17 27452112 27452130 GACTGCAGTCTGGATAGGA 58 27449388 27452071 TTCTTTGTCTTCACTGTCTGAG 58 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 1 2 2 80 19 52080996 52081864 GTTATCATTGGCAATGGTCCC 60 52081905 52081924 AGCTCCTGGTTTCACATAGG 60 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 2 2 2 80 13 91732554 91735120 TGAACGTGATGCAAGAGTG 59 91732492 91732510 GGCATCTGATGTCAAAGGA 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388 3 1 6 80 5 48009644 48010597 GATCATCCTCAGGAACCTCC 59 48010640 48010658 AAGGCCACAGGATAGACAG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 3 2 2 81 9 10742950 10742968 GATGACACTGAACCTGAGC 58 10741399 10742908 CTTCAGGATACTGCATAGTGAG 58 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 2 3 3 90 1 88587165 88590623 GAGCTATCTGGAAGATGAAGAG 58 88590672 88590692 CTTCTTGTGGTTGATGATCAC 57 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 3 2 3 89 1 88586427 88587090 CATCTCGGTGGGATTTCAC 58 88587143 88587161 CTTGGGAACATTCGCTCTG 59 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000077307 3 1 2 174 5 171292093 171292111 AAGGTTCATCTGATGGGCT 59 171292635 171294169 CTCATGATTTGAGGCCTCC 58 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 1 2 2 80 X 116785107 116785125 GATGAGAATCGCAACTTGC 58 116781122 116785065 GATTTCAGTCTCCACCTTCTG 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 3 4 4 80 1 262914154 262914175 CCATAGATGATAGACTGAGCTG 58 262914215 262914425 CAAGCATTTCCTCCTTTGTG 58 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505 1 1 3 84 13 76965620 76965638 GAATCACATGCAGCTCAGC 60 76965684 76979442 GGATCTGTTCCAATTGCTCTC 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 1 4 4 85 1 51027230 51048081 TTACTGGTACCTGCAGCTG 59 51048129 51048148 TCTCTGTAGGTGCCATTCAG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 3 4 4 100 1 51027158 51027179 CTAATCACTGTGGAAGATGCTC 59 51027240 51048091 TCTTCTCCTTCAGCTGCAG 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 1 2 3 80 2 195883205 195883225 TCCGGGAGGATATAAGTAGCA 60 195880867 195883167 TTTCTAGTACCACCTGTATCTCC 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 3 2 3 80 2 195883206 195883226 CTCCGGGAGGATATAAGTAGC 59 195880868 195883168 TTCTAGTACCACCTGTATCTCCT 60 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000003689 1 2 5 80 13 78758180 78758201 TATGAGGAAGCCAAGAAATGTG 59 78758242 78759592 ATTCAAGCCCACTCCTCTC 59 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 1 1 1 60 2 156807074 156807092 CAGTTCAGCAACCTCTACG 58 156792535 156792553 GGAGATGATCCCATTGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089091 1 1 3 80 1 149154661 149154681 GACCAATGTGGTTACCATCTG 59 149152269 149154622 GAAATGGCCCATAGTAAAGCTC 60 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000059073 3 1 2 81 6 108024446 108026764 GAAGGAAAGCTAAAGATCAAGGAG 60 108029789 108029809 CTCCTGTCATCATGGATTGGA 60 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 1 1 1 60 1 22431433 22431451 ATCTGCTCTCAGCCTTGTC 60 22431389 22431407 GAGTATGGGCTCCTGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000056047 2 1 2 80 20 27287069 27287089 TACCCATTTGATGTAACCCGT 60 27285644 27287027 CTCCCTCATGGTAAGGCAC 60 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000066549 2 1 2 91 5 151114889 151116530 CGGACACTTGGTTGTTAAGTG 60 151113339 151113357 TCTGAGCACACTTCTTGCA 60 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 2 3 3 80 18 60699945 60702686 ACATGGAGTCTGTGGACAG 59 60702730 60702748 ACATGAGGTCAAGTTCCGT 59 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699 1 1 2 80 10 71418795 71418813 TTGATTCGTTGCTGTCTCG 59 71417663 71418754 CTGCATAATTGTCAAACTCCTC 58 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 2 1 1 118 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104884859 104884877 TCCGCTTTCCTCCTTTACC 59 NA DesignNoJunction Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 1 2 2 80 7 35532158 35535146 AGAGGTACAGGTATGAGCG 58 35535190 35535208 GCTTCAGGTTAGCTGTCTC 58 NA Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 2 1 1 60 3 162034138 162034156 CTACAGGCACCTACAAGCA 59 162033667 162033687 CAACTTGCATATCAGCTCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000041365 1 1 4 80 12 5685266 5685289 TCAATGACCATCACACCCT 59 5685204 5685222 GTATGCACCAGTTTCCACC 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000085650 3 2 3 101 7 104734578 104741508 CGAAAGAAGACTCTCAGAGC 58 104734496 104734514 TCTTCTTCAGCAGAAAGCC 58 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000090240 1 1 4 80 4 15742460 15742479 TTGGTATTGCCAACCTACAG 58 15740481 15742418 GGTTTCTGAATATCTGGCCT 57 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 1 1 1 60 5 169507782 169507803 GAAGATGGAATCATGGATGCTG 60 169510107 169510125 TCACCTTGATCCTCTCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018,ENSRNOT00000084317 3 2 2 80 1 48703308 48703329 GTATTCCAAGCAGATCACTGTC 59 48703367 48705247 ATATTGGCACCTTTGATGTCTC 59 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166 3 1 3 103 10 3321592 3342506 TATCCACCAGGTATGAGCA 58 3356721 3356739 AAAGGCCAGTACATCAGAC 57 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 1 2 2 80 6 18900541 18900561 AATTCCTGCCCATATTGACTC 58 18900603 18912486 TCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 3 2 2 81 10 94359741 94359760 CTACAGTGTGGGAATCACAG 58 94357160 94359697 TAGCAGCATCTGAGTAGCA 58 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000081825 1 1 2 94 5 48314584 48321203 ATGTCTGAGGTTTCTGGGC 60 48321261 48324725 TGGTGAAGTCCATGTCCAC 60 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000016891 2 1 3 80 2 243709553 243709571 TCATCACTGAACTGACGGG 59 243709614 243717321 CTACAGCTGCTTTCAAGGTC 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81636986 81637007 CCACAAGATACTCCAATGAGTC 59 81631868 81636945 TATATGCCGAAGAGACGGA 58 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 1 2 3 91 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038991 100040212 TTGTAAGGTCATGTCTCGAG 57 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000090096 3 1 2 80 8 71670059 71670078 GCAGACCAATACCTCATACC 58 71670120 71677977 GCTGTTAAAGATCTTGGCTG 57 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000001360 3 1 2 92 15 58655212 58655637 ACTTGACAATAGCTCTGGTG 58 58656854 58656873 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000087695 2 1 4 101 20 2505243 2505261 AAACTTCAGAAGTGCCTGG 58 2505325 2509630 CTTCTCTTCCTTGAGTTCCC 58 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000089525 2 1 3 99 3 95715314 95716109 GAATTCTGCAGACCCATGC 59 95716267 95716285 GTCTCGTAATACCTGCCCA 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000036993 1 1 3 80 2 243666912 243666932 CATGATTATGGGCCATGAAGG 59 243666971 243675945 ACTTTATCACCTGTTCTTACGC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 80 4 14177575 14184198 CTCTGACATTTGCAGGTCC 59 14184241 14184260 AGAACAAATCTGTACACGGG 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 1 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133601 100134529 TGGTAATTGTTGCTAGAGCAG 59 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900 2 1 3 81 X 70322902 70322922 GTGTCCAAAGGACTAGAACTC 58 70322964 70323331 CCAAATCTTCATTTCGGCTG 58 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 3 3 3 80 10 84630209 84631880 CCAACTTAACAGTTGCTGCT 59 84630148 84630167 TGGTCCTTCTCTTCACTGAG 59 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000092075 1 1 2 84 20 27975786 27979745 GCGAAATTCAACATGGCCA 60 27979793 27979811 TCACGATCTTCTCAGCAGG 59 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000055034 3 1 2 97 1 196878870 196882161 CCCATGTGGATCTCCTTCC 60 196878791 196878809 CATGAGTCATCAGCAGCTG 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000077175 3 1 3 158 7 141346525 141346543 GACTCACCTAGGGACTTGG 59 141346665 141348669 ATACCGAGTGAAGACCTGG 59 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309 2 1 2 83 10 4553631 4553649 CACTGAAAGCAGTTCCTGG 59 4555663 4556068 CTCCATTTGCAAACACTGGT 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 2 2 2 80 12 12879936 12880165 GGATGAAGTCCATCAAAGCG 59 12879875 12879895 TATTGGCAATCCTCCTCTTCC 60 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000044956 1 1 2 80 8 111840529 111840551 CCACCAGAAATATACAGTGACAC 59 111840131 111840489 TAAGTACCTGTTCCGGCTC 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 3 4 4 82 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 1 4 4 80 7 122238165 122238964 TGACATGAAGGTGGCAGAG 60 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 1 3 3 80 4 155561269 155561288 GTTACTGTTGCCACAATCGG 60 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000088270 1 1 3 80 4 155561307 155623161 CAACAAACAGAACGTGACC 58 155561245 155561263 GTGTTGTAGCCAAACTGGA 58 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 1 2 2 81 2 235852556 235852652 AACTAGGCTGTCTCGAACC 59 235852493 235852511 ACATGCGGATTTAGGTGCT 60 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000082741 3 1 3 81 7 82058596 82058615 TGTATGGATTACAGCCAGTG 57 81992029 82058552 CATAACTAGCTTCAGGCGA 57 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 2 2 2 80 12 16918364 16918488 GCAAACCTATCAGGTCCAG 58 16918530 16918550 AGAAGCGTAAGAAAGTGATGG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000082591 1 1 2 103 1 141655397 141655868 TCCAGAAGAAATTCAACAGCAG 59 141654600 141655334 CACCAATCAAACTTCCACCT 58 NA Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 1 2 2 80 13 95128709 95128730 TCTATGGTGCAGAAATTGTCTC 59 95120871 95128671 AATTCTCCAACTTGAGATCTCG 58 NA Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 3 2 2 80 13 95208262 95208281 TCAGATGTCTTCAGTGGACC 59 95196386 95208223 CTTCTGTCCATTCTTCTCTTTCC 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 1 2 2 80 2 226696193 226696682 ACAAGAATGAGGCATGGCT 60 226696131 226696151 GGTTTATGTCACTGCTGTGTC 60 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 3 2 2 80 16 21070984 21071003 AGAATTCATGGATTGGCCTG 58 21071045 21073376 TCTCATATTGCAGTCCTGTG 57 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748 2 1 2 80 2 27286830 27290852 TGCTGTGAACAATATGAACCG 59 27286770 27286790 CTCAGTAAGAAATCCACTGCG 59 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000091159 3 1 2 97 6 27410706 27411255 ACTGGAACACCACAGTCAG 60 27411315 27411334 TTCCATGCTCACTACAACCT 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 2 4 6 115 19 33932967 33965639 ATGTGTTTAAGCTGTTGGCG 60 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000064050 2 1 4 86 1 215349784 215349802 TTCAGGATGTGGGTCTTCC 59 215329876 215329894 GAGGAACAGCAAGGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 1 2 2 80 17 78775619 78775641 GACTATGAGTCTGATGAGTTCAC 59 78775679 78778108 TGGGTCACAACTATGATTCAC 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000091772 2 1 3 85 10 13321048 13321154 GCTTCAAATGGGAAAGAGAC 57 13320982 13321001 ACCATCATCACCATCATCAC 58 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 1 3 4 80 18 6777410 6777429 GATGTTACTGGTTCCGTTGC 60 6776914 6777369 GGCTCCGGTATAATTGATTGC 60 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910,ENSRNOT00000083511 2 2 3 80 1 247291657 247291675 TCTTAAGCTCCTGCAGGTC 59 247291719 247295976 ACTGACTTCTGCATCCCTC 59 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 3 3 3 81 20 3149177 3149685 GAAGAAGGCAGGTGAAAGAG 59 3149851 3149870 CCACAACAATCCTGCAAGAG 60 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 1 2 2 80 10 85944823 85945566 GAATGCTGAGTTTGTCATCCT 59 85944763 85944782 ATCTTATACAGCTCCTCCCG 59 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057 1 1 2 97 19 45073441 45074098 ATAGAATTACGCTCACCCAC 58 45074158 45074176 TTGTCATTGAAGTGGGTGG 58 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 2 2 2 80 8 115570264 115570283 TTGGAACAAGTCAAGCAGTC 59 115570326 115573291 TGAGCATGCCTTGTATGGA 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 81 8 72486351 72592911 CTGTTGGCCTATGTTTCTGG 59 72486289 72486307 CCAAGGCATTAGACAGGGT 59 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 2 3 3 80 11 67635525 67635545 AGGAACACTGACTTGAAGAGG 60 67635586 67637690 TCTGTAAGACTGGGTTGGAG 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000030352 3 1 2 80 4 22619751 22619772 CTTTGGATATGTCAACCTGGAG 59 22619362 22619715 GAATTAGACCTGTAAACAACCCAG 60 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 2 3 3 80 15 23830046 23840165 AGTGGTATGAAAGATGTTCCAG 58 23840203 23840224 GTAAGTCATCTGTGAGAAGAGC 59 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 1 3 3 68 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82175284 82175302 TGACTCCCATACACAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000028570 3 1 2 81 1 101724669 101741340 TCCGAACTTAGCCAGAAGC 60 101724606 101724625 TCTCTGGTGTATACATGCCG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 1 4 8 86 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217603 8223846 TTATCCAAACTCCTGGGCT 58 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 2 3 4 86 2 250224121 250224140 AACATGATAGACCCACAGCT 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 3 1 1 78 7 123088766 123088784 GAGCTTGATCTACACCGGT 59 123088704 123088723 CCGATAGCTTCTCTTAAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000091561 3 1 6 89 17 77185128 77185149 CCTTCGTGGAGATAGGATGAC 60 77189045 77189063 ATGGAGTCTGTCCTTGTGG 59 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000006143 2 1 2 80 6 115609367 115609388 GTTGATTCTGGACTCAGAGG 58 115609306 115609324 GTGACACTGACTTCCTCCT 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000050733 3 1 4 80 12 783324 786747 CCTTGTAAGGTCTGAGTTGGA 60 786784 786807 TCCATACCTAATTTCTCTTCTGGG 60 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152 1 1 2 81 4 81238590 81238608 GTGGAGGACCTGGATATGG 59 81238326 81238548 CCACTTCCATAATTTCCTCCTC 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000087118 1 1 2 80 10 10861039 10881764 GAAGTCCGGAAACTACTTTGC 60 10860979 10860999 AAGAGGTAACCTTCAGGATGG 59 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000082027 2 1 2 140 6 111180312 111180590 CAAGCCTGTTCTCTATTCCT 57 111181826 111182326 TGAAATTCCTCGGAGAACTG 58 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000083055 2 1 2 143 1 163114614 163114634 GAATTACTCAGCTCTGAAGCG 59 163103735 163114509 CAGATATCCTGCAGAGGCC 60 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000075512 1 1 2 80 11 82696368 82696387 GACAGATTAGATCCCAGCGA 59 82698795 82698892 ATGACACTTACTGTAGCCCA 59 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345 1 1 2 82 5 160124243 160129232 GTTACCGTTGTGAGGACTG 58 160124179 160124197 GAAGAGGTGGTCATTCAGC 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 1 6 7 80 1 102915771 102920319 TTTACTGAAGGGTCTGGCT 58 102920363 102920381 AGAAGATCCAGTGCCTCTC 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000087857 2 1 3 131 19 52671145 52671163 AACTGGATTGGTGAGGCTC 60 52675786 52675807 TCTCATCCACTCTGGTTTCTG 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000040762 2 1 10 81 7 117258798 117258816 GTGGGTCATGTTGTCAGTC 59 117253871 117258754 CTCGTTCATCTTGCTCATCC 59 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 2 2 2 80 1 73262719 73263406 TCCTATGTCTTGTGATCTGCC 60 73252061 73252081 TTGTTGCAGTGGATATGATGG 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000077962 3 2 3 173 1 260552342 260553753 AGAGCATCAGGAAAGAGCC 60 260552187 260552205 ACTCTTTGAAGTGCAGCAC 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 1 5 5 80 8 73059919 73059938 GACACCACCATTATGTTTGC 58 73058143 73059876 AATGTTCTCCCTGTGATCG 57 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000045400 1 1 4 107 5 141074654 141076136 CAGTCTGCTCAGTATGGTG 58 141074528 141074546 TACTTCAGCAGGGATCAGG 59 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109 1 1 4 80 5 141057088 141057877 CTATGCCCGGAATTGAAGG 58 141057026 141057045 TTTGTGATTCATCCAACGCA 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000087458 3 1 3 97 9 65702280 65706049 AGTCTCAGCTCTGGTTTCC 59 65702201 65702219 CTCAGTCTGTAGGACGCAG 60 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025354 3 1 2 80 18 56078568 56078587 GGCTGTTGTTTGAAATGAGC 59 56078627 56079535 GGCACTTGGTCAATACTTTAGG 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 1 4 5 80 9 43834355 43834373 AGTATCCAGCCAGGAAAGG 59 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000080600 2 1 2 87 2 251024407 251026061 GCTAGAGAAGATGAGAGGCC 60 251026111 251026129 GAGTCTCTGTTCGGCTGAG 60 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 1 2 2 80 16 2365908 2365929 CTAGAGAAACTGGCTTTGAACC 59 2364347 2365872 CTGAAGAACTGAAATCTGAAGGAC 60 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 2 2 2 80 2 102726667 102726685 ATTGTTCAGGAGAGGCAGG 59 102726140 102726624 CAAGCCAAGATGATGTGCTC 60 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 1 2 2 80 20 13113953 13114979 GAAGATGATTGTCGAGGTCAG 59 13115020 13115039 GCTTCTTTGGACTTGAGCAG 60 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 1 3 3 80 11 71361920 71362390 CCATGAAGATGGTGACAGAG 58 71361859 71361878 CCAAGAGGAAATGACCTTGG 59 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 3 2 2 83 14 21490739 21552672 TTATAGCATGCTTCCAGTCAG 58 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000088239 2 1 7 80 9 43709430 43717181 GGATATTCAGGATGAAGACGTG 59 43717222 43717240 AGCTCCTGTACCTTCTCCA 60 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571 2 1 2 96 7 34781312 34789228 CTGTGTCAGATGGAGATGG 57 34780833 34780851 GGAGGGTCTGTTTGAACTC 58 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 3 2 2 89 6 26574212 26581278 CTGGATACTATAATGGCATGGT 58 26581327 26581346 GCTTTAAGGAGCCATCAGAG 59 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629 3 1 4 87 16 23448584 23448602 AGCACATTCCCAGAGTGTC 60 23448652 23487945 TCCATGATCACTAGCATCCG 60 NA Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 2 2 2 113 1 90952694 90953343 AAGCCTCAGGACAAGAAGAG 60 90952508 90952526 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 2 1 1 60 15 28415132 28415150 AGTACCAGGAGCTACAGGA 59 28415497 28415517 TCATTCTCCAAACCAGAAACC 59 NA DesignNoJunction Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 1 2 3 91 13 83085515 83085533 TACTTCGAGTCAGTGCTGG 59 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 1 2 2 80 2 243429718 243431340 GGTCAACTGGAAGGATATTCAC 59 243431380 243431399 GACGTCAGATAAACCAGGTC 58 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000035722 3 2 4 80 4 85701162 85703849 AACTATCCACCATTACTCTACGG 60 85703886 85703907 CGAATACTGTGTAGTGGATTCC 59 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 2 2 2 80 1 220929919 220931397 AAGATGAAGGTGACCTTGGG 60 220929858 220929878 CTGGTAGGTGAAGGACTTCTG 60 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000048900 2 1 2 104 19 43163689 43164288 CCATTGTGCAAGCCTTGAG 60 43164356 43166169 CCATTCTCTGCATGTTGGC 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 2 2 2 81 3 5121017 5121038 GATGTCCAGAAAGTTGTAAGTG 57 5122313 5122996 CAAGAACATCATTCCTAATGGG 57 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860 1 1 3 80 3 117430305 117436112 GGGAATTGGTCTGGGAGTC 60 117436150 117436174 CAAATAGCAGACATAGAGATACCTG 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185 3 1 2 83 5 163024027 163026158 CATGCTTTGGACAAAGCCT 59 163023962 163023982 CATAGATCTGGTGCTCTAGGT 59 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000024872 3 1 2 80 17 77605027 77605046 AAAGTACTTCAAGCGGAGTG 58 77605089 77607630 TTTGGCTGTACCTTGTAGC 58 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382 3 1 2 81 18 77272032 77272053 CCATAACTTTCTGCAAGACTCC 59 77251052 77251071 TTTCGCTTCCATCTCCCAG 60 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 2 2 3 80 7 71065581 71069218 GAGTTGGGAACAGAGGACTC 60 71069260 71069279 TGTTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000004753 3 1 2 95 10 46579433 46582805 CATTTGAAGACATGCTTCAGC 59 46579358 46579376 CTGTGTCTCCTGTCTCACC 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 2 1 2 109 2 166669302 166669322 TACATCAGATCATTCCGAGGA 58 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000025070 3 1 2 106 4 118871038 118874567 CTGTACAGAACAGGCAAAGAC 59 118874632 118874653 GCAAAGTAATATTCAACCGCCT 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144 3 1 2 112 3 103753414 103753433 GCCTATGAGTGAACTGTCTG 58 103753508 103806658 AGTTCTGATTCGGGTCCTC 59 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 2 2 2 80 2 196511843 196511863 GTATGAAGACATCCTCAGCCT 59 196510767 196511803 TCACAGCACCCATATTAGGAC 60 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000055103 1 1 2 80 1 188316052 188316070 TCATGGACTTCGTGTTCTC 57 188319077 188319097 TGCTGATGACTTTCATCCC 58 NA Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 3 1 1 231 5 166870239 166870259 CCATGCTTTCTGAAGTCACAG 60 166871459 166871478 GGTAGATCTCCTCCAAGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000005467 2 1 2 81 13 94832770 94832793 GTACCTCATTCTGCTATTTCTGAC 59 94832710 94832732 GGTAAGTGGAGTCTCCATGAG 60 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925,ENSRNOT00000033672 2 2 3 80 4 85289295 85289501 CATCCAGTACAGGAAGGCA 59 85289233 85289254 TTGACAAAGAAGAGCATGTAGG 59 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 3 2 2 80 1 142963146 142965386 AGATCCAGGTCTTCCTGAG 58 142965430 142965448 AGGCAAAGACATCCTTCAC 58 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391 1 1 2 81 14 20481094 20488295 ACGACGATGAGAAAGATCCT 59 20481032 20481050 AAACCCAGTGACTCAAGGA 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 2 2 7 89 2 186122532 186122552 CAGCACTTTAATAATGCGCTC 58 186117950 186119088 TCTAGAGCCGTGTTCATGG 59 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 2 2 2 80 1 199292871 199292960 CTGAAGATCACCAATGCTGG 59 199293003 199293021 CACAAACACCTCACTCTGC 59 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 1 2 2 80 20 12339793 12339811 AAGACCTCGATCACACTCG 59 12335603 12339751 CATGAAGTAGATGCGGAACTG 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 1 2 2 80 3 54548464 54548485 AATCGCAACAATCCTTAAGGAG 59 54547290 54548427 GCTTTCAAATCCCTATGGATCTG 60 NA Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 2 2 2 80 15 28634548 28634566 CATTGATGAAGCCCATCGG 59 28633500 28634504 ACTTTATGCTCCAGGTCCA 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317 2 1 3 80 8 111770121 111770140 CCTGAAACCTATCATGGCAG 59 111768494 111770080 GTTTGAGGATCAGCGATACTG 59 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000057798 2 1 2 96 10 48438207 48438225 TGTGAAGAGGAGGTTGCTG 60 48438285 48443974 GACAGAGACCATGGAGCTG 60 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 1 1 2 65 8 11997797 11997818 GGAAATAGTTAACCTTGGTCCC 59 12160149 12160167 AGAAATGAGCTGTCAGGGA 58 NA DesignNoJunction Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000008160 3 1 2 84 7 142645202 142650185 CAAACACGCTAGTGCAGAG 59 142650232 142650251 CCAGATGAGGAAAGTGTTGG 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000012129 2 1 5 112 3 2264962 2264980 ACCCTTTCAGCTTCCAGAC 60 2266825 2267929 CTGTAGGTCACTGCTCTGG 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000091945 1 1 6 175 20 3437180 3437577 GCATTCAACAAATCCAAAGGTG 59 3436894 3437048 CCTTATAGATCTCCTCCACAGTC 59 NA InUTR Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797 2 1 3 94 18 65172793 65285330 CGGGCTCAAATGTAGAAGAC 59 65288766 65288784 ATAGGGAGTCCCATCTCCA 59 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866 2 1 2 80 2 114413623 114423582 CAGAAGACAAGATCACCGG 58 114423625 114423644 CGATGTCATATCCGAACTGG 58 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000037115 2 1 3 80 2 174342086 174347591 AGCTTCAAGATGTCAAGACTC 58 174342026 174342046 GATTTCGAAAGCTTGGAATCC 58 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000037115 1 2 3 80 2 174336897 174336916 TGGAGAATGATGTTGCACAG 59 174335447 174336859 GTTGGTTATCTCTATCATAGGCAC 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 1 2 3 80 12 10781290 10782192 GATTCTAAGCATAAGCACCGA 58 10781230 10781249 ATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 3 2 3 80 12 10781289 10782191 ATTCTAAGCATAAGCACCGAG 58 10781229 10781249 TATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000048175 3 1 3 82 14 28659356 28659374 TACGTGTGGAACAACTACC 57 28536238 28659310 CCTGTGGTAGAAATCCCTG 57 NA Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 2 2 2 104 4 157515290 157515975 TCTTCAAGTTCTGCTGGGA 59 157516043 157516061 GAGACAGGTCTGTCAGTGG 59 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 2 2 2 147 10 34945761 34945871 AATCTGGATGGCCAGAAGG 60 34945982 34947860 AGAAGGCTGCAATCTTCCT 59 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 1 2 2 80 7 120214413 120214725 CAGATCCATACCAAGGATGCT 60 120214767 120214785 CCTGAGAGCCTCAATCCAG 60 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000010739 3 1 2 90 6 126645255 126645274 GATTTCCAGGAGATGGTGTG 58 126645327 126647033 CAGGTAATCTGGTGACTGC 58 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562 2 1 2 93 10 51696409 51696428 ATTACTTCCTGGCTTCCTCC 59 51693132 51696353 AAACCAGTCATCTGTGCAC 58 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 2 2 2 80 10 11856988 11861850 GAACGGTTTGAAGAAGCTGAG 60 11856928 11856948 ACTCTTGAGCAGTCTCTTCTC 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000078577 3 1 2 99 10 11874600 11877428 CCTCCGCAATTTCACAGAG 59 11874519 11874537 CACTTCAGAGACAAGCCCA 60 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000010455 1 1 2 107 2 189889990 189891970 GAATCGGTGGTAGAGGTCG 60 189889901 189889919 TCAATACAGGGCGAGTGAG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000022331 3 1 4 90 1 200658081 200692395 TTAGAACCAGAAGGAGCACC 60 200658010 200658028 GGAACTTCACAGTGTTGGC 59 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 3 2 2 80 18 74473249 74473269 AGTAAACTCTTCATGCCTGTC 58 74471901 74473208 AAGAGACTTCAACAGCTCCA 59 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100 3 1 2 80 16 32386433 32386453 AAGTGGAAGAATTCCTACAGC 58 32371273 32386393 TTGCCAGATAAACCACATGTC 59 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 2 2 2 80 3 55981119 55981138 GAAGAGTCCTCCTAAAGCTG 57 55981180 55983141 GAGTTAGGTGGGTTACACTC 57 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 2 3 3 80 1 273945314 273945335 AGGACCACATCATAATCATCCC 60 273945371 273946207 CTATTATGTTGACCTTCACCAGAG 59 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 3 3 3 80 1 273946274 273946293 CAATCTATTCAACCCGTCCC 59 273946336 273946831 ACTTCATGGAAGACACAGC 58 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000084281 3 1 3 80 4 100281083 100281104 GTGGAACAATCACTCCTATCTG 59 100281145 100281682 TCAGGGTACCAGTAGTGGT 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000091735,ENSRNOT00000079738,ENSRNOT00000080419 2 5 12 116 20 3352397 3352416 CTCACAATGAGGTAGAACCC 58 3352495 3352681 GTTCCACTCGCTCTTTCTG 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316 2 1 3 80 11 84399530 84425173 CGGAAGATCATTGGAATGCC 60 84425215 84425234 GAATGCACAGAGATGTCCAG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 2 2 3 82 14 25791727 25791745 TCCACCTCTTGTGTCTGTG 59 25791791 25859220 ACTGGAGAAGGAGTTGTGC 60 NA Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 3 2 2 80 19 56026712 56027324 TATGGCATTGTGTATCGAGC 58 56027367 56027385 TTTCTCTTTGTCCATCCGC 58 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 2 2 3 80 11 80933954 80967275 CCTAATGAACTCTCAGTTAGTCAC 59 80933897 80933920 CATACAATTAGGATTCCTTCGGTG 60 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000056457 3 1 3 83 9 111173234 111173252 TCTGGTTATTCCTGTGCTG 57 111173299 111176751 CTTCCCTTTCCTCCAAAGG 58 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000038264 1 1 2 80 13 103318980 103319001 ATTAATTGAAGAAGGGAAGGCC 59 103319039 103321131 TGTAGATTCTTCTCAACAGGCT 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 2 2 2 84 2 208556342 208556360 CTCCTCATCAAGAGCTGCA 60 208555763 208556046 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023 2 1 2 80 9 74225138 74225156 TCCTAAAGGCAATGCTGTC 58 74225200 74231680 TTGGACGGAATGATTGCTG 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828,ENSRNOT00000087156 2 2 3 80 10 55177 55946 TCATGTGTTGCAGATTCTTGG 59 55988 56006 TGAGTAAAGCGCTTCACCT 59 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 1 1 1 60 3 11588003 11588021 CTACTACACCACTTGGGTG 57 11589167 11589185 CTTGTGGATGACATGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000065431 2 1 2 80 19 57103753 57106514 CTTTGCCCGTATTCAGAGC 59 57106556 57106576 TAGACGTTGTCTAGGTACCAC 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000078131 3 1 5 81 11 81426437 81426455 TGTACATGAGACCTTGGGA 58 81424310 81426394 GGCCTAGAAATCATTCCTACC 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949 1 1 5 86 11 81423619 81423643 CATGATGATTTGATCCCTGATATCC 60 81423547 81423575 GTGGGAAGTTGTGTCTGGA 60 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000081403 2 1 3 115 20 3309953 3309971 TTCGGAGGACTCGTAACTG 59 3310050 3315197 CCAGTTCCTCAAAGAACCG 59 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 2 2 2 120 7 11436251 11436269 TTGCGAGAAGGTGATTCAG 58 11433454 11436167 CTTCAGCTTGTCCTGTCTG 58 NA Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 2 2 2 80 5 169553005 169553025 GATGCTACTTCAGAAGATGCT 58 169553067 169554076 AACATCTTGGTCATCTGGG 57 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000079539 1 1 2 80 19 43838820 43839355 GAAGTAAGGCCTATTCCACG 58 43838759 43838777 TAAGCTCCTCCTTGGTCTC 58 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 3 2 2 69 8 21480223 21480242 AACATATCCAACGGGATGCA 60 21479597 21479615 ATTGTGTCCCGTCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097 3 1 2 102 15 57133806 57133829 CTATTTGGAGATCAGAGAAAGCAG 59 57133408 57133745 CAAGCTGCTAGCCTTTCTC 59 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 2 2 2 80 3 2644809 2644930 GGATGAATTGTATTGGGTGC 57 2644971 2644991 TTACCATGAGTGTTGTACCTC 58 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000042606 1 1 2 81 15 61886543 61887571 GAGATTCAGAATGTTAAGGGTTCTC 60 61887608 61887628 AGTACTGAACCAGCTCTACAG 59 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000064250 1 1 2 94 18 61261684 61308859 CAAGGTTCACAAGAACATCTG 58 61308915 61308933 TCTGGTATGTCAAACGCTG 58 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 1 1 1 64 12 23760207 23760225 TACCATACGGTTCACCACG 60 23760367 23760385 CTACTAGCCTCAGCCTACC 58 NA DesignNoJunction Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 3 1 1 67 12 23760204 23760223 GGATACCATACGGTTCACCA 59 23760367 23760385 CTACTAGCCTCAGCCTACC 58 NA DesignNoJunction Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728 1 1 2 80 10 72171427 72175224 TAAACCTTTGGGTGAAGGG 57 72171365 72171385 CTGTGGTCTTCACTACTTCTC 58 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000021196 2 1 2 129 7 126444029 126465674 CTACGTGAAGCTCAGAGCA 60 126443918 126443936 GATCACGATGATGGCATCG 59 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000045766 1 1 3 80 9 73427943 73429556 GCCAAGGAAGATTTACTTACAG 57 73429597 73429615 TAAAGGCTCAGCGAATGAG 58 NA Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 1 2 2 80 6 132104700 132105485 TAAATGACAGTCTCTGCACCA 60 132105525 132105545 GTCCCGCAAGATACATTACTG 59 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 1 2 2 102 7 125265537 125265555 GGACAAGCTCAACCTTGTG 59 125266016 125271097 ATCTGCAAACTGGGTCTCC 60 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000080834 1 1 2 80 11 73155900 73158036 TGCATTACAGGATTTCTCCAG 58 73158078 73158096 TACCCTTCCATGACAATGC 58 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350 2 1 2 81 3 148422370 148422389 GCACTTCAAAGAATGTGTCC 58 148421244 148422326 TATACCTGCAAAGCAGTGC 58 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 1 2 2 85 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404203 108417989 TGATCATTCCTCCCTGCTG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000007187 3 1 4 81 10 18942464 18942483 TTTAAACTCATCACCGGGAC 58 18574679 18579601 GATCATCCTCGATCTTGTCTC 58 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634 1 1 2 80 4 161642548 161642566 ATAAGAAAGGCATGGACCG 58 161641685 161642507 GAAGAAATATCTTGCGGTTCTC 58 NA Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 3 1 1 83 9 98113382 98113400 CTAAGCTTGGTCCTCCCAG 60 98114097 98114116 CCAGGCAGGATTGATATCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 2 2 3 80 19 10186440 10186459 ATCTACCTCCTGGACATCAC 58 10186496 10188532 CTCCTTCTTATCTGTAATGATGTCC 59 NA Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 3 2 2 80 4 6297917 6298026 GACCTTTGGGAAGAACAATCG 60 6297857 6297876 CCCTTCTGATCCATCTGGTC 60 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000018097 3 1 2 114 9 73943533 73947761 CAGATTGCCGAATTCAAGGAG 60 73943439 73943457 CATTTGTGGGATTGGTGCC 60 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000084760 1 1 2 80 1 281828657 281828676 AGTCAACACCATTTCAGGTC 58 281825478 281828614 GAACCCATTCTGGTCTGAG 58 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 1 2 2 133 5 169296482 169300942 GGAGGAAGGAAGAAGAGGA 58 169294257 169294275 GATTTCCTCCAGCTTCTGC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669 3 1 4 80 1 63845583 64009573 GACCAACTTCACACTGTCAG 59 64009615 64009634 TACGTTGACCAACACATCAG 58 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000085395 3 1 2 86 1 170269959 170270651 ATTTCCTACCTCATGGGTCC 59 170270700 170270718 AGATGAGTCCATAGGCCAC 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310 3 1 2 96 8 5676736 5676754 AGAAGATGCTGGCATGGAG 60 5677666 5679635 GGAGGAAATTTGGTGAAGCAG 60 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 2 3 3 81 1 198230548 198230566 ACCAGAAGGCAGATGATGG 60 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 1 3 3 81 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230021 198230507 CCTTATCTACCTTAATGCCCAC 58 NA Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 2 1 1 60 12 24723503 24723521 AAAGACAGCCATGCTACTG 58 24723299 24723317 TACGACAACCAGTCGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000078956 1 1 2 80 4 100765965 100767015 TGGATCCTATAGCTGCAGAG 59 100765904 100765922 GGCCTGAAGAGTTAAGCTG 58 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529 2 1 2 80 6 135231661 135232645 CTCACTAAGTTCAAACAGTCG 57 135231601 135231621 GGTTGTCAGTAGAGGTATTCC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021226 2 1 5 83 1 259479450 259481604 GTACTCCCTCCAGACATGG 59 259479385 259479403 CTCCCTGTAGGAAGACGAG 59 NA Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857 3 1 2 97 1 141666727 141666746 GACAGACAATATCATGGCCC 59 141665887 141666667 CTCAATCGTCCCATTCCTC 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989 2 1 2 93 3 172387980 172387998 TAAGAAACGCAGCAAGCTC 59 172388055 172424548 CTCTCCAGCACCTAGAAGC 60 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296 1 1 2 87 16 7068516 7068534 AAGTATCGAGACACGCTGG 60 7068585 7070212 CTGGTGTGATACCTGGAGG 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215 2 1 3 80 4 161731675 161731695 TCCACTAATCTTCTGAAGCTG 58 161731226 161731633 TCACAAACAATCCACACCC 58 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 3 4 4 81 1 250693684 250697776 CCTGTTTATCAAGGAGTATTCCC 59 250693625 250693643 GAAGATTCCAACGACGCTG 59 NA Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 2 1 1 71 7 144624135 144624153 CGAATGAATTCGCACAGTG 58 144624912 144624931 GTACCGAGAGTAGATCTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 3 1 1 72 7 144624133 144624151 AGCGAATGAATTCGCACAG 59 144624912 144624930 TACCGAGAGTAGATCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 2 2 2 125 18 2425170 2425192 GGCTTTATATGAAACTCCATGGG 60 2426448 2426553 GAACAGAGCTGTTACCGGA 59 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 1 2 2 80 10 88466149 88468272 GGATGAAGATCTCATCAAAGGC 59 88468311 88468331 TCCAGGTAGTTGATTCCAGTC 59 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 2 2 3 80 6 28518403 28518422 AAACGCTACTGTGAGAAGAG 58 28518464 28521609 GACTTGGACCTTTGTGACTC 59 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685 2 1 2 82 6 135274883 135278852 ACCCTACAGAATGGTGAGC 59 135278898 135278916 CTCAGAAGAGCTGAGGGAC 59 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 3 3 3 80 18 70713730 70713751 TCATTCTGGTTATCCAACACCT 60 70713790 70716119 GTTCTGTGTCATGAAACCCTC 59 NA Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504 3 1 2 69 7 144066337 144066355 CAAGCATCATAAGCACGGG 59 144067944 144067962 GTCAGAGTCACTGCTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 3 2 2 80 18 2064995 2065014 GTTATACTGCCTTGCACCTG 59 2065056 2065465 AGTTTGCATTTCCCTGATGC 60 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478 3 1 2 82 10 108639165 108639183 AGAGGTACCTTTCCTGGTG 58 108639229 108639429 CATCCACAAGAAGGACCTG 58 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 1 2 2 80 18 3208563 3208660 GTGATGTGAAGGGTATTGGG 58 3208703 3208721 CTGATGCAAGCTCACATCC 59 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467 1 1 2 80 15 4155176 4156890 GACAGTGAAGACTCAGGGAG 60 4156932 4156951 TTTGTAGGGATAGCTCTCCG 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189 2 1 3 91 12 25447470 25450283 TAACATTCAAGCAGGCCCT 59 25452053 25452071 CTTCTGAGGAGTGATGGCT 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 2 5 7 80 15 34691481 34691911 GCTACTGGTAAGGGAGACTC 59 34691420 34691440 AGTACACAAGCGATAACTGAC 58 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 1 3 3 80 18 73272160 73272181 CATTCTTTCTGGAAGCATTGAG 58 73272220 73274062 CATCATCCCTGCAATCATCTC 59 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 2 1 1 60 4 56450463 56450481 TCTGCCTCAATCAAGACCA 59 56444902 56444920 CTGGGTCAGAAGTGGAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000029634 1 2 3 80 8 13875650 13875670 AACCACATCTAGATCTTGACC 57 13875196 13875609 AAGATTCTGAGTTCTGCTGG 58 NA Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 1 2 2 80 X 134777159 134777179 GCTTAATGACACCCAATACTG 57 134777220 134777481 TCTATTGTCTCGTTTGGCTC 58 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 1 2 2 80 7 130168807 130168911 CCTGGAAGCAGTTTGTAATGAG 60 130168748 130168766 ACTCCCATGACAGGTAGGT 60 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000077245 3 1 2 81 4 155534952 155534973 CTCACCAAGACAGAAGATGC 59 155535016 155535035 GTACCTTTGCCTCTGAAACC 59 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000079549 3 1 3 80 13 113836294 113837448 CTCCTATAGCTTCATGTGTTGC 59 113836235 113836254 TCATTTGCAACCCTTTCTGG 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058 2 1 2 80 3 1547540 1547559 CCTACTCTATCAACGGGCTC 60 1547214 1547498 TGTCCTGGTCACTATCATCC 59 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 2 2 2 66 5 157503970 157503989 CTTTGTGGCCAACATAGCTC 60 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000091578 1 1 2 80 2 198997768 198997791 ACAAGGCAGGAGAATGAGG 59 198997834 198997853 CTCCACCACTCTGTCATAGG 59 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 2 2 2 87 12 25016401 25016419 GTTCCTGGTGGAGTAGCAG 60 25016559 25016731 CTCCACCAAGACCGTACTG 60 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 1 2 3 102 9 118843850 118920880 CCAGTACCTACAGGTTCCC 59 118920946 118920964 TTTGATGTAGCTGCCACTG 58 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681 1 1 2 80 1 276306833 276306852 ATTGTAAAGTCTGCCAAGCG 59 276305410 276306794 GGTCCATCTTCATTACACATCTG 59 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000016133 3 1 2 80 10 66304363 66305346 GAGAGTGGTGACTACTGGG 59 66305388 66305408 GATGTCCAGGAAGTAGGTGAG 60 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 3 2 2 80 15 34297863 34297883 ATATCCTAGAGCACCTACACC 58 34297922 34298325 GAAGAAGCAAGCTAGGTAAGTC 59 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 3 3 3 80 X 77287180 77290476 CTACTCCTACTGTAGCACCC 59 77287119 77287138 ATCTTTGGCTTGTCACTGAC 59 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984 1 2 4 80 7 78462381 78482265 ATTCGAAGTATCGCTCAGGA 59 78482307 78482326 CACTTACATCACTGTCCGAG 58 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000046025 2 1 2 183 1 189262340 189262358 GAGCACATATGGACGAGGA 59 189262767 189264566 AACGCCTTTACCACCTCTC 60 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380 2 1 2 80 1 189236871 189236892 AGAAGCAGACTAGAGTCTTTGG 60 189236931 189237877 GACAGAAACAAAGTTCAGCGT 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000077435,ENSRNOT00000089010 1 2 5 136 6 80235455 80237538 AAGCACAAAGTTTGGAGGC 59 80237637 80246044 ATCAGCCATCAACTCATCCT 59 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 3 1 1 63 18 75203861 75203879 GAGTCCTCGATGACTCCAG 59 75127334 75127352 TGTGTACTGTCGTCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914 3 1 2 81 7 31792312 31795024 CCAACAAGCTTGAGTCTACTG 59 31795066 31795085 ACTTCCTGTTCAAACTGGGT 60 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010929 1 1 2 82 7 31792250 31792268 CCGGTTACTGCAAACAGAG 59 31792312 31802343 CGCATTTCTGATACTTGTTGG 58 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000035323 1 1 2 97 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858665 47861255 GCTTAAATGCTTCACGACG 58 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 1 2 2 80 20 46755060 46755079 TTGATACCTCAATGCTGCGA 60 46755118 46756236 CGTAGTCATAGTCATCGTATCGT 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004236 1 1 6 80 10 53735719 53735738 CAGGCTTCAAGATTTGGTGG 60 53735781 53737895 GATTGTTCCTCAGCCTCCT 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 3 2 6 128 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800564 53848211 GATTGTTCCTCAGCCTCCT 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 2 2 3 80 2 123348670 123348688 AAATGCAGGAGGAGAAGAC 57 123345081 123348628 CTGAGTGAAGAGGTTTAACCT 57 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028237,ENSRNOT00000092008 2 2 7 96 1 83711765 83711783 CTGTGTTCACCATCCACCT 60 83711843 83711910 CTGAACTCCTCAGCTTGGT 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042 2 1 2 91 4 123542904 123542965 ATGGAAGTGTGAGCAGGAC 60 123542831 123542849 CTCTATTCCTCTCCCGTGC 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575 1 1 2 80 11 72805387 72806223 TAACTTCATTAGGCAGGAACAG 58 72805328 72805346 CGGAATAGATCTGCAAGGG 58 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 1 2 2 80 4 57561514 57561534 GCAAACATGAGGTTACAATCC 58 57560184 57561474 CTTCATATGGTGTTCCTTGTG 57 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586 2 1 2 80 12 31235292 31235310 CTCTCCCACAATGCTACCT 59 31233300 31235250 CCCTTCCATGATATCTACGGT 59 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 1 2 2 80 4 57830765 57832746 GCTTCACTAAGTAAAGCAAGC 58 57832788 57832806 CAGCACTAGTGAGGAATCC 57 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788 1 1 2 130 6 137213057 137213076 AGATCTGTGGATGGAAAGGC 60 137213169 137214215 TCATCGTCGGCATAGTCTG 59 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788 2 1 2 132 6 137213055 137213075 TGAGATCTGTGGATGGAAAGG 60 137213169 137214215 TCATCGTCGGCATAGTCTG 59 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000023555 2 1 2 80 1 198000980 198000998 GCAGTTCAGATGACACCAG 59 198001040 198001606 GGTACCCACAATAATCTCCAG 58 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000052396 3 1 3 80 2 261396523 261396545 AGTACGTTAAGGAGAGCTAGG 59 261396461 261396479 AGGCTGTTTCATTGGAGGA 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 1 2 2 123 8 72743431 72743537 TCTGGCTAGAGATCTATTACACC 59 72743619 72744252 AATCTTGTAGCAACCTGGAC 58 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 2 3 3 82 5 59497113 59498121 ATACTACCAGGAGAGCAATGG 59 59498164 59498183 TACTTTCAGGCTCTGACTGC 60 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059 3 1 2 82 4 57745770 57758319 TTCTTGAGAGGCCACAGAC 59 57758362 57758383 CCTCCAAACACATAGAGATTGG 59 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000065280 3 1 2 83 5 128839323 128839343 GGACTGCTCTCCTACTATACG 59 128796477 128813585 AATCACAGCTCCTCTGAGTC 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000084432 3 1 2 98 10 59868427 59871369 TCCTAATCTGCAGGATCAAGAC 60 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000049917 1 1 3 84 14 773161 773183 GAATAGTGAAGAGACTGATGGAG 58 768109 773122 GTAAGAGTGTTCAATAGGTTCCTC 59 NA Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 1 1 1 61 4 163095330 163095348 CACCACCGGTTAACATTCG 59 163094810 163094829 ACACCAATTACCAGGATCCA 59 NA DesignNoJunction Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001 1 1 2 81 4 56813518 56814031 GAAGATGAAGAGCTCCAGAG 58 56814248 56814266 AATAGGGTGCTATGGGAGG 58 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855 3 1 2 81 8 17485240 17485514 GGTCTACAGAGCCTGACAG 59 17485177 17485195 CCAGTCGTAGGGTCAATCC 60 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977 2 1 2 108 12 30808176 30808194 TACCAGCTGTCTGAAGAGG 58 30807474 30808104 ATTCTTCCTCTTGCCTTGC 58 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977 3 1 2 108 12 30808174 30808192 CCAGCTGTCTGAAGAGGAG 60 30807472 30808104 GTATTCTTCCTCTTGCCTTGC 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 1 4 4 104 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831507 215831525 CAGTATGTCTCCAGGAGGG 59 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000084882 3 1 2 139 1 80339419 80339570 GAAGGGTTACCCTCGATCC 59 80336777 80338366 GTAGATGGCAACTTGTGACC 59 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000080379 2 1 2 83 3 123072608 123073064 CCTTCATTGATCCATACAGGC 59 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801 2 1 2 83 3 123072605 123073064 CATCCTTCATTGATGGCTACC 59 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 3 2 2 80 16 24981004 24982624 GAAGGAAAGATTGAAGACGGAG 59 24983634 24983653 TCCAGATGACTGTGAAACCA 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000067251,ENSRNOT00000068116 1 2 5 117 11 78241994 78242012 ACATGAATGGACTCAGCCC 60 78237921 78241913 TGCCAAATCCTGACAATGC 59 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 1 2 2 82 19 951728 951746 TTGGACATCAGCTCTGAGG 59 949935 951682 CACTCCTCATAGCCTGGTG 60 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497 2 1 3 81 11 11516602 11516620 TACGTTTGTGTTGCAAGGA 58 11213803 11516558 AGTCATCTCGCAATAATGCT 58 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000057216 2 1 2 81 5 128881531 128881866 CAAAGCATAAATCCCTTCTCC 57 128881906 128881927 GGAATTTACCGTAATCTGACTG 57 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 3 1 2 103 6 139293144 139293162 CAGCTTGGGTTTCCTTGTC 59 139293339 139293357 AGAGTTTCAGGGACCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 1 2 2 80 17 10360833 10360853 ACAACAATGTCAAAGCCTACC 59 10358783 10360792 CACAGCAAGACCAGTATTCC 59 NA Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 3 2 2 80 17 10357828 10357846 AGTTTGAGAAGTGGCTCCA 59 10357689 10357784 TGCCACATATCTGGAGGAG 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000071522 3 1 2 95 7 117678302 117678321 GTAAGCCTCGCAATATCACG 59 117678048 117678144 ATACACTGGAGCCATGGTC 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000047964 1 1 8 80 1 226468246 226480828 AACTTGTCCAAGTTGCCTG 59 226480872 226480890 GTCAGACTCATCATGTGGC 58 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 1 2 2 80 10 104555270 104557234 CAGATGACACTGAGCACCT 59 104557277 104557296 CAGTCATCCTATGCAGGGAG 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000081601 3 1 2 82 14 66955374 66958022 GTTTGTCTGCAGTGGTCAC 59 66955310 66955329 TGTTGCTACAGGTACAAGCA 60 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000090923 1 1 2 102 18 24744553 24744802 ATGTGATTGAGGGTGACGT 59 24744866 24745410 AACTTGTTCTTCAGAGTGAGC 59 NA Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 3 2 2 80 10 15702571 15702591 TTTCAGGATTGACTGTCACTG 58 15702633 15702737 TCAGTCACCTGGTTACTGG 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158 3 2 3 87 5 122029450 122029468 CTGACAAACCTTCACGGAG 59 122037699 122100766 ATGATTCTTCTTGCAGGCTG 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000083674 2 1 4 80 17 34709853 34720928 ATTGAAATTGAGAACCCTGGAC 59 34720968 34720987 TTGGTAGCTGAGGTTACCTG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 3 2 3 83 5 167992676 167992694 CTCACGAAGTAGGCTTTGG 58 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893 3 1 2 80 6 146816376 146825794 GCATGTTCATAGTCTTTACTGC 58 146816317 146816335 TGGAATATTCAGGAGCCCA 58 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 3 3 3 84 4 162166134 162166152 ACTGGACATTCAGCCAGAC 60 162166197 162166788 TTTAGGAAATTCAGCTCCTCCT 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 3 2 4 95 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583966 4584134 ACACCATTCACTCCTCTGG 59 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 3 2 2 81 1 48029792 48029814 GAGAAGTCAGATAGAAAGCATGC 60 48029427 48029752 TATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079108 3 3 5 82 3 8582484 8584234 CAACATCCAGAGCAAGCAC 60 8584279 8584298 CAATAACTCCACGGATTCGG 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888 1 1 3 80 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492977 134494130 ACCTTGAAACTGCTTGTGC 59 NA Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 3 1 1 60 1 198528644 198528662 CCGAAGACAGTGAAATCCA 58 198529103 198529121 TTGGCTTATTGAGCATGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922 3 1 2 80 1 98518784 98519004 TCTGTGCTGTATCCACCAG 59 98518623 98518641 GCCATTCCTGAGGATTTCC 58 NA Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 2 1 1 60 1 97714797 97714815 GGTCTCCAACTCCACACTC 60 97716749 97716767 TGACAATCCCAGGGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000057502 1 1 2 86 11 89254501 89254521 CAGTGAAAGCAACTGACTCTC 59 89253810 89254453 TTGCTAATGGCAGGGTCTC 60 NA Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 3 2 2 80 5 168026919 168026940 TTCATCATTCTCTGGTTCTCTG 58 168026981 168035550 CGCCTTCTTAAATGGTTGC 58 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858 3 1 3 80 1 48051105 48051126 TTTAAGCAGAACATCCATAGCC 59 48051165 48052072 TCTCACCTTCTTCCAGATGTC 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 3 2 4 84 10 23664289 23664970 CAGCAATGGGATAAGGACC 58 23675997 23676016 TTGGCCTTCATACACTATGG 57 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027593 3 1 3 81 10 15461981 15463369 TTCACATCAGCAGGAATGTC 58 15461919 15461938 CTGCTCTGAAACCATAGCTC 59 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 2 2 2 83 2 95021079 95025899 ACGGGAACTTACTAAGGTGG 59 95025945 95025963 TTGATCTCCGCAAGATGCT 60 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 3 2 2 83 2 95021080 95025900 CGGGAACTTACTAAGGTGGA 59 95025946 95025964 CTTGATCTCCGCAAGATGC 59 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153 1 1 2 84 13 60595516 60595534 TGGCCATTGTATCTGACAG 57 60595582 60596664 GTATCCATGGGTTCCTCTG 57 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357 1 1 2 80 3 118633302 118635206 AGACAAACAAGAAACTGCCA 58 118633241 118633261 GTTATCACAAACACAGCATCC 58 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000080340 1 1 2 83 5 147133881 147133899 TTTCCTGGCTTAGAGGGAG 58 147131973 147133335 AGCAGGGTGATAGAAAGGG 59 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151 2 1 2 81 5 147133168 147133869 TTTGAAGAGATGGCCTCAG 57 147133104 147133122 GCTCAGCAAGGATATCCAC 58 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000009666 2 1 2 92 6 76188204 76196120 CGACTCTACCAAGTAGAATATGC 59 76196172 76196190 GACAATAACTGCGCAGTCC 59 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 3 1 1 60 10 70303600 70303618 TGGATGACAGAAACCAACC 58 70304900 70304923 TATTCATCCTGGAGATCATCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000005479 3 1 3 80 10 11075544 11075565 GGAAGATCTTTGGAGAGTTCTC 58 11071821 11075503 TGATGGTTTCCTCCTGAGG 59 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140 1 1 2 103 2 203386766 203386784 CTGAGTGGCAGCAATATGG 59 203376809 203386699 AGAGAACGTGGACTCTGAG 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000079719 2 1 3 103 6 51297218 51316869 AGTGCTGACTGTATGTGCA 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415 2 1 3 100 6 51356149 51356167 GTAAGGGTGTCAACTTCGC 59 51333961 51356086 TATAACTGGAGCGTTGAACG 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 2 3 7 92 20 4095964 4095982 GAAGATGAGTGGAGTCGGG 60 4096038 4096452 CCAGACTGTCCTTTCTGGT 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 2 3 3 80 5 134206570 134206590 ACTATGTGAAGGTGGTTCTGG 60 134205114 134205839 GGAGCAAACCATAACCAATCC 60 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000037097 2 1 2 80 5 152629971 152629990 GACCCTTATGAAGGTCAGGA 59 152630032 152633713 ATAGTCCTCCTTCAGGTCGA 60 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000080623 3 1 2 157 6 135751558 135751576 ATCCGACCAACTTCAACCA 59 135750896 135750919 ATAGGGCTTGTTCCTGGAG 59 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 1 2 2 80 12 39590266 39590986 ATTACAATGAGGCGAAGGG 58 39591030 39591048 TCATCTTCTCTACCAGGCA 57 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 2 2 2 80 12 39587623 39587645 GGTTGTACTTCTGTTATCTGCTC 59 39587683 39589329 CAGAATGAACATCCTGCAGAC 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287 1 1 3 97 18 25209468 25210987 AAGAAGAACAGTGACAGCG 58 25211047 25211066 TGGTTCACTCTGATCTCAGG 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 1 3 3 80 13 56616865 56616883 ACCCTGTCTGAAGTGTCTG 59 56616922 56618537 CATCCCTTTAGATTCTCTTCTCAC 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 2 3 3 80 13 56603687 56604287 CTGCAGGAAAGAACAAGAGAC 59 56604326 56604347 ACTTTGAATGTCCTCTGTATCG 58 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 2 2 2 80 20 33283841 33283862 GAAGTACTTAGTAGACGAAGCA 58 33282644 33283803 TGAGTGTTGACTGATATTCCTG 58 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675 1 1 2 88 4 65132767 65132787 CATGACATCGATTGTCGCA 59 65134266 65134286 CATCCTTTAACAAGGGTGGAG 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 3 3 3 80 7 12665244 12665343 AAGTTCTTCCAGAAGGACCG 60 12665183 12665201 CAGCTCAATTAGTGCCTGC 59 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 2 2 2 80 4 168616028 168616047 CAGTACTTGGAGGAGTTGGT 59 168616088 168618069 CCACTGCTTGTACATTTCCAG 60 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 1 2 2 81 3 152631148 152631166 ATGGACTTGAGCTATGCCC 60 152631211 152635247 ACTGGAGTTCACCAAGGAC 59 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 3 2 3 81 12 36695273 36734422 CAGGTGCTCAAGAATGTCC 59 36734466 36734485 ACAAGTAGAAGGGAACAGGG 59 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 2 1 1 60 7 122456929 122456948 AGGATAATCTCACATTGCCG 58 122458234 122458254 ATGTTGATGTAGGAGACACTC 57 NA DesignNoJunction Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000087883 1 1 2 88 4 155655110 155661803 AGACTGTCAGGAACCTGGA 60 155661855 155661873 CTCTGAGAGTCAGCTGTGG 60 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 1 2 2 80 17 9625117 9626019 ACTTCAAGAGGTTCTGTTTGG 59 9626061 9626079 TCTTGAGGCTGAAGTTGGT 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 3 2 2 80 12 40526508 40527397 TGATGGATAAGGCAGTGGT 58 40527441 40527459 CTTTGAGGTCCTGGATCCT 58 NA Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 3 2 2 80 6 133578068 133578539 GACAATGTCTGCAGGTGTG 59 133578583 133578601 TCCATTAACACAGCCAGGG 60 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 2 2 2 80 10 90379805 90379824 TCCTGATGGCTACTCTTGTC 59 90379864 90380007 TCATCACAAGATACACCCTCAG 60 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845 2 1 2 82 6 144118112 144123337 ATGCCGAAAGAGAAGAACC 58 144117051 144117069 GACTACCTGATTGTGCAGC 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717 1 1 2 80 18 63882702 63882722 GAGAAACTGCTGGTGACTG 59 64015851 64015869 GACAATGATGAGGACCTGC 58 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 1 2 2 80 12 40435418 40435437 CTGGTTCTGAGGAAGAAACC 58 40435478 40438263 GGCTTTCATGATCCTGAACTC 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 1 1 2 80 7 53991190 53992648 TACTTCAGAGTCAGATGGAAGG 59 53992686 53992707 ATTGTACGCTTAAGAAGACCAG 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000038172 1 1 2 80 7 114166347 114168247 GGAGAAGCCATATAATCCATCAC 59 114154874 114154895 AAGTTCAGGATAGCTTCCAGAG 60 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000086385 2 1 2 135 1 218512744 218512762 ATCTGAAGGCACTTCACCT 59 218509665 218512645 CACAGCCATGGATCTTTCG 59 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 1 2 2 80 16 8215853 8215871 GTCTCCATCAGTGAAGAGC 58 8215915 8217074 AAGAAATCAACCCACTGGC 58 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 3 2 3 81 3 121835299 121835321 TGCTATAGGGAAACGGAGTC 59 121831730 121831748 GAAGTGAGCCATAGCTTGC 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 3 1 1 83 5 135396655 135396676 CAGAATGCTTCACTTCATCCAG 60 135395741 135395759 CTGGCTCTGAGTCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 2 2 2 80 7 70337661 70337898 GTGTTGAGATTGTACCCTGTG 59 70337934 70337958 GGGAATAACATAGTTTCCTACACAG 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744 2 1 2 83 8 25853521 25880795 CATCGAGAGGGAGAGTGTG 59 25853456 25853475 ACATCCTCCTCTCCATAGGT 59 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 2 1 1 61 6 141488229 141488247 ATGCAGCTGGATCATCCTC 60 141487839 141487857 GCTGGACTTCTGAGTTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 1 2 3 80 17 30623119 30625418 TTTCACAGGAGTTGGTGAC 58 30625462 30625480 TTGTCCTGTATTTCACCGG 58 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000012222 3 1 2 86 4 7301402 7303978 TTCCCAGACAGTCTATGGC 59 7301052 7301070 TGTACTCAAAGACTCGGGC 59 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014034 3 1 2 84 2 263940428 263975748 AAGTTCTGCCAGATCAGGG 59 263975796 263975814 TCCACATCAGGACTGAGGA 60 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 3 2 2 81 4 148401728 148401746 GTCTGAGTACCTGACGGTG 60 148401172 148401683 GGAGCACCAGTCATACTGG 60 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 1 2 2 80 5 153855812 153857453 ACAGAGTACAGAAAGGTTTCAC 58 153857494 153857512 CTGGGATTACTGACCTCCT 58 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 1 1 1 62 8 40160486 40160505 AGGAGTTGATCTCAGAAGGA 58 40160150 40160168 ACTTCTCTGTTTCCCAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000042735 2 1 2 84 6 972261 972281 ATGGAAGGGATCTCAAATGTC 58 970089 972218 CTGTCGTCAAATACTGTTTCTC 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133 2 1 2 80 11 4246494 4261651 TCATTGTACACGATGTTCCCA 60 4246434 4246452 CAGTGGTTGTTACTGGTGC 59 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904 1 1 2 80 9 20112181 20112202 TGGAAGTGAGTACAGTTCAGAG 60 20111970 20112140 TTGTTAGGTTGGCTTGCTG 59 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160 1 1 2 80 3 79861379 79861397 ACAATGATGACACCATGCT 57 79861438 79865436 CTTTCTCATAGTCCTTGACCTG 58 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775 2 1 2 80 3 149354339 149354506 AGCAAACATGAATGACCCTC 59 149354278 149354297 TATCCCAGTATGAACTGGGC 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 2 2 2 80 8 56465776 56466910 TGTTTACAGGGAATGCATCAG 59 56466949 56466970 TCTTAACTAGATCTGCTCCTCC 59 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 2 2 2 80 7 54910515 54910535 TATGGAGAATTCAAACGTGCC 59 54910576 54912745 CAATTTCATGAAGGCCTTGC 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000088023 3 1 6 81 12 41233228 41236126 CCTATGATGTCCTGTTTGCC 59 41233166 41233184 CTGATGAGGTAGGCGTAGG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 3 3 6 83 12 41302509 41302527 AGAGGAACTTCCTGAAGCG 59 41300158 41302464 TCTCCTTACACAGTTGGTACC 59 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000012354 3 1 2 80 3 21627218 21628521 AAGACCATGTGATTCTGGAGG 60 21627158 21627176 TAATAGACACTGGGCGTGG 59 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000072225 1 1 3 106 8 90629291 90629310 ATTAACAGAGCTGCTAAGGG 57 90628668 90629222 GTTCTCTGTGCCTCTTCAG 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180 3 1 2 80 11 27061126 27061147 CTTACGGTTTATAATGCAGCAG 58 27059289 27061088 ATAAATGGGATCAACTGCTCAC 59 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036642 1 1 4 80 8 124844302 124892615 CAGGAACGTATATGACCGC 58 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488 2 1 2 116 6 105463800 105467544 AGATGAAGGCCTCAAGTCC 59 105463702 105463720 TCCATAAGGCTGGTGAACC 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 2 3 4 80 14 79355781 79355799 GTTGCTGAGACTGAGGAGG 60 79355840 79387348 TCTAGCAAGCAAATTCCTTGTG 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000046622 3 1 4 80 4 167351766 167351784 AGCTCAGCTCAGAGAAGAG 59 167352677 167353577 ATCTGAATCTGAGTCTGGGTG 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821 2 1 4 91 4 167483798 167483816 ACTATAGAGGTCGTCCTCC 57 167483871 167483890 GATTCCTAGTCTTCGAGGC 57 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000055808 1 1 2 80 7 130334333 130334351 TGTCACTGGATGACTTCCC 59 130334392 130334497 GAATGATAAGCAGTTCACTGGA 59 NA Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 3 2 2 80 1 250621267 250621286 GATGGGTCAAATCGAATGGC 60 250615358 250621225 TCTCTTCAAGACCTCCAACC 59 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 2 1 1 69 6 141715824 141715844 GAAGTTGTTGCTAAACTGGGT 59 141715645 141715663 TACCAGCTTCACCTCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905 3 1 2 81 12 38279799 38282321 GAAGCAAAGAGGCAAGAAGAC 60 38282362 38282382 TGTTCTTTGTCATTGTGCTCC 60 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000036748 3 1 2 81 2 24709142 24709160 CCCAGCAGGAAATAAAGCT 58 24709207 24711320 GCAAATACGTTCTCTTCATCG 58 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395 3 2 3 132 5 136044831 136046012 CATTTCCCATTCACAGCCAC 60 136044718 136044736 GAATTCCCAGGGTTTGCAG 59 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000067104 3 1 2 80 9 17742304 17742323 AGAAGAACTGGAGACATGCT 59 17742366 17746327 ACTGTACGTACCAAACCGA 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 1 1 2 84 20 4120113 4124691 TCTGAGAGGATCAGTGTCTC 58 4124738 4124756 GTGACATTCACTCCTGCTG 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000025536 2 1 4 80 1 139992316 139993828 CCAAGGTCACATGGTTTCAG 59 139992255 139992273 GATGCCATGGTTAAGAGGC 59 NA Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 2 2 2 81 11 27386814 27386832 TTTGGGAGATGACTCGGAG 59 27386876 27389030 CAGTTTCACCTCACAGTCCT 60 NA Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 3 2 2 82 11 27386813 27386831 GTTTGGGAGATGACTCGGA 59 27386876 27389030 CAGTTTCACCTCACAGTCCT 60 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 2 3 3 86 7 107198092 107203731 AGTTAAAGTGGTTGGATGGC 59 107198025 107198044 TGATTTGCTGTTCAACTGCT 59 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000084875 1 1 3 84 7 107190048 107193547 GCCCAAGATAAGTTAAGCGAG 59 107189787 107189805 CACATTCAGGACCTTCCCA 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000081066 1 1 5 101 11 27831407 27831425 TTCATTGTTCTGGCTGCAG 59 27812814 27831342 TCAGTAATGCTGCTCAACG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000050073 1 2 5 80 11 27831376 27831397 TTTCTGTGTTTGTAGCCATTGG 60 27812913 27831338 TTGATGACTTTCCTTTCTGCTC 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578 2 1 2 98 1 199352936 199352954 GAGTTACCGGTGAGGATCG 60 199353016 199353273 GTATAGCTCGTGCACATGC 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578 3 1 2 100 1 199352933 199352951 CAAGAGTTACCGGTGAGGA 59 199353015 199353272 TATAGCTCGTGCACATGCA 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000082410 2 1 6 100 20 4612051 4612220 TGTAACCACCAAGGTAGCA 59 4612284 4612302 TCTACGTCGTTCACCACAG 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809 3 1 2 99 1 226850567 226853446 CAAAGAAGATTCCCAGAGGC 59 226850278 226850297 AACGTGCAACTCTTCAAGTC 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 3 2 3 80 X 15756744 15756762 TTCAGACAGCTTGTTTGCT 58 15756025 15756701 ATGTTGTGGAAGAACTCTGG 58 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000074723 2 1 2 126 2 113605824 113605844 GAGTATCACCTGACCCTTCAG 60 113599727 113605736 CACATGGCCCATTTACGTG 60 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858 3 1 2 123 2 113605823 113605841 TATCACCTGACCCTTCAGG 58 113584457 113605736 TCCTTGGACCATTTACGTG 58 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000058689 2 1 2 118 13 84591835 84598176 TCTACACCAGCATAGATTTCAG 58 84598255 84598273 TAGGAAGCATCATGGTGTG 57 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 3 1 1 76 2 25235140 25235158 GGAGGTATCACCCTTCTGG 59 25225109 25225127 CTCCCTTTACTGTTGGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 1 2 3 81 20 5109837 5109855 CACATGCTCTTCATGGTGC 60 5108903 5109793 TCTTGAAACCGTAGAGCCTG 60 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 1 2 2 80 5 135363565 135366388 TGCAGTAGGTGGATACACG 59 135366430 135366450 GTATCGAAACGCTCTACACAG 59 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953 2 1 2 200 6 7924122 7924438 GGCATTTGGTATTGATAAGAGC 58 7926991 7927091 GTGCTGGTACTCTTTGGTG 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756 3 2 3 80 3 14637211 14643831 GAATATGTCAACAGGACCCA 57 14637150 14637169 AATGCTGTCTCCATTTCTCC 58 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000085756 2 1 3 118 3 14643904 14644876 TCAAGATCTGGATCACAGGAG 59 14637205 14643825 TAACTGTGGGTCCTGTTGAC 60 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 1 2 2 80 9 92892554 92892577 CTCAAGTTAATGATGAACCTCCTC 59 92892615 92893236 CACAAACACCTTGAACACGT 60 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000082422 2 1 2 80 13 83869827 83869845 ACAAGAAGGAAACCACCCT 59 83865737 83869783 TGGTGATTTCTCCTCACCA 58 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 1 2 2 80 10 89957717 89957739 GAGAAACTCCGCTATTATGAGAG 59 89956456 89957677 CTCCATCACATCCTCAGCA 59 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 2 2 2 88 4 170161996 170162975 TTTGATGCCGTCAAGAACG 59 170161926 170161945 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000064168 1 1 6 126 13 84513678 84513696 CTTCCTGTTCTTCGTGCTG 59 84513786 84522957 GTAACCTTTGCGAAAGGCC 60 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000067384 1 1 2 89 1 239442200 239442218 CATCGACAGACTCATTGCT 58 239442270 239444430 CTCCCATCAGCTGAATTCTG 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076758,ENSRNOT00000000787 2 2 3 81 20 21789424 21840972 TGAGTTTGCGCCAAATCTC 59 21841017 21841035 CTTTGAGCCACTGAAGGAG 58 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000049303 1 3 5 126 4 176292087 176294945 AGATCAAGGTGTTTCTGATGG 58 176291981 176292000 AATCCAACTATAGCTGTGGG 57 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 2 2 3 80 20 5118417 5118572 GGATGTGGTCTTGACTGAC 58 5118613 5118634 TCCTACTCTGAATTCAGAAAGG 57 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000060819 1 1 3 96 20 5118084 5118298 GTCTCCCAGACACTTCCTC 59 5118358 5118376 GAAGGAAAGAAGTGGTGGC 59 NA InUTR Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 3 2 2 80 12 45046755 45048341 ACTTAAAGGCCATGGAAATGC 60 45046695 45046715 TGAGTGCTTTGTACTGTTTGG 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000091858 1 1 3 80 8 77288631 77288649 TGTCTGAACTGCAAGAAGG 58 77288563 77288586 GAGGAAGAGTGTCTTTGCG 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000091858 3 1 3 81 8 77288630 77288648 GTCTGAACTGCAAGAAGGG 59 77288561 77288585 ATGAGGAAGAGTGTCTTTGC 58 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199 1 1 2 82 1 178955221 179009895 TTCATCCAGTCCTACTTTGTG 58 178955159 178955177 GCTCGATCATCGATCACAC 59 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000080945 3 1 2 80 X 156926051 156926069 AAGGACAAGGAGGACACTC 59 156926112 156926623 TTCATTGTCACTGTACTCGC 58 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000080778 2 1 2 83 8 117343832 117344217 GGCCAGAAAGTTACAGATGAC 59 117344261 117344280 ATCGTAGAGCTTGATGGGAC 59 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733 2 1 2 81 20 44595976 44595995 GAAATCCCTCGAGAATCCCT 59 44596039 44599152 CATTCCAGGTACCCATCCA 59 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000080507 2 1 3 81 6 10378449 10378470 GAATCCTGTTCAAGCCACC 59 10378514 10378533 AGTTGCTCTTCTCGGATAGG 59 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 2 2 2 94 1 99534185 99534204 CCTACATCAGAGGTGTGGTC 60 99537448 99537466 TTACTCTTGATGCGTCCCT 58 NA DesignNoJunction Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653 1 1 3 80 14 72333626 72335516 CCATTAAGGGCTGAAGTGG 58 72333564 72333583 ATCTGTATCGATTCCTGCGT 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526 3 1 2 82 1 229077694 229078805 CTGATTTGGGTTCCCAGTC 58 229078849 229078869 TTCTGAGTGTTTGACTTGGAG 58 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 2 2 2 80 8 85444109 85444129 TTTCCAGAGTCTGCAATAAGG 58 85444169 85452652 GTGGAAGAAACCATGTTTGTG 58 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 3 2 2 87 10 91792311 91792330 GAATGCCAGTTCCAGTTCAG 59 91790871 91792262 CTGTCTCCTTGAAGCCTCTC 60 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 2 2 3 88 14 81944454 81944473 AGCTGTCTACATCAGAAGCC 60 81948658 81950490 CTTGTGAACCTGTCTATATTCCAG 59 NA Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 1 2 2 81 9 41007335 41007353 TACAAGCCCTCACAAACAC 58 41007398 41008031 TGCCACAGATTTCCTTCTG 58 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 2 1 1 65 3 123849758 123849776 TTTGCCCATGTAAGCATGC 60 123849059 123849077 ACACTTTCCGGACTTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 1 2 2 80 2 149925053 149925071 ATGCTGCCGTATGATTCCA 60 149925114 149926806 AGCAAGTCTGTAGTCTGGAG 59 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000036646 1 1 2 80 14 64782931 64782949 TCACGAAGAAAGCCAAGAG 58 64782993 64785041 CAATCAGGTAGAACCGCAG 58 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 3 2 2 80 3 148717271 148717289 AGCAGAGACCATACAGCTG 59 148714519 148717227 TGGCCATGTGCCTATACAG 60 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000079795 3 1 3 101 14 6520017 6520037 TATGCCCAGTCCCTTACAC 59 6519934 6519952 GTGACACATGTGGTCTCCA 60 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 2 1 1 60 1 64128449 64128467 GAGGAAGAGAAACGACAGG 58 64129159 64129180 AGTATGTCAGAATACCTAGTGC 57 NA DesignNoJunction Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000001169 3 1 5 96 X 159169152 159169170 GAAGCTTCTTCCCGAAAGG 59 159169229 159171039 TTTACCAAACCCTTGTTGCA 59 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 3 1 1 98 8 55037823 55037841 CAGAAGGCACAGTTCACTG 59 55038797 55038815 TTCAGTTCGGGAGTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419 2 1 3 81 3 43255597 43255616 ATTCTTATGGGTGGAGGAGC 59 43255660 43271604 CCAGGCTTACTTGCTTCCT 60 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 1 3 3 80 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583922 100584973 ATGAAACACCTGAGTGATGAC 58 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 1 3 3 80 2 148048193 148048211 TGGACATCCGGACAAAGAG 59 148046335 148048150 CAAAGACCAAGACTCTCCCA 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 2 4 4 82 13 91155991 91156009 TGGAAGCCAATGGCTACTC 60 91154511 91155156 CCTTCAGAAGATCTCCCGTC 60 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 2 4 4 82 13 91228836 91228854 TGGAAGCCAATGGCTACTC 60 91154511 91227997 CCTTCAGAAGATCTCCCGTC 60 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922 2 1 2 94 8 59420196 59458553 CCAGAGCCCAAGGATACAC 60 59458611 59458629 GGTGCCTCCAAGTTTAGGT 60 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000082469 2 1 2 80 13 90576944 90576964 ACTGACCTGTTTGATAGTCAC 58 90577003 90591703 CATAACAGAGATCCGATGATGG 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 2 4 4 80 3 152573076 152573095 GTCTGTGAGCACCTTAACCT 60 152573138 152573680 CAGCCAATTCTTCTGGCTG 59 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000067975 3 1 4 83 12 48167554 48168612 CTGATCCAGAGGCAAGAGG 60 48167350 48167371 CTCCACGTTCAGATATCTCCTC 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000000821 1 1 4 146 12 48164878 48164898 TGTCAGCCATTGACATGTG 59 48162033 48164214 CACATAAACCTCCAGGGAC 58 NA Rattus norvegicus 81 Rn60_10_0878.7 ENSRNOG00000051123 ENSRNOT00000075981 1 1 1 82 10 87922485 87922503 AAAGATTGCTCTTCTGGCA 57 87922251 87922440 GAACAATCGTTCCTTTCCAG 57 NA Rattus norvegicus 81 Cd180 ENSRNOG00000010266 ENSRNOT00000013768 3 1 1 81 2 32828971 32830905 TGGATTTAACCAGGTGCCA 59 32830947 32830968 GTTAGCACAAGTGTCTCTAACC 59 NA Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000066767,ENSRNOT00000086116 2 2 2 80 7 60727117 60727843 GTGAAACAGAAGAGAACACAG 57 60727057 60727075 GGCTCTCATCAAAGGACAG 58 NA Rattus norvegicus 81 P2ry1 ENSRNOG00000014232 ENSRNOT00000019305 2 1 1 81 2 151316566 151318907 CTCAGTTTGTAACATGGTCAC 57 151318949 151318968 TTTGGCCAATAGAATGTTGC 57 NA InUTR Rattus norvegicus 81 Smtnl2 ENSRNOG00000015157 ENSRNOT00000020379 3 1 1 83 10 58961457 58961475 CTTCGACTACAATGCCCTG 58 58952961 58961410 CAGTTGGCCAGATTCTCAG 58 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 2 2 2 80 1 68446244 68446264 CCTGGTTGCTTTCATTGTAGG 60 68446302 68450526 GGTACAGCATATACAGAAACCAG 59 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244 1 1 2 106 2 166423453 166423473 CCAGAAGACATCTGAAATGGA 58 166423541 166424765 AGTTTGGCAAATCAAACCC 57 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 3 2 2 81 8 36235133 36238683 CCTTGACTGTCAATGGACC 58 36238727 36238746 CATTTGATCTGGCCCTTCTC 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000057473 3 1 2 132 2 172349990 172458487 CCTCTGCACAGAAGAATGAG 58 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000090232 3 1 2 80 5 156549293 156551096 TCTATGCAGACAAATGAGCC 58 156551138 156551157 TCTGGTAGAAAGTCCTTCCA 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000086967 3 1 5 82 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664241 28664265 GCATACCCACATAACTTTGGAG 60 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000087723 1 1 3 80 10 59533613 59538098 TCAGCATAGCACAGAACTCC 60 59538374 59538393 ACCAAGAGGTCCTCAAACTG 60 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 2 2 2 125 10 56578181 56578291 ACGCCCATGAATATTAAGTACG 59 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649 2 1 2 105 2 34255467 34258835 TGGTGAAGGTTCTGGAGTG 59 34258902 34258922 AGACAGTCATGACAGACTGTG 60 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016596 3 1 2 80 2 34257860 34257880 AAATATTAGCCCATGGACCTG 58 34257919 34258834 ACTCCAGAACTGAAAGATAGTG 58 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260 2 1 2 90 9 42918045 42919376 TCCTCCTGTCTCTTTGTTCC 59 42917974 42917992 AAGGATGGTGCCTCTTCAG 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445 1 1 3 80 12 43501140 43503324 ACTGTGGATTTCAAGGTGC 58 43501078 43501096 TCATCCTTGTCATAGGGCC 59 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 2 2 2 80 12 51852895 51853587 AGAGGACTGTCTTATCAAGATCAC 60 51852838 51852858 CCACATAGAGTCCTCATCAGG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000089624 1 1 5 80 8 99716930 99716951 GTCAAGAAGTCATGACTCTGGA 60 99716990 99717128 GGATTTCTATCTCCTGGAGGC 60 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 3 2 2 80 2 208795952 208795972 AAGTTCCCTATGCCTACAAGG 60 208796014 208796118 TAAGCCACTGAGCCTTGAC 60 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000055038 1 1 3 87 3 176486527 176486545 TTACAAGCAGCAGTCAGAG 58 176487420 176487899 CTCTTTCACCTTCTCCTGTG 58 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 1 2 3 166 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147799835 147799853 AGAAGGTGTGCAGACACTC 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957 1 1 2 82 10 89237701 89237719 AATAGCCACGATGGACTGG 60 89239713 89240102 ACCTTGGTTCCTTGGAAGG 60 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 1 3 3 80 1 219856717 219857179 GTGGTCTTCAAGTTCTGTGAG 59 219857221 219857239 TGGCAGGTAGTTAAGGGAG 58 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 3 3 3 80 1 219856720 219857182 GTCTTCAAGTTCTGTGAGGTG 59 219857223 219857242 GTTTGGCAGGTAGTTAAGGG 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 3 3 3 80 5 61585495 61585513 TCTGGAAGCGTATCTGAGG 59 61585556 61586708 ACAGCATAGCAGACAATCTC 58 NA Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832 3 1 2 98 2 34719848 34748284 ATGACGAAGGCTGGATGTC 60 34719768 34719790 CATAGATCTCAAACGTGTCTGAG 59 NA Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 1 2 2 80 9 2210932 2210954 CTCTGAAGGACTTACTGAAAGAC 59 2210994 2229042 TGGAGGAGATCATGCTCTG 59 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 3 2 2 80 2 28798507 28798526 CCGAGATACCTCTGAAATCG 58 28794474 28798465 ATTATCACTGAGTCACCCAC 57 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598 1 1 2 80 2 39439397 39444778 GGACGATACATGTTGTCAGG 59 39444821 39444839 GTAATAGGGCTGTCTGCTG 58 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000083579 2 1 2 97 16 32512845 32512863 TACAGTGACAGACCACACC 59 32512922 32516235 CCAAGACAATCCCATTGTGAG 59 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 2 2 2 60 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794545 117794564 AACCACGGTAGTAGTTGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 3 2 2 80 10 90403055 90403076 AGAAGAAGGAGAATGAGTCCAG 59 90402848 90403015 TCGTGATTCCTATCCGAGTG 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000081376 1 1 2 81 3 5817509 5817530 TTAGACACTACACTCAAGTTCC 58 5816034 5817467 GTGTGAACACTGGAGATCG 58 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000082138 2 1 2 89 5 157899481 157899499 CCTAACCTGAACCAGAGCA 59 157899550 157900279 AGTTTCAGAACTCTCCAGGAC 60 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 2 1 3 81 20 4789701 4789719 GAGCTGTGATCATTGGAGC 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 3 1 3 83 20 4789703 4789721 TGGAGCTGTGATCATTGGA 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 2 1 3 80 20 4696039 4789683 GGAAGAGAAACACAGGAGGA 59 4674756 4674774 GGGACACATCAGAGCTCTG 60 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000005561 2 1 2 172 7 94489770 94500832 TACCAAAGGATCAACAGAAGAG 58 94488999 94489637 TACTTTCTTCAGCAGCCTG 58 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701 2 1 2 81 2 211466231 211466249 GTGAACCCTGACTTGTCAG 58 211466294 211467929 AATCATCAACCTTGTGCGT 58 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 3 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532382 22534333 CTTGTAGACGTTCCTCTGCT 60 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 1 2 2 80 10 98324632 98324650 CACCCATTACATGGCAGAG 58 98324352 98324591 GATCCAATACATCTCAGCTTCC 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 3 3 3 80 9 50622544 50622564 GACTCAGCTAATGAATGGGAC 59 50622604 50623898 GCTTTCAGTCCTGAAAGTACC 59 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000015432 3 1 2 114 9 61418681 61528873 CTCAAACTCTGCGATCAGC 59 61383653 61418604 GTTTCTCAGAATCCAGTGCG 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 2 3 3 80 2 216375648 216375774 CGTCAAATCAGGAACATGGT 59 216375587 216375605 GTTGCTGCCATTATCCCAC 59 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 2 2 2 80 8 129206271 129206289 GCATCGTGGTACTTGTGAC 59 129206332 129218203 CGATTCCATACTTCAGCCCT 60 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 2 2 2 80 9 64799878 64799898 AGTCATGATCAAGGAAGAGGT 59 64799938 64821481 TCAATGATGCAGTTGTGTAGC 59 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 3 2 2 80 9 64821523 64834947 AAGAAGCCATGGACATCCT 59 64834989 64835009 CCATTTGACTGGCTAGATCAG 59 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000073469 2 1 2 80 2 44379015 44379383 ATCTGGTCAGTCTACCACC 58 44378953 44378971 GACTCCAAGTGCAAGTCAG 59 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 3 1 1 79 8 43534538 43534556 TTCCTCTTCAGGCCTTAGG 58 43534445 43534463 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625 3 1 3 126 8 127190682 127190700 CTTTGCTTTGGATCCCTCC 59 127195019 127198421 TGTGTCACCTGACTGAGAC 59 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000080257 3 1 2 90 3 2716628 2717612 TGCAGAGGACTGGTTACTG 59 2716556 2716575 TATGTTGAGAGCAATGGCAG 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 1 3 8 80 20 4482893 4482914 ACAAATTCTTCCTCTATGGCCT 60 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 3 2 2 80 20 4379799 4379994 AAAGAAAGTTTGGGAGTGTGC 60 4379739 4379759 GTACACTGGTTGACTGTAGGA 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 1 2 2 80 16 69070812 69070833 AGATAACAAACTCTAGCTTGGG 58 69070872 69074892 GCTGGTATTTCTTCATGAGGG 59 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 2 3 3 80 5 59630464 59630482 CCGTCTGTTACATCCAGCT 60 59624446 59630420 GTTCCTTGATGGAGCTGGT 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 3 2 2 86 3 172177587 172177606 AAGATCGCAGCATTTCTTCG 59 172177655 172178006 TCATCCGTGAAACCCTGAC 60 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769 2 1 2 80 3 66722431 66773299 CTATGAAAGGAGTTAAGCACCT 58 66773340 66773358 CTTCTCTTTCACTTGCGCT 59 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 2 2 2 81 5 155705920 155705940 TTGACAACTATGCAGTCACAG 59 155703126 155705877 TAATCCTCTTGCCCTGCAG 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 3 2 3 110 3 150853790 150855175 GGTATTTATGATAACAGATGCCCTC 60 150850099 150850117 TACTGGTCCAGCTCTAGGA 59 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 1 2 2 80 5 152089769 152090478 CCTGAAAGATGTGTATGACGAC 59 152089710 152089728 ATCTTATCCAGCAGCTCCC 59 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 2 3 3 80 5 100474453 100493417 TGAGCGAGATCAAGATATGTC 58 100474393 100474411 TCCTGTGGAGATGTAGAGC 58 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000017106 3 1 3 81 16 74800638 74800696 GCGCTAACAAACTTGTGAG 58 74800740 74800759 GAGTCACTAGTCCTTGTTCC 57 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 2 2 2 80 3 173896375 173896397 CAACTTCAGGATCAGAATCAGAG 59 173894895 173896336 CAGTCTCCTCCTTTGTTGGT 60 NA Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000008959 3 1 2 180 3 170998856 170999472 CACTTACGCAACCAAGAGTC 59 170999611 171000001 TGTAGATATCACATGCAGACTCC 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141 2 1 3 106 3 51410859 51410880 TACCCTACAGTTTATGTACCCT 58 51408708 51409138 TTACTCCATATCCTCCCGG 58 NA Rattus norvegicus 81 AY172581.15 ENSRNOG00000032274 ENSRNOT00000042644 1 1 1 60 MT 3841 3861 GTCAGCTAACTAAGCTATCGG 58 3883 3901 GTACGGGAAGGGTTTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054535 ENSRNOT00000081009 2 1 1 60 5 22905619 22905639 CCAAAGTTGGAAACTTGTCTG 58 22905579 22905600 GAGAACAAATGCATGTCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061662 ENSRNOT00000084684 1 1 1 60 5 150530194 150530214 TGCATATTCCTACGACTTCTC 57 150530154 150530172 CTGCATGGTTTGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017922.1 ENSRNOG00000060405 ENSRNOT00000087476 1 1 1 80 15 34634258 34634676 AGAGATCACCATATGAGACTCC 59 34634199 34634223 CTTCTCCTCCATAAGATACAATACC 59 Novel Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 1 1 1 104 2 220647217 220647236 GTCCAGGCATACTTTACCAC 58 220645319 220645915 TTTGTCAGTGGCACATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041403.1 ENSRNOG00000057469 ENSRNOT00000091479 2 1 1 60 X 128883501 128883520 GATACCTTGGGAGACATGAG 57 128883541 128883561 TATTCTGGATTTCTCGTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008074.1 ENSRNOG00000054928 ENSRNOT00000086022 1 1 1 60 2 42002005 42002025 TCAAACAGACATTCTAGGCCA 60 42001965 42001983 TGACCTTCAAAGGGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008074.1 ENSRNOG00000054928 ENSRNOT00000086022 2 1 1 60 2 42002004 42002023 AAACAGACATTCTAGGCCAG 58 42001963 42001981 TTTGACCTTCAAAGGGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054477 ENSRNOT00000080957 1 1 1 60 2 210913888 210913910 GATACAGAGAAGATTAGCATGGC 59 210913930 210913948 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044629 ENSRNOT00000069896 2 1 1 60 11 53453892 53453911 GGTCGTACCATTCTGAACAC 59 53453851 53453871 GCTTATTAGCTTCCGATTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053308 ENSRNOT00000086904 2 1 1 60 5 150939611 150939631 AACGACACAGAGAAGATTAGC 58 150939571 150939589 CGCTTCACAAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060368 ENSRNOT00000079018 3 1 1 60 5 169380897 169380917 TGTATTGTCACTGGTCCTCTG 60 169380857 169380878 TCATCTAACCTTGACTGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050776 ENSRNOT00000072576 2 1 1 60 16 20205935 20205954 CTCATCTGATCGCTGAACCT 60 20205977 20205995 GAGTATCCCAGGCGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058947 ENSRNOT00000078745 2 1 1 60 8 126637212 126637231 GGATGACCTTCCCTAAGGAG 59 126637253 126637272 ACATAGCTGTTGTAGACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hammerhead_HH9 ENSRNOG00000051617 ENSRNOT00000086203 1 1 1 62 5 59378593 59378611 GTTACCTGCAGCTGATGAG 58 59378637 59378655 TAAGCCAGTACTGCAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049764.1 ENSRNOG00000041600 ENSRNOT00000063353 2 1 1 60 5 136907962 136907983 CATTGGAAGAAGGAAGGTTCTC 59 136908003 136908022 AGTTACTCAGTCCCACAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055026 ENSRNOT00000085820 1 1 1 62 2 5782550 5782570 CAAAGAAGATTAGAATGGCCC 57 5782508 5782526 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 2 1 1 156 11 43415692 43415714 TTTCTCTGGCTCGATCCAG 59 43415831 43415852 GCCATAGTACAAAGACACAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054727 ENSRNOT00000082038 1 1 1 60 11 67337018 67337038 GGAAGGATACAGAGGTTACCA 59 67336978 67336997 GAGTTTCATGCATTTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056185 ENSRNOT00000088818 1 1 1 60 8 68354315 68354335 TCTGCTCTTAGTTGTGGTCTC 60 68354357 68354375 ATTAGCAATAATCGCGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052855 ENSRNOT00000082777 2 1 1 60 16 24160789 24160809 AGTAGGTGGCATAGAGAAGAG 59 24160828 24160849 AGATGTTTACAGTTCAGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000061440 ENSRNOT00000081926 2 1 1 77 16 8337994 8338012 CTGCTGGGAGAGTAATGTG 58 8337935 8337953 CTTCTTACACCAGAGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060900 ENSRNOT00000089992 2 1 1 60 X 152800981 152801000 GTTCAGGCTGTCATATCTGG 58 152801018 152801041 CACCTAGATCAACCAAATCAATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054357 ENSRNOT00000086467 1 1 1 60 8 109820173 109820191 ATGTGTCAGTAGGTGGCAG 59 109820131 109820149 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034249.1 ENSRNOG00000046846 ENSRNOT00000072958 1 1 1 60 11 58661245 58661264 AAATAACTGGGCAAAGGCTC 59 58661286 58661305 AACTGAGAAATGGGCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044353 ENSRNOT00000069620 2 1 1 65 8 67470140 67470160 GAATGCTCTCAACCTCATCTG 59 67470187 67470205 CCATCCGAGTACCAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058948 ENSRNOT00000081732 2 1 1 60 16 64345301 64345320 TCACCTTTCTCCCTCATACC 59 64345341 64345361 CTCTTGATTGAGTGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034790 ENSRNOT00000052913 2 1 1 60 16 81470828 81470847 CTGATCTTGTCTGATCTCGG 58 81470868 81470888 TCTCCCATCCAATACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059115 ENSRNOT00000082466 2 1 1 60 X 95958696 95958714 CTTATCCATTGCACTCCGG 58 95958654 95958673 TCGAGTTTCCAACATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059388 ENSRNOT00000079685 2 1 1 60 8 132197062 132197083 AACGTCTTTCTATGACACTCTG 58 132197023 132197043 GAGCTGACCATTACATTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052262 ENSRNOT00000080975 3 1 1 60 16 41928680 41928699 CAGGCTATGTCTATGCTCAG 58 41928639 41928660 CGTTAGGCTTCTAACCTTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045493 ENSRNOT00000070760 3 1 1 62 16 25578392 25578410 CTACGGCCATACCACTCTG 60 25578348 25578368 CTGCTGTTTGATTTCTTCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056848 ENSRNOT00000089826 1 1 1 60 8 62078873 62078896 GAGAGTTAAGCTTCTAAGACTTCC 59 62078836 62078857 GGATAATGTCAAATACACCACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060854 ENSRNOT00000087904 1 1 1 60 8 48693715 48693735 GCATGTACTGTCAAAGATCCT 58 48693755 48693775 GTTTGAACTGAGAAATGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060854 ENSRNOT00000087904 2 1 1 60 8 48693715 48693735 GCATGTACTGTCAAAGATCCT 58 48693754 48693775 GTTTGAACTGAGAAATGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001416.2 ENSRNOG00000059359 ENSRNOT00000087706 2 1 1 60 1 42969035 42969053 AATGATGCTGTCCAGATCC 57 42969077 42969095 AGACACATCTGTGGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054127 ENSRNOT00000086819 1 1 1 64 8 38137486 38137504 TTTCTTTCCTCAGCAGCAC 58 38137440 38137458 CATCCTTGTGGAGAGTCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073381.1 ENSRNOG00000027052 ENSRNOT00000030115 1 1 1 60 8 33345238 33345256 TCCAAGCTCTCCAAGACAG 59 33345196 33345216 TAATGACAGTGAGGACACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039694.1 ENSRNOG00000057430 ENSRNOT00000074962 3 1 1 60 X 82710807 82710825 ACATGGAAACAACCTTGGA 57 82710846 82710867 CTTGTATCTACAGCTCCTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052800 ENSRNOT00000086404 1 1 1 64 16 10740499 10740517 AAGGTTGTTCTCCCTGCTC 60 10740453 10740473 CAGGTAGATAGCAGACAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057503 ENSRNOT00000078702 2 1 1 63 16 9448624 9448642 AGACAGGCTCTGTCTACAC 59 9448666 9448687 TGTTAGGCTACTAATCCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053117 ENSRNOT00000083416 2 1 1 65 X 154843081 154843099 TGTGTCTGCTTTGTCACAC 59 154843034 154843055 CTAAGCATAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060609 ENSRNOT00000090750 2 1 1 60 2 248528224 248528246 GATACAGAGAAGATTAGCATGGC 59 248528263 248528284 GAACACTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052045 ENSRNOT00000088750 2 1 1 61 9 112717746 112717764 GGCTGCTATGTCACATGTG 59 112717703 112717723 TGAGCATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2465.1 ENSRNOG00000051330 ENSRNOT00000076845 2 1 1 60 1 239155969 239155988 GTTTAGCTTCTCTGTGTCCG 59 239156005 239156029 GAAGCTAATACAGAGTTCTTGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062766.1 ENSRNOG00000051824 ENSRNOT00000085861 3 1 1 81 6 7035992 7036011 GCTCAGTGAGCAACTAGGA 59 7036056 7036074 GGATGCCTTGCAAAGTGTC 60 Novel Rattus norvegicus 81 SNORD77 ENSRNOG00000051793 ENSRNOT00000082736 2 1 1 60 17 73704759 73704778 GATATAGCATAGCTCGGCAG 58 73704800 73704819 CAGATAGGAGCGAAAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076943,ENSRNOT00000007671 3 2 4 80 7 115849686 115849705 CTCTCATCTCCCTGAAGAGC 59 115849420 115849643 CTGGGCTGTTGAGAAACTC 59 Novel Rattus norvegicus 81 SNORD11 ENSRNOG00000053003 ENSRNOT00000080611 1 1 1 60 9 66512670 66512688 GATTTCTGATGCCTTGCCT 58 66512712 66512730 GAGGTAGTGACTGAAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052033 ENSRNOT00000082748 3 1 1 60 4 54935446 54935465 CAACGTTGGAGATGAAGCTG 60 54935405 54935427 TCTGAGAAGTCGTAGGAATATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061586 ENSRNOT00000077572 1 1 1 60 X 156720348 156720366 TTTCCCATCGGATCTTGAC 57 156720389 156720408 GCTTCAGTGTACTCTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141028.1 ENSRNOG00000036569 ENSRNOT00000054673 1 1 1 62 X 5725714 5725734 GCATCTCTGGGTGAGTATCTC 60 5725672 5725690 AAACCGAGAGGCCTAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056696 ENSRNOT00000086666 2 1 1 60 6 133822235 133822255 GACCAATGATGAGATCTGGTG 59 133822276 133822295 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000051540 ENSRNOT00000091290 3 1 1 62 17 90065332 90065350 AGGCCTCTCATAATGTCGC 60 90065288 90065306 ACAGAGGCTATGCATTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070085.1 ENSRNOG00000052246 ENSRNOT00000092188 3 1 1 60 8 50526686 50526704 TTGGCTTTCTCACCAAGTG 58 50526644 50526664 CCCTGATCGAGTATCATACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057148 ENSRNOT00000081521 1 1 1 60 9 85010668 85010688 CAAAGAGGATGAAGAGGACGA 60 85010710 85010728 AACCTCAACTGAAGACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051879 ENSRNOT00000077140 3 1 1 60 9 3981612 3981631 TTCTGAAATTGGACCGACAC 59 3981652 3981672 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054786 ENSRNOT00000079057 2 1 1 60 2 89239214 89239234 CTATTACTTTCCTTCCTCGCT 57 89239255 89239274 TAACCAAACACTCAGCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058056 ENSRNOT00000085208 1 1 1 60 15 36421664 36421682 ACATCAGTAGGTGGCAGAG 59 36421704 36421724 TTCATAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053976 ENSRNOT00000091887 2 1 1 60 15 11045037 11045058 CATCAATAGGTGACAGAAAGGA 58 11045078 11045097 GTTCATGGGTTGGAACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129244.1 ENSRNOG00000045893 ENSRNOT00000071527 2 1 1 60 15 23733332 23733350 TTTGAGAACTGGGCTAGCC 60 23733290 23733309 AGAAAGACTACCTGTTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017745.3 ENSRNOG00000054569 ENSRNOT00000087199 1 1 1 103 15 30550240 30550364 CCTACTCGGAAGGACTCAC 59 30550431 30550449 GTGTGGCTGAATAAGTGCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051944 ENSRNOT00000082801 2 1 1 60 X 76209972 76209993 ATACAGAGAAGATTAGCATGGC 58 76209933 76209953 GGAATGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041822 ENSRNOT00000063575 3 1 1 60 X 51691516 51691535 CTGATCCCAGAAGTTAAGCA 57 51691558 51691576 CCCAGTTAGTTTCCCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053024 ENSRNOT00000079755 2 1 1 63 7 118329415 118329436 CAGAGAAGGTACTATGATCGTG 58 118329373 118329391 TACAGGGATCAGCACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058149 ENSRNOT00000090194 3 1 1 60 6 117111708 117111727 TCCAGATATGCTGAACCCTG 59 117111750 117111768 AGTGTGAACACAGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058875 ENSRNOT00000090435 1 1 1 63 6 100454193 100454211 GCAGGCATACTGAAACTGG 59 100454238 100454256 TTCATGTCACCCTTGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060560 ENSRNOT00000080705 2 1 1 60 16 49592771 49592791 TGACTGTTCCTTAGCATTTCC 58 49592811 49592831 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073014.1 ENSRNOG00000005415 ENSRNOT00000007183 1 1 1 111 4 72523392 72523411 ACTGTCCCTAAGATGCTGAC 59 72523485 72523507 TCATACACTCCGTCACAGC 60 Novel Rattus norvegicus 81 SNORA20 ENSRNOG00000058152 ENSRNOT00000082390 3 1 1 87 1 48027214 48027232 AGCAGTTATACGCATGGGA 59 48027145 48027168 TGTCTAGACCATTCTACAAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA13 ENSRNOG00000052095 ENSRNOT00000079733 1 1 1 60 X 122453759 122453778 TAGGTCCTGGATACTGTCTC 57 122453798 122453819 TGGTGGATTGATAATGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061148 ENSRNOT00000092071 3 1 1 60 1 75662917 75662936 CGCTTTCTCCAAACATCCTG 60 75662958 75662977 GAGTGAGAAATGGCATGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058792 ENSRNOT00000088641 1 1 1 60 X 71442976 71442997 AGAAGGATAAAGGAAGTCTCCA 58 71443017 71443036 GATCCAAAGAGGAAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026984.2 ENSRNOG00000055099 ENSRNOT00000085437 1 1 1 80 17 8435406 8435426 TGATCAGTTGGAGCAAAGC 59 8435344 8435362 ATAAGAAGTGACGTGTGGC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000051788 ENSRNOT00000087195 3 1 1 61 2 47297121 47297143 GGGACAAAGAAGAATAGTATGGC 59 47297163 47297182 TTAATGCTTCGTGAGTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000058917 ENSRNOT00000083897 2 1 1 60 6 89737415 89737436 GGAAATGTAATAGGGCTTGCTC 60 89737457 89737475 CCAGGTACTGCAACATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058194 ENSRNOT00000084879 2 1 1 60 X 51000349 51000368 GGAGATGGCAGAAAGAAGAG 58 51000308 51000332 CAGATGTTCTTAGGTTAGTAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040918.2 ENSRNOG00000051839 ENSRNOT00000078839 3 1 1 60 X 114228877 114228896 TTTCTAACAAGCTCCCTGGT 59 114228836 114228855 CTTACTCAGTGTCTGACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043085.1 ENSRNOG00000046982 ENSRNOT00000075454 2 1 1 113 19 19895926 19895944 GGCTAAGTCTGGTAGTGCC 60 19896021 19896039 ACTCTGACGTCTTGGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000057146 ENSRNOT00000082556 1 1 1 60 X 22375197 22375217 CCCAAACAGGTTGATCTTCTC 59 22375238 22375257 AGTTCTAACCAAGCTCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021687.1 ENSRNOG00000054408 ENSRNOT00000071204 2 1 1 114 13 85519373 85519391 AAAGAGGCAACTTGAGCTG 58 85519471 85519489 ACTATGTCTTTGTGGCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC120246.2 ENSRNOG00000054344 ENSRNOT00000088175 1 1 1 142 19 25775336 25775354 GAAGCTGCAATGGAAGCAG 60 25775165 25775183 TCTTGCTTGGTACCAGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA9 ENSRNOG00000056770 ENSRNOT00000083475 3 1 1 63 1 87931424 87931442 TACAGAGCTTGCCAGAACC 60 87931379 87931398 CTTGCCTTGGATGAAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057422 ENSRNOT00000086088 2 1 1 60 9 86318222 86318242 AGAACCTCCAAACAAACATGC 60 86318182 86318200 TACCAGACACTGAAGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 3 1 1 75 19 28041833 28044370 AAATAGGCCACACTTCAGG 57 28041776 28041796 CAGAATTGACATGACCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA7 ENSRNOG00000053438 ENSRNOT00000090620 1 1 1 60 4 147718335 147718354 GAGAACAAGTCTAGCAGAGG 58 147718294 147718312 CCAATCACCAGCTACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003056.2 ENSRNOG00000059987 ENSRNOT00000086126 2 1 1 60 1 95455656 95455674 GAGGAGACTCTACAGGGAC 58 95455698 95455716 CTTACCCAAGAACAGGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053750 ENSRNOT00000090753 1 1 1 60 9 46378091 46378109 GTGCGTTAGTAGGTGACAG 58 46378131 46378151 TGTTCATAGGTCAGAACACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053750 ENSRNOT00000090753 2 1 1 60 9 46378092 46378111 TGCGTTAGTAGGTGACAGAG 59 46378131 46378152 ATGTTCATAGGTCAGAACACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059522 ENSRNOT00000082224 2 1 1 60 2 144607781 144607803 GGAACGATACAGAGAAGATTAGC 59 144607743 144607761 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059535 ENSRNOT00000083670 1 1 1 60 4 143869629 143869649 AACCTAGCAATGAAGTCTGTC 58 143869670 143869689 AGATGAGCTGGATCAATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052327 ENSRNOT00000081092 1 1 1 60 3 150800257 150800280 GGCTAAGATCAAGTGTAGTATCTG 59 150800298 150800317 GCATGTGTAAATGTTTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051527 ENSRNOT00000091483 3 1 1 61 4 130896930 130896948 AGGAAGATTAGCATGGCCC 60 130896887 130896906 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000055839 ENSRNOT00000085920 1 1 1 61 2 240582721 240582741 GACAGGTAAAGGAACTTTCCA 58 240582680 240582698 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000055839 ENSRNOT00000085920 3 1 1 62 2 240582721 240582741 GACAGGTAAAGGAACTTTCCA 58 240582679 240582697 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000053420 ENSRNOT00000087459 1 1 1 60 4 174612722 174612740 TGGTTATGGCTGATCAGCC 60 174612764 174612782 TCTAGGATGCTCTGGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060522.1 ENSRNOG00000036459 ENSRNOT00000054569 3 1 1 60 4 77479084 77479102 GATGTGGTCAGCTTCAAGG 59 77479042 77479061 AGTCAACAATTCCTAGGAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055244 ENSRNOT00000077247 2 1 1 60 3 118986584 118986602 ACTCCTTGAGATAGGACCC 58 118986626 118986644 CTAATCTTCTCCGCATGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061125 ENSRNOT00000088230 3 1 1 60 4 177070708 177070727 TTCGGTCAAGGGTATACGAG 59 177070667 177070686 TTGAGAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit3 ENSRNOG00000022839 ENSRNOT00000031025 3 1 1 81 1 252906325 252906344 TTTCTGAACTGTTCAGCCCA 60 252906387 252909510 ACTCCTTGTTGACCTCACTC 59 Novel InUTR Rattus norvegicus 81 Rn60_1_2682.1 ENSRNOG00000051306 ENSRNOT00000076237 2 1 1 80 1 260678897 260678916 GAAGAAATGCAGATTTGGCT 57 260645477 260678854 ATCCAAAGTGCTGTCACTG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000055945 ENSRNOT00000089465 2 1 1 61 4 182604665 182604686 CCAAACGTAGTAAACTCAACTG 58 182604625 182604643 GAGAATGGGAATGCAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055516 ENSRNOT00000091940 1 1 1 60 10 95459212 95459232 CATGGTTTGGATTTATGGCAG 58 95459172 95459193 TTCTAACACAGGACACTATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043407.1 ENSRNOG00000060719 ENSRNOT00000090797 1 1 1 80 19 28142702 28147980 CATGAAGAACAGGCCACAC 59 28142640 28142658 AGAATTGACATGACCGCCT 59 Novel Rattus norvegicus 81 SNORD116 ENSRNOG00000057393 ENSRNOT00000077365 1 1 1 64 1 194919182 194919201 AAACATTCCTTCGAAAGCTG 57 194919137 194919155 CAGTCACGATGATAGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069599.1 ENSRNOG00000009373 ENSRNOT00000012585 1 1 1 60 8 33076115 33076134 ATGTTGTGAAGGTGACACTG 59 33076155 33076175 GTATCTGCACTCTTCTTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.1 ENSRNOG00000049032 ENSRNOT00000073020 1 1 1 107 10 35146956 35146976 TATGAGCTGTGGCTTCCTC 59 35146865 35146884 AATGACACCAAGAAGCAGTG 59 Novel Rattus norvegicus 81 AABR07061412.1 ENSRNOG00000019158 ENSRNOT00000026000 1 1 1 99 4 122185865 122185885 ATCATCCCATCAAATGGCC 58 122185784 122185804 TTTCACCCTTGAGTAGAAGAC 57 Novel Rattus norvegicus 81 AABR07061412.1 ENSRNOG00000019158 ENSRNOT00000026000 3 1 1 100 4 122185865 122185885 ATCATCCCATCAAATGGCC 58 122185783 122185804 ATTTCACCCTTGAGTAGAAGAC 58 Novel Rattus norvegicus 81 AABR07072711.1 ENSRNOG00000051964 ENSRNOT00000080235 1 1 1 80 2 235083557 235083577 TTATGTACCAGACGATGACAG 57 235078871 235083516 TCATCTTCATAGTTCAGCCC 57 Novel Rattus norvegicus 81 AABR07030375.1 ENSRNOG00000022375 ENSRNOT00000034515 1 1 1 60 10 83147508 83147529 CAAGCTGGAGTGTATACAAGAG 59 83147469 83147487 TTCTTTGTTCTTCCGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030375.1 ENSRNOG00000022375 ENSRNOT00000034515 3 1 1 60 10 83147503 83147524 TGGAGTGTATACAAGAGAAGGA 58 83147464 83147484 TTGGATTCTTTGTTCTTCCGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123471.1 ENSRNOG00000018377 ENSRNOT00000024755 3 1 1 60 19 29801840 29801858 TACAGCAGAAAGGTCTGGG 59 29801796 29801817 CAATCTCCCACAACTTTAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061364 ENSRNOT00000086845 3 1 1 60 6 6221613 6221635 GAGAAAGAGAATTAGCATGTCCC 59 6221575 6221594 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056698 ENSRNOT00000084411 3 1 1 60 10 80868039 80868059 AGGTCAAGGGTATAGGAAGAG 58 80867999 80868018 CCCTGAGAGCTTGTTATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052505 ENSRNOT00000087339 2 1 1 60 7 140036818 140036838 CCCATAAGAACAACAATGCCA 59 140036778 140036800 TCTGTGGATAGTAGTTTAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013147.1 ENSRNOG00000053852 ENSRNOT00000077434 3 1 1 62 2 224712786 224712804 CATGCTTCGAGTATCCCAC 58 224712829 224712848 GCTTTCTGTTGAACATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064061.1 ENSRNOG00000045967 ENSRNOT00000072431 3 1 1 60 6 62797542 62797562 AAGGTGGTAGAGGACATTGAG 59 62797502 62797522 CATCCTGTTTAAGCCAAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060631 ENSRNOT00000080432 2 1 1 61 1 147139461 147139480 TGGAATGATACAGATTGGCA 57 147139419 147139438 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060392 ENSRNOT00000088913 2 1 1 61 17 31777160 31777180 ATCAGTGCTGTATCACATGTG 59 31777119 31777137 TGGGCAGACATAGTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052308 ENSRNOT00000081764 2 1 1 60 12 528315 528336 CTGAGTGAAACACAGATTACCA 58 528276 528298 CACTTGGTGGATTTAGATGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060238 ENSRNOT00000078722 1 1 1 60 8 126487477 126487496 CATGCCAACCAGAAGTACAC 59 126487436 126487457 AATGGTTGAGTTATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053558 ENSRNOT00000079317 3 1 1 60 17 68027426 68027447 TACTGTGTCATATGCACATGAG 58 68027466 68027486 AGTCTGGACACAGACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027736.1 ENSRNOG00000045861 ENSRNOT00000074836 3 1 1 60 17 42895331 42895351 TAGTTCAGCTGTTCGATCCTC 60 42895291 42895311 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053707 ENSRNOT00000081811 1 1 1 60 2 84254047 84254066 CACATCAATAGGTGGCAGAG 59 84254006 84254025 GCCCAAATGTCAGAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061724 ENSRNOT00000085314 3 1 1 60 2 62691069 62691088 CATCCATAGCAGTCTGACCT 59 62691028 62691047 AAACCAAGCAGTCAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053627 ENSRNOT00000081299 2 1 1 62 17 43932961 43932979 CATGGGATCTCCAACTGCA 60 43932917 43932935 ACTGTGATAACCTGGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.2 ENSRNOG00000060924 ENSRNOT00000087056 3 1 1 60 1 174134779 174134801 TAATCGAGACTAGAGTCACATCC 59 174134820 174134839 TACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059668 ENSRNOT00000086527 2 1 1 60 12 347052 347072 GATGAAGAATGCAGCTACCTG 59 347012 347030 TTCCATGATCAATGCGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051851 ENSRNOT00000083882 3 1 1 60 12 38654211 38654230 GATTACCCTTGGGATCCTCC 59 38654170 38654189 ACCAATTACCACGAACTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500473 ENSRNOG00000046529 ENSRNOT00000075994 1 1 1 80 5 77341447 77341468 GAGTGCAGGGAACTATATTTGG 59 77340700 77341408 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 3 2 4 80 19 17428778 17431014 AGCTCATGAATCTGGAACAC 58 17428717 17428736 GAAGAAGGCTGAACAGTTCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000055913 ENSRNOT00000087875 1 1 1 60 1 198019480 198019500 GGAAGTAGGAGTTGGAATAGG 57 198019440 198019459 TGCAATACTAGGTCGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA23 ENSRNOG00000057923 ENSRNOT00000087551 3 1 1 61 1 174684274 174684297 TAGTTGTCATCTATGTCTGGTAGC 60 174684315 174684335 GGATAGCAAGATCTGAATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076368 2 1 3 61 2 121357875 121390079 CGAGTCCTCATGGATCCAC 60 121390104 121390122 AAGTGTTGTCTGGTGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059490 ENSRNOT00000083534 3 1 1 63 14 30129594 30129613 ATACCCTGAGTGAGGTAAGC 59 30129550 30129572 CGACTTATCAGTGAGTACAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054266 ENSRNOT00000091090 3 1 1 60 10 67489801 67489819 TGGCTATTTCTGCACTCAG 58 67489840 67489861 CTATCAGCCAAACACTATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105811.1 ENSRNOG00000052254 ENSRNOT00000084618 1 1 1 60 3 123810472 123810492 CAGTGTATAGAATGGTTGCCT 58 123810432 123810450 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 3 2 2 80 7 116558115 116559923 TTGTTGTGAGCTCTGTAAGAG 58 116558055 116558074 TCTCAGCAGTTTGAGAACTC 58 Novel Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 2 1 1 65 2 198601758 198601780 ATCCACAGAAACAAACCTTCAG 59 198601806 198601824 CCTGTGGTAAGGAATCCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030901.1 ENSRNOG00000055889 ENSRNOT00000084845 2 1 1 83 10 108391505 108392397 CCCTCAAACGGAAGAACCT 60 108392444 108392462 CGTATTTCCCATCAACGGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052288 ENSRNOT00000087816 2 1 1 60 14 43689395 43689415 ACTAGAATTGGAACCATCCTG 58 43689437 43689455 TTTGCATGGCTTCCTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058433 ENSRNOT00000085169 3 1 1 60 14 105497923 105497943 GTGTTACATGTCACATGTCAG 57 105497883 105497902 CACTGAGCATAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051689.1 ENSRNOG00000059910 ENSRNOT00000086557 1 1 1 60 3 19366495 19366518 CCCTAAACTCTGGATTTATGACAC 59 19366536 19366555 ACTGAAGCGATTTGGAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6 ENSRNOG00000010822 ENSRNOT00000076086 1 1 1 80 4 32375113 32377013 ACAAACACAGGTGAAGATATGG 59 32377053 32377072 TCATGTGGGTTACTACCCTG 59 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 1 2 3 80 9 4100376 4100398 AGGATATTAAGGACCCATCTTCC 59 4100435 4103349 AGCCACATAAAGGAACTTACAG 59 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000084331 3 1 3 108 9 4072912 4080823 ACACTAACTGTCTGCTTCTG 58 4081472 4081491 CTAGCTGCTGTAATCTGCTC 58 Novel Rattus norvegicus 81 AABR07029470.2 ENSRNOG00000058024 ENSRNOT00000082896 2 1 1 60 10 29806973 29806991 AAGCGAAAGAACCAGAGAC 58 29807012 29807033 TGTACTGTTCAATTTCAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061066 ENSRNOT00000079835 2 1 1 60 2 153324385 153324406 GAATGATACAGGGATTAGCACG 59 153324346 153324365 GAACACTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028157.1 ENSRNOG00000054189 ENSRNOT00000077338 2 1 1 89 17 57907200 57907218 GAGCAGATGCCAAGTACAC 59 57907286 57907492 TGTATCGAGTGGGACTGTC 59 Novel Rattus norvegicus 81 SNORD14 ENSRNOG00000057762 ENSRNOT00000077873 2 1 1 60 1 185329793 185329811 ATGGTGTTCCAACATTCGC 59 185329835 185329853 AGGAAGGTCTACCCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968,ENSRNOT00000076937,ENSRNOT00000041963 1 3 3 80 X 65425918 65430831 GATGATGGAGAACACGCTG 59 65425856 65425876 GGTCAAATCCAACTGAATGGT 59 Novel Rattus norvegicus 81 Tbc1d8b ENSRNOG00000054011 ENSRNOT00000080072 2 1 1 80 X 110956447 110957991 AATCGTCGAATCATTGGTGC 59 110958034 110958052 GTCTGTCAGCTGAGGAAGG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051865 ENSRNOT00000085969 2 1 1 60 2 148386228 148386246 GGAGTTCTGGGCTGTAGTG 60 148386186 148386206 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054629 ENSRNOT00000077811 2 1 1 60 10 46193754 46193772 CCTGGAATAGGCTGACCTC 59 46193712 46193731 ACAAACTATGCAGCCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051926 ENSRNOT00000084810 2 1 1 60 14 43500156 43500174 AGGGCAATATGGCTGAGAC 60 43500197 43500216 AGATCAGCTGACTCAACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070456.1 ENSRNOG00000014383 ENSRNOT00000019269 1 1 1 121 8 70908968 70908987 TTCTGCTATGACCCAGGTG 59 70908865 70908883 GTCTTCTGGAATTCGCCAC 59 Novel Rattus norvegicus 81 AABR07054334.1 ENSRNOG00000048734 ENSRNOT00000073448 2 1 1 60 3 148589621 148589639 ATATCTCTGTGACTCCCGG 58 148589663 148589681 AGTTTGAGGCTAGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000054612 ENSRNOT00000084408 1 1 1 60 3 4094131 4094150 GAGGCTATGTCTACGCTCAG 60 4094090 4094111 TGTCAGGCTACAAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058199 ENSRNOT00000089692 1 1 1 65 17 73715997 73716015 ATGAGGTTTATCCGAGGCA 59 73715950 73715971 CACAATGTTTACATGTATCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006866.1 ENSRNOG00000055976 ENSRNOT00000078379 1 1 1 172 1 261073539 261073557 TACAGCTACACGCAAAGCT 60 261073697 261073715 TAGGTTGTTAGCTGCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006866.1 ENSRNOG00000055976 ENSRNOT00000078379 3 1 1 173 1 261073539 261073557 TACAGCTACACGCAAAGCT 60 261073698 261073716 CTAGGTTGTTAGCTGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 SCARNA4 ENSRNOG00000054885 ENSRNOT00000088414 2 1 1 63 14 17128376 17128394 GCAACAAAGGGTTGGAGAG 59 17128331 17128350 GTAATACAGTCAGCCCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094647.1 ENSRNOG00000055176 ENSRNOT00000078000 2 1 1 60 1 251600525 251600545 GTCAAAGAAGCTGTGAAGGAG 59 251600485 251600506 CATATGCACAGTCAATATGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060641 ENSRNOT00000078084 3 1 1 60 14 92805281 92805299 GTGTCAGTATGTGGCAGAG 58 92805239 92805259 GTTGTAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 3 1 1 82 4 101645799 101646199 CTAATGCTCTGGATCCAGGA 59 101646244 101646262 GATTGTCCAATGGCAACCG 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059774 ENSRNOT00000092077 3 1 1 60 12 6348687 6348706 CATCATTTGCAAAGCTGCAC 59 6348646 6348664 GGACCATAGACGAGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 1 1 1 73 1 165284444 165284466 CCACTGATATTTCTAAAGCCGA 58 165284500 165284518 GTAGAGCAGGAAAGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 1 1 1 64 5 107288841 107288863 GAAAGAAGCCACCAGTTGC 60 107288795 107288813 TTTGAGTGCCAAAGAGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013701.2 ENSRNOG00000058696 ENSRNOT00000080311 1 1 1 60 2 251534574 251534592 TTGGGTATAGCAGTAGCCT 58 251534614 251534634 CCTTGTGGTTGGATAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000061305 ENSRNOT00000082966 1 1 1 76 17 61052824 61052842 CTTGTCCTTTGAGCTACGG 58 61052766 61052784 AAATCTTCCTCACAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061964.1 ENSRNOG00000057550 ENSRNOT00000090279 1 1 1 60 4 155206291 155206311 TCAGGTTTCTCTTTGAAGGTC 58 155206333 155206351 ATTCCCAGTTCTTTCGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054299 ENSRNOT00000087047 1 1 1 60 2 182944426 182944447 CTCTTCAGTCAAGGATACATGG 58 182944468 182944486 TGAGAGGTTGTTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054851 ENSRNOT00000081083 1 1 1 60 2 197209917 197209935 GATGAAGAACGCAGCTAGC 59 197209956 197209977 GTCCATTATCAATGTGTCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000052744 ENSRNOT00000086241 2 1 1 60 2 146467032 146467052 TTGCCATTGATGATCGTTCTC 59 146467074 146467092 CACTCAGACTGTGTTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Foxred1 ENSRNOG00000060379 ENSRNOT00000091308 3 1 1 80 8 36407046 36408061 AATGTGAGAATGCAAAGGCAG 60 36406986 36407006 CATCCAGGGAAACTTGTTCTG 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056093 ENSRNOT00000092185 2 1 1 60 2 22157943 22157961 ACTAGAGCTTGCAACAGAC 58 22157982 22158003 CAAGAAGGATAGCCACTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043453.1 ENSRNOG00000053751 ENSRNOT00000083821 1 1 1 80 19 28665647 28666844 CATGAAGAACAGGCCACAC 59 28665585 28665603 AGAATTGACATGACCGCCT 59 Novel Rattus norvegicus 81 SNORA27 ENSRNOG00000058033 ENSRNOT00000081251 3 1 1 65 12 9997685 9997703 CATTGGCCATTCAAGTGGG 60 9997638 9997659 GACAAACACTTAAGTTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059523 ENSRNOT00000083202 1 1 1 60 3 61529591 61529610 GAACGACACAGAGATTAGCA 58 61529631 61529651 GAATGCTTCCTGACTTAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061052.1 ENSRNOG00000056290 ENSRNOT00000086827 1 1 1 60 4 103258113 103258131 GTCCAGATGACCCAGTCTC 59 103258071 103258091 TGATGGAAACACTTTCTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054570 ENSRNOT00000085209 2 1 1 62 14 84570599 84570617 AAACTTGCTCACAACCTCC 58 84570640 84570661 CATCGATACTGGGCTTATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057595 ENSRNOT00000083904 3 1 1 61 1 206801979 206801998 ATGAGGTTTATCAGAGGCGT 59 206801937 206801959 GGTAGATGTCATCTAACTCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060672 ENSRNOT00000081361 1 1 1 60 14 113503212 113503232 CTGCCATGTTACATGTACGTC 60 113503172 113503190 CTGAGCATAGCCATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061332 ENSRNOT00000078107 1 1 1 92 14 21557846 21557865 CAATGAGGTTTATCCGAGGG 58 21557773 21557791 GCTGTGTAAGGTAGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061332 ENSRNOT00000078107 2 1 1 93 14 21557846 21557865 CAATGAGGTTTATCCGAGGG 58 21557772 21557790 TGCTGTGTAAGGTAGGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.4 ENSRNOG00000046914 ENSRNOT00000072529 1 1 1 60 1 121227142 121227160 ATCTGATCAGTCAGGCTGC 60 121227100 121227120 TTTGGTTATACCCAGGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.4 ENSRNOG00000046914 ENSRNOT00000072529 2 1 1 60 1 121227144 121227162 AGATCTGATCAGTCAGGCT 58 121227102 121227120 TGGTTATACCCAGGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003049.1 ENSRNOG00000037364 ENSRNOT00000056539 2 1 1 60 1 94988534 94988553 TCAACTGCTGTATTGCAGAG 58 94988576 94988594 ATACTTCGGTCAATCCGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0026.4 ENSRNOG00000059066 ENSRNOT00000089400 1 1 1 81 20 2589711 2602374 CTCCTTGAGGATATTTCTCCCT 59 2589651 2589669 AAATGACTGCAGTCTCCCA 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058640 ENSRNOT00000089681 3 1 1 60 1 184495597 184495615 GCTTGCATTCTGAAGCTCC 60 184495637 184495657 GTCTTCTCTTGAGAAGGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059275 ENSRNOT00000077115 3 1 1 63 2 5855378 5855396 GAGTTCTTAGGTGGCAGAG 57 5855333 5855354 ATGTTCATAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036145 ENSRNOT00000054268 2 1 1 60 14 89011324 89011342 TGATCTCGGAAGCTAAGCA 59 89011364 89011384 ATTGTTACATTCTCCCAGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059739 ENSRNOT00000091549 1 1 1 60 1 82671586 82671607 TAAGTCAGTTGTTCTCAGTCAG 58 82671547 82671567 GCGAGAAGGAGAAGTATAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028381.1 ENSRNOG00000055638 ENSRNOT00000080328 1 1 1 80 17 67207920 67207938 TACAAGTGTCCTGTGAAGC 57 67207985 67208003 CTACCAACTCCTTCATGCG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056872 ENSRNOT00000081231 3 1 1 62 14 77966041 77966059 GTGTAGGTCAGTAGGTGGC 60 77965997 77966015 CACAGTTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053951 ENSRNOT00000089926 1 1 1 64 10 111097588 111097606 GAGAAGGGATTAGCATGGC 58 111097542 111097560 TAAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055074 ENSRNOT00000082472 1 1 1 60 6 80132283 80132301 GGAATAGGAGCTTGCTCCA 59 80132322 80132343 TTCCTGGAAATACTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD107 ENSRNOG00000058701 ENSRNOT00000081554 1 1 1 61 1 195072351 195072369 TGACATGGGACCTTGTCTG 59 195072308 195072329 ATTTCAGAGTCACTCTAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA30 ENSRNOG00000056939 ENSRNOT00000088627 2 1 1 60 1 198974371 198974391 CTTGATTACATCCTTGCCCTG 59 198974413 198974431 TGTTCCCTTGAGTAACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA30 ENSRNOG00000056939 ENSRNOT00000088627 3 1 1 60 1 198974372 198974391 TTGATTACATCCTTGCCCTG 58 198974413 198974432 CTGTTCCCTTGAGTAACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004743.1 ENSRNOG00000050403 ENSRNOT00000074311 3 1 1 60 1 153772137 153772155 CATGCATATGGGTGTGGAG 58 153772177 153772197 AGTGGAGACCAATAGAAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009786.1 ENSRNOG00000036430 ENSRNOT00000054542 2 1 1 60 2 112289686 112289708 GTTGCCTAAGAAATCCTTCTCTG 60 112289728 112289746 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017236.1 ENSRNOG00000057837 ENSRNOT00000092092 2 1 1 80 15 18941499 18941517 TACTGCAGACACAAGTGCT 59 18941560 18949300 TTTGCATACCTTCGATCGTC 59 Novel Rattus norvegicus 81 Cylc1 ENSRNOG00000056740 ENSRNOT00000086866 1 1 1 85 X 82295540 82297038 CATGTTAATCCGTCAAACTAGG 57 82297082 82297102 TCTTCATATCTGGCATAGGTG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000051626 ENSRNOT00000080980 3 1 1 60 4 31165152 31165174 GATACAGAGAAGATTAGCATGGC 59 31165194 31165212 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052149 ENSRNOT00000081283 3 1 1 63 4 22629820 22629838 CTAGTGCACTGACATCTGC 58 22629775 22629794 CCTACCACAAATCATACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113773.2 ENSRNOG00000058178 ENSRNOT00000090224 1 1 1 180 1 255170889 255170909 GCTGCTGGCAATTATTTATGC 59 255169018 255170460 TCTTTCCTTACCTCCCTTTCC 59 Novel Rattus norvegicus 81 AC126292.3 ENSRNOG00000056532 ENSRNOT00000079236 3 1 1 60 5 135628606 135628624 AACATTGTAGAAGCCGCTG 59 135628564 135628584 CATAAGTGTCAAAGACGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059457 ENSRNOT00000080661 1 1 1 62 5 150492360 150492378 CCATGGGATCTCCAACTGG 60 150492316 150492334 CTGTGATACCTGGGCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060357 ENSRNOT00000078510 3 1 1 60 5 4705579 4705598 TGGTTGGGCTGATATGACTG 60 4705538 4705556 GTGCACATAGAACAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066529.1 ENSRNOG00000048462 ENSRNOT00000072501 2 1 1 80 9 10789388 10789408 TACAGTTGGGAGTTAACAACC 58 10789449 10789469 AAGGTTTCTCCAACTCAGTC 58 Novel Rattus norvegicus 81 SCARNA2 ENSRNOG00000051850 ENSRNOT00000082978 1 1 1 60 2 211344059 211344077 GATCAGATAGACGAGGCCG 60 211344017 211344035 TCAGATCAGAATCGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059634 ENSRNOT00000088166 2 1 1 60 1 220109366 220109384 CTGGAACTCCTTGAACCTG 58 220109324 220109342 TGGGTCTGCACATTCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054674 ENSRNOT00000091274 2 1 1 60 2 1587397 1587419 GGAATGATACGGAGAAGATTAGC 59 1587439 1587457 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015941.1 ENSRNOG00000058474 ENSRNOT00000079300 2 1 1 61 14 86952049 86952067 CAAGATCTACGGAGGACGG 59 86952006 86952024 TAGAGCCTCTGCTGAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060997 ENSRNOT00000087770 1 1 1 60 5 69035766 69035788 CGATACAGAGAAGATTAGCATGG 59 69035728 69035746 AAGAGGTCATGAATTGGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099150.1 ENSRNOG00000052397 ENSRNOT00000078137 1 1 1 85 1 102924067 102924087 TCTACTGCGTTGGAGTCTG 59 102924138 102924156 TGGCTCTATAAGCGTCTGC 60 Novel Rattus norvegicus 81 AABR07021005.1 ENSRNOG00000025964 ENSRNOT00000011332 3 1 1 60 13 53067576 53067599 CAAATCTACGTATTCTTCCCTTCC 59 53067618 53067636 TGTCAAAGCCAGCTCTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060056 ENSRNOT00000085392 2 1 1 60 1 43982707 43982726 TGGCACAGAGAAGATTAGCA 59 43982748 43982767 AACGCTTCACAAATTTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052658 ENSRNOT00000083228 2 1 1 60 14 41255046 41255064 GCTATGTCACATGAGCCAG 58 41255085 41255106 AACACTGAGCATAGATACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044838 ENSRNOT00000070105 2 1 1 81 10 27204940 27204958 GTTTATGGCCATAGCACCA 58 27204877 27204895 TTCAAGTACAAACCAGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000060157 ENSRNOT00000082867 2 1 1 60 14 2861590 2861609 GCAAACTCGATCACTAGCTC 59 2861549 2861567 TCTAGCAAACCTGGTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053821 ENSRNOT00000085240 3 1 1 60 14 76840920 76840938 GACAAAGTCCAGAACCGGA 60 76840961 76840980 GTCATCCTTGTACAAAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000058488 ENSRNOT00000090800 1 1 1 60 6 23458893 23458912 AAACTGTGGTTCTGACTCAC 58 23458852 23458871 CACAGCCAAGGAATTGTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045148 ENSRNOT00000070415 1 1 1 60 14 9278933 9278951 TGATCTCGTAAGCTGAGCA 59 9278891 9278910 AATATGGTGACCTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD125 ENSRNOG00000051515 ENSRNOT00000082663 2 1 1 60 14 85277068 85277088 GATGATTCCTCTTCCTGAGTG 58 85277107 85277128 AGTCAGTTTCTTAGAGGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063288.1 ENSRNOG00000055030 ENSRNOT00000084708 2 1 1 61 6 27129392 27129412 TGAGTAGAAGACACCACATCC 59 27129351 27129369 CGGAGACCACCTAAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056534 ENSRNOT00000083400 3 1 1 60 5 120390265 120390283 GTGCTCAGCTAAAGAGGAC 58 120390306 120390325 TTGACCCTGATGGAAGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060363 ENSRNOT00000078777 3 1 1 60 1 143496629 143496650 ATTCAGTGAAGATTAGTCTGGC 58 143496669 143496689 GGATCTACTTTGCAGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053008 ENSRNOT00000091396 2 1 1 60 10 96050500 96050520 TCAAGGGTATACGAGTAGCTG 59 96050460 96050480 GTTTCTTGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056513 ENSRNOT00000091585 1 1 1 60 2 128817990 128818008 ATGGACACTAGGAACGCAC 60 128818032 128818050 CTCTCAGACAGGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059208 ENSRNOT00000090598 2 1 1 60 2 251978172 251978191 TACCCAGGAGGGAAGATACC 60 251978131 251978149 ATGCAGTGGATAAGCCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000071364 3 1 2 103 18 14931900 14935969 TTGATAAGGTAATCCCGGTG 57 14936035 14936053 CCCGTCATAGTTAGCATCG 58 Novel Rattus norvegicus 81 AABR07053504.1 ENSRNOG00000031161 ENSRNOT00000043677 3 1 1 60 3 111298759 111298781 CTCAGATGTATGATGGATCTCAG 58 111298799 111298819 ATTTCTGAATCATCCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000055387 ENSRNOT00000080795 1 1 1 68 1 85407597 85407615 TGAACCAGTGGACAAAGAC 58 85407547 85407565 CAATGAGTTCTGGGTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050282 ENSRNOT00000072389 1 1 1 80 1 199004157 199004175 CGCTATGCCATGAAGTTCC 59 199004218 199004347 TTCCACTTGTTCTTCTGCCT 60 Novel Rattus norvegicus 81 AABR07017745.2 ENSRNOG00000051843 ENSRNOT00000086842 3 1 1 86 15 30525791 30525941 TAATGTTTGGAGGAAGCAATGG 59 30525987 30526006 AGTTCACAGTCAAAGAAGCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052482 ENSRNOT00000082829 3 1 1 78 12 30182169 30182187 AGAGGCATTATGGGTGCAG 60 30182229 30182247 AGCATAGACATGGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060965 ENSRNOT00000089380 1 1 1 60 1 194086845 194086866 CACATGTATCAGTAGATGGCAG 59 194086806 194086828 AGATCAGAACACTGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060965 ENSRNOT00000089380 2 1 1 60 1 194086847 194086867 ACACATGTATCAGTAGATGGC 58 194086807 194086828 GATCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129004.1 ENSRNOG00000054543 ENSRNOT00000091916 3 1 1 80 1 168535647 168535668 GTACCTTCTAGTGCCCACAG 60 168535586 168535604 AAGAAACTCAGCACTCGGT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060282 ENSRNOT00000078813 1 1 1 60 12 23767288 23767310 CGATATTGAGGAGATTAGATGGC 59 23767329 23767348 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060282 ENSRNOT00000078813 2 1 1 61 12 23767294 23767312 TGAGGAGATTAGATGGCCC 58 23767337 23767355 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003537.1 ENSRNOG00000021484 ENSRNOT00000032154 2 1 1 60 1 114175212 114175231 CTATGTGGAATGCTCAGCTC 59 114175253 114175272 GATAGCCTCGTCAAACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047844.1 ENSRNOG00000047509 ENSRNOT00000073903 3 1 1 89 5 50372916 50372935 CGGTCGAGATCAAGAAAGGA 60 50372840 50372863 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258,ENSRNOT00000090885 3 2 2 86 13 96009580 96009602 GGACAGTATCCTGTCATATACAC 58 96009648 96017769 ATGAATGATCCAGGTTCCG 57 Novel Rattus norvegicus 81 AABR07061979.1 ENSRNOG00000053906 ENSRNOT00000047507 3 1 1 60 4 155702918 155702937 TCACAAGCTCATCCATGGAG 60 155702877 155702896 AATTTCTTTGAGTGCCCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040284.1 ENSRNOG00000059352 ENSRNOT00000085665 3 1 1 93 X 96863932 96864330 GATTCAGGGAACCAGTGGT 59 96864386 96864405 TGACTTGCAAGAGATGGAGG 60 Novel Rattus norvegicus 81 AABR07010476.1 ENSRNOG00000057358 ENSRNOT00000083443 1 1 1 80 2 137150779 137150799 GCAAATCAAACCTGTACTTGC 59 137148857 137150738 TTCTTCTGAACGAAAGGTGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056143 ENSRNOT00000087396 2 1 1 60 3 105751223 105751242 ATTTGCATCCCTACAGAAGC 58 105751264 105751283 GTAGCCCAGAAAGATTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051251.1 ENSRNOG00000056471 ENSRNOT00000078985 3 1 1 85 3 4106559 4107868 ATACTGAGCAGCTCTTAGGC 59 4107916 4107934 CAGTGGGTCCTTCCATCTC 60 Novel Rattus norvegicus 81 SCARNA15 ENSRNOG00000052910 ENSRNOT00000090248 2 1 1 60 2 188059525 188059545 AAGACTTTGCTGATACACTCC 58 188059567 188059585 TCTCCAATAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042623.1 ENSRNOG00000061644 ENSRNOT00000086313 1 1 1 80 19 359507 360696 ATCCAAGAACAACAGGCCA 60 360739 360758 ATTGACATGACCACCTCCTC 60 Novel Rattus norvegicus 81 Rn60_13_0847.2 ENSRNOG00000051248 ENSRNOT00000076861 3 1 1 82 13 79736656 79737033 CTGAATGGCTAATTGTAGCCA 59 79737075 79737095 GCCTGATTCAGTCTAATTGGT 58 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000055440 ENSRNOT00000080042 3 1 1 60 1 116761854 116761875 CAACAGAAAGTCAAGAACAGGA 59 116761815 116761834 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056991 ENSRNOT00000082565 3 1 1 61 2 82960164 82960182 GAGAAGATTAGCATGGCCC 58 82960206 82960225 CTCAATGGAATGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058479.1 ENSRNOG00000047414 ENSRNOT00000071132 2 1 1 69 7 118911586 118911604 GACAGCAGGAGTCAGTCTG 60 118911641 118911659 AACACTAGTCACAGTCGCT 59 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058363 ENSRNOT00000079604 1 1 1 60 1 16995777 16995797 TGATCTATCTGAGTGGGAAGG 59 16995817 16995837 CAGTATGTCAAGGCATCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004497.1 ENSRNOG00000041552 ENSRNOT00000063305 3 1 1 66 1 146824856 146824877 GACATTGGAAGAAAGAAGACTC 57 146824811 146824829 TCTAGCAGTCACTCAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0772.2 ENSRNOG00000057517 ENSRNOT00000086595 1 1 1 60 X 77193555 77193575 TGCTGTCACTTAGAACAAGAG 58 77193594 77193615 AGACACTACAAAGGAGAAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 3 1 1 64 X 147586539 147586562 TATCTACCCGAATACATTCGTG 58 147586496 147586517 GCTTATTATTTCCCAGATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07073367.1 ENSRNOG00000059923 ENSRNOT00000072278 2 1 1 68 8 19213169 19213187 CTCACTTGGCAGTTGTCTG 59 19213117 19213137 GGGAAACAGTAATTGAAGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORD89 ENSRNOG00000055019 ENSRNOT00000085682 1 1 1 60 9 46283325 46283343 CAACAGTTTGCTCTCCGTG 60 46283283 46283301 AGACAGTGACTCGCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000076576 2 1 2 80 13 84968734 84970074 CAGTACAGGTATCAAGAACACC 59 84968675 84968693 TCTAGTAATGCAGGGCACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058076 ENSRNOT00000078545 3 1 1 60 9 29505860 29505880 ATTGCAGATATGACTGCTCAG 58 29505902 29505920 AGAACACTGAACACAGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067234.1 ENSRNOG00000056702 ENSRNOT00000083699 1 1 1 75 9 35966446 35966464 AAATGTGATCGCTTCTCGG 58 35966497 35966521 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029742.1 ENSRNOG00000003214 ENSRNOT00000004285 2 1 1 80 10 48988102 48988122 CAGAAATGAAGTATGAGCCGC 60 48988163 48988183 CTACGCCCATACAGGTAAGG 60 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000051409 ENSRNOT00000083073 2 1 1 61 1 143065412 143065430 AGAGACTTTGACAGCCCAG 59 143065369 143065389 AAACATAGGAGAGCTGAGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060811 ENSRNOT00000079752 3 1 1 61 5 151858783 151858805 CGATACAGAGAAGATTAGCATGG 59 151858826 151858844 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051798 ENSRNOT00000078145 3 1 1 64 7 82496822 82496840 CTGAGGCGTGATTATTGCT 58 82496866 82496886 ACCTACCTGATGTTTAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056113 ENSRNOT00000080970 1 1 1 60 1 69630349 69630369 GCAATCTGGTTACAACATCTG 58 69630388 69630409 GTCACATTAACCGAATCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050321.2 ENSRNOG00000060181 ENSRNOT00000091640 2 1 1 119 5 161035118 161035136 GAGCTCAAGGTAGGGAGAG 59 161035017 161035035 CACAATGCAAAGCCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058578.1 ENSRNOG00000029243 ENSRNOT00000049445 2 1 1 60 7 125497177 125497196 CAGCTGACAGAAATGCTTCC 60 125497136 125497154 AACTGGTCAGACTGTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000057438 ENSRNOT00000077626 3 1 1 63 14 43587201 43587221 CCATCCTAATCTGGACCAGAG 60 43587158 43587176 AAACAAACAGGCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032385.1 ENSRNOG00000057933 ENSRNOT00000091026 1 1 1 60 18 63664946 63664964 ATGGCCAAGTCCATACCAC 60 63664904 63664924 TTCTTGATGCCATTTCTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 3 1 1 108 9 95346274 95346292 CATCATTTGCACAACCACC 58 95346362 95346431 CTTTGTTGATTTCCCAGAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC098563.1 ENSRNOG00000051917 ENSRNOT00000085652 2 1 1 82 1 215828336 215828360 CCTCCATCTTGTTTCTTCCC 58 215828273 215828291 GTGGGAAGTCTTCACAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056459 ENSRNOT00000081853 2 1 1 66 14 86398227 86398245 GTACTAGCACTGGAAGCAC 58 86398179 86398197 ATGAATTTGCACGTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032255.1 ENSRNOG00000028381 ENSRNOT00000033768 1 1 1 68 18 56965395 56965413 AATTCCCTTTGCGTGAGAG 58 56965340 56965358 TACAAGAAAGCCCACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055135 ENSRNOT00000080310 3 1 1 128 10 93386325 93386344 ATAAGCTCTGCTGTGATCAG 58 93386434 93386453 CACTACCACAAGTTACACGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052605 ENSRNOT00000090986 3 1 1 60 5 118553605 118553623 ACAGAGATTAGCATGGCCC 60 118553646 118553665 AAATATGGAACGCTTCACGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052611.1 ENSRNOG00000055689 ENSRNOT00000086517 1 1 1 81 3 66269056 66269074 TGATCAGTCTTGGGTGCAG 60 66269117 66269139 TAAGGTGTGAAACATTGCGTG 60 Novel Rattus norvegicus 81 ENSRNOG00000045960 ENSRNOT00000071366 2 1 1 60 18 29960640 29960660 AATCTCTGTTTCTTGTGCTGG 59 29960681 29960700 AATTTCACCTCCGCATTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061473 ENSRNOT00000088973 3 1 1 60 14 41243132 41243151 GGCTATGTTACATGAGCCAG 59 41243171 41243192 CACTGAGCATAAGATACAACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025048.2 ENSRNOG00000057966 ENSRNOT00000079010 3 1 1 86 16 26499896 26518824 GAATGAAGATGAGGACCTCCA 59 26518871 26518890 CTGTGTTCTTCCTCTGAGCA 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035293 ENSRNOT00000053416 1 1 1 60 6 114332886 114332906 TGATCTCAGAAGCTAAGCAGG 60 114332927 114332946 GAAAGTCTGTTCTCCCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056935 ENSRNOT00000078581 1 1 1 60 13 2838453 2838472 TTTGGACAAGGGTATACGAG 57 2838494 2838513 TTGAGAACTTGTTTGGAGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase3 ENSRNOG00000053457 ENSRNOT00000086535 3 1 1 60 15 28240867 28240888 CTTTCTGTAACCTCACAACTCC 59 28240828 28240852 CTTGTAGTTTGGTATCTACATTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032261.1 ENSRNOG00000024970 ENSRNOT00000033372 3 1 1 60 18 57444578 57444599 CGATAAGGTGAAAGTAAACGTG 58 57444539 57444559 CCCGTAGAACTTCTTGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055045 ENSRNOT00000080937 2 1 1 60 1 260993763 260993783 CCAATAAAGTATGGCTGGTGG 59 260993805 260993823 TGTGAGCTCAAAGCTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054444 ENSRNOT00000084406 2 1 1 60 20 47554073 47554091 CAGACTGGGCAGAAGAGAC 60 47554031 47554051 CTGTTCTATACTCCAGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115509.1 ENSRNOG00000049126 ENSRNOT00000071441 1 1 1 116 2 78633786 78633804 AAGACTCCCAGCTCAAAGG 59 78633882 78633905 CCAATCTATTTGGTCTGTAGGC 59 Novel Rattus norvegicus 81 AABR07058360.1 ENSRNOG00000044626 ENSRNOT00000069893 2 1 1 166 7 111756171 111756192 TCCTTACTTCACTTCCATATGC 58 111756314 111756337 CCCTATAAGAATTAGCTTCTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052715 ENSRNOT00000085532 3 1 1 60 4 96577070 96577088 GAGCTCTGTCTGTCCTCAG 59 96577028 96577052 GTGTTAGGCTACTAATCATTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059105 ENSRNOT00000085302 3 1 1 61 6 51659468 51659487 AATGAGGTTTATCCGAGGCA 59 51659426 51659444 ACATGGATGCAGAAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017798.1 ENSRNOG00000057267 ENSRNOT00000084286 2 1 1 83 15 31164445 31164637 GATTTGCTGGGTGAGAGGA 59 31164683 31164702 CATCTCAGAGCAGGATTGGT 60 Novel Rattus norvegicus 81 AABR07017798.1 ENSRNOG00000057267 ENSRNOT00000084286 3 1 1 84 15 31164445 31164637 GATTTGCTGGGTGAGAGGA 59 31164684 31164703 ACATCTCAGAGCAGGATTGG 60 Novel Rattus norvegicus 81 AC139392.1 ENSRNOG00000043550 ENSRNOT00000068817 3 1 1 64 6 22208107 22208125 TTCTCTGTGTAGCCTTGGC 60 22208061 22208079 CTCTAAGTTCAAGGCCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053563 ENSRNOT00000083084 2 1 1 60 3 20410591 20410611 AGTACAGAGAATTAGCATGGC 58 20410551 20410572 TGGAATGCTTCAAGAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094647.2 ENSRNOG00000056060 ENSRNOT00000084785 2 1 1 87 1 251633932 251633954 CACACTCAGAGACTCAAATACAC 59 251634001 251634019 GTGTATATGCATGCGTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000055094 ENSRNOT00000091248 1 1 1 60 3 129328815 129328833 GAGGACCAAGAAGGCTGAG 60 129328773 129328794 TTGTCTAGGAGGAGTGTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056116 ENSRNOT00000086334 3 1 1 60 3 143142626 143142644 TTGCACTCTGAATGTGCTG 59 143142668 143142686 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054211 ENSRNOT00000079512 2 1 1 60 4 63589452 63589470 GTCACGTGTGCATCATTGG 60 63589493 63589512 GCATAACACTGAGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059847 ENSRNOT00000080474 3 1 1 60 4 183569648 183569667 GGTACAGAGAAGATTAGCGC 58 183569607 183569625 TACACTTCAGAATCTGCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053830.1 ENSRNOG00000055829 ENSRNOT00000077755 1 1 1 60 3 129462760 129462778 GCTTTGTGGATCTCATGCT 58 129462800 129462820 ATCAAGTAGGCAGCATATAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.7 ENSRNOG00000061532 ENSRNOT00000084141 2 1 1 80 15 31533717 31533904 CAGATTTGCTGGGTGAGAG 58 31533948 31533966 CAGAGCAGGATTAGTTCCC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000057954 ENSRNOT00000082134 1 1 1 60 15 1315047 1315068 GTTGATTAAGTGAATCTGGCTG 58 1315008 1315027 ACATGGAGTAGTGAAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005028.1 ENSRNOG00000056820 ENSRNOT00000080423 3 1 1 94 1 175684054 175684073 CAATGTGTCCTTCCAAGGAC 59 175683978 175683997 GAAAGGAACACTGAGCAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060163 ENSRNOT00000086566 1 1 1 60 5 135496258 135496277 ACGACACAGAGAAGGTTAGC 60 135496299 135496318 AAGCTTCAGGAATTTGTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034753 ENSRNOT00000052876 3 1 1 60 3 51430621 51430640 AATGTGCCCATTCTAGTCTG 58 51430580 51430599 CCAAGTACTAGCTAGGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127191.1 ENSRNOG00000049325 ENSRNOT00000054636 2 1 1 60 7 11072742 11072760 TGGAAACAGTGACCAGTGG 60 11072700 11072718 GACTTCACTGTCTCTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058806 ENSRNOT00000079793 1 1 1 60 3 53529461 53529481 GTCATACTGCATCAGTAGGAG 58 53529497 53529521 GAACACTGAGTATAGTAGACATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030590.1 ENSRNOG00000045884 ENSRNOT00000073776 1 1 1 74 10 94982576 94982594 CTAGACGAGACACAGTGCA 59 94982520 94982538 GACCTTACAACTGCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060131 ENSRNOT00000087108 3 1 1 60 20 9465064 9465086 GTTAGAACGATACAGAGATCACC 59 9465026 9465044 CCTCTTGAATTTGCATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060457 ENSRNOT00000081998 3 1 1 60 4 115681857 115681875 TAATGATGGCATGCACTGG 58 115681899 115681917 AACAGGTCTCAGGAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.2 ENSRNOG00000053343 ENSRNOT00000085233 2 1 1 80 6 79235980 79236003 GAGATTTCACCTCACATGCG 59 79236045 79236064 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058772 ENSRNOT00000088410 1 1 1 61 1 19151175 19151198 GATACAGAGAAGATTAGCATGTCC 59 19151137 19151157 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060813 ENSRNOT00000091160 3 1 1 60 13 100452046 100452066 CTCTGAAGCTAAACAGGAGAG 58 100452006 100452026 CCAATCACTGTCATTCATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000055493 ENSRNOT00000083232 3 1 1 60 5 148502358 148502379 GGGTTAGAATTTGCAGTAACAG 58 148502319 148502339 TCATACATGACCACTGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053488 ENSRNOT00000085587 1 1 1 61 6 47841282 47841305 GGAACAATACAGAGATTAGCATGG 60 47841325 47841343 AACGCTTCACGAATTAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053664 ENSRNOT00000081363 1 1 1 75 18 83736453 83736471 TTATCCATTGCACTCCGGA 59 83736509 83736528 CCACAAATTATGCAGTCGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056399 ENSRNOT00000089704 1 1 1 60 15 73123737 73123755 ATGTGCACCAGTAGGTGAC 60 73123779 73123797 CGGGACAGAGTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA46 ENSRNOG00000057075 ENSRNOT00000080595 1 1 1 60 19 9729515 9729535 AACCTATGGATGGGAAATGTC 58 9729557 9729575 CCAGGAATTCTTCTCGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000057925 ENSRNOT00000086255 1 1 1 60 10 61753938 61753956 GTCTGAACCTGTCTGAAGC 58 61753977 61753998 TTAAGAGAAGTCTCAGAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000056426 ENSRNOT00000091170 2 1 1 60 20 45302003 45302023 GAGCAGGTAGCAATTACAGTG 59 45301963 45301982 CTTTCAGCAGGATTAATGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058844 ENSRNOT00000083584 1 1 1 60 19 44103802 44103825 GGAATGATGCAGAAACTAGTATGG 60 44103843 44103862 AGGCTTCATGGATTTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045175 ENSRNOT00000070442 1 1 1 60 10 8469929 8469950 CCTAAATGTACTGCATCTGCAC 60 8469968 8469989 TTCATGTACTAACTAGGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052058 ENSRNOT00000082842 3 1 1 60 7 12619436 12619458 GATACAGAGAAGATTAGCATGGC 59 12619398 12619416 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058868 ENSRNOT00000085157 3 1 1 60 18 38289288 38289306 GGATATGAGGACAAGCCAG 57 38289327 38289348 CCAAATCAACTCTGATGATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060504 ENSRNOT00000080592 1 1 1 60 18 48672953 48672971 GAGAAGATTAGCATGGCCC 58 48672995 48673013 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053782 ENSRNOT00000088817 2 1 1 60 5 106424819 106424838 GGAATACATGCTTGACATGC 58 106424861 106424879 GTGTTTGCCTATCTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052072 ENSRNOT00000082018 3 1 1 60 19 14012760 14012779 AGGTATGTCTGTCACATGTC 57 14012801 14012820 ACTGAGCATAGACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049541.1 ENSRNOG00000052771 ENSRNOT00000080647 3 1 1 90 5 127755630 127755795 TGGGAACTGGATAGAAAGGA 58 127755954 127755974 TGGTGATTAAGAAGAGACCAG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000052079 ENSRNOT00000087841 2 1 1 60 6 71960630 71960649 GATACAGGAGAAGATTGGCA 57 71960672 71960690 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052079 ENSRNOT00000087841 3 1 1 60 6 71960629 71960648 CGATACAGGAGAAGATTGGC 58 71960671 71960689 ACACTTCACGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002119.1 ENSRNOG00000055247 ENSRNOT00000082190 1 1 1 60 1 66638856 66638875 CGGATGTTGTTTGACTACCT 58 66638815 66638836 GCATATCTAAGTACTCCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.2 ENSRNOG00000055182 ENSRNOT00000083977 3 1 1 60 3 150303179 150303197 GACATTCTGCTTTCAGCCC 59 150303137 150303158 CCTTGTTCTTCTTGATCTCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052263 ENSRNOT00000086199 1 1 1 66 4 55633610 55633628 TTATCCATTGCACTCCGGA 59 55633562 55633580 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060083 ENSRNOT00000091214 3 1 1 60 18 40063410 40063428 ACATGAGTCAGTAGGTGGC 59 40063452 40063470 CAGGTCAGAACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030184.1 ENSRNOG00000057449 ENSRNOT00000077390 1 1 1 92 10 74762859 74762898 GGTATACAGAGGTTTCAGTGTG 59 74762951 74762969 AAGATCACAGACCTTGGCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059584 ENSRNOT00000082745 3 1 1 60 18 16136827 16136849 GATACAGAGAAGATTAGCATGGC 59 16136789 16136807 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057379 ENSRNOT00000077940 1 1 1 60 X 33333990 33334010 ACATCTGTCACCCTATTGACC 60 33334032 33334050 CAATTGTCTAGCCAGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056465 ENSRNOT00000090479 3 1 1 60 X 71346542 71346561 CCAAAGAATCTGTCTGGTGC 59 71346501 71346522 TTCATTTCTCTTTAGCTGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057317 ENSRNOT00000079352 2 1 1 60 18 81593950 81593968 CTTATCCATGGCAGTCTGG 58 81593908 81593927 TGAAGTTTCCTGCATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033920.1 ENSRNOG00000031634 ENSRNOT00000048199 3 1 1 60 11 44367477 44367495 CATCCGAAACATCAAAGGC 57 44367435 44367453 TTCTGACTCGAACATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679803 ENSRNOG00000051949 ENSRNOT00000082081 2 1 1 60 5 137635497 137635517 GATCTGTGGTTTCCTTTCCTC 59 137635457 137635476 ACAATATGGCAGACTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056510 ENSRNOT00000078301 1 1 1 62 18 3530016 3530034 ATGGCTTCCATGTCATGTG 58 3529972 3529991 GAGTGTACACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000051978 ENSRNOT00000084995 2 1 1 60 10 105648379 105648402 GCTAAGGATGATCTAAGTTATCCC 59 105648420 105648439 TAAACCGTGACTCTTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032453.1 ENSRNOG00000038592 ENSRNOT00000058869 1 1 1 60 18 66103940 66103958 AACCTTCCACCATCTTCGT 59 66103898 66103919 CATCTTCTTTAAGACAAGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054895.1 ENSRNOG00000061679 ENSRNOT00000081623 1 1 1 80 3 173249476 173249496 GATCCTTCTCAGAAGAGTCTC 57 173241539 173249436 TTCCCAAATGTAGCCTATAGC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053191 ENSRNOT00000080932 1 1 1 60 X 98935879 98935898 CACATGTGCATCATAGGTGG 59 98935838 98935859 AGTCAGAACACTGAACTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000057490 ENSRNOT00000082371 1 1 1 60 10 55950912 55950930 TATTTCCTGGGAGGTGGAC 58 55950870 55950890 CCTTTATTCTAGGCTCTGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035437 ENSRNOT00000053560 3 1 1 61 6 72181488 72181507 ATCTTGGAAGCTAAGCAGGG 60 72181446 72181464 GGAATTCCCAGGTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121471.1 ENSRNOG00000053656 ENSRNOT00000080873 1 1 1 80 4 163647787 163649512 AGACACAGAAATCACTCAAGG 58 163647727 163647745 AGTAACCTCCTGCTCACTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061296 ENSRNOT00000079804 2 1 1 60 18 39796069 39796087 CCCTAAAGGCATTGGAGGT 59 39796106 39796129 CTATTCTCTGTCACCAAGTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058828 ENSRNOT00000081385 2 1 1 60 7 13284706 13284725 AAGGGTAAAGGAAGTCTCCA 58 13284748 13284766 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058972 ENSRNOT00000089543 1 1 1 60 X 152670112 152670133 TGTTGTTCTCATATCAGTCAGG 58 152670152 152670172 TCAAGGTAGGATGAACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054766 ENSRNOT00000088295 2 1 1 61 15 76116726 76116744 AGTATGTGGCTGGGAAGAG 59 76116683 76116704 TATTCAAGTGTCCATAGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054010 ENSRNOT00000083717 1 1 1 60 1 131869371 131869389 GAGAAGATTAGCATGGCCC 58 131869413 131869431 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.5 ENSRNOG00000061647 ENSRNOT00000082576 1 1 1 100 6 139654369 139654472 TTTCAAAGCTGTGTCCTGTC 59 139654288 139654306 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 SNORA72 ENSRNOG00000058540 ENSRNOT00000089909 1 1 1 60 X 71048340 71048364 GCTCAGCACTGACTATATTAATGTC 60 71048304 71048327 TTATAATACCACACCTAGGTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060447 ENSRNOT00000082563 2 1 1 60 5 151016636 151016656 TAACATTGGAACGACACAGAG 58 151016677 151016696 GATTTGCGTGTCATCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044722 ENSRNOT00000069989 3 1 1 60 6 64116352 64116370 ATAGCACCCTGAACATGCT 59 64116310 64116330 CCAAGTACAAATCTGCTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000076019 1 1 2 112 17 13488438 13507860 GGGTTTAAGAGATGTCTTCCT 57 13516263 13516281 TACAACCTCATGCCAAAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060446 ENSRNOT00000078865 1 1 1 60 15 104930264 104930282 GAGAAGATTAGCATGGCCC 58 104930306 104930324 ACTATGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.2 ENSRNOG00000057563 ENSRNOT00000090911 3 1 1 111 1 92090532 92090551 GAAAGTGGCAAATGGGAAGG 60 92090439 92090459 TATGAAGCCCATTCCCACTC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000053454 ENSRNOT00000087446 1 1 1 60 4 11286572 11286591 GACTAGGGTTGGTATCACTG 57 11286614 11286632 CTGGGTGGTGAAAGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057334 ENSRNOT00000080378 2 1 1 60 1 124480798 124480820 CAGATCTAAGGAACTTGACTGAC 59 124480837 124480858 GGGAAAGCACTAATTCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056306 ENSRNOT00000081580 1 1 1 60 15 74724234 74724252 GTGCATCAGTATCTGGGAG 57 74724192 74724210 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055740 ENSRNOT00000087650 3 1 1 60 20 2971783 2971803 TCTGTCTACACATTGATCACC 58 2971821 2971843 ATCCTTAGAGCTAGTCAGATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056626 ENSRNOT00000077937 1 1 1 60 20 45224701 45224719 AGGCTACATCTACGCTCAG 59 45224737 45224761 GTGTTAGGCTACTAATCATTCAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053398 ENSRNOT00000080117 3 1 1 60 6 25261049 25261070 TGTTGTTCTTGTATCATCCAGG 59 25261089 25261109 ACTAGGATGAACAAAGGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054209 ENSRNOT00000090850 1 1 1 60 5 150526098 150526116 TCATCGCCTGCATATTCCT 59 150526056 150526074 TTTGTCTCCTCAGTCACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061658 ENSRNOT00000078352 1 1 1 60 11 33789904 33789922 AGGTTTATCCAAGGTGCGA 59 33789946 33789964 AGGCTGGAAACAAGTTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000056138 ENSRNOT00000088423 3 1 1 60 19 22964729 22964747 GAACTGAGCTAAGGCACTC 58 22964687 22964705 CTGAAGACAGGTCAGTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053071 ENSRNOT00000078240 1 1 1 60 5 120163898 120163916 GACTAGCTTTCTCACTGGG 57 120163938 120163958 CATAGTACCTAAGAAGCAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053071 ENSRNOT00000078240 2 1 1 60 5 120163898 120163916 GACTAGCTTTCTCACTGGG 57 120163937 120163958 CATAGTACCTAAGAAGCAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056152 ENSRNOT00000083734 1 1 1 60 19 51369789 51369807 CATGTGCATCTGTAGGTGG 58 51369831 51369849 AGGTTAGAACATGGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057382 ENSRNOT00000086227 1 1 1 60 18 15349861 15349885 GATTAAGAAAGTGATCTTCTCAGGG 59 15349902 15349921 GGATCAGCAAATCCCAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057382 ENSRNOT00000086227 3 1 1 61 18 15349908 15349926 GGATTTGCTGATCCCTGTG 59 15349949 15349969 TTATCACAGAATCTGCAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053980 ENSRNOT00000092010 1 1 1 60 11 3269630 3269651 TATATGGAGTAGCTGCCTTCTC 59 3269670 3269690 TTATGGTCTTCTCAAGAGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055052 ENSRNOT00000083053 2 1 1 60 9 115765965 115765983 GGGTAAATAGGAAGCCGTG 58 115766005 115766025 TCTATAATCTCCAGAGCTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014123.1 ENSRNOG00000054053 ENSRNOT00000090361 2 1 1 98 14 1501065 1502812 TAACGTGCAGAGTTCTGCT 59 1500985 1501008 GTAGCTAAGCTTATACCAAATCCC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000055848 ENSRNOT00000085783 3 1 1 60 18 29382426 29382446 CATCAAGAAGGTGGCTTTCTG 60 29382467 29382486 ATTCTAGAAGCCAGCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065010.1 ENSRNOG00000042752 ENSRNOT00000064247 3 1 1 60 6 103927608 103927627 CCAACACCAACAAGTCTCAG 59 103927567 103927587 TTCTTATCCAGGTAAGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0435.2 ENSRNOG00000053113 ENSRNOT00000083589 2 1 1 60 1 42133529 42133550 GAAGGTATAGCTGAAAGGTCAC 59 42133570 42133589 ACCTGTTGATGTGGATTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000057441 ENSRNOT00000082127 1 1 1 63 11 70601615 70601633 TTGAGTTCAGTTCAGGGCA 59 70601570 70601588 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000057112 ENSRNOT00000084213 1 1 1 61 11 68161353 68161371 CACAAGTTGGGCAGAAGTG 59 68161310 68161328 AAAGGCAGTTTACTGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125384.1 ENSRNOG00000059405 ENSRNOT00000078068 2 1 1 68 11 68687470 68687488 CAAAGGCAATTGCTTCTCG 58 68687420 68687438 CACCATGAGTGATTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054051 ENSRNOT00000085021 1 1 1 60 5 157277872 157277892 GAGATACCATGGTCATGAAGG 58 157277832 157277856 CAGAGTACAATAATGGATAAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057257 ENSRNOT00000082074 1 1 1 60 4 53658042 53658063 GATACTGTGAGCAGAGAAATGG 59 53658003 53658023 ACATCTCACATGCAATAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.2 ENSRNOG00000061320 ENSRNOT00000009419 3 1 1 60 7 29949350 29949368 ACATGATCAAGGGTGTGAC 58 29949308 29949326 AAGTGAGCATACACAGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 2 1 1 65 3 154986185 154988857 GATTCAAAGGAAGATGATTCGG 58 154988883 154988901 CTCAGATGGTCCTTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD67 ENSRNOG00000052617 ENSRNOT00000086512 2 1 1 60 3 80506702 80506723 CCATAGTATCAGGTGATACAGG 57 80506744 80506762 TGTGCACTTGGTTTGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD67 ENSRNOG00000052617 ENSRNOT00000086512 3 1 1 60 3 80506672 80506690 GTGAGAGTGATGAGTTGCA 58 80506714 80506732 TGAGTGGTGCCTGTATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056172 ENSRNOT00000084761 2 1 1 60 5 91135019 91135037 GATGAAGAACGCAGCTAGC 59 91135059 91135079 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034772 ENSRNOT00000052895 2 1 1 60 19 42305953 42305971 ATCTCGGAAGCTAAGCAGG 59 42305911 42305932 AATTGTGTACTATCTCCCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053132 ENSRNOT00000080136 2 1 1 60 5 142878752 142878770 AGGGAAGATCAGTGTGGTC 59 142878794 142878812 ATATGCAGCATCCCTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021220.1 ENSRNOG00000058486 ENSRNOT00000091496 2 1 1 86 13 61363616 61363634 GGTAGCACAAAGTGAAGCT 58 61363686 61363705 ACTACCGGTTTGAACAACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067441.3 ENSRNOG00000052328 ENSRNOT00000080060 2 1 1 60 9 45741812 45741831 GTCGGCAATTTGTAAAGGAC 58 45741771 45741790 TTTCTATCAGGTTTGGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059360 ENSRNOT00000079652 3 1 1 60 4 25065763 25065783 CTTCTCTGAATGTGCTGACTC 59 25065803 25065823 AGTTATGCAGTAGCATTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068980.1 ENSRNOG00000057314 ENSRNOT00000075124 3 1 1 60 8 4220247 4220267 AACCATTACAGAGTTCTGCAC 59 4220289 4220307 ATACCTGGTACCTGCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.3 ENSRNOG00000049551 ENSRNOT00000072648 1 1 1 80 19 30820136 30821797 GTGACAATCCATGCATGCA 59 30820074 30820092 GATGGTCACTGGACTCGAC 60 Novel Rattus norvegicus 81 AABR07003944.1 ENSRNOG00000057110 ENSRNOT00000083396 2 1 1 82 1 121471314 121471534 CGGGACCACAGAAATAGCA 60 121471250 121471268 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058838 ENSRNOT00000090189 1 1 1 60 11 88403713 88403734 AGGCTATGTCTACATTCAAGCA 60 88403752 88403773 TGTTAGGCTACTAAGCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065768.2 ENSRNOG00000054688 ENSRNOT00000086301 2 1 1 126 6 140418651 140418670 ATTTAAATCCCGACTGAGCA 57 140416677 140418562 CTCCCATTTCCTCACTGTG 58 Novel Rattus norvegicus 81 AABR07008298.1 ENSRNOG00000054825 ENSRNOT00000077415 2 1 1 60 2 52618763 52618781 AACCCTCACCAAACTTGCT 60 52618721 52618740 TCTCCACCATGACAGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131806.3 ENSRNOG00000058218 ENSRNOT00000090787 1 1 1 60 19 22748476 22748495 CCCTTCACTGGTAATGTCTC 58 22748435 22748453 TCATCTTCGTCACAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058201 ENSRNOT00000091590 1 1 1 62 7 122824372 122824393 CTGCACATACACTAAGATTGGA 58 122824416 122824434 TGTCAATCCTTAAGCAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034425.1 ENSRNOG00000051745 ENSRNOT00000079347 1 1 1 60 11 71078313 71078331 CCTAGCTGTCCTGGAACTC 59 71078354 71078373 GGTGGATCTCTGTGAGTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001880.1 ENSRNOG00000060596 ENSRNOT00000015370 3 1 1 74 1 60846713 60846731 ATGATTCCTGGGCACTCAG 60 60846654 60846672 GCAGTTCTTGGCTAGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051887 ENSRNOT00000084108 3 1 1 60 7 3872882 3872902 GTGATCTGACTGAGACATCTG 58 3872842 3872863 CAGATAAGCAGCTCAATCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059813 ENSRNOT00000085313 3 1 1 60 4 53658736 53658756 ATACTGTGAGCAGAGAAATGG 58 53658696 53658717 CACATCTCACATGCAATAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000058579 ENSRNOT00000077287 1 1 1 60 5 65988733 65988754 AGTTGAAGGTTCATTAGCAGAG 59 65988775 65988793 TTGTCTGAAGGGTACTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115384.1 ENSRNOG00000058613 ENSRNOT00000090425 1 1 1 85 8 43705625 43705644 CCTATCAAGTCTGTTCCTGG 57 43705692 43705851 TAGCATGCAGACTGTTGTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000055607 ENSRNOT00000078606 2 1 1 62 6 76800709 76800731 GGAGCAATACAGAGAAGATTAGC 59 76800669 76800689 CGCTTCATGAATTTGCATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA17 ENSRNOG00000061205 ENSRNOT00000081598 3 1 1 60 18 70733441 70733462 TTTCCTTATATGATCAGGCCTC 58 70733402 70733420 TAATCCTCTCAGGCTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055944 ENSRNOT00000077615 1 1 1 60 9 45559733 45559751 AGGAAGATTAGCATGGCCC 60 45559691 45559710 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057743 ENSRNOT00000080777 2 1 1 60 4 156529815 156529836 ATGTATGTCAGTAATTGGCAGG 59 156529855 156529875 TTCCTAGGTCAGAACATTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057743 ENSRNOT00000080777 3 1 1 60 4 156529816 156529836 TGTATGTCAGTAATTGGCAGG 58 156529855 156529876 GTTCCTAGGTCAGAACATTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052812.1 ENSRNOG00000042248 ENSRNOT00000066227 3 1 1 93 3 76485148 76485166 AAGCTCATGAACCAACCCA 60 76485071 76485094 AATCAATCAGGTTTGGTGTCAC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060397 ENSRNOT00000084301 1 1 1 62 11 16763469 16763487 GTGTCAGTAGGCAACAGAG 58 16763513 16763531 CGTTCATAGGTGGGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056109 ENSRNOT00000086079 1 1 1 60 11 63981481 63981503 CGATACAGAGAAGATTAGCATGG 59 63981443 63981463 GAAGCTTCACAAATTTGCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059998 ENSRNOT00000077330 1 1 1 61 4 145111179 145111200 GCACATCTACTAAACTTGAAGC 58 145111221 145111240 TGTGTCATACTTGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 2 1 1 72 1 99888436 99889262 CTCAGCATTGGCATCAGTG 59 99889298 99889316 AAGGAAGTAGCTGAGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064711.1 ENSRNOG00000046064 ENSRNOT00000071048 3 1 1 60 6 91332193 91332215 CCTCTTTGGTTATTTCCTGAGTG 60 91332233 91332253 GAATTTGTCTATTGTGGCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057508 ENSRNOT00000077779 3 1 1 62 9 43323786 43323806 CCAATGAGGTTTATCTGAGGC 59 43323830 43323848 CAGAAGAGGGCATCAGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011733.1 ENSRNOG00000061317 ENSRNOT00000089083 3 1 1 60 2 167607522 167607542 ACACATGGAAATAACCCTGGA 60 167607482 167607503 TGTATCTACAGCTCCTTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052171 ENSRNOT00000079301 3 1 1 77 6 137908015 137908034 CCAATGAGGTTTATCCGAGG 58 137907957 137907975 GTTCCTTTGTTGTGGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061586.1 ENSRNOG00000036454 ENSRNOT00000054565 2 1 1 60 4 134985219 134985237 GGCTATAACCAGCACAGAC 58 134985260 134985279 TGCTCAAAGAGATACTCACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014289.1 ENSRNOG00000058935 ENSRNOT00000089496 2 1 1 106 14 7500423 7500444 TCTACAGATTCAATGCAATCCC 59 7500513 7500531 AGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061512 ENSRNOT00000087343 1 1 1 60 9 57021976 57021994 GCTGTATCACATGAGTGCC 59 57022017 57022036 TACTGAGCTTTGACATAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012133.1 ENSRNOG00000047188 ENSRNOT00000073126 2 1 1 60 2 186932725 186932743 CAGAAGAGGCCTTCATGGA 59 186932683 186932703 TCCAATTCATAGGTGATGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054599 ENSRNOT00000085128 3 1 1 60 7 78697934 78697957 GGTGATGGTGTTCTTATATCAGTC 59 78697973 78697994 CTCAGATAAACAAAGGACTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043952 ENSRNOT00000069219 1 1 1 60 9 50874810 50874829 AGCCCAGGATCATTAATCTG 57 50874769 50874790 CCCAATGCAAGTATTAAACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054564 ENSRNOT00000084102 2 1 1 61 4 101074717 101074736 GAATTCTGCTCCTATGCACC 59 101074675 101074693 TGTCTCCTCAGTCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064999.1 ENSRNOG00000038335 ENSRNOT00000058373 1 1 1 60 6 103823669 103823688 GGAAGACGATCAGGAATGAG 58 103823709 103823729 CTCTCCTTCTCCTTCAACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000733.1 ENSRNOG00000058047 ENSRNOT00000077927 3 1 1 80 1 24855728 24855748 TTAGAGATGGAGAACACTGTG 57 24855039 24855686 GCTGAGCAGGTTTCTAGAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056239 ENSRNOT00000088700 3 1 1 60 4 33537185 33537205 AGAGTTGATTCAGACTGTCCA 59 33537145 33537163 ATGGGATGTTGAAGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076566 2 1 3 69 20 44606482 44606500 CCTACTGCTGTTAGTGCCA 59 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036642.1 ENSRNOG00000050192 ENSRNOT00000071941 3 1 1 60 12 51674416 51674436 AGATGGATTGTGTAGATGAGG 57 51674376 51674395 TTAGCACTTGATAAGTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068674.1 ENSRNOG00000057758 ENSRNOT00000085481 3 1 1 83 9 114326835 114326855 ACAGTTCCCATAGAGAAGAGG 59 114324852 114326793 AGGTGACAAAGTTAGTTCAGAC 58 Novel Rattus norvegicus 81 AC141966.1 ENSRNOG00000021435 ENSRNOT00000029099 3 1 1 60 9 98601405 98601425 AGAAAGAGATGCAACTTACCC 58 98601365 98601385 AATACAGGAGAGTGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096792.1 ENSRNOG00000054624 ENSRNOT00000085280 3 1 1 80 7 133116527 133116546 TACGAACTCAACATCAGCAG 58 133117514 133118004 GTTGTCACTGTAATCATGGCT 59 Novel Rattus norvegicus 81 AABR07009538.1 ENSRNOG00000038752 ENSRNOT00000059203 2 1 1 93 2 102301585 102301607 AATAAACCGCAAGGTTCAGTC 59 102301512 102301533 GGTCAGCGCTGATTAATAAGTG 60 Novel Rattus norvegicus 81 AABR07025689.1 ENSRNOG00000059294 ENSRNOT00000087704 3 1 1 80 16 46028004 46028025 AGAGATCACCCTTGGATTTCC 60 46028064 46028085 TATAGAGCACATACCACAAGGG 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000059194 ENSRNOT00000090683 1 1 1 60 8 40302974 40302996 GGAGACAGAATGGTAGACTAAGG 60 40302936 40302958 CAATTTCAGGTCCTTCCATAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD82 ENSRNOG00000055464 ENSRNOT00000089999 3 1 1 60 9 93374091 93374113 CAAGTGATGACTAACAAAGGGAC 60 93374053 93374073 AGCATACTGCATTTCAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024725.1 ENSRNOG00000051457 ENSRNOT00000077513 1 1 1 80 16 12741161 12741179 GCCTTTCTGTCCACATACC 58 12737054 12741119 TGTGAAGTGTGAATACCTCAG 58 Novel Rattus norvegicus 81 ENSRNOG00000061764 ENSRNOT00000082700 1 1 1 80 13 92669953 92669977 TCTCTTCCCAGGAAATAGGTC 59 92670024 92670042 GGAAAGTGGAGAGGAGGTG 59 Novel Rattus norvegicus 81 AABR07026004.1 ENSRNOG00000058010 ENSRNOT00000091231 2 1 1 82 16 58852361 58852418 CAGATCAGAGAACAGCTACAG 58 58852464 58852482 ATACATCGTCTTGCCTGGA 59 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 3 1 1 71 9 43488601 43488620 ATGAGTCCCTCTTCATCCTG 59 43488544 43488570 AAGAGGATTCCACAGATAACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009965.1 ENSRNOG00000053688 ENSRNOT00000079431 2 1 1 73 2 118746508 118746526 CCCGGGATACCTTCAAGAG 59 118746564 118746582 ACATGCAGAAGGTACAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071223.1 ENSRNOG00000037129 ENSRNOT00000056005 3 1 1 60 8 105526640 105526658 TCTGTGTAGCCTTGACTGC 60 105526682 105526700 TCTTAGTTCAAAGCCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054384 ENSRNOT00000082178 3 1 1 60 8 55307072 55307091 TCCTAACACTGGAACAACAC 58 55307111 55307132 GCTTGCATGGCATAATTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051373 ENSRNOT00000088296 1 1 1 60 13 30630861 30630881 GTGGCAGTTGAATCATATGTG 58 30630821 30630843 GCATGAACATATCACCTCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057805 ENSRNOT00000090300 2 1 1 60 8 132251912 132251930 TGTGTTGCATGTGCATCAG 60 132251952 132251972 AACACTGAGCATAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000051521 ENSRNOT00000083265 3 1 1 65 8 13870804 13870822 CATTTGCTGTGGACATGAC 57 13870849 13870869 GCTACTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070238.1 ENSRNOG00000022382 ENSRNOT00000036260 2 1 1 60 8 60618806 60618824 GGTCTCATCTTGCTCTGCT 60 60618950 60618969 TGAATATGAAGAGTGCAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000058443 ENSRNOT00000088513 2 1 1 64 8 92174897 92174915 TATCCTTTGCACTTTGGCT 57 92174943 92174961 TTTGAGGCTGAGTTTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.7 ENSRNOG00000053720 ENSRNOT00000089726 1 1 1 60 20 4983684 4983706 CCTATAATACCTCTATCTGCCTC 57 4983646 4983667 CAACTATGTTCATTAGCTGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061505 ENSRNOT00000087307 1 1 1 60 1 263635303 263635323 AAGAGATTAACATGGCTCCTG 58 263635263 263635281 AAATATGGGAGGCATCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007905.1 ENSRNOG00000053229 ENSRNOT00000079385 2 1 1 60 2 34452824 34452843 CTGAACTGAGAATAGGACCC 57 34444924 34444944 ATTCTTCTACATGTTGCCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069524.1 ENSRNOG00000049314 ENSRNOT00000073310 3 1 1 80 8 26659497 26659520 AGATTTCACCTCACATGCGA 60 26659436 26659456 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 Rn60_20_0049.10 ENSRNOG00000058987 ENSRNOT00000082491 1 1 1 89 20 4900273 4900791 CCATCTTCAACAGGTGCAC 59 4900202 4900220 CCAGGTTGAGTTCCCTCAG 60 Novel Rattus norvegicus 81 AABR07007997.1 ENSRNOG00000061053 ENSRNOT00000084896 3 1 1 83 2 38212981 38213205 TTGGAACCACAGAAATAGCAG 59 38213250 38213268 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055172 ENSRNOT00000088332 2 1 1 60 8 56838023 56838047 GAGAGGCTATGTTTATACTAAGTGC 59 56838062 56838083 TTAGGCTACTAACTGTTCAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114502.1 ENSRNOG00000056363 ENSRNOT00000081642 1 1 1 85 16 49518964 49520296 AGGATTTGCCTAACAAGACAC 59 49518899 49518919 CATTGAATGGAGAGTCTTGGG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000060814 ENSRNOT00000083104 2 1 1 60 8 91751324 91751342 AGTTGGAATAGGAGCTTGC 58 91751366 91751384 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059364 ENSRNOT00000088486 2 1 1 60 8 79444915 79444934 ATACAGAGAAGATGCATGGC 58 79444954 79444975 TATGGAAGCTTCAGGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070952.1 ENSRNOG00000051779 ENSRNOT00000079911 1 1 1 60 8 93161215 93161236 TTCTCACAGAACTTGACTTTGG 59 93161176 93161194 AGAAGAATCCAAACCTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056046 ENSRNOT00000080882 1 1 1 60 8 76838272 76838290 GAGAAGATTAGCATGGCCC 58 76838230 76838248 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024722.2 ENSRNOG00000057024 ENSRNOT00000077469 3 1 1 90 16 12626632 12626780 CAGACAAGAGTGAGAATGATTCTG 60 12626565 12626583 CCTAGCTTAACCACAGCCT 59 Novel Rattus norvegicus 81 AABR07071431.1 ENSRNOG00000046630 ENSRNOT00000073748 3 1 1 61 8 114847382 114847401 TCCTCACTGTTCTCTATGGC 59 114847425 114847443 ATCCCTATATGAGCGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000058283 ENSRNOT00000080998 3 1 1 60 8 128807096 128807116 TGCACACTATTAAAGCTCAGG 59 128807137 128807156 TCCGACACTCAGAAGTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053242 ENSRNOT00000088307 3 1 1 63 8 122685162 122685181 CACATGGTTGTAACCCACTG 59 122685118 122685136 ATCTGGCCAGCAATCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000090814,ENSRNOT00000091341 3 2 4 60 20 4427174 4427192 AGCAGAATCAAGAGGTGAC 57 4427132 4427152 CCAGGAATGATCTCAAGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070207.1 ENSRNOG00000056320 ENSRNOT00000091086 2 1 1 82 8 57847540 57847562 CATAAACCAATTTCTGGACACC 58 57861156 57861174 TTGAGCTCAGAGGCTAGTC 59 Novel Rattus norvegicus 81 AC128962.1 ENSRNOG00000000478 ENSRNOT00000000560 2 1 1 60 20 5491426 5491445 TGCTTATATGTACGTGTGCT 57 5491385 5491403 TTATTTCTGTCCAGGACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049134.1 ENSRNOG00000051484 ENSRNOT00000090372 2 1 1 117 5 107323644 107323663 TTACAAAGAGAACGCTCTGG 58 107323545 107323563 GTCAGATTTGACGTGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC117058.1 ENSRNOG00000045729 ENSRNOT00000071773 3 1 1 80 16 81991479 81991497 TCAAGACCATGTACCAGCC 59 81991415 81991436 GTTTGTGTTAGGAGGCTGAC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053730 ENSRNOT00000078447 1 1 1 62 3 21013276 21013294 CTGAGGTGCGATTATTGCT 58 21013318 21013338 CCTCATCTTGGAAATAAGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025896.1 ENSRNOG00000052858 ENSRNOT00000080696 2 1 1 60 16 54386645 54386663 AACGGTAATGACACTCTGG 57 54386686 54386705 GAGACTGATTCACAGAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000053212 ENSRNOT00000080362 1 1 1 60 3 40419836 40419854 TGGTTTCAAGCAAATGCCT 59 40419873 40419896 GAAGTCCAGAATAGCCAATAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050064 ENSRNOT00000070820 3 1 1 60 3 114919719 114919741 CACCTGATCTTGTCTAATCTTGG 59 114919681 114919702 TTCAGATACTCATCAGGACGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059287 ENSRNOT00000087538 1 1 1 60 3 151754375 151754399 GTGTCACATGTAAATCAGTAGATGG 60 151754411 151754435 CATAAGTCAGTATAGACATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA64 ENSRNOG00000060026 ENSRNOT00000077474 3 1 1 60 3 83631611 83631629 AGAAAGCGAGTTCCTCCAG 59 83631569 83631587 TCCTCTAGGCAAGAAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550609 ENSRNOG00000054481 ENSRNOT00000079810 1 1 1 80 3 167185270 167185291 CTGAATCCTTCTCAGAAGAGTC 58 167185007 167185232 CCAAATGTAGCCTATAGCACTG 59 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000058310 ENSRNOT00000082291 1 1 1 60 3 39210090 39210110 CTCCCTTGAAACCTAGAACTC 58 39210050 39210070 ATGTCCCTTCTTGTATGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024907.1 ENSRNOG00000051631 ENSRNOT00000091071 3 1 1 60 16 21767978 21767996 CTGAATTCCCAACTGCACC 59 21767936 21767954 TCTAAGAAGTTCACGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 3 2 2 80 14 32869829 32869848 TTCTCAGGTTCATCCAAACG 58 32856121 32869788 GAGTATAAGAAGGCTCTGTCC 57 Novel Rattus norvegicus 81 AC116236.1 ENSRNOG00000059082 ENSRNOT00000088388 2 1 1 96 14 34324320 34324338 ATTTGATCCTCACAGTGGC 58 34324396 34328825 GAATTGATTCTTTGTGGAGCC 58 Novel Rattus norvegicus 81 AABR07062615.1 ENSRNOG00000061521 ENSRNOT00000078708 2 1 1 87 6 74185 75597 CCACTGCAGAGATGGTCTC 60 75644 75666 GGAGGTCACTAATCTGTTATCCT 59 Novel Rattus norvegicus 81 AABR07046745.1 ENSRNOG00000052848 ENSRNOT00000083482 3 1 1 69 5 4548337 4549224 GATGTAAGCTGAAGGCCTC 58 4548286 4548305 CAGTCGTTGATTGTAGGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07046779.1 ENSRNOG00000058268 ENSRNOT00000077796 3 1 1 81 5 6404509 6422772 AATTCAGGTCTCAGGGTTGG 60 6422811 6422834 ATTACTGGAGACTTCTAGCATAGG 59 Novel Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 3 1 1 60 5 7577082 7577453 TCTCATCTTGGAAAGCAGC 58 7577474 7577495 TTTCTGTTCCTCAGAACATTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 2 2 2 86 1 11984282 11985883 AGAAAGCAGGGTTTCACCA 60 11984214 11984232 AATGTGCTATCACCTGCCA 59 Novel Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000080219 1 1 2 80 4 86699588 86833035 CTTCACCATCGGATCTAAGTC 58 86699528 86699547 GGCTTCTCCTTAACATTCCC 58 Novel Rattus norvegicus 81 AABR07029768.1 ENSRNOG00000052088 ENSRNOT00000081115 2 1 1 86 10 49359603 49361410 TCTCATAGTGAGAATGCACC 57 49359536 49359554 TCTTCCATGTCTTTGCTGG 58 Novel Rattus norvegicus 81 AABR07015647.1 ENSRNOG00000059908 ENSRNOT00000091793 2 1 1 184 14 68607723 68607742 AACCTCAATGATAATGGGCT 57 68600355 68600375 CCATACAGACAGGTTACTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060930.1 ENSRNOG00000059343 ENSRNOT00000083757 3 1 1 64 4 101318766 101318784 CTCTAATGGGTGGCACCTC 60 101307120 101307141 GGTCATTACTTGTAAGCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000081716 1 1 2 83 1 13371503 13381756 CTCCAGGAGAAATAGAAGAAAGTC 59 13371443 13371461 TGGAAACTCTCCACTTCCA 58 Novel Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 1 1 1 60 10 66652861 66654440 GAATTTCAGAACATCCGGTG 57 66652820 66652838 TAATCAGGTAGCATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061096.1 ENSRNOG00000058873 ENSRNOT00000080070 2 1 1 122 4 104290716 104290735 TCATATGTGGCATTTCTCCA 57 104301204 104301224 CCACCTGAAGTTTAACTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07015761.1 ENSRNOG00000060498 ENSRNOT00000078461 2 1 1 80 14 74325472 74329468 TGCTGAGAAACAGAGAAGAG 57 74329510 74329529 ATCAGTGCTGTGACTATGAG 57 Novel Rattus norvegicus 81 AABR07030235.1 ENSRNOG00000053740 ENSRNOT00000087117 1 1 1 80 10 77080669 77080687 CATGGATTTCCGAAGCTGG 59 77080727 77081942 TCCTTCCACATCTCCATATTGAG 60 Novel Rattus norvegicus 81 AABR07061251.1 ENSRNOG00000052497 ENSRNOT00000084551 1 1 1 109 4 111928334 111928353 TTCTGATTCAGCCTCCTGAG 59 111928425 111933433 TTCCAGTAGCAAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07061251.1 ENSRNOG00000052497 ENSRNOT00000084551 3 1 1 114 4 111928329 111928351 GTAATTTCTGATTCAGCCTCCTG 60 111928425 111933433 TTCCAGTAGCAAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07000544.1 ENSRNOG00000055971 ENSRNOT00000091657 2 1 1 80 1 17432134 17432296 CATTATGGAGGGACAAGCG 58 17432338 17432358 TCTAGAATAGTGCAGTGGTCC 59 Novel Rattus norvegicus 81 AC095078.3 ENSRNOG00000061792 ENSRNOT00000080749 2 1 1 64 4 117552446 117552464 GGACTCCTGTCAAGGACTC 59 117550953 117550971 AAACCGGAGGACAGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048199.1 ENSRNOG00000057026 ENSRNOT00000089749 1 1 1 80 5 66945036 66945054 TCCATTCAGGCTCACTACC 59 66943708 66944994 TCATTCTAAACCACCCTTCCT 59 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000087564 1 1 2 80 4 117655197 117661816 TTTCTGAAAGACCTGAATCCAG 58 117655138 117655157 AGGATGATTCCAGAATCCGT 59 Novel Rattus norvegicus 81 AABR07061390.1 ENSRNOG00000054278 ENSRNOT00000089766 2 1 1 74 4 121179477 121179495 GATCTTCCCAGTGTCCAGG 60 121182798 121182816 CTTATCCTGTGGCACAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030501.1 ENSRNOG00000055811 ENSRNOT00000078597 1 1 1 91 10 90771263 90771985 TTTGTCTGCCCTTCCTCTC 59 90771190 90771208 ATTAGCTTCCAGCAACAGC 59 Novel Rattus norvegicus 81 AABR07048571.1 ENSRNOG00000060978 ENSRNOT00000086205 2 1 1 92 5 82997175 83004371 GCAACTACTCGACTTGGGT 60 83004426 83004445 CCTTGGTGATGAAACCTGTG 59 Novel Rattus norvegicus 81 AABR07048878.2 ENSRNOG00000054839 ENSRNOT00000080480 1 1 1 90 5 95450127 95451414 GTTTATCCTCAACCAACTGTG 57 95450057 95450075 TGTAAACTCTGTGGCTCTG 57 Novel Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000082506 3 1 2 128 10 93203369 93204402 CAAACTCTTCACAGGCCAG 59 93204494 93204512 CGATGCTTACCATCCACTG 58 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000080878 2 1 2 81 10 93229719 93232203 CTTCCAGCTGACTCTTCTG 58 93232247 93232266 AAATGTCTGGCTTACCAGTC 58 Novel Rattus norvegicus 81 AABR07048900.1 ENSRNOG00000061469 ENSRNOT00000078686 2 1 1 105 5 96379011 96379029 AGTCCTACTGAAGCTGCAG 59 96393167 96393186 TTGTTCATTCAGTTGACCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.5 ENSRNOG00000056079 ENSRNOT00000080627 2 1 1 83 10 93260403 93262713 CCATGTACAAGAGTAGGATGGT 59 93264522 93264542 CGCCGATATCAATCTTCTCAC 59 Novel Rattus norvegicus 81 AC133055.1 ENSRNOG00000056790 ENSRNOT00000083042 1 1 1 106 10 94485402 94485420 AACCTGTGAGAATCCTGTG 57 94483768 94485334 TCTGAATCTGAATCCAGTGTG 58 Novel Rattus norvegicus 81 AC094236.1 ENSRNOG00000058836 ENSRNOT00000091241 2 1 1 82 4 148628664 148628993 TCAGAAAGGTCTGAGGACG 59 148628600 148628618 TCTTCGGAAGACTTGGCTG 60 Novel Rattus norvegicus 81 AABR07016722.2 ENSRNOG00000060106 ENSRNOT00000080488 1 1 1 80 14 112606343 112606363 CAAGAGCATATGACAGGAGAC 58 112606405 112607686 AATGGGATGCCTCATTCCT 59 Novel Rattus norvegicus 81 AABR07016856.1 ENSRNOG00000061888 ENSRNOT00000091393 1 1 1 101 15 2339146 2346045 GGAACTCAAGTGTCCTACGT 60 2339064 2339082 GTTGAAGCTCAGGTCAAGC 59 Novel Rattus norvegicus 81 AABR07062026.1 ENSRNOG00000054974 ENSRNOT00000090715 2 1 1 60 4 156727578 156727596 GCATTTCAGAAGCTGCAGG 60 156736834 156736852 TGTTGGCTTTAGCATGTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030706.1 ENSRNOG00000058127 ENSRNOT00000088591 3 1 1 80 10 100878424 100878444 TTGGAAAGAGATTCGATGAGG 58 100874036 100878382 GGATCAATGCTTTCTGGGA 58 Novel Rattus norvegicus 81 AABR07030706.2 ENSRNOG00000059380 ENSRNOT00000082818 1 1 1 91 10 100912505 100913757 TTATCCGAGTCCTCACAGG 58 100912432 100912450 ATGGTTTGAGGGCTAACAG 57 Novel Rattus norvegicus 81 AABR07017159.2 ENSRNOG00000061047 ENSRNOT00000082478 2 1 1 80 15 13968320 13968338 TGGCTCTGTTTCTAGGAGG 58 13968381 13971824 CTCCTGTGTCTCCATTAGCA 59 Novel Rattus norvegicus 81 AABR07017159.1 ENSRNOG00000060406 ENSRNOT00000080380 2 1 1 159 15 14017863 14017881 GGATTGTAGTTCGTCCCGT 60 14018003 14044419 CTTCTAAAGAGGGCCTTCCA 59 Novel Rattus norvegicus 81 AABR07030796.1 ENSRNOG00000059563 ENSRNOT00000085850 3 1 1 105 10 104902305 104902323 GTCTTCAGCTCTGCTCCTC 60 104901777 104901795 ATACTGACACCACACGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017227.1 ENSRNOG00000056328 ENSRNOT00000081094 1 1 1 80 15 18257072 18257311 GCAGGATCAATCATGCCTC 59 18257354 18257373 ACCTCAATTTCCACTTTGCA 58 Novel Rattus norvegicus 81 LOC103692434 ENSRNOG00000058853 ENSRNOT00000083620 3 1 1 81 5 126222802 126222821 ATTAAGTCCTGCATCCAACC 58 126222865 126223546 AGGAGATCACTTGGTGAGG 58 Novel Rattus norvegicus 81 AABR07049535.2 ENSRNOG00000061048 ENSRNOT00000079681 1 1 1 82 5 127123406 127123424 AAGACAGTTTGCCTTGGGA 60 127123212 127123230 TCACTTCTCTGTGCCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000088504 2 1 3 138 1 38842215 38859595 GAAAGCATGCATGAGTATCC 57 38842096 38842116 CATGTACATCAGCATTTAGGC 58 Novel Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 2 1 1 62 4 170077451 170077469 GAGAAAGTACTCGGGAACC 57 170075684 170077425 AAACGACTGAGAGTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 1 1 2 69 15 20340997 20341997 AAATGTGGGTTTGGTGTGC 60 20342030 20342048 GTAGGTCTGAGCAGAGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000091841 3 1 2 80 15 20340934 20341988 CACCAACTGTATACTGTGGGT 60 20342030 20342048 GTAGGTCTGAGCAGAGCAC 60 Novel Rattus norvegicus 81 AABR07017528.1 ENSRNOG00000061188 ENSRNOT00000080361 1 1 1 60 15 25408846 25408864 ACGGCTTTATTATGCACGT 58 25408888 25412238 CAACGGTGTGAAGTAGCTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 1 1 1 60 15 29664802 29664820 CACAGTAGCCTGGAAACTC 58 29664844 29666880 TCTTGAGGACACTCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031689.1 ENSRNOG00000056190 ENSRNOT00000090460 3 1 1 103 18 26996191 26996742 TGTATGTGCAGAAGCAGCT 60 26996809 26996827 TGTCAGACACAGTAGGCTG 59 Novel Rattus norvegicus 81 AABR07072580.1 ENSRNOG00000058600 ENSRNOT00000078778 1 1 1 75 18 27911226 27911247 GTTCTAACAGGATACCATTGCT 58 27903692 27903710 TTCTCCCAGATCCTCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031724.1 ENSRNOG00000061564 ENSRNOT00000087492 2 1 1 76 18 29732436 29732457 TGTTCTAACAGGATACCATTGC 59 29724901 29724919 TTCTCCCAGATCCTCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049886.2 ENSRNOG00000052899 ENSRNOT00000079457 1 1 1 83 5 142511360 142511545 CCCGGTTTATTAGAAACAACTC 58 142511298 142511316 TCAGGGTTCCTTGATCTCC 58 Novel Rattus norvegicus 81 AC115371.3 ENSRNOG00000054637 ENSRNOT00000077945 1 1 1 97 15 33503027 33504937 AACAATTCTGGTCAGAGGGA 59 33508522 33508540 CCCATCTGTCTGTGTTGGT 60 Novel Rattus norvegicus 81 AABR07063286.1 ENSRNOG00000058557 ENSRNOT00000078845 1 1 1 80 6 27030474 27030495 TGGTCTTGAATTTATGGTCCTC 58 27030533 27032217 GTTCTGAGCTTTGAATATTGGG 58 Novel Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 2 1 1 60 6 32307336 32307971 TTATCTGAAGGGTCTTACACTG 57 32307297 32307317 CTCCTTCAGTACCAATATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018119.1 ENSRNOG00000053233 ENSRNOT00000088052 3 1 1 80 15 40797237 40797256 AGTACATTCCACTGGCTGTC 60 40797299 40797940 GAACTGAGGGATGCAAACC 59 Novel Rattus norvegicus 81 AC141344.1 ENSRNOG00000054578 ENSRNOT00000089733 3 1 1 73 5 154431296 154431314 CAAATCGGATGCAACAGCA 60 154428920 154428938 GCTCAGAATGCTTGCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC118858.1 ENSRNOG00000052836 ENSRNOT00000080156 1 1 1 89 18 51732430 51732448 CTCTCGTACCCACTCAGAG 59 51732609 51732627 ATACGAGCAGCAACAAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 1 1 1 68 6 36731313 36731332 TACATATCATCAGTGCCGGG 60 36729865 36731282 TCATCTGTGAGGTGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 1 2 2 80 15 46495173 46495191 ATCTTGGGAAAGGCAACGA 60 46495231 46502322 GTCATCTTCTTTGAATCTCCTGG 59 Novel Rattus norvegicus 81 AC111678.2 ENSRNOG00000057425 ENSRNOT00000077181 2 1 1 81 18 52069544 52069563 ACAGGAGACTGTGAGATCCT 60 52069606 52083371 GCAACAATTCAGGTCTTCCC 60 Novel Rattus norvegicus 81 AABR07032261.4 ENSRNOG00000056368 ENSRNOT00000087269 3 1 1 81 18 57522018 57533634 CGATAAGTACTAACAGAGACCCA 59 57521959 57521978 GAAGTCCCACGTGTAAACTG 59 Novel Rattus norvegicus 81 AABR07032267.1 ENSRNOG00000058761 ENSRNOT00000083384 3 1 1 90 18 58323855 58323876 CCCACATAAACAAATGATCTGG 58 58320389 58323805 GAGGCGTATCAAATTTCCTG 57 Novel Rattus norvegicus 81 AABR07002493.1 ENSRNOG00000061661 ENSRNOT00000082654 3 1 1 106 1 75636384 75645098 TGAGTCCATTTGGCTTGGA 59 75645168 75645186 CAAATGGAAGACGTCCGAC 59 Novel Rattus norvegicus 81 AABR07063755.1 ENSRNOG00000054811 ENSRNOT00000080008 3 1 1 80 6 46622293 46622311 GAAAGGCAAAGGGAGTTCC 59 46621691 46622251 GCCTAGGTGGAGAAATTTCTG 59 Novel Rattus norvegicus 81 AABR07032520.2 ENSRNOG00000052705 ENSRNOT00000082939 3 1 1 107 18 69876151 69879800 TTGGAAAGACTGAGCAGAG 57 69876062 69876080 GCTTCTCCAAACCTCTGAG 58 Novel Rattus norvegicus 81 AABR07063811.1 ENSRNOG00000053737 ENSRNOT00000082540 1 1 1 80 6 50285152 50287620 GTTCACTAAGGCCTGAGGA 59 50285090 50285108 TTGCACATCAGTCTTCCAC 58 Novel Rattus norvegicus 81 AABR07002784.2 ENSRNOG00000060634 ENSRNOT00000088189 1 1 1 80 1 84959081 84959105 CAATACGGAAGGTCTTATCTTTCTG 60 84953504 84959043 TTCAGGCTTCTTCCCTCTG 59 Novel Rattus norvegicus 81 AABR07032582.2 ENSRNOG00000055139 ENSRNOT00000088233 1 1 1 80 18 72650712 72651958 ACCATGACAGATGGGTCTC 59 72651999 72652020 GGAAGAGTTGTGGTATAATCCC 58 Novel Rattus norvegicus 81 AABR07032593.2 ENSRNOG00000057541 ENSRNOT00000080563 1 1 1 80 18 72876865 72877559 GACAGCTTGCGATTCTAGAC 59 72876804 72876822 AGAATGCTGTCTGGATGCA 59 Novel Rattus norvegicus 81 AABR07002898.1 ENSRNOG00000054776 ENSRNOT00000084059 3 1 1 80 1 88612296 88612314 GAGACGGAAGTGGTGAGAG 60 88613001 88613019 CAGAGGACAAGAGGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002910.1 ENSRNOG00000061774 ENSRNOT00000079616 1 1 1 80 1 88974812 88974927 TACCATCATGACCAACCTCC 59 88974970 88974988 ACATCAGGGCTGGATTCAG 60 Novel Rattus norvegicus 81 AABR07032750.1 ENSRNOG00000059809 ENSRNOT00000088259 2 1 1 82 18 79660374 79660395 CGATTAATGAATCCATTGCCAC 59 79660438 79672154 TCCCGTAGATGATGACCCT 60 Novel Rattus norvegicus 81 AABR07003001.2 ENSRNOG00000059068 ENSRNOT00000084767 1 1 1 80 1 92334468 92335266 TCATATCAGGGCTGTAACAC 57 92335306 92335327 ATAGTAATGAGGACCAATGGAG 57 Novel Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 3 1 1 65 15 105203100 105205012 AAAGTAACGCTGACTTCGG 58 105205038 105205059 CGGTATTACAAGAATCTTCAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032816.1 ENSRNOG00000056823 ENSRNOT00000086996 2 1 1 64 18 84010731 84017956 CCATGACAACATACGGCTG 59 84010685 84010703 GTTGTTTGCAGAGGTGGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07033285.1 ENSRNOG00000058475 ENSRNOT00000090964 3 1 1 63 11 15669848 15669866 AAGAGAAGACACCACCTCC 59 15629595 15629616 TCCTTAAGTTCTTCTTTCCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064897.1 ENSRNOG00000054542 ENSRNOT00000078197 1 1 1 80 6 99875592 99875895 TTGTTATGGGCTGAATGAAGG 59 99875532 99875552 GATATTTCTTGTTGCTGTGCC 58 Novel Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 2 2 3 90 11 27575828 27575846 AAAGGAGAAGTCAGTGGGC 60 27575898 27576283 ATATGATTCATTGCTGGCTGG 59 Novel Rattus norvegicus 81 AABR07065050.1 ENSRNOG00000055943 ENSRNOT00000081771 3 1 1 97 6 106285379 106285398 CAAACCAAAGGACTGGTTCC 59 106285458 106285653 GCATCCTGGAGGAGATCAG 59 Novel Rattus norvegicus 81 AABR07033570.1 ENSRNOG00000056730 ENSRNOT00000086624 2 1 1 80 11 28097668 28097686 GGTTGCATGTGAATCTCCA 58 28097726 28160354 CTCCTTTATTCCCTAGTTGTCAG 58 Novel Rattus norvegicus 81 AABR07051952.1 ENSRNOG00000060472 ENSRNOT00000083047 1 1 1 85 3 30043793 30043814 CATTTGACCTGGAGGAATAGAG 58 30043860 30044407 CAGTTTACAAGGCTCTGGG 58 Novel Rattus norvegicus 81 AABR07065091.1 ENSRNOG00000057609 ENSRNOT00000088059 1 1 1 187 6 109312679 109312697 GGTTAGGAAGGCTCCTCTC 59 109314749 109314767 CTTCTCCGAGTGAGCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065091.1 ENSRNOG00000057609 ENSRNOT00000088059 2 1 1 189 6 109312679 109312697 GGTTAGGAAGGCTCCTCTC 59 109314751 109314769 ATCTTCTCCGAGTGAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020905.1 ENSRNOG00000059385 ENSRNOT00000080733 3 1 1 80 13 45575440 45575771 TTGGTTATGACAGAATTGGCTG 59 45575810 45575830 CGATGAACTCCTTCATCAGTC 59 Novel Rattus norvegicus 81 AABR07065118.2 ENSRNOG00000057343 ENSRNOT00000078206 2 1 1 80 6 110697184 110697202 AGTCACTGAACCTGAGCTG 59 110697246 110697836 GGGTCACATTAGTCCGGAG 60 Novel Rattus norvegicus 81 AABR07065118.2 ENSRNOG00000057343 ENSRNOT00000078206 3 1 1 80 6 110697181 110697199 TCCAGTCACTGAACCTGAG 59 110697243 110697833 TCACATTAGTCCGGAGACC 59 Novel Rattus norvegicus 81 AABR07065118.1 ENSRNOG00000057327 ENSRNOT00000091235 3 1 1 86 6 110719568 110720225 CAAAGCAGACAGGTTTCAC 57 110720274 110720293 GGAACTGAACTCAGGATCTC 57 Novel Rattus norvegicus 81 AABR07065122.1 ENSRNOG00000056386 ENSRNOT00000090377 3 1 1 94 6 110840508 110840527 GCCAGAATCCTCCTATTGTC 58 110842290 110842308 CTTTGGCTCTTTCCTTGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052085.2 ENSRNOG00000052827 ENSRNOT00000080064 1 1 1 80 3 35805049 35808096 TTTGCTATAAAGGAGAAGACCC 58 35808136 35808155 TGCCAGTAGTCTATAGTGGT 57 Novel Rattus norvegicus 81 AABR07003390.1 ENSRNOG00000056901 ENSRNOT00000082223 2 1 1 94 1 108549217 108554618 TCGGGTGGATTCATAATTGGA 59 108549143 108549161 GTTTGTGGGAATGGAACCC 59 Novel Rattus norvegicus 81 AABR07021293.1 ENSRNOG00000057047 ENSRNOT00000081122 1 1 1 63 13 64551465 64551484 CGAGAGGATAATTCAGGTGC 58 64549152 64551442 AACATATTCCTTTGCACCAAGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07033854.1 ENSRNOG00000054956 ENSRNOT00000091956 3 1 1 136 11 40603456 40603477 CAGCTGATTCCAACTTATAGTG 57 40601997 40602015 GCAGTCTTGATGACAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021391.1 ENSRNOG00000059183 ENSRNOT00000085088 2 1 1 84 13 69563801 69563819 AGGAAGTACCTGCTGAAGG 59 69563867 69564187 ACTGGATACGTGAACCCTG 59 Novel Rattus norvegicus 81 AABR07033980.1 ENSRNOG00000055992 ENSRNOT00000081169 1 1 1 80 11 46870209 46870228 GATGCAGCGAGTATTCAGAG 59 46870268 46876414 ATAAGATCTCCATCCTCATCCT 58 Novel Rattus norvegicus 81 AC098929.1 ENSRNOG00000060126 ENSRNOT00000086253 2 1 1 80 6 122728625 122729618 TATTCCACAGCACCAATTACAG 59 122728566 122728588 ATTATTTCTTCCTAGGCCAGAGG 60 Novel Rattus norvegicus 81 AABR07034100.1 ENSRNOG00000056538 ENSRNOT00000080184 1 1 1 60 11 52488798 52488819 TACAATTACGGATCTTCTGGGT 59 52470505 52488777 CTGGGAGAAAGAGCCTCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07021494.1 ENSRNOG00000051559 ENSRNOT00000089910 1 1 1 80 13 74763221 74763240 GGCTCAACATTTATGCTCAC 58 74763283 74764028 ATTCCAAAGGAGTGCTCTG 57 Novel Rattus norvegicus 81 AABR07021614.1 ENSRNOG00000061660 ENSRNOT00000086408 3 1 1 81 13 81592095 81592113 CTGCATACAGGATCAGCCA 60 81592158 81593996 TCACAGTCGTAAGGGAGGA 60 Novel Rattus norvegicus 81 AABR07034573.2 ENSRNOG00000056536 ENSRNOT00000085341 1 1 1 80 11 79092006 79093434 CTTCAAGGACCATACAGATGAC 59 79093474 79093493 ATGCTCACCTTTAAAGGCTC 58 Novel Rattus norvegicus 81 AABR07034598.1 ENSRNOG00000058711 ENSRNOT00000088004 2 1 1 73 11 80630347 80630365 CTCACAGGTGCAGAAAGGA 60 80633032 80633050 GTTCCAGTGCAATCCAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052689.1 ENSRNOG00000060563 ENSRNOT00000087442 2 1 1 99 3 69355020 69355039 ACAAGAGCTTCAACACTCTC 58 69355098 69359469 CAGAGTTTCTTTCCTATCCCTC 58 Novel Rattus norvegicus 81 AABR07071917.1 ENSRNOG00000057496 ENSRNOT00000078442 3 1 1 86 1 128398438 128398456 TACTCCAGGACAGGAAACG 59 128418798 128418816 AAGAGCCTAGGGAAGAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 3 1 1 69 6 133633009 133642496 CATCCTGGATAGTGAACCG 57 133632958 133632976 ATTTCTACCCAGGCAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034761.2 ENSRNOG00000055545 ENSRNOT00000089264 2 1 1 80 11 88542918 88542936 TAGTCACCCGTTTAGGAGG 58 88542461 88542874 GCCCAATGATCAATCCTGG 59 Novel Rattus norvegicus 81 AABR07004221.2 ENSRNOG00000057208 ENSRNOT00000081129 3 1 1 80 1 130549449 130549467 CAGAAACCACAAACTTGGC 58 130547749 130549405 AACGGTGATCGATTCTTCC 58 Novel Rattus norvegicus 81 AABR07065590.1 ENSRNOG00000061911 ENSRNOT00000087252 3 1 1 92 6 135984153 135984171 TCCGGATGACCTTGAACTG 59 135983760 135984097 CTTTGCAGGGAACACTGTG 59 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 3 1 2 141 1 131386723 131431806 CGGTGATACTACAACCACTG 58 131385851 131386619 CAACTTGTCATAGCCTGGC 59 Novel Rattus norvegicus 81 AABR07022037.1 ENSRNOG00000056464 ENSRNOT00000079252 3 1 1 80 13 103719028 103719048 TAGATGTTCCTTTGGGAAGTG 58 103716428 103718988 GCTGTATTCTGGGATAACCTG 58 Novel Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 1 1 1 65 3 80966025 80966043 GACAAACTGAGCACCATGG 59 80966072 80968172 CAGACATGTGACGACAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022039.1 ENSRNOG00000054076 ENSRNOT00000091867 1 1 1 65 13 103758533 103758551 ATTTGTTGCACGGTCAAGG 59 103758578 103770787 GACTCCACATCAAACAAAGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 1 2 3 84 12 3223498 3223516 AGGTGTAGGCTTGACAGTG 59 3223558 3301971 CAGTAGAAGTCTTTAAGACAGATGC 60 Novel Rattus norvegicus 81 AABR07065772.3 ENSRNOG00000051722 ENSRNOT00000077867 2 1 1 106 6 140608589 140608692 CATTTCCAAGCTGTGTCCTG 60 140608502 140608520 TGAGAAGCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07052915.1 ENSRNOG00000055847 ENSRNOT00000089284 2 1 1 80 3 84147670 84149141 CCTCTGACTGAGTTGAGTG 57 84149184 84149203 TCTCTGTTCATGACTTTGCT 57 Novel Rattus norvegicus 81 AABR07052923.1 ENSRNOG00000054354 ENSRNOT00000078869 1 1 1 91 3 84364906 84366907 CTGAGAATGGCTAGAGTATTACAC 59 84366954 84366975 CACATACTTTCCAATTCTCCCT 58 Novel Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 2 1 1 60 13 105918533 105919472 TTTGAAGTCACATTCCCTGGA 60 105918493 105918512 TGAGGCAGTTCTGTCTATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC134037.1 ENSRNOG00000057992 ENSRNOT00000086639 1 1 1 80 13 107643155 107643173 GAGAAGGACTCGGATCTGG 59 107643215 107643588 GCACATACTTGGACTGAAAGG 59 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000080560 1 1 2 85 16 450876 451583 TGGCAAACATGAAGAAACAG 57 450810 450828 TTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776,ENSRNOT00000078681 2 2 2 84 6 143749815 143749916 GCTTGTCCCTGCATATGTC 59 143749749 143749767 CAGGCTTAGGGTCTTGGAG 60 Novel Rattus norvegicus 81 AABR07053283.1 ENSRNOG00000059974 ENSRNOT00000083083 3 1 1 82 3 97133595 97133613 CCAACTCAATATCCTGCCC 58 97133433 97133549 GACTGAGATTCTCATCGGG 57 Novel Rattus norvegicus 81 AABR07053412.1 ENSRNOG00000051776 ENSRNOT00000078040 2 1 1 80 3 105316719 105330173 ATGTCTCATTCAGGAAAGTCTG 58 105316660 105316678 CTGTAGTTATGCAGCAGGC 59 Novel Rattus norvegicus 81 AABR07053435.1 ENSRNOG00000056640 ENSRNOT00000079022 1 1 1 80 3 106923212 106923339 AGGCTTATGAATCAAGATTGGC 59 106923153 106923174 AGTTTCGAATCTTCAGTTGAGG 59 Novel Rattus norvegicus 81 AABR07072272.2 ENSRNOG00000054368 ENSRNOT00000090591 3 1 1 135 12 13468582 13470915 ACTCCATGGAACCCTTCTG 59 13471013 13471032 CATACTTACCAGGCATCAGC 59 Novel Rattus norvegicus 81 AABR07066436.1 ENSRNOG00000060948 ENSRNOT00000092074 1 1 1 80 9 8864580 8864598 TATGTGGAGGCAAAGAGGT 58 8857669 8864536 TTCAACATCCAGCTGTTGC 59 Novel Rattus norvegicus 81 AABR07053471.1 ENSRNOG00000053580 ENSRNOT00000077088 2 1 1 80 3 108720536 108720557 ATATCATGGAATATCACTGCCC 58 108689044 108720495 CCAGGTTTGCTCCATTCTG 59 Novel Rattus norvegicus 81 AABR07053480.1 ENSRNOG00000057230 ENSRNOT00000087561 2 1 1 95 3 109388065 109400375 GGTGGAGTCCAGAGTACAC 59 109400431 109400452 GCTCATAACATGATCTGTGCTG 60 Novel Rattus norvegicus 81 AABR07066735.1 ENSRNOG00000051921 ENSRNOT00000080300 1 1 1 81 9 13523034 13523052 TCTCCCTTCATGGATGCTG 59 13523095 13533206 TAAAGATAACTGCTCCTGCCT 59 Novel Rattus norvegicus 81 AABR07035591.1 ENSRNOG00000052542 ENSRNOT00000036416 2 1 1 80 12 20141325 20141343 GGACATAATCTGGCCATGG 58 20141386 20141700 GTATCCTCCTGAGTTCCCAG 59 Novel Rattus norvegicus 81 AABR07035722.1 ENSRNOG00000056359 ENSRNOT00000081965 2 1 1 81 12 21417543 21417562 AACAGTGAGAAACGTGAGAG 58 21417923 21418109 ACACGATGTTATTATCCTTGGG 58 Novel Rattus norvegicus 81 AABR07066820.1 ENSRNOG00000052724 ENSRNOT00000082584 3 1 1 81 9 17500954 17500972 TGGATTCCTCAGTGTCTGC 59 17501016 17501624 TTCTTTGCTGGATCTCTGGG 60 Novel Rattus norvegicus 81 AABR07024799.2 ENSRNOG00000059758 ENSRNOT00000089776 2 1 1 81 16 17289979 17290002 CTGTCTCTACTCCTCTATTCTACG 59 17290041 17310337 AGGAAGATCTTGTCAGGCTC 59 Novel Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 1 1 1 69 9 18820432 18820450 GAGAGCAGAATGGGTGGAG 60 18818540 18820402 TCCTACTCATCCATTCATCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053717.1 ENSRNOG00000057575 ENSRNOT00000087160 1 1 1 122 3 122417299 122417317 GAACAGACTGCTACCCGAG 60 122418893 122418911 ATCTCAGAATCGCACAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.5 ENSRNOG00000058675 ENSRNOT00000091067 3 1 1 80 12 22350957 22350977 GGAAATTTCAGTGTCCCTCAG 59 22351018 22351205 ACTGCAGAGGGATATTGGTG 60 Novel Rattus norvegicus 81 AABR07066841.2 ENSRNOG00000060739 ENSRNOT00000083180 2 1 1 80 9 18983759 18984310 TACGATCATTTCCAGGATTTGG 59 18983700 18983721 TTCTGGAGTGAAGTAGAAGGTG 60 Novel Rattus norvegicus 81 AABR07053787.2 ENSRNOG00000053162 ENSRNOT00000081457 2 1 1 81 3 126176715 126181273 CATGAAGATTCACAGAAAGGTAGAG 60 126181309 126181330 CCTTGTCCTTTCGGAATATGAC 59 Novel Rattus norvegicus 81 AABR07004888.1 ENSRNOG00000056725 ENSRNOT00000082638 2 1 1 77 1 166120708 166120727 GGCTATCACCATACCCTTCC 60 166119890 166119908 TAGACCCACATGACAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053881.1 ENSRNOG00000058229 ENSRNOT00000077944 1 1 1 80 3 132172912 132172933 TTGCTGATGAAAGATCAACTCC 59 132096991 132172871 TTCGGCCATAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07067183.1 ENSRNOG00000057182 ENSRNOT00000090092 2 1 1 89 9 33915125 33915145 GCAAAGATCATTCTGTGAGCA 59 33913724 33915080 TAGTTGCTCCTCTTAATATCCTCAC 60 Novel Rattus norvegicus 81 AABR07067388.2 ENSRNOG00000061446 ENSRNOT00000083294 1 1 1 85 9 42268961 42268980 AGAAAGGAGATGCAGAGCAG 60 42216499 42268913 AGTCATCATGGGCTCACTG 60 Novel Rattus norvegicus 81 AABR07072511.1 ENSRNOG00000054453 ENSRNOT00000078056 1 1 1 80 16 49163648 49163667 TCATGCCATTTCTCAAGAGG 58 49163709 49165479 TCCATTCTCCACTGTTTCTC 57 Novel Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 1 1 1 81 12 36812690 36812708 TTACTGGGCTGATGGATGG 59 36812753 36813670 TACAGGATAGAACGAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025986.1 ENSRNOG00000057136 ENSRNOT00000083270 2 1 1 60 16 57841703 57841724 CCTTTGTGACTATGTAGCTCAG 59 57841745 57849412 TCTACTGGAATCTGGGCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07054437.1 ENSRNOG00000055407 ENSRNOT00000082230 3 1 1 80 3 153830441 153830460 AGAGACTCAGATTCACTCCA 58 153830153 153830400 ATGTCACATTGTACCTCAAGG 58 Novel Rattus norvegicus 81 AABR07026021.1 ENSRNOG00000055088 ENSRNOT00000086846 2 1 1 118 16 59517087 59517108 TGTGCTTCTAGGAGGATTAGAG 59 59524208 59524226 CTTCTTCTGTGCCTTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026044.1 ENSRNOG00000061769 ENSRNOT00000078296 2 1 1 85 16 60771669 60771687 GCACATTTCCCATGGTTCC 60 60771731 60773887 CATAGATCTTTCTTAGCAACCTCC 59 Novel Rattus norvegicus 81 AABR07026049.1 ENSRNOG00000054214 ENSRNOT00000089986 1 1 1 85 16 61221579 61228593 AAGATCTATCCTGCAAGACTG 57 61228639 61228658 CACTTACACTGTATCAGCCC 58 Novel Rattus norvegicus 81 AABR07036452.1 ENSRNOG00000058699 ENSRNOT00000088109 1 1 1 81 12 43658334 43658352 ACTTTCTTGCCAGCTTCCT 60 43658394 43658551 TTTCCCAACATCTGATGATTGG 59 Novel Rattus norvegicus 81 AC113785.3 ENSRNOG00000060104 ENSRNOT00000078332 1 1 1 80 16 69029567 69029586 TCGCCAAGTTGACATTTGAG 59 69029627 69030433 CCAAATAGGTGTCCATTACGG 59 Novel Rattus norvegicus 81 AABR07036556.1 ENSRNOG00000056283 ENSRNOT00000088941 1 1 1 80 12 48061753 48061773 CTGGGAATCTATACCTCCAGC 60 48059408 48061711 GATGGCGTAGACATGTGGT 60 Novel Rattus norvegicus 81 AC095390.1 ENSRNOG00000052761 ENSRNOT00000077618 2 1 1 108 12 51760388 51822456 ATGAATTGACCCAGCAAGG 58 51760298 51760316 CTTCATGTTCTTGCCAGCA 59 Novel Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933 2 1 2 80 9 71388854 71394823 ACTGCATTCTAAGGCACCT 59 71388792 71388816 GTGTCCCTTTATCTTCTTTACAAGG 60 Novel Rattus norvegicus 81 AABR07026441.1 ENSRNOG00000055536 ENSRNOT00000085982 1 1 1 92 16 76750239 76750257 TGTCAATGCAGGATGACAC 58 76719470 76750186 CCAATTCCACCTTAGTAATTGC 58 Novel Rattus norvegicus 81 AABR07037149.1 ENSRNOG00000058184 ENSRNOT00000083697 1 1 1 80 X 14547457 14548424 AGTCAAAGACCAAGGAAGC 58 14547395 14547415 GCATTCTCTTACCTGATTCCC 59 Novel Rattus norvegicus 81 AABR07068066.3 ENSRNOG00000059378 ENSRNOT00000085631 1 1 1 80 9 80687922 80691640 AAATCTTGGTGGTCAAACGG 59 80687861 80687880 AAGAATGCCTTGGATTGCTG 59 Novel Rattus norvegicus 81 AABR07068066.3 ENSRNOG00000059378 ENSRNOT00000085631 3 1 1 80 9 80687922 80691639 AATCTTGGTGGTCAAACGG 58 80687860 80687879 GAAGAATGCCTTGGATTGCT 59 Novel Rattus norvegicus 81 AABR07068085.2 ENSRNOG00000058000 ENSRNOT00000082329 3 1 1 121 9 82791536 82791554 ATGCAGAGGCAGAAGAGTG 60 82785605 82785623 CAAATCGTCCGGGATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037698.1 ENSRNOG00000054904 ENSRNOT00000080867 3 1 1 83 X 28578642 28578660 ACCTCGAGATCATCTACCC 58 28578706 28582288 ACCAACAATATGATCCTGCA 57 Novel Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 1 1 1 60 X 28942394 28943205 AGGTCTTTACTAATAGCCTGGT 59 28943224 28943244 CAGTAGCCTTCTCTGAAATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037878.2 ENSRNOG00000052694 ENSRNOT00000084241 3 1 1 82 X 34688109 34689281 TTCTGGAATTATCCTCCTCTGAG 59 34689320 34689341 TCCACTTTCTGCACTTTAACTC 59 Novel Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 3 1 1 61 9 86775874 86775893 CTGAAGTTACGAATGAGGGA 57 86775916 86781369 TCTCTGATTGCTAAGCATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006436.1 ENSRNOG00000058581 ENSRNOT00000085400 1 1 1 80 1 233668476 233669870 ACACAAACATGAAAGGCGAG 60 233668415 233668433 GCAACCACAGTAGACAGGA 59 Novel Rattus norvegicus 81 AABR07068182.1 ENSRNOG00000056564 ENSRNOT00000078715 2 1 1 80 9 87907725 87907743 TAGGAAAGGTGGTCGATGG 59 87899565 87907685 CTTTATCAGATTATCCGGGTGAC 59 Novel Rattus norvegicus 81 AABR07056013.2 ENSRNOG00000052125 ENSRNOT00000081869 1 1 1 81 7 18291569 18291590 GGACCATTTCTTTCTTGAAGGT 59 18288587 18291530 TCTGTCAAACTAGTTCTTGTGC 59 Novel Rattus norvegicus 81 AABR07039206.1 ENSRNOG00000060462 ENSRNOT00000082606 1 1 1 64 X 71711113 71711131 TAAGGAAATTGCCCATGCC 59 71710528 71710546 GATACATGCACACGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000077989 2 1 2 80 1 244421286 244540120 TTCCTCTTATGTCATGTGCTG 58 244421226 244421244 CCAGTTAGAGTGCAAGCAG 59 Novel Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000077323 3 1 2 79 X 72723955 72723974 TTATGTACGCATACGGACCA 59 72724510 72724528 TCTCTTCTCGGTGTTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068420.1 ENSRNOG00000058051 ENSRNOT00000079101 1 1 1 87 9 104555221 104559627 TATGATGGGATGCAATGCTG 59 104545410 104545430 GGTCAACCCTTCTTTAATGCA 59 Novel Rattus norvegicus 81 AABR07056330.1 ENSRNOG00000056314 ENSRNOT00000090134 2 1 1 83 7 22496873 22496891 TCTCCTAAGCAAGGAGGTG 58 22495676 22496828 TTAATGGACCTTGTCAGACAG 58 Novel Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 3 1 1 66 X 96466494 96469361 AGGTAGTTCATCCATTACAGCT 59 96466449 96466467 ATGGTTGCTTCATGGACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040444.1 ENSRNOG00000058509 ENSRNOT00000089676 3 1 1 81 X 100578843 100616891 GACTTCTGAGTGCTTATTCTCTG 59 100616931 100616950 TGGATGTGAGCACAGTACAG 60 Novel Rattus norvegicus 81 AC130862.4 ENSRNOG00000059363 ENSRNOT00000088098 3 1 1 86 X 105536537 105536555 TATCTGTGGATCTCGCTCC 58 105536602 105537312 GCTTCTTGCAGATTTGATTCTG 59 Novel Rattus norvegicus 81 AC096330.1 ENSRNOG00000052291 ENSRNOT00000081446 3 1 1 82 1 256934622 256935411 TGTTTGAACACAGGTTTGATCC 60 256934561 256934579 CGTCACAATGGTGGTTCTC 59 Novel Rattus norvegicus 81 AABR07056465.1 ENSRNOG00000058036 ENSRNOT00000087421 3 1 1 81 7 26181695 26186142 CTTTACCTCTAGAAGTTCAAAGTCC 59 26186179 26186199 AACAGCCTTTCTTTCTTCCTG 59 Novel Rattus norvegicus 81 AABR07027039.1 ENSRNOG00000053981 ENSRNOT00000091714 3 1 1 81 17 11850957 11850978 TGTGATAACTCCAGTTTGTGTC 59 11848091 11850915 GACTTATTCCGTGGTGCTC 58 Novel Rattus norvegicus 81 AABR07027080.1 ENSRNOG00000060331 ENSRNOT00000081655 2 1 1 81 17 13413616 13413636 GTTCCTTCATTGTGACCTTCC 59 13413677 13426351 AGAGGCAGCCTATATTCATGG 60 Novel Rattus norvegicus 81 AABR07042733.1 ENSRNOG00000053984 ENSRNOT00000089379 3 1 1 88 19 6013280 6013298 AATGTGGGTAGCACATGTG 58 6004070 6004088 AAGATCCAGTGGGTAAGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042780.1 ENSRNOG00000056140 ENSRNOT00000079386 2 1 1 93 19 8253058 8254507 AGTTCTTTCGTTCTTGGCT 57 8254564 8254582 AAACAGCATGTGAGACTGG 58 Novel Rattus norvegicus 81 AABR07027152.1 ENSRNOG00000053097 ENSRNOT00000082420 1 1 1 89 17 16662931 16662950 ATAGCCAGTACTGTCCATGG 59 16662998 16665539 TGGATTTCTCTGTCTCTTCTCTG 60 Novel Rattus norvegicus 81 AABR07027240.1 ENSRNOG00000057369 ENSRNOT00000091373 3 1 1 82 17 20827957 20827976 AAAGGAAGATCAAGCAAGGG 58 20827802 20827912 GAAGCACTTGGCAGATCTC 59 Novel Rattus norvegicus 81 AABR07069197.1 ENSRNOG00000059516 ENSRNOT00000084249 1 1 1 80 8 11546919 11548906 CCAGCTCAATTCCTAAGATACAG 59 11548945 11548964 ATCCACAAAGCCCATATTCC 58 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 2 2 3 87 17 20998250 20998269 AAGCTCTCCCTATTTCTGGT 58 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07057219.1 ENSRNOG00000052947 ENSRNOT00000091352 1 1 1 64 7 61163831 61163849 GCTTAAGATCTCCATGGGC 58 61154325 61154343 ATACTGTACAAGCTGCTCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 1 1 1 60 17 28003021 28003043 GTTGTCATCACTACCATCTATCC 59 28000134 28003001 CAAGCTTGGGTACAGTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 1 1 1 67 1 273968429 273969815 AAAGACTGTTAGCGGTCTG 58 273968380 273968398 ATGAGTCTGCTTGGTCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057231.1 ENSRNOG00000056491 ENSRNOT00000091512 2 1 1 111 7 61874693 61874711 AATTTCTTCCGCGTTCAGC 60 61851309 61851328 AAACTGTCTTCCTAGGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027407.1 ENSRNOG00000057161 ENSRNOT00000090633 3 1 1 80 17 28825190 28825211 GTTTGACTAAACGTAGGATGGG 59 28825251 28829264 CCAGGTAAGCTATTTGCACC 59 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 3 1 1 81 7 62236168 62236949 CTTCCTTCCTCATGGACGG 60 62236993 62237012 TTCTTCAGTCTTGAGCTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027431.1 ENSRNOG00000061171 ENSRNOT00000082574 3 1 1 80 17 30818713 30818732 CATGTCTGGTCTACTCTGCT 59 30818774 30822343 TCCTGTGTACATCCAGAAGC 60 Novel Rattus norvegicus 81 AABR07027476.1 ENSRNOG00000053846 ENSRNOT00000089320 2 1 1 81 17 32421269 32421287 TGATGGTGATGCTCAACTG 58 32418502 32421224 GCCTTTCTCATCCATGTGG 59 Novel Rattus norvegicus 81 AABR07057304.1 ENSRNOG00000054802 ENSRNOT00000083324 3 1 1 80 7 65383679 65388114 GTAAAGTCAAGGTCAACCTCTG 59 65383620 65383641 TTGAATATGCTTATCTCCAGCC 58 Novel Rattus norvegicus 81 AABR07027478.2 ENSRNOG00000052021 ENSRNOT00000087921 3 1 1 82 17 33081033 33081051 CTGAAGACAACCGATGGAG 58 33081097 33081713 GTTTCCATGGAGCCTTGTC 59 Novel Rattus norvegicus 81 AABR07057379.1 ENSRNOG00000061135 ENSRNOT00000091151 2 1 1 81 7 68622772 68624052 AGTGCTGACATTCAGGGTC 60 68624095 68624115 TGGAATGTAGGATCACCAAGG 60 Novel Rattus norvegicus 81 AABR07007026.1 ENSRNOG00000052188 ENSRNOT00000083048 2 1 1 91 1 277540730 277563075 TTGAAATACGCCACTGTCCT 60 277563129 277563147 ATGACAAAGTGGCAATGCC 59 Novel Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000088664 3 1 2 101 17 37911566 37911590 GGATGTACCTCTTAATTACAAGCAG 60 37911643 37912744 CTTGATATTTCTAACCTCTCAGCAG 60 Novel Rattus norvegicus 81 AABR07027692.1 ENSRNOG00000059534 ENSRNOT00000077648 3 1 1 115 17 40857371 40857390 CTAGACAGGACACATGGGAC 60 40854165 40857295 CCATTCTCCAGAAATCATGGG 59 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 3 2 3 81 10 15355 16175 CTACAAGCAGAGGGCAGAG 60 15292 15314 CTCCAATTCAGCTTCATATTCCC 60 Novel Rattus norvegicus 81 AABR07057590.1 ENSRNOG00000061701 ENSRNOT00000082015 1 1 1 81 7 79455645 79456888 AGCACATTGAAGAACGAGAG 58 79455583 79455602 CTCAGAGCTCATGCTTAGTC 58 Novel Rattus norvegicus 81 AABR07043711.1 ENSRNOG00000060858 ENSRNOT00000089868 1 1 1 90 19 36256538 36256556 ATAGTGTGCTTCCTCTCCG 59 36242350 36256484 GATGTTGAATGGGCACTGG 59 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 1 1 1 60 10 1581205 1582493 ACTGCCTTAGGATTCTTTCTG 58 1582513 1582533 CCCAGAAAGAGTAGAAGAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC107174.1 ENSRNOG00000059210 ENSRNOT00000086618 1 1 1 80 8 48401650 48401668 TCACTGAGATGGGAGACCT 59 48400795 48401606 CTGTGAAGCCTTGTTCTGC 60 Novel Rattus norvegicus 81 AABR07029175.1 ENSRNOG00000054141 ENSRNOT00000089720 3 1 1 77 10 11358543 11358562 GGCTGATAAGAAACTGGTGG 59 11362046 11362064 TCTTCCAGCAGTGTACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057844.2 ENSRNOG00000061127 ENSRNOT00000091021 2 1 1 80 7 90423030 90423048 ACAGTATGACCCTGGAGGA 59 90422428 90422989 ATTCACCATAGCCTCTCATAGC 60 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000091294 2 1 3 82 7 97462386 97462407 GAACATGGACTTACTGTTTGGA 59 97397638 97462346 ATCAAACATCTCTGACCTTCCT 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000090860 1 1 3 84 7 97462387 97462407 GAACATGGACTTACTGTTTGG 57 97358538 97462342 CTAGGAAGAACCTCTGACCT 58 Novel Rattus norvegicus 81 AABR07007693.1 ENSRNOG00000055870 ENSRNOT00000090810 3 1 1 117 2 24558579 24559236 TGAAGTGATAGAGAATTGGCAC 59 24559312 24559332 CATCTTTAGCATCTTCACCGT 59 Novel Rattus norvegicus 81 AABR07058141.1 ENSRNOG00000056489 ENSRNOT00000079932 2 1 1 81 7 102162828 102162846 GACTTCCACTTCTCAGGAC 57 102155695 102162783 CATCTCGTGAGATTGAGGC 58 Novel Rattus norvegicus 81 AABR07029391.1 ENSRNOG00000058347 ENSRNOT00000083201 2 1 1 70 10 26258479 26261367 GTGTGCAGAGAAAGTTTCTC 57 26261400 26261418 TAGTGGAGAGCTCATGACG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07070161.3 ENSRNOG00000054536 ENSRNOT00000080447 3 1 1 69 8 55526253 55526271 GATTGCTTCTTGTCTGCCT 58 55523993 55526222 GCTCTGATAGAAGAAGGAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122,ENSRNOT00000077631 1 2 2 83 X 137481924 137481942 AAACAAGACGGGAGGACTG 60 137478101 137478120 TGGTAGGAGAGGTGAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122,ENSRNOT00000077631 2 2 2 84 X 137481924 137481942 AAACAAGACGGGAGGACTG 60 137478100 137478120 TTGGTAGGAGAGGTGAAACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 1 1 1 75 8 56024614 56024633 GCTCTCCATATTTGGAAGCA 58 56024043 56024576 TTTGTCCTTCGGAGTGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058360.2 ENSRNOG00000053271 ENSRNOT00000083791 1 1 1 175 7 111697215 111697233 CACCAATGCCTTAACAGGG 59 111675346 111697078 AGAGCTTTAGGAGACCATCTC 59 Novel Rattus norvegicus 81 AABR07007775.1 ENSRNOG00000051888 ENSRNOT00000091950 1 1 1 80 2 27806889 27810667 GATTCGTGATCCATCACAGG 59 27806828 27806847 CTGGCCTGGAATCTTATTCC 58 Novel Rattus norvegicus 81 AC141334.2 ENSRNOG00000052941 ENSRNOT00000080830 3 1 1 81 10 36663511 36663529 TAAATGGCACCACCTACAG 57 36661236 36663467 ATTCCAGGACTTGTTCTTCC 58 Novel Rattus norvegicus 81 AABR07042407.1 ENSRNOG00000058951 ENSRNOT00000077816 2 1 1 63 X 155110177 155110195 GGAAAGCAATCTTCTGGCC 59 155110222 155123445 ACTCATGCTGGACTCTGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07058498.1 ENSRNOG00000055973 ENSRNOT00000083221 3 1 1 94 7 119690093 119690111 CTGGTTACAGACCCTGGTC 59 119696018 119696037 GATCCTGACACTTCCTCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072559.2 ENSRNOG00000056375 ENSRNOT00000087248 1 1 1 80 17 44800475 44801445 CACCAATGACTCAATCCCAG 59 44801485 44801506 GTTCCAACTACTTGTCTGTCTC 59 Novel Rattus norvegicus 81 AABR07044367.1 ENSRNOG00000052534 ENSRNOT00000081627 3 1 1 61 20 3520157 3524018 AGTACAGTGATACTGAACCCAC 60 3524040 3524058 CAGTTCAGCGGTAAAGCAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07027962.1 ENSRNOG00000054943 ENSRNOT00000081987 3 1 1 60 17 51204741 51204762 AGAGGACATGATCAATAGATGG 57 51203964 51203984 GTGGATTCTCATAACATACGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07007853.1 ENSRNOG00000056525 ENSRNOT00000086168 2 1 1 126 2 31386333 31388254 ATGTAAACACATTGAGGCCT 58 31388343 31388361 CTTGACCGAGTGTCTATCC 57 Novel Rattus norvegicus 81 AABR07027979.1 ENSRNOG00000053341 ENSRNOT00000082797 1 1 1 82 17 51948986 51949004 CAAGCACTGCCAAAGTCAG 60 51949047 51980929 AGAATCTTACGTTTGAAGCCTC 59 Novel Rattus norvegicus 81 AABR07007863.1 ENSRNOG00000052924 ENSRNOT00000082365 1 1 1 63 2 31870509 31870527 GAATGACCAGGAACGAACG 59 31845301 31845319 TCAAGAACTTGCGTCTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007863.1 ENSRNOG00000052924 ENSRNOT00000082365 2 1 1 64 2 31870509 31870527 GAATGACCAGGAACGAACG 59 31845300 31845319 TTCAAGAACTTGCGTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070486.1 ENSRNOG00000061552 ENSRNOT00000081548 2 1 1 81 8 72285275 72290378 TACAACTGCGAGGTAAACTG 58 72290422 72290440 GTCTGCGTCTCTTTAGTGC 59 Novel Rattus norvegicus 81 AABR07059239.1 ENSRNOG00000053011 ENSRNOT00000088521 2 1 1 89 4 10566667 10582640 CTGGTGTAAAGGAGCTGTG 58 10566596 10566614 CTAACAGGGTTCCACTTGG 58 Novel Rattus norvegicus 81 AABR07007986.1 ENSRNOG00000053187 ENSRNOT00000078915 2 1 1 80 2 37222294 37223633 CCATGTTGCATCACATTCAC 58 37223673 37223694 TGTCTCTGCTTGTTTATACGTG 59 Novel Rattus norvegicus 81 AABR07044631.1 ENSRNOG00000053588 ENSRNOT00000091531 2 1 1 80 20 14000327 14000345 CTCTTTCTTCACGGTCACC 58 13999572 14000283 AGGTGCTCACACCATACTC 59 Novel Rattus norvegicus 81 AABR07007987.1 ENSRNOG00000056598 ENSRNOT00000089696 1 1 1 80 2 37426240 37427579 ATGTTGCATCACATTCACAC 57 37427619 37427640 GTTGTCTCTGCTTGTTTATACG 58 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 1 1 1 61 8 81635503 81635521 GAAGGCTACAGGTGATGGG 60 81490685 81635478 GAATGGCCCATAAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 2 1 1 64 2 38743675 38745789 TTTAAGTTACAGGCTGCTGG 58 38745816 38745834 CAGCATCTCAGAGGAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028465.1 ENSRNOG00000055963 ENSRNOT00000087930 1 1 1 80 17 71152105 71158599 TGGGAAATATGCAGAGAAGTG 58 71152045 71152066 GATGGCTACTTGAAAGTTTACG 58 Novel Rattus norvegicus 81 AABR07070775.1 ENSRNOG00000060174 ENSRNOT00000091831 2 1 1 80 8 84144842 84144860 CAGTGTTGTGAGTCGTCAC 59 84143188 84144799 CACCAGAATCCTGAACTCCT 59 Novel Rattus norvegicus 81 AABR07028511.1 ENSRNOG00000058351 ENSRNOT00000087046 1 1 1 80 17 73064847 73065309 CAGTCGATAGACCAAGAACAC 59 73065350 73065369 AGAAAGGTGCAGGAATTCTC 58 Novel Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 2 1 1 60 8 89236978 89236999 TTCTTAGCACAGTATCCTCTGG 59 89235875 89236959 TTCCACTGTCATTGTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000089163 3 1 2 84 2 43406758 43406777 CATATGGAGGGAAAGATGGC 58 43406821 43414090 GCTGTTGTGTTCCTTATTACAG 58 Novel Rattus norvegicus 81 AABR07044807.1 ENSRNOG00000060396 ENSRNOT00000077552 2 1 1 80 20 21497531 21497550 TCTTAGGAGTGAAAGCGTGG 60 21497286 21497490 AGCAATAAATGCCTAAGCCTC 59 Novel Rattus norvegicus 81 AABR07008108.1 ENSRNOG00000053901 ENSRNOT00000090040 1 1 1 80 2 44012338 44013390 CTCAGATGGGTCCTGAGAG 59 44013432 44013452 TTTCCTTCTTCCTCAAGTCTG 58 Novel Rattus norvegicus 81 AABR07028749.1 ENSRNOG00000056802 ENSRNOT00000083328 3 1 1 90 17 84664912 84665809 TCCAAGGAGTCAAGCACTC 59 84665861 84665881 AATTTGTGAAGTGTTGGCTCC 60 Novel Rattus norvegicus 81 AABR07059875.3 ENSRNOG00000054870 ENSRNOT00000089845 3 1 1 98 4 39642536 39643145 TGAAACATTGGTCTGTAACAGG 59 39642459 39642477 CTACACGTGGGTCCATACC 60 Novel Rattus norvegicus 81 AABR07072704.1 ENSRNOG00000055170 ENSRNOT00000087761 1 1 1 80 2 44989159 44990832 GCGACTTCTTCAGGTTGTG 59 44990875 44990894 CTTACCATCCAGCTGAAAGC 59 Novel Rattus norvegicus 81 AABR07072984.1 ENSRNOG00000059602 ENSRNOT00000087184 3 1 1 82 4 43161599 43163815 TCTGCTTTCCATGAAACAAGC 60 43163856 43163877 CATGAAGTCAGACATTGTTGCA 60 Novel Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 2 1 1 74 2 49857573 49857591 GAGTGGTGGATCTGAAGTG 58 49857628 49908101 ATAATTTCACCATGTCCCGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 1 1 1 67 17 89510901 89511665 TACAGGAAGAAGCTGCCTC 59 89510852 89510875 CTCCATCGACATGATATAATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071294.2 ENSRNOG00000060099 ENSRNOT00000078188 1 1 1 83 8 108093599 108093617 ATTGTTTCTAAGGGCCGAC 58 108093663 108096899 ATCAGAGACAGGGAGTAAGG 58 Novel Rattus norvegicus 81 AABR07008287.2 ENSRNOG00000061261 ENSRNOT00000083266 2 1 1 80 2 51571967 51582153 GGACTTGGTTACAGAAGTCCT 60 51571907 51571927 ACTCTGACAGGAAGTATGAGG 59 Novel Rattus norvegicus 81 AABR07045015.1 ENSRNOG00000054550 ENSRNOT00000084794 3 1 1 82 20 31695980 31696478 TTACGAAATGCCCATCCTG 58 31696524 31696542 ACACAGGAAGTCTAGACGG 59 Novel Rattus norvegicus 81 AABR07045086.1 ENSRNOG00000057977 ENSRNOT00000078257 3 1 1 60 20 33744716 33744738 CATTAACTGTTCCTGTCATCCTC 59 33744758 33771992 CAGAATGGACCTATGGGTG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 2 1 1 60 4 59196421 59202838 AAACTTTACTACTGCTGAGGG 58 59196381 59196401 GTAAACTCTAGCACGTTGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060153.1 ENSRNOG00000061626 ENSRNOT00000087810 2 1 1 80 4 59288801 59288821 AGCAGGAGAAGAGAATTCTCC 59 59288089 59288762 ATAGTGACTTCTGGTTGACTCC 60 Novel Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 1 1 1 69 4 63631540 63698671 GAACAATAGAAGGCGAAGATAGC 60 63631493 63631511 TAGAAGGGAGGTAGGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000077266 1 1 3 80 2 59878683 59878822 CAGCAACTGCATTCAGTAGG 59 59878861 59878883 TCGGAGAATGAGTTCTAGAAGTC 60 Novel Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 3 2 2 80 4 68424649 68424669 TAAAGAACTCCACAGCAACTC 58 68424708 68425221 GAAGGTTCATTCATGTCAATCC 58 Novel Rattus norvegicus 81 AABR07045399.2 ENSRNOG00000054538 ENSRNOT00000082658 2 1 1 87 20 46164633 46166343 TCTGTGGAGGTTCTTCAGC 59 46166394 46166412 CTGTGGAAGTCCTCTGTGG 60 Novel Rattus norvegicus 81 AABR07008485.1 ENSRNOG00000061419 ENSRNOT00000087846 3 1 1 62 2 61038800 61038819 ACAGGATGAAACGTACTCAC 58 61038587 61038608 TCAAGATAGCAGATTAGCTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008491.1 ENSRNOG00000059296 ENSRNOT00000082976 2 1 1 82 2 61496064 61507496 AGAAGACTAAAGGGTTCATGTG 58 61507537 61507557 GATAAGGTAAATGGTAGCCGA 57 Novel Rattus norvegicus 81 AABR07071543.1 ENSRNOG00000060423 ENSRNOT00000080802 1 1 1 80 8 121433467 121434760 AAATGAGAGCATCAAGTGGT 58 121434802 121434821 GGTCATTAGGAGTTCATGGT 57 Novel Rattus norvegicus 81 AABR07045416.1 ENSRNOG00000060212 ENSRNOT00000078817 3 1 1 84 20 46936888 46936906 TGAGGACAAGAAGCTGGAC 59 46936952 46937417 TACCTATGGAGCTAGCAAACG 60 Novel Rattus norvegicus 81 AABR07060560.1 ENSRNOG00000052084 ENSRNOT00000087410 2 1 1 83 4 80474889 80474909 GAGAAAGCAAAGGATATGCAG 57 80474326 80474844 GCGATGAGTCCTTTACTCC 58 Novel Rattus norvegicus 81 AC096072.1 ENSRNOG00000052736 ENSRNOT00000080286 1 1 1 62 4 81789788 81789806 TAATGGTTCGAACGTTCCC 58 81791888 81791906 ATTCTTCTGTTCGCTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071659.2 ENSRNOG00000053160 ENSRNOT00000089661 2 1 1 98 8 126082687 126082706 AACTACCAAACTCCAAGCCA 60 126082508 126082626 TAGCCAAACAGAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07008898.1 ENSRNOG00000059376 ENSRNOT00000091379 3 1 1 113 2 77667182 77667202 CTAGGCAGTAGAAGAGACCTG 59 77667277 77670350 GTTTCATGCCTCTGTGCTG 60 Novel Rattus norvegicus 81 AABR07058711.1 ENSRNOG00000061588 ENSRNOT00000084840 3 1 1 63 7 134419369 134419387 CTATCGAAAGGCAGAGCAG 58 134419644 134419664 GCAGATATTAGCCACAAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.3 ENSRNOG00000056389 ENSRNOT00000079701 1 1 1 172 19 52065972 52065990 GACCCAGAGTCCTTGACAG 59 52066125 52067118 AGTACTGGTATCACCTTGGG 59 Novel Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 2 1 1 82 8 128962606 128964256 ATCACTGTCCATGAGCAGG 60 128964300 128964320 ATGATCCTTTACAGGATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 3 1 1 83 8 128962606 128964256 ATCACTGTCCATGAGCAGG 60 128964300 128964321 AATGATCCTTTACAGGATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008991.1 ENSRNOG00000057131 ENSRNOT00000079647 3 1 1 83 2 82507339 82507357 ACCTGTAGCTGACAATCCT 58 82506467 82507295 GAAGCTCTGCAAGAATATTCTG 58 Novel Rattus norvegicus 81 AABR07071811.1 ENSRNOG00000055245 ENSRNOT00000087862 2 1 1 105 8 131603556 131603841 TCAACAAGCCATAGGAGTGG 60 131603470 131603488 ATCACAGCAGGATCTGCAG 60 Novel Rattus norvegicus 81 AABR07058805.1 ENSRNOG00000055438 ENSRNOT00000089767 1 1 1 80 7 138228629 138228648 GTTGCTGTTGCTATCTGAGG 59 138228691 138228871 TGAGTCCCAGAATTCCTGC 59 Novel Rattus norvegicus 81 AABR07044173.1 ENSRNOG00000055152 ENSRNOT00000077683 3 1 1 81 19 61511736 61511755 AGATGCTGGGATGTATCCTG 59 61511799 61536443 CTAGGCTTCTGTTCCCTGG 60 Novel Rattus norvegicus 81 AABR07009357.2 ENSRNOG00000060543 ENSRNOT00000086398 1 1 1 80 2 94302510 94303487 AACTTGTCAGTCCTAGGGA 57 94303531 94303549 CAGATATTCCCGCTTCCTG 58 Novel Rattus norvegicus 81 AABR07009426.1 ENSRNOG00000052217 ENSRNOT00000078602 3 1 1 86 2 97249675 97263544 GGGAAGTTCAGGTGTTCAC 58 97249607 97249625 TATATCCGCCCTTCTGCAG 59 Novel Rattus norvegicus 81 AABR07009428.1 ENSRNOG00000055685 ENSRNOT00000077090 1 1 1 118 2 97674518 97674537 GATTCATCTTCCAGCCAGAC 59 97672699 97672718 CGACAATGATGGTGGTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007088.1 ENSRNOG00000052677 ENSRNOT00000088126 3 1 1 80 1 280348253 280348271 GGAAGGACGTCCTCTAGTG 59 280347382 280348212 CACTCCATTCAGCTGTAATGTC 60 Novel Rattus norvegicus 81 AABR07010107.2 ENSRNOG00000055621 ENSRNOT00000081435 2 1 1 61 2 123906648 123906666 CAGCTGAAAGGCTTCACAC 60 123907509 123907528 CCAGTTAAGTCTGAAGGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010155.1 ENSRNOG00000054869 ENSRNOT00000083082 1 1 1 80 2 127249173 127249346 TGCTCAGGAGTTATCAACAC 58 127249112 127249133 TCAGTTAAATGTACAGACTCGG 58 Novel Rattus norvegicus 81 AABR07010592.1 ENSRNOG00000053561 ENSRNOT00000083742 1 1 1 80 2 142167882 142167901 CGCTAACATTGTTCTGTGGA 59 142167944 142168059 CATCTGCCTTTCTGCTCTG 59 Novel Rattus norvegicus 81 AABR07010592.1 ENSRNOG00000053561 ENSRNOT00000083742 3 1 1 80 2 142167884 142167905 CTAACATTGTTCTGTGGAGTCC 59 142167946 142168061 TCCATCTGCCTTTCTGCTC 60 Novel Rattus norvegicus 81 AABR07011084.1 ENSRNOG00000057289 ENSRNOT00000086020 2 1 1 80 2 157359157 157359178 CCTTTGAATGTGTCTCTATGGT 58 157359217 157360148 ATAAACCTCTTCCACACTTGG 58 Novel Rattus norvegicus 81 AABR07012053.2 ENSRNOG00000053765 ENSRNOT00000090222 1 1 1 119 2 184123024 184123043 TGACAGTGGTACCTTATGTG 57 184111943 184121818 AATCCCATTTCCCTTCTGC 58 Novel Rattus norvegicus 81 AABR07012053.1 ENSRNOG00000053340 ENSRNOT00000083998 1 1 1 80 2 184138881 184144468 GAATCCAAGATGCCGATGG 59 184138819 184138837 TAAGAGATCCTGCCACTGG 59 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 3 1 1 110 14 8895755 8895773 CTATGAGATGGACCTCGGT 58 8894487 8895681 TTCACCATCCAGTGAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014387.1 ENSRNOG00000055646 ENSRNOT00000084435 2 1 1 70 14 13521372 13521390 CAGTGTGCAGCTTTACTGG 59 13524429 13524447 TTCAGGATCAGGAAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014638.1 ENSRNOG00000060037 ENSRNOT00000086758 1 1 1 60 14 24182804 24182822 AACATGTCATCAGGGAGCC 60 24187962 24187981 TCATCGAGGACTTACTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014638.1 ENSRNOG00000060037 ENSRNOT00000086758 2 1 1 60 14 24182804 24182822 AACATGTCATCAGGGAGCC 60 24187961 24187981 TCATCGAGGACTTACTTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012752.1 ENSRNOG00000052852 ENSRNOT00000079480 2 1 1 90 2 205686938 205686958 ACTGGAAGAGTAACAGTTGCT 59 205687010 205689122 TTGCATAGAGGAAGCCTGG 60 Novel Rattus norvegicus 81 AABR07012752.1 ENSRNOG00000052852 ENSRNOT00000079480 3 1 1 91 2 205686938 205686957 ACTGGAAGAGTAACAGTTGC 58 205687011 205689123 GTTGCATAGAGGAAGCCTG 58 Novel Rattus norvegicus 81 AABR07013023.1 ENSRNOG00000052101 ENSRNOT00000081752 3 1 1 97 2 219059811 219059829 GAAGGTTAAGCTGGCTGTG 59 219065142 219065160 GATGCTGTGAATCACTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013558.1 ENSRNOG00000051702 ENSRNOT00000091469 2 1 1 80 2 244026606 244034347 AATTACAAGGTCCCACCCTC 59 244026545 244026565 ACCTCCTCTGTTCATTCACTC 60 Novel Rattus norvegicus 81 AABR07013689.1 ENSRNOG00000054579 ENSRNOT00000080436 3 1 1 104 2 250459594 250459612 TGGTGACTTGGAAGGAAGG 59 250459674 250465080 GAATATAACTCCTCCCTTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 1 1 1 63 2 254280120 254285564 TGTGATGCAAGGTATGTTGTG 59 254285589 254285607 TTTGATGACCCAAGGACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 2 1 1 64 2 254280074 254280092 TCAAAGTGCGAAAGACACC 59 254280119 254285562 CAACATACCTTGCATCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 1 1 1 60 2 220663170 220663191 CCCATCTTGTTTCTTGAAAGAG 58 220647289 220647308 ATGACTTGATTCTTCCAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 1 1 1 66 X 57058435 57058453 ACAAGACTCGTTGGTCCAG 60 57058219 57058239 TTCGTGTCCTTCTTTGTAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC094811.1 ENSRNOG00000047066 ENSRNOT00000072177 2 1 1 60 12 25262545 25262564 CTGAACTCAGAGATCCTCCT 58 25262587 25262605 GTAGCTCGTGCCTTTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053298 ENSRNOT00000088944 1 1 1 60 4 135196883 135196903 GTGTCCCTCTAGAAGCTACAC 60 135196923 135196943 CCAATACCCTTGACCAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 1 1 1 69 16 20108505 20108523 TTTACGGAAAGTCAGGGCA 59 20108449 20108468 GCACAGGTTTCTAGTCTACC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000057756 2 2 5 80 6 114835046 114835067 CTGCTAGAAGAGACTCAAAGGA 59 114783594 114818951 TCGGGTACTCATCTGTAATGC 60 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000074349 2 1 4 83 5 77725020 77725043 GAGAGTGCAGGAAACTATATTCAG 59 77724270 77724981 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000073954 1 1 4 87 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77901512 77902221 GTATTCCCTCCGTCAAACTC 58 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 1 2 2 80 9 4269289 4269309 AACTGGAGTCAGATTCAGACC 60 4269349 4269717 CCATGTTGTCCCTGATTTAGG 59 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043 1 1 2 85 10 4487999 4488719 CAGGCGACGATAAGAAAGG 58 4488768 4488786 TCACTCCCATTCAACAGCA 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968 1 1 3 106 X 65455501 65559766 ACAAGGAGGATGGTCACAG 59 65455413 65455431 CTGTCGAACAAAGCTTGCT 59 Novel Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 1 1 1 61 2 78283229 78283248 TGATGTGAAATGGCAGTCAC 59 78283134 78283152 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000059788 ENSRNOT00000089413 2 1 1 61 1 116746403 116746424 GACAACAGAAAGTCAAGAACAG 58 116746363 116746383 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052568 ENSRNOT00000087299 3 1 1 60 1 251102196 251102214 AGTTGGAATAGGAGCTTGC 58 251102237 251102256 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053938 ENSRNOT00000091915 1 1 1 60 1 56864841 56864862 ACTACAGAAAGTCAAGAACAGG 58 56864802 56864822 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054445 ENSRNOT00000082413 3 1 1 60 12 29367144 29367164 GAATGGAGCAGAAAGATAGCA 58 29367104 29367125 CGAATCCATGAATGTATGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 2 2 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164331 75167554 CCAGAATAAGAGCCTTCATCCT 60 Novel Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 2 1 1 60 19 37021481 37021502 ACCCAAGTACACATGATTTCAG 59 37021282 37021300 GTTTGTTGCAGTGATCGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000089439 3 1 4 90 1 49618239 49681763 CCAGAGGTCCAGCTAAACC 60 49618167 49618185 TGAACTCGGAGTTTCCCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056667 ENSRNOT00000084890 1 1 1 62 1 91464538 91464556 CTATGCGCCAGTAGGAGTC 60 91464582 91464600 CACAGGTCAGAATGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000076934,ENSRNOT00000029245 1 3 3 117 X 73667467 73667485 TTCACAAGCATGCCAAGAG 59 73666603 73666911 CCATGAGAACTTCCCTCCC 60 Novel Rattus norvegicus 81 AABR07042609.1 ENSRNOG00000051666 ENSRNOT00000078232 1 1 1 81 19 275690 276869 AAGAACAGGCCCTACTTCAG 60 276912 276931 TGTGCAGAATTGACATGACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055132 ENSRNOT00000084843 2 1 1 60 6 83452075 83452095 TTCCTTCAATGTCCATGTGAG 58 83452116 83452135 GAGAAGGCCTCTTCTACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013918.1 ENSRNOG00000051010 ENSRNOT00000073367 2 1 1 61 2 262917886 262917904 TTTGTAGACCTGGCTAGCC 59 262917929 262917947 CAGGACTCAGGAGTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068154.1 ENSRNOG00000027719 ENSRNOT00000038372 3 1 1 74 9 86257217 86257236 AACAAAGGAGTCAAGCTGTC 59 86257160 86257178 TAGCACAGAACAGTAACCG 57 Novel DesignNoJunction Rattus norvegicus 81 AC139391.1 ENSRNOG00000045604 ENSRNOT00000072004 3 1 1 84 18 73563743 73563762 GAATAACGTAAAGGGCCAGG 59 73563676 73563694 CCATGCAAATGCTCGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012039.1 ENSRNOG00000061763 ENSRNOT00000081080 1 1 1 83 2 183250819 183250888 CGTTTATAGAAGATGATTGGGAAGG 60 183250760 183250779 TTTCTCCACTGTCCTCACTG 59 Novel Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 2 1 1 60 12 2262068 2262088 AAACTAGAAACCTGTAGTGGC 58 2262027 2262047 CCATGAATCTAAGTGCACACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 3 1 1 64 19 426209 426227 CCTGAGGTTCCTGACAGAG 59 427427 427445 ATGGATTTGGCCTGAAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 3 1 1 118 2 78427509 78427527 TGATCTGTATGCCAACCCA 59 78427356 78427374 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 3 2 4 114 X 73466671 73467008 TCATGAAGGGTTTGATGGAC 58 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054095 ENSRNOT00000090578 1 1 1 60 13 54317121 54317140 CATTTGGTGGCAGAGATGAG 59 54317080 54317098 TCATTCAGATGCTCACAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059396 ENSRNOT00000083945 3 1 1 60 19 17244656 17244675 GAGAAAGATTGGTCTTCGGT 58 17244698 17244716 GGCTGTCATCTATTGGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021688.1 ENSRNOG00000050203 ENSRNOT00000070867 2 1 1 60 13 85549818 85549836 GACTCTTGTTACAAGCGCA 59 85549776 85549795 AGAAATGCAGAATCTCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020058.1 ENSRNOG00000048245 ENSRNOT00000073312 2 1 1 60 13 12662279 12662298 GGAAAGAAAGCTCTTCCCTG 59 12662320 12662339 TGATCATCTGAGGATGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020058.1 ENSRNOG00000048245 ENSRNOT00000073312 3 1 1 60 13 12662278 12662296 AGGAAAGAAAGCTCTTCCC 57 12662320 12662338 GATCATCTGAGGATGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057432 ENSRNOT00000088028 2 1 1 60 18 25401876 25401895 CTAGAAGCATTGCAGGTGTG 59 25401835 25401855 TCTCTGTTATGCCGTCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 2 2 2 80 4 164047279 164047298 GATTGGATGTCAACAAGCCT 59 164042717 164047238 CGAAGGAACTTCAGTTCATCC 59 Novel Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 1 1 1 60 10 28192462 28192480 CCACTCCCTGTTAGATCCC 59 28192503 28192524 CTTGATTCAAATGGTGAGTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 2 1 1 79 1 234836371 234836390 ATCCCTGAAAGAATTCCAGG 57 234836239 234836260 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 1 1 1 76 2 26870118 26870136 CCACCTGTGGTCTTAAGGG 60 26869964 26869982 TTGTTACCACCTCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056 1 1 2 123 10 89173873 89174661 CACAAGGTCAATGCTGAGG 59 89174748 89174988 TAACGTAAAGAAGGGCGGG 60 Novel Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 3 1 1 61 7 380942 380960 CAGTTCAGCAACCTCTACG 58 381677 381695 TGGAGATGATGCCATTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 2 2 3 61 20 4871819 4871839 CATCTCATTGTCTAACAAGCC 57 4871531 4871549 TTTGAGTAGCAGCTAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 2 1 1 71 20 47733473 47733491 AACATCTTGGAGGAAGCAG 57 47733420 47733438 TTGATGGGTCCAAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 2 1 1 61 18 2189054 2189078 GAAGTACAAGTAGGTTCCTTAAGAG 59 2195778 2195796 CAGCACTCAACCTCTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 3 1 1 64 18 2189049 2189071 GACTAGAAGTACAAGTAGGTTCC 58 2195776 2195794 GCACTCAACCTCTTCACCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 1 1 1 60 5 36435071 36435091 AGCTTCTACTGATCTTCAGCA 59 36434016 36434037 ATTTGACTAAGACGTACTCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 1 1 1 60 5 46314596 46314620 GAGAATACGGAACAGATACTTATGG 59 46306974 46306996 GACATCTTCTGAAATCCACTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 3 1 1 77 5 58031738 58031759 TGATAGCATCAAATGGCTTCTG 59 58022462 58022480 CATGATGCAGGACTTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 2 2 3 87 1 19639162 19639280 CATTGATGTATCTGCAACTGCT 60 19639096 19639116 CTCGTTGATGTTCTGGATGTC 59 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 1 1 1 60 14 93085263 93085281 CAGAAGTCCATGGAACCTG 58 93086750 93086768 TAGTTGCAGGATTCCATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 1 2 2 94 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159818 93159838 CTTCAGATCTTGAAGTTCCGT 58 Novel Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 2 1 1 65 4 176075823 176075841 ATGTCGGTGACATCCACAG 60 176076545 176076563 GCCTCTTCTCTTGCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 3 1 1 69 4 176075823 176075841 ATGTCGGTGACATCCACAG 60 176076549 176076567 TAGTGCCTCTTCTCTTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 3 1 2 64 18 50434462 50434480 CACTTCAGATTGGGAGAGC 58 50430228 50430249 CCTTTCTCCAGTTCCTAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 3 1 1 110 6 38807479 38807498 GGAGCTTCAACCACAAAGAC 60 38806205 38806223 GTTAGAGCAACAGAGCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 1 1 1 61 1 70055250 70055268 CCAGAAGAACCAGAGGAGC 60 70071746 70071764 TGGAATCAGGGATGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 2 1 1 62 1 70055249 70055267 TCCAGAAGAACCAGAGGAG 58 70071746 70071764 TGGAATCAGGGATGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 3 1 1 122 3 3955828 3955846 AAGGCAGAGCTTCTTAGCC 60 3956367 3956385 AAAGAGGTTAGGTGCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 1 1 1 97 1 95240941 95240959 AACAATGACAACAGCAGCA 59 95241708 95241726 TCAGCTCCAATCTTGGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 2 1 1 74 1 97089813 97089835 GTCAATAAGGGATCACAAGACTG 59 97084669 97084687 AAGTTTCGAGCCTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058 2 1 2 93 6 119129183 119137132 TTCTGTGATTGCTGTCGGA 59 119137189 119137207 ATTGGAGTGAGGGAAAGGC 60 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000086332 1 1 2 80 9 604417 604441 CTTCCCTTAGGTTCATTTATGAGAC 59 604267 604379 CATTGATGATGCTGCCGAG 60 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 3 2 2 100 6 129000925 129000943 TCCTGAGATTGTGATCGCC 60 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 1 1 1 60 3 71664833 71664852 TATGACAAATGCTGCTTTGG 57 71666555 71666573 AACAACTGAAGGCTTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000085147 3 1 3 86 12 3223498 3223516 AGGTGTAGGCTTGACAGTG 59 3223564 3224156 CATGCTGAAGCCCTTTAAGAC 60 Novel Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 1 1 1 76 12 6233476 6233494 GCAGGGAACAGAAACAGAG 59 6233794 6233812 AGTTATCAGCTCCCATCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 2 1 1 68 9 4621519 4621539 TCCTCAGTAAACCCACTTTCC 60 4622742 4622760 TCTGGGCCACAGTAAAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 1 2 2 88 12 22369855 22369876 TGGCTTTGTGTTCAATAAGGAC 60 22369925 22370340 TCTTACCTGCCGGAATGAG 59 Novel Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 2 2 2 82 1 200364478 200364499 CTGTAAAGTCACCAAGATTGCT 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 2 1 1 60 12 50979102 50979121 GGAGTGCTGTGAATATCCCA 60 50979860 50979880 AGTCAACCAAACATGTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 3 1 1 60 12 50979105 50979123 GTGCTGTGAATATCCCAGG 58 50979864 50979883 GTCAGTCAACCAAACATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 3 1 1 68 16 78903740 78903759 AGAGGTGGAATTTAGGTCCT 58 78880272 78880290 GTCTCCTCTGTGTAAACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000087267 3 1 2 91 X 35972463 35972481 GGAAATGGACAGTATCGGG 58 35971855 35972408 TTCCAAATGACACCTGGTC 58 Novel Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 3 1 1 68 1 244877697 244877715 AATCAAGGAAAGGAGGCCA 59 244907914 244907932 CTCTAAGTGCACTGGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 3 1 1 112 7 28372076 28372094 TTAAGCTAACGGAAGTGGG 57 28372331 28372351 ACAAGATCTGGAGGTATTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000078748 3 1 3 81 8 23492888 23492906 AGCTTGTGTTACTGCTTGG 58 23492950 23509002 TTCCTTTCAACCTCTTGGTC 58 Novel Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 1 1 1 70 1 274175054 274175072 CAAAGGAAAGGCAAGCAGG 60 274172640 274172658 ATGCTTATGCAGAAGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 3 2 2 80 10 196629 197045 CCAGTGGATTCAGGAACGA 59 196567 196587 CAGAAGATGTCAGTCATCCCA 60 Novel Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 2 2 2 80 X 113550887 113550906 CCTGCAAACAACTATGGGTG 60 113550949 113581954 CTGAGGAGGTGTCTTTCCA 59 Novel Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 1 1 1 60 2 22867888 22867908 TCTTTGGTACTTGTTTGCCAG 59 22864576 22864595 ACCAAATCCACAGAGGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 3 1 1 60 8 56024591 56024610 CAAGTCACTGCCAATCACAC 60 56024035 56024056 GTTATAGCTTTGTCCTTCGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 3 1 2 92 X 149274240 149274258 AAGAAGTGCTGGCTCAGAG 60 149279815 149279834 TGTACTGCTGGAAAGAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 3 1 1 79 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56879336 56879356 GTGTGATCAAAGGTGAGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 2 1 1 61 2 38743654 38743672 CAATGCTTGGCTCCTTCTG 59 38745791 38745810 TGTCTTTCAAGGACAACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 2 1 1 60 8 89236944 89236965 CAGGATCTCTTCACAATGACAG 59 89235841 89235864 GAGGGAAACTGTTATTCTCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 2 1 1 60 17 86214922 86214941 CACAATGTGAGGCACATCTG 60 86214791 86214809 TTCAGTTTCTGGAGACCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 1 1 1 61 20 24445704 24445722 ACAACAGACACTCCTGGAC 59 24445311 24445332 CTGTGAGATATCATTGGAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000078712 3 1 2 81 4 68437729 68440073 CAATTCAAACCTGAAGGTTGC 59 68440115 68440134 GTAGATGTCCCACTCAACTG 58 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 1 1 2 82 7 131431132 131431150 GAAGTCTGCTGAGACATGG 58 131397414 131431086 ACTTCATGGGAGGTCTCAG 58 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 1 1 2 60 7 134985951 134985969 TAAGGCCGAACAAAGACCA 59 134988445 134988465 ATTCTATCACAACGGGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 2 1 1 98 2 119558768 119558786 TGAAATGCCCAGCATACAC 59 119560978 119560998 CCTGCAGAAATATCCTTTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd2 ENSRNOG00000031033 ENSRNOT00000040993 2 1 1 60 MT 4768 4789 AGCCTATTCTTCTATACACGAC 57 4809 4828 TGTTGGTTGGGAATATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmnat1 ENSRNOG00000015962 ENSRNOT00000048914 1 1 1 80 5 166419352 166419370 AACCCAATCACCAACATGC 59 166417258 166419314 GATAACTTTGTATTCTCCTGTAGCG 60 NA Rattus norvegicus 81 AABR07012317.1 ENSRNOG00000049173 ENSRNOT00000072995 2 1 1 84 2 193063291 193063309 CCTCCTAAGTGTCAAACCC 58 193063225 193063243 TACAGCAGGAAGACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152,ENSRNOT00000038543 2 2 2 80 2 178277458 178279751 AGTACCAATACACGAGACCA 58 178277397 178277417 CTTTGTAACTCATTGCGACAG 58 NA Rattus norvegicus 81 Tssk4 ENSRNOG00000019789 ENSRNOT00000026819 2 1 1 88 15 34329183 34329541 CGTGAGATACAGGTAATGAAAGTC 59 34329588 34329606 ATGATGTACACTCGGGACG 59 NA Rattus norvegicus 81 Sec24b ENSRNOG00000023373 ENSRNOT00000038509 1 1 1 80 2 230298298 230298781 TACCAAAGGACTTTCGATGC 58 230298237 230298256 TTGATGTTGGCAAGAGACAG 59 NA Rattus norvegicus 81 Dffb ENSRNOG00000025030 ENSRNOT00000032825 1 1 1 80 5 171259904 171259923 GACCTTCTGCATCATGTGAG 59 171258004 171259862 AGACTCCAAACCTTCAAACC 58 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 2 3 3 80 3 3828468 3829622 CACACGCATCTATAAAGCAG 57 3828407 3828427 TTCTGTCGATAGACTTGAGGA 58 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027931 1 1 3 80 15 34864069 34864484 ACAAACAGCATACACTGGAG 58 34864523 34864545 GGATGCCCATAAGATACAATACC 59 NA Rattus norvegicus 81 RGD1560334 ENSRNOG00000003860 ENSRNOT00000005120 1 1 1 60 X 43832183 43832201 CAGAACCCTACCAATGCTG 58 43832225 43832243 TCAGCTCATTGTTCTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910479 ENSRNOG00000048079 ENSRNOT00000073707 1 1 1 60 20 638130 638149 AAGCACTGATGAGGTTAAGG 58 638089 638107 GATCCACAGGTTCCAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682408 ENSRNOG00000050215 ENSRNOT00000071981 3 1 1 119 20 3706725 3706743 GAAAGACTGGCTCCAACAG 59 3706597 3706615 CTGAAGAACTTCCCTGGGA 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911669 ENSRNOG00000049874 ENSRNOT00000074860 2 1 1 85 5 135030108 135030126 ACTGATCCGTCTTCTGTGG 59 135030173 135030767 TGTCTGAGAACTTGAGGTGAG 60 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581,ENSRNOT00000084758 2 2 2 80 8 64184030 64184050 AACCAGAACTGTAAAGCAGAG 58 64179763 64183989 GTTACAGTTGTACCAGGCAG 59 NA Rattus norvegicus 81 Vom1r25 ENSRNOG00000030899 ENSRNOT00000050899 2 1 1 60 8 3541028 3541046 TCTACCCTCGAACTATCCC 57 3541067 3541088 GTTGTCACCAAGATAAGAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r25 ENSRNOG00000030899 ENSRNOT00000050899 3 1 1 60 8 3541028 3541047 TCTACCCTCGAACTATCCCT 59 3541067 3541088 GTTGTCACCAAGATAAGAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amy1a ENSRNOG00000033529 ENSRNOT00000022496 1 1 1 80 2 216438662 216438682 GCTGGGTTGATATTGCTAAGG 59 216438278 216438620 CATTGGGTGGAGAAACCTG 59 NA Rattus norvegicus 81 Crybg3 ENSRNOG00000001687 ENSRNOT00000002292 3 1 1 80 11 42971893 42971914 ACATAATCTTGTCAATCCGACC 59 42972828 42978290 TACTGAATGCTTTGAGCAAGTG 60 NA Rattus norvegicus 81 Hcn1 ENSRNOG00000055382 ENSRNOT00000089218 2 1 1 80 2 50155719 50339467 CCAGTGGGAAGAGATATTCCA 59 50339509 50339527 AGCATCATGCCAATGAGGT 60 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049877 ENSRNOT00000071644 3 1 1 60 8 41235245 41235266 CTTCTTGGGAATCTATGTGGTC 59 41235284 41235305 AACAATCAGAACAATCAAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911145 ENSRNOG00000048134 ENSRNOT00000073467 2 1 1 80 11 46163695 46165974 ATCTGACAAGCACAAAGAAGG 59 46166014 46166034 AGGTAACTCCAAAGACAACAG 58 NA Rattus norvegicus 81 Htr1f ENSRNOG00000000716 ENSRNOT00000000907 2 1 1 60 11 1982798 1982818 CGGATGATAAAGGAGGAACTG 58 1982758 1982779 TAATGCTCTTCTCACCACTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcrl2 ENSRNOG00000016164 ENSRNOT00000021938 3 1 1 80 2 186605082 186606151 TTGATCTTTACTCCTGTCGG 57 186602912 186602932 TACTTGGTCTCCTTCATAAGC 57 NA Rattus norvegicus 81 Hmgn1 ENSRNOG00000048226 ENSRNOT00000075126 2 1 1 98 11 39482929 39485177 CGGGAAAGGATAAAGCATCAG 59 39485235 39485255 GATCTGTAGTTTGCTGGTCAG 59 NA Rattus norvegicus 81 Sh3bgr ENSRNOG00000028238 ENSRNOT00000064981 1 1 1 80 11 36570773 36570792 AATCTGAGGAAGCGTCTTCC 60 36570835 36571654 CAGCCTTCTCTGTTCCCTC 60 NA Rattus norvegicus 81 Sh3bgr ENSRNOG00000028238 ENSRNOT00000064981 2 1 1 84 11 36555594 36560734 GGGTCCATAGCGATTAGGA 58 36560779 36560800 CTATGTCCAGCTCCTTAAAGTC 58 NA Rattus norvegicus 81 Rps20 ENSRNOG00000008555 ENSRNOT00000011314 3 1 1 81 5 16706259 16706552 CATGCCTACCAAGACACTG 58 16706196 16706214 CATCTGGAAACGATCCCAC 58 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748,ENSRNOT00000090705 2 2 2 80 2 248738345 248738570 TAATGAGAAGGCTGTTGAGGA 59 248738285 248738304 GGTGCTTCTTTACATCCTCG 59 NA Rattus norvegicus 81 AABR07069837.1 ENSRNOG00000049187 ENSRNOT00000075103 1 1 1 80 8 41147483 41147501 TTGACTTGCACAAGAACGA 58 41146352 41147441 CACTTTCTGAGACCAGATGTG 59 NA Rattus norvegicus 81 Kif9 ENSRNOG00000020891 ENSRNOT00000028364 2 1 1 80 8 118782142 118784401 GACCAGTTCAGCTCCTCAG 60 118784440 118784463 GGAGATGGAAGTCATATCAAAGTC 59 NA Rattus norvegicus 81 LOC686660 ENSRNOG00000049480 ENSRNOT00000071063 1 1 1 60 1 170206033 170206051 CACTGACACTGAAAGTCGT 58 170206074 170206093 TTAAATCGTACCACCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc4l ENSRNOG00000029749 ENSRNOT00000017012 1 1 1 64 2 130658110 130658128 TAAACAGTGTTAGCCAGCG 58 130657531 130658082 ATGTGTCTTCCAGGTTCCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 2 2 2 81 8 132730832 132730851 TTATCTACTTGGTCCGTGGC 60 132729896 132730788 AGCTGCTCCATCTTAGGTG 59 NA Rattus norvegicus 81 AABR07002418.1 ENSRNOG00000048238 ENSRNOT00000072649 3 1 1 81 1 73423035 73423166 CTCCTGGCTTATCTCAAGC 58 73423210 73423229 GGGTTCCAAAGATACAAGGG 58 NA Rattus norvegicus 81 LOC100910174 ENSRNOG00000048934 ENSRNOT00000043157 2 1 1 60 1 22365432 22365450 TGTGGTGGCATTTATGGTC 58 22365472 22365492 GAAAGCATCAATCAAGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr119 ENSRNOG00000033350 ENSRNOT00000044641 3 1 1 60 1 168795196 168795214 TAACATTGACCACCATGCC 58 168795154 168795175 CCAATTTCCCTGTGATTTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubtd1 ENSRNOG00000013813 ENSRNOT00000018485 3 1 1 154 1 261278080 261278098 ATGAGTTCTGGGACACAGC 60 261278215 261279492 ACAAAGAGTTCCATGAGGCA 60 NA Rattus norvegicus 81 Impg2 ENSRNOG00000001622 ENSRNOT00000044900 1 1 1 80 11 46628355 46629088 TCTTAGAACTGCTGGTTCCC 60 46628294 46628313 TGCCATTTCTGAAGTTCAGG 59 NA Rattus norvegicus 81 Nmb ENSRNOG00000011011 ENSRNOT00000014639 1 1 1 80 1 142723131 142723149 GATCTGCTCAGGATCCTCC 59 142721519 142723087 CCTCCTGTACTGGATTGGG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000052129,ENSRNOT00000089371 3 3 6 81 1 76612918 76612936 GACCACGACTCATAACCTC 57 76604208 76612873 AGATAGATCACCTTGGCCT 57 NA Rattus norvegicus 81 Zcchc3 ENSRNOG00000007520 ENSRNOT00000009859 1 1 1 60 3 147879411 147879429 AGAACTTTGTGGTCTTGGG 58 147879369 147879387 CGGAAGAGGATGAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681,ENSRNOT00000088131 1 2 2 80 2 170286474 170286495 AATTACGGGTCATTAGACACTG 58 170285387 170286435 AGTGACTTGTGCATCATATGG 59 NA Rattus norvegicus 81 Slc2a12 ENSRNOG00000011161 ENSRNOT00000015566 2 1 1 80 1 24014510 24014532 GTTGTTCTGTTTATACCCGAGAC 60 24005843 24014471 TTTCACATAGTTCGCCTTCG 59 NA Rattus norvegicus 81 Agxt2 ENSRNOG00000017821 ENSRNOT00000024035 3 1 1 80 2 60344664 60347133 GAGAAATACCAGTCTCTGGC 58 60347173 60347194 GAAATAGGCTGTATTCACAGGA 58 NA Rattus norvegicus 81 Gys1 ENSRNOG00000020812 ENSRNOT00000028271 2 1 1 80 1 101432505 101432523 GCCCATGTCTTCACTACAG 58 101432565 101434140 GGTCACAATATCTGGTTTCCT 58 NA Rattus norvegicus 81 Cd19 ENSRNOG00000018311 ENSRNOT00000055027 2 1 1 80 1 197817834 197817969 AGACATGAAACAGGACTGG 57 197817772 197817793 ATTCTCATAGAATTCAGAGCCC 58 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942,ENSRNOT00000024018 2 2 2 80 1 219176688 219177012 GTTTCTTCCACTTGAGCTTCG 60 219177053 219177072 TGTGGTTCAGGTCATACAGG 60 NA Rattus norvegicus 81 Mpzl1 ENSRNOG00000003248 ENSRNOT00000004376 3 1 1 81 13 83815973 83816943 GGAAATAGACAACCTGCTGG 59 83815911 83815929 GAGTAGAGTGAGCCCAAGG 59 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000028731 2 1 2 80 1 222246313 222246331 GAATGAAGTGAGGCATGGG 59 222245176 222246271 TAATTAGTAGGGACAGGCCTG 59 NA Rattus norvegicus 81 Mcpt8l2 ENSRNOG00000049096 ENSRNOT00000073555 1 1 1 97 15 34623319 34623337 AACACCCAGGTCATCTCTG 59 34623017 34623258 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 LOC307727 ENSRNOG00000039726 ENSRNOT00000060930 2 1 1 78 X 10811685 10811703 TATCAGGCTCAAAGGGAGG 59 10811745 10818494 AAACTCCCTGAGTTCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Rps6ka3 ENSRNOG00000006632 ENSRNOT00000008938 1 1 1 80 X 37556231 37562206 ACAATGCTTACTGGTTACACTC 59 37562247 37562265 TCCACTACCTATTCGTGCC 59 NA Rattus norvegicus 81 Tada2b ENSRNOG00000027326 ENSRNOT00000037061 1 1 1 273 14 79446084 79446102 AAGTACTGCGTGTACTGCT 59 79454046 79454064 CAACATGAGCAGCCATGTC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 3 1 2 66 X 58181490 58181510 CAACATTCAGGCACTAATGGT 59 58112915 58181283 AAGGATAACTGATGCATTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp664 ENSRNOG00000021705 ENSRNOT00000001338 2 1 1 60 12 37185101 37185120 CAAATGTGAAGAGTGTGGGA 58 37185060 37185078 TCTTTGATGCATGCAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 3 2 2 98 1 222319567 222319588 AGTATAAGAAGGACAAGCAGCT 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Olr338 ENSRNOG00000048005 ENSRNOT00000016484 2 1 1 60 1 229108364 229108383 CTGAATTCCTCCATCCACAC 58 229108400 229108424 CCACATTGGACTTACAGAAATAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr126 ENSRNOG00000029612 ENSRNOT00000043967 2 1 1 60 1 168883053 168883074 CTACAGAACTACCGTTATCTCC 58 168883014 168883033 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 2 2 2 80 13 94161156 94209028 AAATGTCGAATCGCTCTTGTG 60 94161096 94161116 GAAGAGCGGTAAGTGAAATGG 59 NA Rattus norvegicus 81 Rhbg ENSRNOG00000019412 ENSRNOT00000026396 2 1 1 80 2 187611762 187612231 TTATGGAGATGGCCTGCAG 60 187611700 187611718 AGCTGATACATGGCCTGAG 59 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 2 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316594 22316613 TCGATCTTCAAACTGTGCCT 60 NA Rattus norvegicus 81 Rab9a ENSRNOG00000030443 ENSRNOT00000050018 2 1 1 148 X 29525348 29525366 GAATAGCTCCCAGGACGTC 60 29546245 29546263 AACTCCACCATCTCCAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kcnh5 ENSRNOG00000009542 ENSRNOT00000013275 3 1 1 80 6 97977371 97977390 CCTTAGTGAACGAGTCATGG 58 97938338 97977328 ATGGAGAGGACCTTCTCTG 58 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 2 2 2 80 1 137969758 137969777 CCGATTGCTTAAGGTTCCAC 59 137969818 137971990 AGTCATACTCAAACTCACGCA 60 NA Rattus norvegicus 81 Epha6 ENSRNOG00000029184 ENSRNOT00000047310 3 1 1 80 11 42693610 42810624 GCTTATACAACAACTGGTGGA 58 42810666 42810684 CGCTGAGGAGAATTTCCTG 58 NA Rattus norvegicus 81 Ogn ENSRNOG00000029792 ENSRNOT00000020532 1 1 1 105 17 14616671 14616689 ATTGATGCTGTACCACCAC 58 14614017 14616603 TTAAGTTAGGCATGTCTGCA 57 NA Rattus norvegicus 81 Phex ENSRNOG00000023440 ENSRNOT00000010970 1 1 1 80 X 40624437 40624456 AAACCCGCAAGTATTTAGCA 58 40624497 40656058 TTGGGTTTGTAAACCACTCTG 59 NA Rattus norvegicus 81 Gucy2e ENSRNOG00000015058 ENSRNOT00000020513 3 1 1 80 1 163412015 163412586 CTTTATCAGGTTAGGCCTCCA 59 163412628 163412646 AAGGTGAGCTCTTGAGGTG 59 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000086893 3 1 2 80 18 30956986 30957006 ATCCCGTGTTCTATAGACAGG 59 30957526 30958883 AATGCCACAGTATGCATGG 59 NA Rattus norvegicus 81 Zfp513 ENSRNOG00000005298 ENSRNOT00000050102 3 1 1 80 6 26538306 26538325 GAGGAAGAGGAAGAGGAGGA 60 26538366 26539143 CTGAGAGTCTCCTTCAGAGTC 59 NA Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000072122 1 1 2 80 1 66959792 66969369 GCCGAAAGACGGTATTATAGAG 59 66969410 66969428 GACAGAGTCTGTGGAATGC 58 NA Rattus norvegicus 81 AABR07007130.2 ENSRNOG00000042665 ENSRNOT00000047645 3 1 1 80 1 282498800 282498819 ATCGTTCCCAGAAGAGTCTC 59 282498538 282498760 CTTCCCAATTGTAGCCTATAGC 59 NA Rattus norvegicus 81 Prl8a2 ENSRNOG00000017048 ENSRNOT00000022923 3 1 1 81 17 39571296 39572131 TTGTAACACTGGTTGCACG 59 39571233 39571251 TTTGTGCTGTTAGAAGGGC 58 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002943,ENSRNOT00000002946 1 2 2 89 14 6931924 6932095 CAGCACAGAATGAGTTGCA 59 6931853 6931871 GTACCTGCCTTCCTAGCTC 59 NA Rattus norvegicus 81 Itln1 ENSRNOG00000004678 ENSRNOT00000006196 3 1 1 80 13 89923041 89923628 TCTACCAGAAGTACCCGGT 59 89923670 89923690 AGTCATAGACCACAGGTAACG 59 NA Rattus norvegicus 81 Hexa ENSRNOG00000010252 ENSRNOT00000013747 2 1 1 80 8 64341284 64341305 ACCCTAACCATTAATGATGACC 58 64341345 64342695 ACTGAAAGTCTCCAGACCTC 59 NA Rattus norvegicus 81 Atp4a ENSRNOG00000020985 ENSRNOT00000028508 1 1 1 80 1 89163652 89165132 GATGACAATTTGTACCTGGC 57 89165174 89165193 CTTGAACTCCTGGTAGTAGC 58 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 3 2 2 81 17 9737248 9739464 CCCTCTGTGGTTCTCACTG 60 9739508 9739527 GGATGCATTTGTGGTACAGG 59 NA Rattus norvegicus 81 LOC100909911 ENSRNOG00000029341 ENSRNOT00000042264 1 1 1 60 12 40686020 40686038 GTGAAGGTTCCAAGACGTG 59 40685978 40685997 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lage3 ENSRNOG00000053456 ENSRNOT00000078304 1 1 1 80 X 156355663 156355999 CATAAATTCGCCCTCTTCGT 59 156356042 156356060 TTCGACATCAGGAGCTAGG 59 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047425 ENSRNOT00000071019 2 1 1 60 8 41394920 41394941 TCTGAGTTCATTCTTATGGGAC 58 41394962 41394980 GGACAAACAAGGGACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgrp1 ENSRNOG00000005404 ENSRNOT00000007687 2 1 1 80 3 108988778 108989419 CTATCGCTGTAAAGACTGTGG 59 108988718 108988737 TTGGATCGTTTCTTGCACTC 59 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 2 2 3 99 5 25579999 25583504 AGACGAATTGGAATCCCGG 60 25579918 25579936 CACAGTTACGGACGAGAGG 60 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355,ENSRNOT00000085462 2 2 2 81 16 19047169 19047187 AACATGGTGGCAGTATTGG 58 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587,ENSRNOT00000036781,ENSRNOT00000071919 3 3 3 80 15 39718185 39718204 AGCTCAGTAAGGAGAGTCTG 58 39715727 39718144 GGTAGCAACTGTGATTAAGGA 58 NA Rattus norvegicus 81 Ephb6 ENSRNOG00000014367 ENSRNOT00000019720 3 1 1 80 4 70917315 70917333 GCTTTGGCATACTCATGTG 57 70917375 70917624 CATTTAGTACCTCCTGGTCAC 58 NA Rattus norvegicus 81 Fpr2 ENSRNOG00000031331 ENSRNOT00000041605 2 1 1 60 1 116153008 116153028 CCCTTGTTAATTCTAGCCGTG 59 116152968 116152989 ATAAAGAAGGAAGCCACAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r80 ENSRNOG00000046199 ENSRNOT00000074905 2 1 1 60 4 88026436 88026456 TGTCATTCAGTAGTAGGTGGA 58 88026477 88026496 TGGTTCTCACTTACATTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcsk5 ENSRNOG00000012036 ENSRNOT00000016164 3 1 1 80 1 236229560 236254282 GAAGCCAATCCGTTTCTGAC 60 236254324 236254343 ATTAGCGTTCAAATGTCCCG 59 NA Rattus norvegicus 81 Cnfn ENSRNOG00000020530 ENSRNOT00000027845 3 1 1 115 1 82234887 82235354 TGAAAGGCAAAGCCATGTC 59 82234790 82234809 CATATCGTTGCAACAGTCGG 60 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 2 2 2 80 3 110483715 110484300 GCTACTGAGGTGGATATCTGG 60 110484342 110484360 GGAGTCGCTGAAGTAAGGG 60 NA Rattus norvegicus 81 Rn60_6_0926.1 ENSRNOG00000051305 ENSRNOT00000075407 2 1 1 60 6 82982598 82982616 GCCACCAGTCGAATTTACC 59 82982640 82982658 AGTTGTGGTCTAGTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atoh1 ENSRNOG00000006383 ENSRNOT00000008358 1 1 1 60 4 95498760 95498778 AACGACAAGAAGCTGTCCA 60 95498802 95498820 GGGCGTTGATGTAGATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf2 ENSRNOG00000014205 ENSRNOT00000019052 2 1 1 93 16 19223886 19223904 CTTGCAGCTACACCAACTG 59 19223244 19223832 CAATGATAAGGCTTCTCACCTG 59 NA Rattus norvegicus 81 Lynx1 ENSRNOG00000006086 ENSRNOT00000076708 2 1 1 83 7 115986646 115986665 CCTACAATGGAGACAACTGC 59 115986468 115986601 GGGTGAAGTAAGTTCGAGTG 58 NA Rattus norvegicus 81 Dnajb13 ENSRNOG00000017975 ENSRNOT00000024256 3 1 1 80 1 165521210 165521229 CGAGACCTCTATTTGTCCCT 59 165520104 165521167 TTCATTTAGCACCCTTCGG 58 NA Rattus norvegicus 81 Mrps12 ENSRNOG00000019949 ENSRNOT00000027029 1 1 1 235 1 86923321 86923560 TACGACCCTGCTAGTTTGG 59 86921148 86921166 TAAATGTGCGCAACACCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clstn3 ENSRNOG00000011156 ENSRNOT00000015570 2 1 1 80 4 157065123 157065141 CGACAATGGTCTCATCCAC 58 157064506 157065082 TCTTTGTTCTTCTCTTCAGACC 58 NA Rattus norvegicus 81 Mir362 ENSRNOG00000036268 ENSRNOT00000054391 3 1 1 60 X 16117172 16117190 CGAATCCTTGGAACCTAGG 57 16117213 16117232 TGAATCCTTGAACAGGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dydc1 ENSRNOG00000011165 ENSRNOT00000014862 3 1 1 82 16 18653762 18654221 AGCATGGAGCAATTGAGAC 58 18654267 18654285 TCCATCATTTCCTGCTCCA 59 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 1 2 2 80 13 27909755 27910720 TCTGATCTCACTGTGGTGG 59 27910763 27910782 ACTTTCTGTCAGGGTTTCTG 58 NA Rattus norvegicus 81 Gnpda1 ENSRNOG00000047213 ENSRNOT00000071560 1 1 1 80 18 31483495 31483513 GATGGTGATCTTGCCAAGG 59 31481917 31483454 GATCATCACCTCTTTAGCATCC 59 NA Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 3 1 1 61 1 247473676 247476487 AAGATTCACAAACCCAGGC 58 247473633 247473652 GTGACTGAGATTCCCAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 3 3 3 80 X 37866444 37893099 ACTCTCATCAATAAGGACTGC 58 37866384 37866403 GTTGTCAGGAAACACTCCTC 59 NA Rattus norvegicus 81 Prl8a9 ENSRNOG00000024843 ENSRNOT00000034490 2 1 1 80 17 39241183 39242524 AGTCAAGCTCAGTTCTCAGG 60 39242564 39242585 AGGAATGGATGAAACTTTCTCC 59 NA Rattus norvegicus 81 Spata24 ENSRNOG00000019976 ENSRNOT00000040091 1 1 1 80 18 28452817 28452835 TCCAGTGTCAAGAGCAGAG 59 28446941 28452776 GTGGGATTCAATTTCATTGCAC 59 NA Rattus norvegicus 81 AABR07017789.1 ENSRNOG00000049030 ENSRNOT00000075456 1 1 1 72 15 31097319 31097337 TACTCCTAGGCCTTCACCT 59 31097508 31097526 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Ilk ENSRNOG00000018993 ENSRNOT00000025906 1 1 1 80 1 170582812 170582831 ATGCAGTGAATGAACATGGG 59 170582874 170583050 CTACTAGGTCCTCTGCCAC 59 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 2 2 2 82 11 57492805 57493285 GACCACAGATACTGGTTGGA 59 57493330 57493348 AGCTATGACCTTCTCTGGC 59 NA Rattus norvegicus 81 Pde9a ENSRNOG00000001174 ENSRNOT00000001559 1 1 1 80 20 10194591 10194609 CCAGAAACCATTGAAGCCC 59 10194651 10199202 CTCTAAACAGCTCAGCATCTC 59 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 2 2 2 83 1 100395181 100395200 GCTGATACCAATGACAGGTG 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 2 2 2 80 17 16257052 16257461 TTGGAAGCATTCAAAGGTTCTC 60 16257499 16257520 ACCATTGAGAATCTTAGCTCCT 59 NA Rattus norvegicus 81 Vom1r30 ENSRNOG00000057219 ENSRNOT00000086294 1 1 1 60 1 63333411 63333432 AGACCGAATTGTCAAACATCTG 59 63333450 63333471 GATTCCTTTGCAGATAACAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 2 6 7 103 1 215610835 215610853 GAACTCTGCAAACAACTGC 58 215610920 215611166 TTCATGTCTTCCAGCTCCT 58 NA Rattus norvegicus 81 Sms ENSRNOG00000007688 ENSRNOT00000010135 3 1 1 82 X 40385240 40387934 ACAAGAATGGCAGCTTTGC 60 40387978 40387998 CACATCACTGTCGTAACTCTG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 2 3 3 80 10 4343289 4343309 ATTCTTCCAGGATTCATCCTC 57 4343348 4344841 TATAATCACTATCTGGGCATCG 57 NA Rattus norvegicus 81 Mid1ip1 ENSRNOG00000003228 ENSRNOT00000004305 2 1 1 96 X 13116254 13116552 CAGTGCAAGAGATCAAGGC 59 13116176 13116194 TTCTGTCTCAGTTCAGCCC 59 NA InUTR Rattus norvegicus 81 RGD1305089 ENSRNOG00000007043 ENSRNOT00000009304 1 1 1 80 6 76165508 76168475 TGCTGATAACATCTCGGAGG 59 76168515 76168536 TTGGTGATAAACTTGCAGTGAC 60 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 1 2 2 80 1 143374932 143378415 GGGTAACTGAATCTGTTGTAGG 59 143374873 143374891 CGTAGATCGTGTAGCTGTG 58 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 3 2 2 80 1 143379383 143381539 AGGACCAAGCAGAGTTCAC 60 143379321 143379341 ACTCATACTGGGTATTTGGCT 59 NA Rattus norvegicus 81 Gins1 ENSRNOG00000008091 ENSRNOT00000010955 3 1 1 80 3 146701287 146702593 CACGATAGCATACCTGTATGAC 59 146702632 146702652 AAAGGATTTGGCAAGACACTC 59 NA Rattus norvegicus 81 Cage1 ENSRNOG00000024111 ENSRNOT00000038349 1 1 1 80 17 27479897 27483994 GAGCTTGATTTCTTGATCACCA 59 27484035 27484053 ATTCTCCTCGATGAGCCTG 59 NA Rattus norvegicus 81 Arl6 ENSRNOG00000001689 ENSRNOT00000002293 3 1 1 80 11 42875532 42875552 AGTGACTTCTGTGAAAGTGTC 58 42875592 42878987 GCATCACTAGCACAAATATGC 58 NA Rattus norvegicus 81 Ms4a12 ENSRNOG00000026387 ENSRNOT00000036564 3 1 1 81 1 227406714 227408635 TCTGACTGTCTGGTGAAGAG 59 227406652 227406671 ACAGAAACAGAACCACTCCA 59 NA Rattus norvegicus 81 Sval1 ENSRNOG00000025519 ENSRNOT00000021832 2 1 1 95 4 71376565 71376584 TTCAAATTCTCTACCAGCCC 58 71376637 71377716 GTAGAGTGTTCCTATTATCCTGAC 58 NA Rattus norvegicus 81 Olr36 ENSRNOG00000018078 ENSRNOT00000086011 3 1 1 64 1 164717410 164717428 TATGTGGCTATCTGCTGCC 60 164755521 164755539 AGTGCAGTGTTTGTCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1530 ENSRNOG00000050245 ENSRNOT00000071470 3 1 1 60 11 43161796 43161816 CAAATCAGTACCTCTGTGACC 59 43161836 43161856 ACAGAACAGCAAATAGGACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp2 ENSRNOG00000016695 ENSRNOT00000022679 3 1 1 81 19 15563875 15564087 AGGAGAAGGACAAGTGGTC 59 15563812 15563832 CCGACCATTAAACAAGAAGGG 59 NA Rattus norvegicus 81 Gzmn ENSRNOG00000029860 ENSRNOT00000050660 3 1 1 81 15 35151741 35151976 GCTATTAAAGTTGGAGAGTAAGGC 60 35151683 35151701 ATTTACGTGGTCTTTGCGC 60 NA Rattus norvegicus 81 Rnf169 ENSRNOG00000026408 ENSRNOT00000029629 1 1 1 80 1 164947110 164977178 GGAGCCAGAGTTTATATTCCGA 60 164947051 164947072 TTTCTCAGGCATCCATATTCCT 59 NA Rattus norvegicus 81 Tapbpl ENSRNOG00000027552 ENSRNOT00000038178 3 1 1 81 4 157736223 157737663 CCAAACACAGAGCAAAGAGG 60 157736161 157736179 GAAGTCCCAGGAGCAAGAG 60 NA Rattus norvegicus 81 Esf1 ENSRNOG00000004777 ENSRNOT00000034487 3 1 1 80 3 133229665 133229683 CCAGTACCTCTGCAATGGT 59 133226216 133229622 TTGCCATTATGACTGCTTGC 60 NA Rattus norvegicus 81 Olr806 ENSRNOG00000055368 ENSRNOT00000078533 2 1 1 60 4 72222194 72222217 CCTATCCTACATCCAGATCATCTC 60 72222234 72222254 CTTTCTTCCCTCTTTGGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 2 2 2 80 3 6013942 6013961 AGACACTCTGGAAACATCAG 57 6013122 6013902 TATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Spryd7 ENSRNOG00000015095 ENSRNOT00000020419 1 1 1 80 15 41880686 41880706 CTGTACCACAACAACGAAGAG 59 41875670 41880650 ATATGTTATACCCACTACATCTCCC 60 NA Rattus norvegicus 81 Amer3 ENSRNOG00000023603 ENSRNOT00000033700 1 1 1 60 9 41098455 41098477 GGAACATCAGCAGATATGAAAGG 60 41098497 41098515 GCACATCCTTACCCATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 1 2 2 80 8 21951995 21952013 GAGTCTGTGGAGAAACCTG 58 21950498 21951952 CCTGTCATCTTCCTGTTCAC 58 NA Rattus norvegicus 81 Knop1 ENSRNOG00000048270 ENSRNOT00000075020 2 1 1 83 1 188373473 188373492 GAAATTCGAAGCTGACTTCC 57 188371247 188373430 TGACCATTACTGGTCTATTAGC 58 NA Rattus norvegicus 81 RGD1560695 ENSRNOG00000028519 ENSRNOT00000029394 3 1 1 60 1 18354407 18354492 GAAAGGATGATGACTCAGAAGTG 59 18354509 18354530 CACGCTTCGATCTCTAAATCTC 59 NA DesignRelaxed Rattus norvegicus 81 LOC100363943 ENSRNOG00000033056 ENSRNOT00000050658 2 1 1 81 7 15821385 15821577 CCTTCGCAAACATGAACGA 59 15821322 15821340 GCTGGAATAGGTGAAGGCT 60 NA Rattus norvegicus 81 Bnc1 ENSRNOG00000019770 ENSRNOT00000067423 3 1 1 80 1 143803898 143804882 GGCTCATGCTCTAAGTAAGC 59 143803837 143803856 AACACTACATTGGACTGGAC 58 NA Rattus norvegicus 81 Gss ENSRNOG00000018964 ENSRNOT00000025657 3 1 1 80 3 151086301 151086320 ACTGATTGCTCAGGAGAAGG 60 151086150 151086260 ACATGGATCTTCCTGTCTAGC 59 NA Rattus norvegicus 81 Olr1431 ENSRNOG00000031194 ENSRNOT00000046817 3 1 1 60 10 44228931 44228950 TGTTGTCACATTAGTGGCTC 58 44228971 44228991 ACAGAGGAAGAAATACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911939 ENSRNOG00000048942 ENSRNOT00000043810 2 1 1 60 8 42285332 42285352 ATCAGTTCATCTAAGGGCAGG 60 42285373 42285392 CAACAATGATGTGGGAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbnl ENSRNOG00000012378 ENSRNOT00000017375 3 1 1 80 14 86036542 86039078 CCAACTTCCTAAAGGGTGC 59 86039122 86039140 CCTTCTCCATGATGCACTC 58 NA Rattus norvegicus 81 AABR07073531.1 ENSRNOG00000038397 ENSRNOT00000058474 2 1 1 81 X 45596476 45596880 ATGGTAACTTCCAGGCCTG 59 45596413 45596432 CGGATGATGTCATCCTTGTC 59 NA Rattus norvegicus 81 Wdr5 ENSRNOG00000008212 ENSRNOT00000011556 3 1 1 80 3 6068073 6068092 TATGGGATGTGAAGACAGGG 59 6068134 6071528 CACGATTGAAATGAACGGCT 60 NA Rattus norvegicus 81 Nkx3-1 ENSRNOG00000015477 ENSRNOT00000020753 2 1 1 83 15 51065540 51065558 GTAGCAGTGTGACTCTGGA 59 51065605 51066434 AATGTGCATCTGACTCGGT 59 NA Rattus norvegicus 81 Ppl ENSRNOG00000002930 ENSRNOT00000004026 2 1 1 80 10 10685211 10686629 CTTGAGACAGCAACCAGAG 58 10686673 10686691 CATGTTTCCTCCATGCCAG 59 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672,ENSRNOT00000079864 2 2 2 80 6 1675082 1681739 TTCCTTGAAGGATGTCTCCG 60 1681782 1681800 TGAAGAAAGGCCTCTTCCC 59 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144,ENSRNOT00000077185 3 2 2 81 10 39453967 39457605 ATTGCTAAGCCCAAACTCG 59 39457649 39457668 TGGAAACTCTGTAGCTAGCA 59 NA Rattus norvegicus 81 Fam46d ENSRNOG00000023637 ENSRNOT00000031200 2 1 1 60 X 78992044 78992064 GAAAGCCTGAAGAGATCAGAG 58 78992085 78992104 TCACGAACCAACAAATTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909783 ENSRNOG00000050781 ENSRNOT00000071380 2 1 1 69 3 9403931 9403949 ACATCGGAGCCAGAATGAG 60 9403982 9404000 CGTGGACTTTGAACTGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam19 ENSRNOG00000042980 ENSRNOT00000008184 3 1 1 80 10 31231647 31231666 TCTCAGAATGGTGGAACTGG 60 31231709 31231972 GGTGTTAGTCACCTTTCGC 59 NA Rattus norvegicus 81 Gpr108 ENSRNOG00000046128 ENSRNOT00000075403 3 1 1 80 9 9710079 9710189 TCCTACAACTTCAGTTTCCAC 58 9710229 9710249 GTAACAGTTGTGGAAGTTGAG 57 NA Rattus norvegicus 81 Ccnt1 ENSRNOG00000053054 ENSRNOT00000088999 3 1 1 80 7 140236990 140237008 ACATGTCATCAAGGTGGCA 60 140229591 140236946 TGTTGTAGGTAGGCCTCAC 59 NA Rattus norvegicus 81 Ppap2a ENSRNOG00000009980 ENSRNOT00000066098 3 1 1 85 2 44697579 44697597 ACCATGACAGTACCGTCAC 59 44697640 44716584 CAGAGTTTCTCCAGTAATCATAGAG 59 NA Rattus norvegicus 81 Ccr4 ENSRNOG00000010315 ENSRNOT00000013705 3 1 1 60 8 122531729 122531747 TTGGTCTTTCTGTTGGGTC 58 122531687 122531705 TGTACTTGAACAGCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 3 2 2 80 1 73659764 73659924 AGTGACAGGACTCTATAGTAAACC 59 73659707 73659725 TGAAGTGTCACAGTCTCCC 59 NA Rattus norvegicus 81 Plcxd3 ENSRNOG00000014550 ENSRNOT00000019524 2 1 1 80 2 54302513 54359939 AATCACAGAAAGAGCTCTCC 57 54359982 54360000 GTGACAATATTGATGCCGC 58 NA Rattus norvegicus 81 Six6os1 ENSRNOG00000031655 ENSRNOT00000041409 1 1 1 81 6 95783170 95783189 AAATTCAGCCAATCAGTCCA 58 95777910 95783129 ACCGGAGTCATTAAATATCTGC 58 NA Rattus norvegicus 81 Six6os1 ENSRNOG00000031655 ENSRNOT00000041409 3 1 1 86 6 95793124 95795052 AGCTGTAGTAACTGGAAGCC 60 95793057 95793081 GGTTTCTTGGTAAGTAGTAAGTTGG 60 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 1 2 2 113 1 87046663 87047024 GCTTCAAGACTGTGATCGG 59 87047101 87047119 TCTTCACAGAATGCAGCTG 58 NA Rattus norvegicus 81 Dab2 ENSRNOG00000028930 ENSRNOT00000050655 1 1 1 80 2 55748510 55749833 ATGATGAAACTCAAGGGAATGG 59 55749874 55749892 CAGGGAAATGTTGACCCAG 59 NA Rattus norvegicus 81 LOC680519 ENSRNOG00000038322 ENSRNOT00000058354 3 1 1 89 6 103934470 103934489 TTGGTGGCGATAATCAACTC 58 103934398 103934418 GTTCCTTCGGTATCCTCGA 59 NA Rattus norvegicus 81 Slc30a3 ENSRNOG00000006204 ENSRNOT00000008126 2 1 1 80 6 26648346 26649298 CACCTGGCTATTGACTCCA 59 26649340 26649360 GAATCCAAACCGGGAATAGAG 59 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 1 3 3 80 15 45505722 45505740 GATCCAGAACCTGAATGCC 58 45503369 45505680 GGAGTACATACTTCCTTCCCA 59 NA Rattus norvegicus 81 LOC100909409 ENSRNOG00000046751 ENSRNOT00000042150 3 1 1 80 19 27840024 27840672 AACTTCTATCGCAACCTGC 58 27840716 27840734 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Hpcal4 ENSRNOG00000050983 ENSRNOT00000074347 1 1 1 80 5 140876278 140876296 GCCTTTGAGATGTACGACC 58 140876334 140878317 CTTATAGATAGCCTCAATGATCTCC 58 NA Rattus norvegicus 81 Mxi1 ENSRNOG00000034078 ENSRNOT00000042822 2 1 1 80 1 274087209 274087227 ATGGAGCGGATACGAATGG 60 274087270 274088377 CACTTCAATCTCCTCTCGCT 60 NA Rattus norvegicus 81 Sema3a ENSRNOG00000023337 ENSRNOT00000034692 1 1 1 80 4 18249244 18249264 TGCTATCTTCAGAACATTGGG 58 18219678 18249204 AATCTAGGATCATTGAGCCAC 58 NA Rattus norvegicus 81 Sema3a ENSRNOG00000023337 ENSRNOT00000034692 3 1 1 80 4 18179305 18180703 AAGATCGAAAGGAGGAGATCAG 60 18179246 18179265 TCTTCTGCAGACTACGAAGC 60 NA Rattus norvegicus 81 Ccdc47 ENSRNOG00000009006 ENSRNOT00000012533 3 1 1 80 10 94398988 94399007 AGCACATCTATAACCTGTGG 57 94398727 94398946 CTTGTCTCTTCAGGAACCTC 58 NA Rattus norvegicus 81 Rn60_20_0014.2 ENSRNOG00000061377 ENSRNOT00000085148 2 1 1 60 20 1334890 1334911 AGAAGTTGCCAGTAGTTATCAG 58 1334851 1334873 CATACACCCATGAGTGAATAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC127013.1 ENSRNOG00000059373 ENSRNOT00000088728 3 1 1 82 4 155091434 155091453 TTTGAGATGGATAGCAGCCT 59 155091495 155092246 GATGCAAATATGACAAGGAGGA 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000016093 3 1 2 117 5 154902098 154903606 CATCAAACGTGGAGGAAGG 59 154903687 154903705 CAAACTCGCTCAGACTCTG 58 NA Rattus norvegicus 81 Slc25a10 ENSRNOG00000036693 ENSRNOT00000054963 3 1 1 80 10 109668898 109668917 GACTACATGACCAAGGACAG 58 109668959 109669063 TCCAGTTAAACCACTGATGC 58 NA Rattus norvegicus 81 C1qtnf3 ENSRNOG00000018570 ENSRNOT00000025170 1 1 1 80 2 60926867 60926886 GAGATTATGGATTCCGTGGT 57 60926927 60929410 CATTGTTTCCATGGTTTCCTG 58 NA Rattus norvegicus 81 Prl ENSRNOG00000017374 ENSRNOT00000023412 2 1 1 83 17 39814558 39817623 AATTAGCCAGGCCTATCCTG 59 39814494 39814512 TCATCAACTCCTTGCAGGG 60 NA Rattus norvegicus 81 LOC680528 ENSRNOG00000039678 ENSRNOT00000060861 2 1 1 80 11 44090885 44090903 TCTATGCCCAAAGTGTCCT 58 44090943 44091996 CTATTTCAGGCCTCTGAATATCC 59 NA Rattus norvegicus 81 Fhl2 ENSRNOG00000016866 ENSRNOT00000023014 2 1 1 106 9 49949993 49950011 CTAAAGGAGGAGAACCCGC 60 49938453 49949924 TAGGACAAGTCCTTGCAGTC 60 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000049868 ENSRNOT00000032394 2 1 1 82 1 88169594 88169835 GCTTGTCACAGCATACCTC 59 88169530 88169548 CATGGAGGTCAGAAACACG 59 NA Rattus norvegicus 81 Cstf3 ENSRNOG00000012089 ENSRNOT00000016318 3 1 1 80 3 94603142 94605765 ACTGGGCTACAAGGATGTC 59 94605809 94605827 ACAGGCACTATGGAAGGAG 59 NA Rattus norvegicus 81 LOC288913 ENSRNOG00000049931 ENSRNOT00000072494 2 1 1 87 19 25356317 25358371 AAAGTTGAAGAAGAGCCTGGA 60 25356250 25356268 CTTCTTAGGCAGGCTGGAG 60 NA Rattus norvegicus 81 Rn60_20_0009.6 ENSRNOG00000051451 ENSRNOT00000089078 1 1 1 60 20 1622846 1622866 TAGATCCAAGACTCCACTCAC 59 1622806 1622829 ATATCTAGACATGCTAGGTTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909919 ENSRNOG00000031054 ENSRNOT00000048537 2 1 1 60 8 42664201 42664219 CCAGCACTTACAACAACGA 58 42664241 42664261 GACACGACAATATTCATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Loxl4 ENSRNOG00000015727 ENSRNOT00000021144 3 1 1 88 1 261843193 261844033 TTGCTATCAAGGACACCTGG 60 261843124 261843142 CATTTCTGTGCCTGAGCAG 59 NA Rattus norvegicus 81 Erlin1 ENSRNOG00000012911 ENSRNOT00000017268 3 1 1 81 1 263823136 263824696 TTGAGTTAATGGAGGCAGAG 57 263823074 263823093 TCTGTCTCAGCTTCTTTCTC 57 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000045833 1 1 2 81 15 45747481 45777987 AAGATCCTTCTGCAGGCTC 60 45778031 45778050 GAGGCTTCTTCTCAGAGGAG 59 NA Rattus norvegicus 81 LOC100910256 ENSRNOG00000050950 ENSRNOT00000072279 2 1 1 60 8 42871610 42871628 CACGATCATCCTGATCCTG 58 42871568 42871587 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp5c ENSRNOG00000016907 ENSRNOT00000023078 3 1 1 80 1 78946672 78946690 TGTATGAGCTCTTCAGCGA 59 78946441 78946628 CTCCATGCATGATCAGCAC 59 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 3 2 2 81 19 19689636 19689654 GAGCATGAGCAGATTGAGC 59 19689696 19690385 CAAATTCACACTGACAGTTTGC 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054,ENSRNOT00000036050 1 2 2 80 5 33594944 33594964 GGGATTATGAAGGCATCAAGG 59 33595003 33597790 GGTTCAGTTCAATTGCTTTCTC 59 NA Rattus norvegicus 81 Sh3gl2 ENSRNOG00000006761 ENSRNOT00000008999 1 1 1 80 5 103615248 103615266 AAGTGAGTGAGAAGGTGGG 59 103615308 103623352 TAACATCCACTTTCCTCTCCA 59 NA Rattus norvegicus 81 Pigs ENSRNOG00000011366 ENSRNOT00000015207 1 1 1 80 10 65602887 65602907 TACATTCAGGACAAGGATGGA 59 65602946 65603448 ATTGTATACCATAATGCCACCC 58 NA Rattus norvegicus 81 Lime1 ENSRNOG00000049336 ENSRNOT00000019545 3 1 1 81 3 176883841 176883859 GAAGCACAAAGGGACAGAG 59 176883901 176884018 TAAGACATCCATCTGAGTAGCT 58 NA Rattus norvegicus 81 March8 ENSRNOG00000012297 ENSRNOT00000017294 2 1 1 80 4 148392579 148394238 AAACCTTTGAGGAAATGGGAG 59 148394280 148394298 GACATGGAACGTCACTGAG 58 NA Rattus norvegicus 81 Nab1 ENSRNOG00000012959 ENSRNOT00000017813 3 1 1 80 9 53934987 53935005 CAGGAATCTGTGCCAACAC 59 53935049 53936903 CTTCTCAGCCTGTGAACTG 58 NA Rattus norvegicus 81 Mul1 ENSRNOG00000016010 ENSRNOT00000021833 1 1 1 91 5 156859650 156859668 TTTGTGGAGAACTGCAAGG 58 156859723 156860703 TAGTCATTCCACAGGTGGG 59 NA Rattus norvegicus 81 Vps54 ENSRNOG00000007125 ENSRNOT00000010264 1 1 1 80 14 106153663 106153681 GGTAGATCCGACAAAGCAC 58 106153724 106154852 TGTTGATCTGTAACTGTGGG 58 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000075999,ENSRNOT00000007958 2 2 2 82 7 115968007 115968025 GACTGCGTCAAGATCACAC 59 115967551 115967963 AAAGGAAACACTATCTCCCGG 60 NA Rattus norvegicus 81 Umodl1 ENSRNOG00000001157 ENSRNOT00000050744 2 1 1 80 20 9687351 9687369 GAACACATCGATGCTGGAG 59 9687413 9688567 CACCCATCACTGCATTGAG 59 NA Rattus norvegicus 81 Telo2 ENSRNOG00000016774 ENSRNOT00000022670 3 1 1 80 10 14466298 14466316 GCCAAGTATCTGACCTCAC 58 14465461 14466254 AAGAACGAGAACATCCAGG 57 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 3 2 2 80 1 88042952 88043646 AACTACGTCACCAGCATCC 60 88042890 88042908 CTCGAAGTACCACTTGCCA 60 NA Rattus norvegicus 81 Dus3l ENSRNOG00000050381 ENSRNOT00000072703 3 1 1 80 9 10289748 10289860 TTTCTTTGCAGGTATGTGCC 59 10289687 10289705 GCCTAAGTAGTAGGGTGGC 59 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000024825 2 2 3 80 18 29458368 29458387 TAGAGGCACAATCTGAACGA 59 29458430 29459840 GCAAATCTACCACCTCCTG 58 NA Rattus norvegicus 81 Olfr94-ps1 ENSRNOG00000000767 ENSRNOT00000000994 3 1 1 60 20 1875201 1875219 TTCTACACGGTGGTGACAC 60 1875242 1875261 CTTCCTTGTTCCTCAGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir592 ENSRNOG00000036461 ENSRNOT00000054571 3 1 1 60 4 55182414 55182432 ATGATGTGTTGTGATGGCA 58 55182372 55182393 ATGTCTTACGTCATGATGTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp853 ENSRNOG00000030579 ENSRNOT00000074138 1 1 1 144 12 13324042 13324060 TTCCTCTTAGCACAGCCTG 59 13324168 13326676 CACCACTGCTACCTGAGAG 60 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064,ENSRNOT00000087121 1 3 3 89 10 56715632 56715906 TTCATCCCAAAGCATGCAG 59 56715959 56715977 TTGAACTCCATCAGGGTGG 59 NA Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 2 2 2 80 3 7053732 7053750 GGCAGAATGGAAGGAAGGT 60 7053794 7054270 TCCTGCTCTGGAAATCGTC 60 NA Rattus norvegicus 81 Cox14 ENSRNOG00000061425 ENSRNOT00000091207 2 1 1 60 7 141380422 141380440 CCTACCATTACCTCCAGCT 58 141380464 141380482 GAGGTCTTCTGCTCTTCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cflar ENSRNOG00000012473 ENSRNOT00000016730 2 1 1 84 9 65569240 65580851 TGACACAGAATATCTTCGAGAG 58 65580894 65580914 GGTTATTTCATGTGAACTGGG 57 NA Rattus norvegicus 81 Ermp1 ENSRNOG00000010915 ENSRNOT00000021958 1 1 1 80 1 247790370 247792737 CCTTTGAAGCAACAGGACC 59 247790308 247790327 CAAGAGACCACTGAGAAAGC 59 NA Rattus norvegicus 81 Ermp1 ENSRNOG00000010915 ENSRNOT00000021958 2 1 1 80 1 247808202 247808222 ATGGGTACATCTATCACACCA 58 247805896 247808161 AAATGTTGTCACCTGCTCTC 59 NA Rattus norvegicus 81 Rad50 ENSRNOG00000033065 ENSRNOT00000063772 1 1 1 80 10 39046414 39046432 TAAGGAAGCCCAGTTAGCA 58 39043624 39046371 TTCAGGCGATTCTTCAATGG 59 NA Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378 2 1 2 80 6 73385827 73385847 TACAGCTGAGAAGCCTATACC 59 73385886 73396578 AGTCCTTCGGTACATAATCCTG 60 NA Rattus norvegicus 81 Olr1142 ENSRNOG00000045713 ENSRNOT00000050754 1 1 1 60 8 19274523 19274542 GCAGCCTTTCATCTTTACCC 59 19274565 19274583 CAGGTTTCCTATGGTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epcam ENSRNOG00000015667 ENSRNOT00000021135 2 1 1 80 6 11284251 11288035 GTTGTCCTGGTTATATCTACAAGG 59 11282654 11282674 TCTGTGTATCTCACCCATCTC 59 NA Rattus norvegicus 81 Olr1151 ENSRNOG00000055639 ENSRNOT00000079046 1 1 1 60 8 19671877 19671896 ACTGTGATTCCTCCAATGCT 59 19671836 19671857 TCTTCATATCTTTGCTCCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gap43 ENSRNOG00000001528 ENSRNOT00000002091 3 1 1 138 11 58672793 58672811 CCTAAACAAGCCGATGTGC 60 58672911 58717253 CTACAGCTTCTTTCTCCTCCT 59 NA Rattus norvegicus 81 Olr766 ENSRNOG00000050138 ENSRNOT00000043664 1 1 1 60 3 102741175 102741194 ACCTGCTTTATTCTGTTGCT 58 102741134 102741156 AGCTCTGACATACAGTGATAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra1a ENSRNOG00000009522 ENSRNOT00000012736 2 1 1 90 15 43300268 43391905 TAGTGATGCCCATTGGGTC 60 43391956 43391977 CAACTATTTAGATACCCGAGCC 59 NA Rattus norvegicus 81 Fam170a ENSRNOG00000015834 ENSRNOT00000039379 1 1 1 88 18 45026130 45026926 ATCGTAGTAAGGGAACCCG 59 45026978 45026996 AATAGTGGCCTCTCCTTCC 59 NA Rattus norvegicus 81 Eef1e1 ENSRNOG00000016390 ENSRNOT00000022065 3 1 1 80 17 26785058 26785076 GCTTCTGGAGAAGAGTCTG 57 26785119 26787508 GTTTGTAGGACTGGAACCTG 58 NA Rattus norvegicus 81 Olr1735 ENSRNOG00000050043 ENSRNOT00000048856 3 1 1 60 20 1750473 1750496 CTGTTCTCTTTAACTACATCCGTC 59 1750515 1750533 ATGATTCGCTCCTGATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpysl4 ENSRNOG00000027582 ENSRNOT00000029587 3 1 1 80 1 211434744 211434762 GACCTGGTCATCTGGAACC 60 211434800 211435327 GAAGATGTTGTACTCTACATTCAGG 59 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 2 2 2 80 10 29034801 29034822 CAGAGAAACAGAAGCAATTCAG 58 29034857 29035380 GGTACTTGGTAGTTATAGAGTTCTC 58 NA Rattus norvegicus 81 Tnni3 ENSRNOG00000018250 ENSRNOT00000024640 3 1 1 80 1 72884844 72885330 ATCACTGAGATTGCAGATCTG 58 72885372 72885390 TCTCACTCTTCGGAGAGTG 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 1 3 3 80 7 116156935 116157190 GAGACCTTGAGGCTCTACC 59 116156873 116156894 GACATGATAGTTCTGAAGCACC 59 NA Rattus norvegicus 81 Far2 ENSRNOG00000001851 ENSRNOT00000002528 3 1 1 80 4 182529161 182529181 ATTTACATCCTCGTGAGACCC 60 182529221 182540113 CTCGAACAGCTTACTGTTGAG 59 NA Rattus norvegicus 81 Ogfod3 ENSRNOG00000036668 ENSRNOT00000054925 3 1 1 87 10 110386074 110386092 ACTTAGAGGACTTCGGTGG 58 110378891 110386023 AATGAGACTCGACCAGCTC 59 NA Rattus norvegicus 81 Phax ENSRNOG00000014459 ENSRNOT00000019627 1 1 1 80 18 51662408 51664754 GCAAATGGCGAAAGTACTAGG 60 51664793 51664814 GAGTCCACATGTTTAACAGTCC 59 NA Rattus norvegicus 81 Ltk ENSRNOG00000025130 ENSRNOT00000030532 2 1 1 80 3 111556964 111556984 ATAATGATGGGAGCTGTTGTG 59 111556671 111556927 CTTCTGGTTCACTAGAATTAGGAC 59 NA Rattus norvegicus 81 Ltk ENSRNOG00000025130 ENSRNOT00000030532 3 1 1 80 3 111554634 111554654 GGAGGTTCTAGACTTCATTGC 59 111554500 111554593 GTCATGATTCGGTACACTGG 59 NA Rattus norvegicus 81 Scn3b ENSRNOG00000057221 ENSRNOT00000087022 2 1 1 80 8 44137280 44145428 CATCTACTGGGTCAGAGTCTG 59 44145470 44145488 TTCATGGGATTACCCTGCA 59 NA Rattus norvegicus 81 Dapp1 ENSRNOG00000010575 ENSRNOT00000014139 2 1 1 80 2 243182580 243183716 ATTTCAAAGACCAGATGTCTCC 59 243182521 243182541 GCGAGTAATCAAATTGGACAG 58 NA Rattus norvegicus 81 Ccdc182 ENSRNOG00000010446 ENSRNOT00000013882 3 1 1 60 10 75620552 75620570 TACAGGGCAAGAAGATGGT 58 75620593 75620612 GATTGAGACAGGGAAAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt4 ENSRNOG00000003114 ENSRNOT00000004289 2 1 1 83 11 64570071 64570090 TGACTTCAACCTCTACACCT 58 64564924 64570025 CTGTAACGCAACCTGTAGC 59 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770,ENSRNOT00000058834,ENSRNOT00000058833 2 3 3 80 X 36935387 36935406 GCTGTAACTCCACTAACTCC 58 36931876 36935344 TAGATGCATTGCCATTCCC 58 NA Rattus norvegicus 81 Olr231 ENSRNOG00000019600 ENSRNOT00000026511 1 1 1 60 1 171188301 171188322 CAAAGTCCCATGTACTTCTTCC 59 171188341 171188361 CCAAGTTGAAGCCTATTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197,ENSRNOT00000061780 2 2 2 80 5 16989140 16994998 AGAGTTGCTGATCAGGTTAGAG 60 16989081 16989101 CGACTTTCCTGTCACAATACC 59 NA Rattus norvegicus 81 Olr1748 ENSRNOG00000048232 ENSRNOT00000089207 2 1 1 60 20 1905444 1905462 GGGCAAGTTCTTTGGTCTC 59 1905482 1905504 GTATACAAGAGGGTTGAATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp41 ENSRNOG00000007489 ENSRNOT00000009823 3 1 1 60 7 116655437 116655455 ACAAGACAGACCACATTCG 58 116655478 116655497 TCACACTTAAAGGGCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcr6 ENSRNOG00000006319 ENSRNOT00000008294 2 1 1 60 8 132870268 132870287 GGCTTATCTGTCAGTTCCAC 58 132870306 132870328 GTCATCTGTAGAACAAGAACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 2 2 2 80 17 30691843 30691861 ATTGCCTACGCCTCTTCAG 60 30691240 30691802 CTCGCAAATTCATACTGAGAGG 59 NA Rattus norvegicus 81 NMS ENSRNOG00000038979 ENSRNOT00000059587 2 1 1 80 9 45613284 45613930 CTAAGAAGGATCCTACCACCA 58 45614682 45614703 GGACTTTGTCAGTGTATCTTCC 59 NA Rattus norvegicus 81 Grid2ip ENSRNOG00000030927 ENSRNOT00000044378 3 1 1 80 12 13225400 13225420 GGTAACTATCTCAACGATGGA 57 13224601 13225358 GGAGTTTAGCTCTGTCAGG 57 NA Rattus norvegicus 81 Olr490 ENSRNOG00000053834 ENSRNOT00000075227 2 1 1 60 3 73624108 73624128 TCTACGGTGTGATCATGTCTC 59 73624068 73624087 TAGAGGTATGGAATGCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 1 2 6 80 1 262013548 262013567 CGGATGAGGAATTTGAGGAG 58 262012002 262013505 TCAGACAAGCCACAATCTC 58 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634,ENSRNOT00000051480 2 2 4 80 20 2059772 2059912 CTCACACTGAGATGGAAACC 58 2059954 2059973 AATGATGACAAACCCAAGGA 57 NA Rattus norvegicus 81 Cpne5 ENSRNOG00000000522 ENSRNOT00000000629 2 1 1 80 20 6448942 6448962 GTGCAATGGAGACTATGACAG 59 6438009 6440448 TCTCCAATGAAATCATGGCTG 59 NA Rattus norvegicus 81 Foxo6 ENSRNOG00000032639 ENSRNOT00000050941 1 1 1 87 5 139226839 139226858 GATCTACGACTGGATGGTCC 60 139209506 139226789 CCGGATGGAGTTCTTCCAG 60 NA Rattus norvegicus 81 Mir3577 ENSRNOG00000049542 ENSRNOT00000074367 2 1 1 60 10 104340722 104340742 GGAGGTTTGCTTGTTATAGGG 59 104340764 104340782 GAGGGACAGATGATGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssh2 ENSRNOG00000014285 ENSRNOT00000019410 2 1 1 80 10 62751283 62762630 TAAGGCTGGCTGTAAGACTG 60 62751222 62751244 CTTGTCTACCGTTAGTTGAAACC 60 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810,ENSRNOT00000089763 2 2 2 80 8 48720657 48720675 GACTTGCTGTACAGACTGG 58 48720718 48720928 CTGATGTAGGAACTACCCAC 57 NA Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000077111 3 1 2 81 9 49481487 49481506 AACAGACTGAACAGGAAAGC 59 49481550 49481652 GTCTCAAAGGCTCTTTCGC 59 NA InUTR Rattus norvegicus 81 LOC100364596 ENSRNOG00000026697 ENSRNOT00000039568 2 1 1 105 X 62282369 62282550 TAAGAAGGCCCAAAGTGCA 60 62282616 62282637 GTCTTCTTTGTTGGTGGTACAG 60 NA Rattus norvegicus 81 LOC100364596 ENSRNOG00000026697 ENSRNOT00000039568 3 1 1 106 X 62282368 62282549 GTAAGAAGGCCCAAAGTGC 59 62282616 62282637 GTCTTCTTTGTTGGTGGTACAG 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 3 2 2 80 2 118960524 118960542 CGATTCCTGGGTTCTACGA 59 118960584 118963025 AGCTAAAGATCTAGGGACCTG 59 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446 2 1 2 83 14 12988137 12988156 GGGATTGTAGGAATACGAGG 57 12975260 12988091 AAATTTGGCACTTGCATGG 58 NA Rattus norvegicus 81 Pycr2 ENSRNOG00000003267 ENSRNOT00000004379 2 1 1 80 13 99185015 99185035 GTCGGCTCACAAGATAATAGC 59 99185075 99186199 AGATTCACACCCATCTTCCTG 60 NA Rattus norvegicus 81 LOC685520 ENSRNOG00000030351 ENSRNOT00000045504 3 1 1 117 1 243108464 243108482 AGGAAGAAGAGGAAGACGA 57 243108128 243108146 GGAGTGAGTTGTGTACAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC685544 ENSRNOG00000020131 ENSRNOT00000027270 1 1 1 60 1 215460771 215460789 GTCTTCCTGTTGCCAATCC 59 215460812 215460831 CTTACAACAGCTGGACTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 2 2 2 80 5 139047415 139047434 AAAGGCAGAGGAAGGTACTC 59 139047475 139062468 TTTGATTTGTACCCTCCTTCG 58 NA Rattus norvegicus 81 Bola3 ENSRNOG00000021866 ENSRNOT00000031583 2 1 1 99 4 115048643 115050496 CAGACATCTCAGGAGGCTG 60 115050559 115050577 TGATTGACCATCTGGTGCT 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 2 2 2 80 9 10016762 10016880 CCAGGGAGATTCAATTGGT 57 10017817 10017837 GGAACCCTATACTCTTCTGTC 57 NA Rattus norvegicus 81 RGD1566326 ENSRNOG00000045620 ENSRNOT00000051901 1 1 1 60 3 85544914 85544935 TACATGCGAATCTACAAGAAGG 58 85544955 85544974 TTTGAACAGTGCCTATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb1b ENSRNOG00000034229 ENSRNOT00000022681 1 1 1 80 17 32555973 32555992 GCATGGAGCATCTCATACAC 59 32555060 32555930 GCCAAGAACTCAGGAAGGA 59 NA Rattus norvegicus 81 Tmem218 ENSRNOG00000008757 ENSRNOT00000012060 1 1 1 80 8 39698831 39702017 CAAGGTGAAATGAAGATTGTGG 58 39702058 39702076 TCCAAGAAAGACAGCACTG 58 NA Rattus norvegicus 81 Slc36a2 ENSRNOG00000011892 ENSRNOT00000016440 3 1 1 81 10 40508244 40509005 TACATCATCCAGGGAATTCCAG 60 40508184 40508202 CTGTTCCAAAGAAGAGCGG 59 NA Rattus norvegicus 81 Rn60_X_0588.2 ENSRNOG00000051220 ENSRNOT00000076131 3 1 1 125 X 57992124 57992142 TTCCATTACAAGGTGCGGT 60 57992007 57992026 ACCTCTGTCCTCATCTAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Timmdc1 ENSRNOG00000002999 ENSRNOT00000004023 2 1 1 82 11 64791019 64791038 GCGTTCTTATGTCTCAGACC 59 64791083 64795087 TCCGCTGTTCATCTTTGAC 58 NA Rattus norvegicus 81 Vom1r-ps112 ENSRNOG00000050623 ENSRNOT00000059671 1 1 1 60 1 60828172 60828193 ATTTCTTTCTCCTCTACCACTG 58 60828133 60828152 ATAGACCTCAACCTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027372 3 1 10 62 18 30001620 30001638 GCGTCCAGTATCAGAGGTC 60 30001663 30185397 GGTTGAAAGCCATGATGGTC 60 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 S100a6 ENSRNOG00000011647 ENSRNOT00000015612 3 1 1 81 2 190007981 190008290 CTCACCATTGGTGCTAAGC 59 190008332 190008353 TTACTTCCTGATCCTTGTTACG 58 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629,ENSRNOT00000029487,ENSRNOT00000027933 3 4 4 80 1 82340897 82341392 TGGACGTTATCTATGGTCCG 59 82340836 82340854 AGAGGTTGAGGTTTGACCC 59 NA Rattus norvegicus 81 Rn60_X_0598.1 ENSRNOG00000031719 ENSRNOT00000046065 1 1 1 60 X 59149705 59149724 AAATACATTGAACGGCTCCA 58 59149746 59149765 GTGAGCCATCTGATTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e1b ENSRNOG00000025480 ENSRNOT00000037527 2 1 1 81 17 10370731 10371380 CTGTTCAAGGAAGGCATCC 59 10370668 10370686 GTTTGGCAAGACTGAGCAG 60 NA Rattus norvegicus 81 Dmkn ENSRNOG00000055934 ENSRNOT00000084799 2 1 1 81 1 89224117 89224136 TACTCTACTTCCGCAGACTG 59 89224727 89226339 AGATCTGAGCCCTCAATCTG 59 NA Rattus norvegicus 81 Pacs1 ENSRNOG00000020350 ENSRNOT00000027632 1 1 1 80 1 220516658 220518031 AGAGAAGAACAAGAAAGTGCC 59 220516598 220516618 ATGACTTGGCTCTTAGAATCC 58 NA Rattus norvegicus 81 RGD1563349 ENSRNOG00000005818 ENSRNOT00000007723 1 1 1 80 4 21645806 21650347 CTGTAACAACTCTTCTTGGCT 58 21645746 21645764 GCGTAGATCAGAGACACAG 58 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733,ENSRNOT00000071863 1 2 2 80 6 132434920 132439042 AACTTCACAAAGCAGAGATTCC 59 132439081 132439101 CAATCAAGATGACATTGCCCT 59 NA Rattus norvegicus 81 Lcor ENSRNOG00000042679 ENSRNOT00000036791 2 1 1 88 1 260798400 260798418 CAAACTGCTCATGGCTGAC 60 260798469 260801089 CAAGTACACCGTCTTGTTCG 59 NA Rattus norvegicus 81 Manea ENSRNOG00000008626 ENSRNOT00000011576 3 1 1 81 5 40860144 40860163 TTAGGAAGTTACAGCTCCCG 59 40856412 40860100 CCAGTACTCCAATGGAGGC 60 NA Rattus norvegicus 81 LOC683581 ENSRNOG00000049827 ENSRNOT00000075529 2 1 1 60 2 165835880 165835898 CACGGTGTGGGATATTGGA 60 165835922 165835940 CTCACAGTAGCAGTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M5 ENSRNOG00000033136 ENSRNOT00000052311 1 1 1 80 20 2039874 2039894 GGACATTTCCAAGAATTCCCT 58 2039665 2039832 AAGACATGAGTGCCATCCT 59 NA Rattus norvegicus 81 Hsd17b14 ENSRNOG00000020949 ENSRNOT00000028436 2 1 1 81 1 101542372 101543322 AGGAAGGAGATTTACAGACTCTG 59 101543363 101543381 TAGCCGGCATTATTCACCA 59 NA Rattus norvegicus 81 LOC685513 ENSRNOG00000023899 ENSRNOT00000036953 2 1 1 109 19 26181257 26181364 GCATAAAGGTATCCAAGGCA 58 26181167 26181185 TTCCTTGAAAGGGTTGGTG 58 NA Rattus norvegicus 81 Ubr3 ENSRNOG00000008616 ENSRNOT00000011380 2 1 1 80 3 56240147 56240168 GATCTCATAAAGGAAGTGGAGG 58 56240206 56242374 ACTTAGGTTGGTTTCTGAACTG 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 3 2 2 81 20 13761044 13761356 ATTTACTCAAAGGGCAGCA 57 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Rn60_X_0611.1 ENSRNOG00000051144 ENSRNOT00000076698 1 1 1 60 X 60458588 60458607 TCAAGCCAACACAGAAAGGA 60 60458547 60458566 TGCTGTCACCAACATTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex10 ENSRNOG00000008618 ENSRNOT00000011401 3 1 1 80 5 64186118 64187940 CAGTAAGCATTTGGTTGGGT 59 64186057 64186076 TCCAGGAGCTTACACATCAC 60 NA Rattus norvegicus 81 Zc3h3 ENSRNOG00000007684 ENSRNOT00000010120 2 1 1 81 7 116840639 116868081 CAAGGAAGCTTCCAATGCG 60 116840576 116840594 GGTCTTCTTGACAATGCGG 59 NA Rattus norvegicus 81 Vom2r79 ENSRNOG00000047337 ENSRNOT00000041588 2 1 1 80 9 9254145 9262856 ACACATTTATCCACGGATCAG 58 9254085 9254106 TTCTTATTGATCTCCTCAGTGG 57 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589 3 1 2 85 10 95243417 95244262 TTTAAACCCGGAAGCAGGT 60 95244311 95244329 CTTAGGACCTGGAGCAGAG 59 NA Rattus norvegicus 81 Lppr4 ENSRNOG00000016872 ENSRNOT00000022625 3 1 1 80 2 220334546 220334567 CTCAGTATAAGAACCATCCCGT 60 220334607 220337878 CATACAGGCCCAAATACAGC 59 NA Rattus norvegicus 81 B3gnt2 ENSRNOG00000009267 ENSRNOT00000012286 2 1 1 125 14 107594856 107616252 CCCTAGACAAGATATGAGAAATGAG 59 107594755 107594773 TCTTGTCTTGGCTACTGCT 59 NA InUTR Rattus norvegicus 81 Btn1a1 ENSRNOG00000017514 ENSRNOT00000023622 3 1 1 81 17 43905463 43906357 ATCTCCTTACCAGCTCCCT 59 43906399 43906420 GAAACCCTAAGGCCAATATGAC 59 NA Rattus norvegicus 81 Il12a ENSRNOG00000009468 ENSRNOT00000012831 2 1 1 80 2 165076983 165077463 GTCAATCACGCTACCTCCT 59 165077506 165077525 CAGAGACTGGTATGACCCTG 59 NA Rattus norvegicus 81 Ruvbl2 ENSRNOG00000020793 ENSRNOT00000028217 2 1 1 80 1 101416986 101417004 ACTGGCAAGATTTCCAAGC 59 101416784 101416942 CACAAACTTGGTCTGGGAG 58 NA Rattus norvegicus 81 Wfikkn2 ENSRNOG00000002831 ENSRNOT00000003784 3 1 1 90 10 81939320 81941809 AACAGACCAGGAATGTGAG 57 81939248 81939266 TTTCACATCCATGTAGCGG 58 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000087015,ENSRNOT00000091085 1 2 2 60 3 77709920 77709944 GATGATTGTAGACTTCTTACACGAG 60 77709884 77709902 TTGTGTCATACACCAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb4l1 ENSRNOG00000034289 ENSRNOT00000044617 1 1 1 60 14 7949467 7949491 GTTTATCCTAATTTCAGACCCACTC 60 7949509 7949527 CTAAACCTGCCACCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eva1a ENSRNOG00000007118 ENSRNOT00000009321 2 1 1 87 4 112802048 112802066 CTTGGAGATGGCTTTGCTC 59 112822374 112822393 AGAGACAAAGTACAGAGCGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912067 ENSRNOG00000047398 ENSRNOT00000071217 1 1 1 60 8 41911049 41911067 GGACTGACAAACCAACCTG 59 41911089 41911109 TATAGTTCACCAGGAACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536,ENSRNOT00000087194 3 2 2 80 9 66923353 66923373 ATGTAAAGAGGACTCTGTTGG 58 66923414 66925482 CTTCTTCAACAAGAGCTGGA 58 NA Rattus norvegicus 81 Filip1l ENSRNOG00000001645 ENSRNOT00000046383 2 1 1 80 11 45117233 45123149 GAAACCCATGAACGAGTTGG 60 45117172 45117192 ACCATTAAGAGTTGTTCCACG 59 NA Rattus norvegicus 81 Gpatch4 ENSRNOG00000018969 ENSRNOT00000056923 1 1 1 80 2 187422145 187422163 AGAGAAGCCTGACAGAGAC 58 187422205 187422527 TCATCAGTCAGAATCTTTGGG 58 NA Rattus norvegicus 81 Olr1740-ps ENSRNOG00000059858 ENSRNOT00000072074 1 1 1 60 20 1826086 1826104 CTTTGCTTCATCACCACCA 58 1826128 1826146 ACCCATCTCTAGTCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 2 2 2 84 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039664 195039683 TCCTACTATGGACACCTTGC 59 NA Rattus norvegicus 81 Olr1195 ENSRNOG00000047801 ENSRNOT00000050536 2 1 1 60 8 40219763 40219783 TGCTACTCCTCTGTCATTACC 59 40219723 40219741 TGAGGTTTCTTTGGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310335 ENSRNOG00000039183 ENSRNOT00000033837 1 1 1 80 11 54404556 54404575 GCATCAGTCAGTACAAAGCC 59 54401728 54404515 TTTGTCCAGAAACTACCTCCA 59 NA Rattus norvegicus 81 Rnf215 ENSRNOG00000004940 ENSRNOT00000006827 2 1 1 81 14 84369889 84369987 GTGTAGTCCGAGAGTTGGA 59 84370030 84370050 AGCTTGGTGACATTTGAAGAG 59 NA Rattus norvegicus 81 Rn60_14_0458.1 ENSRNOG00000051043 ENSRNOT00000077059 1 1 1 60 14 45951270 45951288 ATCTCTAGAAGTGCTGCCT 58 45951228 45951247 TGTACTTCATCCCAAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102,ENSRNOT00000084702 3 2 2 80 17 48394056 48394078 GAGTCACTACATGAAGTCTACGA 60 48391731 48394017 CAGCACATCACACTTCTCAC 59 NA Rattus norvegicus 81 Dpm3 ENSRNOG00000029077 ENSRNOT00000045477 3 1 1 110 2 188583704 188583845 ACAGACAGAGCAAACATGAC 59 188583918 188583936 TAAAGGTAGCTCCAGACCC 58 NA InUTR Rattus norvegicus 81 Cntn3 ENSRNOG00000006144 ENSRNOT00000008221 2 1 1 80 4 134818013 134818034 TGGGCGTTTACAATAACAAAGG 60 134813711 134817972 CGACTGTAGGCTCTTCCTC 59 NA Rattus norvegicus 81 Emid1 ENSRNOG00000033575 ENSRNOT00000057361 3 1 1 87 14 85393155 85393173 GTCATGTGCAGAATGGCAC 60 85392725 85393104 ACGGTTCTGTAGCTGTTCC 60 NA Rattus norvegicus 81 Eid2 ENSRNOG00000019310 ENSRNOT00000026114 2 1 1 60 1 85516718 85516739 ACGTTTACTATAGCCCTAACTG 58 85516679 85516700 AACCCAGTTCTTCTATTAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910235 ENSRNOG00000047720 ENSRNOT00000073468 2 1 1 81 9 4326104 4326122 CCATGTAAAGGGATGGTGG 58 4324681 4326061 TTTAGGGTCCTCTTTCATGTC 57 NA Rattus norvegicus 81 RGD1560695 ENSRNOG00000046438 ENSRNOT00000075402 2 1 1 60 1 18511424 18511442 ATGTGGTGAATCGTCTCGT 59 18511382 18511401 AAGGCAGGGATAAAGAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216,ENSRNOT00000079368 1 2 2 80 17 47393589 47393608 ATGAGCTGCCTGTCTATGAC 60 47392322 47393546 TCCACTTCACATCTTCCGG 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 3 2 2 80 20 9621870 9624409 CTTTGTCAACAATGAGGTCCAG 60 9624450 9624468 TCCCTCTGGATGTTCAAGC 59 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 2 2 2 80 15 56764461 56764480 TTGCTATCTACCTACCACCC 58 56764521 56767193 GTTCTGTGCAAGTTAAACCAG 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332,ENSRNOT00000017322,ENSRNOT00000017412,ENSRNOT00000079688,ENSRNOT00000017417 1 5 5 80 1 20921049 20925657 CACACTTTCTACAGACTCGT 57 20920988 20921006 ACTGTAGCGGAATTTGGAC 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332,ENSRNOT00000017322,ENSRNOT00000017412,ENSRNOT00000079688,ENSRNOT00000017417 3 5 5 80 1 20921049 20925658 TCACACTTTCTACAGACTCGT 59 20920989 20921007 CTGTAGCGGAATTTGGACC 59 NA Rattus norvegicus 81 Iqcb1 ENSRNOG00000038868 ENSRNOT00000066616 3 1 1 80 11 66875114 66875135 TCCTCAGTCAAGATTCTTCTCG 60 66870020 66875076 CACAGCAATGGCTTAGTATCTG 60 NA Rattus norvegicus 81 Hsh2d ENSRNOG00000023614 ENSRNOT00000038494 1 1 1 80 16 19339478 19339498 CTGGTTCAGGATAATGGAAGG 58 19337990 19339436 TTCAGAAGCCTCTTCAGGT 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000001014 1 1 3 80 20 2101567 2103340 CAAGGAGAGGATATGAGAAAGAC 58 2101288 2101306 AGGGAGATCCTCCTCTGAG 59 NA Rattus norvegicus 81 Cyp4f40 ENSRNOG00000043344 ENSRNOT00000066654 3 1 1 80 7 14877582 14877780 CTTCATGTTTGAGGGCCAC 59 14877824 14877842 TGGTATTCTGGGTGCTTCG 60 NA Rattus norvegicus 81 Olr401 ENSRNOG00000045719 ENSRNOT00000040288 3 1 1 60 3 15931284 15931305 TTGGGCTATATCTAGTTCCCTC 59 15931326 15931344 ACAGCCACAATGACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1143 ENSRNOG00000048354 ENSRNOT00000044135 3 1 1 60 8 19289692 19289715 CTCTGTAACCTGTCCTTTAATGAC 59 19289732 19289752 ACAACATCTTTGGGATTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000068093 3 1 3 80 4 118484893 118484916 CTGAAAGAAAGAAGAGATGAGGAG 59 118484072 118484858 CAGATCTTCCTCAGTAATCTGAC 58 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 1 2 2 73 6 51015567 51017093 TAAAGCAACAGCGAACAGG 59 51015512 51015532 TGTTGATTTCCAGAACAGGAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07029742.2 ENSRNOG00000046598 ENSRNOT00000072548 1 1 1 60 10 48995546 48995565 ACAAACCCGATATGGTTGAG 58 48995585 48995606 GTTTCTGTCTTCTTCAACTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb2 ENSRNOG00000010935 ENSRNOT00000014909 1 1 1 80 15 57312699 57314247 ACTTACGAGGTTGTTCTCTG 57 57314290 57314308 CGCATTCACAAAGAAGTGG 58 NA Rattus norvegicus 81 P2ry10 ENSRNOG00000037839 ENSRNOT00000048695 3 1 1 109 X 78196503 78196524 GGAAAGGAATAATGGATGCCAC 60 78207784 78207802 TACTCTCAACAGTGCTGGT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07062535.1 ENSRNOG00000049935 ENSRNOT00000075453 3 1 1 80 4 181484669 181484688 GTATCATCTCAGCCATGGCT 60 181484573 181484626 CAGTAGCCATGGAGTAGCC 60 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578,ENSRNOT00000088720 2 2 2 80 6 72393797 72395034 CGGAGACAAGGAACATGGA 59 72393735 72393759 GTGTTGAAAGAGGTAACCATATGAG 60 NA Rattus norvegicus 81 RGD1306750 ENSRNOG00000042018 ENSRNOT00000067909 2 1 1 84 4 166801497 166801516 ATACCAGCAACCAAGAAGAG 58 166800339 166801453 CCCATTTACTTTCTGACATTGC 58 NA InUTR Rattus norvegicus 81 AC106648.1 ENSRNOG00000042252 ENSRNOT00000065781 1 1 1 113 10 97647560 97647578 GATCTGGTCTGGTTCGGTC 60 97647463 97647481 AGCAACGTGATCAAAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 AC106648.1 ENSRNOG00000042252 ENSRNOT00000065781 2 1 1 114 10 97647560 97647578 GATCTGGTCTGGTTCGGTC 60 97647462 97647480 CAGCAACGTGATCAAAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r62 ENSRNOG00000032819 ENSRNOT00000044964 3 1 1 60 1 75326691 75326711 GTTGTGGCTTCTAGGTATTCC 59 75326733 75326751 TGGAGTGATAGCGAACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076397 2 1 5 105 7 120763793 120764149 CTCTTCCAGAGGTCCTGAG 59 120763706 120763725 CTGAAGCTGTCTTCAGACAC 59 NA InUTR Rattus norvegicus 81 LOC681325 ENSRNOG00000023005 ENSRNOT00000030692 2 1 1 96 X 80359620 80359641 GACCAAATCCTTAGGTATCCTG 58 80360594 80360613 TTAGGAAGGCTTCTCCAAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zmynd15 ENSRNOG00000019477 ENSRNOT00000046807 3 1 1 80 10 57069826 57069847 TCTTCAAATCAGGGTGTCTACC 60 57069884 57070020 CCGGAGTTAAATCCAATAACCAG 60 NA Rattus norvegicus 81 Ints1 ENSRNOG00000047880 ENSRNOT00000001727 1 1 1 80 12 18079449 18079467 AACTTCCAGGCTTTCTGTC 58 18079510 18080142 AAACCGCTCCTTAAATTCCA 58 NA Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000004058 2 1 2 80 10 61780653 61780676 TCAAGGAGATATCTCTAGGTATCG 59 61780715 61780982 GCCTTCAGATACCAACTGC 59 NA Rattus norvegicus 81 Lnx2 ENSRNOG00000000955 ENSRNOT00000001263 1 1 1 80 12 9786130 9786152 CTTTCAGTGAGAATGAGTACGAC 59 9786192 9789975 AGCTATGAAGGGCACTTGG 60 NA Rattus norvegicus 81 LOC100360791 ENSRNOG00000033517 ENSRNOT00000044222 1 1 1 60 1 20116092 20116112 GCAAGATGGTCAGTAGAACAG 59 20116133 20116152 GAAGCATTTCCACCAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc19 ENSRNOG00000022225 ENSRNOT00000037206 3 1 1 80 5 113616463 113617128 GTGGAACTCAGAGCATGAG 58 113616401 113616419 AGTGAGGTTAGCAGGACAG 59 NA Rattus norvegicus 81 Wdr43 ENSRNOG00000026316 ENSRNOT00000035320 2 1 1 80 6 23460222 23460243 AAGATGTTACTTTCAGCTGGTC 59 23458206 23460181 GTGTCCTGTGAAGTGTCTG 58 NA Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000077087 2 1 2 242 12 18931540 18931558 TTCCCGGTACGGATAAACC 59 18937641 18937661 CATCTTGCCTGGATTTCTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 2 2 2 80 2 164611575 164614767 GATTTAAAGTTAGCGATCCGGAG 60 164614805 164614825 TTTGTTCTTCAGAGCACTTCC 59 NA Rattus norvegicus 81 Ccdc112 ENSRNOG00000003559 ENSRNOT00000004742 3 1 1 81 18 40230752 40230772 TGGCCAAGATACATAACAACG 59 40228878 40230710 AGCTTCTCAACAAAGTCAGG 58 NA Rattus norvegicus 81 Phlpp1 ENSRNOG00000002821 ENSRNOT00000003840 3 1 1 80 13 26325531 26325552 AACTGTATGGAGACCCTTAGAC 59 26325589 26340148 GAGTATGTTCAGTCTTAGGTCCA 59 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 2 2 2 80 9 66013520 66013541 CAGAAGCTATCAGAGCATTCAG 59 66009843 66013481 TTCTTCTACAAGAGGCTGGAC 60 NA Rattus norvegicus 81 Ahcyl2 ENSRNOG00000039300 ENSRNOT00000025165 3 1 1 80 4 57169161 57171258 GGAGTCCATAGGCTGTACC 59 57171299 57171320 TTTAGTGACTGAGTCATTGACG 59 NA Rattus norvegicus 81 Ttc36 ENSRNOG00000014700 ENSRNOT00000019933 3 1 1 83 8 49109778 49109798 CCATCCTCAACCCTAATACCC 60 49108825 49109736 AAACTCCATCTTCATCTCCCTC 60 NA Rattus norvegicus 81 Gpalpp1 ENSRNOG00000001037 ENSRNOT00000001371 2 1 1 80 15 58162570 58164841 CTTCAACTCAGAGGAAGCAG 58 58162509 58162530 CTATAGTCAACTGGTCCTTTCG 58 NA Rattus norvegicus 81 Olr1106 ENSRNOG00000033022 ENSRNOT00000048039 1 1 1 60 7 139978438 139978458 TCATCAATATCCTTGTCGCTC 58 139978398 139978419 AAGTGGTGAATATTCTGAGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000041237 3 1 2 81 18 40586487 40587354 GCTGCATTTGTCACTACTGG 60 40596079 40596098 AGAGTCCTGGCTTCTAACAG 59 NA InUTR Rattus norvegicus 81 RGD1564148 ENSRNOG00000004092 ENSRNOT00000005433 2 1 1 60 10 55222789 55222807 AGTATGAAGCGTGGAAGGT 59 55222747 55222765 TCTCGGTCTTCTCTGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasa2 ENSRNOG00000011909 ENSRNOT00000016327 1 1 1 80 8 104477361 104480761 GTCTTCTACTTTGAGGTAACCA 58 104477302 104477322 CTTCTCAATGTCTTCCTCCTC 58 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 1 1 1 60 13 99099825 99101101 GAAGAAACCTCATCGTTACAGG 59 99099786 99099806 CTGATAGCGTCTGATTTCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Nufip1 ENSRNOG00000001033 ENSRNOT00000001366 2 1 1 80 15 58187319 58187339 GATTTGAAGCCTGAAATTCCG 58 58187380 58194216 CTTATCAGACTCAGAGTCGC 58 NA Rattus norvegicus 81 Ppp1r27 ENSRNOG00000036690 ENSRNOT00000054959 3 1 1 94 10 109728548 109728567 TATGGTGCTGACATTCACCA 60 109728193 109728494 ATGAGATACCTGGCTATGTCAG 59 NA Rattus norvegicus 81 Mettl7b ENSRNOG00000007927 ENSRNOT00000010760 2 1 1 61 7 3386018 3386036 AGTCCTTCAGGAAGTCCAG 58 3384595 3384613 CATGCTCCCAGAAGAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 3 2 2 80 17 54375304 54380670 AGTACAAGCTGGTTTGGGA 59 54380714 54380732 TGATGCCATTTCAATCGCT 58 NA Rattus norvegicus 81 Gng13 ENSRNOG00000039350 ENSRNOT00000030273 1 1 1 87 10 15090463 15090481 GAAGAAGGAGGTGGAGAGC 60 15090532 15090674 AATCCACTTGAGGAGCTCG 60 NA Rattus norvegicus 81 Wrnip1 ENSRNOG00000017040 ENSRNOT00000023332 3 1 1 81 17 32939664 32939687 GTTCTGATCACTGAGAATGATGTG 60 32935841 32939624 TGTAGTGCTCTTCTCCTGC 59 NA Rattus norvegicus 81 Olr1163 ENSRNOG00000030569 ENSRNOT00000045215 2 1 1 60 8 20172684 20172703 CATGAACCCTCGAATCTGTG 59 20172643 20172663 GACCCAGAACATAATGATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 2 2 2 80 4 179500994 179512375 GATCCTACGATAGAGGACTCC 58 179500934 179500953 TGCTGTGTCGAGAATATCCA 59 NA Rattus norvegicus 81 Rn60_5_0814.8 ENSRNOG00000051121 ENSRNOT00000077051 1 1 1 60 5 78064041 78064060 ACCATCAAAGAACGCATACC 59 78064000 78064018 AAAGCTATCCAGCATTCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspb3 ENSRNOG00000010992 ENSRNOT00000014627 3 1 1 60 2 45517957 45517975 ACCAAAGATTTGTCTGCCA 58 45517915 45517934 GATCCTTTACTTCCACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk14 ENSRNOG00000033706 ENSRNOT00000029197 2 1 1 84 1 99620484 99620895 CATGTCAGGGTGATTCTGG 58 99620942 99620961 ATAGCACAACGTTCCATTCC 59 NA Rattus norvegicus 81 Hcar1 ENSRNOG00000026661 ENSRNOT00000032274 3 1 1 60 12 38145638 38145659 GACTGTGTATCTTCTGATGGAG 58 38145679 38145698 CTCACAAGATGACACCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba2 ENSRNOG00000021113 ENSRNOT00000028672 1 1 1 80 1 90025328 90025346 CAATGGACAAACTCTGGCG 60 90024237 90025285 TGGCTTCTTCTCCTTGACTC 60 NA Rattus norvegicus 81 Il16 ENSRNOG00000011680 ENSRNOT00000016289 1 1 1 80 1 145826575 145826593 TCAGAAGCACAAAGTAGCA 57 145821480 145826531 GGGATTAACACTGGTGGAG 58 NA Rattus norvegicus 81 Tead3 ENSRNOG00000000506 ENSRNOT00000000607 1 1 1 80 20 7914945 7914963 TGTCTTCTCCACCTCAAGG 59 7914514 7914819 AAGGGCTTGATGTCCTGAG 59 NA Rattus norvegicus 81 Celf1 ENSRNOG00000010379 ENSRNOT00000014484 1 1 1 80 3 79835839 79837792 CAGAAGGAAGGTCCAGAAGG 60 79837834 79837853 CATCTGCAGTAAGTCCTGGT 60 NA Rattus norvegicus 81 Rn60_5_0814.32 ENSRNOG00000051091 ENSRNOT00000076117 1 1 1 85 5 77311530 77312211 CTCGATGGGAAATCAAGATCC 59 77311465 77311484 TATTCGCCCTCACTGAAGAC 60 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919,ENSRNOT00000043448 2 2 2 80 10 64994916 64994935 TGGCACAGATGAATGATCTC 58 64994433 64994873 GAGCTTGTAGCTTCTCCTG 58 NA Rattus norvegicus 81 Cdr2 ENSRNOG00000017260 ENSRNOT00000023189 1 1 1 80 1 190914506 190914524 TGGCAGATAACCTTGTGGA 59 190901417 190914462 GTTGGAGATCTTGCTGGAG 58 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476 2 1 2 80 18 41361150 41363679 AGGAGACTGTCACAATTCCT 58 41355498 41355517 GCTGAGTCTGATGTAGTGGT 59 NA Rattus norvegicus 81 Zfp36 ENSRNOG00000058388 ENSRNOT00000090129 2 1 1 82 1 85380161 85380851 ATCTACGAGAGCCTTATGTCG 59 85380895 85380913 ATGTTCCAAAGTCCTCCGG 60 NA Rattus norvegicus 81 Olr245 ENSRNOG00000030215 ENSRNOT00000043135 1 1 1 60 1 172243212 172243230 TCAACCTGTTCCTCTCACC 59 172243254 172243272 AGACAAAGCAGGCAAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 3 2 2 81 8 114345220 114345238 CACTGTCATCCCTCCAGAG 59 114345282 114348036 CCTGAACAGCTGCAATTACC 60 NA Rattus norvegicus 81 Cacng1 ENSRNOG00000003245 ENSRNOT00000004349 3 1 1 80 10 95923573 95923591 ATTGCTCCTACTTCAGGCA 59 95922366 95923531 AGATGCTGTACTCCTTCTGAG 59 NA Rattus norvegicus 81 Spatc1l ENSRNOG00000001262 ENSRNOT00000001704 2 1 1 81 20 13169953 13169971 TAAGAAGGTGTGCTTCTCG 57 13165684 13169909 ACTCTGGATCTCATTGAGGT 58 NA Rattus norvegicus 81 Tlr4 ENSRNOG00000010522 ENSRNOT00000014020 1 1 1 80 5 82593141 82598214 GCTGGATTTATCCAGGTGTG 59 82598256 82598275 AGTACCAAGGTTGAGAGCTG 60 NA Rattus norvegicus 81 LOC100359498 ENSRNOG00000038678 ENSRNOT00000059047 1 1 1 60 14 78741364 78741382 TCGTGCCAAATTCTGAAGC 59 78741405 78741424 CATCACACGGATTCTGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773,ENSRNOT00000089005 1 3 3 80 20 13968623 13968641 AACTTCCTGACAGAACTGC 58 13968684 13968885 ATAGTCAGTGAAGAATCGGC 58 NA Rattus norvegicus 81 Cyp2c7 ENSRNOG00000046080 ENSRNOT00000030039 2 1 1 87 1 147583932 147585433 TATTTCATTCCCAAGGGCAC 58 147585483 147585501 CAAACTTCTCTGGGTTGGG 58 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 1 2 2 80 4 133318862 133318880 AAATGGTTTGCCTGAGAGC 59 133318923 133319615 GCTGAAGAATCACTGTGTCC 59 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 1 3 3 80 20 2205231 2205628 GTATAAGACAGTAAGCGTCACC 59 2205172 2205191 GTAATGCACTTCCAGTCCTC 58 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 1 2 2 80 16 20337521 20337540 AATGCCTAATCAGCCTCTCC 60 20337583 20339263 CCAGGAACAGCTGGATCTC 60 NA Rattus norvegicus 81 Cyp3a18 ENSRNOG00000000969 ENSRNOT00000001285 3 1 1 80 12 10680536 10683767 TTGTGAGAAGACACAGATCC 57 10683809 10683828 ACAAGCTTTAGGATGATGGG 58 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000066362 1 1 2 101 14 84233118 84244977 ATCATCAGTGGTTTCCTGAG 57 84245038 84245059 GCAATAGGAAACTGGTTAAGAG 57 NA Rattus norvegicus 81 Zfp862 ENSRNOG00000024795 ENSRNOT00000048576 1 1 1 80 4 78146519 78146537 CCACATTTGAGGACTTGGC 59 78151550 78156135 ATACATACAACTCTAGGGTGAGC 60 NA Rattus norvegicus 81 AABR07031918.1 ENSRNOG00000051569 ENSRNOT00000086651 3 1 1 89 18 39173119 39173141 CTCTGAAATGCCTTATCAGTCTC 59 39173185 39209268 CCACCATGAATAACTGTATTTCCC 60 NA Rattus norvegicus 81 Cryga ENSRNOG00000014790 ENSRNOT00000019963 2 1 1 80 9 71830416 71830434 GGGACTACCCTGACTACCA 60 71828631 71830374 GAGAGCTGGTATAGGGAATGG 60 NA Rattus norvegicus 81 Vdr ENSRNOG00000054420 ENSRNOT00000082429 1 1 1 80 7 139346985 139354200 CAGGATTCAGGGATCTCAC 57 139346923 139346941 TGGAGCGTAACATGATCAC 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 2 2 2 89 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487489 69487508 GCTTGAGTTTCCAGTTCCAC 60 NA Rattus norvegicus 81 Pgap1 ENSRNOG00000013388 ENSRNOT00000017967 1 1 1 80 9 61093602 61093625 CTAAGACTTCAAGACTATCCATCC 58 61090187 61093565 GTCTACAACAAACTTGCTTCC 58 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 2 3 3 80 15 51815488 51815507 CACGATTCTATAACAGCCGA 58 51815548 51817862 CCGAGTAGTAGATAACCTGTG 57 NA Rattus norvegicus 81 Ubash3a ENSRNOG00000001167 ENSRNOT00000001541 2 1 1 80 20 9961535 9970547 TTAAGCACAGGACATACACG 58 9970590 9970608 CATTTCTCCTGCTACTGGC 58 NA Rattus norvegicus 81 Rn60_20_0048.4 ENSRNOG00000048140 ENSRNOT00000071931 2 1 1 63 20 2623331 2623349 TCACTTACAGGGAGCACTG 59 2637497 2637516 AGGGTCACATGTACCTTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnv1 ENSRNOG00000004117 ENSRNOT00000005556 2 1 1 80 7 84022781 84022801 TCCTTTCTTCAGGAGATCCAG 59 84021914 84022742 TCTTCTGAAGTATCTGTCCCTG 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 2 2 2 80 8 71191713 71191732 CTGATAGCAACACCAAACCC 59 71191774 71192199 CATCAGGTCATAAGGGTCCC 60 NA Rattus norvegicus 81 Samt3 ENSRNOG00000029010 ENSRNOT00000040231 3 1 1 80 X 54554455 54555951 CCTGCAATATACAAAGGTTTGC 59 54555992 54556010 CCAAAGCTATTAGGCTGCA 58 NA Rattus norvegicus 81 Olr12 ENSRNOG00000033009 ENSRNOT00000047063 2 1 1 60 1 149578599 149578617 ATTCTTCGCATCCGTACCA 59 149578557 149578576 GGTGAGATGAGCATGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alx4 ENSRNOG00000000008 ENSRNOT00000000009 2 1 1 81 3 82576125 82576143 TACCCTGATGTGTATGCCC 59 82576188 82582886 GGTTCTGGAACCAAACCTG 59 NA Rattus norvegicus 81 Alx4 ENSRNOG00000000008 ENSRNOT00000000009 3 1 1 81 3 82576123 82576142 ACTACCCTGATGTGTATGCC 59 82576186 82582884 TTCTGGAACCAAACCTGCA 60 NA Rattus norvegicus 81 Olr780 ENSRNOG00000048669 ENSRNOT00000052368 1 1 1 60 3 103140878 103140896 TGCTCTTTGTGTTCTCCTC 57 103140836 103140854 ACGATGAGTGAGTTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxn1 ENSRNOG00000010870 ENSRNOT00000014672 1 1 1 80 10 65624299 65624457 CATGGCCAAACCAGAAGAG 59 65624237 65624255 GGTGGACATCCTAGCAGAG 59 NA Rattus norvegicus 81 Olr831 ENSRNOG00000050429 ENSRNOT00000052024 3 1 1 60 4 148690434 148690452 ATCCACCTCTCCTGTTCTG 58 148690392 148690411 TCAAAGCAAGGGCAAATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 3 2 2 80 8 114927969 114929259 GATGAACTTCTTCCTAGAGAAGC 59 114927911 114927930 CATTCAGCTGACGAATGTGG 60 NA Rattus norvegicus 81 Pou4f3 ENSRNOG00000018842 ENSRNOT00000025465 1 1 1 84 18 36713919 36713937 AGAACCCAAATTCTCCAGC 58 36713985 36714324 TATATTACCCTGCAGCTGC 57 NA Rattus norvegicus 81 Bpifb5 ENSRNOG00000025238 ENSRNOT00000034798 3 1 1 80 3 149711366 149711795 TACACATCATTCTTCCTCCTG 57 149711836 149711855 CTCCTTCTGTGAACTCTGTG 58 NA Rattus norvegicus 81 LOC100910150 ENSRNOG00000033015 ENSRNOT00000040657 3 1 1 82 18 52465341 52465361 AGATATCAACCGAGCATACCA 59 52465405 52487503 CCAAAGGAGCAAGAACCAG 59 NA Rattus norvegicus 81 Mxd1 ENSRNOG00000017720 ENSRNOT00000023856 1 1 1 80 4 118471594 118471613 CCATACAGTAGCAAGGACAG 58 118466095 118471552 GTGAGTTGATCTGCTACTGG 58 NA Rattus norvegicus 81 Anks1b ENSRNOG00000024870 ENSRNOT00000059269 2 1 1 80 7 30714794 30727487 AGCTGTCAAACAGAGAAGG 57 30727531 30727549 TTCTAACAGAACTCGCACC 58 NA Rattus norvegicus 81 Lcn5 ENSRNOG00000058597 ENSRNOT00000061855 2 1 1 81 3 2877780 2879301 CCTACTACAGTGAGGACCAC 59 2879345 2879363 CTGGTGACCTGAAACTTCG 59 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 2 3 3 80 17 59742610 59746541 CTAAGACTCGAGGGAGAAGC 59 59746584 59746602 CTGGGTTAGGAAGGAAGCA 59 NA Rattus norvegicus 81 Twist2 ENSRNOG00000020355 ENSRNOT00000027597 2 1 1 290 9 98924514 98924533 CAATAAGATGACCAGCTGCA 58 98967980 98967998 AAGGATGTGAACCTGGCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Uckl1 ENSRNOG00000050277 ENSRNOT00000020695 1 1 1 80 3 177066392 177066411 ACGTGTGAGAATCATCACCA 60 177066254 177066349 CCAAAGTTCCCAATGCCTG 59 NA Rattus norvegicus 81 LOC100912852 ENSRNOG00000047003 ENSRNOT00000071620 2 1 1 137 9 12420447 12420932 ACAGTTCCTACCGCATCAG 60 12421033 12421051 TTGTCTCCACAGAGGATGC 59 NA Rattus norvegicus 81 LOC100910698 ENSRNOG00000037698 ENSRNOT00000045591 1 1 1 80 X 105938374 105938394 GAACACCTTAAGGAACTCAGC 59 105938434 105939362 ACCAGGTGGTAAGATTCTGAG 59 NA Rattus norvegicus 81 Cdk2ap2 ENSRNOG00000018391 ENSRNOT00000025018 2 1 1 80 1 219346599 219346705 TATGTACAGGCAATGAAGCC 58 219346746 219346766 CATCTCCTCTATGACAGACAG 57 NA Rattus norvegicus 81 Cdk2ap2 ENSRNOG00000018391 ENSRNOT00000025018 3 1 1 81 1 219346599 219346706 TATGTACAGGCAATGAAGCCA 60 219346746 219346767 CCATCTCCTCTATGACAGACAG 60 NA Rattus norvegicus 81 Fam26e ENSRNOG00000000825 ENSRNOT00000057313 2 1 1 87 20 27652854 27657256 AGTCTCAGATTCTAGGATGGT 58 27652787 27652805 ACTTTAGATCTGCAGCGTG 58 NA Rattus norvegicus 81 Srsf12 ENSRNOG00000051383 ENSRNOT00000091482 1 1 1 80 5 48474718 48483713 GATAGCCTGAAAGAGCAGTC 58 48483754 48483774 TCTTGATCGTCCTCTAGATCC 58 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 3 2 2 80 4 8177394 8178014 ACTATTCCAGAGATGAAGACCA 59 8178055 8178073 TTCCAGACAGAGCAAAGTG 58 NA Rattus norvegicus 81 Vsig4 ENSRNOG00000038132 ENSRNOT00000032121 1 1 1 80 X 65371538 65371872 AGGTGAGCAGGATGTATGC 60 65371476 65371496 TGAAGTATGCACTTGCAATGG 60 NA Rattus norvegicus 81 Vsig4 ENSRNOG00000038132 ENSRNOT00000032121 3 1 1 83 X 65371870 65373840 CATTCCAAGAGTATGTCTATGAGG 59 65371494 65371512 TGGTAGTCACTCTTGTGGT 58 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313,ENSRNOT00000039652 3 2 4 80 2 8935261 8938884 CAATGCTATGGAAGAGGTGC 59 8935200 8935219 GTCTTCAAATCAGGGCTTGC 60 NA Rattus norvegicus 81 Olr25 ENSRNOG00000046609 ENSRNOT00000041243 3 1 1 60 1 150130151 150130172 TCCTACTTAGTATGCTGTTCCT 58 150130190 150130211 ATGATAAGGTTCCCTAACAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger1 ENSRNOG00000004094 ENSRNOT00000005470 1 1 1 152 19 24802129 24802148 CATCACTTCAACCACAGCTG 60 24802263 24802706 AACACCACCAATACCAGCA 60 NA Rattus norvegicus 81 Ptger1 ENSRNOG00000004094 ENSRNOT00000005470 2 1 1 153 19 24802128 24802146 CCATCACTTCAACCACAGC 59 24802263 24802706 AACACCACCAATACCAGCA 60 NA Rattus norvegicus 81 Zfp551 ENSRNOG00000047230 ENSRNOT00000074063 3 1 1 84 1 66899020 66899038 TACTGCAATGTGATGCTGG 58 66900370 66900391 CACAAGTTACCTCTTTACTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mmp8 ENSRNOG00000009907 ENSRNOT00000013936 2 1 1 80 8 5768990 5770765 AACTGCTGAGAATTACCTACGA 59 5770805 5770824 GCAATCATAGTGGCATTCCT 58 NA Rattus norvegicus 81 E2f2 ENSRNOG00000047741 ENSRNOT00000072618 1 1 1 80 5 154526047 154527927 AACAAGAAACTGGCCTATGTG 59 154527969 154527987 CTTGACCGCAATCACTGTC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000005428 1 1 4 80 10 67536189 67539774 CTGCACATGGATTCTTCCT 58 67539818 67539836 TTTCTTCTGAGACGCACTG 58 NA Rattus norvegicus 81 Iglon5 ENSRNOG00000017918 ENSRNOT00000024150 1 1 1 80 1 98450020 98450038 AGTCTGGAGTTCAGCTCAC 59 98450080 98450922 CTCATCAATGAAGCAGCTGAG 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076460 3 1 4 80 15 36878958 36879185 CATTGTACACAGGCATCCC 59 36879226 36879247 CTTCTGAAGCTCTGTAGTTGAC 59 NA Rattus norvegicus 81 Lkaaear1 ENSRNOG00000024815 ENSRNOT00000034209 2 1 1 100 3 177205683 177205807 GATATACACAGGACTGGAGCA 59 177205603 177205621 CTTACGCTTCTCACCAGCT 60 NA Rattus norvegicus 81 Osbpl11 ENSRNOG00000001782 ENSRNOT00000002428 1 1 1 80 11 70833133 70833151 GTGTCATCAGCAGTAGCAG 58 70820605 70833090 CACTCTCCATGTGATCACTG 58 NA Rattus norvegicus 81 Prickle2 ENSRNOG00000012364 ENSRNOT00000016628 3 1 1 80 4 124289190 124298293 TGCCCAACATATAGGAATTGAC 59 124289131 124289149 CAGCAGAAACAGTTCTCCG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000020160,ENSRNOT00000020204,ENSRNOT00000074146 2 4 7 132 17 57082612 57082630 CTACTGCTTTGCCACAAGG 59 57082724 57088179 CATTCTTTAGCAGCTTCCCTG 59 NA Rattus norvegicus 81 Gpr55 ENSRNOG00000017521 ENSRNOT00000023546 3 1 1 60 9 92963449 92963468 CATTCAAGATGATCCTGCCA 58 92963408 92963426 ACAAATGTGCAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683549 ENSRNOG00000022136 ENSRNOT00000033595 3 1 1 81 11 60152315 60152333 ATCGTGCTCAAGATTCCAG 58 60152378 60159040 TATACATGTCCGTGAGCCT 58 NA Rattus norvegicus 81 RGD1564730 ENSRNOG00000030045 ENSRNOT00000047012 2 1 1 60 9 99365116 99365136 GAATGTCAGGAAGTTGAGACG 59 99365076 99365097 GAACTTGGTGTGCTTAGTAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Disp1 ENSRNOG00000003635 ENSRNOT00000004834 2 1 1 88 13 101463758 101463776 CAGGCGATCATCATGAGAG 58 101461345 101463706 GTAGCCATCACTTGGAACG 59 NA Rattus norvegicus 81 Slc26a2 ENSRNOG00000018082 ENSRNOT00000024374 3 1 1 92 18 56524251 56524272 CATACATTAGACGGACTCTGTG 59 56522402 56524200 CATGGCTACCTGATAAACTCC 58 NA Rattus norvegicus 81 AABR07072759.1 ENSRNOG00000052461 ENSRNOT00000088298 1 1 1 80 2 193837912 193837932 AGAGAAGGTGGTGGAACTC 59 193837850 193837871 GACACTTCTTCTGACAGATCAG 59 NA Rattus norvegicus 81 AABR07072759.1 ENSRNOG00000052461 ENSRNOT00000088298 2 1 1 80 2 193837469 193837491 TTAAAGTCTGGATACCAAGCAG 58 193837410 193837430 CTTCCGATGAATAGGAACCAG 58 NA Rattus norvegicus 81 Kmt2a ENSRNOG00000015133 ENSRNOT00000020573 1 1 1 80 8 49146619 49147095 AGAGTGGACTTTAAGGAAGACTG 60 49146561 49146580 TATGGGAACAGAGGTCAGGA 60 NA Rattus norvegicus 81 Aqp2 ENSRNOG00000054378 ENSRNOT00000091717 2 1 1 81 7 141240978 141241354 TCCTTGGGATCTATTTCACCG 60 141241396 141241415 TCATCAAACTTGCCAGTGAC 59 NA Rattus norvegicus 81 AABR07066753.1 ENSRNOG00000032086 ENSRNOT00000040323 1 1 1 69 9 14779790 14779808 TACCTGCTCTCCTCAATGC 59 14780082 14780100 GAAGTACCTCTGGGTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07009224.1 ENSRNOG00000042602 ENSRNOT00000068507 2 1 1 66 2 89498258 89498277 AGAAAGTCGACATTGAAGCT 58 89498211 89498229 CCTTTGTGAACAGAGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csta ENSRNOG00000023953 ENSRNOT00000039075 2 1 1 88 11 67563987 67566793 TTCATTAAGATGGATGTGGGAC 58 67566840 67566860 CCAGTCAGTTTCAAATCACTG 58 NA Rattus norvegicus 81 Thap3 ENSRNOG00000026840 ENSRNOT00000055487 3 1 1 82 5 169156257 169156275 CTCAGGGAGGAACATGGAC 60 169155936 169156213 TATCTGGTAACACCTGTTGCA 60 NA Rattus norvegicus 81 Vom2r23 ENSRNOG00000048963 ENSRNOT00000073415 3 1 1 82 8 4036234 4036252 TACTTACGGGACCATCGTG 59 4036298 4037450 TCCAAAGGTAAGCTGTGGA 59 NA Rattus norvegicus 81 Lsm6 ENSRNOG00000049370 ENSRNOT00000071471 1 1 1 87 19 32781420 32781438 GCATTGGAACAGACAGAGG 59 32781488 32783512 TGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227,ENSRNOT00000080365 1 2 2 80 18 57150322 57150342 TCTGAAACTTCCATCTCACCC 60 57148398 57150286 GATCTCATTATCCACTTTAGCACAG 60 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 3 2 2 80 13 44504948 44507315 AGTTAGTAAGAGCAAGCAAGG 58 44508902 44508921 GACAGAAGGTCGTAAGATGC 59 NA Rattus norvegicus 81 B3gntl1 ENSRNOG00000049724 ENSRNOT00000071141 2 1 1 80 10 110807923 110814352 ATTCAGTCCTTGAGATGACCA 59 110807863 110807881 TGAAGGACTTCCAGTGAGG 59 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 1 1 2 99 X 63290361 63291043 CGCCACATTGGATGTTACC 59 63288341 63288359 CCCATGAGCTACATGACCA 59 NA Rattus norvegicus 81 Kif5b ENSRNOG00000017466 ENSRNOT00000023861 3 1 1 80 17 54198799 54199342 ACTTGATGACAAGGATGAAGAG 58 54199380 54199401 TCTTCCTGATCCAACATTTGTG 59 NA Rattus norvegicus 81 Olr210 ENSRNOG00000029365 ENSRNOT00000042820 3 1 1 60 1 170796776 170796794 GCATGTCCCAGGTAATCAG 58 170796816 170796836 CAAGCCAACTTCAACAATGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1364 ENSRNOG00000048685 ENSRNOT00000060994 1 1 1 60 10 12385347 12385368 GAACCCTTTCATCTATAGCCTG 58 12385308 12385327 GAGCAGTTTCCTTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000079448 2 1 11 80 6 99062154 99062172 CGAACTGCAAGCTTACACC 60 99062214 99063802 TCTGTCATACTTCCCTGTGTC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905,ENSRNOT00000078093,ENSRNOT00000058735 3 3 11 71 6 99152516 99152534 CTACCATTGCAACTGCTGC 60 99152569 99152587 GTAGTCATCTTCGGAGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.30 ENSRNOG00000051103 ENSRNOT00000076250 2 1 1 60 5 77359450 77359471 GTTAAGCGGTATATGAATCCCA 58 77359411 77359429 CACAGCAGCACATCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910010 ENSRNOG00000048560 ENSRNOT00000075191 1 1 1 60 2 115188648 115188666 GCACGATCATCCTGATCCT 59 115188689 115188708 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393,ENSRNOT00000057986,ENSRNOT00000058000,ENSRNOT00000089234 2 5 5 119 1 79685717 79688712 TTCCTTCACGTGAAATCCTC 58 79685617 79685635 GTGAACACGGAGAAGAACG 59 NA Rattus norvegicus 81 LOC100911909 ENSRNOG00000050809 ENSRNOT00000045673 2 1 1 60 10 62365565 62365588 GTATTATACTCCCTGTTGCATACC 59 62365528 62365549 AGTTATCCTCACAGAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfals ENSRNOG00000015061 ENSRNOT00000020233 3 1 1 162 10 14240396 14240414 TGTACAAGGAACAATGGCC 58 14241656 14241674 ATCATGGCTGCAGGTACAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324,ENSRNOT00000068328 1 2 2 80 3 162539693 162539714 TTTATCACGCTAAGTGTCTGAG 58 162536442 162539658 CTACTGTAATCTTCTCACATTCAGG 59 NA Rattus norvegicus 81 Uba5 ENSRNOG00000011027 ENSRNOT00000015240 2 1 1 80 8 112581551 112581811 AATACAAGAAGAGGGCACCA 59 112581490 112581509 CGTTGTCCTCATGAACTACC 58 NA Rattus norvegicus 81 Narfl ENSRNOG00000019522 ENSRNOT00000026518 1 1 1 80 10 15150193 15150212 TAGAAGCATCCAGACCTGAC 59 15150252 15150689 AGACTTCTCCTGTTGTAAGGAC 60 NA Rattus norvegicus 81 Kcna5 ENSRNOG00000019719 ENSRNOT00000026691 3 1 1 60 4 159077453 159077474 CTTCTATCATCGGGAGACAGAC 60 159077414 159077434 GTTGCCTTGTTCTTCCTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbn2 ENSRNOG00000043219 ENSRNOT00000066548 3 1 1 80 18 53130204 53130222 ACATGATCGGAACCTACCA 58 53129722 53130161 CATCGATATCTGAACAGCCC 58 NA Rattus norvegicus 81 Ubxn1 ENSRNOG00000019666 ENSRNOT00000026651 1 1 1 80 1 225068514 225068533 TCTAGAGACTCCTCTCAGCC 60 225068576 225068696 GCAGACCCAGATCCTTCAG 60 NA Rattus norvegicus 81 Gcsh ENSRNOG00000011535 ENSRNOT00000015967 1 1 1 83 19 49529084 49529102 CACAGAGAAGCACGAATGG 59 49527360 49529037 TCTCCCAAAGCTTCCTGTG 60 NA Rattus norvegicus 81 Prpf6 ENSRNOG00000051498 ENSRNOT00000083423 3 1 1 80 3 177158177 177158196 GCAGGGCTGAAGAATATTGC 60 177158238 177159744 TTCAGACCACAGGATACCAG 59 NA Rattus norvegicus 81 Stfa3l1 ENSRNOG00000030984 ENSRNOT00000049463 3 1 1 92 11 67551149 67551168 CTGTTACCTCTAGCATTCCC 58 67544718 67551095 ATGGTTTGACCAGGTAACAG 58 NA Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 1 2 2 64 1 81376270 81376289 AGATGATGAAGACCTTTCCC 57 81381492 81381510 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1559534 ENSRNOG00000001512 ENSRNOT00000002064 3 1 1 60 10 44658995 44659018 GTTCATAGCTAGTACAGGTATCCA 59 44658958 44658977 CCACTTAGGTTTGGTCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad51c ENSRNOG00000006661 ENSRNOT00000008846 2 1 1 81 10 74698604 74702358 CATTTCAGATCACACCTCAGG 59 74698543 74698564 CGGAAGTTCAAAGAACTTTCTG 58 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 2 2 2 80 1 72655753 72655771 ACTCTGTGCCTCTCATCTG 59 72655812 72655914 CATCTAGATCGGACTTGTTCCT 60 NA Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 1 2 2 82 12 19434587 19434605 TTAGTGGGTCACTCGAGTG 59 19433821 19434541 TGGTCAGTCACATTCCCAG 59 NA Rattus norvegicus 81 Olr1332 ENSRNOG00000058207 ENSRNOT00000080493 1 1 1 87 8 43816101 43816119 TATGTCTTTGCCTTGCTGG 58 43803763 43816050 CCAGGAAGAAGTACATGGG 57 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 2 2 2 80 3 148667828 148667947 TATGTTCACCTCATTGCTGAC 59 148667989 148668007 CTTGTCATCACTGTCACGG 59 NA Rattus norvegicus 81 Rn5-8s ENSRNOG00000059852 ENSRNOT00000085643 2 1 1 60 14 46646200 46646218 GATGAAGAACGCAGCTAGC 59 46646240 46646260 GTCGATGATCAATGTGTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551,ENSRNOT00000066879 2 2 4 81 2 78263542 78265211 AGGAAGACGACGAAGATTGG 60 78265255 78265273 GCATCCTCTTCCTCCACTC 60 NA Rattus norvegicus 81 Atp6v1b1 ENSRNOG00000013573 ENSRNOT00000018303 3 1 1 80 4 115432990 115433161 CTATGCCTAATGACGATATTACCC 59 115433197 115433218 GTCTGTCCACATAAATCTGTCC 59 NA Rattus norvegicus 81 Snx29 ENSRNOG00000002294 ENSRNOT00000003150 1 1 1 80 10 3930960 3930979 CTGATCAATGTCTGGATCCC 58 3883967 3930919 GCGAATGTAGACCTGATACAC 59 NA Rattus norvegicus 81 Kcnj8 ENSRNOG00000013463 ENSRNOT00000018057 3 1 1 80 4 176787796 176787816 TTACATGGAGAAAGGCATCAC 58 176784299 176787755 GCAGAAGTGAATGACCTGAC 59 NA Rattus norvegicus 81 Armt1 ENSRNOG00000019489 ENSRNOT00000026367 1 1 1 83 1 40989693 41001412 ATGCAGAGTCCACCAATCC 60 41001459 41001477 ATTGATGGAGTCCTGCGAC 60 NA Rattus norvegicus 81 Armt1 ENSRNOG00000019489 ENSRNOT00000026367 3 1 1 87 1 40989689 41001408 CATCATGCAGAGTCCACCA 60 41001459 41001477 ATTGATGGAGTCCTGCGAC 60 NA Rattus norvegicus 81 Vsig2 ENSRNOG00000033490 ENSRNOT00000042679 3 1 1 80 8 40012919 40012937 TACCTACCGATGTGTAGCC 58 40012980 40013112 CCTTCAGATGAGTCAGTCAC 58 NA Rattus norvegicus 81 Col18a1 ENSRNOG00000001229 ENSRNOT00000045315 1 1 1 80 20 12289501 12297311 AGTTCCAGGGAATGATCTCAG 59 12297352 12297371 CATCTTCTTCATCCAGGCAG 59 NA Rattus norvegicus 81 Saysd1 ENSRNOG00000006341 ENSRNOT00000008391 3 1 1 130 15 4658401 4658419 CTTGAGGTGGAAAGCAAGC 60 4663396 4663415 TGTTTGTCAGGAAAGACTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 3 3 3 80 8 71046690 71048847 AAAGCAAGGATGGTTTGACC 59 71046629 71046648 GGTCTTCCATGATGAAGGCT 60 NA Rattus norvegicus 81 LOC100910318 ENSRNOG00000049062 ENSRNOT00000073738 2 1 1 76 10 35040087 35040109 CCGGGAACCTACAATTTAATCAC 60 35036841 35036861 ACAAAGTAGAAGCTTCCAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dynlrb2 ENSRNOG00000012450 ENSRNOT00000016713 3 1 1 84 19 49019900 49019918 AGAAGTGGAGGAAACCCTC 59 49019966 49027294 GATTGGAATGCCTTCTGCA 59 NA Rattus norvegicus 81 Kcnk5 ENSRNOG00000047005 ENSRNOT00000075153 2 1 1 80 15 4590331 4590351 ACTTTCAACAACTGGAACTGG 59 4590392 4591308 AGCCACATTACCATAACCGA 59 NA Rattus norvegicus 81 Pdx1 ENSRNOG00000046458 ENSRNOT00000071942 1 1 1 72 12 9500736 9500754 AAATCCACCAAAGCTCACG 59 9496886 9496904 TATTCTCCTCCGGTTCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Plekha4 ENSRNOG00000020942 ENSRNOT00000028423 1 1 1 80 1 101522455 101522475 ACACATTGGAAGACCTGAGAG 60 101522516 101525516 TCGGTAGTCCACAATCTTCC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389,ENSRNOT00000086635 1 2 2 80 5 102434482 102528795 AGGATACATCCTTCAGGACG 59 102434421 102434441 AGGGTGATGATTTCCTCTTCC 60 NA Rattus norvegicus 81 Fut1 ENSRNOG00000020995 ENSRNOT00000028494 3 1 1 106 1 101599488 101600206 GAAGCTCAGCTATGTGGAC 58 101600276 101600294 GTTTCCTCCATTCAGGTGG 58 NA InUTR Rattus norvegicus 81 Gna13 ENSRNOG00000036745 ENSRNOT00000055062 2 1 1 80 10 97676072 97679443 GGAGTACCGGACTACATTCC 59 97679483 97679504 AAAGTCATACTCATGGATGCCT 60 NA Rattus norvegicus 81 Med4 ENSRNOG00000017170 ENSRNOT00000023195 3 1 1 81 15 55413932 55415460 GACTTGGGTTCCAGGAGAC 60 55415504 55415523 ATTGTTCATCTGACCCAGCA 60 NA Rattus norvegicus 81 Uba52 ENSRNOG00000019974 ENSRNOT00000027073 3 1 1 80 16 20670002 20670020 GCAGAGACTGATCTTTGCT 58 20670064 20670872 AAGGTGGACTCTTTCTGGA 58 NA Rattus norvegicus 81 LOC500354 ENSRNOG00000027979 ENSRNOT00000032568 3 1 1 60 4 170820742 170820762 CACCATGAAGACTCAGATCCT 59 170820782 170820802 GAAGTCCTTAATGCAGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 1 2 2 80 3 93642686 93642706 AATAAGTCAGAGCAAGATGGG 58 93642746 93645856 CATCAGCATCTGAAAGATGTG 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 1 2 2 80 7 24070384 24072226 ATTCCTGTAGTTCAGCTCCTC 59 24070324 24070344 TTCTGAATAGTTCTCCTCGCC 60 NA Rattus norvegicus 81 LOC102552659 ENSRNOG00000049238 ENSRNOT00000071765 1 1 1 80 10 84841590 84841613 GAATCCTAATCAAACGAAGGAGAC 60 84841650 84841758 GCTCCACTAACTCAGTTTCCT 60 NA Rattus norvegicus 81 Sec11a ENSRNOG00000011029 ENSRNOT00000015218 1 1 1 80 1 142740017 142740036 CGAGGCCTCTATAAACAAGG 58 142734268 142739975 AATGTACGGAACAAACCCTC 58 NA Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000034987,ENSRNOT00000082688 1 2 2 80 15 87761958 87761976 TCTTCACCCTCCACTACCT 59 87762019 87764198 TGCATCTGCCTATGACTCTG 60 NA Rattus norvegicus 81 Sgms2 ENSRNOG00000011284 ENSRNOT00000015020 2 1 1 80 2 236472547 236477614 CTGAGATACAAGTCAATAGTGGGA 60 236472490 236472514 GTACATAGTTATACAGCGATACAGG 59 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 1 2 2 80 4 87243332 87243353 TGCTTATTGAACAAGGCATACC 59 87241045 87243294 CATATCCTTCCTTGAGCATGAC 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 1 5 7 80 15 5509801 5509820 AGCTAGTTCAGAAGGAGAGG 58 5508990 5509760 GAATAAACCAAGACAGGAGGC 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 1 2 3 82 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069048 ATCTCCGCAATCTCATTCC 57 NA Rattus norvegicus 81 Psma2 ENSRNOG00000049920 ENSRNOT00000073834 2 1 1 80 17 53097550 53099480 ATGGGTCCAGATTACAGAGTC 59 53097490 53097511 AATGGGTTCTTGGTAAACAAGG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494,ENSRNOT00000080824 1 2 2 80 7 31818605 31819397 CATACTTGGTGAGGAGAACAC 59 31818545 31818563 TCAGCAAAGAACTCAGCAC 58 NA Rattus norvegicus 81 Pla2g4f ENSRNOG00000008135 ENSRNOT00000010959 3 1 1 80 3 112077881 112077902 CAACAAGACTTATGAACCTGGA 58 112077434 112077658 GGTCTAAGTCCTCAGACCTC 59 NA Rattus norvegicus 81 Ddx42 ENSRNOG00000009474 ENSRNOT00000013046 2 1 1 80 10 94436721 94436741 ATTATGAAGCCTACAAGCCCT 59 94436781 94437356 TATACTGGGACTGGAAAGCTG 59 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477,ENSRNOT00000066495 1 2 2 80 2 116059888 116064853 AGCACCAGCTTCATATTCTC 58 116064896 116064914 TTAGGAGGTGGTGAATGGA 58 NA Rattus norvegicus 81 LOC100911985 ENSRNOG00000045672 ENSRNOT00000075478 3 1 1 60 4 1509212 1509236 TTACCACTCCTACCATCTTTATCTC 60 1509254 1509272 CTGATGTGGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arf1 ENSRNOG00000060229 ENSRNOT00000080028 1 1 1 91 10 45564484 45564502 ATATCAGCTTCACCGTGTG 58 45564225 45564429 GAAGATCAAGCCTTGGGTG 59 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 3 2 3 117 17 53963269 53965584 AATTACCAGGTAAACAGGTGAG 58 53966400 53966421 CTGGCATTATGCAACATTTCAG 59 NA Rattus norvegicus 81 Olr807 ENSRNOG00000032535 ENSRNOT00000048423 1 1 1 60 4 72240566 72240589 CCTTTCTTCCTAGTTCTCTTATCC 58 72240604 72240626 ACTGTATCTTTAGGATGGTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2f2 ENSRNOG00000029316 ENSRNOT00000044254 1 1 1 80 15 57956344 57956363 CAGCCTTTGAGAAACATCAG 57 57942749 57956303 TTTCTTTCAGGTATCCCACAG 58 NA Rattus norvegicus 81 Diaph1 ENSRNOG00000019688 ENSRNOT00000060432 2 1 1 80 18 30985765 30986082 TGATCCAGAACCTCATTAAGCA 60 30985706 30985727 GATCATCGTACTCCTCCTTCAG 60 NA Rattus norvegicus 81 Tacc3 ENSRNOG00000017259 ENSRNOT00000032972 3 1 1 80 14 82338566 82338586 ATGGAGAAGTCCTTCTCTGAC 59 82336987 82338527 ATCTTCATTCTTCTGGTAGCCT 59 NA Rattus norvegicus 81 Ccdc122 ENSRNOG00000042404 ENSRNOT00000030097 2 1 1 80 15 59234143 59249773 TCTTCCAGTTGCAGATGGA 59 59249816 59249835 GCCTGTCTGTTTCTTTAGCT 58 NA Rattus norvegicus 81 Litaf ENSRNOG00000002520 ENSRNOT00000003412 3 1 1 66 10 4753726 4753744 CCTTCGTACTACACCCAGC 60 4757748 4757766 CATAAACCGTCTGCACTGC 60 NA DesignNoJunction Rattus norvegicus 81 Ppic ENSRNOG00000017416 ENSRNOT00000023485 1 1 1 80 18 48376465 48376483 TTCATCACCTTGACCAAGC 58 48372794 48376421 TACCACAGTCATCCCATCC 59 NA Rattus norvegicus 81 Slc37a1 ENSRNOG00000001169 ENSRNOT00000001544 3 1 1 80 20 10075490 10075508 GATCTCTGACCGTCTGGAG 59 10075552 10076414 GAGAACACATAGAGCGTGG 58 NA Rattus norvegicus 81 Olr16 ENSRNOG00000055974 ENSRNOT00000086084 3 1 1 60 1 149675328 149675349 TGTACCTAGCAGTCATAATGAG 57 149675289 149675310 TTCAGATCCAGAGTGATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clspn ENSRNOG00000011332 ENSRNOT00000015227 2 1 1 80 5 144607153 144609691 TGAAACGGCAAATGAGACTG 59 144609734 144609752 ACTCGTCTTCACTTCCCAC 59 NA Rattus norvegicus 81 Rpl37a ENSRNOG00000023385 ENSRNOT00000030761 1 1 1 89 9 80003822 80003840 CAAGATGAAGAGACGAGCC 58 80003891 80004888 GAAGTGGTATTGTAGGTCCAG 58 NA Rattus norvegicus 81 LOC100912293 ENSRNOG00000046855 ENSRNOT00000073828 1 1 1 80 7 186299 186319 GAAGTGTAAATTCGAGAGGCA 59 184871 186257 ACATCCAGACTGTAGTCCC 58 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 2 2 2 85 3 112371000 112371021 CCTACCACCTCTGATAATAGGA 58 112370311 112370957 ATTCATCAGGTAGAACAGTCAG 58 NA Rattus norvegicus 81 Slc41a1 ENSRNOG00000042320 ENSRNOT00000063882 1 1 1 80 13 48618880 48618898 GCCAACATCGGACAAATGG 60 48618942 48619564 GGCCTGTACCTGGATAAGG 59 NA Rattus norvegicus 81 Acer1 ENSRNOG00000047368 ENSRNOT00000075180 2 1 1 80 9 10087492 10087597 CATGGTCATAGGTCTGTTCTC 58 10087638 10087657 AGGATGGAGATCTCATCCAG 58 NA Rattus norvegicus 81 Isoc1 ENSRNOG00000019711 ENSRNOT00000026706 2 1 1 81 18 53738469 53740927 TGCTGTTTGGAGTAGAAACAC 59 53740969 53740988 ACGATGTGGACCTCAATACC 60 NA Rattus norvegicus 81 Gli1 ENSRNOG00000025120 ENSRNOT00000009803 3 1 1 80 7 70629917 70629936 TCAATAGCTATGGTGAGCCA 59 70629627 70629875 CAGAAAGTCCTTCTGTTCCC 58 NA Rattus norvegicus 81 Inppl1 ENSRNOG00000019730 ENSRNOT00000066915 3 1 1 80 1 166904102 166904123 TGAGGTTCACTCATCTCTTCTG 60 166903938 166904065 TAATGTAGTTCAGGATCTCCTGG 59 NA Rattus norvegicus 81 Uri1 ENSRNOG00000014463 ENSRNOT00000019463 1 1 1 80 1 94368541 94381967 CAGCATTGGGAGAAAGTAGAC 59 94368481 94368501 GTCGTAAGACAACTTGTCAGG 59 NA Rattus norvegicus 81 LOC685351 ENSRNOG00000038499 ENSRNOT00000058683 3 1 1 84 13 84753536 84753555 TGATCAACAGACAGATGGAG 57 84751050 84753489 TCAAGAATTCTGTGCTGGG 58 NA Rattus norvegicus 81 Reep3 ENSRNOG00000000645 ENSRNOT00000067920 3 1 1 81 20 22985999 22986017 GGGACACAGACCTTACCAG 59 22986062 22993727 CGGAATTCCATAGGCTGGT 60 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 2 2 2 80 18 40096770 40100831 AAGAAACAGAGTGCAATGGAG 59 40096710 40096731 TGTCTTCCAGGATTTCAAAGAG 58 NA Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 2 1 1 70 19 44232027 44234571 GAGCCACAGAACAAGAGGA 59 44234605 44234623 CCATTCTCCTTGGTCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Ino80 ENSRNOG00000014483 ENSRNOT00000031672 2 1 1 80 3 111196078 111196099 TCAAACCAGATACCTTGAAACC 59 111195425 111196038 GCAGTCTCAGTTTCTTCTCC 58 NA Rattus norvegicus 81 Zwint ENSRNOG00000048682 ENSRNOT00000074404 1 1 1 81 20 17090532 17090550 CTGGAACCTGTAGGATTGC 58 17090329 17090488 CTTTCTTCCGAGAGTTCCTC 58 NA Rattus norvegicus 81 Olr131 ENSRNOG00000048465 ENSRNOT00000042637 2 1 1 60 1 169050457 169050475 GTTCCCATACTGCCATTCC 58 169050415 169050433 CATGACATCTTGGTGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 1 2 2 90 6 107607363 107607381 TAGAGAAGATGGACGCGTC 59 107609343 107609799 GAAAGCTTCCCTCATGATTGAC 60 NA InUTR Rattus norvegicus 81 Ankrd29 ENSRNOG00000011856 ENSRNOT00000067690 1 1 1 80 14 109547699 109551947 CAACTTTATGATGGAGCCACTG 60 109551988 109552006 TGAAGACAGCAGAAGTCGG 60 NA Rattus norvegicus 81 Prkag1 ENSRNOG00000061499 ENSRNOT00000083354 1 1 1 80 7 140492407 140501723 GAGAATGAACACTCTCAAGAGAC 59 140492349 140492367 GTCATAGCAGCGATGAGAC 58 NA Rattus norvegicus 81 Prkag1 ENSRNOG00000061499 ENSRNOT00000083354 3 1 1 80 7 140492346 140492364 TCATCGCTGCTATGACCTG 60 140492136 140492304 AAGAAGGCTTTCTTTACCTGC 59 NA Rattus norvegicus 81 Bfar ENSRNOG00000003151 ENSRNOT00000004217 2 1 1 80 10 1487870 1491901 GAATACAAGGCTGTCAACCC 59 1491942 1491962 GTATAGCAAGCCAAGTCTTGG 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394,ENSRNOT00000037276 1 2 2 80 8 97561289 97561307 GATGTGAACCATCAGTGCC 59 97561348 97561925 CAGAGTGTAGCAGACATTATCC 59 NA Rattus norvegicus 81 Olr399 ENSRNOG00000030855 ENSRNOT00000046196 3 1 1 60 3 16039693 16039711 TTATCTTCAGCCAATGCCC 58 16039733 16039753 TTCTAAAGTGAGATAGGCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1412.3 ENSRNOG00000059206 ENSRNOT00000090076 3 1 1 116 7 143369844 143370410 TTCATCAACAAGGTTGCGC 60 143369746 143369764 TCATAAACAGGCTCCAGGC 60 NA Rattus norvegicus 81 Nuggc ENSRNOG00000018238 ENSRNOT00000024527 2 1 1 80 15 49033450 49038102 GAAATTGAAGAGGAAACTGCCA 60 49038143 49038161 TACTCATGGGCACTGACTG 59 NA Rattus norvegicus 81 Isyna1 ENSRNOG00000019741 ENSRNOT00000026821 3 1 1 81 16 20590684 20590702 ACTTCAAGTCAGGGCAGAC 60 20590534 20590640 ACGATGGACATGGTCTTGAG 60 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000029723 3 1 2 123 13 96304073 96335197 GAGTACAGAGGCAATAGTGG 58 96379674 96379693 AAATCGAATGTACCCAGTGG 58 NA Rattus norvegicus 81 AABR07030122.1 ENSRNOG00000030217 ENSRNOT00000049614 2 1 1 60 10 68588886 68588906 TTTATGCCCGAGATGAAACTG 59 68588926 68588946 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359546 ENSRNOG00000029847 ENSRNOT00000041537 3 1 1 60 3 104675358 104675376 GAGCCACAGAGAAGATCTG 57 104675316 104675336 CCTTCTTAGGCTTTGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk15 ENSRNOG00000033805 ENSRNOT00000038353 3 1 1 80 1 100194510 100194631 GTCACAAGTCACAAGTGAGAC 59 100194673 100194691 CCTTGTTGCAAGATGCCTC 60 NA Rattus norvegicus 81 Nkain3 ENSRNOG00000013085 ENSRNOT00000017479 1 1 1 80 5 34499688 34644575 TGCATGTATCTTTCAGCTTTGG 60 34499629 34499650 CAGGAAATTTCCAAGAATGGGT 59 NA Rattus norvegicus 81 Otud6b ENSRNOG00000006636 ENSRNOT00000008725 2 1 1 80 5 28340921 28340939 CCATTCAGACGACTTCCTG 58 28338963 28340880 CAGTACTTTCCAAACTCTTCTG 57 NA Rattus norvegicus 81 AABR07051730.1 ENSRNOG00000054128 ENSRNOT00000058331 1 1 1 60 3 20304050 20304069 AGCAAGTCAGGGTATTAGCA 59 20304090 20304110 AATCGTTCCATCTGGTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195,ENSRNOT00000088917 1 2 3 80 6 106127622 106127640 GGATATTGGTGGCAGTGGA 60 106127684 106129408 CATGTAGGCTCCATCTGGT 59 NA Rattus norvegicus 81 Rn60_X_0651.3 ENSRNOG00000051090 ENSRNOT00000076515 2 1 1 60 X 64160656 64160676 CAGTATCACCACAACCATGAG 59 64160696 64160716 AGTGTTGGTATCACAGAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044935.1 ENSRNOG00000059663 ENSRNOT00000084720 2 1 1 80 20 27197954 27198549 AACAGACAACTCAACAGCAC 59 27197893 27197914 TTCGATCAGCTTAGTGTTTGAC 59 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527,ENSRNOT00000085042 1 2 2 80 3 8911083 8911465 GATGAGGTAGACAAGGCTG 57 8911021 8911040 CAGGAGACGAGTAACTTCTG 58 NA Rattus norvegicus 81 Pnpo ENSRNOG00000046493 ENSRNOT00000073746 3 1 1 94 10 84876842 84876860 AACTACTTCCATTCCCGGC 60 84876457 84876785 TTCTTTCTCAGGTACTCCCG 59 NA Rattus norvegicus 81 AABR07030798.1 ENSRNOG00000045888 ENSRNOT00000075706 1 1 1 89 10 104935493 104935511 CAGATCCTCACCAGCTGAC 60 104935564 104935820 CTGCTCAGAAGAGACCGAG 60 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000029537 ENSRNOT00000041318 1 1 1 80 10 60352569 60405709 GTTCTGTGAGGACAATATAATCCC 59 60352512 60352533 ATATAAATGTCAGAGCAGGCCA 60 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 2 2 2 80 5 139711371 139711391 TTCCGAGTACAAGAACTACCA 59 139708846 139711331 TTCTGCACTGATCATCTTCAC 59 NA Rattus norvegicus 81 Snapin ENSRNOG00000013356 ENSRNOT00000018830 2 1 1 81 2 189879352 189879925 ACAGAATGCACAGGAACGA 60 189879289 189879307 TGAATCCAGCATGGCTCTC 60 NA Rattus norvegicus 81 LOC684171 ENSRNOG00000050377 ENSRNOT00000072109 3 1 1 60 1 167811584 167811603 CTGGGATTTCTCTACACGCT 60 167811624 167811644 CCTTGACAACTGCTAGAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fxyd1 ENSRNOG00000021079 ENSRNOT00000028624 1 1 1 80 1 89485988 89486437 AGATCCATTCACCTACGATTACC 60 89485930 89485949 AGGATGCCCAAGATGAAGAG 60 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857,ENSRNOT00000065893 1 3 3 98 12 52360966 52361846 GACATTCCAACACTTCAAACTC 58 52362004 52362022 TCCGGTATGGATCAGACAC 59 NA Rattus norvegicus 81 Tfrc ENSRNOG00000001766 ENSRNOT00000002407 1 1 1 80 11 71413708 71414778 CAGCATTCTCTAACTTGTTTGG 58 71413649 71413669 TGTTATCTCCATCTACTTGCC 57 NA Rattus norvegicus 81 Olr791 ENSRNOG00000045900 ENSRNOT00000074196 2 1 1 60 3 103447314 103447332 CCTCTCCATTACCTGACCA 58 103447272 103447293 AGGCAATCACTACAAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC128618.1 ENSRNOG00000055221 ENSRNOT00000080859 1 1 1 72 6 107489659 107489677 AGAAGCCGTGAACTACCTG 59 107492191 107492209 TTTGGAAATCCCAAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Actg2 ENSRNOG00000029401 ENSRNOT00000042699 2 1 1 80 4 115218321 115221479 CCTTCCTTCATTGGCATGG 59 115218259 115218277 GCGGATGTCAATGTCACAC 60 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504,ENSRNOT00000064252 1 2 2 106 8 115153158 115153518 GTGTGAAGACTCCGACTCTC 60 115153587 115153605 TTCCATGACCAGCACTCTG 60 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190,ENSRNOT00000077730 2 2 2 80 7 73284651 73285356 TTGTTGGGAGGGATATCGT 58 73285400 73285418 ATTTACTCTCGGGTCCCTG 59 NA Rattus norvegicus 81 RGD1565775 ENSRNOG00000020139 ENSRNOT00000027385 1 1 1 80 2 188055469 188055493 GAAGTAGAAATCAATGACGTACCTC 60 188055531 188056188 AAGCCGACTGATCTCATCC 59 NA Rattus norvegicus 81 RGD1565775 ENSRNOG00000020139 ENSRNOT00000027385 2 1 1 80 2 188064350 188064599 CATTACCAGGCTATACACAACC 59 188064639 188064658 ACTGATAGCCATTGGATGGA 59 NA Rattus norvegicus 81 Wdr34 ENSRNOG00000015636 ENSRNOT00000021132 3 1 1 82 3 8599776 8599794 AAGTACCTGTTTGCTGTGC 59 8599570 8599732 AACAGTTGTACATCACCTTCC 58 NA Rattus norvegicus 81 Rfxank ENSRNOG00000033318 ENSRNOT00000041221 3 1 1 85 16 21034196 21034214 CTTGAAGCACTCCACAACC 59 21034263 21034872 GGATAGACAGGGAGTCCAG 58 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 3 2 2 80 18 61703157 61703259 CTGATGGCTTAGCAATTTGG 58 61703096 61703115 CACCATTCCACATATCAGCT 58 NA Rattus norvegicus 81 LOC102554255 ENSRNOG00000050376 ENSRNOT00000050154 3 1 1 60 4 88232712 88232733 TTTGCTTTGTGGTCATGTACTG 60 88232749 88232772 CATAACAGGATTGAGGTGAATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000076120,ENSRNOT00000003689 3 3 5 60 13 78760331 78760349 GCCTTGGAAGATGGTTCTG 59 78760369 78760391 GTCTTTGTACCACAAAGAGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000075846,ENSRNOT00000002030 2 2 3 80 12 25514972 25516908 GTGACAGTCCCAGATAATGAG 58 25514912 25514931 GAGGTCGTTCACTTGTTCTC 59 NA Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000084243 1 1 2 98 16 21132426 21136897 CACTTAGAGAAGGCGGTCC 60 21136957 21136977 GTTATAGCTCACGGATCTGCT 60 NA InUTR Rattus norvegicus 81 Fbxo5 ENSRNOG00000024077 ENSRNOT00000029416 2 1 1 80 1 42462421 42462440 AATGTTCAACCCAGTCAACG 59 42462039 42462378 CAATGTCTTTGCCACCTCC 59 NA Rattus norvegicus 81 Hist1h2ak ENSRNOG00000052594 ENSRNOT00000080119 3 1 1 160 17 44841142 44841161 CAAGAAGACGCGTATCATCC 59 44841001 44841019 TAGCTTTGTGGTGGCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edem1 ENSRNOG00000055365 ENSRNOT00000088273 2 1 1 80 4 140899882 140899903 GTCAAGTTAGTGATCAACACCG 60 140899944 140901085 TCCCAGAACCCTTATCGTG 59 NA Rattus norvegicus 81 LOC102552549 ENSRNOG00000050874 ENSRNOT00000071495 1 1 1 125 10 84847288 84847419 GAGTACTGTAAACCCTGCG 58 84846841 84846859 GATCTCAATCTCGAAGGCC 58 NA Rattus norvegicus 81 LOC691418 ENSRNOG00000025980 ENSRNOT00000030754 1 1 1 60 3 110983004 110983026 CTTTCTTCTCCTTCAAAGTGGAC 60 110983041 110983064 AGTATCTGTAGAACTTCTTCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chp1 ENSRNOG00000004742 ENSRNOT00000056405 2 1 1 80 3 111371572 111371590 AGGATTCCAGAACTTGCCA 59 111371632 111376174 GTTTACCTGATCCTCTCCCTC 59 NA Rattus norvegicus 81 Psmd4 ENSRNOG00000021042 ENSRNOT00000028589 2 1 1 80 2 196200356 196200376 CTGGTGAAACTAGCTAAACGC 60 196200138 196200314 TGTGTTCACCTCCTCTTCC 59 NA Rattus norvegicus 81 Samd10 ENSRNOG00000036719 ENSRNOT00000029386 3 1 1 199 3 177093758 177093776 ACTACCTCGTCTACGTCGA 60 177092901 177093076 GTTTCCGAAGGAAGCTTGG 59 NA Rattus norvegicus 81 Cep68 ENSRNOG00000027282 ENSRNOT00000039523 1 1 1 82 14 104512685 104512703 CAGATGTTGCTGACCTCAG 58 104510477 104512641 CTTAAATTGCCGGTAAAGCTG 58 NA Rattus norvegicus 81 Ajap1 ENSRNOG00000050137 ENSRNOT00000071459 1 1 1 81 5 170625358 170627758 ATGGAAACCGATCCTCCTC 59 170625295 170625314 CAGCAGGAGATTTCAAACCA 59 NA Rattus norvegicus 81 Syndig1l ENSRNOG00000027645 ENSRNOT00000031650 1 1 1 89 6 108395968 108395987 TCCATACTGTGTCCTATGGG 58 108394650 108394668 CACTCTCAGTCGAGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Psmb3 ENSRNOG00000052730 ENSRNOT00000086608 2 1 1 81 10 85650773 85651108 GTATGAGAAACGGTTTGGTCC 59 85651149 85651169 GCAAATGAAGGGCTTAAAGGT 60 NA Rattus norvegicus 81 LOC102555599 ENSRNOG00000050957 ENSRNOT00000071564 3 1 1 60 3 76114638 76114659 CTGGCTAACATCTTCAATATGG 57 76114599 76114618 AGAATTGGACCATACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr770 ENSRNOG00000047449 ENSRNOT00000075178 2 1 1 60 3 102841832 102841851 TTTCCTCAGTTACCACTCCA 58 102841873 102841892 GAAATGGTCTTGTGTTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps17 ENSRNOG00000019106 ENSRNOT00000025888 1 1 1 80 1 143168437 143168455 TCTCAGCCCTAGATCAGGA 59 143167427 143168393 AGAGACTGCCAAAGTCCAG 59 NA Rattus norvegicus 81 Olr781 ENSRNOG00000048229 ENSRNOT00000045743 3 1 1 60 3 103151640 103151658 TTCTCTGGTTCAACTGGCT 59 103151598 103151617 GTCCAACACATTTCGTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifc ENSRNOG00000022937 ENSRNOT00000037290 1 1 1 80 7 23894417 23895211 GTCTCCATGGACTTTGTTGC 60 23895249 23895272 GTTCAAAGATAAGGAGCAGATCAG 60 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171,ENSRNOT00000008759,ENSRNOT00000049771 3 3 3 80 15 11852181 11853781 AAGTTTGAGCCTACTGATCCA 59 11852121 11852141 TGCAATTAGTAAGGTCCACCA 60 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 3 3 3 80 X 104885005 104885542 ACAAATGAAGCTCTGTGTCC 59 104885585 104885603 AAAGCATAAGCCAGCTGTG 59 NA Rattus norvegicus 81 Npc1l1 ENSRNOG00000049955 ENSRNOT00000075827 1 1 1 80 14 86554754 86554772 AGTGGTACCTTTCCTGGTG 59 86554182 86554710 ATCCTAGGTAGCCTCTGGT 59 NA Rattus norvegicus 81 Cyp20a1 ENSRNOG00000017631 ENSRNOT00000023796 1 1 1 80 9 67169398 67169417 AGCTACACAAGGAGGTAGAC 59 67169460 67172683 GCTGGCAATATCTGAGCTG 59 NA Rattus norvegicus 81 Aldh1b1 ENSRNOG00000011497 ENSRNOT00000015281 1 1 1 123 5 61382367 61382385 CAGAATTTGAGCCTGAGCG 59 61385284 61385302 AATATGAGGTGGTCCTGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nup188 ENSRNOG00000025185 ENSRNOT00000030996 2 1 1 80 3 8902213 8902468 GCTTCGAGTAAGCGAAATCC 60 8902511 8902529 AGTGCAATCACCTCTTCCT 59 NA Rattus norvegicus 81 Chfr ENSRNOG00000037430 ENSRNOT00000056639 3 1 1 80 12 52581021 52581039 ACCAGACAAGATGGAGGAG 58 52580305 52580978 ATACAAGGCTGCAAACTCAC 59 NA Rattus norvegicus 81 Olr581 ENSRNOG00000046632 ENSRNOT00000049950 2 1 1 60 3 75810275 75810294 TTACCTCCTCATTATCCCGA 57 75810314 75810335 CACATCCTTATTCCGTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000012755 2 1 2 203 4 84659268 84659286 AAAGCTAAACCCACCTCCA 59 84670002 84673945 AGTGCCTTTAGAGATAACTGAG 57 NA DesignRelaxed Rattus norvegicus 81 Rpl19 ENSRNOG00000004741 ENSRNOT00000006359 3 1 1 80 10 85980929 85980947 ATGCGAAGGATGAGGATCC 59 85980989 85981315 GCTGTGATACATATGACGGTC 59 NA Rattus norvegicus 81 Casp4 ENSRNOG00000033697 ENSRNOT00000061973 3 1 1 80 8 2641846 2647692 TACTCTACAACACCACACCAC 60 2647732 2647752 GAAGCAGGAAATGAGTTTGGA 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 3 2 2 80 13 75203337 75203357 GACGGAAATCTTCGAGTACTG 59 75203396 75205261 TAAAGGAGCTTATACACCTGGA 59 NA Rattus norvegicus 81 B3gnt8 ENSRNOG00000020606 ENSRNOT00000027964 2 1 1 80 1 82420102 82420123 GCTGGAAAGATAACAGACTCTG 59 82420164 82420882 CTGGTGAGACTGGTTTGGA 59 NA InUTR Rattus norvegicus 81 Olr1245 ENSRNOG00000052884 ENSRNOT00000078277 3 1 1 60 4 1591468 1591490 GTGACTGAATTCATTCTACTGGG 59 1591510 1591528 GGAACAAGGGTAACTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cisd1 ENSRNOG00000000610 ENSRNOT00000000749 3 1 1 74 20 18501876 18501894 GATAAGGCCGTGTATTGCC 59 18506525 18506544 ATTGTGCTTTATGTGAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Cat ENSRNOG00000008364 ENSRNOT00000011230 2 1 1 80 3 93393939 93396372 GTTCCATTACAAGACTGACCA 58 93393879 93393897 TAATCCGGGTCTTCCTGTG 59 NA Rattus norvegicus 81 Ldha ENSRNOG00000013009 ENSRNOT00000017468 1 1 1 80 1 102904966 102905328 CAAACCCAGTGGATATCTTGAC 59 102905367 102905387 TGCAACCACTTCCAATAACTC 59 NA Rattus norvegicus 81 Cbfb ENSRNOG00000014647 ENSRNOT00000019656 2 1 1 80 19 37156827 37156848 AATTTGAGGATAGAGACAGGTC 57 37156889 37168981 TCTTCTTGCCAGTTACTGC 58 NA Rattus norvegicus 81 Olr566 ENSRNOG00000045792 ENSRNOT00000074642 2 1 1 60 3 76000216 76000238 GCTACAGTTACCTATTTGAGACC 59 76000257 76000276 AGAGCAGTTTGTCAGTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga6 ENSRNOG00000001518 ENSRNOT00000002075 3 1 1 80 3 58486741 58487774 GCCAACACAGGTTCTTGAG 59 58487817 58487836 TAGGAATTCCTGTCCAGGTC 59 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942 1 1 2 132 8 50530865 50531439 CTAGCTACTCCAGGTGCAC 60 50530632 50530650 ATGTAGCCCTGCATAGAGC 59 NA InUTR Rattus norvegicus 81 Mrgprx2l ENSRNOG00000022729 ENSRNOT00000030162 1 1 1 60 1 103810728 103810747 CCTAGTGTTGAGCCTTTCAG 58 103810687 103810705 AGAGATGTTAGTGCCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362226 ENSRNOG00000024412 ENSRNOT00000032589 3 1 1 65 3 2405333 2405351 TAGGAGCTGTGATCAACCG 59 2405376 2405398 CCTTCACAGAGATGATATACACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr139 ENSRNOG00000023863 ENSRNOT00000032796 3 1 1 83 1 188855293 188895129 GGTTACCAGCAAATATCTTGAC 58 188855231 188855251 CCAGAAGATAGTTGTAGGAGG 57 NA Rattus norvegicus 81 Abce1 ENSRNOG00000018345 ENSRNOT00000024753 3 1 1 80 19 31888836 31888854 TAATTGACGAGCCATCTGC 58 31888895 31889019 CATGGAGAATGAAACGTTTGAC 59 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492,ENSRNOT00000017885 3 2 2 80 1 193124940 193124958 ATTACTGCAGCATCCAGTG 58 193125001 193125765 AGATTTGGGTCCAGATTTGC 59 NA Rattus norvegicus 81 Rn60_5_1052.2 ENSRNOG00000051168 ENSRNOT00000076789 2 1 1 60 5 101119904 101119923 AAAGGAAGCAAAGTATGCAC 57 101119863 101119885 AGATTCTGGACTTGGTATAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r106 ENSRNOG00000031185 ENSRNOT00000044029 2 1 1 60 4 165787585 165787607 TTCTAGGGAATGGGTTTATCCTG 60 165787547 165787565 GAGAACTTCTGCCTGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl16 ENSRNOG00000049235 ENSRNOT00000071433 3 1 1 83 10 109637539 109638116 CGCTCTTGTTCATGATGGAC 59 109637475 109637493 CTTCTGCAGAAAGAAGGCC 59 NA Rattus norvegicus 81 Vom1r84 ENSRNOG00000059448 ENSRNOT00000082459 2 1 1 60 4 88207239 88207258 ACATGATCTCCTGTCAACTG 57 88207279 88207299 ATATCCCATCCAGTGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687119 ENSRNOG00000049778 ENSRNOT00000073565 2 1 1 60 1 173048506 173048525 AGTCTTGTGATTCCCATGCT 59 173048547 173048566 CCTTTACCTCCGTGTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx27 ENSRNOG00000008081 ENSRNOT00000010806 3 1 1 80 3 163779942 163780050 CAGATGAGGTGAAAGATCTGG 58 163780091 163780110 GAGCTACATCTGTGTTGCTG 59 NA Rattus norvegicus 81 Pgp ENSRNOG00000009536 ENSRNOT00000012720 3 1 1 177 10 13836675 13836694 TACATGAAGCTTACCAAGGC 58 13836926 13836944 TAGGCTTCCCGATGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 1 2 2 80 17 58127729 58146220 GATTGCCAGCTGGAATGTG 60 58127667 58127688 ATGATGCTATGGAGGTACACAG 60 NA Rattus norvegicus 81 Glra4 ENSRNOG00000002391 ENSRNOT00000052302 2 1 1 80 X 107432115 107432133 CTTGGTATCACCACTGTCC 58 107427704 107432073 CTTCACATAGGACACCTTAGG 58 NA Rattus norvegicus 81 Olr13 ENSRNOG00000052361 ENSRNOT00000088514 1 1 1 60 1 149786717 149786736 TACACAAGGAGTGGAGACAG 59 149786676 149786695 ACAGGAACTCAGGATAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam229a ENSRNOG00000042787 ENSRNOT00000064855 3 1 1 60 5 147693310 147693329 CTTTCCCTGCAGAAATCTCC 59 147693352 147693370 AGATGTCATTGGTGAACCC 57 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Atf6 ENSRNOG00000024632 ENSRNOT00000029202 1 1 1 80 13 89170760 89170783 ACCATTACTTTATATCCCTCCACC 60 89170139 89170723 CGAAGTTCATGGTTCAACCTG 60 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 1 2 2 95 20 7880383 7880403 CACATCTACAATGCCTACCTG 59 7880460 7880582 GATGAAGGGTGCGTTATGG 59 NA Rattus norvegicus 81 Mrpl13 ENSRNOG00000004401 ENSRNOT00000005815 3 1 1 86 7 95294735 95294753 CTACTTATGGCATGCTGCC 59 95293660 95294688 CTTCTGGAATATCCTCATCAGG 58 NA Rattus norvegicus 81 Fgd6 ENSRNOG00000054515 ENSRNOT00000077666 2 1 1 80 7 35056889 35058973 GCTGCAGAAACTAGATCACC 59 35059014 35059034 GAAGATAAGGCACTTGAAGGA 58 NA Rattus norvegicus 81 Akr1e2 ENSRNOG00000017165 ENSRNOT00000023133 1 1 1 80 17 69373306 69374853 AACTAACCAGATTGAATGCCAC 59 69374892 69374912 GTCACAGACACATTTCTTCCA 59 NA Rattus norvegicus 81 Mir6331 ENSRNOG00000049586 ENSRNOT00000071790 3 1 1 60 6 133878622 133878641 TTCTTTGTGCTTGGTTTGGG 60 133878661 133878682 TTTAACAGCAACAACAGACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000091981 3 2 4 100 20 2505245 2505263 ACTTCAGAAGTGCCTGGAG 59 2505325 2509752 CTACCAGTCTCTTGAGTTCCC 60 NA Rattus norvegicus 81 Rn60_7_1414.6 ENSRNOG00000057014 ENSRNOT00000084907 2 1 1 60 7 143511379 143511398 AGGTAGCATTGGAAGAACTG 58 143511338 143511361 GACTCTAGACCTATTAAAGACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0836.2 ENSRNOG00000051207 ENSRNOT00000076646 1 1 1 60 13 78674352 78674373 TACATGCGAATCTACAAGAAGG 58 78674394 78674412 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm2 ENSRNOG00000013171 ENSRNOT00000017607 3 1 1 87 8 115347191 115348932 TGATTATCGGGTGCAGACC 60 115347122 115347140 CAACTTGGGTGCAAAGAGG 59 NA Rattus norvegicus 81 Bpifa6 ENSRNOG00000043258 ENSRNOT00000065104 2 1 1 80 3 149471549 149471567 AAGGTCTTTGCCTCATCTG 57 149471610 149473808 GAGAAATGAGAGCATCCCTG 58 NA Rattus norvegicus 81 Rhox5 ENSRNOG00000046548 ENSRNOT00000071376 1 1 1 80 X 123913639 123913657 TAAGCAGTGGTTCCTCCAG 59 123914313 123916777 TAAACCAATTCCTGCACTCTG 59 NA Rattus norvegicus 81 Rhox5 ENSRNOG00000046548 ENSRNOT00000071376 3 1 1 80 X 123913638 123913656 CTAAGCAGTGGTTCCTCCA 59 123914313 123916776 AAACCAATTCCTGCACTCTG 59 NA Rattus norvegicus 81 Rpp14 ENSRNOG00000039829 ENSRNOT00000061123 2 1 1 80 15 18628341 18628361 AAATTGTGGAGCTCTTTGACC 59 18627144 18628299 AAAGGGAGACACCTGACTC 59 NA Rattus norvegicus 81 Rpp14 ENSRNOG00000039829 ENSRNOT00000061123 3 1 1 80 15 18628341 18628359 ATTGTGGAGCTCTTTGACC 58 18627142 18628297 AGAAAGGGAGACACCTGAC 59 NA Rattus norvegicus 81 RGD1310429 ENSRNOG00000000237 ENSRNOT00000000254 2 1 1 80 10 67746701 67748132 AGAGCTGAGAATTCCAGGT 58 67746639 67746657 GCTGCTATTTCAGGAAGCA 58 NA Rattus norvegicus 81 Mgme1 ENSRNOG00000028196 ENSRNOT00000038865 2 1 1 61 3 138405226 138405244 GTGCTGTGAACCATGATGC 60 138405618 138405636 GGCCACCACAATTAATCCA 58 NA DesignNoJunction Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000059386,ENSRNOT00000077748 1 2 2 80 8 50597400 50597419 CTGGGATCTTCCAAGACTGG 60 50596394 50597357 GATCTTCAAATGGCGCCAG 60 NA Rattus norvegicus 81 Slc46a1 ENSRNOG00000010291 ENSRNOT00000013698 3 1 1 82 10 65735826 65737446 CTCATGTTCACAGGGTACG 58 65737492 65737510 CTCACTAGCTTGGAGAGCT 59 NA Rattus norvegicus 81 Rpl36 ENSRNOG00000033473 ENSRNOT00000043704 3 1 1 60 9 10441345 10441447 CAAGTTTATCAAGAAGAGGGTGG 60 10441307 10441325 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 2 2 2 80 18 56840134 56840156 CATACTCTTTCCAAGAAGACCAC 59 56839389 56840094 CTTGTCTTCTGTCCTGGGT 59 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 1 2 2 80 19 38602054 38607143 TTCTGTCCAGACTGGAAGAC 59 38607185 38607204 TGCACTGTGGGATACTTCAG 60 NA Rattus norvegicus 81 Ell3 ENSRNOG00000022868 ENSRNOT00000036823 3 1 1 80 3 113403102 113404332 TGGACAAGAAACGTTCAGC 59 113403040 113403058 GACTTGAGGCTAGAGGCAG 60 NA Rattus norvegicus 81 Usp37 ENSRNOG00000022720 ENSRNOT00000032719 3 1 1 80 9 81748958 81748976 AAAGTGTTCACTTGCCCTG 59 81746212 81748917 AGTTTCTCCACATGCTTTACAG 59 NA Rattus norvegicus 81 Rnls ENSRNOG00000020705 ENSRNOT00000028098 3 1 1 80 1 252086932 252086951 TTGACCTTGTCATCCTTACC 57 251902148 252086892 GGCGTTCACTAATTAAGTTCAC 58 NA Rattus norvegicus 81 AABR07073181.1 ENSRNOG00000021437 ENSRNOT00000039341 2 1 1 80 5 155861457 155861475 CTCTTCCTTCCACAACCTC 58 155861519 155861644 TAGGATGTCACCTTGTCCC 58 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288,ENSRNOT00000092075 2 2 2 80 20 27995744 27997392 GTCATAGAAGGTGACGTGGT 60 27997432 27997453 TTTGGTATTGCAAGTGGAACAG 60 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 2 2 2 80 11 72314288 72314306 GGAGAAGAGCCTGTCAGAG 59 72274511 72314244 GCTTCTGTGGGCTTTATGG 59 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000009158,ENSRNOT00000044161 2 2 2 80 13 112078081 112079567 TCAGACACCCTTGGATTGAC 60 112078020 112078040 AGTTCTTCTGAATCTGGAGGC 60 NA Rattus norvegicus 81 3281a3 ENSRNOG00000056415 ENSRNOT00000085617 1 1 1 71 20 2297210 2297228 GGGAGGAGCAAAGATTCCA 59 2297157 2297175 TACACCATCTCAGGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912616 ENSRNOG00000002497 ENSRNOT00000003376 2 1 1 67 10 70999823 70999844 TGGGAATGAACATAACCTATGC 59 71000489 71000507 TTTGGGACACATTCCAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Casc1 ENSRNOG00000027630 ENSRNOT00000030680 1 1 1 80 4 179463522 179463542 ATTAGCTTGTGGGAGGAAGAG 60 179461399 179463481 TTCAATCAGGGACAGAACCA 59 NA Rattus norvegicus 81 Rfpl4a ENSRNOG00000015743 ENSRNOT00000021077 1 1 1 95 1 72280368 72281629 ACTAAATGAGGCACTGACCA 59 72281687 72281705 CAGTTCAGGTACACAGGGT 59 NA InUTR Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 2 2 4 86 13 79042700 79042722 CTGGACGTGAATCAATCTATCAG 59 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 RGD1560069 ENSRNOG00000038041 ENSRNOT00000057891 2 1 1 60 15 82581895 82581913 GGCAAATTCAAGAGACCCA 58 82581853 82581872 TGCATCCAGAGTATTGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc2 ENSRNOG00000004474 ENSRNOT00000006223 1 1 1 80 6 91595968 91598995 GCTACAAGAGTAATCAAGTGAGAG 59 91599030 91599052 CAGTCTCCATATTGTAGATCCAC 58 NA Rattus norvegicus 81 Ccdc3 ENSRNOG00000017933 ENSRNOT00000024110 3 1 1 135 17 76995308 77089827 AAGACAACAGGCTCATGTG 58 76995191 76995209 TTGACCTTCTTGACTCGCT 59 NA Rattus norvegicus 81 Gng2 ENSRNOG00000048980 ENSRNOT00000071133 2 1 1 67 15 4850169 4850187 ACATGCCAAGGAAGATCCC 60 4850218 4850236 ACTTCTTCTCCCGAAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 1 2 4 95 X 71971512 71972296 ACTGTGATACACAGGTCCA 58 71972355 71972373 CTTCACTGGTGAATGGGAG 58 NA Rattus norvegicus 81 LOC361914 ENSRNOG00000028985 ENSRNOT00000042494 3 1 1 80 2 88454302 88475533 CAAGACCTTATAAGGTACGGC 58 88454242 88454263 GAATCACTGGTGTGAGAATGAG 59 NA Rattus norvegicus 81 Dlst ENSRNOG00000005061 ENSRNOT00000007298 2 1 1 80 6 108944259 108944278 TGTGATTACAGTCCAGACCC 59 108944320 108944540 GCATCTCCAACAGCTTTCTC 59 NA Rattus norvegicus 81 Dlst ENSRNOG00000005061 ENSRNOT00000007298 3 1 1 80 6 108954047 108954065 CTTCATGTCGGCATTTGTG 58 108954109 108955212 GTTGCGTCATCAATCACTG 57 NA Rattus norvegicus 81 Olr614 ENSRNOG00000049509 ENSRNOT00000043599 2 1 1 60 3 76368049 76368067 AGTCCTGATTCCCATGCTG 60 76368007 76368028 GTCCTTTACATCTTTGTTCCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stap2 ENSRNOG00000047306 ENSRNOT00000075121 3 1 1 80 9 11069356 11069377 AGACCAGGATGAGAACTATGTG 59 11069418 11069684 ATGGCCTTGAGATCATCCC 59 NA Rattus norvegicus 81 Vom1r29 ENSRNOG00000048033 ENSRNOT00000075596 3 1 1 60 1 68221987 68222006 CCAGTGTCTCCATGATTGTC 58 68222029 68222047 CTGTGGATGTGTTGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550160 ENSRNOG00000037285 ENSRNOT00000056386 2 1 1 93 8 115273848 115274021 GGGCTGTCTGTATAGTAAGGG 60 115273775 115273794 CTCTTGCTGTCGTGATTCTG 59 NA Rattus norvegicus 81 Rn60_4_1360.2 ENSRNOG00000050918 ENSRNOT00000075024 2 1 1 80 4 71275306 71276130 TAGAGACATATCTGCAGCTCC 59 71275246 71275267 GAACAATGGTTTGGTATTCAGC 59 NA Rattus norvegicus 81 Rxfp1 ENSRNOG00000024120 ENSRNOT00000033107 2 1 1 80 2 178444525 178448445 CCAATGTGACTGTAATGTCCC 59 178444465 178444484 GGAGGTCATGGTACATCCTG 60 NA Rattus norvegicus 81 LOC100912127 ENSRNOG00000050448 ENSRNOT00000074489 3 1 1 60 4 1558429 1558447 TTACACCAATGTGGTTCCC 58 1558468 1558489 TACATCTTTGTTCCTCAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066,ENSRNOT00000071760 1 2 2 60 X 73616740 73616760 TACATTGGCTTCCTGAATGAG 58 73616782 73616800 AGAAGTCCTCATCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxa3 ENSRNOG00000006281 ENSRNOT00000008447 3 1 1 145 4 82140879 82140898 CAAGGCAGAACACTAAGCAG 59 82139385 82139403 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC689701 ENSRNOG00000046189 ENSRNOT00000044669 2 1 1 80 8 44666290 44666309 ATCAGAAACAAACAGCCGAC 59 44666349 44666996 TATCTGTTGGTGTATCATTGGC 59 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000068134 3 1 2 80 14 14382941 14385312 TCATCAGGCTTTGAAGGGAG 60 14382880 14382901 AGAAGGTCAATCTCTGATCTGG 59 NA Rattus norvegicus 81 Tmem206 ENSRNOG00000003915 ENSRNOT00000005387 1 1 1 80 13 110030398 110030420 GAGTACTCAGTTGTTCTTTGTGG 60 110030458 110031476 GGATTGGCCGTGATTATATCC 59 NA Rattus norvegicus 81 Rn60_5_1607.1 ENSRNOG00000027882 ENSRNOT00000036895 2 1 1 60 5 156898006 156898026 GATGAGATTGTCAACATTGCC 58 156898048 156898066 CAGAAAGTTCTCTGGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx1 ENSRNOG00000017029 ENSRNOT00000022960 2 1 1 80 8 71761977 71761998 ATCACTGATCCTGAGAAGATCG 60 71755123 71757962 CATCGGTAAGCTTGTCTGTG 59 NA Rattus norvegicus 81 Gemin2 ENSRNOG00000004360 ENSRNOT00000006137 3 1 1 80 6 80118476 80118494 CTACCTGAGGCTCACTCAC 59 80118538 80120370 ATCGTCTTTACTGCCCACC 60 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 1 2 2 81 19 52533164 52533183 GAGCCCTGTCTTCTGTAGAG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 2 2 2 82 2 235852556 235852653 AAACTAGGCTGTCTCGAACC 60 235852493 235852511 ACATGCGGATTTAGGTGCT 60 NA Rattus norvegicus 81 AABR07016805.1 ENSRNOG00000028222 ENSRNOT00000037897 1 1 1 60 14 115116759 115116778 GTCGACACCAACTGTTACAG 59 115116718 115116737 GACAGATGGAACTGTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910849 ENSRNOG00000047082 ENSRNOT00000075353 1 1 1 122 11 72934703 72934721 CAGTCACCTGAGGTCATGG 60 72932755 72932773 GAAGGTAGAGCCAGAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Gpr137c ENSRNOG00000026328 ENSRNOT00000036235 3 1 1 80 15 19613624 19613642 TTTGACAATCCAAGACGGT 57 19613686 19614640 CGGGTTTGATAAGCTTCCT 58 NA Rattus norvegicus 81 Tgfb3 ENSRNOG00000009867 ENSRNOT00000013516 3 1 1 80 6 109915905 109915924 CTATGCCAACTTCTGCTCAG 59 109914881 109915863 TTGTATAGTCCAAGCACCGT 59 NA Rattus norvegicus 81 Mir211 ENSRNOG00000035648 ENSRNOT00000053771 2 1 1 62 1 125042158 125042176 CTTTGCCTAGGCCTCTGAG 60 125042201 125042220 CAGTAGAGGTGACCACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc91 ENSRNOG00000001847 ENSRNOT00000002527 2 1 1 80 4 181971896 181983247 AGTACAAGGCACTTCTGCA 59 181983291 181983309 GTTTCTCGATGGCAGACAC 59 NA Rattus norvegicus 81 Usp6nl ENSRNOG00000017644 ENSRNOT00000046266 2 1 1 80 17 75777936 75778045 GTTTCCTTGACCGAACTCC 59 75777874 75777892 CAGTGAGAATTCGCTCTCC 58 NA Rattus norvegicus 81 Slc38a8 ENSRNOG00000025503 ENSRNOT00000038580 2 1 1 80 19 52126804 52131227 GATTCCAGTGTCATGAGGC 58 52126742 52126760 CAGAAACCAAGGTCCAGTG 58 NA Rattus norvegicus 81 Cep41 ENSRNOG00000010950 ENSRNOT00000014621 3 1 1 80 4 57979420 57979439 TCATTCAAGTTGCTTCCCTG 59 57974305 57979379 CAGAATCACTGTCTTCGAGTC 59 NA Rattus norvegicus 81 G3bp2 ENSRNOG00000002433 ENSRNOT00000003346 2 1 1 83 14 17507824 17509549 CTGGCTCCTGAAGGATCTG 60 17509591 17509614 GGAATCTCCAAATACTTCATCCTC 59 NA Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 1 2 2 80 1 191911790 191911809 AGCTGGATGATATTCCTCCC 59 191909407 191911747 AGGTGGCTATGATCCTGAC 59 NA Rattus norvegicus 81 Zrsr1 ENSRNOG00000009639 ENSRNOT00000012767 3 1 1 60 14 107751367 107751388 TGGAAGAAATCTCACAAACAGG 59 107751409 107751427 TTCCTCTTCTTGAGCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxc10 ENSRNOG00000016149 ENSRNOT00000021647 2 1 1 97 7 144578321 144581698 AGCTAAAGAGGAGATAAAGGCA 59 144581754 144581774 GCGTCTGGTGTTTAGTATAGG 58 NA Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 2 2 2 80 13 95208262 95208283 TATCAGATGTCTTCAGTGGACC 59 95196388 95208224 TCTGTCCATTCTTCTCTTTCCT 59 NA Rattus norvegicus 81 Olr200 ENSRNOG00000048852 ENSRNOT00000048075 1 1 1 60 1 170147894 170147913 ACTGTCAACAGGTTCTACCA 59 170147934 170147954 GAATCATGTCACTTCCAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ero1l ENSRNOG00000006462 ENSRNOT00000009404 3 1 1 80 15 19638932 19639032 ATCTCTGAGTGAGGAGACC 58 19638870 19638889 TCAACTTCACAGAAGCTGTC 58 NA Rattus norvegicus 81 Tm4sf19 ENSRNOG00000001757 ENSRNOT00000002396 3 1 1 161 11 71611979 71611998 GATGGGACCTACCTGATGAG 59 71608199 71611079 CAATAGACCAACGAACACCTG 59 NA Rattus norvegicus 81 Vom1r20 ENSRNOG00000028807 ENSRNOT00000041434 2 1 1 60 1 61133417 61133438 ATCTACTGTTCTCATCTTGCAC 58 61133457 61133477 TTTGTTTCTGGGAATGTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911225 ENSRNOG00000047000 ENSRNOT00000073302 1 1 1 86 1 141834379 141834397 CCAGTGACAAGGAGAAGGG 60 141834445 141835627 TCAGGGCTTTCTTACAGTCAG 60 NA Rattus norvegicus 81 Lpgat1 ENSRNOG00000004402 ENSRNOT00000064492 2 1 1 80 13 110462435 110465139 TATAAGACAGGAGCCTTTCCTC 59 110465180 110465198 TATCCACACGTTGCTGAGG 60 NA Rattus norvegicus 81 Flii ENSRNOG00000004159 ENSRNOT00000006753 1 1 1 80 10 46957291 46957311 CTGGCTTACCTTCACATTCAG 59 46957092 46957250 TGTGTCATGCGTACTACCTC 60 NA Rattus norvegicus 81 Olr213 ENSRNOG00000048519 ENSRNOT00000046171 1 1 1 60 1 170840577 170840595 TTTGCCTACATGAGACCCA 59 170840535 170840554 ACACAGAGACAACCTTATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl13 ENSRNOG00000024899 ENSRNOT00000039383 1 1 1 82 14 15254244 15254264 AGGCCAAGAAAGCTATATGTG 58 15253931 15254202 AGTAATACTTCTGCTTCGGAC 58 NA Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671,ENSRNOT00000075775 3 2 2 81 12 2905172 2906613 TCATTGTCAAAGGCACTGAG 59 2906657 2906675 ACCTGATCCAGTTTCTGGT 58 NA Rattus norvegicus 81 LOC100912491 ENSRNOG00000050162 ENSRNOT00000074431 1 1 1 60 5 137547204 137547222 TGCCATCATGTCCATAGAC 57 137547245 137547264 GATGACCTTGTACCTGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 3 2 4 61 5 50232939 50232958 AACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 Tmem57 ENSRNOG00000056156 ENSRNOT00000079536 3 1 1 81 5 153131020 153131039 AAGAAGCTCACAATGGACCT 59 153128114 153130976 TGTACTTCCGAAGCTCCTG 59 NA Rattus norvegicus 81 Lrrn4 ENSRNOG00000032989 ENSRNOT00000040802 1 1 1 80 3 125531496 125531514 GCTTACTTCTGTCCACACG 59 125526406 125531453 GAGCTCAAGTTGCAATTCTG 58 NA Rattus norvegicus 81 Adat1 ENSRNOG00000019434 ENSRNOT00000026309 1 1 1 80 19 44208840 44208861 ACAAAGGAAGTTGTCTCAATGG 59 44206532 44208799 ATTGAGGATGTCTCCGCTC 59 NA Rattus norvegicus 81 Tlr12 ENSRNOG00000042455 ENSRNOT00000065640 2 1 1 100 5 146792335 146792701 AGGAGGAAAGAAAGGTGGA 58 146792253 146792271 CTTAGGAAAGCCTTCCCTC 57 NA Rattus norvegicus 81 RT1-S2 ENSRNOG00000029001 ENSRNOT00000042882 1 1 1 81 20 3156681 3156878 GAGGAGAAACACAGGTGGA 59 3157046 3157064 CAGAGACAAGTCAGACCGG 60 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000004247 ENSRNOT00000064984 1 1 1 80 10 34976037 34976057 GTAAAGCAGAAGCAGATTCGT 59 34976097 34978237 CAAGACCATGATCCCTTTCTC 59 NA Rattus norvegicus 81 Dlgap5 ENSRNOG00000010721 ENSRNOT00000015553 3 1 1 80 15 24185812 24186313 AGACTCTAGGAAAGAACGTGG 59 24185752 24185773 GTGATTCCTTTCACTGAAAGGT 59 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292,ENSRNOT00000080109 2 2 2 80 7 141397230 141397249 GGAGTCAGATTTCTCTGGTC 57 141392283 141392882 TGAGAGTGGCTGATATGGA 58 NA Rattus norvegicus 81 Chpf ENSRNOG00000020038 ENSRNOT00000027165 2 1 1 98 9 82671922 82671941 TAATGACATCGTCAGTGCTC 58 82671357 82671861 TAGTGCATTCCCTCATGGT 58 NA Rattus norvegicus 81 Olr607 ENSRNOG00000050737 ENSRNOT00000007782 1 1 1 60 3 76249949 76249970 ATCTACAGTCTGAGAAACAAGG 58 76249910 76249931 ATGAAGTGCTCACTACTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc7a10 ENSRNOG00000010938 ENSRNOT00000015205 1 1 1 80 1 91445421 91446119 ACCCTCGAAAGAACCTACC 59 91446162 91446181 AGGCAACATTGGTGAATGTG 60 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 3 2 2 83 10 67839685 67839703 TAACCTCTGCTCGAACCAC 59 67839746 67842222 GAATAATACCTGACTGCATGTCC 59 NA Rattus norvegicus 81 AABR07053185.1 ENSRNOG00000004787 ENSRNOT00000006385 1 1 1 80 3 95856526 95856545 AACCAATCACAGTCTACGCA 60 95850761 95854226 TATAGTCACTATGCCTACAGACAG 59 NA Rattus norvegicus 81 Tp53bp2 ENSRNOG00000003237 ENSRNOT00000004330 1 1 1 80 13 100853491 100853509 CAAGCTCTGATTGGAACCC 59 100853553 100853801 CTTCATCGACTTGGTCCAG 58 NA Rattus norvegicus 81 Vopp1 ENSRNOG00000006646 ENSRNOT00000008885 3 1 1 88 4 88441266 88469739 GCTAATGGAGTGCACAGAG 58 88483667 88483685 AGTCTTCATAGGAACGGCA 58 NA Rattus norvegicus 81 Smarcd1 ENSRNOG00000061572 ENSRNOT00000081195 1 1 1 80 7 141362377 141363855 GCTACTCTAGACAACAAGATCC 58 141363895 141363914 AAAGCTCAGCATGAACTCTC 58 NA Rattus norvegicus 81 Smarcd1 ENSRNOG00000061572 ENSRNOT00000081195 3 1 1 80 7 141362327 141362347 AGACCCAGATGAACTCTTTCC 60 141362386 141363864 TTGTCTCATGGATCTTGTTGTC 59 NA Rattus norvegicus 81 Peo1 ENSRNOG00000014935 ENSRNOT00000031018 2 1 1 81 1 264759799 264760205 ACAGAGCATCAGGTCTGTC 59 264760246 264760268 CAAGTTGTCGATGACTACATGAC 60 NA Rattus norvegicus 81 Ntmt1 ENSRNOG00000024809 ENSRNOT00000035805 3 1 1 95 3 9656850 9658962 GGATCCAGTGGGTGATAGG 59 9659021 9659039 TGACAATGATGCCATTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Taf1c ENSRNOG00000015632 ENSRNOT00000020990 2 1 1 82 19 52250438 52250527 ATGTCACTGAGCAGCTCAG 60 52250374 52250393 GTTCTCCAGCATGAGTTTCC 59 NA Rattus norvegicus 81 pramef20l ENSRNOG00000043130 ENSRNOT00000065599 1 1 1 81 14 15449737 15449758 ATTCAATTGTCTCCAGCATCTC 59 15449800 15450593 CATCAGGCTCCTGAAGACC 60 NA Rattus norvegicus 81 Gpr107 ENSRNOG00000023589 ENSRNOT00000037742 1 1 1 80 3 10679794 10679814 GTACATGGTGGTCAACATCAG 59 10679129 10679753 CTGAAGCCAATCTCAGTGTC 59 NA Rattus norvegicus 81 Olr240 ENSRNOG00000030648 ENSRNOT00000049763 2 1 1 60 1 172100830 172100849 TCATTCCTATGCTCAATCCC 57 172100871 172100890 AGAGCATCCTTTACATCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox12 ENSRNOG00000040033 ENSRNOT00000061546 3 1 1 81 X 124252016 124252034 AGTACCCGGATGTGATCAC 59 124247257 124251422 CTCTTAAACCATCTCTTCACTCTG 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 1 2 2 80 3 173867264 173868468 TTAACCAGGAAGCTTAACCAG 58 173868509 173868528 CACATAGTCACTGAAACGGA 58 NA Rattus norvegicus 81 Necab2 ENSRNOG00000015084 ENSRNOT00000020341 3 1 1 80 19 52091392 52093412 CAGACAACACCAACCATGTG 60 52093583 52093603 CCAGGACATCTTCGTAGTCTC 60 NA Rattus norvegicus 81 Dnpep ENSRNOG00000019772 ENSRNOT00000026799 3 1 1 80 9 82508802 82508915 GTTCCATAAGGGTCCTGTG 58 82508740 82508758 TCTCGAATCAGGGACTCAG 58 NA Rattus norvegicus 81 Olr69 ENSRNOG00000015657 ENSRNOT00000020969 3 1 1 60 1 168143564 168143582 CATCTCTGCTGTGCTTCTG 59 168143522 168143540 AAAGCGGTGGATTACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 3 2 2 80 1 100892441 100892651 AACTTCCATGACAGCATCAC 59 100892694 100892712 GTGGAGCATTCTTTCCAGC 59 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 1 3 3 80 15 23853161 23859330 GTTCACGAGGCATTTACAGAG 59 23859370 23859390 GAAAGACCGAAAGAGCTTCTG 59 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 3 2 2 79 4 82159737 82159756 GGATGAAGAAGATCCACGTG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07051241.1 ENSRNOG00000046756 ENSRNOT00000074026 3 1 1 60 3 2513246 2513264 CTGCAGTAGACAGTCTTCG 58 2513290 2513308 TAAAGGGACAGGCAAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr530 ENSRNOG00000045546 ENSRNOT00000051533 3 1 1 60 3 74523870 74523891 CAATGTATTTCTTCCTCACCCA 59 74523908 74523930 GTGATGACAGTTGAGTAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 3 2 2 80 11 74764622 74764641 GAAATGATTGCTCAAGCACG 59 74760688 74764580 ACTGAGAGTCACCTTCACTG 59 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671,ENSRNOT00000065542,ENSRNOT00000066928,ENSRNOT00000091318 2 4 4 80 15 839150 839168 AAACGGCATTTCACTCAGG 59 839210 841842 TGACTCTATCTTGACTCTGGC 59 NA Rattus norvegicus 81 Olr804 ENSRNOG00000017906 ENSRNOT00000024076 1 1 1 60 4 71958003 71958021 ACCTTCTTGCATTACGGCT 60 71957961 71957979 GGGAGTAACTGGACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr804 ENSRNOG00000017906 ENSRNOT00000024076 2 1 1 60 4 71958223 71958241 GGTGCATTTCTTCTGCGAC 60 71958181 71958199 TATGTAGCTCCGTGTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk1a ENSRNOG00000024331 ENSRNOT00000033621 2 1 1 80 1 89061337 89062519 TTACCAAGGGTTGCTTCGA 59 89061275 89061293 AGATTGCAAAGCCAAACCA 59 NA Rattus norvegicus 81 Angptl7 ENSRNOG00000009589 ENSRNOT00000012726 3 1 1 80 5 165314198 165314218 AAGAACTACCGAATCTCTGGA 58 165313627 165314158 GTCACAGAACACCTCTAACTC 58 NA Rattus norvegicus 81 Narf ENSRNOG00000036664 ENSRNOT00000054920 2 1 1 80 10 110460154 110460174 GATCATGAAGCTCAAGAAGGG 59 110460214 110461930 CTGCCATTTAAGCATCCTCTG 60 NA Rattus norvegicus 81 Ano3 ENSRNOG00000004731 ENSRNOT00000006349 2 1 1 80 3 101876446 101876693 GGGATCTTCTTCATGATCTCCT 59 101876387 101876405 AAACTGCTCCATGACAACC 58 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 3 2 2 96 12 11779843 11779861 AGGAGTTCAGAGCTTAGGC 59 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA Rattus norvegicus 81 Ppbp ENSRNOG00000002829 ENSRNOT00000003794 3 1 1 80 14 18852704 18852723 TGAACTCTATCTCCCGTGTG 59 18852519 18852664 CATTCTTCAGTGTGGCTATCAC 60 NA Rattus norvegicus 81 Olr654 ENSRNOG00000047650 ENSRNOT00000042667 1 1 1 60 3 77169940 77169959 ATCCTAGTCACCATCACCTG 59 77169899 77169920 GGCAGAGAAAGTAGTACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grp ENSRNOG00000016999 ENSRNOT00000022845 2 1 1 124 18 61563703 61569954 GGCTGTAGGACACTTAATGG 58 61570040 61570059 AATTCCTTGCAGCTTCTTCC 59 NA Rattus norvegicus 81 RGD1566270 ENSRNOG00000048003 ENSRNOT00000048356 3 1 1 60 3 58009479 58009499 GGAAAGAGGAGAGGTACTCAG 59 58009439 58009457 GAACGACTCCATGTTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 3 4 4 80 12 747977 747998 TTCTTGGAGATGATCAAGTTCC 58 748036 751573 CTTGATAAGAGCGCTGATAGAC 59 NA Rattus norvegicus 81 Olr516 ENSRNOG00000049954 ENSRNOT00000073426 3 1 1 60 3 74014017 74014038 TCCTCTTCATGTATGTAAGACC 57 74013978 74014000 GACACTATCATATCATGCTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr518 ENSRNOG00000029222 ENSRNOT00000041668 2 1 1 60 3 74370878 74370897 CCTTTCTTTCTGTGCATCCA 59 74370837 74370856 CAGCAATGGAGGAATGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC361108 ENSRNOG00000009738 ENSRNOT00000012906 3 1 1 81 16 6444415 6466766 TGACTTAAAGTCTCAACAGCAC 59 6466806 6466826 TTCTGTGATGGTCTTTGTGAC 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416,ENSRNOT00000087118 1 2 2 80 10 10857129 10857658 CTGGTGAGGTACAAAGATGAC 59 10857069 10857089 GGTGAATTCCAGACTGTAGAG 58 NA Rattus norvegicus 81 Pgap3 ENSRNOG00000046143 ENSRNOT00000075076 2 1 1 80 10 86344939 86344958 GGACACATCTCCTACCTGAG 59 86344784 86344896 ATTCACCAGGCCTATAGCC 59 NA Rattus norvegicus 81 Acsl3 ENSRNOG00000014718 ENSRNOT00000020161 1 1 1 80 9 84576970 84576989 GACTGAATGAGACAGAGGTG 58 84577029 84578584 CCAAAGAGACGATATCCTTCAG 59 NA Rattus norvegicus 81 Itga8 ENSRNOG00000016538 ENSRNOT00000022711 3 1 1 80 17 79631149 79631169 CTTCCTATGATGACAGCTACC 58 79627516 79630157 CAGCAACCAATTCTTGCAG 58 NA Rattus norvegicus 81 Plekhd1 ENSRNOG00000038297 ENSRNOT00000058301 2 1 1 80 6 104365709 104365728 GTGGAGCAAGAGAAGAAGGA 60 104365766 104367092 CTTCTTCTCTATGGAGAGTTCCTC 60 NA Rattus norvegicus 81 Mir3099 ENSRNOG00000046704 ENSRNOT00000070831 3 1 1 60 1 70136997 70137017 TGTTTCAGTATGCACATAGGC 59 70136957 70136976 TCCGATGCTCTCATCTTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarca5 ENSRNOG00000018149 ENSRNOT00000024568 3 1 1 80 19 30951434 30952172 GCAAAGGGAATGGTATACTCG 59 30952211 30952232 AGTCTCATCTTGTCCATCTTCC 60 NA Rattus norvegicus 81 Parp9 ENSRNOG00000023463 ENSRNOT00000030975 3 1 1 81 11 67746062 67748772 CATTGAGCTGCAAACAACAG 59 67746000 67746019 AATCGATTGTGCCACTTGTC 59 NA Rattus norvegicus 81 Rnmtl1 ENSRNOG00000037238 ENSRNOT00000056278 3 1 1 91 10 64401879 64404289 TTACTCACCAAAGGCTGTG 58 64404344 64404362 ACATTGTTCACAATGGGCA 58 NA Rattus norvegicus 81 Vom2r10 ENSRNOG00000011191 ENSRNOT00000014883 1 1 1 80 1 86115258 86115279 GACTTCATCAAGTTCAAATGCG 59 86115319 86122653 TCAGGAAAGTGTTAAGCTGC 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 1 2 3 64 9 50968837 50968857 CAGATGAATCCCTGTATCCAG 58 50968883 50970326 ATCAATCCGTAGCTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 3 4 4 80 2 92587146 92592337 AAGGTCCTCCAGAGAAATGTG 60 92592378 92592397 TCTTTGCAGGTCGTAATGGA 60 NA Rattus norvegicus 81 Ceacam10 ENSRNOG00000050105 ENSRNOT00000027214 3 1 1 166 1 81643939 81644727 GACTACTGCTCACAGCCTC 60 81644857 81644875 AGTGGTTCCCTTGTACCAG 59 NA Rattus norvegicus 81 Zfp574 ENSRNOG00000055761 ENSRNOT00000079847 2 1 1 60 1 81956987 81957005 CTGGCTGTGATGGAAACTG 59 81957029 81957047 GGTAGATCTCAATGGCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem262 ENSRNOG00000047431 ENSRNOT00000073942 1 1 1 80 1 221444337 221444459 CTTTGACCATCCTGATCCTC 58 221444502 221444520 CCTCTCGGTAATTGATGGC 58 NA Rattus norvegicus 81 Cd320 ENSRNOG00000006901 ENSRNOT00000009067 1 1 1 82 7 18703755 18704970 GAAGAGTGTAGAATTGAGCCA 58 18705014 18705032 CTGATGTTGTCACAGGAGC 59 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000043425 ENSRNOT00000066744 2 1 1 80 12 13417945 13418526 GGTGTCAGACAAGTATCTCCT 59 13417885 13417903 ATTGGCCTATACTGCCAGG 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 1 1 1 60 9 85544903 85546056 CTGCACTGTTCATCAGGGA 60 85546079 85546098 ATCTCAAACAGCTCTTTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Kcnk13 ENSRNOG00000047363 ENSRNOT00000075794 2 1 1 86 6 123975217 124075603 AACTACCATAGGGTTCGGG 59 124075653 124075671 CTCGCACATCCAATGAGAC 59 NA Rattus norvegicus 81 Olr211 ENSRNOG00000048223 ENSRNOT00000047852 1 1 1 60 1 170800774 170800792 TTTGCCTACATGAGACCCA 59 170800732 170800751 ACACAGAGACAACCTTATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr540 ENSRNOG00000048820 ENSRNOT00000048376 2 1 1 60 3 74669814 74669834 CTTTCATGTTCTGATGCACAC 58 74669774 74669793 CAATCACTCCAGAGAAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 2 2 2 80 20 29365565 29366420 AGTTTGAGCAGGTTCAAAGC 59 29366463 29366481 TGTTCCCAGTAGTTGGACG 59 NA Rattus norvegicus 81 Snta1 ENSRNOG00000016062 ENSRNOT00000021715 3 1 1 87 3 149901783 149901802 TGAAGATTTGTCCTCTGCCA 59 149880955 149901739 CATATACTTAACCTCCAACACAACC 60 NA Rattus norvegicus 81 LOC100909686 ENSRNOG00000046718 ENSRNOT00000072865 2 1 1 60 1 169741867 169741887 TCTACATAGCCATGTGTTACC 57 169741908 169741927 GCGATGACCACATTAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1378 ENSRNOG00000030412 ENSRNOT00000042582 1 1 1 60 10 12731429 12731448 CACTGCCAATCTGAATGTCC 59 12731388 12731407 CCCACAGAATGAGAGTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1378 ENSRNOG00000030412 ENSRNOT00000042582 3 1 1 60 10 12731392 12731413 TCATAGCTCAACTCTCATTCTG 58 12731353 12731373 GTCACATCACAGAAGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 2 2 2 80 6 111376568 111379715 GGAAATTGGGAACCTGGAC 58 111376506 111376524 TAGGTCAAAGCAGCTTCCA 59 NA Rattus norvegicus 81 Rpe ENSRNOG00000038085 ENSRNOT00000079912 1 1 1 80 9 73707443 73707841 GAGAATGGGATGAAGGTTGG 58 73707881 73707902 ATCTATTTGATTAGCCCATGGG 58 NA Rattus norvegicus 81 LOC686900 ENSRNOG00000049864 ENSRNOT00000072638 1 1 1 60 3 77226269 77226290 GCCACTCATCTTTACCTATGTC 59 77226230 77226249 AGCAAATACCTTGTCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000078451,ENSRNOT00000001085 1 2 3 141 20 3399671 3399689 CAGAGGTCGCTCTATGTGG 60 3399087 3399105 GGACAAAGCAGAGGAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Mtrf1l ENSRNOG00000018773 ENSRNOT00000025398 2 1 1 80 1 42476681 42476702 GTTATACAGCATGCGTCTAGAG 59 42476020 42476644 GATCTTCCTTTAGTTCCAACCTG 59 NA Rattus norvegicus 81 Olr536 ENSRNOG00000009943 ENSRNOT00000013201 3 1 1 60 3 74596933 74596954 TACCATACATGATAGGCTTCAC 58 74596894 74596912 GGCAAACTGCTTATCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035074.1 ENSRNOG00000028592 ENSRNOT00000067752 2 1 1 85 12 3923070 3923088 CAAGGCTTCCAAGGAATGC 60 3922955 3923021 CACTCAGACCCAGTTGGAG 60 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 3 2 2 83 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117907 164117926 TGACAATGGCATTACCACTC 58 NA Rattus norvegicus 81 Hoxd9 ENSRNOG00000001580 ENSRNOT00000065426 1 1 1 80 3 61621027 61621392 AACTTGACCCAAACAACCC 59 61621435 61621454 GGTATTTGGTGTAGGGACAG 58 NA Rattus norvegicus 81 Fcna ENSRNOG00000017063 ENSRNOT00000023022 3 1 1 80 3 2853072 2853091 CTTTCCAGTACTGCTCTGTC 58 2852812 2853032 CCTACGATCTTAACATCTGGAC 58 NA Rattus norvegicus 81 AABR07059786.1 ENSRNOG00000008962 ENSRNOT00000011848 1 1 1 60 4 35890058 35890077 AGAGATGGGATAGATGCTGG 59 35890017 35890037 TATAGCCTTGATTGAAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a6 ENSRNOG00000018215 ENSRNOT00000024757 1 1 1 80 1 224830492 224830628 GCATAATACCGAAGAGCCA 57 224830672 224830690 AGTTGAAAGAGGAAGCCAG 57 NA Rattus norvegicus 81 RGD1562987 ENSRNOG00000018676 ENSRNOT00000025198 3 1 1 109 18 70982165 70982185 CCTGGAGCCATACATATACCC 60 70982256 70982739 TTGTATCTGCACCCTTGCA 60 NA Rattus norvegicus 81 Lgi1 ENSRNOG00000014758 ENSRNOT00000020411 1 1 1 80 1 256991704 256996004 TTATGACAACATTACAGGCACG 59 256996044 256996063 TGGGCCACAATGACATAGAG 60 NA Rattus norvegicus 81 Crygb ENSRNOG00000032926 ENSRNOT00000043766 3 1 1 95 9 71798129 71798236 CGAGATGGGAAAGATCACCT 59 71798053 71798071 CTGAAGTAGGTCTGCAGGT 59 NA InUTR Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 2 2 2 81 1 101217211 101218539 AGCTGAAGGACCAAGTCTC 59 101218584 101218602 GAAGGTGCAGAGATGAGCT 60 NA Rattus norvegicus 81 Olr799 ENSRNOG00000012214 ENSRNOT00000059651 1 1 1 60 4 68805518 68805537 CCCTTTCATCTTCACACTCC 58 68805560 68805578 GTTCACTCCATCACGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 3 2 2 83 10 86518429 86519330 CGTAGCCTTTCAAGTGAATCC 59 86519375 86519393 TGATTGGTGACGTCCTCAC 60 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767,ENSRNOT00000013331 2 2 2 80 15 23580276 23580294 GCCTTCTGCTATATGCTGG 58 23576517 23580235 CTCATCAAATGCTATGATGTGC 58 NA Rattus norvegicus 81 Slc29a3 ENSRNOG00000000568 ENSRNOT00000000689 1 1 1 80 20 30324050 30324069 TTAAACTCCGAAACTGCTCC 58 30304869 30324010 GGTAGCTCTCAAAGTAGTTCAG 58 NA Rattus norvegicus 81 Rgs9 ENSRNOG00000003800 ENSRNOT00000005076 2 1 1 80 10 97532281 97533946 TAAACGCCAAGTTGGTGGA 60 97532219 97532237 GGTCTCGAATCAGTTCGCT 60 NA Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 3 2 2 80 8 105335791 105335922 GAGTTCAACTTAGAGGTCAGTG 59 105335732 105335750 TGGCTGCACAATAAGATGG 58 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 1 2 2 80 4 72016401 72016700 AAATAAGCACAGGCAACGAC 60 72016340 72016360 GAAGTGTTACTTGTGCAACCT 59 NA Rattus norvegicus 81 Ppp1r18 ENSRNOG00000000816 ENSRNOT00000001084 2 1 1 86 20 3389092 3394432 ACAAACAGCTCAAGATCTCC 58 3389025 3389043 CTAGATCCTCCAGTACCGA 57 NA Rattus norvegicus 81 Papd7 ENSRNOG00000017613 ENSRNOT00000023712 1 1 1 80 1 36424976 36424997 AGATTATGAAAGCCATGACCAG 59 36425038 36426521 CAACATCGTTTCCAGGCAG 60 NA Rattus norvegicus 81 Aldh3a1 ENSRNOG00000002331 ENSRNOT00000003182 1 1 1 80 10 47495707 47495973 TGGACCAGAATCTGTACCT 57 47496017 47496035 TGATGTGGTCAAACCTCTC 57 NA Rattus norvegicus 81 RGD1562066 ENSRNOG00000050977 ENSRNOT00000074623 3 1 1 60 4 71079748 71079768 CTTCACTTTCGTTGTCATTGG 58 71079708 71079728 TTGCTTGGGTTTCACATAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adap1 ENSRNOG00000054033 ENSRNOT00000089590 3 1 1 80 12 17448931 17460431 AACCGTACTCTACAGGATACC 59 17460470 17460491 CAAACTTCCGACTTAAGAACTG 58 NA Rattus norvegicus 81 Gabre ENSRNOG00000061182 ENSRNOT00000087138 1 1 1 80 X 152220864 152220882 TCACTGTGCTCAACTTCCT 59 152220555 152220822 GGCTATTGGTTGGAAATTGGT 59 NA Rattus norvegicus 81 Rprm ENSRNOG00000005109 ENSRNOT00000006784 3 1 1 60 3 39596261 39596279 GCATCTTCTTCCTTGGCTG 59 39596219 39596238 ACTAGGAAGTTGATCATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smco2 ENSRNOG00000026883 ENSRNOT00000034051 3 1 1 80 4 181249183 181252423 CACTAAGAAATGGGATGGGT 57 181252465 181252484 GTTACTTCTCGCTCATCCTG 58 NA Rattus norvegicus 81 Olr415 ENSRNOG00000049460 ENSRNOT00000070947 1 1 1 60 3 20893896 20893914 TCTTCAAAGCCTTGTCCAC 58 20893935 20893956 GCTCCATAGTACAGAGAAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr10 ENSRNOG00000007504 ENSRNOT00000010300 2 1 1 80 6 93405694 93405713 CCTCCAAATGTCGACTATCC 58 93405753 93407109 AATTTCCACGACTGAATCTCTG 59 NA Rattus norvegicus 81 Atp13a4 ENSRNOG00000001714 ENSRNOT00000002333 1 1 1 80 11 74943753 74943773 CATCTTTGCAAGAATGTCTCC 58 74943813 74945616 CACATACCCACAAAGTAGTCC 59 NA Rattus norvegicus 81 Ppp3cb ENSRNOG00000054782 ENSRNOT00000082236 3 1 1 81 15 4228234 4229061 TCTTCTCTGTTCTCAGGGAG 58 4229105 4229123 ACTCCACTAGGCAACATCC 59 NA Rattus norvegicus 81 AABR07030995.1 ENSRNOG00000058822 ENSRNOT00000074598 1 1 1 80 10 111775495 111776911 GGAGAAACATTGGTTCCCT 57 111776955 111776973 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 Fam69b ENSRNOG00000004532 ENSRNOT00000006186 2 1 1 80 3 4087811 4087829 CTGGATGGTCTATGTGCAC 58 4087873 4089861 TACTGGTCACAGATCACCA 58 NA Rattus norvegicus 81 Traf5 ENSRNOG00000047957 ENSRNOT00000071698 1 1 1 80 13 110767983 110768006 GAGAAGAACTTCCAACTAGAACAG 59 110766557 110766987 CAGTGTTTGGATCTTCGGTG 59 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 1 2 2 80 15 28708272 28708292 CCTGTTATCAGTAAGGACTGG 58 28708334 28708885 GGCCAAGAATACATCCCTG 58 NA Rattus norvegicus 81 Cited1 ENSRNOG00000003189 ENSRNOT00000077678 2 1 1 81 X 72130268 72132080 GAGTATACCGACCAACAGC 58 72130205 72130223 TTGGCATTTCAGAGTCTGG 58 NA Rattus norvegicus 81 Desi1 ENSRNOG00000005577 ENSRNOT00000007424 1 1 1 90 7 123259404 123259422 TCTACGTGTACGACCTGTC 59 123247546 123248749 ATAGAGGTATGCCAGATTCCT 58 NA Rattus norvegicus 81 Rap2c ENSRNOG00000002529 ENSRNOT00000003414 3 1 1 113 X 138236842 138236860 GAACAGAGCAGTTTGCCTC 59 138234401 138236768 CTCTCATTGGCTTGATATCCTG 59 NA Rattus norvegicus 81 Ifitm3 ENSRNOG00000015078 ENSRNOT00000020265 1 1 1 81 1 213811573 213811591 GGTCCCTGTTCAATACGCT 60 213811004 213811530 CGATCCCTAGACTTCACAGAG 60 NA Rattus norvegicus 81 Mapk8ip3 ENSRNOG00000033568 ENSRNOT00000042066 2 1 1 80 10 14265059 14265204 CCTCAACAAAGCTGTGGTG 59 14264997 14265015 TGGGTCCATTGCTAGAGTC 59 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382,ENSRNOT00000074378 2 3 3 82 5 159066880 159066899 TCTTCATCACACCAAATCCC 58 159056498 159066835 GTTCTCCTCCCTTAGTCCG 59 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534,ENSRNOT00000082332 2 2 2 84 10 8441224 8441242 CCTCCGACAAATGTTTGGC 60 8427561 8433897 GAAACCAAATCCCTTCGAGC 60 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090,ENSRNOT00000090218 2 2 2 80 4 152938153 152938732 AATGTCTTAGGTACCGATACCC 59 152938772 152938791 TGTCATAGGACTGTGCTCTC 59 NA Rattus norvegicus 81 Abhd17c ENSRNOG00000012683 ENSRNOT00000017362 1 1 1 85 1 146253428 146253446 CTCTGATGTCTGGATTGCG 58 146249906 146253381 AGATATCTTGTCAATGCTGGG 58 NA Rattus norvegicus 81 Rasd1 ENSRNOG00000003348 ENSRNOT00000004475 2 1 1 82 10 46331551 46331707 CTCTATCCTCACAGGAGACG 59 46331488 46331506 GTTTGAGCCTTTGCACCTC 60 NA Rattus norvegicus 81 Chmp5 ENSRNOG00000008672 ENSRNOT00000011907 3 1 1 80 5 57278310 57278328 CAAATGAGATCCAGGAGGC 58 57278372 57280457 CATCCAACTCTGCTTCCAG 58 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 1 1 1 290 7 140452884 140453010 TCGGGCTCTAAGCAATGAG 60 140450796 140450814 AAGGAGAACGCACTCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Olr718 ENSRNOG00000060711 ENSRNOT00000073134 1 1 1 60 3 78663410 78663429 TCCTTGCCTATCTGTCACTC 59 78663369 78663387 ATCAACTTGGGTGAGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfml1 ENSRNOG00000056562 ENSRNOT00000081351 2 1 1 90 1 171797792 171815881 TGTTGAACACAAGCTGTGAC 59 171815934 171815952 TTCATCCAAGAGCCCTCTG 59 NA Rattus norvegicus 81 Ankrd49 ENSRNOG00000009233 ENSRNOT00000012583 2 1 1 80 8 13301310 13302314 AAAGAATCGGCTTGCTACAG 59 13301249 13301272 GTATATTCATCTTCGTCTCTGGTG 59 NA Rattus norvegicus 81 P2ry12 ENSRNOG00000013902 ENSRNOT00000018600 3 1 1 95 2 149442722 149444437 ATAACCAGGACCATGGAGG 59 149442645 149442663 CTTGTAGTCTCTGCTGCAC 58 NA InUTR Rattus norvegicus 81 Tmem236 ENSRNOG00000037982 ENSRNOT00000057785 3 1 1 85 17 81305458 81305476 TCTGGTTCTGTTGTCCCTG 59 81305522 81341424 TTTCATAACCCATTTGACTCCC 59 NA Rattus norvegicus 81 Sfxn2 ENSRNOG00000049308 ENSRNOT00000071243 3 1 1 81 1 266341409 266341562 GTGGAGAAGAGCAGGATGG 60 266341604 266341625 CGGAGTCATAAAGCTTCTTAGC 59 NA Rattus norvegicus 81 Rbbp4 ENSRNOG00000021492 ENSRNOT00000029177 1 1 1 80 5 147509254 147509509 CTAAACCAGACCCTTCTGGAG 60 147509194 147509213 TCCAAGAAAGCCCATAACCT 59 NA Rattus norvegicus 81 Rbbp4 ENSRNOG00000021492 ENSRNOT00000029177 3 1 1 80 5 147509254 147509508 TAAACCAGACCCTTCTGGAG 59 147509193 147509213 TTCCAAGAAAGCCCATAACCT 60 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442,ENSRNOT00000007287 3 2 2 82 6 49837021 49837210 CCTATTATGGCAATGACTCTGAC 59 49836961 49836980 AGTGAGTTTCTCCAGGAAGG 59 NA Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 2 2 2 80 8 99909769 99914978 CGAGGCAAGAGTTAGAAGTG 58 99915021 99915039 AGGCTCTGCATAAGTTCCA 59 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000010746 ENSRNOT00000014493 3 1 1 83 4 147717276 147718098 AAATTAAGCGAAACTGGCGG 60 147717212 147717230 TGTTGGGCATCAGGATCTG 60 NA Rattus norvegicus 81 Ppp2r5b ENSRNOG00000021025 ENSRNOT00000028542 3 1 1 80 1 221601883 221602025 AAAGTTTGTTCTGATGCTCCTG 60 221601824 221601843 CGATGCAAGATGGTCTTGAG 59 NA Rattus norvegicus 81 Bhlha15 ENSRNOG00000025164 ENSRNOT00000037251 2 1 1 60 12 12406456 12406474 GCTGACAAGAAGCTCTCCA 60 12406414 12406435 GCGACTTGATATAGTTCTTGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp709l1 ENSRNOG00000048910 ENSRNOT00000047433 1 1 1 86 7 10430923 10430941 GCTTTGCTGGATCCTTTCC 59 10420358 10430879 CAATTTGTATCCTATAGCAGTGAGG 60 NA Rattus norvegicus 81 RGD1304884 ENSRNOG00000017431 ENSRNOT00000023478 3 1 1 80 19 53729957 53729975 ACATGAAAGGCTTCTTCGG 58 53730018 53730871 GTTTGTTCTCATCCTCCTCG 58 NA Rattus norvegicus 81 Abo ENSRNOG00000046958 ENSRNOT00000044775 1 1 1 81 3 4377498 4378000 CTGACACCCACTAGGACAG 59 4377435 4377453 TGTCAATGTCGAAGGTCCC 60 NA Rattus norvegicus 81 Manba ENSRNOG00000052247 ENSRNOT00000087371 2 1 1 80 2 240688542 240688562 CGATACAGTTGCAGAAATCCT 59 240688602 240689347 ACGTCAAAGCTATATCTGGTG 58 NA Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 3 2 2 81 2 183164512 183176331 GATCTTCCGAGTGGGTACC 59 183164449 183164468 CTTTCCACTCGTAGATGCAG 59 NA Rattus norvegicus 81 Olr27 ENSRNOG00000050559 ENSRNOT00000044676 3 1 1 60 1 150172921 150172943 GTTCTCCTCTACATTATGAAGCC 59 150172883 150172901 ACACCTAACATCAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmynd10 ENSRNOG00000021602 ENSRNOT00000039258 2 1 1 80 8 116305579 116305836 CAGCTGCTTAAGCTTCAGG 59 116305878 116305898 CAGGAAACTCTTCAGATCAGC 59 NA Rattus norvegicus 81 AABR07029925.1 ENSRNOG00000052636 ENSRNOT00000085543 3 1 1 80 10 60231163 60235661 TCATCCTCATTCTATTGGACTCC 60 60235701 60235719 AGCAGAGGTCAGAGAAGGA 60 NA Rattus norvegicus 81 Spert ENSRNOG00000047413 ENSRNOT00000072138 3 1 1 148 15 57643929 57650545 TGTGATTCTACCTCAGAGGG 58 57643800 57643818 TAGAGGAGAAGCGGTTGAG 59 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 2 2 2 81 16 20694964 20694982 CTCCGTCCTGATCATCCTG 59 20695025 20695163 AGTTAGAGGCTGGAACTTGAG 60 NA Rattus norvegicus 81 Psmc3 ENSRNOG00000011414 ENSRNOT00000015757 2 1 1 80 3 79878459 79878478 GTGCCAATATTGACCTGGAC 59 79878521 79878623 GCAGGAAGTACGTTTGTCG 59 NA Rattus norvegicus 81 Orai3 ENSRNOG00000039730 ENSRNOT00000025732 2 1 1 93 1 199217833 199217852 TAAGCTCAAAGCCTCCAGTC 60 199220942 199220962 GTATTCATGATCGCTCTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860,ENSRNOT00000008857,ENSRNOT00000085647 2 3 3 80 3 117440070 117440090 GAATAATCGGTTCCATCACGG 59 117440131 117440555 TCACTTGAGCCTTAGCTTCC 60 NA Rattus norvegicus 81 Spink4 ENSRNOG00000008252 ENSRNOT00000060714 1 1 1 61 5 57248652 57248670 GAATGAATGCCACCTCTGC 59 57250628 57250648 CCTTCATGATCTGAATGTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Mrpl53 ENSRNOG00000052279 ENSRNOT00000084616 2 1 1 82 4 114808082 114808100 CAACCTCAACTGCTCTGTG 59 114808143 114808259 GATACCCATCTCCGAATAACAC 59 NA Rattus norvegicus 81 Olr80 ENSRNOG00000015769 ENSRNOT00000021115 3 1 1 82 1 168283727 168283846 CAGGTCTCCATTTCACCCT 59 168283663 168283684 AAGGAAATCCAATCCAGATGTG 59 NA Rattus norvegicus 81 Socs6 ENSRNOG00000038212 ENSRNOT00000058179 2 1 1 183 18 85980711 85980732 ATGCCTCCATAAGATTTGTCTG 59 85965388 85965406 CCTGAAGGTCTTCAGACTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141,ENSRNOT00000066975 3 2 2 80 7 49113291 49113309 TGATGTGGAGACCCTAGAG 58 49076503 49113247 GATCCAGTCTCTGTTTGCC 58 NA Rattus norvegicus 81 Glg1 ENSRNOG00000018668 ENSRNOT00000025570 2 1 1 80 19 43051911 43051930 GACTTTCATTTAGACCGGCA 58 43051971 43053209 TTCACCAGCTTGTGTATTCTC 58 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529,ENSRNOT00000078477 3 2 2 80 1 104696255 104696273 CTCATCAAGGACCTCCAGC 60 104696314 104706559 AATCTTGTCATTTGCTACGACC 59 NA Rattus norvegicus 81 Cd300le ENSRNOG00000042825 ENSRNOT00000034741 3 1 1 60 10 103590544 103590564 TTCTCTGCTCTGATCTTCCTC 59 103586744 103586762 CAGTGACTGGATCCTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr687 ENSRNOG00000054133 ENSRNOT00000089048 3 1 1 60 3 78016798 78016816 TTGATCTACCTGGCAACGA 59 78016756 78016774 GGCTGTAGATGATGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam109b ENSRNOG00000042522 ENSRNOT00000066149 3 1 1 257 7 123574148 123574166 GACTTTGCAGATCCAGAGG 58 123576333 123576351 ACACTCCTCTTGTTCAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408,ENSRNOT00000077707 1 2 2 80 1 47991235 47991254 ATCAATGTAGCCTTTGCAGC 59 47991294 47991690 TCCATAGATGTTCACCTTCTCG 60 NA Rattus norvegicus 81 Mafb ENSRNOG00000016037 ENSRNOT00000021452 3 1 1 60 3 156340657 156340676 TTCTTCTCCCAGCTTCAGTC 60 156340616 156340634 CATCCAGTAGAGGTCCTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487,ENSRNOT00000029757 1 2 2 80 15 48125833 48125855 CATGGTATCATAGACATCATGCC 59 48125892 48127756 AGACCCATTGACAAATGTTCTG 59 NA Rattus norvegicus 81 Chchd10 ENSRNOG00000028356 ENSRNOT00000031472 1 1 1 80 20 13665202 13665367 AATACAATCACGGTCTGAGC 58 13665141 13665159 CATCAAACTGTCGGTGAGG 59 NA InUTR Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 1 2 2 60 10 47339622 47339641 TTGTCAAGAAGAACGGTCAG 58 47339664 47339682 CGCTGTGACTTCTCATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690291 ENSRNOG00000058639 ENSRNOT00000088672 3 1 1 60 4 72307960 72307980 CTCTTTGTCCTGATCTTGGTC 59 72307999 72308020 GAAGAATCAGAGAATTTCCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomp ENSRNOG00000048470 ENSRNOT00000073155 2 1 1 94 12 8757633 8759424 GTTTCCAAGATGAACGCCA 59 8757557 8757575 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504,ENSRNOT00000077163 2 2 2 80 8 71006546 71008894 ACAGTTGGATAAAGTCCATCTG 58 71008933 71008953 GACTTGTGAGTGTATTCAGCA 58 NA Rattus norvegicus 81 Rpl41 ENSRNOG00000042233 ENSRNOT00000066159 1 1 1 80 7 2973784 2973916 GCCATCTTCCTTGAGACTC 58 2973201 2973219 TTCTTCTCTTGCGCTTCAG 58 NA InUTR Rattus norvegicus 81 Vcp ENSRNOG00000034242 ENSRNOT00000046102 2 1 1 80 5 58428860 58428882 CATTCGTGAATCTATCGAGAGTG 59 58427507 58428823 TCCTCTTCTACTTCCATAGCTG 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704,ENSRNOT00000041514 3 2 5 80 14 22193670 22211524 ACAGTAAAGCCTTAGGAAGACC 60 22211563 22211583 CCCAATATGTTCGCATTAGCC 60 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 3 2 2 101 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780660 117780680 ATCTTCTTGTCTCTGGAGCTC 59 NA Rattus norvegicus 81 LOC100359587 ENSRNOG00000046646 ENSRNOT00000071887 1 1 1 81 15 32051680 32051798 GATAAACTTTCTCCTGAGAGTTGC 60 32051837 32051856 AGAGGCTTCTTCAGAGACAG 59 NA Rattus norvegicus 81 Engase ENSRNOG00000027498 ENSRNOT00000038088 1 1 1 80 10 107510655 107510978 CAGGACAAGTTCTGGAGAC 58 107511021 107511040 GCAGAAAGAAGTGACAAAGG 57 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 3 2 2 80 17 81995442 81995461 CATCATCCAGTTTGGGTGAC 59 81995499 81999522 CAGTAGCATCTATGTCTATAGCAG 58 NA Rattus norvegicus 81 Eif4a3 ENSRNOG00000045791 ENSRNOT00000073140 1 1 1 80 10 108419255 108419512 GTGAAGCGTGATGAGTTGAC 60 108419194 108419213 AGTGTCGAACTTCCATTCCT 59 NA Rattus norvegicus 81 Eif4a3 ENSRNOG00000045791 ENSRNOT00000073140 3 1 1 80 10 108421921 108423303 GAGATGTCATTGCACAGTCTC 59 108421861 108421880 GGATATCCAAGCACTGAAGG 58 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 1 3 5 80 18 79424925 79426825 TCTTCAAGAACATTGTGACACC 59 79427267 79427286 AGCTAAATCTGCTGAGGGAC 60 NA Rattus norvegicus 81 Vstm5 ENSRNOG00000010480 ENSRNOT00000013927 3 1 1 81 8 13814082 13814103 TACTATGTTATCACCGTCACAG 58 13814145 13814255 CATAGCGGATCTCAGACAC 58 NA Rattus norvegicus 81 AABR07016841.1 ENSRNOG00000006051 ENSRNOT00000008154 1 1 1 60 15 1055157 1055178 CTGGAGAAGAGAATAAATGCTG 57 1055197 1055217 GTTACAGATGACAGAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324,ENSRNOT00000042677 2 3 3 80 12 20955542 20956031 GTGGAGCAACAGATTCCTG 59 20955480 20955499 AGCTTTCCCTTCCTGAAGAG 60 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000089492 1 1 3 80 4 85299280 85301214 TTGGATGACAAGGAGTATCCG 60 85299220 85299241 GTGATGTTTCTCAGGATGAAGG 59 NA Rattus norvegicus 81 Rn60_X_0694.1 ENSRNOG00000051279 ENSRNOT00000076465 1 1 1 60 X 68470246 68470265 TCAAACCTTACTTGCCTCTG 58 68470286 68470306 AGTCTGTGGTACAAGATTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r35 ENSRNOG00000050881 ENSRNOT00000074735 2 1 1 101 12 21988367 21988385 GAGAAGTTGGCGATGTTGC 60 21988193 21988211 CAGAGAATCTGGGTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Arhgap21 ENSRNOG00000008659 ENSRNOT00000068156 1 1 1 80 17 87731389 87733264 GAGATGTATCAGATTCAGCCAC 59 87728390 87728410 CCCTGCTATACTGATCCTTCC 60 NA Rattus norvegicus 81 Prss8 ENSRNOG00000019616 ENSRNOT00000026572 3 1 1 97 1 199374972 199374990 ATCACCTACAATGGCGTCC 60 199374409 199374911 TCCTTGCTGTGTTCTCTGG 60 NA Rattus norvegicus 81 Itgb2 ENSRNOG00000001224 ENSRNOT00000001639 2 1 1 80 20 11785449 11787257 AAAGCCTACTACAAACTCTCC 58 11785389 11785409 GGAGTCATAGGTGACTTTCAG 58 NA Rattus norvegicus 81 Dpp3 ENSRNOG00000031485 ENSRNOT00000026968 1 1 1 80 1 220177469 220177487 CTTCACTTCCCTGGATGTC 58 220177230 220177426 CTCAGGTCATCATAGTTGGG 58 NA Rattus norvegicus 81 Mir16 ENSRNOG00000035504 ENSRNOT00000053627 3 1 1 67 2 165606094 165606114 CACGTAAATATTGGCGTAGTG 58 165606143 165606161 CTGTCACACTAAAGCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1632 ENSRNOG00000046582 ENSRNOT00000050189 3 1 1 60 15 27499522 27499541 TTCTGGTATCATCATGCTGG 58 27499481 27499500 ATGGAGAAGACAGGGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mlkl ENSRNOG00000042353 ENSRNOT00000036972 1 1 1 80 19 43513252 43517691 CGATCAAACAGTGAAGCCC 59 43513190 43513209 CTATCCAGCAGTTCCCTCAG 60 NA Rattus norvegicus 81 Prdm4 ENSRNOG00000004962 ENSRNOT00000006886 3 1 1 80 7 23974855 23974876 GAATTCTGCATCATTACAACCG 59 23974917 23976006 CTGTTCTTCACGGTTCCTG 59 NA Rattus norvegicus 81 Rsph4a ENSRNOG00000049696 ENSRNOT00000036449 1 1 1 80 20 32459583 32459601 CCAAGTGATTGACCTGGTG 59 32459645 32463920 CAATTACAGCGACCCTGAG 58 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000082473,ENSRNOT00000044470 3 3 4 80 7 123635858 123636016 GAGATAGAGAAGGCCAAGGG 59 123635797 123635816 ACCAAACAGGTCATTGACCA 60 NA Rattus norvegicus 81 LOC100910636 ENSRNOG00000024425 ENSRNOT00000032838 2 1 1 80 12 21710282 21710303 TCTTACCAGTGCAGAATTTGAG 59 21708850 21710242 ATACAGGAAGTCTCCAAGCA 59 NA Rattus norvegicus 81 LOC100910636 ENSRNOG00000024425 ENSRNOT00000032838 3 1 1 80 12 21710282 21710304 CTCTTACCAGTGCAGAATTTGAG 60 21708851 21710243 TACAGGAAGTCTCCAAGCAC 60 NA Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 2 2 2 103 10 15325080 15325099 AAGTATGCATGTGGAGAAGC 58 15324436 15325017 CCACAAAGTTCACACTATTCTC 57 NA Rattus norvegicus 81 Lrrc57 ENSRNOG00000009143 ENSRNOT00000049756 3 1 1 80 3 112384035 112384054 ACCAGATTCGGAGTATACCT 57 112367787 112383994 TCTGAGATATCTGGTTCTGGT 58 NA Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 1 2 2 80 18 68992101 68992120 GAACACAGAGTTTCATGGGA 58 68992161 68995200 GTGGCATATAAGTGTATCCGA 58 NA Rattus norvegicus 81 Matn2 ENSRNOG00000006060 ENSRNOT00000008361 1 1 1 80 7 73195979 73195997 GCAGTGAGGACTCATTCGT 60 73196041 73197404 CATCTTCCCTTCTGCAGGT 59 NA Rattus norvegicus 81 AC123018.1 ENSRNOG00000042147 ENSRNOT00000065311 1 1 1 80 1 193844591 193844609 GAAGTTCATCAGGCACCAG 59 193844653 193844694 CCCTTGAATTTGACGCCTC 59 NA Rattus norvegicus 81 Mslnl ENSRNOG00000039339 ENSRNOT00000060286 3 1 1 80 10 15115548 15115566 TGGAACATCACATCCGGAG 60 15115610 15115710 GAGAACTGCCTCTGTCTGG 60 NA Rattus norvegicus 81 Olr640 ENSRNOG00000059418 ENSRNOT00000086249 2 1 1 60 3 76918267 76918286 AACTTGCCTGCATAGATACC 58 76918308 76918327 ATGGCACCACTATTAGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231,ENSRNOT00000077701 1 2 2 80 19 55937705 55937723 TCCTAGAGCTGTATCGGGT 59 55937761 55938375 GGTTAAGATTATTCTTCACGACCTC 60 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 2 2 2 80 1 199292871 199292960 CTGAAGATCACCAATGCTGG 59 199293003 199293021 CACAAACACCTCACTCTGC 59 NA Rattus norvegicus 81 Rad9b ENSRNOG00000021480 ENSRNOT00000048454 2 1 1 80 12 39714961 39718313 GAATCACTGGATTTAACCAGC 57 39718353 39718373 AAGTCCAACCTGAAAGAAGTC 58 NA Rattus norvegicus 81 RGD1560927 ENSRNOG00000040008 ENSRNOT00000061499 2 1 1 80 X 124531762 124532043 GTTTATGAGAAAGGAACCTGGA 58 124531703 124531721 ATTTCTTCTGGTCCACTGC 58 NA Rattus norvegicus 81 Dtwd1 ENSRNOG00000009593 ENSRNOT00000012966 3 1 1 80 3 118431042 118431061 ACTGCTACACATGCTATGTC 58 118431101 118434808 TATCAATCTTCAGTGGAAGCTG 58 NA Rattus norvegicus 81 Tsg101 ENSRNOG00000013381 ENSRNOT00000018194 1 1 1 93 1 102957748 102957766 ATATTTGGCGAGGAGCCTC 60 102954258 102957691 AGTAGGAGGTGTTTGGTGG 59 NA Rattus norvegicus 81 Inpp5k ENSRNOG00000056954 ENSRNOT00000084496 1 1 1 80 10 63795170 63795192 CTATGTATCCTATGTCTGGGTCG 60 63795228 63795382 GCACTGATGTTGATATACACCTG 60 NA Rattus norvegicus 81 Arl14ep ENSRNOG00000004891 ENSRNOT00000006481 2 1 1 80 3 97989070 97989089 CCCAGATCATCAATGGAAGC 59 97987159 97989028 TAGCAGTCCTTCCATCTGAC 59 NA Rattus norvegicus 81 Arl14ep ENSRNOG00000004891 ENSRNOT00000006481 3 1 1 80 3 97989069 97989088 CCAGATCATCAATGGAAGCG 59 97987158 97989028 TTAGCAGTCCTTCCATCTGAC 60 NA Rattus norvegicus 81 RGD1560730 ENSRNOG00000014266 ENSRNOT00000019103 1 1 1 115 1 104001076 104009816 GAGGGAAGGAACACTAGTGG 60 104000980 104001001 TGAAACTCGATGGAACAAAGTG 60 NA Rattus norvegicus 81 AABR07000550.1 ENSRNOG00000046617 ENSRNOT00000075461 2 1 1 86 1 17602367 17602386 TAACGAAGACTGGTGGTACG 60 17602435 17605526 CGGTACAGTGTCTCACTGG 60 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000068251,ENSRNOT00000088955 2 2 2 124 1 82171918 82171937 TAAGAACCTTACAGGGCTGC 60 82172113 82172131 ACAAGAAGGTGCCATCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Mir192 ENSRNOG00000035530 ENSRNOT00000053653 2 1 1 60 1 221635000 221635021 TATGAATTGACAGCCAGTACTC 58 221635041 221635060 ACCTGTGACCTATGGAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir192 ENSRNOG00000035530 ENSRNOT00000053653 3 1 1 60 1 221635001 221635021 ATGAATTGACAGCCAGTACTC 58 221635041 221635061 TACCTGTGACCTATGGAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etnk1 ENSRNOG00000014856 ENSRNOT00000020042 3 1 1 80 4 177436299 177436317 TTTGGCAGTGATGTCACTG 58 177436360 177441622 GAAGAAGTGAGAAGCCAGTG 59 NA Rattus norvegicus 81 Mpc1 ENSRNOG00000012415 ENSRNOT00000017282 2 1 1 80 1 53027717 53038112 CGGGACTATCTCATGAGTACTC 59 53027658 53027679 CTTCATGTCATTGATAGCAGCA 59 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822,ENSRNOT00000079452 3 2 2 80 9 92309239 92309258 TGATAATGAGCAGCAGAGGT 59 92308616 92309199 TTTAAACTCCGAAATCCTCCGA 60 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923,ENSRNOT00000008160 2 2 2 80 7 142650351 142650370 ACGCTATTTATGGCAATGGA 58 142650413 142653229 GGTGAACACCAGATTTCCT 57 NA Rattus norvegicus 81 Sft2d2 ENSRNOG00000003038 ENSRNOT00000004065 3 1 1 81 13 83451853 83454622 GGATTGTTTGCTGTTGTGGA 59 83451791 83451809 TCCCTAGAGCAAAGCACAC 60 NA Rattus norvegicus 81 Olr639 ENSRNOG00000052168 ENSRNOT00000087552 3 1 1 60 3 76890862 76890881 TTTGCTTCCTGTTCTTCTCC 58 76890904 76890922 AGGATCACCAGATTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564955 ENSRNOG00000024068 ENSRNOT00000033044 1 1 1 80 X 135756948 135756967 AGAAGACAGACAACATTGGG 58 135756269 135756906 TCCTTGAATTGCCATTCCTC 58 NA Rattus norvegicus 81 Apol2 ENSRNOG00000048451 ENSRNOT00000074293 1 1 1 82 7 118729484 118732293 TGAGTTGTCCAGAGCTGAC 59 118729420 118729438 TGTTCTGGTCTTCCTCAGC 59 NA Rattus norvegicus 81 Hba1 ENSRNOG00000029886 ENSRNOT00000051483 3 1 1 81 10 15603573 15603593 AACCAACATCAAGAACTGCTG 60 15603397 15603530 AGCGAACATCCTCTGTAGG 59 NA Rattus norvegicus 81 Olr715 ENSRNOG00000057668 ENSRNOT00000084255 2 1 1 60 3 78595499 78595519 AGAAGACCATTTCCTTCACAG 58 78595459 78595477 CCACCAAATAAGTGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx4 ENSRNOG00000001786 ENSRNOT00000002432 2 1 1 80 11 70711270 70719272 ACCCAGACAAGAGATTCACG 60 70711209 70711227 CTCTGACTCGAAGGAGGTG 59 NA Rattus norvegicus 81 Vom1r58 ENSRNOG00000049668 ENSRNOT00000048444 3 1 1 60 1 75131820 75131840 TTGTTGGCCATGGATATACAG 58 75131861 75131880 GAATTGTGGTTTCCCATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adal ENSRNOG00000012166 ENSRNOT00000016529 1 1 1 80 3 113107108 113107128 CCTTCTTATGACCAGCATCAC 59 113107167 113107668 AACACCTTTATCATCGGTACAG 58 NA Rattus norvegicus 81 Adal ENSRNOG00000012166 ENSRNOT00000016529 3 1 1 80 3 113107101 113107122 GACAGTTCCTTCTTATGACCAG 59 113107160 113107661 TTATCATCGGTACAGATCACAG 58 NA Rattus norvegicus 81 Spata45 ENSRNOG00000039841 ENSRNOT00000061146 3 1 1 60 18 19149325 19149343 TACGAGTTCAGAAGAGGCA 58 19149283 19149304 TTGACATTCATGCTCGATAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qser1 ENSRNOG00000037514 ENSRNOT00000056808 1 1 1 80 3 94715263 94715281 AGTTACATGGAGTTGCTCG 58 94713476 94715219 AAGAAGCTCATCGTTGCTC 58 NA Rattus norvegicus 81 Car1 ENSRNOG00000010698 ENSRNOT00000014267 3 1 1 95 2 88217823 88217841 CCTACAATCCTGCAACTGC 59 88217900 88220206 CACCTTTCAGCACTGACTG 59 NA Rattus norvegicus 81 Bckdha ENSRNOG00000020607 ENSRNOT00000027995 2 1 1 80 1 82423769 82424346 CACGAAAGAAGGTGATGGAG 59 82423708 82423726 ACACATCGGAGAAGAGGAG 59 NA Rattus norvegicus 81 Sall3 ENSRNOG00000026116 ENSRNOT00000034896 2 1 1 117 18 77575095 77576493 ATCTCAAGGTACACATGGGC 60 77574997 77575016 TCAGAGAACTTGAGAGCGTC 60 NA Rattus norvegicus 81 Vom1r89 ENSRNOG00000030085 ENSRNOT00000042169 1 1 1 60 4 97567698 97567716 TCAACTGACCTTCGTTCAC 58 97567656 97567675 GTCTGTAAGCCAAATCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptf1a ENSRNOG00000016902 ENSRNOT00000022727 1 1 1 97 17 86200613 86200631 TCATCATCTGCCATCGAGG 59 86201016 86201034 TTCATCAGCCCAGGAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ptf1a ENSRNOG00000016902 ENSRNOT00000022727 3 1 1 99 17 86200611 86200629 GGTCATCATCTGCCATCGA 60 86201016 86201034 TTCATCAGCCCAGGAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1559726 ENSRNOG00000034073 ENSRNOT00000047841 2 1 1 60 18 84162523 84162542 AGAGACAAAGGATCTGGAGG 59 84162589 84162610 ATCTAGACCATTCTCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 3 2 3 90 13 82562094 82563160 CTGTTTCAACCTTGCTGGG 59 82563213 82563232 AGGAATAACGTCACCTCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 2 2 2 83 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054406 14054425 TTCTCTTGGAGTGAGGAGTG 59 NA Rattus norvegicus 81 Olr1243 ENSRNOG00000061259 ENSRNOT00000088227 2 1 1 60 4 1566977 1566996 ATTTCTGTGACATCCTCCCT 59 1567016 1567037 ATCTCATTAACATAGGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041179.1 ENSRNOG00000016400 ENSRNOT00000022122 3 1 1 98 X 121612985 121613174 TTCATGTTACCCGCATCCA 59 121613236 121613254 GGTAGGAACATGGAAGGCT 59 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 3 2 2 81 15 2639718 2639736 GACATCAGGTACCAACTGC 58 2636609 2639675 GACCTTTGCAGAAATAGAAGC 58 NA Rattus norvegicus 81 Fam227b ENSRNOG00000037124 ENSRNOT00000055995 3 1 1 80 3 118269016 118271887 CTACATAAGCTGCGTGTTGAG 60 118268956 118268974 CAGTGACTGTAGCGACTCC 60 NA Rattus norvegicus 81 Nova2 ENSRNOG00000013847 ENSRNOT00000057965 1 1 1 85 1 79848610 79855870 ACTTCTACCCAGGAACTACAG 59 79855917 79855935 TTCTGCGATAAAGCTGTGG 58 NA Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 1 2 2 80 1 197883673 197883692 ACTATTACTGATGTCCGCAC 58 197883410 197883630 AGGGCCTTCTACCTTAACC 58 NA Rattus norvegicus 81 Ttll11 ENSRNOG00000019339 ENSRNOT00000032204 1 1 1 80 3 15119330 15131245 CGGACCTTCATAAGGAACTG 58 15119269 15119287 GGTGATGTCGATGTAGAGG 57 NA Rattus norvegicus 81 Olr462 ENSRNOG00000009624 ENSRNOT00000012746 2 1 1 60 3 73226460 73226481 CATAACAGACAGTCAGCTTCAC 59 73226421 73226439 GACAAAGGAGAGGTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 1 2 2 239 X 111122744 111130319 TCGAGAAAGAACAGCTCCG 60 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC362921 ENSRNOG00000033584 ENSRNOT00000042213 3 1 1 81 7 101214556 101214574 AAGAGCAGGTGTTCTGGAG 59 101203726 101214512 TGTTCCAATGTACATGGCCT 60 NA Rattus norvegicus 81 Ece2 ENSRNOG00000001715 ENSRNOT00000044482 2 1 1 80 11 83961507 83961623 GACCTCATTGACAAGATCGG 59 83961446 83961465 TACTGCCTTTAGCACTTCCA 59 NA Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 1 1 1 88 7 7534403 7534423 GGACTCTCACTTAAAGACTCC 58 7534329 7534351 CAAATCTGGGAATGGAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Pnpla3 ENSRNOG00000022268 ENSRNOT00000015767 3 1 1 80 7 125053415 125053433 TATCCAGTGGCTACAGTGG 59 125053477 125054054 GCTCTGGATCTGGTAGAGG 59 NA Rattus norvegicus 81 RGD1564306 ENSRNOG00000029793 ENSRNOT00000049144 2 1 1 60 3 38367750 38367771 TACGGAGGTCTTAATTTATGGC 58 38367791 38367810 CTGAAGCATCCATTTAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000089229,ENSRNOT00000037115 3 3 3 80 2 174323431 174330975 GAGAGGAAGAGGTTCAGGA 58 174323369 174323390 TTTCACCATAAGTCTCTTCAGC 59 NA Rattus norvegicus 81 AABR07003230.1 ENSRNOG00000049445 ENSRNOT00000072699 1 1 1 80 1 99399353 99399474 GAGTCACAAGTCACAAGTGAG 59 99399516 99399534 TTGTTGCAAGATGCCTCAG 59 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725,ENSRNOT00000057989 3 2 2 80 4 100447370 100448478 GCTTTCAGAGGAATTCCTATCTC 59 100447312 100447331 CTGCCATCCGTTAGTTTCTG 59 NA Rattus norvegicus 81 LOC100910581 ENSRNOG00000024505 ENSRNOT00000035372 2 1 1 101 12 21727858 21727876 GAGAAGTTGGCGATGTTGC 60 21727684 21727702 CAGAGAATCTGGGTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Duox2 ENSRNOG00000017395 ENSRNOT00000023939 1 1 1 80 3 114223439 114223460 CTAGTGTCTTTGTGAATGATGG 57 114222470 114222759 CTGTCATACCTGGAACTGTC 58 NA Rattus norvegicus 81 Arfgef3 ENSRNOG00000011460 ENSRNOT00000015927 3 1 1 80 1 13895823 13895842 CTGCTCAACCTGAAACTGTC 59 13895013 13895783 CATGAACTCTTTCATCATGCCT 59 NA Rattus norvegicus 81 Olr621 ENSRNOG00000047515 ENSRNOT00000044856 3 1 1 60 3 77309714 77309732 GATTACCATTCTGTGGCCC 58 77309756 77309774 AACAAGGGCTGCAAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr157 ENSRNOG00000017528 ENSRNOT00000055536 2 1 1 88 5 167110297 167120933 TTTCACCTCATCAGCTGGG 60 167120985 167121003 GACACATCAGAGGCATCGT 60 NA Rattus norvegicus 81 Olr866 ENSRNOG00000050435 ENSRNOT00000046941 1 1 1 60 5 137845831 137845850 ACCTCATTGAGATTGTGGAC 58 137845790 137845808 AGGGAGATTGGAGTAACGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000083061,ENSRNOT00000036273 3 2 2 80 3 136731626 136733037 CTGAGCTAAAGAGTAATGAGGA 57 136718455 136718473 AAGAGCGAGAATACATCCG 57 NA Rattus norvegicus 81 Znhit2 ENSRNOG00000021794 ENSRNOT00000028482 2 1 1 60 1 221425119 221425137 ACTTCTGTGCTACTCTGCT 58 221425161 221425179 GAGTGAAAGACTTGCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npr1 ENSRNOG00000014684 ENSRNOT00000020307 3 1 1 80 2 189848107 189848129 TCTAGAGAATGAGAGTATCACCC 59 189847952 189848068 AGAAAGAGCATTCCCTTGAC 58 NA Rattus norvegicus 81 Tas2r118 ENSRNOG00000021799 ENSRNOT00000034936 2 1 1 60 4 51002402 51002423 CCACCTTCTTCATCTTCTTCAC 59 51002363 51002381 GTGCCAATAAAGGAGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0898.1 ENSRNOG00000051247 ENSRNOT00000076275 2 1 1 60 13 84915423 84915441 CATGGCATCAACAATGCTG 58 84915381 84915400 CACTTTCTCTTGTTGCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 1 2 2 80 3 3845414 3845434 ACAAGTTTGACATTGGGAAGG 59 3844833 3845373 TGTATAGGACTCGGTCTGTG 58 NA Rattus norvegicus 81 LOC685027 ENSRNOG00000029310 ENSRNOT00000051387 2 1 1 60 5 144928477 144928495 ATGTCCTGGGTCCTAAGTC 58 144928518 144928537 TCTTTAGCCTTCACCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685027 ENSRNOG00000029310 ENSRNOT00000051387 3 1 1 60 5 144928477 144928495 ATGTCCTGGGTCCTAAGTC 58 144928517 144928537 TCTTTAGCCTTCACCTTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537,ENSRNOT00000084613 1 2 2 80 18 1180526 1181032 ATTTGCTGATGATATTGGCTCC 59 1180467 1180488 GAACTAGATCTTCCCTGGTGAG 60 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537,ENSRNOT00000084613 3 2 2 80 18 1180526 1181030 TTGCTGATGATATTGGCTCC 58 1180465 1180485 AAGAACTAGATCTTCCCTGGT 58 NA Rattus norvegicus 81 Agps ENSRNOG00000001547 ENSRNOT00000002111 3 1 1 80 3 62675253 62681508 TCACAAATGAACCGGATTCTC 59 62681546 62681568 CAAATCTTGTCCTGTTATCCCAG 60 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988,ENSRNOT00000002492 1 2 2 88 11 81333952 81333970 TGGTCACAATGGGATACCG 60 81332018 81333900 TAGGACCAAGAACACCTGC 59 NA Rattus norvegicus 81 Fxyd3 ENSRNOG00000021095 ENSRNOT00000028637 3 1 1 80 1 89505916 89505934 AAGAGTTTGCTCTGAGCCT 59 89504235 89504338 GGCTATCTTTATCTTCAGGGTC 58 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000067585 1 1 2 81 9 9935917 9935935 TAGTGGCTTCCCTACAGGA 59 9935754 9935872 TCCTCAAGGATCTGGACCT 59 NA Rattus norvegicus 81 Tbx6 ENSRNOG00000019771 ENSRNOT00000068543 2 1 1 113 1 198214926 198215032 TACCGCTACCCTGATTTGG 59 198215109 198215127 CAGAGCAGATGGGAGAAGG 60 NA Rattus norvegicus 81 Izumo4 ENSRNOG00000031950 ENSRNOT00000049766 3 1 1 80 7 11876290 11876565 CAGGATGTAAAGATGAGAACCAC 59 11875885 11875904 CAGGTTAACCAGATGCTGAG 58 NA Rattus norvegicus 81 Olr833 ENSRNOG00000015652 ENSRNOT00000020958 2 1 1 60 5 59198602 59198622 CAGAGTATATCCTCCTGGGAC 59 59198562 59198581 AGCACAAACAGAGCTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693,ENSRNOT00000066634 1 2 2 81 20 46219691 46219713 CGAAGATCCTGTGATAATTCCTC 59 46219754 46223702 TTCACCCTTCAGTTCCCTC 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693,ENSRNOT00000066634 3 2 2 82 20 46219691 46219713 CGAAGATCCTGTGATAATTCCTC 59 46219755 46223703 TTTCACCCTTCAGTTCCCT 59 NA Rattus norvegicus 81 Cyb5d2 ENSRNOG00000024553 ENSRNOT00000036942 3 1 1 82 10 59348574 59355101 ATTTGTCGGAAGACTGATTGG 59 59348512 59348530 TCACCATGGCTTCTACCTG 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 3 3 3 86 X 77120037 77135885 GTCCATCACATTAAAGTTTCCC 58 77135932 77135950 TTCTTGGAGGGTCTTTGGA 58 NA Rattus norvegicus 81 Agtr1b ENSRNOG00000010640 ENSRNOT00000014178 1 1 1 103 2 105224193 105224211 TTGAAAGAAGCCCAGAGCT 59 105151013 105151033 TCAGTAGAGGAGTTAAGGGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC691153 ENSRNOG00000048187 ENSRNOT00000072274 2 1 1 71 10 85573753 85573771 TTTCAATCGTCTGATCCGC 58 85573700 85573718 AAACTTGGAGTGTCCAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfp ENSRNOG00000025811 ENSRNOT00000038909 3 1 1 86 X 1314256 1314513 CCTTGCCCTGTAAATGGAG 58 1314563 1314581 TTCATCACAGCTGATGGAC 58 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000052376 3 1 2 67 1 89953326 89953344 CATCAAGCAATGTGTCGAC 57 89953375 89954142 TTTCGACCAAACTGGTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000084281,ENSRNOT00000017927 1 3 3 97 4 100277813 100277831 ATTTATCCAGCTGGCAGAG 57 100277890 100280588 CAGCATCAAGAATGCAAAGAG 58 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 2 2 2 80 3 161416520 161416539 CCATGTATCACTACCACGAG 58 161416582 161417389 TAGAGCCACGACCATACAG 59 NA Rattus norvegicus 81 Zbtb7c ENSRNOG00000047924 ENSRNOT00000072519 1 1 1 221 18 72452906 72452924 CTCAACTTCCTGAGTGCCA 60 72453109 72459927 CTTCAGTTTGTCCTGCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Psmd8 ENSRNOG00000037580 ENSRNOT00000027937 3 1 1 80 1 88119307 88119325 GCTAAGGGAAACATTCCCG 59 88118105 88119263 TCCTGCAATTTCATCCCTG 58 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925,ENSRNOT00000026009,ENSRNOT00000078789 2 3 3 80 1 143185733 143196324 ACAGTCAGTATTAAGCATGCTC 59 143185674 143185692 GGATCCAGAGACAGGAAGC 60 NA Rattus norvegicus 81 Hist1h2bl ENSRNOG00000059382 ENSRNOT00000072195 2 1 1 61 17 44738116 44738134 TCGTGAACGACATCTTCGA 59 44738073 44738091 CTTGTTGTAATGCGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC94199 ENSRNOG00000049287 ENSRNOT00000070963 2 1 1 83 5 23372112 23372131 GTGACTTCCAGATAGTGAGC 58 23372176 23376273 ATTCTGGCATGTTGTTTCTG 57 NA Rattus norvegicus 81 Kcne4 ENSRNOG00000048478 ENSRNOT00000072242 2 1 1 118 9 84689186 84689764 ACTGTCAGCCTTTGATCCC 60 84689845 84689864 TAGACACATGGGACTCAAGG 59 NA InUTR Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090,ENSRNOT00000085684 2 2 2 80 7 40272377 40273622 GAAACTACCAAATTACGGCTCC 60 40273661 40273681 ATGCCTTAAGTCCTCTACCTC 59 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000059748 ENSRNOT00000077571 2 1 1 124 17 44794235 44794253 CGTAAGGGCAACTATTCGG 58 44794341 44794359 GTCTTCTTGTTGTCCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd2 ENSRNOG00000018788 ENSRNOT00000025391 1 1 1 80 7 11937958 11937978 ATGGCTACTACTTCCACTGAG 59 11938018 11938716 TGAGTACAGGAACTTGAGCAG 60 NA Rattus norvegicus 81 LOC100909831 ENSRNOG00000054293 ENSRNOT00000074870 1 1 1 60 3 73635787 73635807 GTGGTTATCGTCTTCTATGGT 57 73635747 73635765 AGTGACTTGATTTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000076379 3 2 4 115 2 208577002 208577020 ATCTTCGCAGACAATGCTG 59 208573778 208573796 GAAAGACCCTTGTTGCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Plxdc2 ENSRNOG00000000142 ENSRNOT00000000155 3 1 1 80 17 83574105 83574123 CAATTCAGGGTCCTGACCA 59 83574164 83575455 CTTCGTATCATCTTCTGTAGGC 59 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 3 1 1 66 20 14595034 14618792 TATGAGGACAACCAGACGAG 59 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Cox8b ENSRNOG00000014656 ENSRNOT00000019679 2 1 1 80 1 213648931 213650091 ACTTCTGCCATGGATCAGG 60 213648869 213648888 GTGGGATAAGACCCATCCTG 60 NA Rattus norvegicus 81 Emc4 ENSRNOG00000005719 ENSRNOT00000007612 3 1 1 80 3 103853724 103853744 CATCTTCCCTACCATGATGGT 59 103853476 103853685 ATCTTGAAAGTGGCTGAAATGG 60 NA Rattus norvegicus 81 Hk1 ENSRNOG00000046891 ENSRNOT00000072429 3 1 1 80 20 31938189 31941043 ATAGATGAGGCTGTACTGATCAC 60 31938131 31938149 CAGCAACTTGACCACATCC 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000002793,ENSRNOT00000067439 2 3 3 80 14 25899922 25909295 CAAGCCTAATATGGCGGTG 59 25909339 25909357 TGTGCCCGTTATGAAAGTG 59 NA Rattus norvegicus 81 Prkch ENSRNOG00000004873 ENSRNOT00000006729 2 1 1 80 6 96592907 96595114 CAACCTCGAAACTCATTTCC 57 96595157 96595175 TAACACCGATCCCATTTCC 57 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 2 2 2 80 15 4002823 4002841 TTCTCGTGAACTGGATCGA 59 4002883 4003030 GTCATAAAGACACTGATCGGA 58 NA Rattus norvegicus 81 Med7 ENSRNOG00000007053 ENSRNOT00000009238 3 1 1 80 10 31535055 31535462 GGTCTTAGGTTCTTGATTGTCC 59 31535502 31535521 TTGATGTACTGCATTGGAGG 58 NA InUTR Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 1 2 2 80 3 97892548 97895053 GAATTCACGAAGGGTATGGC 59 97895095 97895114 GTTGGAAGCTGACTGTACAG 59 NA Rattus norvegicus 81 H2afy2 ENSRNOG00000024751 ENSRNOT00000033529 2 1 1 81 20 31376839 31376857 TTTCAAGTACCGGATCAGC 58 31372729 31376795 CAACTCTAGGATTTCCGCTG 59 NA Rattus norvegicus 81 Il21r ENSRNOG00000015773 ENSRNOT00000021690 3 1 1 80 1 197016309 197016327 ACTACCTCTGGACCATCAC 58 197016371 197017848 ATTCATCTTGCCAGGTGAG 58 NA Rattus norvegicus 81 MGC94199 ENSRNOG00000026672 ENSRNOT00000037547 3 1 1 84 5 24159469 24159487 TGTAGCCTGTGACTTCCAG 59 24159532 24164036 CATGTTGTTTCTGAAGAACAGG 58 NA Rattus norvegicus 81 Snrpb2 ENSRNOG00000004967 ENSRNOT00000006900 3 1 1 82 3 137144207 137144225 AAACAAGAAGCCTGGTCAG 58 137145250 137146702 GGTAATCAGGGACCTGAGG 59 NA Rattus norvegicus 81 Glrx5 ENSRNOG00000004206 ENSRNOT00000005781 1 1 1 94 6 128751101 128759062 GAGGCAAGGTATTAAAGACTATTCC 60 128759113 128759132 TCTGCAGAAGGATGTCACAG 60 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773,ENSRNOT00000014060 2 2 2 80 3 2451101 2451270 ATCATCCAGCTGGATAGCA 58 2451039 2451057 ACACCAGTGCTTAATCAGG 58 NA Rattus norvegicus 81 Oma1 ENSRNOG00000007214 ENSRNOT00000009516 2 1 1 80 5 122855326 122858342 GGAATATGAAGTGTGGATGGA 58 122858384 122858402 ACCTTCTTGACAGTCAGGT 58 NA Rattus norvegicus 81 Gabrg3 ENSRNOG00000014862 ENSRNOT00000019971 2 1 1 80 1 112253571 112435013 TTCTCTAGCTATGGCTACCC 58 112253510 112253528 TGATTTCTGATCAGCTGCC 58 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933,ENSRNOT00000088121 2 2 2 80 1 190326420 190326439 GTGCTTACTTACTGGCTCTC 58 190326481 190335402 GAATATGCCCAGCAGTACAC 59 NA Rattus norvegicus 81 RGD1307391 ENSRNOG00000001439 ENSRNOT00000001957 1 1 1 80 12 23874943 23876108 ACGATACAGATCGAGAAGCC 60 23874224 23874243 CCTGGAGACTCAGTATGAGG 59 NA Rattus norvegicus 81 RGD1307391 ENSRNOG00000001439 ENSRNOT00000001957 3 1 1 80 12 23876257 23876277 GAAGTGTGAAGAAACACCGTC 60 23874937 23876102 TCTTGAGGCTTCTCGATCTG 59 NA Rattus norvegicus 81 Rnf183 ENSRNOG00000014861 ENSRNOT00000019924 1 1 1 60 5 78284954 78284974 ATCTTTGCCTATCTGATGGCT 59 78284914 78284935 AGATGGAGAAGATGAGAAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360647 ENSRNOG00000020982 ENSRNOT00000028481 3 1 1 119 1 221420833 221420851 GATCAAGTCGTGCTTCTGG 59 221420933 221421445 ATGAACTTTACCTCCCAGCA 59 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814,ENSRNOT00000082412 1 2 2 80 1 264692422 264692440 CACAAGGCTTCCTTACCAC 59 264692484 264702490 CCGACATCATCCGAAACAG 59 NA Rattus norvegicus 81 Rn60_10_0645.1 ENSRNOG00000029091 ENSRNOT00000050325 2 1 1 60 10 67250566 67250586 TCTGATATTCAGGCGAAAGAG 58 67250607 67250626 GACCAAGGGTTGAGAATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1625 ENSRNOG00000012491 ENSRNOT00000016643 1 1 1 60 15 26804497 26804520 GGGCAACATCCTTATTATAGTCAC 60 26804460 26804479 GTACATGGGAGAATGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo3a ENSRNOG00000018478 ENSRNOT00000025053 3 1 1 80 17 89018334 89018353 CTGCAGAAACAACTCATGGA 59 89018395 89031185 ATGAATTCGTTCATGCCTGG 59 NA Rattus norvegicus 81 Prkci ENSRNOG00000009652 ENSRNOT00000012924 2 1 1 80 2 115950345 115950363 AGAAGCAGATTCGCATACC 58 115948750 115950301 CCTTTGGGTCCTTGTTGAG 58 NA Rattus norvegicus 81 Fam110b ENSRNOG00000009114 ENSRNOT00000012066 1 1 1 60 5 18902086 18902106 TTGAGTGACAGGTATTTCCGA 59 18902126 18902146 GTCCACAGTAGTTGAAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 3 3 3 81 13 85398134 85398154 ACTCAAAGAAATCACCGAAGG 59 85397249 85398091 GACTGTCTCCTCTTTCCGT 59 NA Rattus norvegicus 81 Aass ENSRNOG00000039494 ENSRNOT00000060530 1 1 1 80 4 50168523 50171257 GGAAAGCAGAGAACGAATCC 59 50168462 50168481 CCAGATACATAGCCAGACCC 60 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 1 2 2 80 1 56289285 56299798 GAACTGCAAAGATGTGTCCA 59 56299841 56299859 AACACTTGCTGGAACTCCT 59 NA Rattus norvegicus 81 Trmt2a ENSRNOG00000001885 ENSRNOT00000046183 1 1 1 80 11 86887565 86887657 AGGAGGGACAGAGAAAGAC 58 86887503 86887521 GGTCTTCCTGAATGCACTG 59 NA Rattus norvegicus 81 Spaca4 ENSRNOG00000021037 ENSRNOT00000028558 1 1 1 60 1 101708040 101708058 TCTGGTGTTGGTTCTTTGC 59 101707998 101708016 CAGCTCACAGAAGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsa ENSRNOG00000015857 ENSRNOT00000066028 3 1 1 80 3 161303048 161303066 GGTGAACTTACAGTACCGC 58 161303108 161303686 ATCTGGTATTTCTGTGAGCTG 58 NA Rattus norvegicus 81 LOC100909521 ENSRNOG00000001416 ENSRNOT00000041808 2 1 1 80 12 22679941 22680084 TTTCTCTTCGGAGTCTCTGG 59 22679880 22679900 TAGAAGGAAGCAGAAGAGGAC 59 NA InUTR Rattus norvegicus 81 LOC100909521 ENSRNOG00000001416 ENSRNOT00000041808 3 1 1 80 12 22679941 22680083 TTCTCTTCGGAGTCTCTGG 58 22679879 22679898 GTAGAAGGAAGCAGAAGAGG 57 NA InUTR Rattus norvegicus 81 Slc25a41 ENSRNOG00000048853 ENSRNOT00000074117 2 1 1 80 9 10007598 10007617 GCAATGGTATAAACGTGCTC 58 10007659 10007786 AGAAGAAATTCCTGGACTGC 58 NA Rattus norvegicus 81 Fam129b ENSRNOG00000015845 ENSRNOT00000021689 3 1 1 80 3 11956203 11956223 AATAAGAAGTGGAGAAACCGC 59 11956263 11957579 CTCATAGGCCACTTTGTTCTC 59 NA Rattus norvegicus 81 Sephs2 ENSRNOG00000048397 ENSRNOT00000074114 2 1 1 133 1 198721089 198721107 GAGTTTCTCCAACTACCGG 58 198720971 198720989 GTCCCTCCAGGAGTTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537,ENSRNOT00000085877 1 2 2 81 20 31461744 31461762 CTCTAGAGGGCCTAAAGGG 58 31458346 31461700 TAAGCCATCTTCTCCCAGTG 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 3 2 2 80 4 55813976 55816070 CATGAGAGCCAATAACCCA 57 55816114 55816132 CTCCACATCCCTTTCTTCG 58 NA Rattus norvegicus 81 Serpina6 ENSRNOG00000009438 ENSRNOT00000012500 2 1 1 80 6 127531086 127531107 AATTGAGCATGTGTTCTCAGAC 59 127529102 127531045 TCCCATATGCCTCTGAGGA 60 NA Rattus norvegicus 81 Slc23a3 ENSRNOG00000018266 ENSRNOT00000024667 1 1 1 80 9 82328645 82328986 CTATATCTGGTACACGGATTGAG 58 82328587 82328606 GAAGCATTTGCGTTTCTTGG 59 NA Rattus norvegicus 81 Shh ENSRNOG00000006120 ENSRNOT00000008497 2 1 1 83 4 722213 727086 CTGATGACTCAGAGGTGCA 59 722148 722166 CACTCGAAGCTTCACTCCA 60 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950,ENSRNOT00000017323 3 2 2 80 4 120295802 120298575 CTCAGAACTCATTGAGCTTCTG 59 120295743 120295763 TCCACAGACATAAGGAATGGT 59 NA Rattus norvegicus 81 Atp8b3 ENSRNOG00000024975 ENSRNOT00000039813 3 1 1 80 7 12054152 12054171 GGGAAGAAAGGGTCTACCAG 60 12054213 12054318 GGTTTCGGACTAACACTGAC 59 NA Rattus norvegicus 81 RGD1305587 ENSRNOG00000000551 ENSRNOT00000000662 3 1 1 124 20 31735990 31736008 AACAGAGGAATAGCAGCCC 60 31735088 31735106 ACTGAAAGGAGATTGGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 2 2 2 80 1 273727102 273728657 GATTATACAGGCATCTCGTGGA 60 273727043 273727061 CACAAACCACACGATGCTC 60 NA Rattus norvegicus 81 Zcchc17 ENSRNOG00000012266 ENSRNOT00000017156 3 1 1 85 5 148566567 148571325 CAAGGAGAGGTTGCTATGGT 60 148556009 148556027 TGAGTTCGATGGACCAGAC 59 NA Rattus norvegicus 81 Olr436 ENSRNOG00000032273 ENSRNOT00000040012 2 1 1 60 3 72739984 72740004 TGCCATCAATCACTTCTTCTG 59 72739944 72739963 AATACTGGAGCACGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp319 ENSRNOG00000013460 ENSRNOT00000017971 2 1 1 81 19 10119445 10119463 TGGAGCCGGAATAAAGAGG 59 10119507 10121257 GTAATCGATTCTGCTCCAGG 58 NA InUTR Rattus norvegicus 81 Olr1232 ENSRNOG00000060071 ENSRNOT00000088564 2 1 1 60 4 1436781 1436801 TTATTTCTGTGACCTCCTCCC 59 1436822 1436841 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 2 1 1 61 3 61686332 61686352 ACTTTCGAGTGGATGAAAGTG 59 61686374 61686703 CCATATTCGGACAGTTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 2 2 2 81 16 24586316 24588410 AACTCAAACAGGACAGAGGA 59 24584351 24584370 TCATCACTGAAATCCAAGGC 58 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 1 2 2 80 X 124895863 124895881 CCAGGTATTGAACCATGGC 59 124895923 124896426 TTCTATGTGTTCATGGCATCG 59 NA Rattus norvegicus 81 RGD1564664 ENSRNOG00000055564 ENSRNOT00000088555 3 1 1 95 3 82855481 82855499 AGAAGTCGTTCCTGCAGAG 59 82855404 82855422 TGTTCCTCAGTTTGCAGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pygo1 ENSRNOG00000051813 ENSRNOT00000087114 3 1 1 91 8 79622282 79622300 TGGACTGGATGGGTTAGGA 60 79622355 79624085 GAGGAAAGGAAGCTCCCTG 60 NA Rattus norvegicus 81 Htatip2 ENSRNOG00000022189 ENSRNOT00000036258 2 1 1 80 1 105094984 105095004 TTCCAAAGTAACGCTCATTGG 59 105095045 105097615 TCCACCACCTCTTGATTCAC 60 NA Rattus norvegicus 81 Rn60_10_0694.1 ENSRNOG00000057272 ENSRNOT00000087601 3 1 1 60 10 69732707 69732727 TGGAAGTCCAATATGAAGGTG 58 69732667 69732685 GAAGACATCCATCTGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc93a ENSRNOG00000047027 ENSRNOT00000073581 3 1 1 81 1 53580950 53582279 GAGTATACCAAGTCTTATGTGACCT 60 53580893 53580911 CAGTCATAGCCGAGAAGCA 60 NA Rattus norvegicus 81 Nav3 ENSRNOG00000052157 ENSRNOT00000082100 3 1 1 80 7 52318388 52335396 AGCTATCTGGTGAAGACCC 59 52318326 52318345 TCTCTTCCAAGTTCTGCCTC 60 NA Rattus norvegicus 81 Suox ENSRNOG00000005987 ENSRNOT00000008018 2 1 1 100 7 3100380 3100400 ATGATAACTCAAGGACTCGGG 59 3100121 3100318 CTCCTGAGAAGCCCTACAC 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473,ENSRNOT00000012397 2 2 2 80 4 152214465 152214485 AGAAGGAGACACATCTAACCA 58 152149592 152214425 GAGCTTCTTGTTTCATCTCCA 58 NA Rattus norvegicus 81 Olr869 ENSRNOG00000048408 ENSRNOT00000048274 2 1 1 60 5 137927633 137927653 GGATCTGTGGTTTCTCTTCCT 60 137927593 137927611 CAATAGGGCAGACTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 2 2 2 81 10 49191267 49191286 CTACGATTCGGAAGATGGGA 59 49188369 49191223 TCTGGTTTCCACGTCTGAG 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155,ENSRNOT00000022731 2 2 2 82 2 208622389 208622936 GTTATGCAGCAACAGATTGGA 59 208622327 208622345 GGCTCCAATAGCATAGCCT 59 NA Rattus norvegicus 81 RT1-T24-2 ENSRNOG00000000787 ENSRNOT00000061299 1 1 1 103 20 3248595 3248919 TTTACCCGAACTGACCCTC 59 3248986 3249004 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Slc27a5 ENSRNOG00000019626 ENSRNOT00000026575 1 1 1 80 1 65577321 65577831 CTGATTGTGGATCCAGACCT 59 65577870 65577892 GTAGAAGCATCGAATGTTCTCAG 60 NA Rattus norvegicus 81 Pcdhgb6 ENSRNOG00000039455 ENSRNOT00000060466 1 1 1 60 18 30892073 30892093 ACAAGTTAGTAACCGATGGAG 58 30892113 30892133 ATGGTGACATTATACTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 2 2 2 80 8 55045945 55045967 GAGAACTAGAGAAGCAAATGGAG 59 55044509 55045906 TTCTCATCCGACTTGAGCTG 60 NA Rattus norvegicus 81 Fezf1 ENSRNOG00000007608 ENSRNOT00000010019 2 1 1 126 4 50311618 50311637 TTACATGAAAGAAAGCGCCC 59 50311264 50311531 ATTAAAGACCTTTCCGCAGAC 59 NA Rattus norvegicus 81 Gprc6a ENSRNOG00000000401 ENSRNOT00000000451 2 1 1 80 20 32619433 32619451 ATAGGTGCTGGCTACTCTG 59 32618945 32619390 TTCATAACTCACCTGTGGCA 59 NA Rattus norvegicus 81 Cacna1i ENSRNOG00000060407 ENSRNOT00000084352 3 1 1 80 7 121578522 121581075 ATTCTGCTCATCATAGTGGG 57 121581118 121581136 CTTGGTCTCAGAGAACTGG 57 NA Rattus norvegicus 81 LOC100911932 ENSRNOG00000050278 ENSRNOT00000074361 1 1 1 60 1 220363054 220363073 GGTGGCTTTGAGTGTTACTG 59 220363094 220363114 TACAACTGATACCATCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072262.1 ENSRNOG00000060328 ENSRNOT00000075455 1 1 1 80 11 85561526 85561667 ACTTAACAGGGTCATGTGC 58 85561711 85561729 ACAGTTTGACTGTGCTTCC 58 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012,ENSRNOT00000008003 1 2 2 80 4 161692375 161693314 ACCAAGTGTTTAAGCCACTG 59 161693886 161693904 CAGGATTGGGTCGTTTCTG 59 NA Rattus norvegicus 81 Marf1 ENSRNOG00000056248 ENSRNOT00000091520 2 1 1 80 10 935741 936510 TCATGTGTTGCAGATTCTTGG 59 936552 936570 TGAGTAAAGCGCTTCACCT 59 NA Rattus norvegicus 81 Dnajc2 ENSRNOG00000012392 ENSRNOT00000016909 2 1 1 81 4 9896418 9898214 GCAGAATGTCGTGATGAGAG 59 9898255 9898276 TGTTCATCTCTTCCTTCTTCCT 59 NA Rattus norvegicus 81 Tubb3 ENSRNOG00000017209 ENSRNOT00000023452 2 1 1 86 19 56226777 56228388 TTATCTTCGGTCAGAGTGGTG 60 56228436 56228454 CATCCAGGACTGAGTCCAC 60 NA Rattus norvegicus 81 Car13 ENSRNOG00000021323 ENSRNOT00000038546 3 1 1 81 2 88284215 88290537 ATCAGCTCTCAACAGTTGG 58 88284152 88284171 GATTGCTTAACAGGAAAGCC 58 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138,ENSRNOT00000041140 3 2 2 80 10 71616527 71619070 CACGCTAAACAGAATGTCCT 58 71619113 71619131 AACAGAACATCGCTGACAC 59 NA Rattus norvegicus 81 Tmcc2 ENSRNOG00000000033 ENSRNOT00000000036 1 1 1 80 13 49135267 49136564 GAGCGCTACAGGTATGAGAG 60 49135206 49135229 CTTTAGGTTGGTCATCTCATTCTG 60 NA Rattus norvegicus 81 Hspb1 ENSRNOG00000023546 ENSRNOT00000031555 1 1 1 118 12 23839695 23839824 AAATACACGCTCCCTCCAG 60 23839595 23839613 GTGATCTCCGCTGATTGTG 59 NA Rattus norvegicus 81 Tll1 ENSRNOG00000033528 ENSRNOT00000065642 1 1 1 80 16 27532689 27532708 ACAAGAGTAGTTTGTGCTGG 58 27532749 27535592 AGAATCTACCAAGGAGAGGTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 3 5 9 80 9 81535501 81535519 CAATTCCAAGAAGAGGGCA 58 81535561 81537210 AGATTCCACATACATGGTCTC 57 NA Rattus norvegicus 81 Mc4r ENSRNOG00000018692 ENSRNOT00000025223 2 1 1 60 18 62614116 62614137 GAGAACATTCTAGTGATCGTGG 59 62614077 62614095 AGTACATGGGTGAGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 2 2 2 80 7 125230555 125230573 AAGAGCGCCATCAATTCTC 58 125230616 125232681 CTCCTCATTCTCCTCTAGCT 58 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587,ENSRNOT00000031236 3 2 2 80 1 91691264 91691284 ATAGAGCAGTTGGAGATCCAG 59 91691323 91694832 TTTAGTCAGCTTAGAAACGTCC 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 3 1 3 80 14 34557031 34557984 CTCAGGAGAAATAAGAAAGGTGTG 60 34556974 34556994 AGAAGACACATACTCGAACCA 59 NA Rattus norvegicus 81 Pdzd2 ENSRNOG00000013140 ENSRNOT00000017937 1 1 1 80 2 62429577 62438855 ACACCCTAATCCAAAGGTCTC 60 62429517 62429535 TTGGCTTCTCTGCTTTCCT 59 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 1 2 2 80 7 66881596 66881616 CATGACCTGAAGGTTCATGAC 59 66863057 66881556 GAGATCGTAGACTCTGACCTC 59 NA Rattus norvegicus 81 Mir196c ENSRNOG00000035510 ENSRNOT00000053633 3 1 1 60 10 84113590 84113609 GGTAGTTTCGTGTTGTTGGG 60 84113632 84113650 TGAATCAGGTGGTTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500948 ENSRNOG00000031660 ENSRNOT00000041021 1 1 1 80 8 16335260 16335280 GGAAATGTTCACATTCATGGG 58 16334290 16335219 TCCATCTCCTACTCAGTGTC 58 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350,ENSRNOT00000072663 2 2 2 80 3 148427545 148428275 TGACCAAGGTACTTCCTGG 59 148426019 148426037 TGATCTTATTCCGGCCCAG 59 NA Rattus norvegicus 81 LOC688672 ENSRNOG00000046740 ENSRNOT00000071997 1 1 1 82 6 80023475 80023493 TTGCTGAGAAGATGCATGC 59 80023538 80023559 CCTCATGATGTCTCGTTCCT 59 NA Rattus norvegicus 81 LOC688672 ENSRNOG00000046740 ENSRNOT00000071997 3 1 1 85 6 80023475 80023493 TTGCTGAGAAGATGCATGC 59 80023542 80023562 CTCCCTCATGATGTCTCGT 59 NA Rattus norvegicus 81 Pnn ENSRNOG00000004061 ENSRNOT00000005439 3 1 1 81 6 80160141 80160159 CATCCAAGCCAGATTGCTG 59 80160204 80160544 TGAGAATCCACGCCTTAGC 60 NA Rattus norvegicus 81 Wdr25 ENSRNOG00000004733 ENSRNOT00000006281 3 1 1 85 6 132807011 132807029 AACAGCATTCAGTGGTGTC 58 132807078 132887301 GCATTCCACACCTTGAAGG 59 NA Rattus norvegicus 81 AABR07068042.1 ENSRNOG00000037894 ENSRNOT00000057584 2 1 1 199 9 78969040 78969058 ATATGGGACAGTCCCTTCC 58 78969222 78972832 GTTACATCATTCTGGCGGG 59 NA Rattus norvegicus 81 RT1-T24-1 ENSRNOG00000032596 ENSRNOT00000041502 3 1 1 105 20 3281458 3281786 ACTTTACCCGAACTGACCC 59 3281855 3281873 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Msrb2 ENSRNOG00000016873 ENSRNOT00000022661 1 1 1 84 17 86073297 86078635 GAACTGAAGCGCCTTTCAG 60 86078683 86078701 AAGAGTGGGCTATCACAGC 60 NA Rattus norvegicus 81 Spon2 ENSRNOG00000046246 ENSRNOT00000075130 2 1 1 91 14 82869025 82869628 GTGACTGAGATAACCGCCT 59 82869683 82869701 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 Hist1h1b ENSRNOG00000060355 ENSRNOT00000091688 1 1 1 60 17 44766522 44766542 CGATGTGGAGAAGAACAACAG 59 44766564 44766582 ACCTTTGCTCACCAAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 3 2 2 80 2 197964209 197964229 GAGGTAGAAGAGGAACCAGAG 59 197963070 197964168 CTGTTTGATCTGGAGCTTCG 59 NA Rattus norvegicus 81 Olr321 ENSRNOG00000021065 ENSRNOT00000028599 3 1 1 60 1 228475248 228475270 GGAGTTGAGAAATAACACCAGAG 59 228475210 228475228 TTGCGATTGAGTTAGACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ep300 ENSRNOG00000000190 ENSRNOT00000000206 2 1 1 80 7 122849478 122852259 TCCATGAACAACATGAGTGC 59 122852300 122852320 GGAGTCAGAAAGAAGATTCGG 59 NA Rattus norvegicus 81 Slc35d1 ENSRNOG00000022967 ENSRNOT00000032126 2 1 1 80 5 122717658 122717676 ATCGGAATGGTCTTTGGTG 58 122702506 122717614 CAGGCTTCCAGCAATACTG 59 NA Rattus norvegicus 81 Iqck ENSRNOG00000036758 ENSRNOT00000055096 2 1 1 89 1 188594193 188594213 TTATCTTTCCAGTTCTGCTCC 58 188594261 188619910 TGAATTTGGTTCTCTTCCTCTC 58 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 1 2 2 80 10 86981068 86982670 ATCCCACAGAAAGAACTGG 57 86981006 86981025 GGATATCTTCAGGCAAGAGG 58 NA Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980,ENSRNOT00000081254 3 2 2 101 20 25990832 25990853 CGACCTTTGAACAATACAAAGG 58 25991238 25991258 AGCATAGTCAGTAAGACAGTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 3 2 2 83 12 24149027 24149045 ATTAGCTACCAGTTGGCCA 59 24151421 24151440 CGTACAGATCTTATGGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07014974.1 ENSRNOG00000052298 ENSRNOT00000063985 1 1 1 80 14 42007356 42007377 TGATCAAGAGGAAGTGAGAACC 60 42007418 42008919 TTTGCAGTACTGACGTGGT 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669,ENSRNOT00000087957 2 2 4 80 1 64011623 64011717 CAGAAGAGGTCAAACCCAG 58 64011990 64012010 ACCATCCTTAGTTTCCATGTC 58 NA Rattus norvegicus 81 Npap60 ENSRNOG00000024560 ENSRNOT00000039549 2 1 1 117 4 128264557 128264814 TAGTGCAGGACACTAAGTTAGAC 60 128264462 128264480 AGTGGTGGATTGGGTACAC 59 NA Rattus norvegicus 81 Ms4a6a ENSRNOG00000020991 ENSRNOT00000033795 1 1 1 80 1 227923909 227926578 ATGACTAAGCCTTTGGTTCAG 58 227923849 227923871 GAGTATAACAAGGCCTATGAGAG 58 NA Rattus norvegicus 81 LOC685963 ENSRNOG00000048701 ENSRNOT00000044141 3 1 1 60 3 164002575 164002594 GTAAAGTTCAAGGTCCGCTG 59 164002615 164002635 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2h4 ENSRNOG00000000831 ENSRNOT00000083556 1 1 1 80 20 3587443 3587586 GTGATGCTCAAACAGACTCC 59 3587629 3587647 AAGTCTGTCCCTTTCCAGC 60 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195,ENSRNOT00000084737 2 2 2 80 5 159693113 159693131 AAACATTCAGTGGGAGAGC 58 159693175 159702402 TAATAGCATGCACTGTGGG 58 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671,ENSRNOT00000078956 1 2 2 80 4 100769457 100779742 ATCAACAGAAGTGATTTGTCCC 59 100769398 100769416 TGAGCTGCAAAGTCATCTG 58 NA Rattus norvegicus 81 Zfp579 ENSRNOG00000016608 ENSRNOT00000022349 1 1 1 210 1 72399210 72399228 AGGGAAGGAAGAAAGGAGC 59 72400430 72400448 GTAAGGGAAGCGGAAGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC681385 ENSRNOG00000043494 ENSRNOT00000067576 2 1 1 80 3 5280426 5280671 GAACACTTTCATGTCTGGTGG 60 5280366 5280388 TTACTATATTGACCAGGCTCCTC 59 NA Rattus norvegicus 81 Kcnmb3 ENSRNOG00000027836 ENSRNOT00000058860 2 1 1 168 2 118874814 118874833 GGCATAAGCAATGGAGATCC 59 118870406 118874683 CTTCTCTGGGAGAGCTGAG 59 NA Rattus norvegicus 81 Olr1608 ENSRNOG00000012522 ENSRNOT00000016693 3 1 1 60 15 27000977 27000995 TTCACTCCCATTCTGAACC 57 27000935 27000954 TGGCTGAATTTACTTCGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps16 ENSRNOG00000006898 ENSRNOT00000009207 1 1 1 165 15 4352587 4352606 TAGTTGCTCTCAACCTGGAC 60 4353515 4353535 AAGAAGACTTCTCTTGCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Fbxl22 ENSRNOG00000017684 ENSRNOT00000023810 3 1 1 88 8 72204346 72204364 TGATTTCCTCCTGCAGGTG 60 72202048 72202066 CTAAGCAGTCATCCGTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr39 ENSRNOG00000030042 ENSRNOT00000050707 1 1 1 60 1 167588239 167588257 ACCGCTATGTGGCTATCTG 59 167588197 167588219 AGTAACTGTCCTGTCACTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr39 ENSRNOG00000030042 ENSRNOT00000050707 2 1 1 60 1 167588397 167588417 GCTATCAATATCTGTGCTGCC 59 167588357 167588375 TCGTGGAGAAGCTGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 3 2 2 80 15 34457516 34457769 AGCATCCCATACTCCATGC 60 34457454 34457474 CTTCAGTTCGAAGCTCATGTG 60 NA Rattus norvegicus 81 AABR07051583.1 ENSRNOG00000050066 ENSRNOT00000050825 1 1 1 81 3 17546607 17546992 GATTCTGGGAACCAATGGTG 59 17547036 17547054 GATGGAGACCGATTGTCCA 59 NA Rattus norvegicus 81 Mocs3 ENSRNOG00000025067 ENSRNOT00000039403 2 1 1 60 3 164987499 164987517 GCCTCAAGTAGAGGTGGAC 60 164987540 164987559 CAGACTCAAAGGGATGTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps17l ENSRNOG00000048585 ENSRNOT00000036340 3 1 1 60 15 49009240 49009260 ATCATTGAGGTAGATCCCAGC 60 49009282 49009300 AGAGACTGCCAAAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910867 ENSRNOG00000006114 ENSRNOT00000009264 1 1 1 80 4 25592173 25592194 CCTTAGAAATCCAGTCTGACAC 59 25592234 25594353 TTCCGAACATTTCCTTCCTC 58 NA Rattus norvegicus 81 Aanat ENSRNOG00000011182 ENSRNOT00000015221 3 1 1 117 10 105569876 105569894 CTCAGAGTTCCTAGGCTGC 60 105569974 105570863 GACTGAGATAAAGGCTTCGC 59 NA Rattus norvegicus 81 Oxa1l ENSRNOG00000009713 ENSRNOT00000013246 2 1 1 81 15 33012089 33012107 TGAAATTGCACATCGGCTC 59 33012152 33012252 CTGTCGTAAGGGTCCTCTG 59 NA Rattus norvegicus 81 Spcs1 ENSRNOG00000018075 ENSRNOT00000024447 1 1 1 80 16 7080772 7081245 TTCTCGTGTTTGCTGACAC 59 7080710 7080728 GCCTGAGTCTTGAACAGGT 60 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 1 2 2 80 12 23604898 23605367 AAAGGAAGAGCTGGACCTG 59 23604836 23604857 GTTCTGTGGATAAACAGTGGTC 59 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 2 2 2 80 6 28331666 28332013 GCCAGAACTGTAAGAACTGC 59 28332055 28332074 AGCAGATGGTACAGTAGGAC 59 NA Rattus norvegicus 81 Gabpb1 ENSRNOG00000010659 ENSRNOT00000045443 2 1 1 80 3 119113902 119113921 ACACTGTGACAATACATGCT 58 119113522 119113861 CTCCTGTTTCATCTGTAAGGT 58 NA Rattus norvegicus 81 Vom1r27 ENSRNOG00000049847 ENSRNOT00000072292 3 1 1 60 1 68529468 68529488 AAGTACTGTTCTACTGGAGGG 59 68529505 68529528 CCACTAATGATGTATAGAGTACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl37-ps1 ENSRNOG00000048958 ENSRNOT00000043523 3 1 1 60 17 87020283 87020302 GCACCTAAAGATCGTCTACC 58 87020323 87020343 TTTAGGTGTTGTTCCTTCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ehd1 ENSRNOG00000043503 ENSRNOT00000054830 3 1 1 81 1 221645333 221649107 TTCCTCAACAGGTTCATGTG 58 221649151 221649169 ACAGGATTCCAGGAGTGTC 59 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380,ENSRNOT00000090265 2 2 2 80 18 77520658 77520677 AGCTAGGATAACACGGAGAG 58 77515660 77520616 TCACAGCAACTTGTACAGAG 58 NA Rattus norvegicus 81 Olr1621 ENSRNOG00000008800 ENSRNOT00000011632 1 1 1 60 15 27422435 27422453 TTTGTATCTGCTGGGTGAG 57 27422476 27422495 TGGGAGATGAGGATAATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam151a ENSRNOG00000007799 ENSRNOT00000010288 3 1 1 80 5 126341627 126341645 CCTCCAGCCATCTACAGTG 60 126341688 126342554 CAGTTTGATGCCCTTCTGAG 59 NA Rattus norvegicus 81 Chst3 ENSRNOG00000000572 ENSRNOT00000000697 1 1 1 88 20 29737141 29738277 CATATCCAGGGTCTCCGAC 59 29737071 29737089 TTTCCGATAAGAGCAGGGC 60 NA Rattus norvegicus 81 Olr360 ENSRNOG00000013077 ENSRNOT00000017444 1 1 1 60 1 230115250 230115272 TCACCTTCTTCCTCATCTATACC 59 230115212 230115231 ATCAACAGGATCAAACCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr360 ENSRNOG00000013077 ENSRNOT00000017444 3 1 1 60 1 230115250 230115271 CACCTTCTTCCTCATCTATACC 58 230115211 230115231 AATCAACAGGATCAAACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apold1 ENSRNOG00000007830 ENSRNOT00000010289 3 1 1 60 4 168752726 168752747 CAAGATTCAGAAACTGTCTGAG 57 168752768 168752786 ACTAAGTTCATCCAGGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim50 ENSRNOG00000022483 ENSRNOT00000032250 3 1 1 81 12 24353100 24358500 CCGGATTATTAATGAGTCTGACG 59 24353041 24353059 CTCTTCATCCACCAGGTGG 60 NA Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 1 2 2 124 18 2425170 2425192 GGCTTTATATGAAACTCCATGGG 60 2426447 2426552 AACAGAGCTGTTACCGGAG 59 NA Rattus norvegicus 81 Lgals12 ENSRNOG00000021207 ENSRNOT00000059154 2 1 1 80 1 222897891 222898909 AGAGGTGAAGGTGAGTGTG 59 222897829 222897847 TCAAGAGTATCCACCCGTG 59 NA Rattus norvegicus 81 Btbd18 ENSRNOG00000043106 ENSRNOT00000066606 2 1 1 113 3 72063564 72063582 TTTCTGCAGCTTCATCACC 59 72067515 72067533 GAAGGGACTACAGGCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Swi5 ENSRNOG00000022860 ENSRNOT00000030558 2 1 1 82 3 11310983 11311005 CTGACATTCAGAAACTGAAGGAG 60 11309704 11310941 AATCACACGATAGCCCTCG 60 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 1 2 2 80 20 32067887 32067906 GGCTGTGATCGATGAAATCC 59 32066334 32067844 GCACAGAGTCCTAGCAGAG 60 NA Rattus norvegicus 81 Usp11 ENSRNOG00000009049 ENSRNOT00000051956 1 1 1 80 X 1690360 1690571 TGAGAAAGGTGATGAGAATGAG 58 1690301 1690319 GGTCCAGACATTTCCTCCT 59 NA Rattus norvegicus 81 Fkbp6 ENSRNOG00000001451 ENSRNOT00000001971 2 1 1 80 12 24367552 24367573 GGTGTGCTGAAAGATATCATCC 59 24367613 24369211 TCCAGAGTATTTCACCAGCA 59 NA Rattus norvegicus 81 Abhd17a ENSRNOG00000018212 ENSRNOT00000024576 1 1 1 80 7 11998469 11998571 CGATGCTTTCCCTAACATCG 59 11998614 11998632 ATCACCTCGTCTTCTGTGC 60 NA Rattus norvegicus 81 Gpr183 ENSRNOG00000025094 ENSRNOT00000034560 1 1 1 80 15 108366168 108376175 TCTGATACTAACTCTGACCACTG 59 108366110 108366128 TTATTGCCGTGAGAAGCTG 58 NA InUTR Rattus norvegicus 81 Sox12 ENSRNOG00000007514 ENSRNOT00000009852 3 1 1 67 3 147865180 147865198 CACAACGCTGAGATCTCCA 60 147865131 147865150 GGAATCTTCTCCGAGTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 3 2 2 81 6 135282102 135283469 CCTTCTGGTGAAGGTTGAG 58 135283512 135283532 GTCATACAGCTGTTCAAACTC 57 NA Rattus norvegicus 81 Hs3st5 ENSRNOG00000000605 ENSRNOT00000000743 2 1 1 119 20 40539599 40543724 GAGCTTGGATAGGCTCCAG 60 40543807 40543825 CGGAACTCATGCAGTAAGC 59 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000048328 ENSRNOT00000060380 3 1 1 92 15 31852451 31852564 CTTTCTCATGAGAGTTGCCC 59 31852619 31852637 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Fsip1 ENSRNOG00000005888 ENSRNOT00000007808 1 1 1 80 3 109999413 110001850 AAACATTGAGTTGGCCAAGAG 60 109999353 109999371 TTCAGGAGCTCATCCAGAC 59 NA Rattus norvegicus 81 Otub2 ENSRNOG00000009117 ENSRNOT00000012124 3 1 1 84 6 127298140 127298158 TTCATCAGGAACCGAGCTG 60 127298206 127299003 GCTCTACTTCGTGAGTGCA 60 NA Rattus norvegicus 81 Sppl2b ENSRNOG00000057881 ENSRNOT00000084144 3 1 1 80 7 11717792 11717810 GATCTGCGTGTTTGTTGTC 58 11717584 11717748 ATGATCACGTAGACCAAGC 57 NA Rattus norvegicus 81 Hrasls5 ENSRNOG00000023528 ENSRNOT00000032123 1 1 1 91 1 222907822 222908315 ACCTACAAATGACTCAGCGA 59 222908369 222908387 TTCGGGCCTGTTCTAATCC 60 NA Rattus norvegicus 81 Dnajc16 ENSRNOG00000012503 ENSRNOT00000017247 2 1 1 80 5 160337712 160337731 ACAATGCGGTAGTTCATGAG 58 160335875 160337671 TATTTGTGACCTTCTCCACCA 59 NA Rattus norvegicus 81 Rprd1b ENSRNOG00000012923 ENSRNOT00000017265 2 1 1 81 3 154526184 154526205 GAGGAAGATGATGACTACCCTG 60 154526241 154527848 CTTTGATTAACTCCTCAGTCAAGAG 60 NA Rattus norvegicus 81 Tab1 ENSRNOG00000017285 ENSRNOT00000067904 3 1 1 85 7 121370358 121370376 AGAAGGAGATCTCGGGAGG 60 121370424 121372677 CCTGTTCGTACCAACATTGG 59 NA Rattus norvegicus 81 Clmn ENSRNOG00000011044 ENSRNOT00000065529 1 1 1 80 6 128489133 128489153 AAATCTAGAGAAGGCATTCCG 58 128487382 128489091 TCAACCATGATGTCTTCCG 58 NA Rattus norvegicus 81 Fam71e1 ENSRNOG00000031739 ENSRNOT00000043724 2 1 1 60 1 100505380 100505398 TGAGGATGAGGATGAGGTC 58 100505422 100505980 CTCTGTGGCATGAAACTCC 59 NA DesignRelaxed Rattus norvegicus 81 Sgk494 ENSRNOG00000037214 ENSRNOT00000056217 2 1 1 80 10 65553841 65553861 AAAGGTTCGTTTGGAACTGTC 59 65553901 65554043 TACTTTGGGTACCACCTTCAC 60 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 2 3 3 80 18 70713729 70713749 GTCATTCTGGTTATCCAACAC 57 70713790 70716118 TTCTGTGTCATGAAACCCTC 58 NA Rattus norvegicus 81 LOC100911035 ENSRNOG00000045648 ENSRNOT00000042245 3 1 1 60 1 149964271 149964290 ACATTGTTGTGGTGTCTGTC 59 149964307 149964331 ACTGGAGGTCTTAGATACATATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr281 ENSRNOG00000049832 ENSRNOT00000040345 2 1 1 60 1 173468789 173468809 GAATCCACTAATCTACAGCCT 57 173468749 173468769 CCATAATTTCAACACAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055,ENSRNOT00000080035 1 2 2 80 13 47962051 47962070 ACCATACAGGAGATCAAGCA 59 47961173 47962010 ATCTTCACTCAACTTCATGCC 59 NA Rattus norvegicus 81 Olr60 ENSRNOG00000050496 ENSRNOT00000049401 3 1 1 60 1 167892538 167892558 GCTGAAACGACTGAACTACTG 59 167892498 167892519 ATGGAAACAGAATGAGTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 1 2 2 80 12 25208984 25209004 CAAGGCTACCAGTCATATCTG 58 25209046 25210544 GCTTCTGCAACATACTGCT 59 NA Rattus norvegicus 81 Scg5 ENSRNOG00000007542 ENSRNOT00000010679 1 1 1 80 3 105250428 105250446 AAGGACTTCAGTGAGGACC 59 105247246 105250385 TAGACATCCGTCATCTGCAG 59 NA Rattus norvegicus 81 AABR07027451.1 ENSRNOG00000046284 ENSRNOT00000074147 3 1 1 60 17 31813694 31813713 GTTGTGATGACACAAACTCC 57 31813653 31813671 AGATAGAGGCTTGACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 1 2 2 80 7 2781928 2781951 CTTAGAGACTATTTGGCGATTCAG 60 2781642 2781892 TCAAAGGAAATCGAGAAGTCCA 60 NA Rattus norvegicus 81 LOC100912543 ENSRNOG00000050632 ENSRNOT00000073807 3 1 1 60 3 158931739 158931760 CTCACACCATTTGCATAATGAG 58 158931700 158931721 AAGTAGTGGTTGATTGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc22 ENSRNOG00000007189 ENSRNOT00000009582 1 1 1 80 5 126241532 126241550 AGCTGACCTTGAGGAAGTG 59 126241589 126241920 CCCATGTAATAGTAAACCTGACTG 59 NA Rattus norvegicus 81 Olr841 ENSRNOG00000049788 ENSRNOT00000073545 3 1 1 60 5 64622202 64622223 CACTATCCTTGATTCTCACCTG 58 64622163 64622182 AAAGGAGAGGTTGCTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St3gal2 ENSRNOG00000017932 ENSRNOT00000024248 2 1 1 80 19 43277989 43280083 CAGATCCGATTCACCTATGCT 60 43277524 43277544 GAAGGCTGGGTTGTAAATCTG 59 NA Rattus norvegicus 81 Olr844 ENSRNOG00000049850 ENSRNOT00000074390 1 1 1 60 5 69305598 69305619 AGCAAAGAGGTGTATGTATCCA 59 69305639 69305658 CTGAGTTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1261 ENSRNOG00000049172 ENSRNOT00000075772 3 1 1 60 3 158888022 158888041 GGAAAGACATCATTCTGCCC 59 158888059 158888082 TTGGAGAGGATATAGCCATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr725 ENSRNOG00000006716 ENSRNOT00000008762 3 1 1 60 3 78836691 78836709 GTTTACCTTAGGCCCACAG 58 78836731 78836751 CAGTATAGAACACAGCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps15-ps2 ENSRNOG00000043026 ENSRNOT00000067441 1 1 1 64 7 2961561 2961579 AAGACCTTCAACCAGGTGG 60 2961452 2961470 ATAAATCGGGAGGAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mtmr14 ENSRNOG00000007881 ENSRNOT00000010723 1 1 1 80 4 145212037 145213276 TGGCATGAATGTAACCTCC 58 145213315 145213338 GGATATGGAATAGAAAGGAGAGTG 58 NA Rattus norvegicus 81 Acot11 ENSRNOG00000007837 ENSRNOT00000010396 1 1 1 80 5 126351395 126352122 TGGAGATCAGTGAGGTTCG 59 126351333 126351354 CATCCACATTTACCACCATCTC 59 NA Rattus norvegicus 81 Ndc1 ENSRNOG00000010620 ENSRNOT00000014275 3 1 1 80 5 127003815 127003837 GATAGATTTGGAGTTGTCCAGAC 59 127003875 127017694 GTATTTGTCAACAGCCTCCTG 59 NA Rattus norvegicus 81 Havcr2 ENSRNOG00000031443 ENSRNOT00000048485 3 1 1 80 10 31563720 31563739 TGCAGGATACAATTCCCTGG 60 31563781 31566272 GATGACTTTGGCTGGTTCAG 59 NA Rattus norvegicus 81 RGD1305184 ENSRNOG00000038957 ENSRNOT00000045950 2 1 1 60 18 55667026 55667046 ATTACAGAAGCAGCCATTGAC 59 55667067 55667086 CTTCTAGCCAGACAAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Copb1 ENSRNOG00000057623 ENSRNOT00000083293 1 1 1 80 1 183711123 183711142 TTTGACAACCTGAGAATGCT 58 183709384 183711083 TCCTCGATAAATCTTGACAGAC 58 NA Rattus norvegicus 81 Copb1 ENSRNOG00000057623 ENSRNOT00000083293 2 1 1 80 1 183711122 183711141 TTGACAACCTGAGAATGCTG 59 183709383 183711083 CTCCTCGATAAATCTTGACAGAC 59 NA Rattus norvegicus 81 Dio1 ENSRNOG00000061237 ENSRNOT00000091521 3 1 1 89 5 126902194 126911187 TTTCATTCAAGGCAGCAGAC 59 126902121 126902140 ACGAGTCTCTTGAACTGGTC 60 NA Rattus norvegicus 81 Panx2 ENSRNOG00000055530 ENSRNOT00000089707 3 1 1 153 7 130043041 130049716 AGAACTTCGCAGAGGAACC 60 130049833 130049851 AACTTGTGCTCAAACAGCG 60 NA DesignRelaxed Rattus norvegicus 81 Ptprv ENSRNOG00000005277 ENSRNOT00000007597 2 1 1 80 13 51945164 51945182 GTGGGTACTGAGGACTGTG 59 51944635 51945121 AACGCTGAACCTATACTGGA 59 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937,ENSRNOT00000077245 3 2 2 81 4 155535085 155537201 ATAAGCAGGTGAAGACCTGG 60 155537243 155537263 TTGCTAGTCTTCAACCATTGG 59 NA Rattus norvegicus 81 Nup214 ENSRNOG00000023393 ENSRNOT00000037164 2 1 1 80 3 11012307 11012327 TCCTGTTACAGAGAAGCAGAG 59 11012368 11012791 AAGTGTGCAATCTCCTCTCC 60 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000002542,ENSRNOT00000078394 3 2 2 69 11 88092356 88092374 GATTTCGAGAGGCCTTAGC 58 88092100 88092118 AGTTGAGCTTCTAGCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Podxl2 ENSRNOG00000016255 ENSRNOT00000021826 3 1 1 80 4 120792503 120792920 ACTCTACTCAGGTGATCTGC 59 120792442 120792464 CTATGTTCTCTGTCATGTTCAGG 59 NA Rattus norvegicus 81 Krtap7-1 ENSRNOG00000043017 ENSRNOT00000064103 2 1 1 60 11 29641362 29641380 GTGGAACCATCTACAGCTC 58 29641320 29641341 GGATTCTGGAAGTTACTAACGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd3 ENSRNOG00000028103 ENSRNOT00000039836 1 1 1 80 10 86608418 86608439 GAGAAGTTTCAAACAGATGGGA 59 86608480 86608616 GATCATACGCACACCTGTC 58 NA Rattus norvegicus 81 Olr400 ENSRNOG00000046801 ENSRNOT00000047879 1 1 1 60 3 15896030 15896051 GGTCACACCTATGTTTAATCCA 58 15896072 15896090 CGCTCCTTTCATATCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc8 ENSRNOG00000008264 ENSRNOT00000010924 3 1 1 80 10 70248886 70248906 ACACGAGTTACTGTCTCACTG 60 70248947 70249478 CGGTTGCAAACTTATAGGGC 60 NA Rattus norvegicus 81 Gbas ENSRNOG00000023919 ENSRNOT00000035621 1 1 1 81 12 30546862 30546880 TCTGGAGGTATGAGGGAGG 60 30545531 30546820 CGGAAACTTACAAATTCCTGGT 59 NA Rattus norvegicus 81 Slc7a7 ENSRNOG00000010296 ENSRNOT00000014391 2 1 1 80 15 33015758 33016710 TCTCTACTCTTCAATGGTATCTTGG 60 33015702 33015725 GAAGCTGTAGTAGTTAATGAGCTG 59 NA Rattus norvegicus 81 Csf3 ENSRNOG00000008525 ENSRNOT00000011509 3 1 1 81 10 86618430 86618448 ATACCTGCAGAGCTTCCTG 59 86618492 86618513 ACTTTCTGGAAAGTGCTTCTG 59 NA Rattus norvegicus 81 LOC102553012 ENSRNOG00000042322 ENSRNOT00000067185 3 1 1 60 18 30832069 30832089 TGACAATGCTCCTGTATTCAC 59 30832110 30832129 AGGCAAATTCTCCTTCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910152 ENSRNOG00000033045 ENSRNOT00000044446 1 1 1 74 4 170767146 170767164 GAGGGACAACAAGAAGACG 58 170767202 170767220 TTGTTGAGCTCTTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053707.1 ENSRNOG00000017740 ENSRNOT00000023913 1 1 1 80 3 121492832 121492850 GAGCGGACATAGGAATGGA 59 121492894 121493035 CAACAAGAACCACCAGGTG 59 NA Rattus norvegicus 81 Gng4 ENSRNOG00000047080 ENSRNOT00000070807 2 1 1 75 17 90290084 90290102 CAGCTGAAGATGGAAGCCT 60 90269524 90269542 CTTCACAGTAGGCCAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC680384 ENSRNOG00000029278 ENSRNOT00000047850 3 1 1 60 4 31705061 31705079 AACTTACGTGCCTGTTACC 58 31705100 31705121 TTAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gje1 ENSRNOG00000012092 ENSRNOT00000016102 1 1 1 80 1 8885229 8885936 AAGGATGTGTTAAACCTCCC 58 8885168 8885186 CTCCAAGGAAGAACATCCG 58 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 3 1 1 105 4 98728719 98731713 AGAGTCACACCACAAGAGC 60 98728632 98728650 CAGGATACCCATCCTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000039151 1 1 2 102 3 11812928 11812946 CAAACCCTTGGGAAAGCTG 59 11813179 11813295 CCTTGGCATTGCATTGGAG 60 NA Rattus norvegicus 81 LOC100912380 ENSRNOG00000048194 ENSRNOT00000074211 3 1 1 80 1 88652726 88652745 TTTGATACTGACCGATCAGG 57 88652548 88652684 CTGATTCAGGTGGAATCCTG 58 NA Rattus norvegicus 81 Morf4l1 ENSRNOG00000058412 ENSRNOT00000080421 2 1 1 80 8 97482999 97483019 AAAGCAGAGTGCTCAAATACG 59 97481395 97482959 CTGCATATTGTTCCTGGTTGG 60 NA Rattus norvegicus 81 Spata2L ENSRNOG00000016167 ENSRNOT00000021968 2 1 1 80 19 56034918 56036376 CCATCAAGACCTTCTCAGGG 60 56034857 56034875 TCTGGAAGCTTCGAGTCAG 59 NA Rattus norvegicus 81 Sema4f ENSRNOG00000006784 ENSRNOT00000009269 1 1 1 80 4 113745776 113745888 CATCCTGGCTTAATGCTCC 58 113745714 113745733 CATCGTCTCCATCTTCATCC 58 NA Rattus norvegicus 81 Serinc3 ENSRNOG00000009552 ENSRNOT00000013445 1 1 1 80 3 160020290 160023805 TATTCTAGCATCCGTACTTCGAG 60 160020232 160020252 GTCACCAAGGATAACACTGTC 59 NA Rattus norvegicus 81 Ppm1f ENSRNOG00000037909 ENSRNOT00000002530 2 1 1 80 11 88328822 88328843 TCTCTGAATTTAAGAGGTTGCC 59 88325880 88328781 CATCCAGTAGGGTCGTGAG 59 NA Rattus norvegicus 81 LOC502618 ENSRNOG00000039210 ENSRNOT00000060011 2 1 1 80 3 14595095 14598798 AGTGGGAAGCTACATTTGGT 59 14595034 14595052 ATGACCTTCTGGTTGACCA 59 NA Rattus norvegicus 81 Atp8a1 ENSRNOG00000034200 ENSRNOT00000044017 2 1 1 80 14 42161393 42161415 CAATAGAGTCTCCAAGTGTATCC 58 42161454 42168551 ACAAAGGCAAACCAGATCTC 59 NA Rattus norvegicus 81 Gatad1 ENSRNOG00000008613 ENSRNOT00000067376 1 1 1 84 4 27654891 27656990 TATAATAGGGCCAGAGGAAGAC 59 27657032 27657053 TGACTTGAAATACTCAGAAGGG 58 NA Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000056434 3 1 2 99 9 105545603 105545847 CGATAGAGATCCTTGCGCT 60 105545522 105545541 CATTCAGGGTGCTTGATAGC 59 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 2 2 2 80 8 119085453 119085472 GTCTTTCTTGGTACAACCGG 59 119085514 119086673 ACCCTTGATGATCTACCTCG 59 NA Rattus norvegicus 81 AC115145.1 ENSRNOG00000058087 ENSRNOT00000085651 3 1 1 80 1 63683297 63683440 AGTGACAGGATTCTACAGCA 59 63683236 63683256 TTGAGAGTCACATTTCCTCCT 59 NA Rattus norvegicus 81 Herc6 ENSRNOG00000023969 ENSRNOT00000058626 3 1 1 80 4 88627375 88628131 CCTCCTTGATAACCACTTGTC 59 88627315 88627338 CTAATAGAGCTTCTTGATGTGGAG 59 NA Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 1 2 2 80 14 38230953 38230972 GGGAATCAGGTTTCAGTGGA 60 38231013 38231817 GGCTTCCGCTTCTTTAATCTC 60 NA Rattus norvegicus 81 Vpreb1 ENSRNOG00000052348 ENSRNOT00000081776 1 1 1 170 11 88376312 88376330 CTGCTTCCTAGCTGGTCAG 60 88376551 88376569 TTCCAAGGAAGGAAGAGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984,ENSRNOT00000043079,ENSRNOT00000006393 2 4 4 80 7 78589130 78589149 CAGCGATTTCCTTGATGGTC 59 78589192 78589522 TGAATGTCACCCATTGCAG 59 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000018828 3 1 2 131 7 143960114 143966753 CTGCTTGAGGAAGAAGCTC 58 143960001 143960019 GTATGGCTTCTTTGTGCCT 58 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 3 5 5 80 6 80226651 80228034 GAGGCTTCCGATCAATTCG 59 80228170 80228191 CTTCAATTAGTGCAGAAAGCTC 58 NA Rattus norvegicus 81 LOC498826 ENSRNOG00000031060 ENSRNOT00000046326 2 1 1 80 18 15276734 15283746 TACAAGAGATGGACTGGAGC 59 15276673 15276691 CCATGACCATTGCAACTCC 59 NA Rattus norvegicus 81 RGD1562063 ENSRNOG00000033520 ENSRNOT00000049198 2 1 1 80 7 117426719 117426737 CAAATGTGGTTGCAAGCAG 59 117426780 117426881 TCCAGAGGACTTGAATTTGC 58 NA Rattus norvegicus 81 Mcmbp ENSRNOG00000020394 ENSRNOT00000027644 3 1 1 80 1 200129366 200129384 ATGCACTCTTGGGAGACAG 59 200127401 200129327 GTACATCTCTTCTTGTATACACGG 59 NA Rattus norvegicus 81 Rgmb ENSRNOG00000048190 ENSRNOT00000075401 3 1 1 81 1 57797361 57809588 CTGCCACGAACAAGATCAC 59 57797298 57797316 TCATCTGTCACAGCTTGGT 59 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 1 2 2 80 15 34496980 34497000 AGCTCATTATGAGACTGAGGG 59 34497042 34497656 TAGCCTAGGAGCTTGACCA 60 NA Rattus norvegicus 81 Mob3b ENSRNOG00000009453 ENSRNOT00000012519 1 1 1 84 5 50472702 50472720 CAACACCTGCTACAAACAC 57 50439966 50472654 CATCTCTTTCAAGGGCTCC 58 NA Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 2 2 2 80 17 4338155 4339220 TGGATGTTAAAGACAAGTCTGG 58 4338096 4338116 ACAAGAGTTGAACCACATCTG 59 NA Rattus norvegicus 81 RGD1308112 ENSRNOG00000039568 ENSRNOT00000060656 3 1 1 80 13 51370704 51370725 ACTCCAAATCACTAAACAGCTG 59 51365974 51370666 TCAACCATGTCTTTCTTCTCTG 58 NA Rattus norvegicus 81 Ifi27l2b ENSRNOG00000026605 ENSRNOT00000032015 1 1 1 88 6 127336999 127337017 CAAGATGATGTCTGCTGCA 58 127336505 127336952 CAAGTACACCTATTGACTGTAGTG 59 NA Rattus norvegicus 81 Olr1400 ENSRNOG00000045932 ENSRNOT00000046027 3 1 1 60 10 34631614 34631633 TATACCACAAGCACCGTACC 60 34631654 34631674 TGATGGTCCTATCAAACCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm31y ENSRNOG00000003377 ENSRNOT00000004491 2 1 1 60 X 98095031 98095052 AATATCCTGCAAGACAACTGAG 59 98094992 98095010 GCTGTTCTTGCCCTATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360891 ENSRNOG00000048413 ENSRNOT00000042721 2 1 1 93 15 31243131 31243245 ACTTTCTCCTGAGAGTTGCC 60 31243301 31243319 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Olr717 ENSRNOG00000046433 ENSRNOT00000048787 1 1 1 60 3 78639678 78639697 GACACTTACTTCCTTGGGCT 60 78639637 78639658 AGACCACTACAGATATTGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 2 2 2 80 10 110533802 110535464 CCCTAAAGGCCTCTGTGTC 60 110533740 110533758 TGTACATGGCCAGTGTGAG 60 NA Rattus norvegicus 81 Hist1h1d ENSRNOG00000047459 ENSRNOT00000072564 3 1 1 61 17 43734770 43734791 TCCTTCAAACTCAACAAGAAGG 59 43734813 43734831 CCTGCCTTCTTTGCTTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 3 2 2 80 5 126671247 126671266 TGTCCGGTTTACACTACCTG 60 126671306 126674104 TCATCTACTACACCTCGTAGGA 59 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 3 2 2 82 1 198458188 198458208 TCAGCTTATATTTCGGACCAC 58 198456844 198458144 TCACCAGTACCTTTGTTGC 58 NA Rattus norvegicus 81 Abcg4 ENSRNOG00000008862 ENSRNOT00000012534 1 1 1 80 8 48612173 48612306 TGTTTGACAAGCTCTACATCC 58 48612113 48612133 CCTTCAAATAGGGAATCAGGT 58 NA Rattus norvegicus 81 Gif ENSRNOG00000021001 ENSRNOT00000028507 2 1 1 81 1 228127113 228127131 CATTGCCCAGATTCTCCCT 60 228127176 228128417 CACTTCATGATCAGGGCCA 60 NA Rattus norvegicus 81 Olr472 ENSRNOG00000009670 ENSRNOT00000012814 3 1 1 60 3 73352960 73352979 ATTTAACCTCTCCCTCTCCC 58 73352998 73353020 AGCAGGAAAGATATACAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909538 ENSRNOG00000048428 ENSRNOT00000074545 3 1 1 64 15 2733221 2733239 CAGGGTGGATGAAGTCTGG 60 2734069 2734088 CAAATCGGTTATTTGCCGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC690384 ENSRNOG00000039487 ENSRNOT00000060519 2 1 1 60 15 28439376 28439395 GATGACCCGAGAATACACCA 59 28439418 28439436 CTTCTTGAAGCCCACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0719.3 ENSRNOG00000051165 ENSRNOT00000075990 1 1 1 60 X 70946129 70946147 AAATACCACCAGGACTGGG 59 70946171 70946189 CCATGTCTGAATCGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 3 2 2 120 1 197999414 197999730 GAGCACTGGATTCCTTCAG 58 197999814 197999832 CCTACAACCTTCCCTTCAG 57 NA Rattus norvegicus 81 Cct8l1 ENSRNOG00000050369 ENSRNOT00000073925 3 1 1 60 4 6045400 6045418 TGCCACAAGGTTTACAGGA 59 6045358 6045380 GTTCCCACTCAAACATTATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000077226 2 1 2 82 1 198112415 198116485 TTAGAGGAGGCATTGCTGG 60 198112351 198112369 ATCGGCTCAATGTAGTGGG 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 3 1 3 165 2 261399453 261400612 GGAAATGGAGGATCGACAC 58 261383367 261384663 AGTTTCCAGCTCCAAAGAG 57 NA Rattus norvegicus 81 Ddx58 ENSRNOG00000006384 ENSRNOT00000060765 3 1 1 80 5 56523725 56524678 AATCAGACAGATCTGCTTCAC 58 56523665 56523686 TCCTTATCGGATCTGAGAAGAC 59 NA Rattus norvegicus 81 Lig1 ENSRNOG00000014193 ENSRNOT00000019799 3 1 1 80 1 75383953 75383971 TCCTGAAACGCTTTGAGGA 59 75384012 75384399 CTTCCAGAACATGTATCTGTGC 60 NA Rattus norvegicus 81 Mir17 ENSRNOG00000035657 ENSRNOT00000053780 1 1 1 60 15 100179879 100179900 GTCAGGATAATGTCAAAGTGCT 59 100179921 100179939 TTCACTGCAGTAGATGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553866 ENSRNOG00000031003 ENSRNOT00000052100 1 1 1 83 1 198838537 198838555 AGGAAGAGACCGAACTGTG 59 198837968 198838490 GTCTGCAATCTGAGTGGAC 58 NA Rattus norvegicus 81 AABR07060118.1 ENSRNOG00000054042 ENSRNOT00000088439 3 1 1 80 4 57589608 57589629 GTGTCTGCAGTTCAGTTGG 59 57589545 57589564 ATTAACGACTGCTAAACGCA 58 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 2 2 2 80 1 112890219 112890237 GTGTCCAATGCAGCTTGAG 60 112863386 112890179 GAATTAGGGTAAGCATAACTGCC 60 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000048191 ENSRNOT00000057271 3 1 1 86 6 127932213 127932233 CATTAGGGAAGTCTTCTCCCA 59 127932281 127933201 GCCTTGTGGACTACCTGAG 60 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 1 3 3 82 5 59497115 59498121 ACTACCAGGAGAGCAATGG 59 59498165 59498185 GATACTTTCAGGCTCTGACTG 58 NA Rattus norvegicus 81 Cycs ENSRNOG00000032885 ENSRNOT00000048429 1 1 1 60 18 62476531 62476551 AGATGCCAACAAGAACAAAGG 60 62476491 62476511 TTCCAAATACTCCATCAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1214 ENSRNOG00000051115 ENSRNOT00000071422 2 1 1 60 8 40384387 40384405 TACACCGTGACCATGTCTC 59 40384427 40384447 CCATCACATAAACACCTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hal ENSRNOG00000004502 ENSRNOT00000006971 1 1 1 80 7 34337881 34337900 GGTGAACGATACAATTGCCT 59 34337940 34340570 GCAAAGACCATAGGATTGTCTG 60 NA Rattus norvegicus 81 Baiap2l2 ENSRNOG00000012215 ENSRNOT00000016362 3 1 1 80 7 120517834 120517852 ATGGAGCAGTTTAATCCCG 58 120517354 120517791 CTCAGACAGAGCATGAAAGG 58 NA Rattus norvegicus 81 Fgf14 ENSRNOG00000009288 ENSRNOT00000041551 1 1 1 80 15 110546694 110550255 CAGCACCAATTCCACTCTG 59 110546632 110546651 TACAACCCTGTCTTCACTCC 59 NA Rattus norvegicus 81 Nap1l2 ENSRNOG00000003025 ENSRNOT00000004038 2 1 1 60 X 73998403 73998423 CACATAGAATGGAACGAAGGG 59 73998363 73998384 GTCTCTGTTTCTTCTTGATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xrcc3 ENSRNOG00000012141 ENSRNOT00000016208 1 1 1 89 6 136371786 136371874 GTCTGCAGGTTTGTGTCTC 59 136371715 136371733 ATCAGTTGCATCAGGAGCT 59 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 2 2 2 80 4 57760338 57762692 GATATACGGACAGGCAATGG 58 57762732 57762753 TCTGTGCTATAGATGTAGCCAG 59 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 3 1 1 64 10 74384410 74386493 CACTCCTTACCTAAATCAGGAG 58 74384367 74384385 TTGTGGTAGAGCACAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Nme7 ENSRNOG00000002898 ENSRNOT00000058897 1 1 1 80 13 82676067 82681011 TGTCCGAGTATAATGACATGGT 59 82681052 82681070 TCGTAGGATTGCTCTGCTG 60 NA Rattus norvegicus 81 Igfn1 ENSRNOG00000026087 ENSRNOT00000038874 1 1 1 80 13 52810924 52810944 CTCAGATATGGGCCTCTACTC 59 52810003 52810883 TTATCCTTCCCACCTTCGAC 59 NA Rattus norvegicus 81 Igfn1 ENSRNOG00000026087 ENSRNOT00000038874 3 1 1 80 13 52810924 52810943 TCAGATATGGGCCTCTACTC 58 52810002 52810882 TTTATCCTTCCCACCTTCGA 59 NA Rattus norvegicus 81 Mocos ENSRNOG00000015113 ENSRNOT00000066583 3 1 1 80 18 16619550 16619568 GATACAGGTGCCTCTTGAG 57 16619609 16623582 TAAGTATTTACCCTGTCTGCAC 58 NA Rattus norvegicus 81 Tspo ENSRNOG00000010549 ENSRNOT00000014089 1 1 1 111 7 124460411 124468360 AGGCTGTGGATCTTTCCAG 59 124468435 124468453 AAGTAGGCTCCCATGAAGC 60 NA InUTR Rattus norvegicus 81 Ell2 ENSRNOG00000027089 ENSRNOT00000032974 1 1 1 80 2 2514558 2516233 ATCTCCTCAGAAACGACCT 58 2516274 2516295 TTTGTCAGGTGAGATATTCGAG 58 NA Rattus norvegicus 81 LOC100359715 ENSRNOG00000030301 ENSRNOT00000042653 1 1 1 60 18 39957097 39957116 TGAGGCTTGGAGATACATGG 59 39957056 39957077 TACTATTACGCTCATGGAAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063,ENSRNOT00000073255 3 3 3 80 1 190004655 190004676 GCAGATAACTGTTCTTCTTGGA 59 190004713 190010622 GTAGGAAGATACAAACCTGTGAG 59 NA Rattus norvegicus 81 Rtkn ENSRNOG00000009022 ENSRNOT00000031964 1 1 1 80 4 114848466 114849106 CTCATCAACAAGGAGACTAGG 58 114849148 114849166 GTTGCTGATACTGAGGGTG 58 NA Rattus norvegicus 81 RGD1559786 ENSRNOG00000012724 ENSRNOT00000065275 3 1 1 82 5 127491631 127491838 GGGAGAACTCTATTGAAATTCTGAG 59 127492939 127492963 CTCTACTATTGTCTTGAACTTCTCG 59 NA Rattus norvegicus 81 Nrl ENSRNOG00000018528 ENSRNOT00000024991 1 1 1 60 15 34198617 34198635 CTGTGGAACTACTGCAGAG 58 34198575 34198593 GAATAGTAGCCATGAGGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 1 1 1 60 4 163089799 163089818 AAGAGACCTGCAAATTCCAC 59 163088811 163089776 TCCAATTCAGTCTGGTCGT 59 NA DesignNoJunction Rattus norvegicus 81 MGC95208 ENSRNOG00000000720 ENSRNOT00000000911 2 1 1 81 11 1818798 1818817 GACAATGACGAGATCATGGC 59 1817432 1818754 CACGAATAGCATCTTGGCG 60 NA Rattus norvegicus 81 Samd11 ENSRNOG00000020342 ENSRNOT00000027564 3 1 1 80 5 173673479 173673499 TGGACTGTAGATGATGTCTGC 60 173673262 173673440 TCCTTGTTCTCTGAATACCCTG 60 NA Rattus norvegicus 81 Gbp3 ENSRNOG00000036885 ENSRNOT00000040856 2 1 1 80 2 248479335 248479354 AGATGTGTCAGAAAGTGCAG 58 248457915 248479292 CTTCCTTCTCACAGGAGGT 58 NA Rattus norvegicus 81 Rnps1 ENSRNOG00000008703 ENSRNOT00000010915 2 1 1 80 10 13793436 13793454 TATGCGTACGTGGAATTCG 58 13793497 13795225 TTGGCCATCTATTTGTCCTC 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 1 2 2 60 7 144267238 144269423 CTGATCAGGAGCACCTCTC 59 144267196 144267214 GTCGCTTTAACTCCACTGC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1565655 ENSRNOG00000047176 ENSRNOT00000075546 2 1 1 90 1 82952112 82952130 CTCAGAGAAGCCATGGGAG 60 82950753 82952059 TACAGGTCAGCGTATCTGAG 59 NA InUTR Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603,ENSRNOT00000078987 1 2 2 80 9 92625379 92626629 GAGCAGAAGTATCAGGAATGTC 59 92626668 92626688 GTCACTGAGGATGTCATACAC 58 NA Rattus norvegicus 81 RGD1561636 ENSRNOG00000032847 ENSRNOT00000049811 2 1 1 60 4 59014304 59014322 TAAAGTTCAAGGTCCGCTG 58 59014262 59014283 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhot2 ENSRNOG00000019930 ENSRNOT00000027083 2 1 1 80 10 15207652 15207751 CAGGCTATCACAGTTACCC 57 15207590 15207608 CACCTTACACATGAGGACG 58 NA Rattus norvegicus 81 Ccdc8 ENSRNOG00000027936 ENSRNOT00000029810 1 1 1 80 1 78935070 78935091 TGCAGTTAATCCAAGAACAGAG 59 78935132 78935180 TTTGGACTAGCCTCTGCTC 59 NA Rattus norvegicus 81 Cpt2 ENSRNOG00000012443 ENSRNOT00000016954 2 1 1 81 5 127514754 127514774 TCCCTAAACTTGAAGACACCA 59 127513156 127514711 TCTGTTCTCCTGAACTGGC 59 NA Rattus norvegicus 81 Muc13 ENSRNOG00000001794 ENSRNOT00000002444 1 1 1 80 11 70195818 70198893 CTATTCCCAACAAGATCGGTG 59 70195758 70195777 GTGCATTGTAAACCATTCCG 58 NA Rattus norvegicus 81 Mal ENSRNOG00000015445 ENSRNOT00000020870 1 1 1 90 3 120217104 120233493 TTGAGTTTATCTTTGGAGGCCT 60 120217035 120217053 GACACAAACATCACCCAGC 60 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 3 2 3 85 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717829 164717849 CTCAGGGTGTAGATGATAGGG 59 NA Rattus norvegicus 81 Kcnv2 ENSRNOG00000012566 ENSRNOT00000016757 1 1 1 125 1 245398391 245398409 GCTCTTCATCACTATGGGC 58 245398498 245412858 GTAGAGATGCTTACCGCAG 58 NA Rattus norvegicus 81 Bri3bp ENSRNOG00000000979 ENSRNOT00000001295 1 1 1 80 12 36579818 36579840 AGGGAGTGGATATGTTCTTAGAG 59 36576783 36579778 GGTTAGATACGTCGAGCCC 60 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 1 2 2 80 2 238164883 238164901 GTGGATTTCTGCAGTGGTG 59 238163058 238164689 CTCTATTAATGTGACCTGGCAC 59 NA Rattus norvegicus 81 Tsen2 ENSRNOG00000060175 ENSRNOT00000081957 3 1 1 80 4 147471746 147478952 CTAGAAGAGGCTTTCTTCCTG 58 147481742 147481762 CTTCACTATGGTCAAAGGCTC 59 NA Rattus norvegicus 81 Osr1 ENSRNOG00000004210 ENSRNOT00000005666 2 1 1 80 6 35314667 35314685 CTCTGGTCACTCAAGTCCA 59 35314726 35319112 TCAATAATCGATCTTGTTCCGC 59 NA InUTR Rattus norvegicus 81 Vom2r6 ENSRNOG00000050370 ENSRNOT00000073546 1 1 1 80 1 747315 750261 AAACAGTGGTTCCCTCCTC 59 747253 747271 AGTCGGCTGTTTGTTTCTG 59 NA Rattus norvegicus 81 Bsdc1 ENSRNOG00000008338 ENSRNOT00000011054 2 1 1 82 5 147661944 147664791 GCAGTCAAAGAGAAGTCCAC 59 147664836 147664854 GTGTCATGCTGTACCACCT 60 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 3 3 3 80 1 275853854 275853873 TTTACCAGGTTTGTCACGAG 58 275853244 275853811 CTTCCTGGTCATCTTGCTC 58 NA Rattus norvegicus 81 Foxr2 ENSRNOG00000030619 ENSRNOT00000043382 2 1 1 60 X 19145189 19145209 TGATAATGATGGTCCTCCCAC 59 19145149 19145169 CACAATGTTAGGATTCACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 1 1 1 60 X 124515486 124515504 GGTATTTGATGGAACGCGA 58 124513288 124515462 CCCTTGGACACATAGTAGC 57 NA DesignNoJunction Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221,ENSRNOT00000066037 2 2 2 81 7 11695530 11695548 CAGGCAAGGTTACAAGGAC 59 11693376 11695485 CTTCACACCTTCCTGTCAG 58 NA Rattus norvegicus 81 AC118496.1 ENSRNOG00000054817 ENSRNOT00000087847 2 1 1 80 6 103452393 103452414 GAAGAACTCTCACCTACTGCA 60 103452456 103452474 AGCCACTGAGGATTCTTCC 59 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828,ENSRNOT00000090912 2 2 2 80 2 104869955 104869976 TCTTACCAACTTTGATGATGGC 59 104870015 104872159 TCGTCCTTGTATTCCTTTCCT 59 NA Rattus norvegicus 81 LOC100361952 ENSRNOG00000038376 ENSRNOT00000058437 3 1 1 93 4 93959193 93959591 GATTCAGGGAACCAGTGGT 59 93959647 93959666 TGACTTGCAAGAGATGGAGG 60 NA Rattus norvegicus 81 Csrp1 ENSRNOG00000008937 ENSRNOT00000011991 2 1 1 80 13 52563743 52563762 ACAGTCTACTTTGCTGAGGA 58 52563805 52568525 CTTCTTGCAAACCATGCAC 58 NA Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000077026 3 1 2 82 X 140880705 140888259 CAAACACATGAAGTGTTGTCC 58 140888303 140888321 GCATACCAACGTCAGTAGC 59 NA Rattus norvegicus 81 Psmb1 ENSRNOG00000001488 ENSRNOT00000002037 2 1 1 81 1 57472361 57482660 GGACTTGATGAAGAAGGAAAGG 59 57472301 57472319 CTCCGGCTTTGAAAGAGTC 59 NA Rattus norvegicus 81 AABR07054897.1 ENSRNOG00000042226 ENSRNOT00000043955 3 1 1 81 3 173269735 173269754 CAATCCTTTGCCAAAGAGTC 57 173269797 173270021 TTCCCAAATGGAGCATACAG 58 NA Rattus norvegicus 81 Ly49s4 ENSRNOG00000051447 ENSRNOT00000090979 2 1 1 80 4 164486351 164486370 GCGTGAATGTAAACAGACCT 59 164476042 164486310 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Prss29 ENSRNOG00000039405 ENSRNOT00000060387 2 1 1 81 10 14681414 14681432 TCCAATCATGGCCAGAGAC 60 14681477 14681575 CTGAGTCACCATAGCAGGA 59 NA Rattus norvegicus 81 Zfp296 ENSRNOG00000049605 ENSRNOT00000074579 3 1 1 85 1 80488178 80488388 AGTTCTATGTCTTCCGACCG 59 80488436 80488454 AATGGGAAGATCTTCCCGC 60 NA Rattus norvegicus 81 Helz2 ENSRNOG00000013267 ENSRNOT00000017787 3 1 1 81 3 176733506 176733615 ATTCTTCCCGCAAGGTACC 60 176733443 176733463 TGGTTCAGCTTATGATGTCCA 60 NA Rattus norvegicus 81 Tcf7l1 ENSRNOG00000014753 ENSRNOT00000020005 3 1 1 81 4 100659444 100659462 GATGATTCCAGACCTGAGC 58 100514477 100659399 TTTCATCTGCAGGTAGGTG 57 NA Rattus norvegicus 81 Evi2a ENSRNOG00000022764 ENSRNOT00000039261 1 1 1 80 10 66871293 66873844 TCTGTAAGATACCAGTGTACCT 58 66871234 66871252 CACACTGTTGTCATCAGGA 57 NA InUTR Rattus norvegicus 81 LOC680656 ENSRNOG00000042062 ENSRNOT00000065877 2 1 1 60 5 173140123 173140141 AGCTATGCAGGAGATCGTG 59 173140165 173140183 CAGCATGACACAGATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tenm4 ENSRNOG00000011151 ENSRNOT00000015181 3 1 1 80 1 161858942 161861914 TGTTACAAGACCAAGTCCG 57 161861958 161861976 CTTCCATACCATTGGCCAG 58 NA Rattus norvegicus 81 Coq9 ENSRNOG00000016190 ENSRNOT00000021716 3 1 1 82 19 10585136 10585477 GCTAAGCAGGTGAAGTCCA 60 10584627 10584646 AGACCTGTCAGGTTCTTGAG 59 NA Rattus norvegicus 81 Aspm ENSRNOG00000012318 ENSRNOT00000016797 3 1 1 80 13 56590716 56591505 AGTTTCAAGACTTAAGCCACAG 59 56591545 56591564 AGTTGAATAGCTTGCAGGGA 60 NA Rattus norvegicus 81 Lzts3 ENSRNOG00000021231 ENSRNOT00000028835 3 1 1 83 3 123178162 123178504 CTAGACCAGTGCTCAGAGC 60 123178097 123178115 CAGGTTCTGCATGGAATGG 59 NA Rattus norvegicus 81 LOC100362687 ENSRNOG00000043109 ENSRNOT00000063929 3 1 1 101 6 142371791 142371811 GAGATGATTCACAAAGCATGG 58 142371689 142371731 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Nudt19 ENSRNOG00000059386 ENSRNOT00000079088 1 1 1 80 1 91827110 91827128 GAAGTACCCGAGAAATGGC 58 91820708 91827066 ATACAGCTCATCTCCTGGG 58 NA Rattus norvegicus 81 Clec1b ENSRNOG00000057335 ENSRNOT00000082537 1 1 1 80 4 163167141 163168785 AGCACGCTGAAATACATCAC 59 163168825 163168846 CCAGTCTTTCTTAGAGTTCTGG 58 NA Rattus norvegicus 81 AC094246.1 ENSRNOG00000022718 ENSRNOT00000031545 1 1 1 82 1 255710787 255710830 GACATTTACTACATCAGGCTGC 60 255710873 255710891 GTGAACTGGTTGATGGCAG 59 NA Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 1 2 2 80 10 55434298 55434319 GGCTGAACAAAGAAATAGAGAC 58 55431654 55434259 TCTAGTTTCTCCTTTAACGCC 58 NA Rattus norvegicus 81 Echdc2 ENSRNOG00000029333 ENSRNOT00000047653 2 1 1 80 5 127773871 127773967 CTTTGTCAGCGAGTTGCTG 60 127774011 127774029 ACTGCACTTCTGAAGAGCA 59 NA Rattus norvegicus 81 Fam102a ENSRNOG00000050834 ENSRNOT00000073087 1 1 1 80 3 11581968 11582065 GTCCAAGCTTTCTGGTCAC 59 11582109 11582127 GTGGATGTATTTCTGCGGT 58 NA Rattus norvegicus 81 Csnk2a2 ENSRNOG00000011933 ENSRNOT00000016386 1 1 1 80 19 9983242 9983262 AAGATTCTGGAGAACCTTCGT 59 9983304 9987078 TGGTGTCTTTGACACAGGG 60 NA Rattus norvegicus 81 Rn60_10_0698.7 ENSRNOG00000051109 ENSRNOT00000076821 3 1 1 60 10 70097818 70097836 GAAGGTTCTAAGGCATGGG 58 70097776 70097794 GTCAGTCAATGCGTTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000090303,ENSRNOT00000034642 1 2 2 88 14 38108161 38108179 CTGTGATGGTTATCCACGC 59 38107435 38108110 GGAAATGAACCCTGGATCTC 58 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 1 2 2 80 4 56722868 56722886 GCCCATTAAGCATACCGTC 59 56722929 56723180 CCTTCTCCTACATTCACCCT 59 NA Rattus norvegicus 81 Fam101a ENSRNOG00000001011 ENSRNOT00000001337 2 1 1 82 12 37047377 37047395 CTCCCTTCTATGCCCTGTC 59 37040781 37040800 ATTTGGGAAGAGGGAAGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Amotl1 ENSRNOG00000008990 ENSRNOT00000061616 3 1 1 80 8 13089939 13089958 AGTTTCCACCACTTTCACAC 59 13089560 13089620 ATGACAACTTAAGGCTTTACCC 59 NA Rattus norvegicus 81 Arrdc3 ENSRNOG00000045649 ENSRNOT00000072849 1 1 1 80 2 8736893 8736911 GTGAAGAAGGCTTCAGCAC 59 8736955 8738487 TAGCAAGTGGTGTCTGTGG 60 NA Rattus norvegicus 81 Olr1007 ENSRNOG00000050845 ENSRNOT00000044587 2 1 1 60 7 6068578 6068599 CTCGTGTCCTAGAAATGATGTC 59 6068618 6068638 ACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1174 ENSRNOG00000049712 ENSRNOT00000049066 1 1 1 60 8 20535974 20535992 TGAACTTCTCCAGAGGCAC 59 20536013 20536034 TTGAGAACTTGAGCCAATTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 1 2 2 80 10 15705209 15705229 TTACCAGAATGTTCCCTCTCC 59 15705270 15705985 CCTATCCAGGTCTGGAAGTC 59 NA Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 2 2 2 80 10 15705208 15705229 TTTACCAGAATGTTCCCTCTCC 60 15705269 15705984 CTATCCAGGTCTGGAAGTCC 59 NA Rattus norvegicus 81 Gapvd1 ENSRNOG00000017925 ENSRNOT00000066961 1 1 1 80 3 13767687 13771804 TTCTCAACACTCACAGACGA 59 13767626 13767646 TCGGTATTTGTCCAGAATGTC 58 NA Rattus norvegicus 81 Amn ENSRNOG00000009050 ENSRNOT00000012469 2 1 1 158 6 135725333 135729621 ATCTCGGATATGCTCCTGC 59 135729858 135729876 CCATAGGTGAGGGTCAAGC 60 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 3 2 2 80 16 48960073 48960091 ACAATGATCTGGTGGAACG 58 48955497 48960030 TCACTCTTCCAAGATCCTCC 59 NA Rattus norvegicus 81 RGD1561795 ENSRNOG00000009203 ENSRNOT00000012217 3 1 1 101 8 13285940 13290568 CTCGCCAACAATGGAAGAC 59 13285857 13285876 TCACGTGACATTCATCCCTC 60 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000074888 3 1 2 88 7 118965957 118965981 GAGATCTTTGAAGATTCTGATGGAG 60 118966025 118968429 AAGGCATCTTCCTCTTTCCTC 60 NA Rattus norvegicus 81 Fam150b ENSRNOG00000005154 ENSRNOT00000006921 1 1 1 82 6 49826197 49828212 GAGAGTGGAGATTGTTCCTC 57 49828335 49828355 TCGGACTGAAATAAAGAGGAC 58 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 1 2 2 80 2 114238674 114238694 ATTGCTACATACTACGGTGCT 59 114238734 114259195 ACAGAACTCCATAACCAACCA 59 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 2 2 2 80 2 114366872 114366890 GGACCCTAGAGTGTACCAG 58 114366934 114367711 CTAGTAAACAGGGCAGCAG 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000088678 2 2 6 60 1 41323245 41323264 CATTCGAGCACATTCCTTCC 59 41323284 41323305 ATGGGTTTGTAGAAGTCAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpot ENSRNOG00000007088 ENSRNOT00000009645 3 1 1 81 7 63708726 63708746 GGAGTTCTTTGAAACTGTCGT 59 63708219 63708685 GAAAGCCATTAGTACACAGGG 59 NA Rattus norvegicus 81 AABR07065656.3 ENSRNOG00000049243 ENSRNOT00000075363 2 1 1 83 6 138900657 138900679 CCTATACCTGCAAATGGATAGTC 59 138900553 138900616 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 Akt1 ENSRNOG00000028629 ENSRNOT00000031164 3 1 1 81 6 137223643 137223661 GTTCACCCAGTGACAACTC 58 137223175 137223598 AACTCGTTCATGGTCACAC 58 NA Rattus norvegicus 81 Cml3 ENSRNOG00000015763 ENSRNOT00000021103 2 1 1 60 4 117490501 117490520 CTTACCCTCCTTGTTTCCCT 59 117490460 117490478 TTGCCGTATACTTCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912282 ENSRNOG00000015447 ENSRNOT00000021523 3 1 1 80 7 145444304 145444325 AGTTAGAGGATGACATCCAGAC 59 145442498 145444264 TCACCATGTCTCTAACCCTG 59 NA Rattus norvegicus 81 Pacs2 ENSRNOG00000014744 ENSRNOT00000056880 3 1 1 80 6 137877029 137877048 ACATCCTCATCTCCGATGAC 59 137877091 137877274 CTGAGAGGAACTGTCCCTG 59 NA Rattus norvegicus 81 Ubc ENSRNOG00000057823 ENSRNOT00000085692 1 1 1 78 12 36638484 36640237 CTGACAATGCAGATCTTTGTG 58 36640277 36640295 TTTCAATGGTGTCACTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Qdpr ENSRNOG00000003253 ENSRNOT00000004385 1 1 1 80 14 70170238 70170256 AAAGCACCTGAAGGAAGGA 59 70170300 70172996 TAGCCAATCATCCCAGGAG 59 NA Rattus norvegicus 81 LOC100363184 ENSRNOG00000042531 ENSRNOT00000002135 2 1 1 60 11 28693149 28693170 CCCTATAGAACCTGTCAGTCTC 59 28693191 28693209 AGAATCCAGATCCAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011,ENSRNOT00000085516 3 2 2 80 18 24869738 24870603 AAGATTCTGCAAGAGCTACC 58 24870644 24870664 ATACAGATACATCACTGCTCG 58 NA Rattus norvegicus 81 Hsd3b1 ENSRNOG00000019441 ENSRNOT00000026306 1 1 1 80 2 202342552 202343791 AGATGTCAATCTGAAAGGTACC 58 202342493 202342511 GTGCTGCAGTAGATGAAGG 58 NA Rattus norvegicus 81 Vtcn1 ENSRNOG00000015279 ENSRNOT00000020566 2 1 1 81 2 203261046 203261068 CCTACACATGTTATATCCACACC 59 203261109 203265477 TCTGGCATACTGAAGGCTC 59 NA Rattus norvegicus 81 Vamp2 ENSRNOG00000006989 ENSRNOT00000057295 1 1 1 60 10 55676202 55676220 ACCAGTAACAGGAGACTGC 59 55676244 55676769 TCATGATGTCCACCACCTC 59 NA DesignRelaxed Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 1 3 3 86 2 200798231 200798249 CAATGAAGCACAACGTCCA 59 200798297 200806602 TCAGAGCATCAATTGAAGCAG 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978,ENSRNOT00000086117 3 2 2 90 11 87375334 87375354 GGACGTGAGAAATAAGAAGGT 58 87375406 87375512 GGTCTTAGGGCTACTTCCT 58 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000085811 2 1 2 80 1 264509119 264537895 CATCAACAGTTCCCAGCAC 59 264537939 264537957 TCCCGTTGATGGAGTAGGA 60 NA InUTR Rattus norvegicus 81 Tmem39b ENSRNOG00000023746 ENSRNOT00000032558 2 1 1 107 5 147906861 147906879 TTCTGTCAGCTCATAGCCC 59 147906175 147906790 CAGGTGGAAGTTCAGGGAG 60 NA Rattus norvegicus 81 Ampd3 ENSRNOG00000018262 ENSRNOT00000024933 1 1 1 80 1 175627868 175627886 AAGTTGAGTACGTGTGACC 57 175627929 175628808 CTTCTGCTTCTCCTGATGTG 58 NA Rattus norvegicus 81 AABR07065651.1 ENSRNOG00000046572 ENSRNOT00000071492 1 1 1 130 6 138772546 138772564 AATCCCGACTGAGCATCAG 60 138772063 138772452 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Rac3 ENSRNOG00000048172 ENSRNOT00000073886 3 1 1 97 10 109905883 109905902 ACAAGGACACAATTGAACGG 59 109905960 109906118 GTACTTGACAGAACCGATCTC 58 NA Rattus norvegicus 81 Dhx58 ENSRNOG00000018247 ENSRNOT00000024718 3 1 1 80 10 88610056 88610315 GTAGAGCTCACAGAATTCTCG 58 88609996 88610016 CAAGATGGTGTTGTAGATGGT 58 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910,ENSRNOT00000076336 2 3 3 80 X 70974877 70974895 GACCTCATGTCAATCGGGA 59 70974363 70974835 TTGGTCAGGCTGATATCTGAG 59 NA Rattus norvegicus 81 Taf1b ENSRNOG00000061415 ENSRNOT00000086798 2 1 1 80 6 43664639 43664657 CGCTACCTTCAGAAGAGCA 60 43664697 43671883 GTCTTCTAATACCTTGGCTTTCC 59 NA Rattus norvegicus 81 Fgf22 ENSRNOG00000008960 ENSRNOT00000011936 3 1 1 89 7 12830156 12831497 GCCAGGACAGTATTGTTGAG 59 12830086 12830106 GATTCATGGCCACATAGAAGC 60 NA Rattus norvegicus 81 dsr-2 ENSRNOG00000060470 ENSRNOT00000080308 3 1 1 62 6 112526805 112526823 GTTTGTGTTGTGCTTGCAC 59 112526761 112526784 GCCCTATTACCTACATTTATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyb5d1 ENSRNOG00000045742 ENSRNOT00000074505 1 1 1 80 10 55997030 55997049 CTACTGTTGAAACCCATCCT 57 55996842 55996987 CTTGCGAATGTCTTTGGTC 57 NA Rattus norvegicus 81 LOC100360611 ENSRNOG00000033115 ENSRNOT00000051772 3 1 1 60 11 82416110 82416130 TTGTAGACATCAAGGGAATGG 58 82416152 82416170 CCGTGGTAACACTTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000018523 3 1 2 81 9 15382745 15382765 CAGTATTGTGACTTCCTGGTG 59 15380797 15382703 CATACTCCACCTCCACAGAG 59 NA Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000088314 2 1 2 82 9 15389770 15389789 TGGACTGTGAAACTTACCAC 58 15380772 15380790 CAGTCACTAGCTACCACAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC687631 ENSRNOG00000047532 ENSRNOT00000071454 1 1 1 108 20 11597188 11597206 CCAGCAGTCTAGCTGTGAG 60 11597278 11597296 TTCAGAGCAGATGGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cgref1 ENSRNOG00000007923 ENSRNOT00000010586 1 1 1 80 6 26807641 26807659 CTGCGGGATTATCTCAAGG 58 26807701 26808002 GAGATATAGCAGGACTTGCTC 58 NA Rattus norvegicus 81 LOC100361444 ENSRNOG00000011490 ENSRNOT00000015381 2 1 1 81 8 22857084 22857103 GTACGGAGACTACAAGTGCA 60 22857144 22858069 CGGCTCGATCCTTTAAATTCTC 60 NA Rattus norvegicus 81 Man1a2 ENSRNOG00000015226 ENSRNOT00000067000 3 1 1 80 2 202905535 202905555 AACCTATTGGTATCTATGGCG 58 202902943 202905493 TTCTCAATAGCCAATGCGG 58 NA Rattus norvegicus 81 Capn9 ENSRNOG00000018480 ENSRNOT00000025357 1 1 1 80 19 57356114 57356133 GCACCAGAGGATTTCTACGA 60 57356173 57357311 ATTCAGGGTATCTATGGAGCAG 59 NA Rattus norvegicus 81 Mybpc2 ENSRNOG00000019627 ENSRNOT00000067754 2 1 1 80 1 100521549 100521567 GAGATCAGTGACCCAGACC 59 100521372 100521507 CTCAAACACATACTTGCTGCT 59 NA Rattus norvegicus 81 Shfm1 ENSRNOG00000010420 ENSRNOT00000013841 2 1 1 89 4 32067893 32069842 CAATCAGTTACGCGCTGAG 59 32067822 32067843 AGTCCATGTTTAAGTTCCTGGA 60 NA InUTR Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 3 2 2 81 7 12772112 12772130 TACCACTACCGCTTTAACG 57 12771957 12772068 AGTAGATCATGGAATGCTGG 57 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 3 2 2 80 10 88513967 88513985 CAGCATGTCGTAGTTTCCA 58 88510974 88513924 CATTGGCATTCTTGAACTCC 58 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 2 2 2 80 7 126759572 126759593 GATCTTAGACATCCCTTTCCAC 58 126759632 126761573 TACTCGTTCAGAAAGTCACTG 58 NA Rattus norvegicus 81 Skint10 ENSRNOG00000022988 ENSRNOT00000033163 3 1 1 81 5 133056173 133056192 CTTATCTGGGAGTGTCTGCT 59 133053299 133056130 AAATAGAAGCTTGGCTCCTG 58 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 2 2 2 80 11 89034700 89034718 GAAGGAGACACCATTTCCA 57 89034551 89034658 ACCATGTTCATTAGTCTGGAG 58 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 1 2 2 88 8 49096435 49096726 CATGATCTGTGCCATCCTG 58 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 1 2 2 83 1 47296042 47296063 GGAGTGAAATCAGGAACATCTC 59 47292112 47295998 AGAACACGAAGTCAGGAGC 60 NA Rattus norvegicus 81 Galnt1 ENSRNOG00000016207 ENSRNOT00000022117 1 1 1 80 18 16146621 16146641 CTGCTTTACTTCAGTGAATGC 58 16146683 16153632 CACCAGCTCTAGAACATCC 57 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000086185,ENSRNOT00000077999 1 2 3 80 8 78068978 78068998 GAAGGAAATGGTGGTGTATGG 59 78065492 78068936 AATGTAGCCCTCACATCCT 58 NA Rattus norvegicus 81 Wdr91 ENSRNOG00000010421 ENSRNOT00000014010 2 1 1 80 4 62435053 62435071 CCTGAACTTTGATGCGGAG 59 62433726 62435009 AGTGCAAAGAGCTTCTGAC 58 NA Rattus norvegicus 81 Wdr91 ENSRNOG00000010421 ENSRNOT00000014010 3 1 1 80 4 62435054 62435072 TCCTGAACTTTGATGCGGA 59 62433727 62435010 GTGCAAAGAGCTTCTGACG 60 NA Rattus norvegicus 81 Rprd1a ENSRNOG00000016036 ENSRNOT00000021624 2 1 1 80 18 16474360 16474379 TTATCCATTTGGGAAGAGCG 58 16474151 16474320 CTTCTTATCTCCATACAGAGCG 58 NA Rattus norvegicus 81 Rimbp3 ENSRNOG00000030452 ENSRNOT00000051991 1 1 1 60 11 88034507 88034525 CTTCTCCAGGGTTCATCCA 59 88034465 88034484 TCCCAACACAGTATCTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrnp35 ENSRNOG00000001060 ENSRNOT00000001402 2 1 1 80 12 37532103 37538324 ACACTTAAGAACATGAGCGA 57 37532042 37532060 ATCTGTACCATCGATGCTG 57 NA InUTR Rattus norvegicus 81 Gucy2g ENSRNOG00000015724 ENSRNOT00000021746 1 1 1 80 1 276215434 276216899 AGAAAGTAATCAGACCCTGGAG 59 276215375 276215395 CACAGTCGGGTTTGTATTCAG 59 NA Rattus norvegicus 81 Asb4 ENSRNOG00000009197 ENSRNOT00000012657 2 1 1 80 4 30492242 30498144 AGTTCCACAAGGTGATCCAG 60 30498187 30498205 ATCTGATGTGCTCGTAGGC 60 NA Rattus norvegicus 81 LOC100363287 ENSRNOG00000029293 ENSRNOT00000049858 3 1 1 60 11 28724742 28724760 CTATGGCTTCCCTTCCCTG 60 28724784 28724802 AGAAGCCAAGTAGGTTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036035.1 ENSRNOG00000022784 ENSRNOT00000029702 2 1 1 114 12 31759568 31759586 GTGGATGTGTATTGGAGCC 58 31759467 31759487 ATGGGTCGATGAAGGTGAG 59 NA Rattus norvegicus 81 Krtap19-5 ENSRNOG00000040068 ENSRNOT00000061610 3 1 1 60 11 28842137 28842155 GGCAGATACGGATATGGCT 59 28842095 28842113 AGCGGGAGAATCCATATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkal1 ENSRNOG00000018381 ENSRNOT00000024854 3 1 1 80 17 37125129 37125150 AAACCAGAGTCTATACACCCTC 59 37125190 37294791 AATAATCCAGAGCCGTTGTC 58 NA Rattus norvegicus 81 Set ENSRNOG00000034241 ENSRNOT00000051397 3 1 1 197 19 58419986 58420638 CTAAGTCTGGAAGCCATGG 58 58420799 58420817 GGCTTGTTCATTAAGCCTG 57 NA InUTR Rattus norvegicus 81 Klhl31 ENSRNOG00000006224 ENSRNOT00000008244 2 1 1 81 8 84945485 84959653 GGATCCTAGGTGAGCTGTG 59 84959695 84959716 GGGTTTGTTCTTCTTGAGAGTC 59 NA InUTR Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 2 2 2 92 17 9836506 9837060 CCCTATAGCAAACATGTCTTAACC 60 9836437 9836455 GGTCTTGGTCAGGAGTCTC 59 NA Rattus norvegicus 81 Rpl31l3 ENSRNOG00000029926 ENSRNOT00000049211 2 1 1 60 7 35550030 35550049 AGGCTCAATAAAGCCATCTG 58 35549989 35550007 GTACTCGGATGTGGTACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il31 ENSRNOG00000026192 ENSRNOT00000030573 2 1 1 60 12 38535140 38535161 GTCGAAGGCTCTTTATGAAGAC 59 38536836 38536854 CTCATCTGGCGATATCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Il31 ENSRNOG00000026192 ENSRNOT00000030573 3 1 1 60 12 38535130 38535148 TGAAAGAGGAGTCGAAGGC 59 38536826 38536844 GATATCCCAGATGCCTCGG 60 NA DesignNoJunction Rattus norvegicus 81 Naa15 ENSRNOG00000012385 ENSRNOT00000017379 1 1 1 80 2 140500397 140501538 AAACACAGCAGACATCTCCT 59 140501578 140501599 CTTCCCGAAGAACTTGATTCTG 59 NA Rattus norvegicus 81 Camta1 ENSRNOG00000018602 ENSRNOT00000066120 2 1 1 80 5 168155455 168156693 GTACAAGCAGCTGACATGG 59 168154427 168154445 TTGCTCTGGATGAGGATGG 59 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000072207 1 1 2 60 10 70399161 70399180 GAGGAAGGTCACCTTTAGCA 60 70399200 70399221 TCTTCTTGTAAACCATCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118,ENSRNOT00000090751 1 2 2 80 4 27272071 27272089 AGAGACAACGAGAAGACCA 58 27270971 27272027 CTATGGAGGATCTCTGGGT 57 NA Rattus norvegicus 81 LOC100909620 ENSRNOG00000049821 ENSRNOT00000075282 2 1 1 80 1 81556177 81556196 AGTCCAACCTTGTTCTATGC 58 81555837 81556134 AGATACTGAGGCTACCTCC 57 NA Rattus norvegicus 81 Scrn1 ENSRNOG00000009636 ENSRNOT00000013088 1 1 1 80 4 84706751 84706769 CAATGAAGCCATCAATGCC 58 84698498 84706707 TCTAAACCAAGCCTGACCA 59 NA Rattus norvegicus 81 Tssk5 ENSRNOG00000013753 ENSRNOT00000018528 1 1 1 80 7 117437604 117437707 CTACCCGAGAACAGAAGCA 59 117437542 117437560 TCCTGCTATACCTGGTGTC 58 NA Rattus norvegicus 81 Rgs18 ENSRNOG00000003959 ENSRNOT00000005324 3 1 1 82 13 61567615 61567634 GAACCTCAACAACTCATCCT 58 61565730 61567572 TCAAGGTTAACCTCTTTAGGG 57 NA Rattus norvegicus 81 Hyou1 ENSRNOG00000010944 ENSRNOT00000044613 3 1 1 80 8 48707946 48707964 ATAGGTGTGGAACTGGCTG 59 48708008 48708121 GTCCTCAAGTTTCTGCACG 59 NA Rattus norvegicus 81 AABR07031533.1 ENSRNOG00000049802 ENSRNOT00000072093 1 1 1 60 18 18079448 18079468 GCATATGAACGGATTAAGCCA 59 18079408 18079428 GTGGTCCTTCATAGGAATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Blvrb ENSRNOG00000024410 ENSRNOT00000031026 3 1 1 80 1 84268655 84268673 GATGTGGACAAGACTGTGG 58 84268715 84268877 TACTGTAGTAGGACTGAGGTC 58 NA Rattus norvegicus 81 Mir3582 ENSRNOG00000035651 ENSRNOT00000053774 2 1 1 60 18 2052481 2052499 ATGCATAGCTACAGCTGGT 59 2052523 2052541 AATGGAACCAAATCGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550816 ENSRNOG00000040058 ENSRNOT00000061599 1 1 1 60 11 29008363 29008381 TATGGCTATGGCTGTTGTC 57 29008405 29008423 AGTAGAAGCCATAGGACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec2e ENSRNOG00000052128 ENSRNOT00000077791 2 1 1 81 4 162855675 162855693 CTTCTCTGCTGCTATCGAG 58 162853047 162855631 CCTTTCTCACTGACAAAGCA 59 NA Rattus norvegicus 81 Fcgbp ENSRNOG00000019129 ENSRNOT00000057122 1 1 1 80 1 85035561 85035582 GTGTCACTCTGCATATCTATGG 59 85035623 85036080 CGAACTCTCCATTCACCTG 58 NA Rattus norvegicus 81 Rnf34 ENSRNOG00000001331 ENSRNOT00000001799 3 1 1 82 12 39167764 39167985 CTTAGAGGAACAGAACCCGG 60 39167701 39167719 CTTCCACCTCTTCAAGGCT 59 NA Rattus norvegicus 81 Cdk20 ENSRNOG00000017991 ENSRNOT00000024466 3 1 1 80 17 1936795 1936816 GAGGATGGTATTCCTAACCAGG 60 1936854 1939173 CAGCTGTACCACATATTGACTG 59 NA Rattus norvegicus 81 Wdr33 ENSRNOG00000011382 ENSRNOT00000017075 2 1 1 80 18 24669819 24670493 GACGGAGTAGAGTATGATGAC 57 24670534 24670553 CAGTTTCAGTTGTTCTGGGA 58 NA Rattus norvegicus 81 Hpd ENSRNOG00000001338 ENSRNOT00000001809 1 1 1 80 12 38835969 38836106 AGTCTCAGATCCAGGAATATGTG 60 38836145 38836164 TGATGATGTCTTCGGTCCTG 60 NA Rattus norvegicus 81 Tecpr2 ENSRNOG00000021904 ENSRNOT00000030864 1 1 1 80 6 135401958 135402471 GTATCCTGTTTCACAGTGACC 59 135402513 135402531 CTTTGTCAGTCGCTGAAGG 59 NA Rattus norvegicus 81 Kat2a ENSRNOG00000018364 ENSRNOT00000055250 1 1 1 80 10 88617701 88617807 GGTCAATTATACCAGATGGCTC 59 88617642 88617661 ACATGGGTGGTCTCATATCG 59 NA Rattus norvegicus 81 Mib2 ENSRNOG00000017564 ENSRNOT00000023696 3 1 1 80 5 173084879 173084899 GATGTCACTGCTACCAATAGC 59 173084696 173084840 CTTTCTAACTGCTAGCACATGG 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000044511 2 1 3 80 1 199061458 199061611 CAATGTTCACAGAGGTGCTG 60 199061397 199061415 CCCAAGATGATCTCCTCCC 59 NA Rattus norvegicus 81 Chkb ENSRNOG00000011404 ENSRNOT00000015374 3 1 1 80 7 130406533 130406733 ATGGAGCGGTACCTAAAGC 60 130406471 130406489 GAGGCTGTACATCTCCACC 60 NA Rattus norvegicus 81 AABR07012658.1 ENSRNOG00000045536 ENSRNOT00000071087 3 1 1 118 2 201677914 201677932 ACTTCACAGCGATGAGAGG 60 201677795 201677832 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Fam69a ENSRNOG00000023533 ENSRNOT00000030479 2 1 1 89 14 2854696 2857200 AACAACCAGATGTACTTAGGC 58 2857250 2857269 AGTTCCAAAGTCAAGATGGG 58 NA Rattus norvegicus 81 Pdcd2 ENSRNOG00000001490 ENSRNOT00000002040 1 1 1 80 1 57516927 57516948 CAGAAACAGAAGACGAGATTGG 59 57514289 57516886 GTACTCCCTCCATGCTTCC 60 NA Rattus norvegicus 81 Olr1452 ENSRNOG00000033492 ENSRNOT00000043989 3 1 1 60 10 44714243 44714264 TTCTCTTAGGACTCTTTGACCA 59 44714284 44714303 GTCAGAACCAGCACAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng7 ENSRNOG00000056257 ENSRNOT00000089944 3 1 1 89 1 64399691 64400058 GGAGAATATTCTGAAGACAGTACG 59 64399625 64399643 ATGTTGCTGATGACGAAGG 58 NA Rattus norvegicus 81 Gbp5 ENSRNOG00000032240 ENSRNOT00000037339 1 1 1 80 2 248191648 248191669 CCATAGAAATCTTCAGGAAGCG 59 248191709 248192796 TTGCACTTAGTAGGCTCTCC 59 NA Rattus norvegicus 81 Gemin7 ENSRNOG00000049772 ENSRNOT00000074418 2 1 1 144 1 80481899 80483368 CTACTCTCGGAGCTTTCCA 59 80481773 80481793 GGAATGCATCTGAAGCTAGAC 59 NA InUTR Rattus norvegicus 81 RGD1310166 ENSRNOG00000003143 ENSRNOT00000004193 2 1 1 83 10 72486283 72488132 ATAAGCCACTAGAGAAGGTGG 59 72488177 72488195 GACGGACCAGAACATCTCC 60 NA Rattus norvegicus 81 Gfra1 ENSRNOG00000017438 ENSRNOT00000023667 2 1 1 80 1 279248431 279276957 ACCAATTACATCTGCAGATCTC 58 279248372 279248390 AAGACAGTTGCTGACAGAC 58 NA Rattus norvegicus 81 Hs3st6 ENSRNOG00000014672 ENSRNOT00000052008 1 1 1 81 10 14123349 14123367 TCGACAGGTGCTATGATCG 59 14128287 14128305 TTCTCCATGGTGATCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1559489 ENSRNOG00000038174 ENSRNOT00000031284 3 1 1 100 7 65720075 65720093 ATTACATCTCCAGAGGCCG 59 65720157 65720237 CAGCTGATGATTCTGGTGC 59 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 1 2 2 80 6 135786703 135786722 GTTCTACATTGGCGAGATGG 59 135780459 135786662 TTGTCGGGTTTAATGTCTCTG 58 NA Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 2 2 2 80 9 16655692 16655710 AGCTATCTATGAGCGCCAG 59 16655753 16656089 TTTAGGTAGCAGGAAGCCAG 60 NA Rattus norvegicus 81 Grin2c ENSRNOG00000003280 ENSRNOT00000004477 1 1 1 86 10 103803188 103803206 AGCTATACGGCCAATCTGG 59 103802777 103803139 CCGCTGAAACTTCTTGTCAC 60 NA Rattus norvegicus 81 Fbln7 ENSRNOG00000017550 ENSRNOT00000023708 2 1 1 80 3 121423549 121433351 CTGTAGAGATACCAGTGAATGC 59 121433392 121433410 CATCTGTAGTGGTGGACAC 58 NA Rattus norvegicus 81 Lpin3 ENSRNOG00000016636 ENSRNOT00000022403 1 1 1 80 3 156896220 156897143 CTCTTCCAATCAGATCCGGT 59 156897185 156897204 CCTTGGTACTGGGTAGTCAC 60 NA Rattus norvegicus 81 AABR07042866.1 ENSRNOG00000013826 ENSRNOT00000018484 3 1 1 81 19 12971527 12971546 GCAAAGAAAGTTGCATGCAG 59 12971462 12971484 AGAAAGGCCGATCTCATCTC 59 NA Rattus norvegicus 81 Stra8 ENSRNOG00000010573 ENSRNOT00000014093 2 1 1 80 4 62470770 62473300 ACTCCATTAAACCAGGAACCA 59 62473340 62473360 TTCATCATCGAAGGTCTCCAG 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000085873,ENSRNOT00000077168,ENSRNOT00000091832,ENSRNOT00000089428,ENSRNOT00000092034,ENSRNOT00000024682,ENSRNOT00000079628,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 15 18 60 1 43507444 43507463 CTGCCTGTAATGTTCATGGC 60 43508249 43508268 TGAGGGTGCAATCTATGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815,ENSRNOT00000028786 1 2 2 80 9 16765438 16765456 GCCTTTCCTTCTGTTGCTG 60 16765500 16765591 GTCATGACCCTGAGTACGG 60 NA Rattus norvegicus 81 Polh ENSRNOG00000019195 ENSRNOT00000026049 2 1 1 80 9 17166722 17167366 AGGTGGTGGAATTATTGCAG 58 17167409 17167427 TTCTTAGCATCATCAGCCC 57 NA Rattus norvegicus 81 Tarsl2 ENSRNOG00000024460 ENSRNOT00000051000 3 1 1 80 1 126558876 126558894 TTTAACCGGCTTAACCCGA 59 126558937 126559230 GGCAACTTTAACTGCTCCAC 60 NA Rattus norvegicus 81 RGD1565367 ENSRNOG00000026919 ENSRNOT00000038950 2 1 1 80 4 62482687 62482706 CTTCTCAATCTTCTGTGGGC 59 62482534 62482645 AGCTGGAGAATTCCTGTCTG 60 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 1 1 1 60 10 54246615 54250716 GTTGGAGATCGTCATGGCT 60 54250740 54250758 TGGGAGGTTCTTCACATCC 59 NA DesignNoJunction Rattus norvegicus 81 Trabd ENSRNOG00000029095 ENSRNOT00000052087 1 1 1 80 7 130064491 130065041 ATGTAGTGAAGACTATCCGGG 59 130065083 130065101 TCTTCAGCATGGAAACACG 59 NA Rattus norvegicus 81 Prpf31 ENSRNOG00000061039 ENSRNOT00000091739 1 1 1 80 1 64153472 64153491 AGATGAAAGAACGGCTAGGA 59 64152896 64153429 AGGCATCCTCCTCAATCTC 59 NA Rattus norvegicus 81 Rn60_10_0700.5 ENSRNOG00000053872 ENSRNOT00000085054 2 1 1 60 10 70350951 70350969 TGAGCTGGGAAATGAACTG 58 70350909 70350929 AGTTTAGCTGTTAAGAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taz ENSRNOG00000053023 ENSRNOT00000089778 2 1 1 80 X 156427375 156427393 CATCTGCTTCACCAAGGAG 58 156423112 156427331 TAGACACCATCTCCTCGAC 58 NA Rattus norvegicus 81 Hist1h2af ENSRNOG00000022146 ENSRNOT00000022965 1 1 1 65 17 43627498 43627516 CAACTACTCGGAGAGGGTG 59 43627451 43627469 GTCAGGTACTCCAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep170b ENSRNOG00000033688 ENSRNOT00000030246 3 1 1 80 6 137295416 137295435 GCATGCTGTCATCAACTACG 60 137295475 137296194 TTCACAAATGTCCCATTGAGAC 59 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564,ENSRNOT00000078969 2 2 2 80 18 27640192 27640303 GGACTTAGGAGATGAGCCC 59 27640345 27640365 TCATCTTCTGAGGTCTCTGTC 59 NA Rattus norvegicus 81 Thoc3 ENSRNOG00000000104 ENSRNOT00000000116 3 1 1 80 17 10679454 10679472 GATCTCGTGGAACAACGAC 59 10679516 10681680 AGTTCTGGGTAGCTGAGGA 60 NA Rattus norvegicus 81 Shc2 ENSRNOG00000008030 ENSRNOT00000010714 3 1 1 97 7 12958510 12958528 TTAACTTGTCAGTTCCCGC 58 12961324 12961465 GTAATCGGTCATGTCCGTG 58 NA Rattus norvegicus 81 Shisa3 ENSRNOG00000025670 ENSRNOT00000036103 3 1 1 211 14 42220577 42220595 CTATCACGAAGGGTTCCAG 57 42218006 42218024 CAATGAAGATGGAGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 2 2 2 80 11 86704183 86704204 GTACTTTAACATCAAAGCCAGC 58 86703056 86704142 GAAAGCTGAGTCACCTTCC 58 NA Rattus norvegicus 81 Nphp3 ENSRNOG00000048978 ENSRNOT00000014636 2 1 1 80 8 112571392 112572129 AACAATCTTGAGACAGCAGAG 58 112572171 112572189 GTCTGGATGATCTGGTCCC 59 NA Rattus norvegicus 81 Ctnnbl1 ENSRNOG00000012021 ENSRNOT00000066808 3 1 1 80 3 154318440 154318461 TCTTTCCACTCTTCATGAAGTC 58 154318502 154351336 AACAGACATGCTCTTCGTG 58 NA Rattus norvegicus 81 RGD1562963 ENSRNOG00000039379 ENSRNOT00000060340 2 1 1 80 17 21600686 21600704 GGACCTTGGGCTATTCCAG 60 21604716 21608993 ATGAAGGTTTGGGTCTCTGAG 60 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601,ENSRNOT00000071846 1 2 2 80 8 23338646 23338665 TCCGACCACAAAGAGAAGAC 60 23337734 23338603 AGAGCCAGTTCTTGGTGAC 60 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 2 2 2 80 1 85116538 85117787 CTACATAGTACACCTGAAGCG 58 85117829 85117847 TACAGGTTGTAGGACAGCA 58 NA Rattus norvegicus 81 Ubald2 ENSRNOG00000010029 ENSRNOT00000013359 3 1 1 153 10 105393110 105393128 GATCAACCAGTTCGTGCTG 59 105393376 105396563 AGTACACATCATCTGCGGG 60 NA Rattus norvegicus 81 LOC690821 ENSRNOG00000049623 ENSRNOT00000052197 3 1 1 82 8 20780912 20781071 TATGGACCTCAAAGGGTGTC 59 20781114 20781134 CTGAGAGGCTCATAAGATGGA 59 NA Rattus norvegicus 81 Lpcat2b ENSRNOG00000055849 ENSRNOT00000080875 3 1 1 98 14 3357523 3357541 CATCAAACCCAACGCAGAG 60 3357440 3357466 CGGCGGATATAAAGACTTATTCAC 60 NA Rattus norvegicus 81 Nudt14 ENSRNOG00000014362 ENSRNOT00000019550 1 1 1 93 6 137741834 137742268 CATGACAGTGTGACGATTCTC 59 137741550 137741568 CTACCTCGCCTGCATAGAC 60 NA Rattus norvegicus 81 Prpf40a ENSRNOG00000004864 ENSRNOT00000006549 3 1 1 80 3 38727904 38727922 CCATGCAACCTGCTTTACC 60 38705988 38725603 TCCACATTGATTTCGCACC 59 NA Rattus norvegicus 81 Vom1r21 ENSRNOG00000039019 ENSRNOT00000059668 2 1 1 60 19 28377504 28377525 TATCTTCACAGAATAGGGAGGG 59 28377545 28377564 GGAAGACACTCAGAAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdc ENSRNOG00000002517 ENSRNOT00000003405 1 1 1 80 13 67555504 67555523 AGATCCTCAGACAAATGTCC 57 67555565 67557632 GAATGCTCATCTTTCTGCTC 57 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000045539 ENSRNOT00000057475 3 1 1 81 4 117620585 117620818 CGTCGTGTCAGAAAGAACC 59 117620522 117620543 GGACTTGTTCTGTAAGATGTGC 60 NA Rattus norvegicus 81 Suv39h1l1 ENSRNOG00000039576 ENSRNOT00000008399 2 1 1 90 X 15182385 15182403 CTTTGACCTGGACTACGTG 58 15182455 15182560 GGGATCACAACTATGGTTGAC 59 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000019478 1 1 2 92 17 22635017 22635035 GTCCCTCTTCCACTACGAC 59 22635091 22639969 CTGCAGTTGTTCATTGCGT 60 NA Rattus norvegicus 81 LOC364556 ENSRNOG00000032995 ENSRNOT00000049187 1 1 1 80 16 28155189 28157462 CTCATACCTAGCAGATCCCA 58 28155128 28155148 GTAGATGCTTCAGTCCTACTC 57 NA Rattus norvegicus 81 Bnip1 ENSRNOG00000020753 ENSRNOT00000028173 2 1 1 80 10 16677675 16678681 TGCAGACTCTAGTCAGCTC 59 16677613 16677632 CCAACTGAATGGTTCCTGAC 59 NA Rattus norvegicus 81 Usp33 ENSRNOG00000011294 ENSRNOT00000066125 3 1 1 80 2 257580856 257580876 CACGTTTATCAGCAAGTCCTC 59 257580915 257584414 ATGAAGACTGAGCTTTCTTGTG 59 NA Rattus norvegicus 81 Cphx ENSRNOG00000025433 ENSRNOT00000035065 3 1 1 81 16 3790787 3790807 CCTTATCCAGATTTCACGACC 59 3788298 3790747 TCTGAAACCAGTTATCGATCAC 58 NA Rattus norvegicus 81 Cux2 ENSRNOG00000001259 ENSRNOT00000001697 1 1 1 80 12 40215317 40218140 GTTCCACAACTACAGGTCC 58 40218184 40218202 CCACTTGGGTCAAAGTCTG 58 NA Rattus norvegicus 81 Zfp647 ENSRNOG00000050651 ENSRNOT00000075636 1 1 1 80 7 118515000 118517482 AAGTGATCACTCAGAATGCA 57 118514939 118514958 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Igf2bp2 ENSRNOG00000025946 ENSRNOT00000036958 2 1 1 80 11 82554511 82554530 CACTCCGGATACTTCTCCAG 59 82554573 82556121 CTCTTGCTCTGGGTACGAG 60 NA Rattus norvegicus 81 Nsun7 ENSRNOG00000025494 ENSRNOT00000039835 2 1 1 86 14 43559141 43559161 CAGAGACAGTTAGGAAACAGG 58 43558741 43559096 CTTCTTCAAGGCTTACTTTACC 57 NA Rattus norvegicus 81 Fahd2a ENSRNOG00000013974 ENSRNOT00000018922 1 1 1 80 3 120007225 120007244 ATCTTCAGCAAGTTCTCCAG 58 120005488 120007184 CCAGTCAACTTCCTTACTCTC 58 NA Rattus norvegicus 81 Olr1251 ENSRNOG00000046136 ENSRNOT00000071452 3 1 1 60 4 1671797 1671816 TACTTCTGTGATCTCCTCCC 58 1671837 1671857 TCTCATTGACATAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agt ENSRNOG00000018445 ENSRNOT00000024917 3 1 1 81 19 57327143 57327162 AGATGAACTTGCCACTAGAG 57 57324472 57327100 CTCATCTTCCCTTGGAAGTG 58 NA Rattus norvegicus 81 Aars2 ENSRNOG00000025808 ENSRNOT00000031549 3 1 1 80 9 17871567 17871778 GACGTCTCATTGAGTTCACAG 59 17871507 17871526 GTAGCATCTTCAGTGTGGTC 58 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 2 2 2 157 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664470 15664489 AGGTTTCATGAACATGCCAC 59 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 3 2 2 158 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664469 15664488 CAGGTTTCATGAACATGCCA 59 NA Rattus norvegicus 81 Obfc1 ENSRNOG00000020376 ENSRNOT00000027614 2 1 1 80 1 267287401 267289762 CTGTACTATGTTACCAGTAAGGAC 58 267287344 267287365 ATTTGGTTTCTGACAGTCTTCC 59 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 2 2 2 80 4 168221645 168230126 ACCTGTAGTGCTCCTACCA 60 168221583 168221604 ACTCTGTTGTTCATCAATCACC 59 NA Rattus norvegicus 81 Tmem167a ENSRNOG00000016686 ENSRNOT00000022377 2 1 1 103 2 18937511 18937529 TACGTGTGCTTATGTGCGA 60 18940039 18943502 TCTTGCGTTCACCAATTCG 59 NA Rattus norvegicus 81 Tmem109 ENSRNOG00000028017 ENSRNOT00000038807 3 1 1 88 1 226927093 226927111 CTCATCAGCCATCTCTGTG 58 226926584 226927041 TGAGTTGTTCACCATCCAG 57 NA Rattus norvegicus 81 Olr1353 ENSRNOG00000046386 ENSRNOT00000056601 3 1 1 61 9 99796576 99796594 GGAACAAGGACGTGAAGGA 60 99796616 99796726 ATTTCTCACAAGGTTGTGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Mt1 ENSRNOG00000025764 ENSRNOT00000038212 3 1 1 81 19 11302283 11302301 GCAAGAAGCAGGTCTTCTG 59 11302219 11302243 GGAAAGAAAGAAGAGGAAGATGTC 60 NA Rattus norvegicus 81 Mir3591 ENSRNOG00000035602 ENSRNOT00000053725 1 1 1 60 18 60755337 60755357 CTGTTTAGTGTGATGATGGCG 60 60755297 60755315 TCTGGAGTGTGACAATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126,ENSRNOT00000080818 3 3 3 83 3 121828068 121828092 GTGACTCTCAAAGTCTCAAATACTC 60 121826009 121828027 TTCCGGAATCTCCTTCAGC 60 NA Rattus norvegicus 81 Ift81 ENSRNOG00000001294 ENSRNOT00000066952 1 1 1 80 12 39442893 39442912 CTGTGAAGACAAACCAGACC 59 39442949 39461906 GTTTACTGACGTATCTCTTGAACTC 60 NA Rattus norvegicus 81 Slc35a2 ENSRNOG00000024801 ENSRNOT00000063952 2 1 1 81 X 15457598 15457621 TCTATACCTTGCAGAATAACCTCC 60 15455487 15457559 TTCAGCTGATACGTCACCTG 60 NA Rattus norvegicus 81 LOC290595 ENSRNOG00000043342 ENSRNOT00000065460 3 1 1 81 16 14358103 14360493 CTCAGAAGGGAGAAAGCGT 59 14358040 14358061 GGTTATGGGTTTGGATCTAGGA 59 NA Rattus norvegicus 81 Zfp54 ENSRNOG00000051578 ENSRNOT00000077642 3 1 1 81 1 61321751 61324542 GGTCTCTGTTGAGAACTACTG 58 61324583 61324603 CTCATTACACTGACAGGACTC 58 NA Rattus norvegicus 81 Pon3 ENSRNOG00000009096 ENSRNOT00000012050 2 1 1 80 4 30321350 30321368 GTTTGAAGAACAACCGCGT 60 30317999 30321308 ACCACAATGTCATTCACACTC 59 NA Rattus norvegicus 81 AABR07010170.1 ENSRNOG00000061390 ENSRNOT00000092191 2 1 1 169 2 127777834 127777852 TGAAGTCAAGAGCAAAGCC 58 127770907 127770925 CATGAATGCAGCAGTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Atxn7l3 ENSRNOG00000020930 ENSRNOT00000028407 1 1 1 80 10 90239362 90239381 CTGAGAGTGACCAAGAAGAC 58 90239127 90239322 TTCTCTTCTTGGCTTTCTTCTC 58 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841,ENSRNOT00000030327 1 2 2 81 1 28544118 28551388 GAGTTAGTTCAGCTAGAAGAGG 58 28551428 28551448 GTTTGATCTCAACCAGATGTC 57 NA Rattus norvegicus 81 Lrrc8b ENSRNOG00000002129 ENSRNOT00000002897 3 1 1 80 14 5423403 5423422 ATCTGACCTTCATTCCCGAG 59 5419203 5423363 GCATCTCGATGTTATTGTTGGT 60 NA Rattus norvegicus 81 Sp4 ENSRNOG00000005472 ENSRNOT00000007625 1 1 1 96 6 146152964 146193121 TCACTAGTGTTGCAGGTCAG 60 146152887 146152905 TTAGCGATCCCTCCAACTG 59 NA Rattus norvegicus 81 Ubash3b ENSRNOG00000008187 ENSRNOT00000010873 1 1 1 80 8 45259887 45262881 CCAGTTCTTCATGTGCGAG 59 45259825 45259844 TTACACCTCCATCGACTGAC 59 NA Rattus norvegicus 81 Ubash3b ENSRNOG00000008187 ENSRNOT00000010873 3 1 1 80 8 45259884 45262878 GTTCTTCATGTGCGAGGAC 59 45259822 45259842 AACTTACACCTCCATCGACTG 60 NA Rattus norvegicus 81 Mtpn ENSRNOG00000011857 ENSRNOT00000015808 1 1 1 80 4 63039281 63039299 GCGACAAGGAGTTCATGTG 59 63023226 63039238 TGACATCTTCTCCCTTAGCC 59 NA Rattus norvegicus 81 Tesk2 ENSRNOG00000017282 ENSRNOT00000023416 1 1 1 80 5 135657335 135657787 CCTTCAACTGCTGTAATATGGAC 60 135657824 135657845 GGCTCATAATTTCCTCTAGGGT 60 NA Rattus norvegicus 81 LOC100365321 ENSRNOG00000027055 ENSRNOT00000034929 3 1 1 98 4 59365485 59365505 AAATGAGACGACCAAACACTG 59 59365565 59371148 TCCAGAACTGGAACTCAGC 59 NA Rattus norvegicus 81 Papd4 ENSRNOG00000012099 ENSRNOT00000016135 2 1 1 80 2 22782183 22782279 CTTCCCACAAAGCAGACTC 59 22782121 22782139 AAGCATAAATCGCCATCGC 60 NA Rattus norvegicus 81 Olr1349 ENSRNOG00000016546 ENSRNOT00000022152 3 1 1 60 9 99745811 99745829 TGCTCTTTGCTGTCTTCCT 59 99745852 99745871 ATCATAGTGAGGTTGCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1542 ENSRNOG00000046780 ENSRNOT00000060891 1 1 1 60 11 43358165 43358184 TCACTGCGATCTATCTGGTC 59 43358124 43358142 ATGTAGATCAAGGCCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tubgcp5 ENSRNOG00000011480 ENSRNOT00000055989 1 1 1 80 1 114212962 114212982 AGGTGTTCCTTCTTCTACTGC 60 114213024 114214090 CAGCATTAGCCAGTTCACC 59 NA Rattus norvegicus 81 Tmed2 ENSRNOG00000001053 ENSRNOT00000001397 1 1 1 80 12 37474880 37474898 CATGACAGCCGTAAAGCAC 60 37472666 37474839 CTGTTTGTGTTGTCATTGATGG 59 NA Rattus norvegicus 81 Vom2r33 ENSRNOG00000047703 ENSRNOT00000073461 3 1 1 80 1 65951879 65951898 TGTGTCCACAGTACTCGAG 59 65951942 65951960 CCAATGGTTCCTCAAAGGC 59 NA Rattus norvegicus 81 Recql4 ENSRNOG00000032446 ENSRNOT00000045135 3 1 1 80 7 117770933 117770951 CATCCCATTTCCACGTTGG 59 117770768 117770890 AGGTTCAGTTTCCTCACCAG 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000064022 2 1 2 83 1 280383892 280396916 AACCTGACAGGTTATGGCC 60 280396963 280396981 AGGGATTCCAAAGAGTGCA 59 NA Rattus norvegicus 81 Cd27 ENSRNOG00000027466 ENSRNOT00000038023 1 1 1 80 4 157746027 157746046 CATGCTTCTTGTCTTCGTCC 59 157745745 157745985 GCCTGGCTATCTTCATTTGG 59 NA Rattus norvegicus 81 Lamc2 ENSRNOG00000002667 ENSRNOT00000036947 2 1 1 80 13 70574819 70575327 AGGACAGAAGACAGACTTCG 59 70574758 70574777 CCATACTTAGCGCTTCTTGG 59 NA Rattus norvegicus 81 AABR07065750.1 ENSRNOG00000045984 ENSRNOT00000072365 2 1 1 106 6 140215935 140216038 CATTTCCAAGCTGTGTCCTG 60 140215848 140215866 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Mogs ENSRNOG00000008648 ENSRNOT00000011521 1 1 1 80 4 113949661 113949825 GCATGGCAGCTACAATGTC 60 113949867 113949887 CTGTTTAGGTGGCTCTTTACC 59 NA Rattus norvegicus 81 Ppp1r1a ENSRNOG00000036827 ENSRNOT00000055271 1 1 1 91 7 145149452 145149843 CTTCTCAAGTCCACACTGTC 58 145148828 145148846 TCAACCATTGTCTGGAGCT 59 NA Rattus norvegicus 81 Rdh10 ENSRNOG00000006681 ENSRNOT00000009096 1 1 1 80 5 2608721 2608741 AATCATGGCCATATTGTGACG 59 2607770 2608681 CTTACTGGCACAGTAATCCTC 58 NA Rattus norvegicus 81 Gipc2 ENSRNOG00000042152 ENSRNOT00000065811 1 1 1 80 2 257308279 257336687 CCAAGAAGGCATTTGAAATAGG 58 257308220 257308239 GAGTCCCTCTTGAAGTACCA 59 NA Rattus norvegicus 81 Mbd3l2 ENSRNOG00000026629 ENSRNOT00000029911 1 1 1 88 8 17928394 17929082 CCTTTGCTAGGAAGACTCAC 58 17929133 17929151 GTCTTTGTCTTGCTCTGGG 59 NA Rattus norvegicus 81 RGD1562024 ENSRNOG00000042749 ENSRNOT00000065217 2 1 1 163 17 8616884 8617474 AGAGATGGATGCCTTTCCC 59 8616739 8616757 TAGTATGGCACGAATCCCG 59 NA Rattus norvegicus 81 Slc25a35 ENSRNOG00000004668 ENSRNOT00000006597 3 1 1 96 10 55555851 55557292 CCAATCTACATGGTGAAGACAC 59 55557763 55557781 TTAGTGCCTGAAACATGCC 59 NA Rattus norvegicus 81 Ndufb5 ENSRNOG00000011949 ENSRNOT00000016051 1 1 1 80 2 119150711 119153224 CCGACTTACGGTTAAAGGAG 58 119153264 119153285 GGGTTGGATATTGATACCAAGG 59 NA Rattus norvegicus 81 Fam83b ENSRNOG00000011925 ENSRNOT00000015947 2 1 1 81 8 83618677 83625904 GTTCTTACAGTTACATGTGGTC 57 83618617 83618638 AATAACTCTACAAGGTGTCCTG 58 NA Rattus norvegicus 81 Nfu1 ENSRNOG00000018410 ENSRNOT00000024884 3 1 1 81 4 118820132 118820150 CTTGAGACGAGGACCATGG 60 118820191 118823691 CTTCAATCCTGAATAACTGCCTG 60 NA Rattus norvegicus 81 RGD1565641 ENSRNOG00000038902 ENSRNOT00000059467 1 1 1 65 2 88350119 88350669 GAAAGAGCTGAAGCACCAC 59 88350698 88350716 TGAGCCATTAGTCGTGTCG 60 NA DesignRelaxed Rattus norvegicus 81 Trmt6 ENSRNOG00000021270 ENSRNOT00000028893 2 1 1 80 3 125465562 125465583 GGAAAGTCCCAGAAACTTACTC 59 125465032 125465524 CTGCTGAACTATTTCCTCTCCT 60 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 3 2 3 80 4 164300938 164300957 GCATGGATGTAAACAGACCT 58 164295240 164300898 TGTAGGAACTTCAGTTCATCCT 59 NA Rattus norvegicus 81 Nrip1 ENSRNOG00000001585 ENSRNOT00000002152 3 1 1 94 11 14700937 14700955 GACTCCGGTGACATCAGAG 60 14665752 14700882 ACAGAACAGTATCGTCTGTCTC 60 NA InUTR Rattus norvegicus 81 Rpl37 ENSRNOG00000033803 ENSRNOT00000045156 3 1 1 60 9 69791059 69791079 GCACCTAAAGATTGTCTACCG 59 69791099 69791119 TTTAGGTGTTGTTCCTTCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mab21l1 ENSRNOG00000032941 ENSRNOT00000040631 2 1 1 60 2 145176163 145176181 AGACTCTGGTGTCCTACGA 59 145176204 145176223 CAAGATTCATCCCAGTCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npsr1 ENSRNOG00000015863 ENSRNOT00000021625 2 1 1 80 8 25419357 25448411 CGCTACTTACAGGTTGTCC 58 25448455 25448473 AACGATGGCATGGTATCTG 58 NA Rattus norvegicus 81 Hmgxb4 ENSRNOG00000013878 ENSRNOT00000067519 3 1 1 80 19 14358031 14358053 GATTTCTTAAGGGAAGAGGAGGA 59 14358090 14358211 GAACAGATCACTGTCCTTTGAC 59 NA Rattus norvegicus 81 St3gal3 ENSRNOG00000019843 ENSRNOT00000056842 2 1 1 80 5 136940301 136940319 ACTCCAATGGGAAGACTCC 59 136862253 136883610 AGCCTATCATACTCTGTGCC 59 NA Rattus norvegicus 81 RGD1306151 ENSRNOG00000008443 ENSRNOT00000068663 3 1 1 80 4 169005918 169007051 GTTTACAGTGATGGAGTTGAGC 60 169007091 169007110 TCTGGTTGTAATCAGGAGGC 60 NA Rattus norvegicus 81 Rec114 ENSRNOG00000009332 ENSRNOT00000012381 2 1 1 80 8 63459315 63507513 CAGACACTACTGGAAGGGT 58 63459253 63459272 GAACAGAAGACAGTCCATGC 59 NA Rattus norvegicus 81 Tub ENSRNOG00000046566 ENSRNOT00000074636 1 1 1 80 1 173624460 173624684 CCCGAAATGAACACGAGAC 59 173624728 173624746 GCGTCTTATTCTGCAGCTC 59 NA Rattus norvegicus 81 A1cf ENSRNOG00000033195 ENSRNOT00000067643 1 1 1 80 1 250481605 250481626 TTGCCTTTGTGGAATATGAGAG 59 250481665 250484184 CCCACAACTGAATTCTTCCTG 59 NA Rattus norvegicus 81 Mroh6 ENSRNOG00000032231 ENSRNOT00000048363 3 1 1 80 7 116916817 116917063 CTGCTGAGAGCTCAGAGTG 60 116916755 116916774 CCACAGTAACCATCTCCTCC 60 NA Rattus norvegicus 81 Mrgprh ENSRNOG00000014965 ENSRNOT00000020070 3 1 1 60 1 48069584 48069605 TTTCCTGTACCTTGACTTTCCT 59 48069545 48069566 AGTATCAAGTTCGAGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561849 ENSRNOG00000021663 ENSRNOT00000039237 3 1 1 120 5 9360838 9364073 AAGTCATTGATTCCTCCAGTG 58 9357925 9357943 TCTTCTTGAGGTGTCTGGA 58 NA Rattus norvegicus 81 Tecta ENSRNOG00000031126 ENSRNOT00000052293 2 1 1 80 8 46606695 46610933 CATCGAAGGAGGGTGTCAG 60 46606633 46606651 TGGAAACGACAGGTTAGGG 59 NA Rattus norvegicus 81 AABR07065645.2 ENSRNOG00000047785 ENSRNOT00000070980 3 1 1 119 6 138565055 138565073 AATCCCGACTGAGCATCAG 60 138564860 138564976 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000031024 ENSRNOT00000042759 2 1 1 90 2 76923930 76926012 GAGTTGTCAGTATTTGTAGCAG 57 76926063 76926081 GAGTAACTGATCCTCCAGC 57 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000031024 ENSRNOT00000042759 3 1 1 91 2 76923928 76926010 CTGAGTTGTCAGTATTTGTAGC 57 76926062 76926080 AGTAACTGATCCTCCAGCA 58 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 3 2 2 80 2 205641888 205644651 CCTTAGAACTCAAGAGTGAAACG 60 205644689 205644709 GCTTCTTACAGTAGCCAAACC 59 NA Rattus norvegicus 81 LOC498705 ENSRNOG00000033993 ENSRNOT00000044670 3 1 1 91 17 9972917 9975345 CAGTGAAGAGGGAGAACTCC 60 9975399 9975417 TAAGTTCACAGCCCTGCTC 60 NA Rattus norvegicus 81 Krtap3-3 ENSRNOG00000045678 ENSRNOT00000039983 1 1 1 193 10 87468578 87468596 CCTCTGACAAGTCCTGTCG 60 87468403 87468421 ATAGGTGGTGAGGTTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pum1 ENSRNOG00000011709 ENSRNOT00000015831 1 1 1 80 5 148868291 148868309 TTGCTGTTCAGCAGTTGAC 59 148868353 148870699 GAGCTAAACCGATGTGAGG 58 NA Rattus norvegicus 81 Tkfc ENSRNOG00000020704 ENSRNOT00000028102 3 1 1 80 1 226646779 226647161 GCTGAAGCTGATAGATGCTG 59 226646718 226646737 ATCCGATTCCTTCCAGTCAC 60 NA Rattus norvegicus 81 Slc25a27 ENSRNOG00000010592 ENSRNOT00000052068 3 1 1 80 9 19883885 19883903 GGATTGTCCAGGAGGAAGG 60 19883945 19886386 CTCCAGAGTACACTACGTGTC 60 NA Rattus norvegicus 81 Crygc ENSRNOG00000014950 ENSRNOT00000020078 1 1 1 80 9 71787959 71787977 CTACCCTGACTACCAGCAG 59 71786573 71787915 CTGTGGGAACCTGTATGGG 60 NA Rattus norvegicus 81 Ap4b1 ENSRNOG00000019455 ENSRNOT00000026382 3 1 1 80 2 206296995 206297368 AGACTCTGAAGTAGATGGTGC 59 206297408 206297428 CAGTTCACAACCACAATTGGA 59 NA Rattus norvegicus 81 Mia2 ENSRNOG00000038832 ENSRNOT00000059335 2 1 1 81 6 80189047 80193698 GGAATGTGAAACTTTGATCACC 58 80193739 80193758 CGTAGTGAAGTTCAGGTACC 58 NA Rattus norvegicus 81 LOC100362040 ENSRNOG00000030738 ENSRNOT00000042161 2 1 1 80 9 100677435 100677456 AATCAGAACCCTTTAACACTGC 59 100675224 100677394 GAAATTGACCTGCCCAGTC 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000086950,ENSRNOT00000077082 1 2 3 81 20 5081834 5081854 CTCAGTCTTCTGGTCCATCTC 60 5081893 5082360 GGACAAACTCAAGTAACCTTTCC 60 NA Rattus norvegicus 81 Ppp2r3b ENSRNOG00000049270 ENSRNOT00000071648 3 1 1 83 14 1472588 1472775 ATTATGTCACCACGGTGAC 58 1472821 1472840 GTCTAATCTCCTGGCAAGAG 58 NA Rattus norvegicus 81 Alox12e ENSRNOG00000019074 ENSRNOT00000025910 1 1 1 80 10 56930382 56931790 GCATCCCATATACAAGCTCCT 60 56930322 56930342 GAGACAAGATTATTCCGTGCC 59 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 1 2 2 82 4 33929643 33929661 CATTCAGACGACAGTGGAC 58 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 Rbm24 ENSRNOG00000046547 ENSRNOT00000072682 1 1 1 80 17 18681391 18681411 GCCTGTAAGGATCCTAACCC 60 18681328 18681346 GATTCTTGGTTTGGCTCCC 59 NA Rattus norvegicus 81 Arfip2 ENSRNOG00000018440 ENSRNOT00000025159 1 1 1 80 1 170468795 170468987 GCATCAACACATATAAGTGCAC 59 170468736 170468755 CTAGCTCCAGATCCACAGTC 59 NA Rattus norvegicus 81 Sox11 ENSRNOG00000030034 ENSRNOT00000045963 1 1 1 60 6 46631388 46631406 AGAAGATCCCGTTCATCCG 59 46631346 46631364 GGATAATCAGCCATGTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox11 ENSRNOG00000030034 ENSRNOT00000045963 2 1 1 61 6 46631388 46631406 AGAAGATCCCGTTCATCCG 59 46631345 46631363 GGGATAATCAGCCATGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkl1 ENSRNOG00000038720 ENSRNOT00000006374 3 1 1 81 6 92088342 92091149 CCATAAACACAACTGCATACAC 58 92088282 92088303 GTCACAGAGCTTAATGACTGAG 59 NA Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695 1 1 2 110 9 100833055 100833073 GTATATCGGAATGTGGCCC 58 100833147 100838970 CCATGTGATACCTGCTGAG 58 NA Rattus norvegicus 81 Olr1370 ENSRNOG00000046347 ENSRNOT00000073401 2 1 1 60 10 12521937 12521957 ATTTCCTTCTCTGGGTGTCTC 60 12521897 12521917 TGTCCATATCAGCAAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atrn ENSRNOG00000021240 ENSRNOT00000028847 2 1 1 80 3 123505826 123505844 GCCAATACCAATGACTGCC 59 123505887 123506895 AATGGAGATCTGGCCTTCTG 60 NA Rattus norvegicus 81 Sost ENSRNOG00000020805 ENSRNOT00000028238 3 1 1 88 10 89899939 89899960 GAACTAGAGAACAACCAGACCA 60 89897496 89899890 TACTCGGACACGTCTTTGG 60 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 1 1 2 92 4 39519676 39519695 GACAGGAAGAATCCCTAGGG 59 39522599 39526701 TACAGCTTTGTTCTTCTTGGTC 59 NA Rattus norvegicus 81 Ccdc22 ENSRNOG00000010846 ENSRNOT00000015546 1 1 1 80 X 15753738 15753835 TCTGCATGAGAATTGCAGC 59 15753877 15753897 TCCTCAAGATCTCGAACTTCC 59 NA Rattus norvegicus 81 Tmem254 ENSRNOG00000011276 ENSRNOT00000015011 2 1 1 81 16 3817686 3819587 TTCAGCTACTACACGTGGG 59 3819632 3819650 ACTTTGTGAAGGGACCCAG 60 NA Rattus norvegicus 81 LOC100364523 ENSRNOG00000056519 ENSRNOT00000084780 1 1 1 80 17 4048865 4048886 CATAACAGGGAGAATTCCTTGG 59 4048717 4048828 GAATTCTTCATCAGTCAGGTCAG 59 NA Rattus norvegicus 81 Hmgcl ENSRNOG00000009422 ENSRNOT00000012853 3 1 1 80 5 154301218 154303069 CTTTGAGGAAGCGGTAGCT 60 154303112 154303131 ACATTCTTCCGGGTGAAGAG 60 NA Rattus norvegicus 81 Sec23ip ENSRNOG00000020411 ENSRNOT00000027665 2 1 1 80 1 200176104 200177300 AGATCTATAATTCAGTGCAGCC 58 200177338 200177359 CATAAAGGTACACATCATAGCG 57 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 1 2 2 80 11 15461195 15461214 CTATTACCAGACAGCAGCAC 59 15461254 15472559 AGATCAATCACATTCGCATCTG 59 NA Rattus norvegicus 81 Adam4 ENSRNOG00000038275 ENSRNOT00000008367 2 1 1 60 6 105159012 105159031 AATCTTGTAGGTTTGCACCC 59 105158971 105158990 AGATCACAAATGCCATTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdilt ENSRNOG00000015368 ENSRNOT00000020817 2 1 1 80 1 189221265 189221283 TGTTCAACAACAGCAACGA 59 189220129 189221223 CCTCTAAATCCTGGAAGAAGC 58 NA Rattus norvegicus 81 Plcd3 ENSRNOG00000003033 ENSRNOT00000004140 1 1 1 80 10 91171423 91171441 AACATCCTGGGAGACATGC 60 91169484 91171379 TTTGAGCTGCTCAGGAGAC 60 NA Rattus norvegicus 81 Arfgef1 ENSRNOG00000005703 ENSRNOT00000007766 2 1 1 80 5 8743879 8744423 AGACAGAGAAAGCTGAATGGA 59 8744462 8744483 CTAAATACTGGGTGAACACGTC 59 NA Rattus norvegicus 81 Bop1 ENSRNOG00000021773 ENSRNOT00000025134 3 1 1 80 7 117515437 117515455 CAGGAGCTTACGAAGAAGC 58 117515287 117515393 GATGATGTTGTCACCTGCT 58 NA Rattus norvegicus 81 AABR07065886.2 ENSRNOG00000046401 ENSRNOT00000051410 3 1 1 84 6 143701895 143701997 ATAACTGCTGGTGTCCACTC 60 143701830 143701850 AGGACATCTTTACTGAAGCCC 60 NA Rattus norvegicus 81 Tmprss15 ENSRNOG00000001916 ENSRNOT00000051213 2 1 1 80 11 17562550 17566893 CTTGTCAGGGTGATTCTGG 58 17562488 17562507 CTCCAAATGATGTCACACCA 58 NA Rattus norvegicus 81 Ccdc38 ENSRNOG00000021892 ENSRNOT00000030985 1 1 1 80 7 34464242 34467544 GAGTTTGATCTGATGCCAGAG 59 34467586 34467604 ATTCTGCTCTTCCAGCTCC 60 NA Rattus norvegicus 81 Eme2 ENSRNOG00000024867 ENSRNOT00000030458 3 1 1 85 10 14256053 14256072 AAATGAGCAGGAACAGTTGC 60 14255364 14256005 AAGGTGGGTCTGTCATCTG 59 NA Rattus norvegicus 81 Olr1398 ENSRNOG00000045940 ENSRNOT00000041540 3 1 1 60 10 34744685 34744705 TGTAGCACTAATTCTAGGCAC 58 34744727 34744745 TGACTTGATCTTCAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacrgl ENSRNOG00000004140 ENSRNOT00000005587 1 1 1 80 14 66763533 66765688 ATTACATTAGCCGAGGGTCTG 60 66763473 66763494 CAGAAGTAACTCCCTAAAGCCT 60 NA Rattus norvegicus 81 Maf1 ENSRNOG00000013514 ENSRNOT00000018240 2 1 1 80 7 117419597 117419701 GAATGTGACATCTACAGCTATAACC 60 117419737 117419757 GTAGTTGAATGACCAGAGGCT 60 NA Rattus norvegicus 81 Soat1 ENSRNOG00000004111 ENSRNOT00000005677 1 1 1 80 13 74043132 74044037 ATACTTGAGCAGATTCGTTTGG 59 74043073 74043092 CTTGGCTGCACTTAGAACTC 59 NA Rattus norvegicus 81 Lrrc34 ENSRNOG00000027935 ENSRNOT00000031730 2 1 1 80 2 116384732 116387357 GTACGGAGAACAGGAAGAG 57 116387399 116387419 CACATATGCAGTTCAACAAGG 58 NA Rattus norvegicus 81 Olr59 ENSRNOG00000018606 ENSRNOT00000025097 3 1 1 85 1 167908344 167911400 ACAATTTCCAGGCTGTTCC 58 167908277 167908295 GTGAGTGAAGTTGCAGGAG 59 NA InUTR Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000082383,ENSRNOT00000012880 3 2 2 135 X 15613393 15613770 TGATAATGAAGAGCCTCATAGC 58 15613866 15613884 AATATCTGATGGCGGAGGT 58 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 1 1 1 96 5 38922698 38922739 AATTTGGGCAGGTTCAGTC 58 38922620 38922638 TTCAATCAGAGCCACTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Rapgef5 ENSRNOG00000005271 ENSRNOT00000007112 2 1 1 80 6 145546908 145546926 AGAAGATCTTGGAGCACCT 58 145546968 145572339 AGTCATCAAGGAGTGTTTCTG 58 NA Rattus norvegicus 81 Wdr45 ENSRNOG00000009749 ENSRNOT00000013369 3 1 1 80 X 15625164 15625283 TCAACCAAGACCAAAGCTG 58 15625102 15625121 CTTTCTCCATCAGTGGTTCC 58 NA Rattus norvegicus 81 Ncapg ENSRNOG00000038572 ENSRNOT00000058838 2 1 1 80 14 69907255 69907274 AAGAAGATGCTGAAGACAGG 58 69905821 69907212 GTTCAGATACCTCGCTGTC 58 NA Rattus norvegicus 81 Trmt12 ENSRNOG00000008978 ENSRNOT00000011876 1 1 1 60 7 98748677 98748697 GGTTTACCCAGAGATACAGAG 57 98748718 98748737 CGGTACTGTCTATCCAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Triml2 ENSRNOG00000028299 ENSRNOT00000033652 3 1 1 80 16 52123071 52123091 CTCCAGAAGATCATCACAGAC 58 52119901 52123032 TAAATAGCACTCTGCATTCTGG 59 NA Rattus norvegicus 81 Smg7 ENSRNOG00000027962 ENSRNOT00000044235 1 1 1 80 13 70284004 70284022 CCATAGTGAAGCCACAGTC 58 70282773 70283960 TGTATCGAGCAATGTCTCC 57 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000084553 1 2 3 80 12 37408214 37408233 TTTGTTTGGAGAAGATGCCT 58 37405548 37408171 ACATTCTCCCTGAGTTGTG 57 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000085270,ENSRNOT00000078412 2 2 4 115 20 12858049 12858067 TTCATTTGCTGTCCAAGCC 59 12856518 12857384 GATTGTTGTCTGGGACCTG 58 NA Rattus norvegicus 81 Mr1 ENSRNOG00000003522 ENSRNOT00000004694 3 1 1 86 13 72775691 72779720 CCCTAGAAAGAACAGAACATCC 59 72775626 72775644 CATGAGCTCTGCAGAAGAG 58 NA Rattus norvegicus 81 Slc29a1 ENSRNOG00000019752 ENSRNOT00000026831 3 1 1 80 9 17793346 17793366 GTCTGGCTCATCTTCTTTGTC 59 17793407 17793538 TGTGAAATACTGGGTTGCTG 59 NA Rattus norvegicus 81 Jph1 ENSRNOG00000006110 ENSRNOT00000008153,ENSRNOT00000085564 3 2 2 91 5 1500124 1500143 GCAAAGAAGTCTGAACTTGC 58 1500197 1506534 GAATTAGGGCCGGAATTGG 59 NA Rattus norvegicus 81 Bhmt ENSRNOG00000011200 ENSRNOT00000015336 3 1 1 96 2 23240841 23240859 CTTACTTGATGAGCCAGCC 58 23239705 23240781 CTGGGTTCCAATCCAAAGG 58 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388,ENSRNOT00000088223,ENSRNOT00000074793 3 3 3 81 7 135560602 135560623 AACAGAGTCAGAATGTTCTGGA 60 135559393 135560562 CCACAAATGTCTTCCCTAGTG 59 NA Rattus norvegicus 81 Acvr2b ENSRNOG00000014477 ENSRNOT00000019777 2 1 1 82 8 128112982 128113306 CAATTGCTACGACAGGCAG 59 128113351 128113370 TGCAGAAATTGCCTTCACAG 60 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000087090 3 1 2 89 6 105395474 105395493 GTGGCCTTCTATCATCTTGG 58 105395545 105397429 TATCCTGACCCTCACTGAG 58 NA Rattus norvegicus 81 Slco6b1 ENSRNOG00000019252 ENSRNOT00000026099 2 1 1 80 9 104427980 104437175 TCGTGCTCTTTGGTATCTG 57 104427918 104427936 ATCAAAGCCAAGGACTCTG 57 NA Rattus norvegicus 81 Best3 ENSRNOG00000005491 ENSRNOT00000007309 1 1 1 80 7 60033739 60033757 AAATCTTGCAACCAAAGCC 57 60033800 60035145 CGATTCATTTCGGTCATCAG 57 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578,ENSRNOT00000026466 3 2 2 88 1 199353298 199353392 GACTTCCCTCCGATCAAGG 60 199353443 199353462 GTTACCACATCCTTGTGGTC 59 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403,ENSRNOT00000070958 2 2 2 96 13 84068323 84068342 GCAGAAAGACAAGATGGCAG 60 84069167 84070250 GCTGAGACCCTGGTAAAGG 60 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218,ENSRNOT00000065373 3 2 2 80 10 91263975 91263995 AGAGCTACTTAGATACCGGTG 59 91264037 91264680 GAACTCGCCTCTTAAACCC 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000087470 2 1 6 97 20 4611864 4613893 TCCACAGACCAGGAAACAG 59 4613953 4613972 CACTGAGGAGACAGAAGACC 60 NA Rattus norvegicus 81 Vamp1 ENSRNOG00000019219 ENSRNOT00000025081 2 1 1 68 4 157730117 157730135 CGATTACAGCAAACCCAGG 59 157730365 157730383 GACCTTGTCCACATTCACG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1564378 ENSRNOG00000029291 ENSRNOT00000040470 2 1 1 60 2 125257530 125257550 GCCATGAAGAAAGTAGAGGAC 59 125257572 125257590 TGTTGACCTTGACATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809,ENSRNOT00000028347 3 2 2 80 1 226853891 226853911 CTGGGAATTCTCCTTCTTGTC 58 226853524 226853850 AGTAGGGAGGGCATATTGTC 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 1 2 2 80 6 91891993 91892014 TAGATGTGGACCTCAATAGCTC 59 91888219 91890318 TGAAGAAAGACTTTGAGTGTGG 59 NA Rattus norvegicus 81 RGD1359508 ENSRNOG00000038330 ENSRNOT00000058366 3 1 1 99 2 128681374 128681392 AGATGGAGGTTAGTGCTCC 59 128681452 128683325 GCTTCCACAACTTCATAATTCC 58 NA Rattus norvegicus 81 Olr1384 ENSRNOG00000047001 ENSRNOT00000071365 1 1 1 60 10 34332450 34332469 CCTTACTCCTATGCTCAACC 58 34332409 34332427 TGCTCCTATCACATCACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 2 2 2 81 12 42486592 42488683 CCTATCAGAATGACAAGATAACCC 59 42486534 42486552 CTGCCATTGCCAGTATCTC 58 NA Rattus norvegicus 81 Apba2 ENSRNOG00000016358 ENSRNOT00000022049 1 1 1 80 1 125540514 125545448 ATGGAATCATTTGCAGCCTC 59 125545490 125545509 TGATCTCGATGATACGGTGG 59 NA Rattus norvegicus 81 Sertad1 ENSRNOG00000024363 ENSRNOT00000028468 2 1 1 97 1 84293204 84295321 AGTGATCTGGAGGATGCTG 59 84295382 84295400 TTTGATCCAACCACCACGA 60 NA InUTR Rattus norvegicus 81 Ier5 ENSRNOG00000059406 ENSRNOT00000077157 3 1 1 259 13 72743969 72743987 CGCCAAGTCTACTTGAGTG 58 72743003 72743021 GATGAGACTCGAGAGCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem107 ENSRNOG00000006519 ENSRNOT00000008787 2 1 1 82 10 55654401 55654501 GACAACCAACTGGTAGCAG 59 55654547 55654565 ATGGAGACTCCTGAGAGGA 59 NA Rattus norvegicus 81 LOC689031 ENSRNOG00000047990 ENSRNOT00000070960 2 1 1 60 2 45620436 45620455 TCAACAGAGAAACAGCAGGA 59 45620475 45620496 ATCGTAATCATCAGTGATCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpn3 ENSRNOG00000001278 ENSRNOT00000001722 1 1 1 80 12 39671870 39671891 GCTAGAAGATTCAACAGGTGAC 59 39671264 39671831 TAGTCATCAACCAGACCACAC 60 NA Rattus norvegicus 81 N6amt1 ENSRNOG00000001603 ENSRNOT00000002182 1 1 1 80 11 27011960 27015008 CTGAAGAGGTAGGAAGCCA 58 27015052 27015070 GGAAGAACCTGTCCATGAC 58 NA Rattus norvegicus 81 N6amt1 ENSRNOG00000001603 ENSRNOT00000002182 2 1 1 101 11 27011960 27015008 CTGAAGAGGTAGGAAGCCA 58 27015073 27015091 AGAGAAGTTGTGAGGCCAG 59 NA Rattus norvegicus 81 LOC100361830 ENSRNOG00000013046 ENSRNOT00000017592 1 1 1 80 9 27129524 27129542 AATGAATCTGGACAGCTGG 58 27123611 27129480 TAAATAGCCTTCCGTTGCC 58 NA Rattus norvegicus 81 Zbtb5 ENSRNOG00000012726 ENSRNOT00000017046 1 1 1 91 5 60558174 60558193 CAAGCTTGGGAAGACAAGAG 59 60543045 60543063 CTGCTCAAAGTGACCAGGA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mis18a ENSRNOG00000021555 ENSRNOT00000037444 1 1 1 80 11 30885720 30885738 AGATGCACTCCCAAGAACC 60 30881511 30885680 CCCTAAGGTATAACTTTCAACGG 59 NA Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 3 2 2 80 8 76545396 76560135 GGATATTGAGGTTCTCCAGG 57 76545335 76545353 TCCAGTGTCTTTAAGGCAG 57 NA Rattus norvegicus 81 Olfml3 ENSRNOG00000019211 ENSRNOT00000026075 3 1 1 83 2 206221243 206221261 ATGAGAAGGTGACTGGAGG 58 206220685 206221197 TGTAGCTACAGTCTGTCACC 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 3 2 2 80 3 35220393 35220411 ATGCACGAAGTCAGTTTCC 59 35220455 35220973 CAGAGCCTTCTTCACTTCC 58 NA Rattus norvegicus 81 Eps8 ENSRNOG00000007047 ENSRNOT00000009328 3 1 1 80 4 171536584 171538213 CCTTCTCAAATGAATGGTTACG 58 171536525 171536543 CTTTGCACTTGTCCTGGAG 59 NA Rattus norvegicus 81 Ankub1 ENSRNOG00000043466 ENSRNOT00000057909 3 1 1 90 2 147805172 147805190 GAGTGTCTACTGTCTCCGG 59 147800257 147805118 AAGTGTTGTGCCGATATCC 58 NA Rattus norvegicus 81 RGD1563157 ENSRNOG00000032523 ENSRNOT00000041376 3 1 1 60 6 42947379 42947398 GAGCTGTTGAAACAACTGGA 59 42947421 42947439 CTTTGGCTATGCGAAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adcy10 ENSRNOG00000053410 ENSRNOT00000082677 1 1 1 80 13 83778360 83778379 CGGAATCCCAACAAATACCA 58 83778420 83779303 GACCAAATGCTTGTATCTGCT 59 NA Rattus norvegicus 81 Polr3h ENSRNOG00000004471 ENSRNOT00000005943 2 1 1 80 7 123153280 123153300 CTGTTTGATATCACCAAGCTG 57 123148968 123153239 GTATCGGAAATGCACTTTGG 58 NA Rattus norvegicus 81 Rimklb ENSRNOG00000023814 ENSRNOT00000032690 3 1 1 81 4 155260558 155262635 AACTGTTCCCTAGGTGGTG 59 155260495 155260517 GGATATTAGACACCTGGATAGCT 59 NA Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 2 1 1 61 1 31531971 31531990 CTCACTGAGCTAAGTGTAGC 58 31532014 31533629 GGGCTAAGCAATGTTTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Lsm14a ENSRNOG00000021133 ENSRNOT00000078585 1 1 1 80 1 90231376 90231397 TAAAGACCTCACTGTTTGTGAG 58 90227602 90231339 CCTAGTGAAGACTGAACAATAGC 59 NA Rattus norvegicus 81 LOC681990 ENSRNOG00000047498 ENSRNOT00000051451 2 1 1 60 1 60634244 60634265 TTCTATTGCTACTGTCTGTCTC 58 60634205 60634223 GTTTCTGGGACTGATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl39 ENSRNOG00000047563 ENSRNOT00000074032 2 1 1 80 11 24197212 24199163 TGCCATGCATTTGAGTGAG 59 24197150 24197170 GGTTTATACATGTCCCATGGC 59 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000064068 2 1 2 91 13 70175093 70175111 AGAACAAGTTCGTGGACGA 59 70175166 70177309 CATGTTTCCTTGCCGTAGG 59 NA Rattus norvegicus 81 Casp7 ENSRNOG00000056216 ENSRNOT00000080511 1 1 1 80 1 277233387 277233407 TATGGACTTCGAGAAGATGGG 59 277233449 277233911 TTCCGGACATCCATACCTG 59 NA Rattus norvegicus 81 Krt222 ENSRNOG00000010839 ENSRNOT00000014414 2 1 1 80 10 87147701 87147719 TCAACACGAAGATGAGGCT 59 87145756 87147661 AACCGTAATACCTGATCTCTTCC 60 NA Rattus norvegicus 81 Plag1 ENSRNOG00000008846 ENSRNOT00000011721 3 1 1 90 5 16794220 16794753 AATTACAAAGGCACATGGCT 59 16794149 16794167 TTCAGATGGTCTTTCCGGT 59 NA Rattus norvegicus 81 G6pdx ENSRNOG00000056728 ENSRNOT00000080887 2 1 1 80 X 156292639 156292764 CAGATACAAGAATGTGAAGCTCC 60 156292804 156292822 ACAAAGTGCATTTGGCTCC 59 NA Rattus norvegicus 81 Adgrf2 ENSRNOG00000025603 ENSRNOT00000033075 3 1 1 80 9 20927858 20939219 CACTACAGGGCTTCTTTATCC 58 20943416 20943437 ATGTTACTCGACTCTTTAAGGC 58 NA Rattus norvegicus 81 Sval2 ENSRNOG00000025541 ENSRNOT00000021986 3 1 1 80 4 71340761 71342172 GACATTTGGAGCAATCCAC 57 71342213 71342234 CTGGAGTGTTACTGTAAATTCG 57 NA Rattus norvegicus 81 Uba3 ENSRNOG00000006221 ENSRNOT00000008893 2 1 1 80 4 129565896 129567403 CGAGCACTGAATCACTCCA 60 129565834 129565853 GTAGCTCACATCCTAAGCCA 59 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000021688 ENSRNOT00000029783 3 1 1 60 7 36826452 36826471 ATACAGCATGTTTGCTTTGG 57 36826492 36826512 CCTCATTATTCTCCAGTAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr1h5 ENSRNOG00000023073 ENSRNOT00000036229 3 1 1 80 2 205441010 205441030 CGCCTTCTGAATACCATAGTG 59 205440810 205440968 ATACTCCTGCAGAAGTGCA 59 NA Rattus norvegicus 81 Mterfd2 ENSRNOG00000037376 ENSRNOT00000056558 3 1 1 83 9 100443968 100443986 CCCAGTTGCTGAAACTGTC 59 100442211 100443922 TCAGTTTCCCTTCTCCAAGG 59 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 2 2 2 87 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371887 67372036 CCAGCTTCACCTTATGGGT 59 NA Rattus norvegicus 81 Zfyve28 ENSRNOG00000014874 ENSRNOT00000020154 1 1 1 80 14 81807197 81808353 AGAAGCTAAAGAAGGTAACCC 57 81808395 81808413 AGGATGACACAGTTTCCTG 57 NA Rattus norvegicus 81 Taf6l ENSRNOG00000019419 ENSRNOT00000026284 1 1 1 80 1 224975176 224975194 GTGCTGGATGACTATTCCG 58 224975028 224975133 TACGGCTACCAGAATAGCTC 59 NA Rattus norvegicus 81 Pttg1 ENSRNOG00000003802 ENSRNOT00000005070 1 1 1 80 10 29025438 29025459 TGATAAGGATAACGAAGAGCCA 59 29024553 29025399 TCTAAGGCTTTGACACCAGAG 60 NA Rattus norvegicus 81 Ly75 ENSRNOG00000007012 ENSRNOT00000010683 3 1 1 80 3 46404241 46404861 TGGTATAATCCAGAGCGCA 59 46404179 46404197 GGGATCAGCAACAAACCAG 59 NA Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 2 2 2 101 19 16419472 16419492 GGAGGAGAACATTGATCTGGA 59 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Olr879 ENSRNOG00000043438 ENSRNOT00000064380 3 1 1 60 7 3706546 3706564 AACCATCCTCAGATTCCCA 58 3706504 3706525 AGAAGAACAAGTAGAGAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk25 ENSRNOG00000018181 ENSRNOT00000024487 1 1 1 80 9 100770046 100770065 CTGAGCCTATCAAGAGACAG 57 100769085 100770003 GCTTCTCTTTGAGCTCTCC 58 NA Rattus norvegicus 81 Exosc6 ENSRNOG00000018582 ENSRNOT00000025179 3 1 1 122 19 43191777 43191795 CTACCCTCGTGCTCAACTC 60 43191673 43191692 AGATCGTACATCTCCACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r1b ENSRNOG00000010922 ENSRNOT00000064290 3 1 1 80 8 55298080 55298481 ATTCTAGACACCAACGCCT 59 55298522 55298543 TTTGACATCCATGTCTTCATCC 59 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623,ENSRNOT00000078559 2 2 2 80 19 60332717 60341867 AAAGAAACGAAAGCCGAAGAC 60 60341907 60341927 CAGTGGAACTTCGAAAGTCAG 59 NA Rattus norvegicus 81 Tmem26 ENSRNOG00000027859 ENSRNOT00000038095 2 1 1 80 20 21663156 21667173 TATTCTTGAACTGGCCAGAG 57 21663095 21663113 GTTTGGTGGAGTCCTAACG 58 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 2 2 2 88 5 136704958 136705433 CAGACACCTGAGAAGCCTC 60 136704556 136704575 TCTGCTCCATTTCCAGACAG 60 NA Rattus norvegicus 81 Prkab1 ENSRNOG00000001142 ENSRNOT00000001508 2 1 1 83 12 46325450 46325675 CTATCAAGGATGGAGTGATGG 58 46325719 46325738 ATATGGGCTTGTAGAGGAGG 58 NA Rattus norvegicus 81 AC098462.1 ENSRNOG00000054778 ENSRNOT00000079358 1 1 1 60 1 63246435 63246453 GAGGGTTCAACACATCCAC 59 63246477 63246495 GGCTTGAGATTCTGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360238 ENSRNOG00000037801 ENSRNOT00000057396 2 1 1 80 12 40555957 40555975 CAGAGATCGAGAAGGTTCC 57 40556016 40556061 CTCCTTCCTCTTCTTTGATCTC 58 NA Rattus norvegicus 81 LOC687780 ENSRNOG00000047365 ENSRNOT00000039337 2 1 1 60 6 86131308 86131327 CAGATCAAAGCTCATGTGGC 60 86131349 86131368 GAAGCACGACTTGATCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fau ENSRNOG00000046393 ENSRNOT00000048726 2 1 1 60 6 86921787 86921806 CAGATCAAAGCTCATGTGGC 60 86921828 86921847 GAAGCACGACTTGATCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 3 2 3 80 20 5118418 5118574 GATGTGGTCTTGACTGACAC 59 5118613 5118635 GTCCTACTCTGAATTCAGAAAGG 59 NA InUTR Rattus norvegicus 81 Timm23b ENSRNOG00000031285 ENSRNOT00000048004 2 1 1 60 6 75244317 75244338 CTCTGCACTGTATAACAACTGG 59 75244278 75244296 TCAGAGTGACTGTTGGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybbp1a ENSRNOG00000015236 ENSRNOT00000021134 1 1 1 80 10 59002942 59002961 ATTTGAACGGTTCTGGAAGG 59 59003004 59003130 CGGAAACACATGTAGCTGG 59 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 1 2 2 80 3 1388404 1389496 GGTAATTAAAGGTGAGGAGATCAG 59 1389534 1389553 TGAACACCCAGGATTACAGG 60 NA Rattus norvegicus 81 Fam21c ENSRNOG00000011653 ENSRNOT00000015620 2 1 1 80 4 148140549 148140570 ACATTGTCGTCTGCATAATGTC 60 148140610 148148959 TCATCGTACACCCGATTCTC 59 NA Rattus norvegicus 81 Acsl5 ENSRNOG00000016265 ENSRNOT00000022126 1 1 1 80 1 276275046 276275065 TGATGACCTGATGAAACGAG 58 276275105 276275876 TTCTCTTTGCCTAGATTCTCAG 58 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 1 2 3 124 2 208131872 208131890 ATGAAGCTCTGGAGCTGAC 60 208132308 208134869 AATAAACTCGTGGTTAGTGGTC 59 NA Rattus norvegicus 81 Magix ENSRNOG00000010092 ENSRNOT00000013553 2 1 1 80 X 15672444 15672465 TCTGCAGATATAGAAGTTGCAG 58 15672505 15673930 GTCAGATCTTTGATGCTGGG 59 NA Rattus norvegicus 81 Spata32 ENSRNOG00000003275 ENSRNOT00000004371 3 1 1 80 10 91292786 91292919 GAAGACAATGAGATGGGAACAG 59 91292727 91292745 CTCCAGATGTGGTACTGGG 59 NA Rattus norvegicus 81 Rb1cc1 ENSRNOG00000006833 ENSRNOT00000061884 3 1 1 80 5 13070593 13070613 GAAGAGTCTCTTATGATGCCT 57 13067117 13070553 GGCAACTTCATACATTTCCAC 58 NA Rattus norvegicus 81 Btnl2 ENSRNOG00000028541 ENSRNOT00000060366 1 1 1 80 20 4147940 4147961 TTTCCTGCTTCATCTACAATCG 59 4148000 4149479 GTTCTGTCTGGAGTTTCTCTG 58 NA Rattus norvegicus 81 Nup88 ENSRNOG00000006126 ENSRNOT00000009015 2 1 1 81 10 57582712 57582730 GAGTCCTCAGAAACCCACC 60 57582048 57582669 GTGTTCACCCTCTTCTTTCAG 59 NA Rattus norvegicus 81 Tiam1 ENSRNOG00000021569 ENSRNOT00000046486 1 1 1 80 11 29957470 29957489 GACTTAAACTGCCTCATGGA 58 29957126 29957427 GAGTACATCGAGCTCATCC 57 NA Rattus norvegicus 81 Haus3 ENSRNOG00000015255 ENSRNOT00000020576 3 1 1 83 14 81843879 81856525 GTGATCAGGAGCTAATGGAG 58 81856568 81856589 GAGCGAGAATATCAGTAAGGAG 58 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000034166 3 1 2 61 3 154044018 154044036 GCAGAACTGCTCATCATCG 59 154044061 154045358 GAGTACCTGAACACCTGCA 59 NA DesignRelaxed Rattus norvegicus 81 Smad9 ENSRNOG00000000091 ENSRNOT00000000102 1 1 1 80 2 144194412 144197195 CTTATCAACACTCAGACTTCCG 59 144197235 144197254 TGTTCAGTTCGTAGTAGGCA 59 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000091053 3 1 2 69 7 143883608 143883626 TCTTCCTTGTACCGCATCG 60 143883742 143883761 AAGCGATAAAGGATTCCACG 59 NA DesignNoJunction Rattus norvegicus 81 Ddx47 ENSRNOG00000007838 ENSRNOT00000011096 1 1 1 80 4 168780602 168780623 CTGTTTCCTCTAAGTACCAGAC 58 168780660 168781736 GGTAGGTGTCCTTGAATTTAGAG 59 NA Rattus norvegicus 81 Lrrc18 ENSRNOG00000020080 ENSRNOT00000027204 3 1 1 91 16 9253710 9256995 CCAGGAAGAATGGAGTGTG 58 9257050 9257068 CACTTTGGGTTCTCATGCA 58 NA InUTR Rattus norvegicus 81 Cfap57 ENSRNOG00000007037 ENSRNOT00000009196 1 1 1 80 5 137431114 137431133 TGATTCACATCTTCACCACC 58 137427521 137431074 ATACAAGTGAACGAATCTTCCC 59 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 3 2 2 80 1 69618891 69626053 ATCCTCACTGGTTTATCGGT 59 69626096 69626114 TGTGGTGCTTCAGTTTGTG 59 NA Rattus norvegicus 81 LOC100359615 ENSRNOG00000049398 ENSRNOT00000072707 3 1 1 60 6 26317578 26317596 ATCTATCCACAGCTCCACC 59 26317536 26317554 GATGCAACCGAATCTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 3 2 2 103 7 70479898 70480271 CGGATCAAATGTCGTTCGTC 60 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 Msc ENSRNOG00000007540 ENSRNOT00000009908 3 1 1 72 5 3955723 3955741 AGGATAGCTATGTGCACCC 59 3956511 3956529 TTGGTATCAGAGTCTGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Wnt2b ENSRNOG00000014385 ENSRNOT00000019349 3 1 1 122 2 207447440 207448829 CTATGCTCAGAAGCAGTCG 58 207447336 207447354 TATATGGGTCACAGCTGCA 59 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 1 2 2 80 2 206288317 206291580 TAAAGATTGGCCTCTATAGTCTAGG 59 206288261 206288279 TCAATACCACCCAGGTCTG 59 NA Rattus norvegicus 81 Cdc34 ENSRNOG00000060530 ENSRNOT00000088330 2 1 1 93 7 12902742 12902760 GCATCTCCATCCTCCATCC 60 12902539 12902686 AGGATGGTCCTGACATTCTG 59 NA Rattus norvegicus 81 Plekhb2 ENSRNOG00000014162 ENSRNOT00000019419 1 1 1 80 9 41372572 41372590 AGCAGGAACTCAAGTTGTC 58 41372632 41378469 CCATAAACTCCTGCATATGGG 59 NA Rattus norvegicus 81 Plekhb2 ENSRNOG00000014162 ENSRNOT00000019419 3 1 1 80 9 41372580 41372598 CTCAAGTTGTCTATGCCGC 59 41372640 41378477 GCTGTTGTCCATAAACTCCTG 59 NA Rattus norvegicus 81 Il1b ENSRNOG00000004649 ENSRNOT00000006308 3 1 1 81 3 121879040 121879580 CTTCATCTTTGAAGAAGAGCCC 59 121878980 121879001 CTGTCTAATGGGAACATCACAC 59 NA Rattus norvegicus 81 Npl ENSRNOG00000002775 ENSRNOT00000003713 1 1 1 80 13 70950804 70951563 GGTGAAGATTCGTGCTGAG 59 70950742 70950761 GTGTCACTGAACTTCAGTCC 59 NA Rattus norvegicus 81 RGD1560617 ENSRNOG00000004457 ENSRNOT00000038168 2 1 1 60 7 127965777 127965799 CTTCACTGGAGAAGATATTGAGG 59 127965818 127965837 AGCATCTTCACCTTCTTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028989.1 ENSRNOG00000050441 ENSRNOT00000040132 3 1 1 80 10 1659669 1660539 AGATCCTTACTGTATGTCGTAGAG 59 1660578 1660596 TCTAGTTGCTGCTCCACAG 59 NA Rattus norvegicus 81 Kcng3 ENSRNOG00000004535 ENSRNOT00000006094 1 1 1 127 6 6842160 6842178 TGTCTATGGTGGTGCTGTG 60 6795686 6842069 TTCAATTATCCCGGAGGGC 60 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000046521 ENSRNOT00000073993 2 1 1 80 9 90871513 90872070 ACAAGACCTTGGTACTCTGG 59 90872111 90872131 CACACGTTATCGACGTTACAG 60 NA Rattus norvegicus 81 Fam115c ENSRNOG00000050703 ENSRNOT00000071511 3 1 1 80 4 72058813 72072368 CCTCCATATCAGGTGTTGG 57 72058751 72058771 GTCCTGATGTCCAACATAGAG 58 NA Rattus norvegicus 81 Zap70 ENSRNOG00000016995 ENSRNOT00000023036 2 1 1 80 9 43351696 43352722 CTGCTGGATATACAAGTGGG 58 43352763 43352783 GCCATGCTGTAGTAATAGGTC 58 NA Rattus norvegicus 81 Fcer1g ENSRNOG00000024159 ENSRNOT00000029179 3 1 1 80 13 89603536 89603555 GTCCTTACCCTGCTCTACTG 59 89602392 89603334 GACAGCATCTGATTTCTCACG 60 NA Rattus norvegicus 81 Slc35g3 ENSRNOG00000014519 ENSRNOT00000019674 3 1 1 92 10 56367861 56368328 AGTCCAAGAAGAGATGGCTG 60 56367788 56367806 GAAGTGAGGCTGGATGGAG 60 NA InUTR Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 3 2 2 81 11 31654116 31654135 AAGGTGACAGCTATGTTCTG 58 31654177 31656849 TTTGAATAGACAGGGATCCAC 58 NA Rattus norvegicus 81 Ttll4 ENSRNOG00000017129 ENSRNOT00000023067 3 1 1 80 9 81946008 81946026 CCAGCCCTCATCTACAGTC 59 81946067 81946501 CAGTTTCTCCACTCTTTCATCC 59 NA Rattus norvegicus 81 Gsg2 ENSRNOG00000048660 ENSRNOT00000074018 1 1 1 60 10 59697460 59697479 TGTGAAGGAATCGTGTTGTG 59 59697419 59697438 CAGATCAGGGTCCGTTAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inca1 ENSRNOG00000037418 ENSRNOT00000056620 2 1 1 81 10 57310748 57311509 AGGGAATCATCAACGAACTG 58 57310686 57310704 CAGCCCTCTTCAAACACTG 59 NA Rattus norvegicus 81 Gtdc1 ENSRNOG00000031038 ENSRNOT00000059679 3 1 1 80 3 29421420 29421439 TATTTCCGAGTACTGTGCAC 58 29417253 29421378 AGCTTCCAACATTGCTACTC 58 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 3 2 2 93 10 56826114 56826218 TCTGTCAGGCTTCCTAAGG 58 56826275 56826293 CATGTAGATGAAGCTGCCA 58 NA Rattus norvegicus 81 Cntnap5b ENSRNOG00000032206 ENSRNOT00000047108 1 1 1 80 13 22587917 22587938 GAAAGACAGATGACCATGATCC 59 22587977 22590410 TTACCACTGCTATGACACCTC 60 NA Rattus norvegicus 81 Ston1 ENSRNOG00000016688 ENSRNOT00000022370 1 1 1 80 6 12374560 12378092 AAACACAAGTCCCGATCAG 58 12378136 12378154 TCCCAATCTGAAGGAACCT 58 NA Rattus norvegicus 81 Btf3 ENSRNOG00000016912 ENSRNOT00000022864 2 1 1 80 2 28423738 28423759 AAAGAAACGATCATGAACCAGG 59 28421544 28423698 TCTACGAGCAGTTCCTTTCC 60 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 3 1 1 87 3 123849077 123849747 AAGTGCCTTGTTAAGTGGC 59 123849008 123849026 GTTTACTGTGCAACTGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem74 ENSRNOG00000005114 ENSRNOT00000006791 1 1 1 60 7 82686933 82686953 CTTAGCACTTCTCCAACATCC 59 82686893 82686914 AGCCTGTTTGAATAGCATTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc28 ENSRNOG00000002026 ENSRNOT00000002771 3 1 1 88 11 31771352 31772779 CGGTCTGTGAAGATCACCA 59 31771282 31771302 GATGTAGTCTCAGGATCCGAG 59 NA InUTR Rattus norvegicus 81 Mvk ENSRNOG00000049604 ENSRNOT00000073774 3 1 1 83 12 47919379 47919397 TTGTCAGAAGTCCTGCTGG 60 47918397 47919332 CAGAGCTACTGGACCACAG 60 NA Rattus norvegicus 81 RGD1563746 ENSRNOG00000021953 ENSRNOT00000032856 1 1 1 80 10 90637521 90639837 GAGAACAAGCTAGAGTTGTGAC 59 90639873 90639896 CAGTAGAGATATTAGCATGAAGGG 59 NA Rattus norvegicus 81 Pth1r ENSRNOG00000020948 ENSRNOT00000028435 1 1 1 80 8 118989357 118989377 AGATGCTCTTCAACTCCTTCC 60 118988588 118989237 TAATCTCTGCCTGCACCTC 59 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 2 2 2 80 9 93096944 93097971 AAACACCAGACGCTAGTCC 60 93098014 93098033 ACTCGATAGCCATTTCACCA 59 NA Rattus norvegicus 81 Apoa2 ENSRNOG00000003500 ENSRNOT00000004662 3 1 1 80 13 89597925 89597946 GTTTAACTGACTATGGCAAGGA 59 89597987 89598588 TCTGAAAGTAAGCCTTGGC 58 NA Rattus norvegicus 81 Cym ENSRNOG00000018236 ENSRNOT00000024593 2 1 1 80 2 209965792 209965812 TCCTACTTCATAGGCTCACTG 59 209964995 209965751 GATTGTGATCCTGTCCACTG 58 NA Rattus norvegicus 81 Ccl3 ENSRNOG00000011205 ENSRNOT00000015139 1 1 1 145 10 70870368 70870934 TTCTCAGCGCCATATGGAG 60 70869992 70870010 CGGTTTCTCTTGGTCAGGA 59 NA Rattus norvegicus 81 Slc41a2 ENSRNOG00000008713 ENSRNOT00000011572 2 1 1 80 7 26559055 26561002 GGTTATAAGCAGCATCGGG 59 26561046 26561064 GGCGTGTAAACAACAATCC 58 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185,ENSRNOT00000073296 1 2 2 80 10 55922891 55922910 TTTGAGATGGAAAGCGTTCG 59 55922582 55922849 CTCTGAGCCAGTTCGATAGG 60 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185,ENSRNOT00000073296 2 2 2 81 10 55921116 55921134 CAACAACAGCTAGCTGTGG 59 55920741 55921071 CTCGAGCCAGAGTCTTGTC 60 NA Rattus norvegicus 81 Cnbd2 ENSRNOG00000019992 ENSRNOT00000027086 2 1 1 80 3 152462774 152464853 TACAGAATGTGTAAGTCTTCGC 59 152464893 152464912 TCCTTCCATCCAAGAGAAGC 60 NA Rattus norvegicus 81 Epha8 ENSRNOG00000013036 ENSRNOT00000017559 2 1 1 81 5 155298942 155299351 CATCTGCAAGAAGAGGCAC 59 155298879 155298897 TTGGCCATTCTGGTAATGC 59 NA Rattus norvegicus 81 Olr1262 ENSRNOG00000045981 ENSRNOT00000072858 3 1 1 60 2 46141167 46141185 AATCCACTCTGGGAAGGTC 59 46141208 46141227 GAGACAGCAATTATGTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309049 ENSRNOG00000014123 ENSRNOT00000018896 2 1 1 60 9 29337720 29337740 GTGAAGTATAACCGCAAGGAG 59 29337680 29337700 GTTCTAAGATCCACTCGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgif1 ENSRNOG00000015906 ENSRNOT00000021534 2 1 1 81 9 119182119 119183006 CACTACAGGTCTGTAACTGGT 59 119182058 119182076 TTTGGGTCTTTGCCATCCT 60 NA Rattus norvegicus 81 Gp1ba ENSRNOG00000025959 ENSRNOT00000035445 3 1 1 89 10 57260751 57260960 CTTTCTGCCTGACTGTTCAC 59 57261012 57261030 TGGAGACATCACAAGTGGG 59 NA InUTR Rattus norvegicus 81 Naip6 ENSRNOG00000033693 ENSRNOT00000072926 3 1 1 80 2 30386844 30390568 CAAGCCAGATTCCAGATCAG 59 30386783 30386802 TGCCATCTAGTCTCACAGAC 59 NA Rattus norvegicus 81 Arhgap30 ENSRNOG00000004192 ENSRNOT00000005619 1 1 1 80 13 89789480 89789499 CCTCATTTAGTGCCCAAACC 59 89789542 89790718 TGTCCTTAGACCTCAGCAG 58 NA Rattus norvegicus 81 Fam53a ENSRNOG00000017548 ENSRNOT00000023904 3 1 1 82 14 82397658 82397676 TCTCATCACGGAGAAGCTG 59 82397722 82402620 TCTCAGCAGAATACGGGAC 59 NA Rattus norvegicus 81 Zfp952 ENSRNOG00000029416 ENSRNOT00000043826 1 1 1 77 7 15280897 15280915 CAAACATGAGCGAGCTCAC 60 15283075 15283093 TAAGTGCAGTCCCTGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362981 ENSRNOG00000034226 ENSRNOT00000047211 2 1 1 131 8 33120951 33120969 TTCATTGTCTGTGGGACCT 59 33104775 33105690 GATGAGGGACCAGTAAATGTG 59 NA Rattus norvegicus 81 Myl12b ENSRNOG00000015733 ENSRNOT00000048125 2 1 1 125 9 119311097 119321423 CAGGTCAGATTTGAACCGC 59 119310990 119311008 TGAACTCCTGGATCTGGGA 60 NA InUTR Rattus norvegicus 81 LOC499746 ENSRNOG00000010002 ENSRNOT00000013278 3 1 1 103 3 2434224 2434243 GAAGGCTGTGAAATTCCTGG 59 2434041 2434158 TAGCATTGGACTGGGTGAG 59 NA Rattus norvegicus 81 Ntm ENSRNOG00000023720 ENSRNOT00000035454 1 1 1 80 8 30154106 30221150 CCTCATTGTACAAGTATCTCCC 58 30154047 30154065 GTGAGGCTGATGTTGTTCC 59 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177,ENSRNOT00000047444 3 2 2 80 X 20416506 20416527 GATCAAACAAAGAAGAGCCTCC 60 20416567 20418130 GAGACTGAGACCTGAAGGAC 59 NA Rattus norvegicus 81 Zfp423 ENSRNOG00000014658 ENSRNOT00000020028 2 1 1 84 19 20285811 20285829 GACCACCGTGATCTTACCC 60 20285877 20292393 ACTGGTACGTCTTCTTCCG 59 NA Rattus norvegicus 81 Rn60_10_0876.2 ENSRNOG00000026794 ENSRNOT00000036420 1 1 1 60 10 87792808 87792828 GGGAAACCAATAAGAGCACAG 59 87792768 87792787 GTATAGCCCTGTACCACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 2 3 3 80 14 6526878 6526896 GTTCTTGGATGATCCCACC 58 6522306 6526835 TTCATCGACATCCTTCTCAG 57 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 1 2 2 80 12 40624633 40624651 GAGTTTAAGCGTCTGGCTG 59 40624693 40625101 GTCACCATAGTCTGAGATCCC 60 NA Rattus norvegicus 81 Ntan1 ENSRNOG00000051382 ENSRNOT00000077695 1 1 1 80 10 3232201 3232220 GAGCTTCCTTTCAAGATCGT 58 3232262 3234474 AAATGCTAATCATTGGGCCT 58 NA Rattus norvegicus 81 Kcna10 ENSRNOG00000050416 ENSRNOT00000074358 1 1 1 60 2 209931543 209931562 TTAAGGACCCTGAAACACTG 58 209931585 209931603 AAGAGAAGCCAGAATTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 3 1 1 76 8 55037845 55038757 AGGTGCATCACTTCATGGA 59 55038797 55038815 TTCAGTTCGGGAGTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Cd3g ENSRNOG00000015945 ENSRNOT00000021390 3 1 1 80 8 49275478 49277572 CCAGTCAAGAGCTTCAGAC 58 49275015 49275033 TGTTCATATTCCCGGTCCT 58 NA Rattus norvegicus 81 Cacna1h ENSRNOG00000033893 ENSRNOT00000043626 3 1 1 80 10 14748777 14749724 TCCTCATCATTGTGGGCTC 60 14748715 14748736 TTTGCTTTGTCTCTGAGAACTG 59 NA Rattus norvegicus 81 AABR07002093.1 ENSRNOG00000048663 ENSRNOT00000074234 3 1 1 80 1 66313198 66313218 AGGCATAATAGACCCTCATGC 60 66310532 66313156 ACAGAGGTGGGTACTTGGA 60 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000082645,ENSRNOT00000030827 1 3 3 80 1 169452542 169452565 CTAGGAGACCTCATCTTAGATGTG 60 169449912 169452505 TATGGTGTTCTCTACACCCTG 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 1 3 3 80 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583922 100584973 ATGAAACACCTGAGTGATGAC 58 NA Rattus norvegicus 81 AABR07067419.1 ENSRNOG00000050591 ENSRNOT00000072642 3 1 1 80 9 44504029 44509175 ACTTATTGCTCTCATTGGCAC 59 44503969 44503987 AGACGAGAGTGCACATGAG 60 NA Rattus norvegicus 81 Pdxdc1 ENSRNOG00000002407 ENSRNOT00000003284 1 1 1 80 10 3301085 3301105 AGCATCCTCCAGTTAGTTCAG 60 3299063 3301045 TCCAATATTCTGGATTCGGGT 59 NA Rattus norvegicus 81 Tagln2 ENSRNOG00000008301 ENSRNOT00000011208 2 1 1 80 13 90807973 90808296 CTGGTTTCCTAAGAAATCCAAGG 59 90807915 90807934 AACCCAATCACATTCTTGCC 59 NA Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874,ENSRNOT00000080538 2 2 2 80 X 158353880 158358980 ATAGCTTGGAAGAAGGCCTG 60 158359129 158359148 GGCTTATCTGCATTCCTCCT 60 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 2 2 2 80 2 206591828 206591848 TTCAGAAAGGATCGATTGACC 58 206575543 206591786 TTGTAGTGCATGGGATGGT 59 NA Rattus norvegicus 81 Chrnd ENSRNOG00000019527 ENSRNOT00000026504 1 1 1 80 9 94288100 94288118 GTTTGGGAACATCACCGTC 59 94288161 94288336 CCGTCATTGTTGTTCTCCAG 59 NA Rattus norvegicus 81 F2rl2 ENSRNOG00000018054 ENSRNOT00000024292 1 1 1 80 2 26240454 26240475 TGAAAGTCCTTATCTTGGTTGG 58 26240514 26244178 CTGAAACATGTTTCATGCCAC 59 NA Rattus norvegicus 81 LOC102551267 ENSRNOG00000049311 ENSRNOT00000071814 3 1 1 60 9 18001206 18001224 GGAACCATACCCAGACCTC 59 18001245 18001266 CTCCTTCAATTTGAGTCTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sit1 ENSRNOG00000021546 ENSRNOT00000035040 2 1 1 106 5 58986845 58986986 ATTTACAGACAGGACGGCT 59 58986666 58986684 CAGACTCGTGTAACACGTG 59 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 1 2 2 80 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638389 93638408 TCACACTTAGCTGTAGGTGC 60 NA Rattus norvegicus 81 Gpr26 ENSRNOG00000047057 ENSRNOT00000075540 3 1 1 81 1 203971833 203978146 ACATCCATCCCAGTGTGAG 59 203978190 203978209 AAGGTGCTGATCTTCTTGGT 59 NA Rattus norvegicus 81 Slamf8 ENSRNOG00000008736 ENSRNOT00000011869 2 1 1 80 13 90971180 90974474 CATCTCAAGGTGTACGATGC 59 90971119 90971137 ATTGAGAGGTTGAGCCTCC 59 NA Rattus norvegicus 81 Itga5 ENSRNOG00000057451 ENSRNOT00000087748 3 1 1 80 7 144976489 144976507 TATGTGACCAAGGTGACGG 59 144975007 144976445 CTCTGGATCCAACTCCAGG 59 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244,ENSRNOT00000012417 1 2 2 80 2 166427624 166428018 TTACAGAGATTCAACCGTCCC 60 166428060 166428078 TCAAGCATCTCAGCCAGAC 60 NA Rattus norvegicus 81 Slc25a4 ENSRNOG00000010830 ENSRNOT00000014704 2 1 1 115 16 49269410 49269428 GATGATTGCCCAGAGTGTG 59 49269505 49270274 CCGTGTACATAATATCAGCCC 59 NA Rattus norvegicus 81 Fbxo22 ENSRNOG00000022702 ENSRNOT00000020309 3 1 1 80 8 59782618 59782639 CAACATGAACATCATCTTGGCT 60 59782676 59785105 TCAATATCCAGAGGGTTCTTCTC 60 NA Rattus norvegicus 81 Tuba1c ENSRNOG00000021438 ENSRNOT00000033450 2 1 1 81 7 140719972 140719990 TCTTCAGTGAGACAGGAGC 59 140720032 140720184 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Rtn4rl2 ENSRNOG00000021513 ENSRNOT00000038250 3 1 1 118 3 72283072 72283090 ACTACATCTGTACCGGTGC 59 72274187 72282991 ACAAGTCATCCTGTAGGTGG 59 NA Rattus norvegicus 81 Aadacl2 ENSRNOG00000050858 ENSRNOT00000073078 3 1 1 80 2 150116527 150116545 AGATCCTACCCGAATTGCT 58 150116589 150126316 TCAATCTGCACCTGTTGTG 58 NA Rattus norvegicus 81 Zbtb33 ENSRNOG00000046156 ENSRNOT00000074486 3 1 1 60 X 124322379 124322398 AAGTAACAACACAGCGACAC 59 124322420 124322439 CACTTCCGAAATAGCAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076620 1 1 3 80 20 47041795 47044661 CTTCTACGACTTCAAGGTGC 59 47041734 47041753 CTGTCCTGATGCTGATACAC 58 NA Rattus norvegicus 81 AABR07025825.1 ENSRNOG00000032977 ENSRNOT00000048104 1 1 1 95 16 52025220 52025239 CTCGAGTACATGACAAAGGG 58 52025297 52025396 AAAGCCTGACAGAACTGAG 57 NA Rattus norvegicus 81 Selm ENSRNOG00000061231 ENSRNOT00000081123 2 1 1 80 14 83754148 83754480 CAGGACATTCAACTGTACCAC 59 83754520 83754540 ATTTCGGCTTAACAACACGAG 60 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 2 1 2 85 13 36147914 36150852 GCTGAAAGGAACTTCCAAGG 59 36141966 36141984 CCTTAGAGCTGGAGTTGCT 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 1 3 6 80 10 89221806 89221825 CTCCATTACTTACCACAGCC 58 89218043 89221765 CAATAAATGGCTCCTCTCCTG 59 NA Rattus norvegicus 81 RGD1560672 ENSRNOG00000025005 ENSRNOT00000031190 1 1 1 80 13 88266671 88266689 TCTATCACGTGAAGTCGCT 59 88266732 88271528 TCTTGACGATATCTTGCTGC 58 NA Rattus norvegicus 81 Ccdc170 ENSRNOG00000024280 ENSRNOT00000035962 1 1 1 80 1 41109629 41109647 AGCTAGTCCACCTTGAGAG 58 41109688 41112346 TCTGAGTCTTTAGCTTTCTCTG 58 NA Rattus norvegicus 81 Cylc2 ENSRNOG00000022406 ENSRNOT00000032726 1 1 1 82 5 66320287 66320305 ATTTCCCAAACCACCAAGG 58 66314954 66320242 CATCAATTACAGGAGCTGGA 57 NA Rattus norvegicus 81 Cacnb4 ENSRNOG00000007666 ENSRNOT00000059430 1 1 1 80 3 37990030 37990048 GTCTGGGAGAAATGGTGTC 58 37988347 37988580 TGTGCTCTGTCACTTTCTG 58 NA Rattus norvegicus 81 Mak16 ENSRNOG00000010783 ENSRNOT00000015297 1 1 1 80 16 64736290 64736621 GAAGATGAAGAAGAGGATGTGG 59 64736661 64736680 CTCAAAGTCACTCAGGTCAC 58 NA Rattus norvegicus 81 LOC100909434 ENSRNOG00000047473 ENSRNOT00000032351 1 1 1 60 2 182797959 182797977 ACTACGTGGCTCGAATCTC 59 182798001 182798019 GCCTCCTCTTCATTCTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008377.1 ENSRNOG00000052207 ENSRNOT00000041483 1 1 1 60 2 55055530 55055550 GGGAAGATTGTTGTGAACCTC 59 55055490 55055512 ATCTAGGGCTTATAACTCCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007399.1 ENSRNOG00000049010 ENSRNOT00000048860 3 1 1 60 2 12312042 12312060 CAAACTCAGATGTCTGGCT 58 12312000 12312019 GTGGCTTCGAATCTTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt35 ENSRNOG00000013754 ENSRNOT00000018566 1 1 1 80 10 88007661 88007680 AGATGAGGTGCCAGTATGAG 59 88007432 88007618 GTTCCTCAGTCTGGGTGTC 60 NA Rattus norvegicus 81 Map1b ENSRNOG00000017428 ENSRNOT00000023460 2 1 1 81 2 29683172 29683193 AGGACAAGGAAACTAAGAATGC 59 29681380 29683130 TTAGTGGTTCCTGGTCCTG 59 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000021609 ENSRNOT00000029395 1 1 1 80 5 146340450 146341805 TTATGCACAAGTAAGTATGCCC 59 146341844 146341864 GACCTTAACTATTGACCCACC 58 NA InUTR Rattus norvegicus 81 Nudc ENSRNOG00000051720 ENSRNOT00000079380 3 1 1 80 5 151756459 151756477 GTAAAGGTGGAGGAGAGCT 58 151755615 151756420 CTCCATCTTATTGATCTTCTCCAG 59 NA Rattus norvegicus 81 Smc1a ENSRNOG00000003139 ENSRNOT00000004364 2 1 1 80 X 21721839 21721857 TTTGAAGAGCGGATGGAGG 60 21721896 21721998 GTGGTATTTCTTTACCTGGTTCTC 60 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 1 2 2 80 2 116364365 116369572 AAGTGAAGCAGTTACCACC 58 116364303 116364322 AGGACACAAAGTCATTTCCT 57 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 3 2 2 80 1 219135373 219135393 GGATGACCTTTGTCATCTCCT 60 219135128 219135333 CATGACAGTGAAAGCAGTCTG 60 NA Rattus norvegicus 81 LOC100361934 ENSRNOG00000034182 ENSRNOT00000045705 3 1 1 60 X 42329071 42329091 TATCTGCTTCAGTACAACGAC 58 42329031 42329049 GAATCAAGGCAGGATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 2 2 2 80 3 80573370 80573388 ACCTGAGTGAGTTAAGCGA 58 80573429 80573745 TGAGGAAGTCATCATACTTGAG 57 NA Rattus norvegicus 81 Mtfr1l ENSRNOG00000016937 ENSRNOT00000022908 1 1 1 80 5 152743537 152743927 GGAAGCCAATGTGACTATCC 59 152743476 152743496 TTGGTCCCAATTCTTCTTACC 58 NA Rattus norvegicus 81 Ankrd37 ENSRNOG00000031335 ENSRNOT00000039909 3 1 1 136 16 49463462 49464338 CAACCAACAGGATGTGTTGG 60 49465023 49465041 GATCTTCAGCTGTTTGCCC 59 NA Rattus norvegicus 81 Zcchc16 ENSRNOG00000031638 ENSRNOT00000050854 2 1 1 60 X 116400088 116400107 CAGGATGCTACTACTTCCCA 59 116400126 116400148 TCTGATCGGTCTCACTATAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc63 ENSRNOG00000034266 ENSRNOT00000046604 2 1 1 80 12 39916784 39918864 GGATGACAAGATTGTTCAGATGG 60 39918904 39918922 GGATTGTTGGCCTCTTGTG 59 NA Rattus norvegicus 81 Bag2 ENSRNOG00000012709 ENSRNOT00000016948 2 1 1 82 9 38464712 38465823 AGATCAGCGATGGAGAAAGAG 60 38465867 38465885 CACTGAGACCTCCACAGTG 60 NA Rattus norvegicus 81 AABR07067526.1 ENSRNOG00000060633 ENSRNOT00000080275 1 1 1 60 9 51129584 51129602 CAATCCACAGAAACCACGG 59 51129629 51129647 GAGTCTCTGGGTCTCTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Iscu ENSRNOG00000000701 ENSRNOT00000000890 2 1 1 121 12 48625882 48627153 ACCACAAGAAGGTTGTGGA 59 48625779 48625798 CAGTTTCATGACGTCACCAC 60 NA Rattus norvegicus 81 LOC100361422 ENSRNOG00000031956 ENSRNOT00000040168 3 1 1 60 X 97261528 97261549 GTGTAATTACTTCTCTGTGCCA 59 97261489 97261508 CATTTGGAAAGAAGGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprasp2 ENSRNOG00000037658 ENSRNOT00000004260 1 1 1 60 X 106362075 106362096 TCACCATTGAATTTACACCTCC 59 106362116 106362135 ATAAAGGGTCTTGGGAAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col3a1 ENSRNOG00000003357 ENSRNOT00000004956 2 1 1 80 9 52057518 52057859 GCTTTCAGTTCAGCTATGGC 60 52057900 52057920 TGGAAAGAAGTCTGAGGAAGG 60 NA Rattus norvegicus 81 Rnf122 ENSRNOG00000023473 ENSRNOT00000031701 1 1 1 80 16 64771797 64778112 GCTACTTCATCAGCAAACTCC 59 64771480 64771500 TAGCATCACCTTTAAGCACCA 60 NA Rattus norvegicus 81 Galnt12 ENSRNOG00000008099 ENSRNOT00000011112 1 1 1 80 5 62735410 62735428 AGTGCTGACATTTCTGGAC 58 62735471 62738778 TCCTTCTCATGGATCCTCTG 58 NA Rattus norvegicus 81 Qars ENSRNOG00000060912 ENSRNOT00000082628 2 1 1 80 8 117302827 117302846 AAGATGGAAAGATGGACCCT 59 117302887 117303000 GGTAGATGCACCATTTATCCC 59 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 1 2 2 80 10 59574637 59574658 CAGCTCCTTTGTAGTTATGACC 59 59574699 59575110 CCACCTTCTGGGTTCTCTG 60 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050505 ENSRNOT00000071864 1 1 1 60 2 155176034 155176052 TCGTTCTAGACCAACTGCC 59 155175992 155176012 TCAATTCCGTCATACTTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbbp6 ENSRNOG00000012806 ENSRNOT00000035770 3 1 1 80 1 192957735 192959542 GCTGTTACAGAAGTATAAACCG 57 192959583 192959601 GAGTTGCTGGTAGTGATGG 58 NA Rattus norvegicus 81 Ttc21a ENSRNOG00000034089 ENSRNOT00000043831 2 1 1 80 8 128628652 128628674 GAAGAAATCCATCAAGTACCTGG 59 128628714 128629920 AAGTACTTTGCCTTGCCCA 60 NA Rattus norvegicus 81 Pdcl3 ENSRNOG00000013286 ENSRNOT00000017882 1 1 1 80 9 45675664 45675682 TAAGGAGAGCCTGAAGGAG 58 45675725 45677915 TATGTCTTCACCACTGACTG 57 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 3 2 2 80 5 76414450 76415252 AATCCAGAATGATCAGGTGGA 59 76415292 76415312 AGCATTCTGAAATTGGCTCAC 60 NA Rattus norvegicus 81 Dnajc14 ENSRNOG00000006844 ENSRNOT00000037332 1 1 1 80 7 3238500 3238520 GCTACAAGATGACCTCAAGGA 60 3238559 3240853 TCCATTTCAAACCTCCTATGCT 60 NA Rattus norvegicus 81 Olr75 ENSRNOG00000050328 ENSRNOT00000049036 3 1 1 60 1 168205024 168205044 TTCACATCGAAACTGACAACC 59 168205065 168205084 CATGAGCAGACTCTAAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tchp ENSRNOG00000001191 ENSRNOT00000001577 2 1 1 83 12 47641222 47642452 TGATGAGCGAGGTTCTGAC 60 47641157 47641175 TTAGGGTCTCCTCTTGTGC 59 NA Rattus norvegicus 81 Gatc ENSRNOG00000001161 ENSRNOT00000001536 2 1 1 80 12 46995211 46995231 TGTGCAGAAGAACTACTACAG 58 46995271 47038027 TGGCAAAGGAATATTACCTGG 58 NA Rattus norvegicus 81 Gdpd3 ENSRNOG00000019685 ENSRNOT00000026688 3 1 1 80 1 198200815 198200912 AACTCATTCACAAGGTAGCC 58 198200953 198200973 TTGAGTTCTTCTCTGAAGTCC 57 NA Rattus norvegicus 81 RGD1308775 ENSRNOG00000004112 ENSRNOT00000005514 2 1 1 80 14 84145949 84145967 CCCAAGAGCCATTTGTCTC 59 84144108 84145907 AGAGGCTTTCATCTCCATCTC 59 NA Rattus norvegicus 81 Ptx3 ENSRNOG00000012280 ENSRNOT00000016541 2 1 1 78 2 158098108 158098126 AATGGACTTCATCCCACCG 60 158098594 158098612 TGATGAACAGCTTGTCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Cib2 ENSRNOG00000059834 ENSRNOT00000078571 1 1 1 80 8 59139734 59139753 GACCATCTTCACAGAAGAGC 58 59128241 59133982 GCATGAAGCTTGAGGATGTC 59 NA Rattus norvegicus 81 Spryd3 ENSRNOG00000010793 ENSRNOT00000055320 3 1 1 80 7 143733153 143733172 TACTACAGCTTGGATCACCA 58 143732838 143733110 GCCATTGTATAGCTTGCCA 58 NA Rattus norvegicus 81 Pdcd10 ENSRNOG00000010147 ENSRNOT00000013585 3 1 1 82 2 173977783 173977803 CGGGCACTTAAACAGATTCTC 59 173971482 173977742 GCTATATCCTTGATTGTCTGCA 58 NA Rattus norvegicus 81 Lhx5 ENSRNOG00000001392 ENSRNOT00000001883 3 1 1 84 12 41668767 41668787 ATCGACGAGAACAAGTTTGTG 59 41668097 41668722 AGGATGACACTGAGTTGAGG 59 NA Rattus norvegicus 81 Henmt1 ENSRNOG00000042814 ENSRNOT00000066924 1 1 1 80 2 211745915 211746273 ACTGGACCATACATTCATACCC 60 211746314 211746332 GTTGATGGTGATGGTGGTG 59 NA Rattus norvegicus 81 Henmt1 ENSRNOG00000042814 ENSRNOT00000066924 2 1 1 80 2 211744038 211745868 GGCTCACTACATAAACGTGG 59 211745911 211745929 AATGTATGGTCCAGTTGCC 58 NA Rattus norvegicus 81 Pwwp2b ENSRNOG00000036649 ENSRNOT00000023619 1 1 1 64 1 211582229 211588439 AAGTCTGGTCTCTTTGGCC 60 211588467 211588485 ATGGCAGAGGAGTTGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Tmbim4 ENSRNOG00000004312 ENSRNOT00000005694 2 1 1 80 7 65000433 65000452 GTCTTTCTTGGCTTGACTGC 60 65000494 65001477 TAAACAAGCAAACAGCCCTG 59 NA Rattus norvegicus 81 LOC100910227 ENSRNOG00000047523 ENSRNOT00000074802 3 1 1 60 2 115290571 115290591 GTTTCTTGTACACAGTGATGG 57 115290610 115290631 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 3 2 2 84 10 91101007 91101025 TTAACTCCATCACCCACCC 59 91098702 91100959 ATCACGTATCGGTACCCTC 58 NA Rattus norvegicus 81 AABR07012616.1 ENSRNOG00000045806 ENSRNOT00000075261 1 1 1 60 2 199562598 199562619 AACAGCCAACTTCAACTATGAC 59 199562559 199562578 CACAACACAGAAGAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498300 ENSRNOG00000050163 ENSRNOT00000072695 2 1 1 93 13 99369392 99369415 CGGCGTGTTCTGTATTTCC 59 99369472 99369490 AAGATCACGAGGAACACCC 59 NA Rattus norvegicus 81 Ulk1 ENSRNOG00000037505 ENSRNOT00000056790 3 1 1 80 12 51931551 51931570 CTTACAGACTGCCATTGACC 59 51931613 51931959 TTTAGTCTGCGTACCACCT 58 NA Rattus norvegicus 81 LOC683684 ENSRNOG00000048516 ENSRNOT00000075757 2 1 1 60 X 20807179 20807199 ATGGGATCCAATGTCAATTGC 59 20807139 20807158 ATCTTGTGAGCTCTTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 3 2 2 80 10 89237653 89237674 ATCCACTCAGACATGAATCTCC 60 89237714 89239681 GTAAGTGGGACCATCCAGTC 60 NA Rattus norvegicus 81 Dscc1 ENSRNOG00000026502 ENSRNOT00000036399 1 1 1 80 7 94765452 94765471 CTGAGTTTCAGGAAGTGTGG 59 94763131 94765409 CCAGTGCTAAACCCTTGAG 58 NA Rattus norvegicus 81 Tmed5 ENSRNOG00000000073 ENSRNOT00000000083 1 1 1 80 14 2632189 2633865 CACCTCCTCGACTTTAAAGC 59 2633908 2633926 TTCAATGTGAGCTGGTGTG 58 NA Rattus norvegicus 81 RGD1564839 ENSRNOG00000030278 ENSRNOT00000043590 1 1 1 60 13 53283999 53284018 CGGAAATTTGCCATGAAGGA 59 53284040 53284059 TATTGAGCCTGGTGTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 3 2 2 82 14 84650310 84650331 ACCTCTATCTCGTGTATAACGT 58 84647897 84650270 AAACTGAGGTCATCCAAATAGC 59 NA Rattus norvegicus 81 Gast ENSRNOG00000014740 ENSRNOT00000019863 3 1 1 82 10 88248168 88248301 CAACACTTCATAGCAGATCTGTC 60 88248343 88248361 CCAAAGTCCATCCATCCGT 60 NA Rattus norvegicus 81 Scn4a ENSRNOG00000012134 ENSRNOT00000016841 2 1 1 80 10 94540135 94540157 CATTGATGACTTCACATTCCTCC 60 94539657 94540095 AACTCTGTCACATACGCCA 59 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 3 1 1 131 14 3061548 3061566 GAGTCTCAGCTTACCGAGG 59 3061661 3063014 CGACGCTGGAGATACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Zglp1 ENSRNOG00000042601 ENSRNOT00000068598 2 1 1 82 8 22082054 22082072 AGAGGACTCCACTCTGGAG 60 22081811 22082011 GGTGCCATATTTCTTGTACCTG 60 NA Rattus norvegicus 81 AABR07052780.1 ENSRNOG00000046960 ENSRNOT00000070799 3 1 1 85 3 75020251 75020269 CAGTTGGCAAGTTCCTCTC 59 75020182 75020203 ACCAGATCAAGATGATCATCCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909677 ENSRNOG00000038396 ENSRNOT00000058473 2 1 1 60 X 45615568 45615589 CAAACCAACCAACTTATGACGA 60 45615608 45615628 AGCTTAGACGGAAGATGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrt3 ENSRNOG00000016284 ENSRNOT00000021792 1 1 1 80 1 243590320 243601267 TAAGCCAGATTTGACTGAAGAC 59 243601307 243601326 GTGTCTTTGTCACTGAAGGA 58 NA Rattus norvegicus 81 Rsl24d1 ENSRNOG00000052787 ENSRNOT00000091698 1 1 1 80 8 79792651 79792669 GTGTTATTTCTGCTCCGGG 59 79792713 79794232 CAGAATCGGAACACCTTGC 59 NA Rattus norvegicus 81 Ddb2 ENSRNOG00000014071 ENSRNOT00000018998 3 1 1 80 3 80031331 80031350 ATGTGTTTGATGGAAGCTCG 59 80031138 80031291 ACTCATTGAGCGAAGTAATACC 58 NA Rattus norvegicus 81 Vom1r55 ENSRNOG00000049810 ENSRNOT00000072551 2 1 1 60 2 168260142 168260162 CTGGGTTTATAGGCATGTTGG 59 168260102 168260123 GATGACCAGATTGAAACTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem115 ENSRNOG00000021899 ENSRNOT00000032263 3 1 1 77 8 116290923 116290941 CATCACTATCAGCCTCCCA 59 116293658 116293676 TCATTGAGAGCCTTCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Tirap ENSRNOG00000021420 ENSRNOT00000038312 1 1 1 80 8 36385888 36385908 CATGTACTATGTGGATGGCAG 59 36385360 36385852 AGTGTCTCCAGATAGTGTATAACAG 60 NA Rattus norvegicus 81 Ubqlnl ENSRNOG00000017016 ENSRNOT00000022852 3 1 1 60 1 169343327 169343349 CCATCATCCAAGAGATAATGCAG 60 169343289 169343307 TTCAGTGTATGCTCAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plscr3 ENSRNOG00000027914 ENSRNOT00000031640 3 1 1 81 10 56455549 56455568 CCTGTTCTACGAGTCGTAGG 59 56455609 56457391 ATTCATCCTTTGTCTTCACCTC 59 NA Rattus norvegicus 81 Htr3b ENSRNOG00000006920 ENSRNOT00000009574 2 1 1 80 8 53271448 53271467 TCCATGCTGTATTGGATGTG 58 53259943 53260222 ACTCATCATTCCAAACCTCTC 58 NA Rattus norvegicus 81 LOC367485 ENSRNOG00000048976 ENSRNOT00000075616 1 1 1 80 1 24903522 24904170 CTTCTATCGCAACCTGCAC 59 24904213 24904232 CTCTCCTGCTTCAATGTGAC 59 NA Rattus norvegicus 81 LOC100909485 ENSRNOG00000034120 ENSRNOT00000045802 1 1 1 60 X 18340803 18340826 GGAATATACCAAAGAAGATGGCTC 60 18340766 18340786 GGCTTTAACTTGGTGAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC110474.1 ENSRNOG00000036665 ENSRNOT00000054921 2 1 1 60 10 110438353 110438373 TGATCTTACTTACGCAGACCT 59 110438395 110438413 ATCCTTCAGGCTCTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr171 ENSRNOG00000025297 ENSRNOT00000036690 1 1 1 80 2 149325883 149325901 CAGAAAGATGGAACCGCTG 59 149321070 149325839 AACAACCTCAGGGTTGGTC 60 NA InUTR Rattus norvegicus 81 Lysmd4 ENSRNOG00000050624 ENSRNOT00000075131 2 1 1 81 1 128200419 128202369 CAGTATGGCTGCAAAGTCG 59 128202411 128202432 TGATCGATTTCAGAGCATACAG 59 NA Rattus norvegicus 81 Prr14l ENSRNOG00000048891 ENSRNOT00000072368 2 1 1 80 14 83245281 83245300 ATCTCCTCCTGATACAGTCC 58 83245340 83248842 GTACATTTCCTCTGTTCTTTCG 58 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119,ENSRNOT00000083009 1 2 2 80 10 78098395 78098415 CTAGAAGCAGATGAAGTGGGA 59 78093657 78098356 TAATTTCTCCTTAAGCGCATCC 59 NA Rattus norvegicus 81 Zfp628 ENSRNOG00000038622 ENSRNOT00000029136 1 1 1 120 1 72468084 72468102 TCAGAGTACCAACCTTCGC 59 72467787 72467805 CACTGTAGTCTCAGCAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Fbxo17 ENSRNOG00000019942 ENSRNOT00000027006 1 1 1 80 1 86916684 86917427 CTACATAGCTGACTGGTGGG 60 86917470 86917488 TCATGTTCGTCCAGTAGGC 60 NA Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 3 2 2 80 X 32077238 32078733 CCTTCAAAGAGATCAAACCGT 59 32077178 32077198 TGTAAGAAGGGTACACTTCCA 59 NA Rattus norvegicus 81 Mal2 ENSRNOG00000008615 ENSRNOT00000011485 3 1 1 90 7 94131130 94149063 TGCCTGGAGATTGTACTTGG 60 94149115 94149134 CAAACATGACCCATCCTTGC 60 NA Rattus norvegicus 81 Hmg20a ENSRNOG00000016905 ENSRNOT00000022976 1 1 1 80 8 61133825 61133843 AGCTGCTTCAGAGTGAGTC 59 61133884 61136473 CTCCTCGTTTACTTCTTTGCTC 59 NA Rattus norvegicus 81 Eri2 ENSRNOG00000014673 ENSRNOT00000019747 2 1 1 80 1 189543725 189543743 CCCAAAGGACTAAGTGGTG 58 189543092 189543682 CCGAGAATCATCTAAGCCAG 58 NA Rattus norvegicus 81 Bmx ENSRNOG00000003705 ENSRNOT00000005181 2 1 1 80 X 32032927 32032947 TGGCTGTAAAGATGATCAAGG 58 32032988 32035497 GGCTGAGTTTCATCATGGTC 59 NA Rattus norvegicus 81 LOC499331 ENSRNOG00000025644 ENSRNOT00000017133 2 1 1 61 1 234667125 234669677 CAGCCAGCACAATGAAGAC 60 234667082 234667103 GTAGAGGGTTCCTCCAATACTG 60 NA DesignNoJunction Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701,ENSRNOT00000027617 1 2 2 80 2 211468020 211469652 TTGGACTTCCTGATGAAGAC 57 211469693 211469713 GTATCTCCAACAGTGTCTGTC 58 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701,ENSRNOT00000027617 2 2 2 81 2 211469794 211469812 CATGACTCAGAAGCATGGA 57 211469854 211470296 GACACAAGAGTACCATAAACAC 57 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701,ENSRNOT00000027617 3 2 2 81 2 211468019 211469652 CTTGGACTTCCTGATGAAGAC 59 211469693 211469713 GTATCTCCAACAGTGTCTGTC 58 NA Rattus norvegicus 81 Cnnm1 ENSRNOG00000016302 ENSRNOT00000021876 2 1 1 80 1 263213287 263215958 CTTCATGGCCACAGAAGTG 59 263216002 263216020 TTGGGATGTTTCAGAAGCC 58 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864,ENSRNOT00000050275 3 2 2 80 9 52716794 52717105 ATTACTGAGCTTCTTCACACC 58 52717145 52717165 CAGCAGTGAGTTTACAAACAG 58 NA Rattus norvegicus 81 Nucb1 ENSRNOG00000020889 ENSRNOT00000028390 2 1 1 80 1 101491739 101491758 CATCAACGTGCTAGAGACAG 59 101490480 101491698 AGCTTTCCACTCTTAATGTCC 58 NA Rattus norvegicus 81 S1pr1 ENSRNOG00000013683 ENSRNOT00000018318 1 1 1 60 2 218656770 218656788 CATCGGAGTGGAGAAGGAC 60 218656728 218656747 GCAGATGAGAATGAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prc1 ENSRNOG00000013057 ENSRNOT00000017532 2 1 1 80 1 142104000 142104020 GAGTATGTTACAGAGCAGTGG 58 142104059 142104267 TCTCTTGTTCTTTAGTTGCCTC 58 NA Rattus norvegicus 81 Cracr2b ENSRNOG00000050158 ENSRNOT00000071831 1 1 1 86 1 214008293 214008311 AGATGTGGTTGCTGTCTCC 60 214008360 214008590 CTCAGATTCAGCTCCCTCAG 60 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143,ENSRNOT00000079855 2 2 2 81 5 157357777 157357796 GTAGCGTTTGCAAGAAACCA 60 157354662 157357733 TGTCTGTGCCTCGAATCTG 60 NA Rattus norvegicus 81 Pkd1l1 ENSRNOG00000004865 ENSRNOT00000006498 3 1 1 80 14 89144746 89144764 CTCAACCTCCATCATCCTG 57 89141838 89144703 CAAGTCCAGTGATACCTGAG 58 NA Rattus norvegicus 81 RGD1561453 ENSRNOG00000046395 ENSRNOT00000049732 1 1 1 60 1 240777302 240777323 AAGGACTATGGCAAAGAATCTC 58 240777341 240777362 TCTTGTATTCGAAGTACTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr45 ENSRNOG00000018508 ENSRNOT00000024961 2 1 1 60 1 167748690 167748708 CAACATCTATGGCATCGCT 58 167748730 167748750 GATAACAAAGAGCAGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam64a ENSRNOG00000008040 ENSRNOT00000010975 3 1 1 94 10 58616388 58616814 CTCTCCCAGTGAGTCTGAC 59 58616872 58616890 CCTTGATGGCTTTGTCCAG 59 NA Rattus norvegicus 81 Dcaf13 ENSRNOG00000004301 ENSRNOT00000005803 2 1 1 80 7 78024822 78024841 GGAAGGAATTTGTGTCTGCT 59 78024884 78036429 GATACACTTCCCTGCTTCG 58 NA Rattus norvegicus 81 Wrn ENSRNOG00000015440 ENSRNOT00000058805 3 1 1 80 16 62599084 62602258 AAATAGTGTTCAGACAGACCTC 58 62602298 62602317 GCTTTGTTCTCCATCTCCTG 59 NA Rattus norvegicus 81 Gyltl1b ENSRNOG00000006353 ENSRNOT00000051258 1 1 1 80 3 81278585 81278603 GAACGTGCAGTTGTCAGAC 60 81278393 81278545 GAATTCCAGTGGATCACTTTGAG 60 NA Rattus norvegicus 81 Cryab ENSRNOG00000010524 ENSRNOT00000059127 2 1 1 80 8 55179065 55180113 TCTCAGAGATGCGTATGGAG 59 55180154 55180174 TGACTTTGAGTTCCTCTGGAG 60 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 1 2 2 80 8 23143848 23143866 AACTTGAGGCCATTGTTGG 59 23143284 23143805 ATCCTGAAGATACTGCAGGT 58 NA Rattus norvegicus 81 Star ENSRNOG00000015052 ENSRNOT00000020606 3 1 1 80 16 71039484 71039742 TCTCTACTTGGTTCTCAACTG 57 71039424 71039442 CATAGCTTCCTCTCCTTGC 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000084938 2 1 5 60 20 4420940 4420958 TGTTGTCTCCTTCCGAAGG 59 4421112 4421130 GGATGTCTTGTTGTGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Nefh ENSRNOG00000008716 ENSRNOT00000011604 3 1 1 80 14 85188651 85190631 GGTTCCGAGTGAGATTGGA 59 85188589 85188608 TTATCTCCTCTTGGGCAGAG 59 NA Rattus norvegicus 81 LOC100911649 ENSRNOG00000022798 ENSRNOT00000029573 2 1 1 80 16 12977074 12977237 ATTGAACAGGACATGAGAAAGC 59 12977278 12977296 CACCAAGTTGTTCACCAGC 60 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 2 2 2 80 14 86113559 86113577 GTTTCAGGTTGAGGACCAC 58 86113405 86113516 AGCACAAATCTGTCTGTGTC 59 NA Rattus norvegicus 81 AC108546.1 ENSRNOG00000053404 ENSRNOT00000080448 3 1 1 84 8 62215273 62215291 GATCCCTGCTCAAGATCAC 58 62214183 62215225 GAGAAGAATCTGCCCTGTG 58 NA Rattus norvegicus 81 Hhatl ENSRNOG00000019404 ENSRNOT00000026261 2 1 1 80 8 130424967 130424985 AAAGTGCATTACCGCACTC 59 130423093 130424826 TACACGTATTTGCAAAGCCAG 60 NA Rattus norvegicus 81 Kdm2a ENSRNOG00000019145 ENSRNOT00000054850 2 1 1 80 1 219598510 219599846 AGGTGGAAAGGTCTTCTGG 59 219598448 219598466 TGTTTCCCTGATAGCAGCC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000077863 2 2 6 110 5 158125984 158126002 TGTACTCAGCAGTTTACGC 58 158126076 158127825 AGATCTCCCTGAGTAGCTG 58 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 2 2 2 80 9 64799878 64799898 AGTCATGATCAAGGAAGAGGT 59 64799938 64821481 TCAATGATGCAGTTGTGTAGC 59 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 2 2 2 81 3 153224178 153224196 TCCTGTACGAGATAGTGGC 58 153222822 153224133 AGATGGTGACAGTCTCTGG 58 NA Rattus norvegicus 81 LOC100359574 ENSRNOG00000025154 ENSRNOT00000030108 2 1 1 60 1 281864222 281864243 GTTCTGTAACCATCAAAGAAGG 57 281864264 281864282 GACTGCTGAATGGATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pstk ENSRNOG00000020605 ENSRNOT00000027967 2 1 1 80 1 201957297 201957318 CCTTCATAAAGCTGATGAGACC 59 201957353 201960360 GTAGGAGGTATTTGTTCATCTTTGG 60 NA Rattus norvegicus 81 RGD1559804 ENSRNOG00000045563 ENSRNOT00000071517 3 1 1 90 16 12193800 12193948 CAGACAAGAGTGAGAATGATTCTG 60 12193733 12193751 CCTAGCTTAACCACAGCCT 59 NA Rattus norvegicus 81 Vom1r-ps55 ENSRNOG00000049720 ENSRNOT00000038706 1 1 1 66 1 66749032 66749051 TCCTAGGCAATTCCTTTCTC 57 66749082 66749100 GTGGGTCTCACCATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Fndc7 ENSRNOG00000020421 ENSRNOT00000027690 1 1 1 80 2 211663436 211663455 ACTGAAGCTTACTTTCTGCC 58 211656655 211659382 CCTCTGTAAATCACCATCCC 58 NA Rattus norvegicus 81 LOC100911537 ENSRNOG00000042951 ENSRNOT00000014481 2 1 1 80 8 103830543 103830565 CTTCCTGTGACTTACACATTCTG 60 103830602 103836425 TCTTTCTTTGCTTGCACTTCTC 60 NA Rattus norvegicus 81 Cd82 ENSRNOG00000000047 ENSRNOT00000000052 3 1 1 80 3 82338672 82342676 AATCTGCTGTTCTTTATCCTGG 59 82338613 82338633 AGAAATGAAGCTGCTCTTGTC 59 NA Rattus norvegicus 81 Ccdc12 ENSRNOG00000020946 ENSRNOT00000028426 2 1 1 80 8 118975374 118975563 CATAGAGGAAGTGGACCTGG 59 118976553 118976574 TCTAGCTTCTTAGCCACATCTC 60 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 1 2 2 80 8 130768289 130768307 CAAGCTGTGGATCTCTTGC 59 130768350 130792986 TCCATATGTCTACTGCAGGG 59 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838,ENSRNOT00000048764 1 2 2 80 8 118164358 118164668 GCCTTCCTGAGTCATTACC 58 118164296 118164315 TAAGGGCAAGATGTCATCAC 58 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 1 2 2 80 8 62528622 62529284 CTCTGAAGAGTTACATGCTCC 58 62528562 62528581 GGTCGAACTCTAACATCCTC 58 NA Rattus norvegicus 81 LOC100911807 ENSRNOG00000050492 ENSRNOT00000073395 2 1 1 80 8 118432284 118432303 TAAGGACAAAGCTTCAGAGC 58 118430854 118432241 AGCCTTTCCTAGGACTGAC 58 NA Rattus norvegicus 81 RGD1306215 ENSRNOG00000015294 ENSRNOT00000020806 2 1 1 87 3 2679354 2679530 TCTTACCAGAACTTGATCACCA 59 2679288 2679306 AAACCAGGGTTGACGAGAG 60 NA Rattus norvegicus 81 Polr1e ENSRNOG00000012664 ENSRNOT00000029704 3 1 1 80 5 60578239 60578258 TTCTGAATAAGACCTCTGGC 57 60578300 60580441 TAGAGTCTTCAGCAAACAGG 57 NA Rattus norvegicus 81 Atp1b3 ENSRNOG00000011501 ENSRNOT00000015476 1 1 1 80 8 104199636 104199656 ATACATACAGCATGTCTGACC 58 104196616 104199596 CCACAGAATATGGCTTTAGGA 58 NA Rattus norvegicus 81 Trak1 ENSRNOG00000019262 ENSRNOT00000026106 1 1 1 80 8 130085332 130085350 CTTGGCTGCCGAAATTGAG 60 130085394 130086512 TTCTGGTGGGTGATGTCTG 59 NA Rattus norvegicus 81 Ap3m2 ENSRNOG00000018650 ENSRNOT00000025675 1 1 1 80 16 74088052 74088070 GCATCCTCTCCTTCATCCC 60 74088112 74089443 GAATGGCAACTAGGTTCTGTG 59 NA Rattus norvegicus 81 Arrdc1 ENSRNOG00000007622 ENSRNOT00000010169 3 1 1 80 3 2131467 2131485 AAGGATCACAAATGCAGCC 59 2131254 2131424 ATTGGGTTGCTCGATATCTG 58 NA Rattus norvegicus 81 Kif12 ENSRNOG00000007080 ENSRNOT00000010040 1 1 1 80 5 79005799 79005817 TCGCATACCTTGAACCAGG 60 79005559 79005755 TACCTGCTGAGAAGTTGGG 59 NA Rattus norvegicus 81 Isl1 ENSRNOG00000012556 ENSRNOT00000017305 1 1 1 81 2 48497612 48497630 TGGACGAAAGCTGTACCTG 60 48494638 48497569 CATTTGATCCCGTACAACCTG 59 NA Rattus norvegicus 81 Zmynd19 ENSRNOG00000007752 ENSRNOT00000010270 2 1 1 82 3 2162235 2167197 CTCCAGCAAACAAAGGGAG 59 2167239 2167261 CAGGGAATTGTTCTTCTATAGGG 59 NA Rattus norvegicus 81 Cldn18 ENSRNOG00000030386 ENSRNOT00000052043 3 1 1 82 8 107940521 107941261 ATGTTCATCATCTCAGGAGTC 57 107940459 107940477 GTGGACATCCAGAAGTTGG 58 NA Rattus norvegicus 81 RGD1562839 ENSRNOG00000045767 ENSRNOT00000048115 2 1 1 60 8 60751614 60751634 CCACTTTGTGAGGACTAAAGG 59 60751574 60751594 GAATTTGAATGGAATGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf8 ENSRNOG00000048321 ENSRNOT00000072920 3 1 1 80 5 79690720 79690739 CATTCTGGTCCTGGTAGTCC 60 79670492 79682591 GAGCAATTTCCTCCTTTAAGGG 59 NA Rattus norvegicus 81 Olr1341 ENSRNOG00000055356 ENSRNOT00000079438 1 1 1 60 8 44043620 44043640 ATTGGAACTACTTGGTCTCCT 59 44043661 44043680 GGTAAAGAGGAGTGACCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbx2 ENSRNOG00000000440 ENSRNOT00000082667 3 1 1 94 20 4359913 4359931 TACTCCCACCTGAGTAACC 58 4359989 4360091 AACCAGTTGGAAACCTGAG 58 NA Rattus norvegicus 81 LOC691110 ENSRNOG00000038477 ENSRNOT00000033209 1 1 1 81 8 61903289 61903307 CAGGATAGTGGTCTGGAGC 59 61903352 61904789 GTAGATGAGCTGGAGCTGG 60 NA Rattus norvegicus 81 Nnt ENSRNOG00000026842 ENSRNOT00000033627 3 1 1 80 2 52254580 52259422 CGAGGATTTGATACAAGAGCTG 59 52254521 52254539 CTCCTTCAAGTCCACCTCC 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230,ENSRNOT00000064905 3 2 2 80 20 47647772 47647790 ATTCTGCTTCTTCTGCCTC 58 47647832 47656007 GAGACTTGATCTTGTACCTGG 58 NA Rattus norvegicus 81 Rtn4ip1 ENSRNOG00000000279 ENSRNOT00000000304 3 1 1 80 20 48907179 48909473 AAAGGCACTGAAGCATCTC 58 48909517 48909535 ATCTCATCTAGGTACGGGC 58 NA Rattus norvegicus 81 Aknad1 ENSRNOG00000028025 ENSRNOT00000033443 2 1 1 80 2 211572407 211572425 ACAGAAGGACCAACTGTGG 60 211572469 211575725 GATCAGAACTGAGAGGCCA 59 NA Rattus norvegicus 81 Nbl1 ENSRNOG00000049402 ENSRNOT00000072299 3 1 1 80 5 157525866 157527735 CCATGTGGGAGATTGTGAC 58 157525804 157525824 GTACAATCTTCTCAACCAGCT 58 NA Rattus norvegicus 81 Golga7 ENSRNOG00000017956 ENSRNOT00000030960 1 1 1 80 16 73564500 73564518 TTCAGCGAGACTACAGCAG 60 73564560 73570346 GTCTATCAACCCTGTTCTCCA 59 NA Rattus norvegicus 81 Neo1 ENSRNOG00000006490 ENSRNOT00000009496 3 1 1 80 8 63690910 63690929 CTCACAGTCAATGGTACAGG 58 63689913 63690869 AACACGAGATTCATCTAGGTC 57 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 3 2 2 80 5 79398800 79400910 AGTGTGATACAGCTCTGGT 58 79400951 79400972 CTTCATTTCTTGGACATGATCG 58 NA Rattus norvegicus 81 Casp6 ENSRNOG00000009508 ENSRNOT00000013049 1 1 1 80 2 230190370 230190780 TGGCTTCTACAGAAGTAGGG 59 230190823 230190841 ATTAGGGCAGTTCCTCTCC 59 NA Rattus norvegicus 81 Rasef ENSRNOG00000024190 ENSRNOT00000058893 3 1 1 80 5 90469638 90469656 CCCAGGAAGGATTTCAGAG 57 90469697 90470015 TCATATCAGGAACATCTGTGTC 58 NA Rattus norvegicus 81 Msl3l2 ENSRNOG00000000801 ENSRNOT00000001050 3 1 1 60 20 37588858 37588877 AGAATCTGAAGGCACTACTG 57 37588898 37588918 TGGTATTCTGCTAAGAACCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114,ENSRNOT00000055839 1 2 2 80 5 159566213 159566598 ATCTCAGTGCCAGAGTGAC 59 159566151 159566169 TGTTGACCTGGTCCTTCTC 59 NA Rattus norvegicus 81 LOC100911034 ENSRNOG00000019736 ENSRNOT00000026820 2 1 1 80 3 152204779 152205444 AACAAGAGATGGAGTACGACC 60 152204719 152204743 CTGGAAGGTTCTTCATTATCTTCTG 60 NA Rattus norvegicus 81 Pdik1l ENSRNOG00000016536 ENSRNOT00000022141 1 1 1 80 5 152503750 152503770 GTGCATCCTACAGAAAGATGG 59 152499072 152503714 GTCTCTACAAGCTGTAAATAAAGGG 60 NA Rattus norvegicus 81 AABR07045454.1 ENSRNOG00000032964 ENSRNOT00000040519 3 1 1 60 20 48212592 48212610 ATACCACTTCTGCAGTCAC 57 48212633 48212652 TGGTCTTTCAGTTCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1694 ENSRNOG00000000747 ENSRNOT00000000974 3 1 1 60 20 847774 847793 CAGGGACTTGGATTAGTGGA 59 847733 847751 GCTACAACAGTGAGAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cer1 ENSRNOG00000010518 ENSRNOT00000014008 3 1 1 86 5 101005838 101005856 AAGTACACTGGGAAACCTG 57 101004119 101004137 GGTTGTTCTGGACAGTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Spag4 ENSRNOG00000019566 ENSRNOT00000026578 2 1 1 80 3 152145735 152145874 TGACTCTAAGCCAATACCACC 60 152145914 152145934 GGAGTTTACTCAGTTCTGCCT 60 NA Rattus norvegicus 81 Gtf2e2 ENSRNOG00000014422 ENSRNOT00000058872 1 1 1 80 16 62114546 62114960 AGAAAGTGGCCTCTATTCAG 57 62114485 62114504 CCAAGTGTTCATTGTGAGTC 57 NA Rattus norvegicus 81 Adam32 ENSRNOG00000025728 ENSRNOT00000038266 2 1 1 80 16 71960041 71960062 AATGATAGGTTTGGCAACTGTG 60 71960100 71966947 TCTCCCACATATGAGATTCCTC 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000091208 1 1 2 92 3 156775222 156775240 GAACAGTGAAGCATGGGAG 59 156774314 156775166 TCTGTATCGAGCTGACGTC 59 NA DesignNoJunction Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051,ENSRNOT00000084974 3 2 2 77 16 70665544 70665562 CGGTACGATAAGGACAAGC 58 70661770 70661788 GTGAAGGAGAGGGAAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Defb1 ENSRNOG00000013768 ENSRNOT00000018427 3 1 1 61 16 75309002 75309020 CTTCTCCCAGATGGAGCTG 60 75294613 75294631 ATTGATCTGTTCTGCGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Defal1 ENSRNOG00000029462 ENSRNOT00000049394 2 1 1 81 16 75367199 75367791 AGATTTACGCGTAAGAAGGAC 58 75367834 75367852 CCTTGATAGCCGAATGCAG 59 NA Rattus norvegicus 81 Frmd3 ENSRNOG00000006503 ENSRNOT00000065792 3 1 1 80 5 90094335 90094355 GGTAAAGTTGCTAAAGAGGTG 57 90080229 90094294 AGTAATGTTGACTCTGTGCA 57 NA Rattus norvegicus 81 Spata2 ENSRNOG00000009207 ENSRNOT00000012604 3 1 1 81 3 164232597 164233230 GCAGCATCAAGACCTACAC 59 164232534 164232553 TTTAGAATGGCTCGGATGTC 58 NA Rattus norvegicus 81 Champ1 ENSRNOG00000000112 ENSRNOT00000000124 2 1 1 113 16 80850261 80850279 CTCTTCACTCCAGGACACC 59 80843176 80843194 AAGCTTATCGCTGGTTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pomk ENSRNOG00000014628 ENSRNOT00000019630 1 1 1 130 16 70864638 70864656 CGGGTTACTTCAGAATGGG 58 70864747 70867296 CCATTCAGACAGAAAGACTCTC 59 NA Rattus norvegicus 81 Pomk ENSRNOG00000014628 ENSRNOT00000019630 3 1 1 132 16 70864636 70864655 TCCGGGTTACTTCAGAATGG 60 70864747 70867296 CCATTCAGACAGAAAGACTCTC 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000085378 1 3 4 81 5 160361432 160362979 CATGCAGATATGGCATACACC 59 160363022 160363040 AGGAAGGGCAGAAGTTCAC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000085378 3 3 4 83 5 160358802 160358820 CCAGAGGTTCTCACACCAG 60 160358865 160361425 GATCTTCCCTGGAGTACAGAC 59 NA Rattus norvegicus 81 Igsf21 ENSRNOG00000049959 ENSRNOT00000074336 2 1 1 80 5 158505049 158505067 AAATCATGATGACGCCCAG 58 158504519 158505008 GGAAGACCTCATTCTGAAATCC 59 NA Rattus norvegicus 81 Rae1 ENSRNOG00000021295 ENSRNOT00000038182 1 1 1 81 3 171023411 171023429 ATACCCGGTCGTCAAATCC 60 171023473 171024462 ACAGCCATCGGATAGATCAC 60 NA Rattus norvegicus 81 Defb38 ENSRNOG00000032089 ENSRNOT00000050296 3 1 1 87 16 75058625 75061685 CAACCAAGCTACTGATCAGG 58 75061734 75061753 AGAAATAGACAACCATGGGC 58 NA Rattus norvegicus 81 Pramel7 ENSRNOG00000021949 ENSRNOT00000039101 3 1 1 80 3 75547608 75548220 GAAATATCGCCTCAGGATGC 59 75547547 75547566 CCAACCTGCATATCTGAGGA 59 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000010298 3 1 3 117 3 153450223 153451894 CTGGAGAGCATCTTGGTCC 60 153450124 153450142 GTAGCAAAGTGTACAGCGG 59 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 3 1 1 115 3 171302471 171302489 ATGGTGGTGATGATCACGT 59 171296484 171302392 CATCCTTCCGAGGACAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Defb21 ENSRNOG00000023154 ENSRNOT00000031613 1 1 1 91 3 148047688 148048772 GATCCCAGACTATAGTGCTGAG 60 148048822 148048842 ATGTTTCCATGACCATTTCCC 59 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252,ENSRNOT00000090036 3 2 2 80 16 62226129 62226151 CTCGGAATTCATACATGATCACG 60 62225061 62226090 TTCTCCTTGATGACATGCCA 60 NA Rattus norvegicus 81 AABR07026311.1 ENSRNOG00000038375 ENSRNOT00000058436 1 1 1 91 16 71438656 71438676 CTGGAAAGTCTGGAAAGGC 59 71438731 71438749 CAGGTGTCGATGAATACGG 58 NA Rattus norvegicus 81 Slmo2 ENSRNOG00000046644 ENSRNOT00000075573 2 1 1 80 3 172570793 172570813 CCATTGTGAAGTCTGTAAGTG 57 172569545 172569734 CCATAAATCCATCATGCACAG 58 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974,ENSRNOT00000088458 2 2 2 80 16 71182309 71192900 AAATTAACACAAGAGGTGCCC 59 71182249 71182267 GCTTCTCATGAACCCATGC 59 NA Rattus norvegicus 81 Matn4 ENSRNOG00000014021 ENSRNOT00000018844 2 1 1 81 3 160841475 160841493 GTGGGATTGGTGTTCACTG 59 160841326 160841432 TGACGATACCTTCCTCTTTGG 60 NA Rattus norvegicus 81 Alg11 ENSRNOG00000012841 ENSRNOT00000017164 2 1 1 82 16 74858020 74859972 TGGGATTGGAGTTGTCGAG 59 74857956 74857974 TGACGATGTCAAGCTTTGG 59 NA Rattus norvegicus 81 Sdc4 ENSRNOG00000014297 ENSRNOT00000019386 2 1 1 80 3 160878069 160879380 TCCGGAGATCTAGATGACAC 58 160877345 160877365 GATGTGGTTATCTAGTGGCAC 59 NA Rattus norvegicus 81 LOC686662 ENSRNOG00000042867 ENSRNOT00000064470 3 1 1 60 16 81479614 81480638 TCAAGAAGTTGAAGATGGAGGA 59 81480658 81480677 AGCAGGTAGTTGTTTCTGTC 58 NA DesignRelaxed Rattus norvegicus 81 Defb9 ENSRNOG00000038149 ENSRNOT00000058061 1 1 1 80 16 75176455 75179043 CTATGACACTCCAGTTGTTGG 59 75176395 75176413 TACCCTCTGATTCTCTGGC 58 NA Rattus norvegicus 81 LOC100912267 ENSRNOG00000046517 ENSRNOT00000047252 3 1 1 60 16 7411962 7411982 GTATTTGGATTCAGAACCCAC 57 7411922 7411941 CATAGATCATGCCAAAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tktl2 ENSRNOG00000014185 ENSRNOT00000018987 3 1 1 60 16 24949828 24949847 GACGAGCTTTCTCAACAAGG 59 24949787 24949806 GAGGTTTGATAGTGAACGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910977 ENSRNOG00000011397 ENSRNOT00000015144 1 1 1 60 16 54533214 54533233 GAAATCAAGCCCAAGAACCT 59 54533173 54533193 CACGGTCTATCTTATGAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC107446.2 ENSRNOG00000047948 ENSRNOT00000038429 3 1 1 90 3 57771787 57771808 AAAGCTCATTTCCTGGTATGAC 59 57771858 57772028 TAGGTTCTGCATCTTGGAGG 59 NA Rattus norvegicus 81 Bpifa5 ENSRNOG00000013908 ENSRNOT00000020713 1 1 1 80 3 149644445 149644464 CTACTATGGAGGGACTCCAG 58 149644505 149644960 CCTTGTCTGAAAGCTTCTCTG 59 NA Rattus norvegicus 81 Bpifa5 ENSRNOG00000013908 ENSRNOT00000020713 3 1 1 81 3 149644444 149644463 CCTACTATGGAGGGACTCCA 60 149644505 149644960 CCTTGTCTGAAAGCTTCTCTG 59 NA Rattus norvegicus 81 Purg ENSRNOG00000015426 ENSRNOT00000020683 3 1 1 60 16 62482662 62482681 CGCTTCCTAAAGATAGCCGA 60 62482621 62482641 TCTTTCTGATATTGTCCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F10 ENSRNOG00000033444 ENSRNOT00000026677 2 1 1 80 16 81812847 81813838 ATATGAAGATGGTGACCAGTG 58 81812787 81812806 CATGTATAACTCCCAAGGCC 58 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 3 2 2 80 16 79918809 79918828 AGACGATGAATGTATTCCCG 58 79896455 79918766 TTTGTGTAGGAGACAGCTG 57 NA Rattus norvegicus 81 LOC100362655 ENSRNOG00000045897 ENSRNOT00000018375 3 1 1 73 16 75123021 75123039 CCCTTCAGGTCATGAAGAC 58 75123076 75125450 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 AC114391.2 ENSRNOG00000061751 ENSRNOT00000058039 2 1 1 60 16 75498857 75498876 TGGAGGAGATAAAGGCACTG 59 75498314 75498332 GATTCTGCAAGAGCAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07024666.1 ENSRNOG00000049047 ENSRNOT00000023369 2 1 1 60 16 11214836 11214854 TAAAGTTCAAGGTCCGCTG 58 11214794 11214815 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073021.1 ENSRNOG00000056364 ENSRNOT00000082771 3 1 1 81 4 82069790 82076536 CTTGCCTTCTAAGCTCAGC 59 82076580 82076599 GATGGTTAACAGGGATCCCA 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699 2 1 2 80 2 196494761 196494780 AGATGCTCCATGTCTTCTGG 60 196494820 196495005 GTTCATCTTCTACCAGCTTTCC 59 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578 1 2 3 87 3 3832187 3832441 GAATTTACCCGAAGGAGGC 58 3832118 3832136 TATTCCAGGCCATATCCCA 58 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 1 2 2 80 15 34356666 34356685 GCCATCCATAAGCACTACAG 59 34356727 34356898 GGCAGCTAGATACTCAAGAC 58 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000084758 1 1 2 146 8 64184098 64190008 TTGGAATGTCCCAAATGCC 59 64179763 64183989 GTTACAGTTGTACCAGGCAG 59 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000084758 3 1 2 147 8 64184098 64190008 TTGGAATGTCCCAAATGCC 59 64179762 64183987 GGTTACAGTTGTACCAGGC 58 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 3 3 3 91 2 219086269 219094350 AACTACAAGTCTACACCTCCC 59 219086198 219086216 ACATGTCATCGTCACAGCA 60 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748 2 1 2 80 2 248789492 248810739 ACTCTGCAGATTGTCCGAG 60 248789430 248789450 AGGCCATCAATCTATTGTTGC 59 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748 3 1 2 81 2 248789493 248810740 GACTCTGCAGATTGTCCGA 60 248789430 248789450 AGGCCATCAATCTATTGTTGC 59 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065 1 1 2 80 1 56163459 56166049 CTCTGATTCCGTAACTTCACG 59 56163399 56163417 CTTATCTGCTGGTCCAGCT 59 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351 2 1 2 81 3 109866045 109866063 AGCCTCAACAACAGATGTG 58 109866106 109866643 CCTGTTTAACATCTTTGTCGC 58 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 3 2 3 80 2 188404346 188404984 AGATCCAGGACGACTACCT 59 188404284 188404304 ATTTGTTGTCCTGGATGTCAG 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007 2 1 2 124 8 47260904 47261433 AGAGCTGTGAACATTGTAGG 58 47259964 47259984 GTAACTTTCCTCCACCTTCTG 58 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 2 2 2 86 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780745 132780766 CTGTTGATTTCCTTGATCAAGC 58 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000090097 3 1 2 83 13 26807849 26811207 TCATCCAAGTCACAGGAGG 59 26807784 26807803 CCAGAGTTATAAACGCTCCC 58 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000012334 1 1 2 80 3 6574515 6574534 TCCAACGATGAGGAAATGTC 58 6574576 6578726 GTAGCCTTTCTTGGTAGCAC 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268 1 1 2 80 4 64474896 64474915 TTCTAGTTGTTCGTGGAGAC 57 64472381 64474853 AAACTGACTGCAAGTCCTC 58 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 1 2 3 80 13 26010247 26010265 ACAATTGTGGTGTAAGCGG 59 26010309 26011299 GTCTGTAAGTGCCTTGCTG 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 2 2 2 80 1 32224227 32224999 CAACAGAACAGGATTTGTGC 58 32225039 32225060 GTAATATTCAAAGTCTGCCGGT 59 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 1 2 2 80 13 94041679 94050339 GCCTTTGTGTCGAACTCTC 59 94041617 94041636 ATCAATCACGCTGTAGATGG 58 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590 2 1 2 80 1 137869650 137869669 CTTATACCCGAAAGCACACC 59 137923968 137947270 GGCTGTTAGACTTGGATTTCAG 59 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 3 2 2 83 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347596 TCTCCTTGTCCCTTCAATACAG 60 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000085905 3 1 2 80 X 22411487 22411615 ATCTTCAGGTACAGGATCTCAG 59 22411428 22411449 TTGTGAAGTATGGGTTTGTCTG 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 2 2 2 80 17 38460405 38460425 CTGGTGTGCTCCAATTATTCC 59 38460465 38461123 TTTCAAGAGGACCTCAGACTG 60 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014030 3 1 3 82 4 156411641 156412382 TAACTCTGAGGGCACATCG 59 156411577 156411597 CAAATTCCACCTGAAGAGCAG 60 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000085675,ENSRNOT00000014030 2 2 3 80 4 156426699 156427113 GAAGATGAGTTGGTGGCAG 59 156426637 156426657 ATCCATCTTGAAGGTCTGAGG 59 NA Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 3 2 2 80 4 34262202 34263116 GCTAAGTTGGTTCAGGGAC 58 34263158 34263178 TTTCCTGTTGTATCCAACTGC 59 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 2 2 2 89 17 39511103 39511881 TCAGATACATGTAGAGCTCTACC 59 39512725 39512747 GCAGTCTTGTCTTTCCTAATCAC 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 3 2 2 80 1 89538039 89538057 GAGACCCTACTATCGACGA 57 89535302 89537996 GGATGTATTCTGTGAGAGGC 58 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743 1 1 2 147 3 129897325 130009855 TTTGTCATCAAATGCGGGA 58 130014618 130014639 CCTTAACTCTGGAATCAATGGT 58 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665 2 1 2 80 15 40587858 40587877 GTTTGGAGAGTTCAGGATGG 58 40587920 40588398 CAACCACTATTGCTTTGGC 58 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501 3 1 2 106 14 84703626 84705942 CACCACTGCAGGAATTGTG 60 84703538 84703556 CAAGACTTGCACACTCGAC 59 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000078838 3 1 2 89 14 84703624 84705232 ATCAAACGTGGAATTGTGGG 59 84703554 84703572 GACTGGGTTCAAAGAGCTG 59 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 1 2 2 84 1 71253363 71253385 GTGATCTCATTACTGGAACAAGG 59 71253429 71260666 CATACTCCCAATCAGGGCA 59 NA InUTR Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 1 1 1 61 1 247476472 247476490 GGGAAGATTCACAAACCCA 58 247473636 247473654 ACTGAGATTCCCAAGTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 2 1 1 61 1 247476471 247476490 GGGAAGATTCACAAACCCAG 59 247473636 247473654 ACTGAGATTCCCAAGTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 3 3 3 80 X 37983848 38026666 AGAACCAATAAACGAGGAGAG 58 37983788 37983807 AAGCTCATCGTCATTCTGAG 58 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846 1 1 2 80 5 24599348 24602721 GTAAGTTACCATGCCTGTCTC 59 24599288 24599306 GATAAATGGCAGCTTCGGT 58 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000088676 1 1 2 80 1 80172756 80172796 CACCCTACCTCAGATGAAGTC 60 80172696 80172714 GAGTCATCACTGGAGCTGG 60 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 1 2 2 80 13 96231313 96231333 AGGTGGTTACTCAAACAGAGG 60 96231029 96231271 CGTCCTCTGAAGTTCTGGT 59 NA Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 1 2 2 80 20 6754364 6754382 GTACACCACCTGCATTGTC 59 6751168 6754320 TGGATGTACAGCTTGTCGG 60 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 2 2 2 80 15 42860326 42860344 CTACATGCAACGCTATGCC 60 42851662 42860284 TTGAAGAATCTCCTGAGCTCC 60 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000079437 1 1 2 80 10 31005129 31006156 ACAACAGAATATGCAACAGCC 60 31006196 31006216 AGCATGTTTGATGGAGAACTG 59 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000075494 3 1 2 81 9 9735481 9735501 GTCAAGGTCTTCTCTGGCT 59 9735544 9735564 CTCCAGAATCAGCCATTTGAC 59 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 1 2 2 80 12 19520751 19525972 ACATGAGAAACATGGCCCT 59 19526016 19526034 GGTGGTAGAATCCAGAGGG 59 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512 1 1 2 91 17 42926498 42926519 TCAGTTTGTCTCTGACAGCA 59 42926426 42926444 AAGCACAGTTGGTTTGGAG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000041253 1 1 4 82 10 39323284 39323302 AGCTGGAACTGGAGAACTG 59 39306473 39323239 TTTCTGTTCCTCTGTCACGA 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 1 2 2 80 15 28545453 28546849 AGTAACCAACCAAGTAGCTC 57 28546890 28546910 TCTTCTTCCTGTTTATGCTGG 58 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000079864 2 1 2 100 6 1657447 1674823 AGGAGAAGCACATCATGCA 59 1674886 1674905 GAAGGACCGATATCCGTAGG 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460 3 1 2 83 12 2555095 2555113 AAGCAGGAGAATCGTGAGG 60 2553386 2555049 GATCACAATAATGGGCCTGG 59 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022543 3 1 2 81 4 71664399 71664419 ACAATGCTAACTGTCCAAGTC 59 71664462 71664564 AGGGATCCAATAGCACCTC 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 3 2 2 84 4 7383683 7383701 AGGTGTTGGACATGTACCC 59 7383746 7384020 ATCATGTTGGTATCTCGAAGGT 59 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 1 2 2 103 1 177569844 177569863 CATCTTATCAGACGAAGGCA 58 177651613 177654175 GACTAGACACCTGCTTCCT 58 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000068493 3 1 2 121 10 56650354 56650676 TGTGTCCCTCATACGACAC 59 56650760 56650779 CCAGCCTCAATGAACTTGTG 60 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332 3 1 2 86 8 64496170 64496188 CTGACTGCATCATGCTGTC 59 64496238 64498960 CCTCTCGAGCTATCAGGTG 59 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000056818 2 1 2 80 8 96050146 96050166 GCATATGAGCATGTTCTTTCC 58 96049907 96050105 GAGTTGCCTGAAATACTCGT 58 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 1 3 3 80 11 53528276 53529908 GCATCATGGCTTGTGAACC 60 53528214 53528235 GTCCAAGTAATTCTGCTAGAGC 59 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 2 3 3 81 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528277 53529909 GTTCACAAGCCATGATGCA 59 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 2 3 3 81 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528277 53529909 GTTCACAAGCCATGATGCA 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 1 2 2 81 3 44081639 44084950 TTTCCAAGAAGGGCATCCA 59 44081576 44081600 GACAATTCTTTCCTTCTGTCTACTC 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 3 2 2 80 4 61427660 61430236 CAACCTAAACCTATCCCACTG 58 61430276 61430296 GAAAGATTCAACTTCTGCAGG 58 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000073048 1 1 2 80 9 10164921 10164940 TGTGCTTTGGTATACAACCA 58 10164771 10164880 TGTGGTCCATGTGATATTGTC 58 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054 2 1 2 80 5 33603247 33637907 GAAGAAGATAAACAGAGACTCTGG 59 33637942 33637964 TCTATCCTCATGTATCTTGCCAG 60 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000065753 3 1 2 80 7 145088598 145088737 AAGACTATGCTGACTCCATCG 60 145088777 145088797 TCACTTTGATGTGTCTTCGGA 60 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000007958 2 1 2 133 7 115968059 115969178 ACTTGCTATGGCCTTACGG 60 115967552 115967963 AAGGAAACACTATCTCCCGG 59 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000018014 2 1 2 86 9 65340396 65342513 GAGGACCTTAGAGTCTCCAG 58 65342562 65342580 TAAAGGTCGGCCTCTACTC 58 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 1 1 2 235 5 116963696 116963714 CAAGGAAAGAAATGGTGCG 58 116965068 116965089 GTAGACTTTACTAGCCATCGAC 58 NA DesignNoJunction Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219 1 1 2 80 19 30880205 30880223 CAATGACAACGTCCCTTCC 59 30880267 30880287 ACCATTTGCTGCTGAAAGC 60 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000010789 1 1 2 137 5 24489262 24491814 TGTGTTGAACATGCTGCTG 59 24488895 24489165 CTAATTGCCCATCTGTTGTAGAG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 2 2 5 85 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729170 19730710 TGGTTATGCAAATCGCTCC 59 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785 3 1 2 81 1 222707135 222707154 TTCCAGCCTTACCAAGACTG 60 222686579 222707092 AATCAGATCATGCACTGGGA 59 NA Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 3 2 2 84 7 70584140 70584159 GTATGAGGATCTGCAGGAGG 60 70584203 70584526 TGATTCTTCCTCTTCGTTTCCT 60 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 1 2 3 80 20 2089439 2092245 GTATCAACTGCAAGTTTCAGG 58 2092287 2092305 CAAGAGGAGGAAAGGACTG 57 NA InUTR Rattus norvegicus 81 Ptrh2 ENSRNOG00000004288 ENSRNOT00000005661 3 1 1 130 10 74002172 74009360 AGAAGCTTCAGATGCTTTCC 58 74009453 74009471 GAAGATTCCAAGGTGGCTC 58 NA InUTR Rattus norvegicus 81 Tpk1 ENSRNOG00000029922 ENSRNOT00000048203 3 1 1 80 4 72958492 73004349 GTACTACACCAAGAAGGGCT 59 72958431 72958450 AGCACTTGAAGACACTTGGT 60 NA Rattus norvegicus 81 Pttg1ip ENSRNOG00000001223 ENSRNOT00000001638 2 1 1 87 20 11763523 11763541 TGGGTGATGTTCCTCAGTG 59 11758934 11763472 TGTACTCAGAGCAACCCAC 59 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 3 2 2 80 13 98453280 98453492 CTCTACATTCAGGTCATCCG 58 98453219 98453240 GAGGAACTTCATCTCTATGGAC 58 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770 3 1 3 80 X 36971425 36974119 GTCACCATCTGCTGAATCG 59 36969059 36969078 GACAATACTTCGGAAGCAGC 59 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 3 2 2 82 19 25789029 25789047 ACAGATGAGCAGTACCGTC 59 25788885 25788984 TCCACCTTCTCAACTGTCTG 59 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 1 2 2 80 1 211381612 211383129 CATTGATGAGCTTTCTAAGACCC 60 211383820 211383841 CGATACCTCAACAGCTTATCAC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634 3 1 4 110 20 2058450 2059515 CTATAACCAGAGCGATAAAGATCC 59 2059584 2059602 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000042754 1 1 2 83 11 57457813 57460553 GTTCAGAGCACTTTAGAAGCC 59 57460598 57460616 TCTTTCGAGGCAGAGTGTC 60 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 2 3 3 80 5 151051031 151052226 CATTTGACAGCCATGAGGAG 59 151050970 151050990 TAAGTTCCAGGTCTTGCTCAG 60 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 2 2 2 80 7 116689504 116689523 GGAGGAGAATAAGCAAGTGG 58 116688975 116689462 CTCTTACACCATGCAATGCT 59 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000088802 3 1 2 118 X 37336868 37337313 TATCGTTGGACCTCACGTG 60 37337393 37338284 ATATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000077573 3 1 3 88 3 72433316 72433335 TACAAAGGTGAAAGGCTTCG 59 72432620 72433267 GGTACTTCTCTTCATTCTGGG 58 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 2 2 3 110 3 72433271 72433289 GTGTCGGATTATGTGACCC 58 72432624 72432842 CTTCTCTTCATTCTCTGGACAG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042251 3 1 6 82 6 4315609 4315630 ACCTTCTTCATTGAGATTGGAG 58 4303099 4311882 TCGTACTCCTCTGTTAATGTG 57 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 2 2 4 80 1 82338653 82338673 GACTATCAGTGTGAGATCTCC 57 82332693 82338613 TGTTGGATCAGGTATTACGTC 58 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683 2 1 2 80 2 188523980 188524123 GAAACTACTCCCTATGCTAATCCA 60 188523923 188523941 TCTGCATACCACTTTCGGG 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073,ENSRNOT00000040457,ENSRNOT00000020407 2 3 4 81 3 8452780 8452798 GGAGTAACGAGTCTCACAC 57 8452841 8454014 GCTTATGAGATTTCGTCACAG 57 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 2 2 2 80 1 219411877 219412178 GGTTATGGCAAGGTGTTCC 59 219411815 219411836 CTTTCTCAAGACTTTCATGGCA 59 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 1 2 2 71 2 61692290 61692310 GAAGGAGAACAACCAAATCTG 57 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 1 2 2 71 2 61692290 61692310 GAAGGAGAACAACCAAATCTG 57 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 3 2 2 72 2 61692290 61692311 TGAAGGAGAACAACCAAATCTG 59 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000083851 1 1 2 80 20 12075254 12075272 TGTACATCAGCACCTCACC 59 12075316 12076502 GTCTATCAGCCGGTTCCTC 60 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 2 2 2 80 15 55067616 55067634 CTGTCTTCCGAGCTTTCCT 59 55067676 55069047 GATCTAGCAATCCTACTGCCT 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000056694 1 1 5 115 12 52397971 52398096 TTTACTTCGTGTGGGTTGC 59 52398175 52398193 GGTGATGATGGAGCTCTCC 60 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000084535 2 1 2 97 10 63327681 63332247 TGAGTCAAAGGTTTGTGCT 58 63332307 63332326 GATTCCAGTGGTCTTATGCT 57 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000045686 2 1 4 86 5 115095226 115184022 CTCAATCCAGCCGTTTGTG 60 115095158 115095176 GGCAGTCCAGTTATGACCA 59 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786 3 1 4 83 5 115167945 115167963 GCTCTTAGCTGGCTACCTC 60 115167878 115167899 TGGAACAAGTTCCCAAATGG 59 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000058163 3 1 4 81 5 115204774 115204792 GGCTGGATTTAACTTGCCA 58 115201689 115203022 CGTAACCAACCACTGTGAG 59 NA Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 3 2 2 80 17 10469491 10469588 AGAACTATGAGGCTCTCCTG 58 10469631 10469649 GCTCTATGTCTGCTTTGGT 58 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 2 2 3 80 1 101691073 101691091 CAGAGGAGGAATTGAAGCC 58 101691133 101692358 ACTTCTCATCCTTCTGTTCCT 59 NA Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 1 1 1 60 X 67564127 67564149 AATGTAGTGGGAAGGTAAGAAGG 60 67564332 67564352 GTTCTCTTGGCCTTCTTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000043971 2 1 2 116 19 25051388 25051407 TAATAACCGAACCCAGTGTG 58 25051485 25058496 CACACGAAGATGTAAGGGAC 58 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000043971 3 1 2 116 19 25051389 25051407 AATAACCGAACCCAGTGTG 58 25051487 25058497 GCACACGAAGATGTAAGGG 59 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091 2 1 2 80 3 107564482 107565840 CAGTCAAATCGAGCAGTGAG 59 107564421 107564441 CTGACCATCCAATACAAAGCT 58 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216 1 1 2 99 17 47389994 47390012 ATCATGTGTTATGAGCGGC 58 47299179 47386893 GATGGACATCTGTGGACCT 59 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 2 3 3 83 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504993 47505011 TGTAGCGAATTTCACAGCG 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000038203 1 1 2 94 12 13904536 13904554 TCCTCCTCATCTTCCTCCT 59 13904612 13905379 GAAGAGTCCTCGTCTGTGG 60 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 1 2 2 80 14 6674564 6675268 TTTCTGATGAACAGTATCCCGA 59 6674505 6674523 TGATAGCCTCATCGGACTC 58 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 1 2 2 80 5 36586200 36596524 GATTTAGCAGGTTTCTGAAGGT 59 36596563 36596583 AAGCGTCATTAAGAAAGTGGC 60 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 1 2 2 64 6 51017103 51017121 AAACTACCATGGTGAGCCA 59 51015549 51015567 GGAGCAGTTGGTATTTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283 1 1 2 80 10 90256639 90257008 AAGGAGTACGAGGAGATTATGC 60 90256580 90256600 AGACTTGGTGATACCTTCCTC 59 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467 2 1 2 80 18 36850667 36851676 ACCAAGACCGGTGTATTACC 60 36851719 36851737 AGGTGAAGCTGCAATAGCA 60 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000086979 2 1 2 80 18 36846542 36846560 CTTTCCCACCAGTAATGGT 57 36846603 36851681 TTCCTGGTAATACACCTGGA 58 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 2 2 2 82 7 70617610 70617710 AGAACTTCCAGTCGGTGTG 60 70617756 70617774 GGTCTCTTTGCGATTAGCC 59 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833 2 1 2 80 7 70613188 70613208 TGTGACAGAGGAATCAGTCTC 59 70613250 70613504 AGCTTTGTTCCAGGAGTCC 60 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 1 2 5 80 1 80524477 80524496 CTATGGTGTGGACAAGAAGC 59 80524300 80524436 TCAATTCCATGTGGATCAGAG 58 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 3 3 3 80 18 39476825 39476846 GAAGTGTGAAGATGGAACAGAG 59 39476884 39478985 ACATGATATTCTGGGTCTTTGC 59 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 2 2 3 80 13 50485664 50488200 AGTTTGCAGGTGTGAATGAG 59 50485603 50485622 CCAGATAATAGCGTAGCCAC 58 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075125 3 1 5 80 15 10281954 10282289 CGTCGTGGTGTATACAAGG 58 10281892 10281912 GTAATCAGAAATCAGTGCTGG 57 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326 3 1 2 80 9 71255039 71255058 ATTCAGTCTCCACAAGTCCA 59 71255802 71262310 AGTTGAAATCTGAGTTCCGGA 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542 3 1 3 94 8 1560196 1560215 GAATGAACAAGGCCTCTTGG 59 1552099 1560139 TCGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215 3 1 2 80 1 214049016 214049035 TGGGATTGAACTTCTATGGC 58 214040418 214048973 TCTGTATGTACCTGGCTCC 58 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000077532 3 1 2 84 9 12643230 12643918 TACCTCCGGCTTATACAACTG 59 12643963 12643982 TGAACTGAGCATTCATTGGG 59 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 1 2 3 80 6 76684928 76684948 CACCAGAGTATTTGGAACCAC 59 76684985 76685751 GTTCTCTATAGATTCCTGCTACCT 59 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000051028 2 1 2 117 5 99468332 99473964 AAATTACTTACGTGCCTGCAG 59 99465731 99468255 TCTGGAATATCTCTGCCAGTG 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 3 2 2 80 4 179500993 179512375 GATCCTACGATAGAGGACTCCT 60 179500934 179500953 TGCTGTGTCGAGAATATCCA 59 NA Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076 3 1 2 88 10 25842017 25847791 CATGGAACAGGAGGAAGTG 58 25841947 25841966 ACTCTTTGTAAACCGCTCTG 58 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 2 1 2 95 2 235321270 235322661 TGGTGTTCATCTGAACATTGG 59 235322718 235322736 CAGTCGTTCTTGCCTTTCC 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 2 2 4 98 14 22379888 22529789 GGTTCTTTGGAAATTTGATGGC 59 22529848 22532487 TTTGGATGACCAAGGAGGT 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 1 3 3 82 17 43667356 43667374 GTGGGATCACCATTTGTGC 60 43667419 43668790 CATGGTTCCTCCTGAAACCT 60 NA Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 2 2 2 80 2 188452439 188452459 CCTCAAGGAGATGATCAAAGC 59 188452499 188452660 GATTCTGCATGGTACTCATGG 59 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332 3 1 2 100 12 2239660 2239878 GAAGTCCCAGGCTCTTCAG 60 2239387 2239405 CGTTCAGGTTCTGGGAGAG 60 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 1 2 2 168 10 29177398 29179206 TCCTGCTGGTAGCATATGAC 59 29179337 29179355 CTCTGGAACTGGGCTAGTG 60 NA InUTR Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399,ENSRNOT00000014718 1 2 3 80 4 7129120 7129883 GAACTCAAGACTTTCAAGCGT 59 7129924 7129943 GATGATATTGGTGCAGACCC 59 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000071977 2 1 2 86 6 42616523 42616541 GAGAATGGCACAGAGTGTG 59 42609401 42616474 GTCAGGTCAACTCCATTAGC 58 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 1 1 1 66 10 104036720 104036738 GTTCCAGGAGACTGAGAGC 60 104036858 104036876 ATAAGCGAAGTTGGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 2 2 2 143 13 50532092 50532110 TTCCAGAATGATCTCGCTG 57 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 1 2 3 90 1 197549471 197549489 AAACCTTCTACCTCCTGCA 58 197549110 197549417 ACATGAGACCTCTCATCGA 58 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 3 2 2 80 8 114933137 114933155 TTGTTCTCTTCCTGCTTCG 58 114932432 114933095 AGAGTAAATTTCACAGCCTGG 58 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000030760 3 1 2 82 10 39690731 39692200 AATGGTGCAGTCTGTTGTC 58 39692246 39692264 TCATGTCGTCTGAGAGGAG 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000035976 3 1 5 101 5 101906853 101906871 AGGAATGACTTCACCCTGC 60 101906936 101909703 TACATTCCACTGGCATGCT 59 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000037446 3 1 2 80 4 7159304 7159325 GATTCTACCTTTGATACCAGCG 59 7159365 7159525 CAGAGACCAGAGTCTCAGAG 59 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 2 2 2 80 8 68444763 68454429 ATCAATAACAGCCTCCTTTCC 58 68444703 68444723 TTCTGTTTCTGTTGAGACTCC 58 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324 1 1 3 80 17 59697974 59714652 GTTCACAGTCAAATTTGCCTC 58 59714693 59714712 CTCGAGTCTTCCTTGTTTCC 58 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000085022 1 1 2 102 8 49258273 49264833 AAACAGCAGTCTGGTAGTG 57 49258189 49258207 TATCTGAGTCATCTGGGCT 57 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 2 2 2 80 4 8141890 8143148 GGGATATGCAAGGGAAGAG 57 8143192 8143210 TTTCATCCAAGGCTGTCTC 58 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533,ENSRNOT00000082876 1 2 4 99 3 112242572 112251001 AGGCCAAAGGAAATTTGTGAG 60 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000013851 3 1 2 93 1 157646327 157654760 TTCACTCAGTTACAGATCTGG 57 157654815 157654833 TAAGGATCAAGGCATTGGC 58 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066 3 1 2 80 1 157649679 157654759 GTGAGAAAGTGAAGTTACAGATCTG 60 157654796 157654815 CGCTTCGGTAGTAACTTTGG 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000039652 2 1 4 83 2 8939052 8991007 TTCAATAGTCTGCAGGGACTC 60 8938989 8939007 ATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000089460 2 1 2 80 10 16009601 16009622 AACTATTCATACCCAGGATCCG 60 15998609 16000181 CAATGAAGACTGACCTCTCCT 59 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082 3 1 2 82 4 7111908 7112348 AAGAAGGTGCTCAGGACTC 59 7111844 7111862 GCTCGAGAAGTCAGGACAG 60 NA Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 3 2 2 81 1 219363605 219364108 ATCGAGATGCTGAAGGTGG 60 219363542 219363560 CTGCCTTTGCTTTCTCCTC 59 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000039354 1 1 2 145 19 25834677 25834695 CATCATTCAGCAGTCGAGC 59 25826953 25834568 CCTGTCGTTGTGAATGCTG 60 NA Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 1 1 1 66 10 13073685 13073703 TCCTTGCCCTGGATATGTG 59 13073523 13073541 CAGTGGATGATGGGTAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073 2 1 2 80 14 81380649 81383179 CCAAGTCGAAGACTAAGTGGA 60 81380589 81380610 TCAATGGAACAAACAGGTTAGG 59 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 1 2 2 80 15 36940199 36942780 ACTTGGAGACCCTTTCAAGAG 60 36942821 36942840 AAACAGGTTCCAGTAGAGCA 59 NA Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 1 1 1 87 12 2544577 2544595 GGACAGCCATGTGTTTGTG 60 2544427 2544445 AGAAGGCGTTACTGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000050535 3 1 3 80 11 71119620 71120912 AAAGAGAACACGTCAATGGC 59 71119559 71119578 TGTACAGCTCCAGGATTGTC 60 NA Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 2 1 1 89 15 62521317 62521335 CTGTGAAGGCTCAATTCCC 59 62531546 62531564 GGTCAACCTCCATGAAACG 59 NA DesignNoJunction Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000065483 2 1 3 80 18 57755779 57780268 CACTCATGTGCTAAGGACC 58 57780311 57780330 CAATGCTGACAGGAATAGCA 58 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464 1 1 2 80 9 14499175 14499193 TGGGAATGAAGAGTGCTCG 60 14498303 14499133 TATTTGGTTTCCAAGCCATCC 59 NA Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 2 1 1 60 7 116633668 116633689 CCTTCTGTATCACAGTCATCTC 58 116633824 116633842 GAGTAGGTCGTCAGGACAC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 3 2 2 80 4 78451463 78451481 AGATTGTTGTGTCTGTGGC 58 78451045 78451421 CTTCATCATTCAAGACCTGGG 59 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551 1 1 4 86 2 78250746 78251288 TGAAAGCAGTACTGTTTGCT 58 78251336 78251355 GAATGGACTTGACTTTGCTG 57 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 1 1 1 60 14 78973866 78973884 AAGAGCGAGTCTTCGTGAG 60 78974156 78974175 CCATCACTCAACCAGAATCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000009552 3 1 2 81 3 92927037 92927056 CTGGTGTTCAGATTTCACGT 59 92924104 92926994 TGAGTGCATCTTCATGACTG 58 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240 3 1 3 80 7 107479346 107479364 GAACAGGTTCCCTGAAGTG 58 107479408 107480092 AACTCCAGTCCTGTCTCAG 58 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 1 3 3 80 20 27176774 27176985 CAGAGATGGAATGGATAATCAAGG 59 27177024 27177042 CCATAGCCTCCACTGTAGC 60 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718 2 1 2 80 5 99009513 99009531 AACCTGGACACTTTGAAGG 58 99009575 99177726 GAGTTTGCACCTACTGGAG 58 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 1 1 4 133 5 78378402 78378420 TTCTTTAGCAGTCTGCGGA 59 78373769 78373787 GAAAGTAGCCACTGTGCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000082474 1 1 2 80 3 163969831 163970021 CATGGAGATTTGGGACAGG 58 163969769 163969787 CACCACTGTGTCGTAAGAG 58 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083568 2 1 2 152 10 36291412 36291430 CGCTGTATTCAACCTCTGC 59 36291546 36293506 ACAGGTTACCGAACACTGG 60 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135 2 1 3 80 2 177950512 177952223 TGAAATGATCGTGGTGGAC 58 177950450 177950469 CTTCTTCGAGACTGTCTGTG 58 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 3 2 2 80 18 58415750 58418512 CACTGCAGATCTTACTTGGAC 59 58415690 58415710 AATGAAGATGATGGTGAGGAC 58 NA Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 2 2 2 80 13 98070001 98070022 GTGTTCTTTGCCTTTATGACCT 59 98068345 98069960 GCTCGATAGCTGTTACCCT 59 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617 1 1 2 80 3 9434568 9448096 CCTAGAAGAAGCCCTGCAG 60 9434506 9434524 TTGGAGTTCCATCGAGCTG 60 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897 3 1 2 80 10 65768740 65768810 CAGGTTTGATGGAGGTGAG 58 65768853 65768872 ACATCTTGGATGAGTTTGGG 58 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 3 2 2 89 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322892 214322910 CATCAGGAGTGTGGCTAGG 60 NA InUTR Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 2 7 7 84 15 5464664 5508850 TTTGAACTACAGGCTGAGTG 58 5464599 5464620 GTTGGTCATCTTATGCATATCC 57 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 3 2 3 83 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 2 2 2 80 1 78104235 78104254 GACTATGATGCCTTTGCTCC 59 78102138 78104193 ACTCTTCATCTGAAGCACCA 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000072536 1 1 2 80 16 20806738 20806756 AGATGCTTCGAGAACTCCA 58 20806257 20806694 TGATCTCCTTGACCTGCTG 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 2 3 4 81 7 140416206 140416225 TTCACAGTATGGGACGTAGG 59 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402 1 2 4 95 3 3168422 3178672 AGTATCTGACAGAAACCACAC 58 3178729 3178747 ATCTGGACCTCTAAGTCCC 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 1 4 4 80 12 19760582 19760961 AGTGGAGCAACAGATTCCT 59 19760520 19760538 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 1 2 2 81 12 11407277 11500483 ATCCGTCTGACAGTATTGTG 58 11501752 11501770 CAACAATCTTGGCAAAGGG 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 2 2 2 80 17 66243017 66244879 TCTTACGATATGCCCAGACTC 59 66242957 66242976 CTTCAATCGAGCCATTCCTC 59 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 3 2 2 80 18 40096573 40096591 TCAGGAAGTGCTGAAGGAG 59 40096313 40096534 GTAGCTTTCTGTATTCTGAGATGG 59 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496 2 1 2 80 2 187361407 187362221 TTTGTCAACGATCGATACAGG 59 187361347 187361366 ATCTGACCACAGGAAGTCAC 60 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 2 2 2 81 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109743 143109997 CTTTATCTCCTCACACTTGGT 58 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191 3 1 2 95 4 85561762 85561780 GACCATTCATTGGGAGTGC 59 85561839 85569095 GCCTAGGAATCTTCATGCG 59 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863 1 1 2 80 7 143416228 143416247 AAGTTCAGAGCCAATACGAG 58 143415896 143416187 GTTCTTCATACTTGCTGTGGT 59 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000031173 3 1 2 60 1 84640190 84640208 TACAGTCACCTCGTCACAG 59 84640235 84640254 AGTGTATGTGACACATCACC 58 NA DesignNoJunction Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 3 7 8 62 20 1960450 1960468 CTTGCACCGAACCATTGAG 60 1959861 1959881 ATGGAGACATCGATGTCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 2 5 8 83 20 1963408 1966088 AAGTGGATTGGAGGGTCTC 59 1963343 1963366 GGAGATAAAGAGTTTCTGAGACAG 59 NA Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458 2 1 2 89 1 47626234 47629317 ATTAAAGACGTGGAGCCAG 58 47629370 47629388 CTCAGCTCTGTAAACAGGG 58 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 2 2 2 98 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879513 142879532 TCATCCACGCCACTAATCTC 60 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690 1 1 2 80 10 65673458 65675863 CCTCTGAGGTCTGCATAGAG 59 65673397 65673415 GTTCTACAGCAATGGCCAC 59 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 1 2 2 80 5 139711372 139711392 TTTCCGAGTACAAGAACTACC 58 139708847 139711331 TCTGCACTGATCATCTTCAC 58 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 2 2 2 80 10 65451257 65451350 GGATCTGAGTACTCCTGCTC 59 65451388 65451411 CAATACTCAGCCTTAATCTCTTGG 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 2 3 3 108 13 48801362 48804630 ATACGCTCTTCCAGTTCCC 59 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000051927 3 1 2 83 1 48327873 48327891 CTTGTGCTGTTGCTACCTG 59 48318474 48327831 TTTCCTAGGTCTCTGCATATTCTC 60 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000056436 2 1 3 163 2 195876058 195887688 CATGAAGAGATTATTAAGGTGGACC 60 195870857 195870875 TCTGCTTCTCGCTGATACC 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 1 3 3 89 7 99155552 99171405 GGAATATGGTGTGATCTTTGC 57 99171456 99171474 TTTCCCATCCCAAAGTCTC 57 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 3 2 2 82 1 80497929 80498800 TTAGCCCTCCCAGTTATGC 59 80496566 80496584 GGACTCGGAACTGGATTCC 60 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 3 2 2 80 20 13620667 13620686 CTACCTAAAGCTGCTTCCCA 60 13618495 13620624 CATGCCACTTGATCTGGGA 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000085322 3 1 4 80 15 8915970 8915988 ACAGACACCAGTTCTACCT 58 8914481 8915928 TCTTCTAAAGAAACCCTCAGG 57 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 3 2 4 92 15 8920803 8920822 TAGACAAGGATGAGCTCTGC 59 8914486 8920748 TAAAGAAACCCTTGCAGCC 58 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 3 2 2 111 17 5436598 5436618 TGTGAAGTCGTGAACTTACCA 60 5429959 5432558 CGAGGAAAGTAGTTTGTAACAGAG 60 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000065584 1 1 2 80 10 37051139 37051157 AACAGCAGTATGGCTCTGG 60 37049990 37051098 AATTTGTACTACCCTGACCTCC 60 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000091273 1 1 2 95 3 153441419 153441437 TTCCAGACCCTGAAGTACC 58 153441493 153441611 GTGAATCATTCTCTTAACTGCC 58 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 2 2 3 80 13 77639577 77639595 GTGAATCTCGTAGCTGTCC 58 77639638 77640780 TTTGGGAGGATCAATTCCTG 58 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000003946 3 1 2 80 X 70447723 70447743 TCCAGATCACAGATGTTGTCC 60 70447783 70448178 CTACTGTCTCTGTGAACTCCC 60 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 3 2 2 80 5 151198709 151198727 AAATCAGACGTGTGGTCCT 59 151198769 151198876 GTTGTTCATACCTGGGTATGG 59 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890 2 1 3 81 18 60496834 60572939 AAGCATATTGCCAGTGACC 58 60572984 60573002 TAGTCTGAACCAGAGCGAG 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572 2 1 3 103 X 104895076 104895769 GAGTTCAAGTGCCAATGCA 59 104895836 104895854 ATCATTGGGAGCATCACCT 59 NA Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 1 2 2 80 5 161773890 161794870 AGGACTTCAGCTACAGTCTC 59 161773829 161773847 CCTTTCTGCATTGTCTGGT 58 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792 1 1 3 80 6 108511886 108511904 GCTCCTTCAACTGTCTGTG 59 108507371 108511845 CCTCACACTCATCAATATCCAC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000077458 2 1 3 83 6 108502109 108502130 AACTTCAGCCCACTATATCCC 59 108501740 108501758 TCAGGATGCCACATTCCTC 60 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687 1 1 2 84 15 12873163 12873181 ACTCGTTACTGGGCATCAG 60 12872627 12873118 CCTGAAACTGGTACATAAGTGC 59 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 3 2 2 80 7 27089364 27089385 CTTCTCAACTAGGGATTTCTGC 59 27089425 27091024 TGCTGTCCTCAGTATCATCG 59 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 2 2 2 80 15 18664542 18675302 ATCTATTATTGGTACTGGCGG 58 18664482 18664503 GGAGTAACAGAACTGATAGTCC 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000071939 1 1 2 80 20 9323547 9324826 CATGGTCGATCCCAATCTG 58 9326107 9326127 ATGCAGAGAACTGAATTCAGG 58 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 2 2 2 80 7 143521607 143521625 AAAGGTCGCCTACAGTCAG 59 143520633 143521567 GTTGATCTCTTCCTCATACTTGG 59 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205 2 1 2 170 5 173291665 173291755 GGAAGGATGTGAACATGGTG 59 173291957 173292139 CCTTCCTGAACTCTTTATCCAG 58 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000004384 1 1 3 101 10 3339126 3342506 CTTCTACGTCGGTATGAGCA 59 3356718 3356736 GGCCAGTACATCAGACCAG 60 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 2 2 2 81 6 66984471 67083531 TTTATCCAGGTACTACTGAGAGG 59 66984412 66984433 TCTGCAATGAATCCATGAACTG 59 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000006963 1 1 2 124 3 44464950 44483850 GTATGGAAGATGAGGAGCCC 60 44464845 44464863 ATCATTGACGCTCAGGGAG 60 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000081825 3 1 2 96 5 48314583 48321202 CATGTCTGAGGTTTCTGGG 58 48321262 48324726 ATGGTGAAGTCCATGTCCA 59 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000017252 2 1 3 80 2 243739959 243739978 AATTTGTGACTGGCAATCTG 57 243740021 243740646 CAGTTCGAATGCTGTTTCC 57 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 1 2 2 80 3 2937959 2938580 CTTTGTACCTGAACAGGTGAC 59 2937899 2937917 TCTCCTTCCTCAACGACAG 59 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 1 2 2 80 7 143464074 143466097 CAAACCAAGTACCAAGAGCTG 60 143464014 143464034 CTCTGAGATCTCCATCTTGCT 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078 2 1 2 112 18 63366539 63366558 AATAATCTGTTGCCGTGGAG 58 63360456 63366464 AAGAGGCACATTCACAAGC 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 1 2 3 80 13 76550384 76554139 GAGTTGTATATGACAGGACCC 58 76550324 76550343 CCTTGTACACATACTGACGG 58 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210 1 1 3 80 13 76394431 76394449 TCAATAACCGGGCCTACTG 59 76392567 76394390 CAAATGGAATGACCTTCTTGGA 59 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000010675 3 1 3 138 15 12570127 12578673 ACTGACGACGAAGTCATCC 60 12578774 12579450 GGTACTGGCTGTATCCTTCC 60 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000089525 3 1 3 100 3 95715314 95716109 GAATTCTGCAGACCCATGC 59 95716268 95716286 AGTCTCGTAATACCTGCCC 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000036993 3 1 3 96 2 243665736 243666850 CGAATAAAGATGGTGGCCA 58 243666910 243666928 CATGGCCCATAATCATGGG 58 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000083682 1 1 3 80 2 243559814 243559832 CAAAGCCTCTCCGTTAACC 59 243559875 243560774 TTTACTCTTAAACCCGCCGA 60 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287 1 1 2 85 20 27720965 27728772 AACTACAGGTTGGTGAAAGAC 58 27720900 27720918 AAGAAGTCATACGCAGTGG 58 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 1 2 2 86 10 46314837 46327720 ATCAAATGCATGGACAAGGAC 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 3 2 2 87 10 46314837 46327719 ATCAAATGCATGGACAAGGA 58 46327769 46327787 CTATGAGCTTCCGCATCTC 58 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 3 3 3 80 1 192467139 192467160 GAATGACTTCATGGGATCTCTG 59 192467199 192477527 CTTAGTAACTTGAACCAGCCA 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025723 1 1 5 98 1 100086594 100088320 ACAGATTGATGCTGCACCT 60 100088381 100088400 GTTGTACCAATGACAGCCAC 60 NA Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 1 2 2 80 3 111826709 111826727 GCACAGTCAAGAACAGCAG 60 111826769 111826911 CCATAACATTCTTGAGCTGCC 60 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 2 2 2 80 18 56840134 56840156 CATACTCTTTCCAAGAAGACCAC 59 56839389 56840094 CTTGTCTTCTGTCCTGGGT 59 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000044161 1 1 2 104 13 112076760 112078007 AGTGGAGGGAACTTCAAGTC 59 112076675 112076696 CTGGGATCACATTATGAGACAC 59 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000044161 2 1 2 106 13 112076760 112078007 AGTGGAGGGAACTTCAAGTC 59 112076673 112076694 TCCTGGGATCACATTATGAGAC 60 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000078020 2 1 2 82 3 3399612 3402033 TGGAAGTTAGTACCCGTCC 58 3399548 3399566 ATCAAGTCCTCCAACAACG 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000035113 3 1 4 80 13 79050535 79050558 GGGATATCATTTGTAGAGAAGGTG 59 79050595 79060717 ATGAGCTATGTAAACTCGCCA 60 NA Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 3 1 1 60 3 44830872 44830892 CACACGATGTGTACCTATGAC 59 44832923 44832941 AGAAACAACATAGCGCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008 1 2 3 80 3 113420703 113421582 CAAGAATTGGCAGACTGGTG 60 113420642 113420664 ATACTGTAGAATCCTAGTGTGGC 60 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 3 2 2 80 12 12885662 12885680 CGCTTCATCACCATGAACC 59 12884528 12885624 GATACTTTCATACAAGTTCCTCAGC 60 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423 3 1 2 110 4 31534282 31537248 GCAACATGCCAATCTTTCC 58 31539049 31539067 ATCAACACCATCTCTGCCT 59 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 2 2 2 80 6 76069286 76069307 GGCTACATCAGACAAGAATAGG 59 76065978 76069247 AGTTCTCTAAGTCCGATTCCC 59 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 3 2 2 80 6 76063467 76063486 ACCATGACCAATGTCTTCCT 59 76059980 76063429 CAGGTAGGTCTTATAGTCCATCTC 60 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 2 4 4 81 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238104 122238123 CAATCAGCTCTGTCTTGGTG 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000088814,ENSRNOT00000078345 3 2 4 114 7 122338016 122338034 CTGTTGCCAATGAACTGCA 59 122264230 122337938 AACTGCAGCACATTCTTCC 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 1 2 4 82 20 3119765 3119783 CTACTTAGAGGGCCCATGC 60 3119828 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076272 3 1 4 144 13 78431958 78443055 TGAAGCAGAAGAGGAACCTG 60 78431833 78431851 CACAGTCCAGCATGTTCAG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 1 2 2 60 12 2581174 2581192 AAAGGAACACTCTGAGCTC 57 2581300 2581318 GTGGGCCCTAAAGAATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000085175 3 1 2 177 14 92045815 92057227 TTTCCCTCCAGGCTTTCAG 60 92042439 92045677 GACTTTGACATCCTTTCTGAGC 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719 2 2 3 128 4 33640500 33640520 CAGTTCTTTGGATTAATGGGC 58 33642924 33646242 GCTTCTTTCATAAGCCACAG 57 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000078306 2 1 2 188 5 173340628 173344356 AGGGCAACTATCGATGAGG 59 173344911 173345154 CAGACATTCCGAAATGACGG 59 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 1 2 2 90 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952978 47958502 GGATTTGAGTGGTGCACTC 59 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 2 2 2 67 2 232129924 232129942 GCCACTGGAAGACTCTCAG 60 232135466 232135484 CGTCTCTTCTGTATCAGCG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 3 2 2 80 5 33177436 33177454 TGAATGGAAATCGGTCCAG 58 33176954 33177298 GTGAGTGATGTATCCCAGG 57 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000064266 3 1 2 102 5 172303383 172303412 CACAGTCCTCTTAATGCGC 59 172303561 172303579 GATTCATAGGGTGCATGGG 58 NA Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 1 2 2 80 4 157453344 157453582 ATCCCATGTTCCTGATGGAC 60 157453624 157453643 GGCTATATCCAAAGCCACCT 60 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 2 1 1 60 1 255801702 255801720 GATTAAGGCTTGGGACCTG 58 255801849 255801869 GTCCAGTCGTTTCAATAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671 2 1 2 84 12 2910720 2910738 TTACGGATGGAATGCCCTC 60 2910785 2911406 CCCTCTTCTATTAGGGCAGG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 3 4 6 116 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965718 33965737 AGATTCAGGACAGTGATGCC 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 1 4 6 114 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 3 4 6 116 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965718 33965737 AGATTCAGGACAGTGATGCC 60 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 2 3 3 80 18 56395287 56395306 AGATCATGAGTCATCTCGGA 58 56395349 56396611 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000046771 2 1 3 159 14 17549421 17551321 CTGATGTGAAACTCGCTAGG 59 17551442 17552986 GCATTGGTATCCTGTACCAC 59 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000079304,ENSRNOT00000046771 3 2 3 91 14 17555402 17555421 AATATCCCAAAGTCGACGTG 58 17555473 17555619 CCTAGAATTTCGAGCTATGCC 59 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249,ENSRNOT00000000474 3 2 2 80 1 167076959 167076977 AGGTGAAGGTCCTAGAGGA 59 167077018 167083467 TCTTATTCAGTTCTTCCACCTG 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000058007 1 1 4 94 8 70172090 70172108 GAAAGAGAAAGGCCGTGAC 59 70172166 70178257 TTCCACAAGTGCCTGAGAG 60 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 2 3 4 81 18 6777413 6777431 CTGATGTTACTGGTTCCGT 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000022574 3 3 4 84 5 152683515 152685792 GACGCAAGTCTCATGAAGC 59 152685840 152685858 TCAATGGCTTTCTGGAGCA 60 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848 2 1 2 85 X 135327991 135332362 GGGCAGGAATTTATTATGCCT 59 135327926 135327944 TGGTGACAGTCCTAATCCC 58 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454 1 1 2 80 1 219862124 219862143 TCACCACATTATTGAGCAGC 59 219861799 219862081 TAGGAGAACTGGAACGCTG 59 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203 2 1 2 112 11 81718354 81718372 TGAGGTCTTGAAGGAGGAG 58 81718009 81718279 GATATTCTCCCTCCTCCCTG 59 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 3 3 3 80 11 67635526 67635545 GGAACACTGACTTGAAGAGG 58 67635588 67637691 GTCTGTAAGACTGGGTTGG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 2 6 7 89 X 70645330 70646351 CTTTACAGCCATTGTACAGGG 59 70646401 70646420 CAAATGTAGTGCCCAGACTG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000088114 1 3 7 80 X 70601834 70602154 TTCTTGCGGTGAACAACAC 59 70602195 70602216 CCATGTCTGATGTGTTCTTGAG 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000080509 3 1 2 101 1 266381169 266401897 GAGTACAAGGATAAGGAAGCCT 59 266401959 266401977 ATAGTAGTGGCTGCAGCAC 60 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 3 3 3 80 15 23830043 23840163 GGTAGTGGTATGAAAGATGTTCC 59 23840202 23840221 AGTCATCTGTGAGAAGAGCG 60 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 3 2 2 80 9 10275287 10275306 TTACTGCAGGAGAGTGTCAC 60 10275349 10275618 ATCTAAGGTGGCCTCACAG 59 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 3 2 2 83 1 222862258 222862276 TTCCGCCCTATGTACAGTC 59 222862323 222869435 TCCTGGGATTTCACTTGGG 59 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 1 2 2 80 5 157751742 157751935 CAGGCAATAAGCCCTTCAC 59 157751680 157751698 TTGAGAGCAGGTACAGCAC 60 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430 2 1 2 80 1 101724669 101773160 GGATCAGAAAGCCAGAAGC 59 101724607 101724625 CTCTGGTGTATACATGCCG 58 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000068276 3 1 8 80 4 8214548 8215367 AAGAGTCAACAGGCATTTCG 59 8212547 8212568 AGACGAAGGATCAATTTCTGGT 60 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 1 3 8 80 4 8194328 8194475 AATCAAGAGGGATATGACCGA 59 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 3 3 8 80 4 8194329 8194476 CAATCAAGAGGGATATGACCG 58 8194269 8194287 AGGCCTAGCTCATTTAGGT 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000091318 2 1 4 80 15 898442 898460 AAGCTCCTGATGATAGCCA 58 900841 907083 CCCAGGGTTAATTAATATTCGC 57 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000066250 1 1 3 146 10 47065886 47095444 TCCTCTAGGAAGGGTATGC 58 47095554 47095572 AGCATTCCTCAGGTAAGCT 58 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000091561 1 1 6 86 17 77185128 77185149 CCTTCGTGGAGATAGGATGAC 60 77189042 77189060 GAGTCTGTCCTTGTGGGTC 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000006143 1 1 2 80 6 115609367 115609389 TGTTGATTCTGGACTCAGAGG 60 115609307 115609325 TGACACTGACTTCCTCCTG 59 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837 2 1 2 91 7 123101160 123101807 TGGTGTAGCTATCGGAAGAC 59 123100586 123100605 ATATGCGAACCAGGGTACAG 60 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530 1 1 2 80 1 82099605 82099623 CAATGCCATTCTCATCCCT 58 82098999 82099563 TGAGTTAAAGCTTGTGAGGAC 58 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 2 1 1 60 14 115386428 115386447 TGACCCTTGTTGAAGATCCT 59 115384903 115384922 CCGACTGGTAGTTTGTAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754 3 1 2 87 1 7371237 7371256 TGTGGAAGTCACAGATTCCC 60 7364148 7371187 CCTTATTGCTGCCTTGTCC 59 NA Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 2 2 2 80 8 48440269 48441148 ACCAACAGCTTTGTACCTG 58 48441192 48441210 CTTCCAGGCTGAAGTTGTG 59 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285,ENSRNOT00000091665 1 2 3 80 3 113302831 113303101 TCTGGCACTATGATGGAACTC 60 113302771 113302792 CATCTTCATCTTCTGCTTTGGG 60 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285 2 1 3 80 3 113288318 113288336 GAATCTTCAGGACTACGCC 58 113287550 113288275 ACAAACAAGAGCTCATCTCG 58 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000001437 3 1 2 90 12 13133211 13135878 GCAACAACTTCTGCAGAGG 60 13133139 13133157 GTCGTCTTCAGGATGGAGG 60 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 1 2 3 80 X 120958937 120958959 TCACTGTCCATGAAGTATAAGGG 60 120958996 120960427 GAGGTAAGTAAAGTCATGGCTG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000040762 1 1 10 80 7 117258794 117258812 GTCATGTTGTCAGTCTGGC 59 117253868 117258750 GGTCTCGTTCATCTTGCTC 58 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000077962 3 1 3 89 1 260536548 260536566 CAGTTGTAACCGGAACACC 59 260530953 260536496 AAAGAAGAGGCTGTGTCCTC 60 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 1 2 2 80 13 101013045 101013977 GCTCCATTGATGTCTCAACTG 59 101014017 101014037 TAACAGAGTATGCATGACCCT 59 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 3 2 2 90 17 80658554 80662341 CAAAGAGTTTAGCCTGCGG 59 80658482 80658503 GGATAATTAGCAGGGTAGTTGG 58 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324 2 1 2 80 6 111342128 111342147 AATCATTGAGTCCAGAGCCA 59 111339236 111342088 TCTATCTCCTTCAAAGCCTCTC 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000064613 1 1 5 80 8 73073909 73073929 AACGTTTGTTGACTACCAGAC 59 73065634 73073870 TGGAATCCAATCATTTCCTGAG 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 2 2 3 81 13 78928338 78928356 TTAGTCCCAAGTTCCTGGT 58 78925973 78928294 TCATCTACCAAGTCTCTGCA 58 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 1 2 2 80 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117910 164117928 CAATGGCATTACCACTCCC 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000674 1 1 3 85 20 31268796 31275525 CAGACAAGGATGTGTTCCA 57 31276852 31276872 GTTTAAAGGGTCCTTTGTAGC 57 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000674 2 1 3 85 20 31268796 31275526 CAGACAAGGATGTGTTCCAC 59 31276851 31276872 GTTTAAAGGGTCCTTTGTAGCA 59 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 2 2 2 100 4 178069483 178075006 GATACTGGGATCTCGTTGGA 59 178069402 178069420 CTGGGTACTTCTCCAGGTG 59 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000086571 1 1 2 82 14 21041840 21042204 TTTCAGTGAAACGGAGTCC 58 21042250 21042268 CTAACTTGGATGGGCTCAG 58 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 2 2 2 81 4 78514249 78514267 CATTCTATGGCTGAGCAGG 58 78514311 78514632 TTACAGCCAAAGGATACCTG 57 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 2 4 5 81 9 43834351 43834369 AGGAAGTATCCAGCCAGGA 60 43834414 43844719 TTCTTCCTGCCTTTCCCTC 59 NA Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 2 1 1 102 3 11101670 11101688 GATCGTTGGCTGGATTCAG 59 11088900 11088918 CTTTCCTTCCTGGAGATCG 57 NA DesignNoJunction Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000067141 2 1 3 80 19 53639728 53641822 AGATCCCAGTGATTATAGAGCG 59 53641861 53641881 GATCAGGTACAAGGAACTTGG 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000067141 3 1 3 80 19 53639726 53641821 CAAGATCCCAGTGATTATAGAGC 59 53641860 53641879 TCAGGTACAAGGAACTTGGT 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 3 2 2 113 1 143676182 143679890 ATTCCTGGACCATTGTTGG 58 143679967 143681989 CCGCATACACGTAGAACAG 58 NA Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 2 2 2 81 10 86518370 86518391 CCATCTTATAAGTGCCATTCTG 57 86518432 86519332 AAGGATTCACTTGAAAGGCT 58 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840 1 1 2 80 3 3777131 3777634 TGCTGAACATTACAAGAAGACG 59 3777675 3777693 AGACTGTAGCAAGCCTGTG 60 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 3 2 2 82 9 74047919 74047938 CCTTTCCGAATCCTTATGCC 59 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543 1 1 2 80 4 78768907 78768928 TCTCATTGGTAAAGAAGGAAGG 58 78767092 78768867 TCCTGCAATGGAGATATCGT 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 80 19 43266513 43266531 AAGTGATTGAGCAGATGGG 58 43266572 43267700 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657 3 1 2 80 19 55211037 55211058 ATGTTGTGACACCATTATCCAC 59 55211098 55221872 TGCAGTTTCCTTTAACCTGG 58 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546 2 1 2 121 3 171884885 171884903 TGACATTTGTGGTTACGCG 59 171878801 171884800 GTCAGCAGGGTCTACTGAC 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000089899 2 1 7 83 9 43740119 43740137 GAAAGGAAGGAGAGTGGGT 59 43740184 43743119 CACAGGGAACATCTTGCAC 59 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000066268 1 1 2 80 5 147268787 147270599 ATCAGTTGGTTTACCTGCTG 58 147270642 147270660 AGCCTGAGATCATCTTCCC 59 NA Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 1 2 2 112 1 90952694 90953342 AGCCTCAGGACAAGAAGAG 59 90952508 90952526 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000003494 2 1 2 88 X 71474775 71474794 TAAAGAAGCAGCTCTGGAGG 60 71474845 71478295 AATCAGGAGGCTTAGCCTG 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000035722 2 1 4 80 4 85694889 85701106 CATCTACTTCAGCTGCGTG 59 85701145 85701168 GATAGTTCTGACATCTTGCAAGAG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 3 5 6 80 20 3305443 3306024 GATGATGGAAGACAAATCTGACC 60 3306061 3306082 GCACAATGGTCTTCATATCGAC 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 2 2 6 119 20 3300785 3301071 AACAGTTAAGGACCACCCAG 60 3305191 3305209 TGGTGGAATCATTGGTCCC 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 3 2 6 119 20 3300786 3301071 ACAGTTAAGGACCACCCAG 59 3305192 3305210 GTGGTGGAATCATTGGTCC 59 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442 3 1 2 89 6 49844195 49844450 CAGATAACTGGGCCATTGAC 59 49844125 49844145 GATTTCTTAGGCAGCTGACAG 59 NA Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 1 2 2 80 1 214011915 214011934 GTTGTTGTCATGGTGACTGG 60 214011974 214012284 GATGAAGTACAAGCGTAACAGG 60 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000044810 3 1 2 81 4 21895320 21897302 ACCCACGTCTCTTCAACAG 60 21897346 21897365 ATGTTTGCAGTGTTCCACTG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000077784 2 1 7 80 5 165977092 165980685 TTTCATCGAGAAACTAGTACCC 58 165977033 165977051 GTCGTATCCCGGTATTCAG 57 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000079919,ENSRNOT00000080888 3 2 7 125 5 166038416 166038434 GATGTATGACAGGGCAGGT 59 166031447 166038327 TACACAAATGCCCTTCCCA 59 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000088123 1 1 2 109 1 69789168 69801088 CCAGGCCTCAAGGAATAGG 60 69801160 69804150 ATGCAATACCACCAATGTGG 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 2 2 3 147 9 12477292 12587077 ACAGTTCCTACCGCATCAG 60 12587188 12587206 CAGAACCTCTTTGCCTCCA 60 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 3 2 3 148 9 12477292 12587077 ACAGTTCCTACCGCATCAG 60 12587189 12587207 ACAGAACCTCTTTGCCTCC 60 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529 3 1 2 88 1 104576837 104696213 CGATACCCAGATCTACACGG 60 104696264 104696282 TCACATCTTGCTGGAGGTC 59 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000014733 3 1 2 88 4 147781981 147785027 GAGAGGAACATAATGACATCCTG 59 147785074 147788326 ATCCTTCCCGATCTGTTTCC 60 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408 1 1 2 80 1 47989486 47991225 GTCCCTGGAGGATGTTGAC 60 47991263 47991287 GATCTATGTTCTGTAGCTATTGCTG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 3 4 10 83 9 95203514 95298733 CTTTCCAAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000063853 1 1 10 80 9 95286390 95286409 CCCATCATGCCTAATATGGT 57 95286449 95298736 ATAGGCTTCAAATTCCTGAGAG 58 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374 3 1 2 84 4 99414431 99414454 TGCCAATAAATGTGTCACCAG 59 99414500 99414518 GTCCGGCTCCATATCTTCC 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 4 6 115 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566985 3567003 CATAGTCATAGCCTGGCCA 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 3 2 2 80 5 147825159 147825177 CTATGAGATGGAGGGAGGG 58 147824990 147825116 GAACATTCTTTCCCAAAGGC 58 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000079727 3 1 2 107 3 103773681 103773699 TAGAAGACCCAGAGGAGGG 59 103773770 103806658 AGTTCTGATTCGGGTCTGG 59 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 3 2 2 102 3 3657616 3657634 GCAAGTGTCTCAAGTGCAG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000029600 2 1 2 81 3 13245493 13246298 CAGTCACAGGTGGATACCC 60 13245430 13245449 TGTACAGTGAGTTTGCTCCA 59 NA Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 1 1 1 230 5 166870240 166870259 CATGCTTTCTGAAGTCACAG 57 166871459 166871478 GGTAGATCTCCTCCAAGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 2 3 5 80 18 79424926 79426825 CTTCAAGAACATTGTGACACC 58 79427269 79427287 CAGCTAAATCTGCTGAGGG 58 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586 2 1 2 83 1 15974757 16109247 GCATGCTAGGAGATGTACGA 60 15974693 15974711 GACGGAAGTCAATGAACGG 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000050222,ENSRNOT00000078583,ENSRNOT00000091677 3 3 8 80 6 64838635 64839961 GTAAGAAGGCTGGTATTCTTCC 59 64852710 64852728 CTTGGGTCGCAATATCCAC 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 1 2 2 80 3 100398810 100398830 GTGATGTTCCTGGTACTTCTC 58 100398872 100418829 TCATGGATGAGCAACAAGG 58 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578 3 1 2 81 7 2980224 2980243 TAACCAGTGGTCCCTTTGAG 59 2980045 2980181 CTCTGGAGAAGAGCCTTCAG 60 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000036744 2 1 2 81 12 17010877 17010895 GTCCCACTTCTCAGGAAGG 59 17010936 17011072 GAGGGTATACTCTTATCCACAGG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292 1 1 2 80 11 69637011 69640215 ATCTTTGAGACGAGCATGG 58 69640259 69640277 ACCGTCAAACTCTTCTGTC 57 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 1 2 2 83 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177271 88226820 CTGGTATTTCCTCGGTCCC 60 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 2 2 2 87 11 70570517 70570535 AAATGACGAAGAGCAGACG 58 70550960 70570468 CTCCTGCTTTACACTTATGGG 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855 3 1 3 87 8 111762742 111765076 AGTGTTTGAGGTCATGCCA 60 111762673 111762691 ATACTCATCCACTGGCCTG 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000091461 2 1 3 91 20 3346604 3346625 CAAGTTGCATGTTGACTTTAGG 59 3349786 3350388 AACGTAGTAACATACTCCCTGG 59 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000018153 3 1 2 164 1 92091149 92091278 CACAAAGTGGCAGAGTTCTG 60 92091004 92091022 GTTTCTCAAGTTCGCTGGC 60 NA Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 3 1 1 60 1 7801402 7801420 GTCTCTGATGGTGTCACCA 59 7801339 7801357 TCCTGTGTTTCTTCACGTC 58 NA DesignNoJunction Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000 1 1 2 80 12 47953044 47953062 GGGAGTCAAGAGTCATCGT 59 47949626 47952998 ACTGCAATACAAGCTCCGT 60 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000077347 1 1 2 80 10 10828697 10828938 TGTCCATGAGATGGGACAG 59 10828980 10829000 CTCCATTTCTTCCCATTCAGC 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000079515 2 1 3 81 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935193 154936961 ATCTGTAGAGCCATAATCCCTC 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000012129 1 1 5 92 3 2264983 2265001 CAACCACAACTATGCAAGC 58 2266826 2267930 TCTGTAGGTCACTGCTCTG 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048353,ENSRNOT00000012129 1 2 5 111 3 2263970 2263992 GTATAGTGTTGATGGAGTGTCTG 59 2264996 2266783 GAAGTTCGAGATGGCTTGC 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048137 3 1 5 113 3 2263967 2263990 GATGTATAGTGTTGATGGAGTGTC 59 2264995 2266026 AATACCGAGATGGCTTGCA 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 3 3 3 80 18 65506553 65506571 GACCAAGCTCCTGATTCTC 58 65506615 65507469 GGGTTCAGGTTCCTTTCTC 58 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769 2 1 2 81 19 118951 118972 CACTCCTGCAGAAATATTTGGT 59 118693 118911 AATTCAGTTTGAGGTTGCTGG 60 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 2 3 3 180 14 28430100 28448339 CAAGTCATGGGTTATAGGTGC 59 28422443 28429961 TTTCCGTACCTTCTTCTGTAGG 60 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601 2 1 2 82 6 126645991 126647025 AAACACAGCATGTCACCAG 59 126647067 126647089 GATAACATCTTGATCTCCCATCC 59 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000084613 3 1 2 180 18 1203162 1208834 AATATGGAGTTGCCGTGTG 58 1195743 1196537 ACAAATCTCTAAGAGCTGCAG 58 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537 3 1 2 81 18 1204629 1204647 GCTCTTCCAGAAGAACCCT 59 1203168 1204584 GCAACTCCATAGCAGTTGC 60 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534 1 1 2 80 17 90196320 90196341 ATCAGTTATACTGGGTCTGACG 60 90193280 90196281 ACTTAGCATCAAAGCTTGGTG 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000071930 2 1 3 81 4 183412737 183424210 GGAGGATATTTGAGCTTTGAACC 60 183412678 183412697 AGCAGCCTTCTATACTTCGG 59 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000047831 1 1 2 80 1 171921074 171932133 AAAGCAGAGGAGTTACTGCA 59 171932175 171932194 CTCATACTGGTTCCGTTCGT 60 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 3 3 3 80 14 33109300 33109318 GGAGTCTGATTACTGCACC 58 33109362 33110589 TTTAATGTGGTACCTGGCC 57 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019853 3 1 4 86 7 117721920 117721938 GAATGAATGGAGCACTGCC 59 117712146 117721874 CCATTAGTACACTGTACAGAGCT 60 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 1 2 2 80 3 161416521 161416541 CATGTATCACTACCACGAGGA 59 161416582 161417390 TTAGAGCCACGACCATACAG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000091735,ENSRNOT00000079738,ENSRNOT00000080419 1 5 12 80 20 3352433 3352452 TTTACATCCACGAGTCAGTG 58 3352495 3352681 GTTCCACTCGCTCTTTCTG 59 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090,ENSRNOT00000085684 2 2 2 163 7 40223522 40223704 GAATGAACAGCTTCGTCAGG 59 40223826 40224584 CTGTTAAGGTCTGTATTTCGTCC 59 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 2 2 2 80 X 71615838 71616845 ACCTTGAGGTCAGTGAACG 60 71615776 71615795 AATCGTAGGGAGATGTGCTG 60 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720 3 1 2 81 19 43356173 43356192 AGGATCAATGACCATCTGCT 59 43356236 43356349 AGTTCCTTAGCACGTCCTG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 3 2 3 82 14 25791723 25791741 AGCTTCCACCTCTTGTGTC 60 25791787 25859216 GAGAAGGAGTTGTGCATGC 59 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 2 1 1 142 1 80141722 80141740 TGTTCTACTTGGGCATCCG 60 80158287 80158305 CATCTTGGTCCGCATTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 3 2 2 81 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298256 167298275 GCAGTAGCTGTGAACTTCTG 59 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 2 2 2 80 10 47722340 47722358 TGATGCTCAGTTCGTACCA 59 47721611 47721929 GAACGAACATCTCTAGATAGCC 58 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000056457 1 1 3 80 9 111173237 111173255 GGTTATTCCTGTGCTGGTC 58 111173299 111176751 CTTCCCTTTCCTCCAAAGG 58 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 1 2 2 93 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690399 23690417 TGAACACCTCCATCTTCCC 59 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 2 2 3 87 12 22750793 22751045 TGAAGAAAGATGGACTGGTAGG 60 22750727 22750745 ACAGCCAGTCCAATGAGTC 60 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000005213 1 1 3 86 13 85392392 85392609 CTGCTTGCCAAAGTTGGAG 60 85377172 85377190 ATATGCTGCACGATGAGGT 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000012137 2 1 3 101 4 147333202 147351550 GAGCACTTCACAAGAAATTACC 58 147351612 147351630 GAGTGGTCATCCATCACAG 58 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537 2 1 2 112 20 31502140 31502158 GGATCCAGGGCTATCATGG 59 31488663 31492083 CTTCTCACCCTTCATCCCAG 60 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 2 2 2 80 9 74234373 74235274 TCACCAATTTCCAGGTGAC 58 74235318 74235336 AGTGGAACAGACTCTTGGA 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000078131 2 1 5 80 11 81426437 81426456 GTGTACATGAGACCTTGGGA 59 81424312 81426399 CCTAGAAATCATTCCTACCATGTC 59 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 3 2 2 80 1 147808345 147808363 GAGACAACAAGCACAACAC 58 147808406 147811016 CTCTTCCTGGACTTTAGCTG 58 NA Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 1 2 2 80 5 169553004 169553025 TGATGCTACTTCAGAAGATGCT 60 169553065 169554075 ACATCTTGGTCATCTGGGAG 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956 1 1 2 109 10 109972686 109972706 GTGTGACCAATGTGGAAATCC 60 109972382 109972487 AATCATGACCTGGGCAGTC 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 1 2 8 80 6 128061724 128061743 CTCTGAAGACGTTGAGAAGC 59 128061785 128062015 TTGTGCACCACTACAAACTG 59 NA Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 1 2 2 126 12 22732233 22732378 GAGGAGCAGAACCTGAGTG 60 22732467 22732486 AGCTTACACAGGTATACGGG 59 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 2 2 2 80 13 103185836 103185930 AAGTCAGAAGAGGAGTTCCA 58 103185973 103185991 TAGAACCGCACATAACCAG 57 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888 3 1 2 157 13 103157818 103157838 CATTGTTCAGTTCGGCTCC 59 103171314 103171332 CTGTTTCTTCCCATGCTCC 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274 2 1 2 81 7 125960224 125960242 CAGGACTGTGCAAAGAGGA 60 125960284 125963171 CAGCATCATCAGTATCTGACTG 59 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401 3 1 2 83 11 89557313 89570161 GTCCACAGGAGTTAAAGTTCC 59 89570206 89570224 ACCGTACCATCACCTACTC 58 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000026146 2 1 2 82 1 198099984 198100002 GGTGCTGGCTCTATATCCC 59 198100048 198100300 AGTAGTCATCCTGAGGCCT 59 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073 3 1 2 105 10 47789559 47792052 TTCACAAGCTGGTTCATGG 58 47792347 47792366 TAACAAATCCCTGAGAGCGA 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000080966 3 1 2 89 2 196145614 196148410 GGTTTCTCGAACAGCTTGG 59 196148463 196148481 CTCAGAAGTTGGCTTCAGG 58 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085 1 1 2 80 4 85141716 85141830 CAGATGACAAATGCCTGGG 59 85141654 85141672 GGTTGGTGAACTGGAAGTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 1 3 9 80 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545746 CGTGTATGAATATAGGCCTTAGAG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 2 3 9 80 9 81545177 81545196 AACACCATCAACCTGATCCA 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000077362 3 1 2 80 2 189871152 189871171 CCTGATGAGACCTCCTTCAG 59 189871214 189871545 GATAGAAGCCTGCTCAGCA 60 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 1 4 4 80 10 18571857 18571875 GCACATACGCACATTACCT 58 18571042 18571813 GAGCAGTCACAAAGTCCTC 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 2 4 4 80 10 18571047 18571819 AAGTTCGAGGACTTTGTGAC 58 18570986 18571006 CAAATTAAACGTCCACCTCAG 58 NA Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 2 1 1 61 4 149880293 149880311 GATACGCGCAGAATGTAGC 59 149881908 149881928 TGAAGAATCATACTTGTGGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000087085 2 1 2 80 20 20644278 20649958 TGGTCACTCTGTAAACAGC 57 20644216 20644236 GAGTACTTCACCATCAATGCT 58 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000077687 1 1 2 90 7 144090451 144091516 ACCTCTAGAGGCCTATACCA 59 144092683 144092701 ATGAGACTGTTGCATTGCC 59 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000065743 2 1 2 87 9 94316803 94323053 ATAAGAGCCAGAGTGGTGG 59 94323104 94323122 GATGAAAGTCACTGTGGCC 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 80 11 73702765 73702783 GTCTTTCGAGGAGAGCCAG 60 73702822 73703235 CAATTTGGTCTCCTTGGTATACAC 60 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 3 2 2 81 5 50131602 50131620 GTCACTGGTGTATGCTGTG 59 50131237 50131558 ATAGGTCACCTGGTACACTG 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 3 2 2 95 10 86987323 86987788 GTTTGGAAGCAATCAGTCCC 60 86987247 86987265 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000087305 3 1 2 81 13 109442306 109442326 AGGAAGATGACTATGAAGCAG 57 109418226 109442263 CTCGACTCTCCTTGTACAC 57 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 1 1 1 98 8 76452398 76452416 CCTAAGCAGCCAAGAAGGT 60 76450804 76450822 AACCTCCTCCATGAAACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669 2 1 4 80 1 64009743 64009762 TGTGACATCCAAGCTCTCAG 60 64009804 64011175 ACTCCAATCAGAGCCTTCAG 60 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512 1 1 3 85 13 49398902 49402569 AAAGTCCTCACCAACAACC 58 49391815 49391833 GTTCTTTCCGCAACTCCTC 59 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000084737 3 1 2 122 5 159722308 159722326 TCCAAGCCGAACATCTCTG 60 159722826 159723930 ATCTTTGAACAGAGCGTTGG 59 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 3 2 2 80 9 81834146 81834166 GTACACTGACCTCTCGTATCC 60 81834208 81835258 GTGGGTAGTCTGACGACTG 60 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032 3 1 2 86 18 312841 318917 CAGATACCAGGGCTCTGAG 59 312773 312792 CAATGGCCTTAATGGACTCC 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671 1 1 2 80 4 100765962 100767016 ATGGATCCTATAGCTGAGCTG 59 100765902 100765920 AGGGCCTGAAGAGTTAAGC 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000007602 3 1 3 80 6 131913100 131913664 CTCAGGTAGAAGAATCAGAGG 57 131913040 131913060 TAGGCTCTTCTATCTCCAGAC 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 1 1 2 80 3 172433389 172433414 GTTATGAACGTGCCATTTGAC 59 172433564 172433585 TGAGGTTCTATGACTAGATGGA 58 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 1 2 3 80 4 161731672 161731692 ACTAATCTTCTGAAGCTGCTG 58 161731538 161731631 AAGATCCTCAGGATCCACAC 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000074245 3 1 2 88 7 118715095 118715119 GAGATCTTTGAAGATTCTGATGGAG 60 118715163 118717567 AAGGCATCTTCCTCTTTCCTC 60 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 3 1 3 84 X 70567174 70567192 TGACTGACACCTTCTACCG 59 70567382 70567402 TAGATAACCAGAGTGACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 3 1 1 62 4 149801039 149801058 TGGTGTCCATTGAAGATCCC 60 149800993 149801011 CAGTAGCTGTGAGCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000080773 3 1 2 89 20 32077131 32077851 TCAGTGGGAGACCAAATGAC 60 32076231 32076250 CTTCTGAATTTCTTGCCGCT 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595 3 1 2 119 6 93519022 93519042 TTCGTCAAACATGCCATACAG 59 93519123 93521144 TCAGATGAGCACGAGTTGG 60 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 1 1 1 107 4 108301643 108301661 GAATGGAGGTTGTCACTCG 58 108302007 108302025 CCGAGTAGCAGGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330 3 1 3 87 X 142247727 142247745 TTCGTGCTAAGTGTCACGA 59 142129519 142247676 TTAAGCTGAGGCTCTTCGG 60 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000088697 1 1 2 106 10 94475390 94475408 TACCATTCAGGCCATGGAG 59 94475475 94475886 TTCTAAAGGTGTAGACATGCAC 59 NA Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 2 2 2 80 7 130143807 130143829 GACCTGTTGAAGTTTGAAGAGAC 60 130143431 130143767 ATCGTGGGATAGCTTTGGG 60 NA Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 1 2 2 80 14 37116685 37120547 GTCATCAACCTGCTTATTACAC 58 37120587 37120606 ATGAAACTCCAAGCTGTCAC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 2 3 7 98 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34668153 34668393 TTTGCGTTCCAACTTCAGG 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000082791 1 1 2 80 4 109475534 109475553 GACCCTCCATAACATGTCCT 59 109475470 109475493 GCTAGACACAGAAGAACACCT 60 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000029634 3 1 3 80 8 13871589 13871701 CTATCTACAAGTTCATCCTTGAGC 59 13871418 13871436 ACACTGGCTCCTGTTTCTC 60 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000070873 3 1 2 81 3 5543249 5544951 TCCCAGGGAAAGTGTACAG 59 5544994 5545014 CGTTGGAAGTAGGTAAAGGTG 59 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000077935 3 1 2 99 6 96848893 96848911 TAAGAAAGAGCCCGATGCC 60 96848973 96849571 TTCAGTTTCCGTGTCATTGC 60 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 3 2 3 82 10 35877247 35877268 TTCTTGAATTCTACAGCAGGAG 58 35877311 35878041 CTGGACTGGTTTGACAAGC 59 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419 2 1 2 81 5 59084329 59084347 GAGAACCAGGATTGGTGCT 60 59084390 59088507 CTCCAGTTTACCTGTTCAGGT 60 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937 2 1 2 95 4 155537268 155537633 CTGACTCAGAAGGGCTCAG 60 155537691 155537710 TACTGGAAGGTTTCCAGACG 60 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937 3 1 2 96 4 155537268 155537633 CTGACTCAGAAGGGCTCAG 60 155537691 155537711 ATACTGGAAGGTTTCCAGACG 60 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000078394 2 1 2 83 11 88092746 88093462 GAAACTCAAGCCAGGATTTGG 60 88092683 88092701 GCGGGCAATAACCAAAGTC 60 NA InUTR Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789 3 1 2 96 3 8962201 8962220 CAAATAACGCCAGGTTCCTG 60 8962277 8962926 AGGTAGACCCTGCTATAGGAG 60 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 2 2 3 80 20 3992060 3992449 GGAATGCAGGCTATACTATCTG 58 3992488 3992508 AGCATCATGTTGGAAAGTAGC 59 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 3 2 2 66 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503728 157503747 ATGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 2 2 2 66 5 157503970 157503989 CTTTGTGGCCAACATAGCTC 60 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 1 2 2 80 7 45370704 45370725 ACCATTGAAGGAATCATCACTC 59 45370765 45372061 TAGGAGGCAACAGATAACGG 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000006403 2 1 2 103 6 42255543 42255566 GGTAGAAGAAATCAAAGCATCC 58 42256293 42256311 CTATGTCACTGCTGAGCTC 58 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 1 2 3 80 18 62852096 62852316 CTATTGTGACAATCGTTTCAGC 58 62852357 62852375 CTGACCGAAACTGGTTCTC 58 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000017907 2 1 2 80 4 10692437 10692455 GACGTTAGTGAAGAGTCGC 58 10692496 10693080 AGATCTTATGGGCATATCTGCT 59 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681 2 1 2 80 1 276305425 276306808 TGCAGAAAGTGTAACAGATGTG 59 276305366 276305384 ATGGTTCTGGTGACCACAG 60 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000040306 1 1 2 182 3 104168262 104176576 AAATCTGGAGGACAGGACC 59 104167802 104168118 AGTGTCTCTACAGCTGTATCG 59 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471 3 1 2 90 20 34894586 34899854 GTCTGAAGACTTGGAGTGG 58 34899908 34899926 AGGACCCACTAACACAGAG 58 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 2 2 2 85 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939448 198942664 TGAATACATCCACCATGTTGG 58 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000077435,ENSRNOT00000089010 2 2 5 137 6 80235454 80237537 GAAGCACAAAGTTTGGAGG 57 80237638 80246044 ATCAGCCATCAACTCATCC 57 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000091448 3 1 2 81 X 10405859 10405878 ACTTGTTAGTAGCCACTCCA 58 10405382 10405816 ACCAGGTATTTGCAGAAGTC 58 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023574 2 1 2 94 1 205013817 205040518 GGATTTGTGAAGGTATCCGC 59 205013742 205013760 TTCCACAGTGCAGTCTCTG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000084230 1 1 7 80 1 83654924 83654945 CACCTTCTTATCTCGGACAG 58 83654988 83655008 AACTCTTTGTCCTCATAGTCG 58 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256 3 1 2 95 7 119826091 119826109 ATACAGCTGAGCTCAGCAG 60 119826165 119828041 CATCCTTCAGTTTCTGGATGTC 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000029842 3 1 2 80 11 72805392 72807390 ACTGAAACGATTAGGCAGG 58 72805330 72805349 GAATAGATCTGCAAGGGTGG 58 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 2 2 2 80 5 126671246 126671265 TTGTCCGGTTTACACTACCT 59 126671306 126674103 CATCTACTACACCTCGTAGGA 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000085285 1 1 5 80 8 6140683 6152367 TATTTCGGCAGACCGTCAG 60 6140323 6140342 ATTCTGAGTCCCTCCATCCT 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000052396 2 1 3 80 2 261396523 261396548 GATAGTACGTTAAGGAGAGCTAGG 60 261396464 261396485 CTGTTTCATTGGAGGATTCAGG 59 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 2 2 2 178 7 12429862 12429881 TAAAGTCCACTGACGTTTCC 58 12428691 12429721 ATCAAAGAACACCTGCGTC 59 NA InUTR Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 3 2 2 80 20 32247686 32253323 CACATAAAGCAGAACGCAC 58 32247624 32247643 TTCTCTGAAGCCTTTCAAGG 58 NA Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458 3 1 2 81 14 37262076 37284501 TGCAGCTGTCAACTTTCAG 59 37262013 37262032 TAGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 3 3 3 83 5 59497114 59498121 TACTACCAGGAGAGCAATGG 59 59498165 59498185 GATACTTTCAGGCTCTGACTG 58 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000083068 3 1 3 125 5 59502214 59502232 GAGCTGGAAGAGTGGTACG 60 59506527 59508707 TTCTGCTGCCACATAACCA 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245 2 1 2 89 8 22620572 22620590 AATGCCTACTGCCTACGAC 60 22620643 22620939 ATCCCTGTGTTGGCTAAGG 59 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 3 2 2 80 4 57760338 57762692 GATATACGGACAGGCAATGG 58 57762733 57762753 TCTGTGCTATAGATGTAGCCA 58 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900 3 1 2 83 9 116058679 116061761 AGGAAATATAGGACAACACTGC 58 116058617 116058635 ATGACCCATTCTGCATGAG 58 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651 1 1 2 80 X 10527759 10527777 GCATGAATCACCTCCACCT 60 10526450 10527716 TGCACATGGTTATTCTGCTG 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651 3 1 2 81 X 10527760 10527778 AGCATGAATCACCTCCACC 60 10526450 10527716 TGCACATGGTTATTCTGCTG 59 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 2 2 2 80 16 37159455 37159473 TGACCTCTGCTTAGCTTCC 59 37155037 37159413 CATGTGGATTTACACAACCCT 59 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330 3 1 2 80 4 157153531 157153551 GTCTTTACGTCAGACTTCTCC 58 157150887 157153491 GCATTCATTTACATCTACGGC 58 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000091319 3 1 3 109 7 40309614 40309633 TACTAAGGCACCATCCTGAC 59 40309523 40309544 GGTTTCCATTGAATTCGTTCC 58 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 1 2 3 81 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717824 164717845 GGGTGTAGATGATAGGGTTGAG 60 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000051883 3 1 2 80 1 123959504 123959939 ACATTCTCCTCTATAACAGTGGG 60 123959446 123959464 GTGCACATGCTTCTCTGAG 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145 2 2 3 80 17 6013635 6070590 CGGACACATTTGTTCAGCA 59 6013573 6013592 AAACTTTCCCAAAGGCTCCT 60 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 2 2 2 87 19 949940 951688 ATTCTCCACCAGGCTATGAG 59 949872 949890 GTCATCGAGTAGGGTGGTG 60 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 1 2 2 80 7 107590277 107590298 CCAACAACTGGTACTACATCTC 59 107586967 107590238 CAGCCACCTCAGAATAATGAG 59 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000084236 1 1 2 104 12 37012440 37012596 TCTGTGCTAAGAGGGACAG 58 37012664 37012682 GATAGAGCCTCGGTAGCTG 59 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240 2 1 2 82 X 128613778 128613796 TTACGGCCTGAAGATAGCT 58 128613842 128616960 CCACGCTGATTGTAATCCA 58 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 2 2 2 80 4 115821542 115828220 AGACTCCTTCTCTGATCCC 58 115828264 115828282 TTCAGGGTGTTCTTCTCCA 58 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765 2 1 2 82 4 115731519 115731540 AAGGTATTCCTCTAGACCAGAG 58 115731583 115752096 TCCCAGGAACCTGTTTCTC 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000071522 1 1 2 81 7 117678056 117678152 ATCACAGTGACCATGGCTC 60 117677905 117677924 TCAGATAGCCCATACACAGC 59 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000034642 3 1 2 103 14 38111106 38116056 ATTACCAGAGCAGTGGGAG 59 38111021 38111040 CTTATGAGAACGCTCAGAGC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000086509 2 1 4 80 8 117890874 117890894 ATCCTTTCCTATCTGGATGCC 60 117889599 117890832 CACAGTTGCAATCCCAAGG 59 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 1 2 2 80 11 86839224 86839247 GAGTATATTCAGCCAATACTGAGC 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 1 2 2 152 4 6947747 6947875 AACTGTCTCCAGGTACACG 59 6947991 6948009 CACCTTGTTGCTGAAGAGG 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 1 2 2 80 10 107307919 107310249 GATCACCAAGGATGTTGGC 59 107307857 107307875 TACATGACAGGGTCTCCAC 58 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 1 2 4 80 4 163845297 163845318 GAATGGATGTAAACAGACCTGC 60 163838425 163845257 CGAAGGAACTTCAGTTCGTC 59 NA Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 1 2 2 149 14 1779185 1781604 CATTCCATGATGCCAAAGGT 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942 1 2 3 80 2 200793304 200794073 AATTACTGGCCCAGAAATGC 59 200794116 200794134 CAGGAGGTCTTAGACAGCT 58 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452 2 1 2 81 2 252805690 252805711 TCCTAATCTATTCCAGAGCCAC 59 252805753 252807938 GAACGCCTCATGGAATCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000077770 1 1 2 80 6 135680860 135680878 CGTCTGACATGCTTCAGAG 58 135680920 135690465 TAGGGAGGAGAAATTCTGAGG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071741 2 1 3 82 1 217565367 217566578 TGGATAAAGCCTCAGTCCG 59 217573349 217573367 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 3 1 1 60 1 16989125 16989145 ACCATTAGCCAGACTAACCAG 60 16987928 16987948 CAGATCTTTCACTTGCTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221 2 1 3 80 17 9837787 9837884 CCCTATCAGAACACCATCG 57 9837928 9837946 CCAAATACCCAGAGTCACC 58 NA Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 1 1 1 60 1 97714804 97714822 AACTCCACACTCTCCTGTC 59 97716756 97716774 CTGAAGGTGACAATCCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 1 2 3 80 13 57008587 57008692 CCGATATGCGTTGAGTATGAG 59 57008527 57008545 GGGAGGGACAGATAACTGG 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000079571 2 1 3 91 4 27593760 27593778 GTCATTGCAAGAGTCTGGG 59 27593833 27594160 TTTCTGTGGTTGCTATGGC 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000035129 3 1 3 88 13 56115333 56120376 TTGAGTGTGAACCAAGAGCT 60 56121585 56121604 GGTGTGATGAAACAGGAGTG 59 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 1 2 2 80 5 4425410 4425429 CCAATGCCACTTACCAACTC 59 4425472 4447455 TACTGTACTCTGCTGTGGG 58 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000091320 2 1 2 85 17 9836353 9836371 GGAGGACTCGATTGTGGAC 60 9835019 9836304 GACCAAATTCCATCAGCCG 59 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 2 1 1 60 5 58198206 58198225 AGTCTGGGAAGAAAGGAAGG 59 58198082 58198102 TTGGAGTCTGTCTGTTCAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 3 1 1 86 18 27658070 27658088 CGCTTTCAATCCTCAAGGG 59 27658809 27658828 TCGTTATTCAGAGCGATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153 3 1 2 85 13 60595514 60595534 AATGGCCATTGTATCTGACAG 59 60595581 60596663 TATCCATGGGTTCCTCTGC 59 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000015935 1 1 2 80 6 136358087 136358105 ACGTGGTCAAGTACGAGAG 59 136358146 136362502 TCATCTTTCTCATCCCATTCCA 59 NA Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 1 2 2 81 9 16819536 16819554 AAAGGAGAACATAGCACCC 57 16819262 16819491 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 1 2 2 81 7 14255952 14255973 CAAGACACTATGGAAACACCAG 59 14252619 14255913 ATAGTAATCAGGGAGGTTCAGC 60 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 2 2 2 80 11 87693937 87698483 CCTGCCAACTTCAGATACC 58 87698526 87698545 CAAGGATGTTCTCCTCATCG 58 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824 3 1 2 80 14 3248348 3248847 GAGTACTGACTCAGTACTGGG 59 3248288 3248307 ATGGTTGGTGGTTTGTAACG 59 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 3 2 3 80 10 11075536 11075557 TTTGGAGAGTTCTCATCTTCTC 58 11073739 11075497 TGTCAACTCCATGATGTACTC 58 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 1 2 2 80 9 17123211 17123675 GAATATCGGAACCCAGGAGAG 60 17123717 17123735 GTTCCTGGTACACCTGACC 60 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 3 2 2 80 12 39590264 39590985 GGATTACAATGAGGCGAAGG 59 39591028 39591046 ATCTTCTCTACCAGGCACG 59 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000078846 1 1 2 80 7 117149802 117149821 GACACGATCTTCATTCAGCA 58 117149548 117149635 GTCAGGAAGTGCATTGGAG 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886 1 1 2 80 19 12536259 12553350 GTCCGATTTAAAGGTTATCCACTG 60 12536202 12536220 AGGTTGCGGAAGAATTCCA 60 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000028329 1 1 2 80 1 217789477 217789495 AAACGGAAGCAGATGAGAC 58 217786777 217789433 GGGATGATCACAGCTACTC 57 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000078117 2 1 2 94 8 13248032 13250743 TCATTTCACAGCCACATGAG 59 13247957 13247975 ATCGACGAAGTCCTGTCTG 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311 1 1 2 88 17 15784433 15792217 GGATTCAGATCGAGTCCAG 57 15792269 15792287 GTTGAAGGTCTCACCACAG 58 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 3 2 2 80 20 33270685 33270703 TTTGGAGCAAACCACTCAG 58 33269568 33270642 ACCAATCCATATCTGACACG 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000082455 1 1 18 101 1 43454956 43475251 TACCTCAGTGCATGGAGAC 59 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000083693 1 1 2 80 13 57380131 57403480 CCTCTAGAGGGCAAGAAGG 59 57403522 57403542 GGTAGACTTCATTTCCTGAGC 59 NA Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 1 2 2 80 14 3438532 3439787 ACTGTGGTCCAAATTACAAAGG 59 3438473 3438493 ACTACTTGCTTTAGCTGAGGA 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195 3 1 2 189 9 17206858 17206876 CGAGTATCGGAACTGTTCG 58 17204707 17206705 TTCCATCTTCAGCCTCTGG 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 113 18 56316004 56318427 TACTGGAGCCGATATGTCC 58 56315909 56315927 GAGAAACACGATGACCCAG 58 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 2 2 2 80 13 55502920 55515771 GCACATTCTTTAGTGGGCAC 60 55502859 55502882 GATGTCAGACTTGAAGTTGTATCC 60 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157 3 1 2 82 1 85118918 85118938 AAAGCTCGCAAGTACTTTGAG 59 85118981 85119274 CCCTGGTAATCCTTCCTGAG 59 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000025335 3 1 2 85 9 16953354 16953373 AAAGACTGCAACACCATCTG 59 16952830 16953306 TAGGGATCCAGTGTCTGTG 58 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 1 4 4 80 4 165185220 165185240 GGGATGAATGTAAACAGACCT 58 165176326 165185178 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 3 2 3 80 6 136119894 136127002 AAACTCACCAGAAGACTTCCA 59 136128838 136128858 TTGTTCCGAAGATACATTGCG 59 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000089747 3 1 2 84 4 21551017 21551035 TCCTCCTTCCAAAGCAAGG 60 21551082 21555088 ACGGAAGCAGATACCTTGTC 60 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000067281 2 1 4 80 5 58711024 58713080 AGGGACTAAGGACTACTGGG 60 58713120 58713141 GAATAGAGACTTCTCCCACAGG 60 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 2 2 2 80 1 280130924 280146360 GTTACCTTTCAGCCTCCCA 59 280130862 280130880 AACTACAACCGGCTCAGAC 60 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000091316 1 1 2 80 9 114990101 114994604 TAGTGCCAATCAATGATGAGAC 59 114990042 114990061 CCCGCTTCTTGTAAGTATGG 59 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000084049 2 1 2 116 4 117267291 117267309 TAAGGAACAGGAGCTGAGC 59 117264592 117264615 TCCAGGAGCTCAATGAACTG 60 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000085535 3 1 3 92 16 49562101 49562121 CAGAAACTCGCTTATGGCC 59 49553511 49562044 AGTAGTTCACATCCTGCGG 60 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000082030 1 1 2 123 10 70720211 70720229 TATGGTGGAGACCGAAGTG 59 70720314 70721578 TGTAGTCATTTCTTCCTCCCA 59 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 1 2 2 80 17 17828341 17836680 AGTTTGAACGAGAGGTCCA 59 17828279 17828298 CTGTGATATGGCACACTGTC 59 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000005478 1 1 2 80 10 17276382 17276400 TGAAATGAACCTGGAGCGA 59 17276444 17279378 CCCTGGAACCTGATCTTCC 60 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000068077 3 1 2 84 6 71180536 71349006 ATCGTGGACCAGAAGTTCC 59 71180470 71180488 TTTCAGAGGCAGGATCGTG 60 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000017740 3 1 2 91 5 150725760 150728271 TCTACAGTGAGGTGAAGCA 58 150728326 150728344 GTAAGAGGAACCAGGACGA 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163 3 4 6 84 9 17344346 17347174 GAAAGCCCATGAAGTGGTG 59 17347222 17347240 CTGGAAGATGTCCACCAGG 60 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000081465 3 1 2 88 1 91904993 91905011 CAAACAACGTCGTTGTCGT 60 91905061 91906645 GTTGTACATTGTTGGGTTCCA 59 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000065521 2 1 2 105 13 69777982 69778000 ACTACAGCTCATCTGCCTC 59 69765630 69777919 GAGAAATATTCTGTTATGGCTGAGG 60 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 2 3 3 102 3 22943647 22943665 AACTTGGAGCTCCACTCTC 59 22938848 22943585 CACCAATGTAACCTTGATACCTG 60 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000046744 2 1 6 82 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132080070 132091520 GGTTGATAATGCCCATGCT 58 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 2 2 2 80 8 25889915 25889933 TCGGAAGAATTCAGGACGT 59 25880855 25889874 CTTGGTTATCAGTTGGTTCTGG 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271 1 1 2 80 6 86739088 86739109 GTTCAACAAGACTTTCTTCTGC 59 86739148 86743354 CACTGGATGTAGTTATCCCTG 58 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 3 1 1 76 8 18431100 18431121 GATATTGATGGCAGTCTTCCAG 59 18433988 18434006 CTCTGTGAAGTCTTGCCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 2 1 2 80 2 148609964 148620981 GGTGATGAAGACAGGAATCC 58 148621024 148621042 CCAGAGGCTCTTTGATTCC 58 NA Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 3 2 2 80 10 55631044 55631650 GGATTGTCAAGGTAGACCTG 58 55631693 55631711 TATGTTTGAGCAGCTTGGA 57 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544 2 1 2 90 8 85791702 85791979 GAGTGGCATACAATGTTGTG 58 85790036 85790056 TGCATCTAGCTCTTGAAACTC 58 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 2 2 3 87 3 29868408 29868429 GTATGCATGTGACTTATGTGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 1 3 3 80 10 54184697 54184715 TGTCCCAGCAGTTCTTCTG 60 54184757 54198510 GTGGTATCCATTCACTGTTGG 59 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820 2 1 3 90 10 54126696 54156667 AGGACTAAGAAGCCTGGGA 60 54156721 54156739 GAGACAAGTAGCTGTGCCA 60 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 3 2 2 80 5 153855816 153857455 AGTACAGAAAGGTTTCACCG 58 153857496 153857516 GATTCTGGGATTACTGACCTC 58 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000066780 2 2 3 80 2 257468635 257472138 AGCTGAGCAGATTGAGGAC 60 257467315 257467339 ACTGTTATAAGGAGTGAGTCATCTC 60 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000092104 3 1 3 200 5 12504493 12526916 CGAAGGTTGCATATGATTGC 58 12498749 12504330 CGATTTCATCTGCAGTGGA 58 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000049857 3 1 2 96 3 122699773 122701348 GGAAGATCAAGCCAAAGAACTC 60 122699698 122699717 GTCATGGAGACCAGGTTCTC 60 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 3 2 2 94 7 121311154 121328651 TCGTGTCTTGGGTCTTCTC 59 121328708 121328727 GTAGATGCAGAACTCCTCCT 59 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000015632 2 1 2 90 17 9320772 9320790 CAGACAGTACAACGGAGGG 60 9320842 9328656 TGAACAACTTGCAACTTCTGG 60 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 2 1 1 65 X 15325016 15325034 CGAGACTCCTGATGTGGAC 60 15324563 15324581 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774 2 1 2 80 5 7641360 7703784 GAAGCTCAGGTGTACCCTG 60 7641298 7641316 ATGTACCTAGGAGGGAGCC 60 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 1 2 2 80 13 73686908 73686930 GATGATCTTGAGAGCTCTTACAG 59 73684777 73686868 TGCGGCTTCATCTCTAGAC 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087 2 1 3 86 1 136739824 136841531 ATTTAAAGGCCACAACCTTCAG 60 136739759 136739778 TCTCTTTGACAAGGTCGGTC 60 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000015084 1 1 3 80 1 136691158 136697363 GAAGGTGTTCACGGTTTCC 59 136691096 136691115 CAAGTCCCTGTTGAACTCTG 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191 3 1 2 80 7 66617143 66621811 CCAATAGCAAGAAAGGTGGT 58 66621854 66621872 GAGCTTCAGTTCTGTGAGG 58 NA Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 2 2 2 80 13 73920573 73921084 CCGTAATATTGAAAGCCATTCC 58 73920514 73920532 CCTTATGGCTCCTTCTCTG 57 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341 2 1 2 80 7 54894926 54895627 CTTATCAAGAAATGGACGCGA 59 54895667 54895687 TCATACACAGTTAGGGACTGG 59 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649 2 1 2 81 6 147933884 147933902 CAGCTATGAGCAAAGGAGG 58 147933947 147937497 TGTCACTTCTTTCTCAGCC 57 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000074896 2 1 3 80 8 90629087 90629225 AAGCTGAAGAGATCCACGT 59 90629025 90629043 TTACTGACAGTGTGCTGGG 60 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 3 2 2 81 5 64294798 64294816 GCAGCTCTACTTCCTTCAG 58 64294861 64303955 AACAGCAAAGGACTCTTGG 58 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798 1 1 2 97 6 104326119 104326137 TCAGAGGTCAATGCCACTG 60 104326198 104326331 TTAGTGCTGGTGTCCTCAG 59 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798 2 1 2 99 6 104326117 104326135 TTTCAGAGGTCAATGCCAC 58 104326198 104326331 TTAGTGCTGGTGTCCTCAG 59 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 3 2 2 80 8 78892864 78892883 GATGCCTCTTCTGTAGTCTC 57 78892924 78893341 GCAATTTGTACCTTGTGATGG 58 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000025536 1 1 4 80 1 139992314 139993825 AGGTCACATGGTTTCAGAG 57 139992252 139992272 ATAGATGCCATGGTTAAGAGG 57 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000046849 1 1 4 83 1 139924861 139924879 GAAGGGCCATACCAGAAGG 60 139903203 139924816 ATTAAAGAGTGTGGAAGCTGC 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518 3 1 2 80 6 26543918 26543937 GTTCGAGAAAGGAGATGGC 58 26543720 26543739 GTGACCAGATCAACGTAAGG 58 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000079769 2 3 4 84 14 80071062 80071080 GTCAGTCTCTGTCCCTCAG 59 80062914 80071015 TAAGGGAAGCGTGAGTAGAG 59 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302 2 1 2 81 5 137084513 137084533 GGTTCAAAGACTTCCTTCCTG 59 137079263 137084470 CTGATTGGTGAACCACCTG 59 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000065373 2 1 2 80 10 91280348 91280366 AAGCAGCTGAAAGAACCAC 59 91280410 91280733 CACTGTCTTGAGCACTGTG 59 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000082410 3 1 6 100 20 4612053 4612222 TAACCACCAAGGTAGCACG 60 4612286 4612304 TGTCTACGTCGTTCACCAC 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344 3 1 6 166 20 4614410 4614524 CGAGTACCGAGTGAACCTG 60 4614654 4614672 CGTACAGAACGAACAGCTG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000066222 3 1 2 106 8 58378640 58378659 TGGAAGTATACTCTCCTGGG 58 58378727 58384067 GATAAGAACGTCACTCCCTG 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853 2 1 3 88 3 128914906 128919219 GAAATAGAAAGCGCAGCTG 58 128919271 128919289 TTGTGACTGAAGTCATCGG 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000045393 1 1 3 80 3 128919303 128922552 AACAGCGTCAAGAAGACCT 59 128924484 128924502 TGCCTGCTCATCTTCTACG 60 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858 2 1 2 123 2 113605823 113605842 GTATCACCTGACCCTTCAGG 60 113584458 113605738 CCTTGGACCATTTACGTGTC 59 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 1 3 3 80 4 165985878 165986734 CTTCTCAACTCTTAGATGTAGAGC 59 165985821 165985840 TTTCATCAGAAGCAGGAGGT 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 1 1 2 106 16 85280743 85305258 GGAGGAAACAGGAACTTACAC 59 85280657 85280675 AATAGCCTGTTTGCCTCAC 58 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 1 2 2 81 9 19126819 19134319 TGTGGTCAAGATTGTGGCT 60 19126756 19126774 ATTCTTGAGGTACCGCCAC 60 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 1 2 3 81 20 5109837 5109855 CACATGCTCTTCATGGTGC 60 5108903 5109793 TCTTGAAACCGTAGAGCCTG 60 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000089062 1 1 2 80 13 74933875 74933893 ACAACATCATGGGAGAGGA 58 74923394 74933832 CACAGGTATCTCCTTCTCCT 58 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 1 2 2 80 3 35181017 35181036 TTTGCTGTTCTCCTTCAGTC 58 35181078 35190515 TCTTGATGGTCTTTGCTCTC 58 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 2 2 2 101 1 87928653 87929974 AGACCTGACTGACAACCAG 59 87928570 87928588 TTAATGCTCTCCTCCTGGC 59 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 3 2 2 80 14 7204959 7204977 AACAGCTGGTTCTTTGGAC 58 7205021 7206515 GGCATACACTTTCCCTTCC 58 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000085756 3 1 3 118 3 14643905 14644877 CTCAAGATCTGGATCACAGGA 59 14637206 14643825 AACTGTGGGTCCTGTTGAC 60 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 1 2 2 80 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329877 87329896 TTAGAGGAGTCGACTGATGG 58 NA Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 1 1 1 61 1 31531999 31532017 CACTGACTGGGAAGATCCA 59 31533639 31533657 GTCCAGCACTCTTAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990 2 1 2 62 5 136112518 136112536 AGCTGGATTACAGCATCGA 59 136112562 136124439 CACCTTGGCTGTTCTTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 2 2 2 80 10 70515040 70515061 CTCAGGACATACAAGCTATGGA 60 70514123 70515002 TCTTCTTACCAATGCTTCTGAC 59 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076 3 1 2 99 8 58149243 58149266 GACTCAGAAACAAGCCTATTACAG 60 58153902 58154022 TCAGAAGCTTCAGTTCTTTGTG 59 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281 3 2 3 93 12 46353401 46353419 GGTGGGAGAGTTTCTAGGG 59 46352197 46352621 CAAGTAATTTCTCAACCCACAC 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000057036 3 1 3 100 12 46353453 46353471 CAGCTTTCCTGACAAGCAG 59 46352197 46353392 CAAGTAATTTAGCATCGGCCTC 60 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000067384 3 1 2 90 1 239442199 239442218 TCATCGACAGACTCATTGCT 59 239442270 239444430 CTCCCATCAGCTGAATTCTG 59 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 3 2 2 81 2 122803801 122804438 GACCATGAGATTCTGTTGGC 59 122804482 122804500 ACTTGTCCAGCTGAGACAG 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809 3 1 2 86 16 54471466 54471487 TGCATTTGAATATGTCGGATGG 60 54469216 54471425 GATCCAAGAAGACTTGTTGATAAGG 60 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000016801 1 1 2 85 7 143847218 143851682 TCTACAATCCGTGGAGACTC 59 143847152 143847170 TATAGACCCGAGGAGGTGG 60 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 1 2 2 80 1 279649158 279649179 GGAAGAAGATATCAAGCTGGAG 58 279649217 279658852 TATTCCATTGACTTCATCTCCC 58 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000086660 1 1 3 80 4 147687633 147689061 CACTGACTGGATCTCTGGG 59 147692073 147692093 AACTCTGACATCAGGTCACTG 60 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 1 2 2 80 10 90304447 90305082 ATGACAGAAAGAGTGTTCCG 58 90304386 90304404 CAGAAAGCTATCCAGGGAG 57 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750 1 1 2 80 11 32066829 32067272 GTCGGTCACATGGAAAGAG 58 32067316 32067334 TGTCCTGGATTGTCTTGGT 59 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 2 2 2 103 7 70479897 70480270 GGATCAAATGTCGTTCGTCC 59 70479813 70479831 TCTCCTTGCTCAGGAAGTC 59 NA InUTR Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199 2 1 2 83 1 178955221 179009896 GTTCATCCAGTCCTACTTTGTG 59 178955159 178955177 GCTCGATCATCGATCACAC 59 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390 2 1 2 80 X 156926067 156926085 CTCAGGTAGATTCCGAGGC 59 156926221 156926627 TCTCTTCATTGTCACTCTCCAG 60 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004 3 1 2 82 13 86424557 86425894 CAATCACAGGTGGATACCC 58 86424493 86424511 CTGTACATCTGACTGGCTG 58 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000079935 2 1 6 80 5 150162918 150163391 TTTGGATGTTCCAACCAGC 59 150162856 150162874 ACTCCTCAATCCCTTCTCC 58 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 2 2 2 82 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764994 93766521 ATTCACTGCACTTTCCACC 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634 1 1 2 87 7 15242240 15247388 AGGAAATGGAGCCAGTGAC 60 15247437 15247457 AGCTTCTTCTGACTGGAATCC 60 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000051402 2 1 2 80 1 129769066 129769085 CCTGCTACTCTATGTTTGCC 59 129767271 129769023 ACAACTGAGCATGTGACTC 58 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 3 2 3 89 14 81948657 81950487 TCTGGAATATAGACAGGTTCAC 57 81951868 81951887 CATGTAGAAGAGATGGAGCC 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 1 8 10 80 10 87127518 87128305 TACAGCAGAAAGGTCTGGG 59 87127456 87127474 GCCACCAATAATCTTGCCA 59 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000011000 1 1 3 81 6 3743696 3748788 AATGGAAAGAGTGCTGCAC 59 3743633 3743651 TCCACAGTCTGTAAGACGC 60 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 1 2 3 81 2 27003790 27003810 CTGATGAGGACAAGTGTTCAC 59 27003850 27006171 TCATATTCCTCCTGAAGGTCTG 59 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 2 2 2 80 7 13045676 13045694 CATCTCTGAGCAGGAGAGC 60 13045737 13046142 TTGGCTATCTGCTCCTTGTC 60 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000080418 2 1 2 80 12 40631517 40631538 CTTGAAGCACATCTAATTGCAC 59 40631123 40631477 AAACTTTCTTTCCTCCGGAG 58 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000073296 1 1 2 118 10 55913340 55913358 CAGATGGAGTCAGAGCTGG 60 55913201 55913259 CAACACTTGCTGTGATGGTC 60 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000070821 3 1 2 83 2 87010945 87010963 TTTCCAGACATTCCTGCCT 59 87011012 87011033 AACAAAGGTTTACCACACTCC 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000060832 3 1 2 101 20 5136997 5137015 TCCAGCAGGACATTCAGAG 59 5137079 5137503 CCTGCATTGTCTTTCGTCTC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888 1 1 2 80 19 19267520 19268289 TTTACTTGAAGACACTCCCAG 58 19267460 19267478 GGGTCATCATAGCACTCTC 57 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 1 2 2 81 7 59302553 59304080 GTCTTGAAGCGAGGAAGTC 58 59304125 59304143 CACTGTCTGGAGTCTTGTG 58 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 2 3 3 80 7 61183065 61184368 TCTCCAGAGAAGAAGGCAG 58 61184409 61184430 CTTCTTTATAGGCTGGTCTGAG 58 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 2 1 1 60 1 280635158 280635176 CCACCGCTACCGATATCTG 60 280637330 280637348 GAAACTCTCGGGACTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000091418 1 1 2 82 2 27311219 27311237 ATATTTGCCGTTGCCAAGG 59 27308966 27311173 ACACCTAAATGAGAGCCCG 60 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 2 2 4 167 1 201226087 201238799 CATCTGACAGTCCAGAGCA 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 84 13 91220523 91222367 CATCACTGTCCAAGGTTCAG 59 91220458 91220476 CAGGAGGCACATCACTAGG 60 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 3 2 4 104 13 91222430 91222448 CAAAGCCAACCACAGTCAC 60 91189247 91222362 GTTGCTGAACCTTGGACAG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 3 3 3 80 8 78379226 78385827 GCCTTGGCATCTATTTATTCTC 57 78379167 78379186 TGAAGGAGATCCTACTGGTG 58 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185 2 1 3 80 8 78653903 78653923 TCTCCACCTGTTAATAGTGGG 59 78538203 78653861 ACGCTCATCCATACCTGAC 59 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000035915 1 1 2 81 16 9602071 9607679 GCTGTTTGACAGGTTTCTGG 60 9607721 9607741 AAAGACAGTTGCCAAGTTCTG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 3 2 5 82 7 80745184 80745202 AGTGGTCAAGAAGATGGCA 59 80745248 80777746 GTGTGGTGATCTCCCACTC 60 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 3 2 2 80 8 82331818 82331837 ATAGAAGACGAAGTGGACGA 58 82330352 82331775 ACAATCGTGGTACCTTTCC 58 NA Rattus norvegicus 81 Mgst3 ENSRNOG00000004245 ENSRNOT00000005719 3 1 1 80 13 85607429 85607447 CAGCTTTGTGATGGTGCTC 60 85606405 85607388 TACATGACAGGGTACTCTACCT 60 NA Rattus norvegicus 81 AC135400.1 ENSRNOG00000037087 ENSRNOT00000055893 3 1 1 61 7 127081598 127081616 ACCGCTATGAATTCCGGAG 60 127081555 127081573 CTGCGAACAAACTAAGGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmi ENSRNOG00000027502 ENSRNOT00000030373 1 1 1 80 3 37464310 37464333 GAAGTGGAAAGTGTAGACTATGAC 59 37458986 37464272 AATCTTGTCAGCAACTCCAG 58 NA Rattus norvegicus 81 LOC100360876 ENSRNOG00000042823 ENSRNOT00000044379 2 1 1 60 X 97075847 97075871 GAGTATCTAATTCCTTTCACTGCTG 60 97075885 97075907 TGATGTAAGGATGTAGGTGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr1h2 ENSRNOG00000019812 ENSRNOT00000026862 3 1 1 84 1 100556833 100557295 CCATCGAGATCATGTTGCT 58 100556767 100556786 CTGTAGGTGAAGTCCTTCAG 57 NA Rattus norvegicus 81 Smtnl2 ENSRNOG00000015157 ENSRNOT00000020379 2 1 1 81 10 58961455 58961473 TCGACTACAATGCCCTGAG 59 58952961 58961410 CAGTTGGCCAGATTCTCAG 58 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 1 2 2 80 13 84617727 84617745 TCCAGGAATTGGAGGATGG 59 84612932 84617683 CAAATAGGGCTGGTACCCA 59 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 1 2 3 80 14 83344867 83344885 AACCTCAGCGAGTTCTTCC 60 83344929 83345154 TGATGGGCTGATCACACTG 60 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 2 1 1 60 3 143122562 143122580 ATTGTCCATTGCAGGAAGG 58 143123355 143123375 GTCTCCACAATGTAAGTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000067996 2 1 2 101 8 96514721 96516904 GTAATACACAAGTTGCACCTG 58 96513794 96513815 TTTGGACTCTTCTATGATCCAC 58 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 1 2 2 80 1 37770967 37771086 GAGACTATTTGTTCAGGGAGG 58 37771125 37771146 CTCTTGAGAATGAGACCTTCAG 58 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000024041 1 1 2 80 1 37747681 37749916 TGCGTAGGTTTAGAGCTCG 60 37749959 37749978 TCCGAGTGACTTAAAGTGCT 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 3 3 6 80 10 89221805 89221823 CCATTACTTACCACAGCCC 58 89218041 89221763 TTCAATAAATGGCTCCTCTCC 58 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 1 2 2 80 20 4539757 4539776 AGAGTGTCTGAGGAGAGGAG 60 4539326 4539717 CAGCTTGTGGTCTTCATAACTG 60 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 3 2 2 80 2 153871339 153879736 GCAATTTCAGGATCATTGGG 58 153879778 153879797 TCATGTATGAGTTCTTGCGG 58 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000020955 2 1 2 98 9 42920762 42920780 AGAAGTCCAGTCAGATCGG 59 42918037 42920700 ATGAAATGGGAACTTGGGC 58 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000035310 3 1 2 83 8 50237323 50238294 CTACAGTTACCAGGACCGC 60 50237258 50237277 TAGTCATCCTCTTCCACGGA 60 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223 2 1 2 81 8 32545796 32545906 GACCAGGCTTTCTGTAAGGA 60 32545945 32546701 GAACCACATAGTCAGTTCTTACTC 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366 2 1 3 94 10 89183380 89183398 AAGTTGAGATGCTCAAGGG 57 89183455 89184386 AATCTCCTCAGGTACCTGAC 58 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000078931 2 1 3 104 10 89182642 89183343 CCCACTGTTATGTACTCGGA 59 89183410 89183428 TAGAAGCGGACGATGTTGG 60 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516 3 2 5 80 13 34547527 34547547 TTCTCAGCCTAACTCCATTCC 60 34547589 34554365 TCATAGTCCAGCATGCTGG 60 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 3 2 2 80 10 59810588 59810606 TATTTCCGAGTCACCGGAG 59 59810646 59812798 CTGCAGGAAATATTGAATCCCTC 60 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000060503 3 1 2 98 9 35294120 35294139 CCATAAAGCCATTGACCCAC 59 35294200 35294986 GTTCTCCTGTGCTTGACTG 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 3 3 3 70 10 89286284 89286304 GTTCAACCTCGTCTTTAAGTG 57 89288292 89288311 AATAGTCAGTGTCCAGGACC 59 NA DesignNoJunction Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172 3 1 2 105 1 193200985 193201003 GAATACCTAAGGCGACGCT 60 193201072 193202401 CTGCATACATGTCCACCGA 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268 3 1 7 80 16 64036979 64041403 CTTCTACATGACTTCTAGGAGGA 59 64041441 64041461 TCTTTCACAAGGCTATGATCC 58 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000008838 2 1 3 114 8 26431686 26434072 ACAACCGAAGAACCTTGAG 58 26434149 26447685 TCCAGATTCACCTACTACCA 57 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200 2 1 2 85 5 75144820 75146025 TGTGAACCACCATCTACGT 59 75144751 75144770 CAATCGTAGTCTGTCCAAGG 58 NA Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 1 2 2 80 9 43077782 43078065 CACGTACACTGACAATCGA 58 43078109 43078127 TTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453 1 1 2 80 7 3382300 3382318 CTATCACCGAGCCCATCTG 60 3382362 3383234 CTTGAAGAATCCCAGCCCA 60 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381 2 1 2 81 7 3320347 3333282 AAATGAGTTCTCAGGCCCA 59 3333326 3333345 CAGTAGGAGAACGTAGAGCA 59 NA Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 3 2 2 80 9 2205407 2209052 CTTAGGAAAGGAACCATGTTACC 59 2209090 2209110 CTCCTCCTTGCAATCATACTC 58 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 3 2 2 60 14 85948311 85951510 ACAGGTAACCTGGATGGAG 58 85948269 85948289 GAAGGAATACATCCTCCAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598 2 1 2 80 2 39439339 39439359 GGATGTTGAAAGAGTCCACTG 59 39439400 39444781 CCACCTGACAACATGTATCG 59 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000083009 1 1 2 80 10 78153807 78153827 CGGCATTGATAGGAATGAAGG 59 78134475 78153767 AAACGTCCATCCTTGTAACAG 59 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001552 3 1 3 80 12 47199190 47203596 AACAGACAACCTGATAGATCGT 59 47204371 47204391 TTTGTCCTTGTCAAATTCCCG 60 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139 1 1 2 80 7 94491065 94500823 ATCAACAGAAGCTGAAACCG 59 94491004 94491027 CTAGGTTCAACACTTCCATTAAGG 60 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 2 2 2 80 8 59580255 59580275 ATATCTCAGTTAGTGGACGTG 57 59582917 59584585 CACATCTATCCATTCCTGCT 57 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 2 1 1 60 8 36875576 36875594 AACAGTAGAAGAGGCCTGC 59 36874814 36874833 TAACCACATGGTACCATCCT 58 NA DesignNoJunction Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 2 2 2 80 8 23145983 23146001 ACTTCATCATGTCCCTGGG 59 23145733 23145939 CAAAGGTCTCCTGGAACCT 59 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000092200 1 1 2 98 8 23146189 23146605 TTCCTCCAGCATGGATACG 59 23146109 23146127 AATCTCAGGGTGGAAGCTG 59 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261 3 1 2 80 2 210748654 210748672 GTGGACACTTTGGAGAACC 58 210748164 210748611 GACTCTGCTAAAGTCAGGAC 58 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 2 3 3 80 9 50625727 50625746 TCGGCACATAAACATACGTG 59 50625785 50626453 GCTATATCATACCCACATACCTC 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000087383 1 2 4 85 14 84277971 84277989 GAGATCCTCCAGGATGTGC 60 84278038 84308362 AGGTCAAAGTTCCGAGCTC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000077863 2 1 6 80 5 158120072 158122139 CCAAGTGCAATGAGTTCACC 60 158122182 158122200 TGTTGATCTCCTCCACAGC 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000077863 3 1 6 81 5 158120073 158122140 CAAGTGCAATGAGTTCACCA 59 158122183 158122202 GTTGTTGATCTCCTCCACAG 58 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000084085 1 1 2 80 5 154313241 154313262 GTATGGGAACCCAGTACCTG 60 154313306 154313324 AAGAACTTGGACTTGCCGT 60 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 2 2 2 80 8 56592803 56592822 AAACTGACCAAAGAGCAGTG 59 56592861 56593507 CATTGAATCTTCCCTTAGCATCC 60 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 2 1 1 60 2 223029565 223029584 CCAGTACAACTTCTAGGGCT 59 223044887 223044907 TCTGGATGTCACATCTCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644 1 1 3 80 16 54184385 54187892 TGGTGGTTTAACAGGTGTC 58 54187935 54187954 ACCATTATCGGTTTCTGCTC 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 1 5 8 80 20 4389081 4389099 GTCTGTCATGGATGAGCAC 58 4388931 4389038 TAGTCCGTGTCTCCATACTG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 2 5 8 80 20 4389074 4389092 ATGGATGAGCACAATGTGG 58 4388924 4389032 CTTCAAATAGTCCGTGTCTCC 59 NA Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000048318 2 1 2 83 8 61813790 61813808 CGTTCTCATGGCAATACGC 60 61813854 61813875 TTGATAATGGAGGCCCTTGG 60 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 2 2 2 80 2 218967498 218967517 TAATGGTAGACGATGACGTG 57 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980 2 1 2 80 16 71266606 71266627 TCAGAGACCTACTTTCAAGCAG 60 71266441 71266565 AGGTCCAGATACTCCTGGT 59 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000065222 3 1 2 108 2 227580630 227582427 AGTTTGGGAGCTGAGAGTG 59 227579769 227580560 AAGTATCATAGGAAGCCCTGC 60 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849 1 1 2 125 3 164048713 164048731 GAGCTCTTCTCCAGAGACC 59 164041132 164047818 CAGACACAGGAAGGAGTCG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 3 3 8 81 20 4482894 4482915 CAAATTCTTCCTCTATGGCCTC 59 4482957 4483254 AGCAGGAACTGGATCTGTG 59 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 1 2 2 80 2 211787103 211792219 CTTGGGATAGCAGATCTTTCAG 59 211787044 211787064 GCTTGATGTTCTAGAGTGTCC 59 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 2 2 2 80 5 159521402 159521421 GTATGCTGTCTGCATCTTCC 59 159521463 159521567 AGAGTCATGCTTTGCTTCCT 60 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 2 2 2 80 3 132958333 133012107 GTGAGTACCTCAGGATGTG 57 132958271 132958289 GTCTTCAGCTTGTAAAGCG 57 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010440 1 1 2 123 5 128648121 128652058 ACTGAGAAACAGTCTGCAG 57 128653201 128653221 CTGGGTATTTCAAACTACCCA 58 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000065497 2 1 2 81 5 156682869 156683581 GGAATATCTCGGCAGGATCC 60 156677513 156677531 CTGTTTGCTGAACCCAAGG 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000078851 3 1 2 196 5 156088636 156088655 GTGGTTACTGCTGATCACC 58 156087438 156087934 TTGTTGTGAGCATAATCCACC 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000046115 2 1 2 80 5 162247612 162248279 TGAAAGAATGGCTCAGTTGC 59 162248321 162248340 CCAAGTCTGACTGTGAGAGG 60 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 1 2 2 81 5 155705920 155705939 TGACAACTATGCAGTCACAG 58 155703125 155705876 ATAATCCTCTTGCCCTGCA 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316 3 1 3 101 16 74800674 74800692 AGCCAGTCAAAGACAACAG 58 74800879 74801374 AAGAGCTTGTCTCTTCTGTG 58 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 3 2 2 82 3 175887065 176040690 CGTCATCCAGGTTAACACCT 60 176040735 176040753 GTTTGTTGGCAATCACGGT 60 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974 1 1 2 80 16 71158639 71158658 TAGTAACCATTCCAAGCGGA 59 71147892 71158596 AATCTTCCACCTCTGGCAC 60 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 2 2 2 116 3 161021668 161024021 CCAAATTCTGAGCTTCAGCC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026 3 1 2 83 3 176756485 176756503 GATTCATCCGGACACATCC 58 176754176 176756441 GCAGTGATCACATTTAGTACTG 57 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 1 2 2 80 16 79875340 79875358 AGTTCGATGAACTGCACCA 60 79872717 79875300 GGATCTTCCTTTCTTCCTTTCTC 59 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360 3 1 2 80 3 79980387 79980406 TCAAGACTCTGTCATCGGTG 60 79980050 79980347 CCTGAACTGTTACTCACTTCAG 59 NA Rattus norvegicus 81 SNORND104 ENSRNOG00000051842 ENSRNOT00000077717 1 1 1 60 5 153909203 153909221 TTGACTTCCTATGCAGAGC 57 153909161 153909179 CAGACTCCGATTTGCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000053163 ENSRNOT00000086511 1 1 1 65 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490246 150490264 AATTGTTTCTCTGGGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057529 ENSRNOT00000077895 3 1 1 60 2 57997088 57997106 TGCGTTTGTCTTCTACTGC 59 57997129 57997148 CCACACCAATCCTGTCTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000053530 ENSRNOT00000080112 1 1 1 60 2 45268635 45268654 CAGATCCACTCCTCCTTTCC 60 45268677 45268695 CAACCTTGCTTAGCTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038269.1 ENSRNOG00000050081 ENSRNOT00000074439 2 1 1 60 X 44158122 44158141 AGTTGAGCCTTATGTGACCT 59 44158163 44158182 CAAGATGAGTTCTCGGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007924.2 ENSRNOG00000061331 ENSRNOT00000085814 3 1 1 60 2 35229158 35229178 TGTACTTCTTCCTCAGCAGTC 60 35229118 35229141 GGAGTAATAACAGTAGATTGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561558 ENSRNOG00000053609 ENSRNOT00000086804 2 1 1 65 X 158261677 158261695 GACCGAAAGTGAACGTCTC 59 158261630 158261649 GCTCCCTTGTTTGATTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044273.1 ENSRNOG00000000748 ENSRNOT00000000975 3 1 1 60 20 845340 845359 GATCTATGCAAGCTCGAAGG 59 845379 845400 ATACTCGTGCTTTATACCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058614 ENSRNOT00000087708 1 1 1 60 8 111512167 111512185 CATGGTGCTTCAGTAGTGG 58 111512125 111512143 TCATAGGTCAGAGCCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055509 ENSRNOT00000082394 3 1 1 60 2 188168312 188168331 TGTGATTTCTCCAAACTCGG 58 188168352 188168372 AAAGCAGTCCTTCATTACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057260 ENSRNOT00000088640 1 1 1 60 8 122644854 122644873 GGATCCATGCAGAGATTAGC 58 122644813 122644833 CTTCCTCCAAGATTTCCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055618 ENSRNOT00000086883 1 1 1 60 5 89705922 89705940 AGTAGGTGCATCAGAAGGT 58 89705961 89705982 GGTCAGAATACTGAGTGTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094348.2 ENSRNOG00000057778 ENSRNOT00000091094 2 1 1 166 20 5125467 5125485 ATGAGAAAGTCCACAGCCC 60 5125317 5125336 ATACTTAAAGTGTGCGCACG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059735 ENSRNOT00000080002 1 1 1 60 16 46127814 46127832 GTACATCAGGAGGTGGTGG 60 46127856 46127874 CCCAGGCTGGAATACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059871 ENSRNOT00000090973 3 1 1 60 8 35140994 35141012 TTTGCATTTGTGACTGCTG 57 35141036 35141054 TAGCTTCTGTCCTTTCTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059989 ENSRNOT00000088735 2 1 1 65 8 76587450 76587468 GCGTCCGGAGGTTATAGAG 60 76587403 76587422 AAATGTTCACAGGTCAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059989 ENSRNOT00000088735 3 1 1 66 8 76587450 76587468 GCGTCCGGAGGTTATAGAG 60 76587402 76587421 CAAATGTTCACAGGTCAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058536 ENSRNOT00000080027 3 1 1 60 8 67905428 67905450 GATACAGAGAAGATTAGCATGGC 59 67905470 67905488 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053492 ENSRNOT00000089036 1 1 1 61 5 70726345 70726363 TACAGGTATGGCTGCTGTG 60 70726388 70726406 TGAGGTGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109100.2 ENSRNOG00000057827 ENSRNOT00000090916 3 1 1 80 15 33342551 33342979 CGGAGTAAAGATACCTGATGC 58 33342491 33342509 TCTGGCTGGATTAGTTGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057730 ENSRNOT00000086533 1 1 1 69 2 237613098 237613116 GCTTCAGCAGCACATACAC 60 237613047 237613065 TAATCCTAGTGCAGGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041675 ENSRNOT00000063428 1 1 1 60 8 130864748 130864766 CTTGGAAGCTAAGCAGGGT 60 130864706 130864726 TGCTCTTGTCTTATTCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061771 ENSRNOT00000086971 1 1 1 61 5 34074884 34074903 AGTATCGTAGCCAATGAGGT 58 34074842 34074863 CCACGGAAACATTTCTATTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055120 ENSRNOT00000084067 2 1 1 61 2 150482271 150482292 AGATAGGAGAAGATTAGCATGG 57 150482231 150482250 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056546 ENSRNOT00000083499 2 1 1 60 11 67543369 67543389 AACATTGGAAGGATACAGAGG 58 67543405 67543429 CCTTAATTAGTATGTCATCCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053629 ENSRNOT00000084140 2 1 1 60 11 71971347 71971365 AGGTGACAGAGAAGACAGG 58 71971305 71971324 CATGCAGGTGTTCACAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051434 ENSRNOT00000080715 2 1 1 71 11 43947905 43947924 TTATGGCTGCTGTTTCACTC 59 43947955 43947976 GAATACTCATTGTAGACACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054528 ENSRNOT00000091045 2 1 1 60 5 173404867 173404889 GTGTTGCTCTTATATCAGTCAGG 59 173404829 173404849 CAAGCTAGGATGAACAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000053795 ENSRNOT00000083849 3 1 1 63 2 260115222 260115240 GGTCAATGATGTGTTGGCA 59 260115177 260115199 CTAGAGCTCAAATGTTAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050253.1 ENSRNOG00000044599 ENSRNOT00000069866 1 1 1 65 5 158439017 158439035 TGGATATGCAGCTGACCAG 60 158438970 158438988 AAGCCACAGTTACCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046763.1 ENSRNOG00000059973 ENSRNOT00000089152 2 1 1 80 5 5690262 5691746 AGAGCAGGAGTTCTTACCT 57 5690200 5690218 GATGAGCATGACCTCAGTG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050753 ENSRNOT00000071367 3 1 1 60 8 84353090 84353109 AGCCATACCATCATGATCTC 57 84353130 84353150 CCCATCCAAGTATTAACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052380 ENSRNOT00000088060 1 1 1 60 8 67482614 67482634 ACAAAGAAGATTAGCATGGCC 59 67482653 67482674 GTGGAACAATTCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053793 ENSRNOT00000088146 2 1 1 61 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874231 ATTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034790 ENSRNOT00000052913 1 1 1 60 16 81470820 81470838 GAACGCTCCTGATCTTGTC 58 81470862 81470880 CCAATACTAACCAGGCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056774 ENSRNOT00000086568 2 1 1 60 X 80139388 80139410 CAGATCTAAGGAACTTGACTGAC 59 80139350 80139371 GGGAAAGCACTAATTCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052262 ENSRNOT00000080975 2 1 1 60 16 41928697 41928718 GAAATTGGCAGAGATGAGACAG 60 41928658 41928682 CTGATGTTTATAGGGTAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055748 ENSRNOT00000086759 3 1 1 60 16 19382204 19382222 TTTCCCAGTATCCCTGGTG 59 19382162 19382180 AGTCTGTCAAAGCTTGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059888 ENSRNOT00000079145 2 1 1 60 8 91715735 91715755 AAATTCAGGGAACTTGACTGC 59 91715775 91715795 GGAGAACTCTAACTCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025284.1 ENSRNOG00000043057 ENSRNOT00000067450 3 1 1 60 16 31553474 31553492 ATCAACCCTGATGAGTGCC 60 31553515 31553534 GAGTTGGTCTAGCTGGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053499 ENSRNOT00000088013 1 1 1 60 2 50578111 50578132 GAGAGGATGTGTCTATACTCTG 57 50578150 50578171 TGGTAGGCTATTAGTCATTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057055 ENSRNOT00000081617 2 1 1 60 8 85571942 85571963 AACGACACAGAGAAGATTAGCA 60 85571903 85571922 GGAAGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000055594 ENSRNOT00000088171 1 1 1 60 8 69096757 69096776 GAGTCCTCACTGCTTATGTG 58 69096799 69096817 TCGCCTTAGATAGCAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039694.1 ENSRNOG00000057430 ENSRNOT00000074962 2 1 1 60 X 82710806 82710825 CACATGGAAACAACCTTGGA 59 82710846 82710866 TTGTATCTACAGCTCCTTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000060263 ENSRNOT00000081805 1 1 1 60 16 2193861 2193884 GGTCATTTATACTGTAGGAAGAGG 58 2193903 2193921 AGCAGACTTTCCAAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071210.1 ENSRNOG00000023330 ENSRNOT00000037171 3 1 1 63 8 104949515 104949533 CTTCGCTAGCAAACAGGTG 59 104949560 104949578 GATGGTTCTGACCAGTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054744 ENSRNOT00000087277 1 1 1 60 16 71162955 71162973 AGTCAAGATTTCAGGGCCA 59 71162913 71162931 CCTACAGTTCTAGACGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042012.1 ENSRNOG00000048494 ENSRNOT00000073030 2 1 1 60 X 145822421 145822440 TGAAACCACCTTCAACTCCA 60 145822463 145822481 GGCATACAGGTCTTTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058633 ENSRNOT00000086110 2 1 1 60 2 176084991 176085013 GGAACGATACAGAGAAGATTAGC 59 176084953 176084971 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045233 ENSRNOT00000070500 1 1 1 60 1 32051363 32051384 ACCATCTTGTTTGATCCTAGAG 58 32051324 32051345 CTTCCATCCAAATACAAAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053020 ENSRNOT00000091748 3 1 1 60 6 65355666 65355687 CCTAAGGCTTTATGGATGTGAC 59 65355707 65355726 CTCTCCTCTGCCACTTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053833 ENSRNOT00000088971 1 1 1 64 1 194939844 194939863 TCAGTCAAACATTCCTTGGA 57 194939799 194939817 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036509.1 ENSRNOG00000051479 ENSRNOT00000090580 1 1 1 67 12 45511329 45511348 GTGGGACATTTCAAAGACCT 58 45511279 45511299 CATTCCAGCCATCTTGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000007671 3 2 4 80 7 115865023 115865135 TGTGCCTCTTGAACATCCT 59 115864961 115864981 CTACGATGACCAGTATGACCT 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000054892 ENSRNOT00000079934 3 1 1 60 6 133826519 133826537 CGATGATGAGATCTGGTGG 58 133826561 133826579 AGATGTCTGGTTACTTGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057524 ENSRNOT00000084572 1 1 1 60 2 184860110 184860130 GTGCTAACCACTGTGATTTCC 60 184860151 184860170 CCACTACCACAAATTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000055346 ENSRNOT00000082924 1 1 1 60 1 152004312 152004331 GCATATGCATCAGTAGGTGG 59 152004351 152004372 GGTTAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000055346 ENSRNOT00000082924 2 1 1 60 1 152004307 152004328 GTGTTGCATATGCATCAGTAGG 60 152004346 152004367 GAACACTGAGTGTAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056971 ENSRNOT00000078432 1 1 1 60 2 108115721 108115740 GTAGGAGTTGGAATAGGAGC 57 108115680 108115698 GTACTGCAATACCAGCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056965 ENSRNOT00000090251 2 1 1 60 9 17079508 17079528 CGGTACTGAGAAGATTAGCTG 58 17079547 17079568 CACTGAGTTATGAATTTGGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000053927 ENSRNOT00000082298 2 1 1 60 2 165695626 165695646 TGATATTGGAGTGCATCTGAG 58 165695586 165695607 CGATGTTGTTATCAACAACCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052875 ENSRNOT00000082399 1 1 1 60 9 65051145 65051164 GTCCTCAGTAAGTGGCAGAG 60 65051104 65051123 TCACAGGTCAGAACACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044264 ENSRNOT00000069531 1 1 1 60 6 47310023 47310043 TGATCTGAGAAGCTAAGCAGG 60 47309983 47310004 AAACATCTGTGTTTCTCATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071814.2 ENSRNOG00000053687 ENSRNOT00000078308 1 1 1 60 8 131965734 131965753 CGAATGTAAAGAGTGTGGGA 58 131965775 131965794 TCTGTGATGAGCGATAAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059410 ENSRNOT00000091516 1 1 1 60 9 74256113 74256137 GTGACTGTTGTATCATATGTGTAGG 60 74256152 74256173 CAGTGATTGAAGAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056042 ENSRNOT00000080428 2 1 1 60 X 85123281 85123302 GTTCTTCTGGTTTGCATTAGGA 59 85123323 85123341 AAAGGCAATCAGGAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056635 ENSRNOT00000079950 3 1 1 60 X 14540474 14540492 CATAGCAGAAGTGACACCA 57 14540515 14540534 GAATGAATAAGCCTCACCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051441 ENSRNOT00000077183 3 1 1 60 X 113457023 113457041 TTGAAACCAAGAGCTCCCA 59 113456981 113457000 TGAGTCCCTTTATCGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016310.1 ENSRNOG00000048867 ENSRNOT00000074692 3 1 1 91 14 96499569 96499587 CACAATTGCTCAACAGCCT 59 96499642 96501018 GTTTGAAGAGCTCACCGAG 59 Novel InUTR Rattus norvegicus 81 AABR07042541.1 ENSRNOG00000047138 ENSRNOT00000071223 2 1 1 60 X 158969021 158969040 TTTGATAGGAAACCTGCCTG 58 158968980 158968999 TCTCGATATGAAGACCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000055223 ENSRNOT00000086233 1 1 1 69 1 41383977 41383995 ATAATGTCCAGCACAGGGT 59 41383926 41383946 TCTGGAATCAAAGTTCTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047701 ENSRNOT00000072112 3 1 1 60 6 7157056 7157074 CTCAGAAGCTAAGCAGGGT 59 7157096 7157116 TTAACCACTCTGTTTCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007743.1 ENSRNOG00000041964 ENSRNOT00000063717 1 1 1 60 2 26641755 26641776 GTGTGATATTTGGGACATACTG 57 26641716 26641735 GAATGCCAGATGATCAAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054225 ENSRNOT00000082655 1 1 1 60 3 123643762 123643780 GAGAAGATTAGCATGGCCC 58 123643804 123643822 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045087 ENSRNOT00000070354 1 1 1 60 1 177946048 177946066 ATCTCGGAAGCTAGGAAGG 58 177946090 177946108 TGACTGATCTCCTTCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045032 ENSRNOT00000070299 1 1 1 60 9 26776887 26776906 AATGTGCCCAATCTTGTCTG 59 26776846 26776864 ACATGTTCTAACCAGGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027494.1 ENSRNOG00000061243 ENSRNOT00000077100 1 1 1 90 17 34155591 34155609 TTAAGCGAGAGGTTTGTGG 58 34155663 34155681 ATCTACCAGTTCCTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059902 ENSRNOT00000084135 1 1 1 60 16 49064582 49064602 CAGAAGGGTAAAGGAAGTCTC 58 49064542 49064560 ATCCAAAGAGGAAGTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059925 ENSRNOT00000088932 3 1 1 60 1 126420173 126420193 CTTCCCTGAATAGAGGAGGAC 59 126420133 126420151 CAGAGACTCCCGTTTCTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000060333 ENSRNOT00000084476 1 1 1 65 16 51963424 51963442 TCATAGCTCAACACTGCTC 57 51963377 51963397 CTCCTGTTAGACCATCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049778.1 ENSRNOG00000061137 ENSRNOT00000072545 2 1 1 81 5 137527788 137527806 ACAGGTACATCGCCATCTG 60 137527721 137527745 GAGCATATTGTAACCATGGCA 59 Novel Rattus norvegicus 81 SNORA26 ENSRNOG00000061087 ENSRNOT00000084635 2 1 1 61 6 80224781 80224801 TAAGAGGCTAACACAGAAGGG 59 80224824 80224842 GAGTGGAGCCTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026353.1 ENSRNOG00000051800 ENSRNOT00000085716 2 1 1 96 16 73680443 73680461 GGTCTGTTACTGAGCTCCC 60 73680365 73680383 GCTTGTTTCCTGCTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000051716 ENSRNOT00000089356 3 1 1 60 16 14132961 14132980 AGTAGTTTACACAGCCAGAC 57 14133001 14133021 CATATCGGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055833 ENSRNOT00000077393 2 1 1 109 7 46482810 46482828 GTCAGGAAGGATGTTTCCC 58 46482719 46482741 CCATTACCACAAACTACTAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD59 ENSRNOG00000057249 ENSRNOT00000089900 2 1 1 61 7 2506335 2506356 CTTCCTTGATGATTAGCTTCTG 57 2506378 2506396 GAATGGCATCTGGCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061861 ENSRNOT00000089671 1 1 1 60 2 150256052 150256073 TAGTGAAGATTATCAGGCTCCT 58 150256013 150256031 GACTTCTCCCTGTTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061861 ENSRNOT00000089671 3 1 1 60 2 150256052 150256072 AGTGAAGATTATCAGGCTCCT 58 150256012 150256031 AGACTTCTCCCTGTTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044784 ENSRNOT00000070051 2 1 1 61 6 127776516 127776535 GAGCATGACCATCTCTTCTG 58 127776557 127776577 TCCTAATACTAACTAGGCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056016 ENSRNOT00000086857 3 1 1 60 3 123417343 123417362 CTTGAGATCTCATGATCGGG 58 123417381 123417403 CTAGACTACAATGGATGAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058225 ENSRNOT00000087896 3 1 1 60 6 80726574 80726596 CGATACAGAGAAGATTAGCATGG 59 80726536 80726554 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909704 ENSRNOG00000049596 ENSRNOT00000076262 1 1 1 80 1 271298976 271298995 GGAAATAGTGAACCTGACCA 57 271299037 271302657 AGTAAATCTCGGATGTTGCT 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050589 ENSRNOT00000073815 1 1 1 60 12 1512877 1512895 CCCGATCTCGTCTGATCTC 59 1512835 1512853 TCCCATCCACGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055186 ENSRNOT00000088318 2 1 1 60 X 28453857 28453875 GTGGCTGCAAACAGTATCC 59 28453896 28453917 CAAGTTCTCCTAGAGAAACCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044409 ENSRNOT00000069676 2 1 1 60 X 40233346 40233366 TCAAGTCAGTACTAGGTTGGT 58 40233387 40233406 TACCCACTGAGTCTTCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058493 ENSRNOT00000088107 1 1 1 60 6 54346895 54346914 CAGTAGGTGGCAGAGAAGAG 60 54346931 54346955 GATGTTCATAGATCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035832.1 ENSRNOG00000055795 ENSRNOT00000084789 3 1 1 81 12 24091225 24091243 TCTACTTCACCGTTTCCAC 57 24091287 24091337 GTGGGTGTGATATAGTCTGC 58 Novel Rattus norvegicus 81 SNORA57 ENSRNOG00000054533 ENSRNOT00000086318 1 1 1 60 1 225085010 225085029 TCTCGGTGTTATGTCTTCGG 60 225084969 225084987 GGCGTCTGAGGATAGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061493 ENSRNOT00000079405 3 1 1 60 X 129074388 129074406 ACTGGGTGACAAAGAAGAG 57 129074346 129074366 AGAAGTTCTTAGAGCAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD105 ENSRNOG00000060532 ENSRNOT00000077761 1 1 1 60 8 21906943 21906961 CCTGTCTCATGATGATCCC 57 21906985 21907003 GCGTTTACTTTGAAGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043564.1 ENSRNOG00000059734 ENSRNOT00000078023 2 1 1 80 19 29243213 29243235 ACTTAGAGATGGAGAACACTGAG 59 29241311 29243176 AGTGGTGATTTCTAGAGAAGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061534 ENSRNOT00000086394 1 1 1 60 2 217707283 217707304 ACATATGCATCACTATGGTGAC 58 217707244 217707265 AGATGTTCATAGGTCAGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051497 ENSRNOT00000086254 2 1 1 60 4 13660073 13660093 TCTGTTACACTGTTGATCCCT 59 13660115 13660133 ACACCTGCCTAATGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000058445 ENSRNOT00000083773 2 1 1 60 8 117588481 117588503 CAAGAAAGTCTCACCTATTCCAG 59 117588443 117588464 GATCCTATATGACAGCTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052638 ENSRNOT00000079865 2 1 1 60 9 35610509 35610529 TATACAAGTAGTTGTGCTCCC 57 35610469 35610488 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135389.1 ENSRNOG00000042940 ENSRNOT00000065156 3 1 1 60 8 61604284 61604304 GTTTGGTTTCATTGTGCTGAC 59 61604326 61604344 TCGTCTTGCTTCTTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055435 ENSRNOT00000080739 3 1 1 60 1 218731022 218731041 TACTTCAGCAGCATACACAG 58 218731061 218731082 AAGGGACCCTACTAATCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055217 ENSRNOT00000087732 2 1 1 67 6 42853852 42853872 GATTTATGACAGGCTCATCCC 59 42853901 42853919 GTTAGGAGCCAGTTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U11 ENSRNOG00000053127 ENSRNOT00000084206 2 1 1 70 16 44929553 44929571 AAAGGGCTTCTGTCCTGAG 59 44929605 44929623 TTCTTGATGTGGATTGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057885 ENSRNOT00000087387 1 1 1 60 10 86377936 86377955 CACGGAGAAGATTAGCATGG 59 86377895 86377916 TGGAACACTTCTCGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA47 ENSRNOG00000044194 ENSRNOT00000069461 2 1 1 60 2 25046248 25046267 TGCCTTCCATTGGTTAAGAC 58 25046289 25046308 GAGAGGATGTTCTTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054608.1 ENSRNOG00000052603 ENSRNOT00000091109 1 1 1 60 3 163139045 163139068 CATCTGGGTGAAGTTCTAATAAGG 59 163139087 163139105 CCTCTTCAATGCCTCTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036723.1 ENSRNOG00000060291 ENSRNOT00000029285 3 1 1 60 X 881327 881348 TAACTATGGGACAGCTTTACGA 59 881288 881307 TAGGCCACATACAAGAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039498.1 ENSRNOG00000060786 ENSRNOT00000087119 1 1 1 60 X 78565507 78565525 TGGCGAGGACTATGATGAG 59 78565548 78565567 CATCACCGACTTGATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027753.2 ENSRNOG00000047776 ENSRNOT00000049785 2 1 1 66 17 43808861 43808879 GAACTCGTTCGTGAACGAC 59 43808912 43808930 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC121203.1 ENSRNOG00000054410 ENSRNOT00000091642 3 1 1 60 3 102588545 102588565 CTCATCAAAGGCACTATCCAC 59 102588505 102588525 TACAAAGTACAGCAGAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056334 ENSRNOT00000079064 1 1 1 61 10 7629462 7629480 ACAGGAAGATTAGCAGCCC 60 7629505 7629523 ATATGGAACGCTTCAGCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056334 ENSRNOT00000079064 3 1 1 62 10 7629462 7629480 ACAGGAAGATTAGCAGCCC 60 7629506 7629524 AATATGGAACGCTTCAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057168 ENSRNOT00000084703 2 1 1 64 15 17864441 17864459 CTGCCATGTCTCACATGTG 59 17864487 17864505 ACACTGAGCAGAGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055932 ENSRNOT00000085715 1 1 1 60 15 4063623 4063641 TGACATCCTACACCTACCC 58 4063581 4063599 CAATACAGACCAGGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056505 ENSRNOT00000086109 1 1 1 60 4 89366380 89366398 AGAGGCTACGTTGACACTC 59 89366420 89366440 GTTAGGCTCCTTCTCATTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051914 ENSRNOT00000091445 2 1 1 60 4 136165621 136165639 GAGAATCAGTAGGTGGCAG 57 136165661 136165681 ATTCTGATGTCCATGGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141152.1 ENSRNOG00000046520 ENSRNOT00000070924 1 1 1 60 4 9903119 9903139 CCTTGAACTCAGAGATTCTCC 58 9903160 9903179 TGGTACAGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053568 ENSRNOT00000089129 2 1 1 60 4 120350164 120350183 TCCTCCAGGATGTCTTTGTC 59 120350201 120350224 CATAGATCCTTGACCAAAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000057393 ENSRNOT00000077365 3 1 1 67 1 194919182 194919201 AAACATTCCTTCGAAAGCTG 57 194919134 194919153 CCTCAGTCACGATGATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000061486 ENSRNOT00000086763 2 1 1 60 10 103280335 103280356 TGTAGAAACTTGGAAGAAAGCC 59 103280296 103280319 GAAAGAAGTATTCCTTGTTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035561.2 ENSRNOG00000051906 ENSRNOT00000081310 3 1 1 97 12 19681074 19681092 TACTATGTCTCCGGTGGTG 58 19681232 19681802 TGGAAATGTTGGAGTCTCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059471 ENSRNOT00000090167 3 1 1 60 4 179738579 179738598 TGTTATGTCACATGTGCGTC 59 179738617 179738639 CATAACGGAGTATAGACATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043626.2 ENSRNOG00000058304 ENSRNOT00000087801 2 1 1 86 19 33266503 33266522 AGACTGATTTCCACAGTGGT 59 33266570 33266591 GCAGATGTGGAGGATATGGA 59 Novel Rattus norvegicus 81 AABR07008420.2 ENSRNOG00000058320 ENSRNOT00000079900 2 1 1 86 2 57677797 57677815 CTTCTGTTTACCTTCCCGG 58 57677865 57677884 GAAGGCTACTGGGAAAGAG 57 Novel Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000087865 3 1 2 86 2 52569789 52609297 TCCAATGGGTTGAGAGCTG 60 52569721 52569740 CACTCTGGAAGACCTCAGTG 60 Novel Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 1 1 2 68 2 52609167 52609185 GACTCAGAGGAAGCCAGAC 60 52591316 52609135 TTCCTCTGAGTCCCATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027633.1 ENSRNOG00000049875 ENSRNOT00000072320 2 1 1 60 17 39668877 39668897 CTAGTTCAGCTGTTTGATCCT 58 39668837 39668857 CATCATGGATGAGAAGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD61 ENSRNOG00000054559 ENSRNOT00000078086 2 1 1 60 X 159889882 159889903 TTGAATCCACTGATCATCTGAC 58 159889843 159889864 AAGCTCAGAACTTCTTAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053707 ENSRNOT00000081811 3 1 1 60 2 84254055 84254075 TGTCATGTGCACATCAATAGG 59 84254015 84254037 TCAGAACAGAGTGTAGACATAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000051644 ENSRNOT00000089858 2 1 1 60 X 74098263 74098281 GCAGTCCTTTGTTCATCCT 58 74098221 74098240 TAGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053697 ENSRNOT00000078649 3 1 1 60 17 48432328 48432350 GATACAGAGAAGATTAGCATGGC 59 48432370 48432388 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060754 ENSRNOT00000084515 1 1 1 60 X 74936893 74936912 AGGCTATGTCTGTCTATGCT 58 74936852 74936875 TAGGCTACTAACCATTCAGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027009.1 ENSRNOG00000041433 ENSRNOT00000063186 1 1 1 60 17 10572353 10572371 CCTGCTCATTTCCCTATCC 57 10572311 10572329 ACTGAGTGCTTACCAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 3 1 1 61 3 76976072 76976092 AACGTGACTGAATTCATCCTC 59 76976112 76976134 AATAGAATTCTCTGAACCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000053627 ENSRNOT00000081299 3 1 1 63 17 43932961 43932979 CATGGGATCTCCAACTGCA 60 43932916 43932934 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 3 1 1 65 7 7291110 7291135 GATATCTTGTTCAGACACATGG 57 7291160 7291179 ATGAATGTCAACACAGCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051803 ENSRNOT00000089130 1 1 1 60 17 62530689 62530711 TCTAATATTGAGGCCTCCTATGG 59 62530651 62530670 GAAACTCACCTCCCTACTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500473 ENSRNOG00000046529 ENSRNOT00000075994 2 1 1 80 5 77341446 77341467 AGTGCAGGGAACTATATTTGGT 60 77340699 77341408 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 AC114111.2 ENSRNOG00000057190 ENSRNOT00000091092 1 1 1 81 7 70487984 70488004 AGAGTCAGACCTCAGACAG 58 70488049 70488067 GAAATAGTTGCAGGCAGGA 58 Novel Rattus norvegicus 81 SNORA81 ENSRNOG00000054687 ENSRNOT00000085256 3 1 1 61 12 30197046 30197069 GCAGAAACTAGGATTATGTCTTGG 60 30197083 30197107 ACTGAGCTAAGAATACTCTACTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054845 ENSRNOT00000087505 3 1 1 61 1 31163822 31163841 GCCCTCAGAAGTACTATGTC 57 31163864 31163883 GGCTTAATCTCTGTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 3 2 2 97 5 77246517 77246536 TCTGAGTTCAGACATCAAGG 57 77246269 77246457 GACAACGATCAGTCTTGGT 58 Novel Rattus norvegicus 81 SNORA74 ENSRNOG00000058587 ENSRNOT00000091686 2 1 1 60 3 142141688 142141707 AGGTTTCCTTGTACCTAGGC 59 142141730 142141748 AACTTGCTATTGGCTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rab37 ENSRNOG00000059793 ENSRNOT00000086469 1 1 1 80 10 103706599 103706620 TTCCTGATCCAATTCAAAGACG 59 103706656 103707618 CACTTTATTCCTGAAGTCTATGCC 60 Novel Rattus norvegicus 81 AABR07030156.1 ENSRNOG00000046186 ENSRNOT00000074522 2 1 1 81 10 72247345 72247366 AGAAGACAACTTTCCATGGC 59 72247283 72247304 GTATATGTCCATGCAGAAACAC 58 Novel Rattus norvegicus 81 AABR07028977.1 ENSRNOG00000061035 ENSRNOT00000078773 1 1 1 60 10 1406699 1406717 GAGACCAAACCCTTCATCC 58 1406739 1406759 CAGATTTGAACAGAAGAACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132980.1 ENSRNOG00000059512 ENSRNOT00000074001 3 1 1 68 2 194014351 194014371 GTCAATGGTAGAGTCACATCC 58 194014301 194014324 AAACACTGTATAGAATCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056165 ENSRNOT00000089183 1 1 1 60 2 210199287 210199305 CCCAAAGTCAGGTGTTCAG 58 210199245 210199263 GAACACAGGAGGATTTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061722 ENSRNOT00000082292 3 1 1 60 4 175979632 175979650 AGAGGATGAGGGTCATAGG 57 175979590 175979613 GGATATTCTAACAGGAGAGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058403 ENSRNOT00000078269 3 1 1 60 4 101781589 101781612 ATGTTAGTAGGAGGTAGAGAAGAG 59 101781552 101781570 TCAGGACATCAGTGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061633 ENSRNOT00000087642 2 1 1 62 10 49279951 49279969 AATGAGGTTTATCCGAGGC 57 49279994 49280013 TGTTGGTAAAGTGCTTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059152 ENSRNOT00000080302 2 1 1 60 2 178608278 178608299 GGAGTGACACAAATGATGTCAG 60 178608317 178608338 CTTGGTGAAGATTTGTGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546,ENSRNOT00000057756 2 2 5 80 6 115138796 115138815 AAATGGATCAGATGCTTGGG 58 115117817 115138755 CCAAATCTTCCTTTAACTGCC 58 Novel Rattus norvegicus 81 AABR07055789.1 ENSRNOG00000008398 ENSRNOT00000011102 3 1 1 81 7 10068394 10068415 GTATGGATTGCCAGAAATCCTC 59 10064931 10068352 ACCTTCGAACCACATCCTC 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060497 ENSRNOT00000079888 3 1 1 60 2 101171975 101171994 GATCAGTAGTGGAATCGCTC 58 101172016 101172035 TATATTGCCCAAGCTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059789 ENSRNOT00000082557 2 1 1 60 12 7116051 7116069 CCTGTAGTCCCAGCTACTC 59 7116009 7116029 CAGAACTCCTGGACTCAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044193 ENSRNOT00000069460 3 1 1 60 14 66685022 66685040 CAGAGAACAGGACCAAGAC 58 66684980 66684998 CAACCAAGTACCAACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076888 2 1 2 83 13 77800241 77818850 CACATCCTTAGTGCTCCCA 59 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000061732 ENSRNOT00000081698 3 1 1 60 2 198515671 198515689 CAGATTCCCGTAACTTCCG 58 198515709 198515731 GCTCCAAATAATACAAGTCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.7 ENSRNOG00000048836 ENSRNOT00000071016 3 1 1 65 1 121263993 121264011 TTTCTACCACTCAGGCTCC 59 121263946 121263964 AATCCATGGCTAGAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058623 ENSRNOT00000090994 2 1 1 60 1 86776339 86776358 AGTTGCAGATTGAACTCCTG 58 86776380 86776399 GCCAATCAAGTGCAGTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029215.1 ENSRNOG00000045537 ENSRNOT00000073610 1 1 1 60 10 14957414 14957435 CCTGCTCTACATAATGAGTTCC 59 14957375 14957394 TCTTGAGACAGGGTTTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102548479 ENSRNOG00000028202 ENSRNOT00000029433 1 1 1 89 X 58227871 58227889 CTTCCAGTCACCAGAGGTC 59 58227939 58228131 TCTCCGTAATCTGAAAGAACGT 60 Novel Rattus norvegicus 81 U4 ENSRNOG00000051966 ENSRNOT00000088761 3 1 1 73 12 46862483 46862501 ATGAGGTTTATCCGAGGCG 60 46862428 46862447 TATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051435 ENSRNOT00000089285 2 1 1 60 14 81467274 81467292 GGCAAGGTTTATCCTTCGG 59 81467232 81467252 AATCATGCAGTCAAGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057577 ENSRNOT00000089803 3 1 1 72 3 25202935 25202953 ACAGTCCAGGTACATAGGG 58 25202881 25202899 GTTTAGGTAGATGGGCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mup4 ENSRNOG00000033130 ENSRNOT00000046760 2 1 1 91 5 77406765 77407478 TTTGTTGAGCATGACGGAG 59 77406692 77406712 CCGTTCTTGACATTAACAAGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053994 ENSRNOT00000083918 2 1 1 76 1 158057532 158057551 TAGAAATGTTGCAGGTGTGG 59 158057475 158057494 GAGCATAGACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103129.2 ENSRNOG00000053541 ENSRNOT00000081766 3 1 1 80 7 140137439 140137458 CCCATGGATCTGTACTTGAG 58 140133563 140137396 GACATCCAAGTCGTCACTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060677 ENSRNOT00000087829 1 1 1 60 2 177973922 177973944 GATACAGAGAAGATTAGCATGGC 59 177973961 177973982 GAACACTTCATGAATTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054090 ENSRNOT00000091434 2 1 1 60 17 24500590 24500611 CTACCATTAGAAGGGTACAGAG 57 24500632 24500650 ATTTGCAGGTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Eif6-ps1 ENSRNOG00000058513 ENSRNOT00000083783 1 1 1 60 14 86979952 86979970 TGCCAGACTCACTAACACC 59 86979910 86979933 ACTATAGAAGTTCTCTGATCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007758.1 ENSRNOG00000046691 ENSRNOT00000075436 3 1 1 62 2 27324680 27324698 ATAGTTCTGAGCACTGCCT 58 27324636 27324654 TCAGAGTTTGAGGACAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052890.1 ENSRNOG00000043655 ENSRNOT00000068922 2 1 1 61 3 81106501 81106520 TTACTACAAGTCCCAGGGTG 59 81106543 81106562 GCATGCAATGCTCTTATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD15 ENSRNOG00000055569 ENSRNOT00000079066 2 1 1 61 1 164436645 164436664 GTTCTGTGGTGCTGTAAGTG 59 164436603 164436627 CTCTAAATCAATCAGTATGCAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054586 ENSRNOT00000091998 2 1 1 60 14 7051665 7051684 TTCGGTCAAGGGTATACGAG 59 7051706 7051725 TTTAGAGCTTGTTTGGAGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053977 ENSRNOT00000091462 3 1 1 60 14 3492121 3492140 ACAACCCAGAGATCATTACC 57 3492080 3492099 ATCCTTCATGAGTTTGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053798 ENSRNOT00000080982 2 1 1 60 17 31301764 31301785 TACCACACCACATACTTATCCT 59 31301806 31301824 TTGACCAAAGACGATCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000061305 ENSRNOT00000082966 2 1 1 77 17 61052825 61052843 TCTTGTCCTTTGAGCTACG 57 61052766 61052784 AAATCTTCCTCACAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053830 ENSRNOT00000081749 2 1 1 60 10 94448397 94448417 TAAACCTACCCTGTGTACTCC 59 94448437 94448457 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111647.1 ENSRNOG00000039863 ENSRNOT00000061202 2 1 1 60 4 25617038 25617058 ACAGCAGACATAGATCTTCAG 57 25616998 25617017 CCTTGAGGTCTATCAGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0711.1 ENSRNOG00000051321 ENSRNOT00000076524 1 1 1 60 X 70222147 70222165 CAGCAGTAGAAGGAGGCAG 60 70222188 70222207 CTGTGGGTGTTTGAAAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058043 ENSRNOT00000082724 1 1 1 60 14 31554920 31554939 CGACCTTCTCTGAATAGCGA 59 31554879 31554899 ACACAGCTACTTGTATTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055084 ENSRNOT00000077978 3 1 1 61 2 238839430 238839450 CTCCTTGGTAGTGTATGTAGC 58 238839471 238839491 CTGTTTCCAAGTTCCCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053279 ENSRNOT00000079529 2 1 1 69 1 251889296 251889315 CAGTTCTTTCCTGTTGGGTG 59 251889347 251889365 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115341.1 ENSRNOG00000022490 ENSRNOT00000033253 1 1 1 60 3 9096292 9096310 AAGCCAGACATTGATGCCT 60 9096250 9096272 GATCATAGCCAACAAGTGTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057595 ENSRNOT00000083904 1 1 1 60 1 206801979 206801997 TGAGGTTTATCAGAGGCGT 58 206801937 206801959 GGTAGATGTCATCTAACTCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0667.2 ENSRNOG00000051325 ENSRNOT00000076454 1 1 1 60 X 65804085 65804103 ATTTCACCAATCACCTGCT 57 65804124 65804145 CACCATATTCAGTTCCATTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0667.2 ENSRNOG00000051325 ENSRNOT00000076454 2 1 1 60 X 65804089 65804107 CACCAATCACCTGCTTGAG 59 65804125 65804149 GTATCACCATATTCAGTTCCATTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061332 ENSRNOT00000078107 3 1 1 93 14 21557847 21557866 CCAATGAGGTTTATCCGAGG 58 21557773 21557791 GCTGTGTAAGGTAGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048303.1 ENSRNOG00000049272 ENSRNOT00000071563 3 1 1 138 5 71467635 71467662 GACTCAATGAAGAACCTAAGGA 58 71467758 71467779 CTTGTATGCCTATGGGTATCTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000055017 ENSRNOT00000087281 3 1 1 60 1 143658418 143658437 CTTCTTAAGGCTCTGCACTG 59 143658377 143658396 TGACCACTGAGTAGTTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003049.1 ENSRNOG00000037364 ENSRNOT00000056539 1 1 1 60 1 94988698 94988716 AAGGGAGGTTATGGAGGAG 58 94988740 94988758 CCTTTGTGTCCACAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563091 ENSRNOG00000052444 ENSRNOT00000084021 1 1 1 60 4 28308674 28308695 CAAACCAAACACCTAGATTTCC 58 28308635 28308658 GATCAAACTCTAGTACAGCAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054619 ENSRNOT00000079500 3 1 1 61 10 33892522 33892541 TATAGATGTGGTTGCTCTGC 58 33892560 33892583 CACTGATCATAGACATAACCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060227 ENSRNOT00000087216 2 1 1 60 1 53435023 53435041 TGGAGTGGATGATCCTGAG 58 53434981 53434999 CAAATTTGCGTGTCATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110306.1 ENSRNOG00000053603 ENSRNOT00000084656 3 1 1 85 7 139784345 139784364 CGATTCAGTGCAGCAAGAG 59 139782689 139782707 TGAACTCAGTCACTGTGCT 59 Novel Rattus norvegicus 81 AABR07065049.1 ENSRNOG00000036502 ENSRNOT00000054610 3 1 1 60 6 106143521 106143545 GAGTAAGATATACTGTACACATGGG 59 106143563 106143581 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004397.1 ENSRNOG00000030679 ENSRNOT00000048584 2 1 1 60 1 141214507 141214528 CGGAAGTGGTATTATAATGCAG 57 141214547 141214567 TTGTGTCATCTCGCATTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056605 ENSRNOT00000085100 1 1 1 60 1 76129692 76129710 ACTAGTGGGCAGAAAGAGG 59 76129731 76129752 CCCTCAGTTGTTCATAAGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053734.1 ENSRNOG00000033913 ENSRNOT00000050172 1 1 1 60 3 122818130 122818151 AAGGACTATGGCAAAGAATCTC 58 122818169 122818190 TCTTGCATTTGAAGTACTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012012.1 ENSRNOG00000053134 ENSRNOT00000075009 1 1 1 83 2 182113783 182113801 TTCCAGCTCTTTAGGCAGG 59 182113714 182113736 CTGGCTTAGTGAAGAGGCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053316 ENSRNOT00000091153 2 1 1 60 1 208830919 208830940 GATCATTTCTTAGTCAAGGGCA 59 208830880 208830899 TGGAGTTCTATCAACAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053316 ENSRNOT00000091153 3 1 1 60 1 208830919 208830940 GATCATTTCTTAGTCAAGGGCA 59 208830880 208830900 TGGAGTTCTATCAACAGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041968 ENSRNOT00000063721 1 1 1 78 4 50674116 50674134 GATCTTGGTGGCTAAGCAG 58 50674056 50674074 CTTGTTCTCATGGCTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029918.1 ENSRNOG00000057831 ENSRNOT00000080593 1 1 1 80 10 60199588 60199609 TGCTCAAGTTGTGTTCTGAC 59 60199649 60199670 TGAATGGGATGACCATAATGAG 58 Novel Rattus norvegicus 81 AABR07015080.2 ENSRNOG00000059586 ENSRNOT00000079916 3 1 1 61 14 46653359 46653377 AGAGGGTGTAAATCTCGCG 60 46653402 46653420 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000051415 ENSRNOT00000082279 3 1 1 60 1 31978191 31978210 CACTAAGCCATTGAGAAGGG 58 31978150 31978168 ATATGTTGCCACTTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053632 ENSRNOT00000084607 2 1 1 60 4 166663781 166663799 TGGTAGATCACTTGGCTCG 59 166663739 166663758 TCACATTAATTCTCGCAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000055611 ENSRNOT00000084467 2 1 1 60 1 88411753 88411771 TCACTGCCTGTTCTACCAC 59 88411711 88411730 ACGGATGACAGTTTCTATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052742 ENSRNOT00000084988 3 1 1 75 12 46863297 46863315 ATGAGGTTTATCCGAGGCG 60 46863240 46863259 TATATTGCAAGTCGTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000054708 ENSRNOT00000088778 1 1 1 62 3 35389853 35389874 GATTGATCACAGTCAGTTACAG 57 35389812 35389830 GAGTAGTGAGAAGCAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057841 ENSRNOT00000085645 1 1 1 60 2 112668985 112669003 TCACAAAGGTGGTTCTCCC 60 112669024 112669045 AAAGTTTAGCCTATCCCAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA2 ENSRNOG00000051850 ENSRNOT00000082978 2 1 1 60 2 211344062 211344085 GATGAATTGATCAGATAGACGAGG 59 211344025 211344043 GAATCGCCTCGGTAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060403 ENSRNOT00000089786 1 1 1 60 2 54697621 54697640 ACATGTGCATCAGTAAGTGG 58 54697660 54697681 AGGCAGAATACTGAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015719.1 ENSRNOG00000005077 ENSRNOT00000006734 2 1 1 60 14 72259801 72259822 TTCCAGGTGTTGAATAATCCTC 58 72259842 72259861 TAGAGAAGGATGACCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060997 ENSRNOT00000087770 2 1 1 60 5 69035770 69035792 GGAACGATACAGAGAAGATTAGC 59 69035732 69035750 GGTCATGAATTGGCGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056864 ENSRNOT00000081238 3 1 1 71 1 261223205 261223224 AGTCTTTGAGTTCACTTGCT 57 261223257 261223276 GCATGTCATCCTTGCATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059038 ENSRNOT00000089668 1 1 1 60 14 50805340 50805358 ACAGGTCTTCAGTCAAGGG 59 50805298 50805320 CTTGTGTTGAGATTCTATCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059038 ENSRNOT00000089668 3 1 1 60 14 50805339 50805357 CAGGTCTTCAGTCAAGGGT 59 50805297 50805319 GCTTGTGTTGAGATTCTATCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059637 ENSRNOT00000080375 1 1 1 60 1 267483404 267483423 GAGTCTATGTCTACGCTCAG 57 267483443 267483464 TGGTAGGCTGTTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061255 ENSRNOT00000090995 3 1 1 60 1 85051974 85051994 GTGAACGACACAGAGATTAGC 59 85052016 85052034 GACGCCTCAAGTTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055710 ENSRNOT00000086108 3 1 1 61 14 52485803 52485822 TGTGTCAGTAGGTTGCAGAG 60 52485761 52485780 TTCAGATGCCCATAGGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000084349 2 1 5 81 2 123562585 123564851 TGTTTGGCTTCTTGTTGACAG 60 123564891 123564912 CCAGACTTCATTGGCTAATCAG 59 Novel InUTR Rattus norvegicus 81 5S_rRNA ENSRNOG00000045263 ENSRNOT00000070530 3 1 1 61 12 26725708 26725729 CTAGCACATTTGATCCCATCTG 59 26725751 26725769 CAGTGCTAACCAGGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000055643 ENSRNOT00000089117 1 1 1 60 12 6389220 6389239 ATTCCCTCTCCAAAGGACTG 59 6389261 6389280 CTTTCTTCCAAGTTGCTACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050757 ENSRNOT00000073405 2 1 1 60 12 25307577 25307596 ATCTCAGAAGCTAAGCAGGG 59 25307536 25307557 CCTAATACTTCCTGGGTGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 1 1 1 60 6 93357155 93357180 CATATCTAGATACATGGGACTGTG 58 93357198 93357217 AAATGAAGAGTCACGAAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055645 ENSRNOT00000086593 3 1 1 60 6 87391966 87391984 CTAGAAAGGAGGGAGGCTG 59 87391924 87391944 AGTCACTCAGATGTTCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000060157 ENSRNOT00000082867 1 1 1 60 14 2861588 2861608 CAAACTCGATCACTAGCTCTG 59 2861548 2861566 CTCTAGCAAACCTGGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056382 ENSRNOT00000090631 2 1 1 76 14 86802607 86802625 CATTCCTACAGTGCTTGCC 59 86802549 86802569 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055725 ENSRNOT00000089684 1 1 1 60 6 12054026 12054048 GGCAGGACATGTATTAGAAATGG 60 12053988 12054007 TACGTGTTATCCTTGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004996.1 ENSRNOG00000041603 ENSRNOT00000063356 2 1 1 95 1 173672484 173672502 ACTTCAAGTCCTCTGACCT 58 173672559 173672579 CGTATGTGCACATGTATACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000058441 ENSRNOT00000086402 1 1 1 60 1 228177905 228177925 CCTTGACAAGAATGGAAGAGG 59 228177944 228177965 CTGCACTAAGCATTTGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065363.1 ENSRNOG00000061478 ENSRNOT00000090405 1 1 1 89 6 124210168 124210186 TAATTCTCCTGCTGCTCCC 59 124210239 124210258 ATCTGCCAAGACAGCAGAG 60 Novel Rattus norvegicus 81 AABR07009052.1 ENSRNOG00000049844 ENSRNOT00000072419 3 1 1 68 2 85818925 85818943 GAGATCCAGGTGTAAGGCA 59 85818975 85818993 ATGGTATCACCCACAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108295.1 ENSRNOG00000059430 ENSRNOT00000083575 2 1 1 60 3 72403396 72403419 CAGCTTACTAAAGGAATACCACAG 59 72403359 72403377 TCCACTGTCTTCTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067976.1 ENSRNOG00000057942 ENSRNOT00000077342 1 1 1 80 9 74960339 74960358 GGTAAGAAGTCCTGCAACTG 59 74960400 74960435 GGACACCATGATACACAGAG 58 Novel Rattus norvegicus 81 AABR07006591.1 ENSRNOG00000056301 ENSRNOT00000084204 2 1 1 69 1 241771597 241771615 AGAGACATCTCTGGCTGTC 59 241771650 241771668 GTTTCAGAGTGTGGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059040 ENSRNOT00000083583 3 1 1 62 10 93368835 93368853 CATCTGCCACACTGTTGAC 59 93368879 93368897 GGACACATGCTTAGCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061302 ENSRNOT00000087596 2 1 1 60 1 157541780 157541799 TTTGTCCACCTGCATATTCG 59 157541739 157541758 TTCCTCCTCAGTCATTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000053533 ENSRNOT00000085450 3 1 1 60 1 252923335 252923354 AAGTGATTGTAGGTTGCCAG 58 252923294 252923312 ACTTTCTGCATCCTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017748.2 ENSRNOG00000053763 ENSRNOT00000090632 1 1 1 80 15 30621417 30621613 AGATTTGCTGGGTGAAAGGA 60 30621655 30621674 TCAGAACAGAACTGGTTCCC 60 Novel Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 3 1 1 61 1 20332012 20332031 CGGAAGCAGGAGACATAGG 60 20331969 20331989 TGCATCTGATAAGAAAGCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044065.1 ENSRNOG00000028578 ENSRNOT00000030142 2 1 1 80 19 54872629 54872650 GCCAAATGTGTAACAATCATGC 60 54872373 54872589 AATAGTGGCCTCTTAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC106505.1 ENSRNOG00000042948 ENSRNOT00000067348 3 1 1 84 1 169160107 169160134 GCAGTTCATACTGCTCTCCA 60 169160042 169160060 GTGTGGACACAGAGACTCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000055907 ENSRNOT00000091902 1 1 1 60 3 20431052 20431073 ACAATACAGAGAACTAGCATGG 58 20431013 20431034 GAATGCTTCATGAGTCTATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.3 ENSRNOG00000050314 ENSRNOT00000072390 3 1 1 61 2 231875229 231875248 CCACTTAAACGTGGTTGTCC 60 231875272 231875290 CACCCAAACATGGAAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059829 ENSRNOT00000088708 3 1 1 61 10 20434382 20434401 CTGGCAAAGGTGTAACATCC 59 20434423 20434443 GCCACATCAGTAGAATCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010575.1 ENSRNOG00000051881 ENSRNOT00000079366 2 1 1 85 2 141078565 141078585 GAAGTTATGTGATGGGAGAGG 58 141078499 141078519 AAACAAACAAGAGTCTCCCT 57 Novel Rattus norvegicus 81 AABR07058102.1 ENSRNOG00000059201 ENSRNOT00000079389 2 1 1 82 7 100335282 100335456 CGGGACCACAGAAATAGCA 60 100335218 100335236 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 AABR07071898.1 ENSRNOG00000056095 ENSRNOT00000090687 2 1 1 167 1 89551355 89551378 CTAAGTCTCCACTTCTTACCCT 59 89551209 89551227 TCCACTGCAGAACTGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 Dppa1-ps1 ENSRNOG00000028544 ENSRNOT00000037099 2 1 1 60 12 4516888 4516906 TCTCCTACTCCTTCTCCCA 58 4516927 4516948 CCAAAGCTGATCTGATGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058025 ENSRNOT00000078242 3 1 1 77 1 239184575 239184593 TAGAGCATTGCAGATGTGG 58 239184516 239184535 GAGCGTAGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000058594 ENSRNOT00000080262 1 1 1 67 6 116905062 116905083 AGTAGGAATGTATCCAGAACAC 57 116905016 116905034 TCTACTAGAAGGCTGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058944 ENSRNOT00000084801 2 1 1 61 3 154849477 154849495 TGATACTGCAGGGAGAGGA 59 154849434 154849452 GGATAAGTGTGGGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013591.1 ENSRNOG00000060967 ENSRNOT00000083768 2 1 1 68 2 245325950 245325968 AGGAGGATCATCGCTTCTC 59 245325900 245325919 GAATGGATACCTGATCCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060877 ENSRNOT00000081491 3 1 1 60 9 26957091 26957110 GAGAGGAGAAAGGCTACGTC 60 26957050 26957069 GAGGACCAACTAATAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055373 ENSRNOT00000091564 1 1 1 98 5 133927451 133927469 TGTCTTTCCCAGGACAAGG 59 133927371 133927392 AGGAGAACATGAACATAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050116.1 ENSRNOG00000056863 ENSRNOT00000081107 2 1 1 60 5 152070830 152070853 GGAGAAGAATCTGAAAGTGAAAGG 60 152070793 152070813 AGTGATTCTCAGTGTCTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054036 ENSRNOT00000084215 1 1 1 77 5 138029504 138029522 TAGAGCCACTGCAGATGTG 60 138029563 138029581 AGGGCAGACACAACTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057625 ENSRNOT00000078387 1 1 1 60 6 83242298 83242316 CACAAGTAGCTGCACTCCT 60 83242256 83242275 ACTACCCTACGTTCCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099183.1 ENSRNOG00000055357 ENSRNOT00000080153 3 1 1 224 10 87503533 87503551 TAGCTTCTGTGGCTTTCCC 60 87503291 87503310 CTAGTCTGACAGCAGGTAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052084.1 ENSRNOG00000048601 ENSRNOT00000075631 3 1 1 65 3 35661220 35661238 TCTGCACCTTCGAAGATGG 60 35661173 35661192 TTATCGTGCTTTCTTTCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055576 ENSRNOT00000079467 2 1 1 60 3 121401859 121401878 GTCACATGCATGTCAATAGG 57 121401901 121401919 GTTAGAACGCAGCAGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059853 ENSRNOT00000086327 3 1 1 60 6 73437910 73437932 GATACAGAGAAGATTAGCATGGC 59 73437872 73437890 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060957.1 ENSRNOG00000054012 ENSRNOT00000082501 1 1 1 90 4 101687368 101687766 GATTCAGGGAACCAGTGGT 59 101687820 101687838 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07055682.1 ENSRNOG00000025340 ENSRNOT00000034404 1 1 1 80 7 7840097 7840120 CAGATAGTGATAGTTTGTGCAGTG 60 7840039 7840063 GGTCTTGATTATACAGATGGAACG 60 Novel Rattus norvegicus 81 SNORD22 ENSRNOG00000056397 ENSRNOT00000079816 1 1 1 90 1 224923863 224923881 TCCTGTCCTAGCTCCAGAG 60 224923934 224923953 CTCAGACAGTTCCTTCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.3 ENSRNOG00000059214 ENSRNOT00000058446 2 1 1 92 4 101949324 101949730 TGGATCCAGGAAACCAGTG 59 101949786 101949804 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07008890.1 ENSRNOG00000047140 ENSRNOT00000072080 2 1 1 114 2 77425888 77425908 TTGGACCAGAGAAACACCT 59 77425792 77425816 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052605 ENSRNOT00000090986 1 1 1 60 5 118553603 118553623 ATACAGAGATTAGCATGGCCC 60 118553645 118553663 ATATGGAACGCTTCACGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057525 ENSRNOT00000090274 2 1 1 61 14 58613208 58613230 GAACGATACAGAGATTAGCATGG 59 58613251 58613269 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054412 ENSRNOT00000081393 1 1 1 60 5 159609539 159609562 GATACAGAGAAGATTAGCATGACC 59 159609580 159609599 CAACACTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057276 ENSRNOT00000087010 3 1 1 60 2 62094690 62094711 ATACAGGGAAGATTAGCATGGT 59 62094730 62094750 GGAACCCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058228 ENSRNOT00000083874 3 1 1 60 2 205880384 205880407 TCTGATCTAGTTGTCTAGACATGG 59 205880347 205880366 GAGGGAAGTATGTGGAGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061725 ENSRNOT00000086558 3 1 1 60 1 150690422 150690443 TGGTATCTTCTTCCTTCCTCAC 59 150690462 150690482 CACTGAGAATGGCGATTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059327 ENSRNOT00000083913 2 1 1 60 1 116758192 116758212 CAACAGAAAGTCAAGAACAGG 58 116758152 116758172 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054660 ENSRNOT00000090290 1 1 1 60 10 111037514 111037536 GTGGTGTTCTTATATCAGTCAGG 59 111037553 111037574 CAAGCTATGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060622 ENSRNOT00000079486 1 1 1 60 10 65547385 65547406 ATACAGAGAAGATTAGCATGGC 58 65547346 65547365 TGAAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000060473 ENSRNOT00000087310 1 1 1 60 1 274674904 274674923 GATAGGAGCGGTTATACGCA 60 274674943 274674964 CTTCATCTCCGTGTACAATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059425 ENSRNOT00000081295 1 1 1 60 1 198235277 198235295 GAGAAGATTAGCATGGCCC 58 198235319 198235337 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053378 ENSRNOT00000086822 1 1 1 60 13 63561849 63561870 ATACAGAGAAGATTAGCATGGC 58 63561890 63561909 AGAACGTTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053378 ENSRNOT00000086822 2 1 1 60 13 63561850 63561870 TACAGAGAAGATTAGCATGGC 58 63561890 63561910 GAGAACGTTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.2 ENSRNOG00000054681 ENSRNOT00000091830 1 1 1 81 17 89773062 89775069 ACTCACAGAGGAGAAATTCTC 57 89773001 89773021 GCACCTTGTTGAAGAATAAGG 58 Novel Rattus norvegicus 81 AABR07037058.1 ENSRNOG00000053827 ENSRNOT00000081308 3 1 1 135 X 11082209 11082235 TCCTAATTTCACCTTTGAGTGC 59 11082329 11082349 TACCAATTCCAAGTACCAAGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058789 ENSRNOT00000088518 1 1 1 60 10 36724043 36724061 GCAGCAACATCTGTCACTC 59 36724085 36724103 GCCCAGTCAGACAAATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290,ENSRNOT00000031927 2 2 3 90 X 73504777 73504795 AGACAACTGCCAGACAGTC 60 73504848 73505718 TCATTAAGCTGTGCCATTGC 60 Novel Rattus norvegicus 81 Rn60_20_0043.4 ENSRNOG00000056541 ENSRNOT00000083748 2 1 1 60 20 2178751 2178773 GACATATTCCTTCTGACTCTGAC 59 2178791 2178811 ATGAATGAACAATGTGGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0043.4 ENSRNOG00000056541 ENSRNOT00000083748 3 1 1 60 20 2178750 2178771 GGACATATTCCTTCTGACTCTG 58 2178792 2178810 TGAATGAACAATGTGGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053176 ENSRNOT00000083101 3 1 1 60 13 94767442 94767463 CAAACAAGCCTCAAATGTATCC 58 94767403 94767422 GTGGGTTTGGTAAATGACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028768.1 ENSRNOG00000060274 ENSRNOT00000091937 1 1 1 60 17 85500312 85500330 ACAACAGCAACAACAGCAG 60 85500352 85500372 TGAATGACCTTAGTGTTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028768.1 ENSRNOG00000060274 ENSRNOT00000091937 3 1 1 61 17 85500312 85500330 ACAACAGCAACAACAGCAG 60 85500353 85500373 GTGAATGACCTTAGTGTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056282 ENSRNOT00000077747 3 1 1 60 10 6694420 6694439 GTGAAGTCAGTCTAGGAGGT 58 6694459 6694480 CCTTGAAAGAAGAATGGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058607 ENSRNOT00000089430 1 1 1 60 5 106328540 106328558 ACATGTGTAGGTGGCAGAG 59 106328580 106328600 TTCCTAAGTTGGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000083333,ENSRNOT00000085393 3 2 4 62 X 73460260 73460279 GAAAGACGGGAGTACTTCAG 58 73460869 73460890 TCATCTTGAGTTAATGGAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028970.2 ENSRNOG00000056130 ENSRNOT00000080445 1 1 1 98 10 1214860 1214878 CCCACTCTGAACGAAAGGA 59 1220434 1221007 CTTATTATATCCTGTGCTCACAGAC 59 Novel Rattus norvegicus 81 AABR07029803.1 ENSRNOG00000057038 ENSRNOT00000089390 2 1 1 80 10 52023657 52023680 GAGATTTCACCTCACATGCG 59 52023596 52023615 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07072440.1 ENSRNOG00000033030 ENSRNOT00000042119 1 1 1 60 15 18532466 18532484 ACAGGTGAACTCGGAAGAC 59 18532424 18532444 ATTGGTCCTAATAGCTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058618.1 ENSRNOG00000049992 ENSRNOT00000070829 1 1 1 60 7 128017779 128017798 GAAATGCCTCCATGAGATCC 59 128017738 128017762 CTCCTAGCCTTTATCACTAATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050378 ENSRNOT00000074028 3 1 1 60 18 29968535 29968554 TTAGCCCAAGTCTTACACCC 60 29968576 29968595 TCTCCAACCAGTTTGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059394 ENSRNOT00000089300 2 1 1 60 14 46687018 46687036 GATGAAGAACGCAGCTAGC 59 46687058 46687078 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020711.1 ENSRNOG00000050665 ENSRNOT00000075571 1 1 1 60 13 36335086 36335104 TCCTTTCTTCTTTGCCTGC 58 36335044 36335062 GGAAGTCCAAGGATCTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059648 ENSRNOT00000091425 3 1 1 62 6 66031644 66031662 GGCTGTTCTGTCACATGTG 59 66031685 66031706 TTGAGGGTAGACATAGTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059603 ENSRNOT00000082534 2 1 1 60 13 58233355 58233375 ACAGAGAAGATTAGCATGGTC 58 58233394 58233415 TTATCTTTCTGCTGAAGACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057373 ENSRNOT00000078763 3 1 1 60 13 32174749 32174770 GTCAAGGGTAGATGAATAGCTG 59 32174789 32174809 GACCTTGAGAGTTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061278 ENSRNOT00000088859 3 1 1 60 10 57895862 57895882 AAATAGAGGAGGATCAAGGGT 58 57895902 57895922 TTGTTTAGAGGTTCTAGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060959 ENSRNOT00000086837 1 1 1 60 3 66285403 66285423 AAACAGATGAAGAGCTTGACC 59 66285442 66285463 GTGGAATACACCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000057313 ENSRNOT00000080796 1 1 1 96 3 164163731 164163749 TAAGTCAGCCTGTCCTAGC 59 164163653 164163671 TCAGACAGTTCCTTCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053911 ENSRNOT00000080515 2 1 1 60 20 45874493 45874514 ATGATCTAGTTCTGTCACTCCA 59 45874534 45874553 CATCTAACCAGCCGTATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058806 ENSRNOT00000079793 2 1 1 60 3 53529460 53529481 TGTCATACTGCATCAGTAGGAG 60 53529496 53529520 AACACTGAGTATAGTAGACATACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000051561 ENSRNOT00000085904 3 1 1 60 1 200156825 200156843 CAGTTCAGGGCAATTTCCC 59 200156783 200156802 CCTCAGCCAATTTCAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052031 ENSRNOT00000088832 2 1 1 60 5 2828907 2828927 CTCGGACTTCTACCTAAGCTC 60 2828867 2828887 GTGCCTGTTTCATACAAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056318 ENSRNOT00000083994 3 1 1 62 7 8737043 8737061 AGTGTTGCAGTTGTGACTG 59 8737083 8737105 GTAGAAATAGCCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051537 ENSRNOT00000077860 3 1 1 60 1 245891064 245891085 TGACTGTTCCTTAGCATTTCCT 60 245891104 245891124 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049353.1 ENSRNOG00000008953 ENSRNOT00000011847 2 1 1 60 5 118226337 118226355 TCCGCTCGTGATTTACCTG 60 118226294 118226312 TGATGGTTCAGGCATTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053385 ENSRNOT00000089764 3 1 1 61 13 66603965 66603984 GTGCTATGTCACATGTAGGT 57 66603923 66603941 TCAGGTGTTCAGAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD77 ENSRNOG00000060075 ENSRNOT00000085413 3 1 1 60 13 78854988 78855007 AACATAGTTCAGCAGACGTG 58 78855026 78855048 TACATCAGATAGGAGCGAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.2 ENSRNOG00000056727 ENSRNOT00000088206 2 1 1 61 7 67116746 67116764 CTCAGGATGAGGTGGAGTG 59 67116703 67116722 CTCCTTGAGGATGAGGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052610 ENSRNOT00000091875 1 1 1 60 10 69763778 69763797 TGAGTCAAGGGTTTAAGGGT 59 69763737 69763756 TCTGAGAGTTTGCTTTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061368 ENSRNOT00000084326 2 1 1 60 5 148105191 148105213 GGAGATAACCACTATCAAGAAGG 58 148105153 148105174 CCTGCGTATAATAGATCAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055013 ENSRNOT00000091695 1 1 1 60 13 47876687 47876705 AAGTAGTGCTTTCTTGCCA 57 47876645 47876664 ACATATTCCCATGTGTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.1 ENSRNOG00000047073 ENSRNOT00000074732 2 1 1 60 7 67140034 67140053 GTTAGCTGGATGTGGTACTG 58 67139993 67140011 CATCCTGCCTATACCTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058936.1 ENSRNOG00000052450 ENSRNOT00000089690 3 1 1 112 7 144725349 144725369 CCAGAATTCAGAGCTCTATCC 58 144725447 144725465 TCTACAGAGCATCGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC499229 ENSRNOG00000045560 ENSRNOT00000073421 3 1 1 60 1 173255289 173255310 CTACAGTCACAAGAATCAGCAG 59 173255328 173255349 TCTAATGAAGGACACGATAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060209 ENSRNOT00000090567 2 1 1 60 13 16320237 16320258 TATATGAGTAGCTGTGCTTCCC 60 16320278 16320297 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057737 ENSRNOT00000077194 1 1 1 67 3 175450356 175450374 GTTTCTCCAGATTGTCGGC 59 175450403 175450423 CTGCTACCACAAATTATGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057019 ENSRNOT00000079615 3 1 1 60 19 20431876 20431894 TGTGACGTTGAAGAAAGCA 58 20431834 20431855 CGTACGTTTGATGGAAGATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000075961 1 1 2 72 2 157068879 157068897 GAGAAATTAGCCGCAGTGC 60 157068440 157068458 AAAGTTGCCTCAGAAGAGC 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000058889 ENSRNOT00000081541 1 1 1 60 1 251058169 251058188 ATGATCAAACGGGAAAGGTC 58 251058128 251058147 TCAAATAACTCCAGACCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2786.1 ENSRNOG00000051329 ENSRNOT00000076564 2 1 1 97 2 259914259 259914912 GAGATGGCACTGAAGATGC 59 259914972 259914991 GTATTGTATGTGGAACGGGT 58 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000055551 ENSRNOT00000077812 1 1 1 60 19 34031266 34031284 GGCTGGTCTAAAGGTAGTG 57 34031307 34031326 AGGACTTCAATCTGTAACGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053664 ENSRNOT00000081363 2 1 1 76 18 83736452 83736470 CTTATCCATTGCACTCCGG 58 83736509 83736528 CCACAAATTATGCAGTCGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056919 ENSRNOT00000077870 2 1 1 60 6 81835444 81835462 ATCTCACTCAGGTTGTGCT 59 81835486 81835504 TATTCAGTCGAGTTTCCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000051692 ENSRNOT00000082406 2 1 1 60 7 80815628 80815646 TGGCTGAGTGAGTAAGACC 59 80815586 80815607 AGTAATGAACCATGCTAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052805 ENSRNOT00000086601 1 1 1 60 13 100177992 100178010 TCTGTCATCCCATTGGTCC 59 100178032 100178052 TGAACATCTGCTTATCCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018627.1 ENSRNOG00000038122 ENSRNOT00000058010 1 1 1 60 15 66165748 66165768 CAGATCTTGCCTAAGGATCAG 58 66165787 66165808 AGGGTTCAAGGTAGAATTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.4 ENSRNOG00000061301 ENSRNOT00000087532 2 1 1 60 13 52265993 52266011 ACGTCTTGCAGAAATTGCC 60 52265951 52265971 CAGTAAGTGCTTGTCAAACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042302.1 ENSRNOG00000057365 ENSRNOT00000091082 1 1 1 60 X 152224787 152224807 CTTACAACTGTTTGCAGAGGA 59 152224747 152224766 TTTGCGATGAGAACTGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000060097 ENSRNOT00000091851 1 1 1 60 18 70372892 70372910 CCTTGGCCTTGACTTTGTG 59 70372932 70372952 GGACACAGTACTTTCAATGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053519 ENSRNOT00000078287 1 1 1 60 13 9637996 9638015 GGAACTTCCAAATAAGCACC 57 9637955 9637974 GAGTCATACACCATGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000059035 ENSRNOT00000081696 3 1 1 60 18 49568724 49568745 TATATCAATCAGTGGCAGAGCA 60 49568766 49568784 AGCTAGGCATCAAGCTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059187 ENSRNOT00000091766 1 1 1 60 15 33275491 33275513 GATACAGAGAAGATTAGCATGGC 59 33275453 33275471 GAACGCTACACGAATTCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061759 ENSRNOT00000090807 2 1 1 60 15 45810434 45810456 GAAGAAAGAGGCTATGTCTACAC 59 45810396 45810416 CTACTGATCACTCAGATGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019412.1 ENSRNOG00000037886 ENSRNOT00000057567 2 1 1 88 15 104449346 104449364 ATCTGTCTGTTTCCCGAGC 60 104449413 104449435 GAAATCAATGCAACAGCAAAGG 60 Novel Rattus norvegicus 81 AABR07019412.1 ENSRNOG00000037886 ENSRNOT00000057567 3 1 1 90 15 104449345 104449363 CATCTGTCTGTTTCCCGAG 58 104449417 104449436 GGAAATCAATGCAACAGCA 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000061581 ENSRNOT00000090289 3 1 1 60 X 144720192 144720213 TAGAGGAAGTCTTCAGTCAAGG 59 144720153 144720171 TTTGGAGGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA14 ENSRNOG00000053462 ENSRNOT00000086085 1 1 1 60 19 59872508 59872527 GAATGCTAGACAAAGTGCGG 60 59872467 59872485 TAAGACTGAGCCACGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000056759 ENSRNOT00000081439 3 1 1 80 15 58025906 58025924 ATCCTTTCATGGTGGGAGC 60 58025844 58025865 GGTTACTAGTTGTAAGTGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036200 ENSRNOT00000054323 3 1 1 60 13 58460949 58460968 CCGATCTCATCTGATCTCGG 60 58460988 58461009 TCTCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035961 ENSRNOT00000054084 1 1 1 60 13 55895727 55895745 ATGTGCCTGATCTCATCTG 57 55895685 55895704 TCTAAGTACTAACCAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058879 ENSRNOT00000089412 2 1 1 60 19 56323251 56323269 TGGCTCTGTCATTTGTCAC 58 56323293 56323311 TGGCCAACTTAATCAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055467 ENSRNOT00000085952 3 1 1 60 20 19191579 19191598 AATCCAGATGTAAAGCCCAC 58 19191619 19191639 AGACACATCTGTTCAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053136.1 ENSRNOG00000060735 ENSRNOT00000091164 3 1 1 61 3 93648448 93648466 AGAGAAGCTGTGTCCTCTC 58 93648491 93648509 AAACAGGTCAGAGGATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055548 ENSRNOT00000077478 1 1 1 60 10 88679358 88679376 CTCTGGGTGTTTCCTTCCT 59 88679316 88679336 ACCCAGTATCATTCAAGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059101 ENSRNOT00000086388 1 1 1 60 4 98855118 98855137 ACCTGTCAGGGATATACCAG 58 98855077 98855097 CAATGAATATGCTTAGCCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057386 ENSRNOT00000078924 1 1 1 60 5 170919690 170919709 GATTCAGCTGATCCGATTGG 59 170919732 170919750 ACACATATGGAGCGGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051622 ENSRNOT00000092156 2 1 1 60 15 4027978 4027999 ACAGACTATTAGAAGGTCCCTG 59 4027939 4027958 AATATGCAGCACTTGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060150 ENSRNOT00000091289 2 1 1 62 15 83765903 83765921 CTTATCCGTTGCACTCCAG 58 83765859 83765879 AGCTGAATTTCCCATCATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055352 ENSRNOT00000088058 1 1 1 66 18 47273212 47273230 TTATCCATTGCACTCCGGA 59 47273164 47273182 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054456.3 ENSRNOG00000049208 ENSRNOT00000074770 3 1 1 60 3 154234740 154234760 ATGTGACAAACGAAGTAGCTC 59 154234700 154234721 CTCATCTCGTAGTTGGTAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054120 ENSRNOT00000082194 1 1 1 60 18 17811417 17811438 CTCTAAAGAAGCTACTGATGGG 58 17811378 17811398 GTTTGAGTGAGGAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055610 ENSRNOT00000083790 3 1 1 60 4 179966450 179966470 ATCTGTTATGCCATTGATCCC 58 179966491 179966510 GAAATATACGTAGGCAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036019.1 ENSRNOG00000051442 ENSRNOT00000079144 3 1 1 105 12 30662703 30665533 TGTACCCAGAGAATCTTTCTG 57 30665600 30665618 TTGTCTGACGTCTCTTTGC 58 Novel Rattus norvegicus 81 SNORA19 ENSRNOG00000059289 ENSRNOT00000084347 2 1 1 81 18 34418236 34418256 AACCAATGAGGTTTGACTGTG 59 34418296 34418317 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057105 ENSRNOT00000090607 3 1 1 60 3 176928439 176928457 AGTGCTTAGTTTAGCAGCA 57 176928397 176928415 CATCCTAGTACAGAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056815 ENSRNOT00000081001 1 1 1 60 18 74069182 74069202 CATTGCAATGTGATTGCTGTG 59 74069223 74069242 ACATACCTCTCCTCTTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055874 ENSRNOT00000077272 2 1 1 62 10 72895504 72895523 TAACAGGACTGATTCTGCTG 57 72895461 72895479 ATAGTGGTGAGGGAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051658 ENSRNOT00000091002 2 1 1 61 9 102542665 102542689 CTGTCACATATTCATCAGTAGATGG 59 102542628 102542646 TCAGAGCACTGGGTATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061875 ENSRNOT00000086457 2 1 1 60 5 48749446 48749465 CCTGAAGCTAAGTATGTGGT 57 48749405 48749423 TTGGTCTAAGAACCGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060304 ENSRNOT00000081369 2 1 1 60 3 45629314 45629332 TGAAATCGGAACGACACAG 58 45629356 45629374 ACCAATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000056736 ENSRNOT00000077141 1 1 1 60 10 47471480 47471499 GTGCTGCTCCTATATCAGTC 58 47471439 47471460 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060621 ENSRNOT00000081836 1 1 1 60 18 2725232 2725250 GAGAAGATTAGCATGGCCC 58 2725274 2725292 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058303 ENSRNOT00000081219 3 1 1 63 7 125509684 125509704 ACGATACAGAGAAGGTTAGCA 59 125509727 125509747 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056195 ENSRNOT00000085457 1 1 1 60 3 95997511 95997530 GAGTTGGAATAGGAGCTTGC 59 95997553 95997571 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052997 ENSRNOT00000081858 3 1 1 73 9 99150828 99150846 ATGCCAGAGTAACGGAGAG 59 99150882 99150901 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057317 ENSRNOT00000079352 3 1 1 60 18 81593949 81593968 CTTATCCATGGCAGTCTGGA 59 81593908 81593927 TGAAGTTTCCTGCATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028237.1 ENSRNOG00000018685 ENSRNOT00000025224 3 1 1 60 17 61331260 61331280 ACAGTTGATAAATCTCAGCCC 58 61331220 61331240 GGCTACACAATTTCACAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033920.1 ENSRNOG00000031634 ENSRNOT00000048199 2 1 1 60 11 44367514 44367533 GTGCGAGTGGAATTTATGGA 58 44367473 44367491 CAGGGCCTTTGATGTTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055262 ENSRNOT00000080640 3 1 1 62 7 60550071 60550091 AGACACGATACAGAGATAGCA 58 60550029 60550047 GAACGTTTCACGGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.3 ENSRNOG00000054322 ENSRNOT00000092000 2 1 1 74 16 26583540 26583561 ATGCATCCATAGTGGTGGG 60 26583596 26583617 GTGTGCAATTATAGTCACAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065651.5 ENSRNOG00000051694 ENSRNOT00000089387 1 1 1 103 6 138744341 138744443 TTCCAACCTGTGTCCTGTC 60 138744256 138744274 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07057678.1 ENSRNOG00000024507 ENSRNOT00000037006 1 1 1 63 7 83803070 83803089 CTGACAGTCTCCTTGATCTC 57 83803117 83803135 TTTGACTCAAAGGAGCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052961 ENSRNOT00000085433 2 1 1 60 X 44899665 44899687 GGAGATACTATGCTCATGAAGGT 60 44899704 44899725 TATACAGAGTGCAATGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055443 ENSRNOT00000088477 1 1 1 60 X 139963327 139963347 GGATGAAGATGAGATTAGCCC 58 139963287 139963306 AAATACAGATGGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053191 ENSRNOT00000080932 3 1 1 61 X 98935880 98935899 CCACATGTGCATCATAGGTG 59 98935838 98935859 AGTCAGAACACTGAACTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058828 ENSRNOT00000081385 3 1 1 60 7 13284707 13284725 AGGGTAAAGGAAGTCTCCA 57 13284749 13284767 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055048 ENSRNOT00000091582 1 1 1 75 6 104272175 104272198 GCTAAGTTCAGTGACACATATAGG 59 104272123 104272142 ATATCATCCATGCACAGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058360 ENSRNOT00000088631 1 1 1 60 15 13852691 13852709 CTGCTGTGTCATATGTGCC 59 13852649 13852673 CTGAGTATAGACATAACCTATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053066 ENSRNOT00000090464 2 1 1 60 15 3210351 3210372 GACAAACTCTCAAAGAACACAG 58 3210312 3210332 TAGACTAGTCGAAGAAAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058134 ENSRNOT00000080412 3 1 1 61 7 15377877 15377895 TGAAACAATACAGAGGCCC 57 15377919 15377938 TAATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054021 ENSRNOT00000082165 1 1 1 60 X 83121520 83121544 GACTAAGAAAGAATATCCTTCCTCC 59 83121562 83121580 GTGTAGCTTCAGGAGGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060447 ENSRNOT00000082563 1 1 1 60 5 151016635 151016656 CTAACATTGGAACGACACAGAG 59 151016677 151016695 ATTTGCGTGTCATCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000057605 ENSRNOT00000088011 1 1 1 63 10 74626808 74626826 TTCCTTCCCTCATGCAGTC 59 74626853 74626871 TGACAGGCTGGAATACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044722 ENSRNOT00000069989 1 1 1 60 6 64116345 64116364 CCCTGAACATGCTAGATCTC 58 64116304 64116325 TCTCATCCAAGTACAAATCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060394 ENSRNOT00000092046 1 1 1 60 4 98579967 98579990 GAACGATAGAGAAGATTAGCATGG 59 98580009 98580027 ACACTTCACCAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058535 ENSRNOT00000087296 2 1 1 60 20 7437478 7437497 AAGGGTAAAGGAAGTCTCCG 59 7437437 7437455 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059777 ENSRNOT00000091886 1 1 1 60 4 51986897 51986918 ATGATACAGAGAAGATCAGCAC 58 51986858 51986877 ACGCTTCATGAATTTGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.1 ENSRNOG00000052708 ENSRNOT00000090145 1 1 1 66 7 143224896 143224914 CATACTGGGCCTTGACCTC 60 143224944 143224962 CTCTCCATGGACAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125982.1 ENSRNOG00000045580 ENSRNOT00000073852 1 1 1 104 7 130408084 130408102 CAAGCCAGATGCGATTCTC 59 130408172 130408190 AGAGACTGATAGGCGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058368 ENSRNOT00000078564 3 1 1 69 20 45947773 45947791 CACCTGTGCATCTATGGGT 60 45947824 45947842 ATGTTCACAGGTCAGAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005779.2 ENSRNOG00000054418 ENSRNOT00000089740 2 1 1 60 1 198801439 198801457 GATCTACGAGATGGCTGCT 59 198801485 198801504 AATCTGAATTGGCTGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065589.1 ENSRNOG00000053429 ENSRNOT00000079092 2 1 1 60 6 135877822 135877840 GATCCAAGCCACTGAACCT 60 135877780 135877798 GTGGTCCGAGAATACCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055903 ENSRNOT00000086913 1 1 1 60 7 64952246 64952264 TCTGTACATGAATGGCTGC 58 64952288 64952306 TTGGGTTCTTGGGAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058279 ENSRNOT00000087523 1 1 1 60 4 85177763 85177783 TGTGACATAAATGTCAGTGGG 58 85177804 85177823 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000052604 ENSRNOT00000087916 2 1 1 80 13 56763958 56763977 GGTTCTGTAACCTGTTGCTC 59 56759408 56763915 TGCATGCTATTCCTTCACC 58 Novel Rattus norvegicus 81 AABR07032348.1 ENSRNOG00000049472 ENSRNOT00000075782 3 1 1 61 18 62248655 62248674 CTTGACCTCAGAGATCCACC 60 62248697 62248716 GTAGAGCACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031972.1 ENSRNOG00000046899 ENSRNOT00000072730 1 1 1 60 18 41434277 41434296 TATTCATTGTGGCCCTAGGA 58 41434236 41434254 TTTCTTGGTTCAACCACGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052496 ENSRNOT00000080728 1 1 1 60 18 53015921 53015939 AGCAGCGAATGGTACAGAG 60 53015963 53015981 CAAATTTGCCTGCCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054066 ENSRNOT00000080268 2 1 1 61 18 58224001 58224021 TTGGAACAGTACAGGGAAGAG 60 58223960 58223981 CTCATGAATTTGCATGACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060906 ENSRNOT00000078484 1 1 1 60 19 45848859 45848877 GTTGCACTCCAATATGCTG 57 45848817 45848835 GATGTGGTTGACTCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054190 ENSRNOT00000086664 2 1 1 60 11 85373439 85373461 GAAGGATACAGAGAAGATTAGCC 58 85373481 85373499 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058440 ENSRNOT00000084096 3 1 1 60 5 35285135 35285154 CAGCAAGGGTTTGTACAGAG 59 35285176 35285195 ACCCAATCTCAGGTCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034502.1 ENSRNOG00000036328 ENSRNOT00000054450 2 1 1 60 11 74222635 74222653 CCATAACCAGCACAGACTG 58 74222675 74222695 GCACTCAAAGAGATACTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053366 ENSRNOT00000083050 2 1 1 159 1 84940249 84950058 TGAGCCCAGATTTGGAGTC 59 84940108 84940129 CTGAATGTACTATAGCTGTGGC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000053417 ENSRNOT00000080256 1 1 1 96 18 80170904 80170922 TTCCGTGATCCAGAAGGTG 59 80170826 80170845 CGATGTGTTCGGTATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056081 ENSRNOT00000077538 2 1 1 60 18 8703265 8703286 AACTCACTAGAACCTCTAAGCA 59 8703226 8703244 GCCTTAACCACTTTCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031784.1 ENSRNOG00000061202 ENSRNOT00000086315 3 1 1 72 18 34661552 34661570 GATGCTGATTCAGGCAGTC 59 34661498 34661517 TATTAGCATCACCTGGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056867 ENSRNOT00000088354 3 1 1 60 3 11384152 11384171 ATGAGGTTCCCAAATGTGAG 58 11384111 11384130 AATATAGGCTTCCACTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095267.3 ENSRNOG00000060839 ENSRNOT00000083949 3 1 1 95 X 156228622 156228811 TAGTATCCTGGCCGTTAGG 58 156228869 156228888 TTTCTCATCACCAGGGAGAG 59 Novel Rattus norvegicus 81 AABR07043601.3 ENSRNOG00000049551 ENSRNOT00000072648 3 1 1 83 19 30820136 30821797 GTGACAATCCATGCATGCA 59 30820071 30820089 CTCGATGGTCACTGGACTC 60 Novel Rattus norvegicus 81 AABR07065165.1 ENSRNOG00000053619 ENSRNOT00000088043 1 1 1 60 6 112726769 112726789 ATTACTCACTGAGAGCATCCA 59 112726729 112726748 ATGTAAAGGAGGAGTCTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 1 1 1 99 1 222525745 222525763 CTCAGACCAAGGGCTTCTC 60 222525662 222525681 CACCCTTATCTTGGGAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053668 ENSRNOT00000089633 1 1 1 60 7 1625173 1625192 CTTAGCAGTGGATCACTTGG 58 1625215 1625233 TTAATTCTCGCAGCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027212.1 ENSRNOG00000057683 ENSRNOT00000081494 1 1 1 80 17 19538237 19538260 CTTCAACTATACCGTACCTATGCT 60 19538298 19538319 GGAACACAGAGTTCCATCCT 60 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000052975 ENSRNOT00000087166 1 1 1 60 7 92034040 92034059 TTACATGTGCATCAGTTGGT 58 92034081 92034100 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034413 ENSRNOT00000052536 3 1 1 60 11 41135399 41135420 ACCAGATTTCATTTGCTCTCAG 59 41135436 41135459 CTCATCCAAGTACTAACTAGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004134.1 ENSRNOG00000056928 ENSRNOT00000079160 3 1 1 80 1 126633128 126633153 CAATTAGAACAAAGCCAGTGG 58 126633068 126633087 CATAACCGACTCACTACAGG 58 Novel Rattus norvegicus 81 Xlr4a ENSRNOG00000055822 ENSRNOT00000091365 2 1 1 80 X 153079227 153079246 AATCTGGCCTTTGAAACTGG 59 153077618 153079186 AGATTTCTTACTAGGCCCTGG 59 Novel Rattus norvegicus 81 AABR07062289.1 ENSRNOG00000055734 ENSRNOT00000080471 2 1 1 197 4 166882501 166882522 GCTTCTGTCTATTGTTCTAGGA 57 166882324 166882342 AACGATGTCAGAGACACTG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA79 ENSRNOG00000058660 ENSRNOT00000086324 2 1 1 114 11 71799603 71799623 CCTTTAGATGTGGCACTAGGA 59 71799698 71799717 TGATCCCGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052779 ENSRNOT00000088015 1 1 1 60 11 1470648 1470666 GAGAAGATAAGCATGGCCC 58 1470690 1470708 AATATGGGACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095267.4 ENSRNOG00000061511 ENSRNOT00000088637 3 1 1 82 X 156153952 156154149 GTATCTTAGCTGTTAGGTGGAC 58 156153891 156153910 CAGGGAGAGTTGATCAAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059531 ENSRNOT00000077576 2 1 1 61 11 52947371 52947389 AGAGAAGACTAGCATGGCC 59 52947414 52947432 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061808 ENSRNOT00000092059 2 1 1 60 6 10897250 10897268 GGTTAGTGGTGATGGTCTG 58 10897208 10897226 ACACAGAGCAACGAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021080.1 ENSRNOG00000055999 ENSRNOT00000085493 2 1 1 71 13 56025843 56025862 TTAACACTTGTGAGCCTCTC 58 56025898 56025916 CTAGGGACTGACACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128800.1 ENSRNOG00000047810 ENSRNOT00000071606 1 1 1 62 19 38158757 38158775 TCCTCTTCCTCCTTCTCCT 59 38158799 38158819 CTACAAAGTATGGCAATCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0044.1 ENSRNOG00000051195 ENSRNOT00000076373 2 1 1 80 8 4364354 4375122 GGTTTCCAATGAGACAGATATGG 59 4375162 4375180 AGGCAGTGGATCTTCTCTG 59 Novel Rattus norvegicus 81 Rn60_8_0044.1 ENSRNOG00000051195 ENSRNOT00000076373 3 1 1 81 8 4364362 4375129 ATGAGACAGATATGGATCAGTG 57 4375171 4375189 GACTTCTCTAGGCAGTGGA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059892 ENSRNOT00000083000 3 1 1 60 9 76926319 76926338 GAGGCTATGTCTATGCTCAG 57 76926278 76926301 CATTAGGCTACTACTCATTGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060409 ENSRNOT00000085299 1 1 1 60 9 14262703 14262721 AAGGACCCGTGAGTATCTG 59 14262745 14262763 ACTTCAGAACTTGACTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056147 ENSRNOT00000080804 2 1 1 60 7 80491019 80491041 GGAACGATACAGAGAAGATTAGC 59 80490981 80490999 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056147 ENSRNOT00000080804 3 1 1 60 7 80491014 80491036 GATACAGAGAAGATTAGCATGGC 59 80490976 80490994 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.2 ENSRNOG00000052977 ENSRNOT00000078166 2 1 1 80 17 14554851 14556649 AGTGGAAGTCTACTGTTACCAG 59 14554792 14554811 CCATGAATTGTGGGTACAGG 59 Novel Rattus norvegicus 81 AABR07034498.1 ENSRNOG00000052877 ENSRNOT00000087747 1 1 1 60 11 73930955 73930973 ATGTCAAGCTGCACTACTG 58 73930997 73931015 GATGGATTCCTGACGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061016 ENSRNOT00000086071 1 1 1 60 6 59446022 59446042 TACAGGTGTGGCTTCTATGTC 60 59446064 59446082 AGTGTGACATAGCCTCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1362.2 ENSRNOG00000051304 ENSRNOT00000076363 1 1 1 81 1 135135850 135135869 GTAGCTGGTATGCTTCTGTG 59 135135912 135162480 TCATGTTCTCTTTCCAGACG 58 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052008 ENSRNOT00000082632 3 1 1 60 11 39194544 39194562 GTTGATGAAGAACGCAGCT 59 39194585 39194604 CATGATCAATGTGTCCTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.2 ENSRNOG00000058371 ENSRNOT00000091767 1 1 1 60 2 225025931 225025951 AGCCTAACTTCTGATCCAGTC 59 225025891 225025910 ACTTGTTGAAGTCAGTCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000060035 ENSRNOT00000079151 2 1 1 60 11 88049824 88049844 ATAAACTACCCTGTGTACACC 57 88049865 88049884 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000060035 ENSRNOT00000079151 3 1 1 60 11 88049824 88049844 ATAAACTACCCTGTGTACACC 57 88049864 88049884 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044448 ENSRNOT00000069715 1 1 1 60 11 58286602 58286621 TCTAAGGCCATACCACTCTG 59 58286641 58286662 GCTTAGCTTCTAAGATCAACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112440.2 ENSRNOG00000058234 ENSRNOT00000084680 1 1 1 75 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370602 93370625 GATCAGAACTTGACTATCTAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 1 1 1 69 1 99888385 99888403 TTCTGACCAGTCTGCTGAC 59 99888436 99889262 CACTGATGCCAATGCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042937.1 ENSRNOG00000052015 ENSRNOT00000081292 1 1 1 80 19 14951694 14953605 GCTCAACAACGTAATGAAGTC 58 14951634 14951654 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 AABR07042937.1 ENSRNOG00000052015 ENSRNOT00000081292 2 1 1 81 19 14951694 14953605 GCTCAACAACGTAATGAAGTC 58 14951633 14951654 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 snoU89 ENSRNOG00000052563 ENSRNOT00000084518 2 1 1 60 4 157233675 157233693 TTGGCCTACTGACTCTTGG 59 157233715 157233735 TCCAGATCTCACTAGTTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065532.1 ENSRNOG00000041530 ENSRNOT00000063283 1 1 1 62 6 133861041 133861059 ATTTGAAGGTGCGGTTGAC 59 133861083 133861103 GTAGACCATGTGTCCTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000057582 ENSRNOT00000080911 3 1 1 71 9 18106474 18106493 TGGAACATTGAAATTGGCTG 57 18106522 18106545 GGCTAGAAGTATACACGAATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054494 ENSRNOT00000083052 3 1 1 61 7 100118547 100118565 GAGAAGATTAGCATGGCCC 58 100118504 100118523 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048228.1 ENSRNOG00000054196 ENSRNOT00000091795 2 1 1 80 5 68209075 68209098 GAGATTTCACCTCACATGCG 59 68209014 68209033 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 2 3 4 152 1 134884919 134885451 GGTGTGCCATTCTGAAGAC 59 134873734 134878984 TCAAGCTGGGTGTAAATGC 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561,ENSRNOT00000076045 3 4 4 67 1 134885484 134885502 AGATGGTAATGTGGTTGCC 58 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000051422 ENSRNOT00000089618 2 1 1 62 9 32739973 32739994 CCAGGAATATTATGTGGCAGAG 59 32740014 32740035 TCATAAGTCAGAACCTTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001905.1 ENSRNOG00000057250 ENSRNOT00000090287 2 1 1 80 1 61787021 61787910 TCTTTGTAGAGAACCATCGC 58 61787952 61787971 CATGCTGATGGACAATATGC 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000043952 ENSRNOT00000069219 3 1 1 60 9 50874833 50874854 TCTATGGTCATACTTCCCTTGG 59 50874794 50874812 GATCCTACTTAGCGCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047089.1 ENSRNOG00000055063 ENSRNOT00000082188 2 1 1 84 5 18964143 18964162 TACCTCTTTGGCTTGGTCTG 60 18964203 18964271 CCAGTTTATTTCTAAGACTCTGACC 59 Novel Rattus norvegicus 81 AABR07014304.1 ENSRNOG00000057639 ENSRNOT00000084419 2 1 1 81 14 8598853 8598876 CACTGATGTTCTTAGTCCTTACAG 59 8598792 8598814 GGTTCTGTGTACCTTGAGGA 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000057420 ENSRNOT00000087871 1 1 1 60 7 105747470 105747493 GGTTTGTTCTTATATCAGTCAGGG 59 105747433 105747456 CAATCTAGGATGAGCAAAGTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065598.1 ENSRNOG00000012677 ENSRNOT00000016905 2 1 1 60 6 136474093 136474111 AAACCAAGGAACCAGAGAC 57 136474132 136474153 CCTTTAGAATCAGTTGCTACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064218.1 ENSRNOG00000053727 ENSRNOT00000089761 2 1 1 60 6 69619453 69619472 AATCCGGAAGAAGATTGAGC 58 69619495 69619513 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013583.1 ENSRNOG00000051598 ENSRNOT00000072902 2 1 1 80 2 244926736 244926758 AGATTTCACCTCACATGCG 58 244926674 244926693 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052727 ENSRNOT00000078045 1 1 1 60 4 2660543 2660564 CTCACAATTCCATTTAGGTCCA 59 2660585 2660603 AGGAAGGTCACTATCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058553 ENSRNOT00000088067 2 1 1 60 7 48027431 48027451 TTCCATAGGACATCAAGACGG 60 48027391 48027410 CATACTTCACTGTGCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052500.1 ENSRNOG00000055605 ENSRNOT00000082936 3 1 1 174 3 58173396 58173423 CCTCTTTCCTCTTTATTCTCAGC 59 58173241 58173259 TTGGCTGGGAGAATGACAG 60 Novel DesignRelaxed Rattus norvegicus 81 5S_rRNA ENSRNOG00000047794 ENSRNOT00000074819 2 1 1 60 12 1504038 1504060 GACCAATCTTGTCTGATCTAGGA 60 1504000 1504018 CCCATCCACGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066818.1 ENSRNOG00000049643 ENSRNOT00000074015 2 1 1 66 9 17175049 17175067 GTTTCTCTGTGTAGCCCTG 58 17175001 17175019 CTCTGAGTTCAAAGCCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554192 ENSRNOG00000056102 ENSRNOT00000081255 3 1 1 60 10 87912911 87912929 CATGTATGTGTTCTTGCGG 57 87912869 87912888 CAGTGAAGTAACTGGCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0706.2 ENSRNOG00000051046 ENSRNOT00000076677 3 1 1 132 10 70870698 70870856 CTAGGACTGACTGCCACAG 60 70870952 70870970 GTTCTTCTCTGCACCATGG 59 Novel Rattus norvegicus 81 AABR07072758.1 ENSRNOG00000011472 ENSRNOT00000015252 2 1 1 60 2 190114412 190114431 CAAAGATCAGGAAAGCCCAG 59 190114371 190114390 GTAACCAGTTTCTTCCTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.3 ENSRNOG00000060827 ENSRNOT00000091340 1 1 1 111 5 59090034 59090052 ATGTGTCCTTTGGTCTCCA 59 59090124 59090146 GAAATGGTCTAGCATGAAAGGA 59 Novel Rattus norvegicus 81 AC096792.1 ENSRNOG00000054624 ENSRNOT00000085280 1 1 1 80 7 133116526 133116545 CTACGAACTCAACATCAGCA 58 133117514 133118003 TTGTCACTGTAATCATGGCT 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000052147 ENSRNOT00000084444 2 1 1 60 10 66988255 66988275 ACTAACACTGCAACAGTACAC 59 66988215 66988234 TTGTCATGTCATCCTTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025757.1 ENSRNOG00000053529 ENSRNOT00000083803 2 1 1 96 16 48229197 48229217 GCACAGTTCTCAGTATACTGC 59 48229275 48229294 CTGAACAACTGAGCATGCC 60 Novel Rattus norvegicus 81 AABR07007134.1 ENSRNOG00000051496 ENSRNOT00000088966 1 1 1 60 1 282557551 282557571 GCGTAAATTCACAGAGAAGCA 59 282557593 282557611 TCCCACTGTTCCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.4 ENSRNOG00000053567 ENSRNOT00000081728 1 1 1 81 9 27678094 27678114 AGAGACTTGTAAGGGCTGC 59 27678031 27678050 TCTGTGTCTTGCTTCAACAG 59 Novel Rattus norvegicus 81 AABR07071742.1 ENSRNOG00000047621 ENSRNOT00000073760 3 1 1 61 8 128719693 128719711 TGTCCTGGAACTCACTCTG 59 128719734 128719754 GCAGAGGCAGGTAAATTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067387.1 ENSRNOG00000058101 ENSRNOT00000087372 3 1 1 62 9 41995381 41995402 ACACATACATAACCACAGACAC 59 41995340 41995363 GTGATGTGTCTGTATGTGTATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000064626 3 1 2 119 10 87819467 87819485 TGACCATCTACTGCAGCAC 60 87820033 87820052 TTTCACAGCAAGTTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 1 1 1 82 2 131957233 131957253 GGTCAGTGCCATTTATAAGCT 59 131957170 131957189 CAAATGCGTGAAGCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037545.1 ENSRNOG00000060708 ENSRNOT00000089821 1 1 1 82 X 23416397 23416421 GACATCTAAGAATAAAGTCCTGCTG 60 23416458 23416559 TCCACACGGTAACAATTATGTC 59 Novel Rattus norvegicus 81 AABR07015859.1 ENSRNOG00000058434 ENSRNOT00000078252 2 1 1 80 14 81703666 81703686 GAAGTAGAGAAGAAGCTGTGG 58 81703381 81703626 CTTGTTAGGCTTGTAGAAGGT 58 Novel Rattus norvegicus 81 AABR07067300.1 ENSRNOG00000060645 ENSRNOT00000083847 2 1 1 60 9 38799993 38800012 GCTACCATGTGATTGAGCTG 59 38800032 38800053 TTGATGTCACTGTACTCATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108635.1 ENSRNOG00000046778 ENSRNOT00000075337 1 1 1 89 7 6547792 6547812 TGATAGTTGGTGCTGTGAC 58 6547864 6547883 AGGGAAATCTCAGAATGGTC 57 Novel Rattus norvegicus 81 AC123358.1 ENSRNOG00000025626 ENSRNOT00000032928 2 1 1 65 12 50304025 50304043 CAAACAGCTCCACAACCAG 59 50304071 50304093 CCACTTAGGATTGGCTTTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001435.1 ENSRNOG00000004144 ENSRNOT00000058849 1 1 1 84 1 43933722 43933744 AAGTCGGTAGAGGTGAAGC 59 43933656 43933676 CTATTTCCTTTCCAGTGCTGG 59 Novel Rattus norvegicus 81 AABR07067491.1 ENSRNOG00000047654 ENSRNOT00000075738 2 1 1 136 9 49024276 49024294 CAATCAACAAACGCTCCCT 59 49024395 49024413 CATGTTGTGATGGAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000058641 ENSRNOT00000081270 3 1 1 60 3 25148527 25148548 GCTAATTAAGCCGATCAAGTCC 60 25148569 25148587 GTTTGCAACCATTGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021987.1 ENSRNOG00000058348 ENSRNOT00000080475 2 1 1 80 13 101664044 101664634 CACAAACCAAGGACCATGAC 60 101663983 101664004 GACACCTTTCATTAGGAACCTC 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058684 ENSRNOT00000085449 3 1 1 60 3 32761871 32761889 GGCACATGCATATAGTCCC 58 32761912 32761931 CTGGACTCAAATGATCCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057805 ENSRNOT00000090300 3 1 1 61 8 132251916 132251934 TTGCATGTGCATCAGTAGG 58 132251957 132251977 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061033 ENSRNOT00000083313 2 1 1 60 8 67919711 67919729 CTGTGACTTCTCCAAAGGC 59 67919753 67919771 GAGCATAGACCCAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000060429 ENSRNOT00000026540 2 1 1 80 1 65599944 65600239 AGGAGATGGTATCTCCAAGC 59 65599883 65599901 ATACGGAGGCTGTTTCCTG 60 Novel Rattus norvegicus 81 AABR07029933.1 ENSRNOG00000019814 ENSRNOT00000026813 1 1 1 80 10 60536673 60536691 TTCTGAAGTTGTCCTGCTC 57 60536732 60536755 GGAATGGAATATAGATGAGCCC 58 Novel Rattus norvegicus 81 AABR07035428.2 ENSRNOG00000059768 ENSRNOT00000080997 1 1 1 60 12 14183281 14183299 GGAAGTTCTCGCCATTCTG 59 14183323 14183341 CGGACTTCCTGTTTGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034938 ENSRNOT00000053061 2 1 1 66 8 114124512 114124530 AAGCTAAGCAGGGTCAGAC 59 114124464 114124482 TACAGTGCCTGGTATTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000059346 ENSRNOT00000086369 3 1 1 60 8 2382023 2382043 TGTGATCACAATGGAGATCTG 58 2382063 2382083 CAGCAAACAGAACTGTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052041 ENSRNOT00000091302 2 1 1 60 1 94591127 94591148 AATACAGAGAAGATTGGCATGG 59 94591088 94591106 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054145 ENSRNOT00000079293 1 1 1 65 8 69124880 69124901 CAGTGATGTTGTAATTTGCGTC 59 69124927 69124945 TTCAGCTTTCTGACAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058555 ENSRNOT00000079055 2 1 1 60 8 85480359 85480378 CATTGTAGGAGAACGTAGGG 58 85480318 85480336 CGCCTCATTTGGATGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041897 ENSRNOT00000063650 2 1 1 60 8 15461641 15461664 CTTGAATGTTACCCATCTCATCTG 60 15461604 15461626 GTTCTTACTACTTCCAAACCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008016.1 ENSRNOG00000050795 ENSRNOT00000073551 2 1 1 113 2 38978843 38978861 GGCACTGGAATAAAGAGGG 58 38978746 38978769 AGGATATTTGTTTCCTAGGCTG 58 Novel Rattus norvegicus 81 AABR07008016.1 ENSRNOG00000050795 ENSRNOT00000073551 3 1 1 115 2 38978844 38978863 CAGGCACTGGAATAAAGAGG 58 38978746 38978769 AGGATATTTGTTTCCTAGGCTG 58 Novel Rattus norvegicus 81 ENSRNOG00000032310 ENSRNOT00000044428 1 1 1 70 1 129227883 129227901 TATGCCAGGATTCATGTGG 57 129227816 129227837 AGTTCTTACCCTCCAATTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA55 ENSRNOG00000060932 ENSRNOT00000083013 2 1 1 60 8 13778721 13778739 CAGAGGAAATCCAGACGGG 60 13778762 13778781 TGGCGGAGTTATAGAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070851.1 ENSRNOG00000052238 ENSRNOT00000077273 1 1 1 60 8 87443954 87443973 ATTAGGGTCAGTGAGTCTGC 59 87443996 87444014 CAGGTCACCAAGTTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055232 ENSRNOT00000087185 1 1 1 60 8 41669852 41669870 GTGTGGTATATGCTTGCCT 58 41669893 41669912 GGGCCGTAATGTATCATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341,ENSRNOT00000084699 1 2 4 106 20 4427865 4427884 CTACTTACCTGGAGAGCCTG 59 4427340 4427796 CTTGAAGAATGGTGCCTGC 60 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000077198 1 1 4 84 20 4427796 4427814 GTAAGGGAAGCGTCTCAGG 60 4427012 4427030 GAGATCCGAGCTGAGAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AC132740.1 ENSRNOG00000054780 ENSRNOT00000084038 3 1 1 60 8 77978534 77978558 CAGCACTACAAAGGATAATAAAGGG 60 77978498 77978517 TCTAGGGTATAGCTTGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 1 1 1 88 20 47733352 47733370 ACTTAGGGATATCGCTGGT 58 47733281 47733302 GGGCAAGAATACCTACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025328.1 ENSRNOG00000043076 ENSRNOT00000067642 3 1 1 60 16 33942742 33942760 AAGGAGACAAAGCCAAGGT 59 33942784 33942802 TTAGCAGACAACCTTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000060240 ENSRNOT00000091104 2 1 1 60 3 121317843 121317864 AGAGCTTGTTAGACTCTTAACC 58 121317884 121317903 GGACGACATCAATCTTTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000060240 ENSRNOT00000091104 3 1 1 60 3 121317843 121317864 AGAGCTTGTTAGACTCTTAACC 58 121317883 121317903 GGACGACATCAATCTTTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026137.2 ENSRNOG00000059145 ENSRNOT00000092012 3 1 1 75 16 65256925 65256944 ACAGACACATACACAGACAC 58 65256980 65257000 GTGTCTGTATGGATCTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051794 ENSRNOT00000091997 3 1 1 60 3 160272667 160272687 CGTCAGTAAGTGACAGAAGAG 58 160272707 160272727 ATGTTCATAGAGCAGAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045809 ENSRNOT00000071208 2 1 1 66 16 4974810 4974829 TCTACAGCCACATTACCCTG 59 4974763 4974781 GGCCTAACCAAGCTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031166.1 ENSRNOG00000058649 ENSRNOT00000081055 1 1 1 80 18 2857318 2858511 CAGACACAACTTGGAACCC 59 2857256 2857274 CAAACCCAAGGCATCAGAG 59 Novel Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 3 1 1 68 14 32773506 32773525 TTTGCATTTGTATTCTCCGC 58 32770359 32773475 TCTCTTAACCCATCTGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046732.2 ENSRNOG00000058355 ENSRNOT00000086510 2 1 1 82 5 3951336 3953345 AGAACTGGAGTATCTATCTGCT 58 3953387 3953406 GTTTCTTTCCTGTTCAGCTG 57 Novel Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 3 1 1 67 6 2660339 2660932 CTTCACTCCTGCAATGAGC 59 2660290 2660311 TTCCATCACTGCAAGATTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062758.1 ENSRNOG00000056625 ENSRNOT00000083746 2 1 1 80 6 6498720 6498740 TTTGATCCTGTCACAGATGTC 58 6498779 6499252 ATGCTTCATGACTGAGAATGTC 59 Novel Rattus norvegicus 81 AABR07000325.1 ENSRNOG00000059032 ENSRNOT00000085963 3 1 1 84 1 9848529 9848961 TCCTGAAAGGGTTTCATTTAGC 59 9849006 9849024 ATGAAGCACTGAACCAGCT 60 Novel Rattus norvegicus 81 AABR07062800.1 ENSRNOG00000054861 ENSRNOT00000079649 1 1 1 93 6 9635387 9635405 CTCTGCCATGAAGGATGTG 58 9628789 9635332 GTTCATTAGATCTTCACGCCT 58 Novel Rattus norvegicus 81 AABR07060595.1 ENSRNOG00000054078 ENSRNOT00000088866 3 1 1 73 4 83332363 83332381 TCACTCACTGAGGAGTGGT 60 83380032 83380050 TTTAACTGGTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073024.1 ENSRNOG00000055762 ENSRNOT00000091326 1 1 1 62 4 84936193 84936211 GAACAACTGGTCAGCTCTG 59 84935889 84936170 ACAACTGAGAATGAGAAGATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000080219 2 1 2 80 4 86699586 86833033 TCACCATCGGATCTAAGTCAC 59 86699526 86699546 GTGGCTTCTCCTTAACATTCC 59 Novel Rattus norvegicus 81 AABR07029769.1 ENSRNOG00000053841 ENSRNOT00000090454 3 1 1 100 10 49607216 49614164 CACAAAGGGCCCTTTAGGA 60 49607134 49607152 TTCCTGTCTCTGGATGCTC 59 Novel Rattus norvegicus 81 AABR07047174.1 ENSRNOG00000057401 ENSRNOT00000085989 1 1 1 84 5 22255631 22256014 CATTTGTCACTCTGTGCCG 60 22255565 22255585 GGCTGCTGTAGTTATGAACAC 59 Novel Rattus norvegicus 81 AABR07060726.1 ENSRNOG00000054748 ENSRNOT00000080723 1 1 1 80 4 91179906 91179926 TAACAGTCAGCCTCAACTCTG 60 91179222 91179864 TCAAGGCATCCTGAAGTCC 59 Novel Rattus norvegicus 81 AC128394.2 ENSRNOG00000056019 ENSRNOT00000085926 2 1 1 112 1 12757922 12757941 TTAGAAGGAAAGACGGTGCT 59 12683096 12757847 CTTCACGACCTTCCCTCTC 60 Novel Rattus norvegicus 81 AABR07030034.1 ENSRNOG00000056642 ENSRNOT00000086672 1 1 1 80 10 63551057 63551076 ACCTATCTCCTGATCACCTG 58 63548722 63551015 ATATGGGTCCTGGAAGTACG 59 Novel Rattus norvegicus 81 AABR07015761.1 ENSRNOG00000060498 ENSRNOT00000078461 1 1 1 80 14 74325471 74329468 GTGCTGAGAAACAGAGAAGAG 59 74329509 74329528 TCAGTGCTGTGACTATGAGG 59 Novel Rattus norvegicus 81 AC115202.1 ENSRNOG00000055191 ENSRNOT00000087525 1 1 1 82 4 109419261 109419281 CCAAGAGTTGATTCAACAGTG 58 109419325 109461814 TTGTCGTAGCTGTCATGTG 58 Novel Rattus norvegicus 81 LOC102550026 ENSRNOG00000058323 ENSRNOT00000080713 3 1 1 82 5 51150927 51183618 AGCCCTTGAAAGAGATGAC 57 51150863 51150881 CTGGGAGAAACAGTGTTCC 58 Novel Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 2 1 1 78 5 58022472 58031710 AACCAGGCTTCTGGAAGTC 60 58022412 58022431 CATCAAGTGCTCAAGACTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072414.1 ENSRNOG00000054929 ENSRNOT00000084998 2 1 1 60 14 80905146 80905164 AGATGCTCAGCACTGATCC 60 80910807 80910826 GCCTAGTCTCTTTCCACCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030351.1 ENSRNOG00000054174 ENSRNOT00000085242 2 1 1 83 10 82338506 82341073 GAGAAACTCTACCTTGTCCC 57 82341118 82341137 GGAATTGAACTGGAGTCCTC 58 Novel Rattus norvegicus 81 AC095278.2 ENSRNOG00000061008 ENSRNOT00000089654 1 1 1 92 10 89496881 89496899 ACTAGACTCTCGGGAGCTC 60 89496390 89496825 AACATTCGTGAGACCAGGG 60 Novel Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 2 1 1 69 1 21438021 21465605 TACTTCGTTCCTTGCACAC 58 21465637 21465656 CAATGCATAGATGAACCCGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048571.1 ENSRNOG00000060978 ENSRNOT00000086205 3 1 1 93 5 82997174 83004370 AGCAACTACTCGACTTGGG 59 83004426 83004445 CCTTGGTGATGAAACCTGTG 59 Novel Rattus norvegicus 81 AABR07016558.1 ENSRNOG00000054704 ENSRNOT00000082916 1 1 1 96 14 103713329 103713347 TCTCCTTACGGCTTCAACC 59 103712519 103712537 TACATTATCGCTGAGGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061453.1 ENSRNOG00000052345 ENSRNOT00000086966 3 1 1 80 4 125607139 125607162 TAGATAGTAACTAGAGCTGGAGTG 59 125605241 125607101 CAAGCTTCTTACTCGTGCTG 59 Novel Rattus norvegicus 81 AABR07048856.1 ENSRNOG00000061374 ENSRNOT00000084791 2 1 1 80 5 93794074 93794095 GAAGATCCTCAGTAGTACACCT 59 93794134 93799974 GTCAAGGGTATCAGAAGATGC 59 Novel Rattus norvegicus 81 AABR07048856.1 ENSRNOG00000061374 ENSRNOT00000084791 3 1 1 80 5 93794073 93794093 GGAAGATCCTCAGTAGTACAC 57 93794134 93799973 TCAAGGGTATCAGAAGATGC 57 Novel Rattus norvegicus 81 AABR07048878.1 ENSRNOG00000051725 ENSRNOT00000084081 1 1 1 80 5 95426336 95426354 GGTTGCACTGGAAGAAAGG 59 95279215 95426295 CTCTTCATTTCTTCACTAGGGC 59 Novel Rattus norvegicus 81 AABR07000723.3 ENSRNOG00000061761 ENSRNOT00000090333 3 1 1 71 1 24610551 24610569 CCATGAAGAAGCACCAGTC 59 24610001 24610019 CCATCAGCCAATCAGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000081578 3 1 2 84 10 93233690 93234843 CCTGTTGCTGAAGATGGGA 60 93235421 93235440 TGGAGACATGACACTTCGAC 60 Novel Rattus norvegicus 81 AABR07061848.1 ENSRNOG00000052200 ENSRNOT00000089502 3 1 1 86 4 149372162 149382964 CACTGTAGTGATATTCTCAGTGTC 59 149383009 149383027 ACATTAAAGGGACCCGACC 59 Novel Rattus norvegicus 81 AABR07016856.1 ENSRNOG00000061888 ENSRNOT00000091393 2 1 1 102 15 2339147 2346046 TGGAACTCAAGTGTCCTACG 60 2339064 2339082 GTTGAAGCTCAGGTCAAGC 59 Novel Rattus norvegicus 81 AABR07016865.1 ENSRNOG00000051560 ENSRNOT00000086712 2 1 1 66 15 2549175 2549195 TTGAGGAAAGATCCCTATGGA 58 2549643 2549663 GGAGGATATACAGGATGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049156.1 ENSRNOG00000051401 ENSRNOT00000079787 2 1 1 87 5 107945217 107945237 CCCACTACACATAGAAGACTG 58 107945286 107945304 CCTTTCTTGGTATCGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001025.1 ENSRNOG00000057928 ENSRNOT00000091983 2 1 1 80 1 34271252 34271272 CCAGTTGAGAACTCTGATCCT 59 34269671 34271211 GGTGAGAACCAATTGTAGGC 59 Novel Rattus norvegicus 81 AABR07017159.1 ENSRNOG00000060406 ENSRNOT00000080380 1 1 1 155 15 14017863 14017881 GGATTGTAGTTCGTCCCGT 60 14018000 14044415 TAAAGAGGGCCTTCCAAGG 59 Novel Rattus norvegicus 81 AABR07017237.1 ENSRNOG00000053868 ENSRNOT00000079102 1 1 1 80 15 19068462 19068480 CCTTCCAGAATTTGGCCTG 59 19068518 19068752 CTCTATGATTCTCTGTAATCTCCTG 58 Novel Rattus norvegicus 81 AABR07030914.1 ENSRNOG00000061432 ENSRNOT00000091969 1 1 1 127 10 109098800 109098818 CAGTGAGCTATGTGGGAGG 60 109097702 109098709 AGATCTGTCACGTGTCTGC 60 Novel Rattus norvegicus 81 AABR07017269.1 ENSRNOG00000061896 ENSRNOT00000090531 3 1 1 80 15 20432697 20432715 GAAGGTGACACCTCTTGGA 59 20432756 20435351 GTTTCAGAAACAGACTGTTGGT 59 Novel Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 1 1 1 73 11 7581428 7582417 AAGAGTCTACAAAGGCTGAG 57 7582452 7582471 CCATGGTTATTTGTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033184.1 ENSRNOG00000056410 ENSRNOT00000078567 3 1 1 89 11 9373180 9416205 AAAGAACCGACCAGACTCTC 60 9416256 9416275 AGGGTATTCACTGAACTGCA 59 Novel Rattus norvegicus 81 AABR07017513.1 ENSRNOG00000060872 ENSRNOT00000080915 3 1 1 107 15 24879550 24879570 AAGACTGAACTTGAACTGGGA 59 24879637 24888361 GGTAACCTATTCCAGGGTCTC 59 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776,ENSRNOT00000082851 1 2 2 82 5 132706093 132708831 GAATCCAGGCATAAATGATGTG 58 132708871 132708892 CATAATTCATACCTGGATTCGC 58 Novel Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 3 1 1 89 1 45409405 45409526 GTAATAGAAGACCCGGTTTATGTG 59 45409339 45409357 ACCTGGTCCTCAAAGTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017701.1 ENSRNOG00000060201 ENSRNOT00000084474 3 1 1 88 15 30218952 30219194 TTTGTCTGGATGTAATGTGGC 59 30218884 30218902 AACAGTCCAGGGTGATGTC 59 Novel Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 2 1 1 115 5 133890144 133892881 TCCCACCTTGTTTCACAGG 60 133890047 133890066 GTGATCCTCCTGTCTCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031612.1 ENSRNOG00000051417 ENSRNOT00000091979 1 1 1 80 18 22405694 22405712 TAGCAACACTGCCATTGAC 59 22405230 22405650 TCTCCATGAAGCACCTGAG 59 Novel Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 1 1 1 60 4 181676579 181677079 CAAGAGTAAACACCCAGGC 59 181676537 181676555 TCCTGCCAGTCTCATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049760.2 ENSRNOG00000060378 ENSRNOT00000077862 2 1 1 133 5 136545171 136545189 TTCTGCTTCTCAGCTGGAC 60 136543608 136543626 ATCACAGAAGAGGGAAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000086823 2 1 3 68 1 47534125 47534144 AAGAGACCTCAGGAACACTG 59 47537476 47537494 TCCAATTTCTCCCACCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.3 ENSRNOG00000053613 ENSRNOT00000080716 2 1 1 84 4 181705792 181706403 TGTGCTTGTAAGCAGATGTG 59 181706450 181706468 GAAACTGTCCTTGGAAGCG 59 Novel Rattus norvegicus 81 AABR07017818.1 ENSRNOG00000051907 ENSRNOT00000082274 2 1 1 82 15 31351915 31351937 CAAGACCACTTTCTAGATGACAC 59 31351979 31352104 GAGTCCTTCCGAGTAGGAG 58 Novel Rattus norvegicus 81 AABR07072580.1 ENSRNOG00000058600 ENSRNOT00000078778 2 1 1 76 18 27911227 27911248 TGTTCTAACAGGATACCATTGC 59 27903692 27903710 TTCTCCCAGATCCTCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017872.1 ENSRNOG00000053204 ENSRNOT00000081388 3 1 1 80 15 32099126 32106374 GATACATTATTTCCTGGGAGGT 58 32106413 32106433 GAGTCTCCTTCAAAGACAGTG 58 Novel Rattus norvegicus 81 AABR07001594.1 ENSRNOG00000051553 ENSRNOT00000089898 3 1 1 101 1 54062460 54063359 AAGGAAGTGGACAAAGAGGA 59 54063423 54063441 AATCCCTGATGCCACAGAG 60 Novel Rattus norvegicus 81 AABR07031762.1 ENSRNOG00000054852 ENSRNOT00000092001 1 1 1 64 18 33155988 33156007 CCACAGGATGAGAATCACTG 58 33142297 33142316 GCTTCTTACACTTCAGTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031788.1 ENSRNOG00000057104 ENSRNOT00000082887 3 1 1 93 18 34899239 34899257 GTGTCTAGAGGCAGGAAGG 59 34899313 34911962 TACTGTTGCATTTCATTGGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 1 1 1 103 6 26142096 26145366 TTGAGGCACTGTCTCAGAG 59 26145433 26145451 TCTACAGAGCAAGTTCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049960.2 ENSRNOG00000059532 ENSRNOT00000090537 3 1 1 158 5 146306422 146306440 ATCATCGTGAAGGACTTGG 57 146307864 146307882 GAGTTTCATTGCCTCCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001662.1 ENSRNOG00000054056 ENSRNOT00000092209 3 1 1 81 1 54882842 54883329 ACTTTCTCAGGAAAGGGCA 59 54882779 54882797 GAGGATGCCTTGATTTGCA 59 Novel Rattus norvegicus 81 AABR07050017.2 ENSRNOG00000059632 ENSRNOT00000079596 1 1 1 80 5 148495216 148495963 TGGGAGGATGATGAGAAGTG 59 148495155 148495173 CTGTGCAGACTACTCACCC 60 Novel Rattus norvegicus 81 AABR07018119.2 ENSRNOG00000056083 ENSRNOT00000081111 3 1 1 81 15 40792181 40792956 GAAGTTTCAAGGACCTGGTG 59 40792119 40792137 TGAGGTAAGCAAGTGACGG 60 Novel Rattus norvegicus 81 AABR07001734.1 ENSRNOG00000054834 ENSRNOT00000089548 1 1 1 80 1 55708174 55708194 TTTAATGCCTCTGGGAAATCC 58 55708234 55730683 CACCTAGTTGTCCAACTTTCC 59 Novel Rattus norvegicus 81 AABR07050135.1 ENSRNOG00000053363 ENSRNOT00000090564 3 1 1 63 5 153036524 153036542 CCTTAGACATGCCTTGCAC 59 153034846 153034865 TCGTTGACACTGGAGATCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018170.1 ENSRNOG00000061107 ENSRNOT00000085399 2 1 1 78 15 44774700 44774718 AGAGTATGTGCTGAAACGC 58 44775530 44775549 GAAACCATTTCTTCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AC097890.2 ENSRNOG00000052423 ENSRNOT00000082396 1 1 1 84 18 51367621 51368733 TACTGCCAGAGTGCTTTCTC 60 51367556 51367575 TCATAGGACAAATGCCAGCA 60 Novel Rattus norvegicus 81 AC118858.2 ENSRNOG00000060555 ENSRNOT00000088774 3 1 1 81 18 51713466 51716659 CCATGACAGAGAAGTCTTAAAGAG 59 51716698 51716717 GTACCTTGGTTGACTTTGGT 58 Novel Rattus norvegicus 81 AABR07001929.1 ENSRNOG00000059824 ENSRNOT00000089634 3 1 1 60 1 62359993 62360016 GTGAAGAAAGAGTAAAGACTCCAG 59 62333379 62333400 TCTGTATCAGGAACAAACACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050283.1 ENSRNOG00000054390 ENSRNOT00000082800 1 1 1 80 5 159210095 159213918 AGTTACATAAAGGGAGCAGC 58 159210034 159210055 CCTGGGTATTATTTAGGTCAGC 58 Novel Rattus norvegicus 81 AABR07018262.1 ENSRNOG00000052442 ENSRNOT00000088926 2 1 1 80 15 49535978 49537418 ACCAATTCCTATTTCCTTGGAC 59 49535919 49535940 CACTCTTACCATCTGATCATCG 59 Novel Rattus norvegicus 81 AC141168.1 ENSRNOG00000061481 ENSRNOT00000079896 1 1 1 80 15 51103245 51103264 ACAGAGTAGAGAAAGGTGGT 58 51097940 51103204 GATAGAGCACTAAAGCATGGG 59 Novel Rattus norvegicus 81 AABR07018373.1 ENSRNOG00000061561 ENSRNOT00000086565 3 1 1 86 15 54700551 54700569 GACCACAATGTCAAGACCA 58 54701987 54702008 GAATCCCATACGAAGTACAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 3 2 2 81 1 71223096 71223116 ATATCCATCCTAGAGCAAGGT 58 71207961 71223053 CAGACTCCAATGCTGAACC 59 Novel Rattus norvegicus 81 AABR07032327.1 ENSRNOG00000052630 ENSRNOT00000080240 3 1 1 60 18 61176539 61180388 GAACACAGTGGATACCAGTC 58 61176498 61176518 CAGTTCCACCATGTAGTTCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07018456.1 ENSRNOG00000058117 ENSRNOT00000086799 3 1 1 81 15 58667351 58668935 TCACAGTGAAGGCTCACAG 60 58667288 58667307 AGCAGTTGTCAGTTTGAAGG 59 Novel Rattus norvegicus 81 AABR07032409.1 ENSRNOG00000057481 ENSRNOT00000082835 2 1 1 114 18 64327139 64327157 AGACAACCTGAGACACTGC 60 64327235 64333572 ATGTTCCTGCAAACAGAGC 59 Novel Rattus norvegicus 81 AABR07063751.1 ENSRNOG00000059011 ENSRNOT00000090517 2 1 1 62 6 45861252 45866014 TAGTCCTGACAGGAGGACC 60 45866039 45866058 GCATAGGCTTTGTGTTTGGA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07019019.1 ENSRNOG00000057930 ENSRNOT00000089703 1 1 1 119 15 83942054 83945356 CTTGTGGAGTGAAGCTATGC 59 83941954 83941978 GTGACTTAATAATCCTTCCTTGCTC 60 Novel Rattus norvegicus 81 AABR07051249.1 ENSRNOG00000057097 ENSRNOT00000081712 3 1 1 107 3 3434924 3438845 AGCTTCAAGGATCTTCCCT 58 3438916 3438934 CTAGGTAGGACAGAGCCTG 58 Novel Rattus norvegicus 81 AC135265.2 ENSRNOG00000058112 ENSRNOT00000079142 2 1 1 60 18 70787511 70787529 CTGCTCCTATAGAGGCTGC 59 70787016 70787035 GCTTCTAAGAGATGCAGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC107190.1 ENSRNOG00000056442 ENSRNOT00000085238 3 1 1 90 6 50866556 50866575 ACCCTTTGCTTTGAACTGAG 59 50866628 50869461 GTTCCTAGAGCTGTGAGGA 58 Novel Rattus norvegicus 81 AABR07032621.1 ENSRNOG00000054472 ENSRNOT00000086452 1 1 1 76 18 73981156 73981176 AAACAGATAACAGGAAGAGGG 57 73971654 73971672 TTTCCGGAGGACTCATCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 3 1 1 60 6 67771810 67771829 GTTTCCTGGCAATTTAGACC 57 67771850 67775148 CATCAAGTGTAAGAGGTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000092226 2 1 2 109 1 89650121 89675244 GCCTTCCTCTTATTAGGCCT 59 89675316 89675334 TCACTTCCTGGTACAGGGT 60 Novel Rattus norvegicus 81 AABR07032758.2 ENSRNOG00000057736 ENSRNOT00000088438 1 1 1 80 18 80209714 80209733 CTATATCTGCCCAGAACAGC 58 80209776 80212456 CTTTACAGCAGGATCCTGG 58 Novel Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 3 1 1 60 18 80294294 80294313 CTTCTCTTACTTGGCTCCTC 57 80294335 80300852 ATCAGAGGGTAGAAGTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000092132 2 1 2 89 1 94028392 94093220 CTTTAAGACTTGCCTGGGAG 58 94028322 94028344 GTCTAGTAAGAATGTGTCCTCAG 58 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 3 1 1 63 18 85814357 85816848 TGTACTATACATATGTACCTGGGC 60 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064755.1 ENSRNOG00000060880 ENSRNOT00000079915 1 1 1 80 6 93876280 93877364 CTCCTGGCCAAGTTAACAC 59 93877405 93877426 AGTATCTGTAGTAGTTGCTCCT 58 Novel Rattus norvegicus 81 AABR07019449.1 ENSRNOG00000059711 ENSRNOT00000086500 2 1 1 100 15 106195369 106195387 TACCCAGGAGTTTGGTCAG 59 106155555 106195305 CTGAGGTGTAGCTTCCCTC 59 Novel Rattus norvegicus 81 AABR07051666.1 ENSRNOG00000055767 ENSRNOT00000083837 1 1 1 80 3 18996931 18997167 TAGTGCCACAGTCATAGTGTC 60 18997208 18997227 TTCTTCCCAGGAGATGTAGC 59 Novel Rattus norvegicus 81 AABR07003049.2 ENSRNOG00000053564 ENSRNOT00000080393 2 1 1 85 1 95060868 95061351 GCTCTGTGGGTCATTTGAG 59 95061397 95061418 TCTACAGATATTTCTTGCAGGC 58 Novel Rattus norvegicus 81 AABR07051716.2 ENSRNOG00000060987 ENSRNOT00000083888 3 1 1 82 3 20015188 20015608 TTGTGGATTCCTGCTTCCA 59 20015654 20015672 GAGGCTTGATTTCCAAGGC 59 Novel Rattus norvegicus 81 AABR07019814.1 ENSRNOG00000055258 ENSRNOT00000088977 3 1 1 94 13 4255766 4261512 GATCTTCTTCCACGAATTGTG 57 4261567 4261586 ACGAATGGAGAAGAACTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 2 1 1 61 13 24516795 24520522 CCATCTCCAGTTAATTCAAGGT 58 24516755 24516775 GAGGATTCCATTCATCTTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065044.1 ENSRNOG00000052650 ENSRNOT00000091878 1 1 1 104 6 105553950 105564153 GAATCCAGGCATGTGTTCAG 59 105564220 105564238 CAAAGTCTCAGTGCCACAG 59 Novel Rattus norvegicus 81 AABR07020952.1 ENSRNOG00000058523 ENSRNOT00000085706 2 1 1 86 13 48379053 48379071 AAGGGTGTTCTAACCAACG 58 48379120 48380764 ATGCATGTCACAGAACTGAG 58 Novel Rattus norvegicus 81 AABR07020990.1 ENSRNOG00000057117 ENSRNOT00000087989 2 1 1 74 13 51336891 51336909 ACTCTCATTAGGCAAGCGG 60 51335772 51335790 TTCAAGTGTCCGAGTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033730.1 ENSRNOG00000055423 ENSRNOT00000083023 1 1 1 129 11 37726098 37726116 GGGAAGTAGAGGCATGGAG 59 37711544 37726005 CTGGTTGTTTCCCATCCAC 59 Novel Rattus norvegicus 81 AABR07003380.1 ENSRNOG00000051504 ENSRNOT00000086235 2 1 1 83 1 108266046 108266064 TTCTGAGCTCCACATCTGC 60 108266108 108267274 CCAGGGAAATCTTCATACACAG 59 Novel Rattus norvegicus 81 AABR07065282.1 ENSRNOG00000052153 ENSRNOT00000081584 2 1 1 85 6 119151204 119185098 ACCACTGTGAGCTCTTCTG 59 119151137 119151155 TTGGTGGTAAGTTGACCGA 59 Novel Rattus norvegicus 81 AABR07003418.1 ENSRNOG00000051394 ENSRNOT00000091509 1 1 1 82 1 109462471 109462489 TTCTGAGCTCCACATCTGC 60 109462531 109463698 CAGGGAAATCTTCATACACAGTG 60 Novel Rattus norvegicus 81 AABR07021419.1 ENSRNOG00000052817 ENSRNOT00000088938 3 1 1 71 13 71145689 71145708 ATCCCAATGTCTACTGTGCC 60 71147599 71147617 GAGTCAAGTCCCTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003713.1 ENSRNOG00000051601 ENSRNOT00000088805 3 1 1 104 1 117799132 117799831 GAGGCCTTGTTACACTGTG 59 117799046 117799067 TCAGTCAGTTCATAGACATGCT 59 Novel Rattus norvegicus 81 AABR07003827.1 ENSRNOG00000055116 ENSRNOT00000083824 1 1 1 80 1 118709875 118709895 TGTTAACCTTCTGTCATGGGA 59 118708068 118709834 TTGTACAAAGCCAAGCTGTC 59 Novel Rattus norvegicus 81 AABR07065406.2 ENSRNOG00000060830 ENSRNOT00000082112 2 1 1 98 6 125904609 125910923 ATCTACTTCAGGCAAAGTGG 58 125904530 125904548 AAAGAACTTGCTCTGAGGG 57 Novel Rattus norvegicus 81 AABR07021635.1 ENSRNOG00000057731 ENSRNOT00000084244 3 1 1 99 13 83108869 83110827 TACACTATTGTTCGCCCGT 59 83108788 83108808 GAGGAAGGAACTGGAACTCTC 60 Novel Rattus norvegicus 81 AABR07004090.1 ENSRNOG00000056061 ENSRNOT00000082014 1 1 1 99 1 124300109 124311484 CATCCTGTTTCTAATGGTACTTCTC 59 124300034 124300052 ATGTTTCCATGTGCTTGCA 59 Novel Rattus norvegicus 81 AABR07004090.1 ENSRNOG00000056061 ENSRNOT00000082014 2 1 1 100 1 124300109 124311484 CATCCTGTTTCTAATGGTACTTCTC 59 124300033 124300052 GATGTTTCCATGTGCTTGCA 60 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 1 2 2 98 6 129000923 129000941 CTGAGATTGTGATCGCCAC 59 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07065455.1 ENSRNOG00000052292 ENSRNOT00000080264 3 1 1 61 6 129095662 129095680 GCATCTTACTCACCCTGTC 58 129095908 129095927 TTTCCACTGAAGTCTTGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021799.1 ENSRNOG00000061447 ENSRNOT00000084883 3 1 1 98 13 91527523 91528905 TGGGCAATCAGAGTAACCA 59 91527273 91527297 GAAGACTTCCAACTTCTATTTCTCC 60 Novel Rattus norvegicus 81 AC125847.3 ENSRNOG00000058735 ENSRNOT00000090280 3 1 1 102 6 129441398 129442821 CATCCAGGTGATAGGGTGG 59 129442887 129442905 GACACTGACCTTGACCCTC 60 Novel Rattus norvegicus 81 LOC103692343 ENSRNOG00000059585 ENSRNOT00000082828 2 1 1 80 13 95717630 95717651 TCTGGAGACAATAGAAACATCC 58 95712037 95717589 ACGGATAGAATCGTCTGGG 59 Novel Rattus norvegicus 81 AABR07072881.1 ENSRNOG00000060062 ENSRNOT00000087872 3 1 1 60 3 71935335 71935354 ATAGCGAATTCACTCTGCTG 58 71933706 71933728 CTATATCTGGTTACTTCTCCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034761.2 ENSRNOG00000055545 ENSRNOT00000089264 3 1 1 81 11 88542918 88542936 TAGTCACCCGTTTAGGAGG 58 88542460 88542873 GGCCCAATGATCAATCCTG 59 Novel Rattus norvegicus 81 AABR07004227.1 ENSRNOG00000058019 ENSRNOT00000084862 1 1 1 80 1 131139174 131140072 ATGCAGGATGAAGGTACCC 59 131140112 131140134 CTACTTGAGATGTAGCTTGACAC 59 Novel Rattus norvegicus 81 AABR07034833.2 ENSRNOG00000056188 ENSRNOT00000083437 1 1 1 80 12 57532 57892 GTGACTACATGGCATTTGAC 57 57471 57492 TGATCCAATTAGACACCTTCAG 58 Novel Rattus norvegicus 81 AC121220.1 ENSRNOG00000058990 ENSRNOT00000089556 2 1 1 87 6 135259895 135259913 GTAACGCTAGTTGGAGCCT 60 135259959 135262765 CTGGAGACTTAAATTACACAGCAG 60 Novel Rattus norvegicus 81 AABR07035005.1 ENSRNOG00000058796 ENSRNOT00000081048 1 1 1 99 12 3134353 3134729 ATCCTATGGAACTTGATGGGT 59 3134790 3134808 TTACCTCCTCCCTCTCCTG 59 Novel Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000090877 2 1 2 80 13 101999535 101999553 TGATGTTGCCACCATACTC 58 101999595 102018728 TCCTGTAGATCTCCAGTAGTG 58 Novel Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 2 1 1 68 3 80966022 80966040 ACTGACAAACTGAGCACCA 60 80966072 80968172 CAGACATGTGACGACAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022055.1 ENSRNOG00000061655 ENSRNOT00000077089 3 1 1 90 13 104672043 104673253 TATTGTGTTAAGTGGCAGCAG 59 104673305 104673323 TGATTCCCGATCCTCTTGC 60 Novel Rattus norvegicus 81 AABR07052926.1 ENSRNOG00000057412 ENSRNOT00000081064 1 1 1 73 3 84526852 84526870 GTCATCTCTGGACTCGAGC 60 84526233 84526252 GGCCTGATGTTGAAAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 3 1 1 85 12 6233849 6233867 ATACTTCCGGTCTGTCTCC 58 6233916 6234290 GTGCTGTGCCTTTATGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 1 1 1 61 3 90965826 90974803 GCTGTACCTATTTGTTTCTGG 57 90965785 90965803 CAGTTCGAGGCATTTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000078698 1 1 2 80 1 141944963 141944981 CTCAAGGACGATGTCTGCA 60 141945023 141945856 TTTCTTCTTTGACCTGTGCTG 59 Novel Rattus norvegicus 81 AABR07024580.1 ENSRNOG00000052302 ENSRNOT00000084561 1 1 1 60 16 6690603 6690622 CTTTCAAAGCCCACACTGAG 60 6689306 6689325 CCAAATAGGTAGGGAGAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004428.1 ENSRNOG00000061889 ENSRNOT00000089908 3 1 1 61 1 142500826 142500845 GGAACTAAACACCAGTCCTC 58 142511527 142511545 CTCCAGAGCTAGTGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024648.1 ENSRNOG00000051628 ENSRNOT00000081641 2 1 1 82 16 10163979 10163998 TGGATAAGCCAGTCATTCCC 60 10164311 10165603 CAGTGTCTTGCCTTGACAG 59 Novel Rattus norvegicus 81 AABR07024652.2 ENSRNOG00000060767 ENSRNOT00000091708 3 1 1 80 16 10343258 10343276 CAGAGGTCCTTAAAGGCCA 59 10341356 10343215 ACAGGAAGTTCTCTGTGCTC 60 Novel Rattus norvegicus 81 AABR07004495.1 ENSRNOG00000055810 ENSRNOT00000079518 1 1 1 88 1 146347118 146347712 ATTACCTAGCTCGCTCACG 59 146347048 146347066 CACCCGGTGAAATGTTGTG 60 Novel Rattus norvegicus 81 AABR07035486.1 ENSRNOG00000059220 ENSRNOT00000080542 1 1 1 122 12 17720685 17729351 AGAGAATGGGACTGTCTACAC 59 17729435 17729453 AATACTGACCAGGCTCGAG 59 Novel Rattus norvegicus 81 AABR07066782.2 ENSRNOG00000060676 ENSRNOT00000089080 1 1 1 80 9 16145591 16145612 CAACTGACTTGCTTATGTTAGG 58 16145652 16149621 AATTAACTGCATCAGCTCCA 58 Novel Rattus norvegicus 81 AABR07004783.1 ENSRNOG00000059114 ENSRNOT00000082580 2 1 1 81 1 156493539 156506094 CACTTCTGGACTACCATCGT 59 156506138 156506156 TTCTTGTCCCTCAGCTTCC 59 Novel Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 2 1 1 85 16 18597478 18598109 TTCCATGATACCAGCAGCC 60 18601918 18601936 AACTTTGCCTTCTCCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004823.1 ENSRNOG00000053655 ENSRNOT00000079979 2 1 1 97 1 159635514 159635534 GATAGCAAAGGCTATATGCCC 59 159634135 159635456 TATCTTTGCCTCATTGTGCC 59 Novel Rattus norvegicus 81 AABR07066841.2 ENSRNOG00000060739 ENSRNOT00000083180 3 1 1 80 9 18983759 18984311 GTACGATCATTTCCAGGATTTGG 60 18983701 18983721 TCTGGAGTGAAGTAGAAGGTG 59 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 1 2 2 88 12 22369855 22369876 TGGCTTTGTGTTCAATAAGGAC 60 22369925 22370340 TCTTACCTGCCGGAATGAG 59 Novel Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 1 1 1 60 12 22512601 22528104 GAAAGCGACCATGAACTGG 59 22512559 22512579 ATTCTCAACTTCTGTTGACCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 3 1 1 91 9 26953194 26953213 TTCGAAGCTGTAGGAGTAGG 59 26952793 26953140 AGTCGATCACATTGGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053854.1 ENSRNOG00000059080 ENSRNOT00000078079 2 1 1 81 3 131100708 131105615 GCACTAAAGATAAAGCAGCTG 58 131105657 131105676 TTTGCTTTGGCAACATAGGA 58 Novel Rattus norvegicus 81 AABR07005508.1 ENSRNOG00000061369 ENSRNOT00000088187 3 1 1 91 1 183892306 183892324 TGAAGTTGGATCACGTACC 57 183885278 183892252 CTATGCTTGTCTCACTAGGC 58 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 2 1 1 101 12 28145665 28150422 AGGTCAGGAACAAACTCCA 59 28145582 28145600 AATCCATCTTCCCTCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859 3 1 3 80 3 142297336 142319136 GGATACATTTCAAGGGTGAACC 59 142297277 142297295 ACTGAGACACTGGGTACCA 60 Novel Rattus norvegicus 81 AABR07067310.1 ENSRNOG00000055308 ENSRNOT00000088507 2 1 1 80 9 39530098 39530118 ACAAGGATCCATTATGAGTGC 58 39519804 39530058 TTCTTCTTTAGTCTGCTCTGG 58 Novel Rattus norvegicus 81 AABR07036074.1 ENSRNOG00000054150 ENSRNOT00000087767 2 1 1 81 12 33520987 33521377 TGTTACAGAGTCTACCCATCC 59 33521420 33521438 CCTCAGGAAGTTCTCCAGG 59 Novel Rattus norvegicus 81 AABR07025958.1 ENSRNOG00000057980 ENSRNOT00000091333 2 1 1 81 16 56485885 56523227 GGAGGACTTCAATTGGACTG 58 56523267 56523289 CCAGTTACTGAATCCATCATCTC 59 Novel Rattus norvegicus 81 AABR07036331.2 ENSRNOG00000057941 ENSRNOT00000090171 2 1 1 81 12 38874345 38874363 CACAGTAGACACTCCTTGC 58 38874405 38878011 AATTCACTTCTTAGTGGGAAGG 58 Novel Rattus norvegicus 81 AABR07026032.1 ENSRNOG00000054809 ENSRNOT00000079224 3 1 1 108 16 60009037 60009470 GTGGTGCAAGGGATAAAGC 59 60008947 60008967 CAGCAGTTAACTGAATTGCCA 60 Novel Rattus norvegicus 81 AABR07026037.1 ENSRNOG00000054950 ENSRNOT00000085711 1 1 1 104 16 60393441 60393461 CCTGCCAAAGAAATCAATCAC 58 60393525 60394896 GAAAGTGTCATTCATGCAGAG 58 Novel Rattus norvegicus 81 AABR07036406.2 ENSRNOG00000056161 ENSRNOT00000087400 2 1 1 97 12 42076152 42076170 TGGTCAGGTCTCTTCAGAG 58 42074567 42076093 GGAACAATACAACATGTCCTG 57 Novel Rattus norvegicus 81 AABR07067728.1 ENSRNOG00000052194 ENSRNOT00000081963 1 1 1 80 9 59582030 59582051 CAGATCAAAGGTCAAATCTCCA 59 59576312 59581991 GAATCTTGCTGCATAATGACG 58 Novel Rattus norvegicus 81 AABR07067767.1 ENSRNOG00000056520 ENSRNOT00000080327 1 1 1 80 9 62574206 62574225 TGTCCTGGAGCAGATTTCTG 60 62574268 62586004 TCCCTCTGTCAAGCATCTG 59 Novel Rattus norvegicus 81 AABR07036542.1 ENSRNOG00000058601 ENSRNOT00000078437 3 1 1 102 12 47842955 47842975 GATAAACCAAGGCTCAAAGAG 57 47847001 47847019 TACTAGGATCACAGAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054656.1 ENSRNOG00000061341 ENSRNOT00000088863 1 1 1 80 3 165962084 165981320 ATGATAGCAAGGTCTTAGACAG 58 165984924 165984942 CGTTGGTTCAAATCCACCT 58 Novel Rattus norvegicus 81 AABR07054656.1 ENSRNOG00000061341 ENSRNOT00000088863 3 1 1 81 3 165962085 165981320 TGATAGCAAGGTCTTAGACAG 57 165984926 165984944 CACGTTGGTTCAAATCCAC 58 Novel Rattus norvegicus 81 AABR07036640.1 ENSRNOG00000054829 ENSRNOT00000085103 3 1 1 61 12 51366311 51366330 AGGAAGGCCTGTTAGAACAC 60 51362296 51362316 CTGGATCAGGTTCCTCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 1 1 1 60 X 5789763 5824572 CTTTCCATGCTTCAACAAGG 58 5789722 5789741 ATTTGCTCCATTTGCTTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054801.1 ENSRNOG00000061502 ENSRNOT00000085438 3 1 1 80 3 169641759 169641778 CTGAAGATGACAGGTCTCCA 59 169641821 169657001 GTTCCAACACCTTGACGTC 59 Novel Rattus norvegicus 81 AABR07037149.1 ENSRNOG00000058184 ENSRNOT00000083697 3 1 1 81 X 14547456 14548425 TAGTCAAAGACCAAGGAAGCA 59 14547395 14547415 GCATTCTCTTACCTGATTCCC 59 Novel Rattus norvegicus 81 AABR07068053.1 ENSRNOG00000058100 ENSRNOT00000078057 1 1 1 83 9 80068360 80068379 CATCCTTTGGACTCCATCTG 58 80068423 80068783 AGTCTACAGATGAGTCTAGCA 58 Novel Rattus norvegicus 81 AABR07068060.1 ENSRNOG00000052067 ENSRNOT00000077925 2 1 1 80 9 80425916 80427113 GTACAAAGCTTGGGTCGTC 59 80425854 80425874 CTACCACTTCTCATTCCTGGA 59 Novel Rattus norvegicus 81 AABR07054855.1 ENSRNOG00000058795 ENSRNOT00000086974 3 1 1 83 3 172371197 172373909 ATGGACTCAGACACTGTTCC 60 172371133 172371151 GATTCGTGTTGCTCGATGG 59 Novel Rattus norvegicus 81 AABR07068086.1 ENSRNOG00000055414 ENSRNOT00000088698 2 1 1 80 9 83313375 83313396 TGAAAGGGAAATTCTTGTCTCC 59 83311867 83313337 TCAACTTCCTTGGAGTTTAGTG 58 Novel Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 1 1 1 62 16 78903781 78903799 AAAGCAGTCAAGGAACCAG 58 78880318 78903756 CACAGGACCTAAATTCCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AC135298.1 ENSRNOG00000061054 ENSRNOT00000081754 2 1 1 80 3 176393657 176395146 TGTCTATTCAGGTCAGATGTCAG 60 176393599 176393618 TGACAATCGAAAGGTTGTGC 60 Novel Rattus norvegicus 81 AABR07026499.1 ENSRNOG00000058718 ENSRNOT00000084061 1 1 1 80 16 79299943 79299961 TTGTATGCCTTCCTCCAGG 59 79300003 79300908 CTAGGACAACACAAAGCTACC 59 Novel Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 1 1 1 60 9 86775874 86775893 CTGAAGTTACGAATGAGGGA 57 86775915 86781368 CTCTGATTGCTAAGCATGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038556.1 ENSRNOG00000058617 ENSRNOT00000091796 1 1 1 80 X 54912047 54913152 AAATCAAGGAGTACAAGGCC 58 54911986 54912006 GCCATGTTTATATGGAACCAG 57 Novel Rattus norvegicus 81 AC098189.1 ENSRNOG00000054082 ENSRNOT00000091354 3 1 1 87 9 94269468 94269486 CACATTTGTGCAGGAGAGC 60 94269536 94270184 CTCAAGGTACAGAACTTGGC 59 Novel Rattus norvegicus 81 AABR07026557.2 ENSRNOG00000061488 ENSRNOT00000081647 1 1 1 132 16 83203352 83203370 TGTGCCACAGTTTGTTCTG 59 83198833 83203256 TGGAGAGGAGTTCTTTGCC 59 Novel Rattus norvegicus 81 AABR07006649.1 ENSRNOG00000058592 ENSRNOT00000086142 3 1 1 80 1 244211728 244211749 TGATTCAAGATGGAAAGTGGAC 59 244209307 244211687 CATTCCCGTTAACCTGGGT 60 Novel Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000084627 1 1 2 60 X 72724628 72724647 AGATGAAGGAACGTCCTGAC 60 72724962 72724980 ATGTGTCCAATTGCACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 1 1 1 92 16 86537922 86538760 AAAGGTAGGAGGTGTCAGC 59 86538816 86538834 GAGTCAGCTTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922,ENSRNOT00000084598 1 2 2 80 16 87443303 87443324 CATCATCACATGCTATCTTTGG 58 87443364 87470795 CAAATGGAGGCAAATCTCAG 57 Novel Rattus norvegicus 81 AABR07006685.1 ENSRNOG00000059944 ENSRNOT00000085934 3 1 1 69 1 246938188 246938207 AAGGAATTCCTCGGTCTGAG 59 246927908 246927926 TTTCCATATGGGCTCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006689.1 ENSRNOG00000056566 ENSRNOT00000079361 1 1 1 80 1 248405061 248405079 CTTACAGCACTGCACAGAC 59 248405120 248412520 CTGTGGTTATTCAAGCAAACTC 58 Novel Rattus norvegicus 81 AABR07039773.1 ENSRNOG00000059472 ENSRNOT00000078766 2 1 1 88 X 84529515 84530008 CTGCTCCACAAGAGATGTC 58 84530056 84530078 GTAGTAGTCTTAGGTTCAGTGTC 58 Novel Rattus norvegicus 81 AABR07056374.1 ENSRNOG00000061837 ENSRNOT00000083690 1 1 1 81 7 22986348 22986371 CACAGAGATTCCTGTTAAATGTCC 60 22982416 22986309 TCTAACTTCATCCAGCCTGC 60 Novel Rattus norvegicus 81 AABR07056374.1 ENSRNOG00000061837 ENSRNOT00000083690 2 1 1 81 7 22986346 22986369 CAGAGATTCCTGTTAAATGTCCAC 60 22982414 22986308 TCTCTAACTTCATCCAGCCTG 59 Novel Rattus norvegicus 81 AABR07068554.1 ENSRNOG00000060095 ENSRNOT00000079939 2 1 1 80 9 108257975 108278530 ACAGTACAAGTTTCCATGCTG 59 108257915 108257934 AGTGACAAGCTAGCTTTCAC 58 Novel Rattus norvegicus 81 AABR07006736.1 ENSRNOG00000061760 ENSRNOT00000083581 2 1 1 80 1 250660522 250662371 TGTCCCAGTAATTACAGAGCT 59 250660462 250660480 GTATCCTCTGCCTGGATCC 59 Novel Rattus norvegicus 81 AABR07068657.1 ENSRNOG00000058854 ENSRNOT00000084097 3 1 1 85 9 114215922 114218522 CCTTCTGTATAATGGAGGGTCC 60 114215858 114215876 GTCTTCTGGGCTTGAGAGG 60 Novel Rattus norvegicus 81 AABR07026989.1 ENSRNOG00000057239 ENSRNOT00000091032 1 1 1 82 17 8694976 8773370 CCACAAGACAAGGTTTGGG 59 8694912 8694930 CTAGCTGTCAGAAGCCTGG 60 Novel Rattus norvegicus 81 AABR07068705.1 ENSRNOG00000061831 ENSRNOT00000078863 1 1 1 80 9 115570677 115570696 GATGCTCTCCGATATCTCCA 59 115569635 115570636 GCAGATGTCTGAGAAGATACC 58 Novel Rattus norvegicus 81 AC139608.1 ENSRNOG00000054147 ENSRNOT00000078596 2 1 1 81 17 9470368 9470387 CTCAAGCCTTCAGATCACAG 58 9470431 9471109 AGCAACACATTGTTACGCA 59 Novel Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 3 1 1 81 1 257041634 257043999 GAAGTCATTCTGAGGCAGG 58 257041571 257041589 GATTCCTGCTTCTCAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027010.2 ENSRNOG00000061562 ENSRNOT00000083981 2 1 1 81 17 10652155 10652175 CAGATTCACGGTAACAGAACG 59 10652213 10652920 CTCCAGTACTTGTCTCATTATCTG 59 Novel Rattus norvegicus 81 AABR07006854.1 ENSRNOG00000053865 ENSRNOT00000079393 3 1 1 81 1 259018929 259018948 ACTTGGTGGAATGAGTGGAG 60 259018989 259024183 CAATCCGATCTTCAATGCTCTG 60 Novel Rattus norvegicus 81 AABR07042668.1 ENSRNOG00000051791 ENSRNOT00000091435 2 1 1 87 19 2391274 2392048 GAATGAGGGAAGAATCCAGC 59 2392097 2392116 CACTACAGCAAAGGATACCC 58 Novel Rattus norvegicus 81 AC096370.1 ENSRNOG00000055937 ENSRNOT00000089366 2 1 1 105 1 259606776 259608220 GATCCGGAAGAGCTCTTCC 60 259608289 259608307 TTGTGGTCTCAGACAGCTC 59 Novel Rattus norvegicus 81 AABR07068997.1 ENSRNOG00000060907 ENSRNOT00000080435 1 1 1 84 8 4785445 4785463 ATTACCAAGCTACCAGGGA 58 4738376 4785399 AGCTTGGAGGTAATACATCAG 57 Novel Rattus norvegicus 81 AABR07069001.1 ENSRNOG00000055410 ENSRNOT00000078536,ENSRNOT00000084831 3 2 2 84 8 4890737 4896594 TTTAGGTATTTGGCTGGTCTG 58 4890673 4890691 ATCTCCATAGGCTAGCAGC 59 Novel Rattus norvegicus 81 AABR07027152.1 ENSRNOG00000053097 ENSRNOT00000082420 3 1 1 90 17 16662931 16662950 ATAGCCAGTACTGTCCATGG 59 16663000 16665540 CTGGATTTCTCTGTCTCTTCTC 58 Novel Rattus norvegicus 81 AABR07073295.1 ENSRNOG00000057318 ENSRNOT00000088579 2 1 1 80 7 34868247 34868266 CTCTTTCTGCTGAGCTACAC 58 34867796 34868206 CCTTACATGAGCTCTCAACAG 59 Novel Rattus norvegicus 81 AABR07027190.2 ENSRNOG00000060391 ENSRNOT00000077614 1 1 1 80 17 18875294 18879426 AGGATGAAGTTAGGGAGCTG 59 18879466 18879487 TGAGTCATAACCTCCATGACTG 60 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000082461 2 1 2 171 1 264488777 264488795 CTGTCCCTCCAATCTGTCC 60 264489687 264489706 CATAAGGCGCAATCAGTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 1 1 2 98 19 11671490 11686698 AAGGCTTGACTCCTGTCTC 59 11686759 11686778 TCGCCTTCAATTTCATTCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027240.1 ENSRNOG00000057369 ENSRNOT00000091373 1 1 1 80 17 20827806 20827917 GCATTGAGATCTGCCAAGTG 60 20827745 20827764 TATTTCTCCCGATTTGGCGT 60 Novel Rattus norvegicus 81 AABR07056769.1 ENSRNOG00000055033 ENSRNOT00000077565 1 1 1 81 7 40553715 40553735 GGTTTCCTTATGAGTTGTGGA 58 40553778 40559361 GCTCTGTATCTGGTGTGAG 57 Novel Rattus norvegicus 81 AABR07056802.1 ENSRNOG00000060920 ENSRNOT00000080263 3 1 1 83 7 41798840 41798859 AGGTCGAAGCGTCATATCAG 60 41764200 41798796 AGAGAAGTTACCTCCACAGAC 59 Novel Rattus norvegicus 81 AABR07043001.1 ENSRNOG00000058624 ENSRNOT00000088372 1 1 1 121 19 16166695 16166713 TATACTTGAGCACTGCAGC 58 16158351 16166610 GAGTTGTTTGCCATCACAC 58 Novel Rattus norvegicus 81 AABR07056882.1 ENSRNOG00000054680 ENSRNOT00000090648 2 1 1 88 7 44983943 44983966 CTGGAAACATACACAGAAGTTCTC 60 44946771 44983898 CATGTCTTTGATGTTCTCCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 1 1 1 60 1 272859338 272859359 CTGTGGAAAGAATGATAGATGC 57 272858845 272859318 TTCGTTCCATGATTCAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043075.1 ENSRNOG00000055175 ENSRNOT00000084812 1 1 1 89 19 19229619 19236468 GAAAGCAGGGTGTTACCAG 59 19236521 19236539 ACTTCATTGGCTTCATGGC 59 Novel Rattus norvegicus 81 AABR07043098.1 ENSRNOG00000054562 ENSRNOT00000087496 2 1 1 103 19 20567812 20567830 GCTGTATCTCCTTTGGTGG 58 20559740 20559758 GAATGTGGAGATTCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057203.1 ENSRNOG00000059338 ENSRNOT00000086821 2 1 1 61 7 60282582 60282600 GAGAAGTGTGAGGGATCCC 59 60283361 60283379 TTTGACAGTGTCTTTGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 3 1 1 104 19 20784119 20784137 TCATCCTAGCAGAAGTGGG 59 20774729 20784054 CATCTGGGAAATTTGCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043106.1 ENSRNOG00000052466 ENSRNOT00000082702 2 1 1 84 19 21366270 21368333 AACACAGTAACAAGTGTCCAG 59 21366206 21366224 CAAGTAGGAGGCCTAGGTG 59 Novel Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 1 1 1 72 7 63270913 63270931 CTGGAGTCAGCAGAGAAGG 60 63269739 63270879 CCTGGGACATATTTAGCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043354.1 ENSRNOG00000061623 ENSRNOT00000087479 1 1 1 80 19 27668454 27668472 ACATCATCAAGATGCTGCC 58 27660629 27668414 GTACTTCTCCAAGTCATTGTCAG 59 Novel Rattus norvegicus 81 AABR07006993.1 ENSRNOG00000060255 ENSRNOT00000081828 2 1 1 88 1 275674406 275674424 GAACAACACTTCCAGGCTC 59 275674476 275677168 GGATCCGCAGAAGTTACAC 58 Novel Rattus norvegicus 81 AABR07043429.1 ENSRNOG00000059075 ENSRNOT00000079937 2 1 1 80 19 28317994 28318646 ACTTCTATCACAACCTGCAC 58 28317933 28317951 ACTCCTGCTTCAATGTGAC 58 Novel Rattus norvegicus 81 AABR07007055.1 ENSRNOG00000061365 ENSRNOT00000077804 2 1 1 107 1 278478817 278478837 AGAAGTCTCTGTACAACTGCC 60 278477564 278478748 CCAGGAGGTCATTTCCCTG 60 Novel Rattus norvegicus 81 AABR07028945.1 ENSRNOG00000052005 ENSRNOT00000079837 1 1 1 84 10 377256 377274 TCGTGAAGCCAAGAAACAC 59 377321 381677 ATACAGAGGAGTGTCACAGC 59 Novel Rattus norvegicus 81 AABR07043822.1 ENSRNOG00000051743 ENSRNOT00000081658 1 1 1 81 19 41654474 41655389 CTTCTTCAGTTCATGGATTAGCAG 60 41655426 41655447 CAATAATGTGCACACTGTACCT 59 Novel Rattus norvegicus 81 AABR07029218.1 ENSRNOG00000054167 ENSRNOT00000082397 1 1 1 85 10 15837097 15837115 TTCCAGGAGCAGTTCAAGG 60 15837161 15838245 TGAAAGAATCCTTCCAAAGCAC 60 Novel Rattus norvegicus 81 AABR07070122.1 ENSRNOG00000061391 ENSRNOT00000080725 2 1 1 82 8 53558561 53560963 CACTTCTCAGCATTAGGCAC 59 53561008 53561026 CTTCAATTCGTGCTCCTCC 59 Novel Rattus norvegicus 81 AC119699.1 ENSRNOG00000051385 ENSRNOT00000088890 2 1 1 80 10 16514366 16514577 TATGGACCGTAACGGTTACAG 60 16514306 16514326 GCTATAGAAACCATCCCTGGA 59 Novel Rattus norvegicus 81 AABR07029470.1 ENSRNOG00000057519 ENSRNOT00000085360 2 1 1 142 10 29635878 29635896 AGCAGAGAACAGATCACCC 59 29636001 29773012 ATTTCCTTTCAACCACCTGG 58 Novel Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 1 1 1 65 X 139471810 139473963 AAAGAGTTGGAGAGCAGGT 59 139473991 139474010 CTTGGTGACTTACCTCTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058412.2 ENSRNOG00000059713 ENSRNOT00000086159 1 1 1 61 7 115114858 115114876 TCAGAGTGGGAAACAGCTG 60 115114387 115114405 AGATATCTTGGAGGGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070335.1 ENSRNOG00000053878 ENSRNOT00000085846 2 1 1 91 8 66066062 66066082 TGCTTCCTTATCTGCTAATGG 58 66064556 66064577 GATGCCAAGCCAAATTATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058578.2 ENSRNOG00000060017 ENSRNOT00000090002 2 1 1 80 7 125618321 125618339 GCTCGGATGAACAAAGGAC 59 125618098 125618278 TTAGTAGGCTTTGACCACGT 59 Novel Rattus norvegicus 81 AABR07027962.1 ENSRNOG00000054943 ENSRNOT00000081987 2 1 1 60 17 51204736 51204759 GGACATGATCAATAGATGGAAGAG 59 51203961 51203983 GCTGTGGATTCTCATAACATACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070355.1 ENSRNOG00000052489 ENSRNOT00000088648 2 1 1 86 8 66894517 66894536 GACTCAGTAAACAGGCTGTG 59 66893353 66894468 AACTAGCAGGAGGCTTCAC 59 Novel Rattus norvegicus 81 AABR07028055.1 ENSRNOG00000059796 ENSRNOT00000090292 1 1 1 80 17 54937091 54940859 AAGTGAAGGTCACAGGATCAG 60 54940900 54940919 CTGTTCACAGTGGCAAAGAC 60 Novel Rattus norvegicus 81 AABR07070486.1 ENSRNOG00000061552 ENSRNOT00000081548 3 1 1 81 8 72285274 72290378 CTACAACTGCGAGGTAAACTG 59 72290421 72290439 TCTGCGTCTCTTTAGTGCA 59 Novel Rattus norvegicus 81 AC141521.2 ENSRNOG00000053147 ENSRNOT00000091051 2 1 1 86 20 5783099 5783118 TGATCCTCCTGAAGTACCGA 60 5782923 5783056 GAACCACATCTATGATCTTCTTCAC 60 Novel Rattus norvegicus 81 AABR07059002.1 ENSRNOG00000056565 ENSRNOT00000080318 2 1 1 80 4 732947 732965 TGAAGCTTACGGTTCATGC 59 733009 733194 TAGAGAAAGGGTCTGGCTC 58 Novel Rattus norvegicus 81 AABR07028172.1 ENSRNOG00000058305 ENSRNOT00000090957 3 1 1 60 17 58680108 58680126 ATTCAGCTCAGCAGAAAGC 59 58678139 58680085 AATCTGGTACAAAGACACCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07059239.1 ENSRNOG00000053011 ENSRNOT00000088521 1 1 1 88 4 10566667 10582640 CTGGTGTAAAGGAGCTGTG 58 10566597 10566615 TAACAGGGTTCCACTTGGT 59 Novel Rattus norvegicus 81 AABR07044652.1 ENSRNOG00000051374 ENSRNOT00000091690 1 1 1 94 20 15347015 15359789 GATGGAAGTTGTGACAGGG 58 15346939 15346958 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AABR07044652.1 ENSRNOG00000051374 ENSRNOT00000091690 2 1 1 95 20 15347016 15359790 TGATGGAAGTTGTGACAGG 57 15346939 15346958 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AABR07008014.1 ENSRNOG00000053767 ENSRNOT00000082443 1 1 1 61 2 38913443 38913461 CAGGAGTTAAGAGGCTCAC 57 38909659 38909677 AAAGAGACAACCTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 1 1 1 65 8 84681147 84681166 GAAAGAAACAAATGCCAGGG 58 84671566 84681119 TTTGAAGAGGCTCTTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044794.1 ENSRNOG00000056554 ENSRNOT00000080565 2 1 1 85 20 20893583 20894529 CTAGCACAGGGAAAGAAGG 58 20894578 20894596 CTCTGAGACTCTAGCCGAG 58 Novel Rattus norvegicus 81 AABR07070816.2 ENSRNOG00000054728 ENSRNOT00000090962 2 1 1 85 8 85577140 85577380 ATTGTTTGGTTGGAGCATGG 60 85577426 85577446 TGCCATCTAGGACAATTTCGA 60 Novel Rattus norvegicus 81 AABR07044796.1 ENSRNOG00000055711 ENSRNOT00000089837 2 1 1 80 20 20925349 20930984 TGGAGTTTCCTCAGTTCGT 59 20931023 20931046 CAGTTCATGATCTACAGAATCCTG 59 Novel Rattus norvegicus 81 AC141220.1 ENSRNOG00000059795 ENSRNOT00000083975 1 1 1 60 17 76305660 76305678 CATCACTGCCTTCTCACAG 58 76306270 76306288 AGTTCCAGAGTACAGCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008107.1 ENSRNOG00000054714 ENSRNOT00000085763 1 1 1 60 2 43788868 43788889 TACATTCCATGATCCTAAGCAG 58 43783153 43783172 TCTGCTGAAGTCTCTATGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044820.2 ENSRNOG00000059723 ENSRNOT00000081132 1 1 1 80 20 22201967 22201988 TAGAGGTCTACCCTTAATGTGG 59 22199960 22201927 CCTCAGAGCCAATTCATAGG 58 Novel Rattus norvegicus 81 AABR07044820.2 ENSRNOG00000059723 ENSRNOT00000081132 2 1 1 80 20 22201967 22201987 AGAGGTCTACCCTTAATGTGG 59 22199959 22201927 ACCTCAGAGCCAATTCATAGG 60 Novel Rattus norvegicus 81 AABR07044820.1 ENSRNOG00000054712 ENSRNOT00000078940 2 1 1 84 20 22265149 22274436 CTGTTACAGGTCTATCTACAAACC 59 22274479 22274497 CTTCCTTTCCCAAAGGTGG 58 Novel Rattus norvegicus 81 AABR07044825.1 ENSRNOG00000057203 ENSRNOT00000089779 3 1 1 66 20 22491987 22492007 GCTTATCCGGAGTTCTTTACC 59 22491248 22491962 CCCTTCAGGAGTCTATATTGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044837.1 ENSRNOG00000052735 ENSRNOT00000091412 3 1 1 81 20 23045660 23045678 AAGTGTCACTATGGTCCCT 58 23045723 23046628 GACTCAGGAGGTCTGAGTC 59 Novel Rattus norvegicus 81 AABR07028765.2 ENSRNOG00000059052 ENSRNOT00000087204 3 1 1 60 17 85196143 85196161 TTGTCGGCTACGTAAGGAC 60 85194669 85194687 TAGGGACGGTCATCAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044837.2 ENSRNOG00000060235 ENSRNOT00000088740 1 1 1 84 20 23073705 23073723 TGAACAAGAGTGGGACCAG 59 23083563 23083584 GTTATAGACAGATGAGACTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071198.1 ENSRNOG00000053034 ENSRNOT00000091570 2 1 1 80 8 104362466 104362485 CCTTGGAAACAATGTCCTGG 59 104359914 104362424 GGCAGTTTACCTGACTTCCT 60 Novel Rattus norvegicus 81 AABR07071199.2 ENSRNOG00000060001 ENSRNOT00000078201 1 1 1 80 8 104389036 104390964 CCTCAGGAAGTTTATGCTTGTG 60 104388977 104388995 GTCATAAGCAGAGGCTCCA 59 Novel Rattus norvegicus 81 AABR07008256.1 ENSRNOG00000052551 ENSRNOT00000077833 1 1 1 80 2 49790334 49790353 TCTCTACAAGCCAGAACCTC 59 49790395 49790771 GACTCCAGATGAAAGCACAG 59 Novel Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 2 1 1 68 17 89510901 89511665 TACAGGAAGAAGCTGCCTC 59 89510851 89510873 GCTCCATCGACATGATATAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 2 2 2 84 20 41022102 41023152 TGTTGACTGGTAGATCCCAG 59 41022037 41022055 TCATCTTCTCCTAGCGCTG 59 Novel Rattus norvegicus 81 AABR07071512.1 ENSRNOG00000055306 ENSRNOT00000080248 1 1 1 80 8 119317431 119319361 CTTCTTGACAAAGTTCACAGAG 58 119319401 119319420 AAGTCTGGTTCACAACAGAG 58 Novel Rattus norvegicus 81 AABR07045403.1 ENSRNOG00000058135 ENSRNOT00000087000 2 1 1 80 20 46420553 46421376 TCTCAGAGCTCTATGAAGCC 59 46421418 46421437 CAAATTCATCGTCTTTGCCC 58 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 1 1 1 63 2 65010648 65011737 TGAGCACACTTTCTATGGAG 57 65010604 65010623 TGACTAGGGTATGTCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043825.1 ENSRNOG00000060265 ENSRNOT00000082679 2 1 1 96 19 42516281 42516302 AAATCTCTTCCTCAGGTTTGTG 59 42456190 42516224 CTTCTTCAGGGCGAAAGTC 59 Novel Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 1 1 1 60 19 48569145 48572979 AGAGCAAAGAGCAAAGGTG 58 48569103 48569124 CCGTTATAATTGCTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008898.1 ENSRNOG00000059376 ENSRNOT00000091379 1 1 1 110 2 77667185 77667204 GGCAGTAGAAGAGACCTGTG 60 77667277 77670350 GTTTCATGCCTCTGTGCTG 60 Novel Rattus norvegicus 81 AABR07044075.1 ENSRNOG00000054967 ENSRNOT00000085215 1 1 1 100 19 56367187 56368457 TTAACTGACAGGCTTGCTG 58 56368519 56368539 GTAGCTGGATGATACTCAGAG 57 Novel Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 2 1 1 72 7 138150141 138150663 AACTCTCCATACACTGCAGG 60 138150088 138150108 TGAAGGTGTAACTTGTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058816.1 ENSRNOG00000061549 ENSRNOT00000088445 3 1 1 134 7 138437925 138437945 GATATGAAACAGAGATGCCGC 60 138438041 138449696 ATTGGCAGCTCCTGATCAG 60 Novel Rattus norvegicus 81 AABR07058907.2 ENSRNOG00000059554 ENSRNOT00000082231 2 1 1 61 7 142301437 142301455 CACTAGGAAGCCAGACAGG 60 142301827 142301845 GAGGCCCTGTTTCAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010330.1 ENSRNOG00000054694 ENSRNOT00000083936 1 1 1 80 2 132338476 132339214 AGGAAAGTCCTATAGCAGGA 57 132338415 132338435 ATGACCTTAGAACGTCTTCAG 58 Novel Rattus norvegicus 81 AABR07012131.2 ENSRNOG00000060439 ENSRNOT00000089636 2 1 1 60 2 186751426 186751445 TAGAACTGCTTGGTGTCCTG 60 186751197 186751215 GCTAAGTTACCCAGGACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 2 1 1 62 14 3983313 3993508 GTTCCCAATGTGCACTGAC 60 3983269 3983289 TTCTGTTTCTTGGCAACTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014387.1 ENSRNOG00000055646 ENSRNOT00000084435 1 1 1 69 14 13521372 13521390 CAGTGTGCAGCTTTACTGG 59 13524428 13524446 TCAGGATCAGGAAGGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014638.1 ENSRNOG00000060037 ENSRNOT00000086758 3 1 1 61 14 24182802 24182821 TTAACATGTCATCAGGGAGC 58 24187961 24187980 CATCGAGGACTTACTTGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012762.1 ENSRNOG00000055862 ENSRNOT00000087719 2 1 1 90 2 206753178 206777987 TTTCGTTCCTGACACAGGA 59 206753106 206753124 CTCTGTGTAAACGTTGCCG 60 Novel Rattus norvegicus 81 AABR07013140.1 ENSRNOG00000056951 ENSRNOT00000091134 1 1 1 104 2 224408728 224418839 GAATGAAGATGGAGAAGAAGCA 59 224418901 224418922 TTAAATAAGGGTGGTCCTTCAG 58 Novel Rattus norvegicus 81 AABR07013323.1 ENSRNOG00000054971 ENSRNOT00000081788 3 1 1 80 2 233448999 233449017 CTGAAAGGGAATCTCCTGC 58 233444062 233448956 TATGTGTAACCTCAGGAACG 57 Novel Rattus norvegicus 81 AABR07013639.1 ENSRNOG00000055914 ENSRNOT00000089942 3 1 1 80 2 248079624 248081859 CTCAAGTAAGGTAATAAGACCCG 59 248081898 248081917 TACGTCAGCATCACATAGCT 59 Novel Rattus norvegicus 81 AABR07013686.1 ENSRNOG00000055290 ENSRNOT00000087168 3 1 1 80 2 250349589 250352325 ATAATATCCAGTCCTGTACGCC 60 250349530 250349549 GGCTTGCTCCTTAATACAGC 59 Novel Rattus norvegicus 81 AABR07013701.1 ENSRNOG00000057834 ENSRNOT00000090803 3 1 1 85 2 251535205 251535223 CTTCTCACCTCCTCTGCTG 60 251535271 251606324 GGAATTGTCTTCTCCACACC 59 Novel Rattus norvegicus 81 AABR07013718.1 ENSRNOG00000054185 ENSRNOT00000084675 3 1 1 80 2 252869508 252872347 CTCAAGCGGTCTCTAAACTC 58 252869447 252869466 ACAAAGTTGTTTGATGTCCG 57 Novel Rattus norvegicus 81 AABR07013764.3 ENSRNOG00000061178 ENSRNOT00000090909 1 1 1 80 2 255455524 255455542 GTGCACTATTCTGGAGGAG 57 255455025 255455483 TCTATTCTCCTGAAAGTGACAC 58 Novel Rattus norvegicus 81 AABR07013764.3 ENSRNOG00000061178 ENSRNOT00000090909 2 1 1 81 2 255455525 255455543 AGTGCACTATTCTGGAGGA 58 255455025 255455483 TCTATTCTCCTGAAAGTGACAC 58 Novel Rattus norvegicus 81 AABR07013788.1 ENSRNOG00000055552 ENSRNOT00000084573 2 1 1 75 2 256767239 256767257 GTAGTCGGTTCTCCCAGAC 59 256767763 256767781 CAGTCCTTGAATGCTGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 3 1 1 65 1 149718225 149718243 TTTGTCCTTGCAAGTGTGC 60 149718267 149718291 GACTACATTAGAATGACAGAAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 1 1 1 60 10 101989816 101989834 CACTGAAAGCCAAGAGTGG 59 101989860 101989878 CCATTCCAGAGCCTTAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 2 1 1 64 18 45960515 45960535 AACTGGATTTCCATCTCTGTC 58 45960561 45960581 GCAAATCAGAACTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 2 1 1 62 1 165559986 165560004 AGCTCAAGGATGCAGTCTG 60 165559940 165559960 AGATAAGTAGGTCCTCTTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061577.1 ENSRNOG00000061726 ENSRNOT00000077970 2 1 1 80 4 134398445 134398766 AGAAGGAAGAAATGAGCAGAG 58 134398807 134398826 TACAAATCAGCGTGTAACCA 58 Novel Rattus norvegicus 81 AABR07038464.1 ENSRNOG00000061492 ENSRNOT00000085116 2 1 1 84 X 50184662 50184681 GAAAGAGGAGAGGTACTTGG 57 50184519 50184615 TTGCCTTGTATGTACGTGG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041737 ENSRNOT00000063490 1 1 1 60 1 70440763 70440783 CCTGATTAGTTCTTGGATGGG 58 70440723 70440743 ACATCAGTAGATCCCTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099294.1 ENSRNOG00000029315 ENSRNOT00000050814 1 1 1 60 1 224929612 224929635 GTTAAGAGATGGACTAAGAAGGTG 59 224929652 224929672 GGATGGGAATCAACAGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052408 ENSRNOT00000086506 3 1 1 62 4 52291573 52291591 GTGTCAGTAGGTGGCAGAG 60 52291529 52291549 GATGTTCTTTGGTTGGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041852 ENSRNOT00000063605 2 1 1 60 1 252987429 252987447 GGAAGCTAAACAACGTTGG 57 252987469 252987489 TAGCACAGTAAGCCATTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061653 ENSRNOT00000077241 1 1 1 60 17 80531861 80531879 GGTCTAAAGGTATCGCCTC 57 80531903 80531921 TGCTTTAGCAAGGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053838 ENSRNOT00000081101 3 1 1 60 1 116710518 116710539 CAACAGAAAGTCAAGAACAGGA 59 116710479 116710499 CTGAGCGTAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 1 2 2 80 5 77432995 77433016 GAGTGCAGGGAACTATATTTGG 59 77246989 77432956 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 2 2 2 80 9 4269296 4269316 GTCAGATTCAGACCTTCAAGG 59 4269356 4269724 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 3 2 3 80 9 4093076 4093095 ACAACTGGAGTCAGATTCAG 57 4093137 4095003 ATGTTGTCCCTGATTTAGGG 57 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079 2 1 2 80 7 142861356 142868588 TTCTTCCTGATGGAAGACCT 58 142861295 142861314 GCTTCCATTTGTAGACTGCT 58 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 1 2 2 85 4 114818608 114818767 ATGAACTCTGGTGGTTCTG 57 114818541 114818559 GAGTTTAGCTCTTCGGTGG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000056307 ENSRNOT00000081069 1 1 1 60 12 28114695 28114714 CCTAAAGGTTAAACAGGGCC 59 28114654 28114672 AGTTTACCATGCAGTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054447 ENSRNOT00000084930 3 1 1 60 1 76281396 76281418 GATACAGAGAAGATTAGCATGGC 59 76281438 76281456 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000076044 3 1 4 92 5 171667073 171668416 AGGCTAAGAACCAGAGCTC 59 171666999 171667017 CTCAGAGGTGGTTGATGGG 60 Novel Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 2 1 1 89 13 77850594 77850613 AAGATGCCATTTGGAAGCTG 59 77876040 77876058 GAAACTCAGATGCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059719 ENSRNOT00000083762 1 1 1 60 10 97019575 97019594 TTATTGATCCGTTTGCCTCC 58 97019616 97019635 CCTATCAAGAAGGCATGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055805.1 ENSRNOG00000047335 ENSRNOT00000044932 2 1 1 86 7 10194590 10194611 CTATGAATGTGATCAGTGTGGT 58 10194523 10194546 CATAGGGTTTCTCCAGTATGAG 58 Novel Rattus norvegicus 81 AABR07059925.1 ENSRNOG00000052702 ENSRNOT00000090618 3 1 1 60 4 43915815 43915835 GGCCATGAAAGACGATATCAC 59 43915854 43915875 TTTCTTGTTGTCATCTGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032277.2 ENSRNOG00000057224 ENSRNOT00000080030 1 1 1 84 18 59328745 59328766 CCTGAAGTGGAATAATCTTGGA 58 59328811 59328831 TGAACAGAAACACAGTCCC 58 Novel Rattus norvegicus 81 SNORA64 ENSRNOG00000059404 ENSRNOT00000081773 2 1 1 61 10 14089025 14089043 TTACCCGTGTGACTTTCGT 59 14089067 14089086 CAATCCCAAGTACTGGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057902 ENSRNOT00000090295 3 1 1 60 1 194743838 194743857 GTTGGAATAGGATCTTGCCC 58 194743797 194743818 CCAGAAGTACTGCAATACTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.1 ENSRNOG00000051467 ENSRNOT00000086881 2 1 1 63 2 210002113 210002131 CAGAAGAGCATCGCTTCTC 58 210002068 210002092 CTGCTCTTCTGTTATCATACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049862.2 ENSRNOG00000061027 ENSRNOT00000080301 1 1 1 102 5 141487797 141487817 CCGAAGAACATACTTGGAGAG 58 141487881 141487901 TGATGTGAGTCTCACCAGG 59 Novel Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 2 1 1 60 8 42786935 42786954 CCCTCTTCCTTCTGTTCCTG 60 42786980 42786998 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 2 1 1 65 1 158864625 158864643 TGCCAGTATCTGTTGTCAC 58 158864674 158864692 CTGAGATTCCACCTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968 2 1 4 97 9 88253749 88253767 CTCCAGGTAAGCTCTTGGT 59 88246708 88253688 AGGTTCACCTTCTGGACTG 59 Novel Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 3 2 2 102 2 208543591 208545141 CTTTCACCTGGCACTTCAG 59 208550239 208550260 GTACACAAACGATCAGAATGGA 59 Novel Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 1 3 4 133 9 81644546 81644564 CAAAGCCAAGGATCACCAC 59 81644661 81645112 TATCCTCCAACCGGAAGGA 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000051646 ENSRNOT00000084279 3 1 1 62 15 39604341 39604363 GGAACGATACAGAGAAGATTAGC 59 39604301 39604321 ACAGTTAGGTACTCTGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043155.1 ENSRNOG00000045527 ENSRNOT00000054527 2 1 1 61 19 24038231 24038252 CTTGCTTAATGCTAAGAAAGCG 59 24038191 24038209 CTAGCCTTTAACGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133273.1 ENSRNOG00000002486 ENSRNOT00000003363 2 1 1 71 10 34593465 34593484 CTATTCTGAGAGCAAGGGCA 60 34593520 34593538 ATCAGAGGGTTGAGCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052146 ENSRNOT00000089834 2 1 1 60 13 65465874 65465892 ACATATGCATCAATCGGCA 58 65465832 65465853 GACAGAACACTTGAGTTTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052146 ENSRNOT00000089834 3 1 1 61 13 65465873 65465892 ACATATGCATCAATCGGCAG 59 65465831 65465853 GGACAGAACACTTGAGTTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054366 ENSRNOT00000082041 1 1 1 60 13 97260095 97260117 GGAACGATACAGAAGAGATTAGC 59 97260057 97260075 CTTCACGAATTTGCGAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043040.1 ENSRNOG00000056923 ENSRNOT00000080685 2 1 1 60 19 18820070 18820094 GCTCTATGAGTTACAATTCTGTAGG 59 18820109 18820130 AAAGAATTCTATGTGCTGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 1 1 1 88 2 209779298 209779316 CTTGGATGACAGTGCAGTG 59 209779369 209779387 CTTTCCTTCACGTGAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 1 2 2 140 10 89173861 89174649 ATTTCCTAGCAGCACAAGG 58 89174752 89174993 GGCTGTAACGTAAAGAAGGG 59 Novel Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 3 1 1 62 9 4107560 4107578 AGACTTTCCTCAGCCTGTG 59 4107660 4107684 CACGTAGTTTCTATCAGTATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 2 1 1 73 20 628725 628746 TCTCTGCTATACCACTTCTACC 59 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 2 1 1 60 18 7344101 7344121 CAGATGGTCCAAATAAAGCAG 57 7348991 7349010 CTCTTGAGACTAGGAGTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000062051 3 1 2 96 1 1440117 1440396 AACCAAGACCAGTGGTCAC 60 1440039 1440059 ACTGATGTTGAATTCCCAGGA 60 Novel Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 1 1 1 70 14 44876772 44876790 CCATCACCTCCCATAATCG 58 44872724 44872745 GTGGGATATAATTTACTCCGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 3 1 1 116 14 82289301 82289319 TACCCTGTCTGGAGTCCTC 60 82288645 82288664 GATACCTGAGGTCTTGGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 1 1 1 85 1 30666704 30666722 TACACAGTCCACCAGTGAG 59 30666151 30666169 AAAGTAAGATGCCCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 1 1 1 79 10 102746180 102746203 CACTACTCTTCAACTGAATACCAG 59 102746347 102746365 CTCCTGGAACATCTGGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 2 1 1 60 11 11653069 11653088 TGGATTCTACTGATCCAGCT 58 11641724 11641743 CGTCTTGTATGATTGGCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 2 1 1 71 5 133892896 133892915 GACTCAAGAGCTTCCTTCTC 58 133890125 133890143 CTTCTTGTCCACTCAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 2 1 2 63 18 50434461 50434479 ACTTCAGATTGGGAGAGCA 58 50430228 50430249 CCTTTCTCCAGTTCCTAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 2 1 1 60 6 36846740 36846759 ACAAACAGCACTGTTGACAG 59 36855893 36855912 ATTAAATGTCGCAGGACCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 3 1 1 60 6 39679929 39679949 TATCCAGCATCTAGAAGAGCT 58 39692686 39692704 AGAATGGCATGCAGTTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 2 2 2 94 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081100 167081118 CAAGTTGTTTGTCTGGACG 57 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 1 1 1 113 3 3955837 3955855 CTTCTTAGCCTGGCCAGAG 60 3956367 3956385 AAAGAGGTTAGGTGCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000083718 3 1 2 124 3 4734108 4734220 CAGTCTACCATGCTGATGG 58 4734773 4734791 TACTGAGGAGTGGGTTCTG 58 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 3 1 1 103 18 85816869 85816887 TTGGAGCTATTGTCGTGTG 58 85814316 85814335 ATTCTTCTTGAAGGTGTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 2 1 1 60 3 33949861 33949882 GGAGCATCTAAGTGTTTCTTGG 59 33949901 33949921 CATCCTGAACCTTATCACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000091301 2 1 2 84 6 128999057 129000092 GCTGGAAGACTGTGTTCTC 58 128998991 128999010 CTGGTAATGGATGACATGCT 58 Novel Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 3 2 2 88 6 133668569 133676830 CTGGAATAGGCCAACATCG 58 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 2 2 2 83 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228241 74228469 TTTAGCTTGTTGCACTCGT 58 Novel Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 2 1 1 60 3 80966036 80966056 CACCATGGCCATTATTACCTC 59 80968160 80968178 AGTCCACAGACATGTGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 3 1 1 75 6 142405368 142405386 ATGTTGGTCCTGAAGTTGG 58 142405206 142405224 CAGACTCAACAAGCTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 1 1 1 60 3 90974800 90974818 CTCTGTGAGAAGGAGGCTG 60 90965801 90965821 GCATAAGCCCACCAATTAGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 1 1 1 60 12 6602695 6602714 GATCCTCTATGGCGATGACC 60 6592709 6592730 TTCACCTACAGATGTCAGAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 3 1 1 72 1 141675221 141675241 TGTAAGAAAGAAGAAAGGCGG 59 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537 3 1 2 81 3 108640509 108640529 TCCGTCGTTCATTCTTTAAGC 59 108640273 108640468 TTCATTTGCTTCCTGACATGC 60 Novel Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 1 1 1 61 3 125025753 125025773 GCTTACACAGCTGTTCTACAG 59 125023186 125023205 GGACAACTTTGTGTCCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 3 1 1 61 16 29993385 29993406 TTCTGGGATGCTTTCAATACTG 59 29983978 29983998 CTTAACTCCTTTCTCCAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 2 1 1 62 3 130601350 130601368 ATTTGCCAAAGTGTTTGGG 57 130594877 130594897 GGCTTATTCTCATTCTCCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 2 1 1 125 3 155687632 155687651 GAAGAAGATCTTCGCTGGTC 59 155679346 155679364 ATAGACATGGCACTGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 1 1 1 60 9 69756805 69756825 TTTATCGGTTACTTCTGCCTC 58 69770260 69770279 GAGTGTTCAAAGCTTCACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 2 1 1 65 1 244877701 244877719 AAGGAAAGGAGGCCATCAG 59 244907915 244907933 CCTCTAAGTGCACTGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 1 1 1 81 7 23251349 23251367 TAAAGCCACACCTCAAGGG 60 23198286 23198308 GGTGAATATAGGTAGTCAATCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 1 1 1 86 7 24031881 24031899 CTTGATTCACGTGGGTCCT 60 24034093 24034111 AAAGGCTACCACAGTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 3 1 1 113 1 251400935 251400953 TGTAGTCACTGCTGAAGCA 59 251387929 251387947 AAACCTGTAGGTTGTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 3 2 3 88 17 20998249 20998268 AAAGCTCTCCCTATTTCTGG 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 2 2 3 105 8 23492941 23495981 CGAACACAAGACCAAGAGAC 59 23496047 23509002 TTCCTTTCAACCTTGCTTCTG 59 Novel Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 1 1 1 73 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82411833 82411851 ATGGTTTGGACACAGAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 1 2 2 80 19 38366016 38366034 CCAGTGAGACCAAGAAGAC 58 38365660 38365975 CTGTAACATTCAGAACGATGAC 58 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 1 2 2 96 19 38370078 38385841 AGTTCCATTGTGATGATATGGC 59 38366103 38370021 GCTGACACCACTCTCAGAG 60 Novel Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 1 1 1 81 20 14912431 14912450 GTTCTGAGATCCAAGAAGCA 58 14912235 14912253 TCTTGACACGGTAGCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 1 1 1 62 2 44647332 44647350 GGTGTACACGTCATCTGAC 58 44645820 44645838 TTCCGATTAGCATTGGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 2 1 1 76 2 49857578 49857601 GTGGATCTGAAGTGTTATGAACTC 60 49908084 49908108 GGAGATAATAATTTCACCATGTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 2 1 1 60 4 59202820 59202840 GCAAACTTTACTACTGCTGAG 57 59196383 59196401 AAACTCTAGCACGTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308 1 1 2 80 20 45681163 45681181 AACAGGTCACAGGAAAGCA 60 45681225 45683141 TGTCCATGACCTGTCTCTG 59 Novel Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650 2 1 2 80 4 68428219 68428803 TTCTGCATGAGTTTCTGGC 59 68428847 68428865 GACTGACTAGGAAGGCTGG 59 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 2 1 1 87 8 129157622 129157640 GAACCTAAGTCGGAGGCAG 60 129156217 129156240 CATCTGAGAAACCATGTGATACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 2 1 1 78 2 82771679 82771700 GGTAATTGTTGTGACACATGAG 58 82772712 82772731 TGAATTCTTACACTGGAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 2 1 1 65 2 87734905 87734924 TAATCAGCCCTAAGCTCACC 59 87785160 87785178 AAACACTCCAATGAGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 1 1 1 100 14 24842982 24843001 GTAGTACTACATGTGCCCAG 58 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd2 ENSRNOG00000031033 ENSRNOT00000040993 3 1 1 60 MT 4366 4387 ACCATTCTCGCAATTTCATCAG 60 4407 4426 TTTGGGTCTGGTTAAGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3d19 ENSRNOG00000011752 ENSRNOT00000015802 2 1 1 80 2 185411903 185413966 AGGAAATACATGCTGTCGG 58 185414010 185414028 CTTACAGGAGAGTTCCGTG 57 NA Rattus norvegicus 81 Impa1 ENSRNOG00000010482 ENSRNOT00000014274 3 1 1 80 2 93683673 93683691 TGTATACGGGCAGGAAAGG 59 93683732 93685268 ATTTGGTAATGTCTTCCTGCTG 59 NA Rattus norvegicus 81 LOC100912421 ENSRNOG00000031027 ENSRNOT00000049593 1 1 1 60 5 137514842 137514861 TCTATAACATTGCCACAGCC 58 137514801 137514821 ACATCCTTGTTCCTTAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040792.1 ENSRNOG00000037611 ENSRNOT00000043861 3 1 1 60 X 110342986 110343004 GGCCTGAAATCGAAGAGGT 60 110343027 110343046 TCACCGTTCCAGATATACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2ab ENSRNOG00000048317 ENSRNOT00000048582 2 1 1 60 2 198360046 198360064 TAGGAGGAGTCACCATTGC 59 198360088 198360106 GGTAGTAAGACAGCCTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2ac ENSRNOG00000030736 ENSRNOT00000051917 3 1 1 66 2 198360438 198360456 AAGAAGACCCGCATCATCC 60 198360390 198360409 GCTTGTTGAGTTCTTCGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 1 3 3 86 5 171525695 171544602 AAACCTGCCAAGATGTGGA 60 171544652 171544670 CACAGAGGTAAGAACCGGG 60 NA Rattus norvegicus 81 Olr1687 ENSRNOG00000046708 ENSRNOT00000074145 2 1 1 60 20 650342 650362 TCACACTCTTCTATGGCTCAG 59 650383 650402 GGTGAATGGCTAGATTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r47 ENSRNOG00000028345 ENSRNOT00000057657 3 1 1 90 2 155381622 155381642 AGCAGGAATTATTGGATCAGG 58 155378938 155381570 AGTATAGCCCACCTGACTC 58 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 1 2 2 81 2 52505527 52507204 AATGCCAGGTCTGTAACAG 58 52505464 52505483 TTGGGTTTATCTCCAGTGTG 58 NA Rattus norvegicus 81 Sgcg ENSRNOG00000014603 ENSRNOT00000019639 3 1 1 87 15 41579256 41579274 TATCCTCCTCACCATCCTC 57 41567677 41579206 GTGACCCATTCCTATTGGAG 58 NA Rattus norvegicus 81 Hyls1 ENSRNOG00000012980 ENSRNOT00000017330 3 1 1 60 8 36764088 36764108 GCCAGTAATGAAGAGGAAGGT 60 36764048 36764066 ATCTGTCACCAGCACTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebpl ENSRNOG00000014659 ENSRNOT00000020036 1 1 1 81 15 41669551 41669569 TGTCTTGGATGGGTTCCTG 59 41668821 41669509 GGTAATCTGTACGAAATGCCTG 60 NA Rattus norvegicus 81 Vom1r25 ENSRNOG00000030899 ENSRNOT00000050899 1 1 1 60 8 3541061 3541085 CATGTACTGTTCTTATCTTGGTGAC 60 3541100 3541121 GAAATGGAAGACAGACAAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifnar2 ENSRNOG00000045668 ENSRNOT00000072856 2 1 1 80 11 31554017 31554035 GAGCACCGTCATAATGCTG 59 31554078 31557959 AAGTGATGGAAGTTCAAGGC 59 NA Rattus norvegicus 81 Ifnar2 ENSRNOG00000045668 ENSRNOT00000072856 3 1 1 80 11 31541589 31543732 CACAATCATGAGCAAAGCTG 58 31543773 31543793 TCAGTCACATCACATAATGGC 59 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000011742 1 1 2 80 15 37408544 37409597 TGGCTGTTATTGAAAGGTGAC 59 37408484 37408502 TCAGCAGTGTTAGTGGTGG 60 NA InUTR Rattus norvegicus 81 Igll1 ENSRNOG00000025990 ENSRNOT00000029851 2 1 1 122 11 88388465 88388485 GGTGTCCACCATATACTTTCC 58 88388569 88389652 GATCTGGAACAGGAACCTG 58 NA Rattus norvegicus 81 Stoml1 ENSRNOG00000008530 ENSRNOT00000011383 3 1 1 91 8 63038834 63040465 CTCTGAAGATTGTGCCCAC 59 63040519 63040538 CAAGAGAAGAACCATGCCAG 59 NA Rattus norvegicus 81 LOC100365810 ENSRNOG00000045885 ENSRNOT00000073068 2 1 1 60 8 105088097 105088119 ATCATTGAGGTAGATCCTGACAC 60 105088059 105088077 AGAGACTGCCAAAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hcn4 ENSRNOG00000009450 ENSRNOT00000012644 1 1 1 80 8 63634272 63634290 CAGGGCAAGATGTTTGACG 60 63634329 63634460 GCAGTTAAAGTTGATGATCTCCTC 60 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 2 2 2 80 2 143926240 143926722 TGTGTTTGATGACACTTTGC 58 143926179 143926200 ATTACTACGGTTAAGGTTCCTG 58 NA Rattus norvegicus 81 Limd1 ENSRNOG00000004837 ENSRNOT00000006554 2 1 1 80 8 132589810 132595140 TTATGGACATGATCCTACAGGC 60 132595178 132595199 CTAGACACTCATTGCAGATGAC 59 NA Rattus norvegicus 81 Olr1549 ENSRNOG00000057043 ENSRNOT00000083800 2 1 1 60 11 43487680 43487698 CCCTCTATCTCAGGAAGCA 58 43487719 43487740 TATGACTGCATAAAGCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 2 2 2 93 11 32777409 32807361 AAAGTCAGATGCAGGATGC 58 32777334 32777352 ACAGAAGAGGTGATGGACC 59 NA Rattus norvegicus 81 Rup2 ENSRNOG00000045799 ENSRNOT00000042860 1 1 1 81 8 41658686 41659160 GTAGTAACCACTCGAGATGGA 59 41659203 41659221 TTCCATGCTCAACAGTCGT 60 NA Rattus norvegicus 81 Rup2 ENSRNOG00000045799 ENSRNOT00000042860 2 1 1 81 8 41658688 41659160 AGTAACCACTCGAGATGGA 57 41659205 41659223 ACTTCCATGCTCAACAGTC 58 NA Rattus norvegicus 81 Dyrk1a ENSRNOG00000001662 ENSRNOT00000050342 2 1 1 84 11 34922268 34922287 AACATAAGTGACCAGCAGGT 59 34922334 34926993 CAATGTCAGGCATCACCTG 59 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000066940 2 1 2 87 11 35098841 35099370 AGTTGACAAGACTGACAGC 58 35098772 35098790 AACTTTGGCTGGTGAATGG 59 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000079955,ENSRNOT00000066940 2 2 2 61 11 35097931 35097949 CATCCTGGAGGGAATGGTG 60 35026281 35026299 TGATGTAGGAGCTTCGAGC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561590 ENSRNOG00000010732 ENSRNOT00000014397 1 1 1 80 15 38069676 38072777 CAGATCTACACCTGGATGGA 58 38072820 38072838 CTTCTTTCTGGCTTCTGGG 58 NA Rattus norvegicus 81 RGD1560112 ENSRNOG00000050155 ENSRNOT00000074943 3 1 1 81 8 41553283 41554121 ACTCCCTCCAAGCTTTGAC 60 41554166 41554184 TGACAGCATCCTTCTCCTC 59 NA Rattus norvegicus 81 Olr202 ENSRNOG00000025819 ENSRNOT00000035798 3 1 1 60 1 170185855 170185875 TAACATTTGGTACGGCTTCTC 59 170185815 170185834 AATGAGGATCACATCCACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb ENSRNOG00000058566 ENSRNOT00000089411 2 1 1 106 20 5185421 5185444 TGTGGATTCTATACTAGATCCAGG 59 5185509 5185881 TCATCCAAGCGCCTATGAG 60 NA Rattus norvegicus 81 Rnf17 ENSRNOG00000008059 ENSRNOT00000010795 2 1 1 80 15 36706614 36706636 GAGCATATGTAATGTGCTATCCC 59 36706674 36707455 TCCTCTAAACTCGTCAGTAGG 58 NA Rattus norvegicus 81 Olr186 ENSRNOG00000049981 ENSRNOT00000050034 3 1 1 60 1 169919810 169919828 TACAGCATGATCCTCACCA 58 169919849 169919870 TCCTGACTATGATGACTACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar7e ENSRNOG00000046903 ENSRNOT00000046379 3 1 1 60 1 22480346 22480365 TCTTTGGCTTTAGTGCTGTG 59 22480305 22480326 AGAATTGATGTCATCACCAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhf2 ENSRNOG00000026662 ENSRNOT00000037483 2 1 1 60 5 24242149 24242167 ACAGTCAGTCGTTGAAGTC 57 24242107 24242126 CTATCATCGTCATCGTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpcat1 ENSRNOG00000017930 ENSRNOT00000024111 1 1 1 80 1 32384513 32384531 AATATGTGGTCGCCTTGTC 58 32381996 32384472 ACCCATACATCTTAAATGCCAG 59 NA Rattus norvegicus 81 Sra1 ENSRNOG00000018089 ENSRNOT00000024671 3 1 1 80 18 29495299 29495321 TGAGACTCTAATAGAAGACGTGC 60 29494645 29495260 CATACCTGCTTCTTCGTGTG 59 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 3 2 2 80 2 43290924 43290943 ACGCTACGATTACTTTGCTC 59 43290985 43291084 TCCATATAGTCCGTAACGCC 59 NA Rattus norvegicus 81 Ehd2 ENSRNOG00000011346 ENSRNOT00000017353 2 1 1 170 1 77861218 77862729 CTTTCCTCAACAGGTTTATGTG 58 77855668 77855686 GCAAGATGATGAGGTCCAC 58 NA Rattus norvegicus 81 Gemin8 ENSRNOG00000029038 ENSRNOT00000048155 3 1 1 66 X 29825388 29825407 TAGATCCGTTGTTACCCACC 59 29817392 29825359 AAAGTCCAAGTGGGAACTC 57 NA DesignRelaxed, InUTR Rattus norvegicus 81 Tmco6 ENSRNOG00000017718 ENSRNOT00000038066 3 1 1 80 18 29584591 29584610 CATTGCTCTCCCTGAATCTG 59 29584653 29585019 CTGTAAGCACCAACATGCA 59 NA Rattus norvegicus 81 Ercc1 ENSRNOG00000017839 ENSRNOT00000024113 2 1 1 82 1 80262036 80262054 ACTACATCCATGAACGGCT 59 80262099 80263566 GGGATCTTTCACATCCACCT 60 NA Rattus norvegicus 81 Flad1 ENSRNOG00000020642 ENSRNOT00000028030 1 1 1 80 2 188728443 188728463 GACCTACAGAAACATCTGGGA 59 188728296 188728402 AGTGATGTGTACCCTCTGTC 59 NA Rattus norvegicus 81 Trmt10c ENSRNOG00000039567 ENSRNOT00000002198 3 1 1 84 11 47047377 47049852 GCGCTTTAAAGTGGTTCCTC 60 47049899 47049917 ATGGCACCAGATATCTGGC 60 NA InUTR Rattus norvegicus 81 AABR07006278.1 ENSRNOG00000020980 ENSRNOT00000028483 1 1 1 80 1 227901793 227901814 TAGAATTCTGCATTGCTGTGTC 59 227901854 227904514 GCACTACAAGAACCTCACTG 59 NA Rattus norvegicus 81 Cdc42ep5 ENSRNOG00000018616 ENSRNOT00000025110 3 1 1 61 1 73719209 73719227 CATTCTGTCCCTCCACCTG 60 73719252 73719270 GGTGAAGGAACTCGGAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911801 ENSRNOG00000049658 ENSRNOT00000071307 3 1 1 60 8 41358997 41359015 TCTTCAGGTAAGGGTTGGT 58 41359038 41359057 TAGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mageb3 ENSRNOG00000038269 ENSRNOT00000044910 3 1 1 60 X 54843258 54843279 GATGAGGCTTTGAAAGATGAGG 60 54843219 54843239 TTGTGTCACCAAATGTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020847.1 ENSRNOG00000049403 ENSRNOT00000073921 2 1 1 83 13 43514572 43514590 GTACATTAAGGCACTGGCA 58 43494703 43514527 TTCTTCAGATCATAGGCTGTC 57 NA Rattus norvegicus 81 Macc1 ENSRNOG00000037436 ENSRNOT00000056654 2 1 1 80 6 147380651 147380669 ACTAAGCATCAGATGCAGG 57 147380712 147392093 AGGTTTCCACATTGTCTCTG 58 NA Rattus norvegicus 81 Nudt3 ENSRNOG00000061176 ENSRNOT00000083169 3 1 1 84 20 7181689 7181707 GGATTGTTCCTGGAGGAGG 60 7161637 7181641 TTAACTCCAGCCTCCTCAC 59 NA Rattus norvegicus 81 LOC100911849 ENSRNOG00000045969 ENSRNOT00000072508 2 1 1 60 8 17964603 17964624 GGATTCTCTTAGAAACACAGCA 59 17964564 17964585 GAGTAAAGGAGGAACTACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000023732 2 1 2 82 1 98916796 98956079 GAGATTTCCAATGAGACAGATATGG 60 98916738 98916756 AGGCAGTGGTTCTTCTCTG 59 NA Rattus norvegicus 81 Smpx ENSRNOG00000007495 ENSRNOT00000010027 2 1 1 148 X 40071228 40082842 GTCAGATCCATTCAGGCCA 60 40063484 40063502 TTCATTCCAGGAACTGGCT 59 NA Rattus norvegicus 81 LOC100910373 ENSRNOG00000021490 ENSRNOT00000049921 3 1 1 81 8 44559165 44560410 GAAACATTGGTTCCCTCCTC 59 44559103 44559121 AGTCGGCTGTTTGTTTCTG 59 NA Rattus norvegicus 81 Mdga1 ENSRNOG00000000536 ENSRNOT00000048845 2 1 1 80 20 8533460 8533478 TACTACAACTGCACAGCCA 59 8530974 8533417 ATTCTTCAAGGATCGCACCA 60 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375,ENSRNOT00000079137 1 2 2 80 6 22249629 22249647 GCTGGATGAAGCTGTTCTC 59 22245146 22247124 AGTAGAAGTAGTCGTGTCTCC 59 NA Rattus norvegicus 81 LOC307727 ENSRNOG00000039726 ENSRNOT00000060930 3 1 1 79 X 10811684 10811702 CTATCAGGCTCAAAGGGAG 57 10811745 10818494 AAACTCCCTGAGTTCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Tdg ENSRNOG00000027124 ENSRNOT00000034213 3 1 1 80 7 27199493 27201492 CGGAAATCACTTCTGGAAGTG 59 27199433 27199451 GGTAAGGTGTGGTCATCCA 59 NA Rattus norvegicus 81 Olr1254 ENSRNOG00000050688 ENSRNOT00000052324 3 1 1 60 8 42381875 42381893 CCTCATCACTGCATTGGGA 60 42381833 42381852 AAGGTGAGAATTCAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 1 1 1 66 X 57187183 57187652 GGATCCTAAGAAGATCTCCAC 57 57187137 57187156 GTCTATTACATCTTGGCCCA 57 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 3 1 1 67 X 57187183 57187652 GGATCCTAAGAAGATCTCCAC 57 57187136 57187156 AGTCTATTACATCTTGGCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 1 2 2 80 4 64681870 64681888 ACATCCTCTTGGTCTTCCT 58 64660470 64681826 TTCACAGCATTCTCACTCC 58 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 3 2 2 80 4 64681870 64681889 CACATCCTCTTGGTCTTCCT 59 64660471 64681827 TCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Gnb2l1 ENSRNOG00000049070 ENSRNOT00000072179 1 1 1 60 12 35905785 35905803 AACTGCAAGCTGAAGACCA 60 35905743 35905761 AGACAGTCACCGTGTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem214 ENSRNOG00000008812 ENSRNOT00000011838 2 1 1 80 6 26871121 26871141 TAAGCACCTATCACAGTCCAG 59 26870627 26870825 CATTTCCGTGCCTTCTTGG 60 NA Rattus norvegicus 81 Ubl7 ENSRNOG00000007442 ENSRNOT00000010083 1 1 1 80 8 62698284 62699711 GAGCTGATAGATTTGATCTACTGTG 59 62699749 62699767 GGATCCAGGCTGAATACCA 59 NA Rattus norvegicus 81 Snx15 ENSRNOG00000021007 ENSRNOT00000028511 3 1 1 80 1 221496063 221496081 GACACTACACAGTTTCGGA 57 221491470 221496021 TCTTTGAGATGAACTGAGCAG 58 NA Rattus norvegicus 81 Lmcd1 ENSRNOG00000005690 ENSRNOT00000007523 2 1 1 80 4 144238935 144250818 AGTGGAATATGTCTGTGAGCT 59 144250860 144250878 CTGTATCCAGCCCTGTCAG 60 NA Rattus norvegicus 81 Mrgprb13 ENSRNOG00000049416 ENSRNOT00000072393 3 1 1 60 1 103630938 103630956 TTTCACTCCGTTCACATCC 58 103630896 103630914 GGTAAGCAAGTGTGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 2 2 5 80 1 87656304 87656327 CATCAGTAATTTCACTACTGGAGC 60 87656364 87656509 CAGACAGCAAATCTGGATACC 59 NA Rattus norvegicus 81 Mapre3 ENSRNOG00000008961 ENSRNOT00000011874 3 1 1 80 6 26889696 26889831 ATTGTTTCGAAACAGGTCTCAC 60 26882916 26882936 GAAGTGGAGTACACATTGACG 59 NA InUTR Rattus norvegicus 81 Mgp ENSRNOG00000005695 ENSRNOT00000007577 2 1 1 80 4 170858614 170860042 CCCTGTGCTATGAATCTCAC 58 170857569 170857589 TAAAGGTGTTGGCATTTCTCC 59 NA Rattus norvegicus 81 AC109737.1 ENSRNOG00000014312 ENSRNOT00000064892 3 1 1 83 4 70829206 70829224 AACTGGTCAGAGGACTCAC 59 70829270 70829787 TGAGGTGATTCCACAGTCTG 60 NA Rattus norvegicus 81 LOC100359550 ENSRNOG00000037978 ENSRNOT00000001672 1 1 1 60 12 38340236 38340254 AGAGATGCATCGAGTTCCT 58 38340194 38340214 CTATTTCTACCCTTCCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359550 ENSRNOG00000037978 ENSRNOT00000001672 2 1 1 60 12 38340235 38340253 GAGATGCATCGAGTTCCTG 58 38340193 38340212 GCTATTTCTACCCTTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem177 ENSRNOG00000025484 ENSRNOT00000039074 1 1 1 80 13 35931230 35933229 CAAGGTTGCTACAGAGTTGC 60 35931169 35931188 CATCCAGTCAGACACCTCAG 60 NA InUTR Rattus norvegicus 81 Acta2 ENSRNOG00000058039 ENSRNOT00000083468 3 1 1 80 1 252539593 252540951 TTTCATTGGAATGGAGTCGG 58 252539532 252539553 TCCTTCCTGATGTCAATATCAC 58 NA Rattus norvegicus 81 Insrr ENSRNOG00000057702 ENSRNOT00000080693 2 1 1 80 2 187179265 187180469 TGTCCAATTCAGCTACAGGA 59 187180512 187180530 CAGGATGTGGACGAAAGTC 58 NA Rattus norvegicus 81 Ly86 ENSRNOG00000000137 ENSRNOT00000000149 2 1 1 80 17 28105011 28113566 ATGTTCCACAGGGAGAATACC 60 28104951 28104969 CAGTGGCATTAGCACAAGC 60 NA Rattus norvegicus 81 Ly86 ENSRNOG00000000137 ENSRNOT00000000149 3 1 1 80 17 28113593 28145164 GAAAGGAGAGCAGATATACTATGC 59 28105001 28105020 AGCAAGAGCTGGTATTCTCC 60 NA Rattus norvegicus 81 LOC306766 ENSRNOG00000017133 ENSRNOT00000023125 3 1 1 81 17 10590306 10591299 ATCTTGACAAGACAGAGGAAGG 60 10591341 10591359 TTGTCTGAGCTGTCAGTGG 60 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000080413 2 1 2 80 14 84164896 84165592 CTCGGTCATAAACATGCTCTG 59 84164836 84164855 GAAACTGGGCAAAGAAGTGG 60 NA Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000045994 1 1 2 80 1 66959798 66959818 AGACCAGATTATAGAGCACCT 58 66959859 66969434 AAATCTGACAGAGTCTGTGG 57 NA Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000072122 2 1 2 80 1 66959785 66969360 ATTTAATGCCGAAAGACGGT 58 66969402 66969421 TCTGTGGAATGCCATTTGAG 59 NA Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000072122 3 1 2 80 1 66959784 66969359 CATTTAATGCCGAAAGACGG 58 66969402 66969420 CTGTGGAATGCCATTTGAG 57 NA Rattus norvegicus 81 Tlr2 ENSRNOG00000009822 ENSRNOT00000013025 2 1 1 82 2 182843264 182846025 AGGTCTCCAGGTCAAATCTC 59 182843201 182843219 CCCTTGAGAGGCCTATCAC 59 NA InUTR Rattus norvegicus 81 Fndc4 ENSRNOG00000051056 ENSRNOT00000076105 3 1 1 67 6 26387993 26388011 TGAACAGAGTCCTCAGGGA 60 26388263 26388282 CAATGGTGTTGATGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910567 ENSRNOG00000050494 ENSRNOT00000072617 2 1 1 80 2 150344376 150344396 CCTGACAACATTGAAGAACCT 59 150344438 150348081 AAGACACAGAGCCGTAAGG 59 NA Rattus norvegicus 81 Slc10a1 ENSRNOG00000005794 ENSRNOT00000007825 3 1 1 80 6 104621736 104623814 CTACATCCTTAAGGGAGGCA 59 104621675 104621693 TTGCCCACATTGATGACAG 59 NA Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 2 2 2 122 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079890 111079909 AGAAAGACATCGGTATCCGG 59 NA Rattus norvegicus 81 Olr130 ENSRNOG00000050164 ENSRNOT00000046616 3 1 1 60 1 169039866 169039887 TCTTTCCTCCATTTATGAACCC 58 169039827 169039846 CTCCTCTGAATCTGCTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361811 ENSRNOG00000032803 ENSRNOT00000047936 1 1 1 60 X 10430973 10430994 TACATGCGAATCTACAAGAAGG 58 10431015 10431033 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 1 2 2 88 17 39511104 39511882 CAGATACATGTAGAGCTCTACCA 59 39512725 39512747 GCAGTCTTGTCTTTCCTAATCAC 60 NA Rattus norvegicus 81 Rasgrp1 ENSRNOG00000005404 ENSRNOT00000007687 1 1 1 80 3 108990565 108991218 ATGGACAAAGATAGGGAGGG 59 108990504 108990523 CTTGGAATAGATGGAGCTGG 58 NA Rattus norvegicus 81 Rasgrp1 ENSRNOG00000005404 ENSRNOT00000007687 3 1 1 80 3 108988778 108989418 TATCGCTGTAAAGACTGTGG 58 108988717 108988735 CTTGGATCGTTTCTTGCAC 57 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000054334 ENSRNOT00000091756 2 1 1 82 11 60060471 60060951 GACCACAGATACTGGTTGGA 59 60060996 60061014 AGCTATGACCTTCTCTGGC 59 NA Rattus norvegicus 81 Cnih2 ENSRNOG00000020247 ENSRNOT00000027421 2 1 1 80 1 220479846 220479864 AGCATTCTGCTACATGCTC 58 220476361 220479804 TCATCAAAGGCTATGATGTGC 59 NA Rattus norvegicus 81 Dusp12 ENSRNOG00000003100 ENSRNOT00000004179 2 1 1 80 13 89264323 89264690 CCAGAGGCTAAGATGAATGAG 58 89264263 89264281 ACTGGAGGTATGGACTTCG 59 NA Rattus norvegicus 81 Usp29 ENSRNOG00000015956 ENSRNOT00000055721 1 1 1 80 1 69995419 70003527 AGTAGAAACCTGGGACTTGG 59 69995358 69995376 GAGGTTGAGTCCTCGTCAC 60 NA InUTR Rattus norvegicus 81 Vps18 ENSRNOG00000013689 ENSRNOT00000018717 2 1 1 82 3 111097630 111097648 ATGAGGACTCATTGTCCCG 59 111097691 111098769 GGCATTTACATACCCAGAATGG 60 NA Rattus norvegicus 81 Rn60_1_1855.1 ENSRNOG00000051128 ENSRNOT00000076828 2 1 1 82 1 178475075 178475470 GAAGAAGAGACGACCAAGAG 58 178475012 178475031 AATGCACCATTAGGACACAG 58 NA Rattus norvegicus 81 Dcdc2 ENSRNOG00000017511 ENSRNOT00000068021 2 1 1 80 17 41880785 41959692 ATTCCAGACAACGATGAAGG 58 41880724 41880743 ATCTTCCTGAACTTCTGCTG 58 NA Rattus norvegicus 81 Olr750 ENSRNOG00000004920 ENSRNOT00000006522 1 1 1 60 3 102484115 102484134 GCCACTCCATTACTCTAGCA 59 102484074 102484092 TGATGCCACCACTAATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53inp1 ENSRNOG00000007964 ENSRNOT00000010591 1 1 1 80 5 24411084 24411619 CTTGTTGACTTCATAGATACCTGC 60 24411656 24411676 TGAGGACTCTTCACCAATGTC 60 NA Rattus norvegicus 81 Map3k15 ENSRNOG00000025290 ENSRNOT00000043666 2 1 1 80 X 37651721 37651740 AGATGCTGAACAATGGAGTG 58 37649722 37651682 GGTCATACTCATACTCTAAGGTG 58 NA Rattus norvegicus 81 RGD1563941 ENSRNOG00000005918 ENSRNOT00000007754 1 1 1 60 8 52829480 52829502 CAAACTCGACCTCTTAAGAAGTG 60 52829522 52829540 GAGAGCAGATCCTAACGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc4 ENSRNOG00000008994 ENSRNOT00000011937 1 1 1 80 4 145336393 145336411 TGCCATAAATTCATGCGCT 59 145336455 145337516 GTCATAACCCTCCACAGGT 59 NA Rattus norvegicus 81 Gcdh ENSRNOG00000003307 ENSRNOT00000004570 3 1 1 80 19 26002952 26002971 CATGCTCACTGAGATCACAC 59 26002555 26002909 TCTGGAGTAGCCTTGTCCT 60 NA Rattus norvegicus 81 Zp1 ENSRNOG00000020907 ENSRNOT00000028396 2 1 1 81 1 226966844 226966959 GATTCTGAGATAGCAAGGCA 58 226966782 226966800 CTGGAGAGCTCACAATGTC 58 NA Rattus norvegicus 81 Zp1 ENSRNOG00000020907 ENSRNOT00000028396 3 1 1 81 1 226970207 226970600 TTACTATGGCAACACAGTCAC 58 226970146 226970164 TGTCAAGGCTGTTTCTTGC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 3 2 2 80 3 110483716 110484302 CTACTGAGGTGGATATCTGGTC 59 110484343 110484361 GGGAGTCGCTGAAGTAAGG 60 NA Rattus norvegicus 81 Lrp5 ENSRNOG00000015911 ENSRNOT00000022213 2 1 1 80 1 218865822 218865840 CACCTCCCGAAAGATCCTG 60 218864128 218865778 TACATGAGGCCCATCACAG 59 NA Rattus norvegicus 81 Atoh1 ENSRNOG00000006383 ENSRNOT00000008358 2 1 1 60 4 95498759 95498777 CAACGACAAGAAGCTGTCC 59 95498801 95498819 GGCGTTGATGTAGATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knop1 ENSRNOG00000046147 ENSRNOT00000073003 3 1 1 81 1 188571855 188571873 AATTCGAAGCTGACTTCCG 58 188569630 188571813 TGACCATTACTGGTCTATTAGC 58 NA Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 3 2 2 81 4 145378503 145383391 CATCGTGAAGGAAATGCTCC 59 145378441 145378459 CATGTAACTGGAGGTGCCA 60 NA Rattus norvegicus 81 Ints9 ENSRNOG00000013459 ENSRNOT00000018071 3 1 1 80 15 48400463 48403884 CACCGTCATATTTACAGAACCC 59 48403925 48403943 TAGATGCACTTCATGGCCA 59 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000064511 2 1 2 80 1 201906209 201906229 TTTCTACTGACAGGAGTTGTG 58 201905321 201906167 ACAGAGTTGATCGTCTCCA 58 NA Rattus norvegicus 81 Cst6 ENSRNOG00000020455 ENSRNOT00000027727 2 1 1 80 1 220727479 220727844 TGCAACAGGAGAAACTTCG 58 220727417 220727437 AGTCATGCTTTAGAAGCTGAG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 2 2 2 80 10 18084112 18084786 AAGGTCAAAGGGTCAAGAG 57 18084050 18084070 ATGTCTTCTACAGAGCTAGGT 58 NA Rattus norvegicus 81 RGD1308742 ENSRNOG00000022033 ENSRNOT00000035829 2 1 1 81 3 14285194 14285214 TCGTCTATGACAACAGCTCTC 60 14280325 14285151 TAGACGGCAACCTTCACAG 60 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975,ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 2 4 5 80 17 39416231 39416252 TCTCTAAAGCTAAGGATCTGGA 58 39416293 39417253 TAGGGAAGACCTTGGTGAG 58 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501,ENSRNOT00000078838 2 2 2 80 14 84719263 84719283 CATACATTCTATCCGGAGGAG 57 84713610 84719221 GCAGAAAGCCAATTTCCAG 58 NA Rattus norvegicus 81 AABR07020786.1 ENSRNOG00000039928 ENSRNOT00000049137 1 1 1 86 13 40300458 40300476 CTACAGCAGATCCTCGGAC 59 40300527 40300545 TAACTTACCACTTGGTCGC 58 NA DesignNoJunction Rattus norvegicus 81 Mrpl17 ENSRNOG00000019497 ENSRNOT00000050562 2 1 1 80 1 170653438 170653458 CTCATCGACTATGGAAAGCTG 59 170653130 170653396 CAAGTCCTTCTCAGTGAGC 58 NA Rattus norvegicus 81 Clstn3 ENSRNOG00000011156 ENSRNOT00000015570 1 1 1 80 4 157065119 157065137 AATGGTCTCATCCACCCAC 59 157064502 157065081 CTTCTCTTTGTTCTTCTCTTCAGAC 60 NA Rattus norvegicus 81 Ramp3 ENSRNOG00000053766 ENSRNOT00000086468 2 1 1 81 14 86937070 86937088 CCTTTGCCGAAATGATGCA 60 86937131 86938735 GTGAAGCTTTCGTAGTACACG 59 NA Rattus norvegicus 81 Msln ENSRNOG00000019445 ENSRNOT00000026395 2 1 1 80 10 15123031 15123419 CTGCTCTTCCTCAATCCAG 58 15122969 15122990 TACATTGGCTTTAGAGATGAGG 58 NA Rattus norvegicus 81 Fbxo48 ENSRNOG00000023026 ENSRNOT00000032965 1 1 1 80 14 100135591 100135609 TGCTTGAGCATAAGAGCTG 58 100135652 100136113 CAGGAGTATTACCCTCCAGG 59 NA Rattus norvegicus 81 Sirt5 ENSRNOG00000017866 ENSRNOT00000024066 3 1 1 92 17 23999410 24003586 CTGGAAATCCACGGAACCT 60 24003640 24003660 CAATAAGGCTGGACAAATCGG 60 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 2 2 2 80 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882994 39883014 AGAACTAGAAGCCTCAGTGAG 59 NA Rattus norvegicus 81 LOC679565 ENSRNOG00000022709 ENSRNOT00000029408 2 1 1 60 5 846826 846845 AACTGGAAACACTAACTGCT 57 846785 846804 GAGGGCTGATTACTTGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptlc3 ENSRNOG00000004443 ENSRNOT00000005920 2 1 1 80 3 132653932 132678701 GAAACTTTGGAGGTGTGCAG 60 132678742 132678762 ATCCCATCTCTATAAGTCGCC 59 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 3 2 2 80 11 58834241 58844105 AGGTCACTGTGAACTATCCA 58 58834180 58834198 ATTTGAGGGAAGCTTGTCG 58 NA Rattus norvegicus 81 AABR07069587.1 ENSRNOG00000050165 ENSRNOT00000071210 1 1 1 60 8 32604452 32604473 TACATGCGAATCTACAAGAAGG 58 32604494 32604512 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata24 ENSRNOG00000019976 ENSRNOT00000040091 2 1 1 80 18 28454535 28454553 TCTCGCCTTCGATCAACTG 60 28453331 28454493 TGGAGAACCATCACATTCCTC 60 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234,ENSRNOT00000065211 2 2 2 102 2 187282129 187282148 GAAACTGGTCATCGATGAGC 59 187282448 187282467 CTCCTTGGGACGTTTAGGG 60 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076777 2 1 4 91 6 52460157 52531802 ACTGCTCCGACAATATGCA 60 52531857 52531875 CTTGACCACCTGATTGCAG 59 NA Rattus norvegicus 81 Ninj1 ENSRNOG00000016587 ENSRNOT00000022341 2 1 1 81 17 15868701 15868719 TGGTGCTCATCTCCATCTC 59 15867549 15868659 TTGTTGAGGTCATACTTGACCA 60 NA Rattus norvegicus 81 LOC498122 ENSRNOG00000048861 ENSRNOT00000071453 2 1 1 156 11 86303220 86303239 ACTACTATGTCCATGGCGAG 59 86300358 86300376 ATGAGGGTGTGCTTCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497,ENSRNOT00000030259 1 2 2 135 1 69738151 69739294 CTGACTCCAGGTTGTTGGA 59 69738034 69738052 TGCTTAGCAAGGGTGTCTC 60 NA InUTR Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000076508,ENSRNOT00000041271 1 2 3 60 5 48290118 48290137 AAGAATACCTCCATGAGCCC 59 48290160 48290178 ACGACCTTCTCTGACTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptch2 ENSRNOG00000057616 ENSRNOT00000087353 2 1 1 113 5 135981922 135981940 GTACTTCTTCGTGGTGCTG 59 135982016 135982342 TATATCTGGACCACCTGTGG 58 NA Rattus norvegicus 81 Mid1ip1 ENSRNOG00000003228 ENSRNOT00000004305 3 1 1 97 X 13116255 13116553 GCAGTGCAAGAGATCAAGG 59 13116176 13116194 TTCTGTCTCAGTTCAGCCC 59 NA InUTR Rattus norvegicus 81 RGD1563958 ENSRNOG00000028869 ENSRNOT00000048460 1 1 1 60 8 32431836 32431854 TGCGGAGAAGATTCAAGGG 60 32431794 32431813 TTCTTGTTACTCCCGTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563958 ENSRNOG00000028869 ENSRNOT00000048460 3 1 1 60 8 32431837 32431855 GTGCGGAGAAGATTCAAGG 59 32431795 32431813 TCTTGTTACTCCCGTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fchsd1 ENSRNOG00000039415 ENSRNOT00000026381 2 1 1 80 18 31102081 31102241 CTGATGAATGGGTTAAGGCTC 59 31102021 31102039 AGAGATCCGGGAAGTTGAG 59 NA Rattus norvegicus 81 U2af1 ENSRNOG00000045860 ENSRNOT00000074081 1 1 1 80 20 10398295 10398397 GAGTTCTTTGAGGAAGTCTTCAC 59 10398237 10398255 TCCTAGGTTGTCACAGACG 59 NA Rattus norvegicus 81 Psme2 ENSRNOG00000019246 ENSRNOT00000026279 2 1 1 80 15 34268635 34268749 GGATGATGAGATGGAAACCG 59 34268487 34268505 GCCAGAAGCTTCTCATTCC 59 NA Rattus norvegicus 81 Rit1 ENSRNOG00000020232 ENSRNOT00000027455 2 1 1 80 2 188095920 188095939 CCTATAAGATCCGGATCCGC 60 188095981 188096212 CTGTAAACTCTGCCTGTCCT 60 NA Rattus norvegicus 81 Gsx1 ENSRNOG00000000952 ENSRNOT00000001260 2 1 1 125 12 9606762 9606780 AGTTTCACTGCATCTCCGT 59 9606145 9606163 AGAGGTACATGTTGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Ggta1l1 ENSRNOG00000042373 ENSRNOT00000060013 1 1 1 82 3 14570040 14571574 TACTCCAGAACAAAGGATCACC 60 14563948 14563966 AACCAAGACTCGAGCTGAG 59 NA Rattus norvegicus 81 Ptms ENSRNOG00000060098 ENSRNOT00000081802 3 1 1 82 4 157436349 157436367 AGAATGGAGCTGAGGAGGA 60 157436135 157436305 TTCCTCCTCATCTTCTTCGTC 59 NA Rattus norvegicus 81 S100vp ENSRNOG00000028310 ENSRNOT00000023564 2 1 1 82 2 190629350 190631570 TTCTAAAGGCAATGGATGAAGC 59 190631611 190631631 GTCCCAAATCTCATCAAAGGG 59 NA Rattus norvegicus 81 Daxx ENSRNOG00000000477 ENSRNOT00000000559 3 1 1 80 20 5482604 5482623 CACCGAAGATGAAGATGAGG 58 5482383 5482564 TCTTCATTATCTCCTTCCTCCT 58 NA Rattus norvegicus 81 Rnf169 ENSRNOG00000026408 ENSRNOT00000029629 3 1 1 80 1 164947111 164977178 GGAGCCAGAGTTTATATTCCG 58 164947051 164947071 TTTCTCAGGCATCCATATTCC 58 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000049574 2 1 2 80 1 227763116 227765893 AATCTTTGGTAGATGGCAGC 58 227765933 227765954 TGACAGAGATGATAATGATGCC 58 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 3 2 2 80 18 28381371 28381389 AAGGCACTTTGGTTTCAGG 59 28381432 28382545 GTTAGGAATCCTCAGCACCA 60 NA Rattus norvegicus 81 Lin9 ENSRNOG00000023304 ENSRNOT00000074148 2 1 1 80 13 98947415 98948762 CAAAGTTACAGCACGATTACGT 60 98948799 98948821 GTAGCATTAAGAGTATCCACAGC 59 NA Rattus norvegicus 81 Rn60_5_0525.3 ENSRNOG00000061839 ENSRNOT00000080857 3 1 1 80 5 47849778 47849915 GGATTTAGCTCAGGTTGACC 58 47849956 47849976 CATCTTCCTCAGATCTTCCTG 58 NA Rattus norvegicus 81 Pkdcc ENSRNOG00000004205 ENSRNOT00000005664 2 1 1 83 6 6432017 6432881 GATTCCGAATCTGCCTCAG 58 6432928 6432946 GGAAGTCAAGCAGAGTGAC 58 NA Rattus norvegicus 81 Rsph1 ENSRNOG00000057862 ENSRNOT00000084726 3 1 1 101 20 10001712 10003552 CACAGATGTGGAAAGAGGTG 59 10001630 10001648 GTCCACAAGGCCAATTCTG 59 NA Rattus norvegicus 81 Pgam2 ENSRNOG00000013532 ENSRNOT00000018227 3 1 1 80 14 86045172 86046419 ATCTGGAAGGGATGTCAGAC 59 86045111 86045129 CCTGGTTCAGCTCATACAC 58 NA Rattus norvegicus 81 Mir325 ENSRNOG00000035627 ENSRNOT00000053750 2 1 1 60 X 76334324 76334343 GCTCAGTAAGTGTTTGTGAC 57 76334283 76334303 ACAGTGCTTGATTGATAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fjx1 ENSRNOG00000005347 ENSRNOT00000007077 3 1 1 60 3 92289886 92289904 CTTCGATTACCTGACAGCC 58 92289844 92289863 CCACTGTAAGCTGAAGAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1431 ENSRNOG00000031194 ENSRNOT00000046817 1 1 1 60 10 44229425 44229444 CCTTCCTCCTGATTGTTCTC 58 44229464 44229485 GAGTCTATTCTTATCACAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam167a ENSRNOG00000011316 ENSRNOT00000015055 3 1 1 81 15 46629609 46640685 CAGAAAGGAACTGGCAGAG 58 46640730 46640748 TTTGTTGATGTCTCCTCGG 58 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 3 2 2 80 15 28548761 28549194 ACTTGTGTTATCAGGAGGAGC 60 28549236 28549254 TCTCCATCGTCTCTTCGTG 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995,ENSRNOT00000068322 2 2 2 82 1 83966821 83966839 ACGAGTACCATTGAGGAGC 59 83966885 83967149 TCAAATGGAGCTCCCATGG 60 NA Rattus norvegicus 81 Rps25 ENSRNOG00000027503 ENSRNOT00000029546 3 1 1 72 8 48728271 48729500 CTTAGTAAAGGACTTATCAAGCTGG 59 48729529 48729548 CACCCTTTGTGTTTCTGGTG 60 NA DesignRelaxed Rattus norvegicus 81 Orc2 ENSRNOG00000012558 ENSRNOT00000051843 2 1 1 80 9 65353276 65353296 TTAACAGTGATCTCACACTCC 58 65351744 65353234 CATCAGTTCCCTTCTTCGT 57 NA Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000075056 1 1 2 87 17 39725095 39725115 ATGAAAGACAGGATACTTCCC 57 39724815 39725049 GAGACAGTTTGATTTCATGGAC 58 NA Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000065685 3 1 2 81 17 39724825 39724934 AGCATTAATAGATCTGTCCAGC 58 39724765 39724786 ATGTTTAAGGATGAGTGTCCAG 58 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144,ENSRNOT00000077185 1 2 2 80 10 39453966 39457605 GATTGCTAAGCCCAAACTCG 60 39457645 39457666 GAAACTCTGTAGCTAGCAACAG 59 NA Rattus norvegicus 81 AABR07031963.1 ENSRNOG00000052952 ENSRNOT00000091759 2 1 1 80 18 40873122 40873398 ATCATCCTGAGTGAGCCAC 59 40873441 40873460 ACATCCATACCAGGTTCCTG 59 NA Rattus norvegicus 81 Tmem136 ENSRNOG00000021793 ENSRNOT00000038647 1 1 1 63 8 47401205 47401223 CTTCATCGATGGTCCTTGG 58 47399766 47399784 GTGAACTTGGAGAGGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Scgn ENSRNOG00000016628 ENSRNOT00000022329 1 1 1 80 17 43373430 43374181 GAGCTTTCTAACTTTCTCCGA 58 43374221 43374241 GCTAGTATACTCTTCCAGCTC 57 NA Rattus norvegicus 81 Pak4 ENSRNOG00000019883 ENSRNOT00000026966 2 1 1 92 1 85197879 85197897 CTACCTGGTAGGCGATGAG 59 85197952 85198254 TCCTCATTCATCCTGGTGTG 60 NA Rattus norvegicus 81 Olr167 ENSRNOG00000049739 ENSRNOT00000072462 2 1 1 60 1 169801897 169801915 GCAGACCACTCCAATACAC 58 169801855 169801873 AACACAGTTGCTTTGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 2 1 2 80 11 60532615 60536080 GTCATCCATGTGACAGAAAGG 59 60531107 60531127 ATTGGTAGCATTTGGGATGTC 59 NA Rattus norvegicus 81 Coro2b ENSRNOG00000015257 ENSRNOT00000020951 3 1 1 80 8 67387623 67388595 GACTACAAGGTCCTCATCTG 57 67387562 67387580 GCAGAGGATCACATCTGTG 58 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327,ENSRNOT00000086899 2 2 2 80 16 54853147 54855413 AGTCCCTAGAAGAAAGGCTG 59 54855455 54855474 TGGGTTCACTTTGCTTACTC 58 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327,ENSRNOT00000086899 3 2 2 80 16 54804139 54804159 TGAAGAATACAAGCGAATGGG 59 54804198 54814928 GAGTCACAAACTCTGTAGTCTC 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344,ENSRNOT00000019862 1 2 2 80 17 15359743 15359761 CTGAAGAGCGTCATTACCA 57 15358876 15359701 GTTCTGTAATTCTGTTCCACC 57 NA Rattus norvegicus 81 Alpp ENSRNOG00000033672 ENSRNOT00000025978 1 1 1 80 9 94191585 94191792 CACCGACATTGATGTGATCC 59 94191524 94191543 TCAGTCGGATATTCCTGGTC 59 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242,ENSRNOT00000007069 1 2 2 80 3 51780931 51782678 TTGGGAATTTGGTCTTCACTG 59 51782714 51782738 GGAAGTAATAATATGGATCCATGGC 60 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 2 3 3 80 1 140853798 140853816 TAAGGCTGTACCCTGTCTC 58 140848634 140853754 CAGAGCATCCATGCAACTC 59 NA Rattus norvegicus 81 Rtf1 ENSRNOG00000005183 ENSRNOT00000056392 3 1 1 80 3 111530953 111530973 CTAAATGAGCTAGAAGAGCGG 58 111531013 111531191 CTGGTTGATGTAGCTGATAGC 59 NA Rattus norvegicus 81 Tldc1 ENSRNOG00000016224 ENSRNOT00000021743 2 1 1 80 19 52409021 52410348 TCAGAGAAAGATCAGGGCAC 60 52408960 52408978 TCCACTGATCTCCAACAGG 59 NA Rattus norvegicus 81 Rn60_20_0013.2 ENSRNOG00000053091 ENSRNOT00000079038 3 1 1 60 20 1577793 1577814 AACCTCCATCTACTTCTCACTC 59 1577754 1577775 ACCAAGGTATACATAACAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0009.5 ENSRNOG00000050438 ENSRNOT00000066245 2 1 1 60 20 1601214 1601233 GGTAACTCCCACTCTGAACC 60 1601173 1601197 GGAACTCTTAACATCCCTATTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab12 ENSRNOG00000026176 ENSRNOT00000041464 2 1 1 80 4 147726820 147729768 CCAGGGAGTATCACAATTTGTC 59 147726761 147726780 GTAGGGATGAGATAGCCTGC 60 NA Rattus norvegicus 81 Efcab12 ENSRNOG00000026176 ENSRNOT00000041464 3 1 1 80 4 147731797 147731816 GTATTTAGCAAGGCGGATCG 59 147729908 147731755 AACTCCAATTGCCTTCACAG 59 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161,ENSRNOT00000056818 2 2 2 80 8 96053284 96055138 CAGACTGCAGATCCCTGAC 60 96053222 96053243 CAGCTAGGAAATCCAAAGAAGG 59 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 2 1 1 77 10 40195381 40198442 TAAGAGGGCATTGGAAGCA 59 40195322 40195340 TTCTCTGGAGATGTCTCGT 57 NA DesignNoJunction Rattus norvegicus 81 Map2k6 ENSRNOG00000004437 ENSRNOT00000006217 2 1 1 80 10 98804700 98804720 ACTTCGTTGACTTTACCTCAC 58 98816479 98822408 ATGGATGTTGCATAAGCTCTG 59 NA Rattus norvegicus 81 Eif2ak4 ENSRNOG00000006027 ENSRNOT00000009222 3 1 1 80 3 110226695 110230048 CTTGTCATCTAATAGTCTGTGTCG 59 110230087 110230105 TTTATGGTCGGCGTTAGGT 59 NA Rattus norvegicus 81 Fhl2 ENSRNOG00000016866 ENSRNOT00000023014 3 1 1 107 9 49949994 49950013 TTCTAAAGGAGGAGAACCCG 59 49938454 49949924 AGGACAAGTCCTTGCAGTC 60 NA Rattus norvegicus 81 Cd70 ENSRNOG00000051015 ENSRNOT00000070806 3 1 1 115 9 9843618 9845264 GCTGAATCTCACAGACCCT 59 9845343 9845361 GATGGATACGCAGATTGCC 59 NA Rattus norvegicus 81 Rn60_20_0009.6 ENSRNOG00000051451 ENSRNOT00000089078 3 1 1 60 20 1622851 1622873 GTCATCTTAGATCCAAGACTCCA 60 1622813 1622831 GACATGCTAGGTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf6 ENSRNOG00000017277 ENSRNOT00000023262 1 1 1 80 1 191003875 191007422 TCTTCAAGTTGGTGTGGTG 58 191003813 191003831 GTCTGAGACGTGTAGTCCA 59 NA Rattus norvegicus 81 Slc13a3 ENSRNOG00000019118 ENSRNOT00000025843 3 1 1 80 3 162100007 162104417 GGTTTGACTTCAAAGCTCCC 60 162099946 162099964 TATTCCAGGGCACTGTCTC 59 NA Rattus norvegicus 81 Olr1356 ENSRNOG00000039773 ENSRNOT00000061019 1 1 1 60 10 11942157 11942176 CCTTCAATACATGCGTCTCC 59 11942116 11942138 TAGATAGCAGAGCCATAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc15a1 ENSRNOG00000011598 ENSRNOT00000015890 3 1 1 80 15 106813234 106815261 CCCAAATGTCTCAGACAGAC 58 106813173 106813191 GAGATCCGGGAGAAGACAC 59 NA Rattus norvegicus 81 Maml1 ENSRNOG00000003268 ENSRNOT00000004361 1 1 1 81 10 35775688 35775709 CTCCTTGTTTCTGATGAAACCA 59 35773498 35775646 GGAAGGATTCTGCTCCTGG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 3 2 2 80 4 61427660 61430236 CAACCTAAACCTATCCCACTG 58 61430276 61430296 GAAAGATTCAACTTCTGCAGG 58 NA Rattus norvegicus 81 Tmprss7 ENSRNOG00000002145 ENSRNOT00000045521 3 1 1 80 11 60111997 60113775 GTATTAAATGCTGGGCTCCG 59 60114578 60114599 ATCTGCATAGAAGTACTGGGAG 59 NA Rattus norvegicus 81 Emilin1 ENSRNOG00000008246 ENSRNOT00000010932 2 1 1 91 6 26821894 26822319 CAGAGACAGGTGTATTCACTG 58 26821823 26821841 TACTGCCTCCACTTTCTCG 59 NA Rattus norvegicus 81 LOC102553763 ENSRNOG00000029490 ENSRNOT00000024639 3 1 1 121 1 198794434 198794727 TCTCAAAGGCAACACAAGTG 59 198794332 198794350 TTTGTGGCTCAAATCCTGG 58 NA Rattus norvegicus 81 Paf1 ENSRNOG00000019746 ENSRNOT00000026778 2 1 1 80 1 85366123 85366415 GACCAGAACAGGTTTGTTCAG 60 85366063 85366082 CAGATCTGGTTCAGTCAGGA 59 NA Rattus norvegicus 81 Pex11g ENSRNOG00000028100 ENSRNOT00000037564 1 1 1 102 12 2003568 2003586 GATGCTAAGGTCCTCCAGG 59 2001973 2003502 TTGTCCACAGGGACTTGAC 60 NA Rattus norvegicus 81 Rn60_20_0038.3 ENSRNOG00000058119 ENSRNOT00000083355 3 1 1 60 20 1695230 1695248 ATTTGTGCTGATGTCCACC 59 1695188 1695206 TGAGTGAGAGCTGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss12 ENSRNOG00000015353 ENSRNOT00000021116 1 1 1 80 2 227695396 227697640 AGCTTGGCTATAAGGGTCC 59 227697684 227697702 CATTGTCCATGTGGATGGG 59 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162,ENSRNOT00000084505 1 2 2 80 15 39809385 39809403 GATTGGTACACGGTGTCCT 59 39809445 39819860 GCTTCATAGCCTTTGAGAAGC 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000004252 ENSRNOT00000005786 2 1 1 80 6 10222509 10224011 GTCGTTCTCATTTACGATCCC 59 10224050 10224071 CATCAGTTTAGGAGTCAGTCTG 58 NA Rattus norvegicus 81 Snx18 ENSRNOG00000010971 ENSRNOT00000066764 3 1 1 82 2 45479090 45479108 GTCATGGACCTGTTAGCAC 58 45457403 45479045 TTGGTAAGAGCTCCTTTCTG 57 NA Rattus norvegicus 81 Inip ENSRNOG00000017047 ENSRNOT00000022987 2 1 1 136 5 77029486 77029504 GCAGCAAATCCTTCAGGAC 59 77021041 77022036 GACAGGGAGATGCTAGCTC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162,ENSRNOT00000091236 3 3 3 80 10 38891765 38892619 CTAGATAGCAAGGTGAACATAATCC 59 38892655 38892675 GATCTTGAACTTGTGGAGCTC 59 NA Rattus norvegicus 81 LOC690806 ENSRNOG00000043288 ENSRNOT00000067898 3 1 1 60 17 21339198 21339216 AATTCAAGTTTCTGCGGGA 58 21339156 21339176 TGCTCATTATCTCCTTCCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1095 ENSRNOG00000050274 ENSRNOT00000051928 3 1 1 60 7 15622048 15622069 CTCTACCTTCCCTCATCTTCAG 60 15622089 15622108 GAAGAGGTACATGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab12 ENSRNOG00000019295 ENSRNOT00000026177 3 1 1 80 9 114685853 114685873 GAGATCTTTCTGCTCGTGG 58 114684114 114684135 GAGGATGCTATTGGATAACTCG 59 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 2 2 2 80 5 24454643 24457631 ATTTACTTTGCCACCAACCA 58 24454582 24454602 ATTGAAGAAGTCAGAGCACAC 59 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000092196 1 1 2 112 5 107853559 107853577 CTAATGGTGCTGCACAAGG 59 107849050 107853486 ATTCTTCACCTCGCAATATCAC 59 NA InUTR Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 1 4 5 80 4 22397492 22397513 CCATCATGAATCAGGAGATAGG 58 22396746 22397451 TGGAGACGTCATCTGTGAG 59 NA Rattus norvegicus 81 Zfp192 ENSRNOG00000053635 ENSRNOT00000088280 2 1 1 80 17 45088373 45089259 AAATATGTTCTCCCTGGATGG 58 45089298 45089319 TGGATTCTGGGAGATATTACCT 58 NA Rattus norvegicus 81 Rabep2 ENSRNOG00000018462 ENSRNOT00000025043 1 1 1 80 1 197854043 197854170 GCGAGAAGAGACAGATGTG 58 197854306 197854325 TTGTGATGCTCTTGTTGGAC 59 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534,ENSRNOT00000056251,ENSRNOT00000056250 1 3 3 80 9 121842953 121842971 ATCCCTCGAGAGTCTTTGC 59 121843014 121843195 TCCATTCCATGTTCCCATCC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000083651,ENSRNOT00000045099,ENSRNOT00000086105,ENSRNOT00000081321 3 5 5 80 16 19746916 19746937 CATCGAGAGCTTGTTCATTGAG 60 19746978 19747115 ATCTTCCCGTTAGGCACAG 60 NA Rattus norvegicus 81 LOC100911068 ENSRNOG00000049289 ENSRNOT00000043344 3 1 1 83 8 39083905 39083923 TCAGGACAGTGTACTCACC 58 39083712 39083858 GATACACTGTTCGTGGGTG 58 NA Rattus norvegicus 81 Olr1689 ENSRNOG00000046312 ENSRNOT00000072222 1 1 1 60 20 1224982 1225006 CATTATACACAGCAAGTACACTCTC 60 1224946 1224967 AACTGGTGAATTACTTTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000077072 2 1 2 176 15 51757117 51757557 CTCAGATGGCTACAGCCTC 60 51758515 51758533 TTTCCCAAGTAGGTCACGG 59 NA InUTR Rattus norvegicus 81 Trpm2 ENSRNOG00000001216 ENSRNOT00000001631 1 1 1 80 20 11455744 11457784 TCAAACTCAACGTGCAAGG 59 11457828 11457846 CTGGGTCAATGGTGAAGGT 60 NA Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000081519 1 1 2 86 10 102193555 102193573 GATGACAACCACCCTCCTC 60 102183490 102193505 TACAGGCACTTCCTCTGTG 59 NA Rattus norvegicus 81 Braf ENSRNOG00000010957 ENSRNOT00000014604 2 1 1 80 4 67401463 67401485 CCATGAAGAGATTAATGGCAGAG 59 67400089 67401425 CAATAGAGGCGAGAATTTGGG 59 NA Rattus norvegicus 81 Mcm6 ENSRNOG00000003703 ENSRNOT00000004969 3 1 1 80 13 45048283 45048301 CACTGTGAGACAGCTTGAG 58 45046566 45048239 TTAGGCTGGACCTCATCAC 59 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089,ENSRNOT00000042713 3 2 2 84 11 38677393 38677413 AAAGAAGGAAATGTCAGCCTG 59 38675164 38677349 ACACATCTCCATGTTTGTCTC 58 NA Rattus norvegicus 81 Smek3 ENSRNOG00000032858 ENSRNOT00000040923 1 1 1 70 X 57867538 57867557 CATCCATGTTTCAAGCACAG 58 57867987 57868007 AGGTCTGAACATACTCAACTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC685203 ENSRNOG00000038738 ENSRNOT00000059159 3 1 1 60 9 53440535 53440556 CATCCAATACTACAACATCCCA 58 53440574 53440595 TCAATCAATGGTGATGTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm1b ENSRNOG00000016519 ENSRNOT00000022244 2 1 1 80 17 18003841 18006890 ATAACTTTGGGATGAAGGTGAC 59 18003782 18003804 CTTTAAAGGACTTGTCATCCCAG 60 NA Rattus norvegicus 81 Itga11 ENSRNOG00000006723 ENSRNOT00000008971 2 1 1 80 8 67674498 67674517 AAGATTACTGTGCCCATTGC 59 67674560 67674744 TGTGTTGACCTGGTCTGTG 60 NA Rattus norvegicus 81 Aldh8a1 ENSRNOG00000014907 ENSRNOT00000020015 1 1 1 80 1 16914829 16914847 CGTATCGGATTGCACAGAG 59 16914891 16916112 ATCAAACCAGCAATTCCCA 58 NA Rattus norvegicus 81 Aldh8a1 ENSRNOG00000014907 ENSRNOT00000020015 2 1 1 80 1 16914829 16914847 CGTATCGGATTGCACAGAG 59 16914890 16916112 ATCAAACCAGCAATTCCCAC 59 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 2 2 2 80 3 5711845 5711863 GTCAAACAGCCTATCCCTG 58 5711906 5713771 ACAGTGTCATCCTCAATGAC 58 NA Rattus norvegicus 81 Cox19 ENSRNOG00000050052 ENSRNOT00000072509 2 1 1 93 12 17395722 17398250 TAGACCACTTCGGTGAGTG 59 17398305 17398325 GATTCATTTCTGCACAGAGCA 59 NA Rattus norvegicus 81 Cnpy4 ENSRNOG00000027175 ENSRNOT00000033288 3 1 1 80 12 19334192 19334295 CACTGAAACTGCTTGTCTCC 59 19334338 19334356 TCCTCTTCCTCTGTCTCCT 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770,ENSRNOT00000019309 3 3 3 80 1 193285503 193289236 ATCTGCTACAGATTGAACGTC 58 193285443 193285461 GGAAGCAGGCTATCAAACG 59 NA Rattus norvegicus 81 Pcdhgb8 ENSRNOG00000027220 ENSRNOT00000026967 2 1 1 64 18 30911846 30911864 CAGTGAGTGTCACTGAGGA 59 30911892 30912589 TGCTTGGTGGTTAGAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Prr30 ENSRNOG00000025726 ENSRNOT00000009916 2 1 1 86 6 26780464 26780482 CTGCTCAGACTGGAATGCT 60 26780614 26781076 CACAGTCTGTAGGACCAGTG 60 NA InUTR Rattus norvegicus 81 Ccdc182 ENSRNOG00000010446 ENSRNOT00000013882 1 1 1 60 10 75620555 75620574 AGGGCAAGAAGATGGTAGAG 59 75620595 75620615 CATGATTGAGACAGGGAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt4 ENSRNOG00000003114 ENSRNOT00000004289 3 1 1 83 11 64570070 64570090 TGACTTCAACCTCTACACCTG 60 64564924 64570025 CTGTAACGCAACCTGTAGC 59 NA Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 3 2 2 80 14 108906184 108911070 CAGGGTATTTGTAAAGATGAGCC 60 108911109 108911128 CAAGAGAAACCATGCACTGG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000084868 3 1 6 85 1 262001412 262001430 CCAGAACATCCCAGTCCAG 60 262001187 262001364 AGATGCTGTCTGTGTCTGTC 60 NA Rattus norvegicus 81 Brinp1 ENSRNOG00000005561 ENSRNOT00000007578 3 1 1 80 5 84986505 84986525 GCTATGACAATCTGGACTCTG 58 84961013 84986466 TTATCTGTAGACCTTGAAGGTG 57 NA Rattus norvegicus 81 Trim27 ENSRNOG00000055917 ENSRNOT00000077363 2 1 1 80 17 45615492 45616628 TATGGAGAAGATCCAAGAGTTGAG 60 45614667 45614685 CTGGGATAGGCTGTGTCTG 60 NA Rattus norvegicus 81 Serpinb11 ENSRNOG00000002583 ENSRNOT00000003495 2 1 1 92 13 27247563 27248901 AAATTCTTCTGAGTGCAGCC 59 27248955 27248974 GCAATGCTGAGGGAATTCTG 60 NA Rattus norvegicus 81 Cttnbp2nl ENSRNOG00000014479 ENSRNOT00000019680 1 1 1 80 2 207505635 207521832 AGCTTTAAAGGCCCAACAC 59 207505573 207505593 AGAGCCATTAGAGGATCACTG 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063,ENSRNOT00000080655 2 2 2 80 17 45256559 45256581 AGGATTCATCTCAGATGAACCTC 60 45256621 45261707 GCATGTTCTCATCCAGGGA 60 NA Rattus norvegicus 81 Mthfr ENSRNOG00000008553 ENSRNOT00000011384 2 1 1 80 5 164857833 164858720 CTATGTCTTCCAGAAGGCCT 59 164858762 164858781 TACGTCTTCAACACTTGCAG 59 NA Rattus norvegicus 81 Irx6 ENSRNOG00000011037 ENSRNOT00000014831 3 1 1 81 19 15731570 15731588 CAGAGTTACCCAGGGTACC 59 15730927 15731531 CCTTAAACTCATACTGAGGATTCAG 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275,ENSRNOT00000042432 3 2 2 82 20 10375057 10375408 AAGATGAGTATGGAGAAGGTGG 59 10374996 10375014 GAATCGAATCTGGCGTTGG 59 NA Rattus norvegicus 81 LOC685520 ENSRNOG00000030351 ENSRNOT00000045504 1 1 1 116 1 243108464 243108482 AGGAAGAAGAGGAAGACGA 57 243108129 243108147 GAGTGAGTTGTGTACAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Manf ENSRNOG00000014201 ENSRNOT00000019107 3 1 1 83 8 115624632 115624652 TATCCCTGTGGAGAAGATCTG 59 115623614 115624587 AGGTCAATCTGCTTGTCGT 59 NA Rattus norvegicus 81 Polr3e ENSRNOG00000016960 ENSRNOT00000040963 1 1 1 80 1 190859216 190862152 TCTCTTTCAGTATCCTGTTCGT 59 190862193 190862211 TGTTTGGGCTTGATCTTGG 58 NA Rattus norvegicus 81 LOC685964 ENSRNOG00000025934 ENSRNOT00000030426 1 1 1 80 4 122219068 122219366 GAAGTTTCCTTACAGGTTACCTC 59 122219406 122219424 AGTGATTTGCTCTTGGCCT 60 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 3 2 2 80 5 139047415 139047434 AAAGGCAGAGGAAGGTACTC 59 139047474 139062468 TTTGATTTGTACCCTCCTTCGA 60 NA Rattus norvegicus 81 Letm1 ENSRNOG00000016427 ENSRNOT00000022540 2 1 1 80 14 82262185 82262205 CAAGATGGTTGATGTGATCCC 59 82262245 82263098 ATCTCTTCTCCCTTCAAACCT 59 NA Rattus norvegicus 81 Rbm7 ENSRNOG00000005710 ENSRNOT00000007736 1 1 1 80 8 52827255 52827638 GTTTAGATCAGGAAGTAGTCACC 58 52827195 52827214 GACGTAGGGCTTAAGTTTCC 58 NA Rattus norvegicus 81 Slc35e1 ENSRNOG00000012287 ENSRNOT00000016399 3 1 1 81 16 19061512 19062291 TCTTCCTGTACAACAAGACCA 59 19062333 19062352 CTTAGGTCTGACGTGGAGAC 60 NA Rattus norvegicus 81 Btn2a2 ENSRNOG00000038877 ENSRNOT00000059403 2 1 1 80 17 43873610 43874544 TGATTCTCATTCCAGAACCCT 59 43874581 43874604 CCATTACTATAGGCAGAATGACAG 59 NA Rattus norvegicus 81 Serpinb1b ENSRNOG00000034229 ENSRNOT00000022681 2 1 1 80 17 32553015 32553222 TTCCGACTGAACAAGAAAGAC 59 32552955 32552974 ATCAGGAATGTAGCCAAAGG 58 NA Rattus norvegicus 81 Fbxl6 ENSRNOG00000025497 ENSRNOT00000035199 1 1 1 80 7 117604018 117604036 GTTCTCACAGCTCCAGAGG 60 117603687 117603975 CAGAACTTGCTAACCAGCTC 59 NA Rattus norvegicus 81 Mdh1 ENSRNOG00000008103 ENSRNOT00000011429 1 1 1 80 14 106379931 106379950 TAATCTCTGATGGCAACTCC 57 106379258 106379891 TCCAGGTCTTATTCTTGATCAC 58 NA Rattus norvegicus 81 Gpr82 ENSRNOG00000039762 ENSRNOT00000060992 2 1 1 60 X 9998896 9998916 TGTGCTTGTCGTAATCATTCC 59 9998856 9998874 GTCTTCTGTAGCCTCGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e1b ENSRNOG00000025480 ENSRNOT00000037527 3 1 1 82 17 10370730 10371379 TGTTCAAGGAAGGCATCCA 59 10370666 10370684 CTGTTTGGCAAGACTGAGC 60 NA Rattus norvegicus 81 Agl ENSRNOG00000016214 ENSRNOT00000055735 3 1 1 80 2 219821387 219821405 ATCACTGCCACTCACTTCC 60 219820375 219821343 ATCCAGCATGTACTCAGCC 60 NA Rattus norvegicus 81 Rn5s ENSRNOG00000050259 ENSRNOT00000073261 2 1 1 80 12 1510497 1510515 CTACAGCCATACCACCCTG 60 1510435 1510453 TCCACGTACTAAGCATGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700,ENSRNOT00000083438 2 2 2 80 11 53224710 53224732 CTGTGTCTGCATTCTTTAGTCTC 60 53224771 53228447 GAGTTGACCTCTGACCTCTG 60 NA Rattus norvegicus 81 Gipr ENSRNOG00000015860 ENSRNOT00000021456 1 1 1 86 1 80070600 80070618 TGGTAGTGATGGCCAATGG 60 80069951 80070550 AGCTTCTGGTCCTGAAAGG 59 NA Rattus norvegicus 81 Gdnf ENSRNOG00000012819 ENSRNOT00000041288 3 1 1 88 2 56892573 56892591 GTAAGACGCTTCTCGAAGC 59 56892643 56909749 GGGCATATTGGAGTCACTG 58 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 2 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696271 26696289 TCTTTGTCTCTGCTGTCCT 58 NA Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 3 2 2 80 9 65652330 65659472 GAACCAACTATGATGAAGAGGC 59 65659512 65659531 CTGTGCAATCACTGAAGGAC 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 1 2 2 80 20 13761045 13761357 TTTACTCAAAGGGCAGCAC 58 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Fabp2 ENSRNOG00000024947 ENSRNOT00000029871 1 1 1 80 2 227082966 227082985 ACGTGTAGACAATGGAAAGG 58 227083026 227083467 CCTTCATATGTGTAGGTCTGG 58 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521,ENSRNOT00000046456 1 2 2 80 6 137924570 137924594 AGACTATGTCTACTTTGAGAACTCC 60 137924631 137929179 CCGTTGGCTGTCTTATTGAG 59 NA Rattus norvegicus 81 Vom2r79 ENSRNOG00000047337 ENSRNOT00000041588 3 1 1 80 9 9253120 9253867 TATCCACAGCTGACCATTGG 60 9253059 9253078 TGTGGCCATCTGATACAGAG 59 NA Rattus norvegicus 81 Olr163 ENSRNOG00000046945 ENSRNOT00000075652 1 1 1 60 1 169698847 169698868 AATACACCATACCTACTGTGAC 57 169698889 169698907 CTTGACATTGCCACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr510 ENSRNOG00000052014 ENSRNOT00000090000 3 1 1 60 3 73879104 73879123 TTTCTGTGACATCCCTCCTC 59 73879063 73879081 AAGCTGATTGATGTGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnpll ENSRNOG00000006929 ENSRNOT00000009175 2 1 1 80 6 2713465 2717490 ATTTGGGAAGACGAGATAGAG 57 2713405 2713426 CATCATGTCTAAACGAAGAAGG 57 NA Rattus norvegicus 81 Vom1r61 ENSRNOG00000014181 ENSRNOT00000018981 3 1 1 60 1 75298705 75298726 CAGTAATTCTAAGTGGGCAAGG 59 75298741 75298765 GAAGGAGTCAAATGTCCATATAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink1 ENSRNOG00000013410 ENSRNOT00000017969 3 1 1 90 18 38183278 38185703 TTTAGCAGGTAACACTACAGC 58 38181741 38181760 CACAGGATCATAATCCCTGG 58 NA Rattus norvegicus 81 Pxdc1 ENSRNOG00000017093 ENSRNOT00000060143 2 1 1 80 17 30981873 30981891 CATGACATAGAGACCAGGC 57 30981934 30982704 AGACCTAGAATACTTGCACG 57 NA Rattus norvegicus 81 Drd4 ENSRNOG00000017927 ENSRNOT00000024137 1 1 1 102 1 214278693 214280198 TTTGTCTACTCCGAGGGTG 59 214280264 214280282 ACAGGTTGAAGATGGAGGC 60 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892,ENSRNOT00000082192 1 2 2 86 1 188701398 188701416 TGAGGAGGAAATGCACCTG 60 188693843 188701348 ACTGCTGATCGAAGAGCTG 60 NA Rattus norvegicus 81 Olr1130 ENSRNOG00000050565 ENSRNOT00000061325 3 1 1 60 8 18969945 18969965 TCTGCTTCATAGTCTGATGGT 59 18969984 18970005 GTGAAGGATTTCTAGGTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lysmd1 ENSRNOG00000021099 ENSRNOT00000028640 1 1 1 80 2 196305086 196305104 CCTGGAGCATCAATTGGAG 58 196305147 196308051 CGTTTAATCTGCTCCATCGT 59 NA Rattus norvegicus 81 Rn60_X_0640.3 ENSRNOG00000051114 ENSRNOT00000076629 3 1 1 70 X 63419189 63419207 TGTGGTCAAGAAACAGGAG 57 63361376 63361394 TGCCAAAGTTCTTAGGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Ptchd1 ENSRNOG00000003675 ENSRNOT00000044129 1 1 1 80 X 42595899 42595920 GCTGGAATCATCAATCTTACTG 57 42595959 42608786 TAATCCATGACCTAGCATGAC 57 NA Rattus norvegicus 81 Lmnb1 ENSRNOG00000013774 ENSRNOT00000019351 3 1 1 80 18 51818397 51818416 GAAGAACCAGAACTCTTGGG 58 51818459 51819947 CTCTGAGCAACCTCCTCTC 59 NA Rattus norvegicus 81 Stfa3 ENSRNOG00000033933 ENSRNOT00000051936 2 1 1 81 11 67312749 67313991 TCATGAAGGTGGATGTAGGG 59 67314032 67314053 AGTTTCAAATCATCGTCTCCAG 59 NA Rattus norvegicus 81 Olr1135 ENSRNOG00000049064 ENSRNOT00000073314 3 1 1 60 8 19081785 19081805 TCTTGAGAATGCCATCTTCTG 58 19081745 19081765 AGATGTGATGCACAAGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cml5 ENSRNOG00000015768 ENSRNOT00000021120 3 1 1 97 4 117531187 117531205 AACTTTGTCCCTGACACCA 59 117507549 117531128 CACTTTCCTTAAGACCTTGGG 59 NA InUTR Rattus norvegicus 81 Ccdc88b ENSRNOG00000024931 ENSRNOT00000067217 3 1 1 80 1 222106115 222106133 AGAACAGAGAACTGCTGGA 58 222105832 222106071 TAAGCTGGTCCAGGTACTC 58 NA Rattus norvegicus 81 LOC100361194 ENSRNOG00000033839 ENSRNOT00000048082 1 1 1 60 8 21271237 21271255 GCTTTCCCAAGATCCAGAG 58 21271277 21271297 CACAAACATGAGCAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam189b ENSRNOG00000020518 ENSRNOT00000027828 1 1 1 80 2 188496589 188496804 TCACTCTAGTGATCTCTTTCTTCTC 60 188496841 188496860 TACAGGAGAGGACAGAACCA 60 NA Rattus norvegicus 81 LOC100911032 ENSRNOG00000049185 ENSRNOT00000058389 1 1 1 80 4 102643970 102644367 TGGATTCCTGCTTCCAGAG 59 102644411 102644429 AGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 Pla1a ENSRNOG00000057153 ENSRNOT00000077727 1 1 1 80 11 64915827 64915845 ATACCAGCATCGAGGTCAC 59 64915884 64918542 CTTCAAGGTGATCTTTAGGTATGG 59 NA Rattus norvegicus 81 Rnf215 ENSRNOG00000004940 ENSRNOT00000006827 1 1 1 80 14 84369890 84369988 TGTAGTCCGAGAGTTGGAC 59 84370030 84370050 AGCTTGGTGACATTTGAAGAG 59 NA Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 3 1 1 62 X 67564139 67564322 AGGTAAGAAGGCCAAAGGG 59 67564347 67564366 GAATTCTTGGCAGGGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Utp6 ENSRNOG00000014209 ENSRNOT00000019044 3 1 1 80 10 67257301 67258562 AGACTCTGATCTTTGGCTGG 60 67257240 67257259 TAGATCTGTCCGCAGTTCTC 59 NA Rattus norvegicus 81 Cd4 ENSRNOG00000016294 ENSRNOT00000021915 2 1 1 80 4 157385159 157387866 GGTGGTGATGAAAGTGACTC 59 157385098 157385116 AGTCTCATCTTGGGTGAGG 58 NA Rattus norvegicus 81 S100a9 ENSRNOG00000011483 ENSRNOT00000015351 1 1 1 98 2 190099757 190100113 TAGCTTTGAGCAAGAAGATGG 58 190099679 190099701 CATACTTCCTAGAGTACTGATGG 58 NA Rattus norvegicus 81 Pglyrp3b ENSRNOG00000045617 ENSRNOT00000066410 3 1 1 80 2 191900327 191900346 GGGACCATTTGAAGATGCTG 59 191900387 191907738 AAACTATGGTAGGACTGCCAC 60 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822,ENSRNOT00000042524 2 2 2 80 1 166383845 166383866 GTTGACCATTGAGGAACATGAG 60 166383904 166384047 ACTTTATTTCGAGCCTTTACCC 59 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753,ENSRNOT00000075868 2 2 2 82 6 93440424 93441796 TATGCCAAGGAATCTTTGAAGG 59 93441839 93441857 AGAAATGGACACCAGAGGA 58 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863,ENSRNOT00000084155 1 2 2 80 6 41839147 41841790 AACGATCAGGAAGTCATCCC 60 41839086 41839104 CAGCTGGCTTTCCATTCTC 59 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 3 1 1 75 5 164921122 164921141 TAACGAGACATCACCTGCTG 60 164919115 164921084 GAGGTCACAGCAAGTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Lemd2 ENSRNOG00000025864 ENSRNOT00000035819 3 1 1 80 20 6550704 6551490 CAGGAGTACATAGCTAACGTG 58 6550644 6550663 CTTGTTGCTGCTCAGTATCC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138,ENSRNOT00000066384,ENSRNOT00000067546 1 3 3 80 2 41462213 41462232 GTTGAAACGAAGAAGGTGAC 57 41462274 41462988 CATATTCTGGAGGACCTGGA 58 NA Rattus norvegicus 81 Cyp4f40 ENSRNOG00000043344 ENSRNOT00000066654 1 1 1 80 7 14879524 14879544 TTTGATCCAGAGAACATCCAG 58 14879586 14879922 CTGTCCTATGCAGTTCCTG 58 NA Rattus norvegicus 81 Ints3 ENSRNOG00000015153 ENSRNOT00000020575 1 1 1 80 2 189771026 189771938 TTCCATCTACACAGAGTTTCC 58 189770966 189770984 GCAGAGTCAATAACAGCCA 58 NA Rattus norvegicus 81 Olr287 ENSRNOG00000018956 ENSRNOT00000025635 1 1 1 60 1 212652047 212652066 GAAACCTAGCCATCATCTCC 58 212652087 212652107 AAGTACATGGGTGTCTGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 3 2 2 80 X 62840408 62848346 ATTTGAAGGCCCTTTCAAGTG 60 62840348 62840366 GAGTGGTCTTGTAATGGCG 59 NA Rattus norvegicus 81 Mrpl50 ENSRNOG00000053615 ENSRNOT00000078957 2 1 1 82 5 64789252 64789270 GTCGGTTTGCAAGAAGAGG 59 64785829 64789209 CTTCTCCTTCCTGGATCTAGAC 59 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 3 2 2 74 6 51015567 51017094 ATAAAGCAACAGCGAACAGG 59 51015512 51015532 TGTTGATTTCCAGAACAGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nxf1 ENSRNOG00000019069 ENSRNOT00000026033 3 1 1 80 1 224964182 224964201 TTGTTCTAAACCGTAGAGGC 58 224964241 224964368 AGTTCAAAGACAATAGCTCAGG 59 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445,ENSRNOT00000064637 2 2 2 80 20 12899307 12899325 TGCAGCTGAAGAAGTATCC 57 12898578 12899264 TCTTGCTTCAACCTTTCCTC 58 NA Rattus norvegicus 81 Mir17-2 ENSRNOG00000035592 ENSRNOT00000053715 3 1 1 60 X 140117939 140117957 AAAGTGCTTACAGTGCAGG 58 140117897 140117918 AATGTAAGAAGTGCTTGCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdzd3 ENSRNOG00000008526 ENSRNOT00000011582 2 1 1 80 8 48579932 48580134 CAGCTCAATAGGAAGCTTTGTC 60 48579873 48579893 GTGACACTGTTCCTCTACCTC 60 NA Rattus norvegicus 81 Pdzd3 ENSRNOG00000008526 ENSRNOT00000011582 3 1 1 80 8 48579262 48579357 CTTCTTCAGCATGGTACGC 59 48579200 48579218 TTGGTTTCTGCCAGAGGAG 60 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 3 2 2 131 13 45316567 45318785 TGCCATGGAAATATACACTTCG 59 45316457 45316475 AAATAGATGGTGGGCAGGA 58 NA InUTR Rattus norvegicus 81 Dleu7 ENSRNOG00000009181 ENSRNOT00000065838 1 1 1 83 15 45369235 45369253 TAAGTGTGACTGCCAACTG 58 45361358 45369188 TTCCACGCTATCCTGTAGG 59 NA Rattus norvegicus 81 Adcy1 ENSRNOG00000059479 ENSRNOT00000088032 1 1 1 80 14 87413157 87413176 AAGATCAAGACCATTGGGAG 57 87413219 87416981 GATGGACTTCTTAGCCCTG 57 NA Rattus norvegicus 81 Mrpl48 ENSRNOG00000018042 ENSRNOT00000024290 2 1 1 80 1 165588398 165594687 CCATTTATTCTGCAGGTGGT 58 165588337 165588355 GTCTGTATCTTCCGATGCC 58 NA Rattus norvegicus 81 Fgf8 ENSRNOG00000017524 ENSRNOT00000023558 3 1 1 108 1 265497714 265497732 GGACCTACCAGCTCTACAG 59 265494407 265497642 ACAATGAGCTTTGCGAAGG 59 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000011494 ENSRNOT00000057222 1 1 1 80 X 105404879 105404898 AGATCTAAGAGGATGCTGGC 59 105404941 105405273 GATCACTTGGCCCTTTCTC 58 NA Rattus norvegicus 81 AABR07048271.1 ENSRNOG00000033271 ENSRNOT00000047780 2 1 1 84 5 69851383 69860121 CATGTTCCCAGCAGTTTGG 59 69860166 69860187 TACCAGAGCATCTTTCTGAGAC 60 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075896,ENSRNOT00000075125 3 2 5 83 15 10289869 10291580 AAGTTCTTTAAAGCGGCCTC 59 10289805 10289823 ATTCAGCTGAGTCTGAGCC 60 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076754,ENSRNOT00000075125 1 2 5 95 15 10281830 10281848 TGACAGAAGAGAAGCTCGC 60 10281316 10281774 CAAAGAGTACCATGGAATTGCA 59 NA Rattus norvegicus 81 Cep95 ENSRNOG00000014354 ENSRNOT00000066525 3 1 1 80 10 95004267 95004286 GGAATACCTCTGCTCAGGTC 60 95004329 95006807 ACATCACCTGGTTCCACAG 60 NA Rattus norvegicus 81 Sec22a ENSRNOG00000043069 ENSRNOT00000063795 2 1 1 97 11 68653705 68672873 AAGATTTCTTCTGCCCACC 58 68672931 68672952 CGAATTAAATTCAGAGCTCCAC 58 NA Rattus norvegicus 81 Cend1 ENSRNOG00000045680 ENSRNOT00000074016 3 1 1 62 1 214408362 214408380 CAGCCACTACCAAGAAGAC 58 214408318 214408336 GGTTGCTGTGATTGTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl32 ENSRNOG00000007441 ENSRNOT00000050653 2 1 1 80 5 39032749 39063228 CTCATCCAGGAACTAAATAGCT 58 39032690 39032709 CTTCTCCAACAAAGTGAGGT 58 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215,ENSRNOT00000044390 2 2 2 80 1 214057524 214061511 GAAACATGTAGGCCTCATTCAC 60 214057465 214057483 ATGACCAGAATGACCAGCA 59 NA Rattus norvegicus 81 LOC102553119 ENSRNOG00000014212 ENSRNOT00000019670 1 1 1 109 9 71311492 71311510 GTATCTGGAGATGGGTGCC 60 71305228 71311419 TAGTCACATGAGCACCCAG 59 NA Rattus norvegicus 81 Fgl2 ENSRNOG00000012881 ENSRNOT00000017232 3 1 1 81 4 10328687 10328706 CTCTGTGGTCAACAGTTTGG 59 10326676 10328646 TAGATGTTGAACTGGATTTGGC 59 NA Rattus norvegicus 81 Rn60_5_0814.9 ENSRNOG00000051186 ENSRNOT00000076104 3 1 1 85 5 78002406 78003109 CTCGATGGGAAATCAAGATCC 59 78002341 78002361 TATTCACCCTTCCTGAAGACC 59 NA Rattus norvegicus 81 Rps15a ENSRNOG00000018320 ENSRNOT00000024678 3 1 1 81 1 187760805 187765292 AGGAAGGTTGAACAAGTGTG 58 187760743 187760763 CAGATTGTTCTGCCACTTCTC 59 NA Rattus norvegicus 81 LOC498152 ENSRNOG00000030354 ENSRNOT00000043992 2 1 1 83 12 17226322 17226340 GATCTCTTTCCAGACACGC 58 17226387 17231914 TCTACCAGCTCTTGTAGCT 57 NA Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000033661 1 1 2 81 1 88353115 88356853 CTCACTGGATCTGGAGTCC 59 88353052 88353074 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Ahcyl2 ENSRNOG00000039300 ENSRNOT00000025165 1 1 1 80 4 57156565 57163884 TCAGACGGCTGTACTTATGG 59 57163925 57163945 AGAGTGGAGTAGATGTTGCAG 60 NA Rattus norvegicus 81 Ttc36 ENSRNOG00000014700 ENSRNOT00000019933 1 1 1 82 8 49109778 49109797 CATCCTCAACCCTAATACCC 57 49108825 49109734 AAACTCCATCTTCATCTCCC 57 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 1 2 2 80 5 22393171 22469218 GGGATCAGAGTAGGAACTCC 59 22469259 22469279 GCTCAGGATCTTCGATAAGGA 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776,ENSRNOT00000089894 1 2 2 80 10 104139824 104139844 TTTCCATGCTGAATACAGCTC 59 104139641 104139785 ACTTCACTTTCATTGACTTGGG 59 NA Rattus norvegicus 81 Tescl ENSRNOG00000019427 ENSRNOT00000026268 2 1 1 60 1 81193065 81193085 TTCGAGGACTTCTTCAAGACC 60 81193025 81193043 AGCTGACTTGCATCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 2 2 3 92 6 76701665 76702744 CAATTAGGAAGGCAATGGCT 59 76705063 76705081 CAGATCTAGCACTGTGCAG 58 NA Rattus norvegicus 81 Ly6e ENSRNOG00000007091 ENSRNOT00000076364 2 1 1 60 7 116356877 116356897 GACTTGAACTGCTTTCTTCTG 58 116356919 116356937 CTCACAGAAGCCAGATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066 3 1 3 81 13 50564742 50564760 CCCGGAGGAATTGAAGGAG 60 50564205 50564697 CACCACGTTCTGCATACTG 59 NA Rattus norvegicus 81 Nufip1 ENSRNOG00000001033 ENSRNOT00000001366 3 1 1 80 15 58176157 58177091 ACTGGAGAAATATGCACGC 58 58177135 58177153 TTTCTTCCCTCCATCTTGC 57 NA Rattus norvegicus 81 Rn60_5_0814.19 ENSRNOG00000051122 ENSRNOT00000075877 2 1 1 80 5 77742265 77742286 TTCAGGAAAGGTGAATAAGGAC 58 77736627 77742224 TCTTGTTGGACCTTTGCAC 59 NA Rattus norvegicus 81 Yipf4 ENSRNOG00000005610 ENSRNOT00000007607 1 1 1 83 6 22130191 22133559 AGTTTAGGGTGGTCTCATGG 59 22130127 22130145 CTCCACCAAGAACCCTAGC 60 NA Rattus norvegicus 81 Pcdhb10 ENSRNOG00000029244 ENSRNOT00000040125 2 1 1 82 18 30489865 30489883 GATGTTAGCGGAACTGGGA 60 30489927 30491594 TGAAGAGAAGCAGTTCCAGAG 60 NA Rattus norvegicus 81 Magea11 ENSRNOG00000003532 ENSRNOT00000004684 2 1 1 85 X 141848916 141853996 GTGCTTGAAGACCACTCTC 58 141854045 141854063 TTGATCATGCTTCTGCCTG 58 NA InUTR Rattus norvegicus 81 Fxyd4 ENSRNOG00000014578 ENSRNOT00000019649 1 1 1 80 4 149986612 149986632 GGAATAACCTGTGCCTTTCTC 59 149985621 149985762 GGGACTGCCTTTATCAACTG 59 NA Rattus norvegicus 81 Icoslg ENSRNOG00000023109 ENSRNOT00000038547 1 1 1 80 20 11335667 11335686 TGTGGATGTTATCTGCTGTG 58 11334153 11335624 CCAGTGAAACTATCTGCCC 58 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000074007 3 1 2 80 10 94193710 94193729 GAAGACAGCATACGGTAGAG 58 94193771 94193900 ATGATTTCTTCGAGGTCAGG 57 NA Rattus norvegicus 81 Bst2 ENSRNOG00000059900 ENSRNOT00000091906 1 1 1 107 16 19941283 19941301 AAGGTGTCTCAAACCCAGG 60 19939314 19941215 TGTGGTAGAAATTTCCTTTCCC 59 NA Rattus norvegicus 81 Syn1 ENSRNOG00000010365 ENSRNOT00000014250 3 1 1 80 X 1333011 1333121 GTAGAGCAAGCTGAATTCTCC 59 1333163 1333181 CCGAAGAACTTCCATGTCC 58 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 3 2 2 80 11 64837655 64837673 TCGTTCAAAGGTACGAAGG 58 64834630 64837611 TAGGGAAGTCAGCTCTGAC 58 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000012988 1 1 2 80 15 37714760 37714781 TGTATGCAGAAGCACTAAACAC 59 37714819 37715955 TATTCACTTTCAGTCTTCCTGC 59 NA Rattus norvegicus 81 Olr1257 ENSRNOG00000045625 ENSRNOT00000072172 2 1 1 60 8 42430706 42430727 TTCATTGACCTCTGTTACTCCA 59 42430667 42430685 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 1 2 2 80 9 78927602 78927620 CTGTGAAGAACGAGGAGGA 59 78925760 78927559 CAGGCAGGAGATTTGTTAGG 58 NA Rattus norvegicus 81 LOC688282 ENSRNOG00000045889 ENSRNOT00000074899 2 1 1 81 10 106800187 106803759 CAGACAGAAGGCATCACCA 60 106803801 106803822 GGATGTCACAGGTTATAAGCAC 59 NA Rattus norvegicus 81 Plcb3 ENSRNOG00000021150 ENSRNOT00000028720 1 1 1 80 1 222215529 222215770 GTTCGTGGAATACAACAAACAG 59 222215470 222215488 TGAGGCATGTAGTTGGAGG 59 NA Rattus norvegicus 81 Rn60_5_0814.31 ENSRNOG00000051026 ENSRNOT00000075915 1 1 1 81 5 77336943 77337697 CTCGATGGGAAATCAAGATCC 59 77336882 77336905 CACCTTTCCTATAGAACATTGCTC 60 NA Rattus norvegicus 81 Vmac ENSRNOG00000048897 ENSRNOT00000073402 1 1 1 60 9 10340084 10340102 GACCAGATGATCCAGGAGC 60 10340126 10340144 GTTGTCGAGTGATGTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vmac ENSRNOG00000048897 ENSRNOT00000073402 2 1 1 61 9 10340083 10340101 GGACCAGATGATCCAGGAG 59 10340126 10340144 GTTGTCGAGTGATGTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064395,ENSRNOT00000064345 2 4 4 80 3 111757460 111758443 ATGGCTCAGTCAGAGAACG 60 111758487 111758505 CAAATCTTCCTCTGCAGCC 59 NA Rattus norvegicus 81 Tead3 ENSRNOG00000000506 ENSRNOT00000000607 3 1 1 81 20 7914945 7914964 CTGTCTTCTCCACCTCAAGG 60 7914514 7914819 AAGGGCTTGATGTCCTGAG 59 NA Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 3 1 1 65 6 107555752 107555773 CTGGAGTACTTTGAAGAAGCTG 59 107555799 107556976 AATTCCTGGACCCTTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Ren ENSRNOG00000002937 ENSRNOT00000003951 1 1 1 80 13 50506866 50507635 AGATGTGGTAACTGTGGGTG 60 50506805 50506823 AGCATGAAGGGTATCAGGG 59 NA Rattus norvegicus 81 Mir224 ENSRNOG00000060270 ENSRNOT00000088901 1 1 1 60 X 152223797 152223816 GGTTCCGTTTAGTAGATGGT 57 152223756 152223774 GCTTTGTAGTCACTAGGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000007160 1 1 2 80 6 29239049 29239067 ATGGGCTACAAATGCTTCG 59 29204723 29239008 CCTTCAACATTTCTTTAGGGTG 58 NA Rattus norvegicus 81 Olr245 ENSRNOG00000030215 ENSRNOT00000043135 3 1 1 60 1 172243218 172243236 TGTTCCTCTCACCTCACAG 59 172243259 172243278 TCAAGTAGACAAAGCAGGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr4 ENSRNOG00000010522 ENSRNOT00000014020 3 1 1 80 5 82587740 82592997 CCTGCATAGAGGTACTTCCT 58 82593038 82593058 AATAAGGGATGTCATGAGGGA 58 NA Rattus norvegicus 81 Pprc1 ENSRNOG00000018561 ENSRNOT00000025221 1 1 1 80 1 265825097 265825115 AGCTGAAGCAGAGGTTCTC 59 265825157 265825605 AACCATAGTTGTCACCTTGGA 59 NA Rattus norvegicus 81 Zgrf1 ENSRNOG00000036980 ENSRNOT00000014695 3 1 1 80 2 231911247 231911265 TAATTCACCATCCTGCCAC 58 231911308 231912933 AATAGACGGCCCTTATTTGG 58 NA Rattus norvegicus 81 LOC100362978 ENSRNOG00000045804 ENSRNOT00000039860 2 1 1 145 11 67437907 67440351 TTGCTGACAAAGTCAGAGC 58 67436440 67436459 TATGTGGAGGAAACAACCAC 58 NA Rattus norvegicus 81 Endod1 ENSRNOG00000024757 ENSRNOT00000033969 1 1 1 60 8 12902041 12902061 CCCACTCACAAATTCAGTTCC 60 12902001 12902019 GAGATTCATGTGCCATCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Endod1 ENSRNOG00000024757 ENSRNOT00000033969 2 1 1 60 8 12902035 12902056 TCACAAATTCAGTTCCGATGAC 59 12901996 12902015 CTGTTGAGATTCATGTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spic ENSRNOG00000005720 ENSRNOT00000064241 3 1 1 80 7 29228710 29228731 GAGGCAATTCTAACTACTGTGG 59 29228120 29228673 CAGAACCATTTGTTACACCTCTC 60 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 1 2 2 80 11 67672245 67672974 AGAATTTGCTAAGGTTTCTCCC 59 67672186 67672204 GCATCAGCCAGTACATCAG 58 NA Rattus norvegicus 81 Ddrgk1 ENSRNOG00000021232 ENSRNOT00000030192 1 1 1 80 3 123200303 123203379 GAAGGAAGAACAGAAGGAAGAG 59 123200244 123200262 AGTTTCAGGTACTCCTCGT 58 NA Rattus norvegicus 81 Ddrgk1 ENSRNOG00000021232 ENSRNOT00000030192 2 1 1 80 3 123200303 123203378 AAGGAAGAACAGAAGGAAGAG 57 123200243 123200261 CAGTTTCAGGTACTCCTCG 57 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308,ENSRNOT00000091545 1 3 3 80 2 113764831 113764850 TTTGAAGATATCGCAAACGC 58 113764890 113768939 GAAGATTTCTGGACTTAACCAC 57 NA Rattus norvegicus 81 Ccdc6 ENSRNOG00000024019 ENSRNOT00000032159 2 1 1 80 20 19752359 19754387 CTAGAAGCTGAGAAGAGAATCCT 59 19752301 19752320 CATGGAGATGTCTCTAGGCG 60 NA Rattus norvegicus 81 Cul3 ENSRNOG00000015633 ENSRNOT00000021528 1 1 1 80 9 86069110 86069689 GGAGAAGTTGTAGACAGAGGAG 60 86069051 86069074 ATAGACTGATCTTCCTTCAAGACC 60 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000006466 ENSRNOT00000008523 1 1 1 84 4 82257234 82258211 TAGTCACGACAACATAGGTGG 60 82257170 82257188 TTCTTTCTCCAGCTCCAGG 59 NA Rattus norvegicus 81 RGD1564114 ENSRNOG00000028805 ENSRNOT00000049889 2 1 1 80 3 7542393 7542412 CAGCAGCTATGGATACAGGA 59 7535833 7542352 CTTTCCCAGGATTACCTTCTG 58 NA Rattus norvegicus 81 Adap2 ENSRNOG00000037148 ENSRNOT00000056273 2 1 1 80 10 67522474 67524105 GGTCCAAAGCATAGAGAACC 58 67524144 67524166 GTTCTTATAATACAGCAGCCTCC 59 NA Rattus norvegicus 81 Pgr15l ENSRNOG00000021547 ENSRNOT00000035405 3 1 1 80 X 66318794 66319214 TCTCGTCAACATGGATGGT 59 66319256 66319276 ACATACTTCGAAACCAGTGTG 59 NA Rattus norvegicus 81 Rapgef1 ENSRNOG00000014316 ENSRNOT00000060977 1 1 1 80 3 8292017 8292036 AAGTGGATGAACTGTCCCTC 60 8292079 8293513 CTGGTCCATCATCACCCTC 60 NA Rattus norvegicus 81 Olr1462 ENSRNOG00000022244 ENSRNOT00000035285 1 1 1 60 10 45922994 45923013 GAGCAGGGCAAGTTTATCTC 59 45922953 45922971 TGAAAGGGTTAAGGGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabl3 ENSRNOG00000026085 ENSRNOT00000031741 1 1 1 80 11 66076525 66076545 GTGCCACAATCAAGTGTTAGG 60 66066016 66076488 CCTTCTTTGTAGTCATGAACTCTG 60 NA Rattus norvegicus 81 Hibadh ENSRNOG00000008063 ENSRNOT00000011069 2 1 1 80 4 82607258 82607276 GGTTATGGATGGAGTTCCC 57 82605227 82607214 GCTAATCCCAGATCCTTGG 57 NA Rattus norvegicus 81 Rn60_X_0637.3 ENSRNOG00000051241 ENSRNOT00000076267 3 1 1 60 X 63102435 63102454 GAAGCGCATCATCGATTCTG 60 63102394 63102413 CTTCTTGCTGATGTCCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689618 ENSRNOG00000028533 ENSRNOT00000029558 2 1 1 91 3 171603065 171603799 ACATCAAGATTCTCCCATCG 58 171603853 171603871 CTTCTCCAAGCAGTACAGG 58 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 3 2 2 80 X 78770641 78770661 GGGATCTGACCTATGGAAGAG 59 78770702 78771473 GAAGGAAACATACGTCTGCC 59 NA Rattus norvegicus 81 Alx4 ENSRNOG00000000008 ENSRNOT00000000009 1 1 1 80 3 82576125 82576143 TACCCTGATGTGTATGCCC 59 82576187 82582885 GTTCTGGAACCAAACCTGC 59 NA Rattus norvegicus 81 Pde3a ENSRNOG00000025042 ENSRNOT00000032843 1 1 1 80 4 175687750 175687922 GCAAGTGACTCTGATTCTGAC 59 175687964 175687982 ATCTGGCACATGATACGCT 59 NA Rattus norvegicus 81 Pde3a ENSRNOG00000025042 ENSRNOT00000032843 3 1 1 80 4 175687753 175687926 AGTGACTCTGATTCTGACAGTG 60 175687966 175687985 GTCATCTGGCACATGATACG 59 NA Rattus norvegicus 81 Mir183 ENSRNOG00000035451 ENSRNOT00000053574 1 1 1 60 4 57463621 57463643 GGTAGAATTCACTGTGAACAGTC 60 57463583 57463601 CTGCTCTGTTTATGGCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbr1 ENSRNOG00000005049 ENSRNOT00000065340 1 1 1 80 3 47679822 47680432 AAACAACAATGGGCAGATGG 60 47680474 47680493 TCCTCATTCACTTCCACCAC 60 NA Rattus norvegicus 81 Fam181b ENSRNOG00000010763 ENSRNOT00000014284 1 1 1 60 1 157921132 157921150 CAAGTCCAAGCGGAAAGTG 60 157921174 157921192 ACTGCAACGTTTGATCTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam181b ENSRNOG00000010763 ENSRNOT00000014284 3 1 1 61 1 157920917 157920935 ATACCCTTCGGTTTCGGAG 59 157920960 157920978 TTGTCCAGACTTCCGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou4f3 ENSRNOG00000018842 ENSRNOT00000025465 3 1 1 83 18 36713920 36713938 GAACCCAAATTCTCCAGCC 59 36713985 36714324 TATATTACCCTGCAGCTGC 57 NA DesignRelaxed Rattus norvegicus 81 AABR07028012.1 ENSRNOG00000053439 ENSRNOT00000081052 1 1 1 61 17 52939824 52939842 GTCAGCCCATCATTGTGAC 59 52939983 52940001 TGTTTCTGAAGCGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Aldh16a1 ENSRNOG00000020623 ENSRNOT00000027992 3 1 1 80 1 101142451 101142773 GTGGACAGGTATTCCAAGCT 60 101142390 101142408 CTGGAGGAAGACCAGAGAC 59 NA Rattus norvegicus 81 Specc1l ENSRNOG00000001303 ENSRNOT00000001764 3 1 1 80 20 14346749 14347981 CAGGAGACTTCGGGAAGAG 59 14346687 14346707 ATGTCATTTGCAATGACCACC 60 NA Rattus norvegicus 81 RT1-M1-2 ENSRNOG00000031065 ENSRNOT00000038820 3 1 1 80 20 2409389 2409674 CTAACAGCACGACTAATCACAC 60 2409330 2409351 GGATTCCATGACTGAAGTAACC 59 NA Rattus norvegicus 81 LOC691921 ENSRNOG00000026982 ENSRNOT00000031297 3 1 1 94 7 27221591 27224097 GCCTGACCTGACAATACCT 59 27224155 27224173 AGACCTGAGATTCACGGTG 59 NA Rattus norvegicus 81 Olr796 ENSRNOG00000046306 ENSRNOT00000075514 1 1 1 60 3 103657181 103657202 ATTCAACTGCTTCTCTTTCTGG 59 103657220 103657241 AGTTTCCCATCATGTTTGTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo16 ENSRNOG00000014003 ENSRNOT00000018762 2 1 1 81 15 48705771 48705789 CTTCAAGCAGCAGTTTCGA 59 48705833 48723100 CAGGGACATCAATGACTGTG 59 NA Rattus norvegicus 81 Myt1 ENSRNOG00000017346 ENSRNOT00000031448 1 1 1 80 3 177335980 177336679 AAGACAAGTGATGTGCTGGA 60 177336718 177336740 CAAGTTGGACTCATTCAAGTCTC 60 NA Rattus norvegicus 81 Jazf1 ENSRNOG00000027026 ENSRNOT00000039580 2 1 1 80 4 82963789 83137422 AACCACATCGATACAGATCCA 59 82963729 82963749 ATTAATGTAACTGAGGGCGAC 58 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 3 1 1 74 20 2541198 2541218 AAATACACATGCCATGTGGAG 59 2541022 2541162 CATACTGGACTGAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 3 2 2 133 2 198114403 198114966 CATCCTGGATGAGGTCACC 60 198112893 198112911 CTGAGGTAGAGGTGGAAGC 59 NA Rattus norvegicus 81 Ccl7 ENSRNOG00000000239 ENSRNOT00000000256 3 1 1 85 10 69424041 69424412 GGAAGCTGTTATCTTCAAGACC 59 69424458 69424476 AGTATGCTATGGCCTCCTC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000085906 1 2 8 80 13 68719270 68719484 CTCTTAACATTCGTAGACACCAG 59 68719524 68719542 TCCAAGATTCTGCACCTCC 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000084458 2 1 8 60 13 68717221 68717241 CTTTCAGAGATTGGCAGAACC 59 68717261 68717281 GTATCCTTCAGACAATGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 80 1 24189652 24189671 GAAGAAGCATTCTATGCCGT 59 24189480 24189614 CTCTGACATAATATGCTTCTCCTC 59 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 2 2 2 80 4 8141890 8143148 GGGATATGCAAGGGAAGAG 57 8143192 8143210 TTTCATCCAAGGCTGTCTC 58 NA Rattus norvegicus 81 AABR07039303.1 ENSRNOG00000053857 ENSRNOT00000082660 3 1 1 80 X 73580179 73580201 CCTTACATCAAGACAGATAGCTC 59 73580241 73580260 CTCCCAACCAAATTCCTCC 58 NA Rattus norvegicus 81 Pknox1 ENSRNOG00000001184 ENSRNOT00000001566 2 1 1 80 20 10340720 10342018 CAGACAACTTAATGGTGAAAGC 58 10342058 10342077 CTTTACAGAGCTCGTTCACC 59 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066,ENSRNOT00000013851 3 2 2 97 1 157654845 157654863 ACCTGTGAGGAATCCTTCC 59 157654923 157659070 ATCTTGTTGCCCACTAACAC 59 NA Rattus norvegicus 81 Tas2r114 ENSRNOG00000005692 ENSRNOT00000007497 3 1 1 60 4 165831508 165831530 TGACTATTGCATTCCTCTATCCC 60 165831470 165831491 CGGCTGTATGCTAGAATTAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd8 ENSRNOG00000013390 ENSRNOT00000017889 1 1 1 82 4 127165615 127165633 TAGTGGAAGTGGATCACGG 59 127165677 127170200 GAACATGGATCTGAAGTACGG 59 NA Rattus norvegicus 81 Kbtbd8 ENSRNOG00000013390 ENSRNOT00000017889 2 1 1 82 4 127165678 127170202 CGTACTTCAGATCCATGTTCAC 59 127170245 127170263 CGATTCAGCTTCAACACCG 60 NA Rattus norvegicus 81 Olr29 ENSRNOG00000049938 ENSRNOT00000049595 2 1 1 60 1 150261645 150261665 AAGGATTTCTTGCTCTGACAC 59 150261605 150261624 ACAGACACCAATTCCAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc61 ENSRNOG00000008234 ENSRNOT00000010864 3 1 1 95 4 78187265 78188678 AGTCACGTGAGGTATCACTG 59 78188736 78188754 GTGAGCAGCTCTAGGAGTG 60 NA InUTR Rattus norvegicus 81 Zbtb20 ENSRNOG00000056716 ENSRNOT00000081443 2 1 1 80 11 62018512 62026230 GTACATACAGGTGAGAAGCC 58 62018451 62018472 CATGTGCTTGATAAGGTAATCC 57 NA Rattus norvegicus 81 Sap30l ENSRNOG00000002575 ENSRNOT00000003473 2 1 1 80 10 43229941 43231488 CCAGCTAGCAGAGACTGTG 60 43231529 43231550 ATGTAGATGAAATAGGCAAGCG 59 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 1 2 2 107 4 7109883 7110525 ATAGAACAACTGCAGGCTC 58 7109794 7109812 AGAGTGTGGAATGAATGGG 57 NA Rattus norvegicus 81 Olr1132 ENSRNOG00000039919 ENSRNOT00000061323 1 1 1 60 8 19020283 19020301 CGTCCTCACCATGTTTCTC 58 19020241 19020260 GATGATAAGCAGGTTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkar1b ENSRNOG00000028733 ENSRNOT00000031896 1 1 1 80 12 17666804 17666822 GGGAAACAGTCATACAGCA 58 17678317 17679837 CGTTCACATATACCTCCACC 58 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 3 2 2 94 1 101379422 101379564 GGCTAGAGTGAACTATGACAC 58 101375213 101375233 GTTTACTGTAGACCATGTGGA 58 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160,ENSRNOT00000020204 3 4 7 80 17 57060107 57060125 GACACCACCTAACATTGCT 58 57060167 57067503 TGGGCTATAGCAATGTATTGC 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000092187,ENSRNOT00000020012,ENSRNOT00000089536 3 3 7 79 17 57082679 57082697 AGCAGAAGAAGCAACTCGA 59 57087779 57087797 TCTTCTTCCTGCGACACTC 60 NA DesignNoJunction Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 3 2 2 66 5 90339038 90348626 CATACCTCGAAATGCTGGTG 59 90348655 90348673 TGATCTTGCAACCATGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Tdrd3 ENSRNOG00000009034 ENSRNOT00000012440 3 1 1 81 15 70801917 70801935 AAATCGGGAGGTTTCACAG 58 70801975 70802449 CTCATCAACCAGTTCTCTATAGAC 58 NA Rattus norvegicus 81 Rasl12 ENSRNOG00000032339 ENSRNOT00000046914 2 1 1 98 8 70926288 70928272 CAGTACAGGCAAGTCACCA 60 70928334 70928352 CACATGCTCAAAGTCCAGG 59 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000055523 ENSRNOT00000052183 1 1 1 80 10 60812205 60812359 ATCCTTAAGGTTCCTTCAACTC 58 60812400 60812418 GAAGAGTGACACCACAGAC 58 NA Rattus norvegicus 81 Commd10 ENSRNOG00000003958 ENSRNOT00000005260 3 1 1 81 18 41030865 41030883 AATGCCTGGTCGACTATGG 60 41030926 41052448 CCACTGTCTCTAGCTTGAGAG 60 NA Rattus norvegicus 81 Stxbp5l ENSRNOG00000002496 ENSRNOT00000041715 3 1 1 80 11 66495577 66495598 AACAGAGCTGAATGATAGTCCA 59 66495636 66538245 CAGTGTCCATTTACATGGTCTG 59 NA Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000061166 2 1 2 83 2 30666585 30666604 ACACTAGGCAAAGAACTTGC 59 30666650 30674191 ATCGTACAAGTGCCCTTCC 60 NA Rattus norvegicus 81 AABR07009224.1 ENSRNOG00000042602 ENSRNOT00000068507 3 1 1 67 2 89498259 89498279 CAAGAAAGTCGACATTGAAGC 58 89498212 89498230 CTTTGTGAACAGAGCAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 2 2 2 80 4 176007114 176007132 ATTGGTGTTGGATGTGCAG 59 176002976 176007073 ATATTCATATTGGCCCATGAGG 58 NA Rattus norvegicus 81 Mir291b ENSRNOG00000056886 ENSRNOT00000092137 3 1 1 69 1 64537912 64537930 GGAAGTTGGAACACAGGGT 60 64537861 64537879 AAATGGATGCACTTTCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 3 2 2 80 15 36940144 36940163 CTGTACTTTGCAAAGCAGTG 58 36940206 36942785 TGCAACTCTTGAAAGGGTC 58 NA Rattus norvegicus 81 Kank4 ENSRNOG00000007779 ENSRNOT00000066139 1 1 1 80 5 117397197 117399228 GGTTAACGGTGGCTATGAG 58 117397135 117397153 TCACTGTCAGACAAGTCCT 58 NA Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 3 1 1 99 12 2543666 2544172 GTGTCTGCCTCAGGATGAG 60 2543585 2543603 TACTGTAACCACGATGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Gfod2 ENSRNOG00000017953 ENSRNOT00000024197 2 1 1 80 19 37695094 37695113 AAGATGTAGACCTGGTTTGC 58 37684258 37695052 TCTTCCCAATTCCTAGAGCC 59 NA Rattus norvegicus 81 Olr399 ENSRNOG00000060108 ENSRNOT00000089297 1 1 1 60 3 15856980 15856999 GAATCTGCAAAGCCTTGTCC 60 15857021 15857040 CCGTAGTACAAGGAAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpsf3 ENSRNOG00000052418 ENSRNOT00000091061 1 1 1 80 6 43369568 43370741 TTCTGTTGATCAGTCACTTCC 58 43370782 43370801 TCCGTCCTTTGAAACTTGTC 59 NA Rattus norvegicus 81 AABR07054897.2 ENSRNOG00000048755 ENSRNOT00000072350 1 1 1 60 3 173265086 173265105 TACCAAGATGTGATGCTGGA 59 173265045 173265068 CATTCCTTGCATTACCTATAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054897.2 ENSRNOG00000048755 ENSRNOT00000072350 3 1 1 60 3 173265090 173265110 GTCTCTACCAAGATGTGATGC 59 173265050 173265072 CTTGCATTACCTATAGCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Poglut1 ENSRNOG00000003014 ENSRNOT00000051428 3 1 1 80 11 64765109 64765129 TCAATGTCCGAGACTATCCTC 59 64765169 64767819 ACTCCGATGTCTTACTGAAGG 59 NA Rattus norvegicus 81 Baiap2l1 ENSRNOG00000001007 ENSRNOT00000060843 2 1 1 80 12 12306351 12308248 AACAACTCCACAGCAAACAC 60 12308290 12308309 CTTCATCATGTTCAGCCCAG 59 NA Rattus norvegicus 81 LOC685406 ENSRNOG00000033407 ENSRNOT00000048225 3 1 1 108 4 82639921 82643831 GCTTCAGAGACAGTGTACTC 58 82643902 82643920 ACTGTATGAAATGGTCCGC 58 NA Rattus norvegicus 81 Olr1392 ENSRNOG00000046072 ENSRNOT00000051001 3 1 1 60 10 34645528 34645546 GACCTTCGACTGCAAACAC 60 34645570 34645588 AGAGGTCCAGGAAGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Skap1 ENSRNOG00000023881 ENSRNOT00000030159 2 1 1 83 10 84576427 84576447 ACGTTTACGAAGTCCTACCAG 60 84586072 84593924 AATCGGCATAGTCCACTCG 60 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 2 3 3 80 4 125716805 125718358 GGGAACCCATTTATATCGGT 57 125716744 125716765 TTAATTCATCTCCAGACCTCAG 57 NA Rattus norvegicus 81 Olr825 ENSRNOG00000048952 ENSRNOT00000050694 1 1 1 60 4 148545355 148545377 GCAAACCTCTACATTATCCAACC 60 148545396 148545415 ACAGTAACGAGAAGGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 1 2 2 80 13 90460110 90460129 TTGGCTTATGACGACTTCAG 58 90458701 90460069 TTGATAGCACTGCTTGATGAC 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000086980 2 1 4 91 5 104652112 104656795 GGTCAGAGTGCTCTGTGAG 60 104656850 104656868 GACAACAGTGGAGACTCCA 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000086980 3 1 4 92 5 104652112 104656795 GGTCAGAGTGCTCTGTGAG 60 104656851 104656869 TGACAACAGTGGAGACTCC 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 1 3 3 80 5 117605612 117606738 AGACTGGAGGGATTCTATGG 58 117605551 117605572 ACACTTGTCTACAGGATTAGAG 57 NA Rattus norvegicus 81 Apobec2 ENSRNOG00000012303 ENSRNOT00000016893 3 1 1 65 9 14529431 14529449 AAGGAGCTGATCGATCTGC 60 14538340 14538359 AAAGAAGTTGACAGGCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Asb12 ENSRNOG00000004197 ENSRNOT00000086265 1 1 1 105 X 64714609 64715033 CTACAAGCCCGAGCTACTC 60 64714522 64714540 TATCCAACTGGTCGATGGC 60 NA Rattus norvegicus 81 Cd3d ENSRNOG00000015994 ENSRNOT00000021488 1 1 1 80 8 49285726 49285749 TGTATATGTGTAATGGGACAGAGG 60 49285788 49286216 CACAGTTCTGGCACATTCG 60 NA Rattus norvegicus 81 Stfa3l1 ENSRNOG00000030984 ENSRNOT00000049463 1 1 1 91 11 67551149 67551168 CTGTTACCTCTAGCATTCCC 58 67544719 67551095 TGGTTTGACCAGGTAACAG 57 NA Rattus norvegicus 81 Rn60_5_0814.24 ENSRNOG00000051211 ENSRNOT00000076017 3 1 1 85 5 77481369 77482095 CTTGATGGGAAATCAAGATCCC 59 77481305 77481324 TATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Rad51c ENSRNOG00000006661 ENSRNOT00000008846 3 1 1 82 10 74698605 74702359 CCATTTCAGATCACACCTCAG 59 74698543 74698564 CGGAAGTTCAAAGAACTTTCTG 58 NA Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 1 2 2 80 6 10961896 10961915 AATGCTTCAGCCATTTACGA 58 10961957 10962525 TTCTAGGCACTCAGAAAGCA 59 NA Rattus norvegicus 81 Slfnl1 ENSRNOG00000009906 ENSRNOT00000013193 1 1 1 198 5 139471801 139472011 GTGCCTCTCAAGGTACTCC 60 139472776 139472794 CATCCACCTTCTCCTCCAG 59 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 3 2 2 80 3 148668062 148669374 GTCAACAAGATCTACCTGCAC 59 148669416 148669434 GTGCTCCTGATCCTCTTCC 60 NA Rattus norvegicus 81 Il17b ENSRNOG00000019695 ENSRNOT00000026679 2 1 1 139 18 57013749 57013767 AGTACGAGAGGAACCTTGG 58 57013870 57015683 GTGATTGATGCTGTAGCCC 59 NA Rattus norvegicus 81 Rab19 ENSRNOG00000009030 ENSRNOT00000012280 1 1 1 83 4 67174020 67174038 ATTCGAGTCTGTCCCTCAC 59 67174085 67175292 GATTTGTTCCCGATCAGCA 58 NA Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000024434 1 1 2 82 16 19996453 19996471 TACAGAGGAGCAACAGGAC 59 19993310 19996408 CTCTCCTCAGGTCATCATGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551,ENSRNOT00000066879 1 2 4 80 2 78263542 78265211 AGGAAGACGACGAAGATTGG 60 78265254 78265272 CATCCTCTTCCTCCACTCC 59 NA Rattus norvegicus 81 Srfbp1 ENSRNOG00000014808 ENSRNOT00000020030 1 1 1 84 18 47475656 47475674 CTGATTCCAGAAGCCAGGA 59 47475721 47476803 GTTCTCTGGGATCCCTTCTG 60 NA Rattus norvegicus 81 Ctps1 ENSRNOG00000009963 ENSRNOT00000013899 2 1 1 80 5 139493730 139493750 ATGCTCAAATCCTCTTGACAC 59 139490351 139493688 ACGCAGATCACTTGTTCAG 58 NA Rattus norvegicus 81 Ctps1 ENSRNOG00000009963 ENSRNOT00000013899 3 1 1 80 5 139497873 139497891 GAGTGGGTGATGAGACAGG 60 139497189 139497830 GCCACCAAGCTCAATAACAC 60 NA Rattus norvegicus 81 Rps3 ENSRNOG00000017418 ENSRNOT00000023935 1 1 1 80 1 164440110 164440129 GCTACTCTGGAGTTGAAGTC 58 164439837 164440069 CAAGAACATTCTGTGTTCTGG 58 NA Rattus norvegicus 81 Lifr ENSRNOG00000011696 ENSRNOT00000016036 1 1 1 80 2 56474704 56475248 ATCTACTGGAAGCCTTTACCC 59 56475290 56475308 CTCCTCGCTTGATGAACAG 58 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 1 2 2 80 1 187828913 187830722 GATTTCACTACCATCAAGTCAC 57 187828854 187828873 TGGCAATAATTCCAACTGCT 58 NA Rattus norvegicus 81 Ercc4 ENSRNOG00000048121 ENSRNOT00000004563 3 1 1 83 10 2023254 2024276 GGTCAGAATTCAGGTTGGC 59 2023189 2023208 ATCTGGGACACGGTAAACTC 60 NA Rattus norvegicus 81 Med4 ENSRNOG00000017170 ENSRNOT00000023195 1 1 1 80 15 55413932 55415460 GACTTGGGTTCCAGGAGAC 60 55415504 55415522 TTGTTCATCTGACCCAGCA 59 NA Rattus norvegicus 81 Trap1a ENSRNOG00000037610 ENSRNOT00000057044 2 1 1 80 X 110512348 110512367 ATCAGAAGATGAGATGGGCA 59 110512405 110516799 CCTGGAGAATATGAATAGGTACCT 59 NA Rattus norvegicus 81 Tas2r116 ENSRNOG00000021366 ENSRNOT00000028970 1 1 1 60 4 167144896 167144918 GGTTAGTATTAGTGAGTTGGTGG 59 167144858 167144877 CCTTCAGTCATCCATTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr124 ENSRNOG00000016018 ENSRNOT00000021429 2 1 1 60 1 168853083 168853104 CATCCATCATGCCTATTGTGAG 59 168853044 168853063 CTGAGTGTTACCACTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emc1 ENSRNOG00000018097 ENSRNOT00000068168 2 1 1 80 5 157841280 157841298 TGGAGCAATCCTTTCCCTC 59 157841339 157842437 TTCTCTTCTCTGCTTTGTTCTG 59 NA Rattus norvegicus 81 LOC500354 ENSRNOG00000027979 ENSRNOT00000032568 1 1 1 60 4 170820741 170820761 TCACCATGAAGACTCAGATCC 59 170820782 170820801 AAGTCCTTAATGCAGCTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem17 ENSRNOG00000009220 ENSRNOT00000012224 2 1 1 81 14 107306336 107306490 TGCACCTGAAGTATTCGGT 59 107306533 107306553 GCCTCAATCAAGGTTATGAGG 59 NA Rattus norvegicus 81 Ppp1r13l ENSRNOG00000025350 ENSRNOT00000047105 2 1 1 80 1 80279984 80281259 GAGTTCCCTCTAGGATGTCC 59 80281300 80281320 CTATCTTCTGTAGGGACCCTC 59 NA Rattus norvegicus 81 Rhpn2 ENSRNOG00000011885 ENSRNOT00000016148 1 1 1 80 1 91648099 91649185 TTCTTTCAGAAGCTGGGTC 57 91649228 91649247 TACTCTGAAGTGAATGCCTC 57 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 1 1 1 94 8 67219142 67232101 CTTTCTGGCGTATCCAACC 59 67219066 67219087 GAACACTCATTATGAGGTTCTG 57 NA DesignNoJunction Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000034987,ENSRNOT00000082688 2 2 2 80 15 87761959 87761977 CTTCACCCTCCACTACCTC 59 87762021 87764199 GTGCATCTGCCTATGACTC 58 NA Rattus norvegicus 81 Kcnc1 ENSRNOG00000055401 ENSRNOT00000089488 1 1 1 80 1 102445950 102445969 ACACCACAGTACTCAGAGTG 59 102446010 102453184 TTCAGTTTGGAATCTGCTCTG 59 NA Rattus norvegicus 81 Kcnc1 ENSRNOG00000055401 ENSRNOT00000089488 2 1 1 80 1 102445949 102445967 CACACCACAGTACTCAGAG 57 102446010 102453183 TCAGTTTGGAATCTGCTCTG 58 NA Rattus norvegicus 81 Vom2r41 ENSRNOG00000028804 ENSRNOT00000041780 1 1 1 80 1 149440118 149441409 TTCAAATGCTTTACTTCGGGC 60 149440058 149440082 TAGGAGTCATCTGATAAAGATACGG 60 NA Rattus norvegicus 81 Polr3k ENSRNOG00000017843 ENSRNOT00000024096 3 1 1 94 3 177376274 177378315 TCTACTGCAGAGCCATGTC 59 177378373 177378391 TAGAAGGTGGTCATTGGCT 58 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494,ENSRNOT00000080824 2 2 2 80 7 31818603 31819393 CTTGGTGAGGAGAACACCT 59 31818541 31818561 AATGTCAGCAAAGAACTCAGC 60 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494,ENSRNOT00000080824 3 2 2 80 7 31816924 31817025 CTTTAGAGGTGTATGGAAGGG 58 31816864 31816883 TCATAGATGAACCACTGCAG 57 NA Rattus norvegicus 81 Vpreb3 ENSRNOG00000028394 ENSRNOT00000032290 1 1 1 60 20 13657915 13657933 CTGGTTACCGACCTTTCCT 59 13657075 13657093 CTCAGTTGAGCTTCTTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910,ENSRNOT00000081951,ENSRNOT00000066474 2 3 3 82 10 75094269 75094287 TGAATCCTCGCTGGAATGG 60 75094331 75095255 TCGGTATGTGATGATCTGGAC 60 NA Rattus norvegicus 81 Pcyt1b ENSRNOG00000012358 ENSRNOT00000016669 2 1 1 83 X 62779916 62783706 AGGAACTCCAGTTGACAGG 59 62783753 62783771 ATAAGTGCCCTTGCATGAC 58 NA Rattus norvegicus 81 Lypd8 ENSRNOG00000026844 ENSRNOT00000032816 2 1 1 87 10 43823475 43823493 GTGCGCGTATTTGATAACC 58 43823543 43825623 TTTCAGGTTCATAGTGGGTG 58 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845,ENSRNOT00000031328 3 2 2 81 3 177229381 177229482 AAGTGGAAGATGAAGAGATCG 58 177229525 177229543 ATGCAGATGGCGAATACAG 58 NA Rattus norvegicus 81 Olr29 ENSRNOG00000056144 ENSRNOT00000081156 1 1 1 60 1 150210022 150210040 ATTGCCATCTGCTCTCCTC 60 150209980 150210002 TCAGTACACAGTTACCACTACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkmt ENSRNOG00000030629 ENSRNOT00000048550 1 1 1 80 6 8672769 8672789 GTTGCTATTTCTGCAGATGTC 58 8672828 8680624 GATGATGCTGTTCACATTTCTG 58 NA Rattus norvegicus 81 Gtf2f2 ENSRNOG00000029316 ENSRNOT00000044254 2 1 1 80 15 58052592 58065689 GAGGATTGCCAAGAATCAAGG 59 58051415 58051437 CCACCGATATCATGAATATTCGC 60 NA Rattus norvegicus 81 Fam103a1 ENSRNOG00000019426 ENSRNOT00000026385 1 1 1 97 1 143588310 143588328 TACTTGAAACGCCCTCCTG 60 143588389 143589064 TTATCTTGCAGCCAGTTGC 59 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 3 2 2 80 17 54035548 54036079 ATCTACACTGTTCAGGAAGGC 60 54035488 54035510 ATCCCGTATGTGATCTACAAGTC 60 NA Rattus norvegicus 81 Mri1 ENSRNOG00000026211 ENSRNOT00000003762 1 1 1 106 19 25365116 25365134 CTCCTAGAGCAGACCAACC 59 25363034 25365046 CGGATCACACCTAATGCTG 58 NA Rattus norvegicus 81 Zfp385d ENSRNOG00000014661 ENSRNOT00000038449 2 1 1 81 15 6233104 6233122 AAGAGGCTGCTTTACTGCT 59 6203762 6233061 GCTTAGTACCACTGTTGTGAG 59 NA Rattus norvegicus 81 Pramef12 ENSRNOG00000037035 ENSRNOT00000048232 3 1 1 80 5 162385400 162385419 CCTGGATGTCTTACAAACCA 58 162385461 162385966 CGAAGTCGGTAATTACTGGG 58 NA Rattus norvegicus 81 Dusp10 ENSRNOG00000004003 ENSRNOT00000005400 3 1 1 90 13 104315506 104320104 ATTCATTGAGGAAGCTCATCAG 59 104320155 104320173 GTAGGCGATGACAATGGTG 59 NA Rattus norvegicus 81 Slc37a1 ENSRNOG00000001169 ENSRNOT00000001544 2 1 1 80 20 10044056 10044074 TTTATGCTGACGTTCCTGC 59 10044116 10052428 CTTATGTAGCTCACCCTTCAC 58 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243,ENSRNOT00000013400 1 3 3 80 3 57852884 57852905 TGATTAGCATCTCTACTGATGG 57 57852946 57853274 CCAACTCCATGCTATCCTG 58 NA Rattus norvegicus 81 LOC690251 ENSRNOG00000048136 ENSRNOT00000075655 1 1 1 80 11 72897645 72897665 CAGAATTGGTTGAATGACCAG 58 72897891 72901974 GAAGAAGTGGACCTTGTCG 58 NA Rattus norvegicus 81 Rptor ENSRNOG00000003821 ENSRNOT00000005337 2 1 1 80 10 109034816 109034835 ATTTGTGCCACTATGCAGAC 59 109034876 109043956 CTCTTCAGGGATCTTCATGAC 58 NA Rattus norvegicus 81 Ube2z ENSRNOG00000006868 ENSRNOT00000055500 1 1 1 80 10 83881323 83881344 TCTTCTGTGCTTATCTCCATCC 60 83879148 83881284 ATGTCTTTCCTGTTCAAAGCC 59 NA Rattus norvegicus 81 Napa ENSRNOG00000001494 ENSRNOT00000002044 1 1 1 80 1 78009153 78009809 ACATCTATGAGCAGGTGGG 59 78009853 78009871 CCGCCTTGAAGAAGTAGTC 58 NA Rattus norvegicus 81 Adam30 ENSRNOG00000019044 ENSRNOT00000025733 1 1 1 60 2 200329168 200329190 CCTGAGTAGATATGTGTTTACCC 58 200329210 200329228 GAGAATGGCGTCCTCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 2 2 2 92 8 111213742 111213761 TGTAATGGCTCAGGAGACTG 59 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 Gan ENSRNOG00000012671 ENSRNOT00000016963 2 1 1 80 19 49731320 49732799 ATGGTTAGGAAGATTGGCTG 58 49732842 49732860 GAACAGCTTCCCATAGGAG 57 NA Rattus norvegicus 81 Ubap1l ENSRNOG00000050979 ENSRNOT00000072939 3 1 1 84 8 70887128 70889641 TACAGTAGCTTCCCTCAGC 59 70889689 70889707 AGGATGCAGTCTACAGGAG 58 NA Rattus norvegicus 81 Cep97 ENSRNOG00000001609 ENSRNOT00000002191 3 1 1 80 11 47161689 47162419 TGAGCAAACAGAGGTTTCAC 59 47162460 47162480 TTTCAACAGCAGCAATAGGAG 59 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 1 2 2 80 15 4923227 4923247 TATCCCAGCAAATTTCACAGC 59 4921852 4923185 CTGGAGGATGTCACGACTG 60 NA Rattus norvegicus 81 RGD1560580 ENSRNOG00000029974 ENSRNOT00000048690 1 1 1 60 12 34651971 34651990 CATTCCAGAGACTCCTCCAG 59 34652011 34652031 ACCTGTTAAGATGTTGCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1b ENSRNOG00000011552 ENSRNOT00000065508 3 1 1 134 19 45942584 45942934 AGTTTACCAGTCCTGAGCT 58 45943032 45943050 CAGCCACGTGGTAAATGAG 59 NA Rattus norvegicus 81 RGD1562699 ENSRNOG00000042716 ENSRNOT00000065939 3 1 1 88 18 59818605 59819021 CATCCCTTCCTGGAGAGTC 59 59818535 59818555 GTAATCGTGTAATCGCAGAGC 60 NA Rattus norvegicus 81 Gemin5 ENSRNOG00000002645 ENSRNOT00000044299 2 1 1 80 10 43598250 43598993 CCGTTTCGAGTTGTAGGAG 58 43598188 43598207 GTATTGTCCAGGGTGATGAG 58 NA Rattus norvegicus 81 Olr774 ENSRNOG00000046079 ENSRNOT00000046265 2 1 1 60 3 102995918 102995936 TGTAAGCCTCTGCACTACC 59 102995876 102995895 CAGCCAGAAACAAAGTACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr1a ENSRNOG00000019725 ENSRNOT00000026792 1 1 1 80 1 266128179 266129287 GCTTAGCCTTTATGCCACAG 59 266128118 266128136 TAAATCGGGACTGCATGGG 60 NA Rattus norvegicus 81 Pgpep1 ENSRNOG00000019639 ENSRNOT00000026597 1 1 1 104 16 20529831 20530220 ATGCTGGCAGATACCTGTG 60 20530288 20530306 CATTGTAAGGCTTGCCCAG 59 NA Rattus norvegicus 81 Wwox ENSRNOG00000012030 ENSRNOT00000058779 3 1 1 86 19 46770872 46770890 CCATGGAGATACTGCAGGG 60 46770937 46771473 CGACTAGGAAGGTTCCTATTCC 60 NA Rattus norvegicus 81 LOC100910164 ENSRNOG00000011225 ENSRNOT00000014916 2 1 1 80 18 38848165 38848186 GTATTTCAGCGAGAACTACACC 59 38848223 38852816 GCATAAGAATACCCTAACTTGGG 59 NA Rattus norvegicus 81 Fancl ENSRNOG00000027249 ENSRNOT00000029513 2 1 1 80 14 110734471 110734489 TGAGAAGACTTGGGTGCTG 60 110734532 110736568 GAGACATCATGCCCTAATGC 59 NA Rattus norvegicus 81 Igflr1 ENSRNOG00000020957 ENSRNOT00000028442 2 1 1 80 1 89020578 89020599 TCTGGAACTCTAACAAGAGGTG 60 89020640 89021000 CCGCAAACTCGTAATCAGG 59 NA Rattus norvegicus 81 Six2 ENSRNOG00000058827 ENSRNOT00000079027 3 1 1 188 6 8955492 8955510 CAGCTACTGCTTCAAGGAG 58 8953330 8955340 CTGTTCTCCCTTTCCTTGG 58 NA Rattus norvegicus 81 Ccdc166 ENSRNOG00000047521 ENSRNOT00000073835 1 1 1 125 7 117040919 117041040 CCTACAAGGAGTTGCAGCT 60 117040812 117040831 ACTTATCATCCAGGAAGCGT 59 NA Rattus norvegicus 81 Ovca2 ENSRNOG00000003111 ENSRNOT00000004150 2 1 1 182 10 62020419 62020437 CTTCCGTGAGAAGACTGGG 60 62020027 62020045 ACGTCTGCTTCCTCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Men1 ENSRNOG00000021054 ENSRNOT00000028592 3 1 1 80 1 221705331 221706190 TCATCACAGGCACTAAACTG 58 221706232 221706251 CATCTCTGAGACCTAGAGCC 59 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 2 2 2 80 17 27433731 27433752 GATGTGGACATAATGATGAGGT 58 27432372 27433696 GACAGTCTGGTATAGAATATTGTCC 59 NA Rattus norvegicus 81 Itfg1 ENSRNOG00000015843 ENSRNOT00000021711 2 1 1 80 19 22378061 22381998 TCCTCGTAAGATAACACCCT 58 22382038 22382059 AGATACCCATTTGCATCTACTG 58 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261,ENSRNOT00000031173 2 2 2 75 1 84639145 84640102 GTGGGTCAGTGACATTTAGG 58 84640140 84640158 TTCTGAGTAGCATCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Chrdl1 ENSRNOG00000004330 ENSRNOT00000006008 3 1 1 80 X 114632995 114633013 GAAATGGCATCCCTACCTG 58 114630678 114632952 CAAAGCACATTCCCATTCTC 58 NA Rattus norvegicus 81 Ino80d ENSRNOG00000024272 ENSRNOT00000035879 1 1 1 80 9 69854168 69859859 GTTTCCTCACTTAGGGCTG 58 69854106 69854124 ACCTGATATGGTGAAGCCT 58 NA Rattus norvegicus 81 Slc38a10 ENSRNOG00000004604 ENSRNOT00000006225 3 1 1 80 10 109322967 109322987 CTGCATTACCTTCTATGTCGT 58 109321286 109322926 GTCCTGGTTACCTGTAATCC 57 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000075235 2 1 2 61 1 212872544 212872565 CCTGTCATTTATTCTCTGAGGA 57 212872584 212873293 CAGACAAATAACTTTCTGAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Dda1 ENSRNOG00000039417 ENSRNOT00000060404 1 1 1 103 16 19881160 19881179 CAACTTCAGCAGATTCCACG 60 19881321 19883091 TCACGATGATCTGCTCTGAC 60 NA Rattus norvegicus 81 Zbtb39 ENSRNOG00000004306 ENSRNOT00000005685 2 1 1 65 7 71036612 71038298 GGATTGACCTTGCTGATACTG 59 71038325 71038343 AGTTTGATCCTCATGCCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pno1 ENSRNOG00000005524 ENSRNOT00000007824 1 1 1 80 14 100365539 100365558 GAAAGTTCACATTCTGGGCT 59 100364968 100365497 GGAGGGTTTCCTAGGATGAG 59 NA Rattus norvegicus 81 LOC680217 ENSRNOG00000022941 ENSRNOT00000035257 2 1 1 60 1 154132158 154132177 GTGACTTCTTGGAAAGCCAC 60 154132199 154132218 TTGCCCATCTTCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nedd1 ENSRNOG00000004011 ENSRNOT00000005463 3 1 1 80 7 33574822 33574842 GTGGAGGCCTAAATAACACTG 59 33571954 33574782 CCCGTTTATGGTCCTTAAGAG 58 NA Rattus norvegicus 81 LOC102552166 ENSRNOG00000049489 ENSRNOT00000074641 1 1 1 80 8 114193005 114193238 GTTACATATGAATGGGCCAAGG 60 114192946 114192967 AAGAAGTACCATCTTGGGAGAG 59 NA Rattus norvegicus 81 Lypd5 ENSRNOG00000019432 ENSRNOT00000026288 3 1 1 122 1 81212598 81212616 TATGCCTGCTTAGGGACTC 59 81212702 81213082 CGAGAAGTTGCCAATGGTC 59 NA Rattus norvegicus 81 AABR07055532.1 ENSRNOG00000032529 ENSRNOT00000045741 2 1 1 80 7 5423746 5423767 CATCTACATCAAACCTTCAGCA 59 5423807 5423827 AATGGGTTCAAGGAAGTGGT 60 NA Rattus norvegicus 81 Traf4 ENSRNOG00000013169 ENSRNOT00000018468 1 1 1 107 10 65421733 65424590 AGTTCCTCAGTGAAGGAGTC 59 65420870 65420888 TAGCCAAGCCTAACACCTG 59 NA Rattus norvegicus 81 Traf2 ENSRNOG00000006238 ENSRNOT00000008253 3 1 1 81 3 2750783 2751154 CTAAGCAACAAGGTGCAGC 60 2750720 2750738 CTGAGACCTTCTGCTCCAG 60 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 3 1 1 116 9 82054304 82054322 CTGTTCTTCCTACTGCTGC 58 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 2 2 2 80 6 107642172 107642835 ACCTATCACTACACAGGCTC 59 107642111 107642132 TTTCTTATAGATGGCAATGCCC 59 NA Rattus norvegicus 81 Snrpf ENSRNOG00000005556 ENSRNOT00000007351 3 1 1 88 7 34483365 34483385 TGATGGTGAAACTTAAGTGGG 58 34479358 34483316 TTCTGTATTTGCAAGCTGCA 59 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644,ENSRNOT00000083956 2 2 3 80 7 143322675 143323067 CAGACCAAGTACGAGGAGC 60 143322613 143322633 CTCTGAGATCTCATGCTTGGT 60 NA Rattus norvegicus 81 Acot2 ENSRNOG00000010134 ENSRNOT00000013515 3 1 1 74 6 107463729 107463747 AGAAGCCGTGAACTACCTG 59 107466076 107466095 CCTTTGGAAATCCCAAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857,ENSRNOT00000065893 2 3 3 100 12 52360966 52361846 GACATTCCAACACTTCAAACTC 58 52362006 52362024 TGTCCGGTATGGATCAGAC 59 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 2 2 2 81 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886901 151886919 ATCCTGAAGCAGGTAAGCT 58 NA Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 3 1 1 119 3 8657206 8657224 CCCTGGATGGAGAACTGTG 60 8657000 8657124 GAAGAACTGGAGACCAGACC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07002774.1 ENSRNOG00000029805 ENSRNOT00000063839 3 1 1 80 1 84686084 84686106 CCTTACTAGAGCAGGAGAAAGAG 60 84686146 84696361 AACCTGTCTCCAACTCTGG 59 NA InUTR Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 2 2 2 84 10 104997968 104997988 GAACACCATTTCCCTATCACC 59 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 RGD1564792 ENSRNOG00000040214 ENSRNOT00000061894 1 1 1 64 4 8256686 8256704 GATGACGGTGATCGTTGTC 59 8256732 8256750 CTTGAGACTTCCTTCGGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txlnb ENSRNOG00000060021 ENSRNOT00000089066 2 1 1 80 1 12944367 12944385 ATGCGAAACTTGAAGAGGC 59 12944425 12948891 GGTTCAGCAAATATTCCTTCTCC 60 NA Rattus norvegicus 81 LOC300249 ENSRNOG00000009614 ENSRNOT00000012738 1 1 1 60 7 143444165 143444186 TCAAGAGTAACTACAACCTCCC 59 143444205 143444225 AAGATTCTGCTAAGGTCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc3 ENSRNOG00000001088 ENSRNOT00000001444 3 1 1 80 12 1461711 1463264 GCATCAGACTATCACAACTCC 59 1463306 1463324 GGGTTAACCTCAAGGTGGT 59 NA Rattus norvegicus 81 Sp6 ENSRNOG00000023551 ENSRNOT00000038572 1 1 1 63 10 84958322 84958340 TCACAGGGCTATGAGTTGC 60 84958367 84958385 TGTCACTTTCCAGGTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049887.1 ENSRNOG00000047686 ENSRNOT00000074492 1 1 1 60 5 142646171 142646192 GGGAACCATGTAAATATGTGAG 57 142646213 142646231 GCACAAAGTGTTTCTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 3 1 1 60 7 15482987 15483374 AAGGTTAAGTTTCCATACCGG 58 15482947 15482965 GAGGCTGCTGTAATTGGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chrm4 ENSRNOG00000017556 ENSRNOT00000023583 2 1 1 97 3 80833394 80833412 GAGAAAGACAGAAGCAGCG 59 80838455 80838473 CAGACTGATTGGCTGAGCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chrm4 ENSRNOG00000017556 ENSRNOT00000023583 3 1 1 98 3 80833392 80833411 CAGAGAAAGACAGAAGCAGC 59 80838454 80838472 AGACTGATTGGCTGAGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chp1 ENSRNOG00000004742 ENSRNOT00000056405 3 1 1 80 3 111371569 111371588 CAGAGGATTCCAGAACTTGC 59 111371630 111376171 TACCTGATCCTCTCCCTCTG 60 NA Rattus norvegicus 81 Sez6l2 ENSRNOG00000027098 ENSRNOT00000037405 2 1 1 80 1 198386947 198391296 ACTATCAGGCATACCTTCTGAG 59 198391337 198391355 CAGGATGCAAGTCTGTCAC 59 NA Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 1 2 2 80 3 95313045 95397388 TACCTGCTGAGGTACTGTG 58 95397432 95397450 TTTGCACTGATTGGTCACC 59 NA Rattus norvegicus 81 Procr ENSRNOG00000019330 ENSRNOT00000055254 1 1 1 80 3 151287554 151287573 TGAAGATCTACCTGTCCCAG 58 151287616 151288429 TCAGAGGAAAGACCACGTC 59 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095,ENSRNOT00000059073 1 2 2 80 6 108011400 108011421 GTTTACCGGATACTATCAACGA 58 108011462 108013977 TCTTACAGCGCATGTAAGG 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095,ENSRNOT00000059073 2 2 2 80 6 108011402 108011424 TTACCGGATACTATCAACGAAGG 60 108011462 108013979 CATCTTACAGCGCATGTAAGG 60 NA Rattus norvegicus 81 Prrx2 ENSRNOG00000058329 ENSRNOT00000083251 2 1 1 103 3 9715231 9715249 CTGGAGCGTGTATTTGAGC 59 9715316 9716215 TGGAACCAGACTTGGACAC 60 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121,ENSRNOT00000083127 1 2 2 80 4 130403292 130414382 ATCACAACTTGATTGAACGGAG 59 130414420 130414441 TTGACTTGGGAATCAAAGTACC 59 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498,ENSRNOT00000002645 3 2 2 80 11 77486703 77490123 TGAGAAGGAACCAGGAGAG 58 77486641 77486661 CAGATCTCATTGTGAGAGTCC 58 NA Rattus norvegicus 81 Gdf1 ENSRNOG00000020142 ENSRNOT00000027275 1 1 1 80 16 20853191 20853320 CTACTGGTTCCTGTACATTGTG 59 20853132 20853150 TATTCCCGCAAGTCTTCCA 59 NA InUTR Rattus norvegicus 81 RGD1562515 ENSRNOG00000024604 ENSRNOT00000007636 1 1 1 60 4 101393030 101393048 ATGCTTCCTCTCGTTTCCC 60 101392988 101393009 TGGAATTACTATCCTTTGCGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uvrag ENSRNOG00000016206 ENSRNOT00000022176 1 1 1 80 1 164025597 164046117 TCCATTTGAACACAAGGCTC 59 164025536 164025556 TCATAGGAATTGCGAACACAG 59 NA Rattus norvegicus 81 Psmb3 ENSRNOG00000052730 ENSRNOT00000086608 1 1 1 80 10 85650774 85651108 TATGAGAAACGGTTTGGTCC 58 85651150 85651169 GCAAATGAAGGGCTTAAAGG 58 NA Rattus norvegicus 81 LOC683884 ENSRNOG00000018129 ENSRNOT00000024471 1 1 1 81 1 192046267 192048692 GTGTATGACTAAAGTATCAGATGCC 60 192046210 192046229 GTGGTTCACTCTTGCTTGTC 60 NA InUTR Rattus norvegicus 81 Nipal2 ENSRNOG00000005190 ENSRNOT00000006943 2 1 1 80 7 73417171 73449641 CACAGAAACCAGATTCACCT 58 73417110 73417131 CTGGATATTTAGGGAAATGCTG 57 NA Rattus norvegicus 81 Cln5 ENSRNOG00000055439 ENSRNOT00000077597 2 1 1 80 2 66607375 66607397 TGGTTTCTACCTATGAAACCC 57 66601158 66601178 GGTAAATATCGTATGTCGGGT 58 NA Rattus norvegicus 81 Cmbl ENSRNOG00000011260 ENSRNOT00000015448 3 1 1 88 2 84658605 84661050 GGATACACAACTATTGTCCCAG 59 84661099 84661117 TTCAACCACTCAGGGAAGG 59 NA Rattus norvegicus 81 Atp5b ENSRNOG00000002840 ENSRNOT00000003965 2 1 1 80 7 2505867 2506152 AACCAAACAATTCGCTCCT 58 2506195 2506214 CCAGTCACCAGAATTTCCTG 59 NA Rattus norvegicus 81 Cyp20a1 ENSRNOG00000017631 ENSRNOT00000023796 3 1 1 80 9 67178839 67179001 GTCCAGAACTGAGGTTTGC 59 67179044 67179063 CTACAGCAAGCAGATGTAGC 59 NA Rattus norvegicus 81 Chfr ENSRNOG00000037430 ENSRNOT00000056639 1 1 1 80 12 52581022 52581040 AACCAGACAAGATGGAGGA 58 52580306 52580978 TACAAGGCTGCAAACTCAC 58 NA Rattus norvegicus 81 Chfr ENSRNOG00000037430 ENSRNOT00000056639 2 1 1 80 12 52581021 52581040 AACCAGACAAGATGGAGGAG 59 52580306 52580978 TACAAGGCTGCAAACTCAC 58 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 3 2 2 110 17 31494557 31494575 TGATAAGCGATGAGCATGG 58 31494649 31494917 CATATTTGTTGCCAGCAGC 58 NA Rattus norvegicus 81 Tollip ENSRNOG00000019861 ENSRNOT00000046344 3 1 1 80 1 214833642 214833660 AGTGGTATAGCCTGAGTGG 58 214832427 214833599 CTGGAAGGGACGTATAGGAC 59 NA Rattus norvegicus 81 Serpinb6 ENSRNOG00000017962 ENSRNOT00000024161 2 1 1 80 17 32204402 32204421 ACTTCAAAGGAAACTGGGAC 58 32204464 32208637 TCTCCTCAGTCTTGCTGAC 59 NA Rattus norvegicus 81 Prune ENSRNOG00000021120 ENSRNOT00000028677 1 1 1 80 2 196438216 196439892 ATATGTTACCCAAGAGCGAC 58 196438155 196438174 AGTATTTCTGCTCGATTGGT 57 NA Rattus norvegicus 81 RGD1305733 ENSRNOG00000003198 ENSRNOT00000004346 2 1 1 80 10 3471115 3541686 CAGAACTCAGGTTCATGATGG 59 3541726 3541746 CTACCAAGTTCTGAAGCTCCT 60 NA Rattus norvegicus 81 Rps14 ENSRNOG00000018774 ENSRNOT00000059501 1 1 1 80 18 56044505 56045235 ATCTTTCTGGCAAGGAAACC 59 56045276 56045296 CATACGGAGAGGACTCATCTC 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000079524,ENSRNOT00000085650 3 3 3 80 7 104672315 104672336 ATGAGCTCACATTTATTGAGGG 59 104670135 104672275 CTTCGATATGCCCAATCCAC 59 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000050349 ENSRNOT00000072764 1 1 1 80 17 33040192 33041662 GCCAGAAGATACAAGCCCA 60 33041703 33041724 ATAGTTCACAACTTCAGGAGCA 60 NA Rattus norvegicus 81 Ergic1 ENSRNOG00000003508 ENSRNOT00000005273 2 1 1 80 10 16848361 16852360 AATTTGCACTGTGAACTGGTC 60 16848301 16848322 CATGGAGTTGTCAATATGACCC 59 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942 3 1 2 170 8 50530865 50531439 CTAGCTACTCCAGGTGCAC 60 50530594 50530612 TGCTTAGTGCATCCTGGAC 60 NA InUTR Rattus norvegicus 81 Olr183 ENSRNOG00000027423 ENSRNOT00000037868 1 1 1 60 1 169892582 169892602 ACTTGGCATATTCTGGTTTGG 59 169892542 169892562 CATTTGAGCTATACAGTCCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hhex ENSRNOG00000016595 ENSRNOT00000022384 2 1 1 88 1 256104469 256104487 CCAAGATGTTGCAGCTCAG 59 256104729 256106593 AGGATTCTCCTGCTTCAGTC 59 NA Rattus norvegicus 81 Tmem67 ENSRNOG00000016187 ENSRNOT00000021839 2 1 1 80 5 25700256 25700274 TTGTTGCTGCTTCCTACGA 60 25699712 25700214 CTGGACAAAGCTGTAGAACAC 59 NA Rattus norvegicus 81 Vom1r88 ENSRNOG00000031987 ENSRNOT00000040163 3 1 1 60 4 88423681 88423699 TATCTGTGTCACCTGCCTG 59 88423720 88423741 AGAGTTATTCGGACTGATAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_1003.1 ENSRNOG00000052876 ENSRNOT00000078236 3 1 1 60 14 100260358 100260377 CTTCATGTGCTGTCTTCTGC 60 100260317 100260336 CTTCTTGTAGCTCTCCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 2 1 1 60 2 190073922 190073941 TCTACAGGGATGACTTCAGG 58 190073962 190074145 TTATTCTGCACAAACTGAGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 3 2 2 60 14 107393319 107393338 CACCTTTGACAAACACGGAG 60 107393359 107393379 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r79 ENSRNOG00000057572 ENSRNOT00000089498 1 1 1 60 4 87982085 87982104 AGACTATCTTGCTGCTTGTG 58 87982044 87982062 GAGATGATGAAGTCCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faxdc2 ENSRNOG00000027259 ENSRNOT00000036481 1 1 1 80 10 43509120 43512016 CATTATAGGTGTTGTCCTCGTG 59 43509061 43509079 TTTCCTGTTCTGTCCACCA 59 NA Rattus norvegicus 81 RT1-P2-ps1 ENSRNOG00000053315 ENSRNOT00000078926 1 1 1 60 20 2542934 2542955 TTACATCGCCATAAACGAAGAC 59 2542895 2542913 TATCTGTGCTGCAGTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox6c ENSRNOG00000010807 ENSRNOT00000014407 3 1 1 111 7 74731392 74734382 CCTATAAGTTTGGCGTGGC 59 74731299 74731317 CTCTGAAAGACACCAGCCT 59 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536,ENSRNOT00000025270 1 2 3 119 18 47630898 47630916 CCATGAGCCACAATGTCTG 59 47630999 47633963 TCGTAGAATCCTTTGGCGG 60 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000025273 1 1 3 80 18 47594175 47605741 TCATGAGCCATCTTGGAGAC 60 47605784 47605802 TCAGAGCTTCGTTGGAGAG 59 NA InUTR Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000025273 2 1 3 82 18 47594173 47605739 CTTCATGAGCCATCTTGGAG 59 47605784 47605802 TCAGAGCTTCGTTGGAGAG 59 NA InUTR Rattus norvegicus 81 Abce1 ENSRNOG00000018345 ENSRNOT00000024753 2 1 1 80 19 31888833 31888854 ATTTAATTGACGAGCCATCTGC 60 31888893 31889016 GGAGAATGAAACGTTTGACGA 59 NA Rattus norvegicus 81 Lair1 ENSRNOG00000027733 ENSRNOT00000036413 3 1 1 80 1 73837982 73838001 TTCATTCTGTCATCGTGCTG 59 73839808 73860080 TGAAATCGGACAGAGATTCCT 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038,ENSRNOT00000006492 1 3 3 80 6 108869525 108869546 GGATCGTGTTCTTGACTATGAG 59 108869585 108870225 TCACGGTATGATTGATTCCTG 58 NA Rattus norvegicus 81 LOC100360940 ENSRNOG00000008548 ENSRNOT00000011308 1 1 1 83 5 147607723 147607743 GAATTGATAAGACCATGGCAC 57 147607785 147607842 CTCTGATTTCTGAGCAATAGGA 58 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558,ENSRNOT00000010991 1 3 3 80 8 68089216 68092091 ATCACTCAGTGCATGAGGA 58 68056390 68056408 GAACTGCACGATGAATGGG 59 NA Rattus norvegicus 81 Yars ENSRNOG00000007213 ENSRNOT00000010674 2 1 1 80 5 147381827 147381846 AATGCTGGAGAGTATTGGTG 58 147381889 147385627 GTGTACTCTTTGCTGAGCT 58 NA Rattus norvegicus 81 Ddx27 ENSRNOG00000008081 ENSRNOT00000010806 2 1 1 80 3 163779885 163779905 AGATTATCCGAATGTGTTCCC 58 163779947 163780053 AAGCCAGATCTTTCACCTC 57 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 1 2 2 89 10 45313500 45313618 CTTGACCAGGAAGGAGAGC 60 45313671 45313689 ATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 LOC684179 ENSRNOG00000047148 ENSRNOT00000073158 2 1 1 82 1 167826876 167827058 TCCAATGTTGTTCCTCACTC 58 167827103 167827121 TAGAGACTGCTAGGCATGG 58 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 2 2 2 80 10 94364718 94364739 TCTCCAAACCAGAGATCATGAG 60 94364364 94364678 CAAACCCTTTGCCTATGACG 60 NA Rattus norvegicus 81 LOC685171 ENSRNOG00000058543 ENSRNOT00000084484 3 1 1 60 4 45854783 45854801 TGGAAAGCAGGTCAAAGGT 60 45854824 45854843 GTCATCTGTCAGCTCTACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071,ENSRNOT00000006963 1 2 2 80 3 44434465 44434486 GATATGAGGAAAGTTGTCTGTG 57 44433749 44434425 AGAAGTTAATGTCGGGTCTG 57 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071,ENSRNOT00000006963 2 2 2 80 3 44444443 44444464 TATAAGAGGGTCGATATTTGGG 57 44434538 44444404 TTCCACTATACCATTGCTCAC 58 NA Rattus norvegicus 81 Mlh3 ENSRNOG00000006699 ENSRNOT00000033493 3 1 1 80 6 109069630 109071546 GACTCTTACGGTCTTACCAC 58 109069569 109069587 GGATCGAAGAGTCACTAGC 57 NA Rattus norvegicus 81 Kif26b ENSRNOG00000028624 ENSRNOT00000017784 1 1 1 80 13 96778954 96778972 CTGATGAAAGAGCTGGAGG 58 96776115 96778912 CTGTTCCAAGTCAAATTCACG 58 NA Rattus norvegicus 81 LOC100363368 ENSRNOG00000024504 ENSRNOT00000036754 3 1 1 86 15 18920486 18921935 AAGGAACAGAACTGCACTG 58 18921984 18922003 TTAACGTTGCAGTTCCTCTC 58 NA Rattus norvegicus 81 Mir146b ENSRNOG00000040448 ENSRNOT00000062201 3 1 1 62 1 266089498 266089516 GCCCTGAGAACTGAATTCC 58 266089542 266089560 CCAGAACTGAGTCCCTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smurf2 ENSRNOG00000014623 ENSRNOT00000019781 3 1 1 80 10 95029124 95029143 TGAACTCAAACCAAATGGCA 59 95026618 95029083 CTCCAGTTTACGTAAAGCCTG 59 NA Rattus norvegicus 81 Sf3b4 ENSRNOG00000021181 ENSRNOT00000028758 2 1 1 89 2 198313128 198313146 ATGGGAGCTCTTTCTCCAG 59 198313199 198313661 ACAAAGCCATAGCCTTGGT 60 NA Rattus norvegicus 81 Foxk1 ENSRNOG00000001104 ENSRNOT00000001466 2 1 1 81 12 14185151 14186468 CAATGAGGCTAGAGGTTTGGA 60 14185090 14185108 GACCGTCTGGATAACTCGG 60 NA Rattus norvegicus 81 Arhgef19 ENSRNOG00000047967 ENSRNOT00000067574 1 1 1 80 5 159765653 159765671 CTGCCTCTCACCTCATTCC 60 159765715 159766075 GCGCTTCAAGATGTTCTCC 59 NA Rattus norvegicus 81 Pdcd6 ENSRNOG00000014485 ENSRNOT00000019735 3 1 1 81 1 31587596 31590927 GTCTTGCAGAGGTTGACAG 59 31590971 31590990 GATACTGCTCGTAAGACACC 58 NA Rattus norvegicus 81 Trim11 ENSRNOG00000002915 ENSRNOT00000047268 1 1 1 82 10 45325636 45325654 CTGCGGAAACAAATGGAGG 60 45325700 45326377 CTCTCCACCATCTTCTGCC 60 NA Rattus norvegicus 81 Tomm22 ENSRNOG00000014058 ENSRNOT00000019323 3 1 1 81 7 120901995 120902014 GAAGAATTGGTCCCGAAAGC 60 120902058 120902240 GGGTCTCATCTAGCTCGTC 59 NA Rattus norvegicus 81 Cops3 ENSRNOG00000053943 ENSRNOT00000091471 3 1 1 80 10 46197069 46197087 AGCCATAGACAAGATGCAG 57 46194842 46197026 TTCGCTAGTAAACAGAGCTG 58 NA Rattus norvegicus 81 Rn60_13_0839.1 ENSRNOG00000051042 ENSRNOT00000075889 3 1 1 60 13 78907917 78907937 TGAGTGCATCCAATATCTCCC 60 78907877 78907896 GATTGCAGCATGATCTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076101 3 1 2 80 12 28714375 28714396 GTATGGCTACAATTCCTACCTC 58 28714437 28755488 TCCTTACACTTGGTAGGGC 59 NA Rattus norvegicus 81 Rn60_7_1414.2 ENSRNOG00000059186 ENSRNOT00000088489 3 1 1 84 7 143583118 143583136 ACTCCAGACACATGGAAGG 59 143583183 143583202 CATGTGGATCAAACCTTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr283 ENSRNOG00000030782 ENSRNOT00000043307 3 1 1 60 1 173442776 173442795 TCTTCTCTTTGGTGGGACTG 59 173442735 173442754 AGCAAATCGATCATAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310647 ENSRNOG00000045919 ENSRNOT00000051570 3 1 1 93 17 57814843 57815626 AGGACCAGATTTCCATAAAGGA 59 57814771 57814790 TAGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 3 2 2 70 5 155666653 155666671 AGATCTGGAGAAGTGTGGC 59 155666705 155666810 ATCCTGACCACTGGAAACC 59 NA DesignNoJunction Rattus norvegicus 81 Gip ENSRNOG00000006306 ENSRNOT00000008481 1 1 1 85 10 83844206 83846227 AAGAATGACTGGAAACACAACC 60 83846270 83846291 TCTTTCTCCTCGTTTCTCTGAG 60 NA Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 2 2 2 80 3 111831484 111831503 AAGACAGCTTCTACTGGTCC 59 111831546 111831721 GCTCTTTGTCCAGATTGGC 59 NA Rattus norvegicus 81 Slc46a1 ENSRNOG00000010291 ENSRNOT00000013698 2 1 1 81 10 65735827 65737447 TCATGTTCACAGGGTACGG 59 65737492 65737510 CTCACTAGCTTGGAGAGCT 59 NA Rattus norvegicus 81 AABR07002473.1 ENSRNOG00000046339 ENSRNOT00000012225 2 1 1 82 1 74775019 74777263 TTCAACTGGAGAACTTCTGTC 58 74778241 74778261 GGTCCATAGGAAATCTGAAGG 58 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 3 2 2 80 13 107692265 107733311 GAAGGAAGAGGTGGGAGAG 59 107692203 107692223 CTCCTTGTTTCCTTGAACTCG 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000074230,ENSRNOT00000071067 3 2 3 80 12 24595376 24599715 AATACACGTCTCCAGGCTC 59 24595314 24595334 AGGAAGAAGGAATTCAGAGCT 59 NA Rattus norvegicus 81 Tbrg4 ENSRNOG00000052477 ENSRNOT00000089133 3 1 1 81 14 86877934 86878505 TTCCTAGTGGTGGATGTCC 58 86877871 86877889 TCTTGTCCTTGAGGTAGGC 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000020427,ENSRNOT00000047118 3 3 3 80 16 3537748 3556894 TGTCATCGAAATGAAGGACAC 59 3556933 3556954 TTCAACATCTGGATCTCATCCT 59 NA Rattus norvegicus 81 AC129365.1 ENSRNOG00000061358 ENSRNOT00000088499 1 1 1 80 2 147479554 147479575 TGAGGCTTATGTAAACATGAGG 58 147479612 147479637 CGAATTAATGACTCTAGCTGAGG 59 NA Rattus norvegicus 81 M6pr ENSRNOG00000014992 ENSRNOT00000020364 3 1 1 82 X 88315132 88315151 TTTGAGATGGATAGCAGCCT 59 88314339 88315090 GATGCAAATATGACAAGGAGGA 59 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163,ENSRNOT00000078020 2 2 2 80 3 3388433 3390691 TGAGTGTCTTGGGAAAGGAG 59 3388372 3388391 GACACTTTCTGCTGCTTCTG 60 NA Rattus norvegicus 81 Birc2 ENSRNOG00000010602 ENSRNOT00000014560 2 1 1 80 8 6015205 6015226 CGACTCTACGCTATATGAACAC 59 6014678 6014776 AATGACAAGCCTGAAACGTC 59 NA Rattus norvegicus 81 Krt18 ENSRNOG00000047393 ENSRNOT00000073951 2 1 1 80 7 143632577 143632597 AACATCAAGGTCAAGCTTGAG 59 143632638 143632963 GTCGTTGAGACTGAAATCGT 58 NA Rattus norvegicus 81 Ptprn ENSRNOG00000019587 ENSRNOT00000026654 3 1 1 80 9 82454087 82454349 TATAGTCACTGATCAGAAACCC 57 82454028 82454046 GTCATGTGCACATGTTCAG 57 NA Rattus norvegicus 81 Rfpl4a ENSRNOG00000015743 ENSRNOT00000021077 3 1 1 98 1 72280365 72281627 CTGACTAAATGAGGCACTGAC 59 72281687 72281705 CAGTTCAGGTACACAGGGT 59 NA InUTR Rattus norvegicus 81 LOC686677 ENSRNOG00000046185 ENSRNOT00000071281 2 1 1 60 3 76179817 76179838 TCACTTTCCACTATGAATGCTG 59 76179857 76179877 TGAACACATATGACAGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrcc1 ENSRNOG00000010891 ENSRNOT00000014762 3 1 1 80 2 88413920 88413938 CGGAAATCGAACCAGAGGA 60 88411821 88413878 ACTCTGATATACTGTGCAGGC 60 NA Rattus norvegicus 81 Cgrrf1 ENSRNOG00000010178 ENSRNOT00000013912 3 1 1 80 15 23633418 23633436 CTCGCTATCCATTGGTAGC 58 23633477 23638839 CAGACACCATGGAAATAATGTC 58 NA Rattus norvegicus 81 Slc22a3 ENSRNOG00000022946 ENSRNOT00000037369 1 1 1 80 1 48482851 48483988 TTGCTTTGTGATTGTGACAG 57 48484031 48484049 AGGGTGAAGAACATCTGGA 58 NA Rattus norvegicus 81 Wsb2 ENSRNOG00000001135 ENSRNOT00000001499 3 1 1 80 12 44944404 44945690 GAGAAGTCGGTCTTTCTGTG 58 44944343 44944361 GGAGACAACACTGCTTTGG 59 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933,ENSRNOT00000084640 1 2 2 80 5 117586271 117586291 AAAGAGCCTTAGACTTCACTG 58 117586330 117587373 CAACTTGATCAATCTCAGATCC 57 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 2 2 2 80 8 70624056 70624518 TGATGCCATAAAGAGCAACG 59 70624561 70624579 GAGTGGACAATGACTTCGG 58 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 2 2 2 80 12 12879936 12880165 GGATGAAGTCCATCAAAGCG 59 12879875 12879895 TATTGGCAATCCTCCTCTTCC 60 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762,ENSRNOT00000077544 2 2 2 80 1 245877512 245877533 GTTCTACTTAGTAGAGCACCGT 59 245862397 245877473 TTTAAATCACCAAACTCGCCC 60 NA Rattus norvegicus 81 Rpl22l2 ENSRNOG00000029173 ENSRNOT00000040366 1 1 1 60 3 122285261 122285281 AAGAAGCCTAAGAAGTCAACC 58 122285299 122285321 CATCTTCTACTGGATGAGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp13a1 ENSRNOG00000010776 ENSRNOT00000015247 3 1 1 80 16 21373049 21373069 GGAGACCTTCATCTTCATCCT 59 21372919 21373007 TCCTTGGTCCCTTCAATCC 59 NA Rattus norvegicus 81 Fh ENSRNOG00000003653 ENSRNOT00000004917 1 1 1 80 13 93664905 93664923 TGCTAGGAGGTGAACTTGG 59 93662532 93664861 AGGTGTCATTCGAGCTCTG 60 NA Rattus norvegicus 81 Rnf224 ENSRNOG00000040284 ENSRNOT00000062001 3 1 1 60 3 2456009 2456027 AGGTCTCCACACCTTAGAG 58 2455967 2455986 GATGATGCAGTCATTCCGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr374 ENSRNOG00000030032 ENSRNOT00000049799 1 1 1 60 1 230577031 230577050 CTTTCTCTACCTGCTCCTCC 59 230577072 230577091 AGGCTACAGCATCCATACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap53 ENSRNOG00000014585 ENSRNOT00000019573 2 1 1 80 18 70273811 70274412 AGAGACGAAATAAGCTACGTG 58 70274453 70274472 TGGTTTCTCCTTTCGATTGC 59 NA Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000071707,ENSRNOT00000073435 2 2 2 80 11 82869110 82869369 TGTCTTTGTCATTGGAGCAG 59 82869412 82869430 TCCGTGTGAATCCCATCTG 60 NA Rattus norvegicus 81 Fbxo6 ENSRNOG00000009217 ENSRNOT00000012301 2 1 1 80 5 164959609 164959632 CTGGAAGATCTTCTATATCCTGTG 58 164957650 164959572 CATGATCTCAGGTTCTCTTCG 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000075887,ENSRNOT00000087506 3 2 4 80 13 78196459 78196477 TTCCACATCATTGACCTGC 58 78089879 78148184 CTTTGAGGTCTTTAGAAGAGCC 59 NA Rattus norvegicus 81 Olr551 ENSRNOG00000050825 ENSRNOT00000049273 2 1 1 60 3 74990289 74990309 CTCTAATTTACAGCCTGAGGA 57 74990249 74990269 CTACAAATTGACCTCTTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 3 2 2 82 2 235852556 235852652 AACTAGGCTGTCTCGAACC 59 235852492 235852510 CACATGCGGATTTAGGTGC 60 NA Rattus norvegicus 81 Gpr137c ENSRNOG00000026328 ENSRNOT00000036235 2 1 1 80 15 19613684 19614640 GAAGGAAGCTTATCAAACCCG 59 19614682 19614700 CGTGACTGTGTATGTGCTG 59 NA Rattus norvegicus 81 Vom1r14 ENSRNOG00000052260 ENSRNOT00000092184 1 1 1 60 1 60281076 60281094 GTGTTTCTGTTGCTACCGT 58 60281034 60281052 CTGGGACTGATGGTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC136013.2 ENSRNOG00000058724 ENSRNOT00000090938 3 1 1 139 14 17613995 17615308 GACTGACATTTCATGTATTCCC 57 17613877 17613895 CTTCTTGAAGTGCCTCGAG 58 NA Rattus norvegicus 81 Hoxb9 ENSRNOG00000007573 ENSRNOT00000009951 1 1 1 98 10 84120369 84120387 AGGAAGCGAGGACAAAGAG 59 84123018 84123037 TATTTGGTGTAGGGACAGCG 60 NA DesignNoJunction Rattus norvegicus 81 Chchd4 ENSRNOG00000022466 ENSRNOT00000038096 1 1 1 80 4 123112423 123112442 CCATGAAACTCCTAGCAGTG 58 123109956 123112380 TTAGGCAGTATCAACCCGT 58 NA Rattus norvegicus 81 LOC100909611 ENSRNOG00000032126 ENSRNOT00000044305 3 1 1 60 3 76495745 76495766 ATGGCATCATCAATCACTTTGG 60 76495706 76495728 TCAGAGCAAGATACAGAGATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rchy1 ENSRNOG00000002546 ENSRNOT00000003470 3 1 1 80 14 17621888 17626604 GTGGGATTTGTAGGATTGGTC 59 17626645 17626664 CTCGAAGAGTCATGGCTAGG 60 NA Rattus norvegicus 81 Zfp770 ENSRNOG00000043037 ENSRNOT00000067646 1 1 1 60 3 105661606 105661626 GAGAGTTCAGAGTCCAATCAG 58 105661566 105661586 TAAACTCCTCCGATTCTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971,ENSRNOT00000084970 2 2 2 82 19 37669296 37669316 CACCAATGATGACAGTTTGCA 60 37669360 37669591 AGTCACCTTCCCGTTTCTG 60 NA InUTR Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971,ENSRNOT00000084970 3 2 2 83 19 37669295 37669315 TCACCAATGATGACAGTTTGC 60 37669360 37669591 AGTCACCTTCCCGTTTCTG 60 NA InUTR Rattus norvegicus 81 Olr577 ENSRNOG00000021658 ENSRNOT00000033519 1 1 1 60 3 75733543 75733563 GTCCAAGAAGGTCTGTATCCA 59 75733503 75733522 TGAATCCACCAAGCCTACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Treml2 ENSRNOG00000013554 ENSRNOT00000042404 1 1 1 80 9 14661096 14661115 CTGACATTTCTTCCAGCACC 59 14660825 14661057 CAAGTTGTATCTTCCCATGTGTC 60 NA Rattus norvegicus 81 Actr8 ENSRNOG00000015280 ENSRNOT00000020750 2 1 1 80 16 6052079 6053191 CCTAAGGGAAGGACTAAATAAACC 59 6053230 6053248 GACCATATTGCCTGGTCCA 60 NA Rattus norvegicus 81 Cxxc4 ENSRNOG00000045764 ENSRNOT00000072196 3 1 1 80 2 239415061 239415081 ACTAATTAAAGGCAGACTGGC 58 239415121 239417634 ATCCTCCAACTGTTACAACAG 58 NA InUTR Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 2 2 2 80 Y 152646 153827 GGGCTAAAGCTATGATGAACC 59 153866 153887 TCAACATGTAGCTCAGTAAGTC 58 NA Rattus norvegicus 81 Nnmt ENSRNOG00000005930 ENSRNOT00000007789 1 1 1 94 8 52937681 52937699 ATTACAGCTTTGGGTCCAG 57 52936048 52937623 CTTTACACCATCCAGGCAG 58 NA Rattus norvegicus 81 Rn60_5_1514.1 ENSRNOG00000030173 ENSRNOT00000043325 1 1 1 75 5 147637323 147637341 TCAGAACCAGAGCGATGTC 60 147637379 147637398 TAAACCATTTGCAATCCGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691189 ENSRNOG00000036888 ENSRNOT00000005445 2 1 1 81 10 85714860 85716942 ACTGATCAGGATCATGGTGG 59 85714798 85714817 GGTATCTCTGTCCTTGACCA 59 NA Rattus norvegicus 81 Olr200 ENSRNOG00000048852 ENSRNOT00000048075 3 1 1 60 1 170147480 170147498 CTGCATCAGCCAATGTACC 59 170147520 170147540 TAGCCAAGCCAATATCTACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562558 ENSRNOG00000029613 ENSRNOT00000043588 1 1 1 60 15 27408154 27408173 GACCAAACCTCCATAGTCTG 58 27408113 27408133 GTGTAAGAGAATCCAGCAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 2 2 2 80 3 60721405 60726730 AGTCTGGCTATCATACTGCT 58 60721344 60721362 GGATCGCTTCTGTATGTGG 58 NA Rattus norvegicus 81 Dmrta1 ENSRNOG00000024093 ENSRNOT00000038972 3 1 1 132 5 108278852 108278870 ATGACTGTAGCTGCTCTGG 59 108281476 108281495 GGCATGACTCACAGTTACTC 58 NA DesignNoJunction Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471,ENSRNOT00000058548 2 2 2 80 17 63284813 63286370 TGGAATTCTGCTTATCTAGGGAG 60 63286407 63286428 TTGGCACATATTGATCACTGTC 59 NA Rattus norvegicus 81 Dnajb11 ENSRNOG00000001803 ENSRNOT00000002462 1 1 1 80 11 81748739 81751953 GCTGCTTATGAGGTTCTGTC 59 81748678 81748696 ATGCCCATCTTTCAAGCCT 60 NA Rattus norvegicus 81 Rrp9 ENSRNOG00000012927 ENSRNOT00000017469 1 1 1 80 8 115185198 115185216 TTACGTGCTTGGTCATCAC 58 115185257 115186006 CTACACTCCACTTTATGATGGT 58 NA Rattus norvegicus 81 Cul4b ENSRNOG00000002585 ENSRNOT00000065023 2 1 1 80 X 124844450 124844469 CAAACGCCTATTAGTTGGCA 59 124843643 124844408 GCTCCACATTCGTGTTTCAG 60 NA Rattus norvegicus 81 Avpr1b ENSRNOG00000049261 ENSRNOT00000074204 3 1 1 147 13 48399654 48399672 ATCAGTACCATCTCCAGGG 58 48390825 48399546 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Il23a ENSRNOG00000003254 ENSRNOT00000004363 3 1 1 83 7 2712023 2712265 TGGGACAAATGGATCTACTAAGAG 60 2711963 2711981 CACAACCATCACCACACTG 59 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748,ENSRNOT00000034041 1 2 2 80 2 27252122 27252140 TCTCGGAAATGTGGAGCTG 60 27246416 27252079 GCAGTCTTTCCTTGCTTGTC 60 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748,ENSRNOT00000034041 3 2 2 80 2 27246417 27252081 CTGACAAGCAAGGAAAGACTG 60 27246357 27246376 CCGCTTTGATGAGCATATCC 59 NA Rattus norvegicus 81 LOC100911994 ENSRNOG00000050855 ENSRNOT00000064866 3 1 1 80 4 31343271 31343290 TTCAACCACATTTGGATGCT 58 31343333 31343977 CAGTTGAGACTGTCTGGGA 59 NA Rattus norvegicus 81 Atg4a ENSRNOG00000050960 ENSRNOT00000074776 1 1 1 80 X 112377445 112396706 AGAACCAGTGGTATTGCCT 59 112396750 112396768 TATCAACGAAGGTCTGGGT 58 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386,ENSRNOT00000021306 1 2 2 80 4 179685074 179693129 TGTATCAAGTTCTCTTGGAGAC 58 179685015 179685033 TTGGAGGAGTTAACAAGCC 57 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304,ENSRNOT00000046771 2 3 3 80 14 17553261 17553790 CAGAATTACAGAGTGGACGAG 58 17553832 17553850 AATCCCTGATGGAGAAGGC 59 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 3 2 2 80 1 189176354 189176856 CAATGTTTCTGACCCTCAGAG 59 189176294 189176313 AAACACTTGTCCAGCTTCAC 59 NA Rattus norvegicus 81 Mettl15 ENSRNOG00000004926 ENSRNOT00000006670 1 1 1 80 3 100222458 100277884 CTTTCAGAAATGTACCCGACAC 60 100222399 100222420 TCCAGCTTTCATTAGCAAAGTC 59 NA Rattus norvegicus 81 Hsbp1 ENSRNOG00000014415 ENSRNOT00000019443 1 1 1 87 19 51985683 51986387 CATCGGAAGGATCGATGAC 58 51986438 51986456 TTCTTCTACTCCAGCCTGG 58 NA Rattus norvegicus 81 Rpusd3 ENSRNOG00000009084 ENSRNOT00000068001 1 1 1 80 4 145368565 145368655 ACCTACTGTGCCATCACTG 59 145368503 145368521 ATCCATTCGTTCCAGCCTC 60 NA Rattus norvegicus 81 LOC499306 ENSRNOG00000054336 ENSRNOT00000077274 1 1 1 80 1 221569033 221569054 TCAGATATGGCAACAGTATCAG 58 221578511 221583714 CCCGGATAGAATCCTCCAG 59 NA Rattus norvegicus 81 Dlgap5 ENSRNOG00000010721 ENSRNOT00000015553 2 1 1 80 15 24180966 24180987 GAAACTGACAGACTAAACTCAC 57 24179741 24180927 AAGATCTTTAGCATCATCGGG 58 NA Rattus norvegicus 81 Olr566 ENSRNOG00000053263 ENSRNOT00000079476 1 1 1 60 3 75518651 75518669 GTCCTATGACCGCTATGTG 58 75518693 75518711 TGGGTTCATGACAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr12 ENSRNOG00000039832 ENSRNOT00000061129 1 1 1 60 12 10256668 10256688 GTACAATTCCATCATCAACCC 57 10256710 10256728 GGCTTTCTGGATCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 1 3 3 92 10 13321420 13323535 CATTAAGGGCATCCAGCTG 59 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Cacna2d3 ENSRNOG00000031287 ENSRNOT00000048043 3 1 1 80 16 5124807 5126099 GTGCTCCTTTCAGTTTAGGT 58 5124746 5124767 CTTCTTCAATGGTTACATTCCC 58 NA Rattus norvegicus 81 Ankrd13d ENSRNOG00000028247 ENSRNOT00000025641 2 1 1 81 1 219530138 219530156 CCAGTCGACTCACTTCTCC 60 219523842 219530097 CAGATACCACATTTGTTCCTCTC 59 NA Rattus norvegicus 81 LOC100125368 ENSRNOG00000043289 ENSRNOT00000031481 3 1 1 81 7 10896371 10896390 TTGGATCCTTCCCAGAAGAG 59 10896018 10896331 CCAATTTGTAGCCTATAGCAGTG 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000046227 1 1 2 88 7 118492971 118494186 ATTTGCCAGACAGACTCCA 59 118494238 118494256 CCAAAGTCAGGAATCTGCC 59 NA Rattus norvegicus 81 Zranb2 ENSRNOG00000009990 ENSRNOT00000055259 2 1 1 80 2 263870774 263870796 GTCGAAGATAAAGAATCAGAGGG 59 263870836 263871292 ATCCTCGTCCTCATCTAGC 58 NA Rattus norvegicus 81 Flt4 ENSRNOG00000002511 ENSRNOT00000003519 1 1 1 80 10 35114555 35116460 AAAGCCTCTGTGGATAACC 57 35116502 35116522 TCTATGCCTGCTTTCTATCTG 57 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 1 2 2 83 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762101 70762119 GATGATCAGGGAGATGCCT 59 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 2 2 2 80 1 31723807 31723827 TCTAGATGCCATTGCTAAGGA 59 31723868 31725710 AGCTCATTCAGATGTTGCTC 58 NA Rattus norvegicus 81 RGD1561699 ENSRNOG00000047839 ENSRNOT00000068306 2 1 1 86 14 15424608 15425382 TGAATCAAGTCCTAGGGTGC 60 15424541 15424561 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Styx ENSRNOG00000007956 ENSRNOT00000010612 1 1 1 80 15 19714475 19714496 AATACAGATGATGTCACCACTC 58 19714534 19717391 TATGTTCTCTTCACACTACCTG 57 NA Rattus norvegicus 81 Tpra1 ENSRNOG00000016665 ENSRNOT00000022534 1 1 1 80 4 120851395 120851505 TTGCCTTTGGTCACCTAGAG 60 120851548 120851566 CTGAGTAGGCCAGAGACAG 59 NA Rattus norvegicus 81 Gstk1 ENSRNOG00000016484 ENSRNOT00000022275 3 1 1 80 4 71622435 71622639 GAAAGACAGTGGAAACCAACC 60 71622680 71622699 TGCTTCAGGAGAGGAATCTC 59 NA Rattus norvegicus 81 Eif2s3y ENSRNOG00000060048 ENSRNOT00000088593 2 1 1 80 Y 919131 919835 AAGGAGTATTAAAGGTGGGC 57 919876 919896 TACACATAAGCTTCCCTTCAC 58 NA Rattus norvegicus 81 RT1-O1 ENSRNOG00000032664 ENSRNOT00000048036 2 1 1 119 20 3162199 3162218 ATGGAACCTTCCAGAAGTGG 60 3162300 3162449 GATGGAGGAGCCATCTCAG 59 NA Rattus norvegicus 81 Fgfbp3 ENSRNOG00000022796 ENSRNOT00000033780 2 1 1 80 1 255557035 255557053 CAGACAGCCGTATAAAGCA 58 255556689 255556991 ATCCTCGGATCGAATTCCA 58 NA InUTR Rattus norvegicus 81 Dennd4a ENSRNOG00000011739 ENSRNOT00000016260 3 1 1 80 8 70343285 70346912 CACCATTTCTCAAACTGGTG 57 70346952 70346973 GTGTTCATCAGATTCTTACACG 58 NA Rattus norvegicus 81 Cyp3a2 ENSRNOG00000000978 ENSRNOT00000076813 1 1 1 80 12 11677728 11677746 CTGCTTTCAGCTCTCACAC 59 11677296 11677684 TCTATGGGTTCCAAGTCGG 59 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 2 2 2 80 1 220471088 220471245 CATAGTGCACAAAGAGCTACAC 60 220471286 220471304 GCTACATAGGCTGTGTCCA 59 NA Rattus norvegicus 81 LOC100912571 ENSRNOG00000049598 ENSRNOT00000075306 1 1 1 80 11 82889851 82889982 CTGCAATTATCTTTGAGACTCC 57 82889792 82889812 TCAGGTATTTCTGAAGCAGTC 58 NA Rattus norvegicus 81 AABR07005506.1 ENSRNOG00000025122 ENSRNOT00000036330 2 1 1 80 1 183630303 183630322 AAGATTGGGCAGATTGAGGA 59 183629450 183630260 AAGTTTAGAGGCGTGACGA 59 NA Rattus norvegicus 81 Tbc1d9b ENSRNOG00000003050 ENSRNOT00000043085 3 1 1 80 10 35654830 35654853 CTATAACTACATCTGCTTTGCCAG 60 35654892 35656373 TCAACAATGGTCACCTCCC 60 NA Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000077016 2 1 2 64 12 24651466 24651484 ATCTGCTTCAAGATGAGCC 58 24651512 24655701 CTCCATCTGGACCTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Usp10 ENSRNOG00000016509 ENSRNOT00000022432 3 1 1 80 19 52591597 52591616 AGATGGAAGTCAAAGAAGGG 57 52591656 52596983 TTACAGTCTCCAATAACTCTGC 58 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 1 2 2 80 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314248 116314402 AGTTTCCGGAAGTATATTTGGC 59 NA Rattus norvegicus 81 Fig4 ENSRNOG00000000312 ENSRNOT00000000343 2 1 1 80 20 45968363 45969713 CCTTACGACGAAGTTATCTGTG 59 45968304 45968325 ATCAATCTCCTCTTCCCATCTG 60 NA Rattus norvegicus 81 Fig4 ENSRNOG00000000312 ENSRNOT00000000343 3 1 1 80 20 45989787 45991691 AAGTACACCAAGAGTAAGCTG 58 45989727 45989746 GAAGCCTGTCTTCTTTACCA 58 NA Rattus norvegicus 81 Vldlr ENSRNOG00000027491 ENSRNOT00000035814 3 1 1 80 1 245258635 245258655 GACATCACCAAAGTATGTGAC 57 245258697 245259291 TTCGTTGATATGGCACTCC 58 NA Rattus norvegicus 81 Nup54 ENSRNOG00000002247 ENSRNOT00000003070 2 1 1 80 14 17139705 17141057 TCAAGCAGCATTTGAAACAG 58 17141099 17141118 GCTTGATATCTTCCAGGTCG 58 NA Rattus norvegicus 81 Canx ENSRNOG00000003343 ENSRNOT00000049942 3 1 1 80 10 35805097 35805252 GAAGAGGAGAAGCTTGAAGAG 58 35805037 35805058 GCTATCTTCCTCATCTTGACTG 59 NA Rattus norvegicus 81 Mir378b ENSRNOG00000048754 ENSRNOT00000072291 1 1 1 60 5 5575675 5575694 AACAGTGGACTTGGAGTCAG 60 5575634 5575653 AGTGATAGTCCATGTCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc9 ENSRNOG00000005409 ENSRNOT00000007339 1 1 1 80 6 95224624 95224642 CCTGCCTTCTCTTCAACGA 60 95224684 95226488 TTCATTGCTGTTGAATCTGCC 60 NA Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000015286 2 1 2 80 4 32495424 32495444 TGAAGGACGAATTTAGGAGAC 58 32495485 32558604 CTGCATATGTCTCCCATTCC 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 2 2 2 80 3 114052817 114053059 AAGTTGATAGGTCCTGGAGAG 59 114052757 114052775 GATAGCAGGAAAGCTCTGG 58 NA Rattus norvegicus 81 Afm ENSRNOG00000002878 ENSRNOT00000060535 3 1 1 80 14 19083796 19084665 ACAACGCCATTTCCTTGTC 59 19083734 19083755 ATTTCCTTACTAAGGGAGACCA 58 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152,ENSRNOT00000015325 3 2 2 80 4 81240052 81240156 GAAGAGGAGGAAACTTTGGT 58 81239991 81240009 CCCTAAAGTTGCTTCCTGG 58 NA Rattus norvegicus 81 Dnaaf2 ENSRNOG00000028155 ENSRNOT00000059187 1 1 1 80 6 91482775 91485641 CAGATCCATGCGAAGTTGC 60 91482713 91482734 AGGACATTCTTCTTTGACTCCT 59 NA Rattus norvegicus 81 Ccdc158 ENSRNOG00000002204 ENSRNOT00000003009 1 1 1 80 14 16956783 16956804 GTCAAGATATAATACAGCGCCA 59 16956843 16957925 CCTGAAGTTCTTTCACATCCA 58 NA Rattus norvegicus 81 Dctn3 ENSRNOG00000014208 ENSRNOT00000019561 3 1 1 80 5 58104972 58106595 CTAGGAAGGTAGCTGATGGT 58 58104911 58104930 GAATCTTCACCCTCTCCCTC 59 NA Rattus norvegicus 81 Sugp1 ENSRNOG00000052111 ENSRNOT00000078005 2 1 1 80 16 21101368 21101546 GAACCCAGTGAACAAGGGT 60 21101306 21101325 TCCTCCTTTGAGAGTTCAGC 60 NA Rattus norvegicus 81 Smu1 ENSRNOG00000007671 ENSRNOT00000010464 1 1 1 80 5 57054081 57055081 CTGAGCAGACATATTAAGTTTGGG 60 57054024 57054042 GGTGACCAGATACTGACCG 60 NA Rattus norvegicus 81 Rtp4 ENSRNOG00000028895 ENSRNOT00000043660 1 1 1 80 11 80640451 80643715 AGTAGTTGGCAGGTTCCAG 59 80640389 80640407 TGGAACATGTGGCATACGA 59 NA Rattus norvegicus 81 Wfdc1 ENSRNOG00000015904 ENSRNOT00000021630 1 1 1 80 19 52326297 52326315 TTAAGCAACGTCGACAAGC 59 52328966 52330938 CATACTTGGAGTCACCTTCTG 58 NA Rattus norvegicus 81 LOC498222 ENSRNOG00000004341 ENSRNOT00000005791 2 1 1 80 13 47460417 47463916 CTCTGGATCTAGTGACAGCA 59 47463959 47463977 CCAATGGTCTTCTCCAGGA 59 NA Rattus norvegicus 81 Rn60_X_0730.3 ENSRNOG00000051117 ENSRNOT00000076480 1 1 1 60 X 72059401 72059420 ATCTCCAAGATGTTCCTGTG 57 72059360 72059378 TGACAAATGGGTTCCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqsec3 ENSRNOG00000014083 ENSRNOT00000018902 2 1 1 80 4 153962071 153962092 GAACAAGTTACAGAAACAAGCC 59 153959768 153962031 GGACACAGCTTGAGAATCAC 59 NA Rattus norvegicus 81 Cd209b ENSRNOG00000029881 ENSRNOT00000061749 2 1 1 80 12 2826064 2826183 CTCTTGATTCCATGGAGGAC 58 2826003 2826022 AATTTGGTCGTAGTCTGGAG 57 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 1 2 2 80 4 99509049 99509070 CCAATGGTGTTGAAACTTAAGG 58 99508463 99509010 CATCAGATCATCAAACCTGGA 58 NA Rattus norvegicus 81 Cdk17 ENSRNOG00000004148 ENSRNOT00000005762 2 1 1 80 7 34057204 34058327 CGATGGAGGACTTGAATAAGC 59 34058369 34058387 TGATCTGCAGCTTCTCCAG 60 NA Rattus norvegicus 81 Skint8 ENSRNOG00000037680 ENSRNOT00000057169 2 1 1 80 5 131898521 131899117 TTTGCAGAAGACAAGGATGTG 59 131899158 131899177 TCAGTATTTGAACTGGCCAC 58 NA Rattus norvegicus 81 Proser2 ENSRNOG00000045553 ENSRNOT00000073933 3 1 1 80 17 76100870 76134349 GTTTCACGATGGATGACGAG 59 76134389 76134410 CGAGAGTCTCTTCAAAGAACAG 59 NA Rattus norvegicus 81 Gdpd1 ENSRNOG00000060561 ENSRNOT00000088182 3 1 1 80 10 74346356 74346863 ATTCAGAAGGTCTCAGAACTG 58 74346296 74346314 TACAATCTCAGAGCTGGCA 58 NA Rattus norvegicus 81 AABR07064998.1 ENSRNOG00000038308 ENSRNOT00000058328 2 1 1 92 6 103807493 103807511 GTGTCGGAGGAAGAAATGG 58 103807221 103807438 TCTATCCTCCTTCTGTTCCC 58 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345,ENSRNOT00000045237 3 2 2 80 5 160133579 160138679 ATCCACAGATGTCTGTGGT 58 160133517 160133535 TGGTACTGCCTCTTCATGG 59 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360 2 1 4 192 X 70460819 70460838 GTAGCAGGGTTATGAAGCTC 58 70459691 70460237 AGTCTGGAATCACCTTGGAG 59 NA InUTR Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 1 3 4 80 X 70459694 70460241 TCATCTCCAAGGTGATTCCAG 60 70459634 70459656 CATCATTCACAGCTAGAACTTGG 60 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 3 3 4 80 X 70459695 70460242 TTCATCTCCAAGGTGATTCCA 59 70459635 70459656 ATCATTCACAGCTAGAACTTGG 59 NA Rattus norvegicus 81 Gata3 ENSRNOG00000019336 ENSRNOT00000026187 3 1 1 66 17 72445297 72449867 ACTCCACAATATTAACAGACCC 58 72449894 72449912 CATCTTACGGTTTCGGGTC 58 NA DesignRelaxed Rattus norvegicus 81 Prap1 ENSRNOG00000018446 ENSRNOT00000024912 3 1 1 81 1 212561628 212561747 AAAGCATTCAGATACCATGACC 59 212561788 212561807 CAGTTCTGGACCCTGAAGAG 60 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000043425 ENSRNOT00000066744 3 1 1 80 12 13417942 13418524 TGTCAGACAAGTATCTCCTGTC 59 13417883 13417901 GGATTGGCCTATACTGCCA 59 NA Rattus norvegicus 81 Slc30a4 ENSRNOG00000000170 ENSRNOT00000000184 1 1 1 80 3 114827551 114827569 AGAGGAAGGTGAAGACCAG 58 114819844 114827509 TGTATCCACCTACAAGCTCTC 59 NA Rattus norvegicus 81 Akr1b1-ps2 ENSRNOG00000023285 ENSRNOT00000018151 2 1 1 60 4 148952004 148952023 CTGCTGTTAACCAGATCGAG 59 148951963 148951984 CAGTACTCAATCAGCTTCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr152 ENSRNOG00000017211 ENSRNOT00000023119 1 1 1 60 1 169553246 169553264 CCTGCCTTCTTCTCCATCC 60 169553286 169553306 TGAGAACATTACGAGGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr641 ENSRNOG00000030406 ENSRNOT00000049517 3 1 1 60 3 76926094 76926115 TTGGGTCTTACAGAGAATCAGG 60 76926055 76926075 ACATGATTAGAAGCACAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311517 ENSRNOG00000020199 ENSRNOT00000027347 3 1 1 84 5 173556920 173558776 AGTCTTCAGTGAGAAAGCCA 59 173558823 173558841 TCTACTGTGGAGAAGGCAG 58 NA Rattus norvegicus 81 Cops6 ENSRNOG00000001346 ENSRNOT00000001820 2 1 1 80 12 19305019 19305352 GATATAATCAATGGAGAGGCCAC 59 19305392 19305410 ACCGATACGTTCAGCTTCC 60 NA Rattus norvegicus 81 LOC679195 ENSRNOG00000029868 ENSRNOT00000045263 3 1 1 60 13 37697534 37697553 CCGCATTCCTTAAGAATGCC 60 37697493 37697511 CAGACAGTGAAGGACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 2 2 2 80 6 26261342 26262443 AGTACGAAAGGGAATATCGTC 57 26259813 26259832 GCTCCTTCTGCTCATTACTC 58 NA Rattus norvegicus 81 Cisd2 ENSRNOG00000048258 ENSRNOT00000074632 2 1 1 84 2 240597721 240611432 CCTCACAGTTGCAGAATGG 59 240597655 240597673 GAAGAATGGACGAACTGCA 58 NA Rattus norvegicus 81 Nptx1 ENSRNOG00000003741 ENSRNOT00000005067 1 1 1 80 10 108688636 108690499 CTGGAGAAAGGTCAGAAAGAC 58 108688576 108688595 GGCATACATGTAGTTGGTCC 59 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 1 2 2 80 17 80678776 80678796 GAGGTTTGTCACTGATTCCAC 59 80677903 80678736 CTTCCACCACAAGATGATGTC 59 NA Rattus norvegicus 81 Trim6 ENSRNOG00000017147 ENSRNOT00000023043 1 1 1 80 1 169416858 169416876 CTTTGTGAGCGATCTCTGG 58 169416919 169417417 GAACATGTCCTGGTACTCCT 59 NA Rattus norvegicus 81 Trim6 ENSRNOG00000017147 ENSRNOT00000023043 3 1 1 80 1 169416860 169416878 TTGTGAGCGATCTCTGGAG 59 169416921 169417419 TGGAACATGTCCTGGTACTC 59 NA Rattus norvegicus 81 Ovol2 ENSRNOG00000006850 ENSRNOT00000065553 2 1 1 112 3 138449224 138461604 AAATCAAGTTTACCACTGGCAC 60 138449133 138449152 GTTGTGGCACTTAAGGTGAC 60 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378,ENSRNOT00000060514 1 2 2 80 15 28487482 28487500 GATGACTCTGCTGAGGAGG 59 28487315 28487438 ATCCTTCAACTCCAGCTGG 59 NA Rattus norvegicus 81 Il1rapl1 ENSRNOG00000029663 ENSRNOT00000076283 2 1 1 80 X 56087242 56257664 GTGTCATCAGGAACTCCAC 58 56087180 56087198 TGTAGCAAAGTCCAGTGTC 57 NA Rattus norvegicus 81 Prf1 ENSRNOG00000000562 ENSRNOT00000000681 3 1 1 81 20 30920153 30920256 GCCAAGTTGATGGAGATCAG 59 30920297 30920318 CATTCCCAAAGTCCATCTTGTC 60 NA Rattus norvegicus 81 Olr223 ENSRNOG00000019583 ENSRNOT00000026488 1 1 1 60 1 171028160 171028181 TGAACTTATCTATGGCTGAGAC 58 171028121 171028142 GGGAATACAAGGATGACAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076907,ENSRNOT00000003851 1 2 3 80 13 78956154 78956174 GTACGGCTTTAGAATACGGTG 59 78934647 78956113 GTCGAATGTTGGTACACCTG 59 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 1 2 2 80 10 14310671 14310692 AAAGACCAGTGACATATTTGGG 59 14307365 14310630 AAGACATGATCCTTGGGCT 59 NA Rattus norvegicus 81 Slc25a14 ENSRNOG00000006871 ENSRNOT00000009637 2 1 1 80 X 135499656 135500797 CACTTTGTTTCCAGCTTTACCT 60 135500836 135500856 CATCATTCGAGTTCTCACCAC 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939,ENSRNOT00000087458 2 3 3 80 9 65722718 65722737 CAGAGTAGAGCAGATGACCA 59 65720964 65722676 TCTAGATCTCGGTCCCTCTC 59 NA Rattus norvegicus 81 Olr544 ENSRNOG00000031356 ENSRNOT00000051625 1 1 1 60 3 74867790 74867810 CTCTTTATGTACTTGCGTCCC 59 74867750 74867771 GAGCAACTACCTTATCAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galnt4 ENSRNOG00000053075 ENSRNOT00000086483 3 1 1 80 1 213876106 213876223 CTCCCTGTACACAGATGAGTC 60 213876265 213876283 CCTCCTACATGGCTAGCTG 59 NA Rattus norvegicus 81 Rrm2 ENSRNOG00000054286 ENSRNOT00000091551 3 1 1 81 6 43885775 43886653 CAATGAGAACTTGGTGGAGC 59 43886697 43886715 CATGGCAATTTGGAAGCCA 59 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 1 2 2 80 4 78514251 78514269 TTCTATGGCTGAGCAGGTG 60 78514311 78514633 GTTACAGCCAAAGGATACCTG 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 1 2 5 80 9 43821829 43821850 AGACAACTTTCAGTAAAGGACG 59 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Dnajc5b ENSRNOG00000012851 ENSRNOT00000017387 1 1 1 80 2 104362265 104382544 GGAGAAAGATATGGACTTTCCAG 59 104382582 104382602 CGAGATCCTTCTCTGATTAGC 58 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292,ENSRNOT00000084238 2 2 3 80 2 154567243 154567263 AGACAGTGTAGACAAAGTAGC 58 154567303 154569735 GATTCATTGGCTATACCTGCA 58 NA Rattus norvegicus 81 LOC499339 ENSRNOG00000012574 ENSRNOT00000033724 2 1 1 80 1 245499089 245502824 GATTGCTAATGGCCAGTACTC 59 245499029 245499047 ATCTGCTTCACAAGCTTGG 59 NA Rattus norvegicus 81 Tceal8 ENSRNOG00000028585 ENSRNOT00000017138 2 1 1 189 X 106714938 106715381 CCTGCTACTTCCAGGACTC 59 106714171 106714190 GATCTTCTGAAGGATGGCCT 59 NA InUTR Rattus norvegicus 81 Slc47a2 ENSRNOG00000038055 ENSRNOT00000057907 2 1 1 80 10 47590370 47593569 CTAAACTTGGGATAATAGGCCTC 59 47590312 47590335 GGATGTAGATTAGATAGGAGAGGG 59 NA Rattus norvegicus 81 AABR07017560.1 ENSRNOG00000043459 ENSRNOT00000067148 3 1 1 80 15 26924197 26924219 GTCAGTAGGTATCCATTCGGT 59 26924137 26924158 AAGCTATCTACCTCATTGGGAC 60 NA Rattus norvegicus 81 Rpusd1 ENSRNOG00000023639 ENSRNOT00000015206 3 1 1 80 10 15099826 15099976 TGCTATGGGTTCAGGTTCTG 60 15100019 15100037 CGCAGCTGCTTTATTCAGG 60 NA Rattus norvegicus 81 Zranb1 ENSRNOG00000017294 ENSRNOT00000023257 1 1 1 80 1 204980105 204984574 CAATACTGCTTACAGAGGTGTC 59 204984612 204984633 GGATTTGTTCTGTCAGTTCAGG 60 NA Rattus norvegicus 81 Tril ENSRNOG00000026941 ENSRNOT00000036951 1 1 1 60 4 83971936 83971954 GTAACGAGATTGGACGCCT 60 83971894 83971913 AGCTTGACTAGACTCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmf1 ENSRNOG00000000230 ENSRNOT00000000246 2 1 1 80 10 15025341 15025359 AAGCAGGTCATGAACACCT 59 15025401 15025569 CCGTTCTTTGGTGATACTTCC 59 NA Rattus norvegicus 81 Itgb1bp2 ENSRNOG00000003596 ENSRNOT00000004888 3 1 1 80 X 71345552 71345574 CACTTCTTATATCTCAAGCCCTG 59 71345613 71345739 TATTGTCAAGTCCTGCTCCA 59 NA Rattus norvegicus 81 LOC103693685 ENSRNOG00000060686 ENSRNOT00000086988 3 1 1 60 13 92466241 92466260 AGTTATGGCCTATGATCGCT 59 92466281 92466301 CATGAGACTAGGGTAACGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365250 ENSRNOG00000022680 ENSRNOT00000029920 2 1 1 80 1 103717188 103717226 GTGGCAACACTCTGTTACTG 59 103717127 103717148 TTTCCTTCACTAAGGGTACTGG 60 NA Rattus norvegicus 81 Ambn ENSRNOG00000003718 ENSRNOT00000005003 3 1 1 80 14 21247055 21247785 CTTTCTCAGTATTCTAGACTTGGC 59 21246998 21247016 AGAATTATGCGGTGGGAGG 60 NA Rattus norvegicus 81 Dhodh ENSRNOG00000015063 ENSRNOT00000066733 3 1 1 99 19 42068667 42070755 ACATGCTGGAAGTGAAAGTC 59 42070817 42070835 TTGTAGAGTCCGTCCACAG 59 NA Rattus norvegicus 81 Tm7sf2 ENSRNOG00000020989 ENSRNOT00000028485 2 1 1 80 1 221429138 221429157 TTCAGCCTCCTTCTCTATGC 59 221428997 221429098 CACAGAATTTCCTGAGTTTCCC 60 NA Rattus norvegicus 81 Gal3st3 ENSRNOG00000028743 ENSRNOT00000039842 1 1 1 60 1 220672513 220672531 GTAAGCCTCCTCATCCACC 60 220676507 220676525 TCAGAGGGAACAACTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Zcchc14 ENSRNOG00000018226 ENSRNOT00000074448 1 1 1 80 19 53653662 53653683 TTTAGACTGGCTTAGGAAACTG 58 53652361 53653621 AGGCTCAGAAACTTCTCCA 58 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 2 2 2 80 2 104053537 104057808 AAGGAACCTAAGCTTGCCA 59 104053475 104053494 ATCCAGATCATGAGTGGCAG 60 NA Rattus norvegicus 81 RGD1562066 ENSRNOG00000050977 ENSRNOT00000074623 2 1 1 60 4 71080465 71080483 CTAGTGCGACCGAATTCTG 58 71080423 71080444 AGGATGTAGTGTAGTTCTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsdl1 ENSRNOG00000015576 ENSRNOT00000020859 2 1 1 85 19 52211479 52215696 GGTCCCATTCTATTCAGTTCC 58 52211414 52211432 TAAAGAGCGGTTGAGGAGG 59 NA Rattus norvegicus 81 Mt1m ENSRNOG00000028841 ENSRNOT00000047663 2 1 1 94 20 3677602 3677620 CAATGCAAATGCACCTCCT 59 3677678 3677696 GAAGCCTCTTTGCAGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst8 ENSRNOG00000004989 ENSRNOT00000006667 1 1 1 81 3 143135784 143155909 CCCTGGAATGTGTCAGGAG 60 143155954 143155972 GGTGTAGATGTAGCCAGCA 59 NA Rattus norvegicus 81 Ring1 ENSRNOG00000000467 ENSRNOT00000000543 1 1 1 80 20 3813548 3813566 GAGATCGAGCTTGTGTTCC 58 3813299 3813509 AGTAGTCTTCACATACCTAGTCTG 59 NA Rattus norvegicus 81 Sprr3 ENSRNOG00000024046 ENSRNOT00000030295 1 1 1 60 2 192642433 192642451 TTGTTCCCATAGCCACCTC 59 192642391 192642409 TTGGTGTTTCCTGGTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm46 ENSRNOG00000025823 ENSRNOT00000035846 1 1 1 81 2 181861690 181861708 ATAAACTCTGCACAACGCT 58 181831428 181861645 CGACGGAAATTGTAGTCCA 58 NA Rattus norvegicus 81 Cxcr2 ENSRNOG00000014269 ENSRNOT00000019109 1 1 1 87 9 81427830 81432907 CTACAGCAGGATTAAGTTTACCTC 59 81432948 81432971 GTCAATATCTCCACTGAAGAAGTC 59 NA InUTR Rattus norvegicus 81 Atad5 ENSRNOG00000021903 ENSRNOT00000035642 2 1 1 80 10 67448000 67450826 CTTCCAAAGAGTCTGGAACTG 59 67450866 67450886 CATTGCCTACAAGTTCATTCG 58 NA Rattus norvegicus 81 Eif4ebp2 ENSRNOG00000055391 ENSRNOT00000082448 3 1 1 69 20 31072126 31072144 CTCAGGACTACTGCACCAC 60 31058366 31072095 TAAATGATTCGTGTTCCTCCC 58 NA DesignRelaxed Rattus norvegicus 81 AABR07017658.1 ENSRNOG00000046197 ENSRNOT00000075008 3 1 1 62 15 29680305 29680417 GGGATAAACTTTCTCCTGAGAG 58 29680264 29680283 GACACGAACATCAGGTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr859 ENSRNOG00000047595 ENSRNOT00000073361 3 1 1 60 5 137574858 137574876 ATTGTCACCTTGATCCACC 57 137574898 137574918 CACTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683844 ENSRNOG00000042667 ENSRNOT00000012598 2 1 1 60 5 129298076 129298095 GACCCAATTCGATTTCTGCC 60 129298035 129298056 ACCAGTCATCTATACAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029,ENSRNOT00000065649,ENSRNOT00000089897 2 3 3 80 4 38256123 38263250 GATGCTTCAGATTCTGAAGGG 59 38263288 38263310 AGAATCACTACAGGAACCTTCTC 60 NA Rattus norvegicus 81 Sec14l1 ENSRNOG00000002722 ENSRNOT00000003690 2 1 1 80 10 106095101 106095214 TGAAGAAGATCGCAGGAGTC 60 106095255 106095275 CGATGTGTAAAGTGCGATCTC 60 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 3 2 2 83 14 21490739 21552672 TTATAGCATGCTTCCAGTCAG 58 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Ptpn2 ENSRNOG00000017453 ENSRNOT00000023763 1 1 1 80 18 63447469 63465012 AAGCCCATATGATCACAGTC 58 63447408 63447429 TCTTCTATGTCAACTAAGCTGG 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000079735,ENSRNOT00000088239 2 4 7 91 9 43766441 43768282 GTCCACAACTTCAGGTTGG 59 43768336 43768355 AAGAGCTATAACAATGGCGG 58 NA Rattus norvegicus 81 Rn60_X_0683.2 ENSRNOG00000051200 ENSRNOT00000076082 2 1 1 60 X 67386535 67386556 CCAATGTCTGATCTAATGTCGT 58 67386576 67386595 TTGAGAAGGCTGAAGTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571,ENSRNOT00000030056 1 2 2 80 7 34763574 34764066 TACAAGGATGGAGGAAGGA 57 34763512 34763531 TCCATATCGTCATGAACCAC 58 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571,ENSRNOT00000030056 3 2 2 80 7 34763573 34764065 ACAAGGATGGAGGAAGGAG 58 34763511 34763531 TTCCATATCGTCATGAACCAC 58 NA Rattus norvegicus 81 Desi1 ENSRNOG00000005577 ENSRNOT00000007424 2 1 1 91 7 123259403 123259421 CTACGTGTACGACCTGTCC 60 123247544 123248749 CTATAGAGGTATGCCAGATTCCT 59 NA Rattus norvegicus 81 PVR ENSRNOG00000019202 ENSRNOT00000064305 2 1 1 80 1 80828806 80831010 TTTCCCTACCTTATCCACCC 59 80828745 80828764 TCAGGTTCACGTTAGTGAGG 60 NA Rattus norvegicus 81 Edn3 ENSRNOG00000007477 ENSRNOT00000009826 3 1 1 81 3 172857702 172857724 CACTTATAAGGACAAGGAGTGTG 59 172857764 172875988 ATAGGGCACAGTCTGTTCAG 60 NA Rattus norvegicus 81 Olr1588 ENSRNOG00000003509 ENSRNOT00000004659 2 1 1 60 13 92147200 92147220 CATCATCCTTGTCACTTTCCT 58 92147241 92147260 CACAGCACCAATGATTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1588 ENSRNOG00000003509 ENSRNOT00000004659 3 1 1 60 13 92147199 92147219 TCATCATCCTTGTCACTTTCC 58 92147241 92147259 ACAGCACCAATGATTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006055.1 ENSRNOG00000024991 ENSRNOT00000034299 1 1 1 121 1 215363190 215363262 CAAGCCTGTTTGCTGTCAG 60 215363087 215363106 TACAACAGCTGGACTGACAG 60 NA Rattus norvegicus 81 Tppp2 ENSRNOG00000025473 ENSRNOT00000048723 2 1 1 80 15 28319276 28319296 TAAAGACTGTGGCATCATGGA 60 28319336 28320073 TTCTTGGCCTTCACTTTACTG 59 NA Rattus norvegicus 81 Il17ra ENSRNOG00000011153 ENSRNOT00000014885 3 1 1 81 4 153013176 153013196 ATTATCTGCATGACCTGGAGG 60 153014785 153015754 TTGGCAAGATGCCATTGAC 59 NA Rattus norvegicus 81 Evx2 ENSRNOG00000001589 ENSRNOT00000002156 2 1 1 83 3 61580019 61580038 AGGGAGAACTATGTGTCTCG 59 61578634 61579973 GAACCACACCTTGATGGTG 59 NA Rattus norvegicus 81 Smpdl3a ENSRNOG00000000815 ENSRNOT00000001081 2 1 1 80 20 40799674 40799693 AAAGAGACCAACAATCCTGG 58 40799734 40800248 GTAATACTGCAACATGTCCAG 57 NA Rattus norvegicus 81 Zak ENSRNOG00000001515 ENSRNOT00000002068 1 1 1 80 3 59036670 59036689 GATGGCTCCAGAAGTTATCC 58 59036732 59043313 ATCTCCCAGAGAACCACAC 59 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682,ENSRNOT00000086542 1 2 2 80 14 19391685 19391705 GAAGCCCAATCAGAAAGAACC 60 19391746 19394368 CAACAACTCCACTACCTCCT 59 NA Rattus norvegicus 81 Olr239 ENSRNOG00000030863 ENSRNOT00000051241 3 1 1 60 1 172075725 172075746 CTACTCCACTCTCATGTCTTCC 60 172075686 172075704 GCCCGCATAGGAAATAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005,ENSRNOT00000068764,ENSRNOT00000079651 3 3 3 81 19 53495932 53495950 TCTGATGGAGAGGAAGTCG 58 53494669 53495889 CTTCACAATCTGGATATGGCC 59 NA Rattus norvegicus 81 LOC100910401 ENSRNOG00000047637 ENSRNOT00000075276 1 1 1 80 15 47457075 47457818 TCCCATGGCAAATTAGAACTG 59 47457860 47457878 CTCCAAGTTGATGTCGCTG 59 NA Rattus norvegicus 81 Olr286 ENSRNOG00000018955 ENSRNOT00000025611 3 1 1 60 1 212633215 212633233 ACAAGGGCTGTTATTTGGG 58 212633173 212633193 CAAGTTCTCTAGGACAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bhlha15 ENSRNOG00000025164 ENSRNOT00000037251 3 1 1 60 12 12406438 12406456 AAGATCGAGACCCTCACAC 59 12406396 12406415 TAAGTATGGTGGCTGTCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd300lb ENSRNOG00000036728 ENSRNOT00000035639 2 1 1 80 10 103472302 103472322 CTTCTAAGCAACTTTCCTGGC 60 103471266 103472261 TGTAATGGGTCCTCTTCTGC 60 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902,ENSRNOT00000080950 1 2 2 80 6 124363429 124370667 CTTACCAATCCCAGTGACTC 58 124363368 124363387 GATTGTGTTAAGCTGTCGTC 57 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 1 2 2 80 1 13289784 13289802 GGTACAGTAGCTCGGACTC 59 13289844 13292005 CTCCTGAATGAGACCTTTGAC 59 NA Rattus norvegicus 81 Nxf2 ENSRNOG00000011729 ENSRNOT00000015806 1 1 1 80 X 105785085 105785213 GCAATATCCCTGAACTGTTGTC 60 105785026 105785046 TCTCTGTCATGTCAGATAGCC 59 NA Rattus norvegicus 81 Igdcc3 ENSRNOG00000030800 ENSRNOT00000051353 1 1 1 80 8 70680261 70680758 GAACAATAACAGCACATTGAGC 59 70680799 70680817 GCAATGTTCTCAGCCACAC 60 NA Rattus norvegicus 81 Igdcc3 ENSRNOG00000030800 ENSRNOT00000051353 3 1 1 81 8 70680208 70680226 ACGTGGTTGAAGAATGGAC 58 70680270 70680765 CAGAAATGCTCAATGTGCTG 58 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 1 2 2 80 18 76707447 76707466 CAAACCCTGAGAAATGTTCC 57 76705401 76707405 CAGTAACCGATCTACCTCAG 57 NA Rattus norvegicus 81 Kif28p ENSRNOG00000050602 ENSRNOT00000075426 2 1 1 80 13 97972162 97972181 GTGTTCTATGGAGGCATGAG 58 97969476 97972120 CATTTGGTCATCTTCGGGAG 59 NA Rattus norvegicus 81 Armcx1 ENSRNOG00000046862 ENSRNOT00000052422 1 1 1 80 X 105913583 105913603 GACTACTTGGATCTCTGAGGG 59 105913643 105913927 CAGTGATACGCTTGTATGCAG 60 NA InUTR Rattus norvegicus 81 Rassf7 ENSRNOG00000017109 ENSRNOT00000023219 3 1 1 111 1 214203896 214203914 GGAGCTGAAGGTATGGGTG 60 214203989 214204165 ACCTGTCTGGCCTATAGCT 60 NA Rattus norvegicus 81 Dck ENSRNOG00000003296 ENSRNOT00000004440 3 1 1 81 14 20948659 20948677 GGATTGGGAAGTGGTTCCT 59 20944977 20948616 TGTTGTCAACTCCTCAAACTC 59 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633,ENSRNOT00000032518 2 2 2 83 11 70995598 71004136 AGCAGCAGAAACTTGAGGA 59 71004180 71004201 CATTTAACTCGTTCTGCTTTGC 59 NA Rattus norvegicus 81 Olr601 ENSRNOG00000005863 ENSRNOT00000007679 3 1 1 60 3 76085401 76085420 CTTAAGTCTCGCTTGCTCTG 59 76085360 76085379 ATTGACAATGGTGAACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC118833.1 ENSRNOG00000038412 ENSRNOT00000058502 2 1 1 62 19 54174198 54174216 CAGACACGTGTCAATGCTG 60 54174106 54174125 CACACCTTCAATGATGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 1 2 2 80 18 86365382 86383886 CTGATCATAACTGATGGTGGA 57 86383927 86383946 GATGACAAGTAGCAGTGAGG 58 NA Rattus norvegicus 81 Cyth1 ENSRNOG00000043381 ENSRNOT00000004196 1 1 1 80 10 107218824 107218843 AGATTGACCGGATGATGGAG 59 107217754 107218782 AGCAAGTGTCTGTAGACTGG 60 NA Rattus norvegicus 81 Zfp407 ENSRNOG00000043357 ENSRNOT00000065201 2 1 1 81 18 81170192 81199047 TGACTACAGGTCAAACTGTG 58 81170130 81170148 GTTGTACATCTTGACGCCT 58 NA Rattus norvegicus 81 Cyp2c22 ENSRNOG00000021924 ENSRNOT00000054724 1 1 1 80 1 259282793 259284741 CCAAGGGTTAGGCATTGTC 59 259282731 259282752 ATAGACCTTAAGACCATGAGGG 59 NA Rattus norvegicus 81 Olr664 ENSRNOG00000047937 ENSRNOT00000046926 1 1 1 60 3 77585105 77585126 GCAACATAATCATTGCAGTGAC 59 77585146 77585165 TACATGGGTGATCCAAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 3 3 3 80 X 128446881 128446899 GCAGATCTTGTGAGTGCTC 59 128446940 128452172 TTCAGTACTGATGTCTTTCTGC 59 NA Rattus norvegicus 81 Vcsa2 ENSRNOG00000001945 ENSRNOT00000002667 3 1 1 82 14 21559006 21612299 ATAGTATGCTTCCCGTCAGG 59 21558943 21558964 AGAGTTGAAAGATCTTGTGGTC 58 NA Rattus norvegicus 81 Bahcc1 ENSRNOG00000043102 ENSRNOT00000066736 1 1 1 80 10 109479465 109479483 GTGGTGAAGGTCAAATGGT 58 109479526 109479696 GTATAGTGCATTCTTCCCGT 58 NA Rattus norvegicus 81 Polq ENSRNOG00000002471 ENSRNOT00000063995 2 1 1 80 11 66615430 66616879 AAAGCAGTCTGAAATGAGTCC 59 66615370 66615388 AGGTACTCCATCCTCTCCT 58 NA Rattus norvegicus 81 Chrac1 ENSRNOG00000009103 ENSRNOT00000012121 1 1 1 80 7 114323637 114323655 GAAGAGCTCTCCTGAGGTG 59 114323698 114325727 TACTGAACAAAGAGCTCCGT 59 NA Rattus norvegicus 81 Cyp51 ENSRNOG00000007234 ENSRNOT00000009985 3 1 1 80 4 27184505 27188217 TTATGAGCAGTTGAAGGATCTG 58 27188257 27188276 ATGGTCATTATAGGAGGCCT 58 NA Rattus norvegicus 81 Uhrf2 ENSRNOG00000011308 ENSRNOT00000015406 1 1 1 80 1 248280156 248283721 AACATGAACAGGGCATTGG 59 248283765 248283783 AGCTCTCCAATTCCGAGAC 59 NA Rattus norvegicus 81 LOC100362391 ENSRNOG00000048888 ENSRNOT00000073768 3 1 1 60 4 102426257 102426278 ATGGAACTTCCAGATTACAGAC 58 102426299 102426317 TCTGCATCGCTTCTAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911888 ENSRNOG00000049467 ENSRNOT00000074022 2 1 1 60 4 1400337 1400358 TCTGAGTTCATTCTTATGGGAC 58 1400379 1400397 GGACAAACAAGGGACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360220 ENSRNOG00000046567 ENSRNOT00000060396 2 1 1 80 15 29976382 29976571 GATTTGCTGGGTGAGAGGA 59 29976320 29976341 CTCAGAGAAGAATTGGTTCCCT 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357,ENSRNOT00000080666 3 3 3 80 10 46105626 46106617 CTTTCAGATACATACCAAGGAGG 59 46106657 46106675 ATGGTCTGGATCCAGTTCC 59 NA Rattus norvegicus 81 Celf2 ENSRNOG00000023661 ENSRNOT00000023436 1 1 1 80 17 75647772 75652054 CCAGAAGGAAGGTCCAGAG 59 75652097 75652116 ATCTGCAGAATGTCCTGGTC 60 NA Rattus norvegicus 81 Snapc3 ENSRNOG00000010825 ENSRNOT00000015254 2 1 1 80 5 101550989 101551007 CCCTTCTTACCAAGAAGCA 57 101551051 101553053 TGTTTGTCACCCATCTAGC 58 NA Rattus norvegicus 81 AABR07017681.1 ENSRNOG00000049482 ENSRNOT00000073984 3 1 1 70 15 30019004 30019022 CTAGGCCTTCACCTGTCTG 60 30018815 30018833 GGACTTTGTTTCACCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Sys1 ENSRNOG00000014480 ENSRNOT00000030054 3 1 1 60 3 160911060 160911078 TCAATGATGTCCTTCGTCC 57 160912076 160912094 GGATGAAGTACAGCAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Cep57l1 ENSRNOG00000000303 ENSRNOT00000000331 2 1 1 80 20 46620294 46620313 CTAAACTGGAGAAGCTGGAC 58 46619088 46620252 TAATCTTCTCCTCCGCAGTC 59 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925,ENSRNOT00000033672 2 2 3 80 4 85301255 85301273 AATGCCTGGAGAATGGGAC 60 85299689 85301212 ACTTCCTCTGCTTGTCATCC 60 NA Rattus norvegicus 81 Stkld1 ENSRNOG00000027911 ENSRNOT00000031316 1 1 1 80 3 5493637 5494357 GATCGACTATCAATCAAGGATGTG 60 5494395 5494414 CATGTTCAGAGCAACACAGG 60 NA Rattus norvegicus 81 Olr1440 ENSRNOG00000048241 ENSRNOT00000048778 1 1 1 60 10 44972280 44972298 GACACCTTCCTCTTCACAG 58 44972238 44972257 TGATGTTTCCTATGAGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hck ENSRNOG00000009331 ENSRNOT00000012432 2 1 1 80 3 148601700 148601721 CCAAGAAAGAAGGCTATATCCC 58 148601761 148603256 TACCCTTGAAGAACCACTCC 59 NA Rattus norvegicus 81 Rftn1 ENSRNOG00000011321 ENSRNOT00000015210 1 1 1 80 9 12853631 12853649 TTGGAACTGGATCACTGCT 59 12853688 12881367 CTCCTGTACCTTCTTAATGAACTC 59 NA Rattus norvegicus 81 Ppp1r1b ENSRNOG00000028404 ENSRNOT00000037752 2 1 1 95 10 86306288 86310334 CATCACTGAAAGCTGTGCA 59 86310392 86310411 CTAACTCGTCCTCTTCCTCC 59 NA Rattus norvegicus 81 Smim3 ENSRNOG00000019536 ENSRNOT00000026426 3 1 1 65 18 55771402 55771420 TGCTTGTAATCCTGACTGG 57 55746135 55746153 GATTGGCTGATAGCATCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tyw1 ENSRNOG00000024352 ENSRNOT00000038092 1 1 1 80 12 29898137 29898157 CAGAGAAGAATGAAGACAGCG 59 29894038 29898099 ACTGGTACCCTTGTTTAGTTAGG 60 NA Rattus norvegicus 81 Fam135b ENSRNOG00000005159 ENSRNOT00000006966 3 1 1 80 7 112684217 112684236 CATGACAGATCGATTGTTGG 57 112682829 112684175 CCGATGAAGCTAATTCTGGA 58 NA Rattus norvegicus 81 Zcwpw1 ENSRNOG00000050128 ENSRNOT00000065866 1 1 1 80 12 21434157 21434179 CATGATAGAATGTGATCCTGACC 59 21433722 21434118 ACATGGTACTTAGACGGCAG 60 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496,ENSRNOT00000067070 3 2 2 80 1 15551194 15562895 ACTCCCTAGAGTATGACTACGA 59 15562934 15562954 CGTAGACTATCCCGTAAGTCC 59 NA Rattus norvegicus 81 Banp ENSRNOG00000019140 ENSRNOT00000025894 2 1 1 80 19 54803664 54810428 AACTCTGAAGAGGACTATCCC 58 54810470 54810488 GATGATGGCACAACGTACC 59 NA Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 3 1 1 79 10 109278974 109278992 CCTGAGTAAGGACCTGTGC 60 109280646 109280664 CCATCATGGTCTTCTTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr669 ENSRNOG00000053394 ENSRNOT00000084989 2 1 1 60 3 77677127 77677145 GATGCATGTGTCTCCTCTG 58 77677085 77677104 TCCTCTCGTAAACCATGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000050002 2 1 4 80 7 123628834 123629814 CTCTACAAGCTTCAACACCG 59 123628773 123628792 CAGTCTGTTGACAATGACCA 58 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 2 2 2 80 1 142963145 142965386 CAGATCCAGGTCTTCCTGAG 59 142965429 142965447 GGCAAAGACATCCTTCACC 59 NA Rattus norvegicus 81 Tstd3 ENSRNOG00000028185 ENSRNOT00000030559 2 1 1 80 5 35894808 35894920 TCAACATACCATTGGATGAGG 58 35894748 35894769 GCTTCTCTTCACCATACTTCTC 59 NA Rattus norvegicus 81 Topors ENSRNOG00000006485 ENSRNOT00000066081 2 1 1 83 5 56558458 56565041 TCCTCGGAGATAATGGCCT 60 56558393 56558411 CTGCTGCAGTTTGCTAGTG 60 NA Rattus norvegicus 81 Slc25a30 ENSRNOG00000001052 ENSRNOT00000001389 2 1 1 80 15 57822777 57826058 CGCTGTATTCAGGGATTGC 59 57822715 57822733 TCAAGCTTTGGTAAGTGCC 58 NA Rattus norvegicus 81 Smek1 ENSRNOG00000027773 ENSRNOT00000034961 2 1 1 85 6 125042144 125043216 CTATTACCACAAAGGGAGGAC 58 125042079 125042099 GTCTTCCTTGTCTTCATCCTC 58 NA Rattus norvegicus 81 Olr424 ENSRNOG00000007977 ENSRNOT00000010493 1 1 1 60 3 21130992 21131012 GTGTTAGTCACTCGTTTAACC 57 21130952 21130971 TGATGTCACAGAAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb6 ENSRNOG00000024786 ENSRNOT00000034927 1 1 1 80 3 9661336 9661872 CAGACAAGAATGGGAAGACAG 59 9661276 9661295 GGATGTTGTCTGTGTTGTGG 60 NA Rattus norvegicus 81 Olr554 ENSRNOG00000010035 ENSRNOT00000013319 1 1 1 60 3 75265936 75265959 CCTCTCATCATGAACAATAGTCTC 59 75265977 75265996 CTCCACTTATCCAACATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptges ENSRNOG00000006320 ENSRNOT00000045993 1 1 1 60 3 9736238 9736256 GAGTGACCCAGATGTGGAG 60 9728379 9728398 GTAGATCGTCTCCATGTCGT 59 NA DesignNoJunction Rattus norvegicus 81 Tas2r130 ENSRNOG00000005645 ENSRNOT00000007435 3 1 1 60 4 165746804 165746824 TGACAAGCTAATTCTGAGGAC 58 165746764 165746782 GAGGCTAAAGCATAGGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edar ENSRNOG00000028598 ENSRNOT00000030348 3 1 1 80 20 28190787 28190805 TTTCAGCTCACTCCTCCAG 59 28189422 28190746 CTTGACTTGAGAGCTCTTTGTG 60 NA Rattus norvegicus 81 Tas2r136 ENSRNOG00000029561 ENSRNOT00000052034 2 1 1 60 4 166978502 166978521 ACTTTGTATCCTTCAAGCCA 57 166978461 166978482 CCAGTTTGATCCTCCTATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pibf1 ENSRNOG00000009208 ENSRNOT00000036350 2 1 1 80 15 83608867 83627139 TTTCTCAAGAGCTTGACAGAG 58 83627179 83627199 GTCTCACAGACTCTATGAGGT 58 NA Rattus norvegicus 81 Pcdhga5 ENSRNOG00000027299 ENSRNOT00000027026 2 1 1 60 18 30842187 30842208 GAAAGTAGCCGACATAAATGAC 58 30842228 30842247 GGAAGTGGAATAGGAGGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asphd1 ENSRNOG00000027213 ENSRNOT00000055016 1 1 1 84 1 198381380 198381398 TTTCCGTTCTACTGCCTGG 60 198379974 198381332 ATCTTCAGACCCAGATGGC 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000077336 3 1 4 92 9 81576566 81577700 CATGAACTACGGCCATGAC 59 81576492 81576510 GTATGTCGGACTTTCCGGT 60 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000068251,ENSRNOT00000088955 1 2 2 122 1 82171918 82171937 TAAGAACCTTACAGGGCTGC 60 82172111 82172129 AAGAAGGTGCCATCCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Gc ENSRNOG00000003119 ENSRNOT00000004174 1 1 1 80 14 20277752 20277773 TGAGAAGGATAAAGTTTGCCAG 59 20277808 20278828 CTGCTGTATAGGATTAGTGATAGAG 58 NA Rattus norvegicus 81 RGD1564634 ENSRNOG00000029824 ENSRNOT00000046324 3 1 1 60 15 108956663 108956682 GCAAATTAAGGGCAAGACTC 58 108956705 108956723 GTGCTTGATGTGCTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dtx1 ENSRNOG00000050848 ENSRNOT00000074974 1 1 1 92 12 41413567 41413698 CCAATGGCAACAAGGATGG 60 41413754 41413772 ATTCCATCTTCCCAGGTGG 59 NA Rattus norvegicus 81 Itpkb ENSRNOG00000002969 ENSRNOT00000004032 3 1 1 80 13 98703386 98705758 GCATCAAGAAGGAAGATGGC 59 98705801 98705819 CTCTGAAGGCCTCAGTGAC 60 NA Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 3 2 2 80 10 47021784 47025671 GCTTATTGGCCTACAAAGAGTG 60 47025711 47025730 CTTGTATAGCGGCTGTAACG 59 NA Rattus norvegicus 81 Hba1 ENSRNOG00000029886 ENSRNOT00000051483 2 1 1 81 10 15603574 15603593 AACCAACATCAAGAACTGCT 58 15603397 15603530 AGCGAACATCCTCTGTAGG 59 NA Rattus norvegicus 81 Tmem74b ENSRNOG00000009635 ENSRNOT00000012765 2 1 1 60 3 147226633 147226651 AGGCCAGGTTCTAGTAGAG 58 147226675 147226693 CTGGGTGGTATAGCTGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 3 2 2 80 18 69742171 69742993 TTAGAAGCTGCAAAGGCAC 59 69742109 69742130 ATTAGCAAGTGATGGGTAAAGC 59 NA Rattus norvegicus 81 LOC100911027 ENSRNOG00000046250 ENSRNOT00000074549 1 1 1 88 1 54730525 54748640 GCCTGGAGATTGTACTTGG 58 54730455 54730473 AAACATGACCCATCCTTGC 58 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 3 2 2 80 17 87929036 87929055 GAGATCCCAGATGTCTTCGT 59 87927475 87928996 GATCACGCAAATGTGATTAAGG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900,ENSRNOT00000063902 2 2 4 82 13 80432632 80432650 TTACCTCTGTTGCGAACAC 58 80431160 80432588 GTGGAGTCTCTAAGAGTAGCT 58 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 1 1 1 63 4 10794823 10797179 AAGTGTACATTGCCATGGG 58 10797203 10797224 CATCACTATCTTTCCGACTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Csf2rb ENSRNOG00000000187 ENSRNOT00000000203 3 1 1 80 7 119563708 119563728 GTCCTATCCATTCATCCAGCA 60 119563769 119564588 TTCTCTGTCTTGCTGTCCTC 60 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 3 2 2 80 10 27145125 27145143 GTGCCAGTTGCAATTACAC 58 27142648 27145083 TCACGAGGATAACCATAACTG 57 NA Rattus norvegicus 81 Vgll4 ENSRNOG00000007822 ENSRNOT00000010338 1 1 1 88 4 146839025 146839045 GCTGTTTATGAAGATGGACCT 58 146806751 146838976 AAGCTTCACCTTCATAGCAC 58 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109,ENSRNOT00000077461 1 2 2 80 10 47543810 47543831 TATTGGAGCTTGGAACTATCCT 59 47543128 47543769 ACAATGGCAGCATTTCCTG 59 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109,ENSRNOT00000077461 2 2 2 80 10 47543810 47543830 ATTGGAGCTTGGAACTATCCT 59 47543127 47543769 AACAATGGCAGCATTTCCTG 60 NA Rattus norvegicus 81 Zfp111 ENSRNOG00000024376 ENSRNOT00000051473 1 1 1 94 1 81042336 81043333 AGTTACAGGAGGCAGTGAC 59 81042260 81042278 GTGGTACAGCTTCCTCTGG 60 NA Rattus norvegicus 81 Dapk3 ENSRNOG00000020383 ENSRNOT00000027634 2 1 1 81 7 11393753 11394388 GTCATCACCTACATCCTCCTG 60 11393692 11393710 CAGCCGAGATGTTTGTCAG 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000070848 1 1 10 80 15 32809126 32852784 AAGGTTATACCACATGTCACAG 58 32852824 32852843 GCAGAGGGTGATGTTATCAG 58 NA Rattus norvegicus 81 Ice2 ENSRNOG00000010160 ENSRNOT00000013742 1 1 1 80 8 75660347 75661839 AATTATGTAGCTTGCAGGAAGG 59 75661878 75661898 CTGAGGTCTTGTAGATCAGGA 58 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568,ENSRNOT00000090355 1 2 2 80 3 119376235 119376255 TATTACTGCCTCAATCGTTGC 59 119365161 119376193 TAGTCCATCACCTGGTAGC 58 NA Rattus norvegicus 81 AABR07009787.1 ENSRNOG00000050049 ENSRNOT00000075017 1 1 1 80 2 112364770 112364790 ATGGTCCTATGCTAAGGTTGG 60 112363037 112364081 TATACCATCTGCTGCTTAGAGTG 60 NA Rattus norvegicus 81 AABR07009787.1 ENSRNOG00000050049 ENSRNOT00000075017 2 1 1 80 2 112364768 112364786 TCCTATGCTAAGGTTGGCA 58 112363033 112364073 GGGATATACCATCTGCTGC 58 NA Rattus norvegicus 81 Olr519 ENSRNOG00000009852 ENSRNOT00000013060 2 1 1 60 3 74342356 74342377 CTCTTTGTTAGTTTAGGGACCA 58 74342317 74342337 ATCTGTCATATGCCATTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308065 ENSRNOG00000026918 ENSRNOT00000046664 2 1 1 80 11 88136211 88136229 CGTCACCCTCTGTCTACAC 60 88136272 88136789 TATCCAGTTTCTCCATCGGC 60 NA Rattus norvegicus 81 Tmprss11d ENSRNOG00000055991 ENSRNOT00000088552 3 1 1 80 14 23373785 23377430 CGAATGAGATAACATCACTCACTG 60 23378654 23378674 TTATAAGGTCTGGACGTGCTC 60 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000085925 2 1 2 93 6 44361989 44363881 CCGATTCATGGCGATTCAG 59 44361914 44361932 TCTGTTCAGAATGAAGCGC 59 NA InUTR Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769,ENSRNOT00000074991 2 2 2 80 19 119042 119706 TTAACTTCTATCGCAACCTGC 59 118982 119001 GCTTAAACTCCTTGCTCTCC 59 NA Rattus norvegicus 81 LOC102552796 ENSRNOG00000027296 ENSRNOT00000027019 2 1 1 60 18 30858109 30858127 CACTGACAGAGGAACACCA 59 30858151 30858169 GTCTGCCACATCTAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564571 ENSRNOG00000042795 ENSRNOT00000001348 2 1 1 80 12 2782501 2782519 ATAGGGCTGTCAGACTCAC 59 2781200 2782459 AGACCAATAGTTCCTCCACTG 59 NA Rattus norvegicus 81 Pan3 ENSRNOG00000000942 ENSRNOT00000044134 2 1 1 80 12 9238411 9238429 TGTTGCTTACATGCAACCC 59 9237098 9238368 TGTCTGTTGATCAGCTCCTG 60 NA Rattus norvegicus 81 Lgals3bp ENSRNOG00000003217 ENSRNOT00000004320 2 1 1 81 10 107419336 107420592 TCTGCTCCAACGATTCCAG 60 107419273 107419291 CTGTCAAAGATCTGGCCCA 60 NA Rattus norvegicus 81 Ttc30a1 ENSRNOG00000052519 ENSRNOT00000013565 2 1 1 60 3 62801400 62801420 ATACGGTCACTTATGAGTCCA 58 62801360 62801378 TTCCACCCTATGATCTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lag3 ENSRNOG00000021334 ENSRNOT00000028965 1 1 1 80 4 157425899 157426183 GGAGAAGACAGTTGCTACG 58 157425837 157425857 CCTCTATCTTACTCTGAACCG 57 NA Rattus norvegicus 81 Dock2 ENSRNOG00000006932 ENSRNOT00000059810 1 1 1 80 10 19542848 19545056 AAGAAACGTGCAAAGACCA 58 19542786 19542804 CAAAGACGTAGAGGCTGTG 58 NA Rattus norvegicus 81 Zfp74 ENSRNOG00000046937 ENSRNOT00000072689 1 1 1 80 1 87820696 87820941 AACTTAATCACAGTTGGCCC 59 87820635 87820653 CACTACACATGGCTCTTCC 58 NA Rattus norvegicus 81 Olr947 ENSRNOG00000046083 ENSRNOT00000010865 1 1 1 87 7 8452396 8452416 ACTTTGCATTTGTCACTCTG 57 8452466 8452484 GATGGGAACCTCAGAATGG 58 NA Rattus norvegicus 81 Hs3st3a1 ENSRNOG00000024591 ENSRNOT00000033737 1 1 1 60 10 50928366 50928387 AGTATCTTCAGGAAGTTCTTGC 58 50928407 50928426 AGAAGACGTAGAGGGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap1s3 ENSRNOG00000049873 ENSRNOT00000072160 3 1 1 81 9 85393970 85404428 ACTTTGGAAATGTCTGTGAGC 59 85393909 85393932 CCACCTATTATAAACTCGTCAAGG 59 NA Rattus norvegicus 81 Olr866 ENSRNOG00000050435 ENSRNOT00000046941 3 1 1 60 5 137845554 137845574 TCAACCCTGTGGTCTATAGTC 59 137845514 137845532 ATCACCTTGAGAAATGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf8 ENSRNOG00000017869 ENSRNOT00000024069 1 1 1 80 19 54332394 54332412 TAGACCCAACAAGCTGGAG 59 54332456 54334314 TAGAACTGCTGCAGGTCTC 59 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163,ENSRNOT00000065644 3 2 2 80 15 3965815 3965834 ATGTTGACCATAAACCCTGC 59 3965877 3969640 CACTGTTGACCGTTGACAG 59 NA Rattus norvegicus 81 Efna1 ENSRNOG00000020573 ENSRNOT00000027920 3 1 1 80 2 188593019 188596015 GTTCAAATCCCAAGTTCCGA 59 188592958 188592976 AATGTGGGCAGATGATGTC 58 NA Rattus norvegicus 81 Gpr18 ENSRNOG00000012628 ENSRNOT00000016848 2 1 1 83 15 108324291 108326728 GACAGGAGTTTCTACGTACC 58 108324227 108324245 ATTGGAAAGAGCAAGCTGG 58 NA InUTR Rattus norvegicus 81 Gpr18 ENSRNOG00000012628 ENSRNOT00000016848 3 1 1 83 15 108324290 108326728 GACAGGAGTTTCTACGTACCA 59 108324227 108324245 ATTGGAAAGAGCAAGCTGG 58 NA InUTR Rattus norvegicus 81 Gskip ENSRNOG00000042427 ENSRNOT00000006307 3 1 1 94 6 129519787 129532669 GCTCGCAGAATGGAAACAG 60 129532727 129532745 TCTGTTCCTTCAAACCCGT 59 NA Rattus norvegicus 81 Amt ENSRNOG00000050214 ENSRNOT00000073559 2 1 1 80 8 117077627 117077744 GCAGTGATTGGTACAGTGAC 59 117077787 117077805 CTTGAAGGCCACATAACCC 59 NA Rattus norvegicus 81 Acbd7 ENSRNOG00000016480 ENSRNOT00000064609 1 1 1 107 17 78905877 78906001 CAACATTGCATGTCCAGCA 60 78905596 78905614 GAAATGTAGGCACCCATGG 59 NA Rattus norvegicus 81 Traf1 ENSRNOG00000048914 ENSRNOT00000072400 2 1 1 80 3 14005352 14005370 CCTGTCCCTGTTCATTGTC 58 14004155 14005309 ATAAAGGTGACCTTGTTCCG 58 NA Rattus norvegicus 81 Hrct1 ENSRNOG00000039336 ENSRNOT00000060282 2 1 1 60 5 59228304 59228323 TCACAGGAACATGATGTGGA 59 59228346 59228364 CGTAGAAGAGTCTAGGCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aplnr ENSRNOG00000009227 ENSRNOT00000012379 2 1 1 60 3 72541253 72541271 TTCCGTTCCACTGACATCC 60 72541292 72541313 TAGAGTAGTCCATGTAGCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 A4galt ENSRNOG00000009736 ENSRNOT00000012914 2 1 1 122 7 124087450 124089372 TGACAAGTCAATCCTTATGGG 58 124087348 124087366 ATGAAGAGGGTGAAGACCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr153 ENSRNOG00000017214 ENSRNOT00000023124 2 1 1 60 1 169562645 169562664 ATACACTACCATCCTCACCC 58 169562686 169562705 CCTGCTGATAATCACCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1408 ENSRNOG00000047426 ENSRNOT00000040534 1 1 1 60 10 36517945 36517966 GATCTACATACGACCTCCAGAC 60 36517986 36518005 AAACATGATGGTGGCTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000052376 2 1 2 66 1 89953327 89953346 ATCAAGCAATGTGTCGACAG 59 89953375 89954142 TTTCGACCAAACTGGTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Actl7a ENSRNOG00000016641 ENSRNOT00000022395 3 1 1 60 5 73496152 73496170 AAGCTAGTGACCAGACCTC 58 73496194 73496212 CCATCTCTTAGGGAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef2 ENSRNOG00000020266 ENSRNOT00000047450 3 1 1 80 7 11404632 11404650 CGTGGAGAACGTCAATGTC 59 11404378 11404591 ACAGGATCGATCATGATATTGC 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925,ENSRNOT00000026009,ENSRNOT00000078789 3 3 3 80 1 143183958 143185530 ATTTGATTTCAAGCCTTCGC 58 143183897 143183915 TCTTTAGAGGGTCTCTGGG 57 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394,ENSRNOT00000000683 3 2 2 80 20 30795386 30795407 GAAGAATTTAAAGGACCTGGCC 60 30795448 30799160 TCGTCCTTCTGCTCATTGG 60 NA Rattus norvegicus 81 Taar3 ENSRNOG00000025982 ENSRNOT00000035539 3 1 1 60 1 22570087 22570106 CAACTTCCTGATCCTCTCCA 59 22570046 22570065 AGGCATGATGACAAATCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090,ENSRNOT00000085684 3 2 2 80 7 40301833 40304641 AAAGTAGCACACCTGATTCTG 58 40304682 40304701 TTTCTGGCTCTGACTTTCTG 58 NA Rattus norvegicus 81 Camta1 ENSRNOG00000042627 ENSRNOT00000067481 2 1 1 81 5 168991239 168991259 CGTTTCCCAAAGTGTATTCTG 58 168985535 168991201 GTTCCCATGATCATCTTCTATAGG 59 NA Rattus norvegicus 81 Hmgb4 ENSRNOG00000032889 ENSRNOT00000044868 1 1 1 60 5 146445836 146445854 GAGAAGAAAGAGGGACCCA 58 146445794 146445812 GGAGAAGAGCAGGAAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase17 ENSRNOG00000050295 ENSRNOT00000048941 3 1 1 60 15 28204556 28204580 CACATCTATAATAGGGCTTATCCAC 59 28204520 28204539 TGAATCTGTTTCTGTGTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd2 ENSRNOG00000018788 ENSRNOT00000025391 2 1 1 80 7 11937959 11937978 TGGCTACTACTTCCACTGAG 59 11938020 11938717 CTGAGTACAGGAACTTGAGC 58 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 1 2 2 80 1 198411417 198411929 CATCTGCACAGTTCTGTGG 59 198411973 198411991 GTAGATTCGAAGCACAGGG 58 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720,ENSRNOT00000084739 3 2 2 81 19 43347531 43347549 TAGCACGTTACCTGAAGGG 59 43347592 43348068 TCAGGGACATACACCATAGTG 59 NA Rattus norvegicus 81 Rn60_10_0291.1 ENSRNOG00000042335 ENSRNOT00000068358 3 1 1 60 10 29246128 29246146 GAAGATGAGATTGACCGCC 58 29246169 29246188 GCCGTTTGATTTGTTTCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec31b ENSRNOG00000025781 ENSRNOT00000035758 1 1 1 80 1 264287413 264287630 CTTTAATCCTTTCCAGGGCA 58 264287352 264287370 GTCAGGTGGTTCAAATCCC 59 NA Rattus norvegicus 81 Nid1 ENSRNOG00000002461 ENSRNOT00000003349 3 1 1 80 17 90588890 90588908 AGATTCCCTATGGTGCCTC 59 90585689 90588847 AGGAGGAAGTGATCACTGAG 59 NA Rattus norvegicus 81 AABR07065353.1 ENSRNOG00000037891 ENSRNOT00000057577 3 1 1 82 6 123362004 123362022 CTAGAGCCTCACACTTGTG 58 123362067 123376548 AGAATAATCTTGGTGCTGGG 58 NA Rattus norvegicus 81 LOC100359777 ENSRNOG00000043422 ENSRNOT00000064181 3 1 1 80 10 31617889 31618728 CCCAACTGTCATACAGTGC 59 31620289 31620307 ACATGGAAGGAAACTGAGC 58 NA Rattus norvegicus 81 Il21r ENSRNOG00000015773 ENSRNOT00000021690 2 1 1 80 1 197021632 197023146 GGGAACTTCAAGAAATGGGT 58 197023189 197023207 AACTGATGTTGTGGGACTC 57 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 3 2 2 80 10 47721205 47721223 TGTTACCTCCTTCCTGCTC 59 47721043 47721163 GAAGTCATCTTCTGTGTTGCC 60 NA Rattus norvegicus 81 Fscn3 ENSRNOG00000007942 ENSRNOT00000063987 1 1 1 80 4 55722456 55723299 GTCATCTATGATGCCGAGGT 60 55723340 55723360 CTCGCTGTCACATTCATACTG 59 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 3 2 2 80 2 195668729 195670514 GACGTCTATGTTTGAAATTCCC 58 195670554 195670573 TCAGAAGCAGAAACGTAGAC 58 NA Rattus norvegicus 81 Snrpb2 ENSRNOG00000004967 ENSRNOT00000006900 1 1 1 80 3 137145244 137146696 CCAAATCCTCAGGTCCCTG 60 137146736 137146758 CATCATCTCATTCGTCTCTTCTG 59 NA Rattus norvegicus 81 Ncapd3 ENSRNOG00000008932 ENSRNOT00000012078 3 1 1 80 8 28119174 28121126 CACTCTGGGTAAACTCTGCT 60 28121168 28121187 CAGACTTCAAGTTCTCGCAC 59 NA Rattus norvegicus 81 AABR07017900.1 ENSRNOG00000054909 ENSRNOT00000072382 2 1 1 73 15 32355640 32355658 TTACTCCTAGGCCTTCACC 58 32355830 32355848 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950,ENSRNOT00000066336 2 2 2 80 18 71086693 71102034 ACTCCACTCCTGGATATCAC 58 71102077 71102095 GAAGAGCTGACAGGAAAGG 58 NA Rattus norvegicus 81 Olr1640 ENSRNOG00000048857 ENSRNOT00000047436 1 1 1 60 15 28806182 28806202 CTGTTCTGAAACTAGCCTGTG 59 28806142 28806160 ATGTCCACAAAGGTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glrb ENSRNOG00000010199 ENSRNOT00000014170 1 1 1 80 2 179781564 179785463 CTATAAAGGCACTGGTTACTACAC 59 179781507 179781526 ACACCCATCATGTAGAACCC 60 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773,ENSRNOT00000014060 3 2 2 80 3 2451102 2451272 TCATCATCCAGCTGGATAGC 60 2451041 2451059 ACCAGTGCTTAATCAGGCT 59 NA Rattus norvegicus 81 LOC100364191 ENSRNOG00000030447 ENSRNOT00000041753 2 1 1 60 5 173149095 173149114 AGTGTGGAGTTATAAGCCCT 58 173149136 173149155 TTCTGCCACTTCTCTAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000738.1 ENSRNOG00000052999 ENSRNOT00000049208 3 1 1 61 1 24891312 24891330 CCTGAGGTTTCTGACAGAG 57 24890080 24890101 AATATGGATTTGGCCTGAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Car7 ENSRNOG00000012371 ENSRNOT00000016521 2 1 1 80 19 637307 637785 ATCTCTGAGAGGCAGATGG 58 637245 637264 GTTGTTCACCATGTGAATCC 57 NA Rattus norvegicus 81 Hist1h2bk ENSRNOG00000055512 ENSRNOT00000089643 3 1 1 62 17 44527652 44527670 GGTGCTGAAGCAAGTACAC 59 44527608 44527626 GAGTTCATGATGCCCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj13 ENSRNOG00000016057 ENSRNOT00000021507 3 1 1 81 9 94487893 94489992 TTTATCACAGGTGCCTTTGTG 59 94487832 94487853 CAACTGCTAAGTCTGTGAATCG 60 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515,ENSRNOT00000019577 2 2 2 80 19 42136570 42136588 AGAACTATAGGCACCACCG 59 42136081 42136526 CATTGGCAAGCTTCTGCTC 60 NA Rattus norvegicus 81 Taf2 ENSRNOG00000034022 ENSRNOT00000040836 2 1 1 80 7 94711033 94712110 AGAACCCTTTCTCAAGTTCTC 58 94710973 94710991 GATGGGAAATGAAGGCCTG 59 NA Rattus norvegicus 81 Fbxo44 ENSRNOG00000009298 ENSRNOT00000067059 1 1 1 80 5 164968134 164968245 GACTTCCTATTACACCTGCCT 59 164968074 164968092 GTGGTGTCCATCAGTTCCT 59 NA Rattus norvegicus 81 Sec61g-ps1 ENSRNOG00000049451 ENSRNOT00000072285 3 1 1 82 5 56771356 56771375 GTGAAACTGATCCACATCCC 59 56769525 56769543 ATCAGATCCGAGGGAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537,ENSRNOT00000055333 3 2 2 81 10 86685831 86686144 AATGTTCTGCTGGCATGTC 59 86685768 86685787 AGAAGTCTTCCCAGATCTCC 58 NA Rattus norvegicus 81 Sec1 ENSRNOG00000021014 ENSRNOT00000028522 1 1 1 60 1 101664149 101664167 CTCCTGGACCTTCTACCAC 59 101664107 101664125 GTCATGCAGAGTGAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem234 ENSRNOG00000049326 ENSRNOT00000074235 3 1 1 80 5 147805594 147810946 CGTTGGCATCAACAGATCTG 60 147810988 147811007 CCTTCCCAACAATCAGTGTG 59 NA Rattus norvegicus 81 RGD1311756 ENSRNOG00000004442 ENSRNOT00000005903 1 1 1 80 6 124848733 124848754 TGAAGAAGCACATCAGAAATGG 59 124848792 124865050 AGTTAGAAACACCAGCAATGAC 59 NA Rattus norvegicus 81 Il34 ENSRNOG00000017602 ENSRNOT00000023823 2 1 1 80 19 40890942 40896446 GGTTATACTGTCTTGGGATCC 58 40896487 40896506 CTTTATCTTGGGCCAGAGTC 58 NA Rattus norvegicus 81 Rpl23 ENSRNOG00000004107 ENSRNOT00000005471 1 1 1 80 10 85721519 85721626 GGCGAGATGAAAGGTTCTG 59 85721457 85721475 TGCATTGGATGCAATCCTG 59 NA Rattus norvegicus 81 Olr1436 ENSRNOG00000046642 ENSRNOT00000075204 2 1 1 60 10 44877539 44877558 GGACACCTTTCTCTTCACAG 58 44877498 44877516 GATGTTGCCTATGAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r82 ENSRNOG00000060630 ENSRNOT00000073173 1 1 1 60 4 88120502 88120520 CTGAAGAAAGAGCCACCCA 60 88120539 88120562 CAGTACATGACTACAAAGAAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsen54 ENSRNOG00000004598 ENSRNOT00000006327 2 1 1 80 10 104360362 104360382 TACCACTGTCTATCCAAGAGG 58 104360423 104361680 GGCTGAAGACCTGATATTGC 59 NA Rattus norvegicus 81 AABR07001348.1 ENSRNOG00000023081 ENSRNOT00000031519 1 1 1 80 1 39708851 39709538 AAGGAAATGCCAAGATCAACAG 60 39708792 39708812 ATTCCCTGTAGGTGGAATCTG 59 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309,ENSRNOT00000011592 3 2 2 80 X 1712596 1712616 GAAGCTGACACTCAATAGTCC 59 1712451 1712554 AAGCCAATCTCAGACAAGC 58 NA Rattus norvegicus 81 Mir217 ENSRNOG00000035518 ENSRNOT00000053641 3 1 1 60 14 113119563 113119581 TGCATCAGGAACTGACTGG 60 113119604 113119623 CTGAAGGCAATGCATTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910046 ENSRNOG00000018885 ENSRNOT00000032933 2 1 1 83 1 84584754 84584773 TCACCTTACTAGAGCAGGAG 58 84584819 84592419 AACATGTCTCCAAACCTGG 58 NA InUTR Rattus norvegicus 81 Olr839 ENSRNOG00000049174 ENSRNOT00000047909 2 1 1 60 5 59313637 59313655 TTGTCCTATTGGGCCTCTC 59 59313595 59313613 AGGATGAGCACGAAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 2 3 3 84 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63080 63098 GCAACTGAACAGTGAGAGG 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076235 3 1 3 61 X 72509809 72509830 CAAGAAGAATCATCCTATTGGC 57 72509769 72509788 GCCAAAGAACTGTATCATGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr1 ENSRNOG00000008223 ENSRNOT00000010850 2 1 1 115 5 49311090 49311108 CATTTCAAGCAAGGAGCAC 58 49327749 49327767 AAGGCCATCTAGGATCGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zp3 ENSRNOG00000001434 ENSRNOT00000001952 2 1 1 80 12 23736459 23736477 CTCCAGCTAACCAGATCCC 59 23736269 23736416 CCTCTACTGGTGACCAACTC 60 NA Rattus norvegicus 81 Enkd1 ENSRNOG00000024364 ENSRNOT00000031033 2 1 1 83 19 37670984 37671093 CAATCTGCTTCAGAGCCAG 59 37670919 37670937 TAACCCTGAGCTCTCAGAG 58 NA Rattus norvegicus 81 Enkd1 ENSRNOG00000024364 ENSRNOT00000031033 3 1 1 83 19 37670982 37671092 AATCTGCTTCAGAGCCAGAG 60 37670918 37670937 GTAACCCTGAGCTCTCAGAG 59 NA Rattus norvegicus 81 Atp8b3 ENSRNOG00000024975 ENSRNOT00000039813 1 1 1 80 7 12061038 12061056 ATCTTCACGAGCCTCACTG 60 12061099 12061224 ATTGTAGTCAGCGAACAGGA 59 NA Rattus norvegicus 81 Mrrf ENSRNOG00000025997 ENSRNOT00000033047 2 1 1 80 3 15468887 15468908 TGACCATATACAGTACTCAGCC 59 15468949 15475333 CCTTTCCCTTTGGCTTTGG 59 NA Rattus norvegicus 81 AABR07002774.2 ENSRNOG00000048765 ENSRNOT00000025581 2 1 1 80 1 84680652 84680670 TGCTACTCAGAAGGTCCTC 58 84680711 84685105 GATGGAAGTTCTACATCCACTG 59 NA Rattus norvegicus 81 AABR07002774.2 ENSRNOG00000048765 ENSRNOT00000025581 3 1 1 80 1 84680654 84680675 CTACTCAGAAGGTCCTCTACAG 59 84680713 84685107 GAGATGGAAGTTCTACATCCAC 58 NA Rattus norvegicus 81 Avl9 ENSRNOG00000013314 ENSRNOT00000018425 1 1 1 80 4 87039037 87039057 CCTCATTAGAAGGATCACAGG 58 87040125 87041027 GGATCAAGACCTTGTGTCG 58 NA Rattus norvegicus 81 Acsm3 ENSRNOG00000032246 ENSRNOT00000020039 2 1 1 80 1 189529046 189529301 CCATCTTGCAAACCCTCTC 59 189529343 189529363 CATTCTGTATAAGCATCCGGT 58 NA Rattus norvegicus 81 LOC100910934 ENSRNOG00000049893 ENSRNOT00000071612 2 1 1 60 18 55392269 55392287 CCCTTCACTGACCTTCCTC 59 55392309 55392329 GAACTTCAGGCATTTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1602 ENSRNOG00000022063 ENSRNOT00000033697 2 1 1 60 13 92504897 92504916 GCACACCACATATCAATCAC 57 92504939 92504957 TCACAGGAGACATTGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 1 3 3 80 14 34733644 34733664 TGATACTGGAGCCTACAAGTG 59 34733702 34736976 GACCTGTGATCTTGAACATAGAC 59 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 2 3 3 80 14 34737087 34737330 CACTTTGTGCTAGGTATCCA 57 34737372 34737391 TAGTAAAGCCTTTCTCGCTG 58 NA Rattus norvegicus 81 Nmt2 ENSRNOG00000026248 ENSRNOT00000030228 3 1 1 80 17 78933772 78933790 GGAACCGTATTCTTTGCCA 58 78933625 78933729 GTGTACAACTCCTTGAGCAC 59 NA Rattus norvegicus 81 Galnt5 ENSRNOG00000004645 ENSRNOT00000006319 1 1 1 80 3 44041887 44044083 TTCAGCACCAAAGACTACCT 59 44044126 44044144 CTTGAGGCGAAGAATCCGA 60 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811,ENSRNOT00000007371 2 2 2 80 6 33194471 33194489 CTGCAAGTGTCCTCATCTG 58 33194533 33195015 CTCTGCCTGAATATTGGCT 57 NA Rattus norvegicus 81 AABR07019870.1 ENSRNOG00000038033 ENSRNOT00000057873 2 1 1 60 13 5480531 5480551 GCTGCAAAGAAACTAGGAGAG 59 5480572 5480591 CATAGAGCTGCTTGTCAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mogat3 ENSRNOG00000029211 ENSRNOT00000050456 2 1 1 80 12 22709731 22709749 ACATTTACTCATGCTGCCA 57 22709530 22709689 TCAGAAGAGACTAAACCACTG 57 NA Rattus norvegicus 81 Rgn ENSRNOG00000007949 ENSRNOT00000010984 1 1 1 80 X 1837692 1837713 CTTCTACTACATTGACAGCCTG 59 1835739 1837651 CTGCGGTTGGAAATCTGTC 59 NA Rattus norvegicus 81 Mir152 ENSRNOG00000035539 ENSRNOT00000053662 1 1 1 60 10 84719331 84719350 CCAGGTTCTGTGATACACTC 58 84719372 84719391 CCAAGTTCTGTCATGCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir152 ENSRNOG00000035539 ENSRNOT00000053662 2 1 1 60 10 84719332 84719351 CAGGTTCTGTGATACACTCC 58 84719374 84719392 CCCAAGTTCTGTCATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc8b ENSRNOG00000047867 ENSRNOT00000071381 2 1 1 82 8 117233642 117233985 AGATCTACGTCCTGGGAGG 60 117233578 117233596 GGTCCATGTACGTGTCTCC 60 NA Rattus norvegicus 81 Klhdc8b ENSRNOG00000047867 ENSRNOT00000071381 3 1 1 83 8 117233642 117233985 AGATCTACGTCCTGGGAGG 60 117233577 117233595 GGGTCCATGTACGTGTCTC 60 NA Rattus norvegicus 81 Tldc2 ENSRNOG00000006395 ENSRNOT00000008386 2 1 1 80 3 153200104 153200123 ATACCGACAAATGGAGGGTC 60 153200165 153202675 GAGAAGGCACCAAACATCTG 59 NA Rattus norvegicus 81 Upk3b ENSRNOG00000023686 ENSRNOT00000037639 2 1 1 81 12 23681967 23682142 CCTGAGTCTAGACCTGATTCC 59 23681906 23681924 AGAGAACGTAGTGGCTGTG 60 NA Rattus norvegicus 81 Lima1 ENSRNOG00000059801 ENSRNOT00000091702 2 1 1 81 7 141494713 141494734 GTAACAGCCAAAGAACTTTCTC 58 141477762 141494672 CTGCTTTCTGGTACTTGGAG 58 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000071735 3 1 2 83 6 129423254 129423272 CACTGTTCTTGGAAGCGAC 59 129423317 129425980 GTTGAACATTTCAATGCCCAG 59 NA Rattus norvegicus 81 Casc3 ENSRNOG00000009716 ENSRNOT00000013204 1 1 1 80 10 86734412 86734433 CTTTATGGCTATGACATTCGGT 59 86734473 86734632 ACTTCCAAATCGAGGTTTCC 58 NA Rattus norvegicus 81 AABR07027458.1 ENSRNOG00000049193 ENSRNOT00000074609 2 1 1 60 17 31947704 31947722 CCTGCTTATCAGCATTGGA 58 31947662 31947680 TACCAGGCTCTGACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922,ENSRNOT00000077754 3 2 2 80 5 124526721 124526740 ATCGACATCATTCAGAGCAG 58 124526781 124533645 CTCCACATATCCACTCTTACC 57 NA Rattus norvegicus 81 LOC102552732 ENSRNOG00000023397 ENSRNOT00000031916 3 1 1 80 14 22870895 22870914 CTAACTGCTCAACAGCTACC 58 22869120 22870852 TTACAGAGCCCTCTACAGC 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000046466 ENSRNOT00000071822 3 1 1 92 15 29993491 29993604 CTTTCTTCTGAGAGTTGCCC 59 29993418 29993436 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 LOC498555 ENSRNOG00000038074 ENSRNOT00000057931 3 1 1 60 15 75067627 75067649 ATGAGAAGAAAGAGGAGTCTGAG 59 75067667 75067687 TAATCAAACAGGCCAAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcne3 ENSRNOG00000017054 ENSRNOT00000048437 1 1 1 83 1 165190033 165195860 CAGAGTCAGATCACATTCCAG 58 165195905 165195923 TTGTACCAGGTCTCAGTCC 58 NA InUTR Rattus norvegicus 81 Aqp11 ENSRNOG00000013358 ENSRNOT00000018091 3 1 1 83 1 162703708 162705919 TTCTCTAGGCGTACTGCTG 59 162703643 162703664 TCCTTCTTGTTACTCAGTTGGT 59 NA Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043,ENSRNOT00000086432 1 2 2 80 6 52148402 52148420 GTCGAGAAGTACAGAGGCA 59 52148459 52149853 ATATCTAAGACCTTCAGGACAGTG 60 NA Rattus norvegicus 81 Tlr6 ENSRNOG00000002161 ENSRNOT00000002933 2 1 1 85 14 45039976 45039996 CAACATTCCCAGTAGATACCA 57 45040040 45042083 AGTTCTTTCCCTTCTCAATAGG 58 NA Rattus norvegicus 81 Ftmt ENSRNOG00000014988 ENSRNOT00000020109 1 1 1 60 18 47294696 47294714 AGTATTTCCTTCGCCAGTC 57 47294737 47294756 TGCAGTCTCATAAGCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftmt ENSRNOG00000014988 ENSRNOT00000020109 3 1 1 60 18 47294885 47294903 ACTTGCATACTCTGGCCTC 60 47294925 47294945 TGAGTTTCCAGAAAGTCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf19 ENSRNOG00000020897 ENSRNOT00000028373 3 1 1 80 1 226955910 226956065 CAACAACTTTGAGGTGAAGTC 58 226956105 226956125 TAGATCTGGACATCTGTACCC 58 NA Rattus norvegicus 81 Dnajc2 ENSRNOG00000012392 ENSRNOT00000016909 3 1 1 81 4 9904627 9904646 TGGTCAGAAGATGATCTGCA 59 9904689 9905575 CAATGACTTCCCATCTGGAG 58 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829,ENSRNOT00000071595 2 2 2 80 10 51532479 51532497 CTTATCTCCGAGAGTTGCC 57 51527176 51532436 GCTCCTGGATATTAGAAGCC 58 NA Rattus norvegicus 81 Zfp687 ENSRNOG00000021026 ENSRNOT00000028553 2 1 1 81 2 196174551 196174571 TGTTTAAGTGCCCATCTTGTC 59 196174337 196174512 CCAGACTGATGAGTATTCTTGAG 59 NA Rattus norvegicus 81 AABR07050391.2 ENSRNOG00000058695 ENSRNOT00000071103 2 1 1 60 5 163612631 163612649 CAAAGGAACTCTGAGGAGG 57 163612671 163612691 CTTTCCAAGAAGACTCAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 1 2 2 80 4 160536060 160536079 CATCGTCCTGTTGATCATCC 59 160535756 160536017 TTCTCGTTCACCTTGTCCA 59 NA Rattus norvegicus 81 Wbscr28 ENSRNOG00000001474 ENSRNOT00000033499 3 1 1 81 12 24807198 24807216 TGGTACTGCTGCTAACCTG 59 24807260 24807995 AGCATAGAACTCTGGCTGTG 60 NA Rattus norvegicus 81 Gata2 ENSRNOG00000012347 ENSRNOT00000017240 3 1 1 81 4 120140185 120140671 CAAGCTGCACAATGTTAACAG 59 120140713 120140732 GGATTTGCTGGACATCTTCC 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000085124,ENSRNOT00000019265 2 4 9 60 9 81548478 81548496 AGGAGGAAGCACTGTTGAC 60 81548518 81548538 TGAAGGGCTACGATTATCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exd2 ENSRNOG00000027707 ENSRNOT00000033378 1 1 1 80 6 104032908 104032929 ACTTCTACAGGATTATGGCCTC 60 104032970 104037567 AGTACACTGTTTCCCTGCT 59 NA Rattus norvegicus 81 Ift22 ENSRNOG00000031346 ENSRNOT00000046412 1 1 1 80 12 22806601 22807091 GACTCCAAGTTTGAGTCCTG 58 22806540 22806560 TGGGATATCAGCATTGAAGAC 58 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587,ENSRNOT00000031236 1 2 2 80 1 91682988 91683007 ATCGCCTGAATGTAGAACTC 58 91683047 91685710 GGCCTTCAATATAGGAACTCTC 58 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587,ENSRNOT00000031236 2 2 2 80 1 91682531 91682550 AGCTGAAGCTCAAGATAGTG 57 91682592 91682915 GTGTGACTACTTCCTGAGAG 57 NA Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 1 2 2 80 8 59605065 59605083 GGCTAATGTGTCCCATCCA 60 59604898 59605024 ATCTGGTTTACTTCATCCACCT 59 NA Rattus norvegicus 81 Srsf5 ENSRNOG00000005513 ENSRNOT00000007583 1 1 1 80 6 104612772 104612790 GGTGGAAGAGGTAGAGGAC 59 104612834 104613032 TACAGGTGGAGCATTTCGT 59 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 3 2 2 80 1 89315325 89316133 CGGAATATGGGTGACTATGAG 58 89315265 89315283 AAACTGAACCAGCTCTGAG 57 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 2 2 2 80 1 218719385 218725552 CAGATCTAGTTACAACCTGCC 58 218719325 218719343 AATCCTGTGAGAAACCCGT 59 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600 2 1 2 108 14 77332466 77332487 ACATTTGTGGGAAACACTTCTC 60 77338425 77340518 GCTGCAAACCTCTTTCCAC 60 NA Rattus norvegicus 81 Usp18 ENSRNOG00000037198 ENSRNOT00000056174 1 1 1 80 4 153812496 153812518 GAGAAGAACATGAAGAGGAAGAG 59 153812557 153813604 TAACCCAACGAAACCATGAG 58 NA Rattus norvegicus 81 LOC100271845 ENSRNOG00000042706 ENSRNOT00000066652 1 1 1 60 1 196737892 196737913 ATTGTCCAGTTTAGAGAACCAG 58 196737931 196737952 CTTCTGAATGATTGCTGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC098125.1 ENSRNOG00000012898 ENSRNOT00000017200 2 1 1 94 1 229835047 229835068 TGCATTCATACTTGGGACTG 58 229835124 229835143 CCAGGTTCCCAATTAGTGTG 59 NA Rattus norvegicus 81 LOC100909423 ENSRNOG00000046510 ENSRNOT00000071070 1 1 1 60 3 158985593 158985613 TTCATTGACCTCTGTTACTCC 58 158985553 158985571 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360260 ENSRNOG00000030902 ENSRNOT00000066349 3 1 1 60 4 162497918 162497937 ATGTAGTGAATGGGAAGGTG 57 162497877 162497896 TTATCAGCATCTGTGAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980 3 1 2 96 20 25992704 26161909 CCAGGGAATGTGAGATACCT 59 26161968 26161986 AGGAGTTCATGATGGACCC 59 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 3 2 2 80 4 162399102 162400132 AACAAATTGCTTCCCATCCG 60 162400172 162400193 TATGTAGTCTCTGCTACTGCTG 59 NA Rattus norvegicus 81 Zfp648 ENSRNOG00000031569 ENSRNOT00000050365 2 1 1 60 13 71656734 71656753 CTTGGAGAGTGAAGAAGAGG 57 71656774 71656794 AGTGTTGTTCTGAGTTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686442 ENSRNOG00000016952 ENSRNOT00000022747 1 1 1 148 7 12171235 12171253 TCAGCAGATTTCTAGGCCC 59 12174386 12174404 CTTGCCATTGATGTACGGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC685963 ENSRNOG00000048701 ENSRNOT00000044141 2 1 1 60 3 164002576 164002594 TAAAGTTCAAGGTCCGCTG 58 164002615 164002636 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gareml ENSRNOG00000048004 ENSRNOT00000074348 3 1 1 90 6 27635403 27635422 ATACTTCAGCAGTGTGGAGG 60 27634826 27635350 TGACACCACCTTGACACTG 60 NA Rattus norvegicus 81 Mif ENSRNOG00000006589 ENSRNOT00000008608 2 1 1 73 20 13732611 13732629 CAACTACAGCAAGCTGCTG 60 13732666 13732806 AGTTGATGTAGACCCGGTC 59 NA DesignRelaxed Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 3 3 3 82 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 3 1 1 61 12 24723036 24723174 TTAGCTCGGTTGTCAAGGA 59 24722993 24723011 CACCTCCACCAGGTTAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Olr47 ENSRNOG00000018501 ENSRNOT00000024948 1 1 1 60 1 167769465 167769483 CATGCGGTTCTCACATCTG 59 167769423 167769442 AGAGACGAGACAGCAATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1601 ENSRNOG00000003560 ENSRNOT00000004728 2 1 1 60 13 92412959 92412978 AGTTATGGCCTATGATCGCT 59 92413000 92413019 CATGAGACTAGGGTAACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 1 2 2 81 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819206 109819226 CTGCTTCTCATTCTTCAGCTC 59 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 1 2 2 80 3 11366301 11366320 ACTTATGAACTGTCAGGTGG 57 11366113 11366260 AAACTCCATCTTAACCAGCTC 58 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000018291 ENSRNOT00000024691 1 1 1 89 8 16329668 16333387 ATTACTTGGCATGACAGCC 58 16333440 16333458 TAGGCCAGGTACAAAGACC 59 NA Rattus norvegicus 81 RGD1559951 ENSRNOG00000003227 ENSRNOT00000004303 2 1 1 64 X 11748873 11749493 CTGCTTGGACTTCAGTTCC 59 11748827 11748845 CGTTGATCCCAAGATTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989,ENSRNOT00000071215 3 2 2 136 3 172424588 172424609 CATGTTAATGGGTTTAACGGAG 58 172433196 172433309 GCCACAATGGTTTCAATGG 58 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 1 2 2 80 7 12274713 12274732 CTTAAGACAGGAGCTGAGGG 60 12274485 12274670 TTCAGGACCTCCTTCATGC 59 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 1 2 2 80 1 142162684 142162702 GTACCTAATGCTGGACCGA 59 142161673 142162640 ACAGAAATTTGGCTCCTGG 58 NA Rattus norvegicus 81 Lix1 ENSRNOG00000012988 ENSRNOT00000017442 2 1 1 80 1 59199464 59209700 GAGTTTCAGGAACTAATGACCA 58 59209741 59209759 AGAGCACTTTGTTTCACGG 59 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000009521 ENSRNOT00000012614 3 1 1 60 15 86123328 86123348 TCTATGATCACAGCAAGGAGG 59 86123288 86123306 TGGTTCTCGTACTTGTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga8 ENSRNOG00000027277 ENSRNOT00000027009 2 1 1 60 18 30876336 30876355 GGCAGACACTAATGACAACC 59 30876375 30876396 TGGAATATAGGCTGTGTAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg4c ENSRNOG00000008767 ENSRNOT00000011631 1 1 1 80 5 117905837 117905858 TTACATGGATCCTCATTACTGC 58 117905898 117911707 GATGGACAGTGGAATGTCTC 58 NA Rattus norvegicus 81 Rpl37-ps1 ENSRNOG00000048958 ENSRNOT00000043523 1 1 1 60 17 87020246 87020265 CTAAGAGGCGAAACACTACC 58 87020286 87020306 CTTCGGTAGACGATCTTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cx3cl1 ENSRNOG00000016326 ENSRNOT00000022128 1 1 1 91 19 10648680 10648698 AAGATGACCTCGCCAATCC 60 10647109 10648625 CTCGTCTCCAGGATGATGG 59 NA Rattus norvegicus 81 AABR07017745.1 ENSRNOG00000048707 ENSRNOT00000071740 1 1 1 74 15 30570511 30570529 TACTCCTAGGCCTTCACCT 59 30570705 30570723 GACTTCGTTTCACCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr853 ENSRNOG00000018357 ENSRNOT00000024722 2 1 1 60 5 69785374 69785393 TCACCATGAATGTGCTTGTC 59 69785415 69785434 AGCAGAGGAATCATCAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130,ENSRNOT00000080575 1 3 3 80 4 51898328 51898346 TGAGGTCGTATTTGCCCAG 60 51896712 51898288 GTGGAACTTCTTGTAGTGAATGG 60 NA Rattus norvegicus 81 Trem3 ENSRNOG00000013748 ENSRNOT00000018500 2 1 1 80 9 14714820 14714839 CTTCATACTGAACAAGGGCC 59 14714310 14714778 GAAGGCTGTAACACCTTAGG 58 NA Rattus norvegicus 81 Sdr39u1 ENSRNOG00000020544 ENSRNOT00000064643 2 1 1 80 15 34565841 34565860 TTGCTAGCTAAAGCCATCAC 58 34565017 34565799 TGGCTGGTAGTAAGCTACAC 59 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000091362 1 1 3 60 20 3979938 3979956 AATCCAGGGTAATGGGCAG 60 3979977 3979998 CTCCTTAGGCTCTGATACTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912339 ENSRNOG00000050082 ENSRNOT00000072310 1 1 1 60 3 72974808 72974827 TGTGACATTTCACCATTGCT 58 72974844 72974868 GCACTACCTTATTGAACTTAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r9 ENSRNOG00000013671 ENSRNOT00000029537 2 1 1 81 1 55865375 55867285 TTACACAGATTCCTCAGTCTG 57 55865314 55865333 CATACAGCCCTACCTTTCTG 58 NA Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 2 1 1 92 1 89409705 89416227 CTTCGCAACCATCTACAGG 58 89416283 89416301 ACAGTGTTGATCTCCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC102548369 ENSRNOG00000031960 ENSRNOT00000041344 2 1 1 60 15 100303625 100303644 AGTACAAGTTACTGGAGCCT 58 100303584 100303604 ATATCCACACCAGCAAATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 2 2 2 80 10 88481438 88484515 ATCATCAGTGCCTTAGACG 57 88484559 88484577 TTCCCTGAGTATCTCCCTG 58 NA Rattus norvegicus 81 Raet1d ENSRNOG00000023659 ENSRNOT00000028992 3 1 1 80 1 1473578 1474766 GCTAGACGATGTACACTCTG 58 1473517 1473535 TGTTCTTCATACCAGAGCG 57 NA Rattus norvegicus 81 Pnisr ENSRNOG00000008782 ENSRNOT00000061139 3 1 1 80 5 36003664 36004966 AACCTCCACAGATTGATGC 58 36005010 36005028 TTTCACGCTCCATCTTCTC 58 NA Rattus norvegicus 81 Etnppl ENSRNOG00000045743 ENSRNOT00000074209 2 1 1 80 2 235744305 235747890 CTTGAGCATGCTTACCACG 59 235747934 235747952 CTTGACATCTTTGCCCTCC 59 NA Rattus norvegicus 81 Sbds ENSRNOG00000000888 ENSRNOT00000001190 3 1 1 80 12 29922588 29922606 TGCCAAGAAGGAAGACCTC 59 29922647 29925413 TCTCCTTTAGTCAGAATCTGCT 59 NA Rattus norvegicus 81 Olr1654 ENSRNOG00000054976 ENSRNOT00000085156 1 1 1 60 17 44852577 44852595 GGATCATCACACCCATGCT 60 44852535 44852554 CCCTTTACCTCTTCGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp939 ENSRNOG00000037366 ENSRNOT00000039649 2 1 1 134 1 95402788 95403888 ATTATTGAAGCAGACCTGAAGG 59 95403983 95404001 TTTCTTACGTGCGTGACTC 58 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077,ENSRNOT00000038973 3 2 2 80 7 98532652 98532676 GAAGATACAGATTGGAAAGAAGGTC 60 98532711 98534288 TAAGACTCCACCATTTCCTCAG 60 NA Rattus norvegicus 81 LOC100362808 ENSRNOG00000047490 ENSRNOT00000050604 1 1 1 82 1 75194602 75194788 TATTGCAGTTCTGTCTTGGTG 59 75194832 75194850 ATACTGAGGCCTGAAGACG 59 NA Rattus norvegicus 81 Il20 ENSRNOG00000004633 ENSRNOT00000067006 2 1 1 80 13 47646869 47646992 CTGAAAGACACAAAGCTTTCG 58 47646809 47646827 GACTTTGAACACCCTGTCC 58 NA Rattus norvegicus 81 Galnt14 ENSRNOG00000007951 ENSRNOT00000010613 3 1 1 80 6 24803327 24813062 CAGGGTCAAAGAGGATTACAC 59 24803267 24803290 GACTCAATATAGTTGAAGGTGTCC 59 NA Rattus norvegicus 81 Ret ENSRNOG00000014751 ENSRNOT00000047685 3 1 1 80 4 150212802 150212822 GAACGACTCTTCAACCTTCTG 59 150211015 150212760 CATCAGGCGGTACATTTCC 59 NA Rattus norvegicus 81 Dock3 ENSRNOG00000014576 ENSRNOT00000019867 2 1 1 80 8 115681108 115683303 GACAAGCAACATCATAGTCAC 57 115681048 115681066 AAGTCAAAGTCCGTCTCTG 57 NA Rattus norvegicus 81 LOC100911035 ENSRNOG00000045648 ENSRNOT00000042245 1 1 1 60 1 149963921 149963939 CAAGCCTCTCCTCTATCCT 58 149963960 149963981 AGCCAGTGTCATTTGAATACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501189 ENSRNOG00000019128 ENSRNOT00000026010 1 1 1 80 9 103192925 103192946 AAATTCCGGCATTCTACTAGAC 58 103157098 103192888 GGAGCTAGATTACACCTTATGAC 58 NA Rattus norvegicus 81 Manbal ENSRNOG00000031453 ENSRNOT00000047047 3 1 1 91 3 153491170 153502910 GTGTTACCGGAGAACTTGG 58 153502965 153502983 AGAAATCCAGGTCAGAGGC 59 NA InUTR Rattus norvegicus 81 Cyp4x1 ENSRNOG00000043513 ENSRNOT00000011985 3 1 1 80 5 133946026 133946889 CAGAACAGACCCAAAGACC 58 133944102 133944121 GGCCCATCTAAATTCAGGAG 58 NA Rattus norvegicus 81 Recql5 ENSRNOG00000005107 ENSRNOT00000007246 3 1 1 80 10 104477650 104479864 TTGCCTTGATTCAGGACCA 59 104477588 104477609 GTACTGAGAGCTTTGAGTTCAG 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356,ENSRNOT00000090808,ENSRNOT00000008972 3 3 3 82 4 56642914 56642932 AAAGGAGGAGTTTACCGCT 59 56642977 56643614 TATCCTCCATGGTTTCCTGC 60 NA Rattus norvegicus 81 Maoa ENSRNOG00000002848 ENSRNOT00000066674 1 1 1 80 X 6568115 6568895 GAACACTATGAGTGCAAATACG 58 6568056 6568076 TGGAAGCTCTGGTTTAAAGTG 59 NA Rattus norvegicus 81 Edaradd ENSRNOG00000002624 ENSRNOT00000003535 1 1 1 80 17 90813459 90814510 ACTTTATCCTTTGCCATGTCAG 59 90820685 90820703 AGTGACTGCATCACACTCC 60 NA Rattus norvegicus 81 Lgals1 ENSRNOG00000009884 ENSRNOT00000013538 3 1 1 80 7 120154462 120154481 ACCTGAATCTCAAACCTGGG 60 120154523 120155727 CCAGGTTCAACACAAAGCTC 60 NA Rattus norvegicus 81 Rnft1 ENSRNOG00000003805 ENSRNOT00000005064 3 1 1 92 10 73815540 73817286 ACACGACCAAGTTATGGAG 57 73817342 73817360 TGGCTTCTGAAATTCAGCT 57 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 2 2 2 80 4 56857997 56859679 TTTGCTCAGTTGTACTCTACTC 58 56857938 56857956 AGCAGCCATGATAAAGAGG 57 NA Rattus norvegicus 81 Pcdhb20 ENSRNOG00000033123 ENSRNOT00000048166 1 1 1 60 18 30583901 30583922 GTCCCAGAACTACCAGTATGAG 60 30583942 30583961 TTTGAACTCGTTTGTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000084246 3 1 5 60 20 4047189 4047208 ATCCCTCCAATGTTACCCAC 60 4047231 4047249 AGCTCAGTAGTGGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March9 ENSRNOG00000046245 ENSRNOT00000072468 3 1 1 93 7 70343852 70344144 TCTGCATAGGTCTCATCGT 58 70343777 70343796 TAGTTCAGGACCTTCCACTG 59 NA Rattus norvegicus 81 Rab26 ENSRNOG00000042086 ENSRNOT00000004249 2 1 1 81 10 13894845 13894964 TTTACAGCCATAGCAAAGGAG 58 13894784 13894802 TCACATAGTCATGCAGCCT 59 NA Rattus norvegicus 81 Nhlrc1 ENSRNOG00000026286 ENSRNOT00000031656 2 1 1 60 17 18060449 18060467 GGTTACTCATGGCCTTTCC 58 18060488 18060509 AAGAAGAGAATTCTCCTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cemip ENSRNOG00000012442 ENSRNOT00000036343 1 1 1 80 1 146109184 146109203 GACAGATGCTATCCCTACAG 57 146108394 146109141 CAGTGCAAACTTGATGTGG 58 NA Rattus norvegicus 81 Golga7b ENSRNOG00000015051 ENSRNOT00000020390 2 1 1 80 1 261512999 261513017 TGAGAAGGTCTTTGCTCCC 59 261513057 261514222 TAGATGGAGATCTCGATAACCCT 60 NA Rattus norvegicus 81 Chst9 ENSRNOG00000015867 ENSRNOT00000021253 3 1 1 80 18 6865151 6969990 GAGTATCGGTGACTACAGGA 58 6835884 6835905 TCTTTAGATCTTCGGGTATGTG 58 NA Rattus norvegicus 81 Gpr34 ENSRNOG00000039759 ENSRNOT00000060988 1 1 1 187 X 10030525 10031157 CCTCAACTCAGTTCCTGTG 58 10024590 10024608 GCTGTCAACTGTAGTCGTC 58 NA InUTR Rattus norvegicus 81 AABR07020999.1 ENSRNOG00000026400 ENSRNOT00000035157 2 1 1 60 13 52413255 52413275 ACAGTGTCTTGGACATCAGAG 60 52413297 52413315 AAGGGTTTGGGCAAATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptma ENSRNOG00000025731 ENSRNOT00000051368 2 1 1 60 13 89873601 89873621 TGGAGATGAAGATGAGGAAGC 60 89873561 89873580 CTCATCATCCTCAGCTACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dag1 ENSRNOG00000019400 ENSRNOT00000026327 3 1 1 97 8 116985260 116992792 TTATCAAGGTGTCTGCAGCA 60 116985182 116985201 ATCAGTGTCAAGAGGAAGGC 60 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 3 2 2 128 1 80650275 80655213 CTCAGAGTCATAGCCCAGC 60 80650165 80650183 TGAGATCCAGGTGATTCGG 59 NA Rattus norvegicus 81 Olr1630 ENSRNOG00000012515 ENSRNOT00000016683 3 1 1 60 15 26939879 26939901 CCAATTATTCAGTGGTGTCTGAG 60 26939841 26939859 TGAAGTTCCCGAGAACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000077034,ENSRNOT00000076521,ENSRNOT00000087859 3 3 4 93 X 115585310 115586072 GATCCTCAGGAGAGTGCTG 59 115586929 115586947 GTGGCTTTCCAGGATAACG 59 NA Rattus norvegicus 81 Olr1615 ENSRNOG00000049936 ENSRNOT00000046583 3 1 1 60 15 27244007 27244027 CACACTTGACTGTGGTTTCTC 60 27244048 27244067 GTTGGGCTCACATACATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Palb2 ENSRNOG00000025126 ENSRNOT00000047420 2 1 1 80 1 192076021 192078668 GAGTTAAAGAATCCTTCCAGTTCC 60 192075964 192075983 ACATGGCTCCTTAGTACCAG 59 NA Rattus norvegicus 81 Ffar1 ENSRNOG00000024009 ENSRNOT00000028533 1 1 1 60 1 89308808 89308827 TCAGTTTCTCGATTCTGCTC 58 89308767 89308785 CCCACATAGCAGAAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk5rap1 ENSRNOG00000015696 ENSRNOT00000021418 2 1 1 80 3 149853574 149853593 ACATCTGTAAGCAGATCCAC 57 149851769 149853532 CTCTTGAATATCCTCTCCGC 58 NA Rattus norvegicus 81 Havcr2 ENSRNOG00000031443 ENSRNOT00000048485 2 1 1 80 10 31566335 31576218 AAGTGGCTCAGAGACACAG 59 31578782 31578802 TTAATTTCATCGGCCCATGTG 59 NA Rattus norvegicus 81 Olr203 ENSRNOG00000045907 ENSRNOT00000043904 2 1 1 60 1 173180125 173180146 TTTGATGGGTGTGACTTTACTC 59 173180086 173180108 TAGTAAGTAAGAGGTCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr203 ENSRNOG00000045907 ENSRNOT00000043904 3 1 1 60 1 173180125 173180145 TTGATGGGTGTGACTTTACTC 58 173180085 173180108 TTAGTAAGTAAGAGGTCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640,ENSRNOT00000070873 3 2 2 80 3 5548538 5551327 GTGGGAAAGGTCTGAAGGA 59 5551371 5551389 AGCCACATAGCTCTTCCTG 59 NA Rattus norvegicus 81 Duoxa1 ENSRNOG00000018005 ENSRNOT00000024245 3 1 1 81 3 114241587 114242259 CACATTAGCCACAGGACTG 58 114241524 114241542 CTTCAGTCTGTGAGGTTGC 59 NA Rattus norvegicus 81 Fam50b ENSRNOG00000017083 ENSRNOT00000022929 2 1 1 60 17 30865041 30865059 AATGACATGAAGGCCAAGC 59 30864999 30865017 TCTTGGCCAGCTGTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725,ENSRNOT00000077935 2 2 2 80 6 96853259 96853277 TTTGCAGAATGCTCAGAGG 58 96853320 96854063 TGCAGTAACGTTCCAATTCC 59 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000076152 3 1 2 80 2 238605418 238606723 AGCAGTGTAGAAGAAGTGTG 58 238606765 238606784 TCGGAGGTTTAAAGTCTCAG 57 NA Rattus norvegicus 81 Wdsub1 ENSRNOG00000005990 ENSRNOT00000008168 3 1 1 80 3 45935472 45935570 CATACCAGGTACGTCACGA 59 45935410 45935429 GTTCACTGTCTTGTCCATCG 59 NA Rattus norvegicus 81 Nr6a1 ENSRNOG00000013232 ENSRNOT00000018751 3 1 1 80 3 23035702 23037182 TTCCTGAATCAAGATATCAGGG 58 23035643 23035663 CTGACAAATGTACCAATACCG 57 NA Rattus norvegicus 81 LOC100911163 ENSRNOG00000030018 ENSRNOT00000028058 1 1 1 80 15 35393601 35394078 TGCAGAGGAAGATCAATGAC 58 35393540 35393559 CACAGGGATAATCTGCTGTG 59 NA Rattus norvegicus 81 Aup1 ENSRNOG00000007842 ENSRNOT00000010602 1 1 1 85 4 113889742 113889760 ATTTGCCAAGTCTTCCTGG 58 113889808 113889929 CTCTGAATCTCCTTCTTGCA 57 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000046636 ENSRNOT00000074109 1 1 1 66 17 43673317 43673335 TAAAGGCCTTGGGAAAGGT 59 43673365 43673383 GATGCCCTGGATATTGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1m ENSRNOG00000046535 ENSRNOT00000074934 2 1 1 88 8 114889589 114889607 GGATGTCCTGTCCAATGAG 58 114889213 114889537 CCAACTCTGAGAACCTGTG 58 NA Rattus norvegicus 81 Fam71d ENSRNOG00000028351 ENSRNOT00000029888 1 1 1 80 6 101881401 101881421 TTAGATGGAGGAGAGTATGCG 59 101881461 101883082 TTCACCTCTCCTATTGACCTG 59 NA Rattus norvegicus 81 Fam71d ENSRNOG00000028351 ENSRNOT00000029888 3 1 1 80 6 101881456 101883080 TTATTCAGGTCAATAGGAGAGGTG 60 101883118 101883137 TGGAAGAACAGATGCCTACG 60 NA Rattus norvegicus 81 LOC606294 ENSRNOG00000000395 ENSRNOT00000000444 2 1 1 80 20 32199265 32199283 CCAGACATTGTCTGTCAGC 59 32196938 32199223 CAACTTCAGGAGTGTCTTCTG 59 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 1 2 2 87 5 157504124 157517495 CTTGGAAACCTTGCAGGTG 59 157504055 157504073 CTTCCTGCTATGCTTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102553012 ENSRNOG00000042322 ENSRNOT00000067185 1 1 1 60 18 30832070 30832091 GACAATGCTCCTGTATTCACTC 59 30832110 30832130 CAGGCAAATTCTCCTTCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 2 2 2 80 11 80760468 80760487 ACTTTCCGGTCAGATTTCTC 58 80760529 80761659 GCACTCATCCACATCTACAG 58 NA Rattus norvegicus 81 Slc38a7 ENSRNOG00000012007 ENSRNOT00000061498 1 1 1 80 19 9629487 9629506 TAGCCATTGCAGTCTACACC 60 9629546 9629769 CAGCTATAATCTTGTCCTGCTG 59 NA Rattus norvegicus 81 Igfbp4 ENSRNOG00000010635 ENSRNOT00000014153 3 1 1 93 10 86951137 86957759 GACCTCTGACAAGGATGAGAG 60 86957814 86957832 TTTGGCCATATGCTTCTGC 59 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 3 2 2 80 1 217027264 217027283 ACTTCTGCCACAGATTTCTG 58 217027323 217027952 ACTTATTTACAATCCCTGCTGG 59 NA Rattus norvegicus 81 Med13 ENSRNOG00000003679 ENSRNOT00000035280 3 1 1 80 10 73722812 73723490 TCACAGCAATATACGAGTCCT 59 73722752 73722772 CCACTTTCATGATGCCATCAG 60 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 1 2 2 87 12 25005363 25005381 GGGATTGGAGGCATTACAG 58 25005516 25006512 CAGCAGCTCCATACTTAGC 58 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 3 2 2 88 12 25002392 25005302 GAAGTATGGTGCTGGAGGA 59 25005354 25005372 CTCCAATCCCAGGAATTGC 59 NA Rattus norvegicus 81 Gsx2 ENSRNOG00000002266 ENSRNOT00000003080 2 1 1 188 14 35652159 35652178 ATCACCATCACCACCATCAG 60 35651314 35652008 TATCTGAGCCTCCCATGGT 60 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172,ENSRNOT00000087673 3 3 3 80 18 62932186 62932204 TCCGGGAAGATAACAACAC 57 62932246 62938143 TTCGTAACCACCTGTTATTCC 58 NA Rattus norvegicus 81 Mir215 ENSRNOG00000036241 ENSRNOT00000054364 2 1 1 60 13 103250868 103250890 CTATGATTTGACAGACAGTGTGG 60 103250905 103250928 GAATATTGGCCTACAGAATGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd1 ENSRNOG00000016467 ENSRNOT00000061504 3 1 1 80 18 6473786 6473805 CTCTGTAAGGCGTTCTTCCA 60 6473721 6473743 GCCTATGGCTTTGTTCTCG 59 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000085670,ENSRNOT00000083535 3 3 3 80 2 250771643 250774738 AGTGACAAGGTGTTCTACCG 60 250771582 250771602 CATAACCTTGTCACATCGCTG 60 NA Rattus norvegicus 81 Prkag3 ENSRNOG00000017248 ENSRNOT00000023365 3 1 1 80 9 82001797 82004111 GTCAATGAATCTGGTCAAGTCG 60 82001600 82001620 GTGGTTGTAAGTTTGTTGTGC 59 NA Rattus norvegicus 81 Ppp1r3g ENSRNOG00000016222 ENSRNOT00000021704 1 1 1 71 17 29567522 29567540 AAGGAGAGGATGCTGACAC 59 29567469 29567487 ATTCACCTTGTTCACAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qprt ENSRNOG00000016980 ENSRNOT00000023080 1 1 1 81 1 198544941 198545194 CAGTATGGAGAAGGCAGTG 58 198544878 198544896 CTTCAGGCTGCTACATTCC 58 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939,ENSRNOT00000017907 2 2 2 80 4 10677350 10681452 TTTGTATCCATTGCAGTGCAG 60 10681492 10681512 CTGCTTTCAGTAAGTTCCACG 60 NA Rattus norvegicus 81 Morf4l1 ENSRNOG00000058412 ENSRNOT00000080421 3 1 1 80 8 97474167 97475436 TTTCCTCAAGTACCTGGCA 59 97474105 97474123 CGATGGTACTCAGGAGGAG 59 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 3 2 2 80 11 84043298 84043709 AAGCAAGAGTGGTAAGCAG 58 84043236 84043255 TCAGAGTCAAACTTGCTGAG 58 NA Rattus norvegicus 81 Hs6st3 ENSRNOG00000048243 ENSRNOT00000071685 1 1 1 60 15 105253496 105253517 CTACTACATCACAATGTTGCGG 60 105253536 105253556 AACGTGTTTCCATTCACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h4b ENSRNOG00000048215 ENSRNOT00000075065 2 1 1 82 17 43617430 43617449 TTCCTGGAGAACGTAATCCG 60 43617494 43617512 TAGACCACGTCCATAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec9a ENSRNOG00000051690 ENSRNOT00000088108 1 1 1 80 4 163176157 163180711 GCATCAAGTTCTCCCAGGT 60 163180755 163180773 GGTTCAGCAATGCTGTGTC 60 NA Rattus norvegicus 81 Clec9a ENSRNOG00000051690 ENSRNOT00000088108 3 1 1 80 4 163185855 163185874 TGGGAGTGTTTCAAGATGGA 59 163185916 163186976 CTGTTGGCAACAAGTCAGAG 60 NA Rattus norvegicus 81 LOC100361492 ENSRNOG00000001466 ENSRNOT00000001990 1 1 1 80 1 258246893 258246911 AAACCACAAGCACTACCCT 59 258246953 258247903 TCTCTTCCTGGACTTTAGCTG 59 NA Rattus norvegicus 81 AABR07031019.1 ENSRNOG00000060785 ENSRNOT00000073032 1 1 1 80 10 112062321 112063732 GGAGAAACATTGGTTCCCT 57 112063776 112063794 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 LOC683156 ENSRNOG00000031461 ENSRNOT00000047872 3 1 1 94 17 2824680 2826818 TTTCGAAACAAATCCCAGGC 60 2824605 2824624 ACAGGGATCTTCTGAGTGTG 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173,ENSRNOT00000011851 3 2 2 81 4 57412751 57418975 CTTAACAGTGAAGCTGCCG 59 57419019 57419038 CAGACAGGACTATCTGTCCC 59 NA Rattus norvegicus 81 Tmem41b ENSRNOG00000010752 ENSRNOT00000016224 1 1 1 80 1 174610612 174610632 CTACTTAGTTGGAAGACCCGT 59 174609725 174610570 CTATGACGCTCTACCTGCT 59 NA Rattus norvegicus 81 Olr1587 ENSRNOG00000050941 ENSRNOT00000049819 1 1 1 60 13 92136589 92136607 GCTGTATGTCTTCCACTCC 58 92136629 92136649 CAGAGCCATGACACTTAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 1 1 1 60 1 274649633 274650324 AAACAAGGGCAGTTGTCTG 59 274649591 274649610 AAAGCTTGGGTTTACACAGC 59 NA DesignNoJunction Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 2 2 2 80 15 103319960 103321127 ATCAAGAAGACAGTTGAGTGGT 60 103319901 103319921 GACTGGAAAGGGTTCTAATGC 59 NA Rattus norvegicus 81 Olr878 ENSRNOG00000043334 ENSRNOT00000064311 1 1 1 60 7 3499555 3499573 CCATCCTCATTCTCACCCT 59 3499513 3499533 CGGAGAAAGAAATACATGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC115145.1 ENSRNOG00000058087 ENSRNOT00000085651 1 1 1 80 1 63683298 63683442 GTAGTGACAGGATTCTACAGC 58 63683238 63683257 GAGAGTCACATTTCCTCCTG 58 NA Rattus norvegicus 81 Polr2g ENSRNOG00000019439 ENSRNOT00000026313 2 1 1 80 1 224994371 224994389 CTTTGGTCCCAACTTGCTC 59 224993704 224994327 AAGCCATATTTCCCAGTGC 58 NA Rattus norvegicus 81 Ube2t ENSRNOG00000005038 ENSRNOT00000006747 1 1 1 80 13 51795965 51796776 TTTGCGAGCTCAAATACTAGG 59 51796815 51796836 CTTTCAGGAACGATAACTTCCA 59 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810,ENSRNOT00000035323 1 2 2 81 16 47871755 47874637 ACGAGGATCAGGAGATGGA 60 47871692 47871713 GAAACTGGACTTAATTCACGGA 59 NA Rattus norvegicus 81 Olr1646 ENSRNOG00000053618 ENSRNOT00000081045 3 1 1 60 15 32925568 32925587 CTTCCTCCTGACCTACTTCC 59 32925527 32925547 AAGGGTGATGAAGATGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 2 2 2 80 20 46748394 46748412 CTGCGACATTACGAATGGC 60 46748456 46751536 AAGGAGTCACTCACCAAGG 59 NA Rattus norvegicus 81 RGD1306091 ENSRNOG00000019931 ENSRNOT00000026986 1 1 1 80 19 58773877 58773896 TCTCCATGAAGTGTTTGCTG 59 58773939 58773958 TGATCGTTGTACCACAGGA 58 NA Rattus norvegicus 81 AABR07015180.1 ENSRNOG00000026134 ENSRNOT00000031524 2 1 1 80 14 48270917 48270935 CCACGGTTACATTACACCC 58 48270853 48270874 TTTACTTCTCCACGACTGTC 57 NA Rattus norvegicus 81 Reg4 ENSRNOG00000019046 ENSRNOT00000025821 3 1 1 80 2 200398023 200402916 AGTCCTGAGTGATATCTTGAGAC 59 200402954 200402974 TTCCGGAAGTACCCATAACAG 60 NA Rattus norvegicus 81 Mir500 ENSRNOG00000036262 ENSRNOT00000054385 1 1 1 60 X 16121349 16121367 GCTATCTGGGTGCTTAGTG 58 16121391 16121409 ACCTTCTCTGAACCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf6 ENSRNOG00000005031 ENSRNOT00000006699 2 1 1 85 3 5443825 5443844 AAAGGAGGAACCAGTCAAGG 60 5442798 5443783 CTACCTCCACCTTATTAAAGATCAG 59 NA Rattus norvegicus 81 AABR07063459.1 ENSRNOG00000049435 ENSRNOT00000071242 2 1 1 90 6 31011738 31011790 AAATTCACGCATCATCCCA 58 31011842 31011862 GATAAAGTTCATGCCTCTCGA 58 NA Rattus norvegicus 81 Olr713 ENSRNOG00000046126 ENSRNOT00000041870 3 1 1 60 3 78340350 78340368 CTCTTGTTGGTGGTGTCCT 60 78340308 78340328 CAGAGATCACTTGAAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0747.2 ENSRNOG00000022281 ENSRNOT00000029178 2 1 1 60 X 73808256 73808276 AATTCAAGTCCAGCTAGTTCC 58 73808216 73808234 GAGGTCTACATGCTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 3 2 2 137 9 92511327 92511346 CTAGCGGGTATTTCTCCCTC 60 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Tnnc1 ENSRNOG00000018943 ENSRNOT00000025606 3 1 1 81 16 7295054 7295074 GAAGATGACATCGAAGAGCTC 59 7295117 7295221 TGAACTCCAGGAACTCGTC 59 NA Rattus norvegicus 81 Rabif ENSRNOG00000004424 ENSRNOT00000005845 1 1 1 134 13 51317511 51317529 AGAACGAGCTAGTGTCAGC 60 51328896 51328914 GCTTCTTCCTCATGGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Habp4 ENSRNOG00000019027 ENSRNOT00000025801 2 1 1 80 17 1690849 1690868 GCAAACAGAATGGAGGACAG 59 1690911 1691921 TGGCTCTGTGTCACTAGTG 59 NA Rattus norvegicus 81 LOC100360891 ENSRNOG00000048413 ENSRNOT00000042721 1 1 1 91 15 31243133 31243246 TTTCTCCTGAGAGTTGCCC 59 31243301 31243319 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Olr87 ENSRNOG00000021290 ENSRNOT00000039822 1 1 1 60 1 168390848 168390866 CACCATTCCCAAGATGCTG 59 168390889 168390908 GCCTTCAAAGCTTATCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt2 ENSRNOG00000004756 ENSRNOT00000006637 1 1 1 80 13 51575645 51576367 AGATCCAGAAAGTCCAGGT 58 51576410 51576429 CGAAGATCTTTCCAATGGCT 58 NA Rattus norvegicus 81 Map2k4 ENSRNOG00000003834 ENSRNOT00000005293 2 1 1 80 10 52270576 52290634 AAAGGCACAAAGTAAACGC 57 52270514 52270532 TTCAGAGTAAACCGTGCTG 58 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000003088,ENSRNOT00000082183 1 2 2 80 14 36127348 36135024 TCATCTGATTCAGGCCAGTG 60 36135067 36135085 TGAAAGATGTCTGGGCTGG 60 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000026231 1 1 2 80 1 198116799 198117073 GTATGCTGCAGGATGAAGAG 59 198116738 198116757 CTGCCAAGCAGATGATATGG 59 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 1 2 2 177 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428691 12429721 ATCAAAGAACACCTGCGTC 59 NA InUTR Rattus norvegicus 81 Irgc ENSRNOG00000024257 ENSRNOT00000030900 2 1 1 117 1 81293284 81295274 CATCTGAGCCACTGAGGAG 60 81293185 81293203 CATGAGGATGGTGGTCTCC 60 NA InUTR Rattus norvegicus 81 Srd5a1 ENSRNOG00000017601 ENSRNOT00000023659 1 1 1 80 1 36329907 36336437 GTTTCCTGACAGGCTTTGC 60 36336478 36336499 TTCTCAGATTCCTCAGGATGTG 60 NA Rattus norvegicus 81 Pitx1 ENSRNOG00000011423 ENSRNOT00000015307 3 1 1 274 17 8880904 8880922 CACTCACTTCACAAGCCAG 59 8882997 8883016 AGTTGTTGTAGGAGTAGCCG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911779 ENSRNOG00000017230 ENSRNOT00000023215 3 1 1 81 1 263503375 263506440 TTAGTCTGTTTCCAGGGTCTG 60 263503314 263503334 GAGGGATGTCATAGGACTCTG 59 NA Rattus norvegicus 81 Rn60_11_0375.6 ENSRNOG00000051288 ENSRNOT00000077019 3 1 1 60 11 33857873 33857893 CAAGGATTACACGGTTCAAGG 59 33857913 33857933 CCCATCTTCACAGAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nubp2 ENSRNOG00000015090 ENSRNOT00000020504 3 1 1 87 10 14247024 14247044 AGCATCTCCCTTATGTCTGTG 60 14246094 14246978 TTATCAGTGCATGTTTCTTGGG 59 NA Rattus norvegicus 81 Lilrb3 ENSRNOG00000054954 ENSRNOT00000084439 1 1 1 80 1 63739218 63739514 TGAAGAGGCCCAGAAAGAG 59 63739558 63739576 TTCTGCTGGTCTCTATCCC 58 NA Rattus norvegicus 81 Cmtm4 ENSRNOG00000011009 ENSRNOT00000014749 2 1 1 80 19 821563 823461 TGCTGCTGTGATATTTGGC 59 823504 823523 CTGACTCTCCATTTCTGCAC 59 NA Rattus norvegicus 81 Baiap2l2 ENSRNOG00000012215 ENSRNOT00000016362 1 1 1 80 7 120517855 120518617 ATGGCCATCTACAAGAGCA 59 120517793 120517811 CCGGAGGTAGTTGTTACCC 60 NA Rattus norvegicus 81 Cbr1 ENSRNOG00000047848 ENSRNOT00000042283 2 1 1 89 11 33813364 33813867 TCGCCTTCAAAGTTGTTGAC 59 33813919 33813937 TGCAGACATCTTGGGTACC 59 NA Rattus norvegicus 81 Pcdhb21 ENSRNOG00000033479 ENSRNOT00000040016 2 1 1 60 18 30589045 30589064 ACAGACGTGAATGACAATCC 58 30589086 30589105 CTTGGATAGGGCTCATAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1373 ENSRNOG00000039760 ENSRNOT00000060989 3 1 1 60 10 12603245 12603264 GAACCCTTTCATCTACAGCC 58 12603285 12603305 GAGCACTTTCCTTAAAGCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 3 3 4 80 17 4271372 4271865 CATATGAAGCACAGGATGGAC 59 4271907 4271925 GTGGGACTTTCACAAAGCC 59 NA Rattus norvegicus 81 Rn60_11_0375.5 ENSRNOG00000051106 ENSRNOT00000075943 1 1 1 60 11 33840962 33840981 GGGCAGTTGATAGAGAAGAC 58 33841004 33841022 AGCCTTGGATCATACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atxn10 ENSRNOG00000014637 ENSRNOT00000021071 2 1 1 80 7 126271948 126276336 CAATCAGGAAAGGGTCACAC 59 126276375 126276397 GAGATGTCATCCTTTGTCAACTG 60 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441,ENSRNOT00000065280 3 2 2 80 5 128717805 128718782 GTCTTACCTCCAGAACCCG 60 128717743 128717761 GGTAGCTAACACAGGTCCA 59 NA Rattus norvegicus 81 Taar9 ENSRNOG00000026096 ENSRNOT00000038523 3 1 1 60 1 22319999 22320019 AACAGGCTAGGAAGATAGAGG 59 22320041 22320059 TTGTAGCTCTCAGAGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000082321 1 1 2 133 20 3935574 3935592 ATGAGCAGAAGTCAGGAGG 59 3936956 3936974 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000078036 2 1 2 60 20 3938480 3938498 GACACAGAAATGGCTTGGA 58 3938520 3938540 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr276 ENSRNOG00000055310 ENSRNOT00000087918 3 1 1 60 1 172892217 172892236 CATCCTCTTCACCATCATCC 58 172892259 172892277 GGTACTGAGGTTCCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabp5 ENSRNOG00000014787 ENSRNOT00000020090 1 1 1 80 1 75701087 75701107 CCAAATTGCTTGCAGAAACAG 59 75701148 75702743 CTCCATTGGCATCAAACTCC 59 NA Rattus norvegicus 81 Apoa5 ENSRNOG00000018436 ENSRNOT00000024918 3 1 1 85 8 50559266 50559284 TCGCTACTTTGTGACAGAG 57 50559523 50559628 GTTGCAAACACTGAGAGGA 58 NA Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952,ENSRNOT00000079412 2 2 2 60 16 24780867 24780888 CGAGACTATAGCCATGTCTACC 60 24780828 24780846 TGCCTGCTTCAAAGAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsnax ENSRNOG00000049784 ENSRNOT00000071827 2 1 1 80 19 57771970 57771989 ACTTCCCACATAACCAAAGG 58 57772032 57772479 GCTGAAACGATTTGAAGGC 58 NA Rattus norvegicus 81 Mettl23 ENSRNOG00000000249 ENSRNOT00000000266 3 1 1 80 10 105791147 105791811 GTCTTAGAGATTGGAGCTGGA 59 105791848 105791871 GCTGTCAGATAGTGTTACTTTAGC 60 NA Rattus norvegicus 81 Mir2964 ENSRNOG00000035452 ENSRNOT00000053575 1 1 1 60 3 8407433 8407451 GAGCTCAACCACAGATGTC 58 8407474 8407493 CAATTCTTGTACGAGTCTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 1 2 2 80 11 82647411 82647431 CATTAAAGACCAAAGGCTGGA 59 82646670 82647373 CAACTCTATACTGTTTGGGAACC 59 NA Rattus norvegicus 81 Stk40 ENSRNOG00000025679 ENSRNOT00000035597 2 1 1 80 5 144146978 144147347 CATCATTGCATCTTGGCAG 57 144147391 144147409 CTGCTCATTTGGTCATCGA 58 NA Rattus norvegicus 81 Fam210b ENSRNOG00000004466 ENSRNOT00000005901 3 1 1 130 3 170360230 170360248 GCTAAGCAAATCCCAGCAG 59 170360342 170361171 ACATGTCTATGCCACTGGA 58 NA Rattus norvegicus 81 Mir20b ENSRNOG00000036558 ENSRNOT00000054662 2 1 1 60 X 140117562 140117580 AAGTGCTCATAGTGCAGGT 59 140117520 140117538 GTACCAGAAGTGCTCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 2 2 2 80 4 86139251 86141460 GACTATATGAGATCTCTGCACC 58 86141499 86141519 GGAGGAATAGCAAGAGTTGAG 58 NA Rattus norvegicus 81 Mir223 ENSRNOG00000035505 ENSRNOT00000053628 3 1 1 60 X 65367830 65367848 TACGCTCCGTGTATTTGAC 58 65367871 65367890 GACAAACTGACACTCTACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 1 2 2 80 14 37998532 37998550 AGTGCTGTAGACAAACGGA 59 37998590 38000509 GCAGGGTCTTTCTTATACTACTC 58 NA Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 3 2 2 80 6 101987222 101995073 TGTACAAGAGGTACAAACTGTC 58 101995113 101995132 TGTGGAGCATTTAACAAAGC 57 NA Rattus norvegicus 81 Klhl24 ENSRNOG00000033372 ENSRNOT00000052120 1 1 1 80 11 84622936 84623893 ATGACATTCTTGTTTCAGGTGG 59 84622877 84622900 CTCTGATCCAGATATTCAACTGTG 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 3 2 2 86 5 165924827 165924846 ATTTCCTCTGTCTCCCTTCC 59 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Kcnmb4 ENSRNOG00000054458 ENSRNOT00000085579 2 1 1 82 7 59514455 59514473 ACAACTCCGAGTCCAACTC 59 59490339 59514410 CGGGATATAGGAGCACTTGG 60 NA Rattus norvegicus 81 AABR07065776.2 ENSRNOG00000047996 ENSRNOT00000045885 1 1 1 80 6 140834022 140834122 TAGCTACACGTGTCTACTCAG 59 140833962 140833980 ACAACTTGACTGAGGACCA 59 NA Rattus norvegicus 81 Lrriq3 ENSRNOG00000009555 ENSRNOT00000012841 2 1 1 80 2 261462329 261487958 ACATCACATTCAGAAAGGTCAG 59 261487995 261488017 GCAGATATCCTAAACTTGGTGTC 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 1 2 2 80 8 114604201 114606647 TCTGCTCTGATAAAGGATGTG 58 114604141 114604159 TTGTAAGCCCTATGCTTCC 57 NA Rattus norvegicus 81 Tssk3 ENSRNOG00000008693 ENSRNOT00000011887 2 1 1 96 5 147690997 147691663 GGCCAGAAGAGTTTATCCAG 58 147690920 147690938 TCCAGCATCTCATACACCC 59 NA Rattus norvegicus 81 Apol2 ENSRNOG00000048970 ENSRNOT00000075248 3 1 1 94 7 118980475 118983539 TGAGTTGTCCAGAGCTGAC 59 118980399 118980417 CATGTTGGAGCCTGTTCTG 59 NA Rattus norvegicus 81 Olr95 ENSRNOG00000045808 ENSRNOT00000055226 2 1 1 60 1 168479060 168479079 CCATTGATCGCTATGTAGCC 59 168479019 168479038 CTGTTGGTGAGAATAGTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpnpep3 ENSRNOG00000019196 ENSRNOT00000068666 2 1 1 80 7 122681981 122683825 TGAACCAGGCATTTATATCCCA 60 122683865 122683884 TCATCCTCAATCCGAACTCC 59 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221,ENSRNOT00000066037 3 2 2 82 7 11691412 11691430 AATCACGAACACTTCTGCG 59 11690286 11691366 TCCTGGAATTCGTTGAAGC 58 NA Rattus norvegicus 81 Vom2r5 ENSRNOG00000032365 ENSRNOT00000041332 3 1 1 82 1 805735 806898 TGATACAGCAGATATGGAGCAG 60 805674 805692 CTCTTTGGAGACACTGGCT 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193,ENSRNOT00000033863 2 2 2 81 3 172801150 172802361 CTCTAAAGGATATTTCTCCAGCTG 59 172802400 172802419 GATAGTCCAAACCCATCAGC 59 NA Rattus norvegicus 81 LOC100361952 ENSRNOG00000038376 ENSRNOT00000058437 1 1 1 90 4 93959193 93959591 GATTCAGGGAACCAGTGGT 59 93959645 93959663 CTTGCAAGAGATGGAGGCT 60 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000067251,ENSRNOT00000068116,ENSRNOT00000002636,ENSRNOT00000036179 2 5 5 80 11 78263089 78263109 TGCCCAGTATGTAGAAGATCC 59 78261702 78263047 AATTCAGTGCCAACCTGTG 59 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 2 2 2 80 1 228745422 228745440 GAAAGCTGTCGAAGTGTGG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Mir742 ENSRNOG00000040422 ENSRNOT00000062175 2 1 1 60 X 151260357 151260376 TCACATGGTTGCTAATCACG 59 151260316 151260336 GCTTTACTTTACCCAACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000075840 2 1 2 86 X 140880644 140880662 CGGACAAGCCCTATATCTG 57 140880709 140881559 GAGATTCATGAACCTTCATGTG 58 NA Rattus norvegicus 81 Mks1 ENSRNOG00000008635 ENSRNOT00000011500 1 1 1 80 10 75153902 75153921 TGAAGGTGGATAGCAATGGA 59 75153962 75154564 CCTCAGTCTCGATTCTGTAGG 60 NA Rattus norvegicus 81 Olr1643 ENSRNOG00000013338 ENSRNOT00000017795 1 1 1 60 15 28894757 28894776 TCATTGTTGTCACCATCGTC 59 28894797 28894817 CTCAGAAAGAAGTACATGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf126 ENSRNOG00000009028 ENSRNOT00000012317 3 1 1 89 7 12825321 12825487 CCATTTGAGAATGTGGACCAG 59 12825537 12825556 AATCTCAAAGCTGTCGTCGA 60 NA Rattus norvegicus 81 Hs2st1 ENSRNOG00000012549 ENSRNOT00000016872 3 1 1 80 2 250473693 250481883 AACAAGGAGACAAGAAGACCT 59 250473633 250473651 TCTGAAGCCAGAGCTTCTC 59 NA Rattus norvegicus 81 Zc3hc1 ENSRNOG00000010154 ENSRNOT00000013604 1 1 1 80 4 57692111 57692131 GCAAATTAGGCTCAGACATCC 60 57690857 57692070 GCTCCAATGAACTACATGCC 59 NA Rattus norvegicus 81 Mir363 ENSRNOG00000036273 ENSRNOT00000054396 1 1 1 63 X 140117159 140117177 GTTATCGGGTGGATCACGA 59 140117114 140117133 TGGATACCGTGCAATTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim72 ENSRNOG00000022099 ENSRNOT00000029994 2 1 1 80 1 199450938 199453919 CATGCACGTCTCAAGACAC 59 199453962 199453981 TGCTACACTCTTCTCCTTGC 60 NA Rattus norvegicus 81 Ccdc136 ENSRNOG00000007100 ENSRNOT00000060309 2 1 1 80 4 56694875 56694894 CCTTCACAAGAGTTATGCCA 58 56694936 56695315 ACTGTTTCCTCAAAGTGCTC 59 NA Rattus norvegicus 81 Rn60_X_0752.4 ENSRNOG00000018301 ENSRNOT00000042584 3 1 1 60 X 74371994 74372018 CCTTTGAAGACATACATCAGTACAG 60 74371958 74371979 ACATCATCTGAATCTTTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 1 2 2 80 17 10360833 10360853 ACAACAATGTCAAAGCCTACC 59 10358783 10360792 CACAGCAAGACCAGTATTCC 59 NA Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 2 2 2 80 17 10357829 10357847 CAGTTTGAGAAGTGGCTCC 59 10357690 10357785 GCCACATATCTGGAGGAGG 59 NA Rattus norvegicus 81 Zfp385c ENSRNOG00000025370 ENSRNOT00000032737 3 1 1 81 10 88543725 88544607 AACCCTCAGAGCAAAGATCC 60 88543663 88543681 CTCTGGTTGATGGGTCTGG 60 NA Rattus norvegicus 81 Rn60_X_0768.3 ENSRNOG00000051760 ENSRNOT00000077359 3 1 1 60 X 76748635 76748653 ACATTAGTACCCAGACCCA 57 76748675 76748695 TGCAATGGACTTAGTAGTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm4d ENSRNOG00000024726 ENSRNOT00000033932 1 1 1 72 8 12993631 12993649 AAGGCGCAAATAAGTACGG 59 12970446 12970465 AATCTCTTCAGGGATGTGAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chrna9 ENSRNOG00000002484 ENSRNOT00000003382 2 1 1 80 14 43885837 43888359 CATTGTCCTATACAACAAGGCTG 60 43885779 43885797 ATGAGCCCATCATATCGCA 59 NA Rattus norvegicus 81 Rbsn ENSRNOG00000011391 ENSRNOT00000015602 1 1 1 80 4 124062591 124064074 GCTCTACGAGAAACTTCGAC 59 124062530 124062549 TTTAATGATGCTGCCATCCT 58 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000077409 2 1 2 92 1 216661987 216662551 AATGCGAACGACTTCTTCG 59 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA DesignRelaxed Rattus norvegicus 81 Agbl4 ENSRNOG00000033097 ENSRNOT00000044795 1 1 1 80 5 130286518 130293039 CATACATGGCAATGATACAGGA 58 130293079 130293098 GAGTAACCAGTTGGAAGCAC 59 NA Rattus norvegicus 81 Serinc2 ENSRNOG00000012989 ENSRNOT00000017577 3 1 1 80 5 148472037 148474754 TTCTTCATTAGCCTGAGATCCT 59 148471978 148471996 CACCATTTCTGCTGGACAC 59 NA Rattus norvegicus 81 Mphosph10 ENSRNOG00000016266 ENSRNOT00000038511 2 1 1 84 1 125224526 125224546 AAGATACGAGTTCCTTAGCTG 57 125222816 125224483 TTCTCATTCATCTTCTCCTGTC 58 NA Rattus norvegicus 81 Rnf217 ENSRNOG00000013323 ENSRNOT00000017831 3 1 1 80 1 28375790 28375808 AAGTTATTGCGTCACTGGG 58 28375849 28386787 GATATGGATCTTGCACTTTGGA 59 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000000532 2 1 2 88 20 3975058 3975076 ATCTCCTACAAGTACCGCG 59 3974621 3975006 ATGGTTCCATACACCTGGC 60 NA Rattus norvegicus 81 LOC691895 ENSRNOG00000045864 ENSRNOT00000046759 2 1 1 60 X 34162658 34162677 TTCAAGCGATTCTTCCTGAG 58 34162617 34162636 ACACAAACATCTCCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Doc2a ENSRNOG00000019920 ENSRNOT00000027022 3 1 1 81 1 198285421 198285439 AAGCCCATGGATTTCAACG 59 198285483 198285612 TTAGCTTATTGGCCTTGCAG 59 NA Rattus norvegicus 81 LOC688424 ENSRNOG00000000252 ENSRNOT00000000269 1 1 1 60 19 3608936 3608956 CTAAAGGAAACAAGGCCAAGG 60 3608978 3608996 TTAGCAGACAACCTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amn ENSRNOG00000009050 ENSRNOT00000012469 3 1 1 159 6 135725331 135729620 CCATCTCGGATATGCTCCTG 60 135729857 135729875 CATAGGTGAGGGTCAAGCC 60 NA Rattus norvegicus 81 Fam134c ENSRNOG00000020056 ENSRNOT00000027217 1 1 1 80 10 89012995 89013844 CGTTGGACAATGAGAGTTGG 59 89012934 89012953 AGACTTCAGCTACATGGTGG 60 NA Rattus norvegicus 81 Asl ENSRNOG00000000903 ENSRNOT00000001211 3 1 1 80 12 30177179 30177704 TCTACACTGCAGATTCATCGT 59 30177746 30177764 CAGGTAGTAGGCAAGGTCG 60 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 2 2 2 81 4 115265432 115271512 TACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 LOC100910275 ENSRNOG00000049965 ENSRNOT00000043210 2 1 1 80 6 138367159 138367511 GAAGTGGCATTCAAAGGCTC 60 138367098 138367118 GTTGTCATTCTCAGACATGGC 60 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 3 2 2 80 2 114364484 114366837 ACTGGAGCTGAATATGGTATGG 60 114366876 114366896 CGATGTCTGGTACACTCTAGG 60 NA Rattus norvegicus 81 Kcp ENSRNOG00000021855 ENSRNOT00000050795 2 1 1 80 4 56776919 56776937 AATATCGGAGCCAGGAGAC 59 56776787 56776875 AGGATACTTCACCAGCCTG 59 NA Rattus norvegicus 81 Ubqln1 ENSRNOG00000019282 ENSRNOT00000061233 2 1 1 80 17 6863038 6863057 GCAGCTGATACAGAGAAACC 59 6863099 6864458 CTGGCAAGTTCCAATGTCTG 60 NA Rattus norvegicus 81 Usp39 ENSRNOG00000010930 ENSRNOT00000015562 3 1 1 80 4 100182449 100182469 ATGAACTACAAGACCTCCAGG 59 100181907 100182410 TCTTCCAAATCTGAATGTACGC 59 NA Rattus norvegicus 81 LOC100912849 ENSRNOG00000015386 ENSRNOT00000020640 1 1 1 80 9 15585891 15585909 CTTCAAGAGCCCAGAAGAG 58 15585950 15603777 TTAAGGATTTCTGTGACTCCTG 58 NA Rattus norvegicus 81 AABR07061057.1 ENSRNOG00000049049 ENSRNOT00000075709 1 1 1 60 4 103368983 103369006 GACAGATTTCACACTCAAGATCAG 60 103368946 103368969 GCAGTAATAAACTCCCAAATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2h3 ENSRNOG00000001035 ENSRNOT00000001368 1 1 1 80 12 37440302 37440323 TCTGGTTATCATAGTTGACACC 58 37438993 37440262 CACTTGGACAGAGTGAACTG 59 NA Rattus norvegicus 81 Proc ENSRNOG00000014376 ENSRNOT00000019596 2 1 1 107 18 24920750 24920768 GAAGAAGCTAGCCTGTGGA 59 24919082 24920680 TCATACTCACCAAGCCTCAC 60 NA Rattus norvegicus 81 Dnajc9 ENSRNOG00000006619 ENSRNOT00000009009 3 1 1 83 15 4359534 4359552 CCAAAGAAGCAGAGCTGAG 59 4359599 4359943 TCTGTCTGCTCTGGATGAG 59 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 1 1 1 60 3 122930727 122930745 CTCCTCACCTCCATGACTC 59 122930769 122930788 GGGTTGCCTTCTATTGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Colec11 ENSRNOG00000008373 ENSRNOT00000011290 2 1 1 81 6 47858947 47859431 GAGAACCTGGTATTCCATGTG 59 47858886 47858905 GTTGTCAGTTGAGTGACCTG 59 NA Rattus norvegicus 81 Mettl25 ENSRNOG00000027451 ENSRNOT00000038144 1 1 1 80 7 47888994 47889014 TTTCCAATGTGCCACTATCTG 59 47886120 47888952 TTCCAATGCCAAACATGCT 59 NA Rattus norvegicus 81 Hpdl ENSRNOG00000018143 ENSRNOT00000024393 2 1 1 60 5 135676373 135676393 TAGATGCTTCTGAAGGAATGG 58 135676333 135676352 TAAGCTTCAGGAGGAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magt1 ENSRNOG00000051408 ENSRNOT00000083643 2 1 1 80 X 77038102 77038404 CTGACGTCAACATTAGAGTAATCAG 60 77038046 77038066 CACCAATAACAGCAAGAAGCA 60 NA Rattus norvegicus 81 Magt1 ENSRNOG00000051408 ENSRNOT00000083643 3 1 1 80 X 77030087 77032460 GTTCTTCTCTTCAATGGTGGG 59 77030027 77030048 CTTCCCAATATCCATGTCAGAG 58 NA Rattus norvegicus 81 Mir18a ENSRNOG00000035645 ENSRNOT00000053768 3 1 1 60 15 100180043 100180063 AGTGCAGATAGTGAAGTAGAC 57 100180084 100180103 CTTCTTATGCCAGAAGGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase1l1 ENSRNOG00000025615 ENSRNOT00000033809 2 1 1 60 15 28043985 28044003 ACCTTCCTGCATGAATCCT 59 28043943 28043961 AGGTCATTTGTCTCTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893,ENSRNOT00000074197 1 2 2 80 6 146830873 146830892 GATTCAAACTGCAGCAATGG 58 146826760 146830831 GCTTCTGTTGCTATCTTCCC 59 NA Rattus norvegicus 81 Mir344a-2 ENSRNOG00000046685 ENSRNOT00000053682 2 1 1 60 1 122309608 122309626 TGGCTAGATTCCAGGTACC 58 122309566 122309584 TTACAGCTTACAGTCAGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 1 2 2 80 14 1776337 1776358 ATCAGAAACAAACAGCAGACTG 60 1774303 1776298 CCATATCTGCTGTCTCATTGG 59 NA Rattus norvegicus 81 LOC100911248 ENSRNOG00000001868 ENSRNOT00000002552 2 1 1 90 11 87790983 87791002 AGAATGGACCTGTCTTTGCA 60 87782096 87790930 ACAATGTCACCAACCTCCA 59 NA Rattus norvegicus 81 Fam111a ENSRNOG00000012067 ENSRNOT00000016152 3 1 1 86 1 229013588 229013607 CTAAGAAGCGCAAATCACAG 58 229013655 229016608 CTTCTTTGGGAACCTGAGAG 58 NA Rattus norvegicus 81 Crlf2 ENSRNOG00000049828 ENSRNOT00000075656 1 1 1 96 14 1460200 1460218 TTTGCCATGACCTGGAGAG 60 1459608 1460141 TTTCCATACCGGAACTCCAG 60 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 1 2 2 80 4 57808168 57809082 GCTACAAATAGGAGAGGCGA 59 57808107 57808126 GCATTCAGAGTTGGGATGAG 59 NA Rattus norvegicus 81 Tifab ENSRNOG00000011947 ENSRNOT00000015878 2 1 1 81 17 9237883 9237902 CTCTGTTCCTGTAAAGCAGG 58 9237943 9238210 CCATAGATCCAGCTTATAGGGT 59 NA InUTR Rattus norvegicus 81 Tifab ENSRNOG00000011947 ENSRNOT00000015878 3 1 1 82 17 9237884 9237903 TCTGTTCCTGTAAAGCAGGG 60 9237944 9238212 CTCCATAGATCCAGCTTATAGGG 60 NA InUTR Rattus norvegicus 81 Crip1 ENSRNOG00000027990 ENSRNOT00000006835 1 1 1 80 6 137965332 137966455 GTATTTCGCTGAGCGAGTG 59 137966497 137966517 AGTGTCTTTCCACATTTCTCG 59 NA Rattus norvegicus 81 Tcf7l2 ENSRNOG00000049232 ENSRNOT00000019681 1 1 1 80 1 276710388 276710406 GTACCCAATCACGACAGGA 59 276710448 276715031 GGAGGGAACCTAGACATAGAC 59 NA Rattus norvegicus 81 Tcf7l2 ENSRNOG00000049232 ENSRNOT00000019681 2 1 1 80 1 276720748 276723279 GGAGACCAATGATGCAAATACTC 60 276723317 276723337 CAGGGTTTGCACCATAAAGTC 60 NA Rattus norvegicus 81 Bst1 ENSRNOG00000003064 ENSRNOT00000004094 2 1 1 82 14 71812069 71812087 GTGTGACGTTCTGTATGGC 59 71811392 71812025 AGGACTGGTAATCAAGTCCAG 59 NA Rattus norvegicus 81 Pex6 ENSRNOG00000016655 ENSRNOT00000022582 3 1 1 80 9 16569879 16569897 ATGTGTTTGTGATCGGAGC 59 16569599 16569835 CCAGCTTGTCAAATCTGCC 60 NA Rattus norvegicus 81 Pdcd2l ENSRNOG00000021119 ENSRNOT00000028674 2 1 1 81 1 90053416 90057135 GAACGGACAGAATCAGAGTG 58 90053354 90053372 CTCCTCGGTATCACTTCCC 59 NA Rattus norvegicus 81 Mir29b1 ENSRNOG00000035463 ENSRNOT00000053586 2 1 1 60 4 58344363 58344382 AGCTGGTTTCATATGGTGGT 59 58344322 58344343 CTGATTTCAAATGGTGCTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc3ip ENSRNOG00000020022 ENSRNOT00000027159 1 1 1 80 10 89003454 89003472 AGTATCATGGCCCTCACTG 59 89002946 89003412 TGTTAATTCCTTCAGCTCAGC 59 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219,ENSRNOT00000079599 2 2 2 80 7 114496271 114499084 TCAAGAAGCCTTAACAATGCG 60 114496211 114496233 CAAACTGGGTTCTCTGTAATGAC 60 NA Rattus norvegicus 81 Olr1435 ENSRNOG00000029289 ENSRNOT00000050288 3 1 1 60 10 44347997 44348015 CCACACTCCTTGCATTCTC 59 44347955 44347975 TGATGATCGAGTAGAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v1e1 ENSRNOG00000011905 ENSRNOT00000016495 2 1 1 90 4 153354328 153357164 GAGGACATAGCTGGTGGAG 59 153354256 153354274 GGGCTATTAGGTCCAGTCG 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529,ENSRNOT00000064255 3 2 2 80 16 8793565 8793586 AGCTGTTTACTCTGACTAGTCC 59 8793624 8793724 GAATATTAGATCCGGTTCCTGC 59 NA Rattus norvegicus 81 Kntc1 ENSRNOG00000033658 ENSRNOT00000063990 3 1 1 80 12 38269668 38271435 AAGATCTCCTCTGAGAAGACCT 60 38269609 38269628 GTCTGCCACGATTATGAACC 59 NA Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000018523 1 1 2 80 9 15382745 15382765 CAGTATTGTGACTTCCTGGTG 59 15380798 15382703 ATACTCCACCTCCACAGAG 58 NA Rattus norvegicus 81 Myh3 ENSRNOG00000046276 ENSRNOT00000004147 1 1 1 80 10 53644269 53644287 TGAGATTGCAGGATCTGGT 58 53644331 53644487 CTTGTTCATCAGCCTCCTC 58 NA Rattus norvegicus 81 Rho ENSRNOG00000011144 ENSRNOT00000064603 2 1 1 81 4 147835860 147836829 ATGATGAACAAGCAGTTCCG 59 147836873 147836891 CAGAGGCCTCATCATCTCC 59 NA Rattus norvegicus 81 Gtse1 ENSRNOG00000016148 ENSRNOT00000022012 1 1 1 80 7 126751776 126751794 GCCTCATGAAGACATGCAC 59 126751837 126752180 ATGTCTAGCAGAAGACCCTC 59 NA Rattus norvegicus 81 Mir30c2 ENSRNOG00000035562 ENSRNOT00000053685 3 1 1 60 9 29562388 29562410 CTGTAAACATCCTACACTCTCAG 59 29562429 29562448 AGTAAACAGCCTTCTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrvi1 ENSRNOG00000017767 ENSRNOT00000024060 1 1 1 80 1 175689916 175691075 AGCCTACAACAAAGGATACCA 59 175689856 175689875 TTCTGTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000042425 3 1 2 80 1 86618088 86618107 TTCACAGGAACATCATGGAC 58 86613189 86618046 TCCAATAGAAAGCTGTGGGA 59 NA Rattus norvegicus 81 Piwil1 ENSRNOG00000000934 ENSRNOT00000001238 3 1 1 80 12 31618094 31618479 AAAGGCCATCATGATCGAG 58 31618032 31618050 TGAGTGTCTGATGTCACCT 58 NA Rattus norvegicus 81 Skint10 ENSRNOG00000022988 ENSRNOT00000033163 1 1 1 80 5 133056173 133056191 TTATCTGGGAGTGTCTGCT 58 133053299 133056130 AAATAGAAGCTTGGCTCCTG 58 NA Rattus norvegicus 81 Clip3 ENSRNOG00000020821 ENSRNOT00000028247 3 1 1 80 1 88755126 88755230 ATTGGCAATGAGATTCTGCG 59 88755273 88755291 CGCATAATGGAGCAGTGTC 59 NA Rattus norvegicus 81 Zfp180 ENSRNOG00000029336 ENSRNOT00000026077 2 1 1 104 1 80923852 80929169 GTGTGGAGAACTTTGTTCTACC 59 80933249 80933270 CAATCTTGAAGTCTGTGCTCTC 59 NA Rattus norvegicus 81 Rn60_17_0381.1 ENSRNOG00000052667 ENSRNOT00000086839 2 1 1 60 17 36713334 36713354 GACCTTCATTAACCAGATCCA 58 36713294 36713313 ATCAGTCACCACTAGAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb7 ENSRNOG00000019187 ENSRNOT00000025941 3 1 1 60 7 122643147 122643169 CTCAATATTCTCTTGTGGACGAC 59 122643109 122643127 TCCTTCTTGTTGGTGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp4f37 ENSRNOG00000050888 ENSRNOT00000065282 3 1 1 81 7 13884501 13884709 CATGTTTGGAGGCCATGAC 59 13884754 13884772 CTCCTGGTATTCTGGGTGC 60 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000086185,ENSRNOT00000077999 3 2 3 80 8 78051290 78053307 GACAAGAACAGGTACCAGC 58 78051228 78051246 ATGAACCATGTCATCCAGG 57 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000085843,ENSRNOT00000086185 3 2 3 80 8 77988178 77990031 GACCAATGTGTTACCCACAC 59 77988117 77988135 TGCTCTTCTGAGGAAGCAG 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158,ENSRNOT00000081621 2 2 2 80 9 16049764 16051234 AAGAAGATACAGCACTTCCTC 58 16051275 16051294 CACACTGCAAGATGTTAACC 57 NA Rattus norvegicus 81 Sdc2 ENSRNOG00000004936 ENSRNOT00000007255 3 1 1 80 7 71669601 71669619 CAGCTCCATTGAGGAAGCT 60 71669663 71675859 TCATAAGCTCCTGAGCCAG 59 NA Rattus norvegicus 81 Nol9 ENSRNOG00000010109 ENSRNOT00000013535 3 1 1 80 5 169228220 169229206 GTTTGGGCTTTGGTATCTGC 60 169229249 169229267 ACTCCTCTGGTGGTAGAGG 60 NA Rattus norvegicus 81 Agbl3 ENSRNOG00000010397 ENSRNOT00000032077 3 1 1 80 4 62357116 62357135 TGGCATCCTTGAAATGTCCT 60 62357176 62364840 GGTGATTTGACTCTGTTGGTG 60 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000035129 3 2 3 80 13 56096875 56098751 TGTGGAAAGGGTGTCTCAG 59 56098792 56098813 CCAAATCGTTGCTTACTTTCCA 60 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 3 2 2 80 18 26584330 26604924 GAAGAGAAACAGAATACGACAGG 59 26584272 26584292 TCCTTCTGTCTCCTTAACACG 60 NA Rattus norvegicus 81 Pfdn6 ENSRNOG00000000473 ENSRNOT00000000553 2 1 1 80 20 5456693 5456711 CTTGTCAAACAGGAGCTGG 59 5456755 5457253 GTAGCGCTTAATTTCCGCT 59 NA Rattus norvegicus 81 Scrg1 ENSRNOG00000013228 ENSRNOT00000017888 2 1 1 60 16 36130623 36130641 TTTCAGCGAATTGCTCTGC 60 36127716 36127736 CACAAAGGAGATCTTTGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000074951 3 2 3 92 4 61825561 61825583 TTCTGATCCGGTTCCATATAGAG 59 61825632 61826191 AGTCAAAGACCTGAATGTTCTC 58 NA Rattus norvegicus 81 Morn3 ENSRNOG00000045574 ENSRNOT00000074936 3 1 1 82 12 38975018 38975333 ATTCCTAAGGTGGAGATTCTAGAC 59 38975374 38975392 TCCTCTTCTTCCTCAGGCT 60 NA Rattus norvegicus 81 Vamp3 ENSRNOG00000030055 ENSRNOT00000051554 2 1 1 80 5 168129529 168134544 CAAGTAGATGAGGTGGTGGA 59 168129468 168129488 GTCTAGCTCTGAGAGCTTCTG 60 NA Rattus norvegicus 81 Efnb3 ENSRNOG00000010320 ENSRNOT00000013955 1 1 1 114 10 56164786 56166939 GAATAAGAGGTTCCAGGCAG 58 56164691 56164710 ATAACTAGGAGAGGAGTGGG 57 NA Rattus norvegicus 81 Dgcr14 ENSRNOG00000000283 ENSRNOT00000000308 3 1 1 84 11 87232201 87232776 CTTGGCCAGTCTTACTCCC 60 87232824 87232842 ATACTTGCTGGCTGTCCTG 60 NA Rattus norvegicus 81 Foxo4 ENSRNOG00000033316 ENSRNOT00000048521 2 1 1 83 X 71156273 71156292 TATACGAATGGATGGTCCGC 60 71156337 71159324 GGATGGAGTTCTTCCATCCT 59 NA Rattus norvegicus 81 Wrap53 ENSRNOG00000010520 ENSRNOT00000014261 3 1 1 80 10 56171175 56184262 TATGCCGAAATGGTTCCTG 58 56171113 56171133 GGAGGACATCAGAGAATACCA 59 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894 1 1 2 149 9 16529619 16536286 GTCAGGCTCTACCATCAGG 59 16536399 16536417 AGAACCAGACAAGGCTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894 2 1 2 151 9 16529619 16536286 GTCAGGCTCTACCATCAGG 59 16536401 16536419 TGAGAACCAGACAAGGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 2 1 1 81 17 36906743 36915423 CTACCGGACAGACAGTGTG 60 36906680 36906699 ACATGTTACATGCGAACACC 59 NA DesignNoJunction Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 3 2 2 80 7 37184564 37184582 GAGTTGCAAAGAAAGCTGG 58 37184624 37185783 GTGTTTGATCTGTAGGGACTG 59 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 2 2 2 83 2 95021079 95025899 ACGGGAACTTACTAAGGTGG 59 95025945 95025963 TTGATCTCCGCAAGATGCT 60 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281,ENSRNOT00000015935 1 2 2 80 6 136344995 136345013 GGAGAAGAAGCACCTGGAG 60 136345055 136346100 TCAGAGTCTTTGTCTTCCGAG 60 NA Rattus norvegicus 81 L3mbtl2 ENSRNOG00000024743 ENSRNOT00000034998 3 1 1 81 7 122912127 122912468 CTTCAAGAAGGTCCGAGCT 59 122912513 122912531 ATTCAGAGGGTCAATGGCC 60 NA Rattus norvegicus 81 Hpd ENSRNOG00000001338 ENSRNOT00000001809 3 1 1 80 12 38829985 38830004 GGTCAGTCATGTCATCAAGC 59 38830533 38830698 TCACCCATCTCTTTGTTCCA 59 NA Rattus norvegicus 81 LOC100912436 ENSRNOG00000011399 ENSRNOT00000003628 2 1 1 60 1 8465516 8465534 GACAGACTACGAAGGAGCA 59 8465474 8465494 TTCCTCTTTCACCAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Auh ENSRNOG00000011684 ENSRNOT00000015786 2 1 1 80 17 12400886 12400905 GCAATTAACCAAGGCATGGA 59 12402276 12404788 CGTTGAGATGGTCTGAGCA 60 NA Rattus norvegicus 81 Sep15 ENSRNOG00000055257 ENSRNOT00000083750 2 1 1 81 2 250625263 250633028 AGATCAAGTATGTTCGAGGCT 59 250633071 250633089 AGGATGCTGAGCTCTTCAG 59 NA Rattus norvegicus 81 Sep15 ENSRNOG00000055257 ENSRNOT00000083750 3 1 1 82 2 250625262 250633027 CAGATCAAGTATGTTCGAGGC 59 250633071 250633089 AGGATGCTGAGCTCTTCAG 59 NA Rattus norvegicus 81 Olr1564 ENSRNOG00000045930 ENSRNOT00000060869 1 1 1 60 11 43733991 43734011 ATATTCTACACCTGCCTTCTC 57 43734028 43734051 GTATGTCTTTACTACCATCTTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 2 2 2 80 14 3251055 3251436 GGATTCATCAGAGATCCCTG 57 3250994 3251013 TGCACATAAGATCAACAGCA 58 NA Rattus norvegicus 81 RGD1561871 ENSRNOG00000030441 ENSRNOT00000046453 1 1 1 84 7 63352442 63352460 GACAAGAAAGCTGAGGCTG 59 63352508 63352665 GAGGTTCACTGAGGTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 3 2 2 81 2 115774712 115774734 TCTATCTCATGCTAAAGCTCTCC 60 115774772 115788189 CCAAAGTAAATGAGCATACCCA 59 NA Rattus norvegicus 81 Fam217a ENSRNOG00000016672 ENSRNOT00000022369 2 1 1 92 17 30675719 30675737 ATTACACTGAAAGCCAGGC 58 30675791 30675813 AGAGTTGTTTCTCTTGTCTCG 58 NA Rattus norvegicus 81 Gngt1 ENSRNOG00000010546 ENSRNOT00000014219 1 1 1 83 4 28972751 28975163 TGGAAAGAGTGATGGTTTCCA 60 28975206 28975226 CCTTCACTAGAGGGTCTTCTC 59 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140,ENSRNOT00000077898 1 2 2 80 2 203403904 203413031 TCTCTTTCTCTGTCTAACTAAGCTC 60 203403848 203403867 CCTTCGGTTCTGTACAGAGG 60 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525,ENSRNOT00000066934 2 2 2 80 9 93183044 93183063 TTTCTTCCCTTCTATGCCCT 59 93183106 93188807 CCAAGAATCCTGGAAGAGC 58 NA Rattus norvegicus 81 Magohb ENSRNOG00000010316 ENSRNOT00000064420 3 1 1 81 4 165518282 165518303 GACAGTGAAATTACAAAGGAGG 57 165515886 165518243 CGATTACGATTTCAAGTTCCTG 58 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 3 2 2 80 13 67074211 67085160 CTCCATTCAAGGAACTTCTGC 59 67074151 67074172 ACACGTAAGGATCAATCTTTGG 59 NA Rattus norvegicus 81 Cacng7 ENSRNOG00000056257 ENSRNOT00000089944 2 1 1 84 1 64399688 64400053 ATATTCTGAAGACAGTACGCAC 58 64399625 64399643 ATGTTGCTGATGACGAAGG 58 NA Rattus norvegicus 81 Spock1 ENSRNOG00000012747 ENSRNOT00000061187 3 1 1 80 17 7796318 7797164 AAGCTGTGAAGAGGAGCAG 60 7797208 7797226 TCGTCGTCTAGGTCATCCA 60 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539,ENSRNOT00000085475 1 2 2 85 11 88176633 88176652 GAGTCCTTCTAACTGGGCTG 60 88173968 88176587 GGCATGTTCATATTTCCACCC 60 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539,ENSRNOT00000085475 2 2 2 85 11 88176633 88176651 AGTCCTTCTAACTGGGCTG 59 88173967 88176586 AGGCATGTTCATATTTCCACC 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 1 2 2 80 8 116443729 116443747 ATGTTAGAGGAGGTGGAGG 58 116442987 116443174 ATACAGTTGTTGCCTCTTGG 58 NA Rattus norvegicus 81 Ccdc149 ENSRNOG00000024454 ENSRNOT00000034411 3 1 1 80 14 60929135 60935583 GGCAAACCAACAGAATCCT 58 60935626 60935645 TCCACAAACCAGAAACTTCC 58 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 3 2 2 81 2 200617477 200619808 CTAGATGTCAATGTGAAAGGTACTC 59 200617420 200617438 AGCTGCTGTAGATGAAGGC 60 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000088379 3 1 2 133 4 122131435 122131453 GGCATCTTCAGGGTACCAG 60 122131548 122178604 CATAGTTCTTGAGCTGCAGAC 59 NA Rattus norvegicus 81 Omd ENSRNOG00000046658 ENSRNOT00000074323 2 1 1 74 17 14636908 14636932 CCAAGGAATTTGGAACATCTATACC 60 14636115 14636135 AGAAGGACACATCATTGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Abcd2 ENSRNOG00000015538 ENSRNOT00000021064 1 1 1 80 7 132342078 132342096 ACTTGCGGTATGTTCACTC 58 132340470 132342037 GCTTCATTTCTACCTTATGTCC 57 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000050393 ENSRNOT00000051137 2 1 1 60 7 36290252 36290271 TCAGAATCAAGCGATTCCTG 58 36290292 36290312 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hacl1 ENSRNOG00000019630 ENSRNOT00000026588 2 1 1 80 16 7722198 7726541 GGAACTGCTACAACAATCCC 59 7722137 7722155 TTTGCCTCCAAATGCAGTC 59 NA Rattus norvegicus 81 Myl12a ENSRNOG00000015278 ENSRNOT00000021048 3 1 1 127 9 119328281 119332864 CTGAGCAGGGATTTAACCG 58 119328172 119328190 TTGAACTCCTGGATCTGGG 59 NA InUTR Rattus norvegicus 81 Tes ENSRNOG00000051952 ENSRNOT00000091095 3 1 1 80 4 44321969 44342089 ATGAAGAAGATGGGCTTAGGT 59 44342129 44342149 TTCAAACCCTTCACAGTTCTC 59 NA Rattus norvegicus 81 Nlrp10 ENSRNOG00000015082 ENSRNOT00000020393 2 1 1 99 1 173525480 173528918 CATCTGTACAGTGGCTGGA 59 173525399 173525417 TCCTCAAGGTCGTTCAAGG 59 NA InUTR Rattus norvegicus 81 RGD1564420 ENSRNOG00000009739 ENSRNOT00000013315 3 1 1 80 7 99650643 99650662 CAATCCCAAGATCCTCTTCC 58 99647388 99650601 AGCATTTGCTTGAACATCTC 57 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 1 2 18 80 1 43637347 43637369 CCCAGATCTTTACAGGATATCCT 59 43637409 43697833 CACAGGGTCTAGGTCTGTC 59 NA Rattus norvegicus 81 Psma1 ENSRNOG00000011745 ENSRNOT00000015946 2 1 1 80 1 183739040 183739803 AATTGGAAGCAAGACCCAG 58 183738978 183738997 TCATAACCAGCAATGAGCAG 58 NA Rattus norvegicus 81 LOC100910531 ENSRNOG00000026277 ENSRNOT00000024322 2 1 1 80 3 121547914 121548559 AAGCAAGGAAGAAGACGAC 58 121548601 121548621 CTCAGTATTGACTTGACACCA 58 NA Rattus norvegicus 81 LOC100363294 ENSRNOG00000052628 ENSRNOT00000088432 1 1 1 82 18 27555781 27555799 ATCTCCTGGATAACTGGCC 59 27555845 27557479 CAAGTATGCAAACTGGGCC 60 NA Rattus norvegicus 81 LOC100911398 ENSRNOG00000047820 ENSRNOT00000071262 3 1 1 60 10 44860949 44860968 ACACTTTCCTCTTCACAGTC 58 44860989 44861009 GTGATGTTTCCTATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam19a2 ENSRNOG00000004180 ENSRNOT00000005537 1 1 1 80 7 66056896 66058051 GTGTGGATGCATCCATAGTG 59 66056835 66056856 GAAGGACTTTACATTCCTCTCC 58 NA Rattus norvegicus 81 Ascl2 ENSRNOG00000020434 ENSRNOT00000027688 3 1 1 204 1 216155859 216156147 GGAATCGCACTTTAACTGGT 59 216155674 216155692 CATCAAGCTTGCATTCAGC 58 NA DesignRelaxed Rattus norvegicus 81 Slc25a47 ENSRNOG00000003020 ENSRNOT00000004070 2 1 1 81 6 132766672 132766691 CCTTTGCCACCTACTTTCTC 59 132766735 132767090 CCTAGGACATCTGGCTGAC 59 NA Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161,ENSRNOT00000057061 1 2 2 80 5 134737113 134737131 CATTGGTGTCTCTGTGTCC 58 134737175 134738136 AAGATGAGGAGCCCAAGTC 59 NA Rattus norvegicus 81 LOC100363384 ENSRNOG00000001566 ENSRNOT00000002131 1 1 1 60 11 28870118 28870137 AACTACTATGGTGGCCTTGG 60 28870077 28870095 CATAGCCATAGCCCAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pyy ENSRNOG00000020877 ENSRNOT00000028323 3 1 1 189 10 90048644 90049056 AGCTGTAGCTGCTATGGTG 60 90048473 90048491 GACCAGGTTGAGGTAGTGG 59 NA InUTR Rattus norvegicus 81 Trabd ENSRNOG00000029095 ENSRNOT00000052087 2 1 1 80 7 130064492 130065041 TGTAGTGAAGACTATCCGGG 58 130065083 130065102 ATCTTCAGCATGGAAACACG 59 NA Rattus norvegicus 81 Bod1l1 ENSRNOG00000050437 ENSRNOT00000070998 1 1 1 80 14 73762126 73762147 AAAGTGCATAGCCAAAGTACTG 59 73762187 73762286 ACTTATTTCCTGGGCTCCTC 59 NA Rattus norvegicus 81 Copz1 ENSRNOG00000036835 ENSRNOT00000065270 1 1 1 80 7 144916102 144916121 CTCCCTGTACACTGTCAAGG 60 144916161 144917748 TAGGTGTCGTCATAGTACTTGG 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195,ENSRNOT00000083764 2 2 2 80 9 17203135 17203154 ATGAGATTCAGTCTGGACGA 58 17202786 17203093 TGTAATTCACCACCTCTCCC 59 NA Rattus norvegicus 81 RGD1561919 ENSRNOG00000033451 ENSRNOT00000047417 2 1 1 60 19 14093425 14093444 GATCACCATCATGCAGAACC 59 14093465 14093485 CTGTCTGTTCAAGAACCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plac9 ENSRNOG00000011263 ENSRNOT00000014964 3 1 1 84 16 3862581 3862600 AGAAGATCTAGCTTGGAGCC 59 3862647 3865019 CTTCTCCACCGTCTCTTCC 60 NA Rattus norvegicus 81 Tas2r143 ENSRNOG00000026817 ENSRNOT00000031943 3 1 1 60 9 118333208 118333227 CCCTTACTGTCTTCATCACC 58 118333247 118333268 GTACTAGAAATTATCAGGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299,ENSRNOT00000001301 1 3 3 80 12 36734562 36736093 CTATGTCTACAGGGAGTTCAG 57 36736133 36736153 CTTCGGTTCTCTATGTAGGAC 57 NA Rattus norvegicus 81 Nr2c2ap ENSRNOG00000022247 ENSRNOT00000060012 2 1 1 160 16 21038775 21038793 TGTCACATAGAGGTGACCG 59 21038236 21038652 TAAGCACAGAACTGACCCTG 60 NA InUTR Rattus norvegicus 81 Anapc1 ENSRNOG00000016965 ENSRNOT00000055875 2 1 1 80 3 121165047 121165066 AGATGAACTATGGCTTCCAC 57 121163597 121165005 TGCTCAAAGAGTACCTTCCT 58 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000078030 2 1 2 89 1 215536558 215536576 CCTCAACTTCTGTTGCCTG 59 215515826 215536505 AGACAGCCTTTCTTCCCTG 59 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 1 1 1 60 7 122456931 122458215 GATAATCTCACATTGCCGGG 59 122458236 122458256 TGATGTTGATGTAGGAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000074947 1 1 2 71 6 142676387 142676405 CTCCTGTCAGTAGCTGCAG 60 142635584 142635602 AGGCTTCACTAGTTCAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3bgrl3 ENSRNOG00000015967 ENSRNOT00000021734 1 1 1 80 5 152357945 152358474 GCTCTCGTGAAATCAAGTCC 59 152357884 152357903 TGTCCACTAGCTGGTATTGG 59 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 3 2 2 80 4 155667181 155667202 CCTATTGGACAATTGACACCTG 59 155667243 155667411 GGGAGTCTTGGGATAGGTC 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784,ENSRNOT00000080304 1 3 3 80 6 136084563 136084582 TGTTCGAGGTCATTGAAACG 59 136084619 136091094 CCAAATAGTCAAATACTTCACCTCC 60 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784,ENSRNOT00000080304 2 3 3 80 6 136095808 136095826 TCCACAGACTGTGAGAACC 59 136095867 136096088 CTTCATGATTTGCTCCAGAGTG 60 NA Rattus norvegicus 81 Tesb ENSRNOG00000039398 ENSRNOT00000079194 2 1 1 80 20 4206253 4206272 CCAACTGGTGTTTCTGTAGG 59 4207430 4209309 TTGGAATAGAGCAGGATTGGA 59 NA Rattus norvegicus 81 Ipcef1 ENSRNOG00000018163 ENSRNOT00000024460 2 1 1 81 1 43617385 43637235 TGGCAATCAATTGGCAGAG 59 43617322 43617341 TTTCTTGCATTCAGAGGCTC 59 NA Rattus norvegicus 81 Pik3c2a ENSRNOG00000020479 ENSRNOT00000055120 1 1 1 80 1 185234476 185234495 ACTGTAACAAGAAGCCAGTC 58 185234537 185252587 TGGGTCTTTCTGAGATACCT 58 NA Rattus norvegicus 81 Gprc5d ENSRNOG00000008439 ENSRNOT00000011141 1 1 1 103 4 168882572 168882590 GATGGAGAACCAGGAACCC 60 168873181 168874649 GATCAACAGTCTGCAGCTG 59 NA Rattus norvegicus 81 Cnot4 ENSRNOG00000010795 ENSRNOT00000040969 3 1 1 80 4 62591368 62592778 CTTCACATCAGAAACAATCCCA 59 62591309 62591329 TCTGGCTGTTTAGAAGAACCA 59 NA Rattus norvegicus 81 Pnliprp2 ENSRNOG00000017982 ENSRNOT00000068119 3 1 1 80 1 279925601 279925619 GATAAATCTCTTCCGGCCC 58 279925661 279927530 CAGAAGTTGTACTCTTTCCCG 59 NA Rattus norvegicus 81 Mir455 ENSRNOG00000036266 ENSRNOT00000054389 2 1 1 60 5 79097223 79097241 GCCTTTGGACTACATCGTG 59 79097265 79097283 TGAGGCAAGTGTATATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Skint4 ENSRNOG00000042047 ENSRNOT00000041421 3 1 1 80 5 132008860 132008878 GAGCTACAGGAGTACTTGC 57 132008919 132014553 CTGTGAATTGTTCTGAACTCAG 58 NA Rattus norvegicus 81 Afg3l2 ENSRNOG00000017965 ENSRNOT00000024632 3 1 1 80 18 63146272 63146290 GGAAGAATTACGACCGGTG 58 63144318 63146230 CATGCCAAACTGAACAATCTG 59 NA Rattus norvegicus 81 Slc23a2 ENSRNOG00000021262 ENSRNOT00000028885 3 1 1 80 3 124657379 124668377 AACATTTGGATGCAGGTTACC 59 124657319 124657338 TCTAAAGACAGGATGGCTCG 59 NA Rattus norvegicus 81 Mir489 ENSRNOG00000036271 ENSRNOT00000054394 1 1 1 60 4 28659572 28659591 GACACGTTCTCGTGTATTCC 59 28659531 28659551 TTCCTGTAACAGTTTAGCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331,ENSRNOT00000088724,ENSRNOT00000088649,ENSRNOT00000090174 1 4 4 80 13 70250061 70250956 CAGCCTCAGGAAGATACCT 58 70250999 70251018 TGACAACTGGAGTCTTTCTG 58 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 3 1 2 136 7 54022268 54022288 GGAGCAGTTATGTGTACACAG 59 54022614 54024194 ACAGATTGAGCTTCACTTCC 58 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 1 2 2 80 6 55423176 55423199 GGCTGATATAACTGGAAGATACTC 59 55423235 55423761 TTCATGTTGTCTATCAGCATGG 59 NA Rattus norvegicus 81 Elof1 ENSRNOG00000014284 ENSRNOT00000019140 2 1 1 105 8 23127091 23127110 ACGAGAAGTCTTGTGATGTG 58 23126582 23126872 TCTGACAGGTATGTGATGGG 59 NA Rattus norvegicus 81 Esyt2 ENSRNOG00000032391 ENSRNOT00000006582 1 1 1 80 6 144208821 144211021 AGCCATTGATGGGATCCAG 60 144211607 144211628 GAAGATTAGTCAGTCCTGTCCA 59 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 2 1 1 60 1 91072755 91072775 GACAACATCCTGTACAGACTG 59 91072320 91072733 ATAAACAGTAGGCAGTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Obfc1 ENSRNOG00000020376 ENSRNOT00000027614 3 1 1 80 1 267287391 267287410 CAGTAAGGACAAAGACCTGC 59 267282045 267287349 CCCTTCTCCACATGATTTGG 59 NA Rattus norvegicus 81 RGD1564053 ENSRNOG00000005375 ENSRNOT00000066254 1 1 1 80 5 7327588 7335027 AGAAAGCGAATCATCAGAACC 59 7327528 7327547 TTCTTTGCATTCATCTGCCA 59 NA Rattus norvegicus 81 Snrpn ENSRNOG00000059764 ENSRNOT00000077253 1 1 1 83 1 195078754 195078772 CATTGGCACCTTTAAGGCT 58 195078181 195078709 TTCTTTGGCTTGATCTTCCTG 59 NA Rattus norvegicus 81 Fam228a ENSRNOG00000050114 ENSRNOT00000070908 2 1 1 86 6 30087013 30088269 ACAAATGAACCGACCAAACC 59 30088318 30088336 GTAACTGGGTCCCTTTGCT 60 NA Rattus norvegicus 81 Hmgcll1 ENSRNOG00000011193 ENSRNOT00000014926 1 1 1 80 8 83114877 83131459 AGATGGGTACCACAGATGG 59 83131502 83131521 AAGGACAGGATAGCGAACTC 59 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126,ENSRNOT00000080818 2 3 3 83 3 121828066 121828090 GACTCTCAAAGTCTCAAATACTCAG 59 121826007 121828026 GTTTCCGGAATCTCCTTCAG 58 NA Rattus norvegicus 81 Stxbp6 ENSRNOG00000004198 ENSRNOT00000005618 2 1 1 80 6 65130321 65130340 ATCATTCGTCCGAAGATCCC 60 65129451 65130279 TCTGCAGAATCCCGATTAGG 59 NA Rattus norvegicus 81 Wars2 ENSRNOG00000019508 ENSRNOT00000026458 3 1 1 80 2 201244401 201252713 ACATTCTGTGCTACAAGTCCA 60 201252751 201252773 GAGCTAGATCCTGAACTAGTTCC 60 NA Rattus norvegicus 81 RGD1566053 ENSRNOG00000013378 ENSRNOT00000017909 3 1 1 80 4 65719727 65721744 GCTGGAAGATATTGCTGCTC 59 65719666 65719685 ACCAGATGTAGGAGGGAGAG 60 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 3 2 2 80 7 41194814 41196137 GATTGGCAAAGCAGGTCTG 60 41196180 41196199 ACCCAGAAGGTATCGATCAC 59 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069,ENSRNOT00000044885 2 2 2 84 3 15366353 15366372 GGCAAAGTTTGACGAATGTG 59 15363189 15366309 TTTCACTTTGGTGACCTTAGAC 59 NA Rattus norvegicus 81 AABR07010170.1 ENSRNOG00000061390 ENSRNOT00000092191 3 1 1 170 2 127777834 127777853 CTGAAGTCAAGAGCAAAGCC 60 127770907 127770925 CATGAATGCAGCAGTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07008293.2 ENSRNOG00000048493 ENSRNOT00000072691 1 1 1 60 2 52152984 52153002 AACACATGGAAACAACCCT 58 52153024 52153044 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 3 2 2 98 4 7259172 7259190 ATGACTCTGAACAGGTGGC 60 7259525 7259543 AGATGAGTCGAACCTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000071945 2 1 2 121 6 138550227 138550245 AATCCCGACTGAGCATCAG 60 138549591 138550148 GTCTTTATATCTCACTGTGTCTCTG 59 NA Rattus norvegicus 81 LOC100911959 ENSRNOG00000015409 ENSRNOT00000020785 3 1 1 80 4 157337406 157337424 CCTGACTACCTGGTCATCC 59 157336476 157337362 CTCAATGGACACATCCAGC 59 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000049978 ENSRNOT00000071905 1 1 1 60 2 115152861 115152884 CATTCTTCTCACTATTGTCTCCTC 59 115152902 115152921 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2k ENSRNOG00000027088 ENSRNOT00000030485 2 1 1 103 14 44323288 44323306 AATAGCAGGACCTCCAGAC 59 44305849 44316667 TGATAAACCGGACCTTAGGG 59 NA Rattus norvegicus 81 Gpr162 ENSRNOG00000016143 ENSRNOT00000021670 1 1 1 101 4 157376157 157376451 ATTTACAGGTTCCTTTGTCCC 58 157376076 157376094 CAGACGATGACCACTTGTG 59 NA Rattus norvegicus 81 LOC100359825 ENSRNOG00000033058 ENSRNOT00000043587 2 1 1 60 6 95826644 95826663 TTATGCCCGAGATGAAACTG 58 95826683 95826704 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064867.1 ENSRNOG00000051449 ENSRNOT00000082695 3 1 1 60 6 98665974 98665995 CCTAATAGTAGCACTTTCCACG 59 98665935 98665953 CGATATCTTGGTGTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed2 ENSRNOG00000001053 ENSRNOT00000001397 2 1 1 80 12 37472677 37474849 ATACACAGAGCCATCAATGAC 58 37472617 37472636 CATGGCAACAAGAACAAGAG 58 NA Rattus norvegicus 81 RGD1306271 ENSRNOG00000013729 ENSRNOT00000040391 1 1 1 80 4 65852949 65852970 AATGCAGATTGACAAGATCCTG 59 65851778 65852908 TTCATCCGTGAGCTCTTCC 60 NA Rattus norvegicus 81 Pik3r3 ENSRNOG00000000145 ENSRNOT00000000157 1 1 1 80 5 135120033 135121537 TCCAGATACCAACAGGATCAG 59 135121577 135121597 CTGAGAGTGGAATTCTTGCAG 59 NA Rattus norvegicus 81 Acadvl ENSRNOG00000018114 ENSRNOT00000024973 1 1 1 80 10 56620852 56621277 ATGTGACTGAGTCCATGGC 60 56620790 56620809 TGATGGCAGCTTCTATCTGG 60 NA Rattus norvegicus 81 Acadvl ENSRNOG00000018114 ENSRNOT00000024973 2 1 1 80 10 56620852 56621278 TATGTGACTGAGTCCATGGC 60 56620791 56620810 GATGGCAGCTTCTATCTGGA 59 NA Rattus norvegicus 81 Olr1547 ENSRNOG00000049012 ENSRNOT00000039939 1 1 1 60 11 43465513 43465531 GAATGACCCTCACCTTCAC 58 43465553 43465573 ATCCACAAATGCTAAACTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgsl1 ENSRNOG00000026952 ENSRNOT00000029773 2 1 1 80 13 71260294 71260937 GGATTCAGACTCAAACAGCG 59 71260233 71260255 GAACGAGACATGTCTTCTTTCTG 60 NA Rattus norvegicus 81 Nudt21 ENSRNOG00000042983 ENSRNOT00000026297 2 1 1 81 19 11451533 11451555 CCAATTCGGTAACAAGTACATCC 60 11451593 11455345 ATAGTTGGTAAGTGGGTACAGG 59 NA Rattus norvegicus 81 Coch ENSRNOG00000005286 ENSRNOT00000007365 2 1 1 80 6 72371608 72371626 TTGTCACAGATGGACAGTC 57 72371668 72372817 CAGAGAAGATGGTGATACCTG 58 NA Rattus norvegicus 81 AC096201.1 ENSRNOG00000052304 ENSRNOT00000091812 1 1 1 62 1 67138582 67138605 CTGGAAAGTATCATCCTGAATGAG 59 67141476 67141499 CTGTTGTCGATATGATGAAAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07014259.1 ENSRNOG00000042166 ENSRNOT00000068215 3 1 1 80 14 6221143 6221163 TAGATCCTTCCCAGAAGAGTC 58 6221203 6221421 CCCAGTAATAGCCTATAGCAG 57 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 1 2 2 80 1 91877704 91877725 CTGTGCTGATGATCTTCTTTCC 60 91877764 91878911 TAACTCAAATTCGCCATCCAG 59 NA Rattus norvegicus 81 Mbd6 ENSRNOG00000006209 ENSRNOT00000008854 2 1 1 87 7 70576051 70576280 TTCTTCTCCTGGAGAGGGA 59 70575982 70576000 AGGAACTCGACAAGAAGGG 59 NA Rattus norvegicus 81 Stoml2 ENSRNOG00000009535 ENSRNOT00000013151 2 1 1 80 5 58474890 58474998 CTTACAAGGCAAGTTATGGTG 57 58474830 58474850 CAAGCTCTGATCTCATAGTCG 58 NA Rattus norvegicus 81 Serpinb9d ENSRNOG00000022139 ENSRNOT00000032707 1 1 1 80 17 32516781 32517904 GTCCAGATATCTCAGGCAC 57 32517948 32517966 GTTGTGAAGAAGCAACTGG 57 NA Rattus norvegicus 81 Cd2 ENSRNOG00000015821 ENSRNOT00000021268 3 1 1 80 2 203674506 203679560 ACTTGAGGATTCTAGAGATGGT 58 203674447 203674465 CCAAGACTTCACAGGTCAG 58 NA Rattus norvegicus 81 Parp12 ENSRNOG00000008196 ENSRNOT00000011481 2 1 1 80 4 66883558 66888435 GCTTCCAAGATAAGTGCCA 58 66883496 66883514 GATCCTTCCATTCACCTCC 57 NA Rattus norvegicus 81 Nup85 ENSRNOG00000003673 ENSRNOT00000005035 3 1 1 80 10 104121465 104121484 CGAATCCCATGGAATCTTCG 59 104121526 104123127 CGAACCAATTGAGCTTTCCT 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154,ENSRNOT00000056493 1 2 2 89 4 145453896 145453915 ACCATGGAGGACAAGATTCC 60 145453638 145453845 AGGCTATTGCTGGTCTTAGG 59 NA Rattus norvegicus 81 Myl9 ENSRNOG00000020246 ENSRNOT00000027445 1 1 1 108 3 152862798 152862819 CATGTTCCTCACTATGTTTGGG 59 152862888 152863330 CTCGTGGATGAACCCTGAG 60 NA Rattus norvegicus 81 RGD1562024 ENSRNOG00000042749 ENSRNOT00000065217 3 1 1 165 17 8616884 8617474 AGAGATGGATGCCTTTCCC 59 8616737 8616756 TGTAGTATGGCACGAATCCC 60 NA Rattus norvegicus 81 Diras3 ENSRNOG00000033736 ENSRNOT00000052237 2 1 1 84 6 135939363 135939381 ATCGAAGTAAACCGGGCTC 60 135939297 135939315 TGTACAGGTCCTTGAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrip1 ENSRNOG00000001585 ENSRNOT00000002152 2 1 1 94 11 14700939 14700957 AAGACTCCGGTGACATCAG 59 14665754 14700883 AGAACAGTATCGTCTGTCTCG 59 NA InUTR Rattus norvegicus 81 Wdr5b ENSRNOG00000002253 ENSRNOT00000003068 1 1 1 60 11 67647174 67647194 CACTTTATGGTCACAGTCTGG 59 67647134 67647155 AGACGACTAGAATCTGAAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr5b ENSRNOG00000002253 ENSRNOT00000003068 2 1 1 60 11 67646713 67646733 AGTACTCTTAAACTGTGGGAC 57 67646673 67646694 TATGACCAGTGTATGTCTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr877 ENSRNOG00000043299 ENSRNOT00000066301 1 1 1 60 7 3450798 3450817 CCCATGTACTTCTTCCTCAG 57 3450757 3450776 TAAACGTGGATGTGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817,ENSRNOT00000012222 2 2 2 81 4 7300758 7300776 GCTCAAGAACTTCACCCTG 59 7300511 7300713 AACTGTGGTCTTTCCTCCC 59 NA Rattus norvegicus 81 Glipr1 ENSRNOG00000026644 ENSRNOT00000005399 1 1 1 80 7 54775138 54775159 TGAAGAAAGCCAGTACTATGAC 58 54771131 54775097 TCTGCCCAAACAATCTGAG 58 NA Rattus norvegicus 81 Tmem30b ENSRNOG00000008046 ENSRNOT00000010923 1 1 1 60 6 96441750 96441770 CAACATCACCTACAACTACCC 59 96441710 96441731 GCTAAGGATGATAAGCTTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc7a11 ENSRNOG00000010210 ENSRNOT00000014317 1 1 1 80 2 139466937 139468255 TCCTTTCAAGGTGCCTCTG 60 139466875 139466893 TCCGAGTAAAGGGAGAGGA 59 NA Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 2 2 2 80 10 55631044 55631650 GGATTGTCAAGGTAGACCTG 58 55631692 55631711 TATGTTTGAGCAGCTTGGAG 58 NA Rattus norvegicus 81 Creb3l2 ENSRNOG00000012826 ENSRNOT00000017338 3 1 1 81 4 64889622 64889640 GGAGTCTTGTTCAACCGAG 58 64874377 64889577 TTGCTGAAGGAGAGTCCTG 59 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544,ENSRNOT00000073286 1 2 2 80 8 85795740 85797286 GATCAAAGATACAGATGTCACCG 59 85795682 85795701 TCTTCAGGGTTCCTGATGAG 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350,ENSRNOT00000080382 2 3 3 80 3 29898168 29898186 ATAAGGGAGAGCGTTGTGG 60 29893083 29898126 CTTCATTTCTTCTGGACCGTC 59 NA Rattus norvegicus 81 Trim63 ENSRNOG00000016543 ENSRNOT00000067524 2 1 1 80 5 152538455 152539363 GGACAGAAGACTGAACTGAG 58 152539406 152539424 CAGCTGCGAGATGATAGTC 58 NA Rattus norvegicus 81 LOC100911167 ENSRNOG00000025534 ENSRNOT00000029272 1 1 1 80 X 15380024 15380044 AATGCTTGTGGCTTGTATCAC 60 15380085 15381136 CTTGCTGACAATCATTCGCT 59 NA Rattus norvegicus 81 Agfg1 ENSRNOG00000015619 ENSRNOT00000021309 1 1 1 80 9 88650287 88650305 GACAGCGTGTTCAGTTCTG 59 88650349 88653360 TGTTCCAAAGACACTGCTG 58 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594 1 1 2 80 7 60320827 60320845 GCGAGCATCCACTTAAGTG 59 60320889 60322022 CTGCAGCAGAGATGTATGG 58 NA Rattus norvegicus 81 Krtap3-1 ENSRNOG00000012544 ENSRNOT00000016752 2 1 1 61 10 87484812 87484830 GTTCCTCTGACAAGTCCTG 58 87484769 87484787 GATCTCATGTGGGCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126,ENSRNOT00000014034 1 2 2 80 2 263896108 263940270 GCCGCTATTGATAATGATGCT 59 263940312 263940330 TTCTCCTTTCCCATCTGCG 60 NA Rattus norvegicus 81 Olr1455 ENSRNOG00000045676 ENSRNOT00000070882 2 1 1 60 11 55497261 55497280 GTGGACTTCATTCTTCTCGG 58 55497302 55497321 CAGAAAGCAGGAACAAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1373.1 ENSRNOG00000051176 ENSRNOT00000077008 2 1 1 60 1 136246952 136246971 ACAGATGTGGATCAGGAAGC 60 136246994 136247012 TTGGCAGCAAACAATGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctc1 ENSRNOG00000005357 ENSRNOT00000007447 2 1 1 80 10 55608479 55608499 GGTGTGGAAATGTCAGTTAGG 59 55608540 55608688 GGACAGAGCTTGTAGACCAG 60 NA Rattus norvegicus 81 Tor3a ENSRNOG00000004307 ENSRNOT00000005726 1 1 1 80 13 74270909 74276169 CTTCACAGGCTTAGAATCAGAC 59 74270850 74270868 TTCACTGCTTCTAGGACCA 58 NA Rattus norvegicus 81 Trib2 ENSRNOG00000004110 ENSRNOT00000005774 2 1 1 183 6 41034347 41039404 GGTGTGCAAGGTGTTTGAG 60 41034182 41034200 CCTCAGCTTCTTGCAAGTG 59 NA InUTR Rattus norvegicus 81 Sipa1l2 ENSRNOG00000019791 ENSRNOT00000026843 2 1 1 80 19 58294470 58295580 AGCTGGACAATAAGACGGA 58 58294408 58294427 ACACATGGAACATGAGTTCG 59 NA Rattus norvegicus 81 Sipa1l2 ENSRNOG00000019791 ENSRNOT00000026843 3 1 1 80 19 58302452 58302470 AGAAGGTGGAAGATCCCAG 58 58300720 58302409 GAGTTGTGAGCTCACTTGTC 59 NA Rattus norvegicus 81 Mab21l3 ENSRNOG00000016044 ENSRNOT00000021487 3 1 1 81 2 204245664 204253669 ACTGAGTAAGATGGACCTGAG 59 204245603 204245621 TGTAGTCAGAAGGTGGACG 59 NA Rattus norvegicus 81 Slc13a4 ENSRNOG00000011184 ENSRNOT00000059892 2 1 1 80 4 62799349 62800553 ATCCTATGTACCCTGTCCG 58 62799287 62799306 AGCAAAGGAGATAGACATGG 57 NA Rattus norvegicus 81 Ccnh ENSRNOG00000031656 ENSRNOT00000049423 3 1 1 94 2 13612390 13612409 CCCAGATCTGAAGAAGTTGC 59 13612463 13612833 CCTTTCCTCTTCTTTGTAACCA 58 NA Rattus norvegicus 81 Tkfc ENSRNOG00000020704 ENSRNOT00000028102 2 1 1 80 1 226647200 226647218 GTCAGCACTAGAGATGCGT 60 226646775 226647160 GTTTCAGCATCTATCAGCTTCAG 60 NA Rattus norvegicus 81 Pelp1 ENSRNOG00000019268 ENSRNOT00000026102 3 1 1 80 10 56992354 56992652 AGGAAACAGAGACTGCTCC 59 56992292 56992313 GAGTGTTATCATCTTCTGAGGG 58 NA Rattus norvegicus 81 Akr1b7 ENSRNOG00000009875 ENSRNOT00000013423 1 1 1 80 4 61857935 61857954 CCGTAGTGCTAGAGATTCCC 60 61857995 61858512 GGAATCGAATCAGAACCTGAG 59 NA Rattus norvegicus 81 Gpd1 ENSRNOG00000056457 ENSRNOT00000087662 2 1 1 82 7 141374868 141374886 CTGACCTCATCACGACCTG 60 141374932 141375226 CTGCTCAATGGACTTTCCG 59 NA Rattus norvegicus 81 Fancd2os ENSRNOG00000010177 ENSRNOT00000013503 1 1 1 94 4 145553530 145553910 GTCACACTGACTGTCAATGG 59 145553455 145553473 GAGTAGGTGTTGTATGCCG 58 NA InUTR Rattus norvegicus 81 Prdx1 ENSRNOG00000017194 ENSRNOT00000023132 3 1 1 81 5 135543255 135543692 GTCATCTGGCATGGATTAACAC 60 135543734 135543752 CGCTTGGGATCTGATACCA 59 NA Rattus norvegicus 81 AC126537.1 ENSRNOG00000057901 ENSRNOT00000085758 2 1 1 80 7 117029967 117030296 TGAATGAACTGGGATGCTG 58 117030340 117030358 ATTTGTCAACCCATGGCTC 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160,ENSRNOT00000068444 2 2 2 82 3 79860549 79861114 GAGATGCTGAAGTTTGCCG 60 79861160 79861178 TTCAGGTAGCTTTCGAGCA 59 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991,ENSRNOT00000087241 3 3 3 82 4 58832923 58833947 GAAGGACCAACAACGACTC 59 58832859 58832877 TCTCCATCACTTCCAAGGT 58 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611,ENSRNOT00000042276 3 2 3 94 1 66018244 66020744 CCAAAGAGACATGAAGAGATGTC 59 66020797 66020816 CCAGGAAGATCTCTGTCCTG 59 NA Rattus norvegicus 81 Kdm2b ENSRNOG00000025702 ENSRNOT00000044071 3 1 1 80 12 39093051 39093073 TCTCTTCCGGAGAATAAGAAGTG 60 39093108 39102956 CAGTACATTCTTAACACCTTCCAG 60 NA Rattus norvegicus 81 Strn ENSRNOG00000004806 ENSRNOT00000006527 3 1 1 80 6 1240917 1242438 GATAACCAAGAACTGGGAATCC 59 1240858 1240876 CTTGCTGAACGATGCTACC 59 NA Rattus norvegicus 81 Tada3 ENSRNOG00000008597 ENSRNOT00000011827 2 1 1 80 4 145322957 145322978 GACATGTCTGGGAAAGAATCAG 59 145322401 145322916 ATGTGGCACACTGAAAGGT 60 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 2 1 1 118 1 215704053 215705032 CATGGAGATGACCAGGGTG 60 215705912 215705932 CATTCTTATGGTCCCTCCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912707 ENSRNOG00000049299 ENSRNOT00000040386 3 1 1 60 3 16413122 16413142 GTCTTCATATTCCTGCTGCTC 59 16413347 16413366 ACTGAGTCATCACAATGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 2 2 2 80 2 23322015 23323957 CAGTATAGGCCAAGTTTCCG 59 23323998 23324018 ACCAACTCTTTGCATAACCTG 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 3 2 2 80 2 23301587 23302794 AGAAACTGGACAGGTGGTG 60 23302835 23302856 TTAAATTCGTCCACCCTTTCAG 59 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000090316 2 1 5 84 4 164743611 164743632 CGTGAATGTAAACAGATCTGTC 58 164520723 164743566 GGTCCTGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Atrn ENSRNOG00000021240 ENSRNOT00000028847 1 1 1 80 3 123527216 123531046 CTCAAAGGAACATGTTACTATACCC 59 123531083 123531102 GTAATAGCGGTCGTCTTCCT 59 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786,ENSRNOT00000024465 2 2 2 80 1 255604226 255604335 TTCTGATGAAGTTGTAGCTCCA 60 255604376 255604394 CCTGTTTCGTTCATGTGCT 59 NA Rattus norvegicus 81 AABR07036374.1 ENSRNOG00000001347 ENSRNOT00000001818 2 1 1 132 12 40535049 40535067 TCATGAGGATGTCCTCCTG 58 40535162 40535215 CTTACTGATCGTCTCATGCA 58 NA Rattus norvegicus 81 Fam163a ENSRNOG00000024825 ENSRNOT00000036392 3 1 1 80 13 73746066 73746084 GGCGGAATCCTAGCTACAG 60 73745044 73746024 CTTGCAGCAGTAATACTGGAG 59 NA Rattus norvegicus 81 Slc16a13 ENSRNOG00000018785 ENSRNOT00000025403 1 1 1 80 10 56828953 56828971 GATTTACTGTGGCCTGGGA 59 56828121 56828909 CGGAGGTAGCCTGATAGAG 59 NA Rattus norvegicus 81 Ccdc22 ENSRNOG00000010846 ENSRNOT00000015546 3 1 1 80 X 15753735 15753832 TGCTCTGCATGAGAATTGC 59 15753874 15753894 TCAAGATCTCGAACTTCCCTC 59 NA Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 3 2 2 80 13 73880823 73889866 AAGGAAGAGAATGAGGATGAGG 59 73880764 73880784 CTCATCCCAAATGTCATCACC 59 NA Rattus norvegicus 81 LOC100359479 ENSRNOG00000043383 ENSRNOT00000014965 2 1 1 82 8 55489767 55490073 TCCCTTTGATCACAACAAGGA 60 55489705 55489728 GGAGATAGTTTGCTTTCTCTTCAG 60 NA Rattus norvegicus 81 AABR07005027.1 ENSRNOG00000050468 ENSRNOT00000071333 3 1 1 134 1 175586405 175586423 AGATGTCCACAAGGGTACC 59 175586244 175586310 CTCTAGAATCTCGTTTCTTGGG 58 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 2 2 2 82 4 68640021 68640509 GCATACCAAATGGGTGACG 59 68640555 68640573 TAAGCCACATCTCTGAGGC 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 3 2 2 80 7 15785798 15786679 CAGAGAAATCGGAGAATTCAGG 59 15786720 15786738 CTGTTGGTGGGTCTTTCCA 60 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 3 2 2 90 16 48122373 48210099 GTTACATGACATCAGGTGATGTG 60 48210149 48210167 GCCAAGCAAAGGATTTCCC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 1 2 6 91 12 41264264 41264282 CTGAGCTTCAAGCTGAGTG 59 41262300 41264210 GGGATACAAACATGACCCAG 58 NA Rattus norvegicus 81 Adam4 ENSRNOG00000038275 ENSRNOT00000008367 1 1 1 60 6 105159954 105159975 CAAACCATTGACATCTTCTTCC 58 105159915 105159934 TTCATCCACCACAAGTAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310049 ENSRNOG00000042309 ENSRNOT00000031083 2 1 1 80 1 31044804 31044822 GACTGAGACAAGGTCTGCA 59 31042239 31044762 GCTATGGACTCATCAGAACCA 60 NA Rattus norvegicus 81 Fut2 ENSRNOG00000021011 ENSRNOT00000028519 3 1 1 81 1 101634402 101639593 TTAAATCCAGCAGCCATGG 58 101634339 101634360 AAGTCACGAAGACAAAGATGAG 59 NA InUTR Rattus norvegicus 81 Msh3 ENSRNOG00000013673 ENSRNOT00000018449 1 1 1 80 2 21843852 21849032 CTGTATCAGGACAAGAGTTTATGG 59 21843795 21843813 TTCCAACCTTCACCCAGTC 60 NA Rattus norvegicus 81 Runx2 ENSRNOG00000020193 ENSRNOT00000061014 2 1 1 80 9 18718197 18737580 AGATTACAGATCCCAGGCAG 59 18737621 18737641 TCATCTGGCTCAGATAAGAGG 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 2 2 2 80 10 56856406 56858770 CTATCTTTAAGCTCCTAGTTCCG 58 56856348 56856366 CATCTGAGATGAGCTGGGT 59 NA Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905,ENSRNOT00000057788 2 2 2 82 12 38291554 38291575 GAATCCCATGAAATTTGCTGAG 58 38291618 38292111 CAGACTGAGATTTGTCGCC 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000090638,ENSRNOT00000047472 2 3 6 80 1 41726476 41726496 ATAAGTCTTCAGTGACGTCCT 59 41725989 41726434 TGTCTGTTCCTCCACTCTG 59 NA Rattus norvegicus 81 Tmem230 ENSRNOG00000021263 ENSRNOT00000028886 2 1 1 60 3 124877125 124877144 CAGACGATGGCTACATTGAC 59 124874794 124874814 GCCTTGTAAGGGATCTTAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Dgat1 ENSRNOG00000028711 ENSRNOT00000039795 3 1 1 80 7 117567348 117567367 TCCACTCATGTCTCAATGCT 59 117567210 117567305 ACTCAGCATTCCACCAGTC 60 NA Rattus norvegicus 81 Tbx5 ENSRNOG00000001399 ENSRNOT00000001893 1 1 1 80 12 42104769 42104787 GATGCGACAACTTGTCTCC 59 42104829 42108029 GAGTTCAGGATAATGTGTCCG 59 NA Rattus norvegicus 81 Arrb2-ps ENSRNOG00000052437 ENSRNOT00000090505 1 1 1 60 20 4121316 4121334 CAGCACCATTGTGAAGGAG 59 4121355 4121376 CCTGTAGGATACTAGGATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359978 ENSRNOG00000029776 ENSRNOT00000044381 1 1 1 60 6 142992903 142992923 CTCCAATAACCAAGCATTCCT 58 142992863 142992881 ATATGTGCCAGTATCCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 3 2 2 80 12 40702375 40703017 TTAAAGCAGCATGTGGAGAC 59 40703058 40703078 CTTGACAACAGAAAGCTCCAG 60 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000025104,ENSRNOT00000087534 1 2 2 80 1 165651358 165651378 TCAGAACAGAAAGAGGAAGTG 58 165651418 165654236 TTGACACTTGCCTCTTATCAG 58 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349,ENSRNOT00000056051 1 2 2 80 4 157130079 157130097 CCTCAAGTTCCTGGATCCT 58 157130140 157130452 TTAGCGTAGATCTGGAGCTG 59 NA Rattus norvegicus 81 Loh12cr1 ENSRNOG00000006505 ENSRNOT00000008645 2 1 1 85 4 168440823 168462923 AATCAAAGAGATGGATCTGTCC 58 168462969 168462987 TCTGTTCAGCGTATTTGGC 59 NA Rattus norvegicus 81 LOC100359600 ENSRNOG00000030058 ENSRNOT00000040329 3 1 1 60 6 10643523 10643542 TGGACACTTTCAAACCTCTG 58 10643565 10643583 GCTCAACAGCATCTAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500350 ENSRNOG00000030158 ENSRNOT00000040508 2 1 1 80 4 170370316 170382128 GAACCTATGAAGCAGGAAGGA 60 170382170 170382188 CCACGTGGATATTGTCCCA 60 NA Rattus norvegicus 81 LOC500350 ENSRNOG00000030158 ENSRNOT00000040508 3 1 1 81 4 170370315 170382127 AGAACCTATGAAGCAGGAAGG 60 170382170 170382188 CCACGTGGATATTGTCCCA 60 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336 2 1 2 80 8 57886216 57886234 GAAGCCAGGAAGATCCTCC 60 57886276 57921378 TTGAAGTTTGCTGATCCTGTC 59 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336,ENSRNOT00000089686 2 2 2 113 8 57949085 57949103 CATCATGAGGGAGGAGAGC 59 57953886 57953905 GTAGATTGTTCCTCAGCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC102546963 ENSRNOG00000042788 ENSRNOT00000066846 2 1 1 81 1 236886665 236886683 GAACAGTTTCCCAACCTGC 59 236884626 236886621 GACTTAAACCCTGAGCACTG 59 NA Rattus norvegicus 81 Irs1 ENSRNOG00000014597 ENSRNOT00000019579 1 1 1 80 9 88082227 88082246 CTATGCCAGCATCAACTTCC 59 88034699 88082187 TTTAGGTCTTCATTCTGCTGTG 59 NA InUTR Rattus norvegicus 81 Dera ENSRNOG00000007570 ENSRNOT00000009998 2 1 1 86 4 171821552 171825295 GAAACAAGGTAGGCTTTAAGC 58 171825343 171825361 CCAGTTCCTCCTTTACCAG 57 NA Rattus norvegicus 81 LOC312273 ENSRNOG00000013203 ENSRNOT00000017673 3 1 1 81 4 69192469 69192487 CCACAGTACTGTCCGACAG 60 69191456 69192425 CAGAAGGACTCTCAAAGCCA 60 NA Rattus norvegicus 81 Mff ENSRNOG00000048016 ENSRNOT00000020712,ENSRNOT00000089451 3 2 2 87 9 88496646 88501535 TCAAAGCGAAGAGATCCGA 59 88501586 88501604 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Aldob ENSRNOG00000006807 ENSRNOT00000086505,ENSRNOT00000009111 2 2 2 82 5 64808239 64809111 TTTCTGAGAAGGTCCTGGC 59 64808175 64808193 GTTTGGCTTTAGCAGGGTG 60 NA Rattus norvegicus 81 Ubl4a ENSRNOG00000053061 ENSRNOT00000091810 3 1 1 81 X 156341243 156341261 CCTGGTCTCGGATAAGCTG 60 156341306 156341565 TCGCTTCTCATCTGCTAGG 59 NA Rattus norvegicus 81 Il18 ENSRNOG00000009848 ENSRNOT00000013093 2 1 1 80 8 55013719 55013739 TATCTGTGAAGGATGGAAGGA 58 55013778 55015957 TTTCAGGTGGATTCATTTCCTC 59 NA Rattus norvegicus 81 Mrpl51 ENSRNOG00000019165 ENSRNOT00000025970 3 1 1 98 4 157706592 157706611 TAGAGTAATGGCAGGGAGTG 59 157706672 157706778 AATAGTGGAACGCCCAGAG 60 NA InUTR Rattus norvegicus 81 AABR07055413.1 ENSRNOG00000049415 ENSRNOT00000071785 1 1 1 81 7 2300750 2300832 TGAACAGGACTGTGTCTCTG 59 2300876 2300894 AAGGCAGCTAGAGATGTGG 59 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000065048 3 1 2 114 9 19452877 19454535 TTATTTCTTAGGTGACCATGGC 59 19454610 19454628 CACAGTGTTGATGGTGCTC 59 NA Rattus norvegicus 81 Pde8b ENSRNOG00000010280 ENSRNOT00000044087 2 1 1 80 2 24751070 24779712 GTAGCAAGCAGATCCACAG 58 24748976 24748994 TGCTCTTGTGTCTGAACGA 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366,ENSRNOT00000078044,ENSRNOT00000084602 1 3 3 80 6 3328542 3328562 TGCTGTACCACATAGAATTCC 58 3324224 3328503 ACCTGACCAAAGTTTATCTCTG 58 NA Rattus norvegicus 81 Krit1 ENSRNOG00000007937 ENSRNOT00000032505 1 1 1 80 4 27448510 27448960 GATACTCCATGAGTACAAGAACCT 60 27448453 27448472 TGTAGAAACATGCGTTGCAG 60 NA Rattus norvegicus 81 Defb18 ENSRNOG00000039650 ENSRNOT00000060803 3 1 1 94 9 24467828 24467846 TTTCTGTGTCCTGTGGTCC 60 24467098 24467116 CTTGCATTCACCACCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Corin ENSRNOG00000002302 ENSRNOT00000064128 1 1 1 80 14 38472083 38472102 TTGACATGAAGACCATCACC 58 38472144 38473265 CACTGTCTCCCATACATGAG 58 NA Rattus norvegicus 81 Hebp1 ENSRNOG00000000024 ENSRNOT00000000025 1 1 1 80 4 168932953 168932972 ATCAGGAACTCACTGTTCGG 60 168922831 168932911 ATAGGAGACGTCTTCCTTGC 59 NA Rattus norvegicus 81 Camta2 ENSRNOG00000004283 ENSRNOT00000056622 3 1 1 80 10 57292818 57293183 TTCGAAAGTATAAGGGTCGGAG 60 57292759 57292779 TGTACTTCCGATAACAACGCT 60 NA Rattus norvegicus 81 Cog6 ENSRNOG00000013660 ENSRNOT00000018385 2 1 1 80 2 142220814 142225304 GCCTGTCTTGTACAAGTATACC 59 142220755 142220774 AGAGCATCAATAAACCCACG 58 NA Rattus norvegicus 81 Dek ENSRNOG00000016152 ENSRNOT00000021751 3 1 1 108 17 17973631 17984238 AAGTGAAGAGGAGCAACCA 59 17984307 17984328 CGCCTTCTTAACATTAGCACTC 60 NA Rattus norvegicus 81 Ftsj1 ENSRNOG00000004776 ENSRNOT00000006365 2 1 1 80 X 14999921 14999940 TTATTGTGCCCTTTGTGACC 59 14999981 15000079 AGCCATTGTCTAGATCCAGAG 59 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973,ENSRNOT00000080188 1 2 2 80 10 109581005 109581025 GTTGGATGGATATTCACGGAC 59 109580201 109580966 ATAGGTGTCCTTATTCCGACTG 60 NA Rattus norvegicus 81 RGD1563986 ENSRNOG00000011854 ENSRNOT00000015921 3 1 1 80 4 68573302 68573320 GGAAGTTCGCCTTACTTCG 59 68572601 68573261 AACAGTACACTCTATAGCACAC 58 NA Rattus norvegicus 81 Cpz ENSRNOG00000008947 ENSRNOT00000012109 2 1 1 80 14 80413415 80415752 CATGAACTGATGGAGCCTG 58 80415793 80415814 GTAGATGAGTATTTCCCGTCCT 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 1 1 1 60 2 140708482 140721855 GAATATTTCGCGCACAGCA 60 140721876 140721897 CACAGCGATATGATGAATACGG 60 NA DesignNoJunction Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 2 1 1 60 2 140708480 140721853 GAGAATATTTCGCGCACAG 57 140721875 140721895 CAGCGATATGATGAATACGGA 58 NA DesignNoJunction Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240,ENSRNOT00000082462 2 2 2 80 12 38513499 38513519 GAAGATGAGGAGAAGGAAGGG 60 38512881 38513457 AGGCTTGTCGATCTCATCC 59 NA Rattus norvegicus 81 Sgk2 ENSRNOG00000033573 ENSRNOT00000041688 2 1 1 80 3 159381334 159381354 GGATGATCTGTACCACAAGAG 58 159384622 159384645 TCTGGGTCAAATTTCAAGTCAG 59 NA Rattus norvegicus 81 Oprd1 ENSRNOG00000010531 ENSRNOT00000014084 1 1 1 116 5 150293020 150322739 ATCGTCCGGTACACTAAGC 59 150292922 150292940 TTCCATCAGGTACTTGGCG 60 NA Rattus norvegicus 81 Pebp1 ENSRNOG00000001136 ENSRNOT00000001500 1 1 1 80 12 45028174 45028471 CAAATTCAGGGAGTGGCAC 59 45028515 45028533 TATTCGGAGAGGACAGTGC 59 NA Rattus norvegicus 81 Dok7 ENSRNOG00000022419 ENSRNOT00000035385 3 1 1 83 14 80940796 80940815 TCCTGTTTGACTGCATTGTC 59 80937822 80940750 CAGAACTTGGGTCTGGGAG 60 NA Rattus norvegicus 81 Mirlet7d ENSRNOG00000035594 ENSRNOT00000053717 2 1 1 60 17 16419989 16420008 AGGAAGAGGTAGTAGGTTGC 59 16420030 16420049 TAGTTAACTCCTTGTGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galr3 ENSRNOG00000027060 ENSRNOT00000014349 1 1 1 84 7 120273130 120274024 GGACTGAGGAAGATGGCTG 60 120274072 120274090 CAAAGATCACAGGCACTGC 60 NA InUTR Rattus norvegicus 81 Fam169b ENSRNOG00000022822 ENSRNOT00000040147 2 1 1 80 1 129278835 129278853 ACTGTACCGTGATGAACCT 58 129278895 129297204 AAGTAAACAGCCACAACTGTC 59 NA Rattus norvegicus 81 Sycp2l ENSRNOG00000023831 ENSRNOT00000038180 1 1 1 80 17 21447803 21450030 CTGAGAAAGATGAAGCCGA 57 21447741 21447762 CAGAAATGTTTAGAGGAGTGGA 58 NA Rattus norvegicus 81 Sycp2l ENSRNOG00000023831 ENSRNOT00000038180 3 1 1 80 17 21447802 21450029 TGAGAAAGATGAAGCCGAG 57 21447740 21447761 TCAGAAATGTTTAGAGGAGTGG 58 NA Rattus norvegicus 81 Slco1a2 ENSRNOG00000031249 ENSRNOT00000049569 2 1 1 80 4 176446648 176447981 TAACTTCAGGCGCATTTACC 59 176446587 176446608 AGTATCAGAATGAAGAGTGCAG 58 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 3 2 2 85 10 87328981 87329889 TCGACTCCTCTAAAGACCCA 60 87328915 87328933 CTGGGATGAGACCACTTCG 60 NA Rattus norvegicus 81 LOC501110 ENSRNOG00000033402 ENSRNOT00000036813 3 1 1 80 9 27499831 27499851 ATTTCATTATGATGAGGCCCG 59 27494756 27499793 TTCTCTTCATACTCTACTCCAGC 59 NA Rattus norvegicus 81 Zfp169 ENSRNOG00000017092 ENSRNOT00000022932 3 1 1 80 17 16460530 16468716 CTCTGTTCAGAACCCAGGA 59 16468759 16468778 CACTCTGAGGACTTCTGGAC 60 NA Rattus norvegicus 81 Rn60_10_0862.1 ENSRNOG00000057028 ENSRNOT00000078328 1 1 1 60 10 86337187 86337206 GCTGCTGGTTAGTAACTAGG 58 86337229 86337247 CCTTGACCAGAAGGATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxn ENSRNOG00000008178 ENSRNOT00000050232 2 1 1 80 10 64427823 64427842 ATCCTACCGGAAGATCAAGG 59 64426073 64427782 TTGAAAGACTCCTCTGACCTG 60 NA Rattus norvegicus 81 Adsl ENSRNOG00000018655 ENSRNOT00000025193 1 1 1 80 7 122178840 122179373 TTACCAAAGCTTGCTAGAGTG 58 122179415 122179433 TGTGAAACCTAATGTGGGC 58 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 3 2 2 80 8 116829975 116833487 GGTCCATCCTCAGAGACAG 59 116829913 116829933 GAGATAGCGTATAGAGCGGAG 60 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 2 2 2 89 13 87992078 88000938 GAGCAACTACGGATTTGCC 59 88000990 88001009 TAATTCTCACAGGCAACCCA 59 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076,ENSRNOT00000090114 2 2 2 80 8 58138948 58138967 TAAACAGACAGAAAGCAGCC 59 58139009 58140463 GACATGTGGATTTCACTCGG 59 NA Rattus norvegicus 81 Zcchc7 ENSRNOG00000013078 ENSRNOT00000017707 3 1 1 80 5 60405568 60424048 GTATCACCTAACGACCAAACC 59 60424090 60424108 TTGTAGCAATACACCAGCG 58 NA Rattus norvegicus 81 Zscan22 ENSRNOG00000031113 ENSRNOT00000026305 2 1 1 60 1 65681053 65681073 TGGAGGATATGACTCAACTGC 60 65678681 65678699 TCTTCACGGTCCATTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Jag1 ENSRNOG00000007443 ENSRNOT00000010638 3 1 1 80 3 130082553 130082577 GAGTATTCAATCTACATAGCCTGTG 59 130082350 130082516 GATGTCTTCGGCAGAAATGG 59 NA Rattus norvegicus 81 Ctdnep1 ENSRNOG00000017352 ENSRNOT00000023379 3 1 1 80 10 56594399 56594596 TCATCCTGAAGGTGGTAATAGAC 60 56594631 56594654 CTTCTAAGAAGAAATCCACATGGG 60 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 3 2 2 80 11 27237364 27237382 AACAGCACTGCCAAATAGC 59 27237425 27250682 TGAGCTCCTTCTTCCTTTCC 60 NA Rattus norvegicus 81 Cops7b ENSRNOG00000018723 ENSRNOT00000025411 3 1 1 80 9 93618838 93623444 ATTACATAGCCAACAAGGAGAG 58 93623484 93623503 AACTCACGATGGTAAGATGC 58 NA Rattus norvegicus 81 Cul5 ENSRNOG00000008039 ENSRNOT00000010956 1 1 1 80 8 58216314 58219077 AAGCTTAAAGAAGTGCTCTTGG 59 58216255 58216277 GGTAAGATGAGCTTTGTGATACC 59 NA Rattus norvegicus 81 Smap1 ENSRNOG00000049127 ENSRNOT00000071330 2 1 1 80 9 30075873 30083142 TCTAGGACTTGATGGTCCTG 58 30075812 30075830 TCCAGATCATCACTCAGGG 58 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 1 2 2 80 2 122789883 122790862 GCTCCAAGGTTTGGATCAC 59 122790904 122790924 CATCAGAATCAACCACCTCAG 59 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 1 2 2 80 10 62689403 62689557 TTCCCAGTCAAGATTGAAATCC 59 62689598 62689616 CTCATCGCAACCATTGAGG 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076069,ENSRNOT00000000787 2 2 3 80 20 21857395 21874599 CAGACACTACGAAAGGTTAATCC 59 21874639 21874657 GGTTTGATTGGAGGCAGAG 59 NA Rattus norvegicus 81 AC103514.1 ENSRNOG00000048555 ENSRNOT00000074959 2 1 1 60 10 5183855 5183873 GTGGCTCAAGATACCTGTC 58 5183896 5183915 ACTGTAGGGAATAGTCCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065778.3 ENSRNOG00000048159 ENSRNOT00000073446 1 1 1 89 6 141062409 141062536 GATGTCCAGTGTGAAGTACAG 59 141062340 141062358 CCCTGAGGCTACACAAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rab31 ENSRNOG00000042189 ENSRNOT00000067974 3 1 1 84 9 113386275 113414845 AGATATTAGGGAGGTGCCC 58 113386209 113386227 ATTCTTCGCACTTGTCTCC 58 NA Rattus norvegicus 81 Mzf1 ENSRNOG00000027550 ENSRNOT00000058563 1 1 1 80 1 65523526 65523946 TTGATGGAGAATCCAGAGCT 59 65523988 65524007 CACCTTAGGTAGGAGAGTGG 59 NA Rattus norvegicus 81 Vom2r19 ENSRNOG00000046198 ENSRNOT00000046796 1 1 1 80 1 65413874 65420002 AAATACACAGATGCCAACGTC 59 65420044 65420062 GTTGCCATTCCATCCTTCC 59 NA Rattus norvegicus 81 Ndufaf3 ENSRNOG00000020068 ENSRNOT00000027262 1 1 1 80 8 117352451 117352472 TGGGATCTCATCAGGATATCAC 59 117352309 117352412 CCACCACAACAATCTCTATCC 59 NA Rattus norvegicus 81 Rps28 ENSRNOG00000042886 ENSRNOT00000068323 2 1 1 81 7 18683272 18683379 TGGCTAGGGTAACTAAAGTGC 60 18682351 18682373 GTGTCATCCATAAATTCCACTCG 60 NA Rattus norvegicus 81 AABR07025299.1 ENSRNOG00000047664 ENSRNOT00000072321 2 1 1 80 16 32299434 32299466 CTTTGGCCACATACATGAAGG 60 32299343 32299362 TGACGTTGTAGACTCTTCGG 60 NA Rattus norvegicus 81 Fbrs ENSRNOG00000042728 ENSRNOT00000055003 2 1 1 98 1 198934493 198934850 CTTTGAGGAAACCAGGAAAGTG 60 198935265 198935283 CAAGCTTGTGGGAATCACC 59 NA Rattus norvegicus 81 Lsm11 ENSRNOG00000005450 ENSRNOT00000007267 2 1 1 80 10 31029596 31029616 GATGAGACCTACCGTAAACCT 59 31029147 31029556 CCGATCAAATAGCCTAGTGAG 58 NA Rattus norvegicus 81 Prss40 ENSRNOG00000014001 ENSRNOT00000018758 1 1 1 80 9 41066493 41068948 CTTCCAAATGTCTCGAAACCC 60 41066433 41066451 CTGCTATACCTGGTGGGAC 59 NA Rattus norvegicus 81 Haus3 ENSRNOG00000015255 ENSRNOT00000020576 1 1 1 80 14 81843818 81843836 AATAAGGACGTGGACATGC 58 81843879 81856525 CTCCATTAGCTCCTGATCAC 58 NA Rattus norvegicus 81 Snx20 ENSRNOG00000014202 ENSRNOT00000019130 2 1 1 80 19 19399774 19399793 ATGCATAACAAGGACCAGAC 58 19399836 19401520 CCATCTTGGGCTTCTTCTG 58 NA Rattus norvegicus 81 Cds1 ENSRNOG00000002142 ENSRNOT00000002918 2 1 1 80 14 9422993 9428938 CTGATGCTTCTGGTTCTGG 58 9422931 9422949 GTAGGAGTGGTAGACCCTG 58 NA Rattus norvegicus 81 AABR07007675.1 ENSRNOG00000058886 ENSRNOT00000080942 3 1 1 129 2 23257962 23257983 CGAGGAAGTAAACGATATCGAG 59 23258296 23258315 TTAAAGCTCAGTGACTCGTG 58 NA DesignNoJunction Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796,ENSRNOT00000066244 2 2 2 80 7 117666913 117666933 TGACAACCTTTGAACTTCCTG 59 117666708 117666871 TGGGTGTTTCTTCCTCCTC 59 NA Rattus norvegicus 81 Rhbdf1 ENSRNOG00000020594 ENSRNOT00000027965 2 1 1 86 10 15683679 15683697 AACCACACTAACCACCCTC 59 15683747 15683975 GGAGGTGATCTCACACCTG 60 NA Rattus norvegicus 81 Rnf19a ENSRNOG00000009658 ENSRNOT00000013344 3 1 1 80 7 75062790 75062809 CAGTCAGTGATAATGCCAGC 59 75060864 75062747 TGTTCCCTTCTCTGTCCAG 59 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000068195 1 1 2 88 7 117953565 117954780 ATTTGCCAGACAGACTCCA 59 117954832 117954850 CCAAAGTCAGGAATCTGCC 59 NA Rattus norvegicus 81 Atp5o ENSRNOG00000001991 ENSRNOT00000002732 2 1 1 80 11 32082908 32082926 TCATCTCTGCCTTCTCCAC 59 32082020 32082867 CATCTAAAGGAAATGCTGTGGT 59 NA Rattus norvegicus 81 Tbca ENSRNOG00000048342 ENSRNOT00000073688 2 1 1 81 2 24495036 24499662 CCATTAAGAAGCAGGCAGAG 59 24499706 24499724 GTGTAAGCAGCCTCTAACC 58 NA Rattus norvegicus 81 Ifng ENSRNOG00000007468 ENSRNOT00000009919 3 1 1 83 7 61338979 61341284 CAAGTTCGAGGTGAACAACC 60 61341330 61341348 GATTCTGGTGACAGCTGGT 60 NA Rattus norvegicus 81 Mrap ENSRNOG00000021524 ENSRNOT00000036027 3 1 1 82 11 30904908 30912732 CCAACAAGCACTCCATTGTC 60 30912772 30912795 CATGTAGAGCAGAATGAAGAAGAG 59 NA Rattus norvegicus 81 Actr5 ENSRNOG00000023989 ENSRNOT00000032943 2 1 1 81 3 155129403 155129421 ATGTACCCAGGCATGAAGG 60 155129466 155131243 CAAGCTGAACCTGGAAGGA 60 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 1 2 2 80 7 138477238 138477259 TCTTACTGTGGCAATTCTATCG 58 138476733 138477199 TCATAGATCAAAGACCCTCCT 58 NA Rattus norvegicus 81 Sim2 ENSRNOG00000054203 ENSRNOT00000081834 3 1 1 80 11 34349436 34350732 AATTATGTTCTCACGGAGGTC 58 34350774 34350792 GGACTCCTGGGACTTAGAG 58 NA Rattus norvegicus 81 Olfml2b ENSRNOG00000003018 ENSRNOT00000004117 2 1 1 80 13 89013241 89013259 ATCCTAGGGAACATGCCAG 59 89013302 89017299 CTCTTCATACTCTGGGTGGG 59 NA Rattus norvegicus 81 Ccdc184 ENSRNOG00000021945 ENSRNOT00000031157 3 1 1 100 7 139763108 139763126 AGATCATGACCAAGGACGG 59 139763190 139763208 CATACCGCCGTTATACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy2d ENSRNOG00000007931 ENSRNOT00000010790 3 1 1 80 10 55841369 55841387 ATCATCATGCAGGAGGTCG 60 55840019 55841327 CACCCTCTGTATCACTTCCTC 60 NA Rattus norvegicus 81 Vit ENSRNOG00000004706 ENSRNOT00000006360 2 1 1 80 6 1184695 1201007 TGTTCAGTACGGAGACAACC 60 1201044 1201068 TCTATAGCTGTCTTCAGATCTTGAG 60 NA Rattus norvegicus 81 Ripply3 ENSRNOG00000001684 ENSRNOT00000002289 2 1 1 90 11 34558719 34558737 TGACCAGAACTGAACGTCC 60 34562958 34564675 AAGTAAAGTCTGACAGGATGCT 60 NA Rattus norvegicus 81 AABR07051551.1 ENSRNOG00000058460 ENSRNOT00000074266 3 1 1 114 3 16846458 16846476 GACAGACTCCTGCTATGGG 59 16846797 16846815 AGGAGATGGTAACCCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Prkcg ENSRNOG00000054371 ENSRNOT00000080032 3 1 1 80 1 64423844 64425018 GAGACCTTCGTGTTCAACC 59 64423782 64423801 GGATGTCCTATCCCAATCCC 60 NA Rattus norvegicus 81 Arhgap11a ENSRNOG00000008115 ENSRNOT00000010994 2 1 1 80 3 105287169 105289301 CAATTCTACACCAGTATCAGTTCAC 60 105287113 105287132 CTCATGGCAATTGGTGAGAG 59 NA Rattus norvegicus 81 Spryd4 ENSRNOG00000003127 ENSRNOT00000004173 3 1 1 81 7 2623736 2623754 TGTTGGAACTTGTACCGCT 60 2623330 2623693 CCAGTTTGAAACTGATGCCTC 60 NA Rattus norvegicus 81 Pag1 ENSRNOG00000061328 ENSRNOT00000090023 2 1 1 80 2 94273159 94273177 CCTTCCAGAGAAGGGAGAG 59 94273221 94274188 AATCTGGAGAACTGCTTGC 58 NA Rattus norvegicus 81 Ets2 ENSRNOG00000001647 ENSRNOT00000002247 3 1 1 80 11 36087768 36089276 CTTCACTGGAAGTGGACCA 59 36089318 36089338 CTGATGAAAGACTGACAGGAC 59 NA Rattus norvegicus 81 Nbeal2 ENSRNOG00000027880 ENSRNOT00000056130 1 1 1 80 8 118905759 118905778 CTTGTAGGACCTGAACTGAC 58 118905579 118905716 CATCCGTTCCTCTGAAGAC 58 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 1 1 1 86 3 123849076 123849746 AGTGCCTTGTTAAGTGGCT 60 123849008 123849026 GTTTACTGTGCAACTGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rslcan18 ENSRNOG00000042283 ENSRNOT00000067090 1 1 1 80 2 122866084 122866103 GTCTGGAGCAAAGGAAAGAG 59 122866143 122867469 TATGATGAGGAAACAAAGCTGG 59 NA Rattus norvegicus 81 Rslcan18 ENSRNOG00000042283 ENSRNOT00000067090 3 1 1 80 2 122866080 122866098 ACATGTCTGGAGCAAAGGA 59 122866142 122867465 ATGAGGAAACAAAGCTGGG 58 NA Rattus norvegicus 81 Gdf10 ENSRNOG00000051993 ENSRNOT00000087037 1 1 1 83 16 10250779 10250797 AGAAGTACAACCGGAGAGG 58 10250844 10258757 TCTGGTCGATCACATCCAG 59 NA Rattus norvegicus 81 Ccl6 ENSRNOG00000030021 ENSRNOT00000045867 1 1 1 80 10 70798224 70798585 CCAGGCATCATCTTTGTCAC 59 70798163 70798182 GCTTATGCACGTCTGAACTC 59 NA Rattus norvegicus 81 Pvrl4 ENSRNOG00000004029 ENSRNOT00000005550 3 1 1 80 13 89770397 89770672 CTGTAGAAGTTCTTGACCCTG 58 89770714 89770732 CAATCACACCCACTACGAC 58 NA Rattus norvegicus 81 Cwf19l1 ENSRNOG00000012763 ENSRNOT00000017202 3 1 1 80 1 263903065 263903083 CCGTAAGCTTGAAACCGAG 59 263901122 263903021 CGACATGGTTTCGGTATGG 59 NA Rattus norvegicus 81 Mvk ENSRNOG00000049604 ENSRNOT00000073774 1 1 1 80 12 47918397 47919332 CTGTGGTCCAGTAGCTCTG 60 47918335 47918354 CTCACTTTCCCATTGCTCTG 59 NA Rattus norvegicus 81 Usf1 ENSRNOG00000004255 ENSRNOT00000005811 2 1 1 80 13 89802314 89802332 CAATCAGCTGCCACTTTCC 60 89802376 89802700 CACCCTGTACATCACCTGG 60 NA Rattus norvegicus 81 Usf1 ENSRNOG00000004255 ENSRNOT00000005811 3 1 1 80 13 89804256 89804275 ACTGGATTGTACAGCTGTCC 60 89804317 89804560 GGATTCCACCCTTACTCTGG 60 NA Rattus norvegicus 81 Pth1r ENSRNOG00000020948 ENSRNOT00000028435 3 1 1 83 8 118989360 118989380 ATGAGATGCTCTTCAACTCCT 59 118988588 118989237 TAATCTCTGCCTGCACCTC 59 NA Rattus norvegicus 81 Rrm2b ENSRNOG00000025454 ENSRNOT00000033704 3 1 1 80 7 76774740 76774762 CAATCCAGTACCCTGATATTTGG 59 76763181 76774700 TGGACAAGTCAACCTCCTC 59 NA Rattus norvegicus 81 Hoxc9 ENSRNOG00000016199 ENSRNOT00000021909 3 1 1 81 7 144596463 144596482 CAAGCACAAAGAGGAGAAGG 59 144598284 144598302 CTTCTTCCTTGTGGAACGG 59 NA DesignNoJunction Rattus norvegicus 81 Gorab ENSRNOG00000003861 ENSRNOT00000005148 1 1 1 80 13 81690629 81690648 CAAGAACAACGACTGATGGA 58 81688530 81690586 CCTCCTAGATCTTTCCGCA 59 NA Rattus norvegicus 81 Utp15 ENSRNOG00000016591 ENSRNOT00000022259 1 1 1 80 2 28364193 28364213 ACATTCTGACTATGTGAGGTG 58 28363545 28364154 ACGGTATGATCATATGATCCTG 57 NA Rattus norvegicus 81 Slc41a2 ENSRNOG00000008713 ENSRNOT00000011572 3 1 1 80 7 26559052 26561001 CATGGTTATAAGCAGCATCGG 60 26561040 26561061 GTGTAAACAACAATCCCAACCA 60 NA Rattus norvegicus 81 Tstd1 ENSRNOG00000047123 ENSRNOT00000074035 3 1 1 82 13 89806306 89806814 CACTCAACATCCCTGTGTC 58 89806857 89806878 CTTCTCAGCACAGTATGAAGTC 59 NA Rattus norvegicus 81 Git1 ENSRNOG00000061270 ENSRNOT00000078730 2 1 1 80 10 62662750 62662768 AAAGGCTAGTTGAGTGCCA 59 62662354 62662708 CATTCTTGTGATCAGGCTTCC 59 NA Rattus norvegicus 81 Prnp ENSRNOG00000021259 ENSRNOT00000028881 2 1 1 86 3 124518283 124518302 GAACCATTTCAACCCAACTG 58 124518351 124529332 CATGATGGCTGATAGTCGG 58 NA InUTR Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 2 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244774 GAATCCGGTCTCATAGCCT 59 NA Rattus norvegicus 81 Lhx4 ENSRNOG00000003595 ENSRNOT00000067253 3 1 1 80 13 73351886 73351904 CAGGAGAAGGAGAGCTCAG 59 73349741 73351847 CTCTGAGAGTATTTGATCTTCTCG 59 NA Rattus norvegicus 81 RGD1565533 ENSRNOG00000036796 ENSRNOT00000055192 3 1 1 82 10 89922153 89922172 CATCCTAAGGAGGTTGAGTG 57 89922215 89922768 TATATCGCCTTGAATTCTGCC 58 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 2 1 2 80 10 13808261 13808279 CACTACGCTGAGTACTGGA 59 13808321 13809263 CCATTGATGGCAGATATGTCAG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 2 2 2 85 9 15610529 15610547 TCTTTGGCCTCAAGAACCT 59 15610594 15618404 ATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 RGD1310819 ENSRNOG00000018366 ENSRNOT00000068496 3 1 1 81 9 44197045 44197064 AGAAGAGAAACCTGGGTCAC 59 44196043 44197001 CACAGACTCCTGGACTCTC 59 NA Rattus norvegicus 81 Rdm1 ENSRNOG00000020751 ENSRNOT00000028174 3 1 1 89 10 89540384 89540402 TCTTTCGTAGTTCCCACCC 59 89540453 89540712 CAGAGAATGACTTAAGGCCTC 58 NA Rattus norvegicus 81 Cartpt ENSRNOG00000017712 ENSRNOT00000023869 1 1 1 63 2 30127092 30127110 GTCCCATGAGAAGGAGCTG 60 30126658 30126676 TTCAATCTGCAACACAGCG 60 NA DesignNoJunction Rattus norvegicus 81 Cartpt ENSRNOG00000017712 ENSRNOT00000023869 3 1 1 86 2 30127092 30127110 GTCCCATGAGAAGGAGCTG 60 30126635 30126653 TTCTTCAGGACTTCCTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Arl4d ENSRNOG00000020770 ENSRNOT00000028178 2 1 1 135 10 89578279 89579072 CTGACTGAAGACAACCCAG 58 89579170 89579189 ATTTCAGTCAAGTGGTTCCC 58 NA InUTR Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 2 2 2 80 11 38075286 38077321 ACATGGGATACAAGAACAGC 58 38075225 38075245 CATTCAGCTTCATAAAGCTCG 58 NA Rattus norvegicus 81 Bbs7 ENSRNOG00000015816 ENSRNOT00000021453 1 1 1 80 2 123315335 123315353 CCTGTGGAAAGGTTATCCC 58 123313150 123315293 CACATCAGATCCCTGTAAGAC 58 NA Rattus norvegicus 81 B3gat2 ENSRNOG00000046852 ENSRNOT00000075592 1 1 1 80 9 30068090 30068186 CAACTGCACCAAGGTTCTC 59 30068229 30068248 GTGTCCATGTGGTACTTTGG 59 NA Rattus norvegicus 81 Neto2 ENSRNOG00000016245 ENSRNOT00000021739 2 1 1 90 19 22461414 22480284 CCGAAAGCTAAGATTTACTTGAGG 60 22480333 22480351 TCCCATCATAGACTGCCAC 59 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627,ENSRNOT00000021740 3 2 2 80 3 120639368 120663093 ACTATAAGGTGGTGACCGAG 59 120663136 120663154 CCAGAGACAACGAGATGAC 58 NA Rattus norvegicus 81 Adgrb3 ENSRNOG00000012045 ENSRNOT00000016194 3 1 1 80 9 31342682 31437036 CTCAGACTCACAATAAGAGCA 58 31342622 31342640 AGACCCAACAGAATGAAGC 58 NA Rattus norvegicus 81 LOC691044 ENSRNOG00000028373 ENSRNOT00000057620 1 1 1 80 2 154982606 154988587 GAAAGGAAGTTCTACAGGTTCAG 59 154988626 154988645 CGTAGTCGATTTGGAGACAG 58 NA Rattus norvegicus 81 Il10ra ENSRNOG00000016308 ENSRNOT00000021926 2 1 1 80 8 49568925 49568946 GTGGAATCCCGAATTAACAAGG 60 49564692 49568886 GGTCACGGTGAAATAATGCTC 60 NA Rattus norvegicus 81 AABR07033889.1 ENSRNOG00000046676 ENSRNOT00000074327 2 1 1 66 11 43182377 43182395 GCTTTCTTCACCTGCAGTG 60 43182428 43182447 ACATGAAGAGGAGAGTACCA 58 NA DesignNoJunction Rattus norvegicus 81 AABR07033889.1 ENSRNOG00000046676 ENSRNOT00000074327 3 1 1 67 11 43182378 43182396 CTTTCTTCACCTGCAGTGC 60 43182428 43182449 ATACATGAAGAGGAGAGTACCA 58 NA DesignNoJunction Rattus norvegicus 81 Dfnb59 ENSRNOG00000038165 ENSRNOT00000058093 2 1 1 81 3 63510431 63510452 CCTAGATGCAAATTCACATCCA 59 63510491 63511319 ATGAAATACCGGCTGAAATGTC 60 NA Rattus norvegicus 81 Colq ENSRNOG00000019615 ENSRNOT00000026550 1 1 1 80 16 7632984 7633002 ATGGTAACCCGGATGTGAG 59 7632192 7632835 ACTGAACACCTCTCCTTCTG 59 NA Rattus norvegicus 81 Tm4sf4 ENSRNOG00000016437 ENSRNOT00000022105 3 1 1 81 2 147532530 147533251 GGAGTCTTGATGATCTTCCCT 59 147533294 147533312 AGCTCTCATTACCACAGCA 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 2 3 3 81 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583921 100584973 CATGAAACACCTGAGTGATGAC 60 NA Rattus norvegicus 81 LOC691170 ENSRNOG00000022871 ENSRNOT00000034545 1 1 1 80 7 13323906 13323927 GAACATCAAGTTACAGCATGGA 59 13323966 13335406 ACATTATGGACATCTGGGAGG 59 NA Rattus norvegicus 81 Krt19 ENSRNOG00000014233 ENSRNOT00000019133 1 1 1 80 10 88057483 88057503 TGAGAACTCCAAGATAGTCCT 58 88057210 88057443 TGTTCTGTCTCAAACTTGGTC 59 NA Rattus norvegicus 81 Xirp1 ENSRNOG00000037085 ENSRNOT00000055888 3 1 1 197 8 128708266 128710968 AGAGGCAGAAGAAGGATGG 59 128708087 128708106 GATGTGTTTGTAGAGACGGC 59 NA Rattus norvegicus 81 AABR07052585.1 ENSRNOG00000022637 ENSRNOT00000030978 1 1 1 80 3 63831550 63831569 ACCTATTCTGTAAACGCCAC 58 63831015 63831509 CACTACTTCTTCACCTTGGAC 58 NA Rattus norvegicus 81 Tmem29 ENSRNOG00000049908 ENSRNOT00000073957 2 1 1 87 X 20821688 20833309 GCTATAGAGTCGACAAGCAG 58 20821620 20821638 TTAAGCTGTTCTCTGGCAC 58 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 3 2 2 86 10 90231207 90232777 CAACCTTATGAGCGTGGAC 59 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 RGD1559955 ENSRNOG00000032765 ENSRNOT00000046179 1 1 1 60 9 106914052 106914071 AGGTTTCAGCCCTAGATCAG 59 106914011 106914030 GTCAGCATTTCCTTGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly9 ENSRNOG00000025069 ENSRNOT00000035498 1 1 1 80 13 90020101 90020121 CTACCAGGCTCAAATAATCCA 58 90016694 90020060 TGTAGCTGCTCATAGATGTG 57 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 3 2 2 80 10 88161957 88161975 CCTGGAGATGCAGATTGAG 58 88161309 88161914 CTCAGAGCATTCATCTCCTC 58 NA Rattus norvegicus 81 Olr1351 ENSRNOG00000032545 ENSRNOT00000049910 1 1 1 60 9 99763842 99763862 GGGAGGTAAAGAAACACAGAC 59 99763883 99763902 AGCCACCATATAGAGGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs2 ENSRNOG00000012284 ENSRNOT00000016578 3 1 1 80 9 39860379 39860399 AAGAGGCTACAAGAAGAAACG 58 39796681 39860339 CTCTTCTTCCTTTGCCTTGTC 59 NA Rattus norvegicus 81 LOC499584 ENSRNOG00000033028 ENSRNOT00000040463 3 1 1 81 2 110306391 110307052 GAAAGAAAGGCAAAGCAAGAC 59 110307095 110307113 TCCTCCTCATTTCCTCCTC 58 NA Rattus norvegicus 81 Vom2r54 ENSRNOG00000026094 ENSRNOT00000034654 2 1 1 82 7 16961861 16965911 CCAATGAGACAGATATGAACCA 58 16965954 16965972 TTTCTTGAGGCACTGTCTC 57 NA Rattus norvegicus 81 Zfp494 ENSRNOG00000042772 ENSRNOT00000065954 1 1 1 86 7 18180369 18180387 AAGTGGAAATCCTGTGGCA 60 18175939 18180320 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 Tex12 ENSRNOG00000049470 ENSRNOT00000013014 2 1 1 83 8 54993940 54994816 AATTGGAGCCTCAGTTGTC 58 54993875 54993894 AGAGTCCAGAACACTCAGAG 59 NA Rattus norvegicus 81 Cd164 ENSRNOG00000000304 ENSRNOT00000000334 3 1 1 80 20 46254524 46255529 CTGTTCTGTAATACCTACCACC 58 46258043 46258062 GTAGGTGTAGGAGAGGAAGG 58 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208,ENSRNOT00000035915 3 2 2 82 16 9607724 9607743 AACTTGGCAACTGTCTTTGG 59 9607788 9609870 ACCAAAGATGTGCCTTCCA 60 NA Rattus norvegicus 81 Ccdc125 ENSRNOG00000027410 ENSRNOT00000031385 1 1 1 80 2 30692036 30694457 AAATATGACAGGCTGAACTGTG 59 30694494 30694516 CTTGAGCATCTTTACCTCTTCTG 59 NA Rattus norvegicus 81 Usf2 ENSRNOG00000053725 ENSRNOT00000087381 2 1 1 90 1 89372885 89380510 CAGCACAATGAAGTGGAGC 60 89372813 89372832 TGTCTGCATGACAATCTGGA 60 NA Rattus norvegicus 81 Poc1a ENSRNOG00000037295 ENSRNOT00000038166 2 1 1 80 8 114986475 114986852 GGTACCCAATGTCAAAGGTG 59 114986895 114986913 CCATCACTGCAGAAGTGGA 60 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 1 1 2 80 19 19781792 19781813 ACTCTTCAAACTCTTCATCAGG 58 19779508 19781751 TTGCGTCAGAATCAACGTC 59 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742,ENSRNOT00000089895 1 2 2 80 7 137216412 137216430 ACCAGACCATAGTCTGCTC 59 137216471 137255958 CGTTAAACTCTTCAAACTCTGG 58 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000031367 ENSRNOT00000045153 2 1 1 80 X 158642764 158642788 GCTGAATAGAAATAGTGATAGGTCC 59 158636879 158642729 GTTGACTGGTCATTACAGTAGC 59 NA Rattus norvegicus 81 Ube2g1 ENSRNOG00000010041 ENSRNOT00000013486 2 1 1 103 10 59246994 59247015 CCTATCCATACTGTGGAAACCA 60 59247079 59248243 TCCCTCCATTCTTTCGCAG 60 NA Rattus norvegicus 81 Slamf8 ENSRNOG00000008736 ENSRNOT00000011869 1 1 1 80 13 90974509 90974529 CAATTTCTCTGTGCTGATGGT 59 90971174 90974467 GGTACTGCATCGTACACCT 59 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327,ENSRNOT00000020787 1 2 2 68 1 71384668 71384686 GGGATATGACAGAAGGCCC 60 71383505 71384637 CGGTTCCTAAGGGAATTACC 58 NA DesignNoJunction Rattus norvegicus 81 Metap1 ENSRNOG00000012947 ENSRNOT00000017579 2 1 1 80 2 243758861 243761526 GCTGTACACTTAGCATGCA 58 243758799 243758817 GGTACAGCAAGACTTTGGG 59 NA Rattus norvegicus 81 Pcif1 ENSRNOG00000016870 ENSRNOT00000023202 1 1 1 80 3 161351996 161352014 CCAAGCAACTGTGAACCAG 59 161352055 161352160 GATTCGAGATAACCTGATGGGA 60 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 2 2 2 80 2 149006667 149010014 TTTACAGCGTTTCCAAGGAG 59 149006606 149006626 CTCTCAAATGTTCTGGAGAGG 58 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560,ENSRNOT00000090673 2 2 2 80 7 14357851 14363798 CACCTGTGATTATGGATATGGA 58 14357538 14357557 CCATAGCCATAGCCATAACC 58 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 3 2 2 80 1 68453779 68455329 AGAGCTCAACAGTTATGAAGAC 58 68455367 68455388 ATTGGATGAGACGAATTCAAGG 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000002379 ENSRNOT00000003235 2 1 1 94 X 158094073 158132624 CAGAAGGAGAATCCCTTCCT 59 158132679 158132699 ACCTCCTAGGAACTTGATGAG 59 NA InUTR Rattus norvegicus 81 Eif1 ENSRNOG00000033765 ENSRNOT00000041033 3 1 1 81 10 88228320 88228340 GAAGACCCTTACAACTGTCCA 60 88228380 88228515 GGCAAATTTCTTCTTAAACGCC 60 NA Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 2 1 1 85 8 55604077 55623349 AATCCACAGCTTCAGAGCA 59 55623398 55623416 TCTCAGTAGCTCCTTCACC 58 NA DesignNoJunction Rattus norvegicus 81 Trappc13 ENSRNOG00000012124 ENSRNOT00000016439 2 1 1 80 2 34226788 34227486 CAGCTTCAAAGGATGGCTC 59 34226726 34226749 TTCTTCTAGGTTTACGGTATCTGG 60 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076620 2 1 3 98 20 47044715 47044734 TCATACGGAACATTCCACAG 58 47041789 47044654 TGATACGCACCTTGAAGTC 58 NA Rattus norvegicus 81 Krt31 ENSRNOG00000030344 ENSRNOT00000018176 2 1 1 83 10 87962272 87962290 CAAATCTGAGAACGCCAGG 59 87961916 87962227 TCTGTCTCATACTTGGTCCTG 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453,ENSRNOT00000083915,ENSRNOT00000086967,ENSRNOT00000079684 2 5 5 80 9 28443017 28444529 GTTCTTCAGGTGATTGTCTGG 59 28442957 28442977 TTCCAACAAGATTTGAGCCAC 60 NA Rattus norvegicus 81 Kcne5 ENSRNOG00000019176 ENSRNOT00000025923 1 1 1 75 X 113584197 113584220 GATGCTTATCTCTACATCCTACTC 58 113584145 113584163 GAGTGTAGGCCAGGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il36a ENSRNOG00000005722 ENSRNOT00000007540 3 1 1 82 3 1331671 1331784 GGATAAAGAACTAAGTGCAGC 57 1331827 1331846 TATTGTCTTGAAGGACCCAC 57 NA Rattus norvegicus 81 Ccdc170 ENSRNOG00000024280 ENSRNOT00000035962 3 1 1 84 1 41109628 41109647 CAGCTAGTCCACCTTGAGAG 60 41109688 41112349 CTTTCTGAGTCTTTAGCTTTCTCTG 60 NA Rattus norvegicus 81 Palm3 ENSRNOG00000005729 ENSRNOT00000007535 1 1 1 98 19 25148088 25148552 CGGCTCAAGAGGAAATCTC 58 25148614 25148632 TGATTCTGGGTCCTTGGAG 59 NA Rattus norvegicus 81 Psrc1 ENSRNOG00000020013 ENSRNOT00000055880 1 1 1 80 2 211178198 211179165 CAGTATAAAGAAGGAATCACCCAC 59 211179204 211179222 GTTGGTTGTGCAAGAGGAG 59 NA Rattus norvegicus 81 Psd4 ENSRNOG00000006079 ENSRNOT00000008161 1 1 1 80 3 1507977 1508144 ATGGACAGAACATTGGAAAGAG 59 1508185 1508203 GGAAGTTTCCACCATCCTG 58 NA Rattus norvegicus 81 Nt5c3b ENSRNOG00000016475 ENSRNOT00000080006 3 1 1 80 10 88346935 88346953 GACAGATGAAGGTGTTCCA 57 88344478 88346892 ATCCTTTCAGGAAACCATCC 58 NA Rattus norvegicus 81 Lrrc1 ENSRNOG00000005970 ENSRNOT00000007867 3 1 1 80 8 84723819 84723837 CTCCGTCCACAGAGTTAGC 60 84722001 84723777 CTCTGAAGTGTTCTCGTTTGG 59 NA Rattus norvegicus 81 RGD1564883 ENSRNOG00000029115 ENSRNOT00000041210 3 1 1 60 7 59762790 59762808 AGATTGTCAACATTGCCCG 59 59762748 59762767 GTTCCAGAAAGTTCTCTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Or51t1 ENSRNOG00000048436 ENSRNOT00000072815 2 1 1 60 1 168092238 168092256 TGGAACTTGCTCATGTCTG 58 168092279 168092298 AAGAGTGCAATGGTGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa2 ENSRNOG00000025581 ENSRNOT00000051834 3 1 1 82 1 277727743 277728053 CTATGCAGAGAAGCCAAGC 59 277728098 277728117 CCGTTCTTCAGGATACAGGT 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287,ENSRNOT00000050330 1 2 2 80 2 247326049 247330413 TCGTGTATGTTAATGGTGGCT 60 247330454 247330473 GTTTCTGATATCCTCGCCCA 60 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287,ENSRNOT00000050330 2 2 2 80 2 247326050 247330413 CGTGTATGTTAATGGTGGCT 58 247330456 247330474 CGTTTCTGATATCCTCGCC 58 NA Rattus norvegicus 81 Olr86 ENSRNOG00000021332 ENSRNOT00000028936 1 1 1 60 1 168379453 168379474 ATCCATATTCTTCTTGCCAACC 59 168379492 168379513 AAATAACAGGATTGAGAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdk1 ENSRNOG00000001517 ENSRNOT00000002072 1 1 1 80 3 58555349 58557729 CTATATTAAGGCTCTGTCAACGG 59 58557767 58557787 TTGGTTCTGTAATGCTTCCAG 59 NA Rattus norvegicus 81 Syt13 ENSRNOG00000008000 ENSRNOT00000011459 3 1 1 94 3 81850254 81852160 CTAGGCAAAGATGTCTCTGTC 58 81852216 81852234 GGGTTGATCTTGTGCTTGG 59 NA Rattus norvegicus 81 LOC100361934 ENSRNOG00000034182 ENSRNOT00000045705 1 1 1 60 X 42329201 42329219 CCAAGTATAAGCCTGCACC 58 42329159 42329178 TCATACTCCACAGAGTCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurog2 ENSRNOG00000010972 ENSRNOT00000014570 1 1 1 75 2 231963201 231963219 ACTTTATCACCCGCTAGCC 60 231963258 231963276 GTGCATAACGGTGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crybb2 ENSRNOG00000050023 ENSRNOT00000072683 1 1 1 80 12 49584801 49585807 GACCCATCAAAGTGGACAG 58 49585850 49585869 CAATCTCCATCTTCTTGCCC 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770,ENSRNOT00000078931 3 3 3 80 10 89185623 89185641 AAGTGAAGATGCCAGAGGT 59 89185682 89185782 GATCCTGGATAGTGAACCTCTC 60 NA Rattus norvegicus 81 RGD1309139 ENSRNOG00000020307 ENSRNOT00000027504 3 1 1 80 2 211329802 211330257 TGAGGATATGCAGGGAACC 59 211330301 211330319 GTAGTCCGGGAAGTGATGG 60 NA Rattus norvegicus 81 Vom2r44 ENSRNOG00000010268 ENSRNOT00000013777 3 1 1 80 2 154605256 154615342 GTGTGAAGGGTTTAACTTTCG 58 154615382 154615402 TCTTTCCTCGCATTAATCTCC 58 NA Rattus norvegicus 81 B3galnt1 ENSRNOG00000012019 ENSRNOT00000016012 2 1 1 83 2 166228471 166231375 CTGTGGTTAAGGACCTGTG 58 166228406 166228425 CATCCTATTGGGAATGGCAG 59 NA InUTR Rattus norvegicus 81 Olr689 ENSRNOG00000058318 ENSRNOT00000078664 1 1 1 60 3 78044971 78044992 CACTACTCTTCCATTATGACCC 58 78044932 78044950 CTGCCCAGGATACAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641,ENSRNOT00000061516,ENSRNOT00000061515,ENSRNOT00000061513,ENSRNOT00000084506 3 5 5 80 13 34519196 34519214 GGTCAGAAAGGAAAGAGGG 58 34519255 34521332 TCTTCAATTCTACTCGACTCAG 58 NA Rattus norvegicus 81 Gstm6 ENSRNOG00000019017 ENSRNOT00000025746 3 1 1 80 2 210735720 210735739 GAATGTTTGAACCCAAGTGC 58 210734039 210735677 AGATCTTCTTCAGGCCCTC 59 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 3 2 2 80 10 59578731 59579081 TCAACTTCAGATTTGCCAGG 59 59579123 59579142 CAAAGTGAATCCCAAACACC 58 NA Rattus norvegicus 81 Cyb561d1 ENSRNOG00000052232 ENSRNOT00000087329 1 1 1 103 2 210991305 210991323 CTTTCTGACAGTGCTGTCC 59 210990318 210990336 AGAGTAGGATCGCTTCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Syce2 ENSRNOG00000003279 ENSRNOT00000004404 3 1 1 88 19 25999949 25999968 CAGTCATCTGGAAATGGAGC 59 26000019 26001063 AAGTGGGAACCTCAGACTG 59 NA Rattus norvegicus 81 P22k15 ENSRNOG00000030184 ENSRNOT00000050369 1 1 1 80 3 143429204 143429989 TTCTGTAACATAAAGCGGACTC 59 143429145 143429163 TAGGAGCTTCCTGCATCTG 59 NA Rattus norvegicus 81 LOC100365450 ENSRNOG00000047004 ENSRNOT00000074724 3 1 1 123 3 122929238 122929256 CGAACAGTCTTCTCAACGG 59 122929426 122929444 CTGTTGGGAGAAGTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Sppl3 ENSRNOG00000001178 ENSRNOT00000001562 3 1 1 80 12 47290312 47291191 GCTCACCTCAGAATAAGATTTCC 59 47290254 47290272 TGACTGACAGGGAGAAGGA 60 NA Rattus norvegicus 81 AABR07010583.1 ENSRNOG00000055814 ENSRNOT00000072748 1 1 1 61 2 141422811 141422832 AGAGTCTAATCAGGAGGTTGC 59 141422855 141422873 ACCTGTTCTGTAGAGGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 1 2 2 84 10 59900972 59900993 CCTGAGAATTGAAGATCCTGTG 59 59901038 59903779 GTTGTTGCCTCTGTATCCC 58 NA Rattus norvegicus 81 RGD1305645 ENSRNOG00000023576 ENSRNOT00000036990 3 1 1 118 9 50541693 50541711 GGAATTCCTAGGTGGCCTG 60 50541791 50547732 CTTCAAATTTCGCCTCATCGA 59 NA Rattus norvegicus 81 Polr1b ENSRNOG00000018349 ENSRNOT00000024882 3 1 1 80 3 121646762 121646780 GATAAGGAGCTGGCTCCTG 60 121648934 121648954 TCCATCCAGGGAGGATCTC 60 NA Rattus norvegicus 81 Evc ENSRNOG00000007564 ENSRNOT00000010541 2 1 1 80 14 78217898 78223602 AAGATGCTCCTGAGGTGTG 59 78223646 78223664 TGGGATAGACAACTCTGGC 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 1 4 5 80 8 99639408 99640575 GAACTTCTGGAAGTCTTAACAGG 59 99640615 99640633 AAAGTAAACCCTCTGCCCA 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 2 4 5 80 8 99639409 99640575 AACTTCTGGAAGTCTTAACAGG 58 99640616 99640634 CAAAGTAAACCCTCTGCCC 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076499 2 1 3 146 1 167337332 167347349 CTGAGCTGGTCACTACTTCC 60 167337205 167337225 TATAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 RGD1562036 ENSRNOG00000024788 ENSRNOT00000033929 1 1 1 81 5 148433632 148433650 GTAGCACCATGAGTTCCAC 58 148433102 148433587 AGTAGGCTCCTGAGTTGAG 58 NA Rattus norvegicus 81 Timm50 ENSRNOG00000037638 ENSRNOT00000057096 3 1 1 80 1 85472605 85472808 AATGGCACCAAGATTCCTG 58 85475339 85475360 CTTGAAGTATTTGTATGTCCGG 57 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038,ENSRNOT00000082267 2 3 3 80 3 176488627 176488645 AGTTGGCAGTAAGGGATGG 59 176488689 176489269 CCCTCTAAGGGTCTGTCTG 59 NA Rattus norvegicus 81 Helq ENSRNOG00000002181 ENSRNOT00000002974 1 1 1 80 14 10481571 10484114 GACAAGCCATCAGAAAGAAGG 59 10484153 10484174 CTTTCAGCAAGGAATAAAGCAC 59 NA Rattus norvegicus 81 Popdc3 ENSRNOG00000047102 ENSRNOT00000073259 2 1 1 81 20 50419403 50419583 CCAGTATCTTGTTTGTGTTCGT 59 50419622 50419643 CTATACAGCACGTGGAATTCTC 59 NA Rattus norvegicus 81 Nf2 ENSRNOG00000007948 ENSRNOT00000010690 2 1 1 80 14 85046018 85046036 ATGACTCCGGAAATGTGGG 60 85043218 85045975 CATTTCAGCTTCATCCCTGG 59 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000048074 3 1 2 80 13 111932457 111946979 AACAGGGACCTATTTGACAGG 60 111932397 111932415 TTCTGTGGAAACATTGCCG 59 NA Rattus norvegicus 81 RGD1564839 ENSRNOG00000030278 ENSRNOT00000043590 2 1 1 60 13 53284164 53284182 CTGGTAACTTACGTGCCTG 58 53284206 53284224 TCTCATCCACATTGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chsy1 ENSRNOG00000012698 ENSRNOT00000016939 2 1 1 80 1 127010830 127010848 GGAACTTTCTCTTCGTGGG 58 127010892 127025472 TGGACCATGTTCTGTAAGC 58 NA Rattus norvegicus 81 Hint2 ENSRNOG00000015866 ENSRNOT00000021387 1 1 1 80 5 59150696 59150819 GACCAACAGCTTCTAGGAC 58 59150634 59150654 AAGTCGATACCCATCTTTCAG 58 NA Rattus norvegicus 81 Whsc1 ENSRNOG00000038140 ENSRNOT00000021952 2 1 1 80 14 82128312 82129869 AAGGGACATCAGAAAGGGAG 59 82128251 82128272 TTGATTCTTGCCATACACTCCT 60 NA Rattus norvegicus 81 Polr2a ENSRNOG00000028834 ENSRNOT00000068013 3 1 1 80 10 56341453 56341472 GCTGAGAAATGCAAATACGG 58 56341281 56341411 AAAGAACATGCCAGTAGGTC 58 NA Rattus norvegicus 81 Hmg1l1 ENSRNOG00000034130 ENSRNOT00000047553 3 1 1 60 X 115351211 115351231 ATGCTTCTGTCAACTTCTCAG 58 115351252 115351271 GACATGGTCTTCCACCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddb2 ENSRNOG00000014071 ENSRNOT00000018998 1 1 1 80 3 80036317 80037638 CTCAAACTCTTGCAAGGTCTG 60 80036257 80036278 CCCATATTGTCTCCTGTAACCA 60 NA Rattus norvegicus 81 Pus1 ENSRNOG00000037500 ENSRNOT00000056780 2 1 1 80 12 51941814 51944541 GGATTCTGGGACTGAAGAGG 60 51944581 51944602 GTAGCATGTAGCAATAGGTCCT 60 NA Rattus norvegicus 81 Sppl2c ENSRNOG00000005104 ENSRNOT00000006808 1 1 1 60 10 92247185 92248039 GTGACCAACAGAAAGACCC 58 92248063 92248081 TGAGCTGAGGTTTGAAGGA 59 NA DesignRelaxed Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000086769 2 1 2 80 14 83054460 83061088 AGAATTTCCCAGGTGACAG 57 83054398 83054417 TACATTCTTGTAGGCCACAG 57 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000085735,ENSRNOT00000086769 3 2 2 60 14 83053953 83053971 CTCTTAGCCAAACAAGCCT 58 83053911 83053932 AATCCTCGTTTAATGTGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832,ENSRNOT00000090060 2 2 2 80 2 34895715 34895734 TGAAGAAAGATGCAAGTGCC 59 34816987 34895673 TTCTGAGCTCTTCACTTCGG 60 NA Rattus norvegicus 81 AC132028.1 ENSRNOG00000043149 ENSRNOT00000064006 2 1 1 83 3 77921864 77921889 CTGTGGTAATTCTATGTAGTCCTG 59 77921931 77921949 CACAGGCATCCAGTAAGGA 59 NA Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 2 2 2 80 9 2205346 2205364 CACAGGTGGAAAGATGCAG 59 2205405 2209049 AACATGGTTCCTTTCCTAAGGT 60 NA Rattus norvegicus 81 Olr159 ENSRNOG00000046999 ENSRNOT00000075036 2 1 1 60 1 169645859 169645877 ACCATACCTACTGTGACCA 57 169645901 169645919 TTCACCTTGACATTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf7 ENSRNOG00000005872 ENSRNOT00000008022 1 1 1 80 10 37620606 37620624 CCAAGGTCATTGCAGAGTG 59 37620436 37620563 GAGATAATGCATGCCACCTG 59 NA Rattus norvegicus 81 Olr1572 ENSRNOG00000024527 ENSRNOT00000037311 3 1 1 60 12 13478493 13478512 CCTTACCACCGCTATATTCC 58 13478534 13478553 GAACACGTGATTGACAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd53 ENSRNOG00000017874 ENSRNOT00000024344 3 1 1 81 2 209506082 209506103 CTCCATTATCATGGTAGTTGCC 59 209502339 209506043 AACAAAGAACGACATAAGCAGG 60 NA Rattus norvegicus 81 Apon ENSRNOG00000033466 ENSRNOT00000043908 2 1 1 99 7 2676981 2677165 TTTCAGACAGGACTGTCCT 58 2676900 2676918 GAGTCTTCCATGGAAAGGC 58 NA InUTR Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 1 1 2 77 14 85312078 85312273 TAGGAGCATACGTTGGGAG 59 85312314 85312332 TCGTAGACCAGCACAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 2 1 2 78 14 85312077 85312272 GTAGGAGCATACGTTGGGA 59 85312314 85312332 TCGTAGACCAGCACAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100361913 ENSRNOG00000020628 ENSRNOT00000027998 1 1 1 88 1 87191503 87191521 GAGTTTGACTTGGCTGCTG 60 87191314 87191333 TTTAGAGGACAGTGTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 FAM187A ENSRNOG00000002918 ENSRNOT00000003892 3 1 1 60 10 90990096 90990115 TGTCTTCGTTACCATTCACC 58 90990137 90990156 GAAATTGGGACAACAGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361854 ENSRNOG00000029512 ENSRNOT00000051134 3 1 1 60 X 115495874 115495893 GGACATATCTGAAGCAAGCG 59 115495833 115495852 CAGCTTGACATAGAGCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551,ENSRNOT00000001552,ENSRNOT00000039281 3 3 3 88 12 47204484 47206490 GATCAACATGAACCTGGGTG 59 47206541 47206559 TCATATCTGCTGTCTCCGC 59 NA Rattus norvegicus 81 Rab21 ENSRNOG00000003923 ENSRNOT00000005258 2 1 1 80 7 58273669 58274618 CCTTGCTATATGGGATACAGC 58 58273609 58273628 ATAGCTCCATTCGAATCTCG 57 NA Rattus norvegicus 81 Rp9 ENSRNOG00000029456 ENSRNOT00000065367 3 1 1 80 8 23465462 23469251 AAGTTATGCAGTGTTGGCG 59 23465400 23465421 GGTTGCCTTTGATAAAGAAAGG 58 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893,ENSRNOT00000081376 2 2 2 80 3 5830865 5830885 CTTTCAGTTCTTCTGCAAGAC 58 5829403 5830823 GGCTTGATGTTTGACATGG 57 NA Rattus norvegicus 81 Olr129 ENSRNOG00000025163 ENSRNOT00000034624 1 1 1 60 1 169032133 169032152 GTCCAACAACAGTGATGCTC 60 169032092 169032111 GTGAATCATTTCCAAGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 2 2 2 80 12 52112092 52112110 ATGGTACCTGGAGAACGTG 59 52109594 52112049 GCTTTGCTGTTTCTCACCTC 60 NA Rattus norvegicus 81 Htt ENSRNOG00000011073 ENSRNOT00000058166 3 1 1 80 14 81127096 81127117 CTGAAGAACATTGTTGTCAGTC 58 81125184 81127056 GAGTTTCCATACCAGAGGAG 57 NA Rattus norvegicus 81 Ocstamp ENSRNOG00000019110 ENSRNOT00000025820 1 1 1 108 3 162075527 162076617 CAAATACGATGCCTCATATAAGGTC 60 162075443 162075461 CAACTCCCACTGGAAGGAG 60 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 1 1 1 60 8 36876882 36876903 TGACCTTACTCTGCTATTTGAG 58 36875968 36876565 GGTTTGTTAGCATCACCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Nans ENSRNOG00000008945 ENSRNOT00000012260 2 1 1 80 5 62121683 62123437 TCATCTCGGAATACCAGAAGC 60 62123478 62123497 CTACAGATATGGCGATGCCT 60 NA Rattus norvegicus 81 Dnai2 ENSRNOG00000024523 ENSRNOT00000038852 3 1 1 80 10 103294807 103294825 CAAGATGGATGGGACCCTG 60 103294869 103295791 TCGTCACATACCTTCAGGC 60 NA Rattus norvegicus 81 Sntb1 ENSRNOG00000004821 ENSRNOT00000006423 2 1 1 96 7 95668874 95668892 AGTGAATGGAGCAGACCTG 59 95553563 95668816 CATGTACTTCACTTCCAGCAG 59 NA Rattus norvegicus 81 LOC100912488 ENSRNOG00000048854 ENSRNOT00000040431 2 1 1 60 8 42323339 42323359 ATTACTTCTGTGACATCCCTC 57 42323381 42323399 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910813 ENSRNOG00000048571 ENSRNOT00000071722 2 1 1 80 9 44581146 44586333 TTATTGCTCTCATTGGCACTG 59 44581086 44581106 ATAGACGAGAGTGCACATGAG 60 NA Rattus norvegicus 81 Cryab ENSRNOG00000010524 ENSRNOT00000059127 3 1 1 80 8 55179065 55180112 TCTCAGAGATGCGTATGGA 58 55180155 55180174 TGACTTTGAGTTCCTCTGGA 58 NA Rattus norvegicus 81 Cldn4 ENSRNOG00000001476 ENSRNOT00000002003 1 1 1 60 12 24761794 24761812 ATTATGGTGCCTGTGTCCT 59 24761835 24761854 CCAGAGGGTTGTAGAAGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r76 ENSRNOG00000045587 ENSRNOT00000074923 1 1 1 80 9 7658905 7660675 CCTATTGCATTTACAGAGATCCC 59 7660714 7660733 GCTCTCCAGAATGACTTTCC 58 NA Rattus norvegicus 81 Vom2r76 ENSRNOG00000045587 ENSRNOT00000074923 2 1 1 80 9 7658905 7660675 CCTATTGCATTTACAGAGATCCC 59 7660713 7660733 GCTCTCCAGAATGACTTTCCT 60 NA Rattus norvegicus 81 Aebp1 ENSRNOG00000013720 ENSRNOT00000018846 2 1 1 80 14 86104760 86105759 CCCAACTACGATGACTTGGA 60 86105800 86105820 TTCTTCATCCACCTCTTGTCC 60 NA Rattus norvegicus 81 Star ENSRNOG00000015052 ENSRNOT00000020606 1 1 1 80 16 71038163 71038183 ACTCTATGAAGAACTGGTGGA 58 71037999 71038123 TTCTTCAGGACCTTGATTTCC 58 NA Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069,ENSRNOT00000012258 2 2 2 80 5 154222068 154222514 AAAGCAGACTGAAAGGTGAC 59 154222007 154222028 ATTTCTAGATTGAGGGTCTGGA 59 NA InUTR Rattus norvegicus 81 Prss46 ENSRNOG00000020981 ENSRNOT00000028479 2 1 1 81 8 119126382 119126400 GAATGTACATCTGCAGCGG 59 119126440 119126676 GGGTTCTTAGATCTTTGTAAGCAG 60 NA Rattus norvegicus 81 Rasl2-9 ENSRNOG00000032913 ENSRNOT00000050233 1 1 1 60 1 72272300 72272318 GGAGTATGTAGCCACCCTG 59 72272340 72272360 TCCTCTGTTGGTATGAAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl2-9 ENSRNOG00000032913 ENSRNOT00000050233 3 1 1 60 1 72272259 72272277 ACAACATTCATGAAGCGCC 60 72272301 72272319 CCAGGGTGGCTACATACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000071613 2 1 2 108 12 50397038 50397056 CTGGAGAAGGGTGAGTACC 59 50393155 50396378 TATGCTCCTGGGAATCTGC 59 NA Rattus norvegicus 81 Nipal3 ENSRNOG00000037165 ENSRNOT00000025075 2 1 1 80 5 153816105 153816123 TACGACTCCTCCTTGATCG 58 153814763 153816062 CAGGTAGAAGATCGAACCTG 58 NA Rattus norvegicus 81 RT1-CE5 ENSRNOG00000000723 ENSRNOT00000080987 2 1 1 60 20 4896330 4896348 ACAGATCGTCAAGGGACAC 59 4896288 4896308 GTAGCCTAGCAGATTCCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sapcd2 ENSRNOG00000013069 ENSRNOT00000017466 1 1 1 80 3 2596063 2596158 CTCACTCAGGAGGTGACTG 59 2596201 2596220 AAACAGCTGCTTGATGAGTG 59 NA Rattus norvegicus 81 Olr143 ENSRNOG00000016964 ENSRNOT00000022759 3 1 1 60 1 169240826 169240845 TTCTCGATGATGGAGTCAGG 59 169240868 169240886 ATATGGCCACATAGCGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgdr2 ENSRNOG00000036631 ENSRNOT00000054808 3 1 1 60 1 226993474 226993493 CACTCTTGGAGGAGATGGTC 60 226993514 226993534 TCAATATAGCGGAGGCTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr139 ENSRNOG00000048713 ENSRNOT00000040131 3 1 1 60 1 169183104 169183122 ACCATCCTAACCGTCATCC 59 169183146 169183164 AGAGGAAGAGGTACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Echdc1 ENSRNOG00000011622 ENSRNOT00000015440 3 1 1 84 1 30901237 30901256 TTAATAAGCGTTGCTCTGGT 58 30875639 30901192 CAGTCATCAACCTGAAATCAC 57 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 1 2 2 80 5 154312108 154312228 TTCCATTCGTGGAGAAGACTC 60 154312270 154312288 TCCTCAAACTCCACAGAGC 59 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 2 1 1 66 2 223029604 223044904 GCCATGAGATGTGACATCC 58 223044934 223044952 CTCTGTCTCCCACAGATGC 60 NA DesignNoJunction Rattus norvegicus 81 Scamp5 ENSRNOG00000054008 ENSRNOT00000080012 2 1 1 81 8 62230169 62230187 TACCAAGACTTCGAGGCAG 59 62226311 62230124 CGCTGTTCAACATCCAGAG 59 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000084336,ENSRNOT00000014152 2 2 2 82 1 131449147 131451944 TGTTCACCTCAGATGCCTG 60 131449083 131449101 CTCTTCCAAAGCACACTGG 59 NA Rattus norvegicus 81 Zfp710 ENSRNOG00000014278 ENSRNOT00000064034 1 1 1 84 1 141861588 141861606 TTCGTGTGCACTGAATGTG 59 141861654 141865612 ACTCCTTCACACCCTTGTG 60 NA Rattus norvegicus 81 Olr199 ENSRNOG00000029755 ENSRNOT00000046417 3 1 1 60 1 170125804 170125827 CCTTATCTTGATCACCATCTACTG 59 170125844 170125864 AAGAAACTGGTACATTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gclm ENSRNOG00000013409 ENSRNOT00000018343 2 1 1 84 2 225841542 225841560 AATGTACCATGTCCCATGC 58 225841605 225843283 CCTACAATGAACAGTTTAGCAG 58 NA Rattus norvegicus 81 Map3k6 ENSRNOG00000008936 ENSRNOT00000012463 1 1 1 80 5 151446183 151446310 GGATCAGGAACAGGATTCTC 58 151446353 151446371 GGAGTATGGATTTGTGCCC 58 NA Rattus norvegicus 81 Gk5 ENSRNOG00000010942 ENSRNOT00000067835 3 1 1 82 8 103965305 103965326 GCACGAACTTGTATGTTTAGCT 60 103965366 103980387 TGAAGAGGTCTAACTTCTGAGC 60 NA Rattus norvegicus 81 Npr2 ENSRNOG00000015991 ENSRNOT00000021802 1 1 1 80 5 59145071 59145092 TGGTGACACTTCTTAATGACCT 60 59145130 59146191 CAATGGTTTCCACCTTGTAGAC 60 NA Rattus norvegicus 81 Tal2 ENSRNOG00000028082 ENSRNOT00000035687 3 1 1 61 5 70598341 70598362 CCAGAAAGATCTTCACAAACAC 58 70598384 70598402 AAAGGCGCTGTTAACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pltp ENSRNOG00000016488 ENSRNOT00000022594 2 1 1 80 3 161312403 161312422 TTCTTTGACTCTGCCATGGA 59 161312247 161312360 ATCATTTGGCACCTTGTCC 58 NA Rattus norvegicus 81 Rad23b ENSRNOG00000016137 ENSRNOT00000021629 1 1 1 80 5 72136198 72140381 TAGAACGGTTAAAGGCATTAGG 58 72140420 72140440 CCAGATTCTCGTTCTTCTCAC 59 NA Rattus norvegicus 81 Rad23b ENSRNOG00000016137 ENSRNOT00000021629 3 1 1 80 5 72136195 72140381 CTATAGAACGGTTAAAGGCATTAGG 60 72140416 72140437 GATTCTCGTTCTTCTCACAAGC 60 NA Rattus norvegicus 81 Rpl38 ENSRNOG00000029377 ENSRNOT00000046518 1 1 1 60 8 63119489 63119507 TAAAGTTCAAGGTCCGCTG 58 63119529 63119549 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgra2 ENSRNOG00000012991 ENSRNOT00000017776 2 1 1 80 16 69107617 69118385 GGAGAAGTTGGACCTGAGG 59 69107555 69107573 AATCGTTTCAGCTCTCCCA 59 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000082091 1 1 2 103 16 60426537 60426555 CTTCAGGCTCTCCCATGAG 60 60419314 60419332 TATTCTATGTCCACGGCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279,ENSRNOT00000055030 1 2 2 80 3 176822880 176822898 GATTTCCCTTTCCAGCCCT 60 176822940 176824009 GCCATTCACTTTCTTCTGGAG 59 NA Rattus norvegicus 81 Fam221b ENSRNOG00000025453 ENSRNOT00000029035 3 1 1 80 5 59161747 59161766 AGCAGTTTGATGATCAGGTG 58 59157222 59161706 TGTAGATACCTGTCTGGATGG 59 NA Rattus norvegicus 81 Olr1710 ENSRNOG00000049102 ENSRNOT00000045794 1 1 1 60 20 1198591 1198609 TCCAACTCTCAACCCTCTC 58 1198628 1198651 CCTTACAACACTCTTTATGGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wasf1 ENSRNOG00000047476 ENSRNOT00000073091 3 1 1 84 20 48473720 48473738 GGCATTAAGAACGAGCTGG 59 48468981 48473678 CAGCATATTTACTTAGGCTACTCAG 59 NA Rattus norvegicus 81 RGD1311251 ENSRNOG00000007266 ENSRNOT00000009562 3 1 1 80 8 58004706 58004724 GACTCTGTGATGGAATGGG 58 58004765 58007706 CCAACTTGCGATATAATCATCG 58 NA Rattus norvegicus 81 Aim1 ENSRNOG00000025998 ENSRNOT00000036753 2 1 1 80 20 48949630 48949740 GGCCCATACTAAGTGATTTCTC 59 48949571 48949589 CGATACTGGAGCCTTTGGA 59 NA Rattus norvegicus 81 Ccr1l1 ENSRNOG00000006730 ENSRNOT00000008783 2 1 1 60 8 133128071 133128091 GAAACATGACCAGCATCTACC 59 133128031 133128054 GTGAATAGAAAGACCAGATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909911 ENSRNOG00000048426 ENSRNOT00000072213 1 1 1 60 20 8486476 8486494 GTGAAGGTTCCAAGACGTG 59 8486517 8486536 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563705 ENSRNOG00000034052 ENSRNOT00000047247 1 1 1 60 8 118378216 118378236 TAAGTACGGCAAGAAGATCAC 58 118378176 118378196 CTCAATGAAGTTCAAGCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559903 ENSRNOG00000000607 ENSRNOT00000000745 3 1 1 60 20 17751016 17751035 AACTCCTGTACAAACTCGAC 58 17751056 17751076 AAATATGTCACTGGTCTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi4 ENSRNOG00000006855 ENSRNOT00000009081 3 1 1 80 5 159289196 159293579 CTGGATATCCGTGGCTCTG 60 159289134 159289157 GATGACATCTACAACAACTTCTGG 60 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 1 2 2 80 5 105385354 105385374 AGATTGCCAAGAAGAAATGCC 60 105381455 105385312 TTTCTGCGGCATAATCCAC 59 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000051315 1 1 2 80 20 979492 979510 CCCTGGAGAATGCTTCCTC 60 879268 979451 AGGGCTATGAGAGTATTTCCTG 59 NA Rattus norvegicus 81 Bag4 ENSRNOG00000042560 ENSRNOT00000066901 2 1 1 80 16 71075130 71075153 CAAGAAGTAGAGGAGTTTGGGA 60 71075191 71075212 TTCTAACAGTTCCTTTGTCAGC 59 NA Rattus norvegicus 81 Ddhd2 ENSRNOG00000015501 ENSRNOT00000020832 3 1 1 80 16 71097164 71097183 AGCAGATTGGAAGGGTAGAG 59 71097222 71101393 GCTGCAGATCTATATCTACTCCA 59 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025,ENSRNOT00000018118 3 2 2 82 5 155705920 155705939 TGACAACTATGCAGTCACAG 58 155703124 155705875 CATAATCCTCTTGCCCTGC 58 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 2 2 2 80 5 152099149 152099406 GACTGGAATAAGCTCTACCG 58 152099088 152099107 AAAGTAGAAGGTGTCATCCG 57 NA Rattus norvegicus 81 Tgif2 ENSRNOG00000042374 ENSRNOT00000066341 1 1 1 81 3 152913434 152921917 TGCTGCAGATATGTAACTGG 58 152921961 152921979 TTAGGGTCTTTGCCATCCT 58 NA Rattus norvegicus 81 Fhad1 ENSRNOG00000028064 ENSRNOT00000018953 1 1 1 80 5 160467361 160467381 AGTTCACCATAGTACCCTCAC 59 160466917 160467325 GAGCCATTAGTAAGTCATCTATCAG 59 NA Rattus norvegicus 81 Nipsnap3b ENSRNOG00000010332 ENSRNOT00000013759 3 1 1 80 5 69844212 69844233 CATGGATGAACAAGAGGTTGAG 59 69844272 69847013 TCATAGACTCCTTCCTTGGGA 60 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000080767 2 1 2 80 3 148082851 148091390 CAGGTAATCCTGAGAAATGCTG 59 148091429 148091449 AGTAGACATAGACGCTTTCCT 58 NA Rattus norvegicus 81 Defb29 ENSRNOG00000023195 ENSRNOT00000031683 2 1 1 107 3 148009122 148010117 TTGACAAGACCACAGGTGG 60 148009033 148009052 ATTTCTGGCAGGCATTTCTG 59 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 2 1 1 84 16 75666711 75668089 GGTCCAAAGAAACTCAGGG 58 75666645 75666663 CATGAAGAGCCTACAGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Matn4 ENSRNOG00000014021 ENSRNOT00000018844 1 1 1 80 3 160845220 160845332 GAGAAGCTGTCAGGTCAGG 60 160845158 160845177 AAGGAAAGACCCTCACTCAC 59 NA Rattus norvegicus 81 LOC499843 ENSRNOG00000032177 ENSRNOT00000040741 2 1 1 80 3 90721217 90723086 TGTAGAGGTTGACAAACCAC 58 90721156 90721176 CACTCATATCTGGCTCTTGTC 58 NA Rattus norvegicus 81 Carkd ENSRNOG00000015021 ENSRNOT00000065043 2 1 1 81 16 83334607 83335573 GCTGTCAAGAGTACACAGGA 60 83333940 83333961 CAGAATACGTGGGTCAAATCTG 60 NA Rattus norvegicus 81 Zgpat ENSRNOG00000014235 ENSRNOT00000019084 1 1 1 80 3 176879227 176879246 CTTACTACAGACTGGCTCTG 57 176879289 176879541 TTGTCCACATCAGTGATCC 57 NA Rattus norvegicus 81 Kcns1 ENSRNOG00000013681 ENSRNOT00000018364 3 1 1 258 3 160559509 160559738 CTATAGCCCTGCAAGGGAG 59 160559269 160559287 CCGATCGAAGTAGAACTCG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Dusp26 ENSRNOG00000011518 ENSRNOT00000015725 3 1 1 75 16 64801766 64801784 GACTTTATCCATCGGGCAC 58 64799578 64799596 CAGATCTGCTCACTCCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Pck1 ENSRNOG00000028616 ENSRNOT00000031586 1 1 1 80 3 171214463 171214854 ATATGACAACTGTTGGCTGG 58 171214896 171214915 TCTTGGGTAATGATGACCGT 59 NA Rattus norvegicus 81 Pck1 ENSRNOG00000028616 ENSRNOT00000031586 3 1 1 80 3 171214462 171214854 AATATGACAACTGTTGGCTGG 59 171214895 171214914 CTTGGGTAATGATGACCGTC 59 NA Rattus norvegicus 81 Sp9 ENSRNOG00000028187 ENSRNOT00000030460 1 1 1 78 3 59983406 59983424 TCTCCAAGGTGCATACGAC 60 59983466 59983484 TTGTACCACGACTCGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000035128 3 1 3 81 16 75479377 75479396 GATATGGTCATGGAGGACCA 59 75478799 75479334 CCTTCACAACTGCATCTTGG 60 NA Rattus norvegicus 81 Prrg3 ENSRNOG00000045663 ENSRNOT00000074955 1 1 1 65 16 69961010 69961031 AGAGGTCAAGGAAGTATTTGAG 58 69960581 69960599 GCATTTGGGTATCCCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 3 2 2 91 16 81113990 81118889 CACAGCAAGTGGTGATTGG 60 81118943 81118962 CACAAAGTGAGTGTTGGGAG 59 NA Rattus norvegicus 81 LOC100912267 ENSRNOG00000046517 ENSRNOT00000047252 2 1 1 60 16 7411962 7411983 TGTATTTGGATTCAGAACCCAC 59 7411923 7411942 ATAGATCATGCCAAAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tktl2 ENSRNOG00000014185 ENSRNOT00000018987 1 1 1 60 16 24949752 24949770 TATCCAAAGTGCCAAAGCC 58 24949710 24949729 TTCTCGGTAGTGATCTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifih1 ENSRNOG00000006227 ENSRNOT00000009620 2 1 1 80 3 48582292 48582311 TGCTTCGATGAAAGTCTTGG 59 48576351 48582254 GGTATCTTCATCTGAATCACTTCC 59 NA Rattus norvegicus 81 F10 ENSRNOG00000033444 ENSRNOT00000026677 3 1 1 80 16 81811045 81812756 CTGTGAACTCTTTGTTCGGA 58 81810984 81811002 ACTGAGTTCTGCTCCTCAC 59 NA Rattus norvegicus 81 Nup35 ENSRNOG00000009290 ENSRNOT00000012628 1 1 1 80 3 67894570 67894589 CACTCCTAGGGTTTCTACCA 58 67894628 67895891 CGGTCAGAAATAACCTGATAGTC 59 NA Rattus norvegicus 81 Mk1 ENSRNOG00000019657 ENSRNOT00000026601 2 1 1 60 16 20532203 20532221 GCTACAAGGATTTGCCCTC 59 20532161 20532182 GTAATGCTAACGAAGTTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam171b ENSRNOG00000004783 ENSRNOT00000006504 1 1 1 80 3 71257819 71260231 CCAAGCACTTTAGATTTGGGT 59 71260272 71260291 TAGGATGGCTGTAAGGAACG 59 NA Rattus norvegicus 81 LOC685135 ENSRNOG00000030778 ENSRNOT00000044934 2 1 1 63 16 48513580 48513598 GTGTGATTAGCAAGGCCAC 59 48513625 48513643 GGCACGTTCCCATTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000038543 1 1 2 87 2 178282778 178296813 CTCAATCACAGTTGGTCGTG 59 178282710 178282728 CTTGTCTGCCTCTCCTCTC 59 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 3 3 3 80 3 3828460 3829616 CATCTATAAAGCAGCTGGTGTC 59 3828401 3828425 CAGTAATTCTGTCGATAGACTTGAG 59 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000089303 3 1 2 92 2 52514611 52514629 ATATCACCAGCAAGTACCG 57 52514435 52514555 TCATGTGTTCCTGTTTGCT 58 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000076134 2 1 2 105 3 37946949 37946967 GTTCTAGGGTGAAGACCGA 58 37939187 37946880 CTTTGTGCTCAGACGAGTC 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 2 2 3 80 2 219090123 219090141 CACTCTTACCTGTGCACAG 58 219087871 219090082 CTTAGGGAATGAGTAGATGTCC 58 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962 1 1 2 86 15 38113513 38115028 GGGTGAATACATCAGAAGTATTGG 59 38113450 38113468 TCACTGTCCAACAAACGGT 60 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962,ENSRNOT00000014820 3 2 2 80 15 38122146 38130863 TTTGGACGAATGAACCAACAG 60 38122086 38122106 AGAACAGGAACAGAACATGGA 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000046069 1 1 2 80 2 57209107 57209125 ATCAGCACCATCCGAAGAG 60 57210078 57210099 AACACCCATTGCAGTTACAC 59 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900 2 1 2 80 2 30221592 30228295 GTAAGACTGGGAGGGAGTG 59 30221530 30221548 GTTGTCGATTCGGTCTCTG 58 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000035125 3 1 2 150 1 56163446 56168109 GTCACGGCTAAGGAGACAG 60 56162275 56163335 ACTCAGCTCATAGAAACCTGAG 60 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 1 2 2 80 2 30361889 30361910 AGTGATGATTCTGACATTTGGG 59 30361949 30362147 TAGAGCATGCTTAAAGGAAGC 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000059868 2 1 2 81 8 47339335 47393022 TATCACGGACAGGTTTCCC 59 47337895 47337918 CTGTTTCTTATCTGTTGGTGACTC 60 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000011317 2 1 2 82 X 1766251 1769880 GAGCAAAGTGCAGAGATCC 59 1766187 1766206 GAGGATTTGTTCCGCATCAG 59 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000080147 3 1 3 82 14 86159497 86159515 TGAAGAAGGTGATGAGCCG 60 86158978 86159452 GAAAGTCTCCGACTTCTCCT 59 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000067506 3 1 2 80 4 179415809 179421318 GAGTTAGGAACGACAGAGGAG 60 179427543 179427561 CATGGATGCTTTGGGAGGA 60 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000087709 1 1 3 80 15 43019950 43020953 ATATGAAGCAGATACGGTAGAC 57 43020993 43021012 CCCGAGGTACACTTATTCAG 58 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 1 1 1 60 X 54821398 54821420 AGTGGAGGTTAACTCTATACCAG 59 54822116 54822134 AGGCATCATACACCAAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375 3 1 2 89 6 22266550 22266568 GTACGAAAGAGCTAGACGC 58 22257351 22266497 ACTGCTCCACTTTCTAGGA 58 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 3 2 2 80 3 6465058 6465076 ATGTTGCCTACCGAGTCTC 59 6465118 6471268 CCTCAGGAAAGTCAGACTCAG 60 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000083779 2 1 3 80 5 22763285 22764812 GAAGTTCTAGCCAAAGCGA 58 22761614 22761632 ATCTGCGTCATAGACTCCT 58 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 2 2 2 82 1 137961440 137966296 GCTGGGAAAGAAGATGATGAC 59 137966339 137966358 AGTTCCTCCTCAGGTAAGTC 58 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 2 2 2 83 9 62311727 62311745 CAAAGGAAGGCTTGAAGGG 59 62311790 62347595 CTCCTTGTCCCTTCAATACAG 58 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271 3 1 2 80 15 45875739 45879510 TTCTCCCACACTACCACCT 60 45875677 45875698 TTGTCAATAACCATTGGCTCAC 60 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073 3 1 2 115 1 196960396 196960414 CAACACCCTAACATCAGGG 58 196960491 196960854 CATTATTTGGGTTGTACCACG 58 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 3 2 2 81 6 26356246 26357945 TGTTGCAGAGGTTCTCTGG 60 26356183 26356202 GACAGTGGTTGAGGAAAGTG 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228 1 1 2 80 6 26374423 26374442 TGACTTCCTGACTTCCATCC 59 26373705 26374381 GTGAGGTTATCATCCAGGGT 59 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000028763 2 1 2 199 1 222531360 222531378 CCGAACTAATTTCCCACGG 59 222528276 222531197 GTTCATTCAGGTTCCTGCG 59 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402 3 1 2 95 1 170397176 170403329 GGACACAGATTCCTTCTGGA 59 170397100 170397119 TAGTAGGTCCCTGAGGTGTC 60 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000084777 2 1 3 80 4 7208289 7208307 TTCCATTTCCAGCACTGAC 58 7205434 7208245 AAGGACTCCTCTGTCTCAG 58 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000071919 1 1 3 80 15 39738590 39738610 TTGAGAAAGCACAAGATGTCC 59 39732055 39738552 CAGGTGTATGATCTCCATTTGTG 60 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091 1 1 2 81 8 63414791 63414809 AAACGGAATGACTTGAGGC 59 63414853 63419552 TTCTTGGTTTCTGAAGGACG 58 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000091934 3 1 2 94 4 145239971 145239992 GTTCTCGACTATTTCTTTGAGG 57 145240536 145240962 AGGAAATCCTTCGGTTTGG 58 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 2 2 2 80 17 18415768 18417037 TTAGCATCACAACGTCCAC 58 18415706 18415724 GCAATGTGATGAAAGCAGG 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875 2 1 4 98 1 216565236 216565255 AAGCCATCTTTGTTCATCCC 59 216566192 216629194 TTGTGTCACCTTGTCTTCC 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 84 20 9749958 9817307 GGAAGAAAGGATACAAGACCCT 60 9817352 9817370 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863 2 1 2 81 1 188503154 188507608 AGCCTTTATCAAGCACCAG 58 188507650 188507671 GTGCATAGTCTTACAAATGTGC 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000019059 1 1 2 94 1 141875222 141875240 AGACTCTGGAGAAGGTGTG 58 141874716 141875164 CAGCTTCACATTGCTGAGG 59 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907 1 1 2 80 11 58809683 58827001 CCACCCTATTCAAGAAATTGG 57 58803424 58803442 ATGGATCCGTTGATTCCTC 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 3 1 4 82 6 52667519 52668875 GATGTGGAAGCACAGAAGC 59 52668920 52668939 GTGACAGCAGATTGGTTAGG 59 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 1 1 1 72 4 157058013 157058031 AGACTGTTGGAGCGAACTC 60 157058148 157058166 TTACCACAGTATGGACCGC 60 NA DesignNoJunction Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 2 2 2 80 9 47166984 47167005 AGATCGTCTGAAGTTTCTACCA 59 47167044 47168031 TTAATCGATTCAGGGCTTCTG 58 NA Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 1 2 2 80 8 48573558 48573577 TGAAACAGAGGTTACAAGGG 58 48573618 48574084 GGCTCATCTCTGCATATACAG 58 NA Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 3 2 2 81 8 48571691 48572556 AAAGAATTCAAGTCCTGGTGTG 59 48572598 48572616 TAAGTGGTCCTGAAGCAGC 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000014962 1 1 10 81 2 231409490 231547666 CATCCTGGTGACCAGTCTG 60 231409427 231409448 GATACTCCACAACTTTGTCCAG 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 3 2 2 83 18 33413701 33413720 CCAGACAAGTTACAGCATCG 59 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061 2 1 2 80 13 96231015 96231034 AGGACGAGGAAATAATCGTG 58 96226163 96230973 ACATTCACATGGACAGAACC 58 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531 2 1 2 80 2 187987051 187987069 AATCTCCTCTTGGACTGCT 58 187987977 187989048 CTGTTTACCACATTTGTTGAGG 58 NA Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 3 2 2 81 20 6784979 6785002 CTAAAGGAGAATTTGGACTCTTGG 60 6780508 6782976 TCCATGTTTGACAGAACAAGAC 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000079947 2 2 3 91 4 157239587 157239610 CATAGCAAGAACAAGAAGGAAGAG 60 157239312 157239538 AGGCTGATGTTCCTCTTGAG 60 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346 3 1 2 80 10 30983542 30983560 GGAGCGAGTTGTTACAAGC 59 30983602 30984446 CCATGCTCATCTACAAAGTGG 59 NA Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 1 2 2 80 17 39546324 39547345 CAATCTCTAGGAAGTGATCCGA 59 39547383 39547404 ATGATTTAGAGCATTGGTCCAG 59 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512 3 1 2 92 17 42926498 42926519 TCAGTTTGTCTCTGACAGCA 59 42926425 42926443 CAAGCACAGTTGGTTTGGA 59 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 2 2 2 80 5 138181524 138181818 CCAATATGTGGAGCAACTGTG 60 138181855 138181878 TAGGTGAAGATGAAGAAGAGTACC 60 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 2 2 2 80 8 21953347 21953366 GAAACCCAAGGAAGACTCTG 58 21952397 21953305 ACTCTGCGTTTCTTATCCTG 58 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995 2 1 2 81 1 83966352 83966370 TAGTACTGCAGGCAGATGC 60 83966414 83966750 AACACTATGCCATTTCCGTG 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 3 2 2 80 4 176586986 176587092 ATGAGCTTCAGGTGGTAGTG 60 176586925 176586946 AATGATGGATGACAAACCTCAC 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576 3 1 2 80 4 176596510 176597669 GTAAAGAAGATTTCCCATGGTC 57 176596451 176596469 GCAGAGGTCTGAACTTCTG 58 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000077814 2 1 2 81 18 37958013 37961814 AAGGGCAGATAGAGAAGCAG 59 37957951 37957969 AGCAGCTCATTCTGGTCTC 60 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000079598 2 1 2 95 11 47200237 47218319 AATCTCGCATACTTGGACCA 59 47218377 47218395 ATTCCGACTGAAGCCTGTC 60 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464 3 1 2 83 14 85343265 85343654 CTCCCACTGTAGAAGGGAC 59 85339582 85339600 TGCCATATCCTTGGACAGG 59 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000012948 2 1 3 180 15 45545051 45550201 TGTATGGATTCATCAACACCTG 59 45524572 45535929 ATGGACACATCCAGAACCT 58 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 3 2 2 80 1 192026238 192027055 TTCACTCCATTACAGGTCTCC 59 192027095 192027115 CTCTCAACGTCTTGTCTTCAG 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497 2 2 4 80 10 82050736 82050758 TTGAAGACTGCACTCTGAC 57 82047946 82047965 CTACTCCTTTGTCCAAGACC 58 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497 3 2 4 80 10 82050735 82050757 TGAAGACTGCACTCTGACC 59 82047945 82047965 ACTACTCCTTTGTCCAAGACC 60 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 2 2 2 80 6 49533872 49534140 GGTCATTGTGATTATGTGGGT 58 49534181 49534200 CTCTCCTTTCTCCTCTCCTG 59 NA Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 1 2 2 80 1 213975124 213975142 TCGGCTTCAGTCACTTGAG 60 213974970 213975081 TGTCTCCAGATCTTCCTTGC 60 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473 2 1 2 80 1 87976046 87976065 ATGGCAGATGATGAGTTCAC 58 87975948 87976006 TTGGAGATTAGCGTTGTTATGG 59 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667 1 1 2 90 9 65340326 65340345 TGGCAACAATGATAGAACGA 58 65340398 65340910 ATCCTATGCCCTAAGGTCC 58 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000087121 2 1 3 135 10 56716968 56716986 TAACTGGGTGGAGTTTGGT 59 56717083 56717180 GAAGAATTACTGCTCCTCCCT 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 3 2 3 81 10 56717027 56717045 CTGAGGCTGACCAGTACTG 60 56717088 56722806 TTTACAACGAATTCCTGCTCC 59 NA Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 1 1 1 79 1 197675988 197676006 CTGGGTAAAGGGACCTACG 59 197677059 197677077 TTCACAAATTTCAGGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 3 1 1 83 1 197675988 197676006 CTGGGTAAAGGGACCTACG 59 197677060 197677081 CTTATTCACAAATTTCAGGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239 2 1 2 83 6 21077694 21091616 GGAAGTTGGTTGAGCTCTG 59 21077313 21077332 CTTTGCACTGTTTGTGACAG 58 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 1 2 5 85 16 19728867 19728886 TGAGGAGCTGGATGTTAACG 60 19729169 19730709 GGTTATGCAAATCGCTCCG 60 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000046215 2 1 2 86 2 60564106 60564124 ATGCAGGAATTCAGAGCCT 59 60561392 60563570 CATCACTCAACTGCTTTGCT 59 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 3 2 2 80 17 42726722 42736585 TCTGAGGAGTTTGGGTATGC 60 42726661 42726680 AGTGAAATGGTGTGACAGGT 60 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000085681 2 1 2 80 10 81824276 81824295 TCTTGGAGAGGATCTTCCAC 59 81824337 81827372 GTTCTGGATTTCTGCCACAC 60 NA Rattus norvegicus 81 Hebp2 ENSRNOG00000053735 ENSRNOT00000079522 2 1 1 95 1 13718180 13718198 TGAGCAGCAACATGATCCA 60 13714992 13718121 AATCCATCGAAAGACCGCA 60 NA Rattus norvegicus 81 Rn60_X_0595.1 ENSRNOG00000051223 ENSRNOT00000076011 1 1 1 60 X 58824230 58824251 GTGTTCACCTACATCTCTTCTG 59 58824083 58824104 TGACGATAAGCTCAATGAAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Naa20 ENSRNOG00000010523 ENSRNOT00000014046 2 1 1 80 3 140111624 140114467 GATCCACTTACAGAAACTTATGGG 59 140114504 140114524 CTCGGCAACGATGAAATACTC 60 NA Rattus norvegicus 81 Stx5 ENSRNOG00000018847 ENSRNOT00000025664 1 1 1 80 1 224949045 224954932 GAAACAATTCAGAGGATTGACG 58 224954970 224954991 GTACTTGAGGATCTCTGAATGG 58 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519 3 1 2 90 9 61974724 61974743 GAGGATGTTGTCAATTGCCC 60 61972834 61974671 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 2 1 1 77 1 94760651 94760669 CCAGACACCAGTCTTCTGG 60 94759390 94759408 CAACAGACAGAGTGTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056 1 1 2 80 10 34957453 34957471 AACAGCAGTATGGCTCTGG 60 34956304 34957412 AATTTGTACTACCCTGACCTCC 60 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000089973 2 1 2 80 4 79895953 79895972 TATTAGTGGAAGCGTCACCC 60 79896012 79905279 TCCATATTGACGTAACTCTGCT 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417 3 1 2 114 12 13101945 13101965 TGCCAATGTTATGGTAGATGG 58 13102040 13109084 TAAGAACACGTCTGTTTGCG 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000076771 2 2 4 81 3 57646488 57646508 CCACCTTTACTCTACAAGGCT 60 57607683 57646445 TCCCAAACAGGACCTTTGG 60 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 2 2 2 80 2 94709553 94720819 GTTTACTGGTGGGAAATGAGTC 59 94709494 94709512 AGGAGTTCTCATTTGGCCT 59 NA Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 1 2 2 80 14 108906186 108911071 GGGTATTTGTAAAGATGAGCCC 59 108911112 108911130 TGCAAGAGAAACCATGCAC 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396 1 1 2 90 1 221260956 221260974 AGTAAGGGTGTGAGCAGTG 59 221260408 221260905 GTTTGAAACTATTGTCACAGGC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000051480 2 1 4 82 20 2058461 2058725 GCGATAAAGCGCACTATAGC 60 2058770 2058788 TCCCACACTCCATGTTGTC 60 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000079035 1 1 2 84 17 45446847 45446867 TTATGGCTTTGGCTCAGGA 59 45445270 45445288 TACTCATAGACGGTGCCAG 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000079342 1 1 2 80 1 201067283 201067303 CCAGGTCTATAAACGTTACCA 57 201041943 201067243 AGGAATCTTGTAAACTGGCTC 58 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000077573 2 1 3 88 3 72433315 72433333 CAAAGGTGAAAGGCTTCGG 60 72432618 72433265 GCGGTACTTCTCTTCATTCTG 59 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000055540 1 1 2 88 4 176918817 176922295 ATCCTGTTCATTGGATGGG 57 176918747 176918765 CATCTCAGGTTGTGTCCAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 2 2 2 80 13 47305655 47316450 CTCGGAGGGCTATCTTCTG 59 47305593 47305615 AGAGAATCACTCCAGTTAACTCC 60 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 2 2 4 80 1 82338653 82338673 GACTATCAGTGTGAGATCTCC 57 82332693 82338613 TGTTGGATCAGGTATTACGTC 58 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000072970 1 1 2 80 10 49008244 49008265 GACAATATCATCGCCATCAAGG 60 49006907 49008204 GTCCAGTACCACGTAGACAG 60 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597 3 1 2 97 14 79938510 79938528 TACACTATGACGACGTCCC 59 79933547 79935751 GTTCTTCAACTCTTCCACTGG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000087547 3 1 4 81 X 54231717 54231735 TCTGTAGTCTGCCTTTGGG 59 54229834 54231675 TATGGGATACCTGAGATGTACC 58 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 1 2 2 80 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410305 219410326 GATTCTAGAATGTTCCGCTCAG 59 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 1 2 2 80 8 48668967 48670197 TGGAATTCAAGAGTATTCGGG 58 48668907 48668926 GGATAATGGCACTGAACTCC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000078039 3 1 3 84 1 32092717 32093422 TCAGCCTAAAGCCAGAGTG 59 32089802 32089820 AGAACCACACCATTGAGCT 59 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 3 2 2 130 17 44793463 44793481 TCACCAAGTACACCAGCTC 59 44756636 44756657 TCAGTCTCCACTCAGATAAGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 2 2 2 84 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039664 195039683 TCCTACTATGGACACCTTGC 59 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000015948 3 1 2 80 1 142401821 142401839 AGGACTCGTTCCACTTGAG 59 142401311 142401779 TGTTGGTATCTTCTGTCAGGA 59 NA Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 1 2 2 81 4 157355825 157355957 ACACCACCAATAAGGTGCA 60 157355762 157355780 ACGAAGTTCCCTGATGGTG 60 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 3 2 2 84 4 182594142 182594161 GGTGAAAGAGTTAGATGCCT 57 182592588 182594098 TGCTATTAGAGAAACTGTTCCC 58 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000043971 1 1 2 115 19 25051389 25051407 AATAACCGAACCCAGTGTG 58 25051485 25058496 CACACGAAGATGTAAGGGAC 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017417 1 1 5 129 1 20899193 20916109 CTGAGGGAAAGATTGACGG 58 20897606 20897624 GAGATCCCACCTTTCACAG 58 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 2 2 2 80 14 6674564 6675267 TTCTGATGAACAGTATCCCGA 59 6674504 6674523 TTGATAGCCTCATCGGACTC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000071758 2 1 2 80 1 38583542 38583563 AACCCTACAAATGTGAAGAGTG 59 38583399 38583502 CTCCAGTGTGAATTCTCTGG 58 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210 3 1 2 107 12 6931958 6931981 CAGAGACACATATCGTTATTTGGG 60 6931398 6931893 CTTCAATTCCTGACACGGAC 59 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467 3 1 2 80 18 36846542 36846561 CTTTCCCACCAGTAATGGTG 59 36846604 36850628 GCATCATTGCTACACCTGG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 1 3 5 68 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762936 120762954 GTAGTCCGGTATCGTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000074644 2 1 2 96 2 231873942 231873961 ATGGAGACAGAGTCCAAAGC 60 231873199 231873218 TCACTCCAGTCACGAACTG 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000080537 2 1 2 80 15 46059098 46059119 CAGTTCGTGTTTGGTTAAAGAG 58 46059160 46072872 TGCATGAACATGGAGAAGG 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 2 2 5 81 1 80524477 80524496 CTATGGTGTGGACAAGAAGC 59 80524299 80524436 TTCAATTCCATGTGGATCAGAG 59 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 2 2 2 80 5 76678464 76679558 GCCCAGATAGCAATGAACC 59 76678402 76678421 AGCTTGATGTTTGGACAGTG 59 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000073148 1 1 3 80 10 42723395 42723414 AAAGTGGGAGGTAACTTGGA 59 42723457 42744116 TAGGTTTACGGGACCTCTC 58 NA Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 2 2 2 129 14 46022152 46024971 GTTGAAAGCCCTGTCACTC 59 46025064 46025082 GTTCAACAACACCTCCCAC 59 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 2 3 3 80 18 39476824 39476844 AGAAGTGTGAAGATGGAACAG 58 39476884 39478984 CATGATATTCTGGGTCTTTGC 57 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290 3 1 2 81 1 247133383 247133403 TGTGACAGTTGAGAATCATGC 59 247133446 247134246 AAATCTTGGAGCCTGTGGT 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 3 2 2 156 20 5804162 5805971 TTTATCAACCTGGAGGACGG 60 5803646 5803667 TGTAGTAGATCCCATAGAGGGT 59 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000038198 1 1 2 80 1 220783723 220783743 AGAGGAAAGTTTCTTGACTGC 59 220782907 220783682 GTAGTACTCACATGCCTGGT 59 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517 3 1 2 85 9 12641905 12641924 TCCTTATCCGAGTTCACCAG 59 12641966 12643927 GGTAGTTAACAGTTGTATAAGCCTG 60 NA Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 3 2 2 90 2 189995076 189995094 TACAAGATCTGCCAGTCGG 59 189995556 189995575 TATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674 1 1 2 83 13 48679957 48690255 GCCTGTCAGAAATAGGAAGGT 60 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776 3 1 2 167 10 104140906 104141689 CTGTCTAGCTCCTGTGGTC 59 104140757 104140775 TCCAGAAGCTGATCAAGGG 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 3 1 1 60 13 99101081 99101102 TGAAGAAACCTCATCGTTACAG 59 99099787 99099806 TGATAGCGTCTGATTTCTCG 58 NA DesignNoJunction Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 1 2 2 80 16 19767944 19768296 CTGACTACGAGCTTAAGTACC 58 19768338 19768356 CGTACTGGTCCTGAAACAC 58 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 1 2 2 85 4 113952880 113953039 ATGAACTCTGGTGGTTCTG 57 113952813 113952831 GAGTTTAGCTCTTCGGTGG 58 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000051028 3 1 2 119 5 99468333 99473964 AAATTACTTACGTGCCTGCA 58 99465729 99468253 GTTCTGGAATATCTCTGCCAG 58 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 2 3 3 135 4 150519571 150520280 TAGGAGCTGTGGTGATAAGC 59 150518941 150518959 GTCATAGCTTTCATGCCGG 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299 1 1 2 103 20 19318345 19346719 CCGTGATGGTAACAAATCAC 57 19346784 19346803 TCTTGAAGGAGTCACATGTG 58 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 2 2 2 80 8 97399102 97399121 ATCTCCCATATTATCCGCGA 58 97399162 97404690 GTACTGAGTTACCTTTGGCTG 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301 1 2 3 86 2 236621920 236621939 CATGTCAGCCGGAATAAGAG 59 236621988 236624585 TCCAGACAATCCTGTCAGC 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301 3 2 3 89 2 236621988 236624585 GCTGACAGGATTGTCTGGA 59 236624638 236624656 AAAGTGTAGCACGGAATGC 59 NA Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 1 1 1 63 6 107555755 107555775 GAGTACTTTGAAGAAGCTGTG 57 107556959 107556977 CAATTCCTGGACCCTTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 3 1 1 65 6 107555753 107555773 TGGAGTACTTTGAAGAAGCTG 58 107556959 107556977 CAATTCCTGGACCCTTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 1 2 2 80 15 52302687 52302708 GAGGAGGAAGATGATGACTCTG 60 52301692 52302650 GGAAGTAACCTTACTGAGTTCCT 60 NA Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 2 2 2 80 3 165520830 165522731 AGGCAACCTGAAGGTACAC 60 165520768 165520786 TTCTCTATGGCCAGCTTCC 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037 1 1 2 86 17 55290236 55292266 GCCTTCCAGAGTTAAAGTTAGAG 59 55290172 55290191 TGAGTTAGGGACTCTGAGGT 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171 1 1 2 80 10 29151022 29151040 GACCAGTACAACGTCACCA 60 29151082 29174566 GTCCTCAAACTTACTTGCCAG 59 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399 2 1 3 80 4 7123704 7123723 AAATGGAGATGCTGTCACAG 58 7123765 7126041 AAATCCACTTCTGTGGTCTC 58 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000082239 1 1 2 80 5 101563338 101563357 GCCAACATGAGAAAGAAGCT 59 101562293 101563298 GATTACATGTTGTTTGGTGCTC 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000089005 3 2 3 92 20 13971557 13971575 GTATCATCTTCGGAGGCCT 59 13971631 13971796 TCCACAAGTTCCTGTTGCT 60 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000081715 3 1 2 81 20 8304485 8304503 CAGTAAGATGGTGGAACGC 59 8304548 8304730 TTCCCTTCTTCCTCTTCGT 58 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 2 2 2 82 14 107792108 107794191 GGGATGATTCTTCTAGTTCTGC 59 107794234 107794252 TAGGTCAGGCTCTGAAAGC 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 2 2 2 80 8 71191713 71191732 CTGATAGCAACACCAAACCC 59 71191774 71192199 CATCAGGTCATAAGGGTCCC 60 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 3 2 2 81 8 71191713 71191732 CTGATAGCAACACCAAACCC 59 71191775 71192200 CCATCAGGTCATAAGGGTCC 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257 1 1 2 80 12 11712757 11712777 TTCCATCTTATGCTCTTCACC 58 11660998 11712717 TCTCCTTGCTAAACCTTTCTG 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450 3 1 2 87 15 52376449 52376468 CACCAACTTGAAGTACTGGG 59 52375427 52376402 ACTACTGTATCCAATGGAGAGG 59 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 3 2 2 84 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626073 CTAAGCTCTGAGACCGTCAG 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881 2 1 2 139 9 89064064 89064082 CTAGATGAGTCCCGGAACC 59 89059913 89063965 TCTACTAATTCACTCATGGACCG 60 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 3 2 3 91 1 197549472 197549490 CAAACCTTCTACCTCCTGC 58 197549110 197549418 ACATGAGACCTCTCATCGAG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 2 3 3 162 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606139 116606392 GAATGATCCTTCCTGCTGC 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000010419 1 1 2 80 6 25076758 25087255 ACCTTCATCAGGTACCTGC 59 25087297 25087317 TGCTATGAAGGAATCAGTGGT 59 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000087045 3 1 2 85 7 67341606 67341624 TCCAAAGTTTCCCATGCTG 58 67341537 67341559 GAATAAGAAGTCTCTTCGGCT 58 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233 3 1 2 90 8 65686783 65736423 GTGACCAGTTCGCTTTCAG 59 65736473 65736495 TAGAGGATACTTTCTCCACATCC 59 NA Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 1 1 1 60 18 40724701 40724719 CCAGACCAAGAAGTTGGGA 59 40723954 40723974 GTAGGACCAGTTTACCATCAC 58 NA DesignNoJunction Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000039652 1 1 4 82 2 8939052 8991006 TCAATAGTCTGCAGGGACTC 59 8938989 8939007 ATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 1 2 2 107 4 7109883 7110525 ATAGAACAACTGCAGGCTC 58 7109794 7109812 AGAGTGTGGAATGAATGGG 57 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428 1 1 2 83 15 51235210 51235228 ATGACCTGCTGGACATCAG 60 51235275 51245813 TTTGCTGGATCTCATCGGG 60 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 1 2 2 93 1 101379417 101379562 CTAGAGTGAACTATGACACAACAG 59 101375212 101375232 CGTTTACTGTAGACCATGTGG 59 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176 3 1 2 89 1 101368291 101368387 CCGATATGATGAGAGGCCG 60 101368220 101368238 TCTCGGCTTCTTTCTCTGC 60 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160 1 3 7 80 17 57033678 57050874 CCTACTCTAGCTCAGGTTTCTG 60 57050910 57050933 TGAAGGTAACTGTACTAGAGTCAC 60 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927 2 1 2 81 12 18119742 18139325 TGGACATGGGATTGGTGTC 60 18119679 18119697 CTCTGAACAGCATCCAGCT 60 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000045495 3 1 4 81 7 143124238 143124986 AGAAGGCAATTGATGTGGAC 59 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 1 2 2 80 4 84087867 84087885 GTGCGAAGGTTCAAGATCC 59 84087472 84087827 GTACCCTCCTATAATCGTTTCAG 58 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000023542 1 1 2 80 3 3330060 3336028 TCTTCCCTTTCTCAGGTCC 58 3336069 3336090 TTTGATGAAGAACAGCTTGAGG 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892 1 1 3 80 18 57654325 57727197 GCTAATGTGAGTTCCAACGA 58 57727239 57727258 CATCAGGATAACCATTGCGA 58 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000088570 2 1 2 81 X 84767704 84768420 GACTAGATAACTGGCTGAAACTG 59 84767079 84767099 TCAAGTATCTGTTCTTGCCAC 58 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 1 2 5 80 1 79685410 79685429 TCTACACCCTACGAACTCTG 58 79684584 79685367 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 3 3 3 89 4 125694246 125694264 CACACTGCTGACTAATGCG 59 125694034 125694193 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 2 4 5 87 2 30666640 30667390 ATCTAGCTCGGGAAGTCTG 58 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076434 3 1 5 176 2 30664877 30666571 TGTGGTAATGGTACACCAGG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000081971 1 1 3 80 5 117746628 117746893 GCCTGAAGAAAGTGAAATGGA 59 117746568 117746586 TTTCTGACCACAATTGCCC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491 1 1 2 80 20 19364564 19366031 CTTATCCCAACGATTCAGGAG 58 19364504 19364522 TGGGTCTGGTAAAGAAGGT 58 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 1 2 2 80 1 72644961 72644981 CTGACATTCTGTTGATTGCTC 58 72645022 72645122 GGTCTAATGGGATCATCCTG 57 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 3 4 6 80 14 44526461 44526480 TGGGTCTCTGGTTGAAATCC 60 44526523 44526855 GAACAAGCAACACCTGTCC 59 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 2 2 2 80 19 49996805 49997889 CCCTCAGCTCCATGAAGAG 60 49997930 49997951 CCTTCAGATCCTCATAGGTGTC 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000088297 3 1 2 81 19 44139464 44139804 GAAGTCATTTCTTATCAGCCAGG 60 44139405 44139423 GGAAGATGAGCAGGATGCT 60 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000005637 3 1 2 80 6 54549985 54550005 AGAAGCAGTCAGAGATAAGGC 60 54550045 54554514 TGCTGCATATAATCATCACCG 59 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 2 1 2 63 10 43633038 43633059 GATTTAGTCATGAAGTTGCCAC 58 43637231 43637250 TCGCCATGTTTATGAAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266 1 1 2 80 1 187854361 187854393 TTTACTCTTACCCAGCACCC 60 187853789 187853807 AGAGTACGACATCGATCGC 60 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000083264 2 1 3 80 7 107470601 107474194 ACTACAACAGCAACAAACCTC 59 107474233 107474254 ATGTTAAAGGTGCTCTTGACTC 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 3 2 2 80 4 181079315 181079337 GAAGATGTTCTACAGCTTTCAGG 60 181079375 181080129 AATGTCATCATGTCACCTCCA 60 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 78 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 1 3 4 107 5 78369877 78369895 AGAGTTTGCCATGTTGTGG 59 78368993 78369806 ATGATAATGTCAGCACCGG 58 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 2 2 4 81 5 78373222 78373701 CTTTGTCACGGATGTTCCTG 59 78372664 78372682 CTCTAGCTGGTTTACGCCA 60 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 3 2 2 80 1 199682749 199682768 TAATCCTGCTGACATTCTGG 57 199682809 199683356 TTGGTTCTGAACATAGACCAC 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891 1 1 2 80 3 163969831 163972318 CTGGGTGAGATGTTACCTG 57 163969769 163969787 CACCACTGTGTCGTAAGAG 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000082474 2 1 2 80 3 163970009 163972335 ATGACAAGCATGGAGATTTGG 59 163969777 163969795 TGTCGTAAGAGTGTGGGTC 59 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083568 1 1 2 151 10 36291413 36291432 GCTGTATTCAACCTCTGCAC 59 36291546 36293506 ACAGGTTACCGAACACTGG 60 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 1 2 2 80 18 58415752 58418515 ATTCACTGCAGATCTTACTTGG 59 58415693 58415712 GAAGATGATGGTGAGGACGA 59 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 2 2 2 80 7 24070386 24072229 CATATTCCTGTAGTTCAGCTCC 59 24070327 24070345 TGAATAGTTCTCCTCGCCA 58 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000043661 3 1 2 82 3 9434568 9447758 CATTTATGGAAGCCCTGCAG 59 9434505 9434523 CTTGGAGTTCCATCGAGCT 60 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000060810 1 1 2 141 6 28144215 28168874 GATGAAGCTGCTAAAGGCTC 59 28168978 28168996 TCCACTCAGTGAATCCTGC 59 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830 2 1 2 98 6 28144142 28144160 AAGATGAGCTGGAGCAGAG 59 28144221 28150832 GTTCTTCCTCCTTTAGCAGC 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 1 5 7 80 15 5509801 5509820 AGCTAGTTCAGAAGGAGAGG 58 5466200 5509760 GAATAAACCAAGACAGGAGGC 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000051009 2 1 2 100 2 233616235 233617122 AGTCGCAGAGAAAGATAAGGG 60 233617184 233617202 TAAAGTGAGTCCTCTGCCG 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232 3 1 2 102 2 233606680 233617124 GCAATTAGAGAAAGATAAGGGCC 60 233617185 233617204 AGTAAAGTGAGTCCTCTGCC 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000077726 1 1 2 82 18 58330805 58331390 TGCTGCCAAAGCTTATGAG 59 58333456 58333474 CTTTCTCGATCAGCTGCAC 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000072624 2 1 2 173 4 126617846 126619418 GCATATTGAAAGCAATGCACAC 60 126617694 126617712 GGAGAACATTCTCGGTCGT 60 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 1 2 2 80 1 252833128 252845843 TTGATAAAGGTCCCAAACCA 57 252833067 252833085 TGTCAATGTTTGTGACCCA 58 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000081787 1 1 3 80 3 8636129 8636229 TGCAGTACTATTTGGTTCCC 58 8636272 8636290 CTTCCTCCTCTTCATCGTC 57 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000013400 1 1 3 80 3 57832769 57840098 GTGGGATCTAGACGAGGAC 59 57840142 57840160 TGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000082196 1 1 2 97 15 4895579 4895597 ACTTCTACCACACGGACTG 59 4894712 4894731 GAGGTGAGACTGTTCAGGA 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000073502 2 3 5 81 1 257575426 257575444 GAGGAAAGCATTGCCAGTG 60 257575486 257694231 CTCTTCTTGTACTACGCATCAC 59 NA Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000057843 3 1 2 96 15 83708182 83708200 GGAGACGATCTGAAACACG 58 83708260 83710370 CACATCTTGTCTGGACCAG 58 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000014979 1 1 2 80 1 251203319 251203338 CGCTCAAAGGCTTTATGAGG 59 251203380 251213377 TGTTGATGACTCCATCGTCC 60 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000014979 3 1 2 80 1 251203318 251203337 CCGCTCAAAGGCTTTATGAG 59 251203379 251213376 GTTGATGACTCCATCGTCCA 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953 2 1 4 164 4 85588617 85588635 TGAGGTAGCAGAGATGCAG 59 85588763 85597868 ATTTGGAAAGCCGCAACTC 60 NA InUTR Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 2 2 2 111 6 1456481 1456499 CACCAGGTTTCTACGTGGA 59 1452779 1456409 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 3 2 2 112 6 1456482 1456500 ACACCAGGTTTCTACGTGG 60 1452779 1456409 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000037276 2 1 2 80 8 97568129 97568575 TGGTCTCAGTATTCCACGT 58 97568619 97568637 AACCTCATTGAAGAGCTCG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718 2 1 2 80 13 96356704 96379665 TTTCATTGCTGAGGTAGAGGA 59 96379706 96379725 AGTACTGTGGTCATCACTGG 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334 3 1 2 80 1 75617137 75617158 GGTATCTAAGGAGAATGTGCAG 59 75617199 75617872 AAGTTCCCATGTTTCCCAG 58 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000058195 3 1 3 165 6 106153123 106153142 GGTCCAACCTAGTAGATGCC 60 106159524 106162220 GAGGAGTCCTTACTGCTGC 60 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000085074 2 1 2 80 10 65673465 65675868 GGATGCCTCTGAAGGTCTG 60 65673397 65673415 GTTCTACAGCAATGGCCAC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 2 2 3 85 1 88586426 88587090 TCATCTCGGTGGGATTTCAC 60 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 1 2 2 80 13 48648525 48648544 ACAGGATCTGGATAGCAAGC 60 48648586 48649272 GACAGATCACTCTTGTTGGC 59 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 3 2 2 80 6 107640427 107640445 CACTCACCTTTGGTGACCT 60 107639253 107640386 TCTGAGAAGTCTTAACGTCCAC 60 NA Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 2 1 1 78 1 229938562 229938581 TGATGCTTGACAAGTTGCTG 60 229938625 229938643 ATCAGTCGAGACTCCTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644 2 1 3 99 7 143323593 143324329 AAGAACAAGTACGAGGATGAG 58 143323404 143323422 CCACCTTGTTCATGTAGGC 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857,ENSRNOT00000065893 2 3 3 100 12 52360966 52361846 GACATTCCAACACTTCAAACTC 58 52362006 52362024 TGTCCGGTATGGATCAGAC 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857 3 2 3 96 12 52362270 52364021 GAAGATGAAGATGCAGCTGG 59 52364080 52364098 GAACCCAGAGAACATGCCT 60 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000059162 3 1 3 80 18 60001401 60001421 TCTGACCGAGAAGGAAATGAC 60 59998224 60001359 AACGTCCCACCTCTTTAGG 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264 3 1 3 117 18 59998143 59998161 TTCCCGGGAGAAGAAAGAG 59 59996899 59997976 AATCTTTACACATGCTGGCT 58 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000079260 2 1 2 96 17 78497745 78499808 CTCACTATGTGCAAGACGG 58 78497667 78497686 TCTTCTATGTAGTCCGGCTC 58 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000051927 2 1 2 83 1 48327874 48327892 ACTTGTGCTGTTGCTACCT 60 48318475 48327831 TTCCTAGGTCTCTGCATATTCTC 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000084066 3 1 2 81 10 13556564 13557315 ACTGTCAAACAGAAGAGTGTC 58 13555996 13556014 TCTCTGAGCGGAAGTTCTC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 1 2 2 80 17 5429959 5432943 CTCTGTTACAAACTACTTTCCTCG 60 5429902 5429920 GGGCATCTTTCACCATGTC 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000065584 2 1 2 80 10 37051140 37051158 CAACAGCAGTATGGCTCTG 59 37049991 37051098 ATTTGTACTACCCTGACCTCC 59 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032,ENSRNOT00000082205 3 2 2 80 8 49697679 49697807 TCCTTTCTATTATGACTACCAGACC 60 49697841 49697863 AGAAGTATCCCAACAGAGAAGAG 59 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000016468 2 2 3 81 14 85965403 85967752 CAATTGCAGATTTGGAATGGAG 59 85965008 85965027 TCCTGAGCCTCATTTGTACC 60 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000016468 3 2 3 81 14 85965405 85967753 GCAATTGCAGATTTGGAATGG 59 85965009 85965028 CCTGAGCCTCATTTGTACCA 60 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171 1 1 3 140 15 11874675 11881757 TTGCTTGAAAGGAATGGGA 57 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 1 3 3 80 18 60695739 60699902 CTCTTAGATGGATTCTTCATTCGAC 60 60699938 60699958 CACAGACTCCATGTCATTCAG 59 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890 1 1 3 80 18 60496781 60496800 GGAGAATCCCGTATTCTCAG 57 60496848 60572950 CTTCACGTATGGGTCACTG 58 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 3 2 2 81 10 109616769 109618498 CAGAACCTGTACTTTAACTGCAG 60 109618539 109618557 CTTCCTGGAGGTTGATGCA 60 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 3 2 2 80 1 141578725 141578743 GGCCTCATTCAACATCACG 59 141578584 141578681 AGGGTCCTGGAATCTTTGG 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000078150 2 1 3 82 1 254553117 254558249 TTTGTGCTCATGACCAGAG 58 254553053 254553072 TTAATCCCTGCCTTCATTCC 58 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000067866 3 1 2 114 10 46614664 46614682 AAACTCCTTGGCTGAACAG 58 46613290 46613754 CCCATACATTTCCATTTCTGAG 57 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000005325 3 1 2 83 10 67478824 67478847 CTAACTTAATTTCCCTCGTAGGG 59 67478763 67478785 AGGTATTATGTAGGACTGGAGAC 59 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 1 3 3 80 4 23117460 23117480 ACCCTTGTGATTCCTATTCGT 59 23115920 23117422 GTCTTTATTAGTTAGGGCCTGAG 59 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 3 3 3 80 4 23118591 23118612 AAGGCATTTAACACCATCTCAG 59 23117928 23118552 ATTTCCACAGACAAACACCTG 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079524 3 1 3 100 7 104741537 104741555 GTTAACTGCACTCCGAGAC 58 104734580 104741474 TCTGAGAGTCACTGTTAGCC 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000012640 2 1 2 121 7 143222710 143222728 CTACAGGAAGCTGCTGGAG 60 143219706 143220769 TAGAAGTGACCACAGCTGAC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094 2 1 2 80 9 65921749 65921767 GTGTGAATGCTGTACTTGC 57 65920326 65921707 GAGCCAACTGAATATCCTGAG 58 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 1 3 3 80 16 20114286 20114305 TGGATGGTGAGACACATGAC 60 20114348 20114815 CCAGAAAGGACTCCATGCA 60 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000080517 2 1 2 105 X 122624670 122626317 CCGTTTGACTTCAGTAGATTCC 59 122626383 122626401 AAGAGCAATGGACGTTTCC 59 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 3 2 2 80 15 18664542 18675304 GAATCTATTATTGGTACTGGCGG 59 18664484 18664506 AGTAACAGAACTGATAGTCCTCG 60 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651 1 1 2 80 20 9421659 9423146 ATCTTCCTAACCATGAACCC 57 9423189 9423207 CGCAACTGTTCTAAACTGG 57 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240 3 2 4 85 4 15742476 15748961 AGATTACAGTTTGGCCTTGG 58 15742410 15742429 ATCTGGCCTGAGTTATTGTC 57 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 2 2 2 85 10 74099702 74099725 CCATATTTGGATCCACCTAATGAG 59 74097088 74099659 TGACCACTCCTGTCAATAGC 60 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000084317 3 1 2 81 1 48677746 48680131 TGAGTATCAAGCAGCTTGTG 58 48680173 48680193 AGCATGAACTGGTAATACTGC 59 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536 1 1 3 89 18 47606869 47606887 CTAGAAAGGAAAGGCGGTC 58 47606940 47630832 TATCATCGTTGGCTTGTCC 58 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205 1 1 2 167 5 173291665 173291755 GGAAGGATGTGAACATGGTG 59 173291953 173292136 TCCTGAACTCTTTATCCAGATCC 60 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 1 2 2 138 4 151513686 151513704 AGCACATGTCCTACATCGG 60 151508269 151513584 TCTCGGCTACCTATCTGCA 60 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071 3 1 2 98 3 44483855 44483873 GATGATGGCTCTCCCTTCC 60 44464951 44467077 GGCTCCTCATCTAAGGTACTG 60 NA Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 2 1 1 60 1 220417131 220417150 GGCAGTATGGTTTCAATCGA 58 220417415 220417434 AAATTAAACCCTGCCATGTG 57 NA DesignNoJunction Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435 1 1 2 88 7 27229245 27229654 CCCTCAAGGACAAGATCGA 59 27229175 27229193 AGACCATCCATACTGGCTG 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 3 2 2 80 3 2937957 2938577 TGTACCTGAACAGGTGACAG 59 2937896 2937914 GCATCTCCTTCCTCAACGA 60 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412 1 1 2 80 10 46155485 46155503 TCTGACCAACCAGAACCTG 59 46154186 46155443 TTCACTTTGTTCATCCACTCC 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 2 2 3 80 13 76501477 76528059 TGAAATTTGGCTCGAAGTGTG 60 76501417 76501435 TTCAAGCCATCAGATGCCA 60 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968 2 1 2 80 5 163212991 163214876 CAACGAAGACAGCCTTTCTG 60 163212930 163212949 ACTCACAGATTCGAGGAGAG 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 2 3 3 80 3 95724041 95724060 AGTCACATCCCTATCAGCAG 59 95724103 95724234 AAAGGAGGAGACAGGTGTG 59 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 3 2 2 80 6 80093494 80093515 CTAAAGTACCTGTTACTCAGGC 58 80092464 80093458 GTACTGGCTGTAAGAATCTATTGG 59 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 2 2 2 82 5 155660815 155660833 ACTGTTCCACACTGGACTC 59 155666587 155666605 GATGGCGTATACAAAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000087441 1 1 6 92 4 154706067 154706086 GGGTTTAACAGCATTCACCA 59 154706141 154706798 GACCTGAACAGTGGTTCTG 58 NA Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000063900 2 1 2 135 6 108141692 108141711 CACTCCTGCCTTATACACCA 59 108144271 108145814 ACTGTATTTCCTGGCAGCA 59 NA InUTR Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000076176 1 1 3 80 X 70331067 70331198 TCGACTTCCAAGATACAAGCA 60 70331240 70331258 GCTTGACCACTTTCCACAG 59 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 3 2 2 81 14 16378605 16378626 GGAGATGAGACAGATGTTTGTC 59 16377756 16378566 CTTCTCATGAAGCTCTTTCTCC 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000049297 1 1 3 94 3 2528967 2528985 ACATCATCCTGCTGGTCAG 60 2526084 2528909 CTTCTCTGCCTTGGACTCC 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 3 2 4 96 X 71971512 71972296 ACTGTGATACACAGGTCCA 58 71972356 71972374 TCTTCACTGGTGAATGGGA 58 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933 2 1 2 80 5 117590845 117591424 TCCATAAACAAAGGTGCAGAG 59 117591466 117591484 ACGAGTCCTCAGTACTAGC 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309 1 1 2 82 10 4553631 4553649 CACTGAAAGCAGTTCCTGG 59 4555663 4556067 TCCATTTGCAAACACTGGT 58 NA Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000073435 3 1 2 86 11 82871166 82871184 CAACATGGAATCAGCAGGC 60 82871232 82871654 TCTGAGTCACTTTCTGACGTC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395 3 1 4 82 20 3120560 3120578 TGCTCTTAACTGCTGAACC 58 3120621 3121527 TTGGAGGATAATCTCAGAACAG 57 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 2 2 2 80 6 110646940 110646959 TAGGTCTTGGGATGACAGTG 59 110646199 110646898 CCAACCTGTGATCACTTCTG 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 2 3 3 80 17 66580119 66580140 CACTTGTCTCCTTATTTCCTCC 59 66580178 66581983 GTAAAGATGGATGTGGAACCTG 59 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368 3 1 2 80 1 48530658 48531276 TTGGAGAAATCTTCGAGACCT 59 48530598 48530617 CTGAACATCTGACCCAAGGA 60 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957 1 1 2 92 5 172303393 172303505 TTAAGTACAGGGTGCTGGG 59 172303561 172303579 GATTCATAGGGTGCATGGG 58 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000064266 2 1 2 101 5 172303385 172303497 CAGTCCTCTTAATGCGCAG 59 172303562 172303580 CGATTCATAGGGTGCATGG 59 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 3 3 3 80 18 56394491 56394511 AGATCATGAGTCATCTCGGAC 59 56394553 56396611 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237 2 1 2 81 9 67702976 67702994 AGGTGGAACTCATGTACCC 59 67703038 67703502 CATGGTTCTGGATCGATGAC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000058007 3 1 4 96 8 70172090 70172108 GAAAGAGAAAGGCCGTGAC 59 70172168 70178259 CATTCCACAAGTGCCTGAG 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649 2 1 4 80 8 70183960 70184593 TATGAAGTTGAGCCCACAG 57 70184636 70184655 TAGGTCGTATGGATTCTGGA 57 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000089775 1 1 4 99 12 14613486 14613506 AGGTGTATGGGAGGAATGAC 59 14613406 14613424 ATAGTGTAGGTGGTGAGCG 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407 2 1 2 101 4 81249093 81249112 AGAGCCTGAAGAATTTGTGG 58 81249176 81255874 CTTGTCAGCTCTGTGAACC 59 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000085188 1 1 2 80 13 100302919 100306361 TCATTACACAGACCCAAATCC 58 100302859 100302877 CCTGTCATAGTCAAGCCCT 59 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 2 2 2 91 8 116096804 116096822 ATCACAGTGATTGGTCTGG 57 116101242 116101260 TACATAGGCATGAGCTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 1 2 2 80 15 109364871 109376866 GTCGAGCATTTAAAGAAACAGG 58 109364812 109364832 CTCCCAGAAAGATACTCAGCA 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373 2 1 2 84 6 111283582 111283600 CTCCCTCCAGGATAAGCTG 59 111283003 111283535 CAGGAAGATCAGAACTGCAG 58 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 1 2 2 80 6 53732365 53747046 AATGTGAGCGAATTCAAGGT 58 53732304 53732327 CATACAGTAGTGAGTGATGTTCAG 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 2 2 2 80 6 53732300 53732320 TCACTCACTACTGTATGGCAC 60 53728197 53732261 TTTCGAGAATCATCACCTAGGA 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 3 2 2 80 7 25972146 25980641 TCTCAAAGATCAGGTGTTACCA 59 25980681 25980700 ACCAGCTTATTTCTCACGGT 60 NA Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 2 2 2 80 13 99234195 99234213 ATCTACCTCTTCCTCACCG 58 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000077941 2 1 2 85 2 179591451 179591469 TGTGACACCATGAAAGTGG 58 179590536 179591403 ACCGCATTTCTTAATGAGGA 57 NA Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000037399 2 1 2 80 3 11407002 11407020 GTTCACCTCTAGCAGTGGT 59 11407064 11407888 GGCATGCTGTATGACTTGC 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000085599,ENSRNOT00000077790 1 3 4 80 2 57876738 57912875 CAGTCTTGTCACAGGAATGG 59 57876677 57876698 GTCATGTAATAGACCACAGCTC 59 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 2 2 2 80 5 50060057 50060976 GCTAAGGATTGTCCAGATGTG 59 50059997 50060020 GGAATTTCTATCTACACAGCAGTC 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 2 2 2 80 11 74765354 74769126 ACAGGAAGCTCAAGAAATCTC 58 74765294 74765315 TATTGTAGCTGGCATCATAGTC 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000091318 1 1 4 80 15 1038527 1040793 CAAACAGAATGCAACAAGGA 57 1047627 1047646 GGATAGGCATTATCCGTCTC 58 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 1 2 2 80 10 85993694 85993712 GAGCGTGATGAGCTAACAG 58 85993540 85993651 GGCTGTGAATACACTGTCAC 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000090375 3 1 3 85 1 215270226 215273061 CCAGAAAGACTATGCCAAAGG 59 215266467 215266486 CTTCTTCAAAGGTGGATGCG 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 1 2 2 80 6 115582512 115582533 CTATAACCTAGCACAGATGCAC 59 115581641 115582474 ACGTTCTTAAACAACTCCACTG 59 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 1 2 2 82 1 87167612 87167853 TGCTTGTCACAGCATACCT 59 87167548 87167566 ATGGAGGTCAGAAACACGG 60 NA Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000066546 3 1 2 81 15 18779498 18783411 TCACAGTCATGGTTACGGA 58 18779435 18779453 ATCACCAAGTCAAAGGGCT 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000066849 3 1 2 88 7 123280369 123280387 ACATCTGCAAGGCCTATGG 60 123280435 123280458 TTAGTCAGTCTTCTCCAAGTGTC 60 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119 1 1 2 80 11 82699143 82699426 TTCATCCGAGTGAGTCACC 59 82702454 82702472 TGGGTAAGCCACTATGTGC 60 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492 3 1 2 80 6 1549425 1549446 ACTTGCTTCAAGTGAAGATGAG 59 1548774 1549386 AAGTCTGATAGTCCTGTAGCC 59 NA Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000082139 1 1 2 80 15 27724807 27726397 GTCTTGCTACAGGATTCTTTGG 59 27724748 27724768 TACGACACTTCCGATAATTGC 59 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 3 2 2 80 16 6883885 6883903 AGGAAGAATTGCTGAGCTG 58 6883944 6888072 ATAAGCAAAGTAAGGACCTCTC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 2 3 10 89 7 117248581 117249304 TACTGCAGTCGGATATTCGG 60 117248511 117248529 TACCATCAGCCTTGTCCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000083429 3 1 10 95 7 117253869 117264769 AGCCACAGATGAACGAGAC 60 117253483 117253501 TACAGGTCACTGATGTGCC 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091285 3 1 10 90 7 117253867 117287886 GTACAAAGATGAACGAGACCG 59 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000086368 1 1 2 80 15 19811433 19811933 GAGAGTTGATAACAGCACGG 59 19811372 19811391 TGAATCTCATCTTGGCTTCG 58 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 1 2 2 80 1 73262721 73263409 CCTTCCTATGTCTTGTGATCTG 58 73252064 73252083 TTGCAGTGGATATGATGGGA 59 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734 1 1 2 80 20 29330323 29336581 TCGATGGAAAGGAATTCTGG 58 29347302 29347322 CAAGGGTATAGAAGATGCTGC 59 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 3 1 1 79 8 43480695 43480713 TTCCTCTTCAGGCCTTAGG 58 43480602 43480620 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000003851 1 1 3 90 13 78929669 78934099 CTTTCAAGAGGTAATGGAGAGTG 59 78929601 78929620 CCGAACATTGAGCTCATCAC 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 3 1 3 91 20 31288636 31288655 CAAGTGTGATCCTGATGCAG 59 31290498 31302822 GCTTACAACCGTCCATTGG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 3 2 2 81 2 248723399 248724221 ATTGGCAAGGGTACAGGAG 59 248724265 248724284 CAGAGCTGCTCATTGTTCTC 59 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000080686 2 1 2 108 5 171458880 171458899 TCATCAGCCTTCAGTGTCAG 60 171457333 171458810 GCTTTCCAATTGTTGAGCGA 60 NA Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 2 2 2 80 1 205663147 205669652 CGGAAGATGGTTCACTCAC 58 205663085 205663103 CAGTGGATTTCCTTCAGGG 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000091890 2 1 2 85 4 163401039 163402337 TCTCATCACCCAGAGATGAG 58 163400973 163400994 CTTTGTTTCTGATGCTCTTGAG 58 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 2 1 1 73 7 11322221 11322239 CAGACTCTGAGTACCCGAC 59 11323316 11323334 CGGTTCTAGGTCCTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 2 2 3 80 1 79066943 79077380 ATATCTCTACGTGTACAGCTCAC 60 79077418 79077438 GGTGGCACTGATTCAATACTG 59 NA Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 3 1 1 279 16 20555655 20555673 CCGGATACTCAGTCCAGAG 59 20557588 20557606 TCGTAAGTGCAGTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000039273 2 1 2 83 19 55210274 55221875 CATGAAAGGAAACTGCACGT 60 55221920 55221939 GTGATGAGGGAGTAGTTCCC 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135 3 1 2 100 5 145139848 145148307 TGATGCTCATGAATATGGACCT 60 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566 3 1 7 81 9 43751448 43761319 CTGCAGGAGCATAAATTGCA 59 43761363 43761381 TGACCTTCTGGCCTTTGAG 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054 1 2 7 81 9 43740209 43743120 CTAAACAGATGTTCCCTGTGG 59 43743163 43743181 TTGAGGTTGACTCCACGAG 59 NA Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000030056 3 1 2 136 7 34788950 34789227 TGTGTCAGTGTTTCAGGTC 58 34781301 34781319 CATCACCATCACCATCTCC 58 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 3 2 2 82 X 110689434 110692680 TGATTGAGCCATATCAGACCT 59 110692724 110692742 TGGACACAAAGCATTCCAC 59 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000086542 3 1 2 80 14 19418583 19418602 TGCTGCCAACTTTAACAGAC 59 19418644 19424563 GCTGGAGACTCATTTGATGC 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000078658 1 1 6 146 20 3301107 3305334 CTGGTGATCCCAAGTCAGG 60 3305441 3306021 CAGATTTGTCTTCCATCATCGG 60 NA InUTR Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 3 5 6 80 20 3305443 3306024 GATGATGGAAGACAAATCTGACC 60 3306061 3306082 GCACAATGGTCTTCATATCGAC 60 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155 2 1 2 93 3 112118677 112122234 GGATGTTGGTTGTAACAGGT 58 112117915 112117933 AAACTGGGAAACCACATGG 58 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 2 2 2 80 1 52379736 52380584 GGACATCGAGCTATTCCAC 58 52379674 52379693 GACCGATGGATCATGTAGAC 58 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000086226 1 1 7 88 5 166060106 166060125 GCTTCAGGAAATGGAGATCC 59 166053990 166060055 TATCAGAATCCGCGTCCAG 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000014470 2 1 4 115 2 149313115 149314183 ATGAAGATGGAGGAGCACG 60 149314259 149314280 GGAAACTCAGAACCAAAGTCAC 60 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000080478 3 1 2 81 18 76710806 76710920 TCCTCACGAAGAACACTGAG 60 76710240 76710260 CTGAGAAGTCTGGAGTCACAG 60 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830 1 1 2 83 10 84988061 84988080 GAAGACATCATGCCTGAGAG 58 84988126 84988299 AAAGTACCTCTTGTGCCAG 57 NA Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 3 2 2 80 6 126271365 126271384 CTGAGATGCTCCTCAATGTG 59 126271425 126276364 TCAGATAGTAGGAACCCTCTC 58 NA Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 2 2 2 80 8 13863842 13864916 CATATGAGCAAGCAGTTGCA 59 13864957 13864977 TCAAGCATTCCTTAAGGTGGT 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025291 2 1 10 81 9 95257456 95257475 CTGTCATGCCTAACATGGTC 59 95257516 95298738 ACATAGGCTTCAAATTCCTGAG 59 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827 3 1 2 83 4 118871042 118871244 ACAGAACAGCTAGGACTCAG 59 118874560 118874580 AGCTTCCTTTCTTGTCTTTGC 60 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000065187 3 1 2 84 1 199198888 199198909 TGAGGGTGTTATCAATTCAGAG 58 199198954 199199762 TCCTTTCACCTTGCTTGTC 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704 1 1 5 80 14 22213006 22213024 GCCAATCTCATTGCCTCAG 59 22214541 22214564 TCCTAATGTGCGTATCTTTCCT 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000036483 1 2 4 120 13 79740183 79744862 TTACTGGCAAAGAAGACCC 57 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049 1 1 3 95 9 81615401 81628372 TCTTCCGAATCGGGTACAG 59 81628431 81628449 CTTTGGGAAAGCGATTCCG 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 3 2 3 81 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085429 46089140 GAGCATCTCTAACCACCCA 59 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858 2 1 2 90 16 6659380 6659398 AGCTCTTTGAGTCCATCCG 60 6658844 6659326 CTCTCGAAGAGCTTCTCCA 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 1 2 2 80 3 13247870 13270129 CATCACAGTATCACAGGTATCC 58 13247811 13247829 TCCTCTTGAAATTTGCCGA 57 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000082793 3 1 8 80 6 64790204 64794464 TCCTCTTGATCTGGTACAGC 59 64794506 64794525 ACAATATTCTCCCGTGGGTC 60 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 2 2 2 101 5 58394292 58396482 AAAGTTTCGAAACAAGGAGCC 60 58396545 58396563 ATCTCATCTTCGTTGGCCC 60 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000079812 1 1 2 80 15 4395309 4396677 CACAAGTTCTCAGAGTGAATCTG 60 4395251 4395269 AAAGCAGAGTGCGAATTCC 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000079812 2 1 2 82 15 4392282 4395195 GGATATGGTGAACTTGACCA 57 4392219 4392238 TTCTGTTCATACAGGAGCTC 57 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 3 2 5 80 1 15835980 15840755 CCGTAGATCAGGATTTGCTG 59 15840797 15840816 GCATTCTTCCAATAACACGG 58 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 3 2 2 80 10 16710033 16710054 GTTAGTGAGCTTCCCTTAACAG 59 16707641 16709992 CTTCAGCCTACAAGCTCTG 58 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257 2 1 4 151 8 53841513 53841533 CAGATATTGACCTTGCAAAGG 57 53840170 53841400 TTCTACAGGACCCTTCTCG 58 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716 1 1 2 80 6 124583639 124598825 ACATGACAAGGGAATGAGCT 59 124583578 124583596 CATCCCAATCGCTTCTTGG 59 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000082967 3 1 2 193 X 71541181 71543882 GAACCAACGAAACGTATGCT 59 71544037 71544835 AAGTGAGCAGATCTGTCCAG 60 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 2 2 2 86 12 22105892 22105910 TAGCTCTTCTGCCTTTGGA 58 22105960 22106815 GTTAGCATCCGATTGGCTG 59 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000033806 2 1 2 83 14 20483488 20488299 GACAACGACGATTCTGACTG 59 20483424 20483442 GAAAGGTTGCTGTTCCGTG 60 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 2 3 3 81 12 39693763 39693781 CACCAAGGAGAGCTATGAC 57 39691573 39693720 ATTCAGACTCTCATCGAAGTC 57 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236 3 1 2 81 7 115038530 115044459 AAGATCTGCTTTCTCAGATGAC 58 115038470 115038488 ATAGCCCACAGCAATTCCT 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000022292 1 1 7 80 2 186154322 186154341 CTTTCCACTCCTAAGTCCAC 58 186146186 186154280 AGCAGAAATCTTCAGTCCTC 57 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000022292 3 1 7 80 2 186154321 186154339 TTCCACTCCTAAGTCCACC 58 186146184 186154279 TGAGCAGAAATCTTCAGTCCT 59 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000057266 2 1 2 81 12 41282912 41282930 GGAGGTGGAGTTTGATGTG 58 41284774 41284856 ATAGATTTCCGTGTTTGGGT 57 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664 2 2 3 80 13 47588867 47589260 CGGAAGAATGTAGACCGCA 60 47589304 47589322 CCAATCCCTGGAGTTCCTG 60 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000005853 2 1 3 108 13 47589317 47589340 GATGGAGGCAAACACATGG 59 47589572 47589590 TCTTGGATTCCTCTGGTCG 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317 3 1 3 81 8 111770111 111770133 CCTATCATGGCAGAATACTATGG 58 111768486 111770073 AATAATGGGTTTGAGGATCAGC 59 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000079452 3 1 2 95 9 92382390 92404982 TAGGAGGAAGGTCACATTTAGG 59 92382316 92382334 TAGATTGCACTTTGGGTGC 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923 1 1 2 80 7 142645205 142650188 ACACGCTAGTGAAGAGCTG 60 142650231 142650250 CAGATGAGGAAAGTGTTGGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 3 2 2 80 10 86880389 86881222 GGACATCCTGATTCTGCGA 60 86881266 86881284 TTCAGGGTCAGTCCATCTG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900 3 1 4 88 13 80429848 80429866 GGGAATGAGTTGTCCTCCC 60 80420091 80429797 AACACATATGCCCTTCACGA 60 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000077461 2 1 2 80 10 47529369 47529387 CAACAAAGGAAGGCTGCAG 60 47528448 47529328 AGAGCTTGGTATTTCTTGACGA 60 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748 2 1 3 81 3 154935191 154936959 CTGAGGGATTATGCTCTTAATACAG 59 154936998 154937016 AGTTGAGTCGCTGAGTGAC 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019 3 1 10 82 15 32614109 32800998 CATCTACTTCTGTGCTGCAC 59 32801038 32801061 GTTTAATAGTGAGTCTGGTTCCAG 59 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259 3 1 2 89 5 120459587 120461025 GTTGGCAAGATCAGAAATCAG 58 120461076 120461094 GTTCATCATCCGACTGCTC 58 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392 1 1 2 107 12 12762013 12762031 CCCTATGTTATGGCCAGTG 58 12754413 12761945 ATTTCTAGGCTTCAGATCTCTG 58 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 1 2 2 80 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958580 94958600 AGTCCCAGATATTGGTCAACC 60 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 2 2 4 80 1 200671085 200672157 GTGAATGTCACAGATGCCA 58 200671023 200671043 CCTGTTCTCACTGACAAAGTC 59 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000090393 2 1 2 121 5 118491160 118491179 TTCCCTAGTACCATGCTCCT 60 118487304 118489835 TCCATGATGCTTTGGGAGG 60 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000082712 1 1 2 80 16 32371760 32371779 ACCTGGCATCTCTATATGGA 57 32371276 32371718 CCAGATAAACCTCTTCCTCC 57 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 2 2 3 80 6 129652160 129652180 AGTAGGAGTCAAGAGAACGTC 59 129652219 129655940 TCACTTGTTTCATCCTCTTCTG 58 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 1 2 2 80 4 22536906 22536924 AGGGAGAAGGATTGGATGG 59 22536968 22553080 TGCTGTCAGAACTTTGCTC 58 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000072538 3 1 2 80 15 106284795 106286086 GATGATATCACAGCTACAGCA 58 106286128 106286146 CTGTGTAAGGTACTCGGGA 58 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000088679 2 2 5 80 9 81662728 81664256 AGGAAGCGTTCAACATCTG 58 81664298 81664318 CTGACACTGTGTTATTGTCCC 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293 3 1 2 93 X 118200470 118200488 AAACTGCACAATGCAACCA 59 118200544 118200569 AAAGAATAGCCAGGGACAGG 60 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000048306 1 1 3 85 11 84399463 84399481 GATACAGAAGCGTCAGGGA 59 84399532 84425169 TTCCAACTGTGCTGTTCTC 58 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316 1 1 3 80 11 84399463 84399481 GATACAGAAGCGTCAGGGA 59 84399524 84425167 CCAATGATCTTCCGGAACTG 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000086473 2 1 2 157 4 83714014 83746159 TCAGTGATGTCCATGAGGC 60 83746280 83751868 ATCTGCCTTTCCATAGGCA 59 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 3 2 2 80 15 4082978 4082996 GTGGAACTTGGCATTGACC 60 4083039 4083814 CATTGCCGTCCTGTTAAAGG 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000044591 1 1 3 80 11 80933954 80934585 TCCTGGGCAAGTTAGTCAC 59 80933892 80933913 GGTCCCATACAATTAGGATTCC 58 NA Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 3 2 2 80 10 109107492 109122261 AATGTCTACAAGACCATCATGG 58 109122300 109122320 TGCTTTCTCATAGTTCTTCCC 58 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814 3 1 2 81 1 264724775 264724796 AGTGTGATATTAGGGAAGATGC 58 264724836 264730056 TTTGCTGCTGTAACTTCTACC 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000080114 3 1 3 96 14 22124662 22124682 TTCACTGTAGCCCAGTATGAG 59 22124740 22124760 AGCAAACACTCCCGATCTC 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337 3 1 3 81 2 144917459 144922288 TTTCTGTAATAGCACTGGACC 58 144922329 144922349 CAATACATTCCTGGTTGTTGG 58 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 2 2 2 82 8 107633349 107633368 ATAGAAACCAGTGCCAAGGA 59 107632055 107633307 GGAACCTGTTGCCTAATTACTC 59 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 2 2 2 107 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362991 81363009 TTGAGTGAGACACAGAGGC 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000009114 3 1 3 101 10 86383149 86383644 AGAGGATTTGCAGGTCTCG 60 86383710 86383729 AGGAAATGACTGCAGTTGAC 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 3 3 3 81 2 208423970 208426476 AATTCATACCGAGCTCATGC 59 208426518 208426538 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867 1 1 5 80 11 81426443 81426462 GCTAACGTGTACATGAGACC 59 81424312 81426404 CCTAGAAATCATCATGTCTAGCG 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049 1 1 3 80 20 3319827 3319845 TTCTGGATGATGTCTGCAC 58 3319888 3320039 TGAAGGTCATGTAATTGCCC 58 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000001044 1 1 2 80 20 28057758 28057777 TAGTCCGAAATGAAGCAAGC 59 28057820 28057925 AATCCCACTGTCCTTCAGG 59 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 3 2 2 81 X 124895863 124895881 CCAGGTATTGAACCATGGC 59 124895923 124896427 TTTCTATGTGTTCATGGCATCG 60 NA Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 2 2 2 127 12 22729840 22729860 CAAGAGACTACCTCAGTTCGA 59 22732233 22732378 CACTCAGGTTCTGCTCCTC 60 NA Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 3 2 2 128 12 22732233 22732378 GAGGAGCAGAACCTGAGTG 60 22732468 22732488 ACAGCTTACACAGGTATACGG 60 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000017413 2 1 3 117 19 9774377 9777317 GGGAACATGACATTGAGACG 59 9774071 9774298 CACAGCTTGTGATTGAGACC 59 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 3 2 2 82 10 49191269 49191289 TGACTACGATTCGGAAGATGG 60 49188371 49191225 TGGTTTCCACGTCTGAGTC 60 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 3 2 2 80 8 55045944 55045965 GAACTAGAGAAGCAAATGGAGG 59 55044507 55045904 ACTTCTCATCCGACTTGAGC 60 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346 2 1 2 82 11 87422487 87424013 CTTCGGGTTCTGATTATTTCCA 59 87422426 87422444 GATTTGTTGCTCCGGACAG 59 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 2 2 2 80 13 53165291 53165313 TCTTCTAGTTCTGACTTCACCTC 59 53160492 53161470 TGAAGACCTTCTAATTCCTCCTG 60 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495 2 1 2 82 14 72121699 72121717 TTCATGGGAGAACCAAAGC 58 72018128 72121653 CATCTTGGGCTCTTTCCTG 58 NA InUTR Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344 2 1 2 128 2 116403735 116403753 ACCCTGACCTATCATGTCC 58 116401755 116403643 AAATGGTCGTTCTCCTGTG 58 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838 1 1 2 82 9 73947504 73958261 CGATCTGTCTGCTATTAAGATCG 59 73943508 73943526 CGGTTCTGTCGAAGAGGAG 60 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 2 2 2 99 7 129860683 129862039 CACTGACTTTGATGGCACC 59 129862102 129862120 CAGTACACCCAGAGACCAC 59 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195 1 1 2 124 5 159722308 159722326 TCCAAGCCGAACATCTCTG 60 159722829 159724027 CTGGATGACACCATAGCGT 60 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032 2 1 2 85 18 312841 318917 CAGATACCAGGGCTCTGAG 59 312774 312793 AATGGCCTTAATGGACTCCC 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 2 2 3 88 8 117769893 117769912 GAAATCCAGGACCACTACCC 60 117769963 117771862 TCTTCATAGGACTCGCCCT 60 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 1 2 2 80 6 135235771 135244151 TAATACGAGGGAGAAGACATCC 59 135235712 135235730 TATGGTCCAGCGATTTGCA 60 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421 2 1 2 80 6 23274250 23274270 GCTCAACTTATAGACCTGGG 58 23274189 23274209 GTATGAAGCATAATGCAAGGC 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 3 1 2 81 3 172433389 172433414 GTTATGAACGTGCCATTTGAC 59 172433564 172433586 CTGAGGTTCTATGACTAGATGGA 59 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 2 2 2 81 16 7040466 7043926 CGGATTATTGAAGGAAAGTTGC 58 7043965 7043986 TGCTCAACATGGTTCTTATCAG 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215 1 1 3 80 4 161731675 161731696 GTCCACTAATCTTCTGAAGCTG 59 161731227 161731634 CACAAACAATCCACACCCA 59 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 2 2 2 80 20 27415891 27415910 TGAGAAGATAGTGTTCACGG 57 27415952 27426212 CCACTTCTTCTAATCACCCA 57 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234 3 1 2 95 7 126134121 126134139 GAGACCTGCTTCAACATCC 58 126134198 126153853 CTTCTCTTGGCGAAAGGTG 59 NA Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612 2 1 2 80 9 98634046 98637853 AAGAATTCACTGGAAGGAAGG 58 98637895 98637913 TTCGTCATTTAGTCCCGAC 57 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077 3 1 2 90 7 98432471 98432489 AATGTTTGGGCTGAAGCTG 59 98432543 98434471 TTCATAAGGCCCTTGTGCA 60 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358 2 1 2 80 2 260527550 260527571 AGACTACACGAAATCGTAGAGG 60 260527607 260529297 GTAAGATCCAAACACAAGAGTCAG 60 NA Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504,ENSRNOT00000090695 2 2 2 64 7 144065651 144066009 TGTGGAATCCTAGTGCTGG 59 144066037 144066055 ATTGGAACCTCCTGGACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000080035 1 1 2 85 13 47962096 47979433 CTTCAAAGAATGTCTGTAAGGC 58 47962032 47962053 GTTATAGCTGTCAATCTTCTGC 57 NA Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 3 2 2 80 20 30708890 30708908 AAAGCATCCTAATGGCCTG 58 30707554 30708846 CAGGAGCCACAATTTCTGG 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000077402 2 1 3 139 X 142131466 142131485 AAATCCAATGCCTGCAAGTG 60 142129519 142131364 TTAAGCTGAGGCTCTGGTC 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 1 2 2 80 1 84157410 84157429 TGGCATCCTTCAAGATCCTG 60 84156921 84157369 CATAGGGACCAATGTCATTGC 60 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000029615 2 1 2 121 15 4155084 4155102 TGCTGCTCTATGCAGATCC 60 4155187 4160927 GTCAGTCAGGTGTCCTGAG 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950 2 1 2 80 6 134970729 134970751 CAGTTACAGTCTGGAGTTAATCG 59 134971071 134971091 AGTTCCTGATGCTGGATCTC 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 2 2 4 127 2 118563167 118565894 CGTACATGCAGAGTGTATGG 59 118565984 118566002 CAGGCAAGGGTACTGAGAG 60 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 2 2 3 80 20 35272849 35272869 GACATACATGTACATGTGGCG 60 35260886 35272807 CTTTCTAGGGCCTCTACGG 59 NA Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 1 2 2 101 19 44094838 44094861 CTCAGACATCACAAATATGGTAGG 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000016376 2 1 2 84 1 114317201 114317219 GAGAAGGACCCTAAGAGCG 59 114317265 114318685 TTCTCACCATGTAAAGCTGTG 59 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976 3 1 3 106 14 34485851 34485871 GTTAACCAGATTCAGAGTGGG 59 34485939 34486567 CTCTGTTGACTCTGCTGAG 58 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 3 2 3 80 9 95091554 95092575 ACTTCCTCTCAGCTGTTCC 59 95091492 95091515 TTCTTCTACTATGACTTCCAGCTC 60 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000078394 1 1 2 80 11 88092751 88093465 CCTGAAACTCAAGCCAGGA 60 88092689 88092709 AATAACCAAAGTCATCAGCGG 59 NA InUTR Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 2 3 3 88 13 113840134 113840153 TAGAAGGCAGTTCTCAGAGC 59 113833736 113840084 TAGACCACTGTTTGAGCGAG 60 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000086447 1 1 2 80 3 1547557 1547575 GATTCCTTGGGCTCTACCT 59 1547492 1547515 ATCCCATCTTTCTCTTGTGTC 58 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 3 1 2 133 4 161728196 161728214 AAGTCAGGTGGAACAGGTG 60 161728500 161728768 GGTCAATGCAGCACTTGAG 60 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182 2 2 3 166 15 35002231 35002421 GAGGAGATTGTTGGTGGTG 58 35002549 35003086 GTGACTGTGATTTCTCTTCCA 58 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000072263 1 3 4 80 5 127613021 127613573 TCACTATCAGCATTACAGCCA 59 127613615 127613633 CAATGACCATGGTGACGAG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000087673 2 1 3 80 18 62906604 62906623 AGAGATCCAACGAGTACCAG 59 62906666 62930781 GAGAAGTAAGGTATACCGAGAGG 59 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000015482 2 1 2 80 3 149160937 149160956 GATGTTCGAGAATGTTGTGG 57 149160998 149161832 ATCATCACTGGGTTACATGC 58 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939 3 1 2 90 4 10687781 10687799 AGGAAGAAATCCTCCAGCC 59 10687853 10687873 ACACAGTGTAAGGTTGGGA 59 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000017907 3 1 2 80 4 10693124 10694232 AATCTGAAGGCTTGATAACCTC 58 10696514 10696532 TGAAAGTGGGTGAACAAGC 59 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681 3 1 2 81 1 276306833 276306853 TATTGTAAAGTCTGCCAAGCG 59 276305410 276306794 GGTCCATCTTCATTACACATCTG 59 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000087680 2 1 2 82 1 276306833 276306852 ATTGTAAAGTCTGCCAAGCG 59 276305411 276306794 GTCCATCTTCATTACACATCTACTG 60 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 3 2 3 132 18 15468098 15480352 GCCAACACATACCTCTTTATGG 60 15480444 15494602 TGCCTTCGGGATAATCTGTC 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 2 2 5 80 6 80235408 80235431 CTTAGAGTCATCTTTAAAGGAGGC 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015420 1 1 3 80 5 127651592 127651610 CACAATCACCATGGCTGAC 59 127648922 127651549 TTACCTTGAAAGAAGGCCGA 59 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552 2 1 2 80 4 163225192 163225210 GCGGTAGCTTTAGGAATCC 58 163224125 163225151 ATTGAATCTCCGAAATGCTAGG 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000044147 1 1 2 80 4 181393630 181393649 GAAGTGAAGAGACTGCAGGA 60 181393689 181396189 TACTTCAATGTCTCGATCGAGG 60 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000027789 1 1 2 89 15 34501008 34501026 GAGCAGGAGAAATCCAGGG 60 34501077 34501854 GATCTCACTCACTTCCTCCAG 60 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 1 2 2 92 1 197999339 197999357 TTTCTGGACCCACAGAGAC 59 197999413 197999729 TGAAGGAATCCAGTGCTCC 59 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000082183 1 1 2 146 14 36071656 36118608 TACTCGGAACTCTGCAAAGG 60 36118717 36118735 TAAAGAGATGGTGGCAGCA 59 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 2 4 4 80 9 104698717 104718645 TCGGTCTTAATTCATGGTGCT 60 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000015426 2 1 2 99 4 9197712 9197731 AAGCCATTTCCATTGGACAG 59 9197792 9215583 CTAGGGAGGTAATCTGGGAG 58 NA Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 1 2 2 80 9 121712376 121712396 GGTCTACGGGATAATAATGCA 58 121710267 121712334 TCTTCTGGTCTGATCCCAG 58 NA Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 2 2 2 80 8 48475091 48475199 GCAAGTCTACAAGGCTCCA 60 48475240 48475261 TCCTTAAGCTCTTGTATGTCCA 59 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 1 2 2 80 9 116079152 116079171 ATTCTTCAGAGAACTGCCCA 59 116076293 116079110 TCAGGTCCTCTTTCCATCAG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 2 4 4 80 17 4270324 4270622 TACAACACGAACGAAGAAGGA 60 4270664 4270682 ATAGTCCTCGTTGTGCAGG 60 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000065280 1 1 2 82 5 128839377 128839396 CTAACGTGATGAAGGGATGG 58 128813620 128839335 GTCTTTGGACGTATAGTAGGAG 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924 2 1 5 84 9 97989318 98004382 GTTTGCTCAGGGTTCACAC 59 97989252 97989270 GAAGGCTAAAGACAGCCAC 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 3 3 5 81 9 97975855 97989220 ACAACAATCAGTCATGGAAGTC 59 97975795 97975813 GAAGTTAGCCTGTCCCAGG 60 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000087595 1 1 5 85 9 97928305 97928323 ATTCTGGTATGGAGGCTGC 60 97927816 97928257 GAAGCAAAGCAGGACTACAC 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 2 2 2 89 3 122942747 122943060 CTTCTCAATGCCAGGATGTG 59 122942677 122942695 TGTTGACCATGGGAGACAG 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 1 3 3 80 7 40306427 40308078 GACGGCTGTTTAATTAAGGTCC 60 40306368 40306388 TGGTTTGGAGTTCATGTAGGT 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 2 4 4 106 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831505 215831524 CACAGTATGTCTCCAGGAGG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404 1 1 3 140 15 109738207 109738225 AGAAAGATTGGGCAATGGC 59 109735775 109737532 TATTGGTTTGGGAGCCAGG 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100 1 1 2 92 10 49288915 49288933 AGTTGATGCCAGAGGTGAC 60 49288989 49289048 AAATCAGAGTCCCTCTGCC 59 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000051883 1 1 2 80 1 123959502 123959937 ATTCTCCTCTATAACAGTGGGTG 60 123959444 123959462 CTGTGCACATGCTTCTCTG 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 3 3 3 80 5 173479581 173480056 CACTCTGTTTGATGAAACCCA 59 173479521 173479540 CTCCTGATCAGAAAGATGCC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611 2 1 3 84 17 6169872 6169890 TGTGGTAGGATTCTGCCTG 59 6076040 6169826 CCATGAGACATCTTTCATGCC 60 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193 2 1 2 80 3 172722987 172723005 TTGCCTGAGAGCAGTAGAG 59 172723049 172724750 TGGATAGGGAAGCTCAGGT 60 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000002006 2 1 2 80 12 29057179 29070398 TCATCCCAAAGCCTGATGAG 60 29070441 29070459 TGAAGAGCTCCTTCACCTG 59 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000088674 3 1 2 80 14 44684664 44684686 CACTCAAGAACATATCGGACAG 59 44684726 44684745 CTCTTGTGCCAGTTTCTGAG 59 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000012112 3 1 2 83 5 129170523 129175593 CGTCACCTAATGGTTTCTTTAGTC 60 129170463 129170484 CCAAAGCAAAGAATCCAATTCC 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 3 2 3 84 6 132773942 132773961 CTGTGAAGTAGACGTGTCCT 59 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 2 2 2 80 10 15196650 15196744 CAGACAACTCGAAGTTCAGAG 59 15196783 15196804 TACTCAAGCGAACAACATTGTC 60 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 2 2 2 80 16 39909392 39912130 GATTCCAATGTGCTTCCCA 58 39914067 39914087 TGTACTTCCCTATCAGGAGTC 58 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000078885 1 3 4 82 8 117876425 117877822 GGTTAAAGAATATGCCATAGCG 58 117876364 117876383 CGTTCTTATCACTGACTCCC 58 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 2 2 2 92 3 118111421 118112963 CTGGATAACACTATTCATGGCC 59 118111350 118111369 TAGTGCAGTATATCGGGCAC 60 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770 1 1 2 82 4 6938816 6942261 GTGAACAGGATCCTAGTTGC 58 6942305 6942324 CCTTTATCCACAGTCCACAC 58 NA Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 3 2 2 80 11 81785802 81789549 GTTTGACAAAGGAGCAGAGG 59 81789589 81789610 GATGTCCTGTACTAACCAACCA 60 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000083674 3 1 4 80 17 34709852 34720926 CATTGAAATTGAGAACCCTGG 58 34720968 34720986 TGGTAGCTGAGGTTACCTG 58 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011 2 1 2 80 10 17493046 17495378 AAGAAGGAGGTGAAGCTGAC 60 17497926 17497944 ATGCTCAGTCTGTTCCTGG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000056172 2 1 3 88 2 200713564 200713661 CTACATCTCAGATGACACCC 57 200713495 200713513 AACTGGAATCAAGGTGGAG 57 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011 2 1 2 80 18 24874141 24874159 CCAATGCCATCAAACAAGG 58 24874202 24874534 TTTAAGAATACCAGGCCTGG 57 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646 3 1 2 123 17 10052648 10052666 GAAGCTGGCACATTACCAG 59 10039056 10040909 TCTGCTGCTCTTCTGATCG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571 2 1 2 82 5 134484618 134484636 AAGGGAGAGCATGGAAGAG 59 134477693 134477729 GTAAGACAAACCTGCCTGG 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954 1 1 3 80 6 99985696 99986387 AAGGAAATTCCGTGCACTG 59 99985634 99985652 TAGAGGCTGTTGTCTGAGG 58 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954 3 1 3 82 6 99985696 99986388 AAAGGAAATTCCGTGCACTG 60 99985633 99985652 GTAGAGGCTGTTGTCTGAGG 60 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910 1 2 3 81 X 70978681 70978699 ACTGAAGTCAGCCTCACTG 59 70977624 70978638 AAGAGGATGCTAGGTTCAGAG 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529 1 1 2 80 16 8760627 8766176 GCTCTTTAAGTATCAGCAGACAG 59 8766216 8766234 TCGTCTCCCAGAATTCCTC 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000057095 2 1 3 81 5 134492923 134492941 GCTACTCAAGGCTTTCCAG 58 134493025 134494145 CTGTAGTTCTTTGTCACCCA 58 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584 3 1 2 84 2 124205976 124340800 TAGACAAGATCATAGCAGTCTG 57 124340844 124340863 TGCCTCTTCATAATGCAGTC 58 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000078650 2 1 2 80 2 124205971 124277548 TAGAATAGACAAGGCTCTGATGAG 60 124277587 124277605 CTTCTTGTTGCTGCATCCG 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 3 3 3 102 6 136151627 136151646 TTCTGTGGTCTGTGAATCAG 58 136153881 136153899 CTGGTGGAATTCTACCGTG 58 NA DesignNoJunction Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221 1 1 3 80 17 9837938 9838169 GGTATTTGGGACACAGCAG 59 9838212 9838231 GACAATTGCAGCTTTAGCAC 58 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 1 2 2 88 1 98517550 98517664 GTGATCATCATGAAGACCCT 57 98517481 98517499 TAATCCAGGATTGTGCTGC 58 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922 2 1 2 80 1 98519254 98519695 GTGACAATGTATCAGTCCCA 57 98519193 98519211 AGAGGAGACGTAGAGACTG 57 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 1 2 2 80 11 89034700 89034719 TGAAGGAGACACCATTTCCA 59 89034552 89034659 CCATGTTCATTAGTCTGGAGG 58 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588 1 1 2 80 5 146672539 146682320 TGCCTTCACAGCTTATCCA 59 146682364 146682382 TCTTCGTTCTCTGTGACCA 58 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000057758 1 1 2 105 4 133125805 133126953 TTTCTGAGGTTAACACTTCCTG 58 133121694 133121712 GAGTTTCCTTGGGCAATCG 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 2 3 3 93 7 120659562 120659580 CAAGCGTCAGAAGTACGAG 58 120659005 120659507 GTAAGTTGAGAACTCAGAGGG 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 3 3 3 94 7 120659562 120659580 CAAGCGTCAGAAGTACGAG 58 120659004 120659506 GGTAAGTTGAGAACTCAGAGG 58 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083 2 1 2 198 5 90971974 90975848 CGACATAGAGTCAATTCAAACTCC 60 90976003 90998810 AGTTTCGGCTCACAATATCCT 60 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 1 2 2 80 5 150472366 150472384 CAGGATTTGGCTCTGAGGA 59 150472428 150473340 GGATCAACGCCATTCTCTG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000088006 1 1 3 80 12 37627142 37628490 TCCCTTCAGAGATGATAACAGC 60 37628529 37628549 AGGAGGTCTTTCTTCATCTGC 60 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 3 2 2 60 10 103409096 103409115 TTTCTATGGATGAACCAGCC 58 103411691 103411710 CCATTGTAGCCACTGTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000015935 2 1 2 81 6 136358087 136358105 ACGTGGTCAAGTACGAGAG 59 136358147 136362503 TTCATCTTTCTCATCCCATTCC 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000091216 1 1 5 80 10 56194524 56197197 TTACCAAGGCAACTTCATCC 58 56197243 56197262 AATTCCAAGGCCTCATTCAG 58 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 3 2 2 81 7 14239218 14239236 AAGGGCTTCTCATCCTCTG 59 14230525 14239174 GAGCCATCTCTGTTTCAGAG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000091209 3 1 3 104 19 62146839 62146858 GAGTTCACAGTGATGATGGA 57 62142133 62146774 CATCATCACCAACAGATACGT 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053 1 2 3 80 19 62104071 62104758 CAACTGGAGGAGATAAGTAAAGAC 59 62104014 62104033 TGTAATGCCCAATTTGACGA 58 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 2 2 2 82 7 12607670 12608824 CTACATCCAGCAGGTCTCG 60 12607606 12607624 GGAACACAGTCACGTACCA 60 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 1 2 2 80 2 12102692 12104240 TTAGCTCTGAGAGGTGAGC 59 12104281 12104302 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 2 2 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11073740 11075499 GTCAACTCCATGATGTACTCCT 60 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 1 2 2 80 5 134726697 134726715 CTTTGTAGGTCACTGTGGG 58 134726758 134727342 CTTTCGAACAGCTTGTTCTG 58 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 2 2 2 80 4 62280607 62281670 GGGACACCAAATAAGGAAACTG 60 62281711 62281729 GTCCGGCGATTTAGTTAGC 59 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000061858 2 1 2 80 4 9763857 9773121 GGAGGTCGTCCTAGTAAGC 59 9773165 9773183 TTGTAGAAGTGCCTGAGCC 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000090192 2 1 3 80 X 71193970 71194150 CTCCAGGCAAAGATACAGAG 58 71194189 71194211 CAAACCATAGGAAGAACTAGGAG 58 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000037097 1 1 2 80 5 152629970 152629989 GGACCCTTATGAAGGTCAGG 60 152630032 152633712 TAGTCCTCCTTCAGGTCGA 59 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 3 2 2 80 4 57940124 57940566 TCATAGCATGAATCGCTTGTG 59 57940608 57940626 TTCCTGTTGAGGTCCACAC 60 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 2 2 2 80 20 33221021 33221042 GAAGTACTTAGTAGACGAAGCA 58 33219824 33220983 TGAGTGTTGACTGATATTCCTG 58 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290 3 1 2 191 7 144309987 144310005 GTTATCAACCAGCCAGCAC 59 144309240 144309448 TCCACGGAAGATGAAGCTG 60 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000075728 2 2 3 89 2 235708725 235709243 AAAGGAGAACAGGGATTCCG 60 235709295 235709313 CAATTGGCAAGGAGCATCC 60 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 3 2 2 80 7 77159287 77159307 CCAGTGTCTGATACCTCAGAG 59 77159134 77159246 AGTCAAACAGAATGCTGGGA 60 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000 1 1 2 80 5 59016767 59020279 ATGACCTGGAAGAGACTTTGG 60 59016707 59016725 GTTCCAGAAGGGTCTGGTC 60 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 1 2 2 80 5 6040004 6040022 CCCTACGACTTTGACATCC 58 6038086 6039961 AACAATCTGTGGGACTATGG 57 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162 2 1 2 80 13 55540047 55547017 AAAGTGCAGATCCTTAGGTG 58 55539986 55540004 CCATGAGGTACTGAGGGAG 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000091292 1 1 3 105 1 214157219 214159066 ACCAGAAGACTACACTGTGC 60 214157133 214157153 CTTGGTATTGTTGGATCAGGG 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000071846 1 1 2 80 8 23372573 23372593 CTCTGTGTCAGATAAAGTGGC 59 23366859 23372531 ACTTCATGCACTGCTTCTG 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000071846 2 1 2 80 8 23372573 23372592 TCTGTGTCAGATAAAGTGGC 58 23366858 23372531 TACTTCATGCACTGCTTCTG 58 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 2 2 2 80 9 17821055 17821075 TCAAATTGTATGTCCGTCGTG 59 17821117 17821274 CACCACGGATGAAGTTGAG 59 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000091227 1 1 2 80 7 30104792 30104810 ATTAGCCTTCAACACAGCC 58 30095637 30104748 TGTTAGCACTCCTTTAGCC 57 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000091227 3 1 2 81 7 30104792 30104810 ATTAGCCTTCAACACAGCC 58 30095636 30104748 CTGTTAGCACTCCTTTAGCC 58 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000064755 2 1 4 83 5 58684244 58684262 CTCTATGGCATCGACAGCA 60 58684309 58686361 CTGGACCAGTGACATAGCC 60 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000006144 1 1 2 81 6 144118111 144123590 CCTGGGAAGAGAAGAACCA 59 144117051 144117069 GACTACCTGATTGTGCAGC 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845 1 1 2 81 6 144118111 144123336 TGCCGAAAGAGAAGAACCA 59 144117051 144117069 GACTACCTGATTGTGCAGC 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 3 1 2 80 7 53991135 53991155 AAGCAGTTGGATCCATAACTC 58 53991197 53992652 AGCACCTTCCATCTGACTC 59 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437 2 1 3 82 2 124145914 124145932 CTCTGTGGTTGGGAGAAGG 60 124141466 124145869 AACATCAAATACGGCACCTG 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054 1 1 3 93 16 49562101 49562120 AGAAACTCGCTTATGGTCCC 60 49553512 49562045 GTAGTTCACATCCTGCGGT 60 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653 2 1 2 151 2 127688923 127692081 GAACAGAATGAAGCCCAGG 59 127692196 127692214 TTGCTAGTCCAAAGTCAGC 58 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653 3 1 2 152 2 127688921 127692080 AAGAACAGAATGAAGCCCAG 58 127692195 127692213 TGCTAGTCCAAAGTCAGCA 59 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 3 3 3 80 12 37680956 37682695 CATTGTAGTCAAGTGCCACC 59 37680895 37680913 TCCACTTTCTCCTGGAGGA 60 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000080818 2 1 3 80 3 121832994 121833020 GAATACAGTTTGGACCATCTGTC 60 121831716 121831735 TGTGCAGTTCTCATGAAGTG 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 2 1 1 83 5 135396656 135396676 CAGAATGCTTCACTTCATCCA 59 135395741 135395759 CTGGCTCTGAGTCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 1 2 2 80 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692904 118692922 TCTGACTTTGTCCTCCCAG 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 2 2 2 80 1 133375598 133375622 CTCTTTCTGTACAACTTCCTTAGAC 59 133372426 133375563 CTCTATGTCTGTGCTATCCTGG 60 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 2 2 2 94 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914330 143914350 CCACAACTTCCATTAGTTCCT 58 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 3 2 2 80 11 10086040 10086058 AGAAGAGAAACGGGCTCAG 59 10089879 10091309 GATAAGTTACTGTTGGTGTGAAGG 60 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002478 2 1 3 80 11 88875238 88875538 CTGATGGCAAGTTAATTCAGGA 59 88877141 88877160 GACCACCATCTCCAATTCCA 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000080900 1 1 5 88 20 5416960 5417155 AAACACAGGTGGGAAAGGA 59 5417399 5417419 CACCTTTACAATCTGGGAGAG 58 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 1 2 2 80 4 99995019 99998708 GGGCCATGATAAGAATATCCC 58 99998750 99998768 GCCAGGCTAACTTCATCAC 59 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 3 2 2 82 4 99976012 99979933 ATCCTCAAGTGCATGTTGG 58 99979977 99979997 ATGTCACATTCTTCAGCAGTG 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 2 2 4 80 7 120534778 120536149 CAGCAAGCTGATTACCAGG 59 120534716 120534736 CCTTGTATGAATGGGAAGTGG 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 2 2 3 80 12 41202606 41205272 ATGTCCTAGGTCATGTTAGCC 59 41205313 41205332 CCAGGGAGATACATTCGGAG 60 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000071916 1 1 2 80 1 79983163 79983185 GACCTCAGCTCTTCCTTCC 60 79983232 79983251 GGGCTTGTTGAGATCAATGG 59 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 1 2 2 80 14 784387 784408 ATCAGAAACAAACAGCAGACTG 60 784447 785628 CCATATCTGCTGTCTCATTGG 59 NA Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402 3 1 2 105 10 49025010 49027503 TTCACAAGCTGGTTCATGG 58 49027798 49027817 TAACAAATCCCTGAGAGCGA 59 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139 2 1 2 94 2 148609967 148652037 GATGAAGACAGTGCATCTGG 59 148652722 148652741 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 1 2 2 60 7 60316402 60316420 CAGGCTATCGTGGAGTCAG 60 60319997 60320017 AAATTACTCTCATGCTGAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 2 2 2 80 13 73452299 73460603 TAACGACGTGAAAGACTGGA 59 73452238 73452256 CTGCAGACAGCACTATTGG 59 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 2 2 2 80 10 87225550 87225902 GAAACCAAAGCAAAGATTCCC 58 87225490 87225509 TTAGAATCTTGCTGCGTTGG 59 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 2 2 2 80 2 205648807 205652619 TCCCATTGAAGAGGTGCTG 60 205653518 205653536 GGCATGATCTCATCCTCGT 59 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000022382 1 1 2 96 1 277068812 277068830 GTGTTCTGCTGCTAATCGC 60 277080071 277093137 TTGGACTGGCATGGATCTG 60 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702 1 1 2 83 17 9326823 9326841 ATTTAGCCGGCTTTGAGGT 60 9326888 9332795 CCAGTGTGCTTCCTAGGTC 60 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 3 1 1 67 X 15325018 15325036 GACGAGACTCCTGATGTGG 60 15324563 15324581 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 1 2 2 80 X 156434860 156435189 CTTAGTTCAGATCCTAGCCCG 60 156435228 156435249 AGAAAGAGGACAGTATTCTGGG 59 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 1 3 5 80 4 164530392 164530412 GCATGAATGTAAACAGACCTG 58 164520728 164530352 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 2 1 2 101 10 88538701 88539127 AAGAAGGAGGTCACCATCG 59 88539192 88539210 CTTCTCTGATTTGGCCCAG 58 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201 3 1 2 109 4 65773732 65776149 AGGTAAACTTAGGGTTCACG 57 65773642 65773663 CTCGCTGAACTTCAAATATACG 58 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000079883 2 1 2 93 4 65776205 65776223 TCAGGCTTTGAAGAAGAGC 58 65775548 65776150 ACCTAAGTTGGTTTCTGTCTC 58 NA Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 1 2 2 80 9 25433014 25433032 TTTGAACAGACAGCACACG 59 25433073 25436013 TCTTTACAAAGTTGCTTGGTGG 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000046622 2 1 4 80 4 167351766 167351784 AGCTCAGCTCAGAGAAGAG 59 167352678 167353577 ATCTGAATCTGAGTCTGGGT 58 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 2 2 6 80 1 41928752 41928771 GACCTTAAACAGCAACTGCT 59 41928246 41928709 ATCCGCTCTTGCATATTGC 59 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 3 1 1 60 16 50358423 50358442 GTGTATCGCAACAAGAAGCT 59 50340704 50340722 CCACAGCTAAACTCACCAC 59 NA DesignNoJunction Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054 2 1 2 81 X 16144165 16172938 GGGAAATAGAAGGGAACAAGTC 59 16172979 16172998 ATTGGCTCCTCCAAGAAGTC 60 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552 2 1 2 80 8 117514689 117524674 AAACCTGGATCAGGAACAG 57 117524718 117524736 TCAATGACATGCTCGTCAG 58 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000025104 1 1 2 81 1 165647871 165649110 TGGAGGATCGAACCATCAG 59 165649154 165649173 CGGATGTAACTGGGAATGAG 58 NA Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000012880 1 1 2 92 X 15616120 15616623 TCTGGCAGATACTACACGG 59 15616679 15616697 AGAACTGGAAGACTGCTCC 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000091264 3 1 2 80 6 26543719 26543738 CTTACGTTGATCTGGTCACC 58 26543396 26543418 CGTCGTCATAAGAGTCCCA 59 NA Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 2 1 1 83 10 55998350 55998371 CAAGAATTCCTCAAGCCTTCTG 60 55998574 55998592 GATGTGGTGTCCTGGTACC 60 NA DesignNoJunction Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000040187 3 1 2 80 2 136994072 136994093 CCTTGTCTTCACTATCTCCTCC 60 136994134 136994166 GTAGGTGGGATGGGTAGGA 60 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000050073 3 2 5 80 11 27831376 27831395 TCTGTGTTTGTAGCCATTGG 59 27812911 27831336 TCTTGATGACTTTCCTTTCTGC 59 NA Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342 2 1 2 116 7 11947772 11947794 CTGTATACAAATGAGTACGTGGC 60 11947519 11947615 CTGAGGGACACCTTCTGTG 60 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685 2 1 4 80 12 38447622 38450300 AGAGTCAGCAGATTGATTTCCT 60 38450340 38450359 TCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 2 2 3 80 X 15756744 15756763 CTTCAGACAGCTTGTTTGCT 59 15756026 15756702 TGTTGTGGAAGAACTCTGGA 59 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 3 2 2 60 9 19452837 19452855 GACAATCGCACTGAACACG 60 19454529 19454550 CAGTGAATTGTCATAGCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 2 2 2 80 7 119705872 119706590 GCCAGCAGATCCTAAGGAG 60 119705810 119705828 AAGAAGCCAAAGAAGCAGC 59 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000011552 3 1 2 80 12 42490057 42490075 GGATGTCCAAAGTCGTCAC 59 42489109 42490014 GGAAGGCCAAAGTAAATCCG 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 1 1 1 68 2 140721884 140721902 ATCATATCGCTGTGGATGG 57 140726487 140726505 GTACAGGAGACCCAGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 2 1 2 80 16 81214624 81214643 ACTGGACCTGCTTAAGACAC 60 81213883 81214584 GTGGAAGTCACTTGTACATCTG 59 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 1 3 3 122 5 2051973 2054773 CACAATGGATGGAGAGGAG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 3 2 2 80 2 207375836 207375860 GAGATAATTTATAGACGGTCACAGC 60 207375896 207377930 TACATTGGTATCTCGCCTCAG 60 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000082008 1 1 3 80 3 14637210 14637980 GGTTTAACAATGGGACCCAC 59 14637149 14637169 CAATGCTGTCTCCATTTCTCC 59 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126 1 1 2 80 1 175006037 175007123 ACCTCCTTCCGAACTTTCTC 60 175005976 175005997 TAAATACTGCCTCCCAATTGTC 59 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 2 2 3 88 1 66237070 66237088 AAGCCTGAAGTCATCTCCC 59 66233735 66237018 CTCATCCACTCTGGACAGC 60 NA Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 1 2 2 80 19 16419493 16419511 AAAGAACGACGAGGACGAG 60 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707 2 1 2 81 1 128614254 128621061 TAGCTCCAAAGGACAATGC 58 128621106 128621124 GCAATGACTTCATCCAGGT 58 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 2 2 2 80 8 94326200 94326221 TATCAGTATCCACGACAAAGGG 60 94322634 94326160 GTCACCACAATAGCCTTGAC 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000067931 2 1 2 86 4 145707963 145715506 GGATCCAGACACAGATCCG 60 145707895 145707913 GGATGGAGGTTCGAGACTC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367 3 1 6 82 13 84474333 84474356 TCTGGATCTGAATGGGAAGG 59 84474399 84490606 CTTCAACCATGGCTGTTAACC 60 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 2 2 2 80 5 8989500 8990458 TGATTGGTCAGATGGATTGC 58 8989439 8989458 AAGACTCCTTGCAGTTAACC 58 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000061871 2 1 2 94 6 7965015 7965034 TCAGAGATCTCACCTACCAG 58 7965711 7966831 CATGTCCACAGATTCAGATAGG 58 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 2 4 5 81 4 176271125 176271143 GCTTCCTGCCTAAGTACCT 59 176270295 176271085 GGTAAGTTATAAACACCCATGAGG 59 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527 2 1 2 80 2 143674640 143680506 CCCATGACTGTCTATAGACCTG 60 143680544 143680565 TTCACCTTCTTTAATCAGCCTG 59 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000080581 2 1 3 80 3 129767291 129767309 AAAGATGCTGGCATCAGGA 59 129769856 129773585 CTGGCTCAATCCCTCTTCC 60 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000080581 3 1 3 81 3 129767290 129767309 TAAAGATGCTGGCATCAGGA 59 129769856 129773585 CTGGCTCAATCCCTCTTCC 60 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 3 3 3 113 4 149972332 149972350 CTACAGAAGGCATCTGTGG 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118 2 3 4 135 10 65309840 65310758 CAGGTGAAGATCATGACGGA 60 65308298 65309742 TCAGAGTCCCAAGGATGGA 60 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000011224 1 1 2 142 3 9936327 9936606 TGTTGCCCTACTGGATCAG 59 9927789 9936224 TCTTTGAAAGATTCCTGAGCTG 59 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000091389 1 1 2 138 13 80759741 80759759 ATCTTCCCAACCGTAGAGC 59 80755700 80756761 CTGGCTTTCCAAACAGGTC 59 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000034889 2 1 3 84 10 87347845 87348124 GAGGAGCTACATGGAATTACAG 59 87347102 87347121 GATTCGTCTGTGGAATCTGG 59 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000055829 1 1 2 80 1 134832432 134833702 TGGGAAAGAAAGGAGTTGAC 58 134832371 134832390 CTCCATTAGCTTCAACAGCA 58 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 1 1 1 60 7 1737908 1737926 CTGATAGGTGGAGGAGCTG 59 1737853 1737871 ATGTCAGCTTCTCCAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000085987 1 1 2 80 20 44592793 44592811 GGGTACTACATCACCACGA 59 44592854 44599157 GTTTCCATTCCAGGTACCTG 58 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000091084 3 1 3 134 12 37897741 37898574 GGACATCGGAGAAGTTGCT 60 37898672 37898690 GTTGACTCCCAGTAGCTGG 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000080507 3 1 3 81 6 10378447 10378468 CTGAATCCTGTTCAAGCCA 58 10378513 10378531 TTGCTCTTCTCGGATAGGG 59 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 3 2 2 141 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820692 99820710 TGGAGAAAGGCCAGTAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000066777 1 1 2 80 3 2036932 2036950 CTGCATTTCCCACTGAGGA 60 2030852 2036891 TAGATTCAGAACTCTTTGCAGC 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067189 2 1 6 82 5 150162763 150162781 AGGAGACACAGGAACATGC 60 150156365 150162717 GAATCCAGCCATGTCTCCA 60 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000013761 1 1 6 136 5 150125520 150125538 GAAGGTTGAAGAGAAGCGG 59 150121894 150122078 TTTCTGCAAGCTTCTGAGC 59 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 1 2 2 80 11 32690006 32697744 TCACATCATTAAGATTGTGGCC 59 32697784 32697803 TTCAAGTACCTCCAAATGCC 58 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 2 2 2 80 5 135445040 135445059 TACAGATGCCCAGACATTGG 60 135445099 135445456 GATGAACTGGACATCATTGGTG 60 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000042082 3 1 2 96 9 98406828 98418597 TTTACCTTATGAGGGTTACTACCAG 60 98419842 98419861 CAAGCATTTCACCTTGGGAG 60 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 2 2 2 92 10 56826113 56826218 CTCTGTCAGGCTTCCTAAGG 60 56826272 56826291 TGTAGATGAAGCTGCCAGAG 60 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 1 2 2 80 12 46989766 46989784 TTCTCAAAGGAGACGGCTC 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 2 3 3 100 10 109902825 109903324 AACTGAAAGTGGTCGGGAG 60 109903387 109903406 GATTTCTGCCTCTTTGAGCC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 3 2 3 82 2 27003791 27003810 TGATGAGGACAAGTGTTCAC 58 27003852 27006173 CTTCATATTCCTCCTGAAGGTC 58 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000039999 1 1 3 85 11 35696795 35697066 GAGATTAAAGAGGCCTTGTCAG 59 35696731 35696749 TCTGTCTTAGCCAGGTGTG 59 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000073296 3 1 2 119 10 55913340 55913358 CAGATGGAGTCAGAGCTGG 60 55913200 55913257 ACAACACTTGCTGTGATGG 59 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149 2 1 2 104 10 89478431 89478449 AAGAAGTTCTCCCAGTCCC 59 89479165 89479837 CATTGTGGTGCCTTGAGTG 60 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 3 2 2 107 3 147844224 147849280 CGTTGTGTTGGAAGGTCAC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000079795 2 1 3 100 14 6520017 6520037 TATGCCCAGTCCCTTACAC 59 6519935 6519953 TGACACATGTGGTCTCCAC 60 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 2 2 2 80 8 116296768 116297218 CTGGCTCCAGTCTATTCTCC 59 116296079 116296098 ACATCAGGAGTGCTTCAGTC 60 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558 2 1 2 94 19 24416310 24416328 CGGGCAGATTTGATTGAGC 60 24416386 24418159 AGATGTTCAGCCACATTGC 59 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 1 2 2 80 13 84098996 84099014 TACCCTCACAGTCAACCCT 60 84087759 84098952 GTGGAGTCTGTAGTGCCTG 60 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000091418 2 1 2 84 2 27311219 27311237 ATATTTGCCGTTGCCAAGG 59 27308964 27311172 GAACACCTAAATGAGAGCCC 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000077908 3 1 4 83 1 201155668 201164782 CTCCACAGAGGACTTCTTCAG 60 201164827 201164845 AGTCTCCTTGCTTCTGTGG 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295 2 1 2 80 8 116758076 116758433 CAACGACTACCAACAGTGC 59 116758475 116758495 ATCAAATTGCAAGGGATGTGG 60 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000084429 2 1 2 80 8 116758349 116758441 ATCTGATAAAGTGCTTGAGGAC 58 116758481 116758500 TTGGGATCAAATTGCAAGGG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 2 3 3 80 8 78379221 78385825 CTTGGCATCTATTTATTCTCCTGAC 60 78379165 78379184 GGTGAAGGAGATCCTACTGG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000074889 2 1 3 80 14 5938303 5941746 AAATTGATCCCAGGACTGGG 60 5941788 5941807 ATCATCCAGACAAGGTACCG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877 1 1 3 81 14 5928847 5928865 AGTCGTGGCTATTGTTGGA 59 5928909 5928932 CATGCCACTGTGATTCTGTC 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 1 2 5 111 1 215672161 215673426 AGGAGGAAGAGGAAGTCCA 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000090426 1 1 2 80 3 57883707 57883725 CAGTTTGGTGTCACTCTGG 58 57883643 57883664 AGTAGCTGTACTTACGCCTC 59 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316 1 1 2 80 10 93602135 93602153 CTGTATGAGCAGAGGTTCG 58 93594813 93602094 TGGGTAATTTCTTGACATCCTC 58 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 2 2 4 82 3 152600424 152600442 AGGAAAGATGCACAGACCC 60 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000077275 2 1 2 81 19 22603082 22603101 CTGGAAGAAACTGGCATCTG 59 22601137 22603043 GAATTGTCATTCTGAAGTGGTAGG 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000077275 3 1 2 81 19 22603078 22603098 GAAGAAACTGGCATCTGTGTC 60 22601134 22603039 GGAGAATTGTCATTCTGAAGTGG 60 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000080168 3 1 2 80 2 149004851 149004870 AGGAAGGAAGATCTGAGGGA 59 148997476 149004809 ATTGTGCTTTAGTCCACTGC 59 NA Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 2 2 2 80 7 123381301 123401450 ACATCGACGAGATGCTACAG 60 123401491 123401511 AGGAGCTACATAGTTGCTCTG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000024763 ENSRNOT00000034026 1 1 1 60 X 21313762 21313781 GCTTTCAATGTGATCAACGG 58 21313719 21313737 TCATGAACTCTTGCATGGC 59 NA DesignNoJunction Rattus norvegicus 81 Eif5b ENSRNOG00000023356 ENSRNOT00000035785 2 1 1 80 9 44699921 44700155 AATTCTAGATAAGCTCCGCCA 59 44700196 44700215 ACATTTGTGGCACCAATCTG 60 NA Rattus norvegicus 81 Eif5b ENSRNOG00000023356 ENSRNOT00000035785 3 1 1 80 9 44698755 44698775 TCCGAGTATGACTCTGATGAC 59 44698816 44699834 TCGTCGTTTCTCAATTCTCC 58 NA Rattus norvegicus 81 Sdad1 ENSRNOG00000022229 ENSRNOT00000030222 3 1 1 80 14 17266024 17266644 TGACCGTAGGAATCAATGCT 59 17266687 17266705 CCAGGTCCTGAAGAAGCTC 60 NA Rattus norvegicus 81 Mospd1 ENSRNOG00000002332 ENSRNOT00000003192 2 1 1 85 X 157759933 157761597 GTGGATATTGTCATTCGTCATAGAG 60 157761639 157761658 CTTTGTTCCGAAACCTGGAG 59 NA Rattus norvegicus 81 Lbp ENSRNOG00000014532 ENSRNOT00000019787 2 1 1 80 3 154805458 154805479 GAGATTGAAGGCTTTGTGATCC 60 154805518 154806769 GACGAATACATTCGTGACCAC 60 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560 1 1 2 84 7 14363852 14369735 GAGCTACACAGGCTTTGTC 59 14363786 14363804 ATAATCACAGGTGGGCTGG 60 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560 2 1 2 85 7 14363852 14369735 GAGCTACACAGGCTTTGTC 59 14363785 14363803 CATAATCACAGGTGGGCTG 58 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631 1 1 2 80 5 156549240 156549261 CCATTACTTCCTGTTGGTAGAG 58 156549299 156554621 GAAGTCCAACTTCATTTGTCTG 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000083915 1 1 5 91 9 28732771 28732789 ATGGATGTGGCCATCTCTG 60 28667071 28732719 ATACCTTTCATTGTTCGATCGC 60 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 2 2 2 80 1 37769417 37769436 TGGTTGCTCCATTTCTTCAG 59 37769477 37770331 AGATAAGTATCTCAGGAGCCA 58 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 3 2 2 80 12 48346501 48346522 TCTTACTGTTCATTGCAAGAGC 59 48346563 48347853 CCGTTGGATACACCTCAGG 60 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000020955 3 1 2 98 9 42920761 42920779 GAAGTCCAGTCAGATCGGG 60 42918036 42920700 GATGAAATGGGAACTTGGGC 60 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631 1 1 2 80 1 211559602 211559621 GATGACACTCACAAGATGGC 59 211559664 211560199 GTTGTCAGCAGAGCTTCTC 59 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000023610 3 1 2 82 1 211559659 211561671 CAGCAGAGAAGAGACAAGAG 58 211561714 211561734 AATTTACTGAACTCCCTCCTG 57 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000081570 1 1 3 151 14 81014710 81023368 TTTCATTGACCAGCAGTCTG 59 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287 2 1 2 83 2 247248625 247281849 AACCTCCGGTCTCATTGTG 60 247281896 247281914 CAGTAATCTTCAGGCCCGA 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 3 3 3 120 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050905 5051059 CGGACTCCATCAACCTCAG 60 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000078931 3 1 3 105 10 89182641 89183342 TCCCACTGTTATGTACTCGG 59 89183410 89183428 TAGAAGCGGACGATGTTGG 60 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 2 2 2 80 7 2558242 2558477 AAGGAACGGAGATATGGGTG 59 2558181 2558200 TAAGGAGCTGTGTAGAACCC 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979 2 1 3 80 20 5162791 5162915 TCAACAAGCACTTCCTCGA 59 5162729 5162747 CCTCACTCTTGAAGGCCTC 60 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001135 3 1 3 100 20 5162965 5163140 CAAGGATTTGCAGGGAGGA 60 5162777 5162796 TGTACTTGGGATCATCGAGG 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001138 3 1 3 100 20 5162965 5163745 CCTGAGGAAATTTCAAGAGGA 58 5162779 5162797 TACTTGGGATCATCGAGGA 57 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 1 2 2 141 9 45546504 45556979 GGAAGGATCATCGGATGGA 59 45538299 45546399 CACTATACCCATCCGGGTC 59 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000087579 3 1 2 112 3 167989578 167995640 AATTCTTTAGGCACAAGGACG 59 167989486 167989504 CTTGGAACTCTTGGCTGTC 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000089624 2 1 5 80 8 99715881 99716790 ACTTCTAGAAGTCTTAACAGGC 58 99716831 99716849 GCAACATAAACCATCTGCC 57 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000082273 3 1 2 86 2 180012620 180046271 ATTACAAGGAGTGCAAGATCC 58 180046319 180046337 GTATGAGGAAACTTCGGGC 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 3 2 2 80 8 109243299 109243321 CTCAAGAACTGTTGAAAGACTGG 60 109243361 109250473 CAGACATGGCTTCCTCTCC 60 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 2 3 3 83 8 87270535 87270553 GTGCTAGCAAAGTGACCAG 59 87268998 87270489 CTTGTCCTGACACTGATTGG 59 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142 2 1 2 163 8 128790554 128794275 GACGCTCATGTTACATCCAG 59 128795218 128795236 AGAACACAGACAGCATCCC 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 1 2 2 80 10 89237654 89237674 TCCACTCAGACATGAATCTCC 59 89237716 89239682 TGTAAGTGGGACCATCCAG 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000087432 3 1 3 81 1 219833665 219836233 TGGTACAAGGTACATAGAGGAG 59 219836275 219836293 ACAGGTGAGATCATGCCAG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000038549 2 1 7 125 16 63924128 64025118 TTGTTGAGTCAAACGCCAC 59 64025207 64025225 GGTTTGACAGGTCCTTCAC 58 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 1 2 2 80 8 119508821 119508840 TGATGTCAGAACACTACCCA 58 119507091 119508780 ATCAGTTCTCGACTAACAGCA 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000066892 2 1 2 85 12 51313075 51313644 CTACTGCAGAACAATTGTAACG 58 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 1 2 3 80 2 210782027 210782045 TCCCGACTATGACAGAAGC 59 210724969 210781986 TCAATTAAGTAGGGCAGATTGG 58 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000084311 1 1 2 127 10 89699276 89699484 TCTGCAGCCAGAAATCTCC 60 89698961 89698981 GTGACTGAGATCCTGGAAGAG 60 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431 3 1 2 80 X 23573846 23649181 TCTGGTCATCACCAAGATCG 60 23573785 23573804 ATGGCCACTATCTCATCTCC 59 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119 2 1 2 80 10 78134212 78153770 CGACTGTTACAAGGTGGGA 59 78134150 78134170 AAATGTTTCCTGGATGACCAC 59 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822 2 1 2 81 8 132120519 132135488 CTCCAGGAACATGCTTGTC 59 132135532 132135551 TTGGTACTCAATCGTGTGGT 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654 2 1 3 91 7 66740019 66743113 GGCACAGAGATATAGACCCT 58 66743167 66743185 ATATGCGTCTTTCGCACAG 59 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143 1 1 2 87 5 157347612 157347630 CAGAGTGGAGACCAGTGAG 59 157346797 157347561 CTTGTTTGTGACCTTCGGG 59 NA Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 2 2 2 80 14 89199470 89199491 CATCGACATAAGGAAACTCCTC 59 89197875 89199432 TTATTGACGATATTGCACACCG 60 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000089557 2 1 2 83 8 61794657 61799784 TTCTCCCAAGGAATTTGCG 59 61799831 61799849 TGCTGTTTCCTTCTTTCCC 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 2 3 5 85 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4418998 4419018 GGCAATGAAGAGAAGGAAGAC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000043518 2 1 4 100 8 39209356 39209375 TTCGAAATGCTGAGATTGGT 58 39207910 39209298 GTCCTTTACCTTGTATATCCTGAC 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 2 3 3 80 9 50708349 50708368 TCGGCACATAAACATACGTG 59 50708407 50709075 GCTATATCATACCCACATACCTC 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 2 2 4 80 14 84287259 84287354 CTGACCAAGATCAACTACGG 58 84287397 84287415 ATTGTGCTCATACTGTGGC 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 1 2 4 118 14 84308102 84308362 GAGCTCGGAACTTTGACCT 60 84308573 84309820 CTTCTGGATCACCTCTGGG 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000079516 1 1 6 80 5 158109539 158109558 ATCAACGACAAGTCTACTGG 57 158109601 158114209 CTGGTTGTCATTGGTTCCT 58 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000084085 2 1 2 81 5 154313241 154313262 GTATGGGAACCCAGTACCTG 60 154313307 154313325 GAAGAACTTGGACTTGCCG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 3 3 8 89 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364299 4364317 ATCAGAGGTTTCCCATCCA 58 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 3 2 2 80 3 153235245 153245845 GAAAGTCTGGGAGTAAGTTCC 58 153235185 153235205 ATCAATCCGAGACTGATTCAG 58 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000060673 3 1 2 82 2 45230079 45230103 GAGGATTTCCGGATTACTATTTCAC 60 45230140 45240919 TATGAGAAGGCTGTATTTGCAC 59 NA InUTR Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000014248 1 1 3 90 16 54184312 54184330 AATGAAGTTCAGCACACGG 59 54184384 54187892 GACACCTGTTAACCACCAG 58 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 2 2 2 80 1 73730894 73730912 GCAACAGTACTACCAGTGG 58 73729828 73730850 CTCTGGTACATGCTCATGG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 1 7 8 98 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 2 2 2 80 5 78155353 78155374 CACAACACTGAAATTCGAATGG 59 78154293 78155315 CTGTAACTCTTCGACCTTAGTC 58 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001 1 1 2 200 2 218966221 218966351 GAAGACAAGATGCTCACTGC 59 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000088462 2 1 2 81 16 71653842 71656301 GCGTTTAATAACGACCTCTG 57 71657643 71657664 CTGAGTTTCGTATTTCTTCACC 58 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 3 2 2 82 8 21453156 21453176 ATTTAAACCCAGCCTGATCTC 58 21452367 21453115 TTTCCCATTCTTGGAGAATTCC 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 1 2 2 80 8 130768289 130768307 CAAGCTGTGGATCTCTTGC 59 130768350 130792986 TCCATATGTCTACTGCAGGG 59 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000047571 1 1 2 80 3 82926007 82926026 CCTCTGCAGAGACATTTGTG 59 82925944 82925965 GATGGCGTGGATCATATCCA 60 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997 2 1 2 80 2 34396477 34402948 GTGGAGTTTCAGATCTCACAG 59 34402989 34403008 TGATTGGTGGTAAGGAAGGA 58 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 3 1 1 65 3 153951998 153952018 TTGATGATCGTCTGGTTACAC 58 153949302 153949323 GCATAAATCCGAATCATCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 1 2 2 81 3 161237439 161238011 ACCCTCATGATGTCTGGTG 59 161238056 161238074 CATGGATGGTTCCTACCCA 59 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000012545 1 1 2 81 8 122137095 122139301 ATGCCTTGCTCTTAGGAGAC 60 122140413 122140431 TCATCTGAGTGCATTCCGT 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000048985 3 1 8 152 20 4483902 4483921 CTACCAGCTAGCAGATGGAG 60 4484149 4484347 GAACAGGGAGTTATCCTGGG 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000005817 3 1 2 81 8 132173019 132173646 CTGTTCACAATGTACATAGCTC 57 132172959 132172978 CTTCTTCAAAGCAATGCAGG 58 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215 2 1 2 97 2 227199238 227206858 AAATCCATGGACACGATGTC 58 227199160 227199178 GCGATTACCGAAATGGGAC 59 NA Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 3 2 2 80 8 63146089 63146109 TTACAGGGTACTACTCATGGC 59 63143292 63146051 AGGAGTTATAGTTCCTCCTTCTG 59 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114 2 1 2 107 5 159576136 159576565 TGATCCAGACACTGGAGAG 58 159576047 159576065 TAACACAGACAGGTAGGCT 58 NA Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 2 1 1 78 16 49186353 49186371 CAGTACCTCAGAGCTCTGC 60 49186807 49186826 AGTAGTTGGCAAACTCTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 2 2 2 92 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697027 74697046 TAGTGGAAACCCACTGACAC 60 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000048858 3 1 3 183 20 155209 155228 CAACACCAACATGGGAATCG 60 154673 154694 GGACACATCAGAGCTGGAG 60 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462 1 1 2 112 5 128648123 128650885 TGAGAAACAGCAATCGCAG 59 128650961 128650979 TTCTTGTCTCGACCAGCAG 60 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 2 2 2 80 16 69070813 69070834 GATAACAAACTCTAGCTTGGGA 58 69070873 69074893 GGCTGGTATTTCTTCATGAGG 59 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 2 1 1 69 16 75428800 75428818 GTCTGTCTCCTTTGAAGGC 58 75429433 75429451 CTGCTTTAATGGCCATCCT 58 NA DesignNoJunction Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634 1 1 2 80 5 162247545 162247566 CAACTTCCCACATTCTACTGTC 59 162247607 162248288 CTTCTTCAGGCAAAGGCTG 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419 2 1 2 99 5 77151857 77151875 TGATATGGAGAGGTGGCAG 59 77151933 77156271 CATGAGGCACTTCTCATAATACTG 60 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419 3 1 2 100 5 77151856 77151874 CTGATATGGAGAGGTGGCA 59 77151933 77156271 CATGAGGCACTTCTCATAATACTG 60 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000017106 1 1 3 80 16 74800638 74800696 GCGCTAACAAACTTGTGAG 58 74800739 74800758 AGTCACTAGTCCTTGTTCCT 58 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 1 1 1 60 16 75668075 75668095 CTGCTTGGTCCAAAGAAACTC 60 75666675 75666693 GAAGCACACGGTGTTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000088458 2 1 2 80 16 71147897 71150983 AAAGAGATGTGAGAAAGGTGGA 60 71147838 71147857 TCTATGCTCAGGCATTCTGG 60 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 1 2 2 80 3 161021665 161024019 CACCCAAATTCTGAGCTTCAG 60 161024061 161024079 GACACCAGAATGCATGGTC 59 NA InUTR Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280 1 1 2 119 3 80855387 80873546 GGAAAGCCATCACCAAGTC 59 80855007 80855304 CTGCTGACTCACTCCAGTC 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280,ENSRNOT00000091265 3 2 2 80 3 80849931 80849953 CTTCAACAACTACTTCAGTCTGG 59 80849722 80849891 TTCTCTGGGTTGGCTTCTC 59 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803 1 1 2 107 3 64338564 64362752 GAACTTTAACACAATGGACCC 58 64338477 64338497 AGCTGACAGACATTACAAGAG 58 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 3 2 2 80 3 65864533 65869283 TTAAGCCACCAAAGGTTACC 58 65869324 65869344 GAATATCCAGGCAGATGACTC 58 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095 1 1 4 81 16 81912522 81912540 GACTTTGAGCCTCATCTCC 58 81897673 81912480 CATGATTTCATCTGCACTTGTC 58 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 2 2 3 94 16 75415445 75415463 CTAGATCAGGAGCAGCTGG 59 75414889 75415389 GACTTCACATCTGCATCTTGG 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677 2 1 2 97 3 159344522 159347507 AAAGAGGAGATGATTGACGG 57 159347567 159347585 TAGATCTTCAAAGCTGGGC 57 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963 3 1 2 115 16 81351451 81351469 GTCTGTCACAAACTCGCTG 59 81349442 81349882 TTCGCTTCAGACCTGAAGG 60 NA Rattus norvegicus 81 AY172581.18 ENSRNOG00000032609 ENSRNOT00000048525 1 1 1 60 MT 5122 5144 AGCCAGTAAGTAGGGTATTTAGC 60 5084 5106 GATTGGAAGGATTCAAACCTACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058391 ENSRNOT00000087130 3 1 1 66 5 9975082 9975100 GATCTGGCTGCATCATCTG 59 9975128 9975148 GGTAGCCAGTCAGATTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000053530 ENSRNOT00000080112 3 1 1 60 2 45268636 45268655 AGATCCACTCCTCCTTTCCT 60 45268678 45268696 CCAACCTTGCTTAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059800 ENSRNOT00000080157 1 1 1 60 2 126678678 126678696 CCTTCCTCTAGAGGACTGC 59 126678636 126678656 TATGACACCTACTGATGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013911.1 ENSRNOG00000049917 ENSRNOT00000071149 2 1 1 69 2 262679215 262679235 ATGAGATCTAGCTGTAAGGCA 59 262679166 262679184 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007924.2 ENSRNOG00000061331 ENSRNOT00000085814 1 1 1 60 2 35229205 35229223 GCACGATCATCCTGATCCT 59 35229163 35229182 CTGAGGAAGAAGTACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.1 ENSRNOG00000039689 ENSRNOT00000050796 2 1 1 62 11 43503666 43503687 CACTCTATCTGAATGTATGGCA 58 43503711 43503729 AAACATTCCGTGGTTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059307 ENSRNOT00000084167 2 1 1 60 2 145884821 145884842 CATGTTCATCAATGAGTGACAG 58 145884782 145884803 CATTCAGATGTTCAGGACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044408.1 ENSRNOG00000051805 ENSRNOT00000084490 1 1 1 108 20 4833323 4833343 TGTGTACTCCTGTGTACTCTC 59 4999954 4999972 TTAGCTGTGAGGAGCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056225 ENSRNOT00000087982 2 1 1 60 2 28449053 28449072 CTGTGTCACATGTGCATCAG 60 28449012 28449032 ACACTGAGCATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011117.1 ENSRNOG00000047819 ENSRNOT00000073520 1 1 1 60 2 158455573 158455595 CTCTTCCTCTTCTTCATCTTCTC 58 158455535 158455554 ACACTCCACCAACACTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056744 ENSRNOT00000092087 3 1 1 61 5 137274092 137274110 TACAGACATTAGCATGGCC 57 137274135 137274153 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054670 ENSRNOT00000078654 3 1 1 61 11 64397274 64397294 GCCCATCTAGTAAAGATGGGA 59 64397233 64397251 GTGTTATCCTTGCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060794 ENSRNOT00000077752 2 1 1 60 5 35315055 35315073 AAGGGTTTGTACAGAGTGC 58 35315097 35315115 GAGAACCCAATCTCAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034354 ENSRNOT00000052477 1 1 1 60 11 55071208 55071228 CTGGATCTTATCTGATCTCGG 57 55071249 55071268 TCCCATCTAAGCACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034354 ENSRNOT00000052477 3 1 1 60 11 55071204 55071226 CACACTGGATCTTATCTGATCTC 58 55071244 55071264 ATCTAAGCACTAACCAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059446 ENSRNOT00000089355 1 1 1 60 5 107757468 107757486 TGTGAGTCAGTAGGTGGAG 58 107757426 107757450 GATGTTCATAAGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058807 ENSRNOT00000084459 1 1 1 60 2 175713513 175713533 TCATATGTGCATCAGTCAGGA 59 175713473 175713493 TTCATAGATCAGCACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057730 ENSRNOT00000086533 3 1 1 70 2 237613098 237613116 GCTTCAGCAGCACATACAC 60 237613046 237613065 GTAATCCTAGTGCAGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059958 ENSRNOT00000090650 2 1 1 60 5 127092253 127092272 CTGTCAAGAGTATGCAAGCG 59 127092293 127092313 CTTGAGAGCTTTCCTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056546 ENSRNOT00000083499 1 1 1 60 11 67543369 67543390 AACATTGGAAGGATACAGAGGT 59 67543405 67543429 CCTTAATTAGTATGTCATCCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053500 ENSRNOT00000091501 2 1 1 69 5 13087033 13087051 CTGTATGGGCATCTGTGCT 60 13086982 13087003 TGAATTTCTATAGGGCTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061090 ENSRNOT00000086129 1 1 1 60 16 73531252 73531270 GTGTCACATGTGCACAGAG 59 73531293 73531312 CACTGAGCATAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061435 ENSRNOT00000085580 2 1 1 60 2 176276199 176276221 AGGACTATCTTCCCAGAATACAG 59 176276161 176276179 CGCAGCAACTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060841 ENSRNOT00000085575 3 1 1 60 8 87344520 87344540 ATGTGTCAGTAGGTGACAGAG 59 87344480 87344500 CACATGTCAGAACACCAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051532 ENSRNOT00000085683 1 1 1 75 16 20294815 20294834 GTTTAAACAGTGGTGCACAC 58 20294872 20294890 CTGATTCACTCTGGAGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059879 ENSRNOT00000079994 1 1 1 92 16 72133127 72133145 AGAGGCATTGCAATTGTGC 60 72133053 72133071 TTCATAGGCTACACTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059879 ENSRNOT00000079994 3 1 1 94 16 72133128 72133147 CTAGAGGCATTGCAATTGTG 58 72133053 72133071 TTCATAGGCTACACTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000077601 3 1 2 80 1 238375820 238376711 ACGATGAACTTTAAGGAAGCC 59 238375760 238375779 CCTCAGGAATCTGATGAGGT 59 Novel Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000076785 3 1 2 84 1 238413391 238435099 TTGAAGTTCTCAAGGAAGCA 57 238413326 238413345 AATGCAAACCACTTCTTTCC 57 Novel Rattus norvegicus 81 U4 ENSRNOG00000056506 ENSRNOT00000090136 1 1 1 82 8 55410604 55410622 CCAAGGCACGATTATTGCT 59 55410540 55410563 CAGCTCTGAAGTGTACATATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061353 ENSRNOT00000089730 1 1 1 60 8 21823126 21823146 GATCAGGATGTGACATCTGTC 58 21823168 21823186 AAGCTAGACCAGCCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061167 ENSRNOT00000080208 3 1 1 62 8 23032892 23032913 CAATGAGGTTTATCTAAAGCGC 58 23032936 23032954 CTGGGCTACATGGTGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025366.1 ENSRNOG00000045619 ENSRNOT00000074539 2 1 1 62 16 35524611 35524629 GGACTCCTAACAGCAGGAG 59 35524655 35524673 GAAAGGGATCCAAAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001416.2 ENSRNOG00000059359 ENSRNOT00000087706 3 1 1 60 1 42969037 42969055 TGATGCTGTCCAGATCCAG 59 42969079 42969097 TCAGACACATCTGTGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000055594 ENSRNOT00000088171 2 1 1 60 8 69096758 69096778 AGTCCTCACTGCTTATGTGAG 60 69096800 69096818 GTCGCCTTAGATAGCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052800 ENSRNOT00000086404 3 1 1 65 16 10740500 10740518 GAAGGTTGTTCTCCCTGCT 60 10740453 10740473 CAGGTAGATAGCAGACAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060982 ENSRNOT00000085780 2 1 1 60 X 98033358 98033376 CATGGGATCTCCAACTGCA 60 98033400 98033418 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059126 ENSRNOT00000082707 2 1 1 61 2 93809111 93809129 GTGCTTTCTTCAGCAACAC 58 93809154 93809172 AGGCCATGTTACTGTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045233 ENSRNOT00000070500 3 1 1 60 1 32051368 32051387 ACCACCATCTTGTTTGATCC 58 32051327 32051346 CCATCCAAATACAAAGCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067349.1 ENSRNOG00000059580 ENSRNOT00000084762 1 1 1 60 9 40965284 40965304 TATTCTGAGCTTCTTCCCACC 60 40965323 40965344 TGAAGGTAGAAAGTGAGAAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057887 ENSRNOT00000084201 3 1 1 60 9 79596969 79596989 ACTAGGAGTTGGAATAGGAGC 59 79597011 79597029 TACTGCAATACCAGGTCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038021.1 ENSRNOG00000056631 ENSRNOT00000086120 3 1 1 80 X 37348851 37348871 TACAGAATCCTTTGGGAGGAG 59 37347844 37348811 AAGCAACTCTTCTGAACTCTG 58 Novel Rattus norvegicus 81 AABR07002353.2 ENSRNOG00000053141 ENSRNOT00000082460 1 1 1 60 1 71924385 71924403 ACTGAAGCAGAAGTCCGAG 59 71924343 71924361 TAGGCTGGCTAAGAAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027010.1 ENSRNOG00000023936 ENSRNOT00000039245 3 1 1 60 17 10655415 10655434 GCCTAGTGGAGGAATATGTG 58 10655374 10655393 ATAGGCTTGAAGGTCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054342 ENSRNOT00000091987 3 1 1 60 9 78979955 78979973 GTCAGAAACGGAGCAAGTC 59 78979913 78979933 CTGGACAGATTTACTCTGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002835.1 ENSRNOG00000031073 ENSRNOT00000050523 2 1 1 111 1 86653683 86653709 CTACACAAAGGAATAGCAATAGGAC 60 86653778 86653796 TCAGGGAACACCCAAAGTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059882 ENSRNOT00000090941 2 1 1 60 9 55114572 55114594 GGAACGATACAGAGAAGATTAGC 59 55114534 55114552 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053669 ENSRNOT00000077361 3 1 1 60 2 182583924 182583945 GCTAGTTCAAATAGAACCACCT 58 182583966 182583984 CCATAACTTGACCGAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071814.2 ENSRNOG00000053687 ENSRNOT00000078308 2 1 1 60 8 131966154 131966173 CAAGTGTAACGAATGTGGGA 58 131966195 131966214 TCGCAAATGGAGAATAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055218 ENSRNOT00000086151 2 1 1 60 2 128826142 128826162 GATGAAGAATGCAGCTACCTG 59 128826184 128826202 TTCCATGATCAATGCGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056416 ENSRNOT00000081745 2 1 1 62 2 116480676 116480694 TGTGTTGTAGGTGGCAGAG 60 116480720 116480738 TGTCCACAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052951 ENSRNOT00000087155 3 1 1 60 X 9504821 9504839 CTGGTCCGAAGGTAGTGAC 60 9504858 9504881 GAGTTTAATCTGTAACTGACGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007743.1 ENSRNOG00000041964 ENSRNOT00000063717 3 1 1 72 2 26641755 26641776 GTGTGATATTTGGGACATACTG 57 26641704 26641722 CCAGGGAAATTTGAATGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058754 ENSRNOT00000089315 3 1 1 60 6 43429143 43429166 CTTAGGATGACACAAAGAAGACTG 60 43429183 43429203 TCACAGATTTGCACAACATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061529 ENSRNOT00000089851 1 1 1 64 2 122323226 122323247 GCAGCACATATACTGAAATTGG 58 122323272 122323290 ATGTCTTTCTTGCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059693 ENSRNOT00000091783 2 1 1 60 9 19851923 19851942 GGTACATGGTCTGTTTGAGG 58 19851882 19851900 TTCCACTCTGTCTAGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052223 ENSRNOT00000085999 1 1 1 60 6 77154979 77154998 GTCTCCTTTCTCCTTAGCAC 58 77154938 77154956 TCTTCCTCCAAGAGTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034183.1 ENSRNOG00000054643 ENSRNOT00000077854 1 1 1 80 11 56178781 56178803 AGATTTCACCTCACATGCG 58 56178719 56178738 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07010421.1 ENSRNOG00000049767 ENSRNOT00000073517 3 1 1 60 2 134953886 134953907 ATGTTAGGTGTTTGAGATCCAG 58 134953847 134953867 CTTGGCTTAGGTTCATTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014355.1 ENSRNOG00000060904 ENSRNOT00000090334 3 1 1 80 14 11546140 11546160 GTCCAGTTACGACTAGGAGG 59 11546079 11546098 GAAGGCTGCTTATGTTTGCA 60 Novel Rattus norvegicus 81 AABR07053065.1 ENSRNOG00000004381 ENSRNOT00000005784 3 1 1 60 3 89745508 89745527 AAATGGTGGTGAGCATAGGA 59 89745467 89745486 GTTTGCATGGACTTCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052324.1 ENSRNOG00000049891 ENSRNOT00000071774 2 1 1 62 3 47572503 47572521 CAACCAACAGACTGGTGTG 59 47572459 47572478 AGAGTGAGCCACTCAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000056449 ENSRNOT00000089605 2 1 1 60 16 90164114 90164134 AAACATGCCTGATCTCTTCTG 58 90164154 90164174 AGTACTAAGAAGGCTTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061766 ENSRNOT00000079181 2 1 1 60 16 61888923 61888946 GATATAGAGAAGATTAGCATGGCC 59 61888965 61888983 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057599 ENSRNOT00000086779 2 1 1 73 X 118116616 118116635 ACTTTCTCTTGACCAACTGG 58 118116671 118116689 CACAGTGTGACTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122968.2 ENSRNOG00000055261 ENSRNOT00000081962 3 1 1 100 3 52588347 52588365 CAGAGCAAAGAGCAGAGTG 59 52588428 52600475 TTGAGATGATCCTGTTCCGA 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000058029 ENSRNOT00000083186 1 1 1 60 16 58940292 58940310 CAAGCAGACGCCTAAAGAG 59 58940331 58940352 TCTATTGAAGTCCAGAAGAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058196 ENSRNOT00000086442 1 1 1 60 6 70134361 70134379 GTGTCAGTAGGTGGCAGAG 60 70134401 70134421 AATGTTCATAGGTCAGAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041010 ENSRNOT00000062763 1 1 1 60 16 47464369 47464387 CTCTGAAGCTAAGCAGGGT 59 47464327 47464346 TGTTTGAAGTTTGGTCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057559 ENSRNOT00000081018 1 1 1 60 16 56236985 56237003 GTGCATCATTAAGTGGCAG 57 56236943 56236961 GAATCCAAGCAGGTAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058534.1 ENSRNOG00000048207 ENSRNOT00000054624 3 1 1 66 7 122691127 122691145 GTTGGAATCTGGCACTGTG 59 122691079 122691097 TGGTATTGTAGGTCCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051820 ENSRNOT00000081404 1 1 1 60 X 43276856 43276877 GCCTTCAAGTATAGCTTCTCTG 59 43276817 43276837 ATAGCCTCTTTCCTCTGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073014.1 ENSRNOG00000005415 ENSRNOT00000007183 2 1 1 112 4 72523393 72523411 CTGTCCCTAAGATGCTGAC 57 72523486 72523509 AATCATACACTCCGTCACAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000059470 ENSRNOT00000081387 3 1 1 60 16 82517501 82517519 AGTTGAAATGTTGGCTGGG 59 82517459 82517478 GACATGCAAATCAACTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054601 ENSRNOT00000091014 1 1 1 60 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874230 TTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054601 ENSRNOT00000091014 3 1 1 62 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874232 TATTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056072 ENSRNOT00000082479 3 1 1 68 12 11622122 11622140 GAATGTGGAGTTCGAAGCT 58 11622072 11622090 CAACCCATCTGAGCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056995 ENSRNOT00000085198 3 1 1 61 11 14519041 14519060 TGTGACTACTGTGTCATGTG 58 14518999 14519020 GCATAGATATAGCTTCTGTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068746.1 ENSRNOG00000059493 ENSRNOT00000085020 2 1 1 60 9 117439560 117439580 CATCCTTCGAGATTTCCTCCT 59 117439520 117439538 GGTAAGCTTGTCTTCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027518.1 ENSRNOG00000052192 ENSRNOT00000080609 2 1 1 81 17 35125617 35126292 TATATTTGAAGGTGCCCTTGG 58 35125556 35125575 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056408 ENSRNOT00000084456 1 1 1 60 6 46921265 46921283 TCACATGTGCTTCAGTAGG 57 46921306 46921325 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026489.1 ENSRNOG00000050405 ENSRNOT00000073064 3 1 1 60 16 78601629 78601647 GGTGGCTCATTTAGAAGCA 58 78601670 78601689 AGGAAAGCCCATGTATAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000059321 ENSRNOT00000082750 1 1 1 60 1 42477195 42477215 CCAAATCTGAGCATCAGAAGG 59 42477232 42477255 CTCAGAACTATAGAGATCATGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013116.1 ENSRNOG00000053956 ENSRNOT00000087559 1 1 1 80 2 223121451 223121601 GCTTACAGGTGGTAAATGTGAC 60 223121639 223121660 ATGGTGACAATTTCTTCCAGAG 59 Novel Rattus norvegicus 81 AABR07013116.1 ENSRNOG00000053956 ENSRNOT00000087559 2 1 1 80 2 223121443 223121591 CTACTCTGGCTTACAGGTGG 60 223121631 223121652 AATTTCTTCCAGAGATGCAGAC 59 Novel Rattus norvegicus 81 snoU105B ENSRNOG00000055949 ENSRNOT00000086228 1 1 1 60 8 21908209 21908229 CATCTGATGAGAGCTTTGCTG 60 21908251 21908269 AGGGCGTTTACTTTGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044889 ENSRNOT00000070156 2 1 1 60 9 81051958 81051977 AACATGACCACTCTCATCTG 57 81052000 81052018 CCAAGTAGTAAGCAGGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096051.1 ENSRNOG00000049764 ENSRNOT00000071702 3 1 1 60 10 15615954 15615973 AGAGCCCATAGTTTCAAGAG 57 15615913 15615934 AGAATAGCCAATAAACTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060180 ENSRNOT00000078026 1 1 1 60 8 108159408 108159428 CCCTGAAGGCATTTATAGGGT 60 108159449 108159468 TTTCTGTGCTACCTACCGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056543 ENSRNOT00000090722 1 1 1 60 10 67489770 67489788 CTGTGTCTGTCACATCAGG 58 67489812 67489830 GCTTCTGAACACTGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058964 ENSRNOT00000086880 2 1 1 60 4 17842433 17842453 GGTCAAGGGTATATGAGTAGC 58 17842473 17842493 GACCTTCAATCTTGTTTGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054602 ENSRNOT00000080479 2 1 1 60 16 37214221 37214239 TCACATGTGCGTCAGTAGG 60 37214262 37214281 TCAGACCAGTGTGCATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118147.1 ENSRNOG00000056651 ENSRNOT00000078600 3 1 1 90 1 88193292 88193310 GAGTTTGACTTGGCTGCTG 60 88193101 88193121 CCTTTAGAGGACAGTGTTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD49 ENSRNOG00000057240 ENSRNOT00000081324 3 1 1 60 10 48927730 48927752 GAAACTAGAAATAGGAAGTGCCG 60 48927768 48927790 GTCAGCTAAATAGAGATGTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055436 ENSRNOT00000090856 3 1 1 75 2 8987438 8987456 TTATCCATTGCACTCTGGC 58 8987381 8987402 CACTGCCACAAATTATGTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062920.1 ENSRNOG00000052333 ENSRNOT00000087813 2 1 1 60 6 15190518 15190537 AGAAGATGGAGAAGCTGAGC 60 15190560 15190578 GACTTCCTCGAGCTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000085958 3 1 2 100 8 85605842 85605860 ATGTACCCTGGTACAGGGT 60 85619565 85619584 GGCAATGCAGCTAACTAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058858 ENSRNOT00000086322 3 1 1 60 3 40696289 40696307 AGAGAAGATTAGCATGGCC 57 40696247 40696265 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.3 ENSRNOG00000057463 ENSRNOT00000071415 2 1 1 80 2 52156635 52156656 AAGAATGCAGATCCCATGCT 60 52156698 52156717 GTGTCTGCTTTGATGTGGAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056614 ENSRNOT00000078905 3 1 1 81 6 117499485 117499503 CAGTGTTCACCAGAGGAGG 60 117499546 117499566 AAGTTGAGTTTCCTATTCCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051840 ENSRNOT00000079205 1 1 1 80 4 12183595 12183613 GTACTCACTTCAGCAGCAC 59 12183655 12183675 GCATGTTATCCTTGTACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055826.1 ENSRNOG00000054392 ENSRNOT00000086920 1 1 1 60 7 10587078 10587096 GAGGCATGAACGAACTCAC 59 10587036 10587057 GGCTTTACCACATTGATTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055932 ENSRNOT00000085715 2 1 1 60 15 4063622 4063641 TGACATCCTACACCTACCCT 59 4063581 4063599 CAATACAGACCAGGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071161.1 ENSRNOG00000050528 ENSRNOT00000072472 2 1 1 114 8 102877429 102877449 TTGGACCAGAGAAACACCT 59 102877521 102877545 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056206 ENSRNOT00000079530 2 1 1 76 4 87048938 87048956 ATTGCACCCACTTCAACAC 59 87048880 87048899 TGCATGTCTTCTTTGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056505 ENSRNOT00000086109 2 1 1 61 4 89366336 89366354 AATGCAAACACAGTGCCTG 60 89366379 89366397 AGTGTCAACGTAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054741 ENSRNOT00000089782 3 1 1 60 4 102139441 102139461 GCATTGCCAATGTTGTTTCTG 60 102139401 102139419 TAGCCTTTCTTCTCTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141152.1 ENSRNOG00000046520 ENSRNOT00000070924 3 1 1 60 4 9903119 9903140 CCTTGAACTCAGAGATTCTCCT 59 9903160 9903179 TGGTACAGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058065 ENSRNOT00000086207 1 1 1 60 4 130156085 130156104 TGTTTATGCACAGCGTTCAG 60 130156124 130156145 AGGCCAGTTAGTAATCATTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit1lb ENSRNOG00000036603 ENSRNOT00000076802 1 1 1 80 1 252916826 252922404 ACCATGAGTGAAGAATCTCGT 59 252916766 252916786 AACCAACTCCCAAGTAAAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055697 ENSRNOT00000086006 3 1 1 60 4 34460354 34460372 ATGAGTGACCTCTTCCTCC 58 34460395 34460414 AGAAATGTGCAGCTTTGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051705 ENSRNOT00000084453 1 1 1 60 9 3985938 3985956 TGAAATTGGACCGACACAG 58 3985977 3985998 AATGTGTACATCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051705 ENSRNOT00000084453 2 1 1 60 9 3985934 3985954 ATTCTGAAATTGGACCGACAC 59 3985975 3985994 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056741 ENSRNOT00000077432 2 1 1 60 4 26317950 26317969 TGAACGTTCTCCACATTCTG 58 26317992 26318010 TACTCAGTTCCCGACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD96 ENSRNOG00000060502 ENSRNOT00000088337 1 1 1 60 10 34151413 34151433 GAGACATTGTCAACCAATCCC 59 34151454 34151473 ACCCATTCAGAATTGCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.1 ENSRNOG00000027511 ENSRNOT00000000260 2 1 1 60 10 76313200 76313221 GCTGAAACTAGAAACCAAAGAC 58 76313161 76313180 AATCTCATCTTCGTCCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cyss ENSRNOG00000030857 ENSRNOT00000044345 1 1 1 80 3 144428561 144428582 CAATATGTTTGAAGACACAGGG 58 144427501 144428520 AGCAGAATTCATGCTCCTG 58 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000061624 ENSRNOT00000090030 1 1 1 67 4 77385901 77385919 GTTGGTCTGAAGGTTGTGG 59 77385949 77385968 GTCAAGTATGAGTGTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052505 ENSRNOT00000087339 1 1 1 60 7 140036819 140036838 CCCATAAGAACAACAATGCC 58 140036778 140036800 TCTGTGGATAGTAGTTTAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110709.1 ENSRNOG00000046944 ENSRNOT00000073153 1 1 1 60 1 274306402 274306423 AAGGACTATGGCAAAGAATCTC 58 274306441 274306462 TCTTGCATTTGAAGTACTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052561 ENSRNOT00000086055 3 1 1 61 10 86430176 86430194 ATACGTCCTCTATCCGAGG 58 86430133 86430153 CCTATTCCAACTCCTAGTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000054406 ENSRNOT00000078410 2 1 1 62 17 37186465 37186483 GGTGAGTTCCTCTTCAAGG 58 37186509 37186527 TTTCTTCCAAGTTGCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054627 ENSRNOT00000080400 1 1 1 60 17 23656304 23656325 CAGTTGAGGGTTATACATGTGG 59 23656265 23656283 GCACTGAGTTTGTTTGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054627 ENSRNOT00000080400 2 1 1 60 17 23656304 23656324 AGTTGAGGGTTATACATGTGG 58 23656264 23656282 AGCACTGAGTTTGTTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000057339 ENSRNOT00000077668 3 1 1 66 12 38496047 38496065 GATCCCTTCTCAGCCAGAG 59 38495999 38496019 TTATGACGATGATCCACAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 1 1 1 60 X 46934425 46934446 TCAATGTGATGACTCATCAGAG 58 46934385 46934407 AGGATACACAGTACTCCTTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA52 ENSRNOG00000058867 ENSRNOT00000081794 1 1 1 60 17 85330208 85330227 CTGCCAGAGTTGTGTAAGAC 59 85330249 85330268 CATGTTCAGAAGTGCTGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000056164 ENSRNOT00000079132 2 1 1 61 3 150417931 150417949 AGAGACTTTGACAGCCCAG 59 150417972 150417992 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 2 1 1 64 7 7291110 7291135 GATATCTTGTTCAGACACATGG 57 7291160 7291178 TGAATGTCAACACAGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_5_0819.1 ENSRNOG00000051227 ENSRNOT00000076005 2 1 1 87 5 78042103 78042430 GATGTGGACAAGCTCAATGG 59 78042035 78042053 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052985 ENSRNOT00000078584 2 1 1 60 12 46248019 46248037 GACTGTTCTTGGGTCAAGG 58 46248058 46248079 CTTGCTTGGATATTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056813 ENSRNOT00000092228 2 1 1 60 3 136819820 136819838 TGTCCTTAGAGGCTTTGCA 59 136819861 136819880 CTCTACTACCTACTGGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012310.1 ENSRNOG00000033499 ENSRNOT00000041480 1 1 1 151 2 192854572 192854590 TGTGTCTTCCTGCTGTAGC 60 192854439 192854458 GATGGCGATGGAAAGATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040749 ENSRNOT00000062502 1 1 1 60 3 160548743 160548765 TGACCTCTTCTGATCTTAGAAGC 60 160548705 160548726 GGCCTCCATTGAAGAATTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 2 1 1 88 1 214446760 214446782 GCCAGACTAGGAACACCAG 60 214446688 214446706 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 1 2 2 96 5 77246516 77246535 CTGAGTTCAGACATCAAGGA 57 77246269 77246457 GACAACGATCAGTCTTGGT 58 Novel Rattus norvegicus 81 SNORA74 ENSRNOG00000058587 ENSRNOT00000091686 3 1 1 60 3 142141689 142141708 GGTTTCCTTGTACCTAGGCA 60 142141731 142141749 CAACTTGCTATTGGCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000055316 ENSRNOT00000087677 1 1 1 60 1 143360189 143360207 GAAGTCAAGCTGACTCTGC 59 143360228 143360249 ACAAGACCTGTTCTATCTACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028150.1 ENSRNOG00000060132 ENSRNOT00000089527 2 1 1 93 17 57864978 57865517 AGGACCAGACTTCCATAATGG 59 57865571 57865590 TAGCCATTCTCATGGTCTCC 59 Novel Rattus norvegicus 81 U6atac ENSRNOG00000052520 ENSRNOT00000080959 3 1 1 64 10 93482430 93482448 GGACCTTGACAAGGATGGA 59 93482384 93482402 AAACAGTTGTTGCCTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058403 ENSRNOT00000078269 1 1 1 60 4 101781594 101781616 AGGTATGTTAGTAGGAGGTAGAG 58 101781556 101781574 GACATCAGTGAGCTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028185.1 ENSRNOG00000042036 ENSRNOT00000066719 2 1 1 60 17 59179942 59179963 AATGGACAGATCATGGAAACAG 59 59179903 59179924 CATGACTTCTCTTAGTCTGTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Btnl5 ENSRNOG00000049946 ENSRNOT00000088972 3 1 1 90 20 2942102 2942120 GGAATTTACTGCAAGCCCT 58 2940637 2942048 GGAAACCCTTTGTGGTCAC 59 Novel Rattus norvegicus 81 AABR07003935.13 ENSRNOG00000050415 ENSRNOT00000072072 1 1 1 60 1 121181149 121181168 CTGATGAGTCAGGCTACTGG 60 121181108 121181130 GCTTTGGTTATACTCAGAACTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.13 ENSRNOG00000050415 ENSRNOT00000072072 2 1 1 60 1 121181128 121181149 GTTATATTCCAGGGCTTATCCA 58 121181089 121181108 TTTAACACCATTCAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030901.1 ENSRNOG00000055889 ENSRNOT00000084845 1 1 1 82 10 108391505 108392397 CCCTCAAACGGAAGAACCT 60 108392443 108392461 GTATTTCCCATCAACGGCG 59 Novel Rattus norvegicus 81 AABR07002624.1 ENSRNOG00000028449 ENSRNOT00000052231 2 1 1 60 1 77830122 77830141 AACATGATCAAGGGTGTGAC 58 77830081 77830099 AGTGAGCATACACAGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362319 ENSRNOG00000061737 ENSRNOT00000081360 3 1 1 60 8 43661387 43661406 CTTCATCATTGCCAGCATCC 60 43661429 43661447 GCTGAAAGCTTTGGACCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061841 ENSRNOT00000090099 3 1 1 61 2 71271608 71271626 AGAGACTTTGACAGCCCAG 59 71271649 71271669 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060124 ENSRNOT00000085913 3 1 1 61 2 47092403 47092421 AGAGACTTTGACAGCCCAG 59 47092360 47092381 ACATATAGGAGAACTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000084331 1 1 3 107 9 4072912 4080823 ACACTAACTGTCTGCTTCTG 58 4081472 4081490 TAGCTGCTGTAATCTGCTC 57 Novel Rattus norvegicus 81 AABR07029863.4 ENSRNOG00000061193 ENSRNOT00000084581 3 1 1 60 10 56561481 56561500 AAAGAAAGAAGGTGGTGCTC 58 56561523 56561541 CCTTCCTCTGGGATGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061066 ENSRNOT00000079835 3 1 1 61 2 153324385 153324406 GAATGATACAGGGATTAGCACG 59 153324345 153324364 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056479 ENSRNOT00000085127 1 1 1 60 10 110408877 110408897 CAGAAGGGTAAAGGAAGTCTC 58 110408919 110408937 ATCCAAAGAGGAGGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 3 2 2 86 7 142860724 142861286 TGGATGTTAGCACATGACCA 60 142860657 142860675 ATTCCTTCACTGCTGACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061566 ENSRNOT00000086649 1 1 1 60 14 26311858 26311876 GTGGCAAAGAGTAGACAGG 58 26311897 26311918 CATTCAGATGTTGGTAACTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056,ENSRNOT00000071395 1 2 2 98 5 77314735 77314755 TCTGAGTTCAGACATCAAGGA 59 77314488 77314675 AGACAGCGATCAGTCTTGG 60 Novel Rattus norvegicus 81 AABR07014301.1 ENSRNOG00000047391 ENSRNOT00000071282 1 1 1 60 14 8065777 8065797 TGGATAGAATCCTCTTCCCTG 59 8065737 8065755 TACTGTCTGAGAGTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0635.2 ENSRNOG00000051341 ENSRNOT00000076867 2 1 1 60 X 62820653 62820674 AAGACTTGCCATTCTATGACCT 60 62820695 62820713 TTCCTGTAGCCACAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057955 ENSRNOT00000085138 3 1 1 60 10 89570415 89570433 AGTTGGAATAGGAGCTTGC 58 89570456 89570475 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000054612 ENSRNOT00000084408 3 1 1 60 3 4094133 4094151 AGAGGCTATGTCTACGCTC 58 4094091 4094111 GTCAGGCTACAAATCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016619.1 ENSRNOG00000059730 ENSRNOT00000091331 2 1 1 60 14 107180040 107180062 GGTGAAGGAAATATACAAGGCTG 60 107180080 107180100 ATGTTTGCTCTTGATTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056220 ENSRNOT00000084856 1 1 1 60 17 32897831 32897851 CCTTGTGGCTAAGATCAAGTG 59 32897870 32897891 GAACTTGTCTTCACCATCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.1 ENSRNOG00000054639 ENSRNOT00000073168 3 1 1 80 4 173974773 173974798 TCAAGTAACATATGGGAGACCT 59 173974841 173974861 ACATCAGTCCAGGATCTTCTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054110 ENSRNOT00000090821 2 1 1 60 17 82189673 82189695 GTTGAAGAAGATGATGTTCCCTG 60 82189711 82189733 CTCATAAACCCTTGACCAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054450 ENSRNOT00000077558 2 1 1 60 2 93811822 93811843 GTTGGAACGATACAGAGAAGAC 59 93811862 93811882 CATGAATTTGCGTGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501698 ENSRNOG00000051762 ENSRNOT00000078135 2 1 1 82 10 44506923 44506944 GTGATCTATTCAATTGCCACCC 60 44507468 44507973 CGTAGAAGAGCTTGGTTAACTG 59 Novel Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 3 1 1 67 10 83536084 83536102 TTGGCATTAGTCACTTGGG 58 83536134 83536155 TTACCAGAAGCCATGTACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 3 1 1 67 12 53933 54665 TAAGTTCAGCTCCCAGAGG 58 53884 53903 TAAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD12 ENSRNOG00000056200 ENSRNOT00000085589 3 1 1 85 3 163815552 163815572 TGGTGTAAATGATGACCTCAC 58 163815616 163815637 GTGTTATCAGAACTAACTGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054299 ENSRNOT00000087047 3 1 1 60 2 182944427 182944448 TCTTCAGTCAAGGATACATGGG 60 182944469 182944487 CTGAGAGGTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000066530 2 1 2 100 X 66516531 66516549 AAGAATTGCCATCAACCCA 58 66516284 66516467 AATCTTTGTACCTTGGGCC 58 Novel Rattus norvegicus 81 AC128759.1 ENSRNOG00000016095 ENSRNOT00000021545 1 1 1 81 1 22529364 22529382 TTCCTCATTGCAAAGCAGC 59 22529451 22529469 CTTTCCTCTCCCTCTTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034592.1 ENSRNOG00000051951 ENSRNOT00000085422 3 1 1 80 11 80310034 80310057 AGATTTCACCTCACATGCGA 60 80310098 80310118 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000056379 ENSRNOT00000088057 1 1 1 60 12 52411658 52411676 GGTCGTAAACAGCAACCTC 59 52411616 52411635 CCCTTAGGACAACCATACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126899.1 ENSRNOG00000011065 ENSRNOT00000014753 1 1 1 80 19 44396481 44396502 ATCAAACTAACCGACATCAGTG 59 44396269 44396290 CAGTTGGACATCAAGTGGG 59 Novel Rattus norvegicus 81 AC097038.1 ENSRNOG00000059928 ENSRNOT00000081357 2 1 1 81 10 46183017 46183040 GTGATCAACTCTATCAGGACTC 58 46183085 46183104 TGATGTTATTCTGTGGTGGC 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000055205 ENSRNOT00000089796 3 1 1 60 14 14319593 14319614 GGAAATACAAGGTGTAGTAGGC 59 14319554 14319573 TGCAATACCAGGTCAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058723 ENSRNOT00000085731 1 1 1 60 2 264523513 264523536 GAGAAAGGCTTTATCTATGCTCAG 60 264523550 264523573 AGGTTAGTAGTCATTCAGATGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051994 ENSRNOT00000089864 3 1 1 68 1 228262111 228262129 TGAGGTTTATCCGAGGCAC 60 228262159 228262179 GCACCTGATATGGAATTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076586 2 1 3 82 13 75164267 75164285 ATCTCTGACCCTTTCTGGT 58 75164330 75171889 TTTCAGTGGAGTTCATCCTC 57 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000055084 ENSRNOT00000077978 1 1 1 60 2 238839430 238839450 CTCCTTGGTAGTGTATGTAGC 58 238839471 238839490 TGTTTCCAAGTTCCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000061556 ENSRNOT00000086360 1 1 1 62 1 89994494 89994513 CCTGAAGAATGGCTTCTCTG 58 89994451 89994470 CCACATTTCAATGGTCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072363.1 ENSRNOG00000041613 ENSRNOT00000063366 2 1 1 60 14 2792138 2792158 TGGCCTTAAACTCAGAGATCC 60 2792178 2792198 ACATGCCTTTAATCCTAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052320 ENSRNOT00000085514 3 1 1 60 17 53056911 53056931 TACCAAGGTCAAATAGGTGGT 59 53056950 53056971 GAGCCAATACATTCATAGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061261.1 ENSRNOG00000053836 ENSRNOT00000084897 1 1 1 60 4 113101413 113101433 GCAAGTTTCACAACTTCTTCC 58 113101453 113101473 GCTGTCATGGAGTAGATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0046.4 ENSRNOG00000057666 ENSRNOT00000086191 1 1 1 60 20 2492380 2492399 TGGGATCTGGAGAACTTCTG 59 2492339 2492359 GCTAGTACAAAGTTTCTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055558 ENSRNOT00000083447 2 1 1 76 2 264595674 264595692 GTGCTTACTTCAGCAACAC 57 264595731 264595750 TTATCATCTTTGCTCACGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014426.1 ENSRNOG00000053903 ENSRNOT00000083237 2 1 1 80 14 15461681 15461723 ACTTTGGAAAGATGGCACC 58 15461619 15461640 TGATACACTTGGTTTCTCTGTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053716 ENSRNOT00000085818 2 1 1 60 14 19919461 19919479 GAATGGCTTCTGTGTCACG 59 19919419 19919438 TTAGACATAGCCTCCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014722.1 ENSRNOG00000036377 ENSRNOT00000054495 3 1 1 60 14 28075169 28075187 ATGCACCAGGTATCTCTGG 59 28075210 28075229 CCTAGTTGTGCTTGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057538 ENSRNOT00000082909 1 1 1 61 10 70581883 70581901 GTCACATGTGCATCAGCAG 60 70581840 70581859 GGTCAGAACATTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009221.1 ENSRNOG00000049504 ENSRNOT00000073391 3 1 1 80 2 89259193 89259216 AGATTTCACCTCACATGCGA 60 89259257 89259277 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053390 ENSRNOT00000085446 1 1 1 60 4 11558106 11558125 TTACAGGTAGCCATTGTGTC 58 11558148 11558166 ACATAGCCTCTGTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058378 ENSRNOT00000084332 1 1 1 60 2 83500177 83500195 TGTCCATTTGCTGATCACC 58 83500219 83500237 TTAAGCATCCACCTAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059887 ENSRNOT00000087478 2 1 1 60 1 265925699 265925721 GGAACGATACAGAGAAGATTAGC 59 265925661 265925679 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002906.1 ENSRNOG00000048447 ENSRNOT00000074997 1 1 1 80 1 88780025 88780046 AACCTTTCTCTGTCTGTCAC 58 88780088 88780107 GTGATGCCCTAAAGAATCCT 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000055115 ENSRNOT00000079551 2 1 1 60 5 5601713 5601731 AAGTGCAGAGTCAAGGAGG 59 5601671 5601691 TCATGACTGAAGACTGATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052786 ENSRNOT00000077736 3 1 1 60 5 39533681 39533700 TAGAGGTATTGCCAGTGTGG 59 39533721 39533741 TCTCCTTTGTGACACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015078.2 ENSRNOG00000059504 ENSRNOT00000080984 3 1 1 61 14 46650338 46650356 CTGTTCACCTTGGAGACCT 59 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066529.1 ENSRNOG00000048462 ENSRNOT00000072501 3 1 1 80 9 10789389 10789408 ACAGTTGGGAGTTAACAACC 58 10789449 10789470 CAAGGTTTCTCCAACTCAGTC 59 Novel Rattus norvegicus 81 AABR07003935.6 ENSRNOG00000047713 ENSRNOT00000074576 1 1 1 60 1 121212174 121212192 ATCTGATCAGTCAGGCTGC 60 121212132 121212152 TTTGGTTATACCCAGGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.6 ENSRNOG00000047713 ENSRNOT00000074576 2 1 1 60 1 121212176 121212194 AGATCTGATCAGTCAGGCT 58 121212134 121212152 TGGTTATACCCAGGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054674 ENSRNOT00000091274 3 1 1 60 2 1587402 1587423 GATACGGAGAAGATTAGCATGG 59 1587443 1587462 GAACACTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC242953.1 ENSRNOG00000056639 ENSRNOT00000080441 2 1 1 80 Y 845601 845621 CAAGACTTCACTACCTACTCC 57 845662 851994 TTGCTGTCATCATCCTTCTC 58 Novel Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 3 1 1 67 19 37021308 37021486 TTTCAGCTAGCAATGGCAC 59 37021259 37021280 CGAGTCTTTATAAGCCAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053389 ENSRNOT00000082434 2 1 1 66 5 42557919 42557938 GCAATGCCTATTCATTGCAC 59 42557964 42557985 GCTGGTTTACTATATTCAGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 3 2 5 97 2 123761677 123762137 TCATTACAAGATGCCAACGT 58 123762197 123762215 ATGATGAGCTCAGCATCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055144 ENSRNOT00000089647 3 1 1 62 14 82322593 82322612 GGACGATACAGGGATTAGCA 59 82322635 82322655 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056353 ENSRNOT00000082195 3 1 1 60 1 88671689 88671711 GATACAGAGAAGATTAGCATGGC 59 88671651 88671670 CAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058573 ENSRNOT00000079603 3 1 1 60 12 2707017 2707038 GGGTTGATCTAGCTGATATGGT 60 2707056 2707077 ACGGAATTGTAAGGGATAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000054872 ENSRNOT00000086564 2 1 1 60 10 105646453 105646475 GGATGATCTAAGTTATCCCTGTC 58 105646491 105646513 CTCAGTAAACCGTGAATCTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123293.1 ENSRNOG00000060034 ENSRNOT00000078270 2 1 1 60 6 122653457 122653475 GAAGCTAGTGAAGTGGGAG 57 122653415 122653433 GTGTCTTGCTTCAACAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123293.1 ENSRNOG00000060034 ENSRNOT00000078270 3 1 1 60 6 122653461 122653479 GCTGGAAGCTAGTGAAGTG 58 122653419 122653438 CTTGCTTCAACAGTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058302 ENSRNOT00000090879 2 1 1 68 14 45942016 45942035 CTAGAGGCTTTACAGGTGTG 58 45942066 45942084 TAGTCTTTCACCTCCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061229 ENSRNOT00000091415 3 1 1 60 14 19795415 19795433 GGGCATCAGTAGGTGACAG 60 19795373 19795391 CACAGGTCAGACCAGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000055875 ENSRNOT00000079884 2 1 1 61 14 105906728 105906746 AAGCCCTCATGGAGTAACC 59 105906771 105906789 CCAGTACCCTGAGAAATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060673 ENSRNOT00000081100 1 1 1 60 14 106140453 106140473 GTCCCATGTGAATCAGTAGGT 60 106140413 106140435 GAACACTGAGATTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054419 ENSRNOT00000077353 1 1 1 66 6 75614298 75614316 TTATCCATTGCACTCCGGA 59 75614346 75614364 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054419 ENSRNOT00000077353 2 1 1 67 6 75614297 75614315 CTTATCCATTGCACTCCGG 58 75614346 75614364 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0834.1 ENSRNOG00000051201 ENSRNOT00000076395 2 1 1 80 13 78500406 78500424 GCTGTGAGATGAAGTGCTG 59 78498746 78500362 CCAGGGACTCATCAGTCAC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055752 ENSRNOT00000091477 1 1 1 60 14 12686316 12686334 TCTGTCACATGTGCATCAG 58 12686274 12686295 AACATTGAGCTTAGATGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053702 ENSRNOT00000084319 3 1 1 63 1 282492769 282492793 CAATACAGAGAAGATTAGCATGACC 60 282492811 282492832 TGGAAGGCTTCATGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061060 ENSRNOT00000082515 1 1 1 60 3 120039706 120039725 CCCACATTGATTAGGCTGAC 59 120039665 120039683 AAATTGTGAGGGAGGAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060977 ENSRNOT00000080366 3 1 1 60 6 138014530 138014550 ACAGTACACAGGAGACTAACG 59 138014569 138014590 ACGCTTCAAGAACTTGAATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054059 ENSRNOT00000079461 2 1 1 63 1 236005226 236005247 GGAATAACACAGAGAAGATCGG 59 236005268 236005289 CCTGCTCATGAATTTGTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009052.1 ENSRNOG00000049844 ENSRNOT00000072419 1 1 1 67 2 85818925 85818943 GAGATCCAGGTGTAAGGCA 59 85818974 85818992 TGGTATCACCCACAAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 3 2 2 90 18 14776136 14905595 GCCTGGATGTTCAAATTGGG 60 14905648 14905666 CCATGCGATGATGTCATGC 60 Novel Rattus norvegicus 81 AABR07053504.1 ENSRNOG00000031161 ENSRNOT00000043677 2 1 1 60 3 111298758 111298781 ACTCAGATGTATGATGGATCTCAG 60 111298799 111298818 TTTCTGAATCATCCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060968 ENSRNOT00000077699 2 1 1 60 2 244824693 244824715 GGAACGATACAGAGAAGATTAGC 59 244824735 244824753 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847,ENSRNOT00000083943 3 2 2 84 16 31291864 31292343 ACACTGCTATGTGTTTAGTCAG 59 31276280 31276301 CAGGGTTAAGCAATTATCTGGT 59 Novel Rattus norvegicus 81 AABR07003537.1 ENSRNOG00000021484 ENSRNOT00000032154 3 1 1 60 1 114174999 114175018 CTCTGTGGTAAATCCAGCCT 60 114175037 114175059 CTTTAGTTCTGGTACCCATTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD73 ENSRNOG00000052487 ENSRNOT00000079032 3 1 1 61 2 185443036 185443054 GATGACAGGATGTTTCGGT 58 185442993 185443013 CAGCAAGAAATGTTATCGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044065.1 ENSRNOG00000028578 ENSRNOT00000030142 3 1 1 80 19 54872628 54872649 CCAAATGTGTAACAATCATGCC 59 54872372 54872589 TAATAGTGGCCTCTTAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000051787 ENSRNOT00000078042 2 1 1 61 1 56880589 56880609 GACAACCGAATTCAAGAACAG 58 56880548 56880568 CTCAGTGTAGTCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007690.2 ENSRNOG00000041749 ENSRNOT00000063502 1 1 1 74 2 24178742 24178760 GCTGTTAAATGGCGATCCT 58 24178798 24178816 TGGCTGAAGAGACTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120070.1 ENSRNOG00000054181 ENSRNOT00000085373 2 1 1 80 1 148281923 148285896 TCCCAAAGGGAACAAAGGT 59 148285940 148285958 CAAACATCTCTGGGTTGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059197 ENSRNOT00000083037 2 1 1 60 2 180900895 180900917 GATACAGAGAAGATTAGCATGGC 59 180900937 180900955 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059197 ENSRNOT00000083037 3 1 1 60 2 180900894 180900916 CGATACAGAGAAGATTAGCATGG 59 180900936 180900954 AACGCTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059398 ENSRNOT00000084316 2 1 1 60 10 4629567 4629586 ATATGAGTAGCTGCACTCCC 59 4629526 4629545 TTGGCCAATCACTTCTAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.2 ENSRNOG00000052769 ENSRNOT00000089249 1 1 1 149 X 134021341 134021476 GAAGGTGAGAACGTCTCAC 58 134021198 134021218 GCTAGGGAGTCATACATTCTC 58 Novel Rattus norvegicus 81 ENSRNOG00000054605 ENSRNOT00000092043 2 1 1 85 10 14570125 14570144 AATGGTGAATGAGTGGAGCT 59 14570192 14572382 CTTTCCGTTTGGCACTTCC 60 Novel Rattus norvegicus 81 ENSRNOG00000054605 ENSRNOT00000092043 3 1 1 86 10 14570124 14570143 GAATGGTGAATGAGTGGAGC 59 14570192 14572382 CTTTCCGTTTGGCACTTCC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000059590 ENSRNOT00000081502 2 1 1 60 1 73770447 73770466 GAGGCTTATCTACCACATCC 57 73770406 73770425 AATTTGGGCAAATTGTAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017870.2 ENSRNOG00000054808 ENSRNOT00000084376 3 1 1 84 15 32060794 32060985 GATTTGCTGGGTGAGAGGA 59 32061032 32061051 ACATCTCAGAGCAGGATTGG 60 Novel Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 1 1 1 69 X 123024326 123025428 GCCATGACTTCTGAAGGTG 59 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017824.2 ENSRNOG00000051728 ENSRNOT00000092182 3 1 1 70 15 31417215 31417233 CTAGGCCTTCACCTGTCTG 60 31417404 31417422 GGACTTTGTTTCACCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045211 ENSRNOT00000070478 3 1 1 60 5 115698808 115698827 AGAAGCTAAGCAAGATCAGG 57 115698848 115698868 CTAGGAGCTATCACTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010609.1 ENSRNOG00000051802 ENSRNOT00000089823 2 1 1 108 2 143405797 143405816 CCAAATGGCTGAGAAACACC 60 143405884 143405910 TTTGATCATTCTCACTGGTGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061674 ENSRNOT00000079878 3 1 1 61 1 253866779 253866797 CCATAGAGGCATTGCTGGA 60 253866816 253866840 TCTCCTCTACCATGTATTGATACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054906 ENSRNOT00000091247 2 1 1 60 1 5740174 5740192 TGTGTCACATGTGCATCAG 59 5740213 5740234 AACACTAAGTGAAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.2 ENSRNOG00000041608 ENSRNOT00000063361 1 1 1 60 1 84017174 84017192 CAGGGAGGCATAGTGAGAG 59 84017214 84017234 CAGGGCTACATAGTAAGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD127 ENSRNOG00000055941 ENSRNOT00000080348 2 1 1 69 6 86805578 86805599 GCAACTGTGATGAAAGATTTGG 59 86805629 86805647 TTAGAGGGACTGTTGTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051526 ENSRNOT00000084524 3 1 1 60 6 67112946 67112965 TGTTCTAGCTACACCCTTCC 59 67112988 67113006 GCTTGGGAAGGTAGACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052986 ENSRNOT00000084926 1 1 1 78 7 70701303 70701323 CTTACTTCACAGCACATTCAC 58 70701245 70701263 TTGTGCGTCATACTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059932 ENSRNOT00000088663 3 1 1 91 14 48993476 48993494 GAATCACTGTAGGTGTGGC 58 48993543 48993567 CATGGTCAGATCTTTGAATGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.2 ENSRNOG00000059138 ENSRNOT00000083129 1 1 1 60 5 59113556 59113574 AAACAGCTTGTGGTGAAGG 59 59113514 59113533 CGCTTGTGGATTCTCATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059747 ENSRNOT00000087317 2 1 1 60 14 85784488 85784507 CCTGCCTCAGTAGGAAAGAG 60 85784447 85784466 CTCAGGTGTTCAGAAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD24 ENSRNOG00000060649 ENSRNOT00000091054 1 1 1 60 13 78853456 78853476 TTTGCTACTCTTGACAGTTGG 59 78853493 78853516 CCTCAGTTATGATTAATGGTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059323 ENSRNOT00000089011 3 1 1 60 1 188590265 188590283 AGAACAATCTGCATGCCAG 59 188590223 188590241 AGGCACTGTGATAACCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068253.1 ENSRNOG00000022614 ENSRNOT00000030314 3 1 1 60 9 93017837 93017856 TCAAATCTACTGAGAGCCGA 58 93017875 93017897 TACTCTTGTTCTTCTTGTCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 2 1 1 66 1 92088380 92088403 CTCTGTCATCTGTTCCTATGAG 58 92088335 92088353 AGAATGTGCAGGGTACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054606 ENSRNOT00000090135 2 1 1 60 13 14773195 14773214 AGTACATCAATAGGTGGCAG 57 14773236 14773255 ACCAGTCAGAACACTAAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052808 ENSRNOT00000085212 1 1 1 60 9 64894159 64894178 ATGCACTAAACCTGGAAGGA 59 64894201 64894219 TTCCGTGTCATCTGTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052846.1 ENSRNOG00000051973 ENSRNOT00000084116 1 1 1 60 3 79090535 79090554 TGTTCCTTCCTGTGTATGTG 58 79090494 79090515 CTGACTGCCACAATAATAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052846.1 ENSRNOG00000051973 ENSRNOT00000084116 2 1 1 60 3 79090150 79090171 ATCCAGATCCTCATAACCATCC 59 79090111 79090132 AGTAGTGGTCAATTACATTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051348.1 ENSRNOG00000059455 ENSRNOT00000081193 1 1 1 80 3 5328386 5328405 AACCCATTGGTTGTGTTCAG 59 5328241 5328346 AATTTGGCCAGATGTAGTAGAC 58 Novel Rattus norvegicus 81 SNORA55 ENSRNOG00000053801 ENSRNOT00000090034 1 1 1 60 7 2874377 2874396 AGAAGAGGAAATTCAGACGG 57 2874419 2874437 GCAGAGTTGTAGAGACAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059255 ENSRNOT00000079074 1 1 1 62 20 45357217 45357239 CTAGAGAAGTTTCTCTGACTGTG 58 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 2 1 1 84 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673893 110678052 TCCTTCATGTTCATGGTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AC134009.1 ENSRNOG00000053038 ENSRNOT00000090744 3 1 1 72 19 55510478 55510498 AAGAACAGGAGGACGTGTG 60 55510534 55510554 CTGGCTGCAGTGACTAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000059543 ENSRNOT00000089008 1 1 1 60 10 86506613 86506635 GGAACGATACAGAGAAGATTAGC 59 86506575 86506593 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059543 ENSRNOT00000089008 2 1 1 60 10 86506608 86506630 GATACAGAGAAGATTAGCATGGC 59 86506570 86506588 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054211 ENSRNOT00000079512 1 1 1 60 4 63589460 63589478 TGCATCATTGGTGACAGAG 58 63589500 63589520 TTCATAGGGCATAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072440.1 ENSRNOG00000033030 ENSRNOT00000042119 3 1 1 60 15 18532701 18532720 GACGTCCCAACTAAGAGACC 60 18532660 18532681 CCAAAGTGGTGACTGTATTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058618.1 ENSRNOG00000049992 ENSRNOT00000070829 2 1 1 60 7 128017777 128017795 ATGCCTCCATGAGATCCAG 59 128017735 128017754 GCTCTCCTAGCCTTTATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059024 ENSRNOT00000084288 1 1 1 79 3 122612680 122612698 ATGAGTCTCTGCAGGTGTG 59 122612741 122612759 TGAGCTTAGGCACAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059024 ENSRNOT00000084288 3 1 1 82 3 122612677 122612695 GAAATGAGTCTCTGCAGGT 57 122612741 122612759 TGAGCTTAGGCACAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059285 ENSRNOT00000085955 1 1 1 61 14 23935955 23935973 CCACGATTACAACGTTGGT 59 23935912 23935930 TCATTGTACCTGGTGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055388 ENSRNOT00000083616 2 1 1 78 3 70717013 70717036 CGGCAGCACATATACTAATATTGG 60 70717072 70717091 ATGAATTTGCGTGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059596 ENSRNOT00000082282 1 1 1 60 7 97676473 97676491 TGAGTGCCAGGTTCAAGAG 60 97676431 97676450 CCTTGGCTGAAGATTAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000059422 ENSRNOT00000077983 1 1 1 60 3 154847912 154847930 CCGAAAGACGTGTTCTGAG 59 154847870 154847891 GTAGGAAAGCTCTAGGATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059832 ENSRNOT00000082131 1 1 1 60 5 74842249 74842269 GAGGCAAAGATTAGCAAGTCC 59 74842288 74842309 TAGGAACATTTCATGAATCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000082773,ENSRNOT00000071700 1 2 4 80 9 81646700 81646718 GGAGAGGAAGATGAGCGTC 60 81646762 81646937 GTCTTCGTTTCCTCACCCT 59 Novel Rattus norvegicus 81 AABR07047249.1 ENSRNOG00000036483 ENSRNOT00000054591 1 1 1 75 5 25214887 25214906 CTGGAGTATTGTCAGCACAC 59 25214944 25214962 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052197 ENSRNOT00000085551 3 1 1 73 3 79566451 79566469 ATGCCAGAGTAACGGAGAG 59 79566505 79566524 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059782 ENSRNOT00000086132 3 1 1 60 7 5659787 5659807 GTGATCTGACTGAGACATCTG 58 5659826 5659847 CAGATAAGCAGCTCAATCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126292.1 ENSRNOG00000050606 ENSRNOT00000073623 3 1 1 60 5 135610999 135611020 GGCTTTAAACTCAGAGATTCAC 58 135611040 135611059 CACAGGCCTTTAATCCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049466.1 ENSRNOG00000053013 ENSRNOT00000077106 1 1 1 68 5 122136510 122136528 AAATAGCAGTTCCGTGCTG 59 122136561 122136579 TGGCTTCTACTACAGCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047576.1 ENSRNOG00000048750 ENSRNOT00000075765 3 1 1 80 5 38019015 38019038 AGATTTCACCTCACATGCGA 60 38018954 38018974 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054252 ENSRNOT00000084629 2 1 1 60 5 113399659 113399679 CTCAGAACAAGGTCTCAAAGG 59 113399619 113399639 ACTGTGCTATCTTACATGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056688.1 ENSRNOG00000043567 ENSRNOT00000068834 1 1 1 65 7 36917681 36917699 AGGGAAGTATGTCACTGGG 58 36917634 36917652 AATGACACTAGGCCTGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057073 ENSRNOT00000087802 3 1 1 60 13 83715710 83715731 AAGTTAGATTGGTGGAAGAGGA 59 83715671 83715690 GTGTGGCTACTCTACATACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054120.1 ENSRNOG00000045370 ENSRNOT00000070637 1 1 1 70 3 142141740 142141758 TAGCAAGTTGGCATTCTGG 58 142141792 142141810 ACTATGCTGACATCCTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044555.1 ENSRNOG00000041610 ENSRNOT00000063363 2 1 1 61 20 10530692 10530710 TTCTCCTGTTTGCCTCGAG 60 10530735 10530753 CAGCTGTGAATGGAAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000059556 ENSRNOT00000087808 1 1 1 65 13 103192518 103192536 AAGTGTTGAGTTCAGCCCA 60 103192563 103192583 CAGCTTCAATGTTCCAAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052755.2 ENSRNOG00000032597 ENSRNOT00000043221 2 1 1 60 3 73438769 73438788 TGTAGGACTGACAGATGACC 59 73438726 73438747 GTAGATGACTAGAAACACAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053488 ENSRNOT00000085587 3 1 1 62 6 47841281 47841302 CGGAACAATACAGAGATTAGCA 58 47841325 47841343 AACGCTTCACGAATTAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060637 ENSRNOT00000088982 2 1 1 81 19 43403052 43403070 ACCTGCTTTCCTTTGACTG 58 43403112 43403133 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059658 ENSRNOT00000087335 3 1 1 60 20 23530603 23530625 GTACATCAATAGGTGTTGGAGAG 59 23530565 23530583 CCCAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054566 ENSRNOT00000089030 1 1 1 61 19 44829896 44829914 TAAGGACGATCTGGCTGTG 59 44829939 44829957 ATCAGCCAAGTCAGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000077046 1 1 2 80 2 157070542 157070563 AACTGTTTGGAAGAGAACTCAG 59 157070070 157070504 TTAGTAGGTACAGCATGTCCAG 59 Novel Rattus norvegicus 81 Rn60_X_0713.4 ENSRNOG00000051298 ENSRNOT00000076301 3 1 1 60 X 70423022 70423041 TCTCCAGACAATACTTGCAC 58 70422981 70423004 AGTATAGAGGTCAGACAGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054968 ENSRNOT00000090088 2 1 1 60 7 15051513 15051533 AGACACCATGATCATGAAGGT 59 15051473 15051495 ACATCCCAAGTACAGTAGATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD74 ENSRNOG00000054347 ENSRNOT00000088715 2 1 1 60 13 78852758 78852778 GAAGGTTATGTTGGTAGGGAC 58 78852799 78852818 CTGCCATCAGAATTGTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018627.1 ENSRNOG00000038122 ENSRNOT00000058010 3 1 1 60 15 66165744 66165764 ACATCAGATCTTGCCTAAGGA 59 66165783 66165804 TTCAAGGTAGAATTTGTCCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034350 ENSRNOT00000052473 1 1 1 60 7 128122504 128122523 TCCCGATCTTGTCTGATCTC 59 128122543 128122564 ATCTTCTAAGTAATGACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061641 ENSRNOT00000078641 2 1 1 60 15 101505233 101505251 GACTTTGGTGTGCAATGGT 59 101505270 101505293 GACAATAGGCTACATACACTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053352 ENSRNOT00000089317 1 1 1 60 13 3086752 3086770 GTGACAGTGAGCAAAGAGG 59 3086710 3086731 CAATTAGATCTCCACAGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000054644 ENSRNOT00000080954 3 1 1 61 X 125425675 125425694 CATAGTGTCCCGTGCTAGAG 60 125425718 125425736 CCTACATACACCGAGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060375 ENSRNOT00000087641 3 1 1 60 13 2145770 2145789 TACCATAGAGGTGTTGCACG 60 2145810 2145830 TCTCTACCATGTACTGATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.2 ENSRNOG00000051082 ENSRNOT00000077029 3 1 1 60 X 73556850 73556868 GAGTCAGAGATAGGCCCAG 59 73556891 73556910 AAGTGTTCCTTGAACACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054655 ENSRNOT00000090927 3 1 1 60 9 117907977 117907995 TTGTGCTACTGGAGCTCTG 59 117907935 117907955 TTGACTTAAGACGTGTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057937 ENSRNOT00000086070 1 1 1 60 19 56242974 56242995 CAGATCGTATAAATCTTTCGCC 58 56242935 56242954 ACTCACAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052723 ENSRNOT00000081053 2 1 1 60 18 1874221 1874240 CAGTAGATGGCAGAGTGGAG 60 1874180 1874201 AGATGTTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052723 ENSRNOT00000081053 3 1 1 60 18 1874221 1874239 AGTAGATGGCAGAGTGGAG 58 1874179 1874201 CAGATGTTCATAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058879 ENSRNOT00000089412 1 1 1 60 19 56323250 56323269 TTGGCTCTGTCATTTGTCAC 59 56323291 56323310 GGCCAACTTAATCAGCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053714 ENSRNOT00000078852 3 1 1 71 15 19143462 19143481 TGAATAGAGGAGGACTGGTC 58 19143515 19143533 TGTTTGGAGGTTCTAGCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055039 ENSRNOT00000082441 3 1 1 60 15 41809799 41809820 GTAAGTGCCTTTGAAGAGTGTG 60 41809840 41809859 ACACTAGCTGGGTGAATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068249.1 ENSRNOG00000054014 ENSRNOT00000090655 1 1 1 60 9 92791442 92791461 CCTCATGTAGGAACTCGAGG 59 92791482 92791502 GATTCCTGTACTCTTCAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029741.1 ENSRNOG00000055994 ENSRNOT00000088207 2 1 1 60 10 48890806 48890824 CTGACAAACCCGATATGGT 57 48890846 48890866 TCTGTCTTCTTCAACTTCGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000057114 ENSRNOT00000091740 3 1 1 60 18 47047088 47047107 GTCAGTAATTGACACAGCCA 58 47047127 47047148 ATCAGCCATCTTAAAGGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057467 ENSRNOT00000081742 1 1 1 68 5 133644746 133644764 TCCACTGTACTCCAGATGC 59 133644696 133644714 CAAATCATGCAGCCGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059101 ENSRNOT00000086388 2 1 1 60 4 98855119 98855140 CTTACCTGTCAGGGATATACCA 59 98855080 98855098 TGAATATGCTTAGCCCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034730.1 ENSRNOG00000046027 ENSRNOT00000071362 3 1 1 80 11 85475144 85475167 AGATTTCACCTCACATGCGA 60 85475208 85475228 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000061074 ENSRNOT00000077984 2 1 1 60 18 69588427 69588448 ACTTATCTCAGTTGATTGCTCC 58 69588468 69588487 GGGAACACGTAGAATAGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056090 ENSRNOT00000078357 3 1 1 60 4 40615246 40615267 TTATCAGTTGAGTGACAGAGGG 60 40615285 40615306 GTACATAGGTTAGAACACCGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057894 ENSRNOT00000091844 1 1 1 60 15 8774535 8774553 GTAAGTACATGGCCCTGCT 60 8774493 8774513 CGTGTCAGCTATGTTGATTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000053940 ENSRNOT00000091070 1 1 1 60 18 36888396 36888416 ACTGAAGTCCTCTGTTCATCC 60 36888437 36888456 GGTGGGTAGGTAAATCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000053940 ENSRNOT00000091070 2 1 1 63 18 36888443 36888461 TTTACCTACCCACCCTCAG 58 36888488 36888506 CTGAATTACCCTCCCACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053120 ENSRNOT00000089649 2 1 1 62 15 53961175 53961196 GGTGATACCATGGTCATAAAGG 59 53961216 53961237 GGAAATCACATAAGGCAAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054705.1 ENSRNOG00000059645 ENSRNOT00000085779 2 1 1 80 3 167219551 167219689 GAAGAGTCTCTACCAGGGTG 59 167219133 167219157 GTAGTATTGTCTTCCCAAATGTAGC 60 Novel Rattus norvegicus 81 AC112350.1 ENSRNOG00000047508 ENSRNOT00000073542 3 1 1 83 3 114182626 114182644 TCATGAAGCTGCCTACACC 60 114182559 114182585 GAAGACTTCTTGTACTTATCTGCTC 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056663 ENSRNOT00000079331 2 1 1 60 18 46914175 46914194 CGTTAAGAACGCACTAGCTC 59 46914134 46914154 AGTGTCCATGATCAATGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053681.1 ENSRNOG00000043539 ENSRNOT00000068806 2 1 1 60 3 120143644 120143664 GCCTTGAACTCAGAGATTCAC 59 120143604 120143623 GCACATGCCTTTAATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056511 ENSRNOT00000082954 2 1 1 60 7 117016977 117016995 CTACACTTGGACAGACTGG 57 117017019 117017037 CTCTGGTGACAGATACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021861.1 ENSRNOG00000053085 ENSRNOT00000088174 2 1 1 100 13 95958431 95958449 TGAGCTGCTCTTCATGACC 60 95958345 95958368 ATAGCCAAGGTTGTACTGCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059332 ENSRNOT00000082558 3 1 1 60 9 112101920 112101942 GATACAGAGAAGATTAGCATGGC 59 112101961 112101980 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060360 ENSRNOT00000084923 2 1 1 61 18 31444769 31444791 GATGATACAGAGATTAGCAAGGC 59 31444810 31444830 CAGAACGATTCAGGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091,ENSRNOT00000076399 1 2 2 93 1 31264856 31264874 AGAAGATCACGCATACCGG 60 31264931 31265825 CATCATACACCTTGCCACG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000052888 ENSRNOT00000078648 2 1 1 60 18 24205979 24205997 TAGAAGCATTGCAGGTGTG 58 24205937 24205957 TCTCCTCTTTGTCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000051978 ENSRNOT00000084995 3 1 1 60 10 105648380 105648404 CTAAGGATGATCTAAGTTATCCCTG 58 105648420 105648440 GTAAACCGTGACTCTTCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058874 ENSRNOT00000091019 1 1 1 60 7 139421219 139421238 TGTACTCTCCTGCTAGAACC 58 139421260 139421279 CTTGTGTTACATGCGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051786 ENSRNOT00000083260 3 1 1 60 4 17801338 17801356 CGTTCTCCTGCTAGAACCT 59 17801376 17801398 ACTACCCTACATTCCTACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056247 ENSRNOT00000083070 2 1 1 60 18 40542274 40542292 TCGGTCAAGGGTATACGAG 58 40542315 40542334 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000051492 ENSRNOT00000083318 3 1 1 60 18 28355452 28355471 GTATTGCATCCCTGAGAGTG 58 28355493 28355512 GTTCGCACCTAGACTAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060859 ENSRNOT00000091433 2 1 1 60 4 23688768 23688788 GTGGTATTGTAAGCCTAACCT 58 23688728 23688747 CTGTGGTTCATGCATAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051509 ENSRNOT00000085425 2 1 1 60 X 137025263 137025283 GGTATGTTCCTCCTGAAACTG 59 137025301 137025323 CTGGTCTATTCTGGAAGGTAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034597 ENSRNOT00000052720 1 1 1 60 18 27673150 27673168 CCCGATCTCGTCTGATCTC 59 27673108 27673127 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062791.1 ENSRNOG00000045939 ENSRNOT00000074611 2 1 1 108 6 8601111 8601133 CCTCTTCTGTACTGAATGATGTC 59 8601200 8601219 GGAGGTAAAGAGTAGCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055590 ENSRNOT00000084475 1 1 1 60 10 74738926 74738944 CTTATCCATTGCACTCCGG 58 74738968 74738986 TCAAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058763 ENSRNOT00000083080 3 1 1 80 X 119811288 119811306 GCTCACTTCAGCAGTACAC 59 119811349 119811368 TAACATGTCATCCTTGCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.1 ENSRNOG00000051662 ENSRNOT00000073098 2 1 1 99 X 133954863 133954882 AATGGCAACCAACAGATTGG 60 133954781 133954802 TCCCTGTGGTCTAACTTGAG 59 Novel Rattus norvegicus 81 AABR07060971.1 ENSRNOG00000054428 ENSRNOT00000077412 1 1 1 80 4 102068588 102068973 CTGGATCCAGGAAACCAGAG 60 102069015 102069034 GAGACTGATTGTCCAATGGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054908 ENSRNOT00000088382 1 1 1 60 6 2876449 2876469 CTCTGTGCTCTATCCATAAGG 58 2876409 2876429 CACTTGACTGAAAGACTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 3 1 1 60 10 28192462 28192480 CCACTCCCTGTTAGATCCC 59 28192503 28192524 CTTGATTCAAATGGTGAGTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056912 ENSRNOT00000091181 3 1 1 60 15 35396894 35396914 CACATGTACATCAGTAGGTGG 58 35396935 35396954 GTCAGAACAGTGAGTGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052210 ENSRNOT00000081490 3 1 1 60 20 43797894 43797912 TTGCCTCAGTAGGTGACAG 59 43797936 43797954 TTCACAGGTGAGAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 2 1 1 120 4 164253018 164253036 CTAAGGAGACTCAAAGGCC 57 164249769 164250650 ATGTTTGTCACCAACATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060446 ENSRNOT00000078865 3 1 1 60 15 104930258 104930280 GATACAGAGAAGATTAGCATGGC 59 104930300 104930318 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 2 1 1 64 8 53903710 53903734 CAGGATCTATCTATGGACAAGAG 58 53903758 53903776 CGTTAAGCTGGGAATTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 LOC685321 ENSRNOG00000058976 ENSRNOT00000091891 1 1 1 101 10 14668351 14668553 CATGGCCTCTGTATCTGTC 57 14668618 14668636 TAGATTCTCAGGCTGACCT 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000054701 ENSRNOT00000079728 3 1 1 60 19 45819047 45819065 CATTGCTTTCCAGACATGC 58 45819086 45819107 TATGTAGCTGAGTTTCTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.2 ENSRNOG00000056126 ENSRNOT00000081820 1 1 1 84 5 58218020 58218042 CAAAGGGTATCATAATGCCAC 57 58217956 58217975 TGGACTTGTTCACATTTGGT 58 Novel Rattus norvegicus 81 AC115273.1 ENSRNOG00000048185 ENSRNOT00000070965 3 1 1 69 19 56088735 56088753 CTTCTCTGTGTAGCCCTGG 60 56088786 56088804 GGATCTCTGAGTCTGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061749 ENSRNOT00000084159 2 1 1 60 18 15264993 15265014 ATTATCAGCAGGTTTATGCCAG 59 15264954 15264972 CAGAGTGGTGAGGAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061749 ENSRNOT00000084159 3 1 1 60 18 15264993 15265013 TTATCAGCAGGTTTATGCCAG 59 15264953 15264971 ACAGAGTGGTGAGGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000057533 ENSRNOT00000084424 2 1 1 60 18 25475144 25475162 TGCACACTATTAAAGCCCA 57 25475102 25475121 TCCGACATTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032348.1 ENSRNOG00000049472 ENSRNOT00000075782 1 1 1 60 18 62248656 62248674 TTGACCTCAGAGATCCACC 58 62248697 62248716 GTAGAGCACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052338 ENSRNOT00000087210 1 1 1 60 11 31093673 31093691 GCCTAAAGAGCTGTCCTCC 60 31093712 31093733 GGAAGTCACTCTATTGAAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055848 ENSRNOT00000085783 1 1 1 60 18 29382413 29382436 TGGGAGATAGTATCATCAAGAAGG 59 29382455 29382473 GCATGTCAGAAAGCGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Vault ENSRNOG00000052373 ENSRNOT00000090410 2 1 1 61 18 29647882 29647900 AGCAGGCTATGTAACGTGG 60 29647925 29647943 ACTCACCAGATAGGCAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053926 ENSRNOT00000087288 3 1 1 60 18 8605247 8605270 ATGTATCAGTAGGTACTCAGAAGG 59 8605286 8605307 CATAAGTCAGAACAATGAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107331.1 ENSRNOG00000059331 ENSRNOT00000089760 3 1 1 80 1 170080674 170080697 AGATTTCACCTCACATGCGA 60 170080738 170080758 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034799 ENSRNOT00000052922 1 1 1 60 9 64068859 64068877 ATCTCGGAAGCTAAGCAGG 59 64068817 64068835 CTCCTTGCATTTCCTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059742 ENSRNOT00000080917 1 1 1 60 5 141358966 141358988 ATACAGAGAAGACTACATGAGCC 60 141359005 141359026 TATGAACGCTTCAGATTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061325 ENSRNOT00000091256 1 1 1 60 19 43611887 43611907 ATCGTATTTCCGTCAGTAGGT 59 43611929 43611947 CAGAACACTGAGCAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072644.1 ENSRNOG00000047742 ENSRNOT00000074929 2 1 1 60 19 38207422 38207442 GACAATGCTGGTCTCAAACTC 60 38207463 38207482 TTAGTCCCAGCATTCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072644.1 ENSRNOG00000047742 ENSRNOT00000074929 3 1 1 60 19 38207423 38207442 ACAATGCTGGTCTCAAACTC 59 38207463 38207483 TTTAGTCCCAGCATTCAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061235 ENSRNOT00000086652 1 1 1 60 5 455972 455994 GCAAGGGTATATGAGTAGTTGTG 59 455934 455954 TGACCTTGATAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000031202 ENSRNOT00000078058 3 1 1 80 1 169494033 169494053 TCAGGATATGAAAGGCATGCT 60 169493464 169493730 GCATGTAGATTCATATGAACCCAG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061297 ENSRNOT00000078855 3 1 1 60 19 22477036 22477054 GGAGTTCTGGGCTGTAGTG 60 22477076 22477096 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056974 ENSRNOT00000081114 3 1 1 60 5 65846401 65846421 TGTAAGTAGGTGGCAGAAAGG 60 65846361 65846382 TCTAATCGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056081 ENSRNOT00000077538 3 1 1 60 18 8703265 8703285 ACTCACTAGAACCTCTAAGCA 58 8703225 8703243 AGCCTTAACCACTTTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056824 ENSRNOT00000090116 2 1 1 60 19 22568578 22568597 CTTGAGCATCTGTTACCAGG 58 22568619 22568638 GAGGGAACTTTCACCTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046669.1 ENSRNOG00000051429 ENSRNOT00000082787 3 1 1 70 5 1507143 1507161 TGATGGAAGTCAACAGCTG 58 1507196 1507214 AGTCTTCTCAACCCAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA36 ENSRNOG00000058685 ENSRNOT00000086075 1 1 1 60 3 138456632 138456651 CTTGGTTCAGAGCAACTTCC 59 138456673 138456692 TCAGCCAATTTCAATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126530.1 ENSRNOG00000047101 ENSRNOT00000071596 1 1 1 60 18 28205269 28205289 GAAGAAGGAAGGAGGGATGAG 60 28205311 28205329 AGAGGATGATGGCACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126530.1 ENSRNOG00000047101 ENSRNOT00000071596 2 1 1 62 18 28205267 28205285 GAGAAGAAGGAAGGAGGGA 58 28205311 28205329 AGAGGATGATGGCACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054799 ENSRNOT00000090112 1 1 1 61 18 71041153 71041177 GATACAGAGAAGATTAACATGGTCC 59 71041116 71041136 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053169 ENSRNOT00000088964 2 1 1 60 11 55662760 55662778 GAGAAGTTTAGCATGGCCC 59 55662800 55662820 AATATGGAATGTTTCCGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061161 ENSRNOT00000083077 2 1 1 60 9 57503497 57503516 GAGTTGGAACATGAGCTTGC 60 57503456 57503475 AGGAACTGCAATACCAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065115.1 ENSRNOG00000048218 ENSRNOT00000075152 2 1 1 69 6 110511752 110511770 GAGATCCAGCTGTAAGGCA 59 110511803 110511821 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051886 ENSRNOT00000079281 1 1 1 60 5 82805209 82805227 GAAGATTAGCATGGGCCCT 60 82805250 82805269 GTTCTATGGAACGCTTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061864 ENSRNOT00000082834 2 1 1 72 4 123261572 123261591 AAAGTTCAAAGTTCGCAGAG 57 123261519 123261539 TCATTGAGATGTTCCTAAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065043.1 ENSRNOG00000056556 ENSRNOT00000089907 2 1 1 60 6 105394676 105394695 CTTCTAGCCTCCAGAGTCAG 59 105394635 105394657 CTACAATCTAGATGGCTTCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065043.1 ENSRNOG00000056556 ENSRNOT00000089907 3 1 1 60 6 105394678 105394697 GACTTCTAGCCTCCAGAGTC 59 105394637 105394657 ACAATCTAGATGGCTTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360355 ENSRNOG00000051726 ENSRNOT00000080172 3 1 1 96 X 155416758 155416948 GGTGATCAAACTGTACAGGTC 59 155417004 155417024 TCCACATAGGAATGGTATGGT 58 Novel Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 2 1 1 89 1 169279913 169279931 CGTGTCTTTCTCCACACTG 59 169279841 169279860 AACATCTGAGTCAAGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055363 ENSRNOT00000088847 2 1 1 60 6 47586833 47586852 CCCTAGAGGAGTTACAGGTG 59 47586875 47586893 CTCTGCCATCTACAGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055363 ENSRNOT00000088847 3 1 1 60 6 47586834 47586854 CCTAGAGGAGTTACAGGTGTG 59 47586875 47586894 TCTCTGCCATCTACAGAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053839 ENSRNOT00000084683 2 1 1 60 6 133821532 133821550 GGTGATGAGATCTGGTGGT 59 133821572 133821592 CAGATATCTGGATACTTGGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055482.1 ENSRNOG00000048108 ENSRNOT00000072656 2 1 1 81 7 4048012 4048080 CCACCTGTTCTTACATCAACC 59 4048120 4048141 GCAATTGATGTCATCAGAACTG 58 Novel Rattus norvegicus 81 AABR07057302.1 ENSRNOG00000040372 ENSRNOT00000062125 2 1 1 62 7 65243026 65243044 GGATTAATGACCAGCTGGG 58 65242982 65243000 ATTAATGGCTGGCTGGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056817.1 ENSRNOG00000056010 ENSRNOT00000086104 2 1 1 80 7 42368827 42368850 GAGATTTCACCTCACATGCG 59 42368766 42368785 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052504 ENSRNOT00000078492 3 1 1 60 7 50726340 50726358 CGCATGCTTCATCCAAGAC 60 50726298 50726317 TCATGACCAGAGATTGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112440.2 ENSRNOG00000058234 ENSRNOT00000084680 3 1 1 76 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370601 93370624 GGATCAGAACTTGACTATCTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056109 ENSRNOT00000086079 3 1 1 60 11 63981480 63981501 ATACAGAGAAGATTAGCATGGC 58 63981441 63981460 TGGAAGCTTCACAAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065154.1 ENSRNOG00000036501 ENSRNOT00000054609 1 1 1 60 6 111845949 111845972 CTGTATAAGAACTTCAAGCCTCAG 59 111845912 111845930 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050366 ENSRNOT00000072740 3 1 1 61 7 116076540 116076559 TCTACAGCGATACCACACTG 59 116076498 116076517 AGCTCTGTTTAGCTTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056621.1 ENSRNOG00000041450 ENSRNOT00000063203 2 1 1 70 7 32983215 32983233 TATGTGGACTCTAGCTGCC 59 32983163 32983181 CATGTCTACACTGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033318.1 ENSRNOG00000059691 ENSRNOT00000080073 1 1 1 80 11 17281764 17281786 AGATTTCACCTCACATGCG 58 17281702 17281721 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000048338 ENSRNOT00000062639 2 1 1 60 9 30067751 30067769 CAATCTCGTCTGATCTCGG 58 30067791 30067811 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052417 ENSRNOT00000083771 2 1 1 60 4 12884160 12884178 CTGTGTCACTGTGCTTCTG 59 12884118 12884136 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052171 ENSRNOT00000079301 2 1 1 76 6 137908014 137908033 CAATGAGGTTTATCCGAGGC 59 137907957 137907975 GTTCCTTTGTTGTGGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027387.1 ENSRNOG00000041434 ENSRNOT00000063187 3 1 1 70 17 27700537 27700556 CAGATCTCTGTGAGTTCGAG 58 27700589 27700607 TTTCTGTGTAGCCTTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058014 ENSRNOT00000089239 2 1 1 60 4 158424248 158424269 CTCAAATTGGAATGACACAGAG 58 158424289 158424308 ATCTGCGTGTCATCTTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033465.1 ENSRNOG00000055484 ENSRNOT00000084837 3 1 1 115 11 22852251 22852272 GTATTACCTCAACCAGGGC 58 22852348 22852369 GTCTTGAGTATTTGTCATCTGG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000060314 ENSRNOT00000092140 1 1 1 60 9 58970442 58970463 CTATGCATTTGGTGGATAAGGG 59 58970481 58970502 CTCTTGACTGAAGAGTAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057046 ENSRNOT00000077843 3 1 1 60 17 28893319 28893338 TTACAGGTATGTTTGCTGCA 58 28893278 28893296 ATAGCCTCACTCCACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057268 ENSRNOT00000088953 3 1 1 62 17 43017112 43017131 TGTCGCTGCTATGTAATGTG 59 43017156 43017174 CTGTTCACAGGACAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045251 ENSRNOT00000070518 1 1 1 60 7 64958038 64958056 CTGAAGCAACAAGCACCAG 60 64957996 64958015 CTTAGCTTCTGGCTCAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041728 ENSRNOT00000063481 1 1 1 60 7 15055543 15055565 CTGAATGTACCCAATCTCATCTG 59 15055505 15055523 CTCCAAGTACTAACCAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054599 ENSRNOT00000085128 1 1 1 60 7 78697940 78697962 GGTGTTCTTATATCAGTCAAGGG 59 78697979 78698000 ATCCAGCTCAGATAAACAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067805.1 ENSRNOG00000021406 ENSRNOT00000029708 2 1 1 60 9 64704410 64704431 TCTGAGATAGAATACTCTGCCA 58 64704371 64704390 TATTGCCACTGTAGTGACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000060638 ENSRNOT00000081633 1 1 1 60 7 121202496 121202520 GGAATGTATCCATAACATGCTACAG 60 121202538 121202556 ACTGTAAGGTTGGTAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053082 ENSRNOT00000077633 1 1 1 60 10 48902770 48902788 AGGTGCCATGATCTGAAGG 60 48902808 48902830 CCAACCATTTCATATAGAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021558.1 ENSRNOG00000055673 ENSRNOT00000088425 2 1 1 84 13 78328725 78328744 GGGTTGTTTCTTGCTTTCAC 58 78328652 78328672 CTCCCGGGTTCATTTATCTC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000055502 ENSRNOT00000077600 3 1 1 61 10 59447530 59447554 GGGAGACATTATAATCAAGAAGGTG 60 59447572 59447591 CCCAAGGGTCATAGTTAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000057716 ENSRNOT00000091943 1 1 1 90 16 57821917 57823181 CCTCAAACAAATATGACTCGAG 57 57823232 57823250 CCACAGGATAGAGTTGAGC 57 Novel Rattus norvegicus 81 AABR07012763.1 ENSRNOG00000057707 ENSRNOT00000086252 1 1 1 88 2 206842701 206842719 CTTGTTCCTTATGGCTGCC 59 206828479 206842649 AACCCTGTAAGCATGGGTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052147 ENSRNOT00000084444 3 1 1 60 10 66988253 66988274 CTAACACTGCAACAGTACACAG 60 66988214 66988234 ATTGTCATGTCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025757.1 ENSRNOG00000053529 ENSRNOT00000083803 1 1 1 94 16 48229197 48229217 GCACAGTTCTCAGTATACTGC 59 48229273 48229292 GAACAACTGAGCATGCCAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055808 ENSRNOT00000083797 1 1 1 60 8 6876594 6876614 AGAAAGGTTACCTATGTGCTC 58 6876554 6876575 TAGGCTACTAAACATTCAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068694.1 ENSRNOG00000032822 ENSRNOT00000056378 3 1 1 60 9 114731792 114731810 AAGTCCAAGAACCACACCA 59 114731750 114731770 TCTTGATACCATTTCTGTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000073764,ENSRNOT00000064626 1 2 2 66 10 87819560 87819578 CTTGCTGTGAAACAAGCTG 58 87819608 87819626 CTGCAGCCAATGATCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052405.1 ENSRNOG00000053222 ENSRNOT00000088405 3 1 1 171 3 51890591 51890612 TCTCTTTGTCTCTGTCTTTCTC 58 51508621 51663635 GGATGATGACAGAGACAGAC 58 Novel Rattus norvegicus 81 AABR07054716.2 ENSRNOG00000053380 ENSRNOT00000086910 3 1 1 80 3 167442588 167442609 GAATCCTTCTCAGAAGAGTCTC 58 167442648 167442871 TCCCAAATGTAGCCTATAGCA 59 Novel Rattus norvegicus 81 RGD1566225 ENSRNOG00000055742 ENSRNOT00000082227 1 1 1 60 X 137197566 137197585 AAAGAAGTATGAAGCCCTGG 58 137197607 137197626 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052830 ENSRNOT00000088511 1 1 1 60 8 118440379 118440399 GACCTAGGAGTTGGAATAGGA 58 118440339 118440359 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054116 ENSRNOT00000089813 1 1 1 60 3 156985115 156985133 TGTGTCACATGTGCATCAG 59 156985155 156985175 ACACGAGAGTGTAGACATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013200.1 ENSRNOG00000030491 ENSRNOT00000042173 3 1 1 60 2 226826306 226826325 GAGAGGGAAGTTCACTAGCA 59 226826348 226826366 ATCCACAACGGGTACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057333.1 ENSRNOG00000061578 ENSRNOT00000058504 2 1 1 80 7 65800166 65800188 TCTGGAATAACAAACCCAGGA 59 65800227 65800248 TGAGTTCAGGGATAGTGATTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053604 ENSRNOT00000082382 1 1 1 60 8 71935950 71935970 TTGGTTAAAGATGGCTTTCCC 59 71935989 71936010 TGCTCATATACCTTTGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052517 ENSRNOT00000081691 2 1 1 80 13 45222041 45222059 TCTTCATGGGAACCTGGTG 59 45222103 45222121 CAACTCATAAGGGCAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010682.1 ENSRNOG00000047765 ENSRNOT00000072356 2 1 1 80 2 147207917 147207940 GAGATTTCACCTCACATGCG 59 147207982 147208001 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC107580.4 ENSRNOG00000059412 ENSRNOT00000082045 2 1 1 60 X 123807912 123807932 CTAAACTTGGAAAGCATCGAG 57 123807952 123807972 GGGTCTTCTAGGAAATCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044601 ENSRNOT00000069868 2 1 1 60 8 111941327 111941345 CTGAATGTGCCTGATCTCG 58 111941285 111941304 CTCCCATCCAAGTCCTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053734 ENSRNOT00000086034 2 1 1 60 8 75469111 75469132 GTAGAACACTTACTGTACAGCC 59 75469150 75469171 ATTGCTTTGTGATGAGATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052755.1 ENSRNOG00000009648 ENSRNOT00000012787 3 1 1 60 3 73284359 73284379 ATTTCCTACATTGGGTGTCTG 58 73284317 73284338 AATATTCAGTCAAGAGCAGGGT 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD14 ENSRNOG00000060267 ENSRNOT00000080953 2 1 1 60 8 44992803 44992823 GATGAATGGTCCAAACATTCG 58 44992845 44992863 GGAAGGTAACTGCCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066144.1 ENSRNOG00000052886 ENSRNOT00000088289 1 1 1 60 9 3965764 3965782 GTCCTGGATGATCTCTGCA 59 3922105 3922125 CATTGTCTCTTTCCTCACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 1 1 1 60 9 4107420 4107524 AAAGTTTCCTGTGCCTCCT 59 4107545 4107566 AAAGTCTATAGGCCAGGAATCC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471 2 1 3 105 20 4873103 4873333 ACAATGAATGGGCTTTGCC 59 4871892 4871911 TTAGCCCACATCTAGGTGAG 59 Novel Rattus norvegicus 81 AC097575.1 ENSRNOG00000046927 ENSRNOT00000074227 1 1 1 152 12 46915144 46915162 CTCAGACACAAAGACACCC 58 46915280 46915303 GATGCTGACGTGTTGAGAG 59 Novel Rattus norvegicus 81 AABR07071661.1 ENSRNOG00000053820 ENSRNOT00000089732 1 1 1 80 8 126347040 126347058 AAGCGTACCGACTCTACAG 59 126342378 126346996 CTCTTCTGGTTCTGTCCCG 60 Novel Rattus norvegicus 81 AC114502.1 ENSRNOG00000056363 ENSRNOT00000081642 3 1 1 86 16 49518964 49520296 AGGATTTGCCTAACAAGACAC 59 49518898 49518918 CCATTGAATGGAGAGTCTTGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060155 ENSRNOT00000085774 2 1 1 60 8 17657180 17657198 AGCTGTAACATCTGACACC 57 17657221 17657240 CTAGCCAGTCAAATCATCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008016.1 ENSRNOG00000050795 ENSRNOT00000073551 1 1 1 80 2 38978747 38978770 CCAGCCTAGGAAACAAATATCC 59 38978688 38978709 CAAAGGCGTAATGTATCATGTC 58 Novel Rattus norvegicus 81 AABR07070926.1 ENSRNOG00000054875 ENSRNOT00000080817 2 1 1 80 8 92224992 92225014 CTACAAATCCAGCACTAAGGA 58 92224932 92224952 AGTTTCTTGCTTCTTCTAGGG 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000055321 ENSRNOT00000088929 3 1 1 60 8 75832519 75832537 AGCACTCGTAAGCATATGG 57 75832557 75832579 TTTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053779 ENSRNOT00000078942 1 1 1 60 8 51351552 51351572 AACACAGAGAAGATTAGCACG 59 51351512 51351530 AAACGGTCCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053779 ENSRNOT00000078942 3 1 1 62 8 51351553 51351574 ACAACACAGAGAAGATTAGCAC 59 51351512 51351530 AAACGGTCCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008255.1 ENSRNOG00000054421 ENSRNOT00000085374 2 1 1 156 2 49682759 49682777 TACACTTGCTGGTAACCGG 60 49682619 49682638 ATAATTGATGGAGGGTTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045487.1 ENSRNOG00000037628 ENSRNOT00000057081 1 1 1 60 20 48980204 48980222 ATTCCCTGGTGAGGAATGC 60 48980246 48980264 AGAGACTTTCCCAGATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 3 1 1 90 20 47733353 47733372 GAACTTAGGGATATCGCTGG 58 47733281 47733302 GGGCAAGAATACCTACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.1 ENSRNOG00000056187 ENSRNOT00000090015 2 1 1 101 20 47779809 47779828 ATGCAGAAATACATGCACAC 57 47779890 47779910 TGTGCATGTATGTGGTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.1 ENSRNOG00000056187 ENSRNOT00000090015 3 1 1 103 20 47779807 47779828 CAATGCAGAAATACATGCACAC 59 47779890 47779910 TGTGCATGTATGTGGTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115322.4 ENSRNOG00000060449 ENSRNOT00000084027 1 1 1 107 3 175629394 175629412 GTTTGTGGACCTGTACGTG 59 175629584 175629751 GTACTCCTGTCAACCTCGG 60 Novel Rattus norvegicus 81 AABR07024795.1 ENSRNOG00000028958 ENSRNOT00000047499 3 1 1 60 16 16950086 16950104 CTTCAACAGCAACTCCCAC 59 16950128 16950146 GTCATTGAGAGCAATGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053407 ENSRNOT00000079708 3 1 1 60 3 114545478 114545497 TAGCCAATGAGGTTTATCCG 58 114545437 114545455 AACACCAATGGCTTATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053667.1 ENSRNOG00000057409 ENSRNOT00000086998 3 1 1 86 3 119372670 119372688 CCACTGAGCCATCTTTCCA 60 119372602 119372621 CTACACTCTGAACCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD12 ENSRNOG00000054081 ENSRNOT00000077844 2 1 1 60 3 163817254 163817273 TGGTGAAGCTGATGATACCA 59 163817295 163817314 AGCATATGAGATCAACAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026424.1 ENSRNOG00000038106 ENSRNOT00000019033 3 1 1 60 16 75874367 75874389 TTATAGAGCGATACAAGGGTGAG 60 75874329 75874348 ACAAGGAACTTGGTCTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056609 ENSRNOT00000079958 1 1 1 60 3 177005425 177005448 CTTGCCTGAATAGTTGTGATAGTG 60 177005467 177005485 TTGGTTGTCCCACTTCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 3 1 1 66 18 2189092 2195793 AGTAGGTGAAGAGGTTGAGTG 59 2195821 2195839 AACTCAGAGCAGTTCTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07046732.1 ENSRNOG00000058240 ENSRNOT00000079313 1 1 1 93 5 3951132 3951150 AAGTGAACTGGTAGCTGGG 59 3945648 3951077 GATGTTCCTGCAAGATCTCAC 59 Novel Rattus norvegicus 81 AABR07062664.1 ENSRNOG00000056230 ENSRNOT00000088290 3 1 1 102 6 2399610 2399940 ATACCTCAGGCTTCACACG 60 2400005 2400024 GATGGAGCCTTTGAGAAGTG 59 Novel Rattus norvegicus 81 AABR07031328.1 ENSRNOG00000061291 ENSRNOT00000087124 2 1 1 80 18 9430267 9433032 TAATTGTCTCGAGGTCCGG 59 9430205 9430225 AGAAACTGCCATCATGTTGTG 60 Novel Rattus norvegicus 81 AABR07031404.1 ENSRNOG00000061117 ENSRNOT00000081412 2 1 1 101 18 12390174 12390193 TTTCCAGTCATGTGGAAGAG 58 12384196 12390110 TGTTCTTAAGGTTCCCGTC 57 Novel Rattus norvegicus 81 AABR07015015.1 ENSRNOG00000056503 ENSRNOT00000085232 2 1 1 96 14 45395637 45396216 GCAAAGGAACAGAGGTCTC 58 45395559 45395577 GAGAGGGTGTAAATGCCCT 59 Novel Rattus norvegicus 81 AABR07015040.1 ENSRNOG00000056778 ENSRNOT00000084119 3 1 1 60 14 46286652 46286672 CACAAACAACCGACAGAAGAG 60 46286799 46286818 CGGTCTGATCTTCAGAAACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047174.2 ENSRNOG00000057656 ENSRNOT00000090094 2 1 1 83 5 22204372 22205539 TGGAACCCAGATTGAACTG 57 22205586 22205604 TATTGGTTGCGCAAATTGG 58 Novel Rattus norvegicus 81 AC128394.3 ENSRNOG00000059861 ENSRNOT00000087902 3 1 1 118 1 12777072 12798729 TCTAACCTTGAAGCCACGA 59 12776972 12776991 CTCACCTTCAATACACAGGG 58 Novel Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000081716 3 1 2 84 1 13371503 13381756 CTCCAGGAGAAATAGAAGAAAGTC 59 13371442 13371461 GTGGAAACTCTCCACTTCCA 60 Novel Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000090103 2 1 2 81 1 13380375 13381756 CTCCAGGAGGAGTGAAACG 60 13380312 13380332 ATCAGTTAACTGTTTCCCGGA 60 Novel Rattus norvegicus 81 AABR07030180.1 ENSRNOG00000055718 ENSRNOT00000090718 3 1 1 81 10 74152533 74153631 TTATTTCAGCTGGAAAGCCA 58 74152471 74152489 GTATCCCAGAGCTGAACTC 57 Novel Rattus norvegicus 81 AC108312.2 ENSRNOG00000061022 ENSRNOT00000082693 3 1 1 81 14 80461635 80468161 GTGTGCAAATAAAGCACGG 58 80461572 80461593 CTGCTCTAACACAAGTTAAACC 58 Novel Rattus norvegicus 81 AABR07015846.1 ENSRNOG00000060138 ENSRNOT00000087729 2 1 1 81 14 80623859 80623877 GAAGAGGAGAAGCAGAAGC 58 80622961 80623816 CAGACATTTCTTCCATCTCCC 59 Novel Rattus norvegicus 81 AABR07061328.1 ENSRNOG00000056916 ENSRNOT00000089373 3 1 1 88 4 116834597 116834616 ATTAAGGACAGGAGGACCAG 59 116831636 116834546 GAACACTGAAGATGGCCTG 59 Novel Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 1 1 1 65 14 82288693 82289269 GTGTAAAGTCCCTCGAGTC 57 82288646 82288664 ATACCTGAGGTCTTGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030366.1 ENSRNOG00000060524 ENSRNOT00000088573 3 1 1 91 10 82739591 82742964 AAATGTACCAGGCCTTCCA 59 82739518 82739537 TGATACGGTGGTCTTGTCTC 59 Novel Rattus norvegicus 81 AABR07048321.2 ENSRNOG00000061187 ENSRNOT00000080587 2 1 1 80 5 72995672 72995690 ATGGGTCTGGAAATCAGGG 59 72995835 72995853 CCCAGGTTGGTAGCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048342.1 ENSRNOG00000051572 ENSRNOT00000083131 1 1 1 91 5 73803845 73805013 TAGAACTCTGGCAGGAAAGC 60 73803773 73803791 CTAGGGAAGAGCTCACCTG 59 Novel Rattus norvegicus 81 AABR07061408.1 ENSRNOG00000055287 ENSRNOT00000081184 3 1 1 80 4 122050803 122050823 TTGAAGCCTTTACAGTTGCTC 59 122048656 122050763 CTGATCAGTTCTTTCCCTGGA 60 Novel Rattus norvegicus 81 AABR07016558.2 ENSRNOG00000055797 ENSRNOT00000087831 1 1 1 117 14 103712519 103712537 TACATTATCGCTGAGGCCC 59 103712817 103712838 CTCTCACAATTTCTCTTCACAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.3 ENSRNOG00000052645 ENSRNOT00000089357 1 1 1 80 10 93194079 93194098 GGAGACATGGGAATAGAGCT 59 93194138 93194968 ATAGACCTTTCCATCATCAACG 58 Novel Rattus norvegicus 81 AABR07048878.2 ENSRNOG00000054839 ENSRNOT00000080480 2 1 1 90 5 95450126 95451413 TTTATCCTCAACCAACTGTGG 58 95450056 95450075 CTGTAAACTCTGTGGCTCTG 58 Novel Rattus norvegicus 81 AABR07016674.1 ENSRNOG00000055024 ENSRNOT00000082749 2 1 1 105 14 110103163 110234050 ACTTATCACGTGGGAAGCT 59 110103076 110103094 ATCAGAGACCTGTGCTGTC 59 Novel Rattus norvegicus 81 AABR07061807.2 ENSRNOG00000052522 ENSRNOT00000077582 1 1 1 101 4 146300251 146300269 TCCATAGGAAGACACAGCA 58 146293042 146300090 GGGAAGAGAATCTGTTAAGATACC 59 Novel Rattus norvegicus 81 AC094236.1 ENSRNOG00000058836 ENSRNOT00000091241 1 1 1 81 4 148628670 148629000 ACCACCTTCAGAAAGGTCTG 60 148628608 148628627 AGACTTGGCTGTCAGTTCTC 60 Novel Rattus norvegicus 81 AC142421.2 ENSRNOG00000061518 ENSRNOT00000081097 1 1 1 80 1 32240541 32240562 ACTAGAGATAAGATGCTGGCAC 60 32240602 32244059 CAGAGAAACCTAGGCTCTCG 60 Novel Rattus norvegicus 81 AABR07062026.1 ENSRNOG00000054974 ENSRNOT00000090715 1 1 1 60 4 156727580 156727598 ATTTCAGAAGCTGCAGGAG 58 156736835 156736854 CATGTTGGCTTTAGCATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016865.1 ENSRNOG00000051560 ENSRNOT00000086712 1 1 1 65 15 2549176 2549195 TGAGGAAAGATCCCTATGGA 57 2549643 2549663 GGAGGATATACAGGATGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030690.1 ENSRNOG00000059096 ENSRNOT00000089444 3 1 1 61 10 99771484 99771502 CTTAGATGTTCAGCCCTGG 58 99731179 99731197 GGCCAGTTGTCAAATTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001018.3 ENSRNOG00000055826 ENSRNOT00000084492 1 1 1 80 1 33722232 33722252 CAACAGCAAGATTTCCTTGAC 58 33722293 33723030 GGATTCTCTGTTCATGTGGT 58 Novel Rattus norvegicus 81 AABR07017103.1 ENSRNOG00000054415 ENSRNOT00000091892 3 1 1 80 15 10966747 10969486 CCAATGACTGGGTACCAGG 60 10969527 10969548 AAGTGTTTGTCCATCTATCAGC 59 Novel Rattus norvegicus 81 AABR07049353.2 ENSRNOG00000059390 ENSRNOT00000085331 3 1 1 80 5 118187845 118187864 GAACCAAGGATCAGACTCAC 58 118187905 118212945 GAATTTGATGCTCATCTGGAC 57 Novel Rattus norvegicus 81 AABR07062069.1 ENSRNOG00000059103 ENSRNOT00000077879 2 1 1 76 4 160419540 160419558 CATTCTGCAGGGATAGCCT 59 160421875 160421893 AGATGACCTCACTGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030796.1 ENSRNOG00000059563 ENSRNOT00000085850 2 1 1 104 10 104902303 104902321 CTTCAGCTCTGCTCCTCTC 60 104901776 104901794 CATACTGACACCACACGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017189.1 ENSRNOG00000058519 ENSRNOT00000089717 3 1 1 83 15 16637950 16638841 GTCTACAGTGATGCTTTCCT 57 16637886 16637905 AGGTGAACATCATCTTCCTC 57 Novel Rattus norvegicus 81 AABR07062112.2 ENSRNOG00000058933 ENSRNOT00000084779 1 1 1 72 4 161527282 161527300 TTCACAGAGGCTCTTTCCC 59 161519855 161519873 CTTCGAAGTTTCAGCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017208.2 ENSRNOG00000061006 ENSRNOT00000090768 1 1 1 80 15 17933621 17933644 ACCTCCGTTAAAGAGATAGATGAG 60 17933679 17937141 GAAGATGAAATTCTCTGCCTTCC 60 Novel Rattus norvegicus 81 AABR07030914.1 ENSRNOG00000061432 ENSRNOT00000091969 2 1 1 128 10 109098801 109098819 CCAGTGAGCTATGTGGGAG 60 109097702 109098709 AGATCTGTCACGTGTCTGC 60 Novel Rattus norvegicus 81 AABR07017269.1 ENSRNOG00000061896 ENSRNOT00000090531 2 1 1 80 15 20432749 20435341 GCCAAGAACCAACAGTCTG 59 20435382 20435403 TCCTCATTTCATAAAGTAGGCG 58 Novel Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000080624 1 1 2 80 1 42230078 42230096 AGCTAGTCCACCTTGAGAG 58 42230137 42232795 TCTGAGTCTTTAGCTTTCTCTG 58 Novel Rattus norvegicus 81 AABR07017528.1 ENSRNOG00000061188 ENSRNOT00000080361 2 1 1 60 15 25408846 25408865 ACGGCTTTATTATGCACGTG 59 25408888 25412238 CAACGGTGTGAAGTAGCTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07062833.1 ENSRNOG00000053723 ENSRNOT00000084382 2 1 1 80 6 11094353 11094783 TACTCTGCAACATCTACTTGAG 58 11094824 11094842 AAGCCAGGCTGTTAATCTG 58 Novel Rattus norvegicus 81 AABR07017868.3 ENSRNOG00000055476 ENSRNOT00000080194 3 1 1 87 15 32020045 32020063 TCATGCAGAGGGACATGTG 60 32020114 32020353 TGGGCCACATTACATCCAG 60 Novel Rattus norvegicus 81 AC097037.4 ENSRNOG00000059192 ENSRNOT00000090409 2 1 1 81 15 32963081 32963099 GCTGTCAACAGTTGATGGA 58 32963143 32966058 CATTTCAAATCGCTGGACAC 58 Novel Rattus norvegicus 81 AABR07031788.1 ENSRNOG00000057104 ENSRNOT00000082887 2 1 1 92 18 34899239 34899257 GTGTCTAGAGGCAGGAAGG 59 34899313 34911961 ACTGTTGCATTTCATTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063350.1 ENSRNOG00000061357 ENSRNOT00000090494 1 1 1 105 6 29862760 29862858 CAGACAGCAGATGTTGCTG 59 29862673 29862692 AAAGTCAGAAAGGCCTTTGG 59 Novel Rattus norvegicus 81 AABR07063350.1 ENSRNOG00000061357 ENSRNOT00000090494 2 1 1 111 6 29862760 29862858 CAGACAGCAGATGTTGCTG 59 29862667 29862685 TTGCCCAAAGTCAGAAAGG 58 Novel Rattus norvegicus 81 AC132627.2 ENSRNOG00000058849 ENSRNOT00000081464 2 1 1 61 5 147710165 147710183 GAAGACTCACTGGACTCCC 59 147706478 147706496 ATGACTACGACAGACTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063558.1 ENSRNOG00000056987 ENSRNOT00000091189 3 1 1 61 6 35293678 35309656 CATTCATGAGATTCTGAATCGC 58 35309677 35309696 CATAGCTCAGTACTCACTGG 57 Novel DesignRelaxed Rattus norvegicus 81 AC111678.1 ENSRNOG00000055327 ENSRNOT00000079007 3 1 1 93 18 52053244 52053267 CTCTTACTGGCAGTGAAATTACAG 60 52053318 52125305 TTCGATACAGAAGCTTCCGT 59 Novel Rattus norvegicus 81 AABR07072602.1 ENSRNOG00000052190 ENSRNOT00000087290 1 1 1 80 18 53252762 53263263 TACTGTGGACAACCTGTCTG 59 53252701 53252719 ATAAACACAAGCACAGCGG 59 Novel Rattus norvegicus 81 AC107505.2 ENSRNOG00000056691 ENSRNOT00000077835 2 1 1 80 18 53430404 53431329 AAACCATCCTACTGGTCCC 59 53430342 53430360 CTCATTTGCCATGACCTGC 60 Novel Rattus norvegicus 81 AABR07018269.2 ENSRNOG00000052066 ENSRNOT00000085504 3 1 1 133 15 49619457 49619476 CCTTCTTTCTCCAGTTCCAG 58 49611574 49614031 CAAATGTTTCCTTTGGCTCTG 58 Novel Rattus norvegicus 81 AABR07063642.1 ENSRNOG00000059067 ENSRNOT00000088515 3 1 1 99 6 39128152 39128172 CAATGTCTGGGAATGGTTTGG 60 39128231 39134838 CAAAGGTACCTGGCTTATCCA 60 Novel Rattus norvegicus 81 AABR07032261.5 ENSRNOG00000057973 ENSRNOT00000088490 1 1 1 60 18 57544351 57544369 TCCTCTGGGAATGGAAAGG 59 57545945 57545963 CTGGTGCAGTTCCTTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063652.1 ENSRNOG00000053504 ENSRNOT00000087716 1 1 1 81 6 39879463 39879483 CATGGGTTTGTCTTCATTCAG 58 39863868 39863887 AGATTGTGTAGTTCTGTCCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032267.1 ENSRNOG00000058761 ENSRNOT00000083384 1 1 1 88 18 58323855 58323876 CCCACATAAACAAATGATCTGG 58 58320391 58323807 GGCGTATCAAATTTCCTGGA 58 Novel Rattus norvegicus 81 AABR07018349.1 ENSRNOG00000058454 ENSRNOT00000079047 2 1 1 88 15 53495859 53495877 ATCCAGACTCCTCAAGGGA 59 53495289 53495810 CTACTACCCATTAGAGTGGTGG 60 Novel Rattus norvegicus 81 AABR07050423.1 ENSRNOG00000054302 ENSRNOT00000085172 3 1 1 97 5 164359929 164359947 TATGCTCAGCAAATCTGCG 59 164356233 164359869 CGGATTTGAGAACTGCATCC 59 Novel Rattus norvegicus 81 AABR07063674.1 ENSRNOG00000058570 ENSRNOT00000085751 1 1 1 84 6 41275320 41275338 GACTTCTGCAACACAAGGA 58 41275383 41275904 CTTTGTTCTTCCTTGTGAATCC 58 Novel Rattus norvegicus 81 AABR07063674.1 ENSRNOG00000058570 ENSRNOT00000085751 2 1 1 88 6 41275320 41275338 GACTTCTGCAACACAAGGA 58 41275388 41275908 TGGTCTTTGTTCTTCCTTGTG 59 Novel Rattus norvegicus 81 AABR07063682.1 ENSRNOG00000060065 ENSRNOT00000078200 2 1 1 80 6 41773214 41773233 TCGCTGGTACTTAGGAAGTG 59 41751476 41773171 CCCTTCACATATGCTCAGC 58 Novel Rattus norvegicus 81 AABR07050484.1 ENSRNOG00000061404 ENSRNOT00000092120 1 1 1 98 5 166894649 166894667 ACTCCTAGTCTGTGCTGTG 59 166894729 166896783 GGTAATGCCAAACCGTCTC 59 Novel Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 2 1 1 66 18 67748230 67748250 ATGTCACTCCTGTCATTTGTC 58 67695169 67748202 TCTGGACTCAAGATGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002682.1 ENSRNOG00000056832 ENSRNOT00000084874 1 1 1 80 1 80944264 80944282 GCTGCTAATGAGGGAAGAG 58 80944325 80951104 AAACGATGGAGACCTTTCTG 58 Novel Rattus norvegicus 81 AABR07002845.1 ENSRNOG00000055006 ENSRNOT00000080451 1 1 1 104 1 86803121 86803577 CCTGGAAAGTTCATCCACAG 59 86803036 86803054 TCAGTGTCCACTAGCACAG 59 Novel Rattus norvegicus 81 AABR07063873.1 ENSRNOG00000058832 ENSRNOT00000082019 1 1 1 80 6 53276084 53290413 AATGTGAGCGAATTCAAGGT 58 53276023 53276046 CATACAGTAGTGAGTGATGTTCAG 59 Novel Rattus norvegicus 81 AABR07032582.2 ENSRNOG00000055139 ENSRNOT00000088233 3 1 1 80 18 72650660 72650678 ACATGCTGTAGCTACTCCT 58 72650719 72651968 AAAGTTCAAAGAGACCCATCTG 59 Novel Rattus norvegicus 81 AABR07064048.2 ENSRNOG00000052527 ENSRNOT00000090917 1 1 1 80 6 62294035 62294053 CGAACTTCCAGTGTCTGAG 58 62294096 62309901 CCCTTTGCAACATACAAGTC 57 Novel Rattus norvegicus 81 AC114093.1 ENSRNOG00000053481 ENSRNOT00000078523 1 1 1 80 18 74778908 74787625 TACCCTATGAAACTACAGGAGAG 59 74787665 74787683 GGGTCTTGTCTTCATGCTG 59 Novel Rattus norvegicus 81 AABR07019099.1 ENSRNOG00000057030 ENSRNOT00000080719 1 1 1 81 15 89029790 89030246 TAAAGCACATTTGGGTTTGGG 60 89029729 89029753 GTCTGAGTAGATTCTCAAACTTTGG 60 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000085953 1 1 2 81 1 89675288 89675306 ATGGGAAGATCTGGACCTG 59 89675350 89682474 CTTCGTCACTCAGTGAAAGC 59 Novel Rattus norvegicus 81 AABR07032750.1 ENSRNOG00000059809 ENSRNOT00000088259 1 1 1 81 18 79660374 79660395 CGATTAATGAATCCATTGCCAC 59 79660437 79672153 CCCGTAGATGATGACCCTG 59 Novel Rattus norvegicus 81 AABR07003007.1 ENSRNOG00000060688 ENSRNOT00000084795 1 1 1 63 1 92926572 92926590 TCTTGATCCCTGACAGCAG 59 92926617 92927807 TTTCTGCTGTGGAAACTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 2 1 1 64 15 105203100 105205012 AAAGTAACGCTGACTTCGG 58 105205037 105205058 GGTATTACAAGAATCTTCAGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064635.1 ENSRNOG00000056583 ENSRNOT00000089798 2 1 1 87 6 88087807 88087825 TACAGCAACCTTCTCAGGC 60 88081238 88087759 AGGAATGGCTGTAGATAGTCTC 59 Novel Rattus norvegicus 81 AABR07051646.1 ENSRNOG00000058261 ENSRNOT00000080399 1 1 1 80 3 18653639 18654022 GCTTTGGATTCTGGGAACC 59 18654065 18654084 ACTGATTGTCCAATGGTAGC 58 Novel Rattus norvegicus 81 AABR07051813.1 ENSRNOG00000053236 ENSRNOT00000088694 2 1 1 87 3 22780928 22782957 GAATCCTACCTGGCCAGAC 60 22783008 22783026 AAAGCAGGTAAGAGGCTGG 60 Novel Rattus norvegicus 81 AABR07051813.1 ENSRNOG00000053236 ENSRNOT00000088694 3 1 1 89 3 22780928 22782957 GAATCCTACCTGGCCAGAC 60 22783010 22783028 CCAAAGCAGGTAAGAGGCT 60 Novel Rattus norvegicus 81 AABR07051882.1 ENSRNOG00000054632 ENSRNOT00000089075 1 1 1 81 3 25430599 25430620 CTTTCACTGATTTACTCATGGC 58 25429757 25430558 GATGTTTGGAGACATCAGGT 58 Novel Rattus norvegicus 81 AABR07051882.1 ENSRNOG00000054632 ENSRNOT00000089075 2 1 1 82 3 25430599 25430620 CTTTCACTGATTTACTCATGGC 58 25429756 25430557 AGATGTTTGGAGACATCAGG 57 Novel Rattus norvegicus 81 AABR07033607.1 ENSRNOG00000058541 ENSRNOT00000078276 2 1 1 107 11 29700495 29700513 CAGTTCGTGATCTACCCTG 57 29699397 29700424 AAATGGCATCTGGGAAAGG 58 Novel Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 1 1 1 67 3 30248583 30248601 ATTTCAGAGGCATCCAGGA 58 30247212 30248554 TCATTTGATATGGTTCCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 2 1 1 76 3 33949911 33949931 GGTTCAGGATGAATTCCATGC 60 33949969 33951506 CCTGATGCTCAAGAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033730.1 ENSRNOG00000055423 ENSRNOT00000083023 3 1 1 136 11 37726105 37726123 TGAGCTTGGGAAGTAGAGG 58 37711544 37726005 CTGGTTGTTTCCCATCCAC 59 Novel Rattus norvegicus 81 AABR07052195.1 ENSRNOG00000051723 ENSRNOT00000084104 3 1 1 94 3 41634434 41642437 AGGTTAAGTGGAGAGCTGG 59 41634358 41634382 CCATCTCTTTATCTCATATTCGTCC 59 Novel Rattus norvegicus 81 AABR07065261.1 ENSRNOG00000054797 ENSRNOT00000092089 2 1 1 95 6 117645870 117645889 GGTATTGACGTGTCCTTGAC 59 117651867 117651886 TCCATCACTAAGCTGTACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003380.1 ENSRNOG00000051504 ENSRNOT00000086235 1 1 1 82 1 108266046 108266064 TTCTGAGCTCCACATCTGC 60 108266106 108267273 CAGGGAAATCTTCATACACAGTG 60 Novel Rattus norvegicus 81 AABR07052263.1 ENSRNOG00000055184 ENSRNOT00000077232 1 1 1 60 3 43694954 43694972 CATCAGCCAACGAGTAGAG 58 43694996 43695014 TCAGCTTCCCAAAGACGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033836.1 ENSRNOG00000060455 ENSRNOT00000086172 1 1 1 110 11 39710273 39756284 ATGATGAAGGCGAATGCTG 59 39756358 39756376 AAAGGACAGTCCTGAGGTG 59 Novel Rattus norvegicus 81 AABR07003392.1 ENSRNOG00000061672 ENSRNOT00000084001 2 1 1 60 1 108641550 108641570 ACCCACCAAATTCACTTTGAG 59 108617885 108617905 AGCAGGATACTCTTGTGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065282.1 ENSRNOG00000052153 ENSRNOT00000081584 3 1 1 86 6 119151204 119185098 ACCACTGTGAGCTCTTCTG 59 119151136 119151155 TTTGGTGGTAAGTTGACCGA 60 Novel Rattus norvegicus 81 AABR07003418.1 ENSRNOG00000051394 ENSRNOT00000091509 2 1 1 83 1 109462471 109462489 TTCTGAGCTCCACATCTGC 60 109462533 109463699 CCAGGGAAATCTTCATACACAG 59 Novel Rattus norvegicus 81 AC098929.1 ENSRNOG00000060126 ENSRNOT00000086253 1 1 1 80 6 122728625 122729616 TTCCACAGCACCAATTACAG 59 122728564 122728587 CAATTATTTCTTCCTAGGCCAGAG 59 Novel Rattus norvegicus 81 AABR07021492.1 ENSRNOG00000056431 ENSRNOT00000089000 1 1 1 80 13 74612239 74616794 ACCACAAATACAGGTGAGC 58 74612177 74612195 TTCTCGTGGTATCCCTGAC 59 Novel Rattus norvegicus 81 AABR07003786.1 ENSRNOG00000051576 ENSRNOT00000092146 2 1 1 89 1 118322694 118324429 GCAATTAATCTACCGTGGTCAC 60 118322626 118322646 CTATAGTTCAGTCGTAGGGCA 59 Novel Rattus norvegicus 81 AABR07052549.1 ENSRNOG00000055699 ENSRNOT00000091918 2 1 1 111 3 60911854 60911872 GGGAGGAAGAGTCAGTTGG 59 60911190 60911779 GAGAGGCATCTGTTTGTGG 59 Novel Rattus norvegicus 81 AABR07052550.3 ENSRNOG00000059983 ENSRNOT00000089479 3 1 1 80 3 61120773 61120793 AACCTGAAAGAAGGCATACAG 58 61119560 61120731 GTGCCTTGTAATGGACTCC 58 Novel Rattus norvegicus 81 AABR07021612.1 ENSRNOG00000054298 ENSRNOT00000087910 2 1 1 80 13 81482881 81482899 CTCACGAAGTGACTTCCTG 58 81482941 81507646 TAGGCATCCTTAAGGACTGAG 59 Novel Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000078920 1 1 2 90 6 127193066 127199438 TACAACAGGAGGAAGTTGGA 58 127192995 127193013 CACCAGACTTGTCCATGTG 59 Novel Rattus norvegicus 81 AABR07034502.2 ENSRNOG00000060165 ENSRNOT00000083501 2 1 1 80 11 74257969 74257988 AAATTAAGCTTCGCACACTC 57 74257236 74257927 GACTGTTTGTGAAGTTCCCT 58 Novel Rattus norvegicus 81 AABR07052587.2 ENSRNOG00000053364 ENSRNOT00000087843 2 1 1 60 3 64180714 64180733 GCATTCTTATTGGCCCTACC 59 64182338 64182357 AGGAGAACCAAAGGAATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052587.2 ENSRNOG00000053364 ENSRNOT00000087843 3 1 1 60 3 64180715 64180734 CATTCTTATTGGCCCTACCT 57 64182338 64182358 AAGGAGAACCAAAGGAATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.1 ENSRNOG00000059969 ENSRNOT00000086490 3 1 1 95 13 90171083 90171412 TGTCCATTCGACAATTTAGGAG 59 90171468 90171486 CTGGCTATTGCATGCATCC 60 Novel Rattus norvegicus 81 AC117091.2 ENSRNOG00000051430 ENSRNOT00000085948 2 1 1 80 13 92264076 92264096 AAAGCAGTGACAGATGAAAGG 59 92263904 92264037 GCGTTGTACTTCCTTATAAGGT 58 Novel Rattus norvegicus 81 AABR07052686.1 ENSRNOG00000060480 ENSRNOT00000086000 2 1 1 106 3 69246656 69267730 GAGACTCCTGAGAGGTGGA 60 69246568 69246588 AACCATAATCCATTTGTGGCC 59 Novel Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 2 1 1 60 3 71664835 71666533 TGACAAATGCTGCTTTGGG 59 71666556 71666575 ACAACAACTGAAGGCTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.3 ENSRNOG00000058876 ENSRNOT00000089215 3 1 1 83 12 3208176 3245888 GTGATAAGAAAGCATGCATGAG 58 3245930 3245950 TTTCTTAAGTCCCGTGAACTG 58 Novel Rattus norvegicus 81 AABR07004241.1 ENSRNOG00000055614 ENSRNOT00000081182 3 1 1 87 1 132343962 132348771 CCATTACTCTAGGTATTGTATGAGG 58 132343899 132343918 GGTGTCTACAGCTCAATTCC 58 Novel Rattus norvegicus 81 AABR07024491.1 ENSRNOG00000055392 ENSRNOT00000083207 2 1 1 81 16 1455310 1456801 TCCTTGCCTACATAGCCTC 59 1455247 1455265 TAATGCAGCTACTCCTTGC 58 Novel Rattus norvegicus 81 AABR07024542.1 ENSRNOG00000058571 ENSRNOT00000084733 3 1 1 87 16 4439789 4439809 AGCCACTCTTAAAGAAAGCTG 59 4439857 4443037 CTTCTGACAGCTGTGAAAGC 60 Novel Rattus norvegicus 81 AABR07004482.1 ENSRNOG00000054650 ENSRNOT00000082947 3 1 1 84 1 144847522 144847848 AAAGAAAGAGTCATGGGCCA 60 144847894 144847913 ACATTCACGAAGAAGGTGGT 60 Novel Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 2 1 1 66 3 109814066 109814084 AGTCCTGCTGGGATTAGTG 59 109811961 109814036 GCAGAGACAAAGCTGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024734.1 ENSRNOG00000055616 ENSRNOT00000085284 3 1 1 85 16 13013411 13014954 GCTGTTTGTGAGGTATGCA 59 13015002 13015021 ATGTTTCCAGGAAGCTACAG 58 Novel Rattus norvegicus 81 AABR07066736.1 ENSRNOG00000053883 ENSRNOT00000077449 1 1 1 82 9 13737715 13739316 TCCGATATAAAGCTCACGGA 58 13737652 13737670 CAGAATGGAAGTCTGGGTG 58 Novel Rattus norvegicus 81 AABR07024786.1 ENSRNOG00000059262 ENSRNOT00000084434 2 1 1 80 16 16473052 16473072 CGTATTGTCTCAATGACGGTG 60 16455730 16473011 ATGTGCACAAGAATCGACAG 59 Novel Rattus norvegicus 81 AABR07035717.1 ENSRNOG00000060527 ENSRNOT00000077381 1 1 1 88 12 21370916 21373046 CATTGTCCATGCACTCAGC 60 21370846 21370864 GATCTCCTGTGTCCTCCAG 59 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000091253 1 1 2 158 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778555 21778573 TAGGACTCACCTCCAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053710.2 ENSRNOG00000056972 ENSRNOT00000092011 2 1 1 99 3 121567832 121567851 GGCCATGATGTTCATTACAG 57 121567913 121568109 AGCCATCTCCCATAGACTC 58 Novel Rattus norvegicus 81 AABR07053749.1 ENSRNOG00000053070 ENSRNOT00000088540 2 1 1 80 3 124004598 124004619 GTTCTGATGGATATGGAAGTGG 59 124004655 124004798 TTCCATAATTTCCTCTAGGTCCTC 60 Novel Rattus norvegicus 81 AABR07053782.1 ENSRNOG00000056616 ENSRNOT00000081821 2 1 1 83 3 125775926 125775947 CCTGAAGATTCACAGAAATGGT 59 125775991 125777213 TTTCTGCTGAGACATTGGC 59 Novel Rattus norvegicus 81 AABR07005508.1 ENSRNOG00000061369 ENSRNOT00000088187 2 1 1 90 1 183892305 183892323 GAAGTTGGATCACGTACCC 58 183885278 183892252 CTATGCTTGTCTCACTAGGC 58 Novel Rattus norvegicus 81 AABR07005535.1 ENSRNOG00000051825 ENSRNOT00000088158 3 1 1 82 1 185354986 185356204 GTGCTCAGTTGGACAAGAG 59 185354922 185354942 AGGATGAGGTAGAATTGTTCG 58 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 3 1 1 101 12 28145664 28150422 AGGTCAGGAACAAACTCCAG 60 28145582 28145600 AATCCATCTTCCCTCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025662.1 ENSRNOG00000059162 ENSRNOT00000089914 3 1 1 81 16 44809931 44809950 GAAGCATTCATGTGGAACCT 59 44783535 44809889 CCTTGTGTCATCAGTTCAGAG 59 Novel Rattus norvegicus 81 AABR07067310.1 ENSRNOG00000055308 ENSRNOT00000088507 3 1 1 80 9 39530098 39530119 AACAAGGATCCATTATGAGTGC 59 39519805 39530059 TCTTCTTTAGTCTGCTCTGGA 58 Novel Rattus norvegicus 81 AABR07005596.1 ENSRNOG00000059503 ENSRNOT00000091780 1 1 1 63 1 189798282 189798300 TCAAGAATCGGACTCCTCG 59 189819341 189819359 TGTAGTCTAGCCTGTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 1 1 1 82 12 33221167 33221185 GCTCCTTCTGGGAATTTGC 59 33221231 33231279 ATCCTCAGCGACAGATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067402.1 ENSRNOG00000052570 ENSRNOT00000085189 1 1 1 80 9 43282862 43282882 CTTCTCCTTCGTTGTCTTCCT 60 43282924 43286874 TCGTTCTCCACACCTTCAG 59 Novel Rattus norvegicus 81 AABR07072936.1 ENSRNOG00000059752 ENSRNOT00000089535 2 1 1 111 3 148132299 148132317 GAGAACAACGCTGTAGCTC 59 148131686 148132227 CAAGATGATTTCATCAACGGTG 58 Novel Rattus norvegicus 81 AABR07067471.2 ENSRNOG00000052452 ENSRNOT00000077855 1 1 1 85 9 48091104 48091122 GGGCGATTCACTACATCAC 58 48091171 48102247 ACTGTCCATCTCTTGAGCC 59 Novel Rattus norvegicus 81 AABR07036331.2 ENSRNOG00000057941 ENSRNOT00000090171 3 1 1 101 12 38874325 38874343 AGCAATGTCTGTGTTGTCC 58 38874405 38878011 AATTCACTTCTTAGTGGGAAGG 58 Novel Rattus norvegicus 81 AABR07026049.1 ENSRNOG00000054214 ENSRNOT00000089986 3 1 1 86 16 61221578 61228593 CAAGATCTATCCTGCAAGACTG 59 61228639 61228658 CACTTACACTGTATCAGCCC 58 Novel Rattus norvegicus 81 AC128986.1 ENSRNOG00000061174 ENSRNOT00000079892 3 1 1 60 3 156726025 156726044 GTTTCTGTTCCACAGGAGAG 58 156723130 156723149 TCTAGAAGGCACAGTAGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005950.1 ENSRNOG00000059014 ENSRNOT00000085634 3 1 1 92 1 208478581 208501200 CATTAAAGGGTCTGACACCAG 59 208501254 208501272 GTGTTGAGTGATTGGGTGG 59 Novel Rattus norvegicus 81 AABR07026197.1 ENSRNOG00000054467 ENSRNOT00000083218 2 1 1 114 16 67038465 67038485 CGGTATTATAATGCCAATGGG 57 67037867 67038389 TGTTGAACTCTCGAAGCTG 58 Novel Rattus norvegicus 81 AABR07026197.1 ENSRNOG00000054467 ENSRNOT00000083218 3 1 1 114 16 67038465 67038486 CCGGTATTATAATGCCAATGGG 59 67037868 67038390 GTTGAACTCTCGAAGCTGC 59 Novel Rattus norvegicus 81 AABR07054619.1 ENSRNOG00000060501 ENSRNOT00000078209 3 1 1 82 3 164625947 164625967 TTGGCCTAGGGTTTGATAGAC 60 164626009 164626665 TTTCATTTCCCTGTCATCTGC 59 Novel Rattus norvegicus 81 AC141169.2 ENSRNOG00000059041 ENSRNOT00000080464 1 1 1 80 9 69896439 69896458 ACATCAACCTCAGAGAAGGC 60 69896497 69899645 TGAAGAGTACCTCCTCAATACAG 59 Novel Rattus norvegicus 81 AABR07026361.1 ENSRNOG00000053572 ENSRNOT00000089518 1 1 1 80 16 74061964 74061982 TGTTCCTGTCTGACCTGTG 59 74060940 74061920 CTTGGACCAGTAGGAACCC 59 Novel Rattus norvegicus 81 AABR07054662.2 ENSRNOG00000058272 ENSRNOT00000090077 1 1 1 88 3 166293871 166295902 ACCAACAGATGTGAGGAGC 60 166293801 166293819 CAATTCCACGATGTCACCC 59 Novel Rattus norvegicus 81 AABR07026397.1 ENSRNOG00000059629 ENSRNOT00000084351 1 1 1 80 16 74986217 74987006 CAAGTCTACAATCTATGCAGTGAG 59 74986160 74986181 ATCATCAATCATGATTCTGCGG 59 Novel Rattus norvegicus 81 AC095937.1 ENSRNOG00000060364 ENSRNOT00000081566 1 1 1 80 1 217931500 217931518 GGTTTCCTGTCTGGATGTG 58 217925640 217931458 CTAGGTGTCATGAATCCACTC 58 Novel Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933 1 1 2 80 9 71388856 71394827 GATGACTGCATTCTAAGGCAC 60 71388796 71388819 CCCTTTATCTTCTTTACAAGGAGG 59 Novel Rattus norvegicus 81 AABR07054753.1 ENSRNOG00000060628 ENSRNOT00000088118 1 1 1 80 3 168643684 168646277 AGATAAGTGCTCCTCTGGC 59 168646321 168646339 GGTCTCATGAATGCAGGGA 60 Novel Rattus norvegicus 81 AABR07068044.2 ENSRNOG00000060393 ENSRNOT00000088594 3 1 1 73 9 79324990 79325008 TTTGAGTAGACACCCGAGG 59 79323670 79323688 TCTTTGCCCTAGAATGGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068046.1 ENSRNOG00000059494 ENSRNOT00000084822 2 1 1 64 9 79450090 79450108 GAAATTCGTGCTGCATGCT 60 79374521 79374539 GAGGGCCCTGAGAAATACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022113.1 ENSRNOG00000053904 ENSRNOT00000083559 2 1 1 81 13 108601146 108601168 GCTCAACTCTAGAGTAATACTCC 58 108594376 108601105 GTTCAACCTTGCTTGTTCC 57 Novel Rattus norvegicus 81 AABR07054948.1 ENSRNOG00000060715 ENSRNOT00000089263 3 1 1 114 3 174553390 174553408 GAAACAGCCTCTGCATGAG 59 174553486 174554931 TGTTGTCATTCTCATGCCC 58 Novel Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 2 1 1 62 16 78903781 78903799 AAAGCAGTCAAGGAACCAG 58 78880318 78903757 CACAGGACCTAAATTCCACCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037708.1 ENSRNOG00000052695 ENSRNOT00000092116 2 1 1 81 X 28698817 28698836 CAAGTCTGGATCCTCCTGTC 60 28688927 28698778 GTCAAAGTATCTTAGACACTTGGC 60 Novel Rattus norvegicus 81 AABR07026519.1 ENSRNOG00000057746 ENSRNOT00000087361 3 1 1 62 16 80703766 80703784 CAGGAAGTGACCTCACAGG 60 80702527 80702545 CCCACCTTATGTTGCAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055146.1 ENSRNOG00000051476 ENSRNOT00000079578 3 1 1 162 7 100353 100371 CCTTGCTTCCTACAAAGGA 57 93954 93972 GAAAGTTCTGTGGATCGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068203.2 ENSRNOG00000059293 ENSRNOT00000080391 2 1 1 82 9 90712091 90725540 AACAAACAGATTCTGAGGCA 58 90725585 90725603 CTCGATCTGCAATCAGGAG 58 Novel Rattus norvegicus 81 AABR07006536.2 ENSRNOG00000057614 ENSRNOT00000080182 3 1 1 83 1 238932783 238932803 GGGTTTAAAGGTAACCTCCAG 58 238932843 238933414 GTTTCTATCATCCAGTAGATGTGG 59 Novel Rattus norvegicus 81 AABR07038556.1 ENSRNOG00000058617 ENSRNOT00000091796 3 1 1 81 X 54912046 54913152 AAATCAAGGAGTACAAGGCCA 60 54911985 54912006 GGCCATGTTTATATGGAACCAG 60 Novel Rattus norvegicus 81 AABR07072528.3 ENSRNOG00000058489 ENSRNOT00000081861 1 1 1 88 16 82307784 82308709 CTGTGAAGACAGCTCAGGA 59 82307714 82307732 GAAGCCAGGAAACATGCAG 60 Novel Rattus norvegicus 81 AABR07055801.1 ENSRNOG00000060675 ENSRNOT00000079790 1 1 1 165 7 10168415 10169144 TTCAGCAACCTCTACGTGG 60 10169273 10169291 GTCCTCCATACAGGATCCG 59 Novel Rattus norvegicus 81 AABR07026565.2 ENSRNOG00000059439 ENSRNOT00000088632 2 1 1 60 16 83862611 83862630 GTGTCAACCCAACGAATCAG 60 83862650 83862671 GTCTGCTCTGATTTAATTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 3 1 1 123 16 86537922 86538760 AAAGGTAGGAGGTGTCAGC 59 86538846 86538865 CTACCTGAGACGTCCATGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC098022.2 ENSRNOG00000054594 ENSRNOT00000081706 2 1 1 80 7 20104746 20106050 GATATCTGGTCAACATGGTCG 59 20103484 20103503 GTGCAGCACACTAGAATAGG 59 Novel Rattus norvegicus 81 AABR07026623.1 ENSRNOG00000052556 ENSRNOT00000085748 2 1 1 61 16 86818858 86818876 TCTGAGTCCGTTACTCTGC 59 86818899 86829775 GGCATAGTTTCAACACTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 2 1 1 72 X 77956553 77957195 GCCCTTCATCTCTGAATGTG 59 77956500 77956518 TTACCAAGAGGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068400.1 ENSRNOG00000053724 ENSRNOT00000078836 3 1 1 65 9 103249262 103250500 AAAGATCCTGGAGAATGAAGAC 58 103249218 103249237 TTAAGAGCTTATTCGCTGGT 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07026912.2 ENSRNOG00000060172 ENSRNOT00000092050 1 1 1 112 17 4567805 4568080 AAGATACAACGAAGCGAGAG 58 4568152 4568173 ACTCACCTTCATCTTCTTTCTG 58 Novel Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 3 1 1 61 7 23198306 23251327 CAAGGCACGTATTAAATTTCCG 59 23198266 23198286 TCAAGAATCTGAAGGTAGGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026936.3 ENSRNOG00000054793 ENSRNOT00000086021 2 1 1 77 17 5656256 5656274 GACCCTCCAACCAGAAGTC 60 5660637 5660655 CATGTGACATCTCCTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068555.1 ENSRNOG00000055702 ENSRNOT00000091381 3 1 1 80 9 108353764 108405709 TTCACTATCAGCTCAATGTCTG 58 108353705 108353723 GGATCCTTCTCTTGGTGGT 59 Novel Rattus norvegicus 81 AABR07026936.2 ENSRNOG00000053660 ENSRNOT00000084425 1 1 1 80 17 5811316 5812455 GCAAGACCTATTGAAGCAAGG 60 5811256 5811278 GTTTCCTCATAAGAGTTTCAGGG 59 Novel Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 3 1 1 75 17 5877368 5877386 GGGTTCCTACCTGAACGTC 60 5877423 5889663 TCTCTGAAGACTGCAGATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026969.1 ENSRNOG00000053948 ENSRNOT00000090380 3 1 1 87 17 7611045 7611067 AGTACTATAACCCAGTCACAGAC 59 7607109 7610998 TGAATCACAGCAACACCTG 58 Novel Rattus norvegicus 81 AABR07068657.1 ENSRNOG00000058854 ENSRNOT00000084097 1 1 1 83 9 114215920 114218520 TTCTGTATAATGGAGGGTCCAG 59 114215858 114215876 GTCTTCTGGGCTTGAGAGG 60 Novel Rattus norvegicus 81 AABR07068709.1 ENSRNOG00000056020 ENSRNOT00000087394 3 1 1 63 9 115804356 115804374 AGGAATCCCACAATCCCAG 59 115806179 115806197 TTCCAACCAGAATCTTGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042662.1 ENSRNOG00000052666 ENSRNOT00000079178 1 1 1 79 19 2085412 2085430 GTGACTGCTTCAGATCCCT 59 2088132 2088151 ACATTCAGTCTCTGTCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068736.1 ENSRNOG00000061416 ENSRNOT00000091298 1 1 1 60 9 117214069 117257701 TCTGTCCTTCATGGGTAGTG 59 117257718 117257742 TAGCGATGATATTATCTCATCTGGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059,ENSRNOT00000077575 1 2 3 88 8 5173924 5173943 TTCAGTGAAGCAGACATCGA 60 5171985 5173879 GACTTTATGAAGTCAGGATCAACTG 60 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000084754 3 1 2 226 1 264487887 264487905 CATGGGCTCAGAATGTCAC 59 264488418 264488726 AAAGGAAATCGCTGATTCCG 59 Novel DesignRelaxed Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000082461 3 1 2 172 1 264488777 264488795 CTGTCCCTCCAATCTGTCC 60 264489689 264489707 TCATAAGGCGCAATCAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027268.1 ENSRNOG00000054163 ENSRNOT00000090770 3 1 1 81 17 22097843 22097863 CTTGAGAAGCTCAGAACTTCC 59 22097904 22098745 TAGATGAATGGGTGACAAGTG 58 Novel Rattus norvegicus 81 AABR07027390.3 ENSRNOG00000057157 ENSRNOT00000079814 2 1 1 103 17 27876747 27876765 CTTGTGGGAAAGCACAGAG 59 27869895 27869914 AGTAAGGCAGGTTGTATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 3 1 1 60 17 28000127 28002994 TACCCAAGCTTGCCTTCTC 60 28000085 28000103 TCTTCTCGGTGAAGAAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006993.1 ENSRNOG00000060255 ENSRNOT00000081828 1 1 1 87 1 275674406 275674424 GAACAACACTTCCAGGCTC 59 275674475 275677167 GATCCGCAGAAGTTACACG 59 Novel Rattus norvegicus 81 AABR07027478.2 ENSRNOG00000052021 ENSRNOT00000087921 1 1 1 80 17 33081035 33081053 GAAGACAACCGATGGAGAC 58 33081097 33081713 GTTTCCATGGAGCCTTGTC 59 Novel Rattus norvegicus 81 AABR07057377.1 ENSRNOG00000058185 ENSRNOT00000088850 1 1 1 94 7 68376332 68381647 CATCTCTTGGTTGATCTTCCTG 59 68381700 68381720 GCTGGTTTCTATCTTTCACCC 59 Novel Rattus norvegicus 81 AABR07007026.1 ENSRNOG00000052188 ENSRNOT00000083048 3 1 1 92 1 277540730 277563074 TTGAAATACGCCACTGTCC 58 277563130 277563148 GATGACAAAGTGGCAATGC 58 Novel Rattus norvegicus 81 AABR07043510.1 ENSRNOG00000057214 ENSRNOT00000088827 1 1 1 68 19 28990488 28990506 CCCTGATGACAAACATCCT 57 28990315 28990333 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC127140.1 ENSRNOG00000058510 ENSRNOT00000091087 2 1 1 80 2 8880222 8882413 TTACCTCAAGACTACTTGCCA 59 8882455 8882473 CCTCTTGGAAGTCAGAGCC 60 Novel Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 2 1 1 72 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82394598 82411850 TGGTTTGGACACAGAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057798.1 ENSRNOG00000056050 ENSRNOT00000087238 1 1 1 80 7 88033196 88071258 TAGGACAAGGTTAACAGGATTCC 60 88033138 88033156 TCACTGGTCAACCGTAGTG 59 Novel Rattus norvegicus 81 AC112557.2 ENSRNOG00000057691 ENSRNOT00000078804 1 1 1 67 8 48565081 48565099 ATGTTCTTTATGGCCTGGG 58 48565130 48567077 TCCTGTCTTAATGCGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057848.1 ENSRNOG00000058219 ENSRNOT00000082296 3 1 1 109 7 90747072 90749838 TGCCATCTAATGTGATGCTG 59 90746982 90747005 CAAATCTAGTGCAGAGATTCTGAG 59 Novel Rattus norvegicus 81 AC098959.1 ENSRNOG00000054105 ENSRNOT00000089322 2 1 1 86 10 14804467 14804486 CACTGTTCAACTGCTTCTCG 60 14802874 14804418 AGCCAGCTGGGAATTAGTG 60 Novel Rattus norvegicus 81 AABR07070087.1 ENSRNOG00000061855 ENSRNOT00000089529 1 1 1 126 8 51061845 51061864 TCTTCCTTCTGAATCCACAC 57 51062744 51062762 CTTCCTCCTCTCCATCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007584.3 ENSRNOG00000055958 ENSRNOT00000077298 3 1 1 80 2 20317494 20317513 ATGAGCGTTCCTACAATGTG 58 20317555 20321795 TTATTGATGATTCCCAGCCC 58 Novel Rattus norvegicus 81 AC119699.2 ENSRNOG00000058480 ENSRNOT00000083520 1 1 1 80 10 16507228 16513538 AAACCGCCTGAAATCTATGC 59 16507167 16507185 GTCGTCCTGTATTCTGCGA 60 Novel Rattus norvegicus 81 AC119699.1 ENSRNOG00000051385 ENSRNOT00000088890 1 1 1 80 10 16514366 16514575 TGGACCGTAACGGTTACAG 60 16514304 16514324 ACGCTATAGAAACCATCCCTG 60 Novel Rattus norvegicus 81 AC119699.3 ENSRNOG00000060453 ENSRNOT00000087147 2 1 1 83 10 16520855 16522736 ACCTGGAAAGGGAGAACTC 59 16522782 16522801 TTGTCTTGTTTACACGACGT 58 Novel Rattus norvegicus 81 AABR07029351.1 ENSRNOG00000055712 ENSRNOT00000084752 2 1 1 107 10 24519556 24521121 ACAACTTCAATGTGTCAGGG 58 24517859 24517877 ATGGGATCAGCTCCATACG 59 Novel Rattus norvegicus 81 AC141541.1 ENSRNOG00000055007 ENSRNOT00000078418 2 1 1 80 8 54892419 54892437 CTGTTTGTGCCTAACACCT 58 54888215 54892376 GGAAATGTCTCCATTCCTCC 58 Novel Rattus norvegicus 81 AABR07029490.1 ENSRNOG00000052198 ENSRNOT00000089508 3 1 1 85 10 30626161 30627595 AGCTGTAAAGGTTGAATCCTG 58 30626096 30626114 ACGCAATTCTATCCAAGCA 58 Novel Rattus norvegicus 81 AABR07070161.5 ENSRNOG00000059904 ENSRNOT00000082868 1 1 1 89 8 55542906 55543182 ATCAAGGTGAATGCATGGC 59 55542835 55542853 TGCTTCAGATCCACGAGAG 59 Novel Rattus norvegicus 81 AC091481.1 ENSRNOG00000060442 ENSRNOT00000090899 3 1 1 102 7 107847227 107847245 CTGCTGAGAAGTGAAGCTG 59 107847311 107861536 TGAGGCTGTAAAGCTCCAG 59 Novel Rattus norvegicus 81 AABR07007789.1 ENSRNOG00000053598 ENSRNOT00000083326 3 1 1 70 2 28264024 28264042 AGTTTCTGCAGGAGTGAGG 59 28282275 28282293 TTCCGGTCAAGTCTCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 1 1 2 60 X 149274230 149274251 AAGAAAGTGAAAGAAGTGCTGG 60 149274270 149279792 AATTTACCGTTGGGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058483.1 ENSRNOG00000052754 ENSRNOT00000084937 3 1 1 114 7 119074818 119074836 CAACCTACTCTGCCACCTC 60 119076763 119076781 GCTGATGCATAGTGTGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.3 ENSRNOG00000056623 ENSRNOT00000090356 3 1 1 80 10 41833292 41833310 GCATGTGAGAACCTTGGAG 59 41830906 41833251 TTTCTCAAGAGAACACCAACTG 59 Novel Rattus norvegicus 81 AABR07070272.1 ENSRNOG00000060681 ENSRNOT00000087466 2 1 1 84 8 62991843 62991862 CTAGGTCCGTGAAGATCTGG 59 62991907 62992733 GTAACCTTTCTCTGCACTCTG 59 Novel Rattus norvegicus 81 AABR07058578.2 ENSRNOG00000060017 ENSRNOT00000090002 3 1 1 80 7 125618320 125618338 CTCGGATGAACAAAGGACG 59 125618097 125618277 CTTAGTAGGCTTTGACCACG 58 Novel Rattus norvegicus 81 AABR07044427.1 ENSRNOG00000059881 ENSRNOT00000085168 3 1 1 80 20 5790675 5790695 CTTGACTGTAATGGAGACGTG 59 5790172 5790634 GCCAGTAGGACCTTTATCCT 59 Novel Rattus norvegicus 81 AABR07059002.1 ENSRNOG00000056565 ENSRNOT00000080318 3 1 1 80 4 732948 732966 GAAGCTTACGGTTCATGCC 59 733009 733195 CTAGAGAAAGGGTCTGGCTC 59 Novel Rattus norvegicus 81 AABR07059009.2 ENSRNOG00000058122 ENSRNOT00000082708 3 1 1 81 4 1093177 1093196 TGCAGAGCTTTGAAAGTGAG 59 1093240 1109976 CTAGAGGGAAGACCTGGGA 59 Novel Rattus norvegicus 81 AABR07070581.1 ENSRNOG00000053544 ENSRNOT00000086040 3 1 1 80 8 75773187 75773205 ATTGCACTCAAGGCAAGAC 59 75773247 75774601 ATGAACAGTGGAATTCCTCCA 60 Novel Rattus norvegicus 81 AABR07070587.1 ENSRNOG00000060351 ENSRNOT00000091525 3 1 1 61 8 76103051 76104211 TTGATGAAGCTCGTGAGAGG 60 76103009 76103027 CATTCTGTGGTGTGCAGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07070635.1 ENSRNOG00000053862 ENSRNOT00000088767 3 1 1 90 8 78320469 78320490 AGTAGATAAGAAGAGGACAGCA 58 78318842 78320418 TTCAGGATCCAAACCACGA 59 Novel Rattus norvegicus 81 AABR07007987.1 ENSRNOG00000056598 ENSRNOT00000089696 2 1 1 80 2 37426238 37427577 CCATGTTGCATCACATTCAC 58 37427617 37427638 TGTCTCTGCTTGTTTATACGTG 59 Novel Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 1 1 1 63 2 38743676 38745789 TTAAGTTACAGGCTGCTGG 58 38745816 38745834 CAGCATCTCAGAGGAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044712.1 ENSRNOG00000058621 ENSRNOT00000091408 2 1 1 80 20 18095413 18108474 AAATTCAGGCTGACCATATTCC 59 18095354 18095374 TCTACAGATGACTTGCATGGT 59 Novel Rattus norvegicus 81 AABR07070801.2 ENSRNOG00000061652 ENSRNOT00000086475 1 1 1 80 8 84878585 84878605 ACACATTTGTCTCCACATCTC 58 84878646 84878747 TCTCACCTGTGAGTCTTAGC 59 Novel Rattus norvegicus 81 AABR07072979.1 ENSRNOG00000056814 ENSRNOT00000077829 3 1 1 80 4 31989079 32002533 TTACTTCGAGTTTCTTCGCAG 59 32002574 32002593 CTGTCGTTGCTAAGGAAGAC 59 Novel Rattus norvegicus 81 AABR07028535.1 ENSRNOG00000052494 ENSRNOT00000090433 1 1 1 80 17 74010068 74014011 ATTGAAGAACAGGAAAGGCTC 59 74014050 74014071 GGTTAGCTCTAAAGATCCACAG 58 Novel Rattus norvegicus 81 AABR07070887.1 ENSRNOG00000060958 ENSRNOT00000085803 2 1 1 80 8 89881601 89881622 CTCTTCATGAATGTGGATGAGG 59 89877771 89881562 TCCAACCTCATGAGTATGTGG 60 Novel Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000084250 2 1 2 81 2 43405467 43405485 TGAGTGCTCTGTAGTTGGG 59 43405530 43406582 CTCTCAGGACCCATCTGAG 59 Novel Rattus norvegicus 81 AABR07071045.1 ENSRNOG00000058170 ENSRNOT00000087685 1 1 1 81 8 98155569 98158084 CTAGTTCAAAGGCTGGACAG 58 98158128 98158146 AAGATGCTTGATGTGCACC 59 Novel Rattus norvegicus 81 AABR07059869.1 ENSRNOG00000057426 ENSRNOT00000089394 3 1 1 97 4 39145253 39147499 GGAGATCAGAAAGATAGACACCT 59 39147553 39147574 TGCAGAGAATAGTAGCATACCT 59 Novel Rattus norvegicus 81 AABR07059875.1 ENSRNOG00000053063 ENSRNOT00000091383 1 1 1 62 4 39632648 39632669 GGATACTCTGGAGTCAAATGTG 59 39631082 39631100 AGTACGCGTTTCTCAACGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071117.1 ENSRNOG00000057191 ENSRNOT00000078753 1 1 1 80 8 100751528 100751825 CCAATACATTGTGGATATGGCT 59 100751864 100751884 ACTGAAATGGTTACTGCAAGG 59 Novel Rattus norvegicus 81 AABR07044836.1 ENSRNOG00000061934 ENSRNOT00000081974 2 1 1 90 20 23025316 23027434 TCTCAACAAGGAGCTCTTCTG 60 23025246 23025264 GGGAAAGATCCTCCAACCC 60 Novel Rattus norvegicus 81 AABR07008142.1 ENSRNOG00000052560 ENSRNOT00000080850 3 1 1 81 2 45616630 45619431 AAGTACAAGGCTTTGTGACTG 59 45616569 45616587 GAAGGTGAAATGGTCAGGC 59 Novel Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 1 1 1 63 20 24445734 24445752 AGGTCATCAGAGTAGCCTG 58 24445339 24445710 CAGACAATTACATTTGTCCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059991.1 ENSRNOG00000057163 ENSRNOT00000089128 1 1 1 98 4 47937488 47942058 GAGAAATACAGAAAGCAAAGGC 58 47937411 47937432 CACATATCTTCATGCCTTACCT 58 Novel Rattus norvegicus 81 AABR07071383.1 ENSRNOG00000059497 ENSRNOT00000077319 3 1 1 84 8 112830896 112830916 GGAAGTTGATTACTGGCATGG 59 112829969 112830851 GGGTTTCTGTTGCTCTTCTC 59 Novel Rattus norvegicus 81 AC239813.2 ENSRNOG00000056576 ENSRNOT00000087128 3 1 1 89 Y 182583 182699 TTCTGGTTCGGATGCTAGAG 59 182751 182769 GACCAGTGTAGAGGAGTGG 59 Novel Rattus norvegicus 81 LOC103694564 ENSRNOG00000053540 ENSRNOT00000077210 3 1 1 116 Y 2040106 2040326 CGCTGAAGTTCTCTAGATAACAC 59 2040401 2040420 TTCACCAGAAGAGTCTCAGC 60 Novel Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 3 1 1 60 2 68819537 68819556 ACTCGAATTTGGAACCTACC 58 68819578 68820155 CTCTTCTCCCTGGTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC125982.2 ENSRNOG00000052743 ENSRNOT00000080883 2 1 1 109 7 130472640 130472658 GGAGGTCAGAGCTTACTGG 59 130472730 130473913 GACCGACAGAGCTAAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071659.2 ENSRNOG00000053160 ENSRNOT00000089661 1 1 1 97 8 126082687 126082705 ACTACCAAACTCCAAGCCA 59 126082508 126082626 TAGCCAAACAGAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07058773.1 ENSRNOG00000055355 ENSRNOT00000082261 1 1 1 88 7 136953010 136953028 AGACAGGAAGCAGTGTTCC 60 136953076 136955293 CTGAAATTACCAGTGTTCTGACC 60 Novel Rattus norvegicus 81 AABR07008977.1 ENSRNOG00000056592 ENSRNOT00000082096 3 1 1 80 2 82000360 82006005 CACTCATCTCTAAGTCTTGAGTG 59 82000302 82000322 CTGCATGTGATTTCTTCACAC 58 Novel Rattus norvegicus 81 AABR07058785.1 ENSRNOG00000056121 ENSRNOT00000083547 1 1 1 60 7 137383819 137383839 TCTTTAACAACGCCAGAATCC 59 137376035 137376053 GTTCTCACCAACATCCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044123.1 ENSRNOG00000061798 ENSRNOT00000089331 2 1 1 73 19 58907146 58907164 ATATCAGAGCTGCCAAGGA 58 58908116 58908134 TGCCAAGACCTTACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058815.1 ENSRNOG00000055003 ENSRNOT00000077822 1 1 1 80 7 138414462 138424269 GGCTCAGTTATGCTTGTTCAG 60 138414402 138414422 AGCATTTGGAAGGAAGATGGA 60 Novel Rattus norvegicus 81 AABR07044171.2 ENSRNOG00000055617 ENSRNOT00000086665 2 1 1 82 19 61316534 61316556 GCAGAGAATCAACTACAGAAGAG 59 61313344 61316492 TTGGATCATGCCACCTGAG 60 Novel Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 2 1 1 60 19 61784908 61789235 AAACAAGAGCTTGAAGGGC 59 61784866 61784887 GATCATCAATACCTTTCTTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010155.1 ENSRNOG00000054869 ENSRNOT00000083082 2 1 1 80 2 127249173 127249348 GATGCTCAGGAGTTATCAACAC 59 127249114 127249135 AGTTAAATGTACAGACTCGGTG 58 Novel Rattus norvegicus 81 AABR07010330.2 ENSRNOG00000060192 ENSRNOT00000078133 1 1 1 80 2 132348344 132352880 GAAGGTCCTACAGATTCAGAG 57 132348284 132348302 TTGTGGTGGATTTATGGGC 58 Novel Rattus norvegicus 81 AABR07010763.2 ENSRNOG00000058839 ENSRNOT00000084830 2 1 1 81 2 150610674 150610693 GCACTAAGCAAGTAGAGGTC 58 150566191 150610633 TGTATTGTGGAAAGTCTTCCTG 58 Novel Rattus norvegicus 81 AABR07011013.1 ENSRNOG00000054340 ENSRNOT00000087243 3 1 1 84 2 156674906 156674924 ACTTGGAAGATGCCTTGGA 59 156623239 156674858 TTGTCTGACCAACCTCCTC 59 Novel Rattus norvegicus 81 AABR07011934.1 ENSRNOG00000054050 ENSRNOT00000082323 2 1 1 80 2 176663416 176665597 CCCTACAGCCATTATTTACCAG 59 176665637 176665656 TGATGCAGGAGAGTGTAGTC 59 Novel Rattus norvegicus 81 AC098750.5 ENSRNOG00000058324 ENSRNOT00000091819 3 1 1 80 2 188600965 188601801 CCTCTAAGATTTGGTCTGATATTCC 59 188600909 188600928 GAGGACAGGATAGAGGAACG 59 Novel Rattus norvegicus 81 AABR07012276.1 ENSRNOG00000061912 ENSRNOT00000085249 1 1 1 81 2 192045712 192060824 GAAGGAAGTCTTTAATTCTCAGCC 60 192060864 192060882 TTTCCTTCTGGACCCTTGG 59 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 2 1 1 61 2 196554735 196554753 TTCGTTGTCCTTGTGTTCG 59 196554484 196554710 GAGCATTCTTTGTAGGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014125.1 ENSRNOG00000054857 ENSRNOT00000081396 2 1 1 80 14 1518057 1519355 CCCTTTCACTTTCAAGAGACG 59 1517997 1518015 GTGCTTATCTTGAGGGCCA 60 Novel Rattus norvegicus 81 AC131411.3 ENSRNOG00000060007 ENSRNOT00000083098 1 1 1 75 14 11367993 11368848 CTATCCAAGTGAACATGTTTCC 58 11367939 11367958 GCATAGCAAGGTCTCATCTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07014512.2 ENSRNOG00000058092 ENSRNOT00000091701 3 1 1 61 14 18855562 18855583 GCTCTTTAAGATGGCTCTTTGG 60 18855605 18855815 CATCTGCACTTTGCTCTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07012774.1 ENSRNOG00000052078 ENSRNOT00000079825 2 1 1 80 2 207845645 207845899 GAAGATCTCAGCTCCCTTCC 60 207845941 207845960 AGAGGTTGTCTGGTGTTCAG 60 Novel Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 1 2 2 81 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647893 211647912 TTAACTGCTTCATGCCTGTC 59 Novel Rattus norvegicus 81 AABR07013250.1 ENSRNOG00000053168 ENSRNOT00000088970 3 1 1 81 2 230477282 230477300 CTGACACCATGGATGAGCT 60 230477339 230478422 GCCATATGTTCATAGGATTTCTGAG 60 Novel Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 1 1 1 85 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538831 233542009 TAGAGATGGGCCACAAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 3 1 1 126 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538790 233538808 GTAAGCTGTGCTTCGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013672.1 ENSRNOG00000058016 ENSRNOT00000090184 3 1 1 80 2 248923038 248923058 TAATCGAAGTTGTCTGTCTGC 59 248923097 248924487 TATCACTTACCGTCACATAGGA 58 Novel Rattus norvegicus 81 AABR07013689.2 ENSRNOG00000059575 ENSRNOT00000092042 2 1 1 80 2 250430277 250431861 CCAACTGTTACTCATGTTGCA 59 250430217 250430238 GTCCATCATCTCGAATGATCAG 59 Novel Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 3 1 1 63 2 115231951 115231969 TTCCTTCTGTTCCTGAGCA 59 115231903 115231921 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 1 1 1 62 11 43415653 43415672 CTCCTGTAATGACCCTTCTC 57 43415701 43415719 AATACCTGGATCGAGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786 2 1 2 81 X 22369776 22399616 ATACCCAGAACATCCACCA 58 22369713 22369732 AGATACTTCTGATGAGCCCT 58 Novel Rattus norvegicus 81 AABR07053152.1 ENSRNOG00000041826 ENSRNOT00000063579 3 1 1 62 3 94352225 94352246 GGAGTGTTTGCTGTATAATTGG 58 94352184 94352202 CTCAAGTCATGCCTACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 1 1 1 62 2 196582948 196582966 AAGAGGAGGAAGAGGAGGA 59 196582591 196582609 CTTCCTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055267 ENSRNOT00000088460 1 1 1 60 4 62765759 62765779 GTAAGAGGGAACTGCATTCTG 59 62765795 62765819 GTAATTCCTACATCTGGGAAATCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121413.1 ENSRNOG00000056044 ENSRNOT00000080738 2 1 1 74 17 9689754 9689772 TGGCAAGTGAGACAGATGG 60 9689809 9689828 GCACAAGGGAAGAGTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047750.1 ENSRNOG00000054604 ENSRNOT00000072326 1 1 1 65 5 45729574 45729595 CCTAGCCATTCTGACTTGTG 58 45729528 45729546 TAGTCATCAGGGAAAGGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07047750.1 ENSRNOG00000054604 ENSRNOT00000072326 2 1 1 66 5 45729574 45729596 TCCTAGCCATTCTGACTTGTG 60 45729528 45729546 TAGTCATCAGGGAAAGGCA 58 Novel DesignRelaxed Rattus norvegicus 81 U2 ENSRNOG00000057486 ENSRNOT00000082816 3 1 1 60 4 170258212 170258230 GAGGGCAAGATCTGTTCTC 58 170258253 170258272 ATGCGGTCTTCAGATAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000057134 ENSRNOT00000089316 2 1 1 61 4 19516041 19516062 TCAAACCTAAGTTCCCATTAGG 58 19516084 19516102 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000080556 2 1 2 81 13 49033554 49035052 CCACAAAGAAAGTCAGGTGC 60 49035095 49035114 GTGACGCATTGGTTGTAGTC 60 Novel Rattus norvegicus 81 AABR07027753.4 ENSRNOG00000058263 ENSRNOT00000079139 1 1 1 60 17 43817574 43817592 CGTGAACGACATCTTCGAG 59 43817616 43817634 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094605.2 ENSRNOG00000054953 ENSRNOT00000080650 3 1 1 84 18 30418275 30418294 CCAGAGCTACCAGTATGAGG 59 30418336 30418360 GACACTATTGGGAATGATGTTCAG 60 Novel Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 2 1 1 70 16 20108506 20108524 ATTTACGGAAAGTCAGGGC 58 20108449 20108468 GCACAGGTTTCTAGTCTACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 1 1 1 84 2 198601738 198601756 AGAGCTCAGAGCAAACCAG 60 198601805 198601823 CTGTGGTAAGGAATCCGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000092119 1 1 2 85 10 4487999 4488719 CAGGCGAGCATAAGAAAGG 59 4488768 4488786 TCACTCCCATTCAACAGCA 59 Novel Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 1 1 1 64 5 168845244 168845263 GCTGAAATCACCATCTTTGG 58 168845330 168845348 ATAGCTCTTTGGACTCCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 2 1 1 60 10 83536084 83536102 TTGGCATTAGTCACTTGGG 58 83536127 83536146 AAGCCATGTACCAACATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 3 1 1 68 12 54648 54666 GTAAGTTCAGCTCCCAGAG 57 53884 53903 TAAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC135026.1 ENSRNOG00000054620 ENSRNOT00000083884 3 1 1 115 1 48880210 48891017 AAAGAATGGAGGATGTATGCAC 59 48880116 48880134 CGTCAAACCAGTGATCACC 59 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 1 2 5 97 2 123761677 123762138 TCATTACAAGATGCCAACGTG 59 123762197 123762215 ATGATGAGCTCAGCATCCA 59 Novel Rattus norvegicus 81 Rn60_13_0803.1 ENSRNOG00000051311 ENSRNOT00000076718 3 1 1 80 13 75366062 75366901 GAGCCACTTCTTGATCTAGGA 59 75366942 75366961 GAAGTCTTCTTCACTGTCCG 58 Novel Rattus norvegicus 81 AABR07010061.1 ENSRNOG00000040440 ENSRNOT00000062193 2 1 1 60 2 122190611 122190631 AAGAGCACATTATTGCGAAGG 59 122190651 122190671 AAGATATCAAAGACGTGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010061.1 ENSRNOG00000040440 ENSRNOT00000062193 3 1 1 60 2 122190612 122190631 AGAGCACATTATTGCGAAGG 59 122190651 122190672 GAAGATATCAAAGACGTGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 3 1 1 98 1 20332054 20332075 TCCTGTCCTAATAAGAACTGGG 59 20331976 20331994 GATAAGAAAGCAGCCGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 2 2 2 101 2 208543591 208545141 CTTTCACCTGGCACTTCAG 59 208550238 208550259 TACACAAACGATCAGAATGGAC 59 Novel Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 3 1 1 105 3 145831629 145831648 CAAGGAGGACTTCCATTTGC 59 145831717 145831735 TTCACAGACCATCATCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056367 ENSRNOT00000080841 1 1 1 60 9 94216691 94216712 TTGTATGGATACAGCGATTAGC 59 94216652 94216673 ATACTCCACAAATGTGTTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131885.1 ENSRNOG00000058920 ENSRNOT00000091946 3 1 1 85 6 136301477 136303996 TGTGCTATAACCGAGACTGG 59 136304044 136304062 CTTGCTCCACATCCTCTCC 60 Novel Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000068577 1 1 2 120 10 11879764 11880326 GAAACACAGCTTCCAGTTCC 60 11880409 11880427 CACATGGTCTCCTCCAAGG 60 Novel Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000076382 3 1 2 80 10 11878985 11879423 GCTTCGAATAAGAGAAGATGCA 59 11879462 11879482 CCCTCATAGATGTTAGGTGGT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052996 ENSRNOT00000091162 2 1 1 60 13 113621658 113621678 TGTTGATCCGTCTGATCTGAG 60 113621696 113621718 CATATGGAATGAAGAGGAAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 2 2 2 83 6 139784132 139911804 TTTGAAAGGTGTCCAGTGTG 59 139784068 139784086 CAGGAGAGTTTCAGGGACC 59 Novel Rattus norvegicus 81 AABR07065656.4 ENSRNOG00000053312 ENSRNOT00000087351 2 1 2 81 6 139004723 139004744 ATACCTGCAAATGAACAGTCTG 59 139004620 139004684 CTGCTGGTCTATAATACCTGTG 58 Novel Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 1 1 1 60 8 53903707 53903726 TGCCAGGATCTATCTATGGA 57 53903748 53903769 CTGGGAATTCCTTTGAAATTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 2 1 1 84 1 222525816 222525834 GTTGAGTCTTGGGTTCCAG 58 222525745 222525763 GAGAAGCCCTTGGTCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 1 1 1 63 1 169279847 169279865 CAATGCCTGCTTGACTCAG 59 169279801 169279819 CAGGATGCCAGACTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 1 2 2 80 1 1441923 1441942 CCAAGTGCAATCTTTCTCTG 57 1440635 1441882 AGTGTACATCTTCTAGCATCG 57 Novel Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 3 1 1 74 5 24974435 24974454 TTTGTGCATGGTATTGGTCC 59 24970285 24970303 GCTACATCCTCATGCTAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 1 1 1 115 14 82289301 82289319 TACCCTGTCTGGAGTCCTC 60 82288646 82288664 ATACCTGAGGTCTTGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 1 3 3 80 1 19639619 19639638 AGTGAAGTCCCAGATGACTC 59 19639394 19639576 GCCTACTGGAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 1 1 1 95 14 104764455 104764473 CTGTACTGGCAGGATCTCC 59 104768582 104768600 GGAGATGCTTGCAGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 1 1 1 66 15 12756855 12756874 CGTGATAAGGTCAATGAGGA 57 12792288 12792306 TCATGGAGCTGTTGTACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 1 1 1 66 4 171959381 171959399 AGACATCAGCAAGTACCCA 58 171960447 171960465 AATCGTTTATGGTCGCCGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 1 3 3 82 20 56198702 56199212 TGGTTATGCAAATCAGAACCTG 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 2 3 3 82 20 56198644 56198663 AGCGCTCATTTACATATGCA 58 56198708 56199215 TTGCAGGTTCTGATTTGCA 58 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 2 1 1 65 5 132777766 132777785 ACATCAAGCTCATGTCACTG 58 132791302 132791320 CACATGCTTCACCTCTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336 3 1 3 88 1 47513711 47513730 AAACCCTTTGTCCAAAGCTG 59 47513781 47534077 CGTGAACACCTCTGTTCCT 60 Novel Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 1 2 2 80 5 142406975 142406993 GCCATACAGACATCACCGT 60 142405995 142406931 TGTGCTGGTCTGTGATAGG 59 Novel Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 1 1 1 60 6 36731268 36731288 CTATGATCCTTCACCTCACAG 58 36729829 36729847 CTAGGGCCTGGAATTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 1 2 2 80 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199562 TTCCCTGAGAAGTGAATTGC 58 Novel Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 1 2 2 80 1 71223090 71223111 CATCCTAGAGCAAGGTAATGAG 58 71207957 71223049 CATCCAGACTCCAATGCTG 58 Novel Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 1 1 1 105 15 84004987 84005005 TTCAGAAGGTTTCTGCTGC 58 84009913 84009931 CTCTGTGCTTCCCTCTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 1 2 2 80 3 4734834 4735902 GATCATGAGGAAGGTGACCA 59 4735945 4735963 GTCCTCTTCCTTACTCGCT 59 Novel Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 3 1 1 64 3 17198651 17198672 GACAATAGAAATCCTTGCATCC 58 17208078 17208098 TTTCTCCTTTCTTCCTACCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 3 1 1 62 6 97206216 97206236 GGACCATGGATTAAGCAACAC 60 97205292 97205311 TCTACAGAGGGAGGGATGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 2 1 1 65 3 36633391 36633410 CCGTGACTTTCCATAATGCT 58 36581245 36581263 CCCAAGGGTTTAACCAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 3 1 1 81 11 39618518 39618536 TCAGGCCAACATGAGTGAG 60 39648240 39648262 GACCATCTTACCATTATCTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 2 1 1 60 11 83377005 83377023 CTCATGGAAGTTGGTCGGT 60 83375960 83375978 TGTGGATGAGCAGAAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 3 1 1 61 3 71109802 71109823 GATACATCCACCTCAGTTTCCT 60 71108009 71108027 CCGTGGTCTTCAGTAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 1 2 3 80 12 3308127 3308146 AACTCTTCTGGCAAATCACC 59 3308188 3309527 TCCTCTTGATGCATTATCGC 58 Novel Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 2 1 1 77 12 6233476 6233494 GCAGGGAACAGAAACAGAG 59 6233795 6233813 CAGTTATCAGCTCCCATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 1 1 1 72 9 18820386 18820405 CAGGCAGATGAATGGATGAG 59 18818492 18818510 ATGTTCTGTGGACCCACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 3 1 1 79 16 19807200 19807218 ACCAGGTCTTACAGAAACG 57 19807025 19807043 GAAGATACTGTGGAGGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 3 1 1 61 16 24630680 24630698 AAGGACAATGCTTTGCTCC 59 24632214 24632232 AGAACTCCAAGTCTGAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 1 1 1 103 12 33221228 33221246 GATCACATCTGTCGCTGAG 58 33231343 33231361 GTCAAGTCTCAGGGACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922,ENSRNOT00000084598 1 2 2 80 16 87443303 87443324 CATCATCACATGCTATCTTTGG 58 87443364 87470795 CAAATGGAGGCAAATCTCAG 57 Novel Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 2 1 1 75 9 113800847 113800865 GAGCAAGTGCCTCATTCAG 59 113788478 113788496 CATGCACTCCTTACAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 3 2 2 85 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146056 26146075 ATACCTTCTGGTGCATTCCA 59 Novel Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000088976 2 1 2 122 7 26145821 26145937 TACAGAGGGCTAGGTCTCC 60 26145717 26145735 GTCTCACTTACTTCCGCCA 59 Novel Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 3 1 1 62 1 257044020 257044040 AATGTACTGTGCACCTAAAGG 58 257041631 257041649 TGTCCTGCCTCAGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 1 1 1 60 19 3742504 3742523 CTTGGCAATTTCGTTTGGTC 59 3734253 3734272 ACAAAGGTCTTCTGAAGCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000077575 2 1 3 149 8 5173953 5175613 CAGCAGTATGAAGAAGATACCA 58 5171955 5171973 GCTTTGCAAGACTCATGGA 59 Novel Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545 3 1 2 84 17 19056995 19057689 GAGCCAAACTCAGAGTTCC 58 19057737 19057755 GATGACAGGCAAGACATGG 59 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 1 2 2 80 10 107629 109350 TCGACAAGACAATCTGCCA 59 109394 109412 TCAAATCCTGCACCAAGGA 59 Novel Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 1 1 1 60 10 10943268 10943286 CAGAAGAGGATTGAGGGCA 59 10921312 10921330 AATCCTGCAGAGTCTTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 1 1 1 91 X 139471784 139471805 CTATTCCAAAGACATAGCACTG 57 139473991 139474010 CTTGGTGACTTACCTCTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 2 1 1 60 4 5628102 5628120 ATTATGGGATGTGCTGAGG 57 5627169 5627190 CTGATGTCCTATGACTTTAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 1 2 2 80 17 62682428 62682447 CATTTAGCTCCCAGTCACGA 60 62681975 62682385 AGTCACGTTTCGAGCTCTC 60 Novel Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 2 1 1 62 8 84681120 84681138 GGAAGAAGTGGACCATCAG 58 84671541 84671559 AGTGGCACCATCAGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 3 1 1 82 2 49857572 49857591 AGAGTGGTGGATCTGAAGTG 59 49908084 49908108 GGAGATAATAATTTCACCATGTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 1 2 2 83 20 41022101 41023151 GTTGACTGGTAGATCCCAGG 60 41022037 41022055 TCATCTTCTCCTAGCGCTG 59 Novel Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 3 2 2 80 4 68424649 68424669 TAAAGAACTCCACAGCAACTC 58 68424708 68425221 GAAGGTTCATTCATGTCAATCC 58 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 3 1 1 92 2 65011788 65011806 AATCAGCACTCACTGACGT 59 65010644 65010664 TGTTCTCCATAGAAAGTGTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 1 1 1 60 2 254280096 254280114 TTCTTGGAGGAAATCTGCC 57 254285562 254285580 GCACTGGAGACAACTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AY172581.24 ENSRNOG00000043866 ENSRNOT00000069133 1 1 1 60 MT 2553 2575 GTACGAAAGGACAAGAGAAATGG 60 2592 2613 TTCATAAATTGGTTGGGAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy1a3 ENSRNOG00000012302 ENSRNOT00000017190 1 1 1 80 2 181048153 181050978 CCACGACATACAGGTTACTC 58 181048092 181048110 GGAAGTTTGGTGGAAGCTC 59 NA Rattus norvegicus 81 Sypl2 ENSRNOG00000019780 ENSRNOT00000026883 3 1 1 82 2 211009024 211010241 CCCTTCAGGTTGTACCAGG 60 211008960 211008978 TCTCCCATGAGGTTCATGG 59 NA Rattus norvegicus 81 Per3 ENSRNOG00000018413 ENSRNOT00000024932 3 1 1 80 5 168104286 168104304 TCTACATCGAGTCGATGGC 59 168100217 168104242 TCTGCTCATCACTACCCTG 59 NA Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 3 2 2 80 15 34239621 34239735 GCGTACTCTTCAGATTGAGTC 59 34239777 34239795 GAGAACAGGATCTGGGAGC 60 NA Rattus norvegicus 81 Mir124-2 ENSRNOG00000035499 ENSRNOT00000053622 2 1 1 65 2 102311608 102311627 GATCAGAGACTCTGCTCTCC 59 102311654 102311673 GCGTGCCTTAATTGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif2a ENSRNOG00000014000 ENSRNOT00000019189 1 1 1 80 2 38169532 38171724 TAATAGAGTGGTTGGTTCAGC 58 38169472 38169490 ACGCTACCATTCTGTTGTG 58 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000046858 ENSRNOT00000075521 3 1 1 60 X 106488354 106488372 ACGGTCTCAAGGGAAACAG 60 106488394 106488414 GCAATCGGTATAACTTGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nphp4 ENSRNOG00000011967 ENSRNOT00000066623 1 1 1 80 5 169717295 169717314 AAGATCTTTCAAGCCTCCTC 57 169717356 169717871 AATACAGATCCTGCTTGGAG 57 NA Rattus norvegicus 81 Mir3597-2 ENSRNOG00000035628 ENSRNOT00000053751 1 1 1 65 2 11884716 11884739 CGGTTATCTAGCTTTATGAAGACC 59 11884674 11884693 AGCGAGTTGTTATCTTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018028.1 ENSRNOG00000031618 ENSRNOT00000028062 3 1 1 104 15 36417781 36417802 ATCATGGATGAGAATTCTGGGA 59 36417328 36417718 AGTGACAATTATCTTGCTCCC 58 NA Rattus norvegicus 81 Lst1 ENSRNOG00000000855 ENSRNOT00000065940 2 1 1 80 20 5176237 5177539 CTAGAAAGAAACGCCCAGG 58 5176175 5176193 CATATCACTGCTGGATGCG 59 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 3 2 2 80 15 34356667 34356686 CCATCCATAAGCACTACAGC 59 34356727 34356899 TGGCAGCTAGATACTCAAGAC 59 NA Rattus norvegicus 81 Ppcs ENSRNOG00000008572 ENSRNOT00000011392 2 1 1 80 5 138469056 138469238 TCAATCCATTAGGCTCTTCTG 58 138468996 138469014 CAGGCATTTCAGAGACAGG 58 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 1 2 2 80 2 143926238 143926721 GTGTTTGATGACACTTTGCTG 59 143926178 143926200 CATTACTACGGTTAAGGTTCCTG 59 NA Rattus norvegicus 81 Sclt1 ENSRNOG00000014139 ENSRNOT00000019256 2 1 1 80 2 128653264 128653284 CTTTACCTCCTCTCATTGCTG 59 128642826 128653226 CCATGTGTTTCTGGTAATAGGTC 59 NA Rattus norvegicus 81 Krtap26-1 ENSRNOG00000048212 ENSRNOT00000074102 3 1 1 60 11 28613810 28613828 CCACTCCCTTGTGTATCCA 59 28613768 28613788 GCCTACATCCATAAGTGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Limd1 ENSRNOG00000004837 ENSRNOT00000006554 3 1 1 80 8 132589809 132595139 ATTATGGACATGATCCTACAGG 57 132595178 132595198 TAGACACTCATTGCAGATGAC 58 NA Rattus norvegicus 81 Mir3583 ENSRNOG00000049006 ENSRNOT00000074381 3 1 1 60 5 150732605 150732626 CACTAATGGTGAGCATGAAGAG 59 150732646 150732665 GAAGTCAGGTTCATCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 1 3 3 80 2 216502013 216502031 TTCAAGCACAATCCTTGCG 60 216501297 216501972 TTCATAAGATGAAGCACCTGGA 60 NA Rattus norvegicus 81 Stk38 ENSRNOG00000000519 ENSRNOT00000059194 1 1 1 80 20 6228008 6228028 GAACTGGAAGGAAACTTTGAC 57 6227793 6227967 CAGCAGAACCTCAGAATCAG 58 NA Rattus norvegicus 81 Tmem30c ENSRNOG00000001644 ENSRNOT00000002241 2 1 1 81 11 45347038 45352633 CATTTGCAGGAAGTTCAAAGC 59 45352676 45352694 AAGCCATTGTTTCCTGGGT 60 NA Rattus norvegicus 81 Igsf1 ENSRNOG00000007600 ENSRNOT00000010325 3 1 1 80 X 136798304 136800116 CTGAGACTCAGAGAAGCCT 58 136798242 136798262 ACAGCAAAGAAGAGCTATGAG 58 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000079955,ENSRNOT00000066940 1 2 2 60 11 35097931 35097949 CATCCTGGAGGGAATGGTG 60 35026282 35026300 GATGTAGGAGCTTCGAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Cops5 ENSRNOG00000006499 ENSRNOT00000008877 2 1 1 80 5 8888081 8888102 AAACTACTTGAGCTCTTGTGGA 60 8888140 8892009 GGTATAGTCAGCATTGGTAAGC 59 NA Rattus norvegicus 81 Mir3075 ENSRNOG00000046554 ENSRNOT00000074012 2 1 1 60 16 1822808 1822831 CTATTTACTCTGCGGTTTGTACTG 60 1822847 1822868 GAAGACAAGAGGTAACTTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop9 ENSRNOG00000020321 ENSRNOT00000027604 2 1 1 80 15 34438396 34438414 CTTCCTTGTTGGCTTACGA 58 34438456 34438637 CCATTTCTACCTGATGCTCTG 59 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000061047 1 1 2 97 11 36880191 36911836 TCAGGAGATAATGATGGGCAG 60 36911895 36911913 TGAGACTGAATGGCCACAG 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000015502 ENSRNOT00000020907 3 1 1 80 2 219663617 219664406 TCAACAGGGTGTTGTTCAG 58 219663555 219663573 ATGAAGCCATAAAGGGCTG 58 NA Rattus norvegicus 81 RGD1565472 ENSRNOG00000046991 ENSRNOT00000072806 3 1 1 90 11 39766884 39767638 CATCCTCACTGTCCCACAG 60 39766812 39766831 CTTCTTATGCTGTTGCTGCT 59 NA Rattus norvegicus 81 Atp11c ENSRNOG00000003472 ENSRNOT00000051319 1 1 1 80 X 143395311 143395331 ACAACTCAGGAAGTTGATGGA 59 143392764 143395270 CTCCTCCCGGTTCTTATCTG 59 NA Rattus norvegicus 81 RGD1307262 ENSRNOG00000016973 ENSRNOT00000046311 2 1 1 80 1 46322904 46322923 GGTTCTCTTTATGCCTGGTG 59 46303338 46322862 GTCCTTCATGCTGTGAACTC 59 NA Rattus norvegicus 81 RGD1307262 ENSRNOG00000016973 ENSRNOT00000046311 3 1 1 80 1 46322900 46322918 TCTTTATGCCTGGTGTGGA 59 46303333 46322857 CGAAAGTCCTTCATGCTGTG 60 NA Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528 1 1 2 81 1 21853411 21853429 GTGAAGCTGACCTAGAGGA 58 21852969 21852987 TCAAACTTGACAGGCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528,ENSRNOT00000089196 2 2 2 87 1 21853793 21853811 GGAAATGCTGTGAGGAGTG 59 21853594 21853612 GTGTCTTCCAGTCGGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 3 2 2 80 2 30362244 30362986 GCTCCATTGAAACAGTGGA 58 30363030 30363048 GATGGTAGCTGGGTAAACG 58 NA Rattus norvegicus 81 Ctag2 ENSRNOG00000012560 ENSRNOT00000016754 3 1 1 81 X 148422460 148422639 ATTCTCACTGTTAGGTGGAC 57 148422682 148422701 CAAGTGAAAGGTGGTCTAGG 58 NA Rattus norvegicus 81 RGD1562550 ENSRNOG00000027263 ENSRNOT00000037659 3 1 1 90 2 52362526 52362545 TGCAGAAGTTCTCTTAGCTG 58 52362598 52364842 TAAAGCGGCCTGTAAAGAG 58 NA Rattus norvegicus 81 Cox6b1 ENSRNOG00000024309 ENSRNOT00000032026 2 1 1 98 1 89082171 89083108 AGAACTACCTGGACTTCCAC 59 89082092 89082110 AGAGGGACTTGTACACTCG 59 NA Rattus norvegicus 81 Inpp5f ENSRNOG00000020388 ENSRNOT00000027630 1 1 1 80 1 200084306 200084326 CCTATGACCTAACCAACTCAG 58 200084368 200084490 GATCATCAACCTTCTGCCA 58 NA Rattus norvegicus 81 Sra1 ENSRNOG00000018089 ENSRNOT00000024671 2 1 1 80 18 29495293 29495316 CTCTAATAGAAGACGTGCTAAGAC 59 29494640 29495256 CATCACATACCTGCTTCTTCG 59 NA Rattus norvegicus 81 Dpf1 ENSRNOG00000020687 ENSRNOT00000028091 2 1 1 80 1 87251893 87252129 TTATGGACTGTCAGAAACAGC 58 87252171 87252189 TCCTGGGAATGTCTTCCTC 58 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343,ENSRNOT00000086474,ENSRNOT00000080147 1 3 3 80 14 86152935 86152957 ATGAGTTCCTACTGGAGTATGAC 59 86151744 86152896 CGATGATCTTCTCGTACAGC 58 NA Rattus norvegicus 81 AC139873.3 ENSRNOG00000055159 ENSRNOT00000047131 2 1 1 60 3 73717369 73717393 GCAATGTCCTATGATAGATATGTGG 59 73717333 73717354 ACATGATGACCGTATAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg7 ENSRNOG00000001634 ENSRNOT00000002232 2 1 1 80 11 46848906 46851185 ATCTGACAAGCACAAAGAAGG 59 46851225 46851245 AGGTAACTCCAAAGACAACAG 58 NA Rattus norvegicus 81 AABR07070594.1 ENSRNOG00000053282 ENSRNOT00000071321 1 1 1 60 8 76239683 76239702 GGATGTGTTCAGAGACTCAG 58 76239642 76239660 AAACTTGACCTTGACCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epor ENSRNOG00000012619 ENSRNOT00000017369 3 1 1 89 8 22972745 22973123 TCTTACCAGCTCGAAGGTG 59 22972674 22972692 CAGTGAACACCAGAAACGC 60 NA Rattus norvegicus 81 Olr1309 ENSRNOG00000050335 ENSRNOT00000043206 1 1 1 60 8 43355527 43355546 CCTAACTTCCCTCACTTTCC 58 43355566 43355587 GAAATAATAGCCCACTTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k11 ENSRNOG00000020773 ENSRNOT00000028185 3 1 1 80 1 221044284 221048608 AGTCCAACAACATTCTGCTG 59 221048647 221048669 GGCCAAAGTCAGTAATCTTTAGG 60 NA Rattus norvegicus 81 Samd12 ENSRNOG00000043390 ENSRNOT00000064877 1 1 1 117 7 93193368 93279952 CATGACATAACTGGGCGAG 58 93193269 93193287 GAACCTTCAGTTGGAGCAC 59 NA Rattus norvegicus 81 Ecsit ENSRNOG00000014128 ENSRNOT00000019115 3 1 1 80 8 23086437 23086801 CCTGAGGAAGAGACAGTAGAG 59 23086377 23086397 CCTTGAATATTCCAGGTCCAG 58 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116,ENSRNOT00000078856 1 2 2 81 11 47268477 47268624 GAATGCAAAGGCTTACAATGG 59 47268667 47268685 GACTGCATCCAACTGTGTC 59 NA Rattus norvegicus 81 Rn60_X_0551.2 ENSRNOG00000028179 ENSRNOT00000050661 2 1 1 60 X 54806392 54806411 TGACATCCTCAAGAAAGCCT 59 54806351 54806369 TTCCTTCACCTCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 2 2 2 81 17 9552700 9554383 GGATCACTTCAGGTTCAATCG 59 9552639 9552657 CATGGCGATGTAGTCTGTG 58 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 3 1 1 62 X 54821364 54821383 TTTGGGAGATCAAAGCACCT 60 54821402 54822102 GGATTACTGGTATAGAGTTAACCTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC682846 ENSRNOG00000019280 ENSRNOT00000026074 3 1 1 80 1 66212202 66212324 ACTCATCAGGGAGTAGACAG 58 66212141 66212161 GTCGAAGTATTGAAAGGAAGC 57 NA Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000084171,ENSRNOT00000082017 3 2 3 60 6 2311503 2311521 GAGGAGTTGTCTAAGACGC 58 2311461 2311479 AATTGCACTGATGAGCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910899 ENSRNOG00000046328 ENSRNOT00000071676 2 1 1 60 4 1372158 1372177 TCTTCTATGGATCTGGGCTC 58 1372200 1372218 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst3 ENSRNOG00000015781 ENSRNOT00000021335 3 1 1 82 2 227772172 227814646 TGGTTCTCAACCCAATCAG 57 227772108 227772129 GTTCACAAATGTGTATGATCCC 58 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027,ENSRNOT00000074298 2 2 2 80 1 212003569 212003590 GGAGTGTGAATTAGATGCTCTG 59 212002927 212003528 ATAATCAGCTGCTCCTCGA 58 NA Rattus norvegicus 81 Mir379 ENSRNOG00000035556 ENSRNOT00000053679 1 1 1 60 6 133857712 133857731 AGGTGGTAGACTATGGAACG 59 133857750 133857772 GTTAGTGGACCATGTTACATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbp2 ENSRNOG00000021153 ENSRNOT00000028725 2 1 1 80 1 222233560 222233579 GAAACGTGTGGATCACTGTC 59 222233157 222233518 CCATCTTCTAGCTTTCCCGT 60 NA Rattus norvegicus 81 Snx19 ENSRNOG00000014719 ENSRNOT00000020041 3 1 1 80 8 31504911 31504929 CTGTGGATAGTGGTTTGCT 58 31504971 31507362 CTAACTCTGTCTCTGTTCCTG 58 NA Rattus norvegicus 81 Rn60_6_0026.1 ENSRNOG00000015559 ENSRNOT00000020833 2 1 1 60 6 2557090 2557108 CGCATCATCAAGGGAAAGG 59 2557048 2557067 CAGTGGTGTACATCTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 2 1 3 105 2 189440050 189440213 TAAACTCAAGGAGGCGGAG 59 189450000 189450018 CTCTTTGGTGCACTTCAGC 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 1 3 3 80 9 8158119 8160745 GGAACATACAACCACTGCTG 59 8160787 8160806 CAAGATAATGGCTGCCACTG 59 NA Rattus norvegicus 81 Eif2b3 ENSRNOG00000018375 ENSRNOT00000024841 1 1 1 80 5 135929001 135929021 ATCATGAAGGAAGGACTTTGC 59 135929062 135931299 CAGCAATTTGGGTACCTGTC 59 NA Rattus norvegicus 81 Them4 ENSRNOG00000020829 ENSRNOT00000028260 3 1 1 83 2 195565091 195569137 CAAACCCACTTTGTTGACTC 58 195569181 195569201 TCCTTCTTCTAAGCTTCTGGT 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 3 2 2 80 2 263476832 263476851 CTGATAAGATGTGAGGGTGC 58 263476894 263490944 TTGGCCATTGAAGAGTCTC 58 NA Rattus norvegicus 81 Slc35a4 ENSRNOG00000002908 ENSRNOT00000003878 2 1 1 66 18 29506258 29506276 GATGAAGTCAACAGTGGCG 59 29506994 29507012 GGAATCCCTTGAAGAACGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_17_0356.1 ENSRNOG00000045721 ENSRNOT00000074800 1 1 1 81 17 35435124 35435143 AATGAAGGGATTCCTTGGAC 58 35435185 35437554 TTGTCAAGCCTATAAGGTCAG 58 NA Rattus norvegicus 81 Rn60_17_0356.1 ENSRNOG00000045721 ENSRNOT00000074800 3 1 1 82 17 35435124 35435143 AATGAAGGGATTCCTTGGAC 58 35435185 35437555 ATTGTCAAGCCTATAAGGTCAG 58 NA Rattus norvegicus 81 Psbpc2 ENSRNOG00000020301 ENSRNOT00000027498 3 1 1 86 1 225690833 225692487 CTATGAAGCTAATGGCCAGAC 59 225692532 225692553 TCCTCAGGGTTTAGTAAGAAGG 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000073521 2 1 5 80 1 87708385 87861198 TCCATAAATGTAAAGAGTGCGG 59 87910951 87910970 TCTCACCAGTGTGAACACTC 60 NA Rattus norvegicus 81 Mapre3 ENSRNOG00000008961 ENSRNOT00000011874 2 1 1 80 6 26889698 26889832 CATTGTTTCGAAACAGGTCTC 58 26882917 26882936 AAGTGGAGTACACATTGACG 58 NA InUTR Rattus norvegicus 81 Ofd1 ENSRNOG00000004574 ENSRNOT00000006074 1 1 1 80 X 29579198 29581756 TTTGAATTGACCCAGAAGCTC 59 29581795 29581816 CTTTAGATTCTGTTCCCGTCTC 59 NA Rattus norvegicus 81 Ofd1 ENSRNOG00000004574 ENSRNOT00000006074 3 1 1 80 X 29600855 29600873 AATGAACGGCAAGAAGCTC 59 29600915 29601536 TGACTCTTCAATCATCCTCCG 60 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839,ENSRNOT00000064153 3 2 2 80 1 86966559 86966579 CACCTTCTACACATCACACTG 59 86966616 86968821 GAGAAGATCTTCTCTTTCATCCAG 59 NA Rattus norvegicus 81 Tiprl ENSRNOG00000003048 ENSRNOT00000004083 3 1 1 95 13 83496010 83496677 CAGGAAAGTAGGACGGAGG 59 83495933 83495951 TTCTCCAAGCAACGTTCCT 60 NA Rattus norvegicus 81 Epha6 ENSRNOG00000029184 ENSRNOT00000047310 1 1 1 80 11 42277891 42277912 TGAATGGAGTTTCTGAGTTGAG 58 42277951 42432698 GAGAAGGTGCATCTTGATCTG 59 NA Rattus norvegicus 81 Vom1r100 ENSRNOG00000055950 ENSRNOT00000085924 1 1 1 80 4 122006891 122006915 GTCACTATGACATGCCTTATATCTC 59 122006952 122008181 ATATGAGAACAGTGGCTGCT 59 NA InUTR Rattus norvegicus 81 Gpatch11 ENSRNOG00000025317 ENSRNOT00000034919 3 1 1 82 6 1418615 1418633 AACTGCAGATCCTCACTGG 59 1418673 1420080 GTCTTCTTTATCTTCATAGGCTGTC 60 NA Rattus norvegicus 81 AABR07036648.2 ENSRNOG00000050234 ENSRNOT00000072562 3 1 1 60 12 52630677 52630697 CTCAACTACTTTAAGGTGCCG 59 52630719 52630737 TTGCTTGTCTAGGAAAGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tff1 ENSRNOG00000001164 ENSRNOT00000001538 2 1 1 148 20 9893542 9895887 CCAGGAAGAAACATGTGCC 59 9893412 9893430 TCTCAATGACCAGAGGTCG 59 NA Rattus norvegicus 81 AABR07049783.3 ENSRNOG00000060798 ENSRNOT00000071106 3 1 1 81 5 137738863 137738881 CTATGACAGGTACATCGCC 58 137738799 137738818 TGTAACCATCTTGGCACAC 58 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 2 1 1 84 4 145121581 145121599 GCTCATCCTGTCCTTCCTC 60 145117684 145121536 ATCTTTGTTCTCCTGTTTGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Sema7a ENSRNOG00000007687 ENSRNOT00000010620 1 1 1 80 8 62741393 62743912 TACCTAACCACAGACAGGG 58 62743953 62743974 CATGATGTTGAAGACAAAGCTG 59 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000053241 ENSRNOT00000073787 1 1 1 60 3 73653164 73653185 TGTCATCATGTCACAGAAAGTC 59 73653125 73653143 GGCACTGAACAGATAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr2 ENSRNOG00000009822 ENSRNOT00000013025 3 1 1 91 2 182843264 182846025 AGGTCTCCAGGTCAAATCTC 59 182843192 182843210 AATGGCCTTCCCTTGAGAG 59 NA InUTR Rattus norvegicus 81 AABR07007130.2 ENSRNOG00000042665 ENSRNOT00000047645 1 1 1 80 1 282498804 282498822 TGGATCGTTCCCAGAAGAG 59 282498541 282498762 CCCAATTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 Plcb2 ENSRNOG00000058337 ENSRNOT00000078037 2 1 1 80 3 110507825 110508053 TATCTTGTTCAAGGAAGCAGTC 59 110507766 110507786 TCAAATGACAGGATGACAGGA 59 NA Rattus norvegicus 81 Olr753 ENSRNOG00000046847 ENSRNOT00000043765 2 1 1 60 3 102554057 102554076 TGTGCTATTCTTTGGACCCT 59 102554098 102554117 CACCCAAGTGATGCTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S1pr5 ENSRNOG00000020901 ENSRNOT00000028380 1 1 1 69 8 22269977 22269995 CTATGTGCTCTTCTGCGTG 59 22269926 22269944 AATCCTTGCATAGAGCGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910939 ENSRNOG00000047425 ENSRNOT00000071019 1 1 1 60 8 41394918 41394939 TGTCTGAGTTCATTCTTATGGG 58 41394960 41394978 ACAAACAAGGGACACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0586.2 ENSRNOG00000051273 ENSRNOT00000075880 1 1 1 60 X 57718283 57718303 GAGGCTGAGAATGAGTTTGAG 59 57718322 57718343 TAAGTGTCTGGATAGAAGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 1 2 2 80 6 22006612 22006633 TTTGGATCAGTTCTGTTGAAGG 59 22002626 22006571 CCAATAGACAGACCCACCA 59 NA Rattus norvegicus 81 Rn60_X_0627.1 ENSRNOG00000051124 ENSRNOT00000076365 1 1 1 60 X 62035522 62035540 ACCAGAGAAGCAGATACCT 57 62035480 62035500 GGTGCTGATTTCCTTGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000091063 1 1 3 81 6 2584742 2593685 ATAACAAGGATTCGCAAAGC 57 2593729 2593747 TCTCTTTCACAACCACCTC 57 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355,ENSRNOT00000085462 1 2 2 80 16 19047170 19047188 ACATGGTGGCAGTATTGGA 59 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 Coq10b ENSRNOG00000014456 ENSRNOT00000040461 2 1 1 84 9 61664533 61667257 TGGTAAAGGCCTCTTGTACTG 60 61667303 61667321 GGATAGCCAGGAAGACCTG 59 NA Rattus norvegicus 81 RGD1566320 ENSRNOG00000036971 ENSRNOT00000055588 1 1 1 86 3 138765177 138766039 CGAAGATGTCAGACTATGGG 58 138766086 138766106 TCGCTAAATCAGAGTCTTCAC 58 NA Rattus norvegicus 81 Dusp12 ENSRNOG00000003100 ENSRNOT00000004179 3 1 1 80 13 89264731 89264750 ATAATGAAGACCGAACAGCT 57 89264323 89264690 CTCATTCATCTTAGCCTCTGG 58 NA Rattus norvegicus 81 Prl2a1 ENSRNOG00000016463 ENSRNOT00000022093 2 1 1 80 17 38901749 38902903 TTCAGACACATCCCATAACC 57 38901688 38901706 TCACTAGGTCGTTCAGAGG 58 NA Rattus norvegicus 81 Olr714 ENSRNOG00000049728 ENSRNOT00000051799 1 1 1 60 3 78361614 78361632 TCTTCCTTTCTGTGGTCCC 59 78361572 78361591 CAAGAGCGGGTATATGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3580 ENSRNOG00000048556 ENSRNOT00000070841 3 1 1 60 X 151295661 151295683 CTGCTTGTACTTATTCTGGTGAC 60 151295623 151295647 TTACTCTACTCATACTACCCTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1238 ENSRNOG00000049454 ENSRNOT00000044272 3 1 1 60 8 42296925 42296949 TTACCACTCCTACCATCTTTATCTC 60 42296967 42296985 CTGATGTGGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cib3 ENSRNOG00000014600 ENSRNOT00000019578 3 1 1 80 16 19323531 19323549 ACTGTGTTTAGTCACGAGC 58 19323775 19326290 ATAGAACAGCCTCATGATCTC 57 NA Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 3 1 1 84 4 200721 200740 GGAAGATTTACAAGGCTGCG 60 200787 208533 TTCACCTCCACAGCTTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Lrp5 ENSRNOG00000015911 ENSRNOT00000022213 1 1 1 80 1 218891858 218891876 CGTAAGGTTCTCTTCTGGC 58 218883221 218891814 AGTCCAGTACATGTACCCA 57 NA Rattus norvegicus 81 Klf2 ENSRNOG00000014205 ENSRNOT00000019052 1 1 1 90 16 19223886 19223904 CTTGCAGCTACACCAACTG 59 19223247 19223834 TGATAAGGCTTCTCACCTGTG 60 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085,ENSRNOT00000081708 1 2 2 80 17 18032547 18032568 ACATTTCTTAAAGGGCAGAGTG 59 18032607 18037288 GTCTGCGAACCATTTCATCTC 60 NA Rattus norvegicus 81 Scd2 ENSRNOG00000046005 ENSRNOT00000075397 3 1 1 80 1 264059731 264060246 TACTGCAAGAGATCTCTGGC 59 264060289 264060307 CTCCTCCATTCTGCTGTCC 60 NA Rattus norvegicus 81 Rn60_X_0616.5 ENSRNOG00000051214 ENSRNOT00000076231 2 1 1 81 X 60970442 60970461 GCAAAGGTAGAAGAGGTCAC 58 60970503 60973697 CACATGCTTTCCAATTTCCTC 58 NA Rattus norvegicus 81 Nmt1 ENSRNOG00000002989 ENSRNOT00000004046 1 1 1 80 10 91149236 91150400 GTTTCTCTTGTGGGCTCTC 58 91150444 91150462 AGTTTCCGACTTGAGACCA 59 NA Rattus norvegicus 81 RGD1559600 ENSRNOG00000042232 ENSRNOT00000066597 3 1 1 81 1 189348263 189359693 TGGGCTACTCAAGATGCAG 60 189348200 189348219 CAGAGTCCAAGTCTCTGAGC 60 NA Rattus norvegicus 81 Exosc5 ENSRNOG00000020635 ENSRNOT00000028026 1 1 1 80 1 82459951 82461284 CTATTCTGATGCAGAGCTCCA 60 82461326 82461344 GATTCTCGGTAGAAGCGGA 59 NA Rattus norvegicus 81 Serpinb2 ENSRNOG00000002460 ENSRNOT00000003409 2 1 1 80 13 27459156 27459595 AACCAAAGGTGAAATCCCA 57 27459636 27459657 TAGATAGTATTCACCAGGACCA 58 NA Rattus norvegicus 81 Adhfe1 ENSRNOG00000007069 ENSRNOT00000009462 3 1 1 80 5 9418684 9418702 AGGGTAGCAACCCAATCAG 59 9416860 9418640 TTCTGACAGCCCTCTTCAG 59 NA Rattus norvegicus 81 Dock5 ENSRNOG00000024703 ENSRNOT00000058887 1 1 1 80 15 44517318 44517337 GTCTCAGAGTACAAGTCCGT 59 44515675 44517279 GATAGCAATGAAGACCTTGACTG 60 NA Rattus norvegicus 81 Dock5 ENSRNOG00000024703 ENSRNOT00000058887 3 1 1 80 15 44533336 44534907 AGTCCACCTTCATCAGTGAG 59 44533275 44533298 GGTTATTGAGCTTCTCTATCTCCT 60 NA Rattus norvegicus 81 AC117925.5 ENSRNOG00000058785 ENSRNOT00000082806 2 1 1 85 4 114805713 114805732 ATGTCATAAGCAAGCCACAC 59 114805780 114806101 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Gtf3c4 ENSRNOG00000054725 ENSRNOT00000088339 1 1 1 80 3 7409256 7409960 ACCCTGTTCCAGAAGATCC 59 7409194 7409214 CTCAGAAGACAGGAGAATCAC 58 NA Rattus norvegicus 81 AABR07004984.1 ENSRNOG00000049516 ENSRNOT00000075518 3 1 1 80 1 173124912 173124931 GGAGGATGGGAACTACACTG 60 173124850 173124873 AAGAGGATGACTCTAAGAACTGG 59 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 1 2 2 80 15 39883053 39886438 TAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Tuba3b ENSRNOG00000031707 ENSRNOT00000044425 2 1 1 98 4 157793805 157794056 CACTGTGGTCGATGAAGTG 59 157793725 157793745 CTGGCATAATTATTGGCTGCA 60 NA Rattus norvegicus 81 Copa ENSRNOG00000006247 ENSRNOT00000008518 3 1 1 80 13 90503585 90503604 CGACATTGACATCGACACTG 59 90503647 90503837 TCCACAAACCCATCTTCGT 59 NA Rattus norvegicus 81 AABR07017825.2 ENSRNOG00000047570 ENSRNOT00000071012 1 1 1 60 15 31436329 31436445 GGGATAAACTTCCTCCTGAGAG 60 31436463 31436484 CATGAACATCAGGTTGAGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 rno-mir-542-1 ENSRNOG00000046539 ENSRNOT00000070845 2 1 1 62 X 158588543 158588561 GGGATCATCATGTCACGAG 58 158588582 158588605 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565844 ENSRNOG00000004120 ENSRNOT00000020999 1 1 1 80 X 32496308 32496326 TGAACATGACTAGACAGCG 57 32496370 32496496 CCAGCTGAAGATTCACTGG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 2 1 1 86 1 67371550 67372157 ACATCATCCCTCCTCAGGT 60 67371482 67371500 TATGCATGAAGTCCAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 1 3 3 80 4 157246378 157246687 GAACATTCTTCCCTTTGACCA 59 157246318 157246338 GCATTGATGTAATCAGACCCT 58 NA Rattus norvegicus 81 AABR07061003.1 ENSRNOG00000038336 ENSRNOT00000031103 1 1 1 60 4 102593119 102593140 TCATCTATCAGGTTTCCAACAG 58 102593161 102593179 GACCCACTACCACTGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010,ENSRNOT00000061746 1 2 2 80 6 11026022 11049073 CAAACTATTTCACTCCTCACGAG 60 11025964 11025985 ACGAAGTGATAGATCCTGATCG 60 NA Rattus norvegicus 81 Tmigd1 ENSRNOG00000003865 ENSRNOT00000005129 3 1 1 83 10 63272100 63274510 ACAGGGAAGGACAAGTTCTG 60 63272036 63272059 GATGCTTGGATACCATAGTAAGTG 59 NA Rattus norvegicus 81 AC115420.1 ENSRNOG00000040249 ENSRNOT00000059520 1 1 1 60 4 157416910 157416929 ATTGAGGAGAAAGAGGAGGA 58 157416952 157416970 CCTCTTCCTCCTCTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Urad ENSRNOG00000050360 ENSRNOT00000074791 2 1 1 185 12 9447049 9447068 CTTTCTCTGGCTTGGAAGAC 59 9455443 9455461 GGGTCTTTAGGCTGGTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Gsx1 ENSRNOG00000000952 ENSRNOT00000001260 3 1 1 126 12 9606763 9606781 CAGTTTCACTGCATCTCCG 59 9606145 9606163 AGAGGTACATGTTGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Ms4a6c ENSRNOG00000047349 ENSRNOT00000072077 1 1 1 80 1 227673656 227676405 AAATCCTTTGGTAGATGGCAG 58 227676445 227676465 ACAGAGATGATAATGATGCCC 58 NA Rattus norvegicus 81 Il5 ENSRNOG00000008111 ENSRNOT00000010729 2 1 1 95 10 39066843 39067384 CGAGCAATGAGACGATGAG 59 39069311 39069332 GATTCTTCAGTATGTCTAGCCC 58 NA Rattus norvegicus 81 Olr36 ENSRNOG00000018078 ENSRNOT00000086011 2 1 1 64 1 164717409 164717427 CTATGTGGCTATCTGCTGC 58 164755520 164755538 GTGCAGTGTTTGTCTGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Paqr5 ENSRNOG00000014164 ENSRNOT00000018988 3 1 1 80 8 66913890 66913909 TCCATGAGTGTTACGTAGCC 60 66909378 66913849 GTTCAAGAAACCTGGAGTAGC 59 NA Rattus norvegicus 81 Klhl7 ENSRNOG00000010453 ENSRNOT00000013932 1 1 1 80 4 7535798 7537338 CTGCCACAGAAACATGGAC 59 7535736 7535757 TCTTGTCCTTTACAAACACCAG 59 NA Rattus norvegicus 81 Mgat5 ENSRNOG00000003614 ENSRNOT00000004995 2 1 1 80 13 44144886 44146982 CTTAAACCAGAAGATTGAGCCG 60 44147021 44147041 TCGATGAAAGCGTTGATTCTC 59 NA Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 2 2 2 81 1 267018932 267018952 CAGCTTCTGTAATGCCATCAC 60 267018993 267019344 CTGCTTCTTGGTGATCTTCAG 59 NA Rattus norvegicus 81 Gaa ENSRNOG00000047656 ENSRNOT00000075796 1 1 1 80 10 108398518 108398538 CTTTCCAAAGGATGTGCTGAC 60 108398575 108400774 GGATCTTTGATCATAAAGTGGAGG 59 NA Rattus norvegicus 81 Olr806 ENSRNOG00000055368 ENSRNOT00000078533 1 1 1 60 4 72222201 72222221 TACATCCAGATCATCTCCACC 59 72222243 72222261 AGGCTTTCTTTCTTCCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1117 ENSRNOG00000049455 ENSRNOT00000049758 1 1 1 60 8 17833026 17833047 TCACATCTATCTGTTGTTTCCC 58 17832987 17833006 CTGAGCTGATGTAAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak3 ENSRNOG00000052506 ENSRNOT00000079875 2 1 1 80 1 247159487 247159505 TGATGTCATGACTCGGCTG 60 247149352 247159443 GTCCTTGGAAATCCGTCCA 60 NA Rattus norvegicus 81 LOC100911727 ENSRNOG00000047206 ENSRNOT00000064178 2 1 1 80 1 75259352 75259370 CCTGATGGTGAAGACCCTG 60 75259414 75260693 TCCTTCTTCAGCTTGAGCC 60 NA Rattus norvegicus 81 Gjc3 ENSRNOG00000001329 ENSRNOT00000001797 1 1 1 60 12 19166905 19166924 GATTCCGTCTCCTGATTCTG 58 19166864 19166882 TCGTTCTCATCATTGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox30 ENSRNOG00000006098 ENSRNOT00000007978 3 1 1 85 10 31075257 31076912 AGATGCAGGAATACCTGATACTC 60 31076956 31076975 TTGCCCAAACCATAAATGCA 59 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000049464 ENSRNOT00000071633 1 1 1 80 1 258811746 258820891 ACTTCATACCGAAGGGAACAG 60 258811686 258811704 TCTCTGGGTTGGGAAACTC 59 NA Rattus norvegicus 81 R3hcc1l ENSRNOG00000051256 ENSRNOT00000081765 2 1 1 80 1 261815888 261815912 CTGATATTGACCTCAGTGAATGTG 60 261815948 261815971 GGTCTTCTGTACGAAATTCTTGAG 60 NA Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 2 2 2 80 9 119858840 119858861 CTATGAGAAGTTCATGACTGGA 57 119857203 119858802 TTATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000071273 1 1 2 105 15 18399774 18411081 GTAGAGAACCTCCATCGCT 59 18411149 18411168 GAGCTCTGAATTCCACTCTC 58 NA InUTR Rattus norvegicus 81 Plk3 ENSRNOG00000018484 ENSRNOT00000025197 2 1 1 80 5 135999634 135999653 TGTCAGCTTGGTAGAGACAG 59 135999437 135999594 CCTTCTTCAAATCCATCTCCAC 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 2 1 2 81 10 90348248 90348266 ACCGATGAAGACAGTTGGT 59 90348311 90348435 CCAGGTATCCCTTCTGAGC 59 NA Rattus norvegicus 81 Hmbox1 ENSRNOG00000013326 ENSRNOT00000038336 2 1 1 80 15 48208390 48208408 ATGTACAGAGTCCAGGAGG 58 48200096 48208346 CTCCTGCAAAGGATGACTG 58 NA Rattus norvegicus 81 Sipa1l3 ENSRNOG00000020703 ENSRNOT00000042207 1 1 1 80 1 87320491 87320510 GGGACCACATCTTTCTACAG 58 87314588 87320448 TGGTCATCACCTTTAGCCT 58 NA Rattus norvegicus 81 Wdr5 ENSRNOG00000008212 ENSRNOT00000011556 2 1 1 80 3 6068070 6068090 GGATATGGGATGTGAAGACAG 58 6068131 6071525 GATTGAAATGAACGGCTGAG 58 NA Rattus norvegicus 81 Nkx3-1 ENSRNOG00000015477 ENSRNOT00000020753 1 1 1 82 15 51065541 51065559 TAGCAGTGTGACTCTGGAG 59 51065605 51066434 AATGTGCATCTGACTCGGT 59 NA Rattus norvegicus 81 Npy5r ENSRNOG00000014172 ENSRNOT00000018976 2 1 1 81 16 24797347 24802912 CATCCCGAGGATTCTAGTATGG 60 24802952 24802972 CAGCAGCTGTATTGTTCTCTG 59 NA InUTR Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617,ENSRNOT00000000618 2 2 2 80 20 5973244 5973262 ACTCGGCTGACATAATCCA 59 5973565 5974873 AATCCAGAATCTTCAGCTCAC 58 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 3 2 2 80 12 2548508 2549052 GTCAAAGACTGCCTTACTAAAGAC 60 2548329 2548349 ATAGTGCTTGATGAAGCTGTG 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927,ENSRNOT00000077814 3 2 2 80 18 37965025 37965044 AAACATCATCCATGACCTCC 58 37963797 37964983 CAGCAGCTAGACTTTCATCC 59 NA Rattus norvegicus 81 RGD1563323 ENSRNOG00000026579 ENSRNOT00000036769 1 1 1 80 1 219883193 219883211 ACGGTACAAGACTCCATCC 59 219879124 219883150 CAGTCTCTGGTGAGTCTTGG 60 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 3 2 2 114 1 87046663 87047024 GCTTCAAGACTGTGATCGG 59 87047101 87047120 ATCTTCACAGAATGCAGCTG 59 NA Rattus norvegicus 81 Timp4 ENSRNOG00000007955 ENSRNOT00000010748 1 1 1 83 4 147161207 147161225 TCTACACGCCATTTGACTC 58 147158831 147161160 GAATCTGGCCAGTCAACAG 59 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048916 ENSRNOT00000075829 1 1 1 60 8 3639618 3639636 CTGAGTCCAAAGCTACCCA 59 3639659 3639678 GTGTAGAAAGCCAGAAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lypd4 ENSRNOG00000020098 ENSRNOT00000027226 1 1 1 80 1 81731456 81731474 TGGTACTGAAGGACTGGAG 58 81730991 81731412 GAAGAGCTTCAGCACAAGG 59 NA Rattus norvegicus 81 Lypd4 ENSRNOG00000020098 ENSRNOT00000027226 3 1 1 80 1 81731001 81731424 ATCTCTTTACTGCCTTGTGCT 60 81730941 81730960 GTTATGCAAGGACACAGCTC 59 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 3 2 2 80 17 18447484 18454069 CATTCAGATCCAGGTAATGGG 58 18447424 18447444 TCTTTACTGAGGTACAGGTGG 59 NA Rattus norvegicus 81 Egflam ENSRNOG00000012058 ENSRNOT00000016722 1 1 1 80 2 56527350 56529694 GAGCATCCAGAAGATCATCCT 60 56527290 56527308 GCGTTCTCCACATTCACAC 60 NA Rattus norvegicus 81 RGD1311458 ENSRNOG00000013721 ENSRNOT00000018473 1 1 1 80 11 60928876 60928897 CTCAGTTCTCTACAGCAATCAC 59 60926849 60928838 TTTAAGCACTGTTCTACCTGTC 58 NA Rattus norvegicus 81 Adamts16 ENSRNOG00000016812 ENSRNOT00000022790 2 1 1 80 1 35121274 35128662 ATGAATCTGGACACAACTTTGG 59 35128703 35128721 GGGACATTATGTTGCCCTC 58 NA Rattus norvegicus 81 Adamts16 ENSRNOG00000016812 ENSRNOT00000022790 3 1 1 80 1 35143231 35143249 CTGAGTACAACAGCAAGCG 59 35143291 35145017 TGCATAAGTCCTGATCTTCCA 59 NA Rattus norvegicus 81 Eef1b2l ENSRNOG00000031628 ENSRNOT00000047024 3 1 1 80 1 248212151 248212173 GATGTCAGGATGTAAGCTTTCAG 60 248212211 248213165 AGGGTGTTCTAGAGTTAGGGT 60 NA Rattus norvegicus 81 LOC685160 ENSRNOG00000032131 ENSRNOT00000049860 3 1 1 81 19 29013794 29013815 ACAACTTAGAGATGGAGAACAC 58 29013092 29013753 TGCAGATTGCTAGAGAAGGT 59 NA Rattus norvegicus 81 Rnf219 ENSRNOG00000009690 ENSRNOT00000012881 2 1 1 81 15 88659189 88659208 GAAGAACAACAGCCAATGTC 58 88656945 88659147 ACTGGTTCCTCCAATAATCTC 57 NA Rattus norvegicus 81 Otud7a ENSRNOG00000015503 ENSRNOT00000021068 1 1 1 80 1 124634542 124634560 CCTAGCCCACATACTACGG 59 124634604 124636904 GGTGCAAATGCTTCTCCAC 60 NA Rattus norvegicus 81 Scara5 ENSRNOG00000014398 ENSRNOT00000019487 1 1 1 80 15 49083580 49083598 CAACGGCTCCATCTTTGAG 59 49083642 49101764 TTGTGACATGGACCATCCT 59 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 2 2 2 80 13 89587354 89588671 GAAAGACATGATACTGTCAGCAG 60 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 Gzf1 ENSRNOG00000004735 ENSRNOT00000006287 1 1 1 80 3 143007497 143009948 CCACCTGAGAGTTCATACAG 58 143009991 143010009 ATCAGCATGTGGTTCTGAG 58 NA Rattus norvegicus 81 Slc13a3 ENSRNOG00000019118 ENSRNOT00000025843 2 1 1 80 3 162100006 162104415 TTTGACTTCAAAGCTCCCA 57 162099944 162099962 GATATTCCAGGGCACTGTC 58 NA Rattus norvegicus 81 P2rx5 ENSRNOG00000019208 ENSRNOT00000026156 3 1 1 81 10 59731221 59731505 AGTTCAACTTCTCCAAAGCC 58 59731548 59731567 AGATTTGTGGAGCTGAAGTG 58 NA Rattus norvegicus 81 Gem ENSRNOG00000015160 ENSRNOT00000020826 1 1 1 86 5 25350897 25350916 GGCAGACAGAAGACATTCCT 60 25350964 25352333 CTCTCCCTTCTGACACAGAC 60 NA Rattus norvegicus 81 RGD1303003 ENSRNOG00000001211 ENSRNOT00000001609 3 1 1 172 20 11245270 11246604 AGAAGGAAAGCAGGAACGT 59 11249749 11249768 GTTAACCTTGCAGTCCTTCC 59 NA Rattus norvegicus 81 Espl1 ENSRNOG00000012835 ENSRNOT00000017314 3 1 1 80 7 143917363 143917381 TGTACCCTGATACAGAGGC 58 143917423 143918919 TAGAAAGATCAATGGGTGCAG 58 NA Rattus norvegicus 81 Olr722 ENSRNOG00000006669 ENSRNOT00000008715 1 1 1 60 3 78748575 78748595 CTCTTGGACTCTTTGTTGCAG 60 78748614 78748635 AGAAGAAGGAAGTTTAGCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 2 4 4 80 10 82078730 82080621 TCCTATGCCTTACAGGTGAC 59 82078669 82078690 CACGGCTATGATATTAGACTCC 58 NA Rattus norvegicus 81 Mir653 ENSRNOG00000036462 ENSRNOT00000054572 2 1 1 60 4 28658933 28658954 ACATTCTCTACTGAACCAAGCT 60 28658894 28658915 CTTGCAATAGTGAAACAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntnap5c ENSRNOG00000043185 ENSRNOT00000067198 2 1 1 80 13 7098335 7136987 GCAATATTACTGAGGACAAGATCTG 60 7137023 7137043 CAGCATTGGAAATCTGTACCC 59 NA Rattus norvegicus 81 RGD1566085 ENSRNOG00000049970 ENSRNOT00000051678 2 1 1 80 20 10900521 10900540 GAACTCCAAGCTCATGTACG 59 10898136 10898831 GGAAAGGGACAGAACATGGA 60 NA Rattus norvegicus 81 Olr1217 ENSRNOG00000047328 ENSRNOT00000042784 1 1 1 60 8 40765317 40765337 GTCACTATGTCTCATCAGGTC 58 40765357 40765377 CAAAGCCCATCACATAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps54 ENSRNOG00000007125 ENSRNOT00000010264 2 1 1 80 14 106153718 106154845 AAGGAGCCCACAGTTACAG 59 106154887 106154907 AGGATCATTTAATGCTGCTGG 59 NA Rattus norvegicus 81 Plxnd1 ENSRNOG00000025209 ENSRNOT00000032158 3 1 1 80 4 147856126 147856146 CAAACAGATCCAGGACATGAC 59 147855574 147856085 TTCTGGTATTTCCGGGACTC 59 NA Rattus norvegicus 81 AABR07054522.2 ENSRNOG00000058577 ENSRNOT00000073941 1 1 1 88 3 158964365 158964383 TCCTCAGTGATTACACCCA 58 158964551 158964569 AAGTAGAGCTGGGTCATGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1397 ENSRNOG00000029739 ENSRNOT00000048253 2 1 1 60 10 34727560 34727580 TGTAGCACTAATTCTAGGCAC 58 34727602 34727620 TGACTTGATCTTCAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 3 1 2 91 12 9990051 9990069 GAGGTCAAGGAGGACTCAC 59 9988108 9988425 ACAATCATTGCGCTCTTGC 60 NA Rattus norvegicus 81 RGD1562492 ENSRNOG00000037219 ENSRNOT00000051280 3 1 1 80 1 101271251 101274674 CGTTGAGAGCAATGTCTCC 59 101274718 101274736 ATGTCTTTAGGAGGCCAGG 59 NA Rattus norvegicus 81 Adamts8 ENSRNOG00000005574 ENSRNOT00000007358 1 1 1 80 8 32018936 32018957 CTTCGTGGAAATACTTCTGGTG 59 32018997 32026321 ACTGTGAGGATGTGGTTCTG 60 NA Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 3 2 2 81 2 52310622 52313173 TATCTACCAACAGGCCACG 59 52313218 52313236 TGTCAGATGATGGGACAGG 59 NA Rattus norvegicus 81 Fam173a ENSRNOG00000019684 ENSRNOT00000026641 1 1 1 194 10 15160506 15160898 GATCTCTGGAAGGTGAGCC 60 15160176 15160194 ATAGGCCCAAACTCTGTCG 60 NA Rattus norvegicus 81 Tmem170b ENSRNOG00000031495 ENSRNOT00000046157 2 1 1 82 17 22863922 22863940 GATGATCAACCTGTCGGTG 58 22839510 22863877 AATACCACATCTCCGTGAGG 59 NA Rattus norvegicus 81 LOC102548013 ENSRNOG00000023089 ENSRNOT00000050748 2 1 1 103 9 50814204 50814223 TCCAAATTCCTCGAGTAGCA 59 50813531 50814142 GTGGGATAATGTATTAAAGGCCC 59 NA Rattus norvegicus 81 Olr731 ENSRNOG00000006819 ENSRNOT00000008924 1 1 1 60 3 78941876 78941895 CCTCCTACATTGTCATCCTG 58 78941835 78941853 GCTTTCCGTCTTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998,ENSRNOT00000067442 2 2 2 124 7 115907977 115908174 GAGAACGACACCAGGTCTC 60 115907871 115907890 AGTGTCTTGGAACCTCTGTG 60 NA InUTR Rattus norvegicus 81 AABR07057961.1 ENSRNOG00000048334 ENSRNOT00000073584 3 1 1 60 7 96195956 96195976 ACTATGAAAGCCAGAAGATCC 58 96195996 96196016 GGCATTTGTGTTCTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trat1 ENSRNOG00000029564 ENSRNOT00000059924 1 1 1 80 11 54630101 54630120 CCCACTATGTAGAGAAGCAG 57 54638263 54646671 CATAATATTCTTCAGCCCTTGG 57 NA Rattus norvegicus 81 Trat1 ENSRNOG00000029564 ENSRNOT00000059924 2 1 1 81 11 54630100 54630119 TCCCACTATGTAGAGAAGCA 58 54638263 54646671 CATAATATTCTTCAGCCCTTGG 57 NA Rattus norvegicus 81 Ugt8 ENSRNOG00000009345 ENSRNOT00000012676 2 1 1 80 2 229646619 229650537 ACAATCCCAGTTATCGGCA 59 229646557 229646575 TAGTCCGATTGACAGGGTG 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 3 1 2 120 10 15242579 15242597 CAACGTGGACTTTGACCTG 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 R3hdm1 ENSRNOG00000004099 ENSRNOT00000005372 3 1 1 80 13 44893502 44893522 AGGTGAAGACTTTCAGAAACG 59 44893562 44893677 CGTATTCTCATCTGGCTATCG 58 NA Rattus norvegicus 81 Rabep2 ENSRNOG00000018462 ENSRNOT00000025043 3 1 1 80 1 197848372 197848474 TGATCCAAGAGATCCAGAGAC 59 197848515 197848534 GGTTCCTTGATAGTGGAAGC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 2 3 3 80 12 7530914 7530932 ATGACAAGGATCTGGTGGA 58 7530973 7531340 GATCTGCTATATCATCCCAGTG 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 3 3 3 80 12 7530915 7530933 TGACAAGGATCTGGTGGAG 59 7530973 7531341 AGATCTGCTATATCATCCCAGTG 59 NA Rattus norvegicus 81 Mettl1 ENSRNOG00000047895 ENSRNOT00000075544 2 1 1 80 7 70331841 70331859 AACTGCACGAATGGATGTG 59 70331901 70332085 GGTCTTCACTTAGCTCTTCCA 60 NA Rattus norvegicus 81 Prss16 ENSRNOG00000057865 ENSRNOT00000086540 2 1 1 80 17 44560685 44562546 GTTTGGCTTCTATGTCACCT 58 44562589 44562607 CACAGATCTAGCTGGAAGG 57 NA Rattus norvegicus 81 Olr1460 ENSRNOG00000046759 ENSRNOT00000040720 3 1 1 60 10 44805339 44805357 TCTACTTGCTCCTCTCACC 58 44805381 44805399 ACACAAAGCTTCCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911479 ENSRNOG00000046634 ENSRNOT00000072854 3 1 1 60 10 44933645 44933663 CACCTTCCTCTTCACAGTC 58 44933686 44933705 TGTGATGTTGCCTATGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912263 ENSRNOG00000049014 ENSRNOT00000071400 2 1 1 81 1 71342324 71342342 AAGGAGAACAGAGTGAGGC 59 71341368 71342281 AGATTATGGACCACTTCTGGT 59 NA Rattus norvegicus 81 Idh3B ENSRNOG00000007316 ENSRNOT00000009681 3 1 1 80 3 122810728 122810842 CTCTGGAACATGAGAGTGC 58 122810666 122810685 ACTTTGCAATCCTCTGAGAC 58 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076353 1 1 4 60 19 758387 759994 CACAGCCAAGAAGTCAGGA 60 760015 760036 TCTATCCAGTTCTTCCTGAACG 60 NA DesignNoJunction Rattus norvegicus 81 Asxl2 ENSRNOG00000011908 ENSRNOT00000015827 2 1 1 81 6 27907465 27909047 AGTTACTATGGTCAGAGTTCTGG 59 27909085 27909106 TATTTGCTTTGGGATCACTTGG 59 NA Rattus norvegicus 81 Robo3 ENSRNOG00000030016 ENSRNOT00000064141 2 1 1 80 8 39904347 39904366 ACGTGTCTTTCCAATGTGAG 59 39902585 39904304 AAAGCAAGACTTGACTCCC 58 NA Rattus norvegicus 81 Slc35d3 ENSRNOG00000012311 ENSRNOT00000016400 2 1 1 238 1 15301199 15301217 CTTGTCACCATGCTCATCG 59 15300114 15300132 ACATATTGTGCGGTGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1564712 ENSRNOG00000043158 ENSRNOT00000064226 2 1 1 89 4 79326536 79349835 TAATGCAAAGGTCAACCACC 59 79326466 79326484 GATTGGAGTTCCGGTAGGG 60 NA Rattus norvegicus 81 Rn60_X_0632.1 ENSRNOG00000051145 ENSRNOT00000076869 3 1 1 60 X 62518962 62518980 GCTTCAGCAATGTGTTCTC 57 62519001 62519022 AAACGCACGGTATAAGTATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 3 2 2 80 18 29502891 29503075 GAGCTAAGTGCTTTGCAGTC 60 29502830 29502849 CAATACTGCTCTTCCCTGGT 60 NA Rattus norvegicus 81 Lgalsl ENSRNOG00000005464 ENSRNOT00000008274 3 1 1 81 14 105054353 105054519 TTCCCACGACTGATAGTTCC 59 105054291 105054311 CGATGCCCATCACTAATACCT 60 NA Rattus norvegicus 81 Ubr5 ENSRNOG00000006816 ENSRNOT00000009115 1 1 1 80 7 76820461 76820569 ATAAAGACCCTCTGAGTGCC 59 76820400 76820418 TGCCACTTTGCTGATTGAG 59 NA Rattus norvegicus 81 B3galt1 ENSRNOG00000007625 ENSRNOT00000010018 2 1 1 86 3 54253987 54264681 TGTGGTAATGAGTTCTGAGGA 59 54264728 54264747 TGTGGCATCATGGAATTCAC 59 NA InUTR Rattus norvegicus 81 B3galt1 ENSRNOG00000007625 ENSRNOT00000010018 3 1 1 87 3 54253986 54264680 CTGTGGTAATGAGTTCTGAGG 58 54264728 54264747 TGTGGCATCATGGAATTCAC 59 NA InUTR Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 3 2 2 80 9 61922577 61922597 TAGAGATTGCACAAGATGGAG 58 61916075 61922535 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 2 2 2 123 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571936 21571954 AAGTCCAAGTTTGGCAACC 59 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197,ENSRNOT00000061780 1 2 2 80 5 16995025 16995045 AAGTCTTTGCCTACAAGTGTG 59 16989128 16994986 CACCAACTTCTTCTCTAACCTG 59 NA Rattus norvegicus 81 Dock8 ENSRNOG00000015894 ENSRNOT00000015668 2 1 1 80 1 243113975 243115747 TCTTCCTTGCCCTATAAGCAG 60 243115787 243115807 CATGATCCACAGAAAGCAGAC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000003263 ENSRNOT00000004354 1 1 1 60 13 99216206 99216421 CCCTTATCGATTCTAGGCTC 57 99216444 99216462 GTCACATCGAAGACCTTCC 58 NA DesignRelaxed Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 3 2 2 90 2 94693892 94694168 AAAGACATTCCCTGGTGCA 60 94693820 94693839 TTTATTCCAACACTGGCTGC 59 NA Rattus norvegicus 81 Prmt2 ENSRNOG00000001297 ENSRNOT00000050531 2 1 1 80 20 13196885 13200034 GGACTCTGAAACTTCACCTG 58 13200077 13200095 CCTTGTTCTGCAGGATGAC 59 NA Rattus norvegicus 81 Gfra2 ENSRNOG00000014010 ENSRNOT00000019222 1 1 1 81 15 52636395 52636413 CCTACCGGACAATCACCAG 60 52636455 52637179 ATATCAAACCCAATCATGCCAG 59 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 3 1 1 110 10 103870585 103873080 GAGGTGACCCGGATAAGTG 60 103870493 103870511 AGATATTGGCTCCGAACGA 59 NA DesignNoJunction Rattus norvegicus 81 RGD1359334 ENSRNOG00000021656 ENSRNOT00000064238 3 1 1 81 2 196414477 196414495 GAAACGTGTCAGGATTGGC 60 196412052 196414434 GGTTCTTTCTATTGGTTGCGT 59 NA Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 1 2 2 80 14 108906186 108911071 GGGTATTTGTAAAGATGAGCCC 59 108911112 108911130 TGCAAGAGAAACCATGCAC 59 NA Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000075866,ENSRNOT00000065194 1 2 2 60 X 63165740 63165758 GAACCGTAGACATTGTGGA 57 63165698 63165716 GGATCAAGCAGTTCAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000010377 2 1 2 90 4 78074720 78075372 CTCTTTGGGATTCTCAGTGG 58 78074649 78074668 AGATGACATCTTCTCCTGGG 59 NA Rattus norvegicus 81 Myo1b ENSRNOG00000048152 ENSRNOT00000068433 2 1 1 80 9 54611584 54611603 TGCCCATTTATTCACCAGAG 58 54611645 54637751 ACAAAGCAAAGATGTGAGGG 59 NA Rattus norvegicus 81 Mageb16 ENSRNOG00000029408 ENSRNOT00000042568 2 1 1 117 X 47009348 47024046 ATCAAACAGTGAGCTGTTGC 60 46979157 46979180 GCATATTCTGGATTCTTCTGAGAC 60 NA InUTR Rattus norvegicus 81 Olig3 ENSRNOG00000012057 ENSRNOT00000016048 1 1 1 60 1 14798221 14798241 TCTAGCCAGAAACTACATCCT 58 14798262 14798281 AACCAACCTCTTCATCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr311 ENSRNOG00000050359 ENSRNOT00000041052 2 1 1 60 1 213375016 213375035 GCAACATTGTGATCATTGCT 58 213375058 213375076 AAGTACATGGGACTGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr311 ENSRNOG00000050359 ENSRNOT00000041052 3 1 1 60 1 213374955 213374979 TCTAGTCTAAGACTTCTCTTGACAG 59 213374994 213375015 CCATTAGAGCCATTGTGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5l ENSRNOG00000028884 ENSRNOT00000050878 3 1 1 85 8 49220670 49221949 ACAGTTAAGGAAGCTGTGC 58 49220603 49220622 CCACGTTTGCCTATGATCTC 59 NA Rattus norvegicus 81 Mir3547 ENSRNOG00000047763 ENSRNOT00000071303 1 1 1 60 10 14603222 14603240 ACTTCCAAGGTGGGAAGAG 59 14603180 14603200 TCAAGAATAGTCCTCACATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6327 ENSRNOG00000050007 ENSRNOT00000072658 1 1 1 60 10 68977685 68977704 ATGGTAGACTGCGATGTCTG 60 68977644 68977662 ATGGATCTACAGTCCGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccna1 ENSRNOG00000014052 ENSRNOT00000040002 1 1 1 80 2 144462273 144462292 TTTCCTGCATGTCTGTTCTG 59 144461126 144462231 TCTCTTCGTATTTCGAAGCC 58 NA Rattus norvegicus 81 Olr395 ENSRNOG00000048909 ENSRNOT00000045037 3 1 1 60 3 15689013 15689034 ACTATGTCTGAGTTCATCCTCC 59 15689053 15689073 AGTACATGCCTTGTTCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000086937,ENSRNOT00000077991 3 4 9 81 20 2083547 2083568 AAAGAATCCAAAGACCCTAGGA 59 2079783 2083509 GTTGTAATTCTGGTCACATCAGG 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 3 2 9 85 20 2083047 2083515 AAGGATCCTGAGGTTTGGTG 60 2082981 2082999 AGAGTGCTTTGCTCTCCTC 59 NA Rattus norvegicus 81 S100a1 ENSRNOG00000012410 ENSRNOT00000017000 2 1 1 83 2 189903129 189903149 GGGACAAATATAAGCTGAGCA 58 189900798 189903084 CATCCTTCTGGACATCCAG 57 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 1 2 2 80 8 48725104 48725123 AGTTCAGGCATTGAGATGCT 60 48724446 48725062 GACCACAAACTTGATCCCTG 59 NA Rattus norvegicus 81 Tmem39a ENSRNOG00000003075 ENSRNOT00000048738 2 1 1 80 11 64729632 64729651 ACGTTCTCTTCAATTCCCTC 58 64728828 64729592 CGTAATACTGGGTACTCTTCAC 58 NA Rattus norvegicus 81 Tmem39a ENSRNOG00000003075 ENSRNOT00000048738 3 1 1 80 11 64733779 64733797 GTGCTTTGTTGGACCTTGG 60 64729920 64733735 AACACCAAACGGATAGCCA 60 NA Rattus norvegicus 81 Fhl5 ENSRNOG00000007680 ENSRNOT00000046595 3 1 1 96 5 39574960 39576625 ACCATCATGCCAGGTTCTC 60 39574882 39574900 TGGTTCCTATTGGCTGTCG 60 NA Rattus norvegicus 81 Mageb4 ENSRNOG00000022806 ENSRNOT00000004132 1 1 1 131 X 61104500 61104637 GAAACCTGATTCCTGCCTG 59 61104387 61104405 CTGAACTTCTGGGACCTCC 59 NA InUTR Rattus norvegicus 81 Mageb4 ENSRNOG00000022806 ENSRNOT00000004132 2 1 1 132 X 61104501 61104638 GGAAACCTGATTCCTGCCT 60 61104387 61104405 CTGAACTTCTGGGACCTCC 59 NA InUTR Rattus norvegicus 81 LOC100912474 ENSRNOG00000045635 ENSRNOT00000071521 3 1 1 60 1 103682623 103682641 TTTCACTCCGTTCACATCC 58 103682581 103682599 GGTAAGCAAGTGTGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl6 ENSRNOG00000025497 ENSRNOT00000035199 2 1 1 83 7 117603481 117603579 ATTCCATGGTCGAGTCCAC 60 117603416 117603434 AACTGTAGGTCAGCCACAG 59 NA Rattus norvegicus 81 Slc36a2 ENSRNOG00000011892 ENSRNOT00000016440 2 1 1 81 10 40508245 40509005 TACATCATCCAGGGAATTCCA 59 40508184 40508202 CTGTTCCAAAGAAGAGCGG 59 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 3 2 2 81 7 116421169 116422136 GTGTGCAGAAAGAGCTCAG 59 116421106 116421124 GGTAGCAGTTGATGAGCAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 3 2 2 81 13 47296224 47296244 GCAAATGTTCACGATGTTCAG 59 47294582 47296181 AACATACCCTTTCGCATCC 58 NA Rattus norvegicus 81 Ebf3 ENSRNOG00000016102 ENSRNOT00000021702 1 1 1 80 1 209554140 209554158 GTTGAAGTGACCCTCTCCT 59 209535733 209554098 CTCATTAAGGGCAGTGTAGAC 58 NA Rattus norvegicus 81 Rn5s ENSRNOG00000050259 ENSRNOT00000073261 3 1 1 81 12 1510497 1510515 CTACAGCCATACCACCCTG 60 1510434 1510452 ATCCACGTACTAAGCATGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 2 3 3 80 17 47320875 47321907 AAGAAACGGGACAGTTTGC 59 47321951 47321969 CTTAACCGCATCATCCTCG 59 NA Rattus norvegicus 81 Pi16 ENSRNOG00000000525 ENSRNOT00000000632 1 1 1 81 20 6926754 6926778 CGAGGAGCATGAATATTACAATCTC 60 6926815 6930007 CCACACTACCTGAGTGTAGTG 60 NA Rattus norvegicus 81 Pi16 ENSRNOG00000000525 ENSRNOT00000000632 3 1 1 86 20 6926754 6926778 CGAGGAGCATGAATATTACAATCTC 60 6926822 6930012 TTGCTCCACACTACCTGAG 59 NA Rattus norvegicus 81 Rn60_19_0521.1 ENSRNOG00000057215 ENSRNOT00000086367 1 1 1 60 19 41207913 41207931 ACATTCACAAGTGCCTCCA 60 41207871 41207889 TCTTTGAGTGCCCAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl9 ENSRNOG00000025940 ENSRNOT00000039186 3 1 1 82 1 190985347 190990874 GAAGAAATACAGAGTGCTTGGT 59 190990916 190990935 CCAGCAGATTTAAGCAGCTG 60 NA Rattus norvegicus 81 Nox3 ENSRNOG00000016490 ENSRNOT00000022148 1 1 1 80 1 44570289 44570307 AGTGAACAAGGGAAGGCTC 60 44566872 44570246 AGCTATGTGAATTGCCTGGT 60 NA Rattus norvegicus 81 Nox3 ENSRNOG00000016490 ENSRNOT00000022148 2 1 1 80 1 44566873 44570249 AATACCAGGCAATTCACATAGC 59 44566814 44566837 CATAGAAGGTCTTCTGCTTTAAGC 60 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 3 2 2 80 8 48668967 48670198 CTGGAATTCAAGAGTATTCGGG 59 48668908 48668928 GATAATGGCACTGAACTCCTG 59 NA Rattus norvegicus 81 Mycl ENSRNOG00000014259 ENSRNOT00000019101 1 1 1 135 5 140693251 140693269 AGTCTGGAAGCCAGTAACC 59 140696259 140696277 GTCTCTTCTCCACCGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 B3gnt2 ENSRNOG00000009267 ENSRNOT00000012286 3 1 1 126 14 107594856 107616252 CCCTAGACAAGATATGAGAAATGAG 59 107594754 107594773 TTCTTGTCTTGGCTACTGCT 59 NA InUTR Rattus norvegicus 81 Lmod3 ENSRNOG00000032443 ENSRNOT00000047453 1 1 1 84 4 129618190 129618209 GATGAACGAGTTCCTGTCAG 58 129614603 129614621 TGCTTGCAATGCCTTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 3 1 1 72 19 25947328 25948685 GAGAGCAGCATATTGCAGAG 59 25948720 25948738 TCTCGCTTCTGCTTTCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 3 2 2 80 4 79977098 79977117 CTTCGTTTGGAACTCTGAGG 59 79956753 79977056 CCAGATTAACTGTTCTCCCG 58 NA Rattus norvegicus 81 Spatc1l ENSRNOG00000045929 ENSRNOT00000074268 3 1 1 82 20 12831251 12831271 ACCTAAGAAGGTGTGCTTCTC 60 12826865 12831212 TCTGGATCTCATTGAGGTAATAGG 59 NA Rattus norvegicus 81 Tmem135 ENSRNOG00000016815 ENSRNOT00000022578 3 1 1 80 1 152891475 152891494 TCCCTATTTCCCTCAAGCAG 59 152890654 152891433 TGAACTTCCATAACAGCTGC 59 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464,ENSRNOT00000017472 1 2 2 80 4 157233507 157233525 TGGAGAAAGCAAAGCAGGA 60 157233567 157234000 CTTCTCCAAGCATCTTAGCAG 59 NA Rattus norvegicus 81 Lgals4 ENSRNOG00000020338 ENSRNOT00000041205 1 1 1 80 1 87021800 87023960 TCTGAGCACTACAAGGTCG 59 87024004 87024022 GTGGGTGACCATCTGTAGG 60 NA Rattus norvegicus 81 Bcr ENSRNOG00000001304 ENSRNOT00000001766 3 1 1 80 20 14423750 14426131 TGATGTCAATAACAAGGACGTG 59 14423691 14423709 AAGTAGAGCTTCAACGTGC 58 NA Rattus norvegicus 81 Wee2 ENSRNOG00000026446 ENSRNOT00000036398 2 1 1 80 4 68613739 68613759 CCTTCAATCAAAGGGCAAGAG 60 68616320 68617718 AGCCAATGAATGGCTTTGC 60 NA Rattus norvegicus 81 Nfs1 ENSRNOG00000045686 ENSRNOT00000072945 1 1 1 80 3 151676382 151682151 CAACATAGCAATTAAGGGAGTGG 60 151676324 151676342 CACTTGTGTTCTGTCTGCG 60 NA Rattus norvegicus 81 Dppa3 ENSRNOG00000022950 ENSRNOT00000031353 1 1 1 80 4 155439993 155440471 AAGATTTGTTCGGATTGAGCAG 60 155440742 155440761 GTGCAGAGACATCTGAATGG 59 NA Rattus norvegicus 81 Stk31 ENSRNOG00000057554 ENSRNOT00000086307 2 1 1 80 4 79111345 79112443 AGAGGGAGGAATATGAGAAACTG 60 79112478 79112501 ATCCTATTTCAGGATACAGCAGAG 60 NA Rattus norvegicus 81 Mtif3 ENSRNOG00000047329 ENSRNOT00000075162 1 1 1 96 12 9855659 9855680 ACAGATTCAACAGTGGATTGAG 59 9855735 9856651 TATCTCATCCATCTCACTCCC 58 NA Rattus norvegicus 81 LOC102551235 ENSRNOG00000027393 ENSRNOT00000036231 2 1 1 60 3 3700176 3700197 GAATACATCTCAGACAGAAGGG 58 3700137 3700156 CTTCAGAAGGTGTAGACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 2 2 2 82 4 157355825 157355958 TACACCACCAATAAGGTGCA 59 157355762 157355780 ACGAAGTTCCCTGATGGTG 60 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 2 2 2 86 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494481 42494499 CTTCGTACATGTGAGGGCT 60 NA Rattus norvegicus 81 Jam3 ENSRNOG00000009149 ENSRNOT00000012247 2 1 1 89 8 28148509 28148528 CAGCAGTAAACAGGATGGAG 58 28148067 28148375 CTGAAGTCACCCTCTTCAC 58 NA Rattus norvegicus 81 Vwa9 ENSRNOG00000012469 ENSRNOT00000016798 1 1 1 80 8 70460579 70460600 GACATAGCTGATATTTCCAGCC 59 70460639 70463118 CTCGTCACCTTCTTTGTTGAG 59 NA Rattus norvegicus 81 LOC679748 ENSRNOG00000034106 ENSRNOT00000047079 3 1 1 74 1 78686713 78686731 CAACTACAGCAAGCTGCTG 60 78686657 78686676 TAGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 1 2 4 80 7 116744873 116744980 TACTCTTTCACTGGTACGACTC 59 116745021 116745039 ACAGTACACTGCCCTTCTC 59 NA Rattus norvegicus 81 Mcrs1 ENSRNOG00000054838 ENSRNOT00000082470 1 1 1 80 7 140917200 140917218 GGACAGAAACGAGCTTCCT 60 140916841 140917159 CTTCTTCCTCTTGATGAACCTG 59 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699,ENSRNOT00000043971 1 2 2 80 19 25061430 25061597 ACTATATCAAGGCTGTGGTG 57 25061640 25061658 TGGCATTCATGTCTTTCCA 57 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699,ENSRNOT00000043971 2 2 2 80 19 25061431 25061598 CTATATCAAGGCTGTGGTGG 58 25061641 25061659 GTGGCATTCATGTCTTTCC 57 NA Rattus norvegicus 81 Vom1r53 ENSRNOG00000049902 ENSRNOT00000038977 1 1 1 60 1 66398477 66398496 CATTGGCTGATTACCATGTC 57 66398519 66398537 CAAAGGGACTGAGTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbp3 ENSRNOG00000004629 ENSRNOT00000006531 2 1 1 80 6 86812583 86814269 AAGGTTATCAGAGGATGGGA 58 86812522 86812541 CCATTCTGGTTCAATCTCCA 58 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792,ENSRNOT00000017243 2 2 2 95 8 123344460 123344480 GCATCTCATGGGTTCTATGAG 58 123341182 123344403 CAATCCTGGGTAAACGGTG 59 NA Rattus norvegicus 81 Atp6v1a ENSRNOG00000001992 ENSRNOT00000002727 1 1 1 80 11 61570931 61570949 TGAGGACCAAAGCTAAGGA 58 61570993 61579091 CTAAAGACGCCTTTCCCAC 59 NA Rattus norvegicus 81 Atp1a4 ENSRNOG00000032378 ENSRNOT00000064601 1 1 1 80 13 90623185 90623204 ATCTATGATCGACCCTCCTC 58 90618835 90623145 ACCATGATTACCTTAATCCCTG 58 NA Rattus norvegicus 81 Ccdc58 ENSRNOG00000031653 ENSRNOT00000042208 1 1 1 80 11 67607779 67607797 TTCCAACAGCTTCCTTTGC 59 67605626 67607736 CATGAGCTGCCATCAAAGAC 60 NA Rattus norvegicus 81 Ccdc58 ENSRNOG00000031653 ENSRNOT00000042208 3 1 1 80 11 67605631 67607742 ATATGAGTCTTTGATGGCAGC 59 67605571 67605591 TTTACTACTGCTGAGGTCTGG 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 1 2 2 84 8 70726749 70726767 CCTTAGCTGTGTAGCTGTG 58 70726814 70728711 GTCGATTTCCTTGGAATCCT 58 NA Rattus norvegicus 81 RGD1565785 ENSRNOG00000003748 ENSRNOT00000004977 3 1 1 89 X 54390859 54408054 CTGGTGAAGAATGCTGTCAG 59 54408103 54408124 ACCGGTTCATTATAAGATGCAC 59 NA InUTR Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 1 3 3 80 20 2096797 2096815 GCCAGAGAAGAAGGTGGAG 60 2096857 2097247 ATACAGCAGCATTTCGATGAG 59 NA Rattus norvegicus 81 Olr288 ENSRNOG00000021485 ENSRNOT00000029171 3 1 1 60 1 212679456 212679479 GAGAACTTGGTCATTATCACAGTC 60 212679419 212679437 GGTACATAGGCTTGTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 2 2 2 80 11 61467130 61468657 AACATCTATCTGCATGTCCAG 58 61467070 61467090 AGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Slc27a3 ENSRNOG00000015421 ENSRNOT00000020815 2 1 1 88 2 189761738 189761757 TCTTGTACAGCTCTACACCC 59 189761029 189761687 TAGTGGCCAAAGACTCCTG 59 NA Rattus norvegicus 81 Olr401 ENSRNOG00000045719 ENSRNOT00000040288 2 1 1 60 3 15931284 15931304 TTGGGCTATATCTAGTTCCCT 58 15931326 15931344 ACAGCCACAATGACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 2 2 2 80 X 62840330 62840348 CCTGAAGCTGATGACTGGA 59 62836931 62840289 CTTGATCTTGTCCTGTTTAGCC 59 NA Rattus norvegicus 81 Tmem185a ENSRNOG00000011047 ENSRNOT00000066919 2 1 1 80 8 69572096 69576467 CCTGGCTTGTTGTATGTGTC 59 69572035 69572056 CGGACCAAACGATGTAATAGAG 59 NA Rattus norvegicus 81 Ascl1 ENSRNOG00000004294 ENSRNOT00000005674 1 1 1 156 7 28038836 28039194 GACTTTGGAAGCAGGATGG 59 28038698 28038716 AATCTAAGTCCTGGTGCCC 59 NA InUTR Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000087573 1 1 2 80 1 220047524 220047542 CCTTTGTACACATGGAGCG 59 220042759 220047482 TTCGTTTGCCTTGAAACTCTG 60 NA Rattus norvegicus 81 Tra2a ENSRNOG00000009156 ENSRNOT00000012325 1 1 1 80 4 78908399 78910048 ATGACTCTAAGGAGGCTATGG 59 78908339 78908360 TGGTGATAGAATAATCCACACG 58 NA Rattus norvegicus 81 Mir2985 ENSRNOG00000047006 ENSRNOT00000074092 3 1 1 62 2 179591386 179591405 GATCCTCATTAAGGTGGGTG 58 179591343 179591367 GGTGGGATACTATAACAACATTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 2 2 2 74 1 84893942 84894773 TGGTTCAGTGACATTTAGGGA 59 84893888 84893906 TTCTGAGTAGCATCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_3_1740.1 ENSRNOG00000056063 ENSRNOT00000089825 1 1 1 60 3 173937215 173937234 AGAAGATGCTGAGTGACCTG 60 173937252 173937275 GTTGGACAGTGAATAAGATAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekho2 ENSRNOG00000029242 ENSRNOT00000042633 2 1 1 80 8 71104685 71112844 TACGAGAATGAGGACGAGC 59 71104623 71104641 GACAGTACGGATGTCCTGG 60 NA Rattus norvegicus 81 LOC100364912 ENSRNOG00000004947 ENSRNOT00000006697 2 1 1 114 7 15026536 15027660 AAACTAAGTGGTCAAGTGGTG 59 15026442 15026462 CTCCTTGTAAGGAGTTCTGGT 59 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049356 ENSRNOT00000073212 1 1 1 60 8 41898796 41898819 CCATGTACTACTTTCTCTTCAACC 59 41898836 41898856 GTTATGACAGAGGAGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi3 ENSRNOG00000006950 ENSRNOT00000009230 3 1 1 80 5 159319027 159320632 GGATCCAGGATGAGATGGAG 59 159318966 159318987 CATTCCTCGGAGAATCAAAGAC 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076220 1 1 3 60 5 57448099 57448120 GGAATGCTTCTTGAACTCTAGG 59 57448060 57448080 AATAGTCTAACTTCCTGGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911999 ENSRNOG00000059901 ENSRNOT00000072049 1 1 1 60 8 41336460 41336478 GTGATGGGAAACTTGTGCT 58 41336501 41336520 TGGGAGTGTGAAGATTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lin7b ENSRNOG00000020746 ENSRNOT00000028164 3 1 1 87 1 101358879 101359549 TGTGAATGGTGTGAGTGTG 58 101358810 101358828 CACCACCAGTTTCACTGAG 58 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 1 2 2 80 12 6949649 6952745 GGATCTTCAGTGCATTTATCCT 58 6949590 6949608 GGAGTGTGACAATCTTCCG 58 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 3 2 2 80 12 6949104 6949123 AAGCTGTTCGAAACCTACCA 60 6944181 6949064 TTTACAATCTTCACCTGTGACG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915,ENSRNOT00000018185 3 2 5 83 7 120771636 120771741 TTGATCAAATCAGGCCTGAC 58 120771572 120771590 GGAAATCCTCTGCAAGCTG 59 NA Rattus norvegicus 81 Dleu7 ENSRNOG00000009181 ENSRNOT00000065838 2 1 1 84 15 45369235 45369254 GTAAGTGTGACTGCCAACTG 59 45361358 45369188 TTCCACGCTATCCTGTAGG 59 NA Rattus norvegicus 81 Fosl1 ENSRNOG00000020552 ENSRNOT00000027891 1 1 1 144 1 220826757 220826775 GACCCTACCGAACATCCAG 60 220826883 220829259 CAAGGTGGAACTTCTGCTG 59 NA InUTR Rattus norvegicus 81 Thada ENSRNOG00000025899 ENSRNOT00000038246 2 1 1 80 6 7466332 7466913 TCCAATGACAGATCTGAAATCC 58 7466273 7466291 CTCACAACTCTGCACAAGG 59 NA Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000004058 3 1 2 80 10 61897720 61979606 CCTCGGATAAGGTTATTGCAG 59 61979648 61979666 CTTCTTGTCCACAAAGGGC 59 NA Rattus norvegicus 81 LOC102553785 ENSRNOG00000025200 ENSRNOT00000036989 3 1 1 82 X 71683309 71683327 AAGTTCCAGGAAACCTGCA 60 71683373 71683859 ATCTTCTTCACCAGCAGGG 59 NA Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 2 2 2 80 8 107910962 107910981 GATTCTGAGACCTCAGAGGA 58 107911024 107913473 CTGTACCAGTGTTGCTGAG 58 NA Rattus norvegicus 81 Adcy1 ENSRNOG00000059479 ENSRNOT00000088032 2 1 1 80 14 87387860 87387880 TGAGAGGAACACCTTTCTGAG 60 87387920 87390860 CCTGGAAATATCTTCCTCCGA 59 NA Rattus norvegicus 81 Upb1 ENSRNOG00000038258 ENSRNOT00000058237 1 1 1 80 20 14167691 14169310 TTTCTGGACTTTCAAGATGACG 59 14167632 14167651 GGACTGTAGTTGGGTTTGAC 59 NA Rattus norvegicus 81 Pyroxd2 ENSRNOG00000015807 ENSRNOT00000021257 2 1 1 80 1 261967339 261967357 TGAACTGTGAAGACACCCT 59 261965823 261967298 CAATCATAGGTCTTTGGGAAGG 59 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288,ENSRNOT00000088995 1 2 2 80 7 70461866 70461984 TACTATTTGCCCAAGGCTG 58 70461804 70461822 TGGAAGTTCTTGCATCTGG 58 NA Rattus norvegicus 81 Mmd2 ENSRNOG00000001113 ENSRNOT00000060608 2 1 1 80 12 14062219 14063838 TTCCATGAACGGTACAAGCT 60 14063881 14063899 CATGGAGAGGATGACCAGG 59 NA Rattus norvegicus 81 Cdk14 ENSRNOG00000007151 ENSRNOT00000009417 1 1 1 80 4 26277477 26277496 GTTCTTGGAACACCAAACGA 59 26277537 26304357 GTACACGGTAAATCGTTCTGG 59 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 2 2 2 80 1 220784824 220784844 GCAGACAACAAAGAAAGAACG 59 220784683 220784782 CTGAAGAGATCCTCTGCCT 58 NA Rattus norvegicus 81 LOC102553119 ENSRNOG00000014212 ENSRNOT00000019670 2 1 1 110 9 71311492 71311510 GTATCTGGAGATGGGTGCC 60 71305227 71311419 ATAGTCACATGAGCACCCAG 60 NA Rattus norvegicus 81 Prss3 ENSRNOG00000013382 ENSRNOT00000018042 1 1 1 80 4 69266241 69267290 CTCACTGCTACAAATCCCGA 60 69266180 69266199 CAATGAATTGCTCACCACCC 60 NA Rattus norvegicus 81 Srm ENSRNOG00000011078 ENSRNOT00000014934 1 1 1 80 5 165406197 165406955 GATCGATGAGGATGTCATTGAG 59 165406996 165407014 AGAGTCAGCTTTGAGCTGG 60 NA Rattus norvegicus 81 Srm ENSRNOG00000011078 ENSRNOT00000014934 3 1 1 80 5 165406198 165406955 ATCGATGAGGATGTCATTGAG 58 165406997 165407015 GAGAGTCAGCTTTGAGCTG 58 NA Rattus norvegicus 81 LOC100362038 ENSRNOG00000007419 ENSRNOT00000059780 3 1 1 80 10 20598687 20600119 TTCGCACAATTGGAAACCTC 60 20600159 20600180 CAGAATCTATGTACAGCAAGCC 59 NA Rattus norvegicus 81 Taf6 ENSRNOG00000001355 ENSRNOT00000001829 2 1 1 80 12 19325875 19325893 GATTCAGGAGGAGACTTGC 58 19325427 19325831 AACTTCAAAGCATCCTGGG 58 NA Rattus norvegicus 81 Pof1b ENSRNOG00000004795 ENSRNOT00000006415 3 1 1 80 X 84129786 84133864 AAACACAGATCAGGAATGCTG 59 84129726 84129745 TGTGGTGAGTGGATGATCTG 60 NA Rattus norvegicus 81 Taar2 ENSRNOG00000025951 ENSRNOT00000035424 2 1 1 60 1 22579002 22581972 AGGAAACCTTCGATTGTTCAG 59 22578962 22578982 AGAGACCTTTCATTCTCTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_0814.19 ENSRNOG00000051122 ENSRNOT00000075877 3 1 1 80 5 77742335 77743076 GCCTCAATAGGAAATCATGATCC 60 77742277 77742297 CTTTCCTGAAGAACATCGCTC 59 NA Rattus norvegicus 81 Pom121l12 ENSRNOG00000050580 ENSRNOT00000074877 1 1 1 60 14 97686277 97686295 GCCATCAGACCTTCTACAG 57 97686318 97686337 AGGTATCCCAGGCATTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pom121l12 ENSRNOG00000050580 ENSRNOT00000074877 3 1 1 60 14 97686283 97686301 AGACCTTCTACAGATGCCA 58 97686324 97686343 TCATATAGGTATCCCAGGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 1 2 2 80 16 19767944 19768296 CTGACTACGAGCTTAAGTACC 58 19768338 19768356 CGTACTGGTCCTGAAACAC 58 NA Rattus norvegicus 81 Slc7a13 ENSRNOG00000024903 ENSRNOT00000035685 1 1 1 80 5 33793939 33793958 ACTGTGGTGTACTTACTGGC 60 33794001 33801679 AGCCACAGCATCTGAAGAG 60 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853,ENSRNOT00000060020 2 2 2 81 12 19580691 19580842 CCTCAAGGTGCTGAATAGCT 60 19580629 19580648 ATAACTGGCGTTGAAGTTGG 59 NA Rattus norvegicus 81 Ebf2 ENSRNOG00000011548 ENSRNOT00000016568 1 1 1 80 15 44063105 44063829 GTATGGAGTGAGCTTATAACCC 58 44063870 44063888 TGTCACTTCCACAACTCCA 59 NA Rattus norvegicus 81 Tfap2e ENSRNOG00000027595 ENSRNOT00000038248 2 1 1 113 5 144747421 144760212 TCCGTGATCAAGAAAGTCCC 60 144747327 144747345 GGAGCAGAAGACCTCACTG 60 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 1 1 2 104 2 235312003 235321204 GTACAAGTGTAGCGACGGA 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Serp2 ENSRNOG00000038228 ENSRNOT00000058204 1 1 1 80 15 58694626 58705102 CTGTGGCTCAGACTTAAATCC 59 58694566 58694584 GAATGTTCTGGCAGTCTCC 58 NA Rattus norvegicus 81 Klk14 ENSRNOG00000033706 ENSRNOT00000029197 1 1 1 83 1 99620484 99620895 CATGTCAGGGTGATTCTGG 58 99620942 99620960 TAGCACAACGTTCCATTCC 58 NA Rattus norvegicus 81 Epdr1 ENSRNOG00000060141 ENSRNOT00000085923 2 1 1 80 17 47419643 47420683 AGCCAGATCCTATGAAACCT 58 47420722 47420744 TAGTTCCTAATGAAGGTCTCCTG 59 NA Rattus norvegicus 81 Vom1r108 ENSRNOG00000048787 ENSRNOT00000068151 1 1 1 60 7 18121453 18121474 CTTTCTTACTCATTCTCCTCCA 57 18121492 18121513 GCATTGGATATTTGGAGTAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000012067 2 1 5 139 2 192565925 192565943 TTACCAAGAACAGCAGTGC 58 192566787 192566805 GAGGAGGACAAGACTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem55a ENSRNOG00000006697 ENSRNOT00000009375 2 1 1 80 5 28420137 28420156 TGCCCTTGTAATTGTCTCCT 59 28420198 28421229 GATTATGCGTCGACAGTTGG 60 NA Rattus norvegicus 81 Klk12 ENSRNOG00000034012 ENSRNOT00000024758 3 1 1 86 1 99706930 99708024 CAGTGGCAAGTACATGGTG 59 99708074 99708092 ATGGAGAAGGTGGTGAGTC 59 NA InUTR Rattus norvegicus 81 Celf1 ENSRNOG00000010379 ENSRNOT00000014484 2 1 1 80 3 79835778 79835797 CCTCCCTACTCTGTACAACC 59 79835839 79837792 CCTTCTGGACCTTCCTTCTG 60 NA Rattus norvegicus 81 Rn60_5_0815.3 ENSRNOG00000050682 ENSRNOT00000052175 2 1 1 80 5 77366874 77367244 CCTCTATAGTAGAACAAAGGATCTG 58 77366818 77366836 CTAGTGATTACATGCGCCT 57 NA Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000007160 3 1 2 80 6 29192880 29192898 CTCGCTGCCTTTCTATGAC 58 29192614 29192837 GACTCCATACCACCTGAGAG 59 NA Rattus norvegicus 81 Tns3 ENSRNOG00000025695 ENSRNOT00000012661 2 1 1 80 14 88790077 88790095 AGGAGTCCTACTTGCACAG 59 88788385 88790038 GGTTTAATACCAGGTAGTTGTCTC 59 NA Rattus norvegicus 81 LOC100911575 ENSRNOG00000037607 ENSRNOT00000057030 2 1 1 123 1 214428535 214428553 GTTGCCTCTTATCTGCTGG 58 214428638 214429335 CACTGATGACCTTGTTGAGTC 59 NA Rattus norvegicus 81 Ppt1 ENSRNOG00000012616 ENSRNOT00000017998 3 1 1 81 5 140545715 140548442 GGGACAACATCAAGGTGTC 59 140548485 140548505 AAGTGACTTCCTGATGAAGTC 58 NA Rattus norvegicus 81 Olr226 ENSRNOG00000061860 ENSRNOT00000090329 2 1 1 60 1 148846811 148846830 TGGTCTCTGTACTCTACGCT 60 148846770 148846788 CGCAAGCAGTAGATGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000066691 2 1 2 152 1 219311921 219311943 CCTTACACCATCATCTATTTCCC 59 219311266 219311401 GATCTGCCCAAACAGACAG 59 NA Rattus norvegicus 81 Cyp2c7 ENSRNOG00000046080 ENSRNOT00000030039 1 1 1 86 1 147583933 147585433 ATTTCATTCCCAAGGGCAC 58 147585483 147585501 CAAACTTCTCTGGGTTGGG 58 NA Rattus norvegicus 81 Ceacam3 ENSRNOG00000027607 ENSRNOT00000023663 3 1 1 85 1 79124146 79127809 TGTGTACTTCTCCACTTTGAC 58 79127856 79127874 CTTTAGAGATGCTGGTCGG 58 NA Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 2 2 2 80 10 10992247 10992916 AAGAAGGAGCTATTTAAGCTGG 58 10992188 10992207 CTTGTTGCGATCCATTTCCT 59 NA Rattus norvegicus 81 Aurka ENSRNOG00000004479 ENSRNOT00000055102 3 1 1 80 3 170368200 170370904 AACAGCTACCTACATCACGG 60 170368139 170368157 GGCTTGATGTCTCTGTGGA 59 NA Rattus norvegicus 81 AABR07002623.2 ENSRNOG00000051483 ENSRNOT00000080422 3 1 1 104 1 77806398 77806534 AAGCCCAAGTATCTCCAGC 60 77806131 77806149 CACTTCAAAGAACCCGGTG 59 NA Rattus norvegicus 81 Ccdc6 ENSRNOG00000024019 ENSRNOT00000032159 1 1 1 80 20 19752248 19752269 ATATCCGGTTCCTAAAGAACGA 59 19746408 19752207 CCATCTTCTCCGAATGCTG 58 NA Rattus norvegicus 81 Olr1256 ENSRNOG00000049225 ENSRNOT00000072605 3 1 1 60 8 42409688 42409706 TTCTGTGACGGTAACACCA 59 42409729 42409748 AGAGCTGCAGTAAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1319 ENSRNOG00000053365 ENSRNOT00000083262 1 1 1 60 8 43607368 43607386 TGAGAGCAGATTCAAAGCC 58 43607410 43607428 GAAGACAGCCACAGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562039 ENSRNOG00000030519 ENSRNOT00000049790 1 1 1 80 X 80351160 80351178 CGTACTAAGGTTGCCTCTC 57 80350754 80351117 GAAACGTATGAAATCGCCAC 58 NA Rattus norvegicus 81 Adap2 ENSRNOG00000037148 ENSRNOT00000056273 1 1 1 80 10 67514335 67514354 GGCTCCAGATTACCCTACAG 59 67514399 67519300 CCAATCCACTATCTCCTTTCCA 60 NA Rattus norvegicus 81 Rapgef1 ENSRNOG00000014316 ENSRNOT00000060977 2 1 1 80 3 8244521 8244543 GAACTCAGAAGATAAGGAGATGG 58 8244583 8253968 CTCACCAGTTCCTTCACTC 58 NA Rattus norvegicus 81 Rn60_X_0637.4 ENSRNOG00000051319 ENSRNOT00000076935 1 1 1 80 X 63107984 63108002 AAAGAGGGCCAGAAAGGAG 59 63107688 63107942 TCTTGGATCCAGTGTCATGTC 60 NA Rattus norvegicus 81 Ethe1 ENSRNOG00000019982 ENSRNOT00000027075 2 1 1 80 1 81470752 81471161 CTCATGATTACCACGGGCT 60 81471205 81471223 CCTCACAGCTGAGAGTGAG 60 NA Rattus norvegicus 81 MGC105567 ENSRNOG00000038955 ENSRNOT00000040116 2 1 1 95 18 55685627 55685648 ACGTGAAGAGACTAGAGAACAC 60 55685703 55702891 AAACAAAGGCCCAGAAACTC 59 NA InUTR Rattus norvegicus 81 Mrpl34 ENSRNOG00000017552 ENSRNOT00000023579 3 1 1 110 16 19874111 19874294 TGTTGAGTGGCAGGTATCTC 60 19874367 19874385 TCGGCTGATACTCGTTTCC 60 NA Rattus norvegicus 81 C1ql4 ENSRNOG00000060020 ENSRNOT00000081784 3 1 1 91 7 140767913 140770125 ATGAAGAACGGACAGGTCC 59 140767840 140767858 TCTAGGTGCAGAATGACGC 60 NA Rattus norvegicus 81 Fancf ENSRNOG00000023968 ENSRNOT00000032922 3 1 1 60 1 107231432 107231450 GAAGAGCTGTGTCTAAGGC 58 107231390 107231408 CCTCTTCCTGCAGAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fzd2 ENSRNOG00000021962 ENSRNOT00000032944 1 1 1 60 10 90551196 90551215 CAGGGCACTAAGAAAGAAGG 58 90551236 90551256 CCATACTGAAGAAGTACAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtm5 ENSRNOG00000016828 ENSRNOT00000022664 1 1 1 90 15 33601593 33601611 TTCTTCATCACACTGGCCT 59 33601665 33602162 GGAGGAAGTCCAGACAAGG 59 NA Rattus norvegicus 81 LOC100360200 ENSRNOG00000025217 ENSRNOT00000038958 1 1 1 150 12 12188265 12188283 AAGTTCGACTTGGCAATCG 59 12188538 12188556 CACTAATGTGGCGGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100363452 ENSRNOG00000021395 ENSRNOT00000037551 1 1 1 60 3 103193201 103193219 TTCTCGCCTGTATTGCCTC 60 103193243 103193261 TCGAGCACATAGCCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681193 ENSRNOG00000048562 ENSRNOT00000071028 1 1 1 97 1 214454218 214454236 CCGGGATATACCACCACTG 59 214453949 214453967 GAACTGGGATGATCATGGC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100909966 ENSRNOG00000032371 ENSRNOT00000045582 3 1 1 60 1 149603102 149603123 TACTTCCCATCAGTTACAGACC 59 149603063 149603084 CTCCAAGAATGACAGATTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 1 2 2 80 8 68444763 68454429 ATCAATAACAGCCTCCTTTCC 58 68444703 68444723 TTCTGTTTCTGTTGAGACTCC 58 NA Rattus norvegicus 81 Kdelr1 ENSRNOG00000021082 ENSRNOT00000028627 3 1 1 80 1 101860269 101860463 TACCTGCATGAAGGTGGTC 59 101860504 101860525 TCATACGTAGCTTTGAACTTGC 59 NA Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 1 2 2 80 X 105268445 105268463 AGAGGCTTAAACAGCTCCA 59 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Rn60_2_0094.1 ENSRNOG00000051037 ENSRNOT00000076041 3 1 1 60 2 9496747 9496768 CAAATTGTGTCTTCCATCACTG 58 9496787 9496807 TTAGATCAACATTCAGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr2i ENSRNOG00000050560 ENSRNOT00000073107 3 1 1 86 1 91042084 91042182 TGCCAGGAATGTAATAACATGC 60 91041805 91041823 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Atp6v0d1 ENSRNOG00000017235 ENSRNOT00000023606 2 1 1 80 19 37483043 37483065 GTCCTTCTACAAGTTCTGTACTC 58 37482860 37483005 CGATCTGCTTCAAACTCTAGG 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000084458 1 1 8 60 13 68717383 68717401 ATCTGTGCTGGATTGTGAG 58 68717425 68717443 ATCTACACAACTGGCTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321,ENSRNOT00000085022 3 2 2 80 8 49253637 49253655 TCTTCCTGAATCCATCCCG 59 49251815 49253593 GGAACTGAGCCATGAACTG 59 NA Rattus norvegicus 81 Fam26e ENSRNOG00000000825 ENSRNOT00000057313 1 1 1 86 20 27652853 27657256 AGTCTCAGATTCTAGGATGGTG 59 27652788 27652806 CTTTAGATCTGCAGCGTGC 59 NA Rattus norvegicus 81 Olr227 ENSRNOG00000049285 ENSRNOT00000073451 2 1 1 60 1 148862503 148862525 GAAACCAGACAAGAGTAACTGAG 59 148862543 148862563 ATTTCAGTAGGCAGGGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 1 1 1 60 18 40723983 40724709 AAGTTGGGACTCTATATGAGTG 57 40723944 40723963 TTGCAGTAATGTAGGACCAG 57 NA DesignNoJunction Rattus norvegicus 81 LOC100910611 ENSRNOG00000046375 ENSRNOT00000074588 1 1 1 81 1 82817043 82818368 CTGCTCAGATATGCTGACC 58 82818413 82818431 TTTCCACTCAACTGCTGTC 58 NA Rattus norvegicus 81 Phpt1 ENSRNOG00000016723 ENSRNOT00000022495 1 1 1 80 3 2797296 2797806 GGCTATTCTATGGGTTACGG 58 2797235 2797257 GACCTCATAATCAGGATACTTGG 58 NA Rattus norvegicus 81 Srp9 ENSRNOG00000003211 ENSRNOT00000004297 3 1 1 80 13 100555906 100558427 GATCTAGTCTGTTTGGTGTACAG 59 100558467 100558485 TCGCATTAACTGACTGTGG 58 NA Rattus norvegicus 81 Fbxo28 ENSRNOG00000000066 ENSRNOT00000000074 2 1 1 80 13 100728640 100728658 AGGGCTTTCTGAAAGTGGA 59 100724843 100728596 TTTCTGACTCCCTCCTTGG 59 NA Rattus norvegicus 81 Edf1 ENSRNOG00000016272 ENSRNOT00000022196 1 1 1 89 3 2781306 2783467 TCTAAGCAGGCCATCTTAGC 60 2783838 2783856 GGAATGCTGCTTGTTCTGG 60 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 2 2 2 80 7 97057461 97057481 GAAGGAACTCCAGAGAATTGC 59 97053303 97057419 TTGGATCGCAAGTCCTCAG 60 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 2 2 2 80 5 19520403 19520424 CCTTCATGAGTGGATTGATCTG 59 19519833 19520362 GGGTGAAACACGTTATGGG 59 NA Rattus norvegicus 81 Osbpl11 ENSRNOG00000001782 ENSRNOT00000002428 3 1 1 80 11 70806655 70806674 ATTCCAAACTGCAATCAGTG 57 70799624 70806615 CATGAGACATCATTTCTCTGAC 57 NA Rattus norvegicus 81 Cacng5 ENSRNOG00000003288 ENSRNOT00000004578 3 1 1 80 10 96125611 96129097 TCTTTATCCTATCCGGCCTC 59 96125550 96125568 TTCTGTTGAGCATCTCGTC 58 NA Rattus norvegicus 81 Rarres2 ENSRNOG00000024705 ENSRNOT00000033918 3 1 1 82 4 78208029 78208235 GATGACCTGTTCTTCTCAGCT 60 78207967 78207985 TTCCAGTCCTTCTTCAGGC 59 NA Rattus norvegicus 81 Tdrd3 ENSRNOG00000009034 ENSRNOT00000012440 1 1 1 80 15 70832057 70832075 CGGACTACGGAAACTACGA 59 70832119 70859084 AGGTACCCTCTTCTTCCCA 59 NA Rattus norvegicus 81 Wbp2 ENSRNOG00000007971 ENSRNOT00000010826 3 1 1 80 10 104634547 104634566 ACGACATGAAGAATGTACCA 57 104633398 104634504 GAAAGATGACCCGGTATGG 58 NA Rattus norvegicus 81 Hesx1 ENSRNOG00000014133 ENSRNOT00000019113 2 1 1 83 16 2636222 2636240 ATGAACTGCTATCCTGGCA 59 2636284 2636386 GAACCAAATCTGGATTCTGTCC 59 NA Rattus norvegicus 81 Sectm1a ENSRNOG00000036672 ENSRNOT00000054931 2 1 1 80 10 110266577 110266595 ATATACTTGTGGCAGCTGC 58 110265595 110266534 GTCCTCATTTGAAGGCTCTG 59 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000065531 2 1 2 87 6 39362130 39362624 CTGTAAGGGATGGGATCTCAG 60 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA Rattus norvegicus 81 Lce1f ENSRNOG00000023892 ENSRNOT00000056485 2 1 1 170 2 192991063 192991081 TTTCTTCCTGCTGTAGCCT 59 192990911 192990929 TACAGCATCCAGAACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 1 2 2 80 5 67900755 67985209 TTTGTTGAGCTTGTCATCATGG 60 67900696 67900716 GATATGCACCTGAAAGGTGTC 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555,ENSRNOT00000065011 3 2 2 80 1 88713380 88713398 TGAGCTGATCAAGGTGGAG 59 88711330 88713337 AGCAAAGTCACTCCTGTCTC 60 NA Rattus norvegicus 81 Slc26a2 ENSRNOG00000018082 ENSRNOT00000024374 1 1 1 88 18 56524249 56524268 CATTAGACGGACTCTGTGAC 58 56522402 56524200 CATGGCTACCTGATAAACTCC 58 NA Rattus norvegicus 81 Fcgrt ENSRNOG00000020583 ENSRNOT00000027944 3 1 1 80 1 101094506 101094738 TGGAGAACCAAATAAATGGGAC 59 101094447 101094468 TGGGCAATGAAGAATTATCAGG 59 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 1 2 2 82 3 22642329 22643276 AAGAAGACTACTACAGGCGG 59 22643321 22643339 ACGCATCACCATCTCTGAG 60 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 3 2 2 86 3 22648841 22648859 TTAACCACAATCCCGATGC 58 22648909 22657548 TCTGAAACCAGACCTGGAG 59 NA Rattus norvegicus 81 Pcdh8 ENSRNOG00000013101 ENSRNOT00000017599 3 1 1 60 15 62197835 62197853 GACCTCATCAACCACATGC 59 62197401 62197419 CTAGGATCTTGCACTCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_19_0706.2 ENSRNOG00000051278 ENSRNOT00000073582 2 1 1 60 19 59913858 59913877 GAACTTGACATAGTGCCTCC 58 59913900 59913918 CATCAGAGGTCTCAGTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alkbh6 ENSRNOG00000025216 ENSRNOT00000051259 2 1 1 94 1 88770222 88770240 CAAAGTGTCTGACCTCAGC 59 88770298 88770530 CTTCATGAGGCATGATGCC 59 NA Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 1 1 1 79 12 2543666 2544172 GTGTCTGCCTCAGGATGAG 60 2543605 2543623 GTGTCAACATGTGCAGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Sgce ENSRNOG00000046905 ENSRNOT00000074177 3 1 1 80 4 29759487 29763082 TAATGTCAGCAGAAGAATTCCC 59 29759428 29759446 TGGCCAACATTTCTTCCAC 59 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019,ENSRNOT00000081124 1 2 2 60 X 63290361 63291043 CGCCACATTGGATGTTACC 59 63290319 63290337 AGCTTGTCTGCTGATAACC 58 NA DesignRelaxed Rattus norvegicus 81 B3gat3 ENSRNOG00000019804 ENSRNOT00000026875 1 1 1 80 1 225125672 225125691 TGGAAAGTAGTCTCCTGAGC 59 225125733 225126102 ACACCAGTACCTGAGTACAG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070,ENSRNOT00000078463,ENSRNOT00000089905,ENSRNOT00000058735 1 4 11 80 6 99150450 99150469 AAGAAACTCAAACAGCTGCG 60 99150510 99151185 CAAAGAAGCGTCTGGATTCAG 60 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070,ENSRNOT00000078463,ENSRNOT00000089905,ENSRNOT00000058735 2 4 11 80 6 99150449 99150468 GAAGAAACTCAAACAGCTGC 58 99150510 99151184 AAAGAAGCGTCTGGATTCAG 58 NA Rattus norvegicus 81 Olr309 ENSRNOG00000047518 ENSRNOT00000073278 1 1 1 60 1 213335163 213335184 GACATTATCTGCACATCTTCTG 57 213335204 213335223 TTTCCTCAGACAGTAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_1085.1 ENSRNOG00000056687 ENSRNOT00000088842 3 1 1 60 5 104450100 104450119 TGTTCTCAACTCTTCCACAC 58 104450140 104450160 AGAGTCTCTTCTCATCTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr341 ENSRNOG00000050798 ENSRNOT00000072071 2 1 1 60 1 229765038 229765056 CTCATCTACACCATCACCC 57 229764996 229765014 AGTCCAAGACAATCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 3 3 3 80 7 141066712 141067355 GGATTACATCTGGCACTGC 59 141067399 141067417 TTGAAGGCCAAGATCAGCA 60 NA Rattus norvegicus 81 Adam17 ENSRNOG00000060694 ENSRNOT00000081110 1 1 1 80 6 43409918 43409936 TACCTGAACAACGACACCT 59 43408761 43409877 GCAAGGACTATTCCTATCACTG 59 NA Rattus norvegicus 81 Acvr1b ENSRNOG00000006934 ENSRNOT00000009345 2 1 1 80 7 142844619 142847663 GACAATAAAGACAATGGCACCT 59 142847702 142847722 CAGATAATCGAACAGTGAGCC 59 NA Rattus norvegicus 81 Acvr1b ENSRNOG00000006934 ENSRNOT00000009345 3 1 1 80 7 142844617 142847661 CTGACAATAAAGACAATGGCAC 58 142847701 142847720 GATAATCGAACAGTGAGCCG 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 3 4 6 82 15 36972825 36976237 AACATGGGAGATGCATTTAGC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Rsb66 ENSRNOG00000012697 ENSRNOT00000017004 2 1 1 80 3 7270827 7271400 ATCCTCAGAGCAAAGTACCC 59 7270766 7270784 GACCACACCTCCATAGTGG 60 NA Rattus norvegicus 81 LOC497934 ENSRNOG00000006513 ENSRNOT00000008507 1 1 1 61 10 55642722 55642740 CATCTCCAGCCCACTAGAG 59 55642765 55642783 CAAAGTGAGTAAGGTCGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 1 2 2 80 7 139716088 139716201 GGCTTTGAGGCTTACACAG 59 139716245 139716263 GACCACAAATGGGATGCAG 59 NA Rattus norvegicus 81 AABR07047232.1 ENSRNOG00000048316 ENSRNOT00000075288 1 1 1 80 5 24926180 24926896 GCTTCCTGGAGGAGATCAG 59 24926118 24926138 TCCTCCAAACGCTTAATTCTC 59 NA Rattus norvegicus 81 Psme4 ENSRNOG00000060340 ENSRNOT00000078329 2 1 1 80 14 115211980 115212985 TGAATACTTCCCTATCAAGGACTG 60 115213023 115213042 TCTGAAGAAGGAACATGCCA 59 NA Rattus norvegicus 81 Rala ENSRNOG00000013454 ENSRNOT00000018190 2 1 1 94 17 49717383 49717402 ACAACTACTTCCGAAGTGGG 60 49717458 49721429 AATCTGTTCCCTGAAGTCCG 60 NA Rattus norvegicus 81 Cox17 ENSRNOG00000038951 ENSRNOT00000059541 3 1 1 81 11 64968287 64968305 GCTCAGGAGAAGAAGCCTC 60 64966040 64968243 CTTTCTCAATGATGCACGCA 60 NA Rattus norvegicus 81 Srp14 ENSRNOG00000007512 ENSRNOT00000009866 3 1 1 84 3 110246450 110246992 GTGAATAAGTTTCAGATGGCCT 59 110246387 110246408 TACTCTTGTTCTTCTTGTCCCT 59 NA Rattus norvegicus 81 Pdk4 ENSRNOG00000009565 ENSRNOT00000012760 3 1 1 80 4 30552529 30552991 AGCAGTAGTCGAAGATGCC 60 30552467 30552486 GTGAGCTTTAATTCTGGCGA 59 NA Rattus norvegicus 81 LOC498933 ENSRNOG00000011671 ENSRNOT00000015541 1 1 1 80 19 32376404 32379109 ACTACTGAGACAACTTCAGC 57 32379152 32379170 GAGAATCGATCCGTGTCTG 58 NA Rattus norvegicus 81 Dirc2 ENSRNOG00000002240 ENSRNOT00000003048 1 1 1 80 11 68251967 68265438 TTGCCTTTGACAACAGTGAC 59 68265478 68265499 AAAGAATATAGGAACGCTGCTG 59 NA Rattus norvegicus 81 AABR07000747.1 ENSRNOG00000054246 ENSRNOT00000074143 2 1 1 81 1 24981964 24982451 CATGAAGAACAGGCCACAC 59 24981901 24981919 CAGAATTGACATGACCGCC 59 NA Rattus norvegicus 81 Tmem126b ENSRNOG00000022732 ENSRNOT00000038279 3 1 1 80 1 156267781 156273890 GCAGTTAAGTATCACACTGTTCC 60 156273928 156273948 CATCCCAGTTTGACAAAGGAG 59 NA Rattus norvegicus 81 LOC103691019 ENSRNOG00000053825 ENSRNOT00000090830 1 1 1 60 1 63201865 63201885 TCCAGTACATCCATGATTGTC 58 63201907 63201925 TGTGAATGTGTTGAACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jmjd7 ENSRNOG00000050072 ENSRNOT00000067181 2 1 1 80 3 111822965 111822984 TGTACTGTGTAGTCTCTGGC 59 111823022 111823217 TGTAGAGATTGTAAGGGATGAAGG 60 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000088730 1 1 2 92 7 142877269 142877287 GGCTGCTCAAATTCATCCC 59 142877343 142878266 ATCTGCTGTGGGTATCTGC 60 NA InUTR Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672,ENSRNOT00000036359 1 2 2 80 9 78597027 78602019 ATCCTGAAATCCAAGCTGTC 58 78596966 78596987 CTTCTCGATCGTACTGAAAGTC 59 NA Rattus norvegicus 81 Kcnj8 ENSRNOG00000013463 ENSRNOT00000018057 1 1 1 80 4 176784305 176787761 ACCAATGTCAGGTCATTCAC 58 176784244 176784263 CATCATTCTCCCTCCAAACC 58 NA Rattus norvegicus 81 Mrgpre ENSRNOG00000054917 ENSRNOT00000077911 2 1 1 60 1 216970513 216970531 TCCTGCTCTTCCTCTTCTG 58 216970471 216970489 GACAAGTTCTTGGACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 2 2 2 80 15 8746524 8746543 AGGTGGATGTTCTCAGACTG 59 8746584 8749388 CTCATAGGACAAACCAGATGC 59 NA Rattus norvegicus 81 Col18a1 ENSRNOG00000001229 ENSRNOT00000045315 2 1 1 80 20 12225443 12288974 AGAGCCAGAGAATGTTGCT 59 12289017 12289036 TCGACTTGGGAGATCTTCTG 59 NA Rattus norvegicus 81 Tars2 ENSRNOG00000057194 ENSRNOT00000087052 2 1 1 80 2 197871173 197871193 GTTACTGAGGAATTGGGAAGC 59 197870770 197871131 AAGAGCTCCTGTTCCTTCC 59 NA Rattus norvegicus 81 Sec61a1 ENSRNOG00000013743 ENSRNOT00000018454 2 1 1 80 4 120464739 120464830 TAGTATGCTGCCAGATTCCC 59 120464678 120464696 CCAGAATCACTCGCATCCA 60 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466,ENSRNOT00000011732 3 2 2 80 7 143183431 143183451 GAAGTCAAGGCACAGTATGAG 59 143183262 143183390 CTCCTCATACTTGGTCTGGT 59 NA Rattus norvegicus 81 Fopnl ENSRNOG00000053230 ENSRNOT00000083714 3 1 1 80 10 734069 735318 TCTGTCCTCATAGCAGAATCTG 60 735356 735377 TTCAAAGGCATTTAGTTCACGG 60 NA Rattus norvegicus 81 Tcea2 ENSRNOG00000016288 ENSRNOT00000022073 2 1 1 80 3 177191281 177191299 CAGAGTTCAGACGAGGAGC 60 177191341 177192126 GCCATCAGAAACATCCAAGAG 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 2 2 2 80 4 181079315 181079336 GAAGATGTTCTACAGCTTTCAG 57 181079376 181080129 AATGTCATCATGTCACCTCC 58 NA Rattus norvegicus 81 LOC100910318 ENSRNOG00000049062 ENSRNOT00000073738 1 1 1 75 10 35040087 35040108 CGGGAACCTACAATTTAATCAC 58 35036841 35036861 ACAAAGTAGAAGCTTCCAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dytn ENSRNOG00000042181 ENSRNOT00000064447 1 1 1 80 9 70359013 70359033 TGTTTCTTATCTGGTCTCCAC 58 70356942 70358969 CTCTGTTGCTGACATCTGG 58 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081029,ENSRNOT00000081594 1 3 3 80 8 107538580 107540017 CCAGAGATACTTTCAGGTGC 58 107540057 107540078 CTCTGTTTGTAAATGACTCCTG 57 NA Rattus norvegicus 81 Ccdc53 ENSRNOG00000005102 ENSRNOT00000006903 1 1 1 80 7 28763207 28763226 TCTAAACCAGTTTGTGGTGC 59 28763268 28776036 GAAAGGTCTGCCAGTTTCTC 59 NA Rattus norvegicus 81 LOC100361265 ENSRNOG00000025211 ENSRNOT00000037212 2 1 1 80 X 71678360 71678378 CCTCTACGCCTACCATTCC 59 71678027 71678317 GAACATCAGACACTGTTGGC 60 NA Rattus norvegicus 81 LOC100361265 ENSRNOG00000025211 ENSRNOT00000037212 3 1 1 81 X 71678360 71678378 CCTCTACGCCTACCATTCC 59 71678026 71678316 GGAACATCAGACACTGTTGG 59 NA Rattus norvegicus 81 Tcp11 ENSRNOG00000000499 ENSRNOT00000045044 3 1 1 81 20 7649951 7649970 TCTGAAAGAACAGCTGTCAG 58 7649508 7649909 CAGCAGGATCTCTTTGATCTC 58 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867,ENSRNOT00000077612 1 2 2 80 11 65119825 65135284 GGCGAGAAGAAAGATGAGG 58 65119763 65119781 ATAGTGTCTGGCGACTCTG 59 NA Rattus norvegicus 81 Gna13 ENSRNOG00000036745 ENSRNOT00000055062 3 1 1 80 10 97676073 97679444 GAGTACCGGACTACATTCCG 60 97679484 97679505 CAAAGTCATACTCATGGATGCC 60 NA Rattus norvegicus 81 Fgf21 ENSRNOG00000020990 ENSRNOT00000028490 1 1 1 80 1 101596435 101596455 GTCATTCAAATCCTGGGTGTC 59 101595855 101596395 AAAGTGAGGCGATCCATAGAG 60 NA Rattus norvegicus 81 Marc2 ENSRNOG00000037850 ENSRNOT00000029439 3 1 1 80 13 102744392 102745527 CTTCAGAACTATGAGGTCGC 58 102744331 102744350 GGTGTTGAGATCCACTAAGG 58 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 2 2 2 80 4 87249184 87249204 GTATCAAGAACCCAACGAGAG 59 87247941 87249145 CGGTTATTATCTGAAGTTTGGC 58 NA Rattus norvegicus 81 Hoxb6 ENSRNOG00000007823 ENSRNOT00000010527 3 1 1 90 10 84148238 84149346 AATTCGTGCAACAGTTCCT 58 84149400 84149418 ATTCCTTCTCCAGCTCCAG 59 NA Rattus norvegicus 81 Vom1r101 ENSRNOG00000029263 ENSRNOT00000042796 1 1 1 60 4 119398331 119398351 AAGGACTAAGTTCAAGGATGG 57 119398291 119398312 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc21 ENSRNOG00000017876 ENSRNOT00000024218 1 1 1 80 2 60437320 60437338 AAAGGAGTTTGGAGATGGG 57 60433572 60437279 TCACTGTCTTTACCATCTACTG 57 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 2 2 2 89 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529440 18529459 AAGTTCCTGTAGTTTCTGCC 58 NA Rattus norvegicus 81 Meaf6 ENSRNOG00000009309 ENSRNOT00000067204 1 1 1 88 5 143096380 143096398 TCAGAAAGCTGCCTCTTCC 60 143096450 143101574 TCAGATCAATCCTGTGCCG 60 NA Rattus norvegicus 81 Best2 ENSRNOG00000003737 ENSRNOT00000067600 2 1 1 80 19 26125158 26125260 GGCTTAAGGTAGCAGAGCA 60 26125096 26125116 TGCGGTCAATAAGAAAGTTGG 59 NA Rattus norvegicus 81 Vom1r77 ENSRNOG00000032672 ENSRNOT00000044351 1 1 1 60 4 87872959 87872980 TCTATCTGTACTATCTGCCTCC 58 87872920 87872939 ACGTACTGGGACTGATAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss13 ENSRNOG00000016397 ENSRNOT00000021949 1 1 1 80 8 49646412 49648264 CCAAGGAAACAGATGAGAAGAC 59 49648302 49648323 AGTCATTGCACTTCTTGAAGTC 59 NA Rattus norvegicus 81 Deptor ENSRNOG00000004328 ENSRNOT00000005722 1 1 1 80 7 94960516 94960535 GAGGAAGTAAACCATGCCAC 59 94960576 94995495 CAAACTGACAGACCTTCATCC 59 NA Rattus norvegicus 81 Deptor ENSRNOG00000004328 ENSRNOT00000005722 2 1 1 80 7 94960513 94960532 TTCGAGGAAGTAAACCATGC 58 94960575 94995492 ACTGACAGACCTTCATCCC 59 NA Rattus norvegicus 81 Olr16 ENSRNOG00000055974 ENSRNOT00000086084 2 1 1 60 1 149675285 149675305 ATCACTCTGGATCTGAAACTC 57 149675245 149675264 ACAGGGACAGATTCTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025384 1 1 2 89 2 187349018 187349036 AGGGCCAGATACTTGAGAG 58 187349089 187349371 GAGATCTACCTGCCTCCTG 59 NA Rattus norvegicus 81 Man2b2 ENSRNOG00000061779 ENSRNOT00000078562 1 1 1 80 14 78958612 78961273 AGACAGCCATTCACAGACC 60 78961317 78961335 CAGGTAAGCTGAGGACCTG 60 NA Rattus norvegicus 81 Mmp1b ENSRNOG00000008881 ENSRNOT00000011884 1 1 1 80 8 5630641 5630660 CCACTAACATTCGAAAGGGT 58 5630376 5630599 GTAAAGGTCACCATGGTCTC 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123,ENSRNOT00000078991,ENSRNOT00000012622 1 3 3 80 4 99800023 99800043 TAGGTCTTCTTCAAGCAGTGG 60 99799466 99799986 GGCCATATTCTTTACTGTCTTTCC 60 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000050886 2 1 2 60 9 71778299 71778317 AACTGAAACCTCCCATCCG 60 71778170 71778278 CCTCATAGAAGGTGATCTTCCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000064562 2 1 2 83 9 71777992 71778010 ACTACCCTGACTACCAGCA 60 71764641 71777945 TTCTGTGAGAGCTGGAGTG 59 NA Rattus norvegicus 81 Olr778 ENSRNOG00000004993 ENSRNOT00000006622 1 1 1 60 3 103111454 103111472 AGGCACTGAGATGGTACTG 59 103111412 103111431 TTTGCATATGGCCACATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616,ENSRNOT00000010910 1 2 2 80 13 113905179 113906002 GTATCAGAACTGCTTCTTTAGGG 59 113905121 113905139 ATCGAGCTATAGTCCCACC 58 NA Rattus norvegicus 81 Slc25a33 ENSRNOG00000016949 ENSRNOT00000022799 3 1 1 80 5 166710512 166715352 TCCTACAGGTTCTGAAATCGA 59 166710452 166710470 CTCCAACCAAGTTTGGACC 59 NA Rattus norvegicus 81 RGD1562699 ENSRNOG00000042716 ENSRNOT00000065939 2 1 1 87 18 59818605 59819021 CATCCCTTCCTGGAGAGTC 59 59818536 59818555 TAATCGTGTAATCGCAGAGC 58 NA Rattus norvegicus 81 Mnx1 ENSRNOG00000046959 ENSRNOT00000072287 1 1 1 80 4 2377913 2377931 GCTCAACAAGTACCTGTCG 59 2377307 2377870 CAAATCTTCACCTGGGTCTC 58 NA Rattus norvegicus 81 Prm2 ENSRNOG00000002539 ENSRNOT00000003450 3 1 1 104 10 4950652 4950671 CTTCACAGGATCCACAAGAG 58 4950860 4950878 CCTCCTTCGGGATCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Sh3tc2 ENSRNOG00000019305 ENSRNOT00000026174 3 1 1 80 18 57301125 57301144 AAGGACCAGTTCCTCATCAC 60 57301184 57303544 AGACACATAGCCTAAGTTCAGG 60 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896,ENSRNOT00000060924 3 2 2 80 12 11229567 11230300 ACATGAAGAAGTCCCAGGT 58 11230343 11230362 TGTAGTCCAGCTTCTTGAGG 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643,ENSRNOT00000022445 2 2 2 80 17 53643013 53652476 GACTACAAGCTTCCGAAAGC 59 53642952 53642970 TGCTACTGCTTTCTGGGTC 60 NA Rattus norvegicus 81 Stradb ENSRNOG00000010728 ENSRNOT00000043558 2 1 1 80 9 65773260 65776193 TGCATGTGGAGATAGGAAGAG 59 65776233 65776253 TTACCAGTGTTCCTGTAGGAG 59 NA Rattus norvegicus 81 Fancl ENSRNOG00000027249 ENSRNOT00000029513 3 1 1 80 14 110734470 110734488 ATGAGAAGACTTGGGTGCT 59 110734532 110736567 AGACATCATGCCCTAATGC 58 NA Rattus norvegicus 81 Fdft1 ENSRNOG00000021314 ENSRNOT00000032089 2 1 1 80 15 46346279 46346297 CCTGACGTCATCACCTACC 60 46345188 46346235 AATGGCCATTACCTGTGGA 59 NA Rattus norvegicus 81 Olr399 ENSRNOG00000030855 ENSRNOT00000046196 1 1 1 60 3 16039626 16039644 TCCTCTGCACTATACCCTC 58 16039662 16039686 GGAAATTACTACTAGAAGGACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccne2 ENSRNOG00000008055 ENSRNOT00000010696 3 1 1 80 5 24436991 24437939 TCTGCCAGACTTAAGCTGG 59 24437983 24438001 TTGTCATGCACGTATCTGC 59 NA Rattus norvegicus 81 Olr943 ENSRNOG00000050255 ENSRNOT00000047855 2 1 1 93 7 7833041 7833064 TACAAAGCATGAGGCATTTGG 60 7833116 7833137 GCTGATGATGCAGATGTATGAC 60 NA Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 1 2 2 80 11 68179557 68179576 CTTTCTAAGGTCTTGGAGGG 57 68165990 68179515 GGTTTCAAACTGAGGAACTG 57 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 1 2 2 80 7 24660068 24667070 GGTGATCATGAATCAGGCA 58 24653189 24660025 TCTTTCATTGACCCTTCTGG 58 NA InUTR Rattus norvegicus 81 Klk15 ENSRNOG00000033805 ENSRNOT00000038353 1 1 1 80 1 100194508 100194629 GAGTCACAAGTCACAAGTGAG 59 100194671 100194689 TTGTTGCAAGATGCCTCAG 59 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863,ENSRNOT00000042180 2 2 2 81 7 143415834 143415852 CAAGATGGAGATCAGCGAG 58 143415133 143415791 ACCTTTACACTGCTTCTTCAC 59 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261,ENSRNOT00000031173 1 2 2 74 1 84639146 84640103 TGGGTCAGTGACATTTAGGG 60 84640140 84640158 TTCTGAGTAGCATCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Fuca1 ENSRNOG00000009325 ENSRNOT00000012455 2 1 1 80 5 154273749 154273767 AAATGGCCTCAAGACTCAG 57 154273810 154277320 TCAGGCTTGTACCTATTCAC 57 NA Rattus norvegicus 81 Eva1b ENSRNOG00000024818 ENSRNOT00000064972 1 1 1 62 5 144160738 144160756 GATGACTCCAGCCTGTCAG 60 144160782 144160800 CTCAGGGTTAGCTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tctex1d2 ENSRNOG00000001758 ENSRNOT00000002397 3 1 1 81 11 71598264 71601517 CCAGCAAAGGTTTAGACCC 59 71598201 71598221 AGAATATTCAGCACCTGTCAG 58 NA Rattus norvegicus 81 Inpp5b ENSRNOG00000048506 ENSRNOT00000067762 3 1 1 80 5 142780404 142781747 ACAACTGGGATACCAGTGAG 59 142781789 142781808 GCTGACTGATGTTCTTTCCC 59 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000075235 3 1 2 61 1 212872543 212872565 CCCTGTCATTTATTCTCTGAGGA 60 212872583 212873292 AGACAAATAACTTTCTGAGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143,ENSRNOT00000086745 3 3 3 80 3 93684519 93684539 ACTCAATATCCTGCCCATCTC 60 93684361 93684478 GGACTGAGATTCTCATCGGG 60 NA Rattus norvegicus 81 Tmem223 ENSRNOG00000019266 ENSRNOT00000026141 3 1 1 66 1 224971089 224971108 GATACGGGTTAGCTGTTGGT 60 224971751 224971769 GAGTAGAGGAGACCAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC680217 ENSRNOG00000022941 ENSRNOT00000035257 1 1 1 60 1 154132140 154132158 GCATAGACCCTCACCTCTG 59 154132182 154132200 AGCTTCACCTCCTTATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckap4 ENSRNOG00000008016 ENSRNOT00000010601 3 1 1 81 7 24939664 24945232 TCGAGCAGAAGGTACAGTC 59 24945276 24945295 AGATCCTGTTTATGCTGGGA 59 NA InUTR Rattus norvegicus 81 AC117925.6 ENSRNOG00000060514 ENSRNOT00000090828 1 1 1 87 4 114852978 114853090 TGCTTCTTCAGTACAGGCT 59 114852611 114852629 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Copz2 ENSRNOG00000009225 ENSRNOT00000055464 1 1 1 80 10 84724501 84725229 ACATCTTAAGGAAGAACGTGG 58 84725270 84725289 CAACAATTTCATCCAGCACC 58 NA Rattus norvegicus 81 Dhtkd1 ENSRNOG00000023587 ENSRNOT00000065978 1 1 1 80 17 76333996 76336294 GATGTATGTTCAGTCAAGAATGGAG 60 76336332 76336350 CCCAAGGCAAGTGTTTCTG 59 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 1 2 2 80 5 139711372 139711392 TTTCCGAGTACAAGAACTACC 58 139708847 139711331 TCTGCACTGATCATCTTCAC 58 NA Rattus norvegicus 81 Dppa1 ENSRNOG00000043293 ENSRNOT00000067312 1 1 1 80 10 31698135 31698156 TATATTGGAACCTCTGTGTCTG 57 31695637 31698097 TCTTCTGTGTCTGTACTTTAGG 57 NA Rattus norvegicus 81 LOC100912697 ENSRNOG00000009354 ENSRNOT00000012388 1 1 1 60 3 2396650 2396668 AGACAGCACTACACCAGTC 59 2396692 2396710 TTGACTAGCAGCTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rint1 ENSRNOG00000022182 ENSRNOT00000035034 2 1 1 80 4 7878847 7878867 TTGAAGACACTTGGCAAACTC 59 7874310 7878808 TGATGAAATCGTAAGTACCTGC 59 NA Rattus norvegicus 81 Atic ENSRNOG00000015511 ENSRNOT00000021105 1 1 1 80 9 78865662 78865683 ATCTTAGCACGCAATATTCCAG 59 78865718 78867946 GTTACAGACAACAACTCTTATGAGG 60 NA Rattus norvegicus 81 Actrt3 ENSRNOG00000027908 ENSRNOT00000030700 1 1 1 95 2 116416752 116417615 GTCCATCAGCTATCCAGTG 57 116417673 116417692 TTCAGGTTCAGGTTGTAGTC 57 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 2 2 2 80 1 72772157 72772176 TCATGGATCTCCTATTGCGT 59 72772216 72772319 CTTCATTGAGCCAATTGAAGAC 58 NA Rattus norvegicus 81 AABR07051244.1 ENSRNOG00000047422 ENSRNOT00000074437 1 1 1 81 3 2992948 2993482 TGACCAGGATGATTTCTCTGG 60 2992887 2992905 CTTTGGGTTGTTCCCAACG 60 NA Rattus norvegicus 81 Appl2 ENSRNOG00000008174 ENSRNOT00000010986 1 1 1 80 7 26289409 26292304 TGGTTCAGAGCATTCAGGT 59 26292348 26292366 CACTGACTGAAAGCAGCTC 59 NA Rattus norvegicus 81 Rasgrp4 ENSRNOG00000033744 ENSRNOT00000048677 3 1 1 80 1 88089024 88089165 GAACAGCTAGTGGAGAAGTC 58 88089207 88089226 CTTCTCAAAGTCCTCCAGAG 57 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490,ENSRNOT00000086297 3 2 2 80 4 116714025 116718285 AGAAACTCAAGAACCAGGTG 58 116712279 116712299 GCTCTTCCATTGCTATTACCA 58 NA Rattus norvegicus 81 Sp6 ENSRNOG00000023551 ENSRNOT00000038572 2 1 1 64 10 84958440 84958458 ACTACGAATCGTGGTTCCG 60 84958486 84958504 ATGAAGGTCCCACCAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000086783 1 1 4 80 14 85883639 85886712 GAAAGAAGGAGTGAAGCAGAG 59 85886754 85886772 GTGGCAGCTCTAGAGTCTC 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000090532 2 1 4 80 14 85881927 85883262 GAAAGATGAGCTTCCCAAATACTC 60 85883297 85883319 AACGAGGCAGATATAAGACTGAG 60 NA Rattus norvegicus 81 Hand1 ENSRNOG00000002582 ENSRNOT00000003486 1 1 1 167 10 43252637 43252655 CTACTTGATGGACGTGCTG 58 43250993 43251012 TTAATCCTCTTCTCGCTTGG 57 NA DesignNoJunction Rattus norvegicus 81 Hand1 ENSRNOG00000002582 ENSRNOT00000003486 3 1 1 168 10 43252637 43252655 CTACTTGATGGACGTGCTG 58 43250992 43251012 TTTAATCCTCTTCTCGCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175,ENSRNOT00000045087 3 2 2 80 8 113992341 113992361 GTATCATCATGTTGGTTGGCT 59 113988786 113992301 CAGCTACAGCCAAACTTACAC 60 NA Rattus norvegicus 81 Olr776 ENSRNOG00000047253 ENSRNOT00000044181 2 1 1 60 3 103066271 103066294 GCTCTACATATTAAGCATGACTGG 60 103066234 103066252 AGGGTCAATGGTCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trit1 ENSRNOG00000014274 ENSRNOT00000019587 1 1 1 80 5 140753228 140753539 AGTTTCATCCAGGGTAGCA 58 140753579 140753601 GTGGTAACTTCTCTTGTTCTCAG 59 NA Rattus norvegicus 81 LOC100362643 ENSRNOG00000042804 ENSRNOT00000067815 2 1 1 60 4 142970063 142970085 GGGTTCATTACATGATCCATGAG 59 142970025 142970044 GGAAGAGGCTGTCTAAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rusc2 ENSRNOG00000045843 ENSRNOT00000072869 2 1 1 80 5 58878707 58878813 TCTGAATGGTCAGATCGCA 59 58878856 58878875 GGAGGCTTCTCAGTTAAGGA 59 NA Rattus norvegicus 81 Harbi1 ENSRNOG00000043204 ENSRNOT00000065462 2 1 1 82 3 80617050 80622649 TAGCTGGCTTCTTGGTGAC 60 80622695 80622713 ACTCTGCTGGAGTTTCAGG 59 NA Rattus norvegicus 81 LOC680700 ENSRNOG00000011484 ENSRNOT00000015278 1 1 1 147 5 139933531 139933549 CTGTGATGAAGTCAAGGCC 59 139933291 139933310 GATCAGAGACTCAGAGACCA 58 NA DesignNoJunction Rattus norvegicus 81 Scgb3a1 ENSRNOG00000002718 ENSRNOT00000051916 2 1 1 61 10 35133580 35133599 TCACCGCCATCTTTCTAGTG 60 35133623 35134267 GAAGAAAGCAACGCCAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Tmem130 ENSRNOG00000025235 ENSRNOT00000039149 1 1 1 80 12 11820064 11820082 CTGGGTCACTGCTGTAGAC 60 11820125 11823618 ACCAGGGACTCTTTAATGGG 59 NA Rattus norvegicus 81 Dnajc12 ENSRNOG00000051960 ENSRNOT00000082430 1 1 1 80 20 26893183 26893201 ATACTGAACTACAGGCCGG 59 26893245 26902525 AATTTGCTCAACCGAGGAG 58 NA Rattus norvegicus 81 LOC691037 ENSRNOG00000038215 ENSRNOT00000058186 3 1 1 60 4 99168327 99168345 TCAGAAAGATGGCAGAGGA 58 99168369 99168387 GTATCTCCAGGGCTGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gkn1 ENSRNOG00000008838 ENSRNOT00000012218 3 1 1 85 4 119144028 119144046 GGACGTGAATACATTCGGG 58 119143275 119143979 GGTTTGGTCCTGGAATCTC 58 NA Rattus norvegicus 81 U2af1l4 ENSRNOG00000024497 ENSRNOT00000038154 3 1 1 81 1 89017576 89017727 AAGGACAAGGTTAACTGCTC 58 89017771 89017789 GTTTGTTGTGAAGTCGGGA 58 NA Rattus norvegicus 81 RGD1562515 ENSRNOG00000024604 ENSRNOT00000007636 2 1 1 60 4 101392384 101392404 TTTAACTTTGGTGCCTTTCCC 59 101392344 101392365 CGGTTTGGTAAATTTGGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360,ENSRNOT00000066549 3 2 2 81 5 151107319 151112100 ACGATCGAAAGAAGGTGGA 59 151107256 151107275 TCTCTGGTCTTCTGAAGGAC 59 NA Rattus norvegicus 81 AABR07059201.1 ENSRNOG00000021533 ENSRNOT00000036164 1 1 1 60 4 8502116 8502134 TTTCATGGGCTTGAGTGAC 58 8502074 8502092 AAGAATCTTGCCGATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Siglec8 ENSRNOG00000022640 ENSRNOT00000048947 1 1 1 80 1 99584928 99586031 CTGACTCAGTATCCACAATCCT 59 99584869 99584887 CGCTACAGATGAGACGGAG 60 NA Rattus norvegicus 81 LOC102555599 ENSRNOG00000050957 ENSRNOT00000071564 1 1 1 60 3 76114636 76114659 CTGGCTAACATCTTCAATATGGAC 60 76114599 76114618 AGAATTGGACCATACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phb-ps1 ENSRNOG00000006625 ENSRNOT00000008661 3 1 1 60 10 68926053 68926071 TTATCTTTGACTGCCGCTC 58 68926011 68926030 AAGTCTTTGCTACCAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim65 ENSRNOG00000024145 ENSRNOT00000046026 2 1 1 81 10 104677673 104677961 AGTCAGATTGAGAGTTCAGCC 60 104677612 104677630 GCTTCTCCAGAACCTGGAG 60 NA Rattus norvegicus 81 Arrdc2 ENSRNOG00000019009 ENSRNOT00000025956 2 1 1 133 16 20353232 20353394 CTTCCAGCTGCCTATCTCC 60 20353489 20353509 GTTCAATGACAGTGAACACCT 59 NA Rattus norvegicus 81 Slc39a8 ENSRNOG00000012508 ENSRNOT00000033413 2 1 1 80 2 241030132 241057262 ACTTCAACCAGTGTCTGTC 57 241057306 241057324 AGTTCGAGCTGGTTATCTG 57 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000046867 ENSRNOT00000074301 3 1 1 60 1 88453208 88453226 GTGAGAAACCGTATGGCTG 59 88453250 88453268 GCAAGAGTGGAGAACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxph1 ENSRNOG00000008939 ENSRNOT00000011833 3 1 1 60 4 35279248 35279266 ACCTTATTCCGAGCAAGAC 57 35279290 35279308 AGGCTCCTGAAGATCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erich4 ENSRNOG00000037798 ENSRNOT00000031326 3 1 1 103 1 82409462 82409480 GGCCCTTATGTCTTCAGGG 60 82408573 82408591 CCAACAGCTGAACATCCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07040622.1 ENSRNOG00000003194 ENSRNOT00000004262 2 1 1 90 X 106518955 106518973 CTATGGCATTAGCCCACAG 58 106519025 106519046 CACAAAGGTCTCTTCTGTGAG 59 NA Rattus norvegicus 81 Hrasls ENSRNOG00000001711 ENSRNOT00000002329 1 1 1 80 11 75135393 75135412 TTCCGTCCTTGTTATCAGCA 60 75132748 75135350 GGGAATGCCATCTACAGGT 59 NA Rattus norvegicus 81 Ncoa3 ENSRNOG00000005616 ENSRNOT00000007768 3 1 1 80 3 162767676 162767943 CTATCAGGAAGCTTACATTCATGG 60 162767979 162768000 GCACTCACAATAGTTCCATCAG 60 NA Rattus norvegicus 81 Lcn8 ENSRNOG00000017161 ENSRNOT00000023062 1 1 1 80 3 2874046 2874145 GTGCTCAAGTACTTCACTCG 59 2874188 2874206 TTGGTCTGCTGTCATTTCC 58 NA Rattus norvegicus 81 Ern2 ENSRNOG00000018974 ENSRNOT00000025699 3 1 1 80 1 192129540 192129635 CCTCCTTGCAAGAGTATGTG 58 192129479 192129497 ACATCATCTGTTGCAGCAC 59 NA Rattus norvegicus 81 Zp4 ENSRNOG00000027506 ENSRNOT00000038938 3 1 1 80 17 65501938 65502236 GGTGGACAGGTATACCTGC 60 65502280 65502298 AGCAGGACAGATAACCGTG 60 NA Rattus norvegicus 81 AABR07011698.1 ENSRNOG00000028120 ENSRNOT00000035482 2 1 1 84 2 166330807 166330827 TTTATGTTTGTCCGGTGGAG 58 166330742 166330760 AGAGCTTCATTCCCTTTGC 58 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 3 2 2 84 10 67476597 67477098 CTGGAAGAGATTTCTTCAGTCG 59 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Aftph ENSRNOG00000005411 ENSRNOT00000056944 2 1 1 80 14 104958232 104958250 CTTCAGCAGCTTCCAAAGG 59 104946167 104958190 GGTTCAGTAAAGCTGTCTGAG 59 NA Rattus norvegicus 81 B3gnt8 ENSRNOG00000020606 ENSRNOT00000027964 1 1 1 80 1 82420103 82420124 CTGGAAAGATAACAGACTCTGG 58 82420165 82420883 TCTGGTGAGACTGGTTTGG 59 NA InUTR Rattus norvegicus 81 Olr651 ENSRNOG00000047268 ENSRNOT00000048750 2 1 1 60 3 77110152 77110175 TCTCTACTCTTTAAGGAACCACAG 60 77110115 77110133 GACACAAGTGAACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1245 ENSRNOG00000052884 ENSRNOT00000078277 1 1 1 60 4 1591778 1591798 GTTGTGTCCTGACATCAATGG 60 1591817 1591838 TACAAGAGTGGATTGCATATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564865 ENSRNOG00000038361 ENSRNOT00000058413 3 1 1 80 17 69468524 69468543 TAGGAGAGGCTATTCGAAGC 59 69468583 69476407 TACTCCAAAGCTTTGTAGTGAG 58 NA Rattus norvegicus 81 Nxt2 ENSRNOG00000019168 ENSRNOT00000025912 1 1 1 80 X 113514339 113515075 AACCAGTTCATGAGCAAGC 59 113515116 113515137 TGTTTCCATCAAACTTCACCAC 60 NA Rattus norvegicus 81 Smad6 ENSRNOG00000009173 ENSRNOT00000012155 2 1 1 87 8 68953285 68953308 GTCCGATTCTACATTGTCTTACAC 60 68898698 68953239 AGACATGCTGGCATCTGAG 60 NA Rattus norvegicus 81 Pex1 ENSRNOG00000025991 ENSRNOT00000038136 1 1 1 80 4 27672393 27672413 GAGACTTTACAGTTCTCGTGG 59 27672077 27672351 AAGTCAATCCTTCCCTGGT 58 NA Rattus norvegicus 81 Lancl2 ENSRNOG00000006810 ENSRNOT00000008948 2 1 1 80 4 88550425 88550443 TGCAGCAAATGGAAGAAGG 59 88541429 88550381 AAAGTGCTATGCCTGTCCA 59 NA Rattus norvegicus 81 Alkbh3 ENSRNOG00000021678 ENSRNOT00000030784 1 1 1 80 3 82891878 82897155 CAAATCCTCACTGGCTTCC 59 82891816 82891834 GCAAGGAGTTGAAGGTGTG 59 NA Rattus norvegicus 81 Calcb ENSRNOG00000011074 ENSRNOT00000014764 1 1 1 81 1 184272776 184273036 CCTTTCAGGTCAGCTTTGG 59 184273081 184273099 TCAATGCAGCAAGCAAGAG 59 NA Rattus norvegicus 81 Olr268 ENSRNOG00000053711 ENSRNOT00000087448 2 1 1 60 1 172752805 172752826 TAGTCCACTGCTTTATTCAACC 59 172752846 172752865 TACTACAAGCAACTGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp157 ENSRNOG00000001323 ENSRNOT00000030757 3 1 1 81 12 18476508 18476526 TGATCTTGAGGTTGGAGCA 59 18468409 18476463 TCAAGAACACCTGGGAGAC 59 NA Rattus norvegicus 81 Gpr139 ENSRNOG00000023863 ENSRNOT00000032796 1 1 1 80 1 188855293 188895130 GGGTTACCAGCAAATATCTTGAC 60 188855235 188855258 AAGATAGTTGTAGGAGGACTTCTG 60 NA Rattus norvegicus 81 Asmt ENSRNOG00000001324 ENSRNOT00000001791 2 1 1 95 12 18524115 18524134 TGATCTCCCTGATGTCATCG 59 18522681 18524057 GAACGGAAGAAGTCACCAG 58 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240,ENSRNOT00000082161,ENSRNOT00000034969 2 4 4 80 4 15710915 15720303 TGATAACAATGTGCTGGAGG 58 15710854 15710875 AGTCCAAAGATAGACCATAAGG 57 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 2 2 2 80 10 74096983 74097003 TTGTGAAGATTTGCTGCTTCC 60 74089086 74096944 TGATACTCTGGATCAACAGGTC 59 NA Rattus norvegicus 81 Serpinc1 ENSRNOG00000002783 ENSRNOT00000046512 3 1 1 80 13 78824694 78824712 GGCAAATGGGAATGTCTGG 59 78824756 78825243 CCTTTCCTTGTGACAGCTC 59 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366,ENSRNOT00000088169 2 2 2 81 5 74114360 74116531 ACATTCCACATTCAAAGCGAG 60 74111620 74111641 CTGGTAGTTATGGACTTCAGGA 59 NA Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 2 1 1 67 5 103230303 103230321 GCCTTCCATGTTCCTAACC 58 103229330 103230272 TTTGGAAGTTTCTCCAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Pmch ENSRNOG00000004632 ENSRNOT00000006174 1 1 1 82 7 28655438 28655456 TTGCTCCTTCTCTGGAAGG 59 28655502 28655840 GCCTGTGTTCTTTGTGGTC 59 NA Rattus norvegicus 81 LOC498316 ENSRNOG00000048659 ENSRNOT00000073985 3 1 1 132 13 109646500 109648748 GTGTTACTAAAGGACCGCA 58 109648844 109648862 CTTCTCGTTCAGCTCTTCC 58 NA InUTR Rattus norvegicus 81 Arl16 ENSRNOG00000049235 ENSRNOT00000071433 1 1 1 80 10 109637541 109638119 ATTCGCTCTTGTTCATGATGG 59 109637481 109637499 CAGAAAGAAGGCCCAAGAG 58 NA Rattus norvegicus 81 Gimap7 ENSRNOG00000038740 ENSRNOT00000059167 2 1 1 97 4 78354395 78357313 TGTCCTGCAGAAGTCAAGG 60 78357372 78357392 TTTCCCTACCAGAACAATCCT 59 NA InUTR Rattus norvegicus 81 Rnf6 ENSRNOG00000000968 ENSRNOT00000001282 1 1 1 102 12 10577157 10577177 CAGAGAAGAAGCCTATTACCA 57 10577241 10578794 GGATGTTATGTCTCCAGGG 57 NA Rattus norvegicus 81 Nfkbib ENSRNOG00000020063 ENSRNOT00000027212 2 1 1 80 1 86941844 86941865 ATGAGGATGATAAGCTTAGCCC 60 86941225 86941807 CATATTCATCGCCTTCATCTCTG 60 NA Rattus norvegicus 81 Rn60_13_0816.1 ENSRNOG00000051095 ENSRNOT00000076020 3 1 1 60 13 76626513 76626533 GACAGCTACTATAACCTGGAC 57 76626555 76626573 AGACTGGACTTGGTTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 1 2 2 80 2 165522901 165523969 TTGTTAAGGAGCAAAGCCTG 59 165522840 165522860 AGGCTATTTCTGCAGTAACCA 60 NA Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 3 2 2 81 13 90820852 90822274 CTTACAGCTGGACAAGTTCC 59 90820790 90820808 CAAGGCATCCTCATTTCCC 59 NA Rattus norvegicus 81 Plin2 ENSRNOG00000007060 ENSRNOT00000009749 3 1 1 82 5 104998966 105000463 TCCATCTGATTGAATTCGCC 59 104998903 104998921 CTCCACCCATGAGACAGAG 59 NA Rattus norvegicus 81 Naa11 ENSRNOG00000002031 ENSRNOT00000002776 3 1 1 86 14 13828452 13835277 ATTGCCTGAGCATCTCTGG 60 13835327 13835345 CAGGGAGGATACTGCAGAG 59 NA InUTR Rattus norvegicus 81 Ccdc77 ENSRNOG00000037206 ENSRNOT00000056200 2 1 1 80 4 152863696 152863714 AGAGGGCTTCAAGACAGAC 59 152861779 152863654 TTCATGGTTGCCTTATAGAGC 58 NA Rattus norvegicus 81 Glra4 ENSRNOG00000002391 ENSRNOT00000052302 1 1 1 80 X 107439144 107439164 CCTCTGATTTCTTGGACAAGC 59 107438802 107439104 CAGGTGGACCTTTGAAATTGG 60 NA Rattus norvegicus 81 Kif26b ENSRNOG00000028624 ENSRNOT00000017784 3 1 1 80 13 96843995 96886085 CATGGGCAAGGTGAAAGTC 59 96843933 96843951 ACCTTCAGGAAAGAGCTGG 59 NA Rattus norvegicus 81 LOC100910717 ENSRNOG00000052664 ENSRNOT00000079808 3 1 1 80 1 255519199 255520628 ATTTGAGCGAGAACAGATCAC 59 255520669 255520688 TACGCACTGATTCCAATCTC 58 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412,ENSRNOT00000091052 3 2 2 80 10 46156591 46156610 TATCGCTGCAACTTCCTAGG 60 46155735 46156549 CACGACAACTACGAACTCAG 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 1 2 3 80 5 173257587 173257817 ACATTCCATGGAGCATGTG 58 173257860 173257879 ACATCTCTGATTCGTCTTGG 58 NA Rattus norvegicus 81 Ihh ENSRNOG00000018059 ENSRNOT00000024419 3 1 1 80 9 82209683 82211249 CTCTGTCAAGTCTGAGCAC 58 82209621 82209639 CCAGTTTCTAGGTGGACCT 58 NA Rattus norvegicus 81 Mir146b ENSRNOG00000040448 ENSRNOT00000062201 1 1 1 60 1 266089500 266089521 CCTGAGAACTGAATTCCATAGG 58 266089542 266089560 CCAGAACTGAGTCCCTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc3 ENSRNOG00000010352 ENSRNOT00000014182 2 1 1 80 15 104199941 104199961 TGGGAAAGAAGTTACTTGCAG 59 104200003 104210916 TATCAGGGTCACCATCGAC 59 NA Rattus norvegicus 81 Dnajc3 ENSRNOG00000010352 ENSRNOT00000014182 3 1 1 80 15 104222039 104222267 CTTCTCCAAGGATGAGAAGC 58 104222310 104222328 GCATTTACATTGTCGGGCT 59 NA Rattus norvegicus 81 Atf6 ENSRNOG00000024632 ENSRNOT00000029202 3 1 1 80 13 89163814 89163834 GTTACCAAGGCTTCTTTGACG 60 89107740 89163772 ATAGCAGGTGATCCCTTCG 59 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 3 2 2 80 8 71648890 71651340 CCATCCAGTTGCTTTCTCG 59 71651381 71651402 TCAAGAAGTTCTCTGGTTTGAC 59 NA Rattus norvegicus 81 Akr1e2 ENSRNOG00000017165 ENSRNOT00000023133 2 1 1 80 17 69373307 69374853 ACTAACCAGATTGAATGCCAC 59 69374893 69374913 GGTCACAGACACATTTCTTCC 59 NA Rattus norvegicus 81 Ndst1 ENSRNOG00000019014 ENSRNOT00000025881 3 1 1 80 18 55963017 55963035 CTCCGAGACCTTTGAGGAG 59 55961155 55962975 GGGAAGAATTCCATGTACCAG 59 NA Rattus norvegicus 81 Ganab ENSRNOG00000019724 ENSRNOT00000035650 2 1 1 80 1 225114468 225114635 TGACCCTGAGCAGTATACCT 60 225114678 225114696 AGTCTGAAGAACGCCTCAC 60 NA Rattus norvegicus 81 Hacd2 ENSRNOG00000038761 ENSRNOT00000003013 2 1 1 80 11 68900818 68925158 GTGTCAAAGAGGTGCAGAG 59 68900756 68900776 AGGAGTAACGGATAATTTCCG 58 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 1 2 2 80 7 97900291 97900312 GCAACGATATTGAAGTTCTCAC 58 97899431 97900251 GCAGAGCTTTCTCGTATTCC 59 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000045922 ENSRNOT00000071339 3 1 1 82 1 81579795 81581120 CTGCTCAGATATGCTGACC 58 81581165 81581184 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Txndc16 ENSRNOG00000006334 ENSRNOT00000008372 1 1 1 80 15 19487231 19496636 GCAGTTAAATTGAAAGGCAGG 59 19487171 19487190 TTGCTTCGTACATACATCGG 58 NA Rattus norvegicus 81 RGD1310647 ENSRNOG00000045919 ENSRNOT00000051570 2 1 1 93 17 57814844 57815627 CAGGACCAGATTTCCATAAAGG 59 57814772 57814790 AGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467,ENSRNOT00000081958 2 2 2 80 9 82439443 82440804 GGAGCTCTTTGATGACTTGG 59 82440845 82440865 GAGAAAGTAAAGAAAGGGCCG 59 NA Rattus norvegicus 81 Zbtb8os ENSRNOG00000008226 ENSRNOT00000074628 3 1 1 80 5 147540340 147541331 CTGATGTCCAGTTACATGCA 58 147541373 147541392 TCATGTAACCAAACATGGCC 59 NA Rattus norvegicus 81 Slc25a34 ENSRNOG00000021526 ENSRNOT00000022820 2 1 1 125 5 160179552 160179570 TTCTACTGCTACAGCCTGG 59 160178187 160179464 TGTCTTGACCAGGTAAGCAG 60 NA Rattus norvegicus 81 Kbtbd2 ENSRNOG00000013809 ENSRNOT00000018442 2 1 1 80 4 87100035 87100054 AGTGTTAATTGTTGAGGGCA 58 87092959 87099992 AACATGGCCCTGAAATAGG 58 NA Rattus norvegicus 81 Fam96a ENSRNOG00000017119 ENSRNOT00000022999 2 1 1 88 8 71792268 71795003 CCATTCAAACACAAGCTGGA 59 71797641 71797662 CGCTCTTTGTCATTTATCTGCT 60 NA Rattus norvegicus 81 Efhd2 ENSRNOG00000013783 ENSRNOT00000018864 3 1 1 102 5 160410285 160411462 CTTCCGGGAGTTCCTTCTG 60 160410201 160410221 GGAGACATCAATCTCGGAGAG 60 NA Rattus norvegicus 81 Fut9 ENSRNOG00000008475 ENSRNOT00000011393 1 1 1 123 5 40131988 40237348 GCTGGGATCGATTTAGAATGTG 60 40034639 40034657 GCCTTTGGATGTTGAGGTC 59 NA InUTR Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 1 2 2 80 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066376 117066587 CACATGAAGCTATAACTACCGC 59 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000023329,ENSRNOT00000087067 2 2 2 80 1 153999711 154008676 AACAATGAGGAGCTTCTCAG 58 154008718 154008737 CAGGTCATCATACTCCTTCC 57 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 2 2 2 80 14 14951698 14953680 CTGAATCTGGGTCCATTTGTG 59 14951634 14951654 TAAGAGCGAGTCAGTCTTCAG 59 NA Rattus norvegicus 81 3281a3 ENSRNOG00000056415 ENSRNOT00000085617 3 1 1 74 20 2297210 2297228 GGGAGGAGCAAAGATTCCA 59 2297154 2297172 CCTTACACCATCTCAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 1 2 2 80 1 178154690 178154711 GGATAACACCAGATTTGTTGTG 58 178151809 178154649 CCAGATCCAAACATCCTGC 59 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 3 2 2 80 1 178139641 178145860 AGATTGGGAATAGAAGGCTACC 60 178139582 178139603 GTTGTAAATGACTTCTGGACGG 60 NA Rattus norvegicus 81 LOC100364002 ENSRNOG00000050457 ENSRNOT00000072249 3 1 1 80 X 124000705 124001347 CGAACAAGGAAGGACATCG 59 123999890 123999909 AAGAGATCTTCTCATCCGGA 58 NA Rattus norvegicus 81 Triqk ENSRNOG00000039924 ENSRNOT00000061328 1 1 1 92 5 26559819 26565288 TCGGCATAAAGGAGGTTGG 60 26565344 26565362 TATTCGTGGACAGTCGGAG 59 NA Rattus norvegicus 81 Ddx25 ENSRNOG00000012260 ENSRNOT00000017307 2 1 1 80 8 36759740 36760011 ACAGTCCCAAACATAGACGG 60 36759201 36759219 TGAATTGGCTGCCAAATCC 59 NA Rattus norvegicus 81 LOC367975 ENSRNOG00000047100 ENSRNOT00000071436 3 1 1 81 X 124158480 124158498 ACCTTACACTCTTGTGCCA 59 124157651 124158436 ATCATGGTGGCAATTGTTGG 60 NA InUTR Rattus norvegicus 81 Rps6 ENSRNOG00000049025 ENSRNOT00000073270 1 1 1 80 5 105200068 105200087 AGCTTCGTACGTTCTATGAG 57 105199664 105200025 CCACATAACCCTTCCACTC 58 NA Rattus norvegicus 81 Cgrrf1 ENSRNOG00000010178 ENSRNOT00000013912 1 1 1 80 15 23619367 23627794 CCTGGTATTAGGATGGTTTGG 58 23627835 23627854 AAAGCTCTTGTGCTGAACTG 59 NA Rattus norvegicus 81 LOC290415 ENSRNOG00000038078 ENSRNOT00000057935 3 1 1 60 15 73180341 73180362 CTCTGTGATTTCATCACTGTCC 59 73180302 73180321 CATTGAGCAAGCCTGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 1 2 2 83 14 17145160 17146239 AAAGCCTGAAGACAGAAATCG 59 17143385 17143403 GAAGGATGGGACTTCGGAC 60 NA Rattus norvegicus 81 Sntn ENSRNOG00000027383 ENSRNOT00000039347 3 1 1 74 15 14501947 14501968 CTGCTTCAAACCCAATTTAGGA 59 14498609 14498627 CTCAGAAAGGAGGTCTCGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911839 ENSRNOG00000047136 ENSRNOT00000074866 2 1 1 60 1 171162329 171162348 TCAGCAGATACTTACAGCAC 58 171162288 171162308 CTAGGAGAATTACAATGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933,ENSRNOT00000084640 3 2 2 81 5 117588832 117590172 TTAACACCCTGAGGGAACTC 59 117590215 117590234 CCCAGAATACACTGTAGCAC 58 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984,ENSRNOT00000003801 2 2 2 81 10 43885363 43885381 CAACTCTCAAGTGGTGCTC 59 43884711 43885318 GGTATGTTGTCGACACCTG 58 NA Rattus norvegicus 81 Stc1 ENSRNOG00000015075 ENSRNOT00000020728 2 1 1 80 15 50894433 50900088 CTTCTCCAACAGATACTACAACAG 59 50900126 50900145 CTGTCTCTGATTGTGCTGAC 59 NA Rattus norvegicus 81 Olr537 ENSRNOG00000034047 ENSRNOT00000047002 3 1 1 60 3 74606680 74606703 CTATGATAGGTATCTTGCCATCTG 59 74606643 74606661 CGTGGGAGTCATAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360573 ENSRNOG00000020093 ENSRNOT00000027225 2 1 1 113 19 38619880 38620034 CAAAGCCTTAGACAAGCGC 60 38620110 38620129 ATCAGGTTGATCTGGTGCTC 60 NA Rattus norvegicus 81 Tbx21 ENSRNOG00000009427 ENSRNOT00000012538 1 1 1 80 10 85036235 85036255 CGACAGGAAGTTTCATTTGGG 60 85034598 85036193 CAGGACGATCATCTGGGTC 60 NA Rattus norvegicus 81 Rn60_X_0681.1 ENSRNOG00000051048 ENSRNOT00000075949 1 1 1 60 X 67212135 67212154 AATGGAACAATCAAGGCTGG 59 67212094 67212112 AGATGGTGATGGGTTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_1360.2 ENSRNOG00000050918 ENSRNOT00000075024 3 1 1 80 4 71279039 71279057 TCTCCTGGAAGGACAAAGC 59 71278033 71278995 ATCCGATCTGCACCTTCAG 60 NA Rattus norvegicus 81 RGD1561738 ENSRNOG00000042995 ENSRNOT00000068548 2 1 1 60 13 73661151 73661169 CTTCTTGCCCACAAATGCT 59 73661190 73661211 TTGTCTCATAGCTTTGCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam7 ENSRNOG00000014054 ENSRNOT00000019209 1 1 1 80 15 49466120 49467088 CTCAGATGCAAGGAAGAGG 58 49466058 49466077 GTTTCTGTAGCAGGGATAGC 58 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000071332 1 1 3 116 19 49518635 49518653 CGTAGGAGCGTCTAAGTGG 60 49510927 49518555 TAACATCTTCTTCCCGCCC 60 NA InUTR Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 1 3 3 82 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509312 49509330 TTCTTTGACCAGATGCAGG 58 NA DesignNoJunction Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000084324 2 1 4 60 20 3115994 3116012 GACCATCTGGTCAGAACCT 59 3116033 3116054 TACTCTTTGGTAGGAGTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prnd ENSRNOG00000021260 ENSRNOT00000050900 2 1 1 60 3 124545583 124545601 GGCAACAAGTACTATGCGG 59 124545624 124545643 AGCCTTCGTAGTAGATCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcsk1 ENSRNOG00000011107 ENSRNOT00000015185 3 1 1 80 2 91485157 91493634 TGATGATCGTGTGATATGGG 57 91485096 91485115 TTCAATGCTGAGTCTCTTGG 58 NA Rattus norvegicus 81 Zkscan1 ENSRNOG00000001335 ENSRNOT00000045379 1 1 1 106 12 19242212 19242230 CTCATCCTGGAGGAATGGG 59 19242300 19245244 CTGTTCTCAGAACCCTGGG 60 NA Rattus norvegicus 81 Ggact ENSRNOG00000027040 ENSRNOT00000019158 2 1 1 81 15 109316924 109316943 CTTCCTGAAGGATCCATGTG 58 109308822 109308840 CATACACGAAGATGTGGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Etaa1l1 ENSRNOG00000006185 ENSRNOT00000008135 1 1 1 60 14 102292388 102292409 TGAAATGCTTGAACTCTTTCCC 60 102292349 102292367 ACAAACTGCCTTCTGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifi30 ENSRNOG00000019387 ENSRNOT00000026225 2 1 1 82 16 20429359 20430174 GTCAACGAGAAACCGTTGAC 60 20430306 20430324 ATGTCTGGCTTCTCTGTCC 59 NA Rattus norvegicus 81 Socs4 ENSRNOG00000011377 ENSRNOT00000015120 2 1 1 159 15 24056460 24068949 GATCCGTCAAGAAAGTGCC 59 24069072 24069090 GTCAGCACTTCTACTCCGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672,ENSRNOT00000078647 2 2 2 80 10 12989804 12989906 GACTCAGACTGGATGGTCTG 60 12989743 12989761 AAAGACCGTAGTGGGTGTG 60 NA Rattus norvegicus 81 RGD1565660 ENSRNOG00000046931 ENSRNOT00000050518 3 1 1 82 14 15681807 15681828 ATTCAATTGTCTCCAGCATCTC 59 15681871 15682649 TCATCAGGCTCCTGAAGAC 59 NA Rattus norvegicus 81 Vsx1 ENSRNOG00000042220 ENSRNOT00000061469 1 1 1 80 3 146488431 146488451 CACTACCCTGATGTGTATGCT 60 146487402 146488390 CTGGAACCAGACCTGTATCC 60 NA Rattus norvegicus 81 Olr1433 ENSRNOG00000038413 ENSRNOT00000058503 2 1 1 80 10 44293692 44293755 ATCTACATGTACATGCAGCC 58 44293795 44293816 AGTGACAATGTTGTAGAAGAGG 58 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193 3 1 2 80 2 232122283 232122303 GGGTGTAAACAACTTCTTGCT 59 232122344 232129899 CCTTGTCTCTTCTCCTTGGG 60 NA Rattus norvegicus 81 RGD1559999 ENSRNOG00000048778 ENSRNOT00000051054 3 1 1 86 14 15707507 15708296 GAATCAAGTCCTAGGGTGC 58 15707439 15707458 AGGGAATCCAAGTCTTTCTG 57 NA Rattus norvegicus 81 Grxcr2 ENSRNOG00000039325 ENSRNOT00000060260 1 1 1 140 18 36314972 36321999 GCGAATGACCATAAGCCTC 59 36314850 36314868 TTCTTCAGCCACCTCTTCC 59 NA Rattus norvegicus 81 AC136013.2 ENSRNOG00000058724 ENSRNOT00000090938 2 1 1 94 14 17613996 17615309 GGACTGACATTTCATGTATTCC 57 17613923 17613942 CAAATGCCTGCAGTATTCAC 58 NA Rattus norvegicus 81 E2f6 ENSRNOG00000004449 ENSRNOT00000060499 2 1 1 80 6 42100135 42100154 CATCACCAATGTCTTGGACG 59 42100195 42101877 TTCAGGTCAGATCCTATCCAC 59 NA Rattus norvegicus 81 LOC683295 ENSRNOG00000009160 ENSRNOT00000039417 1 1 1 80 7 143272838 143273017 CCTGAATAAGGATGTAGACACTG 59 143272780 143272798 TCGATCTCATCTTCCGGAC 59 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000027791 ENSRNOT00000038497 3 1 1 60 14 52662082 52662100 TGGGATGCCAGTTCATCTG 60 52662123 52662142 CATTGTGGCTCTGTAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa13 ENSRNOG00000007980 ENSRNOT00000064847 1 1 1 80 7 98239817 98239836 CTTATCTAGCAGGACATCGG 57 98236516 98239776 ACCTCCTCTAAGTCCTTACTG 58 NA Rattus norvegicus 81 LOC100909611 ENSRNOG00000032126 ENSRNOT00000044305 1 1 1 60 3 76495719 76495739 AGTACTCTGCTGTCATCTCTG 59 76495679 76495700 AAGCATGTTATCTGGCTAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000064073 1 1 2 80 5 138482349 138482368 CCCTTCTTCAACTCAGAGGA 59 138482408 138485639 AGACAGAAATATGCACTTTGCC 60 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 3 2 2 80 4 9982181 9982199 TCTCTATCCCAAACGTGCT 58 9982243 9990349 TGTCAAGCTCCTCTTTGGA 59 NA Rattus norvegicus 81 AABR07001592.3 ENSRNOG00000059551 ENSRNOT00000075019 1 1 1 60 1 54035679 54035697 CCTCAAGAGACAACAGTGG 58 54035637 54035660 GATCCTCATCATGATTTCTACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.1 ENSRNOG00000026715 ENSRNOT00000031809 3 1 1 60 13 79239017 79239036 CTGTACCACCTTACAATGCT 58 79238976 79238997 ATGAGTAGAGCTTTCTGATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a8 ENSRNOG00000006367 ENSRNOT00000008613 1 1 1 80 7 29444719 29451766 CTGGCTTTGAATCAAGTTACAG 58 29451807 29451825 TGTGCAGTAGAATGTGCAG 58 NA Rattus norvegicus 81 Olr1468 ENSRNOG00000052919 ENSRNOT00000026857 3 1 1 81 10 60126662 60126680 TCATCACCCAATTCCTCCT 58 59973583 60126617 TACATGGACAGGAACAGGG 59 NA Rattus norvegicus 81 Serf2 ENSRNOG00000015277 ENSRNOT00000056151 2 1 1 90 3 113416433 113416451 CATGAAGAAGCAGAGCGAC 59 113416505 113417153 CATGATCTCCGAGTCCCTC 59 NA InUTR Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 1 2 3 92 10 13306432 13308507 CATCAAAGGCATCCAGCTG 59 13308562 13308581 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Ppp2r5a ENSRNOG00000000068 ENSRNOT00000000078 1 1 1 80 13 110036077 110036095 CATCGATAAGATCCTGCCC 58 110035475 110036036 AGAGCTACAATAGTCTGATTCC 57 NA Rattus norvegicus 81 Yrdc ENSRNOG00000025424 ENSRNOT00000039870 2 1 1 83 5 142846513 142848677 GTGTTGAGGAGTTCCAAGAC 59 142848722 142848741 ACTCAGGGCTTTCACTATCC 59 NA Rattus norvegicus 81 Plxdc1 ENSRNOG00000021536 ENSRNOT00000043561 1 1 1 80 10 85904683 85904703 TGGTCTTGTCCTTTGATTTCC 59 85904065 85904641 CCATGAAGATGAAGCCTCC 58 NA Rattus norvegicus 81 Zrsr1 ENSRNOG00000009639 ENSRNOT00000012767 1 1 1 60 14 107751271 107751289 CGAGAGGAAAGCTACAGCA 60 107751312 107751331 TCTTGGAGGAGTGGTATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362751 ENSRNOG00000031052 ENSRNOT00000042825 2 1 1 60 14 44375514 44375534 GCAGAGGAGAAGAAAGATGAG 58 44375474 44375492 ATCCCATGTTGTCATCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arfgef2 ENSRNOG00000007485 ENSRNOT00000010054 2 1 1 80 3 163630583 163631441 CACATTGTCTCAACCATCTTCC 60 163631481 163631500 CTCAGACAAGCACTTCACAG 59 NA Rattus norvegicus 81 Vom1r20 ENSRNOG00000028807 ENSRNOT00000041434 1 1 1 60 1 61133417 61133438 ATCTACTGTTCTCATCTTGCAC 58 61133458 61133477 TTTGTTTCTGGGAATGTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 1 2 2 80 3 60721405 60726731 AAGTCTGGCTATCATACTGCT 59 60721345 60721363 GATCGCTTCTGTATGTGGG 58 NA Rattus norvegicus 81 Cxcl11 ENSRNOG00000022298 ENSRNOT00000031667 2 1 1 81 14 17196953 17196971 AAATGGCAGCAATCAAGGA 58 17197015 17197126 GCCTTCAGGGTAACAATCAC 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 1 2 2 80 2 226696193 226696682 ACAAGAATGAGGCATGGCT 60 226696131 226696151 GGTTTATGTCACTGCTGTGTC 60 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 2 2 2 80 2 226696192 226696681 CAAGAATGAGGCATGGCTC 59 226696130 226696149 TGGTTTATGTCACTGCTGTG 59 NA Rattus norvegicus 81 Olr425 ENSRNOG00000007986 ENSRNOT00000010501 2 1 1 60 3 21148276 21148297 GAACTGGCTATATTCTTGGAGG 58 21148237 21148257 GTACAATAAGGGAACAAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb11 ENSRNOG00000001803 ENSRNOT00000002462 2 1 1 80 11 81748737 81751952 CTGCTTATGAGGTTCTGTCAG 59 81748677 81748695 GATGCCCATCTTTCAAGCC 59 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 1 2 2 80 16 21069203 21069222 GCATTGATGAGGTGAATGGT 59 21069264 21069695 ATCCTTCTGTGTCCTTCTCG 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 3 2 2 81 19 52240451 52240469 AGTGGAAGATGCAGACCTG 59 52240513 52242701 TGGAGATGTGACCTCTTCAG 59 NA Rattus norvegicus 81 MGC105649 ENSRNOG00000050251 ENSRNOT00000073569 3 1 1 95 3 114773051 114773913 CGACGTGGTTATTGATCGA 58 114775248 114775266 TTCCATTCCTGGTTGATGG 57 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 2 2 2 80 10 13865061 13865080 CGGGCTACAAAGGATTACTG 59 13865120 13865298 TTCAAGTACCGTGATAATGTCC 58 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386,ENSRNOT00000021306 2 2 2 81 4 179685074 179693129 TGTATCAAGTTCTCTTGGAGAC 58 179685014 179685033 ATTGGAGGAGTTAACAAGCC 58 NA Rattus norvegicus 81 Eif3j ENSRNOG00000016459 ENSRNOT00000022437 3 1 1 104 3 113976922 113976940 GTTCTCTATGGAGGACCCG 59 113977007 113989406 TCCCAGTTATCCTTCACGTC 59 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304,ENSRNOT00000046771 3 3 3 80 14 17553201 17553220 CACAATCTTTCTGCAGTTGC 58 17553261 17553790 CTCGTCCACTCTGTAATTCTG 58 NA Rattus norvegicus 81 Vrk3 ENSRNOG00000026517 ENSRNOT00000035748 1 1 1 84 1 100776907 100776925 CAAGTGGCTTTATGGGTCC 59 100776971 100780464 GTCCTGATACTTCTGCTTCTG 58 NA Rattus norvegicus 81 Il15ra ENSRNOG00000018706 ENSRNOT00000025252 1 1 1 80 17 70466274 70467724 ACCTCAAGTGTATCAGAGACC 59 70466214 70466232 GTTGTGAGGTCACCTTTGG 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031,ENSRNOT00000010367 2 2 2 80 X 127564106 127636120 GACTAATGCTTTCTGCTCCC 59 127636162 127636181 AGGGTGTTCATTGACATCTG 58 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 1 3 4 80 18 6777410 6777429 GATGTTACTGGTTCCGTTGC 60 6776914 6777369 GGCTCCGGTATAATTGATTGC 60 NA Rattus norvegicus 81 Dusp6 ENSRNOG00000023896 ENSRNOT00000037844 2 1 1 94 7 41476894 41477921 CTTTCATAGATGAAGCCCGAG 59 41477977 41477995 AAGGTAAGCCACTGTCACC 60 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120 1 1 2 98 8 116095000 116095547 GGAGAGGATTAAGTCTGCCC 60 116095607 116095626 CAGAGGATGGGAGATCACAC 60 NA InUTR Rattus norvegicus 81 Gsdma ENSRNOG00000007943 ENSRNOT00000048349 3 1 1 80 10 86587713 86588617 CTGGGACTACAGGGATCCT 60 86588660 86588679 TTGTCTCACTCGATAAGCCA 59 NA Rattus norvegicus 81 Mex3c ENSRNOG00000015777 ENSRNOT00000041227 2 1 1 62 18 69550124 69550142 ACATGTCGCTGAGATTGTC 58 69568755 69568773 TTTGTCTTGGCTCTCAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Fbxl15 ENSRNOG00000019509 ENSRNOT00000026471 2 1 1 210 1 266077162 266077180 CAACTCGAGCACCTAGACC 60 266077818 266077836 CCATGTCCTGGAGTAGCAC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07072118.1 ENSRNOG00000047955 ENSRNOT00000049304 2 1 1 80 10 44187969 44187988 CACTCCGTTATCCTGTCCTC 60 44188031 44188050 ACATGAAGCCATCCAGGAG 60 NA Rattus norvegicus 81 Tmem185b ENSRNOG00000047257 ENSRNOT00000072632 1 1 1 60 13 35555366 35555384 CGACATGACAGGTCTTTGG 59 35555405 35555426 AGATAAACTGCAGGATGTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1179 ENSRNOG00000033150 ENSRNOT00000050101 3 1 1 60 8 20728925 20728944 ATATCAGTGCTTGGGAACCT 59 20728966 20728985 TATGGAGGTGGGAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eid1 ENSRNOG00000008452 ENSRNOT00000042411 1 1 1 60 3 117939018 117939036 CGCTGATGGTTGTCAATCG 60 117939057 117939078 TCTCGATCAATGATCTCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 2 2 2 84 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762102 70762120 GGATGATCAGGGAGATGCC 60 NA Rattus norvegicus 81 Actr1b ENSRNOG00000016789 ENSRNOT00000076692 2 1 1 84 9 43269281 43269462 AAATCAAGATCTCTGCTCCTC 58 43269060 43269078 TTCTTGAAGGTGTCCAGTG 57 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 2 3 3 80 8 72479958 72479981 GAGAAGAATAAGTGGTACATCCTC 59 72477102 72479922 GTGAGGACTTAGTAAAGTCTGG 58 NA Rattus norvegicus 81 Gstk1 ENSRNOG00000016484 ENSRNOT00000022275 1 1 1 80 4 71622431 71622635 TCATGAAAGACAGTGGAAACC 59 71622674 71622695 TCAGGAGAGGAATCTCTTTGAG 59 NA Rattus norvegicus 81 Tle6 ENSRNOG00000006350 ENSRNOT00000008360 3 1 1 80 7 10983847 10983865 CAAGTCTCCCTCAGACCTG 59 10983909 10984005 CTTCCAGAAGACTCCTGGG 59 NA Rattus norvegicus 81 Repin1 ENSRNOG00000008239 ENSRNOT00000011032 2 1 1 158 4 78233377 78233401 GATAGGGATGTCTTTATTGCTACAG 59 78233517 78234742 TCTTCCTCTGCCTGAAGAC 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351,ENSRNOT00000080083 1 2 2 80 10 46989304 46989322 CCGGATGTATGTGGGACTC 60 46989141 46989264 GAATCATAACCTTCCACAAGTCC 60 NA Rattus norvegicus 81 Lpl ENSRNOG00000012181 ENSRNOT00000016543 1 1 1 80 16 22554699 22554717 ACTCTGTGTCTAACTGCCA 58 22550647 22554656 CATACATTCCTGTCACCGTC 59 NA Rattus norvegicus 81 LOC100912186 ENSRNOG00000050613 ENSRNOT00000071489 2 1 1 60 4 1611810 1611831 TTATGTACCTAAAGCCCTCCTC 59 1611851 1611870 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3572 ENSRNOG00000060004 ENSRNOT00000079634 3 1 1 63 1 64136044 64136062 TAAGTGGAGGCCAGTTTGG 60 64135999 64136019 CAAGTGTAAACAGGCTGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Necab2 ENSRNOG00000015084 ENSRNOT00000020341 1 1 1 80 19 52109007 52110847 GAAAGGAACTGCTTCCATGTG 60 52110889 52110907 CTCTGTCTCCCAGAACTCG 59 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 3 2 2 81 18 71525019 71575016 ATGCTCCAGAAGGACTTCAC 60 71524957 71524975 ACAGGAAGGTGATGAAGCC 60 NA Rattus norvegicus 81 Pigm ENSRNOG00000007735 ENSRNOT00000010551 3 1 1 60 13 90760429 90760449 ATGTTGTGGTTCATAGGACAG 58 90760466 90760489 CTTGAAACTCTAGAACGTATGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif2b2 ENSRNOG00000006467 ENSRNOT00000008730 3 1 1 80 6 109049356 109050740 CACAGAAGGAGACATTCTGGA 60 109050781 109050800 AAGAGGGTAATGAGGTCAGG 59 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679,ENSRNOT00000035317 2 2 2 80 18 73611303 73611321 TGTTCGAAAGGTGGAAGAG 57 73611365 73615670 ACAAGGTGGACTTGAAGAG 57 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000049723 ENSRNOT00000074596 3 1 1 86 16 5082802 5082820 TCTGAAACTCTGGCTGGAG 59 5087447 5087465 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Uso1 ENSRNOG00000002301 ENSRNOT00000003277 3 1 1 80 14 17397099 17397117 TGTGGGTTACTACAACAGC 57 17394753 17397058 AGTATTTATGGTCTCAGTCAGG 57 NA Rattus norvegicus 81 Prdx5 ENSRNOG00000021125 ENSRNOT00000028687 2 1 1 90 1 222165403 222165757 CTGTTCCAAGACCCATCTG 58 222165331 222165349 ATTAACACTCAGACAGGCC 57 NA Rattus norvegicus 81 Susd4 ENSRNOG00000003562 ENSRNOT00000052407 1 1 1 80 13 101280721 101280740 GTTCTGAGTACCTTGAGTGC 58 101280783 101300085 GTGGACAAACTTCCAGAGC 59 NA Rattus norvegicus 81 Il22ra2 ENSRNOG00000012259 ENSRNOT00000016354 2 1 1 88 1 15096054 15098453 AGTACAAGACGTATGGACAGG 59 15098502 15098521 GGTTTCTTTGGTCAGGTCAC 59 NA Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000071569 2 1 2 154 12 24652982 24653000 TGCTTGGCCTCTAACTACG 60 24653118 24655207 TGCATGCTCTTCTCCAGTC 60 NA Rattus norvegicus 81 Patl2 ENSRNOG00000017061 ENSRNOT00000022964 1 1 1 80 3 114070094 114070208 CCCAGATTGAGAAGATGTTCC 59 114070034 114070053 TCAAGTGGTAGTGTTGTGGT 59 NA Rattus norvegicus 81 Mef2b ENSRNOG00000020400 ENSRNOT00000027661 3 1 1 80 16 21003424 21003442 GGTGCTGCTCAAATACACC 59 21003114 21003380 CTCCTCTTCAGTGTCTGCA 59 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 3 4 4 77 2 250224218 250224596 CAACGTGTATCATCTCAAGTG 57 250224161 250224180 ATGTAGTGAAACCGATCTCC 57 NA DesignNoJunction Rattus norvegicus 81 Eml6 ENSRNOG00000037462 ENSRNOT00000056706 3 1 1 80 14 114300301 114300319 CCAGATGGATCTCAGTTGG 57 114297590 114300260 GACCACTTCTGTCATATCTCTG 58 NA Rattus norvegicus 81 Ttc17 ENSRNOG00000010495 ENSRNOT00000014088 1 1 1 80 3 83238625 83248535 GCCCTTAGACTTGAAAGCAC 59 83238564 83238585 TGACATCTTTGTTTCCTCTGAC 59 NA Rattus norvegicus 81 Loxhd1 ENSRNOG00000017410 ENSRNOT00000023487 3 1 1 80 18 73753148 73753171 CACTGAGAAGTACATGAAAGATGG 60 73753209 73756629 GAGTACAGCACAATGTCCAG 59 NA Rattus norvegicus 81 Mir378b ENSRNOG00000048754 ENSRNOT00000072291 3 1 1 60 5 5575670 5575688 GGACTTGGAGTCAGAAGGT 59 5575628 5575649 ATGGTCAGTGATAGTCCATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmnat3 ENSRNOG00000013585 ENSRNOT00000018411 2 1 1 131 8 106371056 106417035 ACCAGACAGGAAAGTACCAG 59 106417129 106417147 TCCAGTCAGATGTCTGCAG 59 NA Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622,ENSRNOT00000045954 1 2 2 80 5 139401814 139401832 ACTCCTCCGAAATCCAACC 59 139401874 139416783 CATTCAGCCGAAATCCTAGAG 59 NA Rattus norvegicus 81 Six6 ENSRNOG00000006296 ENSRNOT00000008880 1 1 1 136 6 95817356 95817374 CAGGACCCATATCCCAACC 60 95817474 95818474 TGCTGGAGTCTGTTCTTGG 60 NA Rattus norvegicus 81 Eif2s2 ENSRNOG00000017447 ENSRNOT00000023786 2 1 1 81 3 150397200 150397685 TATGAGGAGTTGCTGAACCG 60 150397138 150397158 CAAATTTCCTCTTCTCGCCAG 60 NA Rattus norvegicus 81 Rbp4 ENSRNOG00000015518 ENSRNOT00000021055 3 1 1 80 1 256813022 256813195 GTCTTCTGAGCAACTGGGA 59 256812960 256812979 TCATCTTGAACTTGGCAGGA 59 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754,ENSRNOT00000088558 2 2 2 80 1 7400419 7405331 CTGATCAAGATGGAGATGTAACAG 59 7400362 7400380 CTTGGGTAGCTTCCTCTCC 59 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754,ENSRNOT00000088558 3 2 2 80 1 7384256 7385720 ACTGGAGAAAGTGCATTGG 58 7384194 7384213 TTTCTTGGATGGTCTGTTGC 59 NA Rattus norvegicus 81 RGD1309995 ENSRNOG00000008331 ENSRNOT00000011326 3 1 1 80 7 26316950 26316968 GCTCCAGAATTTCGAAGGC 59 26314916 26316909 TACAAAGTTCAGAGTGAGAGGA 59 NA Rattus norvegicus 81 Ift74 ENSRNOG00000008075 ENSRNOT00000011336 2 1 1 80 5 113668563 113675533 GGAATTTGACCTCAGACAGTC 59 113675571 113675593 GCTCTTCTGTCATCTTACTTTCC 59 NA Rattus norvegicus 81 AABR07066677.1 ENSRNOG00000049939 ENSRNOT00000074599 1 1 1 135 9 12346196 12346882 ACAGTTCCTACCGCATCAG 60 12346981 12346999 GTCTCCACAGAGGATGCTG 60 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 2 3 3 101 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613721 80614138 CATCAGTACCGTCAGTTCCT 59 NA Rattus norvegicus 81 Bco1 ENSRNOG00000012027 ENSRNOT00000016880 2 1 1 80 19 49648463 49648481 GACTTCTATGCCACCACAG 58 49648522 49650378 GTAATCAACCTTCTCCAAGGTC 59 NA Rattus norvegicus 81 AC107531.1 ENSRNOG00000032984 ENSRNOT00000051398 2 1 1 60 1 168845274 168845292 GGAGTCACACTCAGAGCAG 60 168845313 168845334 ACCTGCATTTGATGAGAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtg1 ENSRNOG00000018860 ENSRNOT00000025574 2 1 1 80 1 212615396 212615774 AGAATCCAGGTATGTGAGCG 60 212615816 212615835 CTCCACACTTTGAATCCGAG 59 NA Rattus norvegicus 81 Kctd2 ENSRNOG00000023764 ENSRNOT00000067838 1 1 1 80 10 103973112 103974989 TCGGACAAGGATGAGACTG 59 103975033 103975051 ATGGCGGAGGTAGTTTAGG 59 NA Rattus norvegicus 81 RGD1562510 ENSRNOG00000031251 ENSRNOT00000043897 1 1 1 60 15 19575792 19575811 GGGTGAAGAAACTTCATCCT 58 19575751 19575772 CAATGTCTGATTTCACGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cipc ENSRNOG00000011111 ENSRNOT00000014980 2 1 1 147 6 110975753 110975771 AGAGGAAAGTCCCATCGAG 59 110975882 110985833 CATTCTGAGCTCCCATCTG 58 NA Rattus norvegicus 81 Slmo1 ENSRNOG00000017954 ENSRNOT00000024144 2 1 1 80 18 63211625 63211645 CCTTGACGTACATCAAAGAGC 59 63211687 63213426 TGAGCGTGATATTGGTGGA 59 NA Rattus norvegicus 81 Zdhhc22 ENSRNOG00000011285 ENSRNOT00000015046 1 1 1 80 6 111013714 111015555 GGAGCTGGGAATGTAATCG 58 111013652 111013673 AGGGAAATGCAAAGAAAGTAGG 59 NA InUTR Rattus norvegicus 81 Tnp1 ENSRNOG00000017611 ENSRNOT00000023769 3 1 1 124 9 80295386 80295404 CTCATGGCATGAGGAGAGG 60 80295082 80295298 ATTGCGACTTGCATCATCG 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185,ENSRNOT00000088661,ENSRNOT00000040742 3 3 3 80 X 120948050 120948071 TTCTAGAAGAGAATGCCTTTGC 59 120948109 120952370 TATCTGTCATCTCTTGGATGGA 58 NA Rattus norvegicus 81 Akr1b1-ps2 ENSRNOG00000023285 ENSRNOT00000018151 3 1 1 60 4 148951719 148951740 TAAGGTCTTTGACTTTGAGCTG 59 148951680 148951699 CCTGTTGTAGCTGAGTAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1396 ENSRNOG00000048331 ENSRNOT00000045600 3 1 1 60 10 34713271 34713289 CATCATGCACCCTGTTCTC 59 34713313 34713331 CAAGAAGCCTCCTACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr598 ENSRNOG00000045832 ENSRNOT00000039963 1 1 1 60 3 76052758 76052776 TTCTGTGATGTCCCTCCTC 58 76052795 76052818 CTAGTTCATTAACCTCCGTATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tubb5 ENSRNOG00000061216 ENSRNOT00000079854 3 1 1 99 20 3422692 3423995 GGTGCTAAGTTCTGGGAGG 60 3424058 3424076 ACACAGAGATTCGGTCCAG 59 NA Rattus norvegicus 81 Sh2d5 ENSRNOG00000014909 ENSRNOT00000020069 3 1 1 85 5 156622504 156622523 ATCAGCTGTCACAGAATGTC 58 156622571 156622711 CAGCTCCTTCCCATTACTG 58 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747,ENSRNOT00000082150 1 2 2 80 12 44935818 44935838 TTTAAGCTTGTGATCCTGGAC 58 44935877 44936877 GAACTTCTCAATCACTCGTCTC 59 NA Rattus norvegicus 81 Olr79 ENSRNOG00000015764 ENSRNOT00000021102 1 1 1 60 1 168244958 168244978 GATACAGCCTGATTTCCATCC 59 168244998 168245018 ATGTTCCCTGCAATAGAAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 2 1 1 60 8 43480642 43480693 GGTAAAGCTGAAGACAAGGA 58 43480601 43480619 TGTCCTTAACCAGGTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408,ENSRNOT00000068594 3 2 2 80 19 42856389 42911946 AAGTTGTATAAGCACCTGCAG 59 42856329 42856347 GTAGTTGCACAGGACACAG 59 NA Rattus norvegicus 81 Olr219 ENSRNOG00000047623 ENSRNOT00000045360 3 1 1 60 1 170932982 170933003 AACATTGTCTCTACTGTGATCC 58 170932943 170932961 TAGAGAAGACCTTGAGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam131a ENSRNOG00000045653 ENSRNOT00000073526 2 1 1 85 11 82879544 82879730 CCTGCATGGTATTTCCCAG 58 82879477 82879495 ATTCGATAAGGTGAGCCAC 57 NA Rattus norvegicus 81 Mfsd12 ENSRNOG00000039858 ENSRNOT00000061191 3 1 1 80 7 11219010 11219028 GGTGATGTACTTGAGTGGC 58 11218511 11218968 AAGTAGGTCATGTTTCTCCCT 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 1 2 3 80 13 78928337 78928355 TAGTCCCAAGTTCCTGGTG 59 78925973 78928294 TCATCTACCAAGTCTCTGCA 58 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109,ENSRNOT00000081482,ENSRNOT00000091828,ENSRNOT00000045400 2 4 4 80 5 141170570 141170870 AAGAAGAGAAAGTGGTAGAAGAGG 60 141170513 141170531 CCAGAGTAGACACCCAACC 59 NA Rattus norvegicus 81 Dcp1b ENSRNOG00000007340 ENSRNOT00000009832 1 1 1 80 4 151258662 151258683 GAGCCCATTACTAAAGACTTGG 59 151258723 151271882 TCCATAAATGGACAGTGTGC 58 NA Rattus norvegicus 81 Dcp1b ENSRNOG00000007340 ENSRNOT00000009832 2 1 1 80 4 151258663 151258684 AGCCCATTACTAAAGACTTGGA 59 151258723 151271883 TTCCATAAATGGACAGTGTGC 59 NA Rattus norvegicus 81 AABR07035074.1 ENSRNOG00000028592 ENSRNOT00000067752 1 1 1 80 12 3923064 3923083 CTTCCAAGGAATGCCAAGTG 60 3922955 3923021 CACTCAGACCCAGTTGGAG 60 NA Rattus norvegicus 81 Olr625 ENSRNOG00000050217 ENSRNOT00000051292 2 1 1 60 3 76626383 76626404 GACATTTGCTATACCTCCTGTG 59 76626344 76626364 TTCTCCTTACAAGCAGATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009508.1 ENSRNOG00000021867 ENSRNOT00000032342 3 1 1 87 2 100955157 100955176 TCAAGACGACTACAGTTGCA 59 100955226 100955565 GATGTCCATGGAAGGAGGG 60 NA Rattus norvegicus 81 Efnb1 ENSRNOG00000006877 ENSRNOT00000009635 3 1 1 80 X 68901850 68901869 GACAACACTGTCAAGACAGC 60 68901911 68902162 GTTCACAGTCTCATGCTTGC 60 NA Rattus norvegicus 81 Cxcl1 ENSRNOG00000002802 ENSRNOT00000003778 2 1 1 80 14 18745002 18745138 CCAAACCGAAGTCATAGCC 59 18744940 18744959 ACAATCTTCTGAACCATGGG 58 NA Rattus norvegicus 81 Fcna ENSRNOG00000017063 ENSRNOT00000023022 2 1 1 80 3 2853070 2853088 TCCAGTACTGCTCTGTCTC 58 2852809 2853029 AGACCTACGATCTTAACATCTG 57 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 3 2 2 80 1 188088378 188090103 GGAGAATCTCCAGTCTGGA 58 188088316 188088334 CACTGAGAACACCGAACTC 58 NA Rattus norvegicus 81 Grem2 ENSRNOG00000003616 ENSRNOT00000004803 3 1 1 84 13 92897895 92987902 GTCATTGCAGGATGTTCTGG 59 92897830 92897848 CTGTTCTTCCGTGTTTCGG 59 NA InUTR Rattus norvegicus 81 Tipinl1 ENSRNOG00000037221 ENSRNOT00000056239 3 1 1 60 5 174108 174127 ACAGGAAGAAGGACAGTTGG 60 174067 174090 TTAGTCTAAGTTAGGATGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5b ENSRNOG00000012851 ENSRNOT00000017387 3 1 1 80 2 104362206 104362226 CCAGAAGAGGAGTTCTATGTG 58 104362265 104382543 TGGAAAGTCCATATCTTTCTCC 58 NA Rattus norvegicus 81 Slc8a3 ENSRNOG00000029871 ENSRNOT00000048606 1 1 1 80 6 104898110 104902632 ATCTCCAGAGGTGACAGAC 58 104898048 104898067 AATACTGGCTTTCCCATCTC 57 NA Rattus norvegicus 81 Gopc ENSRNOG00000000408 ENSRNOT00000057476 2 1 1 80 20 33488776 33488795 CTCCAGGCTGAAGTTTATGG 58 33487730 33488734 CTGTATTTGTTGGACCCTGC 59 NA Rattus norvegicus 81 Fev ENSRNOG00000017856 ENSRNOT00000024190 2 1 1 117 9 82145938 82146631 GTACCTACCAGATCCCGTC 59 82144124 82144143 TAGAAACTGCCACAACTGGA 59 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000029086 ENSRNOT00000044223 3 1 1 60 4 1471223 1471242 AATGCCAATCTCATCAACCA 58 1471263 1471283 TACAAGAAAGTTGGAGGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1516 ENSRNOG00000048690 ENSRNOT00000073002 1 1 1 60 10 61072028 61072049 TTCTTTGGGACAGTAATAAGGG 58 61072068 61072088 CCACTGAGTTAGAGGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpusd1 ENSRNOG00000023639 ENSRNOT00000015206 1 1 1 80 10 15100308 15100327 ATCAACTATGCCATTGGCAG 59 15100369 15100527 GTTCTCACAACCATGAGTGC 60 NA Rattus norvegicus 81 Zranb1 ENSRNOG00000017294 ENSRNOT00000023257 2 1 1 80 1 204996367 204996561 GGTTTCAAGGAGTTTATCTGCC 60 204996602 204996620 CCCTTGTATAGCCCAGAGC 60 NA Rattus norvegicus 81 Rn60_X_0730.2 ENSRNOG00000054824 ENSRNOT00000087822 3 1 1 60 X 72072906 72072925 TTAACAACACAGTACCGGTC 58 72072865 72072885 CCAATGTTAAGGATTCCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000017663 1 1 2 80 15 2739281 2739299 GAAGAAGGGAGACGGAGAG 59 2739342 2741971 CGAGTCCATCCTCTTTAGGT 59 NA Rattus norvegicus 81 Olr1385 ENSRNOG00000046800 ENSRNOT00000072557 3 1 1 60 10 34360886 34360905 GCCTCTTTGTCTGTCTTGTG 59 34360845 34360864 CGATCATAAGCCATGAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpm ENSRNOG00000023262 ENSRNOT00000036917 2 1 1 85 7 123470748 123472984 CAAATACAGCCTCCAGAAAGTG 60 123470684 123470702 CTGTGACAAGGAAGCACAC 59 NA Rattus norvegicus 81 Slc25a26 ENSRNOG00000012831 ENSRNOT00000065705 1 1 1 80 4 126528584 126532219 GATCCTTTCCTAATGCTGCTG 59 126532261 126532279 AGTGTGAAGTTGAGTCGGT 59 NA Rattus norvegicus 81 Slc25a26 ENSRNOG00000012831 ENSRNOT00000065705 3 1 1 80 4 126553817 126555284 TTAAGTGAAGAGGGCATCCA 59 126593958 126593976 CTGGACCAAGGAGAAAGGA 59 NA Rattus norvegicus 81 Olr557 ENSRNOG00000031264 ENSRNOT00000050634 3 1 1 60 3 75354534 75354553 GCTACTATCCCAAGAATGCT 57 75354575 75354594 CCAGCACAGAAATGTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 1 2 2 80 4 163393742 163395471 CACCCAACGAGTTAACACTG 59 163393681 163393701 CTTCTGTGTAGGCCTTAAAGC 59 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 1 2 2 80 2 197981408 197981426 TCTGAAGTTCATTGCCAGG 58 197975043 197981364 GTGAGGATTCTGTTCAGGG 58 NA Rattus norvegicus 81 Rn60_13_0844.1 ENSRNOG00000051105 ENSRNOT00000076665 2 1 1 60 13 79493502 79493521 GCTCCAATATGACTCTACCC 57 79493540 79493562 CTTCCTATTCTCATCCTTGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r43 ENSRNOG00000032226 ENSRNOT00000048195 2 1 1 60 1 67206127 67206147 CTCTGATGGACTGTATCTGGG 60 67206087 67206109 GAGAATACTCACCATGGAAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000056996 3 1 2 80 4 55011325 55011343 ATTATCAAACGCCTGCTGG 59 55010449 55011284 CAATATCCTCCTGATGTCATCC 58 NA Rattus norvegicus 81 Alms1 ENSRNOG00000022343 ENSRNOT00000045735 1 1 1 80 4 117446764 117446782 GAAAGCATTGAACACAGCC 58 117446825 117464573 ATTATACGGTTTGCCACCTG 58 NA Rattus norvegicus 81 Alms1 ENSRNOG00000022343 ENSRNOT00000045735 3 1 1 80 4 117467088 117467106 AGCTACAGAACCTGTTCCA 58 117467150 117467814 CTGCCAAGAGAACTCTCCT 59 NA Rattus norvegicus 81 Ubox5 ENSRNOG00000021230 ENSRNOT00000028834 3 1 1 84 3 123140405 123141940 CACTGCAACAAGGTGTCAG 59 123140339 123140358 TCCTAAAGCCATGGCTTCTC 60 NA Rattus norvegicus 81 RGD1560513 ENSRNOG00000033673 ENSRNOT00000052326 2 1 1 61 4 132296111 132296133 GGGTCTACATCAACTATTACGAC 59 132296072 132296090 AAAGGTGGAACTGTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068150.2 ENSRNOG00000054416 ENSRNOT00000073128 2 1 1 118 9 85968837 85985257 ATTCTACTGCAGGTCCAGC 60 85968737 85968755 GAGATGGAGCTCAACCTGG 60 NA Rattus norvegicus 81 LOC100360908 ENSRNOG00000043249 ENSRNOT00000066168 2 1 1 83 16 20464564 20466248 CCTTACATGTACAGGTGTTGC 59 20464501 20464524 GTCTGTATTGATTCTGTAGTTGGG 59 NA Rattus norvegicus 81 Wsb1 ENSRNOG00000012929 ENSRNOT00000017949 2 1 1 80 10 66597356 66602863 CAACGAGAAAGAGATCGTGAG 59 66597296 66597314 CCACCACATTTCTTGTCGA 58 NA Rattus norvegicus 81 Aasdhppt ENSRNOG00000005795 ENSRNOT00000008062 2 1 1 81 8 1444369 1444389 CAAGGAGTGGGAAACAATCAG 59 1443867 1444326 TTCTTTCAGTGCCCAATGC 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 1 3 3 60 13 79888255 79888274 ATCTATGCCCGGAAATACCA 59 79888297 79888315 GTTGTATCACCACACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000039998 1 1 2 63 20 3691053 3691071 CTGATCTGTCTGGGTCTGC 60 3690797 3690815 AGACTTTCTCCTCTGGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Atcay ENSRNOG00000020407 ENSRNOT00000041325 1 1 1 80 7 11373776 11373794 AAGTCCCTGATCATCGTCC 59 11373836 11374634 GAACTTGACACTGATGAAGGG 59 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027062 3 1 3 116 1 100600606 100600624 AATGACTTGGGTGTCCTGG 60 100601406 100601424 GTCTTCTGGAGACATGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 3 2 2 80 1 214247655 214247675 AACAACTCAGAAGAAAGGACG 59 214247715 214247965 GTGCAGCTTCTTCATGTACTC 59 NA Rattus norvegicus 81 RGD1311224 ENSRNOG00000009399 ENSRNOT00000012568 2 1 1 80 3 72862643 72867025 TACTTCTACATGGTTGCACTC 58 72862583 72862604 CTTTCGAAGATACATCACTTGC 58 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000045694 ENSRNOT00000071001 2 1 1 60 3 74906261 74906279 GTTGCCATCAAACACAGGA 59 74906219 74906240 AACTATAAGGTGGGAAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0683.1 ENSRNOG00000051137 ENSRNOT00000076199 3 1 1 60 X 67362028 67362048 TAGTCCTTGGTCAGTATCTGG 58 67361988 67362009 TTTAGCCATTCTCAGTTGAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr828 ENSRNOG00000048689 ENSRNOT00000051285 1 1 1 60 4 148624171 148624190 GCCTCTACATTATCCAACCA 57 148624212 148624231 AGAGACAGTAACGAGAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 1 2 2 81 14 21490739 21552670 ATAGCATGCTTCCAGTCAG 57 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 MGC114427 ENSRNOG00000023016 ENSRNOT00000037881 1 1 1 98 X 147494729 147495263 CATCAGTGTGAAGGTTTGTG 57 147495324 147495342 GCTGTTGTCAGTAGGTTCC 58 NA InUTR Rattus norvegicus 81 Nt5c2 ENSRNOG00000020179 ENSRNOT00000027351 3 1 1 80 1 266668766 266669717 CCCAGATATACCAGTTGTGAC 58 266668706 266668727 CCTTACATCCTGGAACATACTC 58 NA Rattus norvegicus 81 Sh2d1a ENSRNOG00000006263 ENSRNOT00000008444 1 1 1 80 X 128916740 128916758 TAACGCCTCTGCAGTATCC 59 128916797 128917737 AGATATCAGAATCTCTTCTCCCTG 59 NA Rattus norvegicus 81 Olr1432 ENSRNOG00000002858 ENSRNOT00000003818 3 1 1 60 10 44256874 44256893 GGAATCTTCTTGAGTGGCAG 59 44256833 44256852 GTGAGGAGATAGAAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrnb2 ENSRNOG00000020778 ENSRNOT00000028200 2 1 1 80 2 189089241 189092914 TGATGACCAGAGTGTGAGG 59 189089179 189089199 ACAAAGACAAAGATCCACAGG 59 NA Rattus norvegicus 81 Mapk8ip3 ENSRNOG00000033568 ENSRNOT00000042066 1 1 1 80 10 14289873 14298858 GCCGAGGAGAAATTCATCG 59 14289811 14289834 CTCATAATGTTCTACCTGGATCTG 59 NA Rattus norvegicus 81 Mapk8ip3 ENSRNOG00000033568 ENSRNOT00000042066 3 1 1 81 10 14289811 14289834 CAGATCCAGGTAGAACATTATGAG 59 14286695 14289771 GTCGGGAAATCTGATCTGC 58 NA Rattus norvegicus 81 Lpar6 ENSRNOG00000015577 ENSRNOT00000021430 3 1 1 60 15 55128438 55128456 TTCACTTCAGACACGATCC 57 55128479 55128498 CACTCCTTCTAACAGACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2ry14 ENSRNOG00000013872 ENSRNOT00000066948 2 1 1 85 2 149332512 149332530 AAGAATTCACCCTGCTGCT 60 149332444 149332463 AGACTTCTCTAAACGGCTGG 60 NA DesignNoJunction Rattus norvegicus 81 P2ry14 ENSRNOG00000013872 ENSRNOT00000066948 3 1 1 85 2 149332513 149332531 AAAGAATTCACCCTGCTGC 59 149332445 149332463 GACTTCTCTAAACGGCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Olr709 ENSRNOG00000055123 ENSRNOT00000082898 2 1 1 60 3 78525730 78525749 TTCACAGCTTGTATGAGCCA 60 78525689 78525708 TGACAATCTCAGTACCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbx1 ENSRNOG00000014706 ENSRNOT00000019739 2 1 1 91 1 104972465 104973290 CCAGAAGAGAAACTTCGCC 59 104972392 104972410 GATGAAGGGTTGGAACGAG 58 NA Rattus norvegicus 81 Zak ENSRNOG00000001515 ENSRNOT00000002068 2 1 1 80 3 59036721 59043305 ATATTCCTACGGTGTGGTTCTC 60 59043344 59043364 CAAGCGACTTGTAATCCTTCC 59 NA Rattus norvegicus 81 Dnmt3l ENSRNOG00000001212 ENSRNOT00000001610 1 1 1 80 20 11358297 11358317 GTGGATATGGTACTGGAAGAC 58 11358001 11358256 TTCGTACCTGATGACCTCTC 59 NA Rattus norvegicus 81 Rbbp4 ENSRNOG00000021492 ENSRNOT00000029177 2 1 1 80 5 147509254 147509508 TAAACCAGACCCTTCTGGAG 59 147509193 147509212 TTCCAAGAAAGCCCATAACC 58 NA Rattus norvegicus 81 LOC100912836 ENSRNOG00000023469 ENSRNOT00000047532 3 1 1 80 2 102452253 102453028 TCTTGAAAGTGTCCTGAGAGTC 60 102453067 102453087 AAGTCGCTGTAAGAAAGTCCA 60 NA Rattus norvegicus 81 Sec16a ENSRNOG00000019122 ENSRNOT00000064083 1 1 1 80 3 3871189 3871210 GAAGTAATAGCCAAGAGTGTCC 59 3870699 3871150 GGAAGCCATCTGAATCAACTG 59 NA Rattus norvegicus 81 Arl8b ENSRNOG00000055860 ENSRNOT00000080663 1 1 1 80 4 140870970 140870991 GTGAAGATATGATACCCACCGT 60 140871026 140872080 CTATGTCCCAGATCTTTATTGTGAC 60 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005,ENSRNOT00000068764,ENSRNOT00000079651 2 3 3 80 19 53491214 53491233 TGGAAGACATCTTCCACGAG 60 53490536 53491171 TCAGGCAGTTGTCGTACTG 60 NA Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 1 2 2 80 1 214011915 214011934 GTTGTTGTCATGGTGACTGG 60 214011974 214012284 GATGAAGTACAAGCGTAACAGG 60 NA Rattus norvegicus 81 Pcdhga7 ENSRNOG00000027290 ENSRNOT00000027015 3 1 1 60 18 30866391 30866410 ATGCTACAAGCTTCAAGTGG 59 30866432 30866451 CCAAGCCTACAAAGTGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabs1 ENSRNOG00000001950 ENSRNOT00000002670 3 1 1 203 14 21747172 21747191 ACTGCTCAAAGAAGAACCAG 58 21746398 21746420 GCTAACCAACTGTCTAAGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Csgalnact1 ENSRNOG00000013024 ENSRNOT00000017822 2 1 1 80 16 23069731 23073081 CAACATAGGTGGATTTGACCTG 59 23073119 23073140 TTGCTATGGAGATATTTCCGGT 60 NA Rattus norvegicus 81 Hps3 ENSRNOG00000031406 ENSRNOT00000050440 2 1 1 80 2 104815451 104819309 CATCACAAGCCAAAGCCTG 60 104815389 104815409 GTGTCCATGTATAGGTCCTCC 60 NA Rattus norvegicus 81 LOC100360002 ENSRNOG00000042869 ENSRNOT00000064931 2 1 1 60 10 89187370 89187390 AACTCTTATACCCTCACAGGT 58 89187330 89187349 AAGCAATGCCTCCATATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dynlrb1 ENSRNOG00000025715 ENSRNOT00000067854 2 1 1 80 3 150771306 150771324 GGAGGAAACACTCAAGAGG 58 150771368 150777947 TTGATGGGAATGCCTTCTG 58 NA Rattus norvegicus 81 LOC689991 ENSRNOG00000028362 ENSRNOT00000074427 1 1 1 80 9 73498059 73498077 TCTTCCAGAACTCCATGGC 59 73498118 73506081 GATCGGATTCCTTTATCCTGTG 59 NA Rattus norvegicus 81 Ssuh2 ENSRNOG00000005734 ENSRNOT00000007591 2 1 1 84 4 144309336 144309354 AACAAGACATGTGCCACCT 60 144308537 144309289 CAAACAGGCTGTTCTTCCAC 60 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830,ENSRNOT00000067665 2 2 2 80 10 84991719 84991739 CTCCACTCACTCTCCATATCC 59 84991780 84992873 GTACAGAGCTTCTTGCTCCT 60 NA Rattus norvegicus 81 Olr80 ENSRNOG00000015769 ENSRNOT00000021115 1 1 1 80 1 168283730 168283852 TAGTACCAGGTCTCCATTTCAC 59 168283671 168283693 CCAATCCAGATGTGAATAGACTC 59 NA Rattus norvegicus 81 Rassf7 ENSRNOG00000017109 ENSRNOT00000023219 1 1 1 107 1 214203901 214203919 TGAAGGTATGGGTGGATGG 59 214203990 214204166 GACCTGTCTGGCCTATAGC 59 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 1 2 2 80 2 195744536 195744554 GTTATCACAGCCATCAGCA 58 195744012 195744492 CGCTATTACCTGGTTCTCC 57 NA Rattus norvegicus 81 Basp1 ENSRNOG00000046313 ENSRNOT00000073915 3 1 1 61 2 77587227 77632424 CGAACTCCAAGATGGGAGG 60 77587184 77587203 CTCGTCGTTCACATTGTAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185,ENSRNOT00000085291 3 2 2 80 5 163006248 163006560 CAACAAGACAGGGTTACCAC 59 163006187 163006206 AACTCATGCTCCTCAAACTG 58 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 1 2 2 80 18 77291673 77291691 TCACTATGAGACGGAAGGC 59 77275848 77291630 AAGTAACCATGTAGCTGCAC 58 NA Rattus norvegicus 81 RGD1563220 ENSRNOG00000031532 ENSRNOT00000048783 1 1 1 60 15 44673066 44673087 AGTGACAGATATGACGAGATCC 59 44673027 44673045 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563220 ENSRNOG00000031532 ENSRNOT00000048783 2 1 1 60 15 44673025 44673043 CCTGGGTCCTAAGTCTGTG 59 44672983 44673002 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn21 ENSRNOG00000060568 ENSRNOT00000079697 2 1 1 80 6 122678801 122678820 AAACAGCAAAGTACGTGTGG 59 122672920 122678759 CCTGAGTTTGCAGGTTACAC 59 NA Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000084270 1 1 2 97 1 226742944 226760205 CAGGGTAGCAATAGTTAAACTGAG 59 226760261 226760279 TCTGCATTTCCTCCAGCTC 60 NA InUTR Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 3 2 2 80 18 86365384 86383889 GATCATAACTGATGGTGGAACC 59 86383928 86383948 AGGATGACAAGTAGCAGTGAG 60 NA Rattus norvegicus 81 RGD1309651 ENSRNOG00000017646 ENSRNOT00000023721 3 1 1 97 19 54187327 54204687 GTCTGAAAGGCTTTAAGATGTG 58 54187251 54187269 GATGATGTTGGGCACACTC 59 NA DesignRelaxed Rattus norvegicus 81 Tmtc3 ENSRNOG00000006749 ENSRNOT00000029045 3 1 1 80 7 40203652 40203676 GTACTTTACTACTTGTCGTGATCAG 59 40198341 40203615 CGGCTGGATTATCAAACCTC 59 NA Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000001564 1 1 2 80 20 10267392 10267410 CCTGTCTACAGAGTCCGAG 59 10267453 10271424 CCCACCACATCTTTGAACAC 60 NA Rattus norvegicus 81 Ndufv3 ENSRNOG00000001182 ENSRNOT00000001564 3 1 2 97 20 10267454 10271425 TGTTCAAAGATGTGGTGGGA 60 10271485 10271503 GTAAGAACTGGGTGGAGGG 59 NA Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000076021 3 1 2 123 12 11272960 11272978 AGGGTCTCCGGATAATGTG 59 11272855 11272873 AGTGTGACAGTGTTTCCTG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398,ENSRNOT00000067913 3 4 4 80 7 124235902 124238264 AGGACGTTCTAAAGACCAAGG 60 124235842 124235860 TGTTCTCCATGTACTGCGG 60 NA Rattus norvegicus 81 Olr811 ENSRNOG00000005403 ENSRNOT00000007157 3 1 1 60 4 72428295 72428314 CAAGCCGATGTACTTCTTCC 59 72428337 72428355 CACAGAGATGTACCAGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nqo1 ENSRNOG00000012772 ENSRNOT00000017174 3 1 1 84 19 38431463 38431892 CCTGGTGATATTTCAGTTCCC 59 38431938 38431956 TCCTGCTACAAGCACTCTC 59 NA Rattus norvegicus 81 Gpr17 ENSRNOG00000025745 ENSRNOT00000036537 3 1 1 60 18 24734412 24734430 CCTTGTGCAACTTGCTCTG 60 24734370 24734388 TTCCCTTCAAAGCTGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samd3 ENSRNOG00000039955 ENSRNOT00000061389 3 1 1 80 1 20155932 20155951 TGGTCAGTTGATCAGGTCTG 60 20155249 20155892 GACTTCTTCCTCTTGAAACCTG 59 NA Rattus norvegicus 81 Dok6 ENSRNOG00000038190 ENSRNOT00000058139 1 1 1 80 18 86614337 86685171 CTTGTGAGTCAGAGCTGGA 59 86614275 86614294 TGATGTCATTCAGCCTTGTC 58 NA Rattus norvegicus 81 Nptx2 ENSRNOG00000001006 ENSRNOT00000001331 3 1 1 100 12 12023144 12023162 TGCTCCACAATGAGACCTC 59 12017931 12023080 GAATGCACTGTTGCCTCTC 59 NA Rattus norvegicus 81 Rn60_X_0699.1 ENSRNOG00000051093 ENSRNOT00000076854 2 1 1 60 X 69558323 69558341 TGGATGTGAACATCACCAG 58 69558362 69558383 ATGATGTCTTCATTACCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph10b ENSRNOG00000001036 ENSRNOT00000034483 2 1 1 80 12 12694692 12694710 GTCAGACATCTCCCAAAGG 58 12693748 12694649 AACTTTCGTAGGGTTTCAGG 58 NA Rattus norvegicus 81 LOC100910419 ENSRNOG00000038741 ENSRNOT00000059172 1 1 1 80 19 41540814 41540836 GGAGAAGTATAAAGCTGTTGTCC 59 41540409 41540774 GCCATGAAATATGTCCCGC 60 NA Rattus norvegicus 81 LOC100360220 ENSRNOG00000046567 ENSRNOT00000060396 1 1 1 80 15 29976382 29976571 GATTTGCTGGGTGAGAGGA 59 29976320 29976340 CTCAGAGAAGAATTGGTTCCC 58 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049,ENSRNOT00000046229 2 2 3 80 9 81628659 81628677 TACCTCATCATCGACACCC 59 81628720 81629740 TTCAATAGAAGCCTGCACAG 58 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357,ENSRNOT00000080666 2 3 3 80 10 46129356 46129374 AAGCAATCCTGACTTCCTG 57 46129418 46129841 TCAATTACGGACTTGGACC 57 NA Rattus norvegicus 81 Fa2h ENSRNOG00000018950 ENSRNOT00000025625 1 1 1 80 19 43555736 43556305 TCCAAGACTGTCTGGTATAGTG 59 43555677 43555695 GAGGGTTCGGTAGTAGGAC 59 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639,ENSRNOT00000022060 1 2 2 80 1 151439677 151630856 TACTTCTGGGCAGTGATGG 59 151630900 151630918 TTGTAATTCCACCGACAGC 58 NA Rattus norvegicus 81 Cmtm1 ENSRNOG00000057711 ENSRNOT00000080433 1 1 1 80 19 864822 868662 CCTTGAGGATGTGCATTACTG 59 864762 864782 TCATGATGGCTACAAACAGGT 60 NA Rattus norvegicus 81 AABR07017748.1 ENSRNOG00000046957 ENSRNOT00000072977 1 1 1 60 15 30612436 30612552 GGGATAAACTTTCTCCTGAGAG 58 30612570 30612591 CATGAACATCAGGTTGAGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07017748.1 ENSRNOG00000046957 ENSRNOT00000072977 3 1 1 62 15 30612436 30612552 GGGATAAACTTTCTCCTGAGAG 58 30612572 30612593 GACATGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mafk ENSRNOG00000001277 ENSRNOT00000001720 3 1 1 162 12 16926394 16927281 CATTGAAGGTCAAGAAGGAGG 59 16926252 16926270 TAGCCTCGGTTCTTGAGTG 59 NA Rattus norvegicus 81 Prame ENSRNOG00000011113 ENSRNOT00000049735 2 1 1 80 X 106085072 106085597 GGACTGTTCTTCTAGGAGTCC 59 106085012 106085030 AATTCAGGGCATGTTGTCC 58 NA Rattus norvegicus 81 AC133403.1 ENSRNOG00000046836 ENSRNOT00000002447 3 1 1 80 11 70059979 70059999 TGTAGCTGAACATCATAACGC 59 70060040 70062344 ACAGCATTGTCAAAGACGAC 59 NA Rattus norvegicus 81 Kat5 ENSRNOG00000061012 ENSRNOT00000088799 1 1 1 80 1 220968664 220968682 GTCCCAAACCATCTTGGAG 58 220968491 220968624 CTGATCTCATTGATGGTGATCTG 59 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700,ENSRNOT00000013605 3 2 2 80 3 119042277 119042297 CAAGTATGACGTGGAGAAGGA 60 119042339 119043228 AGTCCAACCTCACCTTTGG 60 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 3 2 2 80 15 27765418 27765623 GAGGATACGTAAAGCTGTGG 58 27765357 27765377 TGATGCAGTTTAGAGACTTGG 58 NA Rattus norvegicus 81 RGD1559962 ENSRNOG00000026462 ENSRNOT00000036049 2 1 1 60 1 20417586 20417604 AAGATGTCCTCGTATGCCT 58 20417544 20417564 GATGCTTATTCTTGTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb2 ENSRNOG00000001224 ENSRNOT00000001639 1 1 1 80 20 11785449 11787258 GAAAGCCTACTACAAACTCTCC 59 11785390 11785410 GAGTCATAGGTGACTTTCAGG 58 NA Rattus norvegicus 81 Myod1 ENSRNOG00000011306 ENSRNOT00000015109 2 1 1 82 1 102397366 102397839 GATGGCATGATGGATTACAGC 60 102397883 102397901 GACGCCTCACTGTAGTAGG 59 NA Rattus norvegicus 81 Tm6sf2 ENSRNOG00000042237 ENSRNOT00000027800 2 1 1 80 16 21097645 21098309 TCTCTATGCTGTCTTTGTGGT 59 21097585 21097606 ATCAAGTAGCCATCTTCTTGGA 59 NA Rattus norvegicus 81 Olr1632 ENSRNOG00000046582 ENSRNOT00000050189 1 1 1 60 15 27499522 27499542 ATTCTGGTATCATCATGCTGG 58 27499482 27499500 TGGAGAAGACAGGGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910467 ENSRNOG00000048508 ENSRNOT00000072814 3 1 1 60 15 35942973 35942993 TATTGATCTCTGCCATTCCAC 58 35943015 35943033 CTCTGCCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox8 ENSRNOG00000018841 ENSRNOT00000025494 3 1 1 65 10 14936590 14936608 TCCATAACGCAGAGCTCAG 60 14935512 14935530 GCTTCTCGCTTTCACTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mlkl ENSRNOG00000042353 ENSRNOT00000036972 3 1 1 80 19 43521836 43521859 GGAGAGTATTACAAATCTCCAGTC 59 43517763 43521797 AGTGAGCCTCACTATTCCA 58 NA Rattus norvegicus 81 Zcwpw1 ENSRNOG00000050128 ENSRNOT00000065866 2 1 1 80 12 21447431 21447452 TCTTACCAGTGCAGAATTTGAG 59 21445999 21447391 ATACAGGAAGTCTCCAAGCA 59 NA Rattus norvegicus 81 Gpr151 ENSRNOG00000027103 ENSRNOT00000043544 3 1 1 60 18 36892748 36892768 CAGAAAGCCTGTAGTTACCTC 58 36892708 36892727 AAGGGTCTCAATGTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm4 ENSRNOG00000004962 ENSRNOT00000006886 2 1 1 80 7 23976047 23976066 GTACCTCACAAGACATCCCT 59 23976107 23976678 CAGGAACACCTATCTGTTGAG 58 NA Rattus norvegicus 81 Olr669 ENSRNOG00000053394 ENSRNOT00000084989 3 1 1 60 3 77677130 77677148 TTGGATGCATGTGTCTCCT 59 77677088 77677106 TCTCGTAAACCATGTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562469 ENSRNOG00000029410 ENSRNOT00000046791 2 1 1 60 13 30800148 30800167 CATCAAGCACTCAAAGAGCA 59 30800107 30800127 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl20 ENSRNOG00000015992 ENSRNOT00000021730 3 1 1 92 9 88919645 88919663 AACGTGTATCATCATGCGA 57 88919716 88919868 CTTCAGGTGAAAGATGATAGCA 58 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 2 2 2 86 12 22105892 22105910 TAGCTCTTCTGCCTTTGGA 58 22105960 22106815 GTTAGCATCCGATTGGCTG 59 NA Rattus norvegicus 81 Gpc4 ENSRNOG00000002413 ENSRNOT00000003282 3 1 1 80 X 139359791 139359811 CGATTCAGACCTTATCATCCA 57 139356025 139359751 TTTGACATCAGTAACCAGTCG 58 NA Rattus norvegicus 81 Syde2 ENSRNOG00000026186 ENSRNOT00000036282 1 1 1 80 2 251887213 251889012 CAGATGTTGAGAAGGCAACC 59 251889054 251889073 TCATCTTGTTCACTTCGTGG 58 NA Rattus norvegicus 81 Syde2 ENSRNOG00000026186 ENSRNOT00000036282 2 1 1 80 2 251887215 251889013 GATGTTGAGAAGGCAACCC 59 251889056 251889075 GGTCATCTTGTTCACTTCGT 58 NA Rattus norvegicus 81 Tubal3 ENSRNOG00000028750 ENSRNOT00000036821 1 1 1 80 17 69982765 69982785 TCTTTCATGAGACAAGCACTG 59 69977012 69982723 GGACGCCATCTATAACGGT 59 NA Rattus norvegicus 81 Tex264 ENSRNOG00000013201 ENSRNOT00000018122 3 1 1 80 8 115364460 115376247 GGATGTCTACATCAAGGAGC 58 115364399 115364417 CACATGAAGTGGATCTGGT 57 NA Rattus norvegicus 81 Olr640 ENSRNOG00000059418 ENSRNOT00000086249 3 1 1 60 3 76918267 76918287 AACTTGCCTGCATAGATACCT 59 76918308 76918327 ATGGCACCACTATTAGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559682 ENSRNOG00000022492 ENSRNOT00000037377 2 1 1 60 15 81576951 81576969 CATTGTGGAAGCCATGGAG 59 81576909 81576927 GGTGATCTTCTTGCTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r103 ENSRNOG00000031836 ENSRNOT00000049487 3 1 1 60 4 167180376 167180399 AAGACTCCTTACTATATCCTGGAC 59 167180339 167180358 GCATGTAGCAAACCAGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC292543 ENSRNOG00000054438 ENSRNOT00000091279 1 1 1 80 1 64629527 64631264 CACTTTAAGGTTCCAGCCC 59 64631305 64631326 AGTAGTCATTTGCATCATCAGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 3 1 4 129 9 81577355 81577699 ATGAACTACGGGCTGACAC 60 81576529 81576547 CAAAGCTGTCACTTCCTGC 60 NA InUTR Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000077336 2 1 4 91 9 81576566 81577700 CATGAACTACGGCCATGAC 59 81576493 81576511 TATGTCGGACTTTCCGGTC 59 NA Rattus norvegicus 81 AABR07017768.7 ENSRNOG00000060582 ENSRNOT00000090761 3 1 1 60 15 30821093 30821111 CTGGTCACTCTCACAGAGC 60 30821132 30821153 AGTAAGTAGTCTGATAGGTGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase1 ENSRNOG00000053633 ENSRNOT00000086427 1 1 1 60 15 28075108 28075130 CTACTGTAACCAGATGATGAAGC 59 28075150 28075168 GTTCACTGGCTTGCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase1 ENSRNOG00000053633 ENSRNOT00000086427 3 1 1 62 15 28075059 28075077 TTAAGAGGCAGCACATGGA 59 28075103 28075121 TCTGGTTACAGTAGGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb15 ENSRNOG00000006365 ENSRNOT00000060494 3 1 1 80 4 51628911 51630094 TCTGGACGCATCCTATAAGAC 59 51630136 51630154 CCAGCTTTGATTGCCAGAG 59 NA Rattus norvegicus 81 Ephb4 ENSRNOG00000045952 ENSRNOT00000072208 3 1 1 80 12 22410440 22413754 CCTACATCAAGGTGGACAC 58 22410378 22410397 TGTTAACTTTCCCTGTTGCT 58 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790,ENSRNOT00000084017 3 2 2 96 1 57351362 57358590 GAAATCTTAAAGGTTGCCAGG 58 57358645 57358666 GGGTGTTACTACACTCTATCTC 57 NA Rattus norvegicus 81 Sftpb ENSRNOG00000010761 ENSRNOT00000014505 3 1 1 95 4 100167298 100167316 AAATTCTGGTGCCAAAGCC 59 100167375 100167810 CAGGTCATTAGCTCCTGCA 60 NA Rattus norvegicus 81 RGD1306739 ENSRNOG00000000634 ENSRNOT00000000785 3 1 1 80 20 21420706 21420724 GCTTCACCATTGATGACGT 59 21420765 21425650 CGTTTATCTCGTTCTGAATGCT 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459,ENSRNOT00000040759,ENSRNOT00000047737,ENSRNOT00000051371 2 4 4 80 16 6233876 6233897 TTAGTCTGATCATCCTTGGCTC 60 6206623 6233840 CTCTTTCCTTTGAGAATTCTCCAC 60 NA Rattus norvegicus 81 Rhbdl1 ENSRNOG00000019921 ENSRNOT00000026971 1 1 1 80 10 15203078 15203096 TGGTACTTCTACAGGCACC 59 15202941 15203034 CAGGAACACGATGATCTGG 58 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354,ENSRNOT00000090267 1 2 3 60 9 81563431 81563452 TAGAGACCAAGGAAGAAGTCTG 59 81563392 81563410 TCCAAGGATCTCACCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem72 ENSRNOG00000023340 ENSRNOT00000037397 2 1 1 80 4 148844839 148844858 AAGCTCCAAGTATTCTGGAC 57 148829186 148844796 CACTCCAATCAGTACTGCA 57 NA Rattus norvegicus 81 Psors1c2 ENSRNOG00000048579 ENSRNOT00000074958 1 1 1 138 20 3728160 3728763 CTATTTGCAGGAGGCATCTC 59 3728041 3728059 CATCAAACAGAGGAGGTGC 59 NA Rattus norvegicus 81 Neto1 ENSRNOG00000014006 ENSRNOT00000019384 2 1 1 80 18 83474648 83480524 GTGTCTACATCATAGAAGCTGC 59 83480564 83480583 CCCAAGATGGTTCGATTGAG 59 NA Rattus norvegicus 81 Swap70 ENSRNOG00000009910 ENSRNOT00000013276 1 1 1 80 1 174897152 174905067 TTATTGTGCCAGAAGAGATCG 58 174905109 174905127 CAAATTGCTCTTGTTGCCA 57 NA Rattus norvegicus 81 Zfp111 ENSRNOG00000024376 ENSRNOT00000051473 3 1 1 97 1 81042336 81043333 AGTTACAGGAGGCAGTGAC 59 81042257 81042275 ATCGTGGTACAGCTTCCTC 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748,ENSRNOT00000020556,ENSRNOT00000079515 1 3 3 80 3 154933385 154935077 TTGCCAAATGGAAATGGGTG 60 154935119 154935138 CCACTTGCTGAACTAATGCC 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000068094 3 1 10 80 15 32764056 32852780 TGACTGTGGAACCAAATGTC 59 32852820 32852841 AGAGGGTGATGTTATCAGACTG 59 NA Rattus norvegicus 81 Tm9sf2 ENSRNOG00000012751 ENSRNOT00000017211 1 1 1 80 15 108571652 108574641 TCTATGTGCAGAGGATTACCA 58 108574680 108574701 GCGTATACGAGGAAATACACTG 59 NA Rattus norvegicus 81 Lars ENSRNOG00000018304 ENSRNOT00000025284 3 1 1 80 18 36538247 36538268 ATCTATGTGGCAAAGAACTACC 58 36536272 36538208 TCCATTGTTAGCCTCAAAGTG 59 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 3 3 3 81 6 127612422 127612440 CAAGATGCAGCATCTGGAG 59 127611486 127612377 AATGGCTGACCTTGTTTGC 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000082523 2 1 6 60 20 3428349 3428367 CAAGTTCTAGTCCCTCCGA 58 3428307 3428329 GTTCCAGGTATCCATATAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxa9 ENSRNOG00000048146 ENSRNOT00000071668 3 1 1 103 4 82278990 82280157 CCATCGATCCCAATAACCC 58 82278905 82278923 TTCTTTCTCCAGTTCCAGC 57 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692,ENSRNOT00000082289,ENSRNOT00000086856 3 3 4 80 1 102826915 102826933 TCTGCCCTTCAACATTCCA 59 102825111 102826875 CTAGAAACACTGTCCTTAACAGC 60 NA Rattus norvegicus 81 Olr665 ENSRNOG00000051939 ENSRNOT00000090062 3 1 1 60 3 77605768 77605788 TACTTCTTTCTGGCATTCCTG 58 77605728 77605746 TTGGTGTGATGACAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam227b ENSRNOG00000037124 ENSRNOT00000055995 1 1 1 80 3 118407270 118407288 TATACAAACCTGGACCGCT 58 118406820 118407228 CTCCATTTGATCTGAAAGCAC 58 NA Rattus norvegicus 81 Olr1507 ENSRNOG00000019898 ENSRNOT00000026924 2 1 1 60 10 60864665 60864685 GTCCATCATTTGGCTACTCAG 59 60864625 60864643 ACTACCGCATAGACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036649.2 ENSRNOG00000058250 ENSRNOT00000075791 3 1 1 105 12 52649787 52652110 AGTCCAGGATATCATTTGAGGA 59 52649703 52649723 TTCTCCAACATCACATCTCTG 58 NA Rattus norvegicus 81 Ankrd26 ENSRNOG00000006717 ENSRNOT00000073562 3 1 1 80 4 150578282 150578542 AATAACAAGGACAGCAAGCA 58 150578221 150578240 GTCCTCAGAGGACATTTCAG 58 NA Rattus norvegicus 81 Clybl ENSRNOG00000014075 ENSRNOT00000018918 2 1 1 80 15 108813383 108813401 ATTGGACCTCAAGTGGGTC 59 108813445 108814755 GCTTGTTGCACCTATGCTG 60 NA Rattus norvegicus 81 Lrch4 ENSRNOG00000001402 ENSRNOT00000001899 2 1 1 80 12 22131057 22131075 TTATGATGGTGGCCTGGAC 60 22130762 22131015 TCATCTGTGGACTCATTTCCT 59 NA Rattus norvegicus 81 RGD1565617 ENSRNOG00000038254 ENSRNOT00000048879 1 1 1 60 19 3326306 3326324 CCAACAGAAACCAGGACAG 58 3326347 3326366 AGACTCTAGGTTGGATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam133b ENSRNOG00000009163 ENSRNOT00000012253 3 1 1 100 4 27744149 27744167 CAATAGCAATGGCTCGGTC 59 27740920 27744085 CTCCTTCACTTCCTCCCAG 59 NA Rattus norvegicus 81 Lrch1 ENSRNOG00000009412 ENSRNOT00000047192 3 1 1 80 15 56808073 56808092 TACGATTCGGAGGAAGATGG 59 56807425 56808031 AACCTCATCTCGATGCTCTC 59 NA Rattus norvegicus 81 AABR07006049.2 ENSRNOG00000048049 ENSRNOT00000054858 1 1 1 80 1 215302633 215303125 CACAGAATACACAGGCTCG 58 215302571 215302590 CATCAAACCTCCGATCAGTC 59 NA Rattus norvegicus 81 Mllt3 ENSRNOG00000011280 ENSRNOT00000015094 3 1 1 80 5 106109666 106109685 ATGAGTTGGTAGAACTCCAC 57 106103719 106109626 CCTCTATAAGGTTCACGATCTG 58 NA Rattus norvegicus 81 Lag3 ENSRNOG00000021334 ENSRNOT00000028965 2 1 1 80 4 157425897 157426182 GAGAAGACAGTTGCTACGGA 60 157425836 157425857 TCCTCTATCTTACTCTGAACCG 59 NA Rattus norvegicus 81 LOC100910581 ENSRNOG00000024505 ENSRNOT00000035372 1 1 1 99 12 21727858 21727876 GAGAAGTTGGCGATGTTGC 60 21727686 21727704 GAGAATCTGGGTTGCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Pole2 ENSRNOG00000004242 ENSRNOT00000005835 3 1 1 80 6 91517255 91517274 GTCTGTCACTGAATTGGAGC 59 91514200 91517213 ATGTTTGATGACAAGGGCTG 59 NA Rattus norvegicus 81 Pm20d1 ENSRNOG00000039745 ENSRNOT00000009838 3 1 1 80 13 48582192 48582459 TGTAAGCAGGGTAATGGAGAG 59 48582500 48582519 CCTGCATTGAACATGGTGAG 60 NA Rattus norvegicus 81 Bcl10 ENSRNOG00000042389 ENSRNOT00000019911 3 1 1 130 2 251805487 251811343 GTGAAGAAGGACGCTTTAGAG 59 251811432 251811453 GTTCGGCAAGAAATTTCTTCTG 59 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004,ENSRNOT00000063875 1 2 2 80 20 30820359 30820379 AGAGATGGACAGCTATGAGTG 59 30819906 30820319 TTAGTGAACTGGATTCCTCCT 58 NA Rattus norvegicus 81 RGD1561157 ENSRNOG00000042258 ENSRNOT00000066310 2 1 1 129 10 13084669 13084687 AAATTATGGCACCAGCTGG 59 13084869 13084887 TTTCCATCTGCACTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927 3 1 2 87 1 153734299 153742020 TGCATGAAAGTAGCACTCAG 58 153734231 153734249 GACTCACCTGCATGAACAC 59 NA Rattus norvegicus 81 Tprkb ENSRNOG00000015818 ENSRNOT00000021211 1 1 1 100 4 117780666 117783437 CCAATGTGATTGTCGATCCA 58 117783497 117783518 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Chn3 ENSRNOG00000038211 ENSRNOT00000058177 2 1 1 80 18 85990193 85990212 CACTGGTGTGAATATTGTGC 58 85989958 85990151 TCCTTCAGATTTCAGACCTG 57 NA Rattus norvegicus 81 Bik ENSRNOG00000010359 ENSRNOT00000013977 3 1 1 91 7 124409065 124409453 TGCTATGCACAGACTTGCT 60 124409508 124409526 TTTCCCTGAGGTTGGTGAG 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 2 3 3 80 4 183408874 183408893 AGACTCTGTCTGGAAACAGG 59 183406539 183408831 GAGCATCAGAATTGTGGCG 60 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000074904 3 1 2 93 9 9931792 9932155 AGATACAGGAAGAGGCCCA 60 9931499 9931517 ACATCCTCGTCCATCTGTC 59 NA Rattus norvegicus 81 Mst1r ENSRNOG00000032618 ENSRNOT00000066104 2 1 1 80 8 116696802 116697081 CTAGGAACTGCATGCTGGA 60 116697124 116697143 ATTCCTTGTCTAGGATGCCA 59 NA Rattus norvegicus 81 Chst7 ENSRNOG00000004258 ENSRNOT00000005630 1 1 1 85 X 2655607 2655625 GAGACACCACTGGAAACCA 60 2623713 2655559 ACCACTGACCTAGATATGCC 59 NA InUTR Rattus norvegicus 81 Tead4 ENSRNOG00000005608 ENSRNOT00000050834 1 1 1 80 4 161544410 161546238 AAGTTGAGACAGAGTTTGCTC 59 161544350 161544369 TCATGTACTCACAGAGTGGG 59 NA Rattus norvegicus 81 Ppil3 ENSRNOG00000013636 ENSRNOT00000018284 1 1 1 80 9 65318605 65318625 GATCTCAGTTCTTCATCACCT 57 65315746 65318565 GACCATCTATTACCTTTCCGA 57 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 1 2 2 82 8 71727708 71728098 ACAAGCGGATCAAGAAACG 59 71727644 71727662 CTGTTCCAGTCCTCTGGTC 59 NA Rattus norvegicus 81 Zfp182 ENSRNOG00000047132 ENSRNOT00000073016 2 1 1 84 X 985274 985293 CTCATTATCAAGCTGGAGGT 57 985340 998023 TAACTTGGCAGACTTCTGG 57 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837,ENSRNOT00000071076 2 2 2 80 11 84534769 84534788 GAGCTTCTCAACTAGCATCG 59 84534829 84535733 TTCGAAATAACACCTGCAGAC 59 NA Rattus norvegicus 81 Mmp14 ENSRNOG00000010947 ENSRNOT00000075610 2 1 1 80 15 33082455 33082475 AACATCAAAGTCTGGGAAGGA 59 33082511 33082815 GTAGAAGTATGTGAAGACTTCATCG 60 NA Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000050973 ENSRNOT00000073780 3 1 1 60 1 259080734 259080752 AAGGCTCGAGCAATTAGGT 59 259080692 259080711 GAATAACCCGATGTCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 A4galt ENSRNOG00000009736 ENSRNOT00000012914 1 1 1 121 7 124087449 124089371 GACAAGTCAATCCTTATGGGC 59 124087348 124087366 ATGAAGAGGGTGAAGACCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017733.1 ENSRNOG00000049583 ENSRNOT00000071781 2 1 1 85 15 30413527 30414816 CTCTTCTTCACAGGTGTGAG 58 30414864 30414882 ATAAAGGCACTGTCTCCCT 58 NA Rattus norvegicus 81 Dicer1 ENSRNOG00000010711 ENSRNOT00000014405 2 1 1 80 6 128408650 128408768 AAACCCATACCTCAGATCCC 59 128408589 128408608 AGACTTCTTCAGCTCGATGG 60 NA Rattus norvegicus 81 Slc15a3 ENSRNOG00000021644 ENSRNOT00000029443 2 1 1 80 1 226903532 226903550 ATGCTGAACCTTGCATTCC 59 226903594 226907913 AGCACCTTCAGAGTTCCTG 59 NA Rattus norvegicus 81 Zbtb7c ENSRNOG00000047924 ENSRNOT00000072519 3 1 1 223 18 72452904 72452922 ATCTCAACTTCCTGAGTGC 57 72453109 72459927 CTTCAGTTTGTCCTGCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 3 2 2 80 6 125661175 125661194 TATGGTTCTTTCATCTGCCG 58 125657804 125661133 GCACTCATCCATATCACTGC 59 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394,ENSRNOT00000000683 1 2 2 80 20 30795444 30799156 ACAACCAATGAGCAGAAGG 58 30799199 30799218 AGTCTCAGCTGAGTACTTGG 59 NA Rattus norvegicus 81 Camta1 ENSRNOG00000042627 ENSRNOT00000067481 3 1 1 82 5 168985533 168991200 CTATAGAAGATGATCATGGGAACAG 59 168985475 168985493 TTTCGGCAGACATTCAAGC 59 NA Rattus norvegicus 81 Acsf3 ENSRNOG00000015077 ENSRNOT00000020313 3 1 1 80 19 55630225 55630244 TGGAGGCTATAAAGTCAGCG 60 55630285 55630724 CCAATTACAGCGACATCTGTG 60 NA Rattus norvegicus 81 Lrg1 ENSRNOG00000049918 ENSRNOT00000074993 2 1 1 61 9 10952413 10952431 ACAAACATAGAGGAGCAGC 58 10952456 10953417 CAGGAGGAACAGGGTTCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Rab8b ENSRNOG00000018009 ENSRNOT00000024286 3 1 1 83 8 72646785 72646806 ATGATCCTGGGTAACAAATGTG 59 72645242 72646746 CCCATAGTCAATTGCTAACTTCTC 60 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754,ENSRNOT00000042372 1 2 2 80 10 104726550 104726571 CAACTATGGTGGACATCAACAG 59 104726378 104726511 CAGCGATTTCTACCAATCTGG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098,ENSRNOT00000082974 1 2 2 80 10 85965821 85968852 CTCGAGAAAGCCAAGACCA 60 85965759 85965777 CACCTCATCTCCTGGAGAC 59 NA Rattus norvegicus 81 Srms ENSRNOG00000013003 ENSRNOT00000017668 2 1 1 81 3 176710836 176710855 AAAGTCAGATGTTTGGTCCT 57 176710521 176710793 GTTGGTCATTCCCTCATAGG 58 NA Rattus norvegicus 81 Rft1 ENSRNOG00000021805 ENSRNOT00000035542 2 1 1 80 16 6733326 6733344 AATTGGAACGAGGCTAGGT 59 6733388 6735422 GTATCGCTCACCTTCTGTC 58 NA Rattus norvegicus 81 Rn60_10_0291.1 ENSRNOG00000042335 ENSRNOT00000068358 1 1 1 60 10 29246129 29246147 AAGATGAGATTGACCGCCA 59 29246170 29246189 TGCCGTTTGATTTGTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0291.1 ENSRNOG00000042335 ENSRNOT00000068358 2 1 1 60 10 29246121 29246142 GCACCATGAAGATGAGATTGAC 60 29246161 29246181 GATTTGTTTCTGCAGATGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912017 ENSRNOG00000045677 ENSRNOT00000050551 3 1 1 80 1 213680046 213680810 GCTGAAGGGTTCTCAAAGC 59 213680854 213680872 TGCTGGGTAATCATTGCCT 59 NA Rattus norvegicus 81 Mrgprd ENSRNOG00000013448 ENSRNOT00000017958 3 1 1 60 1 218488551 218488571 GGTTCTTACTCTACTGGGTGG 60 218488593 218488611 GATGAGCAGACGTACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shf ENSRNOG00000028685 ENSRNOT00000064592 3 1 1 80 3 114295672 114295691 TCCAGAAGAGTATGACCAGC 59 114294198 114295632 TTGATGACCTTTATGTCAACCG 59 NA Rattus norvegicus 81 Cables1 ENSRNOG00000012795 ENSRNOT00000017187 2 1 1 84 18 3400431 3415772 TTCGTACATGACCACAGTG 58 3415819 3415838 AGGAAACTTCTCCTTGAAGG 57 NA Rattus norvegicus 81 LOC100359777 ENSRNOG00000043422 ENSRNOT00000064181 1 1 1 80 10 31615793 31617802 GAATAACCACACTGAAGTGGTC 59 31617839 31617861 GACACAGAGATTCCAATACAGAG 59 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 3 2 2 81 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298256 167298275 GCAGTAGCTGTGAACTTCTG 59 NA Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 2 2 2 80 7 38919685 38924097 ACACCAATGAAGACTTTCCA 57 38924138 38924158 CATCAAGTTCATGGTCATCAC 57 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 1 2 2 80 15 4082977 4082995 AGTGGAACTTGGCATTGAC 58 4083039 4083813 ATTGCCGTCCTGTTAAAGG 58 NA Rattus norvegicus 81 Blmh ENSRNOG00000003563 ENSRNOT00000076686 3 1 1 83 10 63239947 63240267 CAACGCAGGACTAAATTCGG 60 63239883 63239901 ACATTCTGGGCAAGTACGA 59 NA Rattus norvegicus 81 Hoxd12 ENSRNOG00000001587 ENSRNOT00000068636 1 1 1 114 3 61597961 61597979 AACTTGAACATGGCAGTGC 59 61598215 61598233 ATGGTTTCCTCTTCTTGCG 58 NA DesignNoJunction Rattus norvegicus 81 Rpl34-ps1 ENSRNOG00000038045 ENSRNOT00000057895 1 1 1 60 17 78876197 78876216 AAACTAGGCTGTCTCGAACC 60 78876237 78876257 CTGACCTTCTTGGTGTAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000012296 1 1 2 93 6 127329919 127329937 CTTGGATCTGCATTGGGAG 58 127329994 127331861 CAGTCTTGACTCCAATGGG 58 NA Rattus norvegicus 81 Tfec ENSRNOG00000061595 ENSRNOT00000086810 2 1 1 81 4 44077828 44077848 TTTCTCCAGTTAACACTGGTC 58 44076641 44077787 GTGTCAGTTTCTGCAATTTCC 58 NA Rattus norvegicus 81 Mrgprb4 ENSRNOG00000033021 ENSRNOT00000045792 2 1 1 60 1 103426271 103426289 ATAGGAATGCCTTCTCCGT 58 103426229 103426249 CAGAGGTACAAGAAATCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oma1 ENSRNOG00000007214 ENSRNOT00000009516 1 1 1 80 5 122855322 122858338 ACCTGGAATATGAAGTGTGGA 59 122858380 122858398 TCTTGACAGTCAGGTACCG 59 NA Rattus norvegicus 81 Fabp3 ENSRNOG00000012879 ENSRNOT00000017325 3 1 1 88 5 148534102 148534120 CAAACTGGTCCATGTGCAG 60 148534172 148535323 GGGTGAGAGTCAGGATGAG 59 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 3 2 2 80 3 56063602 56067502 TCCACACCCAGAATATGGA 58 56067545 56067564 TCTGTGATCGTAGTCTGTCC 59 NA Rattus norvegicus 81 Rhoa ENSRNOG00000050519 ENSRNOT00000071664 1 1 1 80 8 117106668 117106686 CAGAGGTTTATGTGCCCAC 59 117106729 117109587 ATAAAGCCAACTCTACCTGC 58 NA Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000022499 3 1 2 81 1 107295024 107295042 CAATTTCCTCTCCTGGTGC 59 107295087 107305646 CTGCTTATGCAGAACCAGG 59 NA Rattus norvegicus 81 Olr1625 ENSRNOG00000012491 ENSRNOT00000016643 3 1 1 60 15 26803926 26803944 TCTTTCCAAGGCTCTGTCC 59 26803884 26803903 TCCAAAGAACAGAGTGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo3a ENSRNOG00000018478 ENSRNOT00000025053 2 1 1 80 17 89018333 89018352 ACTGCAGAAACAACTCATGG 59 89018395 89031184 TGAATTCGTTCATGCCTGG 59 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000064965,ENSRNOT00000076099 1 2 3 85 9 94432050 94453581 TTGAACAGGTTTCTCCACAC 58 94453628 94453647 GGCCCAAAGTTTAGTGTCTG 59 NA InUTR Rattus norvegicus 81 LOC100365136 ENSRNOG00000049881 ENSRNOT00000048256 1 1 1 80 1 38486273 38486293 GAAGTGTAAATTCGAGAGGCA 59 38484845 38486231 ACATCCAGACTGTAGTCCC 58 NA Rattus norvegicus 81 Mecr ENSRNOG00000028047 ENSRNOT00000034057 1 1 1 80 5 150013168 150013972 TGATCCAAGGGAACTATGGC 60 150014015 150014033 CCACTGCTATCACCTGTCC 60 NA Rattus norvegicus 81 Zfp511 ENSRNOG00000018272 ENSRNOT00000046314 1 1 1 80 1 212360335 212360439 GGCAAGACATGTACCAGTG 59 212360483 212360501 TCACCATGTGATCCTTCCG 60 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000087084 3 2 3 102 10 105094838 105094856 CCAAACTCTGGACTGTCCA 59 105094929 105094949 AGACTGGCCTTAAACTCCG 59 NA InUTR Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 2 2 2 80 1 260847413 260850262 ACATCACTCTTCAGGTCTCC 59 260847352 260847370 GCTCAACTGCAATGTGGTC 60 NA Rattus norvegicus 81 Slc39a12 ENSRNOG00000025639 ENSRNOT00000044313 1 1 1 80 17 81510963 81512985 ATGAAATGGGAGACTTTGCTG 59 81513023 81513045 GGGCACTTAGGAAATTCATTAGG 60 NA Rattus norvegicus 81 Svip ENSRNOG00000037137 ENSRNOT00000056024 1 1 1 99 1 107371452 107371470 GATATCCAGTCGGTGGAGG 59 107368950 107371390 ACACTGTCCATCTAAGTCCC 59 NA Rattus norvegicus 81 Oxld1 ENSRNOG00000047517 ENSRNOT00000075206 2 1 1 82 10 109629186 109629808 CTTTCTTCAGGGCAAGCAC 60 109629122 109629142 GTCTGTGAAGAACACTGTGTC 59 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537,ENSRNOT00000085877 3 2 2 82 20 31461744 31461762 CTCTAGAGGGCCTAAAGGG 58 31458345 31461698 GTAAGCCATCTTCTCCCAG 57 NA Rattus norvegicus 81 LOC100910637 ENSRNOG00000049190 ENSRNOT00000073447 3 1 1 60 1 169660899 169660918 CTTGCCTCATCATTGTTGCT 59 169660940 169660959 ACAACAGGGTTCATAGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 1 2 2 80 4 55821822 55832683 TGTTGCCAAGGTAATGCAG 59 55832726 55832745 AGGTGGATGGTCTTGTAGTC 59 NA Rattus norvegicus 81 Tex101 ENSRNOG00000020057 ENSRNOT00000027202 3 1 1 80 1 81531776 81532225 GTTGATTAAAGCAGAAGGAACC 58 81531717 81531735 AATGTCATCGTCTCTGCTC 57 NA Rattus norvegicus 81 Uqcrc2 ENSRNOG00000036742 ENSRNOT00000021514 3 1 1 80 1 190567164 190569285 CCACAGACTCGTATCATTGAG 58 190569325 190569345 ATAGTCAGGACAGTACAAGGG 59 NA Rattus norvegicus 81 Olr678 ENSRNOG00000056750 ENSRNOT00000080803 2 1 1 60 3 77893372 77893396 CTTCTATGAAATGAAGACCATCTCC 60 77893336 77893355 GTGTATGGCAAACAGTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr1 ENSRNOG00000008223 ENSRNOT00000010850 3 1 1 115 5 49311091 49311109 ATTTCAAGCAAGGAGCACC 59 49327750 49327768 CAAGGCCATCTAGGATCGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 1 2 2 105 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362993 81363011 GAGTGAGACACAGAGGCTG 60 NA Rattus norvegicus 81 LOC100910670 ENSRNOG00000047359 ENSRNOT00000073194 1 1 1 60 1 169669834 169669854 TGCTTTGCTCAGATGTATACC 58 169669874 169669894 AGACAAAGATACCTGACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 1 2 2 80 6 128666628 128668305 AGAGCAAACTTCAGAGCCT 59 128666566 128666584 GGTCTAGGAGCTTCCTGTG 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 2 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671840 CCCTTCATACTTTGGTATTCCTG 59 NA Rattus norvegicus 81 Rn60_13_0880.3 ENSRNOG00000051312 ENSRNOT00000075853 1 1 1 60 13 83037171 83037189 GCACCATCGTTGTCTTCAC 60 83037129 83037148 CACTAGCTTAGCCAGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 1 2 2 104 15 29208649 29208774 TTCTACTCGGAAGGACTCG 58 29208842 29208860 TTGTGGCTGAATAAGTGCA 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867,ENSRNOT00000058479,ENSRNOT00000080949,ENSRNOT00000078131,ENSRNOT00000080562 1 5 5 80 11 81435004 81440265 ATATTACTCCAGGTAAGGGTCC 59 81434945 81434963 AGCTATCCATCGGTATGGG 58 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 3 1 1 60 7 75288030 75288050 CCATCCAGTTCTTAGTTTCCA 58 75286868 75288009 GTAGCACCTTGATGATTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913,ENSRNOT00000055077 2 2 2 82 X 2089986 2104899 CTAATTGATGAGATGGTTGGCA 59 2089925 2089943 ACCCTCTGAGCATCTTCAG 59 NA Rattus norvegicus 81 Adamtsl4 ENSRNOG00000049385 ENSRNOT00000074156 1 1 1 80 2 197808717 197808735 AGATCCTGTGGATTCCTGC 59 197808478 197808675 CTCGAAGTGCAAGGTAATTGG 60 NA Rattus norvegicus 81 Ucn3 ENSRNOG00000017759 ENSRNOT00000023887 2 1 1 100 17 69960167 69965615 AAAGTCCTCTTACAGGGAGC 59 69965678 69965696 TAGAACTTGTGGGAGAGGC 59 NA InUTR Rattus norvegicus 81 Sgta ENSRNOG00000019891 ENSRNOT00000026960 2 1 1 84 7 11530180 11530198 TGCCATCATCCAGTTCCTG 60 11530246 11531492 CTGGATGGCAACCTCTAGG 60 NA Rattus norvegicus 81 Cd177 ENSRNOG00000022669 ENSRNOT00000051619 2 1 1 80 1 82965757 82965776 TGACTTTGTCACCTGTCCTC 60 82965162 82965714 GTGGAAGACAGTCCACCTC 60 NA Rattus norvegicus 81 Cdt1 ENSRNOG00000013970 ENSRNOT00000018923 2 1 1 88 19 55382668 55383067 AGAACAACCATGTGTCGAC 58 55383119 55383137 TGTATGGTAGGACAAGGCC 59 NA Rattus norvegicus 81 Atp6v0e2 ENSRNOG00000008218 ENSRNOT00000010853 1 1 1 80 4 78169684 78170248 TTACCTCTTCTGGCTCATCG 59 78170287 78170309 TACCAGATGGTCTCATTCTTCAG 60 NA Rattus norvegicus 81 Atp6v0e2 ENSRNOG00000008218 ENSRNOT00000010853 3 1 1 80 4 78169678 78170241 CTGCTGTTACCTCTTCTGG 58 78170284 78170303 ATGGTCTCATTCTTCAGCTG 58 NA Rattus norvegicus 81 RGD1564664 ENSRNOG00000055564 ENSRNOT00000088555 1 1 1 92 3 82855481 82855499 AGAAGTCGTTCCTGCAGAG 59 82855407 82855425 TCCTCAGTTTGCAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 1 2 2 80 2 188562604 188564538 AATCTTCCCTGAGATTCTCCT 58 188564580 188564598 CAAGTGGTGACACAGACTC 58 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 3 2 2 80 2 188562603 188564539 AAATCTTCCCTGAGATTCTCCTC 60 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192,ENSRNOT00000065720 2 2 2 80 9 96970596 96973829 GAGCAGCAAGAATAAGTCCC 59 96973871 96973890 GAGTTCCCTCTCATGTTACG 58 NA Rattus norvegicus 81 Olr868 ENSRNOG00000047897 ENSRNOT00000044946 1 1 1 60 5 137901115 137901134 ATCTGTGGTTTCCTTTCCTC 58 137901074 137901094 CACAATAGGGTAGACTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ajuba ENSRNOG00000012791 ENSRNOT00000017753 1 1 1 80 15 33211106 33212431 CTTGATTCTAGAGAAGATCCTCCA 59 33211049 33211069 CACTTGTTACAAACGATGCAC 59 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 3 2 2 80 2 197989958 197989978 AGAACTCCAAGGGTTCATACG 60 197989634 197989920 CTACTTAATCCTCTGTCAAAGCG 59 NA Rattus norvegicus 81 Tmem132e ENSRNOG00000007455 ENSRNOT00000055999 1 1 1 80 10 69791359 69792056 ACCCTTTAAGGTGGTATCCC 59 69792098 69792117 ATACTGACCTTCTCCTCCGT 60 NA Rattus norvegicus 81 Tmem132e ENSRNOG00000007455 ENSRNOT00000055999 2 1 1 80 10 69791359 69792056 ACCCTTTAAGGTGGTATCCC 59 69792099 69792117 ATACTGACCTTCTCCTCCG 58 NA Rattus norvegicus 81 Suox ENSRNOG00000005987 ENSRNOT00000008018 3 1 1 102 7 3100381 3100402 TGATGATAACTCAAGGACTCGG 60 3100121 3100318 CTCCTGAGAAGCCCTACAC 59 NA Rattus norvegicus 81 Bcl7b ENSRNOG00000032705 ENSRNOT00000041798 2 1 1 82 12 24554767 24556780 CGGAAATGGGAGAAGAAATGG 59 24554705 24554724 TCCTTGCTATCTGTCACAGG 59 NA Rattus norvegicus 81 Trpc4ap ENSRNOG00000019152 ENSRNOT00000026091 3 1 1 80 3 151166256 151166276 TTATGTACAAACTGGAGGTGC 58 151160942 151166214 CAATCATCCTGTGGACCTG 58 NA Rattus norvegicus 81 Sntb2 ENSRNOG00000020344 ENSRNOT00000027561 2 1 1 80 19 39207602 39209021 GAGGGAGAACTGACTATGGA 58 39209061 39209082 GACTTTGGCAGATAAGAATGTG 58 NA Rattus norvegicus 81 Chic2 ENSRNOG00000002267 ENSRNOT00000003085 2 1 1 86 14 35683816 35697104 GTCACCGTATTTGGACTGAG 58 35697284 35697303 GGCTTTAAATTCTTCAGGCG 58 NA Rattus norvegicus 81 Haus4 ENSRNOG00000039284 ENSRNOT00000016401 1 1 1 80 15 33182792 33183101 CCTCAAGATGAGGATGGAGG 59 33182731 33182751 CTAATGAGGCGATGTACTTCC 58 NA Rattus norvegicus 81 AABR07035818.1 ENSRNOG00000059116 ENSRNOT00000044841 1 1 1 100 12 23467895 23469013 TCTGGTCTTTCTGGTGCTG 60 23469254 23469272 ATTTGTGCAGATGATCGGC 59 NA Rattus norvegicus 81 AABR07035818.1 ENSRNOG00000059116 ENSRNOT00000044841 2 1 1 101 12 23467894 23469012 GTCTGGTCTTTCTGGTGCT 60 23469254 23469272 ATTTGTGCAGATGATCGGC 59 NA Rattus norvegicus 81 Trim40 ENSRNOG00000000783 ENSRNOT00000029070 2 1 1 84 20 2170005 2176712 ACTACAAGGAAAGACTCAATCG 58 2176756 2176775 TTCTCTTCCTGAGCCTTCAG 59 NA Rattus norvegicus 81 Cep135 ENSRNOG00000002153 ENSRNOT00000032156 1 1 1 80 14 34060579 34061412 CTCTCAGAAAGCAAACTAACTACC 60 34060522 34060543 ATAATCTGTCTGCAACTGTGTC 59 NA Rattus norvegicus 81 Cep135 ENSRNOG00000002153 ENSRNOT00000032156 3 1 1 80 14 34057045 34060492 GAAGTACGAACGAGAGCGA 60 34056983 34057002 GATCTCAGAGTGGAGCTCAG 59 NA Rattus norvegicus 81 Irs4 ENSRNOG00000046790 ENSRNOT00000076904 1 1 1 80 X 113014395 113014414 GACGACAACATTTACGTGAG 57 113004709 113014353 TGTAGTCACTCTCATTTCGG 57 NA Rattus norvegicus 81 Cacna1i ENSRNOG00000060407 ENSRNOT00000084352 1 1 1 80 7 121578467 121578489 GGAGATCATGTACTATGTGATGG 58 121578528 121581081 AAGGAGCCCACTATGATGAG 59 NA Rattus norvegicus 81 Cdh24 ENSRNOG00000013503 ENSRNOT00000036150 1 1 1 80 15 33284599 33284617 CAGCACCACAGTAACAGTC 59 33284401 33284559 ACTGAGAACTGGTATAGACTCTG 59 NA Rattus norvegicus 81 Mbd3 ENSRNOG00000028956 ENSRNOT00000049170 2 1 1 157 7 12184877 12185493 GACATCAGGAAGCAGGAGG 60 12185613 12185632 TCCTCCTCTTCTTCCTCCTC 60 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346,ENSRNOT00000002557 3 2 2 81 11 87432184 87433006 CGTTATCTCTGATGTGGACCT 59 87432123 87432141 GTTTAAGGTGAGGGCAGTG 59 NA Rattus norvegicus 81 Pagr1 ENSRNOG00000020217 ENSRNOT00000027392 3 1 1 86 1 198449235 198449980 AAGACGTACACCAGGAAGC 60 198449167 198449188 TTCTTATGTCGCTTCATGTCTG 59 NA Rattus norvegicus 81 Tmem200b ENSRNOG00000032018 ENSRNOT00000047917 3 1 1 61 5 150080736 150080754 ATGTGATCATCACGGTGCA 60 150080779 150080797 CAGGTCCAGAGACTTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 1 2 2 80 6 132104700 132105485 TAAATGACAGTCTCTGCACCA 60 132105525 132105545 GTCCCGCAAGATACATTACTG 59 NA Rattus norvegicus 81 AABR07056633.1 ENSRNOG00000024494 ENSRNOT00000065354 1 1 1 80 7 33771558 33771578 CCAATCATCATAGCAGATCGG 59 33767596 33771519 CTTGGAGAACATCTTGTGTCTG 59 NA Rattus norvegicus 81 Zcchc12 ENSRNOG00000013162 ENSRNOT00000017567 1 1 1 148 X 122809549 122809982 CTAGCTGGTACCCTACTGAG 58 122810093 122810111 TTACCCATGCGTGAAAGGA 59 NA InUTR Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000074295 1 1 3 61 3 147478106 147479173 ATGGAGAACTTGAGCGGAG 60 147478063 147478082 GAGAAGACAGATACAGGCAC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Pygm ENSRNOG00000021090 ENSRNOT00000028636 3 1 1 81 1 221760828 221761100 GCTTTCCCTGATAAGGTGG 58 221761145 221761163 CCACCAGAATCCTCATCAG 57 NA Rattus norvegicus 81 Pstpip2 ENSRNOG00000016987 ENSRNOT00000022833 3 1 1 80 18 74282485 74282657 GAGGACTCAGACAAAGCGT 60 74282698 74282719 CTTAATGTGTTCACTCTGCCAG 60 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214,ENSRNOT00000077362 1 2 2 80 2 189876933 189877060 TAGAACAGCAGGATATGGTCTG 60 189877101 189877119 CAAGGATCTTCCGAAAGCC 59 NA Rattus norvegicus 81 P4ha3 ENSRNOG00000017118 ENSRNOT00000046943 2 1 1 80 1 165301739 165301757 CAAACGTCTGCAGTCTGAC 59 165301800 165303397 TAACCATCCTTCAGAGCTCG 59 NA Rattus norvegicus 81 Kcnh3 ENSRNOG00000057315 ENSRNOT00000086611 2 1 1 81 7 140896964 140897077 CAAGGTCAATGTGTACGTTGG 60 140897119 140897138 GTCCAGTCTTGGTAGTAGGC 60 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 1 4 4 80 10 18571857 18571875 GCACATACGCACATTACCT 58 18571042 18571813 GAGCAGTCACAAAGTCCTC 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645,ENSRNOT00000084851 2 2 2 80 1 267445722 267445740 AGTGCCAAATAACATGGCG 59 267444330 267445678 TTCTGCATGCCAAACACTG 59 NA Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 2 1 1 63 9 98113382 98113400 CTAAGCTTGGTCCTCCCAG 60 98113427 98114096 GGGTTCTTGTCTCCATGGA 59 NA DesignNoJunction Rattus norvegicus 81 Tln1 ENSRNOG00000016630 ENSRNOT00000022400 1 1 1 80 5 59052421 59053921 TCACTTTGGACTTTGGAGAC 58 59052360 59052378 CAATGAGCTGTGCAATCTG 57 NA Rattus norvegicus 81 Ube2u ENSRNOG00000023895 ENSRNOT00000035949 3 1 1 80 5 118578530 118581186 TCATCCAAATGTACACCCGT 60 118581225 118581247 GTATAACTAGTGTCCCACATGTC 59 NA Rattus norvegicus 81 Spon2 ENSRNOG00000046246 ENSRNOT00000075130 3 1 1 92 14 82869024 82869627 AGTGACTGAGATAACCGCC 59 82869683 82869701 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 Rn60_X_0707.2 ENSRNOG00000051133 ENSRNOT00000076093 2 1 1 127 X 69786780 69786801 TGTCTTCTCACAAGACTTTCAG 58 69786674 69786695 TGTCTTCTCTTAGAGTTGTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 2 2 2 80 2 197963040 197963058 AGCAACGAGACAAATCGAG 58 197962818 197962997 GAAGAAGGTGTCTTTGGCTG 59 NA Rattus norvegicus 81 Pom121 ENSRNOG00000001449 ENSRNOT00000001968 3 1 1 82 12 24333660 24333678 GAACCATGTCACCAGTCCA 60 24333724 24334018 GTGGCTGGATCTGTAACCT 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 3 3 3 80 11 73719939 73719957 GGATTCATGACAGCACACG 59 73719998 73720499 AAGTTTACCTCTGACGTAGTCC 60 NA Rattus norvegicus 81 Ndufa10 ENSRNOG00000016470 ENSRNOT00000022089 3 1 1 80 9 99638638 99640387 TCAACCAAGGTGGTAGAGG 59 99638576 99638594 GTGAAAGGTCCGATCATCC 58 NA Rattus norvegicus 81 Aqr ENSRNOG00000008912 ENSRNOT00000011952 2 1 1 80 3 105616986 105617004 TCTTGGTGCACTGTTACCT 59 105615576 105616944 TCAGCATGTCTAATAGCTGGG 60 NA Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980 2 1 2 80 20 25992703 26161908 TCCAGGGAATGTGAGATACC 59 26161949 26161969 CCCACAGTAACTTATTGTGGG 59 NA Rattus norvegicus 81 LOC688321 ENSRNOG00000045751 ENSRNOT00000071293 3 1 1 81 10 109952013 109952113 GGAGATCTTTGACAGGTCC 57 109952250 109952268 GTTAATCATGCCCTTGGCT 58 NA Rattus norvegicus 81 LOC100910259 ENSRNOG00000048823 ENSRNOT00000074399 2 1 1 80 1 282719675 282720433 TGGTTTACAGAATAGTGGCCA 60 282720475 282720493 TCTTGCCTCTTAGGCACTG 59 NA Rattus norvegicus 81 LOC680875 ENSRNOG00000023828 ENSRNOT00000014191 3 1 1 80 7 117185880 117186163 CAGAGCTTCTCACTAGTGAC 58 117185819 117185837 ACTCAGTCAGCTTTACACG 58 NA Rattus norvegicus 81 Moap1 ENSRNOG00000033970 ENSRNOT00000038816 2 1 1 60 6 126621480 126621500 TCCTCAAGATAAACAACCCGT 60 126621440 126621459 ATTGTCTCAAGCGTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmi1 ENSRNOG00000019108 ENSRNOT00000025812 1 1 1 60 17 6659646 6659664 AAGTGATGATGTGACGGTG 58 6659604 6659622 GGCAGTATCTGAGGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car9 ENSRNOG00000017073 ENSRNOT00000023060 2 1 1 80 5 59011027 59011047 TCTCAGAACTTCATGAAGCCT 59 59011088 59012226 TTTCTTCTGGACTCTCCTGC 60 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 3 2 2 80 1 72894988 72895257 TGTGGACTTTGATGACATTCAC 59 72895297 72895316 TCAAAGTGCACATCGATGAG 59 NA Rattus norvegicus 81 Kcna6 ENSRNOG00000052486 ENSRNOT00000080139 3 1 1 72 4 159280850 159280868 CATCCTAGAGGAGCAAGGA 58 159254232 159254250 TTTCCAGAGTGACCACGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Npff ENSRNOG00000047739 ENSRNOT00000074497 1 1 1 107 7 144127450 144127468 GACAGGATCCAGACTCCTG 59 144127259 144127379 ATTTCTGCCAAACCTCTGG 58 NA Rattus norvegicus 81 Stard3 ENSRNOG00000042044 ENSRNOT00000064190 1 1 1 80 10 86327001 86330072 TCATCGAGCTAAATACCAACAC 59 86330112 86330131 AGAATGAGCTCTGAAAGCTG 58 NA Rattus norvegicus 81 Olr1664 ENSRNOG00000052917 ENSRNOT00000089221 2 1 1 60 17 45801993 45802013 TCTTTGCTTCAATCAACCCTC 59 45802034 45802053 TGTCTACCTTGTTGTTTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc10a4 ENSRNOG00000026091 ENSRNOT00000029721 3 1 1 81 14 37768749 37769481 CATGAATCTCAGTATCATCATGACC 60 37768692 37768710 GCTGTAGATCCAGAGGCAG 60 NA Rattus norvegicus 81 Isg15 ENSRNOG00000021802 ENSRNOT00000039263 1 1 1 108 5 173626126 173626144 CTCTGACTGTGAGAGCCAG 60 173625411 173626054 TTAGGTTCCAGGTCATGGC 59 NA InUTR Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 1 2 2 80 6 135235771 135244151 TAATACGAGGGAGAAGACATCC 59 135235712 135235730 TATGGTCCAGCGATTTGCA 60 NA Rattus norvegicus 81 Usp24 ENSRNOG00000005802 ENSRNOT00000029228 1 1 1 80 5 125959906 125959924 ACCGAGCCAAAGAAATCTG 58 125959968 125960726 ACCACTCAAAGCACATCTC 58 NA Rattus norvegicus 81 Spam1 ENSRNOG00000007231 ENSRNOT00000009537 2 1 1 88 4 52200547 52200567 GATGAATCGAATCCAGTTCCA 58 52200614 52201461 ACAAGATCATCCTCTAGAAGGT 58 NA Rattus norvegicus 81 Cog8 ENSRNOG00000020379 ENSRNOT00000066312 1 1 1 80 19 39251913 39251932 GATTTACGTCTCTGTTGCCC 59 39249801 39251872 TTTGGTTACCTTCATAAGGGC 58 NA Rattus norvegicus 81 Zfp287 ENSRNOG00000003215 ENSRNOT00000004291 2 1 1 80 10 49145706 49145726 GATTCCCATCTTAGAAGAGCC 58 49136838 49145667 TGAGCTTTAGTTTCCCATTCTG 59 NA Rattus norvegicus 81 Ddx21 ENSRNOG00000043099 ENSRNOT00000068184 1 1 1 80 20 32226499 32227527 AACTTCTCAAAGCTCGTGG 58 32226437 32226455 AGTCCTTCCCACTGTACAC 59 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 2 2 2 80 14 86394418 86394437 GACCATCAGATTTGTCTGCA 58 86394130 86394377 GATATCCAAGTGTACACGCAG 59 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754,ENSRNOT00000091712 1 2 2 80 19 55892508 55892528 GATGAACTGAACATCGAGAGC 59 55892570 55893639 GGCATAGAGGGCATTTCCA 60 NA Rattus norvegicus 81 AABR07060995.1 ENSRNOG00000053275 ENSRNOT00000071605 3 1 1 60 4 102403591 102403609 GTCTCCTCAGCTTCTGACC 60 102403632 102403651 GAACCTGTCTGAGACTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpep2 ENSRNOG00000034206 ENSRNOT00000040164 3 1 1 61 1 141503965 141503988 CAGATAGAGGGTTGTATTATTGGC 59 141503927 141503948 TCTGCATCATCTAATACGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bricd5 ENSRNOG00000009611 ENSRNOT00000012794 1 1 1 85 10 13840243 13840333 GGCAAAGTGGCTACATCTG 59 13840382 13840400 CAGGGTCTCCCAATCTTGG 60 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198,ENSRNOT00000083028 2 2 2 88 5 149063489 149063507 GTTTGAGCATCCTGACCCT 60 149063559 149065106 CGGCAGGTAATTCATGTGG 59 NA Rattus norvegicus 81 Pnmt ENSRNOG00000046057 ENSRNOT00000073486 3 1 1 79 10 86341865 86341993 CATCGAGGACAAGGGAGAG 59 86342036 86342054 CATCAATGGGCAAGACTCG 59 NA DesignRelaxed Rattus norvegicus 81 Rps17l ENSRNOG00000048585 ENSRNOT00000036340 1 1 1 60 15 49009112 49009135 GCTATGTCATACATCTGATGAAGC 60 49009153 49009172 TTGATGGAGATGCCTCTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 1 2 2 80 16 7040467 7043927 GGATTATTGAAGGAAAGTTGCC 58 7043965 7043986 TGCTCAACATGGTTCTTATCAG 59 NA Rattus norvegicus 81 Tekt5 ENSRNOG00000002571 ENSRNOT00000003465 3 1 1 80 10 5362547 5365658 CAGATTAGAGATAATCGGGACG 58 5365695 5365717 CTCATCAATATACTGTGAGGAGC 59 NA Rattus norvegicus 81 Slain1 ENSRNOG00000024125 ENSRNOT00000065710 2 1 1 80 15 87888813 87896156 TAGGACCAATGGAGATAAACTACG 60 87896195 87896213 AGGTTGCTACTGACTGCAG 60 NA Rattus norvegicus 81 Fam43b ENSRNOG00000043113 ENSRNOT00000068065 2 1 1 146 5 156811442 156811460 AGCTTAACAAGGAGGACCC 59 156811314 156811332 TCAGTTTCATCTTCGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir490 ENSRNOG00000036272 ENSRNOT00000054395 2 1 1 60 4 63342945 63342965 GAAAGTTCATTGTTCGACACC 58 63342982 63343005 GGTTGGTGTATATCTAAACGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 3 2 2 80 6 28331667 28332014 CCAGAACTGTAAGAACTGCT 58 28332057 28332075 CAGCAGATGGTACAGTAGG 57 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211,ENSRNOT00000068199 1 2 2 80 3 63404230 63404358 TCATTTGAAGGTGAAATCCCAG 59 63404398 63404417 TCATTCTGACGGTACAACCT 59 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491,ENSRNOT00000089783 3 2 2 80 19 38082524 38082543 CACGAAATGATTGTGACTGG 58 38082586 38083719 AGGTCTTCCATCTTGTCCT 58 NA Rattus norvegicus 81 AABR07049524.1 ENSRNOG00000022150 ENSRNOT00000030319 2 1 1 99 5 125862756 125862774 CTGCAAACTCAGCCTTCTG 59 125862659 125862677 CTTGGTTTGAACCTTGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Cdrt4 ENSRNOG00000003294 ENSRNOT00000004392 3 1 1 85 10 49368352 49399760 CTACTCAGTAAGACTCACGGA 59 49399806 49399825 TAAATGTGACATAGGCTGGC 58 NA Rattus norvegicus 81 Wwc1 ENSRNOG00000008065 ENSRNOT00000011061 2 1 1 80 10 20712863 20713162 ACATCTCTGGGAGTTTCAGC 60 20712802 20712821 TTGCCTCTTCATACCGAAGG 60 NA Rattus norvegicus 81 Olr17 ENSRNOG00000057764 ENSRNOT00000077975 3 1 1 60 1 149683189 149683208 GGATTCCACACTACAGACAC 58 149683148 149683166 GATCTCCAGGAATGACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp238 ENSRNOG00000004423 ENSRNOT00000005849 1 1 1 60 13 95590397 95590415 GTCAAGTCCAGCCTTTCAG 59 95590435 95590457 CGTCCTGTGAAGAGAAATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp238 ENSRNOG00000004423 ENSRNOT00000005849 2 1 1 60 13 95590318 95590337 CTCAACAGAGTCTTTGTCCC 58 95590360 95590378 GTCAACATCTGCCGAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir488 ENSRNOG00000036265 ENSRNOT00000054388 2 1 1 62 13 76198602 76198621 TCCCAGATAATGGCACTCTC 59 76198646 76198664 TCTGACCAAGAAACAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raet1d ENSRNOG00000023659 ENSRNOT00000028992 1 1 1 80 1 1474800 1474820 CAGTCTTTCTCTGAGTCTGGG 60 1473571 1474762 CAACTAACAGAGTGTACATCGTC 59 NA Rattus norvegicus 81 Mir759 ENSRNOG00000040381 ENSRNOT00000062134 3 1 1 69 15 62025509 62025528 AAATGCCTAAACTGGCAGAG 59 62025560 62025578 TGTTTAAACAGCCAGTGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd17a ENSRNOG00000018212 ENSRNOT00000024576 2 1 1 80 7 11998470 11998572 GATGCTTTCCCTAACATCGA 58 11998615 11998633 GATCACCTCGTCTTCTGTG 58 NA Rattus norvegicus 81 Tas2r138 ENSRNOG00000026225 ENSRNOT00000031345 1 1 1 60 4 68831949 68831967 ATGAAAGACCCACTAAGCC 57 68831907 68831925 GGTTTGCGATCATCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atpaf2 ENSRNOG00000003719 ENSRNOT00000004948 2 1 1 80 10 46772674 46774119 GACACCATCTGCTACAGGG 60 46772612 46772631 CCACTCTATGATGGGATCCC 59 NA Rattus norvegicus 81 Cyp2b21 ENSRNOG00000032004 ENSRNOT00000049175 1 1 1 80 1 83411264 83412050 AACTGAAGAAATACAAGGGAGC 59 83411205 83411225 CAATGGAGCAGATGATGTTGG 60 NA Rattus norvegicus 81 Olr816 ENSRNOG00000005431 ENSRNOT00000007200 1 1 1 60 4 72566802 72566820 CAGACATGGATCACAGAGG 57 72566842 72566862 AACACTCCACAGGTAGATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eapp ENSRNOG00000004509 ENSRNOT00000006030 3 1 1 80 6 75589126 75589145 GGCTCCAGGATGACTATGAC 60 75581887 75589086 CTTCATCTTCAGAACTGCTCAG 59 NA Rattus norvegicus 81 Ddit4 ENSRNOG00000057078 ENSRNOT00000085026 2 1 1 105 20 29510954 29510972 CAGAGAAGAGGGCCTTGAC 60 29510617 29510887 CAGGTATGAGGAGTCTTCCTC 59 NA Rattus norvegicus 81 Cntn2 ENSRNOG00000009033 ENSRNOT00000012190 3 1 1 80 13 49289478 49289499 CATCTTCAGAGATGAACGTGAG 59 49288567 49289439 AGTAGCGAATCTCATATCCCA 58 NA Rattus norvegicus 81 AABR07022022.1 ENSRNOG00000023547 ENSRNOT00000034990 1 1 1 60 13 103080490 103080509 AACTCCCTCAAGATTGTCAG 57 103080449 103080467 ATGCCAAAGTTGTCATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 1 1 1 90 17 78739933 78740509 ATGAATCCTCAGGTGCAGG 60 78740563 78740581 CTCTGACAGGGAGCTACTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 3 1 1 131 17 78739933 78740509 ATGAATCCTCAGGTGCAGG 60 78740604 78740622 GACTGGATTCCCTCGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Anxa1 ENSRNOG00000017469 ENSRNOT00000023664 2 1 1 80 1 237900155 237901651 ACTAGAGTCTACAGAGAAGAGCT 60 237900097 237900116 GGCATTACGAAAGTCTCCAG 59 NA Rattus norvegicus 81 Npc1 ENSRNOG00000012016 ENSRNOT00000016167 3 1 1 80 18 3647759 3647780 GGTACAACTGTGAATATTCGGG 59 3646521 3647718 GTCCTGGACAGAGTTCCTG 59 NA Rattus norvegicus 81 Dnajc1 ENSRNOG00000000150 ENSRNOT00000000162 1 1 1 80 17 85057787 85057806 ATTATTCTCACCGTAGGCCA 59 85056565 85057749 CTTTCTACTAAGCAGTTCATCCAG 59 NA Rattus norvegicus 81 RGD1565912 ENSRNOG00000029600 ENSRNOT00000043909 2 1 1 60 5 72321466 72321484 CGTGATCTCTGAGAAGTCC 57 72321424 72321442 CTGCTCATCGATGTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501189 ENSRNOG00000019128 ENSRNOT00000026010 3 1 1 80 9 103200450 103200468 CTGGTTCCACCATCTTCCA 59 103193128 103200412 GAATATTCTTCCTTATCTCCAGGAC 59 NA Rattus norvegicus 81 Pars2 ENSRNOG00000007327 ENSRNOT00000057471 1 1 1 189 5 126254173 126255962 TATAGAGTGCTGCTGGTGC 60 126256113 126256133 ATGATACCCTGGTACATGGAG 59 NA InUTR Rattus norvegicus 81 Thg1l ENSRNOG00000005539 ENSRNOT00000007917 3 1 1 80 10 31049400 31049420 GGAAGAGTCGTGTTGTATCCT 60 31048238 31049361 ATTATTGATGTGACAGTCTGCC 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 3 2 3 120 9 111244242 111244260 TTTGATTTGTTACGCGCCA 59 111244343 111244705 GCATCACGATATTGCCAAGG 60 NA Rattus norvegicus 81 Nub1 ENSRNOG00000009282 ENSRNOT00000045311 1 1 1 80 4 6959092 6964896 GATACTTCTGTGAGTGCAAAGAG 60 6959034 6959052 AGTAGCACCACACGATGTC 60 NA Rattus norvegicus 81 Gnl3 ENSRNOG00000028461 ENSRNOT00000033677 2 1 1 80 16 7099037 7099397 TGGGACTTACAAGGAGTATGC 60 7098977 7098997 GTGAGATAATGAAGCACGGAC 59 NA Rattus norvegicus 81 Vezt ENSRNOG00000006514 ENSRNOT00000030015 3 1 1 80 7 34892590 34892611 CTGGGATTTAAAGCTTCAGAGG 59 34889451 34892550 CAAGGATTTCAACACAGCGT 60 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448,ENSRNOT00000045050 3 2 2 80 14 36200927 36200948 CAGTGACGATGATGAAGATGAC 59 36198062 36200889 GTTCCATAACTCCCATACTGTG 59 NA Rattus norvegicus 81 Ddx3y ENSRNOG00000002501 ENSRNOT00000003378 3 1 1 60 13 105409456 105409478 CAGGAAATTCTCATACCGATCTC 59 105409495 105409516 AATATCAGCTCCACCATAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h3a ENSRNOG00000050478 ENSRNOT00000074292 3 1 1 84 17 43626288 43626306 ACTTCAAGACCGACCTTCG 60 43626222 43626240 TCAAACAGACCCACAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btd ENSRNOG00000019656 ENSRNOT00000061063 1 1 1 82 16 7788933 7789816 TTCAATGACACGGAGGTCC 60 7789862 7789880 TTTGTCCCAAGATTGGCCA 60 NA Rattus norvegicus 81 Dusp5 ENSRNOG00000014061 ENSRNOT00000018889 2 1 1 80 1 274245729 274250026 CCTTAAAGGTGGGTACGAG 57 274250069 274250088 AGCTTCTCTTGTGAAATGGG 58 NA Rattus norvegicus 81 Gpr37l1 ENSRNOG00000006237 ENSRNOT00000008282 1 1 1 106 13 51987296 51991884 CTTCATGGAGGTCTCCTCC 59 51987208 51987226 CAATGGGTCTCACCTTTGG 59 NA Rattus norvegicus 81 Chst9 ENSRNOG00000015867 ENSRNOT00000021253 2 1 1 80 18 6865158 6969998 ACAGAAAGGAGTATCGGTGAC 60 6835892 6835911 TCTTCGGGTATGTGAACCTC 59 NA Rattus norvegicus 81 Col23a1 ENSRNOG00000046785 ENSRNOT00000004510 2 1 1 88 10 34921629 34923242 TTAGATGCCCTGAAGGGTC 59 34923979 34923997 CCAGGCAATCCAAGTTCAC 59 NA Rattus norvegicus 81 Cfap43 ENSRNOG00000036585 ENSRNOT00000031925 3 1 1 80 1 267573628 267573646 GAGCCCAGCTTATCAATCC 58 267572028 267573587 AGTATATCACACCGTCAATTCC 58 NA Rattus norvegicus 81 Mir879 ENSRNOG00000041321 ENSRNOT00000063074 3 1 1 60 4 21673687 21673707 TAGATCCAGAGGCTTATAGCT 57 21673647 21673666 GAAAGCTTGAAGCCATAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2aa ENSRNOG00000048122 ENSRNOT00000050526 3 1 1 65 17 43422606 43422624 AAGAAGACGCGCATTATCC 58 43422559 43422578 CTTATTGAGCTCCTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1600 ENSRNOG00000047062 ENSRNOT00000050469 2 1 1 60 13 92376952 92376971 TAGGCTTCTCTGTTTACCCA 58 92376994 92377012 TACAGGCAAAGGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dsel ENSRNOG00000032307 ENSRNOT00000043890 3 1 1 60 13 1944542 1944563 CAGTATACAAGAAGCAGAACAG 57 1944503 1944522 ATTAACGAACTGAGTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 1 2 4 126 2 118563168 118565896 GTACATGCAGAGTGTATGGAC 59 118565984 118566002 CAGGCAAGGGTACTGAGAG 60 NA Rattus norvegicus 81 LOC100360124 ENSRNOG00000039782 ENSRNOT00000061040 3 1 1 60 15 5784062 5784082 AGAAAGACCCAAGAAATCCTC 58 5784103 5784122 TCACAGATTCCAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr24 ENSRNOG00000050054 ENSRNOT00000042931 2 1 1 60 1 150100528 150100551 CATCTGTGTTGTGATCTCTTACTG 60 150100491 150100510 AGTGGTAGGAATCTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Def8 ENSRNOG00000000264 ENSRNOT00000000281 2 1 1 81 19 56244206 56245601 GAAGTCACTTCTGAAGACACTC 59 56245643 56245661 CAAGATCCATCATGCGCTC 59 NA Rattus norvegicus 81 Acadsb ENSRNOG00000020624 ENSRNOT00000027999 2 1 1 80 1 202017096 202019354 TATTATGCATCAGAGGTCGC 58 202019396 202019415 GTAATCTTTGGTGTAGCCGA 58 NA Rattus norvegicus 81 Mc5r ENSRNOG00000016685 ENSRNOT00000022364 1 1 1 60 18 64115254 64115273 TCAATAACAAGTCTTCCGCC 58 64115296 64115314 AGAGTTAGGAACACCTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561310 ENSRNOG00000045968 ENSRNOT00000048997 2 1 1 60 17 36438539 36438559 GGCACCTAAAGATTGTCTACC 59 36438499 36438518 TTAGGTGTTGTTCCTTCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbd1 ENSRNOG00000024104 ENSRNOT00000032202 1 1 1 80 18 70257754 70257778 GAGAACAAAGAAGATGATGTCTCTG 60 70257816 70257921 AATCTCCGTGATCACTGGG 59 NA Rattus norvegicus 81 Mbd1 ENSRNOG00000024104 ENSRNOT00000032202 2 1 1 81 18 70254214 70254232 GAATCCACCTGTCATGGGA 59 70254277 70254477 AAGGCAATTCTCTGTGCTC 58 NA Rattus norvegicus 81 Ercc6l2 ENSRNOG00000019175 ENSRNOT00000025965 1 1 1 80 17 1388886 1389881 AAACTAGAAACACCTAGAGACC 57 1389921 1389940 CTCCTCATCACTCATGTCAC 58 NA Rattus norvegicus 81 RGD1565685 ENSRNOG00000023187 ENSRNOT00000031808 2 1 1 80 X 11092889 11095963 GGTGTTGTCAGAAGAGATCTC 58 11096003 11096023 AGGGCATTTCTAAGATCTGTG 58 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 3 2 2 80 5 59081657 59081676 GTATCCTGTCTACTCCACCA 58 59081716 59081834 CACTGTAGGAGTATGATTTGGA 57 NA Rattus norvegicus 81 Rab27a ENSRNOG00000052499 ENSRNOT00000083957 2 1 1 80 8 79753820 79753839 CTGATGGGAAGTTCAACTCC 58 79753882 79759432 CATTCGCTCTGTACACCAC 59 NA Rattus norvegicus 81 Tbl3 ENSRNOG00000013429 ENSRNOT00000018405 2 1 1 80 10 14071469 14071489 GTGGTACCAAAGTCAACATCC 59 14071318 14071430 TAATGTCCTCTTGGTCTTCCTG 60 NA Rattus norvegicus 81 Psme1 ENSRNOG00000019041 ENSRNOT00000025887 3 1 1 80 15 34257006 34257170 GAGGACCTGTGTAGTAAGACAG 60 34257207 34257229 CTTTAAGAAGGCATCCAACTCTG 60 NA Rattus norvegicus 81 Dot1l ENSRNOG00000032546 ENSRNOT00000051467 1 1 1 80 7 11795355 11795867 GTAGTGAGAAGGGTGTAAAGGA 59 11795296 11795314 TGAGTGGAATGCTGACAGG 60 NA Rattus norvegicus 81 Krtap16-5 ENSRNOG00000040064 ENSRNOT00000061606 3 1 1 60 11 28900105 28900123 TATGGCTCTGGCTTTGGAG 60 28900063 28900081 ATCCTCCATAGTGTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnna3 ENSRNOG00000000378 ENSRNOT00000049437 1 1 1 80 20 26589155 26589174 AGATGGACATGCAGGATCTG 60 26564247 26589117 GGGTAGTAACCTGGATTATCAGAG 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 2 1 2 189 4 161727351 161728158 GGGTTAGGAAAGAGGGTCC 59 161728500 161728989 AAAGGTGGCCTACCTTGAG 59 NA Rattus norvegicus 81 Serpina12 ENSRNOG00000042634 ENSRNOT00000012960 1 1 1 80 6 127702789 127704651 CTATATTTACTTTCAAGGCAGGTGG 60 127702733 127702755 CCTTCCTCTATGAAGAAGTCCTC 60 NA Rattus norvegicus 81 Tube1 ENSRNOG00000000598 ENSRNOT00000047194 3 1 1 80 20 44233338 44233357 GCTTCATTATCTCGTGTCGA 58 44233400 44235448 ATCTGATCCAATCTCCGGG 59 NA Rattus norvegicus 81 Arl8a ENSRNOG00000005988 ENSRNOT00000008164 2 1 1 80 13 51978858 51979948 CGCCATCGTGTATATGGTG 59 51979992 51980010 TTGTCTAGCAGGTTGTGGA 59 NA Rattus norvegicus 81 Gje1 ENSRNOG00000012092 ENSRNOT00000016102 3 1 1 81 1 8885228 8885936 AAGGATGTGTTAAACCTCCCA 59 8885167 8885186 ACTCCAAGGAAGAACATCCG 60 NA Rattus norvegicus 81 Hcrtr2 ENSRNOG00000011251 ENSRNOT00000015824 1 1 1 80 8 83347500 83347518 TTGTTGACATCACCGAGAC 58 83343437 83347456 CAGACACTGACACAGTCTG 58 NA Rattus norvegicus 81 LOC100912380 ENSRNOG00000048194 ENSRNOT00000074211 1 1 1 80 1 88656312 88656331 TATTGAGGCCAACGAGAGTG 60 88656120 88656269 CTGACCTCCATGTCGTCTC 60 NA Rattus norvegicus 81 Nudt13 ENSRNOG00000048195 ENSRNOT00000070933 1 1 1 101 15 4443200 4443218 AGATTCAGTGCTGGTTGGA 59 4441818 4443135 GATTTCGGCAAAGAGGCTC 59 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939,ENSRNOT00000017907 1 2 2 80 4 10677351 10681452 TTGTATCCATTGCAGTGCAG 59 10681493 10681513 CCTGCTTTCAGTAAGTTCCAC 59 NA Rattus norvegicus 81 Zc3h12a ENSRNOG00000009131 ENSRNOT00000012314 2 1 1 81 5 143114783 143114801 GCCATACAGACATCACCGT 60 143113802 143114739 ATGTGCTGGTCTGTGATAGG 60 NA Rattus norvegicus 81 Gabrb1 ENSRNOG00000002327 ENSRNOT00000003170 3 1 1 80 14 38758741 38758759 AGCTTGCATGATGGATCTC 58 38664163 38758700 GTGGTATAGCCATAACTTTCGA 58 NA Rattus norvegicus 81 Pdyn ENSRNOG00000026036 ENSRNOT00000037576 3 1 1 99 3 122197573 122197592 TCTGAGGTTACAGCAGACTG 59 122196385 122197511 ACTCCAGGGAGCAAATCAG 59 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769,ENSRNOT00000028814 3 2 2 80 2 198829029 198829047 CCTGGTGTCCAATGAAACC 59 198829090 198829188 TATACTGGAGACCATCCAGC 58 NA Rattus norvegicus 81 Cask ENSRNOG00000003054 ENSRNOT00000004187 3 1 1 80 X 9442542 9446831 GAACTTCAGGAATGGCGAG 59 9446875 9446893 GCCAAACCAAGTACAGCTG 60 NA Rattus norvegicus 81 Ldlrad1 ENSRNOG00000037795 ENSRNOT00000057372 2 1 1 80 5 126818032 126818927 AGAACTTGTGTCGAGATTTGC 59 126818968 126818987 AGTAGATCCAGGAGTCTGGG 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 1 1 1 60 1 88621374 88621393 GGACAACATCCTGTACAGAC 58 88621416 88621829 TAAACAGTAGGCAGTGCCC 60 NA DesignNoJunction Rattus norvegicus 81 Cdk19 ENSRNOG00000000583 ENSRNOT00000000713 2 1 1 80 20 45586437 45591424 TTCGAAGAACAACGTATGCC 59 45591467 45591485 GGAACACTTTGCTGTCAGG 59 NA Rattus norvegicus 81 Ppp1r12b ENSRNOG00000051440 ENSRNOT00000089068 1 1 1 80 13 51666074 51666093 CAAGTAGAGCTTCAGTCCCT 59 51665808 51666032 CTTCTTTCTCACTCGTGTCC 58 NA Rattus norvegicus 81 Ascl5 ENSRNOG00000033391 ENSRNOT00000048033 2 1 1 71 13 52887807 52887825 CTACGATGCCTACACTGGG 60 52887860 52887878 AACGGGTAGTCGTAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 3 3 3 80 X 77292175 77292680 AATTTGCCTTCCGATATGTGAC 60 77292116 77292137 CATCCACAGTAGGTTTCTTAGC 59 NA Rattus norvegicus 81 Atp8a1 ENSRNOG00000034200 ENSRNOT00000044017 3 1 1 80 14 42161394 42161417 AATAGAGTCTCCAAGTGTATCCTG 60 42161454 42168552 GACAAAGGCAAACCAGATCTC 60 NA Rattus norvegicus 81 Gja10 ENSRNOG00000006478 ENSRNOT00000008469 3 1 1 60 5 47835731 47835750 AGTCTCACTACTTCAAGCCA 58 47835690 47835709 AGACCTTGGTATGTTGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000089622 2 1 2 60 20 3820210 3820228 CTTTCTCCTTTCTGCCCTC 58 3820168 3820186 CAATGCTCCAATTGCAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000089622 3 1 2 60 20 3820276 3820295 TCCTTACATGGACACCACAC 60 3820235 3820256 TCATCAACAACTAAAGGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata4 ENSRNOG00000048035 ENSRNOT00000071331 3 1 1 83 16 39968856 39968875 GGAACAATTCACTGTAAGGC 57 39968683 39968813 GCTTCTAATTTCTTGATGGGTG 58 NA Rattus norvegicus 81 Cryl1 ENSRNOG00000008989 ENSRNOT00000012093 2 1 1 80 15 37569122 37569140 AGATCGATGGCTTTGTCCT 59 37553330 37569079 ACACTATTCCTTCCTCCACC 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000006532 ENSRNOT00000050223 1 1 1 143 10 104575378 104575775 CTTCAGCTTTGGGTGAGAG 58 104575253 104575271 CGATGAGGTTTCTTCACCC 58 NA InUTR Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031,ENSRNOT00000060264 1 2 2 80 5 59366927 59366945 CCCAGATTATTGCCCAGAG 58 59367913 59369956 TCCGACTTCTTAAATACACCTG 58 NA Rattus norvegicus 81 AC115145.1 ENSRNOG00000058087 ENSRNOT00000085651 2 1 1 80 1 63683297 63683441 TAGTGACAGGATTCTACAGCA 58 63683237 63683256 TGAGAGTCACATTTCCTCCT 58 NA Rattus norvegicus 81 Npepo ENSRNOG00000017505 ENSRNOT00000023638 3 1 1 81 17 699024 718537 GAATGCAGGTGTTAAGACCC 59 718578 718599 TTGAGTCCATTCTTGACAACAG 59 NA Rattus norvegicus 81 LOC679881 ENSRNOG00000017095 ENSRNOT00000023010 1 1 1 86 1 35868422 35868440 AGATCCTTGTTCCTGAGGG 58 35868490 35868512 AGGCCTCAATATCCTGAGG 58 NA Rattus norvegicus 81 Ube2t ENSRNOG00000005038 ENSRNOT00000006747 3 1 1 80 13 51795964 51796776 ATTTGCGAGCTCAAATACTAGG 59 51796814 51796835 TTTCAGGAACGATAACTTCCAG 59 NA Rattus norvegicus 81 AABR07065970.1 ENSRNOG00000000124 ENSRNOT00000000136 1 1 1 60 9 110727 110747 GAATACTGAGTACCTGATGCC 58 110687 110709 GAAATAGTAGAGAAGGGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem54 ENSRNOG00000024259 ENSRNOT00000033285 2 1 1 94 5 147291662 147293941 CCATTGTGGTCATCCTTGC 59 147294088 147294106 CACACTCAGGCTAAACACG 59 NA Rattus norvegicus 81 AABR07051741.1 ENSRNOG00000057548 ENSRNOT00000044699 2 1 1 60 3 20641910 20641928 GTTGCCACATATTTCTGCC 57 20641951 20641970 TGCTATGGTTTGTATCACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr690 ENSRNOG00000047252 ENSRNOT00000073165 1 1 1 60 3 78065920 78065940 CTGGCTTTCCTGTCTTTACTG 59 78065880 78065900 CAATCATCTTGGGTGTCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shoc2 ENSRNOG00000015339 ENSRNOT00000020580 3 1 1 80 1 274718525 274731570 CCCAGACACAATAGGAAACC 58 274731611 274731631 AATGATCTGGGTATTGCTGAC 58 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129,ENSRNOT00000065145 1 2 2 80 10 102357259 102357361 CTTCACCTACTACAGCTTCC 58 102357198 102357219 TGGATCTTTCTAGAAGGTTGAC 58 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 1 2 3 88 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146092 115146110 TAGGAACATGAGGAGCAGG 59 NA InUTR Rattus norvegicus 81 AABR07015180.1 ENSRNOG00000026134 ENSRNOT00000031524 3 1 1 81 14 48270918 48270936 CCCACGGTTACATTACACC 58 48270853 48270874 TTTACTTCTCCACGACTGTC 57 NA Rattus norvegicus 81 AABR07063459.1 ENSRNOG00000049435 ENSRNOT00000071242 1 1 1 80 6 31011736 31011788 GCAAATTCACGCATCATCC 58 31011829 31011850 GCCTCTCGAATTTACATTTCTG 58 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 2 3 3 89 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589941 31589960 CATGTTACAGGGAATGAGGC 59 NA Rattus norvegicus 81 Tmem127 ENSRNOG00000022727 ENSRNOT00000031577 3 1 1 86 3 119685814 119685832 CCTGTTGGATGTCTTTGGG 59 119685882 119686636 CACTGTAGGACAGTGAGGA 58 NA Rattus norvegicus 81 Olr921 ENSRNOG00000050939 ENSRNOT00000071350 1 1 1 60 7 3900556 3900575 TTCTCCTTGCTATCATGTCC 57 3900596 3900616 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912159 ENSRNOG00000046583 ENSRNOT00000074072 3 1 1 60 10 12433245 12433263 AACCCTTTCATCTACAGCC 57 12433203 12433223 TGAGCACTTTCTTTAGAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000090071,ENSRNOT00000084230 2 3 7 118 1 83653320 83653338 AAGCAGAGGAAGCTCTCAG 59 83653419 83653704 CGTTGGCTGATCTTCATGAG 59 NA Rattus norvegicus 81 RGD1563263 ENSRNOG00000006884 ENSRNOT00000009068 1 1 1 82 3 81294572 81294590 TCAGCGATCTGTTCCTGAG 59 81294636 81294821 TTAGCCCGTAGTCATCCAC 59 NA Rattus norvegicus 81 RGD1563263 ENSRNOG00000006884 ENSRNOT00000009068 2 1 1 83 3 81294572 81294590 TCAGCGATCTGTTCCTGAG 59 81294637 81294822 CTTAGCCCGTAGTCATCCA 59 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577,ENSRNOT00000083395 2 2 2 80 8 13567993 13569136 ACTTCAAAGATTTGGACCTGAG 59 13567934 13567953 ATGAATTCAGAAGTCGCTGG 58 NA Rattus norvegicus 81 AC096404.1 ENSRNOG00000000574 ENSRNOT00000000700 3 1 1 105 20 29579060 29579568 TCTATCTGCATGGGATCGG 59 29577786 29577804 TCATCAGTAGGGACACCAC 58 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 3 2 2 80 15 35415512 35415659 GCTGTTAAAGCTGAAGAGTAAGG 60 35415454 35415472 TTCACTTTGACGTTGCGTC 59 NA Rattus norvegicus 81 Olr357 ENSRNOG00000053559 ENSRNOT00000073539 2 1 1 60 1 230056851 230056874 ATTATCTTGGACTCCAGACTACAC 60 230056891 230056911 CAAAGGAGAGGTTACTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256,ENSRNOT00000056221 3 2 2 82 7 119841360 119841378 TGTGAAGACATGGAAGCGA 59 119841424 119842214 GAGGCTCTTTGTCAGTGGT 60 NA Rattus norvegicus 81 AC105662.1 ENSRNOG00000060851 ENSRNOT00000081220 1 1 1 81 5 173003686 173003707 GATCCAGGAGGAGAAGCAG 59 173003623 173003644 GACCTCATTCAAGTCATCAGTG 59 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 1 2 2 109 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044071 51044089 TTGTTCCAGCCAAACATGG 59 NA Rattus norvegicus 81 Cyp2c11 ENSRNOG00000052810 ENSRNOT00000088853 1 1 1 80 1 258003073 258003094 CTGGTCACTTTCTAGATGAGAG 58 258003134 258003895 CACATATCCTCTTTCCTGCT 57 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586,ENSRNOT00000073105 2 2 2 80 12 31220108 31220127 CGATGAGTTCATCATCTGGG 58 31217611 31220065 GGATATTTACCGACGGCAG 58 NA Rattus norvegicus 81 Olr188 ENSRNOG00000017351 ENSRNOT00000023293 2 1 1 60 1 169944971 169944989 TTATGACCGCTTTGTTGCC 59 169945011 169945031 TTTATTGGTGAGGATCGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr87 ENSRNOG00000021290 ENSRNOT00000039822 2 1 1 60 1 168391425 168391446 CGTTACATTCACATTCTCTTGG 58 168391465 168391485 CTGGATTTAAACAAGGAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpn2 ENSRNOG00000024384 ENSRNOT00000048746 1 1 1 86 11 74057402 74057420 TCTCTTCTGTTTCCGAGGA 58 74065288 74065306 AACATAACCAGGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Stau1 ENSRNOG00000007781 ENSRNOT00000010633 3 1 1 80 3 163717757 163717775 GTGAAACATGATGCCACTG 57 163714672 163717715 TCTTCCATTTACCTCTAGCCT 58 NA Rattus norvegicus 81 Olr472 ENSRNOG00000009670 ENSRNOT00000012814 2 1 1 60 3 73352959 73352979 GATTTAACCTCTCCCTCTCCC 59 73352997 73353019 GCAGGAAAGATATACAGGTAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.1 ENSRNOG00000022251 ENSRNOT00000029030 3 1 1 60 X 73988411 73988430 GTACAAGAAGCGTTCTGTGG 59 73988370 73988388 AAGCTTGGCACAAATGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.1 ENSRNOG00000050693 ENSRNOT00000073385 3 1 1 60 11 29087780 29087798 CTATGGCTGTGGCTATGGT 59 29087821 29087840 GCAGCATCCATAACCATAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026,ENSRNOT00000024900,ENSRNOT00000088041 3 3 3 80 2 199894257 199895346 AGCCATATTAAGTGAATCCCTG 58 199894198 199894216 CAAGTCTCATAGCCCAGGT 59 NA Rattus norvegicus 81 Mzt2b ENSRNOG00000001834 ENSRNOT00000002511 2 1 1 80 11 89277670 89277848 CGATGTGTTCAAGATTCTAGTGG 60 89277887 89277906 CACATGGACTTCAGCATCTG 59 NA Rattus norvegicus 81 Olr1200 ENSRNOG00000051184 ENSRNOT00000076308 1 1 1 60 8 40345206 40345225 GATTAACAGACCAGCCTGAC 58 40345245 40345266 ATGTAGAAACCGAGAAAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccar1 ENSRNOG00000000397 ENSRNOT00000067004 3 1 1 80 20 32390070 32390889 GGAGAACAGGATGAAGAAGAG 58 32390010 32390031 TGGATCAAGTTTAGACCAATGG 59 NA Rattus norvegicus 81 Arhgap15 ENSRNOG00000031168 ENSRNOT00000049884 1 1 1 80 3 28763511 28934841 TCTTTCAGATCACAACAGCA 58 28934881 28934902 CATGGAACCAATCCAATATGAG 57 NA Rattus norvegicus 81 Ddx58 ENSRNOG00000006384 ENSRNOT00000060765 1 1 1 80 5 56511089 56511108 AAGCCTTCTTCCATGATGTC 58 56500742 56511047 CTTCAAAGCCTTCAAACCTC 57 NA Rattus norvegicus 81 LOC690521 ENSRNOG00000048094 ENSRNOT00000075275 3 1 1 60 3 149791402 149791422 AAGAAGGAAGAGGAAGACGAC 60 149791443 149791462 CTTCCTCTTCCTCCTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862,ENSRNOT00000087961 3 2 2 80 1 216730806 216730826 AAGATGAAATCAGAGCCAGAC 58 216728654 216730766 TATTGTACACCCATCACAGTC 58 NA Rattus norvegicus 81 Clca2 ENSRNOG00000013771 ENSRNOT00000018435 1 1 1 80 2 250968433 250970060 GAAGATGGCAGAGGGAGAC 60 250968371 250968390 GTATGAGCTTCAACGACCTG 59 NA Rattus norvegicus 81 LOC498236 ENSRNOG00000025987 ENSRNOT00000036094 1 1 1 80 13 53033197 53034162 AGAACATGCCTCATTCCCA 59 53033135 53033154 GCTATGTTGCAGAGGATGAG 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869,ENSRNOT00000003928 1 3 3 80 13 71988613 71988632 TACTCTTCCTCCTCTTCCTC 57 71988099 71988573 CATTAAAGTTAAACCTGCCTCC 58 NA Rattus norvegicus 81 Srd5a1 ENSRNOG00000017601 ENSRNOT00000023659 3 1 1 135 1 36329907 36336437 GTTTCCTGACAGGCTTTGC 60 36343281 36343302 GATACGTATTCAAACAGGCCTC 59 NA Rattus norvegicus 81 Ankrd54 ENSRNOG00000010821 ENSRNOT00000014413 1 1 1 80 7 120287056 120287074 ACTGAACATCCTGCAGGAG 59 120286164 120287013 CGTAGCATGTGGATGATCTG 59 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 2 2 2 80 15 3239094 3293850 AATGAAAGTGGCTCAGTGGA 60 3239033 3239054 CCGAACTTATCTATCCCAATGC 59 NA Rattus norvegicus 81 Stim2 ENSRNOG00000002956 ENSRNOT00000004006 1 1 1 80 14 59207088 59207344 CTGGAAGCCAAGAAAGCAC 60 59207026 59207045 GATCTTCTCAATCTGCTGCC 59 NA Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 2 2 2 80 16 36001763 36001782 GTTTGGATTTAACATGGCGG 58 36001824 36032277 TACTTGCATTCTTCTTGGCG 59 NA Rattus norvegicus 81 Mdp1 ENSRNOG00000019840 ENSRNOT00000026914 2 1 1 90 15 34338682 34338810 TTGATCTGGATTACACGCTC 58 34338541 34338561 CTATCTCGTACAGTTCCATCG 58 NA Rattus norvegicus 81 Tut1 ENSRNOG00000020047 ENSRNOT00000027187 2 1 1 80 1 225158640 225158659 TCCTGTGGTCAAGTTCTGTC 60 225158700 225160336 GAATTATACAAGGCCAACCGG 60 NA Rattus norvegicus 81 Tpbpa ENSRNOG00000039975 ENSRNOT00000061427 1 1 1 87 17 4166521 4166542 GACTGTCAAACTGTACAATAGC 58 4166590 4166706 TTCATCAGTCAGCTCACTG 57 NA Rattus norvegicus 81 AC117101.1 ENSRNOG00000013292 ENSRNOT00000017738 3 1 1 60 15 28803122 28803141 AGGGACATAGAGATCTGGAC 58 28803081 28803100 TAATGCTTCTTGTTGGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150,ENSRNOT00000090982 2 2 2 60 17 89880251 89880270 AACTGGAAACACTAACTGCT 57 89880210 89880229 GAGGGCTGATTACTTGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 3 2 2 91 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187095 184187114 ATATAGTTCTGCACCAGTGC 58 NA Rattus norvegicus 81 Yeats2 ENSRNOG00000023107 ENSRNOT00000064212 2 1 1 80 11 84374553 84374571 GTGCCTAATCCTGAGTCAC 58 84371390 84374511 TGATATTGGAGAACCTGAGAC 57 NA Rattus norvegicus 81 AC103179.2 ENSRNOG00000047174 ENSRNOT00000074051 1 1 1 60 18 29975092 29975110 AGTACCCACCTAAGACCGA 59 29975131 29975152 CTGTCCCTTGAATCAGATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3b5 ENSRNOG00000014908 ENSRNOT00000019994 2 1 1 60 1 7101965 7101983 CATCGGGATTCCTACTGCT 59 7102006 7102025 CAATGGCGAAGTAGTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp397 ENSRNOG00000048101 ENSRNOT00000071548 2 1 1 105 18 15858814 15858833 GATATGGGTTCAACAGCACG 59 15858901 15859123 ATTATCTGGGACCTGCTGC 60 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 2 4 4 80 17 4256428 4256726 TACAACACGAACGAAGAAGGA 60 4256768 4256786 ATAGTCCTCGTTGTGCAGG 60 NA Rattus norvegicus 81 Tbcc ENSRNOG00000048291 ENSRNOT00000073079 1 1 1 60 9 16405418 16405437 CTCCGGTTTAGATAGGAGCA 59 16405377 16405396 GGCTAGCCAATTGAAATCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 3 2 2 81 13 53318588 53319238 GAGATACTGAAGGGACTACTGG 59 53319280 53319298 TGACCAAATCTAGGCCTCG 59 NA Rattus norvegicus 81 Mir381 ENSRNOG00000035493 ENSRNOT00000053616 2 1 1 60 6 133876606 133876625 GGTACTTAAAGCGAGGTTGC 59 133876647 133876666 GCCCTTGTATATCCCATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem91 ENSRNOG00000021302 ENSRNOT00000038300 2 1 1 80 1 82467901 82467919 TTCTTCTCCCACCTCTTCC 58 82465280 82467857 CACTGGATGATGTGTCCTC 58 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258,ENSRNOT00000081599 1 2 2 80 7 59930758 59930858 GTTTGCAGATACCGGATCAC 59 59930697 59930715 CTGCTGTTTCACAAGTCCC 59 NA Rattus norvegicus 81 Mrpl53 ENSRNOG00000053109 ENSRNOT00000086051 3 1 1 119 4 113942125 113942323 TCAACAAGGACCTTTCTCCA 59 113942405 113942423 GAATAACACGTCCACGCAG 59 NA Rattus norvegicus 81 Serpinb3a ENSRNOG00000002578 ENSRNOT00000003475 1 1 1 80 13 27154992 27155013 AATACCATACAAAGGCAAGGAG 59 27154319 27154954 TGTTCTTCAAGCTTCTTCAGAC 59 NA Rattus norvegicus 81 Cacna1s ENSRNOG00000046231 ENSRNOT00000074366 3 1 1 80 13 52911403 52911423 CTTTGGCTTCTCTATGCTCAC 59 52911464 52912579 GCATCATTGACCCAGTACAG 59 NA Rattus norvegicus 81 Cwh43 ENSRNOG00000002174 ENSRNOT00000002980 1 1 1 80 14 37355370 37355390 GCTATCAGATGTCCAACAGAG 58 37353765 37355328 TGTAGTCACCATCTGTGCT 58 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603,ENSRNOT00000078987 2 2 2 80 9 92663667 92663687 GCTTACTCCCAAGTAGAAGAC 58 92663729 92664990 CTTAGGGTCCTTGAACGTG 58 NA Rattus norvegicus 81 Mir881 ENSRNOG00000041299 ENSRNOT00000063052 2 1 1 61 X 151283957 151283979 CAATATTCAGAGTGGTAGCAGTC 59 151283918 151283939 ACTCTATTCAGAAATGCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P3h3 ENSRNOG00000016071 ENSRNOT00000021578 1 1 1 80 4 157372805 157372828 TGGCTAAGTATAGGAGAATGTCTG 60 157372100 157372767 CATAAGCTGCCCAATACAGG 59 NA Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632,ENSRNOT00000013118 3 2 2 82 16 48621782 48621800 TTATCTGAGCGACCTTCCA 58 48610497 48621485 ACTGGTTCTTGCTTGATGTG 59 NA Rattus norvegicus 81 Fam20a ENSRNOG00000003969 ENSRNOT00000005367 2 1 1 80 10 97964718 97965384 TCCTGATTGGAAACATGGAC 58 97964657 97964678 TGTCAAGATGAATAAGGTACCC 58 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 1 2 3 81 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717824 164717845 GGGTGTAGATGATAGGGTTGAG 60 NA Rattus norvegicus 81 Gnb1l ENSRNOG00000001891 ENSRNOT00000002596 3 1 1 80 11 86598280 86598299 AAGAGTTCCATCTTGGTCAG 57 86594232 86598237 CAGAATCTGAACCTCGTCG 58 NA Rattus norvegicus 81 AABR07065776.2 ENSRNOG00000047996 ENSRNOT00000045885 2 1 1 80 6 140834022 140834121 AGCTACACGTGTCTACTCAG 59 140833961 140833980 GACAACTTGACTGAGGACCA 60 NA Rattus norvegicus 81 AABR07015559.1 ENSRNOG00000055015 ENSRNOT00000086658 3 1 1 80 14 63415748 63415766 TCTGTGGAGTTCTCTGAGC 59 63415806 63439437 AGATCTTTACCAATCCTCTCCTC 59 NA Rattus norvegicus 81 Bcl2l2 ENSRNOG00000015732 ENSRNOT00000020409 3 1 1 168 15 33544400 33544703 CTTCTTCCTGACTCGGCTC 60 33545297 33545316 TAGCCTACAAAGTCAGCCAC 60 NA InUTR Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 2 1 1 61 X 124515487 124515505 TGGTATTTGATGGAACGCG 59 124513288 124515462 CCCTTGGACACATAGTAGC 57 NA DesignNoJunction Rattus norvegicus 81 Ipo9 ENSRNOG00000007418 ENSRNOT00000011105 2 1 1 80 13 52229735 52229753 GTTAAGAAAGCGTTGCCTG 58 52228114 52229692 CGTCCACACTTTAATCTGCT 58 NA Rattus norvegicus 81 Ipo9 ENSRNOG00000007418 ENSRNOT00000011105 3 1 1 80 13 52232884 52232902 CAGATGCCACTTGTTGCTC 60 52231572 52232842 CGTTCGAATACCATACACCTC 59 NA Rattus norvegicus 81 Nhlrc4 ENSRNOG00000039279 ENSRNOT00000060150 3 1 1 61 10 15306249 15306267 ACAAGTGACTCTGTTTCCC 57 15306206 15306224 TCTTTAGTCCCTCCAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361952 ENSRNOG00000038376 ENSRNOT00000058437 2 1 1 92 4 93959191 93959589 TGGATTCAGGGAACCAGTG 59 93959645 93959663 CTTGCAAGAGATGGAGGCT 60 NA Rattus norvegicus 81 Iffo1 ENSRNOG00000018533 ENSRNOT00000048379 2 1 1 80 4 157666858 157666879 TGATCAAAGATACTGAGTCCCT 59 157666920 157673510 CCAGCTCCAGCTCTATCTG 59 NA Rattus norvegicus 81 Mfsd11 ENSRNOG00000000247 ENSRNOT00000000264 3 1 1 81 10 105803881 105804160 ACCCAGATTTCAGAGAATGAC 58 105804203 105804221 GAAAGAACAGAACGGTCCC 59 NA Rattus norvegicus 81 Sbf1 ENSRNOG00000008392 ENSRNOT00000072955 1 1 1 80 7 130281133 130281233 TGTTCAGGAATAGCCTTGGT 59 130281072 130281092 GATTCCCAATCACATTCTCCA 58 NA Rattus norvegicus 81 Olr964 ENSRNOG00000047818 ENSRNOT00000061633 3 1 1 60 7 6936582 6936606 GATCTTCATCTTTCTCTTCATCACC 60 6936546 6936564 GATGATGGTCACGTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx7 ENSRNOG00000009751 ENSRNOT00000013913 3 1 1 93 5 128004815 128004834 ACCTACAGTGTCTCTTTCCC 59 128002334 128004760 TCCCAGAAGTTTGGGTTAGG 59 NA Rattus norvegicus 81 Adssl1 ENSRNOG00000046763 ENSRNOT00000073796 2 1 1 80 6 137203484 137203504 CTGAGCGAGATTAAAGTTGGT 59 137203544 137204934 CAATATCTCCTGGTTAGCAGG 58 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697,ENSRNOT00000057216 2 2 2 80 5 128891144 128892156 AAATGTCAACAAGGTGGGAG 58 128892198 128892217 ATCTCTGGGTGAATCCACTC 59 NA Rattus norvegicus 81 Olr1607 ENSRNOG00000006746 ENSRNOT00000008805 2 1 1 60 15 12363523 12363541 AGACCCTCATCTTCACACC 59 12363565 12363583 CATGTCGATGATGGAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr937 ENSRNOG00000049098 ENSRNOT00000050023 3 1 1 60 7 8809862 8809883 ACATCAAACCATCTTCAGAGGA 60 8809823 8809842 AGAGTGAGTATGGCAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363779 ENSRNOG00000048062 ENSRNOT00000067437 3 1 1 113 6 142585052 142585151 CAGCTACATGTGTCCACTC 58 142584957 142584975 TACTGGTGAAGGTGTAGCC 59 NA Rattus norvegicus 81 Dhx15 ENSRNOG00000003844 ENSRNOT00000005126 1 1 1 80 14 61145631 61154758 CCATTCTTAAGTATATGACTGACGG 59 61154794 61154814 TTATCACACCATAACGCTCCA 60 NA Rattus norvegicus 81 Gpat2 ENSRNOG00000013906 ENSRNOT00000018677 1 1 1 80 3 119999702 119999720 CAATGCTCGAAGTTGCTGG 60 119999761 120000022 ACAACACTACATTCACCTAGCA 60 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240,ENSRNOT00000082970 2 2 2 80 X 128617016 128617035 TCAGAAGGAAGGATTGAGGA 58 128617076 128618591 TCTATTCTTTGATGGTGGCAG 58 NA Rattus norvegicus 81 Fam102a ENSRNOG00000050834 ENSRNOT00000073087 2 1 1 80 3 11582801 11582819 CGCAGATGACATTGTGGAG 59 11582862 11582971 AGCCGAAGGTTACTATCCTC 59 NA Rattus norvegicus 81 Ythdc2 ENSRNOG00000039241 ENSRNOT00000060098 3 1 1 80 1 182112392 182112410 GCTGAAACAAGCATCACTG 58 182109054 182112350 CAGTGCATCAAAGGATTTCTC 58 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000078944 3 1 2 93 1 216661986 216662516 TCTCATCTCTGACTTCTTCGC 60 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 3 2 2 80 7 142461393 142462683 ACAGCTTCAGATGTGACCC 60 142462726 142462745 TTATGCTGAGAGCCTTCCAG 60 NA Rattus norvegicus 81 Agbl4 ENSRNOG00000033097 ENSRNOT00000044795 2 1 1 80 5 130293084 130293102 TCCAACTGGTTACTCTGGA 58 130293146 130300352 GAAGAATGCAAGAGTTCGC 57 NA Rattus norvegicus 81 LOC683745 ENSRNOG00000021575 ENSRNOT00000060160 3 1 1 80 13 56650337 56650356 TTCCAAATGGTCAAGACACG 59 56646775 56650296 GCACATCACACGATTTAATGC 59 NA Rattus norvegicus 81 Noc2l ENSRNOG00000021392 ENSRNOT00000066561 3 1 1 80 5 173672012 173672281 TTCAGAGGATGGAGACACAG 59 173672324 173672342 TCTAGCTCATCCTGTGGTC 58 NA Rattus norvegicus 81 LOC100911449 ENSRNOG00000048133 ENSRNOT00000060987 3 1 1 60 10 12100718 12100739 GAGCTGATGATTCTTACAGAGG 59 12100760 12100778 TGAGGATGCAGACAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3b ENSRNOG00000008001 ENSRNOT00000010645 2 1 1 83 5 128557931 128557955 GGGAATAAATGTGATATGGAAGAGG 60 128557995 128567620 GAAGTCAAACCCAAGTTGCT 59 NA Rattus norvegicus 81 Rn60_10_0698.9 ENSRNOG00000051182 ENSRNOT00000076370 2 1 1 60 10 70075566 70075585 GATTGGTGAAGTCCTAGGCA 60 70075608 70075626 GGACCACATAAGCAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol12 ENSRNOG00000010209 ENSRNOT00000013764 2 1 1 82 7 120163905 120164374 GAGAGGAGGCACTAGAGGA 60 120164420 120164438 ATTGGGATGGTCGTACTGC 60 NA Rattus norvegicus 81 Gp1bb ENSRNOG00000046981 ENSRNOT00000040954 2 1 1 200 11 86521035 86521053 AGTAGGCCTCCATCCTCTC 60 86521447 86521466 AATTCTGTAGTGTCGGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Itpkc ENSRNOG00000013945 ENSRNOT00000018696 3 1 1 80 1 84024716 84025281 GTTGGAATCCTAAGAAAGTACGTG 60 84024659 84024677 GTGGGTCTTGAAGAAGGGA 59 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 2 2 2 80 2 199841203 199843605 CTGTCCATTAAGGACAGTGTG 59 199843647 199843665 CTTATACAGCAGCGTGGTG 59 NA Rattus norvegicus 81 Pln ENSRNOG00000000413 ENSRNOT00000000469 2 1 1 160 20 34633205 34633224 ATTGTGACGATCACAGAAGC 59 34640840 34640859 GAGCGAGTAAGGTATTGGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Serinc1 ENSRNOG00000029360 ENSRNOT00000001066 3 1 1 80 20 38969688 38969709 CTCCTTCTTTCACTTCATGCTC 59 38967459 38969648 GAAGGCTCATACCTGTACCA 59 NA Rattus norvegicus 81 Nlrp6 ENSRNOG00000014685 ENSRNOT00000019808 3 1 1 80 1 213689109 213689873 GCTGAAGGGTTCTCAAAGC 59 213689917 213689935 TGCTGGGTAATCATTGCCT 59 NA Rattus norvegicus 81 Akt1 ENSRNOG00000028629 ENSRNOT00000031164 2 1 1 80 6 137222395 137222415 TCAAGTACTCATTCCAGACCC 59 137222065 137222353 ACAGGTGGAAGAAGAGCTC 59 NA Rattus norvegicus 81 Cml3 ENSRNOG00000015763 ENSRNOT00000021103 1 1 1 60 4 117490502 117490520 CTTACCCTCCTTGTTTCCC 57 117490460 117490478 TTGCCGTATACTTCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cml3 ENSRNOG00000015763 ENSRNOT00000021103 3 1 1 60 4 117490501 117490519 TTACCCTCCTTGTTTCCCT 58 117490459 117490478 ATTGCCGTATACTTCTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bysl ENSRNOG00000049121 ENSRNOT00000075630 1 1 1 80 9 15401728 15401746 ACAAACGACTCAACTTCCA 57 15401789 15401971 TCAGGATTCCTTTGAACCAG 58 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 3 2 2 80 10 107310289 107310308 AGAACATCCAATGTCCTGAC 58 107307916 107310246 ATAGCCAACATCCTTGGTG 58 NA Rattus norvegicus 81 Elf4 ENSRNOG00000005352 ENSRNOT00000044487 1 1 1 80 X 135247515 135250458 ATATCCACCAGCTGGAAGAC 59 135247454 135247478 ACAGATGTACTAATTCAGGATAGGG 60 NA Rattus norvegicus 81 Pcsk6 ENSRNOG00000011526 ENSRNOT00000015845 3 1 1 80 1 126821852 126821870 GCAAGCTACGATGTCAACG 60 126821912 126824174 GCGAGTACCATGTTTGTTCTC 60 NA Rattus norvegicus 81 Plekhh3 ENSRNOG00000020238 ENSRNOT00000027452 3 1 1 81 10 89077312 89077330 AGCTAATAGGCCCTCACAC 59 89076830 89077267 ATGATCTCTTCCACCTGGG 59 NA Rattus norvegicus 81 Gclc ENSRNOG00000006302 ENSRNOT00000033196 1 1 1 80 8 85059198 85059217 CAGTTCCTGCACATCTACCA 60 85059259 85078557 CAACATGTACTCCACCTCGT 60 NA Rattus norvegicus 81 Zfp280c ENSRNOG00000006797 ENSRNOT00000044435 2 1 1 80 X 135406503 135411277 CAGACTGTGTCTAAACCTACCT 59 135406444 135406463 TGAGTCTAACAGTGAGGCAG 59 NA Rattus norvegicus 81 Stk11 ENSRNOG00000014287 ENSRNOT00000060683 2 1 1 80 7 12445746 12445764 GATTGCCAATGGACTGGAC 59 12445402 12445704 GTGGTGATGTTGTAGAGTGTG 59 NA Rattus norvegicus 81 Hivep2 ENSRNOG00000011015 ENSRNOT00000015131 1 1 1 80 1 8326310 8326330 ATACCATAACCCACCATTACC 57 8326370 8331428 CCTCTTCTTAGATTAGGAGGC 57 NA Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 1 1 1 64 11 87222292 87235307 CACATCTCTGGAGCTGAGG 60 87222246 87222264 TTCTCACCCATGAAGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 2 1 1 65 11 87222292 87235307 CACATCTCTGGAGCTGAGG 60 87222245 87222263 CTTCTCACCCATGAAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Aaed1 ENSRNOG00000018886 ENSRNOT00000066230 1 1 1 81 17 1827471 1829556 TCCTCCAAGAAGCAGATGTC 60 1827269 1827288 CCAGTCAGTTTGCAGAAAGG 60 NA Rattus norvegicus 81 Vom2r80 ENSRNOG00000055298 ENSRNOT00000086274 3 1 1 80 1 65115389 65196406 GAAGTACACAGATGCCAACC 59 65196448 65196467 CTGGCATTCCATTCTTCCAG 59 NA Rattus norvegicus 81 LOC100910863 ENSRNOG00000046807 ENSRNOT00000072782 2 1 1 60 4 1364414 1364432 TCTTCAGGTAAGGGTTGGT 58 1364456 1364474 TAGCAGTGATGATGTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910863 ENSRNOG00000046807 ENSRNOT00000072782 3 1 1 60 4 1364414 1364432 TCTTCAGGTAAGGGTTGGT 58 1364455 1364474 TAGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cltb ENSRNOG00000017506 ENSRNOT00000023651 1 1 1 81 17 10551569 10554566 TACCATTGGCTATGTGGCA 59 10554611 10554629 CACCTTCTCCCACTCTGTG 60 NA Rattus norvegicus 81 Pyurfl1 ENSRNOG00000006858 ENSRNOT00000008973 2 1 1 94 4 88584520 88585702 CCGCTTAGATATGATGCATCG 59 88585755 88585776 TGTGGTATCATATTAGGGACCC 59 NA Rattus norvegicus 81 LOC100363232 ENSRNOG00000033165 ENSRNOT00000050837 3 1 1 60 5 126691273 126691291 CTGTCAGGACCTTCATCAC 58 126691231 126691251 TGATGGAATACTTGCCAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bst1 ENSRNOG00000003064 ENSRNOT00000004094 1 1 1 81 14 71812068 71812086 TGTGACGTTCTGTATGGCA 59 71811392 71812025 AGGACTGGTAATCAAGTCCAG 59 NA Rattus norvegicus 81 Ctsj ENSRNOG00000046476 ENSRNOT00000038758 3 1 1 80 17 4106780 4106948 CCTTTGCTGATACAACTGGTG 60 4106990 4107008 CACTTGGGTTTGTCACAGC 60 NA Rattus norvegicus 81 P4ha1 ENSRNOG00000050655 ENSRNOT00000070897 1 1 1 80 20 28970268 28970288 CAGTGGAGAAGGAGATTACAG 58 28970330 28971630 AGCCATTTGTTGGATACCC 58 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539 3 2 3 81 4 164449584 164449604 GCTCACTGTGATTGCTATTGG 60 164446014 164449543 AACACAACCACTGTTTGTCAC 60 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888,ENSRNOT00000057095,ENSRNOT00000051385 3 3 3 80 5 134498863 134498884 TCCTTAATGACCCTAGACACTG 59 134498922 134499370 GCTCTTGTAATTTCCATCCACC 60 NA Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 1 1 1 60 1 198528682 198529118 GTCACCCATGCTCAATAAGC 59 198529141 198529159 TATCTTCCTGCTTCCCGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ly49s2 ENSRNOG00000053772 ENSRNOT00000090110 1 1 1 80 4 164399252 164399270 GGAGTGGATGTACCCAGAC 59 164396885 164399211 GAAGGAACATCAGTTCATCCTC 59 NA Rattus norvegicus 81 Tac3 ENSRNOG00000004229 ENSRNOT00000005679 3 1 1 89 7 71027179 71027800 CCACAGAAACGTGACATGC 60 71028178 71028196 CTCTTCAACCACATCAGCG 59 NA Rattus norvegicus 81 Capn9 ENSRNOG00000018480 ENSRNOT00000025357 3 1 1 80 19 57356115 57356134 CACCAGAGGATTTCTACGAG 58 57356175 57357312 CATTCAGGGTATCTATGGAGC 58 NA Rattus norvegicus 81 Mrvi1 ENSRNOG00000017767 ENSRNOT00000024060 3 1 1 80 1 175689915 175691074 GCCTACAACAAAGGATACCAG 59 175689855 175689874 CTTCTGTTCCTCTTCCTCCT 59 NA Rattus norvegicus 81 Ccdc54 ENSRNOG00000028005 ENSRNOT00000035340 1 1 1 60 11 52828634 52828653 CTTACAACCTGAAACCACGA 58 52828676 52828694 TGCTGAAGAGATGACGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faah ENSRNOG00000045949 ENSRNOT00000015667 2 1 1 80 5 134856905 134856924 CCTTTCTCAACAGTATGCGT 58 134855713 134856170 CAGACTGGCGATACATCTC 58 NA Rattus norvegicus 81 Mt4 ENSRNOG00000019004 ENSRNOT00000025694 2 1 1 61 19 11340569 11341810 GTATGTCTGGAGGGATCTGC 60 11340527 11340545 TTTACAGCTGCAGGTTGTG 59 NA DesignRelaxed Rattus norvegicus 81 Ccr2 ENSRNOG00000059979 ENSRNOT00000078529 1 1 1 62 8 133195392 133195410 TGAACTTGAATCGTCTGCA 57 133197034 133197058 CTGAGGTAACATATTACTGTCTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139,ENSRNOT00000007119 3 2 2 116 4 166211717 166211735 TGAGCTATGCTCAGGAACC 59 166213872 166213890 CTTGTTGGTTTCCAGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Arv1 ENSRNOG00000018909 ENSRNOT00000025695 3 1 1 92 19 57484851 57484869 CGTTGTATCGAGTGCAACC 59 57484925 57487393 TTTCTGGCAGGATTTGCAG 59 NA Rattus norvegicus 81 Tial1 ENSRNOG00000020271 ENSRNOT00000027463 3 1 1 80 1 199847490 199847511 TGTAGTAAACCAGTCAAGTCCA 59 199847321 199847452 CTCATAAGTTGATCTGTCAGCC 59 NA Rattus norvegicus 81 Wdr91 ENSRNOG00000010421 ENSRNOT00000014010 1 1 1 80 4 62435051 62435070 CTGAACTTTGATGCGGAGTG 60 62433725 62435009 CAGTGCAAAGAGCTTCTGAC 60 NA Rattus norvegicus 81 Mir138-2 ENSRNOG00000035643 ENSRNOT00000053766 2 1 1 63 19 11149801 11149819 CTGGTGTTGTGAATCAGGC 59 11149756 11149774 CCTGGTGTCGTGAAATAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl2 ENSRNOG00000014702 ENSRNOT00000019756 1 1 1 80 17 21414650 21414669 CATGTCTATCACCATGCGTC 59 21414712 21417092 TCCGAAGAAGCTTTGACCA 59 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000045150 3 1 2 81 18 17496903 17549976 CACAGGAACAGCAGATAACC 59 17550018 17550038 GCTACACTCAGATAGGAACCA 59 NA Rattus norvegicus 81 AABR07044412.1 ENSRNOG00000061483 ENSRNOT00000082437 1 1 1 97 20 4957049 4957067 CAATCGTAGGTGACCTTCG 58 4956966 4956987 GTTGGTGATGACTTTGTTGG 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000001869 1 1 3 80 12 21745298 21745320 CCGTAGTCAATTCAGTTTCTACG 60 21740529 21745262 TCATAGAAGACTTCCACCTACAC 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000001869 2 1 3 81 12 21745298 21745319 CGTAGTCAATTCAGTTTCTACG 57 21740527 21745258 ACTCATAGAAGACTTCCACCT 58 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 3 2 2 80 5 4425411 4425430 CAATGCCACTTACCAACTCC 59 4425472 4447456 GTACTGTACTCTGCTGTGGG 60 NA Rattus norvegicus 81 Wfdc18 ENSRNOG00000037097 ENSRNOT00000055923 2 1 1 66 10 71008759 71008780 GGGAATGAACATTACCTATGCT 58 71009424 71009442 CTTGGGACACTTTCCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Alyref ENSRNOG00000036687 ENSRNOT00000054955 3 1 1 80 10 109772427 109772447 CAGATGTACACTTTGAACGGA 58 109772174 109772385 TGTAGCTTGCATCCAAAGG 58 NA Rattus norvegicus 81 Sh2d6 ENSRNOG00000013605 ENSRNOT00000018251 2 1 1 80 4 100377672 100378367 CCCGTCTTATTCTCAAGAAACC 59 100377277 100377295 GAGACCTAGTCAAGGCTGG 59 NA Rattus norvegicus 81 Tvp23b ENSRNOG00000050649 ENSRNOT00000074853 1 1 1 80 10 49302632 49304115 GGCAGTGAAGAATGTCACC 59 49304159 49304177 CAGTGGCTCTTTCCATCCT 59 NA Rattus norvegicus 81 Tvp23b ENSRNOG00000050649 ENSRNOT00000074853 2 1 1 80 10 49301389 49302503 ATCCAGAATCAGACACCCG 59 49302547 49302565 TCGCAGAGGAGATAGACCA 60 NA Rattus norvegicus 81 Il2 ENSRNOG00000017348 ENSRNOT00000023327 1 1 1 81 2 123851748 123851766 CCCTGCAAAGGAAACACAG 59 123851600 123851708 CTTGTAATTATCGATCCCTCTCAG 59 NA Rattus norvegicus 81 Rgs18 ENSRNOG00000003959 ENSRNOT00000005324 2 1 1 82 13 61590536 61590554 CTTCTCCTACAGAGGCCTG 59 61589790 61590493 GAGGAGACTCTTGTTTCTTTGG 59 NA Rattus norvegicus 81 LOC100910721 ENSRNOG00000057877 ENSRNOT00000073744 2 1 1 60 19 9024808 9024827 CACAAGAAGATCCTGGAGAG 57 9024849 9024868 ATTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq7 ENSRNOG00000017012 ENSRNOT00000022988 3 1 1 80 1 188178476 188178494 ACTACAACAACCAGATCCG 57 188176866 188178433 GAAACTGCTTAATGACCTGC 58 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 3 2 2 83 2 95021080 95025900 CGGGAACTTACTAAGGTGGA 59 95025946 95025964 CTTGATCTCCGCAAGATGC 59 NA Rattus norvegicus 81 Fancc ENSRNOG00000016889 ENSRNOT00000022884 3 1 1 80 17 920149 920168 CACTTGTCTTCACTTGTCCC 59 917596 920108 ATTGCATCAGAATCCATCTCC 58 NA Rattus norvegicus 81 Rn60_X_0721.2 ENSRNOG00000051161 ENSRNOT00000076649 2 1 1 61 X 71141518 71141536 GACAGCTGGAGTAAGTCCC 60 71141558 71141579 GCAATTCTCCAGAACAAATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 2 2 2 83 10 49561858 49567298 CAAATCCTTGCTGGTCTGTG 60 49567343 49567362 GTAGTCGTTGTTGACATGCC 60 NA Rattus norvegicus 81 Ppp1r3c ENSRNOG00000018494 ENSRNOT00000024941 1 1 1 60 1 255374438 255374457 ACGACCTTTGACAAGTTCAG 59 255374397 255374415 ATGTGCCAAGCAAATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plk1 ENSRNOG00000018815 ENSRNOT00000025629 2 1 1 80 1 192124986 192125005 CAGTACATAGAGCGTGATGG 58 192125044 192125163 GAGAGTGATCTTCTTCATCAAGG 59 NA Rattus norvegicus 81 Prkcz ENSRNOG00000015480 ENSRNOT00000021285 3 1 1 80 5 172693301 172694563 CAGGAGGCATATGGATTCTG 58 172693240 172693259 TCTGAAGGAAGGTCTACACC 59 NA Rattus norvegicus 81 Cdk20 ENSRNOG00000017991 ENSRNOT00000024466 1 1 1 80 17 1936848 1939165 CGAGGACAGTCAATATGTGG 58 1939207 1939226 AGCATAAACTCGAAAGCCAG 59 NA Rattus norvegicus 81 Kat2a ENSRNOG00000018364 ENSRNOT00000055250 3 1 1 80 10 88617703 88617808 AGGTCAATTATACCAGATGGC 58 88617643 88617661 CATGGGTGGTCTCATATCG 58 NA Rattus norvegicus 81 Auh ENSRNOG00000011684 ENSRNOT00000015786 3 1 1 81 17 12341798 12341816 GAGCCAAGATGCATTCCAG 59 12341860 12351047 ACAGGAAGGTTAGCGATGTC 60 NA Rattus norvegicus 81 Rn60_10_0700.3 ENSRNOG00000014534 ENSRNOT00000019503 2 1 1 60 10 70329433 70329451 CCCGTGTTTGTGATAGGTG 59 70329474 70329493 TGCTGACAATCTTGAGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4a1 ENSRNOG00000042139 ENSRNOT00000029072 1 1 1 80 4 155948292 155949680 ATTCAATCAGAATGCCACATCC 60 155948233 155948254 GGATGGTAACTTAGCACAACAC 60 NA Rattus norvegicus 81 Ptgfrn ENSRNOG00000015655 ENSRNOT00000021162 1 1 1 80 2 203464467 203464487 TACAAGTGTTCAACTCCAAGC 59 203461736 203464425 ATCTGCCAGCACTTTAACC 58 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000044511 3 1 3 80 1 199061458 199061610 AATGTTCACAGAGGTGCTG 58 199061396 199061414 TCCCAAGATGATCTCCTCC 58 NA Rattus norvegicus 81 AABR07009572.1 ENSRNOG00000013038 ENSRNOT00000049719 1 1 1 60 2 103751125 103751144 GGCTAAGAATTGGGTGAAGG 59 103751166 103751185 TAGTGCAATGACGATGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083,ENSRNOT00000057872 3 2 2 80 20 27064581 27064599 TGGCCACTTGATGGTACAG 60 27064642 27065961 ATTCTGGACCTTCCTCTGTG 59 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 2 2 2 80 13 67114733 67114752 GAAGGCGCTCTATGAATCAG 59 67107445 67114692 GTTGACATGTACCATGTGGAG 59 NA Rattus norvegicus 81 Cnpy3 ENSRNOG00000016315 ENSRNOT00000021868 2 1 1 80 9 16547664 16547682 TGATTGACACAGGCTACGG 60 16547722 16552910 CTTCAATTAACCGTAAGTCCGAC 60 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000080590,ENSRNOT00000060327 3 3 7 81 20 4087729 4087747 GTTGCTAACAGTGCTGAGC 60 4091566 4091587 ACACTCGGATTTATACTGTTCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC499240 ENSRNOG00000013713 ENSRNOT00000055158 1 1 1 228 1 174344704 174344723 TTCCAGAGGATGTCATTCAG 57 174339417 174343032 TTTAACTTCCTGACCCTGTC 57 NA DesignRelaxed Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 2 3 3 80 X 71185499 71185518 CTTACTTGCCGAATTCTCCT 58 71185561 71185674 AACGGTAGGTTTGTTTCCA 57 NA Rattus norvegicus 81 Tmem179b ENSRNOG00000019341 ENSRNOT00000065694 1 1 1 84 1 224972563 224972778 CCTACACAATGCTGAAACCTC 59 224972499 224972517 AAACTTGCACTGCATGACC 59 NA Rattus norvegicus 81 RGD1559489 ENSRNOG00000038174 ENSRNOT00000031284 2 1 1 99 7 65720075 65720093 ATTACATCTCCAGAGGCCG 59 65720156 65720236 AGCTGATGATTCTGGTGCA 59 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 3 2 2 80 4 57940124 57940566 TCATAGCATGAATCGCTTGTG 59 57940608 57940626 TTCCTGTTGAGGTCCACAC 60 NA Rattus norvegicus 81 Sike1 ENSRNOG00000017502 ENSRNOT00000024270 3 1 1 83 2 205490158 205491282 CACTCTGCAGAAATTGAAAGTC 58 205491326 205491344 GTTATCGTCCACCTGAACC 58 NA Rattus norvegicus 81 Grin2c ENSRNOG00000003280 ENSRNOT00000004477 2 1 1 86 10 103805333 103805351 GACTTGTACCTGGTGACCA 59 103805019 103805284 CCGCTTGTAGTATACCTCCC 60 NA Rattus norvegicus 81 Ddx52 ENSRNOG00000002612 ENSRNOT00000003600 3 1 1 80 10 71266516 71266535 CATATGACGTTGAGCAGTGG 59 71266577 71267644 CAACTGCAGAATTCCTTGCT 59 NA Rattus norvegicus 81 Palm ENSRNOG00000009760 ENSRNOT00000013762 1 1 1 80 7 12720095 12720113 CATGAGGAAGCAGATGCAG 59 12718295 12720054 TCAATTTCTTTCTCGAGTCTGG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 1 9 18 60 1 43508712 43508731 CAGAACACTAGGGAACATCC 58 43508754 43527500 CTAGCTGGTGGTTAGTTCG 58 NA DesignNoJunction Rattus norvegicus 81 Pp2d1 ENSRNOG00000004719 ENSRNOT00000006325 3 1 1 80 14 72958060 72958078 TAACAGCTCTCCCTTCCAG 58 72950482 72958017 ACTGCTTGTACATTTCCAGC 59 NA Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 2 2 2 80 18 25649071 25650398 CACAATTTGCTGCTGAGGA 59 25650441 25650460 TTGAGCAAGACAGCTTACCT 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 3 3 3 80 7 12665244 12665343 AAGTTCTTCCAGAAGGACCG 60 12665183 12665201 CAGCTCAATTAGTGCCTGC 59 NA Rattus norvegicus 81 LOC100911859 ENSRNOG00000016141 ENSRNOT00000021589 3 1 1 114 7 144566002 144566020 AGAACACGAATCCCAGCTC 60 144567371 144567390 AATTTCGAATAAGGGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Meox1 ENSRNOG00000020803 ENSRNOT00000028220 2 1 1 80 10 89799766 89799785 ATAACTACCTGACCAGGCTC 59 89798227 89799723 GGAACCACACTTTGACCTG 59 NA Rattus norvegicus 81 Spata6 ENSRNOG00000007568 ENSRNOT00000010524 2 1 1 80 5 131781400 131781419 TTCAGCACCTTCAACAACTC 59 131781460 131787660 TCAGAATGGAATCTTTCCCTG 58 NA Rattus norvegicus 81 Alox12b ENSRNOG00000022210 ENSRNOT00000039535 2 1 1 80 10 55752783 55752982 CCTGTATAAGCTCCTCATTCC 58 55753024 55753042 CCTTTGTTGAGAAGGAGGG 58 NA Rattus norvegicus 81 Runx3 ENSRNOG00000054217 ENSRNOT00000086650 2 1 1 61 5 153526878 153530612 AATCCAAGGCTCCTCAGAC 59 153530637 153530655 GGAAGGAGCGATCAAACTG 59 NA DesignRelaxed Rattus norvegicus 81 Bzw2 ENSRNOG00000005096 ENSRNOT00000007414 3 1 1 80 6 55606884 55610594 CTTAGTCAAAGAAGGCATCGC 60 55606824 55606845 ACAGAATTGGCATCTTTCTCTG 59 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 3 1 1 61 10 54246613 54250714 GTGTTGGAGATCGTCATGG 58 54250739 54250757 GGGAGGTTCTTCACATCCT 59 NA DesignNoJunction Rattus norvegicus 81 Ecscr ENSRNOG00000039593 ENSRNOT00000072580 1 1 1 80 18 28516106 28516126 CAGCAATCCTCAGTTTACTCC 59 28511365 28512502 TCTGTAGAATTTCCTGAGAGGT 58 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 1 2 2 63 1 90961116 90961138 CTCTAATCTACTATGTCCCTGAC 57 90959613 90961094 ACCTGTCGAAGCAAATACTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912291 ENSRNOG00000047310 ENSRNOT00000074957 3 1 1 80 5 2656418 2656438 AAGTTCATCTCCATTAGAGGC 58 2656477 2661724 TTGGTCTTCTTTATCCTGATCG 58 NA Rattus norvegicus 81 Elp5 ENSRNOG00000027628 ENSRNOT00000032481 2 1 1 83 10 56580498 56581959 AACTTACCAGACTTGGTGGT 59 56580434 56580452 TGTAGCTCAGAATGGAGGG 59 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000032605 ENSRNOT00000046799 1 1 1 60 6 145777501 145777519 TGTCAAGGAGCTGGAAGTG 60 145777459 145777477 GTGAGCAATCTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl32 ENSRNOG00000032605 ENSRNOT00000046799 2 1 1 60 6 145777654 145777672 AATTAAGCGAAACTGGCGG 59 145777612 145777630 CTTGAATCTTCTCCGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561919 ENSRNOG00000033451 ENSRNOT00000047417 1 1 1 60 19 14093444 14093462 CCACGACAGTACAAGATCC 58 14093483 14093504 TCCCATCCTTCATATCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 1 3 3 80 1 233134989 233135009 TCAGTCCTTGACTACAAAGTG 58 233129801 233134947 GTCCATGACGTAGATGCTG 58 NA Rattus norvegicus 81 Arl6ip1 ENSRNOG00000017751 ENSRNOT00000024648 2 1 1 82 1 187777007 187777025 CTGACAAAGTCCTTCGGTG 59 187776497 187776964 ATAGATAATCAGGAACAGCAGG 58 NA Rattus norvegicus 81 Slc38a6 ENSRNOG00000022622 ENSRNOT00000029328 1 1 1 80 6 96194124 96194142 CTTCGCCTTTGGATTACCT 58 96198195 96209282 AGGTAAGATGACATAGCTCCA 58 NA Rattus norvegicus 81 Heatr6 ENSRNOG00000002542 ENSRNOT00000003492 3 1 1 80 10 71059224 71060099 AACTTATGTCTCAGTGTGCC 58 71060141 71060160 AATGGTCAAGAAAGCTTGGA 58 NA Rattus norvegicus 81 Cacng8 ENSRNOG00000057848 ENSRNOT00000078444 2 1 1 105 1 64333673 64334477 GTACCTGCTCCGAGTAGTC 59 64333586 64333604 GGATTTGTAGACGCGAGAG 58 NA Rattus norvegicus 81 Limch1 ENSRNOG00000002318 ENSRNOT00000064263 2 1 1 80 14 42780077 42780096 CTATTTCCTCGAGTTCTGCC 58 42779022 42780036 AGTCCATCTTATTCCTTGTCC 57 NA Rattus norvegicus 81 Rgs21 ENSRNOG00000056369 ENSRNOT00000086610 3 1 1 94 13 61303253 61306762 TAGCTAACCAAGCTGGACTG 60 61303178 61303196 GAAGTCTTCACAGGCAAGC 59 NA Rattus norvegicus 81 Zdhhc17 ENSRNOG00000003803 ENSRNOT00000005078 1 1 1 80 7 53676371 53676995 CAGCTTATAGAACACATAGTGTGG 59 53676314 53676337 GATACTTGTCACCAAGGTTAACTG 60 NA Rattus norvegicus 81 Neil3 ENSRNOG00000011688 ENSRNOT00000015623 3 1 1 80 16 41102755 41102774 GATGTGTTTACAGTGGTGTG 57 41102815 41116963 CGAAATGAATCCGTAAAGCTC 58 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000027344 1 1 2 80 1 215536574 215536594 CATCTTCAACTTCGTCTACCT 58 215522199 215536533 TTCTTGTCCCGAACTTTGAG 58 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 3 1 1 61 7 122456931 122458215 GATAATCTCACATTGCCGGG 59 122458236 122458257 ATGATGTTGATGTAGGAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 Sh3bgrl3 ENSRNOG00000015967 ENSRNOT00000021734 3 1 1 81 5 152357946 152358475 GGCTCTCGTGAAATCAAGTC 59 152357884 152357903 TGTCCACTAGCTGGTATTGG 59 NA Rattus norvegicus 81 Rbpj ENSRNOG00000007797 ENSRNOT00000010277 3 1 1 88 5 4878667 4878685 GACTTGTGCATTGCCTCAG 60 4878735 4878757 CCTCCTTCTACCAGGTATCTG 59 NA Rattus norvegicus 81 LOC100909954 ENSRNOG00000048986 ENSRNOT00000075676 3 1 1 61 6 129320574 129320592 GATTGCCATCATAGCCACG 59 129320617 129320635 AGGTGAAGGCATACACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hid1 ENSRNOG00000003464 ENSRNOT00000004718 2 1 1 80 10 103907020 103907840 TTCATCGTGAAGAGGACTTCC 60 103906960 103906978 GAAGGTAGGTCTGGAGCAG 59 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 1 2 2 89 9 16959236 16962133 AGCAGAAGGTTATTGAGGAG 57 16959166 16959184 GCTCCAACTCAGTTCTGAG 58 NA Rattus norvegicus 81 Ifna16l1 ENSRNOG00000033602 ENSRNOT00000040254 2 1 1 60 5 107447534 107447555 CCTCATACTCATAACCTCAGGA 59 107447495 107447513 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat4c ENSRNOG00000004149 ENSRNOT00000005523 3 1 1 80 7 44009298 44018005 CTATGTTCTGGAAGGCGAC 58 44018046 44018067 AAGGTATGAACATAGCGTTCAG 59 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 3 2 2 81 10 88283938 88283956 CTCTTCAAGCATGACCCAG 58 88282227 88282429 CATCCATGTCATCTGCATAGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 2 2 2 80 9 17821055 17821075 TCAAATTGTATGTCCGTCGTG 59 17821117 17821274 CACCACGGATGAAGTTGAG 59 NA Rattus norvegicus 81 Akap8 ENSRNOG00000006559 ENSRNOT00000008827 1 1 1 80 7 14328446 14329403 CATTCAAAGGGATTGGCCAG 60 14328385 14328404 CAGGAATCAGCATGTCACAG 59 NA Rattus norvegicus 81 Zfp653 ENSRNOG00000014065 ENSRNOT00000018874 3 1 1 81 8 23079056 23079074 GACATCGCTACTTCCAGGA 59 23069644 23079011 CCATTGCCCACTTTGTCAC 60 NA Rattus norvegicus 81 Pdc ENSRNOG00000002517 ENSRNOT00000003405 2 1 1 80 13 67555505 67555524 GATCCTCAGACAAATGTCCT 57 67555566 67557633 TGAATGCTCATCTTTCTGCT 58 NA Rattus norvegicus 81 Pnliprp2 ENSRNOG00000017982 ENSRNOT00000068119 1 1 1 80 1 279925600 279925619 TGATAAATCTCTTCCGGCCC 60 279925660 279927529 AGAAGTTGTACTCTTTCCCGT 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377,ENSRNOT00000086349 3 2 2 80 1 174430132 174430153 TTGAAGACATAGTCCGAGATGG 60 174428833 174430097 CCTTGATCAGTTTCTTATCCTTCAG 60 NA Rattus norvegicus 81 Ppap2c ENSRNOG00000000177 ENSRNOT00000000193 1 1 1 80 7 13065273 13065407 TGTCGTCCTTGTCTCATCG 60 13065448 13065469 ACATAGTTGTTGAAGTCAGAGC 59 NA Rattus norvegicus 81 Ppap2c ENSRNOG00000000177 ENSRNOT00000000193 3 1 1 82 7 13065273 13065407 TGTCGTCCTTGTCTCATCG 60 13065449 13065471 CCACATAGTTGTTGAAGTCAGAG 60 NA Rattus norvegicus 81 Ctf2 ENSRNOG00000030907 ENSRNOT00000041840 3 1 1 102 1 199169469 199173867 AGACCTATCTCCAGTACCAG 57 199169386 199169404 GTCTTGAAGGAGACAGCTG 58 NA Rattus norvegicus 81 Cplx4 ENSRNOG00000016928 ENSRNOT00000022718 3 1 1 80 18 61657433 61669854 CTTCCGAAGAGTGAAATGGA 58 61657372 61657390 CATCTTTCGGAGATCCTCG 58 NA Rattus norvegicus 81 Tspan2 ENSRNOG00000023338 ENSRNOT00000035605 2 1 1 80 2 205186060 205186080 CTACAGCGATTACGTTAGGGA 60 205186121 205187621 TTTCCACAGCACTGAAATGC 60 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216,ENSRNOT00000067281,ENSRNOT00000078274,ENSRNOT00000064755 3 4 4 80 5 58707770 58708283 GGTTTGCTAAGACCATCGG 59 58708327 58708345 CCTTTGTGCAGTAAGCTGG 59 NA Rattus norvegicus 81 LOC498675 ENSRNOG00000046155 ENSRNOT00000075271 2 1 1 82 8 117171347 117171365 ATTCTGGCACGTGAAAGAC 59 117171407 117172955 TCCATACCCTTCCTTAAACTCTC 59 NA Rattus norvegicus 81 Stx18 ENSRNOG00000006139 ENSRNOT00000008410 2 1 1 80 14 77428719 77440807 GTACATTAATGCCTACAGCCAC 60 77428660 77428679 GCATCCTGGTCTATCTGGTC 60 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366,ENSRNOT00000091316 2 2 2 80 9 114989966 114989986 AGATCTCCTCCAACACATCAC 60 114944930 114989928 CCTTCAAAGAAGCTCTCATACTC 59 NA Rattus norvegicus 81 Olr1355 ENSRNOG00000050126 ENSRNOT00000073059 2 1 1 60 10 12312127 12312145 CCCTCCTGAAACTCTCCTG 59 12312085 12312106 CCCTCTGTAAGAATCATCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 1 2 2 85 18 64033404 64040275 GGGCTTCAGAGATCATGTG 58 64040324 64040342 GAAACGACTGAACGGATCC 59 NA Rattus norvegicus 81 Astl ENSRNOG00000022603 ENSRNOT00000039043 1 1 1 80 3 119789203 119792041 GATCCTCCCAGGCTTTGAG 60 119792082 119792103 ATCACTGACGAGTAGTCATAGG 59 NA Rattus norvegicus 81 Olr1251 ENSRNOG00000046136 ENSRNOT00000071452 1 1 1 60 4 1671797 1671817 TACTTCTGTGATCTCCTCCCT 60 1671837 1671857 TCTCATTGACATAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Colgalt2 ENSRNOG00000028207 ENSRNOT00000030109 2 1 1 80 13 69896007 69899169 ACTGGGAACTGATTTACATCG 58 69899210 69899229 CGAGATTTACAACATTGGGC 58 NA Rattus norvegicus 81 RGD1564053 ENSRNOG00000005375 ENSRNOT00000066254 3 1 1 80 5 7327587 7335024 AAGCGAATCATCAGAACCC 58 7327525 7327544 GGCTTCTTTGCATTCATCTG 58 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 3 3 3 80 12 37680956 37688474 CATTGTAGTCAAGTGCCACC 59 37680895 37680913 TCCACTTTCTCCTGGAGGA 60 NA Rattus norvegicus 81 Olr875 ENSRNOG00000048675 ENSRNOT00000045810 2 1 1 60 7 3426673 3426693 TGGGACTGTGGCTTATATGAG 59 3426714 3426733 AAGAATCTGGTCTGTGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr875 ENSRNOG00000048675 ENSRNOT00000045810 3 1 1 60 7 3426674 3426693 GGGACTGTGGCTTATATGAG 58 3426714 3426734 TAAGAATCTGGTCTGTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcrh ENSRNOG00000012550 ENSRNOT00000016751 2 1 1 93 5 134921965 134922689 AAGAGGAAGAATTAGTGGACCC 60 134921893 134921911 CACGACTCTAGTCGTTCCC 60 NA Rattus norvegicus 81 Nmnat2 ENSRNOG00000027697 ENSRNOT00000038183 3 1 1 80 13 70379489 70379507 CAAAGACCCACGTTATCCT 57 70379551 70516926 TGGCTCTTTCGAACATCTG 58 NA Rattus norvegicus 81 Dhx9 ENSRNOG00000002735 ENSRNOT00000064860 3 1 1 80 13 70888343 70888363 CAATTACTTCTCTTTGCCTCC 57 70887974 70888303 TATTTGCAGTCTGATCCAGTC 58 NA Rattus norvegicus 81 Rap2b ENSRNOG00000014420 ENSRNOT00000019340 2 1 1 60 2 151685334 151685352 CATCGAGAAGTACGACCCA 59 151685376 151685394 CGAATCCACCTCGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 2 2 2 88 4 170779901 170780880 TTTGATGCCGTCAAGAACG 59 170779831 170779850 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000048801 ENSRNOT00000047421 3 1 1 60 10 61088579 61088599 ATCAGTGTCACTATTCCCTCC 59 61088539 61088558 ATGGAATTGTATGCTTGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365839 ENSRNOG00000048109 ENSRNOT00000074617 1 1 1 60 11 79548285 79548304 TGATTTCAGACAGCATTGGG 59 79548326 79548345 TGGAGAGGATAGATGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc8d ENSRNOG00000002121 ENSRNOT00000002888 3 1 1 97 14 5089015 5101011 GATCATGGGAATGTTTACCCT 58 5088938 5088957 AATCCATAAACACGTCCCAC 58 NA InUTR Rattus norvegicus 81 Tenm3 ENSRNOG00000012802 ENSRNOT00000017624 1 1 1 80 16 46806067 46807164 GAACTGTGAAGAAGCGGAC 59 46807208 46807226 GGATTGCAGTGACATTCCC 59 NA Rattus norvegicus 81 Rnasel ENSRNOG00000027017 ENSRNOT00000032157 2 1 1 80 13 71196125 71197502 GACTTGGAGGACCTTGGAC 60 71197544 71197564 ATTCTGACCCTTCAGTGTCTC 60 NA Rattus norvegicus 81 Ifnl3 ENSRNOG00000026584 ENSRNOT00000035328 3 1 1 128 1 85236502 85236621 CAGACCTGTACAGAGCCTC 59 85236309 85236327 GGTGACATAGGCCTTCAGG 60 NA Rattus norvegicus 81 Lsmem1 ENSRNOG00000039110 ENSRNOT00000059823 3 1 1 81 6 60121228 60121249 TATGTCGTGGATTCCATAAACG 59 60119591 60121192 TCTCCTCTAAAGAGAATAGATGCTG 60 NA Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000040513,ENSRNOT00000073905 3 2 2 200 7 120140940 120140958 TTTCCTTCGCCAAGTTGAC 59 120144583 120144601 ACTGGAACATGTAAGGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Mrps26 ENSRNOG00000021224 ENSRNOT00000028828 3 1 1 87 3 123093950 123094495 TTCTCAAACTGCAGGAGGAG 60 123094545 123094563 CTCTTCGGAGAGTCCAAGG 59 NA Rattus norvegicus 81 Gpr35 ENSRNOG00000024030 ENSRNOT00000036328 2 1 1 60 9 100137888 100137909 ATACAAATTGTAGCATCCTCCC 58 100137928 100137948 AAGTAGATGGTGAAGACGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acadvl ENSRNOG00000018114 ENSRNOT00000024973 3 1 1 80 10 56620491 56620512 GAATCTTCCGGATCTTTGAAGG 59 56620358 56620451 CCTTTCCTTTGTCCATGCAG 60 NA Rattus norvegicus 81 Porf1 ENSRNOG00000003891 ENSRNOT00000005162 1 1 1 60 6 114476642 114476660 CTGATGTACCAGGCTTCCC 60 114476600 114476621 ACTAATGTCCAGGTTGATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt13 ENSRNOG00000005335 ENSRNOT00000048804 1 1 1 80 3 40399872 40399893 CAGAAGACTAGCAGAAGTTTGG 59 40399931 40568708 TAATCCACTTTGACAACACCTG 59 NA Rattus norvegicus 81 Tbc1d25 ENSRNOG00000005303 ENSRNOT00000007130 2 1 1 93 X 15064900 15066482 CCGAGTCAAGAAATGTGAGAG 59 15066537 15066555 GATATGCTGCAACACGTCC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 2 2 2 80 7 70337661 70337898 GTGTTGAGATTGTACCCTGTG 59 70337934 70337958 GGGAATAACATAGTTTCCTACACAG 59 NA Rattus norvegicus 81 Prps1l1 ENSRNOG00000032513 ENSRNOT00000052356 3 1 1 60 6 54418070 54418091 GGACTTATCCCAGAAGATTACC 58 54418111 54418130 CTTAGTTACCACCTTGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 2 2 2 80 1 91883214 91883233 GACTCTTTCTCAAGCAACGG 59 91883275 91884982 AAGCGATGTGCTTAAACAGG 59 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000049124 ENSRNOT00000074775 3 1 1 80 17 32090058 32090077 GTGTGAAGAGAAAGCAACAG 57 32090120 32090220 TTCACATCCTCCTTGTCCT 58 NA Rattus norvegicus 81 Lyrm4 ENSRNOG00000047970 ENSRNOT00000072056 2 1 1 113 17 29457562 29457582 GAATAAGAGATGCCTTCCGAG 58 29457657 29552356 CAATAAGGACCTGTCTGCG 58 NA Rattus norvegicus 81 AABR07065750.1 ENSRNOG00000045984 ENSRNOT00000072365 3 1 1 106 6 140215936 140216038 CATTTCCAAGCTGTGTCCT 58 140215848 140215866 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 1 6 6 80 7 132140938 132140957 ATTCACGAAGATTCGACTGG 58 132140133 132140896 CTGCATCATCTCTGGTTCTG 59 NA Rattus norvegicus 81 Svs3b ENSRNOG00000036782 ENSRNOT00000055166 1 1 1 80 3 159084577 159084596 GAAGTCCATCTTCTTCAGCC 58 159084288 159084536 TTTGTCCCACCATAGATTCCT 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000016827,ENSRNOT00000090565,ENSRNOT00000017108 3 4 4 80 7 120522754 120527877 TGTCAAGAAACCCAAGGTG 58 120522692 120522710 TCGTAATTCCGGAAGAGGT 58 NA Rattus norvegicus 81 RGD1562024 ENSRNOG00000042749 ENSRNOT00000065217 1 1 1 110 17 8616884 8617474 AGAGATGGATGCCTTTCCC 59 8616792 8616810 ATCCTGGCTGTCATCACAC 60 NA Rattus norvegicus 81 Stk35 ENSRNOG00000006002 ENSRNOT00000008071 3 1 1 80 3 122310537 122318088 GCTCAAAGGAGAAAGGATCC 58 122318130 122318149 TCTCCACCTTCACAGTACTC 59 NA Rattus norvegicus 81 Rn60_1_0959.1 ENSRNOG00000051237 ENSRNOT00000076542 1 1 1 80 1 94724774 94725382 CATCTTGGAACAGGACTCAG 58 94725424 94725443 AGTACAGAGGAGGTCAACAG 59 NA Rattus norvegicus 81 E2f5 ENSRNOG00000010760 ENSRNOT00000044847 1 1 1 80 2 88351951 88353347 ATCTTCAGGATCTATTAGTGGAGAC 60 88351440 88351459 GTAGGAGACAGCCGTAAGAG 59 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 2 1 1 61 8 18431138 18433986 AGGCTAAGAACGGAGTCAG 59 18434010 18434029 GATTCTCACAGTCACATTGC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mab21l1 ENSRNOG00000032941 ENSRNOT00000040631 3 1 1 60 2 145175592 145175612 GTGTTTAACTTCGTGGATGAC 58 145175634 145175652 CATCGCTCAGTTTCAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 3 2 3 83 17 30623119 30625418 TTTCACAGGAGTTGGTGAC 58 30625464 30625483 ACCTTGTCCTGTATTTCACC 58 NA Rattus norvegicus 81 LOC100361105 ENSRNOG00000030812 ENSRNOT00000042900 2 1 1 81 6 141147082 141147186 CCCTTCCTGGTATCCTGTC 59 141147019 141147037 GTGAGGGAGAGTGACTGTG 59 NA Rattus norvegicus 81 LOC688981 ENSRNOG00000032000 ENSRNOT00000046585 1 1 1 60 6 96202102 96202120 GAGAGGAAAGCCAAGTCCA 59 96202060 96202081 TCGTTTCTTCCTTGTATTTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmrk1 ENSRNOG00000012665 ENSRNOT00000016930 3 1 1 80 1 234739347 234742694 ATTGGTGGTGTGACAAATGG 59 234739286 234739305 AGATATTACGCTGCAGTTGG 58 NA Rattus norvegicus 81 St3gal3 ENSRNOG00000019843 ENSRNOT00000056842 3 1 1 80 5 136795554 136795572 TGACTCCTTTCGCAAATGG 59 136791108 136795513 GCTTTGATCAGATTGTCTTGAC 58 NA Rattus norvegicus 81 Rps15al2 ENSRNOG00000032877 ENSRNOT00000046642 1 1 1 60 11 84094812 84094831 AGTTTGGTTTCATTGTGCTG 58 84094853 84094872 CGTCTTGCCTCTTCATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a23 ENSRNOG00000017210 ENSRNOT00000023149 3 1 1 80 17 31282258 31282277 CAATGTTCAGCACACTCAGG 60 31282316 31358343 GCTCTATTCGTAATGCATACAGG 60 NA Rattus norvegicus 81 Tmem243 ENSRNOG00000042758 ENSRNOT00000066211 1 1 1 80 4 21919959 21919977 CTACCAGGACCTATGGGAC 58 21905524 21919917 AATTGATGATTCGGTCCTTGG 59 NA Rattus norvegicus 81 Tmem243 ENSRNOG00000042758 ENSRNOT00000066211 3 1 1 81 4 21904418 21904436 ACTACCTCCCAAACCACTG 59 21903353 21904375 CCAGTAGATAAGTATGCAGGC 58 NA Rattus norvegicus 81 AABR07065823.1 ENSRNOG00000030235 ENSRNOT00000046885 2 1 1 84 6 142932976 142933076 CAGCTACAGGTGTCCACTC 60 142932910 142932929 CAAGACAACTTCACAGAGGC 59 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 1 2 2 80 9 20215438 20215457 GTTAGACGAAAGGGAAGCTG 59 20215498 20215934 CAGTCCTTCACATTATCTGCG 59 NA Rattus norvegicus 81 Dennd5a ENSRNOG00000012206 ENSRNOT00000017485 1 1 1 80 1 174531042 174531060 TCCTCTATCACCTGCTCTC 58 174529807 174530998 GGTATGGGATCAGGATGGT 58 NA Rattus norvegicus 81 Sh2b3 ENSRNOG00000028198 ENSRNOT00000030583 3 1 1 130 12 40262086 40262182 TTTGTGTTGAAGGTGCAGG 59 40262351 40262369 GGTAACTCTGTGTCCAGGT 59 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 3 2 2 84 7 144826212 144826233 AAGGAAACAAGAGGAAATCCAG 59 144821383 144826168 GCGATATCATTGCTTTGCTC 58 NA Rattus norvegicus 81 AABR07051562.1 ENSRNOG00000042083 ENSRNOT00000063862 2 1 1 89 3 17081247 17081471 TGGATTTCTGGTACCTGTGG 60 17081177 17081197 GCAGTTTATAGTGACCGTCTC 59 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 1 2 2 80 10 87225551 87225903 GGAAACCAAAGCAAAGATTCC 58 87225491 87225509 TAGAATCTTGCTGCGTTGG 58 NA Rattus norvegicus 81 Cpsf7 ENSRNOG00000020668 ENSRNOT00000028074 1 1 1 80 1 226580059 226580081 GCTCTATAGGAGTCTATGATGTG 58 226580120 226580510 CCTCAGCATACCCTTTAGAC 58 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 3 2 2 80 14 71872691 71872712 GTAGGAAAGATGAAAGTCGTGC 60 71872751 71874775 ATTCCTCTGCAGACTCTTCAG 60 NA Rattus norvegicus 81 Nts ENSRNOG00000004179 ENSRNOT00000005706 3 1 1 80 7 44120896 44120917 TGATAGGAATGAACCTTCAGCT 59 44118765 44120858 CTTCTTCTGAATCTGAGCACAG 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 2 3 3 80 4 22104869 22106910 GTAGCTGTGATCATGCTCCT 60 22106953 22106971 CCGTCTCTAGGAGCTTCTC 59 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183,ENSRNOT00000022382 2 2 2 80 1 277095773 277096804 ATCACAACTTCTGCAGAAACC 59 277096845 277096864 CCCATTTCACCTTCTCACTG 59 NA Rattus norvegicus 81 Ric3 ENSRNOG00000014691 ENSRNOT00000020137 3 1 1 80 1 173642890 173642911 CAAGTTCATTGACACATCTCCA 59 173634026 173642851 GTCTCTTCTGGGTAACCTTCC 60 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 3 3 3 80 1 135354896 135360200 AGCTTTGTCATAAGGTGCA 57 135354834 135354852 CATGGTCACTAGGTCAGTC 57 NA Rattus norvegicus 81 Wdr82 ENSRNOG00000048441 ENSRNOT00000074771 3 1 1 94 8 114879824 114880200 TTGATAAGGGTCCATTTGCT 57 114880256 114880275 GAGTATCAGTTTGCCATCGT 58 NA Rattus norvegicus 81 Idua ENSRNOG00000000043 ENSRNOT00000000048 3 1 1 80 14 2044233 2044251 CCACATACACCCTAACGAC 58 2044092 2044189 ACTACGTAGACAAGCTCCA 58 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 3 3 3 80 8 111078413 111079534 AAGCACTCAGTAGAAAGGTCTC 60 111078354 111078373 ATTATCCAAGACTCCCTGCC 59 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 2 2 2 93 7 121311156 121328653 GTGTCTTGGGTCTTCTCCA 59 121328709 121328728 TGTAGATGCAGAACTCCTCC 59 NA Rattus norvegicus 81 Prg4 ENSRNOG00000002385 ENSRNOT00000068148 1 1 1 80 13 67681038 67683343 CGAAGAAGTGCATAATCCCA 58 67680977 67680995 GTTGATTTGATGGTGCGAG 57 NA Rattus norvegicus 81 Alox12e ENSRNOG00000019074 ENSRNOT00000025910 3 1 1 80 10 56930383 56931790 GCATCCCATATACAAGCTCC 58 56930322 56930342 GAGACAAGATTATTCCGTGCC 59 NA Rattus norvegicus 81 Rbm24 ENSRNOG00000046547 ENSRNOT00000072682 2 1 1 80 17 18681392 18681413 GGCCTGTAAGGATCCTAACC 60 18681329 18681347 ATTCTTGGTTTGGCTCCCA 60 NA Rattus norvegicus 81 Enthd1 ENSRNOG00000025344 ENSRNOT00000034912 2 1 1 80 7 121752047 121778110 AGACCAAGGTCGCTATATCC 59 121751986 121752004 CGCTCTTTGTAAAGCAGCT 59 NA Rattus norvegicus 81 Cnppd1 ENSRNOG00000018325 ENSRNOT00000024975 2 1 1 80 9 82343915 82343935 AGACTCTATTATGGCTGGGAC 59 82343056 82343874 TTCCACAGTAATGTCTGCCA 59 NA Rattus norvegicus 81 Slc16a13 ENSRNOG00000018785 ENSRNOT00000025403 2 1 1 81 10 56828955 56828973 AGGATTTACTGTGGCCTGG 59 56828122 56828911 GGAGGTAGCCTGATAGAGGA 60 NA Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000082149,ENSRNOT00000055290 2 2 2 226 7 144778073 144778091 TTCCTGGGCATGAATCCAG 60 144776901 144776920 AAGAAGACTTGAGGCTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000072750 2 1 2 93 1 81396020 81396040 CGCTGTCATTTCGTCTTAAGG 60 81396567 81396585 CAGTCACATCACCCTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pgm5 ENSRNOG00000015406 ENSRNOT00000020763 3 1 1 80 1 242720298 242725029 TTCAAACCATTCAGAGTGGAG 58 242720238 242720259 GGCGTTAAAGTCAAAGATAGTC 58 NA Rattus norvegicus 81 Srgap3 ENSRNOG00000006509 ENSRNOT00000009066 2 1 1 80 4 144693480 144697627 AGATGAAGGAGAAGAGGCAG 59 144693419 144693440 GATTCAGCAGGTAGTCATTTCG 60 NA Rattus norvegicus 81 Ikbkg ENSRNOG00000060936 ENSRNOT00000078438 2 1 1 86 X 156260949 156264077 ATTAAGAGCAGCAAGGGCA 60 156260881 156260901 CAATTCCTGTTTGGCTACCAG 60 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 1 2 2 86 16 48122377 48210101 CATGACATCAGGTGATGTGTC 59 48210149 48210167 GCCAAGCAAAGGATTTCCC 60 NA Rattus norvegicus 81 Eftud2 ENSRNOG00000002818 ENSRNOT00000055176 1 1 1 80 10 90937069 90937794 GAGATCGACATCAAGGTGG 58 90937007 90937025 AGCAAAGCATTTGAGGGAG 58 NA Rattus norvegicus 81 Lrrk2 ENSRNOG00000004048 ENSRNOT00000005438 2 1 1 80 7 132996947 132996965 ACACCCTCGACAAGATGAC 59 132997008 132998439 GGAAGTGACTTTGCTTGCTC 60 NA Rattus norvegicus 81 Ogdhl ENSRNOG00000019955 ENSRNOT00000027054 1 1 1 80 16 8518887 8519835 TATGGAGTTCTAGGCTTTGAG 57 8519877 8519895 ATCACCAAACTGAGCTTCC 58 NA Rattus norvegicus 81 Ogdhl ENSRNOG00000019955 ENSRNOT00000027054 2 1 1 80 16 8513269 8513429 AGGGTAGGAAGGTCATGTC 58 8513471 8513491 GATGGAAGGTCTCATAGACGA 59 NA Rattus norvegicus 81 Xrcc4 ENSRNOG00000029966 ENSRNOT00000045850 2 1 1 80 2 18805607 18806700 CAAACCTGAAAGGGAAACTCC 60 18805547 18805566 CTTTCTTCATCAGTGCTGCC 60 NA Rattus norvegicus 81 Sharpin ENSRNOG00000012812 ENSRNOT00000018031 3 1 1 81 7 117413693 117413781 CCGAGAAGTTTCAGGACAC 58 117413630 117413648 CAGCTCCAATGACTGAGGA 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 2 1 2 80 9 82375190 82375773 GGACATTTCACAGGTAACCC 59 82375129 82375147 GTGTCGTTGAAGAGGACAG 58 NA Rattus norvegicus 81 Bcl3 ENSRNOG00000043416 ENSRNOT00000025913 2 1 1 114 1 80733421 80733625 ATGCAGTGGATATTAAGAGCG 58 80731926 80731944 TACATCTGAGCGTTCACGT 59 NA Rattus norvegicus 81 Spatc1 ENSRNOG00000029590 ENSRNOT00000050522 2 1 1 87 7 117342824 117349554 GAAGATCATCCAGGCCTCC 60 117349604 117349623 GATGCTCACATAACGCTGTG 60 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488,ENSRNOT00000009693 1 2 2 80 6 105468800 105468818 GAGTTTGATCAGCAACCGA 58 105467680 105468756 CCTGGTGTCAACTGAATGG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000048738 ENSRNOT00000009295 2 1 1 80 X 15299658 15299678 CCCAGTACATGAATGAAGGAG 58 15299717 15299891 ATGAATATGAGTTCGGATGCAG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000048738 ENSRNOT00000009295 3 1 1 80 X 15301206 15301225 TATTGCATGTTCAACCACCT 58 15301268 15301397 GTCCACGATGAGAATCCTC 57 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000046936 ENSRNOT00000074272 2 1 1 92 3 19128438 19128630 CAGTATCACAGTCTTAGTGTCCA 60 19128682 19128700 GTGATGGTGACCTTCTCCC 60 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000046936 ENSRNOT00000074272 3 1 1 92 3 19128439 19128631 AGTATCACAGTCTTAGTGTCCAG 59 19128683 19128701 GGTGATGGTGACCTTCTCC 60 NA Rattus norvegicus 81 AC139976.1 ENSRNOG00000059843 ENSRNOT00000078098 2 1 1 136 6 101868038 101873400 CCTCCATTGTTGGGTTGTG 59 101865080 101865098 AAGTATGATGGGATGCCGA 59 NA Rattus norvegicus 81 AABR07065823.2 ENSRNOG00000050708 ENSRNOT00000075707 1 1 1 60 6 142903307 142903325 AGAGTCATGGAAAGAGCCT 58 142903265 142903285 TTAGTAGCACCACTGTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559724 ENSRNOG00000034203 ENSRNOT00000047882 1 1 1 60 6 75470212 75470231 GGTGGACATAGTCAAGTTGG 58 75470171 75470191 GTAGAACCAGTTACCATACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp347 ENSRNOG00000031216 ENSRNOT00000044241 3 1 1 60 7 9976030 9976048 AGTGTGGTAAAGCCTTTGG 58 9975988 9976009 CCGGTATGAATTCTTTCATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr135 ENSRNOG00000004499 ENSRNOT00000005933 2 1 1 60 6 94817048 94817066 AGTTGTGCTCTTCTTCCGA 59 94817006 94817024 ATGCTGTTTGTAGACTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854,ENSRNOT00000044081 1 2 2 80 11 24492495 24497991 ATGTCCCAGGTCATGAGAG 59 24492433 24492452 GATAACGGCCTTCTTGTCAG 59 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000079152 3 1 2 80 13 74462843 74470797 TGACTTTCATCAATGAAGGACC 59 74470837 74470856 TCATGTAAATCCCACTGGCT 59 NA Rattus norvegicus 81 Mcm3 ENSRNOG00000012543 ENSRNOT00000017081 2 1 1 80 9 26928885 26929348 GCATCGTTACCAAATGCTC 58 26928823 26928844 CTATGGTCTTCTTAGTAGCAGG 58 NA Rattus norvegicus 81 Ubap1 ENSRNOG00000012004 ENSRNOT00000063849 2 1 1 80 5 57776508 57776529 ATGGGCTACTCATATGATTGTG 58 57776567 57777294 AAAGAGATAGTCGAGAATCTGC 58 NA Rattus norvegicus 81 Pdzrn4 ENSRNOG00000022844 ENSRNOT00000038686 1 1 1 80 7 133935711 133935730 AAGACCATGAGTACGTTTCC 58 133935773 133977283 GACACAACTCGACTTCCTC 58 NA Rattus norvegicus 81 Ndufb8 ENSRNOG00000014078 ENSRNOT00000019039 1 1 1 81 1 264301090 264301899 GTGAACCGATACACTGGGA 59 264301027 264301045 ATGACATCCCAGGAAACCG 60 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336 3 1 2 81 8 57886214 57886233 AAGAAGCCAGGAAGATCCTC 59 57886276 57921377 TGAAGTTTGCTGATCCTGTC 58 NA Rattus norvegicus 81 AABR07066965.1 ENSRNOG00000050239 ENSRNOT00000068080 2 1 1 91 9 23905327 23919866 ACTGAAGGAAGGGTACTGC 59 23905254 23905272 TCAGTCTTGTCCAAGGCAG 60 NA Rattus norvegicus 81 Hmx2 ENSRNOG00000020638 ENSRNOT00000028011 3 1 1 199 1 203521151 203521169 CTTGTCTGTGTCCTCGGAG 60 203522179 203522198 GAGAAGGAGAAAGGAAAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Trmt12 ENSRNOG00000008978 ENSRNOT00000011876 2 1 1 60 7 98749141 98749159 GGTACTCGAACTCCGACAG 60 98749183 98749201 CTACATGCTCTACCCAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 3 1 1 81 1 100204504 100204522 CAGGTATCCTACCAGCTGG 59 100204300 100204459 TGAGGAAGGACAAAGTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Styxl2 ENSRNOG00000004453 ENSRNOT00000005884 2 1 1 60 7 62911015 62911035 AGTGGACTTACCCTATGAGAC 58 62911057 62911075 GGGCCTAAGAACAATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thyn1 ENSRNOG00000047053 ENSRNOT00000073373,ENSRNOT00000085997 1 2 2 80 8 28050158 28050179 AAACTTAAGCAACTACTGGCTG 59 28050219 28051623 TCGATGCTGAACTTCATGTC 58 NA Rattus norvegicus 81 Ndufaf7 ENSRNOG00000005279 ENSRNOT00000007000 1 1 1 80 6 1535026 1535048 ATAAAGTCTACAGGTCCCATCAC 60 1535087 1536243 GTGCACGTAATATCCCTTGG 59 NA Rattus norvegicus 81 Elovl4 ENSRNOG00000009773 ENSRNOT00000012999 2 1 1 80 8 91321757 91338537 GGTCCATTGCAGATAAACGT 59 91321696 91321719 GATAGAGTGTGCTTATGCTTAGTG 60 NA Rattus norvegicus 81 Sp110 ENSRNOG00000033747 ENSRNOT00000056995 1 1 1 80 9 92610822 92613427 CGAATGTACAAGGAATCTCTGG 59 92610763 92610784 CAGACTGGTGAGAATATTGTGC 60 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315,ENSRNOT00000089041 1 2 2 93 16 10948563 10948581 ATCTTCAGGGCCATTCGAG 60 10948186 10948204 ATTCACTCTGTAGCCGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Crh ENSRNOG00000012703 ENSRNOT00000016953 3 1 1 194 2 104461733 104461751 GTACCTCGCAGAACAACAG 59 104460888 104460906 GCAAGAAATTCAACGGCTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302,ENSRNOT00000027271 3 2 2 80 5 137039129 137039147 CGTGGTTGACATGTTCCAG 59 137038593 137039085 AGCTGGTATTGGTCCTCTG 59 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218,ENSRNOT00000065373 1 2 2 80 10 91275932 91276173 CCTAGCACAGCAGAGTCAG 60 91276216 91276235 GTTAGGTAGTGGAGGTGGAG 59 NA Rattus norvegicus 81 Rn60_1_1354.1 ENSRNOG00000051332 ENSRNOT00000076660 3 1 1 68 1 134335898 134335918 TTTAAGCAGCATGAACGACTC 59 134335850 134335868 TAGGCATCACCCATCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef28 ENSRNOG00000016544 ENSRNOT00000065143 3 1 1 80 2 25771516 25771534 GGCCACTGTAAGCATAGTC 58 25770376 25771474 TCGATTAAGTTCCGTTACCTC 58 NA Rattus norvegicus 81 Rbmxl1b ENSRNOG00000059347 ENSRNOT00000081688 2 1 1 90 4 42186957 42186976 TTTCTACAGCAGTTCAAGCC 59 42186885 42186903 CTAGAATCTGCTTCTGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Olr982 ENSRNOG00000002333 ENSRNOT00000003174 2 1 1 60 7 4216315 4216335 TGTGACTCCAACATCATTGAC 59 4216275 4216293 AAGAGATGAGCAGCAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spc24 ENSRNOG00000029862 ENSRNOT00000045384 1 1 1 81 8 22780933 22781832 GATGGTCAAGGGCATTCAC 59 22780870 22780890 GATGAACTTCTGTGAGAGCTG 59 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000065048 2 1 2 112 9 19452877 19454535 TTATTTCTTAGGTGACCATGGC 59 19454608 19454626 CAGTGTTGATGGTGCTCTG 59 NA Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 1 2 2 80 7 58340390 58342731 CCTATTATGGTAGCTTGCGG 58 58340329 58340351 CATTACAGGAGATCACAACAGAG 59 NA Rattus norvegicus 81 Ier5 ENSRNOG00000059406 ENSRNOT00000077157 2 1 1 259 13 72743965 72743984 CAAGTCTACTTGAGTGACCC 58 72743000 72743018 CAGGATGAGACTCGAGAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 1 2 3 80 7 14539624 14539642 ATCAGCCTGATGACCTTGG 60 14539684 14540431 GTATTCACTGGGAGACTCCTG 60 NA Rattus norvegicus 81 LOC102551069 ENSRNOG00000040063 ENSRNOT00000061605 2 1 1 119 11 28940551 28940611 GGCTATGGCTATGGAGGTC 59 28940450 28940469 ATATCTAGAGCCACAGCCAC 59 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 2 2 2 94 5 12143591 12143609 GAGTCCAGAAAGACCACGA 59 12141196 12143538 CATAATCTGTGTCAACTGATCCTC 59 NA Rattus norvegicus 81 Zbtb5 ENSRNOG00000012726 ENSRNOT00000017046 3 1 1 92 5 60558174 60558192 AAGCTTGGGAAGACAAGAG 57 60543043 60543061 ATCTGCTCAAAGTGACCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mis18a ENSRNOG00000021555 ENSRNOT00000037444 2 1 1 80 11 30885782 30890263 GATGGTTGCATCCTTGAGAC 59 30885721 30885739 GTTCTTGGGAGTGCATCTG 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 1 3 3 80 20 5111581 5112181 TTCTGTGAGGTGGATGAAGAC 60 5111521 5111539 TTGTCGATAGTGAGGCACC 60 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 3 2 2 80 9 27409666 27412165 TATGAGAAGGTGTTGAAGAGC 58 27412206 27412225 TTCAACCAGGGAAACATCAG 58 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741,ENSRNOT00000002881 2 2 2 80 11 30388734 30390648 AAATCCATAAAGATTGCCTGGG 59 30388675 30388694 AACACCAAGTTCAACATCCC 59 NA Rattus norvegicus 81 Mirlet7d ENSRNOG00000035594 ENSRNOT00000053717 3 1 1 60 17 16419990 16420009 GGAAGAGGTAGTAGGTTGCA 59 16420031 16420050 ATAGTTAACTCCTTGTGGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp3 ENSRNOG00000005009 ENSRNOT00000006641 2 1 1 284 10 57386705 57386723 TGAATTAGGGCGAGAGCAG 60 57392764 57392782 AATGTCTTCCTTGGGAAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adcy10 ENSRNOG00000053410 ENSRNOT00000082677 2 1 1 80 13 83778359 83778378 CCGGAATCCCAACAAATACC 59 83778419 83779302 ACCAAATGCTTGTATCTGCTC 59 NA Rattus norvegicus 81 Rimklb ENSRNOG00000023814 ENSRNOT00000032690 1 1 1 80 4 155260556 155262633 CTGTTCCCTAGGTGGTGTG 60 155260494 155260516 AGGATATTAGACACCTGGATAGC 59 NA Rattus norvegicus 81 Lsm14a ENSRNOG00000021133 ENSRNOT00000078585 3 1 1 83 1 90208194 90210080 GTGATGATAATAGAGAAAGGAGACC 59 90208135 90208153 TTGGACGAAGTGGGATTCC 60 NA Rattus norvegicus 81 LOC501110 ENSRNOG00000033402 ENSRNOT00000036813 2 1 1 80 9 27499831 27499852 TATTTCATTATGATGAGGCCCG 59 27494757 27499793 TCTCTTCATACTCTACTCCAGC 59 NA Rattus norvegicus 81 Rpl26-ps1 ENSRNOG00000032777 ENSRNOT00000046460 1 1 1 60 7 121943070 121943088 AGCAAGAACCGCAAATGTC 60 121943028 121943047 AAGACATGATCTTCCTCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl26-ps1 ENSRNOG00000032777 ENSRNOT00000046460 3 1 1 60 7 121943052 121943073 TGTCATTTCAATGCACCATCTC 60 121943013 121943032 CTTTGGAAAGCGGAGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem246 ENSRNOG00000006800 ENSRNOT00000008883 2 1 1 60 5 64850237 64850259 TCCTCCACTCATACTTCTATCTG 59 64850199 64850219 AGGAAATCTTGACTCATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387,ENSRNOT00000082422 2 2 2 85 13 83865727 83865745 AAATCACCATCCAGCACCA 60 83863679 83865678 AAGGCTAAATTGGCCTGGA 59 NA Rattus norvegicus 81 Rnf220 ENSRNOG00000019236 ENSRNOT00000026201 1 1 1 80 5 136135736 136135755 GAGAATCCAGACAGTGATGC 59 136135508 136135693 AGCCTCTGTGTATTGTGGT 59 NA Rattus norvegicus 81 RGD1310212 ENSRNOG00000026582 ENSRNOT00000036473 3 1 1 60 7 15362658 15362677 TGGCTAGGGAAATCTGTCTG 59 15362617 15362637 GTACTTGTCTTTGGGATGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909683 ENSRNOG00000046224 ENSRNOT00000071599 2 1 1 60 7 15722792 15722812 TTCACATTTGGCTACACTCAC 59 15722752 15722771 CTACATAGCGGTCATAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smgc ENSRNOG00000037025 ENSRNOT00000042254 3 1 1 80 7 133067374 133069217 AACCAGTGGCTCAGAAGAC 60 133069260 133069279 GACTGTGGAATTCTGTCAGC 59 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 2 2 2 80 10 70515040 70515061 CTCAGGACATACAAGCTATGGA 60 70514123 70515002 TCTTCTTACCAATGCTTCTGAC 59 NA Rattus norvegicus 81 Olr885-ps ENSRNOG00000028911 ENSRNOT00000051296 1 1 1 60 7 16010529 16010547 ATTCTACTGGGACTGACGG 59 16010487 16010508 GAAACAGAAAGGTGAAGATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrl ENSRNOG00000010832 ENSRNOT00000014623 2 1 1 80 16 54434107 54434126 GTAAGGGAAGCAAAGTGGAG 59 54398764 54434065 CATTCTGTTTCACGGTGAGG 59 NA Rattus norvegicus 81 AC106438.1 ENSRNOG00000059517 ENSRNOT00000084409 2 1 1 123 7 13466503 13466524 AGTCATGTACACTGTAGTTACC 57 13466398 13466417 AAGTAGGGAAGGTGGACTC 58 NA Rattus norvegicus 81 Taf6l ENSRNOG00000019419 ENSRNOT00000026284 3 1 1 80 1 224979202 224979222 TCCATCAACCCTTTGAATGAC 59 224978848 224979162 TCCATGAGTCCAGAAGATGTG 60 NA Rattus norvegicus 81 Krtap3-3l1 ENSRNOG00000049383 ENSRNOT00000045189 1 1 1 193 10 87475748 87475766 CCTCTGACAAGTCCTGTCG 60 87475573 87475591 ATAGGTGGTGAGGTTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476,ENSRNOT00000067931 3 2 2 80 4 145719473 145719494 GAACCATGATGAAGAACATCCT 59 145718173 145719432 TCTTCTCACCCACGAAGAG 59 NA Rattus norvegicus 81 Cul5 ENSRNOG00000008039 ENSRNOT00000010956 2 1 1 80 8 58203441 58207565 TATTAAGAACCCAGGAAGCCA 59 58203381 58203401 CTAATTCAGTCTGCAGCTGAG 59 NA Rattus norvegicus 81 Clec4a2 ENSRNOG00000030012 ENSRNOT00000051525 3 1 1 80 4 155805163 155861957 CACAGAAGATAAAGCCTGTAGC 59 155805104 155805127 GAGTCAGTTGAAGTAAAGTAGCAG 60 NA Rattus norvegicus 81 Trpm3 ENSRNOG00000027770 ENSRNOT00000018521 3 1 1 80 1 240669647 240669665 CTTTCGGACCCTCTACCAC 60 240671942 240672860 GGAATATCATCCTCCATTCCCA 60 NA Rattus norvegicus 81 RGD1305014 ENSRNOG00000020597 ENSRNOT00000027956 1 1 1 81 1 201940902 201940923 TGGAAGTATACTTAGGAGAGGA 57 201940135 201940862 TCATGTTCACTGTTATCCAGG 58 NA Rattus norvegicus 81 Krt24 ENSRNOG00000010970 ENSRNOT00000014851 1 1 1 83 10 87192685 87192703 TTGTGACCTGGAGATGCAG 60 87192414 87192639 AGGCACTTCATTTCCTCCTC 60 NA Rattus norvegicus 81 Olr38-ps ENSRNOG00000055775 ENSRNOT00000083691 2 1 1 91 1 167580754 167580774 GAGAACTAAGGAACGGCAG 58 167580681 167580702 CTCTCACAATCTGTGACTTCTC 59 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 2 2 2 80 1 279649157 279649177 TGGAAGAAGATATCAAGCTGG 58 279649217 279658851 ATTCCATTGACTTCATCTCCC 58 NA Rattus norvegicus 81 Mybbp1a ENSRNOG00000015236 ENSRNOT00000021134 2 1 1 80 10 59002936 59002957 GAACAAATTTGAACGGTTCTGG 59 59002995 59003124 CACATGTAGCTGGATGTATAGG 58 NA Rattus norvegicus 81 Anapc5 ENSRNOG00000001316 ENSRNOT00000001794 2 1 1 80 12 39216297 39216316 AGAGGAGGTATCTTGCAGTG 59 39216358 39220751 TTCTTCAACAAAGCAGCCTG 59 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933,ENSRNOT00000031855 3 2 2 80 5 155947610 155947631 TAACAGACGATACATCGATCCT 59 155947672 155948540 AACTCTTGTGCATCCTGCT 60 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 1 3 3 80 7 117362795 117362813 TACCTTACTCCCACCATCC 58 117362652 117362754 GAGAACTTGCACATTCTTTAGC 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 3 3 3 80 7 117360889 117360908 CAACTGGACCAGAGACTGAG 60 117360639 117360847 GATCTGAGACCTAGGGAAGC 59 NA Rattus norvegicus 81 Akr1a1 ENSRNOG00000016727 ENSRNOT00000023072 1 1 1 81 5 135483765 135484203 GATCTTGCTCAGATGGCAG 58 135483702 135483720 AATGTTCTGAAGGATGCGG 58 NA Rattus norvegicus 81 Lsm11 ENSRNOG00000005450 ENSRNOT00000007267 3 1 1 80 10 31029596 31029615 ATGAGACCTACCGTAAACCT 58 31029146 31029554 GCCGATCAAATAGCCTAGTG 59 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734,ENSRNOT00000007998,ENSRNOT00000080581 2 3 3 82 3 129783244 129783263 TCATATGGCCCTAGACATGG 59 129783308 129787087 TGTTGGAGTCAGCCTTCTC 59 NA Rattus norvegicus 81 Mfsd10 ENSRNOG00000012534 ENSRNOT00000017386 3 1 1 80 14 81365329 81365348 ACTGATGCTCTACTCCTTCG 59 81365474 81365566 TGTCCTGGAGAACCATAGC 59 NA Rattus norvegicus 81 Ccl9 ENSRNOG00000028548 ENSRNOT00000029184 2 1 1 87 10 70785290 70788134 TCGTACATGCGACAGAGAC 60 70784792 70784813 CAGTCTGAAGAGTCTTGAAAGC 59 NA Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 2 2 2 80 12 45038055 45039993 TTGAGCAGAAGATTGAAGAGG 58 45037995 45038014 CTTGTCTTTCCAGGAGAGTC 58 NA Rattus norvegicus 81 Ndufaf5 ENSRNOG00000004784 ENSRNOT00000006412 2 1 1 80 3 133232636 133232655 GAGGAAGCAGAAGAATTGGG 59 133232698 133234000 ATCCGACTTCCAATCTCCT 58 NA Rattus norvegicus 81 Sox15 ENSRNOG00000012155 ENSRNOT00000016177 2 1 1 82 10 56260737 56260755 ACTACCCAAGGGAGTAGGG 60 56260801 56261391 TGGGAAGAGGTGTAACTGC 59 NA Rattus norvegicus 81 Sox15 ENSRNOG00000012155 ENSRNOT00000016177 3 1 1 83 10 56260737 56260755 ACTACCCAAGGGAGTAGGG 60 56260801 56261392 ATGGGAAGAGGTGTAACTGC 60 NA Rattus norvegicus 81 Hexb ENSRNOG00000025274 ENSRNOT00000048554 2 1 1 80 2 27999727 27999746 CTTCATTAACCTCGAACCGC 59 27997312 27999690 GGTTCTTGTACAAGTAGAGAATAGG 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 3 2 2 81 3 9865831 9868323 CTCTACACCTTTGAAGGTCAG 58 9865770 9865789 CTTTGTCCTCCTCAATCACG 59 NA Rattus norvegicus 81 LOC100910606 ENSRNOG00000048998 ENSRNOT00000072522 2 1 1 60 5 137498409 137498429 CTGGCTCTGTTCTACAATGTC 59 137498449 137498469 TACGAAGGCTGTAGATGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stac3 ENSRNOG00000008050 ENSRNOT00000010639 3 1 1 80 7 70810069 70811098 CAGTATGCTTGTGTCTCTGC 59 70811140 70811159 CTTGTTTGCCATGATCACCC 60 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000017110 3 1 2 60 7 143883700 143883723 CTTCATGTTGACTTTCTCTACCAG 60 143883742 143883760 AGCGATAAAGGATTCCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppapdc3 ENSRNOG00000010068 ENSRNOT00000013507 3 1 1 65 3 11115220 11115238 AGAGGTGCTCATGAACCTG 59 11129177 11129195 TTCTGTACTCCAGCCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Fem1a ENSRNOG00000050646 ENSRNOT00000072771 2 1 1 60 9 10800082 10800101 TACCTTCCTAAGCCTGAACC 59 10800041 10800059 TCACCTCCCTGGAATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap57 ENSRNOG00000007037 ENSRNOT00000009196 3 1 1 80 5 137431114 137431134 GTGATTCACATCTTCACCACC 59 137427522 137431075 TACAAGTGAACGAATCTTCCCT 60 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199,ENSRNOT00000087771 3 2 2 81 1 178953442 178953461 AAGGATCGTGATGAGTTTCC 58 178944640 178953398 CTTCTTCCTGCGTTACCTG 58 NA Rattus norvegicus 81 Krtap2-4 ENSRNOG00000060847 ENSRNOT00000086873 2 1 1 137 10 87535401 87535419 GATCCTTCTCCTCCCAGAG 58 87535282 87535300 AGATGGGCCTAGTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4g ENSRNOG00000014650 ENSRNOT00000019956 3 1 1 80 1 264746547 264746825 CTGGCTCAATGATGCTGAG 59 264746869 264746887 ATCTTGTCATCGTCACCCA 59 NA Rattus norvegicus 81 Tmem5 ENSRNOG00000004421 ENSRNOT00000006051 2 1 1 80 7 64332629 64332650 ATAACATATGACAGCCCTTGGA 59 64330755 64332590 AGGAAACTTCCTGTATGTTGC 59 NA Rattus norvegicus 81 Fdx1 ENSRNOG00000012123 ENSRNOT00000016263 3 1 1 102 8 56374041 56378235 TAACAAACAGGTCACGGCT 60 56373957 56373975 ACAGACTGTCGGACATCTG 59 NA Rattus norvegicus 81 Pfn1 ENSRNOG00000003975 ENSRNOT00000005370 3 1 1 98 10 57274086 57275471 GTTAGCATTACGCCAGCTG 59 57274006 57274024 CACAGAACATTTCTGGCCC 59 NA Rattus norvegicus 81 Ptges3 ENSRNOG00000002642 ENSRNOT00000003787 1 1 1 80 7 2490585 2492588 GAAAGGGCCAAACTTAATTGG 58 2492628 2492648 AGACATGTCTTCATCTGAGTC 57 NA Rattus norvegicus 81 Slc37a3 ENSRNOG00000008725 ENSRNOT00000011915 3 1 1 80 4 67132911 67133480 CCAGAAGAAATTGGTCTCCC 58 67132850 67132868 AGCACCATTAATGAGTGGC 58 NA Rattus norvegicus 81 Rad54l2 ENSRNOG00000013570 ENSRNOT00000018475 3 1 1 80 8 115416778 115417752 AAACCTCATCAGATTGGTGG 58 115416717 115416736 GCCACTACTGGTCTTAAACC 58 NA Rattus norvegicus 81 Atp5o ENSRNOG00000001991 ENSRNOT00000002732 1 1 1 80 11 32082909 32082927 GTCATCTCTGCCTTCTCCA 59 32082021 32082868 ATCTAAAGGAAATGCTGTGGTC 59 NA Rattus norvegicus 81 Ifng ENSRNOG00000007468 ENSRNOT00000009919 2 1 1 80 7 61338917 61338939 CACCTGATCACTAACTTCTTCAG 59 61338978 61341283 GTTGTTCACCTCGAACTTGG 60 NA Rattus norvegicus 81 Hsd17b10 ENSRNOG00000003049 ENSRNOT00000043559 1 1 1 80 X 21698284 21698303 TGGCCATTAAGACATACCAC 58 21698343 21698492 TGAGATTCACATTGATAACCCG 59 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000046521 ENSRNOT00000073993 3 1 1 81 9 90871511 90872067 GGACAAGACCTTGGTACTC 57 90872111 90872130 ACACGTTATCGACGTTACAG 58 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 2 2 2 80 7 138474243 138476667 AGAACATTGGAGCCATGTC 58 138474181 138474200 CAAGTCCCATGAACACTCTG 59 NA Rattus norvegicus 81 LOC100911774 ENSRNOG00000045655 ENSRNOT00000070921 2 1 1 80 1 88683062 88683080 CGGAGAATATGAGGACGTG 58 88682598 88683018 CGAACTGTGTTCTGTCTCC 58 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 3 3 3 83 20 4532688 4532706 GCTATCAGTGCCATCAAGG 58 4532752 4533421 CTCTGGGTCCTTTAACTTCC 58 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684,ENSRNOT00000092063 1 2 2 80 1 251237267 251239540 CATCAGAAGAAAGTCATGACGA 59 251237208 251237228 TCTTCATCTTCTCAATTGCCC 58 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834,ENSRNOT00000066114 3 2 2 85 3 119719203 119723823 CAAGTCATTTGATGAGAATGGC 58 119723868 119723887 AACTGACACAGTATCGAGGG 59 NA Rattus norvegicus 81 Dennd2d ENSRNOG00000017680 ENSRNOT00000023807 2 1 1 80 2 209107784 209107805 GCAGATTATTCAGATCTTTGCC 58 209107846 209110130 TGAGACAGGGTACTCAGAC 58 NA Rattus norvegicus 81 RGD1564184 ENSRNOG00000046289 ENSRNOT00000048829 2 1 1 60 3 17009125 17009145 CAGGTCTTCGTATTTCTGCTG 59 17009359 17009378 GGGTCATCACAGTATTCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Entpd7 ENSRNOG00000016883 ENSRNOT00000064510 1 1 1 80 1 263483915 263483935 TACTGCACAGAGGATGTACTG 59 263483977 263486701 GCCACAGTAATCCTGAGCA 60 NA Rattus norvegicus 81 AABR07051578.1 ENSRNOG00000042846 ENSRNOT00000065927 1 1 1 90 3 17345528 17345747 GGTATCTGTTGGTACCTGTG 58 17345798 17345818 GCATCTCATAGTGACCTTCTC 58 NA Rattus norvegicus 81 AABR07051578.1 ENSRNOG00000042846 ENSRNOT00000065927 2 1 1 92 3 17345526 17345744 TGGGTATCTGTTGGTACCT 57 17345798 17345818 GCATCTCATAGTGACCTTCTC 58 NA Rattus norvegicus 81 Arf2 ENSRNOG00000004807 ENSRNOT00000006483 1 1 1 80 10 92025888 92036438 GAACACTCAAGGTCTGATATTCG 59 92036477 92036496 ATTCTGGTCAGTTCTTCCCG 60 NA Rattus norvegicus 81 Arf2 ENSRNOG00000004807 ENSRNOT00000006483 2 1 1 80 10 92025889 92036438 AACACTCAAGGTCTGATATTCG 58 92036478 92036497 CATTCTGGTCAGTTCTTCCC 58 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104,ENSRNOT00000088208 1 2 2 80 8 59203867 59203885 CACATCTAAAGGCAGTGGT 58 59203717 59203824 CTATGAGTTCCTCCATCGTG 58 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104,ENSRNOT00000088208 2 2 2 80 8 59203866 59203884 ACATCTAAAGGCAGTGGTG 58 59203716 59203823 TCTATGAGTTCCTCCATCGT 58 NA Rattus norvegicus 81 LOC100909885 ENSRNOG00000049554 ENSRNOT00000072517 3 1 1 60 2 35178643 35178664 TGATCCTGCTCATCATAGTCAG 60 35178682 35178703 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc8 ENSRNOG00000019766 ENSRNOT00000026757 3 1 1 60 19 57647620 57647638 ACGCATCCTTCCTTTACGA 59 57647578 57647596 ACACCTTCCTCAAACCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbx2 ENSRNOG00000006885 ENSRNOT00000009143 2 1 1 80 7 136974583 136974603 CAGAAGCAGAAATACATCAGC 58 136967518 136974542 AATCTTCACCTGTGACTCCT 58 NA Rattus norvegicus 81 Dbx2 ENSRNOG00000006885 ENSRNOT00000009143 3 1 1 81 7 136974582 136974603 CAGAAGCAGAAATACATCAGCA 59 136967517 136974542 AAATCTTCACCTGTGACTCCT 59 NA Rattus norvegicus 81 Tyw3 ENSRNOG00000028328 ENSRNOT00000032874 1 1 1 80 2 260880593 260881441 AAAGATGACGTGATGGCAG 58 260880531 260880551 CTGCACATGGAGGATAAATGG 59 NA Rattus norvegicus 81 Lamp5 ENSRNOG00000005457 ENSRNOT00000007274 3 1 1 80 3 129019860 129019878 CTCATGGCAGAGTTTGCAG 59 129019921 129020312 CTGCTCTGTGATCAGATCCA 59 NA Rattus norvegicus 81 Mettl2b ENSRNOG00000006131 ENSRNOT00000008140 2 1 1 80 10 93360486 93360975 AATTGTTCCAGACAAGATGCAG 60 93361016 93361034 TCTCGAAGAAGCATCACCC 60 NA Rattus norvegicus 81 Tmem192 ENSRNOG00000030199 ENSRNOT00000042181 1 1 1 80 16 26633346 26633364 CATGCTCACTTTAGACCCA 57 26628821 26633303 AAACACGACGTGTATAAGCA 58 NA Rattus norvegicus 81 RragB ENSRNOG00000003160 ENSRNOT00000004235 3 1 1 80 X 19126357 19130933 GGTGCAACAATACTAGACCG 59 19126296 19126315 TCCAACAGAGTCTACGAGAG 58 NA Rattus norvegicus 81 LOC499796 ENSRNOG00000028112 ENSRNOT00000038906 2 1 1 80 3 36212514 36218473 GACACCATTGAGATATCCGT 57 36218514 36218534 TCTTCTCTTTCTCCTTCTCCT 58 NA Rattus norvegicus 81 Trank1 ENSRNOG00000021091 ENSRNOT00000028633 1 1 1 80 8 119605874 119614470 AAGGCCGATCAGAAATCTC 57 119614511 119614532 GTCGTTCCAGTAAGAATTTGAC 58 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000077871 3 1 3 85 12 47243900 47247339 TGCATCTCAGACCAAGACC 59 47247388 47247406 GTGAACTGATAGCGGACGA 60 NA Rattus norvegicus 81 Slc6a8 ENSRNOG00000057620 ENSRNOT00000092123 2 1 1 80 X 157133514 157133626 AACTGCTACAAGGATGCCA 59 157133452 157133471 GATGGAGAAGACCACAAAGC 59 NA Rattus norvegicus 81 AABR07055673.1 ENSRNOG00000048102 ENSRNOT00000075705 3 1 1 80 7 7675458 7675481 TACGAAGATCCTACTGATGGC 59 7675518 7675541 GTATAGGACAGAATTACCAAAGCC 59 NA Rattus norvegicus 81 AABR07037412.2 ENSRNOG00000047165 ENSRNOT00000073114 2 1 1 80 X 20224020 20225002 GGTCCATCCTAGAGAAACAG 57 20225045 20225063 CACCCTTCTCCATGTAGTG 57 NA Rattus norvegicus 81 Cthrc1 ENSRNOG00000004578 ENSRNOT00000006142 2 1 1 80 7 77966930 77966948 CCTCTGAGAATCCCAAGGT 58 77966989 77970732 GTAGGCACATCCCATTATACAG 59 NA Rattus norvegicus 81 Ccm2l ENSRNOG00000009191 ENSRNOT00000012187 2 1 1 80 3 148555770 148556631 GTTCCTTCTTATTGGGATGCG 60 148556673 148556691 ATACCCATGCTCTCCAGGA 60 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 2 2 2 80 7 91857357 91857379 TATCCTGATTACCAGATCCAAGC 60 91857415 91860638 CAGAGTTAGTACAATGTTGGCTG 60 NA Rattus norvegicus 81 Ephx3 ENSRNOG00000027319 ENSRNOT00000038961 3 1 1 80 7 14213256 14213367 TGTCCGACTTCCAGATTCTG 60 14213195 14213216 CTTCAAGTTCACAAGGACTCAG 59 NA Rattus norvegicus 81 RGD1564617 ENSRNOG00000050463 ENSRNOT00000072809 2 1 1 60 9 52393807 52393826 CATTCTGCAAGAAATGTGGG 58 52393848 52393867 TTGCCATTCTTGTATTGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf17 ENSRNOG00000021987 ENSRNOT00000035886 1 1 1 81 10 4256796 4257625 TGTGATCCAAGCATGACCA 59 4256733 4256751 AACAGACGACCAAGGTCAG 60 NA Rattus norvegicus 81 LOC100910928 ENSRNOG00000008499 ENSRNOT00000011225 1 1 1 60 7 9280226 9280244 TTGACACTCCTGGTTACAC 57 9280268 9280286 TGGTCCTGATGATGTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnb3 ENSRNOG00000002951 ENSRNOT00000003954 2 1 1 80 X 16377148 16378507 GAGACTGAGGTCATCATATTGG 58 16378545 16378566 AGAGCTCAATAATAGATCGCTG 58 NA Rattus norvegicus 81 Hemgn ENSRNOG00000009436 ENSRNOT00000042649 3 1 1 80 5 62016536 62016556 GAAGGACCAATCTCATCTGAC 58 62012790 62016495 GATCCAATGATGTCTGGAGC 59 NA Rattus norvegicus 81 Chrnb1 ENSRNOG00000014698 ENSRNOT00000019947 1 1 1 80 10 56402290 56402847 AACTCATCAGCCTGAACGA 59 56401312 56401331 TTAACCTGTAGTCGGTCCAC 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419,ENSRNOT00000088589,ENSRNOT00000090323 1 3 3 80 3 43352283 43352302 TCTCGAACAGAACAACTCAC 58 43352342 43352456 GTGAAATCTCTTCTTGTACCGA 58 NA Rattus norvegicus 81 Mrps11 ENSRNOG00000018531 ENSRNOT00000025008 2 1 1 84 1 140478232 140483147 CGCTTCAGCATTTACCCTC 59 140483195 140483213 GTGCAATTGGGACTTCCTC 59 NA Rattus norvegicus 81 Actc1 ENSRNOG00000008536 ENSRNOT00000011773 1 1 1 80 3 105508386 105509269 TCTTTCATTGGTATGGAGTCTG 58 105508327 105508346 TTTGCGGATATCGATGTCAC 59 NA Rattus norvegicus 81 Crabp1 ENSRNOG00000023633 ENSRNOT00000031175 1 1 1 80 8 59344894 59344912 ACGGAGATCAACTTCAAGG 57 59344956 59347502 CCAAGTGGGTAAACTCCTG 58 NA Rattus norvegicus 81 Xirp1 ENSRNOG00000037085 ENSRNOT00000055888 2 1 1 196 8 128708266 128710968 AGAGGCAGAAGAAGGATGG 59 128708088 128708106 ATGTGTTTGTAGAGACGGC 58 NA Rattus norvegicus 81 Kif1c ENSRNOG00000031364 ENSRNOT00000041493 2 1 1 80 10 57346736 57346755 CTGGAACTTTGCTCAGAAGG 59 57346796 57346940 AAGTCTTGTAGCCTCTTCTCC 59 NA Rattus norvegicus 81 Kif1c ENSRNOG00000031364 ENSRNOT00000041493 3 1 1 80 10 57324638 57324656 TTTAATGCCCGTGAGACCA 59 57324697 57325108 TTTGGGATTAATGATGGAGGTG 59 NA Rattus norvegicus 81 Fam65c ENSRNOG00000010791 ENSRNOT00000035463 2 1 1 80 3 164720155 164720174 AAAGACAGGTTCTGGAAGTG 58 164719684 164720113 GTGGGATGATCTCTTCAACC 58 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256,ENSRNOT00000042227 1 2 2 80 9 45005868 45067886 GGAAGAAATAATTCGGGAGATGAC 60 45005811 45005829 AACTTGCTTGGTTCCACCT 60 NA Rattus norvegicus 81 Atp6v1c1 ENSRNOG00000004846 ENSRNOT00000006917 3 1 1 80 7 77697545 77697563 AGTACATGGCTGATGTGCT 59 77697606 77698817 AAGTGACCAAGTCAACTCCA 59 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 2 1 1 67 1 280637443 280637461 ATCATTACGTGGTGGGAGC 60 280637491 280639441 TACCTGAGTTTCCGTAAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 1 2 2 80 10 90231204 90232775 AAACAACCTTATGAGCGTGG 59 90232817 90232836 TTACCCACACCCTCAATGAG 60 NA Rattus norvegicus 81 Phf6 ENSRNOG00000002276 ENSRNOT00000003091 1 1 1 80 X 158735116 158735138 TCTGATAATGAGAGTCTTGGTGG 60 158721184 158735077 AGAACACATCAGCTTTGTGC 60 NA Rattus norvegicus 81 Tagln2 ENSRNOG00000008301 ENSRNOT00000011208 3 1 1 80 13 90807973 90808295 TGGTTTCCTAAGAAATCCAAGG 58 90807914 90807934 TAACCCAATCACATTCTTGCC 59 NA Rattus norvegicus 81 Ly9 ENSRNOG00000025069 ENSRNOT00000035498 2 1 1 80 13 90016698 90020063 CTGCACATCTATGAGCAGC 59 90016636 90016656 GACAGTGCAGGAATCATTCTC 59 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 2 2 2 88 1 219441018 219441543 CTATGATGAATGCAAGAGACGA 59 219441592 219441610 CTACAATGGCTGCAATGGG 59 NA Rattus norvegicus 81 Pi4k2a ENSRNOG00000014675 ENSRNOT00000019874 3 1 1 81 1 261358254 261358275 TCTTCCAAAGATTTCAGACCCT 60 261358312 261358811 GAAACCAGGATCTTTCTTGAAGAG 60 NA Rattus norvegicus 81 LOC300308 ENSRNOG00000048230 ENSRNOT00000046378 3 1 1 124 7 20263466 20263485 CATTCCTACTCACCTGTCTG 58 20341537 20412663 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 Znrd1-as1 ENSRNOG00000020166 ENSRNOT00000027299 1 1 1 60 9 18490058 18490078 GAACAGGTGCAAATCAAAGAC 58 18490100 18490118 GCTCTATCAGTTCCCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684444 ENSRNOG00000045818 ENSRNOT00000071167 2 1 1 60 2 29247893 29247913 CTCACCTCAGAAGATATCCAG 57 29247853 29247871 GTTTAGCCAGCTTCTTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc125 ENSRNOG00000027410 ENSRNOT00000031385 2 1 1 80 2 30692039 30694457 TATGACAGGCTGAACTGTG 57 30694499 30694519 AGACTTGAGCATCTTTACCTC 58 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 3 1 2 82 19 19777432 19779369 CCAACAAGTCACAGCATGG 60 19771877 19771896 GTTGCTTAACACTGAAGGCA 59 NA Rattus norvegicus 81 Cyp39a1 ENSRNOG00000010519 ENSRNOT00000014051 3 1 1 80 9 19848918 19848936 CCTGTCTCATCCCGATCTG 59 19828522 19848877 TGAATCTTGTCTTTACCTGCAG 59 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000037315 ENSRNOT00000048323 2 1 1 60 9 117466653 117466672 ATGAGACCTGCAATCAAGGA 59 117466612 117466630 CCCACAGCTCTCCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atxn7l2 ENSRNOG00000028749 ENSRNOT00000037336 1 1 1 80 2 210996624 210996998 GCCTATTGACTTGCAAGATCC 60 210996564 210996583 CCACTAGCACATCAAAGTCC 59 NA Rattus norvegicus 81 Zc3h12d ENSRNOG00000016041 ENSRNOT00000065646 2 1 1 80 1 1965943 1969154 AATGACAGGTTCATGCCTC 58 1969198 1969216 CCTTGGCTTCTTGCTTAGG 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 3 2 2 81 16 9650715 9650738 CTACCTTCTCTATCAAATGCTGTG 59 9640819 9650678 ATTACTAGGCTTTAAGTCCCGA 59 NA Rattus norvegicus 81 Prkcsh ENSRNOG00000013360 ENSRNOT00000018009 1 1 1 80 8 23024472 23024490 CCTTTGATTTCGGTCCCTC 58 23024532 23024904 GGTAGACATACTCATTGGTGG 58 NA Rattus norvegicus 81 Gstm5 ENSRNOG00000049743 ENSRNOT00000072342 1 1 1 80 2 210687720 210687738 TATGTTTGAGCCCAAGTGC 59 210687781 210688051 GCAATCTTCTCCAAAGCCTC 59 NA Rattus norvegicus 81 Metap1 ENSRNOG00000012947 ENSRNOT00000017579 1 1 1 80 2 243754655 243758736 TGTTAATGTGGACATCACTCTC 58 243754596 243754614 TCATCCACATCTCCAACGA 58 NA Rattus norvegicus 81 Chp2 ENSRNOG00000019112 ENSRNOT00000025832 2 1 1 88 1 192171259 192171277 GATGAAGACGATGCCACAC 59 192171328 192171495 TAGAGCTGAAATGCAAAGCG 59 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 1 2 2 80 2 149006667 149010015 ATTTACAGCGTTTCCAAGGAG 59 149006607 149006628 TCTCAAATGTTCTGGAGAGGAC 60 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777,ENSRNOT00000003145 3 2 2 80 X 157862683 157862987 GATTTGGAAAGTGCACATCG 58 157863027 157863048 TTGGATTAGGAACAGAACTTGG 58 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095,ENSRNOT00000042077 3 2 2 80 19 21589369 21589388 ATCAAAGGCTTCACCTTCAC 59 21589429 21590132 GCTGACGATCTTGTTAAACAC 58 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 3 2 2 80 13 84611466 84612833 GTCCTGTCCCTGGAATTCC 60 84611404 84611424 ATCAGATTCAGGACACTCCTC 59 NA Rattus norvegicus 81 Zfp563 ENSRNOG00000030273 ENSRNOT00000066520 2 1 1 80 7 15422832 15424653 GGAGAAGTCTGAGAAGTGGA 59 15424694 15424714 ACTCGCTGAAGATTTCTTCAC 59 NA Rattus norvegicus 81 Eif1 ENSRNOG00000033765 ENSRNOT00000041033 1 1 1 80 10 88228321 88228340 AAGACCCTTACAACTGTCCA 59 88228380 88228515 GGCAAATTTCTTCTTAAACGCC 60 NA Rattus norvegicus 81 Rtn4rl2 ENSRNOG00000021513 ENSRNOT00000038250 1 1 1 117 3 72283072 72283090 ACTACATCTGTACCGGTGC 59 72274188 72282992 CAAGTCATCCTGTAGGTGGA 59 NA Rattus norvegicus 81 Ccnb1 ENSRNOG00000058539 ENSRNOT00000082846 1 1 1 80 2 30785824 30787593 TCAGACAACTGGAGGAAGAG 59 30785763 30785781 GGATGGCTCTCATGTTTCC 58 NA Rattus norvegicus 81 RGD1562485 ENSRNOG00000028847 ENSRNOT00000040332 1 1 1 60 X 96459936 96459957 AACTAAGAAGACACATCCAGAG 58 96459897 96459917 CACATTCTTTCCTCCCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd40lg ENSRNOG00000000871 ENSRNOT00000001162 1 1 1 80 X 159703845 159705750 GAAGATTGGATAAGGTAGAGGAG 58 159705789 159705808 CTTTGTTGCACCTCTTTAGC 58 NA Rattus norvegicus 81 Cox6a2 ENSRNOG00000019851 ENSRNOT00000026908 3 1 1 134 1 199624683 199624701 CTTAAGGTCCTCAGTCGGA 58 199624379 199624397 CATCCAGCAGTTAAGCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Bgn ENSRNOG00000055962 ENSRNOT00000085201 2 1 1 80 X 157323281 157323301 CTAGACCTGCAGAACAATGAC 59 157322721 157323239 CAGGACCAGAGCATAGAGG 59 NA Rattus norvegicus 81 Oas1h ENSRNOG00000057769 ENSRNOT00000085747 1 1 1 80 12 41220194 41220212 AAAGTTCCTGTGGAATCGT 57 41217294 41220153 TTCTCCTTACACAGTTGATACC 58 NA Rattus norvegicus 81 Ccdc170 ENSRNOG00000024280 ENSRNOT00000035962 2 1 1 82 1 41109630 41109648 GCTAGTCCACCTTGAGAGC 60 41109688 41112349 CTTTCTGAGTCTTTAGCTTTCTCTG 60 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 2 2 2 80 20 4539090 4539215 CATGACTGATGGCTTGCAC 60 4539028 4539047 CTGCCAATATCCAGCAAGTC 59 NA Rattus norvegicus 81 RGD1564915 ENSRNOG00000054673 ENSRNOT00000056461 1 1 1 60 2 194389683 194389704 TTATCCTTCGAGATTTCCTCCT 59 194389724 194389743 ATGAGCTGTTCTTCAGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnga2 ENSRNOG00000047540 ENSRNOT00000073066 3 1 1 92 1 69246932 69246950 GCCGGAGACTGGTATTACC 60 69245436 69246876 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Il18r1 ENSRNOG00000015027 ENSRNOT00000020194 1 1 1 80 9 47209745 47214362 AGACGAGACACTAACAGATGG 59 47214401 47214422 TCTTCTCCATTCTCAGGATGAC 59 NA Rattus norvegicus 81 Abhd12 ENSRNOG00000036934 ENSRNOT00000010641 1 1 1 80 3 146644771 146646861 CACTATTGGAGTCTGGCAC 58 146644709 146644728 GCATCCTCATACCACATCTG 58 NA Rattus norvegicus 81 Clic1 ENSRNOG00000029682 ENSRNOT00000068435 1 1 1 80 20 5045442 5048777 CTTCACATAGTCCAGGTGGT 59 5048820 5048838 CAAGTACCGATGCACTCCA 60 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 2 3 3 82 12 46801167 46801916 CATCTTGGATAAAGTGGTGACAG 60 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Aarsd1 ENSRNOG00000020658 ENSRNOT00000028047 1 1 1 80 10 89324461 89324480 TTACCATCGAGGGTGTTGAC 60 89324162 89324423 GAATCTTAATGACCTGAAGGTCAC 60 NA Rattus norvegicus 81 RGD1564883 ENSRNOG00000029115 ENSRNOT00000041210 2 1 1 60 7 59762791 59762809 GAGATTGTCAACATTGCCC 57 59762749 59762767 TTCCAGAAAGTTCTCTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfbpl1 ENSRNOG00000011320 ENSRNOT00000015270 1 1 1 80 5 61400248 61400956 GGAAGAAGGTCAAGCACTC 58 61400186 61400205 CCTGGACAGCTATATTGACG 58 NA Rattus norvegicus 81 Tceal3 ENSRNOG00000049020 ENSRNOT00000071874 1 1 1 60 X 107323657 107323675 AGGAAGAGCTGAGGAAGAG 58 107323699 107323717 TGTGCATCTCTTGGTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map1b ENSRNOG00000017428 ENSRNOT00000023460 3 1 1 81 2 29683171 29683192 GGACAAGGAAACTAAGAATGCA 59 29681379 29683130 CTTAGTGGTTCCTGGTCCTG 60 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025279 3 1 2 266 8 128842058 128842076 GAGGACTGGATCTGCTGTG 60 128842514 128842534 TGGCTGTTTAGACTTCTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 1 3 3 119 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Cacng3 ENSRNOG00000012362 ENSRNOT00000016632 2 1 1 80 1 192613966 192695044 CTGCTTAGAAGGAGCTTTCC 58 192695084 192695105 GCTGTATCCTGTTCATAGTCTG 59 NA Rattus norvegicus 81 Bmpr1a ENSRNOG00000052469 ENSRNOT00000079554 3 1 1 80 16 10760184 10761130 ATTACAGGAGGAATCGTGGAG 59 10760124 10760144 ACGCATGTCTTCATAAGATGG 59 NA Rattus norvegicus 81 Rnft2 ENSRNOG00000001124 ENSRNOT00000001486 1 1 1 80 12 43943872 43949229 AACATTCCACCTGAAAGAAGTC 59 43949269 43949288 CAGGCTCTCAAATACACCAC 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000047095 ENSRNOT00000074170 3 1 1 60 X 158569341 158569362 TCTGAGATTCACTATGCTTCCA 59 158569383 158569401 CACAGGACACAGGAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl27 ENSRNOG00000020674 ENSRNOT00000028060 3 1 1 80 10 89354005 89356277 ATGCCCACAAGGTACTCTG 59 89356321 89356339 TTTCAGTGCTGGGTCTCTG 60 NA Rattus norvegicus 81 LOC100363068 ENSRNOG00000047293 ENSRNOT00000049165 1 1 1 80 14 6193314 6193332 TGGATCCTTCCCAGAAGAG 58 6192927 6193271 CCCAGTAATAGCCTACAGCA 59 NA Rattus norvegicus 81 Smptb ENSRNOG00000028033 ENSRNOT00000014611 1 1 1 60 X 17486432 17486452 GTCTCCAACCTACTGTTTCTG 58 17486392 17486410 CCTCTGTGCTCATCTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aga ENSRNOG00000000108 ENSRNOT00000000120 2 1 1 80 16 41228314 41230023 CAGCCAAATTATTGGAGAAACG 59 41228255 41228275 CTGCTCTAAGAAATCAGGTGG 59 NA Rattus norvegicus 81 Hypm ENSRNOG00000021452 ENSRNOT00000004790 2 1 1 60 X 13989622 13989640 AGGTTCCACAACTTCTGAC 57 13989663 13989682 CAGGATGTAGTCGGTAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem189 ENSRNOG00000060571 ENSRNOT00000090493 3 1 1 134 3 164377556 164378120 CTGTATCACCACAGGTTGG 58 164377440 164377458 TACTTGATCTTCTGGGCCC 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000089893,ENSRNOT00000011978,ENSRNOT00000078703 1 3 3 81 3 159949378 159949396 GAGGTCAAGCTACGAGGAC 60 159949441 159950062 GGAGGTGATCTGCTGAGAC 60 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979,ENSRNOT00000001135,ENSRNOT00000001138 1 3 3 83 20 5162116 5162136 GAGACGTTCAGTTACTCTGAC 58 5161531 5162077 CTCCTCATACATCAGAATCATTCTC 59 NA Rattus norvegicus 81 Shox2 ENSRNOG00000012478 ENSRNOT00000016843 3 1 1 80 2 164121010 164121031 AGTTTGAAGCTTGTAGAGTTGC 60 164119307 164120970 CGTTGCAATGACTATCCTGC 60 NA Rattus norvegicus 81 AC133270.1 ENSRNOG00000031651 ENSRNOT00000051584 2 1 1 80 9 44010410 44010430 ACAGAAGAGGACAAATTCACC 58 44010471 44013438 TATGAACATTGTGCTCCTGC 59 NA Rattus norvegicus 81 Vnn3 ENSRNOG00000039865 ENSRNOT00000021896 2 1 1 80 1 22656762 22660828 AGACCCTAAGAGGTTTGGC 59 22656700 22656724 GCCACAATATAGATAGAGTTCTCCT 60 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111 1 1 2 80 3 167999015 167999618 TTCAAGACACTAGTTTCGCCT 60 167989558 167989577 AGTAGTGGGTGAATTCTCGG 59 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 3 2 2 80 1 71690145 71690580 ACCCTTAAAGTACTCGTGGTC 60 71690085 71690105 ACGTTGGTTCTGAATCAACTC 59 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000055245,ENSRNOT00000080305 2 2 2 80 2 266415040 266426192 CCAGTCTAATGGTGACCTGG 60 266426235 266426253 GTCGGTCCATCTACATGGG 60 NA Rattus norvegicus 81 Evc ENSRNOG00000007564 ENSRNOT00000010541 3 1 1 80 14 78230555 78232477 GCTCATAGACAATATGGGAGC 59 78232518 78232537 CTGGAACACTTAAGCTGGTC 59 NA Rattus norvegicus 81 Lrig3 ENSRNOG00000007654 ENSRNOT00000032786 3 1 1 80 7 69247203 69248326 ATTGAGGCAACTAATTCTCCAG 59 69248366 69248385 TGTTCCAATGTGTCCAAACC 59 NA Rattus norvegicus 81 Olr75 ENSRNOG00000050328 ENSRNOT00000049036 2 1 1 60 1 168205024 168205044 TTCACATCGAAACTGACAACC 59 168205066 168205084 CATGAGCAGACTCTAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911393 ENSRNOG00000046062 ENSRNOT00000073176 1 1 1 60 X 119162422 119162441 GAATTCAATCACCCAGTGGA 58 119162381 119162402 CCCTTCATATAAGGTTCCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560398 ENSRNOG00000037566 ENSRNOT00000056932 3 1 1 84 12 47552058 47555512 CAGAACCTGGTGTTGATGG 59 47555559 47555578 GAATGGGCTTGTAGACACAG 59 NA Rattus norvegicus 81 Odf3l1 ENSRNOG00000027109 ENSRNOT00000038347 2 1 1 80 8 61518350 61518370 CTACATAGCCCATGACATCTC 58 61517635 61518310 TCAGTGATCCGTTTCTTAGTG 58 NA Rattus norvegicus 81 RGD1308775 ENSRNOG00000004112 ENSRNOT00000005514 1 1 1 80 14 84145947 84145965 CAAGAGCCATTTGTCTCGG 59 84144106 84145903 TCAGAGGCTTTCATCTCCA 58 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256,ENSRNOT00000000824 2 2 2 80 12 50312380 50312398 GGTTCCAAGGTACAGGGAG 59 50308862 50312336 CTGGTCTAACAGGGTCTGG 59 NA Rattus norvegicus 81 Apex2 ENSRNOG00000000166 ENSRNOT00000068703 1 1 1 80 X 23148701 23148722 CCTTTAAGATGCGCTTCTATCG 60 23148761 23149464 CCAGGATTATCACATGACTGC 59 NA Rattus norvegicus 81 Apex2 ENSRNOG00000000166 ENSRNOT00000068703 2 1 1 80 X 23148694 23148712 CGGCTGACCTTTAAGATGC 59 23148756 23149457 TATCACATGACTGCCAGCT 59 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 2 2 2 80 3 157009812 157013428 AAGTTAAGCCTGTGGAACG 58 157009750 157009771 GCCGGTTACTGTTCTTATACTC 59 NA Rattus norvegicus 81 Henmt1 ENSRNOG00000042814 ENSRNOT00000066924 3 1 1 81 2 211745914 211746272 AACTGGACCATACATTCATACC 58 211746314 211746332 GTTGATGGTGATGGTGGTG 59 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 2 2 2 80 8 61703044 61703062 CATTGTGAAGCTGAAGCCT 59 61703104 61703647 TCTCGAACATTCAAGATGGTG 59 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 2 2 2 80 2 27976330 27976348 ATCATGCCTTGGAACACCT 59 27976391 27977924 ACAGGACAGTTTGTCCAGAG 60 NA Rattus norvegicus 81 Gstp1 ENSRNOG00000018237 ENSRNOT00000024601 2 1 1 80 1 219293395 219293414 TTGAAGATGGAGACCTCACC 59 219293006 219293356 CTTTCCCATAAAGCCCTAAAGAG 59 NA Rattus norvegicus 81 Pes1 ENSRNOG00000004515 ENSRNOT00000005996 1 1 1 80 14 84224506 84224524 TATACCACTCTCCTGGGCT 59 84224566 84224680 TTGACTTTCAATCTTGGGTGG 59 NA Rattus norvegicus 81 Pms1 ENSRNOG00000004076 ENSRNOT00000043714 2 1 1 80 9 53134220 53134240 ACCTTCAAACTCTCACAACCT 60 53134282 53142148 TTGTCACTACCACCTCTGC 59 NA Rattus norvegicus 81 Mast4 ENSRNOG00000027002 ENSRNOT00000074941 2 1 1 80 2 32893332 32895185 CATCAGTGATGAAATCAACTGG 58 32893273 32893292 CTGAGGAGCAAGGTAATCAG 58 NA Rattus norvegicus 81 Slc25a24 ENSRNOG00000020470 ENSRNOT00000027765 1 1 1 82 2 211952307 211953846 GTCATGATGCAGGTTCACG 59 211953892 211953910 GAACGGATTCCTCCTTCCT 59 NA Rattus norvegicus 81 Slc25a24 ENSRNOG00000020470 ENSRNOT00000027765 3 1 1 83 2 211952306 211953845 GGTCATGATGCAGGTTCAC 59 211953892 211953910 GAACGGATTCCTCCTTCCT 59 NA Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 2 2 2 81 9 43077781 43078064 ACACGTACACTGACAATCG 58 43078109 43078127 TTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 Trpv4 ENSRNOG00000001195 ENSRNOT00000001586 3 1 1 80 12 47729897 47729916 TGTTCATGAAGAAATGCCCT 58 47729956 47731140 GCACTGAGTAGATGAAGTAGAG 58 NA Rattus norvegicus 81 Col11a1 ENSRNOG00000023148 ENSRNOT00000068413 1 1 1 80 2 216924028 216924046 GTGACCATTACAGTCCCGA 59 216924087 216930657 CAGGTGCATACTCATCTATGTG 59 NA Rattus norvegicus 81 P3h4 ENSRNOG00000015787 ENSRNOT00000021322 3 1 1 80 10 88321353 88321371 TACCACAACCAGACCTCTG 59 88319679 88321312 CAGTTCCATCTCATCATCTGAC 59 NA Rattus norvegicus 81 Hint2 ENSRNOG00000015866 ENSRNOT00000021387 2 1 1 80 5 59150694 59150818 ACCAACAGCTTCTAGGACAC 60 59150633 59150654 CAAGTCGATACCCATCTTTCAG 59 NA Rattus norvegicus 81 Dmrt3 ENSRNOG00000016284 ENSRNOT00000021792 3 1 1 80 1 243590320 243601267 TAAGCCAGATTTGACTGAAGAC 59 243601306 243601326 GTGTCTTTGTCACTGAAGGAC 59 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000055683 2 1 2 81 10 76159832 76160372 CACATAGAAGGCTCTCAGCA 60 76159770 76159789 TATTGGTGAGGTTCAGCTCC 60 NA Rattus norvegicus 81 Slc25a39 ENSRNOG00000020994 ENSRNOT00000028496 3 1 1 80 10 90354663 90354681 CTGTGCCCAAATGGTACTC 59 90353974 90354620 CTTCACAAAGGCATCCAAGG 60 NA Rattus norvegicus 81 Tmem115 ENSRNOG00000021899 ENSRNOT00000032263 1 1 1 76 8 116290924 116290942 ATCACTATCAGCCTCCCAG 58 116293658 116293676 TCATTGAGAGCCTTCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmsb4x ENSRNOG00000047931 ENSRNOT00000071708 1 1 1 85 X 28594521 28594542 GAAGAAGACAGAAACACAAGAG 57 28594984 28595002 CTCATTACGATTCGCCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gmcl1l ENSRNOG00000030417 ENSRNOT00000048887 3 1 1 60 X 17707671 17707690 GCTCCTACTATCTAGCAGCA 59 17707630 17707651 TGGAAACATTCTGTCTTTACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006688.1 ENSRNOG00000030934 ENSRNOT00000048735 2 1 1 60 1 248213693 248213711 CATGTCTGTCTCATCGTCC 58 248213651 248213669 AGTTGTTGCGAAGTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070669.1 ENSRNOG00000056409 ENSRNOT00000082411 3 1 1 82 8 79419415 79419433 GAATGCCAGAGAAGTTGGT 58 79420524 79420542 TATCAATGTCAGCTGCCGA 59 NA DesignNoJunction Rattus norvegicus 81 Zmat5 ENSRNOG00000007849 ENSRNOT00000010332 2 1 1 100 14 84953926 84959955 GACATGTTCCGAGATGCAG 59 84961760 84961778 CAGTTGGAGCCAAAGTCAC 59 NA Rattus norvegicus 81 Olr892 ENSRNOG00000029961 ENSRNOT00000046001 3 1 1 60 7 5106019 5106037 GAGATTCCCTTCCGTACAG 57 5105977 5105995 AATCATGTGGGATGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr727 ENSRNOG00000047981 ENSRNOT00000043370 3 1 1 72 3 78852654 78852673 ATGACCATATCCACAAAGCA 57 78852797 78852815 AGATGAGCATGTTACCTGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000080541 3 1 2 81 14 85311575 85312276 CCAGAAGTCTTGAGGAGTGG 60 85312320 85312338 CAGATGTCGTAGACCAGCA 59 NA Rattus norvegicus 81 Hps6 ENSRNOG00000018433 ENSRNOT00000024898 2 1 1 60 1 265762933 265762951 ACAGACAGAGTACACCTCC 58 265762972 265762993 CTAGGTCTTCCTCATTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000064734 3 1 3 91 20 4918826 4919021 GAAGAGAAACACAGGTGGGA 60 4918523 4918541 CTTCACAATCTGCGAGGGA 60 NA Rattus norvegicus 81 Adrb1 ENSRNOG00000017002 ENSRNOT00000022813 3 1 1 60 1 277538583 277538601 CGTGGTGAAAGCTTTCCAC 60 277538623 277538643 CCAGTTGAAGAAGACGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx10 ENSRNOG00000017944 ENSRNOT00000024129 1 1 1 86 1 219243702 219243720 AGATAGTGGGCATGGACAC 59 219243769 219244072 GGAAGGCGTACCTGTATCTC 60 NA Rattus norvegicus 81 Creg2 ENSRNOG00000013991 ENSRNOT00000046557 2 1 1 80 9 46365402 46368821 AAGTTGAAATTGAGCTCTCAGG 59 46360163 46360183 GAAGAACCATTCATACTGGCG 60 NA Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 2 2 2 80 1 141082497 141082516 TCCATGGCTATAACTCCCTG 59 141082558 141084949 TGAGAGGCACGTATATCCTG 59 NA Rattus norvegicus 81 Pts ENSRNOG00000009250 ENSRNOT00000012434 3 1 1 80 8 54959421 54959441 GAAATGCAACAATCCGAATGG 59 54957617 54958110 CCTGTAACCGGATCGATCTC 60 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822,ENSRNOT00000091791 1 2 2 80 8 132136637 132136657 GATCCAATGACATCCTACCGT 60 132136694 132139382 GACATTCAATACAACCTCTACACC 60 NA Rattus norvegicus 81 Isoc2b ENSRNOG00000016829 ENSRNOT00000022620 1 1 1 80 1 72539300 72539318 GTCTTCCTGTCCACTAGCG 60 72539358 72544932 CTTCTGAATCTCCTTGAACTGTG 60 NA Rattus norvegicus 81 Kcnj16 ENSRNOG00000004713 ENSRNOT00000006238 3 1 1 60 10 99389048 99389066 CACCAGTCCAGAAGTTCCT 59 99389089 99389108 CATCATGAAACCTGTGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm15 ENSRNOG00000047499 ENSRNOT00000070994 2 1 1 66 2 210085907 210085928 GCCAAATCTGAAGAAGATTACC 58 210081968 210081986 TTCATCCGATGTTCACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rbm15 ENSRNOG00000047499 ENSRNOT00000070994 3 1 1 100 2 210085944 210085962 TCAGCAGTTCCTGGATTCC 59 210081968 210081986 TTCATCCGATGTTCACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Pros1 ENSRNOG00000048723 ENSRNOT00000073689 3 1 1 80 7 1255298 1258670 AGAAAGACTGCAAAGATGTGG 59 1258711 1258730 CTCCTGGAATGTTCTTGCAC 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000089657,ENSRNOT00000091344,ENSRNOT00000049310 3 3 3 88 20 4791227 4791245 CAGATACCTGGAACTCGGG 59 4790159 4790177 CATCACCTTCAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tnpo1 ENSRNOG00000014999 ENSRNOT00000020543 2 1 1 80 2 29082084 29084226 CATAGTCGAGTACATGCTTCAG 59 29082025 29082045 AAAGTCAGCCAGAATTCACAG 59 NA Rattus norvegicus 81 Nucb1 ENSRNOG00000020889 ENSRNOT00000028390 1 1 1 80 1 101491741 101491760 GTCATCAACGTGCTAGAGAC 59 101490482 101491702 CTTTCCACTCTTAATGTCCTCAG 59 NA Rattus norvegicus 81 Itga9 ENSRNOG00000043167 ENSRNOT00000015113 1 1 1 80 8 127455648 127478169 TGCTTTCCAGTGTTGATGAG 59 127478210 127478230 TGGAGATGGAGATGTTCAGAG 59 NA Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000001523 3 1 2 81 12 46872920 46872938 GGTTGACTTTGTGCACCAG 60 46872982 46873334 GTAACCGGAGTATACCTGCA 59 NA Rattus norvegicus 81 Cracr2b ENSRNOG00000050158 ENSRNOT00000071831 2 1 1 87 1 214008293 214008311 AGATGTGGTTGCTGTCTCC 60 214008362 214008591 CCTCAGATTCAGCTCCCTC 59 NA Rattus norvegicus 81 Olr165 ENSRNOG00000048219 ENSRNOT00000072602 2 1 1 60 1 169770084 169770103 TTTCCTTCCCATTCTGTTCC 58 169770043 169770061 TAGAGCAGTCCACAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 3 2 2 80 20 5007094 5007113 TGAGCATCACTAGAGCTGTG 60 5007154 5007292 CTACTTCCAAGAAACAGTCGG 59 NA Rattus norvegicus 81 Myl3 ENSRNOG00000020955 ENSRNOT00000028458 1 1 1 80 8 119033873 119035104 AAACAGGAAGAGCTCAACTC 58 119035145 119035165 GTCTTTGTTCTTGGAGATGTG 57 NA Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069 3 1 2 89 5 154221703 154221723 ATGTTTCCTTGAACCCTTCAG 59 154219101 154221658 GATCTTCACTGTACTTCATTACCTG 59 NA Rattus norvegicus 81 Trim28 ENSRNOG00000027487 ENSRNOT00000029996 1 1 1 80 1 65545733 65545942 CATTGTCAAGGAAGAAGAGACAG 60 65545675 65545693 AACACAGGCTTGGTTTCAG 59 NA Rattus norvegicus 81 Wscd2 ENSRNOG00000053045 ENSRNOT00000080783 1 1 1 81 12 48817695 48828543 TGGAAAGGCAAAGAATGGC 59 48817632 48817650 CAAACTTGAGCCAGTCCAG 59 NA Rattus norvegicus 81 LOC100909857 ENSRNOG00000015677 ENSRNOT00000021036 3 1 1 92 5 156734411 156734429 AAGAAGTCAGCCTACTGCC 59 156721445 156734355 TTCTACGTTGCACCCAGAG 60 NA Rattus norvegicus 81 Apba1 ENSRNOG00000014928 ENSRNOT00000020123 1 1 1 80 1 241793700 241794818 CAGAATGGAATTATCTGTAGCCTC 59 241794856 241794875 TTCAATGATCCGATGTCCCA 59 NA Rattus norvegicus 81 Zswim3 ENSRNOG00000015525 ENSRNOT00000021052 2 1 1 84 3 161272642 161272660 CTTCATTGTCAGGGACTGC 59 161272706 161285318 CTGCACATATAGGATGTCCTC 58 NA Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000081724 2 1 2 80 1 64851913 64851933 TTACAGGATTAAACTGGGCAC 58 64851973 64852632 TAAGATGAGGGAACTGCTGAG 59 NA Rattus norvegicus 81 Man1b1 ENSRNOG00000012559 ENSRNOT00000016846 3 1 1 80 3 2557728 2559345 GAAGCAAGAATTTAAGGAAGCC 58 2559385 2559404 TCAAACAGGTTGACATCGAC 59 NA Rattus norvegicus 81 Gstm3 ENSRNOG00000019058 ENSRNOT00000025800 2 1 1 80 2 210763564 210763582 GTATGTTTGAGCCCGAGTG 59 210761803 210763520 AGATCTTCTTCAGGCCCTC 59 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186,ENSRNOT00000038898 3 2 2 80 1 73394441 73394459 ACCCACCTGATAAAGACCC 59 73394275 73394399 TCCAGGATGTAGTATCCTTCC 58 NA Rattus norvegicus 81 Pole3 ENSRNOG00000055277 ENSRNOT00000089792 1 1 1 82 5 78383843 78383861 TCAACATCTCCAAGGAGGC 59 78383469 78383798 GTTATTGGCACAGGATGTGG 59 NA Rattus norvegicus 81 Larp6 ENSRNOG00000012438 ENSRNOT00000017147 1 1 1 80 8 65625321 65630886 TCAAGAAGGTGAAACACCTC 58 65630929 65630947 CATTCAACTCCAGGGTGAC 58 NA Rattus norvegicus 81 Rnf7 ENSRNOG00000011663 ENSRNOT00000015821 3 1 1 95 8 104335578 104335596 TCCCTCAAGAAGTGGAACG 59 104330023 104335519 AAGACAGGCATCCATCACC 60 NA Rattus norvegicus 81 Pold4 ENSRNOG00000018765 ENSRNOT00000025507 3 1 1 81 1 219482152 219482363 TTGCACAGGTATCACAAGG 58 219482408 219482426 CACTTGGTACACCTCTACG 57 NA Rattus norvegicus 81 Ccdc15 ENSRNOG00000032180 ENSRNOT00000040901 3 1 1 81 8 39829626 39829644 AGGCCATAGTACCAGTTGG 59 39824493 39829581 ATGTATGCTGAAGTGTGCG 59 NA Rattus norvegicus 81 Pxylp1 ENSRNOG00000012480 ENSRNOT00000017085 3 1 1 80 8 104740227 104740245 CAGGTACCCACTGTATGCC 60 104730470 104740183 TGATATGGCTTCCTGCTGG 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000048341 ENSRNOT00000071278 1 1 1 83 8 38396581 38397230 GCTTCCTACAAGCTCTGAC 58 38397273 38397295 CTTTACAGGTAGAGTATCCTGTC 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 2 1 8 61 20 4389044 4389478 TCATCTGCTACTCCCAGGA 59 4389001 4389019 GCTTCTACAGTCCACAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dph5 ENSRNOG00000013719 ENSRNOT00000018367 3 1 1 86 2 218846040 218853821 GTTTACAGTTGTACAGGTTTGG 58 218853867 218853886 TCACCTTGTCAAAGAAGCTC 58 NA Rattus norvegicus 81 Notch4 ENSRNOG00000000442 ENSRNOT00000000513 1 1 1 80 20 4343065 4343467 GATGAGCCAAGGTGTAGAG 57 4343511 4343529 CGACAGAAATAGGAGGAGC 57 NA Rattus norvegicus 81 Klhl25 ENSRNOG00000010959 ENSRNOT00000014553 1 1 1 71 1 137341211 137358982 GGTGGATACACAATGTCAGTC 59 137341160 137341178 GATGTTCATGGAGCCTGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Map3k6 ENSRNOG00000008936 ENSRNOT00000012463 3 1 1 80 5 151447495 151447782 ACCACTATCCAAACGCTCC 60 151447825 151447844 GTAGACGAGGTCATCCTGAG 59 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000058102 ENSRNOT00000074529 2 1 1 77 8 40707282 40707302 GCTACTCCTCTGTCATAACCC 60 40707479 40707498 TCATGCATTCAGCATGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997,ENSRNOT00000080257 2 2 2 86 3 2717919 2717937 AGACTACGTCAAGTTCGCC 60 2717719 2717869 CAGTCTCTACCCAGAAGGC 59 NA Rattus norvegicus 81 Frmpd1 ENSRNOG00000012546 ENSRNOT00000016839 3 1 1 80 5 60825636 60827485 GCTACTCTGATGCTACAGGA 59 60827525 60827546 ATTGATGATCTGGCTAATCCCA 60 NA Rattus norvegicus 81 B3gat1 ENSRNOG00000007142 ENSRNOT00000009825 3 1 1 81 8 27800473 27801084 CAAACTGTACCAAGATCCTGG 59 27801127 27801145 TCAGTGAAGCCCTTCTTCC 59 NA Rattus norvegicus 81 Kif12 ENSRNOG00000007080 ENSRNOT00000010040 3 1 1 81 5 79005800 79005818 CTCGCATACCTTGAACCAG 58 79005559 79005755 TACCTGCTGAGAAGTTGGG 59 NA Rattus norvegicus 81 AABR07069942.1 ENSRNOG00000049004 ENSRNOT00000072871 2 1 1 60 8 42793205 42793226 TGTTTCTTGTACACAGTGATGG 59 42793166 42793186 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bsx ENSRNOG00000024438 ENSRNOT00000028909 3 1 1 183 8 45063949 45063967 TTTCTGACTCGCAGCTCTC 60 45065121 45065139 GCTTTGGGTTCGTCTTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tnfsf8 ENSRNOG00000048321 ENSRNOT00000072920 2 1 1 80 5 79690721 79690740 TCATTCTGGTCCTGGTAGTC 59 79670493 79682591 AGCAATTTCCTCCTTTAAGGG 58 NA Rattus norvegicus 81 Bcar3 ENSRNOG00000013737 ENSRNOT00000065111 1 1 1 80 2 226674439 226674457 CAAACAGCCATCCTCTACG 58 226674500 226674773 TGGGACATATGTCGACTCTC 59 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 1 2 2 80 16 73960387 73961932 TTTCTGTCTTTGAGGTTGATGG 59 73960328 73960347 GGTCAAGAAACAACTTTGCC 58 NA Rattus norvegicus 81 Ptbp2 ENSRNOG00000010827 ENSRNOT00000015036 2 1 1 80 2 223267104 223267542 ACCCTCTTCGGTGTTTATGG 60 223267043 223267062 GGCCATTTGTATCAGAGCAC 59 NA Rattus norvegicus 81 Bend3 ENSRNOG00000046505 ENSRNOT00000071494 1 1 1 127 20 48249913 48249931 CTCCACAATTCCAGCAAGC 60 48265293 48265311 GAACTGTTCTCACGGTTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912012 ENSRNOG00000004540 ENSRNOT00000006055 1 1 1 82 8 132241276 132241294 CTTCTCCTTCCTGTCCCAG 59 132241338 132244550 TCACCAAATCTTTCTTGGCAG 59 NA Rattus norvegicus 81 Tnks ENSRNOG00000011625 ENSRNOT00000015813 2 1 1 80 16 61062421 61062439 CTCAGTCATCGGTAGACCA 58 61062483 61066520 TCTGGATATGCCTGTTCCC 59 NA Rattus norvegicus 81 Hmgcs1 ENSRNOG00000016552 ENSRNOT00000023554 1 1 1 80 2 52442121 52442309 CATCACTTAGCCAACTATATTCCC 59 52442344 52442366 TTCATCCACTCTGACTAGATACC 59 NA Rattus norvegicus 81 Hmgcs1 ENSRNOG00000016552 ENSRNOT00000023554 3 1 1 80 2 52441378 52441396 GTTCTCTTACGGTTCTGGC 58 52441440 52442017 TCAAGAGCAGATCCTGGTG 59 NA Rattus norvegicus 81 Hace1 ENSRNOG00000000327 ENSRNOT00000000365 1 1 1 80 20 50726197 50726461 GTGCTTTGTGAATAGAAATCCC 58 50726501 50726520 AATCTCGACATCAGTTCAGG 58 NA Rattus norvegicus 81 C2cd4b ENSRNOG00000009106 ENSRNOT00000012048 2 1 1 101 8 73593648 73593666 GAAGGAGTCGCTCTTCCTC 60 73593731 73593749 AGCTCAGAATCTGAGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365,ENSRNOT00000087718 2 2 2 80 20 47541955 47541975 AAGACAGCAACAACATCACAG 60 47542016 47543791 CAAACACTTCAGCCATCGTC 60 NA Rattus norvegicus 81 RGD1564597 ENSRNOG00000031703 ENSRNOT00000040710 2 1 1 60 8 108260814 108260838 CCCAACTATAAGCTTATTACTCCAG 59 108260778 108260798 AGGAACCTCGAATCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Metap1d ENSRNOG00000061587 ENSRNOT00000084797 3 1 1 80 3 58150833 58157936 CACAATCAGCCACATAACTCG 60 58157976 58157996 TGAAAGTACGATCCTATCCCG 59 NA Rattus norvegicus 81 LOC100361793 ENSRNOG00000058151 ENSRNOT00000083064 1 1 1 128 20 11633987 11634005 TACCAGATAGCCTGCTGTG 59 11633877 11633895 AGATGACTGACAGGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361793 ENSRNOG00000058151 ENSRNOT00000083064 2 1 1 129 20 11633987 11634006 ATACCAGATAGCCTGCTGTG 59 11633877 11633895 AGATGACTGACAGGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685619 ENSRNOG00000029470 ENSRNOT00000049468 3 1 1 60 3 162165157 162165175 CTGAAGAGTTACGGTGCCT 59 162165115 162165135 CCTCATCTAACTTCTTCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wasf1 ENSRNOG00000047476 ENSRNOT00000073091 1 1 1 80 20 48473714 48473734 TTAAGAACGAGCTGGAATGTG 59 48468981 48473678 CAGCATATTTACTTAGGCTACTCAG 59 NA Rattus norvegicus 81 Pdik1l ENSRNOG00000016536 ENSRNOT00000022141 3 1 1 83 5 152499072 152503714 CCCTTTATTTACAGCTTGTAGAGAC 60 152499013 152499034 TCACAAACCACAAATAGTAGGC 59 NA Rattus norvegicus 81 RGD1563705 ENSRNOG00000034052 ENSRNOT00000047247 2 1 1 60 8 118378135 118378153 TTGGATTTGGTCGCAAAGG 59 118378093 118378111 ACCACCTTAAAGCGGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdhb ENSRNOG00000007967 ENSRNOT00000010593 2 1 1 80 5 159499500 159499518 AAGAAGGATGAGTCCCAGG 58 159499562 159501992 CTCATACAATCCGTCCAGC 58 NA Rattus norvegicus 81 Sim1 ENSRNOG00000037600 ENSRNOT00000057010 3 1 1 80 20 55609971 55637042 ACTACGTCCTCACAGACAC 59 55637085 55637104 AGGAGAAAGTGGGCTTAGAG 59 NA Rattus norvegicus 81 LOC100910894 ENSRNOG00000050769 ENSRNOT00000072544 3 1 1 60 20 1124396 1124417 CACAGTTCCTCAGTATGTTGAC 59 1124435 1124456 CTGTCCATATGAAATGTAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1193 ENSRNOG00000028864 ENSRNOT00000050206 2 1 1 60 8 21305371 21305391 GGAATCTGCTCATCATTCTGG 59 21305412 21305431 AAGTACATGGGAGTATGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 3 3 3 85 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155169 155187 ACAAAGACAGCCAAAGGTC 58 NA Rattus norvegicus 81 Vdac3 ENSRNOG00000019277 ENSRNOT00000026197 1 1 1 80 16 74303672 74305521 CCAAACACAGGGAAGAAGAG 59 74305563 74305582 TATGTCAACGTTACTGCCCA 60 NA Rattus norvegicus 81 Tyrp1 ENSRNOG00000029318 ENSRNOT00000046503 2 1 1 80 5 98404005 98404026 CAGAAATGTTTGTTACTGCTCC 58 98404062 98405072 CAGATACAGTAAATTCCTGACCTG 59 NA Rattus norvegicus 81 Olr1671 ENSRNOG00000000726 ENSRNOT00000000953 2 1 1 85 20 399108 399126 GTAACACCTAGCCTCAACC 58 398896 399059 AAGGTATTTCTACGCAGCC 58 NA Rattus norvegicus 81 LOC102550306 ENSRNOG00000047596 ENSRNOT00000071825 1 1 1 80 3 151548758 151548848 ATGGCTTTCAGGATGAATCAG 59 151548698 151548716 ACAGATGAAGGGTCCTGTG 59 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000065497,ENSRNOT00000083474 1 2 2 88 5 156683632 156683650 TCTCAAAGGGAGCAGATGG 59 156682869 156683581 GGATCCTGCCGAGATATTCC 60 NA Rattus norvegicus 81 Chrnb3 ENSRNOG00000012448 ENSRNOT00000016656 2 1 1 80 16 68877636 68880230 CTTCATCAGCCAGGTAGTG 58 68877574 68877593 GCTATCAGAAAGAGCCACAG 59 NA Rattus norvegicus 81 Chrnb3 ENSRNOG00000012448 ENSRNOT00000016656 3 1 1 82 16 68877635 68880229 TTCATCAGCCAGGTAGTGC 60 68877571 68877591 GAAGCTATCAGAAAGAGCCAC 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000058030 2 1 2 63 16 75599458 75599479 GGATCCATTACCTTCTCTTCTC 58 75589654 75599434 TTGCTAAAGGCAGAAAGGG 58 NA DesignRelaxed Rattus norvegicus 81 Cbln4 ENSRNOG00000004372 ENSRNOT00000005866 3 1 1 80 3 170036065 170039508 TTGATCAGATCCTGGTTAACGT 60 170036006 170036026 AACTGTAGATCCCTTTCCTCG 59 NA Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051 3 1 2 81 16 70663162 70663182 AACAACAAGCTACTGAAGGAG 58 70661797 70663122 GTTCCAGTTCTTCCTTCTTCTC 59 NA Rattus norvegicus 81 Slc31a1 ENSRNOG00000014475 ENSRNOT00000019544 2 1 1 88 5 78246045 78246065 CCTATGACCTTCTACTTTGGC 58 78246115 78247630 AAAGCTCCAGCCATTTCTC 58 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113,ENSRNOT00000064400 2 2 2 103 3 171780713 171780732 TTTGAAGAACTGGGTGAGAG 58 171780796 171781339 CCATGACTTCTCTGACATCAG 58 NA Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 1 2 2 61 5 78262702 78262720 GCTCGATGACATTGAGGAG 58 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Frmd3 ENSRNOG00000006503 ENSRNOT00000065792 1 1 1 80 5 90094329 90094350 AGTTGCTAAAGAGGTGGTAGAG 60 90080224 90094292 CTCTGAGTAATGTTGACTCTGTG 59 NA Rattus norvegicus 81 Api5 ENSRNOG00000009689 ENSRNOT00000013914 1 1 1 80 3 83321737 83321755 GCAGGTCCTCCCTAATCTC 59 83320500 83321696 GCCAACAACTTTAATACCTCCA 59 NA Rattus norvegicus 81 Extl1 ENSRNOG00000016776 ENSRNOT00000022522 1 1 1 80 5 152580021 152580039 AGACCCAGTTTCTGTGGAC 59 152579322 152579977 TCCGGTCCTGAATGATCTC 59 NA Rattus norvegicus 81 Lrit1 ENSRNOG00000012790 ENSRNOT00000017773 1 1 1 81 16 14309253 14309271 GAGCTACTGGATACGTGGG 59 14309315 14311752 CCTGAAGCCCTAAGACTAGC 60 NA Rattus norvegicus 81 Fbxo25 ENSRNOG00000042464 ENSRNOT00000065526 1 1 1 80 16 80780913 80781637 GGTCGAGCTCAACAAACAG 59 80780851 80780870 CGGTACAGGATGTTGTTCAG 59 NA Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000079849 3 1 2 82 5 99102649 99102667 CCTGGAGACCTTGAAAGCT 59 99102708 99103021 CTTGTAGTTTCCACATCCTAAGTC 59 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 3 2 2 80 5 59069159 59069263 AAGGAGACACTGAAGTATTCCC 60 59069100 59069118 CGAAGGCTTGGACATTGAG 59 NA Rattus norvegicus 81 Nr4a3 ENSRNOG00000005964 ENSRNOT00000008302 2 1 1 80 5 63793268 63804036 GATTACTCCAGATACTGTCCCA 59 63804075 63804095 CAGAAGGTTGTAGAACTGCTG 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316,ENSRNOT00000017106,ENSRNOT00000090646 3 3 3 80 16 74787388 74787497 GTCATTCGAAGCTGAAGGG 59 74787541 74787559 TGCTGTTTAATCCTCTGCG 58 NA Rattus norvegicus 81 RGD1559811 ENSRNOG00000013740 ENSRNOT00000018362 2 1 1 128 16 74962920 74962938 GAACAAGAATTGAAGCCCG 57 74960523 74960541 TTTGCTCACCTTGAAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rae1 ENSRNOG00000021295 ENSRNOT00000038182 2 1 1 81 3 171018612 171018632 CATCGGTTGTCTGTCTTTCAG 59 171018675 171020294 GCAGCGAACATCATTAGCC 60 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 1 2 3 82 3 153451935 153451953 AAAGATCCAGGTTCAACCG 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516,ENSRNOT00000012739 2 2 2 80 3 153592296 153592314 TGCTGGACTTTCTCAAGGG 60 153592357 153592903 CTGAAGCAATCTGAGCAGAC 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516,ENSRNOT00000012739 3 2 2 80 3 153588658 153588676 GGCGGATTCTACATCACCT 59 153588720 153589784 GCCATCAGCATGTTTGGAG 60 NA Rattus norvegicus 81 Brf2 ENSRNOG00000012739 ENSRNOT00000017324 2 1 1 87 16 69092361 69092380 GCAGATAGTGAAGCTTCTGG 59 69092430 69093448 GAACAGTTTGAAGCTGCTG 58 NA Rattus norvegicus 81 Defb50 ENSRNOG00000033972 ENSRNOT00000046156 2 1 1 97 16 75249858 75261953 TTGTCAAAGGTGTTGGCAG 59 75249779 75249798 ATAGAAAGGGCAATTGTCGC 59 NA Rattus norvegicus 81 Mfhas1 ENSRNOG00000011431 ENSRNOT00000015203 3 1 1 166 16 60205479 60205497 CAAATCCACACGCTTTCCC 60 60128246 60135490 CAAGAAAGTACGAAGGTACTTGG 60 NA Rattus norvegicus 81 RGD1307752 ENSRNOG00000020317 ENSRNOT00000027539 2 1 1 80 3 152942411 152942429 GACGAGGAAGAGTATGGTG 57 152942472 152943270 CCAAATGACCATGAACAAGG 57 NA Rattus norvegicus 81 Il1f10 ENSRNOG00000005800 ENSRNOT00000007675 3 1 1 91 3 1415315 1415600 AACTGTGAGCCAGAGAAGG 59 1415655 1415673 CAACTTCCTCCCTGGATCC 60 NA Rattus norvegicus 81 Matn4 ENSRNOG00000014021 ENSRNOT00000018844 3 1 1 81 3 160845221 160845333 GGAGAAGCTGTCAGGTCAG 60 160845158 160845177 AAGGAAAGACCCTCACTCAC 59 NA Rattus norvegicus 81 Defa11 ENSRNOG00000038133 ENSRNOT00000058037 3 1 1 95 16 75517647 75518184 TCAAGATGCAGATGTGAAGTC 59 75517572 75517590 CCATTGTAACCGCATTCCC 59 NA Rattus norvegicus 81 Clp1 ENSRNOG00000007416 ENSRNOT00000009726 1 1 1 80 3 72128100 72128898 GTATTTAGGCACAGCAGCTC 59 72128039 72128059 TAGTTCAAACTTGGTCGTTGG 59 NA InUTR Rattus norvegicus 81 Dusp26 ENSRNOG00000011518 ENSRNOT00000015725 2 1 1 73 16 64801764 64801782 CTTTATCCATCGGGCACTG 58 64799578 64799596 CAGATCTGCTCACTCCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 3 2 2 80 3 176768435 176768454 CAGAGCTAACCTCATCTGGA 59 176762326 176768396 CTGATCACATGTTCATCGTACTG 60 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 3 1 1 60 3 150156782 150156800 CTAAGTCAGAACCTGCAGC 58 150155810 150156761 ATTGGTACTCACTAGAAGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1561928 ENSRNOG00000031879 ENSRNOT00000042609 1 1 1 60 16 61131057 61131076 GTCTGTGTATGCTCACTTCC 58 61131097 61131117 TTCAACCAAAGACCCATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163,ENSRNOT00000089447 3 2 2 80 16 82041428 82045142 TCAAGCAGGGTTATGAAGAC 58 82041367 82041386 CATGTTGAATGAAGTGCACG 58 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 1 1 1 80 16 83358452 83381203 CTATATGGGACACCGCAGG 60 83381247 83381265 TAAGGATAATAGCGGCCGC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562923 ENSRNOG00000038458 ENSRNOT00000058595 1 1 1 60 16 69280074 69280093 GAAAGAGGAGAGGTACTCGG 59 69280033 69280051 GGAACGACTCCATGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736,ENSRNOT00000090674 3 2 2 80 16 81500012 81501352 CTTACGTCTGCAGTGATGG 58 81501394 81501414 ATTCAACTCCACAAGAGTTCC 58 NA Rattus norvegicus 81 RGD1564899 ENSRNOG00000049942 ENSRNOT00000073370 2 1 1 60 16 8883388 8883409 CACCAGTTCTTCAGATCAATCC 59 8883349 8883369 CGTAAACCACATCTTCTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500845 ENSRNOG00000029354 ENSRNOT00000051980 2 1 1 80 16 84406380 84406399 TGCTAGTCATCACTTTGCTG 58 84391482 84406337 GTATCACAGCCTGTACCTG 57 NA Rattus norvegicus 81 Wfdc12 ENSRNOG00000032412 ENSRNOT00000041980 1 1 1 93 3 160581722 160581740 CTGGAGGTGGAGTCAAAGG 60 160581534 160581552 TTGTCATTGTGACACTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Mk1 ENSRNOG00000019657 ENSRNOT00000026601 1 1 1 60 16 20531981 20531999 ACCTTCAATGTCACTGCAC 58 20531939 20531958 GTACCTTCTTTGCCCATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC135696.1 ENSRNOG00000058908 ENSRNOT00000081634 2 1 1 60 16 37500424 37500442 TCCTGGCTTATCCATTGGT 58 37500464 37500484 AGCAGTGTTGTTCCATATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 3 2 5 92 X 22291375 22291393 CTCAGTAGTTCCCTGCGAG 60 22291918 22292523 AACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330 1 1 2 80 8 108791313 108801356 GGACACCTTAGGCATTGGA 59 108791251 108791272 TCAACAAAGCTATCATCAGCAG 59 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 3 2 2 80 15 34356667 34356686 CCATCCATAAGCACTACAGC 59 34356727 34356899 TGGCAGCTAGATACTCAAGAC 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000064712 3 1 2 82 5 138354318 138354338 CTGGATGGAAAGCATGTAGTG 59 138353484 138353575 CCTAAAGGAGCCTGGAACTC 60 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056161 1 1 2 80 8 118148726 118148746 GCTACAGCCATATTCAATCCA 58 118148787 118153784 TCTGAATCTGAACATTGCCA 58 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000077096 2 1 2 82 2 123824701 123824719 ACTGAAGGCCTACTTGCAG 60 123824762 123848106 TCAGCTTGTCACTAAATTGCTC 59 NA Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209 3 1 2 81 11 38359070 38369410 CCATCAAGAAGCATAAAGAAGG 58 38359010 38359028 CTTGGGTCTTTCTGATGGT 57 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 1 2 2 80 20 5533009 5533027 CCAGGATCAGTCTCTGCAG 60 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000088131 3 1 2 80 2 170283072 170283094 GGTCGAATATGATGGACTATGGA 60 170282187 170282211 ATTAGAAGTACACCCTTCAGAGAC 60 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 1 3 3 80 2 184901907 184903595 ACATACAGGACTCTGCTGG 59 184903639 184903657 CAGAAAGCCAAGAGAAGCC 59 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000005061 2 1 2 82 X 35721873 35721891 TCTTCTAGCACTGCAAGCA 59 35721937 35725011 TTTAGTGGTTGGCTCTGGG 60 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770 3 1 2 92 5 136677480 136690057 AAAGGGATGCTGAATGGTG 58 136690112 136690131 TACAAACTCGATCTGGTTGC 58 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 3 2 2 90 8 132780819 132780923 ACCATTGAAACACAGGCTG 59 132780747 132780768 GTTGATTTCCTTGATCAAGCTG 58 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942 2 1 2 105 1 219144481 219173535 CAAGACTTCACGAGCTGGA 60 219173604 219173622 TTCTTGACCACTCCGAGAC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076986 1 1 6 81 17 84358311 84426615 AACACCAGAGACACTACCC 59 84358248 84358266 TCACTTTGCTGCTTCAGAC 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000068553 3 2 6 91 17 84171263 84171281 AACCTATAAGGCCACTCCG 59 84169765 84171208 CTCCTTTGTGTTTGACCGC 60 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 2 2 2 80 X 13277355 13278851 GGATGCTGAAACTGTATGCC 59 13277294 13277315 GAAACACAAATCCAGAAATGCC 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274 1 1 3 80 17 10623260 10623313 ACAAGCTTTGTCATCCTTGTC 59 10623200 10623219 ACTTCTTGAGGTGGTTGAGG 60 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 1 1 2 60 X 58181497 58181515 CAGAACAACATTCAGGCAC 57 58181273 58181291 ATGCATTGGACCACTACAG 58 NA DesignNoJunction Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 1 3 7 80 11 46244233 46248741 CATTACATCTGTGCCTTTAGAGAC 60 46244176 46244197 TGTAGTTCCTCTTCACTAGGTC 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859 2 1 7 80 11 46281533 46283463 CAGTCAACAAAGGCTCCAC 59 46281471 46281489 GGGTACTTCTGGACTACGG 59 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000005332 3 1 2 105 13 94209152 94355044 ATAAGCTGGAACACTCCCAG 60 94209066 94209084 TCTCCCATGATGTCCACAG 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000035888 1 1 2 80 15 45932472 45932492 CCATGTGTCATTAAAGCAGAG 57 45931622 45932430 GATGCTGTCCTGACTATCC 57 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735 3 1 2 87 12 51961620 51975374 CAATGATGAGCACCAAGCC 60 51975424 51975443 CACCTGTTGCCTCTTAAAGG 59 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586 2 1 2 90 17 9741298 9741316 CTGAGAGTCACGACATGCT 60 9741370 9741490 CGGGTCGAGTTGTCTAGTG 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 2 2 2 80 1 89535302 89537996 GCCTCTCACAGAATACATCC 58 89535241 89535259 GTCACTGTACAGACCTTGC 58 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963 3 1 2 84 9 85495453 85499666 GGCTGTAATGGAATTTCACGT 59 85493034 85493053 AGACACTCGGTTCTGATGAG 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 1 2 2 80 1 189905628 189905649 CTGAAGCTCTTGTTCTCAAGTC 59 189905464 189905587 AGCCACAGAAAGATCTGGT 59 NA Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 1 2 2 80 20 6895719 6898881 TTACCCATGGAGAAGACCT 57 6898924 6898943 TTTGGAAATGGAAGTTGGGT 58 NA Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 1 2 2 80 4 145383707 145383726 AGCCCTACCAAGAGATACAG 58 145383563 145383664 TTCTTCTTGCGCTGTTCTG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975 2 1 5 80 17 39188335 39377422 AGTCAACCTCACTTCTCTGG 59 39413147 39413167 AGGAATTGATGCAGCTTTCTC 59 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501 2 1 2 94 14 84703626 84705942 CACCACTGCAGGAATTGTG 60 84703550 84703569 ACTCGACTGGGTTCAAAGAG 60 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076661 3 1 4 81 1 216382701 216382720 CCTCACATCACTTGTGATCC 58 216382763 216394200 AAATGTTGACTGAGCTGTCG 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875 3 1 4 98 1 216565236 216565255 AAGCCATCTTTGTTCATCCC 59 216566191 216629194 TTGTGTCACCTTGTCTTCCA 60 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 3 2 2 80 12 2095651 2095669 CGAGTACCTTCGTCCATCC 60 2095709 2096454 TGGTAACCCACATCATAGATCTG 60 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 1 2 2 110 3 146981133 146983297 CAGATTGCACTTGCAAGCT 60 146983367 146988570 TCTATTATCACTAGGAGCTGTGC 60 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000075193 1 1 2 87 6 60774227 60778774 TTCTGCACCTGAGAAAGCT 59 60778822 60782109 TACAGAGCTCTTCAATGGAGAC 60 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 3 2 2 80 9 47166985 47167006 GATCGTCTGAAGTTTCTACCAG 59 47167044 47168032 CTTAATCGATTCAGGGCTTCTG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000074002 3 1 10 95 2 231335941 231335960 CCACATTCGCCAACTATCAC 59 231335863 231335884 GTGGAAACTTGGCTATCGAC 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061 1 1 2 80 13 96231015 96231035 GAGGACGAGGAAATAATCGTG 59 96226164 96230974 CATTCACATGGACAGAACCC 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531 3 1 2 80 2 187977207 187977225 TAGCCACACTAGTGAAGCC 59 187977268 187978694 AGACTCCTCCTGCTTATTGG 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 2 2 2 80 1 164869916 164873138 TGCCTCTAGATGTCTTTCAC 57 164873179 164873199 TCACATAGACCATCTTGATGC 58 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 3 3 3 80 12 8091946 8091966 TTTGTGAAAGGCTCCATTGAG 59 8092007 8094726 CACGTTTGTGTCATTGTTCC 58 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000091746 2 1 2 82 X 34658826 34661126 GTAGAAAGTCCCACTCTCCAG 60 34661170 34661188 GGGAACATTGTGGATTGGG 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000061746 1 1 2 80 6 11058501 11061307 GCTCACAGTGACGAATACTC 59 11058440 11058459 CTCACTGGATTTAGTAGGGC 58 NA Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 3 2 2 81 2 123271336 123271354 TAGCTGGTGTGAAAGTAGC 57 123271397 123272310 CCACCTTCTTTCCTAACTCTC 58 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637 2 1 2 92 6 27561413 27561431 TGGGTTATAAGCCAAAGGC 58 27560601 27561280 GAGTAGCATATGTTGGTCCA 57 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637 3 1 2 93 6 27561412 27561431 TGGGTTATAAGCCAAAGGCA 60 27560600 27561280 GGAGTAGCATATGTTGGTCCA 60 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 3 2 2 88 1 247871967 247876370 TATATCACTGCTGAAGAGGCC 60 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460 1 1 2 81 12 2555095 2555113 AAGCAGGAGAATCGTGAGG 60 2553388 2555050 TCACAATAATGGGCCTGGG 60 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000078688 1 1 2 83 3 151359871 151359889 GGAGAGTGTCTTCAAGCTG 58 151359483 151359826 GTCAGTGATCTGTCAATGAGG 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 2 4 4 80 6 8250645 8257481 CTTGTTTACATAAGGGAAGTCG 57 8257522 8257540 CTTCATCTGAGACCTTGGG 57 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000087964 2 1 2 86 13 96122332 96141610 TAGCATACATTCGGAGTACTG 57 96141655 96141676 CTGCCATATACTTCAATTCCAG 57 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505 2 1 4 92 15 51903562 51915294 TAGTCGAAGAGGAAGGAGC 58 51903488 51903506 GAACTGTAAAGACCCGTGC 59 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 3 2 2 82 20 248554 248573 GTGAATTGTACTTGGCACCA 59 250938 254200 TATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 2 2 2 80 X 44976228 44979110 TTCCAAGGACATACTAATGAGG 57 44979151 44979169 CATGTCATCAGAGCAGGAG 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252 2 1 2 80 12 6267877 6274290 ACAGTCAAGATCTGGGATCTG 59 6274332 6274350 GAGTTCTCCCTTGATGCCA 59 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 2 2 2 80 20 7772465 7772483 CTTGAAGGGCAAGTGATCC 59 7772523 7772650 GGAGAAAGACTCTTTCTGTATCG 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 3 1 1 128 3 155103569 155103587 GACAAACCCAAGATCACGG 59 155105764 155105784 GAAGATGATGAGGAACAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373 3 2 3 80 5 142702861 142702879 GCTCACTAAGAAGTCCACG 58 142703197 142703516 ACCTCCATGTATCTATCTTGC 57 NA Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699 1 1 2 80 17 42639903 42640148 TGATGGACAGGAAACAGAC 57 42639841 42639860 AATTGACTCCTTCCTTGAGG 57 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000085451 1 1 4 80 10 82050761 82050780 GAGGTACCATCCAGTACCC 59 82050697 82050716 GGTGTGAGTCCATGATTGTG 59 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956 2 1 2 80 7 145088599 145088733 AGACTATGCTGACTCGAGC 59 145088776 145088795 ACTTTGATGTGTCTTCGGAC 58 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000091101 2 1 2 98 1 88955922 88955942 CAAGAGGCTCTGAGCTGAG 60 88961102 88961121 GGTGTTGATTCTGTTCCGTG 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000091236 2 1 3 82 10 38891572 38891598 TGATAAAGTGTAGTTACAGGCC 58 38891641 38891659 GCGAATCTTCAACTCCTCC 58 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000067374 3 1 3 94 17 23116766 23136877 GAAGTATAAGAATCTTATGGCGAGG 59 23136929 23136947 TGACGGTCAAGATGTCTCC 59 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534 2 1 3 81 9 121901261 121901279 GTAGAACGTCTGGCCAGAG 60 121901323 121902471 GCATCTCTGGATCCTTTCCT 59 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 1 2 2 80 9 66507349 66507368 AATGGATGGCTTGATTCCTG 58 66507411 66508975 TATCGAGATAGGCTGTGGG 58 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 3 2 2 80 9 66510826 66511916 TTACAGAAAGTTGGAGACAGGA 59 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 3 1 1 61 10 64175196 64175214 AAGACTAAAGGATCGGGCA 58 64178041 64178059 TGATTCTTCCGACCTCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368 3 1 2 93 10 63747067 63747085 CACGTTTGTTCGAATGCTG 58 63747142 63753429 ATTTGCACTCACGGTTCTG 59 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 2 3 3 80 2 158091956 158091975 GAGCAGACAGAACAGTACCA 60 158083024 158091914 ACATTTCTGAACCACCTCCA 59 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000050547 3 1 2 81 13 90275113 90275132 CTTATGCTCATTCCAGTGGT 58 90275176 90276011 CATCATCTGCTTCCAGGAC 58 NA Rattus norvegicus 81 Pik3cb ENSRNOG00000016384 ENSRNOT00000022179 1 1 1 80 8 107282741 107282760 CTTATGTCCTTGGCATTGGT 58 107279983 107282701 CAAAGTCTATGTGGAAGAGCTG 59 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000085900 3 1 3 60 20 2092091 2092109 GGTCACCGTGAGGTTAGAG 60 2092132 2092151 TTATGACAGGGATGGGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb28 ENSRNOG00000036900 ENSRNOT00000055412 1 1 1 80 3 147992783 147992801 GGGACACATTAAGCTCTGG 58 147992844 147994468 GTTCTGAACCATCCTTCTGG 58 NA Rattus norvegicus 81 Olr758 ENSRNOG00000004938 ENSRNOT00000006545 2 1 1 60 3 102659029 102659049 ATGATTCATGCAGTGTCTCAG 59 102659071 102659089 TATAGGGAGCACAGAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Peli1 ENSRNOG00000006329 ENSRNOT00000009319 3 1 1 80 14 106056680 106059285 ACTGATATGTTTCAGATTGGCC 59 106059325 106059344 ACTCTGACTTCCAGGAACTG 59 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000068531 1 1 2 80 6 28756842 28756862 GTCTACAGCATACTGCATGTG 59 28750090 28756801 TTGGTTCTCAGTGCCTAGTG 60 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999 1 1 2 86 10 38949859 38949877 GAGTTTGCGTCAGTCTCTG 59 38949927 38951877 GAACGCTTTCTTCTACCGG 59 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000085312 1 1 2 130 1 219162341 219181527 GACAAGGCAGAATGGACTC 58 219162229 219162247 GTTGTCTCTGAGGAAGTGG 58 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000047657 1 1 2 100 10 94954950 94954969 TTGTTACTGTCGCTGTTGC 59 94958138 94958156 AGAGTCTTTCCTGTGCACC 60 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231 3 1 2 82 9 55389607 55441056 CAGATTATGCAGATGTGATGC 58 55389545 55389563 GACCAGGAACAACGTAGAG 58 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000027933 2 1 4 80 1 82331121 82338620 CAAGCTGGACGTAATACATCTG 59 82329993 82330015 AAGTTCAGGACAGAGTATGAGAC 60 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 1 2 4 80 1 82332692 82338612 ACGTAATACCTGATCCAACAC 58 82332632 82332650 CAGCCACAGATCCAATCAC 59 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045 2 1 2 80 8 55109065 55110278 ACAGATGAGAGCAGTGACC 59 55109003 55109021 CTGAGGGTCATGACCACTG 60 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700 2 1 2 114 11 53202355 53215939 AAAGCCAGCAAAGGAAGTG 59 53222585 53222603 TATAAGCAGGCTCTGTGGT 58 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073 3 1 4 81 3 8470138 8474434 GAGGATTGTCAGGATTCCGA 59 8474478 8474496 CTTTCTCTGAGTCGGCCTC 60 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 3 2 2 85 9 5323395 5329140 TTTACCATGACAGCCACCT 59 5323328 5323346 CAAGCTAGACCACAACCTG 58 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892 3 1 2 132 1 188693806 188693824 CTTGGAGCAAAGATCCAGC 59 188689950 188693710 CATGGGATTAGTCCCACCA 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 2 2 2 148 4 120412027 120412046 ATTGAGGAGGTGAAGAGCAC 60 120412157 120415006 ATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000015948 1 1 2 80 1 142401817 142401835 CTCGTTCCACTTGAGACCA 59 142401307 142401775 CTGGTGTTGGTATCTTCTGTC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965 3 1 5 111 X 64275183 64275849 GCGTCTAAACAGAAAGTAACCC 60 64272981 64272999 TAGGAAGGTGGAACTGAGC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861,ENSRNOT00000042654 1 2 5 80 X 64273680 64275841 ACAGAAAGGTAGGGTTGGA 58 64273618 64273639 GACCATAATCTCTGAAGAACCT 57 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005545,ENSRNOT00000088861 3 2 4 80 7 64769195 64769215 GAAACCTCACAATTTCCACCA 59 64769256 64775475 GCTAAAGACACATGAGCTGC 60 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000042524 3 1 2 80 1 166342560 166351179 TTGTGACAGTGATACTAGTCGA 59 166351217 166351238 TTTCGAGCCTCCTTATTTAGAC 58 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000084207 3 1 3 80 4 181120392 181124744 ATGATCAGGTATCAAGATCGG 57 181124785 181124804 GTTGTTCCTTTACTTTGGCC 58 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000080694 3 1 4 80 19 41163258 41163277 TCTTACGGTCAAGTTCTGGG 60 41161792 41162228 GTGACTTGTACCAGTTTATCAGAG 59 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 1 2 2 80 10 63651372 63651393 AGATATACTGCTCTTTGCTTCC 58 63651432 63652105 CTGTCCATCACATCCTTAGAG 58 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000048418 3 1 2 111 10 90257528 90257546 GAATGCCAAGAAGTCGGAC 59 90256634 90257454 ATCACGCATAATCTCATCCG 58 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 3 2 2 81 10 83289996 83290014 GTTCCAAGTCCTCCACCTC 60 83290054 83290604 TCACTACCTTGATCTGTGTATAGC 60 NA Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 3 2 2 80 3 82750196 82750215 GTGGTTGTTCTGAATGGCTG 60 82749551 82750155 GATCAAGAGGACTTCTCCTGG 60 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860 3 1 2 81 2 231871187 231871206 AGGCAGTAATGAATGCACAG 59 231870994 231871143 CTCTGCTCATGATCACCAG 58 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 3 2 2 82 7 70618643 70618661 CGCTTCCTGGTAGACAGAG 60 70618835 70619087 AATTTGCCTTCTTGTCCTGG 59 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 1 1 1 60 20 7219421 7219439 ACAAGAACGTTCCCAACCT 60 7219301 7219319 TAGCCTCGAGACTTGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136 2 1 3 80 10 42615755 42616247 AGAAGAACCAGTTTCCTACAG 57 42618557 42618575 TGTCAAGATGTTGACAGCC 58 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136 3 1 3 80 10 42615756 42616249 GAAGAACCAGTTTCCTACAGAG 59 42618557 42618576 TTGTCAAGATGTTGACAGCC 59 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000058663 2 1 2 95 15 51304077 51315382 GGCGAAGGTATATGGTTGGA 60 51315440 51315458 CTTGCAATCAGTGACACCC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000015742 3 1 2 121 4 148258390 148268215 AAGAGAATAGGAGAAAGTACTCACC 60 148268294 148268312 TCAAAGCTAGTGGCCAGTC 60 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 1 2 2 80 5 22393171 22469218 GGGATCAGAGTAGGAACTCC 59 22469259 22469279 GCTCAGGATCTTCGATAAGGA 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157 3 1 2 115 9 14568034 14568053 CAACAACAGATTGCTGTCCA 59 14568131 14568863 ATGGTGATCATGCCTTGCT 60 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266 3 1 2 83 13 89994541 89995431 ACCGTGTATGAAGAGATTGGA 59 89995475 89995494 TTCGAAGTTCTCCAGCTCTC 60 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 3 2 2 80 11 64837655 64837673 TCGTTCAAAGGTACGAAGG 58 64834630 64837611 TAGGGAAGTCAGCTCTGAC 58 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000012988 1 1 2 80 15 37748623 37749421 GCCAGATAGCAAATGTATACGA 59 37749462 37749480 GAACCACGCTGATCAACTG 59 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 2 2 2 86 14 104274952 104274971 CTTACTTTCCAAAGCCCTGC 60 104275015 104277348 GGTTGTTGAACCTTCTATAAGGTC 60 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332 2 1 2 93 12 2239660 2239878 GAAGTCCCAGGCTCTTCAG 60 2239394 2239412 GTTCTGGGAGAGCTGAGAG 59 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 3 2 2 81 13 44629153 44629171 AAATTTGCCGTCGAAAGGA 58 44629215 44629673 ATATCAGCAACGTCTCTTCC 58 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037 3 1 2 89 17 55290236 55292266 GCCTTCCAGAGTTAAAGTTAGAG 59 55290169 55290189 CTCTGAGTTAGGGACTCTGAG 59 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399 3 1 3 80 4 7123709 7123727 GAGATGCTGTCACAGAACC 58 7123770 7126046 TCAGCAAATCCACTTCTGTG 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 3 2 3 80 20 13966652 13966871 CATTTGCAGGTTTAAGGAGAG 57 13966912 13966931 AGCAAGGGTGATATACAGTG 57 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000085125 2 1 2 80 1 214602696 214603735 CTCTTTGTTTGCTTACTAAGCC 58 214603775 214603794 TACACTCAATGTTGACCACC 58 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 3 2 2 80 11 67672246 67672975 CAGAATTTGCTAAGGTTTCTCC 58 67672187 67672206 CATCAGCCAGTACATCAGTG 59 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 1 2 2 80 1 402125 407510 GGAGAAACATTGGTTCCCT 57 407553 407572 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071 2 1 2 119 10 64751728 64755177 CATCAACTTCCAGACTCAGG 58 64756349 64756367 ATAGGAGGGATTCCAGGAG 57 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151 2 1 2 80 5 17642035 17642055 TCAGTTATACTGGGTCTGACG 59 17639002 17641996 AACTTAGCATCAAAGCTTGGTG 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 2 2 2 80 12 11660897 11660918 CATGAATATGAAACTCGCTCTC 58 11655924 11660858 TTCAGAGGTATCTGTGTTTCC 58 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622 1 1 2 80 8 69072607 69072626 CTACAAGTCAGCCACTACCA 59 69072668 69072909 CTTGTTCACCTGTTCAGCTC 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 2 2 3 82 14 22734011 22734031 AGTTGACTTCAGCATACTGTC 58 22734072 22735538 CATTCTCCTTATAGGAAGGGTC 58 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607 2 1 3 80 14 86227674 86227692 TCAATGCAAGGAGGAAGCT 59 86221589 86226846 GTAAACTCTTGGCTGCTGAG 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094 3 1 2 82 9 49901067 49901085 CTCTGTGGATTTCTGGACC 58 49880165 49901022 TCTACTGCGTAATCTGTCAC 57 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 3 2 2 89 7 67341727 67344075 TTTCATCTGGACCGATTCAG 58 67341657 67341675 ATGTATATCCACGGGTTGC 57 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 87 1 24190586 24190756 GCTTTCATGAAACAGAGAAGGA 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452 1 1 4 80 1 24215610 24215630 CATGTAATCATGCCAACATCC 58 24190592 24215569 TCTGTTTCATGAAAGCTGGG 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 3 2 2 81 13 41720268 41722196 ATCATCCCATCATGTATTGCC 58 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 1 2 2 80 2 198291936 198291956 TGAACTGATCAAACTTGCCTC 59 198291998 198292404 GAACTCTCCACTCCTCCAC 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000049357 2 1 3 80 18 56432044 56432160 GAGAAGAGTAGGACCACCA 58 56434121 56434141 CTGACCCATGAGAACAATCTC 59 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000012655 2 1 2 122 4 84424009 84424819 CGATAAATATCTCTTCACTGGTCC 59 84439754 84439773 AGTATTCACACCAGTGTGGG 60 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000088928 3 1 2 83 15 51242341 51242359 TTTGGTGGTAATGCTGCTC 59 51242406 51245740 CTGTTTACCCAGAAGCCTG 58 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000068190 3 1 2 95 14 110757984 110758002 TCCTTGGTTACTGCATGCT 59 110755101 110757925 TTCATCCAGCAGTGGTCTG 60 NA Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 1 2 2 80 13 47908017 47914850 GGCTAAATATTACCACTGAGCC 59 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020204 3 1 7 132 17 57067668 57082576 TTGTTGTTCAAGCTGCCAC 60 57082671 57082690 GCTTCTTCTGCTAGTTGCTG 59 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000005905 2 1 2 80 6 48837332 48842719 GAACTCAGGTAACAATCACCA 58 48842761 48842779 CATTCTGCTGCTCAATGAC 57 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076858 2 1 5 80 X 63806025 63806048 GAGATATCATCCGAGAATACACTG 59 63805593 63805988 ACCAATTTAGCTTCTCCAGGA 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000067422 1 1 4 80 7 143124239 143124986 GAAGGCAAGTGATGTGGAC 59 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076320 1 1 5 80 13 77940874 77942283 CAGAATTTCGAGCAGTTCCT 58 77942325 77942344 TCACATCACGCAACATTCTC 59 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000089615 1 1 2 172 10 65495504 65496562 ATGATGAGGAGGAAGAGGAG 58 65495260 65495369 GTCATCAAAGGATGTGCGT 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 3 2 3 93 11 71128128 71128147 ATCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000038798 3 1 2 91 1 102115704 102115723 CTCCTAGAGTACACCGACTC 59 102114502 102115650 AGGTAGTTGGAGACCATGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000078816 3 2 3 81 8 49014492 49014513 AGAGGAGATATCATTCGCTCAC 60 49010343 49014451 ATCTTGGAGCGGTAAACCTC 60 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174 2 1 2 98 X 84821723 84821743 GATGTGATCGTAATAGGGACG 58 84768455 84796562 GTAGCTTCTTGAATCAACATGC 58 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 2 4 6 81 15 36972825 36976236 ACATGGGAGATGCATTTAGC 58 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000049391 1 1 2 80 17 63849459 63860379 GGAGATGAGATTGACTGGGA 59 63849398 63849418 ACATATCAACACCTCTCCAGG 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057986,ENSRNOT00000089234 2 2 5 81 1 79699348 79703988 CTTCAGGTGAACAAGCCTG 59 79699285 79699303 TGAAGACCACTGAGCTCTG 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057986 3 1 5 80 1 79685408 79685428 CTACACCCTACGAACTCTGAG 59 79681616 79685367 TGTGTTACAGGCTTGTTCAC 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 1 4 5 82 2 30666646 30667396 CTCGGGAAGTCTGATCACC 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076434 1 1 5 173 2 30664879 30666572 TGGTAATGGTACACCAGGG 59 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 1 2 2 80 7 139716088 139716201 GGCTTTGAGGCTTACACAG 59 139716245 139716263 GACCACAAATGGGATGCAG 59 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376 1 1 2 151 7 139686345 139702071 CTATTCTTGAAACCGAGTGGA 58 139707078 139707096 GAAGATGCCAACTCGTACC 58 NA Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 2 2 2 80 6 10961896 10961916 AATGCTTCAGCCATTTACGAC 60 10961957 10962525 TTCTAGGCACTCAGAAAGCA 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 1 2 6 85 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527373 CAGAAACATAGATGCCATCCA 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 2 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527354 44527374 TCAGAAACATAGATGCCATCC 58 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941 1 1 2 154 19 49996743 49996761 CCTCACTATGCTCCAGGTG 60 49997945 50000318 TAGGAAGCTTGGCCTTCAG 59 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000081370 1 1 2 80 3 148654671 148654832 TGTAGCATTCTGATTTGGTGG 59 148654874 148654892 TCCAGGGACATAGAAGGTG 58 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 1 2 2 80 15 8741206 8741226 CTGCTATGTAAAGTCTGTGGG 59 8741268 8744468 GAAGAAGCCCTTACAGCCT 59 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 1 2 2 80 19 44143513 44143532 CATGTGAATGGTGACCTGAG 59 44141135 44143472 CACCGATACGTTGTATCTGAC 59 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000048141 1 1 2 80 3 112657706 112657724 GTAATGGCTGCTTGTTCGG 60 112657767 112657906 CTCCTCACCCTGATAGTTCC 59 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013297 3 1 2 80 15 89297212 89297231 TCCTGTACCTTCAGGTACTG 58 89288652 89297171 GTAGATGTAGACAACACCTGG 58 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 2 3 3 80 8 71046691 71048848 GAAAGCAAGGATGGTTTGAC 58 71046630 71046648 GTCTTCCATGATGAAGGCT 57 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 3 2 4 81 5 78371664 78372596 TTCCCAAGGATGAACAGGG 59 78371601 78371619 AAGGTCTTCCTCAGCAGAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000086635 2 1 2 81 5 102641810 102680621 AATGTCCCAACAGGTTCCA 59 102641747 102641766 CTGGTCTATCTCCTCCAGGT 60 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000077612 1 1 2 80 11 65076138 65076156 CTTATCCCTCCTCACGCTC 59 65073757 65076095 TCTCATGTGGCTTACTGAGG 59 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000078776 2 1 2 83 8 47694093 47695441 CAATCCTGGCTATCCCTCC 59 47695488 47695506 AGTAGAGTCTGCTTGCCAG 59 NA Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 3 2 2 80 13 98055841 98055862 CAGCTTATCTGTCAGTATGCAC 59 98054863 98055804 CAGAGTATCATCTAAGCCTTCAG 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331 2 1 2 88 7 24195216 24200503 AGCATTCCTAGTGAGACGG 59 24188817 24188835 CAGTGAGAAGATGCTGGTG 58 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000078754 1 1 2 82 1 214323081 214324996 TCAGCTATACCTAGGCACAC 59 214325041 214325059 CACTGACTGCTGTGAATGC 60 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 2 2 2 80 18 58338772 58338795 TCAGGTCTTAGTTCATCTACACAG 60 58338834 58339465 AACCCTGGTATGCTGTAGC 60 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 3 2 2 64 1 173730159 173730177 GCCAACTCTGCAATCAGAG 59 173728548 173728569 CAAGATCATGTTGTTCTTCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663 2 1 2 80 20 28722661 28757515 ACCGAAAGAAGACTGATGGA 59 28722600 28722622 GAGAAGAAATACACAGTCTCACG 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 3 3 4 81 7 140417356 140417374 AGGAAAGACCACCATCCTC 59 140416247 140417312 TGTCTCCACATTAAACCCGA 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402,ENSRNOT00000083774 1 3 4 80 3 2970215 2970747 CCAGGATGATTTCTCTGGG 57 3000481 3000502 TTCATGAATCTCTTCCCATCTG 58 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 3 2 2 96 3 112370317 112370962 ACAAACTGACTGTTCTACCTG 58 112370241 112370259 AAGGAAGACGGTAGCTCTC 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000048430 2 1 4 80 12 19964595 19964618 TAGCTATAAGTACTGGCAGTTACC 60 19939583 19964558 CTTGACTAAGCATCTTGTGCA 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 2 4 4 80 12 19938370 19938388 CCTGGTCAACAATTGTCGA 58 19760570 19938328 GCATACAGAGACAGGAATCTG 58 NA Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000057843 1 1 2 94 15 83708183 83708201 GAGACGATCTGAAACACGC 59 83708259 83710369 ACATCTTGTCTGGACCAGC 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 3 3 4 80 4 85594280 85594298 TGTGTTCCTGAAGGATGCT 59 85594340 85595685 GAGACCTTGCACAGAATAGTG 59 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 3 2 2 81 3 177040812 177041755 AAAGTCCTATCGGAAGCTGG 60 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000012845,ENSRNOT00000068748 3 2 2 81 7 143110040 143110058 CAAGGCTCAGTACGATGAC 58 143109743 143109998 CTTTATCTCCTCACACTTGGTG 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394 3 1 2 106 8 97568126 97568446 AACTGGTCTCAGTGCTCTG 59 97568516 97568534 GTTATTGGTCGCTCAGCTC 59 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855 2 1 2 109 3 123622765 123625235 GACTTCCATGCAAATGATCC 57 123622675 123622693 TCTACTTGGCACAAGAGGA 58 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000042180 1 1 2 80 7 143416219 143416237 CCAATACGAGATCATCGCC 58 143415889 143416176 ACCTGGAGTTCTTCATTTGC 59 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000042180 3 1 2 81 7 143416220 143416238 GCCAATACGAGATCATCGC 59 143415889 143416176 ACCTGGAGTTCTTCATTTGC 59 NA Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 1 2 2 80 1 47660763 47660781 GTACCTCCAAGACTCCCAC 59 47660825 47661754 GTTCCTCCAAGATCCACGA 59 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000085074 1 1 2 80 10 65668491 65668509 GAAGAGGAACGAAAGCAGG 59 65668428 65668448 TCTTCTCTGCAAACTCATGG 58 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 1 2 2 80 6 107642172 107642836 TACCTATCACTACACAGGCTC 59 107642112 107642132 TTCTTATAGATGGCAATGCCC 58 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 3 2 2 80 X 116758229 116758247 CGCATCCAGAAAGAAGAGG 58 116757424 116758187 ATGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000090765 3 1 4 86 1 262905659 262913313 TGTCTCCTTGGAAGACAGC 59 262913363 262913381 TGTTCCTGGAGTTGTTCCA 59 NA Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 1 1 1 77 1 229938563 229938581 GATGCTTGACAAGTTGCTG 58 229938625 229938643 ATCAGTCGAGACTCCTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851 2 2 3 80 13 77031511 77031855 GTCAAAGGTCTATCAGGAGCA 60 77031897 77031915 CCTGAAGCCAGAAGTTTGG 59 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 1 2 2 123 17 78493164 78493182 GTGATGGAGAAGAGGAGGC 60 78492251 78493077 CAAGTTCAAGCTGCTCCAG 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000070981 2 1 2 80 10 13411009 13415184 TGAGATCTGTTCTTCCAGCC 60 13415226 13415245 ACTCACCTTCTAAGGCATCC 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 3 3 3 91 7 99155552 99171406 GGAATATGGTGTGATCTTTGCC 60 99171456 99171476 TCTTTCCCATCCCAAAGTCTC 60 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000003689 2 2 5 80 13 78758181 78758201 ATGAGGAAGCCAAGAAATGTG 59 78758242 78759593 TATTCAAGCCCACTCCTCTC 59 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 1 2 2 80 7 143402868 143404913 TGTACCAGACCAAGTTCCA 58 143402806 143402824 AGATCTCGTTCCTGGTGTG 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995 2 1 2 80 10 13557348 13557367 GATTCAGCTCTTGCAAATGG 58 13556031 13557306 TGTACAAACTGCCTCTTCTG 58 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390 2 1 2 80 1 214477325 214485880 TGGAGCCAGGTACATACAG 59 214477263 214477281 TCAAAGAAGTGTTCCGCAG 58 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190 3 1 2 83 20 13604729 13606544 CCAGCCAGGTATGTTTGGA 60 13604664 13604685 CACTTTAGCTCTGAATCGAGAC 59 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407 3 1 3 80 13 77640850 77640874 GATTACTACGAGTATCCTATCGAC 58 77641834 77641852 TGTGAACTCTGTCACAGTG 57 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000056047 1 1 2 80 20 27285648 27287032 GAGAAGTGCCTTACCATGAG 58 27285587 27285605 TAAGCCACGGTACAATCCT 58 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000080338 1 1 4 80 1 189393396 189393416 AGCTTATCAAAGAGCTACAGG 58 189393455 189394994 CTGAAACAAACTCCACTTTCTG 58 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000003946 2 1 2 80 X 70447510 70447734 GATTGCAGTTATCCAGATCACAG 60 70447773 70447792 GTGAACTCCCGAATGAACAC 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000048592 3 1 4 86 1 265552642 265560295 TGTCTCCTTGGAAGACAGC 59 265552574 265552592 TGTTCCTGGAGTTGTTCCA 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 2 3 3 111 X 104896792 104897676 AGAACCTAGAGCTTACCTGG 58 104897750 104897768 TCCTCCTCTCATGTCATGC 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000074330 2 1 3 94 X 104882883 104883819 CTGCGTTCTGTATTCGTGG 59 104883876 104883895 CTGAAACTAACAACAGGCCC 59 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000083269 2 1 2 96 15 104027056 104101870 AGTAGAAGGTTACATCCAGGC 59 104101926 104101946 ACACTTCATTCCAAAGAGTGC 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489 3 1 2 83 1 81242991 81244682 GGACATCTCCAAGATGCAC 58 81244729 81244747 TCGATTCTCTTCTCCAGGG 58 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093 2 1 2 80 10 46646511 46646529 ATCCGAGCTCTGAAGAAGC 60 46642110 46646467 ACAAGTCTCCAGCACTGTC 60 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429 3 1 2 81 3 150380437 150380456 GCAGCAACTGCCATATACAG 60 150380658 150382550 GATAATCAAACAGCCTGGCA 59 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 3 2 2 89 10 74099700 74099724 CATATTTGGATCCACCTAATGAGAG 59 74097083 74099653 TCACATGACCACTCCTGTC 59 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 2 2 2 60 14 107393319 107393337 CACCTTTGACAAACACGGA 59 107393358 107393379 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004 2 1 5 99 X 71299989 71300009 TTTATGAGGAACTTGGTCGTC 58 71299893 71299928 CATTGGTTCCAGGACAGAC 58 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000088169 1 1 2 80 5 74107867 74107887 CCTCAGTTTCATCCTAACGTC 59 74106254 74107825 GCAGGTGGAATGGTTACTG 59 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366 3 1 2 80 5 74067057 74074625 GTGTGAATGCCCAGATTGG 59 74066995 74067017 TGACATTAGTATCCTGGAGACTC 59 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000089683,ENSRNOT00000080038 2 2 3 80 6 108859284 108859304 GTAATGGTTCTCAGTCAGAGG 58 108859345 108862395 CTCTTTCTGTTCTCGAAGCA 58 NA Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 2 2 2 80 13 90820852 90822274 CTTACAGCTGGACAAGTTCC 59 90820791 90820809 AAGGCATCCTCATTTCCCA 59 NA Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 3 1 1 97 1 7305885 7305903 ACAGCAACAACAGCAACAG 60 7313098 7313117 TCCTCTTCCTCTTCCTCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 3 2 2 80 8 71918617 71918637 GAAATCGTGAACTATGAGCCA 59 71919308 71923104 TCCACTTAGAAGGATGTAGGT 58 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 2 2 2 124 14 86479834 86479955 TAAGCCTGTCTGGTATGCT 58 86480043 86480061 ATTTCTTGAAGGCGTCCAG 58 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 2 2 3 92 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038991 100040213 TTTGTAAGGTCATGTCTCGAG 58 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 2 2 2 80 3 71293345 71293363 GCTTGGAAACCCACATGAG 59 71291325 71293303 AATAACACCCAGCATATGTGC 59 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 2 2 2 80 12 13718149 13718167 CAGGTCATCACTATCGGCA 59 13718211 13718319 ACAGGATTCCATACCCAGG 59 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 1 2 2 95 20 7880383 7880403 CACATCTACAATGCCTACCTG 59 7880460 7880582 GATGAAGGGTGCGTTATGG 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 1 2 2 80 18 63366954 63370439 GGAACACAGAAAGGACCTC 58 63366892 63366910 TATGAAGCCAAAGCTGGTG 58 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000070907 3 2 3 80 4 183350533 183350556 AGACTGAGTCTATCAAAGAGTCAG 60 183347498 183348569 GTCTGTTAAGAAACTCCTGCG 59 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000084906 2 1 2 85 12 2145514 2145532 CAGAACAAGAAGCAACCCA 58 2145581 2148311 CTTGCGGTATCGAATCGAG 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000084004 1 1 3 80 10 12048912 12048932 TCATTCGTACGAGAAGCCA 59 12048974 12048994 CATGGAATGTTCTGGAATCCC 59 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 3 2 2 80 18 64053900 64057248 CCTACGCCATGTTTAAGATCG 59 64053840 64053860 GCAGATACTTCACAGTGAAGG 59 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467 2 1 2 81 9 82437535 82437556 CCCGGATAATAAAGAGTTTGCT 59 82437598 82439341 AGGACCACTTCTGTCAGAC 59 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484 1 1 2 82 11 81373815 81375120 ATTCACAGAATTGGCAGAGG 58 81373752 81373773 AGAATCCTCTTGTCTTCTTCAG 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 3 7 9 80 4 14185824 14185843 CTCAGAACCTATCGAAGGCT 59 14185884 14236270 GTGAATCCAGTTATGGGTTCC 59 NA Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 1 2 2 80 X 68777423 68778025 GACCATGCAGGAAACTTCG 59 68778067 68778087 TGTTGATCTCCAGTGACTCTG 60 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 1 2 2 82 5 155666655 155666673 ATCTGGAGAAGTGTGGCTG 59 155666806 155666824 GATGTTGTCCGAGCATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418 3 2 3 81 1 192234077 192316382 CATTTGGTTAGGTTTGCAGG 58 192379903 192379921 GAACGTGACGAATTCATGG 57 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207 2 1 2 90 9 70432374 70432392 ATAAACAGGCTCACAGGTG 58 70404283 70432039 CATCAGAGTCTTCTTCAATTGG 57 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000082058 2 1 2 80 7 116960399 116961964 GGATTTCTGGATCCACAACG 59 116960338 116960357 TTCTGCACGTCAATCATCCT 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000019969 2 1 6 100 4 154706135 154708451 TACTATCAGCACCTGCTGTG 60 154708513 154708532 TGGCTCTTTAGGTAGTGGAC 59 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 1 2 2 64 15 19727785 19727803 CAGAGACTGGTGTCGTCAG 60 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209 3 1 2 109 19 38601556 38601574 CTTCACCCAGGAAGAATGG 58 38601647 38601982 TGGAGACTTGATACCCGAG 58 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 3 2 2 87 8 116327688 116327706 CTCTACCATCGGTGAGAGC 59 116327755 116328262 GCAGTTCTCCATACTTGAAGC 59 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000055034 2 1 2 96 1 196878869 196882160 CCATGTGGATCTCCTTCCA 59 196878791 196878809 CATGAGTCATCAGCAGCTG 59 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 2 2 2 80 14 16378598 16378619 AGACAGATGTTTGTCATGAGAG 58 16377750 16378559 GTCAAACTTCTCATGAAGCTC 57 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 3 2 2 80 X 105149487 105149505 GGAAGATTCTAACCACGCT 57 105149549 105151032 TTCTTAGGGCCTTTCTGGA 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999 2 1 4 86 13 78520212 78521856 AGCTTCCTTACAGAAGATAGCT 59 78520147 78520165 TGCCCTTTCTCGGAATCTC 60 NA Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000085175 2 1 2 175 14 92045815 92057227 TTTCCCTCCAGGCTTTCAG 60 92042441 92045678 CTTTGACATCCTTTCTGAGCC 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000080753 2 1 2 113 14 91845578 91850871 AGTCATACTGGTGAACGGC 60 91850948 91850966 GCATTTGAAGGGCTTCTCG 60 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 2 3 3 80 11 67251994 67252013 CCAAGAAGGGAGAAAGACTC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 2 1 1 61 13 36265311 36265330 GGAAGGAGTTCAGCTTTGTG 59 36258661 36258679 CATTGTGCTCAGCATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 2 1 1 65 1 255573152 255573170 GTGCTGAGACTTCATGGTG 59 255573027 255573048 CTTATGCTTGTTCTTCTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907 3 1 2 113 X 85465766 85465784 AGCTACATCTGGTGACAGC 60 85467506 85483679 TAGTTACCTCCTTGCATAGCA 59 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000084970 3 1 2 105 19 37668759 37669155 TGAAGAGCAAATTTGACGCC 60 37669223 37669241 GGGATCTGGTGTACCACAC 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000040188 1 1 3 80 3 146381226 146381246 CGGCAAGTATTCCTTTCAGAC 59 146380166 146381187 ATATTCCAAGAAACAAGGCCTG 59 NA Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 2 2 2 80 Y 152646 153827 GGGCTAAAGCTATGATGAACC 59 153866 153887 TCAACATGTAGCTCAGTAAGTC 58 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599 2 1 4 94 6 109673394 109673412 TGACTCTGAGTGCTATGGT 58 109673476 109673500 CATGAACTTACCTGTGGAGC 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181 2 1 2 80 20 20274024 20274042 AAAGATGACACCAAAGCGG 59 20274083 20274787 TCTATTCACCACCATCTTTGAC 58 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 3 2 2 85 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019871 77019892 ATAGCTGAGTTTCTGTTGACTC 58 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000034041 2 1 2 81 2 27258068 27266478 CCAAACAAACTCAACATCAGTG 59 27258008 27258029 TCTCACTGAGAAGAAAGTTGAC 58 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000078701 3 1 6 109 19 33932881 33932899 CAAGTGTATGAGGAACGGC 59 33932969 33979338 CACTGCTCTGTACCTTAAACAC 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 3 4 6 116 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965718 33965737 AGATTCAGGACAGTGATGCC 60 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292 1 1 2 112 7 141388618 141388636 CTACCCAGGAGGGATTAGC 59 141387763 141388543 CCTTAGACACATGCAGAGGA 59 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292 2 1 2 113 7 141388618 141388636 CTACCCAGGAGGGATTAGC 59 141387762 141388542 TCCTTAGACACATGCAGAGG 59 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000091772 3 1 3 86 10 13321050 13321156 GGGCTTCAAATGGGAAAGAG 59 13320983 13321002 CCATCATCACCATCATCACC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 3 2 2 80 6 53728201 53732264 CACTCCTAGGTGATGATTCTC 57 53690046 53690064 TCCAAATGGTGTCACTGTC 58 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 2 3 3 81 8 72486352 72592912 ACTGTTGGCCTATGTTTCTG 58 72486290 72486308 CAAGGCATTAGACAGGGTG 58 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256 3 1 2 86 9 82724733 82724933 GGATCTTCAGCAGACTTCAG 58 82724982 82725000 GAGGTTTCAGTGGTACTCC 57 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000066455 1 1 2 103 1 219861471 219862092 CTTCTTGTCTGCAGGACAC 59 219861386 219861404 ACTTCTGTGGATGCTCCAG 59 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000066455 2 1 2 155 1 219861471 219862092 CTTCTTGTCTGCAGGACAC 59 219861334 219861352 AGCAGAAGCAGGAAGAGTC 59 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000011085 1 1 2 83 5 50068704 50072278 TCTCTGTGCCAATAGAGGAC 59 50068640 50068661 GCAAGCGATATGTTTCAAATCG 59 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 2 2 2 82 1 222869618 222869636 GTACAGGCTGACCAGTGAG 60 222869681 222876955 CATCTCTGACCTGGTCACTC 60 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 3 3 8 80 4 8194329 8194476 CAATCAAGAGGGATATGACCG 58 8194269 8194287 AGGCCTAGCTCATTTAGGT 58 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 2 2 2 164 12 11779910 11779929 TCTTGGCAATCAGGTATCCA 59 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA InUTR Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253 3 1 2 80 3 114010852 114010870 CTCCTCTCAAATGCCACAC 59 114006222 114010809 CAAACTCGAAGTGCTATGGA 58 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000051342 1 1 2 80 17 69391735 69395068 AGAGAACATGAAGCTGAGTCC 60 69391675 69391694 ATTCCACCAGCTATGTACCG 60 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000084628 3 1 2 80 1 53186398 53186416 GCTCTGGGTATTGAACCCA 59 53186698 53186844 TATTCCCATATAGGGAGGATTAACC 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334 1 1 2 107 18 55810037 55810057 AATATTACCAGCAGCTTGCTC 59 55810126 55811808 CAAGGCTGTACTTGTCCGA 60 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 1 2 2 138 6 111180315 111180596 GCCTGTTCTCTATTCCTATTTCC 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 3 2 2 80 13 102842703 102842723 TTGATTACTTAGTTGCCCACG 59 102836769 102842664 ACTGTACAGCAGATACAATCTG 58 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000003198 2 1 2 98 13 102858940 102913731 CACGGAGAACCATACATCTG 58 102858861 102858879 ATGGAGTTTCTACACCGGG 59 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000089456 3 1 2 81 1 256664565 256664584 AAATGATGTAGTTGGGACGA 57 256662124 256664522 CGAGGATGAGAAATCTTCCA 57 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000001437 2 1 2 89 12 13133210 13135877 CAACAACTTCTGCAGAGGC 60 13133139 13133157 GTCGTCTTCAGGATGGAGG 60 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000089750 1 1 2 82 18 44879525 44879543 AAATGGGAATGTTGCAGCC 59 44888802 44891045 GGTCAATGGCATTAGCAGG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 1 6 7 80 1 102915771 102920319 TTTACTGAAGGGTCTGGCT 58 102920363 102920381 AGAAGATCCAGTGCCTCTC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185 3 1 3 149 X 120916784 120917495 GAATTAAGCAATGATGCCACAC 59 120928702 120928720 CTCAGCAAGATGCTTTGCT 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762,ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 3 10 10 80 7 117246916 117247150 AGCCTACTTCCAGTTCTTCTC 59 117246856 117246875 TACTTCCTGCGTAACGTCTC 60 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400 3 1 2 80 15 19811433 19813978 ACAAACAGATAACAGCACGG 59 19811372 19811391 TGAATCTCATCTTGGCTTCG 58 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 1 2 2 91 1 80307606 80307949 GATCCGTGAGAAGGTCCTG 60 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 1 2 2 80 20 29411309 29411330 CCTGAAGAACATTAATGACGTG 58 29411370 29429207 TGCATGGTCACTTTATCGAG 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 3 2 4 80 7 142035043 142036927 AGTTCTCCAACGGAATAGGC 60 142034982 142035003 CGACAAAGTACATGTTGATGGA 59 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378 1 1 2 80 15 28495996 28496014 GGTGTGAAACGATCTGCAG 59 28495451 28495955 AAATGAGGAACTGAGTAGAGGG 59 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408 3 1 2 113 19 42800136 42800154 TGAAGATGCAGAAGGACCC 59 42781545 42800059 TGACTGGATGATGCTGTCC 60 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944 1 1 2 99 8 53736724 53736742 ATCTACATCGTCCTCCGGA 60 53736805 53737777 TACAGTTGCCCTTGAGTGG 60 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292 2 1 3 81 2 154559800 154559821 TGTACAGTCTGAAATCTTTCCC 58 154559860 154561758 TCCAGATATGATAATAGCCCGA 58 NA Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 1 2 2 80 1 101217211 101218539 AGCTGAAGGACCAAGTCTC 59 101218583 101218601 AAGGTGCAGAGATGAGCTG 60 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 3 2 2 80 2 102707721 102707742 GAGACTTTGTAGCTGTCTTTCC 59 102703168 102707685 GATCAAACCTAAAGTCCTTTGGAG 60 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000018293 1 1 2 80 9 74018366 74019180 CTCTTTGAAGGGATGGCTG 58 74018304 74018323 TTCAAATGCAGGGAACTTGG 59 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000078050 2 1 3 81 6 122751490 122754142 TGAGAAAGGAACTCAACAGAG 58 122754185 122754203 TTGACTCAGCTCCATTGTG 58 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000044778 1 1 3 80 1 3872226 3890881 ATCTCCGACTTCCGATGTG 59 3872164 3872182 CGGGACTCTTTGTCAATGC 59 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183 1 2 3 80 5 78554916 78554936 AAAGAACTGGGTCGTAATGGA 60 78554977 78561394 GTCAGTCCCACTCATCTTCC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 2 5 5 81 19 43234682 43234701 AAAGTGATTGAGCAGATGGG 58 43234742 43267700 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537 2 1 2 86 16 21347236 21347257 AAGACAGTTGTCATCATTCTGG 59 21345288 21345306 TTTACAGTCCAGACCGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000089897 1 1 3 80 4 38338324 38338345 AAGGCTGAAGACTTAAGAACTG 58 38338385 38378652 AGACAATCTCATCCTGACGA 58 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 2 2 2 80 8 14115819 14117151 GCAAAGCAACAGATCTCAG 57 14115757 14115776 TAAGTCTCCCATCATTCCCT 58 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 2 2 3 121 20 40667641 40701727 CCACAGATTTACTCTGTGATGAG 59 40701808 40701826 CTCTGGATGTCGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 3 3 7 80 9 43621063 43623578 GGCTATACAATCTGACAGCA 58 43623621 43623639 GCTTATAACTCTCCACGGC 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054 2 2 7 82 9 43740209 43743120 CTAAACAGATGTTCCCTGTGG 59 43743164 43743182 ATTGAGGTTGACTCCACGA 59 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074378 2 1 3 96 5 159091423 159091441 TTAGAAGCCACCGTCTCAG 59 159084216 159085681 ATGAGCTGGGTCATCTTCG 60 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000035722 1 1 4 80 4 85694883 85701100 GTCCAGCATCTACTTCAGC 58 85701143 85701162 TCTGACATCTTGCAAGAGTG 58 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 3 2 6 119 20 3300786 3301071 ACAGTTAAGGACCACCCAG 59 3305192 3305210 GTGGTGGAATCATTGGTCC 59 NA InUTR Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 2 1 1 95 1 257080061 257080079 CATGCTGTAGAGATCAGCG 58 257081922 257081941 TTTGGGACCTATGAACCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593 1 1 2 80 6 44240080 44240751 CTGGTTTGTATAGTGTCTACCCA 60 44240788 44240809 CATTCTGCAGTAGAAGATGCAC 60 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000040540 3 1 3 88 15 28311303 28312000 CTGCCAAGACTCATTCTGTG 59 28311234 28311253 GAATATCGCTGGACGTTTGG 60 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000066975 3 1 2 80 7 49076467 49076486 TGTATCGGACTAGGCAACTC 59 49075501 49076427 CAGGTAGCTTCCATTGTATCCT 60 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185 1 1 2 82 5 163024026 163026157 ATGCTTTGGACAAAGCCTC 59 163023962 163023982 CATAGATCTGGTGCTCTAGGT 59 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549 2 1 2 80 4 147824661 147825648 CCTCAAGCAACAATTCCCA 58 147825692 147825710 ACTTGGCTGTAAATGGGTC 58 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 2 2 3 80 7 70980739 71069218 GAGTTGGGAACAGAGGACTC 60 71069260 71069279 TGTTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 1 4 10 80 9 95203512 95298732 CACTTTCCAAGGAATTTGAAGC 59 95298772 95298791 AGACCATGGATCCCAAAGAG 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 1 4 10 80 9 95162001 95298732 CACTTTCCAAGGAATTTGAAGC 59 95298772 95298791 AGACCATGGATCCCAAAGAG 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 3 4 10 83 9 95222320 95298733 CTTTCCAAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 3 1 2 109 2 166669302 166669321 ACATCAGATCATTCCGAGGA 58 166655586 166655604 CTTCACACGCTTGAAATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 3 2 2 82 1 220075542 220075657 ATTCTGGGAAGAGGTTGGC 60 220075478 220075496 ATCACAGGAGCAGATCTGC 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 2 2 3 81 10 46085365 46085383 CCCTCTGCATCCTAACACC 60 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000022060 2 1 2 97 1 151730101 151730119 GAGACGGCAAATCATCGTC 59 151730177 151767503 GTCTTTGTACCTTAGGGTTTCC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000082793 2 1 8 80 6 64790204 64794464 TCCTCTTGATCTGGTACAGC 59 64794507 64794525 ACAATATTCTCCCGTGGGT 58 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 3 2 2 102 18 35780451 35780469 GACACTCCGCTATGAGGAG 59 35762732 35780385 ATCTTCCTCCCTGATGGTG 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000079069,ENSRNOT00000083012 2 2 5 80 1 15835980 15840754 CCGTAGATCAGGATTTGCT 57 15840797 15840816 GCATTCTTCCAATAACACGG 58 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000047666 2 1 4 84 8 53855024 53858140 CAAGTACAGAGCGAAGCTC 58 53854958 53854976 TAGGGACTTGAGCATGACG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292 2 1 2 80 11 69978081 69979293 CTACTCAAGGACTTCCTGC 57 69980110 69980128 GCACATTAACTCCACTGCT 58 NA Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 2 1 1 80 10 109278973 109278991 GCCTGAGTAAGGACCTGTG 60 109280646 109280664 CCATCATGGTCTTCTTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 1 2 4 120 7 123637577 123637595 CAATGGACTGAAGGCAGTG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 3 2 2 80 18 68995290 68997658 CATTATCAGTACTAGGAGTGTGGA 59 68997697 68997715 CCGGAGGGATGGTTATAGC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 1 3 4 82 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 2 1 4 83 9 81577344 81577362 GCTGACACATCTCCATCCT 59 81576564 81577299 TAGTCATGGCCTTGATAGACC 59 NA InUTR Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790 3 1 2 85 1 57370765 57370783 CCTCAAGAGAAGAGCTGCA 59 57370830 57382149 GTAATCCAGCTGGACAAACAG 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000084017 1 1 2 80 1 57373856 57373875 TCTGCATGCATTTATCGCTC 59 57373916 57382151 ATGTAATCCAGCTGTAAGTGC 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000084017 3 1 2 80 1 57373855 57373874 ATCTGCATGCATTTATCGCT 59 57373916 57382150 TGTAATCCAGCTGTAAGTGC 58 NA Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 3 2 2 62 1 79899813 79899832 ACAACGGTATGTGTTGTCAG 59 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 3 2 3 70 13 82562069 82562087 GTCATCTACAATGGCGGTG 59 82563169 82563187 TAACCAACCGCAAACACAG 59 NA DesignNoJunction Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048137 2 1 5 111 3 2263970 2263992 GTATAGTGTTGATGGAGTGTCTG 59 2264996 2266027 GAATACCGAGATGGCTTGC 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 2 3 6 96 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429981 3430147 TGATCTCTTCTGCCACCTG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 1 3 6 95 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 2 2 4 80 1 102824431 102824452 AGAAAGAAATCCATCAACCTCC 59 102824085 102824392 GTAACTTGGTCACTGCTTCTG 59 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000079926 1 1 2 80 10 61718496 61719934 CATAGGCATGAGCACATCAC 59 61718435 61718454 CTCTTCCTCATCATCGTCCA 59 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000048175 2 1 3 80 14 28659355 28659374 TACGTGTGGAACAACTACCA 59 28536240 28659315 TGTGGTAGAAATCCCTGATCTG 60 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 3 2 3 81 7 28741997 28742017 GTTTGCAACCACTGGATATCC 60 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 1 2 2 80 13 99273804 99273826 ACATCTTAGAGAAGTTCTCCACC 60 99272354 99273764 GGGAGAACTTCCTCTCCAG 59 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000072262 3 1 2 80 6 95060929 95060952 CTCTTTGCTCCTTACGATGG 59 95060868 95060887 AAGTAGTGGATCTGACAGGG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000022331 2 1 4 89 1 200658081 200692394 TAGAACCAGAAGGAGCACC 59 200658010 200658028 GGAACTTCACAGTGTTGGC 59 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 1 2 2 80 1 221743902 221743923 GAAGATGAACCTCTTCATGCTC 59 221743960 221744085 GATGTTTCTGATCTGTTCCACTG 60 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 1 2 2 80 12 15980291 15980309 TGGACCTCTGTCCTATCTG 58 15977435 15980247 TGTGCAGTCTCTTGTACCT 58 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 3 2 2 80 12 15980290 15980308 GGACCTCTGTCCTATCTGC 59 15977434 15980247 GTGTGCAGTCTCTTGTACCT 60 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000047831 3 1 2 81 1 171921074 171932133 AAAGCAGAGGAGTTACTGCA 59 171932176 171932195 ACTCATACTGGTTCCGTTCG 60 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837,ENSRNOT00000071076 2 2 2 80 11 84522582 84522601 GGAAGGAAACCTCAGAAAGG 58 84527814 84533118 GCTATGATACCTGTCACAGTC 58 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 2 2 2 80 3 161416520 161416539 CCATGTATCACTACCACGAG 58 161416582 161417389 TAGAGCCACGACCATACAG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079738,ENSRNOT00000080419 2 4 12 80 20 3352488 3352677 TATGTTACAGAAAGAGCGAGTG 58 3352717 3352736 TTGTTCAGGAACTTGAGCAG 59 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000073268 3 1 2 84 4 123489645 123494345 GATGAACACTGTCCAACACTG 60 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 3 2 2 103 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690389 23690407 ATGTGGAACCTGAACACCT 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 1 2 2 92 16 20888663 20888681 CAAGCATGCACTTACCGTG 60 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428 1 1 2 80 16 20883161 20883179 GAGAAAGAAGCAACCAGCC 59 20883010 20883119 CTTCAAAGTCTGGATCTCCTG 58 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428 3 1 2 81 16 20883161 20883179 GAGAAAGAAGCAACCAGCC 59 20883009 20883119 TCTTCAAAGTCTGGATCTCCTG 60 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000090668 2 1 3 80 13 85378358 85378379 ATCATTCCTAGAGGTGCAGAC 59 85377156 85377177 GTTCAGGATGTCCTGTATATGC 59 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 2 2 2 80 7 126661150 126667203 TCATCACAGACACCCTCTC 58 126667247 126667265 GGGACTCATCTGTACTGGT 58 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 2 3 3 84 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63080 63098 GCAACTGAACAGTGAGAGG 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850 1 1 3 80 X 72386419 72386442 GACTAGATGGAGCACTAAATAGAG 58 72380548 72386380 AAAGCCCGTGACATTTCTG 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000006773 1 2 4 80 7 51431864 51431882 CTTCCTTTCCAGCACAAGC 60 51431435 51431821 CGATTTGAGGTACTGCTCTG 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826 2 1 2 80 6 128653830 128653848 TGGAAGATCTGCGATACCG 59 128652777 128653786 CTGGAGAACTCTCCGTCAG 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949 3 1 5 90 11 81423626 81423647 GAACCATGATGATTTGATCCCT 59 81423547 81423575 GTGGGAAGTTGTGTCTGGA 60 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 1 2 2 118 7 11436250 11436268 TGCGAGAAGGTGATTCAGG 60 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000090183 2 1 3 150 14 34760887 34760906 TCTGGGAAAGACTATGTTGG 57 34761018 34786348 CTCACAGTTCTTCAGAAGCT 58 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000083941 3 1 2 94 15 33725038 33725060 CTCTTCTCCAATGCTTATCCT 57 33724964 33724982 GAAACTGAGCAGCATAACG 57 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 3 1 1 60 3 61686342 61686362 GGATGAAAGTGAAGAGGAACG 59 61686694 61686712 CTTGTGGCTCCATATTCGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 2 2 8 80 6 128050870 128052894 CCTATTTAAAGGCAAGATGCAG 58 128052935 128052953 GGGATCAAAGAGTCCTTCC 57 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888 2 1 2 156 13 103157819 103157840 ATTGTTCAGTTCGGCTCCT 59 103171314 103171332 CTGTTTCTTCCCATGCTCC 59 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 3 2 2 80 8 94841371 94841392 TGACTATACCTGGGAATACGAG 59 94841431 94850098 ACGATGGAATATTTGTGAGCC 59 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922 2 1 2 81 5 124442464 124475898 ACCACAATGGAAGAGGAAGG 60 124475939 124475960 CTGAAAGAGGTACAGCATTGAG 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349 2 1 2 80 17 82085632 82085650 TACCTCACCCTCAGTTCCA 60 82085693 82086801 TTGGCATAACCCTTCTCCTG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627 3 1 3 80 9 73418545 73418566 AAGAAACAGTTAATCTGCCACC 59 73418607 73429565 TCTTCGAGGCTTCTTCCAG 59 NA Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 1 2 2 80 4 160536060 160536079 CATCGTCCTGTTGATCATCC 59 160535756 160536017 TTCTCGTTCACCTTGTCCA 59 NA Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 2 2 2 80 6 132099609 132104004 GATGACCCAAAGGAAGAAGTC 59 132104044 132104064 CGGATGCTCTACTTGTAAGTC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 3 5 9 92 9 81537272 81537290 TTGGAAAGGTGTTCATGCA 58 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000091015 1 1 2 130 13 53149092 53149110 CTCATTGCTGTTTGGCTGG 60 53148268 53148595 GAAAGATTCTCTGAACTGGCAG 59 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052 2 1 2 137 10 109964975 109964993 GGAGAACTTGCAGAAGCTG 59 109943872 109964575 TCAAATAATCGTGTAGGGTCCT 59 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000020886 3 1 2 81 1 218704417 218704435 GAAACACTCAGCCTCACTG 59 218700124 218700412 TTTCTTCCTCACGGTAGGA 58 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350 3 1 2 81 3 148422368 148422388 CACTTCAAAGAATGTGTCCAC 58 148421243 148422326 ATATACCTGCAAAGCAGTGC 59 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600,ENSRNOT00000041639 3 2 2 110 14 77326629 77328658 TCAGCCAGTATTTCAGGAGTC 60 77328729 77328748 ACATGAAGTCCAGGATCTGC 60 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600 2 1 2 80 14 77329726 77332455 TCTCATACAGGTGAGAAACCT 58 77338365 77338384 TAAGTGAGTCTGAAGGTTGC 58 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000067895 2 1 2 174 4 161652910 161652929 AAAGCAAGCCTCAAGTTCTC 59 161652753 161652773 GAGAGTAAGGAGGACCCAG 58 NA Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 1 1 1 81 9 98113382 98113400 CTAAGCTTGGTCCTCCCAG 60 98114095 98114114 AGGCAGGATTGATATCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 1 1 1 60 13 49935404 49935423 TCTGGAGAAAGATACACCCA 58 49937867 49937888 CAGTAACTTCTTCAAGGAAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 1 2 3 80 19 10190008 10190845 CTACGTTTACAGGGTTATCAGG 58 10190886 10190904 GACGCCCAGTAGTAAAGAC 58 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838 3 1 2 87 9 73947497 73958255 GTCTGCTATTAAGATCGAGTTCTC 59 73943497 73943515 CTTGCATTCACCGGTTCTG 60 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617 2 1 2 85 1 281825480 281834167 ACAGCCTAATGCAATGGGT 60 281825413 281825431 TTCAGATTCCACAGCTGGG 60 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253 2 1 2 81 2 259591949 259591967 GATCTACGTGACCACGGAG 60 259382754 259591905 AGACTGGACTCTGTCTTTCC 59 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512,ENSRNOT00000044972 2 2 3 86 13 49407440 49413712 GATGGATCTGACCCAACCC 60 49407372 49407395 CATTCAATCAGGATGTTATCTCGG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 3 5 5 98 10 70167494 70167513 CAGTACCTCCTACCTCACCT 60 70163985 70167433 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 1 2 2 81 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819206 109819226 CTGCTTCTCATTCTTCAGCTC 59 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 2 2 2 80 14 86394418 86394437 GACCATCAGATTTGTCTGCA 58 86394130 86394377 GATATCCAAGTGTACACGCAG 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 1 2 2 80 3 45111143 45111164 CCTTTGAAAGACTTCATCAGGA 58 45111007 45111104 AAGAGTGACCTAGTAACTCCA 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989 1 1 2 92 3 172387979 172387998 ATAAGAAACGCAGCAAGCTC 59 172388053 172424546 CTCCAGCACCTAGAAGCAG 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000087107 3 1 2 159 9 15122958 15123294 TCCTCAGTACAGTCACCAG 58 15123416 15123435 TTAGGACATGTCCTCTCCTG 58 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 3 2 2 80 6 132943696 132943716 TATCTGGAGATTGAGCTGAGG 59 132942510 132943655 GTAGTTGCTCTGAATCCTGC 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000003526 1 1 2 80 17 90715783 90717879 GGCCAAGTCATTAAAGAAAGAC 58 90715724 90715744 TCCTTACTCTCCTGAGTATCC 58 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000068199 2 1 2 80 3 63412286 63421102 CAACTGCAGGTTCCTTTCAG 60 63421144 63421163 CTCAATGTCTGCACAAAGGT 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230,ENSRNOT00000059814 3 2 3 80 14 34168170 34172747 CTCTTGGAAGAATCTGTTCCA 58 34168110 34168130 CTCTTGGTACTCATCTACTGC 58 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147 2 1 2 162 1 74999560 74999578 TCTACCATAGCACCAAGGG 59 74999702 74999725 TAGAAACGTGATTTCTCCTGTC 58 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000066377,ENSRNOT00000090576 3 2 3 119 3 21838990 21839008 AGAGGAACTCTGACAAGGG 58 21831766 21834222 CTTGGGCAAACCATATGCA 59 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 3 2 2 80 1 80096282 80097762 TGATGACATCAAATGTCTGGC 59 80097804 80097822 CCTTCCTTTGTGGTTCCTG 58 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000086409 1 1 2 81 3 140024121 140024139 GTATAGCCCTCGCAGTCTC 60 140024184 140045044 CTCACCATGCTGAGAATGC 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202 1 1 2 80 12 30151051 30180041 TATGAAGATTGGAAGGATGCG 58 30148253 30148271 CTGCTCTTTGAGGTCTGTC 58 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 1 3 3 80 10 88428100 88428119 GAGGTCACCATCTTTGTTCG 59 88419947 88428058 AGTGGTCTTCCCAACTTCTC 59 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 3 3 3 80 10 88410810 88413057 TGAACTATGCACAGATCCG 57 88410748 88410766 CCTTCTTGATGAGCTTCCG 58 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 1 2 2 80 12 25208984 25209004 CAAGGCTACCAGTCATATCTG 58 25209046 25210544 GCTTCTGCAACATACTGCT 59 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000045050 3 1 2 90 14 36188573 36188591 AGAAAGAAGCAGCACTTCC 58 36174392 36188519 GGTAATCTCCTGCTTGGTG 58 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448 3 1 2 80 14 36172974 36172992 TCCTCCATTTCTTCCACCT 58 36161993 36172934 GGTACAGTTATTGGAATACCTGG 59 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 1 2 2 80 7 2781928 2781951 CTTAGAGACTATTTGGCGATTCAG 60 2781642 2781892 TCAAAGGAAATCGAGAAGTCCA 60 NA Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 2 2 2 80 20 30708891 30708910 AGAAAGCATCCTAATGGCCT 59 30707556 30708848 GGAGCCACAATTTCTGGAG 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 1 2 3 81 11 82753120 82753140 GCTGTCAGTCTGGTATTTCTC 59 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 2 2 3 86 11 82753129 82753147 TTCAATGGCTGTCAGTCTG 58 82749916 82753080 ATCTCCACTCTTCTGAAGGG 59 NA Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 2 2 2 80 14 37116690 37120552 CAACCTGCTTATTACACTTGTC 58 37120592 37120611 CTCTCATGAAACTCCAAGCT 58 NA Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 3 2 2 80 14 37121551 37121571 GAGACTCATGAGTTTCACCTG 59 37121612 37121907 GTTGCTGGTGATCCTTTCAG 59 NA Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 2 2 2 92 5 127165229 127213365 AACAAGTGCATGTTCGAAGG 60 127213420 127213438 GTATGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000082105 1 1 2 80 6 64268241 64281429 CCCTTATGTCCTAAGGATGGAG 60 64281467 64281488 TGGCCAGATACATTTACATTCG 59 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054 2 1 2 81 1 100710256 100710277 CCATCAAGGAACTAAAGAAAGC 58 100710501 100713335 TCCTCTTTGAACGAGTGAC 57 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000016376 3 1 2 85 1 114317200 114317218 AGAGAAGGACCCTAAGAGC 58 114317265 114318685 TTCTCACCATGTAAAGCTGTG 59 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 2 2 3 80 10 35877249 35877269 CTTGAATTCTACAGCAGGAGC 59 35877311 35878041 CTGGACTGGTTTGACAAGC 59 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 1 2 2 80 19 1037448 1038888 CCATCGACAATTCTGGACTC 59 1037387 1037407 CCACCACGATCTTGTATTCAG 59 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937 1 1 2 94 4 155537268 155537633 CTGACTCAGAAGGGCTCAG 60 155537691 155537709 ACTGGAAGGTTTCCAGACG 60 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 2 3 3 80 1 82579639 82579657 TGATAACACCCAGACCCAG 59 82579265 82579595 GCTGAGATTCTGAGCTGAC 58 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000080840 2 3 4 84 1 81796496 81796515 TAAGACCCTTCCTGTCTCAG 58 81796562 81796899 CATGAAAGGCCTGTCTGAG 58 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799 2 1 3 90 13 113840134 113840153 TAGAAGGCAGTTCTCAGAGC 59 113836273 113840086 GGGAGTTTACATATCACTTGAGAG 59 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 2 2 2 80 1 257636715 257636733 TTGTTTGTGGCCCTTTGTC 59 257636774 257637944 ACAGCAAAGTAGGAATTTCTGG 59 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 3 2 2 80 1 257615243 257620410 AAGATGTTAGAAGAGGCTCG 57 257620452 257620471 TTCAAGCAAATGTTGCAGTC 58 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000091167 2 1 3 82 15 35018101 35019072 ACTGAAGGAGGTTGAAATGGA 59 35020143 35020161 CACAAAGCTGGATGGAGTC 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000016221 1 1 2 80 10 13967964 13967982 CAAGTCATTGTCAGTGCCA 58 13967285 13967920 GAGGAGAAAGAAGCCACTG 58 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596,ENSRNOT00000055285 1 2 2 80 7 144867693 144868614 GATTTGGCAATGATGGAAGC 58 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596 2 1 2 80 7 144867693 144868615 GATTTGGCAATGATGGAAGCT 60 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596 3 1 2 80 7 144867695 144868615 TTTGGCAATGATGGAAGCT 58 144868659 144868677 GTTTCCTCCTTTCATCGGT 58 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140 1 1 3 103 1 231498135 231498154 TTCCTTTCCTGTCCCAAGAG 59 231458533 231482703 GAGTTGTTGCCCAATGATGG 60 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018272 1 1 3 80 1 231498158 231498176 AATGCTATCTGTGCACAGG 58 231458504 231458526 CCATGTCCATGATAAATGCTG 58 NA Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000087680 1 1 2 81 1 276306833 276306851 TTGTAAAGTCTGCCAAGCG 59 276305411 276306794 GTCCATCTTCATTACACATCTACTG 60 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000091557 1 1 3 80 18 15494227 15494555 CATGCTCTGCAATATTGGGT 59 15494595 15494616 GTCACTTGTATTATTGCCTTCG 58 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000088909 2 1 2 80 15 103323263 103323282 GGCGAAATCTACAACATCGG 60 103322268 103323225 CTCTTTGATCAGCTGTATCAACTC 60 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000046025 1 1 2 182 1 189262341 189262359 AGCACATATGGACGAGGAC 59 189262767 189264566 AACGCCTTTACCACCTCTC 60 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 2 2 2 63 15 34342123 34342143 CTGACTGGAAAGGAGATTGAG 58 34341771 34341789 GCTCCTTGATTCGTTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000088049 2 1 3 120 5 127651567 127651586 CTTGCTGGCTTTGATGACTG 60 127648926 127651080 CTTGAAAGAAGGCGTGGTG 60 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910 2 1 2 86 4 28646759 28646777 CAATGCAGTGGGAACTGTC 59 28637801 28646712 TGCAACTTATCACTTCACTGTC 59 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000065145 3 1 2 83 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102340957 102344232 CTTGGTCAGATAGGTGAGCT 59 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129 1 1 2 81 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102342693 102344233 AGTACAAGGAGGTGAGCTC 58 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 1 1 2 108 9 105944572 105944591 TTATAAGGTGCTCAACCGTC 58 105945337 105946148 GATGCTGAACTCATTGTTCAG 58 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 2 2 2 81 13 50987629 50987647 TGACTGGGAATACCCAGGA 60 50987690 50987907 TTTGGCCAAATCCTGTATCAG 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000079004 2 1 3 135 2 123348733 123348752 CTTCAGTCTGGTCCCTAGTC 59 123333940 123348638 CATTATCTGCCTGGACTTTGAG 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 1 4 7 88 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714910 83749626 ATGTCATAGAGCTGCCCTG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042 1 1 2 91 4 123521989 123522007 CTGGAGTCTGAGTTGGAGG 59 123518818 123519631 ATTCTGGTTATGTGGCTTCTG 58 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 3 2 2 80 4 57561510 57561533 CAAACATGAGGTTACAATCCTAGG 60 57560183 57561474 CCTTCATATGGTGTTCCTTGTG 59 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 2 2 2 80 13 67602887 67602907 AGTGACACTTCACATTTGCTC 59 67600980 67601632 CTTGCTGAACTCTTTGGATCG 60 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 1 1 1 60 8 117932180 117932198 CTCCTGGACCTGGATTCTG 59 117931634 117931655 TCACATACTTGGGAGTATCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 1 2 2 91 10 35713753 35714015 CATTAAAGAGAAGAAGGAGTGC 57 35713683 35713701 CATCACAAATCACGTTGGG 57 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 3 2 2 94 1 197999339 197999357 TTTCTGGACCCACAGAGAC 59 197999415 197999731 ACTGAAGGAATCCAGTGCT 59 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218 2 1 2 109 8 116273542 116273564 CCTATAAGGAGTACCAACTACAG 57 116274207 116275429 CTGATTGGCAACTTGACCT 58 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 2 1 2 80 3 114921002 114921021 GATTCAAGATAGAGTGGCGG 58 114921061 114925705 TATCTGTAGGAGATCTCCTTGC 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000082627 3 1 2 82 2 104785122 104785140 TACTCCACTGCCATGTGAC 59 104785184 104799772 CTGAGACGATGCTTGATTTGG 60 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 2 3 4 80 17 4256770 4256789 TGCACAACGAGGACTATCTG 60 4256829 4270842 ATTCTGTGTTGGTCAAATCACC 60 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 2 2 2 80 19 10877888 10879304 GAAGCTGGATAAGAAGGACCT 59 10877828 10877846 ATCCACTTGCCGTCATCTC 60 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846 3 1 2 80 13 53304200 53304218 ATGAAGACAGTGCTTCTCG 58 53304261 53309105 TATGACAACCTTCACATGCT 57 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000026719,ENSRNOT00000087595 2 2 5 80 9 97975327 97975345 TCCCTTACAAAGCATGCTG 58 97973112 97975286 CGTTTGTTTACGTGAACTTCTG 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311 1 1 2 102 10 59868434 59871367 CTAATCTGCAGCTGGAGGA 59 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603 1 1 2 82 9 92628694 92628713 TCACAGGACTGTACAAAGGA 58 92628757 92633478 TGTAGGATGCTTCCCTAACG 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930 3 1 2 80 4 86127133 86127514 TGGACTCTGAATTCTTTGTCTC 58 86139211 86139230 TTCCTTGTTCATGCAAAGGA 58 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072396 3 1 2 81 5 129257650 129257926 TTTACGATTGTGAAGGGTCTC 58 129257969 129257987 GTAAGGAAGAGGTCCAGGG 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 3 2 2 86 5 165924827 165924846 ATTTCCTCTGTCTCCCTTCC 59 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000037296 3 1 2 83 12 31353728 31353747 ATCATGAAGCTGGAGACCAG 60 31353792 31355424 AGACAGAGTCTGAGTCTCGA 60 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 1 2 2 80 16 24981003 24982622 AGAAGGAAAGATTGAAGACGG 58 24983634 24983652 CCAGATGACTGTGAAACCA 57 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 1 2 2 80 18 16541463 16541481 GATTCTGTGAGTGAGCCCA 59 16539871 16541419 TGTTGCATTGAAGCACTCC 59 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850 2 1 2 82 1 8878087 8878107 GTTTAAGAGCATACAGCACCA 59 8860021 8878045 ATAAACGACAGTAGTAGGCCA 59 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 1 2 2 82 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861227 58861245 ATTTCTTCAGCTCGTGGAG 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 1 2 5 81 11 78309227 78341322 ACTCAATTTAGTGAGCCACAG 58 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000012112 2 1 2 82 5 129170523 129175593 CGTCACCTAATGGTTTCTTTAGTC 60 129170464 129170485 CAAAGCAAAGAATCCAATTCCC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000014709 1 1 5 98 2 1500245 1500267 CAGAGTATAGGAAACTTCTGGAG 58 1455435 1499064 ATGTTGCATCTATAGCATGGTC 59 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704 2 1 2 86 5 173337574 173337593 ATCCCTTGGGCAAGTATCAG 60 173336876 173337525 TTTCCCAGCCAAAGTTGTC 59 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000057216 3 1 2 81 5 128881532 128881868 AAAGCATAAATCCCTTCTCCAC 59 128881906 128881928 CGGAATTTACCGTAATCTGACTG 60 NA Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 3 2 2 80 10 55431558 55431579 AGCAACTGCATAAGTATGTGAG 59 55430514 55431518 GTGAAACTATTGTTGCCCGT 59 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885 2 1 2 80 16 39849489 39852125 AACTCGACAACATCAAAGAGAC 59 39852166 39852184 TCTGGGAAACAAATGCCAC 59 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 2 2 2 80 11 37928521 37929113 TACGAAGGTGATAACTCTGAGC 60 37928462 37928481 ATGAGTCACCATGAACAGCA 60 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000034642 1 1 2 101 14 38111106 38116056 ATTACCAGAGCAGTGGGAG 59 38111023 38111041 TATGAGAACGCTCAGAGCC 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 2 4 8 80 1 226463366 226467007 AAGCCATCAACGACCTAGAC 60 226467050 226467068 TGGGAGGATAGGAACTCCA 59 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 2 2 2 81 4 115265432 115271512 TACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 3 2 2 82 4 115265432 115271513 CTACAACAAGTACATCACGCTG 60 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 2 2 2 80 2 114366872 114366890 GGACCCTAGAGTGTACCAG 58 114366934 114367711 CTAGTAAACAGGGCAGCAG 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 1 2 6 80 1 41532721 41561428 CTCTTGGACAGGAATCAAGG 58 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000080404 1 1 2 81 10 17498158 17499876 CAGAGGCAGGAGAGTATGC 60 17510922 17510940 GCTTGGCTACAAAGTCTCG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000083194 2 1 2 80 8 22292926 22292944 ATGCTACCATTTCGAGGGA 59 22293069 22300247 GGTAGAGCAGAAAGTCATAGTC 58 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206 1 1 3 132 5 167983329 167992640 AAATGATGAACGGCAGCTG 59 167983215 167983237 CTTGCTGTAATATCCTTGAGGAC 59 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646 1 1 2 80 17 10040949 10040971 AAGAGATACCTAGCAATCCATGG 60 10039056 10040909 TCTGCTGCTCTTCTGATCG 60 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 3 2 4 80 4 163845294 163845313 GATGTAAACAGACCTGCCAG 59 163838420 163845251 GGAACCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893 1 1 2 80 6 146826722 146826743 ACGGTAGTGTCATTAACAAGAG 58 146825916 146826681 CAAGGCATTTCTGTGTTGG 58 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 1 2 2 80 10 55493240 55494307 GAAGTTCAGGTTGTTCGAGG 59 55494345 55494368 GATGACGTATTTCTTCCTGTACAC 60 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 3 2 2 80 10 55493178 55493198 CGCTTTCCAAAGAACTGAGAC 60 55493239 55494306 CTCGAACAACCTGAACTTCG 59 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 1 3 3 86 2 200798231 200798249 CAATGAAGCACAACGTCCA 59 200798297 200806602 TCAGAGCATCAATTGAAGCAG 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000082672 1 1 5 80 3 8569586 8571784 GACAACCAGTATCAGTCTCTG 58 8571823 8571844 CAACATGAACTTCTTGCAACTC 59 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 1 3 3 100 6 136151627 136151646 TTCTGTGGTCTGTGAATCAG 58 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000035907 1 1 2 137 9 15690649 15695728 GCCTCAAACAGGAAATCCC 59 15690530 15690548 TATAGGAAGAAGGCGGTGG 59 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000035907 2 1 2 138 9 15690650 15695729 AGCCTCAAACAGGAAATCC 58 15690530 15690548 TATAGGAAGAAGGCGGTGG 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 3 3 5 111 14 71542387 71542405 CATCTTCCTCAACGTGGTC 58 71572868 71579460 TTCATAGATGGCGACCTCC 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968 2 1 2 81 18 27422841 27422859 ACAGAACCATGGTCCATCC 59 27414128 27422800 TAACTGATACCCAGTTCTGATCC 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 1 3 3 80 13 56982487 56991080 GAAATGCAAAGATTCAACAGGG 59 56982428 56982448 ACTGGTAATGACAAGGAGGTG 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 2 2 3 80 13 57008731 57008750 ATTTCTACTGAAGGGACCCA 58 57008585 57008691 CTCTCATACTCAACGCATATCG 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000021152 3 1 2 117 9 79523411 79544937 CTGGTCAGTGGTAACAATCC 58 79523313 79523331 TCCTGTCATCATCTGCCTC 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 3 3 4 80 10 24017204 24017223 CGACTATGGTTTCCAGAGGT 59 24017266 24035406 AGGATCACTTCCTTTGGCA 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158 3 1 2 81 9 16072970 16074238 GATAAGGTATAAGAGGGCATCAG 58 16076392 16076410 AGACAGAGACACGATAGCC 59 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000057758 3 1 2 106 4 133125805 133126954 CTTTCTGAGGTTAACACTTCCTG 59 133121694 133121712 GAGTTTCCTTGGGCAATCG 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 1 2 2 80 18 26576489 26577883 GGAAGCATATCCAGAAGGAG 58 26576428 26576449 CCACTTTAGTGTATGGGATCTC 58 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000090751 1 1 2 99 4 27244946 27246513 TGGAGCAGAATTTCTACAGG 57 27244866 27244884 CACTTGCTTCTGTAGGTCG 58 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005 2 1 2 80 16 48320931 48320950 ATGGCATGGATATGACAACG 59 48316300 48320891 CTGAAGTTCGACTTGAAATCAG 58 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894,ENSRNOT00000091565 1 2 2 60 9 16538286 16538304 AGCTTCCACAGACAGAACC 60 16538892 16538910 CAGTACCTGACGTTGTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 3 2 2 96 9 16465603 16466087 CCTCGATCTTATTGGAGACCC 60 16466224 16466242 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000085235 1 1 2 85 5 135257449 135257467 TCTCTTGGACAGTCTGCAC 59 135197073 135234802 TTACTCGTCCGACAGAAGC 60 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000017195 3 1 2 80 13 56874853 56874873 TTCAAGTTCCTTCTGGAATCC 58 56873879 56874813 AAGAAGCAGATCCTTAGACAC 58 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000008312 2 1 2 80 6 56036505 56158174 AATCACTCACAGGATGAGC 57 56158217 56158236 TCTTTCCTTAACCAAGGCAG 58 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 3 2 2 81 2 12102691 12104240 TTTAGCTCTGAGAGGTGAGC 59 12104281 12104302 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140 2 1 2 104 2 203386766 203386784 CTGAGTGGCAGCAATATGG 59 203376808 203386699 AAGAGAACGTGGACTCTGAG 59 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 3 1 2 80 7 117000764 117001093 GAATGAACTGGGATGCTGTG 59 117001135 117001154 CATTTGTCAACCCATGGCTC 60 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287 3 1 3 98 18 25209467 25210987 AAAGAAGAACAGTGACAGCG 59 25211047 25211066 TGGTTCACTCTGATCTCAGG 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000089310 3 1 2 91 17 15782619 15782638 CGCACATTCATCATAACAGG 57 15784433 15785054 GCCTGAATGACCTGAATCC 58 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 3 2 2 80 5 131933736 131935458 AGGTCACAGCTATAAACTTACG 58 131935496 131935517 CAGAGTGACATTCCACTATCAC 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000091113 3 1 2 107 9 17107088 17107106 GAACAGCTACACAGCATCC 59 17107414 17108137 ATCTCAGCCTTCTTGATTGC 58 NA Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 1 2 2 80 7 120602154 120602173 CTGTGCTATGAGTACCTTGG 58 120601962 120602112 ATACATACAGCTGGACTCGA 58 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000083764 1 1 2 82 9 17208178 17208197 TCCTTCAATGTGGAACTGTG 58 17204707 17208133 TTCCATCTTCAGCCTCTGG 59 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 3 3 3 80 1 233135106 233138180 ACGTTTCCAAGTTTGGTGTG 60 233135045 233135063 CACGGACAATCACTACCGT 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 114 18 56316005 56325241 AGTACTGGAGCCGATATGTC 59 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 1 4 4 113 18 56316004 56325240 GTACTGGAGCCGATATGTCC 60 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 3 2 2 80 2 93538141 93539246 CTTGGATGAAGAATCTAGAGCTG 59 93539283 93539304 ACTTCTATGTCTGCTATTGCAC 59 NA Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 1 2 2 80 4 2056432 2060035 CACCGTTAACTTTAGCCCA 58 2060077 2060097 TCACTTTCTCCCATTCATCTG 58 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000086682 3 1 2 80 9 112374957 112396183 TCTTAGAGATGGATCCAGTCTC 58 112396224 112396242 CTTTATGTTCACAGCGCCA 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 2 4 4 80 4 165185219 165185240 GGGATGAATGTAAACAGACCTG 59 165176326 165185178 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 3 2 2 80 9 17821054 17821075 ATCAAATTGTATGTCCGTCGTG 60 17821116 17821273 ACCACGGATGAAGTTGAGG 60 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000078202 1 1 2 105 18 28426417 28427864 CAGCAACTCAGAATGAAAGAG 57 28425933 28425952 CTTTCATCTCTGAGACACGG 58 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 2 1 1 60 14 43834067 43834085 TGTCATTCCTGCGGTATCC 60 43837012 43837032 GTACACAGGAGTTATTGGACG 59 NA DesignNoJunction Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088724 1 1 4 80 13 70236286 70236304 TCAGCTTCGAGGGAATCAG 59 70236346 70240739 TTATACAACACCTCACAGGCA 60 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000068407 3 1 2 81 4 156780960 156780981 ACATCAAGTTCAGTACCAAGAG 58 156781022 156784683 GTTTCTTAAATGCCAACCCG 58 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 2 2 2 95 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579102 12579951 TACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017568 2 1 3 89 16 49562101 49562119 GAAACTCGCTTATGGTCCC 58 49554067 49562049 TTTGAATTCCTGCGGTTCAG 59 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 2 1 2 80 1 85499730 85499847 ACCTTCTGGAGTTTGAGGAG 59 85499887 85499908 AATGGATCAATTTCCCATCCAC 59 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 1 2 2 154 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664473 15664491 TTTCATGAACATGCCACGG 59 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000086385 1 1 2 134 1 218512743 218512761 TCTGAAGGCACTTCACCTG 60 218509665 218512645 CACAGCCATGGATCTTTCG 59 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 1 2 3 80 3 121835304 121835328 AAAGAACTGCTATAGGGAAACG 59 121831738 121831759 CCATAGCTTGCATCATAGAAGG 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 2 2 2 86 8 85513346 85513366 ACATACAGCTACTAGAAGCCA 58 85513414 85514557 TCTTAAATGCCTGCAGCAG 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 3 2 3 80 11 34080916 34080937 AAAGTTACCAGACGGGATAGAC 60 34080976 34081101 TCACAATTTCTGAACTGTGGG 59 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 1 1 1 95 16 9074178 9074196 GACACCAATCAATGGGACG 59 9075380 9075398 TCATTCCTCCTCATGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810 1 1 2 80 1 217679940 217680303 AAGCTTAGGAAGGCTGAGG 59 217679878 217679897 ATTCTTCTCCTCCAGCTGTG 60 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852 3 1 2 83 5 150726749 150726769 CAAGCAGTTCACATCTTCAGG 60 150726812 150728272 TTGCTTCACATGCTCATTTCC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643 1 1 2 80 4 11146272 11152038 GAATGGATTCCTCTGGTCC 57 11146210 11146229 GGATTCTGAAGCCAAATCCA 58 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000084933 2 1 2 85 7 70336511 70336531 GATGGTGAAATGGCAGAGG 59 70336581 70336599 TCCAGAGTTCCAGCATAGC 59 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 3 3 6 87 9 17351564 17351583 AGACGTGTAAATGTTCCTGC 59 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 3 2 2 81 2 18412045 18415166 CATCCAACTTCAATGGCCG 60 18415211 18415229 TTGAGACAAGCTTGCACTG 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575 1 1 2 80 1 167223845 167223864 GTATTTGCTTCCACCAACTG 57 167222677 167223803 TCACCCTCACAAGTATTCTG 57 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575 2 1 2 80 1 167234106 167235725 GCTGTTAAATCTCTATCTGAATCCC 60 167234050 167234068 ATCCTCATCCAGCTTCCTC 59 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 2 3 3 102 3 22947757 22947775 AACTTGGAGCTCCACTCTC 59 22938848 22947695 CACCAATGTAACCTTGATACCTG 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 2 1 5 80 20 5416910 5416928 GCAGCTGTGATCATTGGAG 59 5416971 5417164 GGTGTAGACTCCTCCTTTCC 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744 1 1 2 82 8 25853521 25880795 CATCGAGAGGGAGAGTGTG 59 25853457 25853476 CATCCTCCTCTCCATAGGTG 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 1 2 4 80 7 120533011 120534635 TAAACAACCTAGAGCTTCAGGA 59 120532952 120532970 CATCCCTCATGGAGCTCAG 60 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 1 2 4 80 7 120533011 120534635 TAAACAACCTAGAGCTTCAGGA 59 120532952 120532970 CATCCCTCATGGAGCTCAG 60 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995 2 1 2 82 13 69984265 69984289 CATCTTCTTGTCAACATATAGAGGC 60 69962599 69984228 CTGTCAAGTTTCCATACCTGTC 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000067176 2 1 3 82 12 41202607 41203217 TGTCCTAGCATACCAGTCC 58 41205302 41205320 ATTCGGAGATGAGGATGGT 58 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683 3 1 2 81 9 100932614 100934934 ACTATCTGGACAGCATTGAG 57 100934978 100934996 TCTGTTCTCTGGTCTAGCT 57 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 1 4 4 80 16 54382448 54383439 GGCAATTTCAAGACAACTTTCC 59 54383478 54383498 AACCTCTTGTTGACCTTTGAC 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929 2 1 3 112 17 30557835 30620750 CTGTATAAGCAGGCCACAG 58 30621143 30621161 GATTTGAGGTCCATGGCAG 59 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506 1 1 2 150 14 820036 820056 GTGATGTTGGTTACAGTGGA 58 820173 820191 ATGGAGGATGGAACCTGAG 59 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631 2 1 3 80 16 10921115 10921133 AATCTTGGCCCAGATGACC 60 10915988 10920605 TCAAACCTTTCCCTTGACCT 59 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 1 3 3 80 6 76461468 76461489 TCTCACCAATATAGGAGGAAGC 59 76455476 76461432 CAGTGATTTGTAAGGTTTACCTCC 60 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150 2 1 2 87 10 87227651 87227753 TGGTTCCAAGAGAAGAGCG 60 87227582 87227600 TTTCCGTCAGCTCATTCCT 59 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 1 2 2 80 4 148432877 148432896 AGATGACCAAATCCACATCC 58 148417360 148432835 CACTCCATCCATCGATACTG 58 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000092104 1 1 3 199 5 12504491 12526915 GAAGGTTGCATATGATTGCTC 58 12498749 12504330 CGATTTCATCTGCAGTGGA 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 2 2 3 84 1 135365201 135365219 TGAAAGCCTTAAGCACAGC 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 1 2 3 80 20 5094134 5094152 CGAGTGATGACAGAGGAGG 59 5094193 5094290 ATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 1 2 2 92 7 121311156 121328653 GTGTCTTGGGTCTTCTCCA 59 121328708 121328727 GTAGATGCAGAACTCCTCCT 59 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 3 2 2 80 10 58368975 58370203 ACTGGAAGAGCAAAGAATGG 58 58370246 58370264 ACTTGAGCCAGTCTAGGAC 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786 2 1 2 89 1 255564512 255582142 GTCTCCAGACTCGATCGTC 59 255582194 255582213 CACTTCTCCAAGTTGCTGTG 60 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 1 1 2 80 4 39532674 39533455 GTACTCATGATGCAAGTTACTG 57 39533495 39533514 AACATACTGGTACCTCTCCT 57 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 1 2 5 80 2 258868226 258932037 AATACCGAAGGTTTCAGCAG 58 258868165 258868189 GTCTATAGAATAACCTTCACAGGAC 59 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 3 2 2 90 16 48122373 48210099 GTTACATGACATCAGGTGATGTG 60 48210149 48210167 GCCAAGCAAAGGATTTCCC 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 2 2 2 81 1 127589307 127589325 CCTTGCTCCATTTCTCTGC 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 1 2 7 80 19 15108361 15110227 CTCTGTTCTTGTGTTGTCCC 59 15110270 15110288 TCAGTAATGAGGACCACCC 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 3 2 7 80 19 15116797 15116815 AAGAACTTCAACACCGTGC 59 15116857 15119210 AAATCTCATCATCGTTGGCAG 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000085762 1 1 7 80 19 15192670 15192689 GGTTATCTTCAGATTGGCCC 58 15192742 15192763 AGCTGTAAGGCCAGTACAG 59 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 1 2 2 83 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932494 204938630 TACGCTATGCACCTCAGAG 59 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000009693 2 1 2 80 6 105465157 105467550 GTCAGGAGATGAAGGATCCC 59 105465096 105465115 AAGTGGAAGTGTGGAGACTC 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 3 3 4 80 14 79355837 79387344 CTTCACAAGGAATTTGCTTGC 59 79387385 79387404 TTTCCAAACAGCTTCCATCC 59 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 1 2 2 80 8 56236904 56239226 TGTTAGGGATAACTGGCTCC 59 56239269 56239287 CAATGAGTGGGTATGGTGC 59 NA Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 3 2 2 80 9 25433010 25433031 AGTATTTGAACAGACAGCACAC 59 25433072 25436009 TACAAAGTTGCTTGGTGGC 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000055808 3 1 2 81 7 130334332 130334350 CTGTCACTGGATGACTTCC 58 130334393 130334497 GAATGATAAGCAGTTCACTGG 57 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000036748 2 1 2 81 2 24709143 24709163 CCAGCAGGAAATAAAGCTCTG 59 24709207 24711321 TGCAAATACGTTCTCTTCATCG 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000090638 1 1 6 191 1 41635493 41635511 TTCAGACCTACACTGGCAG 59 41635319 41635338 AGATGCTGACTCAGGTCTC 59 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000088705 2 1 2 82 8 117520061 117524681 ACACAGTAGAACAGCTTTCTC 58 117524725 117524743 TCCTTGGTCAATGACATGC 58 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000078412 1 1 4 80 20 12859743 12860302 ATTATCTTTGGCTGGGCCT 59 12858054 12858073 GGACAGCAAATGAAGTGTCC 60 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000051060,ENSRNOT00000042581 2 2 5 116 11 27812387 27831347 AATGACGTTGAGCAGTGTC 59 27812289 27812308 TGTGAAAGAAGATTTGCCCT 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 2 2 2 80 9 27369486 27369505 GCCATTCTCAACTACATTGC 58 27368419 27369443 TGCATACATGTCGATGAGG 57 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403 1 1 2 106 13 84064197 84064215 TCTACGGAGTCATCGTCAC 59 84065446 84066439 GTTGAGCTCGTTATAGAGCTG 59 NA Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342 1 1 2 104 7 11947762 11947782 GAGTACGTGGCTATCAAACTG 59 11947519 11947615 CTGAGGGACACCTTCTGTG 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000028347 3 1 2 80 1 226852047 226853453 CCATTGCCAAAGAAGCTCC 60 226851985 226852006 CATAGTCGGATTCAGAACTGGA 60 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 3 3 3 89 X 15759452 15760173 AGAGTTTCTCAAGCACTGC 58 15759381 15759399 AGAGACTGCACCACTTCTC 59 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 3 2 2 82 1 201442187 201442207 TCTTCGACGGTATTTCATCCT 59 201442251 201447945 ATCCTGAAGGCAGGTTCTG 59 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000045393 2 1 3 87 3 128919310 128922561 TCAAGAAGACCTCAGATGACC 59 128924498 128924516 TAAGATGCCATCCATGCCT 59 NA Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 2 2 2 80 13 80738303 80738321 AGAAGGACTAGAACCCACC 58 80727374 80738260 CCTTCTTCAACATGTTCCGT 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000078044 2 1 3 103 6 3373063 3395691 CTTTCGAGTGTTTCAGGCAC 60 3355309 3355327 TTTCTTGCTGTACAACCGC 59 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000075678 2 1 2 89 7 119702375 119702393 CTACCAATAGCTCTGGGCA 59 119702301 119702321 TTAGAGTCAGGACAGGCCT 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 3 2 2 80 7 134664499 134667680 AAATTTCTGAGTTTGAGGCGG 60 134667722 134667740 CGTCCGTTGTGTTTGACTC 60 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660 1 1 2 80 17 29210778 29210796 TTCTGGAGTGAGGATGAGC 59 29205609 29210737 GAACCATCTCTGAAACTTGACG 60 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 3 1 3 72 1 82832284 82832302 TAACAATGCTGAGAGCACC 58 82832141 82832159 GGTGGTTCCCAGCTTAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000066431 1 1 2 80 7 118168638 118172118 TATCCAGGTGTGGTTTACCAG 60 118159160 118159179 AGGCTGTGCATATCTGTAGG 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 3 2 2 80 3 35220393 35220411 ATGCACGAAGTCAGTTTCC 59 35220455 35220973 CAGAGCCTTCTTCACTTCC 58 NA Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 2 1 1 62 1 31531998 31532016 ACACTGACTGGGAAGATCC 59 31533639 31533657 GTCCAGCACTCTTAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 1 2 2 80 14 3232211 3232311 CCCATTGAGACACTGAGGA 59 3232355 3232373 TGTGTATTTGCCTTGGGAG 58 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 1 2 2 80 2 96497889 96497907 TCCTTTGGGAAACAAACCT 57 96488699 96497845 GACTTGGTGTTAGCTCCTG 58 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 1 1 1 60 11 28979104 28979122 CTATGGCTATGGAGGCCTG 59 28973585 28973603 GTAGGAGCCATAGCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 1 2 2 87 4 170163144 170164059 TGAAATGGAGTTTAACCCAGTG 59 170163078 170163096 TTCAAAGGTTTCTCGCAGC 59 NA Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707 1 1 2 80 1 128614254 128621061 TAGCTCCAAAGGACAATGC 58 128621104 128621123 CAATGACTTCATCCAGGTGG 59 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000078122 2 1 2 80 7 18600681 18600946 TGCAGAAAGAAACTTGTCCT 58 18600620 18600639 GTGAGGATGTTCTTGAATGC 57 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000049303 3 3 5 128 4 176292087 176294946 AAGATCAAGGTGTTTCTGATGG 59 176291980 176292000 GAATCCAACTATAGCTGTGGG 58 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000081925 1 1 2 80 5 136704358 136704377 AGAAGAAGGCAATGGAACAG 58 136704220 136704315 TCAAAGACTTCTGCCTGTG 58 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000016801 2 1 2 87 7 143847220 143851683 GTCTACAATCCGTGGAGAC 57 143847151 143847169 TTATAGACCCGAGGAGGTG 58 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000017453 1 1 2 81 2 143677508 143677526 TAACCAAACTCGTGGAACC 58 143677571 143680513 GTCATTGCAGGTCCTTCTG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000078720 2 1 2 83 8 116375784 116375807 GGGAATATCAACTCAATGACTCAG 59 116371068 116373568 ACTGGAAAGGGATATAGTCACTC 59 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000034889 3 1 3 85 10 87347845 87348124 GAGGAGCTACATGGAATTACAG 59 87347101 87347120 GGATTCGTCTGTGGAATCTG 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349 1 1 3 97 8 77295641 77295976 AATGACTCTCAGGTGGATGG 59 77295563 77295581 ACTAATCCCACGTTCACGG 60 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 2 3 3 80 3 22884844 22887244 CTACTCTGAGAAGCTTCGG 57 22887287 22887306 TGCACATACTCAATGTCAGG 58 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 3 2 2 80 8 40004702 40007173 GACCAGCCTTAGATACCGTC 60 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482 3 1 2 84 9 94897832 94898064 CACTAATATCTTTGGTCTGTCCG 59 94898731 94898749 GATGGAAGAGACAGAGCGT 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 3 3 3 90 12 37880287 37881531 AGCTGATAACAGACATCATCGA 60 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000048345 1 1 3 80 19 21489623 21491426 TGGAATGCATGTACTGTTGAG 59 21489563 21489582 AGTTGAGTCTTTGCTCTCCT 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000051097,ENSRNOT00000067189 1 2 6 80 5 150125521 150125539 TGAAGGTTGAAGAGAAGCG 58 150116060 150125480 TCTTGTCTAAATCCTTCCAAGC 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000084470 2 1 2 94 9 40984987 40985006 CCCTCCAGGTTACATTCCAG 60 40985366 40985389 AATGTGATCACTGCTGGGA 59 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025600 2 1 2 85 2 205856622 205856640 CCAGCATTACCAAATCCCA 58 205856686 205858230 CTGAGTCAGCTTCATTAAACCT 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 2 2 3 81 20 4534117 4534222 CTTTCCGTAGGTCAGACTC 57 4534266 4534285 GTCATGTCCTCTCCATACAC 58 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 1 3 3 80 12 39866829 39867599 GCTGTCATGGAGGTTTATCAC 59 39866769 39866789 GATCTGGTACATCAGTTGGTC 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 80 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118026 87118044 CCTCAGGAGTAGATGTGCC 59 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510,ENSRNOT00000064756 1 2 3 80 12 44087271 44087289 ATGCAGCCATATGTCTCCT 59 44087330 44103313 CCAAACGTTAAGAATTCCATCC 58 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975 1 1 2 80 4 70965717 70967967 GAAGAAAGAGGCTCGTCAG 58 70965655 70965675 GGTTGTCCATATTTCTTCCAC 57 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 2 2 2 80 7 55149594 55149613 AACAGTACCCAGAGTGACAC 59 55149655 55151648 GTCGTCACCTGATAACACTG 58 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 1 1 1 60 3 123849753 123849771 CCATGTAAGCATGCCTTCC 59 123849059 123849077 ACACTTTCCGGACTTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 3 2 3 82 2 27003598 27003617 TGATGAGGACAAGTGTTCAC 58 27003659 27006173 CTTCATATTCCTCCTGAAGGTC 58 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000024751 2 1 2 190 1 205911558 205911826 AAAGAAATCGTGCCACTCC 59 205911979 205922917 GCGTAGCCTGTGTAAATGAC 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 3 2 2 84 11 31818579 31818598 AGTAGATCTCCCATTCGTCG 59 31818640 31820187 GAGCCTTATCCAAATCTGTTAGAC 59 NA Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 3 1 1 60 3 20457274 20457296 TACTGTCTACAGGGTTATAGTGC 59 20456950 20456968 CTATTTCCCTCTCCCTGCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149 3 1 2 107 10 89478428 89478447 TCCAAGAAGTTCTCCCAGTC 59 89479165 89479837 CATTGTGGTGCCTTGAGTG 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 1 2 2 80 3 148714522 148717230 AAGCTGTATAGGCACATGG 57 148714460 148714480 CTTTCGGTGAAACATCTTGTC 58 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000079792 1 1 2 80 7 91865752 91867158 TTCATGTTGCTACAGCTGC 59 91867200 91867220 GATCAAAGCTACTGCTGAGAG 59 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 2 2 2 85 12 44968641 44968659 GACACATTCACAGGGTGAC 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000090323 2 1 3 95 3 43293235 43294088 GATGTTGAACAGTATAGGATGGTG 59 43294142 43294160 CATTATAGGCAGCGGAGCT 60 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 2 2 2 83 2 29614433 29614454 TGATCTTGCATCCTTAATGGAC 59 29614498 29616642 ATGTTGTCCACAAACCGAG 58 NA Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 2 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726067 TTCTCTGCTGCATAGTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096 3 1 2 101 13 84084290 84084308 CTGGTATTCGCCAATGCAG 59 84083829 84084225 GAAGCAATCTGGGTTGCTG 60 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256 1 1 2 131 9 45205608 45291841 TGTGTCTATGAACCAGATAGGA 58 45204262 45205520 CTTGTTAGTCTTGTAGGGTTCAC 59 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256 2 1 2 133 9 45205608 45291841 TGTGTCTATGAACCAGATAGGA 58 45204260 45205515 CCCTTGTTAGTCTTGTAGGG 57 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000032299 2 1 2 92 5 73937558 73942301 TTTCTGTCGATCCTGGAGTC 59 73937485 73937503 GAAGAGGATGGTCAGCAGG 60 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 2 3 3 122 2 148050380 148050399 GATAACCTGATGTGCGATGG 59 147957465 148050295 ATCTATTTCTGCTGGCGTG 58 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 3 1 1 62 3 137632372 137632392 GAAGGTTTAAGTGAAGATGGC 57 137632327 137632346 TTCCCATTTGGATTCTCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 2 2 5 112 1 215671962 215673426 AGGAGGAAGAGGAAGTCCA 59 215679173 215679191 GTTCTGACGCTTCTTCTGG 59 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327 1 1 2 80 1 71389669 71400184 GTATTCCTGAGGTGCTGGT 59 71389607 71389626 CAGATTCTCCTGCTTCACTG 58 NA InUTR Rattus norvegicus 81 Btbd8 ENSRNOG00000023446 ENSRNOT00000037931 1 1 1 80 14 3292536 3292555 TTGTGACAAGAAGCCATACG 59 3291957 3292495 GACTTCACTGCTACAGTTGAC 59 NA Rattus norvegicus 81 Ddost ENSRNOG00000015079 ENSRNOT00000067228 1 1 1 80 5 156672176 156672194 TCAACGTGGAGACCATCAG 59 156672237 156673222 GAGGGTCACCGATATCAGAG 59 NA Rattus norvegicus 81 Med28 ENSRNOG00000003592 ENSRNOT00000004912 2 1 1 82 14 70095060 70095078 TTGCTTTGCTTCCCTTGTG 59 70094088 70095016 GGATACACTGATCAACACCAG 59 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 2 2 2 80 13 91191369 91195959 TCTGGAAGTGATTTCTGACTG 58 91191309 91191329 CACCTTAATGTGATGGTTTCC 57 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 3 2 2 80 13 91191366 91195955 GAAGTGATTTCTGACTGGCT 58 91191305 91191324 ATGGCACCTTAATGTGATGG 58 NA Rattus norvegicus 81 Sema3b ENSRNOG00000016512 ENSRNOT00000066296 1 1 1 80 8 116358930 116358948 ATCTTTCGAAGCTTGGGTC 58 116357652 116358888 GACAAACTTGGGTTCATTGAG 58 NA Rattus norvegicus 81 AC135400.1 ENSRNOG00000037087 ENSRNOT00000055893 2 1 1 61 7 127081601 127081619 TTGACCGCTATGAATTCCG 58 127081558 127081576 CGAACAAACTAAGGCCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etfa ENSRNOG00000015233 ENSRNOT00000020544 3 1 1 80 8 60065394 60065415 CCCAGTTTCTGACATCATTGAG 59 60063957 60065356 ACTGTACACAATGCATTTCCTG 60 NA Rattus norvegicus 81 Cd180 ENSRNOG00000010266 ENSRNOT00000013768 2 1 1 80 2 32820522 32828825 GGTGCACTGAGAAAGAAGTC 59 32828868 32828886 AGTTTGGTAGAGTGCCAGG 59 NA Rattus norvegicus 81 Ldlr ENSRNOG00000009946 ENSRNOT00000013496 2 1 1 80 8 22763880 22763899 AAGATTGGCTATGAGTGCCT 59 22763938 22764116 CTGACACTCGTCAATATCTTCAC 59 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 1 3 3 83 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552035 89557058 ATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Tax1bp3 ENSRNOG00000019357 ENSRNOT00000056460 3 1 1 149 10 59746509 59747128 AAACAGACAAGGTGAACGG 58 59747241 59747259 GCTATGACAGCATGGACTG 58 NA Rattus norvegicus 81 Ccdc19 ENSRNOG00000008492 ENSRNOT00000011450 3 1 1 80 13 90917247 90919342 CAGAGAACTCATTGTTCCCA 58 90919384 90919403 CATTTGATCCGCTCAAACTC 58 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813 1 1 3 80 14 83345995 83346521 TCCACTTTGACCAAGACCT 59 83346562 83346583 CATGTGTTACAAAGCTCAAGTC 58 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876 2 1 2 131 2 172349988 172361535 AAAGGCACAGAAGAATGAGAG 58 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876 3 1 2 133 2 172349988 172361534 AAGGCACAGAAGAATGAGAG 58 172322173 172349892 CCACTTTGTAGTCTCGAGG 57 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000086967 1 1 5 81 9 28732759 28732778 CATCTCTGCTCCTATTGTCG 58 28664255 28732718 CTTTGGAGAAATTGTTCGATCG 58 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 3 1 2 80 13 36117292 36119486 AAGCACAAGCTTCTACATTCC 59 36117232 36117251 TGATTGCTGTAGAAGGGACC 60 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 1 2 2 86 3 79731719 79731737 GAGGCAATAGACGCTTGGA 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 3 3 3 83 12 46801169 46801917 CCATCTTGGATAAAGTGGTGAC 59 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 3 3 3 120 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050905 5051059 CGGACTCCATCAACCTCAG 60 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 1 2 2 80 2 116364365 116369572 AAGTGAAGCAGTTACCACC 58 116364303 116364322 AGGACACAAAGTCATTTCCT 57 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 2 3 3 81 20 49477824 49484446 AGCAAAGAGGTTATTGGTGTG 59 49477763 49477781 TGTAGACTTCGCCGATCAG 59 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 1 2 2 80 19 25247896 25248000 CTAGAAAGGAAGATCCTGGC 58 25247835 25247853 TACTACGTCCTGGTACTGC 58 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 3 2 2 81 8 128661864 128662076 TAAATGCCAGATGGATCACAC 59 128661803 128661821 GAATTCCACTCGACCATGG 58 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907 3 1 2 80 2 137395579 137396760 ACTTTCCTCACCAGATCCA 58 137394094 137394115 GATATCCTCAGGGAATATGTGC 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001135 1 1 3 94 20 5162965 5163140 CAAGGATTTGCAGGGAGGA 60 5162783 5162801 TGGGATCATCGAGGAAGTG 59 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000090001 2 1 2 84 7 70770617 70770637 GAATATCAAAGGGTCCGAGAG 58 70773492 70773626 CTTCTTTGGAGAGTCTGATGTC 59 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 1 2 2 80 10 91968492 91968510 AAGTAGGACTGGTCGTTGG 59 91966121 91968451 TAGCCTTGCCAATAAGATTGAG 59 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000087824 3 1 2 110 10 91986232 91986628 GTTGTCGGACTATGCAAGC 59 91984569 91986158 TCCTCACCATCACATGCTG 60 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082408 2 1 4 80 9 47030715 47034226 GTATACCCAGCTTCAGATGG 58 47034268 47034287 GTATGCAAAGGATCCCTCTC 58 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038 1 2 3 92 3 176487423 176487901 AGGAGAAGGTGAAAGAGGG 58 176488625 176488643 ATCCCTTACTGCCAACTCC 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 3 3 3 84 8 87270532 87270550 CTAGCAAAGTGACCAGCAC 59 87268994 87270484 CCATCTTGTCCTGACACTG 58 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 1 2 2 80 8 61722492 61722513 AACAGATATGGAGATGTACCCT 58 61722552 61725550 GTAATCTGTCTGAGTGTGACC 58 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 2 2 3 93 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390865 154391143 TGATGCCATCATACTTCTGCT 60 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000060503 1 1 2 97 9 35294120 35294139 CCATAAAGCCATTGACCCAC 59 35294199 35294985 TTCTCCTGTGCTTGACTGG 60 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169 1 1 2 151 1 80609767 80609905 AACCTTAGATCCAGGGTGC 59 80609291 80609310 TTTATCCGGTAAGCTCTCCA 58 NA InUTR Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000083329 2 1 2 163 8 128792963 128794277 AGGCTCAGTTACATCCAGTG 60 128795219 128795238 CAAGAACACAGACAGCATCC 59 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 3 2 2 160 9 44478574 44483484 TCTGAAAGGCACCAAAGAG 58 44476128 44476146 TGAAACCAGTGGCATTCTC 58 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 2 2 2 80 8 132030094 132030744 CCAAAGCAGATGAAGAACCA 59 132030033 132030052 ACTTCTCATCTGAGGAACGT 59 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000066167 1 1 2 80 20 50440055 50440074 CAGTTGGTTTGCTAATTCCC 57 50440114 50444183 AGAGGGTACATCCTATAGACAG 58 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078 2 1 2 80 14 84632594 84632613 AACGGCACTACTGAGATAGC 60 84577682 84632553 CATTCTTTGAACTTGGCTGCT 60 NA Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 3 2 2 80 X 25486939 25486958 CGGATGATGAGTTCAGTGTG 59 25477398 25486899 TACAAAGACTAACGACATTGGC 59 NA Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 1 2 2 80 2 252288447 252288814 GCAGCTCTTACAGCAACAG 59 252288855 252288876 TCTTCAAGCAAGTAACAGTCTC 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000080174 2 2 5 80 20 4810667 4810685 GGTCATGATGTTCAGTGCT 58 4808324 4810625 AAGATCTCCATAGGATCTTGC 57 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080 1 1 2 81 1 213521105 213527176 TTTCTGCAGGGTATCCCAC 59 213527218 213527239 TGTCCTACTCTTTGGTAAAGCA 60 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000046377 3 1 2 80 1 99949744 99949765 TCATCAGTAGATCCTTATGCGG 60 99948834 99949706 CATGGTAATTATAGCAGTGGGC 59 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000085210 2 1 2 80 10 95311241 95311259 AGAAACCCATGATAGCAGC 58 95303596 95311198 GTCTTGTGAGAGTCTTCTGG 58 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000085210 3 1 2 80 10 95296874 95296893 TTTGGAATGTGCAGTTAAGC 57 95294791 95296833 GTCATCCTATGTAACCTGGTG 58 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000041119 1 1 2 80 10 78134207 78153767 CTGTTACAAGGTGGGAATCTC 59 78134147 78134167 AGCAAATGTTTCCTGGATGAC 59 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000039281 2 1 3 80 12 47193998 47203596 TCTCGAGAAAGGATAGATCGT 58 47204372 47204392 CTTTGTCCTTGTCAAATTCCC 58 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000091791 1 1 2 80 8 132135192 132135488 CAGCAGAACAGTGCTTGTC 60 132135532 132135550 TGGTACTCAATCGTGTGGT 59 NA Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 3 2 2 82 8 32209251 32211309 CAGATGAGGATGACAGATTGGA 60 32211352 32211370 TGGTCGTTCTGTACTGCTG 60 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000019180 1 1 2 80 9 46763230 46765333 TAAGGATTGACTTGACTGCG 58 46765373 46765394 AATAGTCTGTCACTTTGTGAGG 58 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000045130 1 1 3 80 7 66777569 66778158 ACAACCAGATCCAACTATTTGC 59 66778471 66778493 CTACTTCTAAAGACCTTTCAGCG 59 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171 2 1 2 105 9 1631897 1654475 GTTGAACAAAGGGCAAAGTC 58 1654543 1654561 TTTGGTAGCAGATGAAGGC 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000052403 2 1 2 81 2 210748645 210748663 TTGGAGAACCAGGTCATGG 59 210747664 210748600 ACTCTGGCTTTCCACTCAC 60 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 1 2 2 80 8 129206271 129206289 GCATCGTGGTACTTGTGAC 59 129206333 129218203 CGATTCCATACTTCAGCCC 58 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 2 2 2 80 2 30536865 30536884 CTATGAAACCGACTACACGA 57 30534397 30536824 GTGATAGGTGGATATTCCCTG 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000072848 1 3 8 98 20 4363815 4363833 TCGGAATTGTCGATGAGGG 60 4363894 4364086 CAGGAATCTGGTAGACTCGG 59 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 2 2 2 80 3 153235240 153238184 TGGGAGTAAGTTCCTTGGA 58 153235178 153235199 TCATTAGATCAATCCGAGACTG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 1 2 8 84 20 4387143 4387161 AGAACTTCCTTCGTGTGGG 60 4382464 4387097 CCAAAGAAGCTAGATTGCCAG 59 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574 3 1 2 87 2 227580642 227582834 CTCCTAGCTCAGCAGTTGG 60 227580573 227580591 TTTCAGCGATCTCCCTCTG 59 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000020323 3 1 2 80 3 161238804 161238822 CTAGGAGAACCCAACATCG 57 161238864 161239156 GTACTTCTTAAATGCTGTGGG 57 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326 3 1 2 66 8 93491780 93492835 TTTGTTTCTGTCCGAGGTC 58 93492865 93492883 TCCTCAACTCCTTTGTTGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884 1 1 2 80 5 159530830 159531085 CTCTACACCAACGGACTGAG 60 159531128 159531146 CACAAAGTTGAAGGCGACC 60 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000064905 2 1 2 108 20 47643277 47647679 TATTGAAATAAGCCTGGCACC 59 47647749 47647767 GTTATGCACTGCCATCTGC 60 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 1 2 2 80 5 79398798 79400909 AGAGTGTGATACAGCTCTGG 59 79400950 79400970 TCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365 2 1 2 98 20 47547284 47547306 CAAAGTATACAGAGGAAGGAGAG 58 47547364 47558621 GAACTTCAGCTCTACCTCG 57 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365 3 1 2 98 20 47547283 47547304 GCAAAGTATACAGAGGAAGGAG 58 47547363 47558620 AACTTCAGCTCTACCTCGG 59 NA Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 3 1 1 78 16 49186353 49186371 CAGTACCTCAGAGCTCTGC 60 49186808 49186826 AGTAGTTGGCAAACTCTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 1 2 3 80 3 80718514 80718533 CACCTCCTCTTCTTCCTCAG 59 80718575 80732039 CCATTGTCCTCAAAGTCCTC 58 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 2 2 2 92 3 162414187 162422792 CAATGAAATTGAGCGCGTG 59 162422848 162422866 CCATATCTGGATGCGAACG 59 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 3 2 2 80 5 152090519 152090537 GATCCCTCCGAAGAGATCG 59 152089769 152090478 GTCGTCATACACATCTTTCAGG 59 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 1 2 2 80 5 59071989 59072007 GCTACTCCTGCATCATCCA 59 59071746 59071946 GTTACTGTGGTATCTGCCGT 60 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000067435 1 2 3 80 5 100464570 100467812 ACATCCACTGAAGCCTACAC 60 100464509 100464527 GAAGGATGGGTCTCTTGGG 60 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 1 2 2 80 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731181 157731199 ATTTGTTGGTTTGCAGCCA 59 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000033653 1 1 2 80 3 424003 429522 TTATTCTGTGAGGTGAGTGTG 58 423943 423961 TTCTGGCACCTTCAAAGTG 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392 1 1 4 80 16 81623913 81624349 ACCATCCTACAGGTTTCCTC 59 81624392 81624410 ACTGTACCAGGGACTTTCC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740 2 1 4 80 16 81632237 81641334 TCAGCTACCATTGTTCCGA 59 81641377 81641396 TGATCCTCTTCTTCAGCGTC 60 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 1 2 2 81 3 175983484 176040690 CGTCATCCAGGTTAACACCT 60 176040734 176040752 TTTGTTGGCAATCACGGTG 60 NA Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823 1 1 2 80 3 170994208 170996203 TGTGCCCTCTAGTTCTGAG 58 170996247 170996265 GCTTCATTTCTTGCCAAGC 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 2 3 3 91 16 69882210 69882228 CCGGAGACTGGTATTACCG 59 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435 2 1 2 80 3 155344044 155344062 TCCTGAGGTGTATCGTGTC 59 155344100 155349073 CATTGTAGATAACCCTATATGCTCC 59 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 2 2 2 80 3 151335594 151344765 CAACCATGATGGCAATGAC 57 151344808 151344827 GGGTCATTAGAGTGTTCCAG 58 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962 2 1 3 80 3 51404684 51407815 AGCAAAGCTTGGAAAGATCTC 59 51404624 51404645 GAAATGGTTCTTGTCACTACCA 59 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 1 1 1 84 16 82439362 82439382 GCTATTAATAACTGCCCTCCC 58 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AY172581.1 ENSRNOG00000029070 ENSRNOT00000041978 1 1 1 62 MT 7693 7711 CATTGCGAAGCTTAGAGCG 60 7734 7755 CATTGTGGAGATTTGTTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058391 ENSRNOT00000087130 1 1 1 60 5 9975088 9975106 GCTGCATCATCTGTCACTC 59 9975128 9975148 GGTAGCCAGTCAGATTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060109 ENSRNOT00000081535 2 1 1 60 5 135784921 135784940 AATCCTCTTCCTCCCTACTG 58 135784880 135784900 GTCCTCCTTTATCCCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056690 ENSRNOT00000077097 3 1 1 60 2 26443546 26443564 GGCTTATCCACTGCATACC 58 26443504 26443522 AGTTTCCCTGCATCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038269.1 ENSRNOG00000050081 ENSRNOT00000074439 3 1 1 60 X 44158121 44158140 CAGTTGAGCCTTATGTGACC 59 44158161 44158181 AAGATGAGTTCTCGGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040624.1 ENSRNOG00000058183 ENSRNOT00000082858 2 1 1 60 X 106607333 106607351 GAAGTAACATCCTGCCGAC 58 106607291 106607310 CCTTGCACAAGATAAACCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060204 ENSRNOT00000082559 2 1 1 61 8 16713673 16713691 AGAGACTTTGACAGCCCAG 59 16713714 16713734 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056225 ENSRNOT00000087982 1 1 1 60 2 28449041 28449061 GTGCATCAGTACATGACAGAG 59 28449001 28449019 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056225 ENSRNOT00000087982 3 1 1 60 2 28449053 28449071 TGTGTCACATGTGCATCAG 59 28449011 28449031 AACACTGAGCATAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059502 ENSRNOT00000082265 1 1 1 60 5 113926564 113926582 CCTCCTTGGTAGTGTATGC 57 113926522 113926540 GTTTCCAAGGTCCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059004 ENSRNOT00000078950 1 1 1 91 2 240904134 240904153 AAGAGCAAGTGTGGTATCTG 58 240904062 240904080 CTACACAGGCAAAGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059354 ENSRNOT00000080674 3 1 1 60 2 170631760 170631780 AGGACCAGTCTTTAGTCAGAG 59 170631720 170631740 GTTTGGAGGTTGTAACAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052672 ENSRNOT00000085327 2 1 1 60 2 124304182 124304201 AACTACCCTGTGTACACCTC 59 124304141 124304164 CTACTCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059735 ENSRNOT00000080002 2 1 1 60 16 46127808 46127826 TCACGTGTACATCAGGAGG 59 46127849 46127868 CTGGAATACTGAGCTCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054899 ENSRNOT00000090522 3 1 1 60 11 35158239 35158257 ACTGTTCCATGAGTGTCCC 59 35158277 35158299 CTGGAAAGGTTATCCTCTTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052768 ENSRNOT00000084209 1 1 1 62 11 83854851 83854869 AACGAAGGTAGTTCTCCCG 59 83854807 83854825 CCCAGTAGTCAGCACATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056394 ENSRNOT00000082360 2 1 1 110 8 80501358 80501376 TCTTTCTCCCATTGGACGG 59 80501266 80501284 AATCTGGCTCTGTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052659 ENSRNOT00000077407 2 1 1 60 16 60112173 60112191 ACATCCTCAGTCTGAGCAC 59 60112131 60112149 AGCAACATCAACCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056680 ENSRNOT00000083348 2 1 1 60 11 47319487 47319507 ATGACCCAGAGGAGATTAGTG 59 47319528 47319547 ACACTTCATGAGTTCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048075.1 ENSRNOG00000046591 ENSRNOT00000072391 2 1 1 60 5 60516481 60516499 TCTGTGAGTTCAAGGCCAG 60 60516521 60516541 CTTATACTCCTGGCTGTCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058947 ENSRNOT00000078745 3 1 1 60 8 126637216 126637236 GACCTTCCCTAAGGAGAAGAG 59 126637256 126637276 GAGGACATAGCTGTTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056734 ENSRNOT00000082727 2 1 1 60 2 74322846 74322864 TAGGTGGCAGAGATGAGAG 58 74322888 74322906 TCGGATGTTCCTAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054664 ENSRNOT00000089768 3 1 1 61 8 95093832 95093850 TCCTGTGCATCAGTAGGTG 59 95093789 95093807 GACAGAGAACGATGAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060579 ENSRNOT00000077684 2 1 1 60 11 85813961 85813980 ATTCCTAGAGGCATTGAGGT 58 85814003 85814021 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052855 ENSRNOT00000082777 3 1 1 60 16 24160773 24160797 GTATCATATGTGATTCAGTAGGTGG 59 24160811 24160833 GAGCACTAAGCATAGACATATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059045 ENSRNOT00000078184 1 1 1 60 8 104069811 104069829 AGAGACTTTGACAGCCCAG 59 104069769 104069789 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051575 ENSRNOT00000088411 1 1 1 60 16 59413908 59413930 GAGAAACTATGGTCAAGAAGGTG 59 59413950 59413968 ATCTGGAGCACAATGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059823 ENSRNOT00000083243 1 1 1 60 2 110357366 110357388 GTCTTTGGTCAGAAGTATAGGAG 58 110357408 110357426 CAGGCTTGTTTGAAGGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055668 ENSRNOT00000087388 2 1 1 60 2 255121136 255121159 GACTTCCTCTTCTTTGAATGAAGG 60 255121099 255121119 GATGTTCACGGTTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060841 ENSRNOT00000085575 1 1 1 60 8 87344528 87344549 GTGTCACATATGTGTCAGTAGG 59 87344489 87344510 GAACACCAAGTGTAAACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060854 ENSRNOT00000087904 3 1 1 60 8 48693716 48693739 CATGTACTGTCAAAGATCCTTTCC 60 48693755 48693776 TGTTTGAACTGAGAAATGCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061823 ENSRNOT00000082503 3 1 1 60 16 18197786 18197805 AACAGGTCTTCAGTAAGGCA 59 18197825 18197846 CTTTGAAGGTTCTAGGAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057055 ENSRNOT00000081617 3 1 1 60 8 85571943 85571964 GAACGACACAGAGAAGATTAGC 59 85571904 85571924 GAAGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 2 2 2 88 X 22399683 22399827 TACGGAGACTAGAGGTCCG 60 22399613 22399632 GTATCGTCTGGAGAGGATGC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059131 ENSRNOT00000080823 3 1 1 74 16 55208588 55208609 TCGGTCAGCCACTATAATAAGG 60 55208644 55208662 ATTTGCGTGTCGATCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057773 ENSRNOT00000081143 1 1 1 97 16 12367497 12367515 TAGAGCAGGTACAGCATGG 59 12367576 12367594 TTACCCTACAGGTGGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061206 ENSRNOT00000082810 1 1 1 60 6 87210167 87210185 CTTCTAGAGGCTTTGCAGG 58 87210125 87210143 TCCTTTCTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061382 ENSRNOT00000089795 1 1 1 60 9 57996144 57996168 GATATAGAGATGATAAGCATAGCCC 59 57996185 57996204 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.2 ENSRNOG00000061395 ENSRNOT00000080105 2 1 1 66 1 156001033 156001051 CTCTTGGAGGGTCACTGAG 59 156000985 156001004 TCCACTAATATCAGACGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002353.2 ENSRNOG00000053141 ENSRNOT00000082460 3 1 1 60 1 71924167 71924186 CCATCTGTTTGCTATTGGCT 59 71924126 71924148 CCTCGTAGAAGAAAGAAGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128792.2 ENSRNOG00000057558 ENSRNOT00000091848 2 1 1 102 1 101449938 101449959 GCGGCTGGAAGATAAAGTG 59 101450025 101450043 CTCTTATCTGAGCAGCGCT 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054342 ENSRNOT00000091987 2 1 1 60 9 78980086 78980104 CTTGAGTCCAGGAGTTCTG 57 78980044 78980063 AAACTTAGTGTGAACACCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.3 ENSRNOG00000061318 ENSRNOT00000089296 2 1 1 60 1 84102808 84102826 GGCAACAGAACAACAGTGG 60 84102766 84102786 GCTTCTAACATGACGATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000007671 2 2 4 80 7 115865024 115865136 CTGTGCCTCTTGAACATCC 59 115864962 115864981 TACGATGACCAGTATGACCT 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059882 ENSRNOT00000090941 1 1 1 60 9 55114565 55114583 GAGAAGATTAGCATGGCCC 58 55114523 55114541 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067736.1 ENSRNOG00000041717 ENSRNOT00000063470 3 1 1 60 9 60070211 60070229 GATGTCACATGGTGACAGC 59 60070169 60070188 TAACATATGCCTGTTGGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052165 ENSRNOT00000079691 2 1 1 60 X 144402095 144402119 GATACAGAGAAGATAACATACCTCC 58 144402135 144402155 GGAATGTTTCATGGACTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058743 ENSRNOT00000085721 1 1 1 60 X 74088802 74088821 CCTTAATGGTTGTGTTGCTC 57 74088843 74088862 GGACAAAGGACTGCAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035541.3 ENSRNOG00000061371 ENSRNOT00000089349 3 1 1 60 12 19254386 19254407 ACAATAAAGGCCATGTTGAGTG 60 19254347 19254368 TGACCTCATTGGTTTCATTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000057513 ENSRNOT00000086739 3 1 1 60 6 66235356 66235374 CTTCAACTTTGCGTCTCCA 58 66235396 66235416 TCTCAGTCATCATCTACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053375 ENSRNOT00000079056 1 1 1 64 6 117241414 117241432 AATCTGGCTGTGACATCTG 58 117241368 117241386 TAGCCAGTCAGATCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053892 ENSRNOT00000086401 3 1 1 71 2 166764118 166764136 TCACATGTGCGTCAGTAGG 60 166764065 166764084 TTATTCAGATGCTCACAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.1 ENSRNOG00000046060 ENSRNOT00000071539 1 1 1 60 9 45896781 45896799 CTTTAATCCCTCCCACCCA 59 45896739 45896757 CCACATTCCACAGGTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053280 ENSRNOT00000085254 2 1 1 60 9 35908661 35908679 GGCAAATGGCAAAGAGGAG 60 35908699 35908721 CGGATGTTCATTAGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044954 ENSRNOT00000070221 1 1 1 60 X 21674881 21674900 AACCCACGTGATCTCATCTG 60 21674922 21674941 GCAGGTACTAACCAGAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056262 ENSRNOT00000087333 2 1 1 60 10 96048137 96048156 GAGGGAATCTAGGCTGTGAC 60 96048177 96048197 AAATCAGTCAAATCCACCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052396 ENSRNOT00000081731 1 1 1 60 16 61719658 61719676 CAAGCAGACGCCTAAAGAG 59 61719697 61719718 TCTATTGAAGTCCAGAAGAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.2 ENSRNOG00000059270 ENSRNOT00000084836 3 1 1 81 10 76363871 76363892 ACCTTAACCGTAAGCATTTCTG 59 76363932 76363955 CTGCTCAATTCTGTGAGAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056924 ENSRNOT00000082189 3 1 1 60 X 40434020 40434038 CATGTGCATCATCAGGTGG 59 40433978 40433997 ATAGGTCAGAACACTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057593 ENSRNOT00000090992 1 1 1 60 X 112166154 112166174 GGTCACATGTACATCAGTAGG 58 112166114 112166133 TCAGAACACTGAGGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055075 ENSRNOT00000090489 2 1 1 60 16 6181958 6181976 TATGCATATGGGAGGCAGG 59 6181999 6182018 GTTAACCTTTGGTCACAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054526 ENSRNOT00000083424 2 1 1 61 16 25145545 25145567 GGAACGATACAGAGAAGATTAGC 59 25145588 25145606 TCTTGGCATTATTTGCGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061766 ENSRNOT00000079181 3 1 1 61 16 61888929 61888947 GAGAAGATTAGCATGGCCC 58 61888971 61888990 TAATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026353.1 ENSRNOG00000051800 ENSRNOT00000085716 3 1 1 96 16 73680444 73680462 AGGTCTGTTACTGAGCTCC 58 73680366 73680384 CTTGTTTCCTGCTGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057004 ENSRNOT00000082260 1 1 1 60 7 88273425 88273444 AAGGGTAAAGGAAGTCTCCA 58 88273467 88273485 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057004 ENSRNOT00000082260 3 1 1 60 7 88273423 88273443 AGAAGGGTAAAGGAAGTCTCC 59 88273465 88273483 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009786.2 ENSRNOG00000041563 ENSRNOT00000063316 2 1 1 84 2 112270937 112270958 CACGAATACTTTCTGGTATGGA 58 112270874 112270892 TGCATTTCAGACAAACCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059286 ENSRNOT00000082240 2 1 1 60 X 23782381 23782399 TCGTACTGTAGCTGTTGGT 58 23782339 23782359 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052816 ENSRNOT00000089669 1 1 1 60 10 20013166 20013185 TGTCAGTAGATGGCAGAACG 60 20013207 20013226 ATGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040821 ENSRNOT00000062574 2 1 1 60 11 11978367 11978386 TGAATGCAACTGATCTCGTC 58 11978409 11978427 AAGTACTAACCAGGACCGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056780 ENSRNOT00000087395 1 1 1 60 2 115807768 115807788 TTTGGTTGGTACCATGATCAC 59 115807810 115807828 GAGTGCAATGGATAAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050324 ENSRNOT00000070869 1 1 1 60 3 19205486 19205506 AATTATGGCTGCATCTCTAGG 58 19205528 19205546 TAAACTTGAGCTGGCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051428 ENSRNOT00000088706 1 1 1 61 17 71306434 71306452 ACACCCAGTCCAAGAACTC 59 71306477 71306495 TTTGTTGTGCACACCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051428 ENSRNOT00000088706 3 1 1 84 17 71306468 71306489 GTAATTTAACAGTGGTGTGCAC 59 71306534 71306552 ACCTCCCAGTCTACTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053257 ENSRNOT00000077831 1 1 1 60 3 98122038 98122059 AGTTCATCAGTAAGCCATTTCC 59 98121999 98122017 CTTCAGACCTTTCCAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053257 ENSRNOT00000077831 2 1 1 60 3 98122036 98122056 TCATCAGTAAGCCATTTCCAG 58 98121996 98122014 CAGCTTCAGACCTTTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066739.1 ENSRNOG00000061824 ENSRNOT00000080626 1 1 1 93 9 13846904 13846922 CAGCCTTGGTGAAGAACTG 59 13846979 13846997 TACGACTTGTGCGTACTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000059339 ENSRNOT00000089038 3 1 1 69 8 13869834 13869852 AGTTCTTTCCTGTTGGGTG 58 13869885 13869903 CAAGAAACCAACGATGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044889 ENSRNOT00000070156 1 1 1 60 9 81051953 81051972 TCCTGAACATGACCACTCTC 59 81051995 81052013 TAGTAAGCAGGCTCGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053403 ENSRNOT00000088789 2 1 1 61 8 115912520 115912538 GTGTCAGTAGGTGGCAGAG 60 115912559 115912581 GTTCATAGGTCAGAATACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044036 ENSRNOT00000069303 1 1 1 60 4 101014255 101014277 CTTATCTGATCTCAGAAGCAAGG 59 101014217 101014241 CTTGTCTACCATCTAAGTACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056770 ENSRNOT00000083475 2 1 1 62 1 87931424 87931442 TACAGAGCTTGCCAGAACC 60 87931380 87931398 TTGCCTTGGATGAAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035203.1 ENSRNOG00000060198 ENSRNOT00000078541 2 1 1 60 12 6784069 6784089 CCTGTCCATTCTCAGAAAGAC 59 6780838 6784048 GGAATCACGGAAAGAGACTG 58 Novel DesignRelaxed Rattus norvegicus 81 ACEA_U3 ENSRNOG00000057333 ENSRNOT00000079504 2 1 1 60 10 74765418 74765441 CGTTACTAGAGAAGTTTCTCTGAC 59 74765460 74765478 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058961 ENSRNOT00000088419 2 1 1 60 17 60656468 60656487 TCACATGAACTGTGCATCAG 59 60656427 60656447 GAACACCGAACATAAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060078 ENSRNOT00000089276 1 1 1 60 6 119080999 119081021 GGAACGATACAGAGAAGATTAGC 59 119081041 119081059 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060078 ENSRNOT00000089276 2 1 1 60 6 119081005 119081026 ATACAGAGAAGATTAGCATGGC 58 119081046 119081065 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141334.4 ENSRNOG00000058960 ENSRNOT00000086239 2 1 1 69 10 36691084 36691102 CATGAAAGCTGGTTCCCAG 59 36691433 36691451 GTTGAGGGTACACAGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029272.1 ENSRNOG00000047694 ENSRNOT00000074504 1 1 1 60 10 19583215 19583233 CTATGTAGACCAGGCTGGC 60 19583173 19583191 GTAGTCTGGAAGCAGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057885 ENSRNOT00000087387 3 1 1 63 10 86377933 86377951 GAGAAGATTAGCATGGCCC 58 86377888 86377908 CCAAATATGGAACACTTCTCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA58 ENSRNOG00000059872 ENSRNOT00000088711 1 1 1 60 6 111468841 111468859 CGTAGACCTTGCTTGACTC 58 111468799 111468819 ATTACTCTTGCATACGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033943.1 ENSRNOG00000001675 ENSRNOT00000002277 2 1 1 64 11 45647554 45647572 GAAGGACTCTCACCTCCAC 59 45647601 45647619 ATGAAGTGCATGAGTCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035064.1 ENSRNOG00000051390 ENSRNOT00000074496 3 1 1 95 12 3783724 3783744 AACCTAAAGAAAGAGATGCCC 58 3783798 3783823 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044660 ENSRNOT00000069927 2 1 1 60 6 116965711 116965729 CTCAGAAGCTAAGCAGGGT 59 116965669 116965687 ATCCCTGCCTGGAATTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059034 ENSRNOT00000077403 1 1 1 60 15 12840041 12840061 AGAGGCTATGTCAACACTCAG 60 12840081 12840101 GTTAGGCTACGGATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051665.1 ENSRNOG00000053446 ENSRNOT00000088394 2 1 1 60 3 18970767 18970787 GGTCTGGGACCTCTTATTCTC 59 18970809 18970827 TAAGTGGCAGCATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041725 ENSRNOT00000063478 2 1 1 61 10 36306373 36306391 GGAAGGTAAGCAGGGTCAG 60 36306416 36306434 AAGCCTTTCTTACCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041725 ENSRNOT00000063478 3 1 1 62 10 36306374 36306392 GAAGGTAAGCAGGGTCAGG 60 36306417 36306436 AGAAGCCTTTCTTACCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051565 ENSRNOT00000081252 3 1 1 60 4 75730747 75730766 TTAGATGTGGTAAGGTGAGC 57 75730787 75730807 TTTCAGAAGGGATGCATATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.1 ENSRNOG00000036549 ENSRNOT00000054654 2 1 1 60 9 27678683 27678701 CACAACCAGCATAGTCAGG 58 27678724 27678743 AGGCGCTCAAAGAGATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032045.1 ENSRNOG00000061132 ENSRNOT00000083407 3 1 1 81 18 44058009 44058029 CAGGCACTAAGAGAAACTGTG 59 44032792 44057971 GATCTATGACCTGAAATTCCAACC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041892 ENSRNOT00000063645 2 1 1 60 4 120565978 120565997 ATCTGATCCTGTCTGATCCC 58 120565937 120565955 TCAGGCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061378 ENSRNOT00000090199 1 1 1 60 2 187976715 187976736 ATACAGAGAAGATTAGCATGGC 58 187976756 187976775 GGAACACTTCACCAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011857.1 ENSRNOG00000045839 ENSRNOT00000074961 3 1 1 80 2 172896032 172896055 AGATTTCACCTCACATGCGA 60 172896096 172896116 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000057480 ENSRNOT00000088934 1 1 1 60 1 111037575 111037597 GGAAGATAGCATGATCACAAAGG 60 111037537 111037558 TCTGAAGTACAATGACCATGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118115.1 ENSRNOG00000033655 ENSRNOT00000040903 2 1 1 60 8 22063389 22063407 CCTGGGTCCTAAGTCTGTG 59 22063430 22063449 GAGTTCTTTAGCCTTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069490.1 ENSRNOG00000039627 ENSRNOT00000060753 1 1 1 60 8 24083727 24083748 GCACTCTTTCGATTAAGAGTCC 59 24083764 24083787 CTACTTGTATTCCACGTTCATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041731.1 ENSRNOG00000059257 ENSRNOT00000077890 3 1 1 60 X 137997877 137997895 GGCAAGGTCCTACTTCTCG 60 137997917 137997937 AAACCACACGAGGATATAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.1 ENSRNOG00000030827 ENSRNOT00000047083 2 1 1 101 3 75794082 75794101 AGACCAAGTTCTGCCTACTC 59 75794159 75794185 CACATCCTTATTGTAAATCAGAGGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053697 ENSRNOT00000078649 2 1 1 60 17 48432323 48432345 GGAACGATACAGAGAAGATTAGC 59 48432365 48432383 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.2 ENSRNOG00000048974 ENSRNOT00000071198 3 1 1 61 2 231874975 231874995 CTCCCTTCCACTTTAACATGG 59 231875018 231875036 AACATGGCAGCACTTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060261 ENSRNOT00000080040 2 1 1 60 4 176170367 176170386 CAGAGGAGGACAGTCTTAGG 59 176170326 176170346 AGTGTTTGCACACTCTAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000057863 ENSRNOT00000091917 2 1 1 65 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951564 186951584 ATTCAGATGTTCACAGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.4 ENSRNOG00000053995 ENSRNOT00000087233 2 1 1 62 17 44696377 44696395 GAGAAAGCATGCTCCAGTG 59 44696415 44696439 GCACATATACTGCTGTATAAGTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.4 ENSRNOG00000053995 ENSRNOT00000087233 3 1 1 69 17 44696377 44696395 GAGAAAGCATGCTCCAGTG 59 44696428 44696446 ATCACCCGCACATATACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058079 ENSRNOT00000087691 3 1 1 65 2 189938516 189938535 ATGATACAGAGGAGACCAGC 59 189938560 189938581 GGTGACCATTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122603.2 ENSRNOG00000059288 ENSRNOT00000078628 1 1 1 126 16 20052151 20052169 TTTGGCTTTGAAGGCACAG 59 20052042 20052060 TGTCTCAGGTGTCTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100361864 ENSRNOG00000042588 ENSRNOT00000078890 3 1 1 85 14 22654382 22654400 TTTGAGGGCAAGAAACCAG 58 22654449 22655714 TTTGGATGACCAAGAAGGC 58 Novel Rattus norvegicus 81 SNORA41 ENSRNOG00000058518 ENSRNOT00000089467 1 1 1 60 1 16389860 16389879 TAACAGTTGTAGCGTTCCTC 58 16389899 16389920 GGCATTAAATGGTGTAATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035289.1 ENSRNOG00000045540 ENSRNOT00000074232 1 1 1 60 12 9730699 9730718 CCTTGAACTCAGAGATGCAC 59 9730741 9730759 GCATAGGCCTTTAATCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000080281 1 1 2 80 1 48323238 48323258 CATCAGCAACAACAGTAACTG 58 48323634 48323655 CTGTTGTCACTGTTGTTGC 58 Novel Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051,ENSRNOT00000090573 1 2 2 80 15 36878957 36879184 TCATTGTACACAGGCATCC 58 36879226 36879246 TTCTGAAGCTCTGTAGTTGAC 58 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000070995 2 1 3 80 6 104526270 104526289 TGCAGATTCAGAGAACAGTG 58 104526329 104528751 TTCAACAGTGGGATATCATCTG 58 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 1 1 3 162 6 104437375 104467487 GTCCCAGAAGATCGGTGTC 60 104467613 104475043 TAGCTTCACCAGTGGAAGG 59 Novel Rattus norvegicus 81 AABR07004539.1 ENSRNOG00000056733 ENSRNOT00000086862 1 1 1 80 1 147270596 147270617 AGAGACAACTAGTACAACCCTG 59 147262624 147270555 TCTTCCTGGACTTTGGCTG 60 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 1 2 2 80 9 4272647 4272669 AGGATATTAAGGACCCATCTTCC 59 4272706 4276196 AGCCACATAAAGGAACTTACAG 59 Novel Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076385,ENSRNOT00000076888 2 2 2 144 13 77785098 77785116 AAGTCACTTCAGACAGCAC 58 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056155 ENSRNOT00000081932 3 1 1 60 2 68252028 68252047 TAGAACCTCCAAACAAGCTC 58 68252067 68252088 ACTCTCAAATCTAGAGCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043,ENSRNOT00000092119 2 2 2 80 10 4491718 4491823 CTATCAGAGGAAGAAAGTTCCAG 58 4491859 4491881 CCTGTGATAGTTCGGTTAATCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041913 ENSRNOT00000063666 1 1 1 64 14 75478544 75478562 ATACCACCCTTAACACGCC 60 75478590 75478608 CTAACCAGGGACAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059646 ENSRNOT00000090354 1 1 1 60 14 20034954 20034972 CATGTGCATCAAGGAGGTG 59 20034912 20034933 GGTCAGAACACTGAATGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008025.1 ENSRNOG00000032097 ENSRNOT00000050574 3 1 1 60 2 39507495 39507513 CAAGTCCAAGAACCACACC 59 39507535 39507555 CTTGATGTCATTTCTGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052040 ENSRNOT00000088823 1 1 1 60 2 240772924 240772942 GAGAAGATTAGCATGGCCC 58 240772882 240772900 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.2 ENSRNOG00000055573 ENSRNOT00000082729 2 1 1 82 7 142890325 142890807 GTGCGACTAAAGGAAGGGA 59 142890261 142890279 TTGACCTGAGCATTCTGGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054372 ENSRNOT00000080081 3 1 1 60 14 100762521 100762541 GCAAGATCATAAGAAGCTGGG 59 100762558 100762581 GACTTACTAGCTGTTCATACTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007023.1 ENSRNOG00000056577 ENSRNOT00000086008 2 1 1 250 1 277459511 277459529 ACAATTCCTCCAGTCCCAC 59 277459743 277459761 GTGAGTGAGTGTGAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044699 ENSRNOT00000069966 1 1 1 60 17 25470960 25470980 ACTCTGAACTTGCCTACTCTC 59 25470920 25470938 ACTAACCTGGTCCAGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060377 ENSRNOT00000086528 3 1 1 60 17 26541297 26541316 TGTCTCCTTTCTCCTTTCCT 58 26541335 26541357 GTCTCCTTTAACCAAGTGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053175 ENSRNOT00000083252 2 1 1 60 17 47502214 47502236 GGAACGATACAGAGAAGATTAGC 59 47502256 47502274 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501698 ENSRNOG00000051762 ENSRNOT00000078135 1 1 1 81 10 44506924 44506944 TGATCTATTCAATTGCCACCC 59 44507468 44507973 CGTAGAAGAGCTTGGTTAACTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056439 ENSRNOT00000079129 2 1 1 60 1 53939997 53940016 ACAGTGCAGAGATTAGCCTG 60 53939956 53939975 GGAACACTCCAGGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044596.1 ENSRNOG00000057037 ENSRNOT00000083453 2 1 1 112 20 12365519 12365541 CTGAGATCTCACCATGCCA 59 12365425 12365445 TTGGTGACATCCTCTAGTCTC 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000052324 ENSRNOT00000083772 3 1 1 76 14 75229479 75229501 GTCCAAAGGTAGTGAGTTATCTC 58 75229537 75229555 GGTATTGGATCGGGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054088 ENSRNOT00000088488 2 1 1 60 2 14966579 14966600 GCTCCATATTTGAACAGATCGG 60 14966540 14966559 TGTTCAGTGATACATCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054299 ENSRNOT00000087047 2 1 1 60 2 182944427 182944447 TCTTCAGTCAAGGATACATGG 57 182944469 182944487 CTGAGAGGTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034393.1 ENSRNOG00000052264 ENSRNOT00000089347 1 1 1 80 11 68060821 68060843 AGATTTCACCTCACATGCG 58 68060759 68060778 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U5 ENSRNOG00000052749 ENSRNOT00000090106 3 1 1 61 2 251829094 251829115 CAGATCGTATAAATCTTTCGCC 58 251829054 251829074 GACTCAGAATTGTTCCTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.4 ENSRNOG00000053845 ENSRNOT00000083765 2 1 1 60 17 44748615 44748633 TGCTTAAGCAAGTGCATCC 59 44748656 44748675 GAGTTCATTATGCCCATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039778.1 ENSRNOG00000048235 ENSRNOT00000075468 1 1 1 80 X 84694288 84694310 AGATTTCACCTCACATGCG 58 84694353 84694372 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 Foxred1 ENSRNOG00000060379 ENSRNOT00000091308 2 1 1 80 8 36408153 36408436 CGGAACATAAATGAGTACCTAGC 59 36408095 36408113 TAGCAAGAGACAGCCTGAG 59 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 2 1 1 108 2 221659319 221659337 TAAGGTGTTCCTTGGAGCC 59 221659410 221659432 CAAACTGCACAGCCAAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000055205 ENSRNOT00000089796 2 1 1 60 14 14319575 14319594 GCACTTGCTCTGTCTATACC 58 14319534 14319552 TGCATTGTTCTTGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.2 ENSRNOG00000059027 ENSRNOT00000082961 2 1 1 83 1 167673270 167673288 TCCACATCAAACCAGACAC 58 167673335 167673355 TCAGGAAATTTCCAGTGCC 58 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 1 2 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164332 75167554 CCAGAATAAGAGCCTTCATCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000053505 ENSRNOT00000079244 2 1 1 60 1 15778205 15778227 GGAACGATACAGAGAAGATTAGC 59 15778247 15778265 CTTCACGAATTTGCCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115341.1 ENSRNOG00000022490 ENSRNOT00000033253 3 1 1 60 3 9096349 9096368 TCATGAGTCACATGAGACAG 57 9096308 9096327 CTTGTTGGAGTATGTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060632.1 ENSRNOG00000056865 ENSRNOT00000008357 1 1 1 91 4 87404352 87404370 ATAGCATCAGCCACCTGAG 59 87404427 87404445 ATCCACCCAGTACATGACC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054369 ENSRNOT00000081139 1 1 1 64 2 139869816 139869834 GCATCATTAGGTGGCAGAG 58 139869770 139869789 TTACCAGATGTTCACAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070270.1 ENSRNOG00000055900 ENSRNOT00000081624 3 1 1 65 8 62563533 62563551 TGTCATGAGACAGGTGGAG 59 62563485 62563506 CACATCTCATTTGTTGCTAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059985 ENSRNOT00000082162 2 1 1 60 17 82465990 82466011 GTCACATGTGCATTATTAGGTG 58 82465951 82465974 CATAACACAGAGCATAGACATAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061336.3 ENSRNOG00000059023 ENSRNOT00000083216 1 1 1 60 4 116935985 116936003 CAGTTTCTGGGCTGAAGTC 59 116935943 116935964 ACTGCAGAAGTTGAATTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000055783 ENSRNOT00000087315 3 1 1 62 2 205314531 205314549 GATTGGTATGCGCCTTTGG 60 205314572 205314593 TGTAGAATCTCCTGATGCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052320 ENSRNOT00000085514 2 1 1 60 17 53056912 53056931 ACCAAGGTCAAATAGGTGGT 59 53056951 53056972 GGAGCCAATACATTCATAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0815.11 ENSRNOG00000047520 ENSRNOT00000076466 2 1 1 84 5 77917713 77918080 GCTCTACAGTAGAACAAAGGA 57 77917649 77917667 GTCCCTAGTGATTCCATGC 58 Novel Rattus norvegicus 81 Rn60_20_0046.5 ENSRNOG00000059825 ENSRNOT00000086128 1 1 1 60 20 2489072 2489092 TCACATGATTAGAGTCAGACC 57 2489032 2489051 GCTGATTCGGTGGATAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110306.1 ENSRNOG00000053603 ENSRNOT00000084656 1 1 1 84 7 139784344 139784363 GATTCAGTGCAGCAAGAGC 60 139782689 139782707 TGAACTCAGTCACTGTGCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056048 ENSRNOT00000086645 1 1 1 60 14 107917854 107917872 GTGTCACATGAGAGGAGAG 57 107917812 107917830 CCAGGTGTTCTTAGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053966 ENSRNOT00000083455 2 1 1 60 1 118905008 118905028 CCTCCAGGATGTATACTAGGT 58 118905049 118905068 TCTATGGCACCTATTGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050417.1 ENSRNOG00000054488 ENSRNOT00000087044 1 1 1 80 5 164319546 164348026 CACTCTACAGGGTTTCTTAACC 59 164319487 164319508 TGAGCATAATTGAGACTTTCCC 59 Novel Rattus norvegicus 81 AABR07005838.2 ENSRNOG00000054087 ENSRNOT00000089033 1 1 1 60 1 202829580 202829598 TCCAAGGCTGTCTGTTCTC 59 202829622 202829640 GCTGTTGGTAACAGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055060 ENSRNOT00000082784 2 1 1 60 1 116719953 116719974 CAACAGAAAGACAAGAACAGGA 59 116719914 116719935 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000056252 ENSRNOT00000085524 2 1 1 60 1 200427704 200427725 GTGGTGTTCTTATATCAGTCGG 59 200427665 200427686 CAAGTTAGGATGACCAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059822 ENSRNOT00000077295 1 1 1 60 2 74938944 74938962 CCAAGGTCAGTCTCATCCA 59 74938902 74938922 AATATCGAGGAAACTTCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041968 ENSRNOT00000063721 3 1 1 79 4 50674117 50674135 TGATCTTGGTGGCTAAGCA 59 50674056 50674074 CTTGTTCTCATGGCTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056570 ENSRNOT00000084278 1 1 1 60 1 98727404 98727422 GAGAAGATTAGCATGGCCC 58 98727362 98727380 AATGTGGATCGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000053589 ENSRNOT00000077827 2 1 1 60 10 66596098 66596116 GTCCCACTTGAGAGTAGGC 60 66596140 66596158 TGTCTCAGTTGAGACTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000054422 ENSRNOT00000084612 1 1 1 62 5 76736003 76736021 CCAAGAACTGCCACTACTG 58 76735959 76735977 GACAAAGCACTTTGCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142187.1 ENSRNOG00000036473 ENSRNOT00000054581 2 1 1 62 5 142721663 142721682 GGCTACCATACATTGAAGGG 58 142721707 142721725 GAGACTACTGTCGGTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061339 ENSRNOT00000087864 3 1 1 61 1 280816856 280816879 CGATACAGAGAAGATTAGTATGGC 59 280816818 280816837 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061926 ENSRNOT00000091332 2 1 1 61 2 53669246 53669265 AGCTGATCTGACTGACTAGG 58 53669289 53669307 CAGGACACATGAAGCATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015941.1 ENSRNOG00000058474 ENSRNOT00000079300 3 1 1 61 14 86952203 86952221 GTCTGGGAAGCTGAAAGTC 58 86952160 86952179 ATTCTTTATGTTTGGCCAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.15 ENSRNOG00000050556 ENSRNOT00000072543 1 1 1 60 1 121197415 121197436 GCTACTGGTTATATTCCAGGAC 58 121197376 121197395 CCATTGAGTTGGGATTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 3 2 2 80 4 29561562 29561580 TCTAGAAAGAACCCTGCCC 59 29561621 29562211 GTCAATCCAGTAGTAATCGCTC 59 Novel Rattus norvegicus 81 AABR07001037.1 ENSRNOG00000047117 ENSRNOT00000073945 3 1 1 81 1 35152080 35152103 GAGATTTCACCTCACATGCG 59 35152018 35152036 TTCCTCCTTCTCCACATCC 58 Novel Rattus norvegicus 81 Rn60_9_0428.1 ENSRNOG00000046298 ENSRNOT00000022314 2 1 1 80 9 43145811 43159218 GAGCTAGACCACAAGGTCTG 60 43145750 43145770 AGTAATGTCCTGGCTACTGAC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059038 ENSRNOT00000089668 2 1 1 60 14 50805339 50805357 CAGGTCTTCAGTCAAGGGT 59 50805297 50805318 GCTTGTGTTGAGATTCTATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.1 ENSRNOG00000053144 ENSRNOT00000086887 3 1 1 60 3 61635769 61635790 CACTATCAGAGGATGCTCTAGG 59 61635730 61635750 TGTATCTTGTAAGCAGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014983.1 ENSRNOG00000041525 ENSRNOT00000063278 2 1 1 77 14 42763726 42763750 GGAGTACCTAATAAATGTGACTTCC 59 42763784 42763803 TGTCCCAAATATCACATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141172.1 ENSRNOG00000061735 ENSRNOT00000083818 2 1 1 80 17 70656041 70656061 AGTTTGATTCTGTTGGCTGC 60 70655979 70655997 GGTTTGCATTGTGGTCCAG 60 Novel Rattus norvegicus 81 AC242055.2 ENSRNOG00000058897 ENSRNOT00000079141 2 1 1 70 Y 1252659 1252679 CCTGAAAGCTTCTAGCTTCTG 59 1252710 1252729 AGCAATAACTCTCAGAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106947.1 ENSRNOG00000042648 ENSRNOT00000068335 1 1 1 102 1 168184104 168184123 CTTCCTACCATGCTTAAGGT 57 168184017 168184036 CAGATGACTCCATAGCTGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07041451.1 ENSRNOG00000051727 ENSRNOT00000085657 1 1 1 76 X 130618107 130618125 TCTTTCTCCACATCCTCGC 60 130618167 130618185 ATTTCACCTCACACCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000040652 ENSRNOT00000062405 1 1 1 60 12 39942387 39942407 GTCAATCTTGTCTGATCTGGG 59 39942347 39942366 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057697 ENSRNOT00000080861 3 1 1 64 1 214170108 214170129 GCAGCACATACACTAAATTTGG 59 214170065 214170083 CAAATCCTTGTGCAAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565989 ENSRNOG00000013940 ENSRNOT00000047544 3 1 1 80 2 127916273 127916292 TAGAGTATCACGTTGGGTGG 59 127916332 127941965 GTGAAACATTTGAACTGCTGAC 59 Novel Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 2 1 1 61 6 93357155 93357180 CATATCTAGATACATGGGACTGTG 58 93357199 93357218 CAAATGAAGAGTCACGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA18 ENSRNOG00000058492 ENSRNOT00000081545 1 1 1 60 14 82341613 82341633 GCCTCGTATAGTAACTTGTGG 58 82341573 82341591 CTTCCCACAGACCTAACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000054254 ENSRNOT00000079669 2 1 1 67 14 81589174 81589194 GGGCTAAGGTGTCTATTACAG 58 81589223 81589241 GCCACAATCAGACAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036374.2 ENSRNOG00000057023 ENSRNOT00000084392 2 1 1 60 12 40529586 40529605 GACATTGTCATCGCTTCTCG 60 40529625 40529646 TGACGATGTCATCTTACTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053636 ENSRNOT00000083206 3 1 1 60 14 115409144 115409164 GATGACCTTCCCTGAGTAGAG 59 115409186 115409204 GCGCAGCTACTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035103 ENSRNOT00000053226 2 1 1 60 12 42025732 42025750 CGATCTTGTCTGATCTCGG 58 42025690 42025710 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056382 ENSRNOT00000090631 3 1 1 76 14 86802606 86802624 ATTCCTACAGTGCTTGCCA 59 86802548 86802569 TCTATAACCTTGCTCTGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051913 ENSRNOT00000090471 1 1 1 60 6 79926892 79926912 CCAAGGATGAAGGAACTACTG 58 79926852 79926871 ATGTAGATGGGACAACTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053821 ENSRNOT00000085240 1 1 1 60 14 76840918 76840936 AGGACAAAGTCCAGAACCG 60 76840960 76840978 CATCCTTGTACAAAGGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052624 ENSRNOT00000080080 1 1 1 60 14 24117464 24117482 GAGAAGATTAGCATGGCCC 58 24117506 24117524 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063288.1 ENSRNOG00000055030 ENSRNOT00000084708 1 1 1 60 6 27129392 27129413 TTGAGTAGAAGACACCACATCC 60 27129353 27129371 GAGACCACCTAAACCAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053012 ENSRNOT00000088510 1 1 1 60 1 234086507 234086527 CTCCCACTAGAAGCAATACAG 58 234086467 234086486 TCTGCTACCTACTGACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060039 ENSRNOT00000082222 3 1 1 60 14 84619514 84619534 ACTAGGAGTTGGAATAGGAGC 59 84619474 84619492 TACTGCAATACCAGGTCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032821.1 ENSRNOG00000013622 ENSRNOT00000018214 1 1 1 101 18 84444047 84444065 AGACACTTGAAGACTCGCA 59 84443895 84443982 GATTGCAAGCTCAGCTGTG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000052576 ENSRNOT00000078989 2 1 1 60 2 151446242 151446262 ATAAGCTGGTATTTCCTCCAC 58 151446284 151446302 TTAAGCAGCTTCAAGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061689 ENSRNOT00000080007 2 1 1 68 3 98560468 98560487 TGTGTCACTAGATGGCAGAG 59 98560518 98560536 TCAAATGCTCACAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055108 ENSRNOT00000086981 1 1 1 60 1 109182495 109182513 GAGAAGATTAGCATGGCCC 58 109182453 109182471 AGTATGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000053701 ENSRNOT00000084579 1 1 1 60 12 39663333 39663351 GTGATTCCCTCTCCAAAGG 58 39663291 39663309 TCTTCCAAGTTGCTACGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627,ENSRNOT00000091377 1 2 2 94 1 254531928 254531946 TCCAGAAATGAACCCACAC 58 254532004 254532024 AGCACCATTTGCTAAAGCT 58 Novel Rattus norvegicus 81 AC131475.1 ENSRNOG00000049632 ENSRNOT00000074541 3 1 1 60 1 221360468 221360487 GCCTTGAACTCAGAGATCCA 60 221360427 221360446 GTGCATGCCTTTAATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.6 ENSRNOG00000061036 ENSRNOT00000089506 2 1 1 80 15 31447027 31447216 GATTTGCTGGGTGAGAGGA 59 31447257 31447278 CTCAGAGAAGAATTGGTTCCCT 60 Novel Rattus norvegicus 81 Wnt2 ENSRNOG00000051905 ENSRNOT00000083039 3 1 1 80 4 45309866 45325001 GAAGGAAGGCTGTAAAGCG 59 45309804 45309823 AGCATGTCCTCAGAGTACAG 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000055445 ENSRNOT00000081564 3 1 1 61 12 44894771 44894790 CAAACCAGTCAGTGGAAGAG 59 44894814 44894832 AGATCCCATGGCTATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044940 ENSRNOT00000070207 3 1 1 61 1 79664470 79664489 GGCCATACAACCATGAAAGG 59 79664428 79664449 AAACCAATCATGCTTAGCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059197 ENSRNOT00000083037 1 1 1 60 2 180900901 180900919 GAGAAGATTAGCATGGCCC 58 180900943 180900961 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.1 ENSRNOG00000050664 ENSRNOT00000071183 1 1 1 60 3 153533142 153533161 GCCTTGAACTCAGAGATCCA 60 153533183 153533202 GCTCACACCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047522.1 ENSRNOG00000056724 ENSRNOT00000091648 3 1 1 60 5 36237294 36237313 TGGCTCATCAGTAAGAGCAC 60 36237253 36237274 GTTGCTGGAAATTTAACTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 1 1 1 60 20 33493093 33520848 GATCAACCACAAGCTTGAGG 59 33493052 33493071 CTGAGTCTCAGTCAGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059398 ENSRNOT00000084316 3 1 1 60 10 4629567 4629585 TATGAGTAGCTGCACTCCC 59 4629525 4629545 TTTGGCCAATCACTTCTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002711.1 ENSRNOG00000041518 ENSRNOT00000063271 2 1 1 62 1 82585809 82585829 GATGTGTATGTATGCATGTGC 58 82585767 82585785 GTAAGGGCACATGCATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060276 ENSRNOT00000081894 1 1 1 60 2 189311924 189311942 ATTGCACTCTGGATGTGCT 60 189311882 189311900 TGTACAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058363 ENSRNOT00000079604 3 1 1 60 1 16995789 16995810 GTGGGAAGGTGAGATTCTAGAG 60 16995829 16995849 GCCTCTCCTACACAGTATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059590 ENSRNOT00000081502 3 1 1 60 1 73770446 73770465 AGGCTTATCTACCACATCCA 58 73770405 73770425 GAATTTGGGCAAATTGTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128394.1 ENSRNOG00000055972 ENSRNOT00000082011 2 1 1 88 1 12906978 12906997 CGGTCGAGATCAAGAAAGGA 60 12907049 12907072 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053193 ENSRNOT00000089670 1 1 1 60 1 246946958 246946977 ACAGAGAAGATTAGCATGGC 58 246946917 246946938 TATGGAAGCTTCACGAATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053193 ENSRNOT00000089670 2 1 1 60 1 246946958 246946979 ATACAGAGAAGATTAGCATGGC 58 246946919 246946938 TGGAAGCTTCACGAATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054084 ENSRNOT00000085455 1 1 1 60 6 64927237 64927259 GGAACGATACAGAGAAGATTAGC 59 64927199 64927217 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057695 ENSRNOT00000082465 1 1 1 60 2 153680875 153680896 GAAAGACATTCTTCAGTCAAGG 57 153680836 153680855 TGTTTAGAGGGTTAAGCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000058594 ENSRNOT00000080262 3 1 1 68 6 116905062 116905084 GAGTAGGAATGTATCCAGAACAC 59 116905016 116905034 TCTACTAGAAGGCTGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNase_MRP ENSRNOG00000057527 ENSRNOT00000090903 1 1 1 61 5 58994930 58994948 CTCTGAAGGCCTGTTTCCT 59 58994887 58994906 CCTAGGCGAAAGGATAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054271 ENSRNOT00000084997 2 1 1 61 2 198503330 198503348 GAGAAGATTAGCATGGCCC 58 198503373 198503391 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068007.2 ENSRNOG00000054475 ENSRNOT00000089203 3 1 1 81 9 76934324 76939463 TCAGGCCGAATGGTATGAG 59 76939508 76939526 CTGGCTGTAGACATCTGGA 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054982 ENSRNOT00000079315 3 1 1 60 3 136404104 136404126 TCTCTTGTTGTTACCCTAGAGAC 59 136404143 136404164 TTTAGGAACCGAGTAGATTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001807.1 ENSRNOG00000056478 ENSRNOT00000090895 3 1 1 83 1 58344905 58345125 TCGGGACCACAGAAATAGC 60 58344840 58344858 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 U6atac ENSRNOG00000054887 ENSRNOT00000079831 2 1 1 60 2 211289750 211289768 AAGGAGGGAAGGTTAGCAC 59 211289792 211289810 TGTTGTTAGGCTCAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057698 ENSRNOT00000080280 1 1 1 60 5 152601546 152601564 CATTCCTGGGTCAGGAGTC 60 152601588 152601606 CAAGTTCTCCGGAAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141526.2 ENSRNOG00000060188 ENSRNOT00000087927 3 1 1 61 1 89007630 89007649 GTCAGAGGCACAGAATTAGG 58 89007673 89007691 TCAGGAGGACACAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029742.1 ENSRNOG00000003214 ENSRNOT00000004285 1 1 1 80 10 48988105 48988124 AAATGAAGTATGAGCCGCTG 59 48988167 48988186 GAACTACGCCCATACAGGT 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000060176 ENSRNOT00000086304 3 1 1 60 5 78482977 78482995 ATGAGGTTTATCCGAGGCA 59 78483017 78483037 TAGGTGACCTACACCTCTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044063.1 ENSRNOG00000053910 ENSRNOT00000078002 1 1 1 82 19 54494637 54496054 ATACATAGGAAACCCTTCACTG 58 54496822 54496840 TGAAACAGTGTTGTGACCT 57 Novel Rattus norvegicus 81 AABR07064697.1 ENSRNOG00000060044 ENSRNOT00000090975 1 1 1 60 6 90955226 90955247 AGGTCTGTGATGTGTATTTCCA 60 90955187 90955205 GACATGGGTCTCAGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057423 ENSRNOT00000078539 3 1 1 60 1 147397272 147397294 GATACAGAGAAGATTGGCATGAC 59 147397313 147397332 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065352.1 ENSRNOG00000059223 ENSRNOT00000084880 1 1 1 81 6 123286607 123286625 ATTCACCACGTTGTTTCCG 59 123286542 123286562 ATCCCATTCCAGAGCAGTC 59 Novel Rattus norvegicus 81 AABR07060957.1 ENSRNOG00000054012 ENSRNOT00000082501 3 1 1 93 4 101687368 101687766 GATTCAGGGAACCAGTGGT 59 101687822 101687841 TGACTTGCAAGAGATGGAGG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035046 ENSRNOT00000053169 2 1 1 60 1 226610483 226610502 CACCGATCTCATCTGATCCT 59 226610442 226610461 CCCATCCATGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000057438 ENSRNOT00000077626 1 1 1 60 14 43587200 43587218 TCCTAATCTGGACCAGAGC 58 43587158 43587176 AAACAAACAGGCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050149.1 ENSRNOG00000047722 ENSRNOT00000073375 2 1 1 60 5 153549758 153549777 TTGAACTCAGAGATCCACCT 58 153549717 153549737 GCAACACATCCCTTTAATCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052548 ENSRNOT00000086446 3 1 1 60 14 86688750 86688769 ACAACATTGGAGATGAAGCG 59 86688789 86688810 CTGAGAAGTCGTAGGAATATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000060868 ENSRNOT00000089475 3 1 1 60 6 103567634 103567656 TCCTACATGAATATGGAGGTCTC 59 103567596 103567615 TGAACGATCAGACTTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.1 ENSRNOG00000055292 ENSRNOT00000087602 3 1 1 60 5 25726569 25726590 AACAGTGGATTGAATTTGGTGG 60 25726610 25726629 GATCTCTTATGCAGGGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002885.1 ENSRNOG00000052023 ENSRNOT00000089393 1 1 1 80 1 88387093 88387111 CTGGACTTAGACCAGAGGA 57 88381877 88387051 AATGAAGCATCCTAGTGAGAG 57 Novel Rattus norvegicus 81 AABR07002885.1 ENSRNOG00000052023 ENSRNOT00000089393 2 1 1 80 1 88387092 88387110 TGGACTTAGACCAGAGGAC 58 88381876 88387051 AAATGAAGCATCCTAGTGAGAG 58 Novel Rattus norvegicus 81 AC141573.1 ENSRNOG00000057637 ENSRNOT00000091017 1 1 1 80 4 84591288 84591308 GTCTTACCTTCCCGAGCTG 60 84591226 84591244 CACAGCAGAAGTGTTTGCT 59 Novel Rattus norvegicus 81 AABR07061022.2 ENSRNOG00000061699 ENSRNOT00000085205 3 1 1 60 4 102876049 102876067 GACCCAGTCTCCATCTTCC 59 102876090 102876109 CCGGCAAGTAATAGTGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027235.1 ENSRNOG00000051931 ENSRNOT00000079788 1 1 1 79 17 20619326 20619344 TATAGCCAATGCCTACGTG 57 20619386 20619405 TGTGATGTGTTGAGAGTGTG 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 U6 ENSRNOG00000059349 ENSRNOT00000086328 1 1 1 60 3 72157176 72157198 GATACAGAGAAGATTAGCATGGC 59 72157138 72157159 TGAGTTCTTAGGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131483.1 ENSRNOG00000007816 ENSRNOT00000010275 2 1 1 80 3 15772823 15772843 CATGGACACCCTTAATGTCTC 59 15772885 15772907 TGGAACTGTTTCATGGACG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057302 ENSRNOT00000079051 2 1 1 60 1 4731983 4732003 CTCAGTAGGTGACAAACAGGA 60 4732024 4732043 ATGTTCATCTGTTGATCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055549 ENSRNOT00000081735 1 1 1 60 20 12708998 12709016 GGTTTAGCTGACCTGGGAG 60 12709039 12709058 TAACCTCAGGACACTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028776.1 ENSRNOG00000056540 ENSRNOT00000085236 1 1 1 80 17 85749443 85749465 GAACTGCCTAACTTCCTAACC 59 85749501 85749525 GGAATAACACTCTAGTATTCGACAG 59 Novel Rattus norvegicus 81 AABR07028776.1 ENSRNOG00000056540 ENSRNOT00000085236 3 1 1 80 17 85749444 85749466 AACTGCCTAACTTCCTAACCT 59 85749503 85749526 GGGAATAACACTCTAGTATTCGAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052404 ENSRNOT00000086677 3 1 1 60 20 39121398 39121418 CATTGTAAATGGAGTTGCTGC 59 39121358 39121377 GAACAGGTAAATGTCACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056693 ENSRNOT00000085025 2 1 1 60 1 248174115 248174134 TACTTTGATCATCACGGTGG 58 248174155 248174175 CAGACTTGGAGTACAATGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055214 ENSRNOT00000083311 2 1 1 60 7 16079655 16079676 CCTATAAGTGTTGCAGATGTGG 59 16079616 16079634 TCTTCTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047140.1 ENSRNOG00000033979 ENSRNOT00000049520 1 1 1 60 5 21043773 21043791 ATGTCCGCTATCCAGAACC 59 21043731 21043751 CATCACCCTTACTTGCATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034751.1 ENSRNOG00000060656 ENSRNOT00000079948 1 1 1 80 11 87484196 87484214 GTCGGCCTCCTTAAGTCTG 60 87480064 87484155 TCTGCTTACTTGGATACCAGAC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041764 ENSRNOT00000063517 3 1 1 60 5 76085202 76085221 GCTTGATCTCGTCTGATCTC 58 76085241 76085262 ACTATCTAAGCATTAACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059543 ENSRNOT00000089008 3 1 1 61 10 86506609 86506631 CGATACAGAGAAGATTAGCATGG 59 86506570 86506588 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000058631 ENSRNOT00000084205 2 1 1 60 20 27933132 27933151 GACCAAAGAAAGTGGCTCTC 59 27933091 27933110 CTCAGACTCCCAATGTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028568.1 ENSRNOG00000053515 ENSRNOT00000085840 1 1 1 60 17 75190916 75190937 CTATAGCTTTGGCAGTTGAGAG 59 75190955 75190976 ATGGAAGTTGAACTTAGGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058188 ENSRNOT00000080426 3 1 1 60 13 65681968 65681988 AGAGATTAGTGTAGCCCTGTG 59 65682009 65682028 ACAAACATAGGACCCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000059616 ENSRNOT00000090027 3 1 1 62 3 76575120 76575139 AGATGTAAGAGACCCTTGGG 59 76575077 76575095 ATGAAGTAGGTGGCAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059094 ENSRNOT00000088266 2 1 1 60 14 83170409 83170427 AGATACTGGCATTGGGAGC 60 83170367 83170386 TTTGCATGTCTTCCTTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051641 ENSRNOT00000077515 2 1 1 70 14 17256619 17256637 CAAGAATGGAGGAGTCCGG 60 17256567 17256585 GTTTGATGCACAACCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055462 ENSRNOT00000078694 3 1 1 60 10 65247465 65247484 GAAGATAGCGTGACTATGGC 58 65247424 65247445 TCCAATGTTAGGATCAATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060994.1 ENSRNOG00000060746 ENSRNOT00000079277 2 1 1 80 4 102351074 102351480 GATTCCTGCTTCCAGAGGT 59 102351522 102351542 ATAGAGGTTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060959 ENSRNOT00000086837 2 1 1 61 3 66285402 66285423 GAAACAGATGAAGAGCTTGACC 60 66285442 66285463 GTGGAATACACCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061397 ENSRNOT00000086684 3 1 1 60 5 119052476 119052497 GTGGTTATTTACTCTGCAACAG 58 119052437 119052458 GAAACGTAATGACAAGGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045463 ENSRNOT00000070730 1 1 1 60 10 76491595 76491618 CACGTTTCAATCCTATCTGATCTC 60 76491558 76491576 TCTAAGTAGCAGCCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ct55 ENSRNOG00000027899 ENSRNOT00000031815 2 1 1 86 X 73523165 73525435 GCTCTTGGAAGATGATACCA 57 73523098 73523117 GTACTGAAGTGGATCCAGTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054387 ENSRNOT00000090469 2 1 1 62 10 76205600 76205618 CAGAGAAGATGAGCATGGC 58 76205644 76205662 AATATGGAACGCTCCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000052180 ENSRNOT00000089892 2 1 1 60 3 75024289 75024307 CTGTAGTGCTCTATGCCGA 59 75024330 75024349 GGAGGTCACCATATTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056318 ENSRNOT00000083994 2 1 1 61 7 8737050 8737070 CAGTTGTGACTGCTGTATCAC 59 8737087 8737111 CTGAATGTAGAAATAGCCTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035323 ENSRNOT00000053446 3 1 1 60 3 162114742 162114761 CCTGATCTCGTCTGATCTCG 60 162114782 162114802 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040834 ENSRNOT00000062587 1 1 1 60 13 66920074 66920095 TGATCTCAGAAGCTAAGTAGGG 59 66920035 66920054 TGTCAAGATGTCTCCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052337 ENSRNOT00000088717 2 1 1 60 20 27309015 27309035 GAGCTACATGCCTATTTGGTC 59 27308975 27308994 TTATCGAAGATCCACCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029836.1 ENSRNOG00000052646 ENSRNOT00000079764 1 1 1 80 10 53927054 53927072 GAGAGGGCAGATATCGCTG 60 53927115 53927572 TTCTTCCATCTTCTGGCCTC 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000051511 ENSRNOT00000088496 2 1 1 60 5 147585657 147585677 ATTAAGTCAACCAGGAAGGTC 58 147585698 147585717 CATCTGCAACAATTGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060457 ENSRNOT00000081998 2 1 1 60 4 115681888 115681908 CCATAGAAACTGTGACTCCTG 58 115681925 115681948 GTGACTAAATTCATCCTGAACCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031485.1 ENSRNOG00000061292 ENSRNOT00000092199 3 1 1 60 18 15316547 15316565 AACACATTTCTGCCTTGCT 58 15316589 15316607 CAGAGTGGAAGCAGATGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043886 ENSRNOT00000069153 2 1 1 60 13 7160216 7160236 ACCTTGAATATCCCTGTTCTC 57 7160256 7160276 ATGAATCAGATCCAATCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052610 ENSRNOT00000091875 2 1 1 60 10 69763778 69763797 TGAGTCAAGGGTTTAAGGGT 59 69763737 69763757 TCTGAGAGTTTGCTTTGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061712 ENSRNOT00000081663 2 1 1 70 5 107273411 107273429 AATGAGGTTTATCCGAGGC 57 107273359 107273378 AGGTAAGCATGTTGAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031184.1 ENSRNOG00000056808 ENSRNOT00000091534 1 1 1 80 18 3617482 3617501 AAGACCCAACAAATGTTCCA 58 3617417 3617439 TTACATTGCGTGAGCTCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000058098 ENSRNOT00000091380 1 1 1 60 19 5590755 5590773 GAGAAGATTAGCATGGCCC 58 5590713 5590731 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054523 ENSRNOT00000079075 3 1 1 61 4 106293119 106293142 TGACTTATAGAGACTATGCAGGTG 60 106293162 106293180 TTCTGCCACCTACAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000051692 ENSRNOT00000082406 1 1 1 60 7 80815629 80815647 CTGGCTGAGTGAGTAAGAC 57 80815587 80815607 GTAATGAACCATGCTAAGTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054493 ENSRNOT00000080198 1 1 1 60 15 27739023 27739043 AATTCGAGTTCAATGGCTGAG 59 27738983 27739005 GTAGTCTGAATTGGGTTATGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043983 ENSRNOT00000069250 1 1 1 60 13 73013662 73013681 GGCTATACCACCATGAAAGC 59 73013704 73013722 CAGCCCTACCCTTCTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055625 ENSRNOT00000088922 2 1 1 63 1 251057886 251057904 AATGAGGTTTATCCGAGGC 57 251057841 251057860 TCAGTGTTGAGTCTAAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000056183 ENSRNOT00000086099 2 1 1 81 10 104084168 104084186 ACCTGCTTTCCTTTGACTG 58 104084105 104084126 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054655 ENSRNOT00000090927 1 1 1 60 9 117907933 117907953 GGAACACGTCTTAAGTCAAGG 59 117907893 117907912 TGTTTGAGGTTCTAGCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052692 ENSRNOT00000082272 1 1 1 60 15 4063895 4063914 GGTCTCCTTATGCTTACCAC 58 4063854 4063878 GTCTATCCTCTTTCTATACAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061030 ENSRNOT00000088360 3 1 1 62 18 53669661 53669679 CTGCTGTGTAACAGGTGTG 59 53669617 53669635 CACTGAGCATAAGCAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000061360 ENSRNOT00000084803 2 1 1 63 20 45357216 45357239 ACTAGAGAAGTTTCTCTGACTGTG 60 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027744.1 ENSRNOG00000057345 ENSRNOT00000082713 1 1 1 60 17 43111010 43111033 GACTTAGGAGATAAGAAGGAAGGA 59 43110973 43110997 CTGCTATCCTGTCAATAACTTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060156.1 ENSRNOG00000027692 ENSRNOT00000038047 1 1 1 60 4 60054390 60054409 GTACAAAGAACAACCAGCTC 57 60054429 60054450 CTAGTGAAGCCACATTTATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051602 ENSRNOT00000084654 2 1 1 60 6 108915267 108915288 CCCAATAGAATACTGAGGTGGA 59 108915228 108915250 CAGAACAAACTACTTGGACACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000055379 ENSRNOT00000080333 3 1 1 60 4 34530330 34530352 CGTACAATACTGAACTGACAGTG 60 34530292 34530312 TTCATATGTAGGACAGCCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054830 ENSRNOT00000081076 2 1 1 89 6 49954997 49955015 TAGAACCATTGCAAGTGCG 59 49955068 49955086 GTCTGAACACTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054735 ENSRNOT00000090672 3 1 1 71 15 73946297 73946315 GCATGCTATGTCACATGTG 57 73946348 73946368 GTCAGAACACTGAACAAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052683 ENSRNOT00000089956 2 1 1 60 15 33967991 33968013 GGAACGATACAGAGAAGATTAGC 59 33968033 33968051 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064304.1 ENSRNOG00000046049 ENSRNOT00000072488 3 1 1 81 6 74913281 74913299 GTGTGGTGTCAAACACTCC 59 74913344 74913364 TCACATCTGGGATGATGCT 59 Novel Rattus norvegicus 81 AABR07051238.1 ENSRNOG00000057800 ENSRNOT00000091481 3 1 1 60 3 2267589 2267611 GTTTACCTGTCTATGAGATGGGA 60 2267625 2267649 TAGTTAATCCTGCCTAAGAGATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.1 ENSRNOG00000053661 ENSRNOT00000082447 2 1 1 80 4 164119585 164119606 GAATGGATGTAAACAAACCTGC 59 164115965 164119546 CGAAGGAACTTCAGTTCATCC 59 Novel Rattus norvegicus 81 AABR07063632.1 ENSRNOG00000029825 ENSRNOT00000044583 2 1 1 84 6 38006786 38006804 AATCCCTCATTGTGAGGGC 60 38006633 38006738 TCGTTCCAGACCAGAACAC 60 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000058349 ENSRNOT00000084877 3 1 1 60 18 47569980 47569999 GTCAGTTGCAGATTGAAGCC 60 47570020 47570040 CTAACTAAGTACAGCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054823 ENSRNOT00000079843 2 1 1 66 6 86491654 86491672 AATGAGGTTTATCCGAGGC 57 86491700 86491720 TAATAAGCCTCAGTATGCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034498 ENSRNOT00000052621 3 1 1 60 10 18117447 18117466 TCTCATCTGATTGCAGAAGC 58 18117406 18117424 TGGTCTCCCATCCAAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054693 ENSRNOT00000081609 3 1 1 60 7 92034046 92034064 GTGCATCAGTTGGTGACAG 59 92034088 92034106 CTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056195 ENSRNOT00000085457 2 1 1 60 3 95997512 95997530 AGTTGGAATAGGAGCTTGC 58 95997554 95997572 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060774 ENSRNOT00000090511 3 1 1 75 18 26426382 26426402 CCCATTCAGTAGCACATACAC 59 26426439 26426457 TTCTGTCATCCTTGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052105 ENSRNOT00000089755 3 1 1 60 X 131743062 131743080 TTCCAGGGTTGATTTGCCA 60 131743102 131743122 GTATTGAGGGAGGAAGGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Aim1l ENSRNOG00000057957 ENSRNOT00000089849 1 1 1 80 5 152310630 152310905 ATCCGTACGGACTTTGGAG 59 152310949 152310967 GGAACTCACCTCCACTCTG 59 Novel Rattus norvegicus 81 AC135265.1 ENSRNOG00000042387 ENSRNOT00000046606 2 1 1 60 18 70960416 70960437 GCTTTAATGTGTCAGTACAGGA 59 70960455 70960476 TCATAGATACCGAAGTAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054451 ENSRNOT00000083095 3 1 1 60 18 25387721 25387740 TCGAATGTTCATCAGCAGGT 60 25387680 25387698 CACAGGTCAGGACATGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000087321 1 1 2 78 20 3952241 3952259 CTACACTCCTCTCCCTGGA 59 3952565 3952583 CTGGATCTCCTTCTCAGCG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA29 ENSRNOG00000059086 ENSRNOT00000088550 3 1 1 78 X 51188166 51188184 AGTGGCTATGTTTAAGGGC 58 51188106 51188127 TCATATAGAGGAAAGTCAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000057490 ENSRNOT00000082371 3 1 1 60 10 55950917 55950935 GGCTCTATTTCCTGGGAGG 59 55950875 55950893 ATTCTAGGCTCTGCTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0405.3 ENSRNOG00000051142 ENSRNOT00000076145 1 1 1 60 8 40505585 40505603 TGCTTTGAATCCTCACCTG 58 40505625 40505645 TGTGAAGGAAAGGTTGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045187 ENSRNOT00000070454 2 1 1 60 X 119875341 119875362 CCTGAATGTACCCAATCATGTC 59 119875302 119875323 ATACTAACCAGGACTGACTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063638.1 ENSRNOG00000036511 ENSRNOT00000054618 2 1 1 60 6 38572552 38572570 ATGATCCAGCCATCTCTGG 59 38572593 38572612 CCTAGTCATGCTTGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053761 ENSRNOT00000081960 2 1 1 61 6 133834489 133834507 GATTGATGATGGCCACTCG 59 133834530 133834550 GGACCTCAGAGACTTAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 1 2 2 60 6 143194593 143194611 GCTCACAATCTCCAAGGAC 58 143194551 143194571 GTCCACATTGGTGATCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058540 ENSRNOT00000089909 3 1 1 67 X 71048358 71048376 TAATCAGGTCAGGCTCAGC 59 71048309 71048327 ATACCACACCTAGGTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061417 ENSRNOT00000082960 3 1 1 60 6 3513067 3513088 GCAGTGAGATACTATTATCGCA 58 3513028 3513046 AGAGTACCATGGATGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051864 ENSRNOT00000083230 3 1 1 61 20 50377325 50377343 GTGTCAGTAAGTGGCAGAG 58 50377282 50377301 GTTTACAGAGCAGAACGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 2 2 2 94 8 64825815 64825833 TTCATTCCTGGAGAAGCCC 59 64822301 64825757 TCTTGGAACACATGCTCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057640 ENSRNOT00000077160 3 1 1 61 5 43674578 43674600 GATACAGAGAAGATTAGCATGGC 59 43674616 43674639 GGAACTAGGAAAGTGAATACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061228 ENSRNOT00000090649 1 1 1 60 20 10898591 10898615 ATCTACAATAGGAGAAACTCGTAGG 60 10898630 10898651 TAGTAAACCTCCAAGTGTGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056821 ENSRNOT00000089330 2 1 1 60 15 8020703 8020722 CAAGTTGGACATGTTGACCC 60 8020662 8020680 CAAATGTGGCCAAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000056084 ENSRNOT00000088136 2 1 1 60 5 33176043 33176061 GTGGCCCTTCTGTTTACAC 59 33176001 33176019 AGGACATGAGTCTTGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044895 ENSRNOT00000070162 1 1 1 60 4 121147380 121147399 CTCATCTGATCTCCAACGCT 60 121147339 121147358 TTCTTCCTCTGAGCCAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060424 ENSRNOT00000091293 1 1 1 60 4 135568296 135568316 GCAACACAGAGAAGATTAGCA 59 135568338 135568356 GAAGCATGAGTGTTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052656 ENSRNOT00000086581 2 1 1 60 11 24095676 24095695 CAACTAAAGAGGGTGATCGT 57 24095635 24095656 TCTTATTCCCTTGACAGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051751 ENSRNOT00000082068 1 1 1 60 11 85393945 85393963 GCAGCTGCTATGACATCTG 59 85393903 85393925 GAGTATAGACACTGTTTCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055280.1 ENSRNOG00000046183 ENSRNOT00000074061 3 1 1 60 7 1045610 1045628 TAGTGAAGTTAGCCCACCC 59 1045568 1045587 CTGTTCTTTGGAAGGAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062500.1 ENSRNOG00000041515 ENSRNOT00000063268 1 1 1 60 4 180090963 180090984 CATTGGAAGAAGGAAGACTCTC 59 180090924 180090943 TAGCAGTTGCTCAGTCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055903 ENSRNOT00000086913 2 1 1 61 7 64952095 64952113 TGTGAGGATGATCTGGCTG 59 64952138 64952156 TCAGCTGAACTAACCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117869.1 ENSRNOG00000031439 ENSRNOT00000041965 2 1 1 60 19 44267831 44267851 CAGTACAAGTTACTGGAGCCT 60 44267872 44267891 TATCCACACCAGCAAATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055788.1 ENSRNOG00000056930 ENSRNOT00000087352 2 1 1 60 7 10062646 10062664 ACTGGACGAACAGAACGAG 60 10062604 10062623 CTCATCTGTGTTCTCCACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056503.1 ENSRNOG00000053843 ENSRNOT00000077976 1 1 1 60 7 27440683 27440701 GCAAGGTGTTCTTTCCGTC 60 27440723 27440743 CTTTGTCTGTGAACCACTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061628 ENSRNOT00000090185 1 1 1 60 19 33861524 33861542 TGTCCCTAGAGCATTGCAG 60 33861482 33861503 TCTCTTTATTCCTACAGACGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056199 ENSRNOT00000085974 1 1 1 60 5 127567571 127567589 CAAGCAGACGCCTAAAGAG 59 127567610 127567631 TCTATTGAAGTCCAGAAGAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052642 ENSRNOT00000092229 2 1 1 60 19 12375605 12375626 TTTGTTGACTCCTGAGATTTCC 59 12375646 12375665 TACCACCACAAAGTATGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120246.1 ENSRNOG00000048000 ENSRNOT00000071810 3 1 1 60 19 25668835 25668853 ATGTAGACCAGGCTAGCCT 60 25668876 25668895 TAATACTCAGGAGGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060717 ENSRNOT00000085490 2 1 1 65 18 43591335 43591357 GGGACATACCATAATCAAGAAGG 59 43591292 43591310 CATATCCAGTGTGCAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052338 ENSRNOT00000087210 2 1 1 60 11 31093640 31093660 CAGTTGTACTGTAGCTGTTGG 59 31093682 31093700 TAAACCACAGGAGGACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007385.1 ENSRNOG00000050701 ENSRNOT00000072289 2 1 1 81 2 11885808 11885826 TAAAGGCATTTCCCACCCA 59 11885870 11885891 AGAGACAGTACGTAGCAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059336 ENSRNOT00000091303 3 1 1 60 7 141967416 141967435 AACACTGGAACGATACAGAG 57 141967375 141967393 GAATCTGCGTGTCATCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056622 ENSRNOT00000079147 1 1 1 60 7 15854144 15854165 ATGTCACTCCCATTGATTACTG 58 15854185 15854204 ACTGTAAGGGAACAAAGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051577 ENSRNOT00000089012 3 1 1 60 5 109013251 109013269 AGAAGATTAGCATGGCCCA 59 109013209 109013228 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061915 ENSRNOT00000088883 3 1 1 60 18 7407048 7407066 GTGCCTTTCTTTCCACACC 59 7407088 7407108 CCTCTTTCAGTGAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015112.1 ENSRNOG00000058903 ENSRNOT00000084585 3 1 1 87 14 47268304 47268323 ACAATCAAACAGGTGAAGGA 57 47268371 47268392 TCCTTTGGTTTATATCCAGGG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059484 ENSRNOT00000088636 3 1 1 68 3 83540151 83540169 TAGAGGGATTGCAGGTGTG 59 83540200 83540219 ATAGCCTCTGTCCTTTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061720 ENSRNOT00000091385 2 1 1 60 20 32354859 32354881 GGAACGATACAGAGAAGATTAGC 59 32354901 32354919 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000061903 ENSRNOT00000082308 1 1 1 88 6 43365337 43365355 TTGCTAGTGACCCACTGAG 59 43365407 43365425 TTGACTGAAGCAAACAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051898 ENSRNOT00000085878 2 1 1 60 11 50431629 50431647 GTCTCCCACTTCTCCTAGC 59 50431587 50431605 GTCAGAACACTGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 2 1 1 100 1 222525745 222525763 CTCAGACCAAGGGCTTCTC 60 222525661 222525680 CCACCCTTATCTTGGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065031.1 ENSRNOG00000047682 ENSRNOT00000073216 2 1 1 83 6 105037115 105037137 GTCATGAGTTCTTTCAGAGTTCC 60 105037048 105037073 ACAACTTCCGTTTAAAGTGGTC 60 Novel Rattus norvegicus 81 AC139605.1 ENSRNOG00000060996 ENSRNOT00000091556 3 1 1 152 7 117644268 117644286 AGTCTCCCTAAAGGCACTG 59 117644133 117644151 GATTCTGCTTTCCGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061501 ENSRNOT00000085842 2 1 1 60 9 83766090 83766108 TACTCCAGATGTCCTGACC 58 83766048 83766069 AAATTATTCAGCCCACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051370 ENSRNOT00000086730 2 1 1 60 5 73747137 73747155 GTGGTGCACACCTATAGTC 58 73747179 73747197 AGACTCAAGTGGTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052826 ENSRNOT00000077203 2 1 1 60 5 8730020 8730040 GGTCATTAGACTGATATGGCT 57 8729980 8729998 ACTTGGAACTGTGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055521 ENSRNOT00000052795 3 1 1 60 9 112906013 112906031 CCCGATCTCGTCTGATCTC 59 112905971 112905991 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051887 ENSRNOT00000084108 1 1 1 60 7 3872752 3872771 TCAAAGAGGACAACCTTCCA 59 3872711 3872729 ACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.2 ENSRNOG00000046017 ENSRNOT00000073849 1 1 1 88 19 30646583 30646602 CCCAGATGACTAAGGATGCT 59 30646652 30646671 ACTACTGCATTATGCAAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058687 ENSRNOT00000077234 2 1 1 61 11 2143675 2143693 GTGTCAGTAGGTGGCAGAG 60 2143715 2143736 GTCACAGATCAGAACACTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000051396 ENSRNOT00000081382 3 1 1 65 6 133759961 133759979 CAATGATGAGGAGCATGGG 58 133760005 133760026 AGTCCTCAGATTTCATAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059884 ENSRNOT00000083397 1 1 1 60 7 116985978 116985996 GGGCTCTACACTTGGACAG 60 116986020 116986038 GTGACAGATACAGCTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059884 ENSRNOT00000083397 2 1 1 60 7 116985983 116986001 CTACACTTGGACAGACTGG 57 116986025 116986043 CTCTGGTGACAGATACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052655 ENSRNOT00000084876 2 1 1 60 4 101119523 101119543 CTTGCTAATTGACAAGGAAGG 57 101119483 101119502 TACTGCTTTCATTGTGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061585 ENSRNOT00000083060 3 1 1 61 4 80302882 80302900 GGAAGCTGTGTCTATGCTC 58 80302839 80302860 TGTTAGGTTACCCATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053493 ENSRNOT00000088359 2 1 1 60 17 18319721 18319743 GGAACGATACAGAGAAGATTAGC 59 18319763 18319781 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000056151 ENSRNOT00000080165 2 1 1 80 2 21606002 21609454 CAAGAAGATCAAGAAGGTTCAGAG 60 21605945 21605965 ATGTAGTCCTGAACGATGGTC 60 Novel Rattus norvegicus 81 Nwd2 ENSRNOG00000051837 ENSRNOT00000079269 1 1 1 81 14 46150400 46150418 AAAGCTGCTACCAAACTGC 59 46147631 46150356 CCTCGATAGCTGAGAACAGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000052939 ENSRNOT00000084284 2 1 1 60 4 143430843 143430864 ATCGGAATTTCTCCTGAATCTG 58 143430885 143430903 TCTCTTACGTGGGAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051804 ENSRNOT00000091959 2 1 1 60 4 93889286 93889304 CAGTAGGAGGCAGAGAAGG 59 93889244 93889263 TAGGTCAGGATGTTGGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061693 ENSRNOT00000085608 2 1 1 60 17 79115918 79115938 TGAAATAGGAACCGTTCAGAG 58 79115878 79115896 ACGTATTTGAGTGTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061693 ENSRNOT00000085608 3 1 1 60 17 79115918 79115938 TGAAATAGGAACCGTTCAGAG 58 79115878 79115897 ACGTATTTGAGTGTGACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061717 ENSRNOT00000090020 3 1 1 61 7 23826040 23826063 GAACACTACAGATATTAGCATGGC 60 23826080 23826101 GAATGCTTCACAAATTTGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000083031 2 1 2 95 6 138535944 138535962 CTCCAAGAGCCAAGTTCTC 58 138535716 138535887 AAGAGTCCATATCTCACTGTG 57 Novel Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000077743 2 1 2 104 6 138536182 138536285 TTTCAAAGCTGTCTCCTGTC 58 138536097 138536115 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000054659 ENSRNOT00000078118 3 1 1 60 4 9892049 9892070 TGGTGTTGTTCTTACATCAGTC 59 9892091 9892109 TAGGATGAGCAAAGGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067080.1 ENSRNOG00000057659 ENSRNOT00000085416 1 1 1 96 9 29571896 29571918 GATATTGTGGATAACTGTGCCA 59 29571821 29571839 TACACTCTTCGGAAGTGGC 59 Novel Rattus norvegicus 81 AC096473.3 ENSRNOG00000055700 ENSRNOT00000082862 1 1 1 105 7 120202645 120235755 CCTAAAGGAAAGGCAGGAC 58 120430176 120430194 AGACAGCATGAACTCACAC 58 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076517 3 1 3 102 20 44616990 44617011 GATTGTGAACCTTCCATACAGG 59 44602994 44616927 AACTGCCTGACGAGTAACC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044574 ENSRNOT00000069841 1 1 1 62 4 11017889 11017907 GATCTCGTCTGATCTCGGA 58 11017845 11017863 CATAGGCATTGTGTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051731.1 ENSRNOG00000053899 ENSRNOT00000088492 3 1 1 81 3 20375739 20375889 GGCTTACAGGTGGTAAATGTG 59 20375929 20375950 ATGGTGACAATTTCTTCCAGAG 59 Novel Rattus norvegicus 81 AABR07062694.1 ENSRNOG00000052732 ENSRNOT00000089136 1 1 1 80 6 3416575 3416597 AGATTTCACCTCACATGCG 58 3416640 3416659 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07057511.1 ENSRNOG00000059775 ENSRNOT00000080269 1 1 1 60 7 75495544 75495562 CTGGCATTGTTAGCCAACC 60 75495586 75495605 AGCAGGATTGTAAAGGAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 2 1 1 69 2 26870164 26870182 AATGTCTGTACAGCCAGCA 59 26870017 26870132 ATAGGCCCTTAAGACCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012843.1 ENSRNOG00000056341 ENSRNOT00000090714 3 1 1 69 2 210338337 210338356 CTGTCGGATTACAGCATTGG 59 210338282 210338300 CAGTGCCTACATCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025757.1 ENSRNOG00000053529 ENSRNOT00000083803 3 1 1 97 16 48229197 48229217 GCACAGTTCTCAGTATACTGC 59 48229276 48229295 TCTGAACAACTGAGCATGC 59 Novel Rattus norvegicus 81 LOC680428 ENSRNOG00000042701 ENSRNOT00000065405 1 1 1 60 10 87808856 87808874 TGCTTCCTACCAACTTGCT 59 87808898 87808916 AGGTGGGTTTAATCGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 2 2 2 80 20 4539090 4539215 CATGACTGATGGCTTGCAC 60 4539028 4539047 CTGCCAATATCCAGCAAGTC 59 Novel Rattus norvegicus 81 AABR07041972.1 ENSRNOG00000058507 ENSRNOT00000088855 2 1 1 60 X 144418165 144418185 AAGACTGCATCATCTGTATGG 58 144418207 144418225 TCAGTCACGTCACTGTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036336.1 ENSRNOG00000056739 ENSRNOT00000077521 2 1 1 108 12 39021388 39021414 TTTGCTTTCCTTATGTCTAGGG 58 39021299 39021318 CGCTAATTTCTTTCTGAGCC 57 Novel Rattus norvegicus 81 AABR07002250.2 ENSRNOG00000059513 ENSRNOT00000083609 1 1 1 80 1 69876856 69876877 TTGATGATTCTCAGAGACTCCT 59 69876917 69877351 CAGGTATGAGTCCCAATGAG 58 Novel Rattus norvegicus 81 AABR07042388.1 ENSRNOG00000052411 ENSRNOT00000085391 3 1 1 87 X 154739306 154739326 GGAGAGGAAGATAGACTGGAG 59 154739372 154739397 TCTGTCAACAACATTCCTTCTC 59 Novel Rattus norvegicus 81 AABR07002068.1 ENSRNOG00000045583 ENSRNOT00000075269 3 1 1 80 1 65832444 65832713 ATTACCTTCCATCCCTCCA 57 65830803 65830821 GTATTGATGCAGAGGTGGT 57 Novel Rattus norvegicus 81 Rn60_10_0876.3 ENSRNOG00000061784 ENSRNOT00000065487 3 1 1 61 10 87731223 87731241 CATGGTGTCAGAGGTGGAG 60 87731265 87731284 TTCCAAACCTTTCAACCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040282.1 ENSRNOG00000061407 ENSRNOT00000089023 3 1 1 60 X 96822698 96822719 CCAGTGTCTTTGTTGATTACCA 59 96822659 96822678 TCTGACTTGACTTGCAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071328.1 ENSRNOG00000043551 ENSRNOT00000068818 2 1 1 62 8 109711134 109711152 GTGTGGCCTTATTGGAGGA 59 109711178 109711196 GCTTGAGCATCTGAAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.3 ENSRNOG00000060421 ENSRNOT00000085101 3 1 1 60 X 152889430 152889449 CAGAACCTTGGGAAATGGTG 59 152889470 152889490 TGCTGGTTGATGGTTATAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053199 ENSRNOT00000090613 2 1 1 60 3 39643933 39643953 TACAGAGAAGATTAGCATGGC 58 39643893 39643914 TGGAACACTTCACGAATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.1 ENSRNOG00000032424 ENSRNOT00000049362 3 1 1 60 7 29909359 29909379 AGAGAAATTTGAGGGTGAGGA 59 29909401 29909419 CATGGACAAGATGCCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058641 ENSRNOT00000081270 2 1 1 60 3 25148527 25148547 GCTAATTAAGCCGATCAAGTC 57 25148569 25148587 GTTTGCAACCATTGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053604 ENSRNOT00000082382 2 1 1 60 8 71935943 71935963 CAAAGGCTTGGTTAAAGATGG 58 71935983 71936003 ATACCTTTGACAGGAGAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052517 ENSRNOT00000081691 3 1 1 80 13 45222040 45222058 TTCTTCATGGGAACCTGGT 59 45222102 45222120 AACTCATAAGGGCAGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.2 ENSRNOG00000056233 ENSRNOT00000089462 2 1 1 76 1 198938320 198938338 CTGTGTTCCTAGCCTCTGG 60 198938378 198938396 GGATTCTGCCTGTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.2 ENSRNOG00000056233 ENSRNOT00000089462 3 1 1 91 1 198938304 198938322 AATCCTCAGACTGGTGCTG 59 198938377 198938395 GATTCTGCCTGTCCTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055629 ENSRNOT00000080201 1 1 1 60 8 46044340 46044361 GGAGATACTATGATCACAGAGG 57 46044301 46044323 GAGTCAACATATCTAGATGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.1 ENSRNOG00000057879 ENSRNOT00000089121 3 1 1 60 20 4910549 4910567 CAATGTTGGCAATCACGAG 58 4910588 4910609 ATGATATCCTTTCTCCTTCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030630.1 ENSRNOG00000052124 ENSRNOT00000077567 1 1 1 60 10 96661763 96661781 AACTCAAAGTACCTCCTGC 57 96661805 96661823 GTAGCTGTTTCACAGTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054547.1 ENSRNOG00000008136 ENSRNOT00000010732 1 1 1 94 3 159452573 159452599 CTGTCACCCAATGTTCTTAAGAG 60 159452501 159452519 TCTTCTGGGCATTGGTCTC 59 Novel Rattus norvegicus 81 AC128059.1 ENSRNOG00000049620 ENSRNOT00000071360 2 1 1 62 8 116713529 116713548 CTGGCCTTGAACTCATAGAG 58 116713573 116713591 CACGCCTTTAGTCCTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035428.2 ENSRNOG00000059768 ENSRNOT00000080997 2 1 1 62 12 14183281 14183299 GGAAGTTCTCGCCATTCTG 59 14183325 14183343 CACGGACTTCCTGTTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066339.1 ENSRNOG00000048566 ENSRNOT00000074536 1 1 1 77 9 8026008 8026026 CCCGGAAAGAATTCCAGGA 59 8027007 8027028 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA16 ENSRNOG00000059346 ENSRNOT00000086369 1 1 1 60 8 2382004 2382024 GCTGCTTCTAGATAGCTTCTG 58 2382044 2382064 TCTCAAGGAACTGGGTTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067759.1 ENSRNOG00000057866 ENSRNOT00000084904 2 1 1 141 9 61655962 61655980 TCATCTTTGTGAAGCCGGT 60 61655838 61655856 GGACTTAGTGGGAAGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059364 ENSRNOT00000088486 3 1 1 60 8 79444913 79444933 CGATACAGAGAAGATGCATGG 59 79444954 79444973 TGGAAGCTTCAGGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000059581 ENSRNOT00000090357 2 1 1 65 8 118196838 118196856 GGCTCTGTCTATGACACTG 57 118196791 118196809 CTGGCTTCTGAAAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071819.1 ENSRNOG00000041639 ENSRNOT00000063392 2 1 1 60 8 132768306 132768329 GACATTAGAAGAAGGAAGACTCTC 59 132768347 132768366 AGTTACTCAGTCCCACAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128962.1 ENSRNOG00000000478 ENSRNOT00000000560 3 1 1 60 20 5491426 5491446 CTGCTTATATGTACGTGTGCT 58 5491386 5491404 TATTTCTGTCCAGGACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045632.1 ENSRNOG00000031969 ENSRNOT00000041101 2 1 1 102 20 54072036 54072060 GAATTACCTTCAGAATTACAGGGAG 59 54072120 54072139 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070679.1 ENSRNOG00000012758 ENSRNOT00000017015 3 1 1 60 8 80003512 80003530 CAACAGAGAAATGGCAGGA 58 80003470 80003491 TATAGTAATCATCAGCGATCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024500.1 ENSRNOG00000056629 ENSRNOT00000091719 1 1 1 60 16 2061725 2061747 GTACACCTCTAGGATTTGATGAC 59 2061764 2061785 TCAAACTCTGTGACATCTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025896.1 ENSRNOG00000052858 ENSRNOT00000080696 3 1 1 60 16 54386646 54386664 ACGGTAATGACACTCTGGG 59 54386687 54386706 GGAGACTGATTCACAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.2 ENSRNOG00000055150 ENSRNOT00000078427 2 1 1 86 3 61672756 61672774 AGAGGTAGACCTTCCAAGG 58 61672687 61672706 GACAGCATTAGCCAAACAG 57 Novel Rattus norvegicus 81 AABR07026596.2 ENSRNOG00000055140 ENSRNOT00000088012 2 1 1 60 16 85305669 85305688 ATCTTCTCCTTTCTCAGGGC 59 85305710 85305729 TAAGTCTGCAAAGAACCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057217 ENSRNOT00000083422 1 1 1 60 3 22047454 22047472 GAGAAGATTAGCATGGCCC 58 22047412 22047430 AATGTGGAACGCTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000058310 ENSRNOT00000082291 3 1 1 60 3 39210088 39210109 TCCCTTGAAACCTAGAACTCAC 60 39210049 39210070 CATGTCCCTTCTTGTATGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060569 ENSRNOT00000077267 1 1 1 60 3 72885458 72885478 TAGAGCAGAGGAAATCCAGAC 59 72885418 72885436 GAGTTGTAGAGACAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061745 ENSRNOT00000079666 2 1 1 60 3 141471560 141471579 TGCTTGATTGAAGAGGATGC 59 141471519 141471537 TGAACTCACATGCCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061745 ENSRNOT00000079666 3 1 1 60 3 141471554 141471573 ATTGAAGAGGATGCCCTTCC 60 141471513 141471531 GTGGCTTGAACTCACATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130232.1 ENSRNOG00000039505 ENSRNOT00000060549 2 1 1 60 16 19622250 19622268 GGCCCATTGGAGAATTCAG 59 19622290 19622310 ACATTACATCGCAACAGTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031234.1 ENSRNOG00000054469 ENSRNOT00000091733 1 1 1 80 18 5024843 5024861 TTGTCCTGTTCAACGTTCC 58 5022454 5024799 ACTCGGGTACCCAAATCTG 59 Novel Rattus norvegicus 81 AABR07046725.1 ENSRNOG00000053388 ENSRNOT00000085297 3 1 1 92 5 3628130 3628149 CTGATGGGAACTCTACCACC 60 3627605 3627624 GGATGGAGTTGGAAGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014875.1 ENSRNOG00000058665 ENSRNOT00000088185 3 1 1 80 14 34905940 34906493 ATGTTCCAAAGGTCGTGAC 58 34906534 34906555 TGGGATAATTAATCGTCTGGAG 58 Novel Rattus norvegicus 81 AABR07031328.1 ENSRNOG00000061291 ENSRNOT00000087124 3 1 1 81 18 9430267 9433032 TAATTGTCTCGAGGTCCGG 59 9430204 9430225 TAGAAACTGCCATCATGTTGTG 59 Novel Rattus norvegicus 81 AABR07062670.1 ENSRNOG00000053605 ENSRNOT00000077476 2 1 1 80 6 2533797 2535018 ACACAGAAGCAAATCAAAGC 58 2533736 2533754 TCTTTGCTTCCTTGAACGA 57 Novel Rattus norvegicus 81 AABR07014897.1 ENSRNOG00000052390 ENSRNOT00000091721 1 1 1 80 14 36889987 36890202 GAAGGTCAGGAAGATACTTATCC 58 36889929 36889950 TGACATTTCTACTCAGAGAAGC 58 Novel Rattus norvegicus 81 AABR07046830.1 ENSRNOG00000051477 ENSRNOT00000079045 2 1 1 138 5 8611718 8611738 TAGACTGTAGAAGGAATGCCA 58 8611837 8615209 ACTTAAGTGGGTCCACTCTC 59 Novel Rattus norvegicus 81 AABR07047008.1 ENSRNOG00000057195 ENSRNOT00000088415 1 1 1 81 5 14878890 14879492 CTTGTGAAGGACTAGCGAC 58 14879537 14879555 TCTCATCCATGGACCAGAG 58 Novel Rattus norvegicus 81 AABR07031526.1 ENSRNOG00000053150 ENSRNOT00000083801 2 1 1 80 18 17876100 17878482 TTTCCTTCTCCTGGTTCTGG 59 17876039 17876057 TCGGCCTTAAGATGAGAGG 59 Novel Rattus norvegicus 81 AABR07000385.2 ENSRNOG00000058425 ENSRNOT00000082588 1 1 1 180 1 11840126 11840144 AATACCATCCCAGCTAGCA 58 11837797 11837815 CCTGGACATCAGAGACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 3 2 2 86 1 11985928 11985947 CTGAAAGAGTTGCTGCAGAG 59 11984278 11985879 TCTTTGGTGAAACCCTGCT 60 Novel Rattus norvegicus 81 AABR07000411.1 ENSRNOG00000055789 ENSRNOT00000087070 2 1 1 82 1 12006794 12086536 GCTTCATCAGCTGGAATGAC 59 12086580 12086599 CAGTTGGCTCATGATCTCAG 59 Novel Rattus norvegicus 81 AABR07029831.1 ENSRNOG00000053014 ENSRNOT00000086494 3 1 1 95 10 53685837 53685855 GAGAGCAAACACTGGTGTC 59 53680332 53685778 CCTTTGCATTCACAACGGA 59 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 1 2 2 80 14 61651300 61660207 CCATTCTTAAGTATATGACTGACGG 59 61660243 61660263 TTATCACACCATAACGCTCCA 60 Novel Rattus norvegicus 81 AABR07015647.2 ENSRNOG00000061727 ENSRNOT00000078124 2 1 1 87 14 68659613 68662052 AAACACCAGGAAGGACAGG 60 68659544 68659562 TGTAAACTGCCAGGAAGCA 60 Novel Rattus norvegicus 81 AABR07061022.1 ENSRNOG00000053033 ENSRNOT00000083892 2 1 1 60 4 102804959 102804979 TTTATTGGGTTCTTGTGGCTC 59 102805112 102805130 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030180.1 ENSRNOG00000055718 ENSRNOT00000090718 1 1 1 80 10 74152533 74153631 TTATTTCAGCTGGAAAGCCA 58 74152472 74152490 TATCCCAGAGCTGAACTCC 58 Novel Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 1 1 1 60 5 46306982 46314589 GTTAGCACAGAGTGGATTTCAG 59 46306943 46306963 GGTGATTCTCCAAGACTACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030235.1 ENSRNOG00000053740 ENSRNOT00000087117 2 1 1 81 10 77080668 77080686 GCATGGATTTCCGAAGCTG 60 77080727 77081942 TCCTTCCACATCTCCATATTGAG 60 Novel Rattus norvegicus 81 AABR07047840.1 ENSRNOG00000055803 ENSRNOT00000091267 1 1 1 80 5 49959596 49981650 GATCACTGAGGATTCCTAGGAG 59 49981691 49981709 GTTTCAGCGTCTCCAACTC 59 Novel Rattus norvegicus 81 AABR07000544.1 ENSRNOG00000055971 ENSRNOT00000091657 1 1 1 80 1 17432133 17432295 GCATTATGGAGGGACAAGC 59 17432337 17432357 CTAGAATAGTGCAGTGGTCCT 59 Novel Rattus norvegicus 81 AC095078.3 ENSRNOG00000061792 ENSRNOT00000080749 1 1 1 63 4 117552445 117552463 GACTCCTGTCAAGGACTCG 60 117550953 117550971 AAACCGGAGGACAGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071851.2 ENSRNOG00000053999 ENSRNOT00000078878 3 1 1 81 1 21434824 21434843 CTTCCATCTGTCCGTTTGTG 59 21405966 21434785 CAGATCCTGCCTTTATAAAGATCC 59 Novel Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 3 1 1 65 14 103887469 103887487 GCATCAGACTGGAAGACTC 58 103887174 103887440 ATCCAGTGCTGAAGGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016578.1 ENSRNOG00000054531 ENSRNOT00000089463 2 1 1 109 14 105141424 105141442 CAGGAAGACACTAGGTGGC 60 105138323 105138341 GCACAGAGCTTAAGAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061609.1 ENSRNOG00000057913 ENSRNOT00000087666 2 1 1 96 4 135877625 135886920 TCATAATGAGGCCAACGCA 60 135886976 135886998 GACTGGATAAACTCAACCTTCTC 59 Novel Rattus norvegicus 81 AABR07061807.3 ENSRNOG00000054089 ENSRNOT00000080989 3 1 1 81 4 146300480 146306407 AGACAGTGCAGATTCGTCTC 60 146306451 146306469 CTCTGGAGGGAGTATCCCA 60 Novel Rattus norvegicus 81 AABR07030593.1 ENSRNOG00000058343 ENSRNOT00000082824 1 1 1 112 10 95145647 95145665 GTCTTCCTCGCTTCTACCC 60 95136047 95136066 TATCATGAATTTGGCACGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061847.1 ENSRNOG00000061410 ENSRNOT00000084210 1 1 1 90 4 149184297 149191770 GTGGAACTGCAAACGAGAG 59 149184225 149184246 GTCAATAGGTGTGATTCGAGTG 59 Novel Rattus norvegicus 81 AABR07061899.1 ENSRNOG00000052822 ENSRNOT00000078796 1 1 1 62 4 151887087 151887105 TTCCTTACAGTGCCACTCC 59 151887043 151887067 GTCTAACAATGAAAGTCTATGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030657.1 ENSRNOG00000057482 ENSRNOT00000078974 1 1 1 99 10 97938022 97939314 GACTATAGCTTGGCCTCGG 60 97937941 97937959 GATGGATCTCCCGTCTCTG 59 Novel Rattus norvegicus 81 AABR07016845.1 ENSRNOG00000060365 ENSRNOT00000087777 2 1 1 113 15 1618059 1618079 AGGAGCTCTTTGAAGTTAAGG 58 1492733 1617986 CTGTTCATTGGAAACCAAGAC 58 Novel Rattus norvegicus 81 AABR07072439.1 ENSRNOG00000057904 ENSRNOT00000083952 1 1 1 80 15 4506492 4509490 AAGCAAGAGGAGAAGGTGAC 60 4509533 4509551 CTCTCCGTTTGCATCTCGA 60 Novel Rattus norvegicus 81 AC115420.3 ENSRNOG00000056433 ENSRNOT00000074731 1 1 1 80 4 157457992 157458010 GCTTTCTCAAACTCGTCAC 57 157458053 157460159 ACACAAGTTACTGCCTTCTC 58 Novel Rattus norvegicus 81 AABR07017113.1 ENSRNOG00000053511 ENSRNOT00000090127 1 1 1 71 15 11913327 11913345 CTGCCTCTGCAAGTTTCTC 59 11939492 11939510 TCTGTGATCTTCGGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.2 ENSRNOG00000053967 ENSRNOT00000085994 2 1 1 63 10 102861673 102861691 CTTGTGTCATCACTTGCCA 58 102863824 102863843 CATGGCGGATGATATCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 2 1 1 73 15 12756899 12792302 TCAATGGTACAACAGCTCC 58 12792339 12792357 AAATGTGAAGCTGGAGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001025.1 ENSRNOG00000057928 ENSRNOT00000091983 3 1 1 80 1 34271251 34271271 CAGTTGAGAACTCTGATCCTG 58 34269670 34271210 TGGTGAGAACCAATTGTAGG 58 Novel Rattus norvegicus 81 AABR07062111.2 ENSRNOG00000057585 ENSRNOT00000087809 1 1 1 81 4 161461620 161476137 GAAGGACTGGAAGAAGACTG 58 161461558 161461578 AAATACCATCTCTGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07062111.2 ENSRNOG00000057585 ENSRNOT00000087809 3 1 1 82 4 161461622 161476138 GGAAGGACTGGAAGAAGAC 57 161461558 161461578 AAATACCATCTCTGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07001061.1 ENSRNOG00000055880 ENSRNOT00000089512 2 1 1 80 1 36589369 36589387 ATATGCAGCAAGACACAGG 58 36589428 36683700 GAGATGTCCAATACTGTACAGG 58 Novel Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 1 1 1 60 4 171959412 171960448 GATTCAGTGCAGGTTCCTC 58 171960471 171960490 TGAGTGAGGAACACTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062404.3 ENSRNOG00000055801 ENSRNOT00000091157 2 1 1 105 4 175146847 175150908 GCACTCATACAGAGCACAC 59 175150976 175150995 CTTTAGTGCTCACAGTTGGG 59 Novel Rattus norvegicus 81 AABR07031533.3 ENSRNOG00000058311 ENSRNOT00000091764 1 1 1 84 18 18098810 18104858 CATTTGGGATGTGGGACCT 60 18104906 18104924 CAAGAAGACGGGTCTCCTC 60 Novel Rattus norvegicus 81 AABR07062453.1 ENSRNOG00000051774 ENSRNOT00000085633 1 1 1 111 4 177687314 177688602 CTCTTGCAGTACAACTCCA 57 177687221 177687239 ACAACTAGGCTCTAAGCCA 58 Novel Rattus norvegicus 81 AABR07017701.1 ENSRNOG00000060201 ENSRNOT00000084474 2 1 1 87 15 30219240 30219258 TCATGCAGAGGGACAAGTG 60 30218949 30219189 TGGGCCACATTACATCCAG 60 Novel Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 2 1 1 60 4 181524202 181524895 GCCAGAACCTCTACATCCA 59 181524160 181524179 TCACAGTTCTTGTAGTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031611.1 ENSRNOG00000061426 ENSRNOT00000084525 2 1 1 83 18 22213684 22216703 ACAGTCATATGAGGCCACTG 60 22213620 22213638 CTTGGAACTCCAGCTTTGG 59 Novel Rattus norvegicus 81 AABR07031611.1 ENSRNOG00000061426 ENSRNOT00000084525 3 1 1 84 18 22216746 22216765 TAAACACGTAGCCTGAAGAC 58 22213681 22216700 GTTCAGTGGCCTCATATGAC 59 Novel Rattus norvegicus 81 AABR07017765.1 ENSRNOG00000058922 ENSRNOT00000083279 1 1 1 80 15 30752068 30752092 GATAGCATGGAAGTCATTACTAGAG 59 30752126 30769954 TATCCACTAATTCCTAGGGAGAG 58 Novel Rattus norvegicus 81 AABR07049769.1 ENSRNOG00000055686 ENSRNOT00000085080 2 1 1 80 5 137290719 137290871 TTAATCAGAGGACATCGATCAC 58 137290911 137290930 CTGTGGAACAGGGATTATGC 59 Novel Rattus norvegicus 81 AABR07049783.2 ENSRNOG00000057360 ENSRNOT00000089945 2 1 1 92 5 137659950 137659968 CAAACCTCGTCTACTGGCT 59 137658189 137659896 TGATGCTAACCTGGTAGATGG 59 Novel Rattus norvegicus 81 AABR07031689.1 ENSRNOG00000056190 ENSRNOT00000090460 2 1 1 102 18 26996190 26996741 ATGTATGTGCAGAAGCAGC 59 26996807 26996825 TCAGACACAGTAGGCTGTG 59 Novel Rattus norvegicus 81 AABR07001518.1 ENSRNOG00000055141 ENSRNOT00000081808 3 1 1 80 1 49132537 49133883 AGAAACACAGGATGCACAC 58 49133926 49133945 CCGATTTCTGTGACTTTGCA 59 Novel Rattus norvegicus 81 AC097037.4 ENSRNOG00000059192 ENSRNOT00000090409 3 1 1 81 15 32963080 32963098 GGCTGTCAACAGTTGATGG 59 32963142 32966057 ATTTCAAATCGCTGGACACC 59 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000087580 3 1 2 60 5 143194233 143194252 TCGAGAAGCTAGTTGCTAGG 59 143194659 143194677 GTGTTCTTCAGCAACCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017912.1 ENSRNOG00000052103 ENSRNOT00000091148 3 1 1 96 15 33942784 33944350 ATGCACATGCAGGTAAGGA 59 33942706 33942724 GAATAGATGGTCTCCGGCA 59 Novel Rattus norvegicus 81 AABR07063286.1 ENSRNOG00000058557 ENSRNOT00000078845 3 1 1 80 6 27030469 27030492 CAGTCTGGTCTTGAATTTATGGTC 60 27030529 27032212 GAGCTTTGAATATTGGGAGCG 60 Novel Rattus norvegicus 81 AABR07049962.1 ENSRNOG00000057617 ENSRNOT00000079472 1 1 1 68 5 146346336 146346354 TAGAAGAACCAGGTGCCAG 59 146348781 146348799 TCTTCTCCGACAATGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018087.1 ENSRNOG00000058383 ENSRNOT00000086630 3 1 1 81 15 38738078 38738096 TCCCAATGGTGTTCTCCTG 59 38738140 38751345 TTGTTCAACCTTGGTTGTCC 59 Novel Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 3 1 1 61 6 32307336 32307971 TTATCTGAAGGGTCTTACACTG 57 32307296 32307316 CCTCCTTCAGTACCAATATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063511.1 ENSRNOG00000051741 ENSRNOT00000082269 3 1 1 90 6 32592972 32595646 TATTGAAGGGCTTGGTGTG 58 32592900 32592918 CACAGTGGAATCTCACGAG 58 Novel Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 2 1 1 60 18 50094030 50133445 GTATCCAGAGTCACTCAGAGG 59 50093990 50094011 CCAGATCTGTCAAAGAAGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063565.1 ENSRNOG00000054675 ENSRNOT00000089202 2 1 1 60 6 35451407 35451427 TTGATGAGTGCAGAATGAAGC 59 35451367 35451385 GCTTGGAGGAAGACTTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 3 1 1 61 6 36846742 36855872 AAACAGCACTGTTGACAGG 59 36855896 36855915 TCCATTAAATGTCGCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072602.1 ENSRNOG00000052190 ENSRNOT00000087290 2 1 1 80 18 53252760 53263260 TGTGGACAACCTGTCTGTG 60 53252698 53252717 TCCATAAACACAAGCACAGC 59 Novel Rattus norvegicus 81 AABR07063640.2 ENSRNOG00000056615 ENSRNOT00000079323 1 1 1 69 6 38859622 38859640 ATGAATGTCCCTGGACCTC 59 38858031 38858049 CACGTAGAACAATGGCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063649.3 ENSRNOG00000058529 ENSRNOT00000083922 2 1 1 81 6 39504689 39504707 ACTGAAGCAACTGACCCTC 60 39504750 39515328 TTTGCTGATAAGCTTGTGGTG 60 Novel Rattus norvegicus 81 AABR07032277.1 ENSRNOG00000054651 ENSRNOT00000091806 2 1 1 80 18 59489732 59492163 AGGATCTCCCTCTGTGAGG 60 59492207 59492225 TCCTACGTGTGCATCTTCC 60 Novel Rattus norvegicus 81 AABR07032348.2 ENSRNOG00000059170 ENSRNOT00000082212 3 1 1 82 18 62228180 62229871 GAAGAAAGGATCAAATCAGGCT 59 62229912 62229932 TCTAGAGTCTCTGCTACAGGA 59 Novel Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000084961 1 1 2 89 6 44731305 44731323 TACAGACTCCCACCATGGA 60 44731374 44732611 TCCAGGAGAAAGACCATACAC 59 Novel Rattus norvegicus 81 AABR07032439.1 ENSRNOG00000061537 ENSRNOT00000079627 2 1 1 103 18 65734100 65737140 CACAAGATTGATTCGGATACAC 58 65737202 65737222 TGCTTGATGTGTACTAAGTCG 58 Novel Rattus norvegicus 81 AABR07063767.1 ENSRNOG00000056240 ENSRNOT00000082225 2 1 1 81 6 46950308 46958584 GAGGAAGAGGAAACTGCCT 59 46950245 46950266 ATGGTAAAGCTTTGAGTTCCTC 59 Novel Rattus norvegicus 81 AABR07063804.1 ENSRNOG00000054273 ENSRNOT00000077239 2 1 1 104 6 49617416 49617435 TGCTACCTTTGTCTCCATGG 60 49617502 49617899 GTAGTTCATCTGGCCCTGG 60 Novel Rattus norvegicus 81 AC111292.2 ENSRNOG00000055447 ENSRNOT00000085531 1 1 1 187 3 4007732 4012304 GAACACAGAAGTCCTTGCC 59 4012455 4012473 TCCAACTTCAGGGTGTCTG 59 Novel Rattus norvegicus 81 AABR07002848.2 ENSRNOG00000055681 ENSRNOT00000087482 3 1 1 65 1 86857682 86857700 AAGCTGCCATACTCCTTGG 60 86858398 86858417 TTCTCAGGCATCTGTCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032590.1 ENSRNOG00000051545 ENSRNOT00000083403 1 1 1 62 18 72704228 72704246 AAAGGTGCGACACAAACTC 59 72707562 72707580 TCATCAGCCTTCGATCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC114093.2 ENSRNOG00000054926 ENSRNOT00000079653 1 1 1 127 18 74862368 74862386 TTTCACCGTCATTGTTGCA 59 74862477 74863541 TCTCCTAACTTGCTGGTCG 59 Novel Rattus norvegicus 81 AABR07019155.1 ENSRNOG00000058799 ENSRNOT00000091404 1 1 1 80 15 91490844 91511356 AATGTATTGCCGAGAAAGGA 57 91511397 91511417 TATTAAGAGCACTTCTCCTCG 57 Novel Rattus norvegicus 81 AABR07032806.1 ENSRNOG00000052865 ENSRNOT00000089224 3 1 1 80 18 82756738 82784795 AAGATACAGGAGTTGCTGC 58 82756676 82756694 CAGAACTAGCCGTGTAGAG 57 Novel Rattus norvegicus 81 AABR07032816.1 ENSRNOG00000056823 ENSRNOT00000086996 1 1 1 63 18 84010730 84017955 CATGACAACATACGGCTGG 59 84010685 84010703 GTTGTTTGCAGAGGTGGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07003024.1 ENSRNOG00000053072 ENSRNOT00000082613 2 1 1 80 1 93454484 93454502 AAGACCATCTTGCCCTGAG 59 93397944 93454441 GCTGAGTTTATCCTGCTCTG 59 Novel Rattus norvegicus 81 AABR07064724.3 ENSRNOG00000057000 ENSRNOT00000077355 1 1 1 80 6 91688841 91688859 TTGATGTACGACGACCGTC 60 91684651 91688799 CGAAGTGTGAACCTTCATCTC 59 Novel Rattus norvegicus 81 AABR07019437.7 ENSRNOG00000060778 ENSRNOT00000081262 1 1 1 103 15 105513079 105513097 CATTGGTTAGTGCACCAGC 60 105513164 105518749 GGTACCTTTCACATCCGGT 59 Novel Rattus norvegicus 81 AABR07064727.1 ENSRNOG00000060584 ENSRNOT00000080093 3 1 1 81 6 91803708 91803726 CCCATTGGCTGGTTAACAC 59 91803767 91803912 TCTCTGGTAGATTTAAACCCTGG 60 Novel Rattus norvegicus 81 AABR07033270.1 ENSRNOG00000051555 ENSRNOT00000087049 2 1 1 80 11 14307486 14346453 TCTACAACAAGACAGAGTGAG 57 14346494 14346513 ACCAGTGTACGTTATCATGC 58 Novel Rattus norvegicus 81 AABR07019443.1 ENSRNOG00000061313 ENSRNOT00000086918 1 1 1 60 15 105989067 105989086 GACATATCTTCGCTGAGGTG 58 105986914 105989044 TCTAGCTGGGAGAGTCCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 2 1 1 60 6 97335354 97335372 CATCAGAACCAAGGACCTC 58 97335394 97427415 TCCTTTGCATAGTGAAGAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019811.1 ENSRNOG00000055623 ENSRNOT00000084827 3 1 1 86 13 4230315 4240820 AATGTAACATGGACAGCAGAG 58 4240864 4240886 CCAGTCTATTCCTTCAAGATCAC 59 Novel Rattus norvegicus 81 AABR07064867.2 ENSRNOG00000051551 ENSRNOT00000084980 2 1 1 85 6 98696933 98714076 CACTCATCACGGAAATCCAG 59 98714124 98714142 GCTTCAGTGTTCCCAAGTG 59 Novel Rattus norvegicus 81 AABR07020222.1 ENSRNOG00000056953 ENSRNOT00000086183 2 1 1 80 13 18648426 18650495 CTTCACCCAAAGAAGGAAGC 59 18650538 18650556 ATTCCAGCTAGTGACAGCA 59 Novel Rattus norvegicus 81 AABR07020736.1 ENSRNOG00000052801 ENSRNOT00000079817 3 1 1 64 13 37139730 37139748 AGAGAAACAAGGAGGGCAC 60 37138098 37138119 TTCTGATTCTTCCCACAGAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 1 1 1 66 13 41853431 41853449 GAGGAGGAAGAGGGAAGAG 58 41853478 41860700 CCCTGAACATTAGTCTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000080210 2 1 2 71 1 104287507 104287525 AAGAGAAAGCCCGTCACTC 60 104352006 104352024 GTTTCTAGTCCCTGGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.2 ENSRNOG00000061785 ENSRNOT00000077712 2 1 1 97 6 110909899 110913919 GAAATCTGGTTGAACTACTCAGC 60 110909824 110909842 GGTCAAGACTGGTACAGGG 59 Novel Rattus norvegicus 81 AABR07065190.1 ENSRNOG00000054202 ENSRNOT00000091539 2 1 1 62 6 114631026 114631044 CAGCATATTCCATGCCCTG 59 114599047 114599068 TGTCATGAGTATATTCTGGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 2 1 1 60 6 117418998 117419019 CACTTATTGTCTTGTGTAGCCA 59 117418162 117418977 GTCTTCCCACTTTCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065259.1 ENSRNOG00000059623 ENSRNOT00000083853 1 1 1 121 6 117492697 117495561 AATTCTTAGGTTGGCCTGG 57 117495646 117495664 GTGAAGGATTGATGCAGCT 58 Novel Rattus norvegicus 81 AABR07065259.1 ENSRNOG00000059623 ENSRNOT00000083853 2 1 1 121 6 117492698 117495562 ATTCTTAGGTTGGCCTGGG 59 117495647 117495665 TGTGAAGGATTGATGCAGC 59 Novel Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058,ENSRNOT00000086587 2 2 2 80 6 119137207 119138989 TTTAAGGCATGCGTGAACC 59 119139031 119139051 TTTGAATAACTTACGCAGGCG 60 Novel Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 2 1 1 61 13 69628241 69628259 CTTCAGTCTGCAGACTCCA 59 69628284 69628509 CCCTGAGAGGCAGTAACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021419.1 ENSRNOG00000052817 ENSRNOT00000088938 1 1 1 67 13 71145693 71145711 CAATGTCTACTGTGCCGTG 59 71147599 71147617 GAGTCAAGTCCCTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065343.1 ENSRNOG00000058233 ENSRNOT00000087375 1 1 1 87 6 121991294 121991312 CTTGGAAGCCAATGGTCTG 59 121991363 122000767 CTTCTGATCTGCACCTTGG 58 Novel Rattus norvegicus 81 AABR07021433.1 ENSRNOG00000054898 ENSRNOT00000088145 1 1 1 60 13 71599700 71599718 CTACCTACACTCTGCTGCC 60 71614071 71614089 CTGATGACGTTTCGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065348.2 ENSRNOG00000055490 ENSRNOT00000083586 3 1 1 80 6 123092123 123092477 TACGCAAAGAACAGAAGGGT 60 123092519 123092538 TGAGACAACAAGACCTTCCA 59 Novel Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 1 1 1 64 3 61124873 61124893 CCAGTTCAAACATGTGTAACG 58 61124919 61125089 CCTGGAGTTCTTGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021610.1 ENSRNOG00000060416 ENSRNOT00000088845 1 1 1 80 13 81327798 81327817 TCCTCATTGAAAGCATGACC 58 81327854 81330028 CATATGAGGTAGCAGAATGATACTG 59 Novel Rattus norvegicus 81 AABR07034457.1 ENSRNOG00000057765 ENSRNOT00000081844 3 1 1 76 11 72625588 72625607 CTCACTTAAAGCCTTGGCAG 59 72639207 72639227 GGACTTGTATTTGTAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000078920 3 1 2 97 6 127193066 127199439 GTACAACAGGAGGAAGTTGGA 60 127192989 127193007 GACCCTCACCAGACTTGTC 60 Novel Rattus norvegicus 81 AABR07052608.1 ENSRNOG00000051580 ENSRNOT00000089321 1 1 1 80 3 65954438 65954459 AAACATCACAACAGTCTACTGG 59 65954498 65992065 TCCTAGAATCACCACTAGCTG 59 Novel Rattus norvegicus 81 AABR07034636.1 ENSRNOG00000056037 ENSRNOT00000083950 3 1 1 80 11 81936524 81936668 CAACAGGAAGATCAGAAGGA 57 81936711 81936729 CTCCTTAGTCCTCTTGCAC 57 Novel Rattus norvegicus 81 AABR07052689.1 ENSRNOG00000060563 ENSRNOT00000087442 3 1 1 99 3 69355018 69355037 AGACAAGAGCTTCAACACTC 58 69355096 69359467 GAGTTTCTTTCCTATCCCTCTC 58 Novel Rattus norvegicus 81 AC110403.1 ENSRNOG00000059701 ENSRNOT00000088915 3 1 1 111 3 72845452 72845472 TCAGAGATCCAAGGTTCTGTG 60 72844584 72844605 ACTTTAGACACAGAAGTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065566.1 ENSRNOG00000052627 ENSRNOT00000080743 1 1 1 113 6 134718927 134718945 CCATGAGTCTCAATGTCCC 58 134719022 134719225 GGTTGGTTCCCTTATCCAG 58 Novel Rattus norvegicus 81 AABR07035005.1 ENSRNOG00000058796 ENSRNOT00000081048 2 1 1 99 12 3134354 3134729 TCCTATGGAACTTGATGGGT 58 3134791 3134809 CTTACCTCCTCCCTCTCCT 59 Novel Rattus norvegicus 81 AABR07004232.2 ENSRNOG00000054097 ENSRNOT00000085407 2 1 1 81 1 131688253 131688273 AGCCAGTTCTCATCATCTGAG 60 131688316 131688662 TACAACAGCCCTCAACTGG 60 Novel Rattus norvegicus 81 AABR07022056.1 ENSRNOG00000056806 ENSRNOT00000078696 3 1 1 81 13 104806682 104806700 TCTGAGGATCACAGAGCAG 59 104806745 104806763 TGTCTGGACTTGTGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 3 1 1 99 6 141112439 141112566 AGATGTCCAGTGTGAAGTACAG 60 141112361 141112379 GAAAGTGAATCCCGAGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AC134037.1 ENSRNOG00000057992 ENSRNOT00000086639 2 1 1 80 13 107643160 107643178 GGACTCGGATCTGGATCAG 59 107643222 107643593 ATCCGGCACATACTTGGAC 60 Novel Rattus norvegicus 81 AC114460.2 ENSRNOG00000058477 ENSRNOT00000078130 3 1 1 72 1 142134735 142134753 AGTTGGATGAACCTCGCTC 60 142134505 142134525 GTGTAGTCTGACACAAATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053435.1 ENSRNOG00000056640 ENSRNOT00000079022 3 1 1 82 3 106923212 106923339 AGGCTTATGAATCAAGATTGGC 59 106923151 106923174 CTAGTTTCGAATCTTCAGTTGAGG 60 Novel Rattus norvegicus 81 AABR07072272.2 ENSRNOG00000054368 ENSRNOT00000090591 1 1 1 133 12 13468582 13470915 ACTCCATGGAACCCTTCTG 59 13471012 13471030 TACTTACCAGGCATCAGCG 60 Novel Rattus norvegicus 81 AABR07053479.1 ENSRNOG00000058690 ENSRNOT00000082123 2 1 1 80 3 109331595 109331617 TCCTTTCCCTCTTCTAATTGGTC 60 109331654 109335472 TGGACACGTTCATAGATCAGAG 60 Novel Rattus norvegicus 81 AABR07024724.1 ENSRNOG00000053759 ENSRNOT00000087993 2 1 1 80 16 12713528 12715060 GCTGTTTGTGAGGTATGCA 59 12713466 12713484 TCCAAGAAGCTACAGAGGG 58 Novel Rattus norvegicus 81 AABR07053681.2 ENSRNOG00000056066 ENSRNOT00000088682 1 1 1 80 3 120114666 120116086 TCAGTAATGAGGCTGGCAC 60 120116129 120116148 CTATACCTGTAGGCACTGGG 59 Novel Rattus norvegicus 81 AABR07004761.1 ENSRNOG00000054312 ENSRNOT00000088739 1 1 1 127 1 154822725 154829901 AACGAGTTTGCAGCTTACG 59 154829990 154830010 TGCAAAGTACAGCACTTACAC 59 Novel Rattus norvegicus 81 AABR07024814.1 ENSRNOG00000056192 ENSRNOT00000077288 3 1 1 64 16 18022524 18022543 ATCACCTAGGAATCAGCCAG 59 18021887 18021906 ACCAATGACGTATTCATGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 3 1 1 85 16 18597477 18598108 ATTCCATGATACCAGCAGC 58 18601917 18601935 ACTTTGCCTTCTCCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024856.1 ENSRNOG00000054993 ENSRNOT00000089499 1 1 1 80 16 19400296 19409329 TGCAAACAAGACCTCAAACTC 59 19400236 19400255 AACGAGTCAGCCTAATGGTC 60 Novel Rattus norvegicus 81 AABR07053782.1 ENSRNOG00000056616 ENSRNOT00000081821 3 1 1 84 3 125775925 125775946 CCCTGAAGATTCACAGAAATGG 59 125775991 125777213 TTTCTGCTGAGACATTGGC 59 Novel Rattus norvegicus 81 AABR07005032.1 ENSRNOG00000057739 ENSRNOT00000087078 1 1 1 80 1 176622005 176622817 AACTGCTCTGGAGATATACCA 58 176622859 176622877 GTACGGAATAGCTGCAAGG 58 Novel Rattus norvegicus 81 AABR07067006.1 ENSRNOG00000059681 ENSRNOT00000078230 3 1 1 123 9 26061336 26061452 AGAGCACCACAGTTAAAGG 57 26061539 26061557 TTCACAGACATCCATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053854.1 ENSRNOG00000059080 ENSRNOT00000078079 3 1 1 100 3 131100709 131105617 CACTAAAGATAAAGCAGCTGAG 57 131105678 131105696 GGATTTGTTTCACGAGAGC 57 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000085881 2 1 2 94 16 31172100 31172202 AAGGATCAGATCAGGTTCCTG 59 31166565 31166583 GATGGAGACACAGCTCCTC 60 Novel Rattus norvegicus 81 AABR07025387.1 ENSRNOG00000052518 ENSRNOT00000086642 1 1 1 80 16 36374682 36374703 CAAGTGTTTAACAGATGCTTCG 59 36374744 36375211 ATCTCCGTTAGGGTTGCTG 60 Novel Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 2 1 1 71 12 28024992 28025308 GGGAATACTGAATGGAAGAATCC 59 28024943 28024962 TTAATGAGCCCAATCAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 1 2 3 63 3 142293161 142297265 GATCATGGATGTACCTTCCAG 58 142293118 142293136 GAATGCAGGGTCTCCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067405.1 ENSRNOG00000055425 ENSRNOT00000089959 2 1 1 80 9 43503763 43503929 ACACAGTAGATATAGAGGATACGC 59 43503964 43503986 CTCTACATCTATGGTGTACTCCT 59 Novel Rattus norvegicus 81 AABR07067469.1 ENSRNOG00000052973 ENSRNOT00000089604 3 1 1 83 9 47937263 47938284 AGCTCAAGCAATGATCCAG 58 47937198 47937217 TCTTGTCGTCTTTGCTTCTG 59 Novel Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 3 1 1 65 3 155679390 155687588 GAACCAAGGGTTTCGAAGC 60 155679343 155679361 GTCATAGACATGGCACTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067507.1 ENSRNOG00000055791 ENSRNOT00000081317 1 1 1 60 9 50095273 50095292 CATGATCATGGGACTCTGTG 58 50094681 50095253 CAGGTTAGACAATCCATATCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07067507.2 ENSRNOG00000055904 ENSRNOT00000088980 3 1 1 82 9 50193519 50193541 GACAACTAACAAGATAGTGTGGG 59 50190903 50193479 GGTTGAATCTGATGTGACCTG 59 Novel Rattus norvegicus 81 AABR07036406.1 ENSRNOG00000054037 ENSRNOT00000078840 1 1 1 80 12 42177832 42178195 CACTGGTTCAGAAGAGGCA 60 42178239 42178257 CCCTCTGGATCCTTGAACC 60 Novel Rattus norvegicus 81 AABR07036406.1 ENSRNOG00000054037 ENSRNOT00000078840 2 1 1 80 12 42177831 42178194 TCACTGGTTCAGAAGAGGC 59 42178238 42178256 CCTCTGGATCCTTGAACCA 59 Novel Rattus norvegicus 81 AABR07026048.1 ENSRNOG00000058880 ENSRNOT00000083953 1 1 1 84 16 61217792 61217810 GGACTTCATGCATGCAAGG 60 61217857 61218168 TCGAGTGGCTTTATTTGGTG 59 Novel Rattus norvegicus 81 AABR07036407.1 ENSRNOG00000053908 ENSRNOT00000079592 3 1 1 91 12 42217410 42217428 CTGTCTTTCCCACCATCCT 59 42217047 42217065 CCTCATCTTCTCAGGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054490.1 ENSRNOG00000061347 ENSRNOT00000090335 1 1 1 80 3 156589963 156615278 TCACTGAGAAGCACAGTCTG 60 156589902 156589920 GTTTCAAGGCTGCCATCAC 60 Novel Rattus norvegicus 81 AABR07054512.1 ENSRNOG00000051934 ENSRNOT00000083405 2 1 1 80 3 158692514 158692748 ATTATCCTCGAAACCGCAG 58 158692790 158692810 ACAGAAAGAACTGAAGCTGAC 59 Novel Rattus norvegicus 81 AABR07067775.1 ENSRNOG00000056531 ENSRNOT00000078499 1 1 1 80 9 63406272 63406291 AGAAACCACTCTTCTGTGTC 58 63406331 63408032 ATAATCTAACACCTGGAGTGTG 58 Novel Rattus norvegicus 81 AABR07067775.1 ENSRNOG00000056531 ENSRNOT00000078499 3 1 1 81 9 63406271 63406291 GAGAAACCACTCTTCTGTGTC 59 63406331 63408032 ATAATCTAACACCTGGAGTGTG 58 Novel Rattus norvegicus 81 AABR07067791.1 ENSRNOG00000055231 ENSRNOT00000082250 3 1 1 89 9 64218409 64222774 TTGTACTGGAGTACATTGTACG 58 64218341 64218359 CTTTCAGGAGACTGACGAC 58 Novel Rattus norvegicus 81 AABR07026241.1 ENSRNOG00000059687 ENSRNOT00000083516 1 1 1 63 16 69319837 69319855 GTCCCTACCTGGAACAGTG 59 69320833 69320851 GATGAAGAGCTGTGTCGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AC097575.2 ENSRNOG00000060790 ENSRNOT00000079447 2 1 1 61 12 46859494 46859513 ATTCACCAGTACCTGCAGAG 60 46858336 46858354 GAGATAGTTCCCGGGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054593.1 ENSRNOG00000057352 ENSRNOT00000078986 1 1 1 89 3 162690302 162690320 GAGAAGCCAGAGGGAATGG 60 162688651 162690251 CTTTAAGATCAAGGCAGGCAG 59 Novel Rattus norvegicus 81 AABR07036542.1 ENSRNOG00000058601 ENSRNOT00000078437 2 1 1 102 12 47842954 47842975 GGATAAACCAAGGCTCAAAGAG 59 47847000 47847018 ACTAGGATCACAGAGGCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 2 1 1 68 9 69756773 69756792 GATGGGATTGTTTGAGAGCC 59 69756823 69770255 AATCTGCATAAGCAGCGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933,ENSRNOT00000087244 2 2 2 60 9 71398079 71398097 TTCTCCATGTTTGACAGCT 57 71388835 71388853 ACTATCACATGGTTCTGGC 57 Novel DesignNoJunction Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 2 1 1 60 X 5789763 5824572 CTTTCCATGCTTCAACAAGG 58 5789722 5789740 ATTTGCTCCATTTGCTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054818.1 ENSRNOG00000058392 ENSRNOT00000085442 3 1 1 80 3 170477986 170479104 ATTGGAGAAGTACACTCAACC 58 170479146 170479164 GGCTGTTTCTTTCTTTGGC 58 Novel Rattus norvegicus 81 AABR07054822.1 ENSRNOG00000052166 ENSRNOT00000087924 3 1 1 82 3 170773587 170773605 ACGCTTCTCCTCGTATCTG 59 170772522 170773541 CATCCTGCATCCTCATCCT 59 Novel Rattus norvegicus 81 AABR07068085.2 ENSRNOG00000058000 ENSRNOT00000082329 2 1 1 121 9 82791525 82791544 AGAAGAGTGGGATGGAAGAG 59 82785595 82785613 TTGGTTGCCTCAAATCGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037897.1 ENSRNOG00000057833 ENSRNOT00000083859 2 1 1 81 X 35164937 35164957 GGAAAGACTGTATTTCTGCTG 57 35162514 35164895 CTGACATTTCTATTTGCGGG 57 Novel Rattus norvegicus 81 AABR07068198.2 ENSRNOG00000054702 ENSRNOT00000081485 2 1 1 96 9 89928370 89929096 TTGAAGACTTTGCTGCGAG 59 89929156 89929174 GCTCTGTAACTGCCAAGTG 59 Novel Rattus norvegicus 81 AABR07068203.1 ENSRNOG00000054773 ENSRNOT00000083335 1 1 1 84 9 90678601 90678619 TACATGGTCAGTGCATGGG 60 90606940 90678555 AGACTCCATTCTGGGTTTCTG 60 Novel Rattus norvegicus 81 AC127756.1 ENSRNOG00000051474 ENSRNOT00000092096 2 1 1 85 16 82183571 82183589 CTGAGATTCAACGCCTCTG 58 82179820 82183525 GATTCAGACCTAGAAACCTGTG 59 Novel Rattus norvegicus 81 AABR07006542.2 ENSRNOG00000058035 ENSRNOT00000086926 3 1 1 100 1 239313386 239318843 CTGAAATGTGAGGGCTGTC 59 239313304 239313323 TGCTCTGATGACTCTTTGTC 58 Novel Rattus norvegicus 81 AC098189.1 ENSRNOG00000054082 ENSRNOT00000091354 2 1 1 85 9 94269467 94269485 GCACATTTGTGCAGGAGAG 60 94269534 94270181 AAGGTACAGAACTTGGCCT 59 Novel Rattus norvegicus 81 AABR07006649.1 ENSRNOG00000058592 ENSRNOT00000086142 2 1 1 80 1 244211726 244211747 ATTCAAGATGGAAAGTGGACTG 59 244209305 244211685 CACATTCCCGTTAACCTGG 59 Novel Rattus norvegicus 81 AC117971.1 ENSRNOG00000057391 ENSRNOT00000090247 1 1 1 83 7 19843488 19843508 GTGGGATTCTTCATCATTTGC 58 19843238 19843258 GGTTACATTTCCAAGGTTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006657.1 ENSRNOG00000053314 ENSRNOT00000081785 1 1 1 100 1 245097192 245099421 TGATAGAGCTGACCTGGGA 59 245097110 245097130 TCTTGGTCCAGTCTTGAACTC 60 Novel Rattus norvegicus 81 AABR07040249.1 ENSRNOG00000057035 ENSRNOT00000086634 1 1 1 82 X 96396416 96396434 CTGTGACAAGTTTGCAGGA 58 96396141 96396159 TTCCCAGAAAGAGTTGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026912.2 ENSRNOG00000060172 ENSRNOT00000092050 2 1 1 113 17 4567804 4568080 AAAGATACAACGAAGCGAGAG 59 4568152 4568173 ACTCACCTTCATCTTCTTTCTG 58 Novel Rattus norvegicus 81 AABR07026924.1 ENSRNOG00000059954 ENSRNOT00000082088 2 1 1 80 17 5016820 5016939 TCCCTTATATGGCAACCTACAC 60 5016979 5016998 GATGTCTTTGGAGGAAGGCT 60 Novel Rattus norvegicus 81 AABR07040267.1 ENSRNOG00000051827 ENSRNOT00000088177 1 1 1 80 X 96745702 96754807 CCTACCAGCTTTGTATATCATCTC 59 96745645 96745665 TACTGGGCATTGGTATAAGCT 59 Novel Rattus norvegicus 81 AABR07026936.3 ENSRNOG00000054793 ENSRNOT00000086021 1 1 1 74 17 5656256 5656274 GACCCTCCAACCAGAAGTC 60 5660634 5660652 GTGACATCTCCTGGGTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040481.1 ENSRNOG00000052994 ENSRNOT00000088056 1 1 1 80 X 102051445 102055768 ACAAACTAAAGGAAGAGGCCA 60 102055807 102055828 GGCACAGATGTCCATTTAAGAG 60 Novel Rattus norvegicus 81 AABR07026984.1 ENSRNOG00000052412 ENSRNOT00000081442 3 1 1 80 17 8438909 8440242 ACAGTCTTTGGAGAAGGTGAG 60 8440281 8440302 TGTAGACCATCGTTGAGATAGC 60 Novel Rattus norvegicus 81 AABR07042654.2 ENSRNOG00000060296 ENSRNOT00000077455 2 1 1 80 19 1593820 1596793 GCAGATGAAGACTTGCTCC 59 1601293 1601315 CCTGCTGTAGCTATTAGAAACTC 59 Novel Rattus norvegicus 81 AABR07027030.1 ENSRNOG00000055200 ENSRNOT00000079154 3 1 1 80 17 11661160 11670305 AAACAAGCAAGCACCACTG 60 11661098 11661118 CAGCTCATCTTTGTACTAGCC 59 Novel Rattus norvegicus 81 AABR07042699.1 ENSRNOG00000060999 ENSRNOT00000077644 3 1 1 105 19 4462813 4483642 ACTATGAGATGTTGCCTGCT 59 4462727 4462745 CATTCATGAGCAGCTCTGC 59 Novel Rattus norvegicus 81 AABR07006888.2 ENSRNOG00000061256 ENSRNOT00000090950 1 1 1 80 1 262854180 262854199 GGAAATGTTCTTGAGGCTGG 59 262851693 262854137 GCTCCTTCACTTTGCTTCC 59 Novel Rattus norvegicus 81 AABR07042781.1 ENSRNOG00000055209 ENSRNOT00000079514 2 1 1 80 19 8354970 8354988 AAGGGAAACTCCATGTGAG 57 8355031 8356716 TAGTGTTTGCACCTTCTCTG 58 Novel Rattus norvegicus 81 AABR07006894.1 ENSRNOG00000051771 ENSRNOT00000091124 1 1 1 123 1 263013805 263013823 CTATGACATCCCTCGGGTC 59 263012465 263013719 TTCCGGTATCTTGTGCTGAG 60 Novel Rattus norvegicus 81 AABR07056680.1 ENSRNOG00000054516 ENSRNOT00000078509 2 1 1 131 7 35634686 35739098 GGAAGTCAGAGGACTCTGC 60 35634573 35634593 CCACCCTTTGAATTCTCTGTC 59 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081379 1 1 2 81 19 11671485 11786402 GACCGAAGTGTGGTAAGCT 60 11786447 11786465 ACCAGCCATCATGACTGAC 60 Novel Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 1 1 1 60 7 38667423 38667441 ATAGTCCGTTGCTATCCCT 58 38667465 38679332 AAGCTGGTATTGTTGCGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069235.1 ENSRNOG00000056348 ENSRNOT00000090990 3 1 1 89 8 14192099 14192117 AAGTTGTTCTCATGCCAGG 58 14200877 14200898 GCGTTGTTCATATCTGTTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056953.1 ENSRNOG00000061159 ENSRNOT00000078831 3 1 1 80 7 48553916 48553935 ACTCCAGGATGTCATCTACG 59 48553975 48644729 GTTAGAGATTCGATGTCCTGAG 58 Novel Rattus norvegicus 81 AABR07027390.2 ENSRNOG00000056672 ENSRNOT00000092082 2 1 1 76 17 27842348 27842369 CACAGTGTTTCATAGAAACCTG 58 27849428 27849446 CATCTTCCTCCTTCCATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.2 ENSRNOG00000054220 ENSRNOT00000089190 3 1 1 81 17 28008575 28008704 ATAGAAACACCCTCAGGTCAG 59 28008514 28008533 CCTTTCTGTCTGGGAAAGGA 59 Novel Rattus norvegicus 81 AABR07057233.2 ENSRNOG00000057241 ENSRNOT00000089812 3 1 1 81 7 62202026 62202960 GGTAGATGAAGTCTCAACTTGTC 59 62203000 62203019 TGGATACTTCCTCAAGGCTG 59 Novel Rattus norvegicus 81 AABR07043354.1 ENSRNOG00000061623 ENSRNOT00000087479 3 1 1 80 19 27668453 27668471 CATCATCAAGATGCTGCCT 58 27660628 27668412 GGTACTTCTCCAAGTCATTGTC 59 Novel Rattus norvegicus 81 AABR07027478.2 ENSRNOG00000052021 ENSRNOT00000087921 2 1 1 81 17 33081034 33081053 TGAAGACAACCGATGGAGAC 60 33081097 33081713 GTTTCCATGGAGCCTTGTC 59 Novel Rattus norvegicus 81 AABR07043389.1 ENSRNOG00000052109 ENSRNOT00000074264 1 1 1 67 19 27984656 27984674 CCTGATGACCAACATCCTG 58 27984487 27984505 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027501.1 ENSRNOG00000055736 ENSRNOT00000090118 3 1 1 80 17 34542359 34546157 TTTGTCAACAGAAAGGCTAGC 59 34542299 34542318 TGTTCTTCAGAATGGGTCCT 59 Novel Rattus norvegicus 81 AABR07057382.1 ENSRNOG00000052935 ENSRNOT00000080127 2 1 1 187 7 68891893 68891914 GTGACGTATGTGTATGAGACAC 59 68892062 68926517 AATCTTTCTCCCGGGTGTG 60 Novel Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 3 1 1 61 7 69338622 69339911 AGACAGAAGAGTTGTTTGCA 58 69339934 69339953 CAGACTTCTCATGTTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043454.1 ENSRNOG00000055759 ENSRNOT00000083349 1 1 1 82 19 28706876 28707930 CATGTGGAATGTGGAAGGC 59 28707976 28707994 CTCCTCTTCCTGATTGGCC 60 Novel Rattus norvegicus 81 AABR07057415.2 ENSRNOG00000056418 ENSRNOT00000087453 1 1 1 89 7 70151933 70152621 CTCCTTCACAGAGCCAGTC 60 70151862 70151880 AATCCAAATGGCAGTTGGC 59 Novel Rattus norvegicus 81 AABR07057415.1 ENSRNOG00000051512 ENSRNOT00000077075 2 1 1 109 7 70167587 70167606 AAGATGATGTAAGGACCCGG 59 70167285 70167515 TCCAACAGGCTGAAGTAGC 60 Novel Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 2 1 1 73 8 40036751 40036769 GTCTTACGACGGAACTGTC 58 40034221 40036714 GTTGATTCACCGCAAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007065.1 ENSRNOG00000061842 ENSRNOT00000081741 1 1 1 81 1 279109574 279110379 CCATCATCAACAGAAGGCA 58 279109511 279109529 CCTCAGGAGACATTTGCAC 59 Novel Rattus norvegicus 81 AABR07057611.1 ENSRNOG00000058911 ENSRNOT00000082925 1 1 1 80 7 80165124 80165142 GCCTGAGAACCTTCTTGTG 59 80164747 80165081 CCTCTGCATATTTCCCTTGG 58 Novel Rattus norvegicus 81 AABR07070078.1 ENSRNOG00000060536 ENSRNOT00000081870 3 1 1 86 8 48088891 48093653 AGGCATGACATTAGTGGAGAG 60 48088825 48088843 ATTGCGTTCATCTGGTTGG 59 Novel Rattus norvegicus 81 AABR07043822.1 ENSRNOG00000051743 ENSRNOT00000081658 2 1 1 81 19 41654474 41655387 CTTCTTCAGTTCATGGATTAGC 57 41655427 41655447 CAATAATGTGCACACTGTACC 58 Novel Rattus norvegicus 81 AABR07029217.4 ENSRNOG00000056131 ENSRNOT00000078756 2 1 1 80 10 15078038 15085971 AGGACAAAGAGAATGCTGAC 58 15077977 15077997 TACTTCTGTTGCTCTAGAACC 57 Novel Rattus norvegicus 81 AABR07070129.1 ENSRNOG00000051579 ENSRNOT00000081874 2 1 1 87 8 53826162 53826180 GATTTGGAACAGAGCAGCT 58 53825895 53826112 CTTGCCAACCCAGTATAAGG 58 Novel Rattus norvegicus 81 AABR07070161.2 ENSRNOG00000052054 ENSRNOT00000083870 3 1 1 109 8 55535806 55536357 ACTAATGCTGGTGACGTCC 60 55535715 55535733 TGTAAGATGGGCAGGTGAG 59 Novel Rattus norvegicus 81 AABR07029563.1 ENSRNOG00000052371 ENSRNOT00000090220 1 1 1 80 10 34709798 34711532 ATGGGAAGGACCTATGCTG 59 34711576 34711594 AAGGTCACTAATGGCACCA 59 Novel Rattus norvegicus 81 AABR07070198.1 ENSRNOG00000058419 ENSRNOT00000090752 2 1 1 79 8 57462872 57462894 GGACAAAGGACCCTTTATTTGAG 60 57459889 57459912 GTGCTATCTATGAAGAATCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058410.2 ENSRNOG00000053874 ENSRNOT00000080383 3 1 1 80 7 114895893 114910216 TTGAGCAACAGAAGGGAGAG 60 114895832 114895852 GAATGTATGAGAACTGCGTCC 59 Novel Rattus norvegicus 81 AABR07058410.3 ENSRNOG00000058353 ENSRNOT00000087512 1 1 1 80 7 114928202 114930932 CAGGAATAGGAAGGTAGGGA 58 114928141 114928162 CAGGAGATCATTTCCATCTAGC 59 Novel Rattus norvegicus 81 AABR07070272.1 ENSRNOG00000060681 ENSRNOT00000087466 3 1 1 84 8 62991844 62991862 TAGGTCCGTGAAGATCTGG 58 62991909 62992734 AGTAACCTTTCTCTGCACTC 57 Novel Rattus norvegicus 81 AC095267.2 ENSRNOG00000055050 ENSRNOT00000077315 3 1 1 80 X 156235687 156235705 TGGAGAAGCTACCAAGTGG 59 156235958 156235976 TCAGGAAAGGCACCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042454.2 ENSRNOG00000052233 ENSRNOT00000079720 2 1 1 107 X 157347239 157347257 ACAAGGTCTGAAGTGCTCC 60 157347328 157353349 CACTGATGAAGGCAAGCTG 59 Novel Rattus norvegicus 81 AABR07070341.2 ENSRNOG00000053265 ENSRNOT00000088695 1 1 1 140 8 66357978 66358107 TTGTCCCAGGATGACAGTG 59 66357856 66357874 CCATGGAGCTCAGAGAAGG 60 Novel Rattus norvegicus 81 AABR07058647.1 ENSRNOG00000054074 ENSRNOT00000081985 3 1 1 82 7 129595025 129595044 TCTGAAGAGACCTGTTGGAG 59 129587201 129594980 TAGCACAGGTGCTTGTCTC 60 Novel Rattus norvegicus 81 AABR07044418.2 ENSRNOG00000060090 ENSRNOT00000084566 3 1 1 82 20 5314714 5314732 CTCTTCAGGGATCTCTGGG 59 5314545 5314563 TCCTGATTTCCCAGACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC141521.2 ENSRNOG00000053147 ENSRNOT00000091051 3 1 1 87 20 5783100 5783119 CTGATCCTCCTGAAGTACCG 59 5782923 5783056 GAACCACATCTATGATCTTCTTCAC 60 Novel Rattus norvegicus 81 AABR07059009.2 ENSRNOG00000058122 ENSRNOT00000082708 1 1 1 80 4 1093177 1093196 TGCAGAGCTTTGAAAGTGAG 59 1093239 1109975 TAGAGGGAAGACCTGGGAG 59 Novel Rattus norvegicus 81 AC132760.1 ENSRNOG00000059372 ENSRNOT00000090074 3 1 1 90 20 7655029 7655047 ATAAGACCCACCACGAACC 59 7655096 7655790 TTTCCGATGACTAGAATCAGTAGG 60 Novel Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 3 1 1 64 2 32633017 32636211 AAAGTTCTGCTGGTAAGATCTG 59 32632974 32632993 ACACTCAGGATTCTACAACC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 1 2 2 80 4 5722468 5723891 CTACCAAGTGGCCTATACGA 59 5722407 5722427 ACTTAAAGACCACCTGTTCCA 59 Novel Rattus norvegicus 81 AABR07070704.1 ENSRNOG00000058223 ENSRNOT00000088217 2 1 1 94 8 80923440 80923458 GAACTCAAGCATCAGCTGG 59 80923515 80924896 CACTCTGTTCCTTTCATGGC 59 Novel Rattus norvegicus 81 AABR07028258.1 ENSRNOG00000058781 ENSRNOT00000091239 3 1 1 86 17 62657993 62658012 AAGTTTAGAACCCAGTCACG 58 62657536 62657947 CAGAAAGTCATGTTTCGATCTC 58 Novel Rattus norvegicus 81 AC141961.1 ENSRNOG00000052083 ENSRNOT00000082004 1 1 1 94 20 14756042 14768816 GATGGAAGTTGTGACAGGG 58 14755966 14755985 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AC112030.1 ENSRNOG00000051486 ENSRNOT00000081349 1 1 1 67 4 26533360 26548462 TCTCTACAAACACAGAGAAGAC 58 26548490 26548508 GTTTACTTCGATGCACCCT 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044752.1 ENSRNOG00000055901 ENSRNOT00000089930 3 1 1 63 20 19555187 19555205 CCTGATTCCAGAATGGCTG 58 19554431 19554449 AAACTGGAGGTCAGAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC107447.1 ENSRNOG00000058221 ENSRNOT00000083635 1 1 1 60 4 31490629 31490648 GAGACATCTTGTGTCCTTCG 58 31489694 31489713 TGTGATAAGGTTGTTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070834.1 ENSRNOG00000055417 ENSRNOT00000078167 2 1 1 80 8 86215807 86216327 TACAGACAAGAGCTGAGGC 59 86216371 86216389 TTGTGATGAGCAGCAAAGC 60 Novel Rattus norvegicus 81 AABR07070872.1 ENSRNOG00000061781 ENSRNOT00000090757 2 1 1 80 8 89173278 89173297 AGTGAAACCAGGATTTGCTG 59 89173339 89174172 TCTTCAACTCACATGGTCCA 59 Novel Rattus norvegicus 81 AABR07028535.1 ENSRNOG00000052494 ENSRNOT00000090433 3 1 1 80 17 74010070 74014011 TGAAGAACAGGAAAGGCTC 57 74014052 74014073 TTGGTTAGCTCTAAAGATCCAC 58 Novel Rattus norvegicus 81 AC141220.1 ENSRNOG00000059795 ENSRNOT00000083975 2 1 1 61 17 76305660 76305678 CATCACTGCCTTCTCACAG 58 76306271 76306289 AAGTTCCAGAGTACAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028749.1 ENSRNOG00000056802 ENSRNOT00000083328 1 1 1 88 17 84664912 84665809 TCCAAGGAGTCAAGCACTC 59 84665861 84665879 TTTGTGAAGTGTTGGCTCC 59 Novel Rattus norvegicus 81 AC116288.1 ENSRNOG00000060822 ENSRNOT00000084692 2 1 1 83 4 48932468 48932489 TGAATGTGAAGTCTGGATTCAC 59 48928943 48932430 GGTGATTTAATCTGTATCACCTCTC 59 Novel Rattus norvegicus 81 AABR07071335.1 ENSRNOG00000056720 ENSRNOT00000088673 2 1 1 60 8 110111696 110111714 CTTCAGCTTAGCTTGTGCT 58 110112370 110112389 TTCTGTGTCTCAGTCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC128293.1 ENSRNOG00000061434 ENSRNOT00000085443 1 1 1 107 4 57779335 57781192 TGGACATTCTGGAAGGGAG 59 57781263 57781281 AAACTGTTGCAACTTGCCA 59 Novel Rattus norvegicus 81 AABR07071392.1 ENSRNOG00000058516 ENSRNOT00000077214 1 1 1 81 8 113631634 113666798 GGACTTAAGTACTCAACTCCC 58 113631573 113631591 GAGGTCACTTCACCATTGG 58 Novel Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000081763,ENSRNOT00000082061 2 2 2 60 8 114037804 114037824 ACCAGATTTAGCAGAGTAGCC 60 114037764 114037783 CCGAGAAAGGAAACCAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000081763,ENSRNOT00000082061 3 2 2 60 8 114038150 114038168 ATCTGTTGTGCGATTGGAG 58 114038108 114038126 TTAACCATGCCTCTCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045318.1 ENSRNOG00000051397 ENSRNOT00000082979 1 1 1 63 20 42684375 42687058 CCGACCTTAGTAAATTTCTGGA 58 42684333 42684354 GCCCTCTACTTCTCAAATAGAC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07073455.1 ENSRNOG00000055688 ENSRNOT00000089206 3 1 1 80 8 120894523 120894543 CTGGAAAGCTTTATGGTCCTC 59 120894582 120897653 ACTTCACTCTTCCAATGATGTC 59 Novel Rattus norvegicus 81 AABR07045400.1 ENSRNOG00000054936 ENSRNOT00000091453 1 1 1 91 20 46316870 46318615 CTTTGTAAAGGTCAAGCCGA 59 46318667 46318687 GGTGCATTAACTCGTCTAGTC 59 Novel Rattus norvegicus 81 AC098284.1 ENSRNOG00000059808 ENSRNOT00000088947 3 1 1 80 8 121095859 121124378 AAGAGTACAGTTCTCCCTCAG 59 121095799 121095817 GAATATTCCACGGTGAGCA 58 Novel Rattus norvegicus 81 AABR07071551.1 ENSRNOG00000056838 ENSRNOT00000085283 1 1 1 80 8 121662940 121662960 GAACACATTCCAGGGTTTGAC 60 121659182 121662898 TTCTGTTCTTCCCTGCCAG 60 Novel Rattus norvegicus 81 AABR07071567.1 ENSRNOG00000053523 ENSRNOT00000083235 1 1 1 64 8 122328072 122328090 GGAGAGGAACACAAGTCTG 58 122326419 122328048 CCTAGAATCAGTGATCATCATGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07043877.2 ENSRNOG00000054148 ENSRNOT00000083375 2 1 1 85 19 45537564 45537583 CAAGTCTTTCCAGTTCTGGC 59 45537631 45563406 TTCCCATTTGATTTGCCGC 60 Novel Rattus norvegicus 81 AABR07071739.1 ENSRNOG00000051462 ENSRNOT00000086617 3 1 1 80 8 128560280 128560299 ATGACTGGTACATTCCCTGG 59 128560341 128561281 TCTGTCCATCGTTCTCAACC 60 Novel Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 1 1 1 72 8 128962606 128964256 ATCACTGTCCATGAGCAGG 60 128964289 128964310 ACAGGATGCTGATTTATGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008977.1 ENSRNOG00000056592 ENSRNOT00000082096 2 1 1 80 2 82026716 82026737 ATGGTGCTTGAAAGTCTTAGGA 60 82025399 82026677 ACTGCAACATCTTGTGAACTG 60 Novel Rattus norvegicus 81 AABR07058786.1 ENSRNOG00000054027 ENSRNOT00000077802 3 1 1 100 7 137482049 137482067 CTCTCCTGGCATCTTTAGG 57 137480351 137481985 ATAAATGCACCTCCAAGGG 58 Novel Rattus norvegicus 81 AABR07058789.1 ENSRNOG00000057856 ENSRNOT00000078569 2 1 1 99 7 137590652 137593039 CAGTTCCTCATGTTAAGAATGG 57 137590574 137590593 GAAACCATCAGTCAACACTG 57 Novel Rattus norvegicus 81 AABR07071821.1 ENSRNOG00000053879 ENSRNOT00000088147 2 1 1 84 8 133018972 133018991 TATCATCCTGCCAGAGATGC 60 133007858 133018925 AATCTGGTACCTCACAGGC 59 Novel Rattus norvegicus 81 AABR07009161.1 ENSRNOG00000056029 ENSRNOT00000079699 1 1 1 80 2 87896705 87898081 ACTTCTCCATTGGTGTTGC 58 87896643 87896661 GAACAATAGCTCCTGGTCC 58 Novel Rattus norvegicus 81 AABR07009260.1 ENSRNOG00000053978 ENSRNOT00000086047 1 1 1 80 2 90606130 90606642 GAAGAATGATTTGGAGATTGGGAG 60 90606678 90606699 GAGAAGTACAGCTGTAAACAGC 59 Novel Rattus norvegicus 81 AABR07007088.1 ENSRNOG00000052677 ENSRNOT00000088126 1 1 1 80 1 280347059 280347238 GCCCGTAAGAATACTCACCT 59 280346998 280347018 GACAGTCTAACAGCAAATGGG 59 Novel Rattus norvegicus 81 AABR07009986.1 ENSRNOG00000055301 ENSRNOT00000091825 1 1 1 83 2 119654861 119657855 AAATCAAGACAAAGCTGGTCTC 59 119657899 119657917 TAAGCTCCGCAACAAACTG 59 Novel Rattus norvegicus 81 AABR07010121.1 ENSRNOG00000059906 ENSRNOT00000086707 2 1 1 89 2 124696884 124696902 ATCTGACTGTCTAGGGCAG 58 124696955 124702410 AAGCTGCTTAATCCAACGG 59 Novel Rattus norvegicus 81 AABR07010144.1 ENSRNOG00000057060 ENSRNOT00000083246 1 1 1 80 2 126274702 126274721 AATTCAGGACTCGGAGTGAG 59 126274761 126278789 CGTTCTTAATCTTCACTGTGGT 59 Novel Rattus norvegicus 81 AABR07010763.2 ENSRNOG00000058839 ENSRNOT00000084830 1 1 1 80 2 150610672 150610692 CACTAAGCAAGTAGAGGTCTC 58 150566191 150610633 TGTATTGTGGAAAGTCTTCCTG 58 Novel Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 2 1 1 60 2 154904934 154906801 AGGTGGAGTTCTGTATGAGG 59 154906820 154906842 CCACATCTTCCTCAATCATTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 3 1 2 101 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399215 156399590 AACCCATCAAGTTCCATAGGA 59 Novel Rattus norvegicus 81 AABR07011127.1 ENSRNOG00000053128 ENSRNOT00000077124 2 1 1 60 2 158795225 158795245 TCCTCAGAGAAACAAGAAACC 58 158791518 158791537 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011997.1 ENSRNOG00000052251 ENSRNOT00000089493 3 1 1 106 2 180921251 180921269 CAATATGTGGGAGCCTGGA 59 180929539 180929557 CAGTCCAATGCTTAGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 3 1 1 62 2 183343854 183343974 GAGCTGAGGAGTTTGTGGA 59 183343810 183343829 TTGAATGGGTCAGTACCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012131.2 ENSRNOG00000060439 ENSRNOT00000089636 3 1 1 60 2 186751428 186751446 CTAGAACTGCTTGGTGTCC 58 186751198 186751216 CTAAGTTACCCAGGACGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072759.2 ENSRNOG00000055468 ENSRNOT00000090513 1 1 1 60 2 193771845 193771864 CTACCTTCCTGTCACAGTGG 60 193769191 193769210 TATCAGCAATTCGTTCCTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014323.1 ENSRNOG00000059599 ENSRNOT00000077076 1 1 1 60 14 9529126 9529144 GAATCCAAGGCAACCACAG 59 9532392 9532411 CTTGTGCAAGTAAGAGTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014323.1 ENSRNOG00000059599 ENSRNOT00000077076 3 1 1 62 14 9529126 9529144 GAATCCAAGGCAACCACAG 59 9532394 9532413 ACCTTGTGCAAGTAAGAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014630.1 ENSRNOG00000052680 ENSRNOT00000085412 3 1 1 80 14 23971396 23972895 AAGAGGAAGGTAATGACATGG 58 23972936 23972955 GGTCCTTGTCTTATCTTGGG 58 Novel Rattus norvegicus 81 AABR07013070.1 ENSRNOG00000054507 ENSRNOT00000083297 1 1 1 81 2 221230473 221237037 GTGGCATAAGGAACTCCTG 58 221237081 221237100 TTCTAGTTTGCCAGGATGAG 57 Novel Rattus norvegicus 81 AABR07013140.1 ENSRNOG00000056951 ENSRNOT00000091134 2 1 1 105 2 224408728 224418840 GAATGAAGATGGAGAAGAAGCAG 60 224418901 224418923 CTTAAATAAGGGTGGTCCTTCAG 59 Novel Rattus norvegicus 81 AABR07013157.1 ENSRNOG00000051962 ENSRNOT00000080771 3 1 1 82 2 225171038 225171660 TTTGTCATCAGTTCTCTTCCTG 58 225170977 225170996 GCAGACCTGATTGATGATGG 59 Novel Rattus norvegicus 81 AABR07013672.1 ENSRNOG00000058016 ENSRNOT00000090184 1 1 1 80 2 248923043 248923062 GAAGTTGTCTGTCTGCTCTG 59 248923103 248924492 GCCATTATCACTTACCGTCAC 59 Novel Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 1 1 1 73 14 86711660 86711679 GAACCTGGATGACTTAACGT 58 86711715 86711735 CATTTAGTTCTGACTGCATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 2 1 1 63 1 149718225 149718243 TTTGTCCTTGCAAGTGTGC 60 149718265 149718289 CTACATTAGAATGACAGAAGGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 2 1 1 60 19 28044382 28044400 CCTGAGGTTTCTGACAGAG 57 28041821 28041841 ATATGGATTTGGCCTGAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000014713 3 1 4 80 3 140199437 140199455 GAATCAGTGAGGAGCTCCA 59 140202451 140221227 CTTTCTCCTTGCTAGAGGCT 59 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 1 1 1 61 1 165559986 165560004 AGCTCAAGGATGCAGTCTG 60 165559941 165559961 GATAAGTAGGTCCTCTTCCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 1 1 2 64 2 52609142 52609160 TCACCAAACTTCCTCAGGA 58 52591295 52591313 TTTGGTGAGGGTTGGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07073536.1 ENSRNOG00000060023 ENSRNOT00000079089 3 1 1 60 X 70570823 70570841 CCCAGCTTATGTCTGAGAC 57 70570776 70570795 CTACATTGCAGAGATCTGCA 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057328 ENSRNOT00000088144 1 1 1 63 2 28606745 28606763 CACGGAAGCTTAACATGGC 60 28606790 28606808 AAATACGGACTGCCTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059102 ENSRNOT00000082457 1 1 1 60 2 186255457 186255477 GTGCTAACCACTGTGATTTCC 60 186255498 186255517 CCACTACCACAAATTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055985 ENSRNOT00000085013 1 1 1 60 2 254002020 254002043 CATAGAGAAGATTAGTATGGTCCC 58 254001983 254002003 TGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051692.1 ENSRNOG00000056273 ENSRNOT00000090581 3 1 1 60 3 19441694 19441712 TACATGCACTGGTACCAGC 60 19441735 19441754 ATGTGGCATAAATCCAGGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053399 ENSRNOT00000087208 1 1 1 60 1 271059377 271059398 ATACAGAGAAGATTAGCATGGC 58 271059338 271059357 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000057134 ENSRNOT00000089316 1 1 1 60 4 19516042 19516063 CAAACCTAAGTTCCCATTAGGT 58 19516084 19516102 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0558.2 ENSRNOG00000051347 ENSRNOT00000076984 1 1 1 117 13 50696565 50696583 CTCCTAAGCAGCTCACTGG 60 50696664 50715175 GTTTCACTCTCCAACGCAG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000056556 2 1 2 81 7 116560030 116561002 GTGTGCAGAAAGAGCTCAG 59 116559967 116559985 GGTAGCAGTTGATGAGCAG 58 Novel Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 3 1 1 60 X 100207596 100207614 TACTACCACCAATGCCAGC 60 100206831 100206850 CTCGACAATCTTTCCTGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 2 1 1 61 5 107288851 107288869 GAAGCTGAAAGAAGCCACC 59 107288804 107288822 CAAAGAGGTCGAGGATCAG 57 Novel DesignNoJunction Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 1 2 4 82 5 171667126 171668412 TAAGAACCAGGCATACGCA 59 171667062 171667080 AAGCATCCAGTGAGCTCTG 60 Novel Rattus norvegicus 81 AABR07055805.1 ENSRNOG00000047335 ENSRNOT00000044932 1 1 1 84 7 10194590 10194609 ATGAATGTGATCAGTGTGGT 57 10194523 10194546 CATAGGGTTTCTCCAGTATGAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054232 ENSRNOT00000085282 2 1 1 82 14 14101124 14101144 GAGCTTACGTTTGTAGCTCAC 59 14101062 14101083 TTATATGTTACCCTTTCTCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 3 2 3 82 X 73665294 73665313 TCCTCCTAACTTTGCCTCTC 59 73664182 73665249 CATCAGAACCTTGTGGTCC 58 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000082425 2 1 3 60 20 3367355 3367373 CGTACACATGCTGTTCCTG 59 3367395 3367415 CTCTTACCGGTAAAGATCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058216 ENSRNOT00000088590 3 1 1 60 1 267567061 267567081 TTTCCCATTGGATGTTGATGC 60 267567101 267567121 CCTTCAGTACACTCTTCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061448.1 ENSRNOG00000054289 ENSRNOT00000079490 1 1 1 60 4 125326454 125326474 ACTACACAATGTAAGGTGGAC 58 125326413 125326431 GACATGTGACGAAGGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029866.1 ENSRNOG00000054223 ENSRNOT00000086471 1 1 1 60 10 56685035 56685053 CAGGTAATGCAGTTGGTCG 59 56684993 56685011 TAACCTGCCAAATCGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.10 ENSRNOG00000049262 ENSRNOT00000072539 1 1 1 60 1 121225513 121225532 CTGATCAGTCAGGCTACTGG 60 121225472 121225491 GCTTTGGTTATACCCAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054769 ENSRNOT00000085664 1 1 1 60 10 89562099 89562118 GAGTTGGAATAGGAGCTTGC 59 89562058 89562076 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055132 ENSRNOT00000084843 3 1 1 60 6 83452076 83452095 TCCTTCAATGTCCATGTGAG 58 83452118 83452136 TGAGAAGGCCTCTTCTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0746.3 ENSRNOG00000051300 ENSRNOT00000076663 3 1 1 60 X 73758047 73758065 ACTGCAGTGATTGTCATCC 58 73758005 73758023 CTGTCGCCTTTCCAAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068154.1 ENSRNOG00000027719 ENSRNOT00000038372 2 1 1 73 9 86257217 86257235 ACAAAGGAGTCAAGCTGTC 58 86257160 86257178 TAGCACAGAACAGTAACCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 1 1 1 73 7 34484785 34484803 GAATGGAAGGCATAGCGTG 59 34484842 34484860 GGTAAGGAGGATGAGCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 2 1 1 60 20 33520834 33520853 TCTCAGATCAACCACAAGCT 59 33493057 33493075 TCTCAGTCAGTTCAGACCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 2 1 1 60 X 107634271 107634291 AGAGAAACATACAGTCGTTCG 58 107634313 107634333 CAGTTCTCAAAGGTTTCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 3 1 1 66 1 158864624 158864643 TTGCCAGTATCTGTTGTCAC 58 158864674 158864692 CTGAGATTCCACCTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 2 1 1 84 X 123024311 123024329 GAAATCATAGGGCAAGCCA 58 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 2 1 1 82 10 35058564 35058582 TGTGTCACTCCCAGATTGG 59 35058499 35058517 GTAGAGCTACGTTCACAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 3 1 1 103 2 257462434 257462452 TGACAAGGCCAACAAACAC 59 257462519 257462538 TAGTTCCAGAAGCTAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290 1 1 3 80 X 73502410 73502434 GTCCTTTAGAACTGTTTACAGATCC 60 73502707 73504752 GAGCACGGTTAATGTCAACTC 60 Novel Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000085393 3 1 4 155 X 73460888 73460906 TGATGGGAATGCAAATCCT 57 73464155 73467010 AAGTCCATCAAACCAGCTG 58 Novel Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079511 3 1 2 82 4 113979350 113979369 ACTCATGTGGAAGGACACAG 60 113979527 113983113 CATCATCTCCATACAGTAGAAACAC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057277 ENSRNOT00000085623 1 1 1 60 15 57318119 57318137 GAGAAGATTAGCATGGCCC 58 57318077 57318095 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0746.4 ENSRNOG00000051339 ENSRNOT00000076603 3 1 1 60 X 73774727 73774747 TCAGATCCCATTACAGATGGT 58 73774687 73774705 GTCCTGAGTTCAAATCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051845 ENSRNOT00000078076 2 1 1 60 19 10729493 10729513 ATTCTGCTACTAGACCCTCCA 60 10729535 10729553 CTCTATGTCCAGCAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131885.1 ENSRNOG00000058920 ENSRNOT00000091946 2 1 1 84 6 136301478 136303997 GTGCTATAACCGAGACTGGT 59 136304044 136304062 CTTGCTCCACATCCTCTCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052146 ENSRNOT00000089834 1 1 1 60 13 65465873 65465892 ACATATGCATCAATCGGCAG 59 65465832 65465853 GACAGAACACTTGAGTTTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053320 ENSRNOT00000082311 2 1 1 60 13 536879 536901 CGATACAGAGAAGATTAGCATGG 59 536921 536939 AACGCTTCACAAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057745 ENSRNOT00000086074 1 1 1 68 X 118542498 118542519 TCCTTGTAACCAATTAGGTCTG 58 118542451 118542469 GCAGGATAGTTTCTCGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057562 ENSRNOT00000088093 3 1 1 61 13 89884241 89884262 CAGATCGTATAAATCTTTCGCC 58 89884201 89884221 GACTCAGAATTGTTCCTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.1 ENSRNOG00000051012 ENSRNOT00000075395 1 1 1 60 3 150414593 150414611 CTCCTAACAGCAGGAGCAG 60 150414551 150414570 AGGAAAGGATCCTAAAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060960 ENSRNOT00000085053 2 1 1 60 15 20186332 20186350 TCCAAGGCGCAATTATTGC 60 20186290 20186310 ATTTGACTCTGAAGCAGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055163 ENSRNOT00000078508 3 1 1 60 13 113962483 113962502 CCATAGGTGGTAGACAGGAG 59 113962442 113962464 GATGTTCATAGGTCAGAACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.3 ENSRNOG00000053486 ENSRNOT00000090713 1 1 1 83 4 114764490 114764655 ATTCAGCCTGAGATGCTGG 60 114764702 114764720 GTTCAGGAGGTCTCTGCTC 60 Novel Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 3 1 1 103 6 139660634 139660652 CAGCTTGGGTTTCCTTGTC 59 139660439 139660457 AGAGTTTCAGGGACCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341 3 1 4 121 20 4428452 4428470 ATCAGTCAGCCTCTGTAGG 58 4427877 4428367 GTAAGTAGCAGAACTGGGC 58 Novel Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 2 1 1 60 2 35185897 35185916 CCCTCTTCCTTCTGTTCCTG 60 35185942 35185960 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 3 1 1 61 14 32773478 32773498 TTTGATACTCAACTGCCTGAG 58 32770339 32770360 AGGTGCTTTCCAGTATTATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000062051 2 1 2 93 1 1440117 1440396 AACCAAGACCAGTGGTCAC 60 1440042 1440062 GATGTTGAATTCCCAGGAAGC 60 Novel Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 1 1 1 71 10 66654457 66654475 AGTTGAGTCTAGCAGCCTG 59 66652844 66652862 TCTCTTCGGTCTCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 2 1 1 60 5 46314606 46314627 CAACAAAGAGAATACGGAACAG 58 46306981 46307000 TCTGAAATCCACTCTGTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 3 2 3 88 1 19639163 19639281 ACATTGATGTATCTGCAACTGC 60 19639096 19639116 CTCGTTGATGTTCTGGATGTC 59 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 3 1 1 62 4 121701581 121701601 GTGCTCTTTACACAATCACTC 57 121703149 121703168 TTCTCATGAAGTGCCTTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 3 1 2 61 4 157753881 157753902 TTCCATCCACAGAACTAAACAC 59 157754140 157754158 TTGACAGTCAGGGCTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 2 2 3 80 1 47513321 47513706 GTCCACGTTCAGAAGAAGGA 60 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 2 1 1 61 1 64235371 64235389 CGTCACTAAGCAGACACAG 58 64236956 64236976 GCTTTGACCAATGATTCATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 1 1 1 60 3 33949970 33949988 ACCTGATGCTCAAGAGTCC 59 33946844 33946865 AATGATTAGTTGTCACCACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 2 1 1 141 11 72450133 72450152 CCTTGACCCAATCTGAAGAG 58 72450607 72450625 CGAAGCTTCTGAGTCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 3 1 1 63 11 83801320 83801338 CTCTGGAGCCAAATCATGG 58 83814237 83814256 AAGTTCCATCTCTGAACTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 2 1 1 60 9 26953158 26953177 GTGGATCCAACTTTCTGGAG 58 26952788 26952808 TCTAAAGTCGATCACATTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 1 1 1 60 3 149259496 149259517 AGTGAGTTTCTTCTAAAGCCTC 58 149258200 149258220 GCTAGGTAACTCTTGAGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 1 1 1 60 12 50979102 50979120 GGAGTGCTGTGAATATCCC 58 50979860 50979880 AGTCAACCAAACATGTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 1 1 1 72 16 82332004 82332022 TTCATTGTGGACATGGCTG 59 82331607 82331625 CACGAAGACAAGCCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 1 1 1 76 X 77957182 77957200 CTCCAGCCCTTCATCTCTG 60 77956501 77956519 TACCAAGAGGTCACTGGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 2 1 1 60 7 34176254 34176272 CCTTCCTGCAGGGATATCC 59 34177879 34177899 TCTCAGCTTCCTTGTTAGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 1 1 1 82 7 38667462 38667480 CAGCTCGCAACAATACCAG 59 38679375 38679393 GTGTTGTTGGTCTCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 2 1 1 61 8 12822964 12822982 TCAGCCAATGAGTAGCGTC 60 12794640 12794658 GCTCTCCATCTGCTCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 1 1 1 60 7 80270653 80270671 TACCAGTATGCTAGAGGCC 58 80283158 80283177 CTCCACTTCTCTTCTCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 1 1 1 62 8 48379629 48379647 AAGTCAGACGCTGAAAGCT 60 48308931 48308949 TCTGCAGACGTCTTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 3 1 1 64 8 48379629 48379647 AAGTCAGACGCTGAAAGCT 60 48308929 48308947 TCTCTGCAGACGTCTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 2 1 1 60 7 105102042 105102062 GTTAGTCATCTTCTGAGCCTC 58 105122128 105122148 AAAGATGGTTCTTAGCTCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 2 1 1 60 8 56024593 56024611 ACAAGTCACTGCCAATCAC 58 56024036 56024056 TTATAGCTTTGTCCTTCGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 1 1 1 64 4 16953185 16953203 GATTCAGCCTAAGTCCTGC 58 16951453 16951471 AAACTTCCCTCCATTGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 2 1 1 62 20 24445704 24445723 TACAACAGACACTCCTGGAC 59 24445311 24445332 CTGTGAGATATCATTGGAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 3 1 1 62 20 24445704 24445722 ACAACAGACACTCCTGGAC 59 24445310 24445331 GCTGTGAGATATCATTGGAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 2 1 1 69 4 44646938 44646956 CCAGCAGTGTGAAAGACAG 59 44639574 44639592 GTAATGACCAGACTGGGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 1 1 1 74 2 49857580 49857603 GGATCTGAAGTGTTATGAACTCAC 60 49908084 49908108 GGAGATAATAATTTCACCATGTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665 2 1 2 92 4 68426294 68426312 ACATCCTTCCAGATGGCTC 59 68426368 68451421 CCTGCACTGCTTCATAGGT 60 Novel Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 3 1 1 84 7 137542323 137542342 GAGGAGATGGTAATCCACAC 58 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 2 1 1 80 7 143620337 143620355 TCTCACCTCAAATCTGCAG 57 143625187 143625205 TTCTCTTCCTGCCTTTCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 1 1 1 74 1 281314664 281314682 AATGGAAGTTACCCAGCCA 59 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 2 1 1 60 2 128381465 128381484 CTGCCATTCTATTAGCCCTC 58 128381918 128381936 CAGTCCTGGCTTTCTATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 3 1 1 60 2 128381460 128381480 AGGGACTGCCATTCTATTAGC 60 128381911 128381931 CTGGCTTTCTATCCATTGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 3 1 1 70 2 155301990 155302009 TGTTGGTTGTAGCTTCAGTC 58 155303723 155303742 TAAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751 2 1 2 81 2 156341582 156341603 AACACAACATAACGGAACTTCC 60 156317639 156341545 GTTGCTGTTACATATAGAGGAGTG 59 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 2 2 2 61 2 156405559 156405577 AGGACAGGAACAACCAGAG 59 156399630 156399648 GTAGTGGTGATGTGGTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 3 1 2 81 2 156399218 156399596 GTCAAATCCTATGGAACTTGATGG 60 156399160 156399179 CTCCTTCTCCTGTACTTGGC 60 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 1 1 1 60 2 196554733 196554751 CGTTGTCCTTGTGTTCGTG 60 196554483 196554501 GGAGCATTCTTTGTAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 1 1 1 63 14 3792321 3792340 CATTAACACTTGAGCAACGG 58 3792966 3792984 TCCGCAACATATAAGCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd6 ENSRNOG00000029042 ENSRNOT00000051268 1 1 1 60 MT 13842 13863 TTTGGGTATACAACTGCTATGG 58 13803 13824 ACCAATTAGACCCTCAAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkaa1 ENSRNOG00000012799 ENSRNOT00000017626 3 1 1 80 2 54884827 54888154 GATATCAGGGAACATGAATGGT 58 54888192 54888213 CATGGTTGAACTATAAGACGGG 59 NA Rattus norvegicus 81 Nmnat1 ENSRNOG00000015962 ENSRNOT00000048914 2 1 1 80 5 166417139 166417157 ACTGGGTGGAAGTAGACAC 59 166411399 166417095 TCTCCTGATGGTGTCTGAG 58 NA Rattus norvegicus 81 Crct1 ENSRNOG00000009574 ENSRNOT00000012684 1 1 1 67 2 193330653 193330671 CCAAAGGGTCTTCCCAGAG 60 193330604 193330622 AGATGAGGAGGACGTAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24b ENSRNOG00000023373 ENSRNOT00000038509 2 1 1 80 2 230295918 230298151 TACACATCAAGCAAAGGTGAG 59 230295858 230295879 ATAAACATCAGCCAGTGAACTC 59 NA Rattus norvegicus 81 RGD1562962 ENSRNOG00000039192 ENSRNOT00000045023 1 1 1 60 X 112555688 112555706 GAACATGACCAATGGCGAG 59 112555729 112555748 GGACACCAAGAAGTTGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem27 ENSRNOG00000003960 ENSRNOT00000005348 2 1 1 80 X 32139394 32148909 AGGAACAGAAATTTCCCACG 59 32139333 32139351 TTCAAAGGGTCTGTGACCA 59 NA Rattus norvegicus 81 Smim11 ENSRNOG00000039877 ENSRNOT00000061235 1 1 1 115 11 32454834 32458493 TGAACTGGAAGGTTCTCGA 58 32458572 32458590 TTCCAAGCTTCTCCTCTGG 59 NA Rattus norvegicus 81 Ankrd34a ENSRNOG00000033741 ENSRNOT00000043535 1 1 1 182 2 198721760 198722346 GGACATTCAGGGATAGGCT 59 198722492 198722510 GTAGCTTACCCTGTCCCAC 60 NA InUTR Rattus norvegicus 81 LOC100359563 ENSRNOG00000029843 ENSRNOT00000043008 3 1 1 60 8 93439881 93439900 TCGTTTCCAGATGAGAATCC 57 93439921 93439941 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 2 3 3 80 2 219075477 219077161 GTTGAACTGATTATCCAAGGCTC 60 219075419 219075437 AGTGTCTCCCTCTTTGACG 59 NA Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 3 2 2 80 2 143590146 143590166 AGAAAGCTTTGGGACAATTGG 60 143602116 143602243 AGATTCCTCATCACCTCTTGG 59 NA Rattus norvegicus 81 Siae ENSRNOG00000031266 ENSRNOT00000044293 3 1 1 80 8 40110083 40110103 CTGCTCAACCTCACTTATGAC 59 40110143 40111514 GTCACTGCAACATGAGATCTC 59 NA Rattus norvegicus 81 Gulo ENSRNOG00000016648 ENSRNOT00000022702 1 1 1 80 15 42689741 42689759 CTTCAGACATTGCCTGCAC 60 42688121 42689697 TCTTCTCCTTGTCCACCTG 59 NA Rattus norvegicus 81 Mir6323 ENSRNOG00000048889 ENSRNOT00000074134 2 1 1 73 11 84827032 84827050 TCTGTGAATGCAGTGAGTG 58 84827087 84827105 GAGATGGAGTTCCAGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 3 2 2 82 X 156326262 156326280 CTCTTGAAGTTCATCCGGC 59 156326324 156326427 TCATTCATCTTGGTAGCTGGA 59 NA Rattus norvegicus 81 Mir6325 ENSRNOG00000049963 ENSRNOT00000072252 1 1 1 60 11 36729267 36729285 TTGAACTTGCTGCTGACCT 60 36729309 36729327 AGTTCAGTTGAAAGGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000064635 3 1 2 135 15 38097014 38097032 CTAAGGGAACCTCTCCGTG 59 38097322 38097340 GCTTGGAAAGACACAGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1543 ENSRNOG00000050294 ENSRNOT00000051112 1 1 1 60 11 43394655 43394678 TCAGAGGAATAACAGATCGTACAG 60 43394697 43394715 ATGAGGAAGAACACCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm9sf1 ENSRNOG00000019710 ENSRNOT00000026734 2 1 1 80 15 34319430 34319448 CACTTCTACCGGCAAATCG 59 34316721 34319388 GAAGAAAGGCACAGAGAAGAG 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843,ENSRNOT00000087293,ENSRNOT00000005328 2 4 5 87 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443984 26444273 CCATAGGAAGGATACGGCTG 60 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166,ENSRNOT00000056161 1 2 2 80 8 118067160 118067179 ATGGTGATGAGAAATCTGGG 57 118067219 118085416 AAGATGGGATATCTTCAACCTG 58 NA Rattus norvegicus 81 Olr1194 ENSRNOG00000045972 ENSRNOT00000048448 1 1 1 60 8 40192295 40192313 CAGCCACTACTTCTGTGAC 58 40192253 40192273 ATCATAGGTACTAGAGCAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1194 ENSRNOG00000045972 ENSRNOT00000048448 2 1 1 60 8 40192641 40192660 CCCATGTACTTCTTCCTCAG 57 40192600 40192621 TAATGACAGAGGAGTAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd20 ENSRNOG00000000517 ENSRNOT00000000624 2 1 1 80 20 6214746 6215954 TGTTGGGAAGGATGTTTGG 58 6215998 6216016 CTTCTGCGATCTCGTACTC 58 NA Rattus norvegicus 81 AC118954.1 ENSRNOG00000058912 ENSRNOT00000090993 3 1 1 80 20 7333894 7333912 TGACACCCGTTTAAGACTG 57 7333954 7335369 CTGTAGCCACATAATTTGTCC 57 NA Rattus norvegicus 81 Mir3075 ENSRNOG00000046554 ENSRNOT00000074012 3 1 1 60 16 1822817 1822835 CTGCGGTTTGTACTGTCTG 59 1822858 1822877 CCAAGGACAGAAGACAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074,ENSRNOT00000090588 1 2 2 80 8 62931463 62931481 GCTATCTTGGGTTCACGTC 58 62931522 62933128 GAGTAGTGCTTGTAGATCTTGG 58 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000002221 3 1 2 85 11 36880196 36910233 AGATAATGGCAAAGTGCTCAC 59 36910279 36910298 TTTCTTAGAGACCGAGCAGG 59 NA Rattus norvegicus 81 Bace2 ENSRNOG00000001953 ENSRNOT00000002679 2 1 1 80 11 37867953 37867971 GGAGGGATTCTACGTGGTC 59 37868015 37880383 GTACCTGCAATCTCTGCAC 59 NA Rattus norvegicus 81 LOC686660 ENSRNOG00000049480 ENSRNOT00000071063 2 1 1 60 1 170205989 170206011 CTCTATCTTGGTTACTAAAGCCC 59 170206031 170206049 GACTTTCAGTGTCAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mto1 ENSRNOG00000037659 ENSRNOT00000057138 2 1 1 80 8 85809546 85809641 CAGAACATGCAGAAAGAAATCC 58 85809679 85809700 CTCTGCAAGAACTAGATCTTCC 58 NA Rattus norvegicus 81 Mto1 ENSRNOG00000037659 ENSRNOT00000057138 3 1 1 81 8 85809685 85809703 TCTAGTTCTTGCAGAGCCA 58 85809747 85812591 CATTGTACTTCCATCAGCCA 58 NA Rattus norvegicus 81 Abca4 ENSRNOG00000012892 ENSRNOT00000017878 3 1 1 80 2 225707504 225707525 CCATGTGAAGTACAAGATTCGG 60 225707565 225708112 CCAGAATCCCAGTACCTGTC 60 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 3 3 3 147 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471746 170471764 AGAATGGATGAGCTTCCCA 58 NA Rattus norvegicus 81 RGD1566387 ENSRNOG00000013698 ENSRNOT00000018322 1 1 1 60 X 122314226 122314245 AACAAACCGTAAAGGAAGGA 57 122314267 122314286 CATTTATCATAGCCAGCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npy4r ENSRNOG00000061026 ENSRNOT00000083105 3 1 1 60 16 10490099 10490117 AATAGCATCCTGAACGACC 57 10490057 10490076 CTTCCAGAAACTCCACAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp4f ENSRNOG00000015527 ENSRNOT00000041128 1 1 1 83 1 74181097 74181116 ACAACCTTCAAAGTTCTCCA 57 74174927 74181051 TATATTTGCGTGTGCAGCA 58 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 2 2 2 80 2 30361890 30361911 GTGATGATTCTGACATTTGGGA 59 30361949 30362148 TTAGAGCATGCTTAAAGGAAGC 59 NA Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000008932,ENSRNOT00000082180 1 2 2 84 14 79459592 79459973 AGTTATATGGCATCCAGGGT 58 79459527 79459545 TCCTTTGGAACACTCTGGG 59 NA Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000008932,ENSRNOT00000082180 3 2 2 84 14 79459592 79459974 AAGTTATATGGCATCCAGGGT 59 79459528 79459546 CCTTTGGAACACTCTGGGT 60 NA Rattus norvegicus 81 Sowahd ENSRNOG00000049392 ENSRNOT00000075314 1 1 1 60 X 123663244 123663264 GATATGGTCATCAAGGTGCTG 59 123663286 123663304 TGTAATCTCGACGTGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar7b ENSRNOG00000046302 ENSRNOT00000021559 3 1 1 60 1 22519523 22519543 AAACTGAACAGATCCTGTGTC 58 22519483 22519501 CATAAAGGATGAGGCGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map4k2 ENSRNOG00000021061 ENSRNOT00000064798 3 1 1 80 1 221713917 221713935 TGTTTCCAGACACCATCCA 59 221713976 221714101 TCACTTGGTGAAATTGGATCTC 59 NA Rattus norvegicus 81 Mapk1ip1 ENSRNOG00000016935 ENSRNOT00000022714 2 1 1 60 1 211195711 211195729 GAGAGCACCTTGATGACCA 59 211195669 211195687 TGATGGCTTTGTTGTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcd3 ENSRNOG00000011929 ENSRNOT00000016739 3 1 1 80 2 225359162 225359514 AGTATCTCCAAGCCTTCACC 59 225359101 225359119 CTTGTGTAAGCAGCTGGTC 59 NA Rattus norvegicus 81 Cox6b1 ENSRNOG00000024309 ENSRNOT00000032026 3 1 1 98 1 89082170 89083107 GAACTACCTGGACTTCCACC 60 89082091 89082110 CAGAGGGACTTGTACACTCG 60 NA Rattus norvegicus 81 LOC102547059 ENSRNOG00000046652 ENSRNOT00000072762 3 1 1 80 1 88324954 88324972 CCATTCCCACAGGAATCTG 58 88325013 88326691 TTCATATTGGCAAGACTCAGTG 59 NA Rattus norvegicus 81 AC139873.3 ENSRNOG00000055159 ENSRNOT00000047131 1 1 1 60 3 73717340 73717361 TAAGCCTCTGTTCTATACGGTC 59 73717301 73717319 GATTACCACAAGCACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lect2 ENSRNOG00000012189 ENSRNOT00000016252 2 1 1 80 17 8489441 8490542 CTTTGATTTCCACTGCCCTG 60 8490585 8490603 TGTCACATGTCCGGATCTC 59 NA Rattus norvegicus 81 AC096024.1 ENSRNOG00000015367 ENSRNOT00000020690 2 1 1 60 1 141447132 141447151 GGTCTTCAGAACCCTCTCAG 60 141447173 141447192 CCTGCTGGTCTCTAAATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.3 ENSRNOG00000051140 ENSRNOT00000076295 3 1 1 60 X 58544737 58544760 TAAGAGGATGCTGGCTATTAAGAG 60 58544779 58544797 TCTCTTCTTGTCACCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5sl ENSRNOG00000020596 ENSRNOT00000027960 1 1 1 80 1 82414759 82415963 AGCATGGAGAATCGATCCT 58 82416006 82416025 CTGCTTCAGGATGAACTGAG 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 2 3 3 83 1 178388930 178390104 GCTGATTGATTCCTTAGAATGG 57 178390146 178390166 TATGTATTAGGTCTGTCGCCT 58 NA Rattus norvegicus 81 LOC691368 ENSRNOG00000045847 ENSRNOT00000051827 2 1 1 60 3 102457167 102457189 CTGTACCCAAGATGATTTCTGAC 59 102457208 102457227 CAACTGTGGAATGAGATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006278.1 ENSRNOG00000020980 ENSRNOT00000028483 3 1 1 80 1 227901790 227901809 TGCTAGAATTCTGCATTGCT 58 227901851 227904511 CTACAAGAACCTCACTGGAG 57 NA Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000066363,ENSRNOT00000082017 1 2 3 111 6 2316418 2316436 AAGTCTTGCAGAGTCTGGG 59 2315944 2315962 ACTGTCTGCACTAAGGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000066363,ENSRNOT00000082017 2 2 3 112 6 2316419 2316437 GAAGTCTTGCAGAGTCTGG 58 2315944 2315962 ACTGTCTGCACTAAGGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc30 ENSRNOG00000008560 ENSRNOT00000011325 1 1 1 80 5 138395655 138395677 GAAGAGATCAAGGAAGCAAAGAG 60 138389326 138395617 TAGAAGAATCCTCCTCTGCTG 59 NA Rattus norvegicus 81 Dnajc18 ENSRNOG00000019995 ENSRNOT00000027194 1 1 1 80 18 28490216 28493593 GGGTACAAAGAATCAAGAAGTG 57 28490157 28490176 TCTTAAGCTCTTCATCGCTG 58 NA Rattus norvegicus 81 LOC100363782 ENSRNOG00000050510 ENSRNOT00000042711 3 1 1 60 1 220482145 220482163 GACAAGTGCCAAGAATGCC 60 220482103 220482121 GATCTCTGCAGCCATTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000023732 1 1 2 80 1 98959061 98959081 TCAACAAACACAGACACAACC 60 98957457 98959023 GTCTTTAAGAAAGGGAGAAGCTG 60 NA Rattus norvegicus 81 Smpx ENSRNOG00000007495 ENSRNOT00000010027 3 1 1 149 X 40071228 40082842 GTCAGATCCATTCAGGCCA 60 40063483 40063501 CTTCATTCCAGGAACTGGC 59 NA Rattus norvegicus 81 B3gnt4 ENSRNOG00000008544 ENSRNOT00000011286 1 1 1 60 12 38504483 38504501 AGTTGTTAACACCTCCCTG 57 38504441 38504462 ATGACGATAGGTTAAGAAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt8 ENSRNOG00000020245 ENSRNOT00000027454 3 1 1 80 1 215605728 215605747 AGCAACCCAAGGATAAAGAG 58 215605790 215606198 CCACATCTGGTTGAACCAG 59 NA Rattus norvegicus 81 LOC100910373 ENSRNOG00000021490 ENSRNOT00000049921 1 1 1 80 8 44559104 44559123 ATCAGAAACAAACAGCCGAC 59 44549297 44559064 GCTCCATATCTGTATCATTGGC 59 NA Rattus norvegicus 81 AABR07036649.1 ENSRNOG00000046427 ENSRNOT00000071323 2 1 1 60 12 52664865 52664883 GGGACACATCTGTAATCCC 57 52664905 52664925 CTAATTTCGAACTTGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036649.1 ENSRNOG00000046427 ENSRNOT00000071323 3 1 1 60 12 52664692 52664712 CTCAACTACTTTAAGGTGCCG 59 52664734 52664752 TTGCTTGTCTAGGAAAGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910729 ENSRNOG00000050714 ENSRNOT00000070885 2 1 1 60 8 62985064 62985082 CTATGGAGAAACGCATCGC 59 62985022 62985040 TTCTCAGACTCGAGGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910729 ENSRNOG00000050714 ENSRNOT00000070885 3 1 1 60 8 62984872 62984891 TCATTGGTGGAGTCTCAGTC 59 62984831 62984849 TGTACTCAGAACCAGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr326 ENSRNOG00000021072 ENSRNOT00000028606 1 1 1 60 1 228557736 228557754 CTATTCGCTGGTGATCCCT 59 228557694 228557715 GATCTCTTTGTTCCTCAAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35a4 ENSRNOG00000002908 ENSRNOT00000003878 3 1 1 66 18 29506257 29506275 AGATGAAGTCAACAGTGGC 58 29506993 29507011 GAATCCCTTGAAGAACGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 2 2 2 80 3 6492367 6493266 CCTAACCCAGATGAATATTACCCA 60 6493300 6493323 GTCTTCAGGGTCTTCATAATATGG 59 NA Rattus norvegicus 81 Lingo4 ENSRNOG00000022863 ENSRNOT00000036656 1 1 1 86 2 195623683 195626824 ACACTATGCACAAATCGAAGTG 60 195626871 195626889 CCCTCACAGGTGATAACCC 60 NA InUTR Rattus norvegicus 81 Zfp954 ENSRNOG00000022742 ENSRNOT00000042086 3 1 1 80 1 69857486 69857928 GTTTATGGACAGGTTGTTGG 57 69857971 69857989 AACTAACACCTCCTTCTGC 57 NA Rattus norvegicus 81 Pim1 ENSRNOG00000000529 ENSRNOT00000000637 1 1 1 80 20 8168178 8168199 GAGATATTCCATTTGAGCACGA 59 8168238 8169168 GTTGACATTCTGAAGAGACCC 59 NA Rattus norvegicus 81 Ddx41 ENSRNOG00000012771 ENSRNOT00000018114 3 1 1 80 17 9636475 9636577 AAATCGAGAACTATGTGCACC 59 9636617 9636637 CCTTGTTGATAAAGGTGGTGG 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 2 2 2 80 1 32224227 32224999 CAACAGAACAGGATTTGTGC 58 32225039 32225060 GTAATATTCAAAGTCTGCCGGT 59 NA Rattus norvegicus 81 Rn60_X_0594.5 ENSRNOG00000003345 ENSRNOT00000004460 1 1 1 60 X 58565441 58565462 GTACGAGTTGCACATCTATCTG 59 58565402 58565421 GCTTTACCAAACGCTTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.5 ENSRNOG00000003345 ENSRNOT00000004460 3 1 1 60 X 58565773 58565793 ATGGAATGTCCTTAATGCCCT 60 58565733 58565751 ATACACAAAGCGACCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plcl2 ENSRNOG00000013368 ENSRNOT00000018146 2 1 1 80 9 1878095 1878113 AGGTGTTCAAGAATGCCCA 60 1875737 1878054 TGAAAGAAACCACTGCATTCTG 60 NA Rattus norvegicus 81 Jrk ENSRNOG00000027238 ENSRNOT00000000199 3 1 1 92 7 115945095 115946410 GTACAGGGTCCACAGTTCC 60 115945021 115945039 AGATTTGACGGTCTGAGCT 59 NA InUTR Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000083779 3 2 3 88 5 22764941 22769804 AAGATAAAGAGGCAAAGCACG 59 22764873 22764891 AATGACCATGAACCACGTG 59 NA Rattus norvegicus 81 Mir30a ENSRNOG00000035646 ENSRNOT00000053769 3 1 1 60 9 29542638 29542658 ACTGTAAACATCCTCGACTGG 60 29542679 29542698 CAAACATCCGACTGAAAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsm ENSRNOG00000030276 ENSRNOT00000045830 2 1 1 81 17 3823197 3823215 AGAAGGACAGATGTTCCGG 59 3823260 3823279 GCCTTGAGGTCTAGAGCAG 60 NA Rattus norvegicus 81 Ndufv2 ENSRNOG00000042503 ENSRNOT00000016965 3 1 1 81 9 113884059 113884083 CATAGAGATACTCCTGAGAATAACC 58 113883918 113884023 TGACTATTGCCTCTATCCTCTC 59 NA Rattus norvegicus 81 Adipor2 ENSRNOG00000007990 ENSRNOT00000010556 1 1 1 80 4 151421878 151425377 AGAGTTTGTTTGTAAGGTGTGG 59 151421819 151421840 TCATTGTCCTTAAGCCAATCTG 59 NA Rattus norvegicus 81 Fam168a ENSRNOG00000018873 ENSRNOT00000025827 3 1 1 81 1 165854236 165859819 TGCTCCAGAATTTCAGTTCC 58 165865017 165865036 ACAGGAAGAGGAGTTCTGTG 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 1 2 2 80 1 205734242 205734262 CTCCTTGTGAACTGCTTAGAG 59 205734301 205736868 CAACATTGCTATTCTGACTGCT 59 NA Rattus norvegicus 81 Rn60_17_0453.2 ENSRNOG00000060574 ENSRNOT00000077821 3 1 1 82 17 45211092 45211110 ATTCACAGGAAGGCAAGGT 59 45211154 45211322 AGGATATGTTTGTCTCCTGGT 59 NA Rattus norvegicus 81 Rn60_17_0530.1 ENSRNOG00000059319 ENSRNOT00000087008 1 1 1 60 17 52954209 52954227 AAGAGGAGGAAGACAGAGG 58 52954251 52954269 GGCTGAGAACCATCAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arap1 ENSRNOG00000019555 ENSRNOT00000030037 2 1 1 80 1 166498782 166498806 TCTTATATCTATCAGAAGCGATGGG 60 166498841 166499117 AGAGTAGGCATCCTTGTTACTG 60 NA Rattus norvegicus 81 Mir23b ENSRNOG00000035467 ENSRNOT00000053590 2 1 1 63 17 823247 823265 CCTGGCATGCTGATTTGTG 60 823292 823310 CATGGTTGCGTGGTAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir377 ENSRNOG00000035610 ENSRNOT00000053733 3 1 1 77 6 133890701 133890719 GTTGCCCTTGGTGAATTCG 60 133890759 133890778 CCAAGCAGGCTTTGATACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp161 ENSRNOG00000016719 ENSRNOT00000022396 1 1 1 151 9 117737828 117739078 CTGCTTATATCTGGCTTGCC 59 117741036 117741055 CAGCGTCTTATGATCATCGT 58 NA InUTR Rattus norvegicus 81 Bmp10 ENSRNOG00000009316 ENSRNOT00000012365 2 1 1 80 4 119225223 119229607 GAGCTTCAAGAATGAAGATCTG 57 119229648 119229666 GACACGTTGAAGAGGAGAG 58 NA Rattus norvegicus 81 Rn60_7_0063.1 ENSRNOG00000048677 ENSRNOT00000071429 1 1 1 60 7 6157535 6157555 TTACATCTGCTTGTATCCCTC 57 6157577 6157595 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735,ENSRNOT00000084214 3 2 2 80 12 52040128 52040147 TGTACACAAGCCACTTTGAG 59 52040190 52040327 GATTCATGCCAAGCAGAGG 59 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000005646 1 1 2 80 14 84164899 84169696 GTCTGTTCAACAGAGTGCT 58 84164837 84164855 AAACTGGGCAAAGAAGTGG 59 NA Rattus norvegicus 81 LOC100910595 ENSRNOG00000050717 ENSRNOT00000074413 1 1 1 60 8 43054952 43054971 ATTGATCTCTGCCATTCCAC 58 43054911 43054929 TCTCTGCCACAAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.7 ENSRNOG00000051250 ENSRNOT00000075907 3 1 1 60 X 58579896 58579914 GAATTGGGAACAGCCTGTG 59 58579854 58579876 CTGAGTCAATGATAGCCAATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfbp1 ENSRNOG00000058780 ENSRNOT00000077177 2 1 1 80 14 87450724 87451579 AGAAATGGAAGGAGCCCTG 59 87451621 87451641 CATCTCCTGCTTTCTGTTGAG 59 NA Rattus norvegicus 81 Farsb ENSRNOG00000014119 ENSRNOT00000019685 3 1 1 80 9 84361579 84361598 GACGCAGCTATTGCTTATGG 60 84361072 84361542 GAGAGGAAATTGATTAGCTATGGTG 60 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 2 2 3 69 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383831 78383849 AGATTTACCCACCAGGAGG 58 NA DesignRelaxed Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990,ENSRNOT00000028763 3 2 2 80 1 222536946 222536967 TATTTGATTACCTAGTGGCCCA 59 222536673 222536905 GCACAGCAGACACTATCTG 58 NA Rattus norvegicus 81 Adamtsl3 ENSRNOG00000010840 ENSRNOT00000032106 1 1 1 80 1 144495566 144495585 AAGGCATCGTCTCATAAGTC 58 144495628 144510688 GACAGAACACTTCGACCAG 58 NA Rattus norvegicus 81 Olr753 ENSRNOG00000046847 ENSRNOT00000043765 1 1 1 60 3 102554057 102554075 TGTGCTATTCTTTGGACCC 57 102554098 102554117 CACCCAAGTGATGCTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lage3 ENSRNOG00000053456 ENSRNOT00000078304 2 1 1 81 X 156355662 156355998 TCATAAATTCGCCCTCTTCG 58 156356042 156356060 TTCGACATCAGGAGCTAGG 59 NA Rattus norvegicus 81 Gdpd5 ENSRNOG00000036859 ENSRNOT00000055321 2 1 1 80 1 164409748 164410397 GTGGTTCCTCAAGACTGAC 58 164410441 164410459 ATGGACTGGTTCTCAACCT 58 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047425 ENSRNOT00000071019 3 1 1 60 8 41394970 41394990 CTTGTTTGTCCTGTTCTTGGT 59 41395012 41395030 CATCAGAGTCAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crtac1 ENSRNOG00000015220 ENSRNOT00000020568 1 1 1 80 1 261546360 261546379 GTTTATGGCAACTGGAATGG 58 261544176 261546317 AGCAATGTCCCTAAATCGG 58 NA Rattus norvegicus 81 Crtac1 ENSRNOG00000015220 ENSRNOT00000020568 2 1 1 80 1 261546359 261546378 TTTATGGCAACTGGAATGGC 59 261544175 261546317 AAGCAATGTCCCTAAATCGG 58 NA Rattus norvegicus 81 Rn60_X_0626.1 ENSRNOG00000049958 ENSRNOT00000072090 3 1 1 60 X 61920222 61920242 ATGAGAATGAGGAGATGACTG 57 61920263 61920282 AAACAAGGAGAAAGCACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heatr3 ENSRNOG00000015459 ENSRNOT00000020793 3 1 1 80 19 19889277 19889298 GTGTTTGGAGATTGTGTTACAG 58 19884326 19889238 TGTAAACAATAGGCTACGGAG 58 NA Rattus norvegicus 81 Kptn ENSRNOG00000001493 ENSRNOT00000002043 3 1 1 81 1 78020614 78021613 TGGTATACTGGGACCTTCTG 58 78021656 78021675 CAGAGTACGCTGTCAAACTG 59 NA Rattus norvegicus 81 Cherp ENSRNOG00000012323 ENSRNOT00000017424 1 1 1 81 16 19075380 19075399 CGGCTACTTTGATGACTCCA 60 19075443 19075616 ATTGATGAGAGTCGCCTGG 60 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000083362 2 1 3 264 X 62365972 62365990 ATCCGGCACTACGTTTCTC 60 62366680 62366698 CTCATCCTCCAACAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000083362 3 1 3 265 X 62365972 62365990 ATCCGGCACTACGTTTCTC 60 62366681 62366699 CCTCATCCTCCAACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Hey2 ENSRNOG00000013364 ENSRNOT00000018718 3 1 1 124 1 29193472 29193490 AAGACTAGTGCCAACAGCT 59 29196395 29199241 CGTCAAAGTAGCCTTTCCC 59 NA Rattus norvegicus 81 Pole ENSRNOG00000037449 ENSRNOT00000067453 2 1 1 80 12 52443706 52443725 CTCTCAAATTCCCTGATGCT 58 52442952 52443663 TAGTGATGAGGTAGCCCTG 58 NA Rattus norvegicus 81 Vps18 ENSRNOG00000013689 ENSRNOT00000018717 3 1 1 82 3 111097629 111097648 TATGAGGACTCATTGTCCCG 59 111097690 111098768 GCATTTACATACCCAGAATGGG 60 NA Rattus norvegicus 81 Ddx18 ENSRNOG00000025430 ENSRNOT00000037203 3 1 1 80 13 37524167 37524485 CTGATATTCAGTCTCAGCTGGA 60 37524108 37524126 AGGACTTGTACGCTTCCTG 59 NA Rattus norvegicus 81 Eif3c ENSRNOG00000018761 ENSRNOT00000025782 3 1 1 80 1 197965004 197965108 ATGACTCAATCAGTATGGAGAC 58 197964945 197964964 TCATCTTGCTGATGATGGAG 58 NA Rattus norvegicus 81 Map3k15 ENSRNOG00000025290 ENSRNOT00000043666 1 1 1 80 X 37651724 37651743 AAGAGATGCTGAACAATGGA 57 37649725 37651686 CATACTCATACTCTAAGGTGTCTC 58 NA Rattus norvegicus 81 AABR07036746.1 ENSRNOG00000052909 ENSRNOT00000071634 2 1 1 60 X 1543538 1543556 TACGAGATGAGGTCTGTGG 58 1543577 1543598 ACCCATTCTCCTGAATAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000085856 2 1 3 60 5 48084772 48084791 AAGGGATTTAGAACGCAGGA 59 48084731 48084752 AGTCATCTCAGTAATAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj2 ENSRNOG00000004720 ENSRNOT00000006254 1 1 1 60 10 99438676 99438696 TACGAAGTACCTAACACTCCC 59 99438712 99438736 GGATGTATTTCTTCTCTGCTAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anp32a ENSRNOG00000014846 ENSRNOT00000020443 2 1 1 80 8 67330179 67330199 GATGAAGAGGAAGAGGATGAG 57 67330239 67332752 GTAACCTTCTTCATCCTCCTC 58 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000036625 1 1 2 80 1 201906208 201906227 TCTACTGACAGGAGTTGTGC 60 201905334 201906167 TCTAACTCCTTTCCAGTTCCA 59 NA Rattus norvegicus 81 Cst6 ENSRNOG00000020455 ENSRNOT00000027727 1 1 1 80 1 220727879 220727897 CAGAGTCTCTGGAGACCAC 59 220727470 220727837 AAGTTGCAACGAAGTTTCTCC 60 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975,ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 3 4 5 80 17 39414106 39415020 TGCAGATCTTAGTTCACAACTG 59 39415061 39415079 TTTGCACGATTTGAATGGC 58 NA Rattus norvegicus 81 Dnaja2 ENSRNOG00000016251 ENSRNOT00000022573 1 1 1 80 19 22577713 22577731 ATGATAAGACAGCTGGCTC 57 22577775 22579842 GATGACCTCTCCTTCTCCA 58 NA Rattus norvegicus 81 Drc1 ENSRNOG00000024905 ENSRNOT00000036815 2 1 1 80 6 27450784 27450803 GCAAGAAGGAGAGTGAGGAG 60 27449835 27450744 GCAGGAGTTTAGTCAGTTTCAG 59 NA Rattus norvegicus 81 Adhfe1 ENSRNOG00000007069 ENSRNOT00000009462 2 1 1 80 5 9423908 9423928 ATTCCCTATCGAAGAATGGCA 59 9423695 9423866 CATCCATGAAGCTTCCGTC 59 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 1 2 2 80 3 146983368 146988571 CACAGCTCCTAGTGATAATAGAG 58 146988611 146988629 CCCTCTTCTTCCTCTTCCT 58 NA Rattus norvegicus 81 Clstn3 ENSRNOG00000011156 ENSRNOT00000015570 3 1 1 80 4 157063316 157063335 CGTGGCTTACATGAACACTC 59 157052371 157063273 CTAAAGCACTTGACAGCGG 59 NA Rattus norvegicus 81 Myo1c ENSRNOG00000004072 ENSRNOT00000036666 1 1 1 80 10 63818268 63818370 AACCTAACTGGAATCTCCGTC 60 63818411 63818430 CTTCTGCTTGCTGTCTTCAC 60 NA Rattus norvegicus 81 Prl5a1 ENSRNOG00000016307 ENSRNOT00000021982 3 1 1 87 17 38323680 38325477 ATTCAACCACATCCCTCAGG 60 38325527 38325545 TACATCTCGGTACACTGGC 59 NA Rattus norvegicus 81 LOC100911438 ENSRNOG00000048285 ENSRNOT00000071709 2 1 1 60 8 42002662 42002685 GTTAGTTTCTTCTATGGATCTGGG 59 42002704 42002722 CAGTCTCAGCAGAAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910120 ENSRNOG00000050642 ENSRNOT00000072645 1 1 1 60 8 42817243 42817264 ATCTATGTGTTGACAGTAGTGG 58 42817285 42817303 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gp5 ENSRNOG00000038540 ENSRNOT00000040884 1 1 1 187 11 74015004 74015900 TGCTTCAGACATGCTAAGG 58 74016051 74016069 TTCTGAAGAGCAGGATGTG 57 NA InUTR Rattus norvegicus 81 AABR07004984.1 ENSRNOG00000049516 ENSRNOT00000075518 1 1 1 80 1 173124914 173124933 CTGGAGGATGGGAACTACAC 60 173124852 173124874 GAGGATGACTCTAAGAACTGGG 60 NA Rattus norvegicus 81 Stard4 ENSRNOG00000020468 ENSRNOT00000027755 2 1 1 82 18 25993220 25993239 TTCAGAACACTCTGATCCAG 57 25992036 25993177 CCAAACGGTTACATCTTTCAC 58 NA Rattus norvegicus 81 Tmem100 ENSRNOG00000002434 ENSRNOT00000003297 2 1 1 80 10 77537348 77540252 CTGAGAAAGAGGCAATCCC 58 77540296 77540314 GTCTCGTTCAACTTCTGGG 58 NA InUTR Rattus norvegicus 81 AABR07069587.1 ENSRNOG00000050165 ENSRNOT00000071210 2 1 1 60 8 32604649 32604668 CATCAAGCACTCAAAGAGCA 59 32604689 32604709 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005886.1 ENSRNOG00000053539 ENSRNOT00000091049 1 1 1 92 1 204092255 204096266 CTACTTCGTGGAGTCAGCC 60 204096320 204096340 TTGGCCTTGAACTTGAAAGAG 59 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000065555 3 1 2 87 10 84979761 84979821 AGACAAGCTAGGTTGGCTG 60 84979871 84979890 CTGAAAGTGCATGACTCGAC 59 NA Rattus norvegicus 81 LOC100912388 ENSRNOG00000047324 ENSRNOT00000050959 1 1 1 60 8 42550458 42550478 TATTTCTGTGATCTCCTCCCT 58 42550498 42550518 CCTTATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912388 ENSRNOG00000047324 ENSRNOT00000050959 3 1 1 60 8 42550268 42550287 CATTCTCACATCAATGGCCT 58 42550307 42550328 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4e ENSRNOG00000061394 ENSRNOT00000078725 1 1 1 80 4 156273103 156273121 GGCAGAAGAAGTTACAGCC 59 156272969 156273061 AGCAATTCTTGACTGAACCTG 59 NA Rattus norvegicus 81 Olr241 ENSRNOG00000049483 ENSRNOT00000041658 3 1 1 60 1 172130376 172130399 TCATCTATAGCCTGAGAAACAGAG 60 172130417 172130436 ACTCTGACAGTTGCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sash1 ENSRNOG00000013160 ENSRNOT00000017688 1 1 1 80 1 2801588 2802658 CTGAAGCTCAAGAAAGGAGAC 59 2801528 2801546 TTTGTTGTTCAACAGGCCC 59 NA Rattus norvegicus 81 Kdm6b ENSRNOG00000037613 ENSRNOT00000067677 2 1 1 80 10 56005566 56005587 GAAACCGAAGATCAACACTGAG 60 56005401 56005528 TTGCTCTCCAAATAAATGCTGG 60 NA Rattus norvegicus 81 Zfp791 ENSRNOG00000023920 ENSRNOT00000037766 1 1 1 85 19 26243144 26243164 TCAGTACAGAATCCAAGAGGA 58 26239278 26239299 TTTCTCTATGCTGAGTAACCTC 57 NA DesignNoJunction Rattus norvegicus 81 Scrt2 ENSRNOG00000005148 ENSRNOT00000006833 3 1 1 261 3 147597074 147597092 TCTTCATTTCTGATGGGCG 58 147597317 147597335 ATAGACACGTAGGCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076535 3 1 7 168 1 215609111 215609742 CAGAATCTAGGCTCAGAGCT 59 215609871 215609891 GAGTAGCCTTGAAACTTAGGG 58 NA Rattus norvegicus 81 Il12b ENSRNOG00000004380 ENSRNOT00000005898 3 1 1 83 10 30045798 30045817 TTCTCCCTCAAGTTCTTCGT 59 30045863 30047382 CGCACCTTTCTGGTTACAC 59 NA Rattus norvegicus 81 Vamp8 ENSRNOG00000012748 ENSRNOT00000017301 2 1 1 99 4 100252665 100252684 TATGACCCAGAATGTGGAGC 60 100250430 100252604 CTTGAAGTGTTCAGACGTGG 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 1 2 2 80 1 164869915 164873138 CTGCCTCTAGATGTCTTTCAC 58 164873178 164873198 CACATAGACCATCTTGATGCC 59 NA Rattus norvegicus 81 Rpl5l1 ENSRNOG00000037220 ENSRNOT00000056238 3 1 1 60 10 112564605 112564625 CCATAGTACCAAACGATTCCC 59 112564565 112564583 CACCTCTGCATTGAACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra1 ENSRNOG00000003512 ENSRNOT00000004725 2 1 1 80 10 27337124 27337145 CCATGCACTTAGAAGACTTTCC 59 27330676 27337088 CTTCTGCTCTTGTATAAGCATAGC 60 NA Rattus norvegicus 81 RGD1559683 ENSRNOG00000009905 ENSRNOT00000013198 1 1 1 80 6 27309163 27323861 CTCATGCCCGGATATAAAGG 58 27309102 27309122 GTACTTGAAGGTGGTGTTACC 59 NA Rattus norvegicus 81 Tnip2 ENSRNOG00000013805 ENSRNOT00000018477 1 1 1 80 14 81496912 81496930 GGCCAAATGTCTGGATGAG 59 81496973 81499496 CTGCTTGTATGCTCTAGCTC 58 NA Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 2 2 2 80 4 78322451 78322469 AACTACAATGGAAGCCCAG 57 78322511 78325813 TCTTGTATTCCAAGCTCATGG 58 NA InUTR Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 3 2 2 89 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472116 100472135 CATGACGGAGGATTTGTACC 59 NA Rattus norvegicus 81 Rln1 ENSRNOG00000060867 ENSRNOT00000088193 1 1 1 136 1 247486051 247486069 CAAGTCATTCAGGTGTGCG 60 247483824 247485951 GATGGCACAACTTCTGCAG 60 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346,ENSRNOT00000079437 1 2 2 80 10 31000445 31000464 GAGCAACTGACTTATTCGGG 59 31000507 31003286 CACTTGTTGCTTGGGAAGG 59 NA Rattus norvegicus 81 AC115420.1 ENSRNOG00000040249 ENSRNOT00000059520 2 1 1 60 4 157416909 157416929 TATTGAGGAGAAAGAGGAGGA 57 157416951 157416969 CTCTTCCTCCTCTTCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car5b ENSRNOG00000029330 ENSRNOT00000047354 2 1 1 80 X 32244635 32255121 AATCGAGCCTTACCTCCAC 59 32255165 32255183 CCATCGGATGTTGATGGGT 60 NA Rattus norvegicus 81 Klc2 ENSRNOG00000020299 ENSRNOT00000041238 2 1 1 84 1 220495618 220495763 AAGAACAACCTGGCTTCCT 59 220495552 220495570 GAGCACGGGTAAGGATCTC 60 NA Rattus norvegicus 81 Mtch1 ENSRNOG00000000527 ENSRNOT00000000635 2 1 1 80 20 6938344 6938530 GTAAACAACTGTGGACTGCA 59 6938283 6938301 CAAGTACTTCCAGCAGTGG 58 NA Rattus norvegicus 81 Pax9 ENSRNOG00000008826 ENSRNOT00000011802 2 1 1 80 6 77608969 77608987 GTACCCTCTGTGAGTTCCA 58 77609030 77609051 CTGCTTATAGGACGTACCCT 58 NA Rattus norvegicus 81 AABR07072539.2 ENSRNOG00000048350 ENSRNOT00000073070 2 1 1 80 17 15194471 15196200 ACAATGGAGCACACTATTCC 58 15196241 15196261 TTCATAGGTTGTGATGGAGTC 58 NA Rattus norvegicus 81 AABR07072539.2 ENSRNOG00000048350 ENSRNOT00000073070 3 1 1 81 17 15194471 15196200 ACAATGGAGCACACTATTCC 58 15196241 15196262 TTTCATAGGTTGTGATGGAGTC 58 NA Rattus norvegicus 81 Klhl7 ENSRNOG00000010453 ENSRNOT00000013932 2 1 1 80 4 7550170 7550190 AACATGATTACCGCATAGCTC 59 7542816 7550130 TCCAACTGTAATCCTTTGGGT 59 NA Rattus norvegicus 81 LOC100912272 ENSRNOG00000050096 ENSRNOT00000070889 3 1 1 60 11 28597801 28597820 TTGCTACGTTCCAAGTTACC 58 28597760 28597778 GCCATAGGTCAGATAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000076918,ENSRNOT00000015576 1 2 2 60 5 74954787 74954806 CCAAGGTAGAACCCATTGAG 58 74954829 74954847 CTGAGTTCGATGTGAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gna12 ENSRNOG00000001235 ENSRNOT00000001654 1 1 1 80 12 15890525 15934048 CAACATCCTTAAGGGCTCG 58 15934092 15934110 TTCTCGTTCTCAGAGTGCT 58 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 1 2 2 80 9 9730273 9731765 ACAGGAGAAACTTAAGGTAAGGG 60 9731805 9731823 TAGTACCGCTTCTTGGCAG 60 NA Rattus norvegicus 81 Ctps2 ENSRNOG00000004257 ENSRNOT00000059031 3 1 1 80 X 33432418 33432437 TTTGGGAGGAACAATGAGAC 58 33417363 33432376 TCACCGTAAAGCTTCTTCAG 58 NA Rattus norvegicus 81 Epm2aip1 ENSRNOG00000043006 ENSRNOT00000056050 3 1 1 60 8 119525212 119525232 CGCTAAGGAAAGAAATCGAGG 59 119525252 119525272 GAGAAATGAACTGTTGTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 3 2 2 81 12 19520752 19525973 CATGAGAAACATGGCCCTG 59 19526017 19526036 TTGGTGGTAGAATCCAGAGG 59 NA Rattus norvegicus 81 Pyroxd1 ENSRNOG00000012472 ENSRNOT00000016794 2 1 1 80 4 176571614 176571635 GAGCTAAGCCAAAGTTAATCTG 58 176571675 176573741 TCTGAAATTCCTGAGCACTG 58 NA Rattus norvegicus 81 Gjc3 ENSRNOG00000001329 ENSRNOT00000001797 3 1 1 60 12 19166351 19166369 TAGGGAGGGTTTGGAAGAC 58 19166309 19166332 GAGGTTGACAAGTTCTTAAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcnt1 ENSRNOG00000050534 ENSRNOT00000074939 1 1 1 60 1 236581513 236581534 AAATTGTCAGGAAGCTCAAGTC 59 236581555 236581573 GGCATCTTCTCAGTTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 2 1 1 64 3 147982541 147985576 TAACTCAGGTGACCAAAGC 57 147982495 147982515 CCCTAAATTATCCTTCCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Itpka ENSRNOG00000005284 ENSRNOT00000007247 2 1 1 80 3 111551864 111551885 TACTTACAGTTACAGGACCTGC 60 111551925 111552040 CAGGTAAGTTCTGACACCCA 59 NA Rattus norvegicus 81 Olr145 ENSRNOG00000048582 ENSRNOT00000072668 1 1 1 60 1 169269647 169269665 TCATACTTCGTTCCGTGCT 59 169269605 169269623 GTGTTCAGAGTCTTCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1a ENSRNOG00000005916 ENSRNOT00000008238 3 1 1 80 6 94429438 94429459 ACAAGAAGAAAGCAGACAAGAG 59 94429496 94473654 TTGATCCTCTAGATCTGGTTTGG 60 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849 1 2 3 154 7 18564608 18564626 TGTTTATCACACCACTGGC 58 18559934 18564490 GAAAGAGACCAGTGTCCAG 58 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 2 2 2 80 15 28548762 28549194 CTTGTGTTATCAGGAGGAGC 58 28549237 28549255 CTCTCCATCGTCTCTTCGT 59 NA Rattus norvegicus 81 Dbnl ENSRNOG00000012378 ENSRNOT00000017375 2 1 1 80 14 86040951 86041264 CAGACAGGAATGGGAGTCTG 60 86041307 86041325 GTGGACATAGCCCTTTCCT 59 NA Rattus norvegicus 81 Angptl4 ENSRNOG00000007545 ENSRNOT00000010031 1 1 1 80 7 18629996 18630916 GACTTCAGATGGAGGCTGG 60 18629934 18629953 TTGTAGGCTTCCCAAGACTG 60 NA Rattus norvegicus 81 Acot13 ENSRNOG00000018415 ENSRNOT00000024878 1 1 1 80 17 42251213 42253378 TGAACATAACGTACATGTCACC 59 42253419 42253437 GCGTTCTTCCTTGCTTCAG 60 NA Rattus norvegicus 81 Timm44 ENSRNOG00000001058 ENSRNOT00000001409 1 1 1 80 12 2524688 2524706 CTGTGCGAACTAGTGAAGC 59 2524746 2525049 TACTGACTTCATCAAGACTCTCC 59 NA Rattus norvegicus 81 Msmo1 ENSRNOG00000032297 ENSRNOT00000044171 3 1 1 80 16 26873752 26873773 ATCATGTAATTCTTCTGTGGGC 59 26873811 26874957 GAGGGATATCATAACCACTGTG 58 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 2 2 2 93 15 48443505 48443523 TGAACAAGGTAGTGGTGGT 59 48434184 48443448 GTACGGACAACCATGATGG 58 NA Rattus norvegicus 81 Pdcd1lg2 ENSRNOG00000016136 ENSRNOT00000021614 2 1 1 81 1 247607146 247607165 AACTTCAGCTGCATGTTCTG 59 247607209 247610563 TGGGTTCCATCCAACTCAG 59 NA Rattus norvegicus 81 Slc35a5 ENSRNOG00000002069 ENSRNOT00000002853 2 1 1 80 11 60625220 60625239 CCATGGCTGTTATCTTCTCG 59 60625282 60631199 AGTTTAGATGCCGCTTCAG 58 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630,ENSRNOT00000007726 1 2 2 80 19 25163532 25163550 GAACTGCTCTTGGGAACCT 60 25162600 25163493 CTATTGGGATGGTATTTCTGACTC 59 NA Rattus norvegicus 81 Uqcrq ENSRNOG00000048174 ENSRNOT00000073964 1 1 1 80 10 38782195 38782213 ATTTCAGCAAAGGCATCCC 59 38780339 38782151 AGAACAGTACAAATGGCGG 58 NA Rattus norvegicus 81 Itgal ENSRNOG00000017980 ENSRNOT00000024404 1 1 1 80 1 198776682 198776701 CTCAGTCTCCTTCAACAGCA 60 198776743 198777341 TCAACCTTCATGAGGACCTG 60 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599,ENSRNOT00000004577 3 2 2 80 13 80697615 80697634 CTGTTATGGTTTGCACTGGG 60 80694777 80697578 GTCCTTTAAACTTATGGATTCCAGG 60 NA Rattus norvegicus 81 Rn60_15_0100.1 ENSRNOG00000051054 ENSRNOT00000076077 2 1 1 60 15 5652260 5652279 TTCACAGATTCCAGAAGACC 57 5652299 5652320 GAAAGACCCAAGAAATCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481,ENSRNOT00000021040 3 2 2 80 14 104497738 104497762 GAACAATCACCTCCAGTTATTACAG 60 104497798 104499080 TATTGAAGGACTCCTGGTCTG 59 NA Rattus norvegicus 81 AABR07054514.2 ENSRNOG00000052824 ENSRNOT00000073505 3 1 1 60 3 158809071 158809092 ATATGTTGGGTGTATGACACAG 58 158809110 158809131 GTAACACTCAGAAATGACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2ac1 ENSRNOG00000048329 ENSRNOT00000072826 1 1 1 81 9 23435081 23437488 ATATTCCAAAGGGCACTGAG 58 23435019 23435037 AAAGCATCTGGTGTTTCCC 58 NA Rattus norvegicus 81 Trim7 ENSRNOG00000002469 ENSRNOT00000003339 3 1 1 80 10 34195646 34198777 AAGAAGAGAAAGTGGAACTCTC 58 34198816 34198836 GTACGCTCTTTAGATCCAAGG 58 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 1 2 2 80 1 73659965 73659988 TATACCGCTGTTACTATAAGACCC 60 73659771 73659930 TATAGAGTCCTGTCACTACAAGC 59 NA Rattus norvegicus 81 Atg9b ENSRNOG00000023449 ENSRNOT00000029724 2 1 1 80 4 7320810 7320911 GGTCAAGTGATGGTTCCAG 58 7320954 7320973 CCTTTGGGAACAGATTCTGG 59 NA Rattus norvegicus 81 Tamm41 ENSRNOG00000007874 ENSRNOT00000010397 3 1 1 80 4 146948610 146948629 ACTCTGATTGAGGACCTCCT 60 146941631 146948569 CATCGATACAATCTTCACCGG 59 NA Rattus norvegicus 81 Ube2d2 ENSRNOG00000042523 ENSRNOT00000067702 2 1 1 111 18 28594901 28594919 TGGCAGGCTACAATAATGG 58 28595074 28595172 TAAATGCAACCTTAGGCGG 58 NA Rattus norvegicus 81 Ube2d2 ENSRNOG00000042523 ENSRNOT00000067702 3 1 1 112 18 28594902 28594920 GGCAGGCTACAATAATGGG 58 28595075 28595174 TGTAAATGCAACCTTAGGCG 59 NA Rattus norvegicus 81 Polb ENSRNOG00000019150 ENSRNOT00000026039 3 1 1 81 16 74248988 74249007 AGTCCAGTGGAGATATGGAC 58 74249050 74251149 CGATGTAACAACTTTGGCTG 58 NA Rattus norvegicus 81 Capn13 ENSRNOG00000032375 ENSRNOT00000047853 3 1 1 80 6 24610013 24610031 AGTCACACCCAATGAGAGC 60 24608115 24609969 CTTCCATCTCCTCCTGCTG 60 NA Rattus norvegicus 81 Lypd4 ENSRNOG00000020098 ENSRNOT00000027226 2 1 1 80 1 81731000 81731421 TCTTTACTGCCTTGTGCTG 58 81730938 81730957 CCAGTTATGCAAGGACACAG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464,ENSRNOT00000012634 3 2 2 80 14 85334677 85334695 TCAGACTGGATCCTACAGC 58 85333513 85334633 TGTCGGAATGAACTCTGCT 59 NA Rattus norvegicus 81 Ifit1 ENSRNOG00000019050 ENSRNOT00000025770 2 1 1 60 1 252944725 252944745 ACCTTAAAGTTCTCCTTGCTC 58 252944765 252944785 GTTTCTGCTTCATCTTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473,ENSRNOT00000076254 2 2 2 60 15 5808515 5808536 CAGAAAGACCCAAGAAATCCTC 59 5808556 5808575 CACAGATTCCAGAAGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0038.1 ENSRNOG00000060903 ENSRNOT00000089589 2 1 1 60 20 1666615 1666636 GTCATCTTAGATCCAAGACTCC 58 1666576 1666594 GACATGCTAGGTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 3 1 1 126 1 100810415 100810436 CTCGTAGACTATGGGAAACTCC 60 100809058 100810328 AATCAGAGAAGCCGTCACC 60 NA DesignNoJunction Rattus norvegicus 81 Smagp ENSRNOG00000048932 ENSRNOT00000073536 1 1 1 86 7 142245605 142246224 CATTGCAGTTGTTATAACCGTG 59 142245540 142245561 CTGCCTTTATTCTTGTACAGGT 59 NA Rattus norvegicus 81 Ccdc47 ENSRNOG00000009006 ENSRNOT00000012533 1 1 1 80 10 94395294 94395504 GATGCAGGATCTGAGTGAG 57 94395232 94395250 AGAATGGCCAAAGAGTCTG 57 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000037426 ENSRNOT00000056632 3 1 1 127 12 52672145 52672510 GACCTGACAGAGAAGATCAGG 60 52672684 52672702 GTGAATCTGTCGAACACGC 60 NA Rattus norvegicus 81 Uhrf1bp1 ENSRNOG00000000495 ENSRNOT00000049592 2 1 1 80 20 7462123 7462142 ATCTACAAGCTGGAAGACCC 59 7462185 7462370 GAAGCTCACCTTCAACCAG 59 NA Rattus norvegicus 81 Morn2 ENSRNOG00000030319 ENSRNOT00000047356 3 1 1 82 6 2971868 2972589 GGAAAGATGACAAGATGAATGG 58 2972630 2972650 CATGTTGTCCTTAAACTGTCC 57 NA Rattus norvegicus 81 LOC691162 ENSRNOG00000043039 ENSRNOT00000065471 1 1 1 87 5 162351304 162365283 GAGGGAAGTTCACCAAAGC 59 162365334 162365352 TAGTCTGGTCTGTGGTCTG 58 NA Rattus norvegicus 81 Tmtc2 ENSRNOG00000004585 ENSRNOT00000006086 3 1 1 80 7 47312910 47312930 ATCATTGAGATCCAAGACGGA 59 47276288 47312870 TCACTCTTACGACCTGTTAGC 60 NA Rattus norvegicus 81 RGD1563528 ENSRNOG00000023163 ENSRNOT00000031670 2 1 1 60 X 11101414 11101432 GTAGTAGCGCTAATGCGGA 60 11101372 11101393 TATAATCCCGAAACTCCTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss21 ENSRNOG00000047969 ENSRNOT00000073065 3 1 1 81 10 13216171 13216191 AACTCCACATACAAGTTTGCG 60 13216234 13219133 GTGGCAGACTCTCATCCTC 60 NA Rattus norvegicus 81 Smtn ENSRNOG00000019451 ENSRNOT00000026481 1 1 1 80 14 83769404 83769422 GACTTCCCAGTAGTGGGTC 59 83768502 83769360 CTTCCTCTGGCACCTTACC 60 NA Rattus norvegicus 81 Olr1742 ENSRNOG00000053860 ENSRNOT00000084564 1 1 1 60 20 1838265 1838283 CTTTGCTTCATCACCACCA 58 1838307 1838325 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1742 ENSRNOG00000053860 ENSRNOT00000084564 2 1 1 60 20 1838149 1838169 TTGTTCTCTACTTGTTGGGAC 58 1838190 1838209 TCAGCACCAATAGCTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maml1 ENSRNOG00000003268 ENSRNOT00000004361 2 1 1 82 10 35775689 35775710 ACTCCTTGTTTCTGATGAAACC 59 35773498 35775646 GGAAGGATTCTGCTCCTGG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 2 2 2 80 4 61524049 61526444 ACCCTGAAACAAGCAAGGA 60 61526486 61526506 GGAGTTCTTTGAACCATGGAC 59 NA Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 3 2 2 60 20 1889944 1889964 AACTCTTCATCTTCATGTCCC 58 1889986 1890004 AAGGCCATCACTGTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2d ENSRNOG00000016940 ENSRNOT00000023139 2 1 1 80 1 211225679 211226719 AACAAGAGAATAAAGGCCGC 59 211226761 211226780 CAAACTCTGGCTCATGACTC 59 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 2 2 2 80 5 115350461 115350479 TGTAGACTGCCTCAACCTG 59 115343913 115350420 ATAGACATGATCTTGGGCAGAG 60 NA Rattus norvegicus 81 Emilin1 ENSRNOG00000008246 ENSRNOT00000010932 1 1 1 90 6 26821893 26822318 AGAGACAGGTGTATTCACTGC 60 26821823 26821841 TACTGCCTCCACTTTCTCG 59 NA Rattus norvegicus 81 Emilin1 ENSRNOG00000008246 ENSRNOT00000010932 3 1 1 92 6 26821893 26822318 AGAGACAGGTGTATTCACTGC 60 26821821 26821840 AGTACTGCCTCCACTTTCTC 59 NA Rattus norvegicus 81 Snapc5 ENSRNOG00000010156 ENSRNOT00000013490 3 1 1 94 8 69127812 69129193 GTCTCAAGGTCGAAGAATTGG 59 69129248 69129267 ACATAACTGTTCAGGTGCAG 58 NA Rattus norvegicus 81 AABR07052753.1 ENSRNOG00000009376 ENSRNOT00000012416 2 1 1 85 3 72786499 72786517 AACATGAAAGTGGCCTCTG 58 72786430 72786453 TCTGAGACCTCTTTATTCAAGG 57 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000048154 1 1 2 60 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53233493 53234791 CTCTAAGAAGTTTCTCTTCCTACC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1217 ENSRNOG00000047328 ENSRNOT00000042784 3 1 1 60 8 40765354 40765372 TGGGTGTTTATGTGATGGG 57 40765396 40765414 AGGCTTAGCATACAACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r35 ENSRNOG00000033755 ENSRNOT00000049179 2 1 1 60 1 72128923 72128944 TGAGCACTTATCAGTTTGTCAC 59 72128884 72128904 CTACTGAGTATCACCCTAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912399 ENSRNOG00000013177 ENSRNOT00000017968 2 1 1 80 2 43331871 43332514 CGCCTGAGGTACTAAGAGG 59 43331809 43331828 AGGCCATTTCTATAATGGCG 58 NA Rattus norvegicus 81 Cel ENSRNOG00000010406 ENSRNOT00000014572 3 1 1 80 3 7139097 7139116 CCCAGGATGATACCTATGGG 59 7138797 7139055 CATGAGACACTTGCTTCCTG 59 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 2 2 2 80 1 88038173 88039265 GACACTCAAGACTCTGCTG 58 88038111 88038130 TTCGTCTTCTTCAGGTTGTC 58 NA Rattus norvegicus 81 Phip ENSRNOG00000008652 ENSRNOT00000011864 1 1 1 80 8 90456161 90456436 ACATCACTACAGTTCTCACCA 59 90456101 90456119 AAAGCAAATAGTGCCGTCC 59 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 3 2 2 80 3 129078446 129146884 CCCATGAAGACAATCGTCAG 59 129078385 129078406 GATGTTGTCGAAATCCTCTAGC 59 NA Rattus norvegicus 81 Calm2 ENSRNOG00000030871 ENSRNOT00000046240 3 1 1 60 15 65507740 65507760 ATCAATGAAGTAGATGCCGAC 58 65507700 65507719 TCATTGTCAGGAATTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680370 ENSRNOG00000043402 ENSRNOT00000066493 1 1 1 97 X 43871255 43878748 CATTATAGGCAATTGACGAGAG 57 43871179 43871197 ATGCTATGGTACTTGCAGC 58 NA InUTR Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000073487 2 1 2 235 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116965068 116965090 TGTAGACTTTACTAGCCATCGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC102548013 ENSRNOG00000023089 ENSRNOT00000050748 3 1 1 104 9 50814205 50814224 TTCCAAATTCCTCGAGTAGC 58 50813531 50814141 GTGGGATAATGTATTAAAGGCC 57 NA Rattus norvegicus 81 Olr731 ENSRNOG00000006819 ENSRNOT00000008924 2 1 1 60 3 78941782 78941800 GCTTTGTTCTTTGTGCCCT 59 78941740 78941761 CTATGGACAGAGTAGATGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bre ENSRNOG00000004364 ENSRNOT00000005855 3 1 1 80 6 25693518 25737830 CTTGTACACATTGACCTGCC 59 25693457 25693477 GTTGGTAAAGTGGTAGACGGA 60 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000092196,ENSRNOT00000008898 3 2 2 197 5 107857238 107857256 GTAACAATCTCAAGGCCGG 59 107853697 107857077 TCATCATGACCTGGATCGG 59 NA InUTR Rattus norvegicus 81 Hectd1 ENSRNOG00000006905 ENSRNOT00000008459 1 1 1 80 6 72529349 72529367 TGAACCGGATGAGGAAGAC 59 72528839 72529308 CGTCTCAGAATCATAACCTCCT 60 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064,ENSRNOT00000087121 2 3 3 90 10 56715632 56715906 TTCATCCCAAAGCATGCAG 59 56715960 56715978 CTTGAACTCCATCAGGGTG 58 NA Rattus norvegicus 81 Obp1f ENSRNOG00000045757 ENSRNOT00000045436 3 1 1 80 X 45284313 45284332 TTTCTGCTGATTGTTCTTGC 57 45283806 45284270 CCCATTAACCTCTGAGGGA 58 NA Rattus norvegicus 81 AABR07069676.1 ENSRNOG00000047150 ENSRNOT00000072224 3 1 1 81 8 37449413 37450254 CTCCCTTCAAGCTTTGCAG 59 37449350 37449371 CTGGCATATAAGTCTTCCAGTC 59 NA Rattus norvegicus 81 Smad1 ENSRNOG00000018483 ENSRNOT00000025079 2 1 1 80 19 32232527 32232546 TATGGACACGAACATGACGA 59 32232586 32236109 TAAGCAACTGCTTGAACATCTC 59 NA Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378,ENSRNOT00000041373 2 2 2 60 6 73361027 73361046 TCCCTACAACAACTACCCAG 59 73361068 73361087 TGGACTATATGGAGGTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 2 3 3 91 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738156 97738174 GACCATGACATTCAGCTGC 59 NA Rattus norvegicus 81 B4galnt1 ENSRNOG00000004839 ENSRNOT00000046099 2 1 1 80 7 70456792 70456813 ACCATCCTCATAAGACATCCTC 59 70456853 70456995 ACTGATGTTGTACTGGGCTC 60 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 3 1 1 61 X 48779565 48792366 GATTGGCAGATCGCTACTC 58 48792388 48792409 AATGCAATGAGTATGATGGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Noxa1 ENSRNOG00000009286 ENSRNOT00000012375 1 1 1 80 3 2304541 2304560 TAGAAGCAATCTCCAAACGG 58 2304293 2304498 GTGGTACCTGTTTCTGCAC 59 NA Rattus norvegicus 81 Paqr7 ENSRNOG00000022054 ENSRNOT00000022713 2 1 1 80 5 152708814 152708832 CTTTATCTGCGACTCCAGC 58 152708874 152711611 TCCATCCATATTCTAGGCCTG 59 NA InUTR Rattus norvegicus 81 LOC100912263 ENSRNOG00000049014 ENSRNOT00000071400 1 1 1 80 1 71342324 71342342 AAGGAGAACAGAGTGAGGC 59 71341369 71342282 GATTATGGACCACTTCTGGTG 59 NA Rattus norvegicus 81 Pabpc5 ENSRNOG00000003354 ENSRNOT00000004462 3 1 1 60 X 92131689 92131708 GCTATCTGGCACATGAATGG 59 92131730 92131749 TGAATCGGCCAACATATACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000077072 1 1 2 91 15 51757117 51757557 CTCAGATGGCTACAGCCTC 60 51758430 51758448 TCAGACCGATGTCCATCAC 59 NA InUTR Rattus norvegicus 81 Akt1s1 ENSRNOG00000020289 ENSRNOT00000027478 2 1 1 80 1 100849163 100849181 GAGGAAGATGAAGACGAGC 58 100849222 100850066 CATGAAGAGACCTCCATTATCG 59 NA Rattus norvegicus 81 Akt1s1 ENSRNOG00000020289 ENSRNOT00000027478 3 1 1 80 1 100849164 100849182 AGGAAGATGAAGACGAGCC 59 100849222 100850067 TCATGAAGAGACCTCCATTATCG 60 NA Rattus norvegicus 81 Tbc1d7 ENSRNOG00000014019 ENSRNOT00000019089 3 1 1 80 17 23790801 23790819 GAAAGTTGGCTTTCGTGGA 59 23789947 23790757 AGCTTCTCAATGTCCAACC 58 NA Rattus norvegicus 81 Olr1737 ENSRNOG00000048048 ENSRNOT00000040388 1 1 1 60 20 1782158 1782176 TCACTCCTGCTCTCAATCC 59 1782200 1782218 AATGCACTCCTCACTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0d2 ENSRNOG00000006926 ENSRNOT00000009334 3 1 1 80 5 33846957 33852467 CCCATTCTTGAGTTTGAGGC 59 33846896 33846917 GTCTTCTTTGCTCAGTTCAGTG 60 NA Rattus norvegicus 81 Braf ENSRNOG00000010957 ENSRNOT00000014604 1 1 1 80 4 67450735 67450755 GGTTATAAGTTTCACCAGCGT 59 67449683 67450696 GACAAACAGCAAATCAAGTTGG 59 NA Rattus norvegicus 81 Eef1e1 ENSRNOG00000016390 ENSRNOT00000022065 2 1 1 80 17 26788621 26788641 CTACCTTGCAGGACATAACAC 59 26788680 26795141 ACTGTCAGGTCAACTATAAAGC 58 NA Rattus norvegicus 81 Olr272 ENSRNOG00000059313 ENSRNOT00000090059 1 1 1 60 1 172813965 172813986 CCTGTTCTGATAATGATGTCCT 58 172814007 172814025 ACAATGATAGAGCCAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Catsperd ENSRNOG00000048818 ENSRNOT00000071207 3 1 1 80 9 10422217 10423016 TGTATCTAGGGCAGAGGGT 59 10422155 10422174 CCATTGACTTCGGAATGGTG 59 NA Rattus norvegicus 81 Tacr3 ENSRNOG00000009372 ENSRNOT00000012473 1 1 1 80 2 240021815 240021834 CTTCCAGAACTTCTTTCCCA 58 240021877 240052587 GCCATATACCTGTCCACTG 57 NA Rattus norvegicus 81 LOC100909754 ENSRNOG00000047153 ENSRNOT00000074462 1 1 1 60 10 61067242 61067263 TTCTTTGGGACAGTAATAAGGG 58 61067282 61067302 CCACTGAGTTAGAGGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpine3 ENSRNOG00000009814 ENSRNOT00000051307 1 1 1 84 15 45840476 45840494 CTCACAGCCAGAGTCATCC 60 45840539 45849487 TTTGGATCCTAAACCTAGGGAG 59 NA Rattus norvegicus 81 Prr30 ENSRNOG00000025726 ENSRNOT00000009916 3 1 1 88 6 26780464 26780482 CTGCTCAGACTGGAATGCT 60 26780616 26781078 AACACAGTCTGTAGGACCAG 59 NA InUTR Rattus norvegicus 81 N4bp3 ENSRNOG00000021731 ENSRNOT00000032386 1 1 1 130 10 34999076 34999580 TTTACTCAGGTGCTCGAGG 59 34998964 34998982 ATAAACAGCTGCAGCTGGA 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000075860 3 1 4 81 3 57260257 57267221 TATTCACCCTGACAGGATGC 60 57260195 57260215 ATCCCGAAACAATAGCATTCC 59 NA Rattus norvegicus 81 Kcnh8 ENSRNOG00000058626 ENSRNOT00000087331 1 1 1 80 9 3697665 3697684 CGGTTATGAAAGGATTGCTG 57 3510046 3697622 AGTTGCTATGTGTTCCGTC 58 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 2 1 1 72 1 89132655 89132841 TCTACTTCAGCATCCAGGC 59 89132601 89132619 CGAGATGAGTTCCGGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mthfd1 ENSRNOG00000005602 ENSRNOT00000008374 1 1 1 80 6 99317297 99317318 CTGAAGAAATTTAAGCCAGGGA 59 99317358 99317574 AGCAATGTCACTTGGTACAG 58 NA Rattus norvegicus 81 Mthfd1 ENSRNOG00000005602 ENSRNOT00000008374 2 1 1 80 6 99322213 99322393 CCAGACAGACAAGGCTCTC 60 99322437 99322455 CTGCGGATTTGGATGTCAG 59 NA Rattus norvegicus 81 Mrgprx1 ENSRNOG00000037156 ENSRNOT00000056081 1 1 1 60 1 104024600 104024619 CTGAACGGAAGCAACTACAC 59 104024559 104024580 AACTCATGACTTGGATCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 2 2 6 80 1 262013549 262013568 ACGGATGAGGAATTTGAGGA 59 262012003 262013506 CAGACAAGCCACAATCTCC 59 NA Rattus norvegicus 81 Dhrs9 ENSRNOG00000058568 ENSRNOT00000080525 1 1 1 92 3 55638575 55641847 CAATGACAGCTTAAGGCGG 59 55641903 55641921 ATTGGATCTGCCAGTCCTG 60 NA Rattus norvegicus 81 Adck4 ENSRNOG00000020848 ENSRNOT00000028290 3 1 1 80 1 84053286 84053393 TGAAGATCCAGTACCCAGG 58 84053437 84053455 CCACACTCATCTTGAGCAG 58 NA Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000075866,ENSRNOT00000065194 2 2 2 60 X 63165677 63165696 AACAACAGTATGCGTGTTCC 59 63165636 63165655 GCTGAGTGTCATTAACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map6 ENSRNOG00000027204 ENSRNOT00000034389 2 1 1 97 1 164227992 164271772 CTCCTACAGGAACGAATTCAG 58 164271830 164271849 GAACCATCTTGTCATCTGGG 58 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 2 2 2 84 19 25953024 25953173 ATTTCTGGCTCTGTTCCCT 59 25952827 25952846 TCTCATACTCAGAGCCAGTC 58 NA Rattus norvegicus 81 Cdip1 ENSRNOG00000003328 ENSRNOT00000004999 1 1 1 230 10 10986705 10986725 CTTATCCAGGAGGTCCTACAG 59 10987157 10987775 GAGGGTAGAAACCTGCAGG 60 NA DesignRelaxed Rattus norvegicus 81 Tnp2 ENSRNOG00000002566 ENSRNOT00000003455 1 1 1 80 10 4954213 4954232 AAAGTGAGCAAGAGAAAGGC 59 4954274 4954486 CTTGTATCTTCGTCCTGAGC 58 NA Rattus norvegicus 81 AABR07012314.1 ENSRNOG00000043111 ENSRNOT00000045938 2 1 1 85 2 192978178 192978196 TCTGGATGCTGTAGCAGTG 60 192978069 192978087 CAGCAATCTCCAGACTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 1 2 2 80 15 41142349 41165694 CTATGTTCCTGACACTGCCT 60 41165731 41165755 GACATGAGGTATGAGTAATACTTGG 59 NA Rattus norvegicus 81 Gmfg ENSRNOG00000019838 ENSRNOT00000026891 3 1 1 84 1 85317196 85317215 GTGCTAGAAGACGAATTCCA 58 85314312 85315883 TATAGACCACGAACCTGGG 58 NA Rattus norvegicus 81 RGD1562400 ENSRNOG00000046628 ENSRNOT00000075318 2 1 1 60 1 172322226 172322244 TGCTCCTTTGGTTGAACTC 58 172322184 172322205 AAATGAGGTAACAACTACAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hn1 ENSRNOG00000003661 ENSRNOT00000004862 3 1 1 145 10 104064365 104064383 AACATCTTTGGGACACCTG 58 104062213 104063391 TCACTTTCTCCCTTGAGGT 58 NA Rattus norvegicus 81 AABR07012329.1 ENSRNOG00000009602 ENSRNOT00000056479 2 1 1 174 2 193572438 193572456 CCTCAACCACTCACAGGAG 60 193572660 193572678 CTGTCAATGCTTGTGGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Mthfr ENSRNOG00000008553 ENSRNOT00000011384 3 1 1 80 5 164857834 164858720 TATGTCTTCCAGAAGGCCT 58 164858763 164858782 ATACGTCTTCAACACTTGCA 58 NA Rattus norvegicus 81 Slc22a25 ENSRNOG00000017964 ENSRNOT00000024234 2 1 1 80 1 224600818 224613057 GCCTCAAGAAATGCAGATCC 59 224600757 224600776 AGAGCACTGCTAACAGAGAC 60 NA Rattus norvegicus 81 Nabp1 ENSRNOG00000015416 ENSRNOT00000021403 2 1 1 80 9 55050447 55050678 TTTATTGTCCTGGAGATAGGACG 60 55050715 55050736 CGTTCTATCAGCTACTTTGCAG 60 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000077573,ENSRNOT00000088815 3 3 3 80 3 72431988 72432006 ACTACAGCTCTGTTCTCCG 59 72431705 72431945 TCATGATAGGCATCTCCACG 60 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000088996 2 1 2 81 13 90521525 90522246 TATGCAGCAGTTACAGGAC 57 90522453 90522471 ATCCAGGTCAAAGTTGAGG 57 NA Rattus norvegicus 81 Adam12 ENSRNOG00000018384 ENSRNOT00000024974 3 1 1 80 1 206074018 206187199 CTTGGAGAGGAATGAGGGA 58 206073956 206073975 GTGAAGGAGACATCACTACC 58 NA Rattus norvegicus 81 Pigq ENSRNOG00000020140 ENSRNOT00000027353 2 1 1 80 10 15293278 15293296 CCTCATCAATTCCCTCCCA 59 15291754 15293234 CTGAACTTCACACCAGCTG 59 NA Rattus norvegicus 81 Rgl2 ENSRNOG00000000474 ENSRNOT00000000554 3 1 1 84 20 5460837 5460855 TATGACCTCCGACCTAACC 58 5460660 5460789 AGGATACACGGTGACTCTG 59 NA Rattus norvegicus 81 Vom1r22 ENSRNOG00000025949 ENSRNOT00000038190 1 1 1 60 1 61626045 61626064 CAAGCCATCACTATTAGCCC 59 61626004 61626025 CTTGTCGTCTTCCTTTAAACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agl ENSRNOG00000016214 ENSRNOT00000055735 1 1 1 80 2 219828369 219828390 TTTAGCAAAGTGTTTAGGACCC 59 219827491 219828330 TGAATCATGTTGTAGCCTGAC 59 NA Rattus norvegicus 81 Psmd13 ENSRNOG00000014109 ENSRNOT00000019642 2 1 1 80 1 213642782 213642800 AGCAAGAAAGAGCCTTCAC 58 213642843 213642937 GATGCATGAGAAGTTCTCCA 58 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073,ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 2 4 4 80 3 8475827 8475847 CTGCTGTTACTACTGCAAGAC 59 8475888 8475992 CTTTGCTTGAGCCTTCTCAC 60 NA Rattus norvegicus 81 Trim16 ENSRNOG00000003219 ENSRNOT00000065335 2 1 1 81 10 49245813 49248294 CTTCCTGGAGGAGTACTGC 59 49248338 49248357 GAGTTTATCCTTCAGCCCGA 60 NA Rattus norvegicus 81 Hsd17b14 ENSRNOG00000020949 ENSRNOT00000028436 3 1 1 81 1 101542373 101543322 GGAAGGAGATTTACAGACTCTG 58 101543364 101543382 GTAGCCGGCATTATTCACC 59 NA Rattus norvegicus 81 Rn60_19_0291.1 ENSRNOG00000030864 ENSRNOT00000050750 1 1 1 60 19 17967968 17967987 TAAGGAAGAACAGGTCCTCC 59 17968164 17968182 TTACCTAGCAAACGCAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 2 2 2 80 9 65659959 65661737 GGAAAGATGTCCTCGAGGT 59 65661779 65661799 CTCGGGTTGTCTTTATTGCTC 59 NA Rattus norvegicus 81 Rn60_19_0521.1 ENSRNOG00000057215 ENSRNOT00000086367 3 1 1 60 19 41207713 41207731 AAGGAGTCACCAAACAAGC 58 41207671 41207689 CCGTCTATGTGGTAACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 3 2 2 69 2 61691905 61692308 AGGAGAACAACCAAATCTGG 58 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0633.2 ENSRNOG00000051233 ENSRNOT00000076550 1 1 1 60 X 63245875 63245893 CAAAGAACCCTGATGGCAC 59 63245833 63245853 TTCTTTCTAGGGATAGCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC287167 ENSRNOG00000045989 ENSRNOT00000052292 1 1 1 80 10 15577930 15577948 CATCAAGAAAGCCTGGGTG 59 15577753 15577887 AAGACAATGAACAACCTCCC 58 NA Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000079828,ENSRNOT00000066895 2 2 2 93 10 82489382 82489400 CAGAGTCCTCCAGATCCAC 59 82489139 82489327 TCTGAACAACCTGACTGTAGG 60 NA Rattus norvegicus 81 Serpinb1a ENSRNOG00000016581 ENSRNOT00000059854 1 1 1 80 17 32905859 32905877 TGGAGCATCTCACACTCTG 59 32905919 32906931 GAAGTCAAGAACTCAGGAAGG 58 NA Rattus norvegicus 81 Mycl ENSRNOG00000014259 ENSRNOT00000019101 3 1 1 139 5 140693251 140693269 AGTCTGGAAGCCAGTAACC 59 140696263 140696281 GATCGTCTCTTCTCCACCG 60 NA DesignNoJunction Rattus norvegicus 81 LOC691995 ENSRNOG00000059827 ENSRNOT00000082511 1 1 1 68 10 57670100 57670118 ATATGGCTGGATGCTGGAG 59 57669972 57669990 TCCGTTCTGCTTACTCAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC691995 ENSRNOG00000059827 ENSRNOT00000082511 2 1 1 69 10 57670100 57670118 ATATGGCTGGATGCTGGAG 59 57669971 57669989 GTCCGTTCTGCTTACTCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 1 1 1 66 19 25947328 25948685 GAGAGCAGCATATTGCAGAG 59 25948713 25948732 TTCTGCTTTCTCCAGTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Olr514 ENSRNOG00000046997 ENSRNOT00000040055 3 1 1 60 3 73949916 73949935 TTATCCTCACAGCAGTTCTC 57 73949875 73949894 GTTGAGAAAGCCTTGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed7 ENSRNOG00000003691 ENSRNOT00000004942 2 1 1 80 18 40583958 40583977 TTTCCAAGTTGGAGAAGACC 58 40581917 40583916 ACACAAGCAGATTCCATCTG 58 NA Rattus norvegicus 81 Frmd4b ENSRNOG00000007764 ENSRNOT00000010717 2 1 1 80 4 129677384 129677404 CCATAAACGAATACCGAATCC 57 129674549 129677344 ATGGAATGATGTCTTCTGGAG 58 NA Rattus norvegicus 81 Rn60_X_0639.2 ENSRNOG00000051228 ENSRNOT00000077027 2 1 1 60 X 63821067 63821085 ACCTGAAGCCTTCAGTCTG 59 63821109 63821127 TTCAGGACTCAAAGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911893 ENSRNOG00000048946 ENSRNOT00000074948 1 1 1 60 8 18037751 18037771 GAACTGAGAAACCAAACAACC 58 18037711 18037730 CAGGATCACTTGTCAATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink1 ENSRNOG00000013410 ENSRNOT00000017969 1 1 1 89 18 38183278 38185703 TTTAGCAGGTAACACTACAGC 58 38181742 38181761 ACAGGATCATAATCCCTGGG 59 NA Rattus norvegicus 81 Prrg1 ENSRNOG00000026044 ENSRNOT00000066663 3 1 1 140 X 45732517 45753740 ATGGGAAGAGAATGCTGGG 60 45719067 45719085 CCATTTGCTCTTGGGTAGC 59 NA InUTR Rattus norvegicus 81 Cfap44 ENSRNOG00000028077 ENSRNOT00000059680 3 1 1 80 11 61196529 61196547 GAAACTCGTACAACAAGCC 57 61193632 61196486 TTGCTCTTGTAAAGCTCCTC 58 NA Rattus norvegicus 81 Lmnb1 ENSRNOG00000013774 ENSRNOT00000019351 2 1 1 80 18 51813795 51813816 AAATTGGAGACACATCAGTCAG 59 51813856 51818353 CAGCCCATACTGTAACAGTC 58 NA Rattus norvegicus 81 Cml5 ENSRNOG00000015768 ENSRNOT00000021120 2 1 1 97 4 117531188 117531206 AAACTTTGTCCCTGACACC 58 117507550 117531128 ACTTTCCTTAAGACCTTGGG 57 NA InUTR Rattus norvegicus 81 RGD1560207 ENSRNOG00000030048 ENSRNOT00000045901 2 1 1 80 X 46844499 46844518 TCCTGCTGAATTTGGATGGA 59 46836825 46844456 TCAACAATGCCTTTGGCTG 59 NA Rattus norvegicus 81 Grik3 ENSRNOG00000008992 ENSRNOT00000045513 1 1 1 80 5 143693475 143698155 TTCGTCATTGCCAGATTCAG 59 143698197 143698216 GTTATTCTCCACCACCTCAG 58 NA Rattus norvegicus 81 LOC100912340 ENSRNOG00000032383 ENSRNOT00000042974 1 1 1 60 8 42511522 42511543 GGCTTTATTAAATGGCTCTGTG 58 42511564 42511582 AGGCTGGTCTGTTAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912340 ENSRNOG00000032383 ENSRNOT00000042974 3 1 1 60 8 42511798 42511819 ATATGTTGGGTGTATGACACAG 58 42511837 42511858 GTAACACTCAGAAATGACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307537 ENSRNOG00000033763 ENSRNOT00000048146 2 1 1 80 17 30642149 30653576 ACCATCATTGTCAGGTGGA 59 30642087 30642106 AAGTGCTGACAGTCTTTGGA 60 NA Rattus norvegicus 81 Jam3 ENSRNOG00000009149 ENSRNOT00000012247 1 1 1 89 8 28148510 28148528 CAGCAGTAAACAGGATGGA 57 28148067 28148375 CTGAAGTCACCCTCTTCAC 58 NA Rattus norvegicus 81 Lpcat3 ENSRNOG00000012269 ENSRNOT00000017090 3 1 1 80 4 157218486 157218507 CATTGTGTCTTGACATTGAAGC 59 157218676 157219087 AGAGGACAAGGAGTTCCTG 58 NA Rattus norvegicus 81 Rn60_6_0964.4 ENSRNOG00000056507 ENSRNOT00000083827 2 1 1 60 6 86813729 86813749 GGTCATTTAGGTGCATAGTCC 59 86813767 86813789 CTCTTCAGCCACTTTCTTTATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691670 ENSRNOG00000049919 ENSRNOT00000059662 1 1 1 158 15 35164170 35164398 CTATTAAAGCTGAAGAGAAAGGCC 60 35164035 35164054 CTCTTGTAAGAGGGCAGGTC 60 NA Rattus norvegicus 81 Vom1r53 ENSRNOG00000049902 ENSRNOT00000038977 2 1 1 60 1 66398477 66398498 CATTGGCTGATTACCATGTCTG 60 66398519 66398537 CAAAGGGACTGAGTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcn1 ENSRNOG00000013452 ENSRNOT00000018074 2 1 1 87 3 95413133 95413151 CTACTCGGGAGGAGTTCAC 59 95411408 95413083 ATATCCTCCAGGGTTTCCAG 59 NA Rattus norvegicus 81 Sgca ENSRNOG00000003998 ENSRNOT00000005381 2 1 1 80 10 82780247 82780265 GCAGTCCCTATAACCCTGG 59 82780013 82780203 AGGCTGTGACCTCAATGAC 60 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 2 2 2 98 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745381 107754090 CAGGATGAAGGGTTGTGGT 60 NA Rattus norvegicus 81 Zkscan2 ENSRNOG00000024245 ENSRNOT00000020281 3 1 1 80 1 193457710 193457728 GGAAACTTCCACTCAGGAC 58 193454570 193457668 AGAAGAGTGAGCATTCTTAGG 57 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 2 2 2 80 14 108443514 108443535 GAAGCCTACAAGTGGATAACTC 59 108443575 108446270 CACTTCGAACAAGCTCTTCC 59 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 1 2 2 80 15 56772099 56772119 TACTCCCTGACAACTTCATCG 60 56772156 56776140 TATGATCATAACCCTCTTGTAGCC 60 NA Rattus norvegicus 81 Sec24d ENSRNOG00000014872 ENSRNOT00000064809 2 1 1 80 2 227516631 227516649 CACTATGAGAAGCCAGAGC 58 227516692 227522936 GGGTGGTTTATTCTTTCTGC 57 NA Rattus norvegicus 81 Gtpbp3 ENSRNOG00000023403 ENSRNOT00000060355 1 1 1 80 16 19899776 19900011 CTAGTGAATCTGCTCAGCCA 60 19900053 19900072 AGGAGTCTCCAAGATGTCAC 59 NA Rattus norvegicus 81 Ap5b1 ENSRNOG00000026114 ENSRNOT00000036185 1 1 1 80 1 220948854 220948872 GCTGAAGGTGAGGATTTGG 59 220948914 220949037 TAAGGAAACCTTGATCAGCTC 58 NA Rattus norvegicus 81 Mboat1 ENSRNOG00000027125 ENSRNOT00000036978 2 1 1 80 17 36063081 36066897 CCAACCATCAGTTTATACAAGTCC 60 36063024 36063042 TTTGACTGGCAGGAGAAGG 60 NA Rattus norvegicus 81 AABR07071891.1 ENSRNOG00000049295 ENSRNOT00000032991 1 1 1 80 1 84613496 84613514 TGCTACTCAGAAGGTCCTC 58 84613558 84615099 GAAAGGCAACTTCCTACCA 57 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 2 2 2 80 10 63657874 63658057 CAACTTTATGGGTGTTCGAC 57 63658100 63658118 ACCTCATGGTAGAACTCCT 57 NA Rattus norvegicus 81 Slc16a2 ENSRNOG00000002832 ENSRNOT00000040637 3 1 1 96 X 74580706 74585255 GATATACTTGCAGGTCCTCTC 58 74580630 74580648 GAGGCAGACAACGATAAGG 58 NA Rattus norvegicus 81 Gltscr1 ENSRNOG00000011262 ENSRNOT00000015059 1 1 1 80 1 77872685 77872706 TGTTCATTCAGGAGGAGAAGAC 60 77870899 77872647 AGGAAGACACATACTCATCAGG 59 NA Rattus norvegicus 81 Olr285 ENSRNOG00000032092 ENSRNOT00000050657 2 1 1 60 1 173392760 173392779 TTTGATTGTCATGGTTCCCT 57 173392719 173392743 GGTGAAGAGAATTCGAGTATAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xbp1 ENSRNOG00000010298 ENSRNOT00000014044 3 1 1 80 14 85754745 85754764 GCGAGATAGAAAGAAAGCCC 59 85754806 85756278 AGCTGGAGTTTCTGGTTCTC 60 NA Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217,ENSRNOT00000055194 3 2 2 91 10 89913363 89913381 CAGACTTCATTGACCAGGC 59 89908375 89908393 GATGACTAGCGTTGGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Tp53i11 ENSRNOG00000008738 ENSRNOT00000057001 2 1 1 96 3 82092220 82092238 AGACAGATCTTGTGAGCCG 60 82092298 82092811 ACCTGGCTGATCTTTGACC 60 NA Rattus norvegicus 81 Pank1 ENSRNOG00000018944 ENSRNOT00000067822 2 1 1 80 1 253134781 253147932 TCAGAATGATTGCGGACCT 59 253134719 253134737 CCGAGTCAACGTAAAGCAG 59 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829,ENSRNOT00000066313 2 2 2 81 17 43494057 43494075 TTACACTTGCCAACTCGAC 58 43480966 43494017 CCATAATATCTGGGAGCAATATCC 59 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829,ENSRNOT00000066313 3 2 2 82 17 43494057 43494076 CTTACACTTGCCAACTCGAC 59 43480966 43494017 CCATAATATCTGGGAGCAATATCC 59 NA Rattus norvegicus 81 Tox ENSRNOG00000010777 ENSRNOT00000014661 1 1 1 82 5 19894495 19902190 CATGCAGCAAGGATTTACTCTC 60 19894434 19894452 CTTGGGTGACAACTTGTGC 60 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 2 2 2 73 6 51015567 51017093 TAAAGCAACAGCGAACAGG 59 51015512 51015531 TGTTGATTTCCAGAACAGGA 57 NA DesignNoJunction Rattus norvegicus 81 Ccdc65 ENSRNOG00000058916 ENSRNOT00000090760 3 1 1 80 7 140395147 140395168 AGAACTTAGTCAAACTCACCCT 59 140395208 140396435 GGATCTTCTCACCCTTCTCC 59 NA Rattus norvegicus 81 Mir2985 ENSRNOG00000047006 ENSRNOT00000074092 1 1 1 60 2 179591385 179591403 TCCTCATTAAGGTGGGTGG 59 179591343 179591367 GGTGGGATACTATAACAACATTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 3 1 2 139 1 84893944 84894776 CTGTGGTTCAGTGACATTTAGG 59 84891942 84893844 AACTTCCCACCACTGTGAC 60 NA Rattus norvegicus 81 Olr319 ENSRNOG00000021050 ENSRNOT00000028575 2 1 1 60 1 228318199 228318217 CCAGTTCCAGCTACTCTCC 59 228318238 228318259 GTGATGAAAGTGTAGACCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep120 ENSRNOG00000017035 ENSRNOT00000023236 1 1 1 80 18 48711673 48714465 CAAGAAACAAAGCAGGCAC 58 48711611 48711629 GCTTATCTGTACCTCGGAC 57 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445,ENSRNOT00000064637 3 2 2 80 20 12899306 12899324 GCAGCTGAAGAAGTATCCA 57 12898577 12899263 CTCTTGCTTCAACCTTTCCT 58 NA Rattus norvegicus 81 Medag ENSRNOG00000000906 ENSRNOT00000001205 2 1 1 80 12 6715926 6715944 AGATAGAGCAAGGGATGGA 57 6715692 6715885 CTACTTCCTGGAAATCAAACTG 57 NA Rattus norvegicus 81 Olr567 ENSRNOG00000060426 ENSRNOT00000083330 1 1 1 92 3 75576155 75576518 CGATATCGTAAATTGCTCCTCTC 59 75576085 75576103 AGGAACGTGGTAAAGAGGG 59 NA Rattus norvegicus 81 Tmem184c ENSRNOG00000012860 ENSRNOT00000017226 3 1 1 80 19 34049436 34049456 AGGGAAACTTCAGTTTCTCCA 59 34049498 34054093 GGCAGTACATGGCAAACAG 60 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 3 1 1 62 10 13000187 13001430 AAGCTGACTGAGCATTTGC 59 13001456 13001474 CCCAAGATTTGCAGACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom1r62 ENSRNOG00000032819 ENSRNOT00000044964 2 1 1 60 1 75326229 75326252 GATCTAATTACTGGATTCCTCCTC 58 75326271 75326289 GCAAGTTTCCCATGAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar4 ENSRNOG00000002428 ENSRNOT00000003286 1 1 1 113 X 78043133 78043152 TATGCTCTTCCAAAGTGCGA 60 78043228 78046299 ATTCCTCGAATGAGTGCCC 60 NA InUTR Rattus norvegicus 81 Lpar4 ENSRNOG00000002428 ENSRNOT00000003286 3 1 1 186 X 78043060 78043078 GCTGGACTAACCTTTCCCT 59 78043228 78046299 ATTCCTCGAATGAGTGCCC 60 NA InUTR Rattus norvegicus 81 LOC681325 ENSRNOG00000023005 ENSRNOT00000030692 3 1 1 96 X 80359619 80359639 GGACCAAATCCTTAGGTATCC 58 80360594 80360612 TAGGAAGGCTTCTCCAAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC688828 ENSRNOG00000037305 ENSRNOT00000056435 2 1 1 80 8 113688280 113689063 CATGGACTAGAGGTCTTGGG 59 113688219 113688237 CAGAAATGCAGGTAGGCCT 60 NA Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 1 2 2 80 3 82743621 82743639 TTTGAGTGCAAAGAACCCG 59 82743460 82743577 CATCCTTTGCATTCCCAGG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 3 1 5 178 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80530905 80531279 CCTCTATCTCCTCTACTGTGC 59 NA Rattus norvegicus 81 Thada ENSRNOG00000025899 ENSRNOT00000038246 1 1 1 80 6 7679857 7692255 TGCAGCAGGTTAAAGAAATAGG 59 7679798 7679816 AAGCCAGTTCAAATGCTCC 59 NA Rattus norvegicus 81 Thada ENSRNOG00000025899 ENSRNOT00000038246 3 1 1 80 6 7737603 7738381 ACTCTGTTAAACAGATTGTGCC 59 7737544 7737565 CCAAACAACGTTGAATAATGGG 59 NA Rattus norvegicus 81 LOC294154 ENSRNOG00000038883 ENSRNOT00000059426 3 1 1 80 20 7347022 7363748 ACTATGGAGATGTCATCTGGG 59 7346962 7346980 CAAAGGATGACAGCTGCTG 59 NA Rattus norvegicus 81 Lyn ENSRNOG00000008180 ENSRNOT00000011130 2 1 1 80 5 16638746 16640796 CTACCCAGGGAGAACTAACG 59 16640838 16640857 TCTGGACAGTTCTCCATTCG 60 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136,ENSRNOT00000073148,ENSRNOT00000071615 2 3 3 80 10 42647532 42647551 CAGAATCATGCAGCAATGGA 59 42647594 42650582 GCAGAAGTGTACTTTGGCC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574,ENSRNOT00000088654 1 2 2 227 13 99173786 99174500 AGAACTTTCGAGAGGTGGC 60 99174691 99174709 CATCCTCACGGACTCTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000088760 3 1 2 96 X 105577016 105579577 CCATGATTTCCAGAATGAACAC 58 105579634 105579652 TACCACACTAGGGCTTCTC 58 NA Rattus norvegicus 81 Hook1 ENSRNOG00000026226 ENSRNOT00000012396 3 1 1 80 5 114991275 114991295 GAACTACAGCAGCAAATTGAG 58 114991337 114992890 TTTGCTGGAACTTTCACCT 58 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000026088 3 1 2 65 1 80974455 80974473 CTCACATTTCCACACGCAC 60 81099312 81099333 CCGCACTCTTCACATTTATACG 60 NA DesignNoJunction Rattus norvegicus 81 Fgl2 ENSRNOG00000012881 ENSRNOT00000017232 2 1 1 80 4 10328686 10328705 TCTGTGGTCAACAGTTTGGA 60 10326676 10328646 TAGATGTTGAACTGGATTTGGC 59 NA Rattus norvegicus 81 Pcdh11x ENSRNOG00000030330 ENSRNOT00000045001 1 1 1 134 X 92596677 92655604 AACAGTAGTATATCGTGGGCTG 60 92655699 92655717 TAATTCTTCTCCTGGGCGC 60 NA InUTR Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108,ENSRNOT00000000640 1 2 2 80 20 8345478 8346878 ATGCTCAAGTGTAAGAGCGT 60 8346920 8346939 CTCATAGGGATTGGCTCTGG 60 NA Rattus norvegicus 81 Adcy5 ENSRNOG00000002229 ENSRNOT00000049180 2 1 1 80 11 68725219 68725237 GCAATGCCTACCTCAAGGA 60 68723031 68725175 TGGCCTTCTCTTCTTTCCG 60 NA Rattus norvegicus 81 LOC100909435 ENSRNOG00000047193 ENSRNOT00000072832 3 1 1 60 1 11758357 11758376 TCATCACTCTCACCTTGCTG 60 11758393 11758417 TTCTGGAGGAAGAAATACATAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306626 ENSRNOG00000008585 ENSRNOT00000011377 2 1 1 80 4 27617662 27617681 CAGCGAACTACATTCTCCTG 59 27615266 27615370 CTGCTTTGTAGAAGACGGAC 59 NA Rattus norvegicus 81 AABR07043702.1 ENSRNOG00000029323 ENSRNOT00000038605 3 1 1 80 19 36181031 36182072 CTTCTATAGCAACCTGCACAG 59 36182113 36182132 GTCTCCTGCTTAAAGGTGAC 58 NA Rattus norvegicus 81 Slc22a12 ENSRNOG00000021108 ENSRNOT00000028665 2 1 1 85 1 221915518 221915856 ATGCCTCAGATAGGTTTGGG 60 221915452 221915470 CATGAGGGCAGCTATTGTG 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 1 1 3 137 13 50559944 50559962 TGTTTCCAGTGCAATGTGC 60 50559173 50559843 TTGCAGTCAGAGCTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 3 1 1 60 2 191291778 191294223 AAGGCATTGAATGCAAGTG 57 191291736 191291755 CAAGGGTTATCTCCTTCTCC 57 NA DesignNoJunction Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000084451,ENSRNOT00000091794 1 2 3 60 14 60057921 60057939 AGTGCTTCCCTTAACTCCC 59 60057879 60057900 CACAAGGTACTTCTTAATGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 2 2 2 80 16 19767945 19768297 TGACTACGAGCTTAAGTACCC 59 19768338 19768357 TCGTACTGGTCCTGAAACAC 60 NA Rattus norvegicus 81 Magea11 ENSRNOG00000003532 ENSRNOT00000004684 3 1 1 86 X 141848916 141853996 GTGCTTGAAGACCACTCTC 58 141854046 141854064 CTTGATCATGCTTCTGCCT 58 NA InUTR Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 1 1 1 60 X 152196416 152196570 CATAAAGGTATATGACTTGGTGGAC 60 152196587 152196606 AGTGAATGCCTTCATTTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Npm3 ENSRNOG00000017622 ENSRNOT00000023963 1 1 1 80 1 265505634 265505937 TCTTCTTCGGTTGTGAGCT 59 265505572 265505592 GCACATGTTCTGTATCATCCT 58 NA Rattus norvegicus 81 Utp20 ENSRNOG00000005823 ENSRNOT00000008317 2 1 1 80 7 29332020 29334311 CAGGAATGCGAGATATTTCCC 59 29331960 29331978 GCAAAGACATTGGTCAGGA 58 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000010627 1 1 2 80 10 94179761 94179780 GACATGGAGACGACTTACAG 58 94179823 94181918 ATTTGTCAGATCAGGCTCC 57 NA Rattus norvegicus 81 AC130391.3 ENSRNOG00000053025 ENSRNOT00000085865 1 1 1 80 17 43680332 43680351 CGTTTGTCAGAGGATACAGC 59 43680394 43688850 CAAGTAATCGTGCCAGGAG 58 NA Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076,ENSRNOT00000004269 3 2 2 80 10 25833450 25833468 CCAAGTATGAAATGGCGTG 57 25832957 25833406 CAGGGCTGTCAGTAATAGG 57 NA Rattus norvegicus 81 Wfdc11 ENSRNOG00000033980 ENSRNOT00000067008 3 1 1 80 3 161130638 161131529 AAGAACAAGTATTCTCCGGG 57 161130577 161130595 ACACTTCTTGGTACAGTCG 57 NA Rattus norvegicus 81 Rpl13a ENSRNOG00000020618 ENSRNOT00000027976 3 1 1 80 1 101121020 101121267 ACCAGAAAGTTTGCTTACCTG 59 101120960 101120978 CTCCTCCAGAGTAGCTGTC 59 NA Rattus norvegicus 81 Sox13 ENSRNOG00000028353 ENSRNOT00000032244 1 1 1 80 13 50470757 50470858 TACAGGAAGTTGTTCCAGC 57 50470902 50470920 CTTCCACAGAGCTTCTTCC 58 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 2 2 4 80 14 22529844 22532484 AATGACCTCCTTGGTCATCC 60 22532523 22532545 ATGATAGATGGCCTCATAGACAC 60 NA Rattus norvegicus 81 Itgb1bp1 ENSRNOG00000059402 ENSRNOT00000092192 2 1 1 80 6 43356959 43356977 TTCGCAAAGGCAAGAAGAG 59 43354538 43356915 TGGAATCCACAGACTTGCT 59 NA Rattus norvegicus 81 Hspb3 ENSRNOG00000010992 ENSRNOT00000014627 2 1 1 60 2 45518002 45518020 TCACGGAGTTTCACCAGAC 60 45517960 45517981 CAGACAAATCTTTGGTTTCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r108 ENSRNOG00000048787 ENSRNOT00000068151 2 1 1 60 7 18121045 18121065 ACTATCAACCAGAGCAACTCC 60 18121084 18121105 CAATGTACTTGGTGGTTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmp2 ENSRNOG00000021276 ENSRNOT00000028904 3 1 1 97 3 126337628 126343856 TCACGAAGAAGCCATCGAG 60 126343914 126343935 TGAGAAACTCATCAGTAGGGAC 59 NA Rattus norvegicus 81 Entpd7 ENSRNOG00000045548 ENSRNOT00000023111 2 1 1 80 1 262994412 262994431 ACTGCACAGAGGATGTACTG 60 262994474 262997198 TGCCACAGTAATCCTGAGC 60 NA Rattus norvegicus 81 Rps19l1 ENSRNOG00000031474 ENSRNOT00000041802 2 1 1 62 7 111722928 111722946 ACGATGCCTGGAGTTACTG 60 111722780 111722798 TCTGATGAACTCCTGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Sez6 ENSRNOG00000009350 ENSRNOT00000048543 1 1 1 80 10 64868109 64868129 CATCCTTACTTGCCATGATCG 59 64867968 64868069 TTGAACTGTTCCAAGAGACAC 59 NA Rattus norvegicus 81 Orc6 ENSRNOG00000024043 ENSRNOT00000039467 2 1 1 80 19 27464504 27464523 TGGAGTCGGATCTTGTAAGG 59 27463628 27464462 GGTACTCCTCTGCTTTCCTC 60 NA Rattus norvegicus 81 Rn60_5_0814.26 ENSRNOG00000013609 ENSRNOT00000076568 3 1 1 90 5 77428432 77428454 GGAGCAATGTTCTATAGGAAAGG 59 77423848 77428382 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 2 1 1 64 6 107555753 107555773 TGGAGTACTTTGAAGAAGCTG 58 107555799 107556976 AATTCCTGGACCCTTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1470 ENSRNOG00000055982 ENSRNOT00000090151 1 1 1 60 10 60220356 60220374 GTGAGGACAGTGTGATCCC 60 60220398 60220416 CAAGCCACTTTCAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1313 ENSRNOG00000031942 ENSRNOT00000043988 2 1 1 60 8 43409102 43409122 CCTAACTTCCCTCACTTTCCA 60 43409141 43409162 GAAATAATAGCCCACTTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r97 ENSRNOG00000060112 ENSRNOT00000077949 3 1 1 60 4 121900065 121900087 CTACTCTAGGATGACATTCAAGG 58 121900104 121900125 GGACACAATAATTTGGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tubb4a ENSRNOG00000047505 ENSRNOT00000075767 1 1 1 80 9 9962296 9962314 CACTGGGACCTATCATGGG 59 9962358 9962504 TAATTTCCACCTGTGGCCT 59 NA Rattus norvegicus 81 Slc27a1 ENSRNOG00000018170 ENSRNOT00000024659 2 1 1 83 16 20014405 20014423 GCAGAAGGTTCTTGCATCC 59 20014470 20014980 TGGATCTTGAAGGTGCCTG 60 NA Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 2 2 2 80 2 188452439 188452459 CCTCAAGGAGATGATCAAAGC 59 188452499 188452660 GATTCTGCATGGTACTCATGG 59 NA Rattus norvegicus 81 Mir3551 ENSRNOG00000048590 ENSRNOT00000072847 2 1 1 61 X 151272885 151272903 TGGGCAGTACTGTCTTCAC 59 151272842 151272863 CACCATGGTGAATTTCATAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000080628 3 1 2 85 17 49990616 49990634 AACTAAGGTGCGCTACTCC 60 49957193 49990568 GAACCTCAGTGATCAACTGC 59 NA InUTR Rattus norvegicus 81 Tspy26 ENSRNOG00000026770 ENSRNOT00000036956 2 1 1 60 3 148706218 148706236 CCTATTTGGGAGCAACCCT 59 148706176 148706196 TCTGCACTCATACTCCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh10 ENSRNOG00000009771 ENSRNOT00000013152 1 1 1 80 2 69623960 69623978 CAACGCTCCACAATTTGCT 60 69624018 69629028 CTTATTGTCTGTATCAGCTGTCC 59 NA Rattus norvegicus 81 Foxa2 ENSRNOG00000013133 ENSRNOT00000017742 2 1 1 100 3 142383467 142384457 GCGAGTTAAAGTATGCTGGG 59 142385529 142385547 TTGCTCACGGAAGAGTAGC 60 NA InUTR Rattus norvegicus 81 Spatc1l ENSRNOG00000001262 ENSRNOT00000001704 3 1 1 82 20 13169954 13169974 ACCTAAGAAGGTGTGCTTCTC 60 13165686 13169915 TCTGGATCTCATTGAGGTAATAGG 59 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 3 2 2 80 10 82391005 82391024 AGCTGGTAGCGTTCTTATCC 60 82390753 82390965 TCTTGATGAACCTGGAATTGTC 59 NA Rattus norvegicus 81 Man2b1 ENSRNOG00000023910 ENSRNOT00000037699 3 1 1 80 19 26206595 26206615 CAGAACTTCTCATTCTGTCGG 59 26206655 26206914 AATAATTACCCGGAAGTGCTC 58 NA Rattus norvegicus 81 Pdlim2 ENSRNOG00000008543 ENSRNOT00000011663 3 1 1 98 15 51853824 51853842 CGTTGACTGTGAATGTGGT 58 51853054 51853762 TCTCTGTGACCTTCGTCAC 59 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130,ENSRNOT00000082239 3 2 2 80 5 101587969 101587988 ATTTCAAACCTGGAGACCTC 58 101584481 101587929 CATCAGGAACTTCATCTACTCG 59 NA Rattus norvegicus 81 Rn60_6_1033.1 ENSRNOG00000032924 ENSRNOT00000046038 1 1 1 60 6 93790414 93790432 GGATCGGTACTTCCGAGAG 59 93790456 93790474 TTCACGGTGTTTCTTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 2 2 2 82 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935392 166935413 GAAATGTCCTTATGTGCTTCCT 59 NA Rattus norvegicus 81 Olr1305 ENSRNOG00000039238 ENSRNOT00000060094 2 1 1 60 8 43249039 43249057 TTACACCATTGTTGTGCCC 59 43248997 43249016 GACATCCTTATTCCGCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909935 ENSRNOG00000032077 ENSRNOT00000044773 3 1 1 60 1 149914434 149914453 GATTCCACACTACAGACACC 58 149914393 149914412 AGATCTCCAGGAATGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd209e ENSRNOG00000028803 ENSRNOT00000031997 2 1 1 83 12 2386784 2386804 GAAGAAGTTCAGTGGGAACAG 59 2386309 2386742 GCAGAGGCTATCAATTTCAGAC 60 NA Rattus norvegicus 81 LOC100362978 ENSRNOG00000045804 ENSRNOT00000039860 1 1 1 144 11 67437907 67440351 TTGCTGACAAAGTCAGAGC 58 67436441 67436459 ATGTGGAGGAAACAACCAC 58 NA Rattus norvegicus 81 Colec10 ENSRNOG00000008591 ENSRNOT00000011379 2 1 1 80 7 93975539 93975557 GTCTGGATGTTGATGGTCG 58 93975598 94005582 CACCATTATCTCCTTTAGGTCC 58 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 3 1 1 94 X 93065315 93065459 AAACCTATGGCACTGTCAG 58 93065239 93065257 TTTGCAGAGTACTGAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07035107.1 ENSRNOG00000000891 ENSRNOT00000035992 1 1 1 80 12 4737874 4737893 TTGGATCCTTCCCAGAAAGG 59 4737931 4738276 CAAACTGTAACCTATAGCAGTGAG 59 NA Rattus norvegicus 81 Rpo1-3 ENSRNOG00000000954 ENSRNOT00000001261 3 1 1 91 12 9694509 9704216 ATGGGCTGGATGAAGTGTC 60 9694436 9694455 TCTTGCTCTTTATGGGAGGG 59 NA Rattus norvegicus 81 Cnih3 ENSRNOG00000022724 ENSRNOT00000036705 1 1 1 80 13 99663168 99663187 GCTTTCTGCTACATGCTGTC 60 99663228 99714685 CTCATCGAAGGCGATTATGTG 59 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000083580 2 1 2 81 14 84237521 84237539 CTTGTCACTGACTGCAGAG 58 84237583 84244980 CATCTCAGGAAACCACTTGG 59 NA InUTR Rattus norvegicus 81 Fbf1 ENSRNOG00000008577 ENSRNOT00000011560 3 1 1 80 10 104706138 104706156 ATTCCCACTAAGAAGCCAC 57 104705246 104706096 GTCCTCAAAGTCTTCAAAGGA 58 NA Rattus norvegicus 81 Hnrnpul2 ENSRNOG00000019507 ENSRNOT00000026416 1 1 1 80 1 225021062 225021080 TTCATCCATGCTGTACCTG 57 225021124 225021403 CAGAATCACCTCACACTCC 58 NA Rattus norvegicus 81 Hyi ENSRNOG00000037518 ENSRNOT00000056815 1 1 1 89 5 137191341 137191359 GTATTTCCTGGACACTCCC 57 137191493 137191607 CAGTGGAATATGTCCATTTGC 58 NA Rattus norvegicus 81 Olr1302 ENSRNOG00000039244 ENSRNOT00000060101 2 1 1 60 8 43192115 43192133 TTCATGTACCTTCAGCCCT 58 43192073 43192092 ACACAGAAGACACTTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp13 ENSRNOG00000030639 ENSRNOT00000048030 3 1 1 80 2 119197473 119224129 CTACGACTCTCCGAACTCTG 59 119224171 119224190 CTTTCAACGTGTTCCCTTCC 60 NA Rattus norvegicus 81 Supt16h ENSRNOG00000011953 ENSRNOT00000016288 2 1 1 80 15 28597870 28611844 TACAGTAACTGGCGGAAAGG 60 28597809 28597830 AATTTCTTCATCAACACCCACC 60 NA Rattus norvegicus 81 Gh1 ENSRNOG00000011207 ENSRNOT00000015818 3 1 1 85 10 94487147 94487776 TACAAAGAGTTCGAGCGTG 58 94487080 94487098 GTCTCTGAGAAGCAGAACG 58 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 3 2 2 80 12 11723024 11723122 TCAAGGAGATGTTCCCTGTC 59 11722963 11722981 GGACAGGTTTGCCTTTCTC 59 NA Rattus norvegicus 81 Lrrc36 ENSRNOG00000016854 ENSRNOT00000022622 1 1 1 80 19 37390035 37400878 TGGAAACAGACTCAAACAAAGG 59 37400918 37400937 TTGCACAAATGCTTGCTAGG 60 NA Rattus norvegicus 81 Lyzl1 ENSRNOG00000016295 ENSRNOT00000021901 3 1 1 81 17 56255943 56256657 GGATGAACTATTGGCAGGG 58 56255880 56255898 CAGGAAACATCGCATCCTC 59 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 1 2 2 82 20 12658145 12658930 GATTGCCTTCCAAGACTGC 59 12658974 12658994 CATAAGGTTTCAGCCTCAAGG 59 NA Rattus norvegicus 81 AC139642.1 ENSRNOG00000017710 ENSRNOT00000023814 3 1 1 64 4 118431803 118431821 ACAAGCAGAACACAGACAG 58 118431849 118431868 GACACAATGTGTCTGGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ica1l ENSRNOG00000017258 ENSRNOT00000041546 3 1 1 80 9 66808475 66808495 CTCAAATGATGTCCCAAATCC 57 66806717 66808435 TGTCTTGTAGTTGCTTGAGAG 58 NA Rattus norvegicus 81 Idi2 ENSRNOG00000046404 ENSRNOT00000045035 3 1 1 93 17 57702165 57702707 AGGACCAGATTTCCATAATGGA 59 57702093 57702112 TAGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Zfp618 ENSRNOG00000006719 ENSRNOT00000037313 2 1 1 80 5 78951905 78951923 AGGAGCTCACAGAATTCCA 58 78953405 78954321 ACACGTGTAAGGTTTCTGC 58 NA Rattus norvegicus 81 Rnf144a ENSRNOG00000007370 ENSRNOT00000009877 3 1 1 80 6 45537340 45537359 TGGAAACTGCAATTAGCTGC 60 45537115 45537303 CAACCATACACTCAATCTCATTCTC 60 NA Rattus norvegicus 81 Dnali1 ENSRNOG00000024957 ENSRNOT00000029388 3 1 1 81 5 143061549 143061567 TCAACTTCCTGTGTCCCAG 59 143060303 143061504 CTTCTACCCACTCCCTTGG 59 NA Rattus norvegicus 81 AC129162.1 ENSRNOG00000014180 ENSRNOT00000019177 3 1 1 80 9 15309189 15309207 TCCACCAGTCAACACAGAC 60 15309251 15310092 GACGTAGGAGCCTGAACAG 60 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 1 2 2 80 1 166623491 166623770 AGAAGATGGCTGAAGTGGG 59 166623813 166623832 CACAGGAGGTCATAAGGAGG 59 NA Rattus norvegicus 81 LOC100910378 ENSRNOG00000047334 ENSRNOT00000071256 3 1 1 60 2 46186160 46186181 AATATACAGAGACCCATTTCCC 58 46186200 46186220 ACCGTGATAACATAGATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnat3 ENSRNOG00000005268 ENSRNOT00000007032 1 1 1 80 4 13832002 13832023 AGATCTCTTCCAGGAGAAAGTG 59 13828428 13831964 TCTTCGAATGTATTTGGTCCAG 59 NA Rattus norvegicus 81 LOC691921 ENSRNOG00000026982 ENSRNOT00000031297 1 1 1 89 7 27221592 27224098 CCTGACCTGACAATACCTG 57 27224151 27224169 CTGAGATTCACGGTGTCTC 58 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 3 4 4 80 10 1435896 1437187 ACTTTGAGTTGGAAGTATCCC 58 1434336 1434357 GCTGATAACTATGTGTCTTTCC 57 NA Rattus norvegicus 81 Rn60_5_0814.22 ENSRNOG00000051041 ENSRNOT00000076455 3 1 1 60 5 77655879 77655898 AAGGTAGGCAATACCAGAGG 59 77655838 77655856 ACTGCATACTTATGGCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ramp1 ENSRNOG00000019926 ENSRNOT00000027012 1 1 1 93 9 98334299 98363637 GACCATAGGGAGCTATGGG 59 98363694 98363712 GAACTTGTCCACTTCCGGA 60 NA Rattus norvegicus 81 Rn60_2_1403.1 ENSRNOG00000051358 ENSRNOT00000076525 3 1 1 60 2 120637792 120637812 CTAAAGCATTGTACCGAAAGC 58 120637831 120637852 GCCAATGCTTGATCATATTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 3 1 1 79 20 6193187 6194112 TCACAGGATGATTCAAGAGCA 60 6193128 6193146 CTCTCATGAACATGAGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Stk32a ENSRNOG00000027066 ENSRNOT00000031370 3 1 1 80 18 37630559 37630580 AGGAATGTCTTCAAAGAACTCC 58 37630619 37652666 ATCTTGGAAGGAATACCACAG 58 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 3 2 2 81 9 49867752 49872079 GAGAAGTTTCAGGTAATGTACAGG 59 49867694 49867712 TTGCTTCCAGGAACTGGAG 60 NA Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 2 2 2 80 1 84367069 84369898 TCTCAGTGACTATGGCCAC 59 84369942 84369960 CATAATTGACGGCAGGTCC 59 NA Rattus norvegicus 81 Hdac4 ENSRNOG00000020372 ENSRNOT00000027622 1 1 1 80 9 99084048 99084830 AGTACACCCATGGGTTTCTG 60 99083987 99084007 CTTGCTCACATTCAACCTCTG 60 NA Rattus norvegicus 81 Olr227 ENSRNOG00000049285 ENSRNOT00000073451 3 1 1 60 1 148862504 148862525 AAACCAGACAAGAGTAACTGAG 58 148862543 148862564 TATTTCAGTAGGCAGGGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdia6 ENSRNOG00000050197 ENSRNOT00000074829 1 1 1 80 6 42580688 42581373 AGCCGGTATGGGATTAAAGG 60 42581416 42581434 CCGTCCACCATCATAGTCC 60 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761,ENSRNOT00000080533,ENSRNOT00000082876 3 4 4 80 3 112276677 112276895 GTCAATGATGCAGGCTTCC 59 112276937 112276957 GATGTTCATGTGTTTGTCTGC 59 NA Rattus norvegicus 81 Nfkb2 ENSRNOG00000019311 ENSRNOT00000026235 2 1 1 80 1 266058874 266058892 ATGGGTCTTCATGAGGGAG 59 266058935 266059033 GTCTTCTTTCACCTCTGTGC 59 NA Rattus norvegicus 81 Tas2r114 ENSRNOG00000005692 ENSRNOT00000007497 2 1 1 60 4 165831508 165831530 TGACTATTGCATTCCTCTATCCC 60 165831470 165831490 CGGCTGTATGCTAGAATTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clpp ENSRNOG00000047052 ENSRNOT00000072001 1 1 1 170 9 10051839 10053373 ATCAATAGCCCAGGTGGTG 60 10051687 10051705 GATTCTGGAATTGGGCAGC 59 NA Rattus norvegicus 81 Srp9 ENSRNOG00000003211 ENSRNOT00000004297 2 1 1 80 13 100555852 100555870 GTGGTTCTCAAGTACAGGC 58 100555912 100558431 TGTTCTGTACACCAAACAGAC 59 NA Rattus norvegicus 81 Ccdc124 ENSRNOG00000018932 ENSRNOT00000025626 3 1 1 81 16 20321181 20321199 GAAGGAGCTGGAAGATGCT 60 20321243 20322137 CTTCTCCTTCTCCTCCTTGC 60 NA Rattus norvegicus 81 Olr29 ENSRNOG00000049938 ENSRNOT00000049595 3 1 1 60 1 150261645 150261664 AGGATTTCTTGCTCTGACAC 58 150261604 150261624 GACAGACACCAATTCCAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcap29 ENSRNOG00000007884 ENSRNOT00000010631 2 1 1 80 6 50923450 50923469 TTGCCAGCTTTCTTTATGCC 60 50920039 50923407 TCTTGTGCCATCTCTGAGG 59 NA Rattus norvegicus 81 Imp4 ENSRNOG00000013285 ENSRNOT00000066913 2 1 1 80 9 37771497 37772052 GTGGTGAAGGTGTAACCAG 58 37771435 37771456 AGGTAGTGATCATGACCTTAGG 59 NA Rattus norvegicus 81 Phb ENSRNOG00000046799 ENSRNOT00000075733 3 1 1 80 10 83480065 83480085 CAGAAGCCAATCATCTTTGAC 58 83480126 83483453 GACATTCTGCAAGTCTTTGC 58 NA Rattus norvegicus 81 E2f2 ENSRNOG00000047741 ENSRNOT00000072618 2 1 1 85 5 154526042 154527920 ATGCCAACAAGAAACTGGC 59 154527969 154527987 CTTGACCGCAATCACTGTC 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867,ENSRNOT00000091150 3 2 2 80 1 214194945 214194966 GCTCCTATAGAACAGGAAGACC 60 214195006 214196546 TGTCCTGGAAAGTTCTGAGG 59 NA Rattus norvegicus 81 Sdhc ENSRNOG00000003163 ENSRNOT00000004228 1 1 1 80 13 89513058 89514452 CTCTGTATCAGAAATGCTGCTC 59 89512999 89513020 GGAACTCGTGTTCTTATTCCAG 59 NA Rattus norvegicus 81 Apaf1 ENSRNOG00000008022 ENSRNOT00000010869 3 1 1 80 7 31710796 31717452 TGATTCAGGTGTGGAATTGG 58 31710735 31710755 GGAGTCTGAAGTCCTTTACTG 58 NA Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 1 1 1 86 9 12406836 12409468 GGACCTGACAGCTACTCAG 59 12409515 12409536 GTTTCCAGAACTACAATCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 3 1 1 88 9 12406836 12409468 GGACCTGACAGCTACTCAG 59 12409516 12409538 GTGTTTCCAGAACTACAATCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076030 2 1 4 80 15 36905069 36910632 CCTCATTTCTAGGAATATTCCATGG 59 36910667 36910688 TACTGTCCTTCTGTTCTTCTGG 60 NA Rattus norvegicus 81 Crym ENSRNOG00000061215 ENSRNOT00000088482 3 1 1 81 1 189954256 189955780 TTCTCCTTCAAGGAGGTGAG 59 189954194 189954213 GAACATCTCCTTGCACTGAG 59 NA Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000086431 1 1 2 80 18 44716373 44716394 GACTCTATCCAGACACATTGAC 58 44716434 44778260 AAAGACATCTGTAGCCACCA 59 NA InUTR Rattus norvegicus 81 Ell ENSRNOG00000019824 ENSRNOT00000026846 2 1 1 80 16 20606887 20613368 AAGCCAAGGACACATCTCC 60 20606825 20606847 CCAATATTGGAGAGGTAGAAGGA 59 NA Rattus norvegicus 81 Bbs5 ENSRNOG00000007127 ENSRNOT00000009396 1 1 1 80 3 55904687 55906373 AAATGGAAGAGAAGCCACAG 58 55906413 55906434 GGTCATCAGAGTCTATTTCCAC 58 NA Rattus norvegicus 81 Prss55 ENSRNOG00000047258 ENSRNOT00000072994 3 1 1 96 15 47439007 47442521 GCAAATGTTGAATGCGGTG 59 47438929 47438947 ATGGGAATTCACCCACCTC 59 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000055523 ENSRNOT00000052183 2 1 1 80 10 60812142 60812162 GGGCTTGTTGTTATACTTCCA 58 60812202 60812355 TGAAGGAACCTTAAGGATGGA 59 NA Rattus norvegicus 81 Disp1 ENSRNOG00000003635 ENSRNOT00000004834 1 1 1 86 13 101461317 101461335 GTGTTTGCTTCAGCAGGAG 60 101455531 101461270 GGATCTGATCCTGGAGTTATCC 60 NA Rattus norvegicus 81 Zfp174 ENSRNOG00000007655 ENSRNOT00000010059 2 1 1 87 10 11933234 11933252 GATCTCATGAGCAGCTGAG 58 11929891 11933183 CTGGAGGACTCTGTCTCAG 59 NA Rattus norvegicus 81 Rpl4 ENSRNOG00000009378 ENSRNOT00000013461 2 1 1 80 8 69126230 69126248 CATGTTGAAGCTGAACCCT 58 69126291 69126521 ACTCGAAGTTTGTGATTCCT 57 NA Rattus norvegicus 81 Pik3cg ENSRNOG00000009385 ENSRNOT00000012487 1 1 1 80 6 51492738 51492759 GAGATGTTACAGAAAGTCACCA 58 51491303 51492700 CTGTGAAATAACTTGGGAACTG 58 NA Rattus norvegicus 81 AABR07009224.1 ENSRNOG00000042602 ENSRNOT00000068507 1 1 1 65 2 89498258 89498277 AGAAAGTCGACATTGAAGCT 58 89498212 89498230 CTTTGTGAACAGAGCAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntln ENSRNOG00000043151 ENSRNOT00000008757 3 1 1 80 5 103261094 103261114 GTCAAGGTTATGAGCCATGTG 59 103261155 103292477 TGTTTCAGAATCACTGCTGC 59 NA Rattus norvegicus 81 AABR07066754.1 ENSRNOG00000042468 ENSRNOT00000066779 2 1 1 80 9 14864588 14864608 GCACTTCTCATCAAGAATGTG 58 14864648 14864671 GTGTAGCTTCAAGATCTGTCC 59 NA Rattus norvegicus 81 Rn60_19_0706.2 ENSRNOG00000051278 ENSRNOT00000073582 3 1 1 60 19 59913860 59913878 ACTTGACATAGTGCCTCCT 58 59913902 59913920 GGCATCAGAGGTCTCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 2 2 2 80 10 43873942 43873966 CTAGATCTTGTGAATTCTCCAAAGG 60 43873998 43874473 CTCTTCGGTTTAATAGAAGTAGTGG 59 NA Rattus norvegicus 81 LOC102555578 ENSRNOG00000050230 ENSRNOT00000042110 1 1 1 80 3 145882878 145882899 GGATCCTTCTCAGAAGAGTCTC 60 145882939 145883158 TCCCAAACGTAGCCTATAGC 59 NA Rattus norvegicus 81 LOC102555578 ENSRNOG00000050230 ENSRNOT00000042110 3 1 1 80 3 145882877 145882897 TGGATCCTTCTCAGAAGAGTC 59 145882938 145883157 CCCAAACGTAGCCTATAGCA 60 NA Rattus norvegicus 81 Fbxo10 ENSRNOG00000012634 ENSRNOT00000016875 3 1 1 81 5 60602124 60606395 CCACTCATCCTGTGTAACCA 60 60602062 60602080 TCCTGATGACACCTTTCCC 59 NA Rattus norvegicus 81 Hcls1 ENSRNOG00000038881 ENSRNOT00000003326 2 1 1 80 11 66737583 66737787 ATGATTACCAAGGAGAGGGA 58 66737522 66737543 CTTCATCAACCATCTCAATGTC 58 NA Rattus norvegicus 81 Rn60_5_1085.1 ENSRNOG00000056687 ENSRNOT00000088842 1 1 1 60 5 104450523 104450544 CAGGTAGCTTGTTGATAGTTGG 59 104450565 104450583 GAGAAGACTCTTGCCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 1 2 3 80 3 150050950 150058118 CAAAGCTGGAGTATGAACAGG 59 150050890 150050908 GTAGCTGATTCGCAGTCTC 58 NA Rattus norvegicus 81 Mfsd6l ENSRNOG00000037712 ENSRNOT00000057223 2 1 1 60 10 55139415 55139434 GCTAACCTGAGTCTACTTCC 57 55139455 55139475 TCTTTGACACATTGACTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amer1 ENSRNOG00000007984 ENSRNOT00000051132 2 1 1 180 X 64702320 64702338 GAGGTTCCAGCTCAGATCC 60 64689936 64689957 TGTTTCATCCTGTTGAATCTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Twist1 ENSRNOG00000011101 ENSRNOT00000014763 2 1 1 164 6 53401920 53401938 GAGCTGGACTCCAAGATGG 60 53402062 53402581 GAAACAATGACATCTAGGTCTCC 59 NA InUTR Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 1 2 2 80 9 14499402 14500084 GTACATCTCCGAGGGTTGG 60 14499340 14499359 CACTTTCCATGCCAGATGTG 60 NA Rattus norvegicus 81 Ngfrap1 ENSRNOG00000028822 ENSRNOT00000045997 3 1 1 79 X 106823952 106823971 GATTGAGAGGAGGACTACGC 60 106824416 106824434 TTCCTGTCCATTCTGCAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1562431 ENSRNOG00000032306 ENSRNOT00000049479 2 1 1 90 9 76441029 76441047 GATGTCCCTGCAGAAAGAC 58 76441124 76441142 GTACCTGGAAGAGGGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000001667,ENSRNOT00000051565 2 2 2 80 12 16044797 16046369 ACTATCAACAAACTGCAGACG 59 16046406 16046429 CTCTTCATAGTATGTTTCCATGGC 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 3 2 4 80 5 104739502 104740930 TTTGGTGATCCAAGATTACTGG 59 104740969 104740989 TGATGAACACCTCTGTTACCA 59 NA Rattus norvegicus 81 Mtrf1 ENSRNOG00000047106 ENSRNOT00000072969 3 1 1 80 15 61668953 61668971 GTGCCTAAGGAGAAGTGTG 58 61669015 61669207 TTGGCAGATATCACCTCCA 58 NA Rattus norvegicus 81 Psme4 ENSRNOG00000060340 ENSRNOT00000078329 1 1 1 80 14 115235930 115235949 CATGGTTGTTTATGCTGGTG 58 115235990 115237425 ATAATCTGTTCTGCCTCTGTC 58 NA Rattus norvegicus 81 Aimp1 ENSRNOG00000011384 ENSRNOT00000015213 3 1 1 80 2 237740502 237742407 TCATAATGGAGTGAAGCAGGT 59 237740442 237740462 CGAGTCACACTTTCAGAAACG 60 NA Rattus norvegicus 81 Wdtc1 ENSRNOG00000008377 ENSRNOT00000011311 3 1 1 84 5 151491612 151491630 TACCAGTTCCGCTACTGTG 59 151490593 151491565 CGATGTACTGAGCATTGCTG 60 NA Rattus norvegicus 81 Fgfbp1 ENSRNOG00000003095 ENSRNOT00000004128 2 1 1 60 14 71649658 71649681 CAGAAGAATATCTGTGAGAACTCC 59 71649698 71649718 ATTTCTTTCTGCACACTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000009979 3 1 2 80 7 142875913 142875931 ACTGGAAACCCTGTATGGG 59 142875972 142876187 TCATACAGGGTTTGCTTAAGGT 60 NA Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000080706 1 1 2 82 16 19996453 19996471 TACAGAGGAGCAACAGGAC 59 19995041 19996408 TACTCCTCAGGTCATCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc117 ENSRNOG00000010706 ENSRNOT00000015627 1 1 1 80 14 85768079 85768100 AGAAATGGATCAGACAACTGGA 60 85767545 85768042 TCAATTATCCTGTCCTCGATCTC 60 NA Rattus norvegicus 81 Tas2r125 ENSRNOG00000021397 ENSRNOT00000029713 2 1 1 60 4 167068448 167068467 GTGGAGACTTAGCAAAGTGG 59 167068407 167068426 CATAAGCAAGAGGACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 1 2 2 80 19 44143513 44143532 CATGTGAATGGTGACCTGAG 59 44141135 44143472 CACCGATACGTTGTATCTGAC 59 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466,ENSRNOT00000011732 2 2 2 80 7 143183430 143183448 GTCAAGGCACAGTATGAGG 58 143183259 143183388 CATCTCCTCATACTTGGTCTG 58 NA Rattus norvegicus 81 Tm7sf3 ENSRNOG00000001817 ENSRNOT00000002486 3 1 1 80 4 180931802 180933318 CCTACTCAGAAAGAGATCCCA 58 180931742 180931761 AGTCCAAGTAGATGTTGGGA 58 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000055872 2 1 2 86 10 34284414 34284433 TCAGTGTCAATGATGCTCTC 58 34284480 34284505 ATATAAGTCCCACTTTGGTCC 57 NA InUTR Rattus norvegicus 81 Smarcd3 ENSRNOG00000010077 ENSRNOT00000066598 2 1 1 80 4 7103978 7104724 TCCTCCCTCAAAGGATTCG 59 7104765 7104786 GATCCAGTTTCCTCTCAAATGC 60 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 3 2 2 80 X 82946082 82955316 TTCAGTGTAGTCAGGACGTG 60 82946021 82946039 AGTTCCTGCTGTTCCTGAC 60 NA Rattus norvegicus 81 Gpr85 ENSRNOG00000024636 ENSRNOT00000039005 3 1 1 186 4 40384294 40385268 GCATATTCCAGATATTCTGATGGC 60 40384131 40384149 CGCCATAGATGGATGGAGG 60 NA InUTR Rattus norvegicus 81 Olr757 ENSRNOG00000032386 ENSRNOT00000041799 1 1 1 60 3 102630331 102630349 CACATCATGGGAGGAGTGG 60 102630372 102630391 CTATGTACCTGTCAAACGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fut1 ENSRNOG00000020995 ENSRNOT00000028494 1 1 1 105 1 101599488 101600206 GAAGCTCAGCTATGTGGAC 58 101600275 101600293 TTTCCTCCATTCAGGTGGA 58 NA InUTR Rattus norvegicus 81 Ehbp1 ENSRNOG00000008917 ENSRNOT00000012131 3 1 1 80 14 106962980 106962999 AACTTTACCACATCGTGGAG 58 106962339 106962941 CTTGTAGTCGATTAAGTCTGGTC 59 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083971,ENSRNOT00000083568 2 2 2 80 10 36285556 36285575 CAGGAATGAGGATGAGAGGG 59 36285618 36287050 CCTTCGGGAATAACCAGCA 60 NA Rattus norvegicus 81 Ar ENSRNOG00000005639 ENSRNOT00000009129 3 1 1 80 X 67826624 67826642 AAGAGTTTGGATGGCTCCA 59 67826683 67827534 CCACTGGAATAATGCTGAAGAG 59 NA Rattus norvegicus 81 Ndufb6 ENSRNOG00000024539 ENSRNOT00000029712 1 1 1 80 5 56575207 56575226 ACGTCAAATATCATGTGGCT 58 56567307 56569036 CCAGAATTGTATCACCTGGA 57 NA Rattus norvegicus 81 Arid4b ENSRNOG00000049751 ENSRNOT00000010836 1 1 1 80 17 53899570 53899590 TGGAGATGAGAAGACACTGAG 59 53895939 53899531 TGGTCTAGTGTTTCACTTTCAG 58 NA Rattus norvegicus 81 Ehf ENSRNOG00000007484 ENSRNOT00000010580 3 1 1 80 3 93186717 93186840 GTAGCACAGTAGATCTGTTGGA 60 93186658 93186676 CAACTGGAAGGTGACTGGA 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 2 2 2 80 1 89468689 89468707 CAAAGGTTACATGCCTCCA 58 89467512 89467649 GTGGTATTGTCGTAGTAGAAGG 58 NA Rattus norvegicus 81 Olr337 ENSRNOG00000021074 ENSRNOT00000028608 2 1 1 60 1 228684960 228684978 CTGATGTCCTTGTCTTGCT 58 228685002 228685020 ACACAACCAGGAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 2 1 1 175 12 18520757 18521016 GATGGCTGCTGTTCAAGAC 59 18521155 18521173 TCTACAAGACTCTGCCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Dpep2 ENSRNOG00000023303 ENSRNOT00000034722 1 1 1 80 19 37967154 37967172 GTGATGGTGACCTTTGCTG 59 37965424 37967112 GTGATCAAAGTGATCTGCCAC 60 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232,ENSRNOT00000051009 2 2 2 80 2 233617250 233617268 TACCCAGACATGTCCACTC 58 233617312 233619810 ATTCTTGAACCAAACCCGG 58 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 2 2 2 80 18 58338772 58338795 TCAGGTCTTAGTTCATCTACACAG 60 58338834 58339465 AACCCTGGTATGCTGTAGC 60 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 3 2 2 80 18 58333471 58333489 AAAGCCAGCATGATGTACC 58 58333532 58333674 TTCTATGAGCTTTCCTGCTC 57 NA Rattus norvegicus 81 Trim9 ENSRNOG00000007031 ENSRNOT00000009560 3 1 1 82 6 92666483 92666501 GGCTTGGGCAATGTATGTG 60 92663922 92666438 TGATCCCTCCTTCAGTTCTG 59 NA Rattus norvegicus 81 LOC102549803 ENSRNOG00000045933 ENSRNOT00000075813 3 1 1 60 4 117574975 117574993 CCTAGTGTCTGGCTCTTGG 60 117574933 117574952 CAGGCAAAGGAGAAAGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384,ENSRNOT00000072624 2 2 2 80 4 126639697 126639715 TCAGCAACAACTCCATCTC 58 126637752 126639654 TGAAGGACAGAATCAACTCG 58 NA Rattus norvegicus 81 Klhl4 ENSRNOG00000005215 ENSRNOT00000006992 1 1 1 80 X 86193351 86194312 CAGCTCACAGATTGGTTCTC 59 86194355 86194373 CTTGTCTGGCTTCTAGCAC 58 NA Rattus norvegicus 81 Rps15al1 ENSRNOG00000032866 ENSRNOT00000051114 3 1 1 60 12 11302450 11302469 AGTGTGGAGTTATAAGCCCT 58 11302409 11302427 TTCTGCCATTCCTCTAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn6 ENSRNOG00000028095 ENSRNOT00000029655 3 1 1 80 3 2892837 2892856 GAAGCTGTTCACCAAATGGA 59 2892898 2893152 GCACAAGTGAAGTCCTTCTG 59 NA Rattus norvegicus 81 Ube2e2 ENSRNOG00000032690 ENSRNOT00000046879 3 1 1 89 15 7871555 7871576 CAGGATCTGTCTATGAAGGAGG 60 7871626 7905720 TTCGGAAGGTGACCTTAGG 59 NA Rattus norvegicus 81 Slc16a12 ENSRNOG00000021916 ENSRNOT00000030024 2 1 1 80 1 252984807 252984825 CTACTGGTCTCATCCTGGG 59 252983115 252984765 ATCCAAGACCTGTGAGAACTC 60 NA Rattus norvegicus 81 Pcyox1 ENSRNOG00000016704 ENSRNOT00000022532 1 1 1 80 4 118195381 118195401 CTATGGATTTCAGTCCCTGAG 58 118191749 118195341 GACTGGTAACGATAGATCCTC 57 NA Rattus norvegicus 81 Vom1r77 ENSRNOG00000032672 ENSRNOT00000044351 2 1 1 60 4 87872958 87872980 TCTATCTGTACTATCTGCCTCCT 60 87872920 87872939 ACGTACTGGGACTGATAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp19 ENSRNOG00000006778 ENSRNOT00000008909 3 1 1 80 7 3216608 3216627 TGGCCTTCTTACTTCCTGTG 60 3216670 3217118 GCAACAGGTAATCCACCAC 59 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528,ENSRNOT00000077797 1 2 3 80 3 8655622 8655798 TCATTCAGAAGCTCCTCCA 58 8655842 8655860 GCTGAACCTTGATCTCCTC 58 NA Rattus norvegicus 81 Mri1 ENSRNOG00000026211 ENSRNOT00000003762 2 1 1 109 19 25365119 25365137 CATCTCCTAGAGCAGACCA 58 25363034 25365046 CGGATCACACCTAATGCTG 58 NA Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 2 2 2 99 10 62025356 62025374 ACATCAGTGTCCCACAGTG 60 62023380 62025295 CCAAGATACACAACAGCTTCC 59 NA Rattus norvegicus 81 Pramef12 ENSRNOG00000037035 ENSRNOT00000048232 1 1 1 80 5 162385401 162385424 CTGGATGTCTTACAAACCATACTG 60 162385461 162385967 TCGAAGTCGGTAATTACTGGG 60 NA Rattus norvegicus 81 RGD1306441 ENSRNOG00000031449 ENSRNOT00000043065 1 1 1 112 15 80040891 80041271 TAAGTAAATGCTCGGGCCT 59 80041342 80041365 GTGCACTACTGATAATCTCAACAG 60 NA InUTR Rattus norvegicus 81 Isy1 ENSRNOG00000010021 ENSRNOT00000013571 1 1 1 80 4 119729759 119736772 TTCAGAATGCTGGTTTAGGG 58 119729698 119729716 AGTGTCCTTTCTCCCTCAG 58 NA Rattus norvegicus 81 Trim58 ENSRNOG00000026430 ENSRNOT00000047700 2 1 1 80 10 44274010 44274030 TGAAGAAGGAAATGGAGGAGG 60 44274071 44277224 TCTCCACTTTCTCCTTCCAG 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 3 2 2 80 1 48724172 48724190 CCCATGGAAGACATCCCTG 60 48722739 48724129 CTGAAAGGCATCCTTCTCCT 60 NA Rattus norvegicus 81 Wdr83 ENSRNOG00000004287 ENSRNOT00000005917 2 1 1 82 19 26189788 26189806 CTCTGATATCCAGCCTGGA 58 26189640 26189742 TTTATGGCCCACATACTCG 57 NA Rattus norvegicus 81 Wdr83 ENSRNOG00000004287 ENSRNOT00000005917 3 1 1 83 19 26189789 26189807 ACTCTGATATCCAGCCTGG 58 26189640 26189742 TTTATGGCCCACATACTCG 57 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 1 4 4 80 3 3178963 3178984 AAGGGTCATTGTCATTTGAGAC 59 3179022 3179644 CTTCTTGCCTTTGAAGGTAGTG 60 NA Rattus norvegicus 81 Ube2z ENSRNOG00000006868 ENSRNOT00000055500 2 1 1 80 10 83881373 83884049 ATTCTAGGTACGTGGACTGG 59 83881312 83881330 CATCAGGGACTGGATGGAG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880,ENSRNOT00000025680 1 2 2 80 1 212714229 212714778 TACTCTCCTTCCTGATATGGC 59 212714820 212714838 AAGTGTACTTGGCCTTCAC 58 NA Rattus norvegicus 81 Rn60_14_0866.4 ENSRNOG00000030988 ENSRNOT00000050532 2 1 1 60 14 85902501 85902519 TCTTCCGATGACCAGACAC 59 85902459 85902482 GAAGAGAACCTGATTTGTATCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fzd6 ENSRNOG00000004660 ENSRNOT00000006195 1 1 1 83 7 77900445 77900463 ATGGCCTACAACATGACGT 59 77900509 77918550 CAGAAAGTGCTCCATTTCCA 59 NA Rattus norvegicus 81 Nkpd1 ENSRNOG00000043378 ENSRNOT00000067272 3 1 1 125 1 80430047 80431081 AAATCATGACGCTGATGCAG 59 80431169 80431187 GAAACACCAGGAACCACAG 59 NA Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000090637,ENSRNOT00000057843 3 2 2 71 15 83711211 83712317 TCTGTGATTATGATGGTTGCAC 59 83712349 83712367 TATGAGTCCTCAGGTGAGC 58 NA DesignRelaxed Rattus norvegicus 81 Elovl6 ENSRNOG00000048949 ENSRNOT00000071270 1 1 1 80 2 234476386 234481118 ACCCGAACTAGGTGATACG 59 234481162 234481180 ACAGTGATGTGGTGGTACC 59 NA Rattus norvegicus 81 Stradb ENSRNOG00000010728 ENSRNOT00000043558 1 1 1 80 9 65773208 65773228 TGTGCTACAACCAATGAAGTG 59 65773268 65776201 GTCGAACCCTCTTCCTATCTC 60 NA Rattus norvegicus 81 Exd1 ENSRNOG00000025360 ENSRNOT00000038365 2 1 1 80 3 111336476 111338024 TCTGTTGGCTTCAGGTAGC 60 111336414 111336432 CATTGTTGAAAGCACGGCT 60 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 2 2 2 80 13 105045621 105047220 CTATTGCTTTAGGAATGTGCAG 58 105045562 105045582 CATTTCCATCCAAGATCCCTC 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771,ENSRNOT00000048404 1 3 3 80 1 150503261 150503660 GAACTCCAGAGCTTTACTGTG 59 150503702 150503720 TGGGTGACATCTGGTAGAG 58 NA Rattus norvegicus 81 Reg3a ENSRNOG00000006360 ENSRNOT00000008468 1 1 1 80 4 109478260 109478280 CGTCTGTCCTTCAACAATGTG 60 109478321 109479069 CTTCTGGGAGTCTTCACCTC 60 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 3 2 2 89 10 104455970 104455990 GCTGAAACTGAAAGAACTCCC 60 104456041 104456441 AGCATCAGGACAGTAGCTG 59 NA Rattus norvegicus 81 Rbl1 ENSRNOG00000006921 ENSRNOT00000064824 1 1 1 80 3 153278878 153280735 CACAAGCTAATAGTCACGTATACAG 60 153278822 153278843 CATAGTCACCATTGTATGCCAC 60 NA Rattus norvegicus 81 Rn60_7_1412.3 ENSRNOG00000059206 ENSRNOT00000090076 1 1 1 114 7 143369844 143370410 TTCATCAACAAGGTTGCGC 60 143369748 143369766 ATAAACAGGCTCCAGGCTC 60 NA Rattus norvegicus 81 Cdh23 ENSRNOG00000033087 ENSRNOT00000048029 2 1 1 80 20 29979524 29984845 ACCATTGAGGTGTTTGATGAG 59 29979464 29979482 GATGTTCTCCACCACAGAC 58 NA Rattus norvegicus 81 Wdr92 ENSRNOG00000022857 ENSRNOT00000029980 1 1 1 80 14 100381557 100381577 AGATGGTATAGGTGGACTTGG 59 100381616 100383716 CACACCTTTACAGTTCCATCTC 59 NA Rattus norvegicus 81 Zdhhc16 ENSRNOG00000046530 ENSRNOT00000072181 2 1 1 80 1 261186996 261187918 CCATCGAGACATACCACCA 59 261187959 261187980 AGAGGTAGACAAGACTCTTGTG 59 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000035637,ENSRNOT00000079779 1 2 2 60 5 144107996 144108015 AACCATCTCTGAGAACAGCC 60 144108036 144108056 AGTGGTTATTTGTCCCTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa6 ENSRNOG00000018288 ENSRNOT00000024714 2 1 1 80 3 150930381 150930400 CCCTTCACAGACTTTAGTCC 58 150927290 150930338 TTTGCCTCAAGTTCTGGTC 58 NA Rattus norvegicus 81 Olr402 ENSRNOG00000046228 ENSRNOT00000041987 1 1 1 60 3 16001812 16001832 AGGTACTATGGTCACTATCCC 58 16001854 16001872 GCCTATGCGGACATAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396,ENSRNOT00000091263 1 2 2 82 6 58469685 58469706 GAGAAACCAACAAATGTCAGGA 59 58469743 58471103 CTCAGATCTTGAAAGAGTTCTTCTG 60 NA Rattus norvegicus 81 AABR07000663.1 ENSRNOG00000056705 ENSRNOT00000091252 1 1 1 80 1 22332851 22332871 GGAAGGCTGCAAAGAACTG 60 22350133 22350154 TCAAGGTGTCAATTGTGTATGG 59 NA Rattus norvegicus 81 Rn60_X_0659.1 ENSRNOG00000051219 ENSRNOT00000076711 2 1 1 60 X 65014965 65014984 CTTCAGGCAGAAATGGAGAG 58 65014924 65014942 CTTTGGTCTCCTTGTCCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388,ENSRNOT00000090799 2 2 6 96 5 48007754 48007772 AAAGTCCTCAGGAGTTGCT 59 48007832 48008872 GTGAGGAGCCTAGAATCGG 59 NA Rattus norvegicus 81 Phospho1 ENSRNOG00000005569 ENSRNOT00000007352 2 1 1 182 10 83640473 83642199 TGTCTAGGGTCTTGGATGTG 59 83642344 83642362 ATCGAAGTCGAAGGTCAGG 59 NA InUTR Rattus norvegicus 81 Vat1l ENSRNOG00000011989 ENSRNOT00000075628 1 1 1 81 19 46615178 46615198 GCTCATAGGACTGTACAACCA 60 46615241 46689605 CATGGCCTCCTTTACCTCC 60 NA Rattus norvegicus 81 Vat1l ENSRNOG00000011989 ENSRNOT00000075628 3 1 1 82 19 46596212 46596231 AGGCCATCAAAGATTCTGTG 58 46596276 46608327 ACCTTCAGCTGAGATCCTC 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 2 2 2 98 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879513 142879532 TCATCCACGCCACTAATCTC 60 NA Rattus norvegicus 81 Carhsp1 ENSRNOG00000002610 ENSRNOT00000003514 1 1 1 82 10 7050012 7052410 ACATCTCTGATGTGGAAGGG 59 7052455 7052473 ATTCTTGGGCGGGATAGAG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 3 2 2 81 9 10742950 10742968 GATGACACTGAACCTGAGC 58 10741399 10742908 CTTCAGGATACTGCATAGTGAG 58 NA Rattus norvegicus 81 Lhfpl1 ENSRNOG00000027601 ENSRNOT00000030400 2 1 1 82 X 116616743 116629292 ACAGTTTGTAGGAGGGCTG 59 116616679 116616697 ACGTCTGCATTACCTCTGG 60 NA Rattus norvegicus 81 Lhfpl1 ENSRNOG00000027601 ENSRNOT00000030400 3 1 1 83 X 116616744 116629293 CACAGTTTGTAGGAGGGCT 59 116616679 116616697 ACGTCTGCATTACCTCTGG 60 NA Rattus norvegicus 81 Krt71 ENSRNOG00000049495 ENSRNOT00000068533 2 1 1 82 7 143349771 143350180 TGAAGAAGGATGTGGATGC 58 143349707 143349726 GAATTTGATGTCCTGGTCCA 58 NA Rattus norvegicus 81 Abca2 ENSRNOG00000014268 ENSRNOT00000020339 1 1 1 80 3 2666639 2666754 CTTCATCTTTCTAGACGAGCC 58 2666796 2666814 ATGAGGTCCAGAATGAGGT 58 NA Rattus norvegicus 81 Ticam2 ENSRNOG00000042070 ENSRNOT00000059466 1 1 1 109 18 40572004 40572022 TCAAAGTTCTGTGGCAAGC 59 40569627 40571931 AGGAGAAAGCAGTCAGCTG 60 NA InUTR Rattus norvegicus 81 Erich5 ENSRNOG00000005956 ENSRNOT00000007816 2 1 1 104 7 73241409 73241427 AAACAGGGTACATCCGGTC 59 73241494 73242781 CCGGTTTCTCCTTCAATGTG 59 NA Rattus norvegicus 81 Erich5 ENSRNOG00000005956 ENSRNOT00000007816 3 1 1 140 7 73241373 73241395 CGATGGTGTCAGAAATGAATCTC 60 73241494 73242781 CCGGTTTCTCCTTCAATGTG 59 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041,ENSRNOT00000036156 1 2 2 80 1 266019162 266019439 GTAGTGAGTCTATTGAGAACCTG 58 266019477 266019497 AATGGAATACTGTCTTGGCTG 58 NA Rattus norvegicus 81 Efemp1 ENSRNOG00000003553 ENSRNOT00000004764 3 1 1 80 14 113276301 113276320 TCTTGGCTCATTCATCTGTC 58 113276361 113277472 CATTCATCGATGTCTTCACAG 57 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 1 2 2 80 6 107642172 107642836 TACCTATCACTACACAGGCTC 59 107642112 107642132 TTCTTATAGATGGCAATGCCC 58 NA Rattus norvegicus 81 Rint1 ENSRNOG00000022182 ENSRNOT00000035034 3 1 1 80 4 7878847 7878866 TGAAGACACTTGGCAAACTC 59 7874309 7878808 CTGATGAAATCGTAAGTACCTGC 60 NA Rattus norvegicus 81 Oog3 ENSRNOG00000033000 ENSRNOT00000055741 2 1 1 80 5 99043291 99043309 CTGGACACTTTGAAGGCTG 59 99042695 99043247 TCTGAGCTTGCACCTACTG 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851,ENSRNOT00000076892 1 3 3 86 13 77000142 77000160 CAAGACGAAAGCGACTCAC 59 77000206 77004118 TACTGTCATCTGAGATACGAGAC 59 NA Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 1 1 1 117 3 8657206 8657224 CCCTGGATGGAGAACTGTG 60 8657002 8657125 AGAACTGGAGACCAGACCA 60 NA DesignNoJunction Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 2 1 1 118 3 8657206 8657224 CCCTGGATGGAGAACTGTG 60 8657001 8657124 AAGAACTGGAGACCAGACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911763 ENSRNOG00000020801 ENSRNOT00000002054 3 1 1 81 1 251336256 251336418 GGGATATGGTGTGATCTTTGC 59 251336195 251336213 CCCGAAGTTTCTCATGGTG 59 NA Rattus norvegicus 81 Flg2 ENSRNOG00000050967 ENSRNOT00000074518 1 1 1 80 2 193483860 193483878 AAGAATGTGGCACACTGAG 58 193483919 193484684 CATCTGGATTCTTCAGAATTGG 57 NA Rattus norvegicus 81 RGD1306926 ENSRNOG00000036699 ENSRNOT00000054974 3 1 1 80 10 109542841 109544716 TCAGACGAATAAAGACGATGG 58 109542781 109542801 GCTGTAAATACTGCATACGGA 58 NA Rattus norvegicus 81 Kpna7 ENSRNOG00000042296 ENSRNOT00000038175 1 1 1 80 12 11374373 11378324 CTTATCTCCTCCAGCAGATAGAC 60 11378363 11378382 TTTCAAAGCCACCAACTTCC 59 NA Rattus norvegicus 81 Heatr4 ENSRNOG00000038183 ENSRNOT00000058127 3 1 1 80 6 107447923 107447943 GAGAATGTTACTTGGGAGCTG 59 107446642 107447883 CCATTCAATAATGAGTGCCCA 59 NA Rattus norvegicus 81 Olr584 ENSRNOG00000005742 ENSRNOT00000007553 1 1 1 60 3 75879195 75879215 TGCTTCTGTGGGTCTAATGAG 60 75879155 75879178 GTACTAACACTGGAGGAATATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txlnb ENSRNOG00000060021 ENSRNOT00000089066 1 1 1 80 1 12954818 12957775 AGCAGGAAATGGATAATACGAC 58 12957814 12957834 AATTCTCAAATCGGGCTTTCC 59 NA Rattus norvegicus 81 RGD1308564 ENSRNOG00000043116 ENSRNOT00000065701 2 1 1 80 10 43727753 43727771 GGGTTACTCAGTCAAAGCT 57 43727812 43728956 TCTTCCACAATCTTTCTCAGAG 58 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000076120,ENSRNOT00000003689 1 3 5 60 13 78760337 78760358 GAAGATGGTTCTGCATTATCAC 58 78760379 78760397 GCTCCAGTCTTTGTACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000075838,ENSRNOT00000003689 2 3 5 99 13 78771700 78771719 TAAAGCTAGACCACCTGAGC 59 78772321 78772340 ACCATCTGAATTGGTTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Cd40 ENSRNOG00000018488 ENSRNOT00000055148 2 1 1 80 3 161530535 161533114 GATACCCTCTGTGGTTTCC 57 161533156 161533176 AAAGATGGTGATGAGGATGAC 58 NA Rattus norvegicus 81 Awat2 ENSRNOG00000003030 ENSRNOT00000076097 3 1 1 80 X 70256725 70256746 TGTCATCCATCTTACTAGTGGA 58 70227535 70256684 CAGTGATGACTGTCTGGTG 58 NA Rattus norvegicus 81 Acsl4 ENSRNOG00000019180 ENSRNOT00000026057 1 1 1 80 X 113623950 113625325 AGTACAACTTTCCGCTTGTG 59 113623889 113623910 AAGCCTCAGACTCATTTAATCC 58 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995,ENSRNOT00000084066 3 2 2 95 10 13555951 13555969 ATTTGGTCCTGGATCCCTG 59 13555231 13555895 GAAATAGAACCTGCTTAGGCTG 59 NA Rattus norvegicus 81 Defb23 ENSRNOG00000023477 ENSRNOT00000032030 3 1 1 89 3 147928624 147932363 GGAATCAGAATTTATGGTGGTG 58 147928556 147928574 TTCTGTACCTGGGTTTCCT 58 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 2 1 1 60 7 15482986 15483372 GGTTAAGTTTCCATACCGGC 59 15482945 15482963 TTGAGGCTGCTGTAATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 C4bpa ENSRNOG00000004062 ENSRNOT00000005461 3 1 1 80 13 47365357 47365375 CTCCATTACCTGCACTGTG 58 47361958 47365316 GGACAGATGATTCTTTCACAGG 59 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 1 1 1 66 2 156792558 156807073 TAAGTTCAGCTCCCAGAGG 58 156792510 156792528 AAGTCTCCCTGGGTAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Harbi1 ENSRNOG00000043204 ENSRNOT00000065462 3 1 1 83 3 80617050 80622649 TAGCTGGCTTCTTGGTGAC 60 80622695 80622714 TACTCTGCTGGAGTTTCAGG 59 NA Rattus norvegicus 81 LOC678798 ENSRNOG00000022737 ENSRNOT00000039130 2 1 1 80 1 201811306 201812878 AGGAGTCAGAAGAAAGACCAG 59 201812920 201812938 CCTGATGGAGGATCTCCAC 59 NA Rattus norvegicus 81 Edem1 ENSRNOG00000055365 ENSRNOT00000088273 3 1 1 80 4 140899944 140901085 CACGATAAGGGTTCTGGGA 59 140901128 140901147 ATTGTCATGTCACCAAAGGG 59 NA Rattus norvegicus 81 Scgb3a1 ENSRNOG00000002718 ENSRNOT00000051916 1 1 1 60 10 35133581 35133599 CACCGCCATCTTTCTAGTG 58 35133623 35134267 GAAGAAAGCAACGCCAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Usp44 ENSRNOG00000005637 ENSRNOT00000007465 2 1 1 80 7 34752791 34757894 AGCGATTCAGATGGTCAGG 60 34757935 34757956 GCTCCATGTTTAAGGTTTCCTC 60 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000059073 3 1 2 80 6 108024434 108024455 CAGTGGTTTAAAGAAGGAAAGC 58 108026791 108029796 GGATTGGAATGCAACTCCC 59 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000089991 2 1 2 80 7 92241631 92241650 AGCTACGACTGGTCTATGAC 59 92241690 92244873 CATATGGAATCAGTTGCTCCAC 60 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 2 1 3 100 14 85968304 85968324 AGTGGAATTACTGGTCAAAGG 58 85965407 85967754 ATTCCAAATCTGCAATTGCC 58 NA Rattus norvegicus 81 Ptar1 ENSRNOG00000014891 ENSRNOT00000054775 3 1 1 80 1 241522003 241522022 TCCCAGCAACTATAATGCCT 59 241522062 241554814 TCAAGAAGGATCTTCAGATCCA 59 NA Rattus norvegicus 81 LOC691352 ENSRNOG00000038422 ENSRNOT00000058517 3 1 1 80 10 44241035 44241055 ACATGCAGCACAATAACTACC 59 44239030 44240995 AGAAGATTGATCTGTACCGGT 59 NA Rattus norvegicus 81 Ccer2 ENSRNOG00000046971 ENSRNOT00000075601 2 1 1 85 1 86938607 86938625 CTAGCAGAGGTGGTGATGG 60 86938671 86938997 TCGAATATCTCTTTGTGGAGCA 60 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093,ENSRNOT00000067866 1 2 2 80 10 46621127 46630469 TACTACAGGAGTTGAACAGAACC 60 46621069 46621087 CCTCCTCATTGGACACTCG 60 NA Rattus norvegicus 81 AABR07013464.1 ENSRNOG00000023965 ENSRNOT00000041583 2 1 1 80 2 238369549 238369567 GGAGAGGGATTACCTCACG 59 238340218 238369505 AGCCTGTCAATCTGTTTGC 59 NA Rattus norvegicus 81 Itm2a ENSRNOG00000002365 ENSRNOT00000003265 3 1 1 80 X 78492525 78492759 ACTTTGAGAAGGGAATGACTG 58 78492465 78492484 TCACAATGGAAGTGTTGAGG 58 NA Rattus norvegicus 81 Ei24 ENSRNOG00000030391 ENSRNOT00000046590 2 1 1 80 8 39260482 39260500 TTTCAGTGCTCTTTGGGTG 58 39260034 39260441 AAGTCAGCTATATCTTGGAACC 58 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 2 1 2 131 4 84660384 84660403 CCAGGTCAGAAGATTTACCC 58 84670002 84673946 GAGTGCCTTTAGAGATAACTGAG 59 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 3 2 2 80 10 71400501 71400519 GCTCTCAGAAGTTCTCCAG 57 71399758 71400457 CCAGAATCAATGTCAGCCT 58 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 3 1 1 93 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104821353 104884852 ATATACAGTAATGCACAGCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 2 2 2 84 10 67476596 67477097 TGGAAGAGATTTCTTCAGTCGT 60 67476533 67476554 GTGTTCTGAATGGAAAGTCCTG 60 NA Rattus norvegicus 81 Aftph ENSRNOG00000005411 ENSRNOT00000056944 1 1 1 80 14 104932069 104933527 CTTACTAACCCTTTAGATGCTAGTG 59 104932013 104932031 AGAGCTACTGTCATCCACG 59 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 3 2 2 80 7 35532159 35535148 GAGGTACAGGTATGAGCGAC 60 35535190 35535209 TGCTTCAGGTTAGCTGTCTC 60 NA Rattus norvegicus 81 B3gnt8 ENSRNOG00000020606 ENSRNOT00000027964 3 1 1 81 1 82420101 82420121 GGCTGGAAAGATAACAGACTC 59 82420164 82420882 CTGGTGAGACTGGTTTGGA 59 NA InUTR Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 3 1 1 104 3 162034201 162034219 GAAAGAGTGGCAGTTGCTG 60 162033686 162034134 GGTTTGGTTATACTGTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1245 ENSRNOG00000052884 ENSRNOT00000078277 2 1 1 60 4 1591468 1591489 GTGACTGAATTCATTCTACTGG 57 1591510 1591528 GGAACAAGGGTAACTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp358 ENSRNOG00000000974 ENSRNOT00000001289 1 1 1 238 12 2046499 2046517 GAACTACAAGTCCCAGCAG 58 2048782 2048800 ATCCTGGAAGTAGAACCGC 59 NA DesignNoJunction Rattus norvegicus 81 Ergic3 ENSRNOG00000031085 ENSRNOT00000045484 3 1 1 83 3 151555717 151555735 AGTGTTTGACCCAGACTCC 59 151555776 151556436 CTGTTACAGCACTTGATATCTTCTG 60 NA Rattus norvegicus 81 Pafah1b2 ENSRNOG00000057102 ENSRNOT00000082508 2 1 1 80 8 50260659 50264439 TTGTACTGGGTCTGTTACCT 58 50260598 50260616 CCTTGAGAAGCTGGTTCAC 59 NA Rattus norvegicus 81 Gnas ENSRNOG00000025889 ENSRNOT00000035916 1 1 1 175 3 172376064 172376082 CTAATGGGTGACTCCGTCC 60 172427180 172428037 GGGTAATAGACTCCATCGCT 59 NA InUTR Rattus norvegicus 81 Akr1c12 ENSRNOG00000033010 ENSRNOT00000041925 1 1 1 80 17 69707345 69708653 CAGTGCCAATAAAGTCAAGTG 58 69707285 69707305 CACAGAAATCCACAGTATCCA 58 NA Rattus norvegicus 81 Atad3a ENSRNOG00000018118 ENSRNOT00000045053 3 1 1 80 5 173197868 173197888 AGATAAGTGAAGACCTCAGGG 59 173196778 173197830 GGACCAGCATGAACTTATTACTG 60 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 3 2 2 80 7 27089364 27089385 CTTCTCAACTAGGGATTTCTGC 59 27089425 27091024 TGCTGTCCTCAGTATCATCG 59 NA Rattus norvegicus 81 Prdm12 ENSRNOG00000009218 ENSRNOT00000012234 2 1 1 83 3 10193011 10194384 TGTGGGAGGTATTCAACGA 58 10192946 10192964 TGTAGGTCATCCAGCTTCG 59 NA Rattus norvegicus 81 Wdr70 ENSRNOG00000013336 ENSRNOT00000060146 2 1 1 80 2 56996375 56996393 ATGCACCTGGTACAGACAC 60 56994345 56996333 ATGTATCATCACCTCCACGAG 60 NA Rattus norvegicus 81 Tssc1 ENSRNOG00000009285 ENSRNOT00000060185 1 1 1 80 6 48030562 48030580 CGGAAACAGATGCCATTCG 60 48030618 48036932 CATCAAAGTCTATGATGTGGATCTG 60 NA Rattus norvegicus 81 Oacyl ENSRNOG00000024640 ENSRNOT00000066659 1 1 1 80 18 61408963 61408981 CCGCTGTACCTCTACTCTC 59 61409025 61414438 TGCACTTAACCAACCACTG 58 NA Rattus norvegicus 81 Actn2 ENSRNOG00000017833 ENSRNOT00000024098 2 1 1 80 17 66339700 66342234 TCAGTGGAAGAAACATCTGC 58 66339639 66339659 GATGTTCACATTTCGGTATGG 58 NA Rattus norvegicus 81 S100a7a ENSRNOG00000033352 ENSRNOT00000051365 2 1 1 106 2 190058188 190059271 AGAGCAACAGACTCTCCAC 59 190059341 190059359 GGAGTCCTCTACTGGTGTG 59 NA InUTR Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 3 1 1 81 20 2485179 2485197 GAGGACTTACCTGCTACGG 59 2485242 2485782 ATAAGAGCGCAGCAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Oxtr ENSRNOG00000005806 ENSRNOT00000007724 2 1 1 97 4 144415234 144415252 ATCGTACTGGCCTTCATCG 60 144403614 144415173 ATGAAGGCAGAAGCTTCCT 59 NA Rattus norvegicus 81 Endog ENSRNOG00000016033 ENSRNOT00000021531 3 1 1 60 3 8743454 8743472 ACGTTTATGTCTGCACAGG 58 8744117 8744135 TAGGACTTCCCATCAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Cbll1 ENSRNOG00000007253 ENSRNOT00000009566 2 1 1 81 6 50782465 50786768 TGGATCACACTGACAATGAG 58 50782403 50782422 ATAGGAATTCTTCTGCGGAC 58 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 1 2 2 109 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126478 AGCCTTATATCATTTGCCCTG 58 NA InUTR Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 3 2 2 111 7 35125530 35125549 AGTTCAGAATGGAGCAACTG 58 35125621 35126478 AGCCTTATATCATTTGCCCTG 58 NA InUTR Rattus norvegicus 81 Gmnc ENSRNOG00000038505 ENSRNOT00000058701 3 1 1 80 11 77241098 77241116 TTTCCCTGTTCCTGACTCG 59 77241155 77242082 GTATCCTGGAGCTGTTTATTTCTG 60 NA Rattus norvegicus 81 Cdk8 ENSRNOG00000039819 ENSRNOT00000061105 3 1 1 82 12 10497445 10499007 ACTATCAGCGTTCCAATCCA 59 10497382 10497400 TGAGTATCCCATGCTGCTC 59 NA Rattus norvegicus 81 Cyp26c1 ENSRNOG00000030698 ENSRNOT00000030962 3 1 1 89 1 256374115 256375816 CAAGAGCTGAAGGAGTTGG 58 256375869 256375887 CAGAAGCAGCAGGATAAGG 58 NA Rattus norvegicus 81 Fndc3a ENSRNOG00000014478 ENSRNOT00000066888 3 1 1 80 15 54398805 54399449 TGAATTGGGAGATTCCTTTGAG 59 54398746 54398766 GCATACTTCCTTCAACTCCTC 59 NA Rattus norvegicus 81 LOC499770 ENSRNOG00000025711 ENSRNOT00000030623 1 1 1 80 3 8746476 8746497 AGATTGATAAGAAACTGGACCC 58 8746323 8746435 TGTACGTCTTGCATTCTGG 58 NA Rattus norvegicus 81 Hcfc1r1 ENSRNOG00000003542 ENSRNOT00000004702 3 1 1 81 10 12994750 12994768 CTCTTGGCCTGGATACCAG 60 12995291 12995309 CTGAGTCGGGAGAAATGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC685171 ENSRNOG00000058543 ENSRNOT00000084484 1 1 1 60 4 45854586 45854604 GCAGGTAGACATCAGTCCC 60 45854625 45854646 TCTTGATCGTAGGAAATCCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssu72 ENSRNOG00000017829 ENSRNOT00000024349 3 1 1 80 5 173181712 173182165 TTGTAGAAGATCTGAACTCCAG 57 173182206 173182224 CATGGTTGTCCTGGATGTC 58 NA Rattus norvegicus 81 Olr13 ENSRNOG00000052361 ENSRNOT00000088514 2 1 1 60 1 149787139 149787160 GTACTTCCCATCAGTTACAGAC 58 149787100 149787120 TCCAAGAATGACAGATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 1 2 2 80 7 27231303 27231321 TGGATTCCGATGATCTCCC 59 27230358 27231262 GCTTCTTCCTAATCACCTTGAG 59 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 3 2 2 80 7 70961962 70962144 TCAGCTCAGATATGGTGTATCC 59 70962183 70962203 CACTCATGGACTCTTCTAGGG 59 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 3 3 3 80 8 100036605 100036626 AGTCCTGATGGATACTATGCTC 59 100036663 100038878 TGGGACATTCCATATTCCTACTC 60 NA Rattus norvegicus 81 Rad21l1 ENSRNOG00000022335 ENSRNOT00000055455 1 1 1 80 3 147172840 147172858 GGAAGGATGTGACTGACGA 59 147170714 147172797 CGAGGATGTCCTGCTTAGAG 60 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 1 1 1 60 17 62298107 62299610 TGTAATGTGACCATCATGGG 58 62298066 62298086 CCAGCATTCTTAGCAAGACTG 59 NA DesignNoJunction Rattus norvegicus 81 Gtf2h5 ENSRNOG00000018007 ENSRNOT00000024211 1 1 1 83 1 46979567 46983607 TTATAGAATGCGATCCCGC 58 46983651 46983672 CTTGAATGATGAACTTCTTCCC 58 NA Rattus norvegicus 81 Mrpl13 ENSRNOG00000004401 ENSRNOT00000005815 2 1 1 86 7 95294737 95294755 AGCTACTTATGGCATGCTG 58 95293662 95294689 TCTGGAATATCCTCATCAGGA 58 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 1 2 2 80 8 71648834 71648853 AGACTTGTTTGACCTCTGTG 58 71648895 71651346 TCCATTCGAGAAAGCAACTG 59 NA Rattus norvegicus 81 Mrpl45 ENSRNOG00000010540 ENSRNOT00000014752 1 1 1 80 10 85259874 85259895 TCATCTCTTTCAAAGGAAGGAC 58 85259935 85263032 CTTTCGAATTGCCAACTGTG 58 NA Rattus norvegicus 81 Klhl13 ENSRNOG00000014029 ENSRNOT00000018788 2 1 1 80 X 121608486 121625051 GTGTTACAGGGATTTGACCA 58 121608425 121608444 GGCATCATCTGTATCACCTG 58 NA Rattus norvegicus 81 Trim11 ENSRNOG00000002915 ENSRNOT00000047268 3 1 1 84 10 45325636 45325654 CTGCGGAAACAAATGGAGG 60 45325702 45326379 GGCTCTCCACCATCTTCTG 60 NA Rattus norvegicus 81 Kif11 ENSRNOG00000056069 ENSRNOT00000079726 2 1 1 80 1 256069553 256069571 TGGAAGAGTTGATCAGGGA 58 256069615 256072182 ACATCAGGTTACCGAACAG 57 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305,ENSRNOT00000084906 2 2 2 80 12 2148422 2150039 ATTACGACTTGAGGAGGTGTG 60 2150080 2150099 AAGTCTTGTACCAGCTGGAG 60 NA Rattus norvegicus 81 Gla ENSRNOG00000011513 ENSRNOT00000015494 2 1 1 80 X 105409073 105409091 CCTGGACAGTAACTCACCA 59 105408071 105409030 TGCCAATCACTAACATGTCTG 59 NA Rattus norvegicus 81 Prox2 ENSRNOG00000005054 ENSRNOT00000006704 3 1 1 86 6 108911884 108912310 GAATGACTTTGAGGTCCCAG 58 108911817 108911835 TCTTTCCCTGTGGAGACAG 59 NA Rattus norvegicus 81 Mief2 ENSRNOG00000028208 ENSRNOT00000023838 2 1 1 62 10 46972310 46972328 TTTCCAAGGCTTGGAAGCT 60 46972481 46972499 GTGAGAACTCTGCCATGGT 60 NA DesignNoJunction Rattus norvegicus 81 Nkap ENSRNOG00000053813 ENSRNOT00000089883 3 1 1 80 X 123754994 123755013 GAGAGGATTGGAGAATTGGG 58 123755054 123760029 TGTATGTTCATCAGAGTCTGG 57 NA Rattus norvegicus 81 Selk ENSRNOG00000014624 ENSRNOT00000020284 3 1 1 97 16 6036021 6038717 ACATCTCGAATGGTCAGGT 58 6038775 6038796 AACCACAAATTCTGCTATTCCC 59 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034069,ENSRNOT00000034075 1 2 2 80 18 61787101 61787119 GGGCTACATCCTTGAGGAC 60 61772013 61787057 GACTTCTCCTCATGCCCAG 60 NA Rattus norvegicus 81 LOC100912540 ENSRNOG00000047474 ENSRNOT00000045173 3 1 1 60 3 74814751 74814770 TGGTCACTGTCTTCTATGGG 59 74814710 74814728 GAATGACTGGATTTGGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262,ENSRNOT00000089538 1 2 2 80 10 66898914 66899632 CTGGTGTCAAGTAAGGTTATTGG 60 66899668 66899690 CTGTTCTAAAGTTGGAGTTGGAG 59 NA Rattus norvegicus 81 Pla2g4b ENSRNOG00000007447 ENSRNOT00000066685,ENSRNOT00000081897 1 2 2 80 3 111826709 111826727 GCACAGTCAAGAACAGCAG 60 111826769 111826911 CCATAACATTCTTGAGCTGCC 60 NA Rattus norvegicus 81 Snap47 ENSRNOG00000022472 ENSRNOT00000028948 3 1 1 102 10 45786818 45786836 AAAGGTCCTTCACCACCAG 60 45778619 45786754 CAACTCTGTCAGCAATCTGTC 59 NA Rattus norvegicus 81 Rpl36 ENSRNOG00000033473 ENSRNOT00000043704 1 1 1 60 9 10441345 10441447 CAAGTTTATCAAGAAGAGGGTGG 60 10441307 10441325 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000076958,ENSRNOT00000071067 2 2 3 80 12 24606764 24606931 GAAACCTGAGGCTGTTGTC 59 24606702 24606721 CTCCACTTGTGGTATTCACG 59 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 3 1 2 68 15 2813663 2966181 GTATCTGAGAAGCCAGCCA 59 2813613 2813634 GTGTACATCATGTTACTGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 3 2 2 80 19 38601994 38602014 ATCTTCAAACTGGAGCAAGGA 60 38602056 38607144 GGTCTTCCAGTCTGGACAG 59 NA Rattus norvegicus 81 Usp37 ENSRNOG00000022720 ENSRNOT00000032719 2 1 1 80 9 81750798 81750816 CAGGATTACACAGGCTGGA 59 81750046 81750755 TCCCAAATTGGAGAATCCCT 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 3 3 3 80 10 84630209 84631880 CCAACTTAACAGTTGCTGCT 59 84630148 84630167 TGGTCCTTCTCTTCACTGAG 59 NA Rattus norvegicus 81 RT1-M10-3-ps ENSRNOG00000051398 ENSRNOT00000039155 2 1 1 81 20 2291741 2291972 AGGACAGCAATGATTATCACAC 59 2291681 2291699 TATTGACCGCGAAGGAAGG 60 NA Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000034583 2 1 2 82 13 79081206 79084172 GGAGCAAGGACATCAATGC 59 79081142 79081160 GTCCCTGTCCTTATCGTCG 60 NA Rattus norvegicus 81 AC129365.1 ENSRNOG00000061358 ENSRNOT00000088499 3 1 1 82 2 147479606 147479628 GCTTACCCTCAGCTAGAGTC 59 147479670 147479691 TCGATTGCTTCAACTTTGTCTG 60 NA Rattus norvegicus 81 Pgf ENSRNOG00000005650 ENSRNOT00000007790 1 1 1 80 6 108999023 109003095 AACAGAAATGGAAGTGGTGC 59 108998962 108998981 GCAATGTACACCAGCTTCTC 59 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 2 3 3 100 12 17743323 17745689 AGAGAAGTATTGAGGAAGCCA 59 17745751 17745769 CAAGAAGTTGGCCGATGTG 60 NA Rattus norvegicus 81 Slc39a11 ENSRNOG00000031213 ENSRNOT00000042156 3 1 1 80 10 101983504 101983524 AAGAAGTCTGATCTCAAGGAC 57 101891695 101983463 ATTCTCACGCTTGTCTATCC 58 NA Rattus norvegicus 81 Zc3h4 ENSRNOG00000015229 ENSRNOT00000020509 1 1 1 80 1 78383132 78383151 CTATGAGAACTTCTACCCGC 58 78383194 78387299 CAGTTTCCAGTGTCACCTG 58 NA Rattus norvegicus 81 Epm2a ENSRNOG00000040242 ENSRNOT00000061930 2 1 1 80 1 5449251 5505164 CTGGGAAGGAAATGGACCT 59 5505206 5505226 GGGAGACAATAAACACCATCC 59 NA Rattus norvegicus 81 LOC686677 ENSRNOG00000046185 ENSRNOT00000071281 1 1 1 60 3 76179817 76179838 TCACTTTCCACTATGAATGCTG 59 76179858 76179877 TGAACACATATGACAGGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 2 3 3 80 3 2514181 2514274 GTCAAGAAGGAGATTCCCAG 58 2514120 2514138 CAGTCCTACTAGCAACCAC 57 NA Rattus norvegicus 81 Pdpk1 ENSRNOG00000006136 ENSRNOT00000067660 2 1 1 80 10 13472742 13472760 AACGAAGACATGCACATCC 59 13470379 13472699 ATTGGCTCTAGCTTGTTTGC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346,ENSRNOT00000025993,ENSRNOT00000090453 3 3 4 85 17 72241143 72247227 CTCTGAACTCTATGGCCGA 59 72247274 72247294 CTAGTTCGTGCAGATTAACCC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802,ENSRNOT00000041346 2 2 4 80 17 72226715 72226738 CAAGTCTGTTATCTCCTACAAGAC 59 72226777 72227837 ATGCTCATGTTCTCAGCAG 58 NA Rattus norvegicus 81 Olr790 ENSRNOG00000050791 ENSRNOT00000046527 2 1 1 60 3 103399573 103399592 ACATTCCTCAAGTGGTTCCT 59 103399532 103399551 CACAACAGAGATGTGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss32 ENSRNOG00000029223 ENSRNOT00000071525 2 1 1 80 10 13197685 13199132 CACTGCTTTAACCAGGACC 59 13199175 13199194 CTCATTGTCCTCAGGGTAGG 59 NA Rattus norvegicus 81 Mien1 ENSRNOG00000007227 ENSRNOT00000009485 3 1 1 80 10 86392429 86392447 ATTGAGATCAATGGGCAGC 58 86392278 86392390 GATAGCTTCCATGAGATCTTTCTC 59 NA Rattus norvegicus 81 Thumpd1 ENSRNOG00000014946 ENSRNOT00000020077 2 1 1 81 1 189459586 189460603 AAGAGTTGGCAGGAATAGTAGG 60 189459526 189459547 TCTACTACCACCGTGTATTCTG 59 NA Rattus norvegicus 81 Pin4 ENSRNOG00000050051 ENSRNOT00000073157 1 1 1 85 X 72004566 72007658 AAAGGAGGGAAAGGAGGTG 59 72007707 72007725 TTTACTGCATTGCCACCAC 59 NA Rattus norvegicus 81 Rn60_5_1607.1 ENSRNOG00000027882 ENSRNOT00000036895 1 1 1 60 5 156897664 156897682 ATCCGACACCATTCACCTC 60 156897705 156897724 ACGACTTTGATCTCATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra1b ENSRNOG00000060087 ENSRNOT00000087937 3 1 1 115 10 29449475 29449496 TTCCAACTCCAAGGAGCTG 60 29449372 29449392 AAAGTTTGACAGCTATGGCAC 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719,ENSRNOT00000052333 3 3 3 82 4 33639424 33639442 TGTTTGCAGAGGAAATCGG 59 33639487 33640445 CATTGCCTCCTTGATTTGGT 59 NA Rattus norvegicus 81 LOC679683 ENSRNOG00000031585 ENSRNOT00000042949 2 1 1 60 3 117854097 117854117 AGAGAATGTATCTGGTGTCTG 57 117854136 117854157 AACATGGACAAAGGTATCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl36 ENSRNOG00000047971 ENSRNOT00000072992 3 1 1 60 1 32570362 32570381 GTAGAGACTGCTACATGGTG 58 32570321 32570339 GGGTTGGTCTTACAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr137c ENSRNOG00000026328 ENSRNOT00000036235 1 1 1 80 15 19612005 19613301 GGGATAATCTTTCAGATAAGGCTC 59 19613339 19613358 ACAGAAAGAGGACCATTCCG 60 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 3 3 3 81 11 67251993 67252011 GCCAAGAAGGGAGAAAGAC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 AABR07002775.1 ENSRNOG00000048489 ENSRNOT00000072734 3 1 1 60 1 84758979 84758998 TGAATGTAAGCAGTGTGGGA 59 84759020 84759039 ATCGTAGTGTCGTAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nono ENSRNOG00000003689 ENSRNOT00000004911 3 1 1 80 X 71339939 71341238 TGGAACCCTTGGATTGACTC 60 71341280 71341299 CCACCAATTGCTCCAATTCC 60 NA Rattus norvegicus 81 Bdh1 ENSRNOG00000001736 ENSRNOT00000002366 2 1 1 80 11 72581598 72587682 ATCCTGAGAAGGGAATGTGG 59 72581537 72581556 TCTCCATGCTAGTGAACTCC 59 NA Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510,ENSRNOT00000083831 2 2 2 80 18 59069779 59070915 GGACCAGATAATGGTCAGGG 60 59069718 59069736 TTCTGCCTCCTCAAAGTCC 59 NA Rattus norvegicus 81 Rn60_X_0698.2 ENSRNOG00000023879 ENSRNOT00000035857 3 1 1 60 X 68874277 68874295 CGTGGACATCGTTTATCCC 58 68874235 68874254 ATCCACCACATCAGACTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf18 ENSRNOG00000022012 ENSRNOT00000038747 1 1 1 80 5 173461685 173461703 ACTGTGAAGACCCTCAGTG 59 173461743 173462295 TAATATTCCCTTGAGACTCCACC 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000049910 ENSRNOT00000073109 1 1 1 83 8 37557116 37557765 GCTTCCTACAAGCTCTGAC 58 37557808 37557830 CTTTACAGGTAGAGTATCCTGTC 58 NA Rattus norvegicus 81 Lrfn3 ENSRNOG00000020839 ENSRNOT00000028275 1 1 1 80 1 88820046 88823497 CTCGTTTACAGGATGATCCCA 60 88819986 88820005 ACACAGATCATAGGTACGGC 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669,ENSRNOT00000019244 3 2 2 81 2 226696156 226696175 AAACAGGTGTGAGAGGAGAC 59 226694064 226696112 CTTCCCTCAGGGCTTTCTC 60 NA Rattus norvegicus 81 Gatm ENSRNOG00000000168 ENSRNOT00000000181 1 1 1 80 3 114726691 114726712 CTTTAGAGGAAGTGATAGTGGG 58 114720952 114726652 CATATGTATTGGCCTTCACCT 58 NA Rattus norvegicus 81 Atpif1 ENSRNOG00000013300 ENSRNOT00000018038 3 1 1 89 5 150719829 150722992 GGATCGGTACTTCCGAGAG 59 150719758 150719777 ATCTCCTTCGAATGGTGGTC 60 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 2 2 4 61 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231069 50232915 GCCATCACAGGTTTGTTAGG 59 NA DesignRelaxed Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000087057 2 1 4 60 5 50232937 50232955 AACCTTGTTTCGAGCTGTG 59 50232244 50232916 TCATGGTTGATACAGAACAGGT 60 NA DesignRelaxed Rattus norvegicus 81 Prdm5 ENSRNOG00000023679 ENSRNOT00000009569 2 1 1 80 4 96739886 96739906 AAGAGAAAGCTCATATGCTCG 58 96739947 96744228 CTCATGAATCTTCCTGTGCT 58 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 1 2 2 80 7 143692856 143692970 CTATGACCGAGGCTATGACTC 60 143693012 143693030 CTGTAGTCGTCATCCCTCC 59 NA Rattus norvegicus 81 Shisa7 ENSRNOG00000016877 ENSRNOT00000022698 1 1 1 101 1 72559154 72559172 GATCCTTCCACAACCTCTC 57 72559236 72559719 GATCTTTCTCAGCCAGTCTC 58 NA Rattus norvegicus 81 Lrrc25 ENSRNOG00000022565 ENSRNOT00000031692 3 1 1 60 16 20561616 20561634 CCGAGGATTGTTCATGGTC 58 20559742 20559762 ATGTAGCAGTCATTGTCTCCA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000068147 2 1 4 88 1 215109217 215109235 TCTTCTTGCTGTCAGTCCA 59 215057753 215057771 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tas2r102 ENSRNOG00000030993 ENSRNOT00000050359 2 1 1 60 4 166924058 166924076 ATCCTGACGCAAAGGACTC 60 166924100 166924118 CCTCACTTGTGTTTCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir34a ENSRNOG00000035623 ENSRNOT00000053746 2 1 1 60 5 167092506 167092524 TCTTTGGCAGTGTCTTAGC 58 167092547 167092566 ATACTTGCTGATTGCTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmx4 ENSRNOG00000024852 ENSRNOT00000034567 1 1 1 83 3 127545264 127561966 CAAGAACCAGGTTTGAGTGG 59 127544496 127544514 GTAACGGCGGAATATCCCA 60 NA Rattus norvegicus 81 Mir15b ENSRNOG00000035483 ENSRNOT00000053606 1 1 1 60 2 165605939 165605957 CTGTAGCAGCACATCATGG 59 165605979 165605999 GAGCAGCAAATAATGATTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499306 ENSRNOG00000054336 ENSRNOT00000077274 2 1 1 81 1 221578509 221583712 AGCTGGAGGATTCTATCCG 58 221583754 221583775 GGAAACACAATGAAGTGTTCTG 59 NA Rattus norvegicus 81 Abi2 ENSRNOG00000017707 ENSRNOT00000050179 1 1 1 80 9 67282021 67282039 TGATGGTTGGTATGAGGGA 58 67282082 67282103 CCGAATAATGCATGATGCTC 58 NA Rattus norvegicus 81 Gpatch2l ENSRNOG00000010227 ENSRNOT00000013602 3 1 1 80 6 110096528 110096548 AAGGAAAGAAAGGATGGAGTG 58 110096589 110109292 CTGCTAGTTTCACTTTCGGA 58 NA Rattus norvegicus 81 Olr558 ENSRNOG00000048361 ENSRNOT00000071725 1 1 1 60 3 75379843 75379862 TCTGGTTATGAACCCAACGA 59 75379885 75379903 AATACCACCAAGCCAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r7 ENSRNOG00000061043 ENSRNOT00000091192 1 1 1 60 1 60088121 60088141 GAATTGCCAGATGTATGTCCA 59 60088081 60088101 GTGATTGCTTGAAAGACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phlpp2 ENSRNOG00000016108 ENSRNOT00000021744 1 1 1 80 19 41740519 41741149 CTCAGATTCAGTTTGTTGACCT 59 41740460 41740478 CTTGTAAAGTGGCAGGCAG 59 NA Rattus norvegicus 81 Tas2r129 ENSRNOG00000031107 ENSRNOT00000051110 3 1 1 60 4 167024775 167024793 AAGATGCAACAACATGCAC 58 167024733 167024753 AGACTTTGATGTGAGCATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chaf1a ENSRNOG00000046479 ENSRNOT00000071107 2 1 1 80 9 11010474 11010492 TGAGAAAGAGAAGGCGGAG 59 11009367 11010430 TCCAGTTTAGCCTCCAGAG 58 NA Rattus norvegicus 81 Scnm1 ENSRNOG00000021092 ENSRNOT00000028639 2 1 1 82 2 196303062 196303184 AAACTGAGGCTCCTTTGCT 60 196302998 196303016 GCAGCAGCTGTTATAGTGG 59 NA Rattus norvegicus 81 LOC100910893 ENSRNOG00000048609 ENSRNOT00000049527 1 1 1 60 3 77261606 77261627 CTACAATGAATGTATGACGCAG 58 77261648 77261666 AAAGATCTCCATGCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsdma ENSRNOG00000007943 ENSRNOT00000048349 2 1 1 80 10 86589146 86589165 TCCCACACGTTTACAATGAC 59 86589557 86590074 CCTGGATCAGTATGAACTTCC 58 NA Rattus norvegicus 81 Stk16 ENSRNOG00000019294 ENSRNOT00000026194 1 1 1 80 9 82413650 82413668 TTCCAGAAAGGTGACAGTG 57 82413712 82413839 CAATGCTGAAGAATGCCTG 57 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 3 2 2 80 6 53728201 53732264 CACTCCTAGGTGATGATTCTC 57 53690046 53690064 TCCAAATGGTGTCACTGTC 58 NA Rattus norvegicus 81 Ice1 ENSRNOG00000023053 ENSRNOT00000061873 2 1 1 80 1 35294658 35294906 TTTAGGAAGACACAGGAAAGAC 58 35295028 35295049 GATTTGTGTTCCAATGTGTCTC 58 NA Rattus norvegicus 81 Ccdc134 ENSRNOG00000007262 ENSRNOT00000056048 2 1 1 80 7 123366408 123369274 CTGAAGGATGCTTTCTCCCA 60 123369316 123369335 GTGTACAATCTTCGGGAAGC 59 NA Rattus norvegicus 81 LOC102553814 ENSRNOG00000042321 ENSRNOT00000067452 1 1 1 72 3 64554873 64554892 GGGACCAGTTCAGTAAAGAG 58 64554820 64554838 GAGTTCAGCTGGATGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454,ENSRNOT00000066455 1 2 2 87 1 219863070 219863327 CCTGCTGCTAACTATGATCCT 60 219863003 219863021 AACCTTCAGCCCATCTGTC 60 NA Rattus norvegicus 81 Taf1c ENSRNOG00000015632 ENSRNOT00000020990 1 1 1 80 19 52250438 52250527 ATGTCACTGAGCAGCTCAG 60 52250376 52250394 TCTCCAGCATGAGTTTCCC 59 NA Rattus norvegicus 81 Rpp38 ENSRNOG00000038025 ENSRNOT00000057855 3 1 1 87 17 78915703 78916033 CTTCTGCACAGCATCTCTG 59 78916083 78916102 GAATTCCTTCCGAAGGAAGC 59 NA InUTR Rattus norvegicus 81 Gpr107 ENSRNOG00000023589 ENSRNOT00000037742 2 1 1 80 3 10662715 10663878 TCCATGCAATCGACTACCA 59 10662653 10662676 GGTGAGTTATGTAGTACACAACAG 59 NA Rattus norvegicus 81 RGD1559441 ENSRNOG00000024953 ENSRNOT00000042810 3 1 1 80 5 24892924 24892943 GAAGATGCCTTGGATGATCG 59 24892986 24894895 CTTGTCTGACCAACCTCCT 59 NA Rattus norvegicus 81 LOC100912290 ENSRNOG00000048735 ENSRNOT00000072147 2 1 1 60 4 170092805 170092823 AAGGTCTGGGTAAAGGTGG 59 170092763 170092781 CCCTGGATGTTATCTCGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912290 ENSRNOG00000048735 ENSRNOT00000072147 3 1 1 60 4 170092808 170092826 GCAAAGGTCTGGGTAAAGG 59 170092766 170092786 TGGATGTTATCTCGGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910858 ENSRNOG00000050271 ENSRNOT00000041690 1 1 1 60 3 77337897 77337917 TGGACATTTGCTATACCTCCT 59 77337938 77337957 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl28 ENSRNOG00000017127 ENSRNOT00000058943 2 1 1 87 1 72621481 72621499 ATCTGCAATGGATGGTCGT 60 72621330 72621431 TTCAGATTATTGGGCTCCGT 59 NA Rattus norvegicus 81 Olr528 ENSRNOG00000061596 ENSRNOT00000013150 3 1 1 60 3 74475330 74475351 TAGATGTTCAACTTCACACTCC 58 74475291 74475310 AGGTCAAGGAAAGACAAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl2 ENSRNOG00000002792 ENSRNOT00000003745 1 1 1 80 14 18733081 18733101 TGACTTCAAGAACATCCAGAG 58 18732903 18733042 TTAAGAGTGGCTATGACTTCTG 58 NA Rattus norvegicus 81 LOC100362601 ENSRNOG00000028909 ENSRNOT00000049011 2 1 1 97 1 225761762 225764646 GCTATGAAACTAATGCTGGC 57 225764706 225764724 CTCAAGTTCCTTCCTCAGG 57 NA Rattus norvegicus 81 Lzts1 ENSRNOG00000011826 ENSRNOT00000015799 1 1 1 82 16 22295794 22297894 CTGGAAATGAGTTCAGACAAGG 59 22297937 22297955 GAGTGGAGAATGGCTCCTG 60 NA Rattus norvegicus 81 LOC100911427 ENSRNOG00000048437 ENSRNOT00000071906 1 1 1 82 9 88748581 88748599 AGAGTATGCACACTGGCTG 60 88747958 88748536 TTGGGTGAGCTATCACTCTG 59 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554,ENSRNOT00000015775 3 2 2 80 3 94363070 94364012 CTGGTTGGAGGTTAAAGACAC 59 94363010 94363031 TGAATATGTACTTTCTGGCCTC 58 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 1 2 2 80 1 220470241 220470896 ATATGGAGTCCACGGTTCC 59 220470938 220470958 TAACCACCACTTGTATCATCG 58 NA Rattus norvegicus 81 Kcng1 ENSRNOG00000054314 ENSRNOT00000081648 2 1 1 73 3 165026960 165026978 CTGTCAACCTGTCTGTCAG 58 165021761 165021779 GCACATTTGGGAACACTGG 60 NA DesignNoJunction Rattus norvegicus 81 AC142182.1 ENSRNOG00000028417 ENSRNOT00000038833 1 1 1 237 10 86282020 86282038 TAACTTCCTCACGGAGCAG 59 86281795 86281813 CTCGGAGCTGTTGTAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Olr267 ENSRNOG00000049197 ENSRNOT00000075297 1 1 1 60 1 172729124 172729144 GTTGAACCCTCTCATCTACAG 58 172729166 172729184 ATGTTTCTTCAGAGCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 3 2 2 81 8 5994191 5994410 CATCTGTAACGGTTTCAGCA 59 5994454 5994472 ATACCACCAACAAAGCTGC 59 NA Rattus norvegicus 81 Slc25a25 ENSRNOG00000014338 ENSRNOT00000020206 2 1 1 84 3 11445272 11445290 ATCCACGAAAGGCTAGTGG 60 11445119 11445224 TTCGGGTCTTCAGAACCTC 59 NA Rattus norvegicus 81 St6galnac2 ENSRNOG00000012083 ENSRNOT00000016622 1 1 1 80 10 105660546 105660568 CAAGAGCTGTGGAATAATCTGAG 59 105659937 105660507 GGTAGAGGCAATGACTTTCC 58 NA Rattus norvegicus 81 Olr804 ENSRNOG00000017906 ENSRNOT00000024076 3 1 1 60 4 71957899 71957921 TCACACCACTTCTATATCCTCTC 59 71957861 71957879 ATGGCAGAAGTGATCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 3 2 3 80 7 42331547 42332266 TAGGTCCTGAGAAAGATTCCA 58 42332308 42332326 CATTCCTAAGGGAACTGGC 58 NA Rattus norvegicus 81 Ttc17 ENSRNOG00000010495 ENSRNOT00000014088 2 1 1 80 3 83238623 83248534 CCCTTAGACTTGAAAGCACAG 59 83238563 83238585 CTGACATCTTTGTTTCCTCTGAC 60 NA Rattus norvegicus 81 Zbtb24 ENSRNOG00000000308 ENSRNOT00000057175 1 1 1 81 20 46179086 46179104 TACCTGTGATCAGTGTGGA 58 46179149 46179944 TAGTGAGTGGCCTGTATGG 59 NA Rattus norvegicus 81 Scmh1 ENSRNOG00000032183 ENSRNOT00000078622,ENSRNOT00000045954 3 2 2 80 5 139401810 139401829 GTTGACTCCTCCGAAATCCA 60 139401872 139416779 CAGCCGAAATCCTAGAGGT 59 NA Rattus norvegicus 81 MGC112715 ENSRNOG00000000569 ENSRNOT00000057752 3 1 1 83 20 29914747 29914767 TTGCTGGTCTATAAGCAGAGG 60 29918024 29918780 GATTCCTTGGGTGTTGCTG 59 NA Rattus norvegicus 81 Wap ENSRNOG00000055684 ENSRNOT00000091193 3 1 1 80 14 86899244 86899960 CAACTCAGTTCAGTCCATGTG 59 86899184 86899202 CACTCCTCGTTGGTTTGAC 59 NA Rattus norvegicus 81 Zbtb48 ENSRNOG00000009595 ENSRNOT00000012745 2 1 1 80 5 169194827 169194847 GAAGTGTTACTTTCGCAAGGA 59 169194169 169194787 CATGTGAAGACCTGTTCTGAG 59 NA Rattus norvegicus 81 Six6 ENSRNOG00000006296 ENSRNOT00000008880 3 1 1 143 6 95817349 95817369 GTACCTTCAGGACCCATATCC 60 95817474 95818474 TGCTGGAGTCTGTTCTTGG 60 NA Rattus norvegicus 81 Sec14l5 ENSRNOG00000002917 ENSRNOT00000061253 1 1 1 80 10 10599526 10599544 GTCTGGGACAGATGGACAC 60 10599386 10599484 CGTTGACAGAAAGAACATGCT 60 NA Rattus norvegicus 81 Kxd1 ENSRNOG00000019971 ENSRNOT00000027053 2 1 1 81 16 20662292 20664683 AGGATCAGGACACTGAAGG 58 20665816 20665834 CCTCTAGGAGTGAACCCTC 58 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837,ENSRNOT00000090984 2 2 2 82 7 123095896 123100496 ACCATTCAGGAGAAGGATAGAG 59 123095835 123095853 TTGCGCTCATAGAACAGGT 59 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530,ENSRNOT00000027677 1 2 2 80 1 82104331 82104349 TATGCGTAAGCTGGACCAC 60 82104112 82104290 TACAGCTCATCTTTCTTCTCCC 60 NA Rattus norvegicus 81 LOC102553939 ENSRNOG00000045837 ENSRNOT00000041664 1 1 1 80 19 321601 321623 CAACTTAGAGATGGAGAACACTG 59 321662 322314 AGCAGGTTTCTAGAGAAGGT 58 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754,ENSRNOT00000088558 1 2 2 80 1 7385758 7385778 GGATGGACCCATCTTATACAC 58 7384252 7385716 CTTGCCAATGCACTTTCTC 58 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000015778 1 1 2 164 15 24267405 24267423 GCCAAACAAATGGGTTTCG 59 24267551 24332206 CATAACAGATGCCCTGTGC 59 NA InUTR Rattus norvegicus 81 Ube2d4 ENSRNOG00000034016 ENSRNOT00000049772 2 1 1 60 14 2934016 2934034 CCTTAGTGCCTGAGATTGC 58 2933974 2933995 GCTGTTCTGTTGTACTTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 1 2 2 82 1 87167612 87167853 TGCTTGTCACAGCATACCT 59 87167548 87167566 ATGGAGGTCAGAAACACGG 60 NA Rattus norvegicus 81 Clic3 ENSRNOG00000015184 ENSRNOT00000020497 1 1 1 87 3 2677944 2678043 ACATTGTGGATACCGTGTG 58 2678094 2678112 AATGCACTGTCCAAGTAGC 58 NA Rattus norvegicus 81 Pgap3 ENSRNOG00000046143 ENSRNOT00000075076 3 1 1 81 10 86344938 86344957 GACACATCTCCTACCTGAGC 60 86344782 86344895 AGATTCACCAGGCCTATAGC 59 NA Rattus norvegicus 81 Ppp1r9a ENSRNOG00000008869 ENSRNOT00000011756 2 1 1 80 4 30133429 30143115 AGTGGAACTGGAGAAAGATGAG 60 30143156 30143174 TTCTCCAGTCCAGCATCAG 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334,ENSRNOT00000026394 2 2 2 80 18 55797273 55797292 TCTCACAGCTCTACTTCTGC 59 55797333 55800018 AATAATGAGAGTCCACCTCGT 59 NA Rattus norvegicus 81 Ppef2 ENSRNOG00000052061 ENSRNOT00000077636 3 1 1 80 14 17307600 17308999 ACCATTCAGGGTTCATCTCC 60 17307539 17307562 CTGTGATGTCGATGTTCATATGAG 60 NA Rattus norvegicus 81 L2hgdh ENSRNOG00000004857 ENSRNOT00000006473 3 1 1 80 6 92034190 92037383 CTGTCAAGAATAGTAAGGGAAAGG 59 92034133 92034156 CTGAAATACGGTCTGAGTAAAGAC 59 NA Rattus norvegicus 81 Iqsec3 ENSRNOG00000014083 ENSRNOT00000018902 3 1 1 80 4 153959458 153959476 GCAGAAGTTCGTGGAAGAC 59 153957158 153959415 TCCAGTTCCCATTCTATCCG 59 NA Rattus norvegicus 81 Degs1 ENSRNOG00000003223 ENSRNOT00000004319 1 1 1 80 13 100669284 100672611 AGATCTTAGCGAAGTATCCAGAG 59 100669226 100669247 GAAGCATTGAGGTTACAATCCA 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 2 2 3 65 9 50968836 50968856 ACAGATGAATCCCTGTATCCA 58 50968883 50970326 ATCAATCCGTAGCTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1562510 ENSRNOG00000031251 ENSRNOT00000043897 3 1 1 60 15 19575615 19575633 TGAGACCTATCTGGTTGGC 59 19575573 19575592 ACATTTGACATGGCTAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnga4 ENSRNOG00000017609 ENSRNOT00000023751 1 1 1 80 1 170243002 170243153 CAACCAAAGCCAGGAAGTG 59 170243196 170243215 GGAAGACCATTGTGTTCAGC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 2 3 5 80 20 3408364 3408645 AACTGGCTCTATCAGTCCC 59 3408302 3408323 CTTCTCTTGTTCAGGATCAGTC 59 NA Rattus norvegicus 81 Camk1 ENSRNOG00000021781 ENSRNOT00000029728 2 1 1 80 4 145294774 145295769 CTTACACAAGATCAAGCACCC 59 145294714 145294733 TGCATGATGAGGTAGAGGTG 59 NA Rattus norvegicus 81 Kdm8 ENSRNOG00000015180 ENSRNOT00000020388 3 1 1 80 1 196849213 196849233 CACAAATACATTCTGAGCGAG 58 196849657 196851920 CTTCAACTCTGGGATCTGG 57 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000019724 3 1 2 89 9 84412636 84418024 ATTGATCTACACTGTTGCTGC 59 84418075 84418093 TTCTCAGCAGACACTGAGC 60 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 3 2 2 81 12 25500929 25500947 CCTGCATCCTATTTGGAGC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 Cd320 ENSRNOG00000006901 ENSRNOT00000009067 3 1 1 83 7 18703754 18704969 GGAAGAGTGTAGAATTGAGCC 59 18705014 18705032 CTGATGTTGTCACAGGAGC 59 NA Rattus norvegicus 81 LOC688286 ENSRNOG00000045615 ENSRNOT00000071406 1 1 1 80 10 106878364 106878886 CCAGAGATTTGCTAAAGGACTC 59 106878305 106878323 ACCATGTTGGTCTCCACAG 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000088892 3 4 7 80 1 102930431 102930449 TGTGACTGATATCGCTGCA 59 102930491 102931620 CCATATAAGCCCTTAACCAGC 59 NA Rattus norvegicus 81 Prap1 ENSRNOG00000018446 ENSRNOT00000024912 2 1 1 80 1 212561629 212561748 AAGCATTCAGATACCATGACCT 60 212561788 212561807 CAGTTCTGGACCCTGAAGAG 60 NA Rattus norvegicus 81 Rn60_9_0077.1 ENSRNOG00000046104 ENSRNOT00000072991 2 1 1 80 9 8661680 8661698 GTGGCTAAAGTCAGGAAGG 58 8661524 8661636 TGAAGCCTTAAACCTCTCG 57 NA Rattus norvegicus 81 Mis12 ENSRNOG00000007725 ENSRNOT00000010144 1 1 1 60 10 57660097 57660115 CAGTTCTTTGGCTTCACCC 59 57660134 57660157 GGTCTTGAAATGCTATGTAGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 3 2 2 86 3 11773728 11782759 ACTATGTGAAGTTCTCCAAGGA 59 11782806 11782824 TGAGCTTCAGCTCTTCCTC 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000065632,ENSRNOT00000077962 2 3 3 80 1 260587669 260629740 CATTTCTGAAGATTCTGGCTG 57 260587609 260587630 GTATGCTTTGAGAAAGGAAGAG 57 NA Rattus norvegicus 81 Dnase1l2 ENSRNOG00000042352 ENSRNOT00000012203 1 1 1 80 10 13813842 13813947 GGAGCAAATTAACAGCGTG 58 13813780 13813801 ATTTCCTTATACTGGTCACGTC 58 NA Rattus norvegicus 81 Mtrf1l ENSRNOG00000018773 ENSRNOT00000025398 3 1 1 80 1 42476686 42476705 AAGGTTATACAGCATGCGTC 59 42476023 42476645 CTTCCTTTAGTTCCAACCTGG 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076907,ENSRNOT00000003851 3 2 3 97 13 78956170 78957114 AAAGTGTCAAAGCCAGTACG 59 78934645 78934663 CGGTCGAATGTTGGTACAC 59 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 3 2 2 80 10 14310670 14310690 AGACCAGTGACATATTTGGGT 59 14307363 14310628 GCAAGACATGATCCTTGGG 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584,ENSRNOT00000000674 3 2 3 94 20 31268780 31268800 GATGTTCCAATTTACGCAGAC 58 31275566 31276865 GGGTCCTTTGTAGCAATCTC 58 NA Rattus norvegicus 81 Pmp2 ENSRNOG00000022707 ENSRNOT00000032059 3 1 1 90 2 93829079 93829097 TGAAGCAAGTGCAGAAGTG 59 93829146 93830482 CCCTTCATTATACATTCCACTACC 59 NA Rattus norvegicus 81 AABR07059786.1 ENSRNOG00000008962 ENSRNOT00000011848 2 1 1 60 4 35890093 35890112 AGGATCACATGAGGAAACGA 59 35890052 35890070 GCTTTGCCAGCATCTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 3 2 2 101 4 178069484 178075007 AGATACTGGGATCTCGTTGG 59 178069402 178069420 CTGGGTACTTCTCCAGGTG 59 NA Rattus norvegicus 81 Olr1499 ENSRNOG00000061111 ENSRNOT00000083428 1 1 1 60 10 60572346 60572367 GGTCTCTACTTATGTCCATCAG 58 60572307 60572326 TCATAGCCATGACAATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timp2 ENSRNOG00000003148 ENSRNOT00000004290 2 1 1 95 10 107341489 107348945 TATCTAATTGCAGGGAAGGC 58 107341413 107341431 CTTCTGGGTGATGCTAAGC 58 NA Rattus norvegicus 81 AABR07041771.1 ENSRNOG00000033679 ENSRNOT00000042507 2 1 1 60 X 139229248 139229269 GGAAGATGTCATTATGCCTGAG 59 139229209 139229227 GTGGTTACCTGCATGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifnlr1 ENSRNOG00000033984 ENSRNOT00000049459 1 1 1 103 5 154051464 154051482 ATGTCAACGCTACCTACCA 58 154051549 154054467 AAACAGGGTCTTGCTTCTC 58 NA Rattus norvegicus 81 Pf4 ENSRNOG00000028015 ENSRNOT00000033406 3 1 1 84 14 18848825 18848844 ATCCATCTCAAACGCATCAC 59 18848623 18848778 TCTTCAGCGTGGCTATGAG 60 NA Rattus norvegicus 81 LOC499339 ENSRNOG00000012574 ENSRNOT00000033724 1 1 1 80 1 245480423 245480442 GCGTTGGTATGAAGAACCTC 59 245476645 245480381 CACAACTCTGAAGAAGGCTG 59 NA Rattus norvegicus 81 Mir199a2 ENSRNOG00000029459 ENSRNOT00000044190 3 1 1 60 13 80125629 80125647 TTTCCAAGGAGAGGACAGC 59 80125666 80125689 GAAGAGAAACACTGGATATGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 2 1 1 65 3 11088921 11101625 CATGTCTAGCTGGGAGCTC 60 11088874 11088892 CCGTCAGAGTCACTGATGG 60 NA DesignNoJunction Rattus norvegicus 81 Id1 ENSRNOG00000021750 ENSRNOT00000029660 1 1 1 165 3 148215955 148215973 ACTCTGAGTCTGAAGTCGC 59 148216323 148216341 TCCATCTGGTTCCTCAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irak2 ENSRNOG00000021817 ENSRNOT00000029819 3 1 1 80 4 145639851 145639869 TATTGGCCGAGGTTCTCAC 60 145639910 145643470 CACTGAGAAGCAAATCCTTCAG 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365,ENSRNOT00000080567 3 2 2 80 12 12646599 12646618 AATGGAAGAAAGCCTGAGTG 58 12646659 12649878 TCTTGTTCTAGTCCACTCCAG 59 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767,ENSRNOT00000013331 3 2 2 80 15 23580275 23580293 CCTTCTGCTATATGCTGGC 58 23576516 23580234 GCTCATCAAATGCTATGATGTG 58 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 3 2 2 85 3 3791477 3792895 CAAATACCAGTCCTCCAGGA 59 3792943 3792961 AATCCTCATCAGGCATGGT 59 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000017663 2 1 2 112 15 2739344 2741973 CTAAAGAGGATGGACTCGCT 59 2742048 2742066 AGCAATCGCTGTAGTGAGG 60 NA Rattus norvegicus 81 Batf3 ENSRNOG00000003716 ENSRNOT00000004962 3 1 1 101 13 109715829 109715848 CAGGAAGGTTCGAAGAAGAG 58 109715912 109724651 AGACTCTCATGTTCCTCGT 58 NA Rattus norvegicus 81 Bora ENSRNOG00000024798 ENSRNOT00000039344 3 1 1 80 15 83457571 83457589 ATCGGCTATCTGTTCACCT 58 83457631 83460105 GTAAACTTCCTGTGCTCTGAC 59 NA Rattus norvegicus 81 Pigw ENSRNOG00000027857 ENSRNOT00000029769 2 1 1 60 10 72195526 72195544 AAATGCTAACCGAGAGGGA 58 72195484 72195502 ACCAGCCATGTATATTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adnp2 ENSRNOG00000053370 ENSRNOT00000078496 2 1 1 80 18 76647866 76652549 TGCTGAAGGATCTTAAAGGCT 60 76647806 76647827 GTTCCCAAAGAGAAACATCTCC 59 NA Rattus norvegicus 81 Nudt1 ENSRNOG00000001260 ENSRNOT00000001700 1 1 1 84 12 16394209 16394871 GCTAAGAGGGAGCTTCTGG 60 16394143 16394162 AGCCCACAAACTCAAATGAG 59 NA Rattus norvegicus 81 Acsm4 ENSRNOG00000014726 ENSRNOT00000034610 3 1 1 80 1 189453176 189453288 ATTATATCCTCCGGGTACCGA 60 189453329 189453348 AGCTGACTCAACTACTGCTG 60 NA Rattus norvegicus 81 RGD1562066 ENSRNOG00000050977 ENSRNOT00000074623 1 1 1 60 4 71079748 71079769 ACTTCACTTTCGTTGTCATTGG 60 71079709 71079728 TGCTTGGGTTTCACATAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884,ENSRNOT00000079543 2 2 2 80 10 14526741 14526759 TGGCTGACAGAAGTCTCAG 59 14526801 14526943 GGAGACACTTTCTATCTGCTG 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884,ENSRNOT00000079543 3 2 2 80 10 14526743 14526761 GCTGACAGAAGTCTCAGCT 59 14526802 14526945 TTGGAGACACTTTCTATCTGCT 59 NA Rattus norvegicus 81 Wnt3a ENSRNOG00000003039 ENSRNOT00000064505 1 1 1 123 10 45627826 45637953 TTCTTCTCTGGTCCTTGGC 59 45627721 45627739 ATCTCCACGTAGTTCCTGC 59 NA Rattus norvegicus 81 Olr691 ENSRNOG00000048259 ENSRNOT00000047425 2 1 1 60 3 78087143 78087162 AGACCTCTGCTATACCTCCA 59 78087180 78087203 CCTTTCTATGATGAGATCACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr93 ENSRNOG00000026514 ENSRNOT00000034042 2 1 1 80 1 141509650 141509671 ACATGGAGATCTTCTATGCCTC 60 141509712 141512019 GGAAGGTGGCCATACTGAG 60 NA Rattus norvegicus 81 Acy1 ENSRNOG00000011189 ENSRNOT00000015851 1 1 1 80 8 115137767 115138051 TGTCAGCATCCAGTACCTG 59 115137705 115137725 AATGTCATGTGGATGGTTCTG 59 NA Rattus norvegicus 81 Mvb12b ENSRNOG00000017172 ENSRNOT00000023172 2 1 1 81 3 12892811 12892829 AACTCATCGACGTCAAGGA 59 12886601 12892766 CTGAAGACCACCTCCTGTG 60 NA Rattus norvegicus 81 Klri2 ENSRNOG00000057643 ENSRNOT00000078642 1 1 1 81 4 163570608 163570628 ACAGGAACTGAAAGTTCACAC 59 163569495 163570565 CAACCAGGGATCTGTTCCT 59 NA Rattus norvegicus 81 Lsm4 ENSRNOG00000019572 ENSRNOT00000026567 3 1 1 120 16 20508437 20511634 GGAAGATGCTTCCCTTGTC 58 20507340 20507360 TTGATGTTCATCCAGTTGTCG 59 NA InUTR Rattus norvegicus 81 Cxxc1 ENSRNOG00000014614 ENSRNOT00000020472 3 1 1 80 18 70196605 70196747 GCTATGCTAAGTATGAGAGCCA 60 70196916 70196934 CACAGAAGAGTCGGGTAGC 60 NA Rattus norvegicus 81 Mcm10 ENSRNOG00000017981 ENSRNOT00000024178 2 1 1 80 17 77227381 77227399 CGCAAGTTGAAGACAGCAG 60 77227440 77228494 TCAATTCATCTTGCAACTCCTG 59 NA Rattus norvegicus 81 Scrn2 ENSRNOG00000010214 ENSRNOT00000013580 1 1 1 86 10 84970226 84970244 AGTATGGTGTCAGTCCTGC 59 84970294 84970394 GAATACCGACCTGGATGGG 60 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000078153 1 1 3 104 1 100599242 100601337 AACCAACAGGGCAGTAGAC 60 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027063,ENSRNOT00000078153,ENSRNOT00000027062 3 3 3 107 1 100599236 100599255 GATTGAAACCAACAGGGCAG 60 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr859 ENSRNOG00000047595 ENSRNOT00000073361 1 1 1 60 5 137574856 137574875 TCATTGTCACCTTGATCCAC 58 137574897 137574916 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 2 2 2 80 1 78077488 78078072 TCTAATCGTACAGGGCAGG 59 78078115 78078134 CACATGTGGTTGAGTCTCTG 59 NA Rattus norvegicus 81 Parm1 ENSRNOG00000002579 ENSRNOT00000003472 2 1 1 80 14 17973085 17982946 TATCTGAAGATCAGGCATTCC 57 17973025 17973043 AGGGTTGTTGTAGTTTCCC 57 NA Rattus norvegicus 81 Parm1 ENSRNOG00000002579 ENSRNOT00000003472 3 1 1 80 14 17973084 17982945 ATCTGAAGATCAGGCATTCCT 59 17973024 17973043 GAGGGTTGTTGTAGTTTCCC 59 NA Rattus norvegicus 81 Tas2r135 ENSRNOG00000026811 ENSRNOT00000031921 2 1 1 60 4 71796050 71796068 AGCTTCCCATACAACCCTG 59 71796092 71796110 CAGCAGTCAAGAAGTCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r135 ENSRNOG00000026811 ENSRNOT00000031921 3 1 1 60 4 71796224 71796242 ATGTTGCTTAGTGCTGTGG 59 71796264 71796284 GATTGCCTATGAAACACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1593 ENSRNOG00000003521 ENSRNOT00000004674 1 1 1 60 13 92225284 92225304 ATTCGCTTGGAAATTCAGAGG 59 92225324 92225344 GCAATGTATCTGTCAATAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd2 ENSRNOG00000001719 ENSRNOT00000002358 1 1 1 80 11 83943741 83943759 CTCAAATTTCTGCGTCCAC 57 83942648 83943698 AGCAAAGCACTTATTCTCCC 58 NA Rattus norvegicus 81 AABR07006055.1 ENSRNOG00000024991 ENSRNOT00000034299 3 1 1 142 1 215363387 215372742 TGTCACTGTGGAGGATGTG 59 215363185 215363257 CTGGACTGACAGCAAACAG 59 NA Rattus norvegicus 81 Usp26 ENSRNOG00000029106 ENSRNOT00000047605 3 1 1 99 X 139068904 139068924 ATAAAGGTTGTTCTCCCTTGG 58 139034220 139068846 GTTTGTTTCCTAAGTTCACCAG 58 NA InUTR Rattus norvegicus 81 Ivd ENSRNOG00000009421 ENSRNOT00000013829 3 1 1 80 3 110681897 110682108 GAGAAGAAAGGAGATCACTACG 58 110682149 110682167 GACAACTAGGACATCAGCG 58 NA Rattus norvegicus 81 Lgmn ENSRNOG00000007089 ENSRNOT00000010101 3 1 1 80 6 126288964 126288982 CTATGACGAGGAGAGGAGC 59 126288809 126288920 GTCAGATCCTCCACATCGG 60 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 1 2 2 80 X 110692807 110692828 GCTATCCATTAAGAATCCAGCC 59 110692867 110700395 GAAGATTCAGGCAGATTTCCA 58 NA Rattus norvegicus 81 Glb1l2 ENSRNOG00000007561 ENSRNOT00000037790 1 1 1 80 8 27811466 27811485 GTCTATGAGCCAGTGACTCC 60 27810844 27811426 CTCAGATGTGATTGGCTTATCC 59 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682,ENSRNOT00000086542 2 2 2 80 14 19391686 19391705 AAGCCCAATCAGAAAGAACC 59 19391747 19394369 ACAACAACTCCACTACCTCC 59 NA Rattus norvegicus 81 Rccd1 ENSRNOG00000042059 ENSRNOT00000029471 3 1 1 88 1 142110859 142110877 CAGCTCTCCTGGATCTTCC 59 142109851 142110807 TTCTCCTGTTCGTGTCACC 60 NA Rattus norvegicus 81 Olr418 ENSRNOG00000029787 ENSRNOT00000043676 3 1 1 60 3 20982477 20982496 TCTTCATCCTCTTCCTCACC 59 20982436 20982455 AGAATGATGAGCAGGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35a ENSRNOG00000049536 ENSRNOT00000050438 1 1 1 110 12 7186699 7186787 AATTGAAGGTGTTTATGCCCG 60 7186609 7186627 TTGTTTGGTTTGCCTCCAG 59 NA Rattus norvegicus 81 Fam160a2 ENSRNOG00000017408 ENSRNOT00000023502 3 1 1 80 1 170223070 170223277 TGGTTCTCAGGTATCTTGTCC 59 170223010 170223031 GTCCATAAAGATCCACATCACG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000089788,ENSRNOT00000078538 2 4 6 60 20 3306413 3306433 GCTGTTTCTTGTGCATTTGTC 59 3306455 3306473 AGGGTTCTTGGGAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pqlc1 ENSRNOG00000059215 ENSRNOT00000089389 3 1 1 82 18 76770336 76776398 GATACTCTTCTGGTTTGGCA 58 76776442 76776461 GCATCAGTAGCATCGTAAGG 59 NA Rattus norvegicus 81 Stard5 ENSRNOG00000025052 ENSRNOT00000015320 2 1 1 80 1 145775000 145775974 CATCAGTTCCAATGCTACCC 59 145776013 145776035 CATGGATGGTTAAATCCTCTCAC 59 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 2 2 2 80 11 71994467 71994488 ATGTCTTGAAGTTCTACGACTC 58 71994527 71995447 AAGGAAAGCCATCTTTCTCAG 58 NA Rattus norvegicus 81 Ptp4a2 ENSRNOG00000050044 ENSRNOT00000074415 3 1 1 80 5 148051620 148054469 CAAGTTCACCGAGGAACTC 58 148054512 148054531 ACTGGAGCTTTGTCATAGGT 59 NA Rattus norvegicus 81 Vezf1 ENSRNOG00000009819 ENSRNOT00000055705 1 1 1 82 10 75371874 75373510 TTCAAATGCCAAACGTGCA 60 75373556 75373574 GATACCTTGCCTTCATGGC 59 NA Rattus norvegicus 81 Sumo1 ENSRNOG00000016133 ENSRNOT00000022047 3 1 1 80 9 66460518 66470223 TATTGGACAGGACAGCAGTG 60 66460457 66460478 TGACAGTACGATTCTTTGAGCT 60 NA Rattus norvegicus 81 Cd300lb ENSRNOG00000036728 ENSRNOT00000035639 3 1 1 80 10 103472302 103472320 TCTAAGCAACTTTCCTGGC 58 103471264 103472260 CATGTAATGGGTCCTCTTCTG 58 NA Rattus norvegicus 81 Clstn1 ENSRNOG00000016398 ENSRNOT00000045063 1 1 1 80 5 166596506 166596524 TTACCTCAACTCAAGGCAG 57 166596567 166596835 GCCTCATTAAAGCACTTGAC 58 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000058563 ENSRNOT00000080489 3 1 1 80 12 13391091 13392490 GACTATCAGAACCAAGGGTG 58 13392533 13392551 AATCCGATGACAAGTCCCT 58 NA Rattus norvegicus 81 Sirt6 ENSRNOG00000006393 ENSRNOT00000008758 3 1 1 81 7 10937656 10937674 TGTCGGTGAATTATGCAGC 59 10937718 10938614 TCTGGTGGGTCGAATATCTC 59 NA Rattus norvegicus 81 Nt5dc1 ENSRNOG00000000546 ENSRNOT00000000657 1 1 1 80 20 41127130 41127149 TACAAACGCATTAAAGCCAG 57 41119960 41127089 TTCTCCTCATCATTCTCAAGC 58 NA Rattus norvegicus 81 Abo ENSRNOG00000046958 ENSRNOT00000044775 3 1 1 84 3 4377500 4378003 GTACTGACACCCACTAGGAC 59 4377435 4377453 TGTCAATGTCGAAGGTCCC 60 NA Rattus norvegicus 81 Tekt4 ENSRNOG00000018792 ENSRNOT00000025434 2 1 1 80 10 14831984 14832002 AACCTGGCTTTCTCAAACC 58 14832045 14832682 ACTCAGGATCTTTAGCAGGT 58 NA Rattus norvegicus 81 Ces2g ENSRNOG00000013808 ENSRNOT00000048385 2 1 1 80 19 37031151 37031573 GGCATGAAACTTAACCTCAC 57 37031615 37031634 ATATCTTGCAAAGTTTGCCC 57 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960,ENSRNOT00000078947 1 2 2 80 7 124162791 124171670 GGAAGAGTCATTTGTTTCATCG 58 124162732 124162752 AGGTTCAGTCTTTCATCTTGC 59 NA Rattus norvegicus 81 Gzmbl1 ENSRNOG00000050198 ENSRNOT00000071692 2 1 1 82 X 123016501 123016649 CTATTAAAGCTGAAGAGTAAGGCC 59 123016442 123016461 GGCTTCACTTTGAAGTTGCT 59 NA Rattus norvegicus 81 Il17c ENSRNOG00000013007 ENSRNOT00000017358 2 1 1 95 19 55246944 55247180 ACTGTGATGTGTCTCCTGC 60 55247239 55247257 TGTCGTCTTATGGCTTCGG 60 NA Rattus norvegicus 81 Taf5 ENSRNOG00000020274 ENSRNOT00000027482 1 1 1 80 1 266858757 266858775 AAAGGCCACACTGATACAG 58 266858818 266858943 TGTGTTATCCATCGAACCTG 58 NA Rattus norvegicus 81 Exoc3l2 ENSRNOG00000017448 ENSRNOT00000023451 1 1 1 96 1 80396652 80396670 TAGCAGTTCGGAAGCTCTG 60 80396730 80397150 CACCAGAACCTGGTATGGT 59 NA Rattus norvegicus 81 Olr681 ENSRNOG00000058748 ENSRNOT00000080527 3 1 1 60 3 77927561 77927581 CTATGGTGTCATCCTCTTCTC 57 77927521 77927539 GAGAGCTTTCCTTCGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh1a1 ENSRNOG00000017619 ENSRNOT00000024000 2 1 1 80 1 238238472 238240444 GCTGCTGGCTACAATAGAG 58 238240486 238240506 TTTATGCTGCCTCCTAAATCC 58 NA Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 2 2 2 80 8 13863842 13864916 CATATGAGCAAGCAGTTGCA 59 13864957 13864977 TCAAGCATTCCTTAAGGTGGT 60 NA Rattus norvegicus 81 LOC691909 ENSRNOG00000053015 ENSRNOT00000078779 3 1 1 81 1 199033817 199033836 GCAGACTATGTGGTCAACAC 59 199033662 199033773 ATAGGTCGAGACGAACCTG 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053,ENSRNOT00000004753 3 2 2 80 10 46574219 46574237 TGTGAACATCTCCTGGAGC 59 46573909 46574175 TGAGAACTCCCTGTCTCCA 60 NA Rattus norvegicus 81 Hsf2 ENSRNOG00000000808 ENSRNOT00000001059 3 1 1 80 20 38955353 38955372 TGCAGTTTAGAGGACTTCCA 59 38955412 38961693 ATTCTCAGAATCAACCAGAAGG 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003,ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000025291,ENSRNOT00000045163,ENSRNOT00000063853,ENSRNOT00000025045 3 10 10 89 9 95299510 95299528 GCTACACCGGAACTAGACC 60 95299581 95299864 CCTTTGGATGACCAAGCAG 59 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 1 2 2 84 6 126682423 126683876 TGACTACCTACAGGCAAGC 59 126682357 126682380 GTCTGCTATTCTCTTCATCAACTG 60 NA Rattus norvegicus 81 Nfe2l2 ENSRNOG00000001548 ENSRNOT00000002114 3 1 1 80 3 62499630 62499651 ACTGATTTAAGCAGCATACAGC 60 62499230 62499592 ATTAAGACACTGTAACTCGGGA 59 NA Rattus norvegicus 81 LOC100912228 ENSRNOG00000046449 ENSRNOT00000074351 2 1 1 85 4 79579183 79579201 CAAGAGATCCAGCCCTGAG 60 79579249 79581021 GGTCTTCAAGCCTTGTTCTG 59 NA Rattus norvegicus 81 LOC103690255 ENSRNOG00000053006 ENSRNOT00000078723 3 1 1 60 4 72292796 72292814 AGATGCTGGCTGTACTGAG 59 72292837 72292856 GCTACCATGACCTTGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53inp2 ENSRNOG00000018225 ENSRNOT00000055310 1 1 1 87 3 150913945 150913963 TGAAGACTCCAACTGTCCG 59 150914012 150914462 TGTATAGCTGTCCTGTAGGTC 59 NA Rattus norvegicus 81 Gpr17 ENSRNOG00000025745 ENSRNOT00000036537 1 1 1 60 18 24734651 24734671 AAGCACCTCAAGAATAAAGCC 59 24734611 24734629 AAATCAGGAAGATGGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomp ENSRNOG00000048470 ENSRNOT00000073155 3 1 1 94 12 8757632 8759424 GTTTCCAAGATGAACGCCAG 60 8757557 8757575 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 Polq ENSRNOG00000002471 ENSRNOT00000063995 1 1 1 80 11 66616999 66618636 GAAGCAAGTTAACTCACCACAG 60 66616940 66616958 ACTACCACAGCACAGTCAG 59 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000081678 2 1 2 80 2 184238547 184238567 GTGGTAACCGCATAGTTAGTG 59 184237104 184238505 ACGTCCTCAGACACTTACC 59 NA Rattus norvegicus 81 Uhrf2 ENSRNOG00000011308 ENSRNOT00000015406 2 1 1 80 1 248284777 248285887 GTCTGCGATTGCAGTATCC 59 248285931 248285949 TCGTCTGCTTCTTTGACTG 58 NA Rattus norvegicus 81 Gse1 ENSRNOG00000017489 ENSRNOT00000023607 3 1 1 80 19 54138908 54139349 TTCCAACCACTCAACCTCC 60 54139391 54139411 GAAGCTTCTCAGGTAGTCCTC 60 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991,ENSRNOT00000002705 2 2 5 80 14 22252219 22257634 AAACTCTAGGAAGACCCACC 59 22257675 22257695 CAATATCCCAATACGTTCGGA 58 NA Rattus norvegicus 81 Fbln2 ENSRNOG00000007338 ENSRNOT00000009696 2 1 1 80 4 122877513 122877531 CGAGGAGCCTCTCATAGTG 59 122877573 122879309 ATCTCCGTCTCTGAAACTCTG 59 NA Rattus norvegicus 81 Arfrp1 ENSRNOG00000013992 ENSRNOT00000019038 2 1 1 80 3 176861360 176863754 GTGGGACAAGTACTATGCAG 58 176861299 176861318 TTTGATTCTGACAGCCTCTC 58 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 3 2 2 83 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827603 8827621 CAGAACATTGTTGCCCAGG 59 NA Rattus norvegicus 81 Tmem40 ENSRNOG00000010430 ENSRNOT00000013889 3 1 1 81 4 147646785 147646905 CTACCACTACTATTCAGACTGGT 59 147646726 147646744 GTAGATGCCGATGGTCTCC 60 NA Rattus norvegicus 81 Uqcrb ENSRNOG00000024967 ENSRNOT00000037030 2 1 1 80 7 71265888 71265906 CCCTAGACCTGTCTATGCG 59 71265243 71265848 GTTCAAGGTAGAATTTGTCCTCC 60 NA Rattus norvegicus 81 Fa2h ENSRNOG00000018950 ENSRNOT00000025625 3 1 1 80 19 43555734 43556303 CAAGACTGTCTGGTATAGTGTC 58 43555675 43555693 GTGAGGGTTCGGTAGTAGG 59 NA Rattus norvegicus 81 Lama4 ENSRNOG00000000599 ENSRNOT00000000737 3 1 1 80 20 44169220 44170122 CTGCAAACTTCAAGCTCCC 60 44170163 44170184 CATCATTATTCAGAGTGGCCAG 59 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000058296 2 3 5 98 18 79424931 79426829 AGAACATTGTGACACCTCGT 60 79430398 79430416 TATAGTCGGAAGCTCTGCC 59 NA Rattus norvegicus 81 Vstm5 ENSRNOG00000010480 ENSRNOT00000013927 1 1 1 80 8 13814083 13814103 ACTATGTTATCACCGTCACAG 58 13814145 13814255 CATAGCGGATCTCAGACAC 58 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 1 2 2 80 18 35762651 35762669 AAGTGTGGACCAAGACCAG 60 35749348 35762607 CTGCAGTTGTCCATGTCAG 59 NA Rattus norvegicus 81 Pigt ENSRNOG00000014690 ENSRNOT00000019761 3 1 1 80 3 160948533 160948553 AAAGCAGATCGATTGTTCCAC 59 160948595 160949147 GGTGCAGTGAGCATTTCTG 60 NA Rattus norvegicus 81 Rn60_X_0685.1 ENSRNOG00000051038 ENSRNOT00000076502 2 1 1 119 X 67601141 67601274 AAAGTATGGAGGTTCTTTCGG 58 67601042 67601060 TTATCGTCTGGTCCTTCCA 58 NA Rattus norvegicus 81 Olr1519 ENSRNOG00000045565 ENSRNOT00000074715 2 1 1 60 10 61160878 61160896 TATGGGACGCTTGGTATGG 59 61160918 61160938 CTGAGTCTTTCATGGAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925,ENSRNOT00000033672 1 2 3 80 4 85289295 85289501 CATCCAGTACAGGAAGGCA 59 85289233 85289254 TTGACAAAGAAGAGCATGTAGG 59 NA Rattus norvegicus 81 Ift140 ENSRNOG00000016545 ENSRNOT00000022063 2 1 1 80 10 14450446 14450466 CCACCTACTACAACTATGCCA 59 14450504 14451175 TGTCTGACTTCTCATAGTAGCTG 60 NA Rattus norvegicus 81 Rn60_X_0694.1 ENSRNOG00000051279 ENSRNOT00000076465 3 1 1 60 X 68471075 68471094 TTTGACGACTGTTCAGACAC 59 68471117 68471135 GAAGTCAACTGCTCCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r35 ENSRNOG00000050881 ENSRNOT00000074735 1 1 1 99 12 21988367 21988385 GAGAAGTTGGCGATGTTGC 60 21988195 21988213 GAGAATCTGGGTTGCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Hspb6 ENSRNOG00000020922 ENSRNOT00000028401 3 1 1 80 1 89009124 89009143 AGGAAATCTCTGTCAAGGTG 57 89009185 89009288 TGAATCCATGTTCATCTGGG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000078589 3 3 5 81 1 15813302 15815283 GTTCATCACGTGAAAGAGCA 59 15815323 15815345 CAGTAGCTTTCTGGTATGAAGTG 59 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 2 2 2 80 10 16725145 16727753 GATTTCATGTATGAGCTGGATAGAG 59 16725089 16725110 TTTGCAGTCTTCCAAAGAAAGG 60 NA Rattus norvegicus 81 Sept12 ENSRNOG00000003137 ENSRNOT00000061208 1 1 1 80 10 10779148 10780823 CAATGACAAGTGCTGGGAC 59 10780867 10780885 GTGATGAGAAGCTCCTCCT 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716,ENSRNOT00000091693 2 2 2 80 6 124677487 124677508 CAACTTAACAGGACATGCAGAG 60 124652094 124677447 TTCCCATAAGCTCCAGTTCC 60 NA Rattus norvegicus 81 Irs3 ENSRNOG00000001389 ENSRNOT00000001874 2 1 1 110 12 22123499 22123517 AGCAGCAAACATGGTACAG 59 22123761 22123779 CGAAGATCCAAGACTCAGG 57 NA DesignNoJunction Rattus norvegicus 81 Ttll1 ENSRNOG00000010141 ENSRNOT00000055978 3 1 1 80 7 124345165 124345185 GAGATTCCAGACTGCAAATGG 59 124338895 124345123 CAGCTCCTCGTCATACAGG 60 NA Rattus norvegicus 81 Enthd2 ENSRNOG00000028161 ENSRNOT00000038993 1 1 1 80 10 109274415 109274664 GACCAGAGCTGTGAAACAC 59 109274353 109274373 GAATTCTGGGAACTAGGACTG 58 NA Rattus norvegicus 81 Sccpdh ENSRNOG00000046051 ENSRNOT00000057787 2 1 1 80 13 97713920 97713939 TTGGGATCTGATATGTCGGT 58 97713982 97714802 GGCATACTGAACTGGTGAG 58 NA Rattus norvegicus 81 Rd3 ENSRNOG00000050766 ENSRNOT00000075086 2 1 1 104 13 110745861 110747524 CATCCTCAGGTTCCGACAG 60 110747592 110747610 TGCTTCATCTTCTCCAGGG 59 NA Rattus norvegicus 81 Terc ENSRNOG00000051777 ENSRNOT00000084300 2 1 1 60 2 116432691 116432709 GTATTTAGGGACAAGGGCC 58 116432730 116432751 AACCCACAGCTATAACAATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb5 ENSRNOG00000039457 ENSRNOT00000060468 2 1 1 60 18 30881466 30881486 GTCTCCTACTCCATCATAGCC 59 30881508 30881526 CGGTCACATAGGACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gars ENSRNOG00000011052 ENSRNOT00000014780 3 1 1 80 4 85273745 85274347 AAGGAATTATCGGAAGCTCTG 58 85274389 85274407 ATAGCGCCTTCCAATAGAC 57 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000063786 2 1 2 87 6 126636286 126636304 TTGGTAGCGGAGTTCTTCG 60 126632610 126636236 CTTCATCACCATCCAAAGCG 60 NA Rattus norvegicus 81 Prol1 ENSRNOG00000023578 ENSRNOT00000032459 3 1 1 61 14 21352464 21352483 GGAAACTTTCATCTTGGGCC 60 21339461 21352440 GATGACTTTCTCCAGGCGT 60 NA DesignRelaxed Rattus norvegicus 81 Olr1457 ENSRNOG00000050914 ENSRNOT00000042919 1 1 1 60 10 44749736 44749754 TACTTGCTCCTCTCACCTG 58 44749694 44749714 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdia4 ENSRNOG00000006228 ENSRNOT00000008728 2 1 1 80 4 77481997 77483349 ACCCAGGAAGAAATTGTTGC 59 77481936 77481958 CAATGTAAGAGTGACTTCAGGTG 60 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000085323 1 1 5 107 9 81674754 81674772 CAGTCCAGTACCTGCTTCC 60 81674843 81674994 TGTTCACTGGCTTGAAGGA 59 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062 2 1 5 60 9 81675983 81676002 CCTCATACGTCTTCCATCCA 59 81676467 81676486 CTCATGTTGTCAAACCACGA 59 NA DesignNoJunction Rattus norvegicus 81 Pmf1 ENSRNOG00000019620 ENSRNOT00000035383 3 1 1 80 2 187771736 187771754 ATCTCCAGGGTGAAACTCC 59 187757648 187771693 GAACCTCTCATAGCTCTTGC 58 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 1 3 3 80 12 39693748 39693770 GCTATGACTATCTCAAGACTCTG 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 1 2 2 80 1 199288237 199288334 GAGTTCTTCCAGAAGGTGC 58 199288378 199288396 CTGCTGTTTCTCCAACTCC 59 NA Rattus norvegicus 81 Olr720 ENSRNOG00000006637 ENSRNOT00000008676 2 1 1 60 3 78716706 78716725 TTAATCAGGAAGGGAGGTGG 59 78716665 78716684 ACAACTACAGTGATGTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561777 ENSRNOG00000024543 ENSRNOT00000035047 1 1 1 81 20 44998646 44999721 GGATACAGGTGGGAACGTC 60 44998583 44998601 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Olr697 ENSRNOG00000029675 ENSRNOT00000046271 1 1 1 60 3 78215579 78215599 TCTTTGTTCCATGCATCTTCC 59 78215539 78215560 GACTTATCAATGGGAAATGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arrdc5 ENSRNOG00000047223 ENSRNOT00000073054 2 1 1 80 9 10762780 10762798 AAGAAGAGGCTGTACCTGC 59 10762840 10765662 TTCTACAGACAGTGGGTTCTC 59 NA Rattus norvegicus 81 Pcdhga5 ENSRNOG00000027299 ENSRNOT00000027026 3 1 1 60 18 30842194 30842213 GCCGACATAAATGACAACCC 60 30842233 30842254 CTGAGATGGAAGTGGAATAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036698.1 ENSRNOG00000046702 ENSRNOT00000075665 1 1 1 80 X 586450 586468 CAAAGCTGACCAAATGGCA 59 586511 587155 CCATGACACCTAGGTCTGTC 60 NA Rattus norvegicus 81 Tm4sf20 ENSRNOG00000015460 ENSRNOT00000020880 2 1 1 80 9 88524545 88524566 CCTCTAGTTTGTAACACTCAGG 58 88522267 88524507 TTCAGGACGAAAGTTACTTAGG 58 NA Rattus norvegicus 81 Igfbp6 ENSRNOG00000010977 ENSRNOT00000014807 1 1 1 82 7 143749627 143749645 AACGAAGAGACACCTTTGC 58 143749691 143752114 TTGGTAGTCTCTTCCGACG 59 NA Rattus norvegicus 81 Natd1 ENSRNOG00000050567 ENSRNOT00000075751 1 1 1 92 10 47158440 47164507 CCTCAACGGATGTCATGAC 58 47158366 47158384 TAAGCATCTGGGACCTCTG 59 NA Rattus norvegicus 81 Ccnj ENSRNOG00000014551 ENSRNOT00000019521 2 1 1 80 1 260107091 260107193 TGTCTCTGCAAGATTATGCC 58 260107235 260107254 GGATAATCCTCGAAGAAGCC 58 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 3 2 2 80 3 54548464 54548483 TCGCAACAATCCTTAAGGAG 58 54547288 54548423 CAGCTTTCAAATCCCTATGGA 58 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000086146 3 1 4 80 9 81579494 81579690 ATACCAAAGACTCAGGACTCTC 59 81579435 81579454 CAGCAGGGTAAATGACACTC 59 NA Rattus norvegicus 81 Gigyf1 ENSRNOG00000001410 ENSRNOT00000001912 3 1 1 80 12 22242054 22242210 AGGGATGGAGTACGATCTG 58 22241992 22242011 CCAATTCTCACTGTCTGAGC 59 NA Rattus norvegicus 81 Prss38 ENSRNOG00000022548 ENSRNOT00000050370 2 1 1 81 10 45725381 45726059 TTTGCCAGGGAGAAGAGAC 59 45725318 45725336 ACTGGGTATGTTTGTTGGC 58 NA Rattus norvegicus 81 Rnf213 ENSRNOG00000029658 ENSRNOT00000044983 3 1 1 80 10 108582548 108584548 CTGTCTTCACAGAGATCACCA 60 108584590 108584608 GTCCTCTCAGCTCAGACTC 59 NA Rattus norvegicus 81 Oc90 ENSRNOG00000050531 ENSRNOT00000044610 2 1 1 80 7 106447460 106447478 CTCAGTCTGGCATCAACTC 58 106447260 106447416 TCCCACTAGTTGTCTCTGG 58 NA Rattus norvegicus 81 Plekhg4 ENSRNOG00000016479 ENSRNOT00000022439 2 1 1 80 19 37337454 37337473 GGCTCTAGTGGTTCTGACAG 60 37337514 37344622 TGTTGTTTCACAGGACAAGTC 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 1 2 2 80 3 113936774 113936794 ATAGGAAACCTGCTCTTCCTC 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Ccdc61 ENSRNOG00000013767 ENSRNOT00000018495 1 1 1 80 1 79809950 79809968 TTGACTCATAAGACCGGGA 58 79807447 79809906 CTCACTACTCTGGGTGAGG 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 3 1 2 61 8 11997802 12160125 TAGTTAACCTTGGTCCCGC 59 12160150 12160168 AAGAAATGAGCTGTCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Cped1 ENSRNOG00000021840 ENSRNOT00000038566 1 1 1 80 4 49202284 49202303 ACTGCTTTCAGCTTATGACC 58 49202346 49203579 TTAAACGCTCGTGTACCTG 58 NA Rattus norvegicus 81 Cped1 ENSRNOG00000021840 ENSRNOT00000038566 2 1 1 80 4 49202285 49202304 CTGCTTTCAGCTTATGACCT 58 49202346 49203580 TTTAAACGCTCGTGTACCTG 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000085560 3 1 3 63 1 37957287 37957308 GGAGAATTATAGCAACCTTGTG 57 37918593 37918611 AAGGCAGGATGAAGATGGA 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363112 ENSRNOG00000033429 ENSRNOT00000046977 3 1 1 82 3 119354954 119354972 GAACTCAATCTGCTCACCG 59 119355015 119376028 GTGAAGTTCCATTTCCTACACC 59 NA Rattus norvegicus 81 Vom1r58 ENSRNOG00000049668 ENSRNOT00000048444 2 1 1 60 1 75131352 75131371 ACATCATGCTTCCAAGTGAC 59 75131390 75131412 CCAAGACAGAACTGGAATATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fah ENSRNOG00000013223 ENSRNOT00000068167 3 1 1 80 1 146731822 146732765 CATGTCTTCGATGAGACAACTC 59 146731763 146731781 CTGTAAGGATGCTCTTGCC 58 NA Rattus norvegicus 81 Casp1 ENSRNOG00000007372 ENSRNOT00000009993 2 1 1 80 8 2610729 2610750 AAGATGATGGCATTAAGAAGGC 59 2610789 2613416 TCCAGGACACATTATCTGGTG 60 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900,ENSRNOT00000063902 1 2 4 82 13 80431158 80432587 GCTACTCTTAGAGACTCCACTG 60 80431097 80431120 GGAAATGATCATGAATGAAGAGGG 60 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000075969,ENSRNOT00000063902 2 2 4 86 13 80429849 80429867 TGGGAATGAGTTGTCCTCC 59 80428615 80429803 TAAAGATACCTTCACGAGACAGG 60 NA Rattus norvegicus 81 AABR07021846.1 ENSRNOG00000057677 ENSRNOT00000072611 1 1 1 60 13 95416307 95416325 GGGAAGTGGAAAGTACGTG 58 95416349 95416367 TTTGCCTTGTCTGATCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bckdha ENSRNOG00000020607 ENSRNOT00000027995 1 1 1 80 1 82423768 82424344 CGAAAGAAGGTGATGGAGG 58 82423706 82423724 GTACACATCGGAGAAGAGG 57 NA Rattus norvegicus 81 Olr560 ENSRNOG00000037837 ENSRNOT00000057483 1 1 1 60 3 75413086 75413104 AAACTGGCATCAACTGGAG 58 75413126 75413146 CTATCAGATGAGATGAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psors1c2 ENSRNOG00000048579 ENSRNOT00000074958 3 1 1 140 20 3728160 3728763 CTATTTGCAGGAGGCATCTC 59 3728039 3728058 CTCATCAAACAGAGGAGGTG 58 NA Rattus norvegicus 81 Mapkap1 ENSRNOG00000017583 ENSRNOT00000023889 2 1 1 80 3 13696777 13696797 AAGCAGTCACGACTATAAGCA 60 13696836 13700284 ATGTAGTTAACCTTGAGCACGA 60 NA Rattus norvegicus 81 Zfp449 ENSRNOG00000050562 ENSRNOT00000073827 1 1 1 80 X 73393004 73393027 CCAGACAATAGAGAAAGAGTTGTG 60 73393064 73397451 CATGTCAATCTGTGGTTCTGG 59 NA Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 3 1 1 75 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162419565 162423254 TACATTCAGCTCCACAACG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910838 ENSRNOG00000024641 ENSRNOT00000029041 1 1 1 87 12 22033370 22033388 ATCCACCATGATCGAGGAG 59 22033438 22034203 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Lrrn4cl ENSRNOG00000026302 ENSRNOT00000036454 2 1 1 124 1 225048298 225048894 CTACCCACTGGTCTTGTCC 59 225048982 225049000 TTGGGAAACCAAGGAGGTG 60 NA Rattus norvegicus 81 Trim8 ENSRNOG00000019968 ENSRNOT00000027047 3 1 1 80 1 266268756 266268907 ATCCTAATGGACAGGACCC 58 266268951 266268969 GAAGAGCTTGGAGTTCAGG 58 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 3 2 2 80 1 79950014 79950034 TCTGGACAAGTATGAAGACTG 57 79950073 79950510 GTAAAGATCCCATCTTTCTGGT 58 NA Rattus norvegicus 81 Slc7a6os ENSRNOG00000020049 ENSRNOT00000027200 2 1 1 81 19 38181547 38182646 TGAAGATTCCAGAGGCTCTG 59 38181485 38181504 GTATTTGCTCCACACCAGTC 59 NA Rattus norvegicus 81 Psen1 ENSRNOG00000009110 ENSRNOT00000012495 3 1 1 80 6 107181073 107181092 TTGTCCTACTTCCAGAATGC 58 107181133 107195583 CCGTTCTTGATTGTCATTCTG 58 NA Rattus norvegicus 81 Rpl31l4 ENSRNOG00000039249 ENSRNOT00000045401 2 1 1 60 12 19159542 19159560 ACTTACGTGCCTGTTACCA 59 19159500 19159522 GTTAGTTCTCATCCACATTGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 3 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152496 104154706 GTTCTTCTGATCATAAGCCGAG 59 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 1 2 2 80 10 61706682 61707878 CTCATCCAGATCTTGGACTC 57 61706621 61706642 GCGATAACAGAAATAGAAGTGG 57 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769,ENSRNOT00000074991 1 2 2 80 19 119041 119703 ACTTCTATCGCAACCTGCA 59 118979 119000 CAAGCTTAAACTCCTTGCTCTC 60 NA Rattus norvegicus 81 Olr1250 ENSRNOG00000046504 ENSRNOT00000073845 3 1 1 60 4 1658805 1658826 CTATTTCTGTGATCTCCTCCCT 59 1658846 1658865 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2a ENSRNOG00000011330 ENSRNOT00000015451 2 1 1 80 19 62704 62724 TCTGAAGACTGCCTGTATCTC 59 61877 62663 GATCCATACCATCACAGGCA 60 NA Rattus norvegicus 81 Ece2 ENSRNOG00000001715 ENSRNOT00000044482 3 1 1 80 11 83951163 83951183 CCAAGAATGAAATCGTCTTCC 57 83950998 83951121 CGAAGTTCAAAGCCTTTGG 58 NA Rattus norvegicus 81 Elk1 ENSRNOG00000010171 ENSRNOT00000013522 2 1 1 107 X 1301768 1302315 CCCTGCAGGTTATCTTAACC 58 1302385 1302403 CCTCCACTTTGACTTCTGG 58 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 2 2 2 81 7 53642211 53645187 CTTTCTGTGCATGGTTTGC 58 53645230 53645250 GCATGATTTGCAGTAGATCTC 57 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000064760 1 1 2 201 10 87564102 87564120 TGCATTTCTAGCTGTTGCC 59 87563880 87563898 GACCACAGACTGGTCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbmxl2 ENSRNOG00000021946 ENSRNOT00000044538 1 1 1 80 1 171420635 171420654 TTCGTCACCTTCGAGAACC 60 171420698 171420716 TGATGGCTTACCATCCAGG 59 NA Rattus norvegicus 81 LOC102553715 ENSRNOG00000045683 ENSRNOT00000057880 2 1 1 105 10 49002531 49002550 TGTTGACTTCTCCATCTCCC 59 49002617 49003005 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Olr947 ENSRNOG00000046083 ENSRNOT00000010865 3 1 1 95 7 8452325 8452343 CTCCTGTGACTACTTCCCT 58 8452401 8452421 AACAACAGAGTGACAAATGC 57 NA Rattus norvegicus 81 Eif3f ENSRNOG00000015221 ENSRNOT00000021017 3 1 1 80 1 173541122 173541579 AACAGCAACATCAACGACC 59 173541623 173541641 AAGTTTCTCGTTGAGGGCA 60 NA Rattus norvegicus 81 Pcdhb3 ENSRNOG00000020095 ENSRNOT00000027216 3 1 1 60 18 30382468 30382490 GAAATGCGTAGTCATAGTTCAGG 60 30382510 30382528 CAATGTCAGTTCTGGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setd6 ENSRNOG00000012447 ENSRNOT00000016626 2 1 1 80 19 9763449 9763469 CCCTAACAACACAGATGACAC 59 9763302 9763408 GTTTCATCCTCTGTTCCCTG 58 NA Rattus norvegicus 81 AABR07054979.1 ENSRNOG00000052044 ENSRNOT00000089867 1 1 1 80 3 176151967 176151988 CTGCCGAGCATATTGATGC 60 176152028 176152050 GTTGTAATACCGGTCATATCCTC 59 NA Rattus norvegicus 81 Lyplal1 ENSRNOG00000023130 ENSRNOT00000032865 2 1 1 80 13 104077314 104077334 AAGCAGGTACTAAACCAAGAC 58 104063259 104077272 AGGAGTATATGGCCTGGAG 58 NA Rattus norvegicus 81 Sirt7 ENSRNOG00000036683 ENSRNOT00000054951 3 1 1 85 10 109798197 109798358 GTCCAGCTTGAAGGTACTG 58 109798130 109798149 TCACAATGTAGAGTTTGGGC 58 NA Rattus norvegicus 81 Olfm2 ENSRNOG00000020519 ENSRNOT00000027829 3 1 1 81 8 21689471 21691256 CAGCTCATGGAGAAGGTCC 60 21689408 21689427 GAACATACTGGAGATCCCGG 60 NA Rattus norvegicus 81 Olr1590 ENSRNOG00000030059 ENSRNOT00000045217 3 1 1 119 13 92177745 92177763 AATGTTTGCTGTCCTTGCC 59 92177850 92177869 ATCAGTGACCAGAGACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017662.2 ENSRNOG00000047078 ENSRNOT00000066990 3 1 1 84 15 29856712 29856903 GATTTGCTGGGTGAGAGGA 59 29856646 29856665 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 LOC498308 ENSRNOG00000032812 ENSRNOT00000048200 1 1 1 80 13 108444477 108444499 AGTGTTGGGATTATAGACTCTCG 60 108444307 108444440 ATGGCTTACTTTCATGTGAGTG 59 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 2 2 2 81 7 125837262 125839292 GATGAAGTTGAAGAGATGGGA 58 125839335 125839353 TACGCTTTGCCTTCTTCAC 59 NA Rattus norvegicus 81 As3mt ENSRNOG00000020081 ENSRNOT00000027223 2 1 1 80 1 266487091 266489956 TACCAAGTCCTGAAGTACGG 59 266489997 266490017 TGACTTGATGTCTTCTGACAC 58 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 3 2 2 80 13 99273802 99273823 TCTTAGAGAAGTTCTCCACCTG 59 99272351 99273761 CCAGGGAGAACTTCCTCTC 59 NA Rattus norvegicus 81 Cptp ENSRNOG00000022455 ENSRNOT00000039117 3 1 1 81 5 173316053 173316072 AAGTGTCTCACTGACAAGGG 60 173315781 173316009 GGCTGTTCAGAAACCTGAC 59 NA Rattus norvegicus 81 Tigd3 ENSRNOG00000023318 ENSRNOT00000031678 3 1 1 100 1 221251218 221251236 CTGATTCTGTCAAGGCCCA 60 221250302 221250321 CTTCTTGGTGTTTAGCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_2_2281.4 ENSRNOG00000051107 ENSRNOT00000076959 1 1 1 60 2 208593283 208594249 CAAACTCAAGGAGAGGAACAG 59 208594270 208594289 AAAGTTCCACCCTCTGATGG 60 NA DesignRelaxed Rattus norvegicus 81 Amtn ENSRNOG00000003776 ENSRNOT00000065778 2 1 1 80 14 21294230 21295801 CTGCCATTGTTCAACCCTG 59 21294168 21294187 CTGTTGTCCATTCAGTGGTC 59 NA Rattus norvegicus 81 Chrm2 ENSRNOG00000046972 ENSRNOT00000075341 1 1 1 60 4 64090193 64090211 AAAGAAGCCTCCACCATCC 60 64090232 64090253 CAACAGGATAGCCAAGATTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000073636 3 1 8 64 3 100788253 100788271 AACAATGTGACTCCACTGC 58 100788299 100815572 CTCACCTGGTGGAACTCAG 60 NA DesignRelaxed Rattus norvegicus 81 Sdc1 ENSRNOG00000059947 ENSRNOT00000086633 3 1 1 80 6 33905142 33905161 CATCAAAGAGGTTGTGGAGG 59 33905201 33905681 TCAAAGGTGAAGTCTTGTTCTC 59 NA Rattus norvegicus 81 Cidea ENSRNOG00000018505 ENSRNOT00000024968 1 1 1 80 18 63099465 63099486 GAGTTCTTTCAGACCCTAAGAG 58 63099527 63106743 ATACTTATTGCCCGGTGTC 57 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 1 3 3 85 X 77120037 77135885 GTCCATCACATTAAAGTTTCCC 58 77135931 77135949 TCTTGGAGGGTCTTTGGAG 59 NA Rattus norvegicus 81 LOC100911586 ENSRNOG00000046315 ENSRNOT00000074062 2 1 1 60 10 45014947 45014966 CAGACACCAAGACCATTTCC 59 45014989 45015007 AGGGTCAGAAACACAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ribc2 ENSRNOG00000033502 ENSRNOT00000042412 2 1 1 80 7 126035020 126038773 AACAAGAAACAGGTTGTGGA 58 126038815 126038834 GATCTCGCTCATGTTATCCT 57 NA Rattus norvegicus 81 LOC100912431 ENSRNOG00000049332 ENSRNOT00000072248 3 1 1 60 3 73509573 73509592 ATTCAGCTTGTAGTTGTGCC 59 73509532 73509551 GAAGAGTGTGAATCAATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779,ENSRNOT00000084590 3 2 2 80 9 93933454 93936076 CAGAAATCAGCAAAGGTGGT 59 93936119 93936137 GTCAGCCAAGAGTTTCAGG 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859,ENSRNOT00000072538 1 2 2 80 15 106278688 106278712 CTTATTCCCTACTTGGATAACTTGG 59 106278750 106280528 GCCTTTCTGAATCAGCTCC 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000077172 3 2 4 112 7 117712145 117719216 GTGTACCAGTGTACTAATGGT 57 117712053 117712071 ATCTCACAACGACAGTTGG 58 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768,ENSRNOT00000063977 2 2 2 80 19 38864441 38868287 ACCACAGCAGAGATTCCAG 59 38868328 38868349 TTCAACACATCGACTAAGTTCC 59 NA Rattus norvegicus 81 Thegl ENSRNOG00000002085 ENSRNOT00000002860 2 1 1 88 14 33394482 33394500 GCTATTCCGATCCCTCTCC 59 33392551 33394433 AGTTTGAATAGTCTTTGGAGGG 58 NA Rattus norvegicus 81 Abo2 ENSRNOG00000045801 ENSRNOT00000061276 1 1 1 82 3 5389253 5389755 CTGACACCCACTAGGACAG 59 5389189 5389208 ATGTCAATGTTGAAGGTCCC 58 NA Rattus norvegicus 81 Akip1 ENSRNOG00000013744 ENSRNOT00000018497 1 1 1 80 1 174331988 174332007 CCCAACCCTTAGTACTTCCT 59 174332046 174334276 GACAAGTAGTATTTCCCACACTG 59 NA Rattus norvegicus 81 Ddx49 ENSRNOG00000022368 ENSRNOT00000004891 1 1 1 80 16 20878600 20879368 TCCATGATGAAGCAGAAAGAG 58 20879407 20879428 GTCAGTAGCAATAAGAATCCGA 58 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000085699,ENSRNOT00000088679 1 3 5 60 9 81666427 81666445 TGGACAAGTGCTGTACCTC 59 81666467 81666487 TTAGGTTGTGGTAAGATGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394,ENSRNOT00000000683 2 2 2 80 20 30795444 30799157 ACAACCAATGAGCAGAAGGA 60 30799199 30799218 AGTCTCAGCTGAGTACTTGG 59 NA Rattus norvegicus 81 Kcnn3 ENSRNOG00000020706 ENSRNOT00000028117 1 1 1 80 2 188886932 188886953 ATGCCTTATCAGTTTATCCACC 58 188886992 188931533 ATCACAAAGAGCTGTACTTCC 58 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 2 7 12 93 20 3352064 3352082 ACTAAAGGACACCTCAGCC 59 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000086216 1 3 12 60 20 3361584 3361605 TATGATACTCTCCCACAGACAG 59 3361626 3361644 TAGGAGCCATTTAGCCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293,ENSRNOT00000090922 1 2 2 84 X 118289471 118289489 CCTATTGAGCATAGCCGGT 59 118289532 118314560 CTGAAACTCCTATTGATATTGCCC 60 NA Rattus norvegicus 81 AABR07048064.1 ENSRNOG00000013579 ENSRNOT00000018164 2 1 1 60 5 59913247 59913265 CGAACAGCCAGAAGAAACC 59 59913205 59913224 AGGGCGTTTACCAAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 1 1 1 65 20 14595034 14618791 ATGAGGACAACCAGACGAG 59 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Srms ENSRNOG00000013003 ENSRNOT00000017668 1 1 1 80 3 176715696 176715714 CACCGGACTAGTTCCAGTC 60 176713773 176715654 ATCCCATTGAAGTACCAAGGT 59 NA Rattus norvegicus 81 Olr1285 ENSRNOG00000052267 ENSRNOT00000080457 2 1 1 60 15 35789653 35789671 CAGTCCACAGTTGTTACCC 58 35789692 35789713 AGATGATGTTCTTCTCTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hbb ENSRNOG00000058105 ENSRNOT00000090422 3 1 1 139 1 168971521 168972222 TGAGAACTTCAGGCTCCTG 59 168971400 168971418 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Cdr2l ENSRNOG00000025815 ENSRNOT00000035865 3 1 1 81 10 103942372 103942390 AAACAAGGAGCTGGAGGAG 59 103942433 103942713 CTTGGTCAGGTACTCGATCTC 60 NA Rattus norvegicus 81 Kcns3 ENSRNOG00000004899 ENSRNOT00000006499 1 1 1 80 6 36792112 36792130 TGGATGACGATGGATGGTC 59 36766044 36792068 GAAGATCACGCTGAACCCT 60 NA InUTR Rattus norvegicus 81 Zfp868 ENSRNOG00000028919 ENSRNOT00000015635 2 1 1 80 16 21521731 21521750 CTGGAAGCTTCTCAGAAGAG 58 21521788 21522075 CCATTCATATCCTGTATCAGTGAG 59 NA Rattus norvegicus 81 Adamts9 ENSRNOG00000023257 ENSRNOT00000057045 1 1 1 80 4 124767609 124767627 CCTGATGAGCAAAGAGCCT 60 124761431 124767566 ACACAGCTTGGTACACTCTC 60 NA Rattus norvegicus 81 Cables1 ENSRNOG00000012795 ENSRNOT00000017187 3 1 1 85 18 3400431 3415772 TTCGTACATGACCACAGTG 58 3415819 3415839 GAGGAAACTTCTCCTTGAAGG 58 NA Rattus norvegicus 81 Fscn3 ENSRNOG00000007942 ENSRNOT00000063987 2 1 1 80 4 55722448 55723293 TCCTCTCAGTCATCTATGATGC 59 55723330 55723352 CACATTCATACTGGAACAAGGAC 60 NA Rattus norvegicus 81 Ncapd3 ENSRNOG00000008932 ENSRNOT00000012078 2 1 1 80 8 28088800 28088824 CCAAGAGTTCTAAGGCTAATTACAG 59 28088859 28089241 GTTCATCCACCTGATAATCCTC 58 NA Rattus norvegicus 81 Fbxo43 ENSRNOG00000010459 ENSRNOT00000014333 1 1 1 85 7 74925574 74925685 ATTTGAAGGTTGCCAGGAC 58 74925507 74925525 ATGCGGCTGATACTTAGCA 59 NA Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000012296 3 1 2 95 6 127329918 127329936 ACTTGGATCTGCATTGGGA 59 127329995 127331862 GCAGTCTTGACTCCAATGG 59 NA Rattus norvegicus 81 Brsk2 ENSRNOG00000020021 ENSRNOT00000027134 2 1 1 80 1 214930539 214930558 ATCCGTATTGCAGACTTTGG 58 214930601 214931165 ATAGTGTGGAGATCCGCAG 59 NA Rattus norvegicus 81 Slc47a1 ENSRNOG00000057404 ENSRNOT00000086579 3 1 1 80 10 47641034 47641318 TGAAGCTCTTGCCTGTACC 60 47640972 47640990 CCGATGGCATTAACGATGG 59 NA Rattus norvegicus 81 AABR07000738.1 ENSRNOG00000052999 ENSRNOT00000049208 2 1 1 60 1 24891312 24891330 CCTGAGGTTTCTGACAGAG 57 24890081 24890101 ATATGGATTTGGCCTGAAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Plaa ENSRNOG00000007753 ENSRNOT00000010621 1 1 1 80 5 113555172 113555190 GGTCGTTATATGCCAGGGT 59 113554244 113555129 TCGGTAGGCACTATTTCCTG 59 NA Rattus norvegicus 81 Olr575 ENSRNOG00000046025 ENSRNOT00000049264 2 1 1 60 3 75713317 75713338 CTTGTGATTCCTATGCTGAACC 60 75713357 75713377 CCTCTTTCACATCCTTGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfb1m ENSRNOG00000056223 ENSRNOT00000078768 1 1 1 80 1 44471910 44471929 TCCTCAATGCTGATATTGCC 58 44462433 44471870 CATCAGAAAGCATCTGTAATCC 57 NA Rattus norvegicus 81 RGD1309783 ENSRNOG00000004809 ENSRNOT00000006507 2 1 1 83 3 102428801 102428981 ACACCTCTGATGAAGGCTG 59 102428736 102428754 CATACGGTTTGGATCAGCC 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537,ENSRNOT00000055333 2 2 2 80 10 86685831 86686144 AATGTTCTGCTGGCATGTC 59 86685769 86685789 GAAGTCTTCCCAGATCTCCTG 60 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000076099 3 1 3 80 9 94521497 94521516 CAGCTTTGTCATCTCAGCAG 59 94521554 94522622 GATCAGACATTCTCATCTTCAGAG 59 NA Rattus norvegicus 81 Olr1436 ENSRNOG00000046642 ENSRNOT00000075204 1 1 1 60 10 44877541 44877559 CGGACACCTTTCTCTTCAC 58 44877499 44877517 ATGTTGCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fanca ENSRNOG00000016706 ENSRNOT00000022658 3 1 1 80 19 56074692 56077532 TCTTTCTAGACTACAGGAGATGG 59 56074634 56074652 TCAGGAGTAGAACAGCCAC 59 NA Rattus norvegicus 81 LOC679087 ENSRNOG00000016330 ENSRNOT00000061333 2 1 1 60 5 25253897 25253918 AACAGTGGATTGAATTTGGTGG 60 25253938 25253957 GATCTCTTATGCAGGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm8a2 ENSRNOG00000013835 ENSRNOT00000018486 1 1 1 80 15 108453406 108453424 GCCAAACCGTTCTTCTCAC 60 108453466 108456292 CTAAGGAACAGGGATCTTCCT 59 NA InUTR Rattus norvegicus 81 Cachd1 ENSRNOG00000010514 ENSRNOT00000014354 3 1 1 80 5 119805798 119810275 AATTCACTCATCCAGTACCCA 59 119810313 119810335 TAGAAGTACCTCAGTGTGAAGTC 59 NA Rattus norvegicus 81 AABR07042633.1 ENSRNOG00000049312 ENSRNOT00000046676 1 1 1 80 19 459017 459035 ACGAACAGGAGAAGACCAG 59 458275 458413 TCTCTGAGACTGAAATCATTGC 59 NA Rattus norvegicus 81 Fkbp9 ENSRNOG00000005478 ENSRNOT00000007821 3 1 1 80 4 87230637 87230655 TGAAGTGTCTCCCAACCTC 59 87230697 87232860 ATGTACTCTGAGAACTCCTCC 58 NA Rattus norvegicus 81 T ENSRNOG00000012229 ENSRNOT00000016471 1 1 1 87 1 52890700 52890718 AGAGGTACCCGACTCTGAG 60 52889595 52890649 TTGTCGGCATAGGTTGGAG 60 NA Rattus norvegicus 81 Fpr1 ENSRNOG00000011174 ENSRNOT00000014842 2 1 1 60 1 59766668 59766690 CATACCTCAAAGCACTCTAACTG 59 59766707 59766728 GCTATTGAAGAAAGCCAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564095 ENSRNOG00000040219 ENSRNOT00000061899 3 1 1 60 5 12407263 12407283 GGAGAAGAAAGAGGAGAAGGG 60 12407305 12407323 CAAGCCAAATCCCATGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmip ENSRNOG00000027257 ENSRNOT00000039607 1 1 1 80 16 21361004 21361024 CCTTGTACTCAGAGAAGACCT 59 21360859 21360963 CAACTGGCTTCACTGTTCTC 59 NA Rattus norvegicus 81 Gmip ENSRNOG00000027257 ENSRNOT00000039607 2 1 1 80 16 21361006 21361027 AGACCTTGTACTCAGAGAAGAC 59 21360862 21360965 CTGGCTTCACTGTTCTCCT 59 NA Rattus norvegicus 81 LOC100362366 ENSRNOG00000028690 ENSRNOT00000037043 3 1 1 60 3 24600698 24600716 TCTGGACTTTGGCAGTCTC 59 24600656 24600676 GAAATTCATCCCAACCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r93 ENSRNOG00000055542 ENSRNOT00000084689 3 1 1 60 4 121779006 121779026 AAGGATGAAGTTCAAGGATGG 58 121779045 121779066 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr836 ENSRNOG00000033862 ENSRNOT00000050490 2 1 1 60 5 59265395 59265414 CCCATCATCTACAGCCTGAG 60 59265354 59265374 GATGTAGAAGGTTCCTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11e ENSRNOG00000022255 ENSRNOT00000036948 1 1 1 80 14 23089816 23092889 CACTATGTCAGATACAATCACAGG 59 23092925 23092946 TTCAGAATACAGCTTGTCACTC 59 NA Rattus norvegicus 81 Oaz1 ENSRNOG00000019459 ENSRNOT00000026341 2 1 1 60 7 11754392 11754410 CATGCCGCTTCTTAGTCAG 59 11753164 11754368 GGCAACCCTAGAACTCTCG 60 NA DesignRelaxed Rattus norvegicus 81 Olr476 ENSRNOG00000009693 ENSRNOT00000012848 1 1 1 60 3 73400432 73400450 AGTTCTTTGACCACTGTCC 57 73400390 73400409 GGATTCTCAAGATAGCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yme1l1 ENSRNOG00000017100 ENSRNOT00000023395 2 1 1 80 17 89709970 89709988 ACACAAAGGATGCAATGCC 59 89706317 89709928 CAGGCAACAGTGATACATGTC 59 NA Rattus norvegicus 81 Mcat ENSRNOG00000010539 ENSRNOT00000013994 2 1 1 98 7 124420272 124420290 ATCGAGAACTGTGTTGCTG 58 124416635 124420210 CACTGCATACAGACCTTCC 58 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709,ENSRNOT00000057160 2 2 2 80 13 113709672 113709690 CCTTGAATCTAGCCCAGTC 57 113709733 113709986 GTTTGCTGGAAAGTTCTGTG 58 NA Rattus norvegicus 81 Cog3 ENSRNOG00000000155 ENSRNOT00000000168 1 1 1 80 15 57779629 57779649 GGACATCACAGGCTATAAACC 59 57777839 57779587 CTCTGTGCAATTTGCTCCA 59 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 1 2 2 87 7 119144993 119154125 GAGTACGAGGTGTCTGCTG 60 119144924 119144942 GGTCTTCGTCCTTGATCCC 60 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 3 2 2 89 7 119144995 119154127 TTGAGTACGAGGTGTCTGC 60 119144924 119144942 GGTCTTCGTCCTTGATCCC 60 NA Rattus norvegicus 81 Prdm11 ENSRNOG00000008674 ENSRNOT00000066526 1 1 1 80 3 81890757 81890776 ATTGTGGACAAGAACAACCG 59 81877918 81890715 AATGACCACGTACCTCATCC 60 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 2 2 2 104 15 29208650 29208775 TCTACTCGGAAGGACTCGT 59 29208842 29208861 CTTGTGGCTGAATAAGTGCA 59 NA Rattus norvegicus 81 Scp2d1 ENSRNOG00000009461 ENSRNOT00000012524 2 1 1 60 3 138975057 138975077 CTAGAACTGTCAGACTTCCAG 58 138975096 138975117 CTTTGATGTGATGGCTAATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1602 ENSRNOG00000022063 ENSRNOT00000033697 1 1 1 60 13 92504436 92504454 ATTTCCAACAAGACCAGCC 58 92504474 92504496 CAGATAGGTTACCAAGAAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1602 ENSRNOG00000022063 ENSRNOT00000033697 3 1 1 60 13 92504897 92504916 GCACACCACATATCAATCAC 57 92504938 92504957 TCACAGGAGACATTGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il20ra ENSRNOG00000012286 ENSRNOT00000050656 3 1 1 82 1 15212884 15214039 AAGTCAGGAAGAACGTGGT 59 15214085 15214103 ACACAGTACAGAGTGCTGG 59 NA Rattus norvegicus 81 Cse1l ENSRNOG00000007665 ENSRNOT00000010210 1 1 1 80 3 163695038 163695057 CTGCTGTTGTGAACTTTGAG 58 163695100 163695241 ATGGGATGAACTCTTGCAC 58 NA Rattus norvegicus 81 Cse1l ENSRNOG00000007665 ENSRNOT00000010210 2 1 1 80 3 163695040 163695059 GCTGTTGTGAACTTTGAGGA 59 163695100 163695243 GTATGGGATGAACTCTTGCAC 59 NA Rattus norvegicus 81 AABR07017624.2 ENSRNOG00000049773 ENSRNOT00000072745 3 1 1 105 15 29360048 29360161 TTCTCCTAAGAGTTGCCCA 58 29359961 29359979 CCAGGTGTGGAATACTTGC 59 NA Rattus norvegicus 81 Il27 ENSRNOG00000019170 ENSRNOT00000025950 3 1 1 142 1 198007000 198007018 GAGGTTCAGGGCTATGTCC 60 198005731 198006812 CAGAGTCTGTCAGAGTCAGAG 59 NA Rattus norvegicus 81 Htatip2 ENSRNOG00000022189 ENSRNOT00000036258 3 1 1 81 1 105095039 105097611 AACAATGTGAATCAAGAGGTGG 59 105097652 105097671 AGAATCCAACATCGTGACCT 59 NA Rattus norvegicus 81 Ceacam20 ENSRNOG00000019260 ENSRNOT00000026060 2 1 1 80 1 80896229 80896248 GACCTCTAATACCGAGCCAC 60 80896288 80897266 TATACAGGCTTTGGTTTGTTGG 59 NA Rattus norvegicus 81 Ajuba ENSRNOG00000012791 ENSRNOT00000017753 2 1 1 80 15 33211107 33212432 ACTTGATTCTAGAGAAGATCCTCC 59 33211050 33211070 ACTTGTTACAAACGATGCACC 60 NA Rattus norvegicus 81 Sphk2 ENSRNOG00000021032 ENSRNOT00000028549 1 1 1 85 1 101695061 101695186 ACCTCATACAGACAGAACGA 58 101694995 101695013 CACAGTGACAATGCCTTCC 59 NA Rattus norvegicus 81 RGD1565894 ENSRNOG00000050226 ENSRNOT00000015408 1 1 1 60 18 59480033 59480054 CCACATCAGAGTACATTTGTCC 59 59480074 59480093 GAGCTTGTTTGGTGAATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mvp ENSRNOG00000020182 ENSRNOT00000027360 2 1 1 80 1 198421440 198421458 TCAAGGAGATGACAGAGGC 59 198421053 198421398 GAAGTTTCACCTGCATCTCTG 59 NA Rattus norvegicus 81 Chchd2 ENSRNOG00000051180 ENSRNOT00000071817 3 1 1 60 9 101388378 101388396 CGATGTCAAGCTCTGTGAG 58 101388336 101388354 ACCATTTGCAATCCTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC291543 ENSRNOG00000023960 ENSRNOT00000039569 2 1 1 80 18 60835590 60835609 GCATGGTCTACATGTTCCAG 59 60835510 60835549 TGACCAGCTTGAAATTCTCAG 59 NA Rattus norvegicus 81 Olr660 ENSRNOG00000034028 ENSRNOT00000042848 1 1 1 60 3 77431720 77431739 TTGTCCTCATTCTCATGGCT 59 77431760 77431780 GGGTAACGCAAAGGTTTACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf20 ENSRNOG00000009585 ENSRNOT00000012699 2 1 1 81 7 123709388 123709408 ATGGAATCTACCTGGTCTGTG 59 123685148 123709346 CAGTGGGAGCATTTCATCTC 59 NA Rattus norvegicus 81 RGD1309534 ENSRNOG00000010887 ENSRNOT00000014496 2 1 1 86 8 13845606 13846537 CTGGCAAGGTCATTGAAGTG 60 13845539 13845557 AGTGCTTCTCCAGAGTCTG 59 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922,ENSRNOT00000077754 2 2 2 80 5 124526719 124526740 TTATCGACATCATTCAGAGCAG 59 124526779 124533643 CCACATATCCACTCTTACCCT 59 NA Rattus norvegicus 81 Olr444 ENSRNOG00000053361 ENSRNOT00000091920 1 1 1 60 3 72990892 72990911 TGTGACATTTCACCATTGCT 58 72990928 72990952 GCACTACCTTATTGAACTTAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbbp5 ENSRNOG00000021289 ENSRNOT00000036110 3 1 1 80 13 49261836 49262532 ATCCTCGAGATCAGAACAAGG 59 49262571 49262592 CATGTTTGGAATCTGAAAGGGT 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 3 2 2 89 17 82080657 82080676 TTCTTATGTGGGACATCGGT 59 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Olr684 ENSRNOG00000030991 ENSRNOT00000042021 2 1 1 60 3 77985594 77985615 TTCACCTTTCTCTTAGTCTCCT 58 77985634 77985654 CCTGACTGTGGGTCTTAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr222 ENSRNOG00000019581 ENSRNOT00000026487 2 1 1 60 1 171009498 171009516 ACTCCCGACTTCATACACC 59 171009456 171009477 CAGAGATCATTCAATGACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1i ENSRNOG00000060407 ENSRNOT00000084352 2 1 1 80 7 121602041 121602063 CTTCATTACCTTCATCATCTGCC 60 121602102 121603364 GCTGTCTCTAGGGATGTAGG 59 NA Rattus norvegicus 81 Cenpa ENSRNOG00000032178 ENSRNOT00000012512 1 1 1 90 6 27075654 27075673 AGATTCCTGTGGCTTAAGGA 59 27075188 27075601 TTTCTCTTACCACGAGGCC 59 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138,ENSRNOT00000041140 2 2 2 80 10 71645417 71645437 CGTATACTGAACTGGTGTTGG 59 71645479 71661100 CCATGCCAATCTCGTTTCC 59 NA Rattus norvegicus 81 Traf7 ENSRNOG00000003131 ENSRNOT00000004192 1 1 1 80 10 13878904 13879464 CTTGAAGTCAGAGAAGTGTCC 58 13878844 13878862 CCAATCTGCTCAGCTACTG 58 NA Rattus norvegicus 81 Vom2r69 ENSRNOG00000040210 ENSRNOT00000039900 2 1 1 80 14 1016576 1016595 TCCTTGTTTCCCACAGAGTC 60 1016636 1018825 GAGGAAGGAACTGATGTTCCT 60 NA Rattus norvegicus 81 Adrb2 ENSRNOG00000019217 ENSRNOT00000026098 2 1 1 60 18 57515205 57515223 CCTTCAAGTACCAGAGCCT 59 57515163 57515182 CACACCATTAGGATGACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056633.1 ENSRNOG00000024494 ENSRNOT00000065354 2 1 1 80 7 33721426 33722520 CCTCTCCAGAAACTTCTACCA 59 33721366 33721384 AGTATTCCCGGCAGTTCAG 60 NA Rattus norvegicus 81 Tbx2 ENSRNOG00000003517 ENSRNOT00000004698 3 1 1 128 10 73280361 73280380 TAAACGCATGTACATCCACC 58 73280471 73284656 GAGTTCAGGATGGTGAAGC 58 NA Rattus norvegicus 81 Ankzf1 ENSRNOG00000019052 ENSRNOT00000032419 2 1 1 80 9 82397103 82397321 ATGCTCTACAAGGATGTTCGT 60 82397361 82397381 CAGCAGTATTGTTTCTGCCTC 60 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531,ENSRNOT00000081244 1 2 2 80 4 86430372 86430392 GACTGAGAAGATTGTGAGTCC 58 86427663 86430330 CTGTTCAAACTTGATCGCC 57 NA Rattus norvegicus 81 Nckap1 ENSRNOG00000007518 ENSRNOT00000064851 2 1 1 80 3 67749538 67749556 TACTCCATCGCCTTTCCTC 59 67746893 67749495 TATATGATGGCGCTCTTCGG 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052,ENSRNOT00000075041 3 2 2 85 10 109965700 109965818 CTGGACGGAAATGGTTCTG 59 109965633 109965651 GGAAGAGAAGGTGGAAAGC 58 NA Rattus norvegicus 81 Bid ENSRNOG00000012439 ENSRNOT00000016776 3 1 1 83 4 153446345 153450340 AGAGCCAGATTCTGAAAGTC 57 153446281 153446299 CTGTGGTCCAGTTCATCAC 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634,ENSRNOT00000067895 2 2 2 81 4 161652972 161653514 GTCATCCTACATGGCATCG 58 161652909 161652927 AGAGAACTTGAGGCTTGCT 59 NA Rattus norvegicus 81 Rabepk ENSRNOG00000018591 ENSRNOT00000025194 2 1 1 95 3 13852338 13855908 AGTCATGAATCCCGAAGCC 60 13852261 13852281 CCAATAGCTGCTGATGATGTG 60 NA Rattus norvegicus 81 Zfp951 ENSRNOG00000037421 ENSRNOT00000048419 3 1 1 81 14 6358614 6358633 CTGGATCCTTCCCAGAAGAG 59 6358355 6358571 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 2 1 1 60 13 49935399 49935421 CACTTTCTGGAGAAAGATACACC 59 49935439 49937883 ACTTCTTCAAGGAAGGTTACC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912374 ENSRNOG00000048206 ENSRNOT00000074807 3 1 1 60 5 69215356 69215377 AGCAAAGAGGTGTATGTATCCA 59 69215397 69215416 CTGAGTTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308117 ENSRNOG00000008351 ENSRNOT00000011277 3 1 1 80 15 51837354 51837372 TAGGAGAACAGGAGTCCAC 58 51836932 51837310 ACTCCATACTACCCACCTC 58 NA Rattus norvegicus 81 Rgcc ENSRNOG00000042960 ENSRNOT00000068216 3 1 1 80 15 61555257 61555276 ATGAGAAGCTGAATTCTCCG 58 61553555 61555215 CACCTAATTTGGCTTTCCGA 59 NA Rattus norvegicus 81 LOC100912427 ENSRNOG00000030807 ENSRNOT00000058700 2 1 1 60 1 186641155 186641173 ACAGGAATGACACCAAGGA 59 186641113 186641134 GGGTTATTCTTCTTTATGGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hp ENSRNOG00000014964 ENSRNOT00000020197 1 1 1 80 19 42098369 42098387 TGTGGAACACTTGGTTCGT 60 42098425 42099068 CTGTTTAAGGTGTAGATTCCATCTC 59 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476,ENSRNOT00000065743 2 2 2 90 9 94323145 94324704 TATGTGGGAGGATGATGCA 58 94324758 94324776 GATGAGATTCTCCCAGCAG 57 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 3 2 2 100 7 129860680 129862038 CTACACTGACTTTGATGGCAC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 Znrf2 ENSRNOG00000049057 ENSRNOT00000072271 1 1 1 80 4 85060289 85075714 CGTATAATGAGGATGTGCTGAG 59 85075755 85075773 CTATGGTGTCTCCCTGCTG 60 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 2 2 2 81 5 50125103 50125543 CTGGTTTGTTATCTTCCTTGC 58 50125042 50125061 GCCTTTCATGATGTTGTCTG 58 NA Rattus norvegicus 81 Olr14 ENSRNOG00000050901 ENSRNOT00000048861 1 1 1 60 1 149632914 149632938 GGATGTATATGGAAGCTGTAATGAG 59 149632878 149632898 AGGTCAAGGGTGATAAGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir541 ENSRNOG00000036486 ENSRNOT00000054594 3 1 1 60 6 133892675 133892693 TCTGATGTTGGTCACACTC 57 133892715 133892735 AGAGTATGGATTCTGTGTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml3 ENSRNOG00000031955 ENSRNOT00000046667 1 1 1 60 17 70072606 70072629 AGGAGGTAGATGAAATGATACAGG 60 70072648 70072666 TCATAGTTCACTTGCCCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam209a ENSRNOG00000005235 ENSRNOT00000006949 3 1 1 96 3 170476118 170477183 AAGAACAAGGAGCAGAATCC 58 170477242 170477260 AAGTGAAGTCTTTGCTGGG 58 NA Rattus norvegicus 81 Moap1 ENSRNOG00000033970 ENSRNOT00000038816 3 1 1 60 6 126621480 126621499 CCTCAAGATAAACAACCCGT 58 126621439 126621459 TATTGTCTCAAGCGTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gareml ENSRNOG00000048004 ENSRNOT00000074348 2 1 1 90 6 27634825 27635349 AGTGTCAAGGTGGTGTCAG 60 27634753 27634771 GACCCATGAGAGTGAGCTC 60 NA Rattus norvegicus 81 Znf740 ENSRNOG00000012192 ENSRNOT00000016240 3 1 1 81 7 143814022 143814347 GGTGTTCCAGTCAGATGGA 59 143814391 143814410 TTGCGGGATTTATCACTGTC 58 NA Rattus norvegicus 81 Slc22a18 ENSRNOG00000020562 ENSRNOT00000027925 3 1 1 80 1 216678303 216678324 CATCATACTCACCTATGTGCTG 59 216678361 216681481 CGAGACAGATATGGTATGATGGA 59 NA Rattus norvegicus 81 Crygs ENSRNOG00000038355 ENSRNOT00000058402 2 1 1 80 11 81801189 81801802 TGTTCATCTGTCTAGTGGAGG 59 81801844 81801862 GTGGTTTCGTACATCTGGC 59 NA Rattus norvegicus 81 Slc10a4 ENSRNOG00000026091 ENSRNOT00000029721 2 1 1 81 14 37765343 37768560 CATCGTGAAGGTTTCCCTG 59 37765280 37765298 TTCGGGTCCTAACATGGTG 59 NA Rattus norvegicus 81 Isg15 ENSRNOG00000021802 ENSRNOT00000039263 3 1 1 150 5 173626165 173626186 TCCACAGCTCAGACTTTAAGAG 60 173625411 173626054 TTAGGTTCCAGGTCATGGC 59 NA InUTR Rattus norvegicus 81 Grcc10 ENSRNOG00000025810 ENSRNOT00000019570 3 1 1 100 4 157265337 157265355 CAAGATGCTGCAATTCGTG 58 157264599 157265275 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 3 2 2 84 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819203 109819223 ATGCTGCTTCTCATTCTTCAG 59 NA Rattus norvegicus 81 Gas1 ENSRNOG00000050485 ENSRNOT00000073271 2 1 1 96 17 4847602 4847620 TCGGTCAAGGAGAACATGG 59 4847680 4847698 CGTAGTAGTCGTCTAGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr115 ENSRNOG00000046188 ENSRNOT00000040224 3 1 1 60 1 168724891 168724910 CCTTGTCTCCTATACGCCTG 60 168724850 168724870 GACCTTCTTTCCAATTCGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3548 ENSRNOG00000035650 ENSRNOT00000053773 3 1 1 60 5 173489412 173489430 AAGAAATCCAGCACTGTCC 58 173489452 173489472 CTTCCTACCAAAGCATACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754,ENSRNOT00000091712 3 2 2 80 19 55907911 55907929 TGGTTGCTTTCCATGAGTC 58 55907971 55909740 CTATGGAGACCTTCATCACAG 58 NA Rattus norvegicus 81 Wdr6 ENSRNOG00000020185 ENSRNOT00000027411 3 1 1 80 8 117360184 117360203 GCTAGATGAGTACTGGGACC 59 117360009 117360142 GCAAGAGACATGTACCTGGT 60 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 1 1 2 86 3 172433196 172433309 CCATTGAAACCATTGTGGC 58 172433364 172433383 CAGCAATGTAGTCCACTCTG 58 NA Rattus norvegicus 81 AC117012.1 ENSRNOG00000056683 ENSRNOT00000088803 3 1 1 60 3 76862809 76862827 GATTACCATTCTGTGGCCC 58 76862851 76862869 AACAAGGGCTGCAAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps17l ENSRNOG00000048585 ENSRNOT00000036340 2 1 1 60 15 49009109 49009128 CCGGCTATGTCATACATCTG 58 49009151 49009169 ATGGAGATGCCTCTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.2 ENSRNOG00000053351 ENSRNOT00000089754 2 1 1 81 X 123866181 123866199 GCTTCCTCAGTGTAGAAGC 58 123862783 123864131 TTCCGAAACCATCTCTTCAC 58 NA Rattus norvegicus 81 Wbscr16 ENSRNOG00000001483 ENSRNOT00000002032 2 1 1 80 12 25579968 25581525 GTGCTATACTGAATGAAGAAGGAC 59 25581564 25581582 CCGTTTCTGAGAGGTTTGG 59 NA Rattus norvegicus 81 Slain1 ENSRNOG00000024125 ENSRNOT00000065710 3 1 1 81 15 87888813 87896156 TAGGACCAATGGAGATAAACTACG 60 87896196 87896214 GAGGTTGCTACTGACTGCA 60 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 3 2 2 80 6 132943696 132943716 TATCTGGAGATTGAGCTGAGG 59 132942510 132943655 GTAGTTGCTCTGAATCCTGC 59 NA Rattus norvegicus 81 LOC100910597 ENSRNOG00000050668 ENSRNOT00000074466 3 1 1 60 1 169637378 169637397 GCTGAGAAATGGCTTAGGTG 59 169637419 169637438 ACAATAATTCCTCTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa4 ENSRNOG00000005512 ENSRNOT00000007567 2 1 1 90 4 38239605 38239623 CGTGTTTATTGGAGCAGGG 59 38238985 38239551 ATTCTTCCTGTCCCAGCTG 59 NA Rattus norvegicus 81 Olr851 ENSRNOG00000052071 ENSRNOT00000082758 2 1 1 60 5 69577586 69577604 AGTGATGACTCCCATGCTC 59 69577544 69577564 AGCCTTCACATCCTTATTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp1 ENSRNOG00000003084 ENSRNOT00000004232 1 1 1 80 13 98877116 98877134 TGGTGGACATTGTGAAAGG 58 98877177 98877707 AGATCCAATACCTGCTCTCC 59 NA Rattus norvegicus 81 Chst5 ENSRNOG00000021521 ENSRNOT00000026262 1 1 1 114 19 44135289 44135307 GAGCTGCTCATTGTATGCG 60 44116916 44116934 ACTACAGTGCTGGAGAAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07027447.1 ENSRNOG00000047534 ENSRNOT00000071312 3 1 1 60 17 31706370 31706388 GGACAGTCTCCTCAGTTCC 59 31706328 31706346 TGTCTGAGACTCCTGATGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.1 ENSRNOG00000055770 ENSRNOT00000072167 2 1 1 60 5 163773622 163773640 CAAAGGAACTCTGAGGAGG 57 163773662 163773682 CTTTCCAAGAAGACTCAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr468 ENSRNOG00000056132 ENSRNOT00000085420 2 1 1 60 3 73302742 73302761 CCCATGTACTTCTTCCTCAG 57 73302781 73302802 TAACATTGGTGGCATAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ascc1 ENSRNOG00000056647 ENSRNOT00000085229 1 1 1 80 20 29568237 29594723 AAGAAGTGTTCCAAGGATCG 58 29594764 29594784 CAACATGCCAATAGTTAGGTG 57 NA Rattus norvegicus 81 Ascc1 ENSRNOG00000056647 ENSRNOT00000085229 3 1 1 80 20 29568240 29594725 AAGTGTTCCAAGGATCGTG 58 29594766 29594787 TACCAACATGCCAATAGTTAGG 58 NA Rattus norvegicus 81 RGD1565183 ENSRNOG00000037673 ENSRNOT00000057158 2 1 1 60 1 84573572 84573593 CTCCAGTTTCTTGATCAAGAGG 59 84573613 84573632 CTTCAGATTATTGGGCTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Got2 ENSRNOG00000011782 ENSRNOT00000015956 3 1 1 86 19 9608495 9611376 GAAGCAATGGTTGCAGGAG 60 9611425 9611444 CCCTCTTTCTTCAGGTTGGA 59 NA Rattus norvegicus 81 Ldlrad2 ENSRNOG00000033503 ENSRNOT00000055947 1 1 1 152 5 155914958 155915960 AAGTGTTGGAAGGTCCCTG 60 155914824 155914842 TACAAGCTGCACAACACCT 60 NA Rattus norvegicus 81 Wbscr27 ENSRNOG00000046700 ENSRNOT00000074851 1 1 1 85 12 24772557 24774485 ACCCTAAAGGGACCTTTGAC 59 24772491 24772509 TAGGAGCTCAGGTATGGCA 60 NA Rattus norvegicus 81 Riok3 ENSRNOG00000023376 ENSRNOT00000039377 2 1 1 80 18 3587193 3587211 TTGTACAAGGAATGCACCC 58 3587255 3587364 AATCAACCAGACCTTCCCA 59 NA Rattus norvegicus 81 Mir103-2 ENSRNOG00000035496 ENSRNOT00000053619 1 1 1 60 3 123833677 123833697 GTGCTTTCAGCTTCTTTACAG 58 123833718 123833737 CCTGTACAATGCTGCTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnp ENSRNOG00000017496 ENSRNOT00000023872 3 1 1 80 10 88494671 88494692 CTGTACAACCAAATTCTGTGAC 58 88494731 88495965 TAAGATCTCCTCACCACATCC 59 NA Rattus norvegicus 81 Fam19a5 ENSRNOG00000049349 ENSRNOT00000074625 1 1 1 135 7 128648581 128648599 AGATTGTGACCCTAGACCG 59 128648698 128690776 ATAATTCGAGCGTCCACAC 58 NA Rattus norvegicus 81 AABR07017825.3 ENSRNOG00000048128 ENSRNOT00000072946 2 1 1 61 15 31462833 31462949 GGGATAAACTTTCTCCTGAGAG 58 31462969 31462989 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100359766 ENSRNOG00000048328 ENSRNOT00000060380 1 1 1 90 15 31852453 31852565 TTCTCATGAGAGTTGCCCA 59 31852619 31852637 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Olr1641 ENSRNOG00000047787 ENSRNOT00000060439 2 1 1 60 15 28834886 28834904 AGGAAGTGAATTCTGCCCT 59 28834844 28834862 TTGTCTCCACCCACATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ret ENSRNOG00000014751 ENSRNOT00000047685 2 1 1 80 4 150215990 150216101 TTGGCTGAAATGAAGCTCG 59 150215928 150215948 AGAGATCTTCATCTTCCGTCC 59 NA Rattus norvegicus 81 Tab1 ENSRNOG00000017285 ENSRNOT00000067904 2 1 1 84 7 121370357 121370375 GAGAAGGAGATCTCGGGAG 58 121370423 121372675 TGTTCGTACCAACATTGGC 59 NA Rattus norvegicus 81 Sgk494 ENSRNOG00000037214 ENSRNOT00000056217 1 1 1 80 10 65553839 65553859 CTAAAGGTTCGTTTGGAACTG 58 65553901 65554041 CTTTGGGTACCACCTTCAC 58 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000056411 ENSRNOT00000077985 2 1 1 123 17 44520749 44520767 GAGGGACAACAAGAAGACG 58 44520854 44520872 GATATTAGGCAGGACACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adipor1 ENSRNOG00000004143 ENSRNOT00000005551 2 1 1 92 13 51259153 51259429 TTTGACATATGGTTCCAGTCTC 58 51259482 51259500 TTCCTGTAGGTTGGACACC 59 NA Rattus norvegicus 81 AABR07041481.1 ENSRNOG00000005665 ENSRNOT00000007474 2 1 1 88 X 131381676 131381694 TGTATCAGGTGGCTGTGAC 59 131381757 131381775 CAAAGCCTTGAACCCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ap1g2 ENSRNOG00000025619 ENSRNOT00000033977 3 1 1 80 15 33765496 33765657 TACCAACAGCATCAAGAATGAC 59 33765437 33765457 CCCATGGTACTCAGAGTACAC 60 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000056281 ENSRNOT00000083417 2 1 1 60 17 44839802 44839820 GTTTGAGGACACCAACCTG 59 44839760 44839778 ATCCTTGGGCATGATGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 2 2 2 82 9 100286317 100287254 ACAAGGCCAAATCCAAAGTC 59 100287296 100287317 CCACAACTTGGACAAATAAGTG 58 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 3 2 2 80 12 25208987 25209006 GGCTACCAGTCATATCTGTG 58 25209048 25210547 TCAGCTTCTGCAACATACTG 58 NA Rattus norvegicus 81 Vom1r109 ENSRNOG00000056653 ENSRNOT00000088203 3 1 1 60 1 63263806 63263830 TACTACCTCATCCTTTACTACAGAC 59 63263845 63263866 GCATAAGAATCAAATCTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtfmt ENSRNOG00000014602 ENSRNOT00000019671 2 1 1 80 8 70981045 70981063 ACTCTGGATGGAGAACACC 59 70981107 70982408 CCCATCACTTTCGGATCTG 58 NA Rattus norvegicus 81 Mir194-1 ENSRNOG00000035482 ENSRNOT00000053605 3 1 1 61 13 103250585 103250603 TCACGTGTAACAGCAACTC 58 103250628 103250646 AAAGTAACAGCAGCTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2053.2 ENSRNOG00000017461 ENSRNOT00000023482 3 1 1 60 2 185805401 185805419 AGCTAGTGTAGGCATCCAG 59 185805359 185805377 GATCCACTTAGGGTTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 M1ap ENSRNOG00000007288 ENSRNOT00000009701 1 1 1 80 4 113811899 113835421 GCAATGATGAGAGTTCCATCC 59 113835463 113835481 AGAAGACCTCCATGCTGAC 59 NA Rattus norvegicus 81 Vom1r67 ENSRNOG00000052591 ENSRNOT00000073670 2 1 1 60 4 87353256 87353276 GTTCTCACTCAAGAATGTCCT 58 87353296 87353316 AAACATATTGGCTAGGACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Marveld1 ENSRNOG00000042620 ENSRNOT00000064160 3 1 1 91 1 261391394 261392575 CCTCTAAGGTTTCCATGTTGC 59 261392628 261392646 GACCAGTTCAGCCAATCAG 59 NA InUTR Rattus norvegicus 81 Auts2 ENSRNOG00000000885 ENSRNOT00000001182 2 1 1 80 12 28229422 28229441 CAATCCTATCGATGTGGCTG 59 28229483 28230620 AAAGGATCTGTCAACCTTGG 58 NA Rattus norvegicus 81 AABR07003171.1 ENSRNOG00000027102 ENSRNOT00000030895 3 1 1 82 1 97780149 97780171 GTCCAAATACCACTCTTTACCTC 59 97780213 97781426 GTCTCCATTTGAACCACGG 59 NA Rattus norvegicus 81 AABR07027811.3 ENSRNOG00000053155 ENSRNOT00000052073 3 1 1 67 17 44760227 44760245 TCGACAGAGTTGCTGATCC 60 44760275 44760294 TTGAAGTCCTGAGCAATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr-rs3 ENSRNOG00000045732 ENSRNOT00000039037 3 1 1 60 1 59902460 59902478 TTCAACAGCTGTCTCAACC 58 59902418 59902439 GTTTCTCCCTAAATTCTTGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp5 ENSRNOG00000014061 ENSRNOT00000018889 1 1 1 80 1 274245727 274250025 TTCCTTAAAGGTGGGTACGA 58 274250067 274250086 CTTCTCTTGTGAAATGGGCT 58 NA Rattus norvegicus 81 Aadacl4 ENSRNOG00000037030 ENSRNOT00000034394 3 1 1 91 5 162681764 162681782 CCTAAGGCAGTGTCCTCAG 60 162680242 162681711 AGATTGTGGTAACTGTCCAGG 60 NA Rattus norvegicus 81 Dok1 ENSRNOG00000007412 ENSRNOT00000010020 2 1 1 80 4 113865516 113865534 CAGAGTCAAATCCTGGAGC 58 113865284 113865474 GGAGAACATTACCTTGTCTCG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000090402,ENSRNOT00000089305 3 3 3 80 1 87098619 87099968 TCCATATCAGCTGGAAGGA 58 87098557 87098578 GTTTGTCATACTCAATCAGCTC 58 NA Rattus norvegicus 81 AABR07068221.2 ENSRNOG00000049962 ENSRNOT00000064642 3 1 1 80 9 91048947 91049968 ACTTCCTCTCAGCTGTTCC 59 91048885 91048908 TTCTTCTACTATGACTTCCAGCTC 60 NA Rattus norvegicus 81 Klrb1 ENSRNOG00000057410 ENSRNOT00000084289 3 1 1 81 4 162787903 162789154 GGACTCAGTGTCTTAGTGGG 60 162789195 162789216 CAGTCTTGTTCTCTTGAACAGC 60 NA Rattus norvegicus 81 Ghdc ENSRNOG00000018906 ENSRNOT00000025590 1 1 1 80 10 88676088 88676388 AGGGAGAACACAGACATGAC 60 88676027 88676048 CTCTTCACTTTCTTTCTGCTGG 60 NA Rattus norvegicus 81 Ugdh ENSRNOG00000002643 ENSRNOT00000003691 1 1 1 80 14 44492054 44492181 ACTTGAATCTACAGGTTCTGTC 58 44492221 44492240 CTCTGTCTGGGTTCTTTAGG 57 NA Rattus norvegicus 81 Ugdh ENSRNOG00000002643 ENSRNOT00000003691 2 1 1 80 14 44492055 44492182 CTTGAATCTACAGGTTCTGTCC 59 44492221 44492241 ACTCTGTCTGGGTTCTTTAGG 59 NA Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000077440 1 1 2 74 7 98709085 98709103 CTTGCTCAAAGAGCTGCAC 60 98607056 98607074 TGGGTGAAGTTCATGAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Mettl16 ENSRNOG00000002764 ENSRNOT00000003750 1 1 1 80 10 61648689 61651705 GAAGCCAAGGGTGTAAACTC 59 61651747 61651766 CATGATCTCTGTGATGCCTC 58 NA Rattus norvegicus 81 Vps9d1 ENSRNOG00000028904 ENSRNOT00000051945 2 1 1 82 19 56041909 56041927 TTTGTGGTGCTGAGAAGTG 58 56041365 56041865 ATCAAGTACCCTTCATGAGTG 58 NA Rattus norvegicus 81 Tarbp2 ENSRNOG00000042355 ENSRNOT00000064661 2 1 1 90 7 144126296 144126443 GGATATTGAGGAACTGAGCC 58 144126496 144126514 AGTGGCAGAACCATAACAC 58 NA Rattus norvegicus 81 Med24 ENSRNOG00000008711 ENSRNOT00000011947 1 1 1 80 10 86623321 86623340 CCATTCACATCCTTGACACC 59 86622883 86623281 CCTTCAGCAGTTCCTTAATCAG 59 NA Rattus norvegicus 81 Apbb2 ENSRNOG00000025509 ENSRNOT00000050664 1 1 1 107 14 43517821 43517839 ATCATGGACACTGGGAACC 59 43517910 43522924 CTGATATCGCAGCATGCAG 59 NA Rattus norvegicus 81 Scai ENSRNOG00000025278 ENSRNOT00000039410 2 1 1 80 3 23367615 23370620 AGCTTTGCAAGATCAGTCTC 58 23367554 23367572 GACACAAATAGGAAGGCCA 57 NA Rattus norvegicus 81 Ffar1 ENSRNOG00000024009 ENSRNOT00000028533 3 1 1 60 1 89308677 89308695 GAGCACTTCTCACACTCCT 59 89308635 89308654 AAACTAGCCACATTGGAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc2 ENSRNOG00000017753 ENSRNOT00000024246 1 1 1 80 1 80296716 80296877 GAGATTGAGAAGGTCATAGAAGAG 58 80296915 80296934 TAAGAATGGCAGCTTCTCAC 58 NA Rattus norvegicus 81 Pbp2 ENSRNOG00000008667 ENSRNOT00000011461 2 1 1 60 4 169092842 169092865 CAGTAGGAAAGAACCCATATACAG 59 169092805 169092823 GCCTTTCATGTTGACCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex19.1 ENSRNOG00000036670 ENSRNOT00000054928 3 1 1 85 10 110346862 110346880 CCAGACATTGGAGCAAGTG 59 110346929 110347074 AACAGGACCGTAGACTCTC 58 NA InUTR Rattus norvegicus 81 Duoxa1 ENSRNOG00000018005 ENSRNOT00000024245 1 1 1 80 3 114241587 114242259 CACATTAGCCACAGGACTG 58 114241525 114241543 TTCAGTCTGTGAGGTTGCA 59 NA Rattus norvegicus 81 Il23r ENSRNOG00000007544 ENSRNOT00000010151 1 1 1 80 4 98281062 98285981 CGTGAAGAGTTTGGAGACAG 59 98281001 98281019 CCTTGCAATGAGTCAGTGG 59 NA Rattus norvegicus 81 Olr250 ENSRNOG00000028802 ENSRNOT00000041144 3 1 1 60 1 172349225 172349245 GTGTTCATCATAGCCGTTTCC 60 172349265 172349285 TGGAGTGTATCTTCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcng2 ENSRNOG00000053640 ENSRNOT00000088054 3 1 1 226 18 76878922 76878940 GCTTTCATGGAGCTTCTGG 59 76836973 76836991 CGTTGATTATGACGTGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pla2g5 ENSRNOG00000016838 ENSRNOT00000022716 1 1 1 80 5 157248939 157249723 TAGTCATCTGCGAACACGA 59 157248877 157248895 TTCTCCTCAGGCAGTAGAC 58 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 3 3 3 80 1 82558633 82558652 GCTGAAGGAGAAACTACGAG 58 82558253 82558591 CCAAATTCTCCTTCTCCCAG 58 NA Rattus norvegicus 81 LOC100909631 ENSRNOG00000048418 ENSRNOT00000073141 1 1 1 80 3 159114430 159114449 GAAGTCCATCTTCTTCAGCC 58 159114490 159114738 TTTGTCCCACCATAGATTCCT 59 NA Rattus norvegicus 81 LOC102557244 ENSRNOG00000017519 ENSRNOT00000058040 3 1 1 80 1 79338672 79349940 TATACCTCAACGTGTACTCACC 59 79349980 79349999 GTGGTACTGATTCAACGGTG 59 NA Rattus norvegicus 81 Rn60_X_0743.2 ENSRNOG00000051181 ENSRNOT00000076218 2 1 1 60 X 73481461 73481481 ATGACAGCTATAACAACGGAG 58 73481502 73481521 AAATTGCTTCCACTACCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 2 4 4 80 1 81793828 81794036 GAGTTCAAGAACCTGGATATCAC 59 81794074 81794094 AGCTTTGTCTTTGGTTAGTCG 59 NA Rattus norvegicus 81 Pfn4 ENSRNOG00000050386 ENSRNOT00000074570 2 1 1 80 6 30032815 30037012 CCAGGATTTAGTGTAATGCCA 58 30032755 30032775 TTCCCTTCGGGTTAATAATGG 58 NA Rattus norvegicus 81 LOC100911064 ENSRNOG00000060632 ENSRNOT00000078704 2 1 1 60 15 36213379 36213400 GACAGAGAAGAACATCATCTCC 58 36213340 36213360 AGTGATGAAGAAGTAGAGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc7a7 ENSRNOG00000010296 ENSRNOT00000014391 3 1 1 80 15 33013793 33014012 GGATCGTAGCGTCTACCAC 60 33013731 33013750 ACTCTCCATCTTCCAAGTCC 59 NA Rattus norvegicus 81 Emc9 ENSRNOG00000019162 ENSRNOT00000026001 1 1 1 81 15 34259549 34262586 TTGGATGATCAGAGCCCTG 59 34259486 34259504 TAATAAGCACTGCGTTGGG 58 NA Rattus norvegicus 81 RGD1359127 ENSRNOG00000016399 ENSRNOT00000021939 3 1 1 130 7 12256623 12256641 GTAGAGCAGATCCTGGAGG 59 12257247 12257265 TAGATCTGCTCCTGCTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Slc38a7 ENSRNOG00000012007 ENSRNOT00000061498 3 1 1 80 19 9629487 9629505 TAGCCATTGCAGTCTACAC 57 9629547 9629769 CAGCTATAATCTTGTCCTGCT 58 NA Rattus norvegicus 81 Ginm1 ENSRNOG00000015239 ENSRNOT00000020810 2 1 1 80 1 1877070 1877093 CTGTGACATATAGTACCAGTTCAC 59 1876197 1877032 TTTGTTGAGCTTGTCTTCCA 58 NA Rattus norvegicus 81 Olr70 ENSRNOG00000015673 ENSRNOT00000020981 1 1 1 60 1 168160196 168160214 TATGGGCTCTTTGTTGTGG 58 168160154 168160175 ATGAGAGGAATATGAGTAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758,ENSRNOT00000037100,ENSRNOT00000011801 3 3 3 80 13 52363974 52412929 CAGCCAAATGCTAGATCCAG 59 52363913 52363932 GTTTCTTCCAGGTTCTGTCG 59 NA Rattus norvegicus 81 Ankrd35 ENSRNOG00000025108 ENSRNOT00000056225 1 1 1 80 2 198808358 198808377 GCTTTGGGTACACAAGACAG 59 198808420 198809081 CAGTTCACGACCTCCTCTC 60 NA Rattus norvegicus 81 Med13 ENSRNOG00000003679 ENSRNOT00000035280 2 1 1 80 10 73712860 73713623 ATGGAGAATTGAAAGACTGGAG 58 73712801 73712819 GACACATGTCTTTGAGCCT 58 NA Rattus norvegicus 81 Rlim ENSRNOG00000002824 ENSRNOT00000091325 1 1 1 80 X 73765713 73765732 GTTGCTCAGAAGACTACAGC 59 73764436 73765670 TCTGAAGACTCTCCAGCTC 58 NA Rattus norvegicus 81 Mir215 ENSRNOG00000036241 ENSRNOT00000054364 1 1 1 60 13 103250864 103250885 TGACCTATGATTTGACAGACAG 58 103250905 103250924 ATTGGCCTACAGAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb10 ENSRNOG00000014568 ENSRNOT00000019624 2 1 1 80 10 14090731 14090750 ACATCACGGAATGCAAAGAG 59 14090551 14090688 GGTCCACTTTGAAGTCCCT 59 NA Rattus norvegicus 81 Ociad2 ENSRNOG00000002196 ENSRNOT00000002991 2 1 1 80 14 37443842 37444650 CCTAAAGTTGCACTGGCTG 59 37444692 37444712 ATGGAATTTACTCTGGCACAC 59 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000048542 ENSRNOT00000073741 3 1 1 81 15 35264291 35264312 TCTTCCATCACTACTCTGAGAC 59 35263851 35264249 CCAGAGTCACCCTTGTACG 60 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596,ENSRNOT00000055285 1 2 2 80 7 144866732 144866924 TGTGTCAAGAGAAGATTCTCAG 58 144866963 144866983 GTGTCTTCTTTAATACCGCCA 59 NA Rattus norvegicus 81 Nudcd1 ENSRNOG00000024929 ENSRNOT00000006685 3 1 1 80 7 83316859 83316878 CTTATAAGAGACCCTGCCCA 59 83314184 83316818 TGGATTTGGATTCAGTTCGTC 59 NA Rattus norvegicus 81 Clcn6 ENSRNOG00000008345 ENSRNOT00000011287 3 1 1 80 5 164825254 164825273 TCAACTGTCTGAACAAGAGG 58 164824733 164825211 TCTCTAAGACCCTGACGAG 58 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709 2 1 2 80 5 58309287 58309305 GATAGCCGAAGTCCTTTGG 58 58308562 58308971 GTTCTCTTAGCTCTTGTCGC 59 NA Rattus norvegicus 81 Ascl5 ENSRNOG00000033391 ENSRNOT00000048033 1 1 1 60 13 52887762 52887784 CAACGTACCCTTTCTGTTATACC 59 52887801 52887822 AGTGTAGGCATCGTAGTAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582,ENSRNOT00000040306 2 2 2 80 3 104286786 104286804 CGCATCCCAACCTTATGAG 58 104286549 104286742 TGGCACCGAATACTTTCAC 58 NA Rattus norvegicus 81 Hmgn5b ENSRNOG00000029078 ENSRNOT00000048744 2 1 1 91 1 124479697 124479965 ACTGTCTGCTATGCCTGTG 60 124482151 124482170 CTTCCACGACATTTGTGGTC 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 3 2 2 80 11 87916341 87916359 AAGACTCTTGAAGCACAGC 58 87915044 87916297 AAGTACCTCTCGGGTTCTG 58 NA Rattus norvegicus 81 Eftud1 ENSRNOG00000032723 ENSRNOT00000047408 2 1 1 80 1 144625485 144625506 ATAGTGGAACTGAAATTCACCC 59 144625545 144627071 TCCTGTAAGTGCGTTAATCTG 58 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 1 2 2 84 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939449 198942665 GAATACATCCACCATGTTGGA 58 NA Rattus norvegicus 81 Cetn1 ENSRNOG00000016409 ENSRNOT00000021955 2 1 1 60 18 786460 786478 TGTGAAGGAGCTGAAGGTG 60 786418 786436 CATCTCTTCCTTCCTGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380,ENSRNOT00000046025 3 2 2 80 1 189259979 189260118 CGATGTGCAGATTGTAGACG 59 189260161 189260179 GTAGGTTTGATGCGGATGG 59 NA Rattus norvegicus 81 Mir205 ENSRNOG00000035520 ENSRNOT00000053643 3 1 1 60 13 112233348 112233366 TCCTCCTGTCCTTCATTCC 58 112233306 112233326 TTCACTCCACTGAAATCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm6 ENSRNOG00000000233 ENSRNOT00000000249 3 1 1 80 10 36352188 36353206 CGCTTCAATGGTAGTGCAG 59 36353248 36353268 GTACTGGAAGATGTCATAGCG 58 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 2 2 2 80 X 10404719 10405261 TCCTAAGGAAATACAGATGCTG 58 10404660 10404679 GAAGTAGACCCAACTCTTCC 57 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 3 2 2 80 4 163220743 163220762 GGTCTATCTCGCAATCAGAG 58 163217927 163220701 TCTGACTTGAAACGAGTTGG 58 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810,ENSRNOT00000035323 3 2 2 82 16 47871755 47874637 ACGAGGATCAGGAGATGGA 60 47871691 47871712 TGAAACTGGACTTAATTCACGG 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633,ENSRNOT00000044147 1 2 2 80 4 181401125 181406110 CAGAGGAGTTTCACACCAG 58 181406154 181406172 TCTCACAGGTTTCTTCGTC 57 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633,ENSRNOT00000044147 2 2 2 80 4 181425838 181425856 GGTTTAGACCTGGCTTGGA 59 181425897 181426178 TCCCTTCTGAATCTTCCATCTG 60 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 2 1 1 61 7 11625460 11626358 GATCGAACGCATCAAGGTC 59 11626382 11626401 CATGTTGCTCACAGTAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC498826 ENSRNOG00000031060 ENSRNOT00000046326 3 1 1 80 18 15276734 15283745 ACAAGAGATGGACTGGAGC 59 15276672 15276690 ACCATGACCATTGCAACTC 59 NA Rattus norvegicus 81 Themis2 ENSRNOG00000012965 ENSRNOT00000017340 1 1 1 80 5 150982673 150986517 GAGTCTACTTCGAGGGTTCC 59 150982612 150982631 GGGTGACCTTGATTAGGTCC 60 NA Rattus norvegicus 81 LOC100362338 ENSRNOG00000033625 ENSRNOT00000043796 2 1 1 60 17 11037621 11037640 TTATGCCCGAGATGAAACTG 58 11037580 11037601 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr18 ENSRNOG00000012379 ENSRNOT00000016733 3 1 1 80 7 12561653 12561673 CAAAGAACCTAGCTACCTGGA 59 12561509 12561612 CTGCCTAGCATGTTCTTCTC 59 NA Rattus norvegicus 81 Fbxl17 ENSRNOG00000013875 ENSRNOT00000064431 1 1 1 80 9 110818659 110908620 GAACAAGTTAGTGACAGACCAG 59 110818600 110818618 CAACCCATGAAGCCAACAC 60 NA Rattus norvegicus 81 Usp50 ENSRNOG00000011401 ENSRNOT00000015238 2 1 1 80 3 119234211 119234234 CTCACTCCTTATATCTGTCCAGTC 60 119225363 119234174 CAGATCTCCAAAGTGGTTCAC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700,ENSRNOT00000079004 1 3 3 80 2 123348830 123350918 CATACCAAGAAATCGAGGATGAC 59 123348772 123348793 CATCATCGAAGTAGGATAGCCA 60 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700,ENSRNOT00000079004 3 3 3 80 2 123348830 123350917 ATACCAAGAAATCGAGGATGAC 58 123348771 123348791 CCATCATCGAAGTAGGATAGC 58 NA Rattus norvegicus 81 Ube3c ENSRNOG00000010702 ENSRNOT00000015232 2 1 1 80 4 2557754 2557775 GAGACACGAGAAGAAATTTCTG 58 2557815 2559331 GCTGGGTAACTTTATCTGCT 58 NA Rattus norvegicus 81 Sec61gl ENSRNOG00000049016 ENSRNOT00000073045 3 1 1 82 5 56753666 56753685 GTGAAACTGATCCACATCCC 59 56751835 56751853 ATCAGATCCGAGGGAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Gramd1a ENSRNOG00000021106 ENSRNOT00000028660 1 1 1 80 1 89570213 89570231 ACTACTTCTACACTGCCCA 58 89568947 89570170 GGATCTCTGAGGATACACGA 58 NA Rattus norvegicus 81 Gramd1a ENSRNOG00000021106 ENSRNOT00000028660 2 1 1 80 1 89577336 89577356 TACAAACAACGTAACGAGGAC 59 89577134 89577296 GCAGGAGTAATCCACAATGAG 59 NA Rattus norvegicus 81 Dhcr24 ENSRNOG00000006787 ENSRNOT00000009402 3 1 1 80 5 126175994 126176014 TTGCTGTATTCCTTGGATGAG 58 126176055 126180265 AATGCTATTCAGCTTGCTGG 59 NA Rattus norvegicus 81 AC096404.1 ENSRNOG00000000574 ENSRNOT00000000700 2 1 1 104 20 29579060 29579568 TCTATCTGCATGGGATCGG 59 29577787 29577805 CATCAGTAGGGACACCACC 60 NA Rattus norvegicus 81 Ino80c ENSRNOG00000016532 ENSRNOT00000022169 1 1 1 80 18 16002330 16003566 ATCCCAACTTTGTGCACTC 58 16002268 16002288 GGATCTGTTTGAGGTTCTTCC 59 NA Rattus norvegicus 81 Gcc1 ENSRNOG00000007792 ENSRNOT00000010246 2 1 1 91 4 55711530 55712541 GAAATGAGGAAGACAGCCC 58 55711457 55711475 GAGATCTGGTTCTCCAGGG 59 NA Rattus norvegicus 81 Foxb1 ENSRNOG00000010547 ENSRNOT00000014014 1 1 1 287 8 75995298 75995316 ATCAGATGGTTCGAGGGTG 59 75994081 75994099 TTAACTGGTTAGGGAGCGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Foxb1 ENSRNOG00000010547 ENSRNOT00000014014 2 1 1 288 8 75995299 75995317 TATCAGATGGTTCGAGGGT 58 75994081 75994099 TTAACTGGTTAGGGAGCGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 2 2 2 80 4 57561513 57561534 GCAAACATGAGGTTACAATCCT 59 57560184 57561475 CTTCATATGGTGTTCCTTGTGG 59 NA Rattus norvegicus 81 Gja3 ENSRNOG00000008847 ENSRNOT00000011699 1 1 1 144 15 37325039 37325057 AGCCTCCTTTACAGAGCAG 59 37301037 37301055 GACTGTAGAGTGCTCCTGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gif ENSRNOG00000021001 ENSRNOT00000028507 3 1 1 82 1 228127111 228127129 TCCATTGCCCAGATTCTCC 60 228127175 228128416 ACTTCATGATCAGGGCCAC 60 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382,ENSRNOT00000082316,ENSRNOT00000084218 3 3 3 86 X 10141627 10144019 CATTCCGCATACAACCAGAC 59 10144065 10144086 TCTTGCATCATTTGGTCATGAG 59 NA Rattus norvegicus 81 Cbln2 ENSRNOG00000013654 ENSRNOT00000018682 2 1 1 82 18 83781113 83781235 ACAGACAAACTATCCAGGTCAG 60 83781277 83781296 CCTGGTAACATCCTGGTCTC 60 NA Rattus norvegicus 81 Zbtb42 ENSRNOG00000037562 ENSRNOT00000030879 3 1 1 211 6 137243241 137243259 GGAAAGCTTGCAGAACGAG 60 137243859 137243879 AGATGGAAGTAGACACTGCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gjb2 ENSRNOG00000008855 ENSRNOT00000011711 2 1 1 197 15 37383148 37383166 CTTCTGACCAACCCAGGAG 60 37379425 37379443 CCGAGGATGCTCTGTAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_X_0719.3 ENSRNOG00000051165 ENSRNOT00000075990 3 1 1 60 X 70946039 70946060 CTACCACTTTCAGAAGTTGGTC 59 70946081 70946099 CTTTCTCTTGAGCTTGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol4 ENSRNOG00000014775 ENSRNOT00000041125 3 1 1 80 18 13892213 13892233 TTTCTAATGAGCTGTTCCGAG 58 13891241 13892173 AGGCTTCCCATTATCTTTGTG 58 NA Rattus norvegicus 81 Cct8l1 ENSRNOG00000050369 ENSRNOT00000073925 1 1 1 60 4 6045402 6045420 AGTGCCACAAGGTTTACAG 58 6045360 6045380 TCCCACTCAAACATTATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716,ENSRNOT00000007887 2 2 2 80 6 72487065 72487086 GGATTTCAAATTGATCTACCGG 58 72487126 72489108 ATAGCCATCTCATTCTCCGT 58 NA Rattus norvegicus 81 Patl1 ENSRNOG00000021052 ENSRNOT00000066247 1 1 1 80 1 228356174 228356667 CAAGCCTGTGCAGTTTGAG 60 228356709 228356729 ACAGCATCTATCATCTTCCGA 59 NA Rattus norvegicus 81 Olr1200 ENSRNOG00000051184 ENSRNOT00000076308 2 1 1 60 8 40345208 40345226 TTAACAGACCAGCCTGACC 59 40345247 40345268 CCATGTAGAAACCGAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npy ENSRNOG00000009768 ENSRNOT00000013145 3 1 1 89 4 79563024 79563042 ATATGGCAAGAGATCCAGC 57 79563095 79564866 TCTTCAAGCCTTGTTCTGG 58 NA Rattus norvegicus 81 Slc12a3 ENSRNOG00000057072 ENSRNOT00000081246 3 1 1 80 19 11140380 11140399 ATGGTGACATCTATCACCGG 59 11140109 11140339 TAGGAAATAGGTACCACCCGA 60 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869,ENSRNOT00000003928 3 3 3 80 13 71991912 71991930 GCTCTCAATACTGCCTGTG 58 71991159 71991871 AAATTCTGCATAGTAGAGGAGG 58 NA Rattus norvegicus 81 Mdp1 ENSRNOG00000019840 ENSRNOT00000026914 1 1 1 89 15 34338682 34338809 TGATCTGGATTACACGCTC 57 34338541 34338561 CTATCTCGTACAGTTCCATCG 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678,ENSRNOT00000047854 2 2 2 80 5 173597166 173597184 TCTACAATGGCAATGCACG 59 173596950 173597123 CTGTGTCAAACCTGAACTGC 60 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 3 3 3 83 5 59497114 59498121 TACTACCAGGAGAGCAATGG 59 59498165 59498185 GATACTTTCAGGCTCTGACTG 58 NA Rattus norvegicus 81 Vom1r56 ENSRNOG00000033061 ENSRNOT00000040738 2 1 1 60 1 66663968 66663988 AACATCATGCTTTCAGGTGAC 59 66664007 66664028 CAAGACTGAACTGCAATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r56 ENSRNOG00000033061 ENSRNOT00000040738 3 1 1 60 1 66663969 66663988 ACATCATGCTTTCAGGTGAC 59 66664007 66664029 CCAAGACTGAACTGCAATATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 2 2 2 80 2 198833647 198833831 GACTTCCAATCCAGAGACC 57 198833585 198833604 CCACACCTCTATTTGTGGAG 58 NA Rattus norvegicus 81 AC117101.1 ENSRNOG00000013292 ENSRNOT00000017738 1 1 1 60 15 28803425 28803446 AAAGTCTGGGAAACTGAAAGTC 59 28803386 28803406 TTTATGTTTGGCCAGCTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 2 2 2 90 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187096 184187115 TATAGTTCTGCACCAGTGCA 59 NA Rattus norvegicus 81 Olr1202 ENSRNOG00000051309 ENSRNOT00000049392 1 1 1 60 8 40411182 40411202 CATGCTGACACTTACTTTCTG 57 40411221 40411242 GAGAACTTCACAGAGATAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rangrf ENSRNOG00000004980 ENSRNOT00000006883 3 1 1 80 10 55560118 55560219 GATGTGAGTGACCTCCGAC 60 55560056 55560077 TTCTATGATCAGACTCTGGTCG 59 NA Rattus norvegicus 81 Lrrc32 ENSRNOG00000015310 ENSRNOT00000020520 3 1 1 81 1 163449699 163453632 GTAGGACGGTGAACAAGGA 59 163453676 163453695 GCTTGGATGTCCAATGAGAG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 2 2 2 80 16 8318694 8318713 ATACGTACCCAGTACCAACC 59 8318755 8320052 CAGATTCTGGCAGAAGTCTG 58 NA Rattus norvegicus 81 Ell2 ENSRNOG00000027089 ENSRNOT00000032974 3 1 1 80 2 2514556 2516232 TCATCTCCTCAGAAACGACC 59 2516273 2516293 TGTCAGGTGAGATATTCGAGC 60 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 3 2 2 80 19 10877648 10877667 TGGAAACCATTCACTGTACC 58 10877092 10877607 ATAGTCGTAGCACATAACCTG 57 NA Rattus norvegicus 81 Tlcd1 ENSRNOG00000012579 ENSRNOT00000016840 2 1 1 80 10 65439985 65440313 TCATCATGTCATGGCTATGG 58 65440354 65440374 AGTAGTGTTAAGACTCCACCT 58 NA Rattus norvegicus 81 Olr1079 ENSRNOG00000049781 ENSRNOT00000073334 3 1 1 60 7 13488983 13489001 TCATCATGGCCATCATCAC 58 13488941 13488962 TTAGCAAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem91 ENSRNOG00000021302 ENSRNOT00000038300 1 1 1 80 1 82467905 82467923 CAGCTTCTTCTCCCACCTC 60 82465284 82467862 GGATGATGTGTCCTCAAGGT 60 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 1 2 2 98 8 49299517 49299535 GAGGAACTGGTACTGGTGG 59 49298213 49298960 TTCGGATGGGCTCATAGTC 59 NA Rattus norvegicus 81 MGC95208 ENSRNOG00000000720 ENSRNOT00000000911 3 1 1 81 11 1818797 1818815 CAATGACGAGATCATGGCC 59 1817430 1818752 TGCACGAATAGCATCTTGG 58 NA Rattus norvegicus 81 Samd11 ENSRNOG00000020342 ENSRNOT00000027564 1 1 1 80 5 173673480 173673500 GTGGACTGTAGATGATGTCTG 58 173673263 173673440 CCTTGTTCTCTGAATACCCTG 58 NA Rattus norvegicus 81 Olr276 ENSRNOG00000055310 ENSRNOT00000087918 2 1 1 60 1 172892194 172892215 ACAAATGACCCAGTCTTTAGAG 58 172892236 172892254 TCACCAGGTAGATGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir345 ENSRNOG00000035618 ENSRNOT00000053741 1 1 1 61 6 132748993 132749011 TAGTCCAGTGCTTGTGGTG 60 132749036 132749054 ATCAAACCCAGGTCTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba1c ENSRNOG00000015544 ENSRNOT00000020932 3 1 1 82 2 199199994 199200013 CTTCTTCAGTGAGACAGGAG 57 199200055 199200207 GAACTTCATCAATAACTGTGGG 58 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 2 2 2 81 11 82647450 82649236 GCAGTTTCACATCATAGTTCTC 58 82647390 82647410 CTCCATGATTCTGTTCTTCCA 58 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 1 2 2 80 12 30795657 30795676 GAAGATGGGAGTTACCTGCA 60 30794517 30795614 CTTCAAGGGCTTCATCAGC 59 NA Rattus norvegicus 81 Mir881 ENSRNOG00000041299 ENSRNOT00000063052 3 1 1 62 X 151283959 151283980 ACAATATTCAGAGTGGTAGCAG 58 151283918 151283939 ACTCTATTCAGAAATGCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 1 2 2 80 15 38217677 38219484 TACGATCCTCACAAAGCCT 58 38217615 38217639 CTCTCAATCATCTCATTACCATCTG 59 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 3 2 2 80 1 209778482 209785728 TTCATTTGTGAAGCTGGAAGC 60 209785770 209785788 AACAGGAAGGTGGGAACAG 60 NA Rattus norvegicus 81 Tap2 ENSRNOG00000000455 ENSRNOT00000000527 2 1 1 83 20 3996988 3998847 TATTCTCTGTTGGGAGCTCC 59 3998892 3998911 GTATGCGAAGGTTGATCCTG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076025,ENSRNOT00000091894 2 2 5 212 8 39437201 39437219 CAGCTCTGACAATGATGGC 59 39404784 39422108 AAAGAGGGTGCCTGTACAC 60 NA DesignRelaxed Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 1 2 2 80 6 102013315 102013336 GAACCAGCATAGATTCTGTACG 59 102013377 102014732 TCTTCAAGGACTGTGCTCG 60 NA Rattus norvegicus 81 Spata6l ENSRNOG00000015137 ENSRNOT00000020464 3 1 1 80 1 247060547 247061240 GAGGCAAACATAAAGGTTGTC 58 247060487 247060505 GCCTGAATTTAGAGGTGGC 59 NA Rattus norvegicus 81 Bri3bp ENSRNOG00000000979 ENSRNOT00000001295 2 1 1 80 12 36579815 36579836 AGTGGATATGTTCTTAGAGACG 57 36576779 36579775 GACAGGTTAGATACGTCGAG 57 NA Rattus norvegicus 81 Bri3bp ENSRNOG00000000979 ENSRNOT00000001295 3 1 1 80 12 36579816 36579838 GGAGTGGATATGTTCTTAGAGAC 58 36576781 36579776 CAGGTTAGATACGTCGAGC 58 NA Rattus norvegicus 81 RGD1307315 ENSRNOG00000013690 ENSRNOT00000018568 2 1 1 80 6 137388350 137388369 CGAAGACGTTTGTTCTTTGG 58 137388411 137389616 GATTCGGAACACAGTCTAGG 58 NA Rattus norvegicus 81 Rhox10 ENSRNOG00000040026 ENSRNOT00000061539 1 1 1 80 X 124207359 124207377 CAGTATCCTGATGCACACC 58 124209420 124211272 TTTAAACCAAGCCTTCACCT 58 NA Rattus norvegicus 81 Sprn ENSRNOG00000018927 ENSRNOT00000025609 1 1 1 60 1 212622187 212622206 GAGGAGTCTACAGCTACTGG 59 212622146 212622164 ATACGTGGACTGTGTACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fundc2 ENSRNOG00000024066 ENSRNOT00000033618 2 1 1 81 18 405936 405954 CAGCTGAAGATCCATAGGG 57 407054 407072 TCTTCTTCACGAACGACAG 58 NA DesignNoJunction Rattus norvegicus 81 Xpnpep3 ENSRNOG00000019196 ENSRNOT00000068666 1 1 1 80 7 122681980 122683824 TTGAACCAGGCATTTATATCCC 59 122683865 122683883 CATCCTCAATCCGAACTCC 58 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487,ENSRNOT00000051883 2 2 2 80 1 123907414 123908494 CCCTTGATAGCACAATACTTCG 59 123907355 123907376 ATATCTCAGCACAATCACTGTC 58 NA Rattus norvegicus 81 AC115420.2 ENSRNOG00000047447 ENSRNOT00000071027 2 1 1 61 4 157374859 157374877 AAACCGAAGTGAGACGGAG 60 157374902 157374920 TACCCACACTAGACCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhlrc4 ENSRNOG00000039279 ENSRNOT00000060150 2 1 1 61 10 15306323 15306341 CACAGCTTTGGTCATCCAG 59 15306280 15306299 TCAGCCACAATAATGCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa1a ENSRNOG00000045654 ENSRNOT00000049667 1 1 1 60 20 2700132 2700150 CAAGGCCAACAAGATCACC 59 2700090 2700108 CTCGATCTCCTCCTTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 1 3 3 80 17 6189449 6203240 AGATTCCCAATTGTGGTCTG 58 6189388 6189406 AAATGGTCACAGACTTCCC 57 NA Rattus norvegicus 81 Fermt3 ENSRNOG00000021161 ENSRNOT00000028737 3 1 1 80 1 222271639 222271657 GTCTGTCACACTCCGAGTC 60 222268195 222271595 TGCTTGCGATTGATCTCCT 60 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907,ENSRNOT00000088674 2 2 2 80 14 44657491 44657509 TGCCAGTGTCTTGTAAACC 58 44657552 44665283 AGTCATCGTCTTCATCTGTC 57 NA Rattus norvegicus 81 Rn60_X_0750.3 ENSRNOG00000051231 ENSRNOT00000075856 1 1 1 60 X 74163449 74163468 TGAATCATTTGCCACTTGGT 58 74163485 74163509 CATGGGAAGTCTATTGTTATTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr3b ENSRNOG00000031855 ENSRNOT00000041876 1 1 1 80 4 5671245 5671862 GCAGGATAAAGCCTAAGCC 58 5671906 5671924 TAGAGCCTCCAAACCAGAC 59 NA Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 3 2 2 83 7 122955907 122957473 CCAGCTCTGATCTCACTAGG 59 122955843 122955861 TCCAAATGCGTTGTCACTG 59 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 1 2 2 80 2 256911069 256911087 TGAGAATGAAGGCTTGCAC 59 256906229 256911029 CTGAAATCGAACTGGTATCTGTC 59 NA Rattus norvegicus 81 Sp1 ENSRNOG00000014084 ENSRNOT00000019403 2 1 1 80 7 144038718 144039007 CATAAACGTACACATACAGGAGAG 59 144039046 144039064 TGACAGATGATCGCTCCTC 59 NA Rattus norvegicus 81 Slc25a46 ENSRNOG00000017091 ENSRNOT00000023032 1 1 1 80 18 24371278 24381690 ATCGAAACAGTACAGAGTGAG 58 24371218 24371236 TATCACCCGTCCAATTCCT 58 NA Rattus norvegicus 81 Olr1607 ENSRNOG00000006746 ENSRNOT00000008805 3 1 1 60 15 12363629 12363648 GTAGGCAAAGGGATCATCTC 58 12363668 12363689 AGCCCATGTATAGAAAGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq9 ENSRNOG00000016190 ENSRNOT00000021716 1 1 1 80 19 10585135 10585476 CTAAGCAGGTGAAGTCCAC 58 10584628 10584646 GACCTGTCAGGTTCTTGAG 58 NA Rattus norvegicus 81 LOC103692768 ENSRNOG00000056595 ENSRNOT00000084203 3 1 1 60 7 6803295 6803314 AGAACAACACGATAACCACC 58 6803254 6803275 ATCTGAAGTTGAGGATCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stc2 ENSRNOG00000020729 ENSRNOT00000028146 1 1 1 80 10 16545007 16545025 AATCCAGGGCTTACATGGG 60 16545068 16547219 TTGATGAATGACTTGCCCTG 59 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 2 2 2 81 5 166915701 166923311 TGAACGGACTTGATCCTGAG 60 166915639 166915657 AGACGTTCCTTTCCTAGCG 60 NA Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 2 2 2 80 X 153574278 153582940 AAACGTAAGCACAAGCCAG 59 153574216 153574236 CAGGCAGATAGTAGTGTCCTC 60 NA Rattus norvegicus 81 Zfp281 ENSRNOG00000058643 ENSRNOT00000088133 2 1 1 146 13 53507251 53507271 CTCAACGAAATCGGTAGCG 59 53531520 53531542 GTTGAACATAACCATACTCTGGG 59 NA InUTR Rattus norvegicus 81 Gfral ENSRNOG00000032063 ENSRNOT00000052341 3 1 1 81 8 83258277 83261577 GATGAATTATGCAGGACATACTACC 60 83258220 83258240 TCTCATCTTCACGACACTTCC 60 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334,ENSRNOT00000084236 3 2 2 80 12 36930868 36931558 AAGTGAACGGTCTCAGGAG 59 36931602 36931620 AATTCTATGTCGGGCTTGC 58 NA Rattus norvegicus 81 RGD1564688 ENSRNOG00000038610 ENSRNOT00000058917 1 1 1 60 11 72109814 72109835 ATGTTCCAGTATGACTCTACCC 59 72109775 72109793 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564688 ENSRNOG00000038610 ENSRNOT00000058917 3 1 1 60 11 72109810 72109828 AGTATGACTCTACCCACGG 58 72109768 72109786 ACGAGCTTCCCATTCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000050297 2 1 2 60 6 139293540 139293559 CAAATGGACAGTCTGAGGTC 58 139293581 139293894 AATTTGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Srbd1 ENSRNOG00000014720 ENSRNOT00000019894 3 1 1 80 6 9361317 9361335 TATCTACAGTGTCAGCCCT 57 9353530 9361273 CTTGCTATGGAAACTGCAC 57 NA Rattus norvegicus 81 Yars2 ENSRNOG00000025252 ENSRNOT00000034902 3 1 1 81 11 88885388 88886817 TGTAGAAAGGTACCTGAAGC 57 88885326 88885345 TGGTTCTTTGACATGTAGCT 57 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000077409 3 1 2 92 1 216661987 216662551 AATGCGAACGACTTCTTCG 59 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000078944 2 1 2 91 1 216661985 216662514 TCATCTCTGACTTCTTCGCC 60 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000079879,ENSRNOT00000078885 3 4 4 84 8 117880997 117887825 CTTCATAAGGGTGCTGTGAC 59 117880932 117880950 CAATGTGCATCTCAGGGAG 58 NA Rattus norvegicus 81 Abcb10 ENSRNOG00000017993 ENSRNOT00000024232 1 1 1 80 19 56750335 56752300 CCAGTTCTGGAACAGTCAG 58 56750273 56750292 CTGTCCCAATCTTGGATCTC 58 NA Rattus norvegicus 81 Gpr132 ENSRNOG00000013914 ENSRNOT00000018613 3 1 1 88 6 137654433 137658393 AATGCAACAGGAAATGCCA 59 137654363 137654381 CTCTCCTCGTAGGACAACG 59 NA Rattus norvegicus 81 Fndc3b ENSRNOG00000024089 ENSRNOT00000034096 3 1 1 80 2 113229611 113229629 GGGATCAAGAAGACAGAGC 58 113197997 113229570 TACTTCCAACTCATACTCTTGC 58 NA Rattus norvegicus 81 LOC691895 ENSRNOG00000045864 ENSRNOT00000046759 1 1 1 60 X 34162789 34162811 CACAAGTACGACAGAACTATGAC 59 34162751 34162770 AGACGGATATGGGTGTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Catsper4 ENSRNOG00000016312 ENSRNOT00000021919 1 1 1 80 5 152441791 152441812 GTGTTGACAATCCTTATCTGTG 58 152437597 152441751 GATATTCCAGCCATCCTTCC 58 NA Rattus norvegicus 81 Btf3l4 ENSRNOG00000008512 ENSRNOT00000011272 3 1 1 80 5 128434922 128434941 ATACTAAGTCAGCTTGGTGC 58 128433864 128434881 ACTATCCAATACTTGTCGTGG 58 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477,ENSRNOT00000081601 3 2 2 80 14 66841690 66854512 TGCCATTTACAGTGTGGAG 58 66841628 66841646 AGGGAAAGACTCGAATCCA 58 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000003734 ENSRNOT00000004958 2 1 1 81 X 134540236 134540257 GCCATCAGATTTGCAAATTCAG 59 134540298 134541503 GACGAAAGCATCACCTTCTC 59 NA Rattus norvegicus 81 Arhgef39 ENSRNOG00000021433 ENSRNOT00000031336 3 1 1 80 5 58999024 58999253 GGTTTGCTCAGTCTGTCCT 60 58998962 58998980 GTGGTACCATTGTGACAGC 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000092095 3 1 2 87 7 118906349 118906367 CTAGAGAACCTGCAGCTCC 60 118906417 118943169 CATCTTCCTCTTCCCTGGAC 60 NA Rattus norvegicus 81 Prom2 ENSRNOG00000014710 ENSRNOT00000020354 1 1 1 80 3 120096081 120096100 ACCTTCTTGACATAGTCGCC 60 120095850 120096038 AACACTCAGTGGCATTCCT 59 NA Rattus norvegicus 81 Olr1059 ENSRNOG00000032290 ENSRNOT00000044356 2 1 1 60 7 16363718 16363742 CTTCATAATCATCCTTCTTACCCTG 59 16363754 16363778 GAAGAAATACATAGGAGTCTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elp2 ENSRNOG00000015301 ENSRNOT00000020601 3 1 1 80 18 16554321 16554705 GGTCTGAAGTGAAATGCCT 58 16554749 16554767 TATCAGGCAAAGTGGACAG 57 NA Rattus norvegicus 81 Eif3g ENSRNOG00000020619 ENSRNOT00000027985 1 1 1 80 8 21915079 21915206 AGTTACTTCCTGGAGACCC 58 21915017 21915036 CTACCTTGTACTCAGTCACC 57 NA Rattus norvegicus 81 LOC100912356 ENSRNOG00000059274 ENSRNOT00000058358 1 1 1 60 5 107388046 107388064 TCCTGGCACAAATGAAGAG 58 107388004 107388022 CCAAAGTCCTGTCTGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epx ENSRNOG00000008707 ENSRNOT00000011735 3 1 1 80 10 75161598 75162126 ACGGAGACAGATTCTGGTG 59 75161536 75161558 GAGATAAAGAAATTCGCCTCAGG 60 NA Rattus norvegicus 81 Moxd1 ENSRNOG00000015321 ENSRNOT00000061234 2 1 1 80 1 22178194 22178212 CAAAGGCACGACATACTGG 59 22150883 22178151 ATTGGCTCCACCTTTATCAC 58 NA Rattus norvegicus 81 Olr1075 ENSRNOG00000039449 ENSRNOT00000060456 1 1 1 60 7 13404620 13404638 TCACTTCTACCACTGTCCC 58 13404578 13404596 GTGATGACCTTGCTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912282 ENSRNOG00000015447 ENSRNOT00000021523 1 1 1 80 7 145444307 145444327 GGAGTTAGAGGATGACATCCA 59 145442500 145444266 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Plekhh3 ENSRNOG00000020238 ENSRNOT00000027452 2 1 1 81 10 89081179 89081305 CTCAGGGACATACAGGAGAG 59 89081117 89081135 TGGTGTGCCTCAGAATAGG 59 NA Rattus norvegicus 81 Fam184b ENSRNOG00000003704 ENSRNOT00000004923 1 1 1 80 14 70047783 70064475 TAAACTACAAACACAGGCTGC 59 70064517 70064535 CTGAGCTCTAGCAGGTGTG 60 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 2 2 2 88 7 12877158 12877176 TGATCTGCAAGTCTGAGGC 60 12876767 12877107 GTTGGAGATAGTCTGGTCCC 59 NA Rattus norvegicus 81 LOC498063 ENSRNOG00000001986 ENSRNOT00000002718 1 1 1 60 11 32469535 32469554 GCTTCACCAACTGTCTTCTG 59 32469494 32469513 CTCTTGGTGCTGTCAAACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49i3 ENSRNOG00000046046 ENSRNOT00000050861 2 1 1 80 4 162644465 162644484 TGCATTGGTTATGCTATGGT 58 162644401 162644425 TCTGGCAGGTTATACATTTACG 58 NA Rattus norvegicus 81 RGD1310641 ENSRNOG00000009061 ENSRNOT00000051243 1 1 1 80 5 50180144 50180165 ACTGTTAATTCAGTACCGTGGA 60 50178812 50180104 ATCGTTGGATTTCCTGGGAG 60 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 2 2 2 80 16 47891486 47893208 CTCTGTAACCATGACGCTG 58 47893249 47893270 TCCATAGAAGTCAAGAACACCT 59 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646,ENSRNOT00000082042 3 2 2 131 17 10061643 10061662 CTTACAAGAGCTCCGAGGAG 60 10052740 10061549 TCATGTGCTCCACTTCCTC 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000077380,ENSRNOT00000001373 1 2 2 80 12 37446431 37446548 TGGAGTACTCCGACTACTC 57 37446591 37446610 TTGACAGGGATATTCTGCTC 57 NA Rattus norvegicus 81 Prr7 ENSRNOG00000021447 ENSRNOT00000036162 3 1 1 85 17 9694608 9694626 TCTACCGCAAGATCGTCAC 60 9694541 9694559 GAGAGGCTTGTAACTCGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 2 2 4 80 4 163845295 163845313 GATGTAAACAGACCTGCCA 58 163838420 163845251 GGAACCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000027771 3 1 2 86 18 25956630 25956648 CACCTGAGATTCTCCGAGG 59 25956695 25960921 ATCCACAAAGTAGGATGTAGGT 59 NA Rattus norvegicus 81 Klf9 ENSRNOG00000014215 ENSRNOT00000019367 2 1 1 150 1 240909486 240931712 GAGTGCATACAGGTGAACG 59 240931823 240931844 CTCCTCATGAATCTCTTCTCAC 58 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000085811 3 1 2 80 1 264509111 264537889 GTCTCATCCATCAACAGTTCC 59 264537931 264537949 ATGGAGTAGGATCCCACTG 58 NA InUTR Rattus norvegicus 81 Ptk7 ENSRNOG00000039976 ENSRNOT00000061432 3 1 1 80 9 16716512 16716531 CCCAAGCCTCTTATTCAGTG 58 16716574 16716690 CTGGAAGATGTGCATCCTG 58 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006,ENSRNOT00000046611 1 2 2 80 1 87201459 87202102 CAACTATGAAGAATACTGTGTCCC 59 87201402 87201422 TCAACATCATAGTACCAGCGA 59 NA Rattus norvegicus 81 Mest ENSRNOG00000048088 ENSRNOT00000072698 2 1 1 80 4 58055591 58055610 AGGACTACGCATCTTCTACC 59 58056462 58056970 GTCGGAAAGCCATGTAACAG 59 NA Rattus norvegicus 81 Mest ENSRNOG00000048088 ENSRNOT00000072698 3 1 1 80 4 58057610 58057628 AGAACCGCAGAATCAACCT 59 58057669 58057841 GATTCTGCTTGTACCTGTACAG 59 NA Rattus norvegicus 81 Tst ENSRNOG00000000186 ENSRNOT00000050511 1 1 1 80 7 119616781 119622456 GATGCAGTAGGACTGGACTC 60 119616720 119616739 GAAGCCATCTTCTGTCAGGA 60 NA Rattus norvegicus 81 Olr1538 ENSRNOG00000039704 ENSRNOT00000050197 1 1 1 60 11 43281534 43281552 CCCTGTTCCTACTGTTCCT 58 43281576 43281594 ATCAGTCCGAGATTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 1 3 3 80 3 118184477 118184496 GTATCGACAAGACCCAACCT 60 118184536 118188308 GAGTAAGACCAAAGTGTTCCTG 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539,ENSRNOT00000079975 2 3 3 67 4 164451265 164451283 CCTGAGGAGACTCAAAGGC 60 164449587 164449606 ATAGCAATCACAGTGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910837 ENSRNOG00000050235 ENSRNOT00000071834 2 1 1 60 10 44376134 44376153 GGACACCTTTCTCTTCACAG 58 44376093 44376111 GATGTTGCCTATGAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529,ENSRNOT00000064255 2 2 2 80 16 8793567 8793588 CTGTTTACTCTGACTAGTCCTG 58 8793625 8793726 CTGAATATTAGATCCGGTTCCTG 59 NA Rattus norvegicus 81 Ube2l3 ENSRNOG00000001862 ENSRNOT00000046159 2 1 1 80 11 88067349 88083071 CTTATTGTTCCTGACAACCCT 58 88083112 88083131 CTTGAAGGGATACTCTGCTG 58 NA InUTR Rattus norvegicus 81 AABR07065593.2 ENSRNOG00000058841 ENSRNOT00000085594 3 1 1 61 6 136183879 136185540 GTGCTTGTGAAACTGAACAC 58 136183837 136183858 CCTACTAATAGAAGGGTGTTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tysnd1 ENSRNOG00000024839 ENSRNOT00000036719 2 1 1 87 20 31317028 31317046 ATGCTACAGACCACCTGTG 59 31317097 31317976 CAACAATGCCCAAGAGGTC 59 NA Rattus norvegicus 81 Olr1234 ENSRNOG00000057471 ENSRNOT00000082919 3 1 1 60 4 1460055 1460073 GTCATCAGGTAAGGGTTGG 58 1460095 1460115 GACAGTTATGATGTGAGACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cgref1 ENSRNOG00000007923 ENSRNOT00000010586 2 1 1 80 6 26807640 26807659 TCTGCGGGATTATCTCAAGG 59 26807700 26808001 AGATATAGCAGGACTTGCTCC 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 2 2 3 80 17 9838225 9838351 AATTGTCTGTTATGACCTCACC 59 9838392 9838410 TCTTCTAAACTGCGGAGCT 59 NA Rattus norvegicus 81 Capn9 ENSRNOG00000018480 ENSRNOT00000025357 2 1 1 80 19 57356118 57356140 CAGAGGATTTCTACGAGATTCTG 59 57356178 57357315 AGGCATTCAGGGTATCTATGG 59 NA Rattus norvegicus 81 Gtse1 ENSRNOG00000016148 ENSRNOT00000022012 3 1 1 80 7 126744066 126744084 CTAGGCTGCAAGACAGAGG 60 126744127 126748122 ATCAGGTGACTCACCAACAG 60 NA Rattus norvegicus 81 Mir30c2 ENSRNOG00000035562 ENSRNOT00000053685 1 1 1 60 9 29562387 29562408 ACTGTAAACATCCTACACTCTC 57 29562429 29562447 GTAAACAGCCTTCTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrvi1 ENSRNOG00000017767 ENSRNOT00000024060 2 1 1 80 1 175689916 175691074 GCCTACAACAAAGGATACCA 58 175689855 175689874 CTTCTGTTCCTCTTCCTCCT 59 NA Rattus norvegicus 81 AABR07062219.1 ENSRNOG00000057069 ENSRNOT00000088908 2 1 1 80 4 165356831 165356851 GCATGGATGTAAACGGATCTG 60 165353390 165356792 TGAAGGAACTTCCTTTCATCCT 60 NA Rattus norvegicus 81 Ctbs ENSRNOG00000015573 ENSRNOT00000020972 3 1 1 80 2 252316500 252319691 CGTACTATAATTACAAGGATCCCAC 59 252319728 252319747 CTGCCTTTAGTGAGATGCTC 59 NA Rattus norvegicus 81 Suclg1 ENSRNOG00000005587 ENSRNOT00000007624 2 1 1 80 4 101202706 101203951 TCCTTGTGTATTGGCATTGG 59 101203994 101204012 TGGATCCTTCAGGAAGACG 59 NA Rattus norvegicus 81 Ogfod2 ENSRNOG00000001081 ENSRNOT00000001433 2 1 1 90 12 37909548 37909937 AACTCTTGGAGGAGCTTGAG 60 37909477 37909495 TAAGAGCTGGCGATGACAG 60 NA Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 1 2 2 80 5 168021539 168021557 GCCCTCCAAGTACCTACTC 59 168021599 168023358 TGAACCTGAAATAGCCTTGAC 58 NA Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 2 2 2 80 5 168021540 168021558 CCCTCCAAGTACCTACTCC 58 168021599 168023359 TTGAACCTGAAATAGCCTTGAC 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940,ENSRNOT00000079571,ENSRNOT00000067954 1 3 3 90 4 27524809 27524828 GAGTCTCAGATGGTGTTCTC 58 27524881 27537813 GTCCTTCATATGGCTCTCG 58 NA Rattus norvegicus 81 Dnajb7 ENSRNOG00000019187 ENSRNOT00000025941 1 1 1 60 7 122643167 122643190 CCTATACCCATTCAAGTACAACTC 59 122643130 122643149 GGTGTTCCTTGTTCCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 3 2 2 82 5 146661938 146667894 AGTACCAAGCCTACGAACTC 59 146667939 146667957 AACATTATAGCCGGCTCCC 60 NA Rattus norvegicus 81 Cep83 ENSRNOG00000007859 ENSRNOT00000034639 1 1 1 80 7 35846144 35846163 GTCAATCCTGCTAACTTCCA 58 35846205 35846991 CTGTTCTTCCTGCAGATGAG 58 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000079824,ENSRNOT00000088795 1 3 3 80 6 103418033 103418055 CCCAGATTGAGAACATTGAAGAG 60 103413898 103417993 AACGCTCACCTGAGATGAC 60 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000045150 2 1 2 80 18 17496904 17549976 ACAGGAACAGCAGATAACC 57 17550019 17550038 GCTACACTCAGATAGGAACC 57 NA Rattus norvegicus 81 AC094643.2 ENSRNOG00000053040 ENSRNOT00000079128 1 1 1 60 7 11181618 11181636 GTACCCAGCTGGATACTCC 59 11181658 11181678 TGACTGCATAAGATCTGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000077024 3 1 3 80 X 71168670 71168918 CCAAATCTGATCTCTTGCTGAC 60 71168611 71168629 AGCATTGAACCTCTGGGAG 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027518 3 2 3 85 10 15453767 15454362 GTCTGCGGAGATTAGGAGG 59 15453700 15453719 TTCTGTCTTGGTTCCGAGTC 60 NA Rattus norvegicus 81 Rasl10b ENSRNOG00000010302 ENSRNOT00000013687 2 1 1 145 10 70629261 70629279 AGTCCATCTCCAGAGTCCT 59 70629387 70630117 CCACCTAGACACGTTTAAGC 59 NA InUTR Rattus norvegicus 81 Cenpv ENSRNOG00000003086 ENSRNOT00000004127 1 1 1 80 10 48858935 48858953 CCTGGGAGAGCTTTCAGTC 60 48858155 48858269 CCTGGTACTCAAATAAATCGAGG 59 NA Rattus norvegicus 81 LOC102547932 ENSRNOG00000009302 ENSRNOT00000012321 1 1 1 60 7 116980908 116980926 AGCTCCTTACTCATTCGCC 60 116980945 116980968 CATTACACTCATAGGGTCTTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547932 ENSRNOG00000009302 ENSRNOT00000012321 3 1 1 60 7 116981293 116981313 ACGAGTGTAATGAATGTGGGA 60 116981330 116981353 TTCTGGTGTCGTATAAGGTATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1 ENSRNOG00000009402 ENSRNOT00000013378 2 1 1 80 3 21736921 21745403 CTGAAGCAGATAAAGCAGAAGG 60 21745441 21745462 CTCTGACTCACTTTCCAAACAC 60 NA Rattus norvegicus 81 Rps23 ENSRNOG00000016580 ENSRNOT00000022348 2 1 1 80 2 19823268 19823689 GCAAGATGGGTAAGTGTCG 59 19823731 19823751 GTTTATCATGCCACTTCTGGT 59 NA InUTR Rattus norvegicus 81 Rn60_10_0702.2 ENSRNOG00000021357 ENSRNOT00000055955 1 1 1 60 10 70472793 70472813 ACAGTGAAGTTCCTCAAATCC 58 70472831 70472853 AACTCAGTCTGGAATCTGATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d30 ENSRNOG00000023951 ENSRNOT00000024679 3 1 1 80 7 63398648 63398666 TGTCAAGGCTTCAACATCC 58 63393536 63398605 AATCATAATCTTCAGCGCGT 58 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 2 2 2 80 9 16869174 16869193 TTCCGAGTTCCATCTCTTCC 59 16869236 16871955 ACCGACATGATCAACTGGT 59 NA Rattus norvegicus 81 Got1 ENSRNOG00000016356 ENSRNOT00000022309 3 1 1 81 1 263253557 263253575 TAGGGCGATGGTACAATGG 59 263253053 263253512 ACGCCATTATGGTTCTCCC 60 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423,ENSRNOT00000011070 2 2 2 80 7 130255432 130256162 AGAGAAAGCCTTTGGTCCT 59 130256206 130256224 CTGTCAGAGGCTACCAGTG 60 NA Rattus norvegicus 81 Blvrb ENSRNOG00000024410 ENSRNOT00000031026 1 1 1 80 1 84268714 84268875 CGACCTCAGTCCTACTACAG 59 84268918 84268936 ACCTTGTCCACTCCATGTG 60 NA Rattus norvegicus 81 Cldn17 ENSRNOG00000027691 ENSRNOT00000032663 1 1 1 60 11 28477809 28477829 CTTCGTTCTGATTCCAGTGTC 59 28477769 28477787 TGGGTCGTAGAAATCTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim34 ENSRNOG00000042686 ENSRNOT00000055210 1 1 1 80 1 169439022 169439040 GTGGAGGAACTCATCTCGG 60 169439082 169440815 CAAGATACCGCTTACATCCTG 59 NA Rattus norvegicus 81 Vom2r15 ENSRNOG00000029458 ENSRNOT00000042466 1 1 1 80 1 62668493 62676246 AAGGTTCACAGATGCTGAC 58 62668431 62668449 CTGGCATTCCATTCTTCCT 58 NA Rattus norvegicus 81 Mirlet7c-2 ENSRNOG00000035461 ENSRNOT00000053584 2 1 1 61 7 126590224 126590244 GTGAGGTAGTAGGTTGTATGG 57 126590262 126590285 GTAGATTGTATAGTTACCGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7c-2 ENSRNOG00000035461 ENSRNOT00000053584 3 1 1 61 7 126590224 126590245 GTGAGGTAGTAGGTTGTATGGT 59 126590262 126590285 GTAGATTGTATAGTTACCGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 3 2 2 80 10 109969456 109969559 TGTCATCAAGGTCAGTGTC 57 109969602 109969621 ATCTCTGGAGTAGACTCAGC 58 NA Rattus norvegicus 81 Fcgbp ENSRNOG00000019129 ENSRNOT00000057122 2 1 1 82 1 85032722 85034116 AAAGTCCGGGTCAATGGAG 60 85034159 85034180 TTTGAGCCTCCATTAATCACTG 59 NA Rattus norvegicus 81 Kynu ENSRNOG00000029993 ENSRNOT00000043533 2 1 1 80 3 28424206 28424228 GGATGAGGAAGATAAACTGAAGC 59 28424265 28452162 GATAGATCAATTGAAGGCAGGT 58 NA Rattus norvegicus 81 Lum ENSRNOG00000004610 ENSRNOT00000006109 3 1 1 87 7 38820073 38822443 GAGAGTAAGGGCACAGAGG 59 38822494 38822512 ATTGGCCACTGACACTACC 60 NA InUTR Rattus norvegicus 81 AABR07014016.1 ENSRNOG00000050954 ENSRNOT00000073973 2 1 1 80 14 184824 186241 AGGAGAAACATTGGTTCCCT 59 184763 184782 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 1 2 2 82 7 12607671 12608825 ACTACATCCAGCAGGTCTC 59 12607607 12607625 GAACACAGTCACGTACCAG 58 NA Rattus norvegicus 81 Atg9a ENSRNOG00000018975 ENSRNOT00000025740 1 1 1 80 9 82387943 82387961 AAGATGTGTTGGCTGTGGA 60 82387801 82387899 GGATGAAAGACCTGCACAC 59 NA Rattus norvegicus 81 Mib2 ENSRNOG00000017564 ENSRNOT00000023696 1 1 1 80 5 173084875 173084893 ACTGCTACCAATAGCCAGG 59 173084690 173084836 CAGAATCTTTCTAACTGCTAGCAC 60 NA Rattus norvegicus 81 Kif20a ENSRNOG00000024428 ENSRNOT00000033784 2 1 1 80 18 27426809 27426830 CTTTGCCTTGAAGAGTAATGAG 58 27426870 27427428 ACTTCTGGCCCAAATATCTG 58 NA Rattus norvegicus 81 Tbx15 ENSRNOG00000019565 ENSRNOT00000067358 1 1 1 80 2 201352673 201352691 GGATGAGACAGGTGGTCAG 60 201352734 201353747 AGTGCAGAATGATGTGTCCT 60 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596,ENSRNOT00000005479 1 3 3 80 10 11081978 11082002 GATGATTATTACCAGATACTGGGAG 59 11080345 11081942 CTTGGCAAGCTGATAATAGGC 60 NA Rattus norvegicus 81 F8 ENSRNOG00000031197 ENSRNOT00000045926 1 1 1 80 18 372788 373564 GGATCAAGGTGGATCTCCT 58 372726 372744 AAAGGCTGGAAAGTCTGTG 58 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 2 2 2 80 4 62280607 62281670 GGGACACCAAATAAGGAAACTG 60 62281711 62281729 GTCCGGCGATTTAGTTAGC 59 NA Rattus norvegicus 81 Pcnxl2 ENSRNOG00000028580 ENSRNOT00000030077 1 1 1 80 19 58724096 58725571 CCTCAAAGGTGTCGTTCTG 59 58724034 58724053 AGACTTTCTGACTTCATGCC 58 NA Rattus norvegicus 81 Olr192 ENSRNOG00000017366 ENSRNOT00000023325 2 1 1 80 1 170000217 170005095 GACTAAGGTACTGCGTCCA 59 169991052 169991071 TGTCATCACAGGAGAGTCTG 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 3 2 2 80 8 116443729 116443748 CATGTTAGAGGAGGTGGAGG 59 116442988 116443175 TACAGTTGTTGCCTCTTGGA 59 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385,ENSRNOT00000067528 2 2 2 80 10 55536477 55536495 TCCTAAGCCAGACAGAGGA 59 55536317 55536435 GCTCAATGATCTTGCTCACAG 60 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080091 3 1 7 65 20 4087727 4087746 CTGTTGCTAACAGTGCTGAG 59 4087774 4089341 GAAATCACTCATCCGCGTG 59 NA DesignRelaxed Rattus norvegicus 81 Fbxo2 ENSRNOG00000009409 ENSRNOT00000012670 2 1 1 81 5 164977160 164977178 GGAGCATGAAGATGTGCTG 59 164977223 164977441 GTGGGAGATCTCCATCCAG 59 NA Rattus norvegicus 81 Srf ENSRNOG00000018232 ENSRNOT00000061430 3 1 1 81 9 16738461 16740353 CATGAAGAAGGCTTATGAGCTG 60 16740394 16740413 ATACACATGGCCTGTCTCAC 60 NA Rattus norvegicus 81 LOC100911247 ENSRNOG00000025487 ENSRNOT00000038294 2 1 1 60 7 60987601 60987619 GCAAGCAGACCTTCTACCT 59 60987559 60987578 GAGAAACGATCCCTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Palm ENSRNOG00000009760 ENSRNOT00000013762 2 1 1 80 7 12720609 12720627 AGCAGGCAGAGATTGAGAG 59 12720169 12720565 GAAGTGCCTTGGACTTCAG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000085873 1 1 18 80 1 43508705 43508723 AGTCCGTCAGAACACTAGG 59 43508765 43510405 GTTTCAAATTGCTTGCTCTGG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000091832 1 1 18 80 1 43508704 43508723 GAGTCCGTCAGAACACTAGG 60 43508765 43509785 CTCATAACTCTGCTCCCTGG 60 NA Rattus norvegicus 81 LOC100910531 ENSRNOG00000026277 ENSRNOT00000024322 1 1 1 80 3 121547913 121548558 CAAGCAAGGAAGAAGACGA 58 121548600 121548620 TCAGTATTGACTTGACACCAC 58 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 1 3 3 80 7 12665244 12665342 AGTTCTTCCAGAAGGACCG 59 12665182 12665200 GCAGCTCAATTAGTGCCTG 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 2 3 3 80 7 12665248 12665348 GCTTCAAGTTCTTCCAGAAGG 59 12665188 12665206 CAATTAGTGCCTGCACTGC 60 NA Rattus norvegicus 81 Meox1 ENSRNOG00000020803 ENSRNOT00000028220 1 1 1 80 10 89799888 89816038 GAGAGGTCAGACAACCCAG 59 89799826 89799844 GGTGAAAGCTGTCCTTTCC 59 NA Rattus norvegicus 81 Fbn1 ENSRNOG00000007302 ENSRNOT00000056022 3 1 1 80 3 117765172 117765191 GAGCCTAAAGGAGACCAGAG 59 117738979 117765130 CAGACATTGGGTCCTTTCAG 59 NA Rattus norvegicus 81 LOC100362333 ENSRNOG00000004843 ENSRNOT00000006416 1 1 1 60 7 118816301 118816319 AAAGATTGCGAAGAGCAGG 59 118816259 118816281 CCAGTCTTTCTTCATCTTCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37b ENSRNOG00000001086 ENSRNOT00000001445 3 1 1 89 12 38020314 38020333 AACAATCTAACAGCGCTTCC 59 38020385 38021265 CTGCCATGTTCTCAGTGTC 59 NA Rattus norvegicus 81 Bmper ENSRNOG00000015357 ENSRNOT00000033460 1 1 1 80 8 24511529 24511550 GTTTCGCAGTGATGTTTATGAC 59 24511589 24513448 ATTGTAGAGTCCTTGCAAGTG 58 NA Rattus norvegicus 81 RGD1565367 ENSRNOG00000026919 ENSRNOT00000038950 1 1 1 80 4 62482688 62482707 GCTTCTCAATCTTCTGTGGG 59 62482535 62482645 GCTGGAGAATTCCTGTCTG 58 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000071180 2 1 2 94 1 90959135 90959153 CAAAGTGTCTGACCTCAGC 59 90958845 90959077 CTTCATGAGGCATGATGCC 59 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491,ENSRNOT00000078392 2 2 2 80 X 15043050 15043166 TGTGGAACATGTCCTCAGG 59 15043209 15043228 GAACAGTCTGGAAGACAACG 59 NA Rattus norvegicus 81 Tmem120b ENSRNOG00000048050 ENSRNOT00000074517 1 1 1 81 12 38916163 38916181 GACACAGTGCAGCATTTCC 60 38914545 38916118 ATGGCACTTGTACCTCTGG 59 NA Rattus norvegicus 81 Isca1 ENSRNOG00000018343 ENSRNOT00000024781 1 1 1 80 17 5290842 5292840 TATTCAAGACGGAGTCCGAG 59 5292880 5292901 TCTTCCACATAGTCCATCTCTG 59 NA Rattus norvegicus 81 AABR07009931.1 ENSRNOG00000011640 ENSRNOT00000015479 3 1 1 60 2 117666432 117666452 CCCATTCCTGATGAATTCGAG 59 117666392 117666411 ATATTCCAAGTCCTGCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp4f6 ENSRNOG00000048450 ENSRNOT00000060210 1 1 1 80 7 14590488 14596456 GAGATTGAATGGATGCCGTG 60 14596499 14596517 CAGCAGAAGATGCCATGTC 59 NA Rattus norvegicus 81 Ifnk ENSRNOG00000022990 ENSRNOT00000034527 3 1 1 89 5 50631722 50631740 CCTGGAAGATTGTCGTGGT 60 50631791 50633851 GCTTGAAGCTGGATGATTCTC 60 NA InUTR Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695,ENSRNOT00000084765 3 2 2 80 11 7265983 7300224 TCTTACTGGAGAATTCAGTGG 57 7300266 7300284 ATGTACAGCTCCCATTTCC 57 NA Rattus norvegicus 81 Fkbp1b ENSRNOG00000047143 ENSRNOT00000071784 2 1 1 80 6 29981936 29985517 CACTACACAGGGATGCTCC 60 29985559 29985579 GCCAATTCTGAACTTGAAGGG 60 NA Rattus norvegicus 81 RGD1562399 ENSRNOG00000032289 ENSRNOT00000058491 3 1 1 60 9 66046671 66046689 CCACCTTTGATGCCATCTC 59 66046713 66046731 GTCTCTTTCCAGAGGTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 1 2 2 80 4 2056432 2060035 CACCGTTAACTTTAGCCCA 58 2060077 2060097 TCACTTTCTCCCATTCATCTG 58 NA Rattus norvegicus 81 Dld ENSRNOG00000006364 ENSRNOT00000008980 3 1 1 80 6 50612464 50612483 TGACAGTGATAGGTTCTGGT 58 50611118 50612423 CAATGCAGACTGTCTTAAAGC 58 NA Rattus norvegicus 81 Mylip ENSRNOG00000017579 ENSRNOT00000024021 3 1 1 80 17 19688816 19688834 ACAGAAACTCCTCATTGGG 57 19688065 19688775 TAAGCTATCCTGTTAATAGGGC 57 NA Rattus norvegicus 81 Etf1 ENSRNOG00000019450 ENSRNOT00000026398 2 1 1 80 18 27704171 27704451 CAAAGAAACACGGCAGAGG 60 27704109 27704129 TCCGAACATAGTTATGTCGCT 59 NA Rattus norvegicus 81 Lypd6 ENSRNOG00000038980 ENSRNOT00000059588 3 1 1 80 3 35702578 35704327 GCTACAAGATCTGCACCTC 58 35704371 35704389 CAAATGTGGCATCAGTGTC 57 NA Rattus norvegicus 81 LOC690821 ENSRNOG00000049623 ENSRNOT00000052197 2 1 1 82 8 20780913 20781071 ATGGACCTCAAAGGGTGTC 59 20781115 20781135 TCTGAGAGGCTCATAAGATGG 59 NA Rattus norvegicus 81 Rilpl2 ENSRNOG00000001061 ENSRNOT00000001403 3 1 1 103 12 37551796 37552569 GTGCTACAGGAGTGGTCTC 60 37552636 37552654 TGGTCCTCTCCTCCTTCTC 60 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 1 2 2 80 9 17821055 17821074 TCAAATTGTATGTCCGTCGT 58 17821117 17821274 CACCACGGATGAAGTTGAG 59 NA Rattus norvegicus 81 Vom1r21 ENSRNOG00000039019 ENSRNOT00000059668 1 1 1 60 19 28377504 28377525 TATCTTCACAGAATAGGGAGGG 59 28377546 28377564 GGAAGACACTCAGAAAGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsf1 ENSRNOG00000021732 ENSRNOT00000050108 1 1 1 80 7 117560378 117560769 CTCAACATGTATGGCTTCCG 59 117560812 117560830 GAACTCGGTGTCATCCCTC 60 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000060403 2 1 2 80 17 22620814 22620837 GAAAGGATGAGGAGAAACTAAAGG 59 22620876 22633063 CCTGCAAGAGCAGATTCAG 59 NA Rattus norvegicus 81 Obsl1 ENSRNOG00000015346 ENSRNOT00000020673 3 1 1 81 9 82692253 82693658 GTGTCACTGTTCAAGATCCC 59 82692191 82692209 ACACTCTCGGAAGTGATGG 59 NA Rattus norvegicus 81 Ctf2 ENSRNOG00000030907 ENSRNOT00000041840 1 1 1 80 1 199173908 199173926 CATCGGTCAAGCCTATAGC 58 199169467 199173864 CCCTGGTACTGGAGATAGG 58 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572,ENSRNOT00000089747 1 2 2 80 4 21536316 21541767 TCAAGTGACTACAGAGTGCAG 60 21541809 21541827 AAACAAACAGCCCAAGACC 59 NA Rattus norvegicus 81 Pmpcb ENSRNOG00000012693 ENSRNOT00000017018 3 1 1 80 4 9911647 9911665 GACACGATCTGTCTCATGG 58 9910528 9911605 GCTCGATAAATTCATTCCTCC 57 NA Rattus norvegicus 81 Ly6g6f ENSRNOG00000027225 ENSRNOT00000037613 2 1 1 80 20 5074454 5074473 TGGTGTACTGTTATGGACCA 58 5074303 5074411 GAACTGGGATCCTTTGAGC 58 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 1 2 2 80 12 40435418 40435437 CTGGTTCTGAGGAAGAAACC 58 40435478 40438263 GGCTTTCATGATCCTGAACTC 59 NA Rattus norvegicus 81 Nsdhl ENSRNOG00000057814 ENSRNOT00000091154 1 1 1 80 X 152957637 152959639 CAGGAAAGAGCAGTACTGG 58 152959683 152959701 GCCAAATATGCCATGAGGA 58 NA Rattus norvegicus 81 Nasp ENSRNOG00000016454 ENSRNOT00000022170 1 1 1 80 5 135459253 135459271 AAACGGCTAATGAGTGTGG 58 135457125 135459210 ACACTCCATTCTCCATTCTG 57 NA Rattus norvegicus 81 Esyt2 ENSRNOG00000032391 ENSRNOT00000006582 3 1 1 80 6 144211638 144216940 CTGGACTAAACGGCTTATCTG 59 144216982 144217000 GAACGGTGATTCGATTGGG 59 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653,ENSRNOT00000016946 2 2 2 80 2 127703730 127704962 GGTCAGACAACTAGGTATGGAG 60 127705000 127705021 AAGGATGGAAGAAAGACATTGC 59 NA Rattus norvegicus 81 Tshz1 ENSRNOG00000016246 ENSRNOT00000021750 1 1 1 60 18 80863438 80863456 AGCCTCTTAAAGCCAAGGT 59 80863396 80863416 GAATGGTCCGTGATAATACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpn ENSRNOG00000059764 ENSRNOT00000077253 2 1 1 84 1 195078755 195078773 TCATTGGCACCTTTAAGGC 58 195078181 195078709 TTCTTTGGCTTGATCTTCCTG 59 NA Rattus norvegicus 81 Pds5a ENSRNOG00000002541 ENSRNOT00000003437 2 1 1 80 14 44256585 44256604 TCAACAGGTGAGAAGAATGG 58 44256647 44258099 AATTGCCTGTACCTTTGCT 58 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 2 2 2 80 16 8215855 8215873 CTCCATCAGTGAAGAGCCT 59 8215916 8217076 TGAAGAAATCAACCCACTGG 58 NA Rattus norvegicus 81 Lipt2 ENSRNOG00000016906 ENSRNOT00000022879 2 1 1 68 1 165171099 165171550 CAAGATCTGCGCTATCGGA 60 165171582 165171600 GAACAATTCAGAGCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Xpo5 ENSRNOG00000019085 ENSRNOT00000025921 1 1 1 80 9 17131471 17132377 ATCTATGCTTCGTGTCTTCGT 60 17131411 17131430 AGGATGGGAGATATCAGGGT 59 NA Rattus norvegicus 81 LOC290595 ENSRNOG00000043342 ENSRNOT00000065460 2 1 1 81 16 14358105 14360495 TCCTCAGAAGGGAGAAAGC 59 14358042 14358064 TTATGGGTTTGGATCTAGGAGAG 59 NA Rattus norvegicus 81 Ptprn2 ENSRNOG00000005003 ENSRNOT00000006942 3 1 1 80 6 144710126 144711662 GAAATGCTTCAAGATCACAGAC 58 144713905 144713923 AAGCTTGAAACTCAGACGG 58 NA Rattus norvegicus 81 AABR07046635.1 ENSRNOG00000047780 ENSRNOT00000033772 2 1 1 105 5 230928 230947 CTTCACTCAGGAAGAGTGGG 60 231010 231231 CCAATTGTAACCTATAGCAGTGAG 59 NA Rattus norvegicus 81 Mustn1 ENSRNOG00000017369 ENSRNOT00000023330 3 1 1 105 16 6964043 6964062 CCTGTGAAGGAAGAAGACCT 59 6964130 6964324 AGCCAGCTTGCTCATAGTC 60 NA Rattus norvegicus 81 Mansc1 ENSRNOG00000028526 ENSRNOT00000029510 2 1 1 81 4 168369967 168369985 TTTCTGTCCCAGTGAGGAC 59 168364223 168369924 CAGTGGAACATCTCTGAAGAG 58 NA Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 2 2 2 81 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692905 118692923 GTCTGACTTTGTCCTCCCA 59 NA Rattus norvegicus 81 Nxnl2 ENSRNOG00000014538 ENSRNOT00000019489 3 1 1 85 17 14058393 14058411 GAGATGCTGGACTTCATGC 59 14054470 14058344 CTCTTCTTCAGCTCATGCC 58 NA DesignRelaxed Rattus norvegicus 81 Tesk2 ENSRNOG00000017282 ENSRNOT00000023416 2 1 1 80 5 135657340 135657789 AACTGCTGTAATATGGACCC 57 135657831 135657850 TAAGCGGCTCATAATTTCCT 57 NA Rattus norvegicus 81 LOC100910999 ENSRNOG00000046736 ENSRNOT00000075557 1 1 1 60 11 85015430 85015451 ACCATTTCTTCTGTGATGTTCC 59 85015470 85015490 TAAACCCAAGTGTCCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldah ENSRNOG00000021475 ENSRNOT00000030244 1 1 1 80 6 33428527 33428545 ATGGATCATCTCGCATGCT 59 33428589 33439115 TGAGCATTTGGTTCCTGTG 58 NA Rattus norvegicus 81 Ldah ENSRNOG00000021475 ENSRNOT00000030244 3 1 1 80 6 33428525 33428544 GTATGGATCATCTCGCATGC 59 33428587 33439113 AGCATTTGGTTCCTGTGGT 60 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 2 2 2 80 8 4326272 4333303 ACGTATACAGATGCCAACCT 59 4333346 4333364 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Cog2 ENSRNOG00000018228 ENSRNOT00000058074 2 1 1 80 19 57301778 57301798 AACAAACTCCTGGAATTCGTC 59 57301839 57303813 GCCTTTCTCACTTGACACAG 59 NA Rattus norvegicus 81 Styk1 ENSRNOG00000010347 ENSRNOT00000013833 2 1 1 80 4 165530488 165530507 AGCATCCTACAGTATCTGCA 58 165529483 165530447 CTTCATGATGTTGTACATGGC 58 NA Rattus norvegicus 81 Gripap1 ENSRNOG00000009071 ENSRNOT00000012646 2 1 1 80 X 15542214 15542846 GAGGAACTTGCTAAGCTCTC 58 15542059 15542079 CAGTGTTTCCTTCTCTGTCTG 59 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935,ENSRNOT00000006408 3 2 2 80 3 122131235 122131257 AGAAAGGAATAGTAGAGCCTGAC 60 122131297 122135825 GTGAAGAAGGTTTGGCGAG 59 NA Rattus norvegicus 81 LOC100911044 ENSRNOG00000047616 ENSRNOT00000075013 1 1 1 80 1 62968879 62979035 TCCAATGAGACAGATATGGATCAG 60 62979072 62979092 CTCTAGGCAGTGGATCTTCTC 60 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 1 2 2 80 13 56901971 56904805 CTCGATGTGTTGAATCAACAG 58 56901911 56901930 CTGGTAATGACAAGGAGGTG 58 NA Rattus norvegicus 81 Slc22a23 ENSRNOG00000017210 ENSRNOT00000023149 1 1 1 80 17 31377936 31377958 GAAGTTGATCCTGTACCTTACAC 59 31377997 31384287 TTCTCTAGCTCTGGCATCAC 59 NA Rattus norvegicus 81 Cdk4 ENSRNOG00000025602 ENSRNOT00000031796 1 1 1 80 7 70350278 70350297 TATAGACCAGGACCTACGGA 59 70350339 70350470 CGCATCAGATCCTTAATGGT 58 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350,ENSRNOT00000080382 3 3 3 80 3 29868527 29870033 AGGATTTCAGGGAGAATTGC 58 29868466 29868484 AGACAGGAATCGGAGTCTG 59 NA Rattus norvegicus 81 Rps19bp1 ENSRNOG00000017847 ENSRNOT00000024085 3 1 1 60 7 121488760 121488780 AGTACCTAAGTCCGCATTAGG 59 121488720 121488738 CAAATCCTGCGAAGCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1141.1 ENSRNOG00000014898 ENSRNOT00000020006 1 1 1 60 1 113024425 113024444 CTGAGGATGATGAGAAGCTG 58 113024466 113024485 GCTGAACTTGTCACAATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910839 ENSRNOG00000021507 ENSRNOT00000033811 1 1 1 80 1 113463275 113463293 CAACAGCTCACTGAACTGG 59 113463336 113468482 CTGTGATTCCCTGTCAAGAG 58 NA Rattus norvegicus 81 Itgb1 ENSRNOG00000010966 ENSRNOT00000014785 2 1 1 80 19 61714633 61714855 CTGTGGAGGAAATGGTGTG 59 61714899 61714917 AAGGAACAGTCACATGCAC 58 NA Rattus norvegicus 81 Ncmap ENSRNOG00000048139 ENSRNOT00000073506 3 1 1 89 5 153729429 153730379 TGTACAACAGGAGAATGAGGAC 60 153729361 153729379 CATTGCTGTTTGGGTCCAG 59 NA Rattus norvegicus 81 Dennd5a ENSRNOG00000012206 ENSRNOT00000017485 3 1 1 80 1 174531041 174531059 CCTCTATCACCTGCTCTCC 59 174529806 174530997 TGGTATGGGATCAGGATGG 58 NA Rattus norvegicus 81 Rn60_1_1373.1 ENSRNOG00000051176 ENSRNOT00000077008 3 1 1 60 1 136246953 136246971 CAGATGTGGATCAGGAAGC 58 136246995 136247013 ATTGGCAGCAAACAATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 3 2 2 80 4 66144874 66146419 GAGAACCCAAAGAGACCCT 59 66146459 66146481 TCCTGATGATATACTCCACTTGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 2 3 3 80 10 74457424 74467244 GTAGAACATCAGTTGCGGTC 59 74467284 74467305 AACTTGCTGGAACATCATTAGG 59 NA Rattus norvegicus 81 Micall1 ENSRNOG00000026212 ENSRNOT00000036357 2 1 1 80 7 120363681 120366672 GATGCTGATCAAGTCTTCCT 57 120366715 120366733 GCCTTCCTTACAGTTGGAG 58 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000080202,ENSRNOT00000034283 3 2 2 89 16 8637299 8638583 TACTACAGGCTTTACCAGAGAC 59 8637231 8637250 TGATCTGATGTTGTCCACCC 60 NA Rattus norvegicus 81 Rn60_10_0873.4 ENSRNOG00000057025 ENSRNOT00000086816 3 1 1 60 10 87470479 87470500 GTTCATTAGCCAGTTCTTCGAG 60 87470440 87470461 GAAGATGTCAACATAAGGCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 1 2 2 80 14 79872217 79877485 TCGACATCCTTGAGGTCAG 59 79877527 79877547 TTATGACTGTTGTCACCTTGC 59 NA Rattus norvegicus 81 Prss57 ENSRNOG00000025293 ENSRNOT00000038553 3 1 1 172 7 12800602 12801995 ATTGCTTCAGTGACAGGGA 59 12802131 12803282 AGAGCCATTCAGCCTTAGC 60 NA Rattus norvegicus 81 R3hdm4 ENSRNOG00000011489 ENSRNOT00000015869 2 1 1 80 7 12615231 12615588 CACCTATGTGGAGGTTTGG 58 12615632 12615650 TCATCCTCCAAGTAACGGA 58 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000048764 ENSRNOT00000058323 3 1 1 92 3 19141172 19141364 AGTATCACAGTCTTAGTGTCCAG 59 19141416 19141434 GGTGATGGTGACCTTCTCC 60 NA Rattus norvegicus 81 Cfd ENSRNOG00000033564 ENSRNOT00000015029 3 1 1 80 7 12635050 12635069 GATGTGCAAAGTGTAGTGCT 59 12634844 12635008 GTGGGAGAGCTTAAAGAGCA 60 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927,ENSRNOT00000088469 2 2 2 81 14 78691209 78698849 GATCGGAGCTTCAACATCG 59 78691146 78691165 GATGGAACTCAGATGCTGTG 59 NA Rattus norvegicus 81 Tbxas1 ENSRNOG00000007918 ENSRNOT00000010796 2 1 1 80 4 66777673 66777691 CCAAGCCTGTGAACTTCTC 59 66777734 66780902 CAGTAACACCTCTGGATGTC 58 NA Rattus norvegicus 81 Dr1 ENSRNOG00000048308 ENSRNOT00000074874 3 1 1 83 14 2474218 2474236 ATATCTTCCGAAGCCAACG 58 2468257 2474173 ACTTTCTAGTGCTTGGATGAC 58 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 3 2 2 80 7 70564754 70565871 GGAGACTATGAAATGCTTGGA 58 70565913 70565931 GACTTCATGCAGTAGTCGT 57 NA Rattus norvegicus 81 Cspp1 ENSRNOG00000021718 ENSRNOT00000008480 1 1 1 80 5 8834764 8834783 TCTACTGGTGAAACAGACCC 59 8833654 8834722 TTTCAACCTTTCCTTGGCAG 59 NA Rattus norvegicus 81 Eef1g ENSRNOG00000020075 ENSRNOT00000027305 1 1 1 80 1 225166195 225168533 CTCTATAAACAGGTCTTAGAGCC 58 225168572 225168591 CTGGTTAATGCAGGTAAGGA 57 NA Rattus norvegicus 81 Nfkbia ENSRNOG00000007390 ENSRNOT00000009894 2 1 1 81 6 76269538 76269557 ATGGAAGTGATTGGTCAGGT 59 76269145 76269494 CCAAGTGGAGTGGAGTCTG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449,ENSRNOT00000086093 1 2 2 80 8 87211948 87211970 GAATACCAGAGACATAACCACAC 59 87212010 87213469 TTGACAATAAGCCGTGCTG 59 NA Rattus norvegicus 81 Rhob ENSRNOG00000021403 ENSRNOT00000008008 3 1 1 60 6 33690932 33690950 CGTGTTCAGTAAGGACGAG 58 33690890 33690909 CACATAGTTCTCGAACACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnh4 ENSRNOG00000018790 ENSRNOT00000025518 1 1 1 81 10 88649551 88651621 CTGAACCAAGAGATTTCCAGAC 59 88649491 88649509 CCTGTAAGAGGCCCATCAC 60 NA Rattus norvegicus 81 Gemin4 ENSRNOG00000055236 ENSRNOT00000087689 3 1 1 61 10 64372141 64375782 GGACCCTTGAATATCTGTGAG 58 64372100 64372118 TGTTCAGCCATCAAGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Cdkl1 ENSRNOG00000038720 ENSRNOT00000006374 1 1 1 80 6 92088342 92091149 CCATAAACACAACTGCATACAC 58 92088283 92088303 TCACAGAGCTTAATGACTGAG 58 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000047113 ENSRNOT00000072086 1 1 1 92 9 20217610 20217874 AAAGAAGAGCGGAGGAACC 60 20217536 20217554 TGGATATTTGACCCAGCCG 60 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786,ENSRNOT00000024465 1 2 2 80 1 255604226 255604334 TTCTGATGAAGTTGTAGCTCC 58 255604376 255604394 CCTGTTTCGTTCATGTGCT 59 NA Rattus norvegicus 81 C1qtnf5 ENSRNOG00000007613 ENSRNOT00000010127 1 1 1 135 8 48443822 48443840 CTAGGAGTCTGTCAGCGAG 59 48443939 48444202 GTAGTCTGTAGGCCCTTCC 59 NA InUTR Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000082149,ENSRNOT00000055290 1 2 2 225 7 144778073 144778091 TTCCTGGGCATGAATCCAG 60 144776902 144776920 AGAAGACTTGAGGCTGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Cdkn2aip ENSRNOG00000022736 ENSRNOT00000030519 2 1 1 89 16 47666982 47667569 GATATCGAGTAGCAATGAAGGG 59 47667619 47667637 CCATGATCTCGCTCAACTG 58 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 1 2 2 80 8 6872678 6872700 GTCATGACAGCTTTAGAACTCAG 60 6872735 6880601 CTTCCTGTAGTCATTCTTGAACTC 59 NA Rattus norvegicus 81 Rn60_20_0064.3 ENSRNOG00000052841 ENSRNOT00000080672 1 1 1 60 20 4240909 4240928 CTACCATGTGCTTGGATGAC 59 4240868 4240886 CTTCCAGAAGAAATGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgfrl1 ENSRNOG00000024207 ENSRNOT00000000037 1 1 1 86 14 2021990 2022008 AAGACAGTGGCAAGTACAC 58 2021843 2021941 GAGTACGCTGGATTACATCC 58 NA Rattus norvegicus 81 Crisp3 ENSRNOG00000013496 ENSRNOT00000018163 1 1 1 80 9 24078719 24082340 GACACTATACTCAGGTTGTTTGG 59 24082379 24082398 ATTTCAATGGTTGGTCAGGG 59 NA Rattus norvegicus 81 Cd2ap ENSRNOG00000011987 ENSRNOT00000016291 2 1 1 80 9 20846754 20849211 GCTACTCTTCAAAGCCATCTC 59 20849250 20849271 GCTCTAATGGACTTAGGAAAGC 59 NA Rattus norvegicus 81 Xrcc4 ENSRNOG00000029966 ENSRNOT00000045850 1 1 1 80 2 18677756 18760228 AGGAGAAGGAAAGGCTTGG 59 18677694 18677715 TTTCTAAGGACATCTTTGCAGC 59 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675,ENSRNOT00000066545 3 2 2 80 6 147094656 147097796 AACATCAGAGTGTTTATCTGGC 59 147094597 147094617 AGCAACCCAATCAAGAATGTC 59 NA Rattus norvegicus 81 Pak1ip1 ENSRNOG00000023799 ENSRNOT00000036195 1 1 1 83 17 21587994 21588013 GCAAAGATGAGACCATTCAC 57 21584611 21587948 AAGTTACTGTGCCACTGTG 58 NA Rattus norvegicus 81 AABR07051626.1 ENSRNOG00000029562 ENSRNOT00000040689 1 1 1 80 3 18244371 18244413 GAAACCAGGACAATGCATCC 60 18244310 18244328 ATGGTGAAGTCTGTCCCAG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000048738 ENSRNOT00000009295 1 1 1 80 X 15299657 15299677 ACCCAGTACATGAATGAAGGA 59 15299717 15299890 TGAATATGAGTTCGGATGCAG 58 NA Rattus norvegicus 81 Frzb ENSRNOG00000007765 ENSRNOT00000010247 3 1 1 80 3 67637095 67640679 TAAGAAAGTCAAGCGCTGG 58 67637033 67637051 TGATTCTGAGTGGAATCGC 58 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 3 2 2 92 10 36590566 36590584 AAGGTGATCTCCCTGTTGC 60 36590639 36598163 ATGACTGCACTTCAATCCGA 60 NA Rattus norvegicus 81 Impg1 ENSRNOG00000012479 ENSRNOT00000017048 2 1 1 80 8 87814887 87814911 AACTCATCATACGACTACTAGATGG 60 87813226 87814851 GTGGCTCAGTAACTTCATCAC 59 NA Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 2 2 2 80 1 250621260 250621281 GTCAAATCGAATGGCATTTGTG 60 250615353 250621221 TGTAGTCTCTTCAAGACCTCC 59 NA Rattus norvegicus 81 Pcgf3 ENSRNOG00000000062 ENSRNOT00000000071 1 1 1 80 14 2283257 2283276 GAGAACAATACCTGTCCCAC 58 2280244 2283214 CATGGTTCTGTCATGACCG 59 NA Rattus norvegicus 81 LOC501038 ENSRNOG00000033654 ENSRNOT00000045455 3 1 1 80 8 103350424 103351603 CTACATTTCCAGGTCTTGATCC 59 103351644 103351662 AACATCCACACGATGTCCA 59 NA Rattus norvegicus 81 Asb1 ENSRNOG00000020322 ENSRNOT00000027528 3 1 1 80 9 98682292 98684483 TAAAGAAGCCAGAAGTATTCCC 58 98684524 98684542 AGTCGGTATTTGCCAAGAG 58 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 2 2 2 80 X 16180376 16180396 GTCACCTTTGAAGACAGAGAC 59 16180438 16184456 AAAGGCTCCCTGATCTGTG 59 NA Rattus norvegicus 81 Olr1486 ENSRNOG00000055055 ENSRNOT00000083439 3 1 1 60 10 60308897 60308919 CTTCGTTATACCAGCATCATGAG 60 60308859 60308877 CCCAGGACATAAACACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb12 ENSRNOG00000000418 ENSRNOT00000000476 1 1 1 60 20 4573095 4573114 GACATCGTGAACTACCTGAC 58 4573137 4573155 ACTTCTCCACCACATGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss37 ENSRNOG00000012201 ENSRNOT00000016251 1 1 1 80 4 68344808 68347475 CTGCTATTTACCAAATCTGAGGG 59 68344750 68344772 GGATAAATTGTCTGCTCTGTTCC 60 NA Rattus norvegicus 81 Alg10 ENSRNOG00000014511 ENSRNOT00000019672 3 1 1 80 7 131332676 131332696 AATCTTCTCTTCAGTGTTGGC 59 131332737 131334287 TGAAGAAGCCTTGTTTCTGG 58 NA Rattus norvegicus 81 Exph5 ENSRNOG00000025115 ENSRNOT00000039336,ENSRNOT00000089686 3 2 2 113 8 57949084 57949102 CCATCATGAGGGAGGAGAG 59 57953885 57953904 TAGATTGTTCCTCAGCCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hmx2 ENSRNOG00000020638 ENSRNOT00000028011 2 1 1 197 1 203521151 203521169 CTTGTCTGTGTCCTCGGAG 60 203522178 203522196 GAAGGAGAAAGGAAAGGCG 59 NA DesignNoJunction Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 2 1 1 62 9 92925114 92927119 ACTTCTTCCTTGCTCAGCT 59 92927145 92927163 AGTCTTCGTAGAGCACACC 59 NA DesignNoJunction Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000059086 3 1 2 106 8 55504519 55504900 TGACTCTTTGTCCCTACCC 58 55504970 55504988 GGTACTCAGTTTCTCGTGC 58 NA InUTR Rattus norvegicus 81 Olr1362 ENSRNOG00000047553 ENSRNOT00000060995 2 1 1 60 10 12369783 12369802 GAACCCTTTCATCTACAGCC 58 12369742 12369762 GAGCACTTTCCTTAAAGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl16 ENSRNOG00000026647 ENSRNOT00000032926 2 1 1 80 10 57063702 57063933 TCTTTATCAGGTTCCAGTTGC 58 57063642 57063660 AGCAGTTCACTAGTTCACG 58 NA Rattus norvegicus 81 Bhmt ENSRNOG00000011200 ENSRNOT00000015336 2 1 1 96 2 23244854 23246200 AGATATCTGGGCAGAAGGTC 59 23244777 23244795 GTCTGACTCACACCTCCTG 59 NA Rattus norvegicus 81 LOC100911585 ENSRNOG00000047890 ENSRNOT00000071593 2 1 1 80 9 20242015 20242730 GGAGGTTAAGGACAGGGAC 59 20242771 20242792 TTCTCAGAAATATCCACGTAGC 58 NA Rattus norvegicus 81 Plp2 ENSRNOG00000039496 ENSRNOT00000045256 3 1 1 81 X 15679423 15680640 CTGAGATTATACTGTGCCTGGT 60 15680682 15680700 ATCTCAATCACCGACAGGG 59 NA Rattus norvegicus 81 Camlg ENSRNOG00000021911 ENSRNOT00000037088 2 1 1 83 17 9524390 9529191 TTTCCTAAGGGTGAGAAGAAGG 60 9524328 9524346 GTTTATCACCTCAGCCGGA 60 NA Rattus norvegicus 81 LOC100360411 ENSRNOG00000039601 ENSRNOT00000060703 3 1 1 98 16 15106093 15106112 TACAGCCGTGGTTCTACAC 59 15106013 15106033 AGAAAGAGTGTATGCCCAGTC 60 NA Rattus norvegicus 81 Cdc5l ENSRNOG00000019975 ENSRNOT00000027264 1 1 1 80 9 17954961 17956200 CATGGATGAGGATGAACTTGAG 59 17956239 17956259 TTCCTCTTAGCCTTCTTTCCT 59 NA Rattus norvegicus 81 Map3k14 ENSRNOG00000003278 ENSRNOT00000004532 1 1 1 80 10 91326082 91326103 GTGAGAATAGCCAAGAGTTCAG 59 91324738 91326041 TCTCAGACTGGCTGTACTG 59 NA Rattus norvegicus 81 Ndufc1 ENSRNOG00000038218 ENSRNOT00000058190 2 1 1 80 2 140463789 140463808 GTCAATGCCAAACCTAACTG 57 140463034 140463749 TTGGTGGATGAGATAAATCCAC 58 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 3 2 2 80 6 91891993 91892012 GATGTGGACCTCAATAGCTC 58 91888217 91890315 GCTGAAGAAAGACTTTGAGTG 58 NA Rattus norvegicus 81 Try10 ENSRNOG00000050119 ENSRNOT00000048049 2 1 1 90 4 70656286 70656736 CTTCGGTGTCAATGAACCA 58 70656214 70656233 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Mirlet7i ENSRNOG00000035642 ENSRNOT00000053765 3 1 1 60 7 66802744 66802762 TAGTTTGTGCTGTTGGTCG 58 66802785 66802804 GTAGCTTGCGCAGTTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clrn2 ENSRNOG00000027195 ENSRNOT00000022589 3 1 1 80 14 70160423 70160443 TTTACTACGGTCTCTTCCGAG 59 70154301 70160382 GCGGGAAGATTGTAAACTGG 59 NA Rattus norvegicus 81 RT1-Da ENSRNOG00000032844 ENSRNOT00000081202 3 1 1 60 20 4128866 4128885 CTCTTAACCAATGAGTCGCC 59 4128825 4128846 TGGTCAACGTTAGAAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Creg1 ENSRNOG00000003291 ENSRNOT00000004394 2 1 1 90 13 83977681 83977700 GACTGCCTACTGTAGGAACC 60 83977748 83978896 CTCATTTACTTTGATCACAGTCCC 60 NA Rattus norvegicus 81 Mir154 ENSRNOG00000035600 ENSRNOT00000053723 2 1 1 60 6 133888591 133888612 GCTTGAAGATAGGTTATCCGTG 59 133888632 133888651 TCAACCGTGTATGATTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptn ENSRNOG00000011946 ENSRNOT00000016088 2 1 1 82 4 64266091 64269056 GAAGCAGTTTGGAGCTGAG 59 64266027 64266045 CAGTTCTGGTCTTCAAGGC 59 NA Rattus norvegicus 81 Cmya5 ENSRNOG00000023803 ENSRNOT00000073710 3 1 1 80 2 22657607 22657625 CTTCTATGTGAGAGCCACC 57 22656395 22657564 AATCTAGTTCCTCTGGTGGA 58 NA Rattus norvegicus 81 Gnl3l ENSRNOG00000002509 ENSRNOT00000003397 3 1 1 80 X 20056672 20057319 CTGTAAGAAGCCTGCAAGG 59 20056610 20056630 TCATTGCCATGAACAATCTGG 59 NA Rattus norvegicus 81 RGD1564345 ENSRNOG00000008594 ENSRNOT00000011359 1 1 1 107 4 23718021 23718039 CCTCAGACCTCAAAGACAG 57 23717362 23717382 CGATTATGGACGATGAAAGAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dek ENSRNOG00000016152 ENSRNOT00000021751 2 1 1 107 17 17973632 17984239 AGTGAAGAGGAGCAACCAC 60 17984307 17984328 CGCCTTCTTAACATTAGCACTC 60 NA Rattus norvegicus 81 Mael ENSRNOG00000003790 ENSRNOT00000005060 1 1 1 80 13 84451712 84451733 GAGAAATACTCAGAAATGGCTC 57 84450357 84451672 TACGAGTTTCTGCTTCTCTG 57 NA Rattus norvegicus 81 Zbed3 ENSRNOG00000028941 ENSRNOT00000040983 2 1 1 62 2 25050481 25050499 CATCATACTCGGAGGCCTG 60 25050525 25050543 TCATTCTGTGCCTAGGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem107 ENSRNOG00000006519 ENSRNOT00000008787 1 1 1 81 10 55654399 55654499 AGGACAACCAACTGGTAGC 60 55654544 55654562 GAGACTCCTGAGAGGAAGC 59 NA Rattus norvegicus 81 Bhmt2 ENSRNOG00000040120 ENSRNOT00000061708 3 1 1 83 2 23273253 23276689 ATCAGAGCAAGGGCTAGAC 59 23273188 23273206 TGGCTTTGATAGGGAAGGA 58 NA Rattus norvegicus 81 Samd4b ENSRNOG00000019831 ENSRNOT00000026839 2 1 1 80 1 85359913 85359932 CCTGACCTGGAGATCAATCC 60 85359975 85360199 TTTGTCTGTCCCATCACCC 60 NA Rattus norvegicus 81 Pnma1 ENSRNOG00000010553 ENSRNOT00000014018 2 1 1 60 6 107631976 107631994 GACCTTTGATTCCTGGCTG 59 107631934 107631952 ATCAGACACCTGCCATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 1 2 2 80 13 74490422 74490440 CTTCATGCTCTCATGGCTG 59 74485280 74490378 ACTTAATAACGCCCACGTC 58 NA Rattus norvegicus 81 Atr ENSRNOG00000010027 ENSRNOT00000049967 2 1 1 80 8 103769280 103769299 GGAGTAAACCAGTGAAAGGA 57 103769342 103770136 CATGGGTCTTAGCCTTCTC 57 NA Rattus norvegicus 81 Frem2 ENSRNOG00000021670 ENSRNOT00000031487 3 1 1 80 2 142769492 142770970 ATCATCTGCATTACGGCCT 59 142769430 142769449 GTTGATGTTCTCACTGGCAC 60 NA Rattus norvegicus 81 Fra10ac1 ENSRNOG00000015235 ENSRNOT00000020620 3 1 1 80 1 256904771 256904793 GACAGATCTGGATGTTATACGAG 58 256903762 256904732 CTCTTCTCCCAAGTCATGTC 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 1 2 2 80 9 76766280 76767138 TACATAACGTGTGACAATGAGC 59 76766221 76766239 ATTGGGTGTGCTTGAAGTG 59 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 3 2 2 80 7 18536598 18539173 GTCAAAGAAGATCCTGATGGTG 59 18536422 18536442 TGCTACAAATACTGTGCTTCC 59 NA Rattus norvegicus 81 Fam135a ENSRNOG00000013587 ENSRNOT00000018234 2 1 1 80 9 30267942 30269026 CTTGTCAATACAGGTCTCTGG 58 30267882 30267902 TGAATGATCTCGACATGTCAG 58 NA Rattus norvegicus 81 Fam135a ENSRNOG00000013587 ENSRNOT00000018234 3 1 1 80 9 30296518 30296538 CATGCAGGTCCTATATGAACG 59 30293376 30296478 GTATCCATTGCCTCTAGACAC 58 NA Rattus norvegicus 81 Ryk ENSRNOG00000008593 ENSRNOT00000067203 3 1 1 80 8 111382980 111382999 CAAGCTTCTGAAGTTCAGGT 58 111383042 111388032 AGGAAGGAGGTTTCTGTGG 59 NA Rattus norvegicus 81 Slco5a1 ENSRNOG00000008966 ENSRNOT00000011940 3 1 1 80 5 5870056 5870074 GATTTACACCCTGGGACCA 59 5870118 5917990 ACGTACATGATGGCTAGGT 58 NA Rattus norvegicus 81 Eps8 ENSRNOG00000007047 ENSRNOT00000009328 1 1 1 80 4 171509807 171511801 TCCACTAAATATGGTGGTCCAG 60 171509748 171509767 GTGTCTTTCGTCAACAGTGG 60 NA Rattus norvegicus 81 Snhg11 ENSRNOG00000036802 ENSRNOT00000055200 3 1 1 135 3 154863708 154864423 AGTATCCCGAATTGACAGCT 59 154867833 154867852 CATGAGACAGTCACGTTCTC 58 NA Rattus norvegicus 81 Sv2c ENSRNOG00000018094 ENSRNOT00000024459 2 1 1 80 2 26536342 26536361 TGAGATTGAGAGTGACACAG 57 26535037 26536300 GTCAACCAAATTCCGTACAG 57 NA Rattus norvegicus 81 Galr3 ENSRNOG00000027060 ENSRNOT00000014349 2 1 1 85 7 120273130 120274024 GGACTGAGGAAGATGGCTG 60 120274073 120274091 GCAAAGATCACAGGCACTG 60 NA InUTR Rattus norvegicus 81 Abhd13 ENSRNOG00000014598 ENSRNOT00000019563 2 1 1 249 16 85330041 85330059 CGGAGAACAGGTTATGTGG 58 85320259 85329828 CTCCACGTAGGTGTCTCAG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Abhd13 ENSRNOG00000014598 ENSRNOT00000019563 3 1 1 250 16 85330042 85330060 CCGGAGAACAGGTTATGTG 58 85320259 85329828 CTCCACGTAGGTGTCTCAG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814,ENSRNOT00000018137 1 2 2 80 1 234412714 234412732 TTCGCAAAGCGGATAACAG 59 234412776 234416180 CACTTCCAAGCAACCTGAC 59 NA Rattus norvegicus 81 LOC302157 ENSRNOG00000047443 ENSRNOT00000075166 1 1 1 60 2 153140730 153140748 TGTCCATTCTCAAGCTCAC 58 153140688 153140706 CCCTATGACCATATGCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem246 ENSRNOG00000006800 ENSRNOT00000008883 1 1 1 60 5 64849859 64849880 AGATGATTATGGTGATGACCCT 59 64849820 64849843 GACATAGTCTTGCTTCTCTTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx10 ENSRNOG00000012500 ENSRNOT00000017683 3 1 1 80 8 57668238 57684144 AACACAAGATGAGTGACACC 58 57668177 57668198 TTCTTGGTCTTACATCATCGAC 58 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000079861 3 1 2 94 13 70175092 70175110 GAGAACAAGTTCGTGGACG 59 70176632 70177311 GTCATGTTTCCCACACGAC 59 NA Rattus norvegicus 81 LOC100910145 ENSRNOG00000048588 ENSRNOT00000073523 3 1 1 60 2 35310776 35310795 GTTGTGGTCTTTGTTCTGGT 59 35310818 35310836 AGACAAACGTGGTACTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcns2 ENSRNOG00000011369 ENSRNOT00000015707 2 1 1 167 7 73588249 73588267 GCAGGTTTGGGAAGTTTCC 59 73588991 73589011 GCCTACATTGATTCGGATCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 2 2 2 80 3 46711074 46721469 AACCCTTGCAGTAGTATCCC 59 46711013 46711033 CTCAGCATCATCAGTCAATGG 59 NA Rattus norvegicus 81 Rnf220 ENSRNOG00000019236 ENSRNOT00000026201 3 1 1 80 5 136135735 136135754 AGAATCCAGACAGTGATGCT 59 136135507 136135692 CAGCCTCTGTGTATTGTGG 58 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095,ENSRNOT00000061921 2 2 2 80 6 6966158 6967828 TACCAGATGGCTCAGATACC 58 6967872 6967891 TGATTTCACCTTTGTCAGCC 59 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 1 1 1 60 5 58416610 58416967 AAATGATACAAGGCAAGGGC 59 58416990 58417008 CACAGGTAGTCAAGGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 3 2 2 62 16 18640762 18640782 AATAGAGTACCTGGCTCACTG 59 18640396 18640739 TTCTTCTCTTCAGCTTTGGT 57 NA DesignNoJunction Rattus norvegicus 81 Pram1 ENSRNOG00000039204 ENSRNOT00000060002 3 1 1 81 7 18511952 18512044 TCTCAACATATTGCACAGAACC 59 18512084 18512104 GGCTGAGACTAGAGTCATCTG 60 NA Rattus norvegicus 81 Taf6l ENSRNOG00000019419 ENSRNOT00000026284 2 1 1 80 1 224979197 224979216 AACCCTTTGAATGACCACTG 58 224978842 224979154 AAGGTCTCCATGAGTCCAG 58 NA Rattus norvegicus 81 Trex2 ENSRNOG00000056983 ENSRNOT00000081973 1 1 1 60 X 157375046 157375065 TCCCTAACATGGATCCTGAG 58 157375088 157375106 AAGGAAGATCGGTGAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305807 ENSRNOG00000010497 ENSRNOT00000064113 1 1 1 80 5 61434952 61434970 AGGCAGCTAAATGTCACCT 59 61435010 61437612 GATGAAGAGTGATGGAATGAGAG 59 NA Rattus norvegicus 81 Ndufb2 ENSRNOG00000026616 ENSRNOT00000030892 2 1 1 80 4 67383938 67383958 AAGTGGACAGATGAAGAACTG 58 67384000 67385196 ACCTTGCTCTCGTACAGAG 59 NA InUTR Rattus norvegicus 81 Fam195b ENSRNOG00000036691 ENSRNOT00000054960 1 1 1 80 10 109721257 109721954 ATTTATGAAGCCTGGCAGG 58 109721195 109721214 ATATTCCTCCACTAGGCACC 59 NA Rattus norvegicus 81 LOC100912512 ENSRNOG00000016653 ENSRNOT00000022485 3 1 1 80 9 94595201 94595219 CCTTCCTGAGATCCAGAGC 59 94581639 94595157 AACTCAAACATGGCCTCCT 59 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 3 2 2 80 10 62687872 62687890 CCAATGTGGAGCTCATCAC 59 62687933 62688825 GTGTCTTACAGCCTTTGACC 59 NA Rattus norvegicus 81 AABR07067339.1 ENSRNOG00000022456 ENSRNOT00000037392 3 1 1 89 9 40817844 40817886 TACACAGCCTTCCAGAAGC 60 40817939 40817957 GATCCACCACTCCATTGGA 59 NA Rattus norvegicus 81 Tnfaip8l3 ENSRNOG00000024230 ENSRNOT00000038830 3 1 1 60 8 58647822 58647840 AGATTCTGGAGAGCAGAGC 59 58604100 58647799 GCTAAACACATGAGGACCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ndufaf3 ENSRNOG00000020068 ENSRNOT00000027262 3 1 1 81 8 117352656 117352676 TTTCACTATCAACGGAAACCG 59 117352462 117352613 ATGAGATCCCACGTTCCAC 60 NA Rattus norvegicus 81 Ppp4r1 ENSRNOG00000013733 ENSRNOT00000066793 3 1 1 80 9 113569460 113569566 ATTTCCTACAAGTTGGTCAGTG 59 113569607 113569625 ATTGATGAGCTCGACTCCG 60 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000077032 1 1 3 60 20 5118418 5118436 GATGTGGTCTTGGTGAGTG 58 5118459 5118478 GTGCTTTCAGATTTCCTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgk3 ENSRNOG00000049052 ENSRNOT00000072210 3 1 1 80 5 9080501 9086285 TACAACCATCCAGACGTCC 59 9080439 9080460 TTCATCCTCATCTTCAGATGGA 59 NA Rattus norvegicus 81 Prss58 ENSRNOG00000013132 ENSRNOT00000017611 2 1 1 80 4 69145888 69147441 CTATGTGACGTCACCAAGG 58 69145826 69145844 GGCATTATGACACTCAGCC 59 NA Rattus norvegicus 81 LOC102551744 ENSRNOG00000033125 ENSRNOT00000045349 1 1 1 60 6 3375578 3375598 ATTCAACAGAGAAACAGCAGG 59 3375620 3375638 CGTAATCATCAGCGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 1 2 2 80 10 56228459 56228665 AAGATCAGTGAAGAAGCCCT 59 56228707 56228726 TGGAATAATCTCTGCCACCA 59 NA Rattus norvegicus 81 Nup93 ENSRNOG00000018564 ENSRNOT00000025086 1 1 1 80 19 11165536 11165555 TCTATCTCCTCTTGGACCTG 58 11164873 11165495 GGTCGATAATATCGAAGGCTC 58 NA Rattus norvegicus 81 Zyx ENSRNOG00000017354 ENSRNOT00000023537 2 1 1 83 4 71746802 71746943 AGTAAATGAGTCCTGTGGC 57 71746989 71747008 ATATGGAACAGTTGTCCCAG 57 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734,ENSRNOT00000007998,ENSRNOT00000080581 1 3 3 81 3 129783245 129783264 CATATGGCCCTAGACATGGG 60 129783308 129787087 TGTTGGAGTCAGCCTTCTC 59 NA Rattus norvegicus 81 AABR07067037.1 ENSRNOG00000046593 ENSRNOT00000072794 3 1 1 80 9 27343942 27344518 CAAAGTGTCACTGTTTACAGCT 60 27344558 27344577 GCAGGCATTACTTTCTTGGA 59 NA Rattus norvegicus 81 LOC286960 ENSRNOG00000013245 ENSRNOT00000017852 1 1 1 81 4 69209716 69209735 CAGATCCTGTGCATCTACAG 58 69209145 69209672 TGCTGGGTATTTACCACCA 59 NA Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202,ENSRNOT00000085435 1 2 2 80 16 54091838 54092879 AGTAGTGGATAATGAGCTGTG 57 54091778 54091796 AGTTGCTTCCTTCTCTGTC 57 NA Rattus norvegicus 81 Gpaa1 ENSRNOG00000029280 ENSRNOT00000048706 2 1 1 80 7 117395264 117395283 CTGGAGGTCTACACTCAGAG 59 117395325 117395556 GGTACCCGAGACCATATAGC 59 NA Rattus norvegicus 81 Lat ENSRNOG00000017429 ENSRNOT00000023563 3 1 1 80 1 197769372 197769474 CAGATGATGCCAACAGTGTG 60 197769232 197769254 CATCTTCATCCTCATCTTCATCC 59 NA Rattus norvegicus 81 LOC689081 ENSRNOG00000005178 ENSRNOT00000006885 2 1 1 84 3 143192194 143192212 TTCAACAAGCAGAGCAAGG 59 143189912 143192146 TTTGTGGTGGTTCTTCCTG 58 NA Rattus norvegicus 81 LOC689081 ENSRNOG00000005178 ENSRNOT00000006885 3 1 1 84 3 143192193 143192211 TCAACAAGCAGAGCAAGGA 60 143189911 143192146 GTTTGTGGTGGTTCTTCCTG 59 NA Rattus norvegicus 81 Slco1a6 ENSRNOG00000030894 ENSRNOT00000048367 2 1 1 80 4 176346314 176349810 TAGCTTCAGGAGCATTTACC 57 176346253 176346274 AGTCTTAGAATGAAGAAGGCAG 58 NA Rattus norvegicus 81 Ilvbl ENSRNOG00000028512 ENSRNOT00000039852 1 1 1 80 7 14051649 14051670 GGTTGAGAAGGAGATGATACCA 59 14050012 14051610 AGGCAGTTCTGTAAGTACCAG 60 NA Rattus norvegicus 81 Ctr9 ENSRNOG00000017195 ENSRNOT00000023741 2 1 1 80 1 175847588 175847606 AGAAGGACTACAGAGGAGC 58 175847650 175851180 CTAGACGAACTTCAGCTGG 58 NA Rattus norvegicus 81 AABR07066949.1 ENSRNOG00000046783 ENSRNOT00000064279 3 1 1 97 9 23597022 23600994 CTGAAGGAAGGGTACTGCC 60 23601054 23601073 TTGAGAGTCAGTCTTGTGCA 59 NA Rattus norvegicus 81 Lekr1 ENSRNOG00000031247 ENSRNOT00000051494 1 1 1 80 2 157581180 157595861 GGGAGAAGATTGAAGCTGAG 58 157595902 157595922 CCTTAAAGAGAAGAGCTTGGT 58 NA Rattus norvegicus 81 Cd68 ENSRNOG00000037563 ENSRNOT00000056918 2 1 1 80 10 56269599 56269750 TTTGGATTCAAACAGGACCG 59 56269538 56269560 GAAGGACACATTGTATTCCACTG 60 NA Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760,ENSRNOT00000011890 3 2 2 80 2 100236053 100236071 GGGAGCACTTACTTCTTGG 58 100233035 100236011 GAATAACGTAGTGGTTTCCCA 58 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 2 2 2 80 3 117365382 117374378 ATTACCACGTGGTCTTGGA 59 117365320 117365338 GTTATGTTCAGCTGGCTGG 59 NA Rattus norvegicus 81 LOC100360604 ENSRNOG00000046349 ENSRNOT00000049571 3 1 1 60 9 66626956 66626979 GTACTCGGTATATGTTCTCTAGAC 58 66626919 66626937 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtcb ENSRNOG00000004813 ENSRNOT00000006570 1 1 1 80 7 23929553 23929572 TCTTAGACAAGCTGGCAGAC 60 23929614 23932738 ATGATTCTGGAGCCTCTTCC 59 NA Rattus norvegicus 81 Lrrc4b ENSRNOG00000019418 ENSRNOT00000026259 2 1 1 81 1 100450583 100466560 GAACAGCATTCAGGTGATCC 59 100466604 100466622 CACCAGATTCTTGCTCAGC 59 NA Rattus norvegicus 81 Pfn1 ENSRNOG00000003975 ENSRNOT00000005370 2 1 1 82 10 57274089 57275475 CTTCGTTAGCATTACGCCAG 60 57274026 57274044 CAAGTGTCAGCCCATTCAC 59 NA Rattus norvegicus 81 Sh3bp5 ENSRNOG00000052391 ENSRNOT00000082172 2 1 1 80 16 7475262 7475281 TGATGTTCCCAATACTGGGT 59 7474754 7475219 CTCTGTCTCCTCGTTCCAC 60 NA Rattus norvegicus 81 Kdelc2 ENSRNOG00000007177 ENSRNOT00000009497 3 1 1 81 8 57978804 57978822 AGAAGGGCAGTTAACTGCT 59 57978864 57980271 CGCATATTTCTGCAGTACTCTG 60 NA Rattus norvegicus 81 Atp5o ENSRNOG00000001991 ENSRNOT00000002732 3 1 1 80 11 32081990 32082010 TCTCTGAGTTAAAGACAGTGC 58 32081768 32081948 TTGATGGGTCAGTCTTGAC 57 NA Rattus norvegicus 81 Slc9a6 ENSRNOG00000000879 ENSRNOT00000066809 2 1 1 80 X 159012458 159014768 GTGGTGACAGCTTTAGTGAC 59 159014809 159014829 GGACATCAAGAAGAACAGACC 59 NA Rattus norvegicus 81 Ccpg1os ENSRNOG00000052869 ENSRNOT00000089949 3 1 1 85 8 79660268 79660287 GTCAGACTTCTCGCTATCAG 58 79656472 79660222 TTTCTTATCCAAGTCGCAGTC 59 NA InUTR Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493,ENSRNOT00000013761,ENSRNOT00000067349,ENSRNOT00000051097,ENSRNOT00000067189,ENSRNOT00000079935 2 6 6 84 5 150140520 150148644 AATCATACAGGTCCATGACTC 57 150140456 150140476 AGATCAACTCCATACATGGAC 57 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 3 2 2 83 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764994 93766522 TATTCACTGCACTTTCCACC 58 NA Rattus norvegicus 81 LOC100359539 ENSRNOG00000008450 ENSRNOT00000011163 1 1 1 60 19 25391945 25391963 ACCCAGCATTGAGGAAGAG 59 25391987 25392005 GGGAAAGACAACGAAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa12a ENSRNOG00000018019 ENSRNOT00000024548 2 1 1 80 1 279979611 279979631 CTGCATATTCATCTCCAGCAC 59 279978829 279979571 CAGCATCATTCAAGATGTGGG 60 NA Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000018854 3 1 2 94 16 23972369 23984540 TTGTGCAATTGACTGGGAG 58 23972293 23972311 GTTAATGTGGCCAAGTCCA 58 NA InUTR Rattus norvegicus 81 Pwp1 ENSRNOG00000005350 ENSRNOT00000007549 3 1 1 80 7 23998356 23998374 ACTCCTGTCTGCATATCCT 58 23997649 23998314 GCAATGTAATTTCCAGTAGCC 58 NA Rattus norvegicus 81 Kif1a ENSRNOG00000023993 ENSRNOT00000036061 2 1 1 80 9 100205515 100205533 GACAATGTGGTGACTGGTG 59 100199842 100205471 CAGGTATACGAAGGCCCTG 60 NA Rattus norvegicus 81 Tbx19 ENSRNOG00000002979 ENSRNOT00000063870 3 1 1 80 13 83415972 83415991 CGAATGGTCATGAACTGCTC 59 83409840 83415929 TTGAGGTGGTTTCTCCTCG 59 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 3 2 2 87 10 91792311 91792330 GAATGCCAGTTCCAGTTCAG 59 91790871 91792262 CTGTCTCCTTGAAGCCTCTC 60 NA Rattus norvegicus 81 Sox10 ENSRNOG00000011305 ENSRNOT00000015283 3 1 1 114 7 120401498 120401516 CTTTATGGTGTGGGCACAG 59 120397380 120401420 ACTCTCGTTCAGCAACCTC 60 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 1 3 3 82 20 4532690 4532708 TATCAGTGCCATCAAGGCT 59 4532752 4533422 TCTCTGGGTCCTTTAACTTCC 59 NA Rattus norvegicus 81 Gca ENSRNOG00000007359 ENSRNOT00000009697 3 1 1 81 3 48649041 48649059 TGAGGTGGATGCTGAAGAG 59 48649103 48654723 GGTTTCCAAGCTGAAAGGAG 59 NA Rattus norvegicus 81 Ubn2 ENSRNOG00000005564 ENSRNOT00000064175 1 1 1 80 4 66207558 66207576 TTGTGCCATGCAATAAGGA 58 66207617 66209714 GTTCTCTTAAACGATCATCCTG 57 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684,ENSRNOT00000092063 3 2 2 80 1 251237268 251239541 ACATCAGAAGAAAGTCATGACG 59 251237209 251237229 CTTCATCTTCTCAATTGCCCG 60 NA Rattus norvegicus 81 Spag1 ENSRNOG00000010078 ENSRNOT00000013801 2 1 1 80 7 75009454 75014412 ATTACACCAGGAGCTTATCCG 60 75014453 75014472 ATCTCTGCAGCTTGATTTCG 59 NA Rattus norvegicus 81 Spag1 ENSRNOG00000010078 ENSRNOT00000013801 3 1 1 80 7 75048478 75051903 CAGAAAGGACTCGAGAATTGC 59 75051945 75051963 TGCTTCACTGGAATCTGGG 60 NA Rattus norvegicus 81 Dgkk ENSRNOG00000039323 ENSRNOT00000060247 2 1 1 80 X 16457856 16457874 TCTGGGAAGCAAGGAACTG 60 16457593 16457813 ACAGCTTCTCCATCACACTC 60 NA Rattus norvegicus 81 Slc35g3 ENSRNOG00000014519 ENSRNOT00000019674 2 1 1 90 10 56367860 56368326 TCCAAGAAGAGATGGCTGC 60 56367788 56367806 GAAGTGAGGCTGGATGGAG 60 NA InUTR Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000041571,ENSRNOT00000052017 3 3 3 80 4 150698206 150698224 GGTTTCGTCATTGTCACCT 58 150696662 150698164 ACATTGTCTCTGGTTCTTGTC 58 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891,ENSRNOT00000011000,ENSRNOT00000084499 1 3 3 80 6 3784823 3784841 AAAGTCAGCGGAAAGACTG 58 3783518 3784779 AGTAGTCTTCCTCTGTGCA 58 NA Rattus norvegicus 81 Gsg2 ENSRNOG00000048660 ENSRNOT00000074018 3 1 1 60 10 59697500 59697518 GACCACAGAAGCTAAGGAG 57 59697458 59697478 TTCACAACACGATTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853,ENSRNOT00000079510,ENSRNOT00000064756 3 3 3 80 12 44122350 44122368 TTCACCTGTGTCAACATCC 58 44122412 44132259 GTCATGAAGCCTCACTCTC 58 NA Rattus norvegicus 81 Ankrd50 ENSRNOG00000010534 ENSRNOT00000045837 2 1 1 80 2 125297019 125302524 AAATGTTTACTGGGTTCCGG 59 125296958 125296978 GGATGTACTGCTGTACATCCT 59 NA Rattus norvegicus 81 Syt15 ENSRNOG00000051688 ENSRNOT00000079030 2 1 1 80 16 10557439 10559063 TCATCTTTCAGGTATCCAGCA 59 10559104 10559123 GCTTCCTCTGCTTGTTTACG 60 NA Rattus norvegicus 81 Syt15 ENSRNOG00000051688 ENSRNOT00000079030 3 1 1 80 16 10557436 10559060 GCTTCATCTTTCAGGTATCCA 58 10559102 10559120 TCCTCTGCTTGTTTACGTG 58 NA Rattus norvegicus 81 LOC100361476 ENSRNOG00000016336 ENSRNOT00000022008 1 1 1 60 20 45445048 45445066 CACCTTTGACAAACACGGA 59 45445006 45445026 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btf3 ENSRNOG00000016912 ENSRNOT00000022864 3 1 1 92 2 28420986 28421004 AAATGCTTCCCAGCATCCT 60 28418652 28420931 CATCCACAGATTGTTTGGGC 60 NA Rattus norvegicus 81 Ikbkap ENSRNOG00000016725 ENSRNOT00000022836 3 1 1 80 5 73510762 73510783 GAAACCAGCAGTATTAGGAGTG 59 73509968 73510722 AGATGACCTCGCAGATATCC 59 NA Rattus norvegicus 81 B4galt3 ENSRNOG00000003551 ENSRNOT00000004735 1 1 1 80 13 89647515 89647658 GTTTGGATACAGCCTTCCG 59 89647700 89647720 CCATTCATCTTCAGGTACTGG 58 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 2 1 1 87 3 123849076 123849746 AGTGCCTTGTTAAGTGGCT 60 123849007 123849025 TGTTTACTGTGCAACTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Aldh2 ENSRNOG00000001344 ENSRNOT00000001816 2 1 1 80 12 40494728 40494746 TCTTCACAAAGGACCTGGA 58 40494789 40497066 CATCGTAGCAGTTGATCCAC 59 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 1 2 2 80 7 13054380 13054399 TGAATCCCTTCCTAACTGGC 60 13054441 13054751 TCATCACATTGCACTGTGAC 59 NA Rattus norvegicus 81 LOC500876 ENSRNOG00000004914 ENSRNOT00000006510 2 1 1 60 7 100382756 100382776 TGAAATCAGACTCCCAAGTCC 60 100382716 100382734 TGTATCCTGCTGAGACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aurkc ENSRNOG00000015825 ENSRNOT00000021245 1 1 1 80 1 69963200 69963219 CTGAGATAGGGAAGGAGGGA 60 69962324 69963160 GGATATTCGGGTGTTGTAAGTG 59 NA Rattus norvegicus 81 Abca1 ENSRNOG00000018126 ENSRNOT00000024564 3 1 1 80 5 69913274 69913294 CTGCTCATTGGGAAGATTCTG 59 69912883 69913234 CTGAAAGGTCTTGTTCACCTC 59 NA Rattus norvegicus 81 Mettl2b ENSRNOG00000006131 ENSRNOT00000008140 3 1 1 80 10 93360487 93360975 ATTGTTCCAGACAAGATGCAG 59 93361017 93361035 GTCTCGAAGAAGCATCACC 58 NA Rattus norvegicus 81 Apoa2 ENSRNOG00000003500 ENSRNOT00000004662 2 1 1 80 13 89597925 89597945 GTTTAACTGACTATGGCAAGG 57 89597987 89598588 TCTGAAAGTAAGCCTTGGC 58 NA Rattus norvegicus 81 Uox ENSRNOG00000016339 ENSRNOT00000021970 2 1 1 80 2 252483099 252483117 GAATACTCACCTTCCGTGC 58 252483158 252485093 CATGTCTTCTATCTCAGGAAGC 59 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 3 2 2 80 8 94069340 94070366 GGTGTATATCTTGCTCTGGGT 59 94069280 94069299 AACTTCCTGATACAACCGGA 59 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818,ENSRNOT00000039999 3 3 3 80 11 35647400 35654703 TAATCCAGGTAGTGGCCAG 59 35647338 35647356 GTGATGCAGTTGGAGTTGG 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049,ENSRNOT00000081892 1 2 2 80 13 72947241 72947262 TAGTAAACGCTGGCAAATACTC 59 72929481 72947201 GACCTCGTTCTTTGTGAGTG 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049,ENSRNOT00000081892 2 2 2 81 13 72947241 72947260 GTAAACGCTGGCAAATACTC 58 72929478 72947197 AGTGACCTCGTTCTTTGTG 58 NA Rattus norvegicus 81 Tgm3 ENSRNOG00000006753 ENSRNOT00000063828 1 1 1 81 3 122570614 122570632 ATACATCAGCACCAAGGCA 59 122570677 122574189 CTCCTTGGAACCTTCTGGG 60 NA Rattus norvegicus 81 Cacna2d4 ENSRNOG00000008031 ENSRNOT00000010746 1 1 1 80 4 151330796 151330815 GATGAGCTGATGGTCAAAGG 59 151330858 151330976 CTCTTGGAACTGCTTCAGG 58 NA Rattus norvegicus 81 LOC100362987 ENSRNOG00000021159 ENSRNOT00000028733 3 1 1 60 9 10737718 10737738 CTTTATGGATGTGAAATGCCC 58 10737678 10737697 TTGTGTATGGCTAAAGACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gal ENSRNOG00000015156 ENSRNOT00000020425 1 1 1 80 1 218655042 218655061 TCATTTAGCGACAAGCATGG 59 218654622 218655000 AGCAACACTTCCTAGTCTCC 59 NA Rattus norvegicus 81 L3mbtl4 ENSRNOG00000025273 ENSRNOT00000029210 2 1 1 80 9 116854620 116854642 GGAAGAGAAGATACTGACTTGGA 59 116941749 116966342 CGAAGCTGAGTACTCTAGTCTC 60 NA Rattus norvegicus 81 Zfhx4 ENSRNOG00000008765 ENSRNOT00000011641 2 1 1 80 2 98448688 98456249 ACAGCCTCAGAAGAACTCAG 60 98448627 98448649 TGTCTCTTTCTCATCATCCTCAG 60 NA Rattus norvegicus 81 Zfp952 ENSRNOG00000029416 ENSRNOT00000043826 2 1 1 79 7 15280895 15280913 CACAAACATGAGCGAGCTC 60 15283075 15283093 TAAGTGCAGTCCCTGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Klf4 ENSRNOG00000016299 ENSRNOT00000022255 2 1 1 89 5 72285504 72285522 ACTTGTGACTATGCAGGCT 59 72284316 72285451 GTAAGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545,ENSRNOT00000080755 2 2 2 85 1 67831818 67831840 CCATGAGAATAATCTGCAAGAGG 59 67825938 67831776 ATGAGTTTACCTTCAAGCAGTG 59 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000051653,ENSRNOT00000085857 3 2 2 82 2 25088179 25089349 GGATTCTACTATGATTCTGAGAACC 59 25088121 25088139 CGACCACTTTCCACATCAC 59 NA Rattus norvegicus 81 Ntan1 ENSRNOG00000051382 ENSRNOT00000077695 2 1 1 80 10 3232200 3232219 AGAGCTTCCTTTCAAGATCG 58 3232262 3234473 AATGCTAATCATTGGGCCT 57 NA Rattus norvegicus 81 Hemgn ENSRNOG00000009436 ENSRNOT00000042649 2 1 1 80 5 62016532 62016550 CCAATCTCATCTGACGCTC 58 62012784 62016491 CTCCAAGATCCAATGATGTCTG 59 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 1 1 1 66 1 64129345 64129363 GAAAGCCATCCTTCCAGAG 58 64129393 64130588 TTTCTAGGGAAGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Hmgcr ENSRNOG00000016122 ENSRNOT00000022055 2 1 1 80 2 27483962 27483980 TCGAAGGGAGAGGAAAGAC 58 27483494 27483923 CCGTAGTCGTCTTTAATACTTCTC 59 NA Rattus norvegicus 81 RGD1564018 ENSRNOG00000022308 ENSRNOT00000011092 1 1 1 60 1 236530346 236530364 GACTTTCACCAGATTCCCA 57 236530304 236530322 TTTACAGTTTGTGCTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekha3 ENSRNOG00000011830 ENSRNOT00000016132 3 1 1 80 3 63549218 63551849 CTGTTCAGATGATGAAGCGT 58 63553971 63553990 CTGGTTCTTTGATGGAGCAG 59 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000082645,ENSRNOT00000030827 2 3 3 80 1 169452542 169452564 TAGGAGACCTCATCTTAGATGTG 59 169449911 169452505 TTATGGTGTTCTCTACACCCTG 60 NA Rattus norvegicus 81 Gnai3 ENSRNOG00000019465 ENSRNOT00000026710 1 1 1 80 2 210898979 210902292 GTTATCCAGAATACACAGGTTCC 59 210898921 210898942 TTCGGTTCAGATCTTCAAACTG 59 NA Rattus norvegicus 81 Gfap ENSRNOG00000002919 ENSRNOT00000034401 3 1 1 80 10 90997858 90997878 GATCTGGAGAGGAAGGTTGAG 60 90997033 90997817 GAGTTCTCGAACTTCCTCCT 59 NA Rattus norvegicus 81 LOC100361411 ENSRNOG00000030234 ENSRNOT00000042460 1 1 1 80 7 23012791 23012810 AAATCTTCACGGTTTCACCA 58 23012851 23017392 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 1 2 2 80 2 29614439 29614459 TGCATCCTTAATGGACAAAGC 59 29614499 29616645 GAAATGTTGTCCACAAACCGA 60 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 3 2 2 81 8 44063193 44063506 CTGGAAAGTGAGGTTCCAG 58 44063551 44063569 GAAGAGCAACCATCTCTGG 58 NA Rattus norvegicus 81 Lrp2bp ENSRNOG00000011178 ENSRNOT00000041617 2 1 1 80 16 49452872 49452890 TCTCGCTATCTCAGTACGC 59 49452133 49452830 TAGCATGGCGGTAATAATCAG 58 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 2 2 2 80 13 84104860 84104881 ACCTCAGCTTTAAGAACATGTG 59 84103654 84104821 AATCAGATGAGAGGTTCTCCG 59 NA Rattus norvegicus 81 Mgat4d ENSRNOG00000003695 ENSRNOT00000004982 1 1 1 80 19 24528382 24528403 CAGTACAAACCATCTCTGTTCC 59 24528442 24532604 GTAATGATCCTTGAGGTGCTG 59 NA Rattus norvegicus 81 Alppl2 ENSRNOG00000042889 ENSRNOT00000033487 3 1 1 80 9 94178653 94178671 AACTGGGTGGTCATCTAGG 58 94178713 94178899 CGTTGTATGTCTTGGACAGAG 59 NA Rattus norvegicus 81 Eef2kmt ENSRNOG00000002876 ENSRNOT00000003843 3 1 1 83 10 10536588 10536888 GCTATTTGCTGCCTTCAGG 59 10536935 10536953 ATGTAACCAAGCCTGTGGT 59 NA Rattus norvegicus 81 Ptpn20 ENSRNOG00000020203 ENSRNOT00000027352 1 1 1 80 16 9928252 9943201 TTCTGAAAGTAGCACTGACAC 58 9943241 9943261 CTGTTGAATATTAGCGGTCGG 59 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230,ENSRNOT00000084012 1 2 2 80 7 70371517 70371536 GAAACGGAGCTTAGACAGTC 58 70371578 70371683 CGCTTTAGCAGGAAACTCTG 59 NA Rattus norvegicus 81 Vom2r54 ENSRNOG00000026094 ENSRNOT00000034654 1 1 1 80 7 16961812 16961832 AAGCTTACCTGTTGCTTTGAC 60 16961870 16965921 CTTCATGCACTGGTTCATATCTG 60 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 1 2 2 80 1 100835152 100835263 GCATACACTCCTGGAATACCT 59 100835304 100835323 TTGGACATCACATCTCCCAG 60 NA Rattus norvegicus 81 Tanc1 ENSRNOG00000025394 ENSRNOT00000038983 3 1 1 80 3 45832529 45832550 AGGAGATCCAGTTATGATTCCC 59 45832588 45843778 TCATTATCCACCTTTGCTTCAG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 1 2 4 80 13 91222605 91227129 ATCTGGAAGTGATTTCTGACTG 58 91222546 91222566 ACCTTAATGTGATGGTTTCCC 58 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000037315 ENSRNOT00000048323 1 1 1 60 9 117466267 117466288 AATGCTGTACCTACTCTCATCC 60 117466228 117466246 CCCTAGTCTTCAGGTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r8 ENSRNOG00000059550 ENSRNOT00000089155 3 1 1 81 5 151020918 151026826 AGACAAGCTAATTGAGAAGCTG 59 151020858 151020876 GGTAAAGTCGCACAGATCG 59 NA Rattus norvegicus 81 Gstm5 ENSRNOG00000049743 ENSRNOT00000072342 2 1 1 80 2 210686969 210687414 ACAATTCTAACCACGAAAGCC 59 210687456 210687474 CCAGGAACAACGAGAACTG 59 NA Rattus norvegicus 81 Nfatc2 ENSRNOG00000012175 ENSRNOT00000065615 2 1 1 107 3 165272795 165288261 AAGACTACAGATGGGCAGC 60 165272257 165272275 GTGCTTGTTCCGATACTCG 59 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348,ENSRNOT00000077275 1 2 2 113 19 22604857 22604877 GATCTGTTTAACCAAGTCCCG 59 22603135 22604782 TTTATGGGACTGAGCTGCC 60 NA Rattus norvegicus 81 Kcna2 ENSRNOG00000018285 ENSRNOT00000050149 2 1 1 262 2 209841190 209841208 GGAAGAGAACCTCAGGCTC 60 209841856 209841874 ATAGGTGTCTTGAGGGTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt13 ENSRNOG00000014070 ENSRNOT00000018851 1 1 1 80 10 88034189 88034208 CTGGAGATGCAGATTGAGAG 58 88033951 88034148 GCTGAATTCCTTCATCTCCTC 59 NA Rattus norvegicus 81 Arhgef26 ENSRNOG00000014549 ENSRNOT00000019553 1 1 1 80 2 27181914 27184130 CAGAAGTTGTTAACAACCAACC 58 27184171 27184189 AGGTAAGTTCCTGCAGTCC 59 NA Rattus norvegicus 81 Sln ENSRNOG00000009047 ENSRNOT00000011974 3 1 1 110 8 58431421 58435390 TCTCTTCAGGACGTGAAGAC 59 58435462 58435481 TAAACAGCTCCTGGGTAGAC 59 NA InUTR Rattus norvegicus 81 Eif1 ENSRNOG00000033765 ENSRNOT00000041033 2 1 1 80 10 88228540 88228564 CCAGAATATGGAGAAGTAATTCAGC 60 88228600 88228928 AGCCAGTCCAATCTCTATCAG 59 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631,ENSRNOT00000090232 3 2 2 80 5 156512069 156516022 ATTCCCATTTAAAGCAGAGTCC 59 156516062 156516081 ATGTCCAATAGGAACTCCCG 59 NA Rattus norvegicus 81 Rpl5 ENSRNOG00000023529 ENSRNOT00000030428 2 1 1 80 14 2861753 2864008 TGACTCCAGACATGATGGAG 59 2861692 2861710 TGGGCTTCTTCTCGTAGAC 59 NA Rattus norvegicus 81 Dusp18 ENSRNOG00000024945 ENSRNOT00000005516 3 1 1 81 14 84153367 84153386 GGTTAACTCTCCCATGGGAC 60 84153429 84153551 ACCATCTGGTGTACTCAGTG 59 NA Rattus norvegicus 81 LOC685782 ENSRNOG00000024884 ENSRNOT00000039260 3 1 1 60 X 99250885 99250904 TGTTCATCAGAGACACTGGA 58 99250924 99250945 TCAGTACATATCTGGGAAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bgn ENSRNOG00000055962 ENSRNOT00000085201 1 1 1 80 X 157323334 157323647 TGACTTGGGTCTGAAGACTG 59 157323273 157323293 TCAGAGATGTCATTGTTCTGC 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 3 3 6 80 10 89221805 89221823 CCATTACTTACCACAGCCC 58 89218041 89221763 TTCAATAAATGGCTCCTCTCC 58 NA Rattus norvegicus 81 Mc1r ENSRNOG00000038193 ENSRNOT00000058145 2 1 1 60 19 56217387 56217406 TCGTCACTTTCTTCCTAGCC 60 56217428 56217447 GAGAGCATGTGGACATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm1 ENSRNOG00000029726 ENSRNOT00000047139 2 1 1 80 2 210808399 210808417 TCCCGACTATGACAGAAGC 59 210808091 210808358 TCAATTAAGTAGGGCAGATTGG 58 NA Rattus norvegicus 81 RGD1310262 ENSRNOG00000005619 ENSRNOT00000007519 3 1 1 218 19 25133118 25133136 GTCACTGCTAGAGCAGGAG 60 25132339 25132357 AACCTTCACAGACCTCAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07008377.1 ENSRNOG00000052207 ENSRNOT00000041483 2 1 1 60 2 55055494 55055513 AGTGTGGAGTTATAAGCCCT 58 55055453 55055472 TTCTGCCACTTCTCTAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il18r1 ENSRNOG00000015027 ENSRNOT00000020194 2 1 1 80 9 47194036 47197886 CTCAAGTGGGAAATGATCGTC 59 47197927 47197946 CAAGCTTCTCAGAGAAGCAG 59 NA Rattus norvegicus 81 Clic1 ENSRNOG00000029682 ENSRNOT00000068435 2 1 1 80 20 5045443 5048778 TTCACATAGTCCAGGTGGTG 60 5048821 5048839 TCAAGTACCGATGCACTCC 60 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 1 3 3 81 12 46801167 46801915 ATCTTGGATAAAGTGGTGACAG 58 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 RGD1309540 ENSRNOG00000014798 ENSRNOT00000040633 1 1 1 80 3 80098548 80099101 AAGTACAGCTGTCCACCAC 60 80098486 80098509 CACAAGGAATCCATAGAAAGTCAG 60 NA Rattus norvegicus 81 RGD1309540 ENSRNOG00000014798 ENSRNOT00000040633 3 1 1 80 3 80098550 80099103 ACAAGTACAGCTGTCCACC 60 80098488 80098510 CAAGGAATCCATAGAAAGTCAGC 60 NA Rattus norvegicus 81 AABR07049960.1 ENSRNOG00000047376 ENSRNOT00000073637 2 1 1 84 5 146294389 146294409 AAGACTGGAGAAAGAGGAGAG 59 146294454 146296059 GTCTGCATCACTTTCCTCAC 59 NA Rattus norvegicus 81 Map1b ENSRNOG00000017428 ENSRNOT00000023460 1 1 1 80 2 29683171 29683192 GGACAAGGAAACTAAGAATGCA 59 29681380 29683130 TTAGTGGTTCCTGGTCCTG 59 NA Rattus norvegicus 81 Ppp1r32 ENSRNOG00000020620 ENSRNOT00000028003 3 1 1 80 1 226522476 226522807 AAACCATCCAGATCTCTTGC 58 226522415 226522435 GGATTCTTGGTAGACTCTTCC 58 NA Rattus norvegicus 81 Cry2 ENSRNOG00000007478 ENSRNOT00000010142 1 1 1 80 3 81323437 81325615 CTTGTACAGAAAGGTGAAGAGG 59 81323378 81323401 GTATAGAAGAATTCTCGCCATAGG 59 NA Rattus norvegicus 81 Lonrf2 ENSRNOG00000023312 ENSRNOT00000033964 3 1 1 80 9 45488848 45488869 AGGAATTTATCTACTGCCTTGC 59 45486737 45488810 ACACCTCACATATTACCTTCTG 58 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146,ENSRNOT00000005958 2 2 2 80 7 83421254 83421855 TTTGCATCAACTAGAGGAGAC 58 83421895 83421915 TTCTGTGATATTCAGCGTGAC 59 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 1 2 2 80 16 61765423 61765443 TTAGTTTGTCCTTTGGAGGAG 58 61765482 61768142 GCCAGTATTGGTTGTATATTGG 57 NA Rattus norvegicus 81 Nkx2-4 ENSRNOG00000012647 ENSRNOT00000016915 1 1 1 193 3 141304610 141305033 TACTCGTCAATCTCCAGGT 57 141304435 141304453 TACTTCTGCTGCTTGAAGC 58 NA Rattus norvegicus 81 Nkx2-4 ENSRNOG00000012647 ENSRNOT00000016915 2 1 1 194 3 141304610 141305034 CTACTCGTCAATCTCCAGGT 59 141304435 141304453 TACTTCTGCTGCTTGAAGC 58 NA Rattus norvegicus 81 LOC680639 ENSRNOG00000049248 ENSRNOT00000048123 1 1 1 60 2 34419320 34419341 TACATGCGAATCTACAAGAAGG 58 34419281 34419299 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770,ENSRNOT00000078931 1 3 3 80 10 89185616 89185637 TTCTACAAAGTGAAGATGCCAG 59 89185672 89185775 GATAGTGAACCTCTCATTCTTATCC 59 NA Rattus norvegicus 81 LOC100912928 ENSRNOG00000048573 ENSRNOT00000045710 1 1 1 60 X 17540769 17540787 GGAGGATTGGGAAGACTCG 60 17540809 17540829 ATCTTCGATCTTGAACCACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 3 2 2 80 19 25247895 25247998 AGAAAGGAAGATCCTGGCC 59 25247833 25247852 TGTACTACGTCCTGGTACTG 58 NA Rattus norvegicus 81 Vom2r44 ENSRNOG00000010268 ENSRNOT00000013777 1 1 1 80 2 154605198 154605219 CTATCCACTCCAGAATCATCCC 60 154605258 154615344 CCCGAAAGTTAAACCCTTCAC 60 NA Rattus norvegicus 81 Olr72 ENSRNOG00000047528 ENSRNOT00000075135 3 1 1 60 1 168176758 168176777 CATCGACCGCTTTATAGCTG 59 168176717 168176736 CCTGACTGTAAGGATGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smptb ENSRNOG00000028033 ENSRNOT00000014611 3 1 1 60 X 17485367 17485386 GCCTCTTCATTCTCTTTGGT 58 17485326 17485347 CTGTTGAACAAGATCTTCACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr689 ENSRNOG00000058318 ENSRNOT00000078664 2 1 1 60 3 78044970 78044992 CACTACTCTTCCATTATGACCCA 60 78044932 78044950 CTGCCCAGGATACAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankk1 ENSRNOG00000025037 ENSRNOT00000068040 2 1 1 80 8 53754510 53754528 ATGGTGGACCTGATGAAGC 60 53753818 53754472 GTCTGTCTCAATGATCACATTTAGG 60 NA Rattus norvegicus 81 Rdh8 ENSRNOG00000025767 ENSRNOT00000032076 2 1 1 80 8 21839629 21840188 GGACATACTGGTGAACAACG 59 21840231 21840249 AACACATTCTGCATGGTGG 59 NA Rattus norvegicus 81 Nktr ENSRNOG00000049128 ENSRNOT00000071152 3 1 1 80 8 130385592 130386737 GGAGACAAGCTAAGTGACC 58 130386779 130386799 ATTATAGGACCATGATCGGGA 58 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 3 2 2 80 2 137325786 137325805 AAATTATACGACCAGTGGCT 57 137325338 137325745 TTCTAGAAGACTCTTCACTGC 57 NA Rattus norvegicus 81 Angpt4 ENSRNOG00000005008 ENSRNOT00000006786 1 1 1 80 3 147445633 147447143 CCTCTCAAGGTGTTCTGTG 58 147447187 147447205 ATTCAAGCTTCCATCCTCC 57 NA Rattus norvegicus 81 Hspa5 ENSRNOG00000018294 ENSRNOT00000025067 2 1 1 80 3 13840773 13841039 ATCAAGATACAGGTGACCTGG 59 13841081 13841099 TTGTCATGACACCTCCCAC 60 NA Rattus norvegicus 81 Hspa5 ENSRNOG00000018294 ENSRNOT00000025067 3 1 1 80 3 13840774 13841039 TCAAGATACAGGTGACCTGG 59 13841082 13841100 TTTGTCATGACACCTCCCA 59 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 1 2 2 81 1 70260222 70264200 CCTCTGCAGGGAAGAAGAC 60 70264243 70264263 TCCTGTGACACGTTCTTAGAG 60 NA Rattus norvegicus 81 Tox3 ENSRNOG00000028649 ENSRNOT00000029415 1 1 1 80 19 18182523 18186129 AGCCTCGTTTCTAAGGCTG 60 18186173 18186191 GTTGGTTGATGCCAGAGTC 59 NA Rattus norvegicus 81 AC133270.1 ENSRNOG00000031651 ENSRNOT00000051584 3 1 1 81 9 44010411 44010431 CAGAAGAGGACAAATTCACCA 58 44010473 44013440 GCTATGAACATTGTGCTCCT 58 NA Rattus norvegicus 81 Tigd4 ENSRNOG00000010741 ENSRNOT00000014409 3 1 1 60 2 183600172 183600190 GCTGCTCTTGATCTGACTG 58 183600211 183600232 ACAAGCCTTCAAGAAATTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sort1 ENSRNOG00000031814 ENSRNOT00000049127 1 1 1 80 2 211104752 211104771 CTGACTACTTTCCAAGTGCC 59 211104811 211117401 ATTCTTTCCGTAATCCTCACTG 58 NA Rattus norvegicus 81 AABR07013798.1 ENSRNOG00000030563 ENSRNOT00000052249 2 1 1 60 2 257295464 257295484 CTCCATCTGTAGAAGGTGGAG 59 257295505 257295524 CTAACAAGCCTGCTTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000057738 2 1 2 82 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83562889 83562977 TGTGTCTCTTTGTCAGTGGT 59 NA Rattus norvegicus 81 Lrig3 ENSRNOG00000007654 ENSRNOT00000032786 2 1 1 80 7 69258079 69258811 ATTACCAACACAGATGAGACC 58 69258853 69258871 CTGCCTGTCAGCTAATGTC 58 NA Rattus norvegicus 81 Olr75 ENSRNOG00000050328 ENSRNOT00000049036 1 1 1 60 1 168205107 168205125 TTGTCTTTATGCCACTGCC 59 168205146 168205167 CTGGGTCACAATGATAAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655,ENSRNOT00000036502 2 2 2 81 X 26365369 26376402 AGACAAAGAATTCATCCCACAG 59 26365309 26365329 TTGCTTCAGTTTATATGCCCG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655,ENSRNOT00000036502 3 2 2 83 X 26365369 26376402 AGACAAAGAATTCATCCCACAG 59 26365307 26365328 TCTTGCTTCAGTTTATATGCCC 59 NA Rattus norvegicus 81 Syndig1 ENSRNOG00000031536 ENSRNOT00000068210 3 1 1 80 3 145129294 145129312 CTCAGTGTCTTCTCCATGC 58 145129355 145198046 AGCTTTGTTTGTCTCATGGG 59 NA Rattus norvegicus 81 Timm50 ENSRNOG00000037638 ENSRNOT00000057096 2 1 1 80 1 85472604 85472808 AAATGGCACCAAGATTCCTG 59 85475338 85475359 TTGAAGTATTTGTATGTCCGGC 59 NA Rattus norvegicus 81 LOC100911393 ENSRNOG00000050465 ENSRNOT00000073677 1 1 1 60 X 119532857 119532876 GAATTCAATCACCCAGTGGA 58 119532816 119532837 CCCTTCATATAAGGTTCCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr101 ENSRNOG00000061381 ENSRNOT00000086124 1 1 1 60 1 168546801 168546824 CTATTCTTGCCTTCTATACACCTG 59 168546843 168546861 TTCTTGCCAATGCGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wwc3 ENSRNOG00000024250 ENSRNOT00000071173 1 1 1 80 X 24984693 24984712 GCCTCCAAAGAGATCTACCA 59 24984753 24986142 TGCTATCTTCTCCCTAAAGGT 58 NA Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000028020 2 1 2 80 1 203534548 203534567 CAAGTGTCACAGGCTAAAGG 59 203534607 203534630 ATGTGTTGTGGATAGTGAAAGG 59 NA Rattus norvegicus 81 Popdc3 ENSRNOG00000047102 ENSRNOT00000073259 3 1 1 81 20 50419777 50420933 CTGGTCTCAGGAAGGATCAG 59 50420977 50420995 CGGGAGAATCCAGGAACTG 60 NA Rattus norvegicus 81 Aoc3 ENSRNOG00000051307 ENSRNOT00000076820 2 1 1 84 10 89256078 89256096 GATACTCAGCTTTGCTGGG 58 89256144 89256482 CACAGCCAAGTGATACCTG 58 NA Rattus norvegicus 81 Ggt6 ENSRNOG00000015210 ENSRNOT00000045100 1 1 1 60 10 58996669 58996687 GTGCATCCTCATGCAACAG 60 58997008 58997029 AGGAGCTATTGTAGAAGAGACC 59 NA DesignNoJunction Rattus norvegicus 81 Ung ENSRNOG00000000692 ENSRNOT00000056865 3 1 1 81 12 48253293 48253311 ACACCACAAGGTCTATCCG 59 48249668 48253250 AATGACAACCTTCACATCACG 59 NA Rattus norvegicus 81 Olr378 ENSRNOG00000031224 ENSRNOT00000044719 2 1 1 60 1 230664589 230664611 AGTATCTGTCTTCTACACTGTGG 59 230664551 230664572 TCTCAGGGTATAGATAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc185 ENSRNOG00000022104 ENSRNOT00000037997 2 1 1 60 13 101161640 101161659 ACCGTCATATCTTGAAGCTG 58 101161599 101161617 TTGATGCCCTCAATGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magea8 ENSRNOG00000048840 ENSRNOT00000039874 2 1 1 60 X 43183675 43183695 AAGGTGTATGATTTGGTGGAC 58 43183717 43183735 TGGTAGTGAATGCCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col11a1 ENSRNOG00000023148 ENSRNOT00000068413 2 1 1 80 2 216924085 216930654 CGCACATAGATGAGTATGCAC 59 216930692 216930714 TCTCAGCCTCTTTATAGTCTGTC 59 NA Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 2 2 2 80 X 25486933 25486952 ATGAGTTCAGTGTGGTCTCC 60 25477392 25486893 CCGAGTTACAAAGACTAACGAC 59 NA Rattus norvegicus 81 Whsc1 ENSRNOG00000038140 ENSRNOT00000021952 3 1 1 80 14 82124418 82124437 CTGAAGTGGACAGTGAATGG 59 82124095 82124376 GAAAGTCAGCTCTGTACCTG 58 NA Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 1 2 2 80 2 252288447 252288814 GCAGCTCTTACAGCAACAG 59 252288855 252288876 TCTTCAAGCAAGTAACAGTCTC 59 NA Rattus norvegicus 81 Khdc3 ENSRNOG00000054460 ENSRNOT00000079458 2 1 1 81 8 79782133 79782293 GTGGAAATCATGTTTGGAAAGG 59 79782335 79782353 AGACGTTCACGTGAATCAG 58 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202,ENSRNOT00000066892 1 2 2 80 12 51335170 51337548 TGTTCAAGAGTATCAGGTTGGA 59 51335111 51335129 TCGATTCCTTCTCCACCAC 59 NA Rattus norvegicus 81 Ubqlnl ENSRNOG00000017016 ENSRNOT00000022852 2 1 1 60 1 169343704 169343722 TCCCTGACTCACTCTTTCC 58 169343662 169343681 GGTTTCTGTCTTGATGGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Barx2 ENSRNOG00000008592 ENSRNOT00000011386 1 1 1 80 8 32951605 32958922 AAGTGGAAGAAGATGGTCCT 58 32951544 32951563 GGGAATGGAGTTCTTCTTGG 58 NA Rattus norvegicus 81 Pate2 ENSRNOG00000033981 ENSRNOT00000060448 1 1 1 84 8 36851114 36851132 CATGAGATCCTGCACACTG 58 36851180 36851486 ATACATGCTCTGCCCTCTG 59 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213,ENSRNOT00000084311 3 2 2 80 10 89698974 89699201 CCGATTCAGAAGATCTCTTCCA 60 89692180 89692198 CATCACTGTCCGGTACCTG 60 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 3 2 2 80 14 83922987 83923088 GACCTTCTACTGAAGAACCTG 58 83923128 83923148 TAGGAGCATTCTTGATCACTG 58 NA Rattus norvegicus 81 Rasal1 ENSRNOG00000001374 ENSRNOT00000001856 3 1 1 80 12 41442569 41442587 ACTGTTCACCTTCCACTGG 60 41442355 41442525 AATGATGTCGTCGTGTCCA 59 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000082497 1 1 3 80 20 4893915 4894060 CTTTAGATGGGAGGCTCCT 58 4893853 4893871 ACTGCAATGATGGTCACAG 58 NA Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 1 2 2 80 1 141026715 141026733 ACCTCTACTTCCAGGACTC 57 141026775 141053127 GTGGTGGAATGTATTCTTTGG 57 NA Rattus norvegicus 81 LOC100911318 ENSRNOG00000030722 ENSRNOT00000040754 1 1 1 60 X 136736899 136736918 CTTCTCACTGCTCTACACTG 58 136736858 136736879 TCTCAAGCTATACACAATAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ino80e ENSRNOG00000019960 ENSRNOT00000027033 3 1 1 81 1 198297646 198297664 AGGTTTCCCGAGACAAGAG 59 198293969 198297411 GCATCTGAATCGGAAGAGTC 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 2 2 2 62 16 47181460 47206991 GCTGGATACTAAATACCCTTATGTG 59 47181422 47181442 GAATTCTTGTTCATGATGGCG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07055668.1 ENSRNOG00000025369 ENSRNOT00000035110 1 1 1 80 7 7574075 7574093 GTGACACTCACAGTTACGC 59 7574131 7574157 CTGTGCAGAGGAATTCATAATAGTC 60 NA Rattus norvegicus 81 Mettl21cl1 ENSRNOG00000022762 ENSRNOT00000039313 3 1 1 82 9 51009217 51009238 CTTTGCTGGTCATGAGATTCAG 60 51009281 51009992 AACATAGAACAAGGGCCGA 59 NA Rattus norvegicus 81 LOC100910577 ENSRNOG00000033583 ENSRNOT00000042498 1 1 1 102 7 9898080 9898098 TGGAAACCTACTGGAACCT 58 9898365 9898895 CAGTTGAAATACCTTCCATGAC 58 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 3 2 2 80 12 52112092 52112111 AATGGTACCTGGAGAACGTG 60 52109595 52112051 CTTTGCTGTTTCTCACCTCTC 59 NA Rattus norvegicus 81 Clcf1 ENSRNOG00000018752 ENSRNOT00000025342 2 1 1 104 1 219469287 219471028 GGGACCTACCTGAACTACC 59 219471096 219471114 CACTTCCAAGTTGACCGTG 59 NA Rattus norvegicus 81 Slc9a9 ENSRNOG00000008554 ENSRNOT00000011358 1 1 1 80 8 102919127 102919148 TGGATAAAGACATGACGAAGAC 58 102919188 103019423 TGGGTTTCAGGTATTTGTGG 58 NA Rattus norvegicus 81 Gatsl3 ENSRNOG00000006740 ENSRNOT00000009150 3 1 1 80 14 84448670 84449841 TGAAGAGGGCTTTAAAGAGCT 60 84449883 84449901 TGAGACACGTTCATCACCA 59 NA Rattus norvegicus 81 Polm ENSRNOG00000013647 ENSRNOT00000018319 3 1 1 80 14 86075889 86075907 GCTGCTAGAACATGGAACG 59 86072870 86075845 TGGGTGAAGAGCTTCATGG 60 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 1 2 2 80 20 5006176 5006194 TTATGATTTCCCAGCCGTC 58 5006237 5006401 TTTAGGCACTCCAAGTAGAC 57 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 2 2 2 80 20 5007093 5007111 CTGAGCATCACTAGAGCTG 57 5007154 5007291 TACTTCCAAGAAACAGTCGG 58 NA Rattus norvegicus 81 Il6st ENSRNOG00000013963 ENSRNOT00000018877 3 1 1 80 2 44304627 44304647 CTCTAGCAGCAAGAAATGTGG 59 44304688 44305127 GGTGAGAAGCTTTGAAGTGG 59 NA Rattus norvegicus 81 LOC100362927 ENSRNOG00000037481 ENSRNOT00000056733 2 1 1 60 12 51965559 51965581 GTAGAAGTAGTAGGGAAAGTCAC 58 51965521 51965542 ACAGGATATAAGATGCACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000084938 3 1 5 61 20 4420935 4420955 TTCTATGTTGTCTCCTTCCGA 59 4421108 4421126 GTCTTGTTGTGGCTGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Mmab ENSRNOG00000049426 ENSRNOT00000072511 2 1 1 88 12 47927276 47927294 CACGGGAGAAAGAAGACCT 59 47927346 47927898 CCATGGCAAACCCAATAGC 60 NA Rattus norvegicus 81 Lta ENSRNOG00000000838 ENSRNOT00000001111 2 1 1 185 20 4852802 4853183 AGCCTTATCTGGTTCTCCC 59 4853414 4853432 CATGGGTCAAGTGCTTCTG 59 NA InUTR Rattus norvegicus 81 Zfp524 ENSRNOG00000016565 ENSRNOT00000022193 1 1 1 60 1 72376509 72376529 CTTGTTTCTGGTGGTATTCCT 58 72376469 72376487 CCAGAGGTTTAGGTCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp524 ENSRNOG00000016565 ENSRNOT00000022193 3 1 1 60 1 72376508 72376527 TGTTTCTGGTGGTATTCCTG 58 72376467 72376485 ATCCAGAGGTTTAGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684376 ENSRNOG00000047871 ENSRNOT00000070789 2 1 1 60 1 168082390 168082408 ATTTGTGGCTATCCGAGAC 57 168082348 168082368 TCCAATAACACCATGAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 3 2 2 80 9 61331913 61331931 GTGGCTGCAAGATATGGTC 59 61324126 61331869 ATGGATTCCACACTTGGCT 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 3 3 3 80 2 216341296 216341318 GAAGTGACCATTAATCCAGACAC 60 216341131 216341258 AACCATGTTCCTGATTTGACG 59 NA Rattus norvegicus 81 Pygb ENSRNOG00000007583 ENSRNOT00000010157 2 1 1 80 3 146605318 146605340 GGAAGAACTAGAGGAAATAGAGG 58 146605380 146607847 GAATCAAGGAAGCAAGCTG 57 NA Rattus norvegicus 81 Myo6 ENSRNOG00000011852 ENSRNOT00000016428 2 1 1 80 8 87680957 87685382 CATTTCCGACTCACTATTCCC 59 87685423 87685442 CCTGATGATAAAGCCTTCGT 58 NA Rattus norvegicus 81 Dusp4 ENSRNOG00000011921 ENSRNOT00000016328 3 1 1 80 16 61081149 61081986 GCCATCGAATACATAGACGC 59 61081088 61081106 GGCTGATCTAGAGATGCCG 60 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000012086 ENSRNOT00000016098 2 1 1 60 16 70081761 70081784 CGGATGAAAGTTAAGAAACTACCC 60 70081928 70081948 ACTTAAACCTCTTCAGGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Pstk ENSRNOG00000020605 ENSRNOT00000027967 1 1 1 80 1 201957294 201957315 CATCCTTCATAAAGCTGATGAG 57 201957353 201960357 GGAGGTATTTGTTCATCTTTGG 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 3 2 2 80 2 210700542 210700560 AGCACCGTATGTTTGAGCT 60 210698777 210700500 TCTCAAGGGTCTCAAATCGAG 60 NA Rattus norvegicus 81 Rbp1 ENSRNOG00000013794 ENSRNOT00000018622 2 1 1 96 8 106468975 106468993 GGTGACAAGCTTCAGTGTG 59 106469053 106470608 CTGCTCTCATCTCCAGGTG 60 NA Rattus norvegicus 81 Id3 ENSRNOG00000026124 ENSRNOT00000035788 3 1 1 63 5 154489925 154490058 CATCTCCCGATCCAGACAG 59 154490084 154490103 AACTCCTCTTGTCCTTGGAG 59 NA DesignRelaxed Rattus norvegicus 81 Eps8l1 ENSRNOG00000027942 ENSRNOT00000032306 2 1 1 80 1 72937449 72938260 CCAGTATCATGTCAATCACCTG 59 72937390 72937409 TTTCTGGAAGCATCTTCCAC 58 NA Rattus norvegicus 81 Mrps22 ENSRNOG00000047984 ENSRNOT00000070953 1 1 1 80 8 106609712 106610224 GAGAACCTTAAGACCATGTACAG 59 106609654 106609672 GGAATCTGGCTCAAACTGG 59 NA Rattus norvegicus 81 Sfxn4 ENSRNOG00000036572 ENSRNOT00000054674 2 1 1 80 1 282226021 282227194 TCTTTCTTGCCCAAATCAGC 59 282225960 282225981 TATCCATCACCTCAATTCCTCG 60 NA Rattus norvegicus 81 Olr199 ENSRNOG00000029755 ENSRNOT00000046417 1 1 1 60 1 170125816 170125834 CACCATCTACTGTGAGCCA 59 170125856 170125876 AGCCAAGATACCAAGAAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360154 ENSRNOG00000038864 ENSRNOT00000059383 3 1 1 80 8 50604892 50604912 GTACAGGCCGATTTAATGGTC 59 50604954 50605003 AATCGGAGATAGACTCGCC 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 1 2 2 80 5 78309546 78310823 AGACCATCAGATTATGGGACTG 60 78309487 78309505 CACAATGGGTCTGGATGTG 59 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548,ENSRNOT00000077892 3 2 2 60 20 4489184 4489202 GTGGAAGCTCTGGAAACTC 58 4489142 4489162 CTGTAGAAAGTGCAGAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gk5 ENSRNOG00000010942 ENSRNOT00000067835 2 1 1 82 8 103980466 103984267 GACTACAGGCTCCATTAAATGAC 59 103984304 103984327 GACGAGATGGTATTTACTAGTGGA 60 NA Rattus norvegicus 81 Trak1 ENSRNOG00000019262 ENSRNOT00000026106 3 1 1 80 8 130062888 130062906 AAAGAGTTGGCCAGATGAC 58 130062950 130074571 CCAAATCCCGCTCTTTCTC 59 NA Rattus norvegicus 81 Scaper ENSRNOG00000006864 ENSRNOT00000009169 1 1 1 80 8 60452220 60453295 CTGTGCAGGAACGTAAGAG 58 60452158 60452176 CTTGCTCTTTCCTCTTCGT 58 NA Rattus norvegicus 81 F3 ENSRNOG00000011800 ENSRNOT00000015836 2 1 1 80 2 225319783 225319802 AAACTAACCACAAGAGCCCA 60 225319842 225321377 CAATGATGAGTGTTTCTCCCAG 59 NA Rattus norvegicus 81 Tal2 ENSRNOG00000028082 ENSRNOT00000035687 2 1 1 61 5 70598434 70598452 CTCCAGACAAGAAGCTGAG 58 70598474 70598495 GAAGTTGATATACCTCATTGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574,ENSRNOT00000065222 3 2 2 80 2 227577843 227578218 TTCCTTAAGGGAACGCAGAG 60 227577782 227577803 ATTCTGAGGTCTATGTCCAGTG 59 NA Rattus norvegicus 81 Mrps30 ENSRNOG00000012136 ENSRNOT00000016190 2 1 1 82 2 51045142 51046800 ATTTACTGGCTCCAAACTTGC 60 51045080 51045102 GTTCCCTATTCAGTATGTCAGGT 60 NA Rattus norvegicus 81 Cdcp1 ENSRNOG00000004743 ENSRNOT00000006272 1 1 1 80 8 132273540 132274760 GATCGTCTATCAAACGCCT 57 132273478 132273496 GGTAGTTGGCTGACATCAG 58 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 3 2 2 80 2 225601393 225602437 TATAAGTCCAGGAGACTTTCATCG 60 225602471 225602494 TCATCTAGATCATCAGCAGAAGAC 60 NA Rattus norvegicus 81 Kdf1 ENSRNOG00000055933 ENSRNOT00000081318 1 1 1 111 5 151750967 151751560 CCAGGATGAACTGACAGTG 58 151752100 151752118 GAAGGATGAGTCTTGGCTG 58 NA Rattus norvegicus 81 Rbm6 ENSRNOG00000018333 ENSRNOT00000024939 1 1 1 80 8 116609610 116609628 TTCTTAACGCCTTTCGGAC 58 116597062 116609572 CATAGTCGTAACCTGTGTTATACTC 59 NA Rattus norvegicus 81 Dclk3 ENSRNOG00000033026 ENSRNOT00000044742 3 1 1 81 8 119739939 119739958 GCTCTTCAACATCATCCAGC 59 119740001 119743479 CAGATCTTTGGCAGCATCAG 59 NA Rattus norvegicus 81 Padi1 ENSRNOG00000007067 ENSRNOT00000009921 3 1 1 80 5 159358301 159371101 ATGTGTACAGTGATGTGCC 58 159358239 159358260 CGTAGACCATGTAGATCTTCAC 58 NA Rattus norvegicus 81 Olr1327 ENSRNOG00000052227 ENSRNOT00000092067 3 1 1 60 8 43747765 43747784 AGTCCACTGTCATTACTCCC 59 43747805 43747825 GAGATGATGTTCTGCATGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr0b2 ENSRNOG00000007229 ENSRNOT00000009683 2 1 1 147 5 151776563 151778788 ATCCTCTTCAACCCAGATGTG 60 151778897 151778915 AAGCCATGAGGAGGATTCG 60 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 1 2 2 80 2 211787103 211792219 CTTGGGATAGCAGATCTTTCAG 59 211787044 211787064 GCTTGATGTTCTAGAGTGTCC 59 NA Rattus norvegicus 81 Slc25a54 ENSRNOG00000027522 ENSRNOT00000038315 2 1 1 80 2 211921488 211921507 TTCAGCAGAGGCTATGTTCC 60 211921547 211922125 CTTCAGAAGCTCAAAGATGGTG 60 NA Rattus norvegicus 81 Ppapdc1b ENSRNOG00000015568 ENSRNOT00000020900 3 1 1 87 16 71123902 71123920 TCTGACCTGACTTGCACAG 60 71123236 71123852 CAGCAAAGGCAAAGGAAGAG 60 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485,ENSRNOT00000064466 2 2 2 82 20 50564001 50564022 CTTCATCTCCATGATAAGTCGG 59 50517995 50563961 CCATGAATAGTTTGCTTTGGTG 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 1 3 4 80 2 53166095 53179745 TGAAATAGTGCAACCTGATCC 58 53166035 53166053 ATATCTCCACGGATCCCAG 58 NA Rattus norvegicus 81 Tmem210 ENSRNOG00000040275 ENSRNOT00000061987 1 1 1 73 3 2504747 2504927 CATACCTGCTTCAGCTGGA 60 2504964 2504982 CAATGAGGGCAATAAGGGC 59 NA DesignRelaxed Rattus norvegicus 81 Casp6 ENSRNOG00000009508 ENSRNOT00000013049 3 1 1 80 2 230195253 230196653 TTCATCATCCAGGCCTGTC 60 230196695 230196715 CTTGTCTGTCTGATGATCCAC 59 NA Rattus norvegicus 81 Hace1 ENSRNOG00000000327 ENSRNOT00000000365 2 1 1 80 20 50770878 50771177 GAAGATCCAGTTATTCAGTGGT 58 50771217 50771236 CACGAACTGTAAGAGAAGGA 57 NA Rattus norvegicus 81 RGD1564138 ENSRNOG00000037172 ENSRNOT00000050117 1 1 1 60 8 119214608 119214626 CCCGGTCACAAAGATACGA 60 119214647 119214668 CTCATGTTCCTCAGAAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 2 2 2 80 3 133113980 133114000 GCAGGCTATCATTCTGAATCC 59 133108258 133113940 TAGCTTCTCAATTGCCTTCTG 58 NA Rattus norvegicus 81 Mettl24 ENSRNOG00000024221 ENSRNOT00000036766 1 1 1 80 20 48649174 48656897 CCTCTACTCTTTAGGGCTGG 59 48649113 48649131 AAACGATGCACTTCACACC 59 NA Rattus norvegicus 81 Mettl24 ENSRNOG00000024221 ENSRNOT00000036766 3 1 1 82 20 48649173 48656896 CTCTACTCTTTAGGGCTGGG 59 48649110 48649128 TCGAAACGATGCACTTCAC 59 NA Rattus norvegicus 81 Ppcdc ENSRNOG00000018711 ENSRNOT00000025293 3 1 1 84 8 62109144 62109162 GATCCCTGCTCAAGATCAC 58 62108054 62109096 GAGAAGAATCTGCCCTGTG 58 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 2 2 2 80 5 154931752 154932854 AGAAGCACCTTATAACAGTGAC 58 154931693 154931712 CCGAAGTTGATAAGACCGTG 59 NA Rattus norvegicus 81 LOC100909911 ENSRNOG00000048426 ENSRNOT00000072213 3 1 1 60 20 8486498 8486517 TCGTTTCCAGATGAGAATCC 57 8486538 8486558 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 2 1 1 67 16 49186079 49186322 ACAGAGTTCCGGGAAACTG 60 49186353 49186371 GCAGAGCTCTGAGGTACTG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07050438.1 ENSRNOG00000033792 ENSRNOT00000051887 2 1 1 75 5 164502351 164502374 GGAGACGTACAACAATCTATTGTC 60 164422335 164422353 GTCTTGTTCCAAGACCTCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911156 ENSRNOG00000000582 ENSRNOT00000000710 1 1 1 80 20 48755509 48755529 TCCAGCATCTTTCTGAAATCG 59 48748990 48755468 GAAATATCTGCCAGCCAGAC 59 NA Rattus norvegicus 81 Fut10 ENSRNOG00000050857 ENSRNOT00000071166 3 1 1 85 16 64698048 64703840 GGTGACAGTCCAGGTAGTG 59 64697981 64698001 CATCTTTCTGTCCATCTTGCA 59 NA Rattus norvegicus 81 AABR07044281.1 ENSRNOG00000045959 ENSRNOT00000074812 2 1 1 96 20 969451 969471 ATACATCCCAAGAGGCTGC 60 969373 969394 GCAACGAGAATTCTGACATAGG 60 NA Rattus norvegicus 81 Gm10100 ENSRNOG00000033928 ENSRNOT00000045125 2 1 1 128 20 11612394 11612412 CAGTTGCTCTTCAGGTTGC 60 11612504 11612522 ACAGGAACACATATGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1675 ENSRNOG00000047267 ENSRNOT00000048277 2 1 1 60 20 34977 34996 CTCTTATGTCCTTTGACCGA 57 34936 34958 ATTATGAGGGTGTAGTGTAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000050612 ENSRNOT00000073543 2 1 1 60 20 734857 734877 ATCCTTCTCTGTCACAATTCC 58 734899 734917 TATGTAGCCACTTTGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 3 2 2 80 5 105578893 105578911 GTCAAGGTGACAGTGTCAG 58 105427859 105430505 CGGCTTATTCGGTAACGTC 59 NA Rattus norvegicus 81 Chrnb3 ENSRNOG00000012448 ENSRNOT00000016656 1 1 1 80 16 68877636 68880231 ACTTCATCAGCCAGGTAGTG 60 68877575 68877595 CTATCAGAAAGAGCCACAGGA 59 NA Rattus norvegicus 81 Fam166a ENSRNOG00000010019 ENSRNOT00000013335 2 1 1 80 3 2440102 2440200 AGGTACCACCAGCTATACCA 60 2440243 2440261 TCTGCCCACATCTAGTGTC 59 NA Rattus norvegicus 81 Gtf2e2 ENSRNOG00000014422 ENSRNOT00000058872 2 1 1 80 16 62114553 62114966 GACCAAAGAAAGTGGCCTC 59 62114491 62114512 GTTCATTGTGAGTCTTAAACCG 58 NA Rattus norvegicus 81 Sfrp1 ENSRNOG00000017783 ENSRNOT00000024128 1 1 1 95 16 73410297 73410316 GCTCAAATGTGACAAGTTCC 58 73405376 73410239 CACACTGTTGTACCTTGGG 58 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 1 1 1 66 16 75428801 75428819 TCTGTCTCCTTTGAAGGCC 59 75428846 75429449 GCTTTAATGGCCATCCTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Adam32 ENSRNOG00000025728 ENSRNOT00000038266 1 1 1 80 16 71928771 71929309 TCACGATGTATCCCAAGGAC 59 71929352 71929370 ATATTCCCAGACTGAGCCC 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 3 2 3 116 3 80677319 80713739 GAAGACTCCCTGAGGAGGA 60 80713818 80718418 AGCAGGAGATAATCTCGCTG 60 NA Rattus norvegicus 81 Myom2 ENSRNOG00000011754 ENSRNOT00000015908 2 1 1 80 16 79633204 79633224 TTATCGTGACTTGGAAACCAC 59 79631670 79633162 TTCCCACCTCACATTTGTC 58 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891,ENSRNOT00000020181 1 2 2 80 16 71026691 71026711 GGTACTTTGAAATCACTGTGG 57 71026753 71026991 GAAGGTTACCTAAGGGCTG 57 NA Rattus norvegicus 81 Pex14 ENSRNOG00000013498 ENSRNOT00000018167 1 1 1 80 5 165788511 165788529 CCAGGAGCTACTGAGACAG 59 165785818 165788467 GTTGATGTGGTAGCCTTGG 59 NA Rattus norvegicus 81 Ddhd2 ENSRNOG00000015501 ENSRNOT00000020832 2 1 1 80 16 71109283 71109302 TACAGGAGAAGCCCATTGAG 59 71109342 71118461 TATCTTCAGATTCCCAGTAGCA 59 NA Rattus norvegicus 81 Pla2g2f ENSRNOG00000016798 ENSRNOT00000022559 3 1 1 88 5 157194942 157195757 ATGAGATGGACTGGTGCTG 60 157194872 157194891 GTCATAGTGGTCCACGTAGG 60 NA Rattus norvegicus 81 Adam18 ENSRNOG00000017683 ENSRNOT00000023805 2 1 1 80 16 72166766 72166787 TATGGGATCTGACATTATGGCT 59 72166826 72167041 TTCAGCTGAGTGAACATAGTG 58 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 1 2 2 80 5 150514397 150514416 TCTACAGGATGTTGTGCAGG 60 150514196 150514354 CCAAAGGAGTAGACCTGGC 60 NA Rattus norvegicus 81 Olr845 ENSRNOG00000048481 ENSRNOT00000071002 2 1 1 80 5 69246694 69247228 CTTGTGAGGTCTTAGCTGTC 58 69246633 69246653 CCATATTTGATATCGCCATGG 57 NA Rattus norvegicus 81 Rrbp1 ENSRNOG00000005958 ENSRNOT00000055602 1 1 1 80 3 138062630 138062649 CAGGAAGTCAAAGAGAAGGG 58 138062440 138062590 CTTTGAGACTATGTCCAAGGAG 58 NA Rattus norvegicus 81 Rbm38 ENSRNOG00000006420 ENSRNOT00000008764 1 1 1 110 3 171038196 171038214 TTTGGAGACATCGAGGAGG 59 171038813 171038831 TTTGCAAGCCCTATCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 3 2 3 84 3 153451936 153451955 ACAAAGATCCAGGTTCAACC 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Brf2 ENSRNOG00000012739 ENSRNOT00000017324 1 1 1 86 16 69092362 69092381 CAGATAGTGAAGCTTCTGGG 58 69092430 69093448 GAACAGTTTGAAGCTGCTG 58 NA Rattus norvegicus 81 Defb50 ENSRNOG00000033972 ENSRNOT00000046156 3 1 1 97 16 75249859 75261954 TTTGTCAAAGGTGTTGGCA 58 75249780 75249798 TAGAAAGGGCAATTGTCGC 59 NA Rattus norvegicus 81 Fnta ENSRNOG00000014462 ENSRNOT00000019594 3 1 1 80 16 70844380 70846090 TCAAGTTTGGCACCATAGGA 59 70846132 70846151 AGGATATCGGCGATGAACTC 60 NA Rattus norvegicus 81 Defb52 ENSRNOG00000038129 ENSRNOT00000043486 3 1 1 80 16 75574261 75574378 ACTTCTTCAACAACGATTACGG 59 75574416 75574437 GAGTACAGTTTGTTCTCCTCCT 60 NA Rattus norvegicus 81 RGD1307752 ENSRNOG00000020317 ENSRNOT00000027539 3 1 1 80 3 152942412 152942430 ACGAGGAAGAGTATGGTGG 59 152942472 152943271 TCCAAATGACCATGAACAAGG 59 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547,ENSRNOT00000084299 3 2 2 80 3 66857330 66857351 ATCATAATTTGGTCCATGCAGC 60 66846641 66857289 TGAGCCAGTGCATGATACC 60 NA Rattus norvegicus 81 Wfdc5 ENSRNOG00000013760 ENSRNOT00000018386 3 1 1 81 3 160569110 160569129 CAAACAGTGTCCCTCTTCCT 60 160568957 160569067 GCCCAGCTTTACAAAGACTC 59 NA Rattus norvegicus 81 Zgpat ENSRNOG00000014235 ENSRNOT00000019084 2 1 1 80 3 176879229 176879247 TACTACAGACTGGCTCTGC 59 176879289 176879543 CATTGTCCACATCAGTGATCC 59 NA Rattus norvegicus 81 Gins4 ENSRNOG00000018040 ENSRNOT00000024301 3 1 1 81 16 73589722 73589740 CAGTATCCACCGAATGGAG 57 73589781 73592748 CTTCTCTATCTTCATGAGTCGAC 58 NA Rattus norvegicus 81 Cars2 ENSRNOG00000014526 ENSRNOT00000019993 2 1 1 80 16 83297961 83297982 CTCAGATCATCTCTTTCATCCA 58 83298021 83303361 AATCAAAGTAGACGCTACCTG 58 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803,ENSRNOT00000089065 3 2 2 83 3 64312321 64338475 CGCTTTAACTCGGATAGCC 59 64312256 64312274 TTTCGTTGCCTCTAGAGCT 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095,ENSRNOT00000023352,ENSRNOT00000079096,ENSRNOT00000043170 1 4 4 80 16 81849257 81849275 AGAAGAGGGAGGAGAATGG 58 81849003 81849215 CAACAGCAGTCATATTCAAGG 57 NA Rattus norvegicus 81 Sp9 ENSRNOG00000028187 ENSRNOT00000030460 2 1 1 79 3 59983405 59983423 ATCTCCAAGGTGCATACGA 59 59983466 59983484 TTGTACCACGACTCGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sp9 ENSRNOG00000028187 ENSRNOT00000030460 3 1 1 80 3 59983404 59983422 CATCTCCAAGGTGCATACG 58 59983466 59983484 TTGTACCACGACTCGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 3 2 2 80 3 151351163 151352786 TCAGCAAGGAAGGATATTACAC 58 151352827 151352845 GCTCCACACTCAGTTTCTG 59 NA Rattus norvegicus 81 Zfp964 ENSRNOG00000042504 ENSRNOT00000066776 2 1 1 60 16 21472682 21472702 GGATGTCACAGTAACCTACAG 58 21472642 21472661 ATACAAAGGGTCTGTCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd2 ENSRNOG00000013102 ENSRNOT00000017829 3 1 1 80 3 2621641 2622512 CAGACATGGACTGAACTTCAG 59 2622553 2622572 TATGAACATGGCTACAGCAC 58 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 1 2 2 81 3 176445751 176445769 GTGGATTTGACCCATTCCC 59 176444802 176445707 TATGCAGGCAAATATGCCTG 59 NA Rattus norvegicus 81 LOC100909545 ENSRNOG00000049613 ENSRNOT00000071681 2 1 1 80 3 160649451 160649470 TGAAGTCCATCTTCTTCAGC 58 160649162 160649409 TTGTCCCACCATAGATTCCT 58 NA Rattus norvegicus 81 Rtfdc1 ENSRNOG00000005083 ENSRNOT00000006884 3 1 1 80 3 170448078 170448098 CCCAGTGGAACTACTGTACTC 60 170448138 170448739 TGTTATACAGTCTGCCAAGCT 60 NA Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 1 2 2 80 16 82999370 82999389 GCTGCTACCATGAGATACAC 58 82993845 82999327 AGAGATGTCACAAACTGCG 58 NA Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000089329,ENSRNOT00000068416 2 2 2 80 16 82224386 82232085 GAACATGCCAGAGTTCTCC 58 82232128 82232147 TGCATCTGATGGATGAAGTG 58 NA Rattus norvegicus 81 LOC685135 ENSRNOG00000030778 ENSRNOT00000044934 1 1 1 61 16 48513582 48513600 GTGATTAGCAAGGCCACAC 59 48513625 48513643 GGCACGTTCCCATTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685987 ENSRNOG00000047590 ENSRNOT00000075746 1 1 1 80 8 42120176 42121143 AGCAACATCTGGATAACACC 58 42120115 42120135 TATTGCTGTTTCTCCTCTAGC 58 NA Rattus norvegicus 81 LOC685987 ENSRNOG00000047590 ENSRNOT00000075746 2 1 1 80 8 42120177 42121145 CAAGCAACATCTGGATAACAC 58 42120117 42120135 TTGCTGTTTCTCCTCTAGC 57 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 1 2 5 90 X 22291377 22291395 CAGTAGTTCCCTGCGAGAC 60 22291918 22292523 AACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 2 2 5 91 X 22291377 22291395 CAGTAGTTCCCTGCGAGAC 60 22291918 22292524 TAACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 1 2 2 81 2 52505527 52507204 AATGCCAGGTCTGTAACAG 58 52505464 52505483 TTGGGTTTATCTCCAGTGTG 58 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 1 2 2 80 8 117282477 117282496 GCAAACCAGGAAAGTAAGGA 58 117282767 117282929 GAGCAACAGTTCATCTTTGG 57 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581 1 1 2 80 8 64184107 64185704 CAGCTAACACAAAGGAATGTC 58 64184047 64184065 GGTTACGACAGACCATGTG 58 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000063943 2 1 2 80 15 40528148 40528169 TGCGGAAATAGCTTTAAGAACC 59 40526754 40528107 ACCAAGACTCTGTCAGCAG 59 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204 2 1 2 80 15 40517415 40517433 CATTCGGCTCAGGTATTGG 58 40515605 40517373 CAGAGCTAGTTCCAAATCCTC 58 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 2 3 3 115 2 216496990 216498238 TTCCCAAAGTTTGCATCCTG 59 216496894 216496912 TGTTTAATGCTGCAGGCAC 60 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000091513 3 1 3 110 16 2152015 2158119 CTTTACAAGAGCGCTTGCT 59 2142279 2142298 CCACCACTTTGGTTAGATGC 59 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166 3 1 2 84 8 118118197 118139619 TTTGCTCAGGAGTATCCCG 59 118139667 118139685 TCCTTGTTTGGTGGAGTGG 60 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 2 2 2 82 20 5533011 5533029 TTCCAGGATCAGTCTCTGC 59 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000070912 3 1 2 80 3 109862434 109862455 GTCTCCAATGGTAAAGCCG 59 109862503 109862522 CAGTAGAGCTTCCTCCACTG 60 NA Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000082180 1 1 2 97 14 79461202 79461902 AACATCAGGCCTTCTCCTC 59 79461123 79461141 GTCTTTGGCTCACAATGCC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000052129 3 2 6 80 1 76529338 76530899 TTACTTTCATGAGAAACGGCAC 60 76529279 76529300 ACACTTTATCAAAGGCTTCAGC 60 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000085527 3 1 2 88 5 136683691 136690060 CCAGAACAGAATGGTGCTG 59 136690112 136690130 ACAAACTCGATCTGGTTGC 59 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770 1 1 2 91 5 136677480 136690057 AAAGGGATGCTGAATGGTG 58 136690112 136690130 ACAAACTCGATCTGGTTGC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000091567 1 1 3 80 15 43022247 43022268 CAGAAGATGGAGTCCAATAAGG 58 43022309 43025271 GTGCTTGTCCTTCTCTTGC 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456 2 1 2 80 X 31124185 31124347 AAATGTCAGCAGCTATGCC 59 31124123 31124144 GTCAGTGTCTTTACAATGAGGT 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000057734,ENSRNOT00000082549 3 2 6 85 17 84171263 84171281 AACCTATAAGGCCACTCCG 59 84168274 84171217 TATAATAAACCGCACTCAGCTG 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000082549,ENSRNOT00000068553 3 2 6 80 17 84236548 84236567 CTGTATAAGGACATGCCTGC 59 84230282 84236507 CTTATAGGCAACCTCACTCTG 58 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 2 2 3 80 13 26010249 26010267 AATTGTGGTGTAAGCGGAC 59 26010311 26012970 CAGTCTGTAAGTGCCTTGC 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 2 2 2 80 18 28850547 28856228 ACTCTCCTGCAAATGTCCA 59 28850485 28850504 GGATCTGGCATGTACAATCG 59 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000084214 3 1 2 85 12 51961561 51961580 TTGGACATTGAAGAGGAGGA 58 51961627 51963151 CCTGTCACAACCTTTACCTC 58 NA Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 2 2 2 74 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882503 100882798 TGTTCAATGGTCTCTTTGGT 57 NA DesignRelaxed Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014030 1 1 3 81 4 156411641 156412382 TAACTCTGAGGGCACATCG 59 156411578 156411597 AAATTCCACCTGAAGAGCAG 58 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990 1 1 2 113 1 222528283 222530206 GTTTGCCAGAAGGAACCTG 59 222527594 222527612 GCCTCCCGAAATTCTTCCT 60 NA Rattus norvegicus 81 LOC100359907 ENSRNOG00000050047 ENSRNOT00000071955,ENSRNOT00000090234 1 2 2 81 14 7029552 7029573 AGATTTAACTTGTACCCACCAC 58 7029615 7030604 AAGGAATCGGGATCAGAGG 59 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 3 2 2 81 6 21988516 21989624 ACAGAAGGACAGAAGGAGTC 59 21988454 21988472 GCCACGTAATCCAGTAACC 58 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000084662 1 1 2 81 2 148765601 148774438 TTGTCTTAGCTCTGGGTACAG 59 148774481 148774499 CTCAATGCGGATGTCTGGA 60 NA Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 1 1 1 60 4 200781 200799 CCATACCTGAAGCTGTGGA 59 208551 208569 ACAGTGAACACCATCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218 2 1 2 82 13 88725555 88868191 GAATCCGGTATGAGTTTAAAGC 58 88725494 88725512 AATCACTTTGACACCGTCC 58 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000022705 2 1 5 89 17 39413207 39413227 CGGAAGCATTTAACAGTGCT 59 39413276 39414092 AGAATTGGTTCTGGAAGAACTC 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000087153 2 1 4 92 1 216566192 216575289 GGAAGACAAGGGAGACCAG 59 216575345 216575363 GCCTCGTATTCCTCTTCCT 59 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000090211 2 1 2 111 3 146982029 146983296 ACAGATTGCACTTGCAAGC 60 146983367 146988570 TCTATTATCACTAGGAGCTGTGC 60 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882 3 1 2 82 18 31812385 31820030 CGATAATGTTCACCCGTCTC 59 31812322 31812341 CGTAGTTCTCTGGGATGAGG 59 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 2 2 2 85 17 38712538 38713747 AGTTCCAACTGGAAGTACTACTG 60 38712475 38712493 CATTTCAGCCCACAGATGG 59 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 2 2 2 80 1 83210490 83210508 TTTCTCCAATGGGTTTGCC 59 83210552 83210737 ACACCTCAGTGTTCTTGGG 60 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 1 3 3 80 2 188198532 188198553 GATGAAGAAGATGAACTGTCCT 58 188198592 188200371 CAGTTTCTCCATTGTTTCCTG 58 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000022203 3 1 2 86 17 15852661 15854041 TACACTTGATCAGACCTACTGTG 60 15854085 15854105 TCTACTTGTTGCTCACTCAGG 60 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000067129 1 1 2 118 5 24589418 24589437 CTAATCTTAGCAGTGTCCCG 58 24578513 24589340 GTCTTTCAAACACTGGTAACCT 59 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 1 2 2 117 2 188657364 188657382 TTCGAGTTCTTGCCTGGAG 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849 3 1 4 131 9 117636826 117636844 GTACCATACGCCCTCACTC 60 117636937 117647721 CTCACTGTCAGTCTCTTCCTC 60 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 1 2 2 80 9 9730273 9731765 ACAGGAGAAACTTAAGGTAAGGG 60 9731805 9731823 TAGTACCGCTTCTTGGCAG 60 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 3 2 2 81 12 19520752 19525973 CATGAGAAACATGGCCCTG 59 19526017 19526036 TTGGTGGTAGAATCCAGAGG 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 2 2 2 84 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351302 18351320 TCATAGGAGGCTACCAGCA 60 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326 2 1 2 89 1 177183923 177183941 ACTTCAGTAAGGATCGGCC 59 177183994 177187238 TGTATCAGAGCTGCTGTCC 59 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384 2 1 2 80 1 190596348 190596367 CCTACCTCCAGATTAGCCAC 59 190591275 190596307 TAATCAGAACATCACCTGGCT 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660 3 1 2 111 17 14521278 14521298 AACCATATTAGAGCAGCAAGC 59 14521371 14521647 CATTAAGGCATGGCTGCTC 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000071469 3 1 2 84 17 14521288 14521306 GAGCAGCAAGCAGAATGAG 59 14521350 14521624 TCTCCAGTTTCTCTGTATCTGTG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481 3 1 2 85 14 104489460 104492915 TTAGGTTTGCGGATGACAC 58 104492963 104492982 CCCGTCTAGCTCTATAGTCC 58 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092,ENSRNOT00000083124 1 2 2 80 11 60546931 60546953 GGAATTCTTCATCCTTCTTCTGG 59 60536370 60546891 ACTCTGCATTCTTCACCGA 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 1 2 2 80 15 41316182 41316200 GCATTCAAGGTCCTACCTG 58 41315814 41316140 ACTTGCTTTACAGGACAAGTG 59 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524 1 1 2 80 2 173692056 173692077 CAGATACTTTAAGGAAGAGCCC 58 173676198 173692015 ACAGCTTTCAAAGTCTCGG 58 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524 2 1 2 80 2 173744077 173755184 CTGTAAAGGTATGGGACTTTAACG 60 173744020 173744041 TCTGTGAAATTTCCACAACTCC 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470 3 1 4 99 6 8219160 8219179 TGAAGGGATTACTTGTCCCA 58 8219240 8249808 AGTAACGAATCTGCATGACC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 2 2 2 80 9 53475060 53475081 CTTTCAGTCCATGGTCAATTCC 60 53465072 53475020 AGGAAACAGTCCTATTCCCG 59 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242 1 1 2 80 3 51750108 51751037 TCATTCCAGGCCTGAAGAC 59 51751081 51751099 ACACGGTGAGGATCATGAC 60 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 1 2 2 80 9 9994156 9994259 AAGGTATTCATGCAGGTCCA 59 9994299 9994320 CCCTTCTTGAACCATGTTTCTC 60 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000068493 1 1 2 98 10 56650280 56650298 TCATCATCCTTGGACCCAC 59 56650360 56650682 TAGGACGTGTCGTATGAGG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000082719 1 1 4 87 17 43524239 43532904 CCATGTCAGGAAGTATTGGT 57 43524171 43524191 CTACTTATCCATGGGTGAGAG 57 NA Rattus norvegicus 81 Pde6g ENSRNOG00000046962 ENSRNOT00000074354 1 1 2 85 10 109621047 109621529 CCTGGGAACAGATATAACCGT 59 109620982 109621000 AGATGATGCCATACTGGGC 60 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 2 2 2 81 6 102357187 102363480 CTAAGTGGAAGTCATTTCAGTGAC 60 102357129 102357148 ATAGCCGTCTGGCTATTGTC 60 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000056818 1 1 2 80 8 96051243 96051261 AGACATACTGCTTGGACGA 58 96050217 96051202 CTTCAGCAATTCTTTGGATCTC 58 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 1 2 2 80 19 19699994 19700787 AATGTACCTTGCTGAACAAGTG 60 19700827 19700846 TGTATGCTTACAACATCGCC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000082254 1 1 6 84 1 282672599 282681972 TTCTTCAGCACTGGAGATGAG 60 282682018 282682036 TATTCTGCTGGACCCATCG 59 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994 1 1 2 81 7 9750427 9826057 CTGGAAGACATGAAAGCATCTC 60 9750367 9750385 CTGGATAAGCCGTTGAGCT 60 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000082359 3 1 5 126 4 22376160 22376178 TAGCACCAAAGAGGCTCTG 59 22375407 22375429 GCAAGCCTCATTTATTATGGCA 60 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998 2 1 2 146 7 115908653 115908671 ACAGACACAGCAGATCCAG 59 115908282 115908545 TCACTGGTATGAATCACTGGG 60 NA InUTR Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 2 2 2 80 1 100856286 100856304 TGACCTAGATGGGACCCTC 60 100856347 100856451 GGGTACAGAATCCTCCAGTC 59 NA Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 2 2 2 80 5 16913699 16913717 AACAACCATGGCCATTTGG 59 16909787 16913657 ACTTGCACAATAGTCTGACAG 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 85 12 7464298 7464316 CTGTGTCTTGTCGAGACGA 60 7464365 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 2 1 2 80 2 60562465 60562485 TCAGAAAGAAGTGGAACTCCA 59 60561384 60562425 GGAAGACACATCACTCAACTG 59 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000049812 1 1 2 137 1 222734015 222734033 CTCAGTCTCCGTCAGTCTC 59 222686578 222733914 AAATCAGATCATGCACCGC 59 NA Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 1 1 1 63 2 54962580 54962598 TGCTCATCTGCTCCATTCC 60 54953380 54953401 ACACTTGGCTGATATAACTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000088322 2 1 2 80 10 29034069 29034089 GATGACCAGAGGACTGGAG 59 29034133 29034152 TCTTCATCAACTTCTGCAGG 58 NA Rattus norvegicus 81 Kndc1 ENSRNOG00000027240 ENSRNOT00000034426 2 1 1 80 1 212270032 212270297 GTGCAGCCATTCCTAAAGTC 59 212270338 212270358 CCTGGACATAATTGGGTAGGA 59 NA Rattus norvegicus 81 Jarid2 ENSRNOG00000045918 ENSRNOT00000070962 2 1 1 80 17 20194149 20194168 GATGGAACCTCACTGTTCTC 58 20193480 20194106 AGGGAATAGTCACTCCAGG 58 NA Rattus norvegicus 81 Calml4 ENSRNOG00000038202 ENSRNOT00000009716 2 1 1 80 8 67760473 67760491 GGTTACATCATGGCGTCTG 59 67760533 67764934 AAGCTCATCCACTTCTTTGTG 59 NA Rattus norvegicus 81 Naa20 ENSRNOG00000010523 ENSRNOT00000014046 3 1 1 80 3 140123959 140123981 GTTATAGTGTCTACAGGACAGTC 58 140124020 140124436 TCCTCATATCGTAGGCATCC 59 NA Rattus norvegicus 81 Stx5 ENSRNOG00000018847 ENSRNOT00000025664 3 1 1 81 1 224949048 224954933 ACAATTCAGAGGATTGACGA 57 224954975 224954995 GGAAGTACTTGAGGATCTCTG 57 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 1 2 2 80 9 61954438 61956559 GATTCCTCGTTCTAGTATAATGCC 59 61954381 61954405 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 1 2 2 80 2 196296204 196296224 GAGATCCTAAGGACCTTGAGC 60 196296265 196296487 CAGCATGTTCTCAGGATCCA 60 NA Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 3 2 2 81 1 165676937 165678510 GAGACAGAGCTCCATCCTC 59 165676874 165676892 ATCGTGGTAGTAACCCAGC 59 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 2 2 2 80 4 79895954 79895972 ATTAGTGGAAGCGTCACCC 60 79896014 79906819 ATGACACTTGACAAACACCTG 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000058524 1 1 4 82 3 57572034 57572054 TGGAAGAATACAGCAGAGGAC 60 57570344 57571992 ACAGCCAACCTCTAGTATTCG 60 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725 2 1 2 81 8 111714347 111715027 CTTGAGAAAGATCCAGTGGC 59 111714285 111714303 CAAAGAACGGTTGAGTCGG 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810 2 1 2 91 8 48721512 48721530 CTGTTGCTGCTCATGATGG 59 48721585 48722124 ACCAGGATCCAGATCTTGG 59 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000047657 3 1 2 101 10 94954950 94954969 TTGTTACTGTCGCTGTTGC 59 94958139 94958157 CAGAGTCTTTCCTGTGCAC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000083413 2 1 9 129 20 2088057 2088288 GTTAAGCCGCTCAGTAGTC 58 2087653 2087964 TTGTACGCTTTCAAGTGCT 58 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000084180 3 1 2 80 17 45510466 45510487 ATCTACAACTACGAGCTCTGTC 60 45510528 45510550 GACAAAGAGGACGTGTCCT 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000046246 2 1 6 80 6 4311885 4314973 GAAGAGGAATGAAAGGTGGC 59 4307811 4307830 CTCTAGCATGGACCTTCCTG 60 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000084388 3 1 2 80 4 115181588 115181607 GGTGTTGAACATCAGTGAGG 59 115181169 115181547 CTCATGAAGGTGTTTACCTGC 59 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 2 2 2 80 7 116420178 116421067 AGAAGTTGTTGTGAGCTCTG 58 116420117 116420135 GGTGTTTGAGGACTCTTGG 58 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000072970 2 1 2 80 10 49008251 49008269 ACACGACAATATCATCGCC 58 49006911 49008209 AGTACCACGTAGACAGATCTG 59 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 2 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696271 26696289 TCTTTGTCTCTGCTGTCCT 58 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 2 2 2 83 2 144560375 144560393 AACTGAACGACCAGTTGGA 59 144560438 144560537 ACAGTCTATCTGAAGGGTTCC 59 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 2 2 2 84 9 5323395 5329140 TTTACCATGACAGCCACCT 59 5323329 5323347 AAGCTAGACCACAACCTGG 59 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 3 2 2 80 10 40563925 40565132 CCAGTTCATTGTCCAGAGGA 60 40565174 40565193 CCAAAGAACAGAGGGTAGGT 59 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 3 1 1 60 X 48196957 48196977 ATTCTTGAGCAAATGGATGGG 59 48210298 48210316 ATCTGGTTCCTTTCCAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 2 2 2 80 4 79954626 79954644 TGCCTATGGCATCATGGAG 60 79953011 79953102 CTTCCTCCCTCGTCTTGTG 60 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000087194 1 1 2 97 9 66902393 66903408 GTAGTCCTCCAGGTGTCTC 59 66903469 66903487 AAGACTGTAGCTACTGGCG 59 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073 1 1 2 80 16 19389607 19389704 GACAAACTGAAAGAGGCTGAG 59 19389547 19389567 CAGGTCATCGATTGTCTTCTC 59 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889 2 1 2 85 10 40920161 40953421 TATTCTTCAGCCTTGCTGCT 60 40920095 40920114 CTTATCCAGGAAGTCCGAGG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861 2 1 5 81 X 64273629 64273648 GAGCTTGTGAGGTTCTTCAG 59 64273000 64273586 GAGCAGAGTTGACACATGTG 59 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000079999 1 1 3 80 9 10624629 10624652 GATCAAAGAAGACAACCACCAC 60 10624693 10624711 CAGCTGACACCCAGATCTC 60 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539 3 1 4 85 7 64707814 64709218 TAACTGCCTCAAGTGACCAG 60 64709265 64709284 CTCATCATGGCGGAATTTGG 60 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 1 3 3 82 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332,ENSRNOT00000017322 1 2 5 80 1 20899195 20901168 CATATGAGTCTCCACAGATTGAC 59 20899137 20899157 ACTCAGATGTGATGGTTTGTG 59 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000042524 1 1 2 80 1 166342504 166342525 CTGTTTCTACAAGAGAATGCTG 58 166342564 166351182 TTGTCGACTAGTATCACTGTC 57 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833 3 1 2 80 3 163813032 163813054 CTCACTTATTCTCTAGTGGGAGG 60 163808758 163812995 CTTCTCCATCTATAGGACTGGG 59 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000012162 2 1 2 81 8 111567384 111567404 AAGCTCAGAAGCTTCTAAGGA 59 111569648 111569668 CATGAGCCTGTCTTGTGAC 59 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312 1 1 2 81 3 111444240 111450082 ATTCCACTGCAGGAAAGCT 60 111450127 111450145 AGGGTAACTCTGCTCACAC 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000033068 1 1 3 80 9 65113387 65117755 CGTAAGGAAAGTTCTCCATCTG 59 65117796 65117814 GAGATCATCACAGTGCAGG 58 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000088720 1 1 2 80 6 72418166 72418184 AGTGACTGCAGAAGATGGT 59 72399415 72418122 AACGTTATTGGTTCAGCCC 59 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210 2 1 2 106 12 6931958 6931979 GAGACACATATCGTTATTTGGG 57 6931397 6931891 ACTTCAATTCCTGACACGG 58 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915 2 1 5 80 7 120768817 120769850 GTACTTAATGAGTTCCGGTCTG 59 120768758 120768778 TCTATACAAACCTAGCCCACG 59 NA Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 2 2 2 80 3 82751601 82751622 ACAGAATGACATGCTTCATGTG 60 82750570 82751560 ACTTCTTTCCGGAGGAACC 59 NA Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 3 2 2 80 8 107898583 107898603 GAACAAGCCAGGCTTATTGAG 60 107902421 107903110 CACCTCTTGGACTTCCTCC 59 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964 1 1 2 80 4 10460324 10466098 CTCAACCTTGGCTACTTTGTG 60 10460264 10460282 GATCAAGTCTGGATGCCGA 60 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237 2 1 2 80 15 51304028 51304047 TGTTGGAGGCTATTAGTCCT 58 51315373 51315393 AGTAGATGTTGTCCAACCAG 57 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000009687 2 1 2 81 3 79605480 79605498 CTGGAACAGAGGAGGACAC 59 79605539 79605670 GCAGTAGAATCAACTGAACTCTG 60 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517 1 1 2 80 9 12641910 12641929 ATCCGAGTTCACCAGTTCAG 60 12641966 12643927 GGTAGTTAACAGTTGTATAAGCCTG 60 NA Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000079707 1 1 2 85 13 48689968 48690255 CTTCCTAGCAGAAATAGGAAGGT 60 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000066823 2 1 2 80 1 224937974 224938440 AGAGCATAAGGATGAGCCC 59 224938483 224938502 GCCCAAAGTTCATCTGTCTC 59 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282 1 1 2 80 1 224938158 224938437 GGGATAACTGGGAGGATGAG 59 224938477 224938498 AAAGTTCATCTGTCTCTGTGTC 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000034784 2 1 4 80 14 22433568 22484546 ATGACATCCTGGGTCATCC 59 22484587 22484608 CATGATAGATGGCCTCATAGAC 58 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 3 2 2 87 14 104274953 104274971 TTACTTTCCAAAGCCCTGC 58 104275017 104277350 GAGGTTGTTGAACCTTCTATAAGG 59 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 1 1 1 60 11 65960426 65960446 TATCTGCTTCAGTACAACGAC 58 65965160 65965178 GAATCAAGGCAGGATCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064395 1 1 4 82 3 111716588 111720127 TGCTCTTCAAGAAGGTGGA 59 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919 1 1 2 114 10 65021766 65023167 GCTACCAAAGAAGCTGCTG 59 65021079 65021097 TGAAGATCGCTGAGGACAG 59 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005446 1 1 2 80 18 41363697 41363715 TGAGCAAGACATAGAGCGT 59 41361007 41361145 GTTGAAATGTCATTCAGTGCC 59 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 3 2 2 80 8 114333013 114333033 TGCTCAAATGATGGTACAGTG 59 114333074 114337509 TGTCAGAATAGACCTCGTCG 59 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 1 1 1 60 13 50741385 50741403 GCTGGAGACTTCAAAGGGA 59 50740460 50740478 AGATGGAGTTGCTGGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254 1 1 2 80 1 214602451 214602469 TGGTAACAAGACCTCCACG 59 214602510 214603723 AGGTTCAGATTAGTCTGAAGGT 59 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000085125 3 1 2 80 1 214602697 214603736 TCTTTGTTTGCTTACTAAGCCC 59 214603775 214603795 ATACACTCAATGTTGACCACC 58 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 2 2 2 80 3 7121472 7121490 AAAGCCTCACCTACTGCTG 60 7121532 7122253 ACTTTCTTGAATAGCTCTGCG 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 3 2 2 80 3 7126637 7127766 TACAAGAGCATCCTGGTGAC 60 7127806 7127827 CTCATCTAGGTTGTGTTTGTCC 59 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000081104 1 1 2 80 7 134482358 134482514 GCTCGATTGGTATGGTCTG 58 134482296 134482314 TCTTCCAGTCTGTCACCAC 59 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 1 3 4 81 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820458 37820476 CAGCATTGATGGCTTCCTG 59 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 1 2 2 80 16 20337521 20337540 AATGCCTAATCAGCCTCTCC 60 20337583 20339263 CCAGGAACAGCTGGATCTC 60 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 3 2 3 110 2 113833139 113833158 ATAGTGCAGGACACAGAGAC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000080386 1 1 2 80 X 104488528 104488547 TCTCGGTTTCTCCCATTAGC 60 104487784 104488486 ACTCAGCGATTCTCTTTCCC 60 NA Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 2 1 1 61 4 118160262 118160282 GAGAATATCCGGAAGATGCAG 59 118161100 118161118 TTGTCTTCACAGCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151 1 1 2 80 5 17642035 17642056 ATCAGTTATACTGGGTCTGACG 60 17639003 17641996 ACTTAGCATCAAAGCTTGGTG 59 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 1 2 2 80 X 78773177 78773197 CTGGATGCGTCAAATCATCTC 60 78773239 78774491 TGCAGAATGATATGGCCCT 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 3 3 3 85 7 2907679 2907936 CAAGAGCGATGAGATGAATGTG 60 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 1 2 2 82 20 12658145 12658930 GATTGCCTTCCAAGACTGC 59 12658974 12658994 CATAAGGTTTCAGCCTCAAGG 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 2 2 2 80 1 166623814 166623834 CTCCTTATGACCTCCTGTGAC 60 166623876 166624260 TTTGTAGATCAGCTCCGCA 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000085265 3 1 3 80 14 86218587 86219919 GACGGCATTAAGGAATCTTCC 59 86211888 86211906 GATGATTTCCTGCTTCCGG 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000067162 1 1 3 87 14 86218582 86219915 GCATTAAGGAATCTTCCGACAG 60 86217369 86217387 ACCAAGCTCAGGACATCAG 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438 1 1 2 80 6 36091140 36091475 TCTGAGCACTCAGATGAGG 59 36091518 36091537 CTACAGAAGTGGTGATACCG 58 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 3 3 3 80 7 63845460 63845480 CCCTAGGATTGATGTTCAGAG 58 63845519 63851801 TAAACAGTGTTCCCTTCTTAGC 58 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000061644 1 1 4 80 10 1312891 1312914 TAGTTGGAAAGAGAACTCTGAGTC 60 1312780 1312852 CCGGGTCAGATATTCCCTC 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000061644 2 1 4 80 10 1312902 1312920 CCGGCATAGTTGGAAAGAG 58 1312786 1312862 CAGATATTCCCTCTGATTCTCTG 58 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 2 4 4 88 1 24190586 24193406 GCTTTCATGAAACAGAGAAGGA 59 24190134 24190537 TGAACTTCAGGGTGTTTGC 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452 3 1 4 80 1 24215606 24215626 TAATCATGCCAACATCCTGAC 59 24190588 24215567 CTTCTCTGTTTCATGAAAGCTG 58 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 2 1 1 64 9 65789122 65789140 TTCACTGGACTGCAAGGAG 60 65784798 65784816 TGGTGCGTGTAAATCATCG 59 NA DesignNoJunction Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000089460 3 1 2 80 10 16009601 16009621 ACTATTCATACCCAGGATCCG 59 15998608 16000180 ACAATGAAGACTGACCTCTCC 60 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428 3 1 2 96 15 51235270 51245809 TTAAGCCCGATGAGATCCAG 59 51245868 51245886 TTCATGAAAGGCTGGAGGG 60 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000088928 1 1 2 80 15 51240761 51242252 TCACAGCAGGAAGAAGTAGC 60 51242294 51242313 GTACACATGCTCAGTCTGGT 60 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076858 1 1 5 80 X 63806025 63806048 GAGATATCATCCGAGAATACACTG 59 63805593 63805987 ACCAATTTAGCTTCTCCAGG 58 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759 3 1 2 111 10 65495514 65496568 AGGATGATGGTGAGGAGGA 59 65495421 65495440 TCATCCTCCTCTCCTTCCTC 60 NA Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 2 1 1 88 12 2544577 2544595 GGACAGCCATGTGTTTGTG 60 2544426 2544444 AAGAAGGCGTTACTGAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000078816 1 2 3 80 8 49014492 49014513 AGAGGAGATATCATTCGCTCAC 60 49010344 49014451 TCTTGGAGCGGTAAACCTC 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025871 1 1 3 80 18 57755780 57819618 ACTCATGTGCTAAGGTATACAG 58 57819658 57819677 CTCTGGGTCATTGTGTATGG 58 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000088570 1 1 2 80 X 84767704 84768419 ACTAGATAACTGGCTGAAACTG 58 84767079 84767099 TCAAGTATCTGTTCTTGCCAC 58 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 3 3 3 80 4 125704022 125704042 GACTAATGCGGAGAAGATTGC 60 125703821 125703980 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000001667 2 1 2 81 12 16056070 16058168 CTTCATAGCAGCTCACCCA 60 16058213 16058231 GTCAGCATTGTTGTCGGAG 59 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 1 2 2 81 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057334 17057352 CAGGAGATCCTTGCAGGTC 60 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 2 2 2 113 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057302 17057320 TTATCCCAAGGGAACTCGG 59 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 3 2 2 115 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057300 17057319 TGTTATCCCAAGGGAACTCG 60 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000000756 3 1 2 101 20 19373671 19373691 AGAGTCCTGTCTGTGACCT 60 19373588 19373606 CACCTCTCCTCCACAAGTG 60 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491 2 1 2 80 20 19475575 19476811 AGTCTGAGAGCTGTTTGGG 59 19468920 19468940 CGAGTTCGTCTATTTGAGCTG 59 NA Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000035894 3 1 2 156 10 82864257 82864276 TGGAGAATAAGACCACATGG 57 82857124 82858268 AAGAAGTCACACTTCCACAG 58 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000081370 2 1 2 80 3 148654670 148654832 TTGTAGCATTCTGATTTGGTGG 59 148654873 148654891 CCAGGGACATAGAAGGTGC 60 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000079417 3 1 3 111 15 61847329 61856477 ACGACATCACCCTTACAGG 59 61856552 61857676 ATTGTGTTTCCCTTCCCGT 60 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005 1 2 3 110 15 61854503 61856478 GCCCAAGAGAAAGAAGGGA 59 61856552 61857676 ATTGTGTTTCCCTTCCCGT 60 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 3 2 2 80 13 98446638 98446656 CTCTTTGTCATCAGGAGGC 58 98446699 98447064 CTTGGAGAATCAGAGTCCTC 57 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837 1 1 2 80 13 98274775 98274796 AAGCAAATGCGCTTACATAGAG 60 98274837 98311837 AACTACAGCAACCTCACCA 59 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661 2 1 2 81 6 54549982 54550004 GTTAGAAGCAGTCAGAGATAAGG 59 54550043 54550421 AGTGTTAATATCATCACCGGC 58 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 2 1 1 60 14 78973860 78973880 ATAGAGAAGAGCGAGTCTTCG 59 78974150 78974169 CTCAACCAGAATCCATTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 2 2 2 143 15 89288649 89295927 AGGTGTTGTCTACATCTACTGG 59 89288192 89288545 GAAGTTTCAGTGCCTCCTG 59 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266 3 1 2 81 1 187854361 187854392 TTACTCTTACCCAGCACCC 59 187853787 187853806 TCAGAGTACGACATCGATCG 59 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382 2 2 3 80 7 107470597 107479316 CACAACTACAACAGGTTTCCA 59 107479357 107479376 ACAGTACCCAGACACTTCAG 59 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 1 2 3 81 8 107522049 107525333 GGATAAACAGCAGTGTGGG 59 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 78 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 2 2 4 81 5 78373222 78373701 CTTTGTCACGGATGTTCCTG 59 78372664 78372682 CTCTAGCTGGTTTACGCCA 60 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 1 2 2 136 10 29192696 29193600 GAAGTTCAAGGCAACCGTG 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677 1 1 2 94 4 79022008 79025375 TACCGGAGAATTGTTGGTG 58 79025432 79025451 TGTAAACGCATGGGTAAGAC 58 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 1 2 2 80 1 199682750 199682769 AATCCTGCTGACATTCTGGT 59 199682809 199683357 ATTGGTTCTGAACATAGACCAC 59 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331 3 1 2 88 7 24195215 24200502 GCATTCCTAGTGAGACGGA 59 24188816 24188834 CCAGTGAGAAGATGCTGGT 59 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617 3 1 2 81 3 9434568 9448096 CCTAGAAGAAGCCCTGCAG 60 9434505 9434523 CTTGGAGTTCCATCGAGCT 60 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 2 1 2 80 12 11244018 11244037 AGTGAGGCAGTATACAAGCC 60 11244079 11245373 TGTTCATCTTCTTCGTTGGC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000043602,ENSRNOT00000041872 2 2 4 86 6 99180255 99180273 AATGGTGGGACTGATGTGG 60 99179346 99180205 TCTTCTGAGGACCTGTCCA 60 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 1 2 2 82 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322884 214322903 AGTGTGGCTAGGAAGTACAG 59 NA InUTR Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 1 2 2 80 18 58333470 58333489 GAAAGCCAGCATGATGTACC 59 58333531 58333673 TCTATGAGCTTTCCTGCTCG 60 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000031328 3 1 2 120 3 177226652 177227227 ATGTATGTCATCCTCAGCTGG 60 177229091 177229109 CAAGACCAGGGTATCAGCC 60 NA Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 1 2 2 80 9 79649557 79649575 ATCTGAAGCTGGAGATCGG 59 79649616 79652303 ATGTTCCACATACCATCATCTC 58 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 3 2 3 84 3 57837674 57840096 ATTCCGATTTGGGACGAGG 60 57840142 57840162 TATGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000083774 3 1 4 100 3 3168428 3178668 TGACAGAAACCTTACCACAC 58 3178730 3178749 TCATCTGGACCTCTAAGTCC 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 2 4 4 80 12 19963251 19963269 CCTGGTCAACAATTGTCGA 58 19962757 19963209 GCATACAGAGACAGGAATCTG 58 NA Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 1 2 2 90 8 111213744 111213762 TAATGGCTCAGGAGACTGC 59 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 2 2 2 80 18 40096770 40100831 AAGAAACAGAGTGCAATGGAG 59 40096710 40096731 TGTCTTCCAGGATTTCAAAGAG 58 NA Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 2 1 1 60 19 44234649 44234667 GAAGCTACTCCGGAGTTGG 60 44237112 44237132 TGTGTATTTCAAAGTCAGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 3 2 2 81 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041798 177041818 TCTCCTTAAACTTGTCTGCAG 58 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 3 2 2 112 6 1454450 1454468 ACACCAGGTTTCTACGTGG 60 1452779 1454377 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 3 2 2 80 13 105045620 105047219 TATTGCTTTAGGAATGTGCAGG 59 105045561 105045580 CCATTTCCATCCAAGATCCC 58 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 1 2 2 140 4 85560617 85560635 TTGAGATCATTGGCACCCT 59 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 2 1 1 100 10 45534518 45534536 GAAGGTTTGCATTTCCAGC 58 45528691 45528709 ATTGTGGATCTCCTCCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396 3 1 2 101 6 58523801 58542041 TGCATATGATTCAGGCTGC 58 58545000 58545018 GGCTCTTGCTTAATGTCCC 59 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000091263 2 1 2 80 6 58523802 58540097 GCATATGATTCAGAAGTGCCT 59 58540138 58540157 TTCTGTTCTGCTTGGATGAG 58 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000088603 2 3 4 80 12 11234579 11235577 GAAAGCCATAAGCAGAGAACTC 60 11234520 11234539 TTCTTCCACTTCGCAATCAG 59 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655,ENSRNOT00000074608 2 2 2 73 13 91954367 91954386 TTGCAAAGGCTCTTGAAGAG 59 91959732 91959750 CTGATGGCTTCCTGTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 1 2 2 80 X 68630149 68631792 GTGTCACTTGCATTGATGCT 60 68631833 68631853 GAACACTTCTGCAAACTCTGG 60 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000076892 2 1 3 102 13 76994637 76994656 TGATGCACTCCAAAGTAACG 59 76994720 77000121 CAAGGCTGTTTCTTTGTCTG 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000083956 3 1 3 81 7 143451766 143451784 GAAGAACGACCAATCACGG 59 143323596 143451721 ATCCTCGTACTTGGTCCTG 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857 1 2 3 94 12 52362272 52364022 AGATGAAGATGCAGCTGGA 59 52364080 52364098 GAACCCAGAGAACATGCCT 60 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167 3 1 2 81 1 81339695 81339713 TTCCATAGCAACCAGACCT 58 81339758 81341971 TGAAACTCAGGACCTCTGG 59 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 3 2 2 124 17 78493164 78493182 GTGATGGAGAAGAGGAGGC 60 78492250 78493076 TCAAGTTCAAGCTGCTCCA 60 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000015190 1 1 2 97 16 18699811 18699831 CACAAACTCACACGGATGG 59 18704775 18704793 TCCTGCACGTACTGAACTG 60 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000015190 3 1 2 108 16 18699811 18699831 CACAAACTCACACGGATGG 59 18704786 18704804 CAGCACCATTATCCTGCAC 59 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000051927 1 1 2 82 1 48327873 48327891 CTTGTGCTGTTGCTACCTG 59 48318475 48327831 TTCCTAGGTCTCTGCATATTCTC 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298,ENSRNOT00000002030 3 2 3 80 12 25533747 25533765 CAATTACAGCCTTGCCACC 60 25533201 25533706 CCTAGGAAAGGTCTCTTTACGA 59 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000082221 1 1 2 80 1 214477323 214478031 CCACAACAGGTACATACAGAC 59 214477263 214477281 TCAAAGAAGTGTTCCGCAG 58 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 1 2 4 84 15 8920795 8920813 ATGAGCTCTGCGTAGTGTG 60 8914485 8920748 CTAAAGAAACCCTTGCAGCC 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 1 2 4 84 15 8920795 8920813 ATGAGCTCTGCGTAGTGTG 60 8914485 8920748 CTAAAGAAACCCTTGCAGCC 60 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073 3 1 2 60 4 480683 480702 ACACCATCTAGCTGATATGC 57 476989 477007 GTTTGTAGGAGTGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000083127 1 1 2 80 4 130332296 130342638 TTGTATCTCAGTTCTGCAGAG 58 130342680 130342698 TAGCAAGATGCGTGATGTC 58 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121 3 1 2 172 4 130172949 130342633 CTGAAGAGCAGCAGTTCTG 59 130342769 130342787 CTCTGTTGCATGAACTGGG 59 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135 1 1 2 91 3 153441422 153441440 CAGACCCTGAAGTACCTGG 59 153441494 153445299 TGTGCTGTTCTCTTAACTGC 59 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135 2 1 2 92 3 153441421 153441439 CCAGACCCTGAAGTACCTG 59 153441494 153445299 TGTGCTGTTCTCTTAACTGC 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 2 2 2 80 10 109616769 109618498 CAGAACCTGTACTTTAACTGCAG 60 109618538 109618556 TTCCTGGAGGTTGATGCAG 60 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 1 3 3 93 1 254670995 254671013 TTCTGCAACGTCTTCATCG 59 254558984 254670938 TGATCCCAAGGTACCTGTC 58 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429 1 1 2 80 3 150380437 150380456 GCAGCAACTGCCATATACAG 60 150380657 150382549 ATAATCAAACAGCCTGGCAC 59 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 2 2 2 90 17 31495006 31497411 CTTTGTGTTCGGTCAGAGTG 59 31497464 31497482 CACATCCAGGACAGAGTCC 60 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000011432 3 1 3 80 4 23115823 23115844 CTTCTCTTGGGAATCACTTCCT 60 23114482 23115783 CAGTTTGGACTGGACAAACC 59 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 3 2 2 80 8 6057030 6057049 TCAGAATCAAAGGCCAAGAG 58 6056214 6056989 CTGACGTAGATAATAGCTGCT 57 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 2 3 3 81 16 20112540 20112558 TTTCTTCTGCAAGGAGGTG 58 20112602 20112706 AAAGTCTAACGTGATGGGTC 58 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000012943 1 1 2 80 7 143518092 143518111 GGTATTTATGGCAGCTCTGG 59 143518028 143518049 AGGATCCTGTCTTGTTCGT 58 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 2 1 1 60 5 169507783 169507802 AAGATGGAATCATGGATGCT 57 169510108 169510126 TTCACCTTGATCCTCTCCT 57 NA DesignNoJunction Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 2 1 1 62 2 190073944 190073962 AATGGTCACTACTGAGTGC 57 190074150 190074169 TCTTTGAACAAGCTTTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166 2 1 3 103 10 3321589 3342505 AGATATCCACCAGGTATGAGC 59 3356718 3356736 GGCCAGTACATCAGACCAG 60 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366 1 1 2 80 5 74063664 74067012 TCCAGGATACTAATGTCAGAAGC 60 74063606 74063625 GTTTGATTTCCGGCTTCTCC 60 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000006492 3 1 3 80 6 108838019 108838039 TTACCACCTCCAAATGAAGAG 58 108838643 108838828 GTCTTCTGACATCTCACTAGAG 58 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 1 2 2 80 7 70961964 70962146 AGCTCAGATATGGTGTATCCTC 59 70962184 70962205 TACACTCATGGACTCTTCTAGG 59 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 3 2 2 80 7 70961962 70962144 TCAGCTCAGATATGGTGTATCC 59 70962183 70962203 CACTCATGGACTCTTCTAGGG 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 2 2 2 80 3 2937959 2938771 TTGTACCTGAACAGGTGAC 57 2937897 2937915 CATCTCCTTCCTCAACGAC 58 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 2 3 3 80 8 100043154 100043752 AATATAGTCGAGCAGCCCT 58 100043795 100043814 TTCTTCTACCAACTCGTCAC 57 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000055336 3 1 2 147 7 143463667 143463685 TCCTTGGATGTGGAGATCG 59 143462326 143462347 ACTGAGGATCGTGAAGTCG 59 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305 2 1 2 129 12 2145516 2145534 GAACAAGAAGCAACCCAGC 60 2148026 2148309 TGCGGTATCGAATCATAGGG 60 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203 2 1 2 80 3 57021831 57021850 CGAATACACAAAGAGCTGGA 58 57020983 57021791 AGGATATTTCGTATCTGTGTCC 58 NA Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 2 2 2 80 16 6066341 6067218 TAACTTGGAGGCAAGGAAGG 60 6066280 6066298 CCACCAGGACCTTAACGAG 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191 1 1 3 82 10 12054851 12054869 CTGAGCTACACGAGATCCA 59 12054915 12055481 TCACGACAAGAAGGAAGGT 59 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000081958 3 1 2 85 9 82437598 82439124 GTCTGACAAGCACAAACGG 60 82439336 82439354 TTTCCGATCGAGAAGGACC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000091249,ENSRNOT00000008319 3 4 9 96 4 14187110 14188063 TAAATGAGACTGGGACCATCG 60 14188121 14188139 AAGACCATCTCAACCAGGC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 95 4 14186525 14186543 AACATACTGGTCAAGCCAG 58 14187108 14188059 GGTCCCAGTCTCATTTAGC 58 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418 2 2 3 80 1 192234013 192234031 AGAACCACAAATTCACCGC 59 192234072 192316379 GCAAACCTAACCAAATGAAGTC 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 3 2 6 80 4 154715136 154715156 GGAGTCGATGATGAAATCACC 59 154715198 154716014 TTTGGAGACAACAGGTGGG 60 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227 3 1 3 82 1 221802454 221817846 CTGCAGTGAAGAGGAACAC 59 221824655 221824673 CCTCGGAGAACAGTAAGGA 58 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303 2 1 2 80 2 195677634 195678264 AAAGAACTCTATTCAGCTGGG 58 195677574 195677594 GAAGTCTAACTGAACTGGGTC 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 2 2 4 86 13 79042700 79042722 CTGGACGTGAATCAATCTATCAG 59 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297 1 2 3 95 3 2512340 2512358 CCTACAAGCGACACAAGGA 60 2511011 2512283 CACTCTTTCTATCCTGCAGGT 60 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000090739 2 1 2 89 5 107733561 107747670 TCATTGACAGGACATCCCTG 60 107747722 107747740 GTTCAGCCATTGGGATGTG 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799 3 1 2 131 1 267092772 267122327 CCAAGAGGAAATCAGGTGC 59 267092659 267092679 CGATGACATCTACTACCTCCC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719 3 2 3 129 4 33640499 33640519 GCAGTTCTTTGGATTAATGGG 58 33642924 33646242 GCTTCTTTCATAAGCCACAG 57 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310 1 2 3 83 3 146381294 146381312 GATTCTAGCAGCAAGTGGC 59 146380163 146381247 ATCATACTCCAACAAGCGC 58 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 2 2 2 80 1 141641730 141641750 TGTGGAGACTCTGGATAAGTG 59 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972,ENSRNOT00000082402 2 2 4 86 6 109669508 109669526 GTCTGACCATTGTCATCGC 59 109669576 109673378 GGGTTGTCCCTTTGTAGGT 59 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 1 2 2 80 9 17225395 17227329 CTCTACAGCCTGAACTGCA 59 17227372 17227391 ACTCACCACAGATGTCTGTG 60 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 2 2 2 83 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019871 77019890 AGCTGAGTTTCTGTTGACTC 58 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 3 2 2 81 19 52240451 52240469 AGTGGAAGATGCAGACCTG 59 52240513 52242701 TGGAGATGTGACCTCTTCAG 59 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800 1 1 2 83 1 221298892 221298910 TATACCTATGCCCAGCTGC 59 221273785 221298846 AGAGTTGAGAAGCTTCACGA 59 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800 2 1 2 84 1 221298892 221298910 TATACCTATGCCCAGCTGC 59 221273784 221298845 CAGAGTTGAGAAGCTTCACG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000091985 3 1 6 109 19 33932881 33932899 CAAGTGTATGAGGAACGGC 59 33932969 33935002 AGTTAACCAGTGCCTTAAACAC 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 2 4 6 115 19 33932967 33965639 ATGTGTTTAAGCTGTTGGCG 60 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 3 3 3 80 18 56395287 56395307 AGATCATGAGTCATCTCGGAC 59 56395349 56396611 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386 3 1 2 81 4 179904690 179904709 CTTCTGGGTACCTGTTATGC 58 179830715 179904646 CCCTGGATACCCAGAAGAC 59 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000046771 1 1 3 158 14 17549422 17551322 TGATGTGAAACTCGCTAGGT 59 17551442 17552986 GCATTGGTATCCTGTACCAC 59 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 1 2 2 80 1 189171374 189173014 AGTGTCAACCATCTTGCTC 58 189171312 189171331 GTCCTATATCCAGAACCCGA 58 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000000474 1 1 2 80 1 167076956 167076975 CCAAGGTGAAGGTCCTAGAG 59 167077018 167077659 CCTCTAGTTGCTCCACCTG 60 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 1 2 2 80 9 67699615 67702707 TCTCTGAAGCCATACAAGTG 57 67702748 67702768 CATATTCACATGGAAAGCTGG 57 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000081109,ENSRNOT00000089775 1 2 4 81 12 14502269 14505256 CAAGGTTACAAGGTTTACTACTGG 60 14502211 14502229 CAGGCTCAGGGAGAAAGAG 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265 3 1 2 115 8 52803019 52803037 AGCGAAAGCATCAAAGAGC 59 52802792 52802941 TGCAAAGTTAAGGGCTTCTC 59 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000016341 2 1 2 81 3 11321262 11325955 CAGTCAGCAGAGAATGTGC 59 11325998 11326018 CGACACCAAGAAACATAGTGG 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000079156 3 1 2 83 10 67854603 67854621 CATTTGGCCAAGTTGTACG 58 67854668 67855063 GTGTTCGATCTGTACTCGG 58 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910 1 1 3 87 1 247295967 247295985 AGAAGTCAGTGGCGATCAC 60 247296036 247305647 ACTTTCTCCGAGAACCGTG 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 2 4 4 80 5 152682876 152683359 TGGCATCTTCTGATATTCAGGT 59 152683400 152683418 ATCGAGGGCTGAGAATCAG 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 2 2 2 80 3 173867264 173868468 TTAACCAGGAAGCTTAACCAG 58 173868509 173868528 CACATAGTCACTGAAACGGA 58 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000061279 3 1 2 80 7 11002817 11002838 CTTAAGCTAGAGTGTGAGAAGC 59 11002460 11002781 GTAGGACATCTCATAGTACATCAC 58 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554 1 1 2 93 3 94358119 94358138 CATAAGGGTGGACAACACAG 59 94357827 94358063 CCATGTCTGCTGTGAAAGG 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000080509 2 1 2 101 1 266381170 266401898 AGTACAAGGATAAGGAAGCCTG 60 266401960 266401978 CATAGTAGTGGCTGCAGCA 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000035821 3 1 4 81 2 57876738 57933371 GCTGTCATTGTGGGAATGG 59 57876675 57876698 TAGTCATGTAATAGACCACAGCTC 60 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312 2 1 2 86 9 10262539 10272830 TCAACAGCCATCTCCAGTG 60 10272879 10272898 GGTAGTGGTTGTACAGGGAG 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 3 2 2 81 8 5994191 5994410 CATCTGTAACGGTTTCAGCA 59 5994454 5994472 ATACCACCAACAAAGCTGC 59 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 1 2 2 128 1 165886103 165886121 GAGCGATCTTCCTGAGTCC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 1 2 3 80 7 42331546 42332266 TTAGGTCCTGAGAAAGATTCCA 59 42332306 42332325 ATTCCTAAGGGAACTGGCTG 60 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669 1 1 3 87 1 215270232 215271665 AGTCCCAGCAAGACTATGC 60 215266469 215266487 TCTTCAAAGGTGGATGCGT 60 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000090984 3 1 2 182 7 123100631 123101804 TGTAGGTGATGGCAAATGTG 59 123095889 123100489 CAACCATCTCTATCCTTCTCCT 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 1 4 4 80 12 703327 703346 TTACTTACCCTCCTGGTGTC 59 703388 707378 TTACAACCATCTTTAGCCGC 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000001464 1 1 4 80 12 781602 786747 GGAGGCAATCTGAGTTGGA 59 786785 786809 CATCCATACCTAATTTCTCTTCTGG 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282 1 1 2 110 17 69391756 69392418 GTGTCTGTCAACTAAATGGGT 58 69388584 69391686 CCTTCAAATATTCCACCAGCT 58 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000025415 3 2 4 86 1 154442128 154444800 GCAACAATGAATGGCATGC 59 154446188 154446208 ATATCCTATCATGCCCGTTGG 60 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334 3 1 2 108 18 55810036 55810056 GAATATTACCAGCAGCTTGCT 59 55810126 55811808 CAAGGCTGTACTTGTCCGA 60 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000020733 1 1 2 87 10 14249055 14249073 AAAGTCATGGGTGTCTGGG 60 14249124 14249325 TAGTGAAGAGGACCTGGCT 60 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000059349 3 1 3 87 9 50960153 50960171 TTGGCTTATCTACTGGGCA 58 50960221 50960244 ACCAGGAATTTGGAGAATCTC 58 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000066849 1 1 2 80 7 123280377 123280396 AAGGCCTATGGGCTAAAGAG 59 123280435 123280458 TTAGTCAGTCTTCTCCAAGTGTC 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 3 2 2 80 1 84123003 84123021 AGTCATTGTGTCCTCACGG 60 84122126 84122961 GTTGGCATTCATCCACATCTC 60 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 1 2 2 80 12 25500931 25500949 TGCATCCTATTTGGAGCCC 60 25500992 25502891 GTTACATACGGTTCACCTGC 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 3 6 7 85 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920369 102920387 CCATGCAGAAGATCCAGTG 58 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 2 2 3 82 X 120958934 120958958 CTATCACTGTCCATGAAGTATAAGG 59 120958996 120960426 AGGTAAGTAAAGTCATGGCTG 58 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 2 3 3 93 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671231 52675781 TAGTGCTCTTCTCGGTAACAC 60 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000031653 1 1 2 80 12 2213717 2213737 TGAATCAACCCAGAAGAATGC 59 2213778 2214009 TGTGAGCACCTTCACTATGG 60 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109 3 1 4 86 5 141058871 141058890 AAGTATGGCTGTTAGCCCTG 60 141057085 141057874 ATTCCTTCAATTCCGGGCA 60 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 1 2 3 80 19 53638213 53639690 GAAGAACGCAAACAAAGAGTG 59 53639732 53639750 TGCTGTAGAACCTACTGGG 58 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000091346 2 1 3 154 12 11544129 11544147 CTCCCGCTACTATGACAGG 59 11540848 11543581 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 1 2 2 80 2 104050104 104050733 GGCATTTGGTTCTACAGATGG 59 104050044 104050063 TCCACTGCTTGCTTAATTCC 59 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000091890 3 1 2 88 4 163401037 163402334 CATCACCCAGAGATGAGCA 59 163400967 163400987 GCAGATCTTTGTTTCTGATGC 58 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000087474,ENSRNOT00000024793 3 2 5 89 19 43234742 43267700 GGCAATAAATTGGAAAGAGGTC 58 43267750 43267768 CTTCAGTTTGGAGCACCAG 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 2 3 3 60 13 79888255 79888274 ATCTATGCCCGGAAATACCA 59 79888297 79888315 GTTGTATCACCACACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 1 1 1 278 16 20555656 20555674 CGGATACTCAGTCCAGAGG 59 20557588 20557606 TCGTAAGTGCAGTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 2 1 1 279 16 20555656 20555674 CGGATACTCAGTCCAGAGG 59 20557589 20557607 ATCGTAAGTGCAGTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755 1 1 2 86 1 214233968 214234257 TTGATCCCACTCATGATGCA 60 214234306 214234324 GAAGTCTGCTGGTGGTAGG 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000088239 3 1 7 80 9 43709429 43717180 AGGATATTCAGGATGAAGACGT 59 43717221 43717239 GCTCCTGTACCTTCTCCAG 59 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000082856 2 1 2 80 6 122939211 122949219 TTAAGATGGCTTTGGACTTGG 59 122949261 122949279 TTCCAATCTGCACCTTCCA 59 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457 2 1 2 80 5 147257814 147257832 AGGGCTCAGACATTACGAG 59 147257875 147259594 CTTGATGTCATCTGGTCCAG 58 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534 2 1 2 80 10 8654624 8654643 CCTTCTGCATTCTTATGGCG 60 8491781 8654581 GCTTCCTGATTACCCTGCA 60 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068177 1 1 4 80 16 23573525 23600073 GGCCACGTAAGTAATATTGGA 58 23600115 23600133 ATCTCCGCCTTCATTTACC 57 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869 3 1 2 87 12 8197821 8197839 CAGAAGCTAAGAAGCCTGC 59 8190003 8197770 CTCTGCTTTGGGTAACCTG 58 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 2 2 3 108 19 53496515 53504638 CTATGCCAAGCTGCTTCAC 59 53496025 53496045 GATGATGAAGAGTCCATCCAC 58 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 1 2 2 80 1 52444622 52444640 TCTGAAAGTGTTAGTGCGG 58 52424719 52444582 CTTAGGAGATGGTTCATCTTCTG 59 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 1 2 2 80 11 71995451 71996460 GAACACCAGCACTGAACAC 59 71996504 71996522 GAGCAGCATCTTCATCGTC 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 3 2 2 81 14 21998355 21998857 TGGCACAGAAACATCATCC 58 21997903 21997921 TGGCTGTATGCATTCATCC 58 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 1 2 3 87 15 28311303 28311632 AGGGACAGACTCATTCTGTG 59 28311235 28311253 AATATCGCTGGACGTTTGG 58 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102 2 1 2 86 5 27313142 27313160 AGAAACACTTGGAGAGCAC 58 27313209 27386166 CTTCTCGGTACGATCTTGAC 58 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000004753 1 1 2 94 10 46579431 46582804 ATTTGAAGACATGCTTCAGCTC 60 46579358 46579376 CTGTGTCTCCTGTCTCACC 59 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000029757 3 1 2 107 15 48159468 48162441 ATTCCAGAGGTAGATGCCC 59 48162512 48162530 CTTCTCAATACAGGCCTCG 58 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 4 6 115 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566985 3567003 CATAGTCATAGCCTGGCCA 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 4 6 115 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566985 3567003 CATAGTCATAGCCTGGCCA 59 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827 1 1 2 82 4 118871042 118871244 ACAGAACAGCTAGGACTCAG 59 118874560 118874579 GCTTCCTTTCTTGTCTTTGC 58 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 2 2 2 80 19 55446663 55446682 GAAGAAGTGATTGACCACCG 59 55445848 55446625 GATACAGTTCAGGAGACTATTGAG 58 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 1 2 2 106 20 45189544 45189562 CTTTGCCCTCTTCAAGGAG 58 45157496 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 1 2 2 80 2 196511844 196511863 GTATGAAGACATCCTCAGCC 58 196510767 196511802 TCACAGCACCCATATTAGGA 58 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000079845 3 1 2 80 1 15716624 15720737 GCATTCACAGTGGAGATCC 58 15720780 15720799 GCTTGCTAATGACAGGATCG 59 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047 1 1 2 197 3 3657711 3661739 CTTCAGCAGGACTCCAGAG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000090779 1 1 2 92 17 78822723 78826622 GCTGTTCCCAGAAATAATTGCT 60 78826675 78826693 GACCATTTCTTGGCACGAC 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 2 2 3 81 10 46085365 46085383 CCCTCTGCATCCTAACACC 60 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331 3 1 2 90 11 83986364 83986382 TCGCTACACCTTGATGGTG 60 83986435 83987945 AATCTCTGTGTATGCCACCC 60 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858 3 1 2 90 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658842 6659324 CCCTCTCGAAGAGCTTCTC 59 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000067639 2 1 2 82 16 6659380 6659398 AGCTCTTTGAGTCCATCCG 60 6658849 6658869 GAAGAGCTGATCCACAGGG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000078583,ENSRNOT00000091677 2 2 8 81 6 64794400 64794463 CTATGACGGCATGGTACAG 58 64794507 64794526 TACAATATTCTCCCGTGGGT 58 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000004776 3 1 3 86 14 21127747 21127765 TGGATGGAGAATGGCTCTG 59 21103512 21127703 GATAATTAGGATCTTCATGGGTAGG 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025 2 1 5 113 1 15844721 15844913 GAACAAACCTTACCCACAGAC 59 15844987 15845006 TGTTCTGACTTAGAGCAGGG 59 NA Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 1 1 1 84 1 53562975 53562993 TTTGGGTGATGTGACTGCA 60 53562753 53562771 ATCCTCCATCCTCAAACGC 60 NA DesignNoJunction Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000033806 1 1 2 81 14 20483487 20488297 CAACGACGATTCTGACTGC 59 20483424 20483442 GAAAGGTTGCTGTTCCGTG 60 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 3 1 1 60 4 49372183 49372204 CATGAATCTACACAACAACGAG 58 49378959 49378979 GTCCACAGACATTAACTTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 1 2 7 80 2 186117954 186122499 CGTTATCATGAACACGGCTC 60 186117893 186117912 CTGGATGATTTGCTGCTGTC 60 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000005853 3 1 3 109 13 47589317 47589340 GATGGAGGCAAACACATGG 59 47589572 47589591 TTCTTGGATTCCTCTGGTCG 60 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 1 2 2 86 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078151 84078169 GAGAATGCCTTGTCCAGGT 60 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121 3 1 2 81 1 92091310 92091332 GTGACCAGAACTACAACTATGAG 59 92087491 92091269 GTTTCTCTACTTGGGCTGC 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 1 2 2 82 17 87933920 87956851 TGGCTGGAAAGAATGTTCTC 58 87932530 87932548 TTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 1 2 4 72 13 80440889 80440908 AAATACATCAAGCCCAAGGA 57 80439235 80439253 CATAGAGTTGCTCGCTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000063902 1 1 4 80 13 80441089 80441209 AGCTTAGTGGTGCTTCCTG 60 80441027 80441048 AAGAGATTCATATTCCCACCGT 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458 3 1 2 81 2 244330172 244330193 CTGTTAAATAGCAAAGACCAGG 58 244287536 244330132 GAAGGGAATGGCTATCATAGC 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060254 1 1 10 80 15 32425453 32425474 TTCCTTCAACCTGAAGAAATCG 59 32614125 32806042 GCATTGTTGTTATTGCCCAC 59 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 3 2 2 80 13 82362163 82362184 ATTGTCCTCATTGATCTACGTG 58 82362584 82362705 CTTTGGCAGCTACTAGCAG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000080442 3 1 2 84 1 215215863 215217280 CGGTAAGGCTACCTCAGTC 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 3 2 2 242 X 111122741 111122759 CCTTCGAGAAAGAACAGCT 58 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011 1 1 2 86 7 53648480 53649031 CTACTGTAAAGGGTGCTACG 58 53649080 53649098 TACTGAGCATGAACAAGGG 57 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932 1 1 2 80 13 82753284 82753302 CAAGTGATGCTGCTTACCA 58 82743487 82753241 AGGAATCTGTGTCAATCCTG 57 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 2 2 3 80 12 10781290 10782191 ATTCTAAGCATAAGCACCGA 57 10781229 10781249 TATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 2 2 3 80 12 10781290 10785601 ATTCTAAGCATAAGCACCGA 57 10781229 10781249 TATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000032112 3 2 3 90 4 158244479 158316613 GAGAAGGACTTGGAGAGCA 59 158316667 158316685 TCAAGAACTCTGCTTCCCT 58 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 3 2 2 80 12 22201289 22201307 TGACAGAGCTGATGTTCGA 59 22199503 22201245 CATTTGCAAAGGCTGTGAG 58 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000078675 2 1 2 102 10 51693138 51694150 CCCAGTTATTCATCCAAAGATGAC 60 51693059 51693079 AACTGTTGGACTCGACTTAGG 60 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 2 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473209 AGAGACTTCAACAGCTCCAG 60 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 2 2 2 80 1 221743900 221743921 GAGAAGATGAACCTCTTCATGC 59 221743960 221744083 TGTTTCTGATCTGTTCCACTG 58 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 2 2 2 80 12 15980290 15980308 GGACCTCTGTCCTATCTGC 59 15977434 15980246 GTGTGCAGTCTCTTGTACC 58 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 2 2 3 80 6 129652160 129652180 AGTAGGAGTCAAGAGAACGTC 59 129652219 129655940 TCACTTGTTTCATCCTCTTCTG 58 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837 1 1 2 80 11 84527814 84533118 GACTGTGACAGGTATCATAGC 58 84533160 84533179 ATGATCATGGTTCGATGCAG 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694 1 1 2 80 3 11797852 11798607 TCTTTATCAGCAATACTGGAGG 58 11798648 11798666 TTTCTTCCCTGTCCCTACG 59 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000084590 1 1 2 80 9 93815918 93815938 GTTGTTGCTCGTAATAGAGCC 60 93829735 93845271 TATCCTTGGCTTCCAAGTCC 60 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859 1 1 2 80 15 106272825 106274616 ATTATCGCACAGACCATTCCT 60 106274658 106274676 CTCATCAGCATTTGCCCAG 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 3 2 2 80 3 161413486 161413504 CGACTTATGTGGTCTTCCC 58 161413548 161414007 AGCGGTACAGGTAATCCTC 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080158,ENSRNOT00000080419 2 2 12 102 20 3358362 3358380 GTGGTCGATCCTATACCCG 59 3360455 3360679 CCTTCAGGAATTCTCTGTCAC 59 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000085684 1 1 2 81 7 40245832 40245850 AGCATCTCTGGTACATCCC 59 40245890 40246140 GGTTTCATTCTGAGATCTAAGGAG 59 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 3 2 2 80 13 111159902 111159924 CTAGAATTCTACACAGCCTTCTC 59 111159962 111227051 GAACACAATCCTCTTCCTCAG 59 NA Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 1 2 2 80 7 38919684 38924097 CACACCAATGAAGACTTTCCA 59 38924136 38924157 ATCAAGTTCATGGTCATCACAG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 3 2 3 80 11 80933949 80967267 ACTCTCAGTTAGTCACCACAG 59 80933889 80933909 ATGGGTCCCATACAATTAGGA 58 NA Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 1 2 2 80 10 109107493 109122262 ATGTCTACAAGACCATCATGGA 59 109122300 109122321 GTGCTTTCTCATAGTTCTTCCC 59 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933 1 1 2 80 1 190212117 190212141 CTTCTCTTTCCAAATCATCCTTCTC 60 190212178 190221858 CTCCTTGATGTACCCAGGAC 60 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 1 2 2 80 10 11140944 11140962 CTGTACGAGGTGATCCCAG 59 11141005 11142012 GATAAAGCCCTTGTGAGGGT 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000089801 2 1 2 81 2 189406005 189406023 CAAGTATGAACCGCAGCTC 59 189406066 189406698 GTTGTAGCAACTTTGACTCCC 60 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 2 2 2 80 3 114643050 114643072 CTCAGTACAAGAACAAACGTCTC 60 114643110 114643689 TTTCAGCCTTCACAGAAATCC 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000060179 1 1 3 88 14 22122670 22122689 CTGGTCACATTACAGAAGGT 57 22122750 22124753 ACTCCCTAGATCTCTGATCTC 57 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 2 3 3 80 20 3731249 3731429 AGTCTATGAAAGGCTCCCTG 59 3731188 3731206 AAATAGCGTCGTCTCTGGA 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 1 2 2 83 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555763 208556046 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070 1 1 3 88 10 86383080 86383098 CACTGTACCTTGGGACCAG 60 86383150 86383647 CCTCGAGACCACAATCCTC 60 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826 1 1 2 80 6 128655837 128657953 CCACCAGGAAATCTCAACAC 59 128653894 128653914 CAAAGAGGATCTGTCCTTCTG 58 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000065431 1 1 2 80 19 57103752 57106513 TCTTTGCCCGTATTCAGAG 57 57106557 57106575 AGACGTTGTCTAGGTACCA 57 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016 1 1 2 80 1 273743355 273750855 GAGTGTGGAAACAGACCAC 58 273743293 273743312 GAGTTCCTCATAGCTTGTCG 58 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017413 1 2 3 85 19 9770401 9770419 GTGGTCTTCCTCAGGTGAC 60 9768970 9770219 CAAGTGTGCAATGTAGCCC 60 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829 3 1 2 82 10 51507921 51507939 CTTCAAGTCCACAGTCCAC 58 51503020 51507878 AAAGTGGACAAGATCTGTAGAC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 3 5 9 80 9 81535501 81535519 CAATTCCAAGAAGAGGGCA 58 81535561 81537210 AGATTCCACATACATGGTCTC 57 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 2 3 9 80 9 81545177 81545196 AACACCATCAACCTGATCCA 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763 2 1 3 81 14 34561661 34561680 CCCATTCTTCCTGCTTTGC 60 34561598 34561617 CGAAGACTATGGACCCAGAG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 1 1 3 80 14 34561650 34562173 CGGATACAAGGCAAGAAGC 59 34561588 34561609 GAAGAGTCTCCGAAGACTATGG 60 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000091015 3 1 2 132 13 53149095 53149113 TAGCTCATTGCTGTTTGGC 59 53148269 53148595 AAAGATTCTCTGAACTGGCAG 58 NA Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 2 2 2 80 8 59602957 59604883 TGTGGCTGAAGCAAATCTG 59 59602895 59602913 GAACACGCATGAACTCCAC 60 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 1 2 2 83 4 162185000 162228922 TTCCTCACAGTAAAGTGCG 58 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000077362 1 1 2 80 2 189871154 189871173 TGATGAGACCTCCTTCAGTG 59 189871216 189871547 AGGATAGAAGCCTGCTCAG 59 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000075041 3 1 2 137 10 109964974 109964992 GAGAACTTGCAGAAGCTGC 60 109964466 109964571 TGACTGAAACCGTGTAGGG 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000064007 2 1 2 80 4 56409733 56409754 GATAAACAGCTAAGGAAGCTGC 60 56406872 56409692 TCGCATCACTCTACACTCC 59 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 3 2 2 80 1 72891174 72891615 AGGCAGAAGATGAGGAAGC 60 72894942 72894962 GAATCAAAGGAGGAACCACAG 59 NA Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 3 1 1 61 12 24723514 24723532 AGCATGGGAGGAAAGACAG 59 24723309 24723327 AGTCGTTCCACAACATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 1 2 2 80 15 34457520 34457774 TCATCAGCATCCCATACTCC 59 34457459 34457477 GTTCGAAGCTCATGTGCAG 60 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000086061 2 1 2 104 7 12274813 12275364 GATGATTGTGGCACTGCAG 60 12274727 12274746 CTTAAGTGAGTGTTCTCCGC 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 2 2 3 80 4 161731671 161731690 TAATCTTCTGAAGCTGCTGG 58 161731536 161731628 GGAAGATCCTCAGGATCCA 58 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 1 2 2 80 1 142162684 142162702 GTACCTAATGCTGGACCGA 59 142161673 142162640 ACAGAAATTTGGCTCCTGG 58 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 3 2 2 80 20 27433341 27433359 TTTCAGTGAGCCTGTTCCT 59 27433403 27436559 TTAGTGTTGTGCGAACCTG 58 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 1 2 3 89 X 70565952 70566268 CTTCAATGAATTCCTGTTCCG 58 70566319 70566337 GCATATGTGACCAGGAGAG 57 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210 3 1 2 108 6 28265597 28265615 AAGGAGAGGGAACTGAGAC 58 28265687 28272118 TTCTGTTCTTTGCCCTCTC 57 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 3 2 4 80 9 111210939 111210958 AGAACCCTCACTCTAGTGGA 59 111208982 111210898 CTGACAAGCATATACCCACTG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 2 1 1 61 4 149801038 149801057 GGTGTCCATTGAAGATCCCT 60 149800993 149801011 CAGTAGCTGTGAGCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 2 3 3 80 18 70713729 70713749 GTCATTCTGGTTATCCAACAC 57 70713790 70716118 TTCTGTGTCATGAAACCCTC 58 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 3 3 3 80 18 70713730 70713751 TCATTCTGGTTATCCAACACCT 60 70713790 70716119 GTTCTGTGTCATGAAACCCTC 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 1 2 3 119 9 111244242 111244260 TTTGATTTGTTACGCGCCA 59 111244342 111244704 CATCACGATATTGCCAAGGA 58 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000056439 2 1 3 80 9 111248315 111248335 GCAACTTCTTTATGGAGCTGG 60 111248378 111248402 CTAGCACAGTCCTTGACTCC 60 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127 3 1 2 80 9 100284112 100285267 TCTGCCACAGGTATCAGTG 59 100285308 100285329 CTTGTTGGTCCATGTAGATAGG 58 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000054753 1 1 2 95 1 253242743 253243464 CTCAAGACATCAAGTAAGAGCT 58 253244515 253244536 GATATTATTGATTCTCCCGCCT 58 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000054753 2 1 2 96 1 253242743 253243464 CTCAAGACATCAAGTAAGAGCT 58 253244516 253244537 GGATATTATTGATTCTCCCGCC 59 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 1 2 2 80 18 2064992 2065011 ATGGTTATACTGCCTTGCAC 58 2065054 2065462 TTGCATTTCCCTGATGCAC 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478 2 1 2 81 10 108639165 108639183 AGAGGTACCTTTCCTGGTG 58 108639228 108639428 ATCCACAAGAAGGACCTGG 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000046854 3 1 3 103 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034754 51035432 CCATTCTGAGGCTACCTCC 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000087320 3 1 3 95 13 51034757 51035432 GGAAGGAGCCTCAGAATGG 60 51035490 51035509 AGGAAGAACTTGTCTCCCAG 59 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000017291 1 1 2 80 18 3216682 3216700 TGGCAGATAACTTCTCCCA 58 3216741 3219873 GTTTATCACCGTGTATGTTAGG 57 NA Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 3 1 1 60 X 152109988 152110006 TTAGTGCTCTGCAGTCCAG 59 152108539 152108558 TGCTGTAACTTCATACCACC 58 NA DesignNoJunction Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 1 2 2 81 20 31102606 31142381 CTCAGATACCCTGGACCTG 59 31142426 31142444 GTCAGAGACGTTCCTCAGG 60 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 1 3 3 80 12 25430554 25431721 GAGTCCATGTGTAAAGAGCTG 59 25431761 25431781 AACGACAAACACATCTGTCTC 59 NA Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 2 2 2 103 19 44094842 44094863 CCCTCAGACATCACAAATATGG 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 2 2 2 80 7 130168950 130168970 CTGTTTCAGTCACTCCTAAGC 59 130168807 130168911 CTCATTACAAACTGCTTCCAGG 60 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 2 2 2 80 5 59082951 59082969 ACATACAACCAGAACCAGC 58 59083013 59084296 TTCAAGGACACAATGGCAG 58 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 2 2 2 86 20 32124115 32133340 CAGTTCAAGGTTATCCTGCT 58 32124048 32124066 TCTCCTCAATGCAGTTTGC 59 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 1 3 3 80 15 4039969 4040178 TATCACCAGCTTATTGGATCAG 58 4039910 4039929 TGGATAACTGGAGCAAACAC 58 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 2 2 3 98 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563950 82563969 TCAAGATAAGGACACAGGCG 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 2 4 4 80 1 81793828 81794036 GAGTTCAAGAACCTGGATATCAC 59 81794074 81794094 AGCTTTGTCTTTGGTTAGTCG 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000080840 2 3 4 84 1 81796496 81796515 TAAGACCCTTCCTGTCTCAG 58 81796562 81796899 CATGAAAGGCCTGTCTGAG 58 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000079745 3 1 2 122 2 123279037 123280053 CCAGAGATGTTGAATCACCC 58 123278934 123278953 CCATTTCCCTAAGGTACGTG 58 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454 3 1 2 80 18 6033955 6033974 GGGACCAATACAGTCATGGT 60 6030848 6033916 CGTAATCATTATGACCATCAGGG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 1 2 3 80 18 62852096 62852316 CTATTGTGACAATCGTTTCAGC 58 62852357 62852375 CTGACCGAAACTGGTTCTC 58 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000087220 2 1 3 86 20 34656745 34684323 ATTTCAGCAAGTGTGGCTC 59 34656677 34656696 GGTTAGATGGAACAGCTGTG 59 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769 1 1 2 91 2 198829588 198829606 TACATGAGTACCCACCTGC 59 198829821 198836316 ACGATGAACCTGACTCTCAG 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000011851 1 1 2 112 4 57419077 57436615 CAAGATGCTAATGGCCCAG 59 57436689 57436709 GCCATAATGAATCCCTTTCCA 59 NA Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 3 1 1 60 1 274650339 274650358 AGAAGTGAAGTCGATGTTCC 58 274649625 274649643 ATCTTCCACAGACAACTGC 58 NA DesignNoJunction Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984 3 2 4 80 7 78462378 78482261 ACCATTCGAAGTATCGCTC 57 78482305 78482323 TTACATCACTGTCCGAGGA 58 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 1 1 1 71 7 12420951 12420969 AAGTTTGACTGAGACCCAG 57 12418967 12418985 TATTTCCGGAAGCCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810 2 1 2 98 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858664 47861254 TGCTTAACTGCTTCACGAC 59 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000091129 2 1 2 82 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102342692 102344232 GAGTACAAGGAGGTGAGCT 58 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023574 3 1 2 94 1 205013816 205040516 ATTTGTGAAGGTATCCGCC 58 205013740 205013758 ATTTCCACAGTGCAGTCTC 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004295 1 1 6 80 10 53743273 53744245 CAGTTCATGTTGACAGATCGG 59 53745043 53745062 CTTCGTGTTCACAGTCTTCC 59 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000086078 3 1 3 81 12 31578536 31578556 GCTATACTCAGAGATGCAGCT 60 31578599 31580986 ATGGTATTCCTTGAGGGCG 60 NA Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 1 2 2 80 17 4313947 4313967 CAGACTGTCCTCTACCAACTC 60 4313034 4313908 TTGTTAATGCTCACTGAGACTG 59 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000073105 1 1 2 80 12 31238086 31238107 TAGCCTCTGCTTCTCATTACTG 60 31233305 31238050 CCATGATATCTCCAGTTGTATCCT 60 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 3 2 2 80 1 216886018 216886038 TATGCAATGGATCTGACAAGG 58 216885830 216885976 TCTCCTTCTGTGCCTTGAG 59 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716 2 1 2 98 6 72487111 72487130 GTTGGAGTTAATGACACGGA 58 72489154 72503021 GAGAAAGACCACTCTGCTG 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 1 1 5 81 8 6140680 6150141 AATGTCAGACCGTCAGAGC 60 6140319 6140337 CTGCATTCTGAGTCCCTCC 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000052396 1 1 3 80 2 261396528 261396552 GTCTGATAGTACGTTAAGGAGAG 58 261396468 261396487 TTCATTGGAGGATTCAGGGA 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869 3 2 3 81 13 71983312 71983331 TCAACCAGAAACATGCACTG 59 71979091 71983270 CTGTCTCTTTCAATGGAAGGC 59 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678 1 1 2 80 5 173620596 173620614 TGATGCTTAACTCCAGCCT 59 173610409 173620554 TTCCAGGTTTGTCTTCTACAC 58 NA Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 3 2 2 80 2 198833646 198833830 ACTTCCAATCCAGAGACCC 59 198833584 198833604 TCCACACCTCTATTTGTGGAG 60 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 2 2 2 80 9 116094552 116094574 AATAGTACTACCCTATCCAACGG 59 116089433 116094513 AAGTATTGACACGGAACCAC 58 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054 1 1 2 80 6 101614785 101636741 ATAAACGGATTCCAGACTCCA 59 101636782 101636801 AAGGAGTAGTGCTAAGGGAG 58 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 3 2 2 84 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121950 ATATTCACACTCTGTCCCTTAGAG 60 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000022665 3 1 3 80 18 12028709 12028730 AGAATGGACGCAAATTACAGAG 59 12028768 12029079 AGAATACAGATTGGTGGAGGTC 60 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682 3 1 3 99 13 52677847 52677865 GAGGAGAACAGGAGGAAGG 59 52677928 52679429 TCTTCCGCTCTGTCTTCTG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404 2 1 3 141 15 109738207 109738226 AAGAAAGATTGGGCAATGGC 60 109735775 109737532 TATTGGTTTGGGAGCCAGG 60 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 1 3 3 80 1 275866775 275866795 CTCTTCAACAGCTTCTTCTGG 59 275866166 275866734 CAGATTCGTCTCAGTTGCAG 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 2 3 3 80 5 173479582 173480058 TTCACTCTGTTTGATGAAACCC 59 173479523 173479542 CCTGATCAGAAAGATGCCCT 60 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000088674 2 1 2 80 14 44684662 44684684 CTCACTCAAGAACATATCGGAC 59 44684725 44684743 CTTGTGCCAGTTTCTGAGC 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769 1 1 2 80 10 55577101 55577119 ACCCTCCTGATCTAGACCT 58 55576855 55577057 AAAGACGGCGATCTTTCAG 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000087906 3 2 5 88 2 1508856 1510439 ACAATCAAGTGAGCCACCT 59 1508313 1508333 CATGCTTAGGAAGAGTTTGGG 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062052 3 1 5 85 2 1506292 1506310 ATGCTCCTTCTGCTGATGG 60 1501707 1506243 CACGCCTGACTTAACAACC 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000065748 2 1 3 84 11 11086249 11089576 CAAACATGGCACATTCAAAGC 60 11086185 11086203 CAGAAATCAAGGCTCCGGA 60 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 1 2 2 80 16 39909388 39912128 TGATGATTCCAATGTGCTTCC 59 39914062 39914083 CTTCCCTATCAGGAGTCATCAG 60 NA Rattus norvegicus 81 Tspan17 ENSRNOG00000018122 ENSRNOT00000086380,ENSRNOT00000041709 2 2 2 80 17 10357829 10357847 CAGTTTGAGAAGTGGCTCC 59 10357690 10357785 GCCACATATCTGGAGGAGG 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770 3 1 2 85 4 6938816 6942261 GTGAACAGGATCCTAGTTGC 58 6942308 6942327 TGTCCTTTATCCACAGTCCA 58 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 1 2 3 81 5 167992672 167992690 CGAAGTAGGCTTTGGATGC 59 167988716 167992628 TGAGTAGCTGTAGTGACTGC 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 2 2 2 80 20 25064983 25113503 CTCATCGTGTCAGCTTTGG 59 25064921 25064939 CACTGTTTGCACTACAGCA 59 NA Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 3 1 1 66 11 87235290 87235308 TCACATCTCTGGAGCTGAG 59 87222245 87222263 CTTCTCACCCATGAAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 3 2 3 151 10 70566473 70566491 AAATCTTGACCTGGGTCCC 59 70579747 70580555 TGAAGGACTGTCCTACTGC 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 1 3 3 80 3 118160731 118175175 AGAGTGAACATAATAGGTGAGC 58 118175215 118175234 TATTAGCATGTCCTGCTCCA 59 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219 2 1 2 87 7 114523676 114523694 CATGCAGTCTCTGTGTCAG 58 114504782 114507018 CATAATCCCTGGTTGAGGG 57 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 3 2 2 108 7 49386173 49531755 GGACAGAGATGTTGCAAGAG 59 49531825 49531844 AAACTCACTCTGAAGCACCT 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888 3 1 3 84 5 134492911 134492929 GCAAAGGCAATGGCTACTC 60 134492977 134494130 ACCTTGAAACTGCTTGTGC 59 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000091488 3 1 2 80 6 55677821 55677840 TCAGGAAGTTTCCCTACTGC 60 55677880 55685477 GATCAGAACCGATTTCAACTGG 60 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 3 2 2 80 7 117057213 117057682 GTTTGAGTCCATGGACACC 59 117057726 117057744 AAGATGCAACGTTTGTGGA 58 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000010466 3 1 2 81 10 104625713 104626627 GAGACCTTTATCTTGGAGTTTGAG 59 104625562 104625580 CAGACTCCACAGTGTCCAG 60 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521 1 1 2 136 10 88517714 88533100 GAAGCAAAGAGGGAAGCAG 59 88514464 88514483 CGATTACCGTAATAGCTGGC 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076545 1 2 3 84 1 48048394 48048414 TGGAAGGAGCAGATTCTTCTC 60 48048460 48049619 GTCCTACCAAGGGCTTCTG 60 NA Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 2 2 2 85 5 133872161 133875346 GGAGATAACGGATGGTCCC 59 133875394 133875413 CATTCACATTCTGCTGCCTC 60 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000067420 2 1 2 82 8 53313879 53313897 GAGGAGAGTGGATGGTTGG 60 53313940 53319675 ATTCAGGCAACTGAATAACAGC 60 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000085304 1 1 3 85 1 198304247 198304265 AGAGATGCTCAGCTCACAG 59 198303223 198303242 AGTTCCTGTTGGAGCTCTG 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000035129 1 1 3 87 13 56115334 56120376 TGAGTGTGAACCAAGAGCT 59 56121585 56121604 GGTGTGATGAAACAGGAGTG 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 2 2 2 80 18 26576487 26577309 GAAGCATATCCAGAAGGAGCT 60 26576427 26576449 TCCACTTTAGTGTATGGGATCTC 60 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 3 2 3 102 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654707 120654725 TGAGGATGAGACATTGGCA 59 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287 1 1 2 80 1 261428422 261430028 AAGATGCAATAGAGGAGGACG 60 261430070 261430088 TGAGGAAGCCATTGTCCTG 60 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000011070 3 1 2 121 7 130250587 130250606 CACATCAGTGAAGTCATCCG 59 130251951 130252895 TACTCAGAGAAGGCCAGGT 60 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297 1 1 2 80 7 37101500 37106507 CTTCAGAGGGTTTCATCTGC 59 37106548 37106568 GTACTTGCTGGTAATGTTCCG 59 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 1 2 2 80 3 118594314 118597335 CCCTTTGTTGGAAATGCAC 58 118594252 118594270 GACTGATGTCACTGCTGTC 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 1 2 5 88 10 56195688 56195706 TACATGTGCAACAGCTCCT 59 56195757 56196087 AGAAGATTCCCACTGGAGTC 59 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000091675 3 1 2 86 11 87678481 87678499 TAGATCCTGTACAGGCCGA 60 87678548 87682447 CTGTAGTCAGCCTAGGAAGC 60 NA Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 2 2 2 80 2 115774713 115774734 CTATCTCATGCTAAAGCTCTCC 58 115774772 115788189 CCAAAGTAAATGAGCATACCCA 59 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525 2 1 2 80 9 93239064 93265877 GAAGATGATGAAGAGGATCATGAC 59 93265916 93265934 GTTAGAAGCTTCTCGCCTG 58 NA Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 1 2 2 89 5 4971313 4971333 ACTTAAAGAAAGCAGGAGGAG 58 4959567 4971263 GGACAAACCAATACCTTGTG 57 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080590 2 1 7 83 20 4091740 4091758 GTACATAGAGCGGGAGAGG 59 4091799 4095056 GGTTCAACTGTAAGGAATCTATCAG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 1 3 3 80 5 134206571 134206591 GACTATGTGAAGGTGGTTCTG 59 134205115 134205840 GAGCAAACCATAACCAATCCA 59 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000078846 2 1 2 81 7 117149803 117149822 CGACACGATCTTCATTCAGC 60 117149548 117149635 GTCAGGAAGTGCATTGGAG 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000064105 1 1 2 82 19 12553392 12553410 CTGCTTCTGGAATGTGCAG 59 12504771 12553352 CATCTGTAGTCTTTAAATCGGACAC 60 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724 1 1 2 88 8 13248026 13251718 CTTCTGTCTATGAGCTTGGC 59 13247957 13247975 ATCGACGAAGTCCTGTCTG 59 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181 1 1 2 80 12 32533694 32533713 GAAGATGGCACAGTACAAGG 59 32533754 32594996 TCTGTCAGAAACCTTAACCAC 58 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000085464 2 1 2 80 12 32533695 32533713 AAGATGGCACAGTACAAGG 58 32533754 32594997 ATCTGTCAGAAACCTTTACCAC 58 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884 3 1 2 82 13 57229170 57241251 AGGGAAATGATTGGTCTCAC 58 57243862 57243880 ACTTATCAATGCCACCGAG 58 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000091650 2 1 3 192 7 12668224 12668247 GTATGCAGGAGTTCCCTCC 60 12667412 12667430 CTCAGGGTTCAAGTTGCTG 59 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941 3 1 2 80 9 82625518 82625536 CGGTACCTTGTGCTTATCG 58 82625578 82625684 TTCTGAATACCGGAATCTGTC 58 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491 3 1 2 83 X 15038909 15039041 TCCTTCGCAACAAGAAACG 59 15040852 15040870 TGAAGTGGAAGGAGACAGC 59 NA Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161 2 1 2 80 5 134738188 134738996 CATAGATGGGAATGGGTGCT 60 134739039 134739057 CTTCCCTCTCCATGGTCTG 59 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808,ENSRNOT00000072280 2 2 2 60 6 142418582 142418601 AAGGCAGATTCACCATCTCC 60 142418541 142418560 TTATCCATTTGCAGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000022801 1 1 2 82 5 59017878 59020275 CCTGGAAGATGAAGTCTATGC 58 59017816 59017834 AAGTGATGTCATTGAGCGC 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 114 18 56316005 56325241 AGTACTGGAGCCGATATGTC 59 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 3 2 3 81 12 36695273 36734422 CAGGTGCTCAAGAATGTCC 59 36734466 36734485 ACAAGTAGAAGGGAACAGGG 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695 2 1 2 116 11 7210335 7210353 TCCGAAGCTCAACTGAAGG 60 7210431 7265842 AAACTTCTTATACCTGCGCTG 59 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000086682 1 1 2 80 9 112400214 112400232 CTTGGATGCTTCGTGTCAC 59 112400276 112406670 CCACGAGGTACGAACTGAG 60 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093 2 1 2 86 14 77309759 77309777 TCCCATGGAAAGTCCTGTG 59 77309327 77309710 GTTGAATTTACCAGGCTCCC 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 2 2 2 80 1 85116538 85117787 CTACATAGTACACCTGAAGCG 58 85117829 85117847 TACAGGTTGTAGGACAGCA 58 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 2 1 1 60 11 71757630 71757650 CCTGATATCCTTGAAGGAAGC 58 71756181 71756199 TGTGTCTAGAGCTTGGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910 2 1 2 88 7 30095633 30113478 CTTATTTGGAGTGCTAACAGAGC 60 30095567 30095586 ACTGCACATTGTTGTATGGG 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 1 2 2 80 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423816 28423941 TTACCGTAGATCTCCTCTTCTG 59 NA Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 2 2 2 80 10 15490656 15491082 GAGGGCTAACAAGTCAGAG 57 15491126 15491144 TTGAAGCTGAGGAAAGGTG 58 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000045763 3 1 2 147 9 17931447 17931465 AGCCACTTCCACAAATTCC 58 17934690 17946769 GTTCGATTAGCAGTGGAGAG 58 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572 2 1 2 80 4 21541925 21559903 CCTATTCTCAGTCCTCTGCA 59 21559946 21559964 GAGATGAGGTGGTGGAGTC 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289 1 1 2 80 X 15160284 15160522 GAATTCAGCTGAACAAGACCC 60 15160564 15160582 CCACTAGGCCTTCTGACTG 60 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327 1 1 2 80 7 113703640 113703658 CACCATCAACATCAAGGCA 59 113681953 113703598 ACACTGATTCCATCATCACTC 58 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000005478 3 1 2 82 10 17276380 17276399 GATGAAATGAACCTGGAGCG 59 17276444 17279378 CCCTGGAACCTGATCTTCC 60 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 1 2 3 80 11 34081105 34081126 TCCAGAAGAACCTGAAGATGAG 60 34081165 34083829 CTGAATTTCTCCTTGCTGGTC 59 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000017740 2 1 2 90 5 150725760 150728271 TCTACAGTGAGGTGAAGCA 58 150728325 150728343 TAAGAGGAACCAGGACGAG 58 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000035522 3 1 2 84 4 165457995 165458014 CATAAGTCTCCAGGGTTGCA 60 165457314 165457948 ATTCGGAGTGAGCTCTGTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000042790 3 1 6 80 9 17350293 17350312 AGTTCGAGGAAAGGGAAAGG 60 17350355 17353787 CTTGGCTTGTCACATACGC 60 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 3 2 2 80 1 133375604 133375626 GCTACTCTTTCTGTACAACTTCC 59 133372430 133375564 ATGTCTGTGCTATCCTGGC 60 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 2 2 2 80 1 91883214 91883233 GACTCTTTCTCAAGCAACGG 59 91883275 91884982 AAGCGATGTGCTTAAACAGG 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575 3 1 2 80 1 167226703 167226721 GAGGCTGTCTTCAGCTACC 60 167225738 167226659 AAGGCGATGATCACCTGAC 60 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000085981,ENSRNOT00000016876 1 2 3 95 3 22890309 22892597 AGAAAGGGACCAGGTTTGG 60 22890232 22890250 CTTCTAGCACCTCGAGCTC 60 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000066528 3 1 6 80 7 132083636 132084308 GAGGTACACAGCAGATCCT 59 132080029 132080047 CTGAAGGAAAGACGCTCTG 58 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298 2 1 2 90 17 27544215 27550114 ATAGCACAGACAGCCAGTC 60 27544143 27544162 GATGTTGGCTGCTCTTTGTC 60 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 2 2 4 82 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532949 120532967 TCTCATCCCTCATGGAGCT 60 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 2 2 2 80 14 784450 785631 ATGAGACAGCAGATATGGAGC 60 785673 785691 TTTGGAGGCAGTAGGTCTG 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 3 4 4 80 16 54373119 54373137 CAGAGTGTGAGAAGCTCCA 59 54373180 54374550 AGTTGTCAAACTGCTCTTGC 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006 1 1 4 140 16 54293340 54298752 TCTCTGTTTGTGGGCTCTG 60 54298856 54298874 GTTCTTCCTCCTCAGGCAG 60 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929 1 1 3 109 17 30557838 30620754 TATAAGCAGGCCACAGAAGG 60 30621143 30621161 GATTTGAGGTCCATGGCAG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 2 3 3 80 13 71132312 71132330 ACTGCAAAGCTAGTCACCA 59 71132373 71136850 ATCGATATTCACCTCCCGTG 60 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 3 1 1 60 9 18361179 18361200 CGAACTCGATGATGTTAAACAG 58 18334681 18334703 CATAGTTCGAGTCTGTCTTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 2 2 2 80 9 20215436 20215455 AAGTTAGACGAAAGGGAAGC 58 20215497 20215932 GTCCTTCACATTATCTGCGA 58 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 3 2 2 80 16 54024574 54024701 AATGGTGGTTATCTGGGTATCC 60 54024736 54024760 AACTGATCTAGTGATAAACCCTACC 60 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071 2 1 2 101 6 986476 986494 AAGAACACAAGGAGACAGC 58 970092 986411 TCGTCAAATATGTGCCTGG 58 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 1 1 1 120 7 122160445 122160463 GAACAAGCTTCAGGCTCTG 59 122162661 122162679 AGTGGTGCTGGAGTTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 1 2 2 82 4 33929643 33929661 CATTCAGACGACAGTGGAC 58 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000079917 3 1 2 80 5 7746671 7747508 GAGGATTACAAGAATTCCAACAGG 60 7746614 7746632 GATCCTGCTTGAGGTGGAG 60 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000085278 3 1 2 123 8 56499875 56499894 ATAAATGAGGTCTGCAGGCA 60 56501942 56501962 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 3 2 5 80 2 258837765 258843814 GAATGTGTCCCTTACATGGC 59 258837704 258837727 TTCATAGATACTTGGAGAGTCCAC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000088023 2 1 6 80 12 41233087 41233105 AAACTTCCTGAAGCATCGG 58 41230420 41233046 TTCTCCTTACACAGTTGATACC 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 1 3 6 82 12 41302509 41302527 AGAGGAACTTCCTGAAGCG 59 41300159 41302465 CTCCTTACACAGTTGGTACCA 60 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 3 2 2 80 11 15495178 15495196 GTTGATCCATCCAGAGCAG 58 15495238 15498331 AAACTCACTCACATCTTGCTG 59 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 3 2 2 80 10 110905684 110906720 GTGACTTTGTTGTCCGAGG 59 110906764 110906782 TCACCCGTAGGTGAATGAC 59 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 1 2 2 81 4 123619398 123619416 TATGCTGTGCAAATCCTGC 59 123619461 123620505 CCTGCTCATCTGAGTTGTC 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000039904,ENSRNOT00000036642 2 3 4 81 8 124933683 124936107 CATACCAGGTCCAGAGCAC 60 124892696 124892714 ATGGTGGGTGTGATCACAG 60 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 1 2 2 80 5 64294799 64294818 CAGCTCTACTTCCTTCAGAG 57 64294861 64303955 AACAGCAAAGGACTCTTGG 58 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 1 1 1 68 6 141715824 141715843 AAGTTGTTGCTAAACTGGGT 58 141715645 141715663 TACCAGCTTCACCTCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000047472 2 2 6 80 1 41630350 41630369 CTGCAAATATCCTCAGAGGC 59 41628249 41630309 CACCGAGTAGTTTCATGTAGC 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000047472 3 2 6 80 1 41619744 41619762 TTCTCCTGAAGGAGGTCAG 58 41618657 41619701 AAGACAAATCCTGCTGACTG 58 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571 3 1 6 80 1 41798821 41798842 TACCATGACCACATGAGTATCG 60 41796351 41798780 TGCATTAGATCTGGCCAGG 60 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552 1 1 2 80 8 117514690 117524675 AACCTGGATCAGGAACAGC 60 117524718 117524737 GTCAATGACATGCTCGTCAG 59 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000087534 2 1 2 125 1 165646264 165646284 GAAAGACATCCTTGATCACCA 58 165647882 165649293 ATAATTGCAATCGCACGGT 59 NA Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 3 1 1 60 1 100205057 100205078 CTTCATCTTCAGTTTCCTCAGC 59 100204564 100204582 TCAGGCTGAGGAGAATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000084553 2 1 3 80 12 37423591 37423609 CTGCTTAGCACATCTGCTC 59 37420725 37423548 ACAGTCATGTTCTCTGATGC 58 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698 2 1 3 80 12 37396614 37398128 CAGTTCCGAGACCTTATTCAG 58 37391637 37391656 ATCAGCTCTGGTGATTTCCT 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516 2 1 2 80 16 81203048 81203976 TATCAGACAGAGGTCACCTG 58 81204019 81204037 GTCACAGCAGTAGCATGTG 59 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542 1 1 2 80 2 136994061 136994266 TCTCCCTTCTACCTTCACC 58 136994310 136994328 CATACACCTGGTACACTGG 57 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388 2 1 3 81 7 135524187 135524206 AAAGTTGTAGCCACTTACCG 58 135515987 135521709 CTGAGGTAACTGGAGGTCC 59 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 1 2 2 80 4 34671774 34674302 CTAGCAACATATCAGACCACTC 59 34671715 34671734 TTTGAAGCTCTCATGGATGG 58 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398 2 1 2 82 9 104864045 104868806 CAGTAACAGATGAGTTGTGCA 59 104863983 104864001 ACATGTTGATTTGTGCGGT 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 1 3 3 87 X 15759450 15760171 AGTTTCTCAAGCACTGCCA 60 15759381 15759399 AGAGACTGCACCACTTCTC 59 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 2 2 2 81 1 201442188 201442208 CTTCGACGGTATTTCATCCTG 59 201442251 201447945 ATCCTGAAGGCAGGTTCTG 59 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000045393 3 1 3 88 3 128919310 128922561 TCAAGAAGACCTCAGATGACC 59 128924498 128924517 ATAAGATGCCATCCATGCCT 59 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000066711 1 1 2 80 1 204267369 204267387 CCAAGACTTCATCCATGCC 59 204261994 204267326 CTCTGTTGAATGCTCTCCAC 59 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 3 2 2 80 7 119707325 119707348 CTCACTACGTTAATCCATACTTGG 59 119706733 119707287 TGAATACGGATGCATCCTCC 60 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 1 1 3 71 1 82832284 82832302 TAACAATGCTGAGAGCACC 58 82832142 82832160 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 1 2 3 80 1 82898409 82898429 AAGTCCAACCTTGTTCTATGC 59 82898070 82898367 GATACTGAGGCTACCTCCC 58 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508 2 1 2 80 16 7388156 7388175 GCCTATGCTAAGGAGTACAG 57 7387898 7388116 CTGAGTCTGATAGGTCTTAAGG 57 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 2 2 2 80 13 74829209 74861069 TAAAGTACCAGGCTTCTTCAG 58 74829149 74829167 GTGTTTCTGTCAAGCTTCG 57 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 1 2 2 80 8 116843564 116843582 CAAGGTGGACTACTTCGAC 58 116841762 116843522 GAAGCAAGGTCATCTTTAAGG 57 NA Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 2 2 2 101 19 16419472 16419492 GGAGGAGAACATTGATCTGGA 59 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000074954 2 1 6 80 13 84510543 84522953 TTATGCCAGTTCGCAAAGG 59 84522994 84523015 CCTTCTCGACATAGTACAGGAC 60 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000018552 3 1 2 80 9 27630495 27634474 GAAGCAGAGTCAGAAGCTG 58 27630433 27630452 GCTTGTCTGCTCTTAATGCT 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000067384 2 1 2 90 1 239442199 239442217 TCATCGACAGACTCATTGC 58 239442270 239444430 CTCCCATCAGCTGAATTCTG 59 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682 2 1 2 191 3 46809633 46812793 CTGTATCTGCCTACCAGGT 58 46806050 46807144 TTGCAGGCATGTATGTTCC 59 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 3 3 3 80 1 135836243 135836261 ACGTCTCCTTCCTCTTCCT 60 135834658 135836200 CACGTGCTGAATTGTTTCCA 60 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933 3 1 2 82 5 155966635 155968392 CAACAATGAAGGGTGATGGA 58 155968435 155968455 CTCATCTAGTTGCTCAAGAGC 59 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 1 2 2 80 7 2703637 2705755 TCATCGTGATCTCTAACAGACAG 60 2705795 2705813 CCAGCTCTAAGGACTCTGG 59 NA Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202 1 1 2 84 16 54114233 54114256 GTCTTACTCATCTAATAGAGCACC 58 54107335 54114190 TGAGGATCTCTGGCTAGGA 59 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 1 2 2 80 13 80764923 80765888 ATTCAGTTTCAGACAACCGT 58 80764862 80764880 CTGAACATACACGTCCCAC 58 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 2 2 2 80 13 80761259 80761277 AAGTGGATGATGGAACGAC 58 80760054 80761218 CATAAGGTATTTGTTCTGAGGC 57 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000091389 2 1 2 139 13 80759741 80759759 ATCTTCCCAACCGTAGAGC 59 80755699 80756760 TCTGGCTTTCCAAACAGGT 60 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014207 2 1 3 192 4 147692041 147692068 TTTCTCCTCCTAGGTTCATGG 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 1 3 3 80 3 22884843 22887244 ACTACTCTGAGAAGCTTCGG 59 22887285 22887305 GCACATACTCAATGTCAGGTC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 3 3 3 80 3 22884845 22887245 TACTCTGAGAAGCTTCGGG 59 22887287 22887307 GTGCACATACTCAATGTCAGG 59 NA Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 1 1 1 80 9 97355951 97355969 CCAGGAAGGCAAATCACAG 59 97365599 97365617 TCAAACAGATGCACATCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 2 2 2 121 3 117382699 117382718 TATGACATGAAATGGCAGGC 59 117379907 117380026 TTGAATTCAACCACGCCAC 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000048345 2 1 3 80 19 21491465 21491486 CACAGTGACTGTGGATATAGAG 58 21489623 21491426 CTCAACAGTACATGCATTCCA 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892 1 1 2 80 10 89653188 89653929 GGTGCAGAATTCACAGATTCTC 60 89653969 89653988 AGTAGAAGGCTTTGCTGGAG 60 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892 2 1 2 80 10 89653975 89654362 CAAAGCCTTCTACTAGTAAAGATCC 59 89654399 89654418 AAAGGACAGGGAAGAGTTCC 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892 3 1 2 81 10 89653189 89653929 GTGCAGAATTCACAGATTCTC 57 89653971 89653990 CTAGTAGAAGGCTTTGCTGG 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 3 2 2 83 7 15247725 15248595 TAAAGGAAGCCTGAGAACTCTG 60 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479 3 1 2 80 1 129770227 129770774 CTACTCCTTAGCTGTATACATTCAC 59 129770171 129770193 GGAATTGTACCAATAACCAAGGG 60 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025600 1 1 2 85 2 205856622 205856640 CCAGCATTACCAAATCCCA 58 205856687 205858230 CTGAGTCAGCTTCATTAAACC 57 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 1 2 3 87 14 81944455 81944474 GCTGTCTACATCAGAAGCCA 60 81948658 81950490 CTTGTGAACCTGTCTATATTCCAG 59 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 2 1 2 80 9 98410217 98418585 GACTGTAAGCCCAGATGAG 57 98418629 98418647 ACCATGTTGTAGGCATCAG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 2 8 10 80 10 87128342 87128362 ATTACAATCCCAAAGCCTCCA 60 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000052017 3 2 3 91 4 150681974 150695859 AACCCAAGCACTATTTCTGTG 59 150681903 150681921 GTGTACCTCGGTGATTGCT 60 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985 1 1 2 80 7 136791552 136852576 CTCTTCCAAGATTCTCCCAG 57 136791491 136791511 GTGTTTATTCCTCAGCTTCTG 57 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690 2 1 2 107 7 55151698 55151717 GACGCTCTAGTACCAGAGAC 59 55151784 55157086 TGCAGTTATCTTTCCTGATTCC 59 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 1 2 2 81 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890243 10890261 GAGCTGTAGTTCCTGTGGG 60 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 3 2 2 61 9 42882401 42882419 CTGAGAAGCTGAAGAAGGC 58 42882444 42882806 TTCTGATGTGGTCTGGTCC 59 NA DesignRelaxed Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000024751 3 1 2 196 1 205911559 205911827 AAGAAATCGTGCCACTCCT 59 205911987 205922924 CTTTGTTGCGTAGCCTGTG 60 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681 3 1 2 98 9 113313481 113331025 GACCTCAAATTCAAAGGCCC 60 113313402 113313423 TGTGGTCTTCACTTTGAAACAC 60 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000080418 3 1 2 82 12 40631519 40631540 GACTTGAAGCACATCTAATTGC 58 40631123 40631477 AAACTTTCTTTCCTCCGGAG 58 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000082892 2 2 3 80 8 128202854 128202872 AGTCAGACACTGAAGACCA 58 128201510 128202810 CTTGGGATTCCTGTTTGCT 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006 3 1 2 82 1 263920530 263920549 GACATCAATGAACTCTGCCG 59 263917791 263920485 TAGTCTTCACTGGTGGCTG 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 2 2 2 80 13 85852632 85852650 TGAACTACCCATCCACCAG 59 85852693 85854906 AGTGCTTTCCTGAGGATCTG 60 NA Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 2 1 1 60 3 20457272 20457292 GTCTACAGGGTTATAGTGCTC 57 20456946 20456964 TTCCCTATTTCCCTCTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 1 2 2 80 8 29944666 29945211 TCAAGGAAGATACCAGGTTAGC 60 29945249 29945270 AGAAAGTCAAAGTGGATATGCG 59 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643 3 1 2 85 8 29525123 29714297 TTGCAAAGTCAGGTGTACCA 60 29714345 29714363 TGTCATTCCCAGCGTAGAG 59 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000011784,ENSRNOT00000083312 1 2 2 80 10 13808330 13809265 ATATCTGCCATCAATGGCG 58 13809309 13809327 GTTGTCCGCCATTATCCTG 59 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000011784,ENSRNOT00000083312 2 2 2 80 10 13809581 13809599 ATGAGGTGGTACCTGAGGA 59 13809643 13810668 GAGAATGGTCCGGAATGGT 60 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000047444 2 1 2 80 X 20393853 20394109 CAACTAGTTCTCAGGAGCAG 58 20394152 20394170 TGGGCATAACAGAAGACTG 57 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 2 3 3 80 14 6436679 6436698 CACTAGATACAGGCTTCCTG 57 6435919 6436637 GTAGCAAAGCCCTAAATCCA 58 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000001169 1 1 5 80 X 159169226 159171036 AAATGCAACAAGGGTTTGGT 59 159171079 159171097 TGCAGTGGAAGCAGTAGTC 60 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000082645 2 1 3 80 1 169454327 169534361 GAGTACAAGGAGAAGCTGC 58 169454265 169454285 AAGGTCATCTTTCCAGTTCTC 58 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 1 2 2 80 8 44063522 44063540 ACCTTCCCACAGAACAAGG 60 44063584 44064416 TGAATGTGACCAGTCCCTG 59 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000091418 3 1 2 85 2 27311222 27311240 GACATATTTGCCGTTGCCA 59 27308966 27311173 ACACCTAAATGAGAGCCCG 60 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985 1 2 3 80 14 5938304 5940714 AATTGATCCCAGGCAACAG 58 5940756 5940776 TCCGGTTAGGAAAGAATTGTC 58 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877 2 1 3 82 14 5928846 5928865 TAGTCGTGGCTATTGTTGGA 59 5928909 5928932 CATGCCACTGTGATTCTGTC 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000090426 3 1 2 80 3 57883706 57883724 AGTTTGGTGTCACTCTGGT 59 57883642 57883663 AAGTAGCTGTACTTACGCCT 59 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 2 2 2 82 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638387 93638406 GCTCACACTTAGCTGTAGGT 60 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316 2 1 2 80 10 93602134 93602152 TGTATGAGCAGAGGTTCGC 60 93594812 93602094 GTGGGTAATTTCTTGACATCCTC 60 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 1 2 4 80 3 152600426 152600444 GAAAGATGCACAGACCCAG 59 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 1 2 4 80 3 152600426 152600444 GAAAGATGCACAGACCCAG 59 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000080557 2 2 4 94 12 48129528 48130110 ATCATTTCTGATGTGCTGGAG 59 48129454 48129472 ATCTCCTGCTTCACCTGTG 59 NA Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 2 2 2 80 10 94593640 94593659 ATCTGCGCAAATTCAGAACC 60 94592576 94593600 GGTAGTGGTGTCTCTTATTCCT 59 NA Rattus norvegicus 81 LOC100362827 ENSRNOG00000030748 ENSRNOT00000042543 3 1 1 60 2 57728892 57728910 AGGAAACAAAGCCAAGGTG 59 57728850 57728869 TTTAGCAGACAACCTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h4b ENSRNOG00000032224 ENSRNOT00000040210 1 1 1 69 2 198412293 198412311 GAGGAAAGGGTGGTAAGGG 59 198412242 198412260 ATGTTATCCCGCAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox6b1 ENSRNOG00000034161 ENSRNOT00000045155 2 1 1 60 2 211337344 211337363 ACCAGACTAAGAACTGCTGG 60 211337386 211337404 GTCATTGCCTTCTCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cela3b ENSRNOG00000021619 ENSRNOT00000036788 1 1 1 80 5 155764811 155764830 CTGTAACACCCTGAAGAAGC 59 155763940 155764768 TTGTTGGCTATGGTCTCCT 58 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000089827 3 1 2 87 13 84617803 84618275 AAATCCAGAAATGGAGTCCC 58 84617735 84617755 CAATTCCTGGATCTCAACCTC 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805 3 2 3 97 1 217620433 217620454 CAAATACGGAATTGACAAGGAC 58 217619935 217620378 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343 3 1 2 96 8 96511099 96511119 GAAAGGAATGTGGTTGTTCCC 60 96501604 96511047 CTCTTCTTACTTTAGTTCCACTCTG 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 2 2 2 80 10 90207279 90208568 TCCAGACTGAGATTGTTACCA 59 90208609 90208628 CAGATTTCATGGTGAGCCAG 59 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260 3 1 2 97 9 42918043 42919374 CTCCTGTCTCTTTGTTCCCA 59 42917965 42917983 GAGGACTGGAAGGATGGTG 60 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367 2 1 3 80 14 10897136 10897154 TTCAGCTTATGCACTGCCT 60 10900795 10902045 TTCTGAGGACCTTCCAATACAG 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000091456 1 1 2 80 20 50201339 50201358 TGAGCCTAAATGGATGGGAG 59 50212822 50212841 ACTGGATCACATCCTTCCC 59 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 1 2 2 80 2 208787620 208795908 GGCCTACTATGAGATTTGTACC 58 208795948 208795967 TAGGCATAGGGAACTTCCTG 59 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038 3 2 3 93 3 176487422 176487901 CAGGAGAAGGTGAAAGAGGG 60 176488625 176488643 ATCCCTTACTGCCAACTCC 59 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 1 1 1 72 13 26768567 26768585 GGATCCAGGATAACGGAGG 59 26605743 26605761 AAATCAAACAGAGGTCGCA 58 NA DesignNoJunction Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392 3 1 2 80 8 52158193 52168552 ACCATCATCACAGACACCA 59 52175836 52175855 CAGTTCTTCTGCGGAATTGG 60 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000065342 3 1 2 80 1 193202362 193202387 ACTCTTTAACTATCCTGCAGGT 59 193202428 193202446 CCAGGTACAGATCCAGGTG 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 3 3 3 80 1 219856720 219857182 GTCTTCAAGTTCTGTGAGGTG 59 219857223 219857242 GTTTGGCAGGTAGTTAAGGG 59 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939 2 1 2 84 1 46169958 46182859 CAAGGTAACTACTCCAGAACC 58 46182905 46182923 CATTGATGCCCATACCAGG 58 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000037559 2 1 2 83 20 53830064 53830082 AGCGGAACTGTAACCTCAC 60 53804478 53830019 GATATGGAGAGCCCATAGGAG 59 NA Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 3 2 2 80 2 252292712 252292732 AACATGACGACCTTTGATCAC 59 252292771 252293309 ATTGTCTGGATCAGAACTTCCT 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809 1 2 5 100 20 4817164 4818500 AGTGCTTAGCTCTTCTGTCG 60 4817083 4817101 GTTAGGTGTCCCAGAGCAG 60 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 1 2 2 80 14 83911561 83915176 GCATTGATGAAGTGATTGTCC 58 83915216 83915236 CAAACTTCTCCACATTGTCTG 58 NA Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 1 1 2 60 14 85312063 85312082 GGGAATTAGAGGCAGTAGGA 58 85312281 85312300 CAAGCTCCAGTCTTTAGGGT 60 NA DesignNoJunction Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822 1 1 2 80 8 132120519 132135488 CTCCAGGAACATGCTTGTC 59 132135532 132135550 TGGTACTCAATCGTGTGGT 59 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000080695 2 1 2 108 14 82278066 82278993 TGTACTCAAGTCCTGGATCAG 59 82277978 82277996 GAAATTGGTGGCTCGACAG 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893 2 1 2 107 3 5816033 5816767 TCTGGTCAGTGTTCACACC 60 5815944 5815963 TCTTCACCACATCACCTTCC 60 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 1 2 2 80 9 53704930 53706122 CTGATGAGGAAGAAGATAAGACG 59 53706161 53706180 GGTCGATAGTTGCTATGGGA 59 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722 3 1 2 84 12 52140765 52142204 AATAGCGACAATGTGGAACTC 59 52140701 52140719 TGTTACGCACAACCTTCAC 59 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000005561 3 1 2 172 7 94489770 94500831 ACCAAAGGATCAACAGAAGAG 58 94488998 94489637 ATACTTTCTTCAGCAGCCTG 58 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 3 2 2 82 8 129242677 129242698 AGGCAGACATCAATACAAAGTG 59 129242739 129242838 ATCTGTCATCTTGGCTTTCCT 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171 1 1 2 103 9 1631899 1654476 TGAACAAAGGGCAAAGTCC 59 1654543 1654561 TTTGGTAGCAGATGAAGGC 58 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 3 2 2 80 20 5007094 5007113 TGAGCATCACTAGAGCTGTG 60 5007154 5007292 CTACTTCCAAGAAACAGTCGG 59 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 3 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532382 22534333 CTTGTAGACGTTCCTCTGCT 60 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 2 2 2 80 1 6743474 6743494 AAATCTGAGTTTGTGCGAGAG 59 6739991 6743434 TCTCTGCATATCTTGGTCCAC 60 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 2 2 2 80 14 86113559 86113577 GTTTCAGGTTGAGGACCAC 58 86113405 86113516 AGCACAAATCTGTCTGTGTC 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299 2 1 2 80 8 87245464 87245483 CTCATCTTCATTCCCATCGG 58 87230035 87245424 ATACATAAACACATTGCCCTCG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 2 3 8 86 20 4364126 4364247 CCAATGTCCCTAATAAGGTGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 1 2 2 80 3 153235237 153245836 GGAGTAAGTTCCTTGGAGCA 60 153235176 153235199 CTTCATTAGATCAATCCGAGACTG 59 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 3 2 2 80 3 153235245 153238191 GAAAGTCTGGGAGTAAGTTCC 58 153235185 153235205 ATCAATCCGAGACTGATTCAG 58 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756 3 1 2 82 16 72129661 72129681 GCCATTATGGTTGTTAAGCAG 58 72129722 72133225 TCTTCTGATATGGATCCTTCAC 57 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 2 2 2 82 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452301 21452321 TCCCATTTGACATATCTGACC 58 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 1 1 1 64 3 153951998 153952017 TGATGATCGTCTGGTTACAC 58 153949302 153949323 GCATAAATCCGAATCATCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980 1 1 2 80 8 122024189 122031217 TACGTAACAATGGTTACCACAG 59 122031256 122031276 CAGATTCTGAGCTTCTTCTCG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392 3 1 8 104 20 4484120 4484366 CACCACAGTTCCTGATGGT 60 4484434 4484452 GTTGTATTTGTCCACCGGC 60 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 2 2 2 80 2 52397470 52397491 TTCTGGAAAGAGTGAATTCGTG 59 52397529 52402883 GTTTAACATGAAGGATGACAGC 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 1 2 2 137 2 52379446 52397426 AGCCATACTTCCCATAGCT 58 52397527 52402878 ACATGAAGGATGACAGCAG 58 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 2 2 2 80 8 94230379 94232602 AGAAGTTATGAAGGTACCTGTG 58 94230320 94230339 CCAATGTCAAACTCTTGAGC 57 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694 2 1 2 81 8 94225895 94226581 CACCTCACAAGAAAGTGCAG 60 94225833 94225851 TCTTTCTCCAATGCCTCCG 60 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230 1 1 2 89 20 47659680 47659698 AAGCATGCATTGACTGTGC 60 47659751 47663584 AAGCAGAGACTGACACCAG 59 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 2 2 2 80 5 79398799 79400910 GAGTGTGATACAGCTCTGGT 59 79400950 79400971 TTCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 1 2 2 80 5 154931752 154932854 AGAAGCACCTTATAACAGTGAC 58 154931693 154931711 CCGAAGTTGATAAGACCGT 57 NA Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 1 2 2 80 8 63146090 63146110 CTTACAGGGTACTACTCATGG 57 63143293 63146051 GGAGTTATAGTTCCTCCTTCTG 58 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659 3 1 2 90 16 67522467 67522485 TCCTGGTCATTGGTGTCAC 60 67522536 67527006 AGAGAATTTCCTGTCAATGCAG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000084375 3 1 4 130 3 56873186 56873205 AGAGACACCCTAAAGTACGG 59 56878171 56883653 TCTGATGGCATATTGGTATTGG 58 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000078862 1 1 2 80 5 101104600 101105831 TGAACTCATTTACTCAGCATGC 59 101104541 101104560 GAGGTGTGGGACCTATATCC 59 NA Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 1 2 2 80 16 80915396 80915417 GAATTTGGCGTCTTCTTTACTC 58 80915455 81054938 GGATATTCTCCACACCTTTCTC 58 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000081338 1 1 2 96 3 66719367 66719385 AGAAGAGGGTGACCAACAC 59 66722430 66779970 TTGCTTGGTCCTTTCATAGC 59 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 3 2 2 80 5 152095742 152095760 GATCCCTCCGAAGAGATCG 59 152094992 152095701 GTCGTCATACACATCTTTCAGG 59 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816 1 1 2 80 3 427929 429528 CTTACGTTATTCTGTGAGCATCTC 60 427872 427890 TGCCAGTTCTTTAGGGAGG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392 2 1 4 80 16 81623912 81624349 AACCATCCTACAGGTTTCCTC 60 81624391 81624409 CTGTACCAGGGACTTTCCC 59 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 2 1 1 60 3 176441551 176441569 GATACGGTCTCTGCCACTC 60 176442794 176442813 TGGATCTGAGTAACTCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 3 1 1 60 3 176441549 176441567 AAGATACGGTCTCTGCCAC 59 176442792 176442811 GATCTGAGTAACTCAGGGCT 59 NA DesignNoJunction Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 2 2 2 114 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528554 75528572 AACAGAGTCGGTAGATGCG 60 NA DesignRelaxed Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 3 1 1 88 16 75668075 75668094 TGCTTGGTCCAAAGAAACTC 59 75666646 75666664 ATGAAGAGCCTACAGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000023352 2 1 4 80 16 81945076 81945095 GAGAAATGAAGAGATGGCCC 59 81897668 81945035 TGGTGCATGATTTCATCAGTG 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000084866 2 1 2 80 3 155344044 155344062 TCCTGAGGTGTATCGTGTC 59 155344102 155346955 CATCACGGATAGTCCTATATGCT 60 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 3 2 2 80 3 151351163 151352786 TCAGCAAGGAAGGATATTACAC 58 151352827 151352845 GCTCCACACTCAGTTTCTG 59 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194 1 1 2 80 3 151326679 151326697 CAGCAGTCTCCACTATGCA 60 151326740 151327516 CTTTCAGCCACTCGATTGTC 59 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 2 1 1 61 16 83358445 83358466 AACATCTCTATATGGGACACCG 60 83381221 83381239 CAGTACATGGAGCCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000090674 1 1 2 124 16 81493514 81494835 GACAGTACCTGGACCAGAG 59 81494921 81496127 CTTCATACAGTTTGTCCAGCT 58 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141 1 1 3 105 3 51410859 51410879 ACCCTACAGTTTATGTACCCT 58 51408708 51409138 TTACTCCATATCCTCCCGG 58 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 2 2 2 82 3 176445751 176445769 GTGGATTTGACCCATTCCC 59 176444801 176445706 TTATGCAGGCAAATATGCCT 58 NA Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 3 2 2 85 16 82987071 82988034 CATCATTTACAGGATTGTACAGGAG 60 82987010 82987029 CCGATCGTTTCTTAGATGCC 59 NA Rattus norvegicus 81 AABR07008152.1 ENSRNOG00000058109 ENSRNOT00000087161 2 1 1 80 2 46042109 46042422 AAGGAGACTTTAGAGCAGGT 58 46042048 46042070 GTCTGACAGGATAAGATCAAACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000056354 ENSRNOT00000080766 2 1 1 60 2 49203740 49203760 CAGGGTTTATTTGGTGATCTG 57 49203781 49203800 GTGAGAAAGAAGGGAACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009834.1 ENSRNOG00000061630 ENSRNOT00000082148 3 1 1 60 2 114386271 114386289 CACAGCAGTGTTATCTCCA 57 114386313 114386331 CAAGACAGCTGAGATTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052662 ENSRNOT00000080827 2 1 1 60 2 252246382 252246406 CATAGAGAAGATTAGTATGGTCCCT 59 252246346 252246366 TGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055198 ENSRNOT00000087276 2 1 1 85 2 44247236 44247254 CTGCTCACTTTGACAGCAC 60 44247303 44247321 ATTTGCCTGTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053792 ENSRNOT00000082104 1 1 1 60 2 180808685 180808703 AGGCCATGTCTATGCTCAG 59 180808723 180808745 GTGTTAGGCTACTAAGCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011090.1 ENSRNOG00000056030 ENSRNOT00000087814 3 1 1 60 2 157724042 157724060 AAATGCTGGGATTACAGGC 58 157724000 157724018 ATCTCATGTCCATGTGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060458 ENSRNOT00000087565 2 1 1 65 5 171157606 171157625 AGGTATTACTGCTGTGTCAC 57 171157653 171157671 AGTGCAAACATGGCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008300.1 ENSRNOG00000039481 ENSRNOT00000060511 3 1 1 69 2 52658355 52658373 CTGAACACCGAGACTTGTG 59 52658300 52658318 CTTCTTCTCCAGTTTCGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA55 ENSRNOG00000058533 ENSRNOT00000083798 1 1 1 60 5 140989171 140989189 AGCAGAGGAAATCCAGACG 60 140989213 140989231 GCAGAGTTGTAGGGACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036044 ENSRNOT00000054167 3 1 1 60 11 72575271 72575290 CAGATCTCATCTGATCTCGG 57 72575230 72575249 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055522 ENSRNOT00000090306 3 1 1 60 8 26732747 26732766 TGGATCAGTAGGTGACAGAG 58 26732706 26732726 TCATAGGTAAGAACACTGAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059735 ENSRNOT00000080002 3 1 1 60 16 46127803 46127822 CTGTGTCACGTGTACATCAG 59 46127843 46127863 ATACTGAGCTCAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059871 ENSRNOT00000090973 1 1 1 60 8 35140991 35141009 AGCTTTGCATTTGTGACTG 57 35141033 35141051 CTTCTGTCCTTTCTGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056523 ENSRNOT00000079322 1 1 1 60 8 101915572 101915590 CCCTCCAGATATGCTGACC 59 101915612 101915632 ACATGACACAGTTGTGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057457 ENSRNOT00000090196 1 1 1 60 8 71502931 71502952 AGAGATGCCATGATATTGAAGG 58 71502892 71502912 TCCAGAGTGCTATGAATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053678 ENSRNOT00000084041 1 1 1 60 5 47735896 47735916 GGACCATTCTTCAGTCAAGAG 59 47735937 47735956 TCTTTGGAGGTTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053678 ENSRNOT00000084041 2 1 1 60 5 47735950 47735968 CCAAAGAAGCTCCAAGGAC 59 47735992 47736010 GCACAAACCAATCAATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060895 ENSRNOT00000082804 2 1 1 61 11 19700052 19700071 ATTGGAACATCTTGCAGCAC 60 19700010 19700029 GGCCATGCTAATCTACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059446 ENSRNOT00000089355 2 1 1 60 5 107757472 107757490 CACGTGTGAGTCAGTAGGT 59 107757430 107757451 TTCATAAGTCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041675 ENSRNOT00000063428 3 1 1 60 8 130864751 130864770 TGAACTTGGAAGCTAAGCAG 58 130864710 130864730 CTTGTCTTATTCTCCCATCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054813 ENSRNOT00000089220 3 1 1 101 5 50651454 50651473 CCAATGAGGTTTATCCGAGC 59 50651537 50651555 AAAGTACCATAGGCTGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000054774 ENSRNOT00000088446 1 1 1 65 8 44991646 44991665 CGCTGTGATGATTGATTCCA 59 44991693 44991711 AAGGAACTAGCCAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058113 ENSRNOT00000080814 3 1 1 60 2 210827408 210827428 ATACCCTAGACGTGGATACTG 58 210827449 210827468 CTTGCAATCATAGGGAACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051550 ENSRNOT00000086050 2 1 1 60 16 77847898 77847917 ACTTTGAAGCATGGCATGTG 60 77847857 77847878 CCTCTCACTTCTCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050753 ENSRNOT00000071367 2 1 1 60 8 84353089 84353109 CAGCCATACCATCATGATCTC 59 84353129 84353149 CCATCCAAGTATTAACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058798 ENSRNOT00000085777 3 1 1 60 16 21559014 21559033 GCTCAGTAAATGACTTCCCA 58 21558973 21558995 ACTACATCTGTTTAGTCAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053522 ENSRNOT00000082517 1 1 1 80 15 39571006 39571024 CTCAAGCCCTGGATAACCT 59 39570625 39570962 GACAACTTGCACTGTCCTC 59 Novel Rattus norvegicus 81 SNORA57 ENSRNOG00000057375 ENSRNOT00000083819 1 1 1 78 X 106471720 106471738 GTAGAAGAAAGGGCTCCGG 60 106471780 106471798 TCTGAGGATAGAACCTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026361.2 ENSRNOG00000054572 ENSRNOT00000089722 2 1 1 60 16 74072488 74072507 TAGTATCGACTCCGCTAAGG 58 74072447 74072468 AACTGATTATGTTTGGCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056848 ENSRNOT00000089826 3 1 1 60 8 62079084 62079105 CAACCAAATTTAGCCATCACAG 59 62079045 62079064 ACATGAACAGTGAAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059707 ENSRNOT00000088524 1 1 1 71 16 14468597 14468615 GCGTCAGTATATGGCAGAG 58 14468649 14468668 TTAGGTTACCCGTCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057479 ENSRNOT00000080244 3 1 1 60 16 21047044 21047065 ACGTGTTGTTAGTATGTGTCAG 59 21047083 21047104 AGTCAGAACAGAATACTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057773 ENSRNOT00000081143 2 1 1 98 16 12367496 12367515 ATAGAGCAGGTACAGCATGG 59 12367576 12367594 TTACCCTACAGGTGGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058756 ENSRNOT00000079881 3 1 1 60 17 20263018 20263038 CTTTCCAACTGGATCATAGGA 57 20263057 20263078 TGAGACTACATTATTGTGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057411 ENSRNOT00000081030 1 1 1 60 1 169806023 169806042 CTTCACTGTGGCAATATCGT 58 169806063 169806083 CCAGTTAGCAATAATCATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002782.1 ENSRNOG00000054568 ENSRNOT00000088960 1 1 1 60 1 84833944 84833962 GGAAGAAGGTGATGTGGTG 58 84833902 84833923 CCCTAACAGCATATAGTCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060609 ENSRNOT00000090750 3 1 1 61 2 248528224 248528246 GATACAGAGAAGATTAGCATGGC 59 248528265 248528285 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071598.1 ENSRNOG00000054937 ENSRNOT00000090467 3 1 1 164 8 123829383 123829401 ACATACCTCCACACTACCT 57 123829237 123829256 AGGTAGTGTGGAGGTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053020 ENSRNOT00000091748 1 1 1 60 6 65355703 65355722 TCATCAGTAAGTGGCAGAGG 59 65355745 65355763 TGGTCACAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000054868 ENSRNOT00000089157 1 1 1 60 X 37279680 37279698 AGCAGAGGAAATCCAGACG 60 37279638 37279657 GCAGAGTTGTAGAGATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.3 ENSRNOG00000061318 ENSRNOT00000089296 3 1 1 60 1 84102849 84102868 TGAACCTTGTGGTTGATGAG 58 84102808 84102826 CCACTGTTGTTCTGTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076943,ENSRNOT00000007671 1 2 4 80 7 115847677 115848636 CCTGTTCACAGATGAAAGAGC 59 115847617 115847635 TTCTTGCCACCATAGTGGA 59 Novel Rattus norvegicus 81 U3 ENSRNOG00000056198 ENSRNOT00000077206 2 1 1 60 6 83271769 83271789 AGAGAAGTTTCTCTGACTGTG 57 83271729 83271747 GAGAACGCTACATCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000056198 ENSRNOT00000077206 3 1 1 60 6 83271769 83271790 TAGAGAAGTTTCTCTGACTGTG 57 83271730 83271748 AGAACGCTACATCTCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000053764 ENSRNOT00000087746 2 1 1 60 1 101121710 101121729 TTGTGATGAGGATGTCTCCC 59 101121669 101121690 CATGTAGAGTCGTCTCATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056965 ENSRNOT00000090251 3 1 1 60 9 17079505 17079526 GAACGGTACTGAGAAGATTAGC 59 17079544 17079565 TGAGTTATGAATTTGGGTGTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055998 ENSRNOT00000081879 1 1 1 60 2 94180518 94180538 GAAGTCTGGATATGCTGACCT 59 94180558 94180578 AATTATGCAGTGGACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053837 ENSRNOT00000083607 1 1 1 60 4 128865871 128865892 GATACAGAGATTAGCATGGCCT 60 128865832 128865853 GTGAAACACTTCACAGATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058551 ENSRNOT00000089888 3 1 1 63 2 206573469 206573489 GCTATCTGAATGAAAGCACAC 58 206573512 206573532 CTTGCATAGGGTGCTAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056549 ENSRNOT00000078677 2 1 1 61 2 100079487 100079505 CTGTGTACCAGCCAGTAGG 60 100079444 100079462 GTCACAACACAGAGCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056549 ENSRNOT00000078677 3 1 1 64 2 100079487 100079505 CTGTGTACCAGCCAGTAGG 60 100079441 100079459 TAGGTCACAACACAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070278.1 ENSRNOG00000051681 ENSRNOT00000077762 1 1 1 64 8 63291867 63291885 AAGGAGGAAAGAAAGGCAC 58 63291687 63291705 CATGTGTAAAGGTGGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07039950.1 ENSRNOG00000048605 ENSRNOT00000054663 2 1 1 77 X 88635288 88635306 CTACAACCAGTGCAGACTG 58 88635229 88635247 GTCCTGCTTGAGAGTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055218 ENSRNOT00000086151 1 1 1 60 2 128826144 128826162 TGAAGAATGCAGCTACCTG 58 128826185 128826204 GTTTCCATGATCAATGCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042541.1 ENSRNOG00000047138 ENSRNOT00000071223 1 1 1 60 X 158969021 158969041 CTTTGATAGGAAACCTGCCTG 59 158968981 158968999 CTCGATATGAAGACCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000055223 ENSRNOT00000086233 3 1 1 70 1 41383977 41383996 TATAATGTCCAGCACAGGGT 59 41383926 41383946 TCTGGAATCAAAGTTCTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056326 ENSRNOT00000087675 1 1 1 78 X 109174665 109174683 ATTCTCACTTTGGCAGCAC 59 109174605 109174624 CATGTGATCTTTCTCCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061529 ENSRNOT00000089851 3 1 1 67 2 122323226 122323247 GCAGCACATATACTGAAATTGG 58 122323273 122323293 TTCATGTCTTTCTTGCAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051879 ENSRNOT00000077140 1 1 1 60 9 3981615 3981633 TGAAATTGGACCGACACAG 58 3981654 3981675 AATGTGTACATCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044504 ENSRNOT00000069771 2 1 1 60 2 63047413 63047433 AACTCACCTGATCTTAGAAGC 58 63047452 63047473 ATTCTCCCATCCATGTATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044504 ENSRNOT00000069771 3 1 1 60 2 63047422 63047444 GATCTTAGAAGCTAAGCAGTGTC 59 63047462 63047482 CTCCTTTCTATTCTCCCATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018218.1 ENSRNOG00000060554 ENSRNOT00000083932 3 1 1 177 15 47340767 47340785 TTAGAGTTCCCAGCAGCTG 59 47340926 47340946 AGACATCCTGAACCCTTGC 60 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059357 ENSRNOT00000084517 1 1 1 60 16 20568060 20568078 AATGGCTACCCTTCTTGCT 59 20568099 20568120 CAGAGACCATATCTGTTCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054153 ENSRNOT00000078912 1 1 1 60 X 70583043 70583061 GCAAGTGTCTCCTTTCTCC 58 70583085 70583103 GTGCATACACAGCTTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054153 ENSRNOT00000078912 3 1 1 60 X 70582999 70583017 CTCCATTGACTGCAAGGAC 59 70583041 70583059 AGAAAGGAGACACTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000055787 ENSRNOT00000090555 3 1 1 60 15 28166427 28166445 CTTGCTGGTACAGTTCTCC 58 28166469 28166487 CATGCATACATCACAGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059925 ENSRNOT00000088932 2 1 1 60 1 126420168 126420187 TGAATAGAGGAGGACCAACC 59 126420127 126420145 GACATTCAGAGACTCCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035975 ENSRNOT00000054098 3 1 1 60 16 39300286 39300304 TGAATGTGCCTGATCTCGT 59 39300328 39300346 AAGTACTAAACAGGCCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051944 ENSRNOT00000082801 3 1 1 60 X 76209972 76209991 ACAGAGAAGATTAGCATGGC 58 76209931 76209952 GAGGAATGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041010 ENSRNOT00000062763 3 1 1 60 16 47464371 47464391 TGATCTCTGAAGCTAAGCAGG 60 47464331 47464350 TGAAGTTTGGTCTCCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055228 ENSRNOT00000077714 2 1 1 63 7 106603052 106603073 CAGCAATGAGCAATAATCACCA 60 106603097 106603115 GAGTTGTGCATGAGTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055228 ENSRNOT00000077714 3 1 1 64 7 106603052 106603072 CAGCAATGAGCAATAATCACC 58 106603098 106603116 AGAGTTGTGCATGAGTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128353.1 ENSRNOG00000046711 ENSRNOT00000073444 3 1 1 80 13 37512661 37512684 AGATTTCACCTCACATGCGA 60 37512725 37512745 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07058534.1 ENSRNOG00000048207 ENSRNOT00000054624 2 1 1 65 7 122691127 122691145 GTTGGAATCTGGCACTGTG 59 122691080 122691098 GGTATTGTAGGTCCAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061148 ENSRNOT00000092071 1 1 1 60 1 75662827 75662850 CTCCCTATCTACTCTATATGTGCC 59 75662869 75662887 AAGCCATCCTCTCCAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055207 ENSRNOT00000085379 3 1 1 60 X 139701072 139701094 GATACAGAGAAGATTAGCATGGC 59 139701114 139701132 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000059358 ENSRNOT00000091062 3 1 1 60 X 65279869 65279890 CATGAAGACAAGTGAGAAACCA 59 65279830 65279851 CAGGTTTATTCAGGATTGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055600 ENSRNOT00000081857 1 1 1 61 X 27104678 27104696 AATTAGTTTGTCAGGGCCC 58 27104720 27104739 AAATATGGAGTGCTCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055186 ENSRNOT00000088318 3 1 1 60 X 28453858 28453876 TGGCTGCAAACAGTATCCT 59 28453898 28453918 CCAAGTTCTCCTAGAGAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050324 ENSRNOT00000070869 2 1 1 60 3 19205654 19205675 GTCTGGGACCTCTTATTATCTC 57 19205695 19205714 ATAAGTGGCAGCATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063281.1 ENSRNOG00000054165 ENSRNOT00000084242 2 1 1 80 6 26444100 26444469 CCGTATCAGTGTTATTCAGGG 58 26444040 26444059 GGATGGCTGATCTCAATTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041847 ENSRNOT00000063600 1 1 1 60 16 39597958 39597980 CTTGTCTAATCTGGGAAGTTAGG 58 39597920 39597944 TAGGAAAGCCATCTAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058703 ENSRNOT00000078465 3 1 1 60 X 14960963 14960981 CTGCAGTGCTTTAAGATGC 57 14961005 14961023 CTGTCTGGGTTTCATGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056414 ENSRNOT00000084714 1 1 1 83 9 19961946 19961967 GGCAGTATTGTAACCAATTAGG 57 19961884 19961904 TTTCTTACCTCATTTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061534 ENSRNOT00000086394 3 1 1 60 2 217707297 217707318 ATGGCTTCCATGTAACATATGC 59 217707258 217707279 CAGAACAGTGATCCTACTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021687.1 ENSRNOG00000054408 ENSRNOT00000071204 3 1 1 115 13 85519373 85519391 AAAGAGGCAACTTGAGCTG 58 85519472 85519490 CACTATGTCTTTGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059264 ENSRNOT00000087292 3 1 1 60 8 32413548 32413570 CGATACAGAGAAGATTAGCATGG 59 32413510 32413528 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054602 ENSRNOT00000080479 3 1 1 60 16 37214216 37214235 CTGTATCACATGTGCGTCAG 59 37214257 37214276 CCAGTGTGCATAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118147.1 ENSRNOG00000056651 ENSRNOT00000078600 2 1 1 89 1 88193292 88193310 GAGTTTGACTTGGCTGCTG 60 88193102 88193122 CTTTAGAGGACAGTGTTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 3 1 1 60 18 45960513 45960533 ACAACTGGATTTCCATCTCTG 58 45960554 45960575 CAGAACTCTTGACTGAAGGT 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056460 ENSRNOT00000090901 3 1 1 60 2 63845640 63845660 AGAAGATTAACATGGCTCCTG 58 63845681 63845700 AGATATGGAATGCTTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057090 ENSRNOT00000078811 1 1 1 60 4 157485708 157485726 GTGTTTCCTTCAGCAGCAC 60 157485747 157485768 GACCATGCTAATCTTCTCTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027731.1 ENSRNOG00000049396 ENSRNOT00000072988 2 1 1 60 17 42825638 42825657 TAGTTCAGCTGTTCGATCCT 59 42825597 42825617 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000056619 ENSRNOT00000087738 1 1 1 60 1 231901118 231901138 AGGTTGCTATCTAAGGTGACC 59 231901160 231901178 TGGGCAGATTGCATTACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000034522,ENSRNOT00000014713 2 3 4 80 3 140160700 140160718 TTTGCCGTGCACATATGTC 59 140160759 140184503 ATCATCATGGTCTTCTACCCTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058095 ENSRNOT00000086319 2 1 1 67 4 116894070 116894088 GTAGGTGTGGTGCTATCCC 60 116894021 116894042 CACACTGTAGACATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041725 ENSRNOT00000063478 1 1 1 60 10 36306374 36306392 GAAGGTAAGCAGGGTCAGG 60 36306416 36306434 AAGCCTTTCTTACCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.2 ENSRNOG00000050786 ENSRNOT00000073403 3 1 1 116 10 34317041 34317061 TTCCAGCTTGAGATAAGTGGT 59 34317137 34317158 ACAACAGAAGTTCAAGCAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053167 ENSRNOT00000079491 2 1 1 60 9 65918930 65918951 CTGGAACAGTATGGAGATTAGC 59 65918971 65918990 CTTCACAAATCTGCATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000054977 ENSRNOT00000084647 2 1 1 60 9 18736069 18736088 CTGAACATGCCTGGTTTCAC 60 18736108 18736129 AGTTCTATCTAGACCCAACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141967.1 ENSRNOG00000057189 ENSRNOT00000088433 1 1 1 80 7 78733997 78734016 CTCCGTGAACAAACAGTTCC 60 78734058 78738561 CCGTGAGTTCCTTGTTTCTC 59 Novel Rattus norvegicus 81 AABR07072711.1 ENSRNOG00000051964 ENSRNOT00000080235 3 1 1 80 2 235083554 235083572 TACCAGACGATGACAGGAC 59 235078866 235083513 CGCAGTCATCTTCATAGTTCAG 59 Novel Rattus norvegicus 81 AABR07071848.1 ENSRNOG00000060610 ENSRNOT00000078193 1 1 1 60 1 12952873 12952894 CTTGTGACCCGTAAAGATATCC 59 12952834 12952854 CTGGATCTTTCAGGTCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061134 ENSRNOT00000077411 1 1 1 60 4 132337462 132337485 GCTACAACCTCTAAATCTCAAGAC 59 132337425 132337448 CTAGAAGTGAGTAGATTTCAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103694487 ENSRNOG00000057166 ENSRNOT00000089271 3 1 1 108 X 63897892 63898088 CCAATGTAGTGGAAAGGTGC 59 63898155 63898177 ACTCTTCTTTGTAGGTGGTACAG 60 Novel Rattus norvegicus 81 AC118115.1 ENSRNOG00000033655 ENSRNOT00000040903 3 1 1 60 8 22063291 22063309 TCAGAAGACAAGGGTGCTC 59 22063332 22063351 TGTCGTTGTAATTGGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000055242 ENSRNOT00000078549 1 1 1 60 17 86914839 86914857 TTTGGAAGAAGGAGGGAGG 59 86914881 86914899 TGAGCAAACTTGGAATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.6 ENSRNOG00000056989 ENSRNOT00000089167 2 1 1 92 17 43689911 43689929 AGTCTTCTTAGGCAGCAGC 60 43689837 43689855 GATGAGGAGCTCAACAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053525 ENSRNOT00000080130 1 1 1 60 2 224903688 224903706 TTCCACTGCTAGAACCTCC 59 224903728 224903748 GAAGAAACACCATGACCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055824 ENSRNOT00000091726 2 1 1 65 1 62062210 62062230 CAGAGAAGATTAACATGGCCC 59 62062165 62062184 AAACACATGGAATGCTTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060964 ENSRNOT00000082389 2 1 1 72 2 189956148 189956166 GATGAGGCTCATTCTGTGC 59 189956094 189956113 ACAACACAATTATGCAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041877 ENSRNOT00000063630 2 1 1 67 X 10380740 10380758 TATCACACTGAACATGCCC 58 10380789 10380807 GTACTTAGCTAGGCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059486 ENSRNOT00000088858 1 1 1 60 4 118170936 118170954 TTCAAGCAGACGCCTAGAG 60 118170976 118170996 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059552.1 ENSRNOG00000049791 ENSRNOT00000071219 1 1 1 60 4 23645209 23645227 TCTCCACATACTTGCCAGC 60 23645252 23645271 ACCAGTCAGAATGACTACGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043654.1 ENSRNOG00000027022 ENSRNOT00000059785 3 1 1 146 19 34204647 34204665 GCTCTACAAGATCGTTCGC 59 34204517 34204535 GATGGCCATAAGAATGCGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054291 ENSRNOT00000082480 2 1 1 60 12 43997013 43997034 TGCGATACAGAAGAGATTAGCA 60 43996974 43996992 ACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060162 ENSRNOT00000089861 1 1 1 67 2 188408399 188408420 GCAGCACATATACTGAAATTGG 58 188408353 188408372 TGTGTCATCCTTACAAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056058 ENSRNOT00000086180 2 1 1 76 17 15377056 15377074 GACCTGTCTTCCCTTCCTG 59 15376998 15377017 GTACCAACCAAACAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056058 ENSRNOT00000086180 3 1 1 77 17 15377056 15377074 GACCTGTCTTCCCTTCCTG 59 15376997 15377016 GGTACCAACCAAACAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056775 ENSRNOT00000077669 2 1 1 63 3 99131094 99131112 GGCTGATGTGTCACATGTG 59 99131049 99131068 ACTCAGCATAGACGTAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059668 ENSRNOT00000086527 3 1 1 60 12 347052 347072 GATGAAGAATGCAGCTACCTG 59 347012 347031 TTCCATGATCAATGCGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115307.1 ENSRNOG00000059655 ENSRNOT00000079980 3 1 1 80 X 1855164 1855183 TAATCATCAGGACCATGCTG 58 1854963 1855121 TGTTGATGCCTTCCATCTG 58 Novel Rattus norvegicus 81 AABR07036567.1 ENSRNOG00000020112 ENSRNOT00000027236 3 1 1 60 12 48560805 48560823 CTTCTCCAATGCCATCCTG 58 48560844 48560865 CATCAAACAGAAGAATCCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000060358 ENSRNOT00000090349 2 1 1 80 X 11866187 11866205 GTAGTGTGCTAAACGAGCG 59 11866125 11866146 AGCAAAGGTTACTATCAAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109958.1 ENSRNOG00000021960 ENSRNOT00000030811 3 1 1 90 13 93560587 93560611 CACTCAGCTACTCTACAAATTTGAG 60 93560520 93560539 TCCAATTCGAACCTGGGAC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051769 ENSRNOT00000079188 1 1 1 60 X 96455359 96455378 GCAGTTATGGCTACTGTGTC 59 96455399 96455419 TAGACAAGAGCCTCTTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013412.1 ENSRNOG00000055035 ENSRNOT00000089472 2 1 1 116 2 236149835 236149867 AGAAGTTTCAAGGTTGTCGT 58 236149738 236149757 TAATCTTTGAGTCTCCGCAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054556 ENSRNOT00000082827 1 1 1 60 3 27527427 27527445 TATGTCACATGTGCGTCAG 58 27527466 27527487 GAACACAAGCATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052587.4 ENSRNOG00000061162 ENSRNOT00000080016 2 1 1 69 3 63929875 63929894 AATAACAAAGGCTCGCACTG 59 63929825 63929843 ATGTCCCTAAAGCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0663.2 ENSRNOG00000051216 ENSRNOT00000076358 3 1 1 60 X 65367948 65367968 CCTGCTGTCTTCATATGAGTG 59 65367987 65368008 AAGCCATAGAATAACTCCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060890 ENSRNOT00000081694 2 1 1 60 14 45812515 45812537 TAGGTCACATGAGCATTAGTAGG 60 45812477 45812498 AACAGCCTCTATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360296 ENSRNOG00000061094 ENSRNOT00000091278 1 1 1 80 X 73290598 73290619 CTCTGTAACTGAAGAAGACGTG 59 73289762 73290557 AAAGGTTTGAATGCGCCAG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052288 ENSRNOT00000087816 1 1 1 60 14 43689396 43689417 CTAGAATTGGAACCATCCTGAG 58 43689437 43689456 ATTTGCATGGCTTCCTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.1 ENSRNOG00000055241 ENSRNOT00000081203 3 1 1 259 3 110540885 110540903 TACAGTCTCATCTGGCAGC 59 110541127 110541145 GCTTCCTCTTCGTCTTCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066135.1 ENSRNOG00000055764 ENSRNOT00000077570 1 1 1 80 9 3817664 3817685 ATCATTGGAAACCAGATTCCC 58 3817722 3817745 GTTATGTATGTCCTTAATAGGGCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057603 ENSRNOT00000090692 1 1 1 60 1 82084759 82084777 GAGAAGATTAGCATGGCCT 57 82084801 82084819 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566337 ENSRNOG00000054790 ENSRNOT00000085431 1 1 1 60 2 194875273 194875291 CCTAACAAACCGCATTGAG 57 194875231 194875251 GCCCATCATTTCCTTAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052747 ENSRNOT00000091868 2 1 1 60 4 106621989 106622010 ATAGAGTCACTCCAGTTGTGAC 60 106622030 106622049 TAAATCTGTGCCACCTACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054470 ENSRNOT00000078716 1 1 1 60 1 192400752 192400770 TTGATTCGGCTCATGTGGT 60 192400789 192400812 CACTTGAAGTAATGAGGTAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000060695 ENSRNOT00000088583 1 1 1 60 1 100224545 100224563 CTGTGATGTTCAGCACTGG 59 100224587 100224605 CAAAGGTCCTGGGTAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054023 ENSRNOT00000088608 1 1 1 60 1 253580254 253580272 CCATAGAGGCATTGCTGGA 60 253580291 253580314 CTCCTCTACCATGTATTGATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016950.2 ENSRNOG00000056911 ENSRNOT00000082029 2 1 1 80 15 5428506 5428524 TTGTGAACTGCAAGTTCCC 59 5428442 5428467 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 AABR07036167.1 ENSRNOG00000045927 ENSRNOT00000074199 1 1 1 60 12 35318521 35318539 TGTCCATTCTCAAGCTCAC 58 35318479 35318497 CCCTATGACCATATGCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052040 ENSRNOT00000088823 2 1 1 60 2 240772931 240772953 GGAACGATACAGAGAAGATTAGC 59 240772893 240772911 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hhipl2 ENSRNOG00000056400 ENSRNOT00000077166 3 1 1 80 13 101823255 101824625 TTCCTTGGACGACATTCTG 58 101824669 101824687 CCACGGTAGACATAACCTC 57 Novel Rattus norvegicus 81 AC130862.3 ENSRNOG00000056968 ENSRNOT00000080692 3 1 1 87 X 105563552 105563570 AAGCATCTCCACTACGTGG 60 105563482 105563501 ATACCCATCCAAGCGTTCC 60 Novel Rattus norvegicus 81 AABR07070456.1 ENSRNOG00000014383 ENSRNOT00000019269 3 1 1 123 8 70908968 70908987 TTCTGCTATGACCCAGGTG 59 70908863 70908881 GTGTCTTCTGGAATTCGCC 59 Novel Rattus norvegicus 81 AABR07059171.1 ENSRNOG00000008946 ENSRNOT00000011839 2 1 1 60 4 6477780 6477799 GAACTTTGGCTCATTTCCGA 59 6477739 6477759 GGTCCATTCACATCTTTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058811 ENSRNOT00000080131 3 1 1 62 17 70657694 70657716 GAACGATACAGAGATTAGCATGG 59 70657736 70657756 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055733 ENSRNOT00000081390 1 1 1 60 17 88088165 88088183 AGCCAAGAGTCTAGCTGTG 59 88088123 88088144 TGGCAATCTGTATAGACTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060677 ENSRNOT00000087829 3 1 1 60 2 177973924 177973944 TACAGAGAAGATTAGCATGGC 58 177973964 177973984 CGGAACACTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054873 ENSRNOT00000082543 3 1 1 60 12 33875889 33875909 ATCGGGAAATAGACAGAGGAG 59 33875930 33875949 TGTGAATTTGCATGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052890.1 ENSRNOG00000043655 ENSRNOT00000068922 3 1 1 61 3 81106502 81106520 TACTACAAGTCCCAGGGTG 58 81106543 81106563 AGCATGCAATGCTCTTATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059570 ENSRNOT00000078833 1 1 1 60 17 43922806 43922828 GGAACGATACAGAGAAGATTAGC 59 43922848 43922866 CACGGAATTAGTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056120 ENSRNOT00000081666 3 1 1 62 2 55499896 55499914 CATGTGTCAGTAGGTGGCA 60 55499852 55499872 TGTCCATAGGTCAGAACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058387 ENSRNOT00000087844 1 1 1 60 1 254519560 254519578 TTGGTCATAGGTGGCAGAG 59 254519600 254519620 TTCATTGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054851 ENSRNOT00000081083 2 1 1 60 2 197209918 197209936 ATGAAGAACGCAGCTAGCT 60 197209957 197209978 TGTCCATTATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.2 ENSRNOG00000051080 ENSRNOT00000076463 3 1 1 60 X 68187757 68187776 AGGTGCATTAAGTTACTGGG 58 68187716 68187735 GATGCAAATCACATCTCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041998 ENSRNOT00000063751 3 1 1 60 10 3399557 3399578 CTTGATTATGACCAATCACCTC 57 3399518 3399536 GTATTAACCAGGCCCTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059140.1 ENSRNOG00000060116 ENSRNOT00000089932 1 1 1 60 4 4502146 4502164 TCCTCTGAGGTCTACTGTG 57 4502186 4502206 TGGAATGATCATCACAGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 1 1 1 60 2 78283229 78283248 TGATGTGAAATGGCAGTCAC 59 78283135 78283206 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056231 ENSRNOT00000079268 1 1 1 61 1 241574115 241574138 GGAATGATTCAGAGATTAGCATGG 60 241574155 241574176 GAAATACCCTGAATTTGCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058723 ENSRNOT00000085731 3 1 1 60 2 264523512 264523533 GGAGAAAGGCTTTATCTATGCT 58 264523550 264523572 GGTTAGTAGTCATTCAGATGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115159.1 ENSRNOG00000040383 ENSRNOT00000062136 2 1 1 60 10 35858123 35858142 TCTTTGAGGTCACAACTCCC 60 35858082 35858100 TGAGGAACAACTTGCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045036 ENSRNOT00000070303 3 1 1 60 2 66694885 66694906 GATCAAACCTGGTTAGTTGGAG 59 66694925 66694945 TACAGAGCTCCCTTATTACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057948 ENSRNOT00000086874 1 1 1 63 1 200157736 200157754 GATCCCAGCAGTACATGCA 60 200157781 200157799 TATCCTTGTACAGGGACCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048303.1 ENSRNOG00000049272 ENSRNOT00000071563 2 1 1 82 5 71467630 71467656 TCCAGGACTCAATGAAGAACC 60 71467694 71467718 GAAGATATTTACTGGTCCTTTGAGC 60 Novel Rattus norvegicus 81 AABR07003049.1 ENSRNOG00000037364 ENSRNOT00000056539 3 1 1 60 1 94988649 94988668 ATTTAGTGGGATGAACTCGG 57 94988691 94988709 ATAACCTCCCTTGGACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911249 ENSRNOG00000056251 ENSRNOT00000080740 1 1 1 113 1 85253162 85253180 TGACACTGAAGGTCTTGGG 59 85253257 85253376 GAGGCTCTGTACAGGTCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061110 ENSRNOT00000078781 3 1 1 61 2 27725948 27725970 GATACAGAGAAGATTAGCAAGGG 59 27725909 27725930 TCCTAACTTAATAAGCTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060992.2 ENSRNOG00000052923 ENSRNOT00000079328 3 1 1 60 4 102262053 102262072 GAGAGTCAGCTTCCATCTCC 60 102262091 102262113 GTGATGCCATTACTATGTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072203.1 ENSRNOG00000054282 ENSRNOT00000078363 3 1 1 100 10 104739575 104739598 GGAGTTCCTTAACTTCAAATCGAG 60 104739168 104739518 TTCTTCATTGTTCCTCTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052895.2 ENSRNOG00000053165 ENSRNOT00000082492 1 1 1 99 3 82374443 82374463 GAACCATAGCATTCTGACCTC 59 82374527 82374545 ATCACTGCTGCTAGAGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055881 ENSRNOT00000091833 3 1 1 60 1 115334029 115334048 TTTGATGGCAAAGAGGAGAC 58 115334068 115334089 AGAAGTTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061439 ENSRNOT00000080843 2 1 1 60 1 260133625 260133646 ATATGGCTCTAGTCTTGTGACC 60 260133665 260133685 AAACAGATGGAGAAACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000054893 ENSRNOT00000087735 2 1 1 60 1 164952947 164952967 AGTGATAGGAGCGGTTATACG 59 164952989 164953007 CATCTCCACGTACAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106947.2 ENSRNOG00000060070 ENSRNOT00000079475 2 1 1 81 1 168098047 168098066 CATCATTGCTTTAGCCTCCA 58 168097984 168098006 TAGCAAGAAGTCAGCAATAAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053951 ENSRNOT00000089926 2 1 1 64 10 111097587 111097605 AGAAGGGATTAGCATGGCC 60 111097541 111097560 TTAAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006740.1 ENSRNOG00000058869 ENSRNOT00000079650 3 1 1 60 1 250987765 250987783 TGCCTTACATGGGAAGGAC 59 250987802 250987825 TAGATAACTTCTCTACAGTGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004743.1 ENSRNOG00000050403 ENSRNOT00000074311 2 1 1 60 1 153772136 153772154 TCATGCATATGGGTGTGGA 59 153772177 153772196 GTGGAGACCAATAGAAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.3 ENSRNOG00000059963 ENSRNOT00000083564 1 1 1 80 8 69506163 69506188 TGAGAAGGTCAAACCTTAGGA 59 69506103 69506124 TGTTGAAGATATTTACTGGCCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055219 ENSRNOT00000089621 3 1 1 60 1 90959870 90959888 CTTGGCAAGTGTCTCTGTG 59 90959828 90959847 GAGAGTTTAGCTTCGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046771 ENSRNOT00000054229 2 1 1 60 3 41769675 41769694 CCCGATCTCTTCTGATCTCG 60 41769716 41769735 TCTCATCCAAGGACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044082 ENSRNOT00000069349 3 1 1 60 2 48907269 48907288 TCTTGGAAGCTAAGAAGGGT 58 48907306 48907329 CATAGAACTACAGATCTTCCACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061103 ENSRNOT00000089096 1 1 1 60 4 114258266 114258284 TAGACAAGCTACTGTGCCA 58 114258224 114258245 ATGAGTGTAAACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001516.1 ENSRNOG00000055981 ENSRNOT00000091196 3 1 1 80 1 48685102 48685204 TTTCTAGGTCCTTCCTCAGC 59 48685041 48685060 TCAAGGAGCTCTTCCATGAG 59 Novel Rattus norvegicus 81 AABR07060694.1 ENSRNOG00000057158 ENSRNOT00000084916 3 1 1 81 4 90050167 90050186 CTACCATCCTATTCGAGGCG 60 90050230 90050667 TTTGTTCCAGTTGCCAGTG 59 Novel Rattus norvegicus 81 AABR07028414.1 ENSRNOG00000049178 ENSRNOT00000073676 1 1 1 80 17 68389118 68389140 AGATTTCACCTCACATGCG 58 68389183 68389202 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07017141.1 ENSRNOG00000054783 ENSRNOT00000073371 1 1 1 60 15 12723331 12723351 GCTCTGTAAATACCTATGCCA 58 12723291 12723312 TTCATGTACTGCCTGTATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000054708 ENSRNOT00000088778 3 1 1 65 3 35389853 35389874 GATTGATCACAGTCAGTTACAG 57 35389809 35389828 ATGGAGTAGTGAGAAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055997 ENSRNOT00000090854 2 1 1 60 1 94204149 94204167 AGAAGTTAGCATGGTCCCT 58 94204107 94204125 AAACCATGGTACGCTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061339 ENSRNOT00000087864 1 1 1 60 1 280816856 280816879 CGATACAGAGAAGATTAGTATGGC 59 280816819 280816838 GAATGCTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059634 ENSRNOT00000088166 3 1 1 60 1 220109331 220109349 GCTTCCACTCTGAATGTGC 59 220109289 220109307 ATGCAGTCAAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060989 ENSRNOT00000078706 2 1 1 62 1 214429411 214429429 CCTAATCCCTGCTGGTCAG 60 214429455 214429473 TCTAGGATGCTCTGGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.1 ENSRNOG00000053144 ENSRNOT00000086887 2 1 1 60 3 61635907 61635925 CTCAGAACTCCAAGTCCAC 58 61635865 61635883 GGGCTCAAACACTTGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009373.1 ENSRNOG00000011429 ENSRNOT00000015194 1 1 1 87 2 94903192 94903210 AACTTACCAGAGGGAGCAC 59 94903054 94903141 CTTTCATGACGCTGAGCAC 60 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000083614 1 1 5 80 2 123754435 123754453 GGGACCTGTTCCTTACCTG 59 123754494 123757924 CTGGTAATGGAACATTGTTCCT 59 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000055643 ENSRNOT00000089117 2 1 1 60 12 6389211 6389229 TCCAAGGTGATTCCCTCTC 58 6389253 6389271 AAGTTGCTACGTCCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103694557 ENSRNOG00000052020 ENSRNOT00000085338 3 1 1 80 Y 794368 794389 AAGACTTCACTACCTACTCCAG 59 794428 800754 GTTGCTGTCATCATCCTTCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000050257 ENSRNOT00000040529 1 1 1 83 1 103146045 103146174 CCCATAATGAGACATGCACC 59 103146220 103146238 TAGCTTCCACCAGCTTAGC 60 Novel Rattus norvegicus 81 AABR07072371.1 ENSRNOG00000002200 ENSRNOT00000002990 3 1 1 60 14 10624421 10624441 GCTCACTTATCACTGGAACTG 59 10624463 10624481 CCTGGATGAGGAGAAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014756.2 ENSRNOG00000047135 ENSRNOT00000072268 3 1 1 63 14 30326696 30326715 GCAGATGTGTTTCCATTCCA 59 30326652 30326673 GAATACTGCAAGAGCAATAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127,ENSRNOT00000077423,ENSRNOT00000089439 1 3 4 84 1 49681981 49844387 CAGTACAGAACTGTGACCTG 58 49681916 49681934 GAGGCATTTGTTTCGTGAC 58 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000090521 3 1 4 98 1 49844451 49844469 GAAGTGGTTGCTAAGCGAC 59 49742749 49844391 CTCTGGACTCTGTACTGTCAG 59 Novel Rattus norvegicus 81 SNORA66 ENSRNOG00000060157 ENSRNOT00000082867 3 1 1 60 14 2861578 2861596 CTAGCTCTGCATGATGTGG 58 2861536 2861555 TCACCACAGTTACTCTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000055875 ENSRNOT00000079884 3 1 1 61 14 105906728 105906746 AAGCCCTCATGGAGTAACC 59 105906770 105906789 CCAGTACCCTGAGAAATGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059986 ENSRNOT00000083456 3 1 1 60 6 21808907 21808929 CGATACAGAGAAGATTAGCATGG 59 21808869 21808887 AACGCTTCAGGAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058354 ENSRNOT00000082373 1 1 1 60 6 47627164 47627184 GATTCAGAGAAGATCAGCACG 59 47627124 47627142 GAGCGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058884.2 ENSRNOG00000057943 ENSRNOT00000079811 2 1 1 80 7 141643215 141643234 AGATGGCACTCCTGTAACTG 60 141643277 141644319 AGTTCTGTATTGCCCTCGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054177 ENSRNOT00000089700 1 1 1 60 14 5803106 5803126 TACAGAGAAGATTAGTGTGGC 57 5803066 5803086 CGGAACTCTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0834.1 ENSRNOG00000051201 ENSRNOT00000076395 3 1 1 81 13 78500404 78500422 TGTGAGATGAAGTGCTGCT 59 78498743 78500360 CATCCAGGGACTCATCAGTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060427 ENSRNOT00000080298 2 1 1 60 12 49964976 49964998 CGATACAGAGAAGATTAGCATGG 59 49965018 49965036 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000061095 ENSRNOT00000085456 2 1 1 60 12 24679713 24679732 GAGATCACATTCCTCCTTGG 58 24679755 24679773 GAGAATGCTCCTCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059132 ENSRNOT00000088699 3 1 1 60 3 139747579 139747598 CCAGAGGCATAATAGGTGGG 60 139747538 139747556 AGATACAGCCTGTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053423 ENSRNOT00000071507 1 1 1 60 13 34148830 34148848 TTCTCTGAGGAGGAATGGG 58 34148871 34148890 TGACATCTCTGTACAAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kmt2b ENSRNOG00000055525 ENSRNOT00000080842 3 1 1 80 1 89023671 89023807 TGTGGGTGTCTACAGATCAG 59 89023610 89023628 TCGATGACCATCTCACCAG 59 Novel Rattus norvegicus 81 AABR07017669.1 ENSRNOG00000052737 ENSRNOT00000081778 2 1 1 97 15 29922270 29922481 ATTTAATTGGGTGAGCAGCC 59 29922192 29922212 CACTGAATGTGCAGTTGAGAG 60 Novel Rattus norvegicus 81 AABR07013288.4 ENSRNOG00000053387 ENSRNOT00000091475 2 1 1 80 2 231943166 231943365 GATCCAACACTGTAAAGGAAGG 59 231943405 231943424 TCTTTCAGAAGACGGTCCAG 60 Novel Rattus norvegicus 81 AABR07000159.2 ENSRNOG00000053710 ENSRNOT00000087944 1 1 1 60 1 1888949 1888971 CTGACTTACATAGTCCTTCTGAG 58 1888911 1888929 CCTGGCTCAATACTGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847,ENSRNOT00000083943 1 2 2 82 16 31301555 31301818 AAGAGCTGCCTATTCCAGC 60 31301491 31301509 ATGTGAGGAGCAAGGAGTC 59 Novel Rattus norvegicus 81 AABR07029956.1 ENSRNOG00000056777 ENSRNOT00000077529 1 1 1 80 10 61152536 61152555 CGCTTGGTATGGTGTATCTG 59 61152471 61152493 GTGCCACCACATACATCAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059222 ENSRNOT00000081487 1 1 1 60 3 17888229 17888247 GAGAAGATTAGCATGGCCC 58 17888187 17888205 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051940 ENSRNOT00000083893 2 1 1 63 5 6241058 6241077 AATGAGGTTTATCCAAGGCG 58 6241014 6241033 ACAAAGCATGAGCTTTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017748.2 ENSRNOG00000053763 ENSRNOT00000090632 3 1 1 80 15 30621418 30621613 GATTTGCTGGGTGAAAGGA 58 30621656 30621675 CTCAGAACAGAACTGGTTCC 58 Novel Rattus norvegicus 81 AABR07017768.6 ENSRNOG00000059778 ENSRNOT00000088305 3 1 1 81 15 30841197 30841387 GATTTGCTGGGTGAGAGGA 59 30841430 30841450 TCTCAGAACAGAACTGGTTCC 60 Novel Rattus norvegicus 81 AABR07061868.1 ENSRNOG00000037266 ENSRNOT00000056335 3 1 1 60 4 150030221 150030240 TCACTGATCAATGCTACCGT 59 150030180 150030198 TCAGAGGCTTGTGGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041857 ENSRNOT00000063610 1 1 1 60 12 45113855 45113874 TCTCCTCTGATCTGAGAAGC 58 45113814 45113834 CGGTCTCCCATCTAAGTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt2 ENSRNOG00000051905 ENSRNOT00000083039 1 1 1 80 4 45325046 45325065 GATGCCAAGGAAAGGAAAGG 59 45309868 45325004 CTTTACAGCCTTCCTTCCAG 58 Novel Rattus norvegicus 81 AABR07003935.11 ENSRNOG00000050219 ENSRNOT00000072164 1 1 1 60 1 121175506 121175524 TTTGATCAGTCTGGTTGCT 57 121175464 121175484 CTTTGATTATTCCCAGGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000052392 ENSRNOT00000085863 1 1 1 60 2 28343111 28343129 GATGGCAGAGTCCTCACTG 60 28343149 28343171 CTTAAGGGACAACCTTTATCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000051787 ENSRNOT00000078042 1 1 1 60 1 56880589 56880609 GACAACCGAATTCAAGAACAG 58 56880549 56880569 TCAGTGTAGTCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044959.1 ENSRNOG00000056298 ENSRNOT00000092166 3 1 1 79 20 28354908 28354926 ATCCTTCTGGACGACTCTG 59 28354845 28354863 CTATACCCACAGCTGTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030841.1 ENSRNOG00000057615 ENSRNOT00000082089 2 1 1 60 10 106022237 106022258 GGGTTTGAATTTGCAGTAACAG 59 106022274 106022297 GTATCATACATGACCACCAAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030841.1 ENSRNOG00000057615 ENSRNOT00000082089 3 1 1 60 10 106022242 106022263 TGAATTTGCAGTAACAGGTGTG 60 106022281 106022302 TTGCAGTATCATACATGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057442 ENSRNOT00000085558 2 1 1 61 3 177169958 177169979 CCATATACCAACATTGAACCGA 59 177170001 177170019 GTGTCTTCCTTGCACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055350 ENSRNOT00000089137 1 1 1 60 1 254303900 254303921 GGACAATTCAGGGATGATTAGC 59 254303861 254303879 AACCTACTCACATGCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.2 ENSRNOG00000059506 ENSRNOT00000084156 1 1 1 80 X 128182887 128182909 AGATTTCACCTCACATGCG 58 128182952 128182971 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053777 ENSRNOT00000080526 1 1 1 61 2 71792443 71792461 CATAGAGGTGTCCCAGGTG 59 71792486 71792504 TAGCCTACTCTCACTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060276 ENSRNOT00000081894 2 1 1 60 2 189311889 189311907 CTAAAGGCGGGAAACTCGA 60 189311847 189311866 GGAGAGCACAAACATAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108631.2 ENSRNOG00000055424 ENSRNOT00000082046 2 1 1 60 1 228450817 228450838 ATATTTGTGGAGAGTGTCACAC 59 228450778 228450796 TTGCATCTGATTGGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058542.1 ENSRNOG00000057768 ENSRNOT00000087720 2 1 1 86 7 123908417 123908735 TATAAAGGGCCCTTCAGCAC 60 123908350 123908373 GCCCATTCTGTATATTACTTCCTG 59 Novel Rattus norvegicus 81 U5 ENSRNOG00000061093 ENSRNOT00000089597 1 1 1 60 5 136063970 136063991 CAGATCGTATAAATCTTTCGCC 58 136064011 136064030 ACTCAGAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000061093 ENSRNOT00000089597 3 1 1 62 5 136063970 136063991 CAGATCGTATAAATCTTTCGCC 58 136064012 136064032 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017597.2 ENSRNOG00000054269 ENSRNOT00000077709 1 1 1 60 15 29097152 29097170 TATGTCCAACACCCTGGAG 59 29097193 29097212 TGTTGTTGGCTGTTGTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017597.2 ENSRNOG00000054269 ENSRNOT00000077709 2 1 1 60 15 29097035 29097056 GAGAGGACACATGGAAATTCAG 59 29097077 29097095 TCCCTTCTGAAAGGGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000059407 ENSRNOT00000089077 1 1 1 60 2 217476775 217476796 ACGCCTCATATAGTAACTTGTG 58 217476815 217476835 CCACAGACCTAACAAACAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.2 ENSRNOG00000054267 ENSRNOT00000092212 1 1 1 87 15 29291271 29291420 TCTTAGTGTTTGGAGGAAGCA 59 29291204 29291222 TTCACAGTCAGAGAAGCCC 59 Novel Rattus norvegicus 81 AABR07028779.1 ENSRNOG00000016710 ENSRNOT00000022385 1 1 1 60 17 85948251 85948269 GTCTGCTGGAGGTCATCTG 60 85948209 85948227 CCTATGGAACTGTCTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 1 1 1 62 15 31951126 31951336 TCTGGCTTCAACTGAGTGG 60 31951362 31951380 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058967 ENSRNOT00000079953 2 1 1 60 1 174774330 174774352 CGATTCAGAGAAGATTAGCATGG 60 174774372 174774390 AACGCCTCACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD127 ENSRNOG00000055941 ENSRNOT00000080348 1 1 1 68 6 86805578 86805599 GCAACTGTGATGAAAGATTTGG 59 86805628 86805646 TAGAGGGACTGTTGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0635.1 ENSRNOG00000051188 ENSRNOT00000075897 1 1 1 60 10 64592544 64592563 GAAGACAGGTTTGATGCCAG 59 64592503 64592523 GTTTGAGAAGACATGCTGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052756 ENSRNOT00000081082 3 1 1 63 1 80369851 80369869 CTTCTTCGGATTGCTGACC 59 80369806 80369825 GCTACCACAAATTATGCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061908 ENSRNOT00000088275 2 1 1 60 1 190338272 190338290 TCGGTCAAGGGTATACGAG 58 190338314 190338332 TTCGAGAGCTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547954 ENSRNOG00000051364 ENSRNOT00000076931 1 1 1 81 10 70134365 70134384 CCTTAAGTCGGCTTTGTGAG 59 70133707 70134321 TGATGAAAGGGCTGGACTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061517 ENSRNOT00000092070 3 1 1 80 3 94518646 94518664 CTTAGAGGCATTGCAGGTG 59 94518705 94518726 CTGAGCATAGACATATCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052605 ENSRNOT00000090986 2 1 1 60 5 118553604 118553623 TACAGAGATTAGCATGGCCC 59 118553646 118553664 AATATGGAACGCTTCACGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061725 ENSRNOT00000086558 1 1 1 60 1 150690420 150690440 GCTGGTATCTTCTTCCTTCCT 59 150690461 150690480 CTGAGAATGGCGATTTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061725 ENSRNOT00000086558 2 1 1 60 1 150690420 150690440 GCTGGTATCTTCTTCCTTCCT 59 150690460 150690480 CTGAGAATGGCGATTTAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060033 ENSRNOT00000091770 2 1 1 60 1 30027008 30027027 CTAGAGGCATTACAGGTGTG 58 30027048 30027068 TCTCTTCTCTGCCACTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032751.1 ENSRNOG00000060359 ENSRNOT00000077553 1 1 1 148 18 79854916 79854934 CTTAGTCACGCAAGTCCAC 59 79855048 79855066 AGAAGTATCGCCACCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058901 ENSRNOT00000083478 3 1 1 60 13 39500454 39500475 CTAGAGACTTCTCAGGTATGGT 58 39500415 39500433 CTCCTCTTTGCCACCTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053909 ENSRNOT00000087707 2 1 1 60 20 37370376 37370395 TAGAACCTCCAAACAAGCTC 58 37370416 37370436 CATGTGATCTCTTCAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055690 ENSRNOT00000080297 3 1 1 61 6 47324019 47324040 AGTTGGATGAAAGAAGAGACAC 58 47323979 47323999 ATTCAGATGACCATAGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051902 ENSRNOT00000088911 2 1 1 60 13 57583374 57583393 CTTATCCATTGCACTCTGGA 57 57583333 57583352 TCGAGTTTCTCACATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051348.1 ENSRNOG00000059455 ENSRNOT00000081193 3 1 1 80 3 5328190 5328208 GACTTTGCTATTGCTGCCC 60 5326064 5328148 GAACATGTTTCGACCCATGAG 60 Novel Rattus norvegicus 81 SNORD70 ENSRNOG00000057685 ENSRNOT00000090276 2 1 1 60 20 43426120 43426141 GAAGTATTTCCTTTGGAACCGA 59 43426162 43426180 TGTCTCAGTGATAGTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006504.1 ENSRNOG00000031086 ENSRNOT00000042738 2 1 1 60 1 237575186 237575205 AGAAGATAATGGCGTTCCAG 58 237575228 237575246 AGCTTCATTTGTCGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057428 ENSRNOT00000087881 1 1 1 60 5 128142902 128142921 GTGGTCTCTTTCAACAGCAC 60 128142861 128142879 GCCATGCTAATCTTCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000060589 ENSRNOT00000086222 3 1 1 60 6 23448740 23448760 TGCTGTGATGACTTTCATTGG 59 23448700 23448719 AAGAGAAGAGGCATCATGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054189.1 ENSRNOG00000033100 ENSRNOT00000044465 3 1 1 60 3 143828974 143828994 GCTACTGACAAGAATGATCCC 59 143829015 143829034 GCTCATTCAGGTAATGCGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028970.2 ENSRNOG00000056130 ENSRNOT00000080445 2 1 1 99 10 1214859 1214877 ACCCACTCTGAACGAAAGG 60 1220434 1221007 CTTATTATATCCTGTGCTCACAGAC 59 Novel Rattus norvegicus 81 AABR07014983.3 ENSRNOG00000052897 ENSRNOT00000081849 2 1 1 149 14 42717912 42717932 GTCTCATATTTCACAGCGCTC 60 42718043 42718066 TGTCGGGTATTTATTTCTCTGC 59 Novel Rattus norvegicus 81 U6atac ENSRNOG00000056866 ENSRNOT00000080054 1 1 1 60 10 76580415 76580434 CATTCCTCTTGACAAGAGCC 59 76580374 76580394 CACAAAGTGGGTGGTAATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2bh ENSRNOG00000058187 ENSRNOT00000086538 3 1 1 62 17 44520027 44520045 TTCGTGAACGACATCTTCG 58 44519983 44520001 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000059616 ENSRNOT00000090027 1 1 1 60 3 76575119 76575137 ATGTAAGAGACCCTTGGGC 59 76575077 76575095 ATGAAGTAGGTGGCAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017110.1 ENSRNOG00000005869 ENSRNOT00000007696 1 1 1 60 15 11650848 11650866 GTGCTGATGAACCAATGAC 57 11650890 11650908 AACTTCCACCGATTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051641 ENSRNOT00000077515 3 1 1 71 14 17256620 17256638 ACAAGAATGGAGGAGTCCG 59 17256567 17256585 GTTTGATGCACAACCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048280.1 ENSRNOG00000017640 ENSRNOT00000023713 3 1 1 60 5 70749642 70749661 AGAACTTTGGCTCATTTCCG 59 70749601 70749620 GTCCATTCACATCTTTGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054915 ENSRNOT00000083685 3 1 1 60 1 168652598 168652616 TGTTGGTTTCAAGCAGACG 59 168652556 168652577 GTTCAGGTTAGCCAATAAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057896 ENSRNOT00000084967 2 1 1 60 3 58785387 58785406 GCATGGGTTTGGATTTATGG 58 58785346 58785368 CTAGCATGGGATACTATGAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 2 1 1 62 4 103403549 103403569 AGCCTGAAGATATTGCAACCT 60 103403091 103403528 TTATCACTGTGGGAGGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060163 ENSRNOT00000086566 2 1 1 60 5 135496262 135496281 CACAGAGAAGGTTAGCATGG 58 135496301 135496322 ATGGAAGCTTCAGGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 1 3 4 133 9 81644546 81644564 CAAAGCCAAGGATCACCAC 59 81644661 81645112 TATCCTCCAACCGGAAGGA 60 Novel Rattus norvegicus 81 AC095695.2 ENSRNOG00000056638 ENSRNOT00000085180 1 1 1 60 10 57676001 57676020 AGATGGCTCGTGGTTAAGAG 60 57675960 57675978 GCTGGGAATTGAACTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095695.2 ENSRNOG00000056638 ENSRNOT00000085180 2 1 1 60 10 57676001 57676019 GATGGCTCGTGGTTAAGAG 58 57675959 57675977 TGCTGGGAATTGAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054779 ENSRNOT00000083598 2 1 1 60 10 38811712 38811730 CATGTATGTCCCTTGCCCA 60 38811670 38811689 TATCTGGAGGTTCTAGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060244 ENSRNOT00000081528 3 1 1 60 5 135207862 135207884 GATACAGAGAAGATTAGCATGGC 59 135207824 135207842 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041453.1 ENSRNOG00000055211 ENSRNOT00000084149 3 1 1 63 X 130664068 130664086 CCAGCATTTGTTGTCACCC 60 130664021 130664040 CTGAGATTTCACCTCACACC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA62 ENSRNOG00000058284 ENSRNOT00000081726 2 1 1 60 10 111019057 111019078 CCTATAAGGATAGATGAGTGGC 57 111019018 111019036 CACTCACTGGACCAAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051939.1 ENSRNOG00000054249 ENSRNOT00000088418 3 1 1 60 3 29600452 29600470 GAGTGAGCTGGAAGAAGGG 60 29600491 29600512 GCTCCTGTCTTGTCATTTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059188 ENSRNOT00000085047 3 1 1 60 15 71071972 71071991 ACAGAGAAGATTAGCATGGC 58 71071931 71071950 TTGCTCCTCTTGTTCATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060474 ENSRNOT00000091544 2 1 1 60 10 72243986 72244008 GATACAGAGAAGATTAGCATGGC 59 72243948 72243966 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057108.1 ENSRNOG00000059252 ENSRNOT00000070974 3 1 1 80 7 55777477 55777500 AGATTTCACCTCACATGCGA 60 55777541 55777561 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07058936.1 ENSRNOG00000052450 ENSRNOT00000089690 2 1 1 111 7 144725349 144725370 CCAGAATTCAGAGCTCTATCCT 59 144725446 144725464 CTACAGAGCATCGGAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027811.1 ENSRNOG00000051758 ENSRNOT00000087643 2 1 1 66 17 44738866 44738884 AGAAGACTCGCATCATCCC 59 44738914 44738932 AGTTTGTTGAGCTCCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058098 ENSRNOT00000091380 3 1 1 60 19 5590758 5590780 CGATACAGAGAAGATTAGCATGG 59 5590720 5590738 AACGCTTCACGAATATGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056909 ENSRNOT00000091047 2 1 1 60 19 18783409 18783428 TGACTACTGTGTCACTTGTG 58 18783448 18783469 GGATATAGACATAGCCTTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000077046 3 1 2 86 2 157070080 157070511 AGCAATTCTGGACATGCTG 59 157070012 157070032 CACAAAGTTATACTCGGAGGT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055571 ENSRNOT00000085498 2 1 1 60 3 34555961 34555982 TGCCAATAGAGATAATGCAGGT 60 34556001 34556021 TTGTGTCACAGACTAATCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566029 ENSRNOG00000052725 ENSRNOT00000084666 1 1 1 80 7 125368100 125378975 CATGCACAACAACTACACTG 58 125368039 125368057 AGTAGATCCAAGACCAGCA 58 Novel Rattus norvegicus 81 U4atac ENSRNOG00000057270 ENSRNOT00000090418 3 1 1 61 13 34437825 34437843 GAACGAATAGTGAGGGCAG 58 34437782 34437800 AGAGCTCTAACCGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045307.1 ENSRNOG00000046774 ENSRNOT00000071250 2 1 1 80 20 42152141 42152161 GAACTCAAGAAGTTAGACCGC 59 42152200 42152223 CTCAGCTGTGAATTTGTTTAGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044284 ENSRNOT00000069551 2 1 1 60 X 71782919 71782940 AGTACCAGATCTCATGTGATCC 59 71782880 71782900 GTCCCATTACTAACCAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055731 ENSRNOT00000088894 1 1 1 60 1 221848827 221848846 CTCTGAATGCAGCCAATGTC 60 221848786 221848804 GTTGTAACTAGCCACACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000056183 ENSRNOT00000086099 3 1 1 81 10 104084166 104084185 CCTGCTTTCCTTTGACTGTG 60 104084104 104084125 GCAGTTACTCTGCTAATGAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057067 ENSRNOT00000081232 2 1 1 62 5 156191671 156191689 TCTGAGACGCGATTATTGC 58 156191715 156191733 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU6-53 ENSRNOG00000053218 ENSRNOT00000085935 2 1 1 60 13 44049623 44049641 TGCTAATACTGAGCCACCA 58 44049665 44049683 GTTAAACTCACTGGCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058826 ENSRNOT00000088154 3 1 1 60 1 270022561 270022579 TGAGGGTGATCTAGCTGTG 59 270022519 270022538 AGATGTGCTGAGTCATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060279 ENSRNOT00000091836 3 1 1 66 13 65288983 65289001 GACTGCTGTGTCACATGTG 59 65288935 65288956 AACATTGAGCATAAACAGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052543 ENSRNOT00000079016 1 1 1 75 13 49593486 49593504 TAGAGCCATTGCAGATGTG 58 49593429 49593447 GAACAGAGTTTGGACGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.2 ENSRNOG00000051082 ENSRNOT00000077029 2 1 1 60 X 73557119 73557137 ACCTATGGGTGACTTTGTG 57 73557160 73557179 TTAAGTTGGTCAGTGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000059035 ENSRNOT00000081696 2 1 1 60 18 49568724 49568744 TATATCAATCAGTGGCAGAGC 58 49568766 49568784 AGCTAGGCATCAAGCTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058844 ENSRNOT00000083584 2 1 1 60 19 44103805 44103826 ATGATGCAGAAACTAGTATGGC 59 44103845 44103865 GGAAGGCTTCATGGATTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057937 ENSRNOT00000086070 2 1 1 61 19 56242974 56242995 CAGATCGTATAAATCTTTCGCC 58 56242934 56242953 GACTCACAGTTGTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052692 ENSRNOT00000082272 2 1 1 60 15 4063860 4063884 CCTATACTGACTGTATAGAAAGAGG 58 4063824 4063844 TAAGGGATGGATGTGTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052692 ENSRNOT00000082272 3 1 1 60 15 4063891 4063910 TCCTTATGCTTACCACAGGT 59 4063850 4063874 GCATGTCTATCCTCTTTCTATACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057539 ENSRNOT00000090401 1 1 1 60 6 52873615 52873634 GTCACATCTGCATCGATAGG 58 52873657 52873675 CAGAACACTGAGCAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057990 ENSRNOT00000090954 1 1 1 64 15 110160726 110160744 AGAGAAGGTTAGCACTCCC 58 110160772 110160790 GTATGCGTGTTGTTAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064253.1 ENSRNOG00000060718 ENSRNOT00000090441 2 1 1 80 6 71446984 71447007 GAGATTTCACCTCACATGCG 59 71446923 71446942 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 1 1 1 60 4 155169757 155169779 CAAGACTCCCATTATGATCCA 57 155169801 155169819 ATGAGTTCTCTGCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000055067 ENSRNOT00000072497 3 1 1 60 19 56338809 56338827 CCCGATCTCGTCTGATCTC 59 56338767 56338787 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053326 ENSRNOT00000080469 1 1 1 61 10 65514771 65514789 GTGCTCCTTATAGTGGCAC 58 65514728 65514746 GTCCTCCTTAAGCAGGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053136.1 ENSRNOG00000060735 ENSRNOT00000091164 2 1 1 61 3 93648449 93648467 GAGAAGCTGTGTCCTCTCC 60 93648492 93648510 CAAACAGGTCAGAGGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057467 ENSRNOT00000081742 3 1 1 70 5 133644746 133644764 TCCACTGTACTCCAGATGC 59 133644694 133644712 AACAAATCATGCAGCCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054735 ENSRNOT00000090672 1 1 1 67 15 73946297 73946315 GCATGCTATGTCACATGTG 57 73946343 73946364 GAACACTGAACAAAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065485.1 ENSRNOG00000060077 ENSRNOT00000089365 2 1 1 80 6 130670080 130670103 GAGATTTCACCTCACATGCG 59 130670019 130670038 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056234 ENSRNOT00000091233 3 1 1 60 5 123058858 123058876 GATGAAGAATGCAGCCAGC 60 123058899 123058918 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055291 ENSRNOT00000079574 2 1 1 60 4 102866482 102866500 CCACCTACAGGTAAAGCAG 58 102866440 102866459 CTTCTATGCCACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 2 1 1 64 13 52266800 52266819 GACCAGATGCCAAGATGGA 60 52266754 52266775 AATGTCCTCTATTGTCATCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054361.1 ENSRNOG00000031275 ENSRNOT00000051667 3 1 1 60 3 149943072 149943090 CCACATGGGAGTTTCTCAG 58 149943030 149943048 CCATCCTGTTTCAGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076920,ENSRNOT00000076871 3 2 2 80 X 74334763 74334872 CCCTTACGGGAACAATCCT 59 74334701 74334720 CTGCTGGAATGGAATGTAGC 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000055100 ENSRNOT00000087935 3 1 1 60 7 45339163 45339185 TATATCAATCAGGGACAGAGCAG 60 45339204 45339223 AGTCAGTTACCAAGCTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060700 ENSRNOT00000080566 2 1 1 60 3 167017072 167017090 ACATCCGATGGTGAAGGTG 60 167017030 167017051 TGGTAAGAACGGATACTACACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058823 ENSRNOT00000087885 1 1 1 60 18 20841859 20841877 ATTTGTCGGTGGCAAAGAG 59 20841897 20841919 CATTCATAGGTCAGAACACTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053120 ENSRNOT00000089649 3 1 1 79 15 53961176 53961197 GTGATACCATGGTCATAAAGGT 58 53961237 53961255 ATCATGCAGTGACTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055874 ENSRNOT00000077272 1 1 1 61 10 72895504 72895522 AACAGGACTGATTCTGCTG 58 72895461 72895479 ATAGTGGTGAGGGAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000056736 ENSRNOT00000077141 2 1 1 60 10 47471482 47471501 TGGTGCTGCTCCTATATCAG 59 47471441 47471460 AGCTAGGATGAACAAAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 2 2 2 83 6 139865495 139911804 TTTGAAAGGTGTCCAGTGTG 59 139865431 139865449 CAGGAGAGTTTCAGGGACC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060621 ENSRNOT00000081836 2 1 1 60 18 2725221 2725243 GGAACGATACAGAGAAGATTAGC 59 2725263 2725281 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058303 ENSRNOT00000081219 1 1 1 60 7 125509687 125509707 ATACAGAGAAGGTTAGCATGG 57 125509727 125509747 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036732.1 ENSRNOG00000057227 ENSRNOT00000090671 2 1 1 82 X 1062006 1062024 GAAGTTGGAGCAAGGAGAG 58 1036508 1061962 TAATCCTAAACTTCCCACCTG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000052989 ENSRNOT00000083014 2 1 1 60 18 27933517 27933539 GATACAGAGAAGATTAGCATGGC 59 27933479 27933497 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000056958 ENSRNOT00000083715 1 1 1 64 18 24631280 24631298 AAACAGCACTTCTGGTGAC 58 24631234 24631252 CTTGTCACAACACCGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033920.1 ENSRNOG00000031634 ENSRNOT00000048199 1 1 1 60 11 44367473 44367491 CGAAACATCAAAGGCCCTG 60 44367431 44367451 CTCTTTCTGACTCGAACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052888 ENSRNOT00000078648 1 1 1 60 18 24205979 24205998 TTAGAAGCATTGCAGGTGTG 59 24205938 24205957 CTCCTCTTTGTCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058297 ENSRNOT00000082526 3 1 1 60 3 7177505 7177524 TACAGAGGTTAGCATAGCCC 59 7177546 7177565 ATATGGAATGCTTCACAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 1 3 3 81 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016327 74016345 GATTCTTTGGCCATGTGGA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060592 ENSRNOT00000078062 3 1 1 61 4 168018483 168018501 GAGGGAGGCTATGTCTGTG 59 168018440 168018459 TACGCTGCTTATCATTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055774 ENSRNOT00000081532 1 1 1 69 X 96926262 96926280 ACCACCTACAGGTATAGCA 57 96926211 96926229 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060859 ENSRNOT00000091433 1 1 1 60 4 23688773 23688792 CAGTGTGGTATTGTAAGCCT 58 23688732 23688752 GGTTCATGCATAAGGAATGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058045 ENSRNOT00000077281 1 1 1 60 4 141216968 141216988 GACAACCTTCACGGAATAGAG 59 141217009 141217028 GCACAGCTACTCGTATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054707 ENSRNOT00000084599 1 1 1 73 15 480038 480056 CCTTCAGCAGCACATACAC 59 479983 480001 TATGTCATCCTTGTGCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052048 ENSRNOT00000085173 1 1 1 60 15 101593042 101593063 AGTACAGAGTAGATTAGCACGG 59 101593003 101593022 GAATGCTTCACGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055203 ENSRNOT00000087198 1 1 1 60 15 36193679 36193701 TCAGTCAAGGGTATATCAGTAGC 59 36193720 36193739 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055203 ENSRNOT00000087198 2 1 1 60 15 36193672 36193690 CCTGTCTTCAGTCAAGGGT 59 36193713 36193732 GCTTGTTTGGAGGTTCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058360 ENSRNOT00000088631 3 1 1 60 15 13852716 13852734 GACCCTAGACATGTTGCAG 58 13852674 13852693 TCTCTGTCATTTACTGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053066 ENSRNOT00000090464 3 1 1 60 15 3210351 3210372 GACAAACTCTCAAAGAACACAG 58 3210312 3210333 TAGACTAGTCGAAGAAAGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055399 ENSRNOT00000091870 3 1 1 60 7 104532909 104532927 TCATTTCAGAAAGGCTGCA 58 104532867 104532888 TCTTTGGCCATGGTATTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056567 ENSRNOT00000078132 2 1 1 60 1 197930691 197930710 TAGGCAGATAGCCTCATCTC 58 197930650 197930668 CTGAGTGAACAGCTTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055101 ENSRNOT00000084346 2 1 1 60 15 66479591 66479609 GGATGCTGTGTCACATGTG 59 66479629 66479651 GAGCATAGAAATAACCCGTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061532.1 ENSRNOG00000046964 ENSRNOT00000075370 2 1 1 64 4 132351442 132351462 CACATGTATGTCTGTATGTGC 57 132351488 132351506 TACATGCTCATGCACATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 2 1 1 77 1 234836119 234836140 ATCATTGACTCAACTGTCGA 57 234836061 234836080 CATTGAGTCCTGGATTTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061550 ENSRNOT00000077400 1 1 1 60 20 29265885 29265903 CCGATGTGGCTGATATGTC 58 29265843 29265861 AGACACAGCCTATCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.2 ENSRNOG00000036381 ENSRNOT00000017084 3 1 1 68 15 40522954 40522975 AAGAACAGTATCTCAGCTACAG 58 40522907 40522925 TTCTCCTGGCTTCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0647.2 ENSRNOG00000051221 ENSRNOT00000076201 2 1 1 80 8 64852335 64855080 GGATGTCTATATGATACACCAGC 58 64852277 64852296 GGACTGATGGCATTATTCCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055470 ENSRNOT00000080483 2 1 1 60 20 45494474 45494496 GATACAGAGAAGATTAGCATGGC 59 45494515 45494534 GAACGCTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000060835 ENSRNOT00000086012 2 1 1 60 15 66966234 66966253 TCTATGCAGTAGCCTCTTGC 60 66966275 66966294 TCCCTCTTACCTTCCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061200 ENSRNOT00000088436 1 1 1 60 15 85171660 85171679 TTGGTCAAGGGTATACGAGG 59 85171619 85171637 ACTGAGAGCCTGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132539.1 ENSRNOG00000052063 ENSRNOT00000079648 1 1 1 84 8 119261889 119261907 TAGAGGAGGACTGTGAGCA 59 119261955 119262138 CTGAAGAAGTGCTCCTCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057947 ENSRNOT00000081680 3 1 1 61 15 7715579 7715597 TGTCATTAGGTGCACAGAG 57 7715536 7715555 GTTCATAGGTCAGGACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058865 ENSRNOT00000083838 2 1 1 61 15 81606798 81606821 CCTACCACTAGAGTTATTTCAGGT 60 81606760 81606780 TCTGCAACCTACAACTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045535.1 ENSRNOG00000050094 ENSRNOT00000071513 1 1 1 60 20 50877751 50877769 AATCCTCTTCCCTGGAGTG 58 50877709 50877730 ACCAAAGATTGTCTGAAGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060394 ENSRNOT00000092046 3 1 1 60 4 98579964 98579986 CTGGAACGATAGAGAAGATTAGC 59 98580006 98580024 CTTCACCAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000059267 ENSRNOT00000082651 1 1 1 60 6 95456391 95456414 GCTTGCATATTCCTATGACTTCTC 60 95456354 95456373 CATGGTTTGTCTCCTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051751 ENSRNOT00000082068 2 1 1 60 11 85393950 85393969 AACATTGCAGCTGCTATGAC 59 85393909 85393929 AGACACTGTTTCTCCTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055086 ENSRNOT00000088129 2 1 1 60 5 18803928 18803946 ACTAGGTGGCAGATAGAGG 58 18803886 18803904 CATTCAGTTGTTCGCTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041762 ENSRNOT00000063515 1 1 1 60 11 37986785 37986803 CTAGGGCTGTACTGCTCTG 59 37986743 37986761 GACTCTGCTTAGCTTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.2 ENSRNOG00000056126 ENSRNOT00000081820 2 1 1 85 5 58218020 58218042 CAAAGGGTATCATAATGCCAC 57 58217955 58217974 GTGGACTTGTTCACATTTGG 58 Novel Rattus norvegicus 81 Rn60_X_0720.1 ENSRNOG00000051130 ENSRNOT00000076668 1 1 1 145 X 71127772 71141623 TGATGAAGAACTCTTCTTCAGC 59 71141729 71141747 TCCATCCAGTCATTGGAGG 59 Novel Rattus norvegicus 81 SNORA51 ENSRNOG00000055087 ENSRNOT00000091262 1 1 1 64 19 50683577 50683595 ATAGAAAGGAGGCAGAGCA 58 50683623 50683641 TAGATCAGGCACAATGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041708 ENSRNOT00000063461 2 1 1 60 7 77652760 77652780 GAATGCACCCAATCTCATCTC 59 77652800 77652820 CAAGTACTAACCAGGACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060871 ENSRNOT00000087024 3 1 1 60 5 5838818 5838839 GATACAGAGAAGCTTAGCATGC 59 5838860 5838878 GAACGCTTCATGAACTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.2 ENSRNOG00000055713 ENSRNOT00000078323 3 1 1 60 11 29026747 29026766 GGTAGCTATGGTTATGGCTG 58 29026706 29026727 AGCCATAAGACCAATATCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032661.1 ENSRNOG00000026428 ENSRNOT00000031932 2 1 1 60 18 76340318 76340337 GTTGGCTCTTGTCTTCAACG 60 76340360 76340378 TCCTGGTCAACGATCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042891.1 ENSRNOG00000047770 ENSRNOT00000073653 1 1 1 68 19 14007353 14007371 GAGATCCAGCTGTAAGGCA 59 14007403 14007421 ATGGTACCACCACAAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059562 ENSRNOT00000078558 1 1 1 60 7 8733944 8733963 AGTTGTGACTGCTGTATCAC 58 8733980 8734004 CTGAATGTAGAAATAGCCTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.1 ENSRNOG00000046131 ENSRNOT00000074084 2 1 1 60 11 36576740 36576758 TGTCCTGGAACTCACTCTG 59 36576782 36576800 AGAAGCAGGTGGATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052195 ENSRNOT00000085290 2 1 1 60 5 22316548 22316568 AAGCAATACAGGGAAGATCAG 58 22316589 22316608 TGCTTCATGAATTTCATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056622 ENSRNOT00000079147 3 1 1 60 7 15854145 15854165 TGTCACTCCCATTGATTACTG 58 15854185 15854205 AACTGTAAGGGAACAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051685 ENSRNOT00000091779 3 1 1 61 9 84197552 84197574 GATACAGAGAAGATTAGCATGGC 59 84197594 84197613 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 1 1 1 64 3 154986185 154988857 GATTCAAAGGAAGATGATTCGG 58 154988882 154988900 TCAGATGGTCCTTTGCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 3 1 1 66 3 154986185 154988857 GATTCAAAGGAAGATGATTCGG 58 154988884 154988902 ACTCAGATGGTCCTTTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000051652 ENSRNOT00000090389 1 1 1 61 19 32814402 32814420 CTGAGGTGCGATTATTGCT 58 32814445 32814463 ATTGCAAGTTGTCATGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054471 ENSRNOT00000085417 1 1 1 60 19 28930886 28930904 GAGAAGATTAGCATGGCCC 58 28930928 28930946 ATATTGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056099 ENSRNOT00000091451 2 1 1 60 18 81588150 81588168 GAGTGCTTACTGCTTCCTG 58 81588108 81588127 TGGGCTAAAGAATGGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068668.1 ENSRNOG00000061298 ENSRNOT00000090539 1 1 1 60 9 114281296 114281314 CCATCTGACCAAGACTCTG 57 114281254 114281272 CCAATCTCTTGACGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043271.1 ENSRNOG00000057212 ENSRNOT00000090756 2 1 1 81 19 26944630 26945889 CATGAAGAACAGGCCACAC 59 26944567 26944585 CAGAATTGACATGACCGCC 59 Novel Rattus norvegicus 81 AABR07068360.1 ENSRNOG00000050471 ENSRNOT00000070987 2 1 1 83 9 101251575 101251593 TCTTCACATCATTGTGGCA 57 101251638 101251660 CTGATCTGTTTGGTCTTTCCA 58 Novel Rattus norvegicus 81 AABR07034573.3 ENSRNOG00000059468 ENSRNOT00000073785 3 1 1 82 11 78980277 78980497 GGGACCACAGAAATAGCAG 58 78980213 78980231 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053209 ENSRNOT00000077300 3 1 1 60 20 56179338 56179358 TAAAGATCCTTATGGCTCGTG 58 56179298 56179316 TCACACTCATTCTTGCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026797.1 ENSRNOG00000018554 ENSRNOT00000025031 2 1 1 60 17 1909721 1909740 TTGCTTTCGTCGAATTTGAG 57 1909680 1909698 CCATCTAGCTCTCGGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn2 ENSRNOG00000059593 ENSRNOT00000078929 2 1 1 80 X 152928837 152928858 TCGTTCAAGAATCTTAAGCGTG 60 152928419 152928799 TTCATCAATCATTTCCTGGAGC 59 Novel Rattus norvegicus 81 AABR07065115.1 ENSRNOG00000048218 ENSRNOT00000075152 1 1 1 60 6 110511739 110511758 GAAATGCCTCCATGAGATCC 59 110511775 110511799 CTCTCACCCTTGATTACTAATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 3 1 1 101 1 222525745 222525763 CTCAGACCAAGGGCTTCTC 60 222525660 222525679 CCCACCCTTATCTTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 snoU109 ENSRNOG00000053482 ENSRNOT00000078365 2 1 1 60 7 119122781 119122801 TGTATCCAGAACATGCAACAC 59 119122822 119122841 CTCTACTATAAGGCTGGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107096.1 ENSRNOG00000055642 ENSRNOT00000086087 2 1 1 60 7 117326392 117326410 CCTCTCAATCTGATGCCGA 59 117325585 117325604 AAGAGATCAGGTGCAAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA43 ENSRNOG00000052975 ENSRNOT00000087166 2 1 1 60 7 92034041 92034059 TACATGTGCATCAGTTGGT 57 92034081 92034101 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042385.1 ENSRNOG00000047872 ENSRNOT00000070905 1 1 1 77 X 154585152 154585171 TCCCTGAAAGAATTCCAGGA 58 154585211 154585231 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058080 ENSRNOT00000085998 2 1 1 60 7 2221909 2221927 CATGCGTCCATGAAGAACG 60 2221867 2221886 TAAGGTGTCCTGCAATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000057766 ENSRNOT00000084504 3 1 1 61 7 140922102 140922120 GTAATGGCTGCAAACAGCA 60 140922059 140922078 GTAACCCACATAGGTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059813 ENSRNOT00000085313 1 1 1 60 4 53658736 53658757 GATACTGTGAGCAGAGAAATGG 59 53658697 53658717 ACATCTCACATGCAATAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000055237 ENSRNOT00000091857 1 1 1 63 7 114579377 114579395 CAGTTCTTTCCTGTTGGGT 58 114579422 114579440 CCAACGATGCCAGATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dgke ENSRNOG00000002338 ENSRNOT00000076587 3 1 1 80 10 76399417 76399437 CGTAGTGGAACTAACATGGGA 60 76398160 76399375 AGTGACATCGAACACCTGG 60 Novel Rattus norvegicus 81 AABR07063893.1 ENSRNOG00000058209 ENSRNOT00000091972 1 1 1 80 6 54443255 54443277 AGATTTCACCTCACATGCG 58 54443320 54443339 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061201 ENSRNOT00000080461 1 1 1 66 6 75622883 75622901 TTATCCATTGCACTCCGGA 59 75622835 75622853 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059892 ENSRNOT00000083000 2 1 1 60 9 76926363 76926381 GTGTGACTACTGTGTCACG 58 76926321 76926341 GAGCATAGACATAGCCTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055944 ENSRNOT00000077615 2 1 1 60 9 45559734 45559752 CAGGAAGATTAGCATGGCC 58 45559692 45559710 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.2 ENSRNOG00000052977 ENSRNOT00000078166 1 1 1 80 17 14552034 14553254 ATTACAAGGACGTTCAGGAC 58 14551973 14551992 TCCAAGCAACTAAGGATGTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060985 ENSRNOT00000087853 2 1 1 69 17 12202143 12202161 AGAGGCATTGCTGGTATGG 60 12202092 12202110 AGACTCAGCCTCTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054738 ENSRNOT00000079597 3 1 1 60 4 176450591 176450609 GAAGGTCATGGGTAAAGGG 58 176450549 176450570 CATGTTTGGAGGTTCTAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061079 ENSRNOT00000091924 2 1 1 61 7 93146531 93146550 CAGTAGGTGGCAGAGAAGAG 60 93146489 93146510 CTAATCCTTCAGGTCTGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056812 ENSRNOT00000091526 1 1 1 64 11 10610102 10610120 TTACCCATTGCACTGTGGA 59 10610056 10610074 ATCAAGATTCCTTCCGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060930 ENSRNOT00000084811 3 1 1 61 11 67350565 67350585 GGAATGCTACAGAGGTTACCA 60 67350605 67350626 GACTGTTTCGTGTATGTTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065844.1 ENSRNOG00000056665 ENSRNOT00000081569 2 1 1 83 6 143230011 143230031 CTGCAAGACTTCTGGTTTCAC 60 143229013 143229967 CACTCAACGCTCAATGTCTG 60 Novel Rattus norvegicus 81 AABR07065844.1 ENSRNOG00000056665 ENSRNOT00000081569 3 1 1 83 6 143230011 143230030 TGCAAGACTTCTGGTTTCAC 59 143229012 143229965 CCACTCAACGCTCAATGTC 59 Novel Rattus norvegicus 81 AABR07065886.1 ENSRNOG00000004262 ENSRNOT00000005634 2 1 1 60 6 143661402 143661423 CGTTGATTACTCACAGTTTCAG 58 143661439 143661462 TGAATCTCTTCCATAATCTCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000056151 ENSRNOT00000080165 1 1 1 80 2 21606002 21609454 CAAGAAGATCAAGAAGGTTCAGAG 60 21605945 21605964 ATGTAGTCCTGAACGATGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051814 ENSRNOT00000078607 1 1 1 60 4 84025545 84025564 TCACATGTACAGCAGTAGGG 59 84025504 84025523 TCAGAACACTCAACACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056080 ENSRNOT00000088036 3 1 1 60 9 91561551 91561571 ATGTATGTCACAGTAAGTGGC 58 91561590 91561611 GCTCATAGGTCAGAACATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061693 ENSRNOT00000085608 1 1 1 60 17 79115908 79115927 CCGTTCAGAGATTATCGTGG 58 79115867 79115888 TTGATCGCTTCACGTATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000053698 ENSRNOT00000089372 2 1 1 60 4 67208510 67208528 CTGGATTCTGGTCATTGGT 57 67208468 67208487 TTCCAAATACAGGGAAAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000057582 ENSRNOT00000080911 1 1 1 69 9 18106476 18106497 GAACATTGAAATTGGCTGAGAG 58 18106522 18106545 GGCTAGAAGTATACACGAATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000057582 ENSRNOT00000080911 2 1 1 70 9 18106475 18106495 GGAACATTGAAATTGGCTGAG 58 18106522 18106545 GGCTAGAAGTATACACGAATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058014 ENSRNOT00000089239 3 1 1 61 4 158424237 158424257 CAGTACACGTTCTCAAATTGG 58 158424280 158424298 CATCTTAGCACAATGGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061083 ENSRNOT00000077425 1 1 1 60 10 89558408 89558427 GAGTTGGAATAGGAGCTTGC 59 89558450 89558468 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094217.1 ENSRNOG00000039788 ENSRNOT00000038102 2 1 1 107 1 31436824 31436843 AAGATATGGCAAAGGCTGAC 58 31436994 31437012 ACATCGATGGATAAGCCGG 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053322 ENSRNOT00000080718 1 1 1 60 9 13654576 13654595 CTGCAATTTCTGTAAACGCC 58 13654535 13654553 AAACAGCTTTCCACTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033579.1 ENSRNOG00000058863 ENSRNOT00000081347 1 1 1 81 11 28810788 28810806 CAACGTGAAGTCACTGGAG 59 28810549 28810745 CTTCAACCTCCACTCTTTCAG 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076566 3 1 3 71 20 44606484 44606502 ACCCTACTGCTGTTAGTGC 59 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044574 ENSRNOT00000069841 2 1 1 63 4 11017890 11017908 CGATCTCGTCTGATCTCGG 60 11017845 11017863 CATAGGCATTGTGTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061666 ENSRNOT00000083832 2 1 1 60 9 41373996 41374017 AGTACCATGATCATGATCATGG 58 41374038 41374056 ACATCCGGAGTACAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058124.2 ENSRNOG00000053535 ENSRNOT00000080206 3 1 1 60 7 101146941 101146962 CTCATGAAAGATGCATTTCACC 58 101146981 101147001 GAGCTGTAATTTAAGCCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 3 1 1 70 2 26870165 26870183 AAATGTCTGTACAGCCAGC 58 26870017 26870132 ATAGGCCCTTAAGACCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC118963.1 ENSRNOG00000049922 ENSRNOT00000072337 1 1 1 103 5 151750104 151750124 TGAAATGAAGGTGATGCTCTC 58 151750021 151750039 AAACGAATGATGAGCGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118963.1 ENSRNOG00000049922 ENSRNOT00000072337 3 1 1 104 5 151750104 151750125 CTGAAATGAAGGTGATGCTCTC 60 151750021 151750039 AAACGAATGATGAGCGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672,ENSRNOT00000079157 2 2 2 81 16 33375066 33375086 CTCCTCATGGTACTTTCTCCA 59 33375124 33375149 CATGGGATTATCTTTCTGTACCTG 59 Novel Rattus norvegicus 81 Rn60_10_0879.5 ENSRNOG00000051343 ENSRNOT00000076523 1 1 1 86 10 88079778 88084534 ACAAGGTGATGTAGGTCCC 59 88084584 88084602 GAAAGACTGCTCAGTCCAC 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000053138 ENSRNOT00000086632 1 1 1 60 9 77733416 77733436 GTGTTCTTACATCAGTCAGGG 59 77733376 77733400 CATCAATCTAGGATGAACAAAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 1 2 2 80 20 4539757 4539776 AGAGTGTCTGAGGAGAGGAG 60 4539326 4539717 CAGCTTGTGGTCTTCATAACTG 60 Novel Rattus norvegicus 81 AABR07026004.1 ENSRNOG00000058010 ENSRNOT00000091231 1 1 1 81 16 58852301 58852319 TCCCATATGCACCAGTGTG 60 58852361 58852419 ACTGTAGCTGTTCTCTGATCTG 60 Novel Rattus norvegicus 81 Rn60_20_0051.7 ENSRNOG00000053095 ENSRNOT00000079690 2 1 1 94 20 5049629 5049648 GCTCCCATCTTCATCAACTC 59 5049705 5050562 TTACTTCACTTGTCAGCGG 58 Novel InUTR Rattus norvegicus 81 AC108635.1 ENSRNOG00000046778 ENSRNOT00000075337 3 1 1 90 7 6547792 6547812 TGATAGTTGGTGCTGTGAC 58 6547865 6547884 GAGGGAAATCTCAGAATGGT 57 Novel Rattus norvegicus 81 AABR07054247.1 ENSRNOG00000053547 ENSRNOT00000090559 3 1 1 79 3 145392900 145392918 TAGTTCTCGGAAAGCTCCC 59 145392964 145392983 TATGGTATCCAACAGCTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC119007.1 ENSRNOG00000036872 ENSRNOT00000055353 3 1 1 81 7 142941262 142941280 CTGTGGGATCCTGTTCCTG 60 142941325 142941343 TGAATGCCTTTCTCGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000038427 ENSRNOT00000068104 3 1 1 81 14 78376283 78376304 CAGAAGATTCCATGGTGTTCTG 59 78371995 78376241 TGTGCCTGAGTCTATCCTG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000058037 ENSRNOT00000077605 1 1 1 60 3 4224921 4224940 TTACTCAGATGAGCTGACCC 59 4224880 4224898 ATGCAGTTGAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013200.1 ENSRNOG00000030491 ENSRNOT00000042173 1 1 1 60 2 226826201 226826219 TTGTCCCTCTGGAAAGCTG 60 226826243 226826261 TGCAGGGATGATGTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058684 ENSRNOT00000085449 1 1 1 60 3 32761940 32761958 GGTTGTAGTGAGCTATGCC 58 32761981 32762000 AGGTCACCATATTGATGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002384.2 ENSRNOG00000046037 ENSRNOT00000073243 1 1 1 80 1 72360917 72360939 TGACAGAAACCTTCAGAAAGTC 59 72360858 72360879 GGATTTGGGAGTTGTAGTATGG 59 Novel Rattus norvegicus 81 AABR07030729.1 ENSRNOG00000030224 ENSRNOT00000044922 2 1 1 60 10 102289799 102289817 CGGATTTGGCCATATTGGG 59 102289757 102289775 CTCCACTTTGCCAGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030254.1 ENSRNOG00000052096 ENSRNOT00000079364 1 1 1 95 10 78112876 78173853 TGTTAGGCCTAGAGTGCTG 59 78173912 78173930 GCCAGCAGGTGTAATTCTG 59 Novel InUTR Rattus norvegicus 81 U6atac ENSRNOG00000055883 ENSRNOT00000089208 2 1 1 60 8 49201868 49201888 AAGAAAGAAGTTAGCCTTCCC 58 49201907 49201928 ATGTGTTAGTAAACTCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054262.2 ENSRNOG00000056526 ENSRNOT00000087754 3 1 1 79 3 145648645 145648664 AATATCTTCAGTGCTGGGCA 60 145648708 145648726 ACCACAGAACCAACAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052082 ENSRNOT00000081792 3 1 1 60 8 95064697 95064716 CACCTGTTATCAGTAGGTGG 57 95064656 95064677 GTTCAGAACACTGAGAGTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048483 ENSRNOT00000074952 3 1 1 60 1 262963642 262963660 TGAACATGCCAGATCTCAG 57 262963600 262963621 TCTCCTATCCAAGTTCTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141517.1 ENSRNOG00000057297 ENSRNOT00000086156 3 1 1 80 1 72966511 72966534 AGATTTCACCTCACATGCGA 60 72966450 72966470 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054754 ENSRNOT00000080293 2 1 1 60 8 126890707 126890725 CGATGAAGAATGCAGCCAG 59 126890748 126890767 TCCATGATCAATGTGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000058283 ENSRNOT00000080998 1 1 1 60 8 128807095 128807115 CTGCACACTATTAAAGCTCAG 57 128807137 128807155 CCGACACTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026300.1 ENSRNOG00000050771 ENSRNOT00000073351 3 1 1 99 16 71075401 71075419 CTTCTTGTCACAACAGGCA 58 71075319 71075340 GAAATAATTCGGAATGCACGG 58 Novel Rattus norvegicus 81 AABR07049286.1 ENSRNOG00000061114 ENSRNOT00000075137 2 1 1 80 5 113814361 113814384 GAGATTTCACCTCACATGCG 59 113814300 113814319 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053318 ENSRNOT00000083640 3 1 1 60 3 58648348 58648367 AAGGCTGTGTCTATGCTCAG 60 58648307 58648328 TCAGGGAATACCAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058974 ENSRNOT00000083339 3 1 1 60 3 106780778 106780797 TGTGACAGGAAAGAGACAGG 59 106780818 106780838 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060569 ENSRNOT00000077267 3 1 1 60 3 72885519 72885537 ACTCAAATCTTTCCCAGGC 58 72885477 72885495 TACTATTGCACTGCCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057435 ENSRNOT00000089019 3 1 1 60 3 141985106 141985128 CGATACAGAGAAGATTAGCATGG 59 141985068 141985087 GAATGCTTCCGGAATTTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC116236.1 ENSRNOG00000059082 ENSRNOT00000088388 3 1 1 97 14 34324319 34324338 TATTTGATCCTCACAGTGGC 58 34324396 34328825 GAATTGATTCTTTGTGGAGCC 58 Novel Rattus norvegicus 81 AABR07046725.1 ENSRNOG00000053388 ENSRNOT00000085297 1 1 1 90 5 3628129 3628147 GATGGGAACTCTACCACCC 59 3627605 3627624 GGATGGAGTTGGAAGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07046725.1 ENSRNOG00000053388 ENSRNOT00000085297 2 1 1 91 5 3628130 3628148 TGATGGGAACTCTACCACC 58 3627605 3627624 GGATGGAGTTGGAAGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031272.1 ENSRNOG00000051767 ENSRNOT00000078083 1 1 1 91 18 6828616 6829558 ATGGATGAACATTCGACTTCTG 59 6828546 6828564 TCCAAACCAAGGTCCTCTG 59 Novel Rattus norvegicus 81 AABR07046732.1 ENSRNOG00000058240 ENSRNOT00000079313 3 1 1 94 5 3951132 3951151 TAAGTGAACTGGTAGCTGGG 59 3945648 3951077 GATGTTCCTGCAAGATCTCAC 59 Novel Rattus norvegicus 81 AABR07014885.1 ENSRNOG00000053058 ENSRNOT00000081289 2 1 1 94 14 35802378 35803075 ACGATGGCACTGATTTGAG 58 35802302 35802322 CTTATTAACTCTTTGCTGCCC 57 Novel Rattus norvegicus 81 AABR07046745.1 ENSRNOG00000052848 ENSRNOT00000083482 1 1 1 80 5 4548341 4549231 GTCATTGGATGTAAGCTGAAGG 60 4548282 4548302 CAGACAGTCGTTGATTGTAGG 59 Novel Rattus norvegicus 81 AABR07014897.3 ENSRNOG00000058471 ENSRNOT00000090509 2 1 1 80 14 36988484 36995006 ACTAGATTCTGTACAGCTGTCG 60 36995045 36995065 TTCTTTCCTGAGACCGATGAC 60 Novel Rattus norvegicus 81 AABR07062756.1 ENSRNOG00000054819 ENSRNOT00000086518 1 1 1 120 6 6386506 6390990 ACTCTCCTCAGAGGACCAG 60 6391074 6391092 CTCGGTGTGGATTGGAGAG 60 Novel Rattus norvegicus 81 AABR07031399.1 ENSRNOG00000060341 ENSRNOT00000083236 1 1 1 127 18 12283735 12283753 AAGGATGTGAAGTGGAGCC 60 12227023 12227041 AGCAGGTAGTCATTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 2 1 1 69 14 44872775 44876789 CATCACCTCCCATAATCGC 58 44872724 44872745 GTGGGATATAATTTACTCCGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031489.1 ENSRNOG00000052389 ENSRNOT00000079756 2 1 1 80 18 15558142 15558161 CTACTTGCCAGAAGGAAGTC 58 15555586 15558100 CAGCCAAAGACCTGATACTG 58 Novel Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000081555 1 1 2 100 4 86699586 86737136 CTTCTCCCGATCTAAGTCAC 57 86699505 86699523 TGTCCTGGACAATTGTTGG 58 Novel Rattus norvegicus 81 AABR07015517.3 ENSRNOG00000061322 ENSRNOT00000091758 2 1 1 80 14 61101631 61111917 GACATTTGAGGTGGTTGGT 58 61111958 61111979 AATCTCTTCTTTCACCCAAAGG 59 Novel Rattus norvegicus 81 AABR07060726.1 ENSRNOG00000054748 ENSRNOT00000080723 3 1 1 80 4 91179221 91179863 GACTTCAGGATGCCTTGAG 58 91179159 91179177 TTTGAAGGAAACAGTGGCT 58 Novel Rattus norvegicus 81 AABR07029878.1 ENSRNOG00000057566 ENSRNOT00000089955 2 1 1 83 10 57159321 57159340 ATAAAGGACTGTTCGGTCAC 58 57152840 57152858 TGGACTAGGATCTGGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015647.1 ENSRNOG00000059908 ENSRNOT00000091793 3 1 1 184 14 68607717 68607740 CCTCAATGATAATGGGCTTTAGTG 60 68600353 68600373 AGCCATACAGACAGGTTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029901.1 ENSRNOG00000053970 ENSRNOT00000087110 3 1 1 86 10 58515407 58518425 TACCACAGTATCACTAAAGGTC 57 58515342 58515360 GATAACCAGCCAAGAGCTC 58 Novel Rattus norvegicus 81 AC115202.1 ENSRNOG00000055191 ENSRNOT00000087525 2 1 1 83 4 109419260 109419279 GCCAAGAGTTGATTCAACAG 57 109419325 109461814 TTGTCGTAGCTGTCATGTG 58 Novel Rattus norvegicus 81 AABR07047823.1 ENSRNOG00000058407 ENSRNOT00000080092 3 1 1 80 5 49387707 49387727 AAGTTACTCGAGAAGTTGACC 58 49387769 49389519 GTATGTGCCATACCTGGTG 58 Novel Rattus norvegicus 81 AABR07015800.2 ENSRNOG00000054686 ENSRNOT00000088703 3 1 1 82 14 77663702 77663720 CAGACACATCGGAGGAGAG 59 77660710 77660728 ACTCCAAGGAAGTTTCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061249.1 ENSRNOG00000053528 ENSRNOT00000088362 1 1 1 89 4 111871496 111871514 TGGTGGTATGATCTGACCT 57 111842510 111842531 TCTTGTATGAAGCTAAGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000087564 2 1 2 80 4 117655197 117661815 TTCTGAAAGACCTGAATCCAG 58 117655137 117655156 AAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07015966.1 ENSRNOG00000055092 ENSRNOT00000086499 1 1 1 80 14 88184245 88184269 CTGTTCTAATTCCACACTTACTCTG 60 88184306 88185538 TTTCTGAGATCCCTTCTGCC 60 Novel Rattus norvegicus 81 AABR07030498.1 ENSRNOG00000059149 ENSRNOT00000086815 2 1 1 84 10 90701363 90709251 CTTAGTGACAACAGCTTGGA 58 90701298 90701316 CTCTCCTCACGATCCTCTC 58 Novel Rattus norvegicus 81 AABR07030563.1 ENSRNOG00000057017 ENSRNOT00000080531 1 1 1 102 10 93137697 93137716 AACACCAAATTCTTCCAGGA 57 93137863 93137881 AGATGGACAGATAGGACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016556.3 ENSRNOG00000058894 ENSRNOT00000083639 1 1 1 60 14 103457601 103457621 CAACGTCCCAATGTTCATCTC 60 103457308 103457328 GTGTTCTTTGTCTGACAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048898.1 ENSRNOG00000056560 ENSRNOT00000091679 3 1 1 80 5 96242834 96243867 ACAGATTGCAGACAACTGG 58 96242772 96242790 TACTTCGTGGTCTCTTGGG 59 Novel Rattus norvegicus 81 AABR07016589.1 ENSRNOG00000052148 ENSRNOT00000083675 1 1 1 81 14 105480743 105480764 ACAGAACTTAAAGGTGTTTGGG 59 105480803 105484644 GGCAAATTCAAGAACCTTATGC 59 Novel Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 1 1 1 64 10 93238171 93238191 GTCTTTGCAGATGAAATGGTC 58 93238217 93239917 TTTCCTGTGAGCAACTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.1 ENSRNOG00000051841 ENSRNOT00000082370 3 1 1 82 10 93242354 93242372 AGCTCCTTGTCAAATGCAG 59 93251184 93251204 CCTACGGTTTCCAGATATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC133055.1 ENSRNOG00000056790 ENSRNOT00000083042 3 1 1 106 10 94485400 94485418 CCTGTGAGAATCCTGTGGG 60 94483766 94485334 GTTCTGAATCTGAATCCAGTGTG 60 Novel Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 3 1 1 60 15 1152907 1161390 TGGATATCTGTAGAGATGTGGA 58 1152868 1152887 GAACTTCTAGGTTGCTGGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016934.1 ENSRNOG00000058309 ENSRNOT00000081520 1 1 1 80 15 5142797 5142817 GAAGACAGTAGATGGCCTAGG 60 5141629 5142756 AATGACTCCAGGAACTTGGG 60 Novel Rattus norvegicus 81 AABR07049282.1 ENSRNOG00000061020 ENSRNOT00000091898 3 1 1 80 5 113202758 113202777 AAGAGGGTGACTGTCATCTG 59 113190825 113202718 CGATAACAACACTAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07017048.1 ENSRNOG00000053848 ENSRNOT00000081917 1 1 1 93 15 8062151 8067327 CAACGGTAGTGAACGTCAC 59 8067384 8067402 TCCTCTGAGCTCTCCTGAG 60 Novel Rattus norvegicus 81 AABR07017048.1 ENSRNOG00000053848 ENSRNOT00000081917 3 1 1 96 15 8062148 8067324 AACCAACGGTAGTGAACGT 60 8067384 8067402 TCCTCTGAGCTCTCCTGAG 60 Novel Rattus norvegicus 81 AABR07017189.1 ENSRNOG00000058519 ENSRNOT00000089717 2 1 1 83 15 16637950 16638842 AGTCTACAGTGATGCTTTCCT 59 16637887 16637907 GGTGAACATCATCTTCCTCTG 59 Novel Rattus norvegicus 81 AABR07017198.1 ENSRNOG00000056086 ENSRNOT00000091492 2 1 1 80 15 17264550 17264570 TCATTTCGCCTGATTTCTGAG 59 17264611 17265776 TGTCTGATTCACCTGAACCC 60 Novel Rattus norvegicus 81 AABR07017237.2 ENSRNOG00000058267 ENSRNOT00000090141 1 1 1 80 15 19042264 19042681 GGACCTTGGTCTTCAATTCTC 59 19042721 19042741 GTGGACAGTTCTATCACAGAG 58 Novel Rattus norvegicus 81 AABR07062329.1 ENSRNOG00000051629 ENSRNOT00000087030 3 1 1 71 4 169280814 169280832 TTCTCAACCTGACCTTCCC 59 169287029 169287047 ATGATCACTGCTCTGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 3 1 1 75 11 7581427 7582417 GAAGAGTCTACAAAGGCTGAG 58 7582452 7582472 TCCATGGTTATTTGTGCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001358.1 ENSRNOG00000053056 ENSRNOT00000081556 3 1 1 98 1 40255592 40255616 GCTCTGATCCATTTAGATATGTCTC 59 40232413 40255538 ACAGCTTCTTGATGAGTTACG 59 Novel Rattus norvegicus 81 AABR07031533.3 ENSRNOG00000058311 ENSRNOT00000091764 2 1 1 85 18 18098809 18104857 TCATTTGGGATGTGGGACC 60 18104906 18104924 CAAGAAGACGGGTCTCCTC 60 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776,ENSRNOT00000082851 3 2 2 93 5 132700540 132700559 CCAAGTTCCAATGTGAATCC 57 132706091 132708826 CATTTATGCCTGGATTCGC 57 Novel Rattus norvegicus 81 AABR07017626.1 ENSRNOG00000058996 ENSRNOT00000084265 3 1 1 91 15 29388010 29388251 TTTGTCTGGATGTATTGTGGC 59 29387939 29387957 ATGAACAGTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07062513.2 ENSRNOG00000052942 ENSRNOT00000086702 3 1 1 81 4 180820125 180828623 CACAGAAGTTCTCTGTCATGTC 59 180820065 180820083 TTCAGGATCTGATGGCTCC 59 Novel Rattus norvegicus 81 AABR07049695.4 ENSRNOG00000057688 ENSRNOT00000077204 3 1 1 91 5 133799382 133801958 GGAAGCACAGTACTGAGGA 59 133802011 133802031 GGTATTCATCTGGAACTGCAG 59 Novel Rattus norvegicus 81 AABR07049783.2 ENSRNOG00000057360 ENSRNOT00000089945 1 1 1 91 5 137659949 137659967 AAACCTCGTCTACTGGCTG 59 137658189 137659896 TGATGCTAACCTGGTAGATGG 59 Novel Rattus norvegicus 81 AABR07062885.1 ENSRNOG00000053520 ENSRNOT00000077939 1 1 1 107 6 12717234 12718124 AAATAACAAGCTGTGGCCC 59 12718194 12718213 TTAGACACGCTAGTCAATGC 58 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000087580 2 1 2 60 5 143194236 143194257 AGAAGCTAGTTGCTAGGAAGTC 60 143194661 143194680 AAAGTGTTCTTCAGCAACCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001610.1 ENSRNOG00000055136 ENSRNOT00000082026 3 1 1 80 1 54224086 54287679 TCAGCATCAAATACCTGAGG 57 54224025 54224045 ATACGTGCAGGTGATTTAGAC 58 Novel Rattus norvegicus 81 AABR07031931.1 ENSRNOG00000058859 ENSRNOT00000084025 3 1 1 82 18 39757017 39757039 AAGCAGAGTGTAGAGGATAAAGG 60 39754671 39756977 AGTGGCAGAAGTAATTCACCT 60 Novel Rattus norvegicus 81 AABR07049961.1 ENSRNOG00000052753 ENSRNOT00000082281 1 1 1 80 5 146319730 146320629 TTCATCTAAGCCTCAGGTGAG 59 146320669 146320689 CTATCATTTGTCTTCAGCCGC 60 Novel Rattus norvegicus 81 AABR07063509.1 ENSRNOG00000052377 ENSRNOT00000085423 2 1 1 89 6 32440842 32460202 ATTCTCCAGAGCTGGAGAG 58 32440771 32440789 TTACCTTCGAGCATCTGTG 57 Novel Rattus norvegicus 81 AABR07001700.2 ENSRNOG00000059261 ENSRNOT00000082731 2 1 1 83 1 55376026 55377018 TGGCTAAGGAATGGCTCTG 60 55375961 55375981 TTTAAGTGAAAGTTGGCCGTC 60 Novel Rattus norvegicus 81 AABR07032171.1 ENSRNOG00000052184 ENSRNOT00000083820 3 1 1 83 18 50773148 50785829 ACATTTCAAGAACAGCCCTG 59 50785875 50785893 GTTGGCTCCATCAACAAGG 59 Novel Rattus norvegicus 81 AC133821.1 ENSRNOG00000055279 ENSRNOT00000084603 2 1 1 80 5 154372336 154372355 CTGAATCGAATCTGCTGAGG 59 154363546 154372294 TTCTGTAATCCACTGCTGCT 60 Novel Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 3 2 2 81 15 46495172 46495190 CATCTTGGGAAAGGCAACG 60 46495231 46502322 GTCATCTTCTTTGAATCTCCTGG 59 Novel Rattus norvegicus 81 AC105604.1 ENSRNOG00000061285 ENSRNOT00000086938 2 1 1 90 18 52593720 52593739 ATATTGGAAGTCGATGGCTG 58 52593792 52600082 GTCTCCATTGCATAAGCGA 58 Novel Rattus norvegicus 81 AC098462.3 ENSRNOG00000058214 ENSRNOT00000088236 3 1 1 80 1 63301739 63315763 TAGTATCACAGCGTCTGGTG 59 63301678 63301699 AAGCACCAATAGCTGTAATCTG 59 Novel Rattus norvegicus 81 AABR07002066.1 ENSRNOG00000051968 ENSRNOT00000079821 3 1 1 120 1 65652821 65652839 TTGCTATGACAACCCGGAG 60 65651461 65652740 GGCAGTTCTCACATCTTTAGAG 59 Novel Rattus norvegicus 81 AABR07018342.1 ENSRNOG00000060189 ENSRNOT00000086746 3 1 1 70 15 53092981 53092999 TATGCAATGTGTAGGGCTG 58 53095993 53096011 CAGATAGCCATGGCTACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC107274.1 ENSRNOG00000058091 ENSRNOT00000088210 1 1 1 81 18 57885906 57896886 CTGTTTCGCCAACATAGCT 59 57885843 57885866 GAATAATCAGGAAGTGGACTTCAG 59 Novel Rattus norvegicus 81 AABR07018373.1 ENSRNOG00000061561 ENSRNOT00000086565 2 1 1 86 15 54700550 54700568 AGACCACAATGTCAAGACC 57 54701987 54702007 AATCCCATACGAAGTACAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 2 2 2 81 1 71223096 71223117 GATATCCATCCTAGAGCAAGGT 59 71207962 71223054 AGACTCCAATGCTGAACCC 60 Novel Rattus norvegicus 81 AABR07018456.1 ENSRNOG00000058117 ENSRNOT00000086799 2 1 1 80 15 58667353 58668937 GTTCACAGTGAAGGCTCAC 59 58667291 58667311 AGTTGTCAGTTTGAAGGTCAC 59 Novel Rattus norvegicus 81 AABR07018459.1 ENSRNOG00000057847 ENSRNOT00000086871 3 1 1 82 15 58834577 58834596 GCCAAGACTGTGGTATTCAG 59 58834639 58834847 TTCTCCGTCATTCTTCTCCTG 60 Novel Rattus norvegicus 81 AABR07050498.1 ENSRNOG00000056723 ENSRNOT00000091304 3 1 1 81 5 167269000 167270358 GCATTCTGGGTAGTGACGT 60 167268937 167268956 CACATGTTTGCCAAATGCTG 59 Novel Rattus norvegicus 81 AABR07032417.1 ENSRNOG00000061266 ENSRNOT00000083596 1 1 1 80 18 64654740 64658478 AATCTTCAAGCTGCAGAGGA 60 64658518 64658539 GCCTCCTTGTTATTGATCACAG 60 Novel Rattus norvegicus 81 AABR07018807.1 ENSRNOG00000060601 ENSRNOT00000079749 1 1 1 108 15 73988496 73988516 GAGGAAGCATACATTCTTGGG 59 73988580 74047583 GAAGAAATTCTAGAACCCATAAGGG 59 Novel Rattus norvegicus 81 AC134759.1 ENSRNOG00000057198 ENSRNOT00000088115 1 1 1 74 1 82371651 82371669 TTCAGCTGACCTGTTCTCC 59 82372846 82372864 TTGTCGTCTTCTTTCTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051248.1 ENSRNOG00000056977 ENSRNOT00000077813 2 1 1 80 3 3243890 3244602 ACTTTGATGCACATAAGGTGG 59 3244644 3244662 CAGTGGGCAAGACTAGGTC 60 Novel Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613,ENSRNOT00000088122 1 2 2 80 15 87456858 87456876 GCTCTGTGAGGTTTGACTG 59 87454228 87456816 CATTCTCCATGAGAACCACTG 59 Novel Rattus norvegicus 81 AABR07051321.1 ENSRNOG00000061920 ENSRNOT00000087635 2 1 1 80 3 4894665 4895535 GAGATCCAGGTGTACAGACG 60 4895576 4895596 CCGTTGGAAGTAGGTAAAGGT 60 Novel Rattus norvegicus 81 AABR07019137.1 ENSRNOG00000052807 ENSRNOT00000084183 2 1 1 81 15 90675920 90687064 TCCTTCGACAAAGTCCTGG 59 90687108 90687127 AATGGCTCCTTCCTTACTCG 60 Novel Rattus norvegicus 81 AABR07019140.1 ENSRNOG00000057742 ENSRNOT00000089362 1 1 1 80 15 90809244 90842234 GATGAAAGATTTGCCAACTCC 58 90842276 90842294 CTTCAAGCTCGCTATCCTC 58 Novel Rattus norvegicus 81 AABR07019140.1 ENSRNOG00000057742 ENSRNOT00000089362 3 1 1 81 15 90809243 90842233 GGATGAAAGATTTGCCAACTC 58 90842276 90842294 CTTCAAGCTCGCTATCCTC 58 Novel Rattus norvegicus 81 AABR07019155.1 ENSRNOG00000058799 ENSRNOT00000091404 3 1 1 83 15 91490844 91511356 AATGTATTGCCGAGAAAGGA 57 91511400 91511420 ACGTATTAAGAGCACTTCTCC 58 Novel Rattus norvegicus 81 AABR07019162.1 ENSRNOG00000059860 ENSRNOT00000084495 1 1 1 94 15 91810960 91810978 AAATCCCAGAGACAAGCAC 58 91811034 91818932 GTTCTGATAACTTCCTGTGGT 58 Novel Rattus norvegicus 81 AABR07019254.1 ENSRNOG00000052453 ENSRNOT00000089312 2 1 1 106 15 96779981 96789138 GGTTTATGAAAGCAATCGCT 57 96779894 96779912 AGTCAAGTTCAGTGTTGGG 58 Novel Rattus norvegicus 81 AABR07032748.1 ENSRNOG00000057271 ENSRNOT00000078729 1 1 1 80 18 79062983 79063096 CCTCACAAGACAGAATGTGG 59 79063139 79063157 TTTGAAGCATGTGGAGCAG 59 Novel Rattus norvegicus 81 AABR07019340.1 ENSRNOG00000053548 ENSRNOT00000086234 2 1 1 80 15 100246792 100246812 TTTCTTCATCAATAAGGGCGC 59 100242956 100246753 TTCTTTCCCATCTTCTCTTGTG 58 Novel Rattus norvegicus 81 AABR07051485.1 ENSRNOG00000059802 ENSRNOT00000080186 1 1 1 80 3 13825545 13837677 AGTCTAGTTGCAGCATGAC 58 13825483 13825501 TTAGAAAGTTCGCCTCCTG 57 Novel Rattus norvegicus 81 AABR07019392.1 ENSRNOG00000051611 ENSRNOT00000087914 3 1 1 60 15 103673207 103673226 TTTCCTTGGAAGTCCCTCTG 59 103675011 103675032 CTAATTCTTCTTGGAGGCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019437.2 ENSRNOG00000052178 ENSRNOT00000091356 2 1 1 81 15 105406985 105407003 CATAGGTGGACACAACCAC 58 105407046 105407559 TCAGTCATTCATTAAGTCGGC 59 Novel Rattus norvegicus 81 AABR07064724.3 ENSRNOG00000057000 ENSRNOT00000077355 2 1 1 84 6 91688844 91688863 CATGTTGATGTACGACGACC 59 91684651 91688799 CGAAGTGTGAACCTTCATCTC 59 Novel Rattus norvegicus 81 AABR07033301.1 ENSRNOG00000061487 ENSRNOT00000078592 3 1 1 61 11 16670860 16670879 AGGATGGATACATGGATGGT 58 16669870 16669888 GGAAAGTGCTTCGAGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065042.1 ENSRNOG00000054814 ENSRNOT00000084962 1 1 1 80 6 105316308 105317327 AGGTTGGAGACAGTTTCAG 57 105317369 105317389 TAAAGACGTAAGGATCAGTGG 57 Novel Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 3 1 1 70 1 97084719 97089829 AAGGGATCACAAGACTGGG 59 97084667 97084685 TCAAGTTTCGAGCCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 2 1 1 62 1 97131262 97133592 ACAGTGTTGAAACGAGCTG 59 97133618 97133636 CTTCTGGAATCCACCAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000089993 2 1 3 60 11 27571785 27571803 GAAAGGGATGGTGTGAGAG 58 27574179 27574197 CTGGGAACCACCCTATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965,ENSRNOT00000089993 3 3 3 61 11 27574243 27574261 CAACTGAGCTACCCAAGAC 58 27575725 27575743 ATCGTACATCCCGATCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 3 1 1 67 13 41853431 41853449 GAGGAGGAAGAGGGAAGAG 58 41853478 41860701 ACCCTGAACATTAGTCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033697.2 ENSRNOG00000056122 ENSRNOT00000083241 3 1 1 118 11 35618885 35618903 TTTACTGCTGTGTCACCAC 58 35608236 35608254 CTACTGTGTCCACGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033850.1 ENSRNOG00000052206 ENSRNOT00000087214 3 1 1 61 11 40444368 40472567 GCTCACAGCCAGAAATTCTG 60 40472588 40472609 TTGCTTTCTGTGATATGCTGTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052387.1 ENSRNOG00000061109 ENSRNOT00000088407 1 1 1 80 3 50512938 50512956 AGGAATGCAAAGCACATCG 59 50507863 50512897 GTCTTCTACCTCTAAGTAGCCA 59 Novel Rattus norvegicus 81 AABR07065312.1 ENSRNOG00000057714 ENSRNOT00000088639 1 1 1 98 6 120649369 120649387 TCAGGCACTTCTCCATGTC 59 120636337 120649310 GTAGGTCACCTATATCCAAGGC 60 Novel Rattus norvegicus 81 AABR07065334.1 ENSRNOG00000052245 ENSRNOT00000084335 2 1 1 82 6 121591804 121591823 ACTAATGGCATTTGGACCTG 58 121586124 121591762 CTATTGTACCTTGTTCCCTCTG 58 Novel Rattus norvegicus 81 AABR07021430.1 ENSRNOG00000051975 ENSRNOT00000077264 1 1 1 80 13 71441230 71444334 CTGGCCAAAGACAAGAGGA 60 71441168 71441189 TCACAGTCTTAACTCACATCCC 60 Novel Rattus norvegicus 81 AABR07034073.1 ENSRNOG00000057150 ENSRNOT00000078314 3 1 1 82 11 51208818 51212231 TCTACACCAAGGAGTGTTCC 59 51212276 51212294 TGGCTGCTCTTTGTATGTG 58 Novel Rattus norvegicus 81 AABR07003699.1 ENSRNOG00000053358 ENSRNOT00000090501 1 1 1 93 1 117630899 117630917 ATGAAGACAAGCCCATCCC 60 117629626 117629646 CCTCCGTATTGTCTAGAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034100.1 ENSRNOG00000056538 ENSRNOT00000080184 2 1 1 61 11 52488799 52488820 GTACAATTACGGATCTTCTGGG 59 52470505 52488777 CTGGGAGAAAGAGCCTCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07052541.1 ENSRNOG00000056244 ENSRNOT00000084655 1 1 1 89 3 60681735 60683038 TTTGGCTGCCAGTATTTGC 59 60683089 60683109 TCCAGTAACTACGCTCAACTG 60 Novel Rattus norvegicus 81 AABR07052568.1 ENSRNOG00000051523 ENSRNOT00000091684 2 1 1 74 3 61967560 61967578 CTCACACTGAAGGCTTTGG 59 61967847 61967868 GCACTGATATGTCAAATGACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072876.1 ENSRNOG00000052074 ENSRNOT00000082826 1 1 1 80 3 62316436 62316454 AAATGCAACCATTGGTCCG 59 62292796 62316395 CTTCTGGAATTTGAGCTGTCTG 60 Novel Rattus norvegicus 81 AC133316.1 ENSRNOG00000051541 ENSRNOT00000084878 3 1 1 104 6 127258266 127259506 GGTACTTCAGGAAGGCCAG 60 127262131 127262153 GTGGTCTCTGCTTTCTTATTCTC 59 Novel Rattus norvegicus 81 AABR07052589.1 ENSRNOG00000054867 ENSRNOT00000081267 3 1 1 94 3 64853424 64853442 AGAAAGCACAACTCCTCCA 59 64853500 64856314 GAGTTGTTGGGCTTTCTGG 59 Novel Rattus norvegicus 81 AABR07065429.1 ENSRNOG00000055861 ENSRNOT00000088940 2 1 1 85 6 128344592 128345292 CCAAGTTGATGGTACTTGGC 59 128345339 128345358 CAGTACAAGGAGGAATGGGA 59 Novel Rattus norvegicus 81 AABR07052643.1 ENSRNOG00000056573 ENSRNOT00000089225 3 1 1 101 3 67676391 67676411 AGAACCGATTTCCAGACAGAG 60 67676473 67683435 GAGTCCATGAAACCAAAGCC 60 Novel Rattus norvegicus 81 AABR07021799.1 ENSRNOG00000061447 ENSRNOT00000084883 2 1 1 95 13 91527519 91528902 GCAATCAGAGTAACCACCAC 59 91527273 91527297 GAAGACTTCCAACTTCTATTTCTCC 60 Novel Rattus norvegicus 81 LOC103692343 ENSRNOG00000059585 ENSRNOT00000082828 3 1 1 81 13 95717630 95717652 CTCTGGAGACAATAGAAACATCC 59 95712037 95717589 ACGGATAGAATCGTCTGGG 59 Novel Rattus norvegicus 81 AABR07052923.1 ENSRNOG00000054354 ENSRNOT00000078869 3 1 1 93 3 84364906 84366907 CTGAGAATGGCTAGAGTATTACAC 59 84366955 84366977 GACACATACTTTCCAATTCTCCC 60 Novel Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 3 1 1 60 13 107491166 107491184 AGACAAGGAGGGAACAGAC 59 107491208 107501001 ACCAGCATACACTCGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065818.1 ENSRNOG00000055835 ENSRNOT00000071313 1 1 1 60 6 142757313 142757335 GAGCTTTGTCTTTCTCTTCTTCC 60 142757196 142757214 CAGTTGAACTTCGGAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066060.1 ENSRNOG00000055763 ENSRNOT00000086927 3 1 1 90 9 1090436 1115784 TTTAGAAGTTCCTGCCGAG 57 1115837 1115856 AATCTTCTGCTGTTCAATGC 57 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000087456 1 1 2 81 16 450871 460659 TCCTACAGAGAAACAGAAAGG 57 450810 450828 TTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 2 1 1 66 1 141675227 141679355 AAAGAAGAAAGGCGGAAGG 58 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000079908 1 1 2 60 1 141944117 141944135 TGGCCTTGTAAACCCTCTG 60 141944871 141944891 GCAATTGTTGAGCATGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066114.2 ENSRNOG00000052777 ENSRNOT00000088946 2 1 1 60 9 3026499 3026518 GGAAGTGATTTCAAAGTGCC 58 3026458 3026478 TGTTCTGATGATTTCCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065933.2 ENSRNOG00000059254 ENSRNOT00000079602 2 1 1 101 6 146981839 146981860 GATTTGGAGATGATAGAGCCAG 59 146981919 146987958 CATTTCTATGTTGAACACGAGG 58 Novel Rattus norvegicus 81 AABR07004428.1 ENSRNOG00000061889 ENSRNOT00000089908 2 1 1 60 1 142500829 142500848 ACTAAACACCAGTCCTCTGC 60 142511529 142511547 CTCTCCAGAGCTAGTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053450.1 ENSRNOG00000056480 ENSRNOT00000086990 1 1 1 81 3 107406273 107406291 GCTAATAGCTCTCGAGCTG 58 107403112 107406231 CATGTGGAATCATTATCTCAGC 57 Novel Rattus norvegicus 81 AABR07024669.1 ENSRNOG00000051588 ENSRNOT00000090991 1 1 1 83 16 11402198 11404155 AGATAAACAGGAAGGCAGTC 57 11404201 11404219 TAACTCCTTCCTTCAGGCA 58 Novel Rattus norvegicus 81 AABR07004733.2 ENSRNOG00000058110 ENSRNOT00000083929 3 1 1 139 1 153446213 153461782 TTCTGCTTTCCTCAGAGCA 59 153446092 153446110 TTTCTTTGCTTGCACAGCA 59 Novel Rattus norvegicus 81 AC096454.2 ENSRNOG00000053575 ENSRNOT00000090408 1 1 1 88 9 17762357 17762380 GTGAGACTGATAGATAAAGACCCA 60 17756666 17762310 TGCGACAGGCATATACTCC 59 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000091253 3 1 2 164 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778561 21778579 CACAGGTAGGACTCACCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004868.2 ENSRNOG00000057308 ENSRNOT00000082386 3 1 1 87 1 163459609 163459627 CTCTTCTGAGGAGATGGCC 59 163459678 163460810 TTGGAAGCTCTCCTGAGTG 59 Novel Rattus norvegicus 81 AABR07004868.1 ENSRNOG00000056551 ENSRNOT00000081639 3 1 1 81 1 163520433 163522430 CCTCAGACAAGGATCTGGG 59 163522473 163522493 CTATGGATGTGCAGATTGCTG 60 Novel Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 1 1 1 60 3 125025762 125025780 CATCAGTGCTTACACAGCT 58 125023194 125025738 TTGTGTCCTCACTTTGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000084705 1 1 3 91 12 22357216 22357234 ATCCAGTGCCAGAATTCCC 60 22357288 22357707 CACTGCAGAGTGATTTCGAC 59 Novel Rattus norvegicus 81 AABR07024951.1 ENSRNOG00000060620 ENSRNOT00000080347 3 1 1 90 16 22311704 22317819 ACAGTAACTATCCCAGAGTTGG 59 22311635 22311653 TTTCATCTCCACCGTCCTG 59 Novel Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 2 1 1 60 16 29984016 29993404 CTGGGATGCTTTCAATACTGAC 60 29983977 29983997 ACTTAACTCCTTTCTCCAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035868.1 ENSRNOG00000056105 ENSRNOT00000078623 1 1 1 80 12 26242359 26246062 GTAGCTCTGAGTGTTATACTCCA 59 26246102 26246120 CAGCTGGTCTTTGGATGGA 60 Novel Rattus norvegicus 81 AABR07053953.1 ENSRNOG00000053531 ENSRNOT00000079800 2 1 1 84 3 133764863 133778898 CCACAAAGAACAAAGTCACTC 58 133764799 133764818 TGAGGATATAGCAGGAGCTG 59 Novel Rattus norvegicus 81 AABR07054025.2 ENSRNOG00000058266 ENSRNOT00000087994 1 1 1 70 3 136374255 136376516 GTAGAAAGTTTGTCCCTTGGG 59 136376548 136376566 AATGCACCTCAGGTCAGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07005573.1 ENSRNOG00000057531 ENSRNOT00000091260 2 1 1 65 1 188254896 188254914 CAATTCGAGTCGGGATTGG 59 188254943 188258260 ACACTTCGGGATCCTTCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07005573.1 ENSRNOG00000057531 ENSRNOT00000091260 3 1 1 65 1 188254896 188254914 CAATTCGAGTCGGGATTGG 59 188254943 188258260 ACACTTCGGGATCCTTCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 2 2 3 64 3 142293161 142297266 AGATCATGGATGTACCTTCCAG 60 142293118 142293136 GAATGCAGGGTCTCCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005593.1 ENSRNOG00000054843 ENSRNOT00000080401 3 1 1 80 1 189698794 189698815 AGATCACTACTACATTGCTCCA 59 189697262 189698757 CTGAGGTACTCAATGTATGACTG 59 Novel Rattus norvegicus 81 AABR07067310.2 ENSRNOG00000057174 ENSRNOT00000080238 1 1 1 80 9 39537680 39537700 TAATAACCTGGTCGTCATTGC 59 39534101 39537638 ATTAATCTGCAGGGTGAGC 58 Novel Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 3 1 1 95 12 33210021 33212895 AAGATCTCTGCACCTCAGG 59 33209944 33209962 GTTCCAGATGAGCCAGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054315.1 ENSRNOG00000061670 ENSRNOT00000090434 3 1 1 103 3 147501125 147501715 CCAGAACACAGAAAGTGGG 58 147501782 147501800 CTGGTTGAGATGCTCTGGA 59 Novel Rattus norvegicus 81 AABR07067404.1 ENSRNOG00000052867 ENSRNOT00000079214 1 1 1 83 9 43495254 43495277 CCTCTACATCTACTGTATGTTCTC 58 43495317 43495444 GATACGCAGTAGATGTAGAGG 57 Novel Rattus norvegicus 81 AABR07025937.1 ENSRNOG00000053393 ENSRNOT00000085445 3 1 1 80 16 55897920 55897940 AAACACATGCAAAGACCAGTC 60 55897982 55899650 TCAGAACAAACTCCCAGGG 59 Novel Rattus norvegicus 81 AABR07067471.2 ENSRNOG00000052452 ENSRNOT00000077855 3 1 1 103 9 48091085 48091104 TGGAGGCTCTGAATTGTAGG 59 48091170 48102246 CTGTCCATCTCTTGAGCCC 60 Novel Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000081777 1 1 2 80 16 60002273 60004355 GGTTGATGATGCTCAGATCAC 59 60002213 60002231 TTCTGGTCCACTTGGAACC 60 Novel Rattus norvegicus 81 AABR07026044.1 ENSRNOG00000061769 ENSRNOT00000078296 1 1 1 82 16 60771670 60771688 CACATTTCCCATGGTTCCA 58 60771731 60773885 TAGATCTTTCTTAGCAACCTCC 57 Novel Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 1 1 1 65 9 59448126 59450873 CCTGTTCATAGTCACAGGGT 59 59450900 59450919 TATCTTCCATAGCTTGCCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 3 1 1 66 9 59448126 59450872 CCTGTTCATAGTCACAGGG 57 59450901 59450920 GTATCTTCCATAGCTTGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072945.1 ENSRNOG00000051892 ENSRNOT00000090476 1 1 1 80 3 156629631 156631322 CTACTCAAATCACTTCAGCTGC 60 156631363 156631381 AAACGTCCATGCTGTTGAC 59 Novel Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 1 1 1 60 12 42899757 42902404 GGAATCCCAAAGTAACAGACC 59 42899717 42899737 ATTGGATTATTGCGGATGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054512.1 ENSRNOG00000051934 ENSRNOT00000083405 3 1 1 80 3 158692845 158693110 GACTCAAATACGGATTTGAGGA 58 158693149 158693169 CTGATAATCCCAGAATGTGGT 58 Novel Rattus norvegicus 81 AABR07005955.1 ENSRNOG00000053950 ENSRNOT00000081722 2 1 1 81 1 208694326 208694344 CTTGCAACTGTGAAGACCC 59 208684241 208694281 ATGATGAGGCCTAAGCCAG 59 Novel Rattus norvegicus 81 AABR07036435.1 ENSRNOG00000057583 ENSRNOT00000083739 1 1 1 80 12 43221990 43222008 GCTCTTCACAGAGGATGGG 60 43219162 43221947 CTTTCGGAGACACTCTTCCT 59 Novel Rattus norvegicus 81 AABR07036514.1 ENSRNOG00000057122 ENSRNOT00000081685 2 1 1 102 12 45941031 45941437 GACCAGAGATTCTTTCCCAG 58 45941502 45941520 TTCTGTCTCTTCGCTTTCG 58 Novel Rattus norvegicus 81 AABR07026241.1 ENSRNOG00000059687 ENSRNOT00000083516 3 1 1 80 16 69319803 69319821 AGGTGAACTGTGCTACTCG 60 69320816 69320834 GTGAAGAGGCTCAGAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026246.1 ENSRNOG00000060471 ENSRNOT00000083782 1 1 1 60 16 69570518 69570536 TTAACTACCAAGCGCACAC 59 69571386 69571404 TCTCCTCTTCCTCTTCCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07067855.1 ENSRNOG00000061886 ENSRNOT00000089791 2 1 1 80 9 68061629 68061647 AATCTTCCTACCGCTGTCC 59 68043023 68061588 TCTCCAATGTAGCTCCTTTCTC 60 Novel Rattus norvegicus 81 AABR07036556.1 ENSRNOG00000056283 ENSRNOT00000088941 2 1 1 80 12 48061807 48063812 AACCTCATCTATACGTATATCGGG 59 48061750 48061770 CTGGCTGGAGGTATAGATTCC 60 Novel Rattus norvegicus 81 AABR07054656.1 ENSRNOG00000061341 ENSRNOT00000088863 2 1 1 81 3 165962083 165981320 GATGATAGCAAGGTCTTAGACAG 59 165984924 165984942 CGTTGGTTCAAATCCACCT 58 Novel Rattus norvegicus 81 AC094001.2 ENSRNOG00000054222 ENSRNOT00000088592 3 1 1 61 1 216936885 216936903 AGGAGATTTCTGCCCTGTG 59 216934547 216934565 GGAGTTGAGGACTCTTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933 3 1 2 81 9 71388856 71394826 ATGACTGCATTCTAAGGCAC 58 71388794 71388818 GTCCCTTTATCTTCTTTACAAGGAG 59 Novel Rattus norvegicus 81 AC098981.1 ENSRNOG00000053867 ENSRNOT00000090640 3 1 1 62 1 218269348 218273163 GAAAGCTCTATGGAGGTGC 58 218269304 218269322 CATCTCAGGGCAGGAAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07054801.1 ENSRNOG00000061502 ENSRNOT00000085438 1 1 1 80 3 169641762 169641780 AAGATGACAGGTCTCCAGC 59 169641823 169657004 AATGTTCCAACACCTTGACG 59 Novel Rattus norvegicus 81 AABR07006120.1 ENSRNOG00000056396 ENSRNOT00000091992 3 1 1 80 1 222972209 222973710 TGACTCAAGAAATGCAGATCC 58 222972149 222972168 CAGTACTTGTCAAAGAGGCA 58 Novel Rattus norvegicus 81 AABR07006197.1 ENSRNOG00000053356 ENSRNOT00000077519 1 1 1 80 1 224139613 224160928 AGCAAATGGGAACAATGGT 58 224139551 224139573 GTATCTCCTCTGAACTAAGATGC 58 Novel Rattus norvegicus 81 AABR07037897.1 ENSRNOG00000057833 ENSRNOT00000083859 3 1 1 81 X 35164937 35164958 TGGAAAGACTGTATTTCTGCTG 59 35162515 35164896 TGACATTTCTATTTGCGGGT 58 Novel Rattus norvegicus 81 AABR07054991.1 ENSRNOG00000060218 ENSRNOT00000086637 3 1 1 93 3 177457795 177457909 GGATGTGAAGTTTATCTTTCTCCTG 60 177457726 177457744 TGTCCTGTGTAAGGAGCAC 59 Novel Rattus norvegicus 81 AABR07026534.3 ENSRNOG00000056791 ENSRNOT00000087854 3 1 1 63 16 81262039 81262057 GGAACAAGACAGCTTGAGC 59 81265336 81265354 CCTCGGCAAGAGTCTAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038174.1 ENSRNOG00000057678 ENSRNOT00000089445 2 1 1 62 X 41879024 41879042 TGCTCCTGGTAATAAAGGC 57 41876408 41876429 CCAGTACATAGGGTATAACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC127756.1 ENSRNOG00000051474 ENSRNOT00000092096 1 1 1 84 16 82183571 82183589 CTGAGATTCAACGCCTCTG 58 82179821 82183525 ATTCAGACCTAGAAACCTGTG 58 Novel Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 1 1 1 69 16 82332004 82332022 TTCATTGTGGACATGGCTG 59 82331610 82331971 GAAGACAAGCCTTGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055885.1 ENSRNOG00000059026 ENSRNOT00000089438 2 1 1 80 7 14838378 14838397 CTTTGACCCAGAAAGTCGTC 59 14838440 14838704 TGTCCTATGCAGTTCCTGG 59 Novel Rattus norvegicus 81 AABR07056014.1 ENSRNOG00000053585 ENSRNOT00000081476 3 1 1 81 7 18340162 18341617 AGAGGTAGGATCTGGTATATCCA 59 18340103 18340122 AAGTTATGGGCTGAAGGAGG 60 Novel Rattus norvegicus 81 AABR07006654.2 ENSRNOG00000059909 ENSRNOT00000080454 3 1 1 90 1 244447164 244447809 GCTACAAAGAAGACAACTGCA 59 244448319 244448337 CTTGTCTTCCCATGCAAGG 59 Novel Rattus norvegicus 81 AABR07006656.2 ENSRNOG00000055788 ENSRNOT00000082007 2 1 1 80 1 244800241 244800259 ATAGGCTTCTGTCTTTGCC 58 244799106 244800197 AGGAGTTTCTTGACCAGTG 57 Novel Rattus norvegicus 81 AABR07068350.1 ENSRNOG00000057530 ENSRNOT00000088137 3 1 1 83 9 100261099 100261117 AACCTTTCCCGATACGGTC 60 100259625 100261053 TTCAAATGCCTTTCCAAGCA 59 Novel Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922,ENSRNOT00000084598 2 2 2 81 16 87443296 87443315 CGTAATGCATCATCACATGC 58 87443359 87470789 GAGGCAAATCTCAGGTGTG 59 Novel Rattus norvegicus 81 AABR07026663.1 ENSRNOG00000053302 ENSRNOT00000080629 3 1 1 82 16 88573113 88583534 TTTGAACATGCCGAGATGG 59 88573049 88573067 TTCAAGGCCTTCACTTTGG 58 Novel Rattus norvegicus 81 AABR07040249.1 ENSRNOG00000057035 ENSRNOT00000086634 2 1 1 83 X 96396417 96396435 CCTGTGACAAGTTTGCAGG 59 96396141 96396159 TTCCCAGAAAGAGTTGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.2 ENSRNOG00000056699 ENSRNOT00000077294 2 1 1 81 7 23246526 23246548 CCGATTGACTACCTATATTCACC 58 23183847 23246491 CATCTCCTTTATCATAGATGTTGGG 59 Novel Rattus norvegicus 81 AC139608.1 ENSRNOG00000054147 ENSRNOT00000078596 1 1 1 80 17 9470368 9470387 CTCAAGCCTTCAGATCACAG 58 9470430 9471108 GCAACACATTGTTACGCAC 59 Novel Rattus norvegicus 81 AABR07056515.1 ENSRNOG00000059844 ENSRNOT00000077957 2 1 1 83 7 27973712 27973730 AAACTGCTGAGTTCAGGGT 59 27973773 27973954 CTGGCACAGTTGAATATCATCTC 60 Novel Rattus norvegicus 81 AABR07068736.1 ENSRNOG00000061416 ENSRNOT00000091298 2 1 1 60 9 117214070 117257701 CTGTCCTTCATGGGTAGTG 57 117257719 117257743 GTAGCGATGATATTATCTCATCTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07006854.1 ENSRNOG00000053865 ENSRNOT00000079393 2 1 1 81 1 259018930 259018948 CTTGGTGGAATGAGTGGAG 58 259018992 259024184 ACAATCCGATCTTCAATGCT 58 Novel Rattus norvegicus 81 AABR07027028.1 ENSRNOG00000056293 ENSRNOT00000091958 1 1 1 80 17 11605351 11605369 CTTGACGACAACAAGTGGG 59 11602369 11605312 CCATTCTGATACCATCACTTTCTG 60 Novel Rattus norvegicus 81 AABR07027029.1 ENSRNOG00000053786 ENSRNOT00000087925 3 1 1 67 17 11654751 11654772 TCTCCGTGACTTAAGAATAGTC 57 11651350 11651368 AGAAATCATGGGCTAGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 2 1 1 72 19 8404493 8404512 TGGATGAGAATGGCATTCTG 58 8368609 8404459 AAACTGTTTGGTGCTGACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059,ENSRNOT00000077575 2 2 3 89 8 5173924 5173944 ATTCAGTGAAGCAGACATCGA 60 5171985 5173879 GACTTTATGAAGTCAGGATCAACTG 60 Novel Rattus norvegicus 81 AABR07073295.1 ENSRNOG00000057318 ENSRNOT00000088579 3 1 1 81 7 34868246 34868264 CTTTCTGCTGAGCTACACC 58 34867793 34868201 GTGCCTTACATGAGCTCTC 58 Novel Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 2 1 1 63 7 36160462 36160480 AATCCATCCCTCAAGCCTC 59 36160504 36164762 ATCATTACACAAGGAGGAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC096326.1 ENSRNOG00000060966 ENSRNOT00000086048 1 1 1 96 1 265421210 265421228 CTCTACCCTCAAGTGTCCT 58 265429561 265429579 AGTTGTCCTTGGTCTCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042911.1 ENSRNOG00000056588 ENSRNOT00000082572 2 1 1 100 19 14644785 14646335 TCCAGTCTTTATGACTGCAC 58 14646398 14646416 TTCTGAGCAGAGACCTGAG 58 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 1 2 2 90 17 21293251 21294174 AGAACAATACACCACTTGGG 58 21293180 21293200 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07042990.1 ENSRNOG00000060444 ENSRNOT00000078262 2 1 1 81 19 15633796 15635263 CTTCAGAGAACCCGGAAGG 60 15635308 15635326 CTGACGTATCACTTCCGCT 60 Novel Rattus norvegicus 81 AABR07069213.1 ENSRNOG00000054064 ENSRNOT00000090411 1 1 1 83 8 12644484 12644835 CAGACTGTGAGGTCCTTCG 60 12644419 12644437 CTTCAGAGACCCAGCTTCC 60 Novel Rattus norvegicus 81 AABR07056953.1 ENSRNOG00000061159 ENSRNOT00000078831 2 1 1 80 7 48553918 48553937 TCCAGGATGTCATCTACGAC 59 48553977 48644731 CTGTTAGAGATTCGATGTCCTG 59 Novel Rattus norvegicus 81 AABR07043030.1 ENSRNOG00000055058 ENSRNOT00000083618 1 1 1 60 19 17928890 17928908 GCATCAAACACAGCTTCAC 58 17926611 17926629 GAGAAAGCTATGCAGTCCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07006911.1 ENSRNOG00000053954 ENSRNOT00000080845 1 1 1 128 1 270729799 270729817 AGAAGTACCTGGACAACGG 59 270712206 270712224 TAGATTCTGCCAGGTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057171.1 ENSRNOG00000061104 ENSRNOT00000078560 1 1 1 95 7 58622800 58622818 TGTAACCTGTTCGCTACGG 60 58622877 58623773 GACAGACAGACCACTCCTG 59 Novel Rattus norvegicus 81 AABR07027407.1 ENSRNOG00000057161 ENSRNOT00000090633 2 1 1 80 17 28825191 28825212 TTTGACTAAACGTAGGATGGGA 59 28825252 28829265 ACCAGGTAAGCTATTTGCAC 58 Novel Rattus norvegicus 81 AABR07057382.1 ENSRNOG00000052935 ENSRNOT00000080127 3 1 1 189 7 68891891 68891912 GTGTGACGTATGTGTATGAGAC 59 68892062 68926517 AATCTTTCTCCCGGGTGTG 60 Novel Rattus norvegicus 81 AABR07027571.1 ENSRNOG00000052547 ENSRNOT00000083376 1 1 1 80 17 37358970 37360542 GAAGTAGAGGGAGAAGGTGTC 59 37360579 37360602 CATTTCAGTAGGAAGTACTTCTGC 60 Novel Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000084015 2 1 2 81 17 37687587 37689159 GAAGTAGAGGGAGAAGGTGTC 59 37689197 37689220 GCATTTCAGTAGGAAGTACTTCTG 60 Novel Rattus norvegicus 81 AABR07027692.1 ENSRNOG00000059534 ENSRNOT00000077648 2 1 1 115 17 40857372 40857390 CTAGACAGGACACATGGGA 58 40854165 40857295 CCATTCTCCAGAAATCATGGG 59 Novel Rattus norvegicus 81 AABR07057510.1 ENSRNOG00000058442 ENSRNOT00000080586 2 1 1 80 7 75169755 75169777 GAAGATTCATGCCCAAGAATCTC 60 75167499 75169720 GTGTCCTTTGTATCATTCTGATGG 60 Novel Rattus norvegicus 81 AABR07057611.1 ENSRNOG00000058911 ENSRNOT00000082925 2 1 1 83 7 80165132 80165151 CCCTTTATTGCCTGAGAACC 59 80164753 80165087 CATATTTCCCTTGGCTCTGC 59 Novel Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 1 1 1 71 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82394597 82411849 GGTTTGGACACAGAGTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007409.1 ENSRNOG00000058632 ENSRNOT00000084327 2 1 1 73 2 13055058 13055082 GTGTGAATAGAATCAGAAGGTTCTC 60 13054482 13054502 CTATCACCGTTCTTTGAAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007584.1 ENSRNOG00000051789 ENSRNOT00000085567 2 1 1 80 2 20350018 20350609 TCTCTGGCAATGAGAAATGC 59 20350650 20350670 CCTTGAGTTCGTCACTTTCTG 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000082351 1 1 3 80 7 97358540 97421370 TCTTCCTTCTGAAGTTCTTCCT 59 97358481 97358500 GCTCTTCTGCATGATCTTGG 59 Novel Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 1 1 1 60 10 16235993 16236012 ACAAGAGTCCTGTACTTGGA 58 16236035 16236416 TTGTGGAGTGAAGGATGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041316.1 ENSRNOG00000054068 ENSRNOT00000085411 3 1 1 84 X 126062959 126117063 CCATACATACCTTAAAGGCTTGC 60 126117101 126117125 CCTTATTATTTATGCAGAGGACCTG 60 Novel Rattus norvegicus 81 AABR07058167.1 ENSRNOG00000052211 ENSRNOT00000077182 1 1 1 80 7 103150050 103150069 TCACGTAGAAAGAACAAGCT 57 103149001 103150007 AACCAAAGTACCTTGGCTG 58 Novel Rattus norvegicus 81 AABR07029451.1 ENSRNOG00000056168 ENSRNOT00000077723 2 1 1 65 10 29084457 29084478 ACTCCTCTGCTTACATTAGGAC 59 29085432 29085453 GCTTCTTCAGTCCTGTATTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029452.1 ENSRNOG00000058208 ENSRNOT00000088987 1 1 1 79 10 29189640 29189658 TGGACAGACTCAGTTTCCC 59 29190398 29190416 TTTCAGCTTGTCTGTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058174.1 ENSRNOG00000054723 ENSRNOT00000084323 2 1 1 130 7 103622203 103622908 TAACGGATTCATCCGGAGC 60 103622996 103623020 CCTTAAGTAACATAACAGTCAACCC 60 Novel Rattus norvegicus 81 AABR07007717.3 ENSRNOG00000060525 ENSRNOT00000090546 3 1 1 80 2 25535832 25536868 GCCAGTGGATAGATCTCCG 59 25536912 25536930 GATGACGATCGGACTTCCA 59 Novel Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 1 1 1 60 X 129561489 129561509 AGGAGGAATTACAATAGCCAG 57 129482887 129561470 TCTCTTGAGTAGATTTCTCCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07041514.1 ENSRNOG00000051679 ENSRNOT00000077586 2 1 1 96 X 132099821 132099839 CAAAGGACATGGATCCGAC 58 132099655 132099764 CTTGAAAGCCAAATACTGTGTC 58 Novel Rattus norvegicus 81 AABR07058240.1 ENSRNOG00000053987 ENSRNOT00000087433 2 1 1 60 7 106055589 106055607 TCCAAACAGATGTTGACCC 58 106054606 106054626 TGGATCTCTTCCAAGTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041794.1 ENSRNOG00000052271 ENSRNOT00000088248 3 1 1 60 X 140170880 140170899 TCTAAGACCTTGGACCTCAG 58 140170921 140170940 CCAGGATGAGATAACAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141334.3 ENSRNOG00000057687 ENSRNOT00000083724 2 1 1 107 10 36628688 36628707 CTTACAAGGGACCTTGAGAG 57 36612794 36628618 GATCTCTGGAGTGCTTGAG 57 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535,ENSRNOT00000086794 3 2 2 124 X 149273958 149273976 AGAAGAGCCTACACAGAGC 59 149274236 149274254 GAGCCAGCACTTCTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC126640.1 ENSRNOG00000054866 ENSRNOT00000085075 1 1 1 113 10 38535651 38535669 GCTCTTGGCTTTATTTGGG 57 38534987 38535008 CAGAAGAGACTCATGAGTAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072112.1 ENSRNOG00000057356 ENSRNOT00000087751 2 1 1 82 10 40707733 40710621 ACGAACAGGTATCTTGTGTC 58 40707670 40707689 TACATTCCTGCTTGATTCCC 58 Novel Rattus norvegicus 81 AABR07007798.1 ENSRNOG00000059761 ENSRNOT00000090072 1 1 1 80 2 28839394 28839414 AGGAATGACAGTGAACAACTC 58 28834675 28839354 TGCAATGAAGTCCTTCAAGAC 59 Novel Rattus norvegicus 81 AABR07042440.2 ENSRNOG00000057466 ENSRNOT00000080296 3 1 1 81 X 155796120 155796138 GCTCAAGTAAGAGGCAAGC 59 155794450 155796078 TTTCTGCATCCTCAACATTTGG 60 Novel Rattus norvegicus 81 AABR07058554.1 ENSRNOG00000054112 ENSRNOT00000090656 2 1 1 62 7 124624946 124624966 TGGGATCATCTGATATCTGGG 59 124626609 124626627 GGATCTCTGAGCCTCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027919.1 ENSRNOG00000057076 ENSRNOT00000091951 1 1 1 80 17 49053364 49053383 AAAGAGGAGTATCCTCCCAC 58 49035694 49053324 TGGATAACTTTCTTCTCAGCTC 58 Novel Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 1 1 1 71 7 126382983 126383583 TCACTCCAGAGACAAAGCC 59 126383618 126383636 CTCATTCTGCTCAGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070341.2 ENSRNOG00000053265 ENSRNOT00000088695 2 1 1 142 8 66357980 66358109 AGTTGTCCCAGGATGACAG 59 66357856 66357874 CCATGGAGCTCAGAGAAGG 60 Novel Rattus norvegicus 81 AABR07058608.1 ENSRNOG00000060713 ENSRNOT00000081449 3 1 1 81 7 127566845 127566863 ATCCACTGAGAATCGTTGC 58 127572172 127572190 CAGGATGCAGTAAGGTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028092.1 ENSRNOG00000054941 ENSRNOT00000088096 2 1 1 86 17 56784469 56784487 ACAGTTTCCTGCTGAGACC 60 56782572 56784421 TGTAAATGAGTCTCCAGTGCA 60 Novel Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 3 1 1 184 20 6363939 6383413 CAAAGGCCTCTGAGAGGTC 60 6383560 6383579 GGAAGAAACCCTGAAGTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028113.1 ENSRNOG00000060370 ENSRNOT00000082440 3 1 1 80 17 57471263 57471284 CTTCCTGTACACTTACCAACAG 59 57471323 57471896 AGGTAGAAGTAGGCAAACCTC 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089552 3 1 2 82 8 82418052 82419539 GCCCAGATTTGATCAAGATACAG 60 82419581 82419599 CCTCTGGTTCTTCCTCTGC 60 Novel Rattus norvegicus 81 AABR07028465.1 ENSRNOG00000055963 ENSRNOT00000087930 3 1 1 81 17 71152105 71158600 TTGGGAAATATGCAGAGAAGTG 59 71152045 71152066 GATGGCTACTTGAAAGTTTACG 58 Novel Rattus norvegicus 81 AC125620.1 ENSRNOG00000054749 ENSRNOT00000077893 1 1 1 80 4 28615215 28615234 CCTCAATCTGGTTGCTTCTC 59 28603281 28615174 ATGACGAAACTCAGTAACCCT 59 Novel Rattus norvegicus 81 AABR07070887.1 ENSRNOG00000060958 ENSRNOT00000085803 1 1 1 80 8 89881601 89881621 TCTTCATGAATGTGGATGAGG 58 89877770 89881561 TTCCAACCTCATGAGTATGTG 58 Novel Rattus norvegicus 81 AABR07008107.1 ENSRNOG00000054714 ENSRNOT00000085763 2 1 1 60 2 43788868 43788888 ACATTCCATGATCCTAAGCAG 58 43783152 43783171 GTCTGCTGAAGTCTCTATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008118.1 ENSRNOG00000059665 ENSRNOT00000083525 2 1 1 80 2 44272140 44272162 CAGGATAAGAAATTGTACCCACC 59 44266276 44272101 GATGTGTTGATGCTCGTCAC 60 Novel Rattus norvegicus 81 AABR07071117.1 ENSRNOG00000057191 ENSRNOT00000078753 3 1 1 80 8 100751527 100751824 TCCAATACATTGTGGATATGGC 59 100751863 100751883 CTGAAATGGTTACTGCAAGGG 60 Novel Rattus norvegicus 81 AABR07059875.3 ENSRNOG00000054870 ENSRNOT00000089845 2 1 1 80 4 39642546 39643153 CCAAGGTGTGAAACATTGGT 59 39642485 39642506 CTTGCACTGACAAATATCTGGT 59 Novel Rattus norvegicus 81 AABR07044837.1 ENSRNOG00000052735 ENSRNOT00000091412 1 1 1 80 20 23045665 23045684 TCACTATGGTCCCTTCTGTC 59 23045727 23046632 ACTTGACTCAGGAGGTCTG 58 Novel Rattus norvegicus 81 AABR07072984.1 ENSRNOG00000059602 ENSRNOT00000087184 1 1 1 80 4 43161601 43163816 TGCTTTCCATGAAACAAGCC 60 43163856 43163877 CATGAAGTCAGACATTGTTGCA 60 Novel Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 2 1 1 60 4 44646973 44646991 ATGCTCATGGCTCAATGTG 59 44639618 44646953 CATATACCTGTCTTTCACACTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC110102.2 ENSRNOG00000058227 ENSRNOT00000089694 2 1 1 80 4 44660397 44663691 GAAAGTCAAGGGTTCAGAAGAC 59 44660338 44660359 CACAGGGACACTAGAATTTCTG 59 Novel Rattus norvegicus 81 AABR07071245.1 ENSRNOG00000052905 ENSRNOT00000087092 2 1 1 80 8 106631770 106636583 GTGAACAGGTTTCACTTGGAG 60 106636625 106636643 GGCATGAAGCACTCTTCAG 59 Novel Rattus norvegicus 81 AABR07008287.1 ENSRNOG00000056600 ENSRNOT00000079713 2 1 1 91 2 51600255 51613843 ATCTTCAAGCTGCAGATCAG 58 51600183 51600201 TATCCACTGTCCCACAGAG 58 Novel Rattus norvegicus 81 AABR07045015.1 ENSRNOG00000054550 ENSRNOT00000084794 2 1 1 82 20 31695979 31696478 GTTACGAAATGCCCATCCTG 59 31696523 31696541 CACAGGAAGTCTAGACGGG 59 Novel Rattus norvegicus 81 LOC102550537 ENSRNOG00000061575 ENSRNOT00000086320 3 1 1 80 8 112398670 112411485 ATATCTCCACAGATCCTGCTC 59 112411527 112411545 TTCATGTTGCCAAGGACAC 59 Novel Rattus norvegicus 81 AABR07045105.1 ENSRNOG00000058455 ENSRNOT00000077919 2 1 1 102 20 33983849 33985605 CAGTGAATATGACTCTATCACTGTG 59 33985663 33985683 TTCTACCACAGTATCCAACCA 59 Novel Rattus norvegicus 81 AABR07060261.1 ENSRNOG00000059379 ENSRNOT00000086493 1 1 1 86 4 65074129 65074147 GGAGGAAATGCTGCAACAG 60 65073058 65074082 TGTTGTGAGACCTTTATCTGGA 59 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000077266 2 1 3 81 2 59878627 59878645 TTCATGGAATGCAAGCAGC 60 59878689 59878828 CCTTTGCCTACTGAATGCAG 59 Novel Rattus norvegicus 81 AABR07008485.1 ENSRNOG00000061419 ENSRNOT00000087846 2 1 1 62 2 61038800 61038820 CACAGGATGAAACGTACTCAC 59 61038588 61038609 CAAGATAGCAGATTAGCTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 2 1 1 68 20 48814472 48815822 CAAGTCATAAACAAGCAAGGAC 58 48814425 48814444 ATTTCCCTGGATACACCACG 60 Novel DesignNoJunction Rattus norvegicus 81 AC120721.1 ENSRNOG00000054040 ENSRNOT00000077346 2 1 1 78 4 78667558 78667576 GTGCAATTCATCTTGCTCC 57 78684474 78684493 GGGTTCAGTCTTCTGTACTG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103694564 ENSRNOG00000053540 ENSRNOT00000077210 1 1 1 114 Y 2040106 2040326 CGCTGAAGTTCTCTAGATAACAC 59 2040400 2040418 CACCAGAAGAGTCTCAGCA 59 Novel Rattus norvegicus 81 AABR07060589.1 ENSRNOG00000061189 ENSRNOT00000089053 3 1 1 139 4 82481809 82481827 ATACATCGCTGTTGTGCCT 60 82485000 82485659 CTTTCCTGCACACCTTTCC 59 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 1 1 2 104 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131397402 131397422 TCCCTCTGAAGAACTTCATGG 60 Novel Rattus norvegicus 81 AABR07044011.1 ENSRNOG00000051522 ENSRNOT00000079674 3 1 1 80 19 52887166 52887187 GCTTTATCATTCAGGTAGCAGC 60 52885957 52887126 CTAGGAATGGCCCTGTATGG 60 Novel Rattus norvegicus 81 AABR07044049.1 ENSRNOG00000056656 ENSRNOT00000090624 3 1 1 102 19 53801411 53926641 GTAACAAAGGTTACCTCAGCT 58 53926705 53926723 TGGATAGACTGTCTGTGGG 58 Novel Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 2 1 1 72 2 82771685 82772677 TGTTGTGACACATGAGGCA 60 82772711 82772731 TGAATTCTTACACTGGAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 2 1 1 66 2 87734877 87734895 AATAAGGAAACCTGCAGCG 59 87734924 87785151 ATAGTTGAGTTGCAGAAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044173.1 ENSRNOG00000055152 ENSRNOT00000077683 2 1 1 81 19 61511737 61511755 GATGCTGGGATGTATCCTG 58 61511800 61536444 TCTAGGCTTCTGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07009338.1 ENSRNOG00000055758 ENSRNOT00000091883 2 1 1 82 2 93460431 93488481 GTGAGTGCTTGAATCATTTGC 59 93460369 93460388 AGCCTCACTTGAACAATGTG 59 Novel Rattus norvegicus 81 AABR07058976.1 ENSRNOG00000054065 ENSRNOT00000077914 3 1 1 108 7 145727981 145728001 AGGTTTAGGGTTAGGGTTAGG 59 145728310 145728328 CTACCCTAACCCTAACCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 2 1 1 78 1 281314293 281314681 ATGGAAGTTACCCAGCCAC 60 281314233 281314253 GTTTCGAGGAAGATTTGTCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009600.1 ENSRNOG00000056127 ENSRNOT00000086516 3 1 1 99 2 105476143 105476164 ATCCTGCTTCTTAAATGAACCC 59 105475789 105476089 GACAGCATATCCTTATTGTATAGCC 59 Novel Rattus norvegicus 81 AABR07009639.1 ENSRNOG00000053422 ENSRNOT00000088480 2 1 1 80 2 106849345 106850662 GACTACAATGAACCCTACATAAAGG 59 106850700 106850718 AGGGTTTCTCCTTCCTCCT 60 Novel Rattus norvegicus 81 AABR07010502.1 ENSRNOG00000051733 ENSRNOT00000084083 3 1 1 68 2 137473722 137473744 CCAACCAACCTCATGTATTACTC 59 137472762 137472782 GTATCTGAGGATGTCACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC111231.2 ENSRNOG00000058300 ENSRNOT00000078721 2 1 1 80 2 150259717 150259735 CCACTTGTGTCTCATGGTC 58 150259776 150262582 TTAGTGTGGTCTTAGAACACCT 59 Novel Rattus norvegicus 81 AABR07011127.1 ENSRNOG00000053128 ENSRNOT00000077124 3 1 1 60 2 158795224 158795245 TCCTCAGAGAAACAAGAAACCA 60 158791518 158791537 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011746.1 ENSRNOG00000053955 ENSRNOT00000080573 1 1 1 80 2 167987439 167996086 GAAAGAAACCCAAAGGAACAG 58 167996127 167996146 TTCTGTCTGTGATGTTCTGC 58 Novel Rattus norvegicus 81 AABR07012081.1 ENSRNOG00000051552 ENSRNOT00000087599 1 1 1 60 2 184915543 184915564 CAAGTTCTTGGTGACTTCTCTG 59 184916425 184916443 CTCAGATTTCTTGCGTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC098750.2 ENSRNOG00000054024 ENSRNOT00000085471 1 1 1 98 2 188597363 188597381 CTAATCAAACACCTGCCCG 59 188596447 188596465 TCTGTAGGCTTTGTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012276.1 ENSRNOG00000061912 ENSRNOT00000085249 3 1 1 82 2 192045711 192060823 GGAAGGAAGTCTTTAATTCTCAGC 60 192060864 192060882 TTTCCTTCTGGACCCTTGG 59 Novel Rattus norvegicus 81 AABR07012613.1 ENSRNOG00000058608 ENSRNOT00000086269 2 1 1 83 2 199439401 199439419 AGAGTCTTTCCTGGGAAGC 59 199433087 199439354 GTGGGTGACTGGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07014118.1 ENSRNOG00000058018 ENSRNOT00000090252 1 1 1 85 14 1439967 1439985 AGAAGCTTCACAAGTTGGG 58 1438918 1439918 AGAGGATGGCATCTGACTG 59 Novel Rattus norvegicus 81 AABR07014125.2 ENSRNOG00000059179 ENSRNOT00000084593 1 1 1 80 14 1536602 1536620 ATCAGATCTGCAGTGGCTC 60 1514979 1536559 CTTTGGGATTCATGTGCCTG 60 Novel Rattus norvegicus 81 AABR07014275.1 ENSRNOG00000060602 ENSRNOT00000082202 3 1 1 80 14 7412056 7415104 TCTGAGCTGGAAGTAGAGC 59 7411994 7412012 ACTGCCTTTGGTTACTGTG 58 Novel Rattus norvegicus 81 AABR07014328.1 ENSRNOG00000057790 ENSRNOT00000081606 2 1 1 90 14 9785619 9785637 CTCCTTGACTCTAGCACGT 59 9783117 9785565 TTCTCTTCCAGGCTGTCAC 59 Novel Rattus norvegicus 81 AABR07014630.1 ENSRNOG00000052680 ENSRNOT00000085412 2 1 1 80 14 23971395 23972895 GAAGAGGAAGGTAATGACATGG 59 23972935 23972954 GTCCTTGTCTTATCTTGGGC 58 Novel Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 3 1 1 98 14 24842985 24877878 GTACTACATGTGCCCAGGT 59 24877938 24877958 GGTTTGAATGCTGCATATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013070.1 ENSRNOG00000054507 ENSRNOT00000083297 2 1 1 81 2 221230474 221237039 TGGCATAAGGAACTCCTGAC 60 221237081 221237101 GTTCTAGTTTGCCAGGATGAG 59 Novel Rattus norvegicus 81 AABR07013073.3 ENSRNOG00000060752 ENSRNOT00000084954 1 1 1 62 2 221339628 221339649 CGAGTTTCTTCATATGTTCTGC 58 221334947 221334965 CTGAAGACGGTAGACAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013073.3 ENSRNOG00000060752 ENSRNOT00000084954 2 1 1 63 2 221339628 221339649 CGAGTTTCTTCATATGTTCTGC 58 221334946 221334964 GCTGAAGACGGTAGACAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013488.2 ENSRNOG00000057646 ENSRNOT00000080711 2 1 1 89 2 239579752 239579772 GCACTTAAGGTTTCTGAACCG 60 239579822 239598229 GTCTCATTCCTCCTCACCTG 60 Novel Rattus norvegicus 81 AABR07013689.2 ENSRNOG00000059575 ENSRNOT00000092042 3 1 1 81 2 250430278 250431862 TCCAACTGTTACTCATGTTGC 59 250430217 250430238 GTCCATCATCTCGAATGATCAG 59 Novel Rattus norvegicus 81 AABR07013718.1 ENSRNOG00000054185 ENSRNOT00000084675 2 1 1 80 2 252869508 252872348 ACTCAAGCGGTCTCTAAACTC 60 252869448 252869468 CAAAGTTGTTTGATGTCCGGT 60 Novel Rattus norvegicus 81 AABR07013746.1 ENSRNOG00000059921 ENSRNOT00000082882 3 1 1 93 2 254228337 254228355 TCCAGTGCTCCAATATCGA 58 254228406 254249418 GACATCACTTCTATTACCTCATAGC 59 Novel Rattus norvegicus 81 AABR07013750.1 ENSRNOG00000052596 ENSRNOT00000091976 2 1 1 87 2 254549729 254549748 ATTCCTCTAATGAGGCACAC 57 254549798 254551321 TCAACTTGACCAGGTTCAG 57 Novel Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 3 1 1 63 11 43415652 43415672 TCTCCTGTAATGACCCTTCTC 59 43415701 43415719 AATACCTGGATCGAGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076775 2 1 4 88 7 115870358 115873153 AAACACTCCAGGCTATGCT 59 115870288 115870306 CTGGGCAATGGATGATTGG 59 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443 1 1 4 81 7 115868311 115873150 CACTCCAGATAACTTGGATGTG 59 115868251 115868272 CTTATTAACCACCATGTCCTCC 59 Novel Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 3 1 1 61 18 25364209 25364227 GATTCACAGGAGTCTGTGG 58 25364163 25364182 CTCCTTGAAAGGATTTCCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 2 1 1 73 14 86711660 86711679 GAACCTGGATGACTTAACGT 58 86711714 86711735 CATTTAGTTCTGACTGCATCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 1 1 1 60 8 72904226 72904244 ATTCCCTTCCCATGACCTC 59 72904270 72904288 ATTTGTGGTGAGAGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 2 1 1 67 X 57058435 57058453 ACAAGACTCGTTGGTCCAG 60 57058218 57058239 TTTCGTGTCCTTCTTTGTAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000034522 1 1 4 80 3 140156490 140156508 GAATGTTGCCAAGCAGGAC 60 140156552 140160349 CCTTGAACACAGTCTGTGC 59 Novel Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 2 1 1 80 15 43543619 43543638 GAATAGGAGATGGAGGCCAG 60 43543682 43543700 TTAGCATGCTAGCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 2 1 1 81 15 44329499 44329517 CAAAGGCCACAAGGTAACG 60 44329579 44329597 GAACTTGGTGTGCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061577.1 ENSRNOG00000061726 ENSRNOT00000077970 1 1 1 80 4 134398444 134398766 AAGAAGGAAGAAATGAGCAGAG 59 134398807 134398825 ACAAATCAGCGTGTAACCA 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057328 ENSRNOT00000088144 3 1 1 65 2 28606743 28606762 TACACGGAAGCTTAACATGG 58 28606790 28606808 AAATACGGACTGCCTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027511.1 ENSRNOG00000058793 ENSRNOT00000090457 3 1 1 85 17 34940782 34941456 TATTTGAAGGTGCCCTTGGA 59 34940716 34940734 CAGAACCACATGAACAGCA 58 Novel Rattus norvegicus 81 ENSRNOG00000059050 ENSRNOT00000088535 1 1 1 80 1 42968141 42968161 GACCTCATGAATGTCAAGCTG 59 42967655 42968095 ACCATTCATCCTGCACTCC 60 Novel Rattus norvegicus 81 AABR07028530.1 ENSRNOG00000047547 ENSRNOT00000072769 3 1 1 61 17 73695580 73695598 AAATGCCTCCATGAGATCC 57 73695623 73695641 TCCTTCCACCCTTGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059065 ENSRNOT00000091846 2 1 1 60 12 7026877 7026895 AGCTGACTCTTGCAATTCC 58 7026918 7026937 CCCATGACCACAGATTATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000080556 1 1 2 81 13 49006135 49006157 CTGTGAATCTGTCATGAAGAGAC 59 49006192 49010598 GATATTTACGGATGGATCTTCACTG 60 Novel Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 2 1 1 60 14 99672221 99672239 GACAACATCTGCTGTCACC 59 99672265 99672283 AGATTCCACCTCACACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 3 1 3 90 6 104467547 104467565 CAAGTGGACCCGAGATCTG 60 104467618 104475049 GAGGAGTAGCTTCACCAGTG 60 Novel Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 2 2 2 80 4 7150806 7150824 GATGTTCAAAGTGCTGCCA 59 7150866 7151220 CGGCTCTTCCAAATACTTGTG 60 Novel Rattus norvegicus 81 AC098511.1 ENSRNOG00000054297 ENSRNOT00000089425 1 1 1 80 7 139526458 139526476 CTGTGGAATGTTTGCTTGC 58 139523739 139526414 TATGGCATGTGTTGCTGTG 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000072059 1 1 4 81 5 171669376 171669398 GGAGTCTATGAAGATGAAGAGGA 59 171667121 171669335 ATCATTGCGTATGCCTTCG 59 Novel Rattus norvegicus 81 AC123253.2 ENSRNOG00000052774 ENSRNOT00000090011 3 1 1 80 12 7741183 7741206 AGATTTCACCTCACATGCGA 60 7741122 7741142 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052823 ENSRNOT00000091548 3 1 1 62 10 89277136 89277154 GGCTTATCCATTGCACTCC 59 89277180 89277198 TTGAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 1 2 2 89 18 14776136 14857566 GCCTGGATGTTCAAATTGGG 60 14857618 14857636 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 1 2 4 114 X 73466671 73467008 TCATGAAGGGTTTGATGGAC 58 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 2 1 1 60 4 103403930 103403951 GATTCCTGTTGCTATGGTTTCC 60 103403779 103403798 GATGGAGACTGGGTCATCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045405.1 ENSRNOG00000059487 ENSRNOT00000077765 2 1 1 121 20 46519519 46519550 GCTGTTAACCATGCAGAGG 59 46519635 46519653 TAGGAAGATCGGCGTACAC 59 Novel Rattus norvegicus 81 AABR07043155.1 ENSRNOG00000045527 ENSRNOT00000054527 1 1 1 60 19 24038240 24038258 GGCTGTCTTGCTTAATGCT 59 24038198 24038216 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043155.1 ENSRNOG00000045527 ENSRNOT00000054527 3 1 1 61 19 24038241 24038259 AGGCTGTCTTGCTTAATGC 59 24038198 24038216 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000076382 1 1 2 80 10 11878988 11879426 TCGAATAAGAGAAGATGCAGTG 58 11879465 11879485 CCTCCCTCATAGATGTTAGGT 58 Novel Rattus norvegicus 81 AABR07041604.1 ENSRNOG00000038118 ENSRNOT00000058004 1 1 1 60 X 134618251 134618271 ATGTTGCAGTATGACTCTACC 58 134618293 134618311 TCCCATTCTCAGCCTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047044.1 ENSRNOG00000036484 ENSRNOT00000054592 2 1 1 60 5 17059744 17059763 GCAGGTAAGAATCAACCTGG 59 17059703 17059721 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017198.2 ENSRNOG00000056859 ENSRNOT00000077333 2 1 1 60 15 17330206 17330225 AGTCTGGAATGGGATTTGGA 59 17330248 17330266 CAACATCAGCATCACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052341 ENSRNOT00000084070 2 1 1 60 19 56688532 56688555 CGATACAGAGAAGATTAGTATGGC 59 56688574 56688592 AACGCTTTACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052312 ENSRNOT00000081212 1 1 1 60 18 2024480 2024498 AGCAGCCTTTGTGGTAGAG 60 2024522 2024540 AAAGCTCCCTTAGGGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.3 ENSRNOG00000053486 ENSRNOT00000090713 2 1 1 86 4 114764490 114764655 ATTCAGCCTGAGATGCTGG 60 114764705 114764723 CTGGTTCAGGAGGTCTCTG 59 Novel Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 2 1 1 102 6 139660634 139660652 CAGCTTGGGTTTCCTTGTC 59 139660440 139660458 GAGTTTCAGGGACCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 2 2 3 80 X 74012057 74014923 AAGACTGCTGGATACAGCA 59 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 3 1 2 88 6 139486789 139486807 CAGCTTGGCTTTCCTTGTC 60 139486969 139486987 TTCCAGGCTGTACTAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 1 1 1 86 9 110055970 110055989 GGGCTAAAGGGAAATTTGGA 58 110055902 110055920 GTGTCAGAAAGGGAAAGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 1 1 1 83 1 222525815 222525833 TTGAGTCTTGGGTTCCAGG 59 222525745 222525763 GAGAAGCCCTTGGTCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 1 1 1 76 18 8503638 8503656 AATCTGACCTGGCAAGAGG 59 8497637 8497655 ATGTTTGTTCCTCAGCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000087589 1 1 2 80 14 61664886 61668115 GCAATTGGAAGAAAGGTGG 57 61668157 61668177 GTCAATAACAAACACCACACC 58 Novel Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453 1 1 2 80 10 93163806 93163827 CCTGGAGAAACTTCACATAGAG 58 93163868 93179029 TTTCCAGTCTCGTCTACGG 59 Novel Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 2 1 1 61 15 29664803 29664822 ACAGTAGCCTGGAAACTCAG 60 29666864 29666882 CCTCTTGAGGACACTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 1 1 1 60 18 67748212 67748232 GTCAAATATGCCTGAAACCTG 58 67695157 67695175 CGCATAGTTTCCTCTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 3 1 1 105 15 103583564 103583582 ACATGTTGGACATACTCGG 57 103576093 103576112 GGCGAGTTCTGTGTATAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 1 1 1 60 13 35887273 35887291 CCAAAGACATCACCAGCAG 59 35886814 35886834 CAAGCTGTGTTCAGAGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 2 1 1 60 13 35887274 35887292 TCCAAAGACATCACCAGCA 59 35886815 35886834 AAGCTGTGTTCAGAGAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 3 1 1 62 3 30111753 30111771 TGTGAATCCTGCTCTCAGC 60 30111921 30111939 TGTTTCTGAAGCCAGTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 3 1 1 61 6 110258847 110258867 GATGGTTGGAGAACATTCTGG 59 110258294 110258313 GAAGGACAGCATCAGTTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 1 1 1 74 11 35609379 35609397 AGGAAAGGAACAAGTGGAG 57 35611091 35611109 GTCAGTGTTTGCTCTTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 2 1 1 75 11 35609379 35609397 AGGAAAGGAACAAGTGGAG 57 35611092 35611110 AGTCAGTGTTTGCTCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 3 1 1 61 13 69628280 69628298 TGCTCTGTTACTGCCTCTC 59 69628529 69628548 GTGACAGGTTATTGCAACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 1 1 1 60 12 22339028 22339047 TGGTAAAGGTGTCTTCACCC 60 22339407 22339426 GTTCTGGGTACAGCTATTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 1 1 1 60 12 22528087 22528107 AAAGAAAGCGACCATGAACTG 60 22512562 22512580 CTCAACTTCTGTTGACCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 1 1 1 64 12 28025307 28025325 CCCTGTGTTCAGAGATGGG 60 28024967 28024985 GATTTAGAAGGACTGCGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 1 1 1 60 12 33212886 33212905 CCCAGGAGTGAAGATCTCTG 59 33209989 33210008 CTGACCTGTCTCTGGATAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 1 1 1 60 9 49134043 49134061 ACATCAAGCCACAACAGGA 60 49134993 49135011 CTGTCACGAAGCTGTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 3 1 1 60 12 49034079 49034097 AGCCAAGAAGGAGAAGCAG 60 49034971 49034989 CTGAATTCGAAGCTGAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 1 1 1 60 9 106784506 106784526 CAGAATTCATTATGGCCACAC 58 106734734 106734752 ACCACCTCCTTGAAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 2 1 1 112 7 28372075 28372094 CTTAAGCTAACGGAAGTGGG 58 28372330 28372350 CAAGATCTGGAGGTATTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 2 2 3 87 17 20998250 20998269 AAGCTCTCCCTATTTCTGGT 58 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 2 2 2 91 17 21293251 21294174 AGAACAATACACCACTTGGG 58 21293179 21293198 GGAGACCTTAGGTATTGGTG 57 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 1 1 1 80 7 62236167 62236185 TCTTCCTTCCTCATGGACG 59 62236992 62237010 CTTCAGTCTTGAGCTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524 1 1 2 89 7 75855167 75855185 AATGGTGAGGTAGTGACCC 59 75855237 75858274 CTGACAGAGCTTCTGATGTC 58 Novel Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 3 1 1 94 X 139471775 139471796 CAGGCATTTCTATTCCAAAGAC 58 139473980 139474004 GACTTACCTCTGACTTCTTAAACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 3 1 1 72 17 72120206 72120225 TGCAGTAAATACGCAAACAC 57 72121761 72121779 CAGCTAATTAAGGCACGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 3 2 2 84 20 41022101 41023151 GTTGACTGGTAGATCCCAGG 60 41022036 41022054 GTCATCTTCTCCTAGCGCT 59 Novel Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 2 1 1 60 2 63732541 63732559 GGCATGAAACCCTGATGAG 59 63734649 63734669 TTGTCAGTAAAGGATTGCGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 2 1 2 60 7 134985950 134985968 TTAAGGCCGAACAAAGACC 58 134988445 134988464 TTCTATCACAACGGGAAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 3 1 1 70 7 135124930 135124949 TAGCCGCTTTATTACTCTGG 57 135146088 135146107 AGGAATAATTGTGATGCCGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 1 1 1 60 8 128962589 128962610 TCTGAAGAGCTTTGAGAATCAC 59 128964260 128964281 CTTTCTTGCTGTAAGGAAGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 1 1 1 80 7 143620336 143620355 ATCTCACCTCAAATCTGCAG 58 143625186 143625204 TCTCTTCCTGCCTTTCGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009 1 1 2 80 2 204040888 204040906 CTCGTGCAGACAACATCTG 59 204040950 204042857 AGAAGAGGCCATTCTGTGG 59 Novel Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 3 2 2 80 2 254033893 254034510 TTGATCAGGAACTGACTACCT 58 254034552 254034570 TACTTAACTCTCGCTTCGC 57 Novel Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332 1 1 2 80 2 254034697 254038815 ACGCCAAACTTAAGGAACAG 59 254038858 254038876 TGCACTGTAGCTGTCTGTC 60 Novel Rattus norvegicus 81 Mt-co1 ENSRNOG00000034234 ENSRNOT00000050156 2 1 1 60 MT 5881 5900 TCCGTACTAATTACAGCCGT 59 5921 5941 TGATACCTGCTGCTAATACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa4l ENSRNOG00000010819 ENSRNOT00000015474 1 1 1 80 2 127632193 127634608 AGCTAAGAGCCAGATAGTCAC 59 127634648 127634668 GGATCATCAAATGATCGTCCA 58 NA Rattus norvegicus 81 LOC102552128 ENSRNOG00000050724 ENSRNOT00000056486 2 1 1 166 2 193007795 193007813 TGTGTCTTCCTGCTGTAGC 60 193007647 193007666 TACAGCATCCAGAGCTATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crct1 ENSRNOG00000009574 ENSRNOT00000012684 2 1 1 68 2 193330653 193330671 CCAAAGGGTCTTCCCAGAG 60 193330603 193330621 AAGATGAGGAGGACGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC109340 ENSRNOG00000046858 ENSRNOT00000075521 2 1 1 60 X 106488354 106488372 ACGGTCTCAAGGGAAACAG 60 106488395 106488414 GCAATCGGTATAACTTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nphp4 ENSRNOG00000011967 ENSRNOT00000066623 3 1 1 80 5 169688661 169689347 CTCTTCTAAGAGCAGCTCTG 58 169689389 169689408 GATGGGTGATTGACCATCTC 58 NA Rattus norvegicus 81 AABR07040792.1 ENSRNOG00000037611 ENSRNOT00000043861 2 1 1 60 X 110343154 110343174 ATGAATACGAAGAGGATGAGG 57 110343193 110343214 CGATCTTCATCGTTATCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dffb ENSRNOG00000025030 ENSRNOT00000032825 3 1 1 80 5 171259906 171259924 CGACCTTCTGCATCATGTG 59 171258005 171259864 GACTCCAAACCTTCAAACCAG 60 NA Rattus norvegicus 81 Pnma5 ENSRNOG00000058423 ENSRNOT00000085250 1 1 1 60 X 153039339 153039362 CTCTATTAGATGACTGGTGTAAGG 58 153039302 153039320 ACAATGAGTACAGCCTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562962 ENSRNOG00000039192 ENSRNOT00000045023 3 1 1 60 X 112555731 112555749 GTCAACTTCTTGGTGTCCT 57 112555773 112555791 TGATGTACAGAGCCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680190 ENSRNOG00000047829 ENSRNOT00000051551 1 1 1 60 X 43781460 43781480 ACTATGAAGACCCTGTGATCC 59 43781420 43781438 CAGGTTCTCCATATGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufm1 ENSRNOG00000038176 ENSRNOT00000058116 3 1 1 102 2 143101629 143104204 TACCGTACAAAGTCCTCAGC 60 143100738 143100757 ATAATCGCACTTGTAGCAGC 59 NA Rattus norvegicus 81 Olr1687 ENSRNOG00000046708 ENSRNOT00000074145 1 1 1 60 20 650343 650362 CACACTCTTCTATGGCTCAG 58 650384 650403 TGGTGAATGGCTAGATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 1 2 2 81 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395976 257395996 ATGTCAGTGACTGACATAGGT 59 NA Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 3 2 2 85 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395972 257395990 CACGATGTCAGTGACTGAC 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210,ENSRNOT00000080331,ENSRNOT00000079802 1 4 5 80 X 22272424 22272443 AGTTCAGTCACCACATCTGG 60 22272483 22277404 CAGAGACTTTACCTGTTTGGAG 59 NA Rattus norvegicus 81 Vom2r47 ENSRNOG00000028345 ENSRNOT00000057657 2 1 1 90 2 155378944 155381576 TTACATGAGTCAGGTGGGC 59 155378872 155378890 ATCACTGGGTATTGTGCGA 59 NA Rattus norvegicus 81 LOC684822 ENSRNOG00000033199 ENSRNOT00000040365 2 1 1 60 8 3272029 3272047 TGCGTATTGAACCCTTCTC 58 3271987 3272006 GAATCCTGTGGCTTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hyls1 ENSRNOG00000012980 ENSRNOT00000017330 1 1 1 60 8 36763744 36763762 CGAGGCAAGATAGACAGAG 57 36763702 36763720 GCATTGAATCCCAATCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd19 ENSRNOG00000042163 ENSRNOT00000067675 1 1 1 85 5 135993010 135993145 GATACTCTGTGCTGGAGGT 59 135991250 135991268 CTTCACCACAAACTCCAGG 58 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000081757 2 1 2 91 15 37402349 37408392 AACGAGACTCAGAAGGAGC 59 37402276 37402294 CTTCCCTATGCTGGTCGAG 60 NA InUTR Rattus norvegicus 81 LOC100910954 ENSRNOG00000046657 ENSRNOT00000072449 1 1 1 103 2 49383160 49384084 ATTAACAGCCAAGTCTGTGAC 59 49383077 49383095 GTGTGGAATCAACCCACAG 59 NA Rattus norvegicus 81 Rcan1 ENSRNOG00000001979 ENSRNOT00000002715 1 1 1 107 11 32544254 32545578 ACTTTGCCCAGACTTTACAC 59 32544166 32544184 CTTGTTTCCAGCCAACAGG 59 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 3 2 2 80 20 5548720 5548742 GGATGAAGACTCCATTATCAAGC 59 5548781 5549002 CCAGACGATGTTGTTACCTC 58 NA Rattus norvegicus 81 Crybg3 ENSRNOG00000001687 ENSRNOT00000002292 2 1 1 80 11 42995435 42997811 GGATAAAGAGTGGCTTATGGA 57 42997852 42997871 GGATCTCATTAGGCACAAGG 58 NA Rattus norvegicus 81 Ing1 ENSRNOG00000014520 ENSRNOT00000019454 1 1 1 60 16 83277780 83277798 CAGCGAAACAACGAGAACC 60 83277738 83277756 AGGTGATGTCGTCATGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk1b ENSRNOG00000032856 ENSRNOT00000052200 1 1 1 60 11 87240493 87240511 CCGCTCTATTGTCAAGACC 58 87240451 87240469 GACAATGTAGACCTTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxl2 ENSRNOG00000017190 ENSRNOT00000023091 3 1 1 60 8 107194753 107194771 AGAAGAGGCTCACTCTGTC 58 107194794 107194813 TCGTAGAACGGGAACTTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hlcs ENSRNOG00000001686 ENSRNOT00000002291 2 1 1 80 11 34361541 34362980 TTATATCCTCATTGGCTGTGG 58 34361481 34361500 TTGTGTTCTTCGATGAGGTC 58 NA Rattus norvegicus 81 Prrg3 ENSRNOG00000047013 ENSRNOT00000071232 3 1 1 91 1 69286842 69287503 CATCATGGCTGTGTTCCTG 59 69286769 69286787 CTTGACGTAGCTCCTCCAG 60 NA InUTR Rattus norvegicus 81 AABR07033817.1 ENSRNOG00000046133 ENSRNOT00000047347 3 1 1 107 11 39443173 39448311 GGGTCCATAGCGATTAGGA 58 39443084 39443103 CTTCCTGTTGTCTTCATCCC 58 NA Rattus norvegicus 81 RGD1561590 ENSRNOG00000010732 ENSRNOT00000014397 3 1 1 81 15 38072822 38072840 CAGAAGCCAGAAAGAAGGG 58 38072882 38073237 TCTTTAACTCGATATCCAGGTC 57 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000002221 2 1 2 84 11 36880196 36910233 AGATAATGGCAAAGTGCTCAC 59 36910279 36910297 TTCTTAGAGACCGAGCAGG 59 NA Rattus norvegicus 81 RGD1563302 ENSRNOG00000038917 ENSRNOT00000059490 3 1 1 80 15 39605632 39605650 GAGTGCCAAAGGATAGTGG 58 39598494 39605588 ATTTCCCTGGTACCCTGAC 59 NA Rattus norvegicus 81 RGD1560112 ENSRNOG00000050155 ENSRNOT00000074943 2 1 1 80 8 41554209 41554676 CTCACTTATAACCTATAGAGATGGC 58 41554713 41554732 TCAACAGTCCCTTTAAAGCA 57 NA Rattus norvegicus 81 Olr51 ENSRNOG00000015424 ENSRNOT00000020678 3 1 1 60 1 168005415 168005435 TGTCTCCTTTATGTAATCGCC 58 168005457 168005475 CACGAAGGATCACCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir1298 ENSRNOG00000041538 ENSRNOT00000063291 3 1 1 60 X 118190266 118190286 CAGATGTATCCAAGTACCCTG 58 118190308 118190326 AAGTTCAATCAGTTGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 2 2 2 83 2 30181799 30181822 CCTAAGATAACTGTCATAATCGGG 59 30181373 30181763 GAGAAATCTTGGACTATATGCTCTG 59 NA Rattus norvegicus 81 Zcchc13 ENSRNOG00000002923 ENSRNOT00000003899 3 1 1 60 X 74497272 74497291 AAAGTTGCTTCAAGTGTGGA 58 74497313 74497332 GTTCCTCCCTTAGGACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209,ENSRNOT00000080681 1 2 2 80 11 38383315 38385764 AAGGAAGCTCAGACTCTACAG 59 38383255 38383273 TAGTTCATGAGCCCTTGGA 58 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 2 2 2 82 20 5533011 5533029 TTCCAGGATCAGTCTCTGC 59 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 Ctag2 ENSRNOG00000012560 ENSRNOT00000016754 2 1 1 81 X 148422450 148422634 GAATGACACTATTCTCACTGTTAGG 59 148422669 148422691 GTGGTCTAGGAAGTTATTGATGG 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300,ENSRNOT00000015784 3 2 2 80 1 161988756 161995716 GATCTCATGCAGGTCATGGA 60 161995756 161995777 CAGTTCAACATCTTCAGGACAG 59 NA Rattus norvegicus 81 E2f3 ENSRNOG00000029273 ENSRNOT00000050261 1 1 1 80 17 36400345 36400363 CTACGACATCACCAACGTG 59 36400404 36404695 TAACATAAGATCCACTGGACGT 59 NA Rattus norvegicus 81 LOC100909913 ENSRNOG00000002960 ENSRNOT00000003984 2 1 1 81 X 6806713 6814394 AATGTAGCTCAAAGATGGTGC 59 6814437 6814455 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 2 3 3 80 2 184901906 184903595 TACATACAGGACTCTGCTGG 59 184903638 184903656 AGAAAGCCAAGAGAAGCCT 59 NA Rattus norvegicus 81 LOC100911361 ENSRNOG00000051193 ENSRNOT00000076198 3 1 1 60 2 121129727 121129747 GGTGGTGGGAACTATAATGAC 58 121129687 121129708 GTCCATGATTTGATTGTTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_17_0793.1 ENSRNOG00000051034 ENSRNOT00000076151 2 1 1 60 17 77568377 77568397 TCTGATGTCCAAAGAGGAGTG 60 77568418 77568437 ATGAACTCATCCTAGGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim1 ENSRNOG00000015735 ENSRNOT00000021070 1 1 1 60 3 161290470 161290490 AGCTAGATGCCTTCAACTACC 60 161290511 161290530 TCAGGGAAATGAGCAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim1 ENSRNOG00000015735 ENSRNOT00000021070 2 1 1 60 3 161290471 161290490 GCTAGATGCCTTCAACTACC 58 161290511 161290531 ATCAGGGAAATGAGCAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpzl1 ENSRNOG00000003248 ENSRNOT00000004376 1 1 1 80 13 83815973 83816943 GGAAATAGACAACCTGCTGG 59 83815912 83815930 AGTAGAGTGAGCCCAAGGA 60 NA Rattus norvegicus 81 AABR07013931.2 ENSRNOG00000053997 ENSRNOT00000082326 2 1 1 61 2 264180150 264180168 AATGGACATCCAAGCACAG 58 264180192 264180211 GGTTGTTCTTCTCTGGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554637 ENSRNOG00000049855 ENSRNOT00000044960 1 1 1 110 4 70743615 70744006 CTTCGGTGTCAATGATCCTG 59 70743524 70743543 GCACAGACCATGTTATTGGT 59 NA Rattus norvegicus 81 Sepw1 ENSRNOG00000013548 ENSRNOT00000018559 2 1 1 103 1 77533617 77533754 TAAGCCCAAGTATCTCCAGC 59 77533352 77533370 CTTCAAAGAACCCGGTGAC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000000158 2 1 6 91 17 84487043 84487061 GAGGTTTGCAAGATGGCTC 59 84485862 84486888 ATCAGGGATCTGCTGACTG 59 NA Rattus norvegicus 81 Fcrl1 ENSRNOG00000034230 ENSRNOT00000052347 1 1 1 80 2 186723638 186723660 TCTCCTCTTCTTTCCTTCCA 58 186723700 186723721 GTCTTCATAGTCCACATAAACG 57 NA Rattus norvegicus 81 Lmbrd2 ENSRNOG00000054751 ENSRNOT00000077646 2 1 1 80 2 58555432 58556283 CGTTTGCATTTAGAATGGAACC 59 58556322 58556342 TAACACGAGGAGAAACAGACC 60 NA Rattus norvegicus 81 Sc5d ENSRNOG00000008305 ENSRNOT00000011284 1 1 1 80 8 46530082 46531592 GAGACTTTCCAAATGGCTGG 59 46530021 46530041 TCCAGTAGATCAACATGTCGG 60 NA Rattus norvegicus 81 Ttc24 ENSRNOG00000028765 ENSRNOT00000050476 2 1 1 80 2 187431164 187431184 AGAACATCTTCCATCTGGAGG 59 187430849 187431123 AACAAGGCACTATTGTTGGG 59 NA Rattus norvegicus 81 LOC100363782 ENSRNOG00000050510 ENSRNOT00000042711 1 1 1 60 1 220482417 220482437 AACTACAGATTTGGGACACAG 58 220482377 220482396 TAGTAGCTGGAAGTGATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC288978 ENSRNOG00000045570 ENSRNOT00000071437 3 1 1 81 13 36186637 36186657 AGCCTGTGGTATATCATCGAG 59 36186700 36196895 CTCGAAGGGACATCTTGCT 60 NA Rattus norvegicus 81 Ctsk ENSRNOG00000021155 ENSRNOT00000028730 3 1 1 80 2 196660055 196660073 GCCTTCCAATATGTGCAGC 60 196660115 196664028 CATACAACTTTCATCCTGCCC 59 NA Rattus norvegicus 81 Rhod ENSRNOG00000019220 ENSRNOT00000026092 3 1 1 89 1 219674982 219675001 GGTGTTTGAGCGCTATAACG 60 219674274 219674930 TCATAGTCATCTTGCCCGG 59 NA Rattus norvegicus 81 LOC102554121 ENSRNOG00000048837 ENSRNOT00000071358 3 1 1 80 9 105253134 105262331 CTTCGTGCTCTTTGGTATCTG 59 105253074 105253092 CAAAGCCAAGGACTCTGTG 59 NA Rattus norvegicus 81 AABR07036649.1 ENSRNOG00000046427 ENSRNOT00000071323 1 1 1 60 12 52664652 52664671 CTATCGCCAAGTTGCTTCTG 59 52664692 52664712 CGGCACCTTAAAGTAGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1314 ENSRNOG00000006035 ENSRNOT00000007901 1 1 1 60 8 43443448 43443468 GAGACTCTACTCTTTGTGGTG 58 43443408 43443427 GTGAATTTCCAAGCAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1314 ENSRNOG00000006035 ENSRNOT00000007901 2 1 1 60 8 43442888 43442908 TCTCTTCAGTGTTTGTGTCTC 58 43442848 43442867 TGAACGGATTCTCAGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph3 ENSRNOG00000018762 ENSRNOT00000067916 1 1 1 80 1 47443533 47443551 TCTCCCGTCTGTCTTTGAC 59 47441265 47443492 AGGAATCCGACCTCAATATCTC 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559,ENSRNOT00000022980 2 3 3 81 17 10603298 10603438 CTGCTCAAGTGTCAGTCAG 58 10603235 10603253 AACTGGACAACAGGAACTG 58 NA Rattus norvegicus 81 Rpia ENSRNOG00000005576 ENSRNOT00000007927 3 1 1 85 4 98585712 98587265 CAGCGAATAGCTGAAAGAGTG 60 98579142 98579160 TGTAGGATAAGCTGCCTGG 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000080931,ENSRNOT00000008936 1 2 2 80 4 17333080 17333098 CCCACGATCACTACAAGCA 60 17318914 17333038 TCATCCGTCTTTACCTCTTCC 59 NA Rattus norvegicus 81 Cybb ENSRNOG00000003622 ENSRNOT00000038994 3 1 1 80 X 14578362 14580257 CATCTTTGTCATTCTGGTGTG 58 14580297 14580317 TTAGGCTCATCGTCATAAACC 58 NA Rattus norvegicus 81 Zmat2 ENSRNOG00000016016 ENSRNOT00000021516 3 1 1 80 18 29642307 29642326 ACTACTGCAATGTCTGTGAC 58 29642368 29642796 TTCGCTGATGTTTCTTTCCA 58 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010,ENSRNOT00000087898 3 2 2 80 X 40301243 40303354 CTTCACTACACAGTGAGCA 57 40303398 40303416 TGTCTCCACAATTACTGGC 58 NA Rattus norvegicus 81 Pip5k1b ENSRNOG00000015232 ENSRNOT00000068645 2 1 1 83 1 242233787 242244906 AATTCAAGCTCTGAAGGCC 58 242233722 242233740 GACAGAATCTCCTGGGAGG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849,ENSRNOT00000084023 1 2 2 80 2 196030109 196031072 CAACATTCGATTCATGAACCAC 59 196031110 196031131 CAGATAGTATGACCATCCACCT 59 NA Rattus norvegicus 81 Zfp282 ENSRNOG00000026981 ENSRNOT00000037248 2 1 1 90 4 77567756 77569393 AGAATCCATCACTGACTCCC 59 77569445 77569464 ATCCTGCTGATCCCATACAC 59 NA Rattus norvegicus 81 Tbc1d10a ENSRNOG00000006394 ENSRNOT00000008788 3 1 1 80 14 84443949 84443968 CAGTATGAAACCATCGAGCA 58 84444010 84444575 CTCTATCACCTCCTGAACCA 58 NA Rattus norvegicus 81 Senp7 ENSRNOG00000001616 ENSRNOT00000044177 2 1 1 80 11 46885771 46885794 CCATGTATTCTCATACTAGACTCC 58 46884839 46885733 TACCTCCAAATACTCTCGCA 58 NA Rattus norvegicus 81 St14 ENSRNOG00000005903 ENSRNOT00000009139 3 1 1 80 8 32241159 32241507 AAGAAGGAGGAACTGGAGC 59 32241097 32241115 GCAAGAGTTCCTCACAGGT 60 NA Rattus norvegicus 81 Serpini1 ENSRNOG00000010248 ENSRNOT00000013904 2 1 1 80 2 174107439 174107459 CTCCAAAGCTGTTCACAAGTC 60 174107500 174109767 ATTGCAATCATTCCTGAGGC 59 NA Rattus norvegicus 81 Insig2 ENSRNOG00000002478 ENSRNOT00000003391 1 1 1 80 13 37279647 37279665 ACCAGATGTGATCACCAGC 60 37271798 37279603 AGTCCAATCACAGCTGAGG 59 NA Rattus norvegicus 81 Cldn3 ENSRNOG00000046007 ENSRNOT00000075280 2 1 1 66 12 21832100 21832118 TCTATCCTACTGGCAGCCT 60 21832052 21832070 GTACGCAGTTGGTACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC109737.1 ENSRNOG00000014312 ENSRNOT00000064892 1 1 1 81 4 70829203 70829222 GACAACTGGTCAGAGGACTC 60 70829266 70829782 TGATTCCACAGTCTGCTCG 60 NA Rattus norvegicus 81 Zswim5 ENSRNOG00000018160 ENSRNOT00000068267 1 1 1 80 5 135829623 135837496 ACAGCCCAGACTCTTTATCC 59 135837537 135837557 TGTCTTGCCAATGTAACTCAC 59 NA Rattus norvegicus 81 Tmem177 ENSRNOG00000025484 ENSRNOT00000039074 2 1 1 80 13 35931229 35933228 AAGGTTGCTACAGAGTTGCT 60 35931168 35931186 CCATCCAGTCAGACACCTC 60 NA InUTR Rattus norvegicus 81 Vav1 ENSRNOG00000050430 ENSRNOT00000073294 1 1 1 80 9 9645389 9645407 GAGAATGAGGAGGCAGAGG 59 9645239 9645345 TGTCATCTTGGGAGGTGTG 59 NA Rattus norvegicus 81 Taar6 ENSRNOG00000016089 ENSRNOT00000021529 3 1 1 60 1 22536202 22536221 GGTAGTAACTCGTCTCCTCC 59 22536244 22536262 AAGACCCATTCACGTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tapbp ENSRNOG00000029500 ENSRNOT00000044975 3 1 1 62 20 5471197 5475187 CATGGCAACAGTGGTACTG 59 5471153 5471171 TTTCCCAGATGGATCCGAG 59 NA DesignRelaxed Rattus norvegicus 81 Bmp10 ENSRNOG00000009316 ENSRNOT00000012365 1 1 1 80 4 119225222 119229607 GGAGCTTCAAGAATGAAGATCTG 60 119229647 119229665 ACACGTTGAAGAGGAGAGG 59 NA Rattus norvegicus 81 RGD1562161 ENSRNOG00000005135 ENSRNOT00000006867 3 1 1 80 X 38330562 38331050 TCAGAAGAGGTATCCAGAGG 58 38330501 38330519 TCATACCTTGCTGCATCTG 58 NA Rattus norvegicus 81 LOC684107 ENSRNOG00000047649 ENSRNOT00000074999 1 1 1 80 17 38927628 38928238 TACTCAGCAAGGTTGATCCTC 60 38928277 38928298 CAGTTGTCTTCAAGGATTCCAG 59 NA Rattus norvegicus 81 Farsb ENSRNOG00000014119 ENSRNOT00000019685 1 1 1 80 9 84361725 84361995 GTTGGAATCAAAGAGACTCCT 58 84361665 84361684 GCCATCACCTATGACTTCTG 58 NA Rattus norvegicus 81 Tap2 ENSRNOG00000046031 ENSRNOT00000074261 2 1 1 83 20 5208904 5210763 TATTCTCTGTTGGGAGCTCC 59 5208840 5208859 GTATGCGAAGGTTGATCCTG 59 NA Rattus norvegicus 81 Ippk ENSRNOG00000015631 ENSRNOT00000021022 2 1 1 80 17 15630233 15631850 AGTGTGAAAGACCAGAGTCC 59 15630172 15630190 TGGTCAAATTGGGAAGGCA 60 NA Rattus norvegicus 81 Ippk ENSRNOG00000015631 ENSRNOT00000021022 3 1 1 80 17 15622350 15623632 GACCTCTACTCAGGAAATAAGC 58 15622291 15622311 TATCCTAAGGTTATTCTGCGC 58 NA Rattus norvegicus 81 Sh2d1b ENSRNOG00000031599 ENSRNOT00000048692 2 1 1 94 13 88617068 88621062 CAGGATACAGACTGAGGCTG 60 88621119 88621137 CCACCAGTCCTTGATCTGG 60 NA Rattus norvegicus 81 RGD1559904 ENSRNOG00000014664 ENSRNOT00000061385 3 1 1 80 5 25113277 25115412 CAGATCTGGATTTGGTAAAGGT 58 25115453 25115471 CCAATTCTGAGTGCAGGTC 59 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002943,ENSRNOT00000002946 2 2 2 95 14 6931924 6932095 CAGCACAGAATGAGTTGCA 59 6931847 6931865 TAGAGTGTACCTGCCTTCC 58 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 3 1 3 161 4 78378380 78382294 GTGCACTCAGAAGAGAATGG 59 78383697 78383715 GTTCCTCAAAGCCATGGTC 59 NA InUTR Rattus norvegicus 81 Tdrd6 ENSRNOG00000025693 ENSRNOT00000038239 1 1 1 81 9 19923736 19923754 TATTGGCACCCTTGTTCTC 57 19923799 19925804 TTCTGTAGCTCAACTGCTG 58 NA Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 1 2 2 80 17 39160774 39161328 GCCAAGAAGGTTAAACATGGA 59 39161368 39161388 ATTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Mir764 ENSRNOG00000040427 ENSRNOT00000062180 2 1 1 60 X 118123298 118123317 ATGCCTACACATACATGGAG 57 118123338 118123358 CCAACGAAATCAATCATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC111616.1 ENSRNOG00000055384 ENSRNOT00000082821 3 1 1 80 17 39272189 39272920 TCAACAGGACTCAGACTAAGG 59 39272129 39272149 ATGACTGCAAGTCTTTGAGTC 59 NA Rattus norvegicus 81 Mir449a ENSRNOG00000035622 ENSRNOT00000053745 3 1 1 60 2 44897614 44897633 GTTGGCAGTGTATTGTTAGC 58 44897656 44897674 AGCAGTTGCATGTTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000029244 3 1 2 84 1 144601247 144601267 CTTAAGCCCTAAGGAGAAGGA 59 144596262 144601201 ATAATCTGACCCGCAGGTG 60 NA InUTR Rattus norvegicus 81 Sall1 ENSRNOG00000013907 ENSRNOT00000018629 1 1 1 85 19 23402243 23402262 AGAGAACTCACACTGGAGAG 59 23402309 23403442 CATGTGGACCTTCAGATTGC 59 NA Rattus norvegicus 81 Ankef1 ENSRNOG00000005792 ENSRNOT00000007893 1 1 1 80 3 129512313 129513386 TGCTATCAACACATCCACAG 58 129513427 129513447 AATATGCCTCGAACTAGTTCC 58 NA Rattus norvegicus 81 Pdxk ENSRNOG00000049937 ENSRNOT00000001589 2 1 1 81 20 10946889 10948420 AAGGCTCCATGTACGTTCC 60 10948465 10948483 TTGGGAGTGATGATGTCGG 60 NA Rattus norvegicus 81 RGD1308706 ENSRNOG00000017090 ENSRNOT00000023169 2 1 1 97 19 22699950 22705965 ACCAACAGATTCCTGTTGC 58 22706026 22706044 CGGTGGTGATTTCTCTGAG 58 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 3 2 2 83 9 85483678 85487677 GAGAAGAGGCTCCTCAGTG 59 85483613 85483634 CCCACATCTGCTTTATATTCCA 58 NA Rattus norvegicus 81 Nat8l ENSRNOG00000049351 ENSRNOT00000074734 2 1 1 86 14 82046614 82046632 GATTCTGGCCTACCTGGAG 59 82044350 82046564 CAGAAACAGGAACCAGGTG 58 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000086260 2 1 3 80 3 156699458 156707481 GAATCAAGGGTGAGAAAGACTG 59 156707520 156707540 ACTGATTTCGGATCTTGTCCA 60 NA Rattus norvegicus 81 Cstb ENSRNOG00000001201 ENSRNOT00000001593 1 1 1 80 20 10966663 10967169 TTCTTCATCAAGGTTGATGTCG 59 10966604 10966622 AGGCTTGTTCTCATGAGGG 59 NA Rattus norvegicus 81 Prl2a1 ENSRNOG00000016463 ENSRNOT00000022093 3 1 1 80 17 38901748 38902902 TCAGACACATCCCATAACCC 59 38901687 38901706 TTCACTAGGTCGTTCAGAGG 59 NA Rattus norvegicus 81 Ndufaf6 ENSRNOG00000040040 ENSRNOT00000061569 2 1 1 80 5 24305482 24305501 AGAGCAACTCCCTATCACAG 59 24303517 24305441 TTCTTGTGAAACACCATGCTG 60 NA Rattus norvegicus 81 LOC100910672 ENSRNOG00000049310 ENSRNOT00000064455 2 1 1 60 2 115092582 115092601 TTGCTGTTTCAGAATGTCAC 57 115092623 115092642 GATATAGCCACATAGCGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362110 ENSRNOG00000030481 ENSRNOT00000046719 2 1 1 80 13 41808379 41808397 TGTCTCCATCCCACATAGC 59 41808441 41817013 CCAGCTCTCCAGACTACTG 59 NA Rattus norvegicus 81 Ubqln3 ENSRNOG00000023833 ENSRNOT00000032587 1 1 1 108 1 169333743 169334041 CACAGCAGATTGCTGTGTC 60 169333653 169333671 CTGGGAATCCTGTACTGGC 60 NA InUTR Rattus norvegicus 81 Morc1 ENSRNOG00000032101 ENSRNOT00000046330 2 1 1 80 11 55017874 55017895 CAAAGAAGGAAGAGACCATGAC 59 55015423 55017835 GAACTACAACCTCAGTGAGAC 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 3 2 2 81 17 38996322 38998090 CGAATGACCTCGTTTGAAGAG 59 38998132 38998151 TCACTAGATGTTGCAGAGGG 59 NA Rattus norvegicus 81 Vom1r80 ENSRNOG00000046199 ENSRNOT00000074905 1 1 1 60 4 88026447 88026468 AGTAGGTGGATCTTCTATGTGG 59 88026489 88026507 CCCTCATCTGGTGGTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg5 ENSRNOG00000005250 ENSRNOT00000007174 3 1 1 80 6 7951171 7953533 ACTTCTACGACAAGAAGGTAGAG 60 7951113 7951134 TATAGTTGCCGATCATTTGGTC 59 NA Rattus norvegicus 81 RGD1565415 ENSRNOG00000033274 ENSRNOT00000041621 3 1 1 60 4 80313251 80313271 ATACCATCCAGGTTACTTCGG 59 80313211 80313230 CTGGTTCCTCTTCAAGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 2 1 1 83 4 200722 200741 GAAGATTTACAAGGCTGCGA 59 200787 208533 TTCACCTCCACAGCTTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Asb18 ENSRNOG00000019557 ENSRNOT00000040169 2 1 1 81 9 97130291 97151636 CATTGCTAGGAGACCTGGA 59 97130228 97130247 GTACTGATCTCGAACACCAC 58 NA Rattus norvegicus 81 Ppme1 ENSRNOG00000017227 ENSRNOT00000023648 1 1 1 80 1 165346878 165346898 GGAGGAAGAAGATGAAGAAGG 58 165343875 165346838 GGATGATCCTTCTTGGTTTCC 59 NA Rattus norvegicus 81 Sgol1 ENSRNOG00000022499 ENSRNOT00000065721 1 1 1 80 9 4427534 4429388 ACCTTACAGCAAACTGCTC 58 4431220 4431240 TGTCTCTGGTGTAACAGTAGG 59 NA Rattus norvegicus 81 Sgol1 ENSRNOG00000022499 ENSRNOT00000065721 2 1 1 80 9 4429413 4431221 AAACCACAGAAGCAAGTCC 58 4431260 4431283 CATCAGTAGAGTTGACTTTATCCG 59 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000036625 3 1 2 80 1 201905341 201906173 TCCATCTGGAACTGGAAAGG 60 201905280 201905298 ACCCGGATGATCTGATCCT 60 NA Rattus norvegicus 81 RGD1308742 ENSRNOG00000022033 ENSRNOT00000035829 1 1 1 80 3 14288673 14288694 ATGTTAATTACTCTTCGGGCAC 59 14285302 14288635 GGGCCTGAATTGTTAAGATAGC 60 NA Rattus norvegicus 81 Unc119 ENSRNOG00000011060 ENSRNOT00000015091 2 1 1 86 10 65611372 65611390 CTTTGGCTTCTGCATTCCC 60 65611438 65611719 ATCTCACTGATTAGCTCCTCG 59 NA Rattus norvegicus 81 Exosc5 ENSRNOG00000020635 ENSRNOT00000028026 3 1 1 81 1 82459950 82461283 TCTATTCTGATGCAGAGCTCC 60 82461326 82461344 GATTCTCGGTAGAAGCGGA 59 NA Rattus norvegicus 81 Pvrl3 ENSRNOG00000002176 ENSRNOT00000002957 3 1 1 80 11 57960776 57965363 TGACTGTGCTAGTTGAACC 57 57960714 57960732 CTGCTACGGTCTCATTTCC 58 NA Rattus norvegicus 81 Mrps12 ENSRNOG00000019949 ENSRNOT00000027029 3 1 1 237 1 86923321 86923560 TACGACCCTGCTAGTTTGG 59 86921146 86921164 GATAAATGTGCGCAACACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911295 ENSRNOG00000050978 ENSRNOT00000075762 3 1 1 100 11 36477178 36479426 CGGGAAAGGATAAAGCATCAG 59 36477098 36477118 CAGATCTGTAGTTTGCTGGTC 59 NA Rattus norvegicus 81 Tmem45al ENSRNOG00000042975 ENSRNOT00000002233 2 1 1 82 11 46080291 46080311 TACTACTAATGCACTTCCGCT 59 46080349 46081309 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Apod ENSRNOG00000048273 ENSRNOT00000073330 2 1 1 83 11 72722049 72725828 AGTTCTTCTCGTTGATGCCA 60 72725874 72725892 TGGTGCAGGAATACACGAG 60 NA Rattus norvegicus 81 Stard4 ENSRNOG00000020468 ENSRNOT00000027755 3 1 1 83 18 25993221 25993240 CTTCAGAACACTCTGATCCA 57 25992036 25993177 CCAAACGGTTACATCTTTCAC 58 NA Rattus norvegicus 81 Olr1169 ENSRNOG00000047916 ENSRNOT00000071855 2 1 1 60 8 20359067 20359087 AGTTCTTCCAAGCAAAGTGTG 59 20359107 20359127 TCATCATGGGAACTATCGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034637.1 ENSRNOG00000040314 ENSRNOT00000062045 1 1 1 79 11 82052788 82052807 AGGACTGAGAAGGGAAAGAG 59 82052849 82052867 TCTCCTCTTCTCCTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 2 2 2 80 11 58834241 58844106 AAGGTCACTGTGAACTATCCA 59 58834181 58834199 TTTGAGGGAAGCTTGTCGT 60 NA Rattus norvegicus 81 Tuba3b ENSRNOG00000031707 ENSRNOT00000044425 3 1 1 98 4 157793805 157794056 CACTGTGGTCGATGAAGTG 59 157793725 157793744 CTGGCATAATTATTGGCTGC 58 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108,ENSRNOT00000020144 1 2 2 80 9 47166984 47167004 AGATCGTCTGAAGTTTCTACC 57 47167044 47168031 TTAATCGATTCAGGGCTTCTG 58 NA Rattus norvegicus 81 Ss18l1 ENSRNOG00000060010 ENSRNOT00000085718 1 1 1 80 3 175439752 175439772 CTACAGTGAACAGTACAGCCA 60 175439814 175440753 TAGTCACTGTGGCCATCTG 59 NA Rattus norvegicus 81 Olr135 ENSRNOG00000043392 ENSRNOT00000067478 1 1 1 60 1 169116149 169116167 CAGCCGATGTTCTTGTTCC 59 169116191 169116209 TTGAAGCAGAGACACCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr135 ENSRNOG00000043392 ENSRNOT00000067478 3 1 1 60 1 169116684 169116704 GGAAAGCTCTCAATACTTGTG 57 169116726 169116744 ATAGGCACGTAGTACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 2 1 1 61 5 140023874 140023893 TGACTTTATTGGCAATCGGA 58 140020271 140023851 TTTCTGAATTGACCGAATGC 57 NA DesignNoJunction Rattus norvegicus 81 Top3b ENSRNOG00000001845 ENSRNOT00000002524 2 1 1 80 11 88352818 88352837 TATCCCGAGAACTTTGACCT 58 88352631 88352776 CAACTGCTTTACCGAGTCTG 59 NA Rattus norvegicus 81 Sms ENSRNOG00000007688 ENSRNOT00000010135 2 1 1 81 X 40393377 40394112 ATGGTCACTATGGTAGAGATTGAC 60 40394148 40394170 CTAAGACATCTCCACATGTTCTG 59 NA Rattus norvegicus 81 Prl3d1 ENSRNOG00000050920 ENSRNOT00000042298 1 1 1 80 17 39777581 39778349 CCTTATACAACAGGACTCAGG 58 39777521 39777539 AGTCTTTGAGTCCAGACCA 58 NA Rattus norvegicus 81 Prl3d1 ENSRNOG00000050920 ENSRNOT00000042298 3 1 1 80 17 39777582 39778351 GACCTTATACAACAGGACTCAG 58 39777523 39777541 TCTTTGAGTCCAGACCAGG 59 NA Rattus norvegicus 81 RGD1305089 ENSRNOG00000007043 ENSRNOT00000009304 3 1 1 80 6 76165506 76168473 TTTGCTGATAACATCTCGGA 57 76168515 76168534 GGTGATAAACTTGCAGTGAC 57 NA Rattus norvegicus 81 Ppp1r3e ENSRNOG00000014904 ENSRNOT00000019992 1 1 1 132 15 33536975 33536993 ATGATCGGACATAGAGCCG 59 33536861 33536879 TATAAAGCTCAGGTTGCGG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 3 2 2 81 20 6784979 6785002 CTAAAGGAGAATTTGGACTCTTGG 60 6780508 6782976 TCCATGTTTGACAGAACAAGAC 59 NA Rattus norvegicus 81 Gimap9 ENSRNOG00000024569 ENSRNOT00000032802 2 1 1 80 4 78310419 78311572 CCTGCAGAAGATATTCAGGT 57 78311614 78311633 TTCCCTACCAGAATGATCCT 58 NA InUTR Rattus norvegicus 81 LOC100910363 ENSRNOG00000057610 ENSRNOT00000090325 2 1 1 60 2 35398532 35398553 TGTTTCTTGTACACAGTGATGG 59 35398493 35398513 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307235 ENSRNOG00000015508 ENSRNOT00000020892 1 1 1 80 13 25713004 25715056 CTACCTTCCTAAAGAAATCCGT 58 25715095 25715115 ACCAAATCAGCCTTATCTTCC 58 NA Rattus norvegicus 81 U2af1 ENSRNOG00000045860 ENSRNOT00000074081 2 1 1 80 20 10397841 10398216 GTATGTCAAGTTCCGACGTG 59 10397780 10397798 ATTGGCTGCCCATTAAACC 59 NA Rattus norvegicus 81 Fam65b ENSRNOG00000018804 ENSRNOT00000048298 2 1 1 80 17 42367198 42367493 CAATCAAGGTCACGGAACTC 59 42367137 42367156 CAAACAGCTCTTTGGTCTCG 60 NA Rattus norvegicus 81 Ube2d4l1 ENSRNOG00000029497 ENSRNOT00000045603 3 1 1 60 X 83570645 83570668 GACAGTATCTAAAGTTCTCCTGTC 59 83570684 83570705 ATCATCTGGGTTAGGATCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346,ENSRNOT00000079437 3 2 2 80 10 30984589 30988738 GGATTCCGATACAATGAACGG 59 30988777 30988798 AAACGCACTCTTGTTCTTATCC 59 NA Rattus norvegicus 81 Tmigd1 ENSRNOG00000003865 ENSRNOT00000005129 1 1 1 80 10 63272100 63274509 CAGGGAAGGACAAGTTCTG 58 63272038 63272059 TGCTTGGATACCATAGTAAGTG 58 NA Rattus norvegicus 81 Sval1 ENSRNOG00000025519 ENSRNOT00000021832 1 1 1 94 4 71376564 71376584 CTTCAAATTCTCTACCAGCCC 59 71376636 71377714 AGAGTGTTCCTATTATCCTGACC 59 NA Rattus norvegicus 81 Pdlim4 ENSRNOG00000050794 ENSRNOT00000074616 3 1 1 83 10 39396265 39399923 CTCAGTAAGCAGGCCTGAG 60 39396200 39396218 TCAGGGTCAATGTGGATCC 59 NA Rattus norvegicus 81 Gadd45g ENSRNOG00000013090 ENSRNOT00000018252 1 1 1 91 17 13392558 13392576 ATTGCACGAACTTCTGCTG 59 13392383 13392503 TGTCAGGGTCCACATTCAG 59 NA Rattus norvegicus 81 Prune2 ENSRNOG00000015088 ENSRNOT00000054794 1 1 1 80 1 236692617 236692635 CTGCATCCACATTCCAGAG 58 236684288 236688858 TAAAGGCAGCTAGTTCTCAC 57 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878,ENSRNOT00000022849,ENSRNOT00000088647,ENSRNOT00000049426 3 4 4 80 9 117662354 117663069 CTTCTCAGGTCGATCCTGG 59 117663113 117663131 TACTCGTGGTTTCAGACGT 59 NA Rattus norvegicus 81 Il5 ENSRNOG00000008111 ENSRNOT00000010729 3 1 1 95 10 39066844 39067385 GAGCAATGAGACGATGAGG 58 39069312 39069333 TGATTCTTCAGTATGTCTAGCC 58 NA Rattus norvegicus 81 Rnf14 ENSRNOG00000045637 ENSRNOT00000075159 3 1 1 80 18 31461656 31461677 AGGAGATGGAGAGTAAAGACTG 59 31461716 31463477 CGTCTAATTTCTGTATGGGCG 59 NA Rattus norvegicus 81 Mmp2 ENSRNOG00000016695 ENSRNOT00000022679 2 1 1 80 19 15563874 15564086 GGAGAAGGACAAGTGGTCC 60 15563812 15563832 CCGACCATTAAACAAGAAGGG 59 NA Rattus norvegicus 81 Olr1557 ENSRNOG00000046622 ENSRNOT00000060874 3 1 1 60 11 43617397 43617416 TATCATCCACAGTGACACCA 59 43617356 43617375 GAAATCACCTTGCCCTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epm2aip1 ENSRNOG00000043006 ENSRNOT00000056050 1 1 1 60 8 119524777 119524798 TTCTGACCATTATCAACCTGAC 58 119524819 119524837 AGAATTGCCGACATGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 2 2 2 80 7 15199961 15199981 GTCTTATTAATCTCCCGCTGC 59 15199808 15199920 GACACAGATGTTCCCTTTGG 59 NA Rattus norvegicus 81 Aff4 ENSRNOG00000006965 ENSRNOT00000009440 3 1 1 80 10 38758060 38759744 CTCACAGTACTTTGCCTGAG 58 38759786 38759805 GTACTTCAGAGCGTTCTCCT 59 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000032937 2 1 2 80 1 227763116 227814924 AATCTTTGGTAGATGGCAGC 58 227814965 227814985 TGGCAGACATGATAATGATGC 59 NA Rattus norvegicus 81 Lix1l ENSRNOG00000021213 ENSRNOT00000056237 3 1 1 80 2 198744631 198746946 TGGCATCTTTCAATGGTAACAG 59 198746985 198747005 TAGATTCCAGCATGAATCGGA 59 NA Rattus norvegicus 81 Amer3 ENSRNOG00000023603 ENSRNOT00000033700 3 1 1 60 9 41098460 41098480 ATCAGCAGATATGAAAGGCAG 58 41098502 41098520 GCATTGCACATCCTTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1265 ENSRNOG00000047572 ENSRNOT00000073159 1 1 1 60 2 46223592 46223610 CCAGCACTTACAACAACGA 58 46223633 46223652 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1147 ENSRNOG00000006577 ENSRNOT00000008594 3 1 1 60 8 19527172 19527193 TGCTGTATTAGAAAGCTGTGTC 59 19527133 19527153 ACAAATAGCTGCATAACGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363943 ENSRNOG00000033056 ENSRNOT00000050658 1 1 1 80 7 15821386 15821579 TACCTTCGCAAACATGAACG 59 15821325 15821344 GGAATAGGTGAAGGCTTTCC 58 NA Rattus norvegicus 81 Olr1316 ENSRNOG00000057118 ENSRNOT00000087263 3 1 1 60 8 43567481 43567499 GAGAGCAGATTCAAAGCCT 58 43567522 43567541 AGAAGACAGCCACAGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcst1 ENSRNOG00000020621 ENSRNOT00000027986 2 1 1 80 2 188681878 188681898 AAATCAACAACACCCGATCTG 59 188681173 188681837 CTTTGCTGCTCAGCATATCC 60 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384,ENSRNOT00000079335 2 2 2 87 1 190591156 190591177 TCGAGGCTTTATTGAAATACCC 59 190586543 190591110 CTTTGGTGTATGTGGGATTGG 59 NA Rattus norvegicus 81 Napsa ENSRNOG00000019854 ENSRNOT00000026992 3 1 1 80 1 100584491 100584597 CCAAGTTCATGAACACCCAG 59 100584639 100584658 CCGTGTCAAAGACAACTGTG 60 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 2 2 2 82 13 98525066 98525084 TCTGATCATGATCAGCGTC 57 98522387 98525022 CATGGATGAACTTGTAACAGC 58 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 3 2 2 83 13 98525067 98525085 CTCTGATCATGATCAGCGT 57 98522387 98525022 CATGGATGAACTTGTAACAGC 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 LOC681338 ENSRNOG00000032947 ENSRNOT00000047517 3 1 1 60 9 60923371 60923390 TAACTTACGTGCCTGTTACC 58 60923330 60923350 TAGTTCTCATCCACTTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm44 ENSRNOG00000001058 ENSRNOT00000001409 3 1 1 80 12 2526630 2526648 GACCCAACCTTTGACAAGG 59 2526691 2528023 GGAAATCATGGCCTCTAGGA 59 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 1 1 1 70 15 4130908 4131040 CAACTCCAGCAAAGAAGGG 59 4131074 4131092 ATCTTCATCCTCATCGCGG 60 NA DesignNoJunction Rattus norvegicus 81 Abca8 ENSRNOG00000004040 ENSRNOT00000005489 2 1 1 80 10 98243945 98243968 GGAAACCCTTCTATATTGCTTCTG 60 98243008 98243908 GATTGCTTGCCATATTTGCTG 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 2 2 2 80 1 144161631 144161650 TTACCAGTAAAGCTGTTGCA 58 144161691 144163924 CTAGCTTAGCTCTGTATGCTG 58 NA Rattus norvegicus 81 Dcun1d3 ENSRNOG00000014037 ENSRNOT00000019167 2 1 1 91 1 189628694 189630453 GCAAATTCACCAGGAAGGAG 59 189628622 189628641 TAAGAGGCTAGGGAAACGTG 59 NA Rattus norvegicus 81 Gpr149 ENSRNOG00000014793 ENSRNOT00000019929 3 1 1 80 2 152909095 152910050 CTATGATGATCCACATGGTGG 58 152909035 152909054 GGGTTAGTAGAAAGCTGAGC 58 NA Rattus norvegicus 81 Pak4 ENSRNOG00000019883 ENSRNOT00000026966 1 1 1 89 1 85197879 85197897 CTACCTGGTAGGCGATGAG 59 85197950 85198251 TCATTCATCCTGGTGTGGG 59 NA Rattus norvegicus 81 Spcs2 ENSRNOG00000018164 ENSRNOT00000024772 3 1 1 97 1 164839426 164849647 GTGGTTTGTTGGATAAGTGGA 59 164839349 164839368 TTTGGCAGAATCATCCAGAG 58 NA Rattus norvegicus 81 Olr127 ENSRNOG00000034039 ENSRNOT00000045417 3 1 1 60 1 168905123 168905146 TACAGAACTACCAATATCTCCCAC 60 168905086 168905105 CTGCCAATTTCACAATAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scnn1a ENSRNOG00000019368 ENSRNOT00000067271 1 1 1 80 4 157847825 157847843 TCTAGAGGAAGAAGCCCTG 58 157847887 157853165 TTGGAATAATTCGCCTGGT 57 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524,ENSRNOT00000074278 1 2 2 80 2 173798990 173800674 CGGCTCAATTTAATTGCAACTG 60 173798931 173798950 ACCAACTGGTTTAGACAGGA 59 NA Rattus norvegicus 81 Trim7 ENSRNOG00000002469 ENSRNOT00000003339 1 1 1 80 10 34187234 34187256 CCTTGAAGAAAGTACTGGAAGAC 59 34187295 34192290 CCATCTGCTTTAGAAGCTCC 59 NA Rattus norvegicus 81 Ms4a8 ENSRNOG00000020939 ENSRNOT00000063879 3 1 1 81 1 227145034 227145052 ATCACCAACCTCTTCAGCC 60 227140676 227144992 AAATGATAAACCAGATGCCTCC 59 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344,ENSRNOT00000019862 3 2 2 80 17 15392071 15393291 ATTACAAGGACGTTCAGGAC 58 15392010 15392029 TCCAAGCAACTAAGGATGTG 58 NA Rattus norvegicus 81 AC120727.2 ENSRNOG00000051858 ENSRNOT00000072444 3 1 1 60 X 1600977 1600995 GGCTCTGTGTTGACAAGTG 59 1601019 1601037 CAGATGGTTCTGACAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 2 2 2 80 20 5530003 5530022 CTTTCAGACACTCCCAAAGG 59 5530065 5530178 CCCTGAAATGAAACGGTCC 59 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 2 2 2 114 1 87046662 87047023 GGCTTCAAGACTGTGATCG 59 87047101 87047119 TCTTCACAGAATGCAGCTG 58 NA Rattus norvegicus 81 Timp4 ENSRNOG00000007955 ENSRNOT00000010748 3 1 1 84 4 147161207 147161226 GTCTACACGCCATTTGACTC 59 147158831 147161160 GAATCTGGCCAGTCAACAG 59 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 3 2 2 80 9 9991830 9994016 GGAAGCATTCAACAGTCCT 58 9994059 9994078 TGCCTGTAAGTTTCTCTTGC 59 NA Rattus norvegicus 81 LOC100911867 ENSRNOG00000008190 ENSRNOT00000011633 1 1 1 80 3 2186749 2187817 GATCATGAGGAAGGTGACCA 59 2187860 2187878 GTCCTCTTCCTTACTCGCT 59 NA Rattus norvegicus 81 Olr1222 ENSRNOG00000030341 ENSRNOT00000042601 2 1 1 60 8 41937317 41937337 TGGCTTATGATCGTTATGTGG 58 41937359 41937377 GGAGACATAAGAATGGCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tceb3 ENSRNOG00000010902 ENSRNOT00000064596 2 1 1 80 5 154355645 154357073 GACATTCTTGTGGAGACTGG 58 154355584 154355602 GTCTCTGGCAAAGTTTCCC 59 NA Rattus norvegicus 81 LOC680519 ENSRNOG00000038322 ENSRNOT00000058354 2 1 1 88 6 103934470 103934488 TGGTGGCGATAATCAACTC 58 103934398 103934418 GTTCCTTCGGTATCCTCGA 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108,ENSRNOT00000068493 1 2 2 80 10 56647611 56647800 AGATCCTGTCGGTCAATGG 59 56647844 56647862 TCTGACCCGCATTCTTCAG 60 NA Rattus norvegicus 81 Arsj ENSRNOG00000000001 ENSRNOT00000055633 1 1 1 60 2 230660981 230661002 GACAATGGCATCTACTCAACAC 60 230661023 230661041 GGGAGGCTAAGATTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd3 ENSRNOG00000060806 ENSRNOT00000089057 1 1 1 80 11 61855503 61873987 TGTACTTGGAGGTGACAGG 59 61855441 61855459 ACATCATGACATCCAGGGT 58 NA Rattus norvegicus 81 RGD1563242 ENSRNOG00000022273 ENSRNOT00000030491 1 1 1 80 1 236496787 236500465 TGAAGAAGTCCATGGAAACC 58 236496726 236496744 CAACAATGGCCACATTGAG 58 NA Rattus norvegicus 81 AABR07018244.1 ENSRNOG00000058011 ENSRNOT00000088277 3 1 1 80 15 48976355 48976376 CAACTTCGCCTACAGAAGG 58 48976420 48976438 ATCACTGTCTCCAGGTGAC 59 NA Rattus norvegicus 81 Prl ENSRNOG00000017374 ENSRNOT00000023412 1 1 1 82 17 39814558 39817623 AATTAGCCAGGCCTATCCTG 59 39814495 39814513 CATCAACTCCTTGCAGGGA 60 NA Rattus norvegicus 81 Prss21 ENSRNOG00000047969 ENSRNOT00000073065 1 1 1 80 10 13216172 13216191 ACTCCACATACAAGTTTGCG 59 13216234 13219133 GTGGCAGACTCTCATCCTC 60 NA Rattus norvegicus 81 Smtn ENSRNOG00000019451 ENSRNOT00000026481 2 1 1 80 14 83763478 83766436 GCAACTTTAAGATGGAGCCC 59 83763417 83763435 CCAGAGTCTGCTCTGTTCC 60 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 2 2 2 80 13 99428760 99428778 AGCTGCTGACAGAAATGGA 59 99418833 99428722 CAATGATATCTGGTCTATTAGTGGC 59 NA Rattus norvegicus 81 Dupd1 ENSRNOG00000013034 ENSRNOT00000017483 1 1 1 80 15 2796036 2805980 ACGACCACAGTAAGATCCTG 59 2806023 2806041 GGATCATCAGGTAGGCCAG 59 NA Rattus norvegicus 81 Rn60_20_0038.2 ENSRNOG00000060724 ENSRNOT00000085984 1 1 1 60 20 1678626 1678648 CATTCTCCTTCAATGTCACAGTC 60 1678588 1678606 GTTTCCCACTCACTGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmyc ENSRNOG00000042556 ENSRNOT00000064358 1 1 1 80 3 2916943 2916961 CTTCATGTGCGACGATGAG 59 2917005 2917023 TTCTTCCAGATGTCCTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 3 4 4 80 10 82078730 82080621 TCCTATGCCTTACAGGTGAC 59 82078669 82078691 CACGGCTATGATATTAGACTCCA 60 NA Rattus norvegicus 81 AABR07037960.1 ENSRNOG00000003588 ENSRNOT00000004806 3 1 1 62 X 36280228 36280247 AGGAGCTGCACATTAATCTC 58 36280167 36280187 CCTTGGTCATTCCAATACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ap4m1 ENSRNOG00000001353 ENSRNOT00000001827 2 1 1 80 12 19314487 19315000 CGGTTGTCATGTATCACGA 58 19315044 19315062 TTTCTGAAGTTGTGGCCAC 59 NA Rattus norvegicus 81 AABR07012323.1 ENSRNOG00000046752 ENSRNOT00000074852 3 1 1 98 2 193286800 193286818 CAAAGAGCACAGCACAGTG 60 193286880 193294489 TTGTAGCACAGCAGGACTC 60 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 2 2 2 80 6 49533872 49534140 GGTCATTGTGATTATGTGGGT 58 49534181 49534200 CTCTCCTTTCTCCTCTCCTG 59 NA Rattus norvegicus 81 Ctsb ENSRNOG00000010331 ENSRNOT00000014177 2 1 1 83 15 46333676 46333694 GGAGATACTCCCAAGTGCA 59 46333740 46334281 GGAAGTGTACCCATAGTGCT 59 NA Rattus norvegicus 81 Serpinb5 ENSRNOG00000002640 ENSRNOT00000003625 2 1 1 80 13 26916734 26920061 TCAGAATCAACAAGACAGACAC 59 26920100 26920120 TGTCATCAATGTTACCCAAGC 59 NA Rattus norvegicus 81 Olr1071 ENSRNOG00000008464 ENSRNOT00000011188 1 1 1 60 7 9591939 9591959 CTTCATCCTTGTAGGCTTCAG 59 9591899 9591917 AAAGAGCAGGAAGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grb2 ENSRNOG00000037360 ENSRNOT00000056528 3 1 1 83 1 98046702 98046720 GATGAGCTGAGCTTCAAGG 58 98046637 98046657 TTCTGCCTTATACCAGTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eno2 ENSRNOG00000013141 ENSRNOT00000005601 3 1 1 81 4 157288040 157288540 CCGGAACTATCCTGTGGTC 60 157287977 157287996 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 Skor1 ENSRNOG00000013959 ENSRNOT00000018756 3 1 1 80 8 68033541 68033561 GCTTACTTTGGATGTCACAGG 59 68032195 68033502 AGCAATTTCTGCAGTTCTTCTC 60 NA Rattus norvegicus 81 Olr480 ENSRNOG00000050467 ENSRNOT00000049630 2 1 1 60 3 73474999 73475018 GATGTTGCTAATCATTGCGG 58 73474958 73474978 AGAAATGACCACAATCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr480 ENSRNOG00000050467 ENSRNOT00000049630 3 1 1 60 3 73474998 73475017 ATGTTGCTAATCATTGCGGG 59 73474957 73474978 AAGAAATGACCACAATCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem170b ENSRNOG00000031495 ENSRNOT00000046157 1 1 1 81 17 22863922 22863940 GATGATCAACCTGTCGGTG 58 22839511 22863877 ATACCACATCTCCGTGAGG 59 NA Rattus norvegicus 81 Olr1734 ENSRNOG00000058776 ENSRNOT00000047035 2 1 1 60 20 1737151 1737170 TTCTCTTCACCTACATCCGT 58 1737191 1737211 GCAATGATTCTGTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000016851 1 1 2 80 1 267612509 267612527 GGCGAAGAGAAAGGAAGAC 58 267612569 267616270 TTAGCCATAGCCTCTTCTAGC 59 NA Rattus norvegicus 81 Ephx2 ENSRNOG00000017286 ENSRNOT00000023385 3 1 1 80 15 42760487 42761906 TGATGATATGGGTCTCCTCAC 59 42759336 42759354 ACCTTGGGATCTTCTGGAG 58 NA Rattus norvegicus 81 RGD1564698 ENSRNOG00000030106 ENSRNOT00000040278 3 1 1 60 10 19715379 19715398 GAGCTGACAAGAAAGCTGAG 59 19715338 19715357 CCTCCTCTAAACTGGAACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt8 ENSRNOG00000009345 ENSRNOT00000012676 3 1 1 80 2 229646616 229650535 AATCCCAGTTATCGGCAGAG 60 229646555 229646573 GGTAGTCCGATTGACAGGG 60 NA Rattus norvegicus 81 Cst9l ENSRNOG00000005162 ENSRNOT00000006869 1 1 1 80 3 143174588 143175230 GATCGGAATAATACCTTCACCT 58 143175270 143175289 CACATTCTTGAAGAGCTGGA 58 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 1 3 3 81 17 23175163 23177435 GCATCATCAGCTGAGTCAG 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 Ermp1 ENSRNOG00000010915 ENSRNOT00000021958 3 1 1 80 1 247793969 247794762 TGTTTCTTCAGCACGTGAG 58 247793907 247793930 CATTGATCCATATTCCAGAGTCTC 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 1 1 2 94 10 15242316 15242544 GTGTTGATCACCTATGGGC 58 15242601 15251703 CTTGAGAACCTGCATCTGAG 58 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239,ENSRNOT00000079819 3 2 2 80 6 21105354 21105372 TTCCGGGAAGTAGCTAGTC 58 21103979 21105311 CCAGTCATAGGAAGGAATGC 58 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000088763 2 1 2 60 20 1815029 1815049 GCAGTATGTGGTAGAACAGAG 58 1814989 1815008 GTCCCAACCCTTAAGAGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 2 2 2 80 14 7767706 7767726 CAAGAGGTTTGAATCCAGCAG 60 7762702 7767670 GATGTTTCATATTGTCTACTGGGTC 60 NA Rattus norvegicus 81 Rfx5 ENSRNOG00000021012 ENSRNOT00000068528 2 1 1 81 2 196121521 196121539 CTACCACCCTTCTCCAGAG 59 196121788 196122149 TGTACTTCTTGCAGAATCCC 58 NA Rattus norvegicus 81 LOC100912054 ENSRNOG00000048549 ENSRNOT00000044283 3 1 1 60 8 42309481 42309501 TTACTTCTGTGACATCCTCCC 59 42309522 42309541 TTCATTGACATAGGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1151 ENSRNOG00000055639 ENSRNOT00000079046 2 1 1 60 8 19672659 19672679 TCAGAGAATCCAGAACTTCAG 57 19672619 19672639 TCAGTAGGTACATAAGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gap43 ENSRNOG00000001528 ENSRNOT00000002091 2 1 1 138 11 58672794 58672812 CTAAACAAGCCGATGTGCC 60 58672912 58717254 TCTACAGCTTCTTTCTCCTCC 59 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000027006 ENSRNOT00000035567 2 1 1 111 10 80953436 80953458 GACCTACTCGTGTGAGGTG 60 80953531 80953551 ACCAGGCTTTACAGAATCCTC 60 NA Rattus norvegicus 81 Olr1129 ENSRNOG00000039922 ENSRNOT00000061326 2 1 1 60 8 18993578 18993597 AAATGCCATCATCAGAAGGA 57 18993620 18993638 ACTGACAAATGAGACCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000004001 3 1 2 87 10 102193558 102193576 GATGATGACAACCACCCTC 58 102181699 102193507 TGCTTGAAGACTCTGTGTC 57 NA Rattus norvegicus 81 Tbc1d7 ENSRNOG00000014019 ENSRNOT00000019089 1 1 1 80 17 23790800 23790818 AAAGTTGGCTTTCGTGGAG 59 23789946 23790757 AAGCTTCTCAATGTCCAACC 59 NA Rattus norvegicus 81 Ctsf ENSRNOG00000019708 ENSRNOT00000026718 1 1 1 80 1 220118567 220118589 CTGTAACTTCTCAACACAGATGG 60 220118627 220118726 GCTGCTATCTTGTTCTCATCC 59 NA Rattus norvegicus 81 Olr1350 ENSRNOG00000030424 ENSRNOT00000052361 2 1 1 60 9 99753777 99753795 TACATCACCGTGACCATCC 59 99753819 99753837 TAGAGAAGACCTTGTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr176 ENSRNOG00000005971 ENSRNOT00000007882 1 1 1 80 3 110049654 110049673 TTCCTACACAAGGTGTTCTG 58 110046051 110049614 GTAGAGGACTGAATAGTACCTG 57 NA Rattus norvegicus 81 Cacna1a ENSRNOG00000052707 ENSRNOT00000083448 1 1 1 80 19 25623787 25623806 TTTGATCTACGGACACTGAG 57 25623848 25627650 GACGACTTGTAAACTTGGGA 58 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 2 3 3 80 2 158091956 158091975 GAGCAGACAGAACAGTACCA 60 158083024 158091914 ACATTTCTGAACCACCTCCA 59 NA Rattus norvegicus 81 Zfp874b ENSRNOG00000051377 ENSRNOT00000077781 2 1 1 92 1 37861689 37863701 GACATGAAGGAAATGCTGTC 57 37861616 37861635 GTACAGATTCCACTGAGCAG 58 NA InUTR Rattus norvegicus 81 B4galt4 ENSRNOG00000003114 ENSRNOT00000004289 1 1 1 81 11 64570069 64570088 ACTTCAACCTCTACACCTGC 60 64564924 64570025 CTGTAACGCAACCTGTAGC 59 NA Rattus norvegicus 81 Emc2 ENSRNOG00000005123 ENSRNOT00000006890 2 1 1 80 7 82368728 82377032 GGCTTATCAGTTTGCAGGTC 59 82377074 82377093 TGCAATGTCTCCAACATGTC 59 NA Rattus norvegicus 81 Bphl ENSRNOG00000017577 ENSRNOT00000023914 2 1 1 80 17 31511742 31522025 GGATTTACCAGGGTATCCG 57 31511680 31511699 AGTCATGTCCATATAGGGCT 58 NA Rattus norvegicus 81 Armc8 ENSRNOG00000014521 ENSRNOT00000019536 3 1 1 80 8 107779069 107781643 GGAACTATTGTATACAGACGCC 59 107779010 107779029 ATATACTCCTGGGTGTAGCG 59 NA Rattus norvegicus 81 Anxa6 ENSRNOG00000010668 ENSRNOT00000014464 3 1 1 80 10 40328358 40328376 AAACCTCCTTGGAGACTCG 59 40327341 40328315 TGAACTCCTGGAAGACTCTG 59 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 1 2 2 80 19 25789030 25789048 CACAGATGAGCAGTACCGT 60 25788888 25788986 ACCTTCTCAACTGTCTGGC 60 NA Rattus norvegicus 81 Ssty1 ENSRNOG00000049619 ENSRNOT00000071530 2 1 1 60 3 96552198 96552216 AACTGCCAACAAATCCCTC 58 96552239 96552258 CCGTAGACACAGTCAATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp41 ENSRNOG00000007489 ENSRNOT00000009823 2 1 1 60 7 116655520 116655538 CACAGCTCAGATGTCACCA 60 116655561 116655580 CACACTTAAAGGGCTTCTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3hav1l ENSRNOG00000013944 ENSRNOT00000018645 1 1 1 80 4 65992626 65992650 GGTGAATTTCCAGATAATCTCTACC 59 65990670 65992592 GTAGAAGTCGAGTTGTCTTTCTC 59 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725,ENSRNOT00000045628 1 2 2 80 8 111715961 111718969 CCATTTCTGGAGGTGAAGC 59 111715899 111715917 TCAGGTTGTTGGGAGTCAG 59 NA Rattus norvegicus 81 Adam8 ENSRNOG00000017897 ENSRNOT00000024369 3 1 1 80 1 212325128 212325254 TCATGAATGCAAGGTGAAGC 59 212325067 212325085 CCATCACAGAACTCCTCCA 59 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000081496,ENSRNOT00000021278 3 3 6 60 1 262013551 262013570 GGACGGATGAGGAATTTGAG 59 262013510 262013528 TCCTCATTCTCTGACTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adck4 ENSRNOG00000020848 ENSRNOT00000028290 2 1 1 80 1 84053284 84053392 TGTGAAGATCCAGTACCCAG 59 84053435 84053453 ACACTCATCTTGAGCAGGG 59 NA Rattus norvegicus 81 Serpinb9 ENSRNOG00000033772 ENSRNOT00000022194 3 1 1 80 17 32652790 32652809 GCCATATGAAGGAATGGAGC 59 32651321 32652747 AGATTGCTTTCCACCTTGC 59 NA Rattus norvegicus 81 Mageb16 ENSRNOG00000029408 ENSRNOT00000042568 3 1 1 118 X 47009348 47024045 TCAAACAGTGAGCTGTTGC 59 46979155 46979178 CTGCATATTCTGGATTCTTCTGAG 60 NA InUTR Rattus norvegicus 81 Gmfg ENSRNOG00000019838 ENSRNOT00000026891 2 1 1 83 1 85317195 85317214 TGCTAGAAGACGAATTCCAG 58 85314312 85315883 TATAGACCACGAACCTGGG 58 NA Rattus norvegicus 81 Oprk1 ENSRNOG00000007647 ENSRNOT00000010254 3 1 1 80 5 13746515 13749896 CAGGGAAGATGTGGATGTC 58 13746453 13746472 ATCTTCATGAAGAGGTCCCA 58 NA Rattus norvegicus 81 Mir3547 ENSRNOG00000047763 ENSRNOT00000071303 2 1 1 60 10 14603221 14603239 CTTCCAAGGTGGGAAGAGG 60 14603179 14603200 CTCAAGAATAGTCCTCACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 2 2 2 80 4 138701646 138745880 AATGTGGTTGTGAAAGACCC 59 138745921 138745941 AAGAACAATGCTTTCTCCCAC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 1 2 9 84 20 2083047 2083514 AGGATCCTGAGGTTTGGTG 59 2082981 2082999 AGAGTGCTTTGCTCTCCTC 59 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919,ENSRNOT00000082489 1 2 2 80 3 7795360 7795383 GATTATGTCAAGGTCAAAGTGGAG 60 7776231 7795321 AGGGTTCTCATGGGAACAG 59 NA Rattus norvegicus 81 LOC100911028 ENSRNOG00000048275 ENSRNOT00000071925 2 1 1 82 1 213577938 213578950 AGAACAAGCTACACAAACCT 57 213578995 213579013 GACAGCTTATAGGTGCCTG 58 NA Rattus norvegicus 81 Ap5z1 ENSRNOG00000001107 ENSRNOT00000001469 1 1 1 107 12 14171571 14171589 CTTCACAGAGGACCAGTGG 60 14170307 14171501 GACTTGTCATCTGCATCTGG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076751,ENSRNOT00000087894 1 3 4 80 1 267627966 267629214 GAGCTATTCTGTAAGGTCCC 57 267629256 267629275 CTTCAGATCCGTACAGTCTC 57 NA Rattus norvegicus 81 Echs1 ENSRNOG00000018522 ENSRNOT00000025446 3 1 1 80 1 212575548 212576178 TCAATGGCTATGCTCTTGGT 60 212575487 212575505 CAAACTGGGCTTTCTCACC 59 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 3 2 2 80 19 667717 667736 ACCATAGCCATACTCCATGG 59 667776 668222 TAGGAATTCGTCCATTTGTCTC 58 NA Rattus norvegicus 81 Pigq ENSRNOG00000020140 ENSRNOT00000027353 1 1 1 80 10 15294785 15294803 CTCAAGATGAATCGGGCAC 59 15294449 15294743 GTGGATATAGCTGATCCACAG 58 NA Rattus norvegicus 81 Rn60_X_0641.3 ENSRNOG00000038181 ENSRNOT00000048151 3 1 1 60 X 63440080 63440098 CGCATCTAGCAAAGTGGAG 59 63440038 63440060 CTTGTAGTTGAGGTCAATGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csf2 ENSRNOG00000026805 ENSRNOT00000032333 3 1 1 86 10 39602990 39603008 ACCTCACCAAACTCAATGG 58 39602187 39602940 TTTCACAGTCAGTTTCCGG 58 NA Rattus norvegicus 81 Dmkn ENSRNOG00000055934 ENSRNOT00000084799 1 1 1 80 1 89224118 89224136 ACTCTACTTCCGCAGACTG 59 89224727 89226339 AGATCTGAGCCCTCAATCTG 59 NA Rattus norvegicus 81 Zfp553 ENSRNOG00000017837 ENSRNOT00000023995 2 1 1 60 1 198682757 198682776 CTACAAGTGTGGTGTCTGTG 59 198682799 198682817 TTGATGTTTGATTCGGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmaa ENSRNOG00000011618 ENSRNOT00000015508 3 1 1 80 19 32323105 32323124 GGATCCAAGCAGAGTATGTG 58 32323166 32324036 AAATTCGAATCACCTTTGGC 57 NA Rattus norvegicus 81 LOC685513 ENSRNOG00000023899 ENSRNOT00000036953 1 1 1 108 19 26181256 26181364 GCATAAAGGTATCCAAGGCAG 59 26181168 26181186 TCCTTGAAAGGGTTGGTGG 60 NA Rattus norvegicus 81 Senp8 ENSRNOG00000011595 ENSRNOT00000015415 1 1 1 85 8 64561040 64572810 AGGAATAGAAGTACTGCTGAGTG 60 64559871 64559889 AACTCAAGACCACAGGGTC 59 NA InUTR Rattus norvegicus 81 Ccl11 ENSRNOG00000007335 ENSRNOT00000009756 3 1 1 81 10 69435008 69435028 TCCACAGCACTTCTATTCCTG 60 69435071 69438321 AAGTTGGGATGGAACCTGG 60 NA Rattus norvegicus 81 Rn60_19_0291.1 ENSRNOG00000030864 ENSRNOT00000050750 3 1 1 61 19 17967967 17967987 TTAAGGAAGAACAGGTCCTCC 59 17968164 17968182 TTACCTAGCAAACGCAAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 2 2 2 69 2 61691904 61692307 GGAGAACAACCAAATCTGGA 58 61691854 61691872 AGATCCTGAGAGGGATGAC 58 NA DesignNoJunction Rattus norvegicus 81 Wwtr1 ENSRNOG00000016617 ENSRNOT00000022507 3 1 1 84 2 147581135 147582559 TCCTTTCCTCAATGGAGGG 59 147581069 147581089 TGTAGGGACACTGTAACATCC 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008371 1 1 4 158 3 63205047 63207743 AGAACAAAGGTGTTATCTGGAC 58 63204910 63204928 CTCATGAGGATGTTGCCTC 58 NA Rattus norvegicus 81 Slc3a2 ENSRNOG00000018487 ENSRNOT00000025196 3 1 1 80 1 224908702 224908720 CTCTGAGTTCTTGGTTGCA 58 224908534 224908658 AGTACAAGGATGCATTCGC 58 NA Rattus norvegicus 81 LOC301124 ENSRNOG00000046002 ENSRNOT00000075344 3 1 1 89 9 10447562 10447580 GGGTCTGGAGATGTCACAG 60 10447788 10448571 ATGACCGAGATGATGCCTG 60 NA Rattus norvegicus 81 Lpxn ENSRNOG00000012611 ENSRNOT00000017109 2 1 1 80 1 229667290 229667413 GCTCCCATCACAGATAAAGTG 59 229667455 229667473 CTCTCCACAGTGAGAGCAG 60 NA Rattus norvegicus 81 Olr163 ENSRNOG00000046945 ENSRNOT00000075652 3 1 1 60 1 169699194 169699213 ACCCTGTTGTTTATGGAGTG 58 169699230 169699254 GAAAGAATCCTTATGACACAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept9 ENSRNOG00000002807 ENSRNOT00000003891 2 1 1 80 10 106340910 106341829 ACGAGAGTTTAGAATGGGTG 57 106341871 106341890 TCTGCTGTAGCTTCATTTCC 58 NA Rattus norvegicus 81 Vom1r45 ENSRNOG00000028882 ENSRNOT00000045214 1 1 1 60 1 67134463 67134484 GTTTCCAAGCAATCACAATCAG 59 67134424 67134445 GCTCTGTATTTAACCTTCATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a20 ENSRNOG00000020288 ENSRNOT00000027520 1 1 1 80 8 117471290 117472980 TCTCATGCGAGATGTTCCT 59 117473023 117473042 TTTCCCTGTGGAGTGAAGAG 59 NA Rattus norvegicus 81 Wfikkn2 ENSRNOG00000002831 ENSRNOT00000003784 1 1 1 88 10 81939318 81941807 CAGACCAGGAATGTGAGAC 58 81939248 81939266 TTTCACATCCATGTAGCGG 58 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 2 1 1 60 X 48196974 48210294 TGGGAGTAGAAGAAATCATACC 57 48210312 48210333 ATTGTCTGTTGAAGGACATCTG 59 NA DesignNoJunction Rattus norvegicus 81 Fbxw9 ENSRNOG00000004212 ENSRNOT00000005581 3 1 1 80 19 26179713 26179835 CTTGTTCGGACCTTTGATGTG 60 26179875 26179895 AGATGTTGTGTACAGAGTCCC 60 NA Rattus norvegicus 81 Gtf3c5 ENSRNOG00000010981 ENSRNOT00000015068 3 1 1 80 3 7158451 7161145 CAAATTCCAGGGAATGTCTGAC 60 7158392 7158410 CTGTCGTACATGGACACGT 60 NA Rattus norvegicus 81 Nbeal1 ENSRNOG00000021525 ENSRNOT00000023678 1 1 1 80 9 67028248 67028669 AAAGGCATCAGAGTCAAGG 57 67028712 67028731 GGATGTCTCTGGATGAAGTG 58 NA Rattus norvegicus 81 Rn60_X_0640.3 ENSRNOG00000051114 ENSRNOT00000076629 1 1 1 69 X 63419188 63419206 GTGGTCAAGAAACAGGAGG 58 63361376 63361394 TGCCAAAGTTCTTAGGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 1 1 2 107 2 181899921 181899940 AAACTGTACTTCTGGTTGCT 57 181899803 181899851 AGAGATTCAAGGGACAGGA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nfs1 ENSRNOG00000045686 ENSRNOT00000072945 3 1 1 80 3 151667435 151668329 TCTATCAGGTTCGGCATCG 59 151667373 151667391 TTTCACATGGTGGATGCAC 59 NA Rattus norvegicus 81 Trim13 ENSRNOG00000009075 ENSRNOT00000012035 2 1 1 131 15 41927567 41934487 GGAACAAAGGATGTGATGGA 58 41934580 41934599 CTCTAAGAGCCCTTCTAAGC 57 NA InUTR Rattus norvegicus 81 Olr1195 ENSRNOG00000047801 ENSRNOT00000050536 3 1 1 60 8 40219763 40219782 GCTACTCCTCTGTCATTACC 57 40219722 40219741 ATGAGGTTTCTTTGGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr410 ENSRNOG00000048499 ENSRNOT00000073976 2 1 1 60 3 16318495 16318515 GACCAAGCTGTGTATTCTGTC 59 16318536 16318555 AGTTCCCTAGCACAGTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000012079 ENSRNOT00000016117 2 1 1 60 8 42779593 42779613 GGATTAACAAAGCAGCCTGAG 60 42779633 42779653 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spg20 ENSRNOG00000014155 ENSRNOT00000057978 3 1 1 80 2 144536240 144538600 CAACATTCTGTCAGGTGCT 58 144538643 144538662 CCTTTCTGAATTGCTTTGCC 58 NA Rattus norvegicus 81 Rhebl1 ENSRNOG00000054385 ENSRNOT00000089523 3 1 1 80 7 140553261 140553440 CGGGATAATCAGCTAATTCAGG 59 140553202 140553225 GTCTTGTCCATAAGAATTCTCCAC 60 NA Rattus norvegicus 81 Slpil2 ENSRNOG00000029508 ENSRNOT00000043470 3 1 1 109 3 160738182 160738200 ACCAGAGTGCAGTACTGAC 59 160737610 160738109 TCTTCTTCACTGGTCTGGG 59 NA Rattus norvegicus 81 Retnlg ENSRNOG00000001943 ENSRNOT00000002673 1 1 1 80 11 54514367 54514386 TCCCAGTGAATACTGATGGA 58 54513852 54514324 GACAGTTATCTCGATGGGC 58 NA Rattus norvegicus 81 Trim10 ENSRNOG00000000782 ENSRNOT00000001016 3 1 1 82 20 2189450 2190864 TCCCTACAGGGAACAAATACAG 60 2189389 2189410 TTTCTCTTGATTGGGTTTCCTG 59 NA Rattus norvegicus 81 Atp1a4 ENSRNOG00000032378 ENSRNOT00000064601 2 1 1 80 13 90623623 90627495 CTACCAACAAGTACCAGATGTC 59 90623564 90623582 CTGGAGCACCTTTCATCAG 58 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469,ENSRNOT00000079999 3 3 3 80 9 10640192 10640297 AAATCACGGGTCAAATGTGAC 60 10640338 10640357 ATCTAGTAGGGTGACCTGGA 59 NA Rattus norvegicus 81 Lclat1 ENSRNOG00000034026 ENSRNOT00000043641 1 1 1 80 6 24430783 24430803 TAAACCTGTCATGGTATCGCT 59 24430845 24436099 TGGTTTCCAACAATGCCAC 59 NA Rattus norvegicus 81 Lclat1 ENSRNOG00000034026 ENSRNOT00000043641 2 1 1 80 6 24430784 24430803 AAACCTGTCATGGTATCGCT 60 24430845 24436100 ATGGTTTCCAACAATGCCAC 60 NA Rattus norvegicus 81 Emg1 ENSRNOG00000012828 ENSRNOT00000017334 1 1 1 82 4 157223818 157223836 GACATTCGAGAGTTGGTGC 59 157223448 157223772 TACTCCACACTGACCTTGC 59 NA Rattus norvegicus 81 AABR07015505.1 ENSRNOG00000055911 ENSRNOT00000064713 1 1 1 60 14 59980262 59980282 GAAACAAATCCACGGAGTCAC 60 59980222 59980241 TTGGAGCAGTACTCCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833,ENSRNOT00000055127 3 2 2 80 3 163807032 163807052 GATGAAAGCCTTACAATTCGC 58 163804554 163806990 CCCACATAAGTCTTGCCTG 58 NA Rattus norvegicus 81 Noto ENSRNOG00000037863 ENSRNOT00000057516 2 1 1 83 4 117206721 117207719 CTCAGACTCACAGGGTCAG 59 117207765 117207784 GGTATTGTGGTCCTGAAGGT 60 NA Rattus norvegicus 81 Pip5k1a ENSRNOG00000021068 ENSRNOT00000028609 2 1 1 80 2 196242141 196242159 AAGACCTATGCACCTGTCG 60 196241643 196242100 GCAAAGGGAGTACAAGTAATCG 60 NA Rattus norvegicus 81 Slc26a4 ENSRNOG00000058692 ENSRNOT00000087300 1 1 1 80 6 50824733 50824753 TGAAAGGGATGTTTATGCAGG 59 50824475 50824692 TAAACACCCAGATAACGGCA 60 NA Rattus norvegicus 81 Plekhm3 ENSRNOG00000023760 ENSRNOT00000032782 2 1 1 80 9 71617697 71631178 TGCTCAAGGAAATACAGAACAC 59 71617638 71617658 TCATGGTTCTTCCTGATCTCC 59 NA Rattus norvegicus 81 Olr401 ENSRNOG00000045719 ENSRNOT00000040288 1 1 1 60 3 15931215 15931234 GAATCTGCAAAGCCTTGTCC 60 15931254 15931275 CCATAGTACAGACAAACCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir425 ENSRNOG00000035484 ENSRNOT00000053607 1 1 1 60 8 117354826 117354846 TTTGGAATGACACGATCACTC 59 117354868 117354886 CACGATATTCCCGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000067093 2 1 2 81 1 220047524 220047542 CCTTTGTACACATGGAGCG 59 220040137 220047480 CACATCCCACCTTGAAACTC 59 NA Rattus norvegicus 81 Mir2985 ENSRNOG00000047006 ENSRNOT00000074092 2 1 1 61 2 179591385 179591404 ATCCTCATTAAGGTGGGTGG 59 179591343 179591367 GGTGGGATACTATAACAACATTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102546590 ENSRNOG00000042370 ENSRNOT00000042866 2 1 1 80 20 2268379 2268397 GAGGAGCAGAGATACACGT 59 2268193 2268335 GGTTGTTGAAGGTTCCCAC 59 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 2 1 2 137 1 84893943 84894774 GTGGTTCAGTGACATTTAGGG 59 84891942 84893844 AACTTCCCACCACTGTGAC 60 NA Rattus norvegicus 81 Mir3542 ENSRNOG00000050699 ENSRNOT00000072537 3 1 1 68 17 9636484 9636503 ACTATGGTAGGGAGAGTGGG 60 9636534 9636552 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565048 ENSRNOG00000033207 ENSRNOT00000042106 2 1 1 60 14 25584819 25584837 TCCAGAGGGTTCAGATGAG 58 25584777 25584795 TCATCCTTCTGGGCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 2 2 2 83 9 67781918 67781936 TGTGCACGACCCTAATAGC 60 67781980 67784180 TATGAGGTCATACCTGCAAGTC 60 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902,ENSRNOT00000033068 2 2 3 80 9 65120577 65120598 GATGTCCATATACACGCTACTC 58 65120638 65123360 CACAAATTTCCTCCAAGAGC 57 NA Rattus norvegicus 81 LOC100911999 ENSRNOG00000060167 ENSRNOT00000073800 2 1 1 60 8 41987929 41987948 GCCCTTATTTGTTCTGTTCC 57 41987969 41987989 TAAGCACAAGTTTCCCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfs1 ENSRNOG00000005108 ENSRNOT00000034730 2 1 1 93 14 78654798 78654816 CCATGAAGGCAGATGTGGA 60 78654873 78656300 TAGTGTTTGCCCACCTCTG 60 NA Rattus norvegicus 81 Rn60_X_0646.2 ENSRNOG00000051249 ENSRNOT00000075900 3 1 1 60 X 63683483 63683504 CCAGACAGAGTACTTAGAGGAG 59 63683523 63683543 GAACTGCGAGTATTTCTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eme1 ENSRNOG00000024420 ENSRNOT00000032693 2 1 1 80 10 82370333 82372314 TGGAAGAGGATGGAGATGAC 59 82370272 82370291 AGACCATGGACATGAAGACC 60 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 3 2 2 80 17 8516245 8516693 GTCAGCTTTAAGGTTGATAGCA 59 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Mir741 ENSRNOG00000047862 ENSRNOT00000071499 1 1 1 60 X 151274418 151274439 GCATTGGTCTACATAGATTGGT 58 151274379 151274397 ATAGCGTGGCATCTTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir741 ENSRNOG00000047862 ENSRNOT00000071499 2 1 1 60 X 151274415 151274438 CATTGGTCTACATAGATTGGTACC 59 151274378 151274397 CATAGCGTGGCATCTTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl32 ENSRNOG00000015989 ENSRNOT00000021433 1 1 1 60 17 53104222 53104240 AGAAGAAACCCTCACAAGC 58 53104988 53105006 CACATTCAGGGCAAATGTC 57 NA DesignNoJunction Rattus norvegicus 81 Gpr146 ENSRNOG00000001288 ENSRNOT00000001733 2 1 1 60 12 17346343 17346361 GTTCTTGGCCTTCTCAAGC 59 17346301 17346319 GGCTTTGTTGATGTAACGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 3 1 1 64 20 7217528 7219153 CAAAGGTCCAGAGGGTGAG 60 7217482 7217500 TGTAGGTGTCTCTGTCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Hexim2 ENSRNOG00000021287 ENSRNOT00000004218 1 1 1 94 10 91218684 91221839 AGACGAAGACTTCTGGTGG 59 91221897 91221915 AATCTCCCTTCCTGGTTGC 60 NA Rattus norvegicus 81 Cfl2 ENSRNOG00000045892 ENSRNOT00000072589 1 1 1 80 6 75761699 75761838 GACCTAGTATTTATATTCTGGGCTC 59 75761643 75761663 AATGGCATCTTTAGAGCTAGC 58 NA Rattus norvegicus 81 LOC102553785 ENSRNOG00000025200 ENSRNOT00000036989 1 1 1 80 X 71683318 71683336 GAAACCTGCAGTTCCTGTC 59 71683378 71683866 CAATTGCATCTTCTTCACCAG 58 NA Rattus norvegicus 81 RGD1304929 ENSRNOG00000022760 ENSRNOT00000039518 1 1 1 80 15 57084628 57086637 CTACGGATGATGGTGATGCT 60 57086679 57086698 CAGCAGGCAGAATGAATGTC 60 NA Rattus norvegicus 81 Adcy1 ENSRNOG00000059479 ENSRNOT00000088032 3 1 1 80 14 87411575 87412554 GGAACATGGATCTCTATTACCAG 58 87412592 87412612 TGTAGAAGTCGTTGAAGTTGG 58 NA Rattus norvegicus 81 Ythdf1 ENSRNOG00000027015 ENSRNOT00000037271 1 1 1 80 3 176422829 176429640 CAGTCCAATCCGAGTAACAG 58 176422768 176422787 AGGAAATCCAATGGATGGTG 58 NA Rattus norvegicus 81 Ythdf1 ENSRNOG00000027015 ENSRNOT00000037271 2 1 1 80 3 176421364 176421383 CAACCTCCATCTTTGACGAC 59 176417183 176421321 GATTCTGCCTTTCCTTGCG 60 NA Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 1 2 2 82 14 46025130 46025150 CCTACCAACAAGACCAAAGAG 59 46025194 46027210 TTTGTGACTCTGAACCTGC 58 NA Rattus norvegicus 81 Wdr43 ENSRNOG00000026316 ENSRNOT00000035320 3 1 1 80 6 23456290 23458093 TTAATGTCTGGCAGGTCCG 60 23456228 23456249 TATAGACTGGCTCATCTGTGAC 59 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237,ENSRNOT00000058663 2 2 2 80 15 51364425 51365053 AATTGTCACGTAGGTGGAG 57 51365094 51365115 GAGCTGATTATTTAGGAGTCCA 58 NA Rattus norvegicus 81 LOC685391 ENSRNOG00000043170 ENSRNOT00000051812 2 1 1 136 4 82649498 82654713 GCACTAGTGATGTTCTTTCATACC 60 82649385 82649405 CTAGGGACTAGAAGACTGCTG 59 NA Rattus norvegicus 81 Peg12 ENSRNOG00000024429 ENSRNOT00000031973 1 1 1 60 1 123099693 123099711 AGCAGCTCTTACTTTCGGG 60 123099651 123099670 CTTCGTGAATGAAGTCTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc114 ENSRNOG00000021109 ENSRNOT00000028662 3 1 1 80 1 101926418 101926809 AATACCTGGAGTTGGAGGA 57 101926851 101926871 CCTGAAGATGGTATAGTTCCG 58 NA Rattus norvegicus 81 Tac4 ENSRNOG00000004404 ENSRNOT00000035023 1 1 1 81 10 83087660 83088718 TGTCCATCGAAGGAAGCTG 60 83088763 83088781 CTCTGGAGGCTTTCTCTGG 60 NA Rattus norvegicus 81 Fam92a1 ENSRNOG00000016338 ENSRNOT00000022249 2 1 1 80 5 25747360 25747383 GTTATCTCAGTTAGAAAGGACACG 59 25743961 25744964 CTCTGTAATTCAGTTTCTGCCTG 60 NA Rattus norvegicus 81 Rn60_5_0814.33 ENSRNOG00000051052 ENSRNOT00000076229 3 1 1 82 5 77244025 77244044 CAGAGAAACGTGTACAAGGA 58 77243291 77243981 TTGGGATCTTGACTTCTGTC 57 NA Rattus norvegicus 81 AABR07051716.1 ENSRNOG00000060408 ENSRNOT00000075229 2 1 1 60 3 20007355 20007377 CATCCACTTTAGAATCTGGTGTC 59 20007397 20007415 TAATCTGTCCCAGACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1469 ENSRNOG00000047958 ENSRNOT00000072702 2 1 1 60 10 62361752 62361770 ACTTGTCCTTCTCTGACCT 58 62361710 62361729 ATGTTCTGCAACAACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsnl1 ENSRNOG00000005345 ENSRNOT00000007609 3 1 1 80 6 37007197 37007218 TCAACATGTATGATCTGGATGG 58 37002608 37007157 CCATCTTGTAGATAGCCTCG 57 NA Rattus norvegicus 81 Cluh ENSRNOG00000002669 ENSRNOT00000003687 3 1 1 80 10 61442643 61442811 TGATGGTGACTTAGGAGACAG 59 61442851 61442871 ATATACTCAGGTGGTGTGCAG 60 NA Rattus norvegicus 81 Nudt18 ENSRNOG00000011831 ENSRNOT00000015969 2 1 1 104 15 52266931 52267157 ACCAACAGGTGGAGTTCTC 59 52267225 52267243 TCATGAGCTCTAAGCGGTG 60 NA Rattus norvegicus 81 LOC100910252 ENSRNOG00000046635 ENSRNOT00000072493 2 1 1 80 1 221450286 221453190 GCAGGAGTCCTAGGATCTC 58 221453233 221453252 TGAAGAGGTCCTCCTTAGTG 58 NA Rattus norvegicus 81 Ftl1 ENSRNOG00000020843 ENSRNOT00000028315 2 1 1 80 1 101448774 101448793 CTGGAGAAGAACCTGAACCA 59 101448511 101448731 GAAGTCACAGAGGTGAGGG 59 NA Rattus norvegicus 81 Tescl ENSRNOG00000019427 ENSRNOT00000026268 3 1 1 60 1 81193065 81193084 TCGAGGACTTCTTCAAGACC 59 81193024 81193043 AAGCTGACTTGCATCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd8 ENSRNOG00000000054 ENSRNOT00000000060 1 1 1 221 16 19871066 19872580 CTCGATGACCTCAGGACAC 60 19870863 19870883 CCTGGATTATCTTCAGGAGGA 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Olr396 ENSRNOG00000025931 ENSRNOT00000030984 2 1 1 60 3 15749909 15749927 TTCATCCGTTACAGTCCCT 58 15749950 15749969 GGAGATGGAATGTTGCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralgapa2 ENSRNOG00000036964 ENSRNOT00000015637 3 1 1 80 3 140599060 140599078 AACCAGTCGTCTCCATCTC 59 140598776 140599020 CAGAGTTGTAGCCTTAAATAGCC 59 NA Rattus norvegicus 81 Rn60_5_0814.11 ENSRNOG00000051351 ENSRNOT00000076155 3 1 1 85 5 78041011 78041758 CTCGATGGGAAATCAAGATTCC 59 78040947 78040967 TTATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066 1 1 3 80 13 50577764 50578647 ACCTCTTCATGCAAGTCCC 60 50577702 50577721 CCGTGTCTTGCTCATTTAGC 60 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000091794 2 1 3 61 14 60058113 60060043 CAGGGTTGAAAGTGTGGTC 59 60058070 60058088 TCATCAGACTTGCTGACAG 57 NA DesignNoJunction Rattus norvegicus 81 Pcdhb10 ENSRNOG00000029244 ENSRNOT00000040125 1 1 1 81 18 30489866 30489884 ATGTTAGCGGAACTGGGAC 60 30489927 30491594 TGAAGAGAAGCAGTTCCAGAG 60 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266,ENSRNOT00000000053 3 2 2 89 13 89975511 89983958 CATCAGGGCCAAGATTGTG 59 89984010 89984029 TGTTTGTATGTTGGAAGGCC 59 NA Rattus norvegicus 81 Fxyd4 ENSRNOG00000014578 ENSRNOT00000019649 3 1 1 81 4 149986619 149986637 TGGAGGGAATAACCTGTGC 59 149985625 149985766 CTGCCTTTATCAACTGGACC 59 NA Rattus norvegicus 81 Npm3 ENSRNOG00000017622 ENSRNOT00000023963 2 1 1 80 1 265505634 265505937 TCTTCTTCGGTTGTGAGCT 59 265505572 265505593 GCACATGTTCTGTATCATCCTC 59 NA Rattus norvegicus 81 Rn60_5_0815.1 ENSRNOG00000046024 ENSRNOT00000059374 3 1 1 91 5 77298722 77298939 CGATGTGGACAAGATGCAG 59 77298419 77298437 ATACTTCCCTGCACTCTCC 59 NA Rattus norvegicus 81 Olr383 ENSRNOG00000050605 ENSRNOT00000040049 2 1 1 60 1 230765665 230765683 CGGTGGTTATCCCTATGCT 59 230765623 230765643 TCCTTCACTTCCTTGTTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmp2 ENSRNOG00000021276 ENSRNOT00000028904 1 1 1 95 3 126337628 126343856 TCACGAAGAAGCCATCGAG 60 126343912 126343933 AGAAACTCATCAGTAGGGACAG 59 NA Rattus norvegicus 81 Rps19l1 ENSRNOG00000031474 ENSRNOT00000041802 1 1 1 61 7 111722928 111722946 ACGATGCCTGGAGTTACTG 60 111722781 111722799 CTGATGAACTCCTGCTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Laptm4b ENSRNOG00000006766 ENSRNOT00000008969 3 1 1 81 7 72958312 72960999 CATTTAAGGGCTACTTGATCAG 57 72961039 72961059 TAAACCAGAACATCAGAGGAG 57 NA Rattus norvegicus 81 Il16 ENSRNOG00000011680 ENSRNOT00000016289 2 1 1 80 1 145826569 145826589 AAGCACAAAGTAGCAACTTCC 60 145821476 145826529 TGTAGGGATTAACACTGGTGG 60 NA Rattus norvegicus 81 Mir3551 ENSRNOG00000048590 ENSRNOT00000072847 1 1 1 61 X 151272885 151272903 TGGGCAGTACTGTCTTCAC 59 151272842 151272862 CACCATGGTGAATTTCATAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911615 ENSRNOG00000018736 ENSRNOT00000025319 1 1 1 80 1 214437900 214438019 TTAGGAGGAATGGCCTACTG 59 214438062 214438080 CCTCTGCATCCTCTTCCTG 60 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 2 2 2 81 8 114317920 114317938 ATGCCCTGACCTGTATGTG 60 114317981 114321545 AGGAAGGGAGCAATATCACTG 60 NA Rattus norvegicus 81 RGD1560523 ENSRNOG00000028513 ENSRNOT00000036417 3 1 1 83 13 30493750 30493771 CAGCATGATGAAGAAGTTTGTC 58 30493686 30493708 AAGGTACTTTGCTACAACAGC 59 NA Rattus norvegicus 81 Tns3 ENSRNOG00000025695 ENSRNOT00000012661 1 1 1 80 14 88678068 88678087 TTCTTCCGGAGACATTACCC 59 88677904 88678026 GCCATCTTTGATCCACTTCC 59 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002,ENSRNOT00000017859 2 2 2 80 9 60986768 60987045 TGGAAGAGAATCAAGACATGAG 58 60987083 60987104 CAAGGTTCTGTTTAGTTTCCCA 59 NA Rattus norvegicus 81 Chgb ENSRNOG00000021269 ENSRNOT00000028892 2 1 1 91 3 125433419 125438869 AGTCCTGAGGAAGAGTGGA 59 125438924 125438942 ATGGGTCTCTTAGCAACCG 60 NA Rattus norvegicus 81 Plekhg2 ENSRNOG00000030266 ENSRNOT00000044326 3 1 1 86 1 85394807 85394825 CAAGACTTTCTGGCAGTCG 59 85394953 85395127 CTTGAGGCTTATCGTTCTGG 59 NA Rattus norvegicus 81 Tomm34 ENSRNOG00000029799 ENSRNOT00000040156 2 1 1 80 3 160459553 160460736 TCAAAGATTGCACTTCAGCAC 60 160459493 160459513 GAGCTTCATATGCAGATGCTC 59 NA Rattus norvegicus 81 Olr397 ENSRNOG00000046032 ENSRNOT00000041240 3 1 1 60 3 15788877 15788896 GTGTACTTGACAACTGTGCT 59 15788919 15788937 GAGAATCCAGCCTGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs3 ENSRNOG00000009539 ENSRNOT00000012753 3 1 1 80 7 110121081 110142560 CTATGGAGAGTATGACTATGACG 58 110142598 110142618 CTGTAGCTGTTGTCATAGGAG 58 NA Rattus norvegicus 81 Gml ENSRNOG00000025641 ENSRNOT00000035496 1 1 1 80 7 116056278 116058786 AATCGCTATACGTGTGACC 57 116056216 116056235 TGCTGTTTGTACACAAAGGA 58 NA Rattus norvegicus 81 Ormdl1 ENSRNOG00000042961 ENSRNOT00000065581 3 1 1 144 9 53116487 53116506 CGTGTATTCTTGCTGGTGAG 59 53111414 53116380 ATGGGTTGTCTTCTTCCCG 60 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 1 2 2 80 3 47488401 47488422 TCAACAAACTCTCATTGACAGG 59 47488457 47490278 GGTACATAGTCACAAGTGTTATCTC 59 NA Rattus norvegicus 81 Wfdc15a ENSRNOG00000053099 ENSRNOT00000090458 1 1 1 80 3 160591855 160591875 CTCCTACAGTTCACAACAACC 59 160591659 160591815 TTTGGGTGTAACTCCTTTCCT 59 NA Rattus norvegicus 81 Nox1 ENSRNOG00000048706 ENSRNOT00000075325 2 1 1 80 X 104918002 104919061 ATTACCAAGGTTGTCATGCAC 59 104917942 104917965 CTGTCCTATTTCCATAGTAAAGCC 59 NA Rattus norvegicus 81 AABR07027869.1 ENSRNOG00000050687 ENSRNOT00000072833 1 1 1 80 17 47651603 47653493 CAAGGATGACTGTAGCTTCAC 59 47651543 47651563 ATCTGTATAACCAGGGCAGAG 59 NA Rattus norvegicus 81 AABR07027869.1 ENSRNOG00000050687 ENSRNOT00000072833 3 1 1 80 17 47653537 47653555 AAGATATGGGCCTAGGTGG 58 47651605 47653495 GAAGCTACAGTCATCCTTGTC 59 NA Rattus norvegicus 81 Acsf2 ENSRNOG00000003330 ENSRNOT00000004673 2 1 1 80 10 82286298 82286473 TGCAAAGGAAAGATTTCCCA 58 82286237 82286256 CTTTCCTGAGACAGTGAGAG 57 NA Rattus norvegicus 81 Slc27a6 ENSRNOG00000058193 ENSRNOT00000077443 1 1 1 80 18 53660165 53660185 CACAGGAGACCTAATGTTCCA 60 53660226 53662709 CCTTTCCACCTGAAAGTGTC 59 NA Rattus norvegicus 81 Nol4l ENSRNOG00000010417 ENSRNOT00000013881 1 1 1 80 3 148915248 148915266 TGACCATGAGGACAATGAC 57 148915106 148915204 CGCACGAACATATTGAAGG 57 NA Rattus norvegicus 81 Med31 ENSRNOG00000014618 ENSRNOT00000019919 2 1 1 80 10 58781345 58782961 GCCAAATATCTAAAGTACCCTCAG 59 58781288 58781306 ATTCACCAGCTCCTTTCGA 59 NA Rattus norvegicus 81 Map3k8 ENSRNOG00000016378 ENSRNOT00000022190 2 1 1 80 17 56127792 56128807 CATTGCTGATTCATCATGCAC 59 56128848 56128867 CCGAGATCAATGTAGAGGGA 58 NA Rattus norvegicus 81 Slc12a2 ENSRNOG00000015971 ENSRNOT00000021921 2 1 1 80 18 52942537 52942655 ACCTTGCAGATCCTCAGTC 59 52942695 52942717 CGATTCCTATGTAAACCACTGTC 59 NA Rattus norvegicus 81 Armcx2 ENSRNOG00000025705 ENSRNOT00000029511 2 1 1 80 X 105620945 105621476 GGAATTCGGGTTCTTAGGC 58 105620883 105620901 CCTCTAATTCAGCCAGAGC 58 NA InUTR Rattus norvegicus 81 Gipc3 ENSRNOG00000020593 ENSRNOT00000027951 3 1 1 81 7 11246055 11247211 CCTACTGAGATCCTATTCTGC 57 11247254 11247272 CTTCTAGCCCAATCTGTCC 57 NA Rattus norvegicus 81 AABR07029675.1 ENSRNOG00000030600 ENSRNOT00000048241 1 1 1 83 10 44632775 44632795 CATACAGTCCTGAGTGGCC 60 44632842 44632860 TACAACAACCAACACCCGA 60 NA Rattus norvegicus 81 Hibadh ENSRNOG00000008063 ENSRNOT00000011069 3 1 1 81 4 82607259 82607277 GGGTTATGGATGGAGTTCC 57 82605227 82607214 GCTAATCCCAGATCCTTGG 57 NA Rattus norvegicus 81 Ethe1 ENSRNOG00000019982 ENSRNOT00000027075 1 1 1 80 1 81471207 81471225 CACTCTCAGCTGTGAGGAG 60 81471268 81471871 GGAACGGCAATGTCTATCTG 59 NA Rattus norvegicus 81 Prdm6 ENSRNOG00000030486 ENSRNOT00000047755 3 1 1 80 18 48435179 48435199 CTATTACCTGTATGGGCAGCA 60 48435241 48443348 ATGTCGCAACGATTGTTGG 60 NA Rattus norvegicus 81 Tbr1 ENSRNOG00000005049 ENSRNOT00000065340 2 1 1 80 3 47679823 47680432 AACAACAATGGGCAGATGG 59 47680476 47680494 GTCCTCATTCACTTCCACC 58 NA Rattus norvegicus 81 Tspan6 ENSRNOG00000003786 ENSRNOT00000005165 2 1 1 80 X 104723940 104724363 AAAGTACGTTGCATTGCTG 57 104723878 104723897 TGGGAAATCCTGTTTCTGAG 58 NA Rattus norvegicus 81 Kcnj4 ENSRNOG00000013869 ENSRNOT00000018564 3 1 1 136 7 120744050 120744068 CTAGAGGTTTCAACCCTGC 58 120719363 120719381 TTCTTCTTGACGAAGCGGT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AC097890.1 ENSRNOG00000015772 ENSRNOT00000021149 1 1 1 86 18 51219733 51219753 GAACATACCATACTGTGCGC 60 51219802 51219820 CGTTGAGTTGGCTTTGGAC 60 NA Rattus norvegicus 81 Rn60_2_1417.1 ENSRNOG00000051125 ENSRNOT00000075973 3 1 1 60 2 122019908 122019929 TTTGAGAATCCAGATGAAGCAG 59 122019948 122019968 CATCAATTTGTCCTCCATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681193 ENSRNOG00000048562 ENSRNOT00000071028 3 1 1 99 1 214453874 214453892 CTACAGGCAGAGTACACCG 60 214452159 214452177 TCTCAATCAGGTCCACGTG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp618 ENSRNOG00000006719 ENSRNOT00000037313 3 1 1 80 5 78951901 78951922 CAATAGGAGCTCACAGAATTCC 59 78953400 78954317 GTGTAAGGTTTCTGCAGGAG 59 NA Rattus norvegicus 81 Rnf144a ENSRNOG00000007370 ENSRNOT00000009877 2 1 1 80 6 45537338 45537356 AAACTGCAATTAGCTGCCC 59 45537112 45537297 CTGCAACCATACACTCAATCTC 60 NA Rattus norvegicus 81 Reg1a ENSRNOG00000006486 ENSRNOT00000057869 2 1 1 90 4 109500107 109500126 TACAAATCCTGGGACACTGG 60 109500175 109500380 CTCTCCATTTCTTGTATCCTGAG 59 NA Rattus norvegicus 81 Sox18 ENSRNOG00000016248 ENSRNOT00000021790 2 1 1 141 3 177178615 177178633 AATCCGGATCTCCACAACG 60 177178308 177178327 ACTTGTAGTTGGGATGGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076178 3 1 3 60 X 65291087 65291105 AAGCTGAAGCAGATTGAGG 58 65291129 65291147 GGTGAATTCGAACCTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000076953,ENSRNOT00000037446 2 2 2 80 4 7166552 7166571 ACACATACCGTGTAGTTCAG 57 7166614 7166890 AGAATCCACAGTGCTTCTG 58 NA Rattus norvegicus 81 Aldh16a1 ENSRNOG00000020623 ENSRNOT00000027992 2 1 1 80 1 101142452 101142773 GTGGACAGGTATTCCAAGC 58 101142390 101142408 CTGGAGGAAGACCAGAGAC 59 NA Rattus norvegicus 81 Kel ENSRNOG00000015682 ENSRNOT00000021485 2 1 1 80 4 70981808 70981827 CTAAGCTGTGTACGATCCCT 59 70981603 70981766 AGATTTCTGCCATCTGTGGT 59 NA Rattus norvegicus 81 Serf1 ENSRNOG00000017945 ENSRNOT00000024291 1 1 1 80 2 30347043 30347062 CCCAGGAAATTAGCAAAGGA 58 30347104 30351859 GCATGATCTCTGAATCCCTC 58 NA Rattus norvegicus 81 Olr257 ENSRNOG00000051603 ENSRNOT00000090373 2 1 1 60 1 172551288 172551306 CAAAGTCCACCTTCTCCAC 58 172551246 172551267 ATTACCACCATGTAGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh13 ENSRNOG00000014371 ENSRNOT00000019298 2 1 1 80 19 51842846 51885447 ACCAAGAAAGAGTTTCAAGCC 59 51885486 51885507 GTCATCTTTGTCTTCCACTGTC 59 NA Rattus norvegicus 81 Snx2 ENSRNOG00000017832 ENSRNOT00000050631 1 1 1 80 18 48151955 48153491 AACAACCAAGACTTCTCTTTCC 59 48153530 48153550 TGCAAACCAAGAAAGTCACTG 60 NA Rattus norvegicus 81 Rn60_2_1398.1 ENSRNOG00000051202 ENSRNOT00000076371 3 1 1 60 2 120050532 120050553 GCTACTGTTCTTAATGTTGCTG 58 120050574 120050592 CTGTCTGAGGAGTAACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.22 ENSRNOG00000051041 ENSRNOT00000076455 2 1 1 60 5 77655880 77655899 AAAGGTAGGCAATACCAGAG 57 77655839 77655858 CTGCATACTTATGGCCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1403.1 ENSRNOG00000051358 ENSRNOT00000076525 1 1 1 60 2 120637900 120637919 GGCAGAAATGCTTAAAGCCA 60 120637937 120637960 CACTGCCTTCTCTTTATCTTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004678.1 ENSRNOG00000052842 ENSRNOT00000089920 1 1 1 60 1 149777880 149777898 TACAATCGGCAAAGTGGTC 58 149777838 149777857 GAGAGGGTTGACTAAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0614.1 ENSRNOG00000029559 ENSRNOT00000049652 1 1 1 60 X 60761762 60761782 CAAGGGAAGGTAATCATTTGG 57 60761804 60761822 CCTGGAAATGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 2 2 2 88 7 67341727 67344076 ATTTCATCTGGACCGATTCAG 58 67341659 67341677 GTATATCCACGGGTTGCAG 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 1 2 8 80 13 68709876 68709895 ACGTGAAGTTGGATGATCTC 58 68709937 68710074 TATCAGCTTTCAACTGAGCA 57 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 3 2 2 80 7 30317098 30317809 CAACTGGATCAGTTGAGTCG 59 30317037 30317057 CAACAGTTTGACATGTTCACG 59 NA Rattus norvegicus 81 Col1a1 ENSRNOG00000003897 ENSRNOT00000005311 1 1 1 80 10 82745978 82747462 CAAGAAGACATCCCTGAAGTC 59 82747503 82747522 GCATACATCAGGTTTCCACG 59 NA Rattus norvegicus 81 Rn60_5_0814.28 ENSRNOG00000051270 ENSRNOT00000076132 3 1 1 60 5 77396723 77396743 TTTGAATGTACTGAGTGTGGG 58 77396683 77396705 TCTGATGGATAACTAGGTGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srsf12 ENSRNOG00000051383 ENSRNOT00000091482 3 1 1 80 5 48474724 48483719 CTGAAAGAGCAGTCTACCTC 58 48483761 48483780 CTTGGATCTTGATCGTCCTC 58 NA Rattus norvegicus 81 LOC100909608 ENSRNOG00000047964 ENSRNOT00000072360 1 1 1 81 1 705965 705983 ATCAGAAAGAAACAGCCGA 57 706025 707188 TCCATATCTGCTGTATCATTGG 58 NA Rattus norvegicus 81 LOC680441 ENSRNOG00000033439 ENSRNOT00000051510 2 1 1 60 4 148361952 148361973 CAACAAACACCAGATCAAACAG 59 148361913 148361933 GACTTTAGCCACATCAATGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc124 ENSRNOG00000018932 ENSRNOT00000025626 2 1 1 81 16 20321180 20321198 AGAAGGAGCTGGAAGATGC 60 20321243 20322136 TTCTCCTTCTCCTCCTTGC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 1 3 4 80 10 67594739 67602001 AGAGGAGAAAGAGATGAAACCA 59 67602039 67602060 GTGCCATCATTATCTTGGTCAG 60 NA Rattus norvegicus 81 Srd5a2 ENSRNOG00000027042 ENSRNOT00000008983 2 1 1 80 6 25292361 25292382 AAGCCTACTACCTGGTTTACTG 60 25288087 25292320 ACAGGAAGACACCAAAGCT 59 NA Rattus norvegicus 81 Ccdc115 ENSRNOG00000013234 ENSRNOT00000082531 2 1 1 67 9 37775591 37775609 GTATGGAGCCTCAGGTCTG 59 37775770 37775789 GATCACTCTGAAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100359431 ENSRNOG00000038276 ENSRNOT00000058263 2 1 1 60 1 77721479 77721498 AGATGATGTCTTCGAAGCTC 58 77721438 77721456 ATCTGGAAGCTGTGGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299,ENSRNOT00000068190 2 2 2 80 14 110792189 110792209 TTACAGAAGCTCTTGAACCAG 58 110790920 110792147 CAGTACATCGAGCATCCTG 58 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299,ENSRNOT00000068190 3 2 2 80 14 110790920 110792148 TCAGGATGCTCGATGTACTG 59 110790859 110790877 CCAGCAGTAGATTTGCTGC 59 NA Rattus norvegicus 81 rno-mir-344a-1 ENSRNOG00000049433 ENSRNOT00000053681 1 1 1 60 1 122373320 122373338 GGCTAGATTCCAGGTACCA 58 122373278 122373297 TTTACAGCTTACAGTCAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020012 2 1 7 129 17 57074598 57082576 GAGATGAAACTGCTGCCAC 59 57082669 57082687 TCTTCTGCTAGTTGCTGGG 59 NA Rattus norvegicus 81 Pkn1 ENSRNOG00000004131 ENSRNOT00000005770 1 1 1 80 19 24814129 24814148 CTTCTTGGACAATGAGAGGC 59 24811163 24814086 TTACGGAAGGTGACCTCAG 59 NA Rattus norvegicus 81 Gpr55 ENSRNOG00000017521 ENSRNOT00000023546 1 1 1 60 9 92963454 92963473 CCTCCCATTCAAGATGATCC 58 92963413 92963431 TGTGCAGAAGACCAGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269,ENSRNOT00000009084 3 2 2 80 7 29511030 29517191 GGAAATGATCCTTCAGTTCGG 59 29510970 29510990 TTATTCAGTAAGGCCAGAAGC 58 NA Rattus norvegicus 81 RGD1562977 ENSRNOG00000034215 ENSRNOT00000046165 1 1 1 60 12 888615 888633 AGGACACAACTCTGAACCG 60 888573 888592 AATTTAGCAGACACCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abi3 ENSRNOG00000005575 ENSRNOT00000007897 3 1 1 81 10 83644538 83644931 ACTTGGAGAAAGTGGTGAC 57 83644475 83644493 CAGATGACGGTTCCTTCAG 58 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076539,ENSRNOT00000076320 1 3 5 80 13 77942363 77942382 ATGAATATGCAGATGAGCGG 58 77942425 77945180 CAGCCATTTCCTGAAGGTC 59 NA Rattus norvegicus 81 Lect1 ENSRNOG00000012821 ENSRNOT00000017400 1 1 1 80 15 61935705 61935723 ATCAAAGCACAGGTGAAGG 58 61931101 61935662 GATCTTGCCTTCCAGTTCAG 59 NA Rattus norvegicus 81 Lect1 ENSRNOG00000012821 ENSRNOT00000017400 3 1 1 80 15 61923783 61927660 GACAATCCTTACCACCAGC 58 61923721 61923742 CTCTATACAGCAGATTCCTTCG 58 NA Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 3 2 2 81 5 67900755 67985208 TTGTTGAGCTTGTCATCATGG 59 67900694 67900713 TGGATATGCACCTGAAAGGT 59 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050,ENSRNOT00000090654 2 2 2 80 14 35080465 35080484 GACCTGGAAGATTTGCTGAG 59 35079380 35080425 TCTGTGAATACAGTTCTTGGAG 58 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 1 2 2 80 4 175971251 175973366 AGCTTCAGACGTCTTTACCT 59 175971190 175971211 AAGTCTTAGAATGAAGAAGGCG 59 NA Rattus norvegicus 81 AABR07051652.1 ENSRNOG00000055193 ENSRNOT00000074650 1 1 1 60 3 18707013 18707032 ATTCCCTGTCTGCATCTCTG 60 18707055 18707073 ATGCCCTCACTTGCTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564129 ENSRNOG00000042120 ENSRNOT00000058966 2 1 1 86 17 56936557 56937029 CGAACAAATAAAGAGCGTTCTC 58 56937076 56937094 GACAGGTTTCCTGTCTGAC 58 NA Rattus norvegicus 81 Rtcd1 ENSRNOG00000014575 ENSRNOT00000020149 3 1 1 80 2 219547060 219547078 TCTGTACGTCAGCATCCAG 59 219545114 219547018 TCAGCAACAATGATGATTCCG 59 NA Rattus norvegicus 81 Cdhr5 ENSRNOG00000017762 ENSRNOT00000044238 3 1 1 80 1 214260368 214260529 GAATATAATGTATCGGAGGACACC 59 214260311 214260330 TTTGTCAGCATCTGTAGCCT 60 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000092100 3 1 11 80 6 98986415 98988252 GCAGAAATTACAGGAACTGGAG 59 98988293 98988311 ATGGATTTCGCTAACGCAG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000077127 2 1 11 104 6 99058012 99058606 CCCAACCACAGATTCTGGA 59 99058673 99058692 TATCCTCTGGGTAACACTGC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078094 1 1 11 80 6 99041450 99042093 TTCAGAAAGGAAGCTGAACAG 59 99042135 99042153 TTCACGGAGCTTTCTTCTG 58 NA Rattus norvegicus 81 Ascc2 ENSRNOG00000007349 ENSRNOT00000065188 1 1 1 80 14 84903391 84904346 GCCTAGAAAGACAAGTAAAGCC 59 84904386 84904405 CATCGAACTCATCGTTCTGG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 3 2 2 80 3 3346295 3346314 CTCCCTCAAGATCGATCTCC 59 3346356 3346666 ATGACCACGTAGTAGTCCTG 59 NA Rattus norvegicus 81 Olr411 ENSRNOG00000007911 ENSRNOT00000010360 1 1 1 60 3 20853590 20853609 ATGTACCTGACAACTGTGCT 59 20853549 20853567 GAGAGTCCAGCCTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 2 2 2 81 5 48579176 48579276 TGTAAAGGACATGGTGAGTG 58 48579317 48579338 GGCTTCTTTCATTAAACCTCTC 58 NA Rattus norvegicus 81 Gimap6 ENSRNOG00000033338 ENSRNOT00000049038 3 1 1 81 4 78342649 78342667 GGAAATCCACTGGAGTCCA 59 78339922 78342604 CTTCTTCCATCACTGGGCT 59 NA Rattus norvegicus 81 Mipol1 ENSRNOG00000009151 ENSRNOT00000012282 3 1 1 80 6 78261101 78261121 AAATCCAGCAATTGTCAGGTC 59 78261160 78263456 ATTCTTTCCACATTCCACACTG 59 NA Rattus norvegicus 81 Nacad ENSRNOG00000053875 ENSRNOT00000087212 1 1 1 80 14 86861304 86861322 TTTGTGATTGCCAAGCCAG 59 86861160 86861261 ATCCTCAATCTTGGCCTCAC 60 NA Rattus norvegicus 81 Nacad ENSRNOG00000053875 ENSRNOT00000087212 3 1 1 81 14 86861305 86861323 GTTTGTGATTGCCAAGCCA 60 86861160 86861261 ATCCTCAATCTTGGCCTCAC 60 NA Rattus norvegicus 81 Muc20 ENSRNOG00000001776 ENSRNOT00000002418 2 1 1 93 11 71227330 71227348 TTAACCAAGACCACAGCCT 59 71227403 71232623 CATTTATACCTGGATCGTGCT 58 NA Rattus norvegicus 81 Mfsd6l ENSRNOG00000037712 ENSRNOT00000057223 1 1 1 60 10 55139414 55139434 TGCTAACCTGAGTCTACTTCC 59 55139455 55139474 CTTTGACACATTGACTGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060,ENSRNOT00000018515 1 2 2 80 14 81828428 81829579 ACATCAAGAAACTGGAGGAG 57 81829622 81829640 TCTTTAGGAAGCGATGCTC 57 NA Rattus norvegicus 81 Twist1 ENSRNOG00000011101 ENSRNOT00000014763 1 1 1 161 6 53401920 53401938 GAGCTGGACTCCAAGATGG 60 53402061 53402578 ACAATGACATCTAGGTCTCCG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0602.1 ENSRNOG00000051327 ENSRNOT00000076547 1 1 1 119 X 59591943 59591961 TAGCAACTCACTGGCAGAC 60 59591373 59591392 TAGATGCAAATGCTCTGGCT 60 NA DesignNoJunction Rattus norvegicus 81 Atp5g1 ENSRNOG00000007235 ENSRNOT00000009815 1 1 1 80 10 83896994 83897941 CTCATTTCTCCAGTTCTGATCC 59 83896935 83896953 CTCTGGTCTACTCAGGAGG 58 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 3 2 2 80 7 139716026 139716044 ACCTGGAACAGATCAGTGC 60 139716088 139716201 CTGTGTAAGCCTCAAAGCC 59 NA Rattus norvegicus 81 Psme4 ENSRNOG00000060340 ENSRNOT00000078329 3 1 1 80 14 115235928 115235947 AACATGGTTGTTTATGCTGG 57 115235990 115237423 AATCTGTTCTGCCTCTGTC 57 NA Rattus norvegicus 81 LOC103690280 ENSRNOG00000058762 ENSRNOT00000083315 2 1 1 60 10 44458658 44458679 TGAAGACACATCCCAATATGAG 58 44458699 44458718 TATCAGCACAAGGACAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690280 ENSRNOG00000058762 ENSRNOT00000083315 3 1 1 60 10 44458163 44458181 CACCTTCCTCTTCACAGTC 58 44458204 44458223 TGTGATGTTGCCTATGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1b1 ENSRNOG00000009513 ENSRNOT00000012879 2 1 1 86 4 61713817 61713835 GTCTCCAACTTCAACCCTC 58 61713352 61713768 GCACTCGATCTGGTTAACAG 59 NA Rattus norvegicus 81 Musk ENSRNOG00000033567 ENSRNOT00000048457 2 1 1 80 5 75494256 75497886 TTGTGAAGCTCTTAGGTGTG 58 75497929 75497947 CATTGAGGTCACCATAGGC 58 NA Rattus norvegicus 81 LOC103691019 ENSRNOG00000053825 ENSRNOT00000090830 2 1 1 60 1 63201865 63201885 TCCAGTACATCCATGATTGTC 58 63201906 63201925 TGTGAATGTGTTGAACCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000005644,ENSRNOT00000035894 1 2 2 80 10 82871991 82872110 CTCAGCAGATAATCCACGG 58 82871929 82871947 CATCCATCTTCCCACTCAG 57 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 3 2 2 80 19 49993215 49994008 GACCATGGCAGAGATACTG 57 49994051 49994070 GTGGAGATGATCTGTAGCTG 58 NA Rattus norvegicus 81 Nadk2 ENSRNOG00000054157 ENSRNOT00000083799 1 1 1 80 2 58489130 58489148 TTCAGGACCTCAGCTTCTG 59 58489190 58493314 TAGTAAGAAGCCCTGGATGAC 59 NA Rattus norvegicus 81 Il17b ENSRNOG00000019695 ENSRNOT00000026679 3 1 1 140 18 57013748 57013767 GAGTACGAGAGGAACCTTGG 60 57013870 57015683 GTGATTGATGCTGTAGCCC 59 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000027502 3 1 2 80 1 225826306 225826324 GCTGTGAAGCAATTCAAGC 58 225825561 225826262 ATATTGCCTCCGTCATCAC 57 NA InUTR Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089551,ENSRNOT00000089805 1 3 4 80 2 78252694 78252955 TCTTTGTCCTAAGATTAGCCTC 57 78252995 78253014 GTCCAAGAGACTTCTGACAC 58 NA Rattus norvegicus 81 Ctps1 ENSRNOG00000009963 ENSRNOT00000013899 1 1 1 80 5 139493730 139493751 GATGCTCAAATCCTCTTGACAC 60 139490352 139493689 CGCAGATCACTTGTTCAGG 59 NA Rattus norvegicus 81 AABR07001512.1 ENSRNOG00000017412 ENSRNOT00000023387 1 1 1 80 1 48565505 48565541 GTTAGCAGATGGAGTCAGG 57 48565443 48565463 TGAATGTCTGTCTTCACAAGG 58 NA Rattus norvegicus 81 Minos1 ENSRNOG00000042696 ENSRNOT00000064418 1 1 1 80 5 157548193 157548974 TCTTTAAGAGAAGAAAGTGGCC 58 157548134 157548152 AGTCATGCTGACAGTTGGA 59 NA Rattus norvegicus 81 Slc12a4 ENSRNOG00000019651 ENSRNOT00000026730 2 1 1 80 19 37921646 37921914 ACTATCACTGGGCGTTGTC 60 37921584 37921602 CTAGGGCGTAGTACCAGGA 60 NA Rattus norvegicus 81 Rnf207 ENSRNOG00000033722 ENSRNOT00000046552 1 1 1 80 5 169493136 169493154 GTTCATCTGGTCATCTGCT 57 169492676 169493092 CTCCATCAGCTCATAACCC 57 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000003343,ENSRNOT00000055872 2 2 2 95 10 34278136 34283913 TTGGATCTGATCTTCCTTGGT 59 34283970 34283988 TCCATGGCTAACTGTTGGA 59 NA InUTR Rattus norvegicus 81 Rn60_X_0648.1 ENSRNOG00000055020 ENSRNOT00000092230 3 1 1 60 X 64721456 64721476 TGAGGAAGCTGTTTATTGGTG 59 64721495 64721516 TGTTCTCTTAAGCTGTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx32 ENSRNOG00000026527 ENSRNOT00000036745 2 1 1 80 1 220877548 220877895 ACTGTGCAAACCAAGAGTG 59 220877486 220877504 CCAGATGAACTCTTCGTGC 59 NA Rattus norvegicus 81 RGD1566307 ENSRNOG00000046683 ENSRNOT00000074352 1 1 1 80 1 73612515 73614007 TTCTGGCTTGTTCTGTCAC 58 73612453 73612472 CGGAGACCCATATCAAAGAC 58 NA Rattus norvegicus 81 RGD1566307 ENSRNOG00000046683 ENSRNOT00000074352 3 1 1 80 1 73612421 73612441 CTACTGTTCTTTGTCCTCACC 58 73612051 73612382 CTTTGTCTGTACTCCTTTCCTG 59 NA Rattus norvegicus 81 Pdx1 ENSRNOG00000046458 ENSRNOT00000071942 2 1 1 73 12 9500736 9500755 GAAATCCACCAAAGCTCACG 60 9496886 9496904 TATTCTCCTCCGGTTCTGC 59 NA DesignNoJunction Rattus norvegicus 81 S100b ENSRNOG00000001295 ENSRNOT00000001743 1 1 1 80 20 13135385 13135404 AAGCACAAGCTGAAGAAGTC 59 13131847 13135343 CTGCTCTTTGATTTCCTCCA 58 NA Rattus norvegicus 81 Cib4 ENSRNOG00000009898 ENSRNOT00000013123 2 1 1 80 6 27301833 27301852 CTGGACAATGACAACATGCT 59 27301892 27303432 CCGAAAGGAGTTCATGAAATCC 60 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 1 2 2 136 10 29192696 29193600 GAAGTTCAAGGCAACCGTG 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Map3k10 ENSRNOG00000023521 ENSRNOT00000034609 3 1 1 81 1 84490512 84490530 GGGCATGAACTATCTGCAC 59 84485937 84490471 CTCCAGAATTAGGATGTTGATGG 59 NA Rattus norvegicus 81 Olr237 ENSRNOG00000046456 ENSRNOT00000046903 3 1 1 60 1 172058341 172058363 ATGCCTAAGTCTAGTTACTCCAC 60 172058303 172058322 CCACCATGTAGAACACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 3 2 2 80 7 24070386 24072228 ATATTCCTGTAGTTCAGCTCC 57 24070326 24070344 CTGAATAGTTCTCCTCGCC 57 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830,ENSRNOT00000060810 3 2 2 80 6 28112870 28112891 CCCTCTGACCAATATGAATGAC 59 28112930 28126638 CCATACTGTAACCTCTTGGTG 58 NA Rattus norvegicus 81 Ehf ENSRNOG00000007484 ENSRNOT00000010580 2 1 1 80 3 93179631 93179741 GGCCATGAGATATTACTACAAACG 60 93179574 93179596 GCGTTCTTCCCAAACTTATAGAC 60 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602,ENSRNOT00000041872,ENSRNOT00000007109 2 4 4 86 6 99180328 99184276 AAATCCCTGGCTTTGTGGA 60 99180260 99180278 TCAGTCCCACCATTAGCAC 59 NA Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 3 2 2 80 9 79649556 79649574 AATCTGAAGCTGGAGATCG 57 79649616 79652302 TGTTCCACATACCATCATCTC 58 NA Rattus norvegicus 81 Ebag9 ENSRNOG00000004220 ENSRNOT00000005705 1 1 1 80 7 83572584 83573283 GTCCCTAAGCAGACAGACG 60 83573325 83573345 AGTCCCTCCTTCAATCTTCAC 60 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 2 2 3 116 17 53963268 53965584 CAATTACCAGGTAAACAGGTGAG 60 53966398 53966419 GGCATTATGCAACATTTCAGTC 59 NA Rattus norvegicus 81 Olr136 ENSRNOG00000024877 ENSRNOT00000034108 3 1 1 60 1 169128711 169128732 ATCCTTCATGTCATCAGAACAG 58 169128750 169128771 TGGCAAGAAAGAGATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxa7 ENSRNOG00000046361 ENSRNOT00000071729 1 1 1 81 4 82184722 82185730 CAGTTCAGGACCCGATAGG 59 82184659 82184679 GAAGTGGAATTCCTTCTCCAG 58 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 2 3 4 81 7 140416206 140416225 TTCACAGTATGGGACGTAGG 59 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 3 3 4 81 7 140417356 140417374 AGGAAAGACCACCATCCTC 59 140416247 140417312 TGTCTCCACATTAAACCCGA 59 NA Rattus norvegicus 81 Pygo2 ENSRNOG00000020663 ENSRNOT00000028052 3 1 1 80 2 188758202 188759657 AAAGTCCAATACTCAGGGTCC 60 188759699 188759717 ACCAGATGATCCACCATGG 59 NA Rattus norvegicus 81 Tmprss13 ENSRNOG00000016397 ENSRNOT00000021949 2 1 1 82 8 49637053 49639452 CTTTGACAGTGCCTACCGA 60 49639497 49639516 TGGTGGAGTTGTATTCGGAG 60 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000045978 ENSRNOT00000074526 3 1 1 60 4 170145222 170145240 GCAAAGGTCTGGGTAAAGG 59 170145180 170145200 TGGATGTTATCTCGGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025314 2 1 2 80 2 187345925 187347614 TACATACAGGACTCTGCTGG 59 187347657 187347675 AGAAAGCCAAGAGAAGCCT 59 NA Rattus norvegicus 81 Clspn ENSRNOG00000011332 ENSRNOT00000015227 1 1 1 80 5 144610056 144611448 TGGAAACACATAGATGACACCT 60 144611487 144611507 GTCAAGCTGTTCTTCAACCTG 60 NA Rattus norvegicus 81 Rpl15 ENSRNOG00000008140 ENSRNOT00000010759 1 1 1 80 15 8189801 8190460 AGTCTGTTGCTGAGGAGAG 59 8190504 8190522 TGGAATCTTCACCAACCCA 59 NA Rattus norvegicus 81 Fzd3 ENSRNOG00000047211 ENSRNOT00000071464 2 1 1 80 15 48645506 48645525 CATCTGGGAAACAACATGGA 58 48618280 48645464 CGACTCATCTGAGTAACCTG 58 NA Rattus norvegicus 81 Rn60_X_0634.1 ENSRNOG00000051033 ENSRNOT00000076203 1 1 1 60 X 62743233 62743252 AAAGTCCATGTCATACACCC 58 62743192 62743211 TCACACTGAGTATAGGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcc2 ENSRNOG00000025909 ENSRNOT00000036871 1 1 1 80 20 5714736 5715386 CTACTACAAGCACAAGTACCC 58 5714676 5714695 GACAGGATCAGCTTGTACTC 58 NA Rattus norvegicus 81 Uqcc2 ENSRNOG00000025909 ENSRNOT00000036871 2 1 1 81 20 5714737 5715387 ACTACTACAAGCACAAGTACC 58 5714676 5714695 GACAGGATCAGCTTGTACTC 58 NA Rattus norvegicus 81 AC095985.1 ENSRNOG00000053226 ENSRNOT00000091121 2 1 1 81 10 44421453 44421471 CAACATCACACTGGTCCAC 59 44421389 44421410 CATCATGTCGATACTGAGGAG 58 NA Rattus norvegicus 81 Kpna3 ENSRNOG00000014945 ENSRNOT00000034400 2 1 1 80 15 41714609 41716481 AAGCTGTTGTACAGTCTAATGC 59 41714550 41714571 CTGCTTGTTCACAAACATTCTG 59 NA Rattus norvegicus 81 MGC95210 ENSRNOG00000024780 ENSRNOT00000037371 2 1 1 81 10 102209724 102210641 TGTAGTTACGGAGCTGCAG 60 102210685 102210704 TTCTCTGCAGTCTCTGTCAC 60 NA InUTR Rattus norvegicus 81 Hmgn5 ENSRNOG00000049192 ENSRNOT00000071650 2 1 1 91 X 80140243 80140511 ACTGTCTGCTATGCCTGTG 60 80138038 80138057 CTTCCACGACATTTGTGGTC 60 NA Rattus norvegicus 81 Pla2g10 ENSRNOG00000003164 ENSRNOT00000004237 1 1 1 86 10 1518466 1518487 CGATGGCTTACATGAACTATGG 59 1518074 1518419 GGTAGTAGCAGCACCAGTC 60 NA Rattus norvegicus 81 Klhl26 ENSRNOG00000020088 ENSRNOT00000027241 1 1 1 80 16 20724064 20724082 GTCCTCACTGTCAACAGTG 58 20724124 20726385 GAACATGGCCCTAAAGTAGTC 59 NA Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513 1 1 2 81 13 78889518 78889536 GCCAGGAGACAGAGTTCAG 60 78889578 78892489 GATCGATATCTTCCTGCAACTG 59 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896,ENSRNOT00000060924 1 2 2 80 12 11229503 11229521 CGGACTTTCTGCAATCTGG 59 11229564 11230298 CTGGGACTTCTTCATGTCTG 58 NA Rattus norvegicus 81 Prkag1 ENSRNOG00000061499 ENSRNOT00000083354 2 1 1 80 7 140492406 140501721 GAATGAACACTCTCAAGAGACC 59 140492347 140492365 AGGTCATAGCAGCGATGAG 59 NA Rattus norvegicus 81 Fstl5 ENSRNOG00000047002 ENSRNOT00000076793 2 1 1 80 2 175132724 175132743 AAAGTGATACAACCCACGGA 59 175132783 175155498 GACTTCATCCTGAAATCCAAGG 59 NA Rattus norvegicus 81 Pgpep1 ENSRNOG00000019639 ENSRNOT00000026597 3 1 1 111 16 20529831 20530220 ATGCTGGCAGATACCTGTG 60 20530295 20530313 TGGTCAGCATTGTAAGGCT 59 NA Rattus norvegicus 81 Rn60_14_0447.1 ENSRNOG00000051349 ENSRNOT00000074180 1 1 1 60 14 44803560 44803579 GGTTCAGACTTTGCTTCAGG 59 44803519 44803537 GGCCTGGTAAGTGTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn3 ENSRNOG00000040188 ENSRNOT00000061847 3 1 1 80 3 2946255 2946497 ATACACTGCCTTTGAGGGT 59 2946193 2946211 CAGTAGAGCATGTAGTGGC 58 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 3 2 2 80 10 11886390 11886409 CTGTGGATACACAAGTTGCA 59 11885677 11886348 ATAAGAGGGAACCTATGCCG 59 NA Rattus norvegicus 81 Emcn ENSRNOG00000022910 ENSRNOT00000035700 1 1 1 80 2 242664778 242664796 AAAGCATCGGCTACAACAC 59 242664839 242671065 GTTGGTCGTTCCTTTAGGAG 58 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771,ENSRNOT00000048404 3 3 3 82 1 150503259 150503658 CAGAACTCCAGAGCTTTACTG 59 150503702 150503720 TGGGTGACATCTGGTAGAG 58 NA Rattus norvegicus 81 Cd28 ENSRNOG00000010283 ENSRNOT00000013701 1 1 1 113 9 67566735 67566753 CTCAGACGTCTCCTAAGCT 58 67566829 67571162 TCCTTCTGCTATTTGTCCAG 57 NA Rattus norvegicus 81 Rad54b ENSRNOG00000039949 ENSRNOT00000061370 3 1 1 80 5 25210640 25210658 CCATGGCTAGAGTGTGGAG 60 25210696 25210886 TTTCCTCTATTGTACCTGTAGTCAG 60 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 2 2 2 80 X 65566319 65568352 CTCTGAACAATGACACAGTGG 59 65568390 65568412 AGACAGTCTTCTTGTAAGTACCC 60 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076990 1 2 3 83 13 77952926 77954663 GTAATTATGGATGGGATCAGTCAG 59 77952866 77952884 CATTCTCAGCAGGAACCTG 58 NA Rattus norvegicus 81 Dzip1 ENSRNOG00000010311 ENSRNOT00000038596 1 1 1 80 15 104161346 104161366 CCTTTATGAACCAAGCATTCC 58 104158683 104161307 CCTTTGTATTGTACTCAAGGTG 57 NA Rattus norvegicus 81 Klk15 ENSRNOG00000033805 ENSRNOT00000038353 2 1 1 80 1 100194512 100194633 CACAAGTCACAAGTGAGACTC 59 100194675 100194693 GTCCTTGTTGCAAGATGCC 60 NA Rattus norvegicus 81 Syngr4 ENSRNOG00000021093 ENSRNOT00000028635 2 1 1 83 1 101873815 101874911 TCATTCTGGCTGTCCTCTG 59 101873750 101873768 GCTTGGACTTCGAATGCTG 60 NA Rattus norvegicus 81 AABR07051564.1 ENSRNOG00000061576 ENSRNOT00000073316 1 1 1 60 3 17139774 17139792 CCAACAGAAATCGGGACAG 59 17139815 17139834 AGATTCTAGGTTGGATGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000072158 2 1 2 65 1 212872543 212872565 CCCTGTCATTTATTCTCTGAGGA 60 212872584 212872732 GGACATACAAATAACTTTCTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Fzd4 ENSRNOG00000016848 ENSRNOT00000023205 3 1 1 104 1 153589841 153589859 CAACTTAGTGGGACACGAG 58 153589927 153592002 CAAAGGAAGAACTGCAGCT 58 NA Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 2 1 1 60 11 71747991 71748406 GGTTCACCTCAATGGAACTG 59 71747950 71747968 AAGCAAATGAGGACCTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Scrt1 ENSRNOG00000025594 ENSRNOT00000035423 2 1 1 84 7 117586759 117586777 CATTCTCTTCGGCAGACCT 60 117584767 117586715 CTGAGGTATCCTTTATCTTGCAG 59 NA Rattus norvegicus 81 Spx ENSRNOG00000053700 ENSRNOT00000087378 3 1 1 98 4 176630208 176630226 ATGCTCTATCTGAAGGGCG 59 176630964 176632351 TGGGTTTCGTCTTTCTGGA 59 NA Rattus norvegicus 81 Fkbp8 ENSRNOG00000058359 ENSRNOT00000077756 1 1 1 80 16 20647108 20647126 CTCAGCAGGGTGAATACAG 58 20646788 20647064 CATGGATCGTCTTGTTGGA 58 NA Rattus norvegicus 81 Fkbp8 ENSRNOG00000058359 ENSRNOT00000077756 2 1 1 80 16 20647106 20647125 TCAGCAGGGTGAATACAGTG 60 20646787 20647063 GCATGGATCGTCTTGTTGG 59 NA Rattus norvegicus 81 Papln ENSRNOG00000009448 ENSRNOT00000012757 3 1 1 80 6 107267710 107267978 ATCTCCTCTAACAGGTACCAG 58 107268019 107268038 ATAGATGCCAGCATCTTCTG 58 NA Rattus norvegicus 81 Ropn1 ENSRNOG00000002187 ENSRNOT00000002975 1 1 1 80 11 69326972 69328827 TTGAACAGGAAGTAATTGGTCC 59 69326913 69326931 TTTATTCCAGCCGAACCCT 59 NA Rattus norvegicus 81 Erich5 ENSRNOG00000005956 ENSRNOT00000007816 1 1 1 80 7 73241493 73242780 ACACATTGAAGGAGAAACCG 59 73242820 73242841 TCTTTGGTTTCAGCTTCTTCAC 60 NA Rattus norvegicus 81 Tas2r137 ENSRNOG00000030413 ENSRNOT00000046917 1 1 1 60 4 68653913 68653932 ATGTTCTTGGGAATCTGTGG 58 68653954 68653973 AGAAAGTAGGCAATCAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magel2 ENSRNOG00000010158 ENSRNOT00000013483 1 1 1 60 1 123019019 123019038 ACCCACACTTACATCATCGT 59 123019060 123019079 AGGATGCCAGCAAATTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyrobp ENSRNOG00000020845 ENSRNOT00000028284 1 1 1 80 1 88875481 88875499 GTGCTTTCTGTTCCTTCCT 58 88875988 88876144 CATCCTGGGTAATTGTCACTC 59 NA Rattus norvegicus 81 LOC684171 ENSRNOG00000050377 ENSRNOT00000072109 2 1 1 60 1 167811625 167811645 CATTCTAGCAGTTGTCAAGGT 58 167811665 167811685 GCAGAGGAAGTAGTACATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gorasp2 ENSRNOG00000055853 ENSRNOT00000088097 1 1 1 80 3 56991417 56992790 ACATTACCAAGTCTGATGCC 58 56992833 56992851 AGGGAGGTTGAAGTTGGAG 59 NA Rattus norvegicus 81 Atp5j2 ENSRNOG00000027049 ENSRNOT00000033537 2 1 1 80 12 11197531 11197552 CATCTCAGGGATTAACATGGTG 59 11197593 11198224 CGTTCGTGTTTGAGTTCCT 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000080010 3 1 3 60 7 143316997 143317015 AACCTGCAAATCGATCCCA 60 143316955 143316973 TCTTGATCTGCTCCCTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs13 ENSRNOG00000009673 ENSRNOT00000012825 1 1 1 112 10 65332886 65332904 CATCTTCATGGCCTTGGAC 59 65332653 65332810 AACTGATCCCTGCATTGTG 58 NA Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 2 2 2 83 4 180131575 180132030 ACATAGAGACAGAGGCACC 59 180132077 180132095 GGATACGGAGGTTACTGGG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 2 4 4 80 1 50828659 50828677 AACTTATGGAGCAGCAAGC 59 50828718 50864550 TACTCTGCTAATTTCTTCGTCC 58 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 1 1 1 138 11 65759137 65759155 TCCAGGTACTCAACCTCAG 58 65751686 65759035 AAACTCTGCAAGTTCTCGA 57 NA DesignNoJunction Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190,ENSRNOT00000077730 3 2 2 80 7 73293133 73296329 TAGAGAAGTACCAAAGACGCC 60 73296371 73296389 AGGGACAACAGAAAGGAGC 60 NA Rattus norvegicus 81 RGD1565775 ENSRNOG00000020139 ENSRNOT00000027385 3 1 1 80 2 188076122 188076140 CAGAAGAGGCGATTCACAG 58 188076182 188077104 CATATGAATGGGTCCATGCTG 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 2 3 3 80 7 99177274 99177293 TCCCTATTGGAGTACCACAC 59 99177334 99177522 GGTACACTTCAGTGTTCTTGG 59 NA Rattus norvegicus 81 Pef1 ENSRNOG00000013972 ENSRNOT00000018742 1 1 1 90 5 148337320 148340910 GACCTTATGGACAGGGTGG 60 148340964 148340982 ATATAGCCACTGTGGTCGG 59 NA Rattus norvegicus 81 RGD1308564 ENSRNOG00000043116 ENSRNOT00000065701 3 1 1 80 10 43727753 43727772 GGGTTACTCAGTCAAAGCTG 59 43727812 43728956 TCTTCCACAATCTTTCTCAGAG 58 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000003689 2 2 5 80 13 78758181 78758201 ATGAGGAAGCCAAGAAATGTG 59 78758242 78759593 TATTCAAGCCCACTCCTCTC 59 NA Rattus norvegicus 81 Rn60_12_0174.1 ENSRNOG00000024342 ENSRNOT00000030304 3 1 1 60 12 15347120 15347140 ATCTCGCTAACATCAAATGGG 59 15347080 15347099 ACACCAGTAGACTCCATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bag3 ENSRNOG00000020298 ENSRNOT00000027616 3 1 1 80 1 199958354 199958374 AGATAAACAGTGTGGACAGGT 59 199958416 199959926 GGAGACTGAGATCGCTCAG 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298,ENSRNOT00000002030 1 2 3 80 12 25533747 25533765 CAATTACAGCCTTGCCACC 60 25533201 25533706 CCTAGGAAAGGTCTCTTTACGA 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995,ENSRNOT00000084066 2 2 2 95 10 13555952 13555970 CATTTGGTCCTGGATCCCT 59 13555232 13555895 AAATAGAACCTGCTTAGGCTG 58 NA Rattus norvegicus 81 Olr1459 ENSRNOG00000050291 ENSRNOT00000052329 3 1 1 60 10 44789927 44789947 TACTTGTTCCTCTCACCTGAC 59 44789967 44789987 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390,ENSRNOT00000082221 3 2 2 80 1 214500649 214501913 ATGATGTGGACCAAGGGTG 60 214499796 214499814 CTTCAAACAGAAGCCGAGG 59 NA Rattus norvegicus 81 Kremen2 ENSRNOG00000004122 ENSRNOT00000005718 2 1 1 90 10 13079135 13079865 CAACTTCTGTAGGAACCCG 58 13079063 13079081 GATATCACAGTAGCGCCAG 58 NA Rattus norvegicus 81 LOC100362965 ENSRNOG00000022595 ENSRNOT00000034599 1 1 1 60 17 61332239 61332257 TCAGCAACAGCAAATTCCT 58 61332197 61332215 AGCTAAGAACGCCTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911238 ENSRNOG00000049229 ENSRNOT00000071796 3 1 1 94 12 8976651 8978443 GTTTCCAAGATGAACGCCAG 60 8978500 8978518 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 Bpifa2 ENSRNOG00000013540 ENSRNOT00000018226 1 1 1 89 3 149495254 149495787 GAATGGTTTATTGTTGCGAGTC 59 149495837 149495855 AGTTTCAGGTCGATGTCCT 58 NA Rattus norvegicus 81 Bpifa2 ENSRNOG00000013540 ENSRNOT00000018226 3 1 1 91 3 149495254 149495787 GAATGGTTTATTGTTGCGAGTC 59 149495839 149495857 GCAGTTTCAGGTCGATGTC 59 NA Rattus norvegicus 81 Lhfp ENSRNOG00000014153 ENSRNOT00000019057 3 1 1 149 2 142264354 142264372 CAGTAGGAAGAGTGGCTGG 60 142429882 142460812 TTTCACACTTGCCCAAGTC 59 NA Rattus norvegicus 81 Rad51ap1 ENSRNOG00000059878 ENSRNOT00000088333 1 1 1 80 4 159472939 159472957 AACCAGTGCAGAAGAAACC 58 159471503 159472895 CTGAAGTCACTGATGCCTC 58 NA Rattus norvegicus 81 Golph3 ENSRNOG00000012186 ENSRNOT00000017276 1 1 1 95 2 62381119 62381142 GAGATGTTCTTCTTGATGAAGCTC 60 62381193 62386857 ACGTCTCACCACTAAGTAACTC 60 NA Rattus norvegicus 81 Spata17 ENSRNOG00000002504 ENSRNOT00000073142 3 1 1 80 13 105636101 105636120 GAAATTCGAGAATGATGCGG 58 105635221 105636059 TTCAAGTGCCTGATATAGGC 58 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 1 2 2 80 1 266113999 266114018 TACGTGGACACCTTTGTCTC 60 266114056 266114523 ATTCCAGAGGAGAAATACAGTCTC 60 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 3 2 2 82 1 266115658 266115676 CTTGGGTCAGTATCTCCGG 59 266115721 266117042 AGTGAAACACCTGTACCAGG 60 NA Rattus norvegicus 81 Rpap3 ENSRNOG00000053405 ENSRNOT00000083926 3 1 1 80 7 139185159 139185180 AAAGTGTTAGAACTGGAACCAG 59 139183162 139185120 TTCCTTCGATGTTAAAGCCTG 59 NA Rattus norvegicus 81 AABR07061158.1 ENSRNOG00000043460 ENSRNOT00000066666 2 1 1 114 4 107443763 107443807 CTTTGCCAAGAAGTGTCAC 57 107443667 107443685 ACTCCTCTAACTGGGACAG 58 NA Rattus norvegicus 81 Zfyve26 ENSRNOG00000059875 ENSRNOT00000079351 2 1 1 80 6 102436415 102436433 ACCCTGTCTAGGTCATCGT 60 102432994 102436372 GACTAAGGCACTTCCAGGAG 60 NA Rattus norvegicus 81 Abcd4 ENSRNOG00000011964 ENSRNOT00000016040 2 1 1 80 6 108316475 108316786 GGATTGGAACTGGTATGATGTC 59 108316416 108316435 TTAGGCTGCAGGTAGAAGAG 59 NA Rattus norvegicus 81 AABR07061362.1 ENSRNOG00000051562 ENSRNOT00000080213 1 1 1 80 4 119465632 119465667 CTACTACATGTACCTACCTTGTC 58 119465708 119465729 GAGGCTTATGTTTGTACTTTGC 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 3 1 3 101 14 85968304 85968325 AAGTGGAATTACTGGTCAAAGG 59 85965407 85967754 ATTCCAAATCTGCAATTGCC 58 NA Rattus norvegicus 81 Csmd3 ENSRNOG00000004937 ENSRNOT00000057108 1 1 1 80 7 86681797 86684377 GGATGGATTTGTTTCTGCTG 58 86681736 86681755 AATTGCCCATAATCTTTGCC 57 NA Rattus norvegicus 81 Slc39a8 ENSRNOG00000012508 ENSRNOT00000033413 3 1 1 80 2 241089632 241090826 CAGATATGTTTCCAGAGATGAACG 60 241090862 241090883 GGATCATGAAGAAGGTGAAGTC 59 NA Rattus norvegicus 81 Ccer2 ENSRNOG00000046971 ENSRNOT00000075601 3 1 1 86 1 86938607 86938625 CTAGCAGAGGTGGTGATGG 60 86938672 86938998 CTCGAATATCTCTTTGTGGAGC 59 NA Rattus norvegicus 81 Dazap2 ENSRNOG00000004628 ENSRNOT00000006239 2 1 1 80 7 142239189 142240358 TGAACAGCAAAGGTCAATATCC 59 142240395 142240417 GTAAGGTCTGAGGATATACTGGA 59 NA Rattus norvegicus 81 Dtx3l ENSRNOG00000023400 ENSRNOT00000039215 3 1 1 81 11 67762964 67763749 TGGCATACAAACAAAGGAGC 59 67763791 67763811 CGCATTATCAGGCAAATATGC 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 3 2 3 80 7 143493425 143493809 TGAAGAAGGATGTGGATGGA 59 143493364 143493384 AGTTGATTTCATCAGTCAGGC 59 NA Rattus norvegicus 81 Snrnp48 ENSRNOG00000013756 ENSRNOT00000018508 2 1 1 80 17 27252395 27273477 TGACTGTTATAGCCAAAGACTG 58 27252336 27252355 GTGAGGTCACAAACAGATCG 59 NA Rattus norvegicus 81 Olr581 ENSRNOG00000046632 ENSRNOT00000049950 3 1 1 60 3 75810285 75810305 ATTATCCCGATGATGAACCCT 59 75810322 75810345 GAGCTTCTTTCACATCCTTATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ern2 ENSRNOG00000018974 ENSRNOT00000025699 1 1 1 80 1 192133159 192133798 TCTCCTTTGAGTTCCTAAACCT 59 192133100 192133123 GATAAGTGTCAGCTTTCTCTTCAG 60 NA Rattus norvegicus 81 Zfp593 ENSRNOG00000016392 ENSRNOT00000021937 2 1 1 164 5 152464668 152464686 CAGATGAAGGCCAAGAAGC 59 152464297 152464540 ATCGATGAAGTACCTCGCG 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792,ENSRNOT00000031331,ENSRNOT00000077458 1 3 3 80 6 108515970 108515988 CCTGGCTCCTACACTTGTC 60 108514934 108515932 CAGACACTCATTCATATCTACACAG 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 1 2 2 80 13 75178291 75180951 TCACCCATACTCAAGGTCAG 59 75180993 75181012 CCATAAGCGTACTCATCCCT 59 NA Rattus norvegicus 81 LOC100911107 ENSRNOG00000048358 ENSRNOT00000070876 1 1 1 80 17 32014981 32015000 GCATGGAGCATCTCATACAC 59 32014068 32014938 GCCAAGAACTCAGGAAGGA 59 NA Rattus norvegicus 81 Fam89b ENSRNOG00000024239 ENSRNOT00000016987 3 1 1 85 1 221086668 221087051 CAAGGAAATGGTGGGTCTG 59 221086601 221086619 GCTTGTAGTCCTGGATCGA 59 NA Rattus norvegicus 81 Ccr6 ENSRNOG00000012964 ENSRNOT00000017302 3 1 1 84 1 53066183 53087229 CCGGAACATTATTGGAAACGA 59 53066119 53066141 GGAAACATAGAGTAATCTGAGCC 59 NA InUTR Rattus norvegicus 81 RGD1563620 ENSRNOG00000028052 ENSRNOT00000033132 1 1 1 83 2 166348536 166348555 CTGAAGGGAAAGATTTCGGC 59 166348601 166349144 TGGCTATCACAAGGTGGTG 60 NA Rattus norvegicus 81 Cisd1 ENSRNOG00000000610 ENSRNOT00000000749 2 1 1 74 20 18501875 18501893 GGATAAGGCCGTGTATTGC 59 18506525 18506543 TTGTGCTTTATGTGAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Pafah1b2 ENSRNOG00000057102 ENSRNOT00000082508 1 1 1 80 8 50269805 50269823 AAACCCAGCAGCTATTCCA 59 50267413 50269764 AGAACAAACCTATTGTGCTGAG 59 NA Rattus norvegicus 81 Ass1 ENSRNOG00000008837 ENSRNOT00000012075 3 1 1 85 3 10333230 10333248 ATCTGTCTTCAAGGGCCAG 59 10329070 10333181 GTACGTTCATGCTCACCAG 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923,ENSRNOT00000012640 1 2 2 80 7 143224891 143224909 CAAGGCCCAGTATGAGGAC 60 143223159 143224847 TGCAGCTCCTCATACTTGG 60 NA Rattus norvegicus 81 Rap1a ENSRNOG00000032463 ENSRNOT00000047836 1 1 1 80 2 208206205 208206227 CAGCTCAGTCTACGTTTAATGAC 60 208203915 208206168 TCATTGGAACATCTTCTGTGTC 59 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942 2 1 2 144 8 50530865 50531439 CTAGCTACTCCAGGTGCAC 60 50530620 50530638 GAGGCTTGTTCCATGTAGC 59 NA InUTR Rattus norvegicus 81 Rn60_13_0836.1 ENSRNOG00000051271 ENSRNOT00000076141 3 1 1 80 13 78619993 78620207 TCTGAGAACTCATTTGGTGTC 58 78620248 78620267 GAACTCCAGGAAATGCTTCC 59 NA Rattus norvegicus 81 Zfp157 ENSRNOG00000001323 ENSRNOT00000030757 2 1 1 81 12 18476505 18476523 TCTTGAGGTTGGAGCATGG 60 18468406 18476461 ACTTCAAGAACACCTGGGAG 60 NA Rattus norvegicus 81 Tssc1 ENSRNOG00000009285 ENSRNOT00000060185 2 1 1 80 6 48127559 48127577 CAGCTGAAGTTTACCTCGG 58 48127621 48127640 TCGGAGGGTAGTATCACTG 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651,ENSRNOT00000071939 1 2 2 87 20 9335118 9335331 ACAACTACGACCTGGTCTC 59 9335380 9335400 TTATAATACCTCGACACGCTG 58 NA Rattus norvegicus 81 Jdp2 ENSRNOG00000008224 ENSRNOT00000011339 1 1 1 87 6 109474899 109499252 GAAGAGTGAGCTAGATGAGGA 59 109499301 109499319 CTTCTTGTTCCGGCATCTG 59 NA Rattus norvegicus 81 Jdp2 ENSRNOG00000008224 ENSRNOT00000011339 3 1 1 103 6 109474820 109474838 CTGACATCCGCAACATTGG 60 109474902 109499256 TTCTTCCTCATCTAGCTCACTC 59 NA Rattus norvegicus 81 Rad18 ENSRNOG00000005907 ENSRNOT00000066468 3 1 1 80 4 144596535 144600111 GCATCCTAAATCAGCTGCTG 60 144596474 144596493 AGTTTACTTGCTTCAAGGCG 59 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492,ENSRNOT00000017885 2 2 2 80 1 193142669 193143205 ACCTCACACCTCAGATTGAC 60 193143243 193143266 GGTTCAGATGGAATGTAATCAGTG 60 NA Rattus norvegicus 81 LOC100360940 ENSRNOG00000008548 ENSRNOT00000011308 3 1 1 85 5 147607721 147607741 CAGAATTGATAAGACCATGGC 57 147607785 147607842 CTCTGATTTCTGAGCAATAGGA 58 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558,ENSRNOT00000010991 3 3 3 80 8 68154115 68159497 ATGCTTATATGGCACCCGA 59 68154053 68154073 TGAAAGAGATCCCTAAGCTCC 59 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 3 2 2 90 10 45313499 45313617 CCTTGACCAGGAAGGAGAG 59 45313671 45313689 ATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Txn1 ENSRNOG00000012081 ENSRNOT00000016447 3 1 1 81 5 75057680 75057698 GACAAGCTTGTGGTAGTGG 59 75056754 75057637 CACAGAGGGAATGAAAGAAGG 59 NA Rattus norvegicus 81 Sftpc ENSRNOG00000011177 ENSRNOT00000015035 3 1 1 81 15 52212085 52212443 ATTCAAGAACTTCCAGGCCA 60 52212023 52212041 AGAATCGGATCCAGCACTG 60 NA Rattus norvegicus 81 LOC100363368 ENSRNOG00000024504 ENSRNOT00000036754 1 1 1 85 15 18920486 18921935 AAGGAACAGAACTGCACTG 58 18921984 18922002 TAACGTTGCAGTTCCTCTC 58 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 1 2 2 80 7 70961964 70962146 AGCTCAGATATGGTGTATCCTC 59 70962184 70962205 TACACTCATGGACTCTTCTAGG 59 NA Rattus norvegicus 81 Gpr165 ENSRNOG00000012995 ENSRNOT00000067298 1 1 1 80 X 65799243 65799632 GGAATTTGGCAACACAACAG 59 65799673 65799693 TCAAGGTATTTCCATGTGGAC 58 NA Rattus norvegicus 81 AABR07060778.1 ENSRNOG00000005630 ENSRNOT00000007437 1 1 1 60 4 93405881 93405899 GGATGGTGGTGAATGAAGG 58 93405839 93405861 ACGTGGAGGTGAATATGATAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911558 ENSRNOG00000045991 ENSRNOT00000075695 3 1 1 90 18 35069406 35071501 TTTAGCAGGTAACACTACAGC 58 35067869 35067888 CACAGGATCATAATCCCTGG 58 NA Rattus norvegicus 81 Cyp17a1 ENSRNOG00000020035 ENSRNOT00000027160 1 1 1 80 1 266424807 266424827 AGGTGATAAAGGGTTATGCCA 59 266424423 266424765 GACTGTCGAACTTCTCCCT 59 NA Rattus norvegicus 81 Rn60_X_0660.5 ENSRNOG00000051113 ENSRNOT00000076162 1 1 1 60 X 65149393 65149411 CTCAAAGTACCTCCTGCCA 59 65149434 65149453 GAGTTGCTGTTTGTCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bex2 ENSRNOG00000032729 ENSRNOT00000042126 2 1 1 162 X 106557464 106557881 ATAGGCCCAGGAGAAATGG 59 106557320 106557339 GCACGTAGTATTCTCCAGCT 60 NA InUTR Rattus norvegicus 81 Olr526 ENSRNOG00000050654 ENSRNOT00000045439 2 1 1 60 3 74411716 74411739 CTGACAGATTCCAAAGAGTTACAG 60 74411755 74411776 CCAGGTATATCAGCAGAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd6 ENSRNOG00000014485 ENSRNOT00000019735 1 1 1 80 1 31587596 31590927 GTCTTGCAGAGGTTGACAG 59 31590970 31590989 ATACTGCTCGTAAGACACCT 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000087695 3 2 4 80 20 2503942 2503960 TGTGCAATTTCCCATACCC 58 2504001 2505251 CTGAAGTTTCTCCTTGTACTCC 59 NA Rattus norvegicus 81 Kif11 ENSRNOG00000056069 ENSRNOT00000079726 1 1 1 80 1 256047980 256049853 GAATGCTTACTCCAGTCGT 57 256049895 256049915 AGCTCTTCTCCATCAATTGTC 58 NA Rattus norvegicus 81 Akr1c19 ENSRNOG00000038319 ENSRNOT00000058351 2 1 1 80 17 69659586 69661736 CTATAAACCGGAAGAGGTTCCT 59 69661777 69661795 TCAATATGGCGGAACCCAG 60 NA Rattus norvegicus 81 Tmem86a ENSRNOG00000013663 ENSRNOT00000018688 3 1 1 138 1 103175366 103176033 CGGATACTTTGAACATGGTCTC 59 103176132 103176150 GTAGAGGAGGGCATAGCAC 59 NA Rattus norvegicus 81 Pgr ENSRNOG00000006831 ENSRNOT00000038313 1 1 1 80 8 7168835 7168853 CAGTCTCAACCAACTAGGC 58 7168897 7178329 TGTAAGTTCCGGAAACCTG 57 NA Rattus norvegicus 81 Pgr ENSRNOG00000006831 ENSRNOT00000038313 2 1 1 80 8 7132078 7132096 ATCTGGCTGTCACTATGGT 58 7132140 7150109 TAGTTATGCTGCCCTTCCA 58 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191,ENSRNOT00000011073,ENSRNOT00000084004 1 3 3 80 10 12047004 12048396 CAGGCCCAGAACATTTGAC 59 12048437 12048458 TCACACCCTTGTCCTTATTCTC 60 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 3 2 2 114 6 109097473 109103609 CAAGTACACTCAGGCTGAG 58 109097377 109097395 CATAAAGCGGACCTTGGAG 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000008319 2 7 9 98 4 14151452 14151470 CGTTATTGGTGCTGTCCTG 59 14151531 14159594 TCTTCAAGGACAACTTCCCT 59 NA Rattus norvegicus 81 Vom2r30 ENSRNOG00000038479 ENSRNOT00000046047 1 1 1 80 1 74596524 74596545 TAGGATTGAATTGGATGTCGTC 58 74594766 74596485 AGGAAATCTGAAGGAAACGTG 59 NA Rattus norvegicus 81 3082ex4-5 ENSRNOG00000052365 ENSRNOT00000084179 2 1 1 60 20 2493713 2493731 CATGTGACCCATCATCCCA 60 2493755 2493773 AATTCAGCAGGGTAGAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd5 ENSRNOG00000033206 ENSRNOT00000041163 3 1 1 80 6 108099335 108099353 GGAACAAACACCTAAGGGC 59 108098680 108099296 CCCAAGTAACTATGTGTATAGAGC 59 NA Rattus norvegicus 81 LOC100363333 ENSRNOG00000032647 ENSRNOT00000041124 3 1 1 83 14 15950499 15951282 ATCAAGTCCTAGGGTCCCT 59 15951327 15951347 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 AABR07061048.1 ENSRNOG00000049501 ENSRNOT00000073076 2 1 1 60 4 103145009 103145028 CTGCTTATCAGCATTGGAGG 59 103144968 103144987 GTACCAGGCTCTGACTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgdrl ENSRNOG00000031535 ENSRNOT00000042545 3 1 1 91 15 18095201 18095219 CGAATCCTTTGGAGGAGCT 60 18089299 18095149 AGCACGATAAATTAAAGGCAGG 60 NA Rattus norvegicus 81 Stxbp2 ENSRNOG00000000994 ENSRNOT00000001322 1 1 1 80 12 2184574 2184594 CCCGCTATTACATGAACTCAC 59 2184633 2184735 GTCTCATACCTGTATGTGTCCT 59 NA Rattus norvegicus 81 Rgag4 ENSRNOG00000045779 ENSRNOT00000073685 2 1 1 60 X 71959424 71959442 CACATGAAGGCTTTCCCAG 59 71959382 71959401 CTTCCTCCTTCCTCATGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scarb2 ENSRNOG00000002225 ENSRNOT00000003052 1 1 1 80 14 17111894 17113568 CTCAATGAGAGTGTTCTCATTGAC 60 17113604 17113625 GTTGGTGACAATCAAAGTTGTG 59 NA Rattus norvegicus 81 Il2ra ENSRNOG00000047647 ENSRNOT00000073144 2 1 1 80 17 70508418 70508440 CTAGTGAAGAATCTCAAGGAAGC 59 70507666 70508378 GTGAGAAGTCTGTGTTGGG 58 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 2 2 2 60 15 19727830 19729374 CTGTACTGCGGACTTAAATAAAGG 60 19727793 19727812 ACCAGTCTCTGTCAACTGAC 59 NA DesignNoJunction Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 2 1 2 68 15 2813664 2966182 AGTATCTGAGAAGCCAGCC 59 2813614 2813634 TGTACATCATGTTACTGTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000054828,ENSRNOT00000028651 2 3 3 105 1 221884359 221884377 CGGCAAATATCACGTGGTG 60 221884445 221888108 GTTATCAAAGTTCCCTGCCG 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 3 2 2 80 14 14953724 14953742 CAAGTGACCAGTTAGCTGC 59 14951700 14953682 CAAATGGACCCAGATTCAGTG 59 NA Rattus norvegicus 81 Rn60_20_0031.1 ENSRNOG00000039966 ENSRNOT00000061411 3 1 1 77 20 3076643 3076661 TTCTGCTGCCTTCTTTGTC 58 3079187 3079205 CAGAACTGTGTAGGTGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Krt18 ENSRNOG00000047393 ENSRNOT00000073951 1 1 1 80 7 143631159 143631787 ATCATGAGGAGGAAGTCCA 57 143631831 143631849 GAGATTTGGGAGCATCCAC 58 NA Rattus norvegicus 81 RGD1563334 ENSRNOG00000050089 ENSRNOT00000071779 2 1 1 89 5 162599653 162599671 CCCAAGACAACCTCCTCTG 60 162597219 162599601 GTTGTGGTAACAATCCAGGC 60 NA Rattus norvegicus 81 Ttc27 ENSRNOG00000042932 ENSRNOT00000006505 1 1 1 80 6 21815431 21815454 GATATTTGAGAAGCTGGAGATGTG 60 21797130 21815392 ATTTCTTCTGCCTTCCCGT 59 NA Rattus norvegicus 81 RGD1559644 ENSRNOG00000042808 ENSRNOT00000068281 2 1 1 80 5 162750980 162750999 CATCTACCCTGAAGCATCCA 59 162742600 162750943 CTAGTATGGTTCCCAAAGTTATCAG 59 NA Rattus norvegicus 81 Rn60_X_0675.1 ENSRNOG00000051104 ENSRNOT00000076769 2 1 1 60 X 66667512 66667535 CAGTTAAGTCACAAGAAGGATCAC 60 66667475 66667495 AAGATACCTCCAATTCCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0677.1 ENSRNOG00000051129 ENSRNOT00000075885 2 1 1 60 X 66837057 66837078 GAACGCCTAAATAAACTCAGAC 58 66837018 66837039 TCAAGTTGGTAAGAGTTTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn3 ENSRNOG00000009785 ENSRNOT00000012985 2 1 1 80 15 23560373 23561881 AAACCCTGATACACTGTTATGG 58 23562801 23562823 TTGAGTCAGACAAGTATAGGAGG 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008,ENSRNOT00000089433 2 3 3 80 3 113418581 113418782 CAACTGGTTCAGCTATGAGGA 60 113418521 113418539 GCAACTTTGACCCAGAAGG 59 NA Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000035910 2 1 2 80 1 227455870 227455889 CCTTGGTAAACCCATACCCA 59 227454480 227455830 AGTTAATGAACAAAGCAGAGCC 60 NA Rattus norvegicus 81 LOC100909648 ENSRNOG00000048522 ENSRNOT00000074512 1 1 1 110 13 48368948 48368967 AGATGACCTTTGTCATCGTG 58 48369037 48377758 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191,ENSRNOT00000084075,ENSRNOT00000077175 3 3 3 81 7 141349513 141350276 GAGCAGAGGCTCATCTACC 59 141350319 141350339 TGTAGGAGTCGAAGAAATCCG 60 NA Rattus norvegicus 81 LOC361914 ENSRNOG00000028985 ENSRNOT00000042494 2 1 1 80 2 88454304 88475535 ACCAAGACCTTATAAGGTACG 57 88454244 88454263 ATCACTGGTGTGAGAATGAG 57 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933,ENSRNOT00000084640 2 2 2 80 5 117588833 117590172 TAACACCCTGAGGGAACTC 58 117590215 117590234 CCCAGAATACACTGTAGCAC 58 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486,ENSRNOT00000090739 1 2 2 88 5 107747693 107747711 GAAGTCATTGCAGTGCCAG 60 107747761 107748549 AGCCATTTCTATGAGGACCTC 59 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762,ENSRNOT00000077544 1 2 2 80 1 245955089 245955109 CTGATTGGCAATTCGATGGAG 60 245937615 245955047 CGCCATTTCAATTGTCGCT 60 NA Rattus norvegicus 81 Rnf224 ENSRNOG00000040284 ENSRNOT00000062001 2 1 1 60 3 2456009 2456027 AGGTCTCCACACCTTAGAG 58 2455967 2455985 GATGATGCAGTCATTCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 3 4 4 82 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000071332 3 1 3 68 19 49518587 49518605 CTCCCTAGACACTTCACGG 59 49510927 49518555 TAACATCTTCTTCCCGCCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 RGD1310371 ENSRNOG00000012301 ENSRNOT00000016433 2 1 1 86 1 145930092 145930111 GATACCATGTGGTGTGACTG 58 145929042 145930045 CAGCTGTTAGCATTGTTACTC 57 NA Rattus norvegicus 81 Prnd ENSRNOG00000021260 ENSRNOT00000050900 3 1 1 60 3 124545582 124545600 GGGCAACAAGTACTATGCG 59 124545624 124545642 GCCTTCGTAGTAGATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3592 ENSRNOG00000035625 ENSRNOT00000053748 1 1 1 60 6 133884223 133884242 GTTGTCCGTGAATGATTCGT 59 133884182 133884202 CTTGAAGAGAAGTTGTTCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3592 ENSRNOG00000035625 ENSRNOT00000053748 2 1 1 60 6 133884224 133884243 TGTTGTCCGTGAATGATTCG 59 133884183 133884203 TTGAAGAGAAGTTGTTCGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005844.1 ENSRNOG00000034038 ENSRNOT00000027919 1 1 1 80 1 203224371 203226568 AGGAGTGGATGCATACGAG 59 203226609 203226630 AGAACTGAATTTAAAGCGGGTG 60 NA Rattus norvegicus 81 Pip4k2b ENSRNOG00000013030 ENSRNOT00000017989 1 1 1 80 10 85672485 85683877 TGAACCACACGATCAATGAG 58 85672424 85672445 TCTTGCTGTAAGCTTTGAAGTC 59 NA Rattus norvegicus 81 Ksr2 ENSRNOG00000028630 ENSRNOT00000046190 3 1 1 80 12 44554042 44555401 CAAGAGATTGTTAAGGGCATGG 60 44553983 44554007 GTAGAAGACATTCTTCGATTTGAGG 60 NA Rattus norvegicus 81 Pin4 ENSRNOG00000050051 ENSRNOT00000073157 2 1 1 86 X 72004566 72007658 AAAGGAGGGAAAGGAGGTG 59 72007708 72007726 CTTTACTGCATTGCCACCA 59 NA Rattus norvegicus 81 Olr417 ENSRNOG00000007954 ENSRNOT00000010450 2 1 1 60 3 20965790 20965808 GACTTCCTTCTTCTGGGAC 57 20965829 20965850 AGATGCCAAATAGAAGAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr417 ENSRNOG00000007954 ENSRNOT00000010450 3 1 1 60 3 20965790 20965810 GACTTCCTTCTTCTGGGACTC 60 20965829 20965850 AGATGCCAAATAGAAGAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncbp2 ENSRNOG00000001746 ENSRNOT00000002381 3 1 1 81 11 72075652 72075672 AGAAGATCATCATGGGTCTGG 59 72073875 72075614 GCATCTGCTCTTGAATAGTATTCC 60 NA Rattus norvegicus 81 Tnfrsf25 ENSRNOG00000021814 ENSRNOT00000055466 2 1 1 80 5 169291439 169291457 TCGTTCCTTCTTGGGACTG 59 169291501 169291722 AGCTATGTCTGCAGTGACC 60 NA Rattus norvegicus 81 Ahrr ENSRNOG00000014721 ENSRNOT00000019806 2 1 1 80 1 31693788 31694041 ACTCAATTACTTAGCAGGAAGG 58 31694082 31694100 GTCCAATGGCTCCTATCTG 57 NA Rattus norvegicus 81 Stbd1 ENSRNOG00000002218 ENSRNOT00000003020 1 1 1 90 14 16977995 16979486 CAAAGCAGAGCATCTTCGAG 59 16977924 16977942 ATTCTGCAGTCTCTGTGCT 59 NA Rattus norvegicus 81 AABR07001657.1 ENSRNOG00000052093 ENSRNOT00000072895 1 1 1 60 1 54853965 54853983 CCTCAAGAGACAACAGTGG 58 54853923 54853946 GATCCTCATCATGATTTCTACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grxcr2 ENSRNOG00000039325 ENSRNOT00000060260 3 1 1 143 18 36314971 36321998 CGAATGACCATAAGCCTCC 58 36314846 36314864 ACTCTTCTTCAGCCACCTC 59 NA Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 2 1 1 62 13 36265350 36265368 GGTTACCTCGATCCCTTCC 59 36258698 36265325 GACTGCACAAAGCTGAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Rchy1 ENSRNOG00000002546 ENSRNOT00000003470 2 1 1 80 14 17621887 17626603 TGTGGGATTTGTAGGATTGGT 60 17626645 17626663 TCGAAGAGTCATGGCTAGG 59 NA Rattus norvegicus 81 Pramef25 ENSRNOG00000027000 ENSRNOT00000037478 1 1 1 80 5 162416673 162416691 AGGATGATGTTGCAAGCTG 59 162416130 162416631 TTTAAGCTTCTGCCTTCTTGG 59 NA Rattus norvegicus 81 Treml2 ENSRNOG00000013554 ENSRNOT00000042404 2 1 1 80 9 14661095 14661114 TGACATTTCTTCCAGCACCT 60 14660824 14661055 CCAAGTTGTATCTTCCCATGTG 59 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 2 1 1 60 1 255801696 255801714 GGCCAAGATTAAGGCTTGG 59 255801737 255801863 TCGTTTCAATAGCTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Hdac11 ENSRNOG00000006824 ENSRNOT00000008962 3 1 1 80 4 122793063 122795930 ATCGCTTTGCTAAAGAGGC 59 122795973 122795992 CCACCTTCTCCAGATACTCC 59 NA Rattus norvegicus 81 Rhox13 ENSRNOG00000028050 ENSRNOT00000035489 3 1 1 80 X 124270906 124274049 GAAGTCAAAGTGAAGGTGTGG 60 124274088 124274109 CATATTTCTCAGCATTGCTCGT 60 NA Rattus norvegicus 81 Hspb7 ENSRNOG00000029079 ENSRNOT00000051317 1 1 1 60 5 159968937 159968955 CTCCAACAACCACATCGAG 59 159970201 159970220 GTTCATGACTGTGCCATCAG 59 NA DesignNoJunction Rattus norvegicus 81 Hspb7 ENSRNOG00000029079 ENSRNOT00000051317 2 1 1 62 5 159968940 159968958 CAACAACCACATCGAGGTG 59 159970207 159970225 AAGGTGTTCATGACTGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Asb13 ENSRNOG00000017967 ENSRNOT00000024200 1 1 1 81 17 70226278 70233962 TGGGAGATGTGGGTTTCTG 59 70226215 70226233 AGCTGCTGAAGCTGTAGAC 60 NA Rattus norvegicus 81 Asb13 ENSRNOG00000017967 ENSRNOT00000024200 2 1 1 83 17 70226274 70233958 AGATGTGGGTTTCTGGGTG 60 70226209 70226227 TTGATCAGCTGCTGAAGCT 60 NA Rattus norvegicus 81 Srrm2 ENSRNOG00000058561 ENSRNOT00000091287 1 1 1 80 10 13150843 13150861 CCTAGTAGCCCAGATCCCT 60 13150904 13153355 TCGAACTGCAGATTTCTCCT 59 NA Rattus norvegicus 81 Hoxc10 ENSRNOG00000016149 ENSRNOT00000021647 1 1 1 96 7 144578321 144581697 AGCTAAAGAGGAGATAAAGGC 57 144581753 144581773 CGTCTGGTGTTTAGTATAGGG 58 NA Rattus norvegicus 81 LOC100365887 ENSRNOG00000047639 ENSRNOT00000072741 2 1 1 60 3 76256062 76256083 TATTGAGCTTCACAGACTACCC 60 76256023 76256046 ATGAAGAGAAAGACTAGGAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ero1l ENSRNOG00000006462 ENSRNOT00000009404 1 1 1 80 15 19639084 19640792 GCTACAAGTATTCCAAGGAAGC 60 19639025 19639043 TCAGAGATTCGTCCACTGC 60 NA Rattus norvegicus 81 LOC688684 ENSRNOG00000008516 ENSRNOT00000011244 3 1 1 60 5 125345414 125345432 ATTGCTCACAATGTGTCCT 57 125345372 125345391 CGTTGGGATTAGTGACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnase1l3 ENSRNOG00000009291 ENSRNOT00000012532 2 1 1 80 15 18719680 18720526 TTCCTCTACAAGGAGAAGCTG 59 18720568 18720586 AAACACGTCTGTGTCTCCA 59 NA Rattus norvegicus 81 Tk1 ENSRNOG00000047314 ENSRNOT00000071420 2 1 1 80 10 106819238 106819334 CCTGGAGAAAGAGGTGGAG 59 106819176 106819199 GAAGACTTCTTAAAGTAGCACAGG 60 NA Rattus norvegicus 81 Zfp473 ENSRNOG00000026572 ENSRNOT00000037973 3 1 1 106 1 100739047 100741342 CAGTGATGAAGCGACTGAG 58 100738959 100738977 CAAAGTTGAGTTCCTCCGT 58 NA Rattus norvegicus 81 Prdm5 ENSRNOG00000023679 ENSRNOT00000009569 1 1 1 80 4 96762585 96764474 TGTTAATCCACAACAGTGAGAG 58 96764513 96764533 GCACATTTAACGTGTCTTTCC 59 NA Rattus norvegicus 81 Atg4a ENSRNOG00000050960 ENSRNOT00000074776 3 1 1 81 X 112377445 112396706 AGAACCAGTGGTATTGCCT 59 112396750 112396769 GTATCAACGAAGGTCTGGGT 60 NA Rattus norvegicus 81 Samd15 ENSRNOG00000050413 ENSRNOT00000074634 3 1 1 130 6 111224618 111224637 CAGGACGTAGACATCCTAGG 59 111225596 111241159 AGATGGGAGCCTTCATGTC 59 NA InUTR Rattus norvegicus 81 LOC100363914 ENSRNOG00000048882 ENSRNOT00000071450 3 1 1 81 12 2948849 2950292 TCATTGTCAAAGGCACTGAG 59 2950336 2950354 ACCTGATCCAGTTTCTGGT 58 NA Rattus norvegicus 81 Olr633 ENSRNOG00000049129 ENSRNOT00000040604 1 1 1 60 3 76751996 76752017 GTAATGAGCCAACGTATCTGTG 60 76752038 76752056 GGATACAAGACCCTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249,ENSRNOT00000000474 3 2 2 80 1 167071801 167072116 CCTTTCCTTTAAGGTGCGAG 59 167072159 167072177 CTGTGCTCCTCTATCAGGT 58 NA Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 3 2 2 81 17 78775619 78775641 GACTATGAGTCTGATGAGTTCAC 59 78775679 78778109 TTGGGTCACAACTATGATTCAC 59 NA Rattus norvegicus 81 Olr566 ENSRNOG00000053263 ENSRNOT00000079476 2 1 1 60 3 75519105 75519125 ATTGACAAACTGCTGTCTCTG 59 75519144 75519165 ATATCAGTGGATTGAACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdga2 ENSRNOG00000000618 ENSRNOT00000000767 1 1 1 80 6 88834712 88834734 GCCGATATTACTGTAAAGCAGAG 60 88757910 88834675 CATCCAAGTAGTACACATCCAC 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000048109 3 1 4 109 18 6778976 6778994 CTTCTACATCACTGCGCAG 59 6776922 6778906 TATAATTGATCGTGGTGACTCC 58 NA Rattus norvegicus 81 Dusp6 ENSRNOG00000023896 ENSRNOT00000037844 3 1 1 95 7 41476895 41477921 TTTCATAGATGAAGCCCGAG 58 41477978 41477997 ATAAGGTAAGCCACTGTCAC 57 NA Rattus norvegicus 81 Pitx3 ENSRNOG00000019194 ENSRNOT00000026013 1 1 1 80 1 265888916 265888934 CATTGTCAGATGCAGGCAC 60 265888675 265888872 CCTTCTCCGAGTCACTGTG 60 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373,ENSRNOT00000073428 2 2 2 80 6 111273478 111273499 ACAGGAGCAAAGTAGATAAAGG 58 111272227 111273438 TCTTCCATCGAATTTGCGAG 59 NA Rattus norvegicus 81 Pinlyp ENSRNOG00000019862 ENSRNOT00000026946 2 1 1 98 1 81406857 81407123 GCAGGCTGGTATTATCAACAC 60 81406779 81406797 TAGGAAGCAGAAGGGACCT 60 NA Rattus norvegicus 81 Wwp1 ENSRNOG00000006328 ENSRNOT00000009047 2 1 1 80 5 33652681 33652702 AGTTGTCCTTGATGGATTAGTG 58 33652533 33652643 TTCTGCTGAATTTCTATGGGTG 59 NA Rattus norvegicus 81 AABR07072118.1 ENSRNOG00000047955 ENSRNOT00000049304 1 1 1 80 10 44187969 44187987 CACTCCGTTATCCTGTCCT 59 44188031 44188050 ACATGAAGCCATCCAGGAG 60 NA Rattus norvegicus 81 Rab18 ENSRNOG00000018972 ENSRNOT00000025828 3 1 1 80 17 59861226 59869924 GCAATATGGGATACAGCTGG 59 59869964 59869985 TAATATAACTCCCTGTGCACCT 59 NA Rattus norvegicus 81 Mapk4 ENSRNOG00000015401 ENSRNOT00000047271 1 1 1 80 18 69904106 69904124 CTTTGTCAGCAGCACTTGG 60 69899971 69904063 AGAAAGTCAATGGCTTCACG 59 NA Rattus norvegicus 81 Calhm1 ENSRNOG00000030682 ENSRNOT00000044519 1 1 1 102 1 266918527 266918545 ATCTACGATGGGAACTGGC 59 266916770 266916788 GTAATGTGGTCAGCAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Ttll5 ENSRNOG00000009318 ENSRNOT00000012895 3 1 1 80 6 109742407 109742425 ATTCGGAACCAGTTCATGC 59 109742467 109744206 TTCTGGATCATCACAACTCAC 58 NA Rattus norvegicus 81 Pcyt2 ENSRNOG00000036684 ENSRNOT00000054952 2 1 1 80 10 109789914 109789933 TACAAGGGCAAGAACTACCC 60 109789664 109789872 CACTTCTGAAACATACCGGC 59 NA Rattus norvegicus 81 Olr154 ENSRNOG00000059092 ENSRNOT00000087952 3 1 1 60 1 169576272 169576293 TTACTGTAGCACTTTCAGTCAC 59 169576309 169576332 AGGATATAGGAAGTAGCAATGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000064310 1 1 2 80 5 159735504 159735696 GCGTGAGTTTGCTAATTCTG 58 159735739 159735757 ATCTCTGGTGACAGTTGCT 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000025731,ENSRNOT00000051067,ENSRNOT00000025700 1 4 4 80 17 70701531 70701549 CCTACCCTGAGGAGTATGC 59 70701592 70702909 CAAGATCCTGGTAGGACTCG 59 NA Rattus norvegicus 81 Smek2 ENSRNOG00000003712 ENSRNOT00000005170 1 1 1 80 14 113609003 113609384 AGAAACTGAACAGTGTGCC 58 113609426 113609446 TTTCTTCATCCTCTTCCAAGG 58 NA Rattus norvegicus 81 Foxd2 ENSRNOG00000007759 ENSRNOT00000010201 1 1 1 60 5 133709669 133709688 GAGATCATGTCCTCCGAGAG 59 133709628 133709646 CGTCTATATCTGCGTCGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725,ENSRNOT00000031946,ENSRNOT00000059545 3 3 3 86 7 27262945 27267175 TCCATTCTCAGAATCAATTCCC 58 27267222 27267240 GATCAGAGTGGACTTTCCG 58 NA Rattus norvegicus 81 Lgsn ENSRNOG00000012205 ENSRNOT00000016316 3 1 1 86 9 37477085 37477104 CCCAAGATCAGATACCAGTG 58 37477152 37483653 GAGTGTGATCAGTATTCGGG 58 NA Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000077016 1 1 2 63 12 24651467 24651485 TCTGCTTCAAGATGAGCCC 60 24651512 24655701 CTCCATCTGGACCTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000077016 3 1 2 65 12 24651465 24651484 GATCTGCTTCAAGATGAGCC 59 24651512 24655701 CTCCATCTGGACCTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430,ENSRNOT00000028570 1 2 2 86 1 101717013 101717318 AAGGAGAAGTGCAGTTTGG 58 101716945 101716966 AGGTGATAAACAGGAAGTTCTC 58 NA Rattus norvegicus 81 Slc25a25 ENSRNOG00000014338 ENSRNOT00000020206 1 1 1 80 3 11445273 11445291 GATCCACGAAAGGCTAGTG 58 11445124 11445230 GTCTTCAGAACCTCCATTGG 58 NA Rattus norvegicus 81 Slc25a25 ENSRNOG00000014338 ENSRNOT00000020206 3 1 1 85 3 11445272 11445290 ATCCACGAAAGGCTAGTGG 60 11445118 11445224 ATTCGGGTCTTCAGAACCTC 60 NA Rattus norvegicus 81 Scfd1 ENSRNOG00000031203 ENSRNOT00000040548 1 1 1 80 6 72130336 72132546 AACCCGTATGGAAGGTACTC 59 72132588 72132607 CTCTCAGCTCCTTCACAGAC 60 NA Rattus norvegicus 81 St6galnac2 ENSRNOG00000012083 ENSRNOT00000016622 3 1 1 80 10 105659826 105659846 AATGGAGGAATTCTGAATGGG 58 105659177 105659784 TATGGCGCCATTGATTCTG 58 NA Rattus norvegicus 81 Cnot6l ENSRNOG00000002075 ENSRNOT00000002843 3 1 1 80 14 15124960 15124978 GGGAGTACAGGAAGAAGGG 59 15125020 15127154 CTGTTTCCACTTCCTGAAGAC 59 NA Rattus norvegicus 81 AABR07040617.1 ENSRNOG00000043306 ENSRNOT00000067828 3 1 1 80 X 106234723 106234745 GTAGTAGACATTTGTGTCCAGAC 59 106234888 106235546 TTCCACTTCAATGGCTTCCT 60 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283,ENSRNOT00000090375 2 3 3 80 1 215277827 215281732 GCAAGATAGGATGGACAAATCAG 60 215277769 215277787 ACTGAGTCCACTTGTGAGC 60 NA Rattus norvegicus 81 Dcn ENSRNOG00000004554 ENSRNOT00000006070 1 1 1 80 7 38769054 38770026 TTGTCATAGAACTGGGCGG 60 38770070 38770088 ATCCGAGACCCTTCATTCC 59 NA Rattus norvegicus 81 Dner ENSRNOG00000016640 ENSRNOT00000022564 1 1 1 80 9 91993865 92006788 GGCAGAGTACAAAGGAACAC 59 91993804 91993823 TCACAGGTACCTCCATTCAG 59 NA Rattus norvegicus 81 Tmem229b ENSRNOG00000010646 ENSRNOT00000014132 2 1 1 81 6 102155475 102166220 AGACTGTGACAACAGGAGG 59 102155412 102155430 CATATAGGTACCAGCGGGA 58 NA InUTR Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 1 2 2 80 3 114034241 114034261 TTCCCAAGTCATCCTCTACTG 59 114032991 114034204 GGGCTAAGTTTGTAATAGTCAAGG 60 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 2 2 2 82 1 87167611 87167852 GCTTGTCACAGCATACCTC 59 87167547 87167565 CATGGAGGTCAGAAACACG 59 NA Rattus norvegicus 81 Cltc ENSRNOG00000004291 ENSRNOT00000005987 3 1 1 80 10 74039870 74039888 TAATCGCCCTTCTGAAGGT 58 74039225 74039826 ATGGCATCTGCAACTTGAG 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282,ENSRNOT00000051342 3 2 2 80 17 69391717 69391740 GAGTCCAGAAGATATGAAAGTCCT 60 69388578 69391679 GGGTGGCCTTCAAATATTCC 59 NA Rattus norvegicus 81 Eif3m ENSRNOG00000012738 ENSRNOT00000017409 3 1 1 80 3 94990270 94990715 AAAGTAGTTGTCAGTCACAGC 59 94990210 94990228 CCAGGCATTAAGAGTGTCG 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 2 2 4 80 2 182030322 182030340 CTCAGACGGAATACTGCCA 59 182029749 182030281 TGATCTCTTCACACTCTTTCCC 60 NA Rattus norvegicus 81 Mtg1 ENSRNOG00000018860 ENSRNOT00000025574 3 1 1 80 1 212615397 212615774 GAATCCAGGTATGTGAGCG 58 212615818 212615836 TCTCCACACTTTGAATCCG 58 NA Rattus norvegicus 81 Tmpo ENSRNOG00000008797 ENSRNOT00000012715 2 1 1 80 7 31851828 31852653 CATTGACAAGAGCTGAAGTGG 60 31851768 31851789 CATACGGGAACATTTCCTTCAG 60 NA Rattus norvegicus 81 Wfdc1 ENSRNOG00000015904 ENSRNOT00000021630 2 1 1 80 19 52326293 52326311 TGTGTTAAGCAACGTCGAC 59 52328964 52330934 CTTGGAGTCACCTTCTGGG 60 NA Rattus norvegicus 81 Wfdc1 ENSRNOG00000015904 ENSRNOT00000021630 3 1 1 81 19 52326297 52326315 TTAAGCAACGTCGACAAGC 59 52328966 52330939 ACATACTTGGAGTCACCTTCTG 60 NA Rattus norvegicus 81 Cabin1 ENSRNOG00000001237 ENSRNOT00000001659 1 1 1 80 20 13862166 13862185 CAAAGGGACATTGTCATCCG 59 13862222 13863216 CTTCAGGTTCTTATCAATTTCCTCC 60 NA Rattus norvegicus 81 Dhrs7 ENSRNOG00000005589 ENSRNOT00000007645 2 1 1 81 6 95531978 95536603 AGAAGATGCCTGGAGAATGG 60 95531916 95531935 CATGGGAACTTGTGTCAGTC 59 NA Rattus norvegicus 81 Cnga4 ENSRNOG00000017609 ENSRNOT00000023751 3 1 1 81 1 170243002 170243153 CAACCAAAGCCAGGAAGTG 59 170243197 170243216 GGGAAGACCATTGTGTTCAG 59 NA Rattus norvegicus 81 Tat ENSRNOG00000016348 ENSRNOT00000022721 3 1 1 80 19 41682492 41682510 TACCTATCCAGTCGGGAGG 60 41681186 41682451 TGTCAGAATGACATCCTTAGCT 59 NA Rattus norvegicus 81 Trdmt1 ENSRNOG00000026132 ENSRNOT00000038651 3 1 1 80 17 80837881 80838566 AAGTTTCTTCTACAAGAGGGC 58 80837821 80837839 ACGGAGACAACAGAAACTC 57 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494,ENSRNOT00000089524 3 2 2 80 3 97410981 97410999 TGCTCATGTCCTCAGAAGC 60 97411039 97411777 GATTTCCATGGAGCATTTAGAGG 60 NA Rattus norvegicus 81 Naa30 ENSRNOG00000014192 ENSRNOT00000020074 2 1 1 80 15 26034494 26034513 ATCTGTCTGAACCCTACTCC 58 26034555 26040079 CTACCATGGCCAAGAAACAC 59 NA Rattus norvegicus 81 Ube2o ENSRNOG00000011007 ENSRNOT00000014699 3 1 1 84 10 105518201 105518378 GCTCAACTGACAGTCAGTG 59 105518135 105518154 TAAATGATGCAGTTGGTGCC 59 NA Rattus norvegicus 81 Chmp3 ENSRNOG00000007356 ENSRNOT00000010253 1 1 1 80 4 99489422 99492371 AAAGAGATGATGAAGGCTGG 58 99492411 99492432 TTCCATTTCCTCTTGATCATCC 58 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 3 3 3 97 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671237 52675785 ATGGTAGTGCTCTTCTCGG 59 NA Rattus norvegicus 81 Scg2 ENSRNOG00000015055 ENSRNOT00000020219 1 1 1 80 9 85238717 85238858 ACCTACTTGAGAAGGAATTTGC 59 85238658 85238677 CAACCCATTTGGTTTCTCCC 60 NA Rattus norvegicus 81 Mir216a ENSRNOG00000035514 ENSRNOT00000053637 2 1 1 60 14 113112159 113112177 GCAACTGTGAGATGTCCCT 60 113112198 113112219 GCTCTGTTTAGCATAATCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp14 ENSRNOG00000023847 ENSRNOT00000051854 1 1 1 80 1 171326727 171326749 TAGGAGACAATGGAGTAAAGACC 59 171326789 171328937 AGGATTCCAACCTCAGCAC 60 NA Rattus norvegicus 81 Abhd12b ENSRNOG00000026855 ENSRNOT00000036933 2 1 1 80 6 92586247 92586266 TGCCATTGTCTTAGAAGCTC 58 92586307 92596218 GCGATTTCATAGAGCTTTAGC 58 NA Rattus norvegicus 81 Afp ENSRNOG00000002889 ENSRNOT00000003879 1 1 1 80 14 19154307 19154325 CTTTCCAGAAACTGCCGAG 59 19153128 19154265 GACACATCGTAGATGAACGTG 59 NA Rattus norvegicus 81 Col4a5 ENSRNOG00000018951 ENSRNOT00000064478 3 1 1 80 X 112932098 112932116 CCAGGAATTGGTCTTCAGG 58 112932159 112934683 TGGTATTCCATGTAAGCCAG 57 NA Rattus norvegicus 81 Olr162 ENSRNOG00000047589 ENSRNOT00000075826 1 1 1 60 1 169683496 169683515 CCAGCCTATGTACCATTTCC 58 169683536 169683556 AGTAGTTGCCAGACCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 3 2 2 80 6 26256994 26257012 TCGAGGAACCTTGGATGAG 59 26255680 26256950 CGGCTTTCCTCTGTAACTC 58 NA Rattus norvegicus 81 RGD1310110 ENSRNOG00000031849 ENSRNOT00000041420 2 1 1 80 15 26669066 26669084 AAGAACGAGTCCATCCCTC 59 26655178 26669026 TCTTCTACCTCTTCAGATTCGAG 59 NA Rattus norvegicus 81 Ovol2 ENSRNOG00000006850 ENSRNOT00000065553 1 1 1 102 3 138449224 138461604 AAATCAAGTTTACCACTGGCAC 60 138449143 138449161 TTAAGGTGACGGTTGAGCA 59 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 2 2 2 95 3 175477712 175477732 CTGGTGGTAGACTACCTACTG 59 175476319 175477655 GTAGGAGACAGCTCGAGTG 59 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408,ENSRNOT00000068594 2 2 2 80 19 42856387 42911942 TGTATAAGCACCTGCAGCA 59 42856325 42856343 TGGAGTAGTTGCACAGGAC 59 NA Rattus norvegicus 81 Plekhn1 ENSRNOG00000020295 ENSRNOT00000038556 1 1 1 80 5 173647278 173647457 GCCTGGATGAGTTCCTCTG 60 173647216 173647234 CAGACACAGAGACTGAGGG 59 NA Rattus norvegicus 81 Olr219 ENSRNOG00000047623 ENSRNOT00000045360 1 1 1 60 1 170933075 170933093 GCAGATACCTACAGCACAG 58 170933033 170933051 GTGCTAGGAGGATTACCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035074.1 ENSRNOG00000028592 ENSRNOT00000067752 3 1 1 86 12 3924153 3924173 AATCCGGATCTGGTCTCAG 59 3924085 3924105 TCTATAGACTTGTCCAGGCTC 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939,ENSRNOT00000087458 3 3 3 80 9 65715979 65716000 GAAGGAAGAACTGAGACTTCAC 59 65712979 65715939 TCCTGTAACTCGTGAAGCTC 60 NA Rattus norvegicus 81 LOC100909453 ENSRNOG00000048482 ENSRNOT00000041532 3 1 1 99 12 5115368 5116176 ACAGATATCCGCAGCTGAC 60 5116237 5116257 AGAGACATGTCCTTGTATGCT 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000673 2 1 3 80 20 31303052 31303071 AACCACTCTTCTTCACATGC 59 31303113 31303510 GTCAGTTCTTCTGAAGTGGG 58 NA Rattus norvegicus 81 AABR07059786.1 ENSRNOG00000008962 ENSRNOT00000011848 3 1 1 60 4 35889796 35889815 TGGACTCCATTGAGGATCTG 59 35889755 35889774 GCTTCAACAGCTTTCTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 1 2 2 80 1 188063815 188087774 CAGCTCTCAGAATGAAGTGGA 60 188063755 188063773 TCCACATTCAGTCTGCCAG 60 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000034180 ENSRNOT00000046519 2 1 1 60 10 64336374 64336393 TAAGAGGCGAAACACTACCG 60 64336413 64336434 TCTTCGGTAGACGATCTTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tipinl1 ENSRNOG00000037221 ENSRNOT00000056239 1 1 1 60 5 174399 174419 AAACTAACAGCCTTGATGCAG 59 174359 174380 TCAGATGAACTTGTCACAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syngr2 ENSRNOG00000050547 ENSRNOT00000074225 1 1 1 90 10 106815618 106815999 CCTGCTCTTCTCAGCTCTC 60 106816053 106816071 CACGTCATCAGGTTTGGTG 59 NA Rattus norvegicus 81 Tmem55b ENSRNOG00000009948 ENSRNOT00000013225 2 1 1 80 15 27854434 27854452 CCTCTGAGTCCAGAACCAC 59 27854212 27854392 GAATTCTGTCCACAGAAACGT 59 NA Rattus norvegicus 81 Caskin2 ENSRNOG00000004310 ENSRNOT00000005942 2 1 1 81 10 104349217 104349236 CGAGCGCTTAAGGATTTCTG 60 104348616 104349173 GTTCAAGCACCGTGATGAC 60 NA Rattus norvegicus 81 Cks1l ENSRNOG00000032516 ENSRNOT00000052379 2 1 1 60 5 110832034 110832054 CTGAATGGAGAAATCTCGGTG 59 110831994 110832015 TCATGGATCATATAGTGAACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905,ENSRNOT00000080600 2 2 2 80 2 251007993 251008012 GCCTACAGCTCCAAATTCAG 59 251008052 251011218 CTATTTGGGTTTCCAAGCTCTG 60 NA Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 1 2 2 80 1 101217211 101218539 AGCTGAAGGACCAAGTCTC 59 101218583 101218601 AAGGTGCAGAGATGAGCTG 60 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 3 1 1 66 15 27965964 27968277 GACATCCCACTTCTGTGAG 58 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000067781 1 1 2 114 15 2741196 2741970 AACCACAAGGGATGGACTC 59 2742048 2742066 AGCAATCGCTGTAGTGAGG 60 NA InUTR Rattus norvegicus 81 Smim24 ENSRNOG00000048878 ENSRNOT00000075038 1 1 1 80 7 11185348 11185367 TGGGCTTCCTGTTCATAGTC 60 11184981 11185306 CCTCTTCATCCTCTGCTCTG 60 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 3 2 2 80 2 102707721 102707742 GAGACTTTGTAGCTGTCTTTCC 59 102703168 102707685 GATCAAACCTAAAGTCCTTTGGAG 60 NA Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 3 2 2 81 1 205623462 205629967 GACGGAAGATGGTTCACTC 58 205623399 205623417 AGTGGATTTCCTTCAGGGA 58 NA Rattus norvegicus 81 Mettl17 ENSRNOG00000025512 ENSRNOT00000064907 1 1 1 80 15 28293493 28293512 GCATTGTCACCTCTGTTGTC 60 28293554 28293653 CGATATAAATCCCTGCCGTG 59 NA Rattus norvegicus 81 Armc6 ENSRNOG00000020280 ENSRNOT00000027550 2 1 1 80 16 20945055 20945075 ACATTGTGAAGACAGTACCGA 60 20945115 20948879 GATCATTGAGAGCCTGTAGGA 59 NA Rattus norvegicus 81 Olr557 ENSRNOG00000031264 ENSRNOT00000050634 2 1 1 60 3 75354534 75354553 GCTACTATCCCAAGAATGCT 57 75354576 75354594 CCAGCACAGAAATGTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0736.1 ENSRNOG00000003027 ENSRNOT00000004045 2 1 1 60 X 72677132 72677152 TTGCATCACCTATGAGAAGGA 59 72677172 72677192 TTTGTGATCATCTAGGAGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd79a ENSRNOG00000020125 ENSRNOT00000027254 3 1 1 128 1 81765960 81765978 ATCTTGCTGTTCTGTGCAG 59 81767490 81767641 AAGATTCAGGCCCTCATAGAG 59 NA Rattus norvegicus 81 Rn60_13_0844.1 ENSRNOG00000051105 ENSRNOT00000076665 1 1 1 60 13 79493501 79493521 TGCTCCAATATGACTCTACCC 59 79493540 79493561 TTCCTATTCTCATCCTTGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd8a ENSRNOG00000007178 ENSRNOT00000009515 2 1 1 97 4 99239161 99239269 TACTGCTGGATGTTATCACTAGG 60 99239326 99239344 TGTTAGCTTCACCTCCTGG 59 NA Rattus norvegicus 81 Grin2a ENSRNOG00000033942 ENSRNOT00000044626 1 1 1 80 10 6082916 6111290 GTTGGTGATGGTGAGATGG 58 6111332 6111352 ACTCATCACCTCATTCTTCTC 57 NA Rattus norvegicus 81 LOC100909796 ENSRNOG00000009770 ENSRNOT00000012938 2 1 1 60 3 74737955 74737975 TCTACGGTGTGATCATGTCTC 59 74737915 74737934 TAGAGGTATGGAATGCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 1 2 2 80 2 236420650 236420668 GGAGGTACAGCGGTTATCC 60 236418905 236420606 CTGTACCCTTGGAGGACTG 59 NA Rattus norvegicus 81 Hpx ENSRNOG00000018257 ENSRNOT00000024710 3 1 1 80 1 170430678 170430779 GATGTAATCGAACACTGCTCAG 60 170430619 170430639 TTTAAAGAACAGCATGGTCCC 59 NA Rattus norvegicus 81 Lgals8 ENSRNOG00000018046 ENSRNOT00000044662 3 1 1 82 17 66502062 66502082 TGGAAACATCTACTCTGGGAC 59 66495405 66500709 AAATGGCAGGCTCAAATGG 59 NA Rattus norvegicus 81 Athl1 ENSRNOG00000014783 ENSRNOT00000020004 2 1 1 80 1 213741940 213741961 GGTGCAGTGAACTTCTTAACAG 60 213742002 213742085 CGCAGTGATCCTGAATCCT 60 NA Rattus norvegicus 81 AC107446.1 ENSRNOG00000023090 ENSRNOT00000030413 3 1 1 88 3 57743105 57743123 CTTAACTCTGCGTCTGCAG 59 57743035 57743053 CAGCTAAATGGAGGCAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909940 ENSRNOG00000061224 ENSRNOT00000080494 1 1 1 60 3 74781631 74781651 TCTTCATGTACCTACAACCAC 58 74781591 74781609 ACAGAGGCCATCTTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fabp1 ENSRNOG00000006675 ENSRNOT00000008840 2 1 1 80 4 99064845 99064864 TGATCCACAATGAGTTCACC 58 99064907 99066149 TCTTAACCACTGCCTTGAC 57 NA Rattus norvegicus 81 Tlr11 ENSRNOG00000032368 ENSRNOT00000039925 1 1 1 81 15 27178023 27179263 TGCTCAAAGAATCAATGCCA 59 27179303 27179325 CTCACCAAAGTCAGTAGTATCAG 59 NA Rattus norvegicus 81 Atad5 ENSRNOG00000021903 ENSRNOT00000035642 1 1 1 80 10 67450849 67450867 GTACCAGCCTCAGAATTCG 58 67450909 67452230 TTCCAATCCTTCAACCAACTG 59 NA Rattus norvegicus 81 Zfand1 ENSRNOG00000010342 ENSRNOT00000013905 2 1 1 82 2 93659498 93659518 GTATGTGATGGTTGTTCAGGA 58 93660259 93661423 TTGATCACATTCGCCTCAG 58 NA Rattus norvegicus 81 LOC100912373 ENSRNOG00000047537 ENSRNOT00000075067 1 1 1 80 5 28486016 28488033 TCTCTTCTCCTCCAGGACC 60 28488075 28488095 CTCCACTTTGTAAGCACTGAG 59 NA Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 3 2 2 80 2 154526561 154526580 CTCCTCATCAGCAAGTACAC 58 154526104 154526519 TCCAAGCAACAATCTGTAGG 58 NA Rattus norvegicus 81 LOC100360997 ENSRNOG00000033801 ENSRNOT00000047082 2 1 1 92 15 29341811 29341829 TGTTTCACTGGTGGTCCTG 60 29341189 29341207 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07014573.1 ENSRNOG00000023418 ENSRNOT00000038393 1 1 1 60 14 21770613 21770632 CATAACTACCACACCTCCCA 59 21770572 21770591 TTTGTCTCCAGTAAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr636 ENSRNOG00000051516 ENSRNOT00000085537 3 1 1 60 3 76842968 76842987 TTTGCTTCCTGTTCTTCTCC 58 76843008 76843028 AGGATCATCAGATTCCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 1 2 2 80 1 78077486 78078071 AGTCTAATCGTACAGGGCAG 59 78078113 78078132 CATGTGGTTGAGTCTCTGTG 59 NA Rattus norvegicus 81 AABR07017693.1 ENSRNOG00000052828 ENSRNOT00000060399 1 1 1 80 15 30147485 30147759 GGATCCAATTAAACTGGGTGAG 59 30147426 30147444 CTATGGATCCCTCTGGGAC 58 NA Rattus norvegicus 81 Gnat1 ENSRNOG00000017589 ENSRNOT00000023791 3 1 1 80 8 116436376 116436509 AGCAGATGAAGATTATCCACCA 59 116436317 116436337 GAGTGTTGCCATAGATGATGG 59 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 2 2 2 82 14 21490739 21552671 TATAGCATGCTTCCAGTCAG 57 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Ptpn2 ENSRNOG00000017453 ENSRNOT00000023763 2 1 1 80 18 63432323 63432341 GTGATCCATTGCAGTGCAG 60 63427792 63432281 TCCTTTCTCCATCAGAACGAG 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000089899,ENSRNOT00000088239 2 4 7 83 9 43743204 43743224 CAAGCCATCAGATCCTATGAG 58 43749936 43751264 AGCATCCAACTTCTCTTTCTC 58 NA Rattus norvegicus 81 Sh2d1a ENSRNOG00000006263 ENSRNOT00000008444 3 1 1 83 X 128916727 128916745 GATCAAGGCATCGTAACGC 60 128916792 128917727 ATCTCTTCTCCCTGTGGGA 59 NA Rattus norvegicus 81 Vegp2 ENSRNOG00000033020 ENSRNOT00000041399 1 1 1 80 3 4220748 4221202 GAGAATCAGGATGTGTCAGG 58 4220687 4220707 AGATCCAAACTTCTTGTCAGG 58 NA Rattus norvegicus 81 Cdc123 ENSRNOG00000017770 ENSRNOT00000024016 2 1 1 80 17 76410672 76410693 GAAGAAGGAGCATGTTAGTCAC 59 76410733 76413677 AGGATGACACTCTTGATGGT 59 NA Rattus norvegicus 81 Olr1583 ENSRNOG00000045582 ENSRNOT00000044784 2 1 1 60 13 91725492 91725515 CATACTCCCATGTACTTCTTTCTG 59 91725530 91725552 TCACAGTATAGCAGGTATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrnb2 ENSRNOG00000020778 ENSRNOT00000028200 1 1 1 80 2 189093867 189094626 GTGGTTCTATACAACAATGCTG 58 189093808 189093826 GATGCTGCCATCATAGGAG 58 NA Rattus norvegicus 81 Rasd1 ENSRNOG00000003348 ENSRNOT00000004475 3 1 1 91 10 46331550 46331705 CTATCCTCACAGGAGACGT 58 46331477 46331495 TAGGATCTGCTGTTTGAGC 57 NA Rattus norvegicus 81 LOC100911492 ENSRNOG00000048322 ENSRNOT00000074488 3 1 1 82 15 25504518 25504537 GTACCCAGACATCTTCATGC 59 25502624 25504476 GATTCTTAAACCATACCTGCAC 58 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799,ENSRNOT00000003494 1 2 2 80 X 71446049 71446217 CAGCAGAAGGATGATAAGGAG 58 71446259 71446277 CAAAGATAGGCGACGAAGG 58 NA Rattus norvegicus 81 Olr418 ENSRNOG00000029787 ENSRNOT00000043676 1 1 1 60 3 20982469 20982489 CCTCTTCCTCACCATTTACCT 59 20982429 20982449 GATGACCAGAATGATGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn12 ENSRNOG00000039862 ENSRNOT00000061199 1 1 1 137 4 25686411 25686430 GGCTGTTTGGAGAAACACTG 60 25689207 25689225 GAAGAGGCCTGCTACAGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 2 2 2 84 12 8116097 8116115 GATCCAGGTACTCCAGCAG 59 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Cdh12 ENSRNOG00000026392 ENSRNOT00000034044 1 1 1 80 2 72514369 72514388 TTCCGCCAGAAATATCTGTG 58 72514428 72517023 CACCGACTATCTGAATGATCTG 59 NA Rattus norvegicus 81 LOC690288 ENSRNOG00000048741 ENSRNOT00000075792 3 1 1 80 13 100050904 100053757 CCGAATTGAGGGTCTACAC 58 100053799 100053819 GCTTCTTCTCTAGAAGGATGC 58 NA Rattus norvegicus 81 Exoc5 ENSRNOG00000013804 ENSRNOT00000067735 1 1 1 80 15 25892107 25894040 CTAATGCCACTAATAAGCTCTTCTC 60 25892051 25892074 CATCTCCATCTGCTCAATTATCTC 59 NA Rattus norvegicus 81 Kpna4 ENSRNOG00000010768 ENSRNOT00000014384 1 1 1 80 2 165702746 165702854 GACAATTCAGGAGATTCTTCCAG 59 165700375 165700394 GCCCAGACAGTATCTACCAG 59 NA Rattus norvegicus 81 Ap3m1 ENSRNOG00000011461 ENSRNOT00000016387 2 1 1 82 15 3447833 3447852 GTACACCAACAATGAAGCCT 59 3447895 3448738 CTGCAAAGACTGTAGATCCTG 59 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721,ENSRNOT00000048900 2 2 2 82 19 43173800 43174097 GAACTTCTGGATTGGGCTC 58 43174143 43174161 AACTGGTGAAGGACTTGTG 58 NA Rattus norvegicus 81 Rn60_X_0694.2 ENSRNOG00000022855 ENSRNOT00000049324 3 1 1 60 X 68476317 68476338 TAAGAAGCCTATTATTGCTGCC 59 68476356 68476377 TAATATAGATGCTCCCAGTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdap1l1 ENSRNOG00000008790 ENSRNOT00000011748 2 1 1 82 3 159838555 159838573 GACCTCATGAAACTGGACC 58 159838619 159839491 AGGATCTTGGCCATAAGCT 59 NA Rattus norvegicus 81 Rn60_12_0368.1 ENSRNOG00000046100 ENSRNOT00000074696 2 1 1 60 12 34868465 34868484 ACTCCCTTTCAAACATGGTC 58 34868424 34868443 ATTGGTGTTGTTAGTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000077334 2 1 4 80 2 149476043 149476063 CAACCCAAACACTATTGGGAG 59 149476100 149476847 CGTTCAGAGGAACTTAAGAATGTC 60 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 2 3 3 86 9 12476113 12476132 AAGTGTCAATTCGAGAGGGA 59 12476181 12477188 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 AABR07017707.1 ENSRNOG00000047808 ENSRNOT00000070991 2 1 1 96 15 30270772 30270908 GCTCCTCATCCTCACAAGG 60 30270962 30270986 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Pfkp ENSRNOG00000017163 ENSRNOT00000023252 3 1 1 80 17 68517638 68527030 GAACACTATCACAGACACGT 58 68517577 68517597 ATGGTCTCAATGATGAACACC 58 NA Rattus norvegicus 81 Orai3 ENSRNOG00000039730 ENSRNOT00000025732 1 1 1 92 1 199217832 199217850 CTAAGCTCAAAGCCTCCAG 58 199220942 199220960 ATTCATGATCGCTCTCCAG 57 NA DesignNoJunction Rattus norvegicus 81 Basp1 ENSRNOG00000046313 ENSRNOT00000073915 2 1 1 60 2 77587228 77632425 CCGAACTCCAAGATGGGAG 60 77587186 77587204 CGTCGTTCACATTGTAGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr649 ENSRNOG00000054715 ENSRNOT00000078540 1 1 1 60 3 77073124 77073144 GGATCTCACATTGCTGTTGTC 60 77073161 77073184 GTCGCATATACATGAAAGTACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr428 ENSRNOG00000030460 ENSRNOT00000041835 1 1 1 60 3 21276917 21276936 GTGGAAAGCCTTCTCTACCT 59 21276959 21276977 ACTCCCATAGAACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grik4 ENSRNOG00000030910 ENSRNOT00000048347 1 1 1 80 8 46836124 46851706 GAGTTCATATGGGACGCAG 58 46836062 46836081 CTAGAAGCATGAAGAGCCAG 58 NA Rattus norvegicus 81 Olr657 ENSRNOG00000045624 ENSRNOT00000043928 3 1 1 60 3 77389292 77389312 TTTCTCAACAACTGTAGCTCC 58 77389252 77389271 GATAGAAGCCTCCTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529,ENSRNOT00000078477 2 2 2 80 1 104917276 104918171 GAGTCTAGACATGTTGCTGG 58 104918211 104918232 CTGACAACTATCTTAACATGCC 57 NA Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000084270 3 1 2 98 1 226742944 226760205 CAGGGTAGCAATAGTTAAACTGAG 59 226760262 226760280 TTCTGCATTTCCTCCAGCT 59 NA InUTR Rattus norvegicus 81 AC118833.1 ENSRNOG00000038412 ENSRNOT00000058502 3 1 1 63 19 54174198 54174216 CAGACACGTGTCAATGCTG 60 54174105 54174123 GCACACCTTCAATGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC688906 ENSRNOG00000005263 ENSRNOT00000007003 1 1 1 80 7 137815762 137815782 GCATTGATTAGGCAGAAACGA 59 137814211 137815721 AGAGCCAACTCTTCCATTCC 60 NA Rattus norvegicus 81 Zmpste24 ENSRNOG00000012054 ENSRNOT00000016410 1 1 1 80 5 140006369 140006388 GGAGGAATCCCTTACCTCTG 59 140001473 140006331 CTGAATGATCTCATATTCTGGTCC 59 NA Rattus norvegicus 81 LOC100360432 ENSRNOG00000032925 ENSRNOT00000052236 2 1 1 60 3 151691689 151691709 CACATTTCCTATCTCTTGCCC 59 151691728 151691749 CTCAAGGTGGTTGATGTAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddias ENSRNOG00000022521 ENSRNOT00000031974 3 1 1 80 1 157680704 157680723 CATTACTGTGTTTGGGAGCT 58 157679783 157680665 CTAGAATCCTTAAGGTACCTGTG 58 NA Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 1 1 1 85 1 221596602 221596770 CCCTTTAACGTGACAGTGC 59 221596819 221596837 GACTCACAGTGTCCTACAC 57 NA DesignNoJunction Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 3 2 2 81 4 99410038 99413192 CAGTGATCCCAGGTACTGC 60 99413234 99413255 TTTAGATGTGCTTGTTTGTGGG 60 NA Rattus norvegicus 81 Zfp407 ENSRNOG00000043357 ENSRNOT00000065201 1 1 1 81 18 81170191 81199046 GACTACAGGTCAAACTGTGC 59 81170129 81170148 AGTTGTACATCTTGACGCCT 60 NA Rattus norvegicus 81 Cndp2 ENSRNOG00000015591 ENSRNOT00000021400 3 1 1 80 18 81525721 81525741 ACCACATTGACTTCGATATGG 58 81524831 81525679 GGATGTCTTTCTTGCAGCT 58 NA Rattus norvegicus 81 Tmtc3 ENSRNOG00000006749 ENSRNOT00000029045 1 1 1 80 7 40207598 40208652 AACTCCTATGTCTGAGGAGAG 58 40207538 40207558 CTGAGGAGGTAATTTAAGCGA 58 NA Rattus norvegicus 81 Olr555 ENSRNOG00000010052 ENSRNOT00000013328 3 1 1 60 3 75300041 75300060 TTCTACCTGTTCTTCCCACC 59 75300083 75300101 GGTGACACTAGCTGATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c22 ENSRNOG00000021924 ENSRNOT00000054724 2 1 1 81 1 259282793 259284741 CCAAGGGTTAGGCATTGTC 59 259282730 259282751 CATAGACCTTAAGACCATGAGG 58 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 5 6 80 20 3571973 3571991 GAGTGGATTTCCCTCGGTC 60 3572033 3572211 CTTCACAGAGATGTACCTCCC 60 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535,ENSRNOT00000050764 3 2 2 84 2 127723011 127723029 ATATGTCCATGTGCCAGCT 59 127721795 127722963 AGCTACATTTCCTGCTCCG 60 NA Rattus norvegicus 81 Kctd3 ENSRNOG00000002627 ENSRNOT00000003556 2 1 1 80 13 107460636 107461241 TATTAGGCTGGGAGTCCCA 59 107460574 107460592 GCATAGGCAGCTACAATCC 59 NA Rattus norvegicus 81 E2f8 ENSRNOG00000022537 ENSRNOT00000035512 2 1 1 80 1 104200413 104200431 CGAGGTACCCTAAGTACCC 58 104197042 104200369 GTTCGACATTGAGCTCCTC 58 NA Rattus norvegicus 81 Tkt ENSRNOG00000016064 ENSRNOT00000021862 3 1 1 82 16 6632051 6632923 GAAGAAAGAGAAGATCGGCG 59 6632968 6632986 TGGCACAGTCGAGAATGAG 60 NA Rattus norvegicus 81 Exo5 ENSRNOG00000037432 ENSRNOT00000056644 2 1 1 99 5 139852794 139852812 AAGTACCTACGCATCTCCC 59 139851411 139852731 TGAACAAGTAGGGACCTGG 59 NA InUTR Rattus norvegicus 81 Wipf2 ENSRNOG00000027849 ENSRNOT00000029021 2 1 1 80 10 86795841 86801713 TTCAGTCAGGCAAACACAG 58 86801756 86801775 GCAGATGTCTTGTAAGAGGG 58 NA Rattus norvegicus 81 LOC100362391 ENSRNOG00000048888 ENSRNOT00000073768 1 1 1 60 4 102426446 102426466 GTGTTTGTGGTAGCTTTAGGG 59 102426486 102426506 GCTTCTTACACTCATTCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph10b ENSRNOG00000001036 ENSRNOT00000034483 3 1 1 80 12 12692202 12692223 GAGATTTCTGAAAGACTGCAGG 59 12688764 12692165 CCGTTATAGACACTCAATACCCT 60 NA Rattus norvegicus 81 rnf141 ENSRNOG00000017900 ENSRNOT00000024561 3 1 1 86 1 175647003 175650545 CTGAACTCAATGATGTAACTGC 58 175646938 175646956 CAGAAGAATCAGACCCAGG 57 NA Rattus norvegicus 81 Cpne1 ENSRNOG00000050864 ENSRNOT00000026657 3 1 1 80 3 151617867 151618039 ACGATTTCAGAATGCTCCAC 59 151617806 151617827 TTGAAGTAGGAAACCATCTGAG 58 NA Rattus norvegicus 81 Rn60_18_0532.1 ENSRNOG00000043100 ENSRNOT00000055675 1 1 1 60 18 53905409 53905427 CCAGGTCATCTTTCCAGTC 58 53905450 53905469 ACCAACCTCTAGTACATCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem40 ENSRNOG00000010430 ENSRNOT00000013889 1 1 1 80 4 147646785 147646903 ACCACTACTATTCAGACTGGT 58 147646725 147646743 AGTAGATGCCGATGGTCTC 59 NA Rattus norvegicus 81 Olr363 ENSRNOG00000053382 ENSRNOT00000083727 3 1 1 60 1 230269832 230269852 TGATCATTCCTATGCTGAACC 58 230269871 230269892 GCATTCTTGACTTCTTTGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr619 ENSRNOG00000021473 ENSRNOT00000037779 2 1 1 60 3 76469165 76469186 AGATGAAGAATGCCATCAAGAG 59 76469206 76469225 ATCCTGCTTCCTTCACTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr619 ENSRNOG00000021473 ENSRNOT00000037779 3 1 1 60 3 76468830 76468848 GTACCCTCTGCTCAAACTG 58 76468872 76468890 AGCAATGACCAAGAAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtm1 ENSRNOG00000057711 ENSRNOT00000080433 3 1 1 80 19 864821 868659 TGAGGATGTGCATTACTGC 58 864759 864780 GAATCATGATGGCTACAAACAG 58 NA Rattus norvegicus 81 AABR07017635.1 ENSRNOG00000046292 ENSRNOT00000075046 3 1 1 63 15 29465761 29465779 CTTTCAGCTCCATTTGCCT 58 29465533 29465551 ATTGAAGCCTGAGTTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 3 2 2 101 5 58394293 58396482 AAGTTTCGAAACAAGGAGCC 59 58396546 58396564 GATCTCATCTTCGTTGGCC 58 NA Rattus norvegicus 81 AABR07017768.1 ENSRNOG00000046840 ENSRNOT00000060420 1 1 1 80 15 30812620 30812815 GATTTGCTGGGTGAGAGGA 59 30812857 30812877 CTCAGAGAAGAATTGGTTCCC 58 NA Rattus norvegicus 81 Cep57l1 ENSRNOG00000000303 ENSRNOT00000000331 3 1 1 80 20 46620296 46620314 GCTAAACTGGAGAAGCTGG 58 46619089 46620252 AATCTTCTCCTCCGCAGTC 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000034083 1 1 3 80 X 123891200 123892552 CCTATAATGCTCCATCGTCC 58 123891139 123891160 GGTCTGTAAATCTGTCATGGAG 59 NA Rattus norvegicus 81 Tmem43 ENSRNOG00000007519 ENSRNOT00000010895 3 1 1 80 4 123126726 123126744 CCCATGTGGACATCATTCG 59 123126788 123127013 CTCGAACATCACCAACCTC 58 NA Rattus norvegicus 81 RGD1561143 ENSRNOG00000046184 ENSRNOT00000075641 2 1 1 109 12 21868952 21922395 CAAACTCATCATTCATGCTCTC 58 21868864 21868882 GTGAAGGATTCCTCTGGTC 57 NA Rattus norvegicus 81 Lta4h ENSRNOG00000004494 ENSRNOT00000005930 2 1 1 80 7 34318377 34320031 ACACGACCTCTATTCAAGGAC 60 34320071 34320091 GGCTTTATGTTCCTGGTAGGT 60 NA Rattus norvegicus 81 Stkld1 ENSRNOG00000027911 ENSRNOT00000031316 2 1 1 80 3 5498561 5499524 CAAAGGTGTCTGAACTGGTG 59 5499567 5499585 AGATGTCTTGGACGAGGTG 59 NA Rattus norvegicus 81 LOC680910 ENSRNOG00000048881 ENSRNOT00000074057 3 1 1 103 12 20483173 20485361 CATCATTCATGCTCTCAATACTACC 60 20483094 20483113 GTGAAGGATTCCTCTGGTCC 60 NA Rattus norvegicus 81 Morn1 ENSRNOG00000014642 ENSRNOT00000019930 2 1 1 81 5 172495585 172503664 CTCCACATACAAGGGACAG 57 172503709 172503727 ACAGTAGGTGACTCCTGAG 58 NA Rattus norvegicus 81 Morn1 ENSRNOG00000014642 ENSRNOT00000019930 3 1 1 81 5 172495586 172503666 TCCACATACAAGGGACAGTG 60 172503709 172503728 CACAGTAGGTGACTCCTGAG 59 NA Rattus norvegicus 81 Upf2 ENSRNOG00000023593 ENSRNOT00000058070 3 1 1 80 17 76199342 76199366 GAAGAGAATACAGATTACCTCACAG 59 76199040 76199306 TCCCTTAATCATCACCTCAGC 60 NA Rattus norvegicus 81 Terc ENSRNOG00000051777 ENSRNOT00000084300 1 1 1 60 2 116432692 116432710 TATTTAGGGACAAGGGCCG 59 116432730 116432752 GAACCCACAGCTATAACAATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gars ENSRNOG00000011052 ENSRNOT00000014780 1 1 1 80 4 85273686 85273706 CTCCATTCAAATGTTCTGTCC 57 85273747 85274348 TCAGAGCTTCCGATAATTCC 57 NA Rattus norvegicus 81 Slc36a4 ENSRNOG00000011455 ENSRNOT00000015383 2 1 1 80 8 14262994 14263015 CTACATGTGTTTCCGAGATGAG 59 14263054 14266835 TTCACTGACTGATACAACCAC 58 NA Rattus norvegicus 81 Olr1622 ENSRNOG00000008804 ENSRNOT00000011636 2 1 1 60 15 27439489 27439510 TACATCCTTGCATCCTATATCC 57 27439531 27439549 GTCCATCTGAAGGAACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 2 1 1 79 10 109278973 109278991 GCCTGAGTAAGGACCTGTG 60 109279034 109280663 CATCATGGTCTTCTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Prol1 ENSRNOG00000023578 ENSRNOT00000032459 1 1 1 60 14 21352463 21352482 GAAACTTTCATCTTGGGCCT 59 21339461 21352440 GATGACTTTCTCCAGGCGT 60 NA DesignRelaxed Rattus norvegicus 81 Phyh ENSRNOG00000018044 ENSRNOT00000024362 3 1 1 80 17 77297010 77298770 TATTCAACGGTTTCGAGCAG 59 77296949 77296970 ACGTCTTTCATTACAGTCATCC 59 NA Rattus norvegicus 81 Zufsp ENSRNOG00000000398 ENSRNOT00000000448 3 1 1 80 20 32481184 32482854 CTCACTGAAAGTCAAGTGCC 59 32481123 32481141 CACTCGAATAAGCGAGGGT 60 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000085323 2 1 5 108 9 81674754 81674772 CAGTCCAGTACCTGCTTCC 60 81674843 81674995 TTGTTCACTGGCTTGAAGGA 60 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000081073 1 1 5 60 9 81672869 81672889 TTACTCAGATCAGCAAGGAGG 59 81672911 81674230 GACTTCTGGTCACCTTTGC 59 NA DesignRelaxed Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 1 1 1 69 4 49372164 49372182 AAAGCAAAGTCCTGCTAGC 59 49372215 49378969 ATTAACTTGGCGACAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236,ENSRNOT00000071818 3 2 2 84 7 115034622 115035328 TCGAGTGTCTGATGACACTG 60 115034557 115034575 GAGACAATGCGGATGACCT 60 NA Rattus norvegicus 81 Ovol3 ENSRNOG00000024880 ENSRNOT00000041301 3 1 1 81 1 91039961 91039981 GTGCCACTATTGTGGTAAAGG 59 91040024 91040923 GAATGGCCGTATTCCAGTG 59 NA Rattus norvegicus 81 Tas2r103 ENSRNOG00000031836 ENSRNOT00000049487 2 1 1 60 4 167180608 167180632 CTACGGCTAATGTTGATAAGTACTG 60 167180572 167180596 CATTGGCTAAGATTCCTATGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde6d ENSRNOG00000018610 ENSRNOT00000025262 1 1 1 80 9 93565424 93565443 TTCTTCAGCAGAGCAAATGG 59 93564488 93565382 AAGAACCACTCTTCTAGGCA 58 NA Rattus norvegicus 81 Tsg101 ENSRNOG00000013381 ENSRNOT00000018194 3 1 1 94 1 102957749 102957767 GATATTTGGCGAGGAGCCT 60 102954258 102957691 AGTAGGAGGTGTTTGGTGG 59 NA Rattus norvegicus 81 Pcdhga5 ENSRNOG00000027299 ENSRNOT00000027026 1 1 1 60 18 30842187 30842208 GAAAGTAGCCGACATAAATGAC 58 30842229 30842247 GGAAGTGGAATAGGAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amigo1 ENSRNOG00000045665 ENSRNOT00000074725 2 1 1 60 2 210979091 210979111 CAACACAGCCTATACTACCCT 59 210979131 210979151 GTATATGAGGACCAGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622,ENSRNOT00000057266 3 2 2 80 12 41281757 41282669 TAGGATTGTGAAGGGTGGC 59 41282713 41282731 TTAAGGAACACCACCAGGG 59 NA Rattus norvegicus 81 AABR07017768.7 ENSRNOG00000060582 ENSRNOT00000090761 2 1 1 60 15 30821097 30821115 TCACTCTCACAGAGCAGTC 59 30821134 30821157 GTTGAGTAAGTAGTCTGATAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 3 2 2 80 15 28631212 28631231 CTGATCTTCTCCCAGATGGT 59 28630998 28631172 AATGCGTTCGTATAAGTACCTC 59 NA Rattus norvegicus 81 Oc90 ENSRNOG00000050531 ENSRNOT00000044610 3 1 1 80 7 106442413 106443605 ACATCAAGTCCCGGATCTG 59 106442351 106442370 CCTCACTGACTTAATGCCAG 58 NA Rattus norvegicus 81 Gba ENSRNOG00000049281 ENSRNOT00000074727 3 1 1 80 2 188521453 188521471 CCATCATTGTCGACATCCC 58 188521514 188521849 GGATGAACTTGCTGAAGTGG 59 NA Rattus norvegicus 81 Cyp26a1 ENSRNOG00000016750 ENSRNOT00000022549 2 1 1 80 1 256385877 256385896 GAGACCCTTCGATTGAATCC 58 256385939 256386209 AATCTGGTAACCGTTCAGC 58 NA Rattus norvegicus 81 Rnf148 ENSRNOG00000042462 ENSRNOT00000064228 2 1 1 63 4 50688225 50693854 TCAGATGTCACAGTTAATGGAG 58 50688183 50688201 CAGACCTATGAGCTGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Atoh8 ENSRNOG00000010716 ENSRNOT00000014277 3 1 1 146 4 100087870 100087890 GTAACTACATCCTGTCCCTGG 60 100068322 100087762 TGACAGGTCACTCCTTACG 59 NA InUTR Rattus norvegicus 81 Setd5 ENSRNOG00000007472 ENSRNOT00000066723 3 1 1 80 4 145061741 145061760 GAGAATCATGACCCACAACC 59 145061801 145062434 TTCTGGATTGTCAACTTCCTC 58 NA Rattus norvegicus 81 Rn60_X_0706.1 ENSRNOG00000003035 ENSRNOT00000004052 1 1 1 60 X 69717857 69717875 CCAAGTCCAAGAACCACAC 59 69717815 69717834 TTGATGCCATTTCTATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankh ENSRNOG00000010960 ENSRNOT00000068484 1 1 1 86 2 80219266 80226177 TAGCTCAGGTTGTGTTCGT 59 80226227 80226245 TGTACAGAGACAGGATGGG 58 NA Rattus norvegicus 81 Lbhd1 ENSRNOG00000019701 ENSRNOT00000039991 1 1 1 93 1 225085673 225086655 AAGAAACGTGCATCCAGTG 59 225086712 225086730 TTTCTTTCTGGGCAAGTCG 58 NA Rattus norvegicus 81 Pld6 ENSRNOG00000021657 ENSRNOT00000033483 2 1 1 82 10 46143236 46145127 GCAAGGCAGGTATACAGGT 60 46143172 46143190 GAGCACCTTCTTGTCAACG 59 NA Rattus norvegicus 81 Snx4 ENSRNOG00000001786 ENSRNOT00000002432 1 1 1 80 11 70699145 70699164 CGGATAAAGGTGCTAGAGGA 59 70697216 70699103 CACAAATTCTCTGCCTTCCA 59 NA Rattus norvegicus 81 Snrnp25 ENSRNOG00000020626 ENSRNOT00000027989 2 1 1 80 10 15687478 15687496 CCTGAAGAAGGCTATCCAG 57 15686612 15687435 ACATAGGACCAGCTTATGTG 57 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 2 2 2 80 17 87932501 87932519 ACATGGTGAAGGTAGCCAG 59 87929052 87931277 TCTCGAATCCAGCATAGTCAG 60 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 3 2 4 70 13 80439269 80440888 AAAGGTGCTTGTGATCGGA 60 80439217 80439235 TATCCTGATAGCCCACGTC 58 NA DesignNoJunction Rattus norvegicus 81 Mir291a ENSRNOG00000051974 ENSRNOT00000083441 2 1 1 60 1 64538464 64538484 TGTAGTAGCCATCAAAGTGGA 59 64538424 64538444 AAAGTGGAAGCACTTTCTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr560 ENSRNOG00000037837 ENSRNOT00000057483 3 1 1 60 3 75412808 75412829 TGGTCATGAACAATAAGGTCTG 59 75412849 75412868 GGAATAATACAGACCCAGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neto1 ENSRNOG00000014006 ENSRNOT00000019384 1 1 1 80 18 83480751 83542810 CGATATAATTTCACACCTGATCCC 60 83542968 83542986 GCCCATCTCAAACTCACAC 59 NA Rattus norvegicus 81 Rep15 ENSRNOG00000001840 ENSRNOT00000002518 3 1 1 60 4 181429214 181429234 AGATTCGATAAGCTGGAAGAG 57 181429254 181429274 TAAACAGACCTAGACAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp449 ENSRNOG00000050562 ENSRNOT00000073827 2 1 1 80 X 73393013 73393033 AGAGAAAGAGTTGTGTCACTC 58 73393073 73397460 CATGTCATCCATGTCAATCTG 57 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298,ENSRNOT00000077347 2 2 2 80 10 10828172 10828190 GTCAGCTCGATTGAAGCAG 59 10828234 10828639 CAGCCTTTGGAATCTGCTG 59 NA Rattus norvegicus 81 Dclre1c ENSRNOG00000015980 ENSRNOT00000021506 3 1 1 80 17 78807484 78810799 CTGGAATGCAGTTTGAAGGTC 60 78807424 78807443 GAACTTGTACTTTGGGCTGG 59 NA Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 2 1 1 75 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162419564 162423254 TACATTCAGCTCCACAACGA 60 NA DesignNoJunction Rattus norvegicus 81 LOC100361103 ENSRNOG00000033855 ENSRNOT00000042619 3 1 1 60 4 178617429 178617452 GTACTCGGTATATGTTCTCTAGAC 58 178617471 178617489 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060254 3 1 10 80 15 32425489 32614120 AGACTCAGCCATCTACTTCTG 59 32806058 32806078 TTGACTGTTAGTCTGGTTCCT 59 NA Rattus norvegicus 81 Zbtb16 ENSRNOG00000029980 ENSRNOT00000045356 2 1 1 82 8 52988476 52993734 GCTCACATACAGGTGACCA 59 52988412 52988430 CTTGTGGCTCTTGAGTGTG 59 NA Rattus norvegicus 81 Csgalnact2 ENSRNOG00000014713 ENSRNOT00000019778 3 1 1 80 4 150167231 150167252 GTGTTCAGTCTTTACAACCCTG 60 150162117 150167190 TTTATGAACCAGCTGCTGC 59 NA Rattus norvegicus 81 RGD1563124 ENSRNOG00000031205 ENSRNOT00000047587 2 1 1 60 7 23952848 23952871 GGAGAAGAATCTGAAAGAGAAAGG 59 23952811 23952831 AGTGATTCTCAGTGTCTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ice2 ENSRNOG00000010160 ENSRNOT00000013742 2 1 1 80 8 75660347 75661839 AATTATGTAGCTTGCAGGAAGG 59 75661877 75661898 CTGAGGTCTTGTAGATCAGGAG 60 NA Rattus norvegicus 81 Gpx2 ENSRNOG00000055672 ENSRNOT00000080270 1 1 1 83 6 99842959 99842977 CTCAATGAGTTGCAGTGCC 60 99840618 99842912 ACAGTTCTCCTGATGTCCG 59 NA Rattus norvegicus 81 LOC100912257 ENSRNOG00000049493 ENSRNOT00000071378 1 1 1 60 4 1698073 1698091 AACTTGGCCTTTGTAGACC 58 1698031 1698051 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab25 ENSRNOG00000023640 ENSRNOT00000032355 2 1 1 80 2 187904016 187904034 CTGCTATTCCTGGAGACCT 58 187903631 187903974 TGCAAAGATCTCTTTGAGGAC 58 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 1 2 2 80 13 82355956 82356453 TGCTCTCACCTTTGTTCTC 57 82356494 82356515 TCATCATATGTCATGAGCTCAC 58 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 1 2 2 80 19 38227821 38227839 GGTAGCATCTGCCTTTGTG 59 38227883 38228315 TGTAAACACCTGCTCTGCT 59 NA Rattus norvegicus 81 Nova2 ENSRNOG00000013847 ENSRNOT00000057965 2 1 1 86 1 79848610 79855870 ACTTCTACCCAGGAACTACAG 59 79855917 79855936 TTTCTGCGATAAAGCTGTGG 59 NA Rattus norvegicus 81 Snapc2 ENSRNOG00000001056 ENSRNOT00000001398 3 1 1 84 12 2539036 2539056 GTATGGATGGATCTTGCTGAG 58 2538529 2538990 CAGCAATGGTGAGTACCTG 58 NA Rattus norvegicus 81 Serhl2 ENSRNOG00000022932 ENSRNOT00000036586 3 1 1 80 7 123967796 123967815 AGACACTGAAGGTGGAAGAC 59 123967857 123969231 TCTTAGTCAGGAGCTCATGC 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715,ENSRNOT00000021976 3 2 2 80 1 78750082 78751962 GGAACAGATCAAGAGGAACG 58 78752005 78752023 AAGAAGGGTATCTGCTCCA 58 NA Rattus norvegicus 81 Snca ENSRNOG00000008656 ENSRNOT00000039247 3 1 1 80 4 90783993 90784012 AAGAGGGAATCCTGGAAGAC 59 90782992 90783950 AGTCTTGGTAGCCTTCCTC 58 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934 3 1 2 84 18 55897696 55916080 GAGTCCAGCTCCAGATAGC 59 55897630 55897649 TTCTGAGCTGGGTAATGACG 60 NA InUTR Rattus norvegicus 81 RGD1564306 ENSRNOG00000029793 ENSRNOT00000049144 3 1 1 60 3 38367748 38367771 CTTACGGAGGTCTTAATTTATGGC 60 38367790 38367808 GAAGCATCCATTTAGCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932,ENSRNOT00000076578 1 2 2 80 13 82739431 82742020 TTCAAACCTAAGCCTCCCA 59 82739369 82739387 GACAGGTAGGACGTTTGGA 59 NA Rattus norvegicus 81 AABR07000658.1 ENSRNOG00000055111 ENSRNOT00000086275 2 1 1 80 1 21145672 21145693 CGCTGTCAAGAACTATGCC 59 21145610 21145629 AGGTCTTTGATGGTTCTGGA 59 NA Rattus norvegicus 81 Slc39a3 ENSRNOG00000045524 ENSRNOT00000073221 3 1 1 74 7 11548372 11548390 CTTTAATGCACTGCTGCCT 59 11550197 11550215 TAGTCAGTGCTGATGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Hs3st3b1 ENSRNOG00000003384 ENSRNOT00000004546 3 1 1 62 10 50401695 50401713 CTACCACAAAGGTCTTGCC 59 50369775 50369793 GTGATCTGTCCCTCAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Eif3f ENSRNOG00000015221 ENSRNOT00000021017 1 1 1 80 1 173538970 173540301 CCTATGTCAGCACTTTAATGGG 59 173540339 173540360 AATACGCATACTTCACTGTGAG 59 NA Rattus norvegicus 81 Ttll12 ENSRNOG00000022623 ENSRNOT00000037710 2 1 1 80 7 124475118 124475139 TGCACTATAATGAGTTCATCCC 58 124474205 124475077 TGAAGATCTCAGCCTGGAC 59 NA Rattus norvegicus 81 Alg9 ENSRNOG00000010877 ENSRNOT00000029166 2 1 1 80 8 55216066 55216084 CAAGACACCCATTGCTGTG 60 55216128 55218254 ATGGGTAAACCGAGAGCTG 60 NA Rattus norvegicus 81 Gpr157 ENSRNOG00000017528 ENSRNOT00000055536 1 1 1 85 5 167110297 167120933 TTTCACCTCATCAGCTGGG 60 167120982 167121000 ACATCAGAGGCATCGTAGC 60 NA Rattus norvegicus 81 Sdhaf2 ENSRNOG00000020646 ENSRNOT00000028028 2 1 1 84 1 226566439 226566536 TTCTCCTGAGCCTCTTTGC 60 226566373 226566393 GGCTCATTAATCAGACGATCG 59 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495,ENSRNOT00000032112 2 3 3 80 4 158420162 158420181 AAACTGCTAAAGGAGAGTGG 58 158420222 158497419 ATCTTCATCATCCTCATCGTC 58 NA Rattus norvegicus 81 Lyplal1 ENSRNOG00000023130 ENSRNOT00000032865 1 1 1 80 13 104077318 104077338 GATCAAGCAGGTACTAAACCA 58 104063263 104077276 GTATATGGCCTGGAGGGAG 59 NA Rattus norvegicus 81 Lyplal1 ENSRNOG00000023130 ENSRNOT00000032865 3 1 1 80 13 104077314 104077333 AGCAGGTACTAAACCAAGAC 57 104063258 104077271 GAGGAGTATATGGCCTGGA 58 NA Rattus norvegicus 81 Znhit2 ENSRNOG00000021794 ENSRNOT00000028482 3 1 1 60 1 221425130 221425148 ACTCTGCTCGATGTTTCTG 58 221425169 221425190 CTTCCTCTGTAGAGTGAAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam58b ENSRNOG00000022582 ENSRNOT00000011019 2 1 1 60 10 66020192 66020210 CAAGAACTGGCTGAATCGT 58 66020150 66020168 AGCCCAAGCTGTAACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasip1 ENSRNOG00000021004 ENSRNOT00000032535 3 1 1 86 1 101612006 101612024 ACTCAGTGCCTCATTCAGG 59 101612073 101614521 ATACACCACGAAGTCCTGAG 59 NA Rattus norvegicus 81 AABR07053580.1 ENSRNOG00000051627 ENSRNOT00000080247 3 1 1 80 3 114688364 114688383 TCCAGATCTGAATCTAGGGC 58 114688300 114688325 TCTATGAGAGTGAGATGATCGTG 59 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534,ENSRNOT00000072803 1 2 2 80 17 90205072 90205091 GTACCAGCAGAAAGTGTGAC 59 90203902 90205033 GACATACTTTCGAAGATCCTCTG 59 NA Rattus norvegicus 81 Tnfsf4 ENSRNOG00000002968 ENSRNOT00000003969 3 1 1 83 13 79270255 79270275 CTATGTCTGCCTGCAATTCTC 59 79290222 79292358 CCCTCACATCCGGTAACTG 60 NA Rattus norvegicus 81 Cyp2ab1 ENSRNOG00000042367 ENSRNOT00000066953 2 1 1 81 11 84509152 84509505 TCACAAATCACCAAGGCCA 60 84509546 84509568 GAAATAGGTCAATCACCACTTGG 60 NA Rattus norvegicus 81 Clk1 ENSRNOG00000025768 ENSRNOT00000030934 3 1 1 80 9 65302108 65303850 ATCGATCATAAAGTGGGAGGT 59 65302048 65302066 CGATTGAGCAGCTTCACAG 59 NA Rattus norvegicus 81 AABR07032457.1 ENSRNOG00000015806 ENSRNOT00000021161 2 1 1 81 18 66741266 66741285 CATCAAGGGAATGGGTACTG 58 66741325 66741840 GACATTGTATGTAGACTCTTCGG 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 3 2 2 99 2 189893199 189896029 CTTAAGCAGAGCTTAAAGCAG 57 189893120 189893138 TTCTTCCTCCAATTGCTCC 57 NA Rattus norvegicus 81 Pnp ENSRNOG00000009982 ENSRNOT00000013582 1 1 1 80 15 27882241 27882369 CCAACGATGAAAGGTTTGGA 59 27882412 27882430 CATTGAAAGCCTTCTGCCT 58 NA Rattus norvegicus 81 Ccdc132 ENSRNOG00000009894 ENSRNOT00000067087 2 1 1 80 4 28542559 28542579 TTCAACCACATTTGGATGCTG 60 28542620 28543265 CAGTTGAGACTGTCTGGGAG 60 NA Rattus norvegicus 81 Chrm2 ENSRNOG00000046972 ENSRNOT00000075341 2 1 1 60 4 64089301 64089322 TGAACTTGTATACCCTCTACAC 57 64089343 64089361 TCACATACTACAGGTCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf11b ENSRNOG00000008336 ENSRNOT00000011344 1 1 1 80 7 93804107 93804128 GAAAGGAAATGCAACACATGAC 59 93802333 93804068 CACAGGGTGACATCTATTCCA 60 NA Rattus norvegicus 81 Spata1 ENSRNOG00000015678 ENSRNOT00000021063 3 1 1 80 2 252341313 252341332 GTCAAAGGATGAACCTGGAG 58 252336187 252341270 CTTTCCTCAGCTTCTTCGT 58 NA Rattus norvegicus 81 Ppil3 ENSRNOG00000013636 ENSRNOT00000018284 3 1 1 80 9 65318607 65318627 CGGATCTCAGTTCTTCATCAC 59 65315748 65318569 CCATCTATTACCTTTCCGAACAC 59 NA Rattus norvegicus 81 Cttnbp2 ENSRNOG00000061845 ENSRNOT00000087167 2 1 1 80 4 42951286 42957326 AGTCAGCAAGTTCAGAGGT 59 42951224 42951243 CTCCAGACAGAGATAACCCA 58 NA Rattus norvegicus 81 Spaca5 ENSRNOG00000045622 ENSRNOT00000075264 1 1 1 80 X 913102 915247 GGATTGTAATGACCTACTCAACC 59 913044 913068 ATACTCTTATGTGAGGATACAACCC 60 NA Rattus norvegicus 81 LOC100911586 ENSRNOG00000046315 ENSRNOT00000074062 1 1 1 60 10 45015521 45015542 CTCTATCATCACTCCTGTTCTG 58 45015563 45015581 CATGACCTCCTTGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb17 ENSRNOG00000039471 ENSRNOT00000040998 3 1 1 60 18 30564346 30564364 GAGTGCCTATTCTGTGCCT 60 30564387 30564406 CATACCTCTGACATCCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb2 ENSRNOG00000001409 ENSRNOT00000001911 2 1 1 84 12 22232580 22232602 ACATCTGCTCCATCTATAGTCTC 59 22232646 22232758 GAGAGGTACCCAGTATGGC 59 NA Rattus norvegicus 81 Gnb2 ENSRNOG00000001409 ENSRNOT00000001911 3 1 1 84 12 22232581 22232602 CATCTGCTCCATCTATAGTCTC 58 22232647 22232759 GGAGAGGTACCCAGTATGG 58 NA Rattus norvegicus 81 Metrn ENSRNOG00000019692 ENSRNOT00000026676 3 1 1 114 10 15165762 15165780 AACGTGCAGAAATGTCTCC 59 15164785 15164887 CCATGGATCACAAAGTCACTG 59 NA Rattus norvegicus 81 AABR07017733.1 ENSRNOG00000049583 ENSRNOT00000071781 3 1 1 85 15 30413526 30414814 CCTCTTCTTCACAGGTGTG 58 30414863 30414881 TAAAGGCACTGTCTCCCTC 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 2 2 2 80 2 243842533 243842551 AAACTTGGCAAGCAAACCT 59 243842591 243845251 ACTGGATATGGTTGTATAGAGCC 60 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859,ENSRNOT00000072538 2 2 2 80 15 106280722 106281909 GGAAGGAGAAGTTCATGCAG 59 106281950 106281970 CTTCCATGTCATTGAAGTCGG 59 NA Rattus norvegicus 81 LOC56764 ENSRNOG00000016432 ENSRNOT00000021984 1 1 1 80 2 252505222 252505243 TGTAGAGAACATTCAAGGACCA 59 252501288 252505183 ATCAATTTCCAACCACGTGAG 59 NA Rattus norvegicus 81 Olr458 ENSRNOG00000029578 ENSRNOT00000048041 2 1 1 60 3 73048842 73048863 TGATCTACTCAAGCATCATGTC 58 73048803 73048824 ATGTAACACCCAACTACTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072054.1 ENSRNOG00000046546 ENSRNOT00000019751 3 1 1 80 1 259972122 259973133 GACATTCAGGTTTCAAGTGGT 59 259973174 259973193 TTCGCTTACATTCACAACCT 58 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 3 2 2 80 12 17500921 17501927 ACCACCTGATGCTAAGACTG 60 17500860 17500883 CTAAGAACATCTTCCAAACTGGAG 60 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000082956 2 1 5 60 9 81662713 81662731 ACCAGCAAACCAATGAGGA 60 81662755 81662773 CATACAAACGAGCTGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000080961,ENSRNOT00000082956 3 2 5 60 9 81662930 81662948 GTACCAGGCATCACCTGAG 60 81662971 81662990 CAAGAGCAAAGGTGTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar3 ENSRNOG00000025982 ENSRNOT00000035539 1 1 1 60 1 22570092 22570110 CCACCAACTTCCTGATCCT 59 22570050 22570069 ATGATGACAAATCCCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.1 ENSRNOG00000047444 ENSRNOT00000070880 2 1 1 97 15 31032803 31032915 CTTTCTCCTGAGAGTTGCC 58 31032976 31032994 AATAGGTGCATCTCAGCTG 57 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090,ENSRNOT00000085684 1 2 2 80 7 40272377 40273621 GAAACTACCAAATTACGGCTC 57 40273662 40273681 ATGCCTTAAGTCCTCTACCT 58 NA Rattus norvegicus 81 Hmgb4 ENSRNOG00000032889 ENSRNOT00000044868 3 1 1 60 5 146445643 146445661 ATGCGAGCAAAGTACTTCC 58 146445601 146445620 TCTTACTGTTCTGGCATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000080241,ENSRNOT00000087636 1 3 3 80 2 62204098 62204121 TTATCATACGTATTCTCCGAGACC 60 62204159 62208289 CCAGTAACTCCATAGCCCAG 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000076379 1 2 4 113 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208573778 208573796 GAAAGACCCTTGTTGCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Katnal2 ENSRNOG00000017788 ENSRNOT00000048702 3 1 1 80 18 73327004 73327023 CGAGATGAGAACAGAAGCAC 59 73325859 73326964 GCATCCATATAGCCTTCTTGTG 59 NA Rattus norvegicus 81 Olr1288 ENSRNOG00000057310 ENSRNOT00000085764 1 1 1 60 15 35685383 35685403 CTATGTTGCCATCTGTAACCC 59 35685425 35685443 ACAGTGCTTCTCATCGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcor ENSRNOG00000034240 ENSRNOT00000041003 3 1 1 80 X 11679139 11679504 CTCCAAAGATGACTGGCCT 59 11679546 11679566 GTCAGCTCATTACAATGTGGG 59 NA Rattus norvegicus 81 Arid3c ENSRNOG00000013416 ENSRNOT00000046589 2 1 1 90 5 58113299 58113318 GATGTCCCAATTCACCATCC 59 58111550 58113246 TCGAGTTCATACAGCTGCT 59 NA Rattus norvegicus 81 Pcf11 ENSRNOG00000009891 ENSRNOT00000013552 3 1 1 80 1 157487815 157488137 ATAAATCGCCTGATGAGCC 58 157487753 157487773 TATCAGGTACAATGGGAGGAG 59 NA Rattus norvegicus 81 Olr1399 ENSRNOG00000049535 ENSRNOT00000050554 3 1 1 96 10 34756769 34756787 AACATCAAGTCCATGGCTG 58 34756846 34772406 ATGTGTAGATAGCTGAGCCA 58 NA Rattus norvegicus 81 LOC102552337 ENSRNOG00000045614 ENSRNOT00000034566 3 1 1 80 5 121453433 121453454 CGATGTAGATACTTTCAAGGCT 58 121453229 121453393 AGTTTACACCTCCTAGACCG 59 NA Rattus norvegicus 81 LOC317588 ENSRNOG00000030580 ENSRNOT00000049046 1 1 1 80 X 137949391 137949517 CGTTTAGAGAACCTACCTTTCTG 59 137949555 137949575 TCCTTTCTTTACATCGTGCTC 59 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 2 2 2 80 13 111159904 111159924 AGAATTCTACACAGCCTTCTC 58 111159966 111227053 CGGAACACAATCCTCTTCC 58 NA Rattus norvegicus 81 Adamts9 ENSRNOG00000023257 ENSRNOT00000057045 2 1 1 80 4 124822601 124823657 TGTTCTAGTCACAAGGGAGG 59 124822357 124822375 CAGATGGTTCCCAATTCGG 59 NA Rattus norvegicus 81 H2afy2 ENSRNOG00000024751 ENSRNOT00000033529 3 1 1 82 20 31376839 31376858 CTTTCAAGTACCGGATCAGC 59 31372729 31376795 CAACTCTAGGATTTCCGCTG 59 NA Rattus norvegicus 81 Eif5a2 ENSRNOG00000011859 ENSRNOT00000015779 1 1 1 82 2 115338310 115338832 GTCATGCCAAGGTACACCT 60 115338877 115338896 CATGTTGTGAGTGGAAGGAC 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 1 1 1 99 7 74327028 74327047 AGAAACCCAAACCTGTAGGA 59 74326945 74326966 ATATGACGAATGGACGCCA 59 NA DesignNoJunction Rattus norvegicus 81 RGD1565297 ENSRNOG00000001884 ENSRNOT00000002579 3 1 1 81 11 86894030 86894050 ATAAGGAGAAAGGGACCATCC 59 86894090 86896944 ATTGGTGTGATATAGTGGTTGG 58 NA Rattus norvegicus 81 Glrb ENSRNOG00000010199 ENSRNOT00000014170 3 1 1 80 2 179771432 179776750 CTTTGCAGGTTGGTGAGAC 59 179771370 179771391 CAACAATGCTGAAGTCATTGGA 60 NA Rattus norvegicus 81 Fam151b ENSRNOG00000024136 ENSRNOT00000031909 3 1 1 93 2 22038349 22039201 CTGAGAAAGTCAATGAAGGATACAC 60 22038280 22038298 CTGACAGGGAAGGTGACAG 60 NA Rattus norvegicus 81 Trappc2l ENSRNOG00000014581 ENSRNOT00000019740 2 1 1 80 19 55425978 55425999 GCATAACTCCTACACAGATGTG 59 55426038 55426862 ATGGTATCAAAGGCCCTAGAC 59 NA Rattus norvegicus 81 Lingo2 ENSRNOG00000005634 ENSRNOT00000007449 1 1 1 60 5 51468131 51468151 TATACCTGACCCACCTTAACC 59 51468091 51468111 AACATGCCTGCTTCAATAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 1 3 3 121 12 22753562 22753580 ATGACGACATCCGTAGAGG 59 22751134 22751550 TTCATATTCCTTGAGCCGGT 59 NA Rattus norvegicus 81 Olr1620 ENSRNOG00000030687 ENSRNOT00000047008 2 1 1 60 15 27401193 27401212 TCCCATCATCTTCATCTCCC 59 27401231 27401253 CAGGAAGTGGTCTATAATTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000075967 2 1 3 80 9 94542030 94542050 GATGATGCAGTGAAAGAGGTG 59 94542088 94543167 ACCTACAGATTTACTGAGACTGG 59 NA Rattus norvegicus 81 Fanca ENSRNOG00000016706 ENSRNOT00000022658 2 1 1 80 19 56083807 56083827 ACAGAGATTGGATTCAGTTGG 58 56082512 56083767 GGTGGAAGTCATGTCTTTCTG 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 1 2 2 80 10 37047185 37048072 TTTGGTCTCCAGGCTAAAGG 60 37048115 37048133 GGAGGCTTGAACTTCAGGA 59 NA Rattus norvegicus 81 Plod3 ENSRNOG00000001417 ENSRNOT00000001921 2 1 1 80 12 22725972 22725991 TGGCTCAAGAAGGAAATGGA 59 22725829 22725931 CAGAATCACATCGTAGCTGTC 59 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 3 2 3 86 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086531 GAGATACAACCTGCCAAATGTC 60 NA Rattus norvegicus 81 Ceacam16 ENSRNOG00000031391 ENSRNOT00000045306 3 1 1 80 1 80778610 80780089 ACCTGACGGTATACTTCGG 59 80778548 80778567 CCACTTTAATAGTGCAGCCT 58 NA Rattus norvegicus 81 RGD1564095 ENSRNOG00000040219 ENSRNOT00000061899 1 1 1 60 5 12407256 12407275 CAGCACAGGAGAAGAAAGAG 58 12407298 12407316 AATCCCATGTCGTCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 3 2 2 100 1 212539866 212539885 CCTTTGCTATGGCACTTCTG 59 212538619 212539804 GATCTTGTGCCGAAGTAGGA 60 NA Rattus norvegicus 81 Cadm4 ENSRNOG00000024243 ENSRNOT00000026793 1 1 1 93 1 81366696 81366805 CTGGATGTGCAGTATTCCC 58 81366862 81366880 CTGTGACAGCACATGTCAG 59 NA Rattus norvegicus 81 Cpne3 ENSRNOG00000006298 ENSRNOT00000008281 2 1 1 80 5 33559961 33559981 TGATCTAACGTCAAAGTCCGA 59 33559204 33559919 GTGCGTTCAACCTCATACC 59 NA Rattus norvegicus 81 Vom1r93 ENSRNOG00000055542 ENSRNOT00000084689 1 1 1 60 4 121778904 121778923 TTCTTCAAAGGCATCTCCAG 58 121778945 121778964 GAAACTCATAAGCAGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bahd1 ENSRNOG00000010428 ENSRNOT00000013878 1 1 1 80 3 110729169 110729188 ACATCAGGACCAGAACAGTG 60 110729230 110729916 GCACAGAATCTGCAGTACTC 59 NA Rattus norvegicus 81 Bahd1 ENSRNOG00000010428 ENSRNOT00000013878 2 1 1 80 3 110728389 110728408 AGCCTCCTGTGGTATTACAG 59 110728449 110729157 AACTTCATTCTGCAAAGGCTC 60 NA Rattus norvegicus 81 Shd ENSRNOG00000049983 ENSRNOT00000074767 1 1 1 80 9 11094374 11094466 GAACATCTCCAGCGAACAG 59 11094312 11094333 TCTTCTGGTTTCATATCCTGCT 59 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 1 2 2 80 13 80473036 80474206 ACTACAGGACAAATCAGAAAGC 59 80474247 80474265 CACATTTGCCTTCGAAGCT 59 NA Rattus norvegicus 81 Olr476 ENSRNOG00000009693 ENSRNOT00000012848 2 1 1 60 3 73400431 73400450 AGTTCTTTGACCACTGTCCT 59 73400390 73400409 GGATTCTCAAGATAGCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076235 1 1 3 60 X 72509917 72509935 CTCGGAACTCTGAGATGGG 59 72509875 72509896 TAATTCTACTTGTAGCAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565617 ENSRNOG00000047836 ENSRNOT00000043673 3 1 1 60 3 19320523 19320544 CCAGAATGTCGATAATTATGGC 58 19320484 19320502 CTGTCCTGGTTTCTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcat ENSRNOG00000010539 ENSRNOT00000013994 1 1 1 98 7 124420272 124420291 CATCGAGAACTGTGTTGCTG 60 124416636 124420211 ACTGCATACAGACCTTCCG 60 NA Rattus norvegicus 81 RGD1559493 ENSRNOG00000030914 ENSRNOT00000052130 3 1 1 80 5 126219715 126219733 GCAGAAGAAACCACAGAGC 59 126218063 126219675 GGATAATAATTCCCGATGAGTCC 59 NA Rattus norvegicus 81 Enkd1 ENSRNOG00000024364 ENSRNOT00000031033 1 1 1 82 19 37670982 37671091 ATCTGCTTCAGAGCCAGAG 59 37670918 37670937 GTAACCCTGAGCTCTCAGAG 59 NA Rattus norvegicus 81 Mrrf ENSRNOG00000025997 ENSRNOT00000033047 1 1 1 80 3 15486001 15505770 TACCCATTCCTAAAGTAACCAG 57 15505810 15505829 TTTCTTTGGCTTTGTTGGTG 58 NA Rattus norvegicus 81 Hdhd1 ENSRNOG00000025422 ENSRNOT00000037904 3 1 1 60 18 45380572 45380592 TACGGGAAGAAATACAACTGG 58 45380532 45380550 TTTCTGGAGCCTTCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910934 ENSRNOG00000049893 ENSRNOT00000071612 1 1 1 60 18 55392267 55392285 ATCCCTTCACTGACCTTCC 59 55392307 55392327 ACTTCAGGCATTTCTTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp276 ENSRNOG00000016631 ENSRNOT00000022324 1 1 1 80 19 56058244 56059293 TGACCTTTCTGAGGGAGAC 58 56059337 56059355 TCAAAGGACTCATCCGAGG 59 NA Rattus norvegicus 81 Lpcat4 ENSRNOG00000005058 ENSRNOT00000006776 2 1 1 80 3 103730274 103730379 CATCGTGGATGTAGAGTTCCT 59 103730421 103730439 ACGTTGTTGGCATAAAGGG 59 NA Rattus norvegicus 81 Sfpq ENSRNOG00000058461 ENSRNOT00000084202 3 1 1 80 5 145085578 145085680 ACATGGGAGATCCCTATGGT 60 145085718 145085741 GATTAGCTTCATAACCTATGCCAC 60 NA Rattus norvegicus 81 Pkmyt1 ENSRNOG00000003657 ENSRNOT00000004936 3 1 1 91 10 13070488 13070506 CCTGCAATATGGAACTGCC 59 13070561 13070706 AGAAGACAGACCAGCAGTG 59 NA Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 3 2 2 128 12 22732233 22732378 GAGGAGCAGAACCTGAGTG 60 22732468 22732488 ACAGCTTACACAGGTATACGG 60 NA Rattus norvegicus 81 Pygo1 ENSRNOG00000051813 ENSRNOT00000087114 2 1 1 90 8 79622283 79622301 GGACTGGATGGGTTAGGAG 59 79622355 79624085 GAGGAAAGGAAGCTCCCTG 60 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 2 2 2 80 1 191618308 191620047 GGAGTGAAGACGATGGAGG 60 191618246 191618266 CAGAAGATCTGGATGACAAGC 59 NA Rattus norvegicus 81 Diras1 ENSRNOG00000029738 ENSRNOT00000046078 1 1 1 60 7 11559348 11559366 TTCGTGACACTTACATCCC 57 11559390 11559408 TTGTCACAGCTGATCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr867 ENSRNOG00000057338 ENSRNOT00000089549 2 1 1 60 5 137874576 137874596 GTCTTCCTTCTCCTCTACCTG 59 137874536 137874554 AGACCAGCACGATGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cited4 ENSRNOG00000046607 ENSRNOT00000072427 3 1 1 217 5 139597963 139597981 CTACTGCCTGCTACAGGTG 60 139598162 139598180 TAGCTGCAGACTGAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mogat3 ENSRNOG00000029211 ENSRNOT00000050456 1 1 1 80 12 22709731 22709750 CACATTTACTCATGCTGCCA 59 22709531 22709690 CAGAAGAGACTAAACCACTGG 58 NA Rattus norvegicus 81 RGD1562601 ENSRNOG00000048518 ENSRNOT00000048420 1 1 1 60 17 74679588 74679609 TACATGCGAATCTACAAGAAGG 58 74679549 74679567 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562601 ENSRNOG00000048518 ENSRNOT00000048420 3 1 1 60 17 74679258 74679276 GTGAGGACTAACGGGAAGG 60 74679216 74679234 AGGCCATGAATTCGTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2280.3 ENSRNOG00000049591 ENSRNOT00000074779 1 1 1 60 2 208514380 208514399 TGAGAGTTCTAGAGCACTGG 59 208514339 208514357 AACGTCATCATCTCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Notum ENSRNOG00000036680 ENSRNOT00000054947 1 1 1 80 10 109837586 109837604 TGACTCCAGATACAGCACC 59 109837256 109837545 GATAGAATACCAGTACCTGTGC 58 NA Rattus norvegicus 81 Tmem132e ENSRNOG00000007455 ENSRNOT00000055999 3 1 1 80 10 69783830 69785596 ACACTTAGGGTGAAAGCCA 59 69785640 69785658 CTCTGAAGTCACATGCCAC 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473,ENSRNOT00000012397 3 2 2 80 4 152297992 152298013 ATATTGAGGTGCTGAAAGAGTC 58 152282182 152297951 ATCGAAGAGCATCCACCTC 59 NA Rattus norvegicus 81 LOC688708 ENSRNOG00000022305 ENSRNOT00000044108 2 1 1 80 10 612111 613081 GTGGATTACAGGGATGATGGT 60 612051 612074 GTGTCCTCTTTATTCAATGACCAG 60 NA Rattus norvegicus 81 Diras2 ENSRNOG00000032328 ENSRNOT00000044842 3 1 1 60 17 12762891 12762909 CATCCCAACTGTGGAAGAC 58 12762932 12762951 CGTACAGATGCTCTTGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686411 ENSRNOG00000049738 ENSRNOT00000072579 1 1 1 96 1 225628506 225631413 GCTATGAAACTAATGCTGGC 57 225628429 225628447 TCAAGTTCCTTCCTCAGGT 58 NA Rattus norvegicus 81 Fubp1 ENSRNOG00000043370 ENSRNOT00000066199 2 1 1 80 2 257443379 257445027 ACAAGGTAACTACGGAGATCAG 59 257445066 257445086 TTGTAGTACTCTTCCCAAGCC 60 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 1 2 2 80 8 55045945 55045966 AGAACTAGAGAAGCAAATGGAG 58 55044508 55045904 CTTCTCATCCGACTTGAGC 58 NA Rattus norvegicus 81 AABR07060979.1 ENSRNOG00000030177 ENSRNOT00000048263 1 1 1 81 4 102124173 102124573 CTCTGGATCCAGGAAACCAG 60 102124111 102124129 AGACTGACTGTCCAATGGC 60 NA Rattus norvegicus 81 Dnajc2 ENSRNOG00000012392 ENSRNOT00000016909 1 1 1 80 4 9896415 9898212 AAAGCAGAATGTCGTGATGAG 59 9898250 9898272 CATCTCTTCCTTCTTCCTTTGTG 60 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000022441 1 1 2 119 1 78820433 78821652 AATGGGATCTGCAGTCCTG 60 78821735 78821753 TGTTCACCTCCAGCTTCAG 60 NA InUTR Rattus norvegicus 81 Olr663 ENSRNOG00000047879 ENSRNOT00000049513 2 1 1 60 3 77525219 77525239 GAAGGATGCATGATACAGCTC 59 77525179 77525199 AGACAATCACTTCTACTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem165 ENSRNOG00000002199 ENSRNOT00000003010 2 1 1 80 14 34507745 34507764 TAACATTCTTGGCGGAATGG 59 34504500 34507702 CCACACCATAGGGATCCTC 59 NA Rattus norvegicus 81 Nrip3 ENSRNOG00000013290 ENSRNOT00000065288 3 1 1 80 1 174393289 174393307 AGTAGGCCAGATTGAGCAC 60 174389311 174393246 TCATTGTCATCAACCACAGC 59 NA Rattus norvegicus 81 Usp35 ENSRNOG00000024961 ENSRNOT00000031161 1 1 1 80 1 162289819 162289837 TGGTTTGATCAACTTGGGC 59 162288713 162289775 CAGTGTCGAAAGTCAGAGG 58 NA Rattus norvegicus 81 Tll1 ENSRNOG00000033528 ENSRNOT00000065642 2 1 1 80 16 27484024 27487410 CTTGGACATATCACAGGTGG 58 27487448 27487471 GATCCTGTCTATAAGTTGGTAGAG 58 NA Rattus norvegicus 81 Psmb11 ENSRNOG00000047091 ENSRNOT00000073767 1 1 1 60 15 33271859 33271877 TGGAACTAGAGGAGGTGAC 58 33271900 33271919 CACATTGTTTCGGTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfaip8l2 ENSRNOG00000021100 ENSRNOT00000028642 2 1 1 80 2 196312692 196323738 AGATCATGATTTGTTGGGCTG 59 196312632 196312650 TACCTACTCTCCACCTCCG 60 NA InUTR Rattus norvegicus 81 Tnfaip8l2 ENSRNOG00000021100 ENSRNOT00000028642 3 1 1 80 2 196312691 196323735 TCATGATTTGTTGGGCTGC 59 196312629 196312647 GCCTACCTACTCTCCACCT 60 NA InUTR Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 2 5 9 74 9 81537290 81543845 AGGAGTTCAAAGAAGGACGA 59 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Mc4r ENSRNOG00000018692 ENSRNOT00000025223 3 1 1 60 18 62613543 62613561 GTGTTTGTTGTCTGCTGGG 60 62613501 62613522 GAGGACAAGAGATGTAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pih1d2 ENSRNOG00000009965 ENSRNOT00000013242 2 1 1 82 8 55052879 55052897 CAATCAGCCACTCATCCTG 58 55052940 55054196 TCAATGATGGTACAAGCATCTG 59 NA Rattus norvegicus 81 Srsf5 ENSRNOG00000005513 ENSRNOT00000007583 3 1 1 80 6 104612100 104612121 AAGATTCTTCAAGGGTTACGGA 60 104612161 104612577 CTTGGGTCCTCAAATTCCAC 59 NA Rattus norvegicus 81 Pou5f1 ENSRNOG00000046487 ENSRNOT00000084526 1 1 1 80 20 3748921 3748941 GCTGAAACAGAAGAGGATCAC 59 3748652 3748881 AACACCTTTCCAAAGAGAACG 59 NA Rattus norvegicus 81 Nckap1 ENSRNOG00000007518 ENSRNOT00000064851 3 1 1 80 3 67773714 67773733 CGGATTGAAGAAAGGAAGGC 59 67773575 67773672 GTATTCTCGGTCACTTGCTC 59 NA Rattus norvegicus 81 Maob ENSRNOG00000029778 ENSRNOT00000044009 3 1 1 80 X 6506796 6506815 GTTCCTGTGGTATGTGAAGC 59 6506854 6508005 ATAAATTTCCTCTCCTGTCCTCC 60 NA Rattus norvegicus 81 Als2cr11 ENSRNOG00000012637 ENSRNOT00000017517 1 1 1 80 9 65841299 65841320 TAGAAGAGCTTGAAAGAACGAC 59 65834002 65835129 CACTGTAATCCACTAACTCGT 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 3 2 3 80 5 159956691 159957082 TTCAACAGTGAACAGGAGAC 58 159956630 159956650 GATCTCTGGTAAGTCAAAGGG 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 1 2 2 80 1 218725621 218727744 CTCATCAAAGGTCTTCCCGA 60 218725560 218725578 CCTCTTGTTCGCTTCTCCT 59 NA Rattus norvegicus 81 P4ha3 ENSRNOG00000017118 ENSRNOT00000046943 1 1 1 80 1 165311127 165315156 GTTCCTTGTCTACAGCCCA 59 165315199 165315218 TGACCATTCTCAGCCAAGAG 60 NA Rattus norvegicus 81 AABR07051678.1 ENSRNOG00000048541 ENSRNOT00000074445 2 1 1 85 3 19174316 19174334 AGAAGGTCACCATCACCTG 59 19174382 19174412 AATCCAGGGTTTAGGGTTCG 60 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600,ENSRNOT00000041639 3 2 2 108 14 77326630 77328658 CAGCCAGTATTTCAGGAGTC 58 77328729 77328747 CATGAAGTCCAGGATCTGC 58 NA Rattus norvegicus 81 Gpr119 ENSRNOG00000024517 ENSRNOT00000033619 3 1 1 80 X 135516849 135519494 AGGTAGGAAGAAAGACGCT 58 135516787 135516805 CATCACATGTGTACAGCGT 58 NA Rattus norvegicus 81 Pabpn1l ENSRNOG00000029558 ENSRNOT00000045052 3 1 1 80 19 55433574 55433592 AGTGTACAGAGAAAGGCCA 58 55433231 55433530 GAAGAAGCAGCCTATGGTC 58 NA Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 3 1 1 71 3 165692663 165693412 TAACTGCTGCTATCCAGGC 60 165692610 165692628 ATTCTTAAGTGGCGGTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Zmat3 ENSRNOG00000010119 ENSRNOT00000013858 3 1 1 84 2 118723884 118724019 TCATTCTCGGACTCTGCAG 59 118723818 118723836 TATTCCTCCTGGTGGTCAC 58 NA Rattus norvegicus 81 Chtf8 ENSRNOG00000047246 ENSRNOT00000070822 3 1 1 99 19 39080435 39080852 TACACCACTGAGGGAATCC 58 39080354 39080372 TGTGTTTGACAAGGACTGC 59 NA Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 2 1 1 63 4 149880319 149881912 AATGTGATGACAGAAGCCCA 60 149881938 149881956 AATCCCAGCTTGAGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617,ENSRNOT00000084760 1 2 2 81 1 281818943 281825355 TTTACCAGAGGTGACCAGTC 59 281818510 281818528 CTCTGGAACTTGCACAAGC 60 NA Rattus norvegicus 81 Hist1h1b ENSRNOG00000060355 ENSRNOT00000091688 3 1 1 60 17 44766451 44766470 GTTTCTGCCTCTAAAGAGCG 59 44766493 44766511 CAGCCAATGCCTTCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-350-1 ENSRNOG00000048587 ENSRNOT00000074854 3 1 1 64 13 94849874 94849892 TAAAGTGCACGTGCTTTGG 59 94849828 94849846 AGGGTGAAAGTGTATGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hp ENSRNOG00000014964 ENSRNOT00000020197 2 1 1 80 19 42098367 42098386 TATGTGGAACACTTGGTTCG 58 42098424 42099066 GTTTAAGGTGTAGATTCCATCTCC 59 NA Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 1 2 2 81 X 14506269 14530135 CATTACTACTGGAAGATGCGT 58 14530178 14530196 GGCTAAGATGTTGCAACGT 59 NA Rattus norvegicus 81 Wbp4 ENSRNOG00000011678 ENSRNOT00000015605 2 1 1 80 15 61764426 61764446 CTTCTAAGGGTAGATGGGTGG 59 61762614 61764384 ACTGAGATGCTCCTGTGAC 59 NA Rattus norvegicus 81 Olr1660 ENSRNOG00000057176 ENSRNOT00000086536 2 1 1 60 17 45670948 45670968 CTGTGATGAAGATCAAGTCGG 59 45670987 45671008 TGGGAACCACATGTATTAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apln ENSRNOG00000003984 ENSRNOT00000005331 2 1 1 114 X 134859923 134859941 CCAGAACTTCGAGGACTGG 60 134859213 134859849 CCTTCAATCCTGCTTTAGAAAGG 60 NA InUTR Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 3 2 2 80 10 86981067 86982670 ATCCCACAGAAAGAACTGGG 60 86981006 86981026 GGATATCTTCAGGCAAGAGGT 59 NA Rattus norvegicus 81 Sema3d ENSRNOG00000007202 ENSRNOT00000009489 1 1 1 80 4 19232711 19232732 TATACCTAAATCCCAACAAGCC 58 19226836 19232670 TCGGGTTTCAACTCTTCTC 57 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844,ENSRNOT00000002837 1 2 2 80 14 33143412 33143433 AATGTGAACTGTGTCCTTACTC 58 33137673 33143371 ATGGCTTCTCACCTGAGTG 59 NA Rattus norvegicus 81 Arl1 ENSRNOG00000005763 ENSRNOT00000007623 2 1 1 80 7 29284512 29286910 GTTACTACCATTCCCACTATTGG 59 29286950 29286968 GCCTAAGTCCCAAACTTGG 59 NA Rattus norvegicus 81 Commd3 ENSRNOG00000016383 ENSRNOT00000022201 1 1 1 80 17 85357780 85357798 CCGAGAGCGAATAGAACTG 58 85357939 85358288 CTACCTATACTTCCCAGTAGGA 57 NA Rattus norvegicus 81 Alg12 ENSRNOG00000004591 ENSRNOT00000065848 1 1 1 80 7 129799740 129799759 GTGTCCCATTTCAACTACCC 59 129799597 129799699 TACAAGGACATCTGTCTGAGG 59 NA Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 1 2 2 83 12 24148710 24148728 TTCTACTCCTGGTAGCCTG 58 24148982 24149000 AAATAAAGGTCACGCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871,ENSRNOT00000051512,ENSRNOT00000044972 2 3 3 80 13 49367263 49367281 GGAATGGGATCACCCAGAG 60 49366337 49367221 AGTTTGGTTCCATTAAAGGGC 59 NA Rattus norvegicus 81 RGD1562218 ENSRNOG00000019169 ENSRNOT00000025948 2 1 1 201 19 57604957 57604975 AAGAAAGAGTCCTGGAGCG 59 57603520 57603967 TTGGATCTCCTGTCCTCCT 59 NA DesignRelaxed Rattus norvegicus 81 Aard ENSRNOG00000004708 ENSRNOT00000006257 2 1 1 60 7 91592474 91592492 AGAAGAGACAGGACCAGGA 59 91592516 91592534 TTCATCTCCTCGTCTTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txk ENSRNOG00000025925 ENSRNOT00000035623 1 1 1 80 14 38046365 38046388 GCAGAGGAATATCTGATATTGGAG 59 38046425 38048869 GATTAAGCCTTCATTCCCGAG 59 NA Rattus norvegicus 81 Npff ENSRNOG00000047739 ENSRNOT00000074497 2 1 1 108 7 144127451 144127469 AGACAGGATCCAGACTCCT 59 144127259 144127379 ATTTCTGCCAAACCTCTGG 58 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 1 2 4 63 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139592 81143905 ATTCTTGCCTCCCACTGAG 59 NA DesignRelaxed Rattus norvegicus 81 Ankrd29 ENSRNOG00000046744 ENSRNOT00000073811 2 1 1 60 18 3676133 3676154 ATGAACATATACTGCACCTCCT 59 3676094 3676113 GATCCGAGTTCATTCTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas1 ENSRNOG00000050485 ENSRNOT00000073271 1 1 1 95 17 4847602 4847620 TCGGTCAAGGAGAACATGG 59 4847679 4847697 GTAGTAGTCGTCTAGGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamtsl5 ENSRNOG00000033787 ENSRNOT00000060811 1 1 1 164 7 12229457 12230185 CTCTGAGCAACTGACCCTC 60 12231608 12231626 AGAATCGGAGTGAACTGCC 60 NA InUTR Rattus norvegicus 81 Adamtsl5 ENSRNOG00000033787 ENSRNOT00000060811 3 1 1 176 7 12229457 12230185 CTCTGAGCAACTGACCCTC 60 12231620 12231638 GCAGTGATCAGCAGAATCG 59 NA InUTR Rattus norvegicus 81 Scrib ENSRNOG00000032574 ENSRNOT00000045280 3 1 1 80 7 117117679 117117698 AGAACCTCTGCTACCTAGAC 58 117116750 117117636 AGGCAAATTTCCTCCACAG 58 NA Rattus norvegicus 81 Cdh9 ENSRNOG00000033837 ENSRNOT00000043050 1 1 1 80 2 67049328 67049346 ACATCAACGACAATGAGCC 59 67049389 67053416 CAGAGGTACCAACTCCAGAC 60 NA Rattus norvegicus 81 AC139642.2 ENSRNOG00000021723 ENSRNOT00000032477 2 1 1 63 4 118342123 118342141 GAAACAGCCCAAGAAGCAG 60 118342078 118342097 TTGTTTCTGCTTGAAAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fignl1 ENSRNOG00000004440 ENSRNOT00000005857 1 1 1 102 14 91901803 91901824 GGTCATAATCAGCAGAGTTCTC 59 91898559 91898577 TCTTCTGCCAGTCATCCAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adprm ENSRNOG00000003397 ENSRNOT00000004560 2 1 1 80 10 53585532 53586727 TAGTCCTCAAGGACTTTCTGAG 59 53585473 53585491 TCGTTCAACCAGTTCAGCT 60 NA Rattus norvegicus 81 Sipa1 ENSRNOG00000020726 ENSRNOT00000028137 1 1 1 80 1 221011508 221014192 CTAGATGAGCAAGTGCTGAG 58 221011447 221011465 CATCTCTTCCTCAGAGCCT 58 NA Rattus norvegicus 81 Tsc22d3 ENSRNOG00000056135 ENSRNOT00000085118 2 1 1 81 X 111887634 111887653 TGCACAATTTCTCCATCTCC 58 111886886 111887590 CCAGAGGCACTGTTATCCA 59 NA Rattus norvegicus 81 Mrpl47 ENSRNOG00000011639 ENSRNOT00000015864 2 1 1 85 2 119136789 119136807 CCACGTTGTCAAGGAAAGG 59 119136251 119136742 CCATGAAGCTCCAGATTTGAC 59 NA Rattus norvegicus 81 Mrpl47 ENSRNOG00000011639 ENSRNOT00000015864 3 1 1 89 2 119133176 119133194 TTTAAGGCTGCTTCAGACC 58 119131773 119133123 TTGAATTTGTGCCAGACGA 58 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 2 2 2 80 11 69018517 69019950 TAGAGTCTGAAGAAGATGTCTCC 59 69018459 69018481 TAGAGAAGTAGGGCTTTACATGG 60 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 3 2 2 80 1 64125489 64126168 TCTGATCGTCTCTAGCATCC 59 64126210 64126229 CGTTTGAGCTCAGAGATGAG 59 NA Rattus norvegicus 81 Kmt2c ENSRNOG00000007997 ENSRNOT00000010349 3 1 1 80 4 6283393 6284838 TAGCTGAGTCACTACCTGG 58 6284881 6284900 GAGGAAGTTCCATGAGAGGA 59 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 2 1 1 61 5 126087287 126092302 CTACAGGCCTCCTAAGGAG 58 126087244 126087262 CCAGTGGACAGTACATGGT 59 NA DesignNoJunction Rattus norvegicus 81 Tgm1 ENSRNOG00000020136 ENSRNOT00000027315 1 1 1 80 15 34390084 34390105 CACATAATCCTCTTCCTGAACC 59 34389133 34390045 CTCAGGATTGTTTCCGATGAG 59 NA Rattus norvegicus 81 Olr260 ENSRNOG00000047602 ENSRNOT00000049903 3 1 1 60 1 172600018 172600037 TCTTCCCAAATATGCCTCCT 59 172600060 172600078 ATGCGTTAATACAGCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059478.1 ENSRNOG00000047774 ENSRNOT00000075169 1 1 1 80 4 21051554 21051772 TGTATAATAAGGGCATGGCCA 59 21051494 21051516 CACTGACCAGAACTACATAATCC 59 NA Rattus norvegicus 81 Zfp580 ENSRNOG00000016274 ENSRNOT00000021772 1 1 1 255 1 72339270 72339288 CTCCACTTCTTCCTCGGTG 60 72339033 72339051 AGTAAAGGGCTTGAGGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgk1 ENSRNOG00000058249 ENSRNOT00000077604 3 1 1 80 X 77274230 77274248 GAGCTGAACTACTTTGCCA 58 77274292 77275381 GTCTGCAACTTTAGCTCCT 58 NA Rattus norvegicus 81 Rnpepl1 ENSRNOG00000045775 ENSRNOT00000071411 3 1 1 80 9 100086523 100086543 TGTTTCGTCTACTACCTGTCC 59 100086582 100086876 GTATTTCTCCACATAGGCTCTG 59 NA Rattus norvegicus 81 Tas2r134 ENSRNOG00000027510 ENSRNOT00000030442 3 1 1 60 3 37147772 37147790 GAGTCGTGAATGTCCACAG 58 37147813 37147832 ATGCCCATGTAGGTTATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562165 ENSRNOG00000027547 ENSRNOT00000029187 1 1 1 60 5 72000024 72000042 TTGTTTGTGGGCAAGACAG 59 71999982 72000000 CCTTCTCGTAAAGCTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562165 ENSRNOG00000027547 ENSRNOT00000029187 3 1 1 60 5 71999987 72000008 TAACTATGGGACAGCTTTACGA 59 71999948 71999968 TAGGCCACATACAAGAATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arf5 ENSRNOG00000007806 ENSRNOT00000010429 3 1 1 80 4 55715895 55716435 ATCCTTATGGTTGGCTTGG 58 55716479 55716497 GATGGTGGTGACAATCTCC 58 NA Rattus norvegicus 81 Cnp ENSRNOG00000017496 ENSRNOT00000023872 2 1 1 80 10 88494669 88494690 CACTGTACAACCAAATTCTGTG 58 88494731 88495963 AGATCTCCTCACCACATCC 58 NA Rattus norvegicus 81 Fam19a5 ENSRNOG00000049349 ENSRNOT00000074625 3 1 1 136 7 128648581 128648599 AGATTGTGACCCTAGACCG 59 128648698 128690777 GATAATTCGAGCGTCCACAC 59 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 1 2 2 80 8 72221760 72221778 TCCAAGTCAGTTCAGAAGC 57 72210882 72221716 AAGCTGCGAAGACAATCTC 58 NA Rattus norvegicus 81 AABR07017825.3 ENSRNOG00000048128 ENSRNOT00000072946 1 1 1 60 15 31462833 31462949 GGGATAAACTTTCTCCTGAGAG 58 31462967 31462988 CATGAACATCAGGTTGAGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077,ENSRNOT00000038973 1 2 2 80 7 98532651 98532674 GGAAGATACAGATTGGAAAGAAGG 59 98532711 98534287 AAGACTCCACCATTTCCTCAG 60 NA Rattus norvegicus 81 AABR07022022.1 ENSRNOG00000023547 ENSRNOT00000034990 2 1 1 60 13 103080528 103080546 CATGTCTGTGATGGGTGTG 59 103080486 103080505 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usb1 ENSRNOG00000013216 ENSRNOT00000017960 3 1 1 80 19 10109172 10109191 TCCTGGACATGGTTTCAGAG 60 10107837 10109130 CATGAAATGAAGGGTCCTGG 59 NA Rattus norvegicus 81 Hs3st5 ENSRNOG00000000605 ENSRNOT00000000743 3 1 1 148 20 40539599 40543724 GAGCTTGGATAGGCTCCAG 60 40543835 40543854 GTACCTGCTCCTTGGAAGAG 60 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 1 2 2 80 2 93795219 93795239 ACCGAGATTTCCTTCAAACTG 59 93795279 93795890 CAGGGTTATGATGCTCTTCAC 59 NA Rattus norvegicus 81 Sppl2b ENSRNOG00000057881 ENSRNOT00000084144 1 1 1 80 7 11718844 11719641 CATGACCTCAACAAAGTGTCTC 60 11718785 11718803 TACAGGAACATCGAGGTGG 59 NA Rattus norvegicus 81 Sash3 ENSRNOG00000004409 ENSRNOT00000006035 1 1 1 80 X 134992323 134992341 GCTCAACATCATGGACCCT 60 134992384 134992902 TCACTGCCAGTGTCATAGTC 60 NA Rattus norvegicus 81 Anxa1 ENSRNOG00000017469 ENSRNOT00000023664 1 1 1 80 1 237897341 237897360 ACATGACATGAACAAAGCCC 59 237896340 237897298 GTGGCACACTTCACAATGG 60 NA Rattus norvegicus 81 Vom1r110 ENSRNOG00000060529 ENSRNOT00000078889 2 1 1 60 1 63185408 63185426 CTCACCAGAATCTCAAGCC 58 63185450 63185468 AAATGCCAGGAAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r7 ENSRNOG00000016974 ENSRNOT00000022854 1 1 1 80 9 100491713 100495522 CTCAGTATGCAGAGCAACC 58 100495565 100495584 GTGGCTGAGGTATAGTTCAC 58 NA Rattus norvegicus 81 Clmn ENSRNOG00000011044 ENSRNOT00000065529 3 1 1 80 6 128489132 128489150 TCTAGAGAAGGCATTCCGC 59 128487379 128489090 ATGTCAACCATGATGTCTTCC 58 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202,ENSRNOT00000079176 1 2 2 94 12 30144014 30144032 AATGAAGAGCCACAAGCTG 59 30126321 30136745 TCTCTTCCACCATCAGCTG 59 NA Rattus norvegicus 81 LOC498231 ENSRNOG00000029418 ENSRNOT00000051824 2 1 1 80 13 50250724 50250745 AAGCAAGATTCCATTGTCAAGG 60 50247857 50250683 AGAACTGGGCCTAAGTCTG 59 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600,ENSRNOT00000034553 2 2 2 81 1 81685452 81685475 CTGGAATCTACCACCTAAATATCC 58 81685511 81689071 CTTAACAGAGGGTACACAAAGAC 59 NA Rattus norvegicus 81 Hist1h4m ENSRNOG00000057690 ENSRNOT00000091201 3 1 1 156 17 44815831 44815849 CCTCATCTACGAGGAGACC 58 44815693 44815711 GAAGCCATAGAGGGTACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686911 ENSRNOG00000050100 ENSRNOT00000072588 2 1 1 86 14 34194475 34204665 AGCAGATACGGACAATCCA 59 34194407 34194425 AAGGAGTACTTGGAGGCAC 59 NA Rattus norvegicus 81 Phlda1 ENSRNOG00000004019 ENSRNOT00000005361 2 1 1 151 7 54248590 54248608 CTCATCCACACCAACTCCA 59 54249117 54249135 ATGCACTCTTCCCACTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 2 2 2 80 18 2081781 2081800 GTTCTTTGTGTTCTCCTCGT 58 2081840 2083608 CACATTCTTCAATCTTCGTCCT 59 NA Rattus norvegicus 81 Zbtb26 ENSRNOG00000009346 ENSRNOT00000012433 3 1 1 134 3 21697893 21697911 CTTTGGCTCAGGTTGTCTG 59 21689983 21690004 TGAAGGAGATCTGATCTTTCAG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_2_2053.2 ENSRNOG00000017461 ENSRNOT00000023482 2 1 1 60 2 185805402 185805420 CAGCTAGTGTAGGCATCCA 59 185805360 185805379 ATCCACTTAGGGTTGGTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chchd1 ENSRNOG00000009297 ENSRNOT00000012372 2 1 1 83 15 4026331 4026349 GAATGAATTCCGCGACGAG 60 4025736 4026284 ATCTTCCCAGCTTCCTGAG 59 NA Rattus norvegicus 81 Rnft1 ENSRNOG00000003805 ENSRNOT00000005064 1 1 1 89 10 73815541 73817288 CACGACCAAGTTATGGAGTG 59 73817338 73817358 GCTTCTGAAATTCAGCTTGAC 58 NA Rattus norvegicus 81 Leng9 ENSRNOG00000018621 ENSRNOT00000025138 1 1 1 60 1 73721736 73721754 GGGCAATCAAAGAGACCAG 59 73721837 73721856 CCATCTACTTCCGGTGTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Leng9 ENSRNOG00000018621 ENSRNOT00000025138 2 1 1 61 1 73721736 73721754 GGGCAATCAAAGAGACCAG 59 73721839 73721857 CCCATCTACTTCCGGTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Disc1 ENSRNOG00000019779 ENSRNOT00000057945 1 1 1 80 19 57925323 57925341 GAGGAAGAGACTCGCTGAC 60 57925385 57932837 AAGCAGCTTCCTGATAGGG 59 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204,ENSRNOT00000083181,ENSRNOT00000079694 2 3 3 80 2 240642915 240642933 ACAATGTTCTGCAGGTCCA 60 240643070 240648124 TGATATGGGCTGTCATTAGGTC 60 NA Rattus norvegicus 81 AABR07027811.3 ENSRNOG00000053155 ENSRNOT00000052073 1 1 1 63 17 44760227 44760245 TCGACAGAGTTGCTGATCC 60 44760272 44760290 AGTCCTGAGCAATCTCACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pax3 ENSRNOG00000013670 ENSRNOT00000018652 2 1 1 80 9 84097936 84097957 GTTTAGCTGGGAAATCAGAGAC 59 84096718 84097896 CTGATGGAACTCACTGAGGG 60 NA Rattus norvegicus 81 Olr479 ENSRNOG00000049794 ENSRNOT00000012872 1 1 1 60 3 73456542 73456562 GTAACATTTCAGCAGTGTCTC 57 73456502 73456520 TCAAGTCCTGGGTCATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552939 ENSRNOG00000028712 ENSRNOT00000033631 3 1 1 82 18 68752551 68753237 TGAACTGCATCAGGTTACG 58 68752487 68752505 CTGTGGCAACTAGACAAGC 59 NA Rattus norvegicus 81 Blcap ENSRNOG00000024437 ENSRNOT00000033525 3 1 1 60 3 154041784 154041803 GAAACCTTGCACGATATGTG 58 154041743 154041764 GCTATAGCAGATGAGAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr844 ENSRNOG00000049850 ENSRNOT00000074390 2 1 1 60 5 69305599 69305619 GCAAAGAGGTGTATGTATCCA 58 69305639 69305659 ACTGAGTTGATTCCACCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata33 ENSRNOG00000038239 ENSRNOT00000058216 1 1 1 80 19 56010231 56010331 AGAGAAGAAAGTTGAGGAGGA 58 56010369 56010391 GTCTCCTTCTCCATTACTTTCTC 58 NA Rattus norvegicus 81 Psmc4 ENSRNOG00000018994 ENSRNOT00000025819 3 1 1 80 1 84983427 84983536 GAGCTCTACAAGCAGATTGG 59 84983366 84983385 TAACATGGTCTTTCCACAGC 58 NA Rattus norvegicus 81 Olr1597 ENSRNOG00000003555 ENSRNOT00000004719 2 1 1 60 13 92342951 92342970 GAATCATCCCACGAATGCTC 59 92342910 92342931 CCCATAAAGGAAATCACCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1600 ENSRNOG00000047062 ENSRNOT00000050469 1 1 1 60 13 92376954 92376972 GGCTTCTCTGTTTACCCAC 58 92376994 92377014 TATACAGGCAAAGGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000064122 3 1 2 80 7 98679992 98680010 TCTTCCACAATGCGATACC 58 98675864 98679949 ATTCAATTTGGGTTCCTGCA 58 NA Rattus norvegicus 81 RGD1311575 ENSRNOG00000002139 ENSRNOT00000002908 2 1 1 80 14 33668287 33668307 CCAGTGATACACCAAGTTCCT 60 33665515 33668245 TAACCGGAGCAACCTTCTC 59 NA Rattus norvegicus 81 AABR07054264.1 ENSRNOG00000050337 ENSRNOT00000075257 3 1 1 80 3 145764989 145765008 CTGGATCCTTCCCAGAAGAG 59 145765051 145765396 CCAATTGTTGCCTACAGCA 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 3 2 4 134 2 118563058 118563076 ACTGTGACAGCTCTGAAGG 59 118563173 118565900 TTCTGTCCATACACTCTGCA 59 NA Rattus norvegicus 81 Mtmr14 ENSRNOG00000007881 ENSRNOT00000010723 3 1 1 80 4 145217757 145218281 AACTGGAAGCAGGACTACG 59 145218323 145218343 CTGGCTCCAGTCAATATTCAG 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166,ENSRNOT00000082791 1 2 2 86 4 109474246 109474264 ATCTTTGTGTCCTCCCTGG 59 109473598 109474197 CATTGTGCCATGTGAAAGAC 58 NA Rattus norvegicus 81 LOC100911319 ENSRNOG00000005067 ENSRNOT00000006725 2 1 1 60 6 7420674 7421186 ACTTCTTGTGCAAGACGGA 60 7420632 7420651 TTGTCCAGCATGTTGTTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 1 2 2 80 X 134777159 134777179 GCTTAATGACACCCAATACTG 57 134777220 134777481 TCTATTGTCTCGTTTGGCTC 58 NA Rattus norvegicus 81 Olr1609 ENSRNOG00000012526 ENSRNOT00000016702 1 1 1 60 15 27031834 27031852 CCTCCTACATTGTGGTGCT 59 27031792 27031812 GCCTTAGATGACCCAATTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd1 ENSRNOG00000023688 ENSRNOT00000030893 3 1 1 60 17 11101740 11101759 AGCCCTTTCCAGTATGAGAG 59 11101780 11101800 CTACGCTAATCAGGATGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March6 ENSRNOG00000011066 ENSRNOT00000028561 3 1 1 80 2 84562436 84562457 TCCAGTACAGGAAATGATTCAC 58 84562181 84562396 ATGGAGCCAAAGACAATCAC 59 NA Rattus norvegicus 81 Ago2 ENSRNOG00000008533 ENSRNOT00000011898 3 1 1 80 7 114356900 114357048 AGATCAGCAAATTGATGCGA 58 114356839 114356859 TCTCATCTTTCACCATGATCC 58 NA Rattus norvegicus 81 Dio1 ENSRNOG00000061237 ENSRNOT00000091521 2 1 1 88 5 126902194 126911186 TTCATTCAAGGCAGCAGAC 59 126902121 126902139 ACGAGTCTCTTGAACTGGT 58 NA Rattus norvegicus 81 Fam89a ENSRNOG00000019022 ENSRNOT00000025705 1 1 1 80 19 57503353 57514614 CAAGGAGATGGTTGGTCTC 58 57503291 57503309 TACTCCTGAATGGACTCGT 57 NA Rattus norvegicus 81 RGD1561310 ENSRNOG00000045968 ENSRNOT00000048997 3 1 1 60 17 36438538 36438558 GCACCTAAAGATTGTCTACCG 59 36438498 36438518 TTTAGGTGTTGTTCCTTCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brpf1 ENSRNOG00000008142 ENSRNOT00000011246 2 1 1 80 4 145274787 145275123 CCACACTGAAGATGTAGAGGA 59 145275162 145275183 AACTTCAGCTGTTCTTCTACTG 59 NA Rattus norvegicus 81 Dnal4 ENSRNOG00000015583 ENSRNOT00000020941 3 1 1 107 7 120988544 120989651 CAACAATGAGAGTGCTGCA 59 120988455 120988473 TCGTGGGTGATCTCAAACC 60 NA Rattus norvegicus 81 Pde8a ENSRNOG00000019005 ENSRNOT00000025797 3 1 1 80 1 143127088 143128524 ATCATCCAGTATGCAAACCC 58 143128567 143128585 TTGTGCTAACTCCTTCCCT 58 NA Rattus norvegicus 81 Pla2g5 ENSRNOG00000016838 ENSRNOT00000022716 2 1 1 81 5 157248939 157249723 TAGTCATCTGCGAACACGA 59 157248876 157248895 TTTCTCCTCAGGCAGTAGAC 59 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 2 2 2 86 20 32124115 32133340 CAGTTCAAGGTTATCCTGCT 58 32124048 32124066 TCTCCTCAATGCAGTTTGC 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 2 1 1 61 20 3791764 3791784 CCCTTCATTTCCTGTACCTG 58 3791718 3791736 AGGTTTCCATGTTGGAGTC 57 NA DesignNoJunction Rattus norvegicus 81 Klre1 ENSRNOG00000058714 ENSRNOT00000084823 3 1 1 80 4 163352115 163352784 CTAATATTCATCAGGAAGGACTCCA 60 163352820 163352840 TGGAGAAGTAGTAACAGCTGC 60 NA Rattus norvegicus 81 LOC102557244 ENSRNOG00000017519 ENSRNOT00000058040 2 1 1 80 1 79338624 79338644 GCCTACGGATCATAAACAGTC 59 79338683 79349951 ATCTCCAAAGAGGTGAGTACAC 60 NA Rattus norvegicus 81 Timm21 ENSRNOG00000015142 ENSRNOT00000020376 2 1 1 80 18 81803965 81803983 GATCAGTGTCTTTGGCGAG 59 81803820 81803924 TCAGTAAAGCTGACATGTTGTC 59 NA Rattus norvegicus 81 Olr1 ENSRNOG00000056219 ENSRNOT00000086390 1 1 1 80 4 163248523 163251848 AGCTGAGAAATATTCAGAGGAG 58 163248464 163248484 GATTTCTCGTTTAGCTTCCAG 57 NA Rattus norvegicus 81 Olr400 ENSRNOG00000046801 ENSRNOT00000047879 2 1 1 60 3 15895290 15895309 ATGTACCTGACAACTGTGCT 59 15895332 15895350 GAGAGTCCAGCCTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1528 ENSRNOG00000039716 ENSRNOT00000041445 2 1 1 60 11 43144069 43144088 TTGGAAATTTAGCCTTTGCC 57 43144108 43144129 ATAAGCATCTTTGGTGTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mknk2 ENSRNOG00000029028 ENSRNOT00000041106 3 1 1 80 7 11912668 11912769 AGATTTGAAGATGTCTACCAGC 58 11912810 11912828 GAGATTGACACAGGTCTGC 58 NA Rattus norvegicus 81 Pold3 ENSRNOG00000018411 ENSRNOT00000024875 2 1 1 80 1 165107882 165109619 GACTGGAAGCAGTGAAGTC 58 165107820 165107841 TGTCCTTTAGCATAGCTTTCTG 59 NA Rattus norvegicus 81 Keap1 ENSRNOG00000020878 ENSRNOT00000028360 3 1 1 83 8 22254275 22254294 CATAGATGGCCACATCTACG 58 22252726 22254231 TCTCGATCTGGCTCATATCTC 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660,ENSRNOT00000038748 1 2 2 80 3 121979166 121980649 TCAGGAGCCTAAGTTCAGAG 59 121979105 121979123 AACTCACCACCAGAAGGAC 59 NA Rattus norvegicus 81 Zfp566 ENSRNOG00000048138 ENSRNOT00000074582 2 1 1 80 1 88416577 88420427 TTTCAATGGTCCTGGAGTC 57 88416515 88416533 ACTGCGCCATTTCTATCTC 58 NA Rattus norvegicus 81 Olr1653 ENSRNOG00000018489 ENSRNOT00000024937 1 1 1 60 17 2690292 2690310 TGTCACTGTTCCCAAATCC 58 2690334 2690352 CAGGAAGGTGATGGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552474 ENSRNOG00000039615 ENSRNOT00000060737 1 1 1 60 X 14754948 14754968 TATAAGCAAGGAAGACACCAC 58 14754908 14754931 CCATCCCTTCTTCATAAACATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tube1 ENSRNOG00000000598 ENSRNOT00000047194 1 1 1 80 20 44233342 44233360 CATTATCTCGTGTCGAGCC 58 44233402 44235452 AAACATCTGATCCAATCTCCG 58 NA Rattus norvegicus 81 Klri1 ENSRNOG00000052803 ENSRNOT00000090813 1 1 1 80 4 163515728 163524519 AAGACAAGGACCCAAATCAG 58 163515667 163515686 ATGGTTATCATCAGCACCAC 58 NA Rattus norvegicus 81 Gab2 ENSRNOG00000011882 ENSRNOT00000016361 2 1 1 80 1 162276792 162276812 GAGAAACAACACTGTCATCGA 59 162276852 162277442 TTAAAGGTGTGGTTGATCCTG 58 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512,ENSRNOT00000087592 3 3 3 80 9 119105429 119110051 ATCTATTGGGATACAGGTGGAC 59 119110092 119110110 ACGGACTGGAACTTACTGG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172,ENSRNOT00000087673 1 3 3 80 18 62932184 62932204 GATCCGGGAAGATAACAACAC 59 62932244 62938141 CGTAACCACCTGTTATTCCAG 59 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000013241 ENSRNOT00000054729 3 1 1 80 1 258134110 258134129 CAGAAACCACAAGCACTACC 59 258134171 258135322 CTTCCTGGACTTTAGCTGTG 58 NA Rattus norvegicus 81 Arl8a ENSRNOG00000005988 ENSRNOT00000008164 3 1 1 80 13 51980463 51980481 AATCTGTCCGCTATCCAGG 59 51980522 51980949 TAGGGTGATGTCTATGTTGTCC 59 NA Rattus norvegicus 81 Thpo ENSRNOG00000046850 ENSRNOT00000072402 1 1 1 83 11 83872828 83873078 CTAGGAACCCAGCTTCCTC 59 83873125 83873143 AAGCAGTTGTTGCAAGCTC 60 NA Rattus norvegicus 81 LOC289035 ENSRNOG00000027702 ENSRNOT00000033636 3 1 1 184 13 51218518 51218661 CCATTCCAGTTTCTATGGATCC 59 51220575 51220593 ATGATTAGGGATGCCAGGA 58 NA InUTR Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596,ENSRNOT00000055285 3 2 2 80 7 144866735 144866928 GTCAAGAGAAGATTCTCAGAGAC 59 144866965 144866986 TCAGTGTCTTCTTTAATACCGC 59 NA Rattus norvegicus 81 Dpcr1 ENSRNOG00000042287 ENSRNOT00000068159 3 1 1 81 20 3612011 3612031 GCCTCTATCCTATGTTTGGCT 60 3612071 3617934 TCTTGAAATGTGTTAGCACCTG 59 NA Rattus norvegicus 81 Morf4l1 ENSRNOG00000058412 ENSRNOT00000080421 1 1 1 80 8 97482999 97483017 AGCAGAGTGCTCAAATACG 58 97481393 97482956 CTCTGCATATTGTTCCTGGT 58 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 2 2 2 84 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934975 29934995 ACATCGTTATCACCATCACGA 60 NA Rattus norvegicus 81 Spata2L ENSRNOG00000016167 ENSRNOT00000021968 3 1 1 81 19 56034922 56036380 ACCACCATCAAGACCTTCTC 60 56034860 56034878 GGAAGCTTCGAGTCAGGAG 60 NA Rattus norvegicus 81 Mbnl3 ENSRNOG00000002487 ENSRNOT00000043258 1 1 1 80 X 138404769 138435160 TTATGATTCACTAAAGGGTCGG 58 138404710 138404729 TCTAGCTGCGACTTTAAGTG 58 NA Rattus norvegicus 81 Cyb5r1 ENSRNOG00000003973 ENSRNOT00000060669 3 1 1 105 13 51235160 51235178 AAAGGACATAATCCTGCGG 58 51235247 51235582 GTAGGTCCAGTCTTCTGGA 58 NA Rattus norvegicus 81 Erbb4 ENSRNOG00000014248 ENSRNOT00000019283 2 1 1 80 9 75060689 75060709 AAATCACAGACTTTGGACTGG 59 75058587 75060647 TAATTGGCATCTTGCCACC 59 NA Rattus norvegicus 81 Ppm1f ENSRNOG00000037909 ENSRNOT00000002530 1 1 1 80 11 88323207 88323225 CAGGTCATCCTGGTACAGC 60 88318650 88323164 GCGTGATTTCTCATCCTGTC 59 NA Rattus norvegicus 81 LOC100362916 ENSRNOG00000030110 ENSRNOT00000050944 3 1 1 60 15 28051318 28051339 GTTACAGCTATGTTCAGTTCCA 59 28051360 28051378 ATGTCCTCTATGCTGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aspg ENSRNOG00000012843 ENSRNOT00000017454 2 1 1 91 6 136691055 136691073 ATCCACGAACTGTGGAGTG 60 136691128 136691880 AAGAACAGGCAGACCTCAG 59 NA Rattus norvegicus 81 Mir181b2 ENSRNOG00000035563 ENSRNOT00000053686 3 1 1 60 3 23151471 23151489 CATTCATTGCTGTCGGTGG 60 23151511 23151531 CAGTTTGCATTCATTGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf1b ENSRNOG00000016575 ENSRNOT00000022478 3 1 1 80 5 163147438 163148562 CTGTAGTGATGACCAGGTGG 60 163147377 163147395 CAGTAACTGTCAGCGTTGC 60 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000081758 2 1 2 80 7 143967292 143967311 ATTGCCAGTAATCTTCGTGC 59 143960109 143967250 ATAGTGAGCTTCTTCCTGGG 59 NA InUTR Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000081758 3 1 2 81 7 143967292 143967310 TTGCCAGTAATCTTCGTGC 59 143960107 143967248 CCATAGTGAGCTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Rnase6 ENSRNOG00000025597 ENSRNOT00000033739 3 1 1 60 15 28081050 28081068 AACACCCAAAGAAGGACGA 59 28081008 28081029 ACAACCTTATCTAAGTGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rem2 ENSRNOG00000011646 ENSRNOT00000016020 3 1 1 102 15 33123169 33124244 GACATCTGGGAACAGGGAG 60 33124310 33124328 AGCTTCGTCGATCTGTGAC 60 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404,ENSRNOT00000023574 2 2 2 80 1 205013555 205013679 CCATGAGAAGGTATTGAATGAGG 59 205013497 205013515 AACTTCTCCAGGTCTTCCC 59 NA Rattus norvegicus 81 Mir500 ENSRNOG00000036262 ENSRNOT00000054385 2 1 1 61 X 16121348 16121367 TGCTATCTGGGTGCTTAGTG 60 16121391 16121409 ACCTTCTCTGAACCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000004236,ENSRNOT00000085582 2 3 6 80 10 53715896 53716929 CAGTTCATGCTAACTGACCG 59 53717053 53717072 CTTCGTGTTCACAGTCTTCC 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 1 2 6 80 10 53782114 53782135 CTTCTCCATCTCTGATAATGCC 59 53782778 53782890 CCGGATTCTCCAGTAATCAG 58 NA Rattus norvegicus 81 Lrp12 ENSRNOG00000004152 ENSRNOT00000005668 2 1 1 80 7 78865648 78867171 TGAGCGGAGATCATTTGAG 57 78865586 78865604 TGTCCATATGAGGGAGGAG 58 NA Rattus norvegicus 81 Spink8 ENSRNOG00000037199 ENSRNOT00000056180 3 1 1 81 8 117911330 117912775 TGAAAGAGACAAAGGCCCT 59 117912820 117912838 CATATCGGCTCACTGAGCT 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000085887,ENSRNOT00000009904 3 2 3 81 4 162019666 162019684 CGATTGGCTCTGAAACTCG 59 162018981 162019623 ATGTTAGCACTAAGACACCGA 59 NA Rattus norvegicus 81 Surf2 ENSRNOG00000005167 ENSRNOT00000006889 3 1 1 80 3 5467491 5467965 CGTAAACTCAGGAAGAAGGAG 58 5468007 5468025 GGAACTGAAGTTCTTGGGC 59 NA Rattus norvegicus 81 LOC619574 ENSRNOG00000036666 ENSRNOT00000054922 2 1 1 80 10 110427095 110428175 TGATCAAGTGGTGGTCCTG 59 110427033 110427052 TAGCCCTTCCCAAAGTAACG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 3 4 7 84 1 83764531 83765550 TTCCATTGGAAAGCGATTCTG 59 83765595 83765614 GAAGTTCTGCAAGATGGTGG 59 NA Rattus norvegicus 81 RGD1308112 ENSRNOG00000039568 ENSRNOT00000060656 2 1 1 80 13 51370703 51370723 TCCAAATCACTAAACAGCTGG 59 51365972 51370664 TGTCAACCATGTCTTTCTTCTC 59 NA Rattus norvegicus 81 Hemk1 ENSRNOG00000015458 ENSRNOT00000020781 1 1 1 85 8 116083542 116084779 ACCTTGATATAACCTCAGAGGG 59 116083478 116083496 GATGTAGGGAGGGTTGCTC 60 NA Rattus norvegicus 81 Obox5 ENSRNOG00000029702 ENSRNOT00000045660 1 1 1 80 9 101197785 101198244 AGAGAAGGAGATCAAGGTCTG 59 101198286 101198304 GTCTCTGGAAGTGCTTCTG 58 NA Rattus norvegicus 81 Zcchc4 ENSRNOG00000029064 ENSRNOT00000042757 1 1 1 80 14 60527262 60528512 CAAAGCCAAGATGACAGTCAC 60 60527202 60527222 AAACTGACAAATCCGTGACTC 59 NA Rattus norvegicus 81 Zcchc4 ENSRNOG00000029064 ENSRNOT00000042757 2 1 1 80 14 60512462 60516527 GAGAGCTAACAACGCTGTC 59 60512400 60512420 CATGGATTGTCCTTTAGTGCC 59 NA Rattus norvegicus 81 Cyp2c11 ENSRNOG00000052810 ENSRNOT00000088853 2 1 1 80 1 258003073 258003094 CTGGTCACTTTCTAGATGAGAG 58 258003133 258003895 CACATATCCTCTTTCCTGCTG 59 NA Rattus norvegicus 81 AABR07069282.1 ENSRNOG00000012119 ENSRNOT00000016174 2 1 1 82 8 15942026 15942047 AGAGTCTGCTGAAGAACTACAG 60 15942087 15942110 AGATGGGAGATCAAGTTCTGAG 59 NA Rattus norvegicus 81 LOC686074 ENSRNOG00000030364 ENSRNOT00000051911 3 1 1 60 18 24312800 24312818 TCCAAGATACGAGTCGTGC 60 24312758 24312780 GAGTCTGATTAATGACAGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 1 2 2 91 10 35713753 35714015 CATTAAAGAGAAGAAGGAGTGC 57 35713683 35713701 CATCACAAATCACGTTGGG 57 NA Rattus norvegicus 81 Gja3 ENSRNOG00000008847 ENSRNOT00000011699 2 1 1 145 15 37325039 37325057 AGCCTCCTTTACAGAGCAG 59 37301036 37301054 TGACTGTAGAGTGCTCCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 1 2 2 80 3 15052824 15056826 ATCAGCAGGTTGATGTCTG 58 15056869 15056888 CTTCTGTTTGGAGTCTACGG 58 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 3 2 2 80 1 216886018 216886038 TATGCAATGGATCTGACAAGG 58 216885830 216885976 TCTCCTTCTGTGCCTTGAG 59 NA Rattus norvegicus 81 Bola2 ENSRNOG00000015333 ENSRNOT00000020553 3 1 1 63 8 60098389 60098408 CTAAGTTCGAGGGAAAGCCA 60 60098345 60098363 TCTTCAGCTAAGCACTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930,ENSRNOT00000074573 1 2 2 80 7 106751224 106751243 CATGCTTCGAATGGATAGGA 58 106747905 106751182 GTGATGAGTTCTTTGCTGTG 57 NA Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 1 1 1 76 15 33773992 33774732 ATGGAGGCACTTACCAAGG 59 33773934 33773952 GTGGTAGGGTACACTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000003088,ENSRNOT00000082183 3 2 2 81 14 36127349 36135024 CATCTGATTCAGGCCAGTG 58 36135069 36135087 CTTGAAAGATGTCTGGGCT 57 NA Rattus norvegicus 81 Krtap15-1 ENSRNOG00000049399 ENSRNOT00000072546 1 1 1 60 11 28780719 28780738 CCCAAGCAATACTTCTCCAG 58 28780761 28780779 TGCCGTATCCCAAAGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C8g ENSRNOG00000028701 ENSRNOT00000061904 1 1 1 82 3 2725037 2725055 CTGAATGCGTTTGAGGAGC 60 2724904 2724993 TCACAGAAACCATACTTGGGA 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862,ENSRNOT00000087961 2 2 2 80 1 216730802 216730821 GAAATCAGAGCCAGACAAGG 59 216728649 216730762 CAGTCTATTGTACACCCATCAC 59 NA Rattus norvegicus 81 Tsku ENSRNOG00000027784 ENSRNOT00000034843 3 1 1 102 1 163319704 163328459 CTGTGTCACCATGTTGTGC 60 163319620 163319638 CGTCTCTTCCTCACACTGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000017101 3 1 2 80 X 123209902 123209923 GAGTATGATGACCTTTCTGACC 58 123209961 123212607 TGAAGGTAAAGTGAACTGAGAG 58 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 3 1 1 66 1 13166123 13171412 AAATGCCGATGGGAAACTG 59 13166075 13166093 GAGATTGGCACATCTGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 2 1 2 113 3 114918608 114918627 TATGAGGTGCTGGTACTTGG 59 114918703 114920906 GAAATGCCTCTCACTGGGT 60 NA Rattus norvegicus 81 LOC687896 ENSRNOG00000047331 ENSRNOT00000066983 1 1 1 60 10 60849782 60849804 GACCACACTCATATCTTTGTCAC 60 60849823 60849842 ATTAGCACAGAATGAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap13-2 ENSRNOG00000043083 ENSRNOT00000061620 2 1 1 60 11 28739553 28739574 ATGGATCTAGAATCTGCTACCC 59 28739594 28739613 CAATTCATGGATCCGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552705 ENSRNOG00000039459 ENSRNOT00000060470 2 1 1 60 18 30871799 30871819 CTTTCAATCAGAAGTGGTGGT 59 30871836 30871859 GTAAGAATATGGCAAAGTTCCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598,ENSRNOT00000008359 1 2 2 80 6 33823425 33823661 CCAACAGCAGCTCTTTCAG 59 33823705 33823723 GCTAATGCATACTGCTGCT 58 NA Rattus norvegicus 81 Itga10 ENSRNOG00000021217 ENSRNOT00000028812 3 1 1 80 2 198784625 198784646 GGTATGAGGTTCATCCTTACAG 58 198784685 198784837 CAAGGTTCTGAACCCTAAGAG 58 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000048191 ENSRNOT00000057271 1 1 1 84 6 127932214 127932234 ATTAGGGAAGTCTTCTCCCAG 59 127932279 127933200 CCTTGTGGACTACCTGAGAG 59 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678,ENSRNOT00000047854 3 2 2 80 5 173597967 173598067 ACTTTGACCCTACCACAGC 60 173597905 173597923 CCCATGGCCTAGATACCTG 59 NA Rattus norvegicus 81 Olr1638 ENSRNOG00000011615 ENSRNOT00000015439 3 1 1 60 15 28445891 28445912 TTGAGAAACAAGGATGTGAAGG 59 28445852 28445870 ATCGCATTGATTTCCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 2 2 2 80 10 47985106 47985125 CCGTGATATACACAGATGCC 58 47983788 47985065 TCTGGTTGAAAGCTTTGACTG 59 NA Rattus norvegicus 81 Olr300 ENSRNOG00000033032 ENSRNOT00000050237 3 1 1 60 1 213040159 213040177 ATCACAGTCATTCACAGCA 57 213040196 213040219 GATTGACTAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr302 ENSRNOG00000045957 ENSRNOT00000051727 3 1 1 60 1 213071283 213071301 TTCATCTGTGTTCTGTGCC 58 213071325 213071343 CTTGCTTCTTTCTGGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 2 2 2 80 8 48475091 48475199 GCAAGTCTACAAGGCTCCA 60 48475240 48475261 TCCTTAAGCTCTTGTATGTCCA 59 NA Rattus norvegicus 81 Acp6 ENSRNOG00000017494 ENSRNOT00000043194 2 1 1 80 2 199303468 199303487 CCCATTCCTCTACATCCTGG 59 199303528 199304864 TACATCTTCCTGGTCTTGCTG 60 NA Rattus norvegicus 81 Rnf11l1 ENSRNOG00000057589 ENSRNOT00000080048 3 1 1 83 5 129095006 129112783 GCCATATCAGGAACAAGTTCC 59 129094943 129094961 TCCTCTTCAGTCAGCTGAG 58 NA Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000077143 1 1 2 80 20 4067037 4067056 CATTCCTTCCACAAGATGGC 59 4066687 4066995 CTGGAATCTCAGGTTCTTGC 59 NA Rattus norvegicus 81 Atxn10 ENSRNOG00000014637 ENSRNOT00000021071 3 1 1 80 7 126283918 126283938 GTTTAAGTCTCACCTCATCCG 59 126283979 126327318 TCCAGCTCATTCACTTTGTC 58 NA Rattus norvegicus 81 Olr1006 ENSRNOG00000032428 ENSRNOT00000051694 1 1 1 60 7 6097472 6097491 TGCCAAAGAAGAGGTAACCA 59 6097509 6097532 GGGTGATATGGAAGAAATAAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1006 ENSRNOG00000032428 ENSRNOT00000051694 2 1 1 60 7 6096855 6096873 CCCACGTATTTCTTCCTCC 58 6096896 6096915 CACAGGCACTTGTAAATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec22b ENSRNOG00000018673 ENSRNOT00000025327 3 1 1 80 2 200089997 200090016 AATTGCAAGATGTGCAGAGG 59 200090058 200096058 AATCCAATGCTGAGAGTGCT 60 NA Rattus norvegicus 81 Olr1079 ENSRNOG00000049781 ENSRNOT00000073334 1 1 1 60 7 13488426 13488445 AGTTCAAGGGAAGTACAAGG 57 13488385 13488405 TAAGGAGACAATGGAAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 2 2 2 80 13 26988200 26988218 AAGCAAAGCATCTGACAGC 59 26988260 26988585 TCATTTGTAGATTCACCCTGC 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000026719,ENSRNOT00000087595,ENSRNOT00000081301,ENSRNOT00000026707 1 5 5 80 9 97961545 97962156 TGTTTCCAAAGCCTGTAATCTG 59 97961486 97961505 CCCTTCTGACTCACAAACAC 59 NA Rattus norvegicus 81 Lsm3 ENSRNOG00000008733 ENSRNOT00000011557 2 1 1 80 4 123162987 123165407 GGCAGATTACATGCTTACGA 58 123165448 123165468 ATCAATCTCTATCGTCGTCAC 58 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000025381,ENSRNOT00000091370 3 2 2 80 17 5569765 5569784 TATCGAGAGGCTGATACACC 59 5569825 5571073 TCTGGAGTGGTATAGTTAGGG 58 NA Rattus norvegicus 81 AABR07054716.1 ENSRNOG00000047454 ENSRNOT00000072202 1 1 1 86 3 167513809 167513828 GGCATTGCTGAATCCTTCTC 59 167513993 167514383 CAAATGTAGCCTATAGCGCTG 59 NA Rattus norvegicus 81 Llgl1 ENSRNOG00000003948 ENSRNOT00000005366 3 1 1 86 10 46947673 46947691 CACTGTAGTGACCACACCT 59 46947915 46948087 AAGTGGTCTCCTGACTCAC 59 NA Rattus norvegicus 81 Olr1393 ENSRNOG00000047749 ENSRNOT00000049754 2 1 1 60 10 34662710 34662729 CTTCTTCTGTGAGATGCCCA 60 34662752 34662770 TTCTGTTCCTCCTGTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1382 ENSRNOG00000050905 ENSRNOT00000060972 3 1 1 60 10 12817797 12817815 TGGACCTGGACAATTTCCT 59 12817755 12817773 TGACATATGGCCACATACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc5 ENSRNOG00000030238 ENSRNOT00000047152 3 1 1 95 5 147325924 147326253 CTAAGAACAAAGATGAGGTGACC 59 147326308 147326326 ACATGAAGAGGACCACGAC 59 NA Rattus norvegicus 81 Zfp251 ENSRNOG00000030308 ENSRNOT00000028184 2 1 1 111 7 117938520 117938539 CTAAGCCAGAGCTGATCTCC 60 117912920 117938446 ATCTCAGAATCTGTCCCGC 59 NA Rattus norvegicus 81 Apoa5 ENSRNOG00000018436 ENSRNOT00000024918 2 1 1 85 8 50559265 50559284 CTCGCTACTTTGTGACAGAG 58 50559522 50559627 TTGCAAACACTGAGAGGAG 58 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000091089 1 1 2 80 13 91081279 91081299 GGGCACTGAAGTATGAAACAC 60 91081339 91092353 CTTGGACTTGAGAACAGTCAG 59 NA Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952,ENSRNOT00000079412 1 2 2 60 16 24780875 24780894 CGACTACGAGACTATAGCCA 58 24780834 24780854 CTTCAAAGAAGTCTTGGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 1 2 2 80 17 9779649 9779670 AGTGGATTTGGAGAATCTAGTG 58 9779482 9779608 TCCCTTGTCTTTGCATCTG 58 NA Rattus norvegicus 81 Taar7h ENSRNOG00000048072 ENSRNOT00000043436 3 1 1 60 1 22451703 22451722 GATCTAGTGAGTGCCCTCAG 59 22451662 22451682 CACAGCTTTGATTCATTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tap2 ENSRNOG00000000455 ENSRNOT00000000527 1 1 1 82 20 3996989 3998847 ATTCTCTGTTGGGAGCTCC 59 3998892 3998911 GTATGCGAAGGTTGATCCTG 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 3 3 3 85 7 40309705 40310566 ACATTCCTGGTTGGGTACC 59 40309638 40309658 GGCAATTCCAAACTCATAGCT 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 1 3 5 90 8 39379835 39379853 TACCATGGTAACCTCCCAG 58 39378996 39379782 GAGGTCAAGGTTAACCTGTG 58 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076025,ENSRNOT00000091894 1 2 5 209 8 39437198 39437216 CTCTGACAATGATGGCCAC 59 39404784 39422108 AAAGAGGGTGCCTGTACAC 60 NA DesignRelaxed Rattus norvegicus 81 Fam132b ENSRNOG00000024688 ENSRNOT00000051810 1 1 1 94 9 98510132 98511070 CCTCTATCTACAGACAGGACAC 59 98511125 98511143 TAGCACTGAAGTGAGAGCC 59 NA Rattus norvegicus 81 Olr905 ENSRNOG00000048201 ENSRNOT00000040030 1 1 1 60 7 5451117 5451136 ATCATCACTCTCACCTTGCT 59 5451076 5451099 TCTGGAGGAAGAAATACATAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801,ENSRNOT00000080379 3 2 2 80 3 123059362 123061918 ACATCCTGCCTTATGACCA 58 123061960 123061980 ATGAGGCGTTGATGTAATCAG 59 NA Rattus norvegicus 81 AABR07058267.1 ENSRNOG00000005486 ENSRNOT00000007587 1 1 1 80 7 107413914 107414165 CTTCAGTACCAGAAGTGCCT 60 107414203 107414226 CACAACTTAAATCAAGAGGGAGAC 60 NA Rattus norvegicus 81 AABR07034721.1 ENSRNOG00000049950 ENSRNOT00000046865 1 1 1 100 11 85189736 85189755 CTCAACTCCATAGTGCACAC 59 85189823 85189841 AACTTCAACATGGCAGGGA 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0749.4 ENSRNOG00000051178 ENSRNOT00000076567 2 1 1 80 X 74018357 74018375 GCATTGCATGTTATGGTGC 58 74018414 74018628 GCCACCATAATATTCTAGAAGAGG 59 NA Rattus norvegicus 81 Rn60_X_0749.4 ENSRNOG00000051178 ENSRNOT00000076567 3 1 1 80 X 74018359 74018377 ATTGCATGTTATGGTGCCA 58 74018415 74018630 CTGCCACCATAATATTCTAGAAGAG 59 NA Rattus norvegicus 81 Tssk3 ENSRNOG00000008693 ENSRNOT00000011887 3 1 1 97 5 147690995 147691662 GCCAGAAGAGTTTATCCAGAG 58 147690918 147690937 ATTCCAGCATCTCATACACC 58 NA Rattus norvegicus 81 Timp1 ENSRNOG00000010208 ENSRNOT00000013745 3 1 1 80 X 1368536 1368555 CTTCCAGTAAAGCCTGTAGC 58 1366686 1368496 ATTTAGCCCTTATAACCAGGTC 58 NA Rattus norvegicus 81 Foxr2 ENSRNOG00000030619 ENSRNOT00000043382 3 1 1 60 X 19145189 19145209 TGATAATGATGGTCCTCCCAC 59 19145149 19145170 CACAATGTTAGGATTCACCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 3 2 2 80 16 24981004 24982624 GAAGGAAAGATTGAAGACGGAG 59 24983634 24983653 TCCAGATGACTGTGAAACCA 59 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 2 2 2 83 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861227 58861246 AATTTCTTCAGCTCGTGGAG 58 NA Rattus norvegicus 81 Actr3b ENSRNOG00000031855 ENSRNOT00000041876 2 1 1 81 4 5651895 5652606 TCTTTCACCCTGAGTTTGC 58 5652650 5652669 ATGGGACAGTTCTGTATGAC 57 NA Rattus norvegicus 81 Gpx7 ENSRNOG00000009751 ENSRNOT00000013913 1 1 1 92 5 128004815 128004834 ACCTACAGTGTCTCTTTCCC 59 128002335 128004761 CCCAGAAGTTTGGGTTAGGT 60 NA Rattus norvegicus 81 LOC100364433 ENSRNOG00000047993 ENSRNOT00000074329 3 1 1 60 7 6626190 6626214 GATCTTCATCTTTCTCTTCATCACC 60 6626154 6626172 GATGATGGTCACGTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ammecr1l ENSRNOG00000016250 ENSRNOT00000061074 3 1 1 80 18 24558705 24560404 ACTCACAAGGTATCGAAGTG 57 24560447 24560465 CCATTCTGGAAACAGTGCT 58 NA Rattus norvegicus 81 AABR07054968.1 ENSRNOG00000059891 ENSRNOT00000086626 1 1 1 95 3 175925149 175925168 GTTCAGCCAGAATATTGGGC 59 175925226 175926088 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 AABR07054968.1 ENSRNOG00000059891 ENSRNOT00000086626 3 1 1 98 3 175925146 175925167 CAAGTTCAGCCAGAATATTGGG 60 175925226 175926088 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 Zfp296 ENSRNOG00000049605 ENSRNOT00000074579 2 1 1 84 1 80488180 80488389 TTCTATGTCTTCCGACCGC 60 80488436 80488455 TAATGGGAAGATCTTCCCGC 60 NA Rattus norvegicus 81 Pcdhb12 ENSRNOG00000033719 ENSRNOT00000043846 1 1 1 60 18 30510327 30510345 CACGGATTTAGATGCTGGG 58 30510368 30510387 CCCATACCCTTGAAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000065748 1 2 3 80 11 11104020 11104042 CTCAGTTCAACAGAAATCAGACC 60 11098145 11103980 CCTTTCCCACCATTGTTCC 59 NA Rattus norvegicus 81 Evi2a ENSRNOG00000022764 ENSRNOT00000039261 3 1 1 81 10 66871293 66873844 TCTGTAAGATACCAGTGTACCT 58 66871233 66871251 CCACACTGTTGTCATCAGG 59 NA InUTR Rattus norvegicus 81 Pcdhga10 ENSRNOG00000027253 ENSRNOT00000026985 3 1 1 60 18 30897332 30897353 ACATATCCATCAACTCAGACAC 58 30897372 30897392 TGCTCATAGTCAAAGGACCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307621 ENSRNOG00000023230 ENSRNOT00000034756 3 1 1 80 6 86656879 86658241 GAAATCTGAAGGTCTCGCA 58 86658945 86658964 AATAAAGTGGCACCTTCCAG 58 NA Rattus norvegicus 81 AABR07030977.1 ENSRNOG00000046767 ENSRNOT00000034630 1 1 1 80 10 111389260 111389279 ATCAGAAACAAACAGCCGAC 59 111389319 111390501 GCTCCATATCTGTATCATTGGC 59 NA Rattus norvegicus 81 Olr1610 ENSRNOG00000047419 ENSRNOT00000016721 3 1 1 60 15 27076615 27076634 ACTTCTTCTGTGATGTCCCA 59 27076574 27076592 TCAACTGCAAAGGTGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362926 ENSRNOG00000047155 ENSRNOT00000072301 1 1 1 60 7 3874492 3874511 CAGACACTTGGTTCATGGAG 59 3874451 3874475 GTTATAATGAGAGTCAGTACAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.1 ENSRNOG00000050859 ENSRNOT00000072338 3 1 1 107 6 140571888 140571990 ACATTTCCAAGCTGTGCTC 59 140571799 140571817 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Sh3bp1 ENSRNOG00000009360 ENSRNOT00000012480 1 1 1 80 7 120133772 120133790 CTGTGTCCTCCATTCAGGT 59 120133830 120134149 AGTTGATATCTCCAGGAAAGAGG 60 NA Rattus norvegicus 81 Ccdc136 ENSRNOG00000007100 ENSRNOT00000060309 1 1 1 80 4 56694874 56694893 CCCTTCACAAGAGTTATGCC 59 56694935 56695314 CTGTTTCCTCAAAGTGCTCC 59 NA Rattus norvegicus 81 Mbd4 ENSRNOG00000010919 ENSRNOT00000014537 2 1 1 80 4 147748859 147748958 TACAACAAAGAAGCTCTTAGCC 59 147748800 147748820 AACAAGATTGAAAGGTGACCG 59 NA Rattus norvegicus 81 Klhl9 ENSRNOG00000006335 ENSRNOT00000008510 3 1 1 60 5 107324483 107324503 TGAGAACTGACAATACCTGTG 58 107324524 107324543 GGCATCATTTGGTAATTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 2 1 1 80 18 15918302 15918320 ACCGAGTTCTGAGCTTGAC 60 15915133 15918258 TCATCACAGTGCCTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07049401.1 ENSRNOG00000037977 ENSRNOT00000057774 1 1 1 80 5 120740728 120740748 CTTAGACATCTCCAGCATCTC 58 120739804 120740686 CTTCAGGCATCTGAAGAGC 58 NA Rattus norvegicus 81 Tceanc ENSRNOG00000004531 ENSRNOT00000005981 3 1 1 60 X 29504789 29504808 AAGTAGTGCTGCTCAAATGG 59 29504830 29504849 CGGAGATTCAGAGTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfyve9 ENSRNOG00000027183 ENSRNOT00000037523 3 1 1 80 5 128286652 128289816 ATGAATCTTCTAGCAGACTTCC 58 128286593 128286612 CCGAACTTCCATATCAACCA 58 NA Rattus norvegicus 81 Ust ENSRNOG00000016381 ENSRNOT00000022003 1 1 1 80 1 2375367 2375385 TGTGCTGCTTCTACTGGAG 59 2334221 2375323 TTCCTATGCTCTGGGTCCT 60 NA Rattus norvegicus 81 LOC100911449 ENSRNOG00000048133 ENSRNOT00000060987 1 1 1 60 10 12100988 12101010 AACCCTTTCATCTATAGCCTGAG 60 12101029 12101048 CGAGCACTTTCCTTAAAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb10 ENSRNOG00000017993 ENSRNOT00000024232 2 1 1 80 19 56760155 56760173 CTCCGTGACCGAGAATCTC 60 56758474 56760113 GACACAAAGAACATCATGCCA 60 NA Rattus norvegicus 81 Tlr7 ENSRNOG00000004249 ENSRNOT00000005620 1 1 1 133 X 28486977 28487333 TCAAGAAAGATGCCATTGGA 58 28508898 28508917 TCTTCAATGTCCACATTGGA 57 NA InUTR Rattus norvegicus 81 Rn60_10_0698.9 ENSRNOG00000051182 ENSRNOT00000076370 3 1 1 60 10 70075567 70075585 ATTGGTGAAGTCCTAGGCA 58 70075608 70075627 AGGACCACATAAGCAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1559 ENSRNOG00000050423 ENSRNOT00000070849 2 1 1 60 11 43699065 43699083 GGATTCTCAGATCACCCAG 57 43699104 43699125 GATAGATGACAGAGAACACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msx2 ENSRNOG00000018355 ENSRNOT00000024766 3 1 1 268 17 11684015 11684033 CTCATGTCCGACAAGAAGC 59 11687955 11687973 GTCTTGTGTTTCCTCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Mlx ENSRNOG00000019983 ENSRNOT00000027116 2 1 1 90 10 88998351 88998369 GTAGAAAGCACCCACAAGG 59 88998423 88998701 CCTCATCATCTGTGTTGGG 58 NA Rattus norvegicus 81 Catsper4 ENSRNOG00000016312 ENSRNOT00000021919 3 1 1 80 5 152436969 152436988 GGGTGGCTCTGTATACACTC 60 152433855 152436926 TTTCCTCCACCTGGAAGTC 59 NA Rattus norvegicus 81 Fgd5 ENSRNOG00000010213 ENSRNOT00000051022 2 1 1 80 4 123948461 123948480 TCCTGAAGGAAGGAACACTG 59 123948523 123950807 GGAGCGTGTCATTCATCAG 59 NA Rattus norvegicus 81 Lyz2 ENSRNOG00000005825 ENSRNOT00000007747 1 1 1 60 7 60341116 60341135 GGGATGTCTGGCTACTATGG 60 60339547 60339566 TCTCATGCTGAGCTAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Itpkc ENSRNOG00000013945 ENSRNOT00000018696 2 1 1 80 1 84024718 84025282 CGTTGGAATCCTAAGAAAGTACG 60 84024660 84024678 TGGGTCTTGAAGAAGGGAG 59 NA Rattus norvegicus 81 Cyp4a8 ENSRNOG00000008842 ENSRNOT00000012448 2 1 1 80 5 133982986 133983005 ACCCTTATCGATTTGCACCA 60 133980047 133982943 CAATGCAGTTCCTTGCTCC 60 NA Rattus norvegicus 81 Olr1286 ENSRNOG00000055935 ENSRNOT00000086118 1 1 1 60 15 35762131 35762150 TGCTGTCTTCTTTGGTTCTG 59 35762171 35762191 CATTGAACTCACTGATGATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1553 ENSRNOG00000046886 ENSRNOT00000060877 1 1 1 60 11 43561648 43561667 TTATCATCCACAGTGACACC 57 43561607 43561625 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef39 ENSRNOG00000021433 ENSRNOT00000031336 1 1 1 80 5 58999026 58999255 GTGGTTTGCTCAGTCTGTC 59 58998964 58998982 GGTACCATTGTGACAGCTC 58 NA Rattus norvegicus 81 LOC100911764 ENSRNOG00000049279 ENSRNOT00000071721 1 1 1 81 1 99353878 99353896 TAATGAACCGCAATGTGGG 59 99353936 99354911 CTGGTAATTGACACTATAGCAGTG 59 NA Rattus norvegicus 81 LOC100911764 ENSRNOG00000049279 ENSRNOT00000071721 3 1 1 82 1 99353878 99353896 TAATGAACCGCAATGTGGG 59 99353939 99354912 CCTGGTAATTGACACTATAGCA 58 NA Rattus norvegicus 81 Ubqln1 ENSRNOG00000019282 ENSRNOT00000061233 3 1 1 80 17 6860354 6862848 CTTTGGTTTAGGTGGACTTGG 59 6862887 6862908 CTCTGTAGTTCAGAGAAGTTGG 58 NA Rattus norvegicus 81 Afg3l1 ENSRNOG00000026994 ENSRNOT00000030399 3 1 1 80 19 56298524 56298542 TTGGTCAGATCACCACAGG 59 56298586 56298681 TTCCGAACTGCACAATCTG 59 NA Rattus norvegicus 81 Jun ENSRNOG00000026293 ENSRNOT00000011731 2 1 1 62 5 114012481 114012499 GGTGGCACAGCTTAAACAG 60 114012437 114012455 GTTAGCATGAGTTGGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phkg1 ENSRNOG00000000920 ENSRNOT00000001222 2 1 1 81 12 30462523 30462542 TCATGGATGGCAAATACCAG 58 30462585 30463523 AAGAAGCGAGATACCAAGTC 58 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511,ENSRNOT00000056172,ENSRNOT00000086835 2 3 3 80 2 200762109 200762127 AAGAACTGCAGGAGGTCAG 59 200760400 200762066 CCTTTGTCTGCAGCTTAGAG 59 NA Rattus norvegicus 81 Proc ENSRNOG00000014376 ENSRNOT00000019596 1 1 1 106 18 24920749 24920767 AAGAAGCTAGCCTGTGGAG 59 24919082 24920680 TCATACTCACCAAGCCTCAC 60 NA Rattus norvegicus 81 Fam184b ENSRNOG00000003704 ENSRNOT00000004923 2 1 1 80 14 70020254 70020272 TGAAGAAGCACACCATGGA 59 70020314 70027977 GAGCTTCAACTTCTTTCAGCT 59 NA Rattus norvegicus 81 Ly49i3 ENSRNOG00000046046 ENSRNOT00000050861 1 1 1 80 4 162646957 162646977 AACAGAGAACAGAAGAGATGG 58 162644483 162646916 CATTTCAACACAACCACCTG 58 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 2 1 1 83 3 122930698 122930716 TCTTCTCCACACTGCTGAG 59 122930761 122930782 CCTTCTATTGGTCCAAGTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Mrpl18 ENSRNOG00000014582 ENSRNOT00000020064 1 1 1 85 1 48034293 48034311 GAGCTCTTAGGTGTAGCCC 59 48034358 48036257 TTTACAACTCTCAACCTGTGC 59 NA Rattus norvegicus 81 AABR07049728.1 ENSRNOG00000033231 ENSRNOT00000044921 3 1 1 85 5 134444683 134444701 CCACCAATGTCAGATCTGC 59 134444750 134444967 TTCTTTCTTTCGGGTGGTG 58 NA Rattus norvegicus 81 Ephb3 ENSRNOG00000031801 ENSRNOT00000044896 3 1 1 80 11 83528843 83528973 GATGACTGCAGAAGATCTGC 59 83528782 83528801 ATGTCCTGGATACTGCTGAG 59 NA Rattus norvegicus 81 Ect2 ENSRNOG00000024365 ENSRNOT00000018055 3 1 1 80 2 112815755 112815774 AGAGCATTCCCTTTCTATCG 57 112814250 112815713 TTCGGTGTTTCTCCATAGTG 58 NA Rattus norvegicus 81 Pi4k2b ENSRNOG00000003924 ENSRNOT00000005349 3 1 1 80 14 60582096 60583676 CTTCCTCCTAAGATTGGTTCC 58 60582036 60582054 GGCTTCAAACCTCCTAAGC 59 NA Rattus norvegicus 81 Ncf4 ENSRNOG00000006940 ENSRNOT00000009544 3 1 1 80 7 119490643 119492314 CTCAATGCCTACATGAAGAACC 60 119492349 119492373 CTGATAGAAGAATATTCTGACGTCG 59 NA Rattus norvegicus 81 Mmp17 ENSRNOG00000023643 ENSRNOT00000035881 3 1 1 80 12 30717888 30718235 GAACCTTTCTTGGAGGGTC 58 30717826 30717844 GCGTAGTACATGAGTGCAC 59 NA Rattus norvegicus 81 Elane ENSRNOG00000033685 ENSRNOT00000014981 2 1 1 80 7 12639508 12639639 TGAATGGCCGAAATTTCCAG 59 12639447 12639465 AGATTTGTCGAGTGGGCTC 60 NA Rattus norvegicus 81 Raf1 ENSRNOG00000010153 ENSRNOT00000013831 3 1 1 80 4 147549635 147549655 GAAAGCTCTGAAGGTTAGAGG 58 147547182 147549594 GCTTTCTTACCTTTGTGCTC 57 NA Rattus norvegicus 81 Cul7 ENSRNOG00000017857 ENSRNOT00000024266 2 1 1 80 9 16639558 16639577 AAGTTAAACGCAGAGGAACG 59 16639244 16639517 CTCAAAGTCCAGAACATGCTC 59 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000050076 1 1 2 80 1 264537936 264537955 GGATCCTACTCCATCAACGG 60 264537996 264543489 GTATACCTCGACTTCCTCTCG 59 NA Rattus norvegicus 81 Tst ENSRNOG00000000186 ENSRNOT00000050511 3 1 1 82 7 119616781 119622455 ATGCAGTAGGACTGGACTC 59 119616717 119616735 CTCGAAGCCATCTTCTGTC 58 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 2 3 3 81 4 162086211 162086799 AGGAGGAGCTGAATTTCCT 58 162086844 162086862 GGGTCTGCTGATGATTCTC 58 NA Rattus norvegicus 81 Ppp1r21 ENSRNOG00000016528 ENSRNOT00000061675 3 1 1 80 6 12293643 12293662 AGCTGGTAACGACTAACGAC 60 12293702 12296794 TGAAGAAAGATGCAATCTTCCC 59 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000085222 3 1 2 141 10 104953150 104953169 TTCACAGTGACCTTGGAGAG 59 104953273 104978642 TTGAACCTGTGACTGGGAC 60 NA Rattus norvegicus 81 Taf1b ENSRNOG00000061415 ENSRNOT00000086798 1 1 1 80 6 43674384 43674402 TTGCCCTCTGCTATCTGTC 59 43674445 43682185 GGTCCTCTTCAACAAACCTC 59 NA Rattus norvegicus 81 Cdhr2 ENSRNOG00000017917 ENSRNOT00000024151 2 1 1 80 17 10419861 10420952 CTCTGAATCTCTTCACTGTGG 58 10419801 10419819 TATTGGCACCAACATCCTC 58 NA Rattus norvegicus 81 dsr-2 ENSRNOG00000060470 ENSRNOT00000080308 2 1 1 62 6 112526798 112526816 TTGTGCTTGCACATGAGTG 59 112526754 112526772 TCCTCTGGCCCTATTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079640,ENSRNOT00000091697,ENSRNOT00000079108 2 5 5 80 3 8594113 8594486 TTCCGAAAGGTAGAAGACCTC 59 8594526 8594546 CTCTTCTGCATTCTCAAACCA 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888,ENSRNOT00000057095,ENSRNOT00000051385 1 3 3 80 5 134498861 134498882 TCTCCTTAATGACCCTAGACAC 59 134498920 134499368 TCTTGTAATTTCCATCCACCTG 59 NA Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000082774 2 1 2 81 8 133210536 133213190 AGAAACTCTGGCTCTTGCA 59 133213229 133213253 GTGCTGACATACTATAATCGATGTC 60 NA InUTR Rattus norvegicus 81 Tysnd1 ENSRNOG00000024839 ENSRNOT00000036719 3 1 1 89 20 31317026 31317044 TGATGCTACAGACCACCTG 59 31317097 31317976 CAACAATGCCCAAGAGGTC 59 NA Rattus norvegicus 81 Tma7 ENSRNOG00000047225 ENSRNOT00000075819 1 1 1 103 8 117820068 117820088 GAAGATAAGGCTTTCAAGCAG 57 117816009 117820004 TTAATTCCACCTGTAGCCAG 57 NA Rattus norvegicus 81 Tma7 ENSRNOG00000047225 ENSRNOT00000075819 3 1 1 121 8 117820078 117820178 TGGACGAGGAAGATAAGGC 59 117815999 117816020 GCCAGATTTCTTAATTCCACCT 59 NA Rattus norvegicus 81 Dpp6 ENSRNOG00000030547 ENSRNOT00000045773 1 1 1 80 4 4149987 4150005 ATTCGAGTGGTCTCTACGG 59 4125574 4149948 CTTCAGAATCTCCTCTTCATACAG 59 NA Rattus norvegicus 81 Ccdc54 ENSRNOG00000028005 ENSRNOT00000035340 2 1 1 60 11 52828560 52828578 TACTCCAGCGTACACTGTC 59 52828601 52828620 GCTGTGCAATTTCTTTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 2 2 2 80 7 117059484 117059502 CGACTCTTGGCATTTGCTC 60 117059546 117059641 GCAATGGAATCTCTGCACG 60 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000042425 1 1 2 80 1 86618080 86618100 GAACATCATGGACAACGTCTG 60 86613182 86618043 CATAAGGTCCAATAGAAAGCTGTG 60 NA Rattus norvegicus 81 Shfm1 ENSRNOG00000010420 ENSRNOT00000013841 1 1 1 80 4 32067893 32069842 CAATCAGTTACGCGCTGAG 59 32067831 32067852 TTAAGTTCCTGGAACATTCCTG 58 NA InUTR Rattus norvegicus 81 Clec2g ENSRNOG00000059538 ENSRNOT00000090939 1 1 1 80 4 162941053 162941071 CATTCAGCCAGACCTTCTG 58 162941112 162941697 TGCTTAAGAAATTCAGCTCCTC 59 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 3 2 2 99 9 16610695 16611161 CATGGACCCAGAACATGTG 59 16610614 16610633 AGCATCTGATATCTCCCGAG 59 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139,ENSRNOT00000007119 2 2 2 115 4 166211718 166211736 GAGCTATGCTCAGGAACCA 59 166213872 166213890 CTTGTTGGTTTCCAGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Snx12 ENSRNOG00000004036 ENSRNOT00000068098 1 1 1 80 X 71120005 71120977 AGATAGTAAGATCGTAGTACCACC 59 71119948 71119967 AAGATCCCTTCATCTCCTCG 59 NA Rattus norvegicus 81 Hus1b ENSRNOG00000052502 ENSRNOT00000084871 1 1 1 60 17 34694059 34694077 CGTGAGTGTTTATCTGCCT 58 34694101 34694119 ATTTGCCATCCTTTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_17_0381.1 ENSRNOG00000052667 ENSRNOT00000086839 1 1 1 60 17 36713335 36713355 GGACCTTCATTAACCAGATCC 58 36713295 36713313 TCAGTCACCACTAGAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560883 ENSRNOG00000045639 ENSRNOT00000071535 3 1 1 80 2 4412029 4412050 TGGAAATGTATTTACGAGCCAC 59 4412091 4424720 TCTGTGAATGCCGAGACTG 60 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 2 2 4 83 10 23664288 23664969 ACAGCAATGGGATAAGGAC 57 23675996 23676014 GGCCTTCATACACTATGGC 58 NA Rattus norvegicus 81 Krtap27-1 ENSRNOG00000049035 ENSRNOT00000071257 3 1 1 60 11 28630046 28630064 GCTTCATAGCTACTGCCAC 58 28630004 28630023 GATGGAAGACAGTGATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065217.2 ENSRNOG00000042542 ENSRNOT00000039910 2 1 1 60 6 115769437 115769458 AAAGTTCGTTTCCTGGTATGAC 59 115769398 115769416 CATGAGGTCTACCACCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agbl3 ENSRNOG00000010397 ENSRNOT00000032077 1 1 1 80 4 62357117 62357135 GGCATCCTTGAAATGTCCT 58 62357178 62364841 TGGTGATTTGACTCTGTTGG 58 NA Rattus norvegicus 81 Krtap19-5 ENSRNOG00000040068 ENSRNOT00000061610 2 1 1 60 11 28842132 28842150 ATACGGATATGGCTACCGC 59 28842090 28842108 GTAGAAGCGGGAGAATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cutc ENSRNOG00000017298 ENSRNOT00000023396 1 1 1 80 1 263520924 263520943 AGGACTGCCTCTCATAAAGC 60 263522555 263524902 TTAACTGTTATCCCACCTCCTG 60 NA Rattus norvegicus 81 Cutc ENSRNOG00000017298 ENSRNOT00000023396 2 1 1 80 1 263517559 263517578 ACATTGACCAAGAGCTATGC 58 263518281 263520853 CTGCCATTGGATCTCTGTG 58 NA Rattus norvegicus 81 Olr1063 ENSRNOG00000046346 ENSRNOT00000047647 3 1 1 60 7 9263845 9263866 CACTCTTAGAAACAAGCAAGTG 58 9263886 9263905 ACTTATAGCCTTCCTCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC091336.1 ENSRNOG00000011234 ENSRNOT00000014930 1 1 1 60 1 60106259 60106278 CGACTGAGGAACTTTCTCAC 58 60106300 60106319 GGAGAGGCATAACTTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl31 ENSRNOG00000006224 ENSRNOT00000008244 1 1 1 80 8 84945486 84959654 GATCCTAGGTGAGCTGTGG 59 84959695 84959716 GGGTTTGTTCTTCTTGAGAGTC 59 NA InUTR Rattus norvegicus 81 AABR07011700.1 ENSRNOG00000057979 ENSRNOT00000071111 2 1 1 60 2 166475565 166475583 ACACATGGAAACAACCCTG 58 166475604 166475625 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pld3 ENSRNOG00000018390 ENSRNOT00000057177 1 1 1 80 1 84339941 84340784 TCCAGGTGAAACTGTTTGTG 59 84339880 84339899 TGTACTTGTTGTGGTTGACG 59 NA Rattus norvegicus 81 Itpripl1 ENSRNOG00000012151 ENSRNOT00000016172 1 1 1 143 3 119618622 119619686 AACTGAGACCATGCAGAGG 59 119618497 119618515 CATTCGTTTCTCCAGCTGC 60 NA InUTR Rattus norvegicus 81 Vamp3 ENSRNOG00000030055 ENSRNOT00000051554 1 1 1 80 5 168129530 168134545 TCAAGTAGATGAGGTGGTGG 59 168129469 168129488 TCTAGCTCTGAGAGCTTCTG 58 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 1 2 2 80 1 57726557 57727339 GCCTTACAACACTTAATCCGT 59 57727378 57727399 ATTGCCTCTTTCTCTTAGACGA 59 NA Rattus norvegicus 81 Cdc73 ENSRNOG00000003258 ENSRNOT00000004495 2 1 1 80 13 60421599 60421619 TATTATTCCTGCAGCTACCAC 58 60412366 60421560 GATGGGACAAATTTCAGATCCT 59 NA Rattus norvegicus 81 Uchl1 ENSRNOG00000002343 ENSRNOT00000003248 3 1 1 81 14 43137886 43140371 AAGCTGGAATTTGAGGATGGA 60 43137825 43137843 ACTTGGCTCTGTCTTCAGG 59 NA Rattus norvegicus 81 LOC102550816 ENSRNOG00000040058 ENSRNOT00000061599 2 1 1 60 11 29008363 29008381 TATGGCTATGGCTGTTGTC 57 29008404 29008423 AGTAGAAGCCATAGGACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aire ENSRNOG00000001213 ENSRNOT00000001611 3 1 1 80 20 11369493 11369512 TTTGAAGAACAAGACCCGAG 58 11369554 11369766 TTCTGCTCATCTCTACCCTG 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584,ENSRNOT00000091216,ENSRNOT00000083458 2 5 5 80 10 56193926 56194209 TGCTTATGGAAACTTCTTCCTC 59 56194342 56194365 GAACAGATCTTCCATGGAATTAGG 59 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 2 2 2 80 10 109969455 109969559 ATGTCATCAAGGTCAGTGTC 58 109969602 109969620 TCTCTGGAGTAGACTCAGC 58 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000026182 2 1 2 168 1 85489179 85489197 GTTGCACTTCTCATACCGC 59 85489329 85489479 TCGACATACGGTTAGGGAC 59 NA Rattus norvegicus 81 Pfkl ENSRNOG00000001214 ENSRNOT00000001625 2 1 1 80 20 11412846 11412864 CCATCAGCAACAATGTCCC 59 11412908 11413293 GGTCACAACTCTCCATTGC 59 NA Rattus norvegicus 81 Ly6g6c ENSRNOG00000000843 ENSRNOT00000001119 3 1 1 81 20 5059368 5059728 GTGTACCTTGGGAAGATGTG 58 5059772 5059790 TTTCATTGAAGACCTCCCG 58 NA Rattus norvegicus 81 Olr1877 ENSRNOG00000010749 ENSRNOT00000014258 2 1 1 60 7 139835297 139835315 ATAGTGATCGCCCTCTCCT 60 139835255 139835276 CATCAACAAAGATCACCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053,ENSRNOT00000091209 2 3 3 85 19 62150202 62150223 ACCATCAACTATGACGAAAGAC 59 62146874 62150159 AGGAAGAAACAACCATCTTCAG 59 NA Rattus norvegicus 81 Phc2 ENSRNOG00000006004 ENSRNOT00000067912 2 1 1 80 5 146887183 146888196 CAGTCTTCCTCACTGAATCTG 58 146888238 146888256 TGTGGCTGAATTGACACTC 58 NA Rattus norvegicus 81 Klhdc3 ENSRNOG00000017495 ENSRNOT00000023979 2 1 1 81 9 16615242 16615393 TGATGTCAATACTCACAAGTGG 59 16615435 16615453 GACACAAGCTGAATGTCCA 58 NA Rattus norvegicus 81 Kif14 ENSRNOG00000037211 ENSRNOT00000012038 3 1 1 80 13 53380895 53380913 AAGCAGCATCTTGAACAGG 59 53380957 53382914 TTCTAAGGCCTGCTTTGTG 58 NA Rattus norvegicus 81 LOC100909494 ENSRNOG00000012973 ENSRNOT00000066242 1 1 1 80 10 87708418 87708438 TTCTAGCTGTTGTGGATCCAG 60 87708479 87708555 CTAGATCCACAGCAGGAAGG 60 NA Rattus norvegicus 81 LOC689599 ENSRNOG00000012115 ENSRNOT00000016155 2 1 1 80 9 114784637 114784655 GTCAGAGCAGAAGTGAAGG 58 114754970 114784593 CAGTTGGAAGTTCCCTTCG 59 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 2 2 2 81 8 82277429 82280540 TCAACAGTGTCCGATACTACC 59 82284060 82284078 CTCAGGTCATAGAGGCGAC 59 NA Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 2 2 2 80 2 115774713 115774734 CTATCTCATGCTAAAGCTCTCC 58 115774772 115788189 CCAAAGTAAATGAGCATACCCA 59 NA Rattus norvegicus 81 F8 ENSRNOG00000031197 ENSRNOT00000045926 3 1 1 81 18 372789 373565 TGGATCAAGGTGGATCTCC 59 372726 372744 AAAGGCTGGAAAGTCTGTG 58 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000058495,ENSRNOT00000067034 2 2 2 95 2 124401524 124403290 GGATTTCAGATGCATGGCA 59 124403349 124403367 CTAGTGAAGTGTGGCTGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 2 2 2 90 5 4971314 4971334 GACTTAAAGAAAGCAGGAGGA 58 4959567 4971263 GGACAAACCAATACCTTGTG 57 NA Rattus norvegicus 81 AABR07031691.1 ENSRNOG00000060281 ENSRNOT00000090569 2 1 1 60 18 27205967 27205985 TCCCAATGTGGATGATGGA 58 27205925 27205944 AATAGCTTCCAACCCTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.2 ENSRNOG00000060241 ENSRNOT00000084796 2 1 1 80 4 164201492 164201510 GATGTAAACAGACCTGCCA 58 164197505 164201448 GTAGCCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 AABR07062185.2 ENSRNOG00000060241 ENSRNOT00000084796 3 1 1 80 4 164201491 164201510 GATGTAAACAGACCTGCCAG 59 164197505 164201448 GTAGCCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312,ENSRNOT00000032273 1 2 2 115 14 44903307 44903326 GATGAAGATCCTGTCAGGGA 59 44903401 44905065 CAAGTGACAGACTTTACATCCA 58 NA Rattus norvegicus 81 Dvl3 ENSRNOG00000001708 ENSRNOT00000002323 1 1 1 80 11 84059527 84059545 ATTGGCTCCATCATGAAGG 58 84059370 84059483 CTCATTTACCTGCAACAGC 57 NA Rattus norvegicus 81 AABR07052692.1 ENSRNOG00000047487 ENSRNOT00000074765 2 1 1 80 3 69637205 69637263 GTGCTTGGAGACAGTAAAGG 59 69637144 69637162 TGCCAGGATAAAGATGGCT 59 NA Rattus norvegicus 81 Cdc25a ENSRNOG00000020737 ENSRNOT00000028141 1 1 1 80 8 117961149 117961168 CCTGTGAAAGCCACTTTGTC 60 117961206 117961773 CTCCTCATCATTCTTCAGATTCTC 59 NA Rattus norvegicus 81 Mfsd7 ENSRNOG00000023937 ENSRNOT00000037459 1 1 1 80 14 2315589 2316002 CTACTCTAATGAGTTCTCAGGC 58 2316043 2316061 TACAGGCCTAGAAGCAGTG 59 NA Rattus norvegicus 81 Mfsd7 ENSRNOG00000023937 ENSRNOT00000037459 3 1 1 80 14 2314767 2314785 TCTGGGCATCCTAATAGCA 58 2314828 2315269 TAGATGCCAAGCATCATAGG 57 NA Rattus norvegicus 81 Mapk1 ENSRNOG00000001849 ENSRNOT00000002533 3 1 1 80 11 88231791 88236621 GATCTCAAGATCTGTGACTTTGG 59 88231733 88231755 TACATACTCTGTCAAGAACCCTG 60 NA Rattus norvegicus 81 Eqtn ENSRNOG00000026323 ENSRNOT00000029441 3 1 1 80 5 113871637 113871658 AAACTTGTGAGAGCCAATACTC 59 113871460 113871599 TTTGATTAGAGCCTTCTGATGG 58 NA Rattus norvegicus 81 Naglu ENSRNOG00000032381 ENSRNOT00000052157 3 1 1 100 10 88979710 88979728 CTGTCACATAGCCTGGTCC 60 88979792 88980472 AATAGCGGTACCTGTTGGG 60 NA Rattus norvegicus 81 Ndufs7 ENSRNOG00000024568 ENSRNOT00000039728 3 1 1 105 7 12318929 12319572 ACATCTATGTGCCAGGCTG 60 12318842 12318860 CGGTACCAGATCTTCAGCT 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884,ENSRNOT00000083693 3 2 2 80 13 57308722 57308740 GAAACATGGTCCTCCAAGC 59 57308782 57309877 CAGCTGTTCAAACTGTATGGG 60 NA Rattus norvegicus 81 Spem1 ENSRNOG00000015419 ENSRNOT00000020675 1 1 1 150 10 56429430 56429537 CTTAGTGACCCTGCTCTGG 60 56429127 56429145 ACATCGGAGATGGACTTCG 59 NA Rattus norvegicus 81 Nus1 ENSRNOG00000000411 ENSRNOT00000000467 3 1 1 80 20 33573477 33577994 GCTTACTGAGTTCACATGGC 59 33578036 33578055 GAAGAAAGCCTAACGTGCTG 60 NA Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 3 2 2 80 14 3446467 3446486 GTGGAAACACAGTTTCTCCT 58 3444257 3446426 ATGATGGTGTAATAGTCAGGC 58 NA Rattus norvegicus 81 Krtap8-1 ENSRNOG00000043471 ENSRNOT00000064583 2 1 1 60 11 29618779 29618798 CTACCCACTGGGTTACAGTG 60 29618738 29618757 ATAGCCAACTGGAGAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap24-1 ENSRNOG00000048374 ENSRNOT00000071034 1 1 1 60 11 28583571 28583589 TGCTACATCCCTGTGACTC 59 28583529 28583550 CAAAGGTAGGGTTTACATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr446 ENSRNOG00000046122 ENSRNOT00000071646 3 1 1 60 3 73003941 73003959 CTGTGGTGATCCCTATGCT 59 73003982 73004001 CCTTTCACTTCCTTGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Diablo ENSRNOG00000029197 ENSRNOT00000047861 3 1 1 80 12 38496361 38496380 GGGAAGATGAATTCCCAGGA 59 38496421 38496554 CTGCTGCTTTGAAGTCATCTC 60 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660,ENSRNOT00000091113 2 2 2 86 9 17108151 17108169 CTGGACTGGGAGATTGTGG 60 17108218 17108316 GTACCGCTCATTGAGTTCCT 60 NA Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 1 2 2 80 7 120602154 120602173 CTGTGCTATGAGTACCTTGG 58 120601962 120602112 ATACATACAGCTGGACTCGA 58 NA Rattus norvegicus 81 Kdm3b ENSRNOG00000050200 ENSRNOT00000070930 1 1 1 80 18 27622872 27622891 TAGATGTGTCTGATGCTGTC 57 27622932 27624183 TGAGAACTTCTTCATCGTGAG 58 NA Rattus norvegicus 81 Elp5 ENSRNOG00000027628 ENSRNOT00000032481 1 1 1 82 10 56580498 56581958 ACTTACCAGACTTGGTGGT 58 56580434 56580452 TGTAGCTCAGAATGGAGGG 59 NA Rattus norvegicus 81 Prr21 ENSRNOG00000042164 ENSRNOT00000063869 1 1 1 92 4 166040597 166042629 CTCACATGAAGACCATGGC 59 166042685 166042703 ATGTCTGGATGAGGAGGAC 58 NA Rattus norvegicus 81 Prr21 ENSRNOG00000042164 ENSRNOT00000063869 3 1 1 93 4 166040596 166042628 GCTCACATGAAGACCATGG 59 166042685 166042703 ATGTCTGGATGAGGAGGAC 58 NA Rattus norvegicus 81 Arsa ENSRNOG00000012953 ENSRNOT00000017783 2 1 1 87 7 130450115 130450244 ATATTCCCATGACCAGGGTC 59 130450047 130450065 AACTAGGCCTTGGTCACAG 59 NA Rattus norvegicus 81 Cacng8 ENSRNOG00000057848 ENSRNOT00000078444 3 1 1 108 1 64333673 64334477 GTACCTGCTCCGAGTAGTC 59 64333583 64333602 TTTGGATTTGTAGACGCGAG 59 NA Rattus norvegicus 81 Zcchc9 ENSRNOG00000051682 ENSRNOT00000086300 2 1 1 96 2 20910548 20912024 AGAACTCAGATCGAATCATCAC 58 20910473 20910492 TTAGGTTTCTGTGGTTTGGG 58 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 3 2 2 80 11 86672526 86674249 CAGGAGCATATAGAGGTTTACC 58 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 AABR07057196.1 ENSRNOG00000005546 ENSRNOT00000007332 3 1 1 129 7 60070382 60070400 CCAACATGCAGGTTGAAGG 59 60070493 60070513 ACATTGCCAATCTGCATGG 59 NA Rattus norvegicus 81 Dld ENSRNOG00000006364 ENSRNOT00000008980 2 1 1 80 6 50612464 50612484 GTGACAGTGATAGGTTCTGGT 60 50611119 50612424 AATGCAGACTGTCTTAAAGCC 59 NA Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 1 2 2 80 13 68836906 68836925 AACACCATGACCACAAAGGA 60 68836212 68836865 TTCTTTGTTGCCACTTCTGAG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 3 2 2 80 14 77314620 77314725 AGTTTCAGAACTGGATGAGGA 59 77314560 77314579 CTTCGGAGAAGATGTTCCAC 58 NA Rattus norvegicus 81 LOC691113 ENSRNOG00000011713 ENSRNOT00000015807 3 1 1 113 4 100211483 100211814 TATATCAGGACGATGATCCCG 59 100211889 100211907 GCTTTGCAAGTTCCTCCTG 60 NA Rattus norvegicus 81 Ccdc163 ENSRNOG00000022953 ENSRNOT00000056967 2 1 1 80 5 135563669 135563793 CAGACTCAGACTCAGGTGAC 60 135563836 135563854 CTTGAACATCTGCTGCTCC 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784,ENSRNOT00000080304 3 3 3 80 6 136095809 136095827 CCACAGACTGTGAGAACCT 59 136095869 136096089 CCTTCATGATTTGCTCCAGAG 59 NA Rattus norvegicus 81 Ccdc146 ENSRNOG00000012932 ENSRNOT00000017374 3 1 1 80 4 10368162 10369586 ACCTAAGCCAGGAGAAATAGAG 59 10369627 10369645 TTCTGGATCACCTCCTTGC 59 NA Rattus norvegicus 81 Nudt14 ENSRNOG00000014362 ENSRNOT00000019550 3 1 1 97 6 137741840 137742272 GACACATGACAGTGTGACG 59 137741550 137741568 CTACCTCGCCTGCATAGAC 60 NA Rattus norvegicus 81 Pnliprp2 ENSRNOG00000017982 ENSRNOT00000068119 2 1 1 80 1 279925602 279925620 ATAAATCTCTTCCGGCCCA 59 279925662 279927531 ACAGAAGTTGTACTCTTTCCC 58 NA Rattus norvegicus 81 Rn60_1_0913.3 ENSRNOG00000051350 ENSRNOT00000076449 2 1 1 60 1 90123309 90123327 TGGCAACTTTATGAAGCCC 58 90123267 90123285 CACCCTGTTACTGTACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 2 2 2 80 10 15490657 15491083 AGGGCTAACAAGTCAGAGG 59 15491126 15491145 GTTGAAGCTGAGGAAAGGTG 59 NA Rattus norvegicus 81 Adtrp ENSRNOG00000014481 ENSRNOT00000060403 1 1 2 80 17 22620876 22633063 CTGAATCTGCTCTTGCAGG 59 22633106 22633125 GTCTTTCCTTCCGATGACTC 58 NA Rattus norvegicus 81 LOC100912034 ENSRNOG00000050469 ENSRNOT00000074048 2 1 1 95 4 31387740 31387758 TCACATTGAGGATCTGCCG 60 31387813 31391470 CATTTAGACACCTGTTGTCTCTG 60 NA Rattus norvegicus 81 LOC100912034 ENSRNOG00000050469 ENSRNOT00000074048 3 1 1 95 4 31387739 31387757 TTCACATTGAGGATCTGCC 58 31387813 31391469 ATTTAGACACCTGTTGTCTCTG 58 NA Rattus norvegicus 81 Slc2a13 ENSRNOG00000015741 ENSRNOT00000021153 3 1 1 80 7 132681563 132681582 TTGACGAGGAGTATGACAGC 60 132581213 132681522 TGCAGATTATAGGTCCAGCTG 60 NA Rattus norvegicus 81 Mir489 ENSRNOG00000036271 ENSRNOT00000054394 2 1 1 60 4 28659571 28659589 CACGTTCTCGTGTATTCCA 58 28659529 28659550 TGTTCCTGTAACAGTTTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000007876 3 1 2 129 9 17212320 17212343 GCATCTCTAAAGGATGAAGTTCTG 60 17212213 17212234 CACTTAACACCAAACCAACGT 60 NA Rattus norvegicus 81 AABR07027098.1 ENSRNOG00000048372 ENSRNOT00000071112 1 1 1 80 17 14372590 14373808 TCACAGAGGATTTGAAGATGAG 58 14372531 14372549 CCCTAAGAAACGGTAGCCT 59 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 3 2 2 95 7 12580009 12580027 TCAACAAGAAGCTGTGGAG 58 12579103 12579950 ACTTCATGTACTGTGTCCG 57 NA Rattus norvegicus 81 Astl ENSRNOG00000022603 ENSRNOT00000039043 3 1 1 81 3 119789143 119789162 CTTCTGGCATGAGCATTCTC 59 119789206 119792044 GATCTCAAAGCCTGGGAGG 60 NA Rattus norvegicus 81 Lim2 ENSRNOG00000017681 ENSRNOT00000023858 1 1 1 104 1 98500402 98500420 ATTGGATGCAATACCGGCT 60 98497609 98500334 TCCAGTATGCGATGCTCTC 59 NA Rattus norvegicus 81 Nags ENSRNOG00000020879 ENSRNOT00000028332 3 1 1 95 10 90088326 90089097 TCAATCCTTGGTACTTCAAGC 58 90089154 90089172 CATAGGAGTCCCGGATGTC 59 NA Rattus norvegicus 81 Luc7l ENSRNOG00000020488 ENSRNOT00000060078 2 1 1 80 10 15555371 15555395 GATGAATCCCAGAAGATTCTTATGG 60 15555428 15561815 GGAATTTCTGTATTCTTCCTCTGC 60 NA Rattus norvegicus 81 RGD1559896 ENSRNOG00000018836 ENSRNOT00000025512 1 1 1 80 19 57400519 57409860 GGAGACAAGGAGTCAAATGG 58 57400458 57400479 GTATCATTGGTCATAGTGGCAG 59 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945,ENSRNOT00000006162 1 2 2 80 3 1847820 1850704 TGACCAAGGATGAAGAGGAG 59 1847759 1847779 TGACTTCAGCTACTTCTTTGG 58 NA Rattus norvegicus 81 LOC100360635 ENSRNOG00000016507 ENSRNOT00000022367 1 1 1 82 4 118172540 118172560 GAACCTCGTGATTGATGAGTG 59 118172604 118174692 TGTTTCCTCGGATGACCAC 60 NA Rattus norvegicus 81 Mir3591 ENSRNOG00000035602 ENSRNOT00000053725 3 1 1 60 18 60755337 60755356 TGTTTAGTGTGATGATGGCG 59 60755296 60755315 CTCTGGAGTGTGACAATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122,ENSRNOT00000082030 3 2 2 80 10 70700140 70700266 CAGACACAACAAAGCTATTCTG 58 70700307 70700325 ATAACCGGAGTAACCACCA 58 NA Rattus norvegicus 81 Mpst ENSRNOG00000000185 ENSRNOT00000000201 2 1 1 123 7 119627168 119627186 TCCTGGAGAACTTGGATGC 59 119630844 119630863 TTTACTGAGCCAGGGATGTG 60 NA DesignNoJunction Rattus norvegicus 81 Grk1 ENSRNOG00000018430 ENSRNOT00000024999 3 1 1 80 16 81156320 81156338 TCTGGCCTATGCATTCGAG 60 81156381 81157708 ATGTGGTACCTTACGTCACC 60 NA Rattus norvegicus 81 Tmem97 ENSRNOG00000022657 ENSRNOT00000011808 2 1 1 92 10 65820456 65820474 TACTTCGTCTCGCACATCC 60 65813552 65820400 CAACAGGTTGCTGAACTCC 59 NA Rattus norvegicus 81 Pgbd5 ENSRNOG00000026791 ENSRNOT00000058080 3 1 1 80 19 57132855 57134809 GAAGCAAGGCATCTACTGC 59 57132793 57132811 TTGGTCAGCATGGATGGAG 60 NA Rattus norvegicus 81 LOC100365321 ENSRNOG00000027055 ENSRNOT00000034929 1 1 1 97 4 59365486 59365505 AATGAGACGACCAAACACTG 59 59365565 59371148 TCCAGAACTGGAACTCAGC 59 NA Rattus norvegicus 81 Olr1542 ENSRNOG00000046780 ENSRNOT00000060891 3 1 1 60 11 43357570 43357591 AAATCTAAAGAGGGTAGAGGCA 59 43357531 43357549 ACACAGACAGAAAGTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1555 ENSRNOG00000058137 ENSRNOT00000086976 2 1 1 60 11 43594423 43594443 TTATCATCCACAGTGACACCA 59 43594383 43594401 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxp2 ENSRNOG00000054508 ENSRNOT00000087146 2 1 1 80 4 41908772 41908931 CATAAGGCAGGCTATCATGGA 60 41908972 41908991 GCAAATGTCCGTGTAAACCA 60 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 1 2 2 80 8 4322708 4322729 GGACTTAGTTTGGTAACAACTG 57 4322768 4323113 ATAAGTAAGCTGACGGAACTG 58 NA Rattus norvegicus 81 LOC100361515 ENSRNOG00000017915 ENSRNOT00000024348 1 1 1 80 10 56617616 56617950 GCGAGAGTTACCTAGTTAACC 58 56617992 56618010 GAGGAGCCAGAGTATCCTG 59 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 1 2 2 80 8 118627833 118627962 CTGTGTACATTGATCAGACCA 58 118628004 118628022 TGCCTGTTAGTACATCCCA 58 NA Rattus norvegicus 81 LOC298795 ENSRNOG00000004188 ENSRNOT00000005553 3 1 1 60 6 23757626 23757644 TGAAGGGTGACTACTACCG 58 23757668 23757686 ATGCGCTTCTTGTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gipc2 ENSRNOG00000042152 ENSRNOT00000065811 2 1 1 80 2 257302755 257308194 TACGGTAGAAGATCTGCCCT 60 257302694 257302715 AATCCCATGTACAGTTCAAGGA 60 NA Rattus norvegicus 81 Poc1b ENSRNOG00000024450 ENSRNOT00000031905 3 1 1 80 7 41368278 41398942 TTGATTCAACCACAACAGCG 60 41398979 41399003 GGTTCAAGAAATACCTACAGATGTC 60 NA Rattus norvegicus 81 Gripap1 ENSRNOG00000009071 ENSRNOT00000012646 3 1 1 80 X 15539510 15539740 ACAAGATCAGGTGTCCAGC 60 15539448 15539467 GTCCTCAAGGCATTGTTCTC 59 NA Rattus norvegicus 81 MGC94207 ENSRNOG00000045765 ENSRNOT00000021775 3 1 1 80 7 117788388 117788406 TATGTGGATCACCAAGGCC 60 117787724 117787915 GAATTGCAGGTCTTTGAAGCA 60 NA Rattus norvegicus 81 RGD1311863 ENSRNOG00000012872 ENSRNOT00000017405 1 1 1 80 1 234699017 234699036 TCAGGAAATACTGCTGACCA 59 234698234 234698975 TTTCCATTGGCATCTTCTCC 58 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000022022 3 1 3 80 17 30562497 30562516 TCAGGATATTATACTCGCGC 57 30562559 30563346 TAGTAGTCACCAGCTCCTG 58 NA Rattus norvegicus 81 Clec14a ENSRNOG00000022697 ENSRNOT00000030706 3 1 1 60 6 79305257 79305275 TCAGGAAGTATGATGCCCA 58 79305215 79305234 CGAAAGTCAGAGAAACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac1l ENSRNOG00000013695 ENSRNOT00000018423 2 1 1 60 9 84893766 84893785 GGCTAGGTTGCTTCAATCTG 59 84893725 84893743 CTCTTCACGAACTCCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935,ENSRNOT00000006408 1 2 2 80 3 122131289 122135818 TCTATGTACTCGCCAAACCT 59 122135860 122135879 TGAAGTTCACTGTCTGTCCA 59 NA Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402,ENSRNOT00000067379 3 2 2 89 10 49023094 49023112 CAAGATGTACGGCAAGCAC 60 49023164 49024577 GAGTACAATTTGTGGCCAGC 60 NA Rattus norvegicus 81 LOC680039 ENSRNOG00000027623 ENSRNOT00000029191 2 1 1 80 14 79313082 79313100 AAAGCAGGTTGTCAGTTCC 58 79313142 79318390 AGTGTTCAGTACAGGAAACTC 58 NA Rattus norvegicus 81 Rgs13 ENSRNOG00000003888 ENSRNOT00000005163 1 1 1 81 13 60973342 60973360 GGGCAGAATTTCTAGAGCA 57 60972250 60973299 TGTACTGTCGATGTTGATCTC 58 NA Rattus norvegicus 81 Murc ENSRNOG00000008027 ENSRNOT00000010561 2 1 1 81 5 64413404 64420179 ATCTTCCAGGAGGATGTTCC 59 64420223 64420241 CAGCTTCCTCCTCGTTCTC 60 NA Rattus norvegicus 81 Arf6 ENSRNOG00000004791 ENSRNOT00000006355 3 1 1 60 6 91697569 91697587 GCACCGCATTATCAATGAC 58 91697611 91697629 CTTGTTGGCGAAGATGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl10l ENSRNOG00000032720 ENSRNOT00000047597 2 1 1 60 6 88231695 88231714 AATTTGAAGACAAGGTGGCG 60 88231654 88231673 ATGTACTTGACTCCACAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan5 ENSRNOG00000015913 ENSRNOT00000021381 2 1 1 85 2 244213858 244216064 AGGAATACTGGCAGTGCTG 60 244216113 244216131 GCTTGCATTGGAGTCTGTG 60 NA Rattus norvegicus 81 Dear ENSRNOG00000033147 ENSRNOT00000042146 2 1 1 60 2 184246959 184246979 AATCCATACAGAAGACCACCA 59 184247000 184247019 TTCATGTAGTTCCACTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dear ENSRNOG00000033147 ENSRNOT00000042146 3 1 1 60 2 184246679 184246697 TTTGCCAAAGTGTCAAGCC 60 184246720 184246739 CAGATACATAGCCATGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 1 3 3 80 10 54184697 54184715 TGTCCCAGCAGTTCTTCTG 60 54184757 54198510 GTGGTATCCATTCACTGTTGG 59 NA Rattus norvegicus 81 Senp6 ENSRNOG00000024336 ENSRNOT00000015741 2 1 1 80 8 87557681 87559873 ATGACCCGGATGATAGCAG 59 87559916 87559935 GCTTTAAATGCCACTGTCCT 59 NA Rattus norvegicus 81 Olr1455 ENSRNOG00000045676 ENSRNOT00000070882 3 1 1 60 11 55497270 55497289 ATTCTTCTCGGGCTCTTCAG 60 55497311 55497330 CTAAGACAGCAGAAAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051562.1 ENSRNOG00000042083 ENSRNOT00000063862 1 1 1 88 3 17081246 17081469 GATTTCTGGTACCTGTGGG 58 17081176 17081195 TGCAGTTTATAGTGACCGTC 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 1 3 3 80 10 74457423 74467242 GGTAGAACATCAGTTGCGG 59 74467284 74467304 ACTTGCTGGAACATCATTAGG 58 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325,ENSRNOT00000076529 1 2 2 80 8 4637093 4651635 GGAAGTCTAAAGTGGACCTG 58 4651677 4651696 GATTCACCGAGTGATTCCTG 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000085724 1 1 2 80 20 4024440 4024458 TGGAGACGTCTACAGTTGC 60 4024502 4025447 TATTCAGACTGAGCCACCC 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000024849 ENSRNOT00000050734 1 1 1 80 13 73728987 73730380 TGTGACAGAGGCTGAAAGG 60 73730422 73730442 TTTCTCAATGTTTCCTGTGCG 60 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000024849 ENSRNOT00000050734 2 1 1 80 13 73730457 73731452 GTCTCTGGACCTATGGTTCC 59 73731491 73731513 AGGAATAGTAGCTGTTGACAGAG 60 NA Rattus norvegicus 81 LOC100911243 ENSRNOG00000042470 ENSRNOT00000042140 2 1 1 139 X 15419087 15419105 GGTAGGGAGCATCCTAACC 59 15422529 15422547 TAGACTTTGTTGGCAAGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ptpn22 ENSRNOG00000019614 ENSRNOT00000026556 2 1 1 80 2 206375893 206380850 CCAAATCAGATCAACATCAGGA 59 206380891 206380909 CGTCAGCAAGAAAGAAGGA 58 NA Rattus norvegicus 81 AABR07033020.1 ENSRNOG00000018224 ENSRNOT00000024520 2 1 1 81 11 1773324 1773348 TTGTTGGCTATGATGAAGACC 58 1773388 1773409 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Ric3 ENSRNOG00000014691 ENSRNOT00000020137 2 1 1 80 1 173642892 173642912 GCAAGTTCATTGACACATCTC 58 173634027 173642851 TCTCTTCTGGGTAACCTTCC 59 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 1 3 3 80 1 135354891 135360195 TGTCATAAGGTGCAACCTG 58 135354829 135354847 GGGTTCATGGTCACTAGGT 59 NA Rattus norvegicus 81 Gdi1 ENSRNOG00000056870 ENSRNOT00000089814 1 1 1 80 X 156402438 156402459 CATCAAGAATACCAATGATGCC 58 156402103 156402399 ACATAGATGTCTGACTTCCTG 57 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 2 2 2 143 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309114 42309132 AGAAGTCCATGTGGCTGAG 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105,ENSRNOT00000082037 2 2 2 80 5 153703046 153703065 GACTGAGATCCTTGGATTCG 58 153700929 153703004 TTGGAATCTGGGTTCTTCAC 58 NA Rattus norvegicus 81 Vax1 ENSRNOG00000008824 ENSRNOT00000011743 1 1 1 113 1 280337452 280338582 CTAGTCCGAGATGCCAAGG 60 280337357 280337375 CAGTCTGTAGAGCTGCTCC 60 NA Rattus norvegicus 81 Strn ENSRNOG00000004806 ENSRNOT00000006527 2 1 1 80 6 1275969 1284127 TCTGAAGCAGGAAAGAGCC 60 1275907 1275926 TAGCTTGGAGGCTTCATGTC 60 NA Rattus norvegicus 81 Pycard ENSRNOG00000019675 ENSRNOT00000026699 2 1 1 83 1 199438840 199438861 CTCACAATGACTGTGCTTAGAG 59 199438548 199438796 CACAGCTCCAGACTCTTCC 60 NA Rattus norvegicus 81 Prokr2 ENSRNOG00000021266 ENSRNOT00000028889 1 1 1 80 3 125016849 125016867 TACCTTCGTACAGTCTCCC 58 125009938 125016808 GTGGACAATAGCGAGATATCTG 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 1 2 2 80 2 23322014 23323956 TCAGTATAGGCCAAGTTTCC 57 23323998 23324017 CCAACTCTTTGCATAACCTG 57 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774,ENSRNOT00000079917 2 2 2 80 5 7751240 7763399 TTGTCAAATCGATGACCTTCTG 59 7751181 7751204 GTTGGTATCACATACTCTGTTGTC 60 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 3 1 1 91 16 14320959 14323462 TTTGATGTGTTGGCCTTGC 60 14323513 14323535 GTATAATTAGTGCCGTCTACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695 3 1 2 113 9 100833052 100833070 AGCGTATATCGGAATGTGG 57 100833147 100838970 CCATGTGATACCTGCTGAG 58 NA Rattus norvegicus 81 Hspb9 ENSRNOG00000036819 ENSRNOT00000055248 1 1 1 60 10 88620879 88620897 GCTGCTCAAGGATGATCTG 58 88620920 88620939 CTGGAAACTTGGTTCCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efna5 ENSRNOG00000034177 ENSRNOT00000045096 2 1 1 80 9 110057269 110062674 TCATTAGAACCAGCAGATGAC 58 110057209 110057227 TATCCTTGGTGTTTGTGCC 58 NA Rattus norvegicus 81 Rmnd5b ENSRNOG00000047396 ENSRNOT00000075555 2 1 1 80 10 34980523 34980542 CCTATCAAGCTCATCTGTGG 58 34980383 34980481 GGGACACTTTAGCTTTCCTC 58 NA Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000072750,ENSRNOT00000081829 3 2 2 66 1 81396915 81396933 GATTCCCAGAATGCAGCTC 59 81396963 81396981 CTCCTAACCCAGCACTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp951 ENSRNOG00000043048 ENSRNOT00000044065 2 1 1 80 14 6284035 6284055 GATCCTTCCCAGAAGAGTCTC 59 6283778 6283995 TTCCCAGTAAGAGCCTATAGC 59 NA Rattus norvegicus 81 Rn60_20_0064.3 ENSRNOG00000052841 ENSRNOT00000080672 3 1 1 60 20 4240674 4240693 CTTATCCATCAGGCAAGCTC 59 4240633 4240652 GTTCCTTTCGTCATAGTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srgap3 ENSRNOG00000006509 ENSRNOT00000009066 1 1 1 80 4 144687902 144689953 ATTGAGAACGAAGAGGTTAGGA 59 144687843 144687861 ATCAAAGTCCTCCACGGTC 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 1 2 2 80 7 15785804 15786683 AATCGGAGAATTCAGGTGGT 59 15786726 15786744 TGTCTTCTGTTGGTGGGTC 60 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 2 2 2 87 16 48122377 48210101 CATGACATCAGGTGATGTGTC 59 48210150 48210168 GGCCAAGCAAAGGATTTCC 60 NA Rattus norvegicus 81 Rn60_16_0006.1 ENSRNOG00000050746 ENSRNOT00000070877 2 1 1 131 16 520239 520257 TCCTTGAGGTGATAGCAGC 59 517408 517426 CAGCATAGCCTTCAGTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_16_0006.1 ENSRNOG00000050746 ENSRNOT00000070877 3 1 1 132 16 520240 520258 GTCCTTGAGGTGATAGCAG 57 517408 517426 CAGCATAGCCTTCAGTCCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000020775,ENSRNOT00000074479 1 2 7 60 19 15139935 15139954 CTGATCCTGGTGTTTCTTGC 59 15143728 15143746 CTACAGGTGGTGAGGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Crls1 ENSRNOG00000021273 ENSRNOT00000028900 3 1 1 80 3 125506944 125511544 GGCTAACGGATTTGTTGGA 58 125511588 125511606 GTGGATCAAGAGCACTTCC 58 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 3 2 2 80 1 219124078 219124580 GCTTGAAGTCAACAGATTTGC 59 219124621 219124640 ATGGATGAGATCTTGGCCTG 60 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 3 2 2 80 7 70535952 70535970 AGAACATAGAGACGGAGCA 58 70534131 70535908 CTGTCTTGCTGACCTTCTC 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904,ENSRNOT00000036642 3 4 4 81 8 125086634 125086653 CCTTTGGACACGTGATATCC 59 125070956 125086590 GACTCCATTCTGGCAAAGC 59 NA Rattus norvegicus 81 Fut2 ENSRNOG00000021011 ENSRNOT00000028519 1 1 1 80 1 101634402 101639594 GTTAAATCCAGCAGCCATGG 60 101634341 101634361 GTCACGAAGACAAAGATGAGG 59 NA InUTR Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 1 2 2 80 9 25433014 25433032 TTTGAACAGACAGCACACG 59 25433073 25436013 TCTTTACAAAGTTGCTTGGTGG 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 1 1 4 80 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353559 167353578 GATCTGAATCTGAGTCCTGG 57 NA Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905,ENSRNOT00000057788 1 2 2 81 12 38291554 38291575 GAATCCCATGAAATTTGCTGAG 58 38291617 38292110 AGACTGAGATTTGTCGCCT 59 NA Rattus norvegicus 81 AABR07065839.1 ENSRNOG00000050652 ENSRNOT00000073713 1 1 1 60 6 143206571 143206591 ATCAGAAGTTTAAGGGCAAGG 58 143206531 143206549 ATGTAGGCTGTGTTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scyl3 ENSRNOG00000025318 ENSRNOT00000003551 1 1 1 80 13 82235054 82235072 GATGGGAAATGCGCTTCAG 60 82235115 82236473 TGTCTTTAAGTGCTTGGCAG 59 NA Rattus norvegicus 81 Col28a1 ENSRNOG00000033618 ENSRNOT00000045270 3 1 1 80 4 34048694 34049976 CTGTACAAAGATCCAAGATGCG 60 34048635 34048656 TTTGTCATAATACCAGCGAACC 59 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 3 1 1 80 16 50358467 50358485 TATCGTGGTGGACATCCTG 59 50340727 50358424 ATATTCCCTGCGTTCCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Moxd2 ENSRNOG00000012916 ENSRNOT00000017495 3 1 1 80 4 69121968 69122158 AGAACCTTCCTGGTATCCG 59 69121906 69121926 GGACTCCCATGTCATATTTGC 59 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 2 2 2 80 6 104322442 104323479 AATGCTACATAAGGCTCCAG 58 104323522 104323540 TTTCTGATTCGATTCCGCT 57 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 3 2 2 80 6 104322442 104323479 AATGCTACATAAGGCTCCAG 58 104323521 104323540 TTTCTGATTCGATTCCGCTC 59 NA Rattus norvegicus 81 Tnfsf12 ENSRNOG00000045670 ENSRNOT00000064401 2 1 1 96 10 56298572 56298591 TTCCTGGAACAACTAGTCCG 60 56297633 56297732 GTGGATGAACCTCATAATGGG 59 NA Rattus norvegicus 81 Asb1 ENSRNOG00000020322 ENSRNOT00000027528 1 1 1 80 9 98682293 98684483 AAAGAAGCCAGAAGTATTCCC 58 98684524 98684543 CAGTCGGTATTTGCCAAGAG 59 NA Rattus norvegicus 81 Tymp ENSRNOG00000032394 ENSRNOT00000040541 2 1 1 80 7 130345773 130345792 GATGGAATCCTGTATGCTGC 59 130345608 130345731 CTTACTGAGGATTGACGCTG 59 NA Rattus norvegicus 81 Olr1369 ENSRNOG00000050820 ENSRNOT00000072476 2 1 1 60 10 12508512 12508532 GAACCCTTTCATCTACAGCCT 60 12508472 12508491 GAGCACTTTCCTTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc10a3 ENSRNOG00000060580 ENSRNOT00000082124 3 1 1 146 X 156336480 156336998 GGAAGCAGTTACCTTACTTTGG 59 156338537 156338556 GGAATGTCCTGAGAAGGGTC 60 NA InUTR Rattus norvegicus 81 Cpeb3 ENSRNOG00000020689 ENSRNOT00000047387 3 1 1 80 1 255685222 255694410 CCTTCGAGCTGTTGAACTG 59 255685160 255685179 TCTGGGTCTGTATCAATGCC 60 NA Rattus norvegicus 81 Txndc5 ENSRNOG00000013469 ENSRNOT00000018310 3 1 1 86 17 26944693 26946876 GATTGGCAAGGTTGACTGC 60 26946926 26946944 TCTCGAAACCAGAGCAGAG 59 NA Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000091558 3 1 2 107 14 6783549 6786066 GGGAAAGTGTCACAAGCTG 59 6783460 6783478 CCCTCTGTTCCTTTACCCA 59 NA Rattus norvegicus 81 Mns1 ENSRNOG00000057867 ENSRNOT00000077613 1 1 1 80 8 79062607 79064928 AGTACGAGCAAATGAAACGTG 60 79064967 79064988 CATTCTCTTCCTTCAGTAGCCT 60 NA Rattus norvegicus 81 Trmt12 ENSRNOG00000008978 ENSRNOT00000011876 3 1 1 60 7 98749261 98749279 ACTGAGAAACTTCGAGTGG 57 98749303 98749321 CATAGAGATCCACCAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mutyh ENSRNOG00000017887 ENSRNOT00000024375 1 1 1 80 5 135671880 135672021 GGAGAGCCTATGCAGTCTG 60 135672060 135672083 ATCGGGTATAATAGTCGATCACTG 60 NA Rattus norvegicus 81 LOC312273 ENSRNOG00000013203 ENSRNOT00000017673 1 1 1 80 4 69191461 69192431 GAAATTTGGCTTTGAGAGTCC 58 69191401 69191419 TAGGCCTTGTGACAAACAG 58 NA Rattus norvegicus 81 Pde6h ENSRNOG00000005947 ENSRNOT00000007905 1 1 1 85 4 170960866 170962778 GCTAGGAACAGATATCACGGT 60 170962825 170962843 AGATGATCCCGAACTGAGC 59 NA Rattus norvegicus 81 Zc3h12c ENSRNOG00000012470 ENSRNOT00000080043,ENSRNOT00000016637 1 2 2 80 8 56673385 56673405 AGAGATCGTGACAGATGATGG 60 56656916 56673344 TTGTTTCCATGGCTCATTGC 60 NA Rattus norvegicus 81 Ubl4a ENSRNOG00000053061 ENSRNOT00000091810 1 1 1 80 X 156341250 156341269 TCGGATAAGCTGAATGTCCC 60 156341311 156341571 TGACAGTCGCTTCTCATCTG 60 NA Rattus norvegicus 81 Med11 ENSRNOG00000019384 ENSRNOT00000085810,ENSRNOT00000026335 3 2 2 174 10 57057749 57057913 CAGGAACAGCAATCCTGGA 60 57058795 57058813 GAAGAATAGCTGGAGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Il18 ENSRNOG00000009848 ENSRNOT00000013093 3 1 1 80 8 55013713 55013731 TGACCCTATCTGTGAAGGA 57 55013773 55015951 GTGGATTCATTTCCTCAAAGG 57 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 1 2 2 80 1 166433670 166453782 GCACAAGATCAAGTGCAGG 60 166453825 166453844 CGGTATTCTATGTCGTGCAG 59 NA Rattus norvegicus 81 Ncapg2 ENSRNOG00000004968 ENSRNOT00000035255 1 1 1 80 6 144309118 144309136 CAGGACTTCATGTTCCACG 59 144309178 144310530 AAAGTAACTCAACACCTCTCG 58 NA Rattus norvegicus 81 Mpv17 ENSRNOG00000049430 ENSRNOT00000034207 1 1 1 83 6 26595936 26596169 AAACTGAAGCGGGACTACC 60 26596431 26596449 GACCAGGTAGAAGTTGGCT 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398,ENSRNOT00000065171 2 2 2 80 9 104869042 104869938 GGCTCATGGTATGATATTTGGT 58 104868983 104869003 GTCTCTAACTTTGACGGAGAC 58 NA Rattus norvegicus 81 RGD1560883 ENSRNOG00000013821 ENSRNOT00000018479 2 1 1 77 6 146470295 146470316 TGGAGATTTGACAAACTTCCTC 59 146467254 146467275 TCCAGGATCATTTCTTCATGGT 60 NA DesignNoJunction Rattus norvegicus 81 Vamp1 ENSRNOG00000019219 ENSRNOT00000025081 1 1 1 67 4 157730118 157730136 GATTACAGCAAACCCAGGC 59 157730365 157730383 GACCTTGTCCACATTCACG 59 NA DesignNoJunction Rattus norvegicus 81 Ndufs8 ENSRNOG00000017446 ENSRNOT00000023526 3 1 1 94 1 219143048 219143506 CCGCTACGTACAAGTATGTG 59 219142973 219142991 TGTCCACATCAGAATCCGA 58 NA Rattus norvegicus 81 Slc19a3 ENSRNOG00000057256 ENSRNOT00000083667 1 1 1 80 9 88768048 88768067 CATCTGGGTGTGCTATACTG 58 88765081 88768005 GCAATCTGAAAGACAGCGA 59 NA Rattus norvegicus 81 Slc19a3 ENSRNOG00000057256 ENSRNOT00000083667 3 1 1 80 9 88810395 88810415 CTACATAAAGGTCGACTGGG 58 88768086 88768104 AGTAACAGAGATCCTGCGA 58 NA Rattus norvegicus 81 LOC100363436 ENSRNOG00000049804 ENSRNOT00000072374 2 1 1 80 4 130649761 130649784 CAGGTACTACTCTTCAGATGAG 57 130649700 130649718 CAAGATTCAAAGAGGCTGC 57 NA Rattus norvegicus 81 Pld2 ENSRNOG00000019604 ENSRNOT00000056998 1 1 1 80 10 57177702 57179190 CTGTTTCAGTGTCATTCTTGG 58 57179232 57179250 AGCTGGAAGAAGTCATCAC 57 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366,ENSRNOT00000078044,ENSRNOT00000084602 2 3 3 80 6 3344109 3344127 CGTTAGCAGGGAAACACTC 59 3340529 3343343 ATGTTAGCGCCCTTTATATCTC 58 NA Rattus norvegicus 81 Olr896 ENSRNOG00000031510 ENSRNOT00000040141 2 1 1 60 7 5195253 5195272 TGCTAGTCAGAGGTCAAAGG 59 5195212 5195235 GATGGAGATTACGATCATATGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mut ENSRNOG00000050843 ENSRNOT00000075279 2 1 1 80 9 23337529 23337548 CTGTAGCTGAAGGAATCCCT 59 23335961 23337492 CTTCAGAACCAGAATCTATTCTAGC 59 NA Rattus norvegicus 81 Hectd3 ENSRNOG00000018363 ENSRNOT00000024737 1 1 1 80 5 135862516 135862668 GAACATTGACGAGACCCTG 58 135862711 135862730 ATTCGGATCTCAATGACTGG 58 NA Rattus norvegicus 81 RGD1564345 ENSRNOG00000008594 ENSRNOT00000011359 2 1 1 109 4 23718023 23718041 GACCTCAGACCTCAAAGAC 57 23717362 23717382 CGATTATGGACGATGAAAGAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 3 1 1 74 2 25235139 25235157 GAGGTATCACCCTTCTGGC 60 25225110 25235101 TCCCTTTACTGTTGGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Iqcd ENSRNOG00000001378 ENSRNOT00000001860 3 1 1 81 12 41496940 41496958 GGAACCAGGAGATCATCGA 59 41495325 41496895 TTCTCCTTCTCCACCTCTG 58 NA Rattus norvegicus 81 Lhpp ENSRNOG00000017097 ENSRNOT00000022971 2 1 1 80 1 204648267 204648287 ACGCTATTACAAGGAGACCTC 59 204648328 204649234 TCGATACCACAGGCATACTC 59 NA Rattus norvegicus 81 Fscb ENSRNOG00000032241 ENSRNOT00000046828 2 1 1 60 6 86222846 86222867 GGAAGAAAGTGATGAACCTGAG 59 86222807 86222827 TCTCCTTCTATATTCCTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dek ENSRNOG00000016152 ENSRNOT00000021751 1 1 1 105 17 17970042 17970060 TTATCGTGGAGGGCAAGAG 59 17970129 17970369 TTCTGACCCTTCCCTTGTG 59 NA Rattus norvegicus 81 Bhmt2 ENSRNOG00000040120 ENSRNOT00000061708 2 1 1 81 2 23273253 23276689 ATCAGAGCAAGGGCTAGAC 59 23273190 23273209 GCTTTGATAGGGAAGGACAG 58 NA Rattus norvegicus 81 N6amt1 ENSRNOG00000001603 ENSRNOT00000002182 3 1 1 101 11 27011960 27015009 CTGAAGAGGTAGGAAGCCAC 60 27015073 27015091 AGAGAAGTTGTGAGGCCAG 59 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076240,ENSRNOT00000055235 2 2 3 100 1 167309270 167320523 ATGATATGGTGATGGCATGC 59 167320586 167320604 AGTACGTGAGAGCAGTCAG 59 NA Rattus norvegicus 81 Cdc7 ENSRNOG00000002105 ENSRNOT00000068520 1 1 1 87 14 3835586 3836373 GCAGAGAAACTCATCAAGCA 59 3835518 3835536 CAGCCTTTGTAGAAACGGC 60 NA Rattus norvegicus 81 Oprd1 ENSRNOG00000010531 ENSRNOT00000014084 2 1 1 118 5 150293020 150322739 ATCGTCCGGTACACTAAGC 59 150292920 150292939 GTTTCCATCAGGTACTTGGC 59 NA Rattus norvegicus 81 RGD1559848 ENSRNOG00000027798 ENSRNOT00000021014 1 1 1 60 6 103718063 103718081 AGAGGAAGACAAGCGTGAG 59 103718021 103718040 CAGAAGCCTTCGATAACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crnkl1 ENSRNOG00000040045 ENSRNOT00000061588 2 1 1 60 6 18351209 18351229 AGAACTGTGATTAGCAACTGG 58 18351169 18351191 GAATTTCCTTCAGACTTTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr81 ENSRNOG00000003243 ENSRNOT00000004365 3 1 1 80 10 62283336 62283355 GACAGAGAAGAGGAAGAGGA 58 62282541 62283293 CTTGCAGGCTGTATCAAGG 59 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 3 2 2 81 5 135363565 135366388 TGCAGTAGGTGGATACACG 59 135366432 135366451 GGTATCGAAACGCTCTACAC 59 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 3 2 2 80 6 7926985 7927086 TCTTCCCACCAAAGAGTACC 59 7927126 7927147 CCACTTCACTTTCTGCATACTG 60 NA Rattus norvegicus 81 Ldoc1l ENSRNOG00000021671 ENSRNOT00000039588 3 1 1 60 7 125465465 125465484 TCATGATCTTTCAAGCCTCC 58 125465424 125465442 GATACCAGGAAGGCCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp3 ENSRNOG00000005009 ENSRNOT00000006641 3 1 1 284 10 57386704 57386722 GTGAATTAGGGCGAGAGCA 60 57392763 57392781 ATGTCTTCCTTGGGAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nab2 ENSRNOG00000008415 ENSRNOT00000057745 2 1 1 80 7 70967256 70967275 TCTTCCTTGAAGGGATCCAG 59 70966747 70966852 TTCTCCAACCTCTTGTTTCAG 58 NA Rattus norvegicus 81 C1qtnf2 ENSRNOG00000003870 ENSRNOT00000005161 3 1 1 91 10 29080418 29080437 AGGAATGGTGGGAAGAATGG 60 29080491 29083237 CAGGTGGACCTTCTTCTCC 59 NA Rattus norvegicus 81 Zfp280b ENSRNOG00000028441 ENSRNOT00000081733 1 1 1 60 20 13570852 13570870 GCGGAGTCAAGATCAACAG 59 13570810 13570831 TATAATCAGACTCGGACAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp169 ENSRNOG00000017092 ENSRNOT00000022932 1 1 1 80 17 16460531 16468717 TCTGTTCAGAACCCAGGAC 59 16468761 16468779 ACACTCTGAGGACTTCTGG 58 NA Rattus norvegicus 81 LOC681990 ENSRNOG00000047498 ENSRNOT00000051451 3 1 1 60 1 60634246 60634269 GTGTTTCTATTGCTACTGTCTGTC 60 60634209 60634227 CTGGGACTGATGGTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009890.1 ENSRNOG00000050470 ENSRNOT00000075039 3 1 1 79 2 115159311 115160089 TTATGTGGTGACAGCAGTG 58 115159250 115159268 AGTACATGGGAGTGTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Smgc ENSRNOG00000037025 ENSRNOT00000042254 1 1 1 80 7 133069289 133071169 TTCCAGTGACTCAGCTGAC 59 133071211 133071231 TTGCTGTCAAATATTCGCTCC 59 NA Rattus norvegicus 81 Adgrf2 ENSRNOG00000025603 ENSRNOT00000033075 1 1 1 80 9 20927838 20927860 CATCTTCTCCTTACTCAATGCAC 60 20939237 20943417 GCTTCTCTTATCTTTGGATCCAG 59 NA Rattus norvegicus 81 Eral1 ENSRNOG00000010673 ENSRNOT00000014386 1 1 1 80 10 65275575 65275593 TCAAAGAAGGTGCACACCA 60 65275636 65277144 TGTGTCAAGCAGAATCACCT 60 NA Rattus norvegicus 81 Aktip ENSRNOG00000011956 ENSRNOT00000060865 3 1 1 81 19 17294340 17294358 CAGTCAACAAATGGCACCC 60 17294400 17297052 TCACTACCATTGTGAATTCTGC 59 NA Rattus norvegicus 81 Olig2 ENSRNOG00000028658 ENSRNOT00000000325 2 1 1 192 11 31389748 31390496 AATCGAATTCACATTCGGAAGG 60 31390649 31390667 GATGAGGACACGGTTCCTC 60 NA InUTR Rattus norvegicus 81 Pttg1 ENSRNOG00000003802 ENSRNOT00000005070 2 1 1 80 10 29025438 29025458 GATAAGGATAACGAAGAGCCA 57 29024552 29025397 ATCTAAGGCTTTGACACCAG 58 NA Rattus norvegicus 81 Vcpip1 ENSRNOG00000006980 ENSRNOT00000009136 1 1 1 80 5 9233991 9243433 GCAACATTAATGGGAGAAGAC 57 9243473 9243493 ATTGTAGAATACACCACCCTG 58 NA Rattus norvegicus 81 Csdc2 ENSRNOG00000005332 ENSRNOT00000007091 1 1 1 90 7 123181118 123181501 CATGTTTCTGACATCGAGGG 59 123181554 123181572 ACTTCTGGTTCTTGGGTGG 60 NA Rattus norvegicus 81 AABR07037356.1 ENSRNOG00000048990 ENSRNOT00000072722 2 1 1 81 X 19385519 19385540 GATGAAGTTGATCAGATGTTGG 58 19385428 19385480 CAGAATCTTTCTTGTATGCCAC 58 NA Rattus norvegicus 81 LOC102551105 ENSRNOG00000040057 ENSRNOT00000061598 1 1 1 80 11 29056158 29056177 CTACTACGGCAGCTACTACG 60 29056219 29056277 TAGTTACCATAGCCACAGCC 59 NA Rattus norvegicus 81 LOC100361328 ENSRNOG00000049135 ENSRNOT00000071724 2 1 1 80 9 23321125 23323280 AGGTCAGAGATCAGAAGATTCG 60 23323320 23323339 TGTGAATTGTTGTGGTGTGG 59 NA Rattus norvegicus 81 Mmrn2 ENSRNOG00000051977 ENSRNOT00000084422 3 1 1 81 16 10742546 10742564 GAAGGTGCTGATGTCTGTG 59 10742609 10742725 GTTTGCTGTGGGATGATGG 59 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599,ENSRNOT00000066302 2 2 2 80 2 24083703 24083723 AGGTGGTCATAATCCATATGC 58 24083763 24105488 CTTCTACACCATCATCCTCTC 57 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638,ENSRNOT00000061871 2 2 2 80 6 7976436 7977661 AACAACCTGTGGATAGTACCTG 60 7977702 7977720 CTGAATCTGCATCAGCCCT 60 NA Rattus norvegicus 81 Ankrd31 ENSRNOG00000025321 ENSRNOT00000032960 2 1 1 80 2 27686341 27686372 TTCCTCAGAACCTTTCCCG 59 27686415 27686434 TAGATGCTCCCTCAGATGGT 60 NA Rattus norvegicus 81 Lins ENSRNOG00000042776 ENSRNOT00000018463 3 1 1 82 1 127623686 127623705 TCATAGAGCAGGACGATGAC 59 127623750 127624687 AGTGTCCCATTCTCTGGTC 59 NA Rattus norvegicus 81 RGD1305014 ENSRNOG00000020597 ENSRNOT00000027956 3 1 1 82 1 201940901 201940924 ATGGAAGTATACTTAGGAGAGGAG 59 201940135 201940862 TCATGTTCACTGTTATCCAGG 58 NA Rattus norvegicus 81 Tnfaip8l3 ENSRNOG00000024230 ENSRNOT00000038830 2 1 1 60 8 58647823 58647841 CAGATTCTGGAGAGCAGAG 57 58604101 58647800 CTAAACACATGAGGACCTGC 59 NA DesignRelaxed Rattus norvegicus 81 Sftpa1 ENSRNOG00000011438 ENSRNOT00000047870 2 1 1 85 16 18717970 18718229 AACAATGGGAGTCCTCAGC 60 18718278 18718296 CAAAGTTGACTGACTGCCC 59 NA Rattus norvegicus 81 AABR07064538.1 ENSRNOG00000049817 ENSRNOT00000072657 3 1 1 60 6 84293592 84293611 CTGTGCTTGAAGAGAACTCG 59 84293631 84293652 AAGACCAATATGGTACGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fau ENSRNOG00000046393 ENSRNOT00000048726 1 1 1 60 6 86921786 86921805 CCAGATCAAAGCTCATGTGG 59 86921828 86921846 AAGCACGACTTGATCTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527,ENSRNOT00000017453 3 2 2 80 2 143673851 143673869 GATTTGAACCCGGAGTCAC 59 143673913 143674020 AAAGCGTCTCATTGACTCC 58 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 1 2 2 80 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122550 5122568 CAACTCTTCCATGGTGGGA 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 3 4 4 83 10 65307779 65307798 GACACCAAGATTGCTGACTC 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 Hexb ENSRNOG00000025274 ENSRNOT00000048554 1 1 1 80 2 27999734 27999755 GCTTCTGGTCTTCATTAACCTC 59 27997321 27999699 ACAAGTAGAGAATAGGACTCATCTG 60 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 3 2 3 80 10 87345943 87345965 GACAGAAATATGAAATCCTGGCC 60 87345693 87345905 TCTCCAGAGTTTGAGTCTGTC 59 NA Rattus norvegicus 81 AABR07033579.2 ENSRNOG00000061897 ENSRNOT00000061600 3 1 1 91 11 28945593 28945611 AACTACTATGGCGGCAGAG 59 28960842 28960860 TAGTAGGAGCCATAGCCAC 58 NA DesignNoJunction Rattus norvegicus 81 Lurap1 ENSRNOG00000023459 ENSRNOT00000035348 2 1 1 197 5 135001566 135001584 GACTTACGAGACGTGGAGG 60 134993071 134993090 AATCTTCACATCGATGGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 1 3 3 80 3 22884843 22887244 ACTACTCTGAGAAGCTTCGG 59 22887285 22887305 GCACATACTCAATGTCAGGTC 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 3 2 2 61 7 15071213 15072638 ACTAAGTAGTCAGTTGTTGGAG 58 15071173 15071191 TTTCTGCACACTGATGACC 58 NA DesignNoJunction Rattus norvegicus 81 Ilvbl ENSRNOG00000028512 ENSRNOT00000039852 3 1 1 80 7 14045158 14045176 TTGGACCCAGATTTCTCGG 59 14044999 14045116 TTGTGATAATCGGTGTAAGCC 59 NA Rattus norvegicus 81 Sdhaf4 ENSRNOG00000028087 ENSRNOT00000035033 2 1 1 80 9 30243711 30249317 CCACTGCAGAAGTTTCCAG 59 30243649 30243667 GTATCGTGTAGGCTCTGGG 59 NA Rattus norvegicus 81 Prok1 ENSRNOG00000018201 ENSRNOT00000024519 1 1 1 129 2 209990857 209990875 GAACGAGATGTCCAGTGTG 58 209988102 209990764 AGAAAGGGATCTTGTGGCT 59 NA Rattus norvegicus 81 Atp6v1e2 ENSRNOG00000015566 ENSRNOT00000020845 3 1 1 60 6 10512027 10512047 AATCTCATCTTGGAACTGCTC 58 10511987 10512006 CATCCGACACGATTCTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390,ENSRNOT00000080945 2 2 2 80 X 156919289 156919446 GTCTATAGAGAAGGTGAACAAGG 58 156919484 156919504 TCACTTGGTTGCACATTACTC 59 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 2 2 2 93 8 117318875 117318893 TGTCCAGTCACAACCAGTG 60 117318950 117324009 GTACCTGCACCTGTACCTG 60 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 1 2 2 80 3 117376017 117379844 CTCTGAATATTAAAGAGGATCCCG 59 117375960 117375981 GTGATCCTTGAAATGATGTTCC 58 NA Rattus norvegicus 81 Sh2d1b2 ENSRNOG00000038432 ENSRNOT00000058547 1 1 1 90 13 88572824 88575398 TTATGGAGGCTAAGCCCAG 59 88575452 88575470 ACCATTCCTTGACCTGGTG 60 NA Rattus norvegicus 81 Hamp ENSRNOG00000021029 ENSRNOT00000028545 2 1 1 93 1 89369920 89369938 ACTAAGCACTCGGATCCAG 59 89368348 89369863 AGTCTGTCTCGTCTGTTGC 60 NA Rattus norvegicus 81 Tjp2 ENSRNOG00000015030 ENSRNOT00000065921 2 1 1 80 1 241964361 241964382 GTCCTCTACCTGTTAGAAATCC 58 241963475 241964322 GATGTCTCTATACACGTCTGC 58 NA Rattus norvegicus 81 Slc16a4 ENSRNOG00000018131 ENSRNOT00000024455 2 1 1 80 2 210058633 210059560 AATACTGCCAGTATTGGTTGAC 59 210059601 210059619 ATCCCAGCAAAGAAACTGG 58 NA Rattus norvegicus 81 Rnf19a ENSRNOG00000009658 ENSRNOT00000013344 2 1 1 80 7 75071738 75071756 GGATCGCTCTCATAGCTGG 60 75066419 75071695 GATTATGAATCTTGCGGCCC 60 NA Rattus norvegicus 81 Kap ENSRNOG00000005858 ENSRNOT00000007806 3 1 1 100 4 167551951 167552099 GCATACAGATTTCTGAGCTCTC 59 167550150 167550169 TAATGGAAACTCCACTGTGC 58 NA Rattus norvegicus 81 Eri3 ENSRNOG00000019381 ENSRNOT00000072492 1 1 1 80 5 136437876 136437899 GAGTCTACCTTTCACATGTATGTC 59 136437937 136444201 AATGATCCCAGTGAGCTCTG 60 NA Rattus norvegicus 81 Sh3bp5 ENSRNOG00000052391 ENSRNOT00000082172 3 1 1 81 16 7475262 7475282 ATGATGTTCCCAATACTGGGT 59 7474754 7475219 CTCTGTCTCCTCGTTCCAC 60 NA Rattus norvegicus 81 Ankmy1 ENSRNOG00000048567 ENSRNOT00000071359 2 1 1 80 9 100055169 100055188 GTGCTTCCTCCAGTATTACC 58 100054283 100055128 GGTTTAGGAGATTCCTGAAGC 59 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000086766 3 1 2 181 1 264774260 264774278 ACAACTGCAAGTGTTCCAG 59 264775290 264775501 CTGTAGCTCCTGATTTCTGAC 58 NA Rattus norvegicus 81 Myh9 ENSRNOG00000004860 ENSRNOT00000007398 1 1 1 80 7 118762372 118762390 CTGAACGACAACATTGCCA 59 118760618 118762329 GATTCGATCCACATCCTTCC 58 NA Rattus norvegicus 81 Myh9 ENSRNOG00000004860 ENSRNOT00000007398 3 1 1 80 7 118762373 118762391 TCTGAACGACAACATTGCC 59 118760619 118762330 ATTCGATCCACATCCTTCCA 59 NA Rattus norvegicus 81 Blvra ENSRNOG00000011778 ENSRNOT00000015843 1 1 1 80 3 119567321 119572455 ACAGAAAGGGAGAGTCCTG 58 119572498 119572517 CCCAACACTTCTCTTCTCAG 58 NA Rattus norvegicus 81 Il1b ENSRNOG00000004649 ENSRNOT00000006308 2 1 1 81 3 121879040 121879579 TTCATCTTTGAAGAAGAGCCC 58 121878979 121878999 GCTGTCTAATGGGAACATCAC 59 NA Rattus norvegicus 81 Srsf7 ENSRNOG00000027360 ENSRNOT00000038448 2 1 1 80 6 2883611 2883630 TAGATCACATTCCCGATCCA 58 2883469 2883568 GATGCTGATCTTGACCTCC 58 NA Rattus norvegicus 81 Npl ENSRNOG00000002775 ENSRNOT00000003713 2 1 1 80 13 70977756 70977777 TTCCCTAAGAAGAAACTCCAGG 60 70967742 70977718 GACAGGAAAGTTGATTTCTCCA 59 NA Rattus norvegicus 81 AABR07028989.1 ENSRNOG00000050441 ENSRNOT00000040132 2 1 1 80 10 1642971 1645970 TTGTCAGCTGAGTCAACGA 59 1653865 1653884 GAACTGAGCTCATCTTCCAC 58 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 1 2 2 80 5 135445036 135445054 GAGATACAGATGCCCAGAC 57 135445098 135445452 AACTGGACATCATTGGTGG 58 NA Rattus norvegicus 81 Rnf152 ENSRNOG00000014859 ENSRNOT00000019921 1 1 1 193 13 25191129 25260878 CAGATTCAGAAATTAGCACGTG 58 25190957 25190976 ATATCTGACATTCCAGCAGG 57 NA InUTR Rattus norvegicus 81 Sorbs2 ENSRNOG00000013391 ENSRNOT00000029628 1 1 1 80 16 49707682 49707704 GAGAGTTCAAAGTTCTCCAAACC 60 49703576 49703881 CCATTGTAAGATCTCCAAGCTG 59 NA Rattus norvegicus 81 Msh2 ENSRNOG00000015796 ENSRNOT00000021538 3 1 1 80 6 11269092 11270746 GGTATTTGGCATATAAGGCTTCTC 60 11269035 11269056 AAGTGGACATGTCATTGTTACC 59 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 1 1 1 74 10 17375115 17389908 CATAACACTACCACACGGTG 59 17389945 17389963 CAATAGACTGGCAGCTGGT 60 NA DesignNoJunction Rattus norvegicus 81 AABR07002247.1 ENSRNOG00000050476 ENSRNOT00000073121 3 1 1 80 1 69692421 69692518 TTTAGCTGGAGTACCAGCC 59 69692561 69692580 GAACCATTTCTCACACTGGC 60 NA Rattus norvegicus 81 Flywch1 ENSRNOG00000004333 ENSRNOT00000005879 3 1 1 85 10 13097336 13098374 CAGGAGTGGTACGGTATCG 59 13097269 13097288 CTTGTAGAGGAAGGACTGGT 59 NA Rattus norvegicus 81 Ripply3 ENSRNOG00000001684 ENSRNOT00000002289 3 1 1 91 11 34558719 34558737 TGACCAGAACTGAACGTCC 60 34562959 34564676 CAAGTAAAGTCTGACAGGATGC 59 NA Rattus norvegicus 81 Tubg2 ENSRNOG00000006494 ENSRNOT00000008576 1 1 1 80 10 89070597 89070892 AGTCTAGAGGGATTTGTGCTG 60 89070933 89070952 CAGTCGCTCTAAGAGGTAGG 59 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 3 2 2 80 4 66418801 66420760 CCAGACACATTCACCATCTC 58 66420803 66420821 CGTCAGACACTCTGTTGAC 58 NA Rattus norvegicus 81 Cyb5r4 ENSRNOG00000010024 ENSRNOT00000013908 1 1 1 80 8 94710589 94710610 GGGTCAATTATGAATCCATGCT 59 94710649 94718129 CATGACAGTCTTTCGGAACAG 59 NA Rattus norvegicus 81 Cldn14 ENSRNOG00000001691 ENSRNOT00000002297 2 1 1 133 11 34133591 34142366 AGCTGTTCTGTATGCCTCC 60 34133476 34133495 CTAAGCAGGAAGCCTAGGAG 59 NA InUTR Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 3 2 2 80 2 257660771 257660789 TGGATGAAGATGATGAGCG 57 257660831 257664999 GAATGCTTTCTTCATCTGAGG 57 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 1 2 2 80 12 46989766 46989784 TTCTCAAAGGAGACGGCTC 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Ddx43 ENSRNOG00000050868 ENSRNOT00000072933 3 1 1 80 8 85773784 85773806 GACCTTCCTAGAGAATATGTCAC 58 85773843 85774028 CTTGATAAGTGATCAGCAACAG 58 NA Rattus norvegicus 81 Dzank1 ENSRNOG00000007440 ENSRNOT00000029701 2 1 1 80 3 138635377 138635395 CACCTCAGGTCCTATGCTC 59 138634176 138635333 AGCAGAGATGAGCTTTCCC 60 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 1 3 3 80 2 27025436 27025456 GCTATCATGGGAGTTTCTCCT 59 27025497 27028430 CTGAGGAATGGTTTGCACTG 60 NA Rattus norvegicus 81 Coq2 ENSRNOG00000002194 ENSRNOT00000002987 1 1 1 80 14 10591643 10591661 AGTCCTTCGTCTTCCTTGG 59 10591699 10593318 CCATTGCTATACTGTAGTAGTTCAG 59 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000009082,ENSRNOT00000044363 2 2 2 80 10 57607924 57607945 GCAAGAAGTAATGGAGGAAGAG 59 57607986 57609260 GGCAATTCCAACTGAAGCA 59 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000009082,ENSRNOT00000044363 3 2 2 80 10 57607925 57607947 CAAGAAGTAATGGAGGAAGAGTG 59 57607987 57609261 TGGCAATTCCAACTGAAGC 59 NA Rattus norvegicus 81 Mterfd3 ENSRNOG00000006978 ENSRNOT00000009135 3 1 1 91 7 24640130 24646897 GACTGTAAGGCACAGTGTG 59 24646952 24646970 GGTATCCTGTCAGCAACCT 59 NA InUTR Rattus norvegicus 81 Utp15 ENSRNOG00000016591 ENSRNOT00000022259 3 1 1 80 2 28365843 28365946 CAGCTTCTTCAAGGATCCAC 59 28365782 28365800 ATGCTGTGTCCTTAAAGCG 59 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818,ENSRNOT00000039999 2 3 3 80 11 35647400 35654704 CTAATCCAGGTAGTGGCCAG 60 35647339 35647357 TGATGCAGTTGGAGTTGGA 59 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 1 2 2 80 1 205911975 205922912 CGGTGTCATTTACACAGGC 59 205922954 205922974 TTCAGTCGAAATCTGTACAGC 59 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681,ENSRNOT00000086340 3 2 2 96 9 113313400 113313419 TTCAAAGTGAAGACCACAGC 59 113312654 113313342 GCAGCATTACTGAGACAGTC 59 NA Rattus norvegicus 81 Tmem174 ENSRNOG00000015472 ENSRNOT00000020879 2 1 1 84 2 28749629 28749647 AGACAATGCTGCGTTTGTG 60 28749383 28749401 CTGGTCTGCATCAGAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Slc44a2 ENSRNOG00000031824 ENSRNOT00000049973 3 1 1 80 8 22380171 22380372 CTTATGAGAAATATCATCAGGGTGG 59 22380409 22380428 CACAATCAGAAGTTTGCCCA 59 NA Rattus norvegicus 81 Ccdc106 ENSRNOG00000015997 ENSRNOT00000021613 2 1 1 80 1 72334533 72335817 TAACTTCCCACTTAACAGACAG 58 72334474 72334493 TCACCAAATGTAGTCAGTCC 57 NA Rattus norvegicus 81 Trank1 ENSRNOG00000021091 ENSRNOT00000028633 3 1 1 80 8 119601300 119602858 TCCAATCGAGGGAAAGTCAG 60 119602898 119602919 CATCTCTGTAGTTGATGTGCTC 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000077871 1 1 3 83 12 47243902 47247342 CATCTCAGACCAAGACCAGG 60 47247388 47247406 GTGAACTGATAGCGGACGA 60 NA Rattus norvegicus 81 Ankrd12 ENSRNOG00000012733 ENSRNOT00000017613 3 1 1 80 9 113677115 113678750 GACAAGCTAAAGACCTGTCTG 59 113678792 113678810 CTGCCACTCTAGTCTCTGG 59 NA Rattus norvegicus 81 Oasl ENSRNOG00000001187 ENSRNOT00000001570 1 1 1 80 12 47445987 47446787 GGAGAAAGGCCCATTATCC 58 47445925 47445944 CTGAGCAACTATATCCCACC 58 NA Rattus norvegicus 81 Cryzl1 ENSRNOG00000028014 ENSRNOT00000033745 1 1 1 80 11 31852131 31852152 CATAAGCATGACATCATCACAC 58 31851033 31852090 TGGAGGATCCAACTGAAGG 59 NA Rattus norvegicus 81 Ooep ENSRNOG00000025957 ENSRNOT00000071049 3 1 1 85 8 85720337 85720553 AAGAATCATTGGCTCAGACCA 60 85720272 85720290 CAGAGTTGGCCAAGTTCAC 59 NA Rattus norvegicus 81 Saraf ENSRNOG00000012329 ENSRNOT00000016792 1 1 1 80 16 61740603 61740621 ACTCACAGCACTCTCAGAG 59 61738286 61740559 TCTGTGGTCCTGTGAAGTC 59 NA Rattus norvegicus 81 Naip6 ENSRNOG00000033693 ENSRNOT00000072926 2 1 1 80 2 30386843 30390566 AGCCAGATTCCAGATCAGC 60 30386781 30386800 TGTGCCATCTAGTCTCACAG 59 NA Rattus norvegicus 81 Tnfrsf17 ENSRNOG00000021987 ENSRNOT00000035886 3 1 1 83 10 4256796 4257625 TGTGATCCAAGCATGACCA 59 4256731 4256749 CAAACAGACGACCAAGGTC 59 NA Rattus norvegicus 81 Gpr182 ENSRNOG00000004311 ENSRNOT00000005693 1 1 1 133 7 71046628 71046646 CATTACCAAAGAGGGCAGC 59 71046064 71046531 CATAGTGAGCTTAGCTGGC 58 NA InUTR Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 1 2 2 83 12 44968639 44968657 CACATTCACAGGGTGACTG 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Krt9 ENSRNOG00000014370 ENSRNOT00000019330 2 1 1 80 10 88103087 88103105 GGAAGTGGCAAAGGAAGAC 59 88102929 88103044 CCCACTTTCTCCTTCATAGC 58 NA Rattus norvegicus 81 Kcna10 ENSRNOG00000050416 ENSRNOT00000074358 2 1 1 60 2 209932322 209932340 GTCCTCACTATTGCCCTCC 60 209932359 209932382 GGTGGTAGAAGTAGTTGAAATTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680236 ENSRNOG00000048486 ENSRNOT00000071886 1 1 1 80 X 22791132 22791150 GAGGCAAAGAGGTTCTGTG 59 22791193 22791760 CTCAAATGAGACAGGATGCT 58 NA Rattus norvegicus 81 Colq ENSRNOG00000019615 ENSRNOT00000026550 3 1 1 80 16 7633474 7633497 GATCTCTGTACTTCAAAGATAGCC 59 7633052 7633072 CTGCTTTATGGTGACCCAC 59 NA Rattus norvegicus 81 Slc13a5 ENSRNOG00000014870 ENSRNOT00000020043 1 1 1 80 10 58815531 58817589 CCAAAGGATGTGAGACTTCAG 59 58815471 58815491 TAATAGCAGGTCTCACTGAGC 59 NA Rattus norvegicus 81 Inpp5j ENSRNOG00000019361 ENSRNOT00000026293 1 1 1 80 14 83738733 83738754 TGTCACATCTCTTCTACACCTG 60 83738555 83738692 TTGACTTCTTGCAACCCGA 60 NA Rattus norvegicus 81 Ubl5 ENSRNOG00000020442 ENSRNOT00000027749 2 1 1 80 8 21663705 21663870 TTAAGTGCAACACCGATGAC 59 21663913 21663931 CGATCTTATTCCAGCGGGT 60 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 3 2 2 81 13 84098997 84099015 CTACCCTCACAGTCAACCC 59 84087759 84098952 GTGGAGTCTGTAGTGCCTG 60 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256,ENSRNOT00000042227 2 2 2 80 9 45203499 45203517 AAACCAGAGTCAGCCAGAG 59 45067901 45203458 TTCTCCAGATCTATTCTCCTCG 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161,ENSRNOT00000077908,ENSRNOT00000090143 3 4 4 81 1 201323335 201323353 GAGAAGTCTCTGGCTGACC 60 201323398 201323615 GCACCTCCTCATTCTTTCG 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295,ENSRNOT00000084429 3 2 2 80 8 116755629 116755651 GTGATGTTCTCAGACATTGAAGG 60 116755690 116755802 GGATCCATCTTTCTGCACAC 59 NA Rattus norvegicus 81 Ucp1 ENSRNOG00000003580 ENSRNOT00000004900 1 1 1 80 19 24460933 24461042 CAACACTGTGGAAAGGGAC 59 24461085 24461104 TGAGGTCATATGTCACCAGC 60 NA Rattus norvegicus 81 LOC499584 ENSRNOG00000033028 ENSRNOT00000040463 2 1 1 80 2 110307421 110329167 AAACATGACAAGGAGCTTCAG 59 110329209 110329227 CACCTCAGTGAGTTGTGAC 58 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 1 2 2 80 2 206591828 206591847 TCAGAAAGGATCGATTGACC 57 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 Tanc1 ENSRNOG00000025394 ENSRNOT00000038983 2 1 1 80 3 45858042 45858060 GGTCCGGTCCCTTATTCTC 59 45858103 45863250 TTTGGTAGAACTTGTCGCTG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 2 3 3 81 8 78371993 78372012 GAGTTGAGCAGCAACTTCAC 60 78371188 78371950 TCTTCCATTCGAGACTGCTC 60 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985,ENSRNOT00000074889 1 3 3 80 14 5942817 5942835 CTCTACGTGGACATGAGGG 59 5942877 5943798 GAAGACTTCACTTGCCTTCAC 60 NA Rattus norvegicus 81 AABR07055875.1 ENSRNOG00000050603 ENSRNOT00000044642 1 1 1 89 7 14643940 14643961 GGTTAGAATAGTTGTGGAACCT 58 14644011 14644223 TGTGGCCATTCATTCACAG 59 NA Rattus norvegicus 81 Olr1264 ENSRNOG00000047687 ENSRNOT00000073036 2 1 1 60 2 35285965 35285986 AATATACAGAGACCCATTTCCC 58 35286006 35286025 ACCGTGATAACATAGATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 2 2 2 82 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638387 93638406 GCTCACACTTAGCTGTAGGT 60 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 3 2 2 87 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638382 93638400 TTTGGGCTCACACTTAGCT 59 NA Rattus norvegicus 81 Krt32 ENSRNOG00000013611 ENSRNOT00000091394 2 1 1 80 10 87997286 87997388 GGTTCAATATGCAGATGGAGG 59 87997226 87997247 TGATGTCTGACTGGTAACTCTG 60 NA Rattus norvegicus 81 LOC100910872 ENSRNOG00000054063 ENSRNOT00000090123 1 1 1 127 8 116336622 116338469 CTTGAACATGAAGTGACACAG 58 116338558 116338576 GTACTCAGGATCAGCTCCA 58 NA InUTR Rattus norvegicus 81 Atp2a1 ENSRNOG00000047124 ENSRNOT00000074778 2 1 1 86 1 197857233 197857251 GAACATCTGGCTTCTCGGT 60 197857012 197857183 TTGAAGATCATCGGCAGGG 60 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 1 4 4 80 3 152584120 152584140 GCCCAAGATTCTCAAGATCTC 59 152584181 152586768 CTCTCGAACTGCTCATACTC 58 NA Rattus norvegicus 81 Nfatc2 ENSRNOG00000012175 ENSRNOT00000065615 1 1 1 106 3 165272795 165288261 AAGACTACAGATGGGCAGC 60 165272258 165272276 TGCTTGTTCCGATACTCGG 60 NA Rattus norvegicus 81 Lyg1 ENSRNOG00000047233 ENSRNOT00000074343 1 1 1 80 9 44608862 44609552 TGAGTTACTGTGGAGTCCG 59 44608800 44608819 TCATGGTGGGTTGGTATCTC 59 NA Rattus norvegicus 81 Htr1a ENSRNOG00000010254 ENSRNOT00000013618 2 1 1 60 2 36247207 36247226 GGCTACACCATCTACTCCAC 60 36247249 36247267 GAACCAGCATGAGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahdc1 ENSRNOG00000042855 ENSRNOT00000067939 3 1 1 81 5 151266402 151266420 CATTTACCGTCACCTCCCT 59 151266464 151276533 ATTGGTCTTCTGAAAGCCAG 58 NA InUTR Rattus norvegicus 81 Rbm43 ENSRNOG00000004673 ENSRNOT00000006172 3 1 1 123 3 37437396 37440482 AAAGAAAGTTGCACAGACCA 58 37436587 37436606 AGACAAATCAAGAATGGCCA 58 NA Rattus norvegicus 81 Sh2d7 ENSRNOG00000023870 ENSRNOT00000029413 3 1 1 93 8 59117398 59119102 GTACAGAGGTACCCACTAGAG 59 59119156 59119175 GAGTAGACGATACCACTGGG 59 NA Rattus norvegicus 81 Ccdc18 ENSRNOG00000024545 ENSRNOT00000036442 2 1 1 80 14 2582951 2583662 CTGAATTGAGGATTAAGCTTGC 58 2582892 2582911 GAGACAACTGGTTCACAGTC 59 NA Rattus norvegicus 81 Hykk ENSRNOG00000013419 ENSRNOT00000018003 2 1 1 81 8 59511150 59511168 CTGGATTTCCAACAGCCTC 59 59511210 59511748 ATTTCAGATCCACTGTCAATGG 59 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 3 2 2 80 2 149006669 149010016 CATTTACAGCGTTTCCAAGG 58 149006608 149006628 CTCAAATGTTCTGGAGAGGAC 59 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000008560,ENSRNOT00000090673 3 2 2 80 7 14357565 14357838 GGGACAAATAGAGGCTACGA 59 14357504 14357525 CATACCATACCCATAGTTGGTG 58 NA Rattus norvegicus 81 Lrrc8c ENSRNOG00000002122 ENSRNOT00000002896 1 1 1 81 14 5290025 5315876 GGATGTACTTTACAAGTCATGC 58 5289965 5289983 AGAGGGAAGAGTGGTTCTG 58 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095,ENSRNOT00000042077 1 2 2 80 19 21607615 21608082 GGGCTCTGGTAAATCATCAC 59 21608124 21608143 ACCTCGTCAATGAAGATGGT 59 NA Rattus norvegicus 81 Ppy ENSRNOG00000020874 ENSRNOT00000028318 2 1 1 84 10 90042152 90042172 CTATGCTACGCATGAACAGAG 59 90041904 90042106 CTTCCCATACCTAGGCCTG 59 NA Rattus norvegicus 81 AABR07055943.1 ENSRNOG00000000958 ENSRNOT00000001268 2 1 1 96 7 16157074 16157093 ATCGAGGCCATTATATTGCA 57 16156995 16157013 TCTTCAATAGCTTGTGCGT 58 NA DesignNoJunction Rattus norvegicus 81 Mnda ENSRNOG00000003486 ENSRNOT00000036040 2 1 1 80 13 92079180 92082669 TTGGCTAAGTGTTCAATGGAG 59 92079120 92079138 TTCTGTTTGGAGAACAGCG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076582 3 1 3 60 10 87950085 87950103 AAGTCTCCATTTCCTGCCT 59 87950043 87950061 AGTTGTCTCCTTGCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc13 ENSRNOG00000012124 ENSRNOT00000016439 1 1 1 80 2 34239116 34244487 TATTGGTGAAGGCGGATCTC 60 34239055 34239074 GTTTAAGTTCAGCCACAGCA 59 NA Rattus norvegicus 81 Rnf113a1 ENSRNOG00000034040 ENSRNOT00000051474 1 1 1 60 X 124517226 124517247 CTAAACAGAAGACAAACTACGG 57 124517267 124517286 AGACCCTCAGGTTCATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 3 1 1 61 3 143122554 143122575 CATTGACAATTGTCCATTGCAG 59 143122596 143123368 CAATGTAAGTGCAGCGTACC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07042359.1 ENSRNOG00000051885 ENSRNOT00000089027 3 1 1 60 X 153491135 153491154 GAATGGTGACAACATGCTGG 60 153491094 153491113 GACTTTCCATCCCTTGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805,ENSRNOT00000078514 1 3 3 80 1 217604917 217604937 CACCTACGATGGGTATGAGAG 60 217604063 217604875 ATTTCATCATCGCCAGCAG 59 NA Rattus norvegicus 81 Rpl5 ENSRNOG00000023529 ENSRNOT00000030428 1 1 1 80 14 2861752 2864007 GACTCCAGACATGATGGAGG 60 2861691 2861710 TTGGGCTTCTTCTCGTAGAC 60 NA Rattus norvegicus 81 Olr710 ENSRNOG00000059642 ENSRNOT00000081552 1 1 1 60 3 78544530 78544551 CACAGTAGTTGCCAATAATGGA 59 78544491 78544514 GGAGAATAGAAGAAGGACAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000064840,ENSRNOT00000065181,ENSRNOT00000087723 3 3 3 80 10 59550782 59555390 ATCAGCTGAGGAACTTCCTG 60 59555433 59555451 AGCGTGACTCAAAGACCTC 60 NA Rattus norvegicus 81 Sgtb ENSRNOG00000011937 ENSRNOT00000016129 1 1 1 80 2 34199595 34208887 GTTTATTATTGTAACAGGGCGG 58 34208928 34208946 GATGGCTTTCTCACAGTCC 58 NA Rattus norvegicus 81 Nfe2 ENSRNOG00000036837 ENSRNOT00000055281 2 1 1 87 7 144875395 144875414 ATTACCACAGCTGCCTACTG 60 144873968 144875346 ATTTAGACCCTGCAGCTCAG 60 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 3 1 2 86 13 36147917 36150855 CAAGCTGAAAGGAACTTCCA 58 36141968 36141986 TTAGAGCTGGAGTTGCTGG 59 NA Rattus norvegicus 81 AABR07048397.1 ENSRNOG00000038905 ENSRNOT00000022054 1 1 1 80 5 76749221 76749241 GACCTACTCGTGTGAAGAGG 60 76749284 76749302 CTCTTTGGTTCCACCACAC 59 NA Rattus norvegicus 81 Gstm1 ENSRNOG00000029726 ENSRNOT00000047139 3 1 1 80 2 210807886 210807904 GACATTGTGGAGAACCAGG 58 210806656 210807843 CTTCTGCTTCTCAAAGTCGG 59 NA Rattus norvegicus 81 Gns ENSRNOG00000046159 ENSRNOT00000006566 1 1 1 80 7 65646431 65646452 TGGTGGAATATCAAGGAGAAGG 60 65646491 65647167 GGAAACATTGAGACACTCCAG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649,ENSRNOT00000016596 1 2 2 80 2 34270262 34270285 GGATATGACTATTCTCTTGTCCCA 60 34270324 34273348 ACTCTGCAATCATCCTGCT 59 NA Rattus norvegicus 81 LOC100909882 ENSRNOG00000048892 ENSRNOT00000074742 1 1 1 60 2 46211299 46211317 CCAGCACTTACAACAACGA 58 46211340 46211359 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631,ENSRNOT00000023610 1 2 2 80 1 211557903 211557921 CACCAAATCTCAAGGCAGC 60 211557963 211559536 AGGTAGACCTCTTTCTGAGTG 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445,ENSRNOT00000081780,ENSRNOT00000042331 3 3 3 80 12 43434425 43434443 CAGATGACATCTCTGCCCT 59 43431928 43434385 GATACTCCAATCTTTCAGTTCCC 59 NA Rattus norvegicus 81 Fadd ENSRNOG00000047035 ENSRNOT00000075089 1 1 1 216 1 217748431 217748449 GTAAACGAAAGCTGGAGCG 60 217746543 217746561 ACAATGTCAAATGCCACCC 59 NA DesignNoJunction Rattus norvegicus 81 Scoc ENSRNOG00000003853 ENSRNOT00000005124 1 1 1 80 19 24587775 24587796 CATTAAAGAGTTTGCATTCGGG 59 24587395 24587734 TTTCAGCATCAACTGCGTC 59 NA Rattus norvegicus 81 Nkx2-4 ENSRNOG00000012647 ENSRNOT00000016915 3 1 1 195 3 141304612 141305035 GCTACTCGTCAATCTCCAG 58 141304435 141304453 TACTTCTGCTGCTTGAAGC 58 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000005953 ENSRNOT00000054886 2 1 1 80 1 211955316 211956084 CAGACACCAGAAATCAGATGC 59 211955256 211955278 GAGATGCTTTCCTTTCCTTATCC 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367,ENSRNOT00000003072,ENSRNOT00000033489 3 3 3 80 14 10870028 10871000 CCACAGTAACAGGATGCAC 59 10871043 10871062 TCATCCTCAGAAGCAAGGAC 60 NA Rattus norvegicus 81 Plac1 ENSRNOG00000047095 ENSRNOT00000074170 1 1 1 60 X 158569238 158569258 TCCTCCCAATCATATTCACCC 59 158569280 158569298 GCCACATTCAGTAACTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurog2 ENSRNOG00000010972 ENSRNOT00000014570 3 1 1 82 2 231963194 231963212 CAGCTGCACTTTATCACCC 59 231963258 231963276 GTGCATAACGGTGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000065115,ENSRNOT00000084198 3 2 2 94 2 178117635 178169838 ATGGTCATCACAGGTCCAG 59 178169896 178169914 TTCTCTAATGCTGGACGCT 59 NA Rattus norvegicus 81 Erbb3 ENSRNOG00000004964 ENSRNOT00000006796 3 1 1 80 7 3000295 3000313 TAAGATACCCGCACTGGAC 59 2999832 3000254 GACTGGATGTTTAGGTAACCTG 59 NA Rattus norvegicus 81 Strip1 ENSRNOG00000018293 ENSRNOT00000025036 3 1 1 80 2 210398166 210398186 TCATCGTTAAGGCCATTTCTG 59 210397911 210398127 TGTACTCAAACTGGTAGATGTG 58 NA Rattus norvegicus 81 Vom2r44 ENSRNOG00000010268 ENSRNOT00000013777 2 1 1 80 2 154605257 154615343 TGTGAAGGGTTTAACTTTCGG 59 154615382 154615403 GTCTTTCCTCGCATTAATCTCC 59 NA Rattus norvegicus 81 Iscu ENSRNOG00000000701 ENSRNOT00000000890 1 1 1 121 12 48625882 48627154 TACCACAAGAAGGTTGTGGA 59 48625780 48625798 AGTTTCATGACGTCACCAC 58 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 1 2 2 80 10 59753210 59753322 CTACATCCAGGAGGAGTTTCTC 60 59753151 59753169 TGTAAGCTGAAGAAGGCGT 59 NA Rattus norvegicus 81 Tubgcp2 ENSRNOG00000018137 ENSRNOT00000024573 2 1 1 80 1 212338820 212341817 ACGACCTCAAGATTGACCTG 60 212338759 212338779 TCTCTTGCTTGGTCTCTATGG 59 NA Rattus norvegicus 81 Tubgcp2 ENSRNOG00000018137 ENSRNOT00000024573 3 1 1 80 1 212343204 212343897 TTCACGACCCATACAGTGAG 60 212343143 212343163 ACTTGTCATTGTAGTCCTCCT 59 NA Rattus norvegicus 81 Nktr ENSRNOG00000049128 ENSRNOT00000071152 2 1 1 80 8 130382126 130382145 AGAGACGGAAAGAGATGAGC 59 130382187 130383114 CACTCCTCTCAGAGTAACCC 59 NA Rattus norvegicus 81 Col3a1 ENSRNOG00000003357 ENSRNOT00000004956 3 1 1 80 9 52045125 52045433 GAAATGATGGTGCACCTGG 59 52045585 52045603 CATTCTTTCCAGCAGGACC 59 NA Rattus norvegicus 81 Arhgef6 ENSRNOG00000000869 ENSRNOT00000001158 3 1 1 80 X 159801794 159839306 TTCAAGTGGAAGTGTTTGAGC 59 159801734 159801755 TGACAGCTAGAAGGGTATTCAG 59 NA Rattus norvegicus 81 AABR07054708.1 ENSRNOG00000050969 ENSRNOT00000075542 1 1 1 102 3 167270461 167270479 TTCACTCAGGAAGAGTGGG 59 167270062 167270398 AAATGTATCCTATAGCGCTGAG 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979,ENSRNOT00000001135,ENSRNOT00000001138 3 3 3 85 20 5161543 5162085 GCCATCTTGAGAATGATTCTG 57 5161478 5161497 GAAATAGCTTTCTTGGCTGG 57 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 1 2 2 80 12 51870028 51876561 ATGGATTCTCGAATCTAGACTG 57 51869969 51869989 GTCCATCGAAGCAATATTCAC 58 NA Rattus norvegicus 81 Tmem45b ENSRNOG00000008515 ENSRNOT00000011329 3 1 1 80 8 32566368 32567353 TCCCTTGTTTACTGCTTTCTG 59 32566308 32566326 GTCAGACTTCAGCTTCTGG 58 NA Rattus norvegicus 81 AABR07054718.1 ENSRNOG00000050384 ENSRNOT00000072043 3 1 1 81 3 167579800 167579820 GATCCTGCTCAGAAGAATCTC 58 167579860 167580084 CTTCCCAAATGTAGCCTATAGC 59 NA Rattus norvegicus 81 Vnn3 ENSRNOG00000039865 ENSRNOT00000021896 3 1 1 80 1 22656763 22660832 GTAGAGACCCTAAGAGGTTTGG 60 22656704 22656728 CAATATAGATAGAGTTCTCCTTGGC 59 NA Rattus norvegicus 81 Ftl1l1 ENSRNOG00000034150 ENSRNOT00000049856 2 1 1 60 X 139475808 139475827 GTGACTTCTTGGAAAGCCAC 60 139475767 139475786 TTGCCCATCTTCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc50 ENSRNOG00000018128 ENSRNOT00000024582 2 1 1 80 9 44031562 44032596 CTGGGATACAGTGCATTGC 59 44032639 44032658 TCCGTACAGCACAATGAGAG 60 NA Rattus norvegicus 81 Prps2 ENSRNOG00000004160 ENSRNOT00000005615 2 1 1 80 X 28465524 28467860 GTCATGCTGCAGATAAGTTACTC 60 28467900 28467918 CTGGCCCAGAGAAGATTCC 60 NA Rattus norvegicus 81 Sort1 ENSRNOG00000031814 ENSRNOT00000049127 3 1 1 80 2 211104749 211104769 GTCCTGACTACTTTCCAAGTG 58 211104810 211117398 CTTTCCGTAATCCTCACTGC 59 NA Rattus norvegicus 81 Sybu ENSRNOG00000004200 ENSRNOT00000005584 1 1 1 80 7 83606198 83606217 CCTTCTTCTCCAAGTAGCAG 58 83604126 83606155 ATATCGTCCAGACCTCCTC 58 NA Rattus norvegicus 81 Lrig3 ENSRNOG00000007654 ENSRNOT00000032786 1 1 1 80 7 69258078 69258811 CATTACCAACACAGATGAGACC 59 69258852 69258870 TGCCTGTCAGCTAATGTCC 60 NA Rattus norvegicus 81 Arse ENSRNOG00000028350 ENSRNOT00000033080 3 1 1 89 2 122881254 122881272 GTGACATCGCCTGAATTCC 59 122881325 122882003 CAGTATCTGGCCCACTACC 59 NA Rattus norvegicus 81 Rn60_1_1736.2 ENSRNOG00000051224 ENSRNOT00000077009 2 1 1 60 1 167355701 167355719 AAGTTGGACTAAGCGACCT 59 167355659 167355678 GCATGATTGGTATCACTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apex2 ENSRNOG00000000166 ENSRNOT00000068703 3 1 1 80 X 23148695 23148713 GGCTGACCTTTAAGATGCG 59 23148756 23149458 TTATCACATGACTGCCAGCT 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000078309 2 1 3 91 20 5227645 5227840 CTCACTCCTCCAGCTACAC 59 5227308 5227326 CTGGATCTCCTTCTCAGCG 60 NA Rattus norvegicus 81 Doc2g ENSRNOG00000018029 ENSRNOT00000024353 3 1 1 130 1 219251433 219251525 AAGACCCTGAGGCTATGTG 59 219251618 219251637 AGACAGATGTCAAAGCTCCT 59 NA Rattus norvegicus 81 Helq ENSRNOG00000002181 ENSRNOT00000002974 2 1 1 80 14 10481521 10481541 GGCTACTCTTCTTGGAATCTC 58 10481581 10484124 TTCTTGTCCACCTTCTTTCTG 58 NA Rattus norvegicus 81 Psma5 ENSRNOG00000019868 ENSRNOT00000026928 2 1 1 80 2 211054255 211058295 CCATCAAGCTTGGTTCTACG 59 211058336 211058356 GCGAGGTAATTCTCTTCTCCA 60 NA Rattus norvegicus 81 Agpat9 ENSRNOG00000002159 ENSRNOT00000002936 1 1 1 80 14 10349870 10350538 GTGGCAATAAAGTATAACCCTCAG 60 10349813 10349831 CCGAAGCAAATAGCTCACC 59 NA Rattus norvegicus 81 Olr1584 ENSRNOG00000003498 ENSRNOT00000004643 1 1 1 81 13 92103265 92103283 TGGTTCAGTCAGATTCGGG 59 92103325 92122914 CTGACATACCAGATTTCCAGGA 60 NA Rattus norvegicus 81 Olr1584 ENSRNOG00000003498 ENSRNOT00000004643 2 1 1 82 13 92103264 92103282 TTGGTTCAGTCAGATTCGG 58 92103326 92122914 CTGACATACCAGATTTCCAGG 58 NA Rattus norvegicus 81 Alas2 ENSRNOG00000000167 ENSRNOT00000000180 2 1 1 80 X 23181858 23181879 GGTGCAGTAATGACTATTTGGG 60 23181236 23181255 CAGCTCCATGATCTTCGGT 60 NA Rattus norvegicus 81 Helz ENSRNOG00000003213 ENSRNOT00000030300 1 1 1 80 10 95905447 95906381 GTTGATAGTTCCACCCAAGAC 59 95906422 95906441 TTGAAGGAACTGGACACCTC 60 NA Rattus norvegicus 81 Dscc1 ENSRNOG00000026502 ENSRNOT00000036399 3 1 1 80 7 94765453 94765472 GCTGAGTTTCAGGAAGTGTG 59 94763132 94765410 CAGTGCTAAACCCTTGAGC 59 NA Rattus norvegicus 81 Hsd17b1 ENSRNOG00000019830 ENSRNOT00000026878 3 1 1 81 10 88987874 88987893 TCAGAGACTCGGAATCTGTG 59 88987937 88988091 CGTCCAGCATTACAGACCA 60 NA Rattus norvegicus 81 Slc26a9 ENSRNOG00000029514 ENSRNOT00000009742 3 1 1 80 13 48532673 48532828 TTGCCAAGACAGGTATGGA 59 48532872 48532890 CTGCCATCCTCTTCTCCTG 60 NA Rattus norvegicus 81 Ets1 ENSRNOG00000008941 ENSRNOT00000011925 1 1 1 80 8 33851635 33854292 CCTGCAGAAAGAGGATGTG 58 33854336 33854354 TAATCCGAGGTGTAACGGG 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202,ENSRNOT00000066892 3 2 2 80 12 51335169 51337547 GTTCAAGAGTATCAGGTTGGAC 59 51335110 51335128 TTCGATTCCTTCTCCACCA 58 NA Rattus norvegicus 81 Enoph1 ENSRNOG00000002262 ENSRNOT00000003083 1 1 1 80 14 11176835 11178776 AGACATTCTGGAGCTCATCG 60 11176774 11176793 GCAATCTTCCGGTAACTGTC 59 NA Rattus norvegicus 81 Hspa4 ENSRNOG00000016596 ENSRNOT00000023628 2 1 1 80 10 38630715 38633011 CAAAGAGCCAGGTAATTTCCA 59 38630655 38630673 ATGGATCTGAGAATGCACG 58 NA Rattus norvegicus 81 Gmcl1l ENSRNOG00000030417 ENSRNOT00000048887 1 1 1 60 X 17707897 17707915 GGAAAGAATCACGCAATGG 57 17707855 17707876 CTGGTATCAATATCCTCGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng4 ENSRNOG00000003262 ENSRNOT00000004383 3 1 1 115 10 95956077 95956095 ATTCTGCTCCTGCTTGGAG 60 95954683 95956000 ATGATATTACTGAGGCCTGCA 59 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000085735,ENSRNOT00000086769 1 2 2 60 14 83053954 83053972 CCTCTTAGCCAAACAAGCC 59 83053912 83053931 ATCCTCGTTTAATGTGTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909485 ENSRNOG00000034120 ENSRNOT00000045802 3 1 1 60 X 18340802 18340822 TATACCAAAGAAGATGGCTCC 57 18340762 18340780 GCTTGGCTTTAACTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC132028.1 ENSRNOG00000043149 ENSRNOT00000064006 1 1 1 80 3 77921864 77921889 CTGTGGTAATTCTATGTAGTCCTG 59 77921927 77921946 AGGCATCCAGTAAGGATAGG 58 NA Rattus norvegicus 81 LOC100911766 ENSRNOG00000049324 ENSRNOT00000075588 1 1 1 80 1 214033456 214034486 CTGCTCACTTTCTTTGTGCT 59 214034527 214034547 GTCACTGTAGGCAAAGAAGAG 59 NA Rattus norvegicus 81 Lyzl4 ENSRNOG00000019350 ENSRNOT00000026173 3 1 1 84 8 130224109 130224127 TTCGGCCTCTTTCAGATCC 60 130222919 130224061 GATTCAGTAAAGCCGTGCA 59 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 2 2 2 83 10 37606666 37606685 TGATATTCCTGTTTGGGACC 57 37606730 37607837 TCTAAGTAGTTTGCAGCCAG 58 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213,ENSRNOT00000084311 1 2 2 80 10 89687207 89687227 TGCATCAATGTATCTTCACCC 59 89687026 89687168 GATTTCTCATAGCCATAACCCA 58 NA Rattus norvegicus 81 Cdkn2aipnl ENSRNOG00000005024 ENSRNOT00000006708 2 1 1 85 10 37422885 37424948 GGGTTGCAGTTACAATAAAGAC 58 37424994 37425012 TTGTAAACTGTGGCAGGTC 58 NA Rattus norvegicus 81 Inpp1 ENSRNOG00000012375 ENSRNOT00000016842 3 1 1 80 9 53567718 53567736 CTGATCCCACTCTGGAGTC 59 53567777 53571157 AGGTTGAATCTATGGGATCCAC 60 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431,ENSRNOT00000050819 1 2 2 80 X 23487937 23487956 AGATGAAGGACCTACAGGAG 58 23483415 23487896 TGAGCTCTTGCTTCTTAATGG 58 NA Rattus norvegicus 81 Rasal1 ENSRNOG00000001374 ENSRNOT00000001856 2 1 1 80 12 41421688 41421706 TTCAAGAAGCGCTACTTCC 58 41420730 41421644 GATGGATGAGTGAACCTGC 58 NA Rattus norvegicus 81 LOC100363319 ENSRNOG00000028988 ENSRNOT00000041268 1 1 1 60 7 91756783 91756801 GAGACAAAGCCAAGGTGAG 59 91756741 91756762 GGTTTATCAGACAACTTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598,ENSRNOT00000077938 1 2 2 80 2 39451250 39452702 TCACATTCTACAGGGTCACAG 60 39452740 39452762 CTTGCTGTTGCCAAGATATAGTC 60 NA Rattus norvegicus 81 Kat2b ENSRNOG00000011871 ENSRNOT00000061882 1 1 1 80 9 4447433 4447454 TTCAAGTAAAGAGCCCAAAGAC 59 4447272 4447393 CTTTGATGGCTCTTCACCTG 59 NA InUTR Rattus norvegicus 81 Hps6 ENSRNOG00000018433 ENSRNOT00000024898 1 1 1 60 1 265761970 265761988 GACCCAGCTATCCTAGTCC 58 265762011 265762030 GAGGTCTTAACAGTAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564836 ENSRNOG00000026969 ENSRNOT00000038940 1 1 1 60 X 33349292 33349312 CGCAGAAAGTTACCACAACTC 60 33349252 33349270 TCCTCCAGTTTCTTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 3 2 2 80 1 141082549 141084940 GTACCTGCACAGGATATACG 58 141084982 141085001 ATGGTTAGAAGGCTTTCGTG 58 NA Rattus norvegicus 81 LOC100911318 ENSRNOG00000030722 ENSRNOT00000040754 2 1 1 60 X 136737595 136737616 GGAAATCTTCTCATCCTTACGG 59 136737556 136737575 AGTACATGGGAGTTTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83a ENSRNOG00000006251 ENSRNOT00000008330 3 1 1 87 7 97866830 97879701 ATCATACAGCTTCTCTTGGCT 59 97879750 97879768 CTCATCAAACAGCTCCACC 59 NA Rattus norvegicus 81 Kcnj16 ENSRNOG00000004713 ENSRNOT00000006238 1 1 1 60 10 99388212 99388233 ACTCCAAATATCCAGGCTATCC 60 99388253 99388272 CTCCTCGCTCTTCTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055600.1 ENSRNOG00000047030 ENSRNOT00000074121 1 1 1 80 7 6885155 6885176 ACTAGTTATCTGTTCCTGGGT 58 6885095 6885116 GCACAGAATTCTAGTTTGAGTC 58 NA Rattus norvegicus 81 Zfp36l3 ENSRNOG00000029788 ENSRNOT00000050601 1 1 1 60 X 73475817 73475835 CCTGCTTCATACCCTGGAG 60 73475858 73475877 CGGAGACCATAGTTGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pstpip1 ENSRNOG00000016413 ENSRNOT00000063930 3 1 1 84 8 60797060 60797078 AGAACTACTACGACCGGGA 59 60797123 60797910 CCAGAGAACCTCTTTATCACAC 59 NA Rattus norvegicus 81 Zfp12 ENSRNOG00000006958 ENSRNOT00000038577 1 1 1 60 12 13373044 13373063 CCATCACAGAACTCACTCAG 58 13373003 13373022 GAAAGTCTTCCCACACTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139,ENSRNOT00000005561 2 2 2 80 7 94527240 94527262 CCTTCAGTTTATGCCTTCTACTC 59 94520845 94527200 ATTTGTCATCTCAGGGCCA 59 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139,ENSRNOT00000005561 3 2 2 80 7 94503444 94503465 CAGGGATTATGTACCTTCAGTC 58 94500852 94503406 CTTCCAATTTGTTCTTTGGCTC 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 3 2 2 80 8 59580250 59580271 TTGCGATATCTCAGTTAGTGGA 59 59582911 59584580 CTATCCATTCCTGCTTCAACC 59 NA Rattus norvegicus 81 Lif ENSRNOG00000007002 ENSRNOT00000009313 2 1 1 83 14 84498193 84498214 CTCATGAACCAGATCAAGAGTC 59 84498256 84498848 CCCTTGAGCTGTGTAATAGGA 59 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 3 1 1 60 8 36876880 36876900 CCTTACTCTGCTATTTGAGGG 58 36875965 36876562 TCAGGTTTGTTAGCATCACC 58 NA DesignNoJunction Rattus norvegicus 81 Itga9 ENSRNOG00000043167 ENSRNOT00000015113 3 1 1 80 8 127355100 127355119 CTGTGAACTGCCTGAATGTC 59 127355157 127363586 GATTGTAGTTCAGACCGATTTCTC 60 NA Rattus norvegicus 81 Nans ENSRNOG00000008945 ENSRNOT00000012260 3 1 1 80 5 62121620 62121638 ACTTCTGCTTCCTCCAGTG 59 62121681 62123434 TCTGGTATTCCGAGATGACG 59 NA Rattus norvegicus 81 Fam45a ENSRNOG00000010230 ENSRNOT00000013845 3 1 1 88 1 282198065 282202086 GGAGTTCACCAGGACTCTG 59 282202138 282202156 GTTCCTCAGCATGAAGGTG 59 NA Rattus norvegicus 81 Sntb1 ENSRNOG00000004821 ENSRNOT00000006423 3 1 1 97 7 95668875 95668893 CAGTGAATGGAGCAGACCT 59 95553563 95668816 CATGTACTTCACTTCCAGCAG 59 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680,ENSRNOT00000088381 2 2 2 64 12 52454551 52454569 AAGTCAGTGGGCTTCTCAG 59 52458951 52458970 TCTTGGCAACAAAGACACTG 59 NA DesignNoJunction Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680,ENSRNOT00000088381 3 2 2 65 12 52454549 52454567 AGAAGTCAGTGGGCTTCTC 59 52458951 52458969 CTTGGCAACAAAGACACTG 58 NA DesignNoJunction Rattus norvegicus 81 Cmtm6 ENSRNOG00000010951 ENSRNOT00000014585 3 1 1 98 8 122797239 122804782 ATTGCTGCAATTGTGTTTGG 59 122804842 122804861 CTTTCTAAGAGGGCTCTCCC 59 NA Rattus norvegicus 81 Ttpal ENSRNOG00000009076 ENSRNOT00000012606 3 1 1 80 3 160000561 160000580 ACTCTGGATTCCTCACAGTG 59 160000622 160004240 GTATCCATCTGTCTGGTCGG 60 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 1 1 1 83 8 36909476 36909928 TGTACAAGTCTCATACAATGGG 58 36909972 36909990 CCAAGTTTCTTCTGCAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Lrrc39 ENSRNOG00000015117 ENSRNOT00000020297 2 1 1 80 2 219612525 219612547 GAGGAAGAACAGGAGTTATTTGG 59 219612584 219615817 GTTGACTTGGTCTTCTGTTCTC 59 NA Rattus norvegicus 81 Olr1252 ENSRNOG00000049051 ENSRNOT00000071125 3 1 1 60 8 42365209 42365231 CTGGAGGTCTTTGTTGTTATAGG 59 42365171 42365190 AGATGAAGATGGTGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk10 ENSRNOG00000030281 ENSRNOT00000048240 3 1 1 81 1 99720980 99721640 ACCGAAGAGTGAAATACAACAG 59 99721681 99721700 GGGTAGAAGGTCTCACACTG 60 NA Rattus norvegicus 81 LOC100363596 ENSRNOG00000032940 ENSRNOT00000072039 3 1 1 60 1 79573260 79573278 CTGATGACACCATCCTGTC 58 79573302 79573320 CTGTAGGTGCAGCTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr729 ENSRNOG00000006771 ENSRNOT00000008864 2 1 1 60 3 78885626 78885648 GCTTCCTACATTCATTGGTACAG 60 78885588 78885607 TTAGGACCACAGAAAGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pygb ENSRNOG00000007583 ENSRNOT00000010157 1 1 1 80 3 146611963 146611981 ACTACATCGAAGCTGTCCT 58 146612023 146612816 CCTCGAAGAAATTGTCATTGG 58 NA Rattus norvegicus 81 Ufsp2 ENSRNOG00000012087 ENSRNOT00000016723 1 1 1 80 16 49470999 49471017 CTATTGAAGTGCAGCTGGT 58 49468703 49470958 CCATTTCTGAACCTTGATTGAC 58 NA Rattus norvegicus 81 Man1b1 ENSRNOG00000012559 ENSRNOT00000016846 2 1 1 80 3 2548146 2548606 CTCATGCTGGAGGAAATGG 58 2548649 2548668 CAGAGAATCAGAAAGCCCAG 58 NA Rattus norvegicus 81 Pdcd6ip ENSRNOG00000008981 ENSRNOT00000012114 1 1 1 80 8 121956148 121956168 GACCCTCAGTCTTATTATGCT 57 121954265 121956109 ATGGCATCCTTCATCTTATCTC 58 NA Rattus norvegicus 81 Igsf9b ENSRNOG00000009253 ENSRNOT00000012391 1 1 1 80 8 28381287 28381306 GGAGATGCTAGATGATGCCA 60 28381346 28382138 AACTCATACCAGGTATCCTGTG 59 NA Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 1 2 2 80 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422286 126422307 AGCTCTACTTCTTTACACTGCA 60 NA Rattus norvegicus 81 LOC100361828 ENSRNOG00000039445 ENSRNOT00000060446 2 1 1 91 8 37025859 37026104 CTTTGAAACAGGCTTCCCT 58 37025786 37025804 CTCTTGTAGTGCACGTCTG 58 NA Rattus norvegicus 81 LOC100360835 ENSRNOG00000000423 ENSRNOT00000000484 2 1 1 123 20 4318129 4318255 CTTTGTTAAAGGACGCCAGG 60 4318025 4318043 ATGGTAGGCAAGACCTAGC 59 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756,ENSRNOT00000078085 2 2 2 80 16 72103394 72104470 AACCTACTTACTCCTGTATAAGGAC 59 72104508 72104526 GTGAACTTTGGGTTGCAGG 60 NA Rattus norvegicus 81 Epha2 ENSRNOG00000009222 ENSRNOT00000012328 3 1 1 80 5 159866098 159866116 GCTCAAGTTTACCACCGAG 59 159866157 159866274 TATACCTCTCCAAACTCTCCTG 59 NA Rattus norvegicus 81 Vom1r109 ENSRNOG00000047242 ENSRNOT00000070823 1 1 1 60 1 68239908 68239928 TCCAGTACATCCATGATTGTC 58 68239950 68239968 TGTGAATGTGTTGAACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311744 ENSRNOG00000005960 ENSRNOT00000036054 1 1 1 80 8 43321153 43321265 AACACCATCCAAATGGCAC 59 43321091 43321109 CAGGGCGAGTATCTGTAGG 59 NA Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 2 2 2 80 8 61811579 61811802 ACCTGGGTAGAAATGGATGG 59 61811845 61811863 CAGAAAGAAGTTCTGGCCC 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000087753,ENSRNOT00000051290 3 3 3 80 8 127227414 127227432 AAAGGAGCATCAGCAGGAG 60 127227476 127228043 TCTTGCTCCTGTTTGAGCT 59 NA Rattus norvegicus 81 LOC685629 ENSRNOG00000048679 ENSRNOT00000072045 3 1 1 99 16 12174785 12174804 GGACACCTTCTATGTCCCTG 60 12174866 12175642 TTGGACAGCCGTATCACTC 60 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838,ENSRNOT00000048764 3 2 2 80 8 118160633 118160730 CACATTCGAGATGACGGAC 58 118160571 118160590 AGTTCGTGAATCACCTTCCA 59 NA Rattus norvegicus 81 Tti2 ENSRNOG00000023494 ENSRNOT00000032467 3 1 1 80 16 64741079 64741170 GGCCTTTGTGAAGAAGTTGG 60 64741018 64741036 ACCTCCAGGTAACCAAGGA 60 NA Rattus norvegicus 81 Zw10 ENSRNOG00000054479 ENSRNOT00000080712 1 1 1 80 8 53373827 53376893 AGAAACAGCTTCTAGATTTGCC 59 53376934 53376952 CAAGCATCTCAGCCAACAC 60 NA Rattus norvegicus 81 Vma21 ENSRNOG00000048606 ENSRNOT00000071269 1 1 1 80 16 70146607 70147281 ATATTTGAAGGTGCCCTTGG 58 70146546 70146565 CACATGAACAGCAACAACAG 58 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997,ENSRNOT00000080257 1 2 2 85 3 2717919 2717937 AGACTACGTCAAGTTCGCC 60 2717720 2717870 AGTCTCTACCCAGAAGGCT 59 NA Rattus norvegicus 81 RGD1562839 ENSRNOG00000045767 ENSRNOT00000048115 1 1 1 60 8 60751793 60751814 GCAAGTTAAAGGCAAGATTCTG 59 60751754 60751772 GTGCTTGATGTGCTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr747 ENSRNOG00000046816 ENSRNOT00000047270 3 1 1 60 3 102432171 102432192 CTGTATCTTCCAGATGTTTGTC 57 102432132 102432151 TACCAGCAACACCATTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camk2n1 ENSRNOG00000016322 ENSRNOT00000021864 2 1 1 88 5 156876806 156876824 ACACCAACAACTTCTTCGG 58 156876875 156878266 ATCTTCAATAACAACGCGCT 59 NA Rattus norvegicus 81 Fer1l4 ENSRNOG00000019467 ENSRNOT00000026451 1 1 1 80 3 151576133 151576234 CAGAGATCCAGATGGGACG 59 151576071 151576094 ACAGAGACTTTGATATCAGTCTCC 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 1 2 2 85 8 132173003 132173021 CTCTCATTTCCTTGCACGC 60 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Rtn4ip1 ENSRNOG00000000279 ENSRNOT00000000304 2 1 1 80 20 48899217 48903684 TTTGCGATACAGGTAATGAAGG 59 48903725 48903743 CTTCCTCACAAGCTCACTG 58 NA Rattus norvegicus 81 Anp32b ENSRNOG00000009266 ENSRNOT00000012478 2 1 1 80 5 62093390 62093411 AAGAAGAGTTTGGACATGATGG 59 62093449 62094204 TTTCTTCCTCCTCTTCATCCTC 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000000320 ENSRNOT00000000351 3 1 1 188 20 48309840 48309858 CTAGCTAGCTGTCCCTGAC 59 48300212 48309516 TTCCCAGTATCTCACAGCA 58 NA InUTR Rattus norvegicus 81 AABR07045454.1 ENSRNOG00000032964 ENSRNOT00000040519 1 1 1 60 20 48212384 48212403 AAACGCACCAAGAATGTCAG 60 48212425 48212444 GGAGTGAGGTACCATAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045454.1 ENSRNOG00000032964 ENSRNOT00000040519 2 1 1 60 20 48212591 48212610 AATACCACTTCTGCAGTCAC 58 48212631 48212651 GGTCTTTCAGTTCCTTCAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659,ENSRNOT00000015879 3 2 2 80 16 67552164 67552186 GTAACTCCTTGGATTACAACCTG 59 67552223 67564869 GTTCATCAGAAACCACTTCCTG 60 NA Rattus norvegicus 81 Olfr873 ENSRNOG00000046516 ENSRNOT00000071833 3 1 1 60 8 20993890 20993908 TTATGGAACAGCCTTGGGA 59 20993848 20993867 AGTACTTCTGGGAGAACGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmat4 ENSRNOG00000042690 ENSRNOT00000048602 3 1 1 80 16 73076903 73076924 TTTACAGACAGTTACTGCAAGG 59 73015611 73076864 CTTTCGACTCTCATAATGGGC 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 3 2 2 81 5 156094783 156097869 GACATCGATGTGATCATGGG 59 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 2 2 2 80 16 69070813 69070834 GATAACAAACTCTAGCTTGGGA 58 69070873 69074893 GGCTGGTATTTCTTCATGAGG 59 NA Rattus norvegicus 81 Focad ENSRNOG00000024402 ENSRNOT00000058387 3 1 1 80 5 106521848 106521867 GGAGGACAGAATCTTCAGCA 60 106521907 106553513 AATCAGATGTGGTACCTGAGAG 59 NA Rattus norvegicus 81 AABR07049064.1 ENSRNOG00000006721 ENSRNOT00000058536 2 1 1 82 5 103079046 103089625 TACAAGAATTGGAGCAGACTG 58 103089669 103089687 TTCTTCATCAACCAGCGTC 58 NA Rattus norvegicus 81 AABR07049064.1 ENSRNOG00000006721 ENSRNOT00000058536 3 1 1 82 5 103079047 103089625 ACAAGAATTGGAGCAGACTG 58 103089670 103089688 TTTCTTCATCAACCAGCGT 58 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615,ENSRNOT00000078862 3 2 2 80 5 101117164 101121086 GAGACATTACAAGATGGAGCTG 59 101117105 101117125 CTGATGGAGATGTGAACTGTG 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 3 2 2 86 3 162368307 162371012 CAGCTCTTTGCGAAGTCTC 59 162371062 162371080 TGTGCTGTACTGTGTCTGG 60 NA Rattus norvegicus 81 Ptprd ENSRNOG00000005711 ENSRNOT00000075474 1 1 1 80 5 93056686 93058612 ACGATCAGAATCTATTGGTGGT 59 93055037 93055056 TATTTCCCTTGGTCGGACTC 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419,ENSRNOT00000087254 2 2 2 86 5 77139289 77144411 TGACTCCATGAAGGGTGTG 59 77144461 77144479 TCTTTCCTCAGAGCCACAG 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419,ENSRNOT00000087254 3 2 2 87 5 77139289 77144411 TGACTCCATGAAGGGTGTG 59 77144461 77144480 TTCTTTCCTCAGAGCCACAG 60 NA Rattus norvegicus 81 Olr845 ENSRNOG00000048481 ENSRNOT00000071002 3 1 1 81 5 69246694 69247229 ACTTGTGAGGTCTTAGCTGTC 60 69246633 69246654 CCATATTTGATATCGCCATGGT 59 NA Rattus norvegicus 81 Atp9a ENSRNOG00000049484 ENSRNOT00000071672 3 1 1 87 3 165421979 165424512 GCATCAAGGTTTGGATGCT 59 165421910 165421928 TCTTGGTTTCTGGTCACCA 59 NA Rattus norvegicus 81 RGD1559811 ENSRNOG00000013740 ENSRNOT00000018362 3 1 1 128 16 74962919 74962937 AACAAGAATTGAAGCCCGC 60 74960522 74960541 ATTTGCTCACCTTGAAGGGA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392,ENSRNOT00000057740 2 2 4 81 16 81627235 81627256 TCAGAGAAGACTCAGAAGTCAC 59 81627294 81627460 CTCCATTTCTTGTAGGTCTTGTC 59 NA Rattus norvegicus 81 Prosc ENSRNOG00000013751 ENSRNOT00000018369 2 1 1 80 16 69164880 69165667 AGCACGCTATTGAAGTAGGA 59 69164819 69164840 CAGGTTTCTTTGAGTAATCCCG 59 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 2 2 3 83 3 153451935 153451954 CAAAGATCCAGGTTCAACCG 59 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 1 2 2 114 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528554 75528572 AACAGAGTCGGTAGATGCG 60 NA Rattus norvegicus 81 Hook3 ENSRNOG00000014275 ENSRNOT00000019281 2 1 1 80 16 70779251 70780434 TATAGACCCAGACTAGAAGCA 57 70780476 70780494 CCGAAGCTCAGAGATTTCC 58 NA Rattus norvegicus 81 Tmco3 ENSRNOG00000019346 ENSRNOT00000026281 1 1 1 80 16 81574715 81574736 GAATTTGGCGTCTTCTTTACTC 58 81566337 81574677 GGATATTCTCCACACCTTTCTC 58 NA Rattus norvegicus 81 Bpifa2f ENSRNOG00000036870 ENSRNOT00000055345 1 1 1 80 3 149530986 149531005 AACTTAGCTCTGGACTCTGC 60 149531048 149531769 GAGCACTGGACACAATTGG 59 NA Rattus norvegicus 81 Cldn23 ENSRNOG00000011424 ENSRNOT00000015176 1 1 1 60 16 59988910 59988929 GGAACTACTTCGGGACTCAG 60 59988951 59988970 GCCAGTGAAGTGATCATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cir1 ENSRNOG00000018719 ENSRNOT00000064662 1 1 1 80 3 59997872 59997891 ATGAGAAACAGTGGGTTTGC 59 59996635 59997829 GACATAGTCCTGCGATGGA 59 NA Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000080707 3 1 2 80 3 160092978 160110129 CGAAATTAAACTAGGCCTGAGG 59 160110170 160110188 TCACAGGAGATGAAGTCCG 59 NA InUTR Rattus norvegicus 81 LOC100912321 ENSRNOG00000032890 ENSRNOT00000043510 1 1 1 60 16 34796301 34796324 GTACTCTTCTGTTTGTCATCTTCC 60 34796341 34796361 AAGACATGAATCGCACATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912321 ENSRNOG00000032890 ENSRNOT00000043510 3 1 1 60 16 34796395 34796416 TTATATTCTCGTGCATCTCCTG 58 34796436 34796455 CTTGAATGAGTCCAGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686662 ENSRNOG00000042867 ENSRNOT00000064470 1 1 1 60 16 81479615 81480638 CAAGAAGTTGAAGATGGAGGA 58 81480658 81480678 AAGCAGGTAGTTGTTTCTGTC 59 NA DesignRelaxed Rattus norvegicus 81 Tnks1bp1 ENSRNOG00000009195 ENSRNOT00000012209 1 1 1 80 3 72481959 72481977 CTAAGTCCTGCAAGGTCCC 60 72482021 72482272 ATCCTTCTGACCCTGAGGA 59 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000035128 1 1 3 80 16 75479376 75479395 ATATGGTCATGGAGGACCAG 59 75478799 75479334 CCTTCACAACTGCATCTTGG 60 NA Rattus norvegicus 81 Sulf2 ENSRNOG00000006052 ENSRNOT00000008478 3 1 1 80 3 162810429 162811278 TACTCCACGGATTACCTCAC 59 162810368 162810387 GTGTGGGTACATCTTCTTGG 58 NA Rattus norvegicus 81 Ifih1 ENSRNOG00000006227 ENSRNOT00000009620 3 1 1 80 3 48598658 48603433 CAGAAATCGGATTTCTGCTG 57 48598597 48598617 TCTTTCTGCACTATCCTTCTC 57 NA Rattus norvegicus 81 RGD1562923 ENSRNOG00000038458 ENSRNOT00000058595 2 1 1 60 16 69280058 69280081 GTACTCGGTATATGTTCTCTAGAC 58 69280021 69280039 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a1 ENSRNOG00000016281 ENSRNOT00000057386 2 1 1 80 16 83627909 83628961 CCTTTGTGATGCACACCAG 60 83629003 83629023 TAAACTCTTCCAGACAGGACC 59 NA Rattus norvegicus 81 Nup35 ENSRNOG00000009290 ENSRNOT00000012628 2 1 1 80 3 67889983 67892462 TGACTGTGTTTGGGTTTCC 58 67892504 67892524 CGTGCTTTAAGATATTCCCGT 59 NA Rattus norvegicus 81 RGD1564899 ENSRNOG00000049942 ENSRNOT00000073370 1 1 1 60 16 8882840 8882859 CCACTATCCAATAGCACACC 58 8882799 8882817 CCTCCACTCCCTCATACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jund ENSRNOG00000019568 ENSRNOT00000026470 1 1 1 62 16 20486266 20486284 TGATCATCCAGTCCAACGG 60 20486222 20486240 TAGGGTAGAGGAACTGCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam171b ENSRNOG00000004783 ENSRNOT00000006504 2 1 1 80 3 71257818 71260230 CCCAAGCACTTTAGATTTGGG 60 71260272 71260290 AGGATGGCTGTAAGGAACG 60 NA Rattus norvegicus 81 RGD1564807 ENSRNOG00000031728 ENSRNOT00000057349 1 1 1 60 16 86582449 86582467 GTAAGAGCAACGTGGAGGA 59 86582407 86582425 ACAGAAGGCGGAGTTAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685790 ENSRNOG00000027980 ENSRNOT00000034303 1 1 1 82 X 73023333 73023351 ATTCCATGAATGCAGGCAC 59 73023394 73024032 AACACAGACCTCATTCATATCC 58 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000080324 1 1 2 83 2 196494815 196496307 TAACTGGAAAGGAGCTGGG 59 196496354 196496372 CACTCTGAGGATCCCTTCC 59 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000077883 2 1 2 80 2 212257430 212326432 CTTTGCAGGACTGAGTTTCTC 59 212326472 212326492 TTTCTTCATTCCGAACGTGTC 59 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000087430 3 1 2 134 15 33756360 33756379 AGATCATCAGCGTCAGTAGC 60 33757607 33758567 CTGAGGATCCGGAACTGTC 60 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 3 3 3 80 11 38046464 38051174 CTCAATTCAGAGCTCTTCTGG 59 38051216 38051234 GTGAGATGAGCTCCATGGT 59 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000089303 1 1 2 91 2 52514610 52514628 TATCACCAGCAAGTACCGT 58 52514435 52514555 TCATGTGTTCCTGTTTGCT 58 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847 3 1 2 81 2 56123073 56123091 CATCTCAGCCAACAACAGC 60 56121599 56123029 ATGGACCTTCTCATGTCCAG 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 3 2 3 81 2 219094644 219096768 ACATCTACTCATTCCCTAAGGA 58 219094584 219094602 AAACACTTGACCATGACCG 58 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 2 2 3 178 2 187863138 187863156 AGTCTGAAGAGGTGGTCAG 58 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 116 2 216493578 216498239 CTTCCCAAAGTTTGCATCCT 59 216493481 216493499 TGTTTAATGCTGCAGGCAC 60 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464 1 2 3 92 16 2158174 2158192 AAAGAACAAGAGCTCCAGG 57 2142307 2158120 CATCAGCTTCTCTTGTAAAGC 57 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 3 2 5 80 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443839 26443954 GGGTAAGCACTAATGCAGTC 59 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074 3 1 2 84 8 62930775 62930793 CTCTTCAGCAATCTGTGCC 59 62930841 62930864 TTGCTGGATACCTGGATGC 60 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195 2 1 2 80 5 136075077 136075095 TCATAGCCATGCTCATCCC 59 136074942 136075035 TCTGGAGAATCGAAGAGTCAC 59 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 3 2 2 80 5 139897871 139898785 ATAGACCCAGCTGTTGAAGG 60 139897810 139897830 GACATTGATGTCCAGACTTCG 59 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 2 2 2 80 1 83513212 83513374 GGGATATGGTGTGATCTTTGC 59 83513414 83513434 CCGAATTCTTTCATGGTGACC 60 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000067506 1 1 2 80 4 179415808 179421316 TGAGTTAGGAACGACAGAGG 59 179427542 179427560 ATGGATGCTTTGGGAGGAG 60 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 3 2 2 85 1 79649697 79649716 TGAGGATCTGCAGGAAATGG 60 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 1 2 2 83 1 89103815 89103833 AAACGCTGCATTCGTACAG 59 89099800 89103769 GAAGATTCGGAAGTCATCGG 59 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220 1 1 2 80 11 51054722 51057267 CCTCCATTAGGTGAAGATGC 58 51054661 51054681 GATGAGACTATGTCTTGCAGG 58 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513 3 1 3 94 9 8091222 8091244 CTTTCTATGCTGCTTATCTGGTC 59 8093279 8093298 GTGCTATTGAAGCCGATGG 59 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000079137 3 1 2 80 6 22263072 22266503 TACAACTCCTAGAGAAGCTGC 59 22263012 22263036 TCAGGTTAGTGCTCTCATTATAGAC 60 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 2 2 2 80 2 263212271 263348580 ATCTCACTGTGCAAGTTCCA 60 263348623 263348641 TAAGGGTGACGTTGGTTCC 60 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000048417 3 1 2 95 11 46202426 46202444 TGTACCAACAGTACCAGCA 59 46202500 46205155 TTGACTGGAATCCTGAATACTG 58 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000084023 1 1 2 80 2 196013863 196013883 ATCAGTGATGTCATTGAGGAC 58 196013924 196019984 GACCAAAGTATTACCAGCGG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000070871 2 4 7 81 11 46290866 46290887 AACTTACGATGTTGTCTCAAGC 59 46289807 46290828 CAGAATAGGATCACTTGTTGCTG 60 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073 2 1 2 92 1 196960420 196960438 CTATAGGGCACGTGTGAGG 60 196960491 196960855 ACATTATTTGGGTTGTACCACG 59 NA Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735 1 1 2 86 12 51961619 51975373 TCAATGATGAGCACCAAGC 59 51975423 51975441 CCTGTTGCCTCTTAAAGGG 58 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675 1 2 3 87 4 156412433 156412451 CCATCCTGAGGAGGATCTG 59 156411977 156412384 TTTCAGGAACTCAGAGTTAGC 58 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675 2 2 3 88 4 156412433 156412451 CCATCCTGAGGAGGATCTG 59 156411976 156412384 ATTTCAGGAACTCAGAGTTAGC 58 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990 3 1 2 141 1 222530215 222531205 AGTTTGTCCGCAGAAATCTG 59 222527594 222527612 GCCTCCCGAAATTCTTCCT 60 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386 2 1 3 133 4 7207004 7207022 AGTTACTCAGTTCCAGCCC 59 7205439 7206907 CTCCTCTGTCTCTTCAGCA 58 NA Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 2 1 1 64 4 172128463 172128481 GAAGTTCCTTCGGACTGAC 58 172134005 172134023 TTTCAAGGTCGTTCAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000003428 1 1 2 91 13 35633902 35633926 CTAATAAAGCAAGAAGATCGACCTC 60 35629714 35633855 CTTCCCTGTTTCACCTTTCAC 60 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000003428 2 1 2 96 13 35629713 35633852 AAAGGTGAAACAGGGAAGG 58 35626229 35626247 GCACAGGAGACTTCATACC 58 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000085462 2 1 2 81 16 19044833 19047169 CCCATGTCAGAAATCCGGA 60 19047213 19047232 GTGCCTCTTTGGTGATAGGA 60 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000088327 1 1 2 119 2 188226433 188227395 ATGAGAAAGGCAGCATCTC 58 188226332 188226350 TCAAATCTGGCCTTGAGAG 57 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587 1 1 3 85 15 39735106 39735125 AGTAACAGTCAGACACTGGA 58 39732057 39733263 GGTGTATGATTGCTATGTTGAG 57 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396 3 1 2 120 4 145240530 145240956 ATATCTCCAAACCGCAGGA 59 145246269 145246287 GTTCCACACTTCTTGCCTG 59 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000091934 2 1 2 94 4 145239970 145239992 CGTTCTCGACTATTTCTTTGAGG 60 145240534 145240961 GGAAATCCTTCGGTTTGGAG 59 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000050393 3 1 2 84 1 188503091 188503110 ACCATTTCTGGACATGTTCC 58 188503156 188510283 AGTGAGAGCGTTGATAAAGG 58 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 3 2 2 81 10 37285805 37286424 AAGGAGATGGAGAAACCCG 59 37285742 37285760 TATTCTGGTGGCACAACGT 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438 3 1 3 84 X 37970204 37970222 ACTTCATCAAGGAGCTGTC 57 37958677 37970159 GTTTCTCTTAAGCTTGACTTGG 58 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 2 1 1 74 4 157058013 157058031 AGACTGTTGGAGCGAACTC 60 157058148 157058168 TATTACCACAGTATGGACCGC 60 NA DesignNoJunction Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000054944 1 1 2 80 10 109883590 109883608 GAGATGGAGTGGACCTTGG 60 109884232 109888575 GAAGAGGTTTGCCTGAAAGAG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 3 4 7 83 1 215610468 215610577 ACCTGAAGAGTGTGATGCTC 60 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 3 2 2 80 19 26076909 26076928 TGAAGAACTGGCAGTTTGTG 59 26075390 26076866 TGGTCTTGGGATCATTGGG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 1 3 3 80 12 8101781 8101799 TCTCACCCAAGAACATGGA 58 8101842 8102178 TGATAAGAACGGCTAGGAGG 59 NA Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 3 2 2 80 7 15205817 15205836 TGAATTCCTAAAGGCCAGGG 60 15205437 15205774 TTCCCATGCTCATCCTTGG 60 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000087291 2 1 2 82 17 42926490 42927685 TTTCAGGCTCCAGTATGCA 59 42926426 42926444 AAGCACAGTTGGTTTGGAG 59 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 1 2 2 80 5 138181522 138181816 TTCCAATATGTGGAGCAACTG 59 138181855 138181876 GGTGAAGATGAAGAAGAGTACC 58 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248 2 1 2 86 20 10438617 10438636 TTCCTGTCTTCCACCATCAG 60 10438685 10440058 GTCAGATCGGACCTCAGAG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898 1 1 4 83 10 39307417 39307435 TTTACTCTGCTCTTTGCCC 58 39211429 39307372 GGAAAGAATTTCTGTTCCCAG 57 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000011340 1 1 4 86 10 39212474 39220271 TCTCAGACAGGTTTGGTCG 59 39212406 39212424 TCACAGAGAAGAGCTGCAG 59 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000027091 2 1 2 124 1 220244933 220244951 CGTTCCATCATTGGCTCTG 59 220246135 220246154 CAAATCCGCCTCTTCTGAG 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000036654 3 1 6 82 4 157538800 157538818 AGTCAGGCATCTGTTACCC 59 157538864 157539361 ATTACCAAACCAGGACCCG 60 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000021040 3 1 2 80 14 104500454 104500472 AGCACTTGTCATGCATGTG 59 104500512 104501005 GAATAAAGGTGACACCAGATCAC 60 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000019862 1 1 2 156 17 15358007 15358025 TTAACAGGAACTGTGGGCA 59 15356585 15357893 CTGTAATTTCTTGTGTCTGAGTCTC 60 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000007069 2 1 2 80 3 51749858 51749877 ACCTAGGCAATGTTTCAGCT 60 51749918 51751036 TCTTCAGGCCTGGAATTACAG 60 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000006249 3 1 2 89 7 28701787 28711615 CAACAAACAGCATCACGGA 59 28701716 28701734 GGCAAGTTCAGTTTCTCGT 58 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000087678,ENSRNOT00000012948 1 2 3 83 15 45524573 45535930 AAGGTTCTGGATGTGTCCA 59 45524508 45524529 GTCATAGCCAGACATCTTACAG 59 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000087678,ENSRNOT00000012948 3 2 3 85 15 45524575 45535932 GCAAGGTTCTGGATGTGTC 59 45524508 45524529 GTCATAGCCAGACATCTTACAG 59 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000001203 2 1 2 88 12 6303355 6303373 GAAACGGATGTTCCAGCTG 59 6303424 6303660 CAGTTGCCTGTCTCAAACAG 60 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 3 3 4 81 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534704 43537130 AACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 2 2 2 93 1 31871821 31880989 CAAGATCAAAGGGAAGTCCTG 59 31871748 31871766 GCTCTTATCCTTGAACCGC 59 NA Rattus norvegicus 81 Pde6g ENSRNOG00000046962 ENSRNOT00000074354 2 1 2 86 10 109621046 109621528 CTGGGAACAGATATAACCGTC 58 109620980 109620999 CTAGATGATGCCATACTGGG 57 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 3 2 2 80 2 157749769 157749790 CAAAGGGATTGAATCTTGATGG 58 157749473 157749729 TTGGTGATGATGGTTTGGAG 58 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 2 2 2 80 13 89587354 89588671 GAAAGACATGATACTGTCAGCAG 60 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000078603 2 1 2 81 12 12730852 12730870 CCTAGTGACTCCGTCTGTG 59 12729167 12730808 AAATGAAGCCTGAAATGCGG 60 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000078603 3 1 2 131 12 12729176 12730816 AGTCCTTTCCGCATTTCAG 58 12726222 12726242 CTCATTCACCAGTCTAGAGAC 57 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078221 1 1 3 80 11 53545558 53562268 TGCACATTAGTTTCGTGGT 58 53545496 53545515 CCAGAACAGGAGTATAGCCA 59 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 3 1 1 114 5 162032732 162032750 GGAGAACGCATCCAAACTG 59 162052479 162052498 CTTACACTCGCTGAAACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 2 2 2 80 17 15686127 15686145 CAGGACTACTCTGAGCTGG 59 15682724 15686083 AAATTCCACCTGGTTCTGC 58 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 1 2 2 80 18 32351653 32351675 ATATAAAGGGTACAGAGACTGGC 60 32351714 32356445 CTTCATTTGGTGTCTGCGAG 60 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 1 2 2 180 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550624 98550642 CATTGGATGTAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000086560 2 1 2 89 19 19673486 19677320 GGAGGAGAGTCAAGGAGGA 60 19677370 19677391 TTATAGGGACATGACACTGGAG 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656 2 3 6 82 1 282681116 282681756 TCTAACCTGCCTGTGATGG 59 282681800 282681820 GCCAATAGAGATCCATCACAC 59 NA Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000081105 1 1 2 80 17 42634635 42634655 GGAAGTTAGATGTGATGACCA 58 42628293 42630374 CCATTTCCACAATTGCTGTG 58 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 1 4 4 80 10 82091135 82091156 CTGTGATAGTCTTGCTGATACC 59 82089393 82091097 TGAACTTCATTTGCTGTACCTG 59 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000020717 1 1 2 80 2 187081536 187086190 CCTCTCAGAGCATTAAGCC 58 187086234 187086252 GCTCTGGGACATCATACTG 57 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000091236 1 1 3 81 10 38891572 38891598 TGATAAAGTGTAGTTACAGGCC 58 38891639 38891658 CGAATCTTCAACTCCTCCTG 58 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 1 2 2 80 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238662 ATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 2 4 5 141 4 22380978 22380996 ATCTTGAAGGGCCTCAACC 60 22280193 22380873 GTCCGTCGATACTGACCTC 59 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 1 3 3 81 17 23175163 23177435 GCATCATCAGCTGAGTCAG 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 2 2 2 80 10 105216097 105216117 GTGAAGATCGACAAAGTGAGG 59 105131425 105216055 TTCTTCACTTTCAGCCTGC 58 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056251 1 1 3 101 9 121862813 121862834 GGTCGATTTACGATAAAGTCAG 57 121862895 121877759 AATTGAACTCAGGACCTCTG 57 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000083651 2 1 5 90 16 19728844 19728863 CTAGACTTCTCCTTTGAGCG 58 19728916 19730706 TATGCAAATCGTTCCTGCT 58 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 1 1 1 68 X 48792453 48792471 TTCTACCGACCTGTTGCTG 60 48802125 48802143 ATAAAGGACCAGGCTGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472,ENSRNOT00000076353 2 3 4 115 19 758317 758338 GCTTCTTCAATAGTCTGTTGAG 57 760002 760021 CTGAACGTTTGACAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 2 2 2 83 7 70584141 70584160 TATGAGGATCTGCAGGAGGT 60 70584203 70584526 TGATTCTTCCTCTTCGTTTCCT 60 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089 1 1 2 123 11 38678728 38678749 TGGGTAAGGAATGTACTTTCTC 58 38677733 38678644 TTAATCCTTGGGCAGAGTG 57 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089 3 1 2 127 11 38678728 38678749 TGGGTAAGGAATGTACTTTCTC 58 38677729 38678642 TTACTTAATCCTTGGGCAGAG 58 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777 2 1 2 83 10 81755832 81772378 GCCTGAAGGATGAACTTTCTG 59 81772422 81772441 CTGACACATCCGAATTTGCT 59 NA Rattus norvegicus 81 LOC100365995 ENSRNOG00000031385 ENSRNOT00000041100 1 1 1 90 4 70617026 70617407 TCTTGGTGTGAACAACCCA 59 70617460 70617479 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 LOC687441 ENSRNOG00000016997 ENSRNOT00000023028 3 1 1 86 20 6157041 6157247 TCTGGAAGAAGAGCCACAG 59 6156973 6156991 TCCAGGGATTTCTTCCTGG 59 NA Rattus norvegicus 81 Pik3cb ENSRNOG00000016384 ENSRNOT00000022179 3 1 1 80 8 107312806 107327253 AGAAACCGTGAAAGTTCATGTC 60 107312747 107312765 ATCTCTGAGCTTACGACGG 59 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 2 2 3 80 20 2089441 2092246 ATCAACTGCAAGTTTCAGGA 58 2092289 2092307 TCCAAGAGGAGGAAAGGAC 58 NA Rattus norvegicus 81 Hebp2 ENSRNOG00000053735 ENSRNOT00000079522 1 1 1 94 1 13718179 13718197 GAGCAGCAACATGATCCAC 59 13714992 13718121 AATCCATCGAAAGACCGCA 60 NA Rattus norvegicus 81 Cdh18 ENSRNOG00000010535 ENSRNOT00000014013 3 1 1 80 2 74669710 74684504 CAATGAAGATAACACAGCCAG 57 74684544 74684564 ATGGGCAGATAATACACATCC 58 NA Rattus norvegicus 81 Peli1 ENSRNOG00000006329 ENSRNOT00000009319 1 1 1 80 14 106059682 106059702 AGATATCCGTATGTGGGAACG 60 106059741 106060240 TTTCGATTTCCACCATCTTTCC 59 NA Rattus norvegicus 81 Ccar2 ENSRNOG00000018295 ENSRNOT00000024895 2 1 1 80 15 51820503 51820522 ATCGGAGCCTTCAGTATAGC 59 51820363 51820463 GTAGATCCAGGTTTCCAAAGAG 59 NA Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 3 2 2 80 2 196298038 196298211 GCATTAGCAGTGTAGTGCAG 59 196298253 196298272 GCATCTCCTCAATGTTGGTG 59 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000030461 2 1 2 82 1 211368574 211368592 GTCTACCATCTGCACCAGG 60 211368636 211378118 CTTATCTCCTCCATCAGCCTG 60 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 1 2 2 80 15 41142349 41165694 CTATGTTCCTGACACTGCCT 60 41165731 41165755 GACATGAGGTATGAGTAATACTTGG 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 2 2 3 108 3 72432627 72432845 ATTCTGTCCAGAGAATGAAGAG 58 72431993 72432011 AACAGAGCTGTAGTTCACG 58 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968 1 1 2 80 10 94948274 94951744 ACTTCACAATCATCCACCCT 59 94954972 94954996 GGAGTATTAGCATAACACATACCTG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 2 1 2 80 13 90521511 90521529 GCGGTACTCGATCTTATGC 58 90522276 90527717 AGGTCCAGTGTACATCTCC 58 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678 2 1 2 80 4 115181588 115181607 GGTGTTGAACATCAGTGAGG 59 115180551 115181546 TTGTCTGAATCTCCCTGCTG 60 NA Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 1 2 2 80 6 132272088 132272108 GATGGACACCTACTTTGAGGA 59 132272150 132272773 TAGGTAAACCTCGGCTTGG 59 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733 3 1 2 86 6 132421370 132425317 CTACATTCAGTCCAGAAGAGG 58 132425365 132425383 AATCCACTTGGTCTTTGGG 58 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621 2 1 2 94 12 52068978 52068996 TGTGGCTGAATTCTCCTCC 59 52068450 52068920 CTGTTCTCCCTACCAGCTG 60 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000088306 2 1 2 80 12 52068728 52068927 AAAGATCCAGCTCCTTATCAG 57 52068668 52068687 TCATAGTTGATCACCAGCTC 57 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 2 2 2 84 9 5324425 5329140 TTTACCATGACAGCCACCT 59 5324359 5324377 AAGCTAGACCACAACCTGG 59 NA Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 3 1 1 139 2 192288481 192288500 TCCCAATCTTTGTCCTCCTC 59 192283244 192283262 CTGGACACTTTGGAGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000066895 2 1 2 80 10 82492813 82492834 AGAAAGACTTCTGAGTCTTTGG 58 82489527 82492772 GGCATGGTATTGTCTGCAG 59 NA Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 3 1 1 84 19 25947265 25947283 TAGCGACCATGCAAGAGTC 60 25948668 25948687 CACTCTGCAATATGCTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658 2 1 2 90 9 64572909 64572927 AGGATGTTGTCAATTGCCC 58 64571018 64572855 TGATTTGTTGTTTGCGTCG 58 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000082192 2 1 2 133 1 188693806 188693824 CTTGGAGCAAAGATCCAGC 59 188692426 188693709 CAGTTGGGATAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 1 5 5 131 12 52398219 52398237 AAGACAAAGTGTGGGACGT 60 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA InUTR Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000084535 3 1 2 98 10 63327681 63332247 TGAGTCAAAGGTTTGTGCT 58 63332308 63332327 AGATTCCAGTGGTCTTATGC 57 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000017472 2 1 2 80 4 157234386 157234404 ACCGGATCTATCTCACAGC 59 157234841 157235037 TAATGAGGCTGTCACTTCCC 60 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 1 2 2 80 1 37740070 37740273 GGCTGCAAGGTAAAGAGTC 59 37740008 37740028 ACTCTAGGACAGAGGTTAGGA 59 NA Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 2 2 2 94 15 55421915 55423682 GAATTTGGTGAGACCTGGGA 60 55421840 55421858 TTTACCACCGAAGCAAAGC 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 1 2 4 80 7 116744873 116744980 TACTCTTTCACTGGTACGACTC 59 116745021 116745039 ACAGTACACTGCCCTTCTC 59 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000079999 2 1 3 82 9 10624627 10624650 CAGATCAAAGAAGACAACCACC 60 10624693 10624711 CAGCTGACACCCAGATCTC 60 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539 1 1 4 84 7 64707814 64709217 TAACTGCCTCAAGTGACCA 59 64709265 64709283 TCATCATGGCGGAATTTGG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619 3 1 3 80 4 181120328 181120346 GTGGTTGGATGTGAAGGAG 58 181120387 181124739 CAAACTAGCCTGATCATAATGC 58 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000088757 3 1 3 80 20 2095465 2096768 CCAAGGAAGGAGAATCGGA 59 2096812 2096830 AGTGTCACTTGACCACTCC 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000035590 1 1 4 80 19 41271056 41271674 TTACTGTGACATCTCAGTGAGG 60 41270997 41271016 TGTTAGGAGTGATCCTTGGG 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000080694 2 2 4 80 19 41204634 41204653 GTCAGGATGGAGTTGTACCC 60 41202721 41204592 TTCTTTGACTTTCTTGGGCG 59 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286 2 1 2 80 11 61253476 61253494 AGCAATTCCTGTTCTCCAC 58 61252347 61253435 CTTCTCAGTCTTTGTTCTTGGA 58 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902 3 1 3 81 9 65104702 65104720 CTTCATGCTCCACAACCAG 59 65104764 65117398 ACAATCGAAGAGAACTCGTG 58 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502 1 2 3 83 2 264992478 264992496 AGAAGCCCATCCAGAAACC 60 264989929 264992434 GACTGGAAATCTTCATCACCAC 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353 2 1 3 80 6 8344413 8344432 AGTGTCTGCAGAATAAACCC 58 8336094 8344371 GCAGAAGATCCTTACGTGAG 58 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578 2 1 2 80 6 72403535 72403557 ATTAATCAGTCTAGGTCAGCCTC 60 72399414 72403498 AAACGTTATTGGTTCAGCTTCC 60 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 2 1 1 67 X 65335849 65335867 GGAAAGGTAAGAAGGCCCA 59 65335638 65335658 TGGATTCTTGGTAGGGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409 1 1 2 80 4 175852242 175852264 CCTTGGCTTTATCATGTCATCTG 60 175852302 175855544 GTTATTCGGACACTGTTCAGG 59 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000071615 3 1 3 82 10 42618567 42618585 ATCTTGACAACCACCGAGG 60 42618633 42618653 GATTCACAGTCACCCACCA 60 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000057407 2 1 2 104 14 85272225 85272695 ATGAGCCTGAAGGGATTGG 60 85272763 85272781 CACTTAAGCCACTGCTGAC 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040 3 1 2 80 17 53479773 53483973 ACTACTGAAGGTGACTGTCC 59 53484016 53484034 GTGATGATGTTCAGGCCTC 58 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 3 2 2 81 4 148233572 148247007 ATCTTTAAGTGGTGGCTCTG 58 148247051 148247069 GATTTGTTGCCCAGAAGGA 58 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 3 1 1 60 1 88457630 88457649 GTGTCTGAGAAGAACATCGA 57 88461523 88461547 GTCCTTATCTGTGTATAAACTCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000079707 2 1 2 87 13 48689966 48690250 CGCTTCCTAGCAGAAATAGG 58 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169 2 1 3 82 6 76701304 76701323 CGATGAGCTTCAGTCAAGGA 60 76701365 76701619 TATATGGACCTGAGACAACGAC 60 NA Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 2 1 1 83 2 191294265 191294284 AGACAAATTGGATGTCCAGG 58 191291774 191291793 ATACCACTTGCATTCAATGC 57 NA DesignNoJunction Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853 3 1 2 80 12 19581316 19581335 CACAGATGAGGTCATCTTCC 58 19581154 19581273 GTCACTACAATCTTGGCCT 57 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 1 2 2 80 4 179512406 179512424 GAGTGCCTTGACGATACAG 58 179500983 179512363 TGTTTCCTGTAGGAGTCCTC 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655 2 1 4 81 14 22520088 22520109 CCCAACATTACCAAATGTTGAC 59 22520148 22521150 AAAGTCTTCTATATCCTTGGGC 58 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000019772 2 1 2 81 9 78919452 78919474 GAGTATGTGGTTAGTGTCTATGC 59 78918565 78919411 GGTCAATGTTGGTCACTGC 60 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000085301 1 1 3 81 2 236625839 236626537 GTGTGAGTTGCAAGATGTCC 60 236627937 236627955 CTCAGAGTCGATCCCAGTG 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881 3 1 3 80 17 43664746 43665695 AACCACAGTAAGGTCACGA 59 43665739 43665757 TTCATGCACCTCACATCCT 59 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476 2 1 2 85 18 41355436 41355455 GAATGATCTGCTCAAGGCAC 59 41334744 41355390 GAATCACTCCCTTCTTGTCCT 60 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000080788,ENSRNOT00000079513 2 2 4 124 4 152487487 152495350 ACCCTCAAGTATGGCACAG 59 152485509 152485527 GTTGAGGAGGTACAGTCGG 60 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 3 2 2 83 10 43542892 43544541 TACATCGCCATGGACACAG 60 43544583 43544606 CTGATACTGGTAATCTATGGAGCT 60 NA Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 1 2 2 80 10 10992247 10992916 AAGAAGGAGCTATTTAAGCTGG 58 10992188 10992206 CTTGTTGCGATCCATTTCC 57 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000034495 1 1 2 80 5 17650897 17663138 CAACGTGCAGATAAATACTGAG 58 17650838 17650856 TCCTCAGGAATCTTACGGT 57 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000051244 1 1 2 80 12 11712757 11712778 ATTCCATCTTATGCTCTTCACC 58 11711291 11712717 CTCCTTGCTGAACCTTTCTG 59 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502 1 1 3 80 1 197545859 197549416 CGATGAGAGCTACGTTGAG 58 197545797 197545820 GAATAGGACTCGATTCTTCTTAGG 58 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 3 2 3 83 14 22734011 22734031 AGTTGACTTCAGCATACTGTC 58 22734074 22735539 GCATTCTCCTTATAGGAAGGG 58 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000020003 2 1 2 173 19 37204577 37204598 CCGAAATATGCACAACCTACAG 60 37206291 37207053 GGTTGTTCTGCATGACCTC 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 3 2 2 80 1 166624273 166624446 CAAGGAGACTTGGAGAAGG 57 166624489 166624508 CTGAAGTTCAGGGATGTAGG 57 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 1 2 2 87 7 67341727 67344075 TTTCATCTGGACCGATTCAG 58 67341659 67341677 GTATATCCACGGGTTGCAG 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 2 3 8 80 13 68709933 68710069 ACACTGCTCAGTTGAAAGC 59 68710112 68710131 TTACTCGGTCCATCTTCAGC 60 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 3 2 2 80 4 8177394 8178014 ACTATTCCAGAGATGAAGACCA 59 8178055 8178073 TTCCAGACAGAGCAAAGTG 58 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625 1 1 2 81 X 82644542 82644561 CCCTTGGATAACCCAAAGAG 58 82643431 82644499 CACTGCTTCCATAACAACCT 58 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000088197 3 1 2 85 14 76793195 76799192 AGACTTCAGTAAGAACACGTC 58 76799239 76799257 TGTTTAGGCTTGGTGATGG 58 NA Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 3 1 1 93 9 12406763 12406784 CCAAGATAGCTCTGATCATCAC 59 12409452 12409470 TCCTGAGTAGCTGTCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 1 2 2 80 8 97454816 97457083 TCTACTCCAGTAACTCCTGTC 58 97457124 97457143 CATTCTGTTCTCCATAGCCA 57 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176 1 1 2 87 1 101368289 101368385 GATATGATGAGAGGCCGGG 60 101368220 101368238 TCTCGGCTTCTTTCTCTGC 60 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160 2 3 7 80 17 57033679 57050874 CTACTCTAGCTCAGGTTTCTG 57 57050912 57050934 CTGAAGGTAACTGTACTAGAGTC 58 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927 3 1 2 82 12 18119744 18139327 AGTGGACATGGGATTGGTG 60 18119680 18119698 TCTGAACAGCATCCAGCTC 60 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269,ENSRNOT00000009084 3 2 2 80 7 29495057 29497809 TCATCATTGTGTTTGAGCACC 60 29494997 29495017 TTAGATCTTTCGGGAGGTCTG 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 1 2 4 80 7 143124233 143124988 TCTGAAGAAGGATGTGGACTG 60 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000045495 1 1 4 80 7 143124241 143124988 AGGCAATTGATGTGGACTG 58 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 3 1 1 97 10 84032658 84032676 CTGGAAAGCAGCATTTGCA 60 84033664 84033682 CCTTGCTATAGGGAATGCG 58 NA DesignNoJunction Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 2 2 2 83 3 22642328 22643276 AAAGAAGACTACTACAGGCGG 60 22643321 22643339 ACGCATCACCATCTCTGAG 60 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600 3 1 2 80 15 85943247 85946545 AAACCAGAAACTGGAAGAAGC 59 85943187 85943209 CACGTACCAACTTCTTCATAGTC 59 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 2 2 3 80 3 150050288 150050461 GATCCTCTGATACAGGGCG 59 150050226 150050245 GGTCTATGAGCTCTTGGAGG 59 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681 2 1 2 80 1 185514296 185514317 CATCTTCTGTGAACAAGACAGG 59 185514356 185515775 TCGAGCTGGTCTTTATTCTCC 60 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 3 2 2 107 9 14501676 14501694 ATACCTCCTTGCTGGATGC 60 14500323 14501607 AGGTGTAGAGACTGAAGTGAG 59 NA Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 3 2 2 80 13 90451831 90452416 AAGAACTTGAGTTCATCACGC 59 90451771 90451792 TGGCGTTGATACAATAAGTGAC 59 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000001667 1 1 2 80 12 16056071 16058169 TTCATAGCAGCTCACCCAG 60 16058213 16058231 GTCAGCATTGTTGTCGGAG 59 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000068328 2 1 2 80 3 162539859 162546011 CAGTAAGGATCAGTCAGAGC 58 162539798 162539816 ACAACATCAACAGGGTCTG 58 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324 1 1 2 85 3 162483787 162483805 AGGTATGACAAGCAGCCTG 60 162482281 162483738 CGGGAATGGTACTTCTGGG 60 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 3 3 3 80 5 117606774 117606795 GAACAGGAGTTTGTTTACAAGG 58 117605608 117606735 TTCTCCATAGAATCCCTCCAG 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405 1 1 3 81 5 117754340 117754358 AGTAACCTGGGATCTGCAG 59 117753144 117754296 GTGGTAAACACTTCTCCAGC 59 NA Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000003739 3 1 3 80 X 75167502 75167522 GTCACCAGAGGAAGTATATGC 58 75167268 75167460 CAATCTTTGCTTTGTGGCA 57 NA Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000035894 1 1 2 155 10 82864257 82864276 TGGAGAATAAGACCACATGG 57 82857125 82858268 AGAAGTCACACTTCCACAG 57 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000079698 2 1 2 80 10 17621127 17621145 AACAGACCTACAGATGGCC 59 17621186 17628035 TTCTATGGTCTCTATGTCCTGG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798 1 1 3 89 1 46871431 46873007 ATGCATGTGCCAAATGTCC 60 46873060 46873078 TCTGGAATTCTGCCCACTG 60 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000048141 2 1 2 80 3 112475265 112477173 GAACTTTGAACTGATAGACACG 58 112477214 112477232 CCGTAATGCTCCATGAGTG 58 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000033512 2 1 3 146 8 71036625 71036643 AACTAGGAGCTACCAGGAG 58 71035721 71036515 ATCTTCCTGGTGCTTTCTG 57 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 3 3 3 80 8 71046690 71048847 AAAGCAAGGATGGTTTGACC 59 71046629 71046648 GGTCTTCCATGATGAAGGCT 60 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718 3 1 2 81 5 99009516 99009534 CTGGACACTTTGAAGGCTG 59 99009578 99177730 CTCTGAGTTTGCACCTACTG 58 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396 1 1 2 80 17 52364496 52364514 GGAGGGAACAACCCTAGTC 59 52364433 52364458 CAGTTTGTCTCATAGATGACTTCAG 60 NA Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 3 1 1 68 12 12330327 12330345 TATCCTGCCAACTCCATCG 59 12322622 12322640 GCAGTATTCCAGGACACCA 59 NA DesignNoJunction Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 1 2 2 80 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864999 117865019 AAGACCTTGTAGAAAGCTTCC 58 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000078776 1 1 2 80 8 47694090 47695439 AAACAATCCTGGCTATCCCT 59 47695482 47695500 GTCTGCTTGCCAGATTTCC 59 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000078776 3 1 2 84 8 47694093 47695441 CAATCCTGGCTATCCCTCC 59 47695489 47695507 CAGTAGAGTCTGCTTGCCA 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000039954 3 1 2 83 10 65768652 65768671 AAGAAGAGCTGTGTAGTGGA 58 65768717 65768814 AATACTCACCTCGGAAGGC 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000080824 3 1 2 81 7 31822356 31823608 CGTGGAAGAGCAGTATAGCT 59 31822294 31822314 GCCACAGCTAATAATTCCTCC 59 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 1 2 3 115 17 53963269 53965584 AATTACCAGGTAAACAGGTGAG 58 53966398 53966419 GGCATTATGCAACATTTCAGTC 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043 1 1 2 90 5 169576687 169579810 CATTGAAGAGACTGTGCGG 59 169576615 169576633 GATCTCCATGGAGCTCCAG 59 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 3 2 2 80 17 54035548 54036079 ATCTACACTGTTCAGGAAGGC 60 54035488 54035510 ATCCCGTATGTGATCTACAAGTC 60 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528 1 1 3 80 3 8635549 8635570 AATTTCATCTGAATGAGAGCGG 59 8635611 8645854 GGAGCTTCCTCTCCTTTCC 60 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 1 2 3 80 19 49462516 49462536 TGCAGAGCATAAACTTGAAGC 60 49462578 49465010 GACTTGCACACTTGTCCTC 59 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000082652 2 1 2 88 X 112281116 112281134 TACCACCACTGTGACATCC 59 112281182 112290820 AGTAGTAGATGGATATTGGCTCC 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 3 4 4 81 12 19962770 19963220 GAGTGGAGCAACAGATTCC 58 19962707 19962725 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 2 5 5 82 1 257584946 257721301 AGTGACATGGAAGGTCTATCTG 59 257721339 257721362 GATGGAAATGTACGAGATATGTCC 59 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 1 2 2 110 6 1454448 1454466 ACCAGGTTTCTACGTGGAC 59 1452779 1454377 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896 1 1 2 81 12 11223692 11223710 GAAGACATATCACGCCCTG 58 11223752 11224486 GATGATTTCCTTGAAGACTTCC 57 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 1 2 2 80 1 197915474 197916322 CCGATATGTCTAATGGATGGGA 59 197915415 197915435 TGTCATAGGTGGTCTTCACTC 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371 3 1 3 81 1 150504411 150504432 ACTCAGACAATGATGGAAAGGT 60 150504472 150505213 ACAAGGTCTATATGCCATGCA 60 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 2 2 2 80 18 4077883 4077902 ATAACTCATACGTCCAGCCA 59 4077945 4078981 TGCCTCTTGCTACAGTCTC 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 3 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 2 2 6 80 5 47931467 47933461 CTACTGAAACAGCCTATTCCA 58 47933501 47933521 CTTGTCTCCAACTGAAATCCA 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 1 4 8 61 20 1983257 1983275 CCTGGACGGATATGGACAC 60 1982465 1982486 GGTCAAATAAGACTTGGAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022068 1 1 2 106 1 48274077 48282118 CATCGTCACTGAGGTTTGG 59 48282185 48282206 CAACATGGATGTATAGTCTGGG 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644 3 1 3 99 7 143323593 143324330 CAAGAACAAGTACGAGGATGAG 59 143323405 143323423 CACCTTGTTCATGTAGGCC 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252 2 1 3 101 12 52356873 52358700 TGACAAAGGTTCTGGGAGAG 59 52358764 52358782 AAAGACTCAGTGCTGAGCT 59 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000074985 1 1 2 84 1 81343480 81343500 AGAGACGTCCTCATTGACTG 59 81344478 81344496 TGTAACTCCGGTTTCCCAG 59 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000013026 3 2 3 81 6 107315171 107315192 GTAGAGGTTGATGAGTCAAGAG 58 107308310 107315132 CTTTGAAGAACTTCCTTTCAGC 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000086297 3 1 2 94 4 116580362 116580511 AATTGTAGGGAACATCATCTGG 58 116580289 116580308 CTCTGTGCAGTTCAAGATGG 59 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 1 2 2 80 18 61699070 61699092 GACTTCCGTAATAAACCCTATCC 59 61697278 61699032 GCCATTATTGATCATGACCGT 59 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 3 2 2 80 18 61699075 61699094 GGGACTTCCGTAATAAACCC 58 61697280 61699035 CATTATTGATCATGACCGTCAG 57 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 2 2 2 81 7 143137700 143137718 AGATCAAGGCTCAGTACGA 58 143137403 143137655 ATTTCCTCACACTTGGTGC 58 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 3 2 3 80 13 77626389 77637133 ACTACCCTCACAGATCTGG 58 77637177 77637195 GGGAATGCTTTGTTTCGAG 57 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032 2 1 2 128 8 49697044 49697666 CTAGTGCAGCTGAGAAGGA 59 49697862 49698661 ACCTGCGACTTAGGATGAG 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000080338 2 1 4 80 1 189393394 189393415 ACAGCTTATCAAAGAGCTACAG 58 189393454 189394992 GAAACAAACTCCACTTTCTGG 58 NA Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 2 2 2 80 17 10107680 10107700 TGGAGAAGACTCTGTAGATGG 58 10107741 10112286 TCCCTATTATCAACCTGCCT 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000044195 3 1 4 83 1 265553269 265554220 TCAGTGAAACATTAGCTGCC 59 265552626 265552645 CAAACTCATCCTCTACGCTG 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 1 2 3 80 7 143493426 143493810 CTGAAGAAGGATGTGGATGG 58 143493365 143493384 GTTGATTTCATCAGTCAGGC 57 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613 1 1 3 85 7 143491856 143492501 AAGAAGCAGAACACCAACC 58 143491789 143491807 AATTTGGCATCTGCATCCT 58 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489 1 1 2 81 1 81242991 81244682 GGACATCTCCAAGATGCAC 58 81244727 81244745 GATTCTCTTCTCCAGGGCA 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000067866 1 1 2 86 10 46613802 46613820 GGTCACCTATGAGGATCCC 59 46613291 46613755 CCATACATTTCCATTTCTGAGC 58 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 1 2 2 88 17 31495006 31495776 CTTTGTGTTCGGTCAGAGTG 59 31495827 31495845 CATCCAGGACAGAGTCCAC 60 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255 2 1 2 85 15 4883083 4883968 CAACTGCAAAGATGAAACAGAG 59 4884009 4884032 CTCTGTCTTCAATCTTGTAGTGTC 59 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291 2 1 2 83 7 35383431 35531259 AGGAGTGAAGGTAGAACGC 59 35531306 35531324 TTGAGGTTGGTGTCTGACC 60 NA Rattus norvegicus 81 Zfp663 ENSRNOG00000031478 ENSRNOT00000047890 1 1 1 60 3 162034137 162034155 TACAGGCACCTACAAGCAG 59 162033666 162033686 CCAACTTGCATATCAGCTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721 2 1 2 80 11 65786081 65786099 TTGCAGAGGAACAGATGGG 60 65782662 65786037 TGCCTGAATAGGAACCGAC 60 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 1 2 2 80 8 6057026 6057045 AATCAAAGGCCAAGAGTTCG 59 6056210 6056987 GAGTCTGACGTAGATAATAGCTG 58 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 1 2 3 80 15 60745331 60746563 CTCTAAATCAGAGTCACCATTCAG 59 60745274 60745295 TGAAATCAATTCTGAGTCCTGG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000004972 3 1 5 80 X 71310804 71310824 ACTACTTTCTCCAAGAAGCCC 60 71310513 71310534 CACAACTGAATCGGTGTTCC 60 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 3 2 2 83 14 13056815 13056836 AGTTTGGTATGGGAAAGAACTG 59 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973 1 1 2 81 5 48303574 48303592 TGATGGCTCTTGTGGAGAG 59 48303636 48311954 TACAAGTGACTTGGCTTGGA 59 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 3 2 2 125 14 86479834 86613016 TAAGCCTGTCTGGTATGCTG 60 86613103 86613122 AATTTCTTGAAGGCGTCCAG 59 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000087695 1 1 4 101 20 2505244 2505262 AACTTCAGAAGTGCCTGGA 59 2505326 2509631 GCTTCTCTTCCTTGAGTTCC 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884 1 1 4 86 20 2501331 2503564 CCGGGAAGTTATAATGGCAG 59 2503613 2503631 ACCTGCAAGTTCTCCAGAG 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000064203 3 1 2 80 3 57021828 57021848 AATACACAAAGAGCTGGACCA 60 57020981 57021791 GAAGGATATTTCGTATCTGTGTCC 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000083171 2 1 2 80 3 57021471 57021491 CAGATTGTGAATGCCTTACGA 59 57020982 57021432 AAGGATATTTCCTGGCTTAAGG 58 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 2 2 2 82 5 155660815 155660833 ACTGTTCCACACTGGACTC 59 155666587 155666605 GATGGCGTATACAAAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 3 2 2 83 5 155666654 155666672 GATCTGGAGAAGTGTGGCT 59 155666806 155666824 GATGTTGTCCGAGCATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100 3 1 2 81 1 100319751 100319770 TTACACAGTGGGCTCTTACG 60 100320224 100328073 CTTGATGATGTAATCACTCCCTG 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227 1 1 3 80 1 221802454 221817846 CTGCAGTGAAGAGGAACAC 59 221824653 221824671 TCGGAGAACAGTAAGGACC 58 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 1 2 2 80 1 178154690 178154711 GGATAACACCAGATTTGTTGTG 58 178151809 178154649 CCAGATCCAAACATCCTGC 59 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000013353 3 1 2 101 7 117136838 117140136 ATAGCTCTCCAGGTCAATGG 59 117136756 117136775 TTTCCATTTGTCTCCTGCTG 59 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 1 1 1 60 7 34121490 34121511 AGGGCTCTGAGATACTATTACG 59 34103041 34103059 CAAACTTCTGCCCGATCAC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 3 2 4 88 20 3113950 3113968 CAGGACCTACTTAGAGGGC 59 3114019 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000078306 3 1 2 189 5 173340629 173344357 GGGCAACTATCGATGAGGT 59 173344913 173345156 TGCAGACATTCCGAAATGAC 59 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265 3 1 2 98 6 110671811 110671829 GTCCAGGATCTGGTGACTC 59 110666922 110671752 TAAAGAAAGCATCCAGTGTCTG 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 3 3 3 80 17 66447368 66447389 TCACTTGTCTCCTTATTTCCTC 58 66447428 66449232 TAAAGATGGATGTGGAACCTG 58 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000064266 1 1 2 100 5 172303385 172303497 CAGTCCTCTTAATGCGCAG 59 172303561 172303579 GATTCATAGGGTGCATGGG 58 NA Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 3 2 2 80 4 157455005 157455318 TGATTGGGAACATGGAGCA 59 157455361 157455380 TGTTGGAGTAGGAGATGACC 59 NA Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 2 2 2 80 1 191917425 191917443 AGATGTGCCAAATTCACCA 58 191911850 191917384 AGACACATACTTGGTAAAGAGG 58 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000051754 1 1 2 144 7 117470970 117470988 TCTACAAGAAGCATGCGGA 59 117471560 117472112 GATCCCTGGCCTTTCTGAG 60 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000058548 2 1 2 94 17 63265506 63265524 CAAGGACAGCTCTCATCTG 58 63267340 63278532 CCTTAGTTGTTGGGACCTG 58 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000028406 1 1 2 82 1 221298892 221298910 TATACCTATGCCCAGCTGC 59 221297895 221298846 CCGAAGATGTCCTTCACGA 60 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000044278 2 1 2 80 6 27373614 27373632 AGACAGATGGTCTGCTACC 59 27373676 27378385 TCTCTTTGCCTTTGCTTCG 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 1 3 4 80 8 70175533 70175971 TGAACGTGTTAGACTCCCA 58 70176009 70176033 GTCTAAGTTCAATGTAGAAGTCCTC 59 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000080109 2 1 2 80 7 141389521 141389541 GATGTTGCATGTCATCTGGTC 60 141387759 141389480 TCATCCTTAGACACCTTGCC 60 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000031149 2 1 4 80 12 14613491 14613515 TTTCCTGGGAGGTGTATAGGA 60 14613431 14613451 GTCCTTGGATCTTGTACTCGT 60 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 1 2 2 83 12 13430076 13438069 TATCAAAGGGCCCACTGTC 59 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA InUTR Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320 1 1 4 93 18 6770065 6770083 AGACTTGATCCTGAAGCCC 59 6767982 6770009 TGGAAATGACTCTCCAGACG 60 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809 1 1 3 80 1 247251526 247251545 TGTTCTTAAGGCAACAGCAC 59 247251587 247251867 CGTCGCAAGATCTTTAGCTC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521 3 1 2 82 6 53524766 53547575 CTTCTAGGAAATGAGCCCG 58 53524702 53524720 TTCTGTAAAGAAGCGGCTG 58 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 3 2 2 80 1 31723862 31725708 GATCTAGAGCAACATCTGAATGAG 59 31725746 31725765 GGTGACACAGATGATGTCCA 60 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 2 2 2 80 7 25972088 25972111 CTCCAGTTCTCAGCTTATTAACAG 59 25972147 25980642 GTGGTAACACCTGATCTTTGAG 59 NA Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000037399 1 1 2 80 3 11407001 11407019 TGTTCACCTCTAGCAGTGG 59 11407063 11407887 GCATGCTGTATGACTTGCT 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311 2 1 2 99 1 104149448 104149466 CATAAGACCTGCTTTCGCT 58 104147494 104149385 TGGCATAGCAAACTTTGCA 59 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 1 2 2 80 1 100892443 100892652 CTTCCATGACAGCATCACC 59 100892695 100892714 ATGTGGAGCATTCTTTCCAG 58 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000083336 1 1 2 101 1 100893273 100893291 TCATTGACAGCTTCCTGGG 60 100893356 100894612 AGAGGGTTTCCTGCATGAC 60 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000083336 2 1 2 103 1 100893271 100893290 TCTCATTGACAGCTTCCTGG 60 100893356 100894612 AGAGGGTTTCCTGCATGAC 60 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000025013 2 1 2 81 19 29599638 29642357 GATTGCATGAGGAGCAGAC 59 29599575 29599594 GCTTGTTATCGCTTAGGCAG 60 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312 1 1 2 84 9 10262539 10272830 TCAACAGCCATCTCCAGTG 60 10272878 10272896 TAGTGGTTGTACAGGGAGC 59 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430 1 1 2 80 1 101724673 101773165 ATGGAGGATCAGAAAGCCAG 60 101724612 101724631 GTGTATACATGCCGACTGGA 60 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 3 2 2 81 10 85993694 85993712 GAGCGTGATGAGCTAACAG 58 85993539 85993649 GGGCTGTGAATACACTGTC 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669 3 1 3 90 1 215270232 215271665 AGTCCCAGCAAGACTATGC 60 215266466 215266485 ACTTCTTCAAAGGTGGATGC 59 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601 2 1 2 116 1 53186115 53186133 GAATGGGATAAACACGGCA 58 53186211 53189003 TTGTAGTACACTGTTGAGGTC 57 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 3 2 3 85 2 196594325 196608508 GCTAACCCAGAAATGACATCAG 60 196608554 196608572 CCTCCACCTTGAATCCCAG 60 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893 3 1 2 82 1 5248348 5250567 TCCTGCTGATAACTCCCTG 59 5250608 5250631 CTGTGTACGGATTATAGTAGAGGT 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334 2 1 2 108 18 55810036 55810057 GAATATTACCAGCAGCTTGCTC 60 55810126 55811808 CAAGGCTGTACTTGTCCGA 60 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000083055 3 1 2 145 1 163114615 163114636 CAGAATTACTCAGCTCTGAAGC 59 163103735 163114509 CAGATATCCTGCAGAGGCC 60 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000089456 1 1 2 80 1 256664564 256664583 AATGATGTAGTTGGGACGAC 58 256662124 256664522 CGAGGATGAGAAATCTTCCA 57 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000089524 1 1 2 80 3 97389317 97389335 CAGCCTTCCAAAGAAAGCA 59 97389377 97390794 CTTTGCTTTGAGAAATGGCTG 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494 1 1 2 80 3 97419210 97419228 TGGGCTTACCAGAATGGAG 59 97419271 97431599 GCAATCATCCAGCAACTCTG 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000088892 3 1 7 80 1 102915703 102929766 AAACAATCCCGATAAGGAACAG 59 102930385 102930403 CCCTTCAGGTTAAGGACCT 58 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 3 2 2 86 14 18660373 18680877 TAGTGGCTGCAGGTATTCC 59 18660305 18660323 GTACGTAGTTGATGCCCAC 58 NA Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000082139 2 1 2 80 15 27724807 27726396 TCTTGCTACAGGATTCTTTGG 58 27724747 27724768 ATACGACACTTCCGATAATTGC 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 1 3 3 92 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671231 52675780 AGTGCTCTTCTCGGTAACAC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 1 3 10 88 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248511 117248529 TACCATCAGCCTTGTCCAG 59 NA Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 3 2 2 80 6 26256994 26257012 TCGAGGAACCTTGGATGAG 59 26255680 26256950 CGGCTTTCCTCTGTAACTC 58 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 1 2 2 88 17 80655066 80655084 TTTGGATCTTAGAGGCGCC 60 80653567 80655014 CACAGAACAGTTGGGTGTG 59 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 3 2 2 90 17 80655174 80662341 CAAAGAGTTTAGCCTGCGG 59 80655102 80655123 GGATAATTAGCAGGGTAGTTGG 58 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 1 2 3 80 9 65704155 65704174 ACTCAACATTCACCTTCACC 58 65702277 65704112 ATGGGAAACCAGAGCTAGG 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 2 1 3 90 20 31273166 31275520 GGAATCACTGGCTGATGTG 59 31276851 31276872 GTTTAAAGGGTCCTTTGTAGCA 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 1 4 5 80 9 43834355 43834373 AGTATCCAGCCAGGAAAGG 59 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905 1 1 2 108 2 251024317 251024335 AAAGTTGGAAGAAGCAGCC 59 251024406 251027840 TCCATCAACCTTCTCTAGCT 58 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 1 2 2 80 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277527 171278573 TTCAGAACTTGCACCTGTG 58 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 2 2 2 85 3 3791478 3792895 AAATACCAGTCCTCCAGGA 57 3792944 3792962 AAATCCTCATCAGGCATGG 58 NA Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 3 2 2 81 1 205663149 205669654 GACGGAAGATGGTTCACTC 58 205663086 205663104 AGTGGATTTCCTTCAGGGA 58 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 3 2 3 80 9 10467473 10470829 CTTAAGAAGGCCATTGAAGAGG 59 10467414 10467434 CTTAGGCATCTTCTTGTTGCC 60 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000088884 2 1 2 95 13 90063457 90063477 ATGACACAATCCCTTACACAG 58 90061289 90062589 GACTCTTCACCACTTTGGG 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000083528 1 1 3 80 14 114540309 114540381 AGAATCAGATGGAAGGAGGG 59 114540248 114540266 AAGCTCCATGAACTTGGTC 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000079543 3 1 2 80 10 14527319 14527337 GTGCAGCTTCTGAAAGAGG 59 14527379 14527538 CTTTATCATTTGCTTCGTGGC 59 NA Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 1 2 2 80 2 236420650 236420668 GGAGGTACAGCGGTTATCC 60 236418905 236420606 CTGTACCCTTGGAGGACTG 59 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768 2 1 3 112 11 71354065 71354083 CTGAGTGTGGAACTGAGCA 60 71352665 71353338 TCATATGTTGGCTTGTGAGTG 59 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000059181 1 1 3 84 5 78516514 78520943 AGAGGAAGAAACTTCACCCT 58 78520990 78521008 AAGCTTCTATCCTGGGTGG 59 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744 3 1 3 99 5 78446052 78446070 CCTAGGAGGAGAATCAGGC 59 78467491 78470064 CTTCTATAACGTGTAGCAGCAG 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000024793 2 1 5 80 19 43257986 43258890 CAGAGGAAGAAGAGAAAGAGGA 59 43258929 43258949 TGGTGTTATCCACAAGATTGC 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 80 19 43234683 43234701 AAGTGATTGAGCAGATGGG 58 43234742 43267700 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566 3 1 5 89 19 43217284 43217302 GGAATTCACTTTCCCTGCC 59 43224101 43225359 TAACAACAGCACCATTGGC 59 NA Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368 3 1 3 80 3 11230401 11230420 AACAAGGGCTACTCACTGTC 60 11230460 11231037 GTAAGACCTTTCATTCCTGACG 59 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000012340 2 1 2 123 10 86680364 86684099 AAGCTGCTGATGAAGGAGAG 60 86684185 86684203 CATGCATTCCGAGAAGCTG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 3 1 1 60 15 23604176 23604196 TGCTTTATCTTCTCCAGTCCT 59 23603586 23603604 TCCCAGCGTACATCATCTG 59 NA DesignNoJunction Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 1 2 2 80 9 80154621 80155296 CTACAAGAGAAAGCAGTGCA 58 80154560 80154579 AGCTTCATCCCATACTTGTC 57 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000067886 2 1 4 96 16 23758973 23758991 TGAACATCGCTCATATCCC 57 23759049 23759396 ACCTAAACTCTCAAAGTCGAG 58 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000035722 1 2 4 80 4 85701164 85703849 CTATCCACCATTACTCTACGG 57 85703891 85703909 GGCGAATACTGTGTAGTGG 58 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869 1 1 2 81 12 8144286 8189822 GCATTTCTTTGGAAAGAGCG 58 8144224 8144243 CACTTCATCCCTGATGTTGG 59 NA Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 1 2 2 81 2 243147602 243148260 AGAAGAAAGAGGAGATGGAGG 59 243148303 243148321 GCTTAACAGGGACACAAGG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 2 2 2 80 17 77686401 77686420 AATCAAGTCTATCTGGGCGA 59 77680009 77686360 GCATGGATCTTGGACTTACTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000078830 1 1 7 80 5 166015897 166015916 GTTGATGCTATCCTTTCCCT 57 166012356 166015854 ATCAAGAAAGAGCCTGCTG 58 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000005858 2 1 2 80 6 44240077 44240743 TCACTGGTTTGCAGTATAGTG 58 44240782 44240803 GCAGTAGAAGATGCACTATGTC 59 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554 2 1 2 80 17 77605027 77605046 AAAGTACTTCAAGCGGAGTG 58 77605087 77605222 TCACTTATAGGCTTGTAGCCA 59 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 2 2 2 81 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352850 68352868 TGTCATGGTGAGTGTCCTG 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000051075 3 1 3 81 7 71065584 71069220 TTGGGAACACAGGACTCTG 59 71069262 71069283 TGTTTGTTCATCCACTCATTGG 60 NA Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 2 2 2 80 7 76093045 76096821 TCTATGACTACTACAAGGTTCCTC 59 76096860 76096878 TTTCCTCGTCTTCTTGGCT 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 3 2 2 112 20 45157447 45157465 TGCTCTTCATGTGCATTGG 59 45147741 45157371 GAAGAAGGAGAGGACCTGC 60 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000046229 2 1 3 113 9 81566950 81566968 ACCAGAATGCAAGGAGGAG 59 81567045 81628381 GTGTACAGGCTGTACCAGG 60 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601 3 1 2 80 1 188282803 188282821 GGAGATTACCCTGAAGGCA 59 188282864 188284266 GTAAGCAGGGTTCACATAGC 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000029600 3 1 2 81 3 13246341 13246361 TTCATGAACATGCAGAGTCTG 59 13245493 13246298 GGGTATCCACCTGTGACTG 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 2 2 5 96 18 79413332 79424851 ACATGTACAAGGACTCACAC 58 79424910 79424928 AAGAAGTGGACTACTGGGT 58 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925,ENSRNOT00000033672 3 2 3 80 4 85301255 85301273 AATGCCTGGAGAATGGGAC 60 85299689 85301212 ACTTCCTCTGCTTGTCATCC 60 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000091693 2 1 2 80 6 124596591 124596612 GTATGAGCTACTAACTGGAGCA 60 124583674 124596555 AAGATTCTCCTAGATATCTCAGCC 59 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000091963 1 1 2 177 10 47812990 47824470 CTACCACGGCTCTACTTCC 59 47811274 47811292 TTCTTCCAGAGCCATCTGC 60 NA Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 1 2 2 87 1 36304885 36307703 TGGAGAAGAGTGAAGGTGC 59 36304816 36304834 TTCCACTGTGAGACTCCAG 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000082482 2 1 4 89 1 226791118 226791730 GAACACTGGGTGACTTGTG 59 226779522 226779540 CCTGACACTTGGAGTTGGA 59 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711 1 1 2 80 12 22102866 22103540 CTACTTCAAGCCAGTCTGTC 58 22103583 22103601 TGGATGAATGGGAAGGAGG 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 3 2 7 80 2 186117957 186122502 CTCCGTTATCATGAACACGG 59 186117896 186117914 GATGATTTGCTGCTGTCCC 59 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 3 2 2 92 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425224 159425243 TCTCATACCTAAGCACCGAC 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673 2 1 3 109 20 3344957 3346157 TTCCTATGTAGCTCAGGTTCC 59 3346225 3346246 GGTATTTCCAAGGTTCGTTCTC 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000047737 1 1 4 80 16 6156340 6156358 GAACACGTTTGACTCCCTC 59 6150104 6156297 TTCTCACTGTCAGATGGGTC 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459 1 1 4 186 16 6189094 6189350 TATGTCAGACCCTACAGCC 58 6187654 6188946 TCGCTATATCTTGAATCTGCG 58 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000084985 1 1 2 140 1 79954827 79957197 CATCAAAGCCACCAACCTG 59 79957301 79957319 TACATGGTCAGGGACTGGA 60 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100 2 1 5 136 3 2264990 2266784 AACTATGCAAGCGAACTTCC 59 2267434 2267452 AGGTGTCGGCTTTCATAGG 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000080844 1 1 3 147 18 65388686 65388762 ATCAGAGTCTCCTCGGAGG 60 65388873 65389350 TTCTTTGTCTGCACCTCCA 59 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 1 2 2 80 12 22157214 22157864 TCAAACCAGGTGATCATGC 58 22157906 22157926 CACACTGACAGAGTCATATCG 58 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745 3 1 2 133 8 71509764 71533176 GACTATTGCTGGAGTTGCC 59 71509649 71509668 ACTAGGGTTCCGTAAGTTCG 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000080442 2 1 2 83 1 215215864 215217281 GGTAAGGCTACCTCAGTCC 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 3 2 2 81 7 53642212 53645188 TTTCTGTGCATGGTTTGCA 59 53645230 53645251 AGCATGATTTGCAGTAGATCTC 59 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011 2 1 2 87 7 53648480 53649031 CTACTGTAAAGGGTGCTACG 58 53649080 53649099 CTACTGAGCATGAACAAGGG 58 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562 3 1 2 93 10 51696409 51696427 TTACTTCCTGGCTTCCTCC 59 51693131 51696353 TAAACCAGTCATCTGTGCAC 58 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163 3 1 2 80 15 3974337 3974358 AGAGCCTATTGAACAAGAAGTC 58 3981769 3985014 TTTGTGGCTCCATTAGGTG 58 NA Rattus norvegicus 81 Ephx1 ENSRNOG00000003515 ENSRNOT00000085279,ENSRNOT00000004780 2 2 2 80 13 99273801 99273821 TTAGAGAAGTTCTCCACCTGG 59 99272349 99273759 ATCCAGGGAGAACTTCCTC 58 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988 1 1 2 80 11 81331677 81331696 TCACCTACGACCAGTATCAG 58 81331528 81331634 TAGAGAAGGAAGCCTCCAG 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000022331 1 1 4 89 1 200658081 200692395 TTAGAACCAGAAGGAGCACC 60 200658011 200658029 GAACTTCACAGTGTTGGCG 60 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 3 2 2 80 1 221743901 221743921 AGAAGATGAACCTCTTCATGC 58 221743960 221744084 ATGTTTCTGATCTGTTCCACTG 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000066634 2 1 2 80 20 46236741 46236765 GAGTTCTTGGAATGGTCAAGG 59 46236805 46236825 TTATCCAGATAGGGAGTTGCT 58 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 2 3 3 80 6 129631681 129632371 TAAGAAGCCTTAATGGTTGCAG 59 129632409 129632430 TCAGAGTTAACCTGAAGTTGTC 58 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000071076 2 1 2 80 11 84522584 84522603 AAGGAAACCTCAGAAAGGAG 57 84527816 84533854 CAGCTATGATACCTGTCACAG 58 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000017927 1 1 3 80 4 100281141 100284514 GCAAACCACTACTGGTCTG 59 100284557 100284576 GACTGTGTAGTTCCAAAGGG 58 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000077172 1 1 4 97 7 117711147 117711165 GATGAGATGGACCAGAGCC 60 117710666 117711087 CAGTGAACATCTGTGTAGCC 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000080419 2 3 12 101 20 3358182 3358200 CTTCTTTGCCCATCAACAC 57 3360457 3360680 ACCTTCAGGAATTCTCTGTC 57 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 1 2 2 80 1 198411417 198411929 CATCTGCACAGTTCTGTGG 59 198411973 198411991 GTAGATTCGAAGCACAGGG 58 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228 1 1 2 134 10 47724291 47724554 AGATCTCGGAGAGCAAACG 60 47723433 47723451 GACAGATGGAGCAGGTAGG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000041418 2 1 3 110 9 111107828 111107846 TTTCTACCCTGTGGAACAC 57 111107918 111108466 TCTTTGAATCCGATATGGGTG 58 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305 1 1 2 80 10 11098907 11099456 GTGGCGACTTAAGTCAACAG 59 11100515 11100533 ACACCCTCCTGTACTTCCA 60 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 2 2 2 80 3 114370883 114370905 CTCAGTACAAGAACAAACGTCTC 60 114370943 114371521 TTTCAGCCTTCACAGAAATCC 59 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 3 2 2 80 7 126661147 126667200 CTGTCATCACAGACACCCT 59 126667244 126667262 ACTCATCTGTACTGGTGGG 58 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015 1 2 3 177 20 3731568 3731696 GACAAGAACCTCATGCTGG 59 3731248 3731428 TCAGGGAGCCTTTCATAGAC 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 1 2 3 99 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865901 120867151 GATATGTCCGATAAACAGCGG 59 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 3 2 2 82 8 107638194 107638212 TACTCTGTCACCGACAAGG 59 107636536 107638149 AATGACTCCCTGTCCTTGAC 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000006773 3 2 4 83 7 51431864 51431882 CTTCCTTTCCAGCACAAGC 60 51431432 51431819 AAACGATTTGAGGTACTGCTC 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070 3 1 3 100 10 86383148 86383645 AAGAGGATTGTGGTCTCGA 58 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949,ENSRNOT00000080562 1 2 5 80 11 81426444 81426464 ATGCTAACGTGTACATGAGAC 58 81424323 81426404 TCACAGAAATCATGTCTAGCG 58 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 2 2 2 80 1 147808346 147808365 AGACAACAAGCACAACACTG 59 147808406 147884089 TCTCTTCCTGGACTTTAGCTG 59 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000090183 3 1 3 151 14 34760886 34760906 CTCTGGGAAAGACTATGTTGG 58 34761018 34786348 CTCACAGTTCTTCAGAAGCT 58 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 1 2 2 80 10 109972710 109973948 TTCCCTGAAACCCAAATATGC 59 109972522 109972541 CCACGGCACAGATTAAACAC 60 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 2 2 2 80 1 78040220 78044909 ATGACGAGACCATGAAGACTC 60 78044950 78044969 GCTCGATGAAGAAGTTGTCC 59 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396 1 1 2 81 1 78053580 78059666 CCCTTCGAGACATCAACCA 59 78059711 78059729 CCTGTTCCTCCATGAGCTC 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680 3 1 8 81 6 127946753 128075356 ATGGCACACTAGGAGAGGA 60 128075401 128075419 ATGGAGGCCAATGTGAGAC 60 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 2 2 2 80 15 57166039 57169058 GTTCGTATAGTACAAACAGGCTC 59 57165981 57165999 CACTAAAGCGCTTTCCTCG 59 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888 1 1 2 154 13 103157825 103157845 TCAGTTCGGCTCCTTTCAG 60 103171317 103171335 GCTCTGTTTCTTCCCATGC 59 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000082855 2 1 2 83 11 87061771 87061790 GGTGTCTTGGCTCTAGAGTC 60 87061836 87063144 CTTGGAACAACCTGGTCAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 3 3 3 117 19 9774376 9777316 GGAACATGACATTGAGACGC 60 9774070 9774297 GCACAGCTTGTGATTGAGAC 60 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000064250 3 1 2 95 18 61261684 61308859 CAAGGTTCACAAGAACATCTG 58 61308915 61308934 ATCTGGTATGTCAAACGCTG 58 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 1 2 2 80 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384458 148384562 CATGATCTCCTTCTCATCGG 58 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000042506 1 1 2 121 10 72171210 72175220 CCTTTGGGAGGATGTTGGA 59 72171107 72171126 CTGTGCTTTCGAAGATACGT 58 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000029046 1 1 2 80 X 70377000 70377461 CCATTACCACTGTTGTTGGAG 59 70377502 70377521 CAAAGTACTTTGCCACGGTC 60 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763 3 1 3 82 14 34561661 34561680 CCCATTCTTCCTGCTTTGC 60 34561597 34561615 CCGAAGACTATGGACCCAG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 2 1 3 80 14 34561647 34562171 GATACAAGGCAAGAAGCTGG 59 34561586 34561604 TCGAAGAGTCTCCGAAGAC 59 NA Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 3 2 2 80 8 59605066 59605084 TGGCTAATGTGTCCCATCC 60 59604899 59605024 TCTGGTTTACTTCATCCACCT 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138 2 1 2 80 1 1773348 1774172 AATAACCAGACCCTGTCCG 59 1774216 1774234 ACTGCTATAGGAAGGGCTG 59 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000081244 3 1 2 86 4 86629718 86629737 AGAATTCGAGAGCAACTCTC 58 86606563 86629670 TTATATTTCCTCAGCCCACG 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000007187 2 1 4 80 10 18942463 18942481 TAAACTCATCACCGGGACC 59 18574678 18579601 AGATCATCCTCGATCTTGTCTC 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 2 2 2 163 4 56406869 56411704 GTGTAGAGTGATGCGAGAC 58 56406435 56406743 CCACTATTGGTCTCTTCTGG 57 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301 2 1 2 97 5 169301416 169303652 CATCTTCTACTGGCAGCAC 58 169301337 169301355 TTTCAGACTCTTGCCTGCT 59 NA Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 1 2 2 83 12 24148710 24148728 TTCTACTCCTGGTAGCCTG 58 24148982 24149000 AAATAAAGGTCACGCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000080068 1 1 2 80 12 22965194 22965214 GAGAAGACTCACAGGTCCAG 60 22967754 22967772 TCACCTTTGGAACCTGGAG 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 2 2 3 88 8 117769893 117769912 GAAATCCAGGACCACTACCC 60 117769963 117771862 TCTTCATAGGACTCGCCCT 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 1 2 4 63 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139592 81143905 ATTCTTGCCTCCCACTGAG 59 NA DesignRelaxed Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021114 3 1 5 80 1 259446804 259448457 TGAACAGAGACACTCCTGAG 59 259446743 259446763 CAGAGTTCTGCTGGATTTCAG 59 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000004078 1 1 2 80 13 50142074 50149545 GATTCAGACTCAGATCAGAGTG 58 50149586 50149604 ATGGAGACCTGGTTCTTGG 59 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000091712 3 1 2 141 19 55904859 55904877 AGCTGACTCCTGGATTCAG 59 55905728 55907875 TTAGCAGTTCCAGCAATGAC 59 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814 2 1 2 81 10 72371769 72371788 GAACTGAAAGACATGGTGGT 58 72369859 72371726 GAGTAAGATGGCCCATAGGA 58 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000083028 2 1 2 86 5 149056342 149060395 TGCTTACCTGGTCATGAGC 60 149060445 149060463 ATCTTGGAGAACCTGCAGG 59 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000086061 1 1 2 102 7 12274813 12275364 GATGATTGTGGCACTGCAG 60 12274729 12274747 TAAGTGAGTGTTCTCCGCC 59 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 3 2 3 90 X 70565953 70566269 TTCAATGAATTCCTGTTCCGC 60 70566319 70566339 ATGCATATGTGACCAGGAGAG 60 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 2 2 3 131 4 51930811 51936047 GTCTTTGGTTCCGGTAACTC 59 51917546 51930720 GAGCAATAATCAGTTCCTTTGC 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 1 2 3 129 4 51930810 51936045 CTTTGGTTCCGGTAACTCC 58 51917546 51930720 GAGCAATAATCAGTTCCTTTGC 58 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974 3 1 2 85 16 32833572 32833591 CTTCGTCGATAATTCAGCCC 59 32832510 32833527 TCTGGAAGACTAAGTCCATCTG 59 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000015516 3 1 2 84 6 127651198 127651216 AAGATGCAGCAGGTAGAGG 59 127649637 127651150 GCAAATCCAACAGACTGGG 59 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033 1 1 3 80 6 28524558 28524578 GGAAAGTTAAACGATGTCAGC 58 28524618 28530151 GTAGAATTCATTTCGGACAGC 58 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 2 2 2 81 1 74994096 74998985 TGAAACAACTGTGGTACTTTGG 59 74999023 74999045 GTAGCTGAGGATTCTGTTATTGG 59 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000038973 2 1 2 80 7 98519114 98520746 CTGGCTGTACTGAAGATTTACG 59 98520786 98520805 GAGTTCAAAGGTCTTCACCC 59 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077 2 1 2 89 7 98432523 98432541 TTGGTCCTCACCAACAAGG 60 98437262 98437773 CTGCTGTTGCTCTATAGTTAAGG 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000090576 1 1 3 88 3 21850597 21850617 CTATCCTCACAGCATGGCA 60 21850526 21850546 TCCACCAGTTTCTGAGATGAG 60 NA Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 3 2 2 82 3 120177346 120177364 CTGTTGGGAATGGAAACGG 59 120179048 120179836 GTTCTTTGCCTTTCTGAAAGC 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000089473 3 1 2 80 6 93505996 93507324 TGGAAGACAGAGGTACTCCA 60 93507364 93507385 CCAGTCTGAAGAGTTTGAAGAG 59 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 2 1 1 109 4 108301641 108301660 CTGAATGGAGGTTGTCACTC 58 108302007 108302025 CCGAGTAGCAGGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000083181,ENSRNOT00000079694 2 2 3 81 2 240642203 240642901 AAGAACTTAGTGATTTGGCCC 59 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000064780 3 1 3 90 X 142129522 142164077 CGTATTCAGAGCCTCAGCT 59 142129450 142129468 TCAATGGTTCCATCTGCCT 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 2 2 2 80 6 135021644 135021663 TCAGCGAGAGGATCAAACAG 60 135021705 135021871 CGTGGATGTTCTTCAGTTCC 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 3 3 3 80 12 25478033 25478372 AACACTAAAGCATTGCAGTCC 60 25478413 25478432 CACAGTGACCTCGATTTCAG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 3 3 7 98 15 34668455 34668474 AAACACCCAGGTCATCTCTG 60 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 1 2 4 80 X 115589747 115589766 GACACAATGCTTTGACTGGA 59 115589808 115591046 CACCAACCTCTTCGATTCTC 58 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000085465 2 1 3 81 20 35260893 35263459 TATGAATCAGGACAAGGCCC 60 35260831 35260850 ATGGGCAATGTAAACATCCC 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 3 2 2 80 17 81222924 81222943 TGAATACTGCTGAGGACTGG 59 81222985 81233697 GACAATCTTTAGGCCCTGTG 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166 1 1 2 84 4 109474604 109475500 GGGTACAAGGTGAACAATCAC 59 109474538 109474557 TAGCAATAGGAACCACAGGC 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 2 2 3 80 9 95091554 95092576 AACTTCCTCTCAGCTGTTCC 60 95091493 95091515 TCTTCTACTATGACTTCCAGCTC 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 3 3 3 80 1 82558633 82558652 GCTGAAGGAGAAACTACGAG 58 82558253 82558591 CCAAATTCTCCTTCTCCCAG 58 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 3 2 3 99 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563949 82563968 GTCAAGATAAGGACACAGGC 58 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000079549 2 1 3 80 13 113837366 113837454 TATCTCCTCCTATAGCTTCATGTG 59 113836241 113836259 GCAACCCTTTCTGGAATCC 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000086447 3 1 2 80 3 1547479 1547506 AGAAAGATGGGATAGTGAGCAG 60 1547159 1547177 AGATGCTTTCGAGGACCAC 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 2 1 2 133 4 161728195 161728213 CAAGTCAGGTGGAACAGGT 60 161728499 161728767 GTCAATGCAGCACTTGAGG 60 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000002507 2 1 2 83 11 80800718 80802638 CCTGATGGAGATTGAAATCCC 59 80802683 80802701 TCCTGGGTCACTTTCTTCC 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758 1 1 3 80 13 52430666 52435263 CCCTTTCAGTACAGATTACAGAC 59 52430608 52430628 GCTGGTATATCCATCAAGGAC 58 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107 1 1 2 83 2 198997301 198997321 TGATTAAAGAGGACGACAGCT 59 198997366 198997755 CCTGCTGTACCTCCTTGAC 60 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138 2 1 2 87 10 13970698 13971981 TGGTCCGCAGAATACAGAC 60 13970629 13970647 TTCAGGTTGTCATCAGCCT 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000087673 1 1 3 80 18 62906604 62906622 AGAGATCCAACGAGTACCA 57 62906667 62930781 GAGAAGTAAGGTATACCGAGAG 57 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000067118 1 1 2 82 6 136411962 136411980 GTGGCCATGATGGATAAGC 59 136409123 136411916 CATTCACACGGTTCAGGTG 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452 1 1 2 80 8 117066577 117066598 AATCATACTTCCACAAGGATCG 58 117066713 117067565 GCAGAAGCAAGTGTAGGAG 58 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 2 3 3 172 20 34656731 34683162 GGCTCGGACTATTCATCAG 58 34647151 34656595 GAAGTTGAGTGGTCTTCCA 57 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000088821 1 1 2 93 11 84044109 84044669 ATCAAGAGTCAGCATCAGAC 57 84044035 84044053 GATACTTGATGCCTTCCCG 58 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000028814 1 1 2 80 2 198829820 198830314 ACTGAGAGTCAGCACTACAG 59 198830357 198830375 CCGGAATTGGAAGAAGTGG 59 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000031509 3 1 2 87 5 58309500 58309520 GCACTGATAATTTGGCAAGTC 58 58308992 58309453 TGATTCTTCGGAAACACTTGG 59 NA Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 2 1 2 103 20 3821844 3821862 GTTCTCTGCTCCAGATCCT 59 3821632 3821650 AGTATCGTGCGAATGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 2 2 2 80 11 87915049 87916302 ACAAACAGAACCCGAGAGG 60 87914987 87915005 CATGGACTTGAGGACCTCC 60 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000060264 3 1 2 119 5 59411356 59413635 ACAATTGCTAAGATTGAGGCC 59 59413716 59413734 CACCTGGGAGATGATGAGG 59 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000091448 2 1 2 80 X 10405857 10405876 TTGTTAGTAGCCACTCCAGG 59 10405381 10405816 CACCAGGTATTTGCAGAAGTC 59 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000077810 1 1 2 97 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858665 47861255 GCTTAACTGCTTCACGACG 60 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000044147 2 1 2 80 4 181384523 181384542 TACCTGGGAATGGAGATGTG 59 181384584 181387240 TACTCAGAAGCTCAACGAGG 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 3 2 3 81 2 123348670 123348689 CAAATGCAGGAGGAGAAGAC 59 123345081 123348629 CTGAGTGAAGAGGTTTAACCTG 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420 2 1 2 80 1 261173923 261173941 TGCCAAAGTACACATCCTG 58 261172518 261173879 CGAATATCTTCCTTGCGGA 57 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586 1 1 2 80 12 31233301 31235251 GACCGTAGATATCATGGAAGG 58 31233241 31233260 CCGTAGTAGAGAAACGTCAC 58 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 2 2 2 123 8 72743430 72743536 CTCTGGCTAGAGATCTATTACAC 58 72743619 72744251 ATCTTGTAGCAACCTGGAC 57 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000047854 3 1 2 80 5 173610904 173610922 GCAACATCTGCTTGATCCT 58 173610409 173610861 TTCCAGGTTTGTAGTTGCTG 59 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 3 1 1 62 1 229349181 229349199 CTTCATTCGATGCTCCTGG 58 229349872 229349890 AATCAGTCCATGTGTAGGC 57 NA DesignNoJunction Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 2 2 2 80 14 39748293 39748312 GCTCACAATATGACAATGCC 58 39748355 39749980 GACTGTAAGCCTCATGGTG 58 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 3 2 2 80 14 39755953 39786536 ACTGTGTTTGGAGTAACAACTG 59 39786577 39786595 ATAGGCCACTTTGGGAAGG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595 1 1 2 80 1 177169906 177169924 AGATGTTCCAGCAGAAAGC 58 177169968 177172449 GGAAGGCTGAAACGTACTG 59 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 1 1 1 70 1 81844062 81844080 TTCCCTTTCTTCTGGCTGG 60 81843926 81843944 ATAAGTACCAGGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000048980 3 1 2 108 X 10526439 10527726 ATCTCAATATCAGCAGCCCT 59 10526350 10526368 GGACACTTCTTCACTGCCT 60 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 3 2 2 87 8 49299517 49299535 GAGGAACTGGTACTGGTGG 59 49298212 49298960 TTTCGGATGGGCTCATAGTC 60 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 1 3 3 80 14 762048 763236 GTTTCCAATGAGACAGTACATATGG 60 761992 762010 GCAGTAGGTCTGCTCTGAG 60 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 2 1 1 60 7 114944354 114944372 ATGGATATGGTCAGCATGC 58 114944311 114944329 GTGCTGAGGATGTGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000056058 2 1 2 80 4 157153490 157153508 TTGCAGCGTATTACTCAGC 58 157150865 157151523 AAGGGACATTTATTCCCTGC 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 1 2 3 80 18 12028715 12028734 GACGCAAATTACAGAGTGGG 59 12028771 12029100 CATTACGTATCTAACATTGGTGGAG 60 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 2 2 2 81 11 82647450 82649236 GCAGTTTCACATCATAGTTCTC 58 82647390 82647410 CTCCATGATTCTGTTCTTCCA 58 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000009665 1 1 3 85 6 34042313 34053183 GGTACATGGTGGTCAACCT 59 34053232 34053250 CTGAATGTTGACAGCTGGC 60 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 2 2 2 80 4 86139251 86141460 GACTATATGAGATCTCTGCACC 58 86141499 86141519 GGAGGAATAGCAAGAGTTGAG 58 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000084986 3 1 3 131 13 52668003 52671464 AGGAGGAACAGGAAGAGGA 59 52673703 52673721 CTTCTGCCTTGTCCTCCTC 60 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695 3 1 3 162 15 109756326 109756344 GAGCAGATTGAAGATCGCA 58 109754808 109755688 CATTGTAACCTTGACAGATAGC 57 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 2 2 2 80 1 80345146 80345805 AAGAGAATTGAGGTGATGGTG 58 80345086 80345105 CTCGTTGTACTTCTGGTTGG 59 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242 3 1 2 83 12 31353795 31355918 AGACTCAGGGTGAAATGGTC 60 31355964 31355982 TAGTCTCTTCCTTGGCGTG 59 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 3 3 3 80 1 275853854 275853873 TTTACCAGGTTTGTCACGAG 58 275853244 275853811 CTTCCTGGTCATCTTGCTC 58 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487 1 1 2 80 1 123914240 123959929 CTATAACAGTGCTGATGAGCG 59 123914180 123914198 AGATACTGGCAATGCCCAG 60 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193 1 1 2 80 3 172722992 172723011 TGAGAGCAGTAGAGGAAGGA 59 172723053 172724755 ACTGTTGGATAGGGAAGCTC 59 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000088674 1 1 2 80 14 44684663 44684684 TCACTCAAGAACATATCGGAC 58 44684726 44684744 TCTTGTGCCAGTTTCTGAG 58 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907 2 1 2 80 14 44689032 44690080 GAGTTGAACAGATTAAGAGTGC 58 44690119 44690139 TTTCATTCATAGCTGGAGGTG 58 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 3 2 2 89 5 129163934 129163952 GGATCATGCAAACCAAAGC 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697 3 1 2 133 5 128865485 128881879 GAAGATGGCGATGGATGGA 60 128885040 128885058 GCATCTTCTGTGGTCTGGA 59 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 3 2 2 80 7 107593120 107595634 AGAGTGTATCATGGCTGGC 60 107593058 107593076 AATCTTTGTGTCTGGCAGC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000078885 2 3 4 83 8 117876425 117877822 GGTTAAAGAATATGCCATAGCG 58 117876363 117876382 ACGTTCTTATCACTGACTCC 57 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036168 1 1 8 80 1 226463306 226463325 ACAAGAACTCCTTGGAGACG 60 226463367 226471446 AGTCCTCGAAATTGATGGCT 60 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 2 2 2 92 3 118111421 118114764 CTGGATAACACTATTCATGGCC 59 118111350 118111369 TAGTGCAGTATATCGGGCAC 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382 3 1 2 82 4 24619255 24619273 TATACCCAGGCTCAGAGCA 60 24619319 24619708 GTCCCTTCTACAGTGGGAG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 3 5 5 80 13 55080386 55080404 ATGATCTGGGAGCAGAAGG 59 55079662 55080345 ATATTCTGCACACTTGTTCCTG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 2 2 3 82 5 167992675 167992693 TCACGAAGTAGGCTTTGGA 59 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 2 2 3 151 10 70566472 70566491 TAAATCTTGACCTGGGTCCC 59 70579746 70580554 GAAGGACTGTCCTACTGCC 60 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000055318 1 1 2 80 2 252808067 252808087 CTTCCTCCTACATGAGACACC 60 252808129 252809087 CGTTCCACTGGAAAGACAC 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 1 3 3 80 3 118152232 118175175 AGAGTGAACATAATAGGTGAGC 58 118175215 118175234 TATTAGCATGTCCTGCTCCA 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828 3 1 2 80 2 3788645 3809223 TCCAGTAAGTTTCAGACCCA 58 3809264 3809284 GATGCTGACTATTCCTCTCCA 59 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 2 1 2 80 9 15626015 15626035 CCTTCAAGATCTACGACAAGG 58 15624087 15625973 GCTTGTAGATTGCCTCCAC 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529 2 1 2 80 16 8760628 8766177 CTCTTTAAGTATCAGCAGACAGG 59 8766216 8766235 TTCGTCTCCCAGAATTCCTC 59 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 2 3 3 101 6 136151626 136151646 GTTCTGTGGTCTGTGAATCAG 59 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 2 1 1 60 1 16989123 16989143 CATTAGCCAGACTAACCAGAG 58 16987926 16987947 TACAGATCTTTCACTTGCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 2 2 3 80 17 9838225 9838351 AATTGTCTGTTATGACCTCACC 59 9838392 9838410 TCTTCTAAACTGCGGAGCT 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000083701 2 1 5 81 14 71572857 71576886 GTTGATACCAAGGAGCCAG 58 71579465 71579485 GGATGACGCAGATAAGAACTC 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000048752 1 1 2 102 18 27414125 27419086 AGAACAAGGGTATCAGTTAGCA 59 27413092 27413112 GCTCAGAATACTGAGAAGCAC 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511 2 1 2 85 7 126767982 126768003 TCATGTGCTTCAGAAGAAAGAG 59 126769142 126769234 GCTGCAAATACTGAAGAAGGA 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511 3 1 2 86 7 126767982 126768003 TCATGTGCTTCAGAAGAAAGAG 59 126769143 126769235 GGCTGCAAATACTGAAGAAGG 60 NA Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 1 2 2 83 1 47296042 47296063 GGAGTGAAATCAGGAACATCTC 59 47292112 47295998 AGAACACGAAGTCAGGAGC 60 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 3 2 2 82 5 146661938 146667894 AGTACCAAGCCTACGAACTC 59 146667939 146667957 AACATTATAGCCGGCTCCC 60 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000067420 1 1 2 81 8 53313879 53313897 GAGGAGAGTGGATGGTTGG 60 53313940 53319674 TTCAGGCAACTGAATAACAGC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304 3 2 3 80 1 198304446 198307529 GCCTCAAATCAAAGGAGCT 58 198304384 198304402 GAAGAGCCTTGTATTGCCG 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826 1 1 3 97 10 15457227 15457245 TATGGATGTCCGAGTTCCC 59 15454441 15457170 GCGTCATAGCATAGTTAATGAGG 60 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 2 2 3 102 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654707 120654726 TGAGGATGAGACATTGGCAG 60 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000080303 2 1 2 92 5 90971983 90975848 GTCAATTCAAACGTGAAGTCC 58 90975900 90975920 GCTGTAGTACCGAGTATTTCG 58 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000074951 3 1 3 97 4 61818982 61819000 GGTGAAGAAAGCCTTCCAG 59 61819058 61820246 CATTTCCAGACTGAAATCCCTG 59 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000090751 2 1 2 99 4 27244945 27246513 TGGAGCAGAATTTCTACAGGA 59 27244866 27244884 CACTTGCTTCTGTAGGTCG 58 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 3 2 2 80 16 48341958 48342374 CCAGTGGATTCAGGAACGA 59 48341896 48341916 CAGAAGATGTCAGTCATCCCA 60 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 1 2 2 80 2 1446265 1446781 AAACTTCAGTGGCTTCTAGAC 58 1446821 1446841 AATGAGCGTGAGAATATGTGG 59 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 2 2 2 80 2 1446266 1446781 AACTTCAGTGGCTTCTAGAC 57 1446822 1446842 CAATGAGCGTGAGAATATGTG 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584 3 3 5 81 10 56194525 56194543 TACCAAGGCAACTATGGCT 59 56194588 56195292 GGGAAATTGAGTACGTGCA 58 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 1 2 2 80 4 165626294 165626315 CAACGTCAGAAATGGATATGGA 59 165622656 165625295 TTCTTGATGGCAGTCTGGT 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971 2 1 2 80 9 15642980 15642998 CAGGATGAAGTGGGTACCA 59 15640630 15642939 TCAGAAGTGGTTATCGTAGGTC 59 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 2 2 2 80 5 134656580 134663843 CCACATTTCTGAACGTTGC 58 134663886 134663905 AGATCTCCTTCCGATCAGTG 59 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 2 2 2 80 16 6978753 6978774 AGAACAATTCCAAGTTGCTGAG 60 6979048 6979313 AAATGCCGTTGAACTGCTG 60 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 1 2 2 80 14 3251054 3251435 GATTCATCAGAGATCCCTGG 57 3250993 3251012 GTGCACATAAGATCAACAGC 58 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746 2 1 2 83 12 39371178 39371196 CTCAGTGTCCCATCTTCCG 60 39369504 39371131 TGATTCCTCCCTGAACTGC 59 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 1 2 2 80 8 82272012 82272936 CTACTAACAAGGAGCACGC 58 82272980 82272998 CAATGGCACATCCTGATGG 59 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501 1 1 2 60 7 130547800 130547818 CAACCGGTCATCTCTTTCC 58 130547843 130547862 AGACAGGTGTTGGAAGTACC 59 NA DesignNoJunction Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742 1 1 2 80 17 1723452 1723470 CAAGGAGACAGACTTCGGG 60 1705042 1723408 GTCAAAGCCATGCAGAGTG 60 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525,ENSRNOT00000066934 1 2 2 80 9 93183047 93183065 CTTCCCTTCTATGCCCTCC 59 93183107 93188810 AGTCCAAGAATCCTGGAAGAG 59 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 2 2 2 97 10 70328334 70332639 ATTTCAAGTGTCAGCAGACTG 59 70328257 70328280 GCTGGCTTATTAAGTTCTCTAGTC 59 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 2 2 2 80 13 67114733 67114752 GAAGGCGCTCTATGAATCAG 59 67107445 67114692 GTTGACATGTACCATGTGGAG 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000082985 1 1 3 107 6 51297217 51297708 GGACTACACTTATCTTATGTGCAG 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385 3 1 2 81 10 55533807 55535112 CACAAGAATCCAGAAGGTTGG 59 55533746 55533766 CATGTTCTCCTGTGACTTCAC 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 2 3 3 80 5 134206570 134206590 ACTATGTGAAGGTGGTTCTGG 60 134205114 134205582 GGAGCAAACCATAACCAATCC 60 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886 2 1 2 80 19 12514869 12514889 ACTACGAGTTCGAACCTTCTG 60 12504767 12514829 CCAACATCTGTAGTCTGTCCA 60 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311 3 1 2 88 17 15782621 15782642 CACATTCATCATAACAGGACGA 59 15784432 15792216 TGGACTCGATCTGAATCCA 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 2 1 18 60 1 43508749 43508767 TGGATCGAACTAACCACCA 58 43518486 43518506 CCCAGTTCTGTGTATATGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000084099 2 1 18 81 1 43475891 43508251 GTCATGTATGTGATTGTAAGGGTC 60 43508291 43508309 TTTGAGCAGGTTCTCCCAG 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000085873,ENSRNOT00000077168,ENSRNOT00000091832,ENSRNOT00000089428,ENSRNOT00000092034,ENSRNOT00000024682,ENSRNOT00000079628,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 15 18 60 1 43507443 43507462 TCTGCCTGTAATGTTCATGG 58 43508249 43508267 GAGGGTGCAATCTATGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463,ENSRNOT00000075728 3 2 3 87 2 235645096 235645114 AACCTGGAGAATCTGGTCG 59 235650125 235660902 CCTGGTTCTCCCTTTATCCC 60 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815 3 1 2 90 9 16754370 16754633 GAGAAACTGGATAAGGCCGT 60 16754686 16754704 TACTGAGAACCTGCAGCAC 60 NA Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 1 2 2 80 18 25649071 25650398 CACAATTTGCTGCTGAGGA 59 25650442 25650460 TTGAGCAAGACAGCTTACC 58 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167 2 1 2 80 5 165372408 165372428 AAGTGGAACTGCTTATCAAGC 59 165372469 165373127 GTTACCAGAAAGGACACCAG 58 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162 1 1 2 80 13 55539996 55540014 TCACAAGTTCCTCCCTCAG 59 55532972 55539955 AATCAAATATCCCTTGGCTTCC 59 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000025335 1 1 2 83 9 16953352 16953370 GACTGCAACACCATCTGTG 59 16952829 16953306 GTAGGGATCCAGTGTCTGTG 60 NA Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 3 2 2 80 10 15490657 15491083 AGGGCTAACAAGTCAGAGG 59 15491126 15491145 GTTGAAGCTGAGGAAAGGTG 59 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366 2 1 2 110 9 114994861 114994879 GTGTCTTCACCGTCATCCT 59 114990097 114994611 GTGGGTCTCATCTAAGATTGC 59 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 1 2 2 80 8 22944403 22944424 GACGAGATCTCAGAGAATCTCC 60 22944463 22944827 CATCTTGGTAAGAACCTTGCG 60 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 3 2 2 158 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664469 15664488 CAGGTTTCATGAACATGCCA 59 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 1 1 1 60 1 91072745 91072763 TACAGACTGACCATGACGC 60 91072308 91072327 AGCCCAAGCAGTATAAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000089140 1 1 2 80 17 16340531 16354216 ATCGGTCATTGGAGACGAG 59 16354259 16354278 CACTGTCATTCACCAACGTG 60 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 2 2 2 80 16 8215855 8215873 CTCCATCAGTGAAGAGCCT 59 8215916 8217076 TGAAGAAATCAACCCACTGG 58 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 3 2 2 87 8 85513344 85513365 AGACATACAGCTACTAGAAGCC 59 85513412 85514556 CTTAAATGCCTGCAGCAGAG 60 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852 1 1 2 80 5 150726752 150726770 GCAGTTCACATCTTCAGGC 59 150726812 150728272 TTGCTTCACATGCTCATTTCC 60 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852 2 1 2 80 5 150726811 150728270 TGGAAATGAGCATGTGAAGC 59 150728309 150728331 GGACGAGTCAATCTTTCAATCTG 60 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000084933 3 1 2 85 7 70335917 70335935 CACAGTTTATGTGGCCGAC 59 70335983 70336003 CAAGATGAGAACTACAGCGC 59 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 1 2 2 80 4 165427475 165427494 AACCTGTGGCTGTATATGTG 58 165427334 165427432 TCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 2 3 6 86 9 17351565 17351584 GACGTGTAAATGTTCCTGCA 59 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000081465 1 1 2 87 1 91904994 91905012 AAACAACGTCGTTGTCGTC 59 91905061 91906645 GTTGTACATTGTTGGGTTCCA 59 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002478 1 1 3 80 11 88875238 88875537 CTGATGGCAAGTTAATTCAGG 57 88877142 88877160 GACCACCATCTCCAATTCC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000046744 3 1 6 83 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132080069 132091519 GGGTTGATAATGCCCATGC 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 3 4 4 80 16 54373119 54373137 CAGAGTGTGAGAAGCTCCA 59 54373180 54374550 AGTTGTCAAACTGCTCTTGC 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 2 2 3 82 17 30621240 30621258 GGTAACGTCTGAAGATGGC 58 30621299 30623066 CCTTATACATCTGGAAGCTTATGG 59 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 3 2 2 61 7 60322055 60322073 GAGAGTTGTGAGGGATCCC 59 60322835 60322853 TTTGACAGTGTCTTTGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000076529 3 1 2 133 8 4441115 4441133 ACCGGCTCATCTTAGTCTC 59 4441229 4577159 GAGGTGATTGCTCTCATCTC 58 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 3 2 2 80 1 184392705 184398984 ATACTCGGGACCAGATTGTG 59 184399023 184399045 CATTCTCCTGAATGATGTCAGAG 59 NA Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 3 2 2 80 14 79865248 79865269 AATACTATGTCTCTTATCGCCG 58 79865310 79872063 TGATCTGTAGGTCCTTGGG 58 NA Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 1 2 2 80 6 145783930 145783951 CACTGGGATTCTCATTCATCTG 59 145783991 145784399 AGCTGCTTCTGTAAGCTCTC 60 NA Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 2 2 2 80 6 145776361 145778971 GTAACCCAGAGCTCATAGAGTC 60 145779012 145779030 CATCATCGTCCTCCTCGTC 60 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923 2 1 2 124 3 122701436 122701454 GACTACAGGATGAGGTGCA 59 122701041 122701349 CCCTCACACTTGATCTTCCT 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 2 2 3 80 17 21639929 21704867 AATAGGATTCCAGGAGTCCC 58 21639868 21639888 CATATCCTTCCACTTCACAGC 59 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 2 2 2 143 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309114 42309132 AGAAGTCCATGTGGCTGAG 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105 1 1 2 80 5 153685037 153685056 ACATTCTCCTTCTCGGAGTG 59 153682977 153684997 CTTCTCCTCCTTCTACTACGAG 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105 3 1 2 80 5 153685040 153685058 AGACATTCTCCTTCTCGGA 57 153682979 153684997 TCTCCTCCTTCTACTACGAG 57 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 2 2 2 80 10 58368979 58370206 GAAGAGCAAAGAATGGCCG 60 58370248 58370268 CCATACTTGAGCCAGTCTAGG 60 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702 3 1 2 86 17 9326820 9326840 GTAATTTAGCCGGCTTTGAGG 60 9326888 9332795 CCAGTGTGCTTCCTAGGTC 60 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775 3 1 2 80 3 149354337 149354505 GCAAACATGAATGACCCTCTC 60 149354277 149354297 ATATCCCAGTATGAACTGGGC 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449 1 1 2 100 8 87205384 87211884 CTCAGTCACCAGGGATCTC 59 87211944 87211966 GGTTATGTCTCTGGTATTCAGAG 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 1 2 5 80 2 258868226 258932037 AATACCGAAGGTTTCAGCAG 58 258868165 258868189 GTCTATAGAATAACCTTCACAGGAC 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045905,ENSRNOT00000081945 2 2 5 83 2 258805540 258805558 CCAGATTCTAGCAGGTTGG 58 258804342 258804669 ATCTTCATAGCCAGGTAAGTC 57 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000086460 1 1 2 80 13 68771822 68771940 GGATTCCAAGTCTACACATAAGC 59 68771764 68771784 GAACCATTTGTTTCTTGGTGC 59 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942 3 1 2 86 17 12641588 12641607 TTAAGAGTCCTCACGGTACC 59 12639594 12641076 TGACCAAGTCACAGGATGG 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776 3 1 2 94 7 130326792 130331207 GAGTATCTGGAGGAGCTGG 59 130331265 130331283 GAACCCTGGATCAACAGTG 58 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000088313,ENSRNOT00000045532 1 2 4 80 2 18522665 18525804 TATCTACCAGGACCTGATCTC 58 18522605 18522625 CACATAGGAAGTCTCAGTAGG 57 NA Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000012880 2 1 2 93 X 15616120 15616623 TCTGGCAGATACTACACGG 59 15616680 15616698 CAGAACTGGAAGACTGCTC 58 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 2 1 1 70 5 38922755 38922773 GGTCTGTGGTTGAAATCCA 58 38922680 38922698 ATCCTTCTGGGCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635 2 1 2 80 2 140322631 140324476 AAGAAGTCCCGTGGAAGTG 60 140322569 140322587 ATGACATCTGGCCTCATCG 60 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 1 2 2 90 16 81204890 81205783 CAAGGACATGGTCCCTCTG 60 81205836 81205855 GTAGGCTAGGATCTGCTGTG 60 NA InUTR Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000081066 2 1 5 102 11 27831408 27831426 CTTCATTGTTCTGGCTGCA 59 27812814 27831342 TCAGTAATGCTGCTCAACG 58 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000079769 2 1 4 82 14 80091419 80091438 CGACATGATCTCCTATTCGC 58 80088732 80091374 AGAGCAACTGAGGTGACTC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000079769 3 1 4 86 14 80095238 80096467 GCCTTACAGGAAACCAGGA 59 80095170 80095188 ATAGATCACACGGCTTGGG 60 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000074793 2 1 3 83 7 135550886 135550904 GTGTACGATGGGAACAAGC 59 135550820 135550839 GGGTAGAGCTTCTCCTACC 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000027271 2 1 2 81 5 137084513 137084533 GGTTCAAAGACTTCCTTCCTG 59 137076246 137084470 TCAATCTGCAATGCACCTG 59 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 2 2 2 80 1 166433673 166453786 CAAGATCAAGTGCAGGATGG 59 166453827 166453847 TTTCGGTATTCTATGTCGTGC 59 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 2 1 3 71 1 82832283 82832302 TAACAATGCTGAGAGCACCA 60 82832142 82832160 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 1 2 3 91 7 14541375 14550369 AGATTGAATGGGACGACCTG 60 14550423 14550441 GGAGATGACTGTGACTGGG 60 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240 3 1 2 152 12 38520430 38524589 GTCGGAAGCTGGAATAAATCAC 60 38520299 38520317 CATAGCCCATGGAGAGTGG 60 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 2 3 3 123 5 2051972 2054772 ACACAATGGATGGAGAGGA 58 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 1 2 2 80 8 58089853 58089872 TCCAGAGTTGGTTCACTGAG 59 58088771 58089812 CTTGTTTAGAGTGTGCTTGGT 59 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 1 2 2 80 9 76766280 76767138 TACATAACGTGTGACAATGAGC 59 76766221 76766239 ATTGGGTGTGCTTGAAGTG 59 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481 3 1 2 81 5 5215402 5215420 ATTCGTGCTGCAGAATCAC 59 5215462 5280741 TGCTGTTATCTCGAACATAAGC 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095 3 1 2 84 6 6908744 6915242 CTCAACAAGACTGCAAGCG 60 6915289 6915308 GCATTATCAGCGTGTTGGAG 60 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126 3 1 2 80 1 174950528 174950546 GTAGAAATGGTCGTCCCTG 58 174949817 174950486 GGTCTTGAGATCAAAGAAAGC 57 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 3 2 3 89 1 66237070 66237089 TAAGCCTGAAGTCATCTCCC 59 66233735 66237018 CTCATCCACTCTGGACAGC 60 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000067931 3 1 2 86 4 145707964 145715507 CGGATCCAGACACAGATCC 60 145707896 145707914 GATGGAGGTTCGAGACTCG 60 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 1 2 2 80 7 18416360 18416379 ACGTAGTATACAAGCGTTCC 58 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 1 2 2 80 5 8989498 8990457 GATTGGTCAGATGGATTGCAG 60 8989438 8989458 GAAGACTCCTTGCAGTTAACC 59 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682 3 1 2 192 3 46809634 46812794 CCTGTATCTGCCTACCAGG 59 46806050 46807144 TTGCAGGCATGTATGTTCC 59 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000081925 3 1 2 80 5 136704358 136704378 CAGAAGAAGGCAATGGAACAG 60 136704221 136704316 CAAAGACTTCTGCCTGTGC 60 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000065535 1 2 3 90 11 31116613 31117710 GAATTTGGAGGTGTCGGAG 58 31115541 31115559 TATCTTTCCGTGCTGTTCC 58 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 3 2 3 80 1 86999205 86999877 TATGGTGGAGTTTGATTCTGTG 59 86999915 86999936 CAACAGCCAGAATAGATGTCAG 59 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 1 3 3 80 7 117362795 117362813 TACCTTACTCCCACCATCC 58 117362652 117362754 GAGAACTTGCACATTCTTTAGC 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 3 3 3 80 7 117360889 117360908 CAACTGGACCAGAGACTGAG 60 117360639 117360847 GATCTGAGACCTAGGGAAGC 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 1 2 3 124 2 208131872 208131890 ATGAAGCTCTGGAGCTGAC 60 208132308 208134869 AATAAACTCGTGGTTAGTGGTC 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 2 2 3 125 2 208131870 208131888 CAATGAAGCTCTGGAGCTG 59 208132308 208134868 ATAAACTCGTGGTTAGTGGTC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000080581 1 1 3 80 3 129767303 129767324 ATCAGGACTTTGGTTATGTTGG 59 129771147 129773597 GTCTCCTGATACCTGGCTC 59 NA Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 1 2 2 80 12 45100398 45103039 GGACTCCTTACTGGATGGC 60 45100336 45100356 GTGACCAGATGTCAACTTTCC 59 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482 2 1 2 83 9 94897832 94898064 CACTAATATCTTTGGTCTGTCCG 59 94898730 94898748 ATGGAAGAGACAGAGCGTC 59 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799 3 1 2 90 14 81667700 81667718 TGAAATCGTGGACCTCACC 60 81661785 81667648 TTTCTCACCAATGCTTACCAC 59 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533 1 1 2 97 3 117379919 117381431 AATCAAGGGTAAGTGGCGT 59 117379840 117379860 CAGAGGTCTTCCACTAAGGTC 60 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533 2 1 2 97 3 117379919 117381431 AATCAAGGGTAAGTGGCGT 59 117379840 117379859 CAGAGGTCTTCCACTAAGGT 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493 3 1 6 80 5 150163353 150165462 CTGAAGCTTCAATTATGACCTGG 60 150162874 150162893 CTTCCTTCGTTTCCGAATCC 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000013761 2 1 6 137 5 150125521 150125539 TGAAGGTTGAAGAGAAGCG 58 150121894 150122078 TTTCTGCAAGCTTCTGAGC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 2 2 3 81 14 72335550 72335568 TTCTCAGCCTTTGGATCCC 59 72333612 72335507 GATCATAGCAAGTTCCACAGC 60 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 3 2 2 80 8 85459736 85459755 AGCAATTCAGCTCCTGAGAG 60 85459797 85461298 TAAGGGTATCGAAGTGCCTG 59 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 3 3 3 80 12 39866828 39867598 CTGTCATGGAGGTTTATCACC 59 39866768 39866788 TGATCTGGTACATCAGTTGGT 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856 1 1 2 80 1 216812909 216812927 CTTCATTCGCTACTCCCGT 60 216810364 216812280 AGCATAGTGGAGGTTGAGAC 59 NA Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 3 2 2 80 2 257660771 257660789 TGGATGAAGATGATGAGCG 57 257660831 257664999 GAATGCTTTCTTCATCTGAGG 57 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673 3 1 2 80 9 42880253 42881109 CATCCAGCTTGAGGACTCC 60 42881151 42881171 ATGAACTTGTAGAGGCTGACC 60 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 1 2 2 80 9 93105018 93105039 CATTGCGTTAGTGATGTATGGG 60 93105078 93106346 AGAATTGGGTCCTTATCACGA 59 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000039999 3 1 3 86 11 35696795 35697065 AGATTAAAGAGGCCTTGTCAG 58 35696729 35696747 TTTCTGTCTTAGCCAGGTG 57 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681 1 1 2 96 9 113303109 113311771 GATAAGCTGAACGACATGGA 58 113303032 113303053 CATTGAGTGAAACACTATGTGG 58 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000070821 2 1 2 82 2 87010945 87010963 TTTCCAGACATTCCTGCCT 59 87011012 87011032 ACAAAGGTTTACCACACTCC 58 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000036646 2 1 2 80 14 64773788 64773807 TTATACCACCGCCATCACTC 60 64773848 64774975 ATTCGAATCAAACTGTGGTGG 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343 2 1 3 140 12 47228685 47228703 GACCAACAAGAACAGGGTG 59 47228804 47243804 ATAAATAATAAGCGGCAGAGGC 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 1 2 2 80 13 85852693 85854905 CAGATCCTCAGGAAAGCAC 58 85854947 85854967 AGGTCTTTCCTTATGGTTCTC 57 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544 1 1 2 80 1 89346004 89346954 AGTATGAGAGTGAGAAGCGC 60 89345943 89345961 AACTGAGGTCCAGTTCTGG 59 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837 2 1 2 81 2 104919821 104919840 TCACCACCAATGTCTTACCC 60 104917504 104919783 GTGACATGTTCCATCATTAGATAGG 60 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 2 2 3 83 11 36749240 36749258 TGTGGCAGAGATGAAGGAC 59 36749305 36756784 CCAATACTGTCCGGTGGAG 60 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545 2 1 2 85 1 67845677 67845696 TGCTTATAGGGCTGAATTGG 58 67832563 67845631 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 3 1 1 60 1 64128449 64128468 GAGGAAGAGAAACGACAGGA 59 64129159 64129180 AGTATGTCAGAATACCTAGTGC 57 NA DesignNoJunction Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419 3 1 3 81 3 43255660 43271604 AGGAAGCAAGTAAGCCTGG 60 43271649 43271667 CTTCTCTGGAAGGAGGCTC 59 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000023286 1 1 2 82 2 29659809 29661687 TATGCACTTCTCGGGAAGG 59 29661732 29661751 TAGCCTGGTGTCCAAATCAG 60 NA Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 1 1 1 84 1 65566940 65566959 GCACATGTTCATCCACTCTG 59 65567651 65567669 TTTGAGCAGATAGTCGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 3 1 1 85 1 65566940 65566959 GCACATGTTCATCCACTCTG 59 65567652 65567670 GTTTGAGCAGATAGTCGCG 59 NA DesignNoJunction Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000090143 3 1 4 152 1 201256995 201281636 TGAGTTCCGACTCTGAGGA 60 201281752 201293325 GCTCAGAAATGCATCCTGG 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295 3 1 2 80 8 116758082 116758439 CTACCAACAGTGCTTGAGG 58 116758482 116758501 GTTGGGATCAAATTGCAAGG 58 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 3 2 2 80 1 100835151 100835262 AGCATACACTCCTGGAATACC 59 100835304 100835322 TGGACATCACATCTCCCAG 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 1 2 5 111 1 215671962 215673426 AGGAGGAAGAGGAAGTCCA 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339 1 2 5 80 1 215671968 215673197 AAGAAGTCCAGGAGGAAGC 59 215676245 215678558 TCTTAGGAGCAGTAAGTTTGGG 60 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742 1 1 2 80 7 137142259 137142278 GCAGATGATGACTAGGAACG 58 137142320 137185971 GGAACATCACCAATGTCTCC 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476 3 3 4 87 3 152602479 152602497 CCAAGAGGATGAATCTGGG 57 152602547 152604206 TTTCACAGACTCAAACTGGG 58 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216 2 1 2 80 16 9640701 9640720 TTACTACAGAGCACCAGAGG 59 9639993 9640345 CCCATTGAACATTGGGCAG 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 3 2 5 82 7 80745184 80745202 AGTGGTCAAGAAGATGGCA 59 80745248 80777746 GTGTGGTGATCTCCCACTC 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000000821 2 1 4 146 12 48164877 48164897 GTCAGCCATTGACATGTGG 59 48162032 48164214 TCACATAAACCTCCAGGGAC 59 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 2 2 2 80 2 149006667 149010014 TTTACAGCGTTTCCAAGGAG 59 149006606 149006626 CTCTCAAATGTTCTGGAGAGG 58 NA Rattus norvegicus 81 Fgd1 ENSRNOG00000038970 ENSRNOT00000003443 2 1 1 80 X 20140450 20140469 CCCTGGAGACTTTCAAACTG 59 20140511 20140868 CAAGATCCACGTTTGGAGAG 59 NA Rattus norvegicus 81 AABR07052831.1 ENSRNOG00000046674 ENSRNOT00000071319 2 1 1 80 3 77799792 77799812 CAGAAGTGATTGTCCTGTCAG 59 77791811 77799755 GGATGGAAGAATAGTAGTGAAGTG 59 NA Rattus norvegicus 81 AC135400.1 ENSRNOG00000037087 ENSRNOT00000055893 1 1 1 60 7 127081602 127081622 GAGTTGACCGCTATGAATTCC 59 127081562 127081580 CAAACTAAGGCCGACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlr ENSRNOG00000009946 ENSRNOT00000013496 1 1 1 80 8 22767022 22767380 GCATCACACTAGATCTTCCCA 60 22767421 22767440 CATTGACATCGATGCTGGAG 59 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000089827 2 1 2 87 13 84617803 84618275 AAATCCAGAAATGGAGTCCC 58 84617735 84617754 CAATTCCTGGATCTCAACCT 57 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813 2 1 3 80 14 83345999 83346525 CTTTGACCAAGACCTGCAC 59 83346567 83346587 TTGGCATGTGTTACAAAGCTC 60 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000074532 1 1 2 83 20 47225861 47253677 GGGTCAAGACCAATCTTCCT 60 47253724 47253742 GTTCACTTCGAAGCCACTC 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 2 2 2 81 3 43113699 43114556 GGACTATTCCAGGTTCCAGG 60 43113637 43113656 GAGATCGTAGAACTGCTGGA 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 2 1 2 80 13 36119523 36119543 GTGTTATCAGCTTGAGGTACG 59 36117289 36119483 CCTGGAATGTAGAAGCTTGTG 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000057673,ENSRNOT00000050005 1 2 3 60 14 83602671 83602690 GGGAGTTACTTGTCTGTCCC 60 83591908 83602648 ACTCGGAACACCTAAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 3 2 3 81 14 83587895 83589636 CAAGTGAAAGAGGTCAACCG 59 83587833 83587851 TGATCTCCAAGATGCGGTC 60 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445 3 1 3 81 12 43501140 43503325 CACTGTGGATTTCAAGGTGC 60 43501078 43501096 TCATCCTTGTCATAGGGCC 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000079993 3 1 2 128 2 210444067 210444087 TACCTTTGTCCTTTCCATCAC 58 210441380 210443468 CTGGCAACATACTCATCCA 57 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 2 2 2 80 16 61768248 61768267 CCATATTCCTCACCACAGGT 59 61768309 61769349 CCCATTCAATCAGATGTGCC 59 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 2 2 2 80 2 116364365 116369572 AAGTGAAGCAGTTACCACC 58 116364303 116364323 AGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000084198 1 1 2 88 2 178184174 178197720 AACCCTTGTGAGATGGAGC 60 178197772 178197790 TCTGAGTCGATCTTCCTGC 59 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 3 2 2 82 3 147109080 147109100 AGCAGAAGGAGGTTTGTATCC 60 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 1 2 2 80 8 128661864 128662075 AAATGCCAGATGGATCACAC 59 128661803 128661821 GAATTCCACTCGACCATGG 58 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 1 2 2 81 1 70260222 70264200 CCTCTGCAGGGAAGAAGAC 60 70264243 70264263 TCCTGTGACACGTTCTTAGAG 60 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668 1 1 2 80 1 70253694 70254518 TAATGAAGCCTTACCTTCACC 58 70254559 70254578 GATGTGGTTGGAATTCTTCG 57 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944 3 2 5 105 10 89174752 89174993 CCCTTCTTTACGTTACAGCC 59 89175061 89175079 TCATGCTGGACTGTTTGTG 58 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754 1 1 5 80 10 89177702 89177721 AGGAGTGGCCAGAATAACTC 59 89177764 89179530 CCCATGGAACTCTTCCTCC 60 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000088331 1 1 2 181 10 89166948 89167809 CTCGCTGTCTCAACCTCTC 60 89168386 89168540 CTGTAATACCTGCTAATCAAAGTCC 60 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 2 2 2 80 1 71687039 71687058 GGACAAAGGGATCTCCTCAC 60 71680853 71686997 GAACAGTTGGCTAACACCAG 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524,ENSRNOT00000089624 2 5 5 80 8 99640721 99640740 GAAGTCATGACTCTGGAGAG 57 99640782 99717133 AGCCTGGATTTCTATCTCCT 58 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 1 2 2 80 3 157009812 157013429 GAAGTTAAGCCTGTGGAACG 59 157009751 157009773 CCGGTTACTGTTCTTATACTCAC 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 2 2 3 199 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798793 147798811 TGTTTCGGATGGTACCCTG 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 1 2 3 92 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390866 154391144 GATGCCATCATACTTCTGCTG 59 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 3 2 2 80 9 35289615 35291110 AGAACATCTCAGAGGTGGT 58 35291154 35291172 GACTATCTCTGCAACCGTC 58 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000060503 2 1 2 98 9 35294120 35294138 CCATAAAGCCATTGACCCA 58 35294200 35294986 GTTCTCCTGTGCTTGACTG 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 1 1 1 60 3 168129972 168129991 ATCACAGAGCTAAAGGAGGA 58 168130888 168130909 CATCCTCTAAATTCTGGAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 3 2 2 80 10 89237656 89237675 CACTCAGACATGAATCTCCC 58 89237718 89239684 CTTGTAAGTGGGACCATCC 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000013991 3 1 7 82 16 64053063 64053081 GATAACAGCTTCCTCAGGC 58 64053124 64055290 GCTATAAGGTTATGTCTTTCGC 57 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 3 2 7 80 16 64036977 64043375 AGCTTCTACAAGCATCTTGG 58 64048170 64048189 GATGCCAGTAATTGTCAGCA 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 1 3 3 80 X 23101844 23104188 AATGAGATTGATGCGGGTG 58 23101782 23101801 CCGTAGTGCAAATTCCTCAG 59 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 3 3 3 80 8 26434150 26447688 GGTAGTAGGTGAATCTGGACTG 60 26447723 26447747 GGATACTCTGGAGAATACAAATCTG 59 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 2 2 2 81 14 84650310 84650331 ACCTCTATCTCGTGTATAACGT 58 84647898 84650270 AACTGAGGTCATCCAAATAGC 58 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 3 2 2 82 14 84650310 84650331 ACCTCTATCTCGTGTATAACGT 58 84647897 84650270 AAACTGAGGTCATCCAAATAGC 59 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 1 1 1 86 14 3064746 3064767 GAAGTCAGACATGAAGAAACAC 58 3067151 3067169 CTCTGACTGAAGGCTTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 2 2 2 80 X 25486933 25486952 ATGAGTTCAGTGTGGTCTCC 60 25477392 25486893 CCGAGTTACAAAGACTAACGAC 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000080174 2 1 5 91 20 4806712 4806731 TATGACATGCCAGAGGACTC 59 4806536 4806555 TGACACAAATGTGAGGCCA 60 NA Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 3 2 2 80 5 57001657 57001676 TAGAAGCTGTTGTGATTGGT 57 56999847 57001616 CTTTCAACTGTACTTGCTGTC 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 2 3 3 92 8 120444316 120444335 AGAAAGTCTGGATGAGGAGG 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144 3 1 2 80 14 82277225 82278999 CGTCACTGTACTCAAGACTG 58 82277164 82277182 TCAAAGGTGACATTGTGCA 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000080695 1 1 2 106 14 82278064 82278991 TACTCAAGTCCTGGATCAGTG 59 82277978 82277996 GAAATTGGTGGCTCGACAG 59 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 3 2 2 81 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641410 52641428 CATAGCACAAGTTCTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 2 2 2 80 9 53704930 53706123 CTGATGAGGAAGAAGATAAGACGA 60 53706161 53706180 GGTCGATAGTTGCTATGGGA 59 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 2 2 2 85 1 127715292 127725403 CCGTCACATAATGAAGTTTACG 58 127725448 127725467 TTCTGGCGAATTCTAAACCA 58 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 3 2 2 80 12 52112092 52112111 AATGGTACCTGGAGAACGTG 60 52109595 52112051 CTTTGCTGTTTCTCACCTCTC 59 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 2 1 2 71 10 62053945 62053963 GCATTTCTGGAGGACACAG 59 62106144 62106162 ACTCAGAGGTAGCTCTCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000051701 1 1 2 81 2 211466235 211466253 ACCCTGACTTGTCAGATGC 60 211466296 211467933 TCACAATCATCAACCTTGTGC 60 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000050275 3 1 2 89 9 52698705 52698724 AAGTTCACATGTGTAGCCTG 58 52698775 52705927 CTGTTATCTTGACCAGAGGC 58 NA Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000030891 2 1 2 117 12 48284179 48286155 CGGCTGTCAGATACAAAGTC 59 48284081 48284100 TTTCTCCGCTTCTTCCTCTC 60 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 3 1 1 80 2 35484888 35484909 AGGGTTGATTTCTGCAAATCTG 60 35482771 35482792 ATTAGAGCATGAGAGCTTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000016273 1 1 2 90 1 6853891 6961861 CAGATCTGATGAACACAACGA 59 6842115 6842133 ATTGATGGGTGGTTTCCCA 59 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 3 2 2 80 8 61768825 61769542 ATCTCAGAGCATTGATACTCCAG 60 61769582 61769600 AAGCCCATGATCAGGTCAG 60 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086 2 1 4 80 8 39200845 39209294 GGATATACAAGTTGCTGTGCT 59 39200785 39200803 CCTTCTCCCAAAGTTTGCA 58 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 2 2 2 80 9 61248321 61249834 CATAGAGGGATCATGACAGG 57 61248260 61248279 GGAGTCTTTACAGAGGATGG 57 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000092026 3 1 6 81 5 158109540 158109559 TCAACGACAAGTCTACTGGA 58 158109603 158111037 CCTGGAACTCTCCACTCAC 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108 2 1 6 81 5 158120014 158120032 CTCTTTACCCTCCATGCCA 59 158120076 158121274 CCATCACTACCTCATTGCAC 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 1 1 1 115 2 42727742 42727760 TATGCTGAGACTGTGGCTC 59 42727867 42727887 CCTATGATAGTGATGCAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900 3 1 2 80 1 72881419 72881437 AAAGGTTGACCAGACTCCG 60 72881481 72881751 GGGCTCATCGCTTCTAGAG 60 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595 1 1 2 80 2 49158334 49158358 AGAATAGTACAGTGGAAGAAGACTC 60 49155702 49158297 CGTCATAGTTCACCTGTCCT 59 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838 2 1 2 82 8 118174107 118182324 CAACATGGCAGCTTCTAGG 59 118174043 118174062 CAAGAGCTCTTCCAATCACG 59 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 1 2 2 80 8 22800761 22800780 CCTCATATCAGCATGCTTGG 59 22799854 22800719 TAAGCCACTTTCAGTTCTCG 58 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 3 2 2 80 5 70338047 70338066 TTCCGAGTACACTCTGACTG 59 70338107 70345599 AAGAATGGAATAGGTGCACTG 58 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000065222 1 1 2 106 2 227580630 227582427 AGTTTGGGAGCTGAGAGTG 59 227579771 227580561 GTATCATAGGAAGCCCTGCA 59 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 3 2 2 80 16 72018787 72019645 CATACTTACTGGCATTTGTGGAG 60 72019684 72019703 CACCATAGATCGGTTTGCAC 59 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 1 2 2 80 2 52397471 52397491 TCTGGAAAGAGTGAATTCGTG 58 52397530 52402884 CGTTTAACATGAAGGATGACAG 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 3 2 2 80 2 52397468 52397489 ACTTCTGGAAAGAGTGAATTCG 59 52397527 52402881 TTAACATGAAGGATGACAGCAG 59 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 3 2 2 80 5 159521403 159521422 TATGCTGTCTGCATCTTCCT 59 159521464 159521568 CAGAGTCATGCTTTGCTTCC 60 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000081558 2 1 4 83 2 53159929 53159948 AAAGTACAGCGAGTTCAGTG 58 53159568 53159883 AACTTGGGTCCTTCTTCAC 57 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 3 2 2 80 3 132958332 133012107 GTGAGTACCTCAGGATGTGG 60 132958271 132958290 GTCTTCAGCTTGTAAAGCGT 59 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 2 2 2 80 5 154931752 154932854 AGAAGCACCTTATAACAGTGAC 58 154931693 154931712 CCGAAGTTGATAAGACCGTG 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488 3 1 2 83 8 132515165 132518478 ACTCATAGTCCTTTCAGCTCG 60 132518522 132518541 CATGACAGCATGCTCTTTCC 60 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 3 2 2 83 3 71863419 71864032 AGGATCCAGTGAATGAGGT 58 71863354 71863374 CCACGTTATTTACAGTAGTGC 57 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462 3 1 2 113 5 128648123 128650885 TGAGAAACAGCAATCGCAG 59 128650962 128650980 TTTCTTGTCTCGACCAGCA 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 3 3 4 85 3 56886774 56886879 CTCAGAACACAGTCACTATTCC 59 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 3 1 1 69 16 75428801 75428819 TCTGTCTCCTTTGAAGGCC 59 75429434 75429452 ACTGCTTTAATGGCCATCC 58 NA DesignNoJunction Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 2 2 2 62 5 78262703 78262721 AGCTCGATGACATTGAGGA 59 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000088523 1 1 4 146 5 160361412 160361430 CTCCAGGGAAGATCGAGAG 59 160363067 160372964 CTGTCTGCATGGGAAAGTG 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516 3 1 2 82 3 153582302 153582322 ATGACTATGAGTCACGGACAG 59 153582364 153582594 CACCTTCCTCGTGTTATTGAC 59 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000057310 3 1 2 180 16 90341672 90341690 TGTGTTCACCTTCCCACTC 60 90345834 90345856 TGGTTGAAACTTGTTTGTCTCC 60 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 3 2 2 80 3 176768435 176768454 CAGAGCTAACCTCATCTGGA 59 176762326 176768396 CTGATCACATGTTCATCGTACTG 60 NA Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163 2 1 2 99 16 81999323 81999342 ATATTGCTTGTCACAGTCGG 58 81994150 81999262 GCTGTACAGTCTGAGTTCTC 58 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 1 2 2 80 3 65864531 65869283 ATTTAAGCCACCAAAGGTTACC 59 65869323 65869342 ATATCCAGGCAGATGACTCC 59 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 3 2 2 80 3 65864532 65869283 TTTAAGCCACCAAAGGTTACC 59 65869323 65869343 AATATCCAGGCAGATGACTCC 60 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000079096 2 1 4 122 16 81843116 81843134 AAACATCCCACTCACTGGA 59 81841616 81843030 TACCTGAAAGCAGCTTCCT 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000018697 1 1 2 93 3 176810855 176816044 CCGTATCTGCCTACAAGGA 59 176810780 176810798 TAGATGGTGTTCGGGTGAG 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000063906 3 1 2 166 3 159333761 159335181 GTTAGCCTCTTCCAGGACG 60 159335310 159335657 TCCTCCTTGTAACCTTTGGG 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677 1 1 2 81 3 159344516 159347505 CTCTTCAAAGAGGAGATGATTGAC 59 159347542 159347563 GCTTGACACTCATGATCTTCAC 60 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360 1 1 2 80 3 79980389 79980409 TGATCAAGACTCTGTCATCGG 60 79980053 79980352 GAACTGTTACTCACTTCAGAATCC 60 NA Rattus norvegicus 81 AY172581.15 ENSRNOG00000032274 ENSRNOT00000042644 2 1 1 60 MT 3842 3862 TCAGCTAACTAAGCTATCGGG 59 3883 3902 AGTACGGGAAGGGTTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051663 ENSRNOT00000077470 1 1 1 60 5 67311870 67311891 AAGTTGAAGAAGATGACCATCC 59 67311906 67311930 TACTCATATACCCTTGACTGAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051663 ENSRNOT00000077470 2 1 1 60 5 67311872 67311892 GTTGAAGAAGATGACCATCCA 58 67311911 67311932 GCTACTCATATACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008152.1 ENSRNOG00000058109 ENSRNOT00000087161 1 1 1 80 2 46042110 46042423 AAAGGAGACTTTAGAGCAGG 57 46042049 46042070 TCTGACAGGATAAGATCAAACC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000059306 ENSRNOT00000082701 2 1 1 68 2 177560815 177560833 TCCTTTACTGCTCCACAGG 59 177560865 177560883 TTCTGGAGAGGGTTGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059306 ENSRNOT00000082701 3 1 1 69 2 177560814 177560832 CTCCTTTACTGCTCCACAG 58 177560865 177560883 TTCTGGAGAGGGTTGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052662 ENSRNOT00000080827 1 1 1 60 2 252246383 252246406 CATAGAGAAGATTAGTATGGTCCC 58 252246346 252246366 TGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059502 ENSRNOT00000082265 2 1 1 60 5 113926563 113926582 CCTCCTTGGTAGTGTATGCA 59 113926522 113926540 GTTTCCAAGGTCCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107597.1 ENSRNOG00000054617 ENSRNOT00000088311 1 1 1 60 8 70269976 70269995 ACGACTTATGGTATTGCGAG 58 70269935 70269958 CTCATAAAGAGTAACAGAACGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058732 ENSRNOT00000089158 1 1 1 60 16 26782527 26782549 CGATACAGAGAAGATTAGCATGG 59 26782489 26782508 AACCGCTTCACAAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055491 ENSRNOT00000088826 3 1 1 61 11 49053542 49053561 TAGATGGCAGAAAGGCTACG 60 49053500 49053524 CTAATAATTCAGATGTTCCCAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052872 ENSRNOT00000091971 1 1 1 60 11 5021871 5021890 ACATGTAGTTGCCATGTCAC 59 5021830 5021848 ACATAGCTGCTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051532 ENSRNOT00000085683 3 1 1 77 16 20294815 20294834 GTTTAAACAGTGGTGCACAC 58 20294874 20294892 TCCTGATTCACTCTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059879 ENSRNOT00000079994 2 1 1 93 16 72133127 72133146 TAGAGGCATTGCAATTGTGC 60 72133053 72133071 TTCATAGGCTACACTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000052441 ENSRNOT00000080180 3 1 1 61 8 72701228 72701247 CAGCAGTTCTTTCCTGTTGG 60 72701186 72701210 GATGCCAGATAGTGAATTTCTATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055457 ENSRNOT00000086619 2 1 1 66 8 20768871 20768889 ATGCTCACTTTGGAAGCAC 59 20768823 20768846 CACAGAGGCAATTCTAATCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056506 ENSRNOT00000090136 2 1 1 83 8 55410605 55410623 TCCAAGGCACGATTATTGC 59 55410540 55410563 CAGCTCTGAAGTGTACATATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054127 ENSRNOT00000086819 3 1 1 66 8 38137486 38137504 TTTCTTTCCTCAGCAGCAC 58 38137438 38137456 GTCATCCTTGTGGAGAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.2 ENSRNOG00000056737 ENSRNOT00000080388 2 1 1 61 8 116880149 116880168 AAATCTCTGGAGTCAGAGGC 59 116880107 116880126 CTGACACTCACCGTTATACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041881 ENSRNOT00000063634 2 1 1 60 16 27442834 27442854 ACATAGCACCTTGAATGTACC 58 27442794 27442813 GCTTTAAACCCTGCTTAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052045 ENSRNOT00000088750 3 1 1 62 9 112717746 112717764 GGCTGCTATGTCACATGTG 59 112717702 112717721 CTGAGCATAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038021.1 ENSRNOG00000056631 ENSRNOT00000086120 1 1 1 80 X 37346196 37347015 ATTCTCATTCCAGAGCTCCA 59 37346135 37346154 CCTTTCCATTTCTGTGTCCT 58 Novel Rattus norvegicus 81 SNORA32 ENSRNOG00000053107 ENSRNOT00000091035 1 1 1 64 6 88973485 88973503 ATTTGCTGTGGACATGACC 59 88973529 88973549 GCTATCCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.3 ENSRNOG00000061318 ENSRNOT00000089296 1 1 1 60 1 84102808 84102826 GGCAACAGAACAACAGTGG 60 84102766 84102785 GCTTCTAACATGACGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076943,ENSRNOT00000007671 2 2 4 80 7 115843135 115843348 TCCCTTAAGAAATGTTTGGAGG 58 115843076 115843095 GTCATTCCAACAGTTCAGGT 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000054491 ENSRNOT00000079930 2 1 1 60 9 65335354 65335372 GGTTGGAATAGGAGCTTGC 59 65335312 65335330 CTGGAGGTACTGCAATACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037347.1 ENSRNOG00000046532 ENSRNOT00000073358 1 1 1 60 X 19215745 19215765 TCTTGGGATTAGAATCTGCAC 58 19215705 19215723 TCCTACCACTAATGGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052806 ENSRNOT00000079759 2 1 1 64 9 41623437 41623455 AGTAGGTGGCAGTGAAGAG 59 41623391 41623415 CTGATTATTGAGATGTTCACTGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052890 ENSRNOT00000089626 1 1 1 76 9 72452926 72452944 TGAGATTTATCCGAGGCGG 59 72452868 72452886 AAGTAGTTCCCTCAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056313 ENSRNOT00000086604 1 1 1 60 X 32227781 32227799 GAGAAGATTAGCATGGCCC 58 32227823 32227841 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056159 ENSRNOT00000088019 1 1 1 60 X 119402174 119402193 TGACTGCTGTATCCCATGTG 60 119402133 119402151 AGCATAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059854 ENSRNOT00000086430 1 1 1 60 2 188074577 188074596 TTAATGGTGTGGTCCTTCTG 58 188074618 188074637 CAGTTTATTCTGGCATGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061723 ENSRNOT00000090585 3 1 1 60 6 8351891 8351910 CACAGAGGTGATTGGTATGG 58 8351932 8351951 TACAACGCTTCTCAGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059241 ENSRNOT00000092220 1 1 1 60 2 205444437 205444455 TGACTCCTGTGGGAAAGTC 59 205444395 205444414 GGAGTGTGAATACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057405 ENSRNOT00000077326 3 1 1 60 9 40909089 40909109 CCTGTGTCACATGTATGTCAG 59 40909131 40909149 GTCGGAGCACAAACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059999 ENSRNOT00000078954 1 1 1 60 X 20520609 20520627 CCACAGTCAAGAAGGTGGT 60 20520651 20520669 CAGCATATACCGAGTGCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027157.1 ENSRNOG00000045923 ENSRNOT00000072610 3 1 1 61 17 17137023 17137042 TAGCTTTGTAGACCAGGCTG 60 17136981 17136999 ACTTAGGAGGCAGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047701 ENSRNOT00000072112 2 1 1 60 6 7157055 7157073 TCTCAGAAGCTAAGCAGGG 59 7157094 7157115 TAACCACTCTGTTTCTCCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054461 ENSRNOT00000078521 2 1 1 60 3 38450103 38450121 GAGTTCAATGGCAGAGGTG 59 38450143 38450163 GGAGAGTAGTCTGAATTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059693 ENSRNOT00000091783 3 1 1 60 9 19851922 19851942 GGTACATGGTCTGTTTGAGGA 60 19851882 19851900 TTCCACTCTGTCTAGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.2 ENSRNOG00000056545 ENSRNOT00000087849 1 1 1 60 2 144807425 144807443 AGAATGTGGCGAGATAGGA 58 144807383 144807404 CTTATTGTGTTGGTACTGAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068612.1 ENSRNOG00000048984 ENSRNOT00000073084 2 1 1 60 9 112127797 112127818 TCTTCCGTTTCTATAACGACAC 58 112127838 112127857 ATGAGGGAATATGACTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056424 ENSRNOT00000081890 3 1 1 60 9 51519342 51519364 GATACAGAGAAGATTAGCATGGC 59 51519304 51519323 GAACGCTTCAAGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056924 ENSRNOT00000082189 1 1 1 60 X 40434024 40434043 TGTCACATGTGCATCATCAG 59 40433983 40434001 TCAGAACACTGAGCATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054241 ENSRNOT00000079402 1 1 1 60 X 133363725 133363744 TTCGGTCAAGGGTATACGAG 59 133363684 133363702 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010460.1 ENSRNOG00000061443 ENSRNOT00000087798 3 1 1 81 2 136828539 136828561 TACATGATCCCGGTATCTCAG 59 136828604 136828622 GTTTCTTTCCCTCCAGCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058605 ENSRNOT00000089106 3 1 1 60 3 103074712 103074733 GTAGATGTGGTTGCTACATGTG 60 103074753 103074772 GACATACTCTCCTTTCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129244.1 ENSRNOG00000045893 ENSRNOT00000071527 1 1 1 60 15 23733357 23733375 TGGACTTGGAGTCAGAAGC 59 23733315 23733333 ACACTCAACCAGTGAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061907 ENSRNOT00000084693 1 1 1 60 16 28643321 28643340 TTCCCAATAAGGACCTGGTG 59 28643363 28643381 TTCATACCCTACCCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061709 ENSRNOT00000079003 1 1 1 60 16 71097902 71097924 CAGAACAGCAGAGATAAGATGAG 59 71097864 71097882 TTTCCTGACTTTGCATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000056449 ENSRNOT00000089605 1 1 1 60 16 90164113 90164134 TAAACATGCCTGATCTCTTCTG 58 90164154 90164173 GTACTAAGAAGGCTTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055960 ENSRNOT00000091895 3 1 1 60 X 77683594 77683615 GAAGAGACAATGATCGAGAAGG 59 77683555 77683574 TCTGGAGGGAAATGAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055228 ENSRNOT00000077714 1 1 1 63 7 106603052 106603072 CAGCAATGAGCAATAATCACC 58 106603097 106603115 GAGTTGTGCATGAGTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000080722 2 1 2 81 5 47834594 47834613 CACTTTGAGACTTTCAGCAG 57 47834655 47844383 CTGGTCAGATTGACTTATCGT 58 Novel Rattus norvegicus 81 AABR07063272.2 ENSRNOG00000058265 ENSRNOT00000084079 3 1 1 80 6 25622278 25622298 AATGGTTCAGAGGAAGAGGTC 60 25622334 25622359 TACTAAATTCCCTTTCTCTAGCCTC 60 Novel Rattus norvegicus 81 SNORA26 ENSRNOG00000058802 ENSRNOT00000079384 1 1 1 60 3 10355869 10355887 CAGGCTAACACAGAAGGGT 59 10355910 10355929 GAGGAGTGAAGCCTCTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060692 ENSRNOT00000078334 1 1 1 60 16 41019740 41019760 TAGGTGGCAGAGAAGATAGAG 58 41019700 41019718 TCAGATGCTCGTAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045363 ENSRNOT00000070630 2 1 1 61 16 59859189 59859207 TGAATGCTCCTGATCTCGT 59 59859231 59859250 GATGCCCAGCATAATTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051985 ENSRNOT00000080273 3 1 1 73 6 67902182 67902200 TTTGAGGCACGATTGTTGC 60 67902234 67902255 GTAGAGAATGATTGTGGTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056072 ENSRNOT00000082479 2 1 1 68 12 11622121 11622140 GAATGTGGAGTTCGAAGCTG 59 11622072 11622090 CAACCCATCTGAGCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053049 ENSRNOT00000087209 1 1 1 60 2 67847640 67847659 TCTGGCTGGTTAGGAATGTG 60 67847681 67847700 TTTGGGAGGGACATACATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027518.1 ENSRNOG00000052192 ENSRNOT00000080609 1 1 1 80 17 35125617 35126291 ATATTTGAAGGTGCCCTTGG 58 35125556 35125575 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 SNORA7 ENSRNOG00000056323 ENSRNOT00000079576 2 1 1 60 6 145777896 145777914 AGGTACCCATTCCATTCCC 59 145777854 145777872 ATGTTGCAGAGTGTCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058759 ENSRNOT00000089679 3 1 1 60 16 13644470 13644491 GGTGTTACAGGTATCAGATGTG 59 13644512 13644530 GCATGACATAGGCTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055820 ENSRNOT00000078568 1 1 1 60 X 51002717 51002738 ATACAGAGAAGATTAGCATGGC 58 51002678 51002697 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047614 ENSRNOT00000074507 1 1 1 60 X 10497494 10497512 CAGCCATACACCTTGAACG 59 10497452 10497470 GTACTAACAGGCCCGATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055069 ENSRNOT00000088754 1 1 1 60 X 110858507 110858528 AAGGTTGACTCAGCTAATTTGG 59 110858468 110858489 ATGAATGGTAAGGTTGAAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057600 ENSRNOT00000083602 3 1 1 60 3 4918899 4918919 AGAAGGGTAAAGGAAGTCTCC 59 4918941 4918959 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053257 ENSRNOT00000077831 3 1 1 60 3 98122034 98122054 ATCAGTAAGCCATTTCCAGGT 60 98121994 98122012 GTCAGCTTCAGACCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043456.1 ENSRNOG00000052028 ENSRNOT00000079270 1 1 1 80 19 28746510 28751432 ATCCATGAACAACAGGCCA 60 28746448 28746466 ATTGACATGACTGCCTCCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054337 ENSRNOT00000078164 2 1 1 60 10 53921348 53921366 GAGGACTGATCTTCTGCCA 59 53921390 53921408 TTTGGAGGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035854 ENSRNOT00000053977 2 1 1 60 4 17536156 17536174 CGATCTTGTCTGATCTCGG 58 17536114 17536134 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060018 ENSRNOT00000054649 1 1 1 60 9 100762548 100762568 CGCCCTATCTCATCTGATCTC 60 100762587 100762608 CCATCCAAATACTAACCAAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057422 ENSRNOT00000086088 1 1 1 60 9 86318221 86318239 ACCTCCAAACAAACATGCG 59 86318179 86318198 CTCTACCAGACACTGAAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030779.1 ENSRNOG00000047029 ENSRNOT00000074339 1 1 1 60 10 104003790 104003808 GTCTGCGTGTTGTTATGCC 60 104003748 104003766 ATTCGTGGTGTCTGGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052073 ENSRNOT00000079729 2 1 1 60 9 108838815 108838833 GAGAGGATGACCTCTCCTG 58 108838855 108838875 GCTACTTGTATACCCTTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096930.1 ENSRNOG00000046713 ENSRNOT00000075560 2 1 1 63 4 173988144 173988162 CAAAGCCTGAGAACGTGAC 59 173988188 173988207 TATCTCCTGAGAAGCCTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041970 ENSRNOT00000063723 2 1 1 61 1 270635199 270635218 AATGCACCCAATCTTGTCTG 59 270635240 270635260 TTTAAGTACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071000.1 ENSRNOG00000051416 ENSRNOT00000047078 2 1 1 60 8 95943843 95943861 TGGCTCTCAGATTGTTGAC 58 95943885 95943903 CACAGTGATGTCAGATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 2 1 1 130 8 72904134 72904152 ATCCTCAGGCAGAATTCCT 58 72904247 72904267 CCTGGGAGGACTGTTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 3 1 1 131 8 72904133 72904152 AATCCTCAGGCAGAATTCCT 59 72904247 72904267 CCTGGGAGGACTGTTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029172.1 ENSRNOG00000043856 ENSRNOT00000069123 3 1 1 61 10 11310937 11310955 TGTGTCCTGGAACTCACTC 59 11310980 11310998 AGAGGTAGGTGGATCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060567 ENSRNOT00000079613 1 1 1 63 10 94006626 94006644 GAGAAGATTAGCATGGCCC 58 94006581 94006600 TCTCTGATTGAACGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057665 ENSRNOT00000084948 2 1 1 61 6 99820939 99820957 GAGAGGAGATTAACGTGGC 58 99820982 99821000 AATATGGAAGCCACACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD124 ENSRNOG00000055792 ENSRNOT00000082994 3 1 1 60 10 86626779 86626797 AGGATTCTGAGCCTCAGAG 58 86626737 86626757 ACTTTCTGAAGGAAGGTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058858 ENSRNOT00000086322 1 1 1 60 3 40696288 40696306 GAGAAGATTAGCATGGCCC 58 40696246 40696265 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016966.1 ENSRNOG00000051721 ENSRNOT00000087303 1 1 1 60 15 5619898 5619918 GCATCACTGTGATCTTGATGG 60 5619940 5619958 GGCCTCAGTAGAAAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033943.1 ENSRNOG00000001675 ENSRNOT00000002277 3 1 1 65 11 45647554 45647572 GAAGGACTCTCACCTCCAC 59 45647601 45647620 GATGAAGTGCATGAGTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036723.1 ENSRNOG00000060291 ENSRNOT00000029285 1 1 1 60 X 881485 881503 CGGCTCTCAGATTGTTGAC 59 881443 881461 CACAGTGATGTCAGATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057336 ENSRNOT00000090117 2 1 1 61 3 20380839 20380862 CAGTACAGAGAATTAGAATGGCTC 59 20380879 20380900 TGGAATGCTTCAAGAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027753.2 ENSRNOG00000047776 ENSRNOT00000049785 3 1 1 67 17 43808860 43808878 TGAACTCGTTCGTGAACGA 60 43808912 43808930 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056334 ENSRNOT00000079064 2 1 1 62 10 7629461 7629480 TACAGGAAGATTAGCAGCCC 59 7629505 7629523 ATATGGAACGCTTCAGCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059535 ENSRNOT00000083670 2 1 1 60 4 143869780 143869798 GAGACTGGTTTGGTCAGGA 59 143869818 143869840 AGAGTTAGTTAGGAGGTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071161.1 ENSRNOG00000050528 ENSRNOT00000072472 3 1 1 114 8 102877429 102877450 TTGGACCAGAGAAACACCTC 60 102877521 102877545 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07067506.1 ENSRNOG00000016444 ENSRNOT00000021996 1 1 1 60 9 49795662 49795680 CAAACTTCAAGAGCAGCGA 59 49795620 49795638 TCAATGCCATTCCTGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 1 1 1 60 15 43543654 43543673 AAAGCCCAGTTTAACACCC 58 43543695 43543715 ACAAAGGAGTCAGTCTTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051400 ENSRNOT00000081216 3 1 1 60 1 31443477 31443496 ATTCTAAGAGTGGTGCCTCC 59 31443518 31443537 AAACTCACCTCTCCACTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000061702 ENSRNOT00000082626 1 1 1 60 4 35850017 35850036 ATTCATGTTCATTGTTGCCC 57 35849976 35849995 TCGTCTGTTTCCATTTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042010 ENSRNOT00000063763 2 1 1 60 1 144716477 144716495 GAAGCTAAGGAGGGTCAGC 60 144716435 144716454 TAAGACAGTTCCAGGGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052473 ENSRNOT00000080994 1 1 1 60 6 73437220 73437238 GAGAAGATTAGCATGGCCC 58 73437262 73437280 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030375.1 ENSRNOG00000022375 ENSRNOT00000034515 2 1 1 60 10 83147508 83147528 AAGCTGGAGTGTATACAAGAG 57 83147468 83147487 ATTCTTTGTTCTTCCGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD10 ENSRNOG00000055390 ENSRNOT00000079842 3 1 1 61 10 56273280 56273299 CTGTTAACCTTAGCCCAGGT 60 56273238 56273256 TTCCCTGATAGGTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034098.1 ENSRNOG00000052255 ENSRNOT00000089097 3 1 1 84 11 52408702 52408722 GAAGTCATGAGCCAAATGGAC 60 52408635 52408656 CATGAGGAGCGAAGAAGGT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000052355 ENSRNOT00000089150 2 1 1 60 7 18641155 18641173 TCGGTCAAGGGTATACGAG 58 18641113 18641132 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD62 ENSRNOG00000056657 ENSRNOT00000078591 3 1 1 60 3 11240162 11240182 CCAATAGATCCTTCTGACCCT 59 11240203 11240222 TCACTGTCCTCTTCATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000052185 ENSRNOT00000079404 3 1 1 60 10 1137023 1137044 ACTGAACAACCCTGATATTGTC 59 1137062 1137083 AAGTACAAACCAAGTCTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027870.1 ENSRNOG00000059510 ENSRNOT00000080800 2 1 1 80 17 47763471 47776479 CCTTCCCAGAATGAAGTCCT 59 47776520 47776540 CACATCAGGTTTGAAAGGGTC 60 Novel Rattus norvegicus 81 AABR07069490.1 ENSRNOG00000039627 ENSRNOT00000060753 3 1 1 60 8 24083586 24083606 GTTGCTTTCCAGGAAGAAGTG 60 24083624 24083646 GAAGATCAGCTCCTTCTAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.1 ENSRNOG00000030827 ENSRNOT00000047083 1 1 1 99 3 75794084 75794103 ACCAAGTTCTGCCTACTCTC 59 75794159 75794185 CACATCCTTATTGTAAATCAGAGGG 60 Novel Rattus norvegicus 81 SNORA28 ENSRNOG00000053220 ENSRNOT00000083113 2 1 1 60 2 153754554 153754574 CTGTCTGACACAATTTGAGCT 59 153754514 153754534 AAGAGAACACCGGAATAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059236 ENSRNOT00000085489 3 1 1 60 X 73798419 73798440 AATGCAGAGAAGATTACCATGG 59 73798380 73798401 GAATGCTTTGAGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054598 ENSRNOT00000087639 1 1 1 60 2 260837267 260837285 GCTTAGATAGCATGCAACG 57 260837225 260837245 GGCTCTTCTTACTTGTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051671.1 ENSRNOG00000053329 ENSRNOT00000079487 2 1 1 60 3 19072197 19072215 CAATCAGCTCTGTGGAGAC 58 19072239 19072257 GTACTACTCCACTGCTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056123 ENSRNOT00000086102 1 1 1 60 2 20742181 20742200 GCTGCTGTGTTATATGTGGG 59 20742223 20742241 GAAGTCTGAGCTTAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015889.1 ENSRNOG00000059624 ENSRNOT00000090951 1 1 1 80 14 84136951 84136972 TCATACAGTCTCAACAGATCAC 58 84137013 84137032 GAGCCAATGCTGAATTAGC 57 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000057863 ENSRNOT00000091917 3 1 1 66 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951563 186951583 CATTCAGATGTTCACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.2 ENSRNOG00000060924 ENSRNOT00000087056 2 1 1 60 1 174134778 174134801 TTAATCGAGACTAGAGTCACATCC 60 174134820 174134838 ACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053739 ENSRNOT00000089489 2 1 1 67 3 7399570 7399588 CTTATCCATTGCACTCCGG 58 7399521 7399539 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056775 ENSRNOT00000077669 1 1 1 62 3 99131094 99131112 GGCTGATGTGTCACATGTG 59 99131050 99131068 CTCAGCATAGACGTAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056813 ENSRNOT00000092228 1 1 1 60 3 136819821 136819839 GTCCTTAGAGGCTTTGCAG 58 136819862 136819881 TCTCTACTACCTACTGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053796 ENSRNOT00000082263 1 1 1 60 10 57319451 57319473 GTTACTAGAGAAGTTGCTCTGAC 59 57319413 57319433 ACTATGTCTCATCCTCATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA23 ENSRNOG00000057923 ENSRNOT00000087551 1 1 1 60 1 174684276 174684297 GTTGTCATCTATGTCTGGTAGC 59 174684316 174684336 TGGATAGCAAGATCTGAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131024.1 ENSRNOG00000058001 ENSRNOT00000082630 2 1 1 80 3 170299188 170299279 TACAGCCTACACTACGTACAC 59 170299318 170299339 TAGGCTGTAGTGTAGTATAGGC 58 Novel Rattus norvegicus 81 AABR07018191.1 ENSRNOG00000058716 ENSRNOT00000088793 2 1 1 80 15 46297121 46297140 CCACCTTTCAGTCTTTGTGG 59 46296223 46296322 GGGTAATATGCTGACGTGC 59 Novel Rattus norvegicus 81 SCARNA15 ENSRNOG00000055316 ENSRNOT00000087677 2 1 1 60 1 143360165 143360187 GGAGACTAAGACAATAGAGTCCT 59 143360206 143360225 TCATGTAGGAGGCTAAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060191 ENSRNOT00000081341 3 1 1 60 12 43981894 43981913 CCTCTGTCAAGAGCATACGA 59 43981936 43981954 GGAAGGTTGAGAACCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030156.1 ENSRNOG00000046186 ENSRNOT00000074522 1 1 1 80 10 72247345 72247367 AAGAAGACAACTTTCCATGGC 59 72247285 72247306 ATATGTCCATGCAGAAACACAG 59 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 2 2 2 80 14 83884380 83885384 AAAGTGAACTACGTCCCGT 59 83884318 83884337 GGAGTAGCAGAAGGAAGGTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059152 ENSRNOT00000080302 1 1 1 60 2 178608278 178608299 GGAGTGACACAAATGATGTCAG 60 178608318 178608338 CTTGGTGAAGATTTGTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000074856,ENSRNOT00000057756 2 3 5 80 6 114780461 114783539 TTCAAAGACTTCAGAGGTTCC 58 114780401 114780419 AGAATCTCCGTGGAGACTG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 2 2 2 80 7 116558115 116559924 GTTGTTGTGAGCTCTGTAAGAG 59 116558056 116558075 CTCAGCAGTTTGAGAACTCG 59 Novel Rattus norvegicus 81 AC111319.3 ENSRNOG00000059489 ENSRNOT00000088343 3 1 1 106 9 71296250 71296270 GACTGTATTACTCCAGCACTC 58 71296342 71296363 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002624.1 ENSRNOG00000028449 ENSRNOT00000052231 3 1 1 60 1 77830122 77830140 ACATGATCAAGGGTGTGAC 58 77830080 77830098 AAGTGAGCATACACAGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058433 ENSRNOT00000085169 2 1 1 60 14 105497923 105497944 TGTGTTACATGTCACATGTCAG 59 105497884 105497903 ACTGAGCATAGACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098622.1 ENSRNOG00000021123 ENSRNOT00000028681 1 1 1 60 1 222142706 222142727 GTGTTTGGTAGCTTGATTATCG 58 222142748 222142766 CGAAGAGTTGCTGCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098622.1 ENSRNOG00000021123 ENSRNOT00000028681 3 1 1 60 1 222142481 222142499 ATCCTCTCCTGTACCAGGG 60 222142523 222142541 CTGGTCTACTCAGGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058623 ENSRNOT00000090994 3 1 1 60 1 86776338 86776357 CAGTTGCAGATTGAACTCCT 58 86776378 86776398 CCAATCAAGTGCAGTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 1 2 2 85 7 142860724 142861286 TGGATGTTAGCACATGACCA 60 142860658 142860676 TTCCTTCACTGCTGACCTG 60 Novel Rattus norvegicus 81 AC119536.1 ENSRNOG00000046544 ENSRNOT00000073161 2 1 1 60 12 15974070 15974088 GAACTCACAGAGATCTGCC 58 15974028 15974047 GTAGCACATGCCTTTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000060695 ENSRNOT00000088583 3 1 1 68 1 100224545 100224563 CTGTGATGTTCAGCACTGG 59 100224595 100224613 ACAGGTGTCAAAGGTCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC093965.2 ENSRNOG00000056321 ENSRNOT00000089960 2 1 1 80 10 40373857 40373880 GCTTCTTCAAGAGATTTCCTGG 59 40373798 40373818 CATCTCCCATCCTCCATATGG 60 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000054649 ENSRNOT00000092055 1 1 1 60 10 15536676 15536694 CATGGGATCTCCAACTGCA 60 15536634 15536652 TATGATGACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061707.1 ENSRNOG00000052718 ENSRNOT00000079266 2 1 1 60 4 140503343 140503364 AGTGGACCAAAGCTTATTACCT 60 140503304 140503322 AGATGATGAAGTGGACCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060828 ENSRNOT00000078808 2 1 1 60 2 251466915 251466937 GGAACGATACAGAGAAGATTAGC 59 251466877 251466895 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069011.1 ENSRNOG00000055895 ENSRNOT00000089124 1 1 1 80 8 5201990 5202009 CCACTAACATTCGAAAGGGT 58 5201725 5201948 GTAAAGGTCACCATGGTCTC 58 Novel Rattus norvegicus 81 SCARNA4 ENSRNOG00000054885 ENSRNOT00000088414 3 1 1 64 14 17128376 17128394 GCAACAAAGGGTTGGAGAG 59 17128330 17128348 GGTAATACAGTCAGCCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094647.1 ENSRNOG00000055176 ENSRNOT00000078000 1 1 1 60 1 251600464 251600485 GCATATTGCAATGAGAATGAGG 58 251600425 251600446 CAGCCTTCTCTTTGATCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135645.1 ENSRNOG00000054126 ENSRNOT00000090147 1 1 1 60 3 80885761 80885779 GTAGAAGAGCGATTCAGCC 58 80885719 80885740 ATTCTCCTTACCTGTATGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035114 ENSRNOT00000053237 2 1 1 62 12 24523097 24523115 CTAAGCAGGGTCGGATCTG 60 24523141 24523159 AAAGCACCTGGTATTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061385.2 ENSRNOG00000060843 ENSRNOT00000078142 2 1 1 60 4 121089073 121089097 GATACCTAACTGATCTAGTCCTGAG 60 121089115 121089133 AAGTGGTAGGCGACATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067762.1 ENSRNOG00000055383 ENSRNOT00000090305 2 1 1 80 9 61738619 61738648 ACGAATGGACAAAGGATGG 58 61738691 61738710 TCCAGTAAACAACATCTCCC 57 Novel Rattus norvegicus 81 AABR07012072.1 ENSRNOG00000047458 ENSRNOT00000072115 3 1 1 78 2 184826993 184827012 CAGCAATGAATGCTTCAGGA 59 184826934 184826954 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_1002.4 ENSRNOG00000057321 ENSRNOT00000087976 3 1 1 80 14 100342079 100355170 AAATGTGCTCACACTTCGA 58 100355214 100355232 AACCAGAGTTGTCCAAGTC 57 Novel Rattus norvegicus 81 AABR07051658.1 ENSRNOG00000056447 ENSRNOT00000090508 2 1 1 60 3 18787732 18787754 CCCAAACTCTGGATTTATGACAC 60 18787772 18787792 CACTGAAGCAATTTGGAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044596.1 ENSRNOG00000057037 ENSRNOT00000083453 1 1 1 111 20 12365518 12365540 TGAGATCTCACCATGCCAC 60 12365425 12365445 TTGGTGACATCCTCTAGTCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056917 ENSRNOT00000078229 3 1 1 60 2 219485063 219485082 GGGAGATGGCATGATATCGA 59 219485022 219485042 TTGGAGCACATTGAGTAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059877.1 ENSRNOG00000039626 ENSRNOT00000060755 1 1 1 60 4 39727898 39727916 TGCTCAAAGAAGTGGACTG 58 39727856 39727874 GTTGGAGAAGTGGCTAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000052744 ENSRNOT00000086241 3 1 1 60 2 146466917 146466941 GTTACTAGAGAAGTTTCTCTGACTG 59 146466958 146466977 GCTATGTCTCGTCTTTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052722 ENSRNOT00000079082 2 1 1 61 1 116723488 116723509 CAACAGAAAGTCTAGAACAGGA 58 116723448 116723469 GATAAGCATGGATCAATTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055205 ENSRNOT00000089796 1 1 1 60 14 14319594 14319615 TGGAAATACAAGGTGTAGTAGG 57 14319555 14319573 GCAATACCAGGTCAATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000055001 ENSRNOT00000089120 2 1 1 60 1 174133775 174133795 CTACTGACCTTATTCACTGGC 58 174133816 174133835 TGTCACTAACCTGGTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060757 ENSRNOT00000080209 1 1 1 60 14 84034274 84034292 GAGAGGCTATGTCTACGCC 60 84034314 84034334 CTAGGCCACTTAATCACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057361 ENSRNOT00000085324 1 1 1 60 14 97920960 97920978 AGAGACTTTGACAGCCCAG 59 97921000 97921020 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004876.1 ENSRNOG00000018083 ENSRNOT00000024338 1 1 1 60 1 164807640 164807661 AGGTAAAGTTCATGGTTCTCTG 58 164807682 164807700 CATCTTGGGAGTCTGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059537 ENSRNOT00000078018 1 1 1 60 1 105178696 105178714 AGCCAATGAGGTTTATCCG 58 105178737 105178756 GTCCAGTGAAACACTAATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076224 1 1 2 80 X 70440110 70440226 TGGAACAACTTGCTAGATGG 58 70440049 70440067 CTGTTCGCACCATAGAGTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000055158 ENSRNOT00000091183 2 1 1 61 1 84529947 84529968 ATACAGAGAAGATTAGCATGGC 58 84529907 84529928 TGGAAGGCTTCATGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053871 ENSRNOT00000089811 3 1 1 60 1 261936143 261936161 CATTGAGGTACCACTGCTG 58 261936101 261936122 CGTAGTTATAGCCTGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.2 ENSRNOG00000056830 ENSRNOT00000086338 3 1 1 60 4 103331161 103331179 GTCTCCTCAGCTTCTGACC 60 103331119 103331138 GAACCTGTCTGAGACTCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004263.1 ENSRNOG00000048799 ENSRNOT00000073974 2 1 1 60 1 134605331 134605350 TGTAGCCCTGATTGTCTTGG 60 134605372 134605391 GATCTCTGAGTTCAAGGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060705 ENSRNOT00000090931 1 1 1 61 1 213992505 213992523 CCTAATCCCTGCTGGTCAG 60 213992548 213992566 CTAGGATGCTCTGGTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD52 ENSRNOG00000057819 ENSRNOT00000081740 1 1 1 60 2 120783162 120783185 CAATGAGTTCTTTGCAGACTAGAG 60 120783204 120783222 TACCTTGCATTCTCGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052046 ENSRNOT00000085375 2 1 1 60 14 9916353 9916375 GGAACGATACAGAGAAGATTAGC 59 9916315 9916333 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052712 ENSRNOT00000088262 2 1 1 68 1 27540920 27540938 AAGTATTGCTGGTGTGGCT 60 27540870 27540889 AACATAGCTTCCCTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055979 ENSRNOT00000080636 3 1 1 60 6 92997125 92997144 CCAATGAGGTTTATCCGAGG 58 92997084 92997103 GCTACTGTGAATAGAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030798.2 ENSRNOG00000057734 ENSRNOT00000077158 1 1 1 80 10 104920766 104920785 ACCATTTCCCTATTACCGCT 59 104918381 104920723 CTCCCAGGACTTGAACCTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059275 ENSRNOT00000077115 1 1 1 62 2 5855378 5855396 GAGTTCTTAGGTGGCAGAG 57 5855334 5855354 TGTTCATAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057265 ENSRNOT00000089084 1 1 1 60 2 33531927 33531945 GCTTGATCTAGCTGCTGAG 58 33531885 33531906 ATATGAAGTGGTAAGGAAGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053716 ENSRNOT00000085818 1 1 1 60 14 19919461 19919479 GAATGGCTTCTGTGTCACG 59 19919419 19919437 TTAGACATAGCCTCCCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058945 ENSRNOT00000086686 2 1 1 82 14 113190855 113190873 GTAAGGTCACCCAATGCAC 59 113190791 113190812 GGGCAATATGAATAACACTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047771.1 ENSRNOG00000061900 ENSRNOT00000083099 2 1 1 80 5 46752103 46752126 GAGATTTCACCTCACATGCG 59 46752042 46752061 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059083 ENSRNOT00000086713 1 1 1 60 1 238986083 238986101 AGAGACTTTGACAGCCCAG 59 238986123 238986143 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006619.1 ENSRNOG00000050486 ENSRNOT00000071075 2 1 1 215 1 242809206 242809224 CATCGAGAGCATCATGCAG 59 242809005 242809023 CAGTGATGCTCTTCCTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA20 ENSRNOG00000054893 ENSRNOT00000087735 1 1 1 60 1 164952950 164952969 GATAGGAGCGGTTATACGCA 60 164952990 164953010 CTTCATCTCCACGTACAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064048.1 ENSRNOG00000050810 ENSRNOT00000073963 2 1 1 82 6 62336615 62336634 ATCCCTGAAAGAATTCCAGG 57 62336810 62336829 CGTGTTCTTTCTTGATTGCT 57 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000054743 ENSRNOT00000079198 1 1 1 60 1 116711090 116711111 ACAACAGAAAGTCAAGAACAGG 59 116711051 116711071 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005838.2 ENSRNOG00000054087 ENSRNOT00000089033 3 1 1 62 1 202829580 202829598 TCCAAGGCTGTCTGTTCTC 59 202829624 202829642 CTGCTGTTGGTAACAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA30 ENSRNOG00000056939 ENSRNOT00000088627 1 1 1 60 1 198974371 198974390 CTTGATTACATCCTTGCCCT 58 198974413 198974431 TGTTCCCTTGAGTAACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054623 ENSRNOT00000085559 1 1 1 60 1 72342490 72342508 GAGAAGATTAGCATGGCCC 58 72342532 72342550 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000056544 ENSRNOT00000084387 1 1 1 65 4 169403525 169403543 TATTCAGTGCAGTTCAGGG 57 169403572 169403590 CGCCAATTTCAATGTTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008681.1 ENSRNOG00000053969 ENSRNOT00000078674 1 1 1 81 2 70494159 70496878 GCTATAAGAGAACAAGTAGAAGCC 59 70496915 70496936 ACTGTTTGATTGTGGTTTCCTG 60 Novel Rattus norvegicus 81 AABR07015055.1 ENSRNOG00000056747 ENSRNOT00000088111 2 1 1 61 14 46523912 46523930 GAGAGGGTGTAAATCTCGC 58 46523955 46523973 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053253 ENSRNOT00000088598 1 1 1 60 1 72978178 72978196 ACGTAGACTACCTTCTCCC 58 72978136 72978158 CTCTAATGGAGGAATACAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053253 ENSRNOT00000088598 2 1 1 60 1 72978178 72978197 GACGTAGACTACCTTCTCCC 59 72978137 72978158 TCTAATGGAGGAATACAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051709 ENSRNOT00000085571 3 1 1 60 3 54140902 54140925 TGTAGTATCTAAGTACATGGAGCC 59 54140942 54140962 ATTCAATCTCCTGCTCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055997 ENSRNOT00000090854 1 1 1 60 1 94204148 94204167 AGAAGTTAGCATGGTCCCTG 60 94204107 94204125 AAACCATGGTACGCTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097183.1 ENSRNOG00000036856 ENSRNOT00000055314 1 1 1 85 5 173565633 173565651 CTACCACCAGAACAGCTCC 60 173565702 173565720 CACTGAGCCAGGAGTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056949 ENSRNOT00000090093 2 1 1 60 1 75450348 75450369 GTGTACCTGACTAATCTTGGTG 59 75450387 75450408 GTATAGAGGAGATAGGGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014239.1 ENSRNOG00000057207 ENSRNOT00000050446 2 1 1 60 14 5837787 5837806 CATGATAATTGGGCCTCCAC 59 5837823 5837847 CTCTATCTTAAGGCTGTATATTCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055501 ENSRNOT00000084539 1 1 1 60 1 221277158 221277177 CAATACAGAGGTGCTCAGTG 58 221277117 221277135 GATGCCTTGCAAGTGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015719.1 ENSRNOG00000005077 ENSRNOT00000006734 1 1 1 60 14 72259726 72259747 GTGGTTGACTCTGATAACTTGG 59 72259768 72259786 GTTCTTGGCTGAAGTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060997 ENSRNOT00000087770 3 1 1 60 5 69035765 69035787 GATACAGAGAAGATTAGCATGGC 59 69035727 69035746 AAAGAGGTCATGAATTGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057801 ENSRNOT00000081166 3 1 1 81 2 30580277 30580295 TCTGAGGCACGATTACTGC 60 30580214 30580233 TTGGATGCTAAAGAATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000061370 ENSRNOT00000088272 3 1 1 60 Y 646173 646192 ATGCATTTATGGTGTGGTCC 59 646132 646150 ATGCTGGGATTCTGTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024877.1 ENSRNOG00000058038 ENSRNOT00000083254 3 1 1 81 16 20640689 20640707 CATCACTCTGCATCCATCC 58 20639811 20640284 CCTGTCAGCTTTCTTCTCAC 59 Novel Rattus norvegicus 81 AABR07067763.1 ENSRNOG00000060678 ENSRNOT00000079058 2 1 1 112 9 61812591 61812610 ACCAGTCACAGTACTGGAG 58 61812685 61812705 CCCATATGTTCCTGTTGAGTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000056835 ENSRNOT00000081846 3 1 1 60 Y 83952 83970 CCCGATCTCGTCTGATCTC 59 83910 83930 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055792.1 ENSRNOG00000046029 ENSRNOT00000040134 3 1 1 87 7 10091422 10091443 CTATGAATGTGATCAGTGTGGT 58 10091487 10091511 TCATAGGGTTTCTCCAGTATGAG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000046938 ENSRNOT00000075492 1 1 1 60 14 91220555 91220576 CTCAGAAGCTATACAGGGTCAG 60 91220597 91220615 ATGACGCCTCTTCTCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061801.2 ENSRNOG00000060820 ENSRNOT00000083660 1 1 1 80 4 144917326 144917345 AGGACACAATGAGAAGACCA 59 144917388 144917408 AGATAGTTTCTGGCCCGAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058573 ENSRNOT00000079603 2 1 1 60 12 2707017 2707037 GGGTTGATCTAGCTGATATGG 58 2707056 2707077 ACGGAATTGTAAGGGATAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000054254 ENSRNOT00000079669 3 1 1 69 14 81589174 81589194 GGGCTAAGGTGTCTATTACAG 58 81589225 81589243 CTGCCACAATCAGACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036374.2 ENSRNOG00000057023 ENSRNOT00000084392 3 1 1 61 12 40529585 40529604 TGACATTGTCATCGCTTCTC 58 40529625 40529646 TGACGATGTCATCTTACTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058706 ENSRNOT00000083388 1 1 1 60 14 110455652 110455670 TTATCCATTGCACTCTGGG 57 110455610 110455631 GTCAAGTTTCTCACATTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017564.1 ENSRNOG00000053129 ENSRNOT00000091011 1 1 1 80 15 27091013 27091033 ACTGTCATGAGTAGAGCCT 57 27091075 27091095 AACCCTGAATAATGGAGTGAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052624 ENSRNOT00000080080 2 1 1 60 14 24117453 24117475 GGAACGATACAGAGAAGATTAGC 59 24117495 24117513 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056117 ENSRNOT00000082807 3 1 1 60 14 56222774 56222793 GGTTCTTGTGTCACATGGTC 59 56222733 56222754 ATGCTGAGCATAGACATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004996.1 ENSRNOG00000041603 ENSRNOT00000063356 1 1 1 94 1 173672485 173672503 CTTCAAGTCCTCTGACCTG 57 173672559 173672579 CGTATGTGCACATGTATACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057816 ENSRNOT00000077700 2 1 1 60 14 86881589 86881609 CCATAGAAACTGTGACTGCTG 59 86881549 86881572 GTGACTAAATTCATCCTGAACCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059449 ENSRNOT00000082659 3 1 1 61 10 59151746 59151765 CTTGAGTCCAGGAGTTCTGG 60 59151789 59151807 AGAACTTAGTGCGGACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053012 ENSRNOT00000088510 2 1 1 61 1 234086507 234086527 CTCCCACTAGAAGCAATACAG 58 234086466 234086486 CTCTGCTACCTACTGACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052601 ENSRNOT00000079689 3 1 1 60 2 161553368 161553386 ATCATGGACACTTCGAACC 58 161553410 161553428 TCAGACAGGTGTAGTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054317 ENSRNOT00000091900 3 1 1 60 3 31859234 31859254 TACAAATAGCTGCACTCACCT 60 31859276 31859294 TCCTGCAATGGACCTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111734.2 ENSRNOG00000059725 ENSRNOT00000085688 3 1 1 60 13 89243345 89243364 AACAAACAGAAATGCTTCCC 57 89243386 89243405 AATCCGTAGTAACATCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000058531 ENSRNOT00000083854 1 1 1 60 1 116751248 116751269 GACAACAGAAAGTCAAGAACAG 58 116751209 116751228 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000071364 2 1 2 103 18 14931899 14935968 GTTGATAAGGTAATCCCGGT 57 14936034 14936052 CCGTCATAGTTAGCATCGT 57 Novel Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847,ENSRNOT00000083943 2 2 2 84 16 31301557 31301820 CCAAGAGCTGCCTATTCCA 60 31301491 31301509 ATGTGAGGAGCAAGGAGTC 59 Novel Rattus norvegicus 81 AABR07003935.9 ENSRNOG00000049058 ENSRNOT00000075058 2 1 1 60 1 121213079 121213103 TTACTCAGGCTACTGGTTATATTCC 60 121213043 121213064 AGAAGCTTTGGTTATACACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047844.1 ENSRNOG00000047509 ENSRNOT00000073903 2 1 1 88 5 50372916 50372935 CGGTCGAGATCAAGAAAGGA 60 50372841 50372864 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 AC131475.1 ENSRNOG00000049632 ENSRNOT00000074541 2 1 1 60 1 221360468 221360487 GCCTTGAACTCAGAGATCCA 60 221360427 221360445 GTGCATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD73 ENSRNOG00000052487 ENSRNOT00000079032 1 1 1 60 2 185443035 185443053 ATGACAGGATGTTTCGGTC 58 185442993 185443013 CAGCAAGAAATGTTATCGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049293 ENSRNOT00000075643 2 1 1 60 12 29014606 29014625 ATCTCAGAAGCTAAGCAGGG 59 29014565 29014586 CCTAATACTTCCTGGGTGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD15 ENSRNOG00000052293 ENSRNOT00000085357 1 1 1 60 1 164440340 164440358 CACAGTTGTGAGCACTGTG 59 164440298 164440316 CAGACAAATGCCTCTTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010633.1 ENSRNOG00000036425 ENSRNOT00000054537 2 1 1 60 2 144877150 144877169 AGCCGCTGTTAAGAATAAGC 59 144877192 144877210 CTAGCCTTTAACGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 1 1 1 71 7 34484785 34484803 GAATGGAAGGCATAGCGTG 59 34484838 34484858 TAAGGAGGATGAGCACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018132.1 ENSRNOG00000045597 ENSRNOT00000085508 2 1 1 60 15 42270673 42270691 AGAAGCCTACAGAACTCCA 58 42270631 42270649 AATTATGTGACGGGAGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000060780 ENSRNOT00000082218 3 1 1 60 2 32986428 32986448 AGTCCCTAATTTACACAGCCA 59 32986388 32986407 TCGACCATCTTAAAGGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055350 ENSRNOT00000089137 2 1 1 60 1 254303899 254303920 GACAATTCAGGGATGATTAGCA 59 254303860 254303879 AAACCTACTCACATGCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004799.1 ENSRNOG00000010769 ENSRNOT00000014369 1 1 1 60 1 157921174 157921192 ACTGCAACGTTTGATCTGC 60 157921132 157921150 CAAGTCCAAGCGGAAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056991 ENSRNOT00000082565 1 1 1 60 2 82960164 82960182 GAGAAGATTAGCATGGCCC 58 82960206 82960224 TCAATGGAATGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000058048 ENSRNOT00000082128 3 1 1 60 1 6038610 6038633 CTGATAGACCTAGAATGGTTTGTG 59 6038651 6038670 GTTTCCTCTGCATCCTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049348.1 ENSRNOG00000008914 ENSRNOT00000011831 3 1 1 97 5 117973305 117973324 CACAGACAATTACAATGGGC 58 117973382 117973404 GTGATTCATTAGGAACATGGC 57 Novel Rattus norvegicus 81 AABR07036513.2 ENSRNOG00000059134 ENSRNOT00000078837 1 1 1 61 12 45801629 45801649 CACACTCATACACATTCACAC 57 45801588 45801607 TGTGAACGTGTATGAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000058027 ENSRNOT00000082817 3 1 1 66 2 198849059 198849077 CAAGTTCTGCTGCTCATGG 59 198849011 198849030 GTCTGCAGCCAAACTTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054982 ENSRNOT00000079315 1 1 1 60 3 136403883 136403905 CTAGAATGAGAGCATGACATCTG 59 136403923 136403943 ATGGATCTGCAGAATTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051806 ENSRNOT00000088975 1 1 1 60 9 16017833 16017852 AAATGCAAGAGGCACAACAG 60 16017874 16017893 AATGAGAACTGGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001807.1 ENSRNOG00000056478 ENSRNOT00000090895 1 1 1 82 1 58344904 58345124 CGGGACCACAGAAATAGCA 60 58344840 58344858 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057287 ENSRNOT00000086949 3 1 1 60 1 184390213 184390231 GCTGTGTCACATGTGTCAG 59 184390171 184390192 TACACTGAGAGTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000060200 ENSRNOT00000080019 1 1 1 64 1 194979942 194979961 TCAGTCAAACATTCCTTGGA 57 194979897 194979915 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 3 1 1 65 15 31951126 31951336 TCTGGCTTCAACTGAGTGG 60 31951365 31951383 CACTGAGTGATTCTGGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000051798 ENSRNOT00000078145 2 1 1 64 7 82496823 82496841 TGAGGCGTGATTATTGCTG 58 82496866 82496887 TACCTACCTGATGTTTAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000051969 ENSRNOT00000079223 1 1 1 60 1 48030485 48030505 AAAGTGCCATGATCTGAAGAG 58 48030445 48030469 CAGCCATTTCATATAGAGGAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044128 ENSRNOT00000069395 3 1 1 66 20 46580490 46580508 CAGCAGCTAAGCAAGACTG 59 46580538 46580556 AACAACAGTTCCCAACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056296 ENSRNOT00000091361 1 1 1 60 3 114443769 114443788 TCCCTTGCTATTGAGATGGA 58 114443728 114443748 CCACTATCACAAGTCATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048971 ENSRNOT00000074679 3 1 1 60 1 217417690 217417709 ATCTCAGAAGCTAAGCAGGG 59 217417732 217417750 AGGCTATGTTCTTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052084.1 ENSRNOG00000048601 ENSRNOT00000075631 1 1 1 64 3 35661220 35661238 TCTGCACCTTCGAAGATGG 60 35661174 35661192 TATCGTGCTTTCTTTCCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053336 ENSRNOT00000088400 1 1 1 60 3 60690290 60690309 ACACAGAGAAGGTTAGCCTG 60 60690249 60690268 TACCATACAAATTTGCGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058224 ENSRNOT00000085804 1 1 1 60 1 72213440 72213458 GTGGGCAGATGTATCACTC 58 72213480 72213500 CTGAACAAATGGAGTGATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025301.1 ENSRNOG00000060395 ENSRNOT00000082590 1 1 1 100 16 32509992 32510011 GAGCCTGAAGAATTTGTGGT 59 32509748 32509929 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 AABR07063425.3 ENSRNOG00000056970 ENSRNOT00000087960 3 1 1 133 6 30643573 30643591 GATCCCTACAACTCGGTGG 60 30639057 30639075 AGAGGGTGTAAATCTCGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AC098563.1 ENSRNOG00000051917 ENSRNOT00000085652 3 1 1 82 1 215828335 215828360 CCTCCATCTTGTTTCTTCCCT 60 215828273 215828291 GTGGGAAGTCTTCACAGGA 59 Novel Rattus norvegicus 81 SNORD22 ENSRNOG00000056397 ENSRNOT00000079816 2 1 1 91 1 224923863 224923881 TCCTGTCCTAGCTCCAGAG 60 224923935 224923954 CCTCAGACAGTTCCTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052548 ENSRNOT00000086446 2 1 1 60 14 86688749 86688768 CACAACATTGGAGATGAAGC 58 86688789 86688809 TGAGAAGTCGTAGGAATATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017841.2 ENSRNOG00000060250 ENSRNOT00000082666 2 1 1 93 15 31769884 31770682 TACCTCAGAGGAACAAGCA 58 31769499 31769519 CTTGTTGTAAGAATCCTGACG 57 Novel Rattus norvegicus 81 Adora3 ENSRNOG00000050743 ENSRNOT00000082943 1 1 1 80 2 208373761 208373779 CTTCCATCATGTCCTTGCT 58 208373820 208375728 TGGTAACCGTTCTATATCTGAC 57 Novel Rattus norvegicus 81 AABR07015907.2 ENSRNOG00000057861 ENSRNOT00000080341 1 1 1 60 14 85277067 85277088 TGATGATTCCTCTTCCTGAGTG 60 85277107 85277127 GTCAGTTTCTTAGAGGCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054198 ENSRNOT00000085700 3 1 1 60 4 93723022 93723042 ACATGTATCAGTAGGTGACAG 57 93722982 93723003 TAGGCCAGAATACTGATCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002885.1 ENSRNOG00000052023 ENSRNOT00000089393 3 1 1 80 1 88387095 88387113 GCCTGGACTTAGACCAGAG 59 88381879 88387052 TGAAGCATCCTAGTGAGAGC 59 Novel Rattus norvegicus 81 AC141573.1 ENSRNOG00000057637 ENSRNOT00000091017 2 1 1 94 4 84591288 84591308 GTCTTACCTTCCCGAGCTG 60 84591212 84591230 CATGAGCATCCAAGCACAG 59 Novel Rattus norvegicus 81 AABR07071959.1 ENSRNOG00000043455 ENSRNOT00000067015 2 1 1 80 1 170900292 170900313 CTACATCATACATGTTGGCAC 57 170900355 170900373 TGGGAACATGGAGATTGAC 57 Novel Rattus norvegicus 81 AABR07071959.1 ENSRNOG00000043455 ENSRNOT00000067015 3 1 1 80 1 170900231 170900251 AGAAGTGGCTTTATCTTGGTG 58 170900291 170900312 TGCCAACATGTATGATGTAGC 59 Novel Rattus norvegicus 81 Tcap ENSRNOG00000060511 ENSRNOT00000085408 1 1 1 80 10 86337739 86337757 AGAGCTGAGCTGTCAAGTG 60 86337798 86337822 TAGACAGATGAGGTCTTTCCAC 59 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000054091 ENSRNOT00000083081 3 1 1 61 20 5153033 5153051 GTGGGTTTGGAAAGGTCTG 59 5152990 5153008 TGTGGGATGGTTGATCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 3 1 1 79 20 18046145 18046163 TGTTTGCGTCTTTCATCCG 59 18046204 18046356 CTGAGCTAGGAAGACCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061234 ENSRNOT00000082546 1 1 1 60 4 102741361 102741380 GAGGATGTGTCTCTGATCAG 57 102741320 102741341 TGTTAGGCTACTAATCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061234 ENSRNOT00000082546 2 1 1 61 4 102741361 102741381 AGAGGATGTGTCTCTGATCAG 59 102741320 102741341 TGTTAGGCTACTAATCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061234 ENSRNOT00000082546 3 1 1 62 4 102741361 102741382 AAGAGGATGTGTCTCTGATCAG 59 102741320 102741341 TGTTAGGCTACTAATCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123213.1 ENSRNOG00000048422 ENSRNOT00000074750 3 1 1 61 4 153354002 153354020 GCCTGGTCTACAGAGTGAG 59 153353959 153353978 TTTCTACACAGGGTTTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057976 ENSRNOT00000091632 1 1 1 60 3 156106689 156106710 ATACAGAGAAGATTAGCATGGC 58 156106729 156106749 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061068.2 ENSRNOG00000060654 ENSRNOT00000087659 2 1 1 80 4 103524358 103524708 TTTGGATTCCAGCTTCCAG 58 103524751 103524770 AAGCTTGATCTCCAAGTCTG 58 Novel Rattus norvegicus 81 AABR07060792.1 ENSRNOG00000057220 ENSRNOT00000090783 1 1 1 60 4 93888730 93888751 AGCTTGGAGTCTGAAGATATGG 60 93888769 93888790 TGGGAGGATACTCATTATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056270 ENSRNOT00000087440 1 1 1 60 3 134461517 134461538 AGCAATACAGAGAAGACTAGCA 59 134461478 134461496 TGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052760 ENSRNOT00000085030 2 1 1 60 20 32094679 32094701 AATATCTGATCGTCCTCTATCCG 59 32094718 32094739 AACTCCTAGTTCCAAAGATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051376 ENSRNOT00000077251 2 1 1 62 6 78223271 78223292 GCAGCACATATACTAGAATTGG 57 78223230 78223249 ACTTCATGAATTTGCGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051376 ENSRNOT00000077251 3 1 1 63 6 78223271 78223292 GCAGCACATATACTAGAATTGG 57 78223229 78223249 CACTTCATGAATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072916.1 ENSRNOG00000061523 ENSRNOT00000085319 3 1 1 60 3 112916617 112916638 TCAGGTGAATGTCGGATATCTG 60 112916578 112916600 GACTCAGATAATGTGTCTCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000058211 ENSRNOT00000090237 2 1 1 60 2 155399747 155399766 TGGGAACACTGAATCATGAG 58 155399706 155399726 CACCACCCTGTCTTACTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000058211 ENSRNOT00000090237 3 1 1 60 2 155399747 155399768 CTTGGGAACACTGAATCATGAG 59 155399708 155399728 CCACCCTGTCTTACTAGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 1 1 1 84 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673893 110678051 TCCTTCATGTTCATGGTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000053758 ENSRNOT00000078165 2 1 1 60 3 58061417 58061436 GTTGGATTAGGAGCTTGCTC 59 58061459 58061477 TTCCTGGAGGTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041764 ENSRNOT00000063517 2 1 1 60 5 76085198 76085216 GTGTGCTTGATCTCGTCTG 59 76085239 76085258 TCTAAGCATTAACCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034610.1 ENSRNOG00000056908 ENSRNOT00000090657 1 1 1 80 11 81261129 81261149 AGACTGAAGAGGCTTTCCA 58 81261192 81261213 CTAAAGCAAAGCATTCAGTGTG 59 Novel Rattus norvegicus 81 AABR07059142.1 ENSRNOG00000059626 ENSRNOT00000089919 2 1 1 169 4 4690126 4690144 GACGTAAGAGCATCGTGGT 60 4689972 4689991 ATCTTGGTGACTGAGCTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 3 1 1 64 5 124275985 124276008 CAATCGCCCAGTGAAATCG 60 124276036 124276054 GGTATCTGCCATTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA2 ENSRNOG00000060385 ENSRNOT00000079851 2 1 1 60 7 140139264 140139282 TGTTGGTTTCAAGCAGGTG 59 140139222 140139241 TTCTGAAATGGCCAACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054923 ENSRNOT00000082051 3 1 1 60 1 259193054 259193076 GATACAGAGAAGATTAGCATGGC 59 259193016 259193034 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055703 ENSRNOT00000083760 2 1 1 67 4 14815836 14815854 GGGTGTTGTGTCACATGTG 59 14815787 14815811 GAACACTGAGTTTAGACATAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017902.1 ENSRNOG00000061828 ENSRNOT00000079158 3 1 1 108 15 32487767 32487936 TCTGAACTTGGTGAGTGGTC 60 32488004 32488025 TGCTGTGTTTGTATAAGTGCAG 60 Novel Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 2 1 2 80 4 113979376 113979514 TCAAGAACAAAGGCGATCTG 59 113979554 113979575 CCATCTCAGTATCCTGAATCTG 58 Novel Rattus norvegicus 81 SCARNA3 ENSRNOG00000052856 ENSRNOT00000091639 2 1 1 60 10 74302009 74302029 GTATCTTTCGGCTGTAGAAGG 58 74301969 74301987 ACATGCTGTCAGAGACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000082773,ENSRNOT00000071700 3 2 4 81 9 81646698 81646716 ATGGAGAGGAAGATGAGCG 59 81646761 81646936 TCTTCGTTTCCTCACCCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057648 ENSRNOT00000078829 3 1 1 63 9 120318631 120318655 CAATACAGAGAAGATTATCATGGCC 60 120318674 120318694 TGGAATGCTTCCAGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053480 ENSRNOT00000083911 3 1 1 60 3 4092863 4092881 AGTGGCTATTTCTACGCTC 57 4092821 4092842 AGGCTACAAACCATTCTTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056517 ENSRNOT00000085597 3 1 1 60 10 90220266 90220286 TCATCAGACTGGTTAGACTGC 60 90220308 90220326 CTTTGTGAGGGACACTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059782 ENSRNOT00000086132 2 1 1 60 7 5659919 5659937 CAAAGAGGACAACCTTCCA 57 5659960 5659979 TACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040834 ENSRNOT00000062587 3 1 1 60 13 66920075 66920096 CTGATCTCAGAAGCTAAGTAGG 58 66920036 66920055 GTCAAGATGTCTCCCATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059188 ENSRNOT00000085047 1 1 1 60 15 71071973 71071995 CGATACAGAGAAGATTAGCATGG 59 71071935 71071953 TCCTCTTGTTCATTCGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069968.1 ENSRNOG00000056807 ENSRNOT00000073515 3 1 1 66 8 43142318 43142342 CATGTCTTACCAGATTTACAGTTCC 60 43142274 43142293 AACTGATGCACAGAACACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047693.1 ENSRNOG00000036481 ENSRNOT00000054589 3 1 1 60 5 43449226 43449247 ACCAATAGAGAAAGATGCACCT 60 43449268 43449286 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059716 ENSRNOT00000085083 2 1 1 60 5 67219856 67219876 GCTATGTCACATATGGGACAG 58 67219816 67219837 CACTGAATGGAAACATAGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.2 ENSRNOG00000053343 ENSRNOT00000085233 1 1 1 80 6 79235981 79236003 AGATTTCACCTCACATGCG 58 79236046 79236065 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056766 ENSRNOT00000077540 3 1 1 60 15 94701940 94701960 ATTGCAGCTGCTTTATCTGTG 60 94701900 94701921 AACATAGACACAACTGTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057073 ENSRNOT00000087802 2 1 1 60 13 83715694 83715712 GGACCATCAGTCTTAAGCC 58 83715652 83715671 TGAAGGTTCTAGCAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044555 ENSRNOT00000069822 3 1 1 60 15 43258155 43258173 ACCACTCTAAATGTGCCTG 58 43258113 43258132 GAACTAACCAGGTGTGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044905 ENSRNOT00000070172 1 1 1 60 3 110116757 110116775 GAATGTGCCCAATCTTGCT 59 110116798 110116817 CCAGATATTAACAAGGCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000060741 ENSRNOT00000082884 2 1 1 85 20 34992117 34992138 TGGTACTTTAAGAGGCTAACAC 58 34992184 34992202 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042874.1 ENSRNOG00000055181 ENSRNOT00000085429 1 1 1 60 19 13139774 13139795 CTAGAAGACCAAGATCAAGGTG 58 13139815 13139834 GACACATTGAAAGGCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002683.1 ENSRNOG00000054609 ENSRNOT00000078462 1 1 1 80 1 80982566 80982589 GATCTGGGACACAGCAGAG 60 80982631 80982651 TCATACACGAGTATGATGCCC 60 Novel Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 2 1 1 95 3 145831636 145831655 GACTTCCATTTGCGGAACG 60 145831714 145831732 ACAGACCATCATCCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054015 ENSRNOT00000078245 3 1 1 60 10 49170477 49170495 GAGAAGATTAGCATGGCCC 58 49170435 49170453 AAATAAGGAGCGCTTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058922.1 ENSRNOG00000056365 ENSRNOT00000086547 1 1 1 61 7 143323112 143323130 CATACTGGGCCTTGACCTC 60 143323155 143323173 CATGGACAACAACCGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060875 ENSRNOT00000087309 2 1 1 60 1 69687390 69687410 GGAACACATTCCCTAGTAGAG 57 69687431 69687450 GAGCAGCTACTCACATACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025673.1 ENSRNOG00000052847 ENSRNOT00000073762 2 1 1 80 16 45085905 45085928 GAGATTTCACCTCACATGCG 59 45085844 45085863 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044284 ENSRNOT00000069551 1 1 1 60 X 71782919 71782940 AGTACCAGATCTCATGTGATCC 59 71782880 71782899 GTCCCATTACTAACCAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047036.1 ENSRNOG00000061874 ENSRNOT00000091550 3 1 1 107 5 16464402 16464420 CACACTCAAGCACAAACAC 58 16464490 16464509 TGTATGTTTGCGTGAGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060013 ENSRNOT00000078147 1 1 1 60 19 31615850 31615869 TGTTGGTCAGACTAGAGGAG 58 31615809 31615827 ATGGAGACCAAATTGCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052543 ENSRNOT00000079016 2 1 1 76 13 49593486 49593505 CTAGAGCCATTGCAGATGTG 59 49593429 49593447 GAACAGAGTTTGGACGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068852.1 ENSRNOG00000053409 ENSRNOT00000092036 2 1 1 106 9 121991691 121991710 CTTCACTCAGGAAGAGTGGG 60 121991773 121991999 CCAAATTGTAACCTATAGCAGTGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054655 ENSRNOT00000090927 2 1 1 60 9 117907932 117907952 GAACACGTCTTAAGTCAAGGG 59 117907892 117907912 TTGTTTGAGGTTCTAGCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.7 ENSRNOG00000051183 ENSRNOT00000076632 2 1 1 60 X 73564190 73564211 ATGAACTATCTGATGATGCCTG 58 73564230 73564250 ATGTTGCACTAATCTCTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056569 ENSRNOT00000090068 1 1 1 60 13 183429 183450 ATACAGAGAAGATTAGCATGGC 58 183470 183489 GGAACGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060679 ENSRNOT00000081591 2 1 1 60 18 60285910 60285931 GAAGGAGACAGAACAAGTTAGC 59 60285871 60285892 ACTTCACAGATTGTCATGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055143 ENSRNOT00000077673 1 1 1 60 13 90650393 90650413 TTGAGTTCAAGAGTTCTGGAC 58 90650435 90650453 TGGACTTAGTGTGAACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000061509 ENSRNOT00000081675 1 1 1 60 19 12755596 12755616 AGATGTGGCTTGTTTACATCC 59 12755556 12755575 TGCTGAAGGAATCACTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041057.1 ENSRNOG00000046961 ENSRNOT00000073914 1 1 1 80 X 118131815 118131833 GCATATAGCAGGTCCTCAG 57 118131877 118131895 CTCCACATAACAGGTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036200 ENSRNOT00000054323 1 1 1 60 13 58460950 58460968 CGATCTCATCTGATCTCGG 57 58460989 58461010 TTCTCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061145 ENSRNOT00000079587 3 1 1 60 15 44254191 44254209 GTCACTGTGCATCAGTAGG 58 44254232 44254251 TCACAACACTGGGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056039 ENSRNOT00000086198 3 1 1 61 5 63650680 63650698 GGAGGTTGTGTCACATGTG 59 63650723 63650741 GTAACATGGGCATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059935 ENSRNOT00000077680 2 1 1 60 18 25084099 25084118 TGTTGATTCAGCTGAACTGG 59 25084141 25084159 CACAGATCAGTGAAGGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057386 ENSRNOT00000078924 2 1 1 62 5 170919650 170919668 TCTGGCTGTGACATCTGTC 59 170919694 170919712 TAGCCAATCGGATCAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036007.1 ENSRNOG00000053790 ENSRNOT00000081099 2 1 1 85 12 30441705 30443354 TCTTTGGACAGGAGTCCAG 59 30443474 30443492 GCCCAAATAAGTGTAGCCA 58 Novel Rattus norvegicus 81 AABR07036007.1 ENSRNOG00000053790 ENSRNOT00000081099 3 1 1 86 12 30441688 30441706 CAGATTCCGAAGGTCCCTC 60 30443381 30443476 CCAAGATAAGTACAGCATCTAAAGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000056661 ENSRNOT00000082206 3 1 1 60 3 20347754 20347774 TCACTTTGGCATCACATATGC 59 20347714 20347735 AGTAGGAGCCATGCTAATTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002119.1 ENSRNOG00000055247 ENSRNOT00000082190 3 1 1 60 1 66638064 66638084 GATTAGAAATGCGAGGTTGGA 59 66638024 66638042 GCCCATTACCACATGACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064304.1 ENSRNOG00000046049 ENSRNOT00000072488 1 1 1 80 6 74913281 74913299 GTGTGGTGTCAAACACTCC 59 74913343 74913363 CACATCTGGGATGATGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059046 ENSRNOT00000091775 2 1 1 62 15 17051127 17051150 GGAACAATACAGAGATTAGCATGG 60 17051088 17051107 GGAAGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036972.1 ENSRNOG00000045894 ENSRNOT00000071538 1 1 1 79 X 8471552 8471570 AGCTGTAAGGCATTTCCTC 58 8471491 8471509 AAGACTACCAGCCTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053440 ENSRNOT00000084604 1 1 1 60 X 96953051 96953073 AGGTATGTTAGTAGGAGGTAGAG 58 96953013 96953031 GACATCAGTGAGCTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030184.1 ENSRNOG00000057449 ENSRNOT00000077390 3 1 1 94 10 74762858 74762896 TGGTATACAGAGGTTTCAGTG 57 74762952 74762970 AAAGATCACAGACCTTGGC 58 Novel Rattus norvegicus 81 SNORA4 ENSRNOG00000059688 ENSRNOT00000084835 1 1 1 60 10 83253819 83253837 GTAAGAGCACACTCCACAG 58 83253858 83253879 GGCCACAATATAGTAATGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000054652 ENSRNOT00000091098 2 1 1 60 18 10489230 10489252 CAGCCACTATGGAAATCAATAGG 59 10489271 10489290 GCAAGGTTTCTAGGATGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061580 ENSRNOT00000088601 3 1 1 61 18 63230087 63230105 TTGCACTCCGGATGTACTG 60 63230044 63230065 TTAAGTAGTCGAGCTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068274.1 ENSRNOG00000053030 ENSRNOT00000081131 3 1 1 70 9 94634014 94634032 AAATGCAGGTACCAAACCC 58 94633962 94633980 GTGTGCTCTGGGAAGTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057838 ENSRNOT00000082643 2 1 1 60 5 162797881 162797899 TTATCCATTGCACTCCGGA 59 162797922 162797941 GTCGAGTTTCCCGAATTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.1 ENSRNOG00000052226 ENSRNOT00000081761 2 1 1 89 X 123803252 123805426 TACTATGTGTCCAAGGGCC 59 123803181 123803200 GGAACAGATGACCATAGCTG 58 Novel InUTR Rattus norvegicus 81 SNORA36 ENSRNOG00000058062 ENSRNOT00000090209 3 1 1 61 3 138472726 138472745 CTTGGTTCAGAGCAACTTCC 59 138472768 138472787 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036732.1 ENSRNOG00000057227 ENSRNOT00000090671 3 1 1 83 X 1062008 1062026 TTGAAGTTGGAGCAAGGAG 58 1036509 1061962 AATCCTAAACTTCCCACCTG 57 Novel Rattus norvegicus 81 AABR07041532.1 ENSRNOG00000049651 ENSRNOT00000072582 1 1 1 60 X 132506946 132506964 CCTCTTCCTCTTCCTCCTC 58 132506904 132506924 CCTTCCCTTCAGAATTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054963.1 ENSRNOG00000061850 ENSRNOT00000077751 3 1 1 60 3 175779554 175779572 GAAGCCAAATGCTTTGCTG 59 175779596 175779614 CAAATCCATCCAACAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051786 ENSRNOT00000083260 1 1 1 60 4 17801324 17801345 TATATGAGTAGCTGCGTTCTCC 60 17801365 17801384 CTACAATGGACCATCAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032057.1 ENSRNOG00000061300 ENSRNOT00000091133 2 1 1 74 18 44909130 44909148 TGTTATTGAGCACGGTGTG 59 44909074 44909092 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051509 ENSRNOT00000085425 1 1 1 60 X 137025262 137025283 AGGTATGTTCCTCCTGAAACTG 60 137025301 137025322 TGGTCTATTCTGGAAGGTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034905 ENSRNOT00000053028 3 1 1 60 18 78818874 78818892 CGATCTCGTCTGATCTCGG 60 78818914 78818934 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000056593 ENSRNOT00000087950 2 1 1 60 X 95831805 95831823 GAGTACCCGAAACCATGAG 58 95831847 95831865 TAGAGGCAGCTTCACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055040 ENSRNOT00000082941 3 1 1 61 4 104836179 104836197 GGATCAGTAGGTGGCAGAG 59 104836219 104836240 ATTCACAGGTTAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055048 ENSRNOT00000091582 2 1 1 76 6 104272175 104272198 GCTAAGTTCAGTGACACATATAGG 59 104272122 104272142 CATATCATCCATGCACAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052048 ENSRNOT00000085173 2 1 1 60 15 101593042 101593062 GTACAGAGTAGATTAGCACGG 58 101593002 101593021 GGAATGCTTCACGAATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056700 ENSRNOT00000085942 1 1 1 60 15 1722757 1722775 GAGAAGATTAGCATGGCCC 58 1722799 1722817 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060971.1 ENSRNOG00000054428 ENSRNOT00000077412 2 1 1 80 4 102068589 102068973 TGGATCCAGGAAACCAGAG 59 102069016 102069035 GGAGACTGATTGTCCAATGG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000060702 ENSRNOT00000080765 2 1 1 63 7 118580800 118580821 CAGAGAAGGTACTATGATCGTG 58 118580758 118580776 TACAGGGATCAGCACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000058198 ENSRNOT00000079026 3 1 1 60 6 43450573 43450592 CTGATCTCGTCTGATCTTGG 58 43450532 43450554 CTCCCATCCAAGTACTAACTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000059127 ENSRNOT00000086157 3 1 1 60 20 8817267 8817285 AGTGTCCAGAACTGGTCAG 59 8817225 8817247 GTCACCACTGTAACTTAATCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054908 ENSRNOT00000088382 2 1 1 60 6 2876444 2876466 TGTGCTCTATCCATAAGGATGAC 60 2876406 2876424 GGCCACTTGACTGAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115418.1 ENSRNOG00000043746 ENSRNOT00000069013 3 1 1 61 15 4295140 4295160 GGGTAGGCTTTGAGATTTCAG 59 4295183 4295201 GCAGCAGGAAGAAAGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052476 ENSRNOT00000089337 3 1 1 67 5 99476610 99476628 TAGGTGTGGCTACTCTGTC 58 99476561 99476580 AACAGTAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052060 ENSRNOT00000078488 2 1 1 60 5 70827953 70827971 GTGCTTCCGTAGGTGAGAG 60 70827991 70828013 GAAGAGTAAGTGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056074 ENSRNOT00000077524 2 1 1 60 20 17843332 17843350 GTCAGTAGATGGCAGAGGG 59 17843290 17843309 CATTCATAGGTCAGAACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059527.1 ENSRNOG00000060833 ENSRNOT00000082968 1 1 1 123 4 22986946 22986965 TTGACTCTGTTACAGAGGGA 58 22987054 22987075 GGTATTTAGGCACTGAAACCT 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000060800 ENSRNOT00000080371 2 1 1 60 4 51105318 51105338 AGGGTTGATTCATAGGATCTG 57 51105278 51105296 TGGAGTGTTGAAGGAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060800 ENSRNOT00000080371 3 1 1 60 4 51105317 51105338 AGGGTTGATTCATAGGATCTGG 60 51105278 51105296 TGGAGTGTTGAAGGAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 1 1 1 60 8 53903673 53903691 GGAGTCAAGCTGAAGAGCT 59 53903710 53903735 TCTCTTGTCCATAGATAGATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA73 ENSRNOG00000059267 ENSRNOT00000082651 2 1 1 60 6 95456389 95456413 CTTGCATATTCCTATGACTTCTCAG 60 95456353 95456371 CCATGGTTTGTCTCCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054209 ENSRNOT00000090850 2 1 1 60 5 150526095 150526113 TCGCCTGCATATTCCTACG 60 150526053 150526072 AGGTTTGTCTCCTCAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054209 ENSRNOT00000090850 3 1 1 60 5 150526082 150526105 ATATTCCTACGACTTCTCAGAGTC 59 150526045 150526063 TTTCCTGCAGGTTTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049202 ENSRNOT00000073244 3 1 1 61 7 115470680 115470699 TCTACAGCGATACCACACTG 59 115470638 115470657 AGCTCTGTTTAGCTTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044303 ENSRNOT00000069570 2 1 1 60 20 50281039 50281058 CCGGTCTTGTAGGATCTCTG 59 50280998 50281016 CGCCCATCCAAATACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055415 ENSRNOT00000085192 2 1 1 60 20 10593493 10593517 GAAGTTAGAACGATACAGAGATCAC 59 10593457 10593476 CTTGAATTTGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000060911 ENSRNOT00000081942 2 1 1 61 19 43399786 43399807 GTGTCTCTTCTCTGACATTCTC 58 43399829 43399847 CAGCCTCATCAGATCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058368 ENSRNOT00000078564 1 1 1 68 20 45947774 45947792 ACCTGTGCATCTATGGGTG 60 45947824 45947842 ATGTTCACAGGTCAGAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045387 ENSRNOT00000070654 1 1 1 60 20 7231374 7231396 CACGTGATCTCATATGATCTCAG 59 7231336 7231354 CCCTCCAAGTATGAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055086 ENSRNOT00000088129 3 1 1 60 5 18803927 18803945 CTAGGTGGCAGATAGAGGC 59 18803885 18803903 TCATTCAGTTGTTCGCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060980.1 ENSRNOG00000056052 ENSRNOT00000083239 1 1 1 80 4 102147231 102147252 GACATAGTATGGCCATGAAGAC 59 102147291 102147431 GAATATCACATCTGGCACCTG 59 Novel InUTR Rattus norvegicus 81 AABR07050160.1 ENSRNOG00000041443 ENSRNOT00000063196 3 1 1 60 5 153861514 153861532 ATTAGGCTCACAAACGACG 58 153861472 153861490 CCCAAATACTTCCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054193 ENSRNOT00000078385 2 1 1 60 7 124020913 124020933 AGTCCTCACTGCTTATGTGAG 60 124020955 124020973 GTCGCCTTAGATAGCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052458 ENSRNOT00000088240 1 1 1 63 11 72756789 72756807 TTGAGTTCAGTTCAGGGCA 59 72756744 72756762 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056025 ENSRNOT00000079278 1 1 1 60 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146662 65146681 TCAGAACACTGAGCGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060717 ENSRNOT00000085490 1 1 1 64 18 43591335 43591357 GGGACATACCATAATCAAGAAGG 59 43591293 43591311 ATATCCAGTGTGCAGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000056676 ENSRNOT00000088693 2 1 1 60 18 10922308 10922330 CAGCCACTATGGAAATCAATAGG 59 10922349 10922368 GCAAGGTTTCTAGGATGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Vault ENSRNOG00000052373 ENSRNOT00000090410 3 1 1 62 18 29647887 29647905 GCTATGTAACGTGGTCGGT 60 29647930 29647949 CCAACCACTCACCAGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061323 ENSRNOT00000084037 1 1 1 60 9 64111883 64111901 CGTATGCATCAGTAGGTGG 58 64111841 64111860 TCATGGGTCAGAACACTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000051891 ENSRNOT00000088408 3 1 1 66 17 43770521 43770539 GTAAGGGCCTGGGTAAAGG 60 43770473 43770491 ATGCCCTGGATGTTGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.1 ENSRNOG00000046131 ENSRNOT00000074084 3 1 1 61 11 36576774 36576793 TTGAACCTCAGAGATCCACC 59 36576817 36576835 GTGGTGCTTGCCTTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059336 ENSRNOT00000091303 1 1 1 60 7 141967402 141967424 GATACAGAGAAGAATAGCATGGC 59 141967364 141967382 GAACACTGCACGAATCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061325 ENSRNOT00000091256 2 1 1 60 19 43611873 43611891 GGTGTGGCTTCTGTATCGT 60 43611914 43611933 GAGACCTAGCCTTTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061098 ENSRNOT00000086292 1 1 1 80 5 149367960 149367978 TAGAGGCACTGCAGATGTG 60 149368021 149368040 CTGAGCATAGACATCGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061915 ENSRNOT00000088883 2 1 1 60 18 7406971 7406989 AGAGTGGTCTGGCTTTGAG 59 7407011 7407031 AGATCAACCAAGTCAATCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000055168 ENSRNOT00000077371 2 1 1 115 3 23279579 23279597 TATAGGCATGGCACTAGGA 57 23279482 23279502 TTGACCCTGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.5 ENSRNOG00000053719 ENSRNOT00000086423 3 1 1 106 6 139013262 139102344 CATTTCCAAGCTGTGTCCT 58 139013174 139013192 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060748 ENSRNOT00000091291 3 1 1 66 5 68794323 68794342 TGCATCAGAAGGTGGTAGAG 59 68794276 68794294 AGATGTTCACAGGTCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044715 ENSRNOT00000069982 2 1 1 60 18 64976410 64976430 GCATGTACCTGATTCTGTCTG 59 64976370 64976388 TAAGAACTAACCAGGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057255 ENSRNOT00000083040 1 1 1 60 18 7640866 7640888 TGTCAAGGGTCTAAGAGTAACTG 60 7640828 7640847 GTCTTCAGAGCTTGTTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064011.1 ENSRNOG00000047769 ENSRNOT00000071847 3 1 1 148 6 60151456 60151474 ACGCCTTAAGTAGCCAGAC 60 60151587 60151605 AGAGCAGACTGAAGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000056879 ENSRNOT00000079344 1 1 1 60 20 11934173 11934191 AGAGACTTTGACAGCCCAG 59 11934131 11934151 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053958 ENSRNOT00000082219 2 1 1 60 20 17226805 17226825 TCACATATCGTCAGTAGGTGG 59 17226765 17226785 ATTAGCACCTTGAGCATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036453 ENSRNOT00000054564 2 1 1 60 4 153099314 153099333 AGAAGCTAAGCAGAGTTGGG 60 153099356 153099374 CCAGTATTCCCAGGCAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061161 ENSRNOT00000083077 3 1 1 60 9 57503497 57503515 AGTTGGAACATGAGCTTGC 59 57503455 57503475 GAGGAACTGCAATACCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058280.1 ENSRNOG00000056425 ENSRNOT00000081130 1 1 1 69 7 108383879 108383897 GAGATCCAGCTGTAAGGCA 59 108383828 108383846 ACAGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051453 ENSRNOT00000086025 3 1 1 61 11 23264327 23264346 AATGAGGTTTATCCAAGGCG 58 23264370 23264388 TAGCTCTCGGGATGTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061081 ENSRNOT00000086788 2 1 1 60 4 91233161 91233181 CTAGGAGTTGGAATAGGAGCT 59 91233121 91233139 TTTCTGCAATACCAGGTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045014 ENSRNOT00000070281 3 1 1 60 9 67192643 67192663 CTGATCTTGTTCTGTGTTGGA 58 67192684 67192703 GCTTCCTCCCATTCATAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059076 ENSRNOT00000082832 3 1 1 60 11 56015596 56015615 ATCACCAGGGTTAGTTCAGC 60 56015636 56015656 GATGAGTGAAGAAGGGAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055521 ENSRNOT00000052795 2 1 1 60 9 112906011 112906029 CGATCTCGTCTGATCTCGG 60 112905969 112905989 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059813 ENSRNOT00000085313 2 1 1 60 4 53658736 53658757 GATACTGTGAGCAGAGAAATGG 59 53658697 53658718 ACATCTCACATGCAATAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047799.1 ENSRNOG00000058066 ENSRNOT00000091281 3 1 1 62 5 48410506 48410524 TGATGTCCAAGGTCAAGGT 59 48410550 48410568 GAAAGACAGCAAGACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052779 ENSRNOT00000088015 2 1 1 60 11 1470638 1470659 GAACGAAACAGAGAAGATAAGC 58 1470679 1470698 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000057459 ENSRNOT00000082764 2 1 1 61 6 80224781 80224801 TAAGAGGCTAACACAGAAGGG 59 80224824 80224842 GAGTGGAGCCTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095267.4 ENSRNOG00000061511 ENSRNOT00000088637 1 1 1 81 X 156153952 156154149 GTATCTTAGCTGTTAGGTGGAC 58 156153892 156153910 AGGGAGAGTTGATCAAGGA 57 Novel Rattus norvegicus 81 AABR07043601.2 ENSRNOG00000046017 ENSRNOT00000073849 2 1 1 88 19 30646583 30646601 CCCAGATGACTAAGGATGC 57 30646652 30646671 ACTACTGCATTATGCAAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057394 ENSRNOT00000081366 3 1 1 60 19 62085976 62085997 GACTGCTGCATTAGTAACTAGC 59 62086018 62086036 GTCAGAACACTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053125 ENSRNOT00000078259 1 1 1 60 11 67421934 67421953 TACAGGGATTGCCATGATCC 60 67421975 67421994 ACATGGAATGTTTCATGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA18 ENSRNOG00000051481 ENSRNOT00000090549 2 1 1 63 18 70733271 70733289 CTGCCGATGATGACATGAC 59 70733226 70733244 CAGCACAATCCATCACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053625 ENSRNOT00000088617 2 1 1 86 11 25084272 25084290 GCTTCAGCAGCACATATCC 59 25084340 25084358 TCTCATGAACTCGCCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000057748 ENSRNOT00000084952 1 1 1 60 11 47095109 47095129 TTTGACTACCACACTTTCTCC 58 47095069 47095089 CCTTCATCTATCCCATAAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000057748 ENSRNOT00000084952 3 1 1 60 11 47095116 47095136 TTTCCCATTTGACTACCACAC 59 47095076 47095096 CTATCCCATAAGCATAGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053839 ENSRNOT00000084683 1 1 1 60 6 133821527 133821545 GGACCGGTGATGAGATCTG 60 133821569 133821587 ATCTGGATACTTGGCGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063901.1 ENSRNOG00000004108 ENSRNOT00000005458 3 1 1 60 6 55085573 55085593 CATGGGTAGAGTCATACTGGA 59 55085613 55085633 AATGACTCCTTCATTGACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052008 ENSRNOT00000082632 1 1 1 60 11 39194602 39194620 ATGGACACTTTGAACGCAC 59 39194644 39194662 CTCCCAGAAAGGTGTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068417.2 ENSRNOG00000048666 ENSRNOT00000072142 3 1 1 60 9 104325113 104325131 AACTCACCCTGTAGACCAG 58 104325155 104325173 TTGGGAGGTAGAGACAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049379 ENSRNOT00000073838 3 1 1 76 11 5785879 5785898 TCTTACTGTGTTACGCCCTG 60 5785822 5785840 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024716.1 ENSRNOG00000057312 ENSRNOT00000077763 2 1 1 88 16 12510996 12511146 CAGACAAGGATGAGAATGATTCTG 60 12511192 12511211 TAGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 AABR07065844.1 ENSRNOG00000056665 ENSRNOT00000081569 1 1 1 82 6 143230011 143230030 TGCAAGACTTCTGGTTTCAC 59 143229013 143229967 CACTCAACGCTCAATGTCTG 60 Novel Rattus norvegicus 81 AABR07065886.1 ENSRNOG00000004262 ENSRNOT00000005634 1 1 1 60 6 143661402 143661423 CGTTGATTACTCACAGTTTCAG 58 143661441 143661462 TGAATCTCTTCCATAATCTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065886.1 ENSRNOG00000004262 ENSRNOT00000005634 3 1 1 60 6 143661403 143661424 GTTGATTACTCACAGTTTCAGG 57 143661441 143661463 CTGAATCTCTTCCATAATCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000056151 ENSRNOT00000080165 3 1 1 80 2 21592682 21592701 GAGGAAAGCTTCATTTGCTC 58 21592229 21592350 TCCTATCCTGATGCTCCTG 58 Novel Rattus norvegicus 81 AABR07051715.1 ENSRNOG00000047541 ENSRNOT00000072214 2 1 1 85 3 19961701 19961721 TCAGCCTTGATCAAGCCTC 60 19961769 19961788 CAGGTACCAATGCAAATGGG 60 Novel Rattus norvegicus 81 AABR07027811.5 ENSRNOG00000055437 ENSRNOT00000084298 1 1 1 94 17 44738995 44739013 TAGCTCTCCGTCTTCTTGG 59 44738919 44738937 GAGCTCAACAAACTGCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055497 ENSRNOT00000080369 1 1 1 60 7 126242459 126242477 ATCCACTGCATACACTGAC 57 126242417 126242435 GTGGATTCCCACTTCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060183 ENSRNOT00000077780 3 1 1 60 7 53616613 53616635 ATACCACAACTGGAAGGATAGAG 60 53616575 53616594 TGTATGCTATCCTTGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063424.1 ENSRNOG00000060896 ENSRNOT00000082885 3 1 1 61 6 30639057 30639075 AGAGGGTGTAAATCTCGCG 60 30639100 30639118 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044338 ENSRNOT00000069605 3 1 1 71 7 32471384 32471402 CATACCACCGTGAATGCAC 59 32471331 32471349 CAGTCAGGTACCAGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050006.1 ENSRNOG00000058676 ENSRNOT00000084118 3 1 1 88 5 148066136 148066154 AGTTCAAAGGGATCAGCTG 57 148066205 148066225 GTGAGCTATACGGATGAGAG 57 Novel Rattus norvegicus 81 AABR07056664.1 ENSRNOG00000041366 ENSRNOT00000063119 1 1 1 60 7 35249844 35249865 TCAGAGGCTTATAGATCCAAGC 60 35249886 35249904 AGCTTCTGAAGCCTTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013931.1 ENSRNOG00000051869 ENSRNOT00000079568 3 1 1 60 2 264153599 264153617 GATGAAGAGGAGGAAGGGT 58 264153557 264153575 CTTCACCTTCATCCTCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058346 ENSRNOT00000082093 3 1 1 60 17 50959709 50959728 GGATATCTCCTTCCTCCCTC 58 50959668 50959688 AACAGAACATGCAACTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063287.1 ENSRNOG00000047968 ENSRNOT00000075505 2 1 1 61 6 27107005 27107025 TGAGTAGAAGACACCACATCC 59 27106964 27106982 CGGAGACCACCTAAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048228.1 ENSRNOG00000054196 ENSRNOT00000091795 1 1 1 80 5 68209075 68209097 AGATTTCACCTCACATGCG 58 68209013 68209032 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060314 ENSRNOT00000092140 2 1 1 60 9 58970473 58970495 AAAGAGACAGGACTACTCTTCAG 59 58970514 58970533 GTTTCAGCAAAGGCTTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057268 ENSRNOT00000088953 2 1 1 61 17 43017112 43017131 TGTCGCTGCTATGTAATGTG 59 43017154 43017173 TGTTCACAGGACAACCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061512 ENSRNOT00000087343 3 1 1 60 9 57022015 57022034 GAGGCTATGTCAAAGCTCAG 59 57022054 57022075 GTAAACCTTCAGACATTCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001905.1 ENSRNOG00000057250 ENSRNOT00000090287 3 1 1 80 1 61787021 61787911 TCTTTGTAGAGAACCATCGCA 60 61787951 61787971 CATGCTGATGGACAATATGCT 59 Novel Rattus norvegicus 81 AABR07063703.1 ENSRNOG00000046279 ENSRNOT00000075437 1 1 1 60 6 42778259 42778278 AAGAAGGGTACATCGAACGG 60 42778300 42778319 ATTTCAAACTGCCTGTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000048017 ENSRNOT00000036375 3 1 1 81 7 18793032 18793249 GGATTTCAGACTCCAAAGGG 58 18792970 18792990 AGACTGATTCTTTCTCCTGGA 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052727 ENSRNOT00000078045 3 1 1 60 4 2660569 2660588 AAAGCTGTTGATTAGTGGGA 57 2660610 2660629 GATCAAAGACTGGTTCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU83B ENSRNOG00000058269 ENSRNOT00000091042 3 1 1 60 7 121298056 121298075 GTTCTGTGATGAGACTCTGG 58 121298015 121298033 GGTTCCTCAGTCTCACTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061530.1 ENSRNOG00000043588 ENSRNOT00000068855 2 1 1 61 4 131919686 131919704 ATGTCTTCTGAGCAGACCC 59 131919643 131919661 TACAAACACGGGCTTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098022.1 ENSRNOG00000048170 ENSRNOT00000074095 2 1 1 90 7 20075981 20075999 AGAGGAAAGATGGAGCTGC 60 20076082 20076101 GATGCTTTATCCTTTCCCGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA61 ENSRNOG00000055698 ENSRNOT00000088463 1 1 1 60 4 119866398 119866417 GAGGTTTCCCATTGGATCTC 58 119866357 119866375 TGATATGCCCTCCCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060043 ENSRNOT00000083141 1 1 1 60 8 130537181 130537202 GTGCTTAGTCAAGAGGATAACC 59 130537142 130537161 ATATCCTTGACCGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910814 ENSRNOG00000030477 ENSRNOT00000042020 3 1 1 211 10 87788837 87788855 CCAGGTGCTGTATCTCCAG 60 87789030 87789048 GGAGCAGCTAGATCCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.3 ENSRNOG00000060827 ENSRNOT00000091340 2 1 1 112 5 59090033 59090051 GATGTGTCCTTTGGTCTCC 58 59090124 59090146 GAAATGGTCTAGCATGAAAGGA 59 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672,ENSRNOT00000079157 3 2 2 82 16 33375066 33375086 CTCCTCATGGTACTTTCTCCA 59 33375126 33375150 GCATGGGATTATCTTTCTGTACC 59 Novel Rattus norvegicus 81 AABR07025787.1 ENSRNOG00000059962 ENSRNOT00000089505 2 1 1 89 16 50502267 50502285 CTTCTGCAGCTGAAACTCG 59 50502338 50502357 CAGTAAGCTTGCAGTGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC117096.1 ENSRNOG00000057089 ENSRNOT00000089714 3 1 1 81 2 264755951 264755971 GCACAAATTGTCCACAAACAC 60 264753431 264755911 CCAAAGGTCTCTGGAAATATGC 60 Novel Rattus norvegicus 81 AABR07042936.2 ENSRNOG00000057497 ENSRNOT00000079391 2 1 1 81 19 14943243 14945152 GCTCAACAACGTAATGAAGTC 58 14943182 14943203 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 AABR07012587.1 ENSRNOG00000002223 ENSRNOT00000003022 2 1 1 60 2 198591467 198591485 AATGGCTCTGACAGTTGGT 59 198591425 198591445 GAATGCAGCCATAGCTAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055263 ENSRNOT00000086325 3 1 1 60 8 76954028 76954049 GAATGATACAGAGAAGATCGGC 59 76954068 76954088 CGCTTCATGAATTTGAGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 3 1 1 63 1 136075099 136075117 CACCTAGACTTGGTGTGGT 59 136075142 136075163 TAATTTAGGCAGAAGGTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07040855.1 ENSRNOG00000051669 ENSRNOT00000086698 2 1 1 60 X 112311259 112311277 TAGCCTGTGATGAGGAGAG 58 112311300 112311319 ATACTTGCTCCTTGGGTCAC 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07054167.1 ENSRNOG00000058400 ENSRNOT00000088666 3 1 1 80 3 143645290 143646072 CCTATTACATAAAGCGGACTCC 59 143645231 143645250 ATAGGAGCTTCCTGCATCTG 59 Novel Rattus norvegicus 81 AABR07067491.1 ENSRNOG00000047654 ENSRNOT00000075738 3 1 1 137 9 49024275 49024293 CCAATCAACAAACGCTCCC 60 49024395 49024413 CATGTTGTGATGGAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042397.1 ENSRNOG00000056855 ENSRNOT00000085224 2 1 1 60 X 154916677 154916695 AGCTTCTCTGACTACCCTC 58 154916635 154916653 CAACTGTCTGCCTCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045084 ENSRNOT00000070351 2 1 1 61 3 60364182 60364200 CTTGTCCATCTCGGAAGCT 60 60364222 60364243 GAACTTCATTTCCATCCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054460.1 ENSRNOG00000048284 ENSRNOT00000072710 2 1 1 60 3 154868924 154868942 TGTGTAATCTTGGCTGTCC 58 154868882 154868901 ATCTTTGAGTTAGAGGCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057333.1 ENSRNOG00000061578 ENSRNOT00000058504 1 1 1 80 7 65800165 65800187 ATCTGGAATAACAAACCCAGG 58 65800227 65800247 GAGTTCAGGGATAGTGATTCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059684 ENSRNOT00000091118 1 1 1 60 13 22242725 22242744 GGTAGCAGAAAGGAAAGAGG 58 22242684 22242702 ATTCAGGTGTTCACAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052517 ENSRNOT00000081691 1 1 1 79 13 45222041 45222059 TCTTCATGGGAACCTGGTG 59 45222102 45222120 AACTCATAAGGGCAGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038019.1 ENSRNOG00000004319 ENSRNOT00000005702 3 1 1 60 X 37261826 37261845 TGAGCCTATCCCTTTCTCTG 59 37261864 37261886 ACTATAGGCATAAGCAGCTATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036638.1 ENSRNOG00000056163 ENSRNOT00000079153 3 1 1 60 12 51273320 51273341 GTCCTTGACCTAATCTCAAGAG 58 51273279 51273301 CAGACCTAGCTGATAAGAAACAG 59 Novel DesignNoJunction Rattus norvegicus 81 uc_338 ENSRNOG00000054454 ENSRNOT00000081205 1 1 1 100 8 75425217 75425235 CTCTGTATATCCGCAGGGC 60 75425298 75425317 TACCACCTCTAGAGTGGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029931.1 ENSRNOG00000058040 ENSRNOT00000090113 2 1 1 86 10 60455157 60455176 AACCTGCTAATTGTTGTCCT 58 60455220 60455245 GAGATCAGAGAAGGACATATTGAG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041670 ENSRNOT00000063423 2 1 1 60 8 119868190 119868210 CACATCTCCACTGATCTTGGA 60 119868150 119868169 CTCTCATCCAAGGTCTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060720 ENSRNOT00000086743 2 1 1 60 8 64477631 64477650 GTCATAGGAGACAGGGAAGC 60 64477669 64477691 CATTCCTAAACTCAATGCCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052370 ENSRNOT00000078251 1 1 1 60 8 46591305 46591324 CAGTAGGTGGCAGAGATGAG 60 46591264 46591284 AATGTTCACAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071208.2 ENSRNOG00000060605 ENSRNOT00000085081 3 1 1 103 8 104655736 104655755 CCAAATACAACCTCAGAGGG 58 104655647 104655669 ACAAGAAGCCTGATCACCA 59 Novel Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 2 1 1 67 8 126975981 126976789 TAAGTTCAGCTCGCAGAGG 60 126976819 126976838 GAAGTCTCCCTGGGTAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC126581.1 ENSRNOG00000058291 ENSRNOT00000090642 2 1 1 106 1 220072056 220072074 GAGCCCAAGATGTCAAAGG 59 220072144 220072332 AGCCTAAGACCCTTGACTG 59 Novel Rattus norvegicus 81 SNORA55 ENSRNOG00000060932 ENSRNOT00000083013 1 1 1 60 8 13778717 13778736 AGAGCAGAGGAAATCCAGAC 59 13778758 13778777 GGAGTTATAGAGACAGGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046358 ENSRNOT00000073866 3 1 1 61 8 130370052 130370073 CCTAAATGTGCTTGATTTCCTC 58 130370012 130370033 AATATTTACCAGGCCTGATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070851.1 ENSRNOG00000052238 ENSRNOT00000077273 2 1 1 60 8 87443908 87443926 TTAGGGTCATCGCTTCTCG 59 87443946 87443968 CTCACTGACCCTAATCTTTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052126 ENSRNOT00000088994 2 1 1 60 8 83860138 83860158 GTCACATGGACATCAATAGGT 58 83860098 83860119 GTCAGAATGCTAAGCATAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053784 ENSRNOT00000085085 2 1 1 60 8 89757425 89757443 TCACATCCGAGTCAGTAGG 58 89757466 89757485 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132740.1 ENSRNOG00000054780 ENSRNOT00000084038 1 1 1 60 8 77978701 77978721 ACTATGAAGGCCAGAAGATCC 59 77978661 77978681 GGCATTTGTGTTCTCTTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044520.1 ENSRNOG00000060173 ENSRNOT00000088409 3 1 1 60 20 9173249 9173267 TGCTATGTCGTTGGATGCT 60 9173290 9173309 TCGTGGCCCTTCTTTATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068975.1 ENSRNOG00000053294 ENSRNOT00000071404 3 1 1 60 8 4118102 4118122 AACCATTACAGAGTTCTGCAC 59 4118144 4118162 ATACCTGGTACCTGCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.2 ENSRNOG00000053090 ENSRNOT00000083479 1 1 1 77 16 26592241 26592259 CTTCTTCCAGAACCCAGGG 60 26592182 26592201 TCTAGGTCCTTCCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060214 ENSRNOT00000090465 1 1 1 60 3 111075493 111075517 GCATATACTATCACTGGAAAGACAC 60 111075532 111075553 TGTATGTCATTCTTTCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051919 ENSRNOT00000078450 1 1 1 60 3 98881988 98882008 CACGTGTGAATCAGTAGATGG 59 98881948 98881972 ATAGATAAGAACACTGAGGGAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.2 ENSRNOG00000056033 ENSRNOT00000085199 2 1 1 80 3 76007997 76008020 GAGATTTCACCTCACATGCG 59 76007936 76007955 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058974 ENSRNOT00000083339 2 1 1 60 3 106780777 106780796 ATGTGACAGGAAAGAGACAG 57 106780818 106780837 TTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056926 ENSRNOT00000087681 1 1 1 60 3 146718691 146718712 GAGAAGATTAACATGGGCTCTG 59 146718652 146718670 TTTATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051908 ENSRNOT00000092109 3 1 1 60 3 146825749 146825770 GATGGGCTATGTCTATGTTGAG 59 146825710 146825729 TCAGGCTACTGATTGTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031168.1 ENSRNOG00000055612 ENSRNOT00000085903 1 1 1 80 18 3015965 3015985 ACTCGAGATTTCTGTTTCCCA 60 2900539 3015923 TTTCCATTGCTCAGCAGTG 59 Novel Rattus norvegicus 81 AABR07031234.1 ENSRNOG00000054469 ENSRNOT00000091733 3 1 1 81 18 5024843 5024862 TTTGTCCTGTTCAACGTTCC 59 5022454 5024799 ACTCGGGTACCCAAATCTG 59 Novel Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 3 1 1 91 18 7335067 7335085 CCCTGCTCTTGATGATGGA 59 7335137 7343946 TTCTAAACACTCATGGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062664.1 ENSRNOG00000056230 ENSRNOT00000088290 2 1 1 100 6 2399610 2399940 ATACCTCAGGCTTCACACG 60 2400004 2400022 TGGAGCCTTTGAGAAGTGG 60 Novel Rattus norvegicus 81 AABR07062769.1 ENSRNOG00000054134 ENSRNOT00000087647 3 1 1 107 6 7180809 7182069 ATTGGAAGCTTTCATCTGGA 57 7180721 7180740 AAATCTTGTATCCTGGGCTG 58 Novel Rattus norvegicus 81 AABR07015358.1 ENSRNOG00000058705 ENSRNOT00000089606 3 1 1 94 14 53046362 53046381 ACTGCCACGTGTTAATTAGC 59 53046438 53049436 AAGTCTCTGCCTTGAGGTC 59 Novel Rattus norvegicus 81 AABR07047054.1 ENSRNOG00000054679 ENSRNOT00000081873 1 1 1 80 5 17577763 17577783 CTACTAGTCCAGACGTCACTG 59 17560719 17577721 CTGGCTCCTTCCATATGGG 60 Novel Rattus norvegicus 81 AABR07015517.2 ENSRNOG00000058688 ENSRNOT00000078204 3 1 1 61 14 61116720 61116738 AAGCCTGCCAAATCCTAGG 60 61122447 61122465 AATTAGGCCTTCTCCACGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047174.3 ENSRNOG00000058791 ENSRNOT00000090341 1 1 1 96 5 22247645 22253452 GGAGTTTCAGATCCTCCTCTC 59 22253510 22253528 AATTCCCTGAGGTCCTCCT 60 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 2 1 1 90 1 12403209 12409367 GAGACTTCGGTGATCAGAC 57 12409418 12409439 CTTACTCTTGCATAGTTCACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047213.1 ENSRNOG00000055469 ENSRNOT00000079997 2 1 1 72 5 24280098 24280116 CTAACTTGTCTGCGAGCAG 59 24275451 24275472 CAATCACCCATTGAAGTAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030085.1 ENSRNOG00000053262 ENSRNOT00000088849 2 1 1 61 10 66582269 66582287 TTGAGGGAGCTGCTTTCTC 60 66582777 66582795 GTCTTCTGTGTTGCAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015784.1 ENSRNOG00000055215 ENSRNOT00000081644 2 1 1 99 14 76273082 76274054 AGAATACTGCAGGATCCTGG 59 76274116 76274134 TGCTGTCTCTGTCGATGTG 60 Novel Rattus norvegicus 81 AC108312.2 ENSRNOG00000061022 ENSRNOT00000082693 1 1 1 80 14 80468244 80474176 CTGTCTCCACAGGTTTCCA 59 80468182 80468205 TATCTGACTAATCCAAGTTCCCTC 60 Novel Rattus norvegicus 81 AABR07061261.3 ENSRNOG00000060801 ENSRNOT00000081492 1 1 1 121 4 112648994 112649012 ACTACCTCCTACTCCTCCT 58 112651390 112651408 GGCCAGTCTATGTAATGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07048046.1 ENSRNOG00000060050 ENSRNOT00000078601 2 1 1 62 5 58717987 58718005 AGGTGCGTTAAGATGGAGG 60 58718031 58721873 TCAGAGAAACACCACCGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 1 2 2 117 10 88568176 88568195 CAACATCCAGCTGAACTCTG 59 88567743 88568096 TATGGAATACCCTGGCCCT 60 Novel Rattus norvegicus 81 AABR07071851.2 ENSRNOG00000053999 ENSRNOT00000078878 1 1 1 80 1 21405971 21434788 GGTGGATCTTTATAAAGGCAGG 59 21405912 21405932 GTGAGTTAACCCTTTCTGGAC 59 Novel Rattus norvegicus 81 AABR07048342.1 ENSRNOG00000051572 ENSRNOT00000083131 2 1 1 92 5 73803845 73805013 TAGAACTCTGGCAGGAAAGC 60 73803772 73803790 TCTAGGGAAGAGCTCACCT 59 Novel Rattus norvegicus 81 AABR07061385.1 ENSRNOG00000055513 ENSRNOT00000092084 1 1 1 80 4 121085024 121088289 ACCTTTCTACATCAGTGACC 57 121088332 121088350 GAGGATGCCTTCCTTAGTG 57 Novel Rattus norvegicus 81 AC229945.2 ENSRNOG00000057584 ENSRNOT00000079104 3 1 1 109 5 79922577 79922595 GTCTGACCTCATCTCCACC 59 79922668 79955164 TTTGTTCCAGGACCTCCTG 59 Novel Rattus norvegicus 81 AABR07061453.2 ENSRNOG00000057351 ENSRNOT00000084886 2 1 1 85 4 125583806 125634756 ACCACAAGAATGAGAACAGG 58 125634804 125634822 TTTCAAGTCTGCATCACGG 59 Novel Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 3 1 1 84 1 24073467 24073488 GGACTGATTTCCAATGAATGAC 58 24072702 24073423 ACAACTGTATGTGCTGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016572.1 ENSRNOG00000061005 ENSRNOT00000091905 3 1 1 91 14 104709191 104709209 AAGGGACACTTGGTGTCAC 60 104709264 104714090 ATCATCACAGGACCTGCAC 60 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 1 1 1 60 4 132914657 132918153 CTCACTCAGGCTTCTGGAC 60 132918177 132918195 CCTGTGATCTCATGTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048899.1 ENSRNOG00000059047 ENSRNOT00000086922 3 1 1 67 5 96373224 96373242 AGTGCTTTCATTACCGCAG 59 96378138 96378162 CTTGAGGAAATACTTTGATCCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061652.1 ENSRNOG00000060755 ENSRNOT00000084399 2 1 1 101 4 137966049 137968659 AATTAGTGGGAAAGGACGC 58 137965966 137965984 TTTGGAGCATGACCTTGTG 58 Novel Rattus norvegicus 81 AABR07048966.1 ENSRNOG00000059515 ENSRNOT00000088835 2 1 1 80 5 98793891 98812084 GGAAGTACAGGATGTCGGA 59 98812127 98812146 TCAGAAGTCCCAAATGGGAG 60 Novel Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 3 1 1 61 1 30666714 30666737 CCTGGATTCTATTTCTACACAGTC 59 30666190 30666695 ACCATTCACTTAGTCAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000986.1 ENSRNOG00000054753 ENSRNOT00000089420 3 1 1 80 1 31003577 31003597 CTGAAGAAGTTATGTGATGCC 57 31002549 31003537 GTTTGTGGAGATAAACCTGTC 57 Novel Rattus norvegicus 81 AABR07016721.1 ENSRNOG00000057717 ENSRNOT00000084993 2 1 1 95 14 112467128 112467146 TTTCCTAGATGTCGGAGCT 58 112423077 112467071 TTGAACTTGGACTTACTCGTG 58 Novel Rattus norvegicus 81 AC094236.1 ENSRNOG00000058836 ENSRNOT00000091241 3 1 1 83 4 148628664 148628993 TCAGAAAGGTCTGAGGACG 59 148628599 148628617 TTCTTCGGAAGACTTGGCT 59 Novel Rattus norvegicus 81 AABR07016731.1 ENSRNOG00000054144 ENSRNOT00000086364 2 1 1 81 14 113149797 113149974 CAGACATATCTTTAACCAGTGGC 60 113150015 113150033 GGGTGTATCAGCACTCCTG 60 Novel Rattus norvegicus 81 AABR07016845.1 ENSRNOG00000060365 ENSRNOT00000087777 3 1 1 114 15 1618059 1618080 TAGGAGCTCTTTGAAGTTAAGG 58 1492733 1617986 CTGTTCATTGGAAACCAAGAC 58 Novel Rattus norvegicus 81 AABR07062020.1 ENSRNOG00000053503 ENSRNOT00000092107 2 1 1 60 4 156469096 156469114 TCCTCCACGATGACATGAG 59 156468285 156468303 AGGGCAGTGAATACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049148.1 ENSRNOG00000055285 ENSRNOT00000089642 2 1 1 80 5 107586009 107586827 AACCATCAGTACTGGTGACTG 60 107586868 107586887 CATTTGCTGGAGATGCTGTC 60 Novel Rattus norvegicus 81 AABR07017145.1 ENSRNOG00000060863 ENSRNOT00000086616 3 1 1 73 15 12756899 12792303 TCAATGGTACAACAGCTCCA 59 12792339 12792357 AAATGTGAAGCTGGAGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001054.1 ENSRNOG00000055337 ENSRNOT00000089405 1 1 1 85 1 35884478 35885091 GAAGTGCTTGTGAGAATGCT 59 35884412 35884436 CATCTTTATTGCTCTGAGAGTAGTG 60 Novel Rattus norvegicus 81 AABR07062112.2 ENSRNOG00000058933 ENSRNOT00000084779 2 1 1 73 4 161527282 161527300 TTCACAGAGGCTCTTTCCC 59 161519854 161519872 TCTTCGAAGTTTCAGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062112.1 ENSRNOG00000056752 ENSRNOT00000083544 2 1 1 60 4 161519685 161519703 AGAACTTCACCATCCTGCA 59 161519827 161519845 ATACACAGCAAGGTCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017208.1 ENSRNOG00000055393 ENSRNOT00000083766 1 1 1 62 15 17954205 17954223 GTACCCGATGGTGTCTTCC 60 17951598 17951619 CTGTAGTTCTTCATGACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049514.1 ENSRNOG00000058427 ENSRNOT00000087262 2 1 1 68 5 125221831 125221849 ACCATACTTGGATGCTTCC 57 125222746 125222767 GAAGTTGGTTAGAAGTTGAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062329.1 ENSRNOG00000051629 ENSRNOT00000087030 1 1 1 69 4 169280816 169280834 CTCAACCTGACCTTCCCAG 60 169287029 169287047 ATGATCACTGCTCTGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 2 1 1 74 11 7581427 7582417 GAAGAGTCTACAAAGGCTGAG 58 7582452 7582471 CCATGGTTATTTGTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017491.1 ENSRNOG00000059269 ENSRNOT00000079751 2 1 1 81 15 23381798 23381816 ATTTCACCTCCCAGTTTCC 57 23381861 23382067 GAGATCATCAAGCCCTCTG 57 Novel Rattus norvegicus 81 AABR07062404.3 ENSRNOG00000055801 ENSRNOT00000091157 1 1 1 104 4 175146847 175150908 GCACTCATACAGAGCACAC 59 175150976 175150994 TTTAGTGCTCACAGTTGGG 58 Novel Rattus norvegicus 81 AABR07062404.3 ENSRNOG00000055801 ENSRNOT00000091157 3 1 1 106 4 175146847 175150908 GCACTCATACAGAGCACAC 59 175150977 175150996 TCTTTAGTGCTCACAGTTGG 58 Novel Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 3 1 1 61 11 11653077 11653096 AAGGCTGCTGGATTCTACTG 60 11641731 11653053 TATGATTGGCTCGGTAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033249.1 ENSRNOG00000055160 ENSRNOT00000089916 1 1 1 83 11 13072755 13108242 AAAGAAAGCACTTTGGAGTCAG 60 13108285 13108304 GCTTCATCGTGAGAAAGTCC 59 Novel Rattus norvegicus 81 AABR07062477.2 ENSRNOG00000052597 ENSRNOT00000080805 1 1 1 80 4 179210150 179210169 TACCCATGCTCAAGGTTCTG 60 179210210 179210604 TATTCAACCTCTGCTCTTCCA 59 Novel Rattus norvegicus 81 AABR07031551.1 ENSRNOG00000053324 ENSRNOT00000085695 2 1 1 80 18 19619796 19619817 CTCAGGTCTTCAGTAAGAAGCT 60 19618306 19619757 TTCCCTTTCCAGATTACCCTG 60 Novel Rattus norvegicus 81 AABR07062528.1 ENSRNOG00000057693 ENSRNOT00000083722 3 1 1 103 4 181235363 181236674 CCTTGGATTTGAGAGCTGG 58 181236741 181236759 AACAAGTTTCTCTTCCGGC 58 Novel Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 1 1 1 60 15 30870087 30870105 CACAGAAGCCTGGAAACTC 59 30868135 30870063 TCTTGAGGACACTCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.4 ENSRNOG00000057468 ENSRNOT00000086445 1 1 1 78 4 181686279 181686297 GAAACTGGCCTTTGATGGT 58 181686144 181686168 CCTGTGTCCTTGTTAATATCTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049804.1 ENSRNOG00000059592 ENSRNOT00000085217 3 1 1 81 5 138911879 138911897 AATGTTCGCCTAGCTTGGT 60 138909876 138911834 GCTCAGATTGAAGCAGGGA 60 Novel Rattus norvegicus 81 AABR07001555.1 ENSRNOG00000060475 ENSRNOT00000082248 3 1 1 92 1 51525306 51525324 TTCACCATTTGCGGAACAC 59 51525080 51525250 GCATCCATCTTGTCTGCTG 59 Novel Rattus norvegicus 81 AABR07017872.1 ENSRNOG00000053204 ENSRNOT00000081388 2 1 1 80 15 32099126 32106375 GATACATTATTTCCTGGGAGGTG 59 32106413 32106433 GAGTCTCCTTCAAAGACAGTG 58 Novel Rattus norvegicus 81 AABR07032119.1 ENSRNOG00000056227 ENSRNOT00000087183 3 1 1 87 18 47266274 47266293 GAAGTCTACAACCAGCAGTG 59 47265966 47266226 TAGGAAGAACCTGAGGTAACC 59 Novel Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 1 1 1 60 6 32359990 32414999 TTATAAGCTACATAGTGCCAGG 58 32359951 32359969 CTAAGCAAAGGCAGGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018116.1 ENSRNOG00000054194 ENSRNOT00000081842 3 1 1 81 15 40681587 40684482 GCTTCAGAAAGTCTTATGTACAGAG 60 40681530 40681549 GTGTCCAACTGCTGTATAGC 59 Novel Rattus norvegicus 81 AABR07063511.1 ENSRNOG00000051741 ENSRNOT00000082269 2 1 1 89 6 32592972 32595648 AATATTGAAGGGCTTGGTGTG 59 32592903 32592921 AGTGGAATCTCACGAGCTC 59 Novel Rattus norvegicus 81 AC142360.1 ENSRNOG00000055666 ENSRNOT00000090140 2 1 1 88 6 33561109 33561127 CCAAGCAACTTCTGCAGTC 60 33561179 33567604 CATGGGATGGCATTTCTGG 59 Novel Rattus norvegicus 81 AABR07001764.1 ENSRNOG00000058989 ENSRNOT00000086654 1 1 1 84 1 56745991 56746009 TTGAATGCTGGCACAACAC 60 56732610 56745945 CCAGAGCTTCTAGAAGTTGGA 59 Novel Rattus norvegicus 81 AABR07050265.1 ENSRNOG00000052537 ENSRNOT00000087936 3 1 1 61 5 158641391 158641409 CAACTTCAAGACAGACGGC 59 158641348 158641366 CAGTTATGCCACTTACCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018198.2 ENSRNOG00000057138 ENSRNOT00000081990 3 1 1 95 15 46523030 46527882 CCTATATGGTCCTGGCTCC 59 46527941 46527959 AGAGGAAGTGACAGTCGTG 59 Novel Rattus norvegicus 81 AABR07018198.1 ENSRNOG00000055062 ENSRNOT00000077737 1 1 1 80 15 46537668 46537686 CTACTGGGAGGTGAGAGTG 59 46537729 46547649 CTGTAAGGCATCATGTTCCA 58 Novel Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 3 1 1 69 15 52501655 52501673 CTCTGAAGAGCTGTTGAGC 58 52501706 52502272 CATCATAACTGCCTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018373.1 ENSRNOG00000061561 ENSRNOT00000086565 1 1 1 85 15 54700551 54700569 GACCACAATGTCAAGACCA 58 54701987 54702007 AATCCCATACGAAGTACAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018438.1 ENSRNOG00000054138 ENSRNOT00000089311 3 1 1 60 15 57860575 57860594 AGGTCTTCATGTTTGACCAC 58 57860750 57860769 AGCTTTCTGTTTCACTGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000091112 3 1 2 81 6 44732819 44732838 ATTTACCTTGGTTTGCTCCA 58 44732879 44733611 GTTGATATCCTGAATCGTAGGA 57 Novel Rattus norvegicus 81 AABR07018503.2 ENSRNOG00000058815 ENSRNOT00000084849 2 1 1 83 15 62248565 62248584 CAATCAAAGACCACCTTCCA 58 62232225 62248519 TTTCTCTGAGCCAAGAGGT 58 Novel Rattus norvegicus 81 AABR07002682.1 ENSRNOG00000056832 ENSRNOT00000084874 2 1 1 96 1 80944244 80944262 TTCTGGGAAGTGTAGTCCG 59 80944320 80951100 GATGGAGACCTTTCTGAAAGG 58 Novel Rattus norvegicus 81 AABR07032518.1 ENSRNOG00000060022 ENSRNOT00000084630 2 1 1 85 18 69682799 69682817 GAATGTTCACCTCGTCCAG 58 69681085 69682752 TAGGGTCTCCTTCATTCACAG 59 Novel Rattus norvegicus 81 AABR07051218.1 ENSRNOG00000059773 ENSRNOT00000079427 3 1 1 80 3 1644002 1645307 GAGACCTCTAGTAAGGTTTCC 57 1645346 1645367 ACTTACAGACTTGATTCCAGAC 58 Novel Rattus norvegicus 81 AABR07002845.1 ENSRNOG00000055006 ENSRNOT00000080451 2 1 1 107 1 86803123 86803580 CTACCTGGAAAGTTCATCCAC 59 86803036 86803054 TCAGTGTCCACTAGCACAG 59 Novel Rattus norvegicus 81 AABR07002848.2 ENSRNOG00000055681 ENSRNOT00000087482 1 1 1 63 1 86857682 86857700 AAGCTGCCATACTCCTTGG 60 86858397 86858415 CTCAGGCATCTGTCTGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051310.1 ENSRNOG00000052734 ENSRNOT00000088404 2 1 1 80 3 4763290 4766181 TTCTATGAGATCATGAGGAAGC 58 4763231 4763249 CACAAAGGACGACATCCTC 58 Novel Rattus norvegicus 81 AABR07032640.2 ENSRNOG00000061667 ENSRNOT00000079857 2 1 1 83 18 75694846 75694864 CTTAAGGAGGCAAGCAGTG 59 75693408 75694800 CGAATCTTGAGCCTTCTTCC 59 Novel Rattus norvegicus 81 AABR07064131.1 ENSRNOG00000059696 ENSRNOT00000085271 3 1 1 81 6 65779384 65782283 TGAGGAAATTGAAGAACTCTGG 58 65782323 65782343 GATAAATCAGTGCCGAGTCAG 59 Novel Rattus norvegicus 81 AABR07002910.1 ENSRNOG00000061774 ENSRNOT00000079616 2 1 1 81 1 88974817 88974931 TCATGACCAACCTCCTGTG 59 88974976 88974994 AATAGCACATCAGGGCTGG 60 Novel Rattus norvegicus 81 AABR07032786.1 ENSRNOG00000057629 ENSRNOT00000079901 2 1 1 61 18 82063603 82063621 AGTAGCAGGTTCATGTGCT 59 82077306 82077324 TTGGCGATGTTCTCATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019392.1 ENSRNOG00000051611 ENSRNOT00000087914 1 1 1 60 15 103673206 103673224 CTTTCCTTGGAAGTCCCTC 58 103675011 103675031 TAATTCTTCTTGGAGGCTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 1 1 1 60 15 105203100 105205012 AAAGTAACGCTGACTTCGG 58 105205033 105205054 TTACAAGAATCTTCAGCCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019435.1 ENSRNOG00000055868 ENSRNOT00000080782 2 1 1 81 15 105349769 105349787 AAGAGGACAAGGGTGAGTG 59 105341799 105349725 GTAGGTGGAATGAACTGGTC 58 Novel Rattus norvegicus 81 AABR07051666.1 ENSRNOG00000055767 ENSRNOT00000083837 2 1 1 80 3 18996930 18997165 TTAGTGCCACAGTCATAGTG 57 18997208 18997226 TCTTCCCAGGAGATGTAGC 58 Novel Rattus norvegicus 81 AABR07033292.1 ENSRNOG00000060259 ENSRNOT00000079502 2 1 1 67 11 16276014 16276032 ACATTTGGTTGCTGATGGC 59 16274834 16274853 CAGCTCTGAGATTACAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020222.1 ENSRNOG00000056953 ENSRNOT00000086183 3 1 1 80 13 18648427 18650495 TTCACCCAAAGAAGGAAGC 58 18650539 18650557 CATTCCAGCTAGTGACAGC 58 Novel Rattus norvegicus 81 AABR07003056.1 ENSRNOG00000055248 ENSRNOT00000088377 1 1 1 80 1 95430463 95430482 GTGATCTTCAAGTTGGAGCA 58 95430522 95432568 TTTATGAATACCTGGAAGGCTG 58 Novel Rattus norvegicus 81 AABR07033492.1 ENSRNOG00000059033 ENSRNOT00000090241 3 1 1 80 11 24042631 24042652 CATATGAGAGGTAACAGTTGGC 59 24034357 24042591 TCTTGTACGTCCATCCACTG 60 Novel Rattus norvegicus 81 AABR07020736.1 ENSRNOG00000052801 ENSRNOT00000079817 1 1 1 62 13 37139730 37139748 AGAGAAACAAGGAGGGCAC 60 37138100 37138119 CTGATTCTTCCCACAGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC120807.1 ENSRNOG00000053946 ENSRNOT00000082025 1 1 1 133 1 102087258 102087276 AAATGTGGAAGACGGAGCA 60 102087373 102088599 TCCAATTCCAGTCCACCTG 59 Novel Rattus norvegicus 81 AABR07020802.1 ENSRNOG00000061545 ENSRNOT00000078594 1 1 1 80 13 41370354 41370372 AAGTCCTGCTGTGATCGTC 60 41370412 41370663 GGTTCTCGTTTATATGATGGCTC 60 Novel Rattus norvegicus 81 AABR07033645.1 ENSRNOG00000054634 ENSRNOT00000083195 3 1 1 98 11 33093549 33093568 GTGGTATAGAAGCTGGTGCA 60 33084752 33093488 CCTTGGTTCTCCACCAGAG 60 Novel Rattus norvegicus 81 AABR07020979.1 ENSRNOG00000060611 ENSRNOT00000090709 2 1 1 88 13 49965985 49970697 CACATTCAAACAGGTGCTG 58 49965915 49965936 CCTCTTGAACAAAGTTTGTAGC 58 Novel Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 2 1 1 70 11 35609377 35609397 TTAGGAAAGGAACAAGTGGAG 58 35609426 35611103 GTTTGCTCTTCCTACATTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033720.1 ENSRNOG00000061472 ENSRNOT00000088309 3 1 1 96 11 37475012 37475031 AGCTTCAGCACCTTAATCCA 60 37459843 37474953 AAACAGCCTTGATGTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021023.1 ENSRNOG00000052244 ENSRNOT00000078629 2 1 1 82 13 53875992 53877568 TGGGACCTTAGGAAGATCC 58 53877614 53877632 CCGAACTCCATCACTTGTG 59 Novel Rattus norvegicus 81 AABR07065274.1 ENSRNOG00000060324 ENSRNOT00000081529 1 1 1 80 6 118508322 118518755 ATGAGAAAGTGGCTTCATTCTC 59 118518794 118518814 ATGTAGTGAGTACAAGCTCCT 58 Novel Rattus norvegicus 81 AABR07033836.1 ENSRNOG00000060455 ENSRNOT00000086172 3 1 1 111 11 39710273 39756284 ATGATGAAGGCGAATGCTG 59 39756359 39756377 CAAAGGACAGTCCTGAGGT 59 Novel Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 3 1 1 60 1 108839948 108840322 CTCCCTTGAGGATTGAAAGG 58 108839907 108839925 GACCATGGAGCTGTTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052387.1 ENSRNOG00000061109 ENSRNOT00000088407 2 1 1 80 3 50512938 50512956 AGGAATGCAAAGCACATCG 59 50507863 50512898 GTCTTCTACCTCTAAGTAGCCAG 60 Novel Rattus norvegicus 81 AABR07021357.1 ENSRNOG00000054544 ENSRNOT00000083880 1 1 1 138 13 67695064 67695084 CCCTGACTCTGATGAAATCCT 59 67695184 67749218 GATTGCCACATGTCTGTCG 59 Novel Rattus norvegicus 81 AABR07052389.1 ENSRNOG00000055701 ENSRNOT00000083309 2 1 1 80 3 50816227 50816246 GTGTCTGCTGCTAATTGAGC 60 50816283 50817624 GCAGACATATAGACACTTAGTTCTG 59 Novel Rattus norvegicus 81 AABR07021411.1 ENSRNOG00000052592 ENSRNOT00000090948 3 1 1 109 13 70832333 70832353 AAGGTGGTATGTATCAGACAC 57 70830892 70832263 GTCTGGAGAACCATCATCTG 58 Novel Rattus norvegicus 81 AABR07034239.1 ENSRNOG00000059216 ENSRNOT00000078294 2 1 1 90 11 57994607 57995055 TAGAATGCTACGGAGGTCAC 59 57994536 57994554 TTGATCGTTCGCATGTTCG 59 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000079357 2 1 2 86 1 118050498 118050516 AAGATGCTGCTATGGTCAG 57 118050564 118076990 TCACAGTGTAACCTTTATGGG 58 Novel Rattus norvegicus 81 AABR07072876.1 ENSRNOG00000052074 ENSRNOT00000082826 3 1 1 83 3 62290082 62292724 AAAGAAAGGACACCAGAGC 58 62290017 62290037 TCTCTTCTGATAACTAGGCCC 59 Novel Rattus norvegicus 81 AABR07052587.3 ENSRNOG00000053470 ENSRNOT00000078374 2 1 1 81 3 64154798 64154816 CCCTCCCATCTTCACTGTG 60 64154860 64155100 GAAGGAAACATGGTCCACAG 59 Novel Rattus norvegicus 81 AABR07021730.1 ENSRNOG00000055968 ENSRNOT00000087825 1 1 1 60 13 88130769 88130790 GACTGTGTTCAAGACATTTCAC 58 88077624 88130750 ACTAAGTGTGATACACCATGC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 1 1 1 64 1 124929435 124929453 AAGTACACATGGGACGTGG 60 124929126 124929407 AACAACCTTGTTCTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC125847.3 ENSRNOG00000058735 ENSRNOT00000090280 1 1 1 80 6 129441398 129442821 CATCCAGGTGATAGGGTGG 59 129442865 129442883 TCTCTTCTTCCTCAGGCCT 60 Novel Rattus norvegicus 81 AABR07004130.1 ENSRNOG00000053064 ENSRNOT00000085207 3 1 1 81 1 126387455 126403287 GAAGCTGTGGGTAACTCCA 59 126387392 126387412 TCGTCTTAGAGAAGGTTTCCC 59 Novel Rattus norvegicus 81 AABR07052697.1 ENSRNOG00000056417 ENSRNOT00000090069 1 1 1 80 3 69694883 69760825 AGAGTGATCTTACGTGATCCAC 60 69760866 69760884 GTGGCTTGGTATCTTGGGA 59 Novel Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 3 1 1 60 3 71108013 71109786 GAAGCTAGGTTACTGAAGACC 58 71107973 71107992 AGTTTGGTGCTGAAGTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034833.2 ENSRNOG00000056188 ENSRNOT00000083437 2 1 1 80 12 57530 57891 TGACTACATGGCATTTGACAG 59 57470 57492 GTGATCCAATTAGACACCTTCAG 59 Novel Rattus norvegicus 81 AABR07034991.1 ENSRNOG00000057612 ENSRNOT00000090701 1 1 1 80 12 2938843 2940285 AGGTTGGACTAAACTCCCT 58 2938781 2938799 AACAGTTTCCACTGTCGAG 58 Novel Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000090877 3 1 2 80 13 101999536 101999554 GATGTTGCCACCATACTCG 59 101999595 102018729 ATCCTGTAGATCTCCAGTAGTG 58 Novel Rattus norvegicus 81 AABR07065602.2 ENSRNOG00000056047 ENSRNOT00000087717 2 1 1 112 6 137122255 137122273 CAGGTCTCCTCCAAGTGTC 59 137121518 137121536 GCAGAGTTCTCAACTTGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022053.1 ENSRNOG00000056789 ENSRNOT00000084790 3 1 1 82 13 104469601 104469621 AGGGAAACTAAAGCAAACGAG 59 104469665 104470645 GTGACAGCCTCTTGAATCG 59 Novel Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 1 1 1 73 6 141112439 141112565 GATGTCCAGTGTGAAGTACAG 59 141112386 141112404 GAGAGTTTCAGAGAAGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035083.1 ENSRNOG00000059996 ENSRNOT00000079086 1 1 1 63 12 4170958 4170982 CATATCTATACTGAAGTGACAGAGG 58 4177600 4177618 GAACAAGGCCATGTCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 1 1 1 66 6 142405223 142405346 AAGGTTTGCACTGTGAGGT 60 142405175 142405193 AATGACCCTTTAGGCTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 1 1 1 152 12 9332097 9332589 GTCTCCTCCTTGAACCAGG 59 9332705 9332723 TAAATACTGCCCACACCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066114.2 ENSRNOG00000052777 ENSRNOT00000088946 1 1 1 60 9 3026497 3026517 GAAGTGATTTCAAAGTGCCTG 58 3026457 3026478 TTGTTCTGATGATTTCCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065933.2 ENSRNOG00000059254 ENSRNOT00000079602 3 1 1 101 6 146981840 146981860 ATTTGGAGATGATAGAGCCAG 57 146981920 146987959 CCATTTCTATGTTGAACACGAG 58 Novel Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 3 1 1 213 12 13450152 13450170 TCCAGAGTCACAACTGTCC 59 13450460 13450813 GAATTTCTTCGAGTACACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC117065.1 ENSRNOG00000052121 ENSRNOT00000077316 1 1 1 85 12 16240736 16240755 GCTTGGAAAGCAAGACTCTC 59 16240556 16240688 CTAGAGCACTCGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537,ENSRNOT00000078486 2 2 2 91 3 108624646 108640203 TCAAGTAGCACGATGTGGA 59 108624573 108624591 TCAAACAGTCCTTTGCAGC 59 Novel Rattus norvegicus 81 AABR07035506.1 ENSRNOG00000059429 ENSRNOT00000088655 1 1 1 99 12 18421364 18421383 CCATCTCATTCACAGAGCCT 60 18419682 18421303 AGTTGGGTGTAACTGAAGGG 60 Novel Rattus norvegicus 81 AABR07035561.3 ENSRNOG00000058864 ENSRNOT00000079265 3 1 1 60 12 19705835 19705856 ATACTTCTGTAACATCTGCCTG 58 19705877 19705895 AGGAATCCACTGCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053483.1 ENSRNOG00000056645 ENSRNOT00000085500 1 1 1 60 3 109815389 109815409 TCTCATTTAGAGGATGTGCCC 60 109815231 109815253 CAAGGTGGTAGAAAGACAATAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053710.2 ENSRNOG00000056972 ENSRNOT00000092011 1 1 1 98 3 121567833 121567853 GCCATGATGTTCATTACAGTG 58 121567913 121568109 AGCCATCTCCCATAGACTC 58 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 3 1 1 61 12 22339005 22339024 AAATCTCAATGTGGCTGCAG 59 22339048 22339404 ATCCAGTTCTTCCCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066870.1 ENSRNOG00000061014 ENSRNOT00000082099 2 1 1 101 9 20339528 20340806 CTTGGATAACAAGATGCGGC 60 20332773 20332796 GGCTTGGTAACAATATCTGAAGAG 60 Novel Rattus norvegicus 81 AABR07035782.1 ENSRNOG00000057201 ENSRNOT00000087948 3 1 1 80 12 22386805 22386825 GTGACTTTGGTTATGGAGGAG 59 22386866 22388593 CTAAGCTGGATGCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07005031.2 ENSRNOG00000060840 ENSRNOT00000078119 3 1 1 100 1 176050353 176050371 AACATGAACACAGGAGCAC 58 176050434 176052781 GAGTCTTCGATTCCTCTGGA 59 Novel Rattus norvegicus 81 AABR07035790.2 ENSRNOG00000061009 ENSRNOT00000085223 2 1 1 85 12 22512875 22530798 CCAGAAGTTTCTGGTCTAAGAG 58 22530843 22530862 GTTGAATTTGTGCTGCTTGG 59 Novel Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 1 1 1 89 9 26953193 26953211 CGAAGCTGTAGGAGTAGGG 59 26952793 26953140 AGTCGATCACATTGGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025345.1 ENSRNOG00000060160 ENSRNOT00000084750 2 1 1 90 16 34496898 34496916 AAGATCAAACTGCCTCTGC 58 34494259 34496844 TATCGATGAGCCTTCAGCA 59 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 3 2 3 64 3 142293162 142297266 AGATCATGGATGTACCTTCCA 58 142293118 142293136 GAATGCAGGGTCTCCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005593.1 ENSRNOG00000054843 ENSRNOT00000080401 2 1 1 80 1 189698796 189698817 ACAGATCACTACTACATTGCTC 58 189697264 189698758 GAGGTACTCAATGTATGACTGG 58 Novel Rattus norvegicus 81 AABR07067402.1 ENSRNOG00000052570 ENSRNOT00000085189 3 1 1 80 9 43312434 43312453 TTCAACAGGGATTTAAGCCA 58 43312495 43315139 CTCCCTGTAAGCAACTTGAG 58 Novel Rattus norvegicus 81 AABR07005758.1 ENSRNOG00000057349 ENSRNOT00000086583 2 1 1 93 1 196399108 196415137 TCTATGTCTGAATCAAGGTCTCTG 60 196399038 196399059 GCAGCTAGGATTTAACCATGTC 60 Novel Rattus norvegicus 81 AABR07036080.2 ENSRNOG00000054502 ENSRNOT00000087264 1 1 1 80 12 33700258 33700278 GAAGATGAGAAGACCCAAGAC 58 33700320 33719519 CATGCTTTCCTGCAATCGA 59 Novel Rattus norvegicus 81 AABR07054341.2 ENSRNOG00000056754 ENSRNOT00000085752 3 1 1 74 3 148997114 148997132 CTAGATACTGGGATCCGGG 58 148999131 148999150 TAAACATCAAGGTCTGCTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025986.1 ENSRNOG00000057136 ENSRNOT00000083270 3 1 1 61 16 57841702 57841722 TCCTTTGTGACTATGTAGCTC 57 57841745 57849412 TCTACTGGAATCTGGGCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 3 1 1 61 9 49134035 49134054 AAGAAGACACATCAAGCCAC 59 49134078 49135004 GAAGCTGTTGAGATCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005837.2 ENSRNOG00000054093 ENSRNOT00000091587 3 1 1 81 1 202712650 202714398 TATCATCTGTAAGCAGGCCC 59 202712588 202712610 AGCCATAACCAGAAAGACTAGAG 60 Novel Rattus norvegicus 81 AABR07054487.1 ENSRNOG00000061326 ENSRNOT00000087135 1 1 1 80 3 156368666 156368684 CCGAGAAATGTCCAGTCAG 58 156368515 156368622 CTTTCCCATCTGTGAACCT 57 Novel Rattus norvegicus 81 AABR07036413.1 ENSRNOG00000054311 ENSRNOT00000084328 3 1 1 62 12 42519290 42519309 AGGGATCTCAGATACCAACC 58 42518433 42518451 CATGACGGAGATGGAACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005950.2 ENSRNOG00000061500 ENSRNOT00000086515 1 1 1 80 1 208521669 208521690 CCTAGAGCTTCATTCACAAGAG 59 208521729 208522446 CTCACAGCTGAATGAATTGTG 58 Novel Rattus norvegicus 81 AABR07026144.1 ENSRNOG00000052907 ENSRNOT00000079928 1 1 1 80 16 65430055 65521970 ACTAAGATCCTTTCAAGCCCA 59 65522011 65522030 CAGAAGACTGTCCAACTGTG 59 Novel Rattus norvegicus 81 AC114391.1 ENSRNOG00000052249 ENSRNOT00000080762 2 1 1 80 16 75649837 75649855 TCAGGGATCTTAAGGTGGG 58 75649899 75663334 GAGACAGTTCCTCTCAGCA 59 Novel Rattus norvegicus 81 AABR07054753.1 ENSRNOG00000060628 ENSRNOT00000088118 3 1 1 80 3 168643683 168646277 TAGATAAGTGCTCCTCTGGC 59 168646320 168646338 GTCTCATGAATGCAGGGAG 58 Novel Rattus norvegicus 81 AABR07068066.3 ENSRNOG00000059378 ENSRNOT00000085631 2 1 1 80 9 80687923 80691641 GAAATCTTGGTGGTCAAACG 58 80687862 80687880 AGAATGCCTTGGATTGCTG 59 Novel Rattus norvegicus 81 AABR07037528.1 ENSRNOG00000061366 ENSRNOT00000082703 2 1 1 86 X 23218330 23218349 GTGATCTGATCATGACAGCC 59 23218398 23218989 CTTCCCAAACCTGGTTGAC 59 Novel Rattus norvegicus 81 AABR07022202.2 ENSRNOG00000055953 ENSRNOT00000078199 2 1 1 112 13 112800567 112800586 TGAAATTCCCTCATCTGGAG 57 112789664 112800495 GTCCAGATGTACATGAATATGC 57 Novel Rattus norvegicus 81 AABR07022202.2 ENSRNOG00000055953 ENSRNOT00000078199 3 1 1 113 13 112800568 112800587 CTGAAATTCCCTCATCTGGA 57 112789664 112800495 GTCCAGATGTACATGAATATGC 57 Novel Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000080924 3 1 2 62 3 174035648 174035666 ACATCTCTTGAGCTGCTGG 60 174040628 174040647 TGAATTCTTCTGAGGCCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 1 1 1 60 1 229097609 229097628 GGACTTCTCATTGCAGACAC 59 229097650 229100202 TTCTTGCTCCTTGAACAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 2 1 1 61 1 229097608 229097626 AGGACTTCTCATTGCAGAC 57 229097650 229100202 TTCTTGCTCCTTGAACAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026499.1 ENSRNOG00000058718 ENSRNOT00000084061 2 1 1 80 16 79300001 79300904 GCGGTAGCTTTGTGTTGTC 60 79300946 79300966 TGACAGCATCTTCTGTCTCAG 60 Novel Rattus norvegicus 81 AABR07026519.1 ENSRNOG00000057746 ENSRNOT00000087361 2 1 1 62 16 80703767 80703785 ACAGGAAGTGACCTCACAG 59 80702528 80702546 CCACCTTATGTTGCAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006453.1 ENSRNOG00000052693 ENSRNOT00000084649 2 1 1 82 1 235023306 235056625 GAATCATCCATGAAAGGTCCTC 59 235056668 235056686 CATGGAAAGCCAAAGGCAG 60 Novel Rattus norvegicus 81 AABR07026534.3 ENSRNOG00000056791 ENSRNOT00000087854 2 1 1 62 16 81262040 81262058 GAACAAGACAGCTTGAGCC 59 81265336 81265354 CCTCGGCAAGAGTCTAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038174.1 ENSRNOG00000057678 ENSRNOT00000089445 3 1 1 63 X 41879023 41879042 TGCTCCTGGTAATAAAGGCT 59 41876407 41876428 GCCAGTACATAGGGTATAACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC096938.1 ENSRNOG00000059836 ENSRNOT00000087316 1 1 1 67 16 82123529 82123547 CACACTAACCAACACGGAG 59 82120948 82120966 TACAAGGTGAGGAAGCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068212.1 ENSRNOG00000059666 ENSRNOT00000085860 1 1 1 80 9 90930910 90932160 GAGCAGAAGTATCAGGAATGTC 59 90932199 90932219 GTCACTGAGGATGTCATACAC 58 Novel Rattus norvegicus 81 AC112440.1 ENSRNOG00000057332 ENSRNOT00000090483 3 1 1 80 9 93432179 93432197 ACCACTATGTTGGAGACCA 58 93427897 93432135 ATGCACAAGGACCTTTGAG 58 Novel Rattus norvegicus 81 AC095563.2 ENSRNOG00000059544 ENSRNOT00000083435 1 1 1 72 9 95362215 95362233 ATGCGCATTACTTCATGCG 60 95383870 95383888 CTCCATAAGGGCCTTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026576.1 ENSRNOG00000058075 ENSRNOT00000078491 2 1 1 80 16 84212867 84213819 GTCTAGCTGTAACCATCAAGGA 60 84213860 84213878 TACTCATTCCTGCAGTGGG 59 Novel Rattus norvegicus 81 AABR07039206.1 ENSRNOG00000060462 ENSRNOT00000082606 3 1 1 66 X 71711114 71711133 GTTAAGGAAATTGCCCATGC 58 71710528 71710546 GATACATGCACACGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000084627 3 1 2 61 X 72724627 72724645 AAGATGAAGGAACGTCCTG 57 72724962 72724980 ATGTGTCCAATTGCACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006657.1 ENSRNOG00000053314 ENSRNOT00000081785 2 1 1 100 1 245097194 245099423 CATGATAGAGCTGACCTGG 57 245097112 245097130 TTGGTCCAGTCTTGAACTC 57 Novel Rattus norvegicus 81 AABR07056103.1 ENSRNOG00000054038 ENSRNOT00000083267 2 1 1 82 7 20217442 20217460 GAAAGAAGTGGGAGTGCTG 59 20207987 20217396 CTAACTTCATCCAGCCTGG 58 Novel Rattus norvegicus 81 AABR07068400.1 ENSRNOG00000053724 ENSRNOT00000078836 2 1 1 65 9 103249262 103250499 AAGATCCTGGAGAATGAAGAC 57 103249217 103249237 GTTAAGAGCTTATTCGCTGGT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07068554.1 ENSRNOG00000060095 ENSRNOT00000079939 1 1 1 80 9 108257976 108278530 ACAGTACAAGTTTCCATGCT 58 108257915 108257934 AGTGACAAGCTAGCTTTCAC 58 Novel Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 3 1 1 75 9 113788532 113800862 CAAGTGCCTCATTCAGGAG 58 113788475 113788493 CAGCATGCACTCCTTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068709.1 ENSRNOG00000056020 ENSRNOT00000087394 2 1 1 62 9 115804356 115804374 AGGAATCCCACAATCCCAG 59 115806178 115806196 TCCAACCAGAATCTTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056509.1 ENSRNOG00000054383 ENSRNOT00000085247 2 1 1 146 7 27589983 27590001 CGGGATCGACATCATTCTC 58 27591055 27591073 CACTGTTCTGCACTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.2 ENSRNOG00000060517 ENSRNOT00000088160 3 1 1 81 8 5154330 5154843 CCTCGAGAAATTTGATCTCAGG 59 5154270 5154289 ATCAGATGGAAGGCCTTCAC 60 Novel Rattus norvegicus 81 AABR07027190.2 ENSRNOG00000060391 ENSRNOT00000077614 2 1 1 80 17 18875293 18879424 CAGGATGAAGTTAGGGAGC 57 18879466 18879486 GAGTCATAACCTCCATGACTG 58 Novel Rattus norvegicus 81 AABR07056710.1 ENSRNOG00000055041 ENSRNOT00000092134 1 1 1 95 7 37647165 37647189 CCTGTACTCTTCACTAAATCATGTG 60 37647240 37647966 AAGAAGACAGCAATCACTCAC 59 Novel Rattus norvegicus 81 AC096311.1 ENSRNOG00000052225 ENSRNOT00000088181 3 1 1 111 1 267466119 267466139 CTCATTTCAACAGGAATCCCT 58 267464195 267466046 CTATGAGGGTGACCTTGGT 58 Novel Rattus norvegicus 81 AABR07069213.1 ENSRNOG00000054064 ENSRNOT00000090411 2 1 1 87 8 12644484 12644835 CAGACTGTGAGGTCCTTCG 60 12644415 12644433 CTAGCTTCAGAGACCCAGC 60 Novel Rattus norvegicus 81 AABR07069213.1 ENSRNOG00000054064 ENSRNOT00000090411 3 1 1 89 8 12644484 12644835 CAGACTGTGAGGTCCTTCG 60 12644413 12644432 CACTAGCTTCAGAGACCCAG 60 Novel Rattus norvegicus 81 AABR07043031.1 ENSRNOG00000052465 ENSRNOT00000086744 1 1 1 80 19 17986174 17986192 GTCCAGCTCAGGATAATGC 58 17986236 17987815 GTCTCCTTGAACCCATCCA 59 Novel Rattus norvegicus 81 AABR07043031.1 ENSRNOG00000052465 ENSRNOT00000086744 2 1 1 80 19 17986175 17986193 TCCAGCTCAGGATAATGCA 59 17986237 17987816 TGTCTCCTTGAACCCATCC 59 Novel Rattus norvegicus 81 AABR07027371.1 ENSRNOG00000056603 ENSRNOT00000077509 3 1 1 81 17 26845231 26845779 CTTCCTACATCCAAGGCCA 59 26845168 26845187 TCAAACAACGTCGATGACAG 59 Novel Rattus norvegicus 81 AC110709.2 ENSRNOG00000056269 ENSRNOT00000081549 1 1 1 80 1 274377426 274381312 GTCTGGAAGGTCTGGACAC 60 274381355 274381374 TCCTCTGGTCTTTAAGTGGG 59 Novel Rattus norvegicus 81 AABR07043276.1 ENSRNOG00000054414 ENSRNOT00000082006 3 1 1 80 19 26979285 26979307 ACTTAGAGATGGAGAACACTGAG 59 26979345 26981632 TGAGCAGGTTTCTAGAGAAGG 59 Novel Rattus norvegicus 81 AABR07006993.1 ENSRNOG00000060255 ENSRNOT00000081828 3 1 1 92 1 275674402 275674420 ATGGGAACAACACTTCCAG 58 275674476 275677168 GGATCCGCAGAAGTTACAC 58 Novel Rattus norvegicus 81 AABR07027693.1 ENSRNOG00000053010 ENSRNOT00000085851 3 1 1 111 17 40872953 40872974 AAGAACAAAGGGAAGAACTGAC 59 40872427 40872445 GACATCATCAGTGGATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC098190.1 ENSRNOG00000057169 ENSRNOT00000087051 1 1 1 69 2 5881487 5881506 GGTTGAGCCAATGAGATCTG 59 5879356 5879375 GCTGCTCTGGAATATTTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070087.1 ENSRNOG00000061855 ENSRNOT00000089529 2 1 1 127 8 51061844 51061864 GTCTTCCTTCTGAATCCACAC 59 51062744 51062762 CTTCCTCCTCTCCATCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 2 2 2 80 X 113550887 113550906 CCTGCAAACAACTATGGGTG 60 113550949 113581954 CTGAGGAGGTGTCTTTCCA 59 Novel Rattus norvegicus 81 AABR07058017.2 ENSRNOG00000053624 ENSRNOT00000079983 1 1 1 80 7 98718864 98722187 CTTATTAGTTGGAGGCCGGT 60 98718803 98718821 TAGACACGAAGTCCATGGC 60 Novel Rattus norvegicus 81 AABR07041247.3 ENSRNOG00000052259 ENSRNOT00000077131 3 1 1 87 X 124111983 124112003 CTGGAGACTTACTCAGAACCC 60 124111397 124111934 AGGAAAGTACAGTCTGGGC 59 Novel Rattus norvegicus 81 AABR07058167.1 ENSRNOG00000052211 ENSRNOT00000077182 3 1 1 81 7 103150050 103150069 TCACGTAGAAAGAACAAGCT 57 103149000 103150006 AAACCAAAGTACCTTGGCT 57 Novel Rattus norvegicus 81 AABR07029451.1 ENSRNOG00000056168 ENSRNOT00000077723 3 1 1 65 10 29084457 29084477 ACTCCTCTGCTTACATTAGGA 58 29085432 29085453 GCTTCTTCAGTCCTGTATTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070161.2 ENSRNOG00000052054 ENSRNOT00000083870 2 1 1 108 8 55535807 55536358 CACTAATGCTGGTGACGTC 59 55535717 55535735 TAAGATGGGCAGGTGAGTG 59 Novel Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122,ENSRNOT00000077631 3 2 2 90 X 137481924 137481942 AAACAAGACGGGAGGACTG 60 137478094 137478112 GAAGGCTTGGTAGGAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007765.1 ENSRNOG00000060072 ENSRNOT00000092049 2 1 1 80 2 27571277 27571297 TGATGAAACAGTGATTGAGGG 58 27571338 27574481 TGACTCAAGAACCTTCTCCA 58 Novel Rattus norvegicus 81 AABR07007775.1 ENSRNOG00000051888 ENSRNOT00000091950 3 1 1 81 2 27806897 27810676 CGTTAAAGGGATTCGTGATCC 59 27806836 27806859 GAATCTTATTCCCACTTCTGTTCC 60 Novel Rattus norvegicus 81 AABR07058412.1 ENSRNOG00000054589 ENSRNOT00000082481 3 1 1 72 7 115117442 115117460 GCTAAGACCACCTCTCCTC 59 115116798 115117406 CTGACCCACAGGAACAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07070272.1 ENSRNOG00000060681 ENSRNOT00000087466 1 1 1 83 8 62991844 62991862 TAGGTCCGTGAAGATCTGG 58 62991907 62992733 GTAACCTTTCTCTGCACTCTG 59 Novel Rattus norvegicus 81 AABR07007802.1 ENSRNOG00000055452 ENSRNOT00000089101 1 1 1 98 2 28881948 28881966 AACGCTCATGTACATGGGA 59 28879759 28881891 CCTTCATATCTGAAGGAAGATGAC 59 Novel Rattus norvegicus 81 AABR07059004.1 ENSRNOG00000051731 ENSRNOT00000085430 3 1 1 80 4 860282 860300 GACCAGTTTGACAAGCCTG 59 860342 865280 ATCTTCAAGTTCACTGTCCCA 59 Novel Rattus norvegicus 81 AABR07044492.1 ENSRNOG00000053996 ENSRNOT00000083619 1 1 1 90 20 8137873 8137892 GAGTGAAGGGTTTGAATGCT 59 8132479 8137820 GACTCCTTTGTAACCGTCG 58 Novel Rattus norvegicus 81 AABR07007896.1 ENSRNOG00000056649 ENSRNOT00000079589 3 1 1 93 2 34006782 34006800 GCAAAGGACTGATTGGCAC 60 33995946 34006728 ACATTTCTTTACCTCTCCTCGA 59 Novel Rattus norvegicus 81 AABR07044562.1 ENSRNOG00000052789 ENSRNOT00000082975 3 1 1 82 20 10613772 10613795 GGTTTGTAGAAAGAGAAGAACTCG 60 10613833 10614492 CTCGTTGATCTTAAACGCTCTG 60 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000088340 3 1 2 133 4 16828055 16828076 GTCTTCTATGTTCCAAACACGA 59 16828164 16829618 CTCCATCTACAGTGTTATTGTAAGG 59 Novel Rattus norvegicus 81 AABR07059495.1 ENSRNOG00000058980 ENSRNOT00000077494 3 1 1 111 4 21957008 21957029 CACAGCAGTTTGTTTCATTCTC 59 21957097 21957225 GAGGATCTTCCATTTCTCTTCTG 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089706 2 1 2 80 8 82416601 82416622 AACTGTTTATACGGGAAGACAC 59 82416661 82417949 CTGTACAGTGAGGTCTAAAGG 58 Novel Rattus norvegicus 81 AABR07028523.1 ENSRNOG00000060508 ENSRNOT00000091646 1 1 1 80 17 73325751 73332956 CAAATATGAGCATGGAGGCG 60 73325690 73325710 GAGGGAGCAAATTGATCTCTG 59 Novel Rattus norvegicus 81 AABR07028670.1 ENSRNOG00000053497 ENSRNOT00000084757 3 1 1 95 17 80061331 80063859 GCCCTGATGTTCAGATGAG 58 80063916 80063936 TACCAAAGAGAAGCATCAAGC 59 Novel Rattus norvegicus 81 AABR07059875.1 ENSRNOG00000053063 ENSRNOT00000091383 2 1 1 63 4 39632648 39632669 GGATACTCTGGAGTCAAATGTG 59 39631081 39631099 CAGTACGCGTTTCTCAACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008118.1 ENSRNOG00000059665 ENSRNOT00000083525 1 1 1 80 2 44266279 44272103 CAGTGACGAGCATCAACAC 59 44266217 44266238 CTTTCAATTTCTACCCTCTGCA 59 Novel Rattus norvegicus 81 AABR07071199.1 ENSRNOG00000056201 ENSRNOT00000082349 1 1 1 81 8 104376263 104377777 CCACAGTGCCATTTGTGAG 60 104376200 104376219 TGCTATTGGTCTGAGGAGAG 59 Novel Rattus norvegicus 81 AABR07071228.1 ENSRNOG00000057243 ENSRNOT00000088816 2 1 1 80 8 105666794 105667063 GCTGATAGCAAATCATGAGGA 58 105666734 105666755 GTGCATTTGTCATCAAAGTAGC 59 Novel Rattus norvegicus 81 AABR07044962.1 ENSRNOG00000056428 ENSRNOT00000089619 1 1 1 80 20 28371434 28372190 TGGTTCAGAAATTGCCTGTC 59 28372230 28372251 CACTGTAGTCTTCAAGTTCCTG 59 Novel Rattus norvegicus 81 AABR07028874.2 ENSRNOG00000061654 ENSRNOT00000088066 2 1 1 103 17 89541792 89541813 TTTACACCTGTTATACTGGCTC 58 89536072 89541730 GACCTGTCTAATTCATCAGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008309.1 ENSRNOG00000052649 ENSRNOT00000083729 1 1 1 85 2 52783572 52785021 AAGTCTCCAAGCAGAGACC 59 52785070 52785088 AGATGTCCCTTCTGAACGG 59 Novel Rattus norvegicus 81 AABR07073455.1 ENSRNOG00000055688 ENSRNOT00000089206 2 1 1 80 8 120894523 120894542 CTGGAAAGCTTTATGGTCCT 58 120894582 120897653 ACTTCACTCTTCCAATGATGTC 59 Novel Rattus norvegicus 81 AABR07071549.1 ENSRNOG00000052055 ENSRNOT00000088777 3 1 1 89 8 121583530 121583548 TTCCACAGGACGAGAAGAG 59 121583600 121586498 AAGATTCTCTGCACCTACGG 60 Novel Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 3 1 1 61 2 63732563 63734649 AATGAGACCTTTCCAGCCC 60 63734674 63734692 CCAGTGTACCCTCTGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 2 1 1 61 8 121730408 121730429 GAGACGTACACATTCAAATCAC 58 121726289 121730386 AACTTCTGGATGGCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045510.1 ENSRNOG00000056096 ENSRNOT00000078632 1 1 1 81 20 49773011 49874160 CTTCTTATGCAACAGCCCAG 59 49772949 49772967 AGTAACAGCACACGGAGTC 60 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 2 1 1 64 2 65010648 65011738 ATGAGCACACTTTCTATGGAG 58 65010604 65010623 TGACTAGGGTATGTCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.3 ENSRNOG00000056389 ENSRNOT00000079701 3 1 1 174 19 52065972 52065990 GACCCAGAGTCCTTGACAG 59 52066126 52067120 TGAGTACTGGTATCACCTTGG 59 Novel Rattus norvegicus 81 AC131521.1 ENSRNOG00000056336 ENSRNOT00000080553 2 1 1 82 2 78824479 78824498 TCTGAAACCTTTGTCATCCC 58 78822823 78824435 GTAAGTAGGTTGAAGCCCAG 58 Novel Rattus norvegicus 81 AABR07044009.1 ENSRNOG00000053641 ENSRNOT00000085494 1 1 1 68 19 52840344 52840362 ATCTGCTGAACAATTGGCA 58 52839659 52839677 CATCACTCCGAGACTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 2 1 1 66 7 135124911 135124930 ATAATTGCTTCCAGGTGGCT 60 135124959 135146084 TTTCATTGTCAGGGTGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058773.1 ENSRNOG00000055355 ENSRNOT00000082261 2 1 1 92 7 136953006 136953024 TCTCAGACAGGAAGCAGTG 59 136953076 136955293 CTGAAATTACCAGTGTTCTGACC 60 Novel Rattus norvegicus 81 AABR07044081.2 ENSRNOG00000061604 ENSRNOT00000081420 2 1 1 80 19 56544894 56546219 CAGGAGACTGAGAGCTCTG 59 56546262 56546281 TGAGGACATCAAGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07058788.4 ENSRNOG00000058206 ENSRNOT00000085794 1 1 1 80 7 137515436 137515455 GGAGAAGACTGAATCAGCCA 60 137515495 137526263 TGATCCTCTTCCATTACCTCAG 59 Novel Rattus norvegicus 81 AABR07058789.1 ENSRNOG00000057856 ENSRNOT00000078569 1 1 1 90 7 137590652 137593039 CAGTTCCTCATGTTAAGAATGG 57 137590583 137590601 AGTCAACACTGCGATTCTG 58 Novel Rattus norvegicus 81 AABR07009161.1 ENSRNOG00000056029 ENSRNOT00000079699 3 1 1 80 2 87896705 87898082 AACTTCTCCATTGGTGTTGC 59 87896644 87896663 AACAATAGCTCCTGGTCCAC 60 Novel Rattus norvegicus 81 AABR07058816.1 ENSRNOG00000061549 ENSRNOT00000088445 2 1 1 132 7 138437927 138437946 TATGAAACAGAGATGCCGCT 60 138438041 138449696 ATTGGCAGCTCCTGATCAG 60 Novel Rattus norvegicus 81 AABR07007078.2 ENSRNOG00000061164 ENSRNOT00000078143 1 1 1 80 1 279710211 279713219 CCTTCCTAATGAGAATCCGTG 58 279710151 279710170 CTTCCTGTCTTCACTTCCTG 58 Novel Rattus norvegicus 81 AABR07009634.1 ENSRNOG00000052367 ENSRNOT00000082636 1 1 1 71 2 106574306 106574324 GTCAAGAGACAGAGGCTGG 60 106570838 106570857 TCAATCAGGCCTTTCTTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009634.1 ENSRNOG00000052367 ENSRNOT00000082636 2 1 1 72 2 106574306 106574324 GTCAAGAGACAGAGGCTGG 60 106570837 106570857 ATCAATCAGGCCTTTCTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010031.1 ENSRNOG00000055532 ENSRNOT00000089323 3 1 1 81 2 121234065 121240856 GTCTTCATTATAGGCCTGTGC 59 121240899 121240917 TCCTACTGCCAAGCATCTG 60 Novel Rattus norvegicus 81 AABR07010107.2 ENSRNOG00000055621 ENSRNOT00000081435 1 1 1 61 2 123906648 123906666 CAGCTGAAAGGCTTCACAC 60 123907510 123907528 CCAGTTAAGTCTGAAGGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010121.1 ENSRNOG00000059906 ENSRNOT00000086707 3 1 1 90 2 124696883 124696901 CATCTGACTGTCTAGGGCA 59 124696955 124702410 AAGCTGCTTAATCCAACGG 59 Novel Rattus norvegicus 81 AABR07010180.1 ENSRNOG00000055930 ENSRNOT00000085419 3 1 1 83 2 127975757 127978976 TTGCAGACCATCTGTGAGG 60 127979020 127979041 CAAAGGATGAAGAACCTTCTGG 59 Novel Rattus norvegicus 81 AABR07010342.1 ENSRNOG00000053123 ENSRNOT00000077766 2 1 1 97 2 132846554 132847601 TGAAATGACAGGTTTGGAGAC 59 132847659 132847678 TGATTTGGATTCAGTTGGCT 58 Novel Rattus norvegicus 81 AABR07011145.1 ENSRNOG00000059427 ENSRNOT00000078981 2 1 1 79 2 158978148 158978166 ATTGTCAACCACTTCCCAC 58 158963682 158978108 ACCTTTACTTTCTTGTCTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011996.1 ENSRNOG00000061272 ENSRNOT00000088226 2 1 1 109 2 180878454 180880390 AATGTTTGTGGCATTGCAG 58 180880462 180880481 GTTGTTGAAACCTGAAGCAC 58 Novel Rattus norvegicus 81 AABR07012475.2 ENSRNOG00000052421 ENSRNOT00000079148 3 1 1 278 2 196587248 196587266 AAGCTCCATATTGCTTCCG 58 196588350 196588368 CAGCAATCTCTGCAGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.1 ENSRNOG00000052143 ENSRNOT00000091056 1 1 1 80 14 4064523 4064542 TGCTCCTCCATAGATCATGC 60 4064583 4064743 TGTCTTTGGATCCTGAGTAGG 59 Novel Rattus norvegicus 81 AABR07014298.1 ENSRNOG00000061590 ENSRNOT00000084570 3 1 1 81 14 7973223 7973242 AAAGAATCAGAAGCCACTGC 59 7973286 7979720 GTGAGGAAGACTGATCCGA 59 Novel Rattus norvegicus 81 AABR07013165.1 ENSRNOG00000060844 ENSRNOT00000089739 1 1 1 84 2 225801427 225803005 CCCAAGATCTCTGTGGGTG 60 225801361 225801379 CTGCAAAGCTAACATGGCT 59 Novel Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 2 1 1 88 2 233542061 233542079 CAGCTTATCTGCATGTGCG 60 233538831 233542009 TAGAGATGGGCCACAAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013689.1 ENSRNOG00000054579 ENSRNOT00000080436 1 1 1 82 2 250459676 250465082 GAAGAAAGGGAGGAGTTATATTCAG 59 250465122 250465140 TAGGCTGCCATGTAGATGC 60 Novel Rattus norvegicus 81 AABR07013743.1 ENSRNOG00000052422 ENSRNOT00000090154 2 1 1 85 2 254177921 254177941 AATAAAGAGGAGCAGGATGAC 58 254176233 254177875 TATAGCAGCTCAAATGCCAC 59 Novel Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 1 1 1 174 12 50212219 50212237 AAAGCAGCAGTGGAAAGAG 58 50212027 50212045 CTTAGGATTGGCTTTCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010672.1 ENSRNOG00000054545 ENSRNOT00000080780 1 1 1 82 2 147010504 147010522 GGAGGAGACAACAGGACTG 59 147010568 147013990 TCCTTGGTACAGAAGGTGG 59 Novel Rattus norvegicus 81 AC117889.1 ENSRNOG00000053079 ENSRNOT00000089404 2 1 1 81 10 986871 988592 TCGACAAGACAATCTGCCA 59 988637 988655 TTCAAATCCTGCACCAAGG 58 Novel Rattus norvegicus 81 AC117889.1 ENSRNOG00000053079 ENSRNOT00000089404 3 1 1 82 10 988750 989772 GGTCAGAATTCAGGTTGGC 59 989818 989836 TCTGGGACACGGTAAACTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053298 ENSRNOT00000088944 2 1 1 60 4 135196842 135196862 TGGCTAGTCTGGTATCTTCCT 60 135196883 135196902 TGTAGCTTCTAGAGGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051505 ENSRNOT00000087515 1 1 1 60 4 53467627 53467647 TGTCTCTTGTGCATCAGTAGG 60 53467587 53467610 AGAATACTGGGCATAGATGTATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044267 ENSRNOT00000069534 2 1 1 60 4 8007761 8007781 TCAGCATTTACTTCTCTGACC 58 8007802 8007821 TTTGAGTACTAACCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063649.2 ENSRNOG00000056890 ENSRNOT00000078333 1 1 1 83 6 39517611 39517631 ACTACTGTTCAGGAAGAGCTG 60 39517676 39517696 CTTTGTGCTCGATTGTCCC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059787 ENSRNOT00000077907 1 1 1 60 4 145403282 145403300 ATACAAGCTTGCTCCATCC 58 145403240 145403258 CCATTCCTGGAGATACTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0558.2 ENSRNOG00000051347 ENSRNOT00000076984 2 1 1 118 13 50696564 50696582 CCTCCTAAGCAGCTCACTG 60 50696664 50715175 GTTTCACTCTCCAACGCAG 59 Novel Rattus norvegicus 81 AABR07008513.1 ENSRNOG00000056876 ENSRNOT00000078624 3 1 1 71 2 62904469 62904490 TCAGTAAGTAAATCTGGGTGGG 60 62904522 62904540 TAGCGTCAGAATCACCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 3 2 2 81 5 77341446 77341467 AGTGCAGGGAACTATATTTGGT 60 77246987 77341408 AATGTATTCCCTCCGTCATACTC 60 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420 3 1 2 158 14 83885880 83887535 TGTCTTTCTTCTCGGCCAG 60 83885740 83885759 CTTTCTCCAGAGGAAAGCCT 60 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 2 1 3 88 6 104467547 104467565 CAAGTGGACCCGAGATCTG 60 104467617 104475047 GGAGTAGCTTCACCAGTGG 60 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000073954 2 1 4 88 5 77902272 77902290 GTAAATGGAGAGTGCAGGG 58 77901512 77902221 GTATTCCCTCCGTCAAACTC 58 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000073954 3 1 4 89 5 77902271 77902290 GTAAATGGAGAGTGCAGGGA 60 77901511 77902221 TGTATTCCCTCCGTCAAACTC 60 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 1 2 4 87 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77749598 77902221 GTATTCCCTCCGTCATACTC 57 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056 3 1 2 92 5 77340707 77368034 TTTGTTGAGTATGACGGAGG 58 77340634 77340654 CCCGTTCTTGAAATTAACGAG 58 Novel Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 2 2 2 80 4 29561561 29561579 CTCTAGAAAGAACCCTGCC 57 29561621 29562210 TCAATCCAGTAGTAATCGCTC 57 Novel Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 2 1 1 60 1 37989878 37989897 TTACAGCAACCTTGTGTTCC 59 37988399 37988419 CAGAAACGTCACGAGATATGG 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000046602 ENSRNOT00000075002 3 1 1 80 1 214685191 214685210 TTATTGTGCACCATGAGACC 58 214685252 214685693 TCTCCAACACTATCTCCACC 59 Novel Rattus norvegicus 81 AABR07059925.1 ENSRNOG00000052702 ENSRNOT00000090618 2 1 1 60 4 43915818 43915839 CATGAAAGACGATATCACTGGG 59 43915859 43915878 GGCTTTCTTGTTGTCATCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 2 2 3 82 X 73665294 73665312 CCTCCTAACTTTGCCTCTC 57 73664181 73665248 CCATCAGAACCTTGTGGTC 58 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 1 2 3 81 X 73665294 73665312 CCTCCTAACTTTGCCTCTC 57 73659835 73665249 CATCAGAACCTTGTGGTCC 58 Novel Rattus norvegicus 81 AABR07061448.1 ENSRNOG00000054289 ENSRNOT00000079490 2 1 1 60 4 125326459 125326479 GCTCAACTACACAATGTAAGG 57 125326418 125326436 GTGACGAAGGACTCTTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847 3 1 2 80 16 31274705 31274725 ACATTTCATAGAGAAGGCCCA 59 31273647 31274406 GGTATGGTCTGGGTGATGAG 60 Novel Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000056700 2 1 4 135 X 73461232 73463284 GAAGGTGACATTAACAAGACTC 57 73463378 73464073 TGTTGATCTTCTTCCTTTCCC 58 Novel Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079511 2 1 2 80 4 113979349 113979367 CACTCATGTGGAAGGACAC 58 113979525 113983110 CATCTCCATACAGTAGAAACACAG 59 Novel Rattus norvegicus 81 ENSRNOG00000031519 ENSRNOT00000048715 1 1 1 60 17 81558479 81558497 GTATGACTCCACCCATGAC 57 81558437 81558456 GTCAAGCTTCCCATTGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snopsi28S-3327 ENSRNOG00000056898 ENSRNOT00000080118 2 1 1 66 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490246 150490265 AAATTGTTTCTCTGGGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060400 ENSRNOT00000085105 3 1 1 60 5 88341882 88341900 AAGTGTCAATAGGTGGCAG 58 88341840 88341861 TTCACAAGTCAGAACACTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057562 ENSRNOT00000088093 2 1 1 60 13 89884241 89884262 CAGATCGTATAAATCTTTCGCC 58 89884202 89884222 ACTCAGAATTGTTCCTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017198.2 ENSRNOG00000056859 ENSRNOT00000077333 1 1 1 60 15 17330206 17330224 AGTCTGGAATGGGATTTGG 57 17330248 17330266 CAACATCAGCATCACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060960 ENSRNOT00000085053 1 1 1 60 15 20186331 20186349 CCAAGGCGCAATTATTGCT 60 20186289 20186310 TATTTGACTCTGAAGCAGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061207 ENSRNOT00000078711 2 1 1 60 X 102150558 102150578 CTTAAAGCTCAGTGGAAGAGG 59 102150599 102150618 TTGACCAAAGACTGGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061627 ENSRNOT00000077801 1 1 1 60 18 18835605 18835624 ATAGGTGTGGTTACTGTGTC 57 18835647 18835665 ACATGGCCTATCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 1 1 1 65 2 2510220 2510241 TCCAACTACTGGAACTTATCAG 57 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 1 1 1 64 4 164253017 164253035 TAAGGAGACTCAAAGGCCC 59 164250686 164250704 TAGCAATCACAGTGAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 1 1 1 63 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138169 120138188 TTCCTCTCCTGGAGATACAG 58 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052 1 1 6 80 10 74883446 74883465 ATGAGAACTACAGGGCACAG 60 74883508 74883716 TTCTGGATCTGTCCTTGCG 60 Novel Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 2 1 1 89 2 209779298 209779316 CTTGGATGACAGTGCAGTG 59 209779370 209779388 TCTTTCCTTCACGTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 1 1 1 60 7 380942 380960 CAGTTCAGCAACCTCTACG 58 381676 381694 GGAGATGATGCCATTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 1 1 1 63 1 214009830 214009848 AAGGAACTCAGGACACTGC 60 214009783 214009801 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 1 1 1 60 18 7344106 7344124 GGTCCAAATAAAGCAGCCA 58 7348993 7349015 TTGATCTCTTGAGACTAGGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 2 1 1 60 14 71504972 71504990 GACCAGAAGCTTACACGAG 58 71516474 71516493 TGTTTCCACACGGAAATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 1 1 1 87 5 38572312 38572332 CTTACACAGTGAACTACTGGA 57 38567803 38567821 CCATTGTTCCATCCCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453 3 1 2 80 10 93153031 93153051 AAAGTCTGGGAATCAAACTCC 58 93153093 93156846 CAGCCTTCCCACTAGAGTC 59 Novel Rattus norvegicus 81 AABR07016559.1 ENSRNOG00000059123 ENSRNOT00000086067 3 1 1 60 14 103887430 103887449 TTCTCCTCTGGATCCTTCAG 58 103887141 103887161 TGAGCCAAGGATATTCAAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 2 1 1 61 1 24073419 24073437 CCTAGGCAGACTCAGAGAC 59 24072674 24072692 GTCCTCCAGATGTCAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 3 1 1 68 4 161342591 161342611 CAAAGTTGTTTGACCAAGCAC 59 161387708 161387726 AATACTGCTCTGAGCCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 3 1 2 60 15 20340588 20340607 CGTTAATTCTCCTCAGGCAG 59 20340924 20340944 TACAGTTGGTGTCTAAACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085220 1 1 3 134 20 56198415 56198436 ATCATGCCCTGCTTTAATTAGG 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 3 1 1 65 6 32414981 32415005 CTCTACTTATAAGCTACATAGTGCC 59 32359952 32359971 TAAGCAAAGGCAGGAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 1 1 1 108 6 38807479 38807498 GGAGCTTCAACCACAAAGAC 60 38806207 38806225 TAGAGCAACAGAGCCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 3 2 2 81 1 71223096 71223116 ATATCCATCCTAGAGCAAGGT 58 71207961 71223053 CAGACTCCAATGCTGAACC 59 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 3 1 1 61 6 45023526 45023544 AGAGACACATGGATCTGCA 58 45024516 45024534 AATGTCGGCCTGGATAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 2 2 2 88 6 64609021 64609039 AGAGGTGACAGTGCTTGAG 59 64593178 64608969 GTTGTGTCTTCCAGTGCTC 59 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 2 1 1 90 15 97420705 97420726 CTAGAAACAATGGCTTTCTCAG 58 97421813 97421832 TTACTTACTGGCTTGCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 1 1 1 60 3 22637555 22637575 TGTAAACACAGATCCTGACAC 58 22636549 22636570 AGCAAACTGTCTTCACATACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 3 1 1 60 3 22637555 22637576 CTGTAAACACAGATCCTGACAC 59 22636550 22636570 GCAAACTGTCTTCACATACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 1 1 1 69 13 24520513 24520531 AATTCACCACCATCTCCAG 57 24516756 24516776 AGGATTCCATTCATCTTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 1 1 1 60 3 33949862 33949883 GAGCATCTAAGTGTTTCTTGGG 59 33949902 33949922 TCATCCTGAACCTTATCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000086332 3 1 2 81 9 604415 604438 CCCTTAGGTTCATTTATGAGACTG 59 604263 604375 AAGCCATTGATGATGCTGC 59 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853 3 2 3 85 6 125302281 125302302 TGCCTTCTATATTGTGAGATGG 58 125298541 125302236 GCCTTTCATTCCATATCCCA 58 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 1 2 2 62 1 131386634 131386656 CCCGTAGAATACTGTATAGTGAC 58 131385493 131385511 GAAGAAGCCTCCATCTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 1 1 2 115 12 3807979 3808637 TACTCCTCATGCAGATGCC 59 3808716 3808734 GATACAGAGTCCCAGCTCG 59 Novel Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 3 1 1 78 6 141112600 141112621 GACTGCTAAACATGAAGTTGAG 58 141112437 141112456 AGCTGTACTTCACACTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 2 1 1 75 6 142405367 142405386 ATGTTGGTCCTGAAGTTGGT 60 142405206 142405224 CAGACTCAACAAGCTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 3 1 1 60 3 90974784 90974805 AGGCTGTACCTATTTGTTTCTG 59 90965788 90965808 TTCGAGGCATTTAGCATAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 2 1 1 63 12 9332088 9332106 CCTCTTCGAGTCTCCTCCT 60 9332604 9332625 TCACTTCGGTTCTTCAATTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776 3 1 2 81 6 143757078 143757096 CTGTGAACTCACTGGTGTG 58 143749808 143757033 GGGACAAGACATATGCAGG 58 Novel Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 2 1 1 60 13 108021463 108021482 GCATGGTATACAGTTCCCTC 58 108032595 108032617 GACATATTCACATAATCCTGCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 2 1 1 68 16 78903739 78903758 GAGGTGGAATTTAGGTCCTG 58 78880271 78880290 TGTCTCCTCTGTGTAAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 1 1 1 64 1 244877701 244877719 AAGGAAAGGAGGCCATCAG 59 244907914 244907932 CTCTAAGTGCACTGGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000084598 3 1 2 81 16 87443359 87470789 CACACCTGAGATTTGCCTC 59 87470834 87470852 CCTAAGGCTCTCGTACCTC 59 Novel Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 3 1 1 62 X 96469348 96469367 CCAGTCAGGTAGTTCATCCA 59 96466459 96466478 CATGGACCTGCTGATTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 2 1 1 87 7 24031881 24031899 CTTGATTCACGTGGGTCCT 60 24034093 24034112 TAAAGGCTACCACAGTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 1 1 1 66 7 50073490 50073508 TATATGCTGCCCTGAGTGG 59 50072563 50072584 CGTAATAATGCTCAGCTCTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000087743 1 1 3 80 8 23492896 23492914 TTACTGCTTGGCAGGAGTC 60 23492956 23493483 CATCTAAACTGCTGTGGTCTC 59 Novel Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 3 1 1 62 1 272859338 272859359 CTGTGGAAAGAATGATAGATGC 57 272858843 272858862 CTTTCGTTCCATGATTCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 1 1 1 60 19 20784069 20784089 GTCAGGCAAGATACTACTGCT 60 20774725 20774745 CATCCATCTGGGAAATTTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 2 1 1 81 7 62236166 62236185 TTCTTCCTTCCTCATGGACG 60 62236992 62237010 CTTCAGTCTTGAGCTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 1 1 1 60 7 63270913 63270931 CTGGAGTCAGCAGAGAAGG 60 63270871 63270889 TTAGCATCCACCGTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 1 2 3 80 10 15261 15279 CAAGCTGAAACCAGAAACC 57 13174 15219 AAACTTCTCCTTCACAGACTC 58 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 3 2 3 81 10 15355 16175 CTACAAGCAGAGGGCAGAG 60 15292 15314 CTCCAATTCAGCTTCATATTCCC 60 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 1 1 1 60 10 1581169 1581187 GGCTACATCCAGATGACAC 58 1582477 1582497 TCCACAGAAAGAATCCTAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 2 1 1 60 20 6394722 6394740 GTAGGGCAGATGGAGACTG 59 6396009 6396027 TCCACAGTTTCCAGAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 3 2 2 81 17 62682428 62682446 ATTTAGCTCCCAGTCACGA 58 62681973 62682383 AAAGTCACGTTTCGAGCTC 59 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 3 1 1 60 8 81635484 81635508 GATGGGATCAGAAATTACTAGATGC 60 81490673 81490691 TTGTCGGTTACTGAATGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 3 1 1 62 2 38743654 38743672 CAATGCTTGGCTCCTTCTG 59 38745791 38745811 ATGTCTTTCAAGGACAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 1 1 1 60 17 79978367 79978387 CTAGACAACATGGAGACTTCG 58 79964656 79964674 GCAGCTGCTTACTGATCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 1 1 1 60 20 23359528 23359546 TCAACCAACACCTGTCCAG 60 23351284 23351302 TCTGGTCTTTGCTACACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 2 2 2 80 4 68424644 68424665 GAGATTAAAGAACTCCACAGCA 59 68424703 68425216 TTCATTCATGTCAATCCACAGG 59 Novel Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 1 1 1 205 8 124166661 124166679 TCGTTCGGTTCATCTCCAC 60 124167025 124167043 GATCACTTACCCAGCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 1 1 1 68 7 135124932 135124950 GCCGCTTTATTACTCTGGG 58 135146088 135146107 AGGAATAATTGTGATGCCGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 3 2 2 61 2 156405563 156405582 CTAGGAGGACAGGAACAACC 60 156399635 156399653 GGTGATGTGGTCCCATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 Mt-atp6 ENSRNOG00000031979 ENSRNOT00000046108 1 1 1 60 MT 8120 8141 TGAGCCCTAATAATTGTATCCC 58 8162 8180 GAAGCCCTAGAAGGTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd4l ENSRNOG00000031053 ENSRNOT00000044582 2 1 1 60 MT 10035 10055 TCCATAACCATCCCAATTACC 58 10076 10095 CTAAACCTACTGCTGCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd5 ENSRNOG00000029971 ENSRNOT00000048767 3 1 1 60 MT 12419 12438 TCATCCATGACTCCCATCAG 59 12461 12479 TGAGTGTAGTAGGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf180 ENSRNOG00000043329 ENSRNOT00000066069 1 1 1 80 2 35850673 35853299 AGAAGCAGGGTAAATACTCAG 57 35766318 35766337 CAGGCTCATCATCTGTACTC 58 NA Rattus norvegicus 81 Nmnat1 ENSRNOG00000015962 ENSRNOT00000048914 3 1 1 81 5 166419352 166419371 TAACCCAATCACCAACATGC 59 166417258 166419314 GATAACTTTGTATTCTCCTGTAGCG 60 NA Rattus norvegicus 81 Pomgnt1 ENSRNOG00000023455 ENSRNOT00000035312 1 1 1 80 5 135008685 135008704 AGTTGATCCTAGACACTCGG 59 135008747 135008893 CTAGGGCCTCATCGTAGTC 59 NA Rattus norvegicus 81 Errfi1 ENSRNOG00000058186 ENSRNOT00000085315 1 1 1 80 5 167962670 167963500 CTAACAACCCTCGGATGTG 58 167963544 167963562 TGACTTTGGAGATGGACCA 58 NA Rattus norvegicus 81 Sypl2 ENSRNOG00000019780 ENSRNOT00000026883 1 1 1 81 2 211009024 211010241 CCCTTCAGGTTGTACCAGG 60 211008961 211008979 CTCCCATGAGGTTCATGGT 59 NA Rattus norvegicus 81 Cysltr1 ENSRNOG00000037845 ENSRNOT00000042799 1 1 1 60 X 77675222 77675244 GCAATAGCTTTGTCCTCTATGTC 60 77675184 77675203 ACTTGGAAGGCTGATTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 3 3 3 80 3 3828460 3829616 CATCTATAAAGCAGCTGGTGTC 59 3828401 3828425 CAGTAATTCTGTCGATAGACTTGAG 59 NA Rattus norvegicus 81 Smim11 ENSRNOG00000039877 ENSRNOT00000061235 3 1 1 118 11 32454834 32458493 TGAACTGGAAGGTTCTCGA 58 32458575 32458593 TCCTTCCAAGCTTCTCCTC 59 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181,ENSRNOT00000076134 1 2 2 85 3 37938598 37938616 GATGTGGGATATTGGTGGC 58 37936936 37938552 CCACCACAACTATTACAAACTC 57 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847,ENSRNOT00000080677 3 2 2 80 2 56112342 56112364 AGATCATATTACCCATGACCCTC 59 56112049 56112302 ACTTCTCCTTCACCCACTG 59 NA Rattus norvegicus 81 Ttc3 ENSRNOG00000001682 ENSRNOT00000065600 1 1 1 80 11 34612715 34612738 TATCTGTACTCCTGACTTTACCAC 60 34612775 34613073 TTATATTGCATACCCACGCCT 60 NA Rattus norvegicus 81 Tnf ENSRNOG00000055156 ENSRNOT00000079677 3 1 1 93 20 5191734 5191752 CTTCTCATTCCTGCTCGTG 58 5191160 5191678 ATTTGGGAACTTCTCCTCCT 58 NA Rattus norvegicus 81 Stoml1 ENSRNOG00000008530 ENSRNOT00000011383 1 1 1 89 8 63038834 63040465 CTCTGAAGATTGTGCCCAC 59 63040518 63040536 AGAGAAGAACCATGCCAGG 59 NA Rattus norvegicus 81 Gulo ENSRNOG00000016648 ENSRNOT00000022702 2 1 1 80 15 42672722 42674507 AACATCATTATGTACAGGCCC 58 42672662 42672684 CTTCTTCATGATGGTCTCATAGG 59 NA Rattus norvegicus 81 Amy1a ENSRNOG00000033529 ENSRNOT00000022496 2 1 1 80 2 216436354 216436372 AACAGGGACTTTCCTGGAG 59 216436291 216436310 CTCAATGCCTCGACTTCCA 60 NA Rattus norvegicus 81 Ncr3 ENSRNOG00000000854 ENSRNOT00000001139 3 1 1 86 20 5175238 5175256 ATCTACGTGTGCAGAGTGG 60 5175306 5175427 TTGAGGAGGCTCTTTCTCC 59 NA Rattus norvegicus 81 Olr1533 ENSRNOG00000054480 ENSRNOT00000046587 2 1 1 60 11 45616369 45616392 TCAGAGGAATAACAGATCTTCCAG 60 45616332 45616350 ATGAGGAAGAACACCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbk ENSRNOG00000015308 ENSRNOT00000064306 1 1 1 81 15 42495644 42495662 CAAAGACAGTGGAAGTCCT 57 42495706 42496850 ATGCAGATACTTTAGCCCTC 57 NA Rattus norvegicus 81 Lhfpl5 ENSRNOG00000022283 ENSRNOT00000036999 2 1 1 85 20 5819728 5819746 CTCCTTCTTGGCTTTCGTG 59 5819795 5822840 TTCAGACTTCCTCGTTCCC 59 NA Rattus norvegicus 81 Pear1 ENSRNOG00000014243 ENSRNOT00000019502 3 1 1 80 2 187116929 187117113 ATTACGTCATGCCAGATGTC 58 187116868 187116887 GAGAACACTGAGACAGTGTG 58 NA Rattus norvegicus 81 Rn60_1_1340.1 ENSRNOG00000051108 ENSRNOT00000077007 3 1 1 60 1 132891871 132891890 CAGAACCCATACCCTGACTG 60 132891913 132891931 ACGTGAGAAGACCTAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565653 ENSRNOG00000007803 ENSRNOT00000010249 3 1 1 60 8 119285696 119285716 ACAAGACCACTATCTTTACGG 58 119285737 119285756 ATGTGCTTCAGTTCGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk4 ENSRNOG00000001618 ENSRNOT00000002206 3 1 1 95 11 38265721 38265740 AACTTCCTGCATTGCATGTC 60 38262145 38265668 GTCAGAAATCTTGACATGGTAGTG 60 NA Rattus norvegicus 81 Adrbk1 ENSRNOG00000018985 ENSRNOT00000025847 1 1 1 80 1 219537923 219538023 TTCTTACAGAAGTACCCTCCTC 59 219537864 219537883 AAAGGAGCCAATGTCAAAGG 59 NA Rattus norvegicus 81 Olr500 ENSRNOG00000056110 ENSRNOT00000084704 2 1 1 60 3 73736064 73736088 CCCATGTATTTCTTTCTTAGACACC 60 73736028 73736047 CCACAGCTGTTGAATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem30c ENSRNOG00000001644 ENSRNOT00000002241 1 1 1 81 11 45345438 45345461 CGGTTTCTATCAGAATCTCTATCG 59 45345495 45346384 TGTAGTATCCCAAATATCCTTACCC 60 NA Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 1 2 2 83 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356882 6357486 GATAGAAATCTGTTAGGCTGGTC 59 NA Rattus norvegicus 81 RGD1565472 ENSRNOG00000046991 ENSRNOT00000072806 1 1 1 87 11 39766884 39767638 CATCCTCACTGTCCCACAG 60 39766815 39766833 CTTATGCTGTTGCTGCTGG 60 NA Rattus norvegicus 81 Adam2 ENSRNOG00000017027 ENSRNOT00000066478 2 1 1 80 15 42746907 42746925 TTGCCTCCCAACTTTAGAG 57 42741844 42746866 GCAGATATTCTGAAACTTCTGC 58 NA Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209,ENSRNOT00000080681 2 2 2 80 11 38383315 38385764 AAGGAAGCTCAGACTCTACAG 59 38383255 38383274 TAGTTCATGAGCCCTTGGAG 59 NA Rattus norvegicus 81 Rab32 ENSRNOG00000014258 ENSRNOT00000019121 1 1 1 80 1 4644508 4644526 AGTCCTTCCCAGATGAACC 59 4640055 4644468 GTTTATGTTATCCTTGGCAGAGG 60 NA Rattus norvegicus 81 LOC100360446 ENSRNOG00000019884 ENSRNOT00000026979 2 1 1 60 1 199654661 199654683 CAGCTCTAATCTCACTAAACACC 59 199654623 199654641 CATGCACTTATGAGGACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000077246 2 1 2 98 1 201968897 201981136 CAGTTGTCAGGAGATATAACAGAC 59 201968822 201968840 TTTGACGAAGTCCAAAGGC 59 NA InUTR Rattus norvegicus 81 Ccr1 ENSRNOG00000006715 ENSRNOT00000008772 3 1 1 128 8 132998201 133001928 TGGAAACACAGACTCATTGTC 59 132998093 132998113 AGTCATATTCTGTGGTTGTGG 58 NA InUTR Rattus norvegicus 81 Ppp1r12c ENSRNOG00000053828 ENSRNOT00000086122 1 1 1 80 1 72921135 72922063 AGAAACAGGAGGACCTTCG 59 72922107 72922125 GCTTGCTGTTTGAAGGGAC 60 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453,ENSRNOT00000011317 2 2 2 80 X 1762829 1764399 GAAGCCAATCAGCATTCCC 59 1762767 1762786 CTCATTGATCTTGGGCTTGG 59 NA Rattus norvegicus 81 Ak8 ENSRNOG00000012761 ENSRNOT00000017029 3 1 1 81 3 7323294 7323312 CTGAAGGAAGCTATGGCAG 58 7323357 7341631 TGTCTGGAACTGTCATCCT 58 NA Rattus norvegicus 81 Itpr3 ENSRNOG00000052795 ENSRNOT00000090925 1 1 1 80 20 5690811 5690829 GTTTGTGGAGGTCTTTCCC 58 5690872 5691232 TTCATGTTGGCAGTAGAGGA 59 NA Rattus norvegicus 81 LOC100909913 ENSRNOG00000002960 ENSRNOT00000003984 3 1 1 82 X 6806712 6814394 AAATGTAGCTCAAAGATGGTGC 60 6814437 6814455 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474,ENSRNOT00000067506 1 2 2 80 4 179427580 179427695 CAGAGTGAACCCACTTCTG 58 179428007 179428026 CCAGTCACATTTAAGTCCCA 58 NA Rattus norvegicus 81 Gys1 ENSRNOG00000020812 ENSRNOT00000028271 3 1 1 80 1 101432505 101432523 GCCCATGTCTTCACTACAG 58 101432564 101434140 GGTCACAATATCTGGTTTCCTC 59 NA Rattus norvegicus 81 Map3k11 ENSRNOG00000020773 ENSRNOT00000028185 2 1 1 80 1 221044283 221048607 AAGTCCAACAACATTCTGCT 58 221048647 221048668 GCCAAAGTCAGTAATCTTTAGG 57 NA Rattus norvegicus 81 Cd19 ENSRNOG00000018311 ENSRNOT00000055027 1 1 1 80 1 197817834 197817970 GAGACATGAAACAGGACTGG 58 197817773 197817794 TTCTCATAGAATTCAGAGCCCT 59 NA Rattus norvegicus 81 Dbt ENSRNOG00000015029 ENSRNOT00000020267 2 1 1 81 2 219587915 219588927 CACCTACAAGGCCTCTCAC 60 219588971 219588990 CTGAACGTTCTTCACGTTGG 60 NA Rattus norvegicus 81 Prss48 ENSRNOG00000024208 ENSRNOT00000046286 2 1 1 80 2 185298186 185298889 AAATCAGGAAGGTCATTACCC 58 185298126 185298145 TACAGTTGTTCACATGCCTC 58 NA Rattus norvegicus 81 LOC691368 ENSRNOG00000045847 ENSRNOT00000051827 1 1 1 60 3 102457226 102457247 TGTGTCTTCCAGATATTTGTCC 58 102457266 102457286 CTACCAGCAATACCATCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942,ENSRNOT00000024018 1 2 2 80 1 219176689 219177012 TTTCTTCCACTTGAGCTTCG 59 219177054 219177073 GTGTGGTTCAGGTCATACAG 58 NA Rattus norvegicus 81 Cct3 ENSRNOG00000019090 ENSRNOT00000025824 2 1 1 80 2 187692917 187692936 TGAAAGAGCTGGGTATTTGG 58 187692979 187693305 GAAGCAGAACTGCAGTCTC 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 3 2 2 94 X 31130160 31130178 TTGCAAACTCTTGGAAGGC 59 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Arl13b ENSRNOG00000047194 ENSRNOT00000074108 1 1 1 80 7 1133019 1133037 TACAAGGAGGCACTGTCAC 59 1131946 1132979 CTTACTGTTATCACCTGGTTCTG 59 NA Rattus norvegicus 81 Tlr8 ENSRNOG00000045992 ENSRNOT00000073535 3 1 1 60 X 28539264 28539282 AACCTTCCAGGGATCTCAG 58 28559571 28559589 GTCAGAATCCACGACTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cyp2r1 ENSRNOG00000011367 ENSRNOT00000067609 1 1 1 80 1 184095572 184095590 CTGAGCGATTTCTGGACAG 58 184094280 184095530 GACAGTGTCTTCTCCCTAGAG 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000000158 1 1 6 89 17 84487041 84487059 GGTTTGCAAGATGGCTCTC 59 84485862 84486888 ATCAGGGATCTGCTGACTG 59 NA Rattus norvegicus 81 Olr1118 ENSRNOG00000030856 ENSRNOT00000046875 2 1 1 60 8 17860254 17860274 CCTTATCTTCAGCTTGTTCCT 58 17860214 17860236 GATGAGCAGATTTCCTAGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csprs ENSRNOG00000017256 ENSRNOT00000023184 1 1 1 60 9 92565968 92565986 CCTCGCCTTTCCTTTATCC 58 92566008 92566028 CTTCCCTTCTCGGTATATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363782 ENSRNOG00000050510 ENSRNOT00000042711 2 1 1 60 1 220482417 220482437 AACTACAGATTTGGGACACAG 58 220482377 220482397 TAGTAGCTGGAAGTGATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt3 ENSRNOG00000061176 ENSRNOT00000083169 2 1 1 83 20 7160498 7160516 GAAGCACAGGACGTATGTG 59 7157250 7160452 CTCTTCCTTCCGATGTTCAC 58 NA Rattus norvegicus 81 Umod ENSRNOG00000015557 ENSRNOT00000021027 3 1 1 80 1 189194744 189194764 ACTTTGAATGCTCTTACCCTC 58 189192884 189194703 TGATGTTCAAGGCACTAACC 58 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076,ENSRNOT00000023605 2 2 3 103 2 189437843 189437954 AGTATGAAGAGGTGGCTCG 59 189439296 189439314 CTCCTCCAGCTCAGAACAC 60 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220,ENSRNOT00000002719 2 2 2 80 11 51060464 51060483 TTCATCCCATCCTGTTTCCC 60 51057589 51060424 CCATTATCACAAGACCGAACAG 60 NA Rattus norvegicus 81 Cdc23 ENSRNOG00000024241 ENSRNOT00000037888 3 1 1 80 18 27449353 27452005 CCTCTTACAGAGGAGGATGC 59 27449292 27449312 CCGGTCATACTCTTTAACGTC 59 NA Rattus norvegicus 81 B3gnt4 ENSRNOG00000008544 ENSRNOT00000011286 2 1 1 60 12 38504044 38504062 GTGCTTGAGTTCTTGGAGG 59 38504002 38504020 GGATGACATCTCCCACCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt4 ENSRNOG00000008544 ENSRNOT00000011286 3 1 1 60 12 38504485 38504505 TAACAGTTGTTAACACCTCCC 58 38504445 38504465 CGATAGGTTAAGAAGAGGCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif2b3 ENSRNOG00000018375 ENSRNOT00000024841 2 1 1 80 5 135929002 135929021 TCATGAAGGAAGGACTTTGC 58 135929064 135931300 ACAGCAATTTGGGTACCTG 58 NA Rattus norvegicus 81 Btbd1 ENSRNOG00000019529 ENSRNOT00000026595 1 1 1 80 1 143611949 143611969 AGGGTCATGTTCAAAGAACCT 60 143611371 143611908 AGAATCTGGACCCTTGAGTG 59 NA Rattus norvegicus 81 Tdg ENSRNOG00000027124 ENSRNOT00000034213 1 1 1 80 7 27199409 27199427 AATACGGCATCGGATTCAC 58 27199188 27199369 CTTCCCGGAATTCTTTACTAGAC 59 NA Rattus norvegicus 81 Scamp2 ENSRNOG00000019136 ENSRNOT00000066923 1 1 1 80 8 62360088 62360686 TATCTGTGGATGTTGCATTCAG 59 62360727 62360745 ATTAGCTGCGTCACTTGTG 59 NA Rattus norvegicus 81 Flrt1 ENSRNOG00000022428 ENSRNOT00000030625 3 1 1 60 1 222348848 222348867 CCAAGACATTGGTCATCCAG 59 222348807 222348827 TTCCACGTGATTCGGATAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmym5 ENSRNOG00000029220 ENSRNOT00000047731 1 1 1 80 15 37056266 37056287 CCGGGTAGGATTGATATTACAG 58 37050115 37056227 CTGGGAGATACAAGAATCAGG 58 NA Rattus norvegicus 81 Snx15 ENSRNOG00000021007 ENSRNOT00000028511 2 1 1 80 1 221496061 221496079 CACTACACAGTTTCGGACC 58 221491468 221496020 CTTCTTTGAGATGAACTGAGCA 59 NA Rattus norvegicus 81 Taf7 ENSRNOG00000020024 ENSRNOT00000027125 3 1 1 87 18 30781121 30781139 AACTGGAAGGTAGACGCAC 60 30780675 30781070 AGTTCCAGCTCAGTTCACC 60 NA InUTR Rattus norvegicus 81 Lmcd1 ENSRNOG00000005690 ENSRNOT00000007523 1 1 1 80 4 144251016 144251951 GTGACGAGATCATCTTCTCAG 58 144251993 144252011 AGCCCTCACAAATGAAGTG 58 NA Rattus norvegicus 81 Olr376 ENSRNOG00000013192 ENSRNOT00000017604 2 1 1 60 1 230629802 230629821 CACAGACAAGATTGGTGCAG 60 230629842 230629862 GATGAAAGGGTTCAACATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152,ENSRNOT00000048417 1 2 2 80 11 46184987 46185006 GATGCAGCGAGTATTCAGAG 59 46185046 46191192 ATAAGATCTCCATCCTCATCCT 58 NA Rattus norvegicus 81 Kctd10 ENSRNOG00000047896 ENSRNOT00000073019 1 1 1 91 12 48005835 48006924 CTACACCAGCAATTCCGAC 59 48006979 48006997 TTATGAACAGGACCCTCCC 58 NA Rattus norvegicus 81 Cecr5 ENSRNOG00000011338 ENSRNOT00000015090 1 1 1 80 4 153048392 153048410 AGAGGAAGTCATCAGGCAG 59 153048171 153048352 GGGTTATCACCTATAGCATACAG 58 NA Rattus norvegicus 81 Psbpc2 ENSRNOG00000020301 ENSRNOT00000027498 1 1 1 85 1 225690833 225692487 CTATGAAGCTAATGGCCAGAC 59 225692531 225692552 CCTCAGGGTTTAGTAAGAAGGT 59 NA Rattus norvegicus 81 AC126148.3 ENSRNOG00000060849 ENSRNOT00000083585 2 1 1 80 1 222521511 222521530 GTCGAACTAGTGTGATGGAC 58 222521572 222521680 CCTCTTCTAGCTCATCACTG 57 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 1 2 5 80 1 87656310 87656331 TAATTTCACTACTGGAGCAAGG 58 87656369 87656515 CATTTACAGACAGCAAATCTGG 58 NA Rattus norvegicus 81 Mir27b ENSRNOG00000035576 ENSRNOT00000053699 3 1 1 60 17 823489 823509 TGATTGGTGAACAGTGATTGG 59 823530 823549 CTTCAGGTGCAGAACTTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146,ENSRNOT00000085079 1 2 2 118 X 14910102 14910671 TATATGCAAGGCCTTCCAG 57 14910002 14910023 CAGTCATTCTGATGTAGTTCCT 58 NA Rattus norvegicus 81 AC109737.1 ENSRNOG00000014312 ENSRNOT00000064892 2 1 1 81 4 70829204 70829222 ACAACTGGTCAGAGGACTC 59 70829267 70829783 GTGATTCCACAGTCTGCTC 58 NA Rattus norvegicus 81 Gas2l1 ENSRNOG00000009040 ENSRNOT00000065135 1 1 1 80 14 85315338 85315437 CATCTTTGTGAGGGTGCTG 59 85315276 85315295 TTGTCTAGGTAGTGCTCCAG 59 NA Rattus norvegicus 81 AABR07036648.2 ENSRNOG00000050234 ENSRNOT00000072562 1 1 1 60 12 52630637 52630656 CTATCGCCAAGTTGCTTCTG 59 52630677 52630697 CGGCACCTTAAAGTAGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phex ENSRNOG00000023440 ENSRNOT00000010970 2 1 1 80 X 40624437 40624457 AAACCCGCAAGTATTTAGCAC 60 40624497 40656058 TTGGGTTTGTAAACCACTCTG 59 NA Rattus norvegicus 81 AABR07049783.3 ENSRNOG00000060798 ENSRNOT00000071106 2 1 1 81 5 137738862 137738880 TATGACAGGTACATCGCCA 58 137738798 137738818 TTGTAACCATCTTGGCACAC 59 NA Rattus norvegicus 81 Mir23b ENSRNOG00000035467 ENSRNOT00000053590 1 1 1 61 17 823249 823267 TGGCATGCTGATTTGTGAC 59 823292 823310 CATGGTTGCGTGGTAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a5 ENSRNOG00000011616 ENSRNOT00000015733 2 1 1 80 4 9857467 9857489 CACACTGTCATTCTAGACTTCAC 59 9857529 9858058 CTCTTTCACAATCCCAGCC 59 NA Rattus norvegicus 81 Syt12 ENSRNOG00000019306 ENSRNOT00000026152 2 1 1 80 1 219695935 219695953 CTGAAGCTGTCTGTTCTGG 58 219694331 219695891 ATCAGCAGCCTTATTCTGG 57 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000053241 ENSRNOT00000073787 3 1 1 60 3 73652786 73652804 ACAGCCCAAATCTAGTCAC 57 73652744 73652763 CAAGGTGTAGAACACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr2 ENSRNOG00000009822 ENSRNOT00000013025 1 1 1 81 2 182843264 182846025 AGGTCTCCAGGTCAAATCTC 59 182843202 182843221 CCTTGAGAGGCCTATCACAG 60 NA InUTR Rattus norvegicus 81 Clptm1l ENSRNOG00000016923 ENSRNOT00000023211 2 1 1 80 1 32292309 32292328 GGGAAGACAGTTCACTACCT 59 32290064 32292268 CCGATTTATCACCATCAGGTC 59 NA Rattus norvegicus 81 Olr354 ENSRNOG00000061455 ENSRNOT00000075730 3 1 1 60 1 230031370 230031391 GGAATCTTGCAATCCTCTATCC 59 230031410 230031430 TGGAATGACAGAAGGAAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erp27 ENSRNOG00000005787 ENSRNOT00000055691 3 1 1 80 4 170910413 170910431 ACCATTCTGAGGTCCTGAC 59 170901926 170910375 GTAGCTGCTTATTATCTACCAATCG 60 NA Rattus norvegicus 81 Fndc4 ENSRNOG00000051056 ENSRNOT00000076105 2 1 1 67 6 26387992 26388010 CTGAACAGAGTCCTCAGGG 59 26388263 26388281 AATGGTGTTGATGGATGGG 58 NA DesignNoJunction Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 2 2 2 80 1 167461706 167461725 AACATCCACAAGCTGATGGA 60 167461766 167489720 GAGGTCTTCCCTTAGGAACTC 59 NA Rattus norvegicus 81 RGD1559904 ENSRNOG00000014664 ENSRNOT00000061385 1 1 1 80 5 25102799 25102819 CTTCTCTGGACTCATACTCCT 58 25102860 25103390 TCATGTGGCTCAATAACCTG 58 NA Rattus norvegicus 81 Rmdn2 ENSRNOG00000006082 ENSRNOT00000008045 2 1 1 82 6 2256212 2256898 GACCACAAAGAGAAGTTTAGTG 57 2256937 2256959 GTAGATAGGTCATACATGTCTCC 58 NA Rattus norvegicus 81 Frg1l1 ENSRNOG00000000964 ENSRNOT00000001279 2 1 1 60 12 34004537 34004555 GCAACTTGACATTGTGGGA 59 34004495 34004514 GGTTCCTGAAATCTCACCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 1 2 2 80 17 9737244 9739460 CGATCCCTCTGTGGTTCTC 60 9739504 9739522 CATTTGTGGTACAGGCGAC 59 NA Rattus norvegicus 81 Agk ENSRNOG00000011509 ENSRNOT00000015744 2 1 1 80 4 68551141 68551161 AAAGATGTACAACTGTCCACC 58 68551203 68557483 AAAGTCCTCTTTGCTCGTC 58 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402,ENSRNOT00000090181 1 2 2 80 1 170396036 170396054 ATTGTATCCGCCAGCTCTC 60 170395608 170395992 GCAGATCCTTTCCCTCTCC 60 NA Rattus norvegicus 81 AABR07027615.1 ENSRNOG00000043237 ENSRNOT00000068163 3 1 1 80 17 39455923 39457764 ACTCAACCTCCCTTCTTTGG 60 39457805 39457825 AGGAATTGATGCAGCTTTCTC 59 NA Rattus norvegicus 81 Rn60_X_0586.2 ENSRNOG00000051273 ENSRNOT00000075880 2 1 1 60 X 57718207 57718225 TAGAGGATCTGTCGCTGAG 58 57718246 57718267 AAAGTTCACTCCTCAAAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC111616.1 ENSRNOG00000055384 ENSRNOT00000082821 1 1 1 80 17 39272189 39272923 TATTCAACAGGACTCAGACTAAGG 60 39272132 39272151 ACTGCAAGTCTTTGAGTCCA 60 NA Rattus norvegicus 81 Lmo3 ENSRNOG00000047450 ENSRNOT00000072450 2 1 1 82 4 172951763 172992343 CAGAGACTACCTGAGGCTG 59 172992389 172992407 GCATCACCATCTCAAAGGC 59 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000090579,ENSRNOT00000067823 1 3 3 60 5 25578830 25578848 CCCAGACCAGTTGAATGAC 58 25578788 25578810 AGGTGTATGATAGTTAGGAGGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdxk ENSRNOG00000049937 ENSRNOT00000001589 3 1 1 81 20 10944287 10945249 TGCTCACTGGTTACACGAG 60 10945293 10945312 CGAGAGTTCTGTTGCTTCAG 59 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 1 2 2 80 1 89535302 89537997 TGCCTCTCACAGAATACATCC 60 89535242 89535260 TCACTGTACAGACCTTGCC 59 NA Rattus norvegicus 81 Grik5 ENSRNOG00000020310 ENSRNOT00000027578 2 1 1 87 1 81933925 81933943 GATTGGTGTCAAGCCACTG 59 81933517 81933874 ATACTCTACCATGCGCAGG 59 NA Rattus norvegicus 81 Hgf ENSRNOG00000007027 ENSRNOT00000009763 1 1 1 80 4 15458505 15458523 CACTGATCCAAACATCCGA 58 15453842 15458463 CCACGATAACAATCTTGTCCA 59 NA Rattus norvegicus 81 Ppil1 ENSRNOG00000000523 ENSRNOT00000068527 1 1 1 125 20 6863206 6864345 TACCTGGAGACTAGCATGG 58 6863099 6863117 GATCCTGTGGAACTTGGTG 58 NA Rattus norvegicus 81 Trpm6 ENSRNOG00000013053 ENSRNOT00000017892 1 1 1 80 1 234565971 234567089 AGATGTAAAGCAGCATACCC 58 234565910 234565932 CCAATGAGGTACTCTATTACCAG 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 2 2 2 81 17 38998195 38998213 AAAGGCCAAAGCCATTGAG 59 38998256 38999351 GATTGCAGGATTAACCATGGA 59 NA Rattus norvegicus 81 Prdm15 ENSRNOG00000001620 ENSRNOT00000046318 2 1 1 80 11 38337212 38339046 CCTCTGAAGGTATTTCAGAAGG 58 38337153 38337171 TAGCATCATCCAGTTGCAG 58 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 1 2 2 80 3 130045376 130045397 AGCTTATTTCATCAGGAGAGGG 60 130045432 130048063 CTCTCAGGAAATATACGAAGTTCTG 59 NA Rattus norvegicus 81 Arpc4 ENSRNOG00000008994 ENSRNOT00000011937 3 1 1 81 4 145334570 145336377 TGTGAAACAGGCTGATGAG 58 145336422 145336440 AAAGAAGTTCTCTGCTCGC 58 NA Rattus norvegicus 81 Lrrc69 ENSRNOG00000006498 ENSRNOT00000008656 2 1 1 80 5 28290531 28290554 GGAGACTTGGTTCTACTTAATCTG 59 28285961 28290494 GGTGAGATTCTGTAATCTGCC 59 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665,ENSRNOT00000065328 2 2 2 80 15 40572719 40572739 ACAGGAACACTGTATCTTACG 58 40572779 40575706 ATGGTGATGTAGTATCCAGGT 58 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665,ENSRNOT00000065328 3 2 2 80 15 40572720 40572740 CAGGAACACTGTATCTTACGG 58 40572779 40575707 TATGGTGATGTAGTATCCAGGT 58 NA Rattus norvegicus 81 RGD1563425 ENSRNOG00000000973 ENSRNOT00000049512 2 1 1 80 12 2025830 2025938 GATGTGTAAGAGGGCCTCC 60 2025981 2026000 TCCTTCACGTATGAGCACAG 60 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085,ENSRNOT00000081708 2 2 2 80 17 18041225 18041247 GTTTGACAGGATTTGGGATAGAG 59 18041282 18043258 GACAGTATTATATCTGCATAGCGG 59 NA Rattus norvegicus 81 Olr179 ENSRNOG00000048628 ENSRNOT00000039989 3 1 1 60 1 169844627 169844647 TATGTGATGATTCCACCTGCT 59 169844587 169844607 GAATCTGTTTGGTTCTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 1 2 2 80 4 145383707 145383726 AGCCCTACCAAGAGATACAG 58 145383563 145383664 TTCTTCTTGCGCTGTTCTG 59 NA Rattus norvegicus 81 Ints9 ENSRNOG00000013459 ENSRNOT00000018071 1 1 1 80 15 48400464 48403884 ACCGTCATATTTACAGAACCC 58 48403926 48403944 GTAGATGCACTTCATGGCC 59 NA Rattus norvegicus 81 Mob4 ENSRNOG00000014980 ENSRNOT00000020536 3 1 1 81 9 61736874 61736893 TACTCAGATGACAGCAACTG 57 61736935 61739767 ATAATCTATGGCAGGACACTC 57 NA Rattus norvegicus 81 Dph6 ENSRNOG00000037356 ENSRNOT00000056522 1 1 1 80 3 106130821 106133658 CAGATGACAACCAAGTGGAG 59 106130760 106130780 CATACAAGTCAATGGCATGGT 59 NA Rattus norvegicus 81 Drc1 ENSRNOG00000024905 ENSRNOT00000036815 3 1 1 80 6 27431549 27432545 GTGATGAGTCGGGTTTCCT 59 27431487 27431506 TCAGCAGATAGCACTCACTC 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875,ENSRNOT00000076661,ENSRNOT00000087153 3 3 4 126 1 216378808 216378826 TCCTTCTTTGCACTCCCAG 60 216380004 216381568 TCCATGCAGTCTGGATGAG 59 NA Rattus norvegicus 81 Ano7 ENSRNOG00000023427 ENSRNOT00000033233 1 1 1 80 9 100544432 100546132 CTAACAAGATGGGAGATGCAC 59 100546171 100546192 CACAAACTGAAAGATGAACACC 59 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 2 2 2 80 1 100653094 100654313 CGAGACCTATCTGCTGGAG 59 100653032 100653052 AGCAGCTGGTAGAAGATATGG 60 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 1 2 2 84 17 38712538 38713747 AGTTCCAACTGGAAGTACTACTG 60 38712476 38712494 ATTTCAGCCCACAGATGGT 59 NA Rattus norvegicus 81 Snrpe ENSRNOG00000031127 ENSRNOT00000042614 3 1 1 60 8 129371812 129371834 GGATAGAGGGTTGTATTATTGGC 59 129371774 129371794 TCTGCATCATCTAATACGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prokr1 ENSRNOG00000009556 ENSRNOT00000012913 1 1 1 84 4 119377941 119384244 CATTGACAGGTATCTGGCCA 60 119377876 119377894 CCACACCAGGAAGATCAGG 60 NA Rattus norvegicus 81 Ankrd40 ENSRNOG00000002935 ENSRNOT00000067751 1 1 1 81 10 82038368 82038722 TATGGGAGTGGAAGAAGCTG 59 82038766 82038784 ATAGTTGGGAACGAAGGGC 60 NA Rattus norvegicus 81 Kifc1 ENSRNOG00000000479 ENSRNOT00000065349 1 1 1 83 20 5520114 5520132 GTCTTCGGGAAACACAAGC 60 5520179 5520295 CGTGGGACTCCTTATTGCT 60 NA Rattus norvegicus 81 Ninj1 ENSRNOG00000016587 ENSRNOT00000022341 1 1 1 80 17 15868701 15868719 TGGTGCTCATCTCCATCTC 59 15867550 15868659 TGTTGAGGTCATACTTGACCA 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214,ENSRNOT00000088676 3 2 2 82 1 80178584 80178602 TCCAGATCTACCACAACCC 58 80178445 80178538 GTTGATAACCACCTGCTGG 59 NA Rattus norvegicus 81 Vom2r60 ENSRNOG00000040198 ENSRNOT00000041244 2 1 1 86 12 4378646 4378664 CCTTATGGTCCACTTGGTC 58 4378713 4429171 TATAGACCTGGGAGTCTCTG 57 NA Rattus norvegicus 81 Vom2r60 ENSRNOG00000040198 ENSRNOT00000041244 3 1 1 87 12 4378646 4378664 CCTTATGGTCCACTTGGTC 58 4378713 4429172 ATATAGACCTGGGAGTCTCTG 58 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 1 2 2 80 11 57492805 57493285 GACCACAGATACTGGTTGGA 59 57493328 57493346 CTATGACCTTCTCTGGCCG 60 NA Rattus norvegicus 81 Pde9a ENSRNOG00000001174 ENSRNOT00000001559 3 1 1 80 20 10182930 10182949 CGTTTAAGATCAACGAGCTG 57 10182992 10187750 TGAGTCCTTCCAATTCCAC 57 NA Rattus norvegicus 81 Elp3 ENSRNOG00000014291 ENSRNOT00000019262 2 1 1 80 15 48943976 48957772 GTTATATCAGGAGTCGGCAC 58 48943915 48943935 TAGCATCTTTACCATGTACGG 58 NA Rattus norvegicus 81 Elp3 ENSRNOG00000014291 ENSRNOT00000019262 3 1 1 80 15 48977628 48987761 AGGCAATCAAGTATTCCGAG 58 48977567 48977586 GCTTCATGCAGTAATCAGGT 58 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 3 2 2 80 17 16257053 16257461 TGGAAGCATTCAAAGGTTCTC 59 16257500 16257521 CACCATTGAGAATCTTAGCTCC 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 3 2 3 80 5 48281273 48282414 TTCATGGAGCATAAGGACAG 57 48282456 48282475 TCTAGAGAACCTATGGCTCC 58 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076535 2 1 7 167 1 215609111 215609741 CAGAATCTAGGCTCAGAGC 57 215609871 215609890 AGTAGCCTTGAAACTTAGGG 57 NA Rattus norvegicus 81 Lcmt1 ENSRNOG00000014565 ENSRNOT00000019640 1 1 1 80 1 193382961 193384055 AAATCACTGGAGTCTCAGAAGG 60 193384094 193384114 GTACAGCTCCATCATGTTCAC 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 1 3 3 80 10 4343288 4343309 GATTCTTCCAGGATTCATCCTC 58 4343348 4344840 ATAATCACTATCTGGGCATCG 58 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 2 2 2 81 1 207756473 207756491 CATCAGCAACCCTTACCAG 58 207752091 207756429 CAGAAACACAAAGGATGCAC 58 NA Rattus norvegicus 81 Sfxn1 ENSRNOG00000018279 ENSRNOT00000024707 1 1 1 80 17 11068183 11068203 TACTGATCCCAGAAACATCCT 58 11065189 11068142 ATTCCTTGCCTGTAATCGTG 58 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 1 2 2 87 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472115 100472133 TGACGGAGGATTTGTACCC 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010,ENSRNOT00000061746 2 2 2 80 6 11026021 11049069 CTATTTCACTCCTCACGAGG 58 11025960 11025981 AAACACGAAGTGATAGATCCTG 58 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878,ENSRNOT00000022849,ENSRNOT00000088647,ENSRNOT00000049426 1 4 4 80 9 117612677 117612695 GCGAACATCTGAACTTGCT 59 117612739 117613875 GGTCCAACCAGTTCTTCTG 58 NA Rattus norvegicus 81 Map4k1 ENSRNOG00000020505 ENSRNOT00000027837 3 1 1 80 1 87947061 87947196 TCAGGCTGACACTGTTCTC 59 87947327 87947347 TCATCAGAGTCTGAGAGTTGG 59 NA Rattus norvegicus 81 Psmc5 ENSRNOG00000010038 ENSRNOT00000013997 1 1 1 80 10 94446576 94449483 TGAAGAACTCCAGTTGATTGTG 59 94449523 94449542 TTTGCATTGAGCTCATTCCT 58 NA Rattus norvegicus 81 Cav2 ENSRNOG00000057713 ENSRNOT00000080271 1 1 1 80 4 44574083 44578625 CACATCTGGATCCTAATGCCT 60 44578665 44578685 TGTCACACTCTTCCATATCGT 59 NA Rattus norvegicus 81 Lrrc15 ENSRNOG00000038539 ENSRNOT00000002348 1 1 1 60 11 74051652 74051671 CCACATCTGTTTCCTCTACC 58 74051693 74051712 GTTAGATCGGTGTAGTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 3 2 2 80 7 15205817 15205836 TGAATTCCTAAAGGCCAGGG 60 15205437 15205774 TTCCCATGCTCATCCTTGG 60 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 1 2 2 80 18 28381378 28381398 TTTGGTTTCAGGGAAGATGTG 59 28381439 28382552 TGCCTCTGTTAGGAATCCTC 59 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 3 1 1 105 1 198690833 198690851 GAGATGCAGGAGGAGATGG 59 198690920 198700160 CAACCTCCTTGTTGTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Bzw1 ENSRNOG00000013977 ENSRNOT00000019486 2 1 1 80 9 65289044 65289840 CAAGCACTTGAAGCAATACAG 58 65289880 65289900 ATCTTCAGTAACAGAGTCAGC 58 NA Rattus norvegicus 81 Dcst1 ENSRNOG00000020621 ENSRNOT00000027986 3 1 1 80 2 188682760 188687814 GTATGGCTTGACAAGCTTGG 60 188682699 188682717 TTGGGTACCAACAGGAGAC 59 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000049464 ENSRNOT00000071633 3 1 1 80 1 258830563 258830584 CTGGAATAGAGACAGTAAGCTC 58 258821057 258830522 GGACTTTAGCTGTGACGTG 59 NA Rattus norvegicus 81 Trib3 ENSRNOG00000007319 ENSRNOT00000009840 1 1 1 109 3 147815943 147815961 TTCCGACAGATGGCTAGTG 59 147814738 147815870 ACCAACTTCGTCCTCTCAC 59 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000071273 2 1 2 107 15 18399773 18411080 TGTAGAGAACCTCCATCGC 59 18411149 18411169 TGAGCTCTGAATTCCACTCTC 60 NA InUTR Rattus norvegicus 81 Ceacam12 ENSRNOG00000042158 ENSRNOT00000044927 1 1 1 80 1 79478315 79481726 TCCAAGTAAACAAACGTGGA 58 79481769 79481787 GATTCTTCAAGGTCCTGGC 58 NA Rattus norvegicus 81 Tmem79 ENSRNOG00000019414 ENSRNOT00000026414 1 1 1 82 2 187704361 187704379 GTGCTTTCCACCTATCTGC 59 187702400 187704317 TATATCAGCCGAGATATGGCA 58 NA Rattus norvegicus 81 Rps25 ENSRNOG00000027503 ENSRNOT00000029546 1 1 1 60 8 48728271 48729500 CTTAGTAAAGGACTTATCAAGCTGG 59 48729515 48729536 TTCTGGTGTAAATTACTTGGGC 59 NA DesignRelaxed Rattus norvegicus 81 Pcnxl4 ENSRNOG00000005568 ENSRNOT00000007369 3 1 1 80 6 95350536 95350558 CAAATCCTTCCAGACTCTATTCC 59 95350598 95350750 AACTGATGACGAGACTTGC 58 NA Rattus norvegicus 81 Slc35a5 ENSRNOG00000002069 ENSRNOT00000002853 1 1 1 80 11 60615019 60619787 CCAACGAAGAGAACAAGTATGAC 60 60619821 60619845 GTATACAGAGAATCAGCTTCATCAG 59 NA Rattus norvegicus 81 Myadml2 ENSRNOG00000036681 ENSRNOT00000054948 2 1 1 60 10 109826284 109826303 AGTGTATACCTTCCTGGCTG 59 109826243 109826262 GAAGACTGGCCAAATGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr149 ENSRNOG00000014793 ENSRNOT00000019929 1 1 1 80 2 152909103 152910056 GGCTGCCTATGATGATCCA 59 152909041 152909062 GTAGAAAGCTGAGCATATCGAC 59 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492,ENSRNOT00000078688 1 2 2 87 3 151360350 151360847 AGACTTGGATAGGGAGACAG 58 151360282 151360300 AACTAACACCTGGTCAGCA 59 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638,ENSRNOT00000010113 3 2 2 72 13 90706831 90706850 ATCGTAGTCATTCTCGAGGG 59 90704225 90704243 CTACCAGGTACGAGCTTCG 60 NA DesignNoJunction Rattus norvegicus 81 Hpse ENSRNOG00000002188 ENSRNOT00000002983 2 1 1 80 14 10559027 10559065 GAGATCACATGACAATATGAGGG 59 10560019 10560038 GAGTCAATCACTTCTCCACC 58 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939,ENSRNOT00000059494 2 2 2 80 17 43462930 43464276 TCTACATCTTTGGTGGAATTGG 59 43464317 43464335 AGGGATGATTCTGTGGGTC 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 1 4 4 80 6 8257523 8257541 CCAAGGTCTCAGATGAAGC 58 8257584 8260433 TCTGCATGATTTCTTCCACC 58 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 2 4 4 80 6 8250645 8257481 CTTGTTTACATAAGGGAAGTCG 57 8257522 8257540 CTTCATCTGAGACCTTGGG 57 NA Rattus norvegicus 81 Plcxd3 ENSRNOG00000014550 ENSRNOT00000019524 1 1 1 80 2 54302512 54359939 CAATCACAGAAAGAGCTCTCC 59 54359980 54359999 TGACAATATTGATGCCGCTC 59 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 1 2 2 81 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281198 140281216 AGGTCATGACCAGTTCCTG 59 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 3 2 2 83 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281196 140281215 CAAGGTCATGACCAGTTCCT 60 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000078029,ENSRNOT00000020648 2 2 2 74 17 15477420 15477444 CCAAGGAATTTGGAACATCTATACC 60 15476627 15476647 AGAAGGACACATCATTGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 3 3 3 81 1 140853798 140853817 ATAAGGCTGTACCCTGTCTC 59 140848634 140853754 CAGAGCATCCATGCAACTC 59 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 2 1 1 63 18 29587663 29587681 TCGCATTCACTTATGCCAG 58 29587487 29587637 CCGTTGCTGGATGAAATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Fut8 ENSRNOG00000008451 ENSRNOT00000011220 1 1 1 80 6 100513227 100525118 AGGCAAAGACAAAGTACTCC 58 100525159 100525179 TGTACCGATTGTGTAATCCAG 58 NA Rattus norvegicus 81 Rn60_20_0009.4 ENSRNOG00000053949 ENSRNOT00000092227 3 1 1 60 20 1546974 1546993 GGTAACTCCCACTCTGAACC 60 1546933 1546957 GGAACTCTTAACATCCCTATTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0251.2 ENSRNOG00000051328 ENSRNOT00000077023 2 1 1 60 15 21189545 21189565 AGATGTCCTCAATCAACTCCT 59 21189505 21189525 GGCTGTAATGTCTTCAAATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680519 ENSRNOG00000038322 ENSRNOT00000058354 1 1 1 83 6 103934462 103934483 GCGATAATCAACTCAAAGTTCC 58 103934398 103934418 GTTCCTTCGGTATCCTCGA 59 NA Rattus norvegicus 81 Hlf ENSRNOG00000002456 ENSRNOT00000055664 3 1 1 90 10 77918140 77918158 CCTACCTTTATCCCGCCTC 59 77916008 77918087 TGCTAAATGCGTCTTCAGGA 60 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 2 2 2 80 17 15976684 15976702 GAAGGTGCATGATCCTGAG 58 15976744 15977939 TCCTTAATCTCGTACCTCTCC 58 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047286 ENSRNOT00000072353 1 1 1 60 8 42046427 42046448 TGTCTGAGTTCATTCTTATGGG 58 42046469 42046487 ACAAACAAGGGACACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tll2 ENSRNOG00000013519 ENSRNOT00000018179 1 1 1 80 1 260357228 260359504 CTCACTTCTTCTCAGACAAAGAC 59 260357170 260357188 AGCTCCCAAATGTGTTGAC 58 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000037426 ENSRNOT00000056632 2 1 1 126 12 52672147 52672511 CCTGACAGAGAAGATCAGGG 59 52672685 52672703 GGTGAATCTGTCGAACACG 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000016093 2 1 2 116 5 154902098 154903606 CATCAAACGTGGAGGAAGG 59 154903686 154903704 AAACTCGCTCAGACTCTGG 59 NA Rattus norvegicus 81 Slc25a10 ENSRNOG00000036693 ENSRNOT00000054963 2 1 1 80 10 109668899 109668918 ACTACATGACCAAGGACAGC 60 109668959 109669064 CTCCAGTTAAACCACTGATGC 59 NA Rattus norvegicus 81 C1qtnf3 ENSRNOG00000018570 ENSRNOT00000025170 2 1 1 80 2 60926864 60926884 ATGGAGATTATGGATTCCGTG 58 60926926 60929407 TGTTTCCATGGTTTCCTGG 58 NA Rattus norvegicus 81 Rn60_20_0009.7 ENSRNOG00000058671 ENSRNOT00000079140 3 1 1 60 20 1613062 1613082 TAGATCCAAGACTCCACTCAC 59 1613022 1613045 ATATCTAGACATGCTAGGTTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otud7a ENSRNOG00000015503 ENSRNOT00000021068 2 1 1 80 1 124636973 124636991 TTCTGGCTTACGATCAAGC 58 124637035 124649767 GGATCACAGCTTGTTCTCG 59 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 3 1 1 78 10 40195382 40198443 ATAAGAGGGCATTGGAAGC 58 40195322 40195340 TTCTCTGGAGATGTCTCGT 57 NA DesignNoJunction Rattus norvegicus 81 Ggn ENSRNOG00000023931 ENSRNOT00000056955 1 1 1 172 1 88115606 88115624 CTTAACTCCTGTCCCTGCA 59 88116453 88116471 AAGTCGTAGTGCTCTAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0609.1 ENSRNOG00000029520 ENSRNOT00000045917 1 1 1 60 15 57187920 57187940 GCAAGAAGTGAAAGTGAAGAG 58 57187880 57187900 TTGAAGAAACTACTGCACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med6 ENSRNOG00000006976 ENSRNOT00000009483 3 1 1 80 6 105313036 105315938 ATATCCGAGATAATCTGCTGGG 59 105312977 105312996 AATCCAGGACACTACCACTG 59 NA Rattus norvegicus 81 Taf11 ENSRNOG00000024601 ENSRNOT00000038195 3 1 1 81 20 7480328 7480349 GCTGAAATTAGACACCAAGGAC 60 7478529 7480288 GACCAGGATTTGCATCTTCTG 59 NA Rattus norvegicus 81 Cd70 ENSRNOG00000051015 ENSRNOT00000070806 1 1 1 109 9 9843618 9845264 GCTGAATCTCACAGACCCT 59 9845337 9845355 TACGCAGATTGCCCTTCTC 60 NA Rattus norvegicus 81 Ndufs4 ENSRNOG00000011383 ENSRNOT00000015217 3 1 1 80 2 46438876 46476065 CCATCCAGGTTGTTGAACAC 60 46438815 46438837 CTCATCAACTGTTATAAGCTGGG 59 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 3 2 2 80 12 12733862 12734868 GTGTGCACTGAGTGATGTC 59 12733800 12733819 CCATTATGGTCCAACACCAG 59 NA Rattus norvegicus 81 Soat2 ENSRNOG00000053769 ENSRNOT00000085896 2 1 1 80 7 143766810 143766828 ACATCTTCTGCTTCGTCCT 59 143766872 143767284 TGAAGTTCAGCAGACCTCC 59 NA Rattus norvegicus 81 Prss22 ENSRNOG00000039698 ENSRNOT00000060888 3 1 1 92 10 13373190 13373356 TGCTTTAGCAGCAATATGGAC 59 13373118 13373137 TACTTTCTGAGACCTTGGGC 60 NA Rattus norvegicus 81 Rmnd5b ENSRNOG00000047719 ENSRNOT00000075525 2 1 1 80 10 37074209 37074228 CCTATCAAGCTCATCTGTGG 58 37074069 37074167 GGGACACTTTAGCTTTCCTC 58 NA Rattus norvegicus 81 Olr722 ENSRNOG00000006669 ENSRNOT00000008715 2 1 1 60 3 78748576 78748595 TCTTGGACTCTTTGTTGCAG 59 78748614 78748636 CAGAAGAAGGAAGTTTAGCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 3 2 2 80 1 192026238 192027055 TTCACTCCATTACAGGTCTCC 59 192027095 192027115 CTCTCAACGTCTTGTCTTCAG 59 NA Rattus norvegicus 81 Snapc5 ENSRNOG00000010156 ENSRNOT00000013490 1 1 1 81 8 69129251 69130551 CACCTGAACAGTTATGTGATATGTC 60 69130590 69130608 CTTGTGCTCAGCTTCAGTG 59 NA Rattus norvegicus 81 Gemin6 ENSRNOG00000027332 ENSRNOT00000037739 3 1 1 81 6 2908109 2908128 AGAAGTGAGAGTGATAGCCA 58 2908172 2910751 GAGGACAATGTTGGCAGAG 59 NA Rattus norvegicus 81 Lime1 ENSRNOG00000049336 ENSRNOT00000019545 2 1 1 81 3 176883839 176883857 CAGAAGCACAAAGGGACAG 59 176883900 176884016 AGACATCCATCTGAGTAGCTG 59 NA Rattus norvegicus 81 AABR07012323.1 ENSRNOG00000046752 ENSRNOT00000074852 1 1 1 98 2 193286800 193286818 CAAAGAGCACAGCACAGTG 60 193286880 193294489 TTGTAGCACAGCAGGACTC 60 NA Rattus norvegicus 81 Nab1 ENSRNOG00000012959 ENSRNOT00000017813 2 1 1 80 9 53916132 53924672 TCACATTGCATGAGCTCAC 59 53924716 53924734 CATCTCTTCTCGTCAGCAG 58 NA Rattus norvegicus 81 RGD1311343 ENSRNOG00000027852 ENSRNOT00000036447 1 1 1 80 10 15960407 15960425 CCAGATTCTGCCTCTTTCC 58 15952981 15960364 TTTCTGGTTTAAACCTGGCC 59 NA Rattus norvegicus 81 Ssb ENSRNOG00000007998 ENSRNOT00000011174 1 1 1 80 3 56099715 56100257 CAGGAAGTACTGAAACAAGAGC 59 56100298 56100316 AGGTCTGGTCATCCAAGTC 59 NA Rattus norvegicus 81 Ssb ENSRNOG00000007998 ENSRNOT00000011174 3 1 1 81 3 56099724 56100266 CTGAAACAAGAGCTCTAGAAGG 59 56100307 56100326 TCTTCTCTACAGGTCTGGTC 58 NA Rattus norvegicus 81 Olr1730 ENSRNOG00000000759 ENSRNOT00000000986 2 1 1 60 20 1647625 1647643 TCCCACTTACATACACCCA 58 1647666 1647685 AGCAGATGTCAATAAAGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1020 ENSRNOG00000049559 ENSRNOT00000040812 2 1 1 60 7 7310912 7310930 GCCATGTCCTATGATCGCT 60 7310870 7310894 TCATTATGATAGGGTAGTACAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1388 ENSRNOG00000046425 ENSRNOT00000041536 3 1 1 60 10 34564480 34564501 ATTCAAACAGGACTCATGATGG 59 34564521 34564540 AGAAGAAGTGATTCAGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fv1 ENSRNOG00000019132 ENSRNOT00000025846 2 1 1 133 1 100224729 100225038 TCTACTTCCCTTCAGCCTC 58 100225135 100225153 TATGTGTAGTAGCGGTCCC 58 NA InUTR Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336,ENSRNOT00000020717 1 2 2 80 2 187090660 187091311 GCTCATAGAGATTCACAATTCC 57 187091349 187091370 TCACTGATGTCTCTGATAATGG 58 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 3 1 1 104 12 11734975 11734996 TACAGTTCCATGCTGGAGC 60 11735064 11735082 TGTTATCCTCCAGGTGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000024825 3 2 3 80 18 29458369 29458387 AGAGGCACAATCTGAACGA 59 29458430 29459841 AGCAAATCTACCACCTCCTG 60 NA Rattus norvegicus 81 LOC691422 ENSRNOG00000007076 ENSRNOT00000009270 2 1 1 60 7 15852607 15852626 TTGAGTGTAAGGAACTGGTG 58 15852566 15852588 CCCATATCTTCCCAACATTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 3 2 2 106 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025927 99025945 TCACAGAATCTGCATCCTG 57 NA Rattus norvegicus 81 Irak1bp1 ENSRNOG00000008984 ENSRNOT00000068482 2 1 1 82 8 90343592 90343610 AGAGGCCAAGAAGAGTGTG 59 90343654 90350578 TTACATTCTCTGTCTGCACAC 58 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000008898 3 1 2 112 5 107853559 107853577 CTAATGGTGCTGCACAAGG 59 107853388 107853486 TAGATAGGGCTCGCAATATCAC 60 NA DesignRelaxed Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000011166,ENSRNOT00000082359 2 3 5 80 4 22411126 22421342 TCACAATGTTTCGCTATGCAG 60 22411066 22411086 CAATTCCATGGATAATGGCCG 60 NA Rattus norvegicus 81 Olr1418 ENSRNOG00000061794 ENSRNOT00000050448 2 1 1 60 10 44025800 44025822 GCTATCTATAACTACATGCTCCC 58 44025762 44025780 ACACCACCATGTCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox14 ENSRNOG00000061425 ENSRNOT00000091207 3 1 1 60 7 141380375 141380393 GATGATGCTCCTCACTGTG 58 141380417 141380435 GAGGTAATGGTAGGCTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad1 ENSRNOG00000018483 ENSRNOT00000025079 1 1 1 80 19 32232525 32232544 CCTATGGACACGAACATGAC 59 32232586 32236107 AGCAACTGCTTGAACATCTC 59 NA Rattus norvegicus 81 Spink3 ENSRNOG00000013464 ENSRNOT00000018110 1 1 1 80 18 38239530 38241991 GCTCAGTTTAGCAGGTAACC 59 38238010 38238030 CTGGGACATCCCATAATTTGC 60 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000048702 ENSRNOT00000071050 2 1 1 60 8 42833346 42833367 TGTTTCTTGTACACAGTGATGG 59 42833386 42833406 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 3 2 2 81 5 16913699 16913718 TAACAACCATGGCCATTTGG 59 16909787 16913657 ACTTGCACAATAGTCTGACAG 58 NA Rattus norvegicus 81 Wdr88 ENSRNOG00000037393 ENSRNOT00000056583 2 1 1 80 1 91507397 91507417 TTCTGTCTCCATGGACAAGAG 60 91502726 91507356 GTATGTGCCTCCTGTATGGT 59 NA Rattus norvegicus 81 LOC103690273 ENSRNOG00000053485 ENSRNOT00000088755 1 1 1 60 8 43523852 43523870 CTATGACCGCTTTGTTGCC 60 43523810 43523831 TCTGTGGCTTATTATGACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Banf1 ENSRNOG00000020460 ENSRNOT00000027734 2 1 1 97 1 220744728 220745384 CTTTGACAAGGCGTATGTGG 60 220744650 220744668 CATTGGCACCACATGTGTC 60 NA Rattus norvegicus 81 Rph3al ENSRNOG00000061429 ENSRNOT00000081725 3 1 1 82 10 64046888 64075056 AGACTGCCGGAAGAAAGTC 60 64046824 64046843 AGATCTTACACAGCCACAGG 60 NA Rattus norvegicus 81 AABR07006775.1 ENSRNOG00000047214 ENSRNOT00000072116 1 1 1 110 1 257747284 257749465 GGATCTTCACACTGTACAGC 58 257749538 257749556 GGATTCCTAGTCCAGTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Gap43 ENSRNOG00000001528 ENSRNOT00000002091 1 1 1 137 11 58672794 58672812 CTAAACAAGCCGATGTGCC 60 58672911 58717253 CTACAGCTTCTTTCTCCTCCT 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654,ENSRNOT00000083153 2 2 2 80 1 189571068 189572023 TTGACTGTGAAGTGTGCCT 60 189572065 189572085 TAAGACAGTAGCCTCCTTCAG 59 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 1 1 1 87 14 107349706 107349824 GAAAGAACAAGTACCGCCA 58 107349875 107349893 CTTTGAAGGATGGCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Srxn1 ENSRNOG00000031167 ENSRNOT00000041456 3 1 1 81 3 147621145 147631324 AACCTGAAGACCACTTCTG 57 147632664 147632682 AAACAGCTTTGCTGAAAGC 58 NA Rattus norvegicus 81 Olr272 ENSRNOG00000059313 ENSRNOT00000090059 2 1 1 60 1 172813575 172813595 CCATGTACTTCTTTCTCAGCC 59 172813616 172813635 GTGACAGAAGATGAAATGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efr3b ENSRNOG00000012950 ENSRNOT00000068214 1 1 1 80 6 28403118 28403136 TACCTGAACCTCATCAGCC 59 28401458 28403079 TTTCTTCCTGGTCTCTATTACCTC 60 NA Rattus norvegicus 81 LOC685203 ENSRNOG00000038738 ENSRNOT00000059159 1 1 1 60 9 53440330 53440349 AGCTACACGAGAGTGAAGAG 59 53440370 53440390 GAAGGCGTCCTATATTGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf7 ENSRNOG00000006046 ENSRNOT00000007928 2 1 1 118 6 33507242 33507260 ATGATGTCGCTTTACCGGA 59 33504476 33507160 AAGAAGCTCTGGCCTTGAG 60 NA Rattus norvegicus 81 Vps26b ENSRNOG00000047235 ENSRNOT00000072851 1 1 1 80 8 28074910 28074928 GCCTATCTCTGAAGAACCC 57 28065647 28074866 AGTAGAGTTCGATTTGCCC 57 NA Rattus norvegicus 81 Vps26b ENSRNOG00000047235 ENSRNOT00000072851 3 1 1 80 8 28062348 28062367 CCATCAAGATGGAAGTTGGA 58 28059290 28062307 CATCTTTCAAGTGGTACTTGG 57 NA Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 3 2 2 80 3 148797644 148800671 AAATCAAGGCCATGGAGAG 58 148800715 148800733 CCAAGATCTTCTGCTGCTC 58 NA Rattus norvegicus 81 Olr1158 ENSRNOG00000026232 ENSRNOT00000032963 2 1 1 60 8 19916639 19916660 CAGTTGTCTCATTGTTCTATGG 57 19916600 19916620 TAGGATGTTCGAGAAGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nppa ENSRNOG00000008176 ENSRNOT00000011005 2 1 1 104 5 164808509 164808527 CTTCTTCCTCTTCCTGGCC 60 164808592 164808717 TCTAGCAGGTTCTTGAAATCCA 60 NA Rattus norvegicus 81 Pcdhga2 ENSRNOG00000034126 ENSRNOT00000043154 2 1 1 60 18 30817344 30817362 TTTGTGGGAGTGGATGGAG 59 30817386 30817404 TGAGTGAGACTTCATGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Loxl1 ENSRNOG00000008680 ENSRNOT00000034300 2 1 1 81 8 63070122 63072126 TACATCCTCAAGGTGCACG 60 63070059 63070077 GGATGTTGCATCTCACCAC 59 NA Rattus norvegicus 81 LOC100911689 ENSRNOG00000046670 ENSRNOT00000041899 1 1 1 85 1 99325882 99325903 CATCAATGAATACCTATGCGGG 59 99324968 99325842 CATGGTAATAGTTGCTATAGCAGTG 60 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000010468 ENSRNOT00000014155 1 1 1 80 2 234189726 234194458 ACCCGAACTAGGTGATACG 59 234189664 234189682 ACAGTGATGTGGTGGTACC 59 NA Rattus norvegicus 81 Gramd1c ENSRNOG00000047327 ENSRNOT00000071065 3 1 1 80 11 62628076 62628096 CCGAACTAGGATTAAACGCTG 59 62628138 62631315 TTCCTGGACTTCTTGGCTG 60 NA Rattus norvegicus 81 Olr1149 ENSRNOG00000057779 ENSRNOT00000091744 1 1 1 60 8 19586369 19586389 GAGGTACACAGTTATCATGGA 57 19586329 19586349 TAGCAGGGACAATAGAATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1149 ENSRNOG00000057779 ENSRNOT00000091744 2 1 1 60 8 19586062 19586081 GAAAGCACAAAGCCTTTACC 58 19586021 19586042 CCATAGAACAAGGAAACAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Josd2 ENSRNOG00000019442 ENSRNOT00000026379 2 1 1 81 1 100474512 100476134 GAAATCTGCAAGAGGCTAGC 59 100476177 100476196 CGTTGACATCATAGTTGCCG 60 NA Rattus norvegicus 81 LOC102555919 ENSRNOG00000022971 ENSRNOT00000039827 1 1 1 80 10 36365081 36371568 TTTGTTCTGGGAGGGATGAC 60 36365020 36365042 CCATTGATCTGATCCTTTCTCAG 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396,ENSRNOT00000028363 3 2 2 80 1 221262302 221263128 CCGTCTATTAAGCCAGACAC 58 221262241 221262259 CAGAGCCTCTAAACTGCTG 58 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 2 2 2 80 1 211381616 211383131 GATGAGCTTTCTAAGACCCTG 58 211383827 211383845 TTTCCGATACCTCAACAGC 58 NA Rattus norvegicus 81 Hcn3 ENSRNOG00000020444 ENSRNOT00000027785 3 1 1 80 2 188464501 188464519 CCAAGATCCTTAGCCTGCT 59 188463071 188464458 TGTGAAAGATCTCCTCCCAC 59 NA Rattus norvegicus 81 Mtif2 ENSRNOG00000004161 ENSRNOT00000005834 2 1 1 80 14 113960121 113961206 AGACAAAGGAAGAGGTCCTG 59 113961247 113961267 TTCCCAGCAACTAGAATTGAG 58 NA Rattus norvegicus 81 Mir410 ENSRNOG00000035557 ENSRNOT00000053680 2 1 1 60 6 133893999 133894018 TTGAGGAGAGGTTGTCTGTG 59 133894039 133894059 GGCCATCTGTGTTATATTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col14a1 ENSRNOG00000026415 ENSRNOT00000067649 1 1 1 80 7 95185983 95190198 GCAAAGGAAGTATGTAAAGCAG 58 95190233 95190257 GAAATTGTCATCTCCTATACTCCAG 59 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 2 2 2 80 10 38931240 38931371 GACACAAGGTTTCTGGTTCG 60 38931411 38931432 TGTCTGATCTTTACCCAGAAGG 60 NA Rattus norvegicus 81 LOC102556121 ENSRNOG00000045669 ENSRNOT00000072482 1 1 1 109 10 81984637 81984655 AAGTTACCAGAGCCTCCTC 58 81984728 81985774 TGTCTTTGTCCTTCCGGAG 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 3 2 2 80 1 201067356 201070050 AAGTTAGAGGTGAGGGTGG 58 201067294 201067314 ATAGACCTGGTAAGACTCCTG 58 NA Rattus norvegicus 81 Dsp ENSRNOG00000013928 ENSRNOT00000018649 1 1 1 80 17 27297199 27298284 GCAGATAGACTTTAGATTGTGGG 59 27297141 27297162 CAGAAGCTCTGATAGTTGTCAC 59 NA Rattus norvegicus 81 Dsp ENSRNOG00000013928 ENSRNOT00000018649 2 1 1 80 17 27299973 27301002 ACGAGCTCAAGAGTGTACAG 60 27299912 27299930 GGAAGTTGGCAAGCATGTC 60 NA Rattus norvegicus 81 Lrrc59 ENSRNOG00000003524 ENSRNOT00000004941 2 1 1 80 10 82357102 82357123 TAACCTTCAGCATTTGGATCTC 59 82357161 82357401 CACTTCAGATTCTTGAGCTGAG 59 NA Rattus norvegicus 81 Clec11a ENSRNOG00000019138 ENSRNOT00000025949 2 1 1 80 1 100293302 100293321 GGAAGGAATGGGAAGGAGTC 60 100293097 100293262 CCTGGAGATTCTTCAACATCAG 59 NA Rattus norvegicus 81 LOC685544 ENSRNOG00000020131 ENSRNOT00000027270 2 1 1 60 1 215460772 215460790 TCTTCCTGTTGCCAATCCA 59 215460814 215460832 GCTTACAACAGCTGGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000086937,ENSRNOT00000077991 1 4 9 80 20 2083547 2083568 AAAGAATCCAAAGACCCTAGGA 59 2079784 2083509 TTGTAATTCTGGTCACATCAGG 59 NA Rattus norvegicus 81 Btbd3 ENSRNOG00000008088 ENSRNOT00000010835 1 1 1 80 3 131352875 131353429 TTGCCAGGACACAAATACG 59 131353472 131353491 TTTGTCCTCAGCAAGTTCTC 58 NA Rattus norvegicus 81 LOC100911028 ENSRNOG00000048275 ENSRNOT00000071925 1 1 1 81 1 213577938 213578951 AGAACAAGCTACACAAACCTG 59 213578994 213579012 ACAGCTTATAGGTGCCTGG 59 NA Rattus norvegicus 81 Qrfpr ENSRNOG00000014414 ENSRNOT00000039615 2 1 1 89 2 122894207 122898615 ACGCCTTGAGATTAAGTATGAC 58 122894139 122894157 TAGATTCTCTGGTGCACGG 59 NA Rattus norvegicus 81 Zc3hav1 ENSRNOG00000013948 ENSRNOT00000018782 2 1 1 80 4 66046815 66046833 TGGGCTTAACCAAGAGGAG 59 66041731 66046774 TTGTAACTCTTGCATATCTCGG 58 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 3 2 2 97 10 49004717 49005087 GTCCAAGTCTCAGGTGGAG 59 49004638 49004656 ATTCCTCCAGGTCAAAGCC 60 NA Rattus norvegicus 81 Dnajc17 ENSRNOG00000012368 ENSRNOT00000016692 1 1 1 80 3 110988157 110988532 CCAAACTAAAGCTGAAGTGGA 59 110988097 110988115 AAAGCCTCAGGAGGATGTC 59 NA Rattus norvegicus 81 Senp8 ENSRNOG00000011595 ENSRNOT00000015415 3 1 1 87 8 64561042 64572811 GAGGAATAGAAGTACTGCTGAG 58 64559870 64559888 TAACTCAAGACCACAGGGT 58 NA InUTR Rattus norvegicus 81 Ffar3 ENSRNOG00000037467 ENSRNOT00000056714 1 1 1 81 1 89303558 89303804 AACACTCTGCATCTGTGAC 58 89303495 89303513 AACACCAACAGATCCACTG 58 NA InUTR Rattus norvegicus 81 Maff ENSRNOG00000012886 ENSRNOT00000017181 3 1 1 113 7 120590675 120590693 CACCATTGTCAAGTCCGTG 59 120590770 120590788 GCTCTTTAGGACGGGAGTG 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Necab1 ENSRNOG00000007256 ENSRNOT00000009718 2 1 1 80 5 28597661 28654134 CAAAGAAAGACTACCAAGAAGC 58 28597602 28597621 GCAACTGATTCAAGGTTTCC 58 NA Rattus norvegicus 81 Prr9 ENSRNOG00000012312 ENSRNOT00000016430 2 1 1 137 2 192026626 192027190 GACTCTTCAAATCATCTGAGATGTC 60 192026513 192026531 GGTCCTGACATGATGGGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gpnmb ENSRNOG00000008816 ENSRNOT00000011945 1 1 1 80 4 78705780 78706073 GTATGTGATAACAGATCAGATCCC 59 78706111 78706130 AGGAAGGTTTCATCAGACGA 59 NA Rattus norvegicus 81 Fabp2 ENSRNOG00000024947 ENSRNOT00000029871 2 1 1 80 2 227080927 227080945 GCATTTGATGGCACTTGGA 59 227080988 227082264 CTTCACCACATTAATGCCCA 59 NA Rattus norvegicus 81 Fabp2 ENSRNOG00000024947 ENSRNOT00000029871 3 1 1 80 2 227082766 227082925 TGCTGTCATTTCACTGGGA 59 227082967 227082987 CTCCTTTCCATTGTCTACACG 59 NA Rattus norvegicus 81 Lxn ENSRNOG00000013572 ENSRNOT00000018402 1 1 1 80 2 164631387 164631406 GTAATGTGGCAGAACTCGAC 59 164629202 164631345 ATCGTTTCTTTGCACTTGCT 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521,ENSRNOT00000046456 2 2 2 80 6 137940548 137942481 CATTCAGCAAGACTTTCTCCC 59 137942523 137942541 TATCTGTCGGTGGTCTTCC 59 NA Rattus norvegicus 81 Lpxn ENSRNOG00000012611 ENSRNOT00000017109 1 1 1 80 1 229663046 229663064 ACCTCCTAAGACCTCAGCA 60 229663108 229666248 TTCACTGAAACCTTGGCCT 60 NA Rattus norvegicus 81 Zfp483 ENSRNOG00000014975 ENSRNOT00000020207 3 1 1 81 5 76092626 76092644 CCTGAGAGTAGTGTGGAGG 59 76092688 76094671 CCTGAGTGTTACGATCTTCC 58 NA Rattus norvegicus 81 Vom1r59 ENSRNOG00000030886 ENSRNOT00000047760 2 1 1 60 1 75166124 75166142 AAGTGACACCATCTTCCAG 57 75166165 75166184 GTTCCCTAGAACACCAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 2 1 1 67 19 25947328 25948685 GAGAGCAGCATATTGCAGAG 59 25948713 25948733 CTTCTGCTTTCTCCAGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Btn1a1 ENSRNOG00000017514 ENSRNOT00000023622 2 1 1 81 17 43905462 43906356 GATCTCCTTACCAGCTCCC 59 43906399 43906419 AAACCCTAAGGCCAATATGAC 58 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 3 2 2 80 10 40563925 40565132 CCAGTTCATTGTCCAGAGGA 60 40565174 40565193 CCAAAGAACAGAGGGTAGGT 59 NA Rattus norvegicus 81 Sacs ENSRNOG00000014509 ENSRNOT00000019551 3 1 1 80 15 41507605 41507623 GCCTCATCTTCTAGCTGCT 59 41513496 41517622 CATGGTCTTCCTGAGTATCCC 60 NA Rattus norvegicus 81 Lenep ENSRNOG00000049513 ENSRNOT00000074920 2 1 1 90 2 188727473 188727492 GTGTATCAAGGAACTGCTGG 59 188727315 188727420 GGAGTCTTAGGGCTGAGTG 59 NA InUTR Rattus norvegicus 81 Hist1h4b ENSRNOG00000054017 ENSRNOT00000080490 1 1 1 138 17 44522346 44522364 TTCCTGGAGAACGTGATCC 59 44522466 44525632 ACTTTGTTTCTTAGCCGCC 59 NA InUTR Rattus norvegicus 81 Prrg1 ENSRNOG00000026044 ENSRNOT00000066663 2 1 1 139 X 45732517 45753740 ATGGGAAGAGAATGCTGGG 60 45719068 45719086 CATTTGCTCTTGGGTAGCG 59 NA InUTR Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 2 5 5 80 12 52399627 52399646 AAATATTCTTTCCGGAGGCT 57 52399686 52399870 CTTGTAATACTTGGCAAACCTG 58 NA Rattus norvegicus 81 Spatc1l ENSRNOG00000045929 ENSRNOT00000074268 2 1 1 81 20 12831250 12831268 TAAGAAGGTGTGCTTCTCG 57 12826863 12831206 ACTCTGGATCTCATTGAGGT 58 NA Rattus norvegicus 81 Tmem135 ENSRNOG00000016815 ENSRNOT00000022578 1 1 1 80 1 152898042 152902916 CTACTGTATTAAAGGCTTCATCAGG 60 152897986 152898005 CTAAATGCAGAAGGGATCCG 59 NA Rattus norvegicus 81 LOC102547216 ENSRNOG00000037486 ENSRNOT00000056743 2 1 1 80 6 144071951 144072084 TTCACATACAGACACTCACAG 58 144072124 144072144 ACAGTGGATAGGAGAGTAGTG 58 NA Rattus norvegicus 81 Olr1148 ENSRNOG00000006584 ENSRNOT00000008605 3 1 1 60 8 19548942 19548962 GCACTGTAAATGCACTACTCC 59 19548983 19549002 TGTTTCATGCAGAAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr63 ENSRNOG00000018551 ENSRNOT00000025027 1 1 1 60 1 167871291 167871309 CTATCTGCTGGTTCCTCCT 58 167871330 167871351 GATCTCCTTTGTCTTTACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 2 2 2 81 1 37740070 37740273 GGCTGCAAGGTAAAGAGTC 59 37740007 37740027 CACTCTAGGACAGAGGTTAGG 59 NA Rattus norvegicus 81 Mtif3 ENSRNOG00000047329 ENSRNOT00000075162 3 1 1 97 12 9855660 9855680 CAGATTCAACAGTGGATTGAG 57 9855736 9856653 AATATCTCATCCATCTCACTCC 57 NA Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 2 2 2 94 15 55421915 55423682 GAATTTGGTGAGACCTGGGA 60 55421840 55421858 TTTACCACCGAAGCAAAGC 59 NA Rattus norvegicus 81 Zfp263 ENSRNOG00000007678 ENSRNOT00000010442 3 1 1 80 10 12028131 12028615 GTAAAGGAGAGGGCATTATCTG 58 12028072 12028094 CCCAGTCATATCCTTATCTTCCA 59 NA Rattus norvegicus 81 AABR07035357.1 ENSRNOG00000050264 ENSRNOT00000072406 2 1 1 76 12 10973385 10973405 TCTGTCTTTCATTGTTCACCC 59 10973310 10973347 TTTGAACCTTGGGCAACTC 59 NA DesignRelaxed Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307,ENSRNOT00000080013 2 2 2 80 6 6659255 6659276 ACAAGAGATCTGGTATCAATCC 58 6659316 6661000 CAGAAGAGTACCATCCACTG 58 NA Rattus norvegicus 81 Olr735 ENSRNOG00000054245 ENSRNOT00000089680 3 1 1 60 3 79009695 79009715 GTGGTCATTCTGCATTCTCTG 59 79009655 79009675 TAGATAGTGCCCTATACCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftcd ENSRNOG00000001261 ENSRNOT00000001699 3 1 1 98 20 12817087 12817105 TGTACCTCTATGGTGAGGC 58 12816886 12817025 CCTGTTTGAGCTTCTCAGG 58 NA Rattus norvegicus 81 LOC100910274 ENSRNOG00000048155 ENSRNOT00000050785 2 1 1 60 3 79187129 79187148 CTTTGTGCTATTTCTGCTCC 57 79187170 79187189 GACCACCATGAGAAGATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 1 2 2 80 4 182594137 182594157 AAAGAGTTAGATGCCTTTCCC 58 182592588 182594098 TGCTATTAGAGAAACTGTTCCC 58 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102,ENSRNOT00000084702 1 2 2 80 17 48391734 48394020 TTGGTGAGAAGTGTGATGTG 58 48391673 48391691 GGTATGTGTCCAGTGTCAG 58 NA Rattus norvegicus 81 Dpm3 ENSRNOG00000029077 ENSRNOT00000045477 1 1 1 108 2 188583706 188583846 AGACAGAGCAAACATGACG 58 188583918 188583936 TAAAGGTAGCTCCAGACCC 58 NA InUTR Rattus norvegicus 81 Pmvk ENSRNOG00000020696 ENSRNOT00000028095 1 1 1 80 2 188784403 188784421 TCTGGTGTTGCTGTTTAGC 58 188784464 188786660 TTACCTCCAAGTCTGCTCTG 59 NA Rattus norvegicus 81 Rab10 ENSRNOG00000047088 ENSRNOT00000071425 2 1 1 80 6 27678255 27686145 AGATCAAGCTACAGATATGGGAC 60 27678197 27678217 CCATTGCTCCTCTGTAGTAGG 60 NA Rattus norvegicus 81 LOC100910646 ENSRNOG00000045695 ENSRNOT00000067009 3 1 1 81 X 74846208 74846227 GTTGCTCAGAAGACTACAGC 59 74844930 74846165 ATCTGAAGACTCTCCAGCTC 59 NA Rattus norvegicus 81 Nudt8 ENSRNOG00000017955 ENSRNOT00000024237 1 1 1 86 1 219248680 219248698 GAAAGGCAACCATAGTCCC 58 219248748 219248856 CTTCATCCACCTCCTCAGG 59 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 3 3 3 81 20 2096797 2096815 GCCAGAGAAGAAGGTGGAG 60 2096857 2097248 AATACAGCAGCATTTCGATGAG 60 NA Rattus norvegicus 81 Lce1m ENSRNOG00000009581 ENSRNOT00000012691 3 1 1 88 2 193334963 193334981 ATCTACTCCTGTGCCTGAG 58 193334519 193334537 GGATCTTGCATTTGGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ezh1 ENSRNOG00000020336 ENSRNOT00000027640 1 1 1 80 10 89125480 89126860 CAGCAGAACTTCATGGTGG 59 89125418 89125436 TTCGTCTTCCTCCTTCACC 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000035590,ENSRNOT00000080694 3 3 4 82 19 41314590 41322181 ACTCGAAGCCCTTACTCAG 59 41314526 41314544 GGCTCAAAGTTCACTTCCA 58 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 1 2 2 80 10 63651372 63651393 AGATATACTGCTCTTTGCTTCC 58 63651432 63652105 CTGTCCATCACATCCTTAGAG 58 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000014502,ENSRNOT00000082191 2 2 2 80 15 57259392 57259895 TTGTACAGCGACTTATCCGA 59 57259936 57259956 TACTCTGTTCCAGTCAACAGG 60 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312,ENSRNOT00000081934 1 2 2 80 3 111422564 111422582 ACTCCTTCAAGTACAGCGA 58 111422625 111427216 TTAACAACTTGTCTGCCCTC 58 NA Rattus norvegicus 81 LOC102546590 ENSRNOG00000042370 ENSRNOT00000042866 3 1 1 80 20 2268378 2268396 AGGAGCAGAGATACACGTG 59 2268192 2268334 TGGTTGTTGAAGGTTCCCA 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283,ENSRNOT00000048418 1 2 2 80 10 90254856 90254960 GCCCGCTTTAAGAATGACC 59 90254794 90254813 GAGCTTCTCCTTCTTCTCCA 59 NA Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000091495 1 1 2 81 X 156889612 156889791 AAGCTCCTCTGGAAAGACC 59 156889549 156889568 GCATAGATCCAAGGGTTGGT 60 NA Rattus norvegicus 81 Apeg3 ENSRNOG00000048353 ENSRNOT00000075745 2 1 1 60 1 70234758 70234778 CACTATCAAACGCACGATGAG 60 70234718 70234738 TGAGGTGTTCTTTAAGGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d2b ENSRNOG00000014543 ENSRNOT00000030645 3 1 1 80 8 97605877 97605895 CTAAGGACCTGGAGGAGTC 58 97604175 97605837 CTGAACTAGTGACTCCTTTACTC 58 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902,ENSRNOT00000033068 1 2 3 80 9 65144962 65146583 ATCACCATAGAGCAAGCCC 60 65146627 65146645 GGCGTAGTCTACATTCCCT 59 NA Rattus norvegicus 81 LOC100911047 ENSRNOG00000047110 ENSRNOT00000075736 3 1 1 80 1 147045790 147045808 ACAAAGAAGTCCCTGTTGC 58 147043839 147045746 GATCTTGTAGGCACCTGTC 58 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578,ENSRNOT00000088720 1 2 2 80 6 72395073 72395094 AGATGGCACTATTAGGTTATGG 58 72393795 72395033 ATTCCATGTTCCTTGTCTCC 58 NA Rattus norvegicus 81 RGD1306750 ENSRNOG00000042018 ENSRNOT00000067909 1 1 1 80 4 166801494 166801512 CAGCAACCAAGAAGAGCTG 59 166800339 166801453 CCCATTTACTTTCTGACATTGC 58 NA InUTR Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 3 3 5 70 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762934 120762953 AAGTAGTCCGGTATCGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lpar4 ENSRNOG00000002428 ENSRNOT00000003286 2 1 1 115 X 78043131 78043151 AATATGCTCTTCCAAAGTGCG 59 78043228 78046299 ATTCCTCGAATGAGTGCCC 60 NA InUTR Rattus norvegicus 81 Fam117a ENSRNOG00000004417 ENSRNOT00000005939 3 1 1 80 10 83191868 83192305 CAGTGAGGGTATCCCTTCC 59 83192349 83192367 CTTCTAGGCTTCTGTGCAG 58 NA Rattus norvegicus 81 Ppp4c ENSRNOG00000019813 ENSRNOT00000026909 1 1 1 80 1 198221387 198221406 CTTCATGGGAGACTTTGTGG 59 198220806 198221346 GGATATCGAACCTTAAGAGCC 58 NA Rattus norvegicus 81 Fam19a4 ENSRNOG00000005830 ENSRNOT00000067881 1 1 1 80 4 129213154 129228689 CTTCTTGTGTTGAAGCTTCC 57 129213093 129213112 CTTTACAGTCCTCTCCTTCC 57 NA Rattus norvegicus 81 Fosl1 ENSRNOG00000020552 ENSRNOT00000027891 3 1 1 146 1 220826757 220826775 GACCCTACCGAACATCCAG 60 220826885 220829261 CACAAGGTGGAACTTCTGC 59 NA InUTR Rattus norvegicus 81 Mettl22 ENSRNOG00000002714 ENSRNOT00000003700 3 1 1 85 10 7237364 7237383 TCAGATGTCCACCTGTACAC 59 7234458 7237316 AACTGGGACAGGAAGACTG 59 NA Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000052412 1 1 2 80 10 61974739 61979607 GTGTGAGGGTTATTGCAGC 59 61979650 61979669 GCTCTTCTTGTCCACAAAGG 59 NA Rattus norvegicus 81 Sowahb ENSRNOG00000002202 ENSRNOT00000002995 1 1 1 60 14 16493702 16493721 CTTAGTCCAAAGCTCTTCCC 58 16493743 16493762 GACAGTTCTAGACACTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx2-1 ENSRNOG00000008644 ENSRNOT00000011453 2 1 1 60 6 77419334 77419354 AGCCTATCTCATCTGAACTCC 59 77419294 77419314 GCAAAGTAGAGCAAGACATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3596c ENSRNOG00000035453 ENSRNOT00000053576 1 1 1 60 1 59704438 59704456 GCTAGGAGGCCGTATAGTG 59 59704396 59704419 GAGGTAGGAGGTTGTATAGTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyn ENSRNOG00000008180 ENSRNOT00000011130 1 1 1 80 5 16611291 16611310 GGATTTCCTCAAGAGTGACG 58 16611353 16636531 ATGCCTTCTGCAATCTGAG 58 NA Rattus norvegicus 81 Cnih4 ENSRNOG00000003717 ENSRNOT00000004939 2 1 1 87 13 99476054 99478190 TTAAACAAGTGGGTGATACCAG 58 99478238 99478256 GAAGGAAGATGACCCAGTG 58 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136,ENSRNOT00000073148,ENSRNOT00000071615 1 3 3 80 10 42668699 42673045 GAACTGGTCTATGGAAGAGC 58 42673088 42673106 GGAGAAGTCGATGACTTCC 57 NA Rattus norvegicus 81 Mrpl48 ENSRNOG00000018042 ENSRNOT00000024290 1 1 1 80 1 165579052 165579071 TCTAGCAGAAAGTTACGCCC 60 165568446 165579010 GGCATCGCATAACTTTCCTC 60 NA Rattus norvegicus 81 Stfa2 ENSRNOG00000050110 ENSRNOT00000042374 1 1 1 82 11 67466272 67469369 ATCGCTGACAAGGTCAGAC 60 67469413 67469433 TGAACTTTATACTGGACGGCT 59 NA Rattus norvegicus 81 Upb1 ENSRNOG00000038258 ENSRNOT00000058237 3 1 1 80 20 14185777 14185796 AGAGGAAATAGCTGAGGTGG 59 14180742 14185734 AAAGCGAAGGGCATATTCC 58 NA Rattus norvegicus 81 Lrrc19 ENSRNOG00000022225 ENSRNOT00000037206 1 1 1 80 5 113620115 113621070 CAGGCTTCTGAAACTGAAGTC 59 113620055 113620074 AACATTGCTACTGATGCCCT 60 NA Rattus norvegicus 81 Wnt7a ENSRNOG00000048782 ENSRNOT00000070832 2 1 1 130 4 123037976 123040297 CTATCTCCGGATCGGTGAC 59 123037864 123037882 CTATGACGATGATGGCGTC 58 NA Rattus norvegicus 81 Fhl3 ENSRNOG00000007541 ENSRNOT00000010007 2 1 1 110 5 142693702 142693720 TACATCCAGACAGACAGCG 59 142693792 142693908 AAACAGTTCCCTTGAATCGTG 59 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288,ENSRNOT00000088995 3 2 2 80 7 70462041 70463644 TGGGAATACACAGCTGTCAG 60 70461980 70461998 TAGTAGAAGAAGGGCCCGA 59 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866,ENSRNOT00000057407 1 2 2 80 14 85255755 85256620 TTCGTGAAGGACTGTGAGG 59 85256664 85256682 CTTGTCAACTCGGATGCAG 59 NA Rattus norvegicus 81 Peg12 ENSRNOG00000024429 ENSRNOT00000031973 3 1 1 60 1 123099686 123099706 CTCTTACTTTCGGGAAACCTC 59 123099646 123099666 GTAGCCTTCGTGAATGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem45a ENSRNOG00000048935 ENSRNOT00000073404 3 1 1 83 11 46765814 46765835 TTACTACTAATGCACTTCCGCT 60 46765873 46766833 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 AABR07039936.1 ENSRNOG00000037770 ENSRNOT00000041508 2 1 1 80 X 88298481 88299461 TGTGTTCGTGACTCTCAGG 59 88299502 88299523 AGAAATGCCATAGTGGTTTCAG 59 NA Rattus norvegicus 81 Klhl32 ENSRNOG00000007441 ENSRNOT00000050653 1 1 1 80 5 39032750 39063229 TCTCATCCAGGAACTAAATAGC 58 39032691 39032710 TTCTCCAACAAAGTGAGGTG 58 NA Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000083788 2 1 2 102 1 88361689 88361708 TTTGCTTGTCTGAAACCCAG 59 88353113 88361624 CTGGACTCCAGATCTGAGC 59 NA InUTR Rattus norvegicus 81 Aqp3 ENSRNOG00000009797 ENSRNOT00000013803 3 1 1 80 5 57425556 57425896 CTCTACTATGATGCAATCTGGG 58 57425497 57425515 GGCAAAGATACCAGCTGTG 59 NA Rattus norvegicus 81 Zfp711 ENSRNOG00000022391 ENSRNOT00000046364 1 1 1 80 X 84079187 84086734 TGATATCTTTGGATGATGTGGG 58 84086774 84086793 CTTGTGAACCATCACTACCA 58 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 3 2 2 80 1 101884698 101886181 CCTCCTGATACAGGAGTTCC 59 101886223 101886242 GTACAGAAGTCCACATGAGC 58 NA Rattus norvegicus 81 Gimap1 ENSRNOG00000042229 ENSRNOT00000059157 1 1 1 84 4 78371454 78373275 TCAGCAAGAAAGGGATGAG 57 78373322 78373341 CTCTCACCATCTTTCTTCCC 58 NA InUTR Rattus norvegicus 81 LOC100360449 ENSRNOG00000030476 ENSRNOT00000042201 2 1 1 60 3 4282470 4282489 AACATGATCAAGGGTGTGAC 58 4282512 4282530 AGTGAGCATACACAGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC302228 ENSRNOG00000047403 ENSRNOT00000071967 3 1 1 60 14 96300789 96300808 GATGGAAGGAAGGTGATGAG 58 96300831 96300849 GGCAGTTGATCTAGAACGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adprh ENSRNOG00000027260 ENSRNOT00000038439 3 1 1 102 11 64866734 64867415 AATCTCCAACACTGGTCCT 58 64867481 64867499 CAAAGGGTTTCGGGAAGAC 59 NA Rattus norvegicus 81 Mansc4 ENSRNOG00000036925 ENSRNOT00000055463 2 1 1 80 4 181477108 181477128 CAGTTCCTCAAGTACTACTCG 58 181472357 181477068 ATTACAGGAAACATCCTTCCG 58 NA Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 1 1 1 60 2 191291778 191294224 GAAGGCATTGAATGCAAGTG 58 191291737 191291756 AAGGGTTATCTCCTTCTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000091794 3 1 3 62 14 60058113 60060043 CAGGGTTGAAAGTGTGGTC 59 60058069 60058088 CTCATCAGACTTGCTGACAG 58 NA DesignNoJunction Rattus norvegicus 81 Sema5b ENSRNOG00000002238 ENSRNOT00000030074 3 1 1 80 11 68307654 68307974 TGAGATTCCTGTCATCCTGC 60 68307218 68307238 ACTATCAGGTGGATGAGACTG 59 NA Rattus norvegicus 81 Slc7a13 ENSRNOG00000024903 ENSRNOT00000035685 2 1 1 82 5 33785482 33793884 ATACGTAGCAGGTGAGCTG 59 33793930 33793948 ACACCACAGTTACCAGAGG 59 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235,ENSRNOT00000051028 1 2 2 80 5 99517800 99517819 TAGAAGAAACTCCAGCACCT 58 99514254 99517757 AAGCATCAACTCGCATCTC 58 NA Rattus norvegicus 81 Mms19 ENSRNOG00000046769 ENSRNOT00000075531 1 1 1 80 1 261204833 261204854 GCCTCTGCTAATTGAGAAAGTG 60 261204216 261204792 GCACAGCAAGCATTCAGAG 60 NA Rattus norvegicus 81 Tnfsf14 ENSRNOG00000047730 ENSRNOT00000074247 3 1 1 81 9 9762690 9763020 CTGATACAAGATCAACGATCTCAC 60 9764769 9764788 CACCAATGCCTATCAAGCTG 59 NA Rattus norvegicus 81 Fsd1 ENSRNOG00000050318 ENSRNOT00000072830 2 1 1 80 9 11076786 11076982 CAAATCAAAGATGGCGTGAC 58 11076725 11076746 GAGGTGACTCATATTGTCACTG 59 NA Rattus norvegicus 81 Nphs1 ENSRNOG00000020873 ENSRNOT00000045212 2 1 1 80 1 88923688 88923706 GAGTATGTGGTCACCTGTG 58 88923747 88924235 CAATATAGTTCGTCCACTCTGG 59 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000007807 2 1 2 85 4 82126452 82126470 TTCAGAGACGTCTTCTCCA 58 82125899 82126405 CATACTCTCCAACTTTCCCTG 58 NA Rattus norvegicus 81 Smad3 ENSRNOG00000008620 ENSRNOT00000039730 1 1 1 80 8 68578495 68586121 ACACAATAACTTGGACCTACAG 58 68578436 68578454 TGGTTCAGCTCGTAGTAGG 59 NA Rattus norvegicus 81 Entpd7 ENSRNOG00000045548 ENSRNOT00000023111 3 1 1 81 1 262994411 262994431 TACTGCACAGAGGATGTACTG 59 262994474 262997198 TGCCACAGTAATCCTGAGC 60 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 1 3 3 80 2 236669100 236669118 AATCGTTCCCTTCCGAGTC 60 236669162 236680079 AAGTCTTCGTGGTGATCCG 60 NA Rattus norvegicus 81 AC142181.1 ENSRNOG00000033815 ENSRNOT00000051964 2 1 1 80 4 70789103 70820224 GGGTACAAGATTAGATATCGAGG 58 70820264 70820282 ATCTCTGCTTCTGATGGCT 59 NA Rattus norvegicus 81 Vmac ENSRNOG00000048897 ENSRNOT00000073402 3 1 1 61 9 10340084 10340102 GACCAGATGATCCAGGAGC 60 10340127 10340145 CGTTGTCGAGTGATGTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir361 ENSRNOG00000035544 ENSRNOT00000053667 1 1 1 60 X 84708958 84708977 GCTTATCAGAATCTCCAGGG 58 84708917 84708935 AATCAGAATCACACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir361 ENSRNOG00000035544 ENSRNOT00000053667 3 1 1 61 X 84708958 84708977 GCTTATCAGAATCTCCAGGG 58 84708916 84708935 GAATCAGAATCACACCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028027.1 ENSRNOG00000021292 ENSRNOT00000033844 1 1 1 80 17 53396912 53396931 TGCATCATTGCAACGAAGAC 60 53396972 53396994 AGAAGGGTCTGGTTTAGAAGG 59 NA Rattus norvegicus 81 LOC679782 ENSRNOG00000042852 ENSRNOT00000062030 1 1 1 80 1 1618755 1618774 TGAACCAAAGCCTGAAAGAC 59 1618817 1619100 AGGTGTGATTACCCTTGGA 58 NA Rattus norvegicus 81 AABR07006823.1 ENSRNOG00000045862 ENSRNOT00000075459 3 1 1 117 1 258477150 258477168 CTTCACAGCGATGAGAGGA 59 258477032 258477069 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 AC109844.1 ENSRNOG00000053259 ENSRNOT00000088899 2 1 1 60 1 213583662 213583682 AGTGCGCCATTATAAATTCGG 60 213586802 213586822 TTCTGCTATTTCTGACAGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Boc ENSRNOG00000002041 ENSRNOT00000002790 3 1 1 80 11 61151802 61151820 GAGATTGGATACTGGCCAC 58 61151862 61152229 AAGAAATACCTTTCTCCAGGC 58 NA Rattus norvegicus 81 Pcdh20 ENSRNOG00000013306 ENSRNOT00000017765 1 1 1 60 15 71778823 71778841 CATCTACATCGTCCCAGCA 59 71777703 71778799 AAAGCAGAACAACATGCGG 60 NA DesignRelaxed Rattus norvegicus 81 Ostc ENSRNOG00000023322 ENSRNOT00000037393 1 1 1 80 2 235823815 235826587 GCTTACAGAGTAAACGGACAG 59 235823755 235823774 TATGAAACCTAAGCCTCCCA 58 NA Rattus norvegicus 81 Cryge ENSRNOG00000032869 ENSRNOT00000041632 3 1 1 83 9 72933671 72933689 GTACCCTGACTACCAGCAG 59 72933735 72935148 ATTCTGTGAGAGCTGGAGTG 60 NA Rattus norvegicus 81 RGD1562039 ENSRNOG00000030519 ENSRNOT00000049790 3 1 1 80 X 80351158 80351176 TACTAAGGTTGCCTCTCCC 58 80350752 80351115 TGGAAACGTATGAAATCGCC 59 NA Rattus norvegicus 81 Rn60_15_0538.1 ENSRNOG00000050211 ENSRNOT00000071777 3 1 1 60 15 49997532 49997551 CCTGTTTGTTCCTTTGATCC 57 49997491 49997510 CCATTTCTGAGTTGACACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 3 1 1 61 4 118160263 118161078 AGAATATCCGGAAGATGCAGG 60 118161100 118161119 GTTGTCTTCACAGCAGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Pgap1 ENSRNOG00000013388 ENSRNOT00000017967 2 1 1 80 9 61093606 61093627 CGCTAAGACTTCAAGACTATCC 59 61090189 61093566 CTACAACAAACTTGCTTCCG 58 NA Rattus norvegicus 81 Ubash3a ENSRNOG00000001167 ENSRNOT00000001541 3 1 1 80 20 9961535 9970548 TTAAGCACAGGACATACACGT 60 9970589 9970608 CATTTCTCCTGCTACTGGCT 60 NA Rattus norvegicus 81 Glis3 ENSRNOG00000014768 ENSRNOT00000019816 3 1 1 80 1 246472264 246476286 TTGACACTAAACCTTATGCCTG 59 246472205 246472223 TCACGTGCTTTCTTAGGGA 59 NA Rattus norvegicus 81 RT1-M10-2-ps ENSRNOG00000054348 ENSRNOT00000082861 1 1 1 80 20 2460559 2460900 AATATTGGGAGAAGGAGACACC 60 2460939 2460959 TAATTACCTCGGAGGAAGGTC 59 NA Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 1 2 2 80 16 758273 758291 AATGACACGGTAACCATCC 58 758333 758433 AAGGACATCAATGACCATCTG 58 NA Rattus norvegicus 81 Rn60_13_0803.2 ENSRNOG00000051246 ENSRNOT00000076447 1 1 1 60 13 75368044 75368063 CCACCATCAACAAGAATGCT 59 75368085 75368104 TTCTTTCAGATCATGTGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fancf ENSRNOG00000023968 ENSRNOT00000032922 2 1 1 60 1 107231433 107231452 GGGAAGAGCTGTGTCTAAGG 60 107231392 107231410 TCTTCCTGCAGAAATGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565752 ENSRNOG00000038337 ENSRNOT00000058376 2 1 1 60 6 103820259 103820277 GCTACTCCAGAGATGTCCT 58 103820301 103820319 ACCAAGTTGAGAACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565752 ENSRNOG00000038337 ENSRNOT00000058376 3 1 1 60 6 103820261 103820279 TACTCCAGAGATGTCCTCC 57 103820302 103820321 CTACCAAGTTGAGAACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc26 ENSRNOG00000011457 ENSRNOT00000015242 2 1 1 81 3 2507222 2507316 CGTCCCACTTCAGAAACTG 59 2507361 2507379 TGTCCGGAAAGTCTGTCAG 59 NA Rattus norvegicus 81 Olr783 ENSRNOG00000047060 ENSRNOT00000047208 2 1 1 60 3 103203179 103203198 CTATGTGGCAAGTCTGTTGG 59 103203138 103203157 TTGAGGGTCAGAGGTTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr783 ENSRNOG00000047060 ENSRNOT00000047208 3 1 1 60 3 103203179 103203197 TATGTGGCAAGTCTGTTGG 58 103203137 103203157 ATTGAGGGTCAGAGGTTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909966 ENSRNOG00000032371 ENSRNOT00000045582 1 1 1 60 1 149602681 149602700 TACACAAGGAGTGGAGACAG 59 149602640 149602659 ACAGGAACTCAGGATAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1089.2 ENSRNOG00000047587 ENSRNOT00000074664 1 1 1 60 2 89036252 89036273 ACGTATCTTACCCATGGTTCTC 60 89036213 89036233 TTGTATTTCGGACCACTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622 3 1 7 131 20 2515591 2515880 ACTTCCTTTACCAGGGACC 59 2517088 2517106 ACAGGTCTGTACTGTCCAG 58 NA Rattus norvegicus 81 Gpr156 ENSRNOG00000002797 ENSRNOT00000003773 1 1 1 80 11 65348684 65350356 GACAACCATTACCGACTCC 58 65348622 65348641 AAGGTCCAAATAACACCCAG 58 NA Rattus norvegicus 81 Mxd1 ENSRNOG00000017720 ENSRNOT00000023856 3 1 1 80 4 118471596 118471614 GCCATACAGTAGCAAGGAC 58 118466096 118471553 TGAGTTGATCTGCTACTGGT 59 NA Rattus norvegicus 81 Ckap5 ENSRNOG00000016067 ENSRNOT00000021837 3 1 1 80 3 80496144 80496162 ACCTTCTAAGGCAGTGTCC 59 80496205 80499377 GAATCTTCAACAGGTGCTGG 59 NA Rattus norvegicus 81 Gpr27 ENSRNOG00000010880 ENSRNOT00000014455 3 1 1 63 4 132138649 132138667 AGATGTTCTACGCCATCAC 57 132138694 132138712 TAACTGGCAACCACATAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M1-2 ENSRNOG00000031065 ENSRNOT00000038820 2 1 1 80 20 2409391 2409675 CCTAACAGCACGACTAATCAC 59 2409331 2409353 GATTCCATGACTGAAGTAACCTC 59 NA Rattus norvegicus 81 Scnn1g ENSRNOG00000017842 ENSRNOT00000024057 2 1 1 80 1 191708060 191708078 TGTCTCCATCAAAGTCCAC 57 191708122 191710010 GCACTGTACTTGTAAGGGT 57 NA Rattus norvegicus 81 Fam186b ENSRNOG00000054250 ENSRNOT00000082521 2 1 1 80 7 140942941 140942959 ACAAGCAGAAAGACCTGGA 59 140939173 140942897 ACTCTTGCTGGAGCTTAGG 59 NA Rattus norvegicus 81 Birc5 ENSRNOG00000050819 ENSRNOT00000072387 3 1 1 82 10 106856695 106860790 AACCCTATAGAGGAGCATAGGA 60 106860833 106860851 CTGACGGTCAGTTCTTCCA 59 NA Rattus norvegicus 81 Lyl1 ENSRNOG00000002950 ENSRNOT00000003980 3 1 1 161 19 25816218 25816236 AGTGATAAACCTGGGCCAC 60 25816358 25816471 ATGTAGACACTGTTGAGGAAGG 60 NA Rattus norvegicus 81 Rn60_5_0814.27 ENSRNOG00000051357 ENSRNOT00000076970 3 1 1 85 5 77403035 77403761 CTTGATGGGAAATCAAGATCCC 59 77402971 77402990 TATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Naa16 ENSRNOG00000045863 ENSRNOT00000071805 2 1 1 80 15 61620511 61620530 TGTGCCAAATACATGCTTCG 60 61614258 61620468 AGATGTTCCTTCCCGTGTG 60 NA Rattus norvegicus 81 Ppia ENSRNOG00000027864 ENSRNOT00000091873 3 1 1 69 14 86673831 86673849 CGTGTTCTTCGACATCACG 59 86673882 86675728 TTTGTCTGCAAACAGCTCG 59 NA DesignRelaxed Rattus norvegicus 81 Ccl7 ENSRNOG00000000239 ENSRNOT00000000256 1 1 1 84 10 69424042 69424413 GAAGCTGTTATCTTCAAGACCA 59 69424458 69424476 AGTATGCTATGGCCTCCTC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 3 2 8 113 13 68703049 68707606 AGATGACCCAGATTATGATGC 58 68707681 68707699 GGCTTTAATGGTGGTTCCA 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000080481,ENSRNOT00000066419 3 3 8 60 13 68709875 68709895 CACGTGAAGTTGGATGATCTC 59 68709914 68709935 TGTATGCGTAATTCAGCAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645,ENSRNOT00000088070 1 2 2 80 4 136873404 136876738 AGAACCAAAGCATCAATCCC 59 136876778 136876799 CGTAATGACAAGTTCCGATCTG 60 NA Rattus norvegicus 81 LOC102551255 ENSRNOG00000049257 ENSRNOT00000074410 1 1 1 60 1 129613673 129613693 CTTTGTGCTCATTGGAATTGG 59 129613713 129613733 AGCAAAGCATCCGAATAAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039303.1 ENSRNOG00000053857 ENSRNOT00000082660 1 1 1 80 X 73580181 73580203 TTACATCAAGACAGATAGCTCCC 60 73580242 73580262 TCCTCCCAACCAAATTCCTC 60 NA Rattus norvegicus 81 Gtpbp4 ENSRNOG00000016217 ENSRNOT00000074389 2 1 1 80 17 63121169 63121189 GAAGGATTTCCTGTCATCGAG 59 63120787 63121127 AAGCCTATCACAAGCCTCC 60 NA Rattus norvegicus 81 AABR07066416.1 ENSRNOG00000031939 ENSRNOT00000043269 1 1 1 80 9 8629544 8629564 GCAAAGAGGTTCTGTGAAGAG 59 8629261 8629504 TGTGATCAACCTATCTCCCTG 59 NA Rattus norvegicus 81 Olr298 ENSRNOG00000061803 ENSRNOT00000091487 2 1 1 60 1 212990900 212990922 ACTACTCCACTATCATCTACACC 59 212990862 212990882 TCCTTGTTCAATGAGTAGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1122 ENSRNOG00000006439 ENSRNOT00000008423 3 1 1 60 8 18762681 18762702 GCACAACAATCATTCCAAAGAC 59 18762642 18762661 TATGTGATGCTCTGTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst13 ENSRNOG00000005103 ENSRNOT00000006850 3 1 1 81 3 143156178 143156198 AAAGAATACAACAAGGCCAGC 60 143156241 143160553 TGTCTGTGATCTGCTCCTG 59 NA Rattus norvegicus 81 LOC316935 ENSRNOG00000046132 ENSRNOT00000043153 3 1 1 88 16 45822 45843 CCAGAAGTGTAAATTCGAGAGG 59 44787 45773 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 2 2 2 108 4 7109883 7110525 ATAGAACAACTGCAGGCTC 58 7109793 7109812 GAGAGTGTGGAATGAATGGG 58 NA Rattus norvegicus 81 Ebi3 ENSRNOG00000050509 ENSRNOT00000072031 2 1 1 86 9 11111691 11111709 CCTTCCCGGACATCTTCTC 60 11111264 11111642 CTTCAATAGGTCCCACCTGG 60 NA Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 1 1 1 60 10 42942660 42942679 ACTATGGAGAAGTCCACTGG 59 42942702 42944135 TTTCCACCTCTGCTATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Rarres2 ENSRNOG00000024705 ENSRNOT00000033918 2 1 1 82 4 78208030 78208235 GATGACCTGTTCTTCTCAGC 58 78207967 78207985 TTCCAGTCCTTCTTCAGGC 59 NA Rattus norvegicus 81 Rnf187 ENSRNOG00000049219 ENSRNOT00000073082 2 1 1 110 10 45274499 45275083 ATGCTTCTGCAGTGATGAC 58 45274407 45274426 GCCTAAGGGATGTAGGTAGG 59 NA InUTR Rattus norvegicus 81 Olr1055 ENSRNOG00000030191 ENSRNOT00000051359 3 1 1 60 7 16462201 16462225 TGTATTCTTACTAGGGACTACAGAG 59 16462240 16462261 ATAGCGATCATAGGACATAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684509 ENSRNOG00000050514 ENSRNOT00000074950 1 1 1 60 2 210116004 210116022 CCGCCTTCCTTAAGAATGC 59 210115962 210115980 CAGACAGTGAAGGACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 2 2 2 80 5 67900755 67985208 TTGTTGAGCTTGTCATCATGG 59 67900695 67900714 GGATATGCACCTGAAAGGTG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555,ENSRNOT00000065011 2 2 2 80 1 88698692 88698713 CTGAGACAAGAGAACTCATCCT 59 88698331 88698654 CCTCCTCATAATACTCCCTGTG 60 NA Rattus norvegicus 81 Olr332 ENSRNOG00000024746 ENSRNOT00000035813 3 1 1 60 1 229461844 229461862 AGTACCAGTGCTTCTCACC 59 229461886 229461904 ACATGAAGAGACCAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a2 ENSRNOG00000018082 ENSRNOT00000024374 2 1 1 89 18 56524249 56524268 CATTAGACGGACTCTGTGAC 58 56522401 56524199 CCATGGCTACCTGATAAACTC 58 NA Rattus norvegicus 81 Gcsam ENSRNOG00000022110 ENSRNOT00000043020 3 1 1 96 11 60175541 60177431 GCCTTGCAGATATTTCAAGG 57 60174573 60174592 TTGTCGAGCTTTAAATGTGC 57 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 3 2 2 80 4 176007114 176007133 GATTGGTGTTGGATGTGCAG 60 176002977 176007074 TATTCATATTGGCCCATGAGGA 59 NA Rattus norvegicus 81 LOC100911148 ENSRNOG00000046157 ENSRNOT00000065898 2 1 1 112 1 147081449 147081467 GTAACATCCAAGCCCAGGT 60 147081627 147081645 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Vom2r23 ENSRNOG00000048963 ENSRNOT00000073415 1 1 1 81 8 4044595 4044613 CAAGGAAGGCAGTGTTGTC 59 4044654 4049558 CTGATCCATATCTGTCTCATTGG 59 NA Rattus norvegicus 81 AABR07059215.1 ENSRNOG00000031486 ENSRNOT00000046248 2 1 1 85 4 9043573 9060456 CTGTAGTAGCAACAACAGCA 58 9043507 9043526 TGTTATTGCTGTTGTTGCTG 58 NA Rattus norvegicus 81 Sult1c2a ENSRNOG00000042111 ENSRNOT00000061861 2 1 1 80 9 4157491 4168136 TGGACAAACAACTGTAAGTACC 59 4157432 4157455 CATTCTGTAGAAGTGGTAGTAGGA 59 NA Rattus norvegicus 81 Tmem35 ENSRNOG00000001506 ENSRNOT00000002058 3 1 1 81 X 105134886 105143808 ACAGTGAGATGAAACGTGC 59 105143851 105143871 AGGAGAATGGAATTAATGCCC 58 NA Rattus norvegicus 81 Fbxo10 ENSRNOG00000012634 ENSRNOT00000016875 1 1 1 80 5 60602124 60606395 CCACTCATCCTGTGTAACCA 60 60602063 60602081 CCTGATGACACCTTTCCCA 59 NA Rattus norvegicus 81 Commd6 ENSRNOG00000038012 ENSRNOT00000057830 1 1 1 104 15 86139104 86139122 CTCAAGTATCCGTACGTGG 58 86136565 86139039 GTAGAAATTCTGAAACTGTGGG 57 NA Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000006519,ENSRNOT00000080714 1 2 2 80 10 104388130 104389765 AGCTGTCAAACTATATGGTGC 59 104389807 104389825 AAGTGGATCTGCAACACAG 58 NA Rattus norvegicus 81 Tmem221 ENSRNOG00000018167 ENSRNOT00000024424 3 1 1 85 16 19985017 19985036 ATCCTCTGAAGATGAGCCAG 59 19984342 19984969 TCTCCGTTTCCTCATCCTG 59 NA Rattus norvegicus 81 Rn60_X_0656.1 ENSRNOG00000051036 ENSRNOT00000076678 1 1 1 60 X 64676472 64676493 CACGGAGGATAAGATCAATGTC 59 64676433 64676453 CCAGAAAGGTTCAACATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Skap1 ENSRNOG00000023881 ENSRNOT00000030159 3 1 1 84 10 84576427 84576446 ACGTTTACGAAGTCCTACCA 59 84586072 84593925 TAATCGGCATAGTCCACTCG 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 3 4 5 89 2 30666639 30667390 GATCTAGCTCGGGAAGTCTG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Brinp2 ENSRNOG00000005592 ENSRNOT00000007455 3 1 1 80 13 75952495 75954231 AGAGTCAGAAGAATTCCAGACC 60 75952436 75952454 CAGTACTGGGAGATGGCTG 60 NA Rattus norvegicus 81 Mtrf1 ENSRNOG00000047106 ENSRNOT00000072969 1 1 1 80 15 61668952 61668971 AGTGCCTAAGGAGAAGTGTG 60 61669014 61669206 TGGCAGATATCACCTCCAG 59 NA Rattus norvegicus 81 Cox17 ENSRNOG00000038951 ENSRNOT00000059541 1 1 1 80 11 64968285 64968304 CTCAGGAGAAGAAGCCTCTG 60 64966040 64968243 CTTTCTCAATGATGCACGCA 60 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 3 1 1 60 10 11913407 11916800 GAGGATTTGAACTTGACAGGG 59 11916820 11916840 GCTCTAGGCTTAACTTCTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560,ENSRNOT00000027849 2 2 2 80 1 101054044 101054064 CTGCTCTTAGTCTACATGGGA 59 101053662 101054004 GAAGATGTCAAGAACTTGGCT 59 NA Rattus norvegicus 81 Get4 ENSRNOG00000001293 ENSRNOT00000001745 1 1 1 80 12 17473530 17473549 GCTGGTCGAGTACTCTACTG 59 17472239 17473488 CAGAGAAACTGTAGCACAGC 59 NA Rattus norvegicus 81 RGD1307929 ENSRNOG00000011887 ENSRNOT00000016084 3 1 1 80 10 65544684 65544704 GTAGTCTGGACTCTGTTCAGG 60 65544745 65545514 GGTTCCAATCTGTGGTTGTG 60 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 1 2 2 80 1 72644961 72644981 CTGACATTCTGTTGATTGCTC 58 72645022 72645122 GGTCTAATGGGATCATCCTG 57 NA Rattus norvegicus 81 Rn5-8s ENSRNOG00000059852 ENSRNOT00000085643 1 1 1 60 14 46646200 46646218 GATGAAGAACGCAGCTAGC 59 46646241 46646260 GTCGATGATCAATGTGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000068476,ENSRNOT00000067661 1 3 3 80 1 46894145 46896578 AGCCTTCAAGAAGTTGCTC 58 46896621 46896640 TTGGCAAACTGATGGAAGTC 59 NA Rattus norvegicus 81 Rn60_14_0866.3 ENSRNOG00000026873 ENSRNOT00000037005 2 1 1 60 14 85893283 85893304 GGCATGATCTATGACTCTTTGG 59 85893244 85893262 TCGCAAGTCTGTGTTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phox2a ENSRNOG00000019706 ENSRNOT00000026702 2 1 1 139 1 166894021 166894039 GAGGCTTCCAATACAGTCC 58 166894142 166896217 GAACTTGTAGGGAACTGCC 58 NA Rattus norvegicus 81 Syce1l ENSRNOG00000031097 ENSRNOT00000045250 3 1 1 80 19 45955317 45956058 CTCTGGGAGTTCCATGTCC 60 45956101 45956120 CATCAGCAGCTGATCTTTCC 59 NA Rattus norvegicus 81 AABR07016950.1 ENSRNOG00000049843 ENSRNOT00000040447 1 1 1 80 15 5486385 5486485 CTTCTGTTTAGAAAGGCATCGT 59 5486326 5486345 TTTGATGTTCTCCAAACGCT 59 NA Rattus norvegicus 81 Fopnl ENSRNOG00000053230 ENSRNOT00000083714 1 1 1 80 10 745977 745997 TTCTGACAGAATCAACACTGC 59 746039 750112 TCAGGTGGTCATCATCTGG 59 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382,ENSRNOT00000083264 3 3 3 80 7 107467361 107467823 ACATCTTTGAGTACCAAGTGGA 60 107467864 107467882 CATCCTGCTTCAGAAAGGC 59 NA Rattus norvegicus 81 Mrpl27 ENSRNOG00000003724 ENSRNOT00000004947 1 1 1 80 10 82378243 82378261 GGTGGCAGTTCTAAGAACC 58 82378304 82378681 ATGAACGTAGTGACCTTCCA 59 NA Rattus norvegicus 81 Mrpl27 ENSRNOG00000003724 ENSRNOT00000004947 3 1 1 81 10 82378243 82378261 GGTGGCAGTTCTAAGAACC 58 82378305 82378682 CATGAACGTAGTGACCTTCC 58 NA Rattus norvegicus 81 Pigx ENSRNOG00000033623 ENSRNOT00000043365 3 1 1 80 11 71945640 71945658 CCCAACAGGACTCTTTGTG 58 71945701 71950139 TCTGATACCATCACTGCCTC 59 NA Rattus norvegicus 81 Ltc4s ENSRNOG00000003244 ENSRNOT00000004359 1 1 1 80 10 35738504 35738522 AAGAACTTTCCACGTGTCG 58 35738366 35738460 CTGCAATTTACCTGGGCTC 59 NA Rattus norvegicus 81 F8a1 ENSRNOG00000037327 ENSRNOT00000042490 1 1 1 60 1 147022475 147022493 GTTATTGCAGTCCCTGGTC 58 147022516 147022535 CAGCTTCTTGATGCCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr121 ENSRNOG00000048603 ENSRNOT00000048499 2 1 1 60 1 168819160 168819181 GCATTGTTTAGCTTCCTAACTC 58 168819121 168819139 AGATGTGAACACTTGGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lamtor1 ENSRNOG00000020016 ENSRNOT00000027150 1 1 1 82 1 166995141 166995159 TACCATAGCCTGCCTTCAG 59 166995203 166995443 TCAATGATGTTGCTAGCTGTC 59 NA Rattus norvegicus 81 Mex3b ENSRNOG00000025142 ENSRNOT00000039748 2 1 1 115 1 144832038 144832056 GAAGAGCGTGAACATGACC 59 144832970 144832988 TGTAAGTGTTGGTCTTCGC 58 NA DesignNoJunction Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 2 2 2 80 15 10463900 10463919 TTGGGTTATGGACTCTCAGG 59 10463961 10464984 AGCCATGCATCTTAAAGCAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389,ENSRNOT00000086635 2 2 2 80 5 102680798 102689651 AACTTGAGTCAGAAGAGGCA 59 102680737 102680755 AGTCTCTTGCCCTCTTTGG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 1 2 2 80 9 61022385 61023943 GGAAATCATAAGACAAGCTCCT 58 61022326 61022344 TCCATGTCACCTTGATCCT 58 NA Rattus norvegicus 81 Rfx1 ENSRNOG00000006049 ENSRNOT00000008104 2 1 1 80 19 25210889 25210908 TGTACTACCTGATCGAGCAC 59 25210951 25211049 CCAGGTTTGCAAACTCTCC 59 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891,ENSRNOT00000082474 1 2 2 83 3 163954227 163954246 GAATTACAACATGCCTTGGG 58 163951019 163954181 ACCACAAACTGTTTGATGC 57 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083971,ENSRNOT00000083568 1 2 2 80 10 36285555 36285574 ACAGGAATGAGGATGAGAGG 59 36285617 36287049 CTTCGGGAATAACCAGCAC 59 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170,ENSRNOT00000078776 3 2 2 80 8 47675174 47675193 CTCTGTATGTTCCAGGAGCA 59 47675234 47683053 TGACAGCTCAGTCTCTTTCTC 60 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 3 2 2 80 8 67741613 67742497 TTCTGCTAAAGCTGATGGAG 58 67742538 67742558 CCATGATGAATGTGATGATGC 58 NA Rattus norvegicus 81 Tmem17 ENSRNOG00000009220 ENSRNOT00000012224 3 1 1 82 14 107306336 107306490 TGCACCTGAAGTATTCGGT 59 107306534 107306554 GGCCTCAATCAAGGTTATGAG 59 NA Rattus norvegicus 81 Ppp1r13l ENSRNOG00000025350 ENSRNOT00000047105 1 1 1 80 1 80279986 80281260 GTTCCCTCTAGGATGTCCC 59 80281303 80281322 GGCTATCTTCTGTAGGGACC 59 NA Rattus norvegicus 81 Prps1 ENSRNOG00000060262 ENSRNOT00000078582 3 1 1 80 X 111809223 111811308 TAAGAAGGATAAGAGCCGGG 59 111811350 111811369 ATAATATGATCCGCACCTGC 58 NA Rattus norvegicus 81 Sdhaf1 ENSRNOG00000047045 ENSRNOT00000074494 3 1 1 61 1 88780139 88780157 TACTGAAGAACCCGTCGAC 59 88780096 88780115 TTAGGGCATCACTATCGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0815.8 ENSRNOG00000051112 ENSRNOT00000075881 3 1 1 80 5 77564269 77564290 GGTAAAGTTTGCAAAGCTATGC 59 77564040 77564228 AGACAGCGATCAGTCTTGG 60 NA Rattus norvegicus 81 Marc2 ENSRNOG00000037850 ENSRNOT00000029439 2 1 1 80 13 102728860 102731656 GAGACCCTGAAGAGCTATCG 60 102728799 102728821 GAAATACATCCCAAAGAGTGGAG 59 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975,ENSRNOT00000036051 1 2 2 80 8 48429249 48429373 GGATGAGAAACCAACATGCT 59 48429415 48429434 ATCTTTGGGAACCTCTGGAC 60 NA Rattus norvegicus 81 Gucy1a2 ENSRNOG00000029876 ENSRNOT00000046058 2 1 1 80 8 776040 876314 GGAAGACCCATTCAGATGC 58 876357 876376 ATATCGTGGCATTCTCACTC 58 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897,ENSRNOT00000039954 3 2 2 80 10 65770580 65770599 GATATGAACTGGCGCATACC 59 65770640 65770866 AACTCGGTAGTACTTGTCTCC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602,ENSRNOT00000041872,ENSRNOT00000007109 1 4 4 86 6 99166537 99166555 GAGTGGTATCTCCTCCCAG 58 99165216 99166487 CCCTTGTTACTGATGTGCC 59 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 3 2 2 89 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322892 214322910 CATCAGGAGTGTGGCTAGG 60 NA Rattus norvegicus 81 Prpf39 ENSRNOG00000004521 ENSRNOT00000066702 3 1 1 80 6 86809837 86809858 CATCAGCACAGATCATTGATGG 60 86809894 86810071 GATAATTGTACTGATACCAGGCAC 60 NA Rattus norvegicus 81 LOC102549291 ENSRNOG00000046638 ENSRNOT00000073416 1 1 1 80 X 100632482 100632503 GGATCCTTCTCAGAAGAGTCTC 60 100632223 100632442 TCCCAAACGTAGCCTATAGC 59 NA Rattus norvegicus 81 RGD1562037 ENSRNOG00000027938 ENSRNOT00000033359 2 1 1 121 17 55674392 55674410 TGGTAAAGATCAGGCCTGG 59 55670556 55674308 CATAGGAATCTGCACACCAC 59 NA Rattus norvegicus 81 L3mbtl3 ENSRNOG00000011720 ENSRNOT00000061404 1 1 1 80 1 20039701 20039719 TCGGCATGAAGCTAGAAGG 60 20039761 20043606 TATATCCACAAACCTCAGCCA 59 NA Rattus norvegicus 81 Klhl4 ENSRNOG00000005215 ENSRNOT00000006992 2 1 1 80 X 86201635 86201654 AAGCTAGGCAACAAGATCTG 58 86201695 86208521 CTAGATCTGCAAGCAACTGAG 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 1 2 2 80 1 252833128 252845843 TTGATAAAGGTCCCAAACCA 57 252833067 252833085 TGTCAATGTTTGTGACCCA 58 NA Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 2 2 2 80 9 79649555 79649574 GAATCTGAAGCTGGAGATCG 58 79649615 79652301 GTTCCACATACCATCATCTCC 58 NA Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837,ENSRNOT00000064477 3 2 2 81 17 10497042 10497061 GACCTCATCAACCAGTTGAC 59 10493570 10497000 TCCTTTCTTCCCTTTCTAGGC 60 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000090387 1 1 3 80 17 53967298 53967538 CTGGAAGAACAGTCATGGT 57 53967582 53967600 TGGTGAACTTTACTGTGGG 57 NA InUTR Rattus norvegicus 81 RGD1562319 ENSRNOG00000039216 ENSRNOT00000060025 1 1 1 81 12 19563227 19565617 CATGAGTAACATGGCCCTG 58 19565662 19565680 TTGGTGGTAGAAGCCAGAG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 1 2 2 80 16 20801211 20801229 CCTTCCAAACAGTTGTGCT 59 20801042 20801168 TCTCCATTCCCTGATTGAGC 60 NA Rattus norvegicus 81 Zar1l ENSRNOG00000051294 ENSRNOT00000076716 2 1 1 81 12 495067 495086 AAACAGCTCTGTAGCAAGTG 59 491167 495024 AGGAACTTAAGCAGGTCTGG 60 NA Rattus norvegicus 81 Pcyox1 ENSRNOG00000016704 ENSRNOT00000022532 3 1 1 80 4 118195509 118196836 TGTCAAAGAGCTGGGTCTC 59 118195447 118195466 TCAAACACCAGAGACTTCCC 60 NA Rattus norvegicus 81 Gja4 ENSRNOG00000014357 ENSRNOT00000019246 2 1 1 60 5 145376161 145376179 GAGAAGCTGCTAGACCAGG 60 145376119 145376137 CCGTTAACCAGATCTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Litaf ENSRNOG00000002520 ENSRNOT00000003412 2 1 1 66 10 4753727 4753745 CTTCGTACTACACCCAGCC 60 4757749 4757767 ACATAAACCGTCTGCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0641.1 ENSRNOG00000022607 ENSRNOT00000039583 2 1 1 60 X 64095664 64095682 ATGAAGACCCACATGACCA 59 64095622 64095640 CTTCTAGCTGGGCCAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458,ENSRNOT00000084445,ENSRNOT00000015158 2 3 3 82 19 49476093 49476111 TGAGAATCCACAGAGCCAC 59 49476155 49478936 GGTTTCCAGCTTATACTGTGC 59 NA Rattus norvegicus 81 Rpl15 ENSRNOG00000008140 ENSRNOT00000010759 2 1 1 81 15 8189801 8190460 AGTCTGTTGCTGAGGAGAG 59 8190505 8190523 GTGGAATCTTCACCAACCC 59 NA Rattus norvegicus 81 Rpl15 ENSRNOG00000008140 ENSRNOT00000010759 3 1 1 83 15 8189424 8189685 AAGGCTAAGCAAGGTTATGTC 58 8189730 8189748 GTAGGTTGCACCCTTAGGA 59 NA Rattus norvegicus 81 Anapc2 ENSRNOG00000011295 ENSRNOT00000015099 2 1 1 80 3 2496518 2496537 TATCAATGAGTACCGCTCCC 59 2496578 2497343 ACATTACGAATCTCCCTCTCC 59 NA Rattus norvegicus 81 AABR07016056.1 ENSRNOG00000004090 ENSRNOT00000005432 3 1 1 60 14 93042022 93042042 GAGATGCTAAAGGATGAGGTG 58 93041982 93042000 GCCGATTGTGAAACATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy2f ENSRNOG00000019086 ENSRNOT00000046804 2 1 1 80 X 113390913 113390932 GTGGACCTTCTGAATGACCT 60 113387420 113390875 TCCAATGGTCTCTACCTTATAGAC 59 NA Rattus norvegicus 81 Ino80 ENSRNOG00000014483 ENSRNOT00000031672 1 1 1 80 3 111196077 111196098 CAAACCAGATACCTTGAAACCC 60 111195424 111196037 CGCAGTCTCAGTTTCTTCTC 59 NA Rattus norvegicus 81 Olr131 ENSRNOG00000048465 ENSRNOT00000042637 1 1 1 60 1 169050104 169050126 CTCTTTCCTCCATTTATGAACCC 59 169050066 169050084 TCCTCTGAATGTGCTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496,ENSRNOT00000083116 3 2 2 81 2 187366502 187367715 CTACTGCTTCCGAGACTCTG 60 187366440 187366458 GACAATGGCCTCTAGTCCA 59 NA Rattus norvegicus 81 Anapc16 ENSRNOG00000000576 ENSRNOT00000000702 3 1 1 80 20 29547558 29553092 GATACTAGAAGATGGCTCTGAG 57 29547499 29547518 TTCACCTGTTTAAGTGTGGA 57 NA Rattus norvegicus 81 Ildr1 ENSRNOG00000002289 ENSRNOT00000003137 2 1 1 80 11 67021123 67022196 ACTTCTCTGCCTCATACCAG 59 67021062 67021082 GAACTTCCCTCTGATTGTCAC 59 NA Rattus norvegicus 81 Rn60_X_0650.1 ENSRNOG00000057091 ENSRNOT00000086663 2 1 1 96 X 64915725 64915743 CCTACCGGGATGATAACGG 59 64914927 64914945 GGTAGGCATTCTTCGTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Dap ENSRNOG00000010747 ENSRNOT00000014439 2 1 1 93 2 84287174 84287192 GATTGTGCAGAAACACCCA 59 84287249 84326563 TGTTGGTTTAGGAGGGCTG 60 NA Rattus norvegicus 81 Treml4 ENSRNOG00000042360 ENSRNOT00000048975 2 1 1 80 9 14701285 14701306 ACTTCTTAGTTCTGACCACCTC 60 14700476 14701247 AAGAACTTTGGTTTCTGTGCTC 60 NA Rattus norvegicus 81 Rn60_14_0447.1 ENSRNOG00000051349 ENSRNOT00000074180 3 1 1 60 14 44803389 44803408 TAAGGAGCATCTGCCTACTG 59 44803348 44803366 ACAGATGAAGTCGTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061152.1 ENSRNOG00000005867 ENSRNOT00000007700 1 1 1 80 4 106983074 106983122 CTCGCTCTTACAGAGATTATCG 58 106983015 106983033 AGTTCCCACCATGATTCCT 58 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000089174 2 1 2 174 6 8887152 8887170 CCTACTTCTGGCGAGTAGC 60 8887310 8887328 AACATGGACAACTCTTCCG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1564804 ENSRNOG00000027455 ENSRNOT00000009044 2 1 1 83 5 138277335 138277356 GAGCAAATGCTACTAACAAGCT 59 138276155 138277291 CATCTTCCAGCACCTTCCT 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 1 1 1 90 10 45528763 45534526 ATTTCCAGCCTGGAGAAGG 59 45528691 45528709 ATTGTGGATCTCCTCCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clec3a ENSRNOG00000012238 ENSRNOT00000016307 1 1 1 80 19 46738532 46740831 TGCAGACAGTCTGTCTTCG 60 46740874 46740893 CTTCGTGGTAATGCTTGAGG 59 NA Rattus norvegicus 81 Zfp112 ENSRNOG00000029022 ENSRNOT00000087253,ENSRNOT00000030440 1 2 2 80 1 80955067 80955959 GCTCTCAGGAAGAAGGAGTG 60 80956002 80956020 AGTTCCTCAGGACAAAGGG 59 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 3 2 2 80 18 4077879 4077900 CAGAATAACTCATACGTCCAGC 59 4077940 4078977 TCTTGCTACAGTCTCTGCTC 59 NA Rattus norvegicus 81 Wdr92 ENSRNOG00000022857 ENSRNOT00000029980 2 1 1 80 14 100381556 100381577 TAGATGGTATAGGTGGACTTGG 59 100381616 100383715 ACACCTTTACAGTTCCATCTC 58 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863,ENSRNOT00000042180 1 2 2 80 7 143415827 143415845 GAGATCAGCGAGTTGAACC 58 143415127 143415783 TTGCACACCTTTACACTGC 59 NA Rattus norvegicus 81 Mroh8 ENSRNOG00000007341 ENSRNOT00000055219 1 1 1 80 3 153339331 153342709 TAGCTAAGGAGAGTAGACGAG 58 153339271 153339291 CTTTGCAGTATACTTCTCGGG 59 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410,ENSRNOT00000021193 1 2 2 80 4 179305674 179305694 AAGAATTAGAAGCTTCGACCG 59 179298019 179305633 GATCTTTGGCCCTAAACGTC 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334,ENSRNOT00000033633 1 2 2 80 1 75466316 75466334 GATCAGGATGACCCTAGCA 58 75466378 75466771 TTTGCCAAACTCACCTGTC 59 NA Rattus norvegicus 81 Chrdl1 ENSRNOG00000004330 ENSRNOT00000006008 1 1 1 80 X 114632996 114633014 AGAAATGGCATCCCTACCT 58 114630679 114632954 AAAGCACATTCCCATTCTCTG 59 NA Rattus norvegicus 81 Cebpa ENSRNOG00000010918 ENSRNOT00000014517 3 1 1 60 1 91363785 91363806 ACGAGACGTCTATAGACATCAG 59 91363827 91363845 AGGAACTCGTCGTTGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hadha ENSRNOG00000024629 ENSRNOT00000038649 1 1 1 80 6 27619328 27621472 AGTGTTCAAAGGACTGAATGAC 59 27621512 27621531 ATCAGGTTGCTGAAGATGGA 59 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254,ENSRNOT00000022068 1 2 2 80 1 48284504 48286520 GCTGTATTACTGGTTTGTCCC 59 48286561 48286580 TCCATTATCCTGACAGCTCG 59 NA Rattus norvegicus 81 AABR07061755.1 ENSRNOG00000042732 ENSRNOT00000056573 2 1 1 60 4 142453448 142453468 AAGCCAGAGAAAGTAGTTGGA 59 142453489 142453508 CTACCATGATGGAGACGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561958 ENSRNOG00000022411 ENSRNOT00000035274 2 1 1 80 X 83930549 83930567 CCTAGGAAACACAACAGGT 57 83930610 83944551 TTTGGACATTTGCAGAAAGG 57 NA Rattus norvegicus 81 AABR07049780.1 ENSRNOG00000047815 ENSRNOT00000071641 1 1 1 60 5 137617214 137617235 TTGGGTTTCTGAGTTCATTCTG 59 137617175 137617193 GAGGATGCTGTTGGTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049780.1 ENSRNOG00000047815 ENSRNOT00000071641 2 1 1 60 5 137617105 137617123 ATCATCATGCTGGTCTGTC 57 137617063 137617084 TACAGAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 1 2 2 80 9 10745485 10745503 GGTATTCATGGTCGGAGCA 60 10744463 10745444 ATTGCCATTATCCACATCATCC 59 NA Rattus norvegicus 81 Ccny ENSRNOG00000018123 ENSRNOT00000024545 2 1 1 80 17 62372159 62375765 AGTACACCATCAAATGTGTAGC 59 62366161 62366184 TATCTAAGAGCATCCTTCCATCTG 60 NA Rattus norvegicus 81 Zfp496 ENSRNOG00000003129 ENSRNOT00000058308 3 1 1 80 10 45839725 45840166 TGCCTCCAAATGAGTCTCC 59 45839663 45839681 GGTCTGTCCACTCTGTGAC 60 NA Rattus norvegicus 81 Abca2 ENSRNOG00000014268 ENSRNOT00000020339 2 1 1 80 3 2666640 2666755 TTCATCTTTCTAGACGAGCCC 60 2666796 2666815 GATGAGGTCCAGAATGAGGT 59 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 2 1 1 115 9 82054305 82054323 TGTTCTTCCTACTGCTGCT 59 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 2 1 1 63 1 229938522 229938540 CAGAAGGTCTTCTTTGCCA 58 229938566 229938588 TAAGCAGCAACTTGTCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 3 1 1 63 1 229938521 229938539 GCAGAAGGTCTTCTTTGCC 59 229938566 229938587 AAGCAGCAACTTGTCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr785 ENSRNOG00000045817 ENSRNOT00000049984 1 1 1 60 3 103223756 103223777 ACCCAGTGATCTATACATTGAG 57 103223717 103223738 CTGAATACTCTCATCATTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361174 ENSRNOG00000048515 ENSRNOT00000068076 2 1 1 82 2 191866818 191869121 TTCTAAAGGCAATGGATGAAGG 59 191866757 191866778 GTCCCAAATCTCATCAAAGGTC 59 NA Rattus norvegicus 81 Rps27a ENSRNOG00000004426 ENSRNOT00000005872 2 1 1 81 14 113966757 113966975 CTGTGCTGAAATACTATAAGGTGG 59 113966699 113966718 GCACCACATTCATCAGAAGG 59 NA Rattus norvegicus 81 Ppp1r9b ENSRNOG00000052113 ENSRNOT00000089497 3 1 1 80 10 82802528 82802546 ATTCCTGGGCTTTCAGAGG 59 82802589 82806187 GCTGAATACTTGGATCGGTG 59 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 2 2 2 80 X 118449307 118450626 GAAGATGATATTTCTTGGGAGTCTG 60 118449251 118449272 CAGGTCTTCACTTTCATTTGCT 60 NA Rattus norvegicus 81 AABR07002774.1 ENSRNOG00000029805 ENSRNOT00000063839 2 1 1 80 1 84686088 84686107 ACTAGAGCAGGAGAAAGAGC 59 84686147 84696365 TCATAACCTGTCTCCAACTCTG 60 NA InUTR Rattus norvegicus 81 Pop4 ENSRNOG00000027646 ENSRNOT00000020474 1 1 1 80 1 94662688 94662706 GTTACGGGAATCCTTCTGC 58 94661608 94662647 CTTAGGGATAACTTTCAGGTGG 58 NA Rattus norvegicus 81 Olr584 ENSRNOG00000005742 ENSRNOT00000007553 2 1 1 60 3 75879132 75879153 GTCTTGTTCAGATACACAGGTC 59 75879093 75879112 TTCAATGAAACCAAACACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116,ENSRNOT00000051927 2 2 2 80 1 48334227 48335552 TTATCCCTGATGATCTACAGTGG 59 48334169 48334188 CCATTTCATAGGCCATGGTG 59 NA Rattus norvegicus 81 Ttc34 ENSRNOG00000024526 ENSRNOT00000037211 1 1 1 85 5 172264586 172264607 GGCACTGATTAGAATCAATGCT 59 172264653 172265465 CCTCCTGATACTTGCCCAG 60 NA Rattus norvegicus 81 Rn60_13_0837.3 ENSRNOG00000061854 ENSRNOT00000088806 2 1 1 60 13 78725332 78725353 TAAAGGCCTTCAACTAAGAGAC 58 78725373 78725392 CAAGCACTCTTATCCCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554255 ENSRNOG00000050376 ENSRNOT00000050154 1 1 1 60 4 88232276 88232295 TCTATCTGTATCACCTGCCT 57 88232317 88232336 AGGTAATGGGACTGATTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049887.1 ENSRNOG00000047686 ENSRNOT00000074492 2 1 1 60 5 142645640 142645662 CGCTGTATACTGTATTTATCGGG 59 142645682 142645700 ATACACAGATGCGGCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plek2 ENSRNOG00000010098 ENSRNOT00000014125 1 1 1 80 6 102084952 102084971 CGGGAAAGATCCAACAACTC 59 102083491 102084909 TGTCCACAATTCGATGCAG 59 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 2 2 2 80 7 143402864 143404911 TACCAGACCAAGTTCCAAGAG 60 143402804 143402822 AGAGATCTCGTTCCTGGTG 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995,ENSRNOT00000084066 1 2 2 94 10 13555951 13555969 ATTTGGTCCTGGATCCCTG 59 13555232 13555895 AAATAGAACCTGCTTAGGCTG 58 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 3 3 3 80 5 169281698 169285300 GAAAGATAGCAAGATGGACGT 58 169285342 169285360 CTCTCCGCTTTCTTCACAG 58 NA Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000027846 3 1 2 80 16 21142671 21143070 TTGATATCACAGCAAATCCCG 59 21143109 21143130 CTCTTGACAATACAGCTCTGAC 59 NA Rattus norvegicus 81 Snurf ENSRNOG00000054391 ENSRNOT00000088874 3 1 1 84 1 195091247 195091265 GAACTACTGAACAGCACGT 58 195087603 195091199 AAGTGACACTCTTGGTTGC 58 NA Rattus norvegicus 81 Ccdc50 ENSRNOG00000001930 ENSRNOT00000002649 2 1 1 80 11 76783621 76783639 AGGAAATCCAGGAGAAGCT 58 76771393 76783577 AAAGACGTGCTATGTCCTC 57 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 2 4 4 80 15 8895307 8898162 ATGTCTTCAGATCGCCCAG 60 8895245 8895263 GTGTTCAAAGGCCAACAGG 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 3 4 4 80 15 8895312 8898168 CTGCTGATGTCTTCAGATCG 59 8895251 8895269 AAAGGCCAACAGGAAACTG 59 NA Rattus norvegicus 81 Cd72 ENSRNOG00000017485 ENSRNOT00000060442 1 1 1 80 5 58945000 58945575 TTCCCTACAAGATTCTCTGCC 60 58944940 58944958 TGGCTCATCTGCTCAATCC 60 NA Rattus norvegicus 81 LOC680700 ENSRNOG00000011484 ENSRNOT00000015278 2 1 1 148 5 139933532 139933550 ACTGTGATGAAGTCAAGGC 58 139933291 139933310 GATCAGAGACTCAGAGACCA 58 NA DesignNoJunction Rattus norvegicus 81 LOC680700 ENSRNOG00000011484 ENSRNOT00000015278 3 1 1 148 5 139933531 139933549 CTGTGATGAAGTCAAGGCC 59 139933290 139933309 TGATCAGAGACTCAGAGACC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0712.1 ENSRNOG00000051290 ENSRNOT00000076792 2 1 1 60 X 70234952 70234974 CTACCCTCAATGTATCTGTTGTG 59 70234993 70235012 TCATACTTGGCAGGTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311084 ENSRNOG00000018486 ENSRNOT00000024953 3 1 1 83 3 9630418 9630437 TAAGAACCTTCCTGGACACC 59 9630045 9630373 GAAAGGATTCCAGCTTCTGG 59 NA Rattus norvegicus 81 Rpap3 ENSRNOG00000053405 ENSRNOT00000083926 2 1 1 80 7 139175763 139175782 TGTCTTTCTTGACTCCACAC 58 139173640 139175720 TTGAGTGCTTTAGGTGACC 57 NA Rattus norvegicus 81 LOC102555599 ENSRNOG00000050957 ENSRNOT00000071564 2 1 1 60 3 76114278 76114297 GGCTACCTTCAATGAGAGTG 58 76114237 76114258 GAGGATAAACAAGTAGGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cwc25 ENSRNOG00000004091 ENSRNOT00000005426 3 1 1 81 10 85691751 85692216 GCTTACAGGTGAGGGACTC 60 85691688 85691707 CGGGAATGGTTCTTTACTGC 59 NA Rattus norvegicus 81 RGD1561671 ENSRNOG00000028997 ENSRNOT00000046385 1 1 1 80 17 11915806 11915828 TACTACAAGTACAAGTACCCTCG 59 11915548 11915768 CAGGATCAGCTTCTTGTACTC 58 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 2 2 2 80 1 265788827 265788847 CCATATGGTAACCAGACAGAC 58 265788667 265788786 GAGATTGTCACACTCCTCTG 58 NA Rattus norvegicus 81 AABR07053379.1 ENSRNOG00000047116 ENSRNOT00000073004 3 1 1 60 3 103597827 103597848 TTCATCCTGATTGTGTCTTACC 58 103597868 103597887 CACCTGAGGAGTGTTTACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab11fip4 ENSRNOG00000014135 ENSRNOT00000018986 3 1 1 80 10 67038410 67038429 GCTGCAAGAAGATCAACCTG 60 67038471 67038729 AGATCTTCCTGTTGGGACTG 59 NA Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 2 2 2 80 3 176546370 176546391 TAGCCAATATCTCAGATGTGGT 59 176542926 176546329 TCTGGTTCTTCTCGTCCAC 59 NA Rattus norvegicus 81 Ptrhd1 ENSRNOG00000004059 ENSRNOT00000005402 3 1 1 96 6 28663790 28663808 ACCTTCATCGAGACCATCC 59 28666338 28666356 TTCAAGGTGGTCTCATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 1 2 2 109 17 31494557 31494575 TGATAAGCGATGAGCATGG 58 31494648 31494916 ATATTTGTTGCCAGCAGCT 58 NA Rattus norvegicus 81 Zfp593 ENSRNOG00000016392 ENSRNOT00000021937 3 1 1 136 5 152464640 152464658 ACCTGGATGAGATCCATCG 59 152464297 152464540 ATCGATGAAGTACCTCGCG 60 NA DesignRelaxed Rattus norvegicus 81 Zp4 ENSRNOG00000027506 ENSRNOT00000038938 1 1 1 80 17 65501875 65501894 CATCAGCGCTTCAGTATCTC 59 65501937 65502235 CAGGTATACCTGTCCACCC 59 NA Rattus norvegicus 81 Rpl19 ENSRNOG00000004741 ENSRNOT00000006359 2 1 1 80 10 85980989 85981315 GACCGTCATATGTATCACAGC 59 85981356 85981375 GATGTGCTCCATGAGAATCC 59 NA Rattus norvegicus 81 AABR07011698.1 ENSRNOG00000028120 ENSRNOT00000035482 3 1 1 88 2 166330807 166330827 TTTATGTTTGTCCGGTGGAG 58 166330738 166330756 CTCCAGAGCTTCATTCCCT 59 NA Rattus norvegicus 81 LOC100911107 ENSRNOG00000048358 ENSRNOT00000070876 3 1 1 80 17 32012023 32012229 TCCGACTGAACAAGAAAGAC 58 32011962 32011982 GATCAGGAATGTAGCCAAAGG 59 NA Rattus norvegicus 81 Sec11c ENSRNOG00000017036 ENSRNOT00000022958 1 1 1 80 18 61498496 61498514 TCTGCGCTCATGATATGGA 59 61498557 61501573 CATACTGCCACTCAGTACCA 59 NA Rattus norvegicus 81 Sec11c ENSRNOG00000017036 ENSRNOT00000022958 3 1 1 80 18 61498495 61498513 TTCTGCGCTCATGATATGG 58 61498557 61501572 ATACTGCCACTCAGTACCA 58 NA Rattus norvegicus 81 Preb ENSRNOG00000007141 ENSRNOT00000009565 3 1 1 80 6 26785532 26785552 GCTTCAACCATGATAACACCC 60 26785592 26785785 TCTCTAGGCTAGGTACCTTCC 60 NA Rattus norvegicus 81 Olr262 ENSRNOG00000009748 ENSRNOT00000012919 3 1 1 60 1 172615833 172615851 TTATGTGATGCCCAAGTCC 58 172615791 172615810 GTAGAACACAGACACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srcin1 ENSRNOG00000011475 ENSRNOT00000016070 3 1 1 80 10 85469507 85469626 ACTCAAGGCTCATTTCCCA 59 85469445 85469464 TTCAGAAACTTGACTGCCTC 58 NA Rattus norvegicus 81 Sh3bp5l ENSRNOG00000054400 ENSRNOT00000086218 3 1 1 95 10 43769795 43775679 TAGGATACAGGAGGAGCTG 57 43775881 43775899 CTCCGATAGGTAGTCCTGG 58 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169,ENSRNOT00000067393 1 2 2 80 14 115424221 115426735 TTTCATCTGGTGCAAATGTC 57 115426778 115426796 TTGTATGACCCTCTTGTGC 58 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 1 2 2 80 8 6057026 6057045 AATCAAAGGCCAAGAGTTCG 59 6056210 6056987 GAGTCTGACGTAGATAATAGCTG 58 NA Rattus norvegicus 81 Mrgprx2l ENSRNOG00000022729 ENSRNOT00000030162 2 1 1 60 1 103810581 103810602 GTGATTACTATCTTCTGTGGCT 58 103810542 103810560 CAATGACCACATACAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 2 2 2 80 X 122626420 122626440 AGATACACAGCTATCTCGGTC 59 122626482 122628074 TTGCTGGTTCTTGTGTTGG 59 NA Rattus norvegicus 81 LOC100912371 ENSRNOG00000049321 ENSRNOT00000071145 2 1 1 60 4 1730343 1730363 ACTGAATTCTCACCTTCACAC 58 1730380 1730403 GTCTATGAGGGACAAGTTAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a7a ENSRNOG00000033352 ENSRNOT00000051365 1 1 1 104 2 190058190 190059273 AGCAACAGACTCTCCACTG 59 190059341 190059359 GGAGTCCTCTACTGGTGTG 59 NA InUTR Rattus norvegicus 81 Tbx18 ENSRNOG00000010685 ENSRNOT00000014657 3 1 1 80 8 95369948 95369968 ATTACTCGCCTGAAGATAGAC 57 95364099 95369906 AGCTTCCAAACCCATTCTG 58 NA Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 1 1 1 60 2 190073921 190073941 CTCTACAGGGATGACTTCAGG 59 190073962 190074144 TATTCTGCACAAACTGAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Gpc2 ENSRNOG00000001367 ENSRNOT00000001849 2 1 1 80 12 19596818 19597527 CCTCCGCCTACAGATAACC 59 19596756 19596774 CTGACCACATTTCTTCCGG 59 NA Rattus norvegicus 81 Rn60_5_1052.2 ENSRNOG00000051168 ENSRNOT00000076789 3 1 1 60 5 101119898 101119919 GAAGCAAAGTATGCACAAACAC 59 101119859 101119877 ATGCAGATTCTGGACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360940 ENSRNOG00000008548 ENSRNOT00000011308 2 1 1 85 5 147607722 147607743 AGAATTGATAAGACCATGGCAC 59 147607786 147607843 GCTCTGATTTCTGAGCAATAGG 59 NA Rattus norvegicus 81 AC130035.1 ENSRNOG00000042235 ENSRNOT00000067227 3 1 1 84 5 172882843 172883058 ACAGAAATAGTTGGCACTCAG 58 172883104 172883122 CTTTCCCAGGGAACATGAG 58 NA Rattus norvegicus 81 Rn60_13_0816.1 ENSRNOG00000051095 ENSRNOT00000076020 2 1 1 60 13 76626445 76626465 TGGACCAGATATTTGAGACCC 59 76626487 76626505 GAGGAGAGTTGCTCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002854.1 ENSRNOG00000047624 ENSRNOT00000072441 2 1 1 89 1 87154871 87154889 TAGACTCGCCAGTTGATCC 59 87153857 87154719 ATGCATATACCTCTCCCGG 58 NA Rattus norvegicus 81 A1bg ENSRNOG00000004692 ENSRNOT00000006273 2 1 1 80 7 102296889 102296908 CCGTATGCACAAATACATGC 58 102296366 102296846 GCTGGTAGTTTCTCGTCAC 58 NA Rattus norvegicus 81 Epha4 ENSRNOG00000013213 ENSRNOT00000041689 2 1 1 80 9 83132093 83132111 GCAGTTCGAGAATTTGCCA 59 83131525 83132050 TTCTCCAAATTCGCCAACTC 59 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 3 1 1 62 13 42261362 42262688 GATTGTTCTGGCTTCCAGG 59 42261318 42261337 GCTGAAATTCTTCACACTGG 57 NA DesignNoJunction Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 3 1 1 93 1 220417142 220417403 TTCAATCGAATCAGCCAGG 58 220417458 220417478 CCTTGAATCCCTTATGAACCA 58 NA DesignNoJunction Rattus norvegicus 81 Car14 ENSRNOG00000023162 ENSRNOT00000025523 1 1 1 80 2 198010603 198011220 CTCAGAAGATTAGGAGGAAGAGG 60 198010545 198010563 TTCATGCCTCTGTGGTAGC 60 NA Rattus norvegicus 81 MAST1 ENSRNOG00000003469 ENSRNOT00000004646 2 1 1 80 19 26035868 26037934 ATGGAGTATGTGGAAGGTGG 59 26035807 26035826 ATACATTCGAGCCATCTCCA 59 NA Rattus norvegicus 81 Pik3r2 ENSRNOG00000019228 ENSRNOT00000026210 2 1 1 80 16 20422135 20422273 CATTTCCAGGGAAGAGGTG 58 20422317 20422335 ATCTTGCTGGATGCATCTC 58 NA Rattus norvegicus 81 LOC100359802 ENSRNOG00000038520 ENSRNOT00000058749 1 1 1 80 17 66667631 66667652 AAAGTAAGTGAAGTGCAGAGTC 59 66665708 66667592 CAAAGCAGTTCTGTTGTTACC 58 NA Rattus norvegicus 81 Hypk ENSRNOG00000015703 ENSRNOT00000021091 3 1 1 92 3 113424606 113424765 GGAGTTGATAATGACAGAAATGGAG 60 113424815 113424833 GCAATAAGAGCCTCCACCA 60 NA Rattus norvegicus 81 Mrpl45 ENSRNOG00000010540 ENSRNOT00000014752 3 1 1 80 10 85266678 85266696 TCTTCAGGTCTGGTGAACC 59 85266740 85268122 ATAAATGGCCAACGTCTGC 59 NA Rattus norvegicus 81 Cuedc2 ENSRNOG00000019574 ENSRNOT00000026609 1 1 1 81 1 266078874 266078892 GAAGAAGCTGTGCAGATGC 60 266078672 266078832 GTCTGGGTAAATCCTGATTTGG 59 NA Rattus norvegicus 81 Egln3 ENSRNOG00000005053 ENSRNOT00000007219 1 1 1 90 6 75055993 75056011 GTTCGTCATGTGGACAACC 59 75055128 75055939 CTCCATGTAACTTGGCGTC 59 NA Rattus norvegicus 81 Tomm22 ENSRNOG00000014058 ENSRNOT00000019323 2 1 1 80 7 120901995 120902014 GAAGAATTGGTCCCGAAAGC 60 120902057 120902239 GGTCTCATCTAGCTCGTCG 60 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000077291 2 1 4 61 20 2501335 2502702 GAAGCCATTCCATCTGCAC 59 2502724 2502745 TCTTGGAGAAGACGTTACTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Akr1c19 ENSRNOG00000038319 ENSRNOT00000058351 1 1 1 80 17 69662777 69664055 CAATGCAAATGAAGTCGGG 58 69664099 69664117 CACAGAGATCCACTGTGTC 58 NA Rattus norvegicus 81 Vom1r47 ENSRNOG00000034101 ENSRNOT00000051024 1 1 1 60 1 67025565 67025583 CAATCAGTCCCAGCAACTC 59 67025605 67025625 CCAATATACTTCACCGCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pspn ENSRNOG00000049171 ENSRNOT00000071188 2 1 1 92 9 10044827 10044845 TGATCTTCAAGAGGCTCCT 58 10044901 10045007 TTGTTGTTACCCTGATGGG 57 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076194 1 1 2 87 12 29266760 29267954 CTTCATCCAGAATGGAGCCA 60 29268004 29268022 GATTAGGTCGATACCGGCC 60 NA Rattus norvegicus 81 Slitrk3 ENSRNOG00000009821 ENSRNOT00000013009 1 1 1 78 2 170460451 170460469 GAACCTCGGAGATCCTGAG 59 170455660 170455679 CATCTCAGTTATGGTTGGCT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grm2 ENSRNOG00000013171 ENSRNOT00000017607 1 1 1 85 8 115347189 115348930 ATTATCGGGTGCAGACCAC 60 115347122 115347140 CAACTTGGGTGCAAAGAGG 59 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 3 2 2 80 5 160017220 160017474 GAGGATGACAGTGGAAACAG 58 160017159 160017177 GTCTGGCTTACGACATCCT 59 NA Rattus norvegicus 81 3082ex4-5 ENSRNOG00000052365 ENSRNOT00000084179 3 1 1 60 20 2493714 2493732 ATGTGACCCATCATCCCAG 59 2493755 2493774 GAATTCAGCAGGGTAGAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034069,ENSRNOT00000034075 3 2 2 80 18 61788774 61788792 GTGCTATCCAGGATACCGA 58 61787192 61788731 GCACACTCATCGATATCCAG 58 NA Rattus norvegicus 81 Dcx ENSRNOG00000047712 ENSRNOT00000074322 3 1 1 80 X 115113717 115113736 CTCAACACCTAAGTCGAAGC 59 115106384 115113674 AGGTACAAGTCCTTGTGCT 59 NA Rattus norvegicus 81 RGD1562409 ENSRNOG00000029423 ENSRNOT00000047713 3 1 1 90 3 59166129 59166347 TTAAAGCCCTCTTCCAAGG 57 59166057 59166076 CAAACAAAGGATTGACCACC 58 NA Rattus norvegicus 81 Rgag4 ENSRNOG00000045779 ENSRNOT00000073685 1 1 1 60 X 71960040 71960059 TCTACCTGGCTGAATTTCTG 57 71959999 71960017 AAGTGTTCCTCGTGATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hcfc2 ENSRNOG00000053510 ENSRNOT00000086905 3 1 1 80 7 27116074 27119427 ATAACAGTGTTAGTGATCCAGC 58 27116015 27116034 TGCTCTTCAGTGACATTCCT 59 NA Rattus norvegicus 81 Pxk ENSRNOG00000008024 ENSRNOT00000010763 2 1 1 80 15 18577451 18577470 CAGGTTTCCATGTTCTTCCG 59 18576837 18577413 CTTCCTTATTCTCCAACCTATGTC 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015075 1 1 2 80 4 132157655 132167595 CCTGACTCGGAAAGTTCCA 59 132157593 132157613 GTCCTTAAACATGCCAAACCT 59 NA Rattus norvegicus 81 Armc4 ENSRNOG00000018905 ENSRNOT00000025585 3 1 1 80 17 60431173 60431192 AAAGACCAGGAGAACTTAGC 57 60431233 60433161 GTCGTTATTTGTATTGGCGAG 58 NA Rattus norvegicus 81 Casz1 ENSRNOG00000013474 ENSRNOT00000018000 2 1 1 80 5 165759098 165759116 TTGCAGCGTCTACTACCAC 60 165759159 165760181 ACCTTGTTACATCCCACCTG 60 NA Rattus norvegicus 81 Fos ENSRNOG00000008015 ENSRNOT00000010712 2 1 1 80 6 109301676 109301694 TGGTGAAGACCATGTCAGG 59 109301735 109302161 CTTCCTCTTCAGGAGATAGCTG 60 NA Rattus norvegicus 81 Slc31a2 ENSRNOG00000013631 ENSRNOT00000019379 1 1 1 90 5 78120646 78120664 GAATCTCGAGCTGAGTCCC 60 78120718 78126811 GAAGATGAAGTGCATCGGC 59 NA InUTR Rattus norvegicus 81 LOC688754 ENSRNOG00000015161 ENSRNOT00000020399 3 1 1 81 18 51613655 51613673 GTGGACTTTGACATCGCTG 59 51613590 51613608 AATTCATCTGGTAGCCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Rbm4b ENSRNOG00000061795 ENSRNOT00000084410 3 1 1 81 1 220010465 220010483 GCCTTTGTACACATGGAGC 59 220010526 220015531 TTCGTTTGCCTTGAAACTCTG 60 NA Rattus norvegicus 81 Npas4 ENSRNOG00000020009 ENSRNOT00000027119 3 1 1 80 1 220263323 220263342 ACATGGATTTACTGCATGCT 58 220263142 220263280 TTCCGTGTCACTGATAGGG 59 NA Rattus norvegicus 81 Olr613 ENSRNOG00000045685 ENSRNOT00000047702 3 1 1 60 3 76345342 76345360 TCTTGTGATTCCCATGCTG 58 76345300 76345319 CTGTTTCACATCCTTGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btnl7 ENSRNOG00000050170 ENSRNOT00000073990 1 1 1 80 20 2757795 2758158 TTCCAGACCTGGACTTTCAC 60 2757734 2757754 GGTCACTCTCATCCTATCCTG 59 NA Rattus norvegicus 81 Cabp7 ENSRNOG00000057703 ENSRNOT00000078179 3 1 1 89 14 84970552 84970693 TCTGGAAGTGTGACATGCA 59 84970481 84970499 TGTCCTTCATGGACAGGTG 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371,ENSRNOT00000041988 2 2 2 80 4 82809745 82809765 TTCAATAAACACAGACCCAGC 59 82809807 82812316 AAATCTGTCTCTGCTGCAC 58 NA Rattus norvegicus 81 Kctd6 ENSRNOG00000007817 ENSRNOT00000010303 2 1 1 80 15 18485950 18487954 GAGACTGGAGCTATATGATGAC 58 18485891 18485910 TCAACGTGGTAAGAGATGTC 57 NA Rattus norvegicus 81 Olr552 ENSRNOG00000045627 ENSRNOT00000046688 1 1 1 60 3 75234565 75234583 ACCCTCTGATTTACAGCCT 58 75234523 75234541 AACATCAACTTCTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0735.2 ENSRNOG00000051269 ENSRNOT00000076628 2 1 1 60 X 72611769 72611787 AAAGTCTGCTTTGCTGGTG 59 72611808 72611829 TAATGGGCCTTTCATACTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr790 ENSRNOG00000050791 ENSRNOT00000046527 1 1 1 60 3 103400020 103400041 TGTCCCAAGATGATTTATGACC 58 103399981 103400002 TGCAACCATTAAAGGAGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr3 ENSRNOG00000042605 ENSRNOT00000064917 2 1 1 60 1 59801538 59801556 CAAGATCCACAGAAGAGCA 57 59801496 59801514 AACTGCTGTAAGGACTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561738 ENSRNOG00000042995 ENSRNOT00000068548 1 1 1 60 13 73661278 73661296 GTGATCAACATGCCCAGAG 59 73661320 73661338 TGTTGAACAGGGACCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912127 ENSRNOG00000050448 ENSRNOT00000074489 1 1 1 60 4 1557710 1557729 ACAATAACAGGGAACTTGGG 58 1557749 1557770 GGGTATGAAGGTGTGAATTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 2 4 4 81 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238104 122238123 CAATCAGCTCTGTCTTGGTG 59 NA Rattus norvegicus 81 Tgm6 ENSRNOG00000006830 ENSRNOT00000009097 1 1 1 80 3 122663758 122663776 GACAGTGGCATCATCTTCC 58 122663819 122665272 GATGTCCTCTTCAAACTGCC 59 NA Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000044726,ENSRNOT00000085175 1 2 2 80 14 92035869 92036477 CTTCAAAGGAACCCAGACAC 59 92035808 92035826 GCTTCTTTCCGGCAATCAG 60 NA Rattus norvegicus 81 Olr987 ENSRNOG00000050676 ENSRNOT00000048882 3 1 1 60 4 13565501 13565520 ATCACAGAGTTCTACCTCCT 57 13565460 13565479 GTTTGCAGATGGCTACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 2 2 2 85 19 52533160 52533178 AATGGAGCCCTGTCTTCTG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 RGD1562339 ENSRNOG00000001767 ENSRNOT00000002408 1 1 1 102 11 83048816 83093832 TGGTGTCACTGCAAATATGTG 59 83093896 83093914 TTTGAATGGTGTTGGTGGG 59 NA Rattus norvegicus 81 Scnn1b ENSRNOG00000030981 ENSRNOT00000067138 1 1 1 80 1 191875848 191875869 CAACTGCTACATCTTCAACTGG 60 191875907 191877621 AACTTGAGACCAAATTCAGTCC 59 NA Rattus norvegicus 81 Vsx1 ENSRNOG00000042220 ENSRNOT00000061469 2 1 1 84 3 146487402 146488390 GGATACAGGTCTGGTTCCAG 60 146487337 146487355 TACTCAGCCATCACACTGC 60 NA Rattus norvegicus 81 Gpr31 ENSRNOG00000039255 ENSRNOT00000060121 3 1 1 60 1 53520618 53520637 TCTACCTGTTCAACCTGGTG 59 53520577 53520595 GCTAAGAATGGCAGACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 1 2 2 80 5 33177432 33177450 TGGAAATCGGTCCAGTGAG 59 33176950 33177297 AAGAGTGAGTGATGTATCCCAG 59 NA Rattus norvegicus 81 Angel2 ENSRNOG00000003795 ENSRNOT00000005084 1 1 1 80 13 109511753 109513567 GGAATCACTGGGTTATCACTG 59 109513608 109513627 GAATGTTTGAAGCAGATGGC 58 NA Rattus norvegicus 81 Plet1 ENSRNOG00000024346 ENSRNOT00000059210 3 1 1 80 8 54930358 54930377 CTAAACAACTCAGCCTTCCA 58 54930418 54932614 AATGAAGATCGTCAGGTTGAC 59 NA Rattus norvegicus 81 RBMY ENSRNOG00000060963 ENSRNOT00000092110 1 1 1 80 Y 389471 389492 AACATCTAGAGGATACCGTGAC 59 389532 389628 CCAGCATGATCACTGAAGAC 59 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310,ENSRNOT00000040188 3 3 3 80 3 146379642 146380058 GGCCAGGATACGAAGAGTC 60 146379580 146379599 GGAAATCCAGGCATGTTCTC 59 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 2 2 2 80 12 16918364 16918488 GCAAACCTATCAGGTCCAG 58 16918530 16918550 AGAAGCGTAAGAAAGTGATGG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 2 2 2 80 1 141641730 141641750 TGTGGAGACTCTGGATAAGTG 59 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000020602 ENSRNOT00000027980 3 1 1 114 16 21281175 21281194 AATAATGAGGTGGAACCGGG 60 21281930 21282035 AAGAATCTGCAGGGTCCTG 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368 3 1 2 98 18 52033277 52036401 TTATTCACAAAGCACCCATGC 60 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368,ENSRNOT00000077491 1 2 2 60 18 52036394 52036413 CCTGTGCTGACCTTATTCAC 59 52032615 52032633 TTTCGGGAAGTGTGATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Blnk ENSRNOG00000013967 ENSRNOT00000019014 1 1 1 80 1 260229578 260229596 TTCCTCGAAGGGACTATGC 59 260223092 260224944 TTTCATAGTCGCTGTCAAAGTC 59 NA Rattus norvegicus 81 Olr604 ENSRNOG00000005880 ENSRNOT00000007712 2 1 1 60 3 76135060 76135081 TTTACACAGTAGTCATGTCCCA 59 76135021 76135042 CATGTATAGGATCCCATCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363064 ENSRNOG00000001027 ENSRNOT00000042857 3 1 1 81 12 2716571 2716589 GTCACATTGGAAGACCAGG 58 2716633 2716763 TCAGATGTCCTTGCAAACTC 58 NA Rattus norvegicus 81 Obp2a ENSRNOG00000042407 ENSRNOT00000064745 3 1 1 83 3 2910101 2910119 CCTTACCGTCCTGCTACTG 60 2910165 2910710 GTCCCAGAGTAATCCTCCTG 59 NA Rattus norvegicus 81 Cxcl11 ENSRNOG00000022298 ENSRNOT00000031667 1 1 1 80 14 17197008 17197121 AGTTGAAGTGATTGTTACCCTG 59 17197162 17197180 ATTATGAGGCGAGCTTGCT 60 NA Rattus norvegicus 81 Flii ENSRNOG00000004159 ENSRNOT00000006753 2 1 1 80 10 46958473 46958568 GAATGAGGCTGTTGCAGAG 59 46958411 46958433 CAAGCCAGATGAATACATCAGAC 60 NA Rattus norvegicus 81 Abtb1 ENSRNOG00000015762 ENSRNOT00000021445 1 1 1 80 4 120781096 120781114 TCACCCTGCATGACATCTC 60 120779450 120781053 CAGGAGGTAGCTCAGTATGG 59 NA Rattus norvegicus 81 Cryba2 ENSRNOG00000017996 ENSRNOT00000024283 2 1 1 222 9 82154033 82154244 CACTCACTTGCGACATGAG 59 82153171 82153189 AGAATGAACTGCTGTCCCT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000080899 2 1 4 80 5 50231077 50239330 AGGAGATGCTAAGAACAAACCT 60 50231018 50231038 TGCAGATAACCAATGTAAGCC 59 NA InUTR Rattus norvegicus 81 Myrf ENSRNOG00000028274 ENSRNOT00000039133 1 1 1 80 1 226280780 226280800 GAGCCCTCCAATATAGACACC 60 226280616 226280738 GATCTCAGGGAAGCAGAGG 59 NA Rattus norvegicus 81 Asip ENSRNOG00000017701 ENSRNOT00000023905 1 1 1 103 3 150574520 150576283 TGTTTCCATTGTGGCACTG 59 150579480 150579499 CCACCTTCTTTATCGAAGCC 59 NA Rattus norvegicus 81 Asip ENSRNOG00000017701 ENSRNOT00000023905 2 1 1 104 3 150574520 150576283 TGTTTCCATTGTGGCACTG 59 150579481 150579500 GCCACCTTCTTTATCGAAGC 59 NA Rattus norvegicus 81 Asip ENSRNOG00000017701 ENSRNOT00000023905 3 1 1 107 3 150574520 150576283 TGTTTCCATTGTGGCACTG 59 150579485 150579503 CGTGCCACCTTCTTTATCG 59 NA Rattus norvegicus 81 Stab2 ENSRNOG00000038948 ENSRNOT00000059538 3 1 1 80 7 27371761 27372284 CAAGTTCCAATCAGAAGAGGAC 59 27371702 27371720 TCATACAGAGGGTTTGCGA 59 NA Rattus norvegicus 81 Marc1 ENSRNOG00000004101 ENSRNOT00000005459 1 1 1 80 13 102699586 102706783 GGAAACACTGAAGAGTTACCG 59 102699526 102699546 AAATATTGTCCGAAGGTGGGT 60 NA Rattus norvegicus 81 Lrrn4 ENSRNOG00000032989 ENSRNOT00000040802 3 1 1 81 3 125531497 125531515 CGCTTACTTCTGTCCACAC 59 125526406 125531453 GAGCTCAAGTTGCAATTCTG 58 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 1 2 2 80 1 189171374 189173014 AGTGTCAACCATCTTGCTC 58 189171312 189171331 GTCCTATATCCAGAACCCGA 58 NA Rattus norvegicus 81 Vps11 ENSRNOG00000010733 ENSRNOT00000065456 3 1 1 80 8 48686738 48688362 AAGGTTTCTCCCAAGTCGG 60 48686676 48686696 GCACAGGTCATAGATGTTGAG 59 NA Rattus norvegicus 81 Zc2hc1c ENSRNOG00000027115 ENSRNOT00000009156 3 1 1 77 6 109112660 109112679 GAGCAGTACTTGAACTGGAG 58 109118920 109118938 CTTCTGTCTCCAGGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Rps2-ps1 ENSRNOG00000058852 ENSRNOT00000078525 2 1 1 60 20 3159509 3159529 TTTGATGCCATCTTCAAGACC 59 3159469 3159488 ATCAATGTTCCAGAGGTCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr12 ENSRNOG00000039832 ENSRNOT00000061129 2 1 1 60 12 10256668 10256689 GTACAATTCCATCATCAACCCT 59 10256710 10256728 GGCTTTCTGGATCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031,ENSRNOT00000010367 1 2 2 80 X 127564105 127636119 TGACTAATGCTTTCTGCTCC 58 127636161 127636180 GGGTGTTCATTGACATCTGG 59 NA Rattus norvegicus 81 Phyhip ENSRNOG00000010555 ENSRNOT00000014441 1 1 1 60 15 52775283 52775303 CCATCACAAGGAGTACTTCCA 60 52776679 52776700 GTAAGGCTGTAGTACATTCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Olr607 ENSRNOG00000050737 ENSRNOT00000007782 3 1 1 60 3 76250477 76250496 CTTGTTAGCAGTTATGGCCT 58 76250436 76250457 AGTATACAGCAAGGGATTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep72 ENSRNOG00000015465 ENSRNOT00000020780 1 1 1 80 1 31859227 31859248 GTACAATGTGAAACAGGAAGTG 58 31859288 31862585 ATACTTGTCTGAAGTCCGGT 59 NA Rattus norvegicus 81 Cep72 ENSRNOG00000015465 ENSRNOT00000020780 2 1 1 80 1 31837795 31837814 TCTGATGCATTTGACAGCTC 59 31837856 31838824 ACGAGATACTGTATGCCCTC 59 NA Rattus norvegicus 81 Cep72 ENSRNOG00000015465 ENSRNOT00000020780 3 1 1 80 1 31854902 31854920 CTTGTCTCACTCTGAGGCT 59 31854962 31855981 AGTTTAGGAGACAGCACTCTG 60 NA Rattus norvegicus 81 Slc7a10 ENSRNOG00000010938 ENSRNOT00000015205 3 1 1 80 1 91445422 91446121 CCCTCGAAAGAACCTACCTC 60 91446162 91446182 TAGGCAACATTGGTGAATGTG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 1 2 2 80 4 77277922 77278629 CAAACTACTGATTCAGGCGG 59 77278671 77278690 ACTTCACCAAGTAACTGCTG 58 NA Rattus norvegicus 81 Slc52a2 ENSRNOG00000032561 ENSRNOT00000047380 2 1 1 88 7 117606904 117606922 CTACCTGATGACACTGGCA 59 117606974 117607097 GTACCCATGAAAGCACCAC 59 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 2 2 2 85 8 116100627 116101239 AGAGGCTGGAGAAGTTACG 59 116101288 116101306 TAGTTCCTGCTCCAGTTCG 59 NA DesignNoJunction Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 3 4 4 144 5 152682877 152683359 GGCATCTTCTGATATTCAGGT 58 152683465 152683483 TTCCTCCAGGGAAAGATCC 58 NA Rattus norvegicus 81 Fam71a ENSRNOG00000029371 ENSRNOT00000043672 1 1 1 60 13 109768723 109768743 ATAGAGACTACTGGAAAGCCT 58 109768683 109768701 AAAGGATGACTGGGACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd24 ENSRNOG00000006759 ENSRNOT00000008882 1 1 1 81 7 10922236 10922254 TAGTGGCTTCCCTACAGGA 59 10922073 10922191 TCCTCAAGGATCTGGACCT 59 NA Rattus norvegicus 81 Wwp1 ENSRNOG00000006328 ENSRNOT00000009047 1 1 1 80 5 33635618 33636779 GTCATCGGTAACTAAAGGTGG 59 33635558 33635576 CACAAGTAACGGAAGTGGG 59 NA Rattus norvegicus 81 Flt4 ENSRNOG00000002511 ENSRNOT00000003519 3 1 1 80 10 35106689 35106707 CCATGGAGGACCTTGTCTG 60 35106751 35107166 CTCTGTGAATGCACTTGCG 60 NA Rattus norvegicus 81 Rps6ka4 ENSRNOG00000021117 ENSRNOT00000028678 1 1 1 80 1 222095590 222095828 TTCCTGACTGAGGAGAAAGAG 59 222095530 222095549 CTTGCTTCGGATGATTTCGG 60 NA Rattus norvegicus 81 Olr629 ENSRNOG00000047271 ENSRNOT00000044692 2 1 1 60 3 76695259 76695277 TCCCATGTTCAACCCTCTG 59 76695217 76695237 TCTCAAGGCATTCTTCATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 1 2 2 80 19 39386429 39389315 CAATTCATGCCAAAGTTCCT 57 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 80 8 72479957 72479980 AGAAGAATAAGTGGTACATCCTCC 60 72477101 72479922 AGTGAGGACTTAGTAAAGTCTGG 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256,ENSRNOT00000080524 1 2 2 80 9 82724354 82724482 GAGCTCCGTAAGCTCTATCTG 60 82724524 82724542 TGACAAGTACTGAGCGGTG 60 NA Rattus norvegicus 81 C1galt1c1 ENSRNOG00000002536 ENSRNOT00000003449 1 1 1 80 X 124922924 124926075 ATTCTAGATGCGGAAACATGC 59 124922864 124922882 TCAAGGCACAGAAGATGCT 59 NA InUTR Rattus norvegicus 81 Dnpep ENSRNOG00000019772 ENSRNOT00000026799 1 1 1 80 9 82509188 82510136 TCTACGACAATGAAGAGGTGG 60 82509128 82509146 AGATGCGCCGTAGTATCAG 60 NA Rattus norvegicus 81 Epgn ENSRNOG00000002782 ENSRNOT00000003720 1 1 1 80 14 18630910 18634150 CTTAACATCACAGAAGCTGAC 57 18630850 18630871 ACTATTATGGTCTTCCAGACAG 57 NA Rattus norvegicus 81 Epgn ENSRNOG00000002782 ENSRNOT00000003720 3 1 1 80 14 18630833 18630854 ATAGTTACTGCATTAACGGAGC 59 18629781 18630796 CCGTATAACCAGTAAAGCATCTG 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000025731,ENSRNOT00000051067,ENSRNOT00000025700 2 4 4 80 17 70702960 70702978 TTGGTCATCTGTCACCAGG 59 70703021 70703377 CAGGTATGGCATCTCCTCTG 60 NA Rattus norvegicus 81 Mmp11 ENSRNOG00000028344 ENSRNOT00000031400 2 1 1 81 20 13674821 13674930 TTGACTTCACCAGGTACTGG 59 13674974 13674992 TTAGGGAAGAAGGCATGGG 59 NA Rattus norvegicus 81 Galnt16 ENSRNOG00000004589 ENSRNOT00000006460 3 1 1 80 6 104229843 104229862 CCCATCATTGACGTCATCAG 59 104229905 104232077 ACTCCAGTCGAATCCTCCT 60 NA Rattus norvegicus 81 Trim21 ENSRNOG00000018517 ENSRNOT00000024992 2 1 1 80 1 167689269 167689575 GACCTGTTGGGTTCATATTACTC 59 167689211 167689229 CTCACTTGTCTCCGATCCT 59 NA Rattus norvegicus 81 Tbc1d9b ENSRNOG00000003050 ENSRNOT00000043085 1 1 1 80 10 35654829 35654851 CCTATAACTACATCTGCTTTGCC 59 35654891 35656372 CAACAATGGTCACCTCCCT 60 NA Rattus norvegicus 81 Esrrb ENSRNOG00000010259 ENSRNOT00000013867 2 1 1 80 6 110452658 110452677 GGTACAAGAAGCTCAAGGTG 59 110452717 110455673 TGTACATTGAATCTGAGTTGGC 59 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 1 2 2 80 5 157751742 157751935 CAGGCAATAAGCCCTTCAC 59 157751680 157751698 TTGAGAGCAGGTACAGCAC 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 2 2 2 80 8 5994194 5994413 CTGTAACGGTTTCAGCAACC 60 5994454 5994474 CTATACCACCAACAAAGCTGC 60 NA Rattus norvegicus 81 Loxhd1 ENSRNOG00000017410 ENSRNOT00000023487 1 1 1 80 18 73734867 73735933 GAAAGATAACAACGGGATGAC 57 73735974 73735993 AAGATTTCAATGCTGTCCCT 58 NA Rattus norvegicus 81 Nmnat3 ENSRNOG00000013585 ENSRNOT00000018411 3 1 1 131 8 106371057 106417036 CCAGACAGGAAAGTACCAGG 60 106417129 106417148 ATCCAGTCAGATGTCTGCAG 60 NA Rattus norvegicus 81 Cep295nl ENSRNOG00000033143 ENSRNOT00000046213 2 1 1 99 10 107376575 107376593 GAAGTTATCATCACGGGCC 58 107365137 107365155 CTTCATCTTCGGAAGAGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ppbp ENSRNOG00000002829 ENSRNOT00000003794 1 1 1 80 14 18852710 18852730 ATCCCACTGAACTCTATCTCC 59 18852526 18852668 CAGTGTGGCTATCACTTCC 58 NA Rattus norvegicus 81 Serbp1 ENSRNOG00000005890 ENSRNOT00000009503 3 1 1 88 4 98038052 98042051 AAAGTGAAGAGGCTCATGC 58 98042102 98042121 ATTGATCTCCAGTTGAGACG 58 NA Rattus norvegicus 81 LOC102553939 ENSRNOG00000045837 ENSRNOT00000041664 2 1 1 80 19 321602 321623 AACTTAGAGATGGAGAACACTG 58 321663 322315 GAGCAGGTTTCTAGAGAAGG 57 NA Rattus norvegicus 81 Tfap2c ENSRNOG00000005246 ENSRNOT00000006991 1 1 1 87 3 170550563 170552114 AAGAGGATTGCGAGGATCG 60 170552165 170552183 CTGTAGAGATGCTGTCCCG 60 NA Rattus norvegicus 81 Afm ENSRNOG00000002878 ENSRNOT00000060535 1 1 1 80 14 19082148 19082167 CACTTGTATCTGCTTTGCGT 59 19080746 19082106 TGACCAGAAACCTGTGTCTC 60 NA Rattus norvegicus 81 RGD1561415 ENSRNOG00000017867 ENSRNOT00000024125 3 1 1 81 19 37675378 37675634 CAGAGATCCCTGAGTGTCC 59 37675679 37675697 CACCTGTCTTCACCTGGAG 60 NA Rattus norvegicus 81 Slc7a5 ENSRNOG00000018824 ENSRNOT00000025784 3 1 1 80 19 54699255 54699274 TGGATCATTCCTGTCTTCGT 59 54698862 54699213 GAAGAACAGTCTTGAGGACG 58 NA Rattus norvegicus 81 Dnaaf2 ENSRNOG00000028155 ENSRNOT00000059187 3 1 1 85 6 91482775 91485641 CAGATCCATGCGAAGTTGC 60 91482708 91482732 CTTAGAGGACATTCTTCTTTGACTC 59 NA Rattus norvegicus 81 Pomc ENSRNOG00000012686 ENSRNOT00000016976 1 1 1 152 6 28386266 28386284 CCTCCATAGACGTGTGGAG 59 28388145 28388163 TCAAGGGCTGTTCATCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v1g1 ENSRNOG00000008163 ENSRNOT00000011508 3 1 1 69 5 79371686 79371705 GAGGGAGAAGGAGTTCAAGG 60 79373117 79373135 CACCTCACTGCTACAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Ahsa1 ENSRNOG00000048981 ENSRNOT00000075425 2 1 1 80 6 111299847 111299865 CAGGAGTGCAGTACAAAGG 58 111299907 111300292 TCACACTAATCTCCACTTCGT 59 NA Rattus norvegicus 81 Eif3m ENSRNOG00000012738 ENSRNOT00000017409 2 1 1 80 3 94990266 94990709 GTTGTCAGTCACAGCACAC 59 94990204 94990223 CTGCTTCCAGGCATTAAGAG 59 NA Rattus norvegicus 81 Gna11 ENSRNOG00000005446 ENSRNOT00000007498 3 1 1 80 7 11045596 11046629 GAACATCATCTTCAGGATGGT 58 11046669 11046689 GTGACATTCTCAAAGCAATGG 58 NA Rattus norvegicus 81 Areg ENSRNOG00000002754 ENSRNOT00000003703 2 1 1 80 14 18529814 18529835 TACTCGGAGGAGTATGATAACG 59 18527359 18529778 CTTAATCACCTGTTCAACTCTGAC 60 NA Rattus norvegicus 81 Degs1 ENSRNOG00000003223 ENSRNOT00000004319 3 1 1 80 13 100669288 100672613 GGAGATCTTAGCGAAGTATCC 58 100669228 100669248 AGCATTGAGGTTACAATCCAG 58 NA Rattus norvegicus 81 Cela2a ENSRNOG00000013628 ENSRNOT00000018349 1 1 1 90 5 160382214 160382232 TTTCCTCTGGAAAGTGGCA 59 160381735 160382163 CTAGAGTTGCTGATACAATGGG 59 NA Rattus norvegicus 81 Ism2 ENSRNOG00000050312 ENSRNOT00000074480 1 1 1 80 6 111310570 111312220 GGATATGCTTGATTCAGATGTG 57 111310511 111310532 TGGCTCAGATACTTAGTTAGGA 58 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 3 2 2 80 1 84123003 84123021 AGTCATTGTGTCCTCACGG 60 84122126 84122961 GTTGGCATTCATCCACATCTC 60 NA Rattus norvegicus 81 Zdhhc22 ENSRNOG00000011285 ENSRNOT00000015046 3 1 1 96 6 111013713 111015555 GGAGCTGGGAATGTAATCGA 60 111013636 111013654 CAGTACGAAGGTCACCAGG 60 NA InUTR Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546,ENSRNOT00000089456 3 2 2 80 1 256653074 256659255 GGTTGTTGAGAAATACCAGC 57 256653013 256653031 CCAACATCTTGCAACATGG 58 NA Rattus norvegicus 81 Ceacam10 ENSRNOG00000050105 ENSRNOT00000027214 2 1 1 100 1 81643939 81644727 GACTACTGCTCACAGCCTC 60 81644791 81644809 GCTGTTCTCCTCAACAACG 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494,ENSRNOT00000089524 1 2 2 80 3 97401053 97401071 TCCTCTGTGTTTCAGGCTC 59 97401113 97402874 ATAAATCAGCCTTGGCAACAC 60 NA Rattus norvegicus 81 Cstf1 ENSRNOG00000004775 ENSRNOT00000055101 3 1 1 80 3 170385581 170385601 ATGCTTCCATCAAGATACTGG 58 170385640 170385795 CAGTCTCATTCATCATGACCTC 59 NA Rattus norvegicus 81 Dhrs11 ENSRNOG00000027891 ENSRNOT00000030841 2 1 1 81 10 72145022 72145042 ACACAGTTTGCCTTCAAACTC 60 72144769 72144982 CTGGTCTGAGACACTTTATGTG 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 3 1 1 60 9 85544903 85546056 CTGCACTGTTCATCAGGGA 60 85546078 85546098 ATCTCAAACAGCTCTTTCCCT 60 NA DesignNoJunction Rattus norvegicus 81 RGD1311517 ENSRNOG00000020199 ENSRNOT00000027347 1 1 1 81 5 173556914 173558769 TGCCACAGTCTTCAGTGAG 60 173558814 173558832 GAGAAGGCAGAAGGATCCC 60 NA Rattus norvegicus 81 Gpbar1 ENSRNOG00000058260 ENSRNOT00000089698 3 1 1 60 9 81559774 81559792 TACTAGCTGGGCTACTCAC 58 81559815 81559834 CTCCTATTCCATAGCCCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tc2n ENSRNOG00000004754 ENSRNOT00000006371 1 1 1 80 6 125569592 125569612 TTCACCTGATTTAAGTAGGCG 58 125568200 125569553 CTGGTCCTTAAATCACAAACAG 58 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 3 2 2 93 1 80307608 80307951 GAGATCCGTGAGAAGGTCC 59 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 LOC100361993 ENSRNOG00000022144 ENSRNOT00000003557 1 1 1 60 13 107580862 107580881 GACTTTGGCTGGCATTATGG 60 107580903 107580922 ACCTGCAGGCATAAATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bms1 ENSRNOG00000006576 ENSRNOT00000008741 3 1 1 80 4 150464708 150464728 TCACAGTTATGAAGTTTCGGC 59 150463781 150464669 TTGTCAAATCTTCCATCCTGTC 59 NA Rattus norvegicus 81 Afp ENSRNOG00000002889 ENSRNOT00000003879 3 1 1 80 14 19154312 19154332 CCTTCCACTTTCCAGAAACTG 59 19153135 19154274 CGTAGATGAACGTGTTTATGGAC 60 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859,ENSRNOT00000020705,ENSRNOT00000089142 3 3 3 87 9 90886980 90891870 TCAAAGCGAAGAGATCCGA 59 90891921 90891939 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Shisa8 ENSRNOG00000049407 ENSRNOT00000070937 2 1 1 84 7 123441711 123441729 TCCATCCTTGGGTAACTGC 59 123441103 123441663 ACGTTTCTTGTCTGTGCTG 59 NA Rattus norvegicus 81 Nfic ENSRNOG00000004505 ENSRNOT00000006168 2 1 1 80 7 11171299 11171319 GGAGACTACTACACATCACCC 59 11171361 11172770 GGATGAGATGCCTCCTTCC 60 NA Rattus norvegicus 81 Prf1 ENSRNOG00000000562 ENSRNOT00000000681 2 1 1 80 20 30920154 30920258 CCAAGTTGATGGAGATCAGGA 60 30920297 30920318 CATTCCCAAAGTCCATCTTGTC 60 NA Rattus norvegicus 81 Gucy1b3 ENSRNOG00000012060 ENSRNOT00000064930 1 1 1 80 2 180995792 180995811 CGCCCTCATATTGACATCAG 59 180994957 180995749 CAACCCTTCCTTGCTTCTC 59 NA Rattus norvegicus 81 Flrt2 ENSRNOG00000003732 ENSRNOT00000004955 1 1 1 80 6 119520016 119520034 ACCAGCTTCTTCCCTTTCC 60 119520076 119606779 GAGTCAGTAATCTGGTAGCCT 59 NA InUTR Rattus norvegicus 81 Actl9b ENSRNOG00000026033 ENSRNOT00000031286 3 1 1 60 8 4085928 4085947 GGTCACTTGATCTGAACCCT 60 4085970 4085988 CATGGTTCTTGTAGCGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000030102,ENSRNOT00000077117 1 2 2 80 16 2707302 2713497 CAGATATGACAACTGTACCACC 59 2713537 2713556 TGGCTAATGGTGATGTTCTG 58 NA Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000030102,ENSRNOT00000077117 3 2 2 80 16 2713547 2713566 CCATTAGCCAGTATGCTTGC 60 2713608 2717831 TCAGGAATTCAATGCCAAGG 59 NA Rattus norvegicus 81 Cxcl1 ENSRNOG00000002802 ENSRNOT00000003778 1 1 1 80 14 18745172 18745195 GATTCACTTCAAGAACATCCAGAG 60 18744997 18745133 AGTGTGGCTATGACTTCGG 60 NA Rattus norvegicus 81 Prss34 ENSRNOG00000018466 ENSRNOT00000024904 1 1 1 81 10 14657239 14657257 AATGGGAACACATCTGTGG 58 14657300 14657526 ATCTCTTTCAGCTCTACACAG 57 NA Rattus norvegicus 81 Vps51 ENSRNOG00000020996 ENSRNOT00000028495 1 1 1 80 1 221432472 221432490 TGGACTATGAGACAGCCAC 59 221432230 221432429 TAACAGGAGACTGATCCTGC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 2 2 5 81 9 43821828 43821850 GAGACAACTTTCAGTAAAGGACG 60 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Arf4 ENSRNOG00000012623 ENSRNOT00000017692 2 1 1 80 16 2351778 2353987 CGGAACAGAACATGGTATGTC 59 2354029 2354047 ATTTGACAGCCAATCCAGC 59 NA Rattus norvegicus 81 AABR07030053.1 ENSRNOG00000048453 ENSRNOT00000071102 1 1 1 94 10 64930082 64930101 AGCAAGGACTAGAGCTTCTC 59 64930159 64930177 CTTCCTTCTGGTCACCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Tceal8 ENSRNOG00000028585 ENSRNOT00000017138 1 1 1 182 X 106714938 106715381 CCTGCTACTTCCAGGACTC 59 106714178 106714197 TGAAGGATGGCCTTCATCTG 60 NA InUTR Rattus norvegicus 81 Tnn ENSRNOG00000002548 ENSRNOT00000076616 1 1 1 60 13 77887178 77887198 AGAGAAGTACAAGAAGCTGAG 57 77887138 77887159 TCATATCTACCCTTCACTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd2b ENSRNOG00000023508 ENSRNOT00000032664 3 1 1 82 6 28959008 28959288 TAACCATACTGGTCTCGGC 59 28958944 28958963 CAATGCAGATGTCCTCTTCC 59 NA Rattus norvegicus 81 Xkrx ENSRNOG00000054136 ENSRNOT00000077996 1 1 1 80 X 104979790 104983824 ACCTGTTATCAGATGTTTGGAG 58 104979731 104979750 CTGACATATGGCTCTTCCTG 58 NA Rattus norvegicus 81 AABR07068187.1 ENSRNOG00000048388 ENSRNOT00000074236 3 1 1 76 9 88749380 88749398 CAGAGTATGCACACTGGCT 60 88748921 88749340 GAGGAGCACTCTGTTCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000050927,ENSRNOT00000002376 1 2 2 80 11 83893170 83896682 ACTTCTTTGCACAAGACCC 58 83896726 83896744 AATGAGTCTGCCAATGCTG 59 NA Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 1 2 2 81 10 86518429 86519330 CGTAGCCTTTCAAGTGAATCC 59 86519373 86519391 ATTGGTGACGTCCTCACAG 60 NA Rattus norvegicus 81 LOC100362298 ENSRNOG00000030107 ENSRNOT00000048495 3 1 1 60 5 117509574 117509594 CACGACAATACAAGATCCCTG 59 117509612 117509634 TTCCTATCCTTTACGTCCTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365250 ENSRNOG00000022680 ENSRNOT00000029920 3 1 1 81 1 103717186 103717224 GGCAACACTCTGTTACTGTC 59 103717124 103717147 CAATTTCCTTCACTAAGGGTACTG 60 NA Rattus norvegicus 81 Pdcd11 ENSRNOG00000020304 ENSRNOT00000027512 1 1 1 80 1 266905344 266905683 GAAGTTCAAGGAAGCTGGTG 59 266905724 266905744 CCATATTTGATCCAGACAGCC 59 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000038006,ENSRNOT00000088884 2 2 2 81 13 90067402 90074912 TCTGCCAGCTAACAGTCAC 60 90067339 90067359 AGAGTGAATGTCACAGATCCA 59 NA Rattus norvegicus 81 Taf7l ENSRNOG00000026315 ENSRNOT00000045556 1 1 1 80 X 105302990 105303010 ATGAGTTTAAGGCATGAGGAG 58 105300855 105302949 ATGATGTCCATCAGTTACCG 58 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 3 2 2 80 2 104057848 104057868 AATCCTTACCACAATGCAGTC 59 104053535 104057806 ATTGGCAAGCTTAGGTTCC 58 NA Rattus norvegicus 81 AC114343.1 ENSRNOG00000051860 ENSRNOT00000089631 2 1 1 192 15 28028960 28028978 CAGCCAAAGACTCCATCCT 59 28029134 28034118 GTCACCTAGAAAGTGCACG 59 NA InUTR Rattus norvegicus 81 T2 ENSRNOG00000024172 ENSRNOT00000033685 2 1 1 81 1 52941726 52942663 ACGCCTACCTGATTGTAGG 59 52941663 52941683 CAGAAATCCTCGTAGTCACTC 58 NA Rattus norvegicus 81 Cd48 ENSRNOG00000004737 ENSRNOT00000006306 1 1 1 80 13 90131392 90131412 CAGAGGTGACTACTACATGAG 57 90131451 90134242 GACACAAGATCGTATACTTCCA 58 NA Rattus norvegicus 81 Olr819 ENSRNOG00000005469 ENSRNOT00000007235 2 1 1 83 4 72637899 72637917 TACAGCCTGAGGAATGCTG 60 72637962 72638133 GATGCACCATATCAATTGGGA 59 NA Rattus norvegicus 81 Nudt1 ENSRNOG00000001260 ENSRNOT00000001700 2 1 1 85 12 16394210 16394872 GGCTAAGAGGGAGCTTCTG 60 16394143 16394162 AGCCCACAAACTCAAATGAG 59 NA Rattus norvegicus 81 LOC100909796 ENSRNOG00000009770 ENSRNOT00000012938 1 1 1 60 3 74737953 74737973 TACGGTGTGATCATGTCTCAG 60 74737913 74737932 TGTAGAGGTATGGAATGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 3 2 2 84 2 236426621 236431083 CAAGGAGAAGGGAATCGTG 58 236426555 236426573 GAAGTGACGAAGGGTTGAG 58 NA Rattus norvegicus 81 LOC100909831 ENSRNOG00000059263 ENSRNOT00000046197 1 1 1 60 3 74749205 74749225 GTGGTTATCGTCTTCTATGGT 57 74749165 74749183 AGTGACTTGATTTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC257650 ENSRNOG00000028430 ENSRNOT00000038939 3 1 1 90 10 86223352 86226917 CTTCCCTGCTAGATGTGGA 59 86226971 86226989 CCATGCTCTCCAAATCCAG 58 NA InUTR Rattus norvegicus 81 Arhgap36 ENSRNOG00000007552 ENSRNOT00000068717 2 1 1 81 X 136491708 136491981 GAGGGTGATTGAGCTTCGT 60 136492024 136492044 AGCCACATCATTGACATTCAC 59 NA Rattus norvegicus 81 Olr563 ENSRNOG00000037833 ENSRNOT00000057478 1 1 1 60 3 75478008 75478027 CAATGCCTCCACCATTACAC 59 75478049 75478068 CTGGAGATTGGGAATTTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543,ENSRNOT00000050994 2 2 2 85 4 78750318 78754696 CTTCGATTAAGATCGCGCC 59 78750251 78750269 CTTGAACTGAGCCTCTGGT 59 NA Rattus norvegicus 81 Rn60_X_0746.5 ENSRNOG00000051197 ENSRNOT00000075930 1 1 1 60 X 73730286 73730305 GATTGCCCATGATGTAGACC 59 73730245 73730263 CTTTCGACAAAGGGCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 3 3 3 80 11 71350980 71351152 GTATCTGAAGGTGGAGCAG 57 71350918 71350937 CAGTCGAACATCTCTAGCAC 58 NA Rattus norvegicus 81 Mvb12b ENSRNOG00000017172 ENSRNOT00000023172 1 1 1 80 3 12892810 12892828 ACTCATCGACGTCAAGGAC 60 12886601 12892766 CTGAAGACCACCTCCTGTG 60 NA Rattus norvegicus 81 AABR07042616.1 ENSRNOG00000050034 ENSRNOT00000044037 1 1 1 80 19 341837 342487 CTTCTATCGCAACCTGCAC 59 341775 341794 CTCTCCTGCTTCAATGTGAC 59 NA Rattus norvegicus 81 AC099183.3 ENSRNOG00000060941 ENSRNOT00000074099 1 1 1 136 10 87529562 87529580 GATCCTTCTCCTCCCAGAG 58 87529444 87529462 GATGGGCCTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heatr5a ENSRNOG00000006483 ENSRNOT00000035309 2 1 1 80 6 72661256 72661861 GACGAAGTGCAGAAGTTGAC 60 72661195 72661213 GTCCTCCTGTGTCCTTTCC 60 NA Rattus norvegicus 81 Lsm4 ENSRNOG00000019572 ENSRNOT00000026567 1 1 1 117 16 20508437 20511634 GGAAGATGCTTCCCTTGTC 58 20507343 20507361 ATGTTCATCCAGTTGTCGC 59 NA InUTR Rattus norvegicus 81 Senp17 ENSRNOG00000050153 ENSRNOT00000049542 2 1 1 60 4 160802759 160802778 GAAGTTGAGAAAGCATTGGG 57 160802718 160802736 GCTTGAATCCCGTACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbp2 ENSRNOG00000013932 ENSRNOT00000018755 1 1 1 80 8 106516042 106516064 TATGACCTAGATTTCACAGTGGG 60 106516103 106525955 GACTAGGGTCTTGACGTTCC 60 NA Rattus norvegicus 81 Btc ENSRNOG00000002728 ENSRNOT00000003686 3 1 1 81 14 18263349 18263370 CCAAGCAATACAAGCATTACTG 58 18263412 18267268 TTCTCACAGATGCAGGAGG 59 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657,ENSRNOT00000039273 1 2 2 82 19 55223106 55225349 AGAGACACGACACTTGAGC 60 55225395 55225413 TTCTCGTACTGTCCACCAC 59 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000066899 2 1 2 89 10 85629291 85630165 AAGAATCAGTCTTCCCTGTG 57 85630217 85630235 TTTCTCATCCCAACCACAC 58 NA Rattus norvegicus 81 LOC100909653 ENSRNOG00000045602 ENSRNOT00000073965 1 1 1 60 3 103264360 103264379 ACATTCCTCAAGTGGTTCCT 59 103264319 103264338 CACAACAGAGATGTGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx16 ENSRNOG00000030157 ENSRNOT00000065025 1 1 1 80 20 3372062 3377239 GGCCTCTGAGAAGTATAGCTG 60 3372002 3372024 CGGTAGAAGATGGAATTGTTGAC 60 NA Rattus norvegicus 81 Rn60_18_0146.1 ENSRNOG00000029958 ENSRNOT00000051543 1 1 1 60 18 14731745 14731764 TGTAAGAACAAGCCATACCC 58 14731787 14731805 GGATCTTAGCATCAGGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppm1d ENSRNOG00000003329 ENSRNOT00000004540 1 1 1 80 10 72924848 72924866 TGACACAAGATCACAAGCC 58 72924908 72931329 CAGACTTGTTCATCACACTCC 59 NA Rattus norvegicus 81 Csn1s2a ENSRNOG00000039331 ENSRNOT00000060273 2 1 1 80 14 21941113 21941132 AATCTGCCAGTGTCTACCTG 60 21940201 21940982 AACTGCTAGCAGAGTCCTG 59 NA Rattus norvegicus 81 Psmd2 ENSRNOG00000001719 ENSRNOT00000002358 3 1 1 80 11 83943739 83943757 CAAATTTCTGCGTCCACAC 58 83942646 83943696 GCAGCAAAGCACTTATTCTC 58 NA Rattus norvegicus 81 Pias4 ENSRNOG00000020230 ENSRNOT00000027441 2 1 1 80 7 11424057 11424182 AACTATGGCAAGAGCTACTC 57 11424225 11424243 CGTCTTCAACCTCTGTAGC 58 NA Rattus norvegicus 81 St8sia3 ENSRNOG00000018305 ENSRNOT00000024752 1 1 1 80 18 59753129 59754753 AACATGTCAACAGGTACTGGA 59 59754793 59754813 ATGCAAGGGTGTACATAAGGA 59 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 1 2 2 80 6 26581854 26581873 TACATTGATGCGGGTTACCT 59 26581914 26582177 TGAACCTGAAAGACTCCAGAC 60 NA Rattus norvegicus 81 Enam ENSRNOG00000003672 ENSRNOT00000049462 1 1 1 80 14 21197992 21201153 TCAGCAATGAAGAAGGAAATCC 59 21197933 21197955 TCTCTTCTGAGTAATAAGGACGG 59 NA Rattus norvegicus 81 Pdcd7 ENSRNOG00000014340 ENSRNOT00000019258 3 1 1 95 8 70872329 70872594 GGATCCAGATGAGTTCCCA 59 70872652 70872671 CTTATTTGAATGAGCGCAGG 58 NA Rattus norvegicus 81 RGD1310717 ENSRNOG00000017039 ENSRNOT00000022992 2 1 1 80 1 169355067 169355085 TCTGACCCAGCTCTTATGG 59 169352242 169355025 TACACTTCTTACCAGCTGAGG 59 NA Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 1 2 2 112 1 90952694 90953342 AGCCTCAGGACAAGAAGAG 59 90952508 90952526 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Hddc3 ENSRNOG00000012236 ENSRNOT00000016445 3 1 1 133 1 142137155 142137173 CAAACTGGAAAGAAAGCGG 58 142137270 142137595 GTTCTGACCAGCCTTTAGG 58 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 3 2 2 81 2 243429658 243429677 TTACTTGACAAGCCATGGAG 58 243429718 243431340 GTGAATATCCTTCCAGTTGACC 59 NA Rattus norvegicus 81 LOC100911282 ENSRNOG00000047274 ENSRNOT00000060298 2 1 1 80 15 29672359 29672549 CAGATTTGCTGGGTGAGAG 58 29672297 29672315 CAGAACAGAACTGGTTCCC 58 NA Rattus norvegicus 81 Tmem236 ENSRNOG00000037982 ENSRNOT00000057785 1 1 1 80 17 81305463 81305481 TTCTGTTGTCCCTGATCGT 59 81305522 81341424 TTTCATAACCCATTTGACTCCC 59 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155,ENSRNOT00000085132 3 2 2 80 3 112094282 112094592 GATGGCCTGAAGATATTCACTG 59 112094223 112094244 CTCTATCAAGAAGTTGAGCACG 59 NA Rattus norvegicus 81 LOC100910401 ENSRNOG00000047637 ENSRNOT00000075276 2 1 1 80 15 47457077 47457820 CCATGGCAAATTAGAACTGGT 59 47457862 47457880 CTCTCCAAGTTGATGTCGC 59 NA Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000088447 3 1 2 113 3 173955863 173955883 GGAATAAAGAAGTCACCTCCC 58 173956912 173959473 CATTTATACTGCAGCCTTTAGC 58 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 3 2 2 80 11 71994468 71994489 TGTCTTGAAGTTCTACGACTCC 60 71994527 71995448 GAAGGAAAGCCATCTTTCTCAG 59 NA Rattus norvegicus 81 Vezf1 ENSRNOG00000009819 ENSRNOT00000055705 3 1 1 84 10 75371872 75373508 CCTTCAAATGCCAAACGTG 58 75373556 75373574 GATACCTTGCCTTCATGGC 59 NA Rattus norvegicus 81 Rpl27-l1 ENSRNOG00000031517 ENSRNOT00000047308 2 1 1 60 X 68955150 68955168 ATGTGTTCAGAGACCCAGC 60 68955108 68955126 TCAAACTTGACCTTGGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948,ENSRNOT00000044810 1 2 2 80 4 21872895 21872915 GAAACTGTGAATTCTGTGACG 58 21872956 21874299 TTCATCAGGGTCATTCTGAG 57 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000077334 3 1 4 81 2 149480358 149480378 AGAAAGATACCAGGATGACAC 57 149480419 149481407 CATTCCTCCTACCAGATTCAG 58 NA Rattus norvegicus 81 RGD1565166 ENSRNOG00000021796 ENSRNOT00000032495 3 1 1 86 10 10563479 10563883 AAACTGTTCGAAGATGGCT 57 10563931 10563951 GTATTCTGCCAGGATGTAGAG 58 NA Rattus norvegicus 81 RGD1304884 ENSRNOG00000017431 ENSRNOT00000023478 1 1 1 80 19 53729956 53729975 AACATGAAAGGCTTCTTCGG 59 53730017 53730870 TTTGTTCTCATCCTCCTCGT 59 NA Rattus norvegicus 81 Sfmbt2 ENSRNOG00000029235 ENSRNOT00000065942 2 1 1 80 17 71825925 71837763 GGAAGTATTTAAGGACCATGCAG 60 71825867 71825887 TCATTGATGTGCAATGTCTCC 59 NA Rattus norvegicus 81 Taf5 ENSRNOG00000020274 ENSRNOT00000027482 3 1 1 80 1 266855417 266857129 CCGGATAGGAACTACCTACTC 59 266857168 266857189 AACTAAGCAAGTGAAAGTCTGC 60 NA Rattus norvegicus 81 Hdac2 ENSRNOG00000000604 ENSRNOT00000000742 1 1 1 80 20 43092687 43093825 AGGAGACTTGAGGGATATTGG 59 43092627 43092645 TCGTCATCTATACCGTCCC 58 NA Rattus norvegicus 81 Hdac2 ENSRNOG00000000604 ENSRNOT00000000742 3 1 1 80 20 43087907 43087927 CTGATCATAAGAAGGGAGCCA 59 43086001 43087868 CCTTAACATCTGTCCTCTTGTC 59 NA Rattus norvegicus 81 Olr1395 ENSRNOG00000046182 ENSRNOT00000048930 1 1 1 60 10 34693396 34693415 TCTTCTGTGAGATGCCTGTG 60 34693437 34693456 GCCTCTGTATCTCCTGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l2 ENSRNOG00000017448 ENSRNOT00000023451 3 1 1 98 1 80396650 80396668 CTTAGCAGTTCGGAAGCTC 58 80396730 80397150 CACCAGAACCTGGTATGGT 59 NA Rattus norvegicus 81 Olr681 ENSRNOG00000058748 ENSRNOT00000080527 1 1 1 60 3 77927567 77927586 GTCTCCTATGGTGTCATCCT 58 77927526 77927545 CTTTCCTTCGTCCTTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 3 2 2 80 18 77291671 77291689 ACTATGAGACGGAAGGCAG 59 77275846 77291628 CCAAGTAACCATGTAGCTGC 59 NA Rattus norvegicus 81 Olr428 ENSRNOG00000030460 ENSRNOT00000041835 3 1 1 60 3 21276918 21276937 TGGAAAGCCTTCTCTACCTG 59 21276959 21276978 TACTCCCATAGAACAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000084270 2 1 2 98 1 226742943 226760203 CCAGGGTAGCAATAGTTAAACTG 59 226760261 226760279 TCTGCATTTCCTCCAGCTC 60 NA InUTR Rattus norvegicus 81 LOC100362409 ENSRNOG00000049515 ENSRNOT00000073734 2 1 1 80 X 83860201 83862001 TTTAGTTGCTGGGAAACGAG 59 83860140 83860163 GGAATATTATATTCCTCAGCCAGC 59 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408,ENSRNOT00000077707 3 2 2 80 1 47991232 47991253 GAAATCAATGTAGCCTTTGCAG 59 47991292 47991687 ATAGATGTTCACCTTCTCGGG 59 NA Rattus norvegicus 81 LOC688906 ENSRNOG00000005263 ENSRNOT00000007003 2 1 1 80 7 137815759 137815779 TTGATTAGGCAGAAACGACAG 59 137814208 137815717 TACAGAGCCAACTCTTCCA 58 NA Rattus norvegicus 81 Prkcq ENSRNOG00000019057 ENSRNOT00000025901 3 1 1 80 17 70991792 70996339 GTCTACAGGGACCTGAAGC 60 70991730 70991749 TTTGCACATCCCAAAGTCTG 59 NA Rattus norvegicus 81 Zmpste24 ENSRNOG00000012054 ENSRNOT00000016410 2 1 1 80 5 139987436 139987454 TTTATGACAGCCAACCCAC 58 139984342 139987395 AAGACAGAACCTCATTGTAAGG 58 NA Rattus norvegicus 81 RGD1560470 ENSRNOG00000033863 ENSRNOT00000040995 2 1 1 60 3 2801581 2801600 GAGGATGACTTGATGACCTG 58 2801540 2801559 CGTTGAACATGGTCTCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttyh2 ENSRNOG00000024578 ENSRNOT00000004081 1 1 1 80 10 103237191 103237210 TGCTAAACAACTCTGAGACC 58 103237253 103238420 CGTCCAAGTAGTCCTTGTG 58 NA Rattus norvegicus 81 LOC500034 ENSRNOG00000007224 ENSRNOT00000009752 1 1 1 96 4 40092912 40121953 AATGGTGTTGTAGTGTATGCAG 59 40092837 40092855 GTCTTAGTGGCGAGGACAG 60 NA Rattus norvegicus 81 Chchd10 ENSRNOG00000028356 ENSRNOT00000031472 3 1 1 80 20 13665201 13665366 ATACAATCACGGTCTGAGCT 59 13665140 13665158 CCATCAAACTGTCGGTGAG 59 NA InUTR Rattus norvegicus 81 LOC100912228 ENSRNOG00000046449 ENSRNOT00000074351 3 1 1 89 4 79579177 79579195 ATATGGCAAGAGATCCAGC 57 79579248 79581019 TCTTCAAGCCTTGTTCTGG 58 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827,ENSRNOT00000025070 2 2 2 80 4 118878387 118881543 ACTACACTGTGAACTTGGGA 59 118881584 118881604 CACAAGCAATCAGAATCAACC 58 NA Rattus norvegicus 81 Ska2 ENSRNOG00000025981 ENSRNOT00000036098 1 1 1 82 10 74414026 74421284 AACTGATGTTCCAGAAAGCT 58 74421327 74421347 GTGTGGGTGATTAATCTTGAC 57 NA Rattus norvegicus 81 Olr308 ENSRNOG00000050992 ENSRNOT00000047834 2 1 1 60 1 213288296 213288315 CTAGATCCAGCTACAACCCA 59 213288337 213288356 CTGAGGACCGAGTATAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn5 ENSRNOG00000013981 ENSRNOT00000018860 1 1 1 80 1 103203713 103206866 ACCATCCTTCCCAATCCTC 59 103203651 103203671 GGCATTGATGTAGGAACTCAG 59 NA Rattus norvegicus 81 Olr437 ENSRNOG00000057924 ENSRNOT00000079349 1 1 1 60 4 72590278 72590296 CACCTGCTCCTCTCATCTC 59 72590318 72590338 ATACACCAACATGGCTATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr437 ENSRNOG00000057924 ENSRNOT00000079349 2 1 1 60 4 72590347 72590366 TGATTCTGATCAGCGAGAGG 59 72590386 72590407 GTTAAAGAGACTGTGGAACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 1 2 2 81 1 220075869 220075887 GATCTGGGCAATGTTCACG 59 220075736 220075824 TCACATCCCACACCTTCAG 59 NA Rattus norvegicus 81 Wipf2 ENSRNOG00000027849 ENSRNOT00000029021 3 1 1 80 10 86808008 86811137 CCTTCCTGGATGACTTTGAG 58 86811178 86811198 GAAGATGCCTGTACTCTTCTG 58 NA Rattus norvegicus 81 Wdr90 ENSRNOG00000020006 ENSRNOT00000027121 2 1 1 80 10 15214786 15214805 CTGGCACAATCTGGTATGTC 59 15213712 15214743 CCTCGTTTACCTTGGTCCT 59 NA Rattus norvegicus 81 Pcdhb5 ENSRNOG00000020084 ENSRNOT00000027206 2 1 1 60 18 30398331 30398350 CAGGCAAGTGATTCCTTTCC 59 30398373 30398391 AGTAGGCACCATGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb5 ENSRNOG00000020084 ENSRNOT00000027206 3 1 1 60 18 30399265 30399283 GATGGAGGAGGGCTTTCTG 60 30399307 30399325 TGTCGTTCACATCCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcerg1l ENSRNOG00000016737 ENSRNOT00000031734 1 1 1 80 1 210588466 210588484 TGAAAGCAGTGATGGATCC 58 210570463 210588422 CAGCTTTCAGTCCTGTTCC 59 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504,ENSRNOT00000077163 3 2 2 81 8 71001649 71001667 CAGTGGAACTGCAGATGTG 59 71001709 71006489 TGGATACTGCAAAGCTATAACC 58 NA Rattus norvegicus 81 Galr1 ENSRNOG00000016654 ENSRNOT00000022401 1 1 1 87 18 79257743 79257761 CAAGAAGGCTTACGTGGTG 59 79252291 79257693 ATTGAGAACCTTGGCATAGC 58 NA Rattus norvegicus 81 Mical1 ENSRNOG00000000307 ENSRNOT00000000337 3 1 1 80 20 46203345 46203363 AGAAATCAGTGGCGTAGCT 59 46203404 46203989 TTCTCCAGATCAATACCTGTGG 60 NA Rattus norvegicus 81 Tas2r124 ENSRNOG00000021430 ENSRNOT00000030813 2 1 1 60 4 166912231 166912253 AATTCCAGAGAAGATAGAGACCC 59 166912269 166912291 CCATAATTCCTAAGGCATTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr363 ENSRNOG00000053382 ENSRNOT00000083727 2 1 1 60 1 230269378 230269396 CCCTTGCACTATGCTACCA 60 230269417 230269438 AGGAACCTAAAGAAAGACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000081406 2 1 3 85 9 81566993 81567014 GAATACATTCCCAGAAAGAGGG 59 81586089 81586107 AAGTGAGATGGAGGCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858,ENSRNOT00000067639 2 2 2 80 16 6662517 6662538 AGAGACTGTCGGAATATACCAG 59 6662163 6662476 TAGGTCCCGTTGTTGTCTG 59 NA Rattus norvegicus 81 Rn60_4_1369.2 ENSRNOG00000050575 ENSRNOT00000075192 1 1 1 80 4 72090141 72090949 GTTCAGATATCAAATGGCTGG 57 72090081 72090101 CAAACTGACTAGTTCTTGCAC 58 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 2 2 2 101 5 58394292 58396482 AAAGTTTCGAAACAAGGAGCC 60 58396545 58396563 ATCTCATCTTCGTTGGCCC 60 NA Rattus norvegicus 81 Mss51 ENSRNOG00000007632 ENSRNOT00000010178 1 1 1 80 15 4248653 4248672 GCTTACTGTAAAGCACTCCC 59 4248712 4249288 GTAATAGACGTTTCTGCACCTC 59 NA Rattus norvegicus 81 Ints1 ENSRNOG00000022599 ENSRNOT00000060370 2 1 1 80 12 16956851 16956869 ATGATGCTGGGCATTACAG 58 16956913 16957139 TAGCACCTCGAGGTTTCTC 59 NA Rattus norvegicus 81 Pigt ENSRNOG00000014690 ENSRNOT00000019761 1 1 1 80 3 160948586 160949138 GCCAATCTGCAGAAATGCT 59 160949179 160949200 ATGAAGGCATCAAAGACAACTG 60 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925,ENSRNOT00000036744 3 2 2 80 12 17013601 17013706 AACTCATGTACAAGTCCAAGGA 60 17013747 17013765 TCTCCATCAGTCTACGCAG 59 NA Rattus norvegicus 81 Shmt1 ENSRNOG00000005275 ENSRNOT00000007092 1 1 1 80 10 47057514 47059197 CATGGGTGCAGATATTCCTG 59 47057453 47057471 TCACATGTCCCATCCTGTC 59 NA Rattus norvegicus 81 Rltpr ENSRNOG00000024452 ENSRNOT00000041970 1 1 1 80 19 37657155 37657283 CAGATAATGGCTTTGGCTCC 59 37657326 37657344 CAAGGGCCACATGTTTCAG 59 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000047666,ENSRNOT00000042281 3 3 4 80 8 53877877 53878218 CCTGGTTCAAGCAGATACAC 59 53877816 53877836 TCAAATTGTACCTGTGCTGTG 59 NA Rattus norvegicus 81 Mfsd1 ENSRNOG00000013790 ENSRNOT00000018489 1 1 1 80 2 164753089 164754521 AGGTTTGTGTTTGGGATTGG 59 164754561 164754582 TTCTTTGCCTTTAAACCAGCTC 60 NA Rattus norvegicus 81 Arrb1 ENSRNOG00000030404 ENSRNOT00000043554 1 1 1 80 1 164567026 164568264 TGACACCAATGATGACGAC 58 164568308 164568326 TCTTCGTCCTTGTCATCCT 58 NA Rattus norvegicus 81 Nceh1 ENSRNOG00000013313 ENSRNOT00000017805 2 1 1 90 2 112929546 112931209 GGACAGCAGTTTACCTACG 58 112931263 112931281 TGTTGAAGTCCAAAGCCTG 58 NA Rattus norvegicus 81 Nol3 ENSRNOG00000015588 ENSRNOT00000020908 1 1 1 128 19 37235329 37235347 CAAACTGTGAGCATGCCAG 60 37235574 37235592 ACATGTGGTCCCTGAACTG 60 NA DesignNoJunction Rattus norvegicus 81 Ston2 ENSRNOG00000004458 ENSRNOT00000005881 2 1 1 80 6 115401428 115401447 CATCTCTGTGGAAGACAAGC 59 115399770 115401388 TGTTCAATTTCCACCTTGTAGC 60 NA Rattus norvegicus 81 Sult1b1 ENSRNOG00000001967 ENSRNOT00000002699 2 1 1 91 14 22146495 22146519 CTCCATCACCTCGAATTATAAAGAC 60 22146565 22147483 AGCAAGGTAAATCATCTTGCAC 60 NA Rattus norvegicus 81 LOC102550729 ENSRNOG00000046450 ENSRNOT00000070851 3 1 1 81 18 87637665 87637684 CTGGATCCTTCACAGAAGAG 57 87637726 87637932 CCCAATTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 2 1 1 60 1 53562976 53562994 CTTTGGGTGATGTGACTGC 59 53562778 53562955 TTCTGTACAGTATTTCCCTCTG 57 NA DesignNoJunction Rattus norvegicus 81 Prol1 ENSRNOG00000023578 ENSRNOT00000032459 2 1 1 60 14 21352462 21352482 GAAACTTTCATCTTGGGCCTG 60 21339461 21352440 GATGACTTTCTCCAGGCGT 60 NA DesignRelaxed Rattus norvegicus 81 Olr669 ENSRNOG00000053394 ENSRNOT00000084989 1 1 1 60 3 77677117 77677135 TCTCCTCTGTTGTCACACC 59 77677075 77677093 GAGATGCTCTTCCTCTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd6 ENSRNOG00000011657 ENSRNOT00000015517 3 1 1 60 15 61692433 61692453 CCCAGAGGAATTAAAGGACAC 58 61692475 61692493 GAAAGACTTGAGCTGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 2 2 2 80 1 36303738 36303756 ACTGGAGGGTTCTTTGTGG 60 36301931 36303696 TTTACTCTGTACCTTGGGCTG 60 NA Rattus norvegicus 81 Nog ENSRNOG00000023683 ENSRNOT00000032388 2 1 1 60 10 76813033 76813051 CTATCTACACATCCGCCCA 59 76812991 76813009 ATGTTCGATGAGGTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk24 ENSRNOG00000011511 ENSRNOT00000034723 2 1 1 80 15 106634149 106634167 AAAGACTTCCCAAAGAGGC 58 106632622 106634105 GCTCTTCTCTTTCAGCTCC 58 NA Rattus norvegicus 81 Stk24 ENSRNOG00000011511 ENSRNOT00000034723 3 1 1 80 15 106635484 106635503 CATCGACAGGTACAAGAGGT 59 106635054 106635445 CTATCTGTCTCCACATCTGAGTC 60 NA Rattus norvegicus 81 Fam26f ENSRNOG00000037757 ENSRNOT00000057317 1 1 1 60 20 27682258 27682276 ATGCAGGAGATCCTGAGTC 59 27681611 27681629 CTATCAGAACCCAACCGAG 57 NA DesignNoJunction Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000085323 3 1 5 109 9 81674754 81674772 CAGTCCAGTACCTGCTTCC 60 81674844 81674996 GTTGTTCACTGGCTTGAAGG 60 NA Rattus norvegicus 81 Orm1 ENSRNOG00000007886 ENSRNOT00000010454 2 1 1 80 5 79181409 79181428 AAATATTCCAGCAGGCTGTC 58 79181470 79182636 TGCACTTATCCTTTGTCCAG 58 NA Rattus norvegicus 81 Olr424 ENSRNOG00000007977 ENSRNOT00000010493 2 1 1 60 3 21130991 21131012 GTGTTAGTCACTCGTTTAACCT 59 21130952 21130971 TGATGTCACAGAAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fat3 ENSRNOG00000011585 ENSRNOT00000015977 1 1 1 80 8 14503706 14506254 ACATAATGGTCAGAGATCAGGA 59 14503647 14503665 GGTCGTTAGCATCTTCCAC 58 NA Rattus norvegicus 81 LOC100909771 ENSRNOG00000048973 ENSRNOT00000073537 3 1 1 80 1 259940637 259940740 TGTCTCTGCAAGATTATGCCT 60 259940780 259940800 GGATAATCCTCGAAGAAGCCA 60 NA Rattus norvegicus 81 AABR07061345.3 ENSRNOG00000057968 ENSRNOT00000080096 1 1 1 60 4 117751203 117751221 CTGACACTGCCTCATTCTC 58 117751161 117751181 ACACTAGGATTATGGTCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r130 ENSRNOG00000005645 ENSRNOT00000007435 2 1 1 60 4 165746804 165746825 TTGACAAGCTAATTCTGAGGAC 59 165746765 165746784 AGGCTAAAGCATAGGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dtwd1 ENSRNOG00000009593 ENSRNOT00000012966 1 1 1 80 3 118431040 118431061 CTACTGCTACACATGCTATGTC 59 118431101 118434806 TCAATCTTCAGTGGAAGCTG 58 NA Rattus norvegicus 81 RGD1561777 ENSRNOG00000024543 ENSRNOT00000035047 3 1 1 83 20 44998648 44999723 CTGGATACAGGTGGGAACG 60 44998583 44998601 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 LOC681241 ENSRNOG00000021898 ENSRNOT00000034474 3 1 1 80 17 86322081 86322100 GGGATGCAGAAAGATTCTCC 59 86310676 86322041 TCATCAGAAATAGCAAGTCTGG 58 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 3 2 2 80 4 34602702 34610183 ATCGTGATAAAGACAGTGGGA 59 34610222 34610243 TGAACATGTAGCTGTTGTTTGG 60 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622,ENSRNOT00000057266 2 2 2 80 12 41284932 41284951 AACTTCCTGAAGTATCGTGC 58 41284990 41287925 CCTCTTCTTACACAGTTGATACC 59 NA Rattus norvegicus 81 LOC500702 ENSRNOG00000030420 ENSRNOT00000046625 1 1 1 97 6 116235641 116235664 GGTATTGTCTAGCATCTATAGGAG 58 116234214 116235585 CTGCATCATCAGTCTCAGC 58 NA Rattus norvegicus 81 RGD1564634 ENSRNOG00000029824 ENSRNOT00000046324 1 1 1 60 15 108956517 108956538 TACATGCGAATCTACAAGAAGG 58 108956559 108956577 TTTGAACACTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clcn7 ENSRNOG00000016976 ENSRNOT00000023615 3 1 1 81 10 14503107 14503126 TAGTAGCCTGCTTCATTGAC 57 14503170 14503636 AACTTGTCGATGTTGTCCT 57 NA Rattus norvegicus 81 Nsun6 ENSRNOG00000018520 ENSRNOT00000025046 1 1 1 80 17 82053941 82053959 CAGCATTCCCGTTCTTCAG 59 82048001 82053903 CTTTCTATATTCTTCCTTGGTCCAG 59 NA Rattus norvegicus 81 P2ry2 ENSRNOG00000019283 ENSRNOT00000026115 2 1 1 91 1 166037229 166037247 ATCCTCGTCACACCAAGAG 59 166032746 166032764 ACTATTCCAGGAGTCCAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iqgap3 ENSRNOG00000027894 ENSRNOT00000038589 3 1 1 80 2 187472632 187472743 TTCCAGAAGAACGTTGACTC 58 187472784 187472804 TAACATCCTGTAGTCATCACG 57 NA Rattus norvegicus 81 Srsf9 ENSRNOG00000001163 ENSRNOT00000001539 1 1 1 83 12 47040635 47042129 CTTGTTTCAGGGCTTCCTC 59 47040570 47040588 GTCTGCGTAACAGACATCC 58 NA Rattus norvegicus 81 AABR07072281.1 ENSRNOG00000052199 ENSRNOT00000071110 1 1 1 80 12 21970701 21970722 TCTTACCAGTGCAGAATTTGAG 59 21969269 21970661 ATACAGGAAGTCTCCAAGCA 59 NA Rattus norvegicus 81 Casp1 ENSRNOG00000007372 ENSRNOT00000009993 3 1 1 80 8 2610730 2610750 AGATGATGGCATTAAGAAGGC 59 2610790 2613417 CTCCAGGACACATTATCTGGT 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000026685 3 1 3 98 4 158637985 158705709 GGATAATGATGAGATCTTACAGGTG 59 158637911 158637929 TCCATGTTGTTGCCTTGGA 60 NA InUTR Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 3 2 2 80 10 86880389 86881222 GGACATCCTGATTCTGCGA 60 86881266 86881284 TTCAGGGTCAGTCCATCTG 59 NA Rattus norvegicus 81 Adal ENSRNOG00000012166 ENSRNOT00000016529 2 1 1 80 3 113107101 113107121 GACAGTTCCTTCTTATGACCA 58 113107160 113107661 TTATCATCGGTACAGATCACAG 58 NA Rattus norvegicus 81 AABR07021846.1 ENSRNOG00000057677 ENSRNOT00000072611 3 1 1 60 13 95416339 95416359 AGACTCTGAAGACGATCAGAC 59 95416381 95416399 GGACAGTTGTTGGAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1415 ENSRNOG00000026695 ENSRNOT00000039778 3 1 1 60 10 43930471 43930490 CGATTATCTTTCTCCTGGCT 57 43930430 43930449 AGGAATATGAGGGCATAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612,ENSRNOT00000089073 1 2 2 80 1 248298707 248298725 CTTGACCTGTGTCACATCC 58 248297985 248298663 GGTTTCACAAAGGGCAGAG 59 NA Rattus norvegicus 81 Galc ENSRNOG00000003759 ENSRNOT00000005015 3 1 1 80 6 122210595 122212947 ATATGACCGCCACAATTGC 59 122210533 122210553 CTGTCATCAATCCACTTCGTC 59 NA Rattus norvegicus 81 RGD1563975 ENSRNOG00000045953 ENSRNOT00000074996 2 1 1 96 X 130009022 130009042 CAAGGGTTGCTATAAATGTGC 58 130009100 130009423 CAACTCCACCATCTTCCTG 58 NA InUTR Rattus norvegicus 81 Cdc45 ENSRNOG00000050071 ENSRNOT00000072027 1 1 1 80 11 86329453 86330114 TGCAAGATACTTCAGGCCC 60 86330158 86330176 TTCAAGTTCTTGCCACCCA 60 NA Rattus norvegicus 81 AABR07013425.1 ENSRNOG00000050075 ENSRNOT00000073001 1 1 1 60 2 236822468 236822486 AGATGCCTACAGAACTCCA 58 236822426 236822444 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748,ENSRNOT00000020556,ENSRNOT00000079515 3 3 3 80 3 154924103 154924236 AGACAAGTACAGTTACTACTGC 58 154924276 154924295 GATTTGGACTTGACAGAGGA 57 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000073853 3 1 10 81 15 32817358 32817377 GTGAATTATGGAGGCAGTGG 59 32817421 32852790 CTGGGTCTGTGACATTTGG 59 NA Rattus norvegicus 81 Fuca2 ENSRNOG00000015551 ENSRNOT00000020946 2 1 1 80 1 7665995 7666358 ATTGGTGAAGCAACTTGTGG 59 7666400 7666419 ATGATGCCATCTAGTGTGGG 60 NA Rattus norvegicus 81 Olr1443 ENSRNOG00000046777 ENSRNOT00000047914 1 1 1 60 10 44547631 44547649 TGGACACTTTCCTCTTCAC 57 44547673 44547691 ATGTTGCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfeb ENSRNOG00000014666 ENSRNOT00000039102 1 1 1 87 9 15212069 15212183 GCTAACAGATGCTGAGAGC 58 15211415 15211433 GTTGAACCTGCGTCTTCTC 59 NA Rattus norvegicus 81 Ddx23 ENSRNOG00000060154 ENSRNOT00000089612 3 1 1 80 7 140333288 140333306 TCAAGTCTCGGAAGGACAG 59 140332812 140333244 ACAGTGGCTGGATCTTAGG 59 NA Rattus norvegicus 81 Olr519 ENSRNOG00000009852 ENSRNOT00000013060 1 1 1 60 3 74342356 74342377 CTCTTTGTTAGTTTAGGGACCA 58 74342317 74342336 ATCTGTCATATGCCATTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Churc1 ENSRNOG00000007336 ENSRNOT00000009621 3 1 1 121 6 99823366 99823390 GGAAGATGGAGAAGAAATAGTTACC 59 99825720 99831428 GACACAGCATGGTATATTCCTG 59 NA Rattus norvegicus 81 Klhl30 ENSRNOG00000020105 ENSRNOT00000027232 2 1 1 89 9 98498267 98498519 TGTGACAGATGTCTGGAGTG 60 98498571 98498589 TACAGGGCTCCATTGAGAG 59 NA Rattus norvegicus 81 Traf3ip2 ENSRNOG00000000595 ENSRNOT00000000728 3 1 1 80 20 44715055 44719396 CATCGGATGATGCAGATCG 59 44719440 44719458 CTTGGCATTTGGGAAGAGC 60 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 2 2 2 80 13 82362162 82362184 CATTGTCCTCATTGATCTACGTG 60 82362583 82362704 TTTGGCAGCTACTAGCAGG 60 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 1 2 2 80 4 100299539 100299557 ACAGTCACCAGATATCGCC 59 100299402 100299497 AACATCAAACCCTGATCTCCT 59 NA Rattus norvegicus 81 Rpl31l4 ENSRNOG00000039249 ENSRNOT00000045401 3 1 1 60 12 19159590 19159608 AAGCGTAATGAGGATGAGG 57 19159548 19159566 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa5 ENSRNOG00000005698 ENSRNOT00000008325 2 1 1 80 4 51593431 51593449 TTTCCTAAACATGCAGCCT 57 51590959 51593388 ATCTGGTTCCAATTTGACCA 57 NA Rattus norvegicus 81 Serpina5 ENSRNOG00000009855 ENSRNOT00000013138 2 1 1 80 6 127768351 127769266 TATCTTCTTCAAAGCCAAGTGG 59 127769307 127769325 TTCTTGGGAGTCACATGGT 59 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 1 2 2 80 5 21344901 21345643 GTTACGAGGAAGGTGTTGAG 58 21344840 21344859 TGGAGTTCAGGTTGATAGGT 58 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411,ENSRNOT00000088588 1 2 2 81 1 218098550 218099959 GATGCTAGAGGTCTGCGAG 60 218098487 218098505 AGACAAGAAACGGTCCAGG 60 NA Rattus norvegicus 81 Serhl2 ENSRNOG00000022932 ENSRNOT00000036586 2 1 1 80 7 123966400 123966418 TGCATGTTCCCTGAGATGG 60 123966459 123967764 GTTCTCCACTTCATTCAAGTCC 59 NA Rattus norvegicus 81 Olr462 ENSRNOG00000009624 ENSRNOT00000012746 3 1 1 60 3 73226562 73226580 CATCACTCAAGACCCTCAG 57 73226520 73226540 CAGGTAGACAATGAGGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362684 ENSRNOG00000030596 ENSRNOT00000040481 1 1 1 60 5 161889553 161889571 GTGAAGGTTCCAAGACGTG 59 161889594 161889613 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgals3bp ENSRNOG00000003217 ENSRNOT00000004320 3 1 1 86 10 107419336 107420592 TCTGCTCCAACGATTCCAG 60 107419268 107419286 GCTGGCTGTCAAAGATCTG 59 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391,ENSRNOT00000009241 2 2 2 80 13 48440852 48444499 ACCAAGTCTCTGTGGAAGG 59 48444543 48444561 TCACAAAGGTCTGACCAGG 59 NA Rattus norvegicus 81 Syt9 ENSRNOG00000019613 ENSRNOT00000026607 3 1 1 80 1 171718123 171718141 CTTCGATGTCCCTCCTGAG 59 171718185 171720380 TCATTGTGACCTACACGGT 59 NA Rattus norvegicus 81 Sec61a2 ENSRNOG00000023278 ENSRNOT00000039621 3 1 1 80 17 76383087 76384792 TGAGCTGAACAGGTACATCC 60 76384834 76384853 AGGAAGTCTGCTAGTACCGA 60 NA Rattus norvegicus 81 AABR07017599.1 ENSRNOG00000047018 ENSRNOT00000072403 3 1 1 85 15 29064790 29161835 AGCTACACTGGGTTAGCAG 59 29161883 29161902 GTTGAAAGAGGCTTTGGCTC 60 NA Rattus norvegicus 81 Olr865 ENSRNOG00000058382 ENSRNOT00000090022 3 1 1 60 5 137812105 137812128 TCTGAGAAACAGGGATATCAAGAG 60 137812068 137812086 GTTCACCCTACCATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 1 3 3 80 7 28740027 28740361 ACTCGGTCCAGTTATCCTC 58 28741973 28741991 TTCACTAATGGCAGACCAC 58 NA Rattus norvegicus 81 Olr1590 ENSRNOG00000030059 ENSRNOT00000045217 2 1 1 119 13 92177744 92177763 TAATGTTTGCTGTCCTTGCC 59 92177850 92177868 TCAGTGACCAGAGACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Bcl10 ENSRNOG00000042389 ENSRNOT00000019911 2 1 1 127 2 251805487 251811343 GTGAAGAAGGACGCTTTAGAG 59 251811430 251811450 CGGCAAGAAATTTCTTCTGTG 59 NA Rattus norvegicus 81 Ror1 ENSRNOG00000029449 ENSRNOT00000045987 1 1 1 80 5 119128855 119128875 AAGTGGTTTCTACCACTGGAG 60 119129467 119207386 CATACTCGTCTGAGGATCCTG 60 NA Rattus norvegicus 81 Tprkb ENSRNOG00000015818 ENSRNOT00000021211 2 1 1 103 4 117780663 117783433 ATGCCAATGTGATTGTCGA 58 117783497 117783518 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Smpd2 ENSRNOG00000000306 ENSRNOT00000000336 2 1 1 80 20 46213909 46214179 CACACTACTTCAGAAGCGGA 60 46213848 46213866 CGTGCTGGACAATTTCCTG 60 NA Rattus norvegicus 81 Hyal6 ENSRNOG00000021695 ENSRNOT00000009435 3 1 1 81 4 52138270 52141003 CTGATACAAAGGAGACTTGCT 58 52141045 52141064 GCTGATGTTACATTGAGAGC 57 NA Rattus norvegicus 81 Tbx6 ENSRNOG00000019771 ENSRNOT00000068543 3 1 1 114 1 198216302 198216320 TTCACCCTGATTCTCCTGC 59 198216398 198216508 GAATGCAAGATCAGGTGGC 59 NA Rattus norvegicus 81 Arl9 ENSRNOG00000029628 ENSRNOT00000044441 2 1 1 81 14 33441013 33441635 GAGTTCCTGGAGATCGGTG 60 33440950 33440968 CAAAGATGAGCAACCACCC 59 NA Rattus norvegicus 81 Slc39a1 ENSRNOG00000059463 ENSRNOT00000089016 2 1 1 81 2 189610743 189610903 ATGAAGCCTCTGCTTCAGG 60 189610948 189610966 AGAAGACAGGTAGCCAGGA 60 NA Rattus norvegicus 81 Ap3b2 ENSRNOG00000019249 ENSRNOT00000026030 2 1 1 80 1 143296692 143296710 AACGAACATAGGCCGAGTC 60 143296296 143296648 GCAACCACAAGCTCATCAC 60 NA Rattus norvegicus 81 Atraid ENSRNOG00000006326 ENSRNOT00000066743 3 1 1 80 6 26684409 26685083 CTCTACCTGAGATATGCACCC 60 26684349 26684370 TCGATGTATCCTCACAGTAAGC 60 NA Rattus norvegicus 81 Chmp1a ENSRNOG00000016001 ENSRNOT00000021483 1 1 1 81 19 56005457 56006424 AGTGAAGAAGGCCCTTCAG 59 56005394 56005412 GCCTTCATTCTTCTTGCGG 60 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 2 2 2 80 3 55981119 55981138 GAAGAGTCCTCCTAAAGCTG 57 55981180 55983141 GAGTTAGGTGGGTTACACTC 57 NA Rattus norvegicus 81 Igj ENSRNOG00000003666 ENSRNOT00000004866 1 1 1 80 14 21178888 21182303 AGTATCCGAATTGTTGTCCC 58 21182344 21182364 GTACACAAAGTTCGTTCTCAC 58 NA Rattus norvegicus 81 Alkbh4 ENSRNOG00000001428 ENSRNOT00000001939 1 1 1 93 12 23569659 23570539 GGAGGAAGCAGGACTATGG 59 23569584 23569602 ACCTTCTGGCTAAAGCCAG 60 NA Rattus norvegicus 81 AABR07027819.1 ENSRNOG00000031902 ENSRNOT00000041103 3 1 1 60 17 45286448 45286466 TTGCCCATGATGTAGATCC 57 45286406 45286424 ATCTTTCGACAAAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000078758 3 1 12 60 20 3359993 3360013 TTTGTCCATCTCGTCTAGAGG 59 3360035 3360053 AGTGGAATAGTCCCAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000082342 3 1 12 60 20 3363791 3363812 ATTCTCCAATCGAATAGGTCAC 58 3363832 3363851 GAAATACCAGGCATCTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcne4 ENSRNOG00000048478 ENSRNOT00000072242 3 1 1 119 9 84689184 84689763 AAACTGTCAGCCTTTGATCC 59 84689845 84689863 AGACACATGGGACTCAAGG 59 NA InUTR Rattus norvegicus 81 Nipal4 ENSRNOG00000006255 ENSRNOT00000008544 3 1 1 89 10 31244512 31244530 AGTGATGGTCATACATGCC 57 31243974 31244460 AATACGATGAACCCTGTGTC 58 NA Rattus norvegicus 81 Gpt ENSRNOG00000033915 ENSRNOT00000050556 3 1 1 81 7 117761619 117761711 ACCTATCATTTCCGGATGACC 60 117761754 117761772 TGGCATGGAAGTGACTGAG 60 NA Rattus norvegicus 81 Rab8b ENSRNOG00000018009 ENSRNOT00000024286 1 1 1 81 8 72646785 72646806 ATGATCCTGGGTAACAAATGTG 59 72645244 72646748 CATAGTCAATTGCTAACTTCTCCC 60 NA Rattus norvegicus 81 Ubiad1 ENSRNOG00000009575 ENSRNOT00000012692 2 1 1 81 5 165258445 165258463 CTGAAACTGGAGCACTTGG 59 165249761 165258402 ACTTGAATCCAATTCCTCCTG 58 NA Rattus norvegicus 81 Ubiad1 ENSRNOG00000009575 ENSRNOT00000012692 3 1 1 82 5 165258452 165258470 ATCCACCCTGAAACTGGAG 59 165249767 165258409 ATCCAATTCCTCCTGTGTAGAG 59 NA Rattus norvegicus 81 Ctu1 ENSRNOG00000018334 ENSRNOT00000024690 1 1 1 164 1 99602891 99602909 AAGATCTCTTCGGAGGCTG 59 99603037 99603781 CAGCATTGTGACCTGTCAC 59 NA Rattus norvegicus 81 Hk1 ENSRNOG00000046891 ENSRNOT00000072429 2 1 1 80 20 31941080 31941099 AGGACAAGAAGTTACCCGTG 60 31938187 31941037 ACGTGATCAGTACAGCCTC 59 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720,ENSRNOT00000084739 2 2 2 80 19 43347530 43347548 GTAGCACGTTACCTGAAGG 58 43347590 43348066 AGGGACATACACCATAGTGAG 59 NA Rattus norvegicus 81 Fam203a ENSRNOG00000029238 ENSRNOT00000040981 2 1 1 80 7 117435909 117435931 GATCCTTCGAGAGTTATATGCCT 60 117435969 117436063 CCAATAAGCACCTGGATAAGC 59 NA Rattus norvegicus 81 Fam203a ENSRNOG00000029238 ENSRNOT00000040981 3 1 1 80 7 117435227 117435245 CAGTACACAGACTCCTCGG 59 117435289 117435399 CTTGTGGTGTCGATGTTCG 59 NA Rattus norvegicus 81 Bcor ENSRNOG00000034240 ENSRNOT00000041003 2 1 1 80 X 11680657 11680676 TTGATACCTCAGGACTCCAG 58 11680718 11681032 CACAGTCATCTTGGTGTCAG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000002793,ENSRNOT00000067439 3 3 3 80 14 25941214 25941234 CATGCTGGATAAGCTGATACG 59 25941274 25944878 GCCAACAAAGTAGATACCCTG 59 NA Rattus norvegicus 81 Ube2q1 ENSRNOG00000020791 ENSRNOT00000028210 2 1 1 80 2 189112914 189113124 CAAACTCCTCAAAGTTGACCA 59 189113166 189113184 ATGAAGTCTGCTCCTTCCT 58 NA Rattus norvegicus 81 Tcl1a ENSRNOG00000025233 ENSRNOT00000029346 1 1 1 109 6 128890699 128894593 GATAGTCATCAAGAGTAACGGA 57 128890611 128890629 TTAAAGGCAGCTCATACGG 58 NA Rattus norvegicus 81 Kcns3 ENSRNOG00000004899 ENSRNOT00000006499 2 1 1 80 6 36792246 36819719 TCAGACTTGGTGAACTTCAC 58 36792185 36792203 TGGCTCAAAGAAGAGAAGG 57 NA InUTR Rattus norvegicus 81 Il21r ENSRNOG00000015773 ENSRNOT00000021690 1 1 1 80 1 197021631 197023145 CGGGAACTTCAAGAAATGGG 59 197023187 197023206 ACTGATGTTGTGGGACTCTG 60 NA Rattus norvegicus 81 Kbtbd3 ENSRNOG00000022252 ENSRNOT00000034503 1 1 1 165 8 1459620 1459639 TGCATCAGAAGATCATGGAC 58 1459764 1472225 GTTTACTTCAAACATAGCCCTG 58 NA Rattus norvegicus 81 LOC299271 ENSRNOG00000026297 ENSRNOT00000035035 3 1 1 81 6 127548473 127548494 AATTTGAGGAAAGTGAGAAGGC 59 127546263 127548431 AGCCACCTCTTACTCATGG 59 NA Rattus norvegicus 81 Olr305 ENSRNOG00000052972 ENSRNOT00000089511 1 1 1 60 1 213169687 213169706 CATGGACATTATCTGCACCT 58 213169728 213169747 CTCAGACAGTAGACCAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbrm1 ENSRNOG00000028227 ENSRNOT00000016581 1 1 1 80 16 7120841 7120862 CCATAGTTGTAGCCACAAATCC 60 7120900 7124816 CTGGATATTGCACTTTGGAAGG 60 NA Rattus norvegicus 81 Ccl19 ENSRNOG00000015668 ENSRNOT00000020982 2 1 1 80 5 58181713 58181732 CTGGTAACATCGTGAAAGCC 59 58181436 58181672 TTAGTGTGGTGAACACAACAG 59 NA Rattus norvegicus 81 H1foo ENSRNOG00000025251 ENSRNOT00000042673 2 1 1 80 4 147847387 147848094 AGCTTCAAGCTAGTTCCCA 59 147848137 147848156 CTCCTTGGTACCTGTAGCTC 59 NA Rattus norvegicus 81 Clns1a ENSRNOG00000012788 ENSRNOT00000017702 3 1 1 80 1 162689772 162691077 GAAGCACATGAGCAAGGAC 59 162691120 162691139 CCCTTCTGCTGTTAAATGGG 59 NA Rattus norvegicus 81 Trappc3l ENSRNOG00000031290 ENSRNOT00000047000 1 1 1 91 20 27660744 27660762 ATAGAAGAGCTGCCTGCTG 60 27660815 27664291 GCTAAATGAACCATCTCCAGG 59 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 3 2 2 103 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690389 23690407 ATGTGGAACCTGAACACCT 59 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773,ENSRNOT00000014060 1 2 2 80 3 2451101 2451271 CATCATCCAGCTGGATAGCA 60 2451040 2451058 CACCAGTGCTTAATCAGGC 59 NA Rattus norvegicus 81 Brsk2 ENSRNOG00000020021 ENSRNOT00000027134 3 1 1 80 1 214945968 214946185 CTGTACCATCACCCTCCTG 59 214946226 214946247 TCACTTCCATACAGTTAGTGGT 59 NA Rattus norvegicus 81 Nkx2-2 ENSRNOG00000012728 ENSRNOT00000017364 1 1 1 100 3 141409631 141410629 CCTCCAATACTCCCTGCAC 60 141409549 141409567 TGTCATTGTCCGGTGACTC 60 NA Rattus norvegicus 81 Olr575 ENSRNOG00000046025 ENSRNOT00000049264 3 1 1 60 3 75712974 75712998 CTTATGTTTCTGTGGGTCTAATGAG 60 75713013 75713034 GTAAAGTGGAGGTAGATCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680385 ENSRNOG00000011606 ENSRNOT00000015427 1 1 1 60 4 147930933 147930952 ACAGTTTCAAGGAAGGAGGA 59 147930975 147930993 TTTCATTGGTCCACGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dchs1 ENSRNOG00000031643 ENSRNOT00000042865 3 1 1 80 1 170602657 170603192 TCAATTTGACAGTATATGCCCG 59 170602598 170602616 CATCTTCCACAGTCACTCG 58 NA Rattus norvegicus 81 Lsm8 ENSRNOG00000058677 ENSRNOT00000089007 2 1 1 86 4 45556198 45558462 AATGATCGTGGGAACCCTG 60 45558512 45558530 TGAGAAGAGCTGAACACCC 59 NA Rattus norvegicus 81 Klk4 ENSRNOG00000018864 ENSRNOT00000025614 3 1 1 83 1 99831623 99831885 ACACTGCATACAGGACTCC 59 99831932 99831950 TCTAACATCCGACTGCCAG 59 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000064965,ENSRNOT00000076099 3 2 3 86 9 94432049 94453581 TTTGAACAGGTTTCTCCACAC 59 94453628 94453647 GGCCCAAAGTTTAGTGTCTG 59 NA InUTR Rattus norvegicus 81 Slc22a17 ENSRNOG00000016414 ENSRNOT00000021851 3 1 1 80 15 33571296 33571482 GCTTCACCAACTTTATCGC 57 33571234 33571252 AGTAGAAGTCTGATGGGCT 57 NA Rattus norvegicus 81 Tsen54 ENSRNOG00000004598 ENSRNOT00000006327 3 1 1 80 10 104360361 104360382 CTACCACTGTCTATCCAAGAGG 60 104360421 104361679 GCTGAAGACCTGATATTGCAG 59 NA Rattus norvegicus 81 Erf ENSRNOG00000020426 ENSRNOT00000027684 2 1 1 97 1 82116267 82116285 CAAGGACCCTGATGAGGTG 60 82115841 82116207 TATAGTAATAGCGCAGGGCC 59 NA Rattus norvegicus 81 Cldn11 ENSRNOG00000010263 ENSRNOT00000014359 3 1 1 89 2 115832919 115836438 CTCATCCTCCCTGGTTACG 59 115832848 115832867 TGTTAACAGCAGCAAGATGG 59 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050740 ENSRNOT00000067263 1 1 1 60 15 30296309 30296424 GGGATAAACTTTCTCCTGAGAG 58 30296270 30296289 CATGAGCATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Bnipl ENSRNOG00000021116 ENSRNOT00000028671 1 1 1 80 2 196423320 196423338 GTAGACGAATTGGAGACGC 58 196420412 196423276 GCGAGGCAAATCATCTTCC 59 NA Rattus norvegicus 81 Ctsa ENSRNOG00000015857 ENSRNOT00000066028 2 1 1 80 3 161303049 161303067 GTGAACTTACAGTACCGCC 58 161303108 161303687 GATCTGGTATTTCTGTGAGCTG 59 NA Rattus norvegicus 81 Homer2 ENSRNOG00000061450 ENSRNOT00000087785 3 1 1 80 1 143451576 143454406 ATCATTCCCAAGAATCTGGGT 59 143451516 143451535 AGGCTTTCTCGTCATCTGTC 60 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000081015,ENSRNOT00000084918 2 2 3 81 20 3736930 3736948 GGAACAAGTCCCTCCTGAG 59 3736724 3736887 CTTCAAGTGCTTCAAGGTGTC 60 NA Rattus norvegicus 81 Fkbp9 ENSRNOG00000005478 ENSRNOT00000007821 1 1 1 80 4 87193402 87197747 TGACTCCAGCTATTCACGG 59 87197791 87197809 AAGCCTTCATCCATCCCAG 60 NA Rattus norvegicus 81 Sptb ENSRNOG00000006911 ENSRNOT00000009028 3 1 1 80 6 99681588 99681609 GGATTACGGAGAAAGAGATGGT 60 99681287 99681548 ACTTGTCACGGAGCATAGTC 60 NA Rattus norvegicus 81 Shh ENSRNOG00000006120 ENSRNOT00000008497 1 1 1 82 4 722213 727086 CTGATGACTCAGAGGTGCA 59 722149 722167 ACTCGAAGCTTCACTCCAG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070,ENSRNOT00000009114,ENSRNOT00000078744 1 3 3 80 10 86387188 86387211 GAATCCTAATCAAACGAAGGAGAC 60 86387248 86387356 GCTCCACTAACTCAGTTTCCT 60 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950,ENSRNOT00000017323 2 2 2 80 4 120295797 120298570 AACTCATTGAGCTTCTGAAGTC 59 120295738 120295758 AGTGATCCACAGACATAAGGA 58 NA Rattus norvegicus 81 Atp8b3 ENSRNOG00000024975 ENSRNOT00000039813 2 1 1 80 7 12054152 12054170 GGGAAGAAAGGGTCTACCA 58 12054213 12054318 GGTTTCGGACTAACACTGAC 59 NA Rattus norvegicus 81 Prdm11 ENSRNOG00000008674 ENSRNOT00000066526 2 1 1 80 3 81871478 81872536 TCAGATCCTGCAGCTTCAG 60 81871416 81871435 GTCTGCAGAATCCACTTCCT 60 NA Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 2 2 2 80 1 90512426 90517106 TGACTCCAGAATAAGCCGTC 60 90512365 90512386 CGGTCGATGAAATAATGTTGCT 60 NA Rattus norvegicus 81 Scp2d1 ENSRNOG00000009461 ENSRNOT00000012524 3 1 1 60 3 138975111 138975129 ATCAAAGAAGGAGGAGCCC 59 138975151 138975171 TGATGTCAAGCTGAAAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 3 2 2 80 5 169553005 169553025 GATGCTACTTCAGAAGATGCT 58 169553066 169554076 AACATCTTGGTCATCTGGGA 59 NA Rattus norvegicus 81 LOC100909524 ENSRNOG00000048988 ENSRNOT00000075378 2 1 1 80 6 129005747 129005765 GGATCTTCTCCACCTCAGC 60 129004588 129005703 ACTGTTGTACGACCTTGGA 59 NA Rattus norvegicus 81 AABR07051400.1 ENSRNOG00000047244 ENSRNOT00000072628 1 1 1 80 3 9228080 9228101 TACATACGTCTTCACGATAGTC 57 9227830 9228040 AAGGAAAGGAACATCACCAC 58 NA Rattus norvegicus 81 Wasl ENSRNOG00000006975 ENSRNOT00000009261 2 1 1 82 4 51682100 51682118 CACTTCAGGAATTGTGGGT 58 51680253 51682057 CATCTTCATCTTCATCTGAGGA 58 NA Rattus norvegicus 81 Adamtsl4 ENSRNOG00000049385 ENSRNOT00000074156 2 1 1 80 2 197808480 197808677 TTCCAATTACCTTGCACTTCG 59 197808420 197808441 TAGGATCCTGGAGGATCTACAG 60 NA Rattus norvegicus 81 RGD1563812 ENSRNOG00000031864 ENSRNOT00000042547 3 1 1 60 13 96196201 96196219 ACACCTTCACCATTACAGG 57 96196243 96196261 ATGCTGGGAAGCATTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kifc2 ENSRNOG00000060123 ENSRNOT00000085152 2 1 1 80 7 117724240 117724367 CTCCACTCTAGATGGCTCTC 59 117724410 117724428 GTCTCATCCCTTGGTACCT 58 NA Rattus norvegicus 81 Galnt5 ENSRNOG00000004645 ENSRNOT00000006319 2 1 1 80 3 44068609 44068628 GTGACAACAGAAACAACAGG 58 44068671 44071341 AAACAATGTGGTCCACCAG 58 NA Rattus norvegicus 81 Rn60_2_2280.3 ENSRNOG00000049591 ENSRNOT00000074779 2 1 1 60 2 208514336 208514354 CAGAGATGATGACGTTCCC 58 208514294 208514314 CCTTTAAAGTCCCGAACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049136.1 ENSRNOG00000058501 ENSRNOT00000051752 1 1 1 60 5 107505206 107505224 TATCCCTGTCCTGCATGAG 59 107505164 107505184 TGACTCCTTTGATGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mvp ENSRNOG00000020182 ENSRNOT00000027360 3 1 1 80 1 198421436 198421454 GGAGATGACAGAGGCACTG 60 198421049 198421392 TGGAGAAGTTTCACCTGCA 59 NA Rattus norvegicus 81 Lrp10 ENSRNOG00000011592 ENSRNOT00000015468 1 1 1 80 15 33113706 33113725 CTATGGACAGCTTATTGCCC 59 33113768 33113877 AGCACAGAGTTGTCATTGG 58 NA Rattus norvegicus 81 Mmp12 ENSRNOG00000030187 ENSRNOT00000011727 2 1 1 80 8 5606661 5606679 TGCTTGTGTCCTTACAGGT 59 5606720 5607742 ATCTTGACAAGTACCATTCAGC 59 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576,ENSRNOT00000082855 1 2 2 80 11 87063332 87066619 CAAAGAAATGGAGTCATGCAC 58 87067015 87067034 TGGACCTGATACTGCTTCTC 59 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 1 2 2 80 8 94841370 94841391 CTGACTATACCTGGGAATACGA 59 94841430 94850097 CGATGGAATATTTGTGAGCCT 59 NA Rattus norvegicus 81 Hnrnpa0 ENSRNOG00000039876 ENSRNOT00000061231 2 1 1 67 17 6910016 6910034 GTGAAGAAGCTGTTCGTGG 59 6910065 6910083 GAGAAGTGCTCGATCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcorl1 ENSRNOG00000005076 ENSRNOT00000006805 1 1 1 80 X 135202228 135204180 GTCAGTCTGGAAGCATCTG 58 135204224 135204242 CCTCTGTAGGGAAGACCTC 58 NA Rattus norvegicus 81 Igfbp7 ENSRNOG00000002050 ENSRNOT00000002809 3 1 1 101 14 33067484 33067502 AGAACTCTTGCCTGGTGAC 60 33067563 33068161 TTACTTAGAGGAGATACCAGCAC 59 NA Rattus norvegicus 81 Krr1 ENSRNOG00000004035 ENSRNOT00000063917 1 1 1 80 7 54765972 54765992 CAGGAAGAACGAAACAAAGCA 60 54766031 54766973 CTTCGTTTCAGTAGAAGCTTCC 59 NA Rattus norvegicus 81 Sult4a1 ENSRNOG00000046975 ENSRNOT00000075099 2 1 1 81 7 124967080 124970326 GTTCATGAACGACAAATTGGG 59 124967019 124967037 CACATTTGCGTCCATTCGA 59 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 3 2 2 80 8 55045944 55045965 GAACTAGAGAAGCAAATGGAGG 59 55044507 55045904 ACTTCTCATCCGACTTGAGC 60 NA Rattus norvegicus 81 LOC498555 ENSRNOG00000038074 ENSRNOT00000057931 2 1 1 60 15 75067626 75067647 GATGAGAAGAAAGAGGAGTCTG 58 75067667 75067686 AATCAAACAGGCCAAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mall ENSRNOG00000015599 ENSRNOT00000021082 1 1 1 60 3 120276578 120276596 ACATCAATGTTGCAGCCTC 59 120273888 120273907 GCATGCAGGATATAGAGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr222 ENSRNOG00000019581 ENSRNOT00000026487 1 1 1 60 1 171009422 171009442 ATTGTTCCCAAGATGCTAGTC 58 171009382 171009401 ACCCAGCAAATGAAATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr16 ENSRNOG00000019744 ENSRNOT00000026724 3 1 1 60 18 46149336 46149355 GCTATTGTCCTGACTGTGAG 58 46149377 46149396 CTGTGTAAATGGACCTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb4r2 ENSRNOG00000020382 ENSRNOT00000027619 1 1 1 60 15 34447701 34447722 CCTTGGCTTTCTTTAGTTCCAG 60 34447742 34447761 AAATCACCCGCAGTAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912505 ENSRNOG00000052339 ENSRNOT00000084063 2 1 1 60 3 73676748 73676767 CTTGTTCTTGTGTCCTACCT 57 73676707 73676725 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100125364 ENSRNOG00000015597 ENSRNOT00000020889 1 1 1 253 1 56949712 56949730 GACTACACTACTTCCGGGC 60 56950129 56950147 TGCCAGGATCATCAACAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627,ENSRNOT00000045766,ENSRNOT00000037974 1 3 3 80 9 73399543 73416483 ACAGAGAAACAGCAGAGGA 58 73416527 73416545 GTTCACCTTTCAGGACTGC 59 NA Rattus norvegicus 81 RGD1563145 ENSRNOG00000029227 ENSRNOT00000051343 2 1 1 60 3 155192366 155192384 GGAACTTAAATTGGCCACG 57 155192324 155192343 TTTGTACACATTCCGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362909 ENSRNOG00000028279 ENSRNOT00000055889 3 1 1 88 4 161700823 161705401 CCAAACTTCAAGAAGTCCCA 58 161705452 161705470 TTATTGGGAAGTGGGTTGG 57 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000088680 1 1 9 60 9 81528009 81528029 TAGCCATCATCTAAGTTTGCC 58 81528051 81528069 CAAGCTACACCATCATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0707.3 ENSRNOG00000051215 ENSRNOT00000076817 1 1 1 60 X 69744285 69744303 TACAAGGAAGTCAGCACCA 59 69744243 69744261 AAGATTCCAACACTGCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0707.3 ENSRNOG00000051215 ENSRNOT00000076817 3 1 1 60 X 69744113 69744131 AAAGTGGTTGAGTTCTGCT 57 69744071 69744089 CCTTTCTCATCGGGTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrna3 ENSRNOG00000013829 ENSRNOT00000019307,ENSRNOT00000086731 3 2 2 80 8 59605066 59605084 TGGCTAATGTGTCCCATCC 60 59604899 59605024 TCTGGTTTACTTCATCCACCT 59 NA Rattus norvegicus 81 Rad51d ENSRNOG00000021780 ENSRNOT00000038376 3 1 1 83 10 70240461 70240481 CCCTTAAATGGTGCAGATCTC 59 70234580 70240416 TAGTTTGTCCAGGCTTCCG 60 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125,ENSRNOT00000090170 3 2 2 80 13 49901998 49902019 CAAGTATGTGTATGATGCCCTG 59 49902058 49903414 CTGGACTCAATCAACCTTGTG 59 NA Rattus norvegicus 81 Fut11 ENSRNOG00000009274 ENSRNOT00000012300 3 1 1 93 15 4033689 4033708 ACATTGCTCAGTTGTCACAC 59 4031645 4033633 ATTTCCTTCCAGCTGTCGT 59 NA Rattus norvegicus 81 Pgm1 ENSRNOG00000009889 ENSRNOT00000013785 2 1 1 80 5 118776122 118776142 ACTTGAAGGTAGACCTCAGTG 59 118776184 118777486 CGATCTCCACTGTGAAGGG 60 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 2 2 3 80 5 159956691 159957083 CTTCAACAGTGAACAGGAGAC 59 159956631 159956651 ATCTCTGGTAAGTCAAAGGGT 59 NA Rattus norvegicus 81 Rnf146 ENSRNOG00000011588 ENSRNOT00000015421 2 1 1 80 1 30866701 30872096 ATCTGTGATGGAAATGATGGC 59 30872137 30872156 TCACTCGCCTTCTTATTGGT 59 NA InUTR Rattus norvegicus 81 Olr1230 ENSRNOG00000049352 ENSRNOT00000072547 1 1 1 60 4 1418101 1418120 TGGATTTCCTGCAGTAACAC 58 1418142 1418161 TAGTTCCAACCACAGCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam5 ENSRNOG00000020694 ENSRNOT00000028096 1 1 1 101 8 22054575 22054672 TCACGGTGGAATATGGTCC 59 22054737 22054755 TCCCATCAACTTCACAGGA 58 NA Rattus norvegicus 81 Wdr25 ENSRNOG00000004733 ENSRNOT00000006281 1 1 1 81 6 132929907 132931313 TCTTCCATGAGCGCTACAC 60 132931358 132931376 TAGTTGCCATTGGTTTGCG 60 NA Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 2 1 1 61 3 165692664 165693414 TTTAACTGCTGCTATCCAGG 58 165692622 165692640 CGGTCCAAGTCTTTCATGC 59 NA DesignNoJunction Rattus norvegicus 81 Rgcc ENSRNOG00000042960 ENSRNOT00000068216 2 1 1 80 15 61555257 61555276 ATGAGAAGCTGAATTCTCCG 58 61553555 61555214 CACCTAATTTGGCTTTCCG 57 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617,ENSRNOT00000084760 2 2 2 81 1 281825356 281825375 GAGAACTCATACAGAACGGT 57 281818530 281818919 GATGGACTGTTGTAAGCCA 58 NA Rattus norvegicus 81 Grm7 ENSRNOG00000005662 ENSRNOT00000056570 1 1 1 80 4 142918315 142918335 TATCAAACAGCTCTTGGACAC 58 142918373 142926521 GCAAGGATCTGCTTTATATCCTC 59 NA Rattus norvegicus 81 Slc30a6 ENSRNOG00000005856 ENSRNOT00000007919 2 1 1 80 6 22208347 22208365 GGCCCTTTCTTTCAACCTG 59 22207121 22208303 CTCGTACTTGCAGCTTCAG 59 NA Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 2 2 2 81 X 14506269 14530136 CATTACTACTGGAAGATGCGTC 59 14530178 14530196 GGCTAAGATGTTGCAACGT 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 2 2 2 80 4 56429321 56431098 TGTCTCAGGTGGAAAGAAGAG 60 56429261 56429279 TCTACTTGCTCTTCCACCC 59 NA Rattus norvegicus 81 Olr197 ENSRNOG00000017379 ENSRNOT00000023335 2 1 1 60 1 170091936 170091956 TGTTTGTCCTGTCACTAACTG 58 170091896 170091917 CTGTGTTCTTTCCAGATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agrp ENSRNOG00000039001 ENSRNOT00000059628 2 1 1 80 19 37526903 37527092 CCAGAGTTCTCAGGTCTAAGTC 60 37526844 37526862 CAAAGCTTCTGCCTTCTGC 60 NA Rattus norvegicus 81 Mtmr11 ENSRNOG00000021176 ENSRNOT00000056262 1 1 1 80 2 198305639 198305858 TCGATGTTGCTACCAGTCTC 60 198305900 198305919 GTGCAAATGCTCTTCTGACC 60 NA Rattus norvegicus 81 Arl1 ENSRNOG00000005763 ENSRNOT00000007623 3 1 1 85 7 29286909 29286931 GGATTTAATGTAGAGACGGTGAC 59 29286974 29288392 CAGTATGGCCTGATACTTGTC 58 NA Rattus norvegicus 81 Commd3 ENSRNOG00000016383 ENSRNOT00000022201 2 1 1 81 17 85357780 85357798 CCGAGAGCGAATAGAACTG 58 85357940 85358289 TCTACCTATACTTCCCAGTAGG 57 NA Rattus norvegicus 81 Commd3 ENSRNOG00000016383 ENSRNOT00000022201 3 1 1 82 17 85357779 85357798 ACCGAGAGCGAATAGAACTG 60 85357939 85358289 TCTACCTATACTTCCCAGTAGGA 59 NA Rattus norvegicus 81 LOC100910259 ENSRNOG00000048823 ENSRNOT00000074399 1 1 1 80 1 282719624 282719643 TGGAGAGTGGAGTAGTTGTG 59 282719682 282720442 CAGATAGATTGGCCACTATTCTG 59 NA Rattus norvegicus 81 LOC100910259 ENSRNOG00000048823 ENSRNOT00000074399 3 1 1 81 1 282719667 282720429 CTCTGAGATGGTTTACAGAATAGTG 59 282720468 282720486 TCTTAGGCACTGCATCAGG 60 NA Rattus norvegicus 81 AABR07017694.1 ENSRNOG00000047938 ENSRNOT00000074419 1 1 1 80 15 30174050 30174169 GGATAAACTTTCTCCTAAGAGTTGC 60 30173994 30174013 AGGCTTCTTCAGAGACAGTG 60 NA Rattus norvegicus 81 AABR07014974.1 ENSRNOG00000052298 ENSRNOT00000063985 3 1 1 80 14 42008942 42008962 CCGAGATTCCTCTATTCTCAG 57 42009004 42009908 ATCAGGAATTTGCTGGAGC 58 NA Rattus norvegicus 81 Car9 ENSRNOG00000017073 ENSRNOT00000023060 1 1 1 80 5 59011026 59011046 TTCTCAGAACTTCATGAAGCC 58 59011088 59012225 TTCTTCTGGACTCTCCTGC 59 NA Rattus norvegicus 81 LOC100911109 ENSRNOG00000048056 ENSRNOT00000065052 1 1 1 80 3 151611629 151611768 CTGACTCTAAGCCAATACCAC 58 151611809 151611828 GAGTTTACTCAGTTCTGCCT 57 NA Rattus norvegicus 81 Pqlc3 ENSRNOG00000005126 ENSRNOT00000007071 3 1 1 80 6 42291883 42293848 GACCTGACAATTCTTCTACGT 58 42291823 42291841 CTTCCGGTAGTGAAGTACC 57 NA Rattus norvegicus 81 RGD1310495 ENSRNOG00000000589 ENSRNOT00000000720 3 1 1 80 20 45124596 45124615 GCAAGACAGCAGTCTTACTG 59 45124294 45124555 TAAGTTTGGCTCCTGTATCCA 59 NA Rattus norvegicus 81 LOC687110 ENSRNOG00000031645 ENSRNOT00000042026 2 1 1 60 3 78279088 78279108 CAATGTACTTCTTCCTTGCCT 58 78279048 78279069 GAGAAGGCAGTGGAATAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enkur ENSRNOG00000018631 ENSRNOT00000025140 3 1 1 82 17 88095191 88095215 CACTTCCGAGAGTATTTATAACCTC 59 88086656 88095157 CTTTAAACAGTGATGAGTACCTAGG 59 NA Rattus norvegicus 81 Thoc5 ENSRNOG00000008456 ENSRNOT00000011281 2 1 1 80 14 85157328 85157346 TTGGATGATAAGCGCAAGG 58 85157390 85157981 CACACTGTTGTCTTTGCAC 58 NA Rattus norvegicus 81 Myl10 ENSRNOG00000028981 ENSRNOT00000041654 1 1 1 109 12 23020636 23021494 GGAGTTTAAAGAGGCCTTCAC 59 23019377 23019396 CGTTCTTGACGTTTATGCGA 59 NA Rattus norvegicus 81 Micb ENSRNOG00000057645 ENSRNOT00000083211 1 1 1 88 1 79769686 79769704 TGAGAATCTGCCGAAGGAG 59 79769756 79769977 GAGTGTATGGGCCTTTGTC 58 NA Rattus norvegicus 81 Hs3st2 ENSRNOG00000017659 ENSRNOT00000023773 3 1 1 104 1 191345807 191345826 CTGGAGTTTATCCGAGTGCA 60 191345893 191472796 CATCAGGCTCCTGTACCAG 60 NA Rattus norvegicus 81 Adora2b ENSRNOG00000002922 ENSRNOT00000003966 3 1 1 80 10 48569938 48569957 AGAGCTCCATCTTTAGCCTC 59 48569998 48584980 CCAAACCTTTATACCTGAGCG 59 NA Rattus norvegicus 81 Rn60_X_0773.3 ENSRNOG00000027972 ENSRNOT00000033532 3 1 1 60 X 77259202 77259222 ATCTAAGAAGATTGACCGCCA 59 77259162 77259182 CACATTCCCTTTGACCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1631 ENSRNOG00000047042 ENSRNOT00000041030 2 1 1 60 15 27484724 27484744 TTTATAGCCTTCGTAACTCGG 58 27484684 27484707 CTCATTCCTAACAGAACTTTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atl3 ENSRNOG00000021203 ENSRNOT00000028787 2 1 1 80 1 222785909 222785927 CTCCGGGCAGTATCTTGAG 60 222785970 222786730 CCAATGTGAGAAGAAGCCTG 59 NA Rattus norvegicus 81 Wdr6 ENSRNOG00000020185 ENSRNOT00000027411 1 1 1 80 8 117360183 117360202 CTAGATGAGTACTGGGACCG 59 117360008 117360140 GGCAAGAGACATGTACCTG 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 2 1 2 87 3 172433195 172433308 GCCATTGAAACCATTGTGG 58 172433364 172433383 CAGCAATGTAGTCCACTCTG 58 NA Rattus norvegicus 81 Lancl3 ENSRNOG00000003756 ENSRNOT00000005042 2 1 1 80 X 14358788 14466149 GCCCAGGAGGTATTGACTC 60 14466191 14466211 CTTCAGAGCATACTGCTTTCC 59 NA Rattus norvegicus 81 Olr149 ENSRNOG00000017138 ENSRNOT00000023002 1 1 1 60 1 169372041 169372062 TGCCAGATGTATTCTTGTTGAC 59 169372002 169372020 GTGTGAGGTATGATGCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc116 ENSRNOG00000001860 ENSRNOT00000041557 1 1 1 80 11 88096921 88096939 ATGAGGGACAAACTCCTGC 60 88096980 88097105 GTGTTGATTCAGAACTTTCCCT 59 NA Rattus norvegicus 81 Tekt5 ENSRNOG00000002571 ENSRNOT00000003465 1 1 1 80 10 5362546 5365657 CCAGATTAGAGATAATCGGGAC 58 5365695 5365716 TCATCAATATACTGTGAGGAGC 58 NA Rattus norvegicus 81 Klhl10 ENSRNOG00000016749 ENSRNOT00000022687 3 1 1 80 10 88372293 88372483 AACATGTATACGCAGTAGGTG 58 88372524 88372543 AAGTATTAGCCACTGGACTG 57 NA Rattus norvegicus 81 Mrgprx2 ENSRNOG00000033665 ENSRNOT00000049722 3 1 1 81 1 103745665 103760738 AATGGAGGAAAGAAACATCAGC 59 103745605 103745625 CAGAGCTGTGATGTTAGTTCC 59 NA Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000090065,ENSRNOT00000041527 1 2 2 75 1 72785759 72785777 GTTCTGCTGTTGGAGATGC 59 72786642 72786660 TGGGCAACAGAGAAGACTG 60 NA DesignNoJunction Rattus norvegicus 81 Rnase12 ENSRNOG00000042612 ENSRNOT00000064936 2 1 1 60 15 27981559 27981578 ATTTGCATGTGGACTACCCT 59 27981518 27981539 AGAATCATGTAGTTGCAGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 3 2 3 90 X 70565953 70566269 TTCAATGAATTCCTGTTCCGC 60 70566319 70566339 ATGCATATGTGACCAGGAGAG 60 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317,ENSRNOT00000079407 1 2 2 80 5 165415730 165415748 CTTCCACTCCGACTACTCC 59 165415791 165416365 CTGCATTCATCCACATCCTC 59 NA Rattus norvegicus 81 Aasdh ENSRNOG00000002137 ENSRNOT00000002907 1 1 1 80 14 33639087 33639108 CTCACAGCCTAGGAATAAACTC 58 33639148 33640161 AGACACAGGATAGACTTCCA 58 NA Rattus norvegicus 81 Olr458 ENSRNOG00000058782 ENSRNOT00000077865 1 1 1 60 3 73162373 73162392 GTCACACTCTTCTATGGCTC 58 73162413 73162433 GGGAATAATTGGAACTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndfip2 ENSRNOG00000024022 ENSRNOT00000039423 3 1 1 80 15 89445321 89447128 CACCTCAAAGAAACCAAGAGG 59 89447169 89447188 CATCATTGCCTACTCTGAGC 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 2 2 2 80 7 34636064 34636082 TGCACAATAAGAGTGAGCC 58 34636123 34641550 ATTCACATTTACCTGAGTGTCG 59 NA Rattus norvegicus 81 Kmt2c ENSRNOG00000007997 ENSRNOT00000010349 1 1 1 80 4 6283390 6284837 GGATAGCTGAGTCACTACCTG 60 6284877 6284897 GAAGTTCCATGAGAGGATTGC 59 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529,ENSRNOT00000085225 1 2 3 60 20 3985657 3985677 CAGTATGATCACCACTACCTG 58 3985951 3985969 ATAGCAGTGGCTCTTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Ms4a14 ENSRNOG00000025805 ENSRNOT00000035812 1 1 1 80 1 227477382 227477403 TAGAGTTCAGCATCTCTGTGAC 60 227474520 227477343 GAAAGAAGAACACAGCCTCTC 59 NA Rattus norvegicus 81 Hspa14 ENSRNOG00000015212 ENSRNOT00000020854 2 1 1 80 17 78749831 78749849 GAAGTGCCAATTGCTTCGT 60 78749891 78750987 GAAGCTCAAATCTTGCTCTGG 60 NA Rattus norvegicus 81 Olr17 ENSRNOG00000057764 ENSRNOT00000077975 1 1 1 60 1 149682539 149682557 TACAATCGGCAAAGTGGTC 58 149682497 149682516 GAGAGGGTTGACTAAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324,ENSRNOT00000015516 2 2 2 112 6 127647472 127649515 AACTGTCTCCAGGGTATCG 59 127647378 127647396 CTGACGTCATGTTCAGGGA 59 NA Rattus norvegicus 81 Got2 ENSRNOG00000011782 ENSRNOT00000015956 1 1 1 81 19 9608495 9611376 GAAGCAATGGTTGCAGGAG 60 9611420 9611439 TTTCTTCAGGTTGGAGACCA 59 NA Rattus norvegicus 81 Apold1 ENSRNOG00000007830 ENSRNOT00000010289 2 1 1 60 4 168752733 168752752 CAGAAACTGTCTGAGAGCCT 60 168752774 168752793 GCTGCTCACTAAGTTCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 1 1 1 87 1 89409705 89416227 CTTCGCAACCATCTACAGG 58 89416278 89416296 GTTGATCTCCTGGCCAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612,ENSRNOT00000081992 2 2 2 80 9 98621736 98624197 ATCATCACTGAGGTGATTAGGA 59 98624233 98624256 CTTGACGTTATCTGACTTCATCTC 59 NA Rattus norvegicus 81 Tgm1 ENSRNOG00000020136 ENSRNOT00000027315 2 1 1 80 15 34388024 34388444 GGAATTATGGCCAGTTTGACC 60 34387964 34387982 GACCTCCATATGGCATCCC 60 NA Rattus norvegicus 81 LOC100909473 ENSRNOG00000054359 ENSRNOT00000077211 1 1 1 60 4 87828292 87828311 TGTGGTCATATACTGGGTGG 59 87828331 87828352 ATACATCCATAACAGGACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc23 ENSRNOG00000026309 ENSRNOT00000051613 1 1 1 80 4 157297626 157297645 CAGATTGAAACTCTGGACGG 59 157295422 157297586 GTCACTGATCATGTTACTCCTC 58 NA Rattus norvegicus 81 Abhd17a ENSRNOG00000018212 ENSRNOT00000024576 3 1 1 81 7 11998476 11998578 TTCCCTAACATCGAGAAGGT 58 11998622 11998640 AGAAGTCGATCACCTCGTC 59 NA Rattus norvegicus 81 Rnpepl1 ENSRNOG00000045775 ENSRNOT00000071411 2 1 1 80 9 100086522 100086542 CTGTTTCGTCTACTACCTGTC 58 100086582 100086875 TATTTCTCCACATAGGCTCTG 57 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 3 2 2 80 19 43937551 43937571 CCGTTGTTGGATGTGTATGAC 60 43936511 43937512 AACATCATACACCGAATGATGG 59 NA Rattus norvegicus 81 Cdca3 ENSRNOG00000015529 ENSRNOT00000020803 1 1 1 80 4 157350841 157351309 ACACTACGACAGGGTAAGC 59 157351351 157351371 TCCAGTTCCAAGAATGACTCC 60 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 1 2 2 80 6 135282102 135283469 CCTTCTGGTGAAGGTTGAG 58 135283511 135283531 TCATACAGCTGTTCAAACTCC 58 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 2 2 2 81 6 135282101 135283469 TCCTTCTGGTGAAGGTTGAG 59 135283510 135283531 TCATACAGCTGTTCAAACTCCT 60 NA Rattus norvegicus 81 Fgf23 ENSRNOG00000052205 ENSRNOT00000078299 1 1 1 80 4 159622543 159622561 CCAGGAACAGCTATCACCT 59 159622604 159627833 TCAGGGCACTGTAGATAGTC 58 NA Rattus norvegicus 81 Fgf23 ENSRNOG00000052205 ENSRNOT00000078299 2 1 1 81 4 159622603 159627832 AGACTATCTACAGTGCCCTG 58 159627876 159627894 AGGAACCTTCTGGTCATGG 59 NA Rattus norvegicus 81 Hs3st5 ENSRNOG00000000605 ENSRNOT00000000743 1 1 1 117 20 40539599 40543724 GAGCTTGGATAGGCTCCAG 60 40543804 40543823 GAACTCATGCAGTAAGCCTC 59 NA Rattus norvegicus 81 AABR07016863.1 ENSRNOG00000057795 ENSRNOT00000074803 2 1 1 112 15 2532621 2535250 CTAAAGAGGATGGACTCGCT 59 2535325 2535343 AGCAATCGCTGTAGTGAGG 60 NA Rattus norvegicus 81 Fsip1 ENSRNOG00000005888 ENSRNOT00000007808 3 1 1 80 3 110015806 110017024 CCTGTCAAGATTGACATGGT 58 110015745 110015766 CCTTCTTTCTTCCACTCTACTG 58 NA Rattus norvegicus 81 Impdh1 ENSRNOG00000020032 ENSRNOT00000027173 2 1 1 80 4 56484718 56484738 GGAGGAATTGGTTTCATTCAC 58 56484298 56484677 TTGCTCAAACTTCTTGACCT 58 NA Rattus norvegicus 81 Olr1641 ENSRNOG00000047787 ENSRNOT00000060439 1 1 1 60 15 28834933 28834953 ACTGTTGTCACTCCATTACTG 58 28834893 28834912 AATTCACTTCCTGGTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hopx ENSRNOG00000024689 ENSRNOT00000049774 3 1 1 90 14 33355095 33355113 AACAAGGTCAACAAGCACC 59 33355166 33361767 TAAACCATTTCTGCGTCTGC 59 NA Rattus norvegicus 81 Fas ENSRNOG00000019142 ENSRNOT00000025928 2 1 1 88 1 252618625 252618643 GAATACCAAGTGCAGGTGC 59 252618695 252620656 CTTCAAGTCCACACGAGGT 60 NA Rattus norvegicus 81 Fam71e1 ENSRNOG00000031739 ENSRNOT00000043724 1 1 1 60 1 100505381 100505399 GAGGATGAGGATGAGGTCG 59 100505423 100505981 CCTCTGTGGCATGAAACTC 59 NA DesignRelaxed Rattus norvegicus 81 Hist1h2ac ENSRNOG00000056411 ENSRNOT00000077985 1 1 1 122 17 44520749 44520767 GAGGGACAACAAGAAGACG 58 44520853 44520871 ATATTAGGCAGGACACCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501189 ENSRNOG00000019128 ENSRNOT00000026010 2 1 1 80 9 103117982 103156831 ATGCGGTCAGAGGTTACTG 60 103117920 103117938 TGGCAAGGGTGTACATGAG 60 NA Rattus norvegicus 81 Olr481 ENSRNOG00000031051 ENSRNOT00000040041 2 1 1 60 3 73484363 73484384 CAGCTCAAGTATGTTTCTTCAC 58 73484324 73484343 ATTACAGACAGCAGGAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhbdd2 ENSRNOG00000001443 ENSRNOT00000001962 2 1 1 80 12 24095613 24098139 CCTATCATATGGCCTCACCT 59 24095552 24095572 AAGGGAAACTTCTGATCAAGC 59 NA Rattus norvegicus 81 Olr848 ENSRNOG00000049790 ENSRNOT00000039903 3 1 1 60 5 68619610 68619631 AGCAAAGAGGTGTATGTATCCA 59 68619651 68619670 CTGAGTTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000072791 1 1 3 80 9 111279549 111279569 CAAGTGGATGACTTTCTTGCT 59 111279610 111280813 GGCCACAGATGACATTTCAG 59 NA Rattus norvegicus 81 Nub1 ENSRNOG00000009282 ENSRNOT00000045311 3 1 1 80 4 6957940 6957964 GGTGTTGTTTAGACTCTACTTGC 60 6957882 6957901 TTGAGATATTCCCGAGCCTC 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356,ENSRNOT00000090808,ENSRNOT00000008972 2 3 3 81 4 56649255 56649276 GATCCTCCCTTCAGACTATGAC 60 56649318 56650841 CTTGCCATCCTTGTCTTGG 59 NA Rattus norvegicus 81 Maoa ENSRNOG00000002848 ENSRNOT00000066674 2 1 1 80 X 6601519 6606643 ACATATACTGTGAGGAATGAGC 58 6601460 6601480 TAAGATTCTGTTCTGGGTTGG 58 NA Rattus norvegicus 81 Gdpd4 ENSRNOG00000028470 ENSRNOT00000034886 2 1 1 80 1 162923043 162940354 TACGTAAGCGTTGATCATGTG 59 162940392 162940414 TGGTAGGACCTCTATGATATTGG 59 NA Rattus norvegicus 81 Olr850 ENSRNOG00000057655 ENSRNOT00000079848 3 1 1 60 5 69516491 69516510 CTCTATGTATGCGAAACCCA 58 69516450 69516471 TGAAATTCCGAACTTGTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf7 ENSRNOG00000046121 ENSRNOT00000073646 1 1 1 80 10 104851955 104852650 ACTGCTCAAATTCCAGAGGT 59 104851500 104851520 ATAGCTAGACGGGAAGAAAGG 59 NA Rattus norvegicus 81 AC108631.1 ENSRNOG00000021066 ENSRNOT00000028600 3 1 1 60 1 228504291 228504309 AGACCATTCACTGCTCTCC 59 228504249 228504270 GGGAAATAACTGTGAAGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acer3 ENSRNOG00000036866 ENSRNOT00000019987 3 1 1 81 1 163216299 163216319 GTGCAATTCAAGGCTTTAGAG 58 163212210 163216256 GATCCCATTCCTACCACTG 57 NA Rattus norvegicus 81 Pcdhb20 ENSRNOG00000033123 ENSRNOT00000048166 2 1 1 60 18 30583902 30583922 TCCCAGAACTACCAGTATGAG 58 30583943 30583962 ATTTGAACTCGTTTGTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr-rs3 ENSRNOG00000045732 ENSRNOT00000039037 1 1 1 60 1 59903242 59903260 TCCTCTCAGTGGTAGTCCT 59 59903200 59903218 ACAAGCCCATTACCTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scand1 ENSRNOG00000019987 ENSRNOT00000027076 1 1 1 88 3 152382377 152382395 CTTCACGTGACTTGTAGGG 58 152382208 152382325 CTTCTGCGTCTCTAACAGC 58 NA InUTR Rattus norvegicus 81 LOC499136 ENSRNOG00000014455 ENSRNOT00000019364 2 1 1 159 1 97785147 97785165 ACACAATGGAGTACTACGC 57 97784023 97784041 ACACGTAGCTTAGGAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhgb7 ENSRNOG00000039454 ENSRNOT00000060461 1 1 1 60 18 30901703 30901721 AACTCAAGTCAGAGCATGG 58 30901745 30901763 GATGGAGTAGGAGACGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 1 2 2 80 3 113320574 113320763 ACCTATGAGGTATTTGCCGA 59 113320805 113320824 GTGCTTCATTGTTCTAGGGT 58 NA Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 1 2 2 80 7 130145797 130145815 CGGGTAGAGGATGATGCTG 60 130145004 130145753 CACATCAACGTGGTCTTGG 59 NA Rattus norvegicus 81 Golga7b ENSRNOG00000015051 ENSRNOT00000020390 3 1 1 80 1 261512997 261513016 AATGAGAAGGTCTTTGCTCC 58 261513057 261514220 GATGGAGATCTCGATAACCCT 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000047903 ENSRNOT00000043386 3 1 1 80 9 105310298 105312121 GATTATGATGGCCTTGGCA 58 105310236 105310256 ACTATAGTCAGTCATCGTGCA 59 NA Rattus norvegicus 81 Tspan8 ENSRNOG00000004411 ENSRNOT00000005909 1 1 1 80 7 58823932 58823952 GTATGTGGTACACTGATCCTG 58 58823992 58829008 GTCACCGGATGTGATAATCTC 58 NA Rattus norvegicus 81 Klrb1 ENSRNOG00000057410 ENSRNOT00000084289 2 1 1 81 4 162787911 162789163 TGTCTTAGTGGGATTCTTGGT 59 162789204 162789224 TGTTGGTTCAGTCTTGTTCTC 59 NA Rattus norvegicus 81 Comt ENSRNOG00000001889 ENSRNOT00000050269 1 1 1 80 11 86731440 86731458 CATGGAGATGAACCCTGAC 58 86731502 86731829 AGGATGGTGACTTTGTCCT 58 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 1 2 2 80 6 134975771 134976814 TGGACATGGAGATTGAAAGGA 59 134976856 134976874 CTTGTCCGAGGAGAACCTG 60 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 1 1 2 80 5 59067488 59067506 CCTTCTGCCTTCTTCTGGT 59 59067548 59067643 GGTGCAACACAACATACTCAG 60 NA Rattus norvegicus 81 AABR07054264.1 ENSRNOG00000050337 ENSRNOT00000075257 1 1 1 80 3 145764989 145765008 CTGGATCCTTCCCAGAAGAG 59 145765050 145765396 CCAATTGTTGCCTACAGCAG 60 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000090301 3 1 4 99 2 118547245 118584993 GAAATATCTACCAGAAGGGAACC 59 118585052 118585070 CATCATACACGTTGGCCAG 59 NA InUTR Rattus norvegicus 81 AABR07047694.1 ENSRNOG00000053101 ENSRNOT00000077885 3 1 1 62 5 43469364 43469383 TTTCAGGTTTACTTGGCGTG 59 43469408 43469428 CATTATTATCCAGCCCGCA 58 NA DesignRelaxed Rattus norvegicus 81 Acot11 ENSRNOG00000007837 ENSRNOT00000010396 3 1 1 80 5 126361010 126361028 TGCTCTGAGAAACAGTGGA 59 126360615 126360966 CTTCAGCTTCACCTTGGAG 58 NA Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000054939 2 1 2 116 10 110139843 110144867 CTACCAAGGTGAAACCAGC 59 110144947 110144965 TGAAACAGCCAAAGAGGAC 58 NA InUTR Rattus norvegicus 81 LOC100912609 ENSRNOG00000048926 ENSRNOT00000075717 3 1 1 60 4 170128808 170128826 CGAGAAGCATCTGACTGAG 58 170128766 170128784 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911319 ENSRNOG00000005067 ENSRNOT00000006725 3 1 1 61 6 7420675 7421187 GACTTCTTGTGCAAGACGG 59 7420632 7420651 TTGTCCAGCATGTTGTTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Copb1 ENSRNOG00000057623 ENSRNOT00000083293 3 1 1 80 1 183709383 183711082 TCTGTCAAGATTTATCGAGGAG 58 183709324 183709344 AGTCATCACACTCTGAATGTC 58 NA Rattus norvegicus 81 Kcng2 ENSRNOG00000053640 ENSRNOT00000088054 2 1 1 226 18 76878921 76878939 CTTTCATGGAGCTTCTGGC 59 76836972 76836990 ACGTTGATTATGACGTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Faim2 ENSRNOG00000053258 ENSRNOT00000085033 2 1 1 80 7 141172599 141172617 TTGGAACCTGATTCTGCTG 58 141171519 141172036 GTGGTGTTGTAGTAACTGGA 57 NA Rattus norvegicus 81 Dnal4 ENSRNOG00000015583 ENSRNOT00000020941 2 1 1 106 7 120988545 120989652 ACAACAATGAGAGTGCTGC 59 120988457 120988475 GTGGGTGATCTCAAACCCA 60 NA Rattus norvegicus 81 LOC100911363 ENSRNOG00000045747 ENSRNOT00000072756 3 1 1 80 1 91058809 91058828 TTTGATACTGACCGATCAGG 57 91058631 91058767 CTGATTCAGGTGGAATCCTG 58 NA Rattus norvegicus 81 Dsg4 ENSRNOG00000022364 ENSRNOT00000038450 1 1 1 80 18 12086645 12087824 TGATTCCTCTGAAATCTACACC 58 12087865 12087883 GTATTGAGCTCCACTCCTG 57 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000021156,ENSRNOT00000079745 3 2 2 81 2 123277059 123277077 TTGCCATCGCTTATTGCTG 59 123276679 123277014 GTACCAATGACTCAGGCCA 59 NA Rattus norvegicus 81 Slc9a3r2 ENSRNOG00000002997 ENSRNOT00000004172 3 1 1 82 10 14006006 14006024 AATACATCCGCTCTGTGGA 59 14005721 14005960 CCCATTCACCTCAATGAGC 59 NA Rattus norvegicus 81 Olr728 ENSRNOG00000051785 ENSRNOT00000049936 1 1 1 63 3 78877468 78877487 CCCTCAGAAATGAGGAAGTC 58 78877511 78877675 TGAGATTTCCTCATTTGACCC 58 NA DesignNoJunction Rattus norvegicus 81 Emc9 ENSRNOG00000019162 ENSRNOT00000026001 3 1 1 82 15 34259549 34262586 TTGGATGATCAGAGCCCTG 59 34259485 34259504 ATAATAAGCACTGCGTTGGG 59 NA Rattus norvegicus 81 Eif3d ENSRNOG00000005804 ENSRNOT00000029753 3 1 1 80 7 119192592 119192610 CTGGGACATTGTTGTCCAG 59 119191948 119192549 ACAGTCAGGAGGTCAAAGTC 59 NA Rattus norvegicus 81 Olr1292 ENSRNOG00000052895 ENSRNOT00000073166 3 1 1 60 15 36286951 36286972 GTACTTGCAGTTCTCACATCTC 59 36286912 36286931 TACATGAATGCACCAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf4b ENSRNOG00000026023 ENSRNOT00000037955 2 1 1 80 18 6233591 6249303 AGCCAAGCAACTAATAGTCC 58 6249346 6249364 CTCAATGGTGAGGAATGGG 58 NA Rattus norvegicus 81 AABR07053707.1 ENSRNOG00000017740 ENSRNOT00000023913 3 1 1 95 3 121492815 121492833 GACAGAAGCAGGATTCGGA 60 121492892 121493033 ACAAGAACCACCAGGTGAG 60 NA Rattus norvegicus 81 Dph3 ENSRNOG00000019727 ENSRNOT00000026742 2 1 1 80 16 8207315 8207336 TTTCAATATGACGAGGACACAG 59 8206849 8207276 CAAATCTTCCTTGGTGATGGA 58 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 1 2 2 97 8 117065069 117065517 GTTCAAGCACCAGATGCTG 60 117065578 117065596 CCTCCACGGAGAAAGACAG 60 NA Rattus norvegicus 81 Shisa4 ENSRNOG00000007369 ENSRNOT00000009712 3 1 1 90 13 52194317 52194336 CATGTACCCACCTAGTGGTC 60 52194019 52194265 CATATAGGGTGGAGGAGCTG 59 NA Rattus norvegicus 81 Rrp12 ENSRNOG00000048495 ENSRNOT00000073193 2 1 1 80 1 261135420 261136430 TACTTTGCTGCTCTGATGAC 58 261135359 261135377 AAGGTTCAGTAGGTACGCA 58 NA Rattus norvegicus 81 LOC100362432 ENSRNOG00000019811 ENSRNOT00000026932 1 1 1 80 16 8324511 8335453 TAAATGTACAGGTGGTCTTCG 58 8324451 8324472 TTATACAGTGCATAGACACTGG 58 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000048215 ENSRNOT00000075065 3 1 1 82 17 43617431 43617449 TCCTGGAGAACGTAATCCG 59 43617495 43617513 GTAGACCACGTCCATAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769,ENSRNOT00000028814 2 2 2 80 2 198829030 198829048 CTGGTGTCCAATGAAACCC 59 198829090 198829189 CTATACTGGAGACCATCCAGC 60 NA Rattus norvegicus 81 Ap1m2 ENSRNOG00000043093 ENSRNOT00000066340 2 1 1 80 8 22329251 22329356 GTTAACCTTCTGGTGAATGCT 59 22329191 22329209 AGACAGAAACACCTTCAGC 58 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709,ENSRNOT00000031509 1 2 2 80 5 58304344 58307177 CTTGAAGAACCAAGCAGCG 60 58304282 58304301 ACTTCAGGGTTAACCCAGTG 60 NA Rattus norvegicus 81 Ppm1f ENSRNOG00000037909 ENSRNOT00000002530 3 1 1 80 11 88323208 88323226 CCAGGTCATCCTGGTACAG 59 88318651 88323165 CGTGATTTCTCATCCTGTCG 59 NA Rattus norvegicus 81 Qtrt1 ENSRNOG00000007158 ENSRNOT00000010030 3 1 1 82 8 22451787 22452675 TTGCCTGAAAGAGATGACCA 59 22452720 22452738 AGAACTGCTCCTTGCTCTC 59 NA Rattus norvegicus 81 Mir221 ENSRNOG00000035631 ENSRNOT00000053754 3 1 1 60 X 3684528 3684547 GTGTTTGTTAGGCAACAGCT 59 3684569 3684588 GAGAAATGCTTCCAGGTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 2 2 2 80 14 38217784 38221173 CCATTCCTGTGGAATGTCTG 59 38221608 38221628 GTCTCTTGCATGAATAGGGTC 59 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380,ENSRNOT00000046025 1 2 2 80 1 189254034 189254052 AGGTTCCCAATAACCACCA 59 189254093 189259064 GAACTTGTACCTTGTCAGATCC 59 NA Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 2 2 2 80 12 25068420 25068954 TTGTCCTTTGTGAGATTATCGG 59 25068994 25069013 TTACATTGAGGCCAAAGTCC 58 NA Rattus norvegicus 81 LOC100912252 ENSRNOG00000042206 ENSRNOT00000068160 2 1 1 92 17 5359166 5359184 TTCTCCTGTCTTCTGTTGC 57 5359240 5360015 CTAGGAACTGCTTTCCTGG 58 NA Rattus norvegicus 81 Creld2 ENSRNOG00000004659 ENSRNOT00000006357 2 1 1 80 7 129813115 129813640 GAAGTATGAATTCAGTGAGATCCG 60 129813678 129813697 AGTTGGTTGCACTCAAAGTC 59 NA Rattus norvegicus 81 Olr690 ENSRNOG00000047252 ENSRNOT00000073165 3 1 1 60 3 78065965 78065983 TGTCTCTAGCCCTACACTG 58 78065923 78065942 TAAAGACAGGAAAGCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl40 ENSRNOG00000049686 ENSRNOT00000071159 2 1 1 80 11 86279224 86280434 GAGGTTCTTGGATAAATCAAGACAG 60 86280472 86280490 TTCAGCAGAAGAGCTCTCC 59 NA Rattus norvegicus 81 Rn60_X_0774.1 ENSRNOG00000060085 ENSRNOT00000084086 2 1 1 80 X 77323060 77323078 CAATAACCTCCAACCAGGC 59 77322878 77323018 ACATCTGAAGGACAACTTTGG 59 NA Rattus norvegicus 81 Pnmal1 ENSRNOG00000027944 ENSRNOT00000029825 2 1 1 85 1 78894957 78894975 CCAACCTGATGATGCACTG 59 78895022 78895566 TCCTGAAATCTTTGGAGACAC 58 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639,ENSRNOT00000089665 3 2 2 80 16 39985831 39987114 ACATGAAGCTACTCCAAGC 58 39985769 39985788 AGATGCAACCTTTGTCTTCC 59 NA Rattus norvegicus 81 Klhl6 ENSRNOG00000001908 ENSRNOT00000002617 1 1 1 80 11 84775963 84775984 GTGAGAATAAGAAGTGGGTGGA 60 84776023 84781013 GCTGTGTTTCTTTACCACCTG 60 NA Rattus norvegicus 81 Klhl6 ENSRNOG00000001908 ENSRNOT00000002617 2 1 1 80 11 84772749 84772767 CTCATTAGACAGTGCCCTG 58 84772810 84775796 CGAAATAATCTCGTTGCCAG 57 NA Rattus norvegicus 81 Sec61gl ENSRNOG00000049016 ENSRNOT00000073045 2 1 1 82 5 56753665 56753684 TGAAACTGATCCACATCCCT 59 56751834 56751852 CATCAGATCCGAGGGAACC 60 NA DesignNoJunction Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000085887,ENSRNOT00000009904 2 2 3 80 4 162019665 162019683 GATTGGCTCTGAAACTCGG 59 162018981 162019623 ATGTTAGCACTAAGACACCGA 59 NA Rattus norvegicus 81 Kcnk9 ENSRNOG00000009265 ENSRNOT00000012408 2 1 1 97 7 113904650 113937380 AACTATCGGATATGGACATGCT 59 113904574 113904592 ACATAACCAGCGTCAGAGG 60 NA Rattus norvegicus 81 Ifi27l2b ENSRNOG00000026605 ENSRNOT00000032015 3 1 1 89 6 127337000 127337018 CCAAGATGATGTCTGCTGC 59 127336505 127336952 CAAGTACACCTATTGACTGTAGTG 59 NA Rattus norvegicus 81 Rlf ENSRNOG00000027921 ENSRNOT00000046906 1 1 1 80 5 140120078 140128718 GCTATTCAGGAGATTGCAAAGG 60 140120019 140120037 GTTGTCCTGACCCTCAGAC 60 NA Rattus norvegicus 81 Dsg2 ENSRNOG00000016526 ENSRNOT00000022270 2 1 1 80 18 15582359 15591437 AGTTACTTCACAGAGAAAGCAG 59 15582300 15582318 GGAGTAAACGAGAAGGCAG 58 NA Rattus norvegicus 81 Rspry1 ENSRNOG00000060931 ENSRNOT00000090217 2 1 1 80 19 10806013 10806031 CCATTGGAAGATCCACTGG 58 10804156 10805970 CTGGAGTGCATCTTTAGTGG 58 NA Rattus norvegicus 81 Hist1h1d ENSRNOG00000047459 ENSRNOT00000072564 2 1 1 61 17 43734769 43734791 CTCCTTCAAACTCAACAAGAAGG 60 43734812 43734830 CTGCCTTCTTTGCTTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.3 ENSRNOG00000051053 ENSRNOT00000077001 1 1 1 85 X 73903976 73903994 TAGCAAGTGTTCTCCCTCC 59 73904042 73918962 ATGCTAAGGTGTTACTGTGC 58 NA Rattus norvegicus 81 Ptpn7 ENSRNOG00000005807 ENSRNOT00000007833 3 1 1 81 13 51963777 51963795 CTTCTGGGAGATGGTGTGG 60 51963839 51964158 TACACATTTCTCCTTGCCCT 59 NA Rattus norvegicus 81 LOC100910771 ENSRNOG00000047516 ENSRNOT00000007657 1 1 1 80 9 114038293 114039816 TGTATAATGTGCTGCACGG 58 114039860 114039878 GGGAACACTGTAGACACCA 59 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 3 2 2 81 3 15052823 15056826 CATCAGCAGGTTGATGTCTG 59 15056869 15056888 CTTCTGTTTGGAGTCTACGG 58 NA Rattus norvegicus 81 Camk2n2 ENSRNOG00000038184 ENSRNOT00000058131 1 1 1 89 11 83975608 83975626 GACACCAACTCCTTCTTCG 58 83975679 83976478 ATCCTCGATCACCACTCTC 58 NA Rattus norvegicus 81 Clec4b2 ENSRNOG00000027655 ENSRNOT00000038297 3 1 1 80 4 156129153 156129171 ACTTTCAGATCAAGGCCAG 57 156129214 156131038 TCTTCATGCCAGAATGTGAC 58 NA Rattus norvegicus 81 RGD1561113 ENSRNOG00000022681 ENSRNOT00000034930 2 1 1 68 3 11408502 11410654 GAGTATGCTGCCATCAACTC 59 11408453 11408471 GTTCTTCTCCTCCAGGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026,ENSRNOT00000024900,ENSRNOT00000088041 1 3 3 80 2 199894258 199895347 GAGCCATATTAAGTGAATCCCT 58 199894199 199894217 AAGTCTCATAGCCCAGGTC 59 NA Rattus norvegicus 81 Tbcd ENSRNOG00000036658 ENSRNOT00000054913 2 1 1 80 10 110653352 110665509 TTGTGTCCAAGTTTATCACACG 60 110665550 110665568 CCAAGGTACAAAGGCTCCA 60 NA Rattus norvegicus 81 Heca ENSRNOG00000060972 ENSRNOT00000081259 2 1 1 80 1 13049653 13049674 GGATGGAACTCTGTTCTTAAGC 59 13043281 13049613 ATGAGTCTCCCTTGAAGGTG 59 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 1 2 2 80 20 32247687 32253324 ACACATAAAGCAGAACGCA 58 32247625 32247644 TCTCTGAAGCCTTTCAAGGT 59 NA Rattus norvegicus 81 Hiatl1 ENSRNOG00000018227 ENSRNOT00000067979 2 1 1 85 17 2617027 2618597 TTGGCTCAGACAGTCTTCC 59 2616960 2616979 AGTATCTGGAAACCCAAGCC 60 NA Rattus norvegicus 81 Vdac1 ENSRNOG00000006375 ENSRNOT00000008477 2 1 1 80 10 37747318 37749156 ACTAATGTGAATGATGGGACG 58 37749198 37749216 GAGATTGACAGCAGTCTCC 58 NA Rattus norvegicus 81 LOC100364791 ENSRNOG00000005447 ENSRNOT00000007379 3 1 1 99 10 74277412 74277431 CTTTCAGGCATACCTACCCT 59 74251117 74277352 CTGGAAGGACTTGGAAATGAG 59 NA Rattus norvegicus 81 RGD1311892 ENSRNOG00000025948 ENSRNOT00000035404 2 1 1 112 13 53094697 53095449 TGGAGGAAGAAGACTCCCA 60 53094603 53094621 AGATTCAGGTCCTGTTGGC 60 NA Rattus norvegicus 81 LOC691015 ENSRNOG00000043512 ENSRNOT00000068656 3 1 1 60 1 177592035 177592055 CTCTGAACAATCTGAGTGCTG 59 177591995 177592014 TTGCTGCTTAGCACATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcbd2 ENSRNOG00000047796 ENSRNOT00000071426 3 1 1 83 17 8929895 8931096 ACAACAAGGTCCAGATCAC 57 8929830 8929848 TTTCAATGAACTGGGCCAG 58 NA Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 3 2 2 80 2 198833646 198833830 ACTTCCAATCCAGAGACCC 59 198833584 198833604 TCCACACCTCTATTTGTGGAG 60 NA Rattus norvegicus 81 RGD1560608 ENSRNOG00000043137 ENSRNOT00000066715 2 1 1 159 6 135859590 135859608 CTCTATCGTGGTGGAACCC 60 135860711 135860729 ATCATCTGCTTCCTTCCCT 58 NA DesignNoJunction Rattus norvegicus 81 Cmtm4 ENSRNOG00000011009 ENSRNOT00000014749 1 1 1 80 19 821564 823462 GCTGCTGTGATATTTGGCT 59 823506 823524 GCTGACTCTCCATTTCTGC 59 NA Rattus norvegicus 81 Meiob ENSRNOG00000014711 ENSRNOT00000060551 1 1 1 80 10 14191809 14193011 TGTGAGATCGGTTGGAGAG 59 14193052 14193073 TCAAAGAGTTTAACCTCACACC 59 NA Rattus norvegicus 81 Pcdhga9 ENSRNOG00000030352 ENSRNOT00000044434 3 1 1 60 18 30887797 30887815 ACATCCTGGCTGACTTGAG 59 30887836 30887857 AGAGTAATATCGGAATCAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029195.1 ENSRNOG00000003401 ENSRNOT00000004583 3 1 1 80 10 12871102 12871139 GACCGTGTTCACCAAATCTG 60 12871041 12871060 TATGTGGTAGCCACAGTTGG 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245,ENSRNOT00000041577 1 2 2 80 8 22620401 22620420 TCCCTCGGAGAATATGTGGA 60 22620463 22620586 TAGGCAGTAGGCATTCCAG 59 NA Rattus norvegicus 81 Xrcc3 ENSRNOG00000012141 ENSRNOT00000016208 2 1 1 90 6 136371786 136371874 GTCTGCAGGTTTGTGTCTC 59 136371714 136371732 CATCAGTTGCATCAGGAGC 59 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 1 2 2 80 14 39750044 39754679 TTTGGAAGCTATGCTTACACG 59 39754721 39754739 AGGAGCAACCTGAACAGAG 59 NA Rattus norvegicus 81 RGD1561118 ENSRNOG00000034060 ENSRNOT00000040561 3 1 1 60 10 76274832 76274850 GAAGTAGCCACAGGGATGG 60 76274790 76274810 CAAAGATGGTGGTCTTCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xkr8 ENSRNOG00000024312 ENSRNOT00000017618 3 1 1 82 5 150923001 150924560 TACCTGTATAGGTGCCTGC 59 150922937 150922955 TAGGCCAGGTCACATTCAG 59 NA Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000077143 2 1 2 80 20 4067038 4067057 CCATTCCTTCCACAAGATGG 59 4066688 4066996 TGGAATCTCAGGTTCTTGCA 59 NA Rattus norvegicus 81 Odf3b ENSRNOG00000037060 ENSRNOT00000055805 3 1 1 172 7 130350232 130350470 CAAACACCGGTTACAAACTG 58 130350079 130350097 ACCATAGATGGAGAAGGCC 59 NA Rattus norvegicus 81 Tmem222 ENSRNOG00000008564 ENSRNOT00000011357 2 1 1 80 5 151462824 151464122 GGGAAGTATGTCAGTGTTGG 58 151462763 151462782 ACTGATGGTCAGGATAATGC 58 NA Rattus norvegicus 81 Olr1070 ENSRNOG00000008476 ENSRNOT00000011198 2 1 1 60 7 9485116 9485135 AACCGATTTCCTGAACTGAG 58 9485075 9485093 GCATAGGTGTGACTAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1070 ENSRNOG00000008476 ENSRNOT00000011198 3 1 1 60 7 9485116 9485134 ACCGATTTCCTGAACTGAG 57 9485074 9485092 AGCATAGGTGTGACTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uhmk1 ENSRNOG00000002941 ENSRNOT00000003950 1 1 1 80 13 88523585 88526987 CAGAGGACAAGTCTTTGTTGAG 59 88523526 88523545 TCAAACATCCTCCCAGTCAG 60 NA Rattus norvegicus 81 Bag5 ENSRNOG00000011527 ENSRNOT00000015333 3 1 1 61 6 136277590 136279251 GTGCTTGTGAAACTGAACAC 58 136277548 136277569 CCTACTAATAGAAGGGTGTTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tnfrsf14 ENSRNOG00000013820 ENSRNOT00000018494 3 1 1 81 5 172333127 172334284 TCTGTGATCCAGACATGGG 59 172333064 172333083 TAACCTGAGATGCATCTGCA 59 NA Rattus norvegicus 81 Smpd4 ENSRNOG00000001875 ENSRNOT00000043545 2 1 1 80 11 87538687 87538706 TACCGACTCAATGTGTCCAG 60 87538748 87541531 GAAGGACTCTTGATAGGCGT 59 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 2 2 3 81 4 163419649 163419669 TGGATTCTTTCGAAAGAGCAG 59 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311,ENSRNOT00000084432 1 2 2 80 10 59882516 59882534 TTACCTCATCGAGCATCCT 58 59876175 59882475 GGACCAACTTCTATACCAACAG 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311,ENSRNOT00000084432 2 2 2 80 10 59882551 59883669 CTATATTAAGACCTGCATGGCTC 59 59882493 59882513 CGAGTGGTTGCATATTTGAGG 60 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 2 3 3 80 14 763270 763289 AGAAACAAACAGCAGACTGC 59 762045 763232 GTTCCATATGTACTGTCTCATTGG 59 NA Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 2 1 1 60 4 163089799 163089817 AGAGACCTGCAAATTCCAC 58 163088810 163089776 ATCCAATTCAGTCTGGTCGT 59 NA DesignNoJunction Rattus norvegicus 81 Lats2 ENSRNOG00000056343 ENSRNOT00000087978 3 1 1 80 15 37950250 37950752 AGTACTACCAGAAAGGGAACC 59 37950190 37950208 AACGACAGTTGGAAACGTC 59 NA Rattus norvegicus 81 Hpgd ENSRNOG00000010610 ENSRNOT00000014229 1 1 1 80 16 37460912 37474133 TTTCTTCAATAGCAGGGCTC 58 37460851 37460870 GTGTGAATCCGATTATGCCA 59 NA Rattus norvegicus 81 Ppp1r14a ENSRNOG00000020676 ENSRNOT00000028070 1 1 1 83 1 87230813 87230832 GAATTGGACAGTGAGGAGGA 59 87231330 87232653 CTGGACGAAGTCCTCTGTG 60 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855,ENSRNOT00000081679 1 2 2 80 8 17456415 17456436 CAACAGATGCTTCTTGAAAGAG 58 17454707 17456374 AGCAAAGATGATGTGCCTG 59 NA Rattus norvegicus 81 Fstl3 ENSRNOG00000009311 ENSRNOT00000012578 2 1 1 103 7 12809183 12809201 CAACATCAACACAGCCTGG 60 12807660 12809117 CGCAAGAATCTTTGCATGGT 60 NA Rattus norvegicus 81 Notch2 ENSRNOG00000018835 ENSRNOT00000025718 2 1 1 80 2 200307895 200308668 AGGAGATAATAGGCTCTAAGGT 57 200308709 200308727 TGTTCTTGAAGCACTGGTC 58 NA Rattus norvegicus 81 RGD1562114 ENSRNOG00000016193 ENSRNOT00000021677 1 1 1 80 7 12399712 12399733 TTGTTCTACGTAATTACTGGGC 59 12399010 12399675 CTGTGGCTTCTTTAGTCTAAAGG 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 1 4 4 104 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831507 215831525 CAGTATGTCTCCAGGAGGG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076540 3 1 5 62 8 39370496 39378905 TTCCAGCATCTCATGGGTG 60 39370452 39370472 CACTTGCCATGTTTAGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 Pus7 ENSRNOG00000010572 ENSRNOT00000014063 3 1 1 80 4 7922206 7923246 CTGCGTTTGGCATAATACC 57 7923290 7923308 TCACCATGCTATTCCACAC 58 NA Rattus norvegicus 81 Gabrr1 ENSRNOG00000007603 ENSRNOT00000010172 1 1 1 80 5 48400956 48401914 AATCGAAAGCTATGCCTACAC 59 48401952 48401974 CTCTCATCTGTCTTTAAGGAGTC 58 NA Rattus norvegicus 81 Usp7 ENSRNOG00000025496 ENSRNOT00000046232 3 1 1 80 10 7009291 7009309 GTCTTGGTTCACAGTGGAG 58 7009352 7010082 TTTACACCATTTGCCATCCC 59 NA Rattus norvegicus 81 Zfp52 ENSRNOG00000042826 ENSRNOT00000050119 1 1 1 80 1 61421035 61421054 CCTAGACTCTTCTCAGAGGG 58 61421096 61424170 CAGTAGTTCTCCACAGAGAC 57 NA Rattus norvegicus 81 Klhl24 ENSRNOG00000033372 ENSRNOT00000052120 3 1 1 80 11 84615910 84615932 GGTAAATCTATCCTGGGTGGA 59 84615850 84615868 GATACTTGTCGCAGGATCG 58 NA Rattus norvegicus 81 Cnot1 ENSRNOG00000012271 ENSRNOT00000016563 3 1 1 80 19 9722554 9722572 AAACAGCTATTTCCAGCGA 58 9722612 9722878 CTCTGTAGCATTTCTAGTACCTC 58 NA Rattus norvegicus 81 AABR07012635.1 ENSRNOG00000053190 ENSRNOT00000087593 2 1 1 81 2 200820328 200820346 AACAAGGAGGCTCCAAGAG 59 200806169 200820283 GAGGCAGCATTCTGATGTC 59 NA Rattus norvegicus 81 Klrc1 ENSRNOG00000055196 ENSRNOT00000085671 1 1 1 81 4 163458988 163459007 TGGATTCTTTCGAAAGAGCA 58 163458621 163458947 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Klrc1 ENSRNOG00000055196 ENSRNOT00000085671 2 1 1 81 4 163458987 163459007 TGGATTCTTTCGAAAGAGCAG 59 163458621 163458947 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 AABR07025743.1 ENSRNOG00000033638 ENSRNOT00000041833 1 1 1 60 16 47756692 47756713 GAATCCTCAGAAGATGGGAGAG 60 47756651 47756670 ATGAAGTCTCTGATGAGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Tubb1 ENSRNOG00000046151 ENSRNOT00000075148 3 1 1 91 3 172555901 172556597 AGCCTACGGTAAGAAGTACG 59 172556651 172556669 GGATTCCCAATCTGCTGGA 60 NA Rattus norvegicus 81 Olr95 ENSRNOG00000045808 ENSRNOT00000055226 1 1 1 60 1 168478829 168478847 ACGTTACAGCCTTAGTGTG 58 168478787 168478805 AAGGGCAATGAAGAAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361705 ENSRNOG00000049755 ENSRNOT00000048351 1 1 1 60 3 16572116 16572134 CACCCTCACCATCAATCCT 59 16572156 16572176 ACTCTGCTGACAGTAATAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn2 ENSRNOG00000013973 ENSRNOT00000018776 3 1 1 80 3 11415452 11415611 AATATTCACAGCTACCCTCAG 57 11415392 11415411 AAATACCATGGCAAACTGGT 58 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850,ENSRNOT00000064836 3 2 2 80 1 8839729 8839747 AGTGGGATACAGATCCCTC 58 8834858 8839685 ACTTGTTACACCTGTGCTG 58 NA Rattus norvegicus 81 Fam71f1 ENSRNOG00000006132 ENSRNOT00000041207 2 1 1 80 4 56605822 56609842 AGAAACAGTACAGTTCCAGC 58 56613052 56613070 TGTCTTCACAGGGAGTAGC 59 NA Rattus norvegicus 81 Tnfaip6 ENSRNOG00000050792 ENSRNOT00000070792 1 1 1 80 3 37560119 37564015 ATCATCAGCACAGGAAATGTC 59 37564054 37564075 GTATTTAATCTGGAAGCCTCCG 59 NA Rattus norvegicus 81 Tnfaip6 ENSRNOG00000050792 ENSRNOT00000070792 3 1 1 80 3 37545335 37550790 TATGGCTTGAACAAGCAGC 59 37550834 37550852 CCTTGGCTTCTGCATAGGT 60 NA Rattus norvegicus 81 Pon1 ENSRNOG00000008902 ENSRNOT00000011823 2 1 1 80 4 30260774 30260792 CCAGATAAAGTCCGAGTGG 57 30259275 30260733 ATAGACATACTTGCCATCAAGG 58 NA Rattus norvegicus 81 Pdlim1 ENSRNOG00000016166 ENSRNOT00000022000 2 1 1 81 1 259333226 259333244 GTCTCCTCTAGTGACCGAG 58 259328804 259333181 GATGTGCAGGACTTCTTGG 59 NA Rattus norvegicus 81 Pcdhb11 ENSRNOG00000020066 ENSRNOT00000027179 2 1 1 60 18 30497441 30497462 GGGACAATGGAAGAATGATGTG 60 30497481 30497501 GTGGGTTTAAGGAGAAATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1643 ENSRNOG00000013338 ENSRNOT00000017795 2 1 1 60 15 28894758 28894776 CATTGTTGTCACCATCGTC 57 28894798 28894818 GCTCAGAAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl1 ENSRNOG00000009643 ENSRNOT00000012812 2 1 1 83 10 86712036 86714573 AGAGATACGCTCCTTGCTC 59 86714620 86714638 CTTGTGCCTTTCCTTCTCG 59 NA Rattus norvegicus 81 Polr2e ENSRNOG00000013545 ENSRNOT00000018169 1 1 1 80 7 12532996 12533937 ACTATCATGCAGCTGTGTC 58 12533980 12533999 TGCCTTGAACTCTTCAAGTG 59 NA Rattus norvegicus 81 Anapc11 ENSRNOG00000036686 ENSRNOT00000054954 2 1 1 80 10 109775569 109782992 TGCTGTCCAGACTGTAAGG 59 109783036 109783054 GCAGTGCATATGGAAGCAG 59 NA Rattus norvegicus 81 Anapc11 ENSRNOG00000036686 ENSRNOT00000054954 3 1 1 81 10 109775570 109782993 GCTGTCCAGACTGTAAGGT 59 109783038 109783056 ATGCAGTGCATATGGAAGC 59 NA Rattus norvegicus 81 Cdk5 ENSRNOG00000008017 ENSRNOT00000011052 1 1 1 80 4 7286958 7286976 CCAGCTACAACATCCTTGG 58 7287020 7287165 ACACTTCAACAGGTTCTGC 58 NA Rattus norvegicus 81 AABR07065772.1 ENSRNOG00000050859 ENSRNOT00000072338 1 1 1 105 6 140571886 140571988 ATTTCCAAGCTGTGCTCTG 59 140571799 140571817 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599,ENSRNOT00000011324 1 2 2 80 13 53003756 53006101 TGAAGAAGGCCAAGGTAGC 60 53006145 53006163 GGTTCCTCTTGGTCTCCAC 60 NA Rattus norvegicus 81 Rn60_X_0752.4 ENSRNOG00000018301 ENSRNOT00000042584 1 1 1 60 X 74371988 74372008 CATACATCAGTACAGGGAGCA 59 74371948 74371967 CACCATAGGCACATCATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp385c ENSRNOG00000025370 ENSRNOT00000032737 1 1 1 80 10 88543725 88544606 ACCCTCAGAGCAAAGATCC 59 88543663 88543681 CTCTGGTTGATGGGTCTGG 60 NA Rattus norvegicus 81 Kdm4d ENSRNOG00000024726 ENSRNOT00000033932 3 1 1 73 8 12993632 12993650 GAAGGCGCAAATAAGTACG 57 12970446 12970465 AATCTCTTCAGGGATGTGAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 1 2 2 80 11 37928521 37929111 CGAAGGTGATAACTCTGAGC 58 37928460 37928479 TCATGAGTCACCATGAACAG 58 NA Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 2 1 1 61 7 12437419 12437440 AAGGTCAAGAAATGGAAGTTGG 59 12437462 12438759 GAACCTCTCGTGTCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0768.2 ENSRNOG00000031310 ENSRNOT00000048122 2 1 1 60 X 76773550 76773568 CTGAATGGGAAGCTCACTG 58 76773592 76773610 TCACAACGGATACATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0768.2 ENSRNOG00000031310 ENSRNOT00000048122 3 1 1 60 X 76773551 76773569 TGAATGGGAAGCTCACTGG 60 76773592 76773611 TTCACAACGGATACATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363638 ENSRNOG00000029121 ENSRNOT00000045320 2 1 1 81 6 141384167 141384271 CCCTTCCTGGTATCCTGTC 59 141384104 141384122 GTGAGGGAGAGTGACTGTG 59 NA Rattus norvegicus 81 Ntn1 ENSRNOG00000003947 ENSRNOT00000005255 1 1 1 81 10 54762314 54775829 GGACTATGCTGTCCAGATCC 60 54762252 54762271 CACGGAGATGATGTTCACTG 59 NA Rattus norvegicus 81 Pcdh9 ENSRNOG00000038068 ENSRNOT00000057924 1 1 1 60 15 77736019 77736038 AAATCAAAGTGGAGGATGGG 58 77735978 77735996 GTGACCTGGAGTATGGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsk ENSRNOG00000026937 ENSRNOT00000029250 3 1 1 80 2 2884035 2884053 GGAGAAGCATGGCTATCAG 58 2865563 2883992 TCCACACGGTTACTAATGGA 59 NA Rattus norvegicus 81 Trps1 ENSRNOG00000024998 ENSRNOT00000050774 3 1 1 80 7 90253765 90262308 AGACACTACAGGAGAGCAC 59 90253703 90253721 CTCCAACAGTGACTGAGTG 58 NA Rattus norvegicus 81 Amotl1 ENSRNOG00000008990 ENSRNOT00000061616 1 1 1 80 8 13089939 13089960 TTAGTTTCCACCACTTTCACAC 59 13089562 13089622 GACAACTTAAGGCTTTACCCTC 59 NA Rattus norvegicus 81 LOC100911337 ENSRNOG00000047151 ENSRNOT00000073269 1 1 1 60 4 120407924 120407945 TATCAAGCTGGTTTCAAAGCAC 60 120407885 120407903 TCCACCCTTTGTGTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911337 ENSRNOG00000047151 ENSRNOT00000073269 2 1 1 60 4 120407949 120407970 TTCAGGAGCTACTTAGTAAAGG 57 120407910 120407928 ATTACTTGGGCTCTGTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csrnp2 ENSRNOG00000019653 ENSRNOT00000026613 3 1 1 81 7 142124767 142125811 AGCTTCACACCAACATCCA 60 142124704 142124722 AGTACACAGTCACCTGGTC 59 NA Rattus norvegicus 81 Tas1r3 ENSRNOG00000019589 ENSRNOT00000026671 2 1 1 80 5 173311711 173311846 ATCCTATGTACCAGGTTCTCG 59 173311651 173311673 TCCATTGTTGATCTCCTCTACAG 60 NA Rattus norvegicus 81 LOC688424 ENSRNOG00000000252 ENSRNOT00000000269 2 1 1 60 19 3608937 3608956 TAAAGGAAACAAGGCCAAGG 58 3608978 3608997 TTTAGCAGACAACCTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox10 ENSRNOG00000024972 ENSRNOT00000034261 2 1 1 80 10 50560739 50560758 AAGAGATGAAGCTTCACACC 58 50527534 50560696 TTACCACAAGAGCTGTGAG 57 NA Rattus norvegicus 81 AABR07008379.1 ENSRNOG00000053756 ENSRNOT00000047109 1 1 1 60 2 55109029 55109049 GGGAAGATTGTTGTGAACCTC 59 55108989 55109011 ATCTAGGGCTTATAACTCCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem52b ENSRNOG00000058653 ENSRNOT00000079337 3 1 1 89 4 163268008 163269128 ATTTCATCCAGCTTCCTGG 58 163271162 163271180 TATACCAGAGATGCACCCA 58 NA Rattus norvegicus 81 Mief1 ENSRNOG00000017553 ENSRNOT00000023843 3 1 1 80 7 121473125 121473143 GGACATGAAGACAGGTCTG 58 121473186 121473392 GGGCAGAATGTATCTGTGTC 59 NA Rattus norvegicus 81 Elp2 ENSRNOG00000015301 ENSRNOT00000020601 2 1 1 80 18 16564157 16564410 GAAGAACCAATCTCAGGTGAC 59 16564451 16564470 ATCATCGCCAAACACTTGAG 59 NA Rattus norvegicus 81 Eif3g ENSRNOG00000020619 ENSRNOT00000027985 2 1 1 80 8 21915079 21915207 GAGTTACTTCCTGGAGACCC 59 21915018 21915037 TACCTTGTACTCAGTCACCG 59 NA Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000076536 3 1 2 83 10 70370597 70370615 GAGCAAGACAACCACAGAG 59 70375403 70375421 CTTTCCTTGCAGGCAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000055957 1 1 2 95 10 70370602 70370620 AGACAACCACAGAGCTCAC 60 70374939 70374957 GCATACTCAGCTTCCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Hmgn2 ENSRNOG00000051615 ENSRNOT00000082953 2 1 1 82 5 152197819 152197839 GGATGCTAAAGGAGACAAAGC 59 152197293 152197601 TTGGAGGAGCAGGTTTAGC 60 NA Rattus norvegicus 81 Cpe ENSRNOG00000043387 ENSRNOT00000064297 2 1 1 82 16 26989172 26989191 TTGAGAAAGCAGCATCTCAG 58 26990865 26990888 GAAGTTCCGGTTCAGTTCC 59 NA Rattus norvegicus 81 Maf ENSRNOG00000012428 ENSRNOT00000016577 1 1 1 60 19 48196542 48196562 GAACTGGCAATGAACAATTCC 59 48196502 48196523 CATTAACATATTCCATGGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lman2 ENSRNOG00000016161 ENSRNOT00000021638 2 1 1 98 17 9811664 9811684 GAAGAACTGCATCGATGTCAC 60 9811744 9814211 ATGAGGTCGTGGTTGTCAG 60 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 1 5 5 80 13 55062935 55064383 GCAGCTTTGAGCAATACCA 59 55062873 55062892 TTGCTTTCTTCACTTGTCCA 58 NA Rattus norvegicus 81 LOC100911597 ENSRNOG00000049236 ENSRNOT00000037611 2 1 1 80 7 119013505 119013524 CTCTGAACGACAACATTGCC 60 119011752 119013463 TTCGATCCACATCCTTCCAC 60 NA Rattus norvegicus 81 Usp43 ENSRNOG00000003785 ENSRNOT00000065383 1 1 1 80 10 54445663 54445683 AAACAGAGCAACACCTTTGAC 60 54444141 54445623 AGTGACACTCAAGAATCTCGT 59 NA Rattus norvegicus 81 Rpf1 ENSRNOG00000015969 ENSRNOT00000021705 3 1 1 80 2 252379289 252380942 CTCTTGGTGATAAGGCTCCA 59 252379228 252379247 GGTCTACTGTGGTCTCATCG 60 NA Rattus norvegicus 81 Sectm1b ENSRNOG00000036673 ENSRNOT00000054932 1 1 1 80 10 110252560 110252578 GGAGTACTGGTGGAAGCTG 60 110251934 110252516 TTGTCAGTGGCTAGACCAG 59 NA Rattus norvegicus 81 Itpa ENSRNOG00000021233 ENSRNOT00000028838 1 1 1 80 3 123218863 123220643 ATGAGCAAACGTATGCAGAG 59 123220686 123220704 CTTGGAGCTTGAACAGAGC 59 NA Rattus norvegicus 81 Gclc ENSRNOG00000006302 ENSRNOT00000033196 2 1 1 80 8 85059199 85059217 AGTTCCTGCACATCTACCA 58 85059261 85078558 CCAACATGTACTCCACCTC 58 NA Rattus norvegicus 81 Avp ENSRNOG00000021229 ENSRNOT00000028833 1 1 1 131 3 123118133 123119320 GAGCTGAGACAGTGTCTCC 60 123118020 123118038 GTAGTTCTCCTCCTGGCAG 59 NA Rattus norvegicus 81 Gtf3c6 ENSRNOG00000000586 ENSRNOT00000000716 3 1 1 97 20 45353036 45353158 GAATATGAAGATACTCTTGGGACC 59 45350428 45350447 CATTTGTACTTCAGCACCGT 59 NA Rattus norvegicus 81 LOC100363184 ENSRNOG00000042531 ENSRNOT00000002135 1 1 1 60 11 28693148 28693168 GCCCTATAGAACCTGTCAGTC 60 28693190 28693208 GAATCCAGATCCAGTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr880 ENSRNOG00000042424 ENSRNOT00000067319 3 1 1 60 7 3751508 3751532 CATACTGACACTCATCATTACTCTG 59 3751472 3751495 CTTGATGATGTATGTGTAGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lbx2 ENSRNOG00000008466 ENSRNOT00000011189 2 1 1 167 4 114784621 114784639 ACTTTCCAGGGCCATTCTC 60 114785838 114785858 GTACTTCTGGAAGACGAATCG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646,ENSRNOT00000082042 1 2 2 130 17 10061643 10061661 TTACAAGAGCTCCGAGGAG 59 10052740 10061549 TCATGTGCTCCACTTCCTC 59 NA Rattus norvegicus 81 Psmc2 ENSRNOG00000012026 ENSRNOT00000016450 1 1 1 80 4 9867545 9867659 CTTACCTGACTTAGAGGGTCG 59 9867485 9867506 TCAAATCGGATGTCTCTTTCCA 60 NA Rattus norvegicus 81 Hpdl ENSRNOG00000018143 ENSRNOT00000024393 3 1 1 60 5 135676373 135676392 AGATGCTTCTGAAGGAATGG 58 135676332 135676352 ATAAGCTTCAGGAGGAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vamp2 ENSRNOG00000006989 ENSRNOT00000057295 2 1 1 60 10 55676198 55676219 TCTTACCAGTAACAGGAGACTG 59 55676240 55676765 GATGTCCACCACCTCATCC 60 NA DesignRelaxed Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000085799,ENSRNOT00000088198 3 3 3 80 10 70583070 70584197 TAACAAGAATAGCTTCGGTGTC 59 70584237 70584256 ACATCAATGCTCTGGTTTGG 59 NA Rattus norvegicus 81 Uqcrc1 ENSRNOG00000032134 ENSRNOT00000042114 2 1 1 81 8 117683611 117684811 CTTTCAAGGGAACAAAGAACC 58 117684853 117684872 CTGTAGGCATTAAGATGGGC 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571,ENSRNOT00000012681 2 2 2 80 5 134475588 134475607 TCTCCTTGATGACACTGGAC 59 134475160 134475548 ACCTGGAATTTACATCCAACTG 59 NA Rattus norvegicus 81 Htra2 ENSRNOG00000022448 ENSRNOT00000037333 1 1 1 80 4 113885443 113885723 TGCAGCTATTGACTTTGGA 57 113885166 113885184 ACCTTCATGGTGTTCACTC 57 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000085811 1 1 2 80 1 264509112 264537890 TCTCATCCATCAACAGTTCCC 60 264537931 264537950 GATGGAGTAGGATCCCACTG 59 NA InUTR Rattus norvegicus 81 Cltb ENSRNOG00000017506 ENSRNOT00000023651 2 1 1 82 17 10551568 10554566 ATACCATTGGCTATGTGGCA 60 10554611 10554629 CACCTTCTCCCACTCTGTG 60 NA Rattus norvegicus 81 RGD1563668 ENSRNOG00000038478 ENSRNOT00000058640 3 1 1 60 10 40994542 40994560 TTCTGTTCTGAGTACCGCC 59 40994500 40994520 CATCACCAATGGATAAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdap2 ENSRNOG00000019754 ENSRNOT00000026953 1 1 1 80 2 202489604 202493901 CACATCGCTCTTCGTACTG 59 202493942 202493963 TTCTGAGATAGCAAATACCACC 58 NA Rattus norvegicus 81 AABR07065651.1 ENSRNOG00000046572 ENSRNOT00000071492 3 1 1 135 6 138772551 138772569 TCTCAAATCCCGACTGAGC 60 138772063 138772452 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Ppfia2 ENSRNOG00000004353 ENSRNOT00000005862 3 1 1 80 7 49041149 49041169 AACATTACCAGCTGGATTCAG 58 49041208 49042412 AGTCTTGATGAAGCAACATCTG 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 3 3 3 84 4 162086148 162086166 ACTGGACATTCAGCCAGAC 60 162086211 162086802 TTTAGGAAATTCAGCTCCTCCT 59 NA Rattus norvegicus 81 Olr1538 ENSRNOG00000039704 ENSRNOT00000050197 2 1 1 60 11 43281534 43281552 CCCTGTTCCTACTGTTCCT 58 43281575 43281594 ATCAGTCCGAGATTTCCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep19 ENSRNOG00000024924 ENSRNOT00000037795 3 1 1 100 11 71922829 71933116 GTTCTCAGATTGCACCAGAG 59 71922748 71922766 CAAACAGCTTCTCCAGCTG 59 NA Rattus norvegicus 81 Cd163l1 ENSRNOG00000018978 ENSRNOT00000049269 3 1 1 80 1 212704703 212704722 ACTGCCACAGATAGGTTCAC 60 212704764 212704856 AATACGCTGTCCTCTAAGCA 59 NA Rattus norvegicus 81 Atp6v1e1 ENSRNOG00000011905 ENSRNOT00000016495 1 1 1 89 4 153354328 153357164 GAGGACATAGCTGGTGGAG 59 153354257 153354275 GGCTATTAGGTCCAGTCGG 59 NA Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 1 2 2 80 10 13163199 13166144 CCTTTCGAGCAGATGACAC 59 13163137 13163156 GCTTCATCACATCTGGAAGC 59 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 2 3 3 99 6 136151628 136153817 TCTGTGGTCTGTGAATCAGG 60 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 1 1 1 66 1 16987937 16989114 GAGACTTTAACCAAGCAAGTG 58 16987891 16987911 CAGTTTCTTTCTTCAGAGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Mir3546 ENSRNOG00000035583 ENSRNOT00000053706 1 1 1 60 15 33613442 33613460 AGACGATAGCTCCTCTGAC 58 33613478 33613502 TATACCTGACTCTCACGTATAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb41 ENSRNOG00000011137 ENSRNOT00000015596 3 1 1 80 13 56532529 56533879 AAATACATTCAGGTGAGAAGGC 59 56533919 56533938 AATGGACAGTGAGGTGATCC 60 NA Rattus norvegicus 81 Cenpu ENSRNOG00000022261 ENSRNOT00000041596 1 1 1 80 16 48916351 48916370 ATGATGAGCTCTACAAGCAC 58 48914016 48916309 AAGGGTTCAAGTTTCTGCTC 58 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 1 2 2 80 10 88505106 88505127 AGAAGACTGTACAAATGCAGTG 59 88500562 88505066 GTGTCCATGTAACACTGAGC 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619,ENSRNOT00000021152 1 2 2 80 9 79523313 79523331 GAGGCAGATGATGACAGGA 59 79494500 79523269 TCTTTGCCACTCCTCTGAG 59 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 3 2 2 90 8 49096433 49096724 GACATGATCTGTGCCATCC 58 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 LOC500077 ENSRNOG00000026958 ENSRNOT00000029818 2 1 1 127 4 62394796 62395736 CTGAACAGGCATTCAAGATCG 60 62394689 62394709 TAGGGTTTCCATTGCTATGGT 59 NA InUTR Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 3 2 2 80 5 168026919 168026940 TTCATCATTCTCTGGTTCTCTG 58 168026981 168035550 CGCCTTCTTAAATGGTTGC 58 NA Rattus norvegicus 81 LOC100360120 ENSRNOG00000047309 ENSRNOT00000075273 1 1 1 134 4 167219794 167219812 TACGGTGTCTTCTGCAAGG 60 167219909 167221998 TATGAATCTCTGCAAGCGGA 59 NA Rattus norvegicus 81 Cct6a ENSRNOG00000000923 ENSRNOT00000001227 3 1 1 80 12 30494927 30495203 TGAGTATACATTGGGTGAGGA 58 30494867 30494888 CCTTTAACCAGTAAAGTGACAG 57 NA Rattus norvegicus 81 Car4 ENSRNOG00000002916 ENSRNOT00000003908 2 1 1 80 10 72279546 72279564 GGAAACGAGGTAAACGAGG 58 72279606 72279736 CACTGTGGAGTTTGTAAAGGG 59 NA Rattus norvegicus 81 Cep83 ENSRNOG00000007859 ENSRNOT00000034639 3 1 1 80 7 35780287 35782818 GACTCTTGATGAAGAAGTGGA 58 35782858 35782878 AACTCTGACTTGAGGAATGTG 58 NA Rattus norvegicus 81 Elovl2 ENSRNOG00000014702 ENSRNOT00000019756 2 1 1 80 17 21414649 21414668 TCATGTCTATCACCATGCGT 59 21414711 21417091 CCGAAGAAGCTTTGACCAC 59 NA Rattus norvegicus 81 Zfp788 ENSRNOG00000014380 ENSRNOT00000019278 1 1 1 80 1 98228623 98229167 GAAGTCAGAGAATGTGTACATGTG 60 98229201 98229224 GTGTCTTGGTAAAGATTTCTCCAG 60 NA Rattus norvegicus 81 Cldn5 ENSRNOG00000045811 ENSRNOT00000071806 1 1 1 60 11 86356971 86356991 TTTCCAGTCAAGTACTCAGCA 59 86356931 86356949 TCTTCTTGTCGTAATCGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044412.1 ENSRNOG00000061483 ENSRNOT00000082437 3 1 1 101 20 4957417 4957437 ACTTCTTTAACCGCGACCT 59 4957332 4957351 GTTCTTCCACTTTGTCACCC 59 NA Rattus norvegicus 81 Agbl3 ENSRNOG00000010397 ENSRNOT00000032077 2 1 1 80 4 62357115 62357133 GTGGCATCCTTGAAATGTC 57 62357176 62364839 GTGATTTGACTCTGTTGGTG 57 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911 3 1 3 86 X 71166678 71166696 GAAGCTGTGCTTATCCCTG 58 71166420 71166628 AATTCGAGGCATTCGTTCC 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 2 3 3 93 7 120659562 120659580 CAAGCGTCAGAAGTACGAG 58 120659005 120659507 GTAAGTTGAGAACTCAGAGGG 58 NA Rattus norvegicus 81 Lama1 ENSRNOG00000017237 ENSRNOT00000023226 3 1 1 80 9 115972041 115972815 AATGGCGCTGTATAGATTGGA 60 115972857 115972875 ACATCAGCAGCAACTACCA 59 NA Rattus norvegicus 81 LOC102547932 ENSRNOG00000009302 ENSRNOT00000012321 2 1 1 60 7 116981293 116981312 ACGAGTGTAATGAATGTGGG 58 116981330 116981353 TTCTGGTGTCGTATAAGGTATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000013073 2 2 3 80 4 61774333 61775591 ATTGTCAGCAAGTTGTGGC 59 61775635 61775653 CTTGAGATCCGTGAGGGTC 60 NA Rattus norvegicus 81 LOC100910416 ENSRNOG00000049183 ENSRNOT00000074056 3 1 1 60 2 46204384 46204404 TGTGGTCTTTGTTCTAGTTGG 58 46204426 46204444 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 1 1 2 60 2 95078045 95173486 ATGGCGAGAAGTACCAGAG 59 95173509 95173528 GTCAGTTCAAGATCCAGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Morn3 ENSRNOG00000045574 ENSRNOT00000074936 1 1 1 81 12 38975019 38975333 TTCCTAAGGTGGAGATTCTAGAC 59 38975374 38975392 TCCTCTTCTTCCTCAGGCT 60 NA Rattus norvegicus 81 Atg10 ENSRNOG00000016342 ENSRNOT00000021941 2 1 1 80 2 20076806 20076826 AAGAAAGAGACTCCAACACCA 59 19984642 20076765 TAGCTCCAAGTTCTCCTCTG 59 NA Rattus norvegicus 81 Gfra3 ENSRNOG00000020309 ENSRNOT00000027544 2 1 1 84 18 27493702 27493720 CCACCCTATGGACATCCTC 59 27493504 27493654 CATGGCAGTCCCAATTAGC 59 NA Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 1 1 1 60 10 14021314 14021914 CTAGAGCCTTCGGTGAGAC 59 14021272 14021290 GCAAAGATGATTTGCTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 3 2 2 82 5 150467972 150470107 AAACAACCAGGTATTGACCA 57 150470152 150470170 CCACATCTTCATCCAGCTG 58 NA Rattus norvegicus 81 Snai2 ENSRNOG00000047699 ENSRNOT00000073049 3 1 1 81 11 90406694 90406715 CTCGTCAAGAAACATTTCAACG 59 90405966 90406656 GGTATGGAGAAATGATCACTGTG 59 NA Rattus norvegicus 81 Rgs18 ENSRNOG00000003959 ENSRNOT00000005324 1 1 1 81 13 61589779 61589798 AGTCTCCTCTGAAGAAGCAC 59 61567710 61589739 GGTAAATGCATCTACTCCATCTC 59 NA Rattus norvegicus 81 LOC100910721 ENSRNOG00000057877 ENSRNOT00000073744 1 1 1 60 19 9024807 9024825 CCACAAGAAGATCCTGGAG 57 9024849 9024867 TTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553962 ENSRNOG00000046480 ENSRNOT00000074435 3 1 1 85 1 198831328 198831346 AGGAAGAGACCGAACTGTG 59 198830757 198831280 TTGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 AABR07002659.1 ENSRNOG00000034000 ENSRNOT00000024155 3 1 1 80 1 79290655 79291981 TGTGTACAGTAACATTGAGGAC 58 79292115 79292136 ATCAAAGCTAATGAGCATCCTC 59 NA Rattus norvegicus 81 G6b ENSRNOG00000026936 ENSRNOT00000037191 2 1 1 143 20 5055999 5056017 CTAGAGCTGCTACTGAGCG 60 5055721 5055892 GGAATACTCGGATCCGTGG 60 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000076170 1 1 2 60 1 85491022 85491040 CTCCAAGAAGTCCCTTGTC 58 85491064 85491082 GACAGGCACATTCAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 2 2 2 80 4 165622664 165625303 GTTTGTACACCAGACTGCC 59 165622602 165622623 AACTCTACAGTTTCTCCATCCC 60 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053,ENSRNOT00000091209 3 3 3 88 19 62150207 62150228 CCAATACCATCAACTATGACGA 58 62146876 62150160 GAAGAAACAACCATCTTCAGG 57 NA Rattus norvegicus 81 Lum ENSRNOG00000004610 ENSRNOT00000006109 1 1 1 86 7 38820074 38822444 AGAGTAAGGGCACAGAGGA 60 38822494 38822512 ATTGGCCACTGACACTACC 60 NA InUTR Rattus norvegicus 81 Fcgbpl1 ENSRNOG00000042899 ENSRNOT00000057120 3 1 1 80 1 85091178 85094253 CAATATGTGCCGGTGAACTC 59 85094296 85094314 CGTCAGACCATTGTTTGGG 59 NA Rattus norvegicus 81 Auh ENSRNOG00000011684 ENSRNOT00000015786 1 1 1 80 17 12341798 12341816 GAGCCAAGATGCATTCCAG 59 12341860 12351046 CAGGAAGGTTAGCGATGTC 58 NA Rattus norvegicus 81 Atg9a ENSRNOG00000018975 ENSRNOT00000025740 2 1 1 80 9 82389617 82391040 TTGAACTCATGCAGTTCCTC 58 82389556 82389577 TGGCAAATAGGATGTCATAGTC 58 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971,ENSRNOT00000040204 2 2 2 80 9 15639808 15640523 GGCCTTTCTATTAAAGTACACG 57 15639749 15639768 CTTCTTGAAGATGTGCACTG 57 NA Rattus norvegicus 81 Myct1 ENSRNOG00000018858 ENSRNOT00000025616 2 1 1 60 1 42121702 42121722 TAACACCACGAGTTTAGGGAG 60 42121742 42130762 GGACATTATAAGGTCCTCCCA 59 NA DesignRelaxed Rattus norvegicus 81 Brd1 ENSRNOG00000004538 ENSRNOT00000006034 1 1 1 80 7 129703103 129703121 GAGCAGCTACAGGAGAAGG 60 129702606 129703064 GTGATCCAAATAATCTGGTACCTC 59 NA Rattus norvegicus 81 Ptgfrn ENSRNOG00000015655 ENSRNOT00000021162 2 1 1 80 2 203464467 203464487 TACAAGTGTTCAACTCCAAGC 59 203461736 203464426 ATCTGCCAGCACTTTAACCT 60 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 2 2 2 80 5 134656580 134663843 CCACATTTCTGAACGTTGC 58 134663886 134663905 AGATCTCCTTCCGATCAGTG 59 NA Rattus norvegicus 81 Col6a6 ENSRNOG00000023007 ENSRNOT00000056414 3 1 1 80 8 114363079 114363098 TTCATAAACCTGACCACGGA 59 114360107 114363039 GATACTTGTTTATCCCATGCCT 58 NA Rattus norvegicus 81 AABR07066782.1 ENSRNOG00000050818 ENSRNOT00000073333 1 1 1 92 9 16094772 16094983 GATTTCGAAGTCAGGAAAGCC 60 16094700 16094718 CTCATTCCCAGGTGAGTGG 60 NA Rattus norvegicus 81 Vwa1 ENSRNOG00000018338 ENSRNOT00000024897 2 1 1 80 5 173220149 173220168 GAAGCACCTACACTTTGTGG 59 173218465 173220107 TGCATCGCATCAATAATGGC 60 NA Rattus norvegicus 81 Rbm34 ENSRNOG00000020004 ENSRNOT00000027145 1 1 1 80 19 59877766 59877784 TGAGGATCGTGAGAAACCC 59 59876581 59877725 GATGAACAGCATCTGTGTTCTC 60 NA Rattus norvegicus 81 Mb ENSRNOG00000004583 ENSRNOT00000006184 2 1 1 80 7 118108793 118108811 GATGGTGCTGAACATCTGG 59 118103899 118108753 GCCTTAAATAGACTGATGAGGAC 59 NA Rattus norvegicus 81 Magohb ENSRNOG00000010316 ENSRNOT00000064420 2 1 1 80 4 165518282 165518303 GACAGTGAAATTACAAAGGAGG 57 165515887 165518244 GATTACGATTTCAAGTTCCTGC 58 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 2 1 2 80 7 117000764 117001093 GAATGAACTGGGATGCTGTG 59 117001136 117001154 CATTTGTCAACCCATGGCT 59 NA Rattus norvegicus 81 Cd79al ENSRNOG00000049925 ENSRNOT00000071609 1 1 1 87 9 16795858 16795876 TCTAGGAGTCCTCCGAACC 60 16794201 16794219 TTCTAACATCAGGGCCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415,ENSRNOT00000079719,ENSRNOT00000082985 1 3 3 80 6 51282911 51291108 TGGATCCAGAACAGATGTCTC 59 51282851 51282871 CTTGATCGATTACGTGTTCCC 59 NA Rattus norvegicus 81 Gbp5 ENSRNOG00000032240 ENSRNOT00000037339 3 1 1 80 2 248194092 248194112 AGGCAAATAGAGTTTGAGAGG 58 248194154 248196003 TTCCATCTCTTCCTGGACC 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 1 3 7 92 20 4095964 4095982 GAAGATGAGTGGAGTCGGG 60 4096038 4096452 CCAGACTGTCCTTTCTGGT 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000086298,ENSRNOT00000060327 3 3 7 60 20 4096768 4096786 CCTGAACTGAGGTGAGGTG 60 4096810 4096828 AAGACATGGTGACAGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atxn7l3b ENSRNOG00000059744 ENSRNOT00000088732 3 1 1 60 7 55604106 55604124 GATTTCGTTGGCCAACCTG 60 55604064 55604082 TACATAGATCTCCTGGGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc151 ENSRNOG00000013263 ENSRNOT00000017820 1 1 1 80 8 23001279 23001451 CAAGGACAAGTTCTTTGACGA 59 23001219 23001237 GAACGGATCTTGAAGGCAG 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070,ENSRNOT00000037097 2 2 2 85 5 152621219 152626005 CTGATGACCTTGAAGGGCA 60 152626053 152626072 AAAGCAAGAATAGCCGTAGC 59 NA Rattus norvegicus 81 Eif4a1 ENSRNOG00000030628 ENSRNOT00000049048 3 1 1 80 10 56275233 56275412 CGTCATCGAGAGTAACTGGA 59 56275172 56275190 TAAATACCACGGAGGAGGG 58 NA Rattus norvegicus 81 Egln2 ENSRNOG00000020947 ENSRNOT00000028434 2 1 1 89 1 83971096 83971115 GTGAGGCATGTTGACAATCC 60 83970667 83971044 GCCATGCACCTTAACATCC 59 NA Rattus norvegicus 81 Ccdc105 ENSRNOG00000007375 ENSRNOT00000009833 3 1 1 80 7 13918354 13918374 CTTGGTTCGCATGTATCAGAG 59 13918415 13919057 GTTAGCAGGTCAGTACCCTG 60 NA Rattus norvegicus 81 Ddx52 ENSRNOG00000002612 ENSRNOT00000003600 2 1 1 80 10 71263036 71263057 GAAACAACCCACAAATAAAGGC 59 71263096 71264032 AATTCTCTGTGAATCTGGCTG 58 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815,ENSRNOT00000028786 3 2 2 80 9 16765679 16766150 TGACTCTGAGGTTGTCCAG 59 16766193 16766212 CAAAGCACTACCGCATAGTC 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884,ENSRNOT00000083693 1 2 2 80 13 57315371 57343832 CGATAGAACATCATCTGATCACC 59 57343870 57343890 ACATACAGAGGACAATTTGGG 58 NA Rattus norvegicus 81 LOC100911398 ENSRNOG00000047820 ENSRNOT00000071262 2 1 1 60 10 44861495 44861514 TTGTGCTGATACCCTTCCTG 60 44861535 44861555 TATACAACAACCAACACCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nus1 ENSRNOG00000000411 ENSRNOT00000000467 2 1 1 80 20 33578014 33578033 TGTTGAAGTTTGGTCCTGTG 59 33578074 33581259 AAGGCAAAGAGATGATCTCAG 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 2 2 2 80 6 108657268 108657286 ATTACTGTGAAGCTCGGTG 58 108652567 108657225 GGAAGGAACTACCATTCCAG 58 NA Rattus norvegicus 81 Acss1 ENSRNOG00000007102 ENSRNOT00000009627 2 1 1 80 3 146423572 146427252 GACATCAAAGGAGAAGCTGC 59 146423511 146423529 GAGCTCATTTACCACCACG 59 NA Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 3 2 2 131 17 10758835 10758853 ATGCACAGAAGAAGGAGGA 58 10758177 10758741 TCAGCCCATACTTATCTCGA 58 NA Rattus norvegicus 81 Olr812 ENSRNOG00000005407 ENSRNOT00000007163 2 1 1 60 4 72481072 72481091 GTGAAATCCTGTCTGTCCTC 58 72481113 72481132 ATGACAATTTGGTTGAGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap8-1 ENSRNOG00000043471 ENSRNOT00000064583 3 1 1 60 11 29618779 29618797 TACCCACTGGGTTACAGTG 59 29618737 29618757 CATAGCCAACTGGAGAGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfbr2 ENSRNOG00000013265 ENSRNOT00000037883 1 1 1 80 8 124327932 124327950 AGCAGACGGATGTCTACTC 59 124315576 124327890 AATCTTTCACTTCTCCCACAG 58 NA Rattus norvegicus 81 Slc25a48 ENSRNOG00000012040 ENSRNOT00000016138 2 1 1 81 17 8596526 8603487 TGGACACAGTCAAGACTCG 59 8596463 8596481 TCCCTCTTGTACACCATGC 59 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 3 1 2 91 16 3759679 3761997 CTCTGAGTCTCAAATAATGACTTGG 60 3759612 3759631 GCTCTTGGCTTTCTTCAGAG 59 NA Rattus norvegicus 81 LOC100910051 ENSRNOG00000047332 ENSRNOT00000071649 1 1 1 60 2 115207626 115207645 CTATGATCGCTATGTTGCCA 58 115207665 115207686 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bmper ENSRNOG00000015357 ENSRNOT00000033460 3 1 1 80 8 24511534 24511555 GCAGTGATGTTTATGACAATGG 58 24511594 24513453 AAACCATTGTAGAGTCCTTGC 59 NA Rattus norvegicus 81 Palld ENSRNOG00000010107 ENSRNOT00000059673 2 1 1 80 16 31918149 31918167 GCTGTCATTCAAGACCTGG 59 31918211 31921136 CTCATAGGTTAGCCTCGGT 58 NA Rattus norvegicus 81 Bzw2 ENSRNOG00000005096 ENSRNOT00000007414 2 1 1 80 6 55616295 55616313 CCAAGATGACCAACCACTG 59 55612340 55616252 GTTTGTTGAAGACCTGAGCA 59 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 2 1 1 60 10 54246613 54250714 GTGTTGGAGATCGTCATGG 58 54250738 54250756 GGAGGTTCTTCACATCCTC 57 NA DesignNoJunction Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 2 2 2 80 7 120602153 120602172 TGTGCTATGAGTACCTTGGG 59 120601961 120602112 CATACATACAGCTGGACTCGA 60 NA Rattus norvegicus 81 Pyy ENSRNOG00000020877 ENSRNOT00000028323 1 1 1 163 10 90048644 90049056 AGCTGTAGCTGCTATGGTG 60 90048499 90048517 AAGCATAGTAGCGGCTCAG 60 NA InUTR Rattus norvegicus 81 Prpf31 ENSRNOG00000061039 ENSRNOT00000091739 2 1 1 80 1 64153471 64153490 GATGAAAGAACGGCTAGGAC 59 64152895 64153429 TAGGCATCCTCCTCAATCTC 58 NA Rattus norvegicus 81 Tbca ENSRNOG00000016100 ENSRNOT00000021543 1 1 1 60 7 144503601 144503620 AAGCAAAGCAGCAAGAAGAG 60 144503640 144503661 GCATAGTTCTCACCATCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrtm2 ENSRNOG00000007508 ENSRNOT00000010238 1 1 1 80 4 151381694 151384232 GACAGCTCTCCTGGATCAC 60 151381632 151381651 CACATGTGCAAGAGAAAGGG 60 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564,ENSRNOT00000078969 1 2 2 80 18 27640188 27640301 TTGAGGACTTAGGAGATGAGC 59 27640343 27640361 CTTCTGAGGTCTCTGTCCG 59 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564,ENSRNOT00000078969 3 2 2 80 18 27640189 27640301 TGAGGACTTAGGAGATGAGC 58 27640344 27640362 TCTTCTGAGGTCTCTGTCC 58 NA Rattus norvegicus 81 Neil3 ENSRNOG00000011688 ENSRNOT00000015623 2 1 1 80 16 41102756 41102775 ATGTGTTTACAGTGGTGTGG 59 41102817 41116964 CCGAAATGAATCCGTAAAGC 58 NA Rattus norvegicus 81 Prpmp5 ENSRNOG00000010485 ENSRNOT00000013943 1 1 1 80 4 166016267 166016285 CTAGTCCTGAGCTCAGCTC 59 166014352 166015214 CTGCTGCTCTAACTCTAACTG 58 NA Rattus norvegicus 81 Ifnk ENSRNOG00000022990 ENSRNOT00000034527 1 1 1 86 5 50631725 50631743 GGAAGATTGTCGTGGTGGA 60 50631791 50633851 GCTTGAAGCTGGATGATTCTC 60 NA InUTR Rattus norvegicus 81 Shc2 ENSRNOG00000008030 ENSRNOT00000010714 2 1 1 96 7 12958511 12958529 TAACTTGTCAGTTCCCGCT 59 12961324 12961465 GTAATCGGTCATGTCCGTG 58 NA Rattus norvegicus 81 Mars2 ENSRNOG00000050002 ENSRNOT00000075508 1 1 1 60 9 64436280 64436302 CTTTCAGATCTATAAGGCTCTGG 58 64436322 64436340 GAAGCCATTAGTTTGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 3 2 2 80 X 15451983 15452107 AGTAATGCAGATGCTGAGG 57 15452149 15452169 GTGACTACGATCTGACTTCTC 58 NA Rattus norvegicus 81 Phf20l1 ENSRNOG00000046527 ENSRNOT00000007564 1 1 1 80 7 108744745 108744763 CCACTAAGCTGGTGTTGTC 59 108744805 108749044 GACTAAAGCAATCCAGTCCTC 59 NA Rattus norvegicus 81 RGD1562399 ENSRNOG00000032289 ENSRNOT00000058491 2 1 1 60 9 66046690 66046710 CAAGACCTACAACTACCTGAC 58 66046731 66046750 AGGAGACTTGGTGAACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000027344 3 1 2 81 1 215536575 215536595 CCATCTTCAACTTCGTCTACC 59 215522199 215536533 TTCTTGTCCCGAACTTTGAG 58 NA Rattus norvegicus 81 AABR07057196.1 ENSRNOG00000005546 ENSRNOT00000007332 1 1 1 80 7 60070431 60070451 GCTCATGTTTGAGGAGTTACG 59 60070493 60070513 ACATTGCCAATCTGCATGG 59 NA Rattus norvegicus 81 Ctnnbl1 ENSRNOG00000012021 ENSRNOT00000066808 2 1 1 80 3 154318442 154318463 TTTCCACTCTTCATGAAGTCTC 58 154318504 154351338 CGAACAGACATGCTCTTCG 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601,ENSRNOT00000071846 3 2 2 80 8 23383118 23383138 CAAAGAGGGAGCTAACAAGGA 60 23380331 23383079 TTAATTCCTCTTCCTCCTGGTG 60 NA Rattus norvegicus 81 Hid1 ENSRNOG00000003464 ENSRNOT00000004718 3 1 1 81 10 103907018 103907836 TCGTGAAGAGGACTTCCAG 59 103906955 103906973 GTTGGGAAGGTAGGTCTGG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000047281 ENSRNOT00000064924 1 1 1 80 X 15400470 15400490 ACCCAGTACATGAATGAAGGA 59 15400530 15400703 TGAATATGAGTTCGGATGCAG 58 NA Rattus norvegicus 81 Tesb ENSRNOG00000039398 ENSRNOT00000079194 3 1 1 80 20 4220380 4221465 GGAAATGTGTTATCCACAGCC 60 4221698 4221717 AAGCAGAACTCACAGCTAGG 60 NA Rattus norvegicus 81 Tspan13 ENSRNOG00000005046 ENSRNOT00000006752 3 1 1 82 6 55506801 55524204 CCTGCTATACACCCTGGTC 59 55506737 55506755 CTCGGAGACTGGAGATCAG 59 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000045539 ENSRNOT00000057475 1 1 1 80 4 117620583 117620817 GTCGTGTCAGAAAGAACCAG 59 117620522 117620543 GGACTTGTTCTGTAAGATGTGC 60 NA Rattus norvegicus 81 Lcorl ENSRNOG00000003787 ENSRNOT00000072746 1 1 1 88 14 69818194 69819140 CAGTCAGTGATTGTATGCCA 58 69819191 69819209 CTTATCAGTGTGGGACTGG 57 NA Rattus norvegicus 81 Tomm20 ENSRNOG00000019980 ENSRNOT00000027088 2 1 1 80 19 59865198 59865217 TACAACAGACTCTTCCACCA 58 59863882 59865157 GAGCACTGACAATTCTCTGAC 59 NA Rattus norvegicus 81 Mtx3 ENSRNOG00000023837 ENSRNOT00000061761 1 1 1 80 2 22430052 22430073 CTGAATAGGATTCTCTTGACGA 58 22430113 22430229 GGCATCTCTGTATATCTGGG 57 NA Rattus norvegicus 81 Agmo ENSRNOG00000023116 ENSRNOT00000032108 2 1 1 80 6 57024433 57047688 CAAATACAGCGGTATTATCTCAGG 60 57047725 57047745 GGAAACCAATGGATGTCAAGG 60 NA Rattus norvegicus 81 Slc35b4 ENSRNOG00000008851 ENSRNOT00000012179 1 1 1 80 4 61556963 61558166 GGTTACTAGGTATTGGAGCAC 58 61556903 61556922 GTCTGTACAGAGTCTCTTGG 57 NA Rattus norvegicus 81 Dgcr6 ENSRNOG00000001880 ENSRNOT00000002574 1 1 1 84 11 87080937 87080955 CTTCTGGAGATCCAGCACC 60 87078099 87080889 TCTGTCTGAGCACTCTGTG 59 NA Rattus norvegicus 81 Zfp647 ENSRNOG00000050651 ENSRNOT00000075636 2 1 1 81 7 118515000 118517483 GAAGTGATCACTCAGAATGCA 59 118514939 118514958 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Upk2 ENSRNOG00000043324 ENSRNOT00000016303 2 1 1 82 8 48773663 48773681 TCCTACCGAGTACAGAAGG 58 48773234 48773617 GACTCCATGTTTCTTCGGG 58 NA Rattus norvegicus 81 Cdkn2c ENSRNOG00000008956 ENSRNOT00000012088 3 1 1 87 5 129351827 129351848 GAGCAACTTACTAGTTTGTTGC 58 129348490 129351780 CAAGTTTCATAACCTGCAGC 58 NA Rattus norvegicus 81 Cbr3 ENSRNOG00000001701 ENSRNOT00000002310 2 1 1 80 11 33911538 33917018 ACCACATGGTAGAGTGGTG 59 33917060 33917080 CTTTCCTGAAGATCTTCGCTG 59 NA Rattus norvegicus 81 Nprl2 ENSRNOG00000021660 ENSRNOT00000051522 3 1 1 80 8 116300338 116300573 CAACATGTTGATGAAAGGAAGC 59 116300610 116300632 TCGGACTGGATATTTCTGTAGTC 60 NA Rattus norvegicus 81 Igf2bp2 ENSRNOG00000025946 ENSRNOT00000036958 3 1 1 80 11 82545120 82545719 CAAGATAACTATCTCATCCTTGCAG 60 82545755 82545775 GCTTCAATGGTACCTTTCACC 60 NA Rattus norvegicus 81 Gucy2c ENSRNOG00000009031 ENSRNOT00000012212 2 1 1 80 4 170732986 170733006 GGTCTGATCCATAAGTCAGGT 59 170728561 170732947 ACGATCTCTTGTAATTTCCCTG 58 NA Rattus norvegicus 81 Pex19 ENSRNOG00000022572 ENSRNOT00000032563 3 1 1 82 18 71607622 71608344 TTATGCAGCAGTTACAGGAC 58 71607397 71607415 ATCCAGGTCAAAGTTGAGG 57 NA Rattus norvegicus 81 Txnl4b ENSRNOG00000021379 ENSRNOT00000034676 3 1 1 157 19 42103247 42104657 GAAAGTGGATTATGGGTCGC 59 42103109 42103130 CGTATTTGGGTATGTTCTTGGG 60 NA Rattus norvegicus 81 Agt ENSRNOG00000018445 ENSRNOT00000024917 2 1 1 80 19 57327142 57327161 GATGAACTTGCCACTAGAGG 58 57324472 57327100 CTCATCTTCCCTTGGAAGTG 58 NA Rattus norvegicus 81 Orai1 ENSRNOG00000001336 ENSRNOT00000001806 2 1 1 180 12 38995299 38995323 GGACTGGACAGAGTTACTCC 59 38982631 38982650 TAGTCATGATCCGTGTCCAG 59 NA Rattus norvegicus 81 Thap7 ENSRNOG00000037967 ENSRNOT00000057751 1 1 1 101 11 87400554 87401710 GGAATCAGTGGGTATCACAG 58 87400472 87400490 ATAACCATGCACCTTGGTC 58 NA Rattus norvegicus 81 LOC102549198 ENSRNOG00000046839 ENSRNOT00000074629 1 1 1 60 18 55467255 55467273 CTCCCTTCACTGACTTTCC 58 55467295 55467315 ACTTCAGGCATTTCTTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564053 ENSRNOG00000005375 ENSRNOT00000066254 2 1 1 80 5 7327587 7335026 GAAAGCGAATCATCAGAACCC 60 7327527 7327547 CTTCTTTGCATTCATCTGCCA 60 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000018487,ENSRNOT00000086385 2 2 2 80 1 218515874 218516138 AGGACACCTTCTGAAGGAC 59 218515812 218515830 CCAGCTGTGTCTATGAGCA 60 NA Rattus norvegicus 81 Pds5a ENSRNOG00000002541 ENSRNOT00000003437 1 1 1 80 14 44256586 44256605 CAACAGGTGAGAAGAATGGA 58 44256647 44258100 TAATTGCCTGTACCTTTGCT 58 NA Rattus norvegicus 81 Hdac5 ENSRNOG00000020905 ENSRNOT00000055187 2 1 1 81 10 90141830 90141848 ACAACGTAAATGTGGCGTG 60 90141606 90141785 ACTACTGTCCTGAAGGCTG 59 NA Rattus norvegicus 81 Mir3591 ENSRNOG00000035602 ENSRNOT00000053725 2 1 1 60 18 60755337 60755356 TGTTTAGTGTGATGATGGCG 59 60755296 60755314 CTCTGGAGTGTGACAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipt2 ENSRNOG00000016906 ENSRNOT00000022879 1 1 1 67 1 165171100 165171551 AAGATCTGCGCTATCGGAG 60 165171582 165171600 GAACAATTCAGAGCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000009584 1 1 2 80 5 64789828 64790595 TGGAGTCAAAGGAGGAGTG 59 64790637 64790657 TTCCATAACTGTCCATCACGA 59 NA Rattus norvegicus 81 Pigk ENSRNOG00000042359 ENSRNOT00000014725 3 1 1 80 2 257920024 257920044 ACCGACATGTTGCAAATACTC 59 257920083 257937510 GCATAAGGACAATGTGACTGTC 60 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675,ENSRNOT00000005478 3 2 2 80 10 17262119 17269035 AAGAAATCAGGGAGTGACCC 60 17269075 17269096 CTGCTTCTGATAGTTTGCTACC 59 NA Rattus norvegicus 81 AABR07010170.1 ENSRNOG00000061390 ENSRNOT00000092191 1 1 1 168 2 127777833 127777851 GAAGTCAAGAGCAAAGCCG 60 127770907 127770925 CATGAATGCAGCAGTGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Atxn7l3 ENSRNOG00000020930 ENSRNOT00000028407 2 1 1 80 10 90240096 90240413 AGCAAACTAGAGGCCATCG 60 90240034 90240055 GTGTACTTCAAAGCAGAATCCC 60 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810,ENSRNOT00000039677 2 2 2 80 1 217686535 217686727 GAACAACACTAGGCTGCTG 59 217686473 217686494 TTCACCACTGTCATACGTAGAG 60 NA Rattus norvegicus 81 Smim14 ENSRNOG00000002553 ENSRNOT00000003552 2 1 1 102 14 44440364 44447034 TATCAATCTGCTCCGGCAG 60 44454078 44454097 GATCACAGTGATGCTGATGC 60 NA Rattus norvegicus 81 LOC100912253 ENSRNOG00000045569 ENSRNOT00000074667 1 1 1 80 17 15408559 15408577 CGGTTCCTGAGAAAGAGAC 58 15408157 15408517 TCCAGAATAAGTCAGAACCAC 58 NA Rattus norvegicus 81 Sertm1 ENSRNOG00000014046 ENSRNOT00000018780 1 1 1 276 2 144322453 144322471 GGAGCTTTCTTAGCTTCCC 58 144306204 144306222 CTGCAAATCCAGATGAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rnasel ENSRNOG00000027017 ENSRNOT00000032157 3 1 1 80 13 71196124 71197501 AGACTTGGAGGACCTTGGA 60 71197544 71197563 TTCTGACCCTTCAGTGTCTC 59 NA Rattus norvegicus 81 AABR07065699.1 ENSRNOG00000050102 ENSRNOT00000072633 2 1 1 73 6 139560046 139560172 AAAGGTGTCCAGTGTGAGG 60 139560208 139560227 AGTTTCATGGACCTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Mrps26 ENSRNOG00000021224 ENSRNOT00000028828 1 1 1 86 3 123093951 123094495 TCTCAAACTGCAGGAGGAG 59 123094545 123094563 CTCTTCGGAGAGTCCAAGG 59 NA Rattus norvegicus 81 AABR07065834.1 ENSRNOG00000048384 ENSRNOT00000074930 3 1 1 81 6 143130983 143131084 CAGTAACTGCAGGAGTCCA 59 143130920 143130938 AGCTTCACAGAAGTCCCAG 59 NA Rattus norvegicus 81 Galnt13 ENSRNOG00000005335 ENSRNOT00000048804 3 1 1 80 3 40330373 40330393 TAGTGTCATAAATCGCTCACC 58 40330432 40331586 TTGAGGAAATCTCTTTCACTGG 58 NA Rattus norvegicus 81 Recql4 ENSRNOG00000032446 ENSRNOT00000045135 1 1 1 80 7 117768774 117768792 CATTGATGAGGTCCACTGC 59 117768633 117768733 TCCCGAAGTACTTTACAAACAC 59 NA Rattus norvegicus 81 Myf5 ENSRNOG00000004768 ENSRNOT00000006453 1 1 1 80 7 49730776 49731255 CTGATGTATCAAACGCATGTG 58 49730716 49730734 TGATCCGATCCACTATGCT 58 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 3 2 2 80 1 91883215 91883233 ACTCTTTCTCAAGCAACGG 58 91883276 91884983 GAAGCGATGTGCTTAAACAG 58 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 3 2 2 80 11 10086040 10086058 AGAAGAGAAACGGGCTCAG 59 10089879 10091309 GATAAGTTACTGTTGGTGTGAAGG 60 NA Rattus norvegicus 81 Mrpl21 ENSRNOG00000013845 ENSRNOT00000018848 3 1 1 82 1 218534156 218535214 CCACAAGGATATGTTCCTAAGAC 59 218535256 218535274 CTAGTCTCTTCAGCAGGGT 58 NA Rattus norvegicus 81 Cd27 ENSRNOG00000027466 ENSRNOT00000038023 2 1 1 80 4 157749935 157749955 CAAACAACTGTCCAGACAGAC 60 157749722 157749893 TCACAAGGAATGTCCCTGG 59 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491,ENSRNOT00000056724 3 2 2 80 9 97251723 97251746 AGAATACCCTAATGAGGAAGAAGG 60 97245668 97251688 ATGATATCCTCGATAACCTGCTC 60 NA Rattus norvegicus 81 Parp12 ENSRNOG00000008196 ENSRNOT00000011481 3 1 1 80 4 66883559 66888436 AGCTTCCAAGATAAGTGCC 58 66883497 66883515 ATCCTTCCATTCACCTCCA 58 NA Rattus norvegicus 81 AABR07009357.1 ENSRNOG00000050719 ENSRNOT00000071039 3 1 1 83 2 94315857 94315894 CCATCAAAGGACACAGACC 58 94315792 94315811 CACTCACTTCCTGATTCCAG 58 NA Rattus norvegicus 81 Skil ENSRNOG00000009899 ENSRNOT00000013191 2 1 1 80 2 115868152 115868526 AGTTGCAGATGGAAGTGGA 59 115868090 115868111 CTTTCTGTAGATTCTGCTGCTC 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154,ENSRNOT00000056493 3 2 2 92 4 145453895 145453913 CATGGAGGACAAGATTCCC 58 145453633 145453839 CATTGAGGCTATTGCTGGT 58 NA Rattus norvegicus 81 Olr889 ENSRNOG00000033344 ENSRNOT00000047673 2 1 1 60 7 4183097 4183116 AAGTTTGTGCCATCCTTGTC 59 4183056 4183077 GGTATGATAATGATCAGCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc34a2 ENSRNOG00000004626 ENSRNOT00000048509 3 1 1 80 14 60263428 60265731 GAAATGAGTTCAGAAGGGCA 58 60263367 60263385 GAGGTAAGAGCACCAACAC 58 NA Rattus norvegicus 81 Tmem161b ENSRNOG00000032414 ENSRNOT00000050072 2 1 1 80 2 12519828 12529149 GAAGTGGATACTTTAGCACTGC 60 12529189 12529208 ATACACAACAGTAGCAGCCA 60 NA Rattus norvegicus 81 Lrrc41 ENSRNOG00000013642 ENSRNOT00000018506 2 1 1 80 5 134946543 134946654 ACTCAAAGAATACAACCTGTCC 58 134946695 134946713 AAGAGCACCTCACTCTGAC 59 NA Rattus norvegicus 81 Lrrc41 ENSRNOG00000013642 ENSRNOT00000018506 3 1 1 80 5 134946672 134946693 CCATGATATGAATCTTGCAGAC 57 134946731 134947284 GAGAAGGTAATCTCTTGAAGGG 58 NA Rattus norvegicus 81 Zfp2 ENSRNOG00000030750 ENSRNOT00000040346 3 1 1 80 10 36402535 36402554 GAATTCTCTAGGAAGGCCCT 59 36400462 36402492 TCAGTGATTCCTGAGCTCC 59 NA InUTR Rattus norvegicus 81 Ctf1 ENSRNOG00000018962 ENSRNOT00000025646 1 1 1 80 1 199163134 199164412 GGAGGGAAGTCTGGAAGAC 59 199164456 199164474 TGTGTCTGTCGGATCTTGG 59 NA Rattus norvegicus 81 Tfe3 ENSRNOG00000009605 ENSRNOT00000012829 3 1 1 80 X 15583039 15583584 TACTCAAGGTTCAAACCCAC 58 15582978 15582997 AGTACTGTTTCACCTGTTGC 59 NA Rattus norvegicus 81 Myadm ENSRNOG00000053450 ENSRNOT00000081980 3 1 1 136 1 64441131 64444181 GTTAAGGAAGCAGCCATGC 60 64441013 64441032 GTGGATACTAGCTGCAGGAG 60 NA InUTR Rattus norvegicus 81 Hoxc13 ENSRNOG00000028679 ENSRNOT00000033300 3 1 1 81 7 144532479 144532497 CAGTCAGGTGTACTGCTCC 60 144532541 144537726 CTGTAGAGGAACCACGTCTG 60 NA Rattus norvegicus 81 Olr1344 ENSRNOG00000033704 ENSRNOT00000046464 1 1 1 60 9 99667543 99667562 TAGCCATCATCCTCACTGTC 59 99667502 99667522 AGGAAGTAGTACATGGGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir99a ENSRNOG00000035524 ENSRNOT00000053647 1 1 1 60 11 16052159 16052177 GGCATAAACCCGTAGATCC 58 16052200 16052219 CCCATAGAAACGAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 1 2 2 95 7 121297699 121297828 CTTACTCTCCGGAAGTCCT 58 121297622 121297640 ATGTCCGAATTTGGAGGTG 58 NA Rattus norvegicus 81 Cd274 ENSRNOG00000016112 ENSRNOT00000034421 1 1 1 80 1 247526571 247532982 GAAAGTCAACGCTCCATACC 59 247533024 247533043 TGGCACATTAGTTCATGCTC 59 NA Rattus norvegicus 81 Scly ENSRNOG00000020083 ENSRNOT00000027220 2 1 1 80 9 98454960 98454980 GAGAACTGCGAGACTTATGAG 58 98455021 98455488 CTTACCAAATTCAGCCTCCA 58 NA Rattus norvegicus 81 Sod2 ENSRNOG00000019048 ENSRNOT00000025794 3 1 1 80 1 47916816 47916834 CAATAAGGAGCAAGGTCGC 59 47916203 47916772 AGTGGAATAAGGCCTGTGG 59 NA Rattus norvegicus 81 Slc7a11 ENSRNOG00000010210 ENSRNOT00000014317 3 1 1 80 2 139471131 139471149 CAGTCCCGATCTTTGTTGC 59 139470274 139471092 CAACATAGAATAACCTGGAGACAG 59 NA Rattus norvegicus 81 Tub ENSRNOG00000046566 ENSRNOT00000074636 3 1 1 80 1 173623010 173624381 GTGTGCTATGAGACAAATGTCC 60 173624421 173624440 ATGAACCATGTTCATGCCTG 59 NA Rattus norvegicus 81 Lgr5 ENSRNOG00000004221 ENSRNOT00000005814 2 1 1 80 7 58461304 58461324 TTAACTGGAGCAAAGATCTCG 58 58458056 58461265 GTAAGACAAATCTAGCACTTGG 57 NA Rattus norvegicus 81 Nphs2 ENSRNOG00000004030 ENSRNOT00000005425 3 1 1 80 13 73934740 73934759 CTGGACACCTATCACAAGGT 59 73934797 73936299 GAACATATCTTTGGTTACCACCTC 60 NA Rattus norvegicus 81 Ncmap ENSRNOG00000048139 ENSRNOT00000073506 2 1 1 89 5 153729430 153730379 TGTACAACAGGAGAATGAGGA 59 153729361 153729379 CATTGCTGTTTGGGTCCAG 59 NA Rattus norvegicus 81 Ebp ENSRNOG00000004903 ENSRNOT00000007015 2 1 1 81 X 15051837 15051857 GAAGACCAAGCCTTCTTATCC 59 15054206 15054333 CGATGAAGCCATCACTAAGG 59 NA Rattus norvegicus 81 Fam114a1 ENSRNOG00000026504 ENSRNOT00000002883 2 1 1 80 14 44953223 44953242 AGGAAAGGAAGAGAAAGCTG 58 44952101 44953182 ATGTACACCTCCTCTACAGTC 58 NA Rattus norvegicus 81 Vgll3 ENSRNOG00000028774 ENSRNOT00000042316 1 1 1 99 11 3142743 3142761 ATCTGACTACAGCCACCAC 59 3142824 3164519 TGCTGAAGACCTGTTTCGA 59 NA Rattus norvegicus 81 Cpsf7 ENSRNOG00000020668 ENSRNOT00000028074 2 1 1 80 1 226580060 226580083 CTCTATAGGAGTCTATGATGTGGT 59 226580120 226580511 ACCTCAGCATACCCTTTAGAC 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000092127 2 1 2 60 20 4020430 4020448 CTCATGAGGCCAGATTCCT 59 4020471 4022406 AGGTTGAAGATGAACCTGGG 60 NA DesignRelaxed Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000016967,ENSRNOT00000066780 3 3 3 81 2 257472569 257472587 CATGCTCGCTTCTGATGAG 59 257472264 257472524 GCCTTTAACTGTCCCTGTG 59 NA Rattus norvegicus 81 Gnao1 ENSRNOG00000019482 ENSRNOT00000026373 2 1 1 80 19 11668759 11668780 CCAAAGACGTGAAATTACTCCT 59 11582679 11668523 CATGGATGATCTTCATCTGCT 58 NA Rattus norvegicus 81 Vom2r68 ENSRNOG00000033073 ENSRNOT00000044004 2 1 1 80 14 1111233 1112425 TAATGACACAGCAGATATGGAG 58 1112465 1112484 TGGATACAGTAGGTTTGCTC 57 NA Rattus norvegicus 81 Tesk1 ENSRNOG00000053729 ENSRNOT00000080909 1 1 1 80 5 58940878 58940897 CTTTGGGATTGTCCTCTGTG 59 58940939 58941080 AGACCAAAGTCCTCAGTACG 59 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388,ENSRNOT00000042072 2 2 2 81 1 25716656 25716674 AAACAACACCGAAAGCCAG 59 25710611 25716613 AACGCATACTGATCTTTCTGC 59 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071,ENSRNOT00000042735 1 2 2 80 6 990825 998864 TCTCAGAGAAAGGGATGAGTG 59 990765 990783 AATGCATATCCAGCTGCTC 58 NA Rattus norvegicus 81 Best4 ENSRNOG00000018749 ENSRNOT00000025346 2 1 1 80 5 136017055 136017160 CCGAAACTTTCAGGTGTCC 59 136017204 136017222 TCCCAGTACAGATCCTGCT 60 NA Rattus norvegicus 81 Foxc2 ENSRNOG00000047446 ENSRNOT00000072369 1 1 1 61 19 53045417 53045435 GAAAGTGGTGGTCAAGAGC 59 53045460 53045478 TCTCCACCTTGGTGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904,ENSRNOT00000015223 1 2 2 80 9 20107421 20109976 CATCCTTTCCTGCTGAAAGAG 59 20107361 20107380 ACCGTGATGGTAACTTTCCT 59 NA Rattus norvegicus 81 Wdr82 ENSRNOG00000048441 ENSRNOT00000074771 2 1 1 80 8 114879824 114880200 TTGATAAGGGTCCATTTGCT 57 114880241 114880261 CATCGTTGCTGAACTTAAGTC 58 NA Rattus norvegicus 81 Phf7 ENSRNOG00000018996 ENSRNOT00000044991 1 1 1 80 16 7326117 7326136 GCAAGTGTCGAGAACATCAG 59 7325529 7326074 CGTGTGGGCATATTTCTGG 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000086950,ENSRNOT00000077082 2 2 3 98 20 5080208 5080226 AAGATCTACCGGGAGAGGG 60 5080288 5081178 ATACGAATCCCAGGAGCTG 59 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 1 2 2 80 10 58368974 58370203 AACTGGAAGAGCAAAGAATGG 59 58370245 58370263 CTTGAGCCAGTCTAGGACG 60 NA Rattus norvegicus 81 Tada3 ENSRNOG00000008597 ENSRNOT00000011827 3 1 1 80 4 145322957 145322977 ACATGTCTGGGAAAGAATCAG 58 145322400 145322915 TATGTGGCACACTGAAAGG 58 NA Rattus norvegicus 81 Pdgfb ENSRNOG00000017197 ENSRNOT00000023196 3 1 1 80 7 121222205 121224294 ACTCCGTAGACGAAGATGG 59 121222143 121222161 GAGATGAGCTTTCCGACTC 58 NA Rattus norvegicus 81 Odf3l2 ENSRNOG00000008199 ENSRNOT00000010832 2 1 1 82 7 12945106 12945124 AAAGTTACTCGCTTTGGCC 59 12945170 12946512 GGTGTTACCTCCAGACCTC 59 NA Rattus norvegicus 81 Rn60_16_0001.1 ENSRNOG00000046720 ENSRNOT00000075622 1 1 1 99 16 141124 141145 GTGTCTGGTATATGAGTCAGAC 58 141015 141066 TTTGGTAAGATCTTCTCCCAC 57 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 3 1 2 97 4 39521391 39521409 CAAGTCGAGATGTCGAAGC 59 39522599 39526701 TACAGCTTTGTTCTTCTTGGTC 59 NA Rattus norvegicus 81 Olr1383 ENSRNOG00000047402 ENSRNOT00000044667 2 1 1 60 10 34300775 34300796 TGTCCTCATAAATCAGAAGGTC 58 34300736 34300754 TATCCCAAAGGCCCAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rwdd2b ENSRNOG00000001599 ENSRNOT00000050902 1 1 1 82 11 27088601 27088879 GCCTGAAATTACAGTGAGATCAG 60 27088541 27088559 TCTGCAGGTATGCTGTCAG 60 NA Rattus norvegicus 81 Arsb ENSRNOG00000011150 ENSRNOT00000014860 1 1 1 80 2 23385476 23385494 CCTGGACAACTACTACGTG 57 23385537 23399725 CCCATATGGATCTGATAGCG 58 NA Rattus norvegicus 81 Arsb ENSRNOG00000011150 ENSRNOT00000014860 3 1 1 80 2 23385478 23385497 TGGACAACTACTACGTGCAG 60 23385538 23399727 AGCCCATATGGATCTGATAGC 59 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 3 1 1 60 9 24506387 24509645 TTCGATCACAATACTAACAGGC 59 24506348 24506366 CCTCAAGTCCAAGCTACCA 59 NA DesignNoJunction Rattus norvegicus 81 Ikbkg ENSRNOG00000060936 ENSRNOT00000078438 3 1 1 86 X 156270600 156270619 ACATCTTCCTTCAGAGCAGG 60 156269565 156270551 CTCTGCCGGATAGCATCTC 60 NA Rattus norvegicus 81 Prickle3 ENSRNOG00000022417 ENSRNOT00000013758 2 1 1 80 X 15685477 15685586 TGTGATGAGATCATCTTCTCCC 60 15685418 15685437 CTCGAAACAGCAGAAGTGAC 59 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 1 1 1 112 7 102589128 102589146 CTCTTCTTCCTCGGACTCG 59 102589222 102590239 CTTCTTCAGAGTCGCTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000090717 3 1 2 80 4 61924602 61936640 AACATCTAGAAGTGCTTTCCG 59 61936679 61936700 CAGAAAGATGAAGTAACAGGCA 59 NA Rattus norvegicus 81 Lrp3 ENSRNOG00000011451 ENSRNOT00000015384 2 1 1 81 1 91451859 91452189 TCCTATATCCGAGGGAAGCT 59 91451797 91451815 GACCAGGCAAGCATTTACC 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000071482 1 1 2 80 13 73709033 73718245 AACAGAAATCGAGGTGTGAC 58 73718288 73718306 TATCTGGACCCAGTCACAG 58 NA InUTR Rattus norvegicus 81 Hao1 ENSRNOG00000004601 ENSRNOT00000006330 3 1 1 81 3 127453250 127453269 GTTAAACATGGTGTGGATGG 57 127448723 127453206 GGGCATCAATAGTAGCTGG 58 NA Rattus norvegicus 81 Prr18 ENSRNOG00000024149 ENSRNOT00000033528 3 1 1 134 1 52991558 52991576 CTCTAGCTGTGGCTGTCAG 60 52991442 52991460 TGTGCTTCTCATTGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0141.1 ENSRNOG00000001226 ENSRNOT00000037297 2 1 1 60 20 11928657 11928678 GGGATTTCTGTATTCAAGTTGG 58 11928618 11928636 GCACTCTCCACTGAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh12 ENSRNOG00000056553 ENSRNOT00000089162 3 1 1 80 6 102394730 102394748 AGGTAGTGGTCATCACAGG 58 102394792 102395230 ATACTCGTGCTCCTCTTCG 59 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884,ENSRNOT00000033265 3 2 2 80 4 68812980 68812998 TGGTTTGATACGTCAGCCT 59 68811652 68812937 TCCTGATTGGTAACATTGCC 58 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 2 1 1 88 1 5381502 5381523 GGAATGGTAATATTGCAGTGGG 60 5381572 5387076 GTACTGAATCGCCACACCT 60 NA DesignNoJunction Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 1 1 2 137 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120109 4124688 ACACTGATCCTCTCAGATTCC 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456,ENSRNOT00000063821,ENSRNOT00000088313,ENSRNOT00000045532 1 4 4 80 2 18516706 18521917 CACTCTGCGAACAAGACAC 59 18516644 18516665 GATGAGCAAAGTACTTGTAGCA 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456,ENSRNOT00000063821,ENSRNOT00000088313,ENSRNOT00000045532 2 4 4 81 2 18516706 18521917 CACTCTGCGAACAAGACAC 59 18516643 18516664 CGATGAGCAAAGTACTTGTAGC 60 NA Rattus norvegicus 81 Alox15 ENSRNOG00000019183 ENSRNOT00000026038 2 1 1 80 10 56955517 56955625 TTTGACAAGGCAATGAGCA 58 56955455 56955474 TGAGCAATAGGTCAGAAAGG 57 NA Rattus norvegicus 81 Pdzrn4 ENSRNOG00000022844 ENSRNOT00000038686 2 1 1 80 7 133935710 133935730 GAAGACCATGAGTACGTTTCC 59 133935772 133977282 ACACAACTCGACTTCCTCG 60 NA Rattus norvegicus 81 Tom1 ENSRNOG00000014093 ENSRNOT00000018880 1 1 1 80 19 14410444 14410462 AAGGGCCTAGAATTTCCCA 58 14410501 14410614 CTCTGAGTTGAATACAGTTCTCTG 59 NA Rattus norvegicus 81 Mir26b ENSRNOG00000035608 ENSRNOT00000053731 2 1 1 60 9 81675283 81675304 ACCCAGTTCAAGTAATTCAGGA 60 81675324 81675343 CCAAGTAATGGAGAACAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066965.1 ENSRNOG00000050239 ENSRNOT00000068080 3 1 1 92 9 23905326 23919865 CTGAAGGAAGGGTACTGCC 60 23905252 23905270 AGTCAGTCTTGTCCAAGGC 60 NA Rattus norvegicus 81 Suclg2 ENSRNOG00000005686 ENSRNOT00000068274 2 1 1 80 4 127579949 127579967 CATTGCCAACGGAATCACC 60 127553128 127579908 ACATTAGTTCCTTCAAGACGGA 60 NA Rattus norvegicus 81 LOC100910170 ENSRNOG00000049242 ENSRNOT00000047899 2 1 1 60 7 16035837 16035857 TTCTCCTTGCTATCATGTCCT 59 16035797 16035817 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000083401 3 2 3 80 12 37377763 37377781 GTCATGTTCCTGTTTGCCC 60 37377339 37377722 CATCCTAAGGATCTCCTGTGAC 60 NA Rattus norvegicus 81 Proser1 ENSRNOG00000010980 ENSRNOT00000014614 1 1 1 80 2 142699990 142700011 CCATTAGCCAATGTGATAGCTC 59 142700052 142700325 GTCTTCGTTGTCTGCTCCT 60 NA Rattus norvegicus 81 Sap30 ENSRNOG00000013218 ENSRNOT00000017652 1 1 1 80 16 36118401 36118420 AGAAGGAAGAGGAAAGGGAG 59 36118460 36118828 GTACAAATCAACCTCTGGAGTG 59 NA Rattus norvegicus 81 Pde6h ENSRNOG00000005947 ENSRNOT00000007905 3 1 1 86 4 170960866 170962777 GCTAGGAACAGATATCACGG 58 170962826 170962844 CAGATGATCCCGAACTGAG 57 NA Rattus norvegicus 81 Spt1 ENSRNOG00000036825 ENSRNOT00000055268 1 1 1 80 7 145337324 145338061 CTATTCTAGTCTCTTGCCAGGA 59 145336477 145336495 TTCCAGAGTCAGTGGTTCC 59 NA Rattus norvegicus 81 Ndufaf7 ENSRNOG00000005279 ENSRNOT00000007000 3 1 1 83 6 1541068 1541086 ATCGACCCACAATCTCCTG 59 1541132 1542787 TTCATCGCGTTGTATGAAGG 59 NA Rattus norvegicus 81 Ces5a ENSRNOG00000025710 ENSRNOT00000049452 1 1 1 80 19 12125903 12126856 TACATGTCTTGCTGCATATTCC 59 12126897 12126915 CAGTCAGAGAATGCTTGCC 59 NA Rattus norvegicus 81 AABR07062266.1 ENSRNOG00000049892 ENSRNOT00000073394 1 1 1 60 4 166602671 166602691 AGAATCTGATAGGTGGAGGAG 58 166602713 166602744 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911585 ENSRNOG00000047890 ENSRNOT00000071593 1 1 1 80 9 20248012 20248031 CAGATTGAAACTCTGGACGG 59 20248071 20250235 GTCACTGATCATGTTACTCCTC 58 NA Rattus norvegicus 81 Spata31d1d ENSRNOG00000027014 ENSRNOT00000039803 3 1 1 86 17 5321183 5321203 ACAGACCAGTCAAGGAATCAG 60 5321998 5322580 CCGTGTAAGTTTCTGAATTCGT 59 NA Rattus norvegicus 81 Anapc7 ENSRNOG00000001283 ENSRNOT00000001729 2 1 1 80 12 39625010 39627025 ACACCATCTGTTCGCTAGAG 60 39624949 39624967 TGAAGTACAGGTCTGCCAG 59 NA Rattus norvegicus 81 Anapc7 ENSRNOG00000001283 ENSRNOT00000001729 3 1 1 80 12 39627066 39627084 GTCCGTGTGGATTAAAGCA 58 39625008 39627023 TTCTCTAGCGAACAGATGGT 59 NA Rattus norvegicus 81 Olr1273 ENSRNOG00000046225 ENSRNOT00000073329 2 1 1 60 2 115225683 115225704 TGTTTCTTGTACACAGTGATGG 59 115225723 115225743 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 3 2 2 80 2 122504607 122507154 GCATGACAGAGTTAGGATGTG 59 122504547 122504568 CTGGTTCTTTCAATTCTTGCTC 58 NA Rattus norvegicus 81 LOC691828 ENSRNOG00000048425 ENSRNOT00000073779 2 1 1 60 6 140879846 140879864 CATCTCCAGAGACAATGCC 58 140879804 140879822 CTCAGATCCCAGTTTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tectb ENSRNOG00000015671 ENSRNOT00000021041 1 1 1 80 1 275958844 275960393 CCAGTCAGAGTACAAGCCT 59 275960437 275960455 TGGTTCTTCACAATCACGG 58 NA Rattus norvegicus 81 Col7a1 ENSRNOG00000020579 ENSRNOT00000027994 1 1 1 80 8 117701863 117701882 GTACCATGTATGGCTGAGTG 58 117701924 117702172 TGAGGAGTCTCAGTGTAAGC 59 NA Rattus norvegicus 81 RGD1306474 ENSRNOG00000005790 ENSRNOT00000007610 1 1 1 80 7 60309707 60309726 ATGTTTGCTAGCCAGAACTC 58 60308971 60309664 GCCAAACAGATCCAATTCG 57 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000039761 ENSRNOT00000060991 3 1 1 108 10 12467965 12467983 ATTAGCACAGACTCCCACC 59 12467604 12467893 GGGATGATGTTGTCTTGGG 58 NA Rattus norvegicus 81 Tmem145 ENSRNOG00000020489 ENSRNOT00000027783 1 1 1 80 1 82175516 82175534 GCTGTCAGAACATCCTCCT 59 82175578 82175688 CCAAACAGTCCTTGTCCCT 60 NA Rattus norvegicus 81 Olr896 ENSRNOG00000031510 ENSRNOT00000040141 3 1 1 60 7 5195333 5195355 GCTGTCTTTACCCTAATGTTCAC 60 5195295 5195316 TGATGATGCATATGTAGGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 2 2 2 80 7 58340391 58342732 ACCTATTATGGTAGCTTGCG 58 58340330 58340351 ATTACAGGAGATCACAACAGAG 58 NA Rattus norvegicus 81 Camta2 ENSRNOG00000004283 ENSRNOT00000056622 1 1 1 80 10 57305366 57305384 GAAGAAGCGGAAAGATGGG 59 57304786 57305322 CAGCCATAGAGACACTCCA 59 NA Rattus norvegicus 81 Rpl30 ENSRNOG00000005975 ENSRNOT00000057587 1 1 1 80 7 73214482 73214502 TAACATTGAATTGGGCACAGC 60 73213618 73214441 ATATCGGAATCACCTGGGTC 59 NA Rattus norvegicus 81 Sertad1 ENSRNOG00000024363 ENSRNOT00000028468 3 1 1 97 1 84293206 84295323 TGATCTGGAGGATGCTGAG 59 84295384 84295402 GCTTTGATCCAACCACCAC 60 NA InUTR Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973,ENSRNOT00000080188 2 2 2 80 10 109581003 109581022 GGATGGATATTCACGGACCT 59 109580198 109580964 GAAATAGGTGTCCTTATTCCGAC 59 NA Rattus norvegicus 81 Crip2 ENSRNOG00000005041 ENSRNOT00000006804 1 1 1 105 6 137956697 137956715 CTGCAACAAGACACTGACG 60 137956783 137957035 GATATTCACGCCTTTGGGTC 59 NA Rattus norvegicus 81 Il9 ENSRNOG00000012131 ENSRNOT00000016187 1 1 1 93 17 8558888 8558906 CTCTTTGGGTCTGTCCTGG 60 8558963 8559070 ATGATGGGTCGTCCTTCAG 59 NA Rattus norvegicus 81 RGD1307704 ENSRNOG00000010126 ENSRNOT00000013431 3 1 1 60 6 107430312 107430333 AAAGACTTCATTCACGATTCCC 59 107430354 107430372 CACTTAGAGCCCTTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076208,ENSRNOT00000055235 3 2 3 116 1 167321103 167321121 CTGCTCAAGATCCCTCCAG 60 167321200 167323704 TCTTGTCAGACTCAAAGCCA 59 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020,ENSRNOT00000079072 3 2 2 80 1 186148247 186148267 AGTCAAGTGAAGATGGAAAGC 59 186148307 186169962 TCATTGCTTTGCTTCCTTCTG 60 NA Rattus norvegicus 81 Mis18a ENSRNOG00000021555 ENSRNOT00000037444 3 1 1 80 11 30885789 30890271 GAGATGAAGATGGTTGCATCC 59 30885729 30885749 GAGTGCATCTGTACACATAGC 59 NA Rattus norvegicus 81 Asic4 ENSRNOG00000019985 ENSRNOT00000027135 1 1 1 80 9 82647902 82647920 CTGACATGCTCAAGAGCTG 59 82647961 82662940 TTCCATAGCGAGTATAGACCAC 59 NA Rattus norvegicus 81 Asic4 ENSRNOG00000019985 ENSRNOT00000027135 3 1 1 80 9 82647899 82647917 TTGCTGACATGCTCAAGAG 58 82647959 82662937 CATAGCGAGTATAGACCACAG 58 NA Rattus norvegicus 81 Oprd1 ENSRNOG00000010531 ENSRNOT00000014084 3 1 1 119 5 150293020 150322739 ATCGTCCGGTACACTAAGC 59 150292919 150292938 CGTTTCCATCAGGTACTTGG 59 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 2 2 2 80 2 207360266 207368507 CCTTCAGACACAGTTATGCAG 59 207368548 207368567 CTCTAAAGCTTGGTAGGCTG 58 NA Rattus norvegicus 81 Inhbe ENSRNOG00000007601 ENSRNOT00000010106 2 1 1 123 7 70642646 70642664 GAATAACTCGTCCTCTGCC 58 70642168 70642560 GTGGATTTGTCTATGCTGGT 58 NA Rattus norvegicus 81 Hunk ENSRNOG00000002092 ENSRNOT00000002866 2 1 1 80 11 30642837 30647719 GTTATCTGTCAGGGAAATCGG 59 30647758 30647779 TAGCTCTGCACTTCTCTATCTG 59 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508,ENSRNOT00000035009 3 2 2 80 16 7352158 7352316 AGATCCAGGCTAAGGTCAG 58 7352096 7352114 CAGCCACAGGTATGTACTC 57 NA Rattus norvegicus 81 Myl2 ENSRNOG00000030848 ENSRNOT00000050368 1 1 1 82 12 39957150 39957169 GAATGACCTAAGGGACACGT 60 39954982 39955004 CTGGAGCCTCGATCATCTC 60 NA Rattus norvegicus 81 Fra10ac1 ENSRNOG00000015235 ENSRNOT00000020620 2 1 1 80 1 256904772 256904793 GACAGATCTGGATGTTATACGA 57 256903762 256904732 CTCTTCTCCCAAGTCATGTC 58 NA Rattus norvegicus 81 LOC297568 ENSRNOG00000042228 ENSRNOT00000041957 1 1 1 80 4 154810347 154811057 TAGTCCAAACCCAACAAGAG 58 154810286 154810307 ATAACTGGATCTTTAGGTGGTG 58 NA Rattus norvegicus 81 Pkd2l1 ENSRNOG00000012591 ENSRNOT00000068007 2 1 1 80 1 263958347 263958368 AGCTTTATGTCAAGACTACCCT 59 263932203 263958307 TTCCGTAGGTCAACAGACAG 60 NA Rattus norvegicus 81 Plgrkt ENSRNOG00000015932 ENSRNOT00000021544 3 1 1 82 1 247504943 247504961 CTGGTCTCGGGAATTCCTC 60 247504305 247504897 TTCGCTTTATTGCTCCAGC 59 NA Rattus norvegicus 81 Nppc ENSRNOG00000018854 ENSRNOT00000025582 1 1 1 132 9 93734807 93734825 AACAAGAAGGGCTTGTCCA 60 93731904 93731922 AAGGATGACCTCAGTGCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt222 ENSRNOG00000010839 ENSRNOT00000014414 1 1 1 80 10 87147702 87147720 CTCAACACGAAGATGAGGC 59 87145757 87147661 ACCGTAATACCTGATCTCTTCC 59 NA Rattus norvegicus 81 Htr2b ENSRNOG00000017625 ENSRNOT00000023829 3 1 1 86 9 93113995 93116201 GGTTAATTTCAATAGGCATCGC 59 93113930 93113948 GCTCACAGGTGATGTTGTG 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 1 2 2 80 10 89957717 89957739 GAGAAACTCCGCTATTATGAGAG 59 89956456 89957677 CTCCATCACATCCTCAGCA 59 NA Rattus norvegicus 81 Klhdc7b ENSRNOG00000032419 ENSRNOT00000040769 3 1 1 60 7 130358624 130358643 TACCTCCATGTGTTCAACCC 60 130358666 130358684 CCTCCGGTACTTGAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076,ENSRNOT00000090114 3 2 2 80 8 58138947 58138967 CTAAACAGACAGAAAGCAGCC 60 58139008 58140462 ACATGTGGATTTCACTCGGA 60 NA Rattus norvegicus 81 Rpl7 ENSRNOG00000006992 ENSRNOT00000009431 1 1 1 80 5 2634680 2635028 ATCCGAGGTATCAATGGAGTG 60 2635070 2635088 GGTGCCATTGAAGATCTGC 59 NA Rattus norvegicus 81 Olr1421 ENSRNOG00000050694 ENSRNOT00000051126 3 1 1 60 10 44081863 44081882 GTGTCTCCTTCTGTTGTCTG 58 44081822 44081841 GGTGAATATGAAGCCATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr45 ENSRNOG00000016446 ENSRNOT00000021999 3 1 1 60 9 49838230 49838248 GATGCTGCTGATGATTGTG 57 49838272 49838290 GTACACGATGATGCAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Artn ENSRNOG00000019842 ENSRNOT00000026852 2 1 1 93 5 136762639 136762658 ATGATCCATTTGAGCTTCGG 59 136761279 136762583 CTTCTTGAGGCAGCAAAGG 59 NA InUTR Rattus norvegicus 81 Spint5p ENSRNOG00000014807 ENSRNOT00000051826 1 1 1 87 3 161178310 161179452 ATCTTGGAAGCAACCAACC 58 161179503 161179521 TCACATAAGGCTGTGTCCT 58 NA Rattus norvegicus 81 Grk5 ENSRNOG00000011439 ENSRNOT00000015687 1 1 1 80 1 282354468 282354488 AAGAAGTGGAAGGAAATCCTG 58 282354524 282396520 GTAGTAATCTCTGTCTATGGTTCTC 58 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678,ENSRNOT00000016205 1 2 2 80 7 143792698 143792716 GAGGTGCTGAAGAAACTCC 58 143792231 143792655 GTTAGAGATGGAACCACCAG 58 NA Rattus norvegicus 81 Nipsnap3a ENSRNOG00000039113 ENSRNOT00000059828 1 1 1 80 5 69814458 69816192 GAAGTATGATAGTTATGCTCAGCG 60 69816230 69816249 ATGAGGAATCGTTCTTGCCA 60 NA Rattus norvegicus 81 RGD1563613 ENSRNOG00000029737 ENSRNOT00000044779 1 1 1 60 6 57396447 57396467 GAAGATTCTAGGTTCCTTGGT 57 57396483 57396507 GATAAGTCCTTTACTAAGTAGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563613 ENSRNOG00000029737 ENSRNOT00000044779 2 1 1 60 6 57396447 57396468 GAAGATTCTAGGTTCCTTGGTC 58 57396483 57396507 GATAAGTCCTTTACTAAGTAGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxg1 ENSRNOG00000047891 ENSRNOT00000075349 1 1 1 60 6 69971670 69971688 GCTGGACATGGGAGATAGG 59 69971712 69971730 GTTGATGCTGAACGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps10 ENSRNOG00000052141 ENSRNOT00000043250 1 1 1 60 6 75429915 75429936 GCTTGGAGACATTTCTATTGGT 59 75429956 75429975 GGTAATCTCGGAGGTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otp ENSRNOG00000010560 ENSRNOT00000014036 3 1 1 117 2 24548135 24548154 CTCAACGAATTGGAGAGGAG 58 24548234 24554168 GATTCTGGAACCAGACCTG 58 NA Rattus norvegicus 81 Rsbn1 ENSRNOG00000019671 ENSRNOT00000026631 1 1 1 80 2 206407048 206439490 TTTCATACTCAGGTCAACAGG 58 206439530 206439550 TGCTCCAACAAGACTTATCTG 58 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000077032,ENSRNOT00000076270 3 2 3 60 20 5118281 5118300 CTCAACAGACACTTCCTCCT 59 5118323 5118341 CCTGGATTTGAGGAACCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pign ENSRNOG00000014866 ENSRNOT00000020752 3 1 1 80 13 25617186 25619719 TAATTCGGTGGGAATACTTCCT 59 25617127 25617147 ACTGCATTGGTAAACATGCTC 60 NA Rattus norvegicus 81 Usp51 ENSRNOG00000021434 ENSRNOT00000029397 1 1 1 157 X 19270224 19270242 ACTTTCTAGATCAAGCGCG 58 19271101 19271119 TTCTCGATGCATTCTCAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 2 2 2 80 10 56228463 56228668 TCAGTGAAGAAGCCCTGAG 59 56228712 56228730 GGGCTGGAATAATCTCTGC 58 NA Rattus norvegicus 81 AABR07025299.1 ENSRNOG00000047664 ENSRNOT00000072321 1 1 1 80 16 32299432 32299462 GGCCACATACATGAAGGGT 60 32299339 32299357 TGGGTGACGTTGTAGACTC 59 NA Rattus norvegicus 81 Cyp4f1 ENSRNOG00000004786 ENSRNOT00000006533 1 1 1 80 7 15183325 15183347 GGATGAGTTTCTCAAGTCTAAGG 59 15182406 15183286 CCATCTTCATCCTTGGTCAG 58 NA Rattus norvegicus 81 E2f7 ENSRNOG00000026252 ENSRNOT00000031986 1 1 1 80 7 53297838 53307476 AGCTCCATTGATGAAGAACTC 58 53307515 53307536 TCGAATCTGACCATATGTTTCC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 1 4 4 80 10 65307777 65307795 ACCAAGATTGCTGACTCCA 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 Tmc7 ENSRNOG00000016679 ENSRNOT00000022800 3 1 1 80 1 188216974 188216994 TATCCAATCAGTAGCTCTGGG 59 188213302 188216932 TTCCTCCAAGAATCCCGTG 59 NA Rattus norvegicus 81 Dlec1 ENSRNOG00000032085 ENSRNOT00000052275 3 1 1 80 8 127815978 127816116 CACATTTAAGGGACCCGTG 59 127816160 127816178 ATCGAAGCCTTCTTTCCCA 59 NA Rattus norvegicus 81 LOC100359763 ENSRNOG00000013191 ENSRNOT00000017602 3 1 1 60 7 93376558 93376577 GGAGCTACGTAGTAAAGGAC 57 93376598 93376618 GTAAATTACTTGGGCTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco1a6 ENSRNOG00000030894 ENSRNOT00000048367 1 1 1 80 4 176346314 176349811 ATAGCTTCAGGAGCATTTACC 58 176346254 176346275 GTCTTAGAATGAAGAAGGCAGG 59 NA Rattus norvegicus 81 Cpne8 ENSRNOG00000026128 ENSRNOT00000039857 1 1 1 80 7 131632633 131634221 CTGCAGAATTTGATGCAATGG 59 131632573 131632593 TGTCTCTTTCGGCATATTTCC 59 NA Rattus norvegicus 81 Lpcat2 ENSRNOG00000016643 ENSRNOT00000022359 3 1 1 80 19 15520523 15521806 CCCAACAAGCTGGATACTG 58 15516630 15516649 CAGTTGACAGAATGTGAGCA 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 1 3 3 80 8 77291911 77293882 GAAGAATCACAGGGCTGGA 59 77291849 77291868 TGGCATCATCTGGAGAAAGG 60 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596,ENSRNOT00000080691 2 2 2 80 X 157353836 157353855 CAGCTACTACGAAGATGTGG 58 157353894 157354654 CAGCTAATACCCTTTAGCTTCTC 59 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000091053 2 1 2 67 7 143883608 143883626 TCTTCCTTGTACCGCATCG 60 143883741 143883759 GCGATAAAGGATTCCACGG 59 NA DesignNoJunction Rattus norvegicus 81 Wdr11 ENSRNOG00000020430 ENSRNOT00000027704 3 1 1 80 1 202813957 202813976 ATAGAGCTGCCTTGTTTGTG 59 202814018 202815420 CAGTGATGAGCTTCTCTGTG 58 NA Rattus norvegicus 81 Rnf208 ENSRNOG00000010607 ENSRNOT00000014087 2 1 1 229 3 2462473 2462491 CTGACCTCTGCTACAGGAG 59 2462872 2462890 CTTTCAGGCAGGACATGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 2 2 2 80 10 90307282 90307300 CTTCCCACAGAGCAAACAG 59 90306475 90307239 TACATAGACCTGACTGGAGC 58 NA Rattus norvegicus 81 Acaa1a ENSRNOG00000032908 ENSRNOT00000045049 2 1 1 104 8 128035689 128035745 TCCCTAGAAGAAAGGTGAACC 59 128035811 128035829 GCTTCAGCTCATTGAGCAG 59 NA Rattus norvegicus 81 AABR07066949.1 ENSRNOG00000046783 ENSRNOT00000064279 1 1 1 94 9 23597021 23600993 ACTGAAGGAAGGGTACTGC 59 23601051 23601069 GAGTCAGTCTTGTGCAAGG 59 NA Rattus norvegicus 81 Cep44 ENSRNOG00000010566 ENSRNOT00000014083 2 1 1 81 16 37182468 37182492 CTTCTGATGGAATCCAATATAGAGC 59 37182526 37183660 GATCACGAAGAAGCTTATAGACAG 59 NA Rattus norvegicus 81 RGD1564405 ENSRNOG00000008382 ENSRNOT00000011083 1 1 1 81 5 3676089 3676465 AACCTCAGAACCTCAGTTCTG 60 3676507 3676526 CTCGTGTCTACAACTTGCTG 59 NA Rattus norvegicus 81 Mtl5 ENSRNOG00000014671 ENSRNOT00000019861 1 1 1 80 1 218635682 218635701 AGTTCTCATCATCCCAGGAG 59 218635744 218637407 GCTGACAAATCACCATGGG 59 NA Rattus norvegicus 81 Sh3bp5 ENSRNOG00000052391 ENSRNOT00000082172 1 1 1 80 16 7475261 7475281 TGATGTTCCCAATACTGGGTC 60 7474754 7475219 CTCTGTCTCCTCGTTCCAC 60 NA Rattus norvegicus 81 Rasgef1c ENSRNOG00000003005 ENSRNOT00000059277 1 1 1 80 10 35455108 35455126 TCCTTTCGAGCAAGATCCA 59 35455170 35457724 GAAGCCAAATACAGACCGT 58 NA Rattus norvegicus 81 Fam212b ENSRNOG00000015691 ENSRNOT00000021001 2 1 1 83 2 208170869 208182821 AAACAGGAGCTGATGTCCA 59 208182868 208182886 CAGTTCTTGAAGTGCACCC 59 NA Rattus norvegicus 81 AABR07020443.1 ENSRNOG00000047721 ENSRNOT00000061779 2 1 1 80 13 26465989 26466007 AAGCAAAGCATCTGACAGC 59 26466049 26466374 TCATTTGTAGATTCACCCTGC 58 NA Rattus norvegicus 81 Phf19 ENSRNOG00000018874 ENSRNOT00000025528 2 1 1 80 3 13966937 13966956 GTTCTACCTGTTCTTCTGCT 57 13966745 13966896 ACTATGTCTACCCATCTCAGG 58 NA Rattus norvegicus 81 Phf19 ENSRNOG00000018874 ENSRNOT00000025528 3 1 1 80 3 13966936 13966956 GTTCTACCTGTTCTTCTGCTC 59 13966745 13966896 ACTATGTCTACCCATCTCAGG 58 NA Rattus norvegicus 81 AABR07011278.1 ENSRNOG00000046074 ENSRNOT00000075563 1 1 1 80 2 160291876 160291894 AAACTACTGGCTGACCAGG 59 160292210 160292229 GGTGGGTACTTGTTCCTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Il1b ENSRNOG00000004649 ENSRNOT00000006308 1 1 1 80 3 121879040 121879579 TTCATCTTTGAAGAAGAGCCC 58 121878980 121879001 CTGTCTAATGGGAACATCACAC 59 NA Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000090726 3 1 2 89 16 23972362 23974993 TACTACAGGGAGCCATGGA 59 23972291 23972310 CAGTTAATGTGGCCAAGTCC 59 NA InUTR Rattus norvegicus 81 LOC100909700 ENSRNOG00000048783 ENSRNOT00000071704 2 1 1 80 1 81624555 81625754 GTCTTCAGTTAGGTCCGCA 59 81624493 81624512 TCAGGTGCAGATCAGATACG 59 NA Rattus norvegicus 81 Zfp91 ENSRNOG00000012524 ENSRNOT00000016804 3 1 1 80 1 229606737 229606755 GGCTTTCAAGAGTTCCCAC 59 229606138 229606697 CCACAGATCTCACATTGTAATGG 60 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076179 1 1 2 60 1 134993400 134993419 AAGCAAATGCGACTTTACAC 58 134993441 134993460 TTTCCGAGCTTCTGATTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025633,ENSRNOT00000025600 3 2 2 80 2 205854040 205854059 GAACGTCTTCTGCTTTACCT 58 205854099 205856556 GTAGTTTGGTATCGAAACAGGA 58 NA Rattus norvegicus 81 Gucy2d ENSRNOG00000007931 ENSRNOT00000010790 2 1 1 80 10 55849711 55849729 CTTCAGACCTGTCTGGAGC 60 55849555 55849669 GCATCACCATGATAACCACTC 59 NA Rattus norvegicus 81 Dscr3 ENSRNOG00000001681 ENSRNOT00000002284 3 1 1 80 11 34777657 34777676 ACTGTAAACCTCCAGCTCAG 60 34776150 34777616 GATAATCTGGATCGGCTTCAC 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 2 5 10 83 10 87127013 87127032 AAAGTCGACAGAGACAGTCG 60 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 1 8 10 80 10 87127518 87128305 TACAGCAGAAAGGTCTGGG 59 87127456 87127474 GCCACCAATAATCTTGCCA 59 NA Rattus norvegicus 81 Vit ENSRNOG00000004706 ENSRNOT00000006360 1 1 1 80 6 1184692 1201003 TGTTGTTCAGTACGGAGAC 57 1201044 1201065 ATAGCTGTCTTCAGATCTTGAG 58 NA Rattus norvegicus 81 Muc16 ENSRNOG00000039931 ENSRNOT00000061339 2 1 1 80 8 18459026 18459044 AGACACTGAATGCTTCCTC 57 18457642 18458985 TGGATGTCTTCATGTCTATCAC 58 NA Rattus norvegicus 81 RGD1564184 ENSRNOG00000046289 ENSRNOT00000048829 3 1 1 60 3 17009123 17009143 GTCAGGTCTTCGTATTTCTGC 59 17009353 17009376 GTCATCACAGTATTCCCATAAACC 60 NA DesignNoJunction Rattus norvegicus 81 Col4a3bp ENSRNOG00000015686 ENSRNOT00000021549 1 1 1 80 2 27463918 27463936 GACTGAGAACGACCCTGAG 60 27463978 27464709 ACACATCGATTGTTCAGAGGA 60 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 2 2 2 80 4 66418797 66420755 TGACCCAGACACATTCACC 60 66420798 66420817 AGACACTCTGTTGACACCAG 60 NA Rattus norvegicus 81 Ndufs2 ENSRNOG00000038372 ENSRNOT00000058423 2 1 1 80 13 89610210 89610230 CCAGCCATATGATGTTTACGA 58 89609487 89610170 CACAGATACCTATCGTAGCAG 58 NA Rattus norvegicus 81 Fam19a3 ENSRNOG00000030253 ENSRNOT00000040772 2 1 1 99 2 207254763 207255521 ATCCACAGTCCTAGTGAAGC 59 207254683 207254701 GCATTTGACCGTTTGGGAG 60 NA Rattus norvegicus 81 Fpgs ENSRNOG00000050780 ENSRNOT00000070916 3 1 1 80 3 11723164 11723264 ATCATCAGAAAGCCAGTGGT 59 11723103 11723124 TTTCTCCACTGTATCTCCTAGC 59 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 2 2 2 80 7 55149594 55149613 AACAGTACCCAGAGTGACAC 59 55149655 55151648 GTCGTCACCTGATAACACTG 58 NA Rattus norvegicus 81 Fgf11 ENSRNOG00000014882 ENSRNOT00000020152 2 1 1 82 10 56406878 56406896 CCAGGGTTTCTACCTCCAG 59 56406604 56406833 GATTGAAGTGGGTGAAGGAG 58 NA Rattus norvegicus 81 Eny2 ENSRNOG00000004681 ENSRNOT00000006402 2 1 1 80 7 83350108 83350126 GATGAACAAAGATGCGCAG 58 83350170 83352984 AACTCTTTGAGGCGTTCTC 58 NA Rattus norvegicus 81 Eny2 ENSRNOG00000004681 ENSRNOT00000006402 3 1 1 80 7 83350166 83352982 GAAAGAGAACGCCTCAAAGAG 59 83353022 83353042 TTTACAGTGTGCCTTCAACTG 59 NA Rattus norvegicus 81 Coq2 ENSRNOG00000002194 ENSRNOT00000002987 2 1 1 84 14 10591639 10591657 TTCCAGTCCTTCGTCTTCC 59 10591699 10593318 CCATTGCTATACTGTAGTAGTTCAG 59 NA Rattus norvegicus 81 Tyw3 ENSRNOG00000028328 ENSRNOT00000032874 3 1 1 80 2 260880595 260881443 TGAAAGATGACGTGATGGC 58 260880533 260880552 GCACATGGAGGATAAATGGT 58 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 2 2 2 90 9 42881972 42882293 ACTATGAGAGGCTGGTCCT 59 42882347 42882365 TTGTATTGCTTCCTGGGCT 59 NA Rattus norvegicus 81 Rrm2b ENSRNOG00000025454 ENSRNOT00000033704 2 1 1 80 7 76774841 76780647 GAGGGTGAGCAATTGTGTC 59 76774779 76774797 TCGGGAACTCTTTCTGAGG 59 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157,ENSRNOT00000088824 3 2 2 80 9 38326927 38342838 CATGCTGCAAGTGTTACCG 60 38342880 38342900 CCTCCACTCTTAAGAAGGGTC 60 NA Rattus norvegicus 81 Ankrd23 ENSRNOG00000016151 ENSRNOT00000039437 1 1 1 80 9 43113013 43113126 ATAGAAACTCGAGATTTGCTGG 59 43112954 43112972 CAGCTGCTTGAGAATGTCC 59 NA Rattus norvegicus 81 Ankrd23 ENSRNOG00000016151 ENSRNOT00000039437 2 1 1 80 9 43113012 43113125 TAGAAACTCGAGATTTGCTGGA 60 43112953 43112971 GCAGCTGCTTGAGAATGTC 60 NA Rattus norvegicus 81 Coq5 ENSRNOG00000001171 ENSRNOT00000001546 1 1 1 80 12 47079414 47079514 CCAAATCAGGAAGAGTTCAAGG 59 47079355 47079373 AATCCCTGAAGTCAGGCTC 59 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843,ENSRNOT00000063781 3 2 2 99 9 43000896 43000914 GCTGACTGGAGTAAGGACC 60 43000494 43000833 TGGTGGTTCTGTCATCTCC 59 NA Rattus norvegicus 81 Adamts17 ENSRNOG00000037080 ENSRNOT00000055877 2 1 1 80 1 127882794 127882812 CTGCTGTGTTTGTGACCAG 59 127887909 127939776 CTCCTAAGTAAGCAATTCCAACG 60 NA Rattus norvegicus 81 Setmar ENSRNOG00000006806 ENSRNOT00000008892 3 1 1 81 4 140092549 140103135 CCTAAACCTTTCCAGTATACTCC 58 140103174 140103194 AACCAGGGAAGGTTATTTGTG 59 NA Rattus norvegicus 81 RGD1309110 ENSRNOG00000017574 ENSRNOT00000055960 3 1 1 80 2 209001342 209001860 GAATGTTCAACTTGACTCTGC 58 209001282 209001300 ATACCTCTCACATCTGGCT 58 NA Rattus norvegicus 81 Hnf1b ENSRNOG00000002598 ENSRNOT00000047427 2 1 1 80 10 71164943 71170466 ATCCTCCGACAGTTCAACC 59 71170508 71170528 GAGAAATAGCAGCTGATCCTG 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 1 2 2 81 11 31810429 31812689 CAAGCCGGACTTGAAAGAG 59 31812734 31812752 TTTGGTGGGAACTTCATCG 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 1 2 2 80 1 89353353 89354513 CTGAGCGTCATGTATGCAC 59 89353291 89353309 CAGGATGGAGACTGTCTCC 59 NA Rattus norvegicus 81 Srgap1 ENSRNOG00000004603 ENSRNOT00000006180 1 1 1 80 7 64033466 64040878 TGGAGAAGGTCATAGAGCTG 59 64030898 64030917 CTGGACTTCCTGTGTTTCTG 59 NA Rattus norvegicus 81 Scd1 ENSRNOG00000013552 ENSRNOT00000018447 3 1 1 80 1 264168747 264168765 ACAGGACTTACAAGGCTCG 59 264167507 264168705 CATACACATCGTTCTGGAACG 60 NA Rattus norvegicus 81 Ccm2l ENSRNOG00000009191 ENSRNOT00000012187 1 1 1 80 3 148554827 148555648 GATTACATGGTCACGCTGC 59 148555692 148555710 CAGGCGATAGTCTCGTAGC 60 NA Rattus norvegicus 81 Barhl2 ENSRNOG00000002117 ENSRNOT00000002887 3 1 1 87 14 4363392 4364990 AAATGCCACGGAACAAAGG 59 4365041 4365059 CCTTTCGAGGTTTCTTGGC 59 NA Rattus norvegicus 81 Zc3h10 ENSRNOG00000040281 ENSRNOT00000061995 2 1 1 186 7 2970390 2971632 CTACCTCAGTCACCAAGAGTG 60 2970224 2970242 ACAGATGGCATCTGAGGTG 60 NA InUTR Rattus norvegicus 81 Zc3h10 ENSRNOG00000040281 ENSRNOT00000061995 3 1 1 186 7 2970390 2971631 TACCTCAGTCACCAAGAGTG 59 2970223 2970242 TACAGATGGCATCTGAGGTG 59 NA InUTR Rattus norvegicus 81 Suv420h1 ENSRNOG00000016790 ENSRNOT00000022486 3 1 1 80 1 219039236 219039256 CTCAGACAGTCAGTCTGTCAG 60 219039296 219046001 GACTTTCGGTTAGAAGTTGCA 59 NA Rattus norvegicus 81 Krt42 ENSRNOG00000034087 ENSRNOT00000046956 3 1 1 84 10 88170174 88170192 CCACAATCGACAATGCCAG 60 88170001 88170127 TCTGTCTCATACTTGGTGCG 60 NA Rattus norvegicus 81 LOC103690258 ENSRNOG00000052978 ENSRNOT00000081964 1 1 1 60 7 9136382 9136402 GGGCAACTTCATAATCATCCT 58 9136342 9136363 ATACATAGGAGTCTTGAGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129,ENSRNOT00000060832 2 2 2 80 20 5128578 5129040 TCCAGGACTACAATGTTGGG 60 5129083 5129101 ATGCTCCAGAAGGTAGCTG 59 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 1 3 3 84 9 44491555 44493589 CAGATAAAGTATTTCAGCCTAGACC 59 44493628 44493649 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627,ENSRNOT00000021740 2 2 2 80 3 120639368 120663092 ACTATAAGGTGGTGACCGA 57 120663136 120663154 CCAGAGACAACGAGATGAC 58 NA Rattus norvegicus 81 Sec23b ENSRNOG00000008411 ENSRNOT00000064723 1 1 1 80 3 138727312 138727333 TTGAAGACTCCTATTCGTTCCT 59 138727373 138727728 CTCATAATGCTTGGTTGCCT 59 NA Rattus norvegicus 81 Gnai3 ENSRNOG00000019465 ENSRNOT00000026710 3 1 1 82 2 210898972 210902284 GAATACACAGGTTCCAATACGT 59 210898911 210898930 GTGTCCTTTCTTCGGTTCAG 59 NA Rattus norvegicus 81 Lrp2bp ENSRNOG00000011178 ENSRNOT00000041617 1 1 1 80 16 49452871 49452889 CTCGCTATCTCAGTACGCT 59 49452132 49452830 TTAGCATGGCGGTAATAATCAG 59 NA Rattus norvegicus 81 Xirp1 ENSRNOG00000037085 ENSRNOT00000055888 1 1 1 147 8 128708266 128710968 AGAGGCAGAAGAAGGATGG 59 128708137 128708158 ACTTGGAGAAAGATTCTTTGGG 59 NA Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 3 1 1 82 1 65566943 65567606 CATGTTCATCCACTCTGGG 58 65567652 65567670 GTTTGAGCAGATAGTCGCG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp961 ENSRNOG00000049856 ENSRNOT00000074514 2 1 1 80 16 19542664 19544367 AGAAATCTGAGAGTCCAAGTG 58 19542604 19542623 TGACTGGACAACTGTTTCTG 58 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000058943 ENSRNOT00000079450 1 1 1 60 7 13553662 13553683 CCTATGAAGACTGTATTAGCCA 57 13553623 13553641 AAGTTGTCCAATTCTGCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab3 ENSRNOG00000042255 ENSRNOT00000008019 2 1 1 80 10 93324514 93332383 CTCTCAAACAGCATGTAAAGAG 58 93332424 93332442 GGTTCAGCATTTCTTTCCG 57 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295,ENSRNOT00000084429 1 2 2 80 8 116760055 116760074 CTTTGTAGTAGCAGCGACAG 59 116760117 116760228 ATGGTTTGCTTGATCCGAG 58 NA Rattus norvegicus 81 Wfdc16 ENSRNOG00000036777 ENSRNOT00000042234 2 1 1 61 3 161099010 161099028 CCTTCTGTGGCAATGTCTG 59 161098581 161098599 TTTACGGTTTGACTTTGCG 57 NA DesignNoJunction Rattus norvegicus 81 Tgfbr1 ENSRNOG00000050760 ENSRNOT00000073192 1 1 1 80 5 64569539 64569557 CCTTTCATTTCAGAGGGCA 58 64569600 64572314 CAGTGGTAAACCTGATCCAG 58 NA Rattus norvegicus 81 Chrnd ENSRNOG00000019527 ENSRNOT00000026504 3 1 1 80 9 94291776 94291875 CCTTTGGTAGGCAAGTTCC 59 94291919 94291937 GATGTTGAGCACGATGACG 59 NA Rattus norvegicus 81 Eif2a ENSRNOG00000013393 ENSRNOT00000018022 1 1 1 83 2 148739238 148739261 CCTAACCTACAACTTTATGACGTG 60 148739303 148739810 GGAAGGACACCAATTCTGC 59 NA Rattus norvegicus 81 RGD1563365 ENSRNOG00000008696 ENSRNOT00000011511 1 1 1 80 7 26476782 26476801 CAACTCTAAGCCTCATTCCA 57 26474447 26476740 TGAACCTGGTCTAACAAAGG 58 NA Rattus norvegicus 81 Il1rl2 ENSRNOG00000014683 ENSRNOT00000019880 1 1 1 80 9 47077985 47078003 CTGGCGAGTTAACAACACC 59 47078045 47078896 GACAGATTGGTTTCGATTCCT 59 NA Rattus norvegicus 81 Spns3 ENSRNOG00000015873 ENSRNOT00000041886 1 1 1 80 10 59098926 59099963 TTCATCTCCTACCAGTATTCCT 58 59098867 59098886 AATGGTGGAATAGCTTGCTG 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 2 1 2 167 7 26646839 26690122 CTTAGTCTTGCGTTCGAGC 59 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100361644 ENSRNOG00000029988 ENSRNOT00000046772 1 1 1 60 2 23260734 23260756 CAAGTTTATCAAGAAGAGGGTGG 60 23260696 23260714 CAGCTCCTCCCTCTTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348,ENSRNOT00000077275 3 2 2 118 19 22604859 22604882 CAGAAGATCTGTTTAACCAAGTCC 60 22603135 22604782 TTTATGGGACTGAGCTGCC 60 NA Rattus norvegicus 81 AABR07007703.1 ENSRNOG00000059441 ENSRNOT00000078413 1 1 1 80 2 25007231 25007252 AAGAAGGAGAAGGTGTCTTCTC 60 25007292 25011347 ATTCAAGGCCCAGTCTATCC 59 NA Rattus norvegicus 81 Map3k3 ENSRNOG00000061424 ENSRNOT00000088656 1 1 1 80 10 94342000 94343248 AACCAAGTCTCCTAGTGCTC 59 94343291 94343309 CATAAGTAGACCCTGCCGA 59 NA Rattus norvegicus 81 Zfp763 ENSRNOG00000057416 ENSRNOT00000081512 3 1 1 88 7 15300095 15301021 AATCTGCGAACTCAGACGA 59 15300025 15300044 ACATATCCTGGAATCCGGTG 59 NA Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327 3 1 2 94 20 46507083 46507101 ACTTCACTGGTGCTAAGCA 59 46507159 46518664 GTTTGAGGGTCTGCTTTGC 60 NA InUTR Rattus norvegicus 81 Bcl2a1 ENSRNOG00000047606 ENSRNOT00000039850 3 1 1 107 8 96551772 96551793 TGGATGTGGATACTTACAAGCA 60 96551861 96559284 TTGTGAAGCCATCTTCCCA 59 NA Rattus norvegicus 81 Nup107 ENSRNOG00000006541 ENSRNOT00000009203 2 1 1 80 7 60819402 60821390 CTTTCCATGGTGACTAACCT 57 60819341 60819359 CGTGTTTGTGTAGAACCCT 58 NA Rattus norvegicus 81 RGD1562914 ENSRNOG00000012022 ENSRNOT00000016127 2 1 1 123 8 55695194 55696307 TTCGTCTTTAGAGACTCCTGG 59 55695091 55695109 CTGACTCCAGTTGGGAGAG 59 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076803 1 1 3 87 20 47208715 47208733 TGTACGGAGCTCAAGATGG 59 47208646 47208664 CAACACCTCTCCCAGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 1 2 2 80 3 51602783 51602804 TAGAAGATTTCACTTTCCTCCG 58 51602013 51602744 CAAACTCTGTCACATATGCCA 59 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 2 1 1 60 3 143122554 143122575 CATTGACAATTGTCCATTGCAG 59 143122595 143123367 AATGTAAGTGCAGCGTACCT 60 NA DesignNoJunction Rattus norvegicus 81 AABR07042359.1 ENSRNOG00000051885 ENSRNOT00000089027 2 1 1 60 X 153490484 153490502 AGCTTCTCTGACTACCCTC 58 153490442 153490460 CAACTGTCTGCCTCATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgtb ENSRNOG00000011937 ENSRNOT00000016129 2 1 1 80 2 34199594 34208886 CGTTTATTATTGTAACAGGGCG 58 34208927 34208945 ATGGCTTTCTCACAGTCCT 59 NA Rattus norvegicus 81 LOC691033 ENSRNOG00000042535 ENSRNOT00000057619 2 1 1 80 2 155106899 155108946 GAAGGCCCTCTAGGTTCAG 59 155108990 155109008 AGATCGCAGTCGATTTGGA 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 2 2 2 81 3 43113699 43114556 GGACTATTCCAGGTTCCAGG 60 43113637 43113656 GAGATCGTAGAACTGCTGGA 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 3 2 2 81 3 43113698 43114554 ACTATTCCAGGTTCCAGGC 59 43113635 43113654 AGGAGATCGTAGAACTGCTG 59 NA Rattus norvegicus 81 Cox6a2 ENSRNOG00000019851 ENSRNOT00000026908 1 1 1 133 1 199624682 199624700 TTAAGGTCCTCAGTCGGAG 58 199624379 199624397 CATCCAGCAGTTAAGCGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910143 ENSRNOG00000050374 ENSRNOT00000075415 2 1 1 80 14 1570120 1573689 AGGAAACAATGGTTCAGCAC 59 1570059 1570077 ACAATGTACGTGGCAACTG 59 NA Rattus norvegicus 81 Ybx2 ENSRNOG00000017117 ENSRNOT00000023003 2 1 1 82 10 56551422 56551440 GAAACCGTCCCTACTTCCA 59 56551486 56551795 GATAGGTGCTGAGGTCTCC 59 NA Rattus norvegicus 81 Fam91a1 ENSRNOG00000008271 ENSRNOT00000011797 3 1 1 80 7 98327544 98327562 CTGCTTGTGTCTATGGCTC 58 98327604 98328736 AATAGCTGGTCCAATATGCTG 58 NA Rattus norvegicus 81 Mc1r ENSRNOG00000038193 ENSRNOT00000058145 1 1 1 60 19 56217344 56217367 CTCTTCATCACCTACTACAAACAC 59 56217385 56217404 CTAGGAAGAAAGTGACGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 3 2 2 126 10 56578180 56578291 GACGCCCATGAATATTAAGTACG 60 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000057673,ENSRNOT00000050005 1 3 3 80 14 83583311 83583331 CAAAGTGATGGTCATGAAGGA 58 83581730 83583269 CGCATCACTTTCACCTCAG 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000057673,ENSRNOT00000050005 2 3 3 80 14 83583310 83583331 CAAAGTGATGGTCATGAAGGAG 59 83581730 83583269 CGCATCACTTTCACCTCAG 59 NA Rattus norvegicus 81 Olr78 ENSRNOG00000015760 ENSRNOT00000021098 3 1 1 60 1 168238785 168238804 CTGACATCTACCTGCTTCTC 58 168238826 168238845 TTTGTCCTCACACTGTAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkaca ENSRNOG00000005257 ENSRNOT00000041717 3 1 1 80 19 25117383 25117714 TCTATCAGAGAAAGGTGGAAGC 60 25117751 25117773 CCTCATAGTCGTCAAAGTTACTC 59 NA Rattus norvegicus 81 Hsd17b13 ENSRNOG00000002212 ENSRNOT00000038188 1 1 1 80 14 7122514 7122532 AAACTCTGGCCACATTGTC 58 7122576 7124558 TTGCTGGAGCAATATGGGA 59 NA Rattus norvegicus 81 LOC100912338 ENSRNOG00000045753 ENSRNOT00000046129 2 1 1 60 2 198361067 198361085 AAGAAAGACGGCAAGAAGC 59 198361106 198361127 TGTACACATAGATGGAGTAGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eri1 ENSRNOG00000011448 ENSRNOT00000015239 1 1 1 80 16 60317458 60317476 CAGCAGTATGTGAGACCAG 58 60317517 60319425 TACCTGATCCTGAGTAATTCCA 58 NA Rattus norvegicus 81 Depdc1 ENSRNOG00000009503 ENSRNOT00000012667 2 1 1 80 2 264716258 264717045 AACAAATCAGAGGATCTTCCAC 59 264722227 264722248 ATTGGTGTCATTACATCTTGGC 59 NA Rattus norvegicus 81 AABR07043115.1 ENSRNOG00000047294 ENSRNOT00000074210 2 1 1 80 19 21965235 21965257 AGATTTCACCTCACATGCG 58 21965173 21965192 TTCCTCTTTCTCCACAACCT 59 NA Rattus norvegicus 81 RGD1562638 ENSRNOG00000022181 ENSRNOT00000039592 3 1 1 90 16 68586562 68588812 GGATTTCCCAGTTGGTGTG 59 68588866 68588884 AGGCATCTTCCTGAAAGGG 59 NA InUTR Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025343 3 1 2 87 8 128842015 128842033 GTACAGCATCTGCAAGAGC 59 128842082 128846960 CCTTCTCAATCTGGTCTTCTG 58 NA Rattus norvegicus 81 Pdk1 ENSRNOG00000001517 ENSRNOT00000002072 2 1 1 80 3 58545592 58547060 ACTGTTCAAGAACGCAATGAG 60 58547101 58547120 GTGACGTGAACTTGAATCGG 60 NA Rattus norvegicus 81 Trim59 ENSRNOG00000010515 ENSRNOT00000013987 1 1 1 83 2 165632552 165640657 AACAGACCAGGAAATGCAC 58 165632487 165632505 GGTAGTACACGAGGATCGT 58 NA InUTR Rattus norvegicus 81 Trim59 ENSRNOG00000010515 ENSRNOT00000013987 2 1 1 84 2 165632552 165640657 AACAGACCAGGAAATGCAC 58 165632486 165632504 TGGTAGTACACGAGGATCG 58 NA InUTR Rattus norvegicus 81 Ccdc63 ENSRNOG00000034266 ENSRNOT00000046604 1 1 1 80 12 39945976 39947698 AACAGATGGAGGAGAAACTGAG 60 39947739 39947757 GGGTCTTGCTCATTTCCCT 60 NA Rattus norvegicus 81 LOC681355 ENSRNOG00000039063 ENSRNOT00000059744 1 1 1 60 X 18489752 18489771 TGTAAAGAACCCTTGCTCAC 58 18489789 18489812 ATCTCGATCTATGAAGAATCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910070 ENSRNOG00000018534 ENSRNOT00000025068 3 1 1 81 9 44531129 44531820 CTGAGTTACTGTGGAGTCCG 60 44531067 44531086 TCATGGTGGGTTGGTATCTC 59 NA Rattus norvegicus 81 LOC100911519 ENSRNOG00000018710 ENSRNOT00000025290 1 1 1 80 1 214421851 214421869 GGGACCTCATGACTTCCTG 60 214421712 214421809 CATAAGCTCACATTCTGCTGG 60 NA Rattus norvegicus 81 RGD1564447 ENSRNOG00000032401 ENSRNOT00000049001 2 1 1 60 7 94777877 94777895 GGTGAAGAAACCTCATCGT 58 94777919 94777937 ATAGCGTCTGATTTCTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntng1 ENSRNOG00000031136 ENSRNOT00000066218 3 1 1 80 2 212746576 212746594 TAAGACTGGAACGACAGGG 59 212699490 212746533 CAGACATTAGGTTGACAGCC 59 NA Rattus norvegicus 81 Tox3 ENSRNOG00000028649 ENSRNOT00000029415 2 1 1 80 19 18162315 18162335 CCTTCCATCACAATCTCAAGG 59 18162377 18176387 GTGGCTCTGATCCATATGC 58 NA Rattus norvegicus 81 Rgs7bp ENSRNOG00000013389 ENSRNOT00000018058 3 1 1 84 2 35077584 35086868 AAATCAAGATGACAGCAGCC 59 35077519 35077539 ACAACATAACCCGAAGAACCT 60 NA Rattus norvegicus 81 Ptrf ENSRNOG00000019778 ENSRNOT00000026783 3 1 1 80 10 88873958 88873977 AGAAACTGGAGGTCAACGAG 60 88863307 88873915 GCAGCTTGACTTCATCCTG 59 NA Rattus norvegicus 81 Prps2 ENSRNOG00000004160 ENSRNOT00000005615 1 1 1 80 X 28467952 28467972 CAGTTGTTGTCACCAATACCA 59 28468011 28470301 TCATTGAAATGTCGATCACCTG 59 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111 2 1 2 80 3 167999016 167999617 TCAAGACACTAGTTTCGCC 58 167989557 167989576 GAGTAGTGGGTGAATTCTCG 58 NA Rattus norvegicus 81 Ube2q2 ENSRNOG00000014529 ENSRNOT00000019539 1 1 1 80 8 59743243 59743264 AGTACAAGCATCAGATAGACTC 57 59743305 59744792 ACTGAATAGATCCCTGCCT 57 NA Rattus norvegicus 81 Cobll1 ENSRNOG00000027016 ENSRNOT00000001607 1 1 1 80 3 51165322 51187503 CGACACGGATAAGAGTTCCT 59 51165261 51165281 GTTCCTACTGATGTACTGCCA 60 NA Rattus norvegicus 81 Cobll1 ENSRNOG00000027016 ENSRNOT00000001607 2 1 1 80 3 51211422 51211440 AAAGACATCGAACTCTCGG 57 51198912 51211378 GTCCATCATGGGCTTACTG 58 NA Rattus norvegicus 81 Ccdc60 ENSRNOG00000032684 ENSRNOT00000046882 3 1 1 80 12 46146661 46146680 AGTTAAACAAGTTCCAGCCA 58 46146722 46156380 TTTCGTATTCGTAGGTGGTC 58 NA Rattus norvegicus 81 Evc ENSRNOG00000007564 ENSRNOT00000010541 1 1 1 80 14 78230558 78232483 CATAGACAATATGGGAGCTTTCTG 60 78232521 78232540 GAGCTGGAACACTTAAGCTG 59 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 1 2 2 80 20 50224963 50234277 GAGAAAGATGTCTTAGAGTGGGT 60 50234317 50234335 AATGTTCTTCACGTTGCGG 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 3 2 2 80 20 50177664 50194468 GAACAGACAAAGGCTTTCG 57 50194509 50194530 GTATAGACCTCTGATTGGACAC 58 NA Rattus norvegicus 81 Odf3l1 ENSRNOG00000027109 ENSRNOT00000038347 3 1 1 80 8 61518349 61518369 TACATAGCCCATGACATCTCC 59 61517634 61518310 GTCAGTGATCCGTTTCTTAGTG 59 NA Rattus norvegicus 81 Syndig1 ENSRNOG00000031536 ENSRNOT00000068210 2 1 1 80 3 145129295 145129313 TCAGTGTCTTCTCCATGCT 58 145129356 145198047 CAGCTTTGTTTGTCTCATGG 58 NA Rattus norvegicus 81 Bloc1s1 ENSRNOG00000007784 ENSRNOT00000010380 3 1 1 94 7 3342816 3343310 CAGGCACTTAAGGAAATCGG 59 3342741 3342759 TTGTAGACGTACTCCAGCG 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 2 3 3 80 3 147803981 147808257 ACAAGACATCAGGCTTTGTG 59 147803920 147803939 ATATCAGGGCGTACTGTGAG 59 NA Rattus norvegicus 81 Fxr2 ENSRNOG00000011876 ENSRNOT00000016163 3 1 1 80 10 56256427 56256445 GAAGACAGGACTGTCATGG 58 56256488 56256597 TCTTGATTCATCTTCCAGGC 58 NA Rattus norvegicus 81 RGD1564173 ENSRNOG00000047496 ENSRNOT00000056621 3 1 1 60 X 142345045 142345064 AAAGAGGAAGTATGAAGCCC 57 142345086 142345105 TCTCATTTCACGTTGGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 3 3 3 87 5 154391238 154392157 ATTTCTATGTGGTGCTGGGT 59 154391170 154391188 CTGATTCTGTGTTTGGCCC 59 NA Rattus norvegicus 81 Hsd17b7 ENSRNOG00000002826 ENSRNOT00000003812 2 1 1 80 13 88300163 88303332 TTATCCTGATTCGGGAACTG 57 88300102 88300120 CATTTCGAGAAGACGTCCA 58 NA Rattus norvegicus 81 Cpq ENSRNOG00000005931 ENSRNOT00000008211 3 1 1 80 7 71833234 71880273 TTTCCATCTACAGTCCTCACAC 60 71880311 71880332 CTATTGTGATACAGGCTGTTGG 59 NA Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000028020 1 1 2 80 1 203534575 203534593 CATCGAGCAGATTTACCCA 57 203534637 203534896 AGCGTAGTTCCATCATTACTG 58 NA Rattus norvegicus 81 Trim62 ENSRNOG00000049496 ENSRNOT00000072908 3 1 1 84 5 147094529 147094805 CAACCACTTCAGGACTCAC 58 147094852 147094871 AGTAGTGGACACCACTACTG 59 NA Rattus norvegicus 81 Adra2a ENSRNOG00000047545 ENSRNOT00000071541 1 1 1 60 1 274766841 274766859 ATAGAGAAGAAGGGCGCTG 59 274766883 274766901 CGTTAATCTTGCAGCTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551265 ENSRNOG00000030551 ENSRNOT00000042834 1 1 1 85 8 99777426 99777448 CTCAGGTCATGAAGTCATAACTC 59 99777492 99779209 GGACTTCCATCTTCTGGAGG 60 NA Rattus norvegicus 81 Tmem106a ENSRNOG00000023628 ENSRNOT00000035523 1 1 1 80 10 89491511 89491886 GTGAATATCCAGGGTGCTC 58 89491928 89491948 GTCCACATATTCGAAGCTCTC 59 NA Rattus norvegicus 81 Tmem106a ENSRNOG00000023628 ENSRNOT00000035523 3 1 1 80 10 89491506 89491882 TCCTTGTGAATATCCAGGGT 58 89491923 89491943 CATATTCGAAGCTCTCGAAGG 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 1 2 2 80 10 89237654 89237674 TCCACTCAGACATGAATCTCC 59 89237716 89239682 TGTAAGTGGGACCATCCAG 59 NA Rattus norvegicus 81 Brd2 ENSRNOG00000000461 ENSRNOT00000080585 3 1 1 83 20 5265169 5265561 ATATTTACAACAAGCCCACGG 59 5265606 5265624 GCATCGATGCCACTTTCTG 60 NA InUTR Rattus norvegicus 81 Osbp2 ENSRNOG00000019645 ENSRNOT00000065501 1 1 1 80 14 84106444 84106462 ACTACCTGAAGGGCTACCA 60 84064358 84106401 CCATTTCACCCTGGTTTCTG 59 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 2 2 2 80 9 44476089 44476110 AGAGAATACCTACAGGAGACAG 58 44475237 44476051 GAAGTTATAGAGCTGATGGGTC 58 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939,ENSRNOT00000084454 1 2 2 80 1 46198029 46203072 ACAGCTCTACAGCATCTATGG 60 46203113 46203132 CATCTGCTTTAAGAGGCACG 59 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939,ENSRNOT00000084454 2 2 2 80 1 46197969 46197988 ATAACTCCAACCTAATGGGC 57 46198030 46203072 CCATAGATGCTGTAGAGCTG 58 NA Rattus norvegicus 81 Mir6330 ENSRNOG00000050956 ENSRNOT00000072980 1 1 1 60 8 113718182 113718204 GGGTCATTTCAGTACATGTACAC 60 113718144 113718163 TTACACATGTGTTGACCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myl4 ENSRNOG00000050675 ENSRNOT00000072480 1 1 1 100 10 92635220 92635514 AGCCTGAAGAGATGAATTCCA 59 92635576 92635594 GAAGTCCTCATAGGTGCCC 60 NA Rattus norvegicus 81 RGD1560784 ENSRNOG00000032522 ENSRNOT00000049864 2 1 1 60 X 14889717 14889736 GAAAGCCGCAACATAGACTG 60 14889676 14889696 GCGAATCCCTAAGTAAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nelfb ENSRNOG00000009377 ENSRNOT00000012978 2 1 1 80 3 2415804 2415823 CTGATGAATTTGCCCTGGAG 59 2415473 2415762 CATTGTCCTTCCTGGGAGAG 60 NA Rattus norvegicus 81 Col5a2 ENSRNOG00000003736 ENSRNOT00000005073 1 1 1 80 9 52115546 52117183 GGTGATCAAGGTGTTCCTG 58 52115185 52115204 TCTTTCTCCAGGATTCCCTC 59 NA Rattus norvegicus 81 Ptpn11 ENSRNOG00000030124 ENSRNOT00000046323 3 1 1 80 12 40923497 40923515 GAGTTAAGCAAGCTAGCCG 59 40923557 40930395 TTCCTGTTGCTGTAGAGTCTC 60 NA Rattus norvegicus 81 Med23 ENSRNOG00000013422 ENSRNOT00000032424 3 1 1 80 1 21568446 21570910 TTTGCCATACGATAAGGATCTG 58 21568387 21568406 ATATCCCTGGAGTAAGGCTG 58 NA Rattus norvegicus 81 LOC689065 ENSRNOG00000036641 ENSRNOT00000054848 2 1 1 108 1 219744617 219745332 GACAATACCAACAGCAGGTG 59 219744528 219744546 CTGTTGGTGTCCAACAAGG 59 NA Rattus norvegicus 81 Cck ENSRNOG00000019321 ENSRNOT00000026159 3 1 1 93 8 130125942 130127010 CATCCGAAGATATGAAGTGCG 59 130125869 130125887 GCTTCTACAGGGACTACCG 59 NA InUTR Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 1 1 1 60 14 72889366 72889386 GTGAAAGGCCAATTTCATGAG 58 72889408 72889701 TGCATAGGACTGTGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Pfdn5 ENSRNOG00000012985 ENSRNOT00000017794 1 1 1 80 7 143925359 143926966 ACTGACGAGTTCTATGTATGTCC 60 143927005 143927024 ACGTAGTAACCAGTTCCCAC 60 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 2 2 2 80 9 56111 56129 ATGGCAGAGCAAATGATCC 58 56170 57790 ATGAGCTCATCGTTACTAAACC 58 NA Rattus norvegicus 81 Dmrt3 ENSRNOG00000016284 ENSRNOT00000021792 2 1 1 80 1 243590316 243601262 TTGCTAAGCCAGATTTGACTG 59 243601303 243601322 CTTTGTCACTGAAGGACTCC 58 NA Rattus norvegicus 81 Asnsd1 ENSRNOG00000003942 ENSRNOT00000059233 1 1 1 80 9 53007360 53007380 GGTTTGCATCTAGAGGAATCG 59 53007421 53007651 TGAGAATCACCTTTGCACTG 59 NA Rattus norvegicus 81 Pla2g3 ENSRNOG00000025121 ENSRNOT00000029848 3 1 1 80 14 83726561 83726581 CCCTTGCAGTATAATTACGGC 59 83726622 83726882 CTGTTGAAACCTGGCATCAC 60 NA Rattus norvegicus 81 Has2 ENSRNOG00000004854 ENSRNOT00000006517 2 1 1 158 7 96442344 96453041 CGTGGATTATGTACAGGTGTG 59 96440943 96440961 CTGCTGAGGAAGGAGATCC 59 NA Rattus norvegicus 81 Proser3 ENSRNOG00000024625 ENSRNOT00000032363 1 1 1 80 1 88997491 88997511 CTTGAGCAGTCTCTACAAGGT 60 88997347 88997451 GACAGGAGTCTGAGTAGTGAG 59 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 3 2 2 60 14 85948311 85951510 ACAGGTAACCTGGATGGAG 58 85948269 85948289 GAAGGAATACATCCTCCAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 3 1 2 79 14 85312076 85312271 AGTAGGAGCATACGTTGGG 59 85312314 85312332 TCGTAGACCAGCACAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624,ENSRNOT00000046377 2 2 2 83 1 99948450 99948565 CCTGGATTGGGAATTACCTG 58 99948386 99948406 TCATTGTAGGCTTCGATACAC 58 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000082497 2 1 3 80 20 4893918 4894063 CACCTTTAGATGGGAGGCT 59 4893856 4893875 GCAATGATGGTCACAGTTCC 60 NA Rattus norvegicus 81 Nxpe2 ENSRNOG00000027847 ENSRNOT00000037353 2 1 1 80 8 60339659 60339680 CATGACAACCAAGAATAGTGAC 58 60337842 60339620 TCAACTCCTATGTTGAACCTC 58 NA Rattus norvegicus 81 Cand1 ENSRNOG00000007834 ENSRNOT00000010720 2 1 1 80 7 62140446 62151269 CTGTGAAATGTCTTGGTCCT 58 62140385 62140403 TGTTTGTACAGAGGGTGTC 57 NA Rattus norvegicus 81 Mrps9 ENSRNOG00000016201 ENSRNOT00000021899 1 1 1 80 9 49674670 49687595 CCAAAGCAAAGAGCAATCC 58 49687639 49687657 GTAGTACGACTGTTTGCCA 58 NA Rattus norvegicus 81 Fam83a ENSRNOG00000006251 ENSRNOT00000008330 2 1 1 87 7 97866830 97879700 ATCATACAGCTTCTCTTGGC 58 97879750 97879768 CTCATCAAACAGCTCCACC 59 NA Rattus norvegicus 81 Zfp628 ENSRNOG00000038622 ENSRNOT00000029136 2 1 1 122 1 72468085 72468104 ACTCAGAGTACCAACCTTCG 59 72467787 72467805 CACTGTAGTCTCAGCAGCA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07030603.1 ENSRNOG00000050188 ENSRNOT00000074809 3 1 1 60 10 95434665 95434684 CAATGGATGAAGTGCGAGAG 59 95434624 95434642 CCGATCTTCTTGTTGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 1 2 2 80 8 32209251 32211309 CAGATGAGGATGACAGATTGGA 60 32211350 32211368 GTCGTTCTGTACTGCTGGT 60 NA Rattus norvegicus 81 Hyal1 ENSRNOG00000015858 ENSRNOT00000021408 3 1 1 82 8 116334782 116334932 AAGTACCAAGGAGTCATGCC 60 116334977 116334995 CTGCACTGGTTACGTTCAG 59 NA Rattus norvegicus 81 Fcho2 ENSRNOG00000015334 ENSRNOT00000020692 3 1 1 80 2 28955533 28957043 TTCTCTACCCACTGAGAAAGG 59 28955473 28955493 GCTGAAGATGACTCAAGAGAC 59 NA Rattus norvegicus 81 Rmnd1 ENSRNOG00000019501 ENSRNOT00000060757 2 1 1 80 1 40958510 40958530 TGGGAAGAAAGTCAAACTGTC 59 40955454 40958469 AGGTTTATTCGATGCCTGAG 58 NA Rattus norvegicus 81 Zfp36l3 ENSRNOG00000029788 ENSRNOT00000050601 2 1 1 60 X 73475855 73475873 TGCCTCTCCAACTATGGTC 59 73475897 73475915 ATGGTTGGTGAAATCGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 1 2 2 80 1 127732027 127732047 TGCTAATTACATTCGCAGTGG 59 127732086 127738937 AACATCTTAGCAGACTCTAGCC 60 NA Rattus norvegicus 81 Eri2 ENSRNOG00000014673 ENSRNOT00000019747 3 1 1 80 1 189547214 189547233 GTTCAGCCTCAAGAACATCC 59 189546640 189547173 TCCTTCATCAACTTGAACCTG 58 NA Rattus norvegicus 81 Htt ENSRNOG00000011073 ENSRNOT00000058166 1 1 1 80 14 81181083 81182592 CAGTACAGCCTCTCGACAG 60 81181021 81181042 AGATGGTAGAAACTCCCAAGTG 60 NA Rattus norvegicus 81 Slc9a9 ENSRNOG00000008554 ENSRNOT00000011358 3 1 1 80 8 102919129 102919150 GATAAAGACATGACGAAGACAG 57 102919189 103019425 GATGGGTTTCAGGTATTTGTG 57 NA Rattus norvegicus 81 Ocstamp ENSRNOG00000019110 ENSRNOT00000025820 2 1 1 110 3 162075529 162076619 GTCAAATACGATGCCTCATATAAGG 60 162075443 162075461 CAACTCCCACTGGAAGGAG 60 NA Rattus norvegicus 81 Mapk8ip1 ENSRNOG00000058478 ENSRNOT00000079746 2 1 1 80 3 81303935 81303956 TGGTACTGAAGATGGATTCGAG 60 81302865 81303895 TGATATCATGGGTGAGCCAG 59 NA Rattus norvegicus 81 Frat2 ENSRNOG00000045543 ENSRNOT00000072055 2 1 1 107 1 261089967 261089985 TTCTCGGAGAATCCAGCAG 59 261089878 261089897 TTGATGAGGTTTCCGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbpl1 ENSRNOG00000011114 ENSRNOT00000014805 1 1 1 80 1 23999918 23999937 TTTGGCAGTCTGTAACATGC 59 23999980 24000091 GGTTCATAGCTGGCATGAG 58 NA Rattus norvegicus 81 Exosc7 ENSRNOG00000060337 ENSRNOT00000084725 2 1 1 80 8 132210937 132219199 CTTTGTTGACTGTTCAGCC 57 132219242 132219261 GTATTTGCAATCTCTGTGCC 58 NA Rattus norvegicus 81 Fam45a ENSRNOG00000010230 ENSRNOT00000013845 1 1 1 80 1 282198063 282202084 CAGGAGTTCACCAGGACTC 59 282202125 282202146 ATGAAGGTGCATGTAAGAATGC 60 NA Rattus norvegicus 81 Serpinf2 ENSRNOG00000003233 ENSRNOT00000004322 3 1 1 81 10 62266307 62268851 CCTGAGATACAGGTGGCTC 59 62266244 62266263 CGTTCCACCCAAAGTAAGTG 59 NA Rattus norvegicus 81 Ipo11 ENSRNOG00000039717 ENSRNOT00000072212 2 1 1 80 2 38013489 38014285 GTTATTGAAGGCGAGAGGT 57 38013427 38013447 ACTGGCATTCTGTAGTAAGAC 58 NA Rattus norvegicus 81 Trub1 ENSRNOG00000017321 ENSRNOT00000023309 2 1 1 80 1 278321838 278332196 GGTCCAAGAGGTATATCGC 57 278332240 278332258 TCTCCTCTGTTACCTTCCC 58 NA Rattus norvegicus 81 Fbxo32 ENSRNOG00000006738 ENSRNOT00000010361 1 1 1 80 7 98088533 98088554 CTTTCAACAGACTGGACTTCTC 59 98077921 98088492 CTATCAGCTCCAACAGCCT 59 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 2 2 2 80 7 98194921 98194939 AGTAAAGGACCAAAGGCTC 57 98189984 98194879 ATGTGGTAAACCTGGATAAGG 58 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 2 2 2 80 8 23145983 23146001 ACTTCATCATGTCCCTGGG 59 23145733 23145939 CAAAGGTCTCCTGGAACCT 59 NA Rattus norvegicus 81 LOC100909862 ENSRNOG00000046359 ENSRNOT00000007560 3 1 1 127 2 35498761 35503454 GAAAGGAAGAGATTTGAACAGAGG 60 35498657 35498680 TATTCCTAGGAAGAGGACAAAGAG 59 NA InUTR Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000090090 2 1 5 60 20 4420923 4420946 AGGGAAGATACCTTCTATGTTGTC 60 4420964 4420983 TGACAGACACATGACAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx4 ENSRNOG00000026686 ENSRNOT00000013035 2 1 1 80 2 44490564 44490583 AGATGGACCTTCTGGAAGAG 59 44485859 44490522 TCGCCAATATCTCTGTTTCC 58 NA Rattus norvegicus 81 Msi1 ENSRNOG00000001156 ENSRNOT00000001532 3 1 1 83 12 46916222 46917734 AGCCTAAGATGGTCACTCG 59 46916157 46916176 AATAGTGCTTCACGTCCTCC 60 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 3 3 3 86 9 50722285 50722306 GAATTTGACAGTCAGTTGTGGA 59 50722348 50723653 CAAAGAATACTGATGTGGATAGGC 60 NA Rattus norvegicus 81 Olr46 ENSRNOG00000018506 ENSRNOT00000024957 1 1 1 60 1 167759249 167759269 CTATGTTTATTGTGGTGCTGG 57 167759286 167759309 CGTAGGATGAAGATATAAGACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 2 2 2 80 9 61248321 61249834 CATAGAGGGATCATGACAGG 57 61248260 61248279 GGAGTCTTTACAGAGGATGG 57 NA Rattus norvegicus 81 RGD1563217 ENSRNOG00000036713 ENSRNOT00000047477 3 1 1 80 1 198266397 198266492 TTGTTAAGACAGGTTCCAGC 58 198266336 198266354 AAAGCAGGAGGAAGAAAGC 58 NA Rattus norvegicus 81 Dusp4 ENSRNOG00000011921 ENSRNOT00000016328 1 1 1 80 16 61081141 61081979 AATACATAGACGCAGTGAAGG 58 61081081 61081100 AGATGGTGGCTGATCTAGAG 58 NA Rattus norvegicus 81 Izumo1 ENSRNOG00000024678 ENSRNOT00000033278 1 1 1 80 1 101607169 101607522 GATTACAGTTTCTACAGGGTTTGG 60 101607561 101607579 CGTCTTGGTCAGGTAAGGT 59 NA Rattus norvegicus 81 RGD1304554 ENSRNOG00000042925 ENSRNOT00000067297 1 1 1 100 8 37015402 37016048 GTATGCAAACTGCTTTAGCG 58 37015321 37015339 TTCACCATCTTTGGCTGTG 58 NA Rattus norvegicus 81 Vps33b ENSRNOG00000013149 ENSRNOT00000017862 1 1 1 80 1 142076525 142076544 GGAAGAGGACAGTGAAACGA 60 142076585 142076808 GTCACAAAGTCCACATCTCTG 59 NA Rattus norvegicus 81 Rcn2 ENSRNOG00000015780 ENSRNOT00000021817 2 1 1 80 8 60710204 60710580 CTAGGTGTCCAGGAAGACG 59 60710621 60710642 CTTTATGATCGACTGCAATCGT 59 NA Rattus norvegicus 81 Twf2 ENSRNOG00000048915 ENSRNOT00000074683 1 1 1 81 8 114908553 114908571 TCTACTCCAGCTGCAAGAG 59 114908614 114908994 CCGATCTCAATCTTCTTAGCG 59 NA Rattus norvegicus 81 Trmt10b ENSRNOG00000012454 ENSRNOT00000016720 2 1 1 80 5 60854763 60854781 TTGGAAGCCAAACACTCAG 58 60854824 60856374 CCTACTCAGTTCCTTCTTGG 57 NA Rattus norvegicus 81 Prdm10 ENSRNOG00000007853 ENSRNOT00000010423 3 1 1 80 8 32465425 32466917 CATGATTTGTGGTGTGAGGAG 59 32466958 32466977 GTTAGGGATTGGATGCAAGG 59 NA Rattus norvegicus 81 Olr84 ENSRNOG00000030275 ENSRNOT00000048411 1 1 1 60 1 168342058 168342076 GAGGAATAGGTCTAGCCGT 58 168342099 168342118 AAGAAAGGGTGAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf4 ENSRNOG00000014777 ENSRNOT00000019910 2 1 1 81 5 78276257 78276275 TTGAAGGCCATACAGTCCG 60 78276318 78279044 GAACGGTCATAACAGGTTGTG 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000048341 ENSRNOT00000071278 2 1 1 84 8 38396581 38397230 GCTTCCTACAAGCTCTGAC 58 38397275 38397296 GCTTTACAGGTAGAGTATCCTG 58 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 1 2 2 80 5 78154293 78155316 TGACTAAGGTCGAAGAGTTACAG 60 78154235 78154254 TTGTTTCCATTGTGACCGAC 59 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 3 2 2 80 5 78155412 78157312 CCCACTTTCAAGGATCAGG 58 78155350 78155369 CTGCCATTCGAATTTCAGTG 58 NA Rattus norvegicus 81 Ccdc12 ENSRNOG00000020946 ENSRNOT00000028426 1 1 1 80 8 118975373 118975562 TCATAGAGGAAGTGGACCTG 58 118976553 118976573 CTAGCTTCTTAGCCACATCTC 58 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000058102 ENSRNOT00000074529 3 1 1 78 8 40707281 40707301 TGCTACTCCTCTGTCATAACC 59 40707479 40707498 TCATGCATTCAGCATGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Scaper ENSRNOG00000006864 ENSRNOT00000009169 3 1 1 80 8 60482737 60493760 AGAGAATACAGTTCACAGTGAG 58 60482678 60482699 CAGAAGTATGCACTGAATTGTC 58 NA Rattus norvegicus 81 Prrt1 ENSRNOG00000000433 ENSRNOT00000091188 2 1 1 104 20 4395019 4395038 CATCATCGCCATCTTCAAGG 59 4395246 4395264 ATGAAGGAGAAATTCCGGG 57 NA DesignNoJunction Rattus norvegicus 81 Fkbpl ENSRNOG00000000432 ENSRNOT00000000494 1 1 1 80 20 4411938 4411956 CCAACACCGTACTCAATGC 59 4411996 4412217 CAATTGTAGTTCAGACCTGAGAG 59 NA InUTR Rattus norvegicus 81 Zfp462 ENSRNOG00000032048 ENSRNOT00000047225 3 1 1 80 5 71752898 71752916 CATGTTTACCCGAGAGGAC 58 71752959 71756055 ATATGGCGATCCAAGTTGTG 59 NA Rattus norvegicus 81 Olr1330 ENSRNOG00000052448 ENSRNOT00000084315 1 1 1 60 8 43795452 43795471 GTGGTCCTCATTTACCTCAG 58 43795411 43795430 ACACTTGAACCACTGAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptk6 ENSRNOG00000012987 ENSRNOT00000017337 1 1 1 80 3 176700044 176700062 AGGAACGTTCTCGTTACTG 57 176699487 176700000 GTAGATGTCCTCCTTGACG 57 NA Rattus norvegicus 81 Nr0b2 ENSRNOG00000007229 ENSRNOT00000009683 1 1 1 146 5 151776564 151778788 TCCTCTTCAACCCAGATGTG 60 151778897 151778915 AAGCCATGAGGAGGATTCG 60 NA Rattus norvegicus 81 C4b ENSRNOG00000030729 ENSRNOT00000031704 2 1 1 80 20 4305110 4306165 GGCACCTTAAAGATCCTTCG 59 4305049 4305069 TGTCACTTCTATCCGAAGGTC 59 NA Rattus norvegicus 81 C4b ENSRNOG00000030729 ENSRNOT00000031704 3 1 1 80 20 4315507 4315525 TACGTTATCGGGTCTTTGC 58 4315366 4315464 CATGGGAGTTCTCTACTGTG 58 NA Rattus norvegicus 81 Nnt ENSRNOG00000026842 ENSRNOT00000033627 1 1 1 80 2 52254578 52259418 GATTTGATACAAGAGCTGCC 57 52254517 52254535 CAGACTCCTTCAAGTCCAC 58 NA Rattus norvegicus 81 Ccdc110 ENSRNOG00000045697 ENSRNOT00000074490 3 1 1 86 16 47160703 47162035 AGGATTTGCCTAACAAGACAC 59 47160637 47160657 CCATTGAATGGAGAGTCTTGG 59 NA Rattus norvegicus 81 Zfp445 ENSRNOG00000025554 ENSRNOT00000034690 1 1 1 80 8 131892193 131892490 TAGAACACCAGGAAACTTTGAC 59 131892134 131892153 GAGCTGAGTTCAAACATCCC 59 NA Rattus norvegicus 81 Cd24 ENSRNOG00000000321 ENSRNOT00000000352 1 1 1 89 20 48335675 48339154 CCCACGCAGATTTATTGCA 59 48339204 48339225 GGTAGCATTAGTTGGATTTGGG 60 NA Rattus norvegicus 81 Spata21 ENSRNOG00000009058 ENSRNOT00000012147 3 1 1 80 5 159636747 159636767 GTAGAGAACTTGGAAGTCCCA 59 159636807 159637349 CAGATTGGCAGCATAGTTCTG 60 NA Rattus norvegicus 81 Ppapdc1b ENSRNOG00000015568 ENSRNOT00000020900 1 1 1 84 16 71123902 71123920 TCTGACCTGACTTGCACAG 60 71123239 71123856 CAAAGGCAAAGGAAGAGTGTC 60 NA Rattus norvegicus 81 Aknad1 ENSRNOG00000028025 ENSRNOT00000033443 1 1 1 80 2 211572466 211575722 GACTGGCCTCTCAGTTCTG 60 211575764 211575784 CGCCTCACATTTGTTACTCTG 60 NA Rattus norvegicus 81 Nkx6-3 ENSRNOG00000018147 ENSRNOT00000024532 1 1 1 86 16 73667429 73667447 AGACCAAGTACTTGGCTGG 59 73666271 73667379 TCTGGAACCACACCTTGAC 60 NA Rattus norvegicus 81 AABR07044933.1 ENSRNOG00000026813 ENSRNOT00000031053 2 1 1 60 20 27129523 27129543 ACGGTTGTGATTTCTTTCCTG 59 27129565 27129583 TTGTCTGTCCTCAACACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anp32b ENSRNOG00000009266 ENSRNOT00000012478 1 1 1 80 5 62093390 62093411 AAGAAGAGTTTGGACATGATGG 59 62093450 62094204 TTTCTTCCTCCTCTTCATCCT 58 NA Rattus norvegicus 81 Lpar1 ENSRNOG00000013656 ENSRNOT00000044348 3 1 1 83 5 75603509 75603527 ATAGTTCTGGACCCAGGAG 58 75559375 75603462 AGACAATAAAGGCACCCAG 57 NA Rattus norvegicus 81 RGD1564597 ENSRNOG00000031703 ENSRNOT00000040710 1 1 1 60 8 108260902 108260920 GTCCAAATGCAAAGTTCGG 58 108260860 108260881 GTAAGTAGCTTTGTCAAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Metap1d ENSRNOG00000061587 ENSRNOT00000084797 1 1 1 80 3 58150831 58157935 AACACAATCAGCCACATAACTC 59 58157974 58157994 AAAGTACGATCCTATCCCGTG 60 NA Rattus norvegicus 81 Ascc3 ENSRNOG00000037604 ENSRNOT00000057016 3 1 1 80 20 55425278 55425301 GCTTTAGAGTTGATAGCTTTCCTG 60 55425339 55454027 GTTCTCCATCTCTTGCTCGT 60 NA Rattus norvegicus 81 LOC100360884 ENSRNOG00000000376 ENSRNOT00000000423 1 1 1 60 20 26534600 26534621 CTACTTCAAGAAAGTACCTCGT 58 26534641 26534660 CCAAACTCCCTTCTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl4 ENSRNOG00000000547 ENSRNOT00000000658 3 1 1 60 20 41100387 41100406 TGTCTTCATCAAAGTGTGGG 58 41100429 41100447 TTATTGCTGTCGTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1705 ENSRNOG00000048714 ENSRNOT00000071933 1 1 1 60 20 1022246 1022266 ATGTCCACATATTCTCCACAG 58 1022287 1022306 AAGACCTTAGACCTGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911034 ENSRNOG00000019736 ENSRNOT00000026820 1 1 1 80 3 152210891 152216660 CAACATAGCAATTAAGGGAGTGG 60 152210833 152210851 CACTTGTGTTCTGTCTGCG 60 NA Rattus norvegicus 81 Neurog3 ENSRNOG00000024413 ENSRNOT00000000661 3 1 1 67 20 31761892 31761910 TCCAAGTGTCCCAAGAGAC 59 31761941 31761959 ATTGGAACTGAGCACTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lman1l ENSRNOG00000019355 ENSRNOT00000026192 2 1 1 81 8 62388702 62389401 GCAAGAGATGAGGGAAGCA 60 62388639 62388659 AAAGTGATGTTTAGTGCCCAC 59 NA Rattus norvegicus 81 Padi6 ENSRNOG00000037079 ENSRNOT00000055867 1 1 1 80 5 159248755 159248986 GCTCATGACCAGTTGATCC 58 159248693 159248711 GGGCAGGAAGATGTAAGGT 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659,ENSRNOT00000015879 2 2 2 80 16 67552154 67552172 TGCATGTCCTGTAACTCCT 58 67552215 67564859 AACCACTTCCTGAAATGCAC 59 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566,ENSRNOT00000012915 1 2 2 84 5 61720957 61724858 CCTTACAGGCAAGATTCGG 58 61720891 61720909 TTCCATGTAGAGTCGGGTG 59 NA Rattus norvegicus 81 Olr1326 ENSRNOG00000052349 ENSRNOT00000082000 1 1 1 60 8 43733590 43733610 GCTAACAGTGAAGGACTAGAG 58 43733630 43733650 CAAAGACATAGAAGACCAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1326 ENSRNOG00000052349 ENSRNOT00000082000 2 1 1 60 8 43734295 43734318 GGTCCCGTGATACTTATTTATCTC 59 43734337 43734355 GGATCACAGAATCCAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem217 ENSRNOG00000046758 ENSRNOT00000071399 3 1 1 60 20 8202822 8202841 GCACCTCATCTTTGAAAGGA 58 8202781 8202799 AGAATGGACGTTATCCGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1694 ENSRNOG00000000747 ENSRNOT00000000974 1 1 1 60 20 847775 847794 ACAGGGACTTGGATTAGTGG 59 847734 847753 CTACAACAGTGAGAGTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362856 ENSRNOG00000050316 ENSRNOT00000071766 1 1 1 60 20 1098850 1098868 ATGGGATGCACAGTAGGTC 59 1098808 1098827 GTCCACAGAAGTTCAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vdac3 ENSRNOG00000019277 ENSRNOT00000026197 3 1 1 80 16 74303673 74305523 CAAACACAGGGAAGAAGAGTG 59 74305564 74305583 CTATGTCAACGTTACTGCCC 59 NA Rattus norvegicus 81 Grhpr ENSRNOG00000012794 ENSRNOT00000051445 2 1 1 80 5 60529053 60529071 ACTCATGAAGGTGTTCGTC 58 60529115 60530504 TCTACCTCACAGTCTGTGG 58 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 2 1 1 67 16 75428800 75428818 GTCTGTCTCCTTTGAAGGC 58 75428846 75429449 GCTTTAATGGCCATCCTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 1 2 2 80 16 62056684 62056702 CTCGTAGGGACTCCAAACC 60 62056746 62086665 TGTGAGCTCATATGGCTCC 59 NA Rattus norvegicus 81 Prkra ENSRNOG00000011195 ENSRNOT00000015624 2 1 1 80 3 63492328 63492346 AGACTACATCCAGCTGCTC 59 63489711 63492286 GCACTCAGCTCCTCTATATCC 60 NA Rattus norvegicus 81 Spata2 ENSRNOG00000009207 ENSRNOT00000012604 2 1 1 80 3 164232595 164233228 AGCATCAAGACCTACACGG 60 164232533 164232553 CTTTAGAATGGCTCGGATGTC 59 NA Rattus norvegicus 81 Extl1 ENSRNOG00000016776 ENSRNOT00000022522 3 1 1 81 5 152580021 152580039 AGACCCAGTTTCTGTGGAC 59 152579321 152579977 ATCCGGTCCTGAATGATCTC 59 NA Rattus norvegicus 81 Rrbp1 ENSRNOG00000005958 ENSRNOT00000055602 2 1 1 80 3 138062631 138062650 ACAGGAAGTCAAAGAGAAGG 57 138062441 138062590 TTTGAGACTATGTCCAAGGAG 57 NA Rattus norvegicus 81 Defb38 ENSRNOG00000032089 ENSRNOT00000050296 2 1 1 86 16 75058624 75061684 TCAACCAAGCTACTGATCAG 57 75061733 75061751 AAATAGACAACCATGGGCA 57 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 3 1 1 62 16 75400952 75401558 GAGATAGGAAGGCCAGTGAG 59 75401582 75401601 GGCATATTCTTTAGGTCCGC 59 NA DesignNoJunction Rattus norvegicus 81 Plekha2 ENSRNOG00000038365 ENSRNOT00000022097 3 1 1 80 16 71764442 71764462 TTTCTTCAAGCCAATGACCAG 59 71764503 71766945 CTTGGGTACAGTGATCTTGC 59 NA Rattus norvegicus 81 Gata5 ENSRNOG00000058983 ENSRNOT00000089971 1 1 1 86 3 175707266 175708634 GACCACCTTCGTACCTGAC 60 175707198 175707216 CACAGTGGTGTAGACAGGG 60 NA Rattus norvegicus 81 Gata5 ENSRNOG00000058983 ENSRNOT00000089971 2 1 1 87 3 175707266 175708634 GACCACCTTCGTACCTGAC 60 175707197 175707215 CCACAGTGGTGTAGACAGG 60 NA Rattus norvegicus 81 Rims4 ENSRNOG00000010868 ENSRNOT00000014498 2 1 1 96 3 160242026 160244157 AAGTCCTGCAGGTAATTGTG 58 160241949 160241967 GTCAAGTCCAGTTCCTCCA 59 NA Rattus norvegicus 81 Hook3 ENSRNOG00000014275 ENSRNOT00000019281 1 1 1 80 16 70793622 70793640 ATTGCCTTATTGCAGAGCC 59 70793682 70799302 CTGATTCACAAGCCTGTTCTC 59 NA Rattus norvegicus 81 Mfhas1 ENSRNOG00000011431 ENSRNOT00000015203 1 1 1 164 16 60205479 60205497 CAAATCCACACGCTTTCCC 60 60128248 60135491 AGAAAGTACGAAGGTACTTGGA 59 NA Rattus norvegicus 81 Tmco3 ENSRNOG00000019346 ENSRNOT00000026281 2 1 1 80 16 81579738 81579760 CAGAACAACCAGTATATCCTGAC 59 81578274 81579703 CACGATATCCTTTATGAAGTGGTG 60 NA Rattus norvegicus 81 Ctsz ENSRNOG00000050697 ENSRNOT00000072069 1 1 1 80 3 172537140 172537160 AGGAATCAGCATATCCCACAG 60 172532700 172537098 GATGTTGATGCGATCTGCC 60 NA Rattus norvegicus 81 Cox4i2 ENSRNOG00000007827 ENSRNOT00000010418 2 1 1 83 3 148241189 148241207 GAAGACAGTAATGGGCTGC 59 148241253 148245128 TTAGGGAACACATAGACCCG 59 NA Rattus norvegicus 81 Alg11 ENSRNOG00000012841 ENSRNOT00000017164 1 1 1 81 16 74858020 74859972 TGGGATTGGAGTTGTCGAG 59 74857957 74857975 GACGATGTCAAGCTTTGGG 59 NA Rattus norvegicus 81 Cars2 ENSRNOG00000014526 ENSRNOT00000019993 1 1 1 80 16 83288814 83288832 GTGCATAACAGCCTCACAG 59 83288876 83289078 CGGTCCACAGCTATACCAG 60 NA Rattus norvegicus 81 Sp5 ENSRNOG00000054086 ENSRNOT00000078819 2 1 1 129 3 56767854 56767872 TACCCTTACGAGTTCTCGC 59 56767965 56767983 GTAGCAGGTTGGAGTAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifb3 ENSRNOG00000013398 ENSRNOT00000055349 1 1 1 80 3 149414913 149415370 AAGCTCAATGAACACCTGGA 60 149415411 149415431 GACATCCACTACTGAATTGGC 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000079262,ENSRNOT00000018697 2 2 2 96 3 176810830 176810848 GAAGGAGCTATCTGTGCTG 58 176810502 176810771 CTGCTTCACTTCCATATCCC 58 NA Rattus norvegicus 81 LOC689713 ENSRNOG00000033703 ENSRNOT00000043188 3 1 1 80 16 84487973 84492455 TTGTCCTGGAGGAATCACAC 60 84492498 84492516 AACGAAGCCATTGATCTGC 59 NA Rattus norvegicus 81 Gapdh-ps2 ENSRNOG00000033057 ENSRNOT00000047750 1 1 1 60 16 25773775 25773796 ATGTTCCAGTATGACTCTACCC 59 25773817 25773835 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gapdh-ps2 ENSRNOG00000033057 ENSRNOT00000047750 3 1 1 60 16 25773782 25773800 AGTATGACTCTACCCACGG 58 25773824 25773842 ACCAGCTTCCCATTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd2 ENSRNOG00000013102 ENSRNOT00000017829 2 1 1 80 3 2621643 2622513 GACATGGACTGAACTTCAGG 58 2622555 2622574 TGTATGAACATGGCTACAGC 58 NA Rattus norvegicus 81 Dcun1d2 ENSRNOG00000019473 ENSRNOT00000026370 2 1 1 81 16 81611601 81612601 CTAACTACGATGAAGAAGGAGC 59 81612643 81612661 CTCCCTCCTGTGACTACTG 59 NA Rattus norvegicus 81 RGD1564807 ENSRNOG00000031728 ENSRNOT00000057349 3 1 1 60 16 86582788 86582806 TGGACGACTTCGAAAGGAC 60 86582746 86582766 CTGGAATAGCCACAGTATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahcy ENSRNOG00000017777 ENSRNOT00000024310 2 1 1 80 3 150592816 150592836 CTACAAGATGATGGCCAATGG 59 150592363 150592775 TTGTCAAACTTGCTCTTGGT 58 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360,ENSRNOT00000079394 3 2 2 80 3 79965308 79965574 ATACCAAGAAGTGTCGGGAG 59 79965247 79965265 GTTTGATGCTTTGTTGCCG 59 NA Rattus norvegicus 81 Cdca7 ENSRNOG00000001514 ENSRNOT00000002066 2 1 1 80 3 59156094 59156113 TGGAAACATCGTCATCCTCC 60 59156155 59159004 TGTTGAACTGCAGTCTTGTG 59 NA Rattus norvegicus 81 AABR07036436.1 ENSRNOG00000053151 ENSRNOT00000089144 1 1 1 81 12 43252249 43252653 CTGCAAGATTACACAACTTCAG 58 43252695 43252713 GAGCAGCCATCTTGTTCTC 59 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000077883 1 1 2 80 2 212580903 212582936 CTGGTCAGTGCTAAGTCCC 60 212582980 212582998 GAGAGCTCCCGCATATCTC 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 2 2 3 83 15 34862328 35032651 TGGAGCTGAGGAGATTATCG 59 35032697 35032715 TTCTCAGTGACGATGTCCA 58 NA Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 1 2 2 81 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395976 257395996 ATGTCAGTGACTGACATAGGT 59 NA Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 3 2 2 85 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395972 257395990 CACGATGTCAGTGACTGAC 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 1 2 5 90 X 22291377 22291395 CAGTAGTTCCCTGCGAGAC 60 22291918 22292523 AACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181 1 1 2 122 3 37939191 37947211 GTTCAATCACCAGGAGCAC 59 37938650 37938671 ACATTGCTTCCTATTGTAGGAG 58 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000046069 2 1 2 81 2 57209107 57209125 ATCAGCACCATCCGAAGAG 60 57210078 57210100 AAACACCCATTGCAGTTACAC 60 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000090705 3 1 2 92 2 248758679 248758767 GACTCTTCTGAATTGAGAACCA 58 248758285 248758305 TGGACGCATGTTATTTCTGTC 59 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917 3 1 3 80 2 188398819 188399003 GCCTCCTCAATACCAAACAG 59 188398201 188398222 GCAGATACAAGAGGGATAGGAG 60 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453 1 1 2 80 X 1766249 1768102 CACTGAGGATGACATCCGT 59 1766187 1766206 GAGGATTTGTTCCGCATCAG 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000015784 1 1 2 80 1 161995780 161995800 TCACCAGTTCATAGCTTCTGG 60 161997558 162001506 GCTTCTGCATAAGAGATGATTAGG 60 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000015784 2 1 2 81 1 161995779 161995799 GTCACCAGTTCATAGCTTCTG 59 161997558 162001506 GCTTCTGCATAAGAGATGATTAGG 60 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000082077 1 1 2 139 2 183534433 183535783 ATCTGACTGTTCCTGCAGG 59 183529495 183534335 CCGAGTACACTTATATGTGTTGAG 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000088131 2 1 2 80 2 170272925 170276260 AGGCTACATGGGACAAGAC 59 170272863 170272885 AGGAAAGGGAGTAAAGTATAGCG 60 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000024018 1 1 2 80 1 219174108 219174127 CGATAGCAAGATGCTGATGG 59 219174169 219176171 ACCTTAGGTCTGATGAGCAC 59 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 2 2 2 85 1 89099529 89099629 GATGAATGGGAAGTACGTGG 59 89099463 89099481 TCTTACGGACCACATCCAG 59 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 3 2 2 86 1 89099529 89099629 GATGAATGGGAAGTACGTGG 59 89099462 89099480 TTCTTACGGACCACATCCA 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076986 2 1 6 81 17 84358310 84426614 ACACCAGAGACACTACCCA 60 84358247 84358266 TTCACTTTGCTGCTTCAGAC 59 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857 2 1 2 94 X 13267519 13267538 GCTGTTATGATCTGGTGACC 59 13262848 13267462 CATGCCAATCAACTGGGAG 59 NA Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 1 1 1 60 X 57186416 57186435 AGAGCATGACAGGATCTGAG 59 57185879 57185900 CCACATAAACGAAATATGTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 1 1 2 81 6 96165576 96165594 CTACACTCTACAGGGACCA 57 96153235 96165169 AGCATTGAACCTGTCTTCTG 58 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849 1 1 2 102 2 196013918 196015827 CTACTCCCGTTTCTGTGAG 57 196015888 196015911 CTACTAACAGTAGTGGATGTAGAG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 2 3 7 80 11 46244235 46248741 CATTACATCTGTGCCTTTAGAG 57 46244176 46244196 TGTAGTTCCTCTTCACTAGGT 58 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000079432 2 1 3 168 5 22764943 22765422 AGAACACAGAGGCAAAGCA 60 22761630 22764814 CCTAGCTTTCCTAGAACTTCCT 59 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 1 2 2 81 1 243386255 243386917 CCGGTCTCTATGTATGTCCA 58 243386959 243386979 CCGTTCGAATCTTTATTCCCA 59 NA InUTR Rattus norvegicus 81 Ep400 ENSRNOG00000037483 ENSRNOT00000056735 2 1 2 87 12 51961618 51975373 ATCAATGATGAGCACCAAGC 59 51975423 51975441 CCTGTTGCCTCTTAAAGGG 58 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091 2 1 2 82 8 63414791 63414809 AAACGGAATGACTTGAGGC 59 63414853 63419553 ATTCTTGGTTTCTGAAGGACG 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 1 2 3 80 8 90932337 90934405 GTCTGAATGTGAATGGGAAAGAG 60 90932279 90932297 ACCAGCTTCTCTGTTCTCC 59 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000022251 1 1 2 80 17 38993243 38994442 GATTCAATCTTGCTCCTCAGG 59 38994483 38994502 GGTGCAGAGGATACCTTCTC 60 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 3 1 1 67 4 120157484 120157502 GAACGGACATGAACGTGTG 60 120159006 120159024 ACGATCTTGGGATACCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 1 2 2 80 1 83211630 83211649 TCAATCCTGAGCACTTCCTG 60 83211690 83236194 TACGCTTTCCTATGGAGAAGG 59 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 2 2 2 80 11 58834241 58844106 AAGGTCACTGTGAACTATCCA 59 58834181 58834199 TTTGAGGGAAGCTTGTCGT 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000084756 1 1 10 80 2 231243010 231255696 ACAACAGCAACACTATCCC 58 231242948 231242966 CTGAAGCCAAGGTGATCTG 58 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 1 2 2 82 1 100395182 100395202 CTGATACCAATGACAGGTGTC 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 2 2 2 82 18 33413700 33413719 CAGACAAGTTACAGCATCGA 58 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 2 5 7 80 1 215610683 215610842 TCTGAAGTGCAGGAACTCTG 60 215610880 215610903 CTTCACCTCCATGTCATATTTCTC 59 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 2 2 2 80 18 28381371 28381389 AAGGCACTTTGGTTTCAGG 59 28381433 28382545 GTTAGGAATCCTCAGCACC 58 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000077624 2 1 2 89 4 119915817 119915835 TTACTTCGAGACCAGTGCC 59 119913854 119915766 GTTTGTGCATGCTGTTTAAGG 59 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 1 2 2 80 8 21951995 21952013 GAGTCTGTGGAGAAACCTG 58 21950498 21951952 CCTGTCATCTTCCTGTTCAC 58 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000079585 2 1 2 80 18 37245787 37245806 GAGGAGGACATTGATACCCG 60 37096118 37245746 AGAGATAATGTCAGCTTCGGT 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 1 2 2 80 4 176586985 176587090 GAGCTTCAGGTGGTAGTGG 60 176586923 176586944 TGAATGATGGATGACAAACCTC 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660 1 1 2 101 17 14521288 14521306 GAGCAGCAAGCAGAATGAG 59 14521371 14521647 CATTAAGGCATGGCTGCTC 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000618 2 1 2 81 20 5975614 5975632 TGGATATTTGGTCCGTGGG 60 5975673 5983759 TGATCAATATGGTCTGTACCAGG 60 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000079864 3 1 2 100 6 1657446 1674822 CAGGAGAAGCACATCATGC 59 1674886 1674904 AAGGACCGATATCCGTAGG 58 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 2 2 2 80 15 48425582 48427702 TTCACAAGTATTACGCCTACCT 59 48425523 48425545 CACAGTTGATATACTCATCCACC 59 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 2 2 2 80 1 86981634 86981652 AAACACAGCTGGATGTGGA 60 86981691 86981843 TGGTAAGATAATACCCAGCTTCTC 60 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 2 2 3 112 10 77755422 77763104 ATTCCAGCGTTTCATGAACC 59 77765228 77765246 CAATGGCTGGAACGATGAG 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 1 2 3 111 10 77755795 77763104 TTCCAGCGTTTCATGAACC 59 77765228 77765246 CAATGGCTGGAACGATGAG 59 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672 1 1 2 80 4 71664396 71664415 TTGACAATGCTAACTGTCCA 58 71664457 71667538 TATCTGTCTCATCTCCACGA 57 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492 3 1 2 85 3 151359873 151359891 GTGGAGAGTGTCTTCAAGC 58 151357130 151359825 CATGTGAGGCTGTCAATGAG 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 1 4 4 80 6 8257523 8257541 CCAAGGTCTCAGATGAAGC 58 8257584 8260433 TCTGCATGATTTCTTCCACC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967 2 1 2 85 13 96112229 96141610 AACGTCTACGACATGTACTG 58 96141655 96141676 CTGCCATATACTTCAATTCCAG 57 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000012993 2 1 4 84 15 51915323 51915347 CACAGAGATGTTGGTCAATATTCTC 60 51904468 51915286 GCTTGAAATGTAGTGATCTTCCTC 60 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 2 2 2 104 1 177569843 177569863 TCATCTTATCAGACGAAGGCA 59 177651613 177654175 GACTAGACACCTGCTTCCT 58 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000087678,ENSRNOT00000012948 3 2 3 180 15 45545050 45550200 GTATGGATTCATCAACACCTGC 60 45524571 45535929 CATGGACACATCCAGAACCT 60 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 1 2 2 80 6 102357187 102363480 CTAAGTGGAAGTCATTTCAGTGAC 60 102357130 102357148 TAGCCGTCTGGCTATTGTC 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 1 1 1 127 3 155103569 155103587 GACAAACCCAAGATCACGG 59 155105764 155105783 AAGATGATGAGGAACAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078221 3 1 3 82 11 53545559 53562270 GTTGCACATTAGTTTCGTGG 58 53545496 53545515 CCAGAACAGGAGTATAGCCA 59 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 3 2 2 80 1 274330908 274333234 AGGAATTGCTAGATTGGCTC 58 274333276 274333295 GATGTAAACTGGCTTCCTCG 59 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 3 2 2 81 19 19689636 19689654 GAGCATGAGCAGATTGAGC 59 19689696 19690385 CAAATTCACACTGACAGTTTGC 59 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994 3 1 2 95 7 9826303 9826322 ACCTACTTGAACCTCTGTGG 59 9750423 9826051 GGCTGAGATGCTTTCATGTC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000083162 3 1 3 93 10 38894545 38905203 AAGGACAAGAAGAACAGATCAG 58 38905256 38905275 GTTCCACATTTGCTTTGGTC 58 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000052315 2 1 3 113 1 220855935 220855953 CTCCACAGTGAAGGACCTC 59 220856029 220857634 GCGACACTCATCTATGTCCA 60 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520 1 1 3 80 1 220857308 220857326 CATAACCTTCCTGGCTCCT 59 220857366 220857628 CTCATCTATGTCTACACATTCGG 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000051910 1 1 2 80 2 61409224 61413943 GAGAAGCCGTTGAATCCCT 60 61409162 61409182 GGAATCATGCTCTGCTTTGAG 60 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000067374 1 1 3 88 17 23116766 23136877 GAAGTATAAGAATCTTATGGCGAGG 59 23136923 23136941 TCAAGATGTCTCCCTTGCG 60 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 1 2 2 80 10 105216318 105216338 ATGAACTCATGCAGATGAGAC 58 105216177 105216276 TCTGAGTGATCAAGGCCTC 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 3 2 5 82 16 19727743 19727762 TAGTCCTGTCACTCGAAGTC 59 19727807 19730706 TATGCAAATCGCGGTACAG 58 NA Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 1 1 1 60 10 64175195 64175214 AAAGACTAAAGGATCGGGCA 59 64178039 64178057 ATTCTTCCGACCTCGACTG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 3 3 3 81 7 116196983 116197238 GAGACCTTGAGGCTCTACC 59 116196920 116196941 GGACATGATAGTTCTGAAGCAC 59 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 1 3 3 80 2 158091957 158091975 GAGCAGACAGAACAGTACC 58 158083024 158091913 ACATTTCTGAACCACCTCC 57 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000050547 1 1 2 80 13 90275114 90275133 TTATGCTCATTCCAGTGGTG 58 90275176 90276011 CATCATCTGCTTCCAGGAC 58 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 1 2 2 80 3 5720481 5720775 ACTTTCAGGAGATCAGAATGCT 60 5721198 5721217 TGTTGTATGTGCACGAAGTG 59 NA Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000052360 3 1 2 148 10 34519820 34534714 AAGGTACATGGCTACTTCCC 59 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc45a2 ENSRNOG00000018759 ENSRNOT00000025490 2 1 1 80 2 60995003 60995024 TCATGTCCAGCACATTATACAC 59 60995065 60998688 CCTGCTGCTTCTCTTTCTC 58 NA Rattus norvegicus 81 Jarid2 ENSRNOG00000045918 ENSRNOT00000070962 3 1 1 80 17 20194367 20196466 GAGATCGAGCAAGAGTACTG 58 20194306 20194325 ATTAGTGTCCACCTTTCCAC 58 NA Rattus norvegicus 81 Maats1 ENSRNOG00000002976 ENSRNOT00000040773 2 1 1 80 11 65008534 65008554 AAGCTAGTGAAGAAAGCAGAG 58 65008596 65010561 CACTGACAACTTGTCCTCG 59 NA Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 2 2 2 80 1 165675070 165676038 GATGATGCCATAGCATGGA 57 165667661 165667684 GTAGTCTTGATATGGACTGTAGAC 58 NA Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 3 2 2 80 18 47867588 47868096 CATCTTCACCCAGTTCACC 58 47868140 47868158 CTGTAGACTCGTCATCTGC 58 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284 3 1 2 81 10 103673811 103677405 GATAACAGGTATGACAGTGGTG 59 103673751 103673769 CTGCAGAGATGACTGGGAG 60 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 2 2 2 80 17 30691843 30691861 ATTGCCTACGCCTCTTCAG 60 30691240 30691802 CTCGCAAATTCATACTGAGAGG 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000040634 2 1 4 107 20 2058453 2059516 TAACCAGAGCGATAAAGATCCC 60 2059584 2059602 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000083976 1 1 2 81 12 13524286 13524304 ATTCCAATGCTGGTTACCC 58 13524347 13526700 CAGAATCATCTTCTGTCAGGA 57 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 1 2 2 80 1 200848258 201026423 CAAGATGAGATACAAGGGTCAG 58 200848199 200848217 CATTGCTCAATGGGTACCC 59 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352,ENSRNOT00000088802 3 2 2 121 X 37336862 37337307 CAACGGTATCGTTGGACCT 60 37337393 37338284 ATATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000042432 3 1 2 96 20 10364054 10364711 CAGATCCAATCACGAGACCA 60 10362781 10362799 CACCAAACACCATCAGCTG 60 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788 2 1 2 84 4 138269325 138441408 GCCTTGCAGATGACTACAC 59 138441454 138441474 TTCTCCTCAGAATCCAAAGGA 59 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968 2 1 2 80 10 94948278 94951748 CACAATCATCCACCCTAGAG 58 94954979 94955000 CCTGGGAGTATTAGCATAACAC 58 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968 3 1 2 80 10 94948240 94948262 GATTCCAACTCGTCGAAATACAG 60 94951748 94954962 CGAGCTAAGTTCTTTAGAACAGTC 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000089216 1 1 9 84 20 2077532 2078843 GCAGTACAAGGAATCTTCTATCC 59 2077470 2077488 GATAGTGACTGTCCCAGGG 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000046246 3 1 6 80 6 4311885 4314973 GAAGAGGAATGAAAGGTGGC 59 4307811 4307829 CTCTAGCATGGACCTTCCT 58 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000082489 2 1 2 92 3 7745140 7752844 CCTTTGGCAACTGTGAGTG 59 7745066 7745084 TGTTGTGTTTGCAGCTGAC 60 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558 1 1 2 80 8 64763803 64774606 TCGTAGATCAATGGGAAAGGG 60 64774645 64774666 GAAGGCAATCGGACTATAACAG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000029487 1 1 4 80 1 82338652 82338673 GACTATCAGTGTGAGATCTCCA 59 82331752 82338612 GGTCACTTCCCGTATTACGT 60 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045 3 1 2 81 8 55110322 55110340 TGGATCTAGAACGGGAGCT 60 55109064 55110277 AGGTCACTGCTCTCATCTG 59 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071863 1 1 2 120 6 132421374 132422184 ATTCAGTCCAGCCCTTCAG 59 132425352 132425370 TTTGGGCATGTACATGGTG 58 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580 1 1 2 80 1 219407346 219407364 TTTCCGGCACATCAATTGG 59 219407195 219407304 TCCTCTTCTGATTGCAGACTC 60 NA Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 3 2 2 87 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039668 195039686 GGGTCCTACTATGGACACC 59 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000041165 1 1 2 81 20 14584857 14584875 CTGAGTGATCACCAGACCC 60 14584920 14586548 CAAGCATTCCTTCAGGCAG 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 1 2 2 147 4 120412028 120412046 TTGAGGAGGTGAAGAGCAC 59 120412157 120415006 ATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 3 2 2 80 10 814391 814410 AAATTTCAGAAGCCCAAGCA 59 814451 816473 TGCATTATAGTCCACCTTCCC 60 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861,ENSRNOT00000042654 2 2 5 80 X 64273680 64275841 ACAGAAAGGTAGGGTTGGA 58 64273618 64273640 GACCATAATCTCTGAAGAACCTC 59 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 2 2 2 80 3 176093763 176093782 GATGATACGACCGATGAGGA 59 176093825 176095187 CATCCTGGACTGGAACAGG 60 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 2 2 2 80 5 167142239 167147196 CAAGAGAAGACAGGGAAGC 58 167147240 167147258 CCCATACTGGAAGGAGGAG 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 2 2 2 88 20 9618387 9618405 CTTTGTGATGGACGAGCAC 59 9618457 9621853 CCATAAAGCCCTGGAAGGA 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332,ENSRNOT00000017322 3 2 5 81 1 20902856 20902876 ACAGAGTTAATGGAGAGGTGC 60 20901261 20902813 TTTACCACTGGTGGCTCTG 60 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 1 2 2 80 4 33744173 33744191 TGATGGGATCACCTCAGTC 59 33743706 33744130 ATCATCGCATCATCAACCTG 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138 2 1 3 95 2 40554292 40554311 CGAATCAGAGAACATTCCGC 60 40554369 40704835 AAGTCCTGGAAACCAGTCG 60 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000064385 3 1 2 84 11 61253477 61253498 GATTAGCAATTCCTGTTCTCCA 59 61252350 61253434 CTCAGTCTGCTTTGTTCTTGG 60 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 1 2 2 80 X 62840332 62840350 CTCCTGAAGCTGATGACTG 58 62836933 62840289 TGATCTTGTCCTGTTTAGCC 58 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000024414 1 1 3 80 4 118496284 118500914 CTTGAGAAAGACCAGGAGC 58 118496222 118496245 GAAGTTACAGCAGATGTATAGAGG 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000048418 2 1 2 110 10 90257529 90257547 AGAATGCCAAGAAGTCGGA 59 90256636 90257455 CACGCATAATCTCATCCGG 59 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 1 2 2 80 12 6949649 6952745 GGATCTTCAGTGCATTTATCCT 58 6949590 6949608 GGAGTGTGACAATCTTCCG 58 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 1 2 2 80 5 76678461 76679556 CCAGATAGCAATGAACCACC 59 76678400 76678419 ACAGCTTGATGTTTGGACAG 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000016000 3 1 2 80 1 247133388 247133407 CAGTTGAGAATCATGCTCCC 59 247133447 247137567 GAAGAGAATCTGGATTCTGTGG 59 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 1 2 2 80 17 29646262 29646282 TTGTCTGTGTACAATCACAGG 58 29646322 29647502 TCATCAAAGTAGTGACACAGC 58 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 3 2 2 80 17 29646264 29646283 GTCTGTGTACAATCACAGGT 58 29646323 29647504 GTTCATCAAAGTAGTGACACAG 57 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 1 2 2 80 9 65994792 65997239 CTCAGTCTGGAACATTTGGG 59 65994731 65994750 GTAACACAACTTGCTGAACC 58 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 1 1 1 60 1 88457632 88457653 GTCTGAGAAGAACATCGATCTG 59 88461525 88461549 GTGTCCTTATCTGTGTATAAACTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 1 2 2 80 X 128198223 128198244 GAAATTACAGAGGAGATGACGA 58 128196291 128198182 GAAATAACCACCCTCAGCC 58 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169 3 1 3 86 6 76701300 76701318 GGAACGATGAGCTTCAGTC 58 76701366 76701619 TATATGGACCTGAGACAACGA 58 NA Rattus norvegicus 81 Ocel1 ENSRNOG00000032575 ENSRNOT00000051802,ENSRNOT00000092073 3 2 2 81 16 19767949 19768300 TACGAGCTTAAGTACCCACC 59 19768344 19768362 ACTCTTCGTACTGGTCCTG 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 2 1 2 111 2 235311996 235312015 TCTGCCAGTACAAGTGTAGC 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 3 2 2 80 9 78944022 78944828 CCTCAGTACCTTGATCTTCCA 59 78943962 78943982 GTTGACGATGTACTTTCTGCC 60 NA Rattus norvegicus 81 Fndc3c1 ENSRNOG00000002451 ENSRNOT00000078213 2 1 2 80 X 77529201 77529223 GCTATACTTCTGAGAGTACTTGC 59 77529098 77529166 CAGTATATGCTCCTTTATTCGAGG 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757 2 1 2 118 8 97277619 97277637 AAAGTGACTCGAGCTCTCG 60 97278178 97291661 GTAATGATGCTGCAGTCGAC 60 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013621 2 1 4 90 4 152490437 152492565 TCACTACTCCTCAGTCCGT 59 152490365 152490385 GGACGTTCATGAATAGTTGGG 59 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 1 2 2 80 10 82387078 82388437 TCAGGAAAGATGATGCCAG 57 82387016 82387035 CACTTAGTCCCTGGAAACTC 58 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 2 2 2 80 10 82390998 82391018 TAGCGTTCTTATCCAAGAACC 58 82390747 82390957 CTTGCTTCTTGATGAACCTG 57 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 1 2 2 80 11 67102107 67104169 CAGTGATCGCCAACTTCAG 59 67104212 67104231 AGCAGGTCAAATTTATGCCA 58 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000078667 3 1 3 83 18 31094091 31094110 AGCCTAGTCCTGCATTATGG 59 31089011 31089255 CTGCCTACATAAATAATGTAGGCTG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758 2 1 2 80 15 51452927 51454635 TCTATCCAGGCTGTGAACAG 59 51454675 51454696 CATTTGTCTTCCTCGATGTCTG 60 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000071977 1 1 2 85 6 42616523 42616541 GAGAATGGCACAGAGTGTG 59 42609402 42616475 TCAGGTCAACTCCATTAGCC 60 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000091545 3 1 3 88 2 113833223 113845508 GAGTGCTTCAGCTCTTGTG 59 113845555 113845578 GAATTTGTCACTTACAGGATCCTG 60 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623 1 1 2 80 9 14545246 14550062 GAACTGTTAAGTCAACGATTGG 58 14545187 14545208 CAAACACCTCTTCAAGAATTGC 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000004017 1 1 4 146 5 116705257 116705276 CAACCACATCAACAGAAGGC 60 116720811 116749858 GGTACCAGGACTGTGTCTG 59 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 2 2 2 80 X 78773178 78773197 TGGATGCGTCAAATCATCTC 59 78773240 78774492 CTGCAGAATGATATGGCCC 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000085644 2 1 3 113 7 2907652 2907670 GGACTTTGAGCACTTCCTG 59 2907370 2907576 GTTGCTGTCCCTTCTTTGTC 60 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679 1 1 2 80 20 12674072 12674091 GGTGAAGGAGAACTATGCAG 58 12674128 12674747 CACTTCTTATCTATACAGATCTGGG 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971 3 1 5 80 5 101697773 101697792 TTCAAAGAGGTTGAGAGTGC 58 101697834 101738240 GCTTCTTAGCAAGTTCAGCT 59 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000037446 2 1 2 80 4 7159300 7159323 TCCTGATTCTACCTTTGATACCAG 60 7159362 7159521 GACCAGAGTCTCAGAGCAC 60 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346 3 1 2 139 10 107522922 107523495 CATTCCAACTTACGGAGCG 59 107520430 107521499 AGACTCTACCATAACTGTCACTG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 1 3 3 161 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 3 4 4 80 10 1392276 1392296 ATCATGTTCTCCATGTGACCT 59 1385542 1392234 GAATGTTACCAAAGGCGCT 59 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000058906 2 1 2 83 5 88627240 88627259 AGACAGAAATGCAGAGACAC 58 88601664 88627096 CGATTTCGGTCTGTTTATGC 58 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094 1 1 2 81 9 49901065 49901083 CTGTGGATTTCTGGACCCA 59 49880164 49901022 GTCTACTGCGTAATCTGTCAC 59 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000082016 2 1 2 146 7 30315058 30315078 GTAAATCCTGACATGGTACCT 57 30312455 30314950 AATCATGTTGCTAGCCTGG 58 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 1 2 2 80 4 8141891 8143149 GGATATGCAAGGGAAGAGG 57 8143192 8143211 ATTTCATCCAAGGCTGTCTC 58 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 1 2 4 98 3 112229220 112251001 GACCTCCGGAAATTTGTGAG 59 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533,ENSRNOT00000082876 3 2 4 104 3 112242572 112251001 AGGCCAAAGGAAATTTGTGAG 60 112252332 112252350 AATGGCTGCAAGAAACCAG 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 2 3 4 82 10 67609238 67609256 TTGTCTGGAGTATCTGGGC 59 67609300 67611170 CTCTTGTTACTGTGATGGCTG 59 NA Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 1 1 1 92 9 12406763 12406784 CCAAGATAGCTCTGATCATCAC 59 12409451 12409469 CCTGAGTAGCTGTCAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299 2 1 2 107 14 110757984 110758002 TCCTTGGTTACTGCATGCT 59 110755100 110757913 GTTCATCCAGCAGTTTGGT 58 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000005905 3 1 2 80 6 48837333 48842720 AACTCAGGTAACAATCACCAC 58 48842761 48842780 TCATTCTGCTGCTCAATGAC 59 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846 1 1 2 82 1 166781361 166786253 CATTCTTTGGAAGATGGGAGAC 59 166786296 166786314 CATCTCCTGAACTCCAGGG 59 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036205 1 1 2 131 10 11824670 11824688 GATATCTGCTCCTGGGAGG 59 11824783 11824806 TTTCTCCTTTGCCCTCCTG 60 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189 1 1 2 80 10 11831898 11831917 CGTGATCAAGGATGATGGTG 59 11831958 11834746 TTCTGTAGCTGTAGCGTAGAG 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000067422 2 1 4 81 7 143124238 143124985 AGAAGGCAAGTGATGTGGA 59 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754 1 1 2 80 20 18932170 18932188 CAGACCAGGATCTGAAGGA 58 18932229 18937901 TACTTAGCTCTGAAATTGCCAG 59 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 2 2 2 80 13 44507344 44508911 TACCAACAGTTTGCATCTTACG 59 44508949 44508970 CAAGCCAAATGAATGCATACAC 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870 1 1 2 80 9 78334259 78341861 ACATTGCCTCTATAAAGGGTG 58 78334199 78334219 CATGGTCCTTAACATTTGGGT 59 NA Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 3 1 1 89 15 62521316 62521334 CCTGTGAAGGCTCAATTCC 59 62531545 62531563 GTCAACCTCCATGAAACGC 60 NA DesignNoJunction Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000078816 2 2 3 80 8 49014497 49014518 GCTTGAGAGGAGATATCATTCG 59 49010349 49014457 GAGCGGTAAACCTCTTTGAG 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000047303 1 1 3 80 8 49014492 49014513 AGAGGAGATATCATTCGCTCAC 60 49011751 49014451 GCAGCAGTTTCTCCATCTC 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 1 2 2 80 3 3363174 3363192 CACCAGAACACCCTTTCCT 60 3363232 3363348 GATGAGGTACACAATATCGTTGG 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464,ENSRNOT00000073556 2 2 2 106 9 14501676 14501694 ATACCTCCTTGCTGGATGC 60 14500324 14501609 GGTGTAGAGACTGAAGTGAGAG 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 2 4 5 87 2 30666640 30667390 ATCTAGCTCGGGAAGTCTG 58 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 3 1 1 61 5 77605853 77605871 GAACTGCAACAATCCAGCC 60 77605082 77605101 TAGAGACTGGGACTTGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Abcb7 ENSRNOG00000002790 ENSRNOT00000089809 1 1 3 162 X 75166721 75166827 GATGTAAATGTTGCAAGAGGAG 58 75164482 75164500 AAGTTCTGTGCTTCACCAC 58 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 2 2 2 80 7 23836660 23840822 ACCGATGACAGTATGGAAGG 59 23836599 23836617 AGAAGCCTCTTCCACACTC 59 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 3 2 2 80 15 8746522 8746541 GTAGGTGGATGTTCTCAGAC 58 8746583 8749386 CATAGGACAAACCAGATGCA 58 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 1 2 2 80 12 1717038 1720299 AGATGCCACCAATCCTTCC 60 1716976 1717000 GGCTTCCACTTTAAGATAATCTGAG 60 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000081029 1 1 3 81 8 107524066 107525333 TATACAAAGGCAGTGTGGG 57 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 1 2 2 80 X 82896316 82932975 AAAGAGCACTACAGGACCG 59 82896254 82896273 TGGTCATACCATTGTCCCAG 60 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000040701 3 1 2 93 2 60953049 60953067 GCTGCCAAGTAATGATCCT 58 60953121 60953304 GTGAATCCTACCTTCCTTAGTG 58 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135,ENSRNOT00000029340 2 2 3 80 2 177872900 177873565 AACGATGGAGAAGAGCTGG 60 177872838 177872856 TTCTGCTTTCCCATCTGGA 59 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830 3 1 2 99 6 28144140 28144158 GAAAGATGAGCTGGAGCAG 58 28144220 28150831 TTCTTCCTCCTTTAGCAGCT 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 3 2 2 80 1 89468690 89468708 CCAAAGGTTACATGCCTCC 59 89467513 89467650 TGGTATTGTCGTAGTAGAAGGG 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951 1 1 3 108 10 75089429 75089869 ATGTCACAGACGTGTTGAC 58 75089941 75089959 GTTCGATACTTGTCCTGCG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384 1 1 2 131 4 126618810 126619418 GCATATTGAAAGCAATGGTGTG 59 126618700 126618718 TTCTCTGTCACCTTCCAGG 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402 3 2 4 97 3 3168422 3178672 AGTATCTGACAGAAACCACAC 58 3178730 3178749 TCATCTGGACCTCTAAGTCC 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496 1 1 2 96 10 31340859 31340877 GATCTGTACAACGACAGCG 59 31339588 31340799 AAAGCACAGGTTCACTTGC 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000073502 1 3 5 80 1 257575476 257577352 CAATTGGGAAGTGATGCGT 59 257577395 257577414 ACTTTCCCACGAACACTAGG 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000016087 1 1 4 85 4 85597250 85597268 ATTTGCATCCTGCTGAGGA 59 85597312 85597482 GACCAGGGTAATAAATAGTTGCAG 60 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 2 2 2 81 3 177040812 177041755 AAAGTCCTATCGGAAGCTGG 60 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 2 2 2 83 6 107621812 107621830 GAGAAGCATTCTGCTGAGG 58 107621877 107622952 TACTGGAGTACCATCCAGC 58 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643 2 1 2 80 17 53666209 53673636 ACGATCTGGAGATGAAACCA 59 53666148 53666168 TCTTCCTCATCTTCTTCCTCC 59 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000064332 1 1 2 80 1 78715282 78715621 GCTACCTCGTATGAGCTCAG 60 78715802 78715820 GTCCATGGTTGCATTGCTC 60 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000037276 1 1 2 80 8 97568128 97568575 CTGGTCTCAGTATTCCACGT 59 97568618 97568636 ACCTCATTGAAGAGCTCGG 60 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 1 2 2 80 10 11886391 11886410 TCTGTGGATACACAAGTTGC 58 11885678 11886348 TAAGAGGGAACCTATGCCG 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000048404 3 1 3 81 1 150505661 150505679 TTTCAGGAGGGAAAGGCTG 60 150505722 150609154 GATCCATGTCTGTCATGTTGG 59 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045821 3 1 2 80 8 107230047 107231027 CTTTGAAGATGATGAAAGCCCT 59 107231067 107231086 TCACTTAATGCTACGTCCCA 59 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000091263 1 1 2 80 6 58523802 58540096 GCATATGATTCAGAAGTGCC 57 58540138 58540157 TTCTGTTCTGCTTGGATGAG 58 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 3 2 2 80 13 91732554 91735121 TTGAACGTGATGCAAGAGTG 59 91732493 91732513 GCATCTGATGTCAAAGGATCC 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334 1 1 2 80 1 75617195 75617868 GTCACTGGGAAACATGGGA 60 75617906 75617930 GTGTTGTTGAATATCCTGTACTCTG 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000090799 1 1 6 80 5 47987644 47987734 TCTATCCATCATTGTTGAGCTG 58 47987772 47987793 ATTATGTCATCTTCCAGGTCTC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 3 5 8 84 20 1963410 1966090 ACAAGTGGATTGGAGGGTC 59 1963344 1963367 GAGATAAAGAGTTTCTGAGACAGG 59 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000044143 3 1 3 94 3 93663854 93663872 TCATGGACCTTATCCCAGC 59 93661930 93663796 CTTTGCTGCTTCATCCGAC 60 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000086745 3 2 3 80 3 93663246 93663264 GAGATCGAGCTACCCTCAG 59 93662517 93663204 CACATCATTGAACAGCTTCAC 58 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646 3 3 5 93 4 140268538 140272582 CTTGGGCTTGGTTGATGAC 59 140272636 140362487 TAGCTTAAAGAGGCAGTCTCTG 60 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527 2 1 2 80 3 8915128 8919289 CCCAACACTCCCTATGAGTG 60 8915067 8915086 ACCTTCATCAGTGTCTTCCC 60 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000049482 1 1 2 84 X 116764986 116765154 GGAAGAGAATAATGTGATGAGACAC 60 116758284 116758304 GTGGCTAATGACTGTTGTGTC 60 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000049482 3 1 2 90 X 116764986 116765154 GGAAGAGAATAATGTGATGAGACAC 60 116758278 116758297 AGGAGAGTGGCTAATGACTG 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 2 4 4 80 1 262914458 262914476 AAGTACACATACCCTGCCC 59 262914518 262914661 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504 1 1 2 119 8 115151733 115152930 TTGATCTGCCAGGTCTTGG 60 115153013 115153031 CAACTAGGGATCCCAGCTC 59 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000064252 2 1 2 81 8 115152512 115152995 AGGGTCAACTTCCTAGCTG 59 115153038 115153058 ACATGCCACTTAATGATGGAC 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 2 3 3 108 13 48801362 48804630 ATACGCTCTTCCAGTTCCC 59 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439 3 1 3 85 11 70401434 70401452 CTTCAACATGGGAGGAGAC 58 70399523 70401386 AGAGAAACCACGAGATACCA 58 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 3 3 3 80 7 99158276 99171082 ATTCCTTCATGCAGCTTCG 59 99171126 99171144 CACATAGCATGACCACAGG 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000042594 1 2 3 80 6 107281622 107283829 GTCTCCTGTGTTTACAACTAATGG 60 107281565 107281583 GGTGCTAGAGCAGTACTGG 60 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 3 2 4 100 14 85876550 85876569 GTGAAAGTTCTCAGCTGTCG 59 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000045087 3 1 2 81 8 113960238 113960259 CACAACAATGACTTTCACTTGC 59 113957481 113960197 AACACAGACTGCAAACTGAG 59 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089091 3 1 3 82 1 149154672 149154691 GTACTTACGGGACCAATGTG 58 149152277 149154627 CCATAGTAAAGCTCAGGCC 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000059073 1 1 2 81 6 108024450 108026768 GAAAGCTAAAGATCAAGGAGACTG 60 108029795 108029813 TTGCCTCCTGTCATCATGG 60 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000088243 2 1 2 94 1 266117046 266117067 ACTTCAACAGTAACTTCTTCCC 58 266117122 266119104 ATAGGAGATGCCCAACAGG 59 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000002645 2 1 2 107 11 77474826 77474844 GAGTTTGTGCTGCTGACAC 60 77472108 77474757 GGTCTCATCTGTGACAATTCC 59 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438 2 1 2 80 20 27261105 27261124 TTGTTCAAGAGGCTGGAGAG 60 27260958 27261066 GGACATAATCTTCCTGTTCATCC 59 NA Rattus norvegicus 81 Hdgfrp2 ENSRNOG00000049142 ENSRNOT00000073011,ENSRNOT00000081441 3 2 2 80 9 10973767 10974007 GTTGACAACCCAGATGTGAG 59 10973706 10973727 CTGAAGGATCTGAGAGGTTACC 60 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572 1 1 3 83 X 104895076 104895769 GAGTTCAAGTGCCAATGCA 59 104895816 104895834 AAAGACCACGAGGAGTTGG 60 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000070975 1 1 2 80 10 109618711 109618731 TTATCATGATCCAAGGGACTG 57 109618773 109618793 CTATGTCCTCTGCCTTGTG 58 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000080485 2 1 2 81 3 150380385 150380403 CATCAACATGGCTGGAGAG 58 150380446 150382546 ATCAAACAGCCTGTATATGGC 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 3 2 2 80 13 75203337 75203357 GACGGAAATCTTCGAGTACTG 59 75203396 75205261 TAAAGGAGCTTATACACCTGGA 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000041365 3 1 4 81 12 5685266 5685289 TCAATGACCATCACACCCT 59 5685203 5685221 TGTATGCACCAGTTTCCAC 58 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 2 2 2 81 18 56639043 56639756 CTTGTGTCAAGGTGGATGG 59 56638980 56639000 TTATGCAGTTCTGTACAAGGC 59 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 3 2 2 89 10 74098623 74098647 CATATTTGGATCCACCTAATGAGAG 59 74097083 74098576 TCACATGACCACTCCTGTC 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000013333 3 1 3 80 15 60743015 60743036 GACCCTTACATTCCTCATCC 58 60742954 60742974 CCGTGTATTCCTTCTTATGCT 58 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 1 2 3 80 15 60745331 60746563 CTCTAAATCAGAGTCACCATTCAG 59 60745274 60745295 TGAAATCAATTCTGAGTCCTGG 59 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 3 2 2 111 7 35125530 35125549 AGTTCAGAATGGAGCAACTG 58 35125621 35126478 AGCCTTATATCATTTGCCCTG 58 NA InUTR Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 1 2 2 124 14 86479835 86479956 AAGCCTGTCTGGTATGCTG 60 86480043 86480062 AATTTCTTGAAGGCGTCCAG 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210 2 1 3 80 13 76444765 76454206 TCAAAGTGCAGAGTATCGTG 58 76444704 76444722 CACATGACTGGATGCAGTG 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968 3 1 2 80 5 163212991 163214875 AACGAAGACAGCCTTTCTG 58 163212929 163212947 CACTCACAGATTCGAGGAG 57 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191 3 1 3 83 10 12054850 12054868 CCTGAGCTACACGAGATCC 59 12054915 12055481 TCACGACAAGAAGGAAGGT 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000084004 2 1 3 80 10 12048913 12048933 CATTCGTACGAGAAGCCAC 59 12048975 12048995 TCATGGAATGTTCTGGAATCC 58 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 1 2 2 111 6 109097472 109103608 AAGTACACTCAGGCTGAGG 59 109097379 109097397 TAAAGCGGACCTTGGAGAC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 8 9 81 4 14159677 14159697 GAGGAAGTGGCAAAGAATAGC 59 14159736 14165609 CCTTGGCTAAATAACGAACTCTG 60 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000044257 3 1 2 82 1 100319724 100319742 TGACAAGGCAAAGAGACTC 57 100319785 100328074 CCTTGATGATGTAATCACTTGG 57 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034075 2 1 2 157 18 61788784 61788804 TGTGCTGTACGTGCTATCC 60 61787125 61787143 ACACTCACAGTGGTAGCTG 59 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442 2 1 3 80 1 192539603 192539621 TCCGGTATATCGACTGGGA 59 192539665 192574697 TGTCTCGCTTGTCTCTAGC 59 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 2 2 2 80 5 137672721 137672741 AACTGAGGTCCTTCAGAAGAG 59 137672783 137673034 TCAGAGAAGCCTTTCTGGT 58 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207 1 1 2 80 9 70432363 70432382 TCACAGGTGATCTGATTCAG 57 70404283 70432039 CATCAGAGTCTTCTTCAATTGG 57 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000086391 1 1 2 80 9 70405969 70432043 TCAACCAATTGAAGAAGATCCC 59 70405910 70405928 TCAGACTCAGCTTGTTCCT 58 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306 1 1 2 80 7 116960403 116960512 CTATTGATGAGACCATGATCCAC 59 116960345 116960363 CGTCAATCATCCTCTTGGC 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 2 2 6 80 4 154715187 154716003 GAAAGTTCACTCCCACCTG 58 154716044 154716065 ATTTCTTCCTTGCTCTATGGTC 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000087441 3 1 6 95 4 154706064 154706084 CATGGGTTTAACAGCATTCAC 58 154706141 154706798 GACCTGAACAGTGGTTCTG 58 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000076958,ENSRNOT00000071067 3 2 3 81 12 24606995 24612393 GTACATTCAGTATGTGCAACG 58 24606934 24606952 GTGCTCATCTGCTTCTGAC 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 2 3 3 80 10 84630212 84631884 GAGACCAACTTAACAGTTGCT 59 84630152 84630171 CCTTCTCTTCACTGAGAGGT 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 3 3 3 80 10 84630209 84631880 CCAACTTAACAGTTGCTGCT 59 84630148 84630167 TGGTCCTTCTCTTCACTGAG 59 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163 3 1 2 81 3 3414750 3433543 ATGGCCTAGACAACATCCC 59 3414687 3414705 ACAGGTGGCTTAATGTGCT 60 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 1 2 2 80 1 196858128 196858147 AAGTACTTCCAGTCTACCGC 59 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 2 2 2 81 1 196858969 196858987 GGAGCAGTTTATCCGAGAG 57 196858190 196858924 GCTTTGACCCTGGATAAGG 58 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 2 2 3 85 12 17753011 17753029 GAGGTTAGAGGAGCACCTG 59 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297 2 2 3 97 3 2512340 2512358 CCTACAAGCGACACAAGGA 60 2511009 2512281 ACCACTCTTTCTATCCTGCAG 60 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000077175 1 1 3 102 7 141346581 141346599 CCATGTGTTTGTGGAAGGG 59 141346665 141348669 ATACCGAGTGAAGACCTGG 59 NA Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 2 2 2 88 14 17143417 17145147 CGTTCCTACTCCAGGTCTG 59 17143347 17143365 CTGTGTCTGACGGAAGGAG 60 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762 2 1 2 80 1 245901180 245905472 TTACGGAATCAAGGTGCCT 59 245901118 245901137 GTTCATGGCATTTGAAAGCC 59 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307,ENSRNOT00000086502 2 2 2 89 15 14565577 14622256 CACTCATTGACTTTATCGTCAC 58 14565509 14565528 CTTTGACATCAGACAGTCCT 57 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346 2 1 4 80 17 72236232 72237360 AATATGGCTTGCTTGGGAC 58 72237402 72237422 AGATTAGACCCATAAGCCTCC 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000088814,ENSRNOT00000078345 1 2 4 107 7 122338009 122338027 CAATGAACTGCAGGAGCTG 59 122264230 122337938 AACTGCAGCACATTCTTCC 59 NA Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066 3 1 2 60 X 73617137 73617158 TAATGAACAAATCACCTGCCAC 60 73617178 73617197 TCATATAGGAGGCAGTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 1 2 2 80 X 124338917 124424517 GGATTTAAGGATATGAACCCTACTC 59 124338861 124338882 CGCATAGTAAGAAACAGTTGGA 59 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 1 2 2 80 7 143163543 143163564 GATCAAGGCTCAGTATGATGAC 59 143163286 143163502 ATCTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000088270 2 1 3 80 4 155561306 155623160 AACAAACAGAACGTGACCC 59 155561244 155561262 GGTGTTGTAGCCAAACTGG 59 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672 1 1 2 80 10 12990840 12990947 CTGAAGAAGGGCTGTAAGG 58 12990699 12990717 CAAGGCGTTGATTTCAGGA 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 1 3 3 80 17 66462653 66462673 TCTTTGAAATGTTGCTGGAGG 59 66462709 66463403 CTTGTAGATGTACCTTCACTATGAG 59 NA Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 2 2 2 80 5 33177436 33177456 CATGAATGGAAATCGGTCCAG 60 33176956 33177300 GAGTGATGTATCCCAGGGC 60 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036 3 1 2 87 15 103885129 103886107 AGGAGTTGCAAGGGTACTG 59 103885060 103885078 CACTTCACGATTGCCTTCG 60 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000074811 1 1 2 99 X 85462659 85462802 TTGACCAACATTCAGGGTC 58 85462863 85462883 AGAGCTCTATTCGTAGTTCCT 58 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000074811 2 1 2 100 X 85462659 85462802 TTGACCAACATTCAGGGTC 58 85462863 85462884 TAGAGCTCTATTCGTAGTTCCT 58 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000084970 2 1 2 105 19 37668761 37669156 AAGAGCAAATTTGACGCCG 60 37669225 37669243 CAGGGATCTGGTGTACCAC 60 NA Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510 1 1 2 165 18 59069646 59069664 TGGCATTGTTCCTCTTCGT 60 59059596 59067809 GCCAACTACTCGTTTGAAGTC 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000078701 1 1 6 108 19 33932881 33932899 CAAGTGTATGAGGAACGGC 59 33932969 33979337 ACTGCTCTGTACCTTAAACAC 58 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304 3 2 3 159 14 17548617 17551321 GGATGGATTTGCTGAGAGG 58 17551443 17552987 AGCATTGGTATCCTGTACCA 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000031149 1 1 4 80 12 14613491 14613513 TCCTGGGAGGTGTATAGGA 58 14613429 14613449 CAGTCCTTGGATCTTGTACTC 58 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407 1 1 2 100 4 81249094 81249113 GAGCCTGAAGAATTTGTGGT 59 81249176 81255874 CTTGTCAGCTCTGTGAACC 59 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 2 3 3 81 20 3149119 3149138 CTGTCTCTGCAATTGTCCTC 59 3149182 3149689 CTTCCTCTTTCACCTGCCT 59 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 2 2 2 80 12 18161176 18161196 CTGAGCTGATCTTCAATTTGG 57 18161237 18163389 TTTGGAAATCTGGGATGCTC 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 2 2 4 101 5 152685885 152685903 CAGAGGAGAAACTGACCCA 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 3 2 2 80 12 19623630 19625350 CCTAAAGCAGCTCTACACAG 58 19625392 19625411 CTCATCTCAATGAAGGCTGG 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 3 2 2 80 3 173867266 173868468 AACCAGGAAGCTTAACCAG 57 173868511 173868530 TCCACATAGTCACTGAAACG 58 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054 1 1 3 93 11 67642223 67642241 AACAAGATCCGGGTGAAGG 60 67642298 67642478 TCAGAAGAGCCTTCTTGCC 60 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 1 3 3 80 11 67635525 67635544 AGGAACACTGACTTGAAGAG 57 67635587 67637690 TCTGTAAGACTGGGTTGGA 58 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025731 3 1 4 106 17 70703391 70703409 ACACAGTCCTGAAACTGAC 57 70703583 70705169 CTTTGCATCCTCTGACCTC 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000088114 3 3 7 96 X 70637666 70641178 AGCATACAGGAACAGGGAG 59 70642436 70642455 GTGTCACTGGCTCATATGAC 59 NA Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 2 1 1 62 19 54607623 54607641 GGGATGAGCTCAAGTCCAG 60 54612062 54612080 TGAGCAGGATCACCATGAC 60 NA DesignNoJunction Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000080509 1 1 2 100 1 266381170 266401898 AGTACAAGGATAAGGAAGCCTG 60 266401959 266401977 ATAGTAGTGGCTGCAGCAC 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000085599 3 1 4 80 2 57863102 57867741 ATAACAATAAGGGACCGCC 57 57863040 57863059 GGACAAGTGTTCAACAATCC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725 2 1 3 80 7 27250456 27250482 GAGCTGTATCCAATGATCATGG 59 27262805 27262824 GTTCTCCACAAACTCTTCGT 58 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 2 3 3 69 4 82176911 82176930 GTACACAAGCCCTGTTTACC 59 82175283 82175301 GTGACTCCCATACACAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 1 3 3 80 10 47095600 47099559 GGTCTCGGCAAAGAATGTG 59 47099602 47099621 AAGAGCCTTCACATTTCGTC 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342,ENSRNOT00000024162 2 3 6 80 17 77176815 77176833 ACATTCACTCCTGAGGAGC 59 77176875 77177911 TAGCTTCATGGCTTCTTTCAG 58 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530 2 1 2 80 1 82099604 82099623 CAATGCCATTCTCATCCCTC 59 82098999 82099563 TGAGTTAAAGCTTGTGAGGAC 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000079217 1 1 2 60 18 54113121 54113142 AGGAAGACACATGTACTATTGG 58 54118152 54118171 CCCTTGATTCGTTGAGTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000066546 1 1 2 81 15 18779494 18783409 ACAGTCATGGTTACGGAAGAG 60 18779433 18779452 GAATCACCAAGTCAAAGGGC 60 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 1 2 2 117 3 164275575 164275593 GAAGATGCACATCCGAAGC 59 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 3 2 2 121 3 164275571 164275589 CTCTGAAGATGCACATCCG 58 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 2 2 2 80 4 121647306 121647324 GAATACGGCTGTTGTGGAC 59 121647366 121648079 GAAGGTGTGATACACTTCCAG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404 2 2 4 84 2 92566976 92569996 CAAGACTACTCCAAGGGCA 59 92570042 92570062 TTTCTTAAGTCCCGTGAACTG 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279 1 1 2 83 4 99504709 99504728 ACCACGAAGATAAACTGCAG 58 99503778 99503797 CTGGATTCACGGCTTTCAG 59 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000001437 1 1 2 88 12 13133209 13135876 AACAACTTCTGCAGAGGCA 60 13133139 13133157 GTCGTCTTCAGGATGGAGG 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 3 6 7 85 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920369 102920387 CCATGCAGAAGATCCAGTG 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000092180 1 1 7 80 1 102924211 102931704 GTGTATCTGTCAACATGAACAC 58 102931742 102931763 GATCTTTCTGGATGTTCCAGAG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000092180 3 1 7 81 1 102924211 102931704 GTGTATCTGTCAACATGAACAC 58 102931744 102931764 AGATCTTTCTGGATGTTCCAG 58 NA Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000082139 3 1 2 81 15 27724806 27726393 TGCTACAGGATTCTTTGGG 57 27724743 27724761 CTTGATACGACACTTCCGA 57 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000083429 1 1 10 88 7 117253869 117264769 AGCCACAGATGAACGAGAC 60 117253490 117253508 CACTGATGTGCCTTTGAGC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091840 3 1 10 90 7 117253868 117268109 CCTCAAAGATGAACGAGACC 58 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 1 4 4 80 7 142043311 142043439 TTGGACAAATATGGCTTGCG 60 142043250 142043270 CTCATATCCAAATGTGAGGGC 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859 3 1 3 80 9 90891937 90898150 GTCAGAAACGATTCCATTGTG 58 90898192 90898210 AGCTCCATCTTCAGGTAGC 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431 1 1 2 107 12 2213722 2213740 CAACCCAGAAGAATGCAGG 59 2213898 2214011 ATTGTGAGCACCTCTGGAG 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 3 2 3 81 13 78928337 78928355 TAGTCCCAAGTTCCTGGTG 59 78925972 78928294 CTCATCTACCAAGTCTCTGCA 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000003851 2 1 3 93 13 78929669 78934098 TTTCAAGAGGTAATGGAGAGTG 58 78929597 78929615 CACTCCGAACATTGAGCTC 59 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000081482 2 1 4 87 5 141130133 141130151 GAGGAGATCAACACCAAGG 58 141126151 141130085 CTGTAAGATCTGTCTTAGCCTG 58 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 3 2 2 80 10 14310670 14310690 AGACCAGTGACATATTTGGGT 59 14307363 14310628 GCAAGACATGATCCTTGGG 59 NA Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000077117 1 1 2 92 16 2724789 2725895 GCAACAAGATGAAGAAAGCC 58 2725950 2725968 TAGCAGAGGAAGACCTTGG 58 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000055542 3 1 2 80 4 178270931 178270949 AAAGCTCCTCTCCAAGGAC 59 178256481 178270890 TCAGGAGTCCCTTTGATTTCTC 60 NA Rattus norvegicus 81 Clstn2 ENSRNOG00000043085 ENSRNOT00000078760,ENSRNOT00000066731 1 2 2 80 8 105448369 105460896 GACAGAAATGGCAACATCAG 58 105448308 105448328 ATAAGCAGTTACCAGGATCTC 57 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000081770 2 1 3 85 9 10462252 10462270 ATTGATAATGGCAGCGTGG 59 10462180 10462203 CTTCTACCAGTGTGCTGTC 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 1 2 2 80 4 163393742 163395471 CACCCAACGAGTTAACACTG 59 163393681 163393701 CTTCTGTGTAGGCCTTAAAGC 59 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 3 2 2 106 17 76008900 76016081 GTTCTGAGGTCATGATGCT 57 76016151 76016169 AATATCACAGCTGGCAACC 58 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 1 2 2 80 2 197981408 197981426 TCTGAAGTTCATTGCCAGG 58 197975043 197981364 GTGAGGATTCTGTTCAGGG 58 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 3 3 3 80 11 71350980 71351152 GTATCTGAAGGTGGAGCAG 57 71350918 71350937 CAGTCGAACATCTCTAGCAC 58 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000059181 2 1 3 85 5 78516513 78520942 GAGAGGAAGAAACTTCACCC 58 78520990 78521008 AAGCTTCTATCCTGGGTGG 59 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000008256 3 1 2 83 10 86204826 86204845 CAGTGACAAGAATAGTGGGC 59 86204891 86208986 ATGTGAGGAGGACATGCTG 60 NA Rattus norvegicus 81 Slc33a1 ENSRNOG00000010023 ENSRNOT00000076880,ENSRNOT00000013392 3 2 2 80 2 154526561 154526580 CTCCTCATCAGCAAGTACAC 58 154526104 154526519 TCCAAGCAACAATCTGTAGG 58 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000039273 3 1 2 84 19 55210274 55221875 CATGAAAGGAAACTGCACGT 60 55221921 55221940 GGTGATGAGGGAGTAGTTCC 59 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 1 2 3 120 20 40667642 40701728 CACAGATTTACTCTGTGATGAGG 59 40701808 40701826 CTCTGGATGTCGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481 2 1 2 81 6 26573755 26574821 CTGCCATCTACAAGGTCCA 59 26574866 26574884 CACTGACCACACTCAGAGG 60 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000003494 3 1 2 88 X 71474776 71474794 AAAGAAGCAGCTCTGGAGG 60 71474845 71478296 AAATCAGGAGGCTTAGCCTG 60 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 3 1 1 60 15 28415133 28415151 GTACCAGGAGCTACAGGAG 59 28415497 28415518 ATCATTCTCCAAACCAGAAACC 59 NA DesignNoJunction Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 3 2 2 80 1 220929923 220931401 AACCAAGATGAAGGTGACCT 59 220929862 220929880 TAGGTGAAGGACTTCTGGC 59 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 2 2 2 80 11 71994467 71994488 ATGTCTTGAAGTTCTACGACTC 58 71994527 71995447 AAGGAAAGCCATCTTTCTCAG 58 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948 3 1 2 80 4 21893905 21897302 TCGTTTCCTGCTTCAACAG 58 21897346 21897364 TGTTTGCAGTGTTCCACTG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000086226 3 1 7 119 5 166060256 166060279 GGATTGATATGAAACAGGAGATGG 60 166053990 166060055 TATCAGAATCCGCGTCCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 2 6 7 81 5 166101437 166116420 AACTCGACCAGTATTATCAACC 58 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902 3 1 2 80 6 124398098 124398116 ACGTCAGAATTCAAGGCCA 60 124395543 124398057 CATCTCCAAAGAAGCATCAGTG 60 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 1 2 2 80 X 68352864 68352884 GGTATGAGAAAGAGACCAGGA 59 68347819 68352822 TTAAGTCCACAGGTCCCTG 59 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000078477 2 1 2 87 1 104636228 104696214 ATGAAGCTGATCTACACGGA 59 104696264 104696282 TCACATCTTGCTGGAGGTC 59 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000077707 3 1 2 81 1 47985725 47985743 GGAGTAGGACCGATTCCAG 59 47989494 47991232 CAAACACGTCAACATCTTCCT 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 3 3 10 82 9 95246249 95298733 CTGTCTCAGGAATTTGAAGCC 59 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000029757 1 1 2 106 15 48159468 48162441 ATTCCAGAGGTAGATGCCC 59 48162511 48162529 TTCTCAATACAGGCCTCGG 59 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487 2 1 2 80 15 48165462 48171445 CTAAGCAGCAACAAGGGTC 59 48171488 48171507 AGGACCTGAAGCTATTCCTC 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198,ENSRNOT00000012422 3 2 2 73 2 166681794 166681812 GCATCTAAGCTCACTCAGC 58 166655586 166655605 CTTCACACGCTTGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535 1 1 2 80 2 127708800 127708820 CCATCTTGCTAATAGGAGCTG 58 127707897 127708761 CTCTGTCATTATCCTGGATCCT 59 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983 3 1 2 89 1 220088595 220089503 CAGCCAACTAAAGAATCTGGG 59 220088526 220088544 GAGGACAGCTGTAGGAAGC 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000079727 1 1 2 80 3 103773766 103806654 AGAACCAGACCCGAATCAG 59 103820332 103820353 GCATTTCGAGCTTTCTTATGTC 59 NA Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 2 2 2 80 X 114992188 114992208 TTGTACAGGAATACAGATCGG 57 114992248 114998951 CACAATGCTTCTTAGCTTCTC 57 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 3 2 2 80 4 177037410 177037429 GAGAAGAGTTATCCCGACCC 59 177033475 177037369 ATGTAGATGATCTTGCACTGC 59 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 2 2 5 96 18 79413332 79424851 ACATGTACAAGGACTCACAC 58 79424910 79424928 AAGAAGTGGACTACTGGGT 58 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000091677 3 1 8 139 6 64808340 64810645 TCTCTGAAGGTGATTTCAGCT 59 64810746 64812926 GGAGTAGGTAGGCCTTCTG 59 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 1 2 2 100 5 58394293 58396482 AAGTTTCGAAACAAGGAGCC 59 58396545 58396563 ATCTCATCTTCGTTGGCCC 60 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858 1 1 2 152 15 4392275 4395189 GGAACTTGACCAGAATGCC 59 4390235 4392159 CCCAGAATCCTGAGGTGAG 59 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000013605 2 1 2 143 3 119024733 119024756 AGGAGGTTCTTCCCAAAGG 59 119024865 119024884 TGAACGTGACTTCAGACCTC 60 NA Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 2 1 1 89 6 126767171 126767189 AAACCAAGTCCTGACACCC 60 126768015 126768033 TTGCTCATCACATACGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000067070 1 1 2 84 1 15475039 15488396 TTCAGTCCCTGAAGGTGTG 59 15488444 15488462 CTGTCACAGCAGTAGACCT 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496 2 1 2 82 1 15484257 15488398 CAGAAGAACACAGTGTGCA 58 15488444 15488462 CTGTCACAGCAGTAGACCT 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000026587 3 1 2 80 1 199381339 199382253 CTTGCTGGAAAGATTCTGGT 58 199381278 199381297 TTGAGAGGGTTCTGTATCCA 58 NA Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 1 2 2 80 19 37583531 37583553 CTGGAGTTATGTAGAAGTCTTGG 58 37583592 37583715 TGTACCAGTAACACCTCCTC 59 NA Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 3 2 2 80 19 37583534 37583557 GAGTTATGTAGAAGTCTTGGACAG 59 37583594 37583718 TTCTGTACCAGTAACACCTCC 59 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 3 2 2 80 4 34602702 34610183 ATCGTGATAAAGACAGTGGGA 59 34610222 34610243 TGAACATGTAGCTGTTGTTTGG 60 NA Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 1 2 2 80 15 28639432 28639452 TTCAATCCAGACTACGTCGAG 60 28637471 28639393 GATTACAGGCTCACCATTATCC 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000056483 3 1 3 93 8 111749370 111752916 GCAAATTTGGAAGAACTGACTC 59 111749298 111749317 AGACGAGAGTCAGGATTAGC 59 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000057798 3 1 2 97 10 48438206 48438224 CTGTGAAGAGGAGGTTGCT 59 48438285 48443974 GACAGAGACCATGGAGCTG 60 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682 3 1 2 80 10 48452132 48453505 ACTTAGGACACTCAGGTGG 58 48453549 48453567 TCACTGGGATTCCACTCAG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000063902 3 1 4 80 13 80441091 80441211 CAAGCTTAGTGGTGCTTCC 59 80441029 80441049 GAGATTCATATTCCCACCGTG 59 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354 1 1 3 60 9 81562807 81562825 CCTCTGGTTATCCATGCCT 59 81562765 81562784 ACCATCTTCATACCCTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 3 2 2 84 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054406 14054426 TTTCTCTTGGAGTGAGGAGTG 60 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 1 3 3 80 6 127611491 127612384 TAAACAGGCAAACAAGGTCAG 59 127611431 127611454 TCAGGAGTGTCTTCAAGTTATAGG 60 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000003697 2 1 2 101 10 48035200 48037383 GAACCTAACAGAGAAACACGAG 59 48031547 48031565 CATGATGGTGGTGTTCACG 59 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 2 2 2 80 4 100299315 100299333 CTAAACTGGCTGAGCTACG 58 100299079 100299273 TATACTGCACAGTCACTTGAG 58 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 3 2 2 81 10 61706682 61707879 CCTCATCCAGATCTTGGACTC 60 61706621 61706643 GCGATAACAGAAATAGAAGTGGG 60 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796 2 1 2 80 1 241021913 241021934 TTGTGGCTGAGAAATAACAGAG 59 241010358 241021874 CTTCTTATTGTCACGAACCGT 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000080442 1 1 2 82 1 215215865 215217282 GTAAGGCTACCTCAGTCCG 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495 1 2 3 80 4 158242392 158242412 AGGGACAATTCTAGCCTACAC 59 158242449 158244184 CAGGTAGTTATTGATGACAGAACG 60 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 3 2 3 81 7 28741997 28742017 GTTTGCAACCACTGGATATCC 60 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000063875 2 1 2 83 20 30840343 30840361 GCTTTCATTGGTCTCGCTG 60 30839344 30840298 ATTGTAGGATAGGAGGTAGCG 59 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000072803 3 1 2 80 17 90205181 90217422 ACGTGCAGATAAATACTGAGG 58 90205121 90205140 TGTCCTCAGGAATCTTACGG 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000071930 1 1 3 80 4 183412737 183424210 GGAGGATATTTGAGCTTTGAACC 60 183412679 183412698 GCAGCCTTCTATACTTCGGT 60 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000081804 1 1 2 189 1 22255265 22269593 GATCATTAGCAGAGCTGCC 59 22252402 22253291 CCTTTGACGCTGTTCACTG 60 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000081804 3 1 2 191 1 22255266 22269595 CTGATCATTAGCAGAGCTGC 59 22252402 22253291 CCTTTGACGCTGTTCACTG 60 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000071076 3 1 2 81 11 84522582 84522602 GGAAGGAAACCTCAGAAAGGA 60 84527814 84533853 AGCTATGATACCTGTCACAGTC 60 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779 1 1 2 80 9 93677320 93677340 GTTGTTGCTCGTAATAGAGCC 60 93677380 93873181 TTTAACTCCCTTCCACTGGTC 60 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000057395 1 1 3 101 13 103253007 103253026 CGTACTGGTGCATATCAAGG 59 103249817 103251436 CAGGTAATAAGTTGTGCCGA 58 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000063977 3 1 2 80 19 38925005 38925024 AACTTGGAGCATGAAGACTC 58 38925064 38925090 CAAGTGAACACAATCTTTGGTC 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000088776 3 1 2 81 3 161417859 161417877 TGCAAAGTTGAACTCAGCC 59 161418171 161418190 TGTGTACACCCACATTTGC 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 2 2 2 80 8 112661832 112668502 CTCTATGAGCATGAAGTCGT 57 112668545 112668563 TTTCAAGGTCAGTAAGCGG 58 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 1 2 2 80 8 112661831 112670853 GCTCTATGAGCATGAAGTCG 59 112670896 112670914 TTCAAGGTCAGTAAGCGGA 59 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418 2 1 2 103 12 17506437 17506456 GAAGAAGCACCTTGAGACAC 59 17503987 17506371 AGAGGTCACCTGTGTAGGT 60 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925 2 1 3 94 1 143180917 143180936 ATTGGTTAACACCTTCCGTG 59 143179900 143180860 ACACATACCCTTTGGGAGG 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293 1 1 2 92 X 118200470 118200488 AAACTGCACAATGCAACCA 59 118200544 118200568 AAGAATAGCCAGGGACAGG 59 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196 3 1 3 80 2 62193174 62194514 TAAAGACAGAGCTCTGAAAGG 58 62194555 62194574 TTGACATTTCTGTCTCCTCG 58 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 1 2 3 81 14 25791727 25791745 TCCACCTCTTGTGTCTGTG 59 25791790 25859219 CTGGAGAAGGAGTTGTGCA 60 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 2 2 2 81 3 97892547 97895052 GGAATTCACGAAGGGTATGG 59 97895095 97895114 GTTGGAAGCTGACTGTACAG 59 NA Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 2 2 2 80 19 56026711 56027324 CTATGGCATTGTGTATCGAGC 59 56027366 56027384 TTCTCTTTGTCCATCCGCA 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000038264 3 1 2 109 13 103323458 103325830 TCAATGAAGGACTGGGCTC 59 103331907 103331925 CAATGCAACGTACCTTGGA 59 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 3 3 3 81 13 85398134 85398154 ACTCAAAGAAATCACCGAAGG 59 85397249 85398091 GACTGTCTCCTCTTTCCGT 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 1 2 2 80 3 114643049 114643070 TCTCAGTACAAGAACAAACGTC 59 114643110 114643688 TTCAGCCTTCACAGAAATCC 58 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000080114 1 1 3 92 14 22124664 22124682 CACTGTAGCCCAGTATGAG 57 22124738 22124758 CAAACACTCCCGATCTCTG 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000091506 3 1 2 82 1 227496073 227497255 TCAACCAAAGCCTTTGCAC 60 227496009 227496027 GTGACGAAGAAGAGACCGA 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 2 2 3 100 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865900 120867398 GGATATGTCCGATAAACAGCG 59 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 1 2 2 80 13 80473036 80474206 ACTACAGGACAAATCAGAAAGC 59 80474247 80474265 CACATTTGCCTTCGAAGCT 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000041473 3 1 4 80 7 51425412 51431823 CACAGAGCAGGTCATACCT 59 51425350 51425371 GTCTTGCTTGTCTAGATCTTGC 60 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 1 2 2 104 15 29208649 29208774 TTCTACTCGGAAGGACTCG 58 29208842 29208860 TTGTGGCTGAATAAGTGCA 58 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 2 2 2 81 16 24586316 24588410 AACTCAAACAGGACAGAGGA 59 24584351 24584370 TCATCACTGAAATCCAAGGC 58 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000033916 1 1 2 82 16 24582852 24582870 ATAACTTTCCACTGCCACC 58 24582783 24582802 AAGAACAGGATGGGAGGTC 59 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576 3 1 2 89 11 87058898 87063141 CACCATGAGCAGTTGTTCC 59 87063194 87063212 GAAATGGCCGTAGAAGGTC 58 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000026146 3 1 2 82 1 198099983 198100001 TGGTGCTGGCTCTATATCC 59 198100047 198100299 GTAGTCATCCTGAGGCCTC 59 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000029046 3 1 2 80 X 70377003 70377463 TTACCACTGTTGTTGGAGAG 58 70377505 70377524 GTTCAAAGTACTTTGCCACG 58 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 3 2 2 60 2 238696057 238696076 CACCTTTGACAAACACGGAG 60 238696097 238696117 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587 1 1 2 81 1 91696559 91699927 GAGACAGTCTTAAGTATTTGGCTC 59 91699967 91699985 CGAATGTTGCCTTTCAGGA 59 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587 2 1 2 103 1 91696565 91699931 GTCTTAAGTATTTGGCTCAGTG 57 91699995 91700013 CTTTACCCTTTCCTCCAGC 58 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798 1 1 2 80 7 67017918 67017937 CCCGAACAGAAATTCCAAGC 60 66982511 67017876 CCCTCAGACTCAGAGTTCTC 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138 1 1 2 80 1 1773344 1774170 TCCAAATAACCAGACCCTGTC 60 1774212 1774230 CTATAGGAAGGGCTGCCAG 59 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000081244 1 1 2 80 4 86466784 86606560 AAACGTCCCAGAGGTTACG 60 86466722 86466746 CCAGATTCTTCTTAAGATCTACCAC 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 1 2 3 80 5 159956689 159957079 AACAGTGAACAGGAGACCA 59 159956627 159956649 GAAGATCTCTGGTAAGTCAAAGG 59 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 3 2 2 80 1 89315325 89316133 CGGAATATGGGTGACTATGAG 58 89315265 89315283 AAACTGAACCAGCTCTGAG 57 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000084851 2 1 2 85 1 267439282 267439300 ATGACAGAGCAGGAGAACG 60 267437789 267438612 CCACGGTCTCCTTTAGGTC 60 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 2 2 2 80 1 78518366 78518390 GTCATTCCTTATGAAACAGATGAGG 60 78505961 78518330 CTTTGGTTTCTTGGTGTTCCT 59 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838 2 1 2 83 9 73947492 73958251 GCTATTAAGATCGAGTTCTCTAAGG 59 73943497 73943515 CTTGCATTCACCGGTTCTG 60 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000018097 2 1 2 114 9 73943532 73947759 GATTGCCGAATTCAAGGAGG 59 73943437 73943455 TGCATTTGTGGGATTGGTG 59 NA Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 3 1 1 61 4 149880293 149880311 GATACGCGCAGAATGTAGC 59 149881907 149881928 TGAAGAATCATACTTGTGGGCT 60 NA DesignNoJunction Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 3 2 2 80 3 71757928 71757949 GCACATTCTCATGCACTATCAG 60 71751003 71757168 CTCAGAATTGCTTGAACCTCTC 59 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656 3 1 2 89 6 126466347 126466366 GTACAAGGTGTTTGTGGTGG 59 126460616 126466295 GATTCACGATCTGAGGTGC 58 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000080829 2 1 2 99 6 126460615 126461725 GATGCCAGATCGTGAATCC 59 126455314 126455334 GAATACGCCCTCAATCTTGTC 59 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000080829 3 1 2 123 6 126460615 126461725 GATGCCAGATCGTGAATCC 59 126455290 126455308 GATAACCTCGTCACTTGGC 58 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195 3 1 2 159 5 159722270 159722289 ATGAAGTCTGGGTCCTTGAC 60 159722826 159724024 GATGACACCATAGCGTTGG 59 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 1 2 2 80 9 113587794 113587815 AAGATTATGGGAAGTACAGAGG 57 113584946 113587753 TTGGTCTCACACTCTTGTC 57 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 2 2 2 80 9 113587793 113587814 AGATTATGGGAAGTACAGAGGA 58 113584945 113587753 CTTGGTCTCACACTCTTGTC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021226 3 1 5 83 1 259479449 259481603 TACTCCCTCCAGACATGGA 59 259479384 259479402 TCTCCCTGTAGGAAGACGA 59 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000091712 2 1 2 140 19 55904859 55904877 AGCTGACTCCTGGATTCAG 59 55905728 55907874 TAGCAGTTCCAGCAATGAC 58 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000003526 2 1 2 81 17 90715783 90717879 GGCCAAGTCATTAAAGAAAGAC 58 90715723 90715744 GTCCTTACTCTCCTGAGTATCC 59 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 2 2 2 80 6 28331666 28332013 GCCAGAACTGTAAGAACTGC 59 28332055 28332074 AGCAGATGGTACAGTAGGAC 59 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000041380 2 1 2 89 18 77401939 77401957 TGGTACAGTTGTTCGGACC 60 77384132 77401886 TTCTGAGTGAGCGTTCCTG 60 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 3 2 2 80 13 51194015 51199861 AGACACAAAGAAGACCTGGA 59 51193954 51193972 ACGGATATAGGAAGCCAGC 59 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 1 1 1 60 X 124228614 124228633 CGAAGAAACTCAGTACCCAG 58 124232885 124232903 CACATTCATGAGCTCTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000090576 2 1 3 109 3 21850597 21850617 CTATCCTCACAGCATGGCA 60 21850505 21850523 TACAAAGCGCTTGTCATGG 59 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695 2 1 2 80 3 140023732 140023750 AACTGAAACGGGAGATGGT 59 140023794 140045046 GTCTCACCATGCTGTAGGT 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179 3 1 2 108 15 3465323 3465341 TGAAGAGTTCCCTGAGCAG 59 3459795 3465251 GTCATTGCCCTTGCTAGAC 59 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000064249 1 1 2 80 2 260527619 260527639 GGTGACTTTAGTGATTGGGTG 59 260527681 260531753 GATCTTCACCTCCAAGCCT 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000056439 3 1 3 80 9 111248316 111248336 CAACTTCTTTATGGAGCTGGG 59 111248379 111248403 TCTAGCACAGTCCTTGACTC 59 NA Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 2 1 1 64 1 81751481 81751499 TTAACCAGCAGGAGTTCGT 59 81751788 81751806 GACTTTCAGCTTCCCAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448 2 1 2 80 14 36172974 36172993 CTCCTCCATTTCTTCCACCT 59 36161994 36172936 GTACAGTTATTGGAATACCTGGTG 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000087320 1 1 3 91 13 51034757 51035432 GGAAGGAGCCTCAGAATGG 60 51035487 51035505 AGAACTTGTCTCCCAGAGC 59 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204 3 1 3 82 2 240627730 240642900 AAGGAACTTAGTGATTTGGCC 59 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 2 2 2 80 4 56857997 56859679 TTTGCTCAGTTGTACTCTACTC 58 56857938 56857956 AGCAGCCATGATAAAGAGG 57 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 3 2 2 80 4 56857997 56859678 TTGCTCAGTTGTACTCTACTC 57 56857937 56857956 TAGCAGCCATGATAAAGAGG 57 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000090402 2 1 3 81 1 87097353 87097372 GTCACCAACCTAAACAATGC 58 87095162 87097311 CTACAATATCCTCAGCATCCA 57 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 1 2 3 82 1 87096606 87097312 TTGGATGCTGAGGACATCG 60 87096542 87096560 AAGGCATGGTAGAAGCTGG 60 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 3 2 3 85 1 87097353 87097372 GTCACCAACCTAAACAATGC 58 87096599 87097305 GTGTTCACGATGTCCTCAG 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000029615 1 1 2 119 15 4155084 4155102 TGCTGCTCTATGCAGATCC 60 4155185 4160925 CAGTCAGGTGTCCTGAGTC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000016376 1 1 2 84 1 114317200 114317218 AGAGAAGGACCCTAAGAGC 58 114317265 114318684 TCTCACCATGTAAAGCTGTG 58 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000077935 2 1 2 97 6 96848893 96848911 TAAGAAAGAGCCCGATGCC 60 96848972 96849569 CAGTTTCCGTGTCATTGCC 60 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991 3 2 3 80 14 34481204 34481222 TCATTAACACAGCCAGCGA 60 34481264 34484610 CTGAGCTGAAAGCTGAAACTG 60 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 1 2 3 80 10 35872971 35872989 GGCTTTGTACGGCTTAGAG 58 35873033 35874540 CACGATTTCCAACCCTGAG 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 1 1 1 60 20 3791757 3791777 ATTTCCTGTACCTGTCCTTCC 60 3791713 3791734 GACATAGGTTTCCATGTTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 2 3 3 80 15 4040901 4041094 CAGCTGTATCAATGATGTGCC 60 4040841 4040859 GGACGGTCATAAGCATCCA 60 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 1 1 1 124 8 81963867 81963886 AAGGTATCCTCATTTGGGAC 57 81968457 81968476 GCTTGTTCTTCATCTTTGCT 57 NA DesignNoJunction Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 1 3 3 87 13 113840134 113840152 AGAAGGCAGTTCTCAGAGC 59 113833736 113840084 TAGACCACTGTTTGAGCGAG 60 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 1 2 2 80 9 100961269 100961290 CTTTGATGAAGTCATCCTGTCC 59 100961331 100963319 TGGCAAACCAGAATTCCAG 58 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417 1 1 2 109 18 11829195 11829213 ATACCATGGATCCTGGCAG 59 11828466 11829122 AAACTGCACCTTCTCACCA 60 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417 3 1 2 112 18 11829198 11829216 ACCATACCATGGATCCTGG 59 11828466 11829122 AAACTGCACCTTCTCACCA 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 3 1 2 82 4 161728494 161728983 CTTTCCCTCAAGGTAGGCC 60 161729028 161729047 GTCACAGTACTCTCGGTAGG 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000043182 1 1 3 165 15 35002230 35002421 AGAGGAGATTGTTGGTGGTG 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 3 2 3 104 9 118843849 118920879 GCCAGTACCTACAGGTTCC 60 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000090817 2 1 4 83 5 127613624 127613642 ATGGTCATTGTGCTCACCT 59 127613689 127614963 GCAGCAATTTAGTGCCCAG 60 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 3 2 2 80 11 84043298 84043709 AAGCAAGAGTGGTAAGCAG 58 84043236 84043255 TCAGAGTCAAACTTGCTGAG 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 1 3 3 80 12 30069029 30069050 GATATGATCCATACGCCAATCC 59 30051549 30068989 CTTTATGGACCCTCCTGGTG 60 NA Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 1 2 2 80 12 25060981 25062074 TCCTCAAGGAGGTGAAGGT 60 25062118 25062136 GCTTGTCCTTGTACAGCAC 59 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000088049 1 1 3 119 5 127651567 127651585 TTGCTGGCTTTGATGACTG 59 127648926 127651080 CTTGAAAGAAGGCGTGGTG 60 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 2 2 2 80 4 163220743 163220763 AGGTCTATCTCGCAATCAGAG 59 163217928 163220702 CTGACTTGAAACGAGTTGGG 59 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914 2 1 2 81 7 31792250 31792268 CCGGTTACTGCAAACAGAG 59 31792311 31795023 AGTAGACTCAAGCTTGTTGGA 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910 3 1 2 88 4 28646761 28646779 GACAATGCAGTGGGAACTG 59 28637801 28646712 TGCAACTTATCACTTCACTGTC 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420 3 1 2 80 1 261177909 261177929 CCGTGGTATCAGTAATGAGAG 58 261173955 261177867 TGCTAGAGACCTTACAGGT 57 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 3 3 7 80 1 83716245 83716264 AGAACCATAGTACCCTGGAC 58 83716305 83763149 CATATTTCTCCTCTTGCATGC 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008 1 1 7 116 1 83653843 83714394 TTTCAAAGGCTATGGCGTG 59 83714474 83714492 ATACGCTCCTCTACACCAC 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000082595 2 1 2 142 6 135214115 135214134 TTCCCTTGTTAGAGCCACTG 60 135214239 135216712 CTCTGCCGACACTTTACCA 60 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000085094 1 1 2 158 2 85753557 85753809 TCCATCCTGCATTATACTGCA 59 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 2 1 1 60 15 33770382 33770401 CTACAACCCATGTTAGAGGC 58 33770061 33770080 TGTCAGAACCTCCAGAATCC 59 NA DesignNoJunction Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000084218 1 1 3 81 X 10128313 10129911 AGGACGACAGATCTATGTAAGAG 59 10129952 10129970 GATGCCAGCTTCTTTGCAG 60 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716 1 1 2 97 6 72487112 72487131 TTGGAGTTAATGACACGGAG 58 72489154 72503021 GAGAAAGACCACTCTGCTG 58 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862 3 1 2 154 1 216725488 216728486 AAATTCCGAATTCACCTTAGCC 59 216721978 216722853 CTTCCAATTCCTCCTCTTCAC 58 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 2 2 2 123 8 72742851 72743536 CTCTGGCTAGAGATCTATTACAC 58 72743619 72744251 ATCTTGTAGCAACCTGGAC 57 NA Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000081087 2 1 2 80 14 37262073 37294248 ACATTGGAAAGACTTTCAGCTG 60 37262014 37262032 AGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544 2 1 3 82 13 71911370 71915147 CAATCGCTGGTGGTAACAG 59 71911306 71911325 AACCAGGAGGAATTTGAACG 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000003928 1 1 3 80 13 72282780 72283604 CAGGAATACCTAGCCTGCA 59 72282718 72282736 AGAGCAGAAGGCCAATCTG 60 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083 2 1 2 86 2 104785120 104785138 GTTACTCCACTGCCATGTG 59 104785184 104788637 CCAGACTTAGTCTCTTGATTTGG 59 NA Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 1 2 2 80 8 48475090 48475198 TGCAAGTCTACAAGGCTCC 60 48475239 48475260 CCTTAAGCTCTTGTATGTCCAC 59 NA Rattus norvegicus 81 Mcam ENSRNOG00000007726 ENSRNOT00000010463,ENSRNOT00000090780 3 2 2 80 8 48475092 48475200 CAAGTCTACAAGGCTCCAG 58 48475241 48475262 CTCCTTAAGCTCTTGTATGTCC 58 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 1 2 2 80 13 53318589 53319239 AGATACTGAAGGGACTACTGGA 60 53319280 53319298 TGACCAAATCTAGGCCTCG 59 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 2 2 2 81 13 53318590 53319239 GATACTGAAGGGACTACTGGA 58 53319281 53319300 GTTGACCAAATCTAGGCCTC 58 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063 2 2 3 81 1 190050647 190050665 AGCATCCAGGAGATAAGGA 57 190050708 190051506 CAGAATAAGGTTCATGTTGGC 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 1 3 5 80 9 97989254 97989272 TAGTGGCTGTCTTTAGCCT 58 97975848 97989212 TCTTGTTGACTTCCATGACTG 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000087595 2 1 5 87 9 97928306 97928325 AGATTCTGGTATGGAGGCTG 59 97927816 97928257 GAAGCAAAGCAGGACTACAC 59 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 2 2 3 80 18 12032958 12032978 TTCCAGAATGTTCTGATGGAG 58 12033019 12033404 TGGTGGTTATACCATCATGG 57 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000009665 2 1 3 86 6 34042312 34053182 TGGTACATGGTGGTCAACC 60 34053232 34053250 CTGAATGTTGACAGCTGGC 60 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 1 3 5 80 8 39404674 39404692 GAACTTTGTCCACCAGCAG 59 39392764 39404631 GCCTTCACCATCAGATTGTC 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 3 3 5 80 8 39392764 39404631 GACAATCTGATGGTGAAGGC 59 39392703 39392723 GTCCTTGCAGAGTTCATTGAC 60 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 2 2 2 96 7 12517651 12517672 CAGCAAGATCTGTGTAAATGGG 60 12516849 12517594 TTTGATGGCATTTCCCAGC 59 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 2 1 1 60 4 163121196 163121217 GAACTGTCAAAGAAAGAACCAG 58 163122132 163122151 ACCAATCTGAAGCCTTTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179 3 1 2 80 5 165933328 165934294 CTAGTCAGGATTTAGAGTCGGT 59 165934334 165934353 CTGCCTTCTTTATGTCCCAG 58 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000066014,ENSRNOT00000085646 1 2 2 80 6 104280893 104283648 ATCTCAGCTGTCTTGTTTACC 58 104280833 104280854 CGTAGATCTTCTCTTTGATCCA 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036179 3 1 5 81 11 78250499 78256042 CAGAAACATCTCCTTTCAGCC 59 78250438 78250457 AGAAGACGTCAGACTGTGTC 60 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000078453 2 1 2 88 5 173337574 173337593 ATCCCTTGGGCAAGTATCAG 60 173337224 173337525 GGATGTAGGACCAAAGTTGTC 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895 1 2 4 80 20 3827670 3827864 CATACTGTTTAACCCAGACGC 59 3827905 3827924 AGTGAGGCATACACCTTCTC 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895 2 2 4 96 20 3827468 3827601 CATCTTTGATCGGGTGCTG 59 3827661 3827679 AAACAGTATGATTGCCCGC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000078885 3 3 4 83 8 117876426 117877823 GGGTTAAAGAATATGCCATAGC 57 117876364 117876383 CGTTCTTATCACTGACTCCC 58 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 2 2 4 81 8 117889824 117890854 CCCAAGTGAACAAGAGATGG 59 117889561 117889582 TAGAAGAACCACCTCTTCAGAC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000016799,ENSRNOT00000086399 3 2 2 80 2 114364484 114366837 ACTGGAGCTGAATATGGTATGG 60 114366876 114366896 CGATGTCTGGTACACTCTAGG 60 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227 2 1 2 129 20 44804008 44804026 CCGACTACTACATGGCCAG 60 44804119 44854310 AGACACGTCTTCTGACCTG 59 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 2 1 1 113 18 25370439 25370458 CATCAGTAAATGCCATGGGA 58 25369987 25370008 CATAGGAACATGTTGTGAAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 2 2 2 80 15 27850643 27850662 CTGCCACACTCAAGATATGC 59 27850705 27851136 CCTTTACCCAATCCAAGCC 59 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 3 2 2 80 16 47912227 47912246 CGACTTGGTTCAAGATGTGG 59 47912287 47914557 CGTAATCGGATCTGTTTGAGG 59 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000079466 1 1 2 80 16 47914707 47917142 TTGTGAAGTCAAGAGGGAC 57 47917186 47917204 TGCATACTCTGTGGAACTG 57 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000085799 2 1 3 92 10 70566559 70580550 ATAGCCTGGTAGGACAGTC 58 70580606 70580624 CATTCAGACCACTGCTGAC 59 NA Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 3 2 2 151 14 1779186 1782626 TTCATTCCATGATGCCAAAGG 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000012681 3 1 2 89 5 134484680 134484698 CTCGAGAAGTTCCCATCCA 59 134477707 134477822 CATGCTCCAAGTGACAACTG 60 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529 3 1 2 80 16 8766313 8772196 AAATTACAGGTTCGAGGGAC 58 8772238 8772257 TGGAATTCTTTCACCCACTG 58 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000035907 3 1 2 139 9 15690649 15695728 GCCTCAAACAGGAAATCCC 59 15690528 15690547 AGTATAGGAAGAAGGCGGTG 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 3 2 2 80 17 9692773 9692792 GGAAGAATTCGCCCAATCAG 59 9692835 9693022 ATGTCGATTTCTGGAGGCT 59 NA Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 3 1 1 61 1 97714804 97714822 AACTCCACACTCTCCTGTC 59 97716757 97716775 CCTGAAGGTGACAATCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076674 1 1 4 142 10 23664287 23664305 TACAGCAATGGTGAGGCTC 60 23664411 23664973 TTCGGTCCTTATCCCTGGA 60 NA InUTR Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000050620 3 1 2 81 7 130036184 130037256 TCATCTCCACTGATCCCTG 58 130037301 130037319 GGAGGTAGATCACACCCTG 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 2 2 3 81 13 56204282 56204300 AGGAGATCACTTCAGGTGG 58 56206894 56207932 GCACCTCCTTTCTTGACTG 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 3 2 2 80 18 26584225 26584243 AGATCCAGGCACAGATCTC 59 26576486 26577307 AAGCTCCTTCTGGATATGCT 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 3 2 2 80 18 26584225 26584243 AGATCCAGGCACAGATCTC 59 26576486 26577880 AAGCTCCTTCTGGATATGCT 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 2 1 3 80 12 21745555 21749652 GATTGAACAAGCCATGGTCC 60 21745494 21745513 TTCAACAGATGCTTCTCACG 59 NA Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 3 1 1 84 10 14021922 14021940 GTCCTGGACTTCAGCAGAG 60 14021274 14021293 AAAGATGATTTGCTGCAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423 2 1 2 81 7 130252447 130252466 CCTTCACTCCTCAAGTGAGG 60 130252510 130252896 GTACTCAGAGAAGGCCTGC 60 NA Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 1 1 1 61 17 36915424 36915442 TAGAGGACAGACAGTGTGG 58 36906719 36906737 TGCCCTTGATAGTCAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261 2 1 2 80 5 135257449 135257467 TCTCTTGGACAGTCTGCAC 59 135216684 135234810 AGTAGAGATTAAGCTGCCTCTC 59 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281 3 1 2 97 6 136356407 136356425 AACCTGGGAGCACTTTACC 60 136356486 136358006 ACATTGTCAAGACCCTGCT 59 NA Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 1 2 2 80 1 126177905 126177923 GGCGTTCTAGAAGATAGCC 58 126175320 126177864 GAAATCTACATTGTTCACCCTG 58 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 2 2 2 81 8 82277429 82280540 TCAACAGTGTCCGATACTACC 59 82284060 82284078 CTCAGGTCATAGAGGCGAC 59 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000090264 1 1 2 87 18 27086606 27087893 ATGAGCTTGGTAGGAAGGC 60 27091190 27091208 AACTCTGCAATAGCCTGCA 60 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 2 2 2 80 5 63110340 63110358 ACGTGCTGACATCTATGCA 60 63110402 63111627 TAGTCTTCGTGGATTCCGC 60 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000057872 2 1 2 127 20 27039228 27043799 AAGGAGATCTGCACATTAGTC 58 27043887 27045976 TCTTCATTTCCTCTCACAGC 58 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000067528 3 1 2 81 10 55533800 55536242 AAAGTCAAGGTTGGCTTAAGG 59 55533739 55533759 CTCCTTTCATGTTCTCCTGTG 59 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000032273 2 1 2 80 14 44908629 44908648 ATCTGTTCTCTTCAGAGGGC 59 44908690 44917734 ATTGTCCAAGGATAGCCTGG 60 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000017573 2 1 3 84 18 25199538 25200167 AAATTGCCAAGCCTGTCTC 59 25200214 25200233 TGAGCTACAAGATGAGCCTG 60 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 2 3 3 80 19 10430953 10430971 TGCAGAACACCAAAGTCAC 59 10430526 10430909 GAGTCACGTTCTTTGGCTG 59 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491 2 1 2 82 X 15038909 15039041 TCCTTCGCAACAAGAAACG 59 15040851 15040869 GAAGTGGAAGGAGACAGCA 59 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 2 2 2 92 5 165355407 165355564 CCATGATGGTGAGTGAAGAG 58 165355619 165355637 CAAAGTACAAGCGAGAGGC 59 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 2 3 3 80 1 233135110 233138183 TGGACGTTTCCAAGTTTGG 59 233135048 233135066 GGACAATCACTACCGTCAC 58 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000022801 3 1 2 86 5 59017878 59020275 CCTGGAAGATGAAGTCTATGC 58 59017812 59017831 AGGGAAGTGATGTCATTGAG 57 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000001301 3 1 3 80 12 36738461 36740097 CTGTTCGTTGGGATGAACC 59 36740142 36740160 CACCAGATGGATCTTGCTG 58 NA Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 2 2 2 80 1 277658637 277659088 TACACGGTTGATCAGACCT 58 277659131 277659150 GATGTACAAGACATGTGCCT 58 NA Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 2 2 2 80 13 68836906 68836924 ACACCATGACCACAAAGGA 59 68836211 68836865 ATTCTTTGTTGCCACTTCTGAG 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 1 4 4 80 4 165185220 165185240 GGGATGAATGTAAACAGACCT 58 165176326 165185178 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000085609 3 1 2 104 8 117140678 117144407 GACCCTGCAATCAAATGGAG 59 117144474 117144492 TTTCCCAGGTTTCCGAGTC 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331 1 1 4 80 13 70229311 70240586 TGGGCAGTTATAACTTAGTAGC 58 70240729 70240750 TGAGAGCGATGTTATACAACAC 59 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000078274 2 1 4 127 5 58684305 58686357 ATCTGGTGAAGTCACTGGT 58 58686890 58686909 GTAGATTAAGGCCTGCAGAG 58 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366 3 1 2 119 9 114990094 114994609 AATCTTAGATGAGACCCACACC 60 114989996 114990014 ATAGCTGGGTGAAGCTGTC 60 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201 3 1 2 115 4 117264329 117267242 TATCTCAGTGTGGGAGGGA 59 117264232 117264251 ATCTGAAATGTGCAGAAGGG 58 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 3 2 2 80 16 8215857 8215875 CCATCAGTGAAGAGCCTCC 60 8215916 8217078 GATGAAGAAATCAACCCACTGG 60 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000082030 3 1 2 124 10 70720211 70720229 TATGGTGGAGACCGAAGTG 59 70720314 70721579 CTGTAGTCATTTCTTCCTCCCA 60 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069 2 1 2 80 3 15374120 15379233 AAAGTAGAGGAGGTGAAAGTC 57 15374060 15374079 ATTGGTCTTATCGCACTGAG 58 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 2 2 2 80 5 122683696 122683717 GAGCGTTATGATTTCTTTGCTC 59 122683756 122687648 CATGTAATCCGTTACACCAGG 59 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810 3 1 2 80 1 217680359 217681508 CACTCTCCAAGTCTGGTCC 59 217680297 217680317 TAAGCTTGGAAGTAAGCTCCA 59 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 1 2 2 80 8 4322708 4322729 GGACTTAGTTTGGTAACAACTG 57 4322768 4323113 ATAAGTAAGCTGACGGAACTG 58 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000046645 3 1 2 80 1 133431545 133431564 TGACAGTGTTTGATGAGGAC 58 133411273 133431505 CATCTCTAATAGACAGCAAGGG 58 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000056724 2 1 2 80 9 97190499 97190517 AGCTTCAGTCCTTCTGCAG 60 97187215 97190456 ACCACATTCCGTATCTGGAG 59 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000085981,ENSRNOT00000016876 3 2 3 100 3 22890309 22892597 AGAAAGGGACCAGGTTTGG 60 22890227 22890247 AATCTCTTCTAGCACCTCGAG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000045553 3 1 6 80 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132084325 132091523 CTTTCATCAGACATGCTGCC 60 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000044092 2 1 6 107 7 132099960 132099980 CCATATGCTGAAAGAGAAGGC 59 132095048 132098936 CTGCTGTCCTCTTCATCCC 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000080900 2 1 5 89 20 5416959 5417154 GAAACACAGGTGGGAAAGG 59 5417399 5417419 CACCTTTACAATCTGGGAGAG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 1 1 5 80 20 5416907 5416926 ATTGCAGCTGTGATCATTGG 59 5416967 5417161 GTAGACTCCTCCTTTCCTACC 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 3 2 4 80 7 120534779 120536150 TCAGCAAGCTGATTACCAG 58 120534717 120534737 CTTGTATGAATGGGAAGTGGT 58 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000067135 1 1 2 84 13 69962610 69984343 GCTTGTGGAGAACGTATGG 59 69962544 69962562 ATCACGGCCTTAGACTCAG 59 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683 2 1 2 81 9 100932613 100934934 CACTATCTGGACAGCATTGAG 59 100934975 100934995 CTGTTCTCTGGTCTAGCTCTC 59 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000064858 3 1 2 80 5 62241404 62259683 TTATTACCCTCAAGACTCTGCA 59 62241345 62241363 GTTCCTGAAAGGAGAAGCG 59 NA Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 3 2 2 96 7 121299762 121300066 ATTGCTCACACTCAGATGC 58 121299684 121299703 CTAGCTTCTCAGCTACAGTG 58 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544 1 1 2 90 8 85791702 85791980 AGAGTGGCATACAATGTTGTG 59 85790037 85790058 GCATCTAGCTCTTGAAACTCTC 59 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895 2 2 3 84 11 20689205 20700764 GCAGCTTACCTGAAAGATGG 59 20700810 20700829 TCCCGTCTTCATGGTTAGTG 60 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127 2 1 3 81 11 20471788 20472023 ATAGGCCTGGTTAATTCTAGTG 58 20474519 20474537 ATTCACCCACACTAAGCTC 57 NA Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 2 2 2 80 10 87299290 87299308 TGACAATGCCAATGTCCTG 59 87298771 87299249 ACTTCATTCTCATACTTCAGCC 58 NA Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 2 2 2 85 17 31442646 31442665 GGAAGTTACCATGGAGACAG 58 31442710 31442965 CGAGGCACATATTTATTACCAG 57 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 2 2 3 80 16 10889645 10895047 TGAGAAAGACTACATCAACCTG 58 10889586 10889605 TCGATAAACTTGTCACCAGC 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 2 3 3 80 6 76461472 76461493 CCATTCTCACCAATATAGGAGG 58 76455480 76461434 GATTTGTAAGGTTTACCTCCCA 58 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014034 2 1 2 83 2 263940428 263975748 AAGTTCTGCCAGATCAGGG 59 263975795 263975813 CCACATCAGGACTGAGGAG 59 NA Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 3 2 2 80 13 73437487 73437505 TGCTGTCACTGACTTTCCA 59 73435866 73437443 CTGGACTCTACCAGCACAG 60 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000070864 1 1 4 81 1 128267097 128267115 CCTTCTCAAGTACACCGAG 57 128243013 128267055 GCCTTTCTTTCTTAAAGTCTCC 57 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000070864 2 1 4 82 1 128267098 128267116 TCCTTCTCAAGTACACCGA 58 128243013 128267055 GCCTTTCTTTCTTAAAGTCTCC 57 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907 2 1 2 104 4 148399418 148399436 ATTCGATTCCGCAAGAACC 59 148399331 148399350 TGTTTGGAACCTGTCTGGT 59 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325 1 1 2 128 8 4441120 4441143 CTCATCTTAGTCTCCATTCTTGTG 59 4441229 4577177 TCTCCGGTACAAGTCATCTC 59 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 3 2 2 80 2 205641888 205644651 CCTTAGAACTCAAGAGTGAAACG 60 205644689 205644709 GCTTCTTACAGTAGCCAAACC 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 3 2 2 80 11 472603 476572 GGGAATGGGCACTTAAGAC 58 472541 472559 ATGAACTGCTTGTGTAGGG 58 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 1 2 3 80 17 21639929 21676090 ATAGGATTCCAGGAGTCCC 58 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000072024 2 1 3 81 12 41361455 41361473 AAGAAGCAAAGGAGTGGCT 60 41361517 41363040 GTCTGTACTACCTTTCCCGG 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000072024 3 1 3 82 12 41361452 41361471 CCAAAGAAGCAAAGGAGTGG 60 41361516 41363038 CTGTACTACCTTTCCCGGC 60 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000082037 1 1 2 80 5 153685039 153685059 GAGACATTCTCCTTCTCGGAG 60 153684635 153684997 TTTCCCATCTGCATCCGAG 60 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889 3 1 2 86 11 17558996 17559235 AAGTGGCATGGAGGATACAC 60 17559278 17559302 CAGGTAATTCCAGATATTTCCATGG 60 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 1 2 2 80 2 23322014 23323956 TCAGTATAGGCCAAGTTTCC 57 23323998 23324017 CCAACTCTTTGCATAACCTG 57 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203 1 1 2 96 X 156437507 156437610 CTGAGGAAGAGGCTCTTCG 60 156437670 156437688 AGAGTGGACAAACAGTGGG 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664 2 1 2 85 7 15785462 15785480 CTCTGCTGGATTCCTACCA 59 15785524 15785764 CTCTGTCTTTCCTATGGAAATCAG 59 NA Rattus norvegicus 81 Stox2 ENSRNOG00000009590 ENSRNOT00000068562,ENSRNOT00000090839 2 2 2 87 16 48122377 48210101 CATGACATCAGGTGATGTGTC 59 48210150 48210168 GGCCAAGCAAAGGATTTCC 60 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 2 2 2 80 11 15495173 15495194 AATATGTTGATCCATCCAGAGC 58 15495235 15498326 CACTCACATCTTGCTGCTG 59 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000012354 2 1 2 80 3 21627217 21628519 GACCATGTGATTCTGGAGGA 59 21627156 21627174 GCTAATAGACACTGGGCGT 60 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 3 2 2 80 1 219124078 219124580 GCTTGAAGTCAACAGATTTGC 59 219124621 219124640 ATGGATGAGATCTTGGCCTG 60 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 2 2 2 80 11 27026480 27026501 ATGGTTTCAACTATTCCCTTCC 59 27024746 27026440 ACCATTTGTACAAGCAAGCT 58 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721 2 1 2 86 7 70556570 70556588 GTATGAGGAGCAAGCACAC 59 70538438 70556521 AGACATATGGCTTTCCCAGG 60 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488 3 1 2 122 6 105463806 105467550 GTCAGGAGATGAAGGCCTC 60 105463702 105463720 TCCATAAGGCTGGTGAACC 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 1 2 2 91 10 36590566 36590584 AAGGTGATCTCCCTGTTGC 60 36590639 36598162 TGACTGCACTTCAATCCGA 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776 1 1 2 92 7 130326794 130331209 GTATCTGGAGGAGCTGGAC 59 130331265 130331283 GAACCCTGGATCAACAGTG 58 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637 1 1 6 80 1 41869510 41871468 GATCTTCAGGGTGTTCTGG 58 41869448 41869468 GTACAATGTTTGTCCTTCCTG 57 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798 3 1 2 100 6 104326116 104326135 CTTTCAGAGGTCAATGCCAC 59 104326198 104326331 TTAGTGCTGGTGTCCTCAG 59 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 2 2 2 80 X 16180376 16180396 GTCACCTTTGAAGACAGAGAC 59 16180438 16184456 AAAGGCTCCCTGATCTGTG 59 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349 2 1 2 80 4 157130521 157130539 TGGATCTGCTGTTCTTCAC 58 157130582 157130791 GGCACTTGATGATTTCAGTG 58 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 1 3 3 81 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942060 144943891 CATTCTCCATGGAAACTGGAC 59 NA Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 1 1 1 60 1 100205060 100205081 AGACTTCATCTTCAGTTTCCTC 58 100204567 100204585 GGCTGAGGAGAATCAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000084875 2 1 3 85 7 107190048 107193547 GCCCAAGATAAGTTAAGCGAG 59 107189786 107189804 TCACATTCAGGACCTTCCC 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000050073 1 1 5 179 11 27876311 27918029 CTCATCAAAGAGGCAAGGG 58 27868032 27873992 AATCCCAATCTTCTTCCACAC 58 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000074720 1 1 2 80 1 83049376 83049398 TCCATAGTGATCCATTCTTGGA 59 83049784 83049804 CTTCCTCAAAGTATTTGTGCG 58 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388 1 1 3 80 7 135524196 135524217 CGTATCTGACCAAAGTTGTAGC 60 135521703 135523876 GAGGTCCAAGATCCCACTG 60 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000088223 2 1 3 84 7 135515980 135522966 GGAGTCTGACTGGGAATGG 60 135515914 135515933 CAGTTGGTGGTAGTTCACAC 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 2 3 3 81 19 15213422 15213440 AGGGCCATTTCTGAGAGTG 59 15213482 15215142 TAGCAATCAGATTAGCAATGGG 59 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 2 1 1 60 13 83200334 83200352 CTACACCATCAAGGAGGGA 58 83199546 83199566 TCTTAGTCCTCGTTTGGTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809 2 1 2 98 1 226853509 226853528 CTACTTCAGTGAACCACCAG 58 226850570 226853448 TCTGGGAATCTTCTTTGGC 57 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 2 2 2 60 9 19452836 19452854 GGACAATCGCACTGAACAC 60 19454529 19454549 AGTGAATTGTCATAGCCATGG 59 NA DesignNoJunction Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 1 2 2 80 1 178658522 178658541 GCTTCACGTTAATTGCTCTC 58 178658582 178714763 CATCTATGATCTGGAAGGTGC 58 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000080031 1 1 2 82 17 29026164 29139968 CATCCAAAGATTATGGTGTATGAGG 60 29026106 29026125 CATTTGCCTCTTCCACACTG 60 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090 1 1 2 80 13 84591780 84591802 CCATTCTCACAATGATTTCCTCC 60 84591842 84596608 AAAGATCCAGCACCCTCTG 59 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836 3 1 2 83 5 151449080 151449098 CTCCTTGTGGGATCATGGG 60 151448837 151449033 AGCCCATAACTACTGCCAG 59 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000079072 2 1 2 80 1 186077662 186077680 CCCGTACAGTTCATTCCGT 60 186077722 186079203 TACATGACCCTTCTGAAGCTG 60 NA Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 3 2 2 80 8 76545396 76560135 GGATATTGAGGTTCTCCAGG 57 76545335 76545353 TCCAGTGTCTTTAAGGCAG 57 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508 1 1 2 80 16 7387900 7388120 CCTTCCTTAAGACCTATCAGACTC 60 7387843 7387861 CCTTCTCTTTCAGGTGGGT 59 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000035009 3 1 2 80 16 7388197 7388216 ACATCACCAATGCTATGCAC 59 7387897 7388158 ACTGAGTCTGATAGGTCTTTCTG 59 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 1 2 2 80 7 18516670 18518875 TTCAATGAATGTGGCCACG 59 18516608 18516626 AAACTTAACCACACCGCAC 59 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000066431 3 1 2 80 7 118168639 118172118 TATCCAGGTGTGGTTTACCA 58 118159160 118159179 AGGCTGTGCATATCTGTAGG 59 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741 2 1 2 80 11 30395819 30400947 ACTGCATTTGACAAGAAGCTG 60 30395759 30395780 ATCCTCTTTCTTCGAGTCTTCC 60 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000010481 1 1 2 80 5 5292455 5295800 AAAGGAACAGAGAATGGTGTG 59 5295841 5295860 GGAAGACTTCTCTTTCCTGC 58 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000082008 3 1 3 80 3 14637208 14637979 GTTTAACAATGGGACCCACAG 60 14637148 14637168 ACAATGCTGTCTCCATTTCTC 59 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000032792 3 1 2 80 8 94494285 94500666 AAACAAAGAAGGATCTGGTGC 59 94489472 94489496 GGTGTAGAATTAGGAGATGTAACAG 59 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 1 2 2 80 3 72021997 72022017 TGTCTGATTATGGTACTGCCC 60 72018387 72021959 CAATCATGTCTTCATAGCTCCTG 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095 1 1 2 80 6 6915318 6946704 AGCATGCTAAAGAAACTGAGG 59 6946746 6946764 GTTTCAGCTGGTGCTTCTG 60 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 1 2 2 80 10 70515041 70515061 CTCAGGACATACAAGCTATGG 58 70514123 70515002 TCTTCTTACCAATGCTTCTGAC 59 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981 3 1 3 81 1 66237479 66253695 AAGACCAGGAACCAGTGAC 59 66237416 66237434 CGCTGAACAAGGTCTAGCT 60 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 3 2 2 80 2 96500106 96500127 GCACGTATTAGTAATAAGGGCA 59 96498493 96500066 CGGAGATGGCTTATACTGTG 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281 1 2 3 92 12 46353401 46353419 GGTGGGAGAGTTTCTAGGG 59 46352198 46352622 AAGTAATTTCTCAACCCACACG 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 2 3 3 80 7 2470084 2470103 AGGCTGTTTCCAACATTCAG 59 2470146 2470294 CCGTTTCATCAACCTCCTC 58 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 3 2 2 80 8 94350327 94350345 ATCGTTTACACTCCCACCG 60 94326215 94350285 ACTGATAAAGAGGCCTCTTGG 60 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000072244 2 3 6 89 13 84513782 84514805 CTCAGGCCTTGTATGAAGC 58 84514858 84514876 CAGAGGGAATGGAGTAGGG 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000074954 3 1 6 80 13 84510542 84522953 ATTATGCCAGTTCGCAAAGG 59 84522993 84523014 CTTCTCGACATAGTACAGGACC 60 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000087439 2 1 2 81 3 46809624 46810531 CTCTCAAGGTGCAGAGTCC 60 46807227 46807245 ATGGAGGGAGTTAACACGG 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076069,ENSRNOT00000000787 1 2 3 80 20 21857340 21857358 TTTACGACGAGTTAGGCGG 60 21857399 21874602 GCAGGATTAACCTTTCGTAGTG 60 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076069,ENSRNOT00000000787 3 2 3 80 20 21857397 21874601 GACACTACGAAAGGTTAATCCTG 59 21874641 21874659 GAGGTTTGATTGGAGGCAG 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000000787 1 1 3 80 20 21847162 21847181 GATGAACAAGCCTTCGTGG 59 21847223 21847243 GAAACCCAAGTAGGGAATTCG 59 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 1 2 2 80 7 18600666 18600685 GTCCTTCATTGAGACCTCAG 58 18599923 18600625 ATACGGTAGATTTCTGTGAGG 57 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734 2 1 3 103 3 129599378 129599399 GGATGGACCAAATCAATAAGGA 58 129599460 129779771 GGATTTAAGCTTGTTACAGGGA 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 1 2 2 80 3 9865831 9868323 CTCTACACCTTTGAAGGTCAG 58 9865771 9865789 TTTGTCCTCCTCAATCACG 58 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596 1 1 2 80 X 157358459 157362139 CAGGATCTTCTAATGGGCC 57 157362183 157362201 CAGGCTCTGCATCATATCC 58 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000055829 3 1 2 81 1 134832432 134833702 TGGGAAAGAAAGGAGTTGAC 58 134832370 134832389 TCTCCATTAGCTTCAACAGC 58 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000085987 3 1 2 88 20 44592849 44599153 TTACTCAGGTACCTGGAATGG 59 44599202 44599221 CTTCCTCCAGGAAGGATTCC 60 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660 1 2 3 80 19 21484626 21492244 ACTGCACAGAATTGGAACG 59 21484564 21484584 ATCAGTAAAGTGTAGTGTGGC 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 1 2 2 139 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 1 2 2 93 1 99534186 99534204 CTACATCAGAGGTGTGGTC 57 99537448 99537466 TTACTCTTGATGCGTCCCT 58 NA DesignNoJunction Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000013761 3 1 6 137 5 150125521 150125540 GTGAAGGTTGAAGAGAAGCG 59 150121895 150122079 TTCTGCAAGCTTCTGAGCT 60 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634 2 1 2 91 7 15242240 15247388 AGGAAATGGAGCCAGTGAC 60 15247441 15247461 GTAGAGCTTCTTCTGACTGGA 59 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479 1 1 2 80 1 129769066 129769085 CCTGCTACTCTATGTTTGCC 59 129768648 129769023 CAGGATGTGGATCAACCTC 58 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479 2 1 2 80 1 129769067 129769086 GCCTGCTACTCTATGTTTGC 59 129768649 129769025 AGGATGTGGATCAACCTCTG 59 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 2 1 1 79 10 17375075 17375093 ATGATCATGAACTGGCCCA 59 17389910 17389928 ATCGTAGCACTCTGTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000042082 1 1 2 84 9 98398209 98398227 CGGAGGGTTTCTGTGAGAG 60 98406832 98418598 CCTGGTAGTAACCCTCATAAGG 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891 1 1 3 104 6 3745081 3748790 GAAATGGAAAGTGTTCCTGTC 58 3744997 3745015 CTCTTGACGATGCCTACAG 58 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 3 2 2 80 9 100305607 100305627 GTGTCCTCAAAGATCTTCTGG 59 100302243 100305565 CAGCATTCAGTGAACCTGG 59 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000088824 3 1 2 156 9 38344737 38344757 CTCTACTTCAAGGGACAAGGT 59 38350200 38350220 CATGGCTACAGCCAATCCT 60 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425 3 1 3 113 11 35665352 35665373 GGTTAATGCATGCTAGAAACAC 58 35656052 35663526 GAGGCTCATAAGGTAAATCTGG 58 NA Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818 3 2 3 86 11 35696795 35749412 CTATTAAGGAGGCCTTGTCAG 58 35696729 35696747 TTTCTGTCTTAGCCAGGTG 57 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984 2 1 2 80 12 40631519 40631540 GACTTGAAGCACATCTAATTGC 58 40628109 40631479 TACTCAGATTCACCGGAGAG 58 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894 1 1 2 80 14 64739600 64739621 CTGTCATATTCAGACCAAACGT 59 64739662 64739681 TGGACAGTATTGGGAGAGC 59 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 1 1 2 80 10 13808259 13808277 CCCACTACGCTGAGTACTG 60 13808319 13808344 ATTGATGGCAGATATGTCAGGT 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000068592 2 1 2 168 3 148714451 148714469 TCACCGAAAGGACCATCTG 59 148712374 148714319 CCAATTGCAGACCTTGCAG 60 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 3 1 1 62 3 161297815 161297833 GTCCAACTGGAGTATGGCT 59 161296506 161296525 ACTCCTCTGGATCACAAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129 2 1 2 104 20 5136997 5137015 TCCAGCAGGACATTCAGAG 59 5137083 5137930 TATCAGACCGGAGCTTTCG 59 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 1 3 3 84 9 44568673 44570707 CAGATAAAGTATTTCAGCCTAGACC 59 44570746 44570767 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 1 3 3 80 14 6436678 6436697 ACTAGATACAGGCTTCCTGC 59 6435918 6436637 TGTAGCAAAGCCCTAAATCCA 60 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 1 2 2 80 12 40624379 40624397 GAGTTTAAGCGTCTGGCTG 59 40624439 40625101 GTCACCATAGTCTGAGATCCC 60 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124 1 1 2 80 1 244757839 244776571 CAAGGACAGGAAAGAATCCG 59 244776612 244776632 ATTGTGACAGAGAAGCATGAC 59 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000016740 1 1 2 87 1 244757840 244765386 AAGGACAGGTGTAACGTGG 60 244776021 244776039 AGACTTCACTGAGCTGTCG 60 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 1 2 2 83 12 44968639 44968657 CACATTCACAGGGTGACTG 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502 3 3 5 104 X 159158286 159167172 CAAAGACACTCAGGTCCCT 59 159167238 159167258 CTTCTGCACATACTTCTTCCC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000091626 1 1 2 81 19 19267514 19286055 ACTCAACTTTATTCTGGCAGTG 59 19267454 19267472 ATGTCCGGGTCATCATAGC 59 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 3 3 3 80 8 22427973 22427991 GTCCTTGACCATCCATCTG 58 22428034 22429337 TTGACTGATAGCGTTTCTCC 58 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000085320 2 1 3 80 8 22423610 22424314 CTAATGTACAGAGATGGCGTC 58 22424353 22424374 GGTATACTGAAGAATGCTTTGC 58 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 3 3 3 80 7 61183069 61184372 CAGAGAAGAAGGCAGACGA 59 61184415 61184434 CAGGCTTCTTTATAGGCTGG 58 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 3 2 2 86 10 90231207 90232777 CAACCTTATGAGCGTGGAC 59 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879 1 1 2 81 10 89986719 89986740 CCTCTTACACCTACAAGGAGAC 60 89986782 89987412 GGAGACCAGGAGAAGTCAG 59 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000017900 1 1 2 92 8 59457133 59458555 CCAAGTGCAGGATACACCT 59 59458611 59458629 GGTGCCTCCAAGTTTAGGT 60 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742 3 1 2 80 7 137326463 137327820 CGTACATTGGGCTTGTCAG 59 137327864 137327882 CTGGAAGTACAACCAGGCA 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948 3 1 5 86 7 80555209 80721373 TCTATACCATTGATACTGGCCA 59 80721417 80721438 CAATAGTTCCCTTAGGCTTCTG 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 3 1 2 172 7 26690105 26690123 GCTTAGTCTTGCGTTCGAG 59 26646686 26646704 AGATGAGTTCGTGGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000025443 3 1 2 123 3 22413278 22500682 GCTTTCAGATCCTGAGGTG 58 22381221 22381239 GCCAACTTGGCTAACTGAG 59 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000091747 2 1 2 107 3 22413272 22458901 ATATCCTGAGGTGCAGAGG 58 22381231 22390105 CTAACTGAGAGGCTGTCCA 58 NA Rattus norvegicus 81 Gdf2 ENSRNOG00000057751 ENSRNOT00000085255 1 1 1 80 16 10267899 10267920 GTACAACAGATACACTACGGAC 58 10267959 10271053 GATATAGCATCTTCCACGCTG 59 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000032224 ENSRNOT00000040210 2 1 1 70 2 198412294 198412312 AGAGGAAAGGGTGGTAAGG 58 198412242 198412260 ATGTTATCCCGCAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F5 ENSRNOG00000057855 ENSRNOT00000079872 2 1 1 80 13 82496516 82500063 CCATATGCCATTTCTAAGGGT 58 82500104 82500123 ATGTACCAGCTCTTGTTCTC 57 NA Rattus norvegicus 81 Pdha2 ENSRNOG00000016223 ENSRNOT00000021719 1 1 1 60 2 246736992 246737012 GATCCAATAATGCTTCTCCGA 58 246736952 246736971 ATTCTTCAACACTGCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 2 2 2 80 X 20144761 20144971 TGGAAGAAATGGAGGTGAC 57 20144699 20144718 CTGGATCAGAAGGTTGAGAC 58 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029,ENSRNOT00000076929 1 2 2 128 10 88336517 88336535 GATCGAAGGTCTGGACAGG 60 88336833 88336851 AATAACAGCACAGCACTGC 59 NA DesignNoJunction Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 1 1 1 96 8 55623430 55623448 ATACCAGTGTTGGGACAGC 60 55624462 55624480 ATGTCAAGGCAGGAAGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631 2 1 2 80 5 156549242 156549262 ATTACTTCCTGTTGGTAGAGC 58 156549301 156554623 GTGAAGTCCAACTTCATTTGTC 58 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712 3 1 2 80 8 50083262 50083282 GGAATTGCAGAAAGAGAAGCT 59 50083040 50083220 TGGTAAAGCCAGTTCTCCT 58 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 3 2 2 81 3 43113698 43114554 ACTATTCCAGGTTCCAGGC 59 43113635 43113654 AGGAGATCGTAGAACTGCTG 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000078001 3 1 2 110 3 43113047 43113171 AGTGGAGGAATATGAACATCG 58 43112809 43112828 TTTGTAGCTCTTCCACTCTC 57 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 2 2 6 80 10 89217313 89217333 AATAGCTTCACTCTGATCGGG 60 89217148 89217272 GTCTCCAGTGACCTTGAGTC 60 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 2 2 2 99 3 166987073 166987091 GTGTTGACTGTGCAGAAGC 60 166985501 166987010 GCCTCTTTCCTTCAAGGGA 59 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607 3 1 2 111 8 118323043 118323062 CATTCACCCTACTGGGAGTG 60 118323136 118325376 GTCTACCCTAGACATGCCG 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 1 2 2 80 3 161230716 161232941 CTCTTTAAGTATGCAGCAGATCC 59 161232981 161232999 CATCTTTCCTCCTGTTGCC 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 1 2 3 80 14 83587893 83589633 GTGAAAGAGGTCAACCGGA 60 83587831 83587850 ATTGATCTCCAAGATGCGGT 60 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 2 2 3 80 14 83587894 83589634 AGTGAAAGAGGTCAACCGG 60 83587832 83587850 TTGATCTCCAAGATGCGGT 59 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 1 2 2 91 5 157172164 157175035 TCTTCTGCTGGACAACCTC 59 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 3 2 2 92 5 157172163 157175034 ATCTTCTGCTGGACAACCT 59 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 2 2 3 149 14 81014708 81037662 TTGATGATCTCGAGTCTGCA 59 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000081780 1 1 3 80 12 43576726 43576799 GCTTTCAGTGGCTGAACTC 59 43576664 43576684 GAAATTATGGGTCCACAGTCC 59 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000074457 3 1 2 80 8 32306680 32306699 GCTCTGAGGAAAGTGAGGAG 60 32302565 32306639 TTCCAGATCCTTCGTTCTCAG 60 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 2 2 2 80 10 59575155 59575358 GGAAAGCCCAAGGTATTCG 59 59575400 59575420 GACACCAACCAAAGATCTCAC 59 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 2 1 1 60 1 207655048 207655066 AGAGATGAGAACGACCCAG 59 207655728 207655746 TCTTCTCACAGTTTGGGTC 57 NA DesignNoJunction Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 1 4 5 80 8 99640718 99640737 CGAGAAGTCATGACTCTGGA 59 99640777 99717130 CTGGATTTCTATCTCCTGGAGG 60 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 2 2 2 80 2 180084961 180118760 TATCATGCCACAAGTCACAG 58 180118803 180118821 GCATTATTGAGCAGGTCCA 58 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000082267 1 1 3 80 3 176487420 176488632 CACAGGAGAAGGGAGTTGG 60 176488675 176488694 TGTCTGAAGTGTCTTCAGCT 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 2 3 3 80 1 219856718 219857179 TGGTCTTCAAGTTCTGTGAG 58 219857222 219857240 TTGGCAGGTAGTTAAGGGA 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268 2 1 7 80 16 64036979 64041403 CTTCTACATGACTTCTAGGAGGA 59 64041440 64041461 TCTTTCACAAGGCTATGATCCA 60 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000033656 3 1 3 83 X 23139472 23139493 AACCAGGTTACAGAAGATCTGG 60 23124618 23139428 AACTGTGGTATGGAGGAGC 59 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 2 2 2 80 3 72456006 72456149 CAAAGAGAAGAAAGAGGAGTGG 59 72456188 72456208 CCTTCATACTCTTTCATGGCT 58 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000061657 1 1 2 123 7 3379290 3379308 GTATACTTGGACCCGGTGG 60 3379395 3383229 AGAATCCCAGCTTCCACAG 59 NA Rattus norvegicus 81 Mid1 ENSRNOG00000003613 ENSRNOT00000086414,ENSRNOT00000004873 1 2 2 80 X 25472406 25477256 TGAAGACAAACAGTCAGCCA 60 25472345 25472363 CAGTCAGGTTGTCATGGGA 59 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 3 2 2 80 9 54950 56045 AGCTTCCCAGGCTTATGAC 60 56088 56107 ATATTCTTTCTGCTCCCGGA 59 NA Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832 2 1 2 92 2 34719848 34748284 ATGACGAAGGCTGGATGTC 60 34719774 34719793 TCTCAAACGTGTCTGAGTCC 60 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213 2 1 2 126 10 89699276 89699487 CCTTCTGCAGCAAATCTCC 59 89698962 89698981 TGACTGAGATCCTGGAAGAG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000008785 3 1 2 99 7 97967524 97976921 CAGCAGCTGCTATTGTGAG 59 97967443 97967462 CGATATGAAGACAGCGTAGC 59 NA Rattus norvegicus 81 Abhd2 ENSRNOG00000017120 ENSRNOT00000023506,ENSRNOT00000090897 1 2 2 80 1 141026715 141026733 ACCTCTACTTCCAGGACTC 57 141026775 141053127 GTGGTGGAATGTATTCTTTGG 57 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 1 1 3 80 20 4696040 4789684 AGGAAGAGAAACACAGGAGG 59 4674757 4674775 GGACACATCAGAGCTCTGG 60 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 2 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532383 22534333 CTTGTAGACGTTCCTCTGC 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000087550 1 1 5 107 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420455 4420644 TGGAAGGAGAAGTATCTGTCTC 59 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 3 2 2 80 14 86112389 86112623 TGACGGAGTAAGGTTCCTG 59 86112327 86112346 TCTAAATGGTCCTCCATGCT 59 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000052403 1 1 2 80 2 210748641 210748659 AGAACCAGGTCATGGACAC 59 210747661 210748598 AGAACTCTGGCTTTCCACTC 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 2 2 4 121 14 84308102 84308362 GAGCTCGGAACTTTGACCT 60 84308574 84309823 GTACTTCTGGATCACCTCTGG 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000087383 1 2 4 85 14 84277971 84277989 GAGATCCTCCAGGATGTGC 60 84278038 84282991 AGGTCAAAGTTCCGAGCTC 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 2 3 8 86 20 4364126 4364247 CCAATGTCCCTAATAAGGTGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186 1 1 2 80 1 73396101 73396332 GAAGGCTACTCAAAGAGATGC 59 73396041 73396061 TTCTGGTGGAGTCTATCTCTG 58 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 1 2 2 80 8 56592802 56592822 TAAACTGACCAAAGAGCAGTG 59 56592861 56593506 ATTGAATCTTCCCTTAGCATCC 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 2 3 3 80 16 54174585 54183969 TGCTGACTATGCAAGGAGAC 60 54184012 54184030 TTTCGTATTGTGCGAAGCG 60 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083 2 1 2 80 5 78137856 78137874 GGAGAGTTTGAGCTGGAGG 60 78137547 78137815 CAGAGTCACCATCTTGATTGTG 59 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 1 2 2 80 5 70292370 70302007 TTGGGATGGGATTTATTTGTGG 59 70302046 70302066 TTCCATAGCTGTCGTATCCTG 60 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000020323 1 1 2 80 3 161238806 161238824 AGGAGAACCCAACATCGAG 59 161238865 161239158 AGGTACTTCTTAAATGCTGTGG 59 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 1 2 2 80 3 161816964 161818569 CTGAAACAGAACAAGGAGGT 58 161816903 161816922 AGGAGCGATGAAATTCAGTG 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 2 3 4 84 3 56886775 56886879 TCAGAACACAGTCACTATTCC 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 3 2 2 80 5 105578893 105578911 GTCAAGGTGACAGTGTCAG 58 105427859 105430505 CGGCTTATTCGGTAACGTC 59 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 1 2 2 80 3 148351654 148351674 TCAAATGATTGTCCTTCCCTG 58 148351713 148353081 TCTAACAGATCTTCTCTGAGGC 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000046115 1 1 2 80 5 162247615 162248281 AAGAATGGCTCAGTTGCCT 60 162248322 162248343 AATCCAAGTCTGACTGTGAGAG 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000085378 3 2 4 90 5 160364630 160364649 GAACATCTTCAATGGGACCG 59 160364702 160370864 ATGGTCTTTCTGCTCACCA 59 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000033653 3 1 2 81 3 424003 429523 GTTATTCTGTGAGGTGAGTGTG 59 423943 423961 TTCTGGCACCTTCAAAGTG 58 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816 2 1 2 80 3 424005 427850 TGCTGTAGACAGGTGAGTG 59 423943 423961 TTCTGGCACCTTCAAAGTG 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547 1 1 2 80 3 66827913 66827939 AATTCTGGCATCTTTCTTTCCC 59 66827854 66827873 GACTTCCGATCACAAAGTGG 59 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252 2 1 2 83 16 62211205 62211224 CTCATCAGTTCCAACTGCAC 59 62207812 62211165 CTTCTTTACTTCCTTAACCTGTGAG 60 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252 3 1 2 83 16 62211204 62211222 CATCAGTTCCAACTGCACC 59 62207810 62211163 GTCTTCTTTACTTCCTTAACCTGTG 60 NA Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 2 1 1 69 16 75028948 75028967 TTTCCTTAATTGTTGCCGGG 59 75027252 75027270 CTTCTGTACAGTGTGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000057845 3 1 2 91 16 79889114 79895107 AAGGTCAGATGTAGAGACAGC 59 79889043 79889061 TTTCGTCTTCCACTTGCAC 59 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000089265 1 1 2 87 16 74887643 74887661 AGACGAGAAAGATCCTCCC 58 74887711 74906122 AGATAAGATCTGGGACCTCC 58 NA Rattus norvegicus 81 SNORA73 ENSRNOG00000061662 ENSRNOT00000084684 3 1 1 60 5 150530232 150530251 CAACGTTGGAGATGAAGCTG 60 150530191 150530213 TCTGAGAAGTCGTAGGAATATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 1 1 1 60 2 115231945 115231966 CTTCTGTTCCTGAGCATCG 58 115231903 115231921 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000060204 ENSRNOT00000082559 1 1 1 60 8 16713673 16713691 AGAGACTTTGACAGCCCAG 59 16713713 16713733 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056497 ENSRNOT00000090063 2 1 1 60 2 180669058 180669079 GAGAAGATATCATGATCACGGA 57 180669100 180669118 CAGAGTGCCATGGATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.1 ENSRNOG00000051378 ENSRNOT00000088119 2 1 1 61 2 225052667 225052685 ATGGCTCGGAGGTTAAGAG 59 225052624 225052643 GTCCTCGAAATCAAACTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044200 ENSRNOT00000069467 3 1 1 60 2 142840837 142840858 TACTCAGTGGAATTTCAGAAGC 59 142840798 142840819 GTCTCCCATCCAAGTATTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107597.1 ENSRNOG00000054617 ENSRNOT00000088311 2 1 1 60 8 70269214 70269232 TCAACAGTTCGCTTAGGCA 60 70269172 70269193 CTTCCCTTGTTATTGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061846 ENSRNOT00000090482 1 1 1 60 5 102143002 102143023 GAACGATGAAGAGAAGATTAGC 57 102142963 102142982 CCTTCACAAATTTGGGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059993 ENSRNOT00000085968 2 1 1 65 8 32053295 32053314 CAATGAGGTTTATCCGAGGC 59 32053342 32053360 TCCATGTCCAAGACAACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059021 ENSRNOT00000089219 2 1 1 60 11 46962273 46962291 TCCATATGCGTCCATCCTG 59 46962231 46962250 TCACCAGTTCACAGCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057167 ENSRNOT00000088951 1 1 1 60 5 4665128 4665146 GATCAAACCTCTCGTGCTG 59 4665086 4665104 CACTATGCTACCCAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054899 ENSRNOT00000090522 1 1 1 60 11 35158277 35158298 GTCAAAGAGGATAACCTTTCCA 58 35158314 35158337 CTTGTATACTCTTGACTGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052768 ENSRNOT00000084209 2 1 1 62 11 83854807 83854825 GGATGTGCTGACTACTGGG 60 83854763 83854784 CACTACCACAAACTGTACAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061362 ENSRNOT00000089659 3 1 1 60 2 201142245 201142264 TTTGTAGCCATGGGATCTCC 60 201142204 201142222 CTGAGCTGTCCAAGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054199 ENSRNOT00000081328 2 1 1 60 2 84226315 84226333 GCTGATCCCTGTGATTTCC 58 84226273 84226293 CCTACTGCCACAAATTATGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058534 ENSRNOT00000090841 2 1 1 60 2 250960750 250960771 GATCAAGGTTCATTTGAGTAGC 58 250960789 250960810 CCTAGTCAGTCTTATCAGATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033759.1 ENSRNOG00000044762 ENSRNOT00000070029 3 1 1 62 11 38902807 38902831 TACTAATAGAGAAACACTGTCTCGG 60 38902850 38902869 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000061440 ENSRNOT00000081926 3 1 1 78 16 8337994 8338012 CTGCTGGGAGAGTAATGTG 58 8337934 8337952 CCTTCTTACACCAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058948 ENSRNOT00000081732 3 1 1 60 16 64345302 64345321 CACCTTTCTCCCTCATACCT 59 64345343 64345362 CCTCTTGATTGAGTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034790 ENSRNOT00000052913 3 1 1 60 16 81470828 81470847 CTGATCTTGTCTGATCTCGG 58 81470867 81470888 TCTCCCATCCAATACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026534.1 ENSRNOG00000050993 ENSRNOT00000075497 1 1 1 60 16 81538541 81538560 CCAGATCAAAGCTCATGTGG 59 81538582 81538601 AAGCACGACTTGATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000057375 ENSRNOT00000083819 2 1 1 79 X 106471719 106471737 GGTAGAAGAAAGGGCTCCG 60 106471780 106471798 TCTGAGGATAGAACCTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054958 ENSRNOT00000084098 1 1 1 60 8 126883586 126883604 TCGATGAAGAATGCAGCCA 60 126883627 126883646 CCATGATCAATGTGTCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025481.1 ENSRNOG00000050139 ENSRNOT00000073719 3 1 1 78 16 39029719 39029738 CAGCAATGAATGCTTCAGGA 59 39029660 39029680 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam34l ENSRNOG00000056277 ENSRNOT00000078614 2 1 1 60 16 51732604 51732628 GCTTTAGAGATAGTATAGACAGTGG 58 51732643 51732664 GTCTCCCTCTGGTTAGTTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000052277 ENSRNOT00000078472 1 1 1 60 16 10631123 10631144 GTAATTTACACAGCCAGACACC 60 10631084 10631104 GCATATCGGCCATCTTAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041881 ENSRNOT00000063634 3 1 1 60 16 27442833 27442854 ACATAGCACCTTGAATGTACCT 60 27442794 27442813 GCTTTAAACCCTGCTTAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058511 ENSRNOT00000085656 3 1 1 61 16 53889783 53889802 TCCATGGTGTGATTATTGCT 57 53889741 53889760 ATTGCAAATCATCATGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060982 ENSRNOT00000085780 3 1 1 61 X 98033391 98033409 AGAGACTTTGACAGCCCAG 59 98033432 98033452 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053676 ENSRNOT00000084384 2 1 1 60 16 33976076 33976098 GGAACGATACAGAGAAGATTAGC 59 33976118 33976136 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051700 ENSRNOT00000077351 3 1 1 60 X 99119518 99119539 CAGGGATAACTTAGCTGATTGG 59 99119479 99119498 GGAGCAAAGTGGATCAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067082.1 ENSRNOG00000048948 ENSRNOT00000075106 1 1 1 60 9 29585111 29585129 AACACATGGAAACAACCCT 58 29585069 29585089 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067082.1 ENSRNOG00000048948 ENSRNOT00000075106 2 1 1 60 9 29585110 29585128 ACACATGGAAACAACCCTG 58 29585068 29585089 TGTATCTACAGCTCCTTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067349.1 ENSRNOG00000059580 ENSRNOT00000084762 2 1 1 60 9 40965286 40965304 TTCTGAGCTTCTTCCCACC 59 40965323 40965346 GATGAAGGTAGAAAGTGAGAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059483 ENSRNOT00000087929 1 1 1 60 6 57104342 57104360 TGTTCACTTCAGTGGTCTG 57 57104300 57104320 CAGCCTTGTTAATCTTCTCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000053107 ENSRNOT00000091035 3 1 1 65 6 88973485 88973503 ATTTGCTGTGGACATGACC 59 88973530 88973550 TGCTATCCAAGTAGCATATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061686 ENSRNOT00000088324 1 1 1 75 X 157034123 157034141 TGACTTTCCTCATGGGAGC 59 157034066 157034085 AGGTAACAGTGAATTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060809 ENSRNOT00000077795 2 1 1 60 9 23658614 23658632 ACTGGTCTTCAGTCAAGGG 59 23658572 23658592 CTTGTTTGGAGGTTCTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056006 ENSRNOT00000083035 3 1 1 60 X 44184140 44184164 GTTATGTCACATGTGTATGAGTAGG 60 44184179 44184200 TAGGCTAATTTGACATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027575.1 ENSRNOG00000058289 ENSRNOT00000080424 2 1 1 61 17 37617630 37617650 CAATGAAGACAGAAGGCTCTG 59 37617673 37617691 CCTAAGCCCAACACAAACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054805 ENSRNOT00000078611 1 1 1 60 X 132996384 132996406 GTACAGAGAAGATTAACATGGCC 59 132996346 132996365 TGGAACACTTCACGATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058743 ENSRNOT00000085721 3 1 1 60 X 74088799 74088819 ACACCTTAATGGTTGTGTTGC 60 74088841 74088859 CAAAGGACTGCAATCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052123 ENSRNOT00000091066 3 1 1 60 X 40865765 40865784 ATACCATGACCAGGAAAGTG 57 40865724 40865742 GCATACCTAGAGTGCAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052806 ENSRNOT00000079759 1 1 1 62 9 41623437 41623455 AGTAGGTGGCAGTGAAGAG 59 41623393 41623417 GATTATTGAGATGTTCACTGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060380 ENSRNOT00000081429 3 1 1 60 9 104363967 104363985 CAATCCAGAATTGGAGGGC 59 104364008 104364027 AGAAACATGTGTCTTCCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.2 ENSRNOG00000059411 ENSRNOT00000084457 2 1 1 60 X 152889578 152889598 ATCTAGTGGAAACACTTCTGC 58 152889620 152889638 CAGAAGCATTTCTGCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039950.1 ENSRNOG00000048605 ENSRNOT00000054663 1 1 1 76 X 88635287 88635305 TACAACCAGTGCAGACTGG 60 88635229 88635247 GTCCTGCTTGAGAGTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056416 ENSRNOT00000081745 3 1 1 67 2 116480676 116480694 TGTGTTGTAGGTGGCAGAG 60 116480725 116480743 TCAGATGTCCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044968 ENSRNOT00000070235 2 1 1 60 X 11124409 11124431 CTAACCTGAATATCCCTGATCTC 58 11124371 11124389 TACTCACTAGGCTCAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044968 ENSRNOT00000070235 3 1 1 60 X 11124407 11124430 TAACCTGAATATCCCTGATCTCTG 59 11124370 11124389 GTACTCACTAGGCTCAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007743.1 ENSRNOG00000041964 ENSRNOT00000063717 2 1 1 71 2 26641755 26641776 GTGTGATATTTGGGACATACTG 57 26641705 26641724 CAGGGAAATTTGAATGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054461 ENSRNOT00000078521 1 1 1 60 3 38450103 38450121 GAGTTCAATGGCAGAGGTG 59 38450144 38450163 GGAGAGTAGTCTGAATTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000060642 ENSRNOT00000085606 2 1 1 60 X 123382854 123382873 AACTGGCTAGTGGAAATGAC 58 123382890 123382914 TGGACTAGGAAGAATATGAACAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056326 ENSRNOT00000087675 3 1 1 80 X 109174665 109174683 ATTCTCACTTTGGCAGCAC 59 109174603 109174622 TGCATGTGATCTTTCTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058754 ENSRNOT00000089315 1 1 1 60 6 43429142 43429164 GCTTAGGATGACACAAAGAAGAC 60 43429183 43429202 CACAGATTTGCACAACATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054786 ENSRNOT00000079057 1 1 1 60 2 89239211 89239231 TGGCTATTACTTTCCTTCCTC 57 89239253 89239271 CCAAACACTCAGCTTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.3 ENSRNOG00000054152 ENSRNOT00000080346 2 1 1 60 15 40494975 40494994 TAGGACTTTCATGGCTGGAG 59 40495017 40495035 GTCTGCCTGTGTTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.3 ENSRNOG00000054152 ENSRNOT00000080346 3 1 1 61 15 40494976 40494994 AGGACTTTCATGGCTGGAG 59 40495019 40495037 GAGTCTGCCTGTGTTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Pi15 ENSRNOG00000017686 ENSRNOT00000023899 3 1 1 82 5 796566 796584 CTTGCATTTGGGACCATGG 60 795585 796522 AGAGCGATATCTTCCAGTTCG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058056 ENSRNOT00000085208 2 1 1 60 15 36421656 36421677 TCACATGTACATCAGTAGGTGG 60 36421698 36421716 TCAGAACACTGAGTGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058605 ENSRNOT00000089106 1 1 1 60 3 103074713 103074733 TAGATGTGGTTGCTACATGTG 58 103074753 103074773 AGACATACTCTCCTTTCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056385 ENSRNOT00000086898 3 1 1 60 3 154846044 154846062 GGGAGAGGATACGGAAAGC 60 154846002 154846020 GGGTTTGGTAAGGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055153 ENSRNOT00000081568 3 1 1 60 X 125070520 125070539 GGACAGAGGCTATGTCTTCC 60 125070559 125070580 GGTTACTAATCATTCAGGTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057777 ENSRNOT00000090516 2 1 1 60 7 45060776 45060797 GTCACAGTTGAATCAGAAGGAG 59 45060818 45060836 CACAGGTGAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055833 ENSRNOT00000077393 3 1 1 110 7 46482810 46482828 GTCAGGAAGGATGTTTCCC 58 46482718 46482739 TCCATTACCACAAACTACTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000080722 1 1 2 80 5 47834594 47834613 CACTTTGAGACTTTCAGCAG 57 47834654 47844382 TGGTCAGATTGACTTATCGTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000058875 ENSRNOT00000090435 2 1 1 64 6 100454193 100454211 GCAGGCATACTGAAACTGG 59 100454239 100454257 GTTCATGTCACCCTTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004993.1 ENSRNOG00000042292 ENSRNOT00000064130 1 1 1 103 1 173347210 173347228 AAGAGCTCCTGGAACAGAC 59 173347294 173347315 AGTGGACCTGTTAGCATGAG 60 Novel Rattus norvegicus 81 AABR07063802.1 ENSRNOG00000059553 ENSRNOT00000078347 3 1 1 62 6 49401769 49401787 CCTTGTTGGAGGAAGTGTG 58 49401725 49401743 AGCCAGGCTTAGATTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055351 ENSRNOT00000089531 2 1 1 60 1 277058221 277058240 GTAGGTGGCAAAGAGGAGAG 60 277058180 277058198 AACGTCAGATGGTCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000049964 ENSRNOT00000064023 1 1 1 80 1 271231989 271233237 GAGCTATTCTGTAAGGTCCC 57 271233279 271233298 CTTCAGATCCGTACAGTCTC 57 Novel Rattus norvegicus 81 AABR07068746.1 ENSRNOG00000059493 ENSRNOT00000085020 3 1 1 60 9 117439517 117439536 CTGAAGACAAGCTTACCCTG 58 117439476 117439494 GGCCTGCTAAAGTAGGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058362 ENSRNOT00000080204 1 1 1 70 16 27270837 27270855 ATGAGGTTTATCCGAGGCG 60 27270785 27270803 CATGAAGCTACACCTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000058917 ENSRNOT00000083897 3 1 1 60 6 89737414 89737434 GGGAAATGTAATAGGGCTTGC 60 89737456 89737474 CAGGTACTGCAACATCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040715 ENSRNOT00000062468 3 1 1 60 10 86231433 86231452 GGTCAGGCCTAGTTAGTACC 59 86231392 86231411 TCAGTGTCTCTAGTCTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000048993 ENSRNOT00000075536 1 1 1 60 2 78170380 78170398 ACCACCAGGTTGTCTAAGG 59 78170419 78170440 TATCCTTGAACTTCTGTTTCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000061565 ENSRNOT00000079492 2 1 1 60 2 25747859 25747878 CTGAACTAGTGGACAGAGAC 57 25747900 25747919 CTGGGTTACAGAAGTAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057309 ENSRNOT00000091907 2 1 1 66 16 18063961 18063979 GTCTTCACTTTGGCAGCAC 60 18063913 18063936 CACAGTGGTCATCCTAATATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043085.1 ENSRNOG00000046982 ENSRNOT00000075454 1 1 1 111 19 19895928 19895946 CTAAGTCTGGTAGTGCCGG 60 19896021 19896039 ACTCTGACGTCTTGGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043085.1 ENSRNOG00000046982 ENSRNOT00000075454 3 1 1 114 19 19895925 19895943 GGGCTAAGTCTGGTAGTGC 60 19896021 19896039 ACTCTGACGTCTTGGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010944.1 ENSRNOG00000056299 ENSRNOT00000080951 1 1 1 60 2 155555893 155555913 CAAGTTTAGAAAGCAGTCTGG 57 155555935 155555953 GGCTTTCTTGGGAGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043456.1 ENSRNOG00000052028 ENSRNOT00000079270 2 1 1 80 19 28746510 28751432 ATCCATGAACAACAGGCCA 60 28746448 28746467 ATTGACATGACTGCCTCCTC 60 Novel Rattus norvegicus 81 AABR07043456.1 ENSRNOG00000052028 ENSRNOT00000079270 3 1 1 81 19 28746510 28751432 ATCCATGAACAACAGGCCA 60 28746447 28746466 AATTGACATGACTGCCTCCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057113 ENSRNOT00000084394 3 1 1 60 10 88896513 88896535 GATACAGAGAAGATTAGCATGGC 59 88896555 88896573 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057627 ENSRNOT00000084922 2 1 1 60 8 49163048 49163066 AGTTGGAATAGGAGCTTGC 58 49163090 49163108 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD95 ENSRNOG00000057012 ENSRNOT00000090622 2 1 1 60 10 34152291 34152309 GTGATGACCACAACATGCC 60 34152333 34152351 AGCTCAGAAACAGCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.4 ENSRNOG00000055877 ENSRNOT00000083044 2 1 1 60 1 1669199 1669217 GCATCAATGCAGAGCTTCC 60 1669157 1669175 GCCATGTTGAGAATGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096930.1 ENSRNOG00000046713 ENSRNOT00000075560 3 1 1 64 4 173988144 173988162 CAAAGCCTGAGAACGTGAC 59 173988188 173988208 GTATCTCCTGAGAAGCCTACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035203.1 ENSRNOG00000060198 ENSRNOT00000078541 1 1 1 60 12 6784069 6784089 CCTGTCCATTCTCAGAAAGAC 59 6780838 6784048 GGAATCACGGAAAGAGACTG 58 Novel DesignRelaxed Rattus norvegicus 81 7SK ENSRNOG00000058964 ENSRNOT00000086880 1 1 1 60 4 17842434 17842455 GTCAAGGGTATATGAGTAGCTG 58 17842474 17842494 GGACCTTCAATCTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049038.1 ENSRNOG00000060051 ENSRNOT00000085032 2 1 1 151 5 101301162 101301180 TTTCTCTGGTCTGGACAGC 59 101301027 101301045 CACATATCCTTCTGCACGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055550 ENSRNOT00000083038 1 1 1 60 10 74640535 74640554 AGAGAAGATTAGTGTGGCCC 59 74640494 74640515 AATATGGAACACTTCTCAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057885 ENSRNOT00000087387 2 1 1 62 10 86377939 86377958 CAACACGGAGAAGATTAGCA 58 86377896 86377916 GGAACACTTCTCGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053338 ENSRNOT00000086089 1 1 1 60 10 39414055 39414075 GATACAGATTAGCATTGGCCC 59 39414097 39414115 CTCTCAGAGGGCTTCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.1 ENSRNOG00000046746 ENSRNOT00000075018 1 1 1 73 17 43621454 43621472 TTCCTGGAGAACGTGATCC 59 43621395 43621413 TAGACCACATCCATGGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052059 ENSRNOT00000085361 3 1 1 62 10 26172404 26172422 CTGTGGGTGTGGTTTACTC 58 26172360 26172381 CTATATTTGGGACAATTGCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001035.1 ENSRNOG00000057721 ENSRNOT00000087018 3 1 1 60 1 35027347 35027366 TCCCTGTTGGCATTCTAGTG 60 35027305 35027324 CTCTGACACAACACATGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027753.1 ENSRNOG00000046334 ENSRNOT00000049182 3 1 1 84 17 43801852 43801870 TACAGGGCATCACTAAGCC 59 43801918 43801936 GTCTCCTCGTAGATGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000055961 ENSRNOT00000084941 2 1 1 60 10 92417397 92417416 TGCTAATAACCCACTGAGAC 57 92417356 92417374 CATCATGTTGCCACTTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2682.1 ENSRNOG00000051306 ENSRNOT00000076237 1 1 1 80 1 260645479 260678857 GTACAGTGACAGCACTTTGG 59 260645418 260645441 CATAGTCCATACCACATCATTAGC 59 Novel Rattus norvegicus 81 AABR07016577.1 ENSRNOG00000029052 ENSRNOT00000043218 3 1 1 61 14 104987834 104987852 CATCCGAAACGTCAAAGGC 60 104987877 104987895 TTTCTGACTCCAACAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059706 ENSRNOT00000083483 3 1 1 60 4 165493403 165493421 GTGCATCAGTATGTGGCAG 59 165493361 165493379 CGTGGGTGAGAATACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052674 ENSRNOT00000085834 3 1 1 60 4 145319923 145319942 GAGTTGGAATAGGAGCTTGC 59 145319965 145319983 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059976 ENSRNOT00000080033 2 1 1 60 10 89511801 89511819 AGTTGGAATAGGAGCTTGC 58 89511843 89511861 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 2 1 1 80 13 51937099 51939266 CATGTTGGGCGATTCTCAG 59 51939310 51939329 GCATATGTCCTCCTCTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD10 ENSRNOG00000055390 ENSRNOT00000079842 1 1 1 60 10 56273280 56273298 TGTTAACCTTAGCCCAGGT 58 56273238 56273256 TTCCCTGATAGGTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362027 ENSRNOG00000032825 ENSRNOT00000042688 2 1 1 60 10 38024744 38024764 TGAAGATGATCAGACAAGGCA 60 38024704 38024722 AAAGCTGGACAGTTGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cyss ENSRNOG00000030857 ENSRNOT00000044345 2 1 1 80 3 144428559 144428580 ATATGTTTGAAGACACAGGGTG 59 144427499 144428519 AGAGCAGAATTCATGCTCCT 59 Novel Rattus norvegicus 81 AABR07058423.2 ENSRNOG00000059053 ENSRNOT00000090876 2 1 1 82 7 116003786 116003805 ATTCGGTCTTCCCTCTCAC 59 116003722 116003743 AAGATTTCCTGAGGAAGGAGAG 59 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 1 1 1 64 1 165559995 165560013 AAAGTCAGCAGCTCAAGGA 59 165559947 165559967 TAGGTCCTCTTCCCTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060119 ENSRNOT00000090421 1 1 1 60 1 157987318 157987337 GTCACATGTGCATCTGTAGG 59 157987277 157987297 CAGAACACTGAATGTTGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056514 ENSRNOT00000077534 2 1 1 77 17 9247763 9247781 TAGAGGCATCGTAGGTGTG 59 9247704 9247722 AACACTGAGGTAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057065 ENSRNOT00000082117 1 1 1 64 17 31913591 31913610 TCAGTGCTGTATCACATGTG 58 31913546 31913564 ATACTGGGCAGACACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056342 ENSRNOT00000081473 1 1 1 60 2 236773997 236774015 CTTATCCATTGCACTCCGG 58 236774039 236774057 TCGAGTTTCCCACATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059221 ENSRNOT00000083903 2 1 1 60 2 167059681 167059700 CTAAAGGGATTGCAAAGGTG 57 167059640 167059661 TCTCTTCTCTGCTACCTATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058255 ENSRNOT00000087605 2 1 1 60 2 201153265 201153284 ATGTCAGGCACATTAGTAGG 57 201153224 201153242 CTGAACACTGAGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000053220 ENSRNOT00000083113 3 1 1 60 2 153754554 153754573 TGTCTGACACAATTTGAGCT 58 153754513 153754532 GAAGAGAACACCGGAATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052922 ENSRNOT00000082720 3 1 1 60 2 73246961 73246981 CGATGATCATTCCCATTAGGT 58 73247002 73247021 TTCCCAACAGGTTAAGTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060261 ENSRNOT00000080040 1 1 1 60 4 176170374 176170394 TTTACTCACAGAGGAGGACAG 59 176170334 176170356 CACACTCTAACAGAAGAGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043654.1 ENSRNOG00000027022 ENSRNOT00000059785 2 1 1 146 19 34204646 34204664 CTCTACAAGATCGTTCGCG 59 34204516 34204534 TGATGGCCATAAGAATGCG 58 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051566 ENSRNOT00000086936 2 1 1 60 17 13856926 13856944 TCAGAAACGAAGCAGACCA 59 13856884 13856902 TGTTCACAGGTGTGATCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052985 ENSRNOT00000078584 3 1 1 60 12 46248036 46248054 GGGTAAATGAGTGCTGTGC 59 46248078 46248096 CCTTTGGACCTTGAGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076830,ENSRNOT00000078786 2 2 4 60 19 17402078 17402096 GAGCCAGACCATTCTGAGG 60 17402036 17402060 GAAGAGACTTATCAGCATCAAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040749 ENSRNOT00000062502 3 1 1 60 3 160548729 160548749 TAGAAGCTAAGCACAAACGTG 59 160548689 160548707 ACTGGTATTCCCAGATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055913 ENSRNOT00000087875 3 1 1 60 1 198019471 198019490 GTTGGAATAGGATCTTGCCC 58 198019430 198019451 CCAGAAGTACTGCAATACTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054845 ENSRNOT00000087505 2 1 1 60 1 31163825 31163848 CTCAGAAGTACTATGTCACTTGTG 59 31163864 31163885 TAGGCTTAATCTCTGTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018191.1 ENSRNOG00000058716 ENSRNOT00000088793 1 1 1 80 15 46297120 46297138 ACCTTTCAGTCTTTGTGGC 58 46296221 46296321 CAGGGTAATATGCTGACGTG 59 Novel Rattus norvegicus 81 AABR07018191.1 ENSRNOG00000058716 ENSRNOT00000088793 3 1 1 80 15 46297122 46297141 GCCACCTTTCAGTCTTTGTG 60 46296224 46296324 GGTAATATGCTGACGTGCAC 60 Novel Rattus norvegicus 81 Rn60_14_0488.1 ENSRNOG00000051263 ENSRNOT00000077062 3 1 1 80 14 48633989 48634009 ATTGTGGTGAAAGTTGTCCAG 59 48630325 48633950 GAGTTGGAGCACTATAAACCTC 59 Novel Rattus norvegicus 81 AABR07068214.1 ENSRNOG00000061442 ENSRNOT00000080956 2 1 1 84 9 91004025 91004917 GCTTTGAACATGTGTTACCA 57 91004964 91004982 CCTTGTTCAAGACTCAGCT 57 Novel Rattus norvegicus 81 LOC100360296 ENSRNOG00000061094 ENSRNOT00000091278 2 1 1 80 X 73289765 73290560 TTTCTGGCGCATTCAAACC 60 73289703 73289723 TATTGATGTTTGACATGCCCG 59 Novel Rattus norvegicus 81 AABR07068018.1 ENSRNOG00000061280 ENSRNOT00000083389 2 1 1 80 9 77680044 77680067 GAGATTTCACCTCACATGCG 59 77679983 77680002 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 RGD1566337 ENSRNOG00000054790 ENSRNOT00000085431 3 1 1 60 2 194875439 194875458 GATCAAAGGCAGGTGTTGTC 60 194875398 194875419 CTGTGAAGATGAAATTCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d8b ENSRNOG00000054011 ENSRNOT00000080072 1 1 1 80 X 110944172 110944191 TCGAGACCTGGTTGTAAGAG 59 110944232 110944718 ATGTCATTAACAGCACCTGAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054023 ENSRNOT00000088608 2 1 1 60 1 253580255 253580273 CATAGAGGCATTGCTGGAG 58 253580291 253580315 TCTCCTCTACCATGTATTGATACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052342 ENSRNOT00000082488 3 1 1 61 14 32821249 32821271 CGATACAGAGAAGATTAGCATGG 59 32821210 32821229 GGAAGCCTCACGAATTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001497.1 ENSRNOG00000018935 ENSRNOT00000025594 3 1 1 60 1 47587948 47587969 CCATTTCTGAAATCAAGACCCT 59 47587864 47587885 TCTTCATCTTTCAGGGACTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044977.1 ENSRNOG00000048535 ENSRNOT00000074647 2 1 1 61 20 29280285 29280305 GTAGGGCTGGCTCTTATGG 60 29280242 29280261 TTGCCTTCACAGGTAATCAC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043249.1 ENSRNOG00000057493 ENSRNOT00000074744 3 1 1 81 19 26787995 26789905 AGCTCAACAACGTAATGAAGTC 59 26789944 26789965 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 AABR07017045.1 ENSRNOG00000060802 ENSRNOT00000082997 2 1 1 113 15 7400273 7400291 AGGAGAGGGAGAGGAAGAG 59 7399693 7399713 TAGACGGGAAACATAACTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC110387.1 ENSRNOG00000054854 ENSRNOT00000080741 2 1 1 60 1 196095416 196095435 AGTGTGGAGTTATAAGCCCT 58 196095457 196095476 TTCTGCCACTTCTCTAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055733 ENSRNOT00000081390 2 1 1 60 17 88088175 88088193 ACTGGTCTTCAGCCAAGAG 59 88088133 88088152 TATAGACTAGGGAGGTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Pramef20 ENSRNOG00000053942 ENSRNOT00000091592 3 1 1 89 5 162407715 162407734 TCCTTAAGCTGGAAAGCCTC 60 162407786 162410506 TCTTCACAGACCCAAGCAG 60 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000057377 ENSRNOT00000084436 1 1 1 60 12 7032843 7032861 GTTTGGAAAGGACTGGGAC 58 7032801 7032819 CTCTGTGGAATGGTTGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 3 1 1 74 1 165284443 165284465 CCCACTGATATTTCTAAAGCCG 59 165284500 165284518 GTAGAGCAGGAAAGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 3 1 1 65 5 107288841 107288863 GAAAGAAGCCACCAGTTGC 60 107288794 107288812 CTTTGAGTGCCAAAGAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015531.1 ENSRNOG00000049999 ENSRNOT00000072797 2 1 1 63 14 62157854 62157872 GAAAGGTTGTCCTCCAGGT 59 62157899 62157917 AGGTCACCAAGCAGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067762.1 ENSRNOG00000055383 ENSRNOT00000090305 1 1 1 80 9 61738618 61738648 CACGAATGGACAAAGGATGG 59 61738689 61738709 CCAGTAAACAACATCTCCCAG 59 Novel Rattus norvegicus 81 SNORD15 ENSRNOG00000055569 ENSRNOT00000079066 1 1 1 60 1 164436698 164436717 ACGATGACGAGTCAGAAAGG 60 164436657 164436675 CACAGAACATGGCACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142138.1 ENSRNOG00000056579 ENSRNOT00000089509 1 1 1 68 3 9540857 9540877 ATGGTTATTAAGGAGCATGGG 58 9540804 9540822 AGACAGTGTGAGGAACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054522 ENSRNOT00000082811 2 1 1 78 12 23689116 23689134 CACTTGGCAGCACATACAC 60 23689056 23689075 ATTTGCATGTCCTCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sap25 ENSRNOG00000051023 ENSRNOT00000084480 1 1 1 80 12 22126725 22126744 GAGACAGAAAGAAAGCAGCT 58 22126582 22126682 GGGAGAAAGAGGTACTGGG 59 Novel Rattus norvegicus 81 AC111647.1 ENSRNOG00000039863 ENSRNOT00000061202 3 1 1 60 4 25617032 25617052 GACATAGATCTTCAGTGCTGG 58 25616992 25617013 TGATTTCCTTGAGGTCTATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 1 2 2 60 X 66516293 66516494 GTTCCAAATGTAGTAGGAAGGT 58 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 U5 ENSRNOG00000052749 ENSRNOT00000090106 2 1 1 60 2 251829094 251829115 CAGATCGTATAAATCTTTCGCC 58 251829055 251829075 ACTCAGAATTGTTCCTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034592.1 ENSRNOG00000051951 ENSRNOT00000085422 1 1 1 80 11 80310034 80310056 AGATTTCACCTCACATGCG 58 80310099 80310118 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AC126899.1 ENSRNOG00000011065 ENSRNOT00000014753 2 1 1 81 19 44396506 44396524 CTCTGTGGACCAGTACCTC 59 44396293 44396461 ACCAATGGGAATGTGAGGA 59 Novel Rattus norvegicus 81 ENSRNOG00000053325 ENSRNOT00000087275 2 1 1 80 2 86963714 86964184 TGTGTTTCTGGGTCTTGCT 60 86964225 86964246 TTCTTCACAACTAAAGGCTCCT 60 Novel Rattus norvegicus 81 Foxred1 ENSRNOG00000060379 ENSRNOT00000091308 1 1 1 80 8 36406651 36406965 GGCATCTTATGGGTTGGAG 58 36406589 36406607 ATTGACTGGACCTTTCGAC 58 Novel Rattus norvegicus 81 AABR07059161.1 ENSRNOG00000051942 ENSRNOT00000082504 3 1 1 83 4 5848769 5904599 ATGCCTGCTGATGTATTTGTG 59 5904644 5904662 TGAATGAATCCCAGTGGCT 59 Novel Rattus norvegicus 81 SNORD25 ENSRNOG00000059148 ENSRNOT00000082509 1 1 1 61 1 224921638 224921656 TGCCCTATGATGAGGACCT 60 224921677 224921699 CAGAGTTACTTATCCTCACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004876.1 ENSRNOG00000018083 ENSRNOT00000024338 3 1 1 60 1 164807639 164807661 GAGGTAAAGTTCATGGTTCTCTG 59 164807681 164807699 ATCTTGGGAGTCTGACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061143 ENSRNOT00000083828 2 1 1 60 14 59631226 59631245 GACTCTGAATGTGCCAACTC 59 59631267 59631286 ATTATGCAGTTGAGTTGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061052.1 ENSRNOG00000056290 ENSRNOT00000086827 3 1 1 60 4 103258011 103258030 GTATCAACAGAAACCTGGGA 57 103257970 103257988 TTGCAAAGTTGACCCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054570 ENSRNOT00000085209 3 1 1 63 14 84570599 84570617 AAACTTGCTCACAACCTCC 58 84570640 84570662 TCATCGATACTGGGCTTATAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057098 ENSRNOT00000083604 1 1 1 60 2 53432092 53432112 GACAGAAAGCTTAACACTCCC 59 53432052 53432071 TAGAAGGTGTTAGGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000055902 ENSRNOT00000085824 2 1 1 60 14 17380808 17380827 TATGAAGCACAAGGAGAGGA 58 17380767 17380786 CACAGGTACCAAAGACATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000054760 ENSRNOT00000090961 1 1 1 60 1 47702698 47702716 TGAAGACCGATCCTCTGTG 59 47702656 47702674 GATTGAAGAGCCTGTTCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054619 ENSRNOT00000079500 2 1 1 60 10 33892524 33892542 TAGATGTGGTTGCTCTGCC 60 33892560 33892584 ACACTGATCATAGACATAACCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056932 ENSRNOT00000088475 3 1 1 60 1 114186061 114186083 CAAGTTAAGAAAGGGAAAGTGGG 60 114186023 114186044 AACAGCAAGCAACCTTATTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112624.1 ENSRNOG00000056438 ENSRNOT00000083155 2 1 1 60 14 43854597 43854618 GACTATGAAAGCCAGAAGATCC 59 43854558 43854578 GCATTTGTGTTCTCTTAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052709 ENSRNOT00000088516 2 1 1 60 2 2720457 2720476 TGCTGTGTCACATATGTGTC 58 2720416 2720438 ACTGAGTATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056872 ENSRNOT00000081231 2 1 1 61 14 77966039 77966057 GTAGGTCAGTAGGTGGCAG 59 77965996 77966014 TCACAGTTCAGAACACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118802.1 ENSRNOG00000057672 ENSRNOT00000089658 3 1 1 80 13 113764012 113764033 ATATTTGTCCTCTGCTTTGGTG 59 113764074 113764094 AGCCAAGAATTATTGCCGC 59 Novel Rattus norvegicus 81 AABR07004397.1 ENSRNOG00000030679 ENSRNOT00000048584 1 1 1 60 1 141214484 141214502 CAAGCAAATGGCTGGATGG 60 141214526 141214544 AGTTTATTGAAGCCCGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047744.1 ENSRNOG00000057999 ENSRNOT00000078109 2 1 1 61 5 45560756 45560774 CACCAACAATGGAGGAGTG 59 45560799 45560819 ATAGGTGACAGCAAATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053284 ENSRNOT00000092072 1 1 1 60 1 53584335 53584353 GTTTCTCATTGCGCTCTGG 60 53584293 53584311 GTGCATTCAGCACATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059632.3 ENSRNOG00000061046 ENSRNOT00000091075 2 1 1 80 4 28224617 28224636 ATCCCAGACCTTCAGTTGTC 60 28224436 28224575 TGAAGATGCAGTAGAGCCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000051626 ENSRNOT00000080980 1 1 1 60 4 31165158 31165176 GAGAAGATTAGCATGGCCC 58 31165200 31165218 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000061657 ENSRNOT00000077629 1 1 1 95 1 282154359 282154377 GCACATTTCATTGACCTGC 58 282154282 282154303 GCAGTTACTCTGCTAATTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000061657 ENSRNOT00000077629 2 1 1 97 1 282154360 282154379 CTGCACATTTCATTGACCTG 58 282154282 282154303 GCAGTTACTCTGCTAATTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059822 ENSRNOT00000077295 3 1 1 60 2 74938940 74938958 GGTCAGTCTCATCCATTGC 58 74938898 74938921 TCCTAATATCGAGGAAACTTCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029918.1 ENSRNOG00000057831 ENSRNOT00000080593 2 1 1 80 10 60199586 60199607 ATTGCTCAAGTTGTGTTCTG 57 60199648 60199668 AATGGGATGACCATAATGAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054062 ENSRNOT00000080968 1 1 1 60 2 248718696 248718717 TACAGAGAAGATTAACATGGCC 58 248718657 248718678 TGGATCCCTTCACAAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055115 ENSRNOT00000079551 1 1 1 60 5 5601716 5601735 CCTTAAGTGCAGAGTCAAGG 58 5601675 5601694 GACTGAAGACTGATCCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015719.1 ENSRNOG00000005077 ENSRNOT00000006734 3 1 1 60 14 72259802 72259822 TCCAGGTGTTGAATAATCCTC 58 72259842 72259862 ATAGAGAAGGATGACCCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060812 ENSRNOT00000090190 1 1 1 60 2 265810693 265810711 TGCTAAATTCAGCAGCACC 59 265810735 265810753 GGGCCTTGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054684 ENSRNOT00000084972 2 1 1 60 5 91360494 91360512 GTGTCAGTAGGTGGCAGAG 60 91360536 91360554 GTTCAAGGATCAGAACGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0428.1 ENSRNOG00000046298 ENSRNOT00000022314 1 1 1 80 9 43145804 43159211 ACCACAAGGTCTGCTATCTG 60 43145743 43145762 GATCGGGAGTAATGTCCTGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058717 ENSRNOT00000090801 1 1 1 60 14 81845101 81845120 GACTAAGACCAGAAGGACAC 57 81845060 81845078 CGAATCTGCATGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061255 ENSRNOT00000090995 2 1 1 60 1 85051969 85051988 TAAACGTGAACGACACAGAG 58 85052010 85052029 CTCAAGTTTGAGAGGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000086063,ENSRNOT00000058552 3 2 5 85 2 123616610 123616631 CATGCTTACCATTGATTACACC 58 123616674 123617702 CTTCCATTTCTGACAATGACTG 58 Novel Rattus norvegicus 81 LOC103694557 ENSRNOG00000052020 ENSRNOT00000085338 1 1 1 80 Y 801795 801906 AGACTACTTTAAGACAGAGCAC 58 801944 801965 GGCATAAAGAAGGAATAGAGCA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055772 ENSRNOT00000077418 2 1 1 63 2 54392851 54392870 TGTGTCAATAGGTGACAGAG 57 54392894 54392914 TCAGATGCTCAAAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055772 ENSRNOT00000077418 3 1 1 64 2 54392834 54392852 GGCTGCTGTGTCATATGTG 59 54392875 54392898 CACTGAAATTACTCATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014756.2 ENSRNOG00000047135 ENSRNOT00000072268 2 1 1 63 14 30326697 30326715 GCAGATGTGTTTCCATTCC 57 30326652 30326673 GAATACTGCAAGAGCAATAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032265.1 ENSRNOG00000059754 ENSRNOT00000088527 3 1 1 93 18 58097188 58097207 TTGGTCAAGGAAATCAACCC 58 58096359 58097132 TGTGAGCCTAGAGCTTGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059986 ENSRNOT00000083456 1 1 1 60 6 21808911 21808933 GGAACGATACAGAGAAGATTAGC 59 21808873 21808891 CTTCAGGAATTTGCGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054419 ENSRNOT00000077353 3 1 1 67 6 75614298 75614316 TTATCCATTGCACTCCGGA 59 75614347 75614365 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000055559 ENSRNOT00000088779 2 1 1 60 14 30523638 30523658 CATAAGTTAATGCTTTGCGGC 59 30523598 30523617 CTCCTGAAACCCAAGATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045043 ENSRNOT00000070310 2 1 1 63 10 89437342 89437360 TGGAAGTTACGCAGGATGG 60 89437386 89437405 TATGACATTGGTGCCTTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000059820 ENSRNOT00000086696 1 1 1 60 1 165632861 165632879 GTAAGACCACACTCCACAG 58 165632819 165632840 GGCCACAATATAGTAATGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000058441 ENSRNOT00000086402 2 1 1 61 1 228177904 228177924 CCCTTGACAAGAATGGAAGAG 59 228177944 228177965 CTGCACTAAGCATTTGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055813 ENSRNOT00000083091 1 1 1 60 2 23481227 23481246 TTGCTACTGGTAAAGCAGTC 58 23481269 23481287 GGTTATTTGTGCACACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051388 ENSRNOT00000085533 1 1 1 60 2 231309308 231309326 TAGTAGGTGGCAGTGAGGA 59 231309348 231309368 GATGTTCCTAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017238.1 ENSRNOG00000059383 ENSRNOT00000091142 2 1 1 60 15 19109039 19109059 GATCTCTATGGTTGGGAAGTC 58 19108999 19109022 CACCACCTTCATAAAGTGTATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114845.1 ENSRNOG00000058760 ENSRNOT00000082637 1 1 1 72 14 22785248 22785266 TCCAAGCTCAAAGGACCAG 60 22785190 22785212 CCATCTCTTTCTTTAGGTTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA73 ENSRNOG00000061302 ENSRNOT00000087596 1 1 1 60 1 157541779 157541798 TTGTCCACCTGCATATTCGT 60 157541738 157541758 TTTCCTCCTCAGTCATTGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057299 ENSRNOT00000091948 1 1 1 60 10 73986142 73986162 CATGCTTGGGAGGTTAAAGAG 59 73986183 73986202 GCACGACTACTCCAGTATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057299 ENSRNOT00000091948 3 1 1 60 10 73986112 73986131 ACTATTCTGTGCATGTCCCT 59 73986151 73986172 AATGACTGTCCTCTTTAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009638.1 ENSRNOG00000030152 ENSRNOT00000043933 2 1 1 60 2 106702866 106702886 CACAACGGTTAAGAACAAGGA 59 106702826 106702847 CTTCTCAGAAACATAGATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060947 ENSRNOT00000085467 1 1 1 60 2 161564698 161564717 ATCATGGACAGTTTGAACGC 59 161564740 161564758 TCAGACAGGTGTAGTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000052127 ENSRNOT00000087035 1 1 1 60 1 88419052 88419071 TGCCATAGAAACTGTCATCC 58 88419011 88419029 CTGTGAGTAGAGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000052127 ENSRNOT00000087035 3 1 1 60 1 88419094 88419112 ATTCACTGCCTGTTCTACC 57 88419052 88419072 GGATGACAGTTTCTATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000046264 ENSRNOT00000073425 1 1 1 60 18 30425985 30426006 AGACCATAATCAGCATCTTCAG 58 30426027 30426045 ACCACCTTTCCATTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031138.1 ENSRNOG00000030649 ENSRNOT00000043882 2 1 1 60 18 1412405 1412425 GGATGATGGTGAATACAACCC 59 1412365 1412384 ATACTCAAACTGGTCAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.2 ENSRNOG00000052769 ENSRNOT00000089249 2 1 1 156 X 134021347 134021482 AAGACCGAAGGTGAGAACG 60 134021197 134021218 GGCTAGGGAGTCATACATTCTC 60 Novel Rattus norvegicus 81 SNORA21 ENSRNOG00000058946 ENSRNOT00000084089 1 1 1 60 1 190917942 190917960 CACTGAGCTGTCAAGAAGG 58 190917900 190917918 TTATGTTGCCACTTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053305 ENSRNOT00000083473 2 1 1 62 1 254469982 254470001 CGAGGCAGAGAAGATTAGCA 60 254469939 254469959 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013591.1 ENSRNOG00000060967 ENSRNOT00000083768 1 1 1 67 2 245325950 245325968 AGGAGGATCATCGCTTCTC 59 245325901 245325920 AATGGATACCTGATCCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055208 ENSRNOT00000077260 1 1 1 60 6 43246852 43246874 GGAACGATACAGAGAAGATTAGC 59 43246894 43246912 CTTCACAAACTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000057181 ENSRNOT00000090452 3 1 1 60 3 112236300 112236320 ACACATTTAAAGCCAGACACC 59 112236260 112236281 AGCATATCAGCCATCTTAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051806 ENSRNOT00000088975 3 1 1 60 9 16017727 16017746 CTTGGTTTAGCTGACCTGTG 59 16017769 16017787 CTCAAGCAGAACAGTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045211 ENSRNOT00000070478 1 1 1 60 5 115698803 115698826 CTCTTAGAAGCTAAGCAAGATCAG 59 115698845 115698863 AGCTATCACTTGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126071.2 ENSRNOG00000053760 ENSRNOT00000087251 1 1 1 97 10 15408725 15408746 CTTTACAGGAAGGCAGAGTG 58 15408646 15408664 GCAAGGATGGCCTAATTCC 59 Novel Rattus norvegicus 81 AC126071.2 ENSRNOG00000053760 ENSRNOT00000087251 2 1 1 98 10 15408727 15408747 GCTTTACAGGAAGGCAGAG 58 15408646 15408664 GCAAGGATGGCCTAATTCC 59 Novel Rattus norvegicus 81 SNORA24 ENSRNOG00000052644 ENSRNOT00000085529 1 1 1 60 1 36350990 36351009 TCTTGTTATTGGCAAAGCTG 57 36350949 36350969 TTACTTGCTCAAGTCAGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060811 ENSRNOT00000079752 1 1 1 60 5 151858779 151858801 GGAACGATACAGAGAAGATTAGC 59 151858821 151858839 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099183.1 ENSRNOG00000055357 ENSRNOT00000080153 1 1 1 223 10 87503533 87503551 TAGCTTCTGTGGCTTTCCC 60 87503292 87503310 TAGTCTGACAGCAGGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053189 ENSRNOT00000082911 2 1 1 60 5 35110568 35110589 AACAGTAAGTGGCAGATAAGAG 58 35110529 35110547 TTCACAGGTCAGAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058967 ENSRNOT00000079953 1 1 1 60 1 174774312 174774332 CATACCCTAATGTTGGAACGA 58 174774354 174774372 GTGTCATCCTTGTGCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065531.2 ENSRNOG00000047180 ENSRNOT00000074902 1 1 1 62 6 133709575 133709593 GTGCTAATTGTGGCTGAGC 60 133709619 133709637 ATCACCAGGAGATCATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000056925 ENSRNOT00000087467 2 1 1 61 1 216764242 216764260 CCTGGAAGGAAATGAGCAG 58 216764285 216764303 TGCTGTCTGAAGGTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017798.2 ENSRNOG00000060147 ENSRNOT00000089064 2 1 1 80 15 31178373 31178572 GGCTCCAATTAAACTGGGT 58 31178616 31178634 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052986 ENSRNOT00000084926 3 1 1 99 7 70701303 70701323 CTTACTTCACAGCACATTCAC 58 70701224 70701243 TGGAACCTATTCCTGTACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 1 1 1 60 1 142027778 142027798 CTTCCTAAGGCTGCTACCT 59 142027822 142027840 CTGGCTCAGTAGTACAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056380 ENSRNOT00000077501 1 1 1 69 4 101489068 101489086 ACCACCTACAGGTATAGCA 57 101489017 101489035 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056613 ENSRNOT00000082781 3 1 1 60 14 64848289 64848308 GTTGCTACATTTGACATCCC 57 64848331 64848349 CCTAGCCAACAAGATCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057210 ENSRNOT00000088875 2 1 1 60 6 75099455 75099476 ATATAACCACAGAGCTTAGGCA 59 75099494 75099515 CCTTAAGAGATCCTACCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000056397 ENSRNOT00000079816 3 1 1 91 1 224923861 224923879 CTTCCTGTCCTAGCTCCAG 59 224923934 224923952 TCAGACAGTTCCTTCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056459 ENSRNOT00000081853 1 1 1 65 14 86398225 86398244 TACTAGCACTGGAAGCACAC 60 86398179 86398197 ATGAATTTGCACGTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD86 ENSRNOG00000051605 ENSRNOT00000086450 3 1 1 60 3 122806420 122806438 TACAGTGATGGCTGACCAG 59 122806460 122806480 GCCATCACTCCCATAGTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061536 ENSRNOT00000089967 2 1 1 60 5 150529766 150529784 TACGACTTCTCAGAGTCCC 58 150529724 150529742 CTGCATGGTTTGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003017.1 ENSRNOG00000040273 ENSRNOT00000013741 2 1 1 60 1 93242228 93242249 ATTACCACTTGAAGAGGAACCA 60 93242264 93242288 GTCCATAATTTATCCAGGTTGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0843.1 ENSRNOG00000051354 ENSRNOT00000076759 1 1 1 80 13 79330641 79339739 TGATCTGGATGTGTCTCTGTG 60 79339781 79339799 ACCAGGCAGGAACTAACTG 59 Novel Rattus norvegicus 81 AABR07052085.1 ENSRNOG00000005951 ENSRNOT00000007800 3 1 1 60 3 35748878 35748898 TGGCAATTACAACAACCAGTC 60 35748920 35748938 GCTTCCAAAGTTTCCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056982 ENSRNOT00000088733 1 1 1 68 4 72423076 72423095 GCTTTGGCAGTACATATCCT 58 72423126 72423144 TAATACTTGCAAAGGGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006727.1 ENSRNOG00000052057 ENSRNOT00000082874 3 1 1 60 1 250300927 250300945 AACTGGAGGAAGACTTTGC 58 250300885 250300904 TCCAGCTCTTTGATCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060253 ENSRNOT00000083836 1 1 1 60 13 34432180 34432198 AGTAGGTGGCAGAAAGGAG 59 34432138 34432159 ACATATTTACGGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059323 ENSRNOT00000089011 2 1 1 60 1 188590265 188590286 AATAGAACAATCTGCATGCCAG 60 188590226 188590244 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000054091 ENSRNOT00000083081 1 1 1 60 20 5153032 5153050 TGGGTTTGGAAAGGTCTGG 60 5152990 5153008 TGTGGGATGGTTGATCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043823.2 ENSRNOG00000043145 ENSRNOT00000067808 2 1 1 127 19 42436473 42436493 AAAGACAGCACTAGTGCAG 58 42436584 42436604 AGTTATGGAAACCCATAGCAG 58 Novel Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 2 1 1 79 20 18046144 18046162 GTGTTTGCGTCTTTCATCC 58 18046204 18046355 TGAGCTAGGAAGACCTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053378 ENSRNOT00000086822 3 1 1 60 13 63561848 63561870 GATACAGAGAAGATTAGCATGGC 59 63561889 63561908 GAACGTTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000077061 1 1 2 80 X 73543990 73544011 TCAGAACACTGTGAAACTTCAG 59 73544051 73552421 CATCAAGCTTTGGACATGGT 59 Novel Rattus norvegicus 81 AABR07015320.1 ENSRNOG00000058176 ENSRNOT00000083767 2 1 1 105 14 51960286 51960307 AAGAGGCTTTCTCTACCAAGAG 60 51960373 51960418 TAACCTACCGCCTGTTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053788 ENSRNOT00000079577 1 1 1 60 20 3022268 3022288 CTAGAACTTCCAAACAGGCTC 59 3022306 3022328 AGACTTCACCTCATAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056618 ENSRNOT00000078724 1 1 1 60 20 38742533 38742551 CTCCTCACTCACTGTTCCA 59 38742491 38742509 TTCAGTCATCTTCCACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052808 ENSRNOT00000085212 3 1 1 60 9 64894156 64894174 CACATGCACTAAACCTGGA 58 64894197 64894216 CGTGTCATCTGTAGGTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054444 ENSRNOT00000084406 1 1 1 60 20 47554029 47554050 CTCCCTGGAGTATAGAACAGAC 59 47553990 47554008 GAAGGGTAGCCACTCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 1 1 3 73 X 73496702 73496720 GTATTGAAGCAGAGCGTCG 59 73496757 73501442 TTTCTTTACACCACGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054248 ENSRNOT00000089641 3 1 1 60 20 20175364 20175382 CTTCAGCTATGACAGCGTG 59 20175322 20175343 GAAGTACTGTATAACCCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052846.1 ENSRNOG00000051973 ENSRNOT00000084116 3 1 1 60 3 79090456 79090477 CATTCTCCCATGTACTTCTTCC 59 79090417 79090437 TAGAGGAGTAGCAGATTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058881 ENSRNOT00000083445 1 1 1 60 9 66499225 66499247 GGTGTTGTTCTTACATCAGTCAG 60 66499265 66499285 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061072.1 ENSRNOG00000056179 ENSRNOT00000084036 1 1 1 80 4 103568774 103569122 GGATTCCAGTTTCCAGAAGTG 59 103568714 103568734 TAGAAGCCTGATCTCCAAGTG 59 Novel Rattus norvegicus 81 AABR07061072.1 ENSRNOG00000056179 ENSRNOT00000084036 2 1 1 81 4 103568774 103569122 GGATTCCAGTTTCCAGAAGTG 59 103568713 103568734 ATAGAAGCCTGATCTCCAAGTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054365 ENSRNOT00000089363 1 1 1 60 5 155389136 155389154 AGAGGCAATGGTTAGGCTC 60 155389176 155389196 CTCTCAGGCTCATTTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044824.1 ENSRNOG00000057124 ENSRNOT00000082888 1 1 1 80 20 22420994 22421012 ATGGCAGGGATGAAATGAG 58 22420929 22420952 AAGATAAACTGTATGCCCTCC 58 Novel Rattus norvegicus 81 AC094647.2 ENSRNOG00000056060 ENSRNOT00000084785 3 1 1 87 1 251633933 251633954 ACACTCAGAGACTCAAATACAC 58 251634001 251634020 TGTGTATATGCATGCGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056116 ENSRNOT00000086334 1 1 1 60 3 143142630 143142648 ACTCTGAATGTGCTGACCC 60 143142669 143142690 CAAATTATGCAGTCGAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056116 ENSRNOT00000086334 2 1 1 60 3 143142629 143142647 CACTCTGAATGTGCTGACC 59 143142668 143142689 AAATTATGCAGTCGAGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014836.1 ENSRNOG00000002127 ENSRNOT00000002894 3 1 1 62 14 33596973 33596991 CCCAGAGATCACAGAAGGT 58 33596928 33596948 AAATTGTAAGCGCAGTGACAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA67 ENSRNOG00000058929 ENSRNOT00000087868 3 1 1 60 13 78079656 78079674 AAGGTGATTCCCTCTCCAG 58 78079614 78079633 CTTCCAAGGTGCTACATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050378 ENSRNOT00000074028 2 1 1 60 18 29968535 29968554 TTAGCCCAAGTCTTACACCC 60 29968577 29968595 TCTCCAACCAGTTTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061840 ENSRNOT00000083001 2 1 1 64 14 49391766 49391786 AGTATAAGAGTAGCTCCCTGC 59 49391806 49391830 CTACATTCCTACAATGGATCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051508 ENSRNOT00000078401 3 1 1 60 5 41320718 41320739 CGATACAGAGAAGATTAGCCTG 58 41320760 41320778 AACGCTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054915 ENSRNOT00000083685 1 1 1 60 1 168652599 168652617 CTGTTGGTTTCAAGCAGAC 57 168652557 168652578 TTCAGGTTAGCCAATAAACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055560 ENSRNOT00000091141 3 1 1 60 1 101122230 101122250 CTGTGATGAGCAATAATCACC 57 101122190 101122209 CATGGGTTGATCTCACAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059610 ENSRNOT00000084040 2 1 1 60 10 46960678 46960699 GTAATTTACACAGCCAGACACC 60 46960718 46960738 CGTGATCAGCCATCTTAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056256 ENSRNOT00000080659 3 1 1 60 10 89539678 89539696 AGTTGGAATAGGAGCTTGC 58 89539719 89539738 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000052856 ENSRNOT00000091639 3 1 1 60 10 74301987 74302006 GCAACCCTACAGAAACATGG 59 74301946 74301966 AGGGAAATAATCAGACTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060756 ENSRNOT00000078115 3 1 1 62 3 51030736 51030755 CAATGAGGTTTATCCGAGGC 59 51030693 51030711 GTGAGGGCCTAGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000053634 ENSRNOT00000088281 2 1 1 60 13 77065436 77065457 ATCCTACATAAACATGGAGGTC 58 77065478 77065496 GAACGATCAGACTTAGCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ct55 ENSRNOG00000027899 ENSRNOT00000031815 1 1 1 80 X 73525474 73525494 TTTCGTGCCATCTTTCAAAGG 60 73523163 73525436 TATGGTATCATCTTCCAAGAGCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054387 ENSRNOT00000090469 3 1 1 62 10 76205601 76205619 AGAGAAGATGAGCATGGCC 60 76205645 76205663 AAATATGGAACGCTCCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059657 ENSRNOT00000080495 3 1 1 61 10 74778225 74778249 TACTAGAGAAGTTTCTCTGACTGTG 60 74778268 74778286 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047580.1 ENSRNOG00000043726 ENSRNOT00000068993 1 1 1 63 5 38293100 38293118 CAATGTTTGACAGGCCCAG 59 38293142 38293163 ACAGAGTCAAGCACAAATACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049466.1 ENSRNOG00000053013 ENSRNOT00000077106 2 1 1 69 5 122136510 122136528 AAATAGCAGTTCCGTGCTG 59 122136562 122136580 CTGGCTTCTACTACAGCTG 57 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051783 ENSRNOT00000091219 2 1 1 87 3 147326053 147326071 TGACTGTGACACCTGTCAC 60 147326122 147326140 TTTGAGAGGGAGGAAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060131 ENSRNOT00000087108 1 1 1 60 20 9465070 9465093 GACTGAAGTTAGAACGATACAGAG 59 9465033 9465051 AATTTGCATGCCATCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053018 ENSRNOT00000078983 3 1 1 62 10 37419644 37419663 AAACCCAGGATTCTTTCCTC 58 37419688 37419706 CCAAAGAGGCTGTTGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052426 ENSRNOT00000084497 3 1 1 60 7 109352424 109352442 CAGTCAAAGAGGACAACCC 58 109352382 109352404 TCATATACCCTTGACTGAAGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002564.1 ENSRNOG00000022227 ENSRNOT00000029823 2 1 1 60 1 77111795 77111816 TGCATCCTTAACTGAGAATGAG 58 77111836 77111855 GTTCAAGTCCAACTTGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000059556 ENSRNOT00000087808 2 1 1 66 13 103192517 103192535 AAAGTGTTGAGTTCAGCCC 58 103192563 103192583 CAGCTTCAATGTTCCAAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD83 ENSRNOG00000061767 ENSRNOT00000088691 1 1 1 60 20 4817612 4817631 ACATGATGTTTGCAATTGGG 58 4817571 4817591 GTGATAGATAAGGGTCAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050530.1 ENSRNOG00000050867 ENSRNOT00000075406 2 1 1 88 5 168474712 168474731 CGGTCGAGATCAAGAAAGGA 60 168474783 168474806 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000077046 2 1 2 85 2 157070076 157070509 CAATTCTGGACATGCTGTACC 59 157070011 157070031 GCACAAAGTTATACTCGGAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060875 ENSRNOT00000087309 3 1 1 60 1 69687349 69687373 GAACAGAATGTATTGGGAGATACTG 60 69687388 69687409 TCTACTAGGGAATGTGTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043978 ENSRNOT00000069245 3 1 1 60 18 32756123 32756144 TCTGATCTCAGAAGCTAAACAG 58 32756084 32756103 TCCAAGTTGTGGGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000054041 ENSRNOT00000078163 1 1 1 60 15 4158934 4158952 AGTGCTTTGTTGCCTTTGG 60 4158892 4158912 GTAGAACTTCCTGATTCGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042302.1 ENSRNOG00000057365 ENSRNOT00000091082 2 1 1 60 X 152224778 152224797 TTTGCAGAGGAAACTGAGAC 58 152224737 152224757 CACTTACTTCTTTGCGATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057223 ENSRNOT00000087136 2 1 1 60 X 10460335 10460358 CGTCAGTTACAGATTAAACTCCTG 60 10460373 10460395 GTCAAGTACAGTAGTAAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069336.1 ENSRNOG00000054772 ENSRNOT00000083752 1 1 1 86 8 17694319 17694337 TTCAGGTCAGACAACACTG 57 17690999 17694269 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052403 ENSRNOT00000080653 3 1 1 72 13 71532605 71532623 AAAGTATTGCAAGTGCGGC 60 71532551 71532573 ATAGACATGACCTCTTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060279 ENSRNOT00000091836 2 1 1 65 13 65288983 65289001 GACTGCTGTGTCACATGTG 59 65288936 65288956 ACATTGAGCATAAACAGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000053776 ENSRNOT00000084844 1 1 1 60 19 1480539 1480560 ATACCCAATACATCCTGATCTC 57 1480500 1480519 CATCCAAGTACTATCCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061163 ENSRNOT00000089593 1 1 1 67 5 120096116 120096134 ATGAGGTTTAGCCATCGCA 60 120096163 120096183 GTTGAGTTTCCTGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061163 ENSRNOT00000089593 3 1 1 68 5 120096116 120096134 ATGAGGTTTAGCCATCGCA 60 120096163 120096184 TGTTGAGTTTCCTGAATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021706.1 ENSRNOG00000049253 ENSRNOT00000074216 3 1 1 60 13 86733173 86733191 AACAGGTCACCTGATGGTG 60 86733212 86733233 ACAACTCATAAAGGCTGAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061759 ENSRNOT00000090807 1 1 1 60 15 45810432 45810453 GAAAGAGGCTATGTCTACACTC 58 45810393 45810414 AGACTACTGATCACTCAGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044080.2 ENSRNOG00000057601 ENSRNOT00000079469 1 1 1 81 19 56443735 56443753 TACCCAGAAGTCTCAAGCC 59 56443799 56443820 TTTGACACGGGAAAGAAGAG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045106 ENSRNOT00000070373 2 1 1 60 19 35035190 35035211 ATCTAGTCTGATCTCAGATGCT 58 35035232 35035250 ACATATCCCATCCAAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060504 ENSRNOT00000080592 3 1 1 60 18 48672947 48672969 GATACAGAGAAGATTAGCATGGC 59 48672989 48673007 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057539 ENSRNOT00000090401 3 1 1 60 6 52873617 52873635 CACATCTGCATCGATAGGT 57 52873659 52873677 GTCAGAACACTGAGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058155 ENSRNOT00000083775 2 1 1 74 19 21125928 21125946 TGTAGGTATGGCTGCTGTG 60 21125978 21126002 ACACTGAGTGTAGATATAGCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060510 ENSRNOT00000083721 1 1 1 60 5 127646215 127646236 CGATACAGAGATGTTAGCATGG 59 127646176 127646195 GAACGCTTCACAAATGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059935 ENSRNOT00000077680 1 1 1 60 18 25084057 25084075 AGTGGATATGGTGGTCTGG 59 25084098 25084117 CAGTTCAGCTGAATCAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058713 ENSRNOT00000091074 1 1 1 60 20 13149998 13150019 AATAAGGAGACGATTAGCATGG 58 13149959 13149979 GGAATGCTTCACGAATTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052908 ENSRNOT00000081038 1 1 1 61 7 140132879 140132897 TTCAAGCAGACGCCTAGAG 60 140132836 140132854 CTGTTGAAGTCCAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058091.1 ENSRNOG00000048680 ENSRNOT00000074578 1 1 1 61 7 99735413 99735435 CAGTACAGTATAGCACAGTACAG 58 99735453 99735474 TGTGCTGTACTATACTGTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 2 1 1 74 6 139660496 139660624 AAAGGTGTCCAGTGTGAGG 60 139660440 139660458 GAGTTTCAGGGACCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC135285.4 ENSRNOG00000060386 ENSRNOT00000077339 3 1 1 60 18 28355452 28355471 GTATTGCATCCCTGAGAGTG 58 28355494 28355512 GTTCGCACCTAGACTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052263 ENSRNOT00000086199 2 1 1 67 4 55633611 55633629 CTTATCCATTGCACTCCGG 58 55633562 55633580 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109837.1 ENSRNOG00000053934 ENSRNOT00000073331 1 1 1 81 15 110431850 110431872 TCACCTCACACCAGAATGG 59 110431787 110431806 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 SNORA53 ENSRNOG00000056599 ENSRNOT00000080363 1 1 1 60 7 31818142 31818161 GTTGGTTGTACAGTCAAAGG 57 31818101 31818121 ACATGCAGGTGTATTAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA53 ENSRNOG00000056599 ENSRNOT00000080363 2 1 1 60 7 31818091 31818110 ACCTGCATGTTAGTCCTCAG 60 31818050 31818070 GTAACACATGACAGCATAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055100 ENSRNOT00000087935 2 1 1 60 7 45339163 45339184 TATATCAATCAGGGACAGAGCA 59 45339204 45339223 AGTCAGTTACCAAGCTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065676.1 ENSRNOG00000056495 ENSRNOT00000084131 3 1 1 105 6 139177235 139177339 ATTTCAAAGCTGTCTCCTGTC 59 139177406 139177424 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056827 ENSRNOT00000086094 3 1 1 60 18 58972851 58972873 CATATCCTAAAGTTGGAAGGAGG 59 58972893 58972911 GTGTTGTTCTTGCACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068274.1 ENSRNOG00000053030 ENSRNOT00000081131 2 1 1 69 9 94634013 94634031 AATGCAGGTACCAAACCCA 60 94633962 94633980 GTGTGCTCTGGGAAGTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127640.1 ENSRNOG00000056331 ENSRNOT00000088472 1 1 1 82 1 75461890 75462110 CGGGACCACAGAAATAGCA 60 75461826 75461844 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034498 ENSRNOT00000052621 2 1 1 60 10 18117433 18117452 AGAAGCTAAGCAGGATCAGG 59 18117392 18117410 CTGGTATTCCCTGGTGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061787 ENSRNOT00000078826 1 1 1 60 X 113757283 113757302 GTCGCATGTGCTTTGATAGG 60 113757242 113757266 CAGAATACTGAGCATAGAAATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060254 ENSRNOT00000086107 2 1 1 70 3 88742404 88742423 ATCTGAGGCACTATTACTGC 57 88742456 88742474 AAGAGGCTTACCAGTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039202.1 ENSRNOG00000041435 ENSRNOT00000063188 1 1 1 60 X 71470011 71470032 CCTTGAACTCAAGAGATCTACC 58 71469972 71469990 GTGCATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000051558 ENSRNOT00000085113 1 1 1 60 3 154973557 154973575 GAGTCAATCCCAGTTGGTG 58 154973599 154973617 AGTGCAGTAGTGAGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057678.1 ENSRNOG00000024507 ENSRNOT00000037006 3 1 1 70 7 83803063 83803081 GTACCTCCTGACAGTCTCC 59 83803117 83803135 TTTGACTCAAAGGAGCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000056920 ENSRNOT00000080312 3 1 1 77 18 75067004 75067022 GAGATACCGTGATCACGGA 59 75067063 75067081 CAAGTTTGGGTCAGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055443 ENSRNOT00000088477 2 1 1 60 X 139963335 139963355 CATTGCAAGGATGAAGATGAG 57 139963295 139963313 ATGGCTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032057.1 ENSRNOG00000061300 ENSRNOT00000091133 1 1 1 73 18 44909129 44909147 GTTATTGAGCACGGTGTGC 60 44909074 44909092 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.1 ENSRNOG00000031313 ENSRNOT00000042660 1 1 1 60 10 34356067 34356085 CTGGTAACTTACGTGCCTG 58 34356109 34356127 TCTCATCCACATTGACCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.2 ENSRNOG00000061459 ENSRNOT00000087987 2 1 1 60 15 35844377 35844395 CTACTGTTGTTCCCATGCT 58 35844417 35844437 ACACTGACATCCTTATTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055806 ENSRNOT00000087435 1 1 1 60 6 980369 980390 TTATGCGTATGCATATCTTGCC 59 980409 980429 AAGGGTATTTCATGCATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121471.1 ENSRNOG00000053656 ENSRNOT00000080873 2 1 1 80 4 163644175 163644194 ACTCCCTCAACAGACAACAG 60 163642500 163644132 CTTGTCTGCCTTTGTGCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054918 ENSRNOT00000080858 3 1 1 61 6 79057969 79057989 GAACGATACAGAGAAGAAGCA 58 79058012 79058030 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037447.1 ENSRNOG00000051689 ENSRNOT00000089850 3 1 1 60 X 20846141 20846161 TCTTTGATCCTGTCCAGTAGG 59 20846101 20846122 GTGAGAAACATTTCTTCAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034905 ENSRNOT00000053028 1 1 1 60 18 78818886 78818904 ATCTCGGAAGCTAAGCAGG 59 78818928 78818946 GTTTCCCTCCTTTCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034905 ENSRNOT00000053028 2 1 1 60 18 78818872 78818890 CCCGATCTCGTCTGATCTC 59 78818913 78818932 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000056593 ENSRNOT00000087950 3 1 1 60 X 95831806 95831824 AGTACCCGAAACCATGAGG 59 95831847 95831866 TTAGAGGCAGCTTCACACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061451 ENSRNOT00000088820 3 1 1 60 X 80236777 80236798 AGATGTAATCTAGCTAGCACTG 57 80236738 80236756 TGCAAGAGTGATGAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052835 ENSRNOT00000082843 1 1 1 60 X 108892471 108892489 GCAATGTCTCCTTCCTCTC 58 108892429 108892447 AACAAAGGCAGCACTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052835 ENSRNOT00000082843 3 1 1 60 X 108892544 108892568 GAAATAGGTCTTGCTACCATATCTG 59 108892508 108892529 TGAACCAATAATCAACTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 1 1 1 60 18 25313924 25313943 CTGCCAGGAAATCGATACAG 59 25313879 25313901 CAATGAGTCCCTGGGAGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA25 ENSRNOG00000054762 ENSRNOT00000078371 1 1 1 60 X 154716667 154716691 GCTATCAAAGTAGAAGCTCTTAAGG 60 154716708 154716727 TGACATCCTGTGGAGAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059899 ENSRNOT00000080326 1 1 1 60 10 94963633 94963651 AGATATGAGGTGGGTCTGG 58 94963673 94963693 ATATGGGATGGTGATGAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056074 ENSRNOT00000077524 3 1 1 60 20 17843376 17843394 TGTTCCTGAAAGCTTTGCA 58 17843334 17843352 CTCTGCCATCTACTGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117101.2 ENSRNOG00000050502 ENSRNOT00000073382 1 1 1 60 15 28869990 28870009 CTTGAACTCAGAGATCCACC 58 28870032 28870050 TTGGCCATGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052210 ENSRNOT00000081490 1 1 1 60 20 43797883 43797902 CCATGTCACATTTGCCTCAG 60 43797922 43797943 GAACACAGTGTAGACATAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000056084 ENSRNOT00000088136 1 1 1 60 5 33176034 33176052 CTGTTTACACCCAACAGGC 59 33175992 33176010 TTCACAGGGAGGACATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056893 ENSRNOT00000090399 1 1 1 60 15 84177277 84177295 AAGCATGTGCATTCCACTC 59 84177235 84177253 GGTGTGGACCATTTCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018128.1 ENSRNOG00000051849 ENSRNOT00000084318 2 1 1 60 15 41961226 41961247 GCATAGCACATAATGGTTTGTG 59 41961187 41961207 TTTGAGGCAGCACAATATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018128.1 ENSRNOG00000051849 ENSRNOT00000084318 3 1 1 61 15 41961226 41961247 GCATAGCACATAATGGTTTGTG 59 41961186 41961207 ATTTGAGGCAGCACAATATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061919 ENSRNOT00000090008 2 1 1 60 6 70216462 70216484 CATGGTTGATTCTGATGATCTGG 60 70216502 70216522 AAGGACAGTAAGGGAGAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059674 ENSRNOT00000090694 2 1 1 61 4 42884688 42884709 ATACAGAGAAGATTAGCATGGC 58 42884648 42884669 TGGAACGCTTCACTAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030425.1 ENSRNOG00000056057 ENSRNOT00000088101 3 1 1 60 10 85130394 85130413 GGAATCACCTTCTGAAGCTC 58 85130435 85130454 GCACCAGCAGATCTAAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000058981 ENSRNOT00000078524 3 1 1 61 18 26569096 26569117 GGCATAAATTAATGCTTTGCGG 60 26569138 26569157 TCCTGAAACCCAAGATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052853 ENSRNOT00000081391 1 1 1 60 19 61757568 61757592 CATATGCATTATTAGGTGGTAGAGG 59 61757606 61757628 AGGTTAGAACACTGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000057533 ENSRNOT00000084424 1 1 1 60 18 25475145 25475164 CCTGCACACTATTAAAGCCC 59 25475104 25475124 CGACATTCAGAAGTTCACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000057324 ENSRNOT00000080645 2 1 1 61 11 48816378 48816396 GTGTTCATGGGCTTTCAGG 59 48816335 48816353 AAGCTCATGGCATCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060539 ENSRNOT00000078004 3 1 1 60 11 81376560 81376578 TGCACTGGATTCCAAAGAC 58 81376518 81376537 TATGACAAAGGACACTGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120246.1 ENSRNOG00000048000 ENSRNOT00000071810 1 1 1 60 19 25668834 25668852 TATGTAGACCAGGCTAGCC 58 25668876 25668894 AATACTCAGGAGGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032661.1 ENSRNOG00000026428 ENSRNOT00000031932 1 1 1 60 18 76340231 76340250 ATGTTCTCTTGCTGTCTTCG 58 76340270 76340291 CTTCCCTGTTGTCTTTCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033056.1 ENSRNOG00000057596 ENSRNOT00000083815 1 1 1 60 11 3039610 3039630 CGACTCATCATCCTTGTTTCC 59 3039570 3039589 GTTGGTCTGGATAGCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060906 ENSRNOT00000078484 3 1 1 60 19 45848858 45848876 TTGCACTCCAATATGCTGG 58 45848816 45848834 TGATGTGGTTGACTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059562 ENSRNOT00000078558 2 1 1 61 7 8733943 8733963 CAGTTGTGACTGCTGTATCAC 59 8733980 8734004 CTGAATGTAGAAATAGCCTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000051891 ENSRNOT00000088408 2 1 1 61 17 43770521 43770539 GTAAGGGCCTGGGTAAAGG 60 43770478 43770497 CTGGATGTTGTCTCGTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034761.1 ENSRNOG00000037898 ENSRNOT00000034210 1 1 1 86 11 88570263 88570288 CTGTAATGACACCTTCACTAATGAC 60 88570330 88570350 GAATAAAGGATGCCAGCAAGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059760 ENSRNOT00000083192 3 1 1 60 6 57819896 57819916 AAACTCCAAACAAGCTCTCAC 59 57819938 57819956 ATATGTTGCCCATGACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059030 ENSRNOT00000086381 1 1 1 60 5 59230809 59230827 GAGAAGATTAGCATGGCCC 58 59230767 59230785 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015165.1 ENSRNOG00000057821 ENSRNOT00000079316 1 1 1 80 14 48169817 48169838 AGTAAGAAATATGGTGTGGACC 58 48169876 48169900 AGTATCGTCTATGTTAGAGCTG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059484 ENSRNOT00000088636 1 1 1 62 3 83540210 83540233 CAGAGGCTATGTCTACATTTAGTG 59 83540251 83540272 CGCCATGCTACTAATAATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053132 ENSRNOT00000080136 3 1 1 60 5 142878753 142878771 GGGAAGATCAGTGTGGTCC 60 142878795 142878813 AATATGCAGCATCCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054912 ENSRNOT00000079319 1 1 1 60 11 87547844 87547862 GAGAAGATTAGCATGGCCC 58 87547886 87547904 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051981 ENSRNOT00000087149 1 1 1 60 5 80234131 80234151 AGTAGGTGGTAGAAAGGAGAC 58 80234170 80234191 AGAGGGTCCTATATCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.5 ENSRNOG00000053719 ENSRNOT00000086423 2 1 1 106 6 139013261 139102344 CATTTCCAAGCTGTGTCCTG 60 139013174 139013192 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058319 ENSRNOT00000079663 2 1 1 60 18 74218079 74218098 TTCCCTGTAGAGGAGAACCA 60 74218038 74218058 AATGAAGGAAAGCAGCTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054586.1 ENSRNOG00000051007 ENSRNOT00000075530 1 1 1 65 3 162607775 162607793 GATCGCTGTGAGTTCAAGG 59 162607728 162607746 CTCTGTAGCTCTGGCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061329 ENSRNOT00000086484 1 1 1 60 18 36161917 36161938 ATACAGAGAAGATTAGCATGGC 58 36161958 36161977 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051399.1 ENSRNOG00000055886 ENSRNOT00000082845 3 1 1 82 3 9185829 9185847 CTCTGCTTCAGACTTGCTG 59 9185892 9185913 AAGTTCTCTGTGTCCTTGTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059511 ENSRNOT00000088989 1 1 1 60 4 179054881 179054901 TAGATGGCAGAGAACTGAGAG 59 179054841 179054859 AGGGTTGTTCACAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.4 ENSRNOG00000060540 ENSRNOT00000087074 3 1 1 85 X 152886088 152886964 GATCAGCAGGATTAAGCCC 58 152887277 152887296 CTGCACAAGATCTAGATGGG 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000061161 ENSRNOT00000083077 1 1 1 60 9 57503495 57503513 TTGGAACATGAGCTTGCTG 59 57503453 57503471 TGGAGGAACTGCAATACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0436.1 ENSRNOG00000059866 ENSRNOT00000087728 1 1 1 60 1 43563933 43563951 TCTGTGAAGTGGATGTGGT 59 43563891 43563909 GTGGCTGAGAAGGTTAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.2 ENSRNOG00000046017 ENSRNOT00000073849 3 1 1 89 19 30646582 30646601 TCCCAGATGACTAAGGATGC 59 30646652 30646671 ACTACTGCATTATGCAAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055607 ENSRNOT00000078606 3 1 1 65 6 76800709 76800731 GGAGCAATACAGAGAAGATTAGC 59 76800666 76800685 GAACGCTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059884 ENSRNOT00000083397 3 1 1 60 7 116985982 116986001 TCTACACTTGGACAGACTGG 59 116986024 116986042 TCTGGTGACAGATACAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fmr1nb ENSRNOG00000053397 ENSRNOT00000090728 3 1 1 83 X 154645555 154648096 CTAAGGGATAAGCCTACACAG 57 154645492 154645510 GTACACAGGCAGAAATCCC 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000056630 ENSRNOT00000091504 3 1 1 60 11 69743445 69743463 CTCGGCAGTTAAGAGTGCT 60 69743485 69743505 TGGATACTGAGAGCCAAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052714 ENSRNOT00000077490 3 1 1 60 11 81376959 81376983 ATACATTACTATCTCTGCCTAGCTC 60 81376923 81376943 ATGTTTGAAACCAAGCGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009377.1 ENSRNOG00000055011 ENSRNOT00000087889 2 1 1 67 2 94960470 94960490 GAAGTGATGGCGTTGATGG 59 94960521 94960539 CCACCAACAATCCCAACTG 59 Novel DesignRelaxed Rattus norvegicus 81 5S_rRNA ENSRNOG00000045242 ENSRNOT00000070509 3 1 1 60 4 39094485 39094505 TCTCCATCTGATCTCAGAAGC 59 39094527 39094545 AATTTACCATCCGAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.2 ENSRNOG00000058371 ENSRNOT00000091767 3 1 1 60 2 225025935 225025953 GGAGCCTAACTTCTGATCC 57 225025893 225025911 TTGTTGAAGTCAGTCTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044448 ENSRNOT00000069715 3 1 1 60 11 58286648 58286668 TCTTAGAAGCTAAGCAGGCTC 60 58286690 58286708 ACCCTAGGATAGCTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000057568 ENSRNOT00000084982 2 1 1 60 11 61751954 61751973 TGGATAACAATGGGCAAGAG 58 61751995 61752014 TTCTGAGAAGAAACAGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053669.1 ENSRNOG00000011715 ENSRNOT00000015599 1 1 1 80 3 119499337 119499356 CTGTTATTGTAGCACCACCA 58 119499401 119499419 ATGTACTTGGGTGGAGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043725.1 ENSRNOG00000055568 ENSRNOT00000086623 1 1 1 60 19 36390212 36390233 CTGCTGACGATAGTTGATACTC 59 36390251 36390272 GCCAGCAATTACTATTATCCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056621.1 ENSRNOG00000041450 ENSRNOT00000063203 1 1 1 69 7 32983215 32983233 TATGTGGACTCTAGCTGCC 59 32983164 32983182 ATGTCTACACTGGCTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052,ENSRNOT00000088581 3 2 6 80 10 74882927 74882947 TCTATCAGTTCCCAGATTGTG 57 74882988 74883174 ATGGGATGCTTTCCTTTAGG 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000061528 ENSRNOT00000090930 3 1 1 60 9 79592801 79592819 AGTTGGAATAGGAGCTTGC 58 79592842 79592861 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058646.1 ENSRNOG00000050863 ENSRNOT00000072180 2 1 1 61 7 129501151 129501171 AAATGCTTCCATGAGATCCAG 59 129501194 129501212 CCCTTCCTCCCTTGATCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073073.1 ENSRNOG00000050747 ENSRNOT00000075780 2 1 1 60 4 157710091 157710109 ATCCTAACAGTGGGAGCAG 59 157710132 157710151 GTACAGGGTCCTAAAGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068179.1 ENSRNOG00000046217 ENSRNOT00000072563 3 1 1 67 9 87667032 87667050 CAATGGCCTTCAGTGTCTG 59 87667080 87667099 GGCTAAGGGACTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027096.1 ENSRNOG00000060557 ENSRNOT00000081895 2 1 1 81 17 14353473 14353493 AGATGATCCAGGACAAATGAC 58 14353536 14353559 TCTCTGTAGCTTGGCTCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056080 ENSRNOT00000088036 1 1 1 60 9 91561548 91561571 CATATGTATGTCACAGTAAGTGGC 60 91561588 91561608 CATAGGTCAGAACATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056080 ENSRNOT00000088036 2 1 1 60 9 91561550 91561571 TATGTATGTCACAGTAAGTGGC 58 91561589 91561610 CTCATAGGTCAGAACATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054019 ENSRNOT00000082527 2 1 1 60 7 73213892 73213913 GCTAAACATTCGCTATAGTACG 57 73213853 73213872 ACCCAGGTAAAGAACTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060588.1 ENSRNOG00000027186 ENSRNOT00000035078 2 1 1 68 4 82432776 82432794 CAACAACCAGAGCAGACTG 59 82432726 82432744 AAGAGTGAGGCACTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061512 ENSRNOT00000087343 2 1 1 60 9 57021976 57021994 GCTGTATCACATGAGTGCC 59 57022016 57022036 TACTGAGCTTTGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051422 ENSRNOT00000089618 3 1 1 63 9 32739972 32739992 TCCAGGAATATTATGTGGCAG 58 32740014 32740035 TCATAAGTCAGAACCTTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094217.1 ENSRNOG00000039788 ENSRNOT00000038102 1 1 1 107 1 31436825 31436843 AGATATGGCAAAGGCTGAC 58 31436995 31437013 CACATCGATGGATAAGCCG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA41 ENSRNOG00000058449 ENSRNOT00000091608 3 1 1 60 9 69955517 69955535 CTGCAGCTGTCTTTATGGT 58 69955556 69955577 TGTGTAACAGTTTCTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000028767 ENSRNOT00000033187 2 1 1 80 1 62191036 62191223 ACAGCATCCACATAGGAGAG 59 62190975 62190995 GGACTGTCAGATGGTATTTCC 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000051992 ENSRNOT00000080582 3 1 1 60 9 11141301 11141319 GCAGTCCTTTGTTCATCCT 58 11141259 11141278 TAGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062694.1 ENSRNOG00000052732 ENSRNOT00000089136 3 1 1 80 6 3416575 3416598 AGATTTCACCTCACATGCGA 60 3416639 3416659 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056499 ENSRNOT00000090344 1 1 1 60 4 38173027 38173046 CATTGCAGGTGTGACTACAG 59 38173068 38173087 AGTAGATTCAGCCTCACTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020537.1 ENSRNOG00000059133 ENSRNOT00000090623 1 1 1 80 13 29844764 29844786 AGATTTCACCTCACATGCG 58 29844829 29844848 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07066529.2 ENSRNOG00000053989 ENSRNOT00000090330 2 1 1 63 9 10840915 10840933 CAAGAAGCTCCCTGTTTGC 60 10840870 10840888 AAGAAGAGATGGGAGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007134.1 ENSRNOG00000051496 ENSRNOT00000088966 2 1 1 60 1 282557851 282557869 GAGTGACCCTTCTGAGCTG 60 282557888 282557911 CTTCACATATTTCTCATACGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068694.1 ENSRNOG00000032822 ENSRNOT00000056378 2 1 1 60 9 114731793 114731811 CAAGTCCAAGAACCACACC 59 114731751 114731771 CTTGATACCATTTCTGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037487.1 ENSRNOG00000057658 ENSRNOT00000088630 1 1 1 67 X 22417814 22417832 AAGAAGTGCCTGAGGACTC 59 22417763 22417781 CAGTAGGGTTCTCTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC124874.3 ENSRNOG00000058855 ENSRNOT00000044263 1 1 1 68 13 82267413 82267431 TCTTTCTCCACATCCTCGC 60 82267361 82267379 TCACACCAGTCAGAATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000052555 ENSRNOT00000083087 2 1 1 65 2 198389031 198389049 AAGAAGACCCGCATCATCC 60 198389077 198389096 CTTGTTGAGTTCTTCGTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0051.7 ENSRNOG00000053095 ENSRNOT00000079690 1 1 1 93 20 5049630 5049650 CTCCCATCTTCATCAACTCTC 58 5049705 5050562 TTACTTCACTTGTCAGCGG 58 Novel InUTR Rattus norvegicus 81 AABR07037536.1 ENSRNOG00000056810 ENSRNOT00000085588 1 1 1 80 X 23244211 23244236 CATGTTAACCCTTAGAATCATGGAG 60 23244155 23244176 GATAGACAGGCATAAGGTAGCA 60 Novel Rattus norvegicus 81 AABR07012030.1 ENSRNOG00000053252 ENSRNOT00000071276 1 1 1 80 2 182796617 182796638 AGAGCCTCTTCACTACTAAGC 59 182796553 182796571 GATGTCACCCTGGGAACTC 60 Novel Rattus norvegicus 81 Rn60_10_0890.4 ENSRNOG00000051098 ENSRNOT00000075835 3 1 1 81 10 89168724 89168742 AACGAGGAAAGGGATGAGG 59 89168226 89168681 TGGAAATACCTTCTCCGATCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044087 ENSRNOT00000069354 2 1 1 60 3 55740494 55740514 CCATATCATCCTGAACATCCC 58 55740535 55740554 ACAAGGTTCTCCTGATCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053604 ENSRNOT00000082382 3 1 1 60 8 71935866 71935884 TGTCACTCCATTGAGGCTG 60 71935908 71935926 AGTACTGAGGGAGGAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019895.1 ENSRNOG00000056798 ENSRNOT00000070835 1 1 1 60 13 6456361 6456382 ATCCATCATGTTCTAGTCACAC 58 6456322 6456343 CTAGCATCTCTACTTCTTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030911.1 ENSRNOG00000032442 ENSRNOT00000052258 3 1 1 60 10 108726352 108726370 AGGCAAGAAATTTGACCGA 58 108726310 108726333 GTCCATCTTGAAAGATTCACTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.5 ENSRNOG00000058678 ENSRNOT00000080532 1 1 1 93 20 4964477 4966304 GTCATGGTACACAGCTGGT 60 4964402 4964420 AGGACAAGATCAGCGAGTC 59 Novel Rattus norvegicus 81 SNORA33 ENSRNOG00000054517 ENSRNOT00000084929 2 1 1 60 1 22759979 22759999 CTGCTTAGCTCTGTGTTTCTG 59 22760019 22760039 GTAACATGGCGTTACTATTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070603.1 ENSRNOG00000057772 ENSRNOT00000085213 2 1 1 62 8 76677301 76677319 TTGGTATCTGGCACTGTGG 60 76677345 76677363 GTATTGTAGGACCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108312.1 ENSRNOG00000053031 ENSRNOT00000078283 2 1 1 80 14 80550935 80550956 TCCCACCGTAATAATCTGCT 59 80550999 80551019 GTGATATAGCATTCTGCCTCC 59 Novel Rattus norvegicus 81 SNORA16 ENSRNOG00000059346 ENSRNOT00000086369 2 1 1 60 8 2382022 2382043 CTGTGATCACAATGGAGATCTG 59 2382061 2382082 AGCAAACAGAACTGTAACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052082 ENSRNOT00000081792 2 1 1 60 8 95064697 95064717 TCACCTGTTATCAGTAGGTGG 59 95064657 95064677 TTCAGAACACTGAGAGTACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054145 ENSRNOT00000079293 3 1 1 66 8 69124879 69124899 GCAGTGATGTTGTAATTTGCG 59 69124927 69124945 TTCAGCTTTCTGACAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097023.1 ENSRNOG00000041504 ENSRNOT00000063257 2 1 1 60 8 85987254 85987273 TAGAAGGCAGACAGATCCCT 60 85987213 85987233 CCTGGAATTCCCTCTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000056888 ENSRNOT00000086106 2 1 1 61 8 76903401 76903425 GTCAGTGATAAGAGTGGTTATACAC 59 76903443 76903462 TCTCCATGTATAATGGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049286.1 ENSRNOG00000061114 ENSRNOT00000075137 1 1 1 80 5 113814361 113814383 AGATTTCACCTCACATGCG 58 113814299 113814318 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000053730 ENSRNOT00000078447 2 1 1 63 3 21013275 21013293 TCTGAGGTGCGATTATTGC 58 21013318 21013338 CCTCATCTTGGAAATAAGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025328.1 ENSRNOG00000043076 ENSRNOT00000067642 1 1 1 60 16 33942737 33942756 TGCTAAAGGAGACAAAGCCA 60 33942778 33942797 AGACAACCTTGCAGATCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026240.1 ENSRNOG00000061711 ENSRNOT00000090682 1 1 1 60 16 69262273 69262291 GTGTACAGCTTCACATCCT 57 69262231 69262250 TTTCCTTGGACACTTTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059287 ENSRNOT00000087538 2 1 1 60 3 151754371 151754392 TGCTGTGTCACATGTAAATCAG 59 151754409 151754431 AGTCAGTATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053596.1 ENSRNOG00000050029 ENSRNOT00000071456 1 1 1 60 3 115621496 115621517 GGATGACTTGCATATGAGTAGG 59 115621538 115621556 CTCAGCATTCAAGGATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053596.1 ENSRNOG00000050029 ENSRNOT00000071456 3 1 1 60 3 115621492 115621513 CCAAGGATGACTTGCATATGAG 59 115621531 115621552 GCATTCAAGGATGGATGATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024908.1 ENSRNOG00000055634 ENSRNOT00000078775 1 1 1 60 16 21807306 21807325 CATGTGCTATCGAAAGTGTG 57 21807265 21807284 TGGAGCTGTTAGTATAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550609 ENSRNOG00000054481 ENSRNOT00000079810 2 1 1 80 3 167185268 167185290 TGAATCCTTCTCAGAAGAGTCTC 59 167185006 167185230 CCCAAATGTAGCCTATAGCAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056303 ENSRNOT00000079927 2 1 1 60 3 123381617 123381639 GATACAGAGAAGATTAGCATGGC 59 123381658 123381677 GAACGCTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031234.1 ENSRNOG00000054469 ENSRNOT00000091733 2 1 1 80 18 5024846 5024866 CATGTTTGTCCTGTTCAACGT 60 5022459 5024806 GGTACCCAAATCTGCAAAGAC 60 Novel Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 2 1 1 83 18 7118600 7118784 AAGACAACACTGGGTCAGG 60 7118831 7118849 TATGTTCTCCTGATCGCGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031388.1 ENSRNOG00000054849 ENSRNOT00000079904 3 1 1 81 18 12104431 12116524 TTCCGAAGTTCACATGAGAG 58 12104369 12104388 GGTGACAATGTTGCTTACTG 57 Novel Rattus norvegicus 81 AABR07014987.1 ENSRNOG00000059475 ENSRNOT00000077077 2 1 1 109 14 43166525 43171730 GAAAGACTAGGTGCTGCAG 58 43171803 43171821 CTTCCTGTTCCATTTGCCC 59 Novel Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 2 1 1 60 5 7577081 7577453 ATCTCATCTTGGAAAGCAGC 58 7577474 7577494 TTCTGTTCCTCAGAACATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062812.1 ENSRNOG00000058659 ENSRNOT00000084969 3 1 1 82 6 10278966 10293490 GTCTCATGATCTCCTATGCCA 59 10278904 10278922 CTTCTGCACTGGAGAAGGT 59 Novel Rattus norvegicus 81 AABR07060593.2 ENSRNOG00000055304 ENSRNOT00000088685 1 1 1 93 4 83199052 83199070 TATTCAGCCTAAGCTGGCC 60 83199126 83210515 ATTTCCTTGCTGTTCACCTG 59 Novel Rattus norvegicus 81 AABR07000385.2 ENSRNOG00000058425 ENSRNOT00000082588 3 1 1 182 1 11840126 11840144 AATACCATCCCAGCTAGCA 58 11837795 11837813 CTCCTGGACATCAGAGACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015517.1 ENSRNOG00000058054 ENSRNOT00000088045 3 1 1 80 14 61298793 61298811 AGAAACAGAGTCACTGCAG 57 61298855 61299417 AAGAGTACCACCATGATGC 57 Novel Rattus norvegicus 81 AABR07047189.1 ENSRNOG00000053937 ENSRNOT00000078949 3 1 1 96 5 22975145 22975163 CTCTGTCGGAAGGAATGGG 60 22975221 22979546 TTTCACATTAACCCTCAGCAC 59 Novel Rattus norvegicus 81 AABR07015547.1 ENSRNOG00000058778 ENSRNOT00000083114 2 1 1 81 14 62674707 62674726 GCATGTGCATTTAACGATGG 59 62674768 62677441 CTCCTCTTGTCTTCTTTGCTG 59 Novel Rattus norvegicus 81 AABR07060930.1 ENSRNOG00000059343 ENSRNOT00000083757 1 1 1 62 4 101318766 101318784 CTCTAATGGGTGGCACCTC 60 101307122 101307143 TCATTACTTGTAAGCTGGAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015652.1 ENSRNOG00000054995 ENSRNOT00000084963 2 1 1 75 14 68796352 68796372 CCTGTGAAACAATCTTAGGGA 58 68790467 68790485 AGTCCTCTGCACGATTACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015654.1 ENSRNOG00000054916 ENSRNOT00000090988 2 1 1 80 14 68876577 68876595 GCCAACAGGATTTAGTGGA 57 68802063 68876533 GCACATTCTTCAAGCTTGC 58 Novel Rattus norvegicus 81 AABR07015705.1 ENSRNOG00000053383 ENSRNOT00000079309 1 1 1 118 14 71309106 71309125 CTTCTCAACAGCAGAGTGTG 59 71308471 71309031 CATGCTATGAGCTGATATCTTAGAG 59 Novel Rattus norvegicus 81 AABR07015800.1 ENSRNOG00000054201 ENSRNOT00000081142 3 1 1 80 14 77652158 77668400 ATGAATGAAATTGAGGCTCAGG 59 77652099 77652119 TTTCACCTTCTGTGTCAATGG 59 Novel Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 2 1 1 72 10 78686096 78686117 AATATCCACATGGAGACATCTG 58 78686150 78687016 ATGTAGCTGACACGGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061333.2 ENSRNOG00000055980 ENSRNOT00000082483 1 1 1 88 4 116863376 116863394 GTGAAGGCTCAACTATGGG 58 116863446 116876834 TAGTCAAACTCACCACTGC 57 Novel Rattus norvegicus 81 AABR07061333.2 ENSRNOG00000055980 ENSRNOT00000082483 3 1 1 89 4 116863376 116863394 GTGAAGGCTCAACTATGGG 58 116863446 116876835 GTAGTCAAACTCACCACTGC 59 Novel Rattus norvegicus 81 AABR07030366.1 ENSRNOG00000060524 ENSRNOT00000088573 2 1 1 91 10 82739590 82742963 AATGTACCAGGCCTTCCAG 59 82739517 82739537 ATGATACGGTGGTCTTGTCTC 60 Novel Rattus norvegicus 81 AABR07030386.2 ENSRNOG00000055324 ENSRNOT00000079877 3 1 1 63 10 83617753 83617773 GGGATTCTCGTAAGGGTAGAG 59 83604527 83604545 TCTGCTCAATTTCCAGACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072169.1 ENSRNOG00000060787 ENSRNOT00000081040 3 1 1 111 10 84718654 84718672 TTGGATTCTTCCCTCTGGC 59 84714893 84714911 TTGAAAGATCTCGGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030450.1 ENSRNOG00000055695 ENSRNOT00000077366 2 1 1 98 10 87041798 87045812 CTGTGACATAGGAGCCCAC 60 87045874 87045892 GTTTACCTGTGGTCGACCA 60 Novel Rattus norvegicus 81 AABR07061384.1 ENSRNOG00000058483 ENSRNOT00000091313 1 1 1 80 4 120994865 120994886 GCAGAACAAAGACTCATGTAGG 59 120993723 120994824 GCAATGAGTGAAGCTGGTG 60 Novel Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 3 1 1 69 1 21438020 21465605 ATACTTCGTTCCTTGCACAC 59 21465637 21465655 AATGCATAGATGAACCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 3 2 2 96 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159820 93159840 TGCTTCAGATCTTGAAGTTCC 58 Novel Rattus norvegicus 81 AABR07048636.1 ENSRNOG00000054600 ENSRNOT00000083780 1 1 1 80 5 85624319 85624340 TGTCAACTTCATCTTCCTTCTG 58 85596439 85596457 TTCTCTGGGTTCCATCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048878.1 ENSRNOG00000051725 ENSRNOT00000084081 2 1 1 80 5 95426334 95426352 TTGCACTGGAAGAAAGGGA 59 95279213 95426294 GACTCTTCATTTCTTCACTAGGG 59 Novel Rattus norvegicus 81 AABR07016586.1 ENSRNOG00000053517 ENSRNOT00000091607 3 1 1 92 14 105353496 105353514 CCTGGAAGAGTCCTGATCG 59 105353570 105358449 GCTTCTGCTCTCCATTCCT 60 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000081578 2 1 2 83 10 93234873 93235423 GTAAAGTGGCATTCTGGGTC 59 93235468 93235487 TTCATCCTCCAGATCGAAGC 60 Novel Rattus norvegicus 81 AABR07000968.2 ENSRNOG00000061372 ENSRNOT00000083825 3 1 1 92 1 30196312 30196999 GTGAAATTTGATGCCAATGGTG 59 30197051 30197070 CTTTGCATTGCTTCTTCAGC 59 Novel Rattus norvegicus 81 AABR07061807.2 ENSRNOG00000052522 ENSRNOT00000077582 3 1 1 103 4 146300252 146300271 GTTCCATAGGAAGACACAGC 58 146293042 146300090 GGGAAGAGAATCTGTTAAGATACC 59 Novel Rattus norvegicus 81 AABR07001001.1 ENSRNOG00000060926 ENSRNOT00000086351 2 1 1 84 1 31937686 31938903 AGTATCCCTCCAGTAGCAG 58 31938951 31938969 GTTGGTTCTTGGCTCTCAG 59 Novel Rattus norvegicus 81 AC142421.2 ENSRNOG00000061518 ENSRNOT00000081097 3 1 1 80 1 32240544 32240562 AGAGATAAGATGCTGGCAC 57 32240606 32244062 TTCCAGAGAAACCTAGGCT 58 Novel Rattus norvegicus 81 AABR07049079.1 ENSRNOG00000053914 ENSRNOT00000077312 3 1 1 80 5 103669493 103669513 GAGCTAATTGACTGCTAGCTG 59 103669552 103684802 GAAACAGAGTCATCATCTCCTC 58 Novel Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 2 1 1 60 15 1152907 1161390 TGGATATCTGTAGAGATGTGGA 58 1152868 1152886 GAACTTCTAGGTTGCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016856.1 ENSRNOG00000061888 ENSRNOT00000091393 3 1 1 104 15 2339150 2346048 AGTGGAACTCAAGTGTCCT 58 2339064 2339082 GTTGAAGCTCAGGTCAAGC 59 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000083213 1 1 2 60 10 99706350 99706368 CCGTATTAACATGGGCCAC 59 99668371 99668391 TAAATGACTTCTGAGTCCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049148.1 ENSRNOG00000055285 ENSRNOT00000089642 3 1 1 81 5 107585633 107585651 GTCTGTTGCCCAACAACTC 59 107585695 107585933 AGTGAATGACTGACTCCCTG 59 Novel Rattus norvegicus 81 AC128967.2 ENSRNOG00000054781 ENSRNOT00000091730 3 1 1 88 4 156963353 156963372 TCCTGATGGTTCATCAATGC 58 156965848 156965866 CTCTTCCTGCAGGACTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016947.1 ENSRNOG00000053368 ENSRNOT00000090163 2 1 1 80 15 5372444 5372463 TAAACACAGTTCCTGGACAC 58 5367273 5372403 TTCCGAATAAACCCTAAGCAG 58 Novel Rattus norvegicus 81 AABR07016947.2 ENSRNOG00000061796 ENSRNOT00000086017 3 1 1 84 15 5374940 5374959 AGCGTTCAAAGGAAGATTCC 59 5369437 5374893 TTCTCTGCTGCAATTGCAG 59 Novel Rattus norvegicus 81 AABR07062069.2 ENSRNOG00000061632 ENSRNOT00000087235 3 1 1 81 4 160343974 160343992 ATCCCAGGAGAAGACAGTC 58 160341903 160343930 CCAAGTCCTTCTGTGATCTG 58 Novel Rattus norvegicus 81 AABR07001054.2 ENSRNOG00000057357 ENSRNOT00000086733 3 1 1 80 1 35965847 35965866 CAGGAGACCAGTGAACTCTC 60 35924773 35965804 GTTCCTGGAAAGTGACCCA 60 Novel Rattus norvegicus 81 AABR07062112.1 ENSRNOG00000056752 ENSRNOT00000083544 1 1 1 60 4 161519684 161519702 GAGAACTTCACCATCCTGC 58 161519826 161519844 TACACAGCAAGGTCTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030890.1 ENSRNOG00000053005 ENSRNOT00000078183 3 1 1 86 10 107999834 108000073 GAAGTAGCTCCAGCTGGAC 60 108000122 108000141 ATCTGCTGACAAACTGTCCA 60 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086246 2 1 3 117 1 38842056 38842074 GAAACTCAGCAAGAAGCCA 58 38836991 38837009 CATACTTGGTCCTGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017269.1 ENSRNOG00000061896 ENSRNOT00000090531 1 1 1 80 15 20432698 20432716 AAGGTGACACCTCTTGGAC 59 20432757 20435352 AGTTTCAGAAACAGACTGTTGG 59 Novel Rattus norvegicus 81 AABR07017270.1 ENSRNOG00000057155 ENSRNOT00000084051 1 1 1 80 15 20609659 20609680 CAGAATACCAAGACAATGGCTG 60 20609718 20611501 GGACATCTTGAAGATTGGTACG 59 Novel Rattus norvegicus 81 AABR07062367.1 ENSRNOG00000055253 ENSRNOT00000088485 2 1 1 86 4 172436458 172436476 AGAGTGGATCAGAGCTGTG 59 172436523 172438186 GAAAGCAATTCTGTAGCTGAGG 60 Novel Rattus norvegicus 81 AABR07033184.1 ENSRNOG00000056410 ENSRNOT00000078567 1 1 1 87 11 9373180 9416205 AAAGAACCGACCAGACTCTC 60 9416253 9416273 GGTATTCACTGAACTGCACTC 59 Novel Rattus norvegicus 81 AABR07031537.1 ENSRNOG00000055852 ENSRNOT00000087406 1 1 1 80 18 19071452 19071471 TCCTAGGGATGATCACAAGC 59 19067218 19071412 CTAGATGTCCATACCTGGAGTC 59 Novel Rattus norvegicus 81 AABR07031551.1 ENSRNOG00000053324 ENSRNOT00000085695 1 1 1 80 18 19619805 19619826 AGGAATGAACTCAGGTCTTCAG 60 19618315 19619768 CAGATTACCCTGTCAAGAAATGG 60 Novel Rattus norvegicus 81 AABR07049688.1 ENSRNOG00000052085 ENSRNOT00000083808 1 1 1 91 5 133151606 133159552 AGGGAAGAGATCTTTCTGTCC 59 133151535 133151553 GCATTCCAGCATCCTAGGA 59 Novel Rattus norvegicus 81 AABR07062502.1 ENSRNOG00000060730 ENSRNOT00000089565 2 1 1 81 4 180142410 180150417 TGTATCAAGTTCTCTTGGAGAC 58 180142350 180142369 ATTGGAGGAGTTAACAAGCC 58 Novel Rattus norvegicus 81 AABR07031604.1 ENSRNOG00000051421 ENSRNOT00000090746 2 1 1 82 18 21896650 21915010 TCCTAAGACTGAGCACCAG 58 21915056 21915074 AATAGAGGTGGGTGTCAGC 59 Novel Rattus norvegicus 81 AABR07031611.1 ENSRNOG00000061426 ENSRNOT00000084525 1 1 1 83 18 22216746 22216764 AAACACGTAGCCTGAAGAC 58 22213681 22216700 GTTCAGTGGCCTCATATGAC 59 Novel Rattus norvegicus 81 AABR07017825.5 ENSRNOG00000060541 ENSRNOT00000089248 1 1 1 60 15 31497865 31497885 ACCCTGGAGTGTTCATATGAG 59 31497993 31498014 CTGGAAGATTACAGAATAGCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC135285.3 ENSRNOG00000059920 ENSRNOT00000078346 2 1 1 147 18 28330021 28337246 CAGAAGAACAGCTTGTGGTC 59 28337356 28337374 GTTCTCTTGAGGCCCAGAG 60 Novel Rattus norvegicus 81 AC135285.3 ENSRNOG00000059920 ENSRNOT00000078346 3 1 1 151 18 28330024 28337248 AAGAACAGCTTGTGGTCCT 59 28337363 28337381 AGAGTCGGTTCTCTTGAGG 59 Novel Rattus norvegicus 81 AABR07049815.1 ENSRNOG00000054075 ENSRNOT00000083167 3 1 1 82 5 139265911 139265932 TCCTGAACCTTCTACATTAGTC 57 139265343 139265868 ACGAACTTCCCTTGTTCTC 57 Novel Rattus norvegicus 81 AC125248.1 ENSRNOG00000060829 ENSRNOT00000080979 1 1 1 81 18 29535542 29535561 TTCAGAGTGATTCCCTAGCA 58 29535605 29539024 GGAACCCAGTAGCAATGTG 59 Novel Rattus norvegicus 81 AABR07062885.1 ENSRNOG00000053520 ENSRNOT00000077939 2 1 1 107 6 12717235 12718125 AATAACAAGCTGTGGCCCT 60 12718194 12718214 GTTAGACACGCTAGTCAATGC 60 Novel Rattus norvegicus 81 AABR07062915.1 ENSRNOG00000056572 ENSRNOT00000077527 3 1 1 80 6 14598348 14599308 TACTCCCATTGTACAGAAACCA 59 14599349 14599367 CCCATACTTGGAACATGCG 59 Novel Rattus norvegicus 81 AC097037.3 ENSRNOG00000052966 ENSRNOT00000087313 1 1 1 80 15 32975254 32975685 AGTTGGAATTTCCTCACTCCT 59 32975194 32975212 TACAAGGGAGAACGCAGAG 59 Novel Rattus norvegicus 81 AABR07001599.1 ENSRNOG00000059913 ENSRNOT00000087624 3 1 1 137 1 54127228 54127246 TGATGAACCTGTGTTGCTG 58 54126664 54127128 TCCTCTAGTGATCTTCTGGG 58 Novel Rattus norvegicus 81 AABR07049960.2 ENSRNOG00000059532 ENSRNOT00000090537 1 1 1 157 5 146306423 146306441 TCATCGTGAAGGACTTGGG 59 146307864 146307882 GAGTTTCATTGCCTCCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018064.1 ENSRNOG00000061921 ENSRNOT00000089924 3 1 1 80 15 38338429 38338449 GTGGCTTTGCTTTCTAGACAC 60 38338161 38338389 AAAGTGACAGATGCTATCCCA 59 Novel Rattus norvegicus 81 AABR07018087.1 ENSRNOG00000058383 ENSRNOT00000086630 2 1 1 80 15 38738080 38738098 CCAATGGTGTTCTCCTGAG 58 38738141 38751346 CTTGTTCAACCTTGGTTGTC 58 Novel Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 3 1 1 75 15 40480837 40481466 ACTTCAATTCCTTCTGCTCG 58 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050057.1 ENSRNOG00000061203 ENSRNOT00000086977 3 1 1 97 5 149430858 149430878 TTTCAGCTTACAGTTCTGTCC 58 149421118 149421136 GACTGAGACAGGAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC118963.3 ENSRNOG00000057705 ENSRNOT00000085459 1 1 1 86 5 151669100 151673664 TTGCTAAGTGGCTCAATCCA 60 151673712 151673731 GGAGTCAGCCTAACCTTCTC 60 Novel Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 2 1 1 68 6 36731313 36731331 ACATATCATCAGTGCCGGG 60 36729864 36731282 TTCATCTGTGAGGTGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050265.1 ENSRNOG00000052537 ENSRNOT00000087936 2 1 1 60 5 158641391 158641409 CAACTTCAAGACAGACGGC 59 158641349 158641367 AGTTATGCCACTTACCCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107505.2 ENSRNOG00000056691 ENSRNOT00000077835 1 1 1 80 18 53431364 53431385 CCACCTCATACCATACAATGAC 59 53430398 53431323 CAAGATGGGACCAGTAGGA 58 Novel Rattus norvegicus 81 AC095289.1 ENSRNOG00000054836 ENSRNOT00000082256 2 1 1 96 18 55937338 55938626 AGAGCTCAGAGTACACAGAG 58 55937261 55937280 TCGTACCTTCAGATTTGAGC 58 Novel Rattus norvegicus 81 AABR07050482.1 ENSRNOG00000053174 ENSRNOT00000082039 1 1 1 87 5 166799797 166803242 ACGAAGAGATCCATGCCAG 60 166803293 166803311 AAATTCTCGGAGGTGCCTC 60 Novel Rattus norvegicus 81 AABR07018476.1 ENSRNOG00000056070 ENSRNOT00000086211 1 1 1 80 15 60689343 60691062 AAGGAGAAAGATGCTCCCTC 59 60689282 60689300 GATCACCTGCCTCTGACTC 60 Novel Rattus norvegicus 81 AABR07002674.1 ENSRNOG00000059266 ENSRNOT00000090105 3 1 1 95 1 80191600 80191618 GTTTGGTATCAGGCAAGCG 60 80190670 80191541 CCCATCTCACCTCTTCTCC 59 Novel Rattus norvegicus 81 AABR07002677.2 ENSRNOG00000060041 ENSRNOT00000081418 2 1 1 106 1 80378583 80378601 ATCCCTGGCAGAAAGACTG 59 80378671 80382573 GGATCTCCAGCACTGACAG 60 Novel Rattus norvegicus 81 AABR07032518.1 ENSRNOG00000060022 ENSRNOT00000084630 1 1 1 81 18 69681089 69682758 CACATTCTGTGAATGAAGGAGAC 60 69681030 69681052 GTAGGCTAGTAGGTCAGTAATGG 60 Novel Rattus norvegicus 81 AABR07051218.1 ENSRNOG00000059773 ENSRNOT00000079427 2 1 1 80 3 1644001 1645307 TGAGACCTCTAGTAAGGTTTCC 59 1645344 1645366 CTTACAGACTTGATTCCAGACTC 59 Novel Rattus norvegicus 81 AABR07051248.1 ENSRNOG00000056977 ENSRNOT00000077813 1 1 1 80 3 3243837 3243856 GTTCAATATAGACCTGGCCC 58 3243899 3244609 CGTCCTTCCACCTTATGTG 58 Novel Rattus norvegicus 81 AABR07072841.1 ENSRNOG00000052706 ENSRNOT00000078087 3 1 1 96 3 3574881 3574899 GTTTAAAGGGACAGAGCGC 59 3584053 3584071 GAATCAGTGAGCATCTGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063852.1 ENSRNOG00000052265 ENSRNOT00000082698 3 1 1 96 6 52713262 52713285 GGAGAAGCTGTATATGTACATCAG 59 52712886 52712905 CTTTACTGTTGAGCCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063901.2 ENSRNOG00000055851 ENSRNOT00000083463 1 1 1 60 6 55013260 55013278 CCGAGTCTTGGAATCTCTG 57 55036121 55036139 CGTCTTCATGTGAAGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 1 2 2 80 1 88265241 88266843 TTTAAGGAAAGCAAAGGCTGG 60 88266880 88266903 TGACTCTTCTTCATAGAGTTCCTG 60 Novel Rattus norvegicus 81 AABR07051310.1 ENSRNOG00000052734 ENSRNOT00000088404 3 1 1 80 3 4763290 4766182 CTTCTATGAGATCATGAGGAAGC 59 4763232 4763250 ACAAAGGACGACATCCTCC 59 Novel Rattus norvegicus 81 AABR07032642.1 ENSRNOG00000057908 ENSRNOT00000091137 2 1 1 62 18 75847170 75847188 GTAACATCGTGGTCCTGCT 60 75847214 75848287 CCGTGATTCCCAGAAACTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07064139.1 ENSRNOG00000061935 ENSRNOT00000085970 1 1 1 94 6 66180570 66180590 TGAAACTTAAGCTGAGGTCAC 58 66180644 66181497 CCAAATACAGTGGTGACTGAG 59 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 1 1 1 60 15 97420748 97421804 GATATGTAGGCCTCCTGAGC 60 97421823 97421845 CCATGTAGGGATGTTACTTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064264.1 ENSRNOG00000059058 ENSRNOT00000090871 3 1 1 80 6 71837413 71837432 TGAAATCTATGGCCTGAGTG 57 71835338 71837371 GAGGTAGCATCTTCCTTGTG 58 Novel Rattus norvegicus 81 AC132699.2 ENSRNOG00000058830 ENSRNOT00000088688 1 1 1 80 18 79316760 79316780 CATTATCCAAACCCATCAGCC 60 79316820 79317514 AACGATATTGATGCATGGAGG 59 Novel Rattus norvegicus 81 AC142138.2 ENSRNOG00000059375 ENSRNOT00000091127 3 1 1 81 3 9499237 9499256 TGAATGTACTGAGCCTCCTG 59 9499300 9500640 CAGATTACAAGACACCGCC 59 Novel Rattus norvegicus 81 AC127118.1 ENSRNOG00000054696 ENSRNOT00000085546 2 1 1 101 18 79590296 79590314 TGTTTGCATCACACTGGGA 60 79590379 79590509 TCACGATGAAGTCACCCAG 59 Novel Rattus norvegicus 81 AABR07072853.2 ENSRNOG00000056129 ENSRNOT00000078431 3 1 1 114 3 9945851 9945869 TCTGGATCGTCTCAACACG 60 9942984 9945773 ACCATTGCATTTGCACCTG 60 Novel Rattus norvegicus 81 AABR07019392.1 ENSRNOG00000051611 ENSRNOT00000087914 2 1 1 60 15 103673212 103673230 TTGGAAGTCCCTCTGATGC 59 103675016 103675037 TTGGACTAATTCTTCTTGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051555.1 ENSRNOG00000056393 ENSRNOT00000080510 3 1 1 90 3 16955697 16955715 GTGAACTGCATCAGACAGG 59 16955769 16955989 CCACAGGTACCAGATACCG 59 Novel Rattus norvegicus 81 AABR07019437.3 ENSRNOG00000053672 ENSRNOT00000086016 1 1 1 80 15 105486018 105486037 ACTCTACACGATCCTTTCCT 58 105469188 105485975 CCCATGTTGAAAGGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051642.1 ENSRNOG00000057526 ENSRNOT00000084373 1 1 1 80 3 18601830 18601974 GATTACAGATGCCATACGTGAC 59 18602014 18602033 ATGGTGACAGTTTCTCCCAG 60 Novel Rattus norvegicus 81 AABR07064918.1 ENSRNOG00000053526 ENSRNOT00000087533 2 1 1 80 6 100671200 100673885 TTGAACAATGCAGGGACTC 58 100671138 100671157 TACTTCAGCCCTGGATTCTC 59 Novel Rattus norvegicus 81 AABR07020703.1 ENSRNOG00000057145 ENSRNOT00000086960 3 1 1 81 13 36027755 36029653 GAGACACAGAGTTTAACCAGG 58 36029696 36029714 TCCAGTGGTATGTCCACAG 59 Novel Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 3 1 1 83 3 33949904 33949927 GTGATAAGGTTCAGGATGAATTCC 60 33949969 33951506 CCTGATGCTCAAGAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065276.1 ENSRNOG00000056267 ENSRNOT00000080057 2 1 1 109 6 118718449 118732430 ATTTGAAAGGGCCACTAAGAG 58 118737362 118737380 GCTGAGGCAGAATTAAGCA 58 Novel Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 1 1 1 60 1 108839947 108840322 CTCCCTTGAGGATTGAAAGGA 60 108839907 108839925 GACCATGGAGCTGTTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033851.2 ENSRNOG00000060551 ENSRNOT00000089542 1 1 1 82 11 40534285 40557201 AACATTCAACTGAGGTTCGA 58 40534222 40534240 CTGTGGCACTTTCACTCTC 59 Novel Rattus norvegicus 81 AABR07021355.2 ENSRNOG00000060838 ENSRNOT00000088350 3 1 1 80 13 67483716 67483735 GGTACTCAGAATGGCAATCC 59 67483778 67516972 TCTGAGATTCCTGCTCCAG 59 Novel Rattus norvegicus 81 AC141136.1 ENSRNOG00000052394 ENSRNOT00000083923 1 1 1 80 11 43028696 43029958 CACACTCACCAGGAATCTG 58 43030002 43030020 TCATGCTCCAATTCTGGGA 59 Novel Rattus norvegicus 81 AABR07065343.1 ENSRNOG00000058233 ENSRNOT00000087375 2 1 1 100 6 121991281 121991299 AAAGATGCAGAAGCTTGGA 57 121991363 122000767 CTTCTGATCTGCACCTTGG 58 Novel Rattus norvegicus 81 AABR07034239.1 ENSRNOG00000059216 ENSRNOT00000078294 1 1 1 89 11 57994607 57995054 AGAATGCTACGGAGGTCAC 59 57994536 57994554 TTGATCGTTCGCATGTTCG 59 Novel Rattus norvegicus 81 AABR07021612.1 ENSRNOG00000054298 ENSRNOT00000087910 1 1 1 80 13 81482880 81482898 GCTCACGAAGTGACTTCCT 60 81482941 81507645 AGGCATCCTTAAGGACTGAG 59 Novel Rattus norvegicus 81 AABR07072876.2 ENSRNOG00000061268 ENSRNOT00000085572 1 1 1 80 3 62279710 62279728 TGATTAGCTGCTTGTCGTC 58 62279770 62282586 GTTGGTATGAGACTCTGTAGC 58 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 2 1 1 179 3 62621911 62622707 TTCTTCATGAGACGGCTGG 60 62621750 62621769 CATAAAGTGTTGGGTACGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004100.1 ENSRNOG00000057921 ENSRNOT00000081060 1 1 1 80 1 124743487 124756084 TACAGGACTTTGATATAGGCCT 58 124743428 124743449 GTAATCTTAGCACTTGGAAGGT 58 Novel Rattus norvegicus 81 AABR07065455.1 ENSRNOG00000052292 ENSRNOT00000080264 1 1 1 60 6 129095662 129095680 GCATCTTACTCACCCTGTC 58 129095908 129095926 TTCCACTGAAGTCTTGGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AC117091.2 ENSRNOG00000051430 ENSRNOT00000085948 1 1 1 80 13 92264076 92264096 AAAGCAGTGACAGATGAAAGG 59 92263904 92264038 GCGTTGTACTTCCTTATAAGGTC 59 Novel Rattus norvegicus 81 AABR07065476.1 ENSRNOG00000057859 ENSRNOT00000080761 2 1 1 117 6 130201941 130201959 CTCACCGCAAAGATCTCCT 60 130202037 130204242 TTCAAAGCACCTTCTTAGAACC 59 Novel Rattus norvegicus 81 AABR07004227.1 ENSRNOG00000058019 ENSRNOT00000084862 3 1 1 80 1 131139173 131140071 GATGCAGGATGAAGGTACC 58 131140112 131140133 TACTTGAGATGTAGCTTGACAC 58 Novel Rattus norvegicus 81 AABR07065593.1 ENSRNOG00000056013 ENSRNOT00000088117 1 1 1 81 6 136000342 136000360 ATAAGCACCAAGTGTCCAC 58 136002098 136002116 TAAGGCTTCTGAGAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000085939 1 1 2 80 3 83134273 83134291 GACTACCCAAGGGAGACAG 59 83082222 83134231 GTGAAGTTCCTGGAAATCCTG 59 Novel Rattus norvegicus 81 AABR07035012.1 ENSRNOG00000061869 ENSRNOT00000088456 1 1 1 255 12 3276231 3279607 GGAGTGATGTCTTAAGAAAGATGTC 60 3279820 3279838 TAGGACCTTCTTCCTGCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07035190.1 ENSRNOG00000061668 ENSRNOT00000084891 3 1 1 80 12 6544695 6550536 AATCCTATAACCGGACAGACTG 60 6550577 6550595 AAGTTCAGAAGGGTCCCAG 59 Novel Rattus norvegicus 81 AABR07065895.1 ENSRNOG00000055113 ENSRNOT00000085086 2 1 1 86 6 143879858 143879961 TAGTCCCTGCATATGTCCTG 59 143879791 143879809 AAGTCAGACTGAGGGTCTG 58 Novel Rattus norvegicus 81 AC126572.4 ENSRNOG00000059466 ENSRNOT00000086870 2 1 1 98 12 13210926 13210944 AGAGTCCTCCGCAATTTCC 60 13211003 13212067 GGCAAACAAGAAACAAATGGAG 59 Novel Rattus norvegicus 81 AABR07024616.1 ENSRNOG00000061034 ENSRNOT00000082153 1 1 1 110 16 9088169 9088189 ACAGATTCATGCATCGAACTC 59 9088261 9088427 CAGTTCCAGACCTGAGAGG 59 Novel Rattus norvegicus 81 AABR07053437.1 ENSRNOG00000059542 ENSRNOT00000091667 3 1 1 88 3 107017234 107017252 AAACAAGAGCAAGCTGAGC 59 107015465 107017185 ACTTCCTGTAACAAATGGAAGC 59 Novel Rattus norvegicus 81 AABR07024653.1 ENSRNOG00000055677 ENSRNOT00000085561 2 1 1 80 16 10355503 10355522 CTAGTCTGATCATTGCTGCC 59 10355565 10355653 GAGCTTTATCAGCCTCGTC 58 Novel Rattus norvegicus 81 AABR07053577.1 ENSRNOG00000052651 ENSRNOT00000083380 1 1 1 60 3 114650700 114650718 CATCCTCATCCTCTTTGCC 58 114651756 114651774 AAACACTGTCCTCCAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004761.1 ENSRNOG00000054312 ENSRNOT00000088739 2 1 1 128 1 154822724 154829901 TAACGAGTTTGCAGCTTACG 59 154829990 154830010 TGCAAAGTACAGCACTTACAC 59 Novel Rattus norvegicus 81 AABR07066829.2 ENSRNOG00000061319 ENSRNOT00000083121 1 1 1 80 9 18187316 18191708 TGAGATGTCCAAGTTCTCAG 57 18187255 18187274 TGCAAGGTCTATTGATCCTG 57 Novel Rattus norvegicus 81 AABR07035778.2 ENSRNOG00000055080 ENSRNOT00000085667 3 1 1 83 12 22297384 22298017 GACCATGTCGGGTATTGCT 60 22298063 22298082 CAGGGACAGTAAGTACAGCA 59 Novel Rattus norvegicus 81 AABR07066832.1 ENSRNOG00000053221 ENSRNOT00000086049 1 1 1 80 9 18443302 18443322 AGACCATGAGACTAAATTCCC 57 18443363 18445113 GCTGAGTCTCCTTACATGAC 58 Novel Rattus norvegicus 81 AABR07066841.1 ENSRNOG00000055149 ENSRNOT00000091305 1 1 1 80 9 18919148 18920198 CAGCCAACAATTGTTGTCAC 59 18919087 18919105 GCAAGATCCTACTCTGGCA 59 Novel Rattus norvegicus 81 AC133383.1 ENSRNOG00000060876 ENSRNOT00000084549 2 1 1 85 1 162733388 162733670 GGGATAGTTTCTGATTCTTGGA 58 162733716 162733734 CCTTTGCTCATGTACAGCA 58 Novel Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 2 2 3 68 12 22360250 22360268 CCAGAATTGAGTGTGGCTG 59 22360716 22360734 TAGGAATCCAGGTCTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004888.1 ENSRNOG00000056725 ENSRNOT00000082638 3 1 1 77 1 166120708 166120726 GCTATCACCATACCCTTCC 57 166119889 166119907 TTAGACCCACATGACAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067005.1 ENSRNOG00000061592 ENSRNOT00000078504 1 1 1 80 9 25871648 25871666 ATTCCCAGAACCCTGTTCC 59 25851255 25871605 CATGTGCATGATTCCTCAGG 59 Novel Rattus norvegicus 81 AABR07025178.1 ENSRNOG00000053455 ENSRNOT00000090846 2 1 1 146 16 30411271 30412653 TTCTTTCGAGACTCCTCCA 58 30412763 30412781 AAGTACATGGAAGGCTTGG 57 Novel Rattus norvegicus 81 AABR07035813.1 ENSRNOG00000058330 ENSRNOT00000090379 2 1 1 80 12 23130472 23130490 TGTGCTGGTTTATGCTTCC 59 23130533 23132394 AGGTCCCTTTAATACCAGCA 59 Novel Rattus norvegicus 81 AABR07025385.1 ENSRNOG00000054260 ENSRNOT00000077277 2 1 1 80 16 36261538 36261557 TATTCACCTTGTTGCAGCAG 59 36260082 36261500 CTGAGTGAATAATGTCCTGATGTG 60 Novel Rattus norvegicus 81 AABR07067210.1 ENSRNOG00000053227 ENSRNOT00000079131 3 1 1 94 9 35148330 35148348 GAAACAACACTGAGCAGCA 59 35148402 35150104 CCCATGGATACTCATCATATCTG 58 Novel Rattus norvegicus 81 AABR07067247.1 ENSRNOG00000060115 ENSRNOT00000079936 1 1 1 81 9 36488717 36488735 AAAGGAGAGGAGGACAGAG 58 36492627 36492646 TGAGACATTTCTCCAGTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036010.1 ENSRNOG00000060882 ENSRNOT00000090466 3 1 1 103 12 30502262 30509630 GAGGTTTCCCAGGGATCAG 60 30509695 30509715 GATGTTTAATCCCAGCACTCG 60 Novel Rattus norvegicus 81 AABR07067310.2 ENSRNOG00000057174 ENSRNOT00000080238 2 1 1 80 9 39537680 39537699 AATAACCTGGTCGTCATTGC 59 39534100 39537638 AATTAATCTGCAGGGTGAGC 58 Novel Rattus norvegicus 81 AABR07054292.1 ENSRNOG00000056483 ENSRNOT00000090611 1 1 1 80 3 146544751 146545803 CAAGACAGTATTCAGGAATGCT 59 146544692 146544712 TTGCTTCTGGGAAAGTTAAGC 59 Novel Rattus norvegicus 81 AABR07025799.1 ENSRNOG00000052272 ENSRNOT00000088099 3 1 1 95 16 50896032 50896050 AGCAGCTCTACCCAAACTG 60 50896711 50896731 CACTTCTGTAGCATGTTGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067402.2 ENSRNOG00000058672 ENSRNOT00000084225 2 1 1 80 9 43255285 43255813 TCCGTATTCACAAAGGCAC 58 43255856 43255875 TCTTCTGTCACTTGACACAG 58 Novel Rattus norvegicus 81 AABR07072936.1 ENSRNOG00000059752 ENSRNOT00000089535 3 1 1 127 3 148132315 148132333 TCTTGATCCCACAGAGGAG 58 148131686 148132227 CAAGATGATTTCATCAACGGTG 58 Novel Rattus norvegicus 81 AABR07036084.1 ENSRNOG00000060336 ENSRNOT00000081257 3 1 1 80 12 33922524 33924881 CTGCATTGGTGAATGTCGA 59 33922462 33922480 GCAGGCAATCAGGAAAGTC 59 Novel Rattus norvegicus 81 AABR07067469.2 ENSRNOG00000053542 ENSRNOT00000092197 1 1 1 80 9 47970460 47970478 AGTACTTCGTGATCCCACC 59 47970520 47970638 CGCTGATGAGGAATAAGTTGG 59 Novel Rattus norvegicus 81 AABR07054445.1 ENSRNOG00000054537 ENSRNOT00000089702 1 1 1 60 3 153935314 153935333 ACACGTAGACAGAGACAAGG 59 153934279 153934298 GATTGTTGCCACTTTGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 1 2 2 81 1 200364479 200364500 TGTAAAGTCACCAAGATTGCTG 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 1 2 2 94 3 154850624 154850642 ATTACAGCTTCTGCAGCAG 58 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07036407.2 ENSRNOG00000054442 ENSRNOT00000080098 3 1 1 81 12 42217775 42218146 GGGACTAAAGTTTGTTCCCA 58 42218188 42218208 CAGAAATGAAGAACCAAGGTG 58 Novel Rattus norvegicus 81 AABR07005921.1 ENSRNOG00000057633 ENSRNOT00000078400 1 1 1 80 1 206532499 206532517 CCTCACTCAAGAGTCCCTG 59 206532556 206541734 CTCATGTCTCCATACTTGTTAAGG 59 Novel Rattus norvegicus 81 AABR07036413.2 ENSRNOG00000057715 ENSRNOT00000080265 2 1 1 65 12 42566880 42566898 GATGAAGGAGCGATGTCTG 58 42568531 42568549 GAAGAACAAAGGCTTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 3 1 1 60 12 42899757 42902404 GGAATCCCAAAGTAACAGACC 59 42899717 42899736 ATTGGATTATTGCGGATGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067749.1 ENSRNOG00000051735 ENSRNOT00000088574 1 1 1 105 9 60881860 60883672 TCATGATGATCAGGTCAGGA 58 60881774 60881792 GAAAGTGTTGCAGGAAGCT 59 Novel Rattus norvegicus 81 AABR07026143.1 ENSRNOG00000051381 ENSRNOT00000077335 1 1 1 87 16 65369848 65369866 AGACGGAGTTTGTATCGCA 59 65369284 65369303 CGTAATCTACCTCAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067767.2 ENSRNOG00000061265 ENSRNOT00000085441 1 1 1 80 9 62499135 62499155 CCTAACAGAGAAGTAACGTCC 58 62485681 62499093 ATTTCTGGACCTTTGCCTG 58 Novel Rattus norvegicus 81 AABR07005977.1 ENSRNOG00000052216 ENSRNOT00000084257 1 1 1 93 1 210517470 210517488 CAGCAAAGCCATGGAAAGG 60 210516048 210517415 GATTTCAGGCAACTTCCATCC 60 Novel Rattus norvegicus 81 AABR07054597.1 ENSRNOG00000056015 ENSRNOT00000080316 2 1 1 84 3 163006939 163008517 AAATCAACTGGAGCCAAGAG 58 163008564 163008582 AAGCAGAAGGAGTTGTCAC 58 Novel Rattus norvegicus 81 AABR07026281.1 ENSRNOG00000054991 ENSRNOT00000083606 1 1 1 85 16 70487185 70487203 CATCTCTTCCTACGCAGGG 60 70484463 70487136 AGAAAGGTAGCTCGCAGAG 59 Novel Rattus norvegicus 81 AABR07026377.1 ENSRNOG00000061180 ENSRNOT00000082297 2 1 1 60 16 74513535 74513554 CAAAGTGGTTGGATTGGACC 60 74515448 74515466 CAAAGCAATGTGCTCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006120.1 ENSRNOG00000056396 ENSRNOT00000091992 1 1 1 80 1 222972209 222973710 TGACTCAAGAAATGCAGATCC 58 222972149 222972169 CAGTACTTGTCAAAGAGGCAG 59 Novel Rattus norvegicus 81 AC131024.2 ENSRNOG00000058055 ENSRNOT00000086662 2 1 1 68 3 170332311 170334187 GGCTTCTATTGGATATGTCCT 57 170332263 170332282 TTAGATTGATCTGCGTCCTC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07037607.1 ENSRNOG00000058086 ENSRNOT00000083399 3 1 1 82 X 25122059 25249902 GGTCAAACGTAACAAGAAATGG 59 25249944 25249963 AACTGTAGTACGGATGGGTC 59 Novel Rattus norvegicus 81 AABR07037698.1 ENSRNOG00000054904 ENSRNOT00000080867 2 1 1 82 X 28578703 28582287 TTGTGCAGGATCATATTGTTGG 59 28582330 28582348 CAAGCACCTTTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07006428.1 ENSRNOG00000055431 ENSRNOT00000079050 3 1 1 60 1 233254971 233254989 GGAAGGGCACTTCATATCC 58 233254929 233254947 TTTCTGAGGAAGAAGCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037927.1 ENSRNOG00000054850 ENSRNOT00000087600 2 1 1 154 X 35554537 35554555 GATCCTGCAGAAGATTGGG 58 35554670 35599134 TAAATGAGTCCCTGGAATAGAC 57 Novel Rattus norvegicus 81 AABR07068198.3 ENSRNOG00000056997 ENSRNOT00000088218 2 1 1 60 9 89722441 89722460 GTTGACTTTAATGTCGGCCT 59 89719306 89719326 AATGAGGATGGAGGTAAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.4 ENSRNOG00000061728 ENSRNOT00000079557 2 1 1 80 16 82332566 82332585 AGCTTATCACGATGGTCTGG 60 82332628 82333253 CACAGAGAAGCAATGAGCG 59 Novel Rattus norvegicus 81 AABR07072528.4 ENSRNOG00000061728 ENSRNOT00000079557 3 1 1 80 16 82333264 82333282 GACTCTATGGAAAGCGCTC 58 82333326 82341356 TTCACGTCTGTTTCTCTGC 58 Novel Rattus norvegicus 81 AABR07026544.1 ENSRNOG00000053489 ENSRNOT00000078356 1 1 1 80 16 82576268 82576286 CCTAGGTGACTCGAAATCC 57 82573102 82576224 CTTCGACCCTTAGAAGGTG 57 Novel Rattus norvegicus 81 AABR07039139.2 ENSRNOG00000052595 ENSRNOT00000077149 1 1 1 98 X 69207718 69207736 AATAACCATTGGTGGCTGG 58 69212239 69212257 CTCTTCTGGTGGGTTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000088213 3 1 2 85 1 244421283 244436944 CTTCCAAGAAGTGCTGGGA 60 244421216 244421238 GAATAGCTTACCAGTTAGAGTGC 59 Novel Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000077323 1 1 2 78 X 72723956 72723974 TATGTACGCATACGGACCA 58 72724510 72724528 TCTCTTCTCGGTGTTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068341.1 ENSRNOG00000059110 ENSRNOT00000077785 2 1 1 81 9 99565476 99565989 AAAGTGAAGTCACTCTGCC 58 99566034 99566052 CCAGTTCTCGAAGACTCTG 57 Novel Rattus norvegicus 81 AABR07026668.1 ENSRNOG00000060488 ENSRNOT00000089987 2 1 1 135 16 88852444 88852462 CACATTGCAGTTGCAATGC 59 88851166 88851184 GCACTAGCTGAGTCTTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026924.1 ENSRNOG00000059954 ENSRNOT00000082088 3 1 1 81 17 5016818 5016935 TCTCCCTTATATGGCAACCT 58 5016979 5016997 ATGTCTTTGGAGGAAGGCT 59 Novel Rattus norvegicus 81 AABR07068554.1 ENSRNOG00000060095 ENSRNOT00000079939 3 1 1 80 9 108257974 108278528 AGTACAAGTTTCCATGCTGC 59 108257913 108257934 AAAGTGACAAGCTAGCTTTCAC 60 Novel Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 1 1 1 75 7 24031892 24034056 TGGGTCCTGAACTGAATAGAG 59 24034093 24034111 AAAGGCTACCACAGTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040444.1 ENSRNOG00000058509 ENSRNOT00000089676 1 1 1 80 X 100578840 100616889 GAAGACTTCTGAGTGCTTATTCTC 59 100616928 100616946 TGTGAGCACAGTACAGGAG 59 Novel Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 1 1 1 69 1 251400935 251400953 TGTAGTCACTGCTGAAGCA 59 251387973 251400904 ATCTTATGAAGGAGAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042654.3 ENSRNOG00000060758 ENSRNOT00000079060 3 1 1 80 19 1527104 1572475 TTGTCCACGCAATGAAAGTC 60 1527043 1527061 TTCCAGAGCCCTTCTTCTG 59 Novel Rattus norvegicus 81 AC096330.1 ENSRNOG00000052291 ENSRNOT00000081446 2 1 1 81 1 256934622 256935410 GTTTGAACACAGGTTTGATCC 58 256934561 256934579 CGTCACAATGGTGGTTCTC 59 Novel Rattus norvegicus 81 AABR07027007.1 ENSRNOG00000056763 ENSRNOT00000086596 2 1 1 60 17 10451425 10451443 TATCAAGAGGGAGCAGCAG 59 10450781 10450800 TGGTTCATCTTCTGGAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 3 1 1 71 19 3734259 3742490 AGAATGAATGGCTTCAGAAGAC 59 3734209 3734229 ACATGCCAGTATTTAGAAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027028.1 ENSRNOG00000056293 ENSRNOT00000091958 2 1 1 80 17 11605361 11605381 AAGTGGATAAGACTTGACGAC 58 11602381 11605321 CATCACTTTCTGGTAGTTGGG 59 Novel Rattus norvegicus 81 AABR07056608.1 ENSRNOG00000057371 ENSRNOT00000083969 3 1 1 80 7 32076172 32076194 GAACCTCTATTTCTTGTCTGCTC 59 32076234 32082160 ATGGTTTCCTTCCCTCAGC 60 Novel Rattus norvegicus 81 AABR07006888.2 ENSRNOG00000061256 ENSRNOT00000090950 2 1 1 81 1 262854181 262854200 GGGAAATGTTCTTGAGGCTG 59 262851693 262854137 GCTCCTTCACTTTGCTTCC 59 Novel Rattus norvegicus 81 AABR07069067.1 ENSRNOG00000060166 ENSRNOT00000077688 2 1 1 66 8 6963066 6987213 TCTTTGCCCAGTTCAAGGA 59 6963018 6963037 ATTTGTAGGCAGTCTGACAC 58 Novel DesignRelaxed Rattus norvegicus 81 AC105485.2 ENSRNOG00000056655 ENSRNOT00000083963 3 1 1 107 1 264975533 264976516 GATTGAAGGAGGAGTCCGG 60 264975444 264975462 TTAAAGGTGTCAGGTGGCT 59 Novel Rattus norvegicus 81 AABR07042903.2 ENSRNOG00000057776 ENSRNOT00000082870 3 1 1 93 19 14433099 14440451 ACTCATGAGATCTGAGTCCAC 59 14440506 14440524 TCGGAATTGAACGCCTAGG 60 Novel Rattus norvegicus 81 AC097778.1 ENSRNOG00000056945 ENSRNOT00000090397 3 1 1 81 8 13398714 13403857 CAAGAATCCCACCATGGAC 58 13403901 13403920 AGGGTATAACTCGCTTTCCT 58 Novel Rattus norvegicus 81 AABR07043031.2 ENSRNOG00000053855 ENSRNOT00000087349 3 1 1 80 19 18035549 18035567 TGTTGACTTCAGCCTCAGG 60 18035607 18072189 CATTAAGGAATACCTTGGCTGTG 60 Novel Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 2 1 1 61 1 272859338 272859359 CTGTGGAAAGAATGATAGATGC 57 272858844 272859318 TTTCGTTCCATGATTCAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057219.1 ENSRNOG00000052947 ENSRNOT00000091352 2 1 1 65 7 61163831 61163849 GCTTAAGATCTCCATGGGC 58 61154324 61154343 CATACTGTACAAGCTGCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC115255.1 ENSRNOG00000052176 ENSRNOT00000084663 2 1 1 80 1 274135150 274135169 CAACTAAACCACAAGGCCAG 60 274133639 274135108 TAGGCTCTAAAGCATTCCGT 59 Novel Rattus norvegicus 81 AABR07069633.1 ENSRNOG00000061559 ENSRNOT00000079468 1 1 1 83 8 35514714 35536395 CCTAAGAAACTGGTCCCAC 58 35506658 35506679 GCAATAGATGTGAAGATTCTCC 57 Novel Rattus norvegicus 81 AABR07027526.1 ENSRNOG00000052525 ENSRNOT00000083869 3 1 1 140 17 35532583 35542282 GATGGATGAGAGCAGGACC 60 35542384 35542404 TCCAGGAATTTACTCGTCAGG 60 Novel Rattus norvegicus 81 AABR07043642.1 ENSRNOG00000051454 ENSRNOT00000082783 1 1 1 60 19 33801214 33801235 GAGGACCCTTCTATGAATAGGA 58 33800644 33801193 CTTCTTTGTTGCTCCTTGC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043652.1 ENSRNOG00000055381 ENSRNOT00000081411 1 1 1 80 19 34016743 34018808 GCCTTCTCCTCATTGTTACAG 59 34016683 34016702 GCAGTGACTCACTAAGTCCA 60 Novel Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 2 2 2 80 7 75853237 75853944 GAAAGATTCTGACAGGAATGAGC 60 75853982 75854002 ACATACGGTTTCCACATTGAC 59 Novel Rattus norvegicus 81 AABR07057610.1 ENSRNOG00000053590 ENSRNOT00000080792 3 1 1 88 7 80112828 80112851 ATGACTAGACTCTACCGTTATAGG 59 80100029 80112784 CCTATTAAACACCAATTCTGGC 58 Novel Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 2 1 1 60 7 80270624 80270646 GTTGTACATTCACAAGTCTCAGG 60 80270666 80283148 CATCAATTACACCGGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028981.1 ENSRNOG00000053206 ENSRNOT00000090214 3 1 1 81 10 1565690 1566475 TCCATCTCAGAACAGGACC 58 1566520 1566538 GCACAGAGAAGGTCAACAG 59 Novel Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 3 1 1 60 7 83991191 83991211 TGACCTGAAAGTTCTGAATGC 59 83989708 83991169 CTCCATGTCTGGAAACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029260.1 ENSRNOG00000058259 ENSRNOT00000090851 1 1 1 80 10 18546770 18546788 CCTTGCAAATTGAGCTCGT 59 18546829 18549652 TTTCACAGTTCAGAAGGTTCTG 59 Novel Rattus norvegicus 81 AC141541.1 ENSRNOG00000055007 ENSRNOT00000078418 3 1 1 80 8 54892418 54892437 CTGTTTGTGCCTAACACCTG 60 54888215 54892377 GGAAATGTCTCCATTCCTCCA 60 Novel Rattus norvegicus 81 AABR07041361.1 ENSRNOG00000058857 ENSRNOT00000077982 3 1 1 62 X 127335792 127335811 AGTATCCAAGGTATCCACCA 58 127334990 127335009 ATTACACCTGCTTCAAGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070161.3 ENSRNOG00000054536 ENSRNOT00000080447 2 1 1 68 8 55526252 55526270 ATTGCTTCTTGTCTGCCTG 59 55523993 55526223 GCTCTGATAGAAGAAGGAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 2 1 1 62 7 105102034 105102058 CTTCAGATGTTAGTCATCTTCTGAG 59 105102076 105122142 GGTTCTTAGCTCAGGATTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070161.7 ENSRNOG00000060683 ENSRNOT00000081043 2 1 1 60 8 55539910 55539929 CCTCAGAGTTGAAGGGAGTC 60 55538884 55538904 AAACCATTCGAGGTCTACCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007717.1 ENSRNOG00000056427 ENSRNOT00000084325 3 1 1 84 2 25564976 25564994 CTGGAAACCTGATGCAGAC 59 25565473 25565491 CATCAGTCCTCTGAGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122 1 1 2 78 X 137478042 137478060 GAAATTGGTGATGGGCCTG 59 137473722 137473740 TTGTCTTCAGTTCTCCCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029526.1 ENSRNOG00000053102 ENSRNOT00000081031 3 1 1 85 10 32637275 32695138 TGAAGGAGACATAGAAGAACCC 59 32637211 32637232 GCAACAATGTCCTTAACTTCCA 60 Novel Rattus norvegicus 81 AABR07041772.1 ENSRNOG00000060140 ENSRNOT00000089262 1 1 1 80 X 139264425 139281583 TGTTTCCTTTCAGCTGTGAC 59 139281623 139281644 CTTACCTACTACAACACCAAGC 59 Novel Rattus norvegicus 81 AABR07007789.1 ENSRNOG00000053598 ENSRNOT00000083326 2 1 1 69 2 28264025 28264043 GTTTCTGCAGGAGTGAGGA 59 28282275 28282293 TTCCGGTCAAGTCTCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042301.1 ENSRNOG00000061805 ENSRNOT00000090347 2 1 1 82 X 152194208 152194227 ACATTATCAGAGCAGCAGAG 58 152194272 152195080 GACCAGTAACCTAGACTGC 57 Novel Rattus norvegicus 81 AABR07058511.1 ENSRNOG00000061168 ENSRNOT00000090660 3 1 1 84 7 121438590 121456066 GAACAATGTGAGGCCAGAG 59 121438524 121438542 TAGGTGGGTATGGGTACCA 59 Novel Rattus norvegicus 81 AABR07027870.2 ENSRNOG00000061816 ENSRNOT00000085839 2 1 1 81 17 47712630 47712648 ATTTGGATCCGAGTTCCGG 60 47711953 47712588 AGTTTGTCAAACATGTCCTCTC 59 Novel Rattus norvegicus 81 AABR07027961.1 ENSRNOG00000058818 ENSRNOT00000085858 2 1 1 80 17 51105083 51105101 GCTTTGTACTTGAGCCAGC 60 51105145 51112694 AGCCAGAGACCTACAAACC 59 Novel Rattus norvegicus 81 AABR07058985.1 ENSRNOG00000053300 ENSRNOT00000088476 2 1 1 82 4 84365 86124 CAGGCTTTGTCAATGACTCTC 59 86168 86186 CTTCTGCTGCATCTGAAGC 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 2 2 2 80 4 106457 107902 TAGCTGAGTCACTACCTGG 58 107945 107964 GAGGAAGTTCCATGAGAGGA 59 Novel Rattus norvegicus 81 AABR07070518.1 ENSRNOG00000054131 ENSRNOT00000079964 2 1 1 89 8 73534038 73534056 GAGTTCTGTTGAGCCACAC 59 73533172 73533986 GCAGACAATTCGGATCAGAG 59 Novel Rattus norvegicus 81 AABR07028137.1 ENSRNOG00000056440 ENSRNOT00000077647 3 1 1 94 17 57731435 57731455 AGCAAAGAAGGCAGATTAGTC 58 57730985 57731379 ATGATCTTCAGCCCTGGAG 59 Novel Rattus norvegicus 81 AC132760.2 ENSRNOG00000061881 ENSRNOT00000088800 1 1 1 60 20 7693418 7693438 CAGAAAGAAGGAAGAGGAGAG 58 7691676 7691694 ACTCATTCTTCCTCCAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059024.1 ENSRNOG00000057275 ENSRNOT00000078417 1 1 1 60 4 1983457 1983476 AGCACTGCTATTCAGAGTCC 60 1983416 1983436 CTTACTTTCCCAGTCCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007980.1 ENSRNOG00000053154 ENSRNOT00000077467 3 1 1 94 2 36967188 36969575 GCTCTTCCCAAGAACACTG 59 36967112 36967131 GCAAGAATCACAAACAGCCT 60 Novel Rattus norvegicus 81 AABR07007980.2 ENSRNOG00000057850 ENSRNOT00000082352 1 1 1 81 2 37032021 37032042 CATGAGACCTACAAAGACTGTG 59 37023647 37031979 CCACGATTACACTGGTTGG 59 Novel Rattus norvegicus 81 AC141961.1 ENSRNOG00000052083 ENSRNOT00000082004 2 1 1 95 20 14756043 14768817 TGATGGAAGTTGTGACAGG 57 14755966 14755985 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 3 1 1 63 4 16953757 16953776 AGTTGAAATTCTCCAGTGCA 58 16953313 16953734 ATCTGGTAAATGATCTGGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC112030.1 ENSRNOG00000051486 ENSRNOT00000081349 3 1 1 68 4 26533360 26548462 TCTCTACAAACACAGAGAAGAC 58 26548490 26548509 AGTTTACTTCGATGCACCCT 60 Novel DesignRelaxed Rattus norvegicus 81 AC094253.1 ENSRNOG00000059771 ENSRNOT00000085697 2 1 1 94 4 29027383 29027401 TGACTTATACGGTGCCCTG 59 29027457 29047491 CAGTCGTTCCTGTATAATGCA 58 Novel Rattus norvegicus 81 AABR07044796.1 ENSRNOG00000055711 ENSRNOT00000089837 3 1 1 80 20 20925351 20930987 GAGTTTCCTCAGTTCGTCAG 58 20931025 20931048 CTCAGTTCATGATCTACAGAATCC 59 Novel Rattus norvegicus 81 AABR07028513.1 ENSRNOG00000052052 ENSRNOT00000085056 2 1 1 81 17 73142335 73142354 AATCATGGTACTCCACAGCC 60 73142398 73143338 CAACCGTGGCTTCTTTCTC 59 Novel Rattus norvegicus 81 AABR07028513.1 ENSRNOG00000052052 ENSRNOT00000085056 3 1 1 83 17 73142333 73142353 GAAATCATGGTACTCCACAGC 59 73142398 73143338 CAACCGTGGCTTCTTTCTC 59 Novel Rattus norvegicus 81 AABR07059780.1 ENSRNOG00000060558 ENSRNOT00000089406 2 1 1 85 4 35409354 35409375 GATTAGAGCAACTGACAAAGGA 59 35409418 35427074 CAATTGCCAAGAAATCACTCTG 59 Novel Rattus norvegicus 81 AABR07071117.1 ENSRNOG00000057191 ENSRNOT00000078753 2 1 1 80 8 100728685 100728708 CATAACTATCTGAAGAGTTGCACC 60 100728742 100741376 CCTCTTGTATTCCTCTATGATTGC 59 Novel Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 1 1 1 60 2 44645852 44647341 GTCATCTGACATATTTCTTGGC 58 44645813 44645831 CAAGGTCTTCCGATTAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 3 1 1 61 2 44645852 44647341 GTCATCTGACATATTTCTTGGC 58 44645812 44645831 TCAAGGTCTTCCGATTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028793.1 ENSRNOG00000056309 ENSRNOT00000083259 3 1 1 89 17 86593652 86595011 AAACCTAAGCTTCAGCTCTC 58 86593582 86593600 TTTCAAATGGCAGGATGCA 58 Novel Rattus norvegicus 81 AABR07028795.2 ENSRNOG00000061547 ENSRNOT00000091727 1 1 1 81 17 86637738 86640217 GATGGCTGAATTCCTTGACC 59 86637676 86637694 TAGGACGTGTGAAACCGAG 60 Novel Rattus norvegicus 81 AABR07008256.1 ENSRNOG00000052551 ENSRNOT00000077833 3 1 1 97 2 49790316 49790335 CCGAATCAACTGTACCTCTC 58 49790395 49790770 ACTCCAGATGAAAGCACAG 58 Novel Rattus norvegicus 81 AABR07071332.1 ENSRNOG00000058189 ENSRNOT00000090179 3 1 1 103 8 109773217 109773727 CCTCAGGTCTCAGGTTCAG 59 109773132 109773150 TTTGTGAGATGCTGTCGGT 60 Novel Rattus norvegicus 81 AABR07045105.1 ENSRNOG00000058455 ENSRNOT00000077919 3 1 1 103 20 33983849 33985605 CAGTGAATATGACTCTATCACTGTG 59 33985663 33985684 GTTCTACCACAGTATCCAACCA 60 Novel Rattus norvegicus 81 AABR07071374.1 ENSRNOG00000061212 ENSRNOT00000087863 2 1 1 84 8 112487990 112488261 CTAAGCTCAAGGCTAGTGAC 58 112487925 112487947 CACTGGTATAGATTCCATCTGAC 58 Novel Rattus norvegicus 81 AABR07071385.1 ENSRNOG00000056504 ENSRNOT00000077851 2 1 1 64 8 112996286 112996305 TCAGTATCATCCCTGCTCTC 58 112993115 112993133 TCTGTATGGAACCAAGGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045313.1 ENSRNOG00000052239 ENSRNOT00000080484 3 1 1 97 20 42398709 42398727 CTTCTGGAGATTGCCACAC 59 42399937 42399955 TGATGTGAATGGAGTTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045318.1 ENSRNOG00000051397 ENSRNOT00000082979 2 1 1 64 20 42684375 42687058 CCGACCTTAGTAAATTTCTGGA 58 42684332 42684354 AGCCCTCTACTTCTCAAATAGAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07060318.1 ENSRNOG00000058306 ENSRNOT00000086478 1 1 1 70 4 67100564 67100582 AACTGGTTTGGGAAAGCTG 59 67103094 67103112 ATATTGCCCACTGAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000082424 3 1 2 93 8 118464900 118464918 GGTTCAGCTAACTGCTGTG 59 118464971 118465232 TAAGTAGACCCTATGCAACTGTC 60 Novel Rattus norvegicus 81 AABR07045400.1 ENSRNOG00000054936 ENSRNOT00000091453 3 1 1 93 20 46316868 46318613 CCCTTTGTAAAGGTCAAGCC 59 46318667 46318687 GGTGCATTAACTCGTCTAGTC 59 Novel Rattus norvegicus 81 AC098284.1 ENSRNOG00000059808 ENSRNOT00000088947 1 1 1 80 8 121095859 121124378 AAGAGTACAGTTCTCCCTCAG 59 121095799 121095818 GAATATTCCACGGTGAGCAG 59 Novel Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 1 1 1 60 2 63732562 63734648 AAATGAGACCTTTCCAGCC 58 63734672 63734690 AGTGTACCCTCTGAGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045510.1 ENSRNOG00000056096 ENSRNOT00000078632 3 1 1 82 20 49773013 49874161 CCTTCTTATGCAACAGCCC 59 49772949 49772967 AGTAACAGCACACGGAGTC 60 Novel Rattus norvegicus 81 AABR07043844.1 ENSRNOG00000059155 ENSRNOT00000082617 3 1 1 89 19 43534888 43534906 CTGGAGTCTGAGGACTCAG 59 43534957 43536183 ACTGATCCTACTGGAACACTG 59 Novel Rattus norvegicus 81 AC096072.1 ENSRNOG00000052736 ENSRNOT00000080286 2 1 1 63 4 81789788 81789806 TAATGGTTCGAACGTTCCC 58 81791889 81791907 CATTCTTCTGTTCGCTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043928.1 ENSRNOG00000053616 ENSRNOT00000086963 1 1 1 85 19 48222121 48222142 GTCCATTAATCAGGACAATAGC 57 48220961 48222076 GAAGGGCTCAACAAATTGTG 58 Novel Rattus norvegicus 81 AABR07071659.1 ENSRNOG00000051659 ENSRNOT00000078088 3 1 1 60 8 126171968 126176403 CCAGCGATAGATTGGTCGA 59 126171926 126171945 GCGCTCCTATTTAATTCGCT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 3 1 1 89 8 129157659 129157677 GAATGCACTACCAATCCCG 59 129156252 129157607 ATATCTAGTACCAGGCACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058758.1 ENSRNOG00000054356 ENSRNOT00000091363 1 1 1 80 7 136490760 136490781 AAGAGTTAGACGTATTGGATGG 58 136462240 136490720 AAACTCCATGGCCTTAAGTG 58 Novel Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000086732,ENSRNOT00000087127 1 2 2 60 7 137518217 137518237 CAACACTTCTTCTAACAGCAG 57 137516098 137516116 CTGTTCAGTGCAAACAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009028.1 ENSRNOG00000051925 ENSRNOT00000080377 2 1 1 61 2 84160020 84160038 CTGACACCAACTTGTCCAG 58 84127611 84159995 TGCTTAGTGTCTTCGCCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07058838.1 ENSRNOG00000056773 ENSRNOT00000081717 2 1 1 112 7 138983467 138988986 CCTCTGTCTGATCTTGAATAAGAG 59 138983378 138983399 CTTTCAACATTCTCTGAAGCAC 58 Novel Rattus norvegicus 81 AABR07007078.2 ENSRNOG00000061164 ENSRNOT00000078143 2 1 1 80 1 279710210 279713218 CTTCCTAATGAGAATCCGTGC 59 279710150 279710169 TCTTCCTGTCTTCACTTCCT 58 Novel Rattus norvegicus 81 AABR07007088.2 ENSRNOG00000058931 ENSRNOT00000081935 2 1 1 80 1 280299190 280299208 CAGGACAATGCTGTTTGCA 59 280298003 280299149 TCCTTTGGTTTGAATTCTCTGG 59 Novel Rattus norvegicus 81 AABR07009639.1 ENSRNOG00000053422 ENSRNOT00000088480 3 1 1 80 2 106849338 106850651 GAGCAGTGACTACAATGAACC 59 106850693 106850711 CTCCTTCCTCCTGGTTGAG 59 Novel Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 1 1 1 69 2 119558797 119560949 GAATAATGTCCACTCCTTGGT 58 119560978 119560998 CCTGCAGAAATATCCTTTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010330.1 ENSRNOG00000054694 ENSRNOT00000083936 3 1 1 81 2 132338477 132339216 GGAGGAAAGTCCTATAGCAGG 60 132338416 132338437 TGACCTTAGAACGTCTTCAGTC 60 Novel Rattus norvegicus 81 AC111231.1 ENSRNOG00000052809 ENSRNOT00000083792 2 1 1 62 2 150267187 150267206 TCCTCAAGAGATACAGCCAG 59 150268085 150268109 GGTATGAGTCTTAGAGTTTCAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 2 1 1 63 2 155301997 155303700 TGTAGCTTCAGTCTTAAAGGAC 58 155303723 155303742 TAAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 3 1 1 62 2 173565574 173565594 ATGTGTTCTGGTAGCTCAGTC 60 173565618 173568522 TTTGACAGTGCTGTAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC098750.5 ENSRNOG00000058324 ENSRNOT00000091819 1 1 1 80 2 188600975 188601807 TGGTGTCCTCTAAGATTTGGT 59 188600915 188600934 AGGATAGAGGAACGGATGTG 59 Novel Rattus norvegicus 81 AABR07014272.1 ENSRNOG00000051753 ENSRNOT00000077352 3 1 1 80 14 6556736 6556804 GCATGGTATACATGCCACG 59 6556845 6556866 TGATAGGTGCATACTCTGACAC 60 Novel Rattus norvegicus 81 AABR07014342.1 ENSRNOG00000061516 ENSRNOT00000086333 2 1 1 60 14 10297107 10297127 GTCAACCTCAGAGCATTTCAG 59 10296713 10296731 GCAGCCTGATTATGTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC131411.2 ENSRNOG00000053017 ENSRNOT00000078024 1 1 1 104 14 11321916 11321934 TGACGATCACCTACAGCTG 59 11316947 11316965 CTTGCCTAAGCACCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013123.1 ENSRNOG00000051918 ENSRNOT00000085477 3 1 1 61 2 223607700 223607718 TCCTCTCCCTTCTTCACTC 58 223609740 223609762 CTGTGGTTCTCTAGAAAGTAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013167.1 ENSRNOG00000060865 ENSRNOT00000083669 3 1 1 99 2 225932276 225937085 CTGAGATGCTACAAGGTGC 58 225932195 225932213 CAGCTTGACCAGAATCCTC 58 Novel Rattus norvegicus 81 AABR07013672.1 ENSRNOG00000058016 ENSRNOT00000090184 2 1 1 80 2 248923044 248923062 AAGTTGTCTGTCTGCTCTG 57 248923105 248924493 TGCCATTATCACTTACCGTC 58 Novel Rattus norvegicus 81 AABR07013914.1 ENSRNOG00000058005 ENSRNOT00000077348 1 1 1 83 2 262799848 262803677 CCTGATAGGTGAACTACAACAG 58 262803721 262803739 AACAGGTGACTGTCACTCC 59 Novel Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 3 2 2 90 X 22399683 22399827 TACGGAGACTAGAGGTCCG 60 22399611 22399629 GGGTATCGTCTGGAGAGGA 60 Novel Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 3 1 2 66 2 52609142 52609160 TCACCAAACTTCCTCAGGA 58 52591293 52591311 AGTTTGGTGAGGGTTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054919 ENSRNOT00000091314 1 1 1 60 1 61974154 61974176 CGATACAGAGAAGATTAGCATGG 59 61974116 61974135 AATGCTTCACGAATTTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016640.1 ENSRNOG00000037522 ENSRNOT00000056827 3 1 1 160 14 108915925 108915946 AGCATCTTACCTTCATATGCAG 58 108916066 108916086 CGGGCTTTCTCTTTAATATGC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000061222 ENSRNOT00000083138 1 1 1 60 4 176412407 176412427 ATCTGTCATGCCATCAATCAC 59 176412449 176412467 GATACCTGCTTAGCCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061222 ENSRNOT00000083138 2 1 1 60 4 176412409 176412428 CTGTCATGCCATCAATCACC 59 176412451 176412469 AGGATACCTGCTTAGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052974 ENSRNOT00000080430 1 1 1 60 4 174975415 174975435 CAAACAAGCTCTCAAGAAACC 58 174975375 174975396 TTATGACTGCCTAATAGTAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039648.1 ENSRNOG00000002789 ENSRNOT00000003730 2 1 1 60 X 81817032 81817054 GAACATGAAGATCAAGTCCTTGG 60 81816994 81817012 AGACTCCTTAATGGGCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000090573 1 1 2 80 15 36897696 36897714 CATTCCAGTTCTGCCTTCC 59 36897758 36898027 TGGGATGAATCCTACCAGG 58 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 3 2 3 80 9 4093076 4093095 ACAACTGGAGTCAGATTCAG 57 4093137 4097384 ATGTTGTCCCTGATTTAGGG 57 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043 3 1 2 87 10 4487999 4488719 CAGGCGACGATAAGAAAGG 58 4488769 4488788 TTTCACTCCCATTCAACAGC 59 Novel Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 1 1 1 75 1 165284442 165284463 TCCCACTGATATTTCTAAAGCC 58 165284500 165284518 GTAGAGCAGGAAAGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067 1 1 3 108 13 75158232 75158775 GAGCAAAGATGCTATACAGATGAC 60 75158842 75158860 AGGAACAGAAGCCTCACAG 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 2 2 4 87 5 171667126 171668412 TAAGAACCAGGCATACGCA 59 171667057 171667075 CAACCAAGCATCCAGTGAG 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 3 2 4 88 5 171667127 171668413 CTAAGAACCAGGCATACGC 58 171667057 171667075 CAACCAAGCATCCAGTGAG 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127 3 1 4 81 1 49290238 49425763 GGATGTCAGGAACCCTGTC 60 49290175 49290194 GACACAGTACAAGTGGAAGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051460 ENSRNOT00000088709 1 1 1 60 14 13670700 13670718 GAGAAGATTAGCATGGCCC 58 13670742 13670760 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055805.1 ENSRNOG00000047335 ENSRNOT00000044932 3 1 1 87 7 10194590 10194611 CTATGAATGTGATCAGTGTGGT 58 10194522 10194546 TCATAGGGTTTCTCCAGTATGAG 59 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000055658 3 1 3 96 5 164954759 164954885 TTCAGTCAGTTCAGACTCCC 59 164954944 164954962 ATTATGGTCGAGGACAGCG 60 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000085761 1 1 3 60 20 3365764 3365783 AGTCCTTCATCATTCACGAG 58 3365803 3365824 ACGATCCTATCATTACTGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000082425 3 1 3 60 20 3367355 3367373 CGTACACATGCTGTTCCTG 59 3367394 3367415 CTCTTACCGGTAAAGATCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060593.1 ENSRNOG00000008611 ENSRNOT00000011389 1 1 1 87 4 83096156 83096174 AGGCGATATTCTTGCTCAC 58 83096225 83096244 ATCTATGAAGCACGGACCT 58 Novel Rattus norvegicus 81 AABR07060593.1 ENSRNOG00000008611 ENSRNOT00000011389 2 1 1 87 4 83096157 83096176 GGCGATATTCTTGCTCACAC 60 83096225 83096245 GATCTATGAAGCACGGACCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059952 ENSRNOT00000091784 1 1 1 60 5 147361852 147361870 GAGAAGATTAGCATGGCCC 58 147361894 147361912 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053180.1 ENSRNOG00000058655 ENSRNOT00000090423 3 1 1 72 3 95731143 95731164 GGTTACCTGATGCTAAGAACAC 59 95731199 95731219 AGCAGTTTAGTCATCTGTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018272.1 ENSRNOG00000060272 ENSRNOT00000090328 1 1 1 60 15 49773121 49773139 GTTGAAGATGCAGAGCCTG 59 49773079 49773097 TCACTACACGACGGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000090885 2 1 2 80 13 96081278 96081299 GACGTGGGACATTATGATAGAG 58 96081337 96084634 AAACAAGGCCTATAGTTCTGAG 58 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077503 2 1 4 98 9 88309252 88309270 GGTGCACAAGGATCAACAG 59 88308032 88308243 AGGATCTCCCTTCATCCCA 59 Novel Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 2 2 2 101 2 208383487 208545141 CTTTCACCTGGCACTTCAG 59 208550238 208550259 TACACAAACGATCAGAATGGAC 59 Novel Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 2 1 1 61 4 183941459 183941477 CAGAAGGATCCTGGAGAGC 59 183941504 183941522 GATACTGCTTCAGACTCGC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000075256 1 1 2 118 2 208383459 208383477 TGACAACAGAGAAGACCGG 59 208385092 208392606 GAATGGACATTTCACCGGG 59 Novel Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 2 1 1 61 20 18046173 18046191 TGACGTGCATGAGGTTAGG 60 18046346 18046366 TCATCATCTTCTGAGCTAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290 2 1 3 97 X 73501494 73501512 CACACCAACAGAGGAAGAG 58 73501571 73502389 GATGTTGAACTTCAGCATCAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000059689 ENSRNOT00000082568 1 1 1 60 13 91063307 91063328 ATGAAGATGGTCTAGTTACACC 57 91063268 91063286 GCCAGATCAATGGAATCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snopsi28S-3327 ENSRNOG00000056898 ENSRNOT00000080118 1 1 1 65 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490246 150490264 AATTGTTTCTCTGGGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052341 ENSRNOT00000084070 1 1 1 60 19 56688534 56688557 ATACAGAGAAGATTAGTATGGCCC 60 56688575 56688594 GGAACGCTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059396 ENSRNOT00000083945 2 1 1 60 19 17244655 17244674 TGAGAAAGATTGGTCTTCGG 58 17244697 17244715 GCTGTCATCTATTGGTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052312 ENSRNOT00000081212 3 1 1 60 18 2024476 2024494 AAATAGCAGCCTTTGTGGT 58 2024518 2024536 CTCCCTTAGGGTGACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 3 1 1 62 4 155169732 155169753 AGGCTAAGAAGAAATCACTGGA 59 155169778 155169796 ATGTCTTACTAGCCGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 1 2 2 80 8 64822305 64825762 CAGAATGGAGCATGTGTTCC 59 64822244 64822262 GGGTCATGTCGTCTGAGAG 60 Novel Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 2 1 1 65 3 154986158 154986182 GTCTGGTTACACTTCTTACTTAGTC 59 154988854 154988874 CCAGTTGAAGCATAAATCCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 2 1 2 81 17 14947093 14947113 TGCAAAGAATGTGGAAGAGAC 59 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 3 1 1 60 2 131957275 131957295 CATTCTTTGCTATTCCTCTGC 57 131957233 131957253 AGCTTATAAATGGCACTGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 3 1 1 69 8 126975978 126975996 ATGTAAGTTCAGCTCGCAG 58 126976819 126976837 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 1 2 2 80 14 32869829 32869849 ATTCTCAGGTTCATCCAAACG 59 32856122 32869789 AGTATAAGAAGGCTCTGTCCA 58 Novel Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 3 1 1 60 18 7344105 7344123 TGGTCCAAATAAAGCAGCC 58 7348993 7349014 TGATCTCTTGAGACTAGGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 2 1 1 61 6 2660915 2660934 GTCTTCACTCCTGCAATGAG 59 2660298 2660319 CTGCAAGATTTCTCACATTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 3 1 1 61 14 58282724 58282742 GTTCATTTCAGCGACATGG 57 58289729 58289747 AAATTCAGTGGCCATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 1 1 1 60 14 71504954 71504974 ACAGGTTCATCATCTCTGGAC 60 71516457 71516475 AGCCTTAGGAAGCATACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 1 2 2 80 10 67111281 67127725 TCTCTGGAACTTACAGAATGGA 59 67111222 67111240 GAAGAGCTGGTCTTCTGGA 59 Novel Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 2 1 1 77 5 58031738 58031758 GATAGCATCAAATGGCTTCTG 58 58022461 58022479 ACATGATGCAGGACTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071851.1 ENSRNOG00000052696 ENSRNOT00000089983 3 1 1 72 1 21438018 21438036 CCATACTTCGTTCCTTGCA 58 21465637 21465656 CAATGCATAGATGAACCCGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 3 1 1 82 10 102746180 102746203 CACTACTCTTCAACTGAATACCAG 59 102746350 102746368 GAGCTCCTGGAACATCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 1 1 2 60 15 20340583 20340601 AAGGCCGTTAATTCTCCTC 57 20340921 20340939 TTGGTGTCTAAACAGGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 2 1 1 64 4 181677064 181677083 TCTCCAAGAGTAAACACCCA 58 181676537 181676555 TCCTGCCAGTCTCATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 3 1 1 70 1 64235371 64235389 CGTCACTAAGCAGACACAG 58 64236967 64236985 AACTTGTCTGCTTTGACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 1 1 1 60 15 52501669 52501688 TGAGCCATGTAAAGGGAAGG 60 52502258 52502277 CCTTCCATCATAACTGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 3 1 1 62 15 72057971 72057991 AGTCAGTTATATCAGCCAGTC 57 72078643 72078663 TATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 3 1 1 60 13 35887279 35887299 CAGGTTCTCCAAAGACATCAC 59 35886822 35886840 GTTCAGAGAAAGGGCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 2 1 1 75 1 124929412 124929431 TCCTTGTCTCATCCTCTGTC 59 124929093 124929111 GTGGGTACACATCCATCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 2 2 2 63 1 131386634 131386657 ACCCGTAGAATACTGTATAGTGAC 59 131385493 131385511 GAAGAAGCCTCCATCTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 3 1 2 80 1 131385502 131385760 CAAATGATAGGAGGGAGATGGA 59 131385443 131385465 GACTGTAGAAAGACATCTTCCCT 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 2 1 1 102 1 134951711 134951732 CACTGAAGTTTCCAATCTGGAG 59 134951459 134951477 AAACAAGTGCCTGGAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 3 1 1 61 3 93435921 93435940 CTGAGTGGTGAGGAAAGAGG 60 93436794 93436812 CTCAGGCCAAGTAGACACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 3 1 1 122 12 13450171 13450189 GCACCTGACAATTCTTGGG 59 13450391 13450409 GAAGCAGCAGAAACAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 1 1 1 60 3 120257557 120257578 ATGCATCTCATCATTGCTAGAC 59 120259534 120259555 ATAACTCAGCTCTAGGAATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 3 1 1 76 9 18820391 18820409 CTCACAGGCAGATGAATGG 58 18818492 18818510 ATGTTCTGTGGACCCACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036066.1 ENSRNOG00000052203 ENSRNOT00000087053 2 1 1 73 12 33212914 33212932 AGAAGATGACGACCTCGTG 59 33210003 33210021 GATAGCTCGTGGGTCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 3 1 1 60 X 21946874 21946893 TGCCAAATGGGTCATTTCAC 60 21946374 21946392 AACGTGCTGAGAAATCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 1 2 2 80 3 177390148 177390166 GACAAGCAGGAGAAGTGGA 59 177390209 177392115 TTTCCCTTCTTCCTCAGGTG 59 Novel Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 2 1 1 61 X 96469348 96469367 CCAGTCAGGTAGTTCATCCA 59 96466460 96466478 ATGGACCTGCTGATTTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 2 1 1 61 1 257044020 257044039 ATGTACTGTGCACCTAAAGG 58 257041631 257041649 TGTCCTGCCTCAGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 3 1 1 60 19 3742500 3742519 GCAATTTCGTTTGGTCTTCC 58 3734249 3734270 GTGTACAAAGGTCTTCTGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 2 1 1 84 7 38667460 38667478 TACAGCTCGCAACAATACC 58 38679375 38679393 GTGTTGTTGGTCTCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000087743 3 1 3 85 8 23492938 23492958 CTTCGAACACAAGACCAAGAG 59 23493509 23495988 ATTTAATGTCTTGCTCTGGAGG 59 Novel Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 3 1 1 60 19 22770753 22770771 CAGACTCACTGCTAACCCT 59 22775624 22775642 TCGTCCTCTGCTCTTAACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 1 2 2 80 10 196628 197044 CAGTGGATTCAGGAACGAG 58 196566 196585 CCAGAAGATGTCAGTCATCC 58 Novel Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 2 1 1 60 7 80270653 80270671 TACCAGTATGCTAGAGGCC 58 80283157 80283177 CTCCACTTCTCTTCTCTTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 3 1 1 61 10 10943268 10943286 CAGAAGAGGATTGAGGGCA 59 10921311 10921330 AAATCCTGCAGAGTCTTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 3 2 2 80 4 5723936 5723955 TTGAGAGGAGTTGATGACCT 58 5722471 5723893 TATAGGCCACTTGGTAGCG 59 Novel Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000077252 1 1 2 100 20 41023248 41028732 ATGTCCAGATCTAACAAGTTGG 58 41023169 41023187 GTCCTTGTGCTTCAGAGTG 59 Novel Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665 1 1 2 91 4 68426294 68426312 ACATCCTTCCAGATGGCTC 59 68426367 68451420 CTGCACTGCTTCATAGGTG 59 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 1 1 1 60 8 121730402 121730422 ACACATTCAAATCACCACACC 60 121726283 121726301 TCTGCAAACTTCTGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 2 1 1 69 Y 2027468 2027486 GATGCTGTGACTCTTCTGG 58 2038673 2038694 ACTTTACTCAATCTAGGACAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 2 1 1 60 19 52061449 52061467 CAGGCTTCAGTGAACTCCT 59 52053581 52053599 AGAGCAGTTACACCTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 3 1 1 99 2 119558768 119558786 TGAAATGCCCAGCATACAC 59 119560978 119560999 TCCTGCAGAAATATCCTTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 2 1 1 60 2 183343969 183343987 TGTAAAGCAGGGAGAGCTG 59 183343825 183343843 CCCAGCCCAGGTATAACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 2 1 1 60 14 3993503 3993523 GAGGATTTACTGATGGTTCCC 58 3983286 3983305 TGAGAAGCATCCTGTTAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 1 1 1 60 14 8895671 8895690 CTGAATATGGAGCTCACTGG 58 8894454 8894474 TCTATCCTGAAGCTCTAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd4 ENSRNOG00000029707 ENSRNOT00000042928 3 1 1 60 MT 11427 11446 TAAACAACCTCCAACCTTCC 58 11463 11487 GGAATAATGTGTAGAGCTATGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd6 ENSRNOG00000029042 ENSRNOT00000051268 3 1 1 60 MT 13620 13641 GTTGCGGCTATTTATAGTTGTG 58 13581 13599 CAAACAATGACCACCCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmbx1 ENSRNOG00000010835 ENSRNOT00000057055 3 1 1 84 5 134772749 134772767 CTCATTACCCAGACGTGGT 59 134772473 134772701 TTCTTGAACCACACCTGCA 60 NA Rattus norvegicus 81 Cma1 ENSRNOG00000020563 ENSRNOT00000067539 3 1 1 80 15 34601372 34601702 TGTATACAAGGGAGACTCTGGA 60 34601313 34601332 GCATTCGGATGTACGTAGGA 60 NA Rattus norvegicus 81 Errfi1 ENSRNOG00000058186 ENSRNOT00000085315 2 1 1 81 5 167962669 167963500 TCTAACAACCCTCGGATGTG 60 167963543 167963562 TGACTTTGGAGATGGACCAC 60 NA Rattus norvegicus 81 Errfi1 ENSRNOG00000058186 ENSRNOT00000085315 3 1 1 81 5 167962670 167963500 CTAACAACCCTCGGATGTG 58 167963545 167963563 TTGACTTTGGAGATGGACC 57 NA Rattus norvegicus 81 Gpr150 ENSRNOG00000026944 ENSRNOT00000029265 2 1 1 60 2 2814445 2814465 TGTCTAACCTATCCCTACCCA 59 2814405 2814423 CCCTGCTTAGAAGTGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680353 ENSRNOG00000033484 ENSRNOT00000048963 3 1 1 60 X 74824534 74824553 GACTTTCTACTCACAGCCCA 60 74824573 74824594 CCGTGTTCTTCTTGATCTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365839 ENSRNOG00000016146 ENSRNOT00000021604 1 1 1 80 2 186631004 186631024 ATAGGAATTCAGAACCTTGGC 58 186631063 186631202 AAGCCTATGATAGTTGTCACTG 58 NA Rattus norvegicus 81 Ufm1 ENSRNOG00000038176 ENSRNOT00000058116 1 1 1 101 2 143101629 143104203 ACCGTACAAAGTCCTCAGC 60 143100738 143100757 ATAATCGCACTTGTAGCAGC 59 NA Rattus norvegicus 81 Fsip2 ENSRNOG00000051199 ENSRNOT00000089165 3 1 1 80 3 70348757 70348777 ACCAAGAAGACCTCATTTCTG 58 70350594 70353227 CCTGACAACTTTCTTCTAATGC 58 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330,ENSRNOT00000091593 1 2 2 81 8 108788462 108790615 AGTCTTCGCCAAATGATTTCTC 59 108788402 108788421 ACAGTCTCTTTCAGCTGGAC 60 NA Rattus norvegicus 81 LOC684822 ENSRNOG00000033199 ENSRNOT00000040365 1 1 1 60 8 3272029 3272048 CTGCGTATTGAACCCTTCTC 59 3271988 3272006 AATCCTGTGGCTTCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2a ENSRNOG00000000852 ENSRNOT00000001133 2 1 1 80 20 5141636 5141657 CTATCGACTCCCAGTTACATCC 60 5141463 5141595 GAGGCTGTGACCTGTACTG 60 NA Rattus norvegicus 81 Psmb5 ENSRNOG00000013386 ENSRNOT00000018005 1 1 1 80 15 33262715 33263437 CTGGCCTTCAAGTTTCAGC 60 33262653 33262672 TGTCTGGGAAGCAATGTAGG 60 NA Rattus norvegicus 81 Tbcel ENSRNOG00000032364 ENSRNOT00000059951 2 1 1 80 8 46722116 46723473 GGAGTTGCCAGATTTGGAG 59 46722054 46722074 GAATGACAGCAAACAGAAGGA 59 NA Rattus norvegicus 81 Gramd2 ENSRNOG00000025979 ENSRNOT00000036798 2 1 1 80 8 64533374 64533948 GGAGATGGTTGTCAAAGTGTG 60 64533988 64534008 CAGTTGGGCGAAATATACAGC 60 NA Rattus norvegicus 81 Gsta2 ENSRNOG00000029861 ENSRNOT00000032185 2 1 1 80 8 85644680 85644699 CATTCTCAACTACATCGCCA 58 85642787 85644640 TCTGAATACATGTCAATCAGGG 58 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943,ENSRNOT00000064712 2 2 2 80 5 138361051 138361071 GTTCTGCACTGGAGAATTCAG 59 138359704 138360753 AAATCCTTTATGACCCTGTGGA 60 NA Rattus norvegicus 81 Bak1 ENSRNOG00000000485 ENSRNOT00000000576 1 1 1 80 20 5612313 5612333 CCAGAATTTACTGGAACAGCT 58 5611069 5612271 TTAAATAGGCTGGAGGCGA 59 NA Rattus norvegicus 81 Mir34b ENSRNOG00000035561 ENSRNOT00000053684 1 1 1 60 8 55492597 55492618 GTTTGTAGGCAGTGTAATTAGC 58 55492558 55492578 GCAGTGGAGTTAGTGATTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a8 ENSRNOG00000000512 ENSRNOT00000059264 3 1 1 80 20 5905521 5905539 AGAGTGAACAAGTGCATCC 58 5902567 5905477 GAAGCCAAGAATCAGGAGC 59 NA Rattus norvegicus 81 Eif3i-ps1 ENSRNOG00000055760 ENSRNOT00000081452 1 1 1 143 2 145937427 145937451 GAACATCATACTTTCCGAACAG 58 145937555 145937573 GAACCTGTCCTCAAACTGG 58 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 3 1 5 82 X 26442578 26443954 AAGCTATGAGGTGCTTACCC 60 26448478 26448498 CCTGGTACCACTTCATAGGAG 59 NA Rattus norvegicus 81 Adpgk ENSRNOG00000026178 ENSRNOT00000013022 3 1 1 81 8 64095664 64095685 GAACGCTTCTTCAGTGATAGAG 59 64095727 64102290 CTACATAGTGCTGGGCTCC 60 NA Rattus norvegicus 81 Lao1 ENSRNOG00000007232 ENSRNOT00000009520 2 1 1 80 5 138013550 138013568 ATAGTGGTAGTGGGAGCTG 58 138013609 138013976 CAAGATTGTTACCTCATGACCA 59 NA Rattus norvegicus 81 Brpf3 ENSRNOG00000028641 ENSRNOT00000042143 3 1 1 81 20 6083223 6083925 TAACAAGAGGACCTGGCAG 59 6083967 6083988 CATCTTGAGCTTGTCTACAGTG 59 NA Rattus norvegicus 81 Olr500 ENSRNOG00000056110 ENSRNOT00000084704 1 1 1 60 3 73735749 73735768 CACTTTATCCTTCTGTGGCT 58 73735708 73735726 CAAAGGGAGAGCATCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrg3 ENSRNOG00000047013 ENSRNOT00000071232 1 1 1 80 1 69286842 69287503 CATCATGGCTGTGTTCCTG 59 69286780 69286799 TCCTCCAGAAACTCATTTGC 58 NA InUTR Rattus norvegicus 81 Mir1298 ENSRNOG00000041538 ENSRNOT00000063291 2 1 1 60 X 118190265 118190285 CCAGATGTATCCAAGTACCCT 59 118190307 118190325 AGTTCAATCAGTTGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mageh1 ENSRNOG00000003178 ENSRNOT00000004238 3 1 1 60 X 19244438 19244456 TGATGATGCAGAGGTTGAG 57 19244480 19244498 CTATGGAGCAGAAGAACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 3 2 2 87 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356885 6357490 GAGTGATAGAAATCTGTTAGGCTG 59 NA Rattus norvegicus 81 Mir878 ENSRNOG00000041199 ENSRNOT00000062952 1 1 1 60 X 151283506 151283527 TATCTAGTTGGCTGTCAGTCAC 60 151283467 151283486 CTCCTCTACCCAGTATGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mx1 ENSRNOG00000001959 ENSRNOT00000039876 2 1 1 80 11 37905837 37905856 GACCAGAGTTCAGGGAAGAG 60 37904008 37905795 CCTGGTAACAATACCACTGC 59 NA Rattus norvegicus 81 Rab32 ENSRNOG00000014258 ENSRNOT00000019121 2 1 1 81 1 4644508 4644527 GAGTCCTTCCCAGATGAACC 60 4640055 4644468 GTTTATGTTATCCTTGGCAGAGG 60 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 3 2 2 83 5 14611278 14611998 GGACATAGTTTCAGGCACC 58 14612045 14612063 AGTTGGATCAACTCGACCT 58 NA Rattus norvegicus 81 Olr232 ENSRNOG00000049748 ENSRNOT00000047839 3 1 1 60 1 171196511 171196532 TTATTTCTGGGCATCTATCTGG 58 171196472 171196494 GAACAAGGAACATGAGAAGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041987.1 ENSRNOG00000049579 ENSRNOT00000071783 3 1 1 227 X 144999344 144999362 AATCGTGTGGAAACAACCG 59 144999713 144999736 AGTATTAGATTCTTCTGGGACCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC686143 ENSRNOG00000023511 ENSRNOT00000032698 2 1 1 80 2 193184663 193184713 AAACCTACGTGAAATGTCCAG 59 193184496 193184515 GGCATTTCACGTAGGTTGTC 60 NA Rattus norvegicus 81 Olr1329 ENSRNOG00000060221 ENSRNOT00000078003 2 1 1 60 8 43781974 43781992 AGACAAGCCAGAACTTCAG 57 43782014 43782034 GGAGACCACATAGATCAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 2 2 2 80 1 83513212 83513374 GGGATATGGTGTGATCTTTGC 59 83513414 83513434 CCGAATTCTTTCATGGTGACC 60 NA Rattus norvegicus 81 Lpcat1 ENSRNOG00000017930 ENSRNOT00000024111 2 1 1 80 1 32384513 32384532 GAATATGTGGTCGCCTTGTC 59 32381997 32384473 CCCATACATCTTAAATGCCAGC 60 NA Rattus norvegicus 81 Cyp8b1 ENSRNOG00000019481 ENSRNOT00000026355 1 1 1 60 8 130549083 130549101 AAGTCAGGCAAGAAGATCC 57 130549041 130549059 GACATATGGAGACACCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688932 ENSRNOG00000030228 ENSRNOT00000041740 3 1 1 84 X 34296987 34297012 TTCGATGATGCTGTTCAATCTG 60 34296924 34296942 ATTCGACTTGGACCTTGGG 60 NA Rattus norvegicus 81 Impg2 ENSRNOG00000001622 ENSRNOT00000044900 2 1 1 80 11 46631554 46631573 CAGCAGTGCTTCAGATTGAC 60 46630337 46631516 CTGTGTTGTCGTCTTCTAATATGG 60 NA Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 3 1 1 65 2 39316725 39317552 AGATCACTACTCTAACATAAGCCC 60 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1260 ENSRNOG00000046762 ENSRNOT00000075251 2 1 1 60 3 158851439 158851460 GCTTTGGTAAATAGCTCTATGG 57 158851480 158851499 CAGTCTGGTCTGTTAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc3 ENSRNOG00000007520 ENSRNOT00000009859 3 1 1 60 3 147879126 147879144 GCTTTAAGTGTGGTTCCCG 59 147879084 147879102 CTGAAACACCTGTCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365238 ENSRNOG00000015168 ENSRNOT00000020345 1 1 1 115 1 94781069 94782430 GACTACAGACTCAGGAATTGTG 59 94780975 94780993 TATGCCTCCATAGTGCTCG 59 NA InUTR Rattus norvegicus 81 Ercc3 ENSRNOG00000013180 ENSRNOT00000018422 2 1 1 80 18 25043380 25044004 AGTTAAGCAGGAGATGATCGAG 60 25044045 25044063 CGGAAGTCATACTCTGCCA 59 NA Rattus norvegicus 81 Ccp110 ENSRNOG00000027405 ENSRNOT00000037870 2 1 1 80 1 188427199 188429823 CTAGCCCTAAAGAAGGCCA 59 188429865 188429885 GCTGTTCCTCTAGTCTCTTCC 60 NA Rattus norvegicus 81 Ehd2 ENSRNOG00000011346 ENSRNOT00000017353 3 1 1 171 1 77861218 77862729 CTTTCCTCAACAGGTTTATGTG 58 77855667 77855685 AGCAAGATGATGAGGTCCA 58 NA Rattus norvegicus 81 Olr464 ENSRNOG00000051431 ENSRNOT00000083865 1 1 1 60 3 73249946 73249965 TTCCTCATCTACAGTCACCC 59 73249987 73250006 AATGCTCTTATCTTCAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770,ENSRNOT00000085527 2 2 2 80 5 136698976 136699102 GGTACTCAGTTCTGCCTCC 60 136699144 136699164 CTTCTTCTGCAGAATCCACTC 59 NA Rattus norvegicus 81 Dbt ENSRNOG00000015029 ENSRNOT00000020267 1 1 1 80 2 219589231 219589249 ATTGGTGGAACCTATGCCA 59 219589293 219590807 GGGAAGAGCCTTAATGGCT 60 NA Rattus norvegicus 81 Rn60_X_0232.1 ENSRNOG00000031906 ENSRNOT00000042767 1 1 1 81 X 22775932 22775953 CTGAAAGTTTGGATGAAACAGG 58 22776027 22776045 AAGCATCTCCGTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rdh13 ENSRNOG00000027919 ENSRNOT00000031462 3 1 1 81 1 72957084 72957102 CTGTTATCGTGACAGGAGC 58 72957147 72958578 AGAATGATGTTGCCTCCTC 57 NA Rattus norvegicus 81 Ppef1 ENSRNOG00000027331 ENSRNOT00000058947 2 1 1 80 X 35872065 35892250 GGAAGATTCAGCATTAGTAAGTCG 60 35892286 35892307 ATCAATCCCACGTATTCCTCTC 60 NA Rattus norvegicus 81 Tyw5 ENSRNOG00000010100 ENSRNOT00000013502 3 1 1 80 9 64083328 64083886 CCCGAGGAAGGATATTGCA 59 64083266 64083287 TCTCTGAAGAACATTGGAAAGG 58 NA Rattus norvegicus 81 Paip2b ENSRNOG00000014092 ENSRNOT00000019399 3 1 1 80 4 115488925 115492860 GGATTTCAACAGACAGGTGG 59 115488864 115488883 TCTTCATCCAGCATCTCCTG 59 NA Rattus norvegicus 81 Macc1 ENSRNOG00000037436 ENSRNOT00000056654 3 1 1 80 6 147380650 147380669 CACTAAGCATCAGATGCAGG 59 147380711 147392092 GGTTTCCACATTGTCTCTGC 60 NA Rattus norvegicus 81 Fkbp2 ENSRNOG00000021153 ENSRNOT00000028725 1 1 1 80 1 222233562 222233580 AGAAACGTGTGGATCACTG 58 222233158 222233519 CATCTTCTAGCTTTCCCGTG 59 NA Rattus norvegicus 81 Fkbp2 ENSRNOG00000021153 ENSRNOT00000028725 3 1 1 80 1 222233569 222233587 GGAGTGAAGAAACGTGTGG 59 222233165 222233525 TAGCTTTCCCGTGTAATGC 58 NA Rattus norvegicus 81 AABR07014265.1 ENSRNOG00000042380 ENSRNOT00000065071 2 1 1 85 14 6299137 6299158 CATGTGACCAATGTTGTAAAGC 59 6299203 6299306 TTCATAGGGCTTTCCTCCAG 59 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220,ENSRNOT00000002719 3 2 2 80 11 51040974 51049309 CCCTTCATCTTCCGATGGT 59 51040912 51040932 TGATGAATTTCTGGTGCAGTC 59 NA Rattus norvegicus 81 Olr306 ENSRNOG00000047643 ENSRNOT00000044878 1 1 1 60 1 213195034 213195053 GACATTATCTGCACCTCCTC 58 213195075 213195094 TTTCCTCAGACAGTAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554121 ENSRNOG00000048837 ENSRNOT00000071358 2 1 1 80 9 105253134 105262329 TCGTGCTCTTTGGTATCTG 57 105253072 105253090 ATCAAAGCCAAGGACTCTG 57 NA Rattus norvegicus 81 Olr106 ENSRNOG00000015893 ENSRNOT00000021273 3 1 1 60 1 168610800 168610820 TAATTCCTCCTGTGATGAACC 58 168610760 168610778 TTGTCACGAATCTGCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000061814,ENSRNOT00000086167 2 3 3 80 13 25983852 25983871 ATTGGTCTGACCTTTCAGTC 58 25983914 25990222 ACTCCTTTGGAAGCTTCAG 57 NA Rattus norvegicus 81 Olr338 ENSRNOG00000048005 ENSRNOT00000016484 3 1 1 60 1 229108320 229108339 CTACTTGTGCATGTCTGACC 59 229108362 229108380 TGGATGGAGGAATTCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep2 ENSRNOG00000020904 ENSRNOT00000028379 3 1 1 82 1 221273786 221281163 CTCCTCAAGCTTCTCAACTC 58 221273723 221273742 AGAAAGGTGAGATCTCAGCA 59 NA InUTR Rattus norvegicus 81 AABR07044495.1 ENSRNOG00000048871 ENSRNOT00000074908 2 1 1 85 20 8183233 8183291 ATGTTTGACAGATGCGTGTG 60 8183167 8183186 TTTGCCTTCACTTTCCTGTC 59 NA Rattus norvegicus 81 Nr2e3 ENSRNOG00000050690 ENSRNOT00000073122 3 1 1 80 8 64797618 64797878 CTCTTCAAACCTGAAACACG 57 64797557 64797575 CTTAAGCATCACCTGGGAC 58 NA Rattus norvegicus 81 Olr180 ENSRNOG00000033813 ENSRNOT00000047978 1 1 1 60 1 169855848 169855866 CCACCAGCCCTTAATCCTC 60 169855806 169855824 TTACTCGTGCCCGAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 1 2 3 80 5 22747114 22749238 GGCTAAAGTTAAAGAACCCAC 57 22747054 22747072 CTTCCCTCTTCAGTCTTGC 58 NA Rattus norvegicus 81 Rn60_7_0716.1 ENSRNOG00000033952 ENSRNOT00000041958 1 1 1 60 7 71399096 71399116 GCAAGAAGTGAAAGTGAAGAG 58 71399056 71399076 TTGAAGAAACTACTGCACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 3 2 2 81 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316595 22316614 TTCGATCTTCAAACTGTGCC 59 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 1 2 2 80 1 101455556 101456354 CTGCAGAGGATGATTGCTG 59 101455494 101455512 GTCTGCAAACATGTCAGCT 59 NA Rattus norvegicus 81 Snrpd2 ENSRNOG00000015844 ENSRNOT00000021221 1 1 1 87 1 80057206 80058513 CCTTCACCATGAGTCTCCT 58 80058563 80058582 CCTGTGTTGAATTCCTCCTC 58 NA InUTR Rattus norvegicus 81 Snrpd2 ENSRNOG00000015844 ENSRNOT00000021221 2 1 1 88 1 80057205 80058512 ACCTTCACCATGAGTCTCC 59 80058563 80058582 CCTGTGTTGAATTCCTCCTC 58 NA InUTR Rattus norvegicus 81 Tle3 ENSRNOG00000013013 ENSRNOT00000018467 1 1 1 80 8 66326061 66326079 CTTGGCAGTGAAGGATGAG 58 66327539 66331417 GGTGACACAGAATTGTTCGT 59 NA Rattus norvegicus 81 Cldn3 ENSRNOG00000046007 ENSRNOT00000075280 1 1 1 65 12 21832100 21832118 TCTATCCTACTGGCAGCCT 60 21832053 21832071 TACGCAGTTGGTACACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 1 2 2 80 1 137969757 137969776 TCCGATTGCTTAAGGTTCCA 60 137969817 137971989 GTCATACTCAAACTCACGCAC 60 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 2 2 2 83 9 62311727 62311745 CAAAGGAAGGCTTGAAGGG 59 62311790 62347595 CTCCTTGTCCCTTCAATACAG 58 NA Rattus norvegicus 81 Prl7a4 ENSRNOG00000029126 ENSRNOT00000040600 3 1 1 80 17 39096715 39096736 GGACTGTTAAATAATGCCACCA 59 39096774 39097546 ATTGACTGTATATTTCCTGCGC 59 NA Rattus norvegicus 81 Gpatch11 ENSRNOG00000025317 ENSRNOT00000034919 2 1 1 82 6 1417015 1418609 AGTGAAGATCTGAGTGTGCT 59 1418653 1418672 CCACACCAGATGCAATACAG 59 NA Rattus norvegicus 81 Defb42 ENSRNOG00000038762 ENSRNOT00000059215 2 1 1 68 15 46166313 46166332 AGACTGTATCTGCTCCTCTC 58 46159703 46166283 TAAACCACTTCTAACTCGGG 57 NA DesignRelaxed Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000068085 2 1 2 148 18 29191790 29191809 TTATCCACAACAGCCAATGG 59 29191917 29221868 AAATGTACACTGTGGTCTTAGG 58 NA Rattus norvegicus 81 Tapbp ENSRNOG00000029500 ENSRNOT00000044975 2 1 1 124 20 5471197 5475187 CATGGCAACAGTGGTACTG 59 5471091 5471109 CAGAGGGAGCATCTTCCAG 60 NA Rattus norvegicus 81 Sema7a ENSRNOG00000007687 ENSRNOT00000010620 2 1 1 80 8 62741389 62743910 ACTTTACCTAACCACAGACAG 57 62743951 62743970 ATGTTGAAGACAAAGCTGTG 57 NA Rattus norvegicus 81 Msx3 ENSRNOG00000046776 ENSRNOT00000074875 1 1 1 195 1 212516986 212517004 CATAGAGCAGGGACCACTC 59 212516190 212516208 TTTGTGTTTGCGAAGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000005646 3 1 2 80 14 84164898 84169695 TCTGTTCAACAGAGTGCTC 57 84164836 84164854 GAAACTGGGCAAAGAAGTG 57 NA Rattus norvegicus 81 Rn60_X_0594.7 ENSRNOG00000051250 ENSRNOT00000075907 1 1 1 60 X 58579899 58579918 TAATGAATTGGGAACAGCCT 57 58579858 58579877 GTCAATGATAGCCAATGTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910567 ENSRNOG00000050494 ENSRNOT00000072617 3 1 1 80 2 150354652 150354670 AGATCCTACCCGAATTGCT 58 150354714 150364441 TCAATCTGCACCTGTTGTG 58 NA Rattus norvegicus 81 RGD1564878 ENSRNOG00000049074 ENSRNOT00000059672 1 1 1 80 15 35131349 35132408 AGCTGGAGCAGTTAAAGAGG 60 35131288 35131309 GACTGAATAAACGCCATGTAGG 60 NA Rattus norvegicus 81 Lce1d ENSRNOG00000046788 ENSRNOT00000012464 1 1 1 70 2 193042243 193042261 GACTCCAAAGTGTCCTCCA 59 193042191 193042209 TACAGCAGGAAGACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 2 1 3 161 4 78378381 78382295 TGCACTCAGAAGAGAATGGA 59 78383698 78383716 AGTTCCTCAAAGCCATGGT 59 NA InUTR Rattus norvegicus 81 Mir871 ENSRNOG00000041334 ENSRNOT00000063087 1 1 1 60 X 151287839 151287857 GCCCTATTCAGATTGGTGC 59 151287797 151287816 ATTATCCAGTATGGTGCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 2 1 1 68 1 99864134 99864153 GACGCCTGAACAAGATAGAC 59 99864184 99864687 AGAATTAGCAGCTCTGCAC 58 NA DesignNoJunction Rattus norvegicus 81 Frg1l1 ENSRNOG00000000964 ENSRNOT00000001279 3 1 1 60 12 34004531 34004550 TTGACATTGTGGGAATCTGG 58 34004490 34004509 GCAATGGTTCCTGAAATCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 2 2 2 80 17 39160773 39161327 TGCCAAGAAGGTTAAACATGG 59 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Rn60_X_0609.1 ENSRNOG00000003115 ENSRNOT00000004152 2 1 1 60 X 60292189 60292209 TGAGTTCAGGTGGTTATGGAG 60 60292149 60292167 GTTGATGACGATCCCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufsp1 ENSRNOG00000051006 ENSRNOT00000073356 2 1 1 60 12 22471516 22471535 TGTCTTGATACTGGACCCAC 59 22471475 22471493 AGCTTGCAATTCACAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0586.2 ENSRNOG00000051273 ENSRNOT00000075880 3 1 1 60 X 57718415 57718434 AACATGAACACTCACATGCT 58 57718455 57718475 CAAGGATATCTTCACCATGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rell2 ENSRNOG00000019575 ENSRNOT00000026526 2 1 1 81 18 31096526 31096968 GGTACAGCTCTCCAGTGTG 60 31097013 31097031 AGAGCCAAGGTGTACTGTG 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386,ENSRNOT00000084777,ENSRNOT00000087120 2 3 3 88 4 7228425 7228443 GTACAACTACTTCCTGCGC 59 7227832 7228373 CAGCACTGATAGCATCCTG 58 NA Rattus norvegicus 81 Rn60_X_0626.1 ENSRNOG00000049958 ENSRNOT00000072090 1 1 1 60 X 61919608 61919626 AAAGACCGCTATGACAGAC 57 61919649 61919668 CCCAAGAGTAATCATCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000090579,ENSRNOT00000067823 2 3 3 60 5 25578598 25578616 GGGTACAAGGTGACTCTGG 59 25578556 25578576 ACATCTTTGCTCTCCTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 1 2 2 105 1 243518368 243542072 AGTGGCAGATGAAGACCTC 59 243542141 243542159 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000074587,ENSRNOT00000036781,ENSRNOT00000071919 2 3 3 80 15 39718189 39718207 TGCAGCTCAGTAAGGAGAG 59 39715730 39718148 AGCAACTGTGATTAAGGAAACG 60 NA Rattus norvegicus 81 Il1r2 ENSRNOG00000014378 ENSRNOT00000019415 2 1 1 80 9 46876424 46878136 GCTACACCACCAGTACTCAG 60 46878178 46878197 AGATCCTCCTTTGTGACTGG 59 NA Rattus norvegicus 81 Mir1843 ENSRNOG00000045015 ENSRNOT00000070282 2 1 1 60 6 103567636 103567657 GTCCTACATGAATATGGAGGTC 58 103567597 103567615 GAACGATCAGACTTAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cstb ENSRNOG00000001201 ENSRNOT00000001593 3 1 1 81 20 10966662 10967166 TTCATCAAGGTTGATGTCGG 58 10966600 10966620 TCAAAGGCTTGTTCTCATGAG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 1 2 2 80 X 39825770 39825788 GTTTCACAGTCTGCTCACC 59 39825827 39830745 GGATTTAATATACATACCCAGCCC 59 NA Rattus norvegicus 81 Prl2a1 ENSRNOG00000016463 ENSRNOT00000022093 1 1 1 80 17 38901748 38902901 CAGACACATCCCATAACCC 58 38901686 38901705 GTTCACTAGGTCGTTCAGAG 58 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578 1 2 5 80 7 115780733 115780902 CCAGATGATGACCCGAGAG 59 115780946 115780964 AGTGTCTGGATGACCTCTG 58 NA Rattus norvegicus 81 Prdm15 ENSRNOG00000001620 ENSRNOT00000046318 3 1 1 80 11 38339081 38339102 AATTTGGTCCATTTGAGTCCAG 59 38337209 38339045 CATCCTTCTGAAATACCTTCAGAG 59 NA Rattus norvegicus 81 LOC100362774 ENSRNOG00000042486 ENSRNOT00000050818 2 1 1 128 3 146035893 146035935 TTACTTAGGGTACAGTGCAC 57 146035784 146035803 TCATTGTGGGCTCTATTGTC 58 NA Rattus norvegicus 81 Zp1 ENSRNOG00000020907 ENSRNOT00000028396 1 1 1 80 1 226966844 226966960 TGATTCTGAGATAGCAAGGCA 59 226966784 226966802 GGAGAGCTCACAATGTCCA 59 NA Rattus norvegicus 81 Olr1323 ENSRNOG00000053357 ENSRNOT00000079430 2 1 1 60 8 43676126 43676149 GTATTATTTCCTCAGCAGTCTGTC 59 43676165 43676186 GGGAATAATGACAGTCGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col9a2 ENSRNOG00000011502 ENSRNOT00000048506 2 1 1 92 5 139966008 139966026 AGGTAAAGTTGGTCCTCCG 59 139966165 139967341 CCCATTAAACCATCAATGCCA 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000086975,ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 1 4 5 80 17 39416233 39416256 TCTAAAGCTAAGGATCTGGAAGAG 60 39416295 39417255 TGTAGGGAAGACCTTGGTG 59 NA Rattus norvegicus 81 Gja8 ENSRNOG00000046703 ENSRNOT00000071622 3 1 1 60 2 199051894 199051913 CACATCATCTTCAAGACCCT 57 199051853 199051872 CATACAGGAAGTAATGGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rspo4 ENSRNOG00000009662 ENSRNOT00000012951 3 1 1 84 3 147386818 147386836 GAAGAGATGGCAAGTTGCC 59 147386883 147389621 GCCTGGGATTTCTTTCTCCT 60 NA Rattus norvegicus 81 Adhfe1 ENSRNOG00000007069 ENSRNOT00000009462 1 1 1 80 5 9418778 9419796 GATGTCCTTTGCCATGCTC 59 9418716 9418734 TTGGATGGGATTGGAAGGG 59 NA Rattus norvegicus 81 Ramp3 ENSRNOG00000053766 ENSRNOT00000086468 3 1 1 91 14 86922300 86937009 CTGCTTTGTGGTGAGTGTG 59 86937064 86937082 ATTTCGGCAAAGGCTTTCC 59 NA Rattus norvegicus 81 LOC100361637 ENSRNOG00000048099 ENSRNOT00000066802 1 1 1 94 15 29903541 29903711 AATACTCAGAAGGAGCAATGG 58 29903467 29903485 GATAGGTGCAGTTCAGCAC 59 NA Rattus norvegicus 81 LOC100911438 ENSRNOG00000048285 ENSRNOT00000071709 3 1 1 60 8 42002394 42002415 CCTCACAGGCTTAATGTTTAGG 59 42002433 42002454 CATGTAGTGATTGATGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kifc1 ENSRNOG00000000479 ENSRNOT00000065349 3 1 1 87 20 5520110 5520128 GATCGTCTTCGGGAAACAC 59 5520179 5520295 CGTGGGACTCCTTATTGCT 60 NA Rattus norvegicus 81 Fcnb ENSRNOG00000009342 ENSRNOT00000012494 2 1 1 80 3 6621031 6621201 AGTCATGTGCTACAGGACC 59 6620969 6620989 GGTAGATGGTATACCAGCCAG 60 NA Rattus norvegicus 81 LOC498122 ENSRNOG00000048861 ENSRNOT00000071453 1 1 1 154 11 86303219 86303237 TACTATGTCCATGGCGAGC 59 86300358 86300376 ATGAGGGTGTGCTTCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017825.2 ENSRNOG00000047570 ENSRNOT00000071012 3 1 1 61 15 31436329 31436445 GGGATAAACTTCCTCCTGAGAG 60 31436465 31436485 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Tmem104 ENSRNOG00000025669 ENSRNOT00000055037 3 1 1 80 10 103749145 103749555 TCCACAAGGAAGAGGATGAC 59 103749598 103749616 CTGCCCTCTCGTAGTTGTC 60 NA Rattus norvegicus 81 Vpreb2 ENSRNOG00000001839 ENSRNOT00000002517 1 1 1 60 11 87158405 87158423 TCTTCCTTCCTTGGAACCT 58 87158363 87158382 CAATGTTATGGTTGCTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr241 ENSRNOG00000049483 ENSRNOT00000041658 1 1 1 60 1 172130310 172130330 ACTCTACTGAACAGAACAAGG 57 172130351 172130370 TTCAGCATAGGAATGACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 1 2 2 80 18 33413696 33413717 GACAAGTTACAGCATCGATGAG 60 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Irf1 ENSRNOG00000008144 ENSRNOT00000010968 1 1 1 80 10 39110784 39112150 CTGAGCTGGATCAATAAAGAAGAG 59 39112189 39112207 CTTGTTGATGTCCCAACCG 59 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 3 2 2 120 2 188657364 188657382 TTCGAGTTCTTGCCTGGAG 60 188656573 188656933 GAGCTGACTCGGATCTGTC 60 NA Rattus norvegicus 81 Ube2b ENSRNOG00000005064 ENSRNOT00000016742 1 1 1 82 10 37443014 37443033 CTTAGACATCCTGCAGAACC 58 37441596 37442969 GCTCATCCAACAGAGACTG 58 NA Rattus norvegicus 81 Rhoq ENSRNOG00000015415 ENSRNOT00000020822 3 1 1 80 6 10563152 10563170 AAAGGAGGAATGGGTACCA 58 10563213 10563508 CGGAGATCAATCTGAGTTCC 58 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 1 2 2 80 11 60074814 60084682 TCTATGGGAAGGGAAGGAC 58 60084725 60084744 CCATCATCCTTGGTAACTGC 59 NA Rattus norvegicus 81 Cd276 ENSRNOG00000033608 ENSRNOT00000042681 3 1 1 125 8 63332704 63335215 CCTTACAGGAGCTGTGGAG 60 63332597 63332616 ATGAGGTTGAGCTGTCTCAG 60 NA Rattus norvegicus 81 Palm2 ENSRNOG00000025558 ENSRNOT00000030913 3 1 1 80 5 74766740 74767757 GGACTTGCAGAAGAGTTTCTC 59 74786180 74786201 CCTGTTTGTTTGTCTTTCTCCA 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010,ENSRNOT00000061746 3 2 2 81 6 11026022 11049071 AACTATTTCACTCCTCACGAG 58 11025961 11025981 AACACGAAGTGATAGATCCTG 58 NA Rattus norvegicus 81 Pdlim4 ENSRNOG00000050794 ENSRNOT00000074616 2 1 1 82 10 39396265 39399923 CTCAGTAAGCAGGCCTGAG 60 39396201 39396219 CAGGGTCAATGTGGATCCT 59 NA Rattus norvegicus 81 Urad ENSRNOG00000050360 ENSRNOT00000074791 3 1 1 187 12 9447046 9447064 GTCCTTTCTCTGGCTTGGA 59 9455442 9455460 GGTCTTTAGGCTGGTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Prune2 ENSRNOG00000015088 ENSRNOT00000054794 3 1 1 80 1 236692652 236692673 TCTAGTTTATCCGAGCTCAGTG 60 236688877 236692615 CTCTTCATCGTACTTGATGATGC 60 NA Rattus norvegicus 81 Ccl1 ENSRNOG00000021851 ENSRNOT00000031360 2 1 1 80 10 69535231 69536630 CTTACTACCCAGCTGTAATATTCAG 59 69535175 69535193 AATCTTGAACCCACGTGGT 60 NA Rattus norvegicus 81 Ptms ENSRNOG00000060098 ENSRNOT00000081802 2 1 1 81 4 157436350 157436368 GAGAATGGAGCTGAGGAGG 59 157436137 157436307 CCTCCTCATCTTCTTCGTCTC 60 NA Rattus norvegicus 81 Rnf31 ENSRNOG00000019438 ENSRNOT00000026333 3 1 1 80 15 34280034 34280303 ACGCCAAGAATAAATGTCCAG 59 34280345 34280363 AGAAGAGGCAATCTCGAGG 59 NA Rattus norvegicus 81 Olr1551 ENSRNOG00000046134 ENSRNOT00000041679 1 1 1 60 11 43521852 43521873 ACAGATGAACAAGGTATGATGG 58 43521891 43521912 GGTTTAGCACAGGGATTATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc5 ENSRNOG00000010038 ENSRNOT00000013997 2 1 1 80 10 94446576 94449483 TGAAGAACTCCAGTTGATTGTG 59 94449522 94449542 TTTGCATTGAGCTCATTCCTC 59 NA Rattus norvegicus 81 Zfand5 ENSRNOG00000018107 ENSRNOT00000024583 2 1 1 85 1 238850396 238850981 GCCTTACAGGGTTTGACTG 59 238851027 238851048 GTAATCATAAGGACAGTTGTGC 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 2 2 2 81 1 174376870 174376888 AAATGTATCTGCCCTCCCT 58 174372305 174376828 GAAGGCAATCACAATCTTTCTG 58 NA Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 3 2 2 80 17 39547509 39548794 AATTCTCAGCATGATTGGAGAG 59 39548835 39548853 TCATTGCTTGACTGCAAGG 59 NA Rattus norvegicus 81 Ubxn4 ENSRNOG00000003625 ENSRNOT00000004878 3 1 1 80 13 44967803 44967822 GGAAGTAATAGCAGGGAGTG 58 44967864 44971129 CCTTTCAATGAGTGCATCTG 57 NA Rattus norvegicus 81 Prdx4 ENSRNOG00000003763 ENSRNOT00000005014 1 1 1 80 X 43504933 43506703 TCTGGACATACTCTTAGAGGG 58 43506744 43506763 CACAGGAAGGTCATTCAGAG 58 NA Rattus norvegicus 81 Agtr1a ENSRNOG00000018346 ENSRNOT00000038532 1 1 1 80 17 35909069 35948525 GATCACCAGGTCAAGTGGA 59 35909007 35909025 GCAGAAGAGTTAAGGGCCA 60 NA InUTR Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 1 2 2 80 9 119858842 119858863 TGCTATGAGAAGTTCATGACTG 58 119857205 119858802 ATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 3 2 2 80 9 119858839 119858861 CTATGAGAAGTTCATGACTGGAG 59 119857203 119858802 TTATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 RGD1307443 ENSRNOG00000018141 ENSRNOT00000024536 2 1 1 80 17 42207625 42207646 GTACTAACCTTACCCAATGGAG 58 42206043 42207585 ATAGGTGTAAGCTGTGTCTG 57 NA Rattus norvegicus 81 Olr208 ENSRNOG00000045631 ENSRNOT00000051962 3 1 1 60 1 170743542 170743561 CCCATGTATCTTCTGCTCTG 58 170743501 170743521 TGATAACTGATGTGAGGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk2 ENSRNOG00000009389 ENSRNOT00000012963 3 1 1 81 5 29843538 29843557 CTAGAAACGCTGGTTCTCCT 60 29841264 29843494 TCTTGAGGTCCTCCATGGA 60 NA Rattus norvegicus 81 Sipa1l3 ENSRNOG00000020703 ENSRNOT00000042207 2 1 1 80 1 87320490 87320509 GGACCACATCTTTCTACAGG 58 87314587 87320447 TTGGTCATCACCTTTAGCC 57 NA Rattus norvegicus 81 Angptl4 ENSRNOG00000007545 ENSRNOT00000010031 3 1 1 80 7 18629997 18630917 TGACTTCAGATGGAGGCTG 59 18629935 18629953 TGTAGGCTTCCCAAGACTG 59 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650,ENSRNOT00000027091 3 2 2 92 1 220244654 220244672 TTTGAGCTCAAGATTGGGC 59 220244728 220244833 CACCTCTTTCCCTGTTTGC 59 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672,ENSRNOT00000079864 3 2 2 80 6 1681842 1681861 CTCAGAAGATGGCATCAAGC 59 1681902 1683730 GTAAGACCAACAGATCCATGC 59 NA Rattus norvegicus 81 LOC681338 ENSRNOG00000032947 ENSRNOT00000047517 2 1 1 60 9 60923370 60923389 AACTTACGTGCCTGTTACCA 60 60923329 60923350 TTAGTTCTCATCCACTTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm44 ENSRNOG00000001058 ENSRNOT00000001409 2 1 1 80 12 2518632 2518650 TCTCCAGTCACAACCTACC 58 2518693 2523120 AAGATTTAGTCAGCGTCAGC 58 NA Rattus norvegicus 81 Prx ENSRNOG00000018369 ENSRNOT00000024771 1 1 1 102 1 84320001 84320598 CCAAGCTGAACATCCAGAG 58 84320664 84320682 GAGAACTCGACGTCAACAG 58 NA Rattus norvegicus 81 Zwilch ENSRNOG00000009303 ENSRNOT00000012404 1 1 1 80 8 69105063 69105081 TATGCTTGTCACAGTTCGG 58 69104402 69105020 TGATATGAAACCACACTGCT 57 NA Rattus norvegicus 81 Cib1 ENSRNOG00000033498 ENSRNOT00000042558 1 1 1 80 1 142016028 142016046 GGATGGGACCATCAATCTC 57 142015172 142015986 AGGACAATCTTAAAGGAGCTG 58 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481,ENSRNOT00000021040 1 2 2 80 14 104499130 104499149 CAACAAGTTGTTGGTAGGGA 58 104499192 104499371 TCTGCAAATTCCTTGGCTG 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 3 3 3 81 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781873 CTCTTGAAGAACACGACTCC 58 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672,ENSRNOT00000022543 3 2 2 80 4 71656893 71656911 TAGTCACCCTCTTCAAGCT 58 71656952 71661382 GAAGTTTCTCTTGCATTTCCTG 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492,ENSRNOT00000078688 2 2 2 88 3 151360350 151360847 AGACTTGGATAGGGAGACAG 58 151360281 151360299 CAACTAACACCTGGTCAGC 59 NA Rattus norvegicus 81 Hpse ENSRNOG00000002188 ENSRNOT00000002983 1 1 1 80 14 10559028 10559065 AGATCACATGACAATATGAGGG 58 10560020 10560039 AGAGTCAATCACTTCTCCAC 57 NA Rattus norvegicus 81 Alpp ENSRNOG00000033672 ENSRNOT00000025978 3 1 1 80 9 94191317 94191335 TATGTTTGGAACCGCACAG 59 94191120 94191274 ATTAGGTTCAAAGAGGCCCA 59 NA Rattus norvegicus 81 Arid3b ENSRNOG00000019677 ENSRNOT00000068340 3 1 1 81 8 62577433 62577451 GGAGGGAGATCACCAAAGG 60 62576218 62577390 TACTTCATGTACTGGGTCCTC 59 NA Rattus norvegicus 81 Cd200r1 ENSRNOG00000039048 ENSRNOT00000002799 1 1 1 80 11 60849578 60850401 CAGATATTGAGGAGGATGAAATGC 60 60849521 60849542 TCGTGGTCACAGTATCATAGAG 59 NA Rattus norvegicus 81 Nme2 ENSRNOG00000002671 ENSRNOT00000003611 3 1 1 156 10 81650957 81650975 TACATGAACTCAGGGCCTG 59 81648436 81649998 CGTGAATGATGTTCCTGCC 59 NA Rattus norvegicus 81 Olr749 ENSRNOG00000049966 ENSRNOT00000051083 1 1 1 60 3 102472092 102472111 CTGAACCCTGCCATTTACAC 59 102472133 102472152 TTAGTTTCCTCATTGCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr749 ENSRNOG00000049966 ENSRNOT00000051083 3 1 1 60 3 102472093 102472111 TGAACCCTGCCATTTACAC 58 102472133 102472153 CTTAGTTTCCTCATTGCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Capn13 ENSRNOG00000032375 ENSRNOT00000047853 2 1 1 80 6 24615489 24620108 GAGCTGAGAAGATTCAGTACC 58 24615429 24615447 CTCTCCATTCTGTGTTGCC 59 NA Rattus norvegicus 81 Ccdc80 ENSRNOG00000002052 ENSRNOT00000059735 3 1 1 80 11 60650197 60654555 GAGAATTTCCTATCCAGGTTCC 58 60650138 60650156 TGAATAGGCCCAGTCTTCG 59 NA Rattus norvegicus 81 Rn60_20_0009.5 ENSRNOG00000050438 ENSRNOT00000066245 1 1 1 60 20 1601218 1601237 CCTTGGTAACTCCCACTCTG 60 1601177 1601201 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pif1 ENSRNOG00000015878 ENSRNOT00000021265 1 1 1 80 8 71127598 71129564 GTGAGATTAGGCAGATGTTCAG 59 71129605 71129623 AATTCCATCTCGTCCCACC 60 NA Rattus norvegicus 81 AABR07018244.1 ENSRNOG00000058011 ENSRNOT00000088277 2 1 1 80 15 48976358 48976379 CTTCGCCTACAGAAGGACC 60 48976422 48976441 AACATCACTGTCTCCAGGTG 60 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 1 2 2 80 6 102357187 102363480 CTAAGTGGAAGTCATTTCAGTGAC 60 102357130 102357148 TAGCCGTCTGGCTATTGTC 59 NA Rattus norvegicus 81 Dhx33 ENSRNOG00000007054 ENSRNOT00000009468 2 1 1 80 10 57628326 57628464 AGATCCAGAGGTGTAACCTG 59 57628265 57628283 TGAAGTCAAAGGTGAGCAC 58 NA Rattus norvegicus 81 Barhl1 ENSRNOG00000013209 ENSRNOT00000017725 1 1 1 93 3 7492166 7493613 AACCGCAGGACTAAATGGA 59 7492091 7492109 ACGGGAACATTCTCTGGAG 59 NA Rattus norvegicus 81 Rapgef6 ENSRNOG00000009995 ENSRNOT00000013481 2 1 1 80 10 39953110 39962495 TATCCGATATCTATCAGGCTACAG 59 39962532 39962552 CAGAATCAACAGGTCCTTCAG 59 NA Rattus norvegicus 81 AC127013.1 ENSRNOG00000059373 ENSRNOT00000088728 1 1 1 80 4 155091437 155091456 GAGATGGATAGCAGCCTAGC 60 155091496 155092247 TGATGCAAATATGACAAGGAGG 59 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000002151 ENSRNOT00000002942 1 1 1 80 11 57507149 57517017 TCTATGGGAAGGGAAGGAC 58 57517060 57517079 CCATCATCCTTGGTAACTGC 59 NA Rattus norvegicus 81 Dgkd ENSRNOG00000023238 ENSRNOT00000035338 1 1 1 80 9 95013260 95043842 CAGTTTCACGGTCATCACTC 59 95043885 95043903 GCTGCAATCCAATCTTCCA 59 NA Rattus norvegicus 81 LOC501317 ENSRNOG00000047982 ENSRNOT00000049865 3 1 1 80 19 28968253 28968910 AACTTCTATCGCAACCTGC 58 28968954 28968972 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Txndc15 ENSRNOG00000000133 ENSRNOT00000000146 2 1 1 80 17 9437924 9437943 GTGAGGAGAGGAATGTGACC 60 9434837 9437884 TTAGGAAATCCATGAGGTCCTG 60 NA Rattus norvegicus 81 Gzf1 ENSRNOG00000004735 ENSRNOT00000006287 3 1 1 80 3 143013104 143013122 TACATGTGCAATGCGTGTG 60 143013160 143013692 CGTATTCTTATCATGTATCGAGGTG 59 NA Rattus norvegicus 81 Slc15a1 ENSRNOG00000011598 ENSRNOT00000015890 1 1 1 80 15 106828494 106829880 GGAAGTTCAAGACAATTGTCTC 58 106828435 106828455 GGTCATTAATTGAGCTCACTG 57 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 2 2 2 80 20 10830405 10830425 CTGAGATTGGACTGTGAACAC 59 10820970 10830365 CAACTTCTCCTTCTTCTCCCT 59 NA Rattus norvegicus 81 Ube2q2l ENSRNOG00000023261 ENSRNOT00000035153 3 1 1 60 X 10772409 10772427 ATGGTTCGTGGACTCTGAC 59 10772367 10772385 CGAATCTTCCAGACGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2d ENSRNOG00000016940 ENSRNOT00000023139 3 1 1 80 1 211233072 211239379 TTCAGACAGTGCCATTATGAC 59 211239421 211239439 AGTGTAACATCCCTCCGAG 59 NA Rattus norvegicus 81 Slurp1 ENSRNOG00000005944 ENSRNOT00000007923 2 1 1 94 7 115962608 115962626 CACGGCCATTAACTCATGC 60 115962037 115962550 AAGGGAACTCTGCTTCCAC 60 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000013874 ENSRNOT00000018820 3 1 1 81 8 66863342 66863360 TTCTGTCTCTGAGCTTGCC 60 66862870 66863300 ATTGATCTTATCCTCCGTGACC 60 NA Rattus norvegicus 81 Rn60_20_0009.2 ENSRNOG00000051909 ENSRNOT00000080670 3 1 1 60 20 1505263 1505281 AGATTCTGGTCAGTGGGTC 59 1505221 1505239 ATCAAGGTTTGGGTCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir653 ENSRNOG00000036462 ENSRNOT00000054572 1 1 1 60 4 28658934 28658954 ACATTCTCTACTGAACCAAGC 58 28658894 28658915 CTTGCAATAGTGAAACAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1156 ENSRNOG00000029802 ENSRNOT00000049712 3 1 1 60 8 19811139 19811159 TTCTTCCTCTCCAATTTGTCC 58 19811180 19811199 TCTTGATGACTGTAGCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000079061 2 1 2 114 20 1897381 1897399 TTCATATCCGGACTCCAGC 59 1876758 1897303 GAATGGACAACCTGAGAGC 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000048154 2 1 2 61 X 53234811 53234829 AGTACCTTGAGGAGCAGGA 60 53233493 53234791 CTCTAAGAAGTTTCTCTTCCTACC 58 NA DesignNoJunction Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 3 1 2 61 X 53234651 53234807 CTACTACCAATGCCAGGGT 59 53234608 53234627 GTCTTAGAGCTGCTTCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC686066 ENSRNOG00000031434 ENSRNOT00000040570 1 1 1 60 3 8955469 8955487 CAGAAGGATGCCACATCTG 58 8955427 8955448 GGACCTTGAACTTTACATTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cel ENSRNOG00000010406 ENSRNOT00000014572 1 1 1 80 3 7135735 7135756 TGAGACTGACATACTCTTCCTG 59 7135099 7135694 TAGGTCTTGGCACTCTTGG 59 NA Rattus norvegicus 81 Magee1 ENSRNOG00000002660 ENSRNOT00000003573 2 1 1 60 X 76085295 76085313 GAGATCCTCAGACGAGCAG 59 76085337 76085355 GCTCCTTCAGTTCAAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd15 ENSRNOG00000015002 ENSRNOT00000034282 3 1 1 81 10 62645607 62647919 CTCAGCAGGTATGCTTCTG 58 62645544 62645562 CCTCAAACTCTCGAAGGGA 59 NA Rattus norvegicus 81 RGD1563570 ENSRNOG00000029461 ENSRNOT00000046342 3 1 1 60 14 43694360 43694378 AAACAGCCAAATTCTGCCA 59 43694400 43694420 TCTTGCCGTTCTTAATGAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910719 ENSRNOG00000053256 ENSRNOT00000045736 3 1 1 60 15 35587075 35587096 GTACTTGCAGTTCTCACATCTC 59 35587116 35587135 TACATGAATGCACCAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910575 ENSRNOG00000048985 ENSRNOT00000074673 2 1 1 80 4 173118785 173118803 TTACCTGTTGACTGGAGGA 58 173118845 173120420 CTAATTTCCTTGGGTTCTGCT 58 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 2 1 2 62 1 267607697 267607715 GAGGTTCTGTCCCTTTGCT 60 267607741 267608849 AATCGTCGGATTCCCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Fance ENSRNOG00000000504 ENSRNOT00000006191 1 1 1 80 20 7898342 7898733 TTCTTGACCGGATCCTCTC 59 7898777 7898795 TGTACTTGGCACAGAAGGA 59 NA Rattus norvegicus 81 Fance ENSRNOG00000000504 ENSRNOT00000006191 2 1 1 81 20 7898340 7898731 CTTTCTTGACCGGATCCTC 58 7898776 7898794 GTACTTGGCACAGAAGGAG 58 NA Rattus norvegicus 81 S100a10 ENSRNOG00000023226 ENSRNOT00000035240 1 1 1 116 2 193898571 193898589 ATGGAAAGGGAGTTCCCTG 59 193900909 193900927 TAGAAAGCTCTGGAAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Cox7a2l ENSRNOG00000004526 ENSRNOT00000065464 3 1 1 114 6 6696609 6697746 GATTCTTCCAGAAGGCTGAC 58 6696514 6696532 ATCAGGCAGTAGATGGTCC 59 NA Rattus norvegicus 81 Zfand3 ENSRNOG00000059659 ENSRNOT00000085131 1 1 1 96 20 8827143 8827161 CTTCACCGAGTGAAGAGGA 59 8843420 8876263 GACTGTGAATCTGCACCAC 59 NA Rattus norvegicus 81 Cst9l ENSRNOG00000005162 ENSRNOT00000006869 3 1 1 80 3 143174589 143175231 ATCGGAATAATACCTTCACCTG 58 143175271 143175290 ACACATTCTTGAAGAGCTGG 58 NA Rattus norvegicus 81 Rad50 ENSRNOG00000033065 ENSRNOT00000063772 3 1 1 80 10 39046415 39046433 GTAAGGAAGCCCAGTTAGC 58 39043625 39046371 TCAGGCGATTCTTCAATGG 58 NA Rattus norvegicus 81 Tpi1 ENSRNOG00000015290 ENSRNOT00000020647 3 1 1 80 4 157330202 157330220 AGTTAGACGAAAGGGAAGC 57 157329724 157330159 AGTCCTTCACATTATCTGCG 58 NA Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378 1 1 2 80 6 73385830 73385849 AGCTGAGAAGCCTATACCAC 59 73385886 73396581 TATAGTCCTTCGGTACATAATCCTG 60 NA Rattus norvegicus 81 Aebp2 ENSRNOG00000008929 ENSRNOT00000035507 1 1 1 80 4 174828994 174831361 AACATCTACAGAACAATGCCAC 59 174862221 174862239 GAACTCACCAGCAAAGCAC 60 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 3 1 2 95 10 15242317 15242545 TGTTGATCACCTATGGGCC 60 15242603 15251705 GTCTTGAGAACCTGCATCTG 59 NA Rattus norvegicus 81 Banf1 ENSRNOG00000020460 ENSRNOT00000027734 3 1 1 143 1 220744727 220745382 TTGACAAGGCGTATGTGGT 60 220744602 220744621 CATCACACCATTCTCGAAGG 59 NA Rattus norvegicus 81 LOC100911068 ENSRNOG00000049289 ENSRNOT00000043344 1 1 1 80 8 39083904 39083922 CAGGACAGTGTACTCACCC 59 39083714 39083860 TACACTGTTCGTGGGTGTC 60 NA Rattus norvegicus 81 Chl1 ENSRNOG00000045771 ENSRNOT00000073039 3 1 1 80 4 70279885 70286100 GTCATAGTAGAAGAGCCTCCC 59 70286141 70286160 CAACAAGATACCGTTGCTCC 59 NA Rattus norvegicus 81 Asrgl1 ENSRNOG00000020202 ENSRNOT00000027459 2 1 1 82 1 225311051 225313851 TTGTATAGGAGCTGGAGGT 57 225310987 225311007 TCACCTTCAGAATACTTTCCC 57 NA Rattus norvegicus 81 Olr1387 ENSRNOG00000048858 ENSRNOT00000049989 2 1 1 60 10 34553809 34553829 TTCTTCTGTGAAATGCCTGTG 59 34553851 34553869 CCTCTGTTCCTTCTGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785,ENSRNOT00000049812 3 2 2 81 1 222683391 222683412 GGAATTACCCTTCTGATTCTCG 59 222681023 222682263 GGTCAATCTGTGTCTTATACTTCTC 59 NA Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 1 2 2 83 7 70584141 70584159 TATGAGGATCTGCAGGAGG 58 70584204 70584526 TGATTCTTCCTCTTCGTTTCC 58 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 3 2 2 80 17 42724832 42726630 ACAGACACATTCAGATGTCC 58 42724771 42724790 TGTACAAGATGTTCCAGAGG 57 NA Rattus norvegicus 81 AABR07027854.1 ENSRNOG00000057759 ENSRNOT00000089746 2 1 1 82 17 46323275 46323293 ATTCTCAGAGACCAGGTGC 59 46323337 46323359 TCGTAGGTGATGTTCAGTGTC 60 NA Rattus norvegicus 81 Tnni3 ENSRNOG00000018250 ENSRNOT00000024640 2 1 1 80 1 72884843 72885330 CATCACTGAGATTGCAGATCTG 59 72885371 72885389 CTCACTCTTCGGAGAGTGG 59 NA Rattus norvegicus 81 LOC100911271 ENSRNOG00000042112 ENSRNOT00000065485 2 1 1 80 4 69435736 69435848 TGTTTCTTGAGAGCAGAACC 58 69435891 69435909 TACTTCTTGTCCCTTCCCT 57 NA Rattus norvegicus 81 Prmt1 ENSRNOG00000026109 ENSRNOT00000064272 3 1 1 80 1 100971893 100972400 GGCTTCTCTACCAGTCCTG 59 100971831 100971852 CTTCACTGTTAGGTAGTCCTCC 60 NA Rattus norvegicus 81 LOC499542 ENSRNOG00000032427 ENSRNOT00000046481 1 1 1 86 2 61756296 61756316 TTACAAGGACTTCAATGTGGG 58 61752630 61756248 GAAACAGTTCTGGTGCCAG 59 NA Rattus norvegicus 81 Slc7a15 ENSRNOG00000006119 ENSRNOT00000039492 1 1 1 80 6 33734858 33738056 AAGAACCCAAAGCAGAACCT 60 33734797 33734819 GATATTGACCAGGACATACAGGA 60 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 3 2 2 80 11 57247457 57254071 CTAGTTCACAGGAATCTCCCT 59 57254112 57254131 TGTGATGATGTTGACACCCA 60 NA Rattus norvegicus 81 Prr30 ENSRNOG00000025726 ENSRNOT00000009916 1 1 1 84 6 26780464 26780482 CTGCTCAGACTGGAATGCT 60 26780612 26781074 CAGTCTGTAGGACCAGTGTG 60 NA InUTR Rattus norvegicus 81 Ybey ENSRNOG00000021365 ENSRNOT00000038953 2 1 1 95 20 12917785 12919042 TTCATGAGAATCTGAAAGCAGG 59 12919094 12919116 GGAAGATATACTCCACTCCTAGG 59 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197,ENSRNOT00000061780 3 2 2 80 5 16995034 16995053 TGATGTGAAAGTCTTTGCCT 58 16989136 16994993 TCTTCTCTAACCTGATCAGCA 58 NA Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 3 2 2 82 1 165667646 165667666 GACTACTATGAGGTGGTACCC 59 165667085 165667602 ACACCAGGACCATAAGGTG 59 NA Rattus norvegicus 81 Bphl ENSRNOG00000017577 ENSRNOT00000023914 3 1 1 80 17 31511741 31522025 GGATTTACCAGGGTATCCGA 59 31511680 31511699 AGTCATGTCCATATAGGGCT 58 NA Rattus norvegicus 81 Klk8 ENSRNOG00000018580 ENSRNOT00000025174 3 1 1 81 1 99736778 99736796 ATCTGTGTCCCAAAGTTGG 58 99736838 99740286 GTGTTTGGAAAGTTCTCTTGAG 58 NA Rattus norvegicus 81 Meis1 ENSRNOG00000004606 ENSRNOT00000006157 3 1 1 86 14 103314092 103314113 GATAGATGATAGAGAAGGCGGA 59 103288807 103314045 CTATTCCAAGAGGGCTGGT 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000039284,ENSRNOT00000064284 1 2 2 80 10 103673706 103673726 TCTCACTAATTGCTTGGAGGA 59 103671115 103671753 GATCATCCTCCAGAGGCTG 59 NA Rattus norvegicus 81 Setx ENSRNOG00000013491 ENSRNOT00000017984 3 1 1 80 3 7714834 7715898 AAATTAAAGAGGTGCAGGGAC 59 7715940 7715958 TCAATGTGCAGCAGATGAC 59 NA Rattus norvegicus 81 NMS ENSRNOG00000038979 ENSRNOT00000059587 1 1 1 80 9 45613281 45613927 TCCCTAAGAAGGATCCTACCA 59 45614677 45614700 CTTTGTCAGTGTATCTTCCATTCC 60 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 1 2 2 80 10 37069723 37069743 GTAAAGCAGAAGCAGATTCGT 59 37069783 37071923 CAAGACCATGATCCCTTTCTC 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396,ENSRNOT00000028363 1 2 2 80 1 221261158 221261178 TTCCTAGACGACCTTGATGAC 59 221260966 221261118 ACCCTTACTCTTGGATTTCCC 60 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857,ENSRNOT00000017914 2 2 2 80 1 218443820 218444677 TGCCATAAAGTACCGATCCA 59 218443759 218443779 CACACGTTCGAGTAATACCAG 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 1 1 1 60 2 111061159 111061181 GTGCTGTAGTAATGACATACTGG 59 111059910 111061139 ACTGGTTGATTTGGGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Dcaf4 ENSRNOG00000008399 ENSRNOT00000011378 3 1 1 80 6 107007258 107007276 CGAGTAGGAGAAGACGAGG 59 107007319 107015582 CTGAGGTGTACCTCTCACTG 59 NA Rattus norvegicus 81 Col14a1 ENSRNOG00000026415 ENSRNOT00000067649 2 1 1 80 7 95155061 95160671 AGGAAGAAGTGGTTATGGTG 57 95160711 95160732 TGACTTTATACTCTGTGTCTGG 57 NA Rattus norvegicus 81 Cldn20 ENSRNOG00000023531 ENSRNOT00000030132 2 1 1 60 1 44447224 44447245 GAAAGCCACAAATATGAACCTG 58 44447264 44447284 GTAACATCGCTGAAATGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000050922,ENSRNOT00000077111 3 2 2 60 9 49480246 49480264 AATGTGTTCTCGCAGACCA 60 49480287 49480306 TGTTCTTGAAACTGAGCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp23 ENSRNOG00000022143 ENSRNOT00000030449 2 1 1 68 13 91019615 91019633 TTGTGAAGATCGTGGACGA 59 91018825 91018843 CAAAGCCTAGAGCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ackr4 ENSRNOG00000011478 ENSRNOT00000015265 1 1 1 80 8 112645477 112646675 TGGACAAACAGTTGCTTGG 59 112645415 112645433 AGTTCATCTCGGTGTCCTC 59 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 2 2 2 80 2 118942522 118942543 TTGATAAGTTCTGCCTTGATGC 59 118942581 118944601 AATGTTTCTCCGTGTTCATCAG 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 1 2 2 80 1 201067358 201070052 ACAAGTTAGAGGTGAGGGT 58 201067296 201067314 AGACCTGGTAAGACTCCTG 58 NA Rattus norvegicus 81 Atp5l ENSRNOG00000028884 ENSRNOT00000050878 2 1 1 84 8 49221997 49222016 CCCTACAGCTATTCAGAGCA 59 49220671 49221952 CACAGCTTCCTTAACTGTGAG 59 NA Rattus norvegicus 81 Lipk ENSRNOG00000019409 ENSRNOT00000026299 3 1 1 81 1 252336206 252337452 GCTCAAGGAAAGCAGTTCC 59 252337495 252337515 AGGTTGCAAATCCAGTTACTG 59 NA Rattus norvegicus 81 Msh4 ENSRNOG00000010431 ENSRNOT00000014106 3 1 1 80 2 260080203 260080222 ACATCAGTGAGTTCCTGGAC 60 260078467 260080162 CGAGCTGTGATATCATTCCTG 59 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 3 2 2 80 2 178609366 178612314 CTGGTGATGGGATGTTCCT 59 178609304 178609325 AGTGTAGAATCAAGTTGACCAC 58 NA Rattus norvegicus 81 Olr752 ENSRNOG00000029895 ENSRNOT00000040444 2 1 1 60 3 102529496 102529515 CACATTATGGGAGGAGTGGA 59 102529537 102529556 CTATGTACCTGTCAAACGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030773.1 ENSRNOG00000050974 ENSRNOT00000075199 1 1 1 80 10 103565622 103565640 ACAGCCAGTTACATTCAGC 58 103565682 103568000 AAAGACAATTAGCCGAGTCTG 59 NA Rattus norvegicus 81 AABR07030773.1 ENSRNOG00000050974 ENSRNOT00000075199 3 1 1 82 10 103563530 103563549 ACACCATTTCCCTATCACCC 60 103563594 103565590 CTCCCAGGACTTGAACCTG 60 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 3 2 4 80 1 267625419 267625438 TCTACAGCATGAGGTTCTGC 60 267625479 267627771 TGATGATTTCATGCCTGATGC 60 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678,ENSRNOT00000084388 3 2 2 80 4 115187300 115187318 CCTGCAGGAGTTTGAAGAC 59 115182189 115187257 AGTCTTTCCATGCAAACCTG 59 NA Rattus norvegicus 81 LOC100360933 ENSRNOG00000036981 ENSRNOT00000055614 2 1 1 91 1 143317085 143317105 CTATGGACAATGATCCTCCTC 58 143316331 143317032 CACTGACATTGAGTCCACC 58 NA Rattus norvegicus 81 Prmt10 ENSRNOG00000012928 ENSRNOT00000017347 3 1 1 80 19 34091800 34091821 GTTTGGAGAAGGAATTGTGGAG 60 34090362 34091760 CCACTTTCACCTTTGGTCTG 59 NA Rattus norvegicus 81 LOC102552463 ENSRNOG00000019623 ENSRNOT00000046708 2 1 1 60 1 65597869 65597889 AATACAACACAGTGGTATCCC 58 65597623 65597641 TCAACATGTGTCTCTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Pigl ENSRNOG00000003070 ENSRNOT00000004113 1 1 1 80 10 48788187 48821859 ATTGACAAGAGGGAGTTTCCA 59 48821901 48821919 TATGTGCTGGAGGATGGTG 59 NA Rattus norvegicus 81 Pigl ENSRNOG00000003070 ENSRNOT00000004113 3 1 1 80 10 48788189 48821860 TGACAAGAGGGAGTTTCCAG 59 48821903 48821921 TGTATGTGCTGGAGGATGG 59 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 3 2 2 81 16 19512855 19512874 GTGATGATGCCCTTAAAGCC 59 19512917 19515087 CCATGTTCATCCTTGCTCAG 59 NA Rattus norvegicus 81 Agl ENSRNOG00000016214 ENSRNOT00000055735 2 1 1 80 2 219828369 219828388 TAGCAAAGTGTTTAGGACCC 58 219827489 219828328 AGTGAATCATGTTGTAGCCTG 58 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 3 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259352 52259371 ACCCTGAATCCAAGTAGCAG 60 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048459 ENSRNOT00000073197 1 1 1 60 2 233909404 233909422 CTTCCCATCCACCAGACTC 60 233909445 233909464 AGATACAACAGGTAAGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcor ENSRNOG00000042679 ENSRNOT00000036791 1 1 1 80 1 260798408 260798426 TCATGGCTGACCAAGACTC 59 260798469 260801089 CAAGTACACCGTCTTGTTCG 59 NA Rattus norvegicus 81 Trpv3 ENSRNOG00000019606 ENSRNOT00000026596 2 1 1 80 10 59850644 59851616 CTCTGTGAAAGAGGGTATTGC 59 59851656 59851676 AAATGAAACCAGGCATCTGAC 59 NA Rattus norvegicus 81 Trpv3 ENSRNOG00000019606 ENSRNOT00000026596 3 1 1 80 10 59850585 59850603 AAGATGAGTTGGCTTCAGC 58 59850646 59851617 GGCAATACCCTCTTTCACAG 59 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 2 2 2 80 1 219411877 219412178 GGTTATGGCAAGGTGTTCC 59 219411815 219411836 CTTTCTCAAGACTTTCATGGCA 59 NA Rattus norvegicus 81 Bbs4 ENSRNOG00000026171 ENSRNOT00000031262 2 1 1 80 8 64125954 64126071 GAAATACGTGGCAGCTATCAG 59 64125894 64125915 CCCAGATTGTACAGAATCTTCC 59 NA Rattus norvegicus 81 Serp1 ENSRNOG00000011763 ENSRNOT00000017868 1 1 1 88 2 148721529 148721822 TAAGACCTCGAGAAATGCCC 60 148720176 148721478 TTGCAGATCCACAAACGAC 59 NA Rattus norvegicus 81 Serp1 ENSRNOG00000011763 ENSRNOT00000017868 2 1 1 88 2 148721529 148721821 AAGACCTCGAGAAATGCCC 60 148720175 148721478 ATTGCAGATCCACAAACGAC 59 NA Rattus norvegicus 81 Pde6c ENSRNOG00000016593 ENSRNOT00000022317 2 1 1 80 1 256845293 256849256 ACTTCACATTCCAGAAAGGAC 58 256849297 256849316 TCTTGTTGACAATAGGCAGG 58 NA Rattus norvegicus 81 Vom2r77 ENSRNOG00000049443 ENSRNOT00000072966 1 1 1 80 9 7789217 7789237 GTCCACTGTGGAAATCATCTG 59 7788966 7789178 GGAATGGTCCATAGGTAATCTG 58 NA Rattus norvegicus 81 Olr404 ENSRNOG00000045690 ENSRNOT00000049590 3 1 1 60 3 16117550 16117574 CTGATCTTGATAGCTTTCTTCTGAC 60 16117591 16117610 TGACAGATAGCCACATACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Afap1l2 ENSRNOG00000017164 ENSRNOT00000023113 3 1 1 80 1 277755239 277761262 TCCACCCAAGATGATTCCA 58 277755177 277755196 TCAGCCTCTTCATAGTAGCC 59 NA Rattus norvegicus 81 Vom1r61 ENSRNOG00000014181 ENSRNOT00000018981 2 1 1 60 1 75298706 75298726 AGTAATTCTAAGTGGGCAAGG 58 75298748 75298766 GGAAGGAGTCAAATGTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp57 ENSRNOG00000022730 ENSRNOT00000011704 3 1 1 80 20 2016942 2016962 CTGACTTCTACACAGAAGACC 58 2015573 2016903 CTTCTTGCTTTCCACAAATGTC 59 NA Rattus norvegicus 81 Tmem135 ENSRNOG00000016815 ENSRNOT00000022578 2 1 1 80 1 152891476 152891494 TCCCTATTTCCCTCAAGCA 58 152890654 152891433 TGAACTTCCATAACAGCTGC 59 NA Rattus norvegicus 81 Vamp5 ENSRNOG00000012659 ENSRNOT00000016984 2 1 1 84 4 100232477 100232496 AATTTCGACAAGGTCCTGGA 59 100231719 100232430 AGGCAGAACTCATGTCCAG 59 NA Rattus norvegicus 81 Dlx4 ENSRNOG00000004399 ENSRNOT00000005807 2 1 1 82 10 82960034 82960052 CCAGCATACCCAGTACCTG 60 82959670 82959990 AGATCTTTACCTGGGTTTGGG 60 NA Rattus norvegicus 81 Nkx6-2 ENSRNOG00000017748 ENSRNOT00000054887 2 1 1 99 1 211923100 211923118 AAGACTTTCGAGCAGACCA 59 211922826 211923037 TCTGGAACCACACCTTCAC 60 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073,ENSRNOT00000089056 2 2 2 80 16 19391923 19391942 CTCGTAAGTTGGTCATCCTG 58 19390290 19391882 GGTCGCTACTCTTTAGTTCAG 58 NA Rattus norvegicus 81 Adcy3 ENSRNOG00000003999 ENSRNOT00000005389 2 1 1 80 6 28630528 28630550 GAAGAAAGATGAGAGTCAGAAGG 59 28630589 28631061 AACAGGATGCTGACATTCTC 58 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 1 2 2 128 17 44757797 44757815 TCACCAAGTACACCAGCTC 59 44756638 44756659 AGTCTCCACTCAGATAAGTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Itm2b ENSRNOG00000016271 ENSRNOT00000023037 2 1 1 80 15 55256793 55256813 TTCATTTACCGACTGTGTCAC 59 55255566 55256752 TTCACGCTTCTGAATACCTC 58 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597,ENSRNOT00000091606 1 3 3 62 1 101692628 101692646 CTTCCTCCTTGTCCCATGG 60 101692672 101692690 CTGCATCATGACGTTCCTG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Otop3 ENSRNOG00000053055 ENSRNOT00000083302 2 1 1 91 10 103892978 103896260 AAGTTCTCAGGTAACGGGA 58 103896315 103896333 AAAGGGTAGAGCATCAGGA 58 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 2 2 2 91 5 157764180 157764198 GTCCAACTATGCCTCCTGG 60 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000015948 1 1 2 80 1 142422408 142429031 CATACATGGGTTTCTGTGATGG 60 142418653 142418673 GATTCTCTTCCTTCAGCAGAC 59 NA Rattus norvegicus 81 Sucla2 ENSRNOG00000017481 ENSRNOT00000065195 1 1 1 80 15 55513630 55513650 TTGCACAAGGAATAGTCATGG 59 55513690 55514577 CAACTCGTGTACCTTGTAACC 59 NA Rattus norvegicus 81 Ltf ENSRNOG00000031779 ENSRNOT00000047752 1 1 1 80 8 119298304 119298324 TGAGTGTTGGCAAGATTACCT 60 119298366 119299530 CATCAGCATCTCCCATCGT 60 NA Rattus norvegicus 81 Arl10 ENSRNOG00000045948 ENSRNOT00000073186 1 1 1 80 17 10569125 10571508 CCAACAAGCAAGACCTGAG 59 10569063 10569082 TCTGGTTGTCACTAGCAAGG 60 NA Rattus norvegicus 81 Arl10 ENSRNOG00000045948 ENSRNOT00000073186 2 1 1 80 17 10569123 10571506 AACAAGCAAGACCTGAGTG 58 10569061 10569079 TCTCTGGTTGTCACTAGCA 58 NA Rattus norvegicus 81 N4bp2l2 ENSRNOG00000001108 ENSRNOT00000001468 2 1 1 80 12 632226 632616 ATGTGGAAATGGCCATAGG 58 632164 632184 ATTCTTCAGGGTCAAACTTCC 58 NA Rattus norvegicus 81 LOC679748 ENSRNOG00000034106 ENSRNOT00000047079 2 1 1 73 1 78686713 78686731 CAACTACAGCAAGCTGCTG 60 78686658 78686676 AGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpcat3 ENSRNOG00000012269 ENSRNOT00000017090 1 1 1 80 4 157219997 157220668 CCTCACTGAAGACTATGATACCC 60 157220707 157220726 TTGTACAGCACGAATTTGCC 60 NA Rattus norvegicus 81 Olr1750 ENSRNOG00000043481 ENSRNOT00000075060 1 1 1 60 20 1945707 1945727 GAACTCCTTCTCTTAACCCTC 58 1945749 1945767 AGTGCCCTCTTTACTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000076614,ENSRNOT00000076797,ENSRNOT00000010065 3 3 4 118 7 116747595 116747613 ATGACTCGAGGAGAGGGAG 60 116747778 116747797 ATGTAGTCACCCTCCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 1 2 2 80 10 831375 833074 TTCACTAAAGTAAAGCCGCTG 59 833115 833134 GATCTTCTGCATCTCCTCCT 59 NA Rattus norvegicus 81 AABR07070416.2 ENSRNOG00000050915 ENSRNOT00000074153 3 1 1 147 8 69530727 69530748 GGACGAAGATCAATACTCTGAC 59 69489040 69489061 GAACAGTGCACAGATTATACAC 58 NA DesignNoJunction Rattus norvegicus 81 Cd4 ENSRNOG00000016294 ENSRNOT00000021915 1 1 1 80 4 157385154 157387860 GATGAAAGTGACTCAGCCC 58 157385092 157385112 AAGATCAGTCTCATCTTGGGT 59 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 2 2 2 80 3 176098011 176098515 CAATCTGAACAGCCACAGC 60 176098558 176098577 TAGTGTTCTAAGCCCAGCTC 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448,ENSRNOT00000005545,ENSRNOT00000088861 3 4 4 80 7 64776317 64776336 AATCAGCTCCTTCGAGACTC 59 64776379 64786606 TGGGATGACAGATTCTGCA 59 NA Rattus norvegicus 81 Spr ENSRNOG00000015455 ENSRNOT00000020749 2 1 1 80 4 116915429 116915766 TCATCAACAATGCAGGCAC 59 116915367 116915386 AGTAGTTGTTCACCTCAGCT 59 NA Rattus norvegicus 81 Ap5b1 ENSRNOG00000026114 ENSRNOT00000036185 2 1 1 80 1 220948855 220948874 CTGAAGGTGAGGATTTGGGT 60 220948914 220949038 GTAAGGAAACCTTGATCAGCTC 59 NA Rattus norvegicus 81 Nmur2 ENSRNOG00000014081 ENSRNOT00000018967 1 1 1 80 10 41401341 41401359 CCTTGAGGCGAACAAAGTG 60 41397389 41401297 AGGACCAAGACAAACAGCA 60 NA Rattus norvegicus 81 Mob1a ENSRNOG00000059474 ENSRNOT00000090987 3 1 1 80 4 115033136 115036299 TCCTTCTAAGATTGGTGTCCC 59 115036341 115036359 TAAACCCTGAAGAGACGCT 58 NA Rattus norvegicus 81 Ucp3 ENSRNOG00000017716 ENSRNOT00000024005 3 1 1 80 1 165490291 165491213 ACTGTGGAAAGGGACTTGG 60 165491254 165491275 TTGATGATGTCATAGGTCACCA 59 NA Rattus norvegicus 81 Noto ENSRNOG00000037863 ENSRNOT00000057516 3 1 1 85 4 117206723 117207721 CAGACTCACAGGGTCAGAG 59 117207770 117207788 TCTCGGTATTGTGGTCCTG 59 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000080122 3 1 3 66 20 2099718 2100541 ATTCCCAAGCTGACCTGAC 60 2099670 2099689 TAGTCAGAGGAGATGAGCAG 58 NA DesignRelaxed Rattus norvegicus 81 AABR07054522.1 ENSRNOG00000047718 ENSRNOT00000072211 2 1 1 83 3 158944524 158944544 GCTGGTTTGGATTGTCCAG 59 158944459 158944477 AATGTTTCCCACCACTGTG 58 NA Rattus norvegicus 81 Mrpl50 ENSRNOG00000053615 ENSRNOT00000078957 3 1 1 83 5 64789253 64789271 TGTCGGTTTGCAAGAAGAG 58 64785829 64789209 CTTCTCCTTCCTGGATCTAGAC 59 NA Rattus norvegicus 81 Olr1741-ps ENSRNOG00000056241 ENSRNOT00000085309 2 1 1 95 20 1829940 1829959 CTACCACTGAGCTAAATCCC 58 1829808 1829826 CATCAAACCAGTCCGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Slamf1 ENSRNOG00000059073 ENSRNOT00000082393 2 1 1 80 13 90206149 90206170 GGGTCATCATATTCGTCATCCT 60 90206209 90210495 GATTTGGTTTACCACTGGGAG 59 NA Rattus norvegicus 81 P2ry10 ENSRNOG00000037839 ENSRNOT00000048695 1 1 1 108 X 78196504 78196524 GAAAGGAATAATGGATGCCAC 57 78207784 78207802 TACTCTCAACAGTGCTGGT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 1 2 3 80 5 57447663 57448321 GTTGACTGCTGAGGAACAG 59 57447601 57447620 GTAACGATGACCATGACTGG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 2 2 3 81 5 57447663 57448321 GTTGACTGCTGAGGAACAG 59 57447600 57447619 GGTAACGATGACCATGACTG 59 NA Rattus norvegicus 81 Pbdc1 ENSRNOG00000002662 ENSRNOT00000003667 1 1 1 80 X 76046131 76046378 AGAGAACACTATCTTTGCACC 58 76046418 76046438 ACTGCTTTGTTATAGCCTTCC 58 NA Rattus norvegicus 81 Pbdc1 ENSRNOG00000002662 ENSRNOT00000003667 2 1 1 80 X 76046132 76046379 GAGAACACTATCTTTGCACCC 59 76046418 76046439 AACTGCTTTGTTATAGCCTTCC 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 2 3 3 80 6 8320613 8320632 CTTCGTCCGATGAGAAACAC 59 8320191 8320570 CTGAAGGGTAATGCTGTGG 58 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 1 2 2 80 17 8516179 8516200 GTAAATTGCTCTATCCAGACCT 58 8511383 8516138 CACAAAGTGAGACTTTGGC 57 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409,ENSRNOT00000013514 2 2 2 80 4 175870654 175873787 TTATTCGAGCACTAGGAGGG 59 175873828 175873848 TGACAGACCACTTAATACACG 58 NA Rattus norvegicus 81 Zmynd15 ENSRNOG00000019477 ENSRNOT00000046807 2 1 1 80 10 57067647 57068417 CCTACACTGCAGAGGTTACC 60 57068460 57068478 TCCAATAGCCACGTGTGAG 60 NA Rattus norvegicus 81 Ttf1 ENSRNOG00000039777 ENSRNOT00000061029 3 1 1 80 3 7646375 7646395 TGGAAGCTTGTGTACTATCGT 59 7646431 7648020 CTTAGTATCTTCCTCATTGTACCTG 59 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 1 2 2 81 7 70617610 70617710 AGAACTTCCAGTCGGTGTG 60 70617755 70617773 GTCTCTTTGCGATTAGCCG 59 NA Rattus norvegicus 81 Prm1 ENSRNOG00000002532 ENSRNOT00000003420 1 1 1 221 10 4945913 4945931 AAATTCCACCTGCTCACAG 58 4946207 4946225 CTAAAGGTGTATGAGCGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prm1 ENSRNOG00000002532 ENSRNOT00000003420 3 1 1 223 10 4945913 4945931 AAATTCCACCTGCTCACAG 58 4946208 4946227 ACCTAAAGGTGTATGAGCGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Edn1 ENSRNOG00000014361 ENSRNOT00000019361 3 1 1 81 17 22138008 22139400 CTAAGAAGGTTGGAGGCCA 59 22137945 22137963 GGTCTCTGTAGAGTTCCGC 60 NA Rattus norvegicus 81 Ndufaf1 ENSRNOG00000005006 ENSRNOT00000006874 3 1 1 85 3 111459829 111460955 AGGAAGTCAAGATTCCTTTCTC 58 111459765 111459783 CTTGTCCAGTATCAGTGGG 57 NA Rattus norvegicus 81 Kazald1 ENSRNOG00000016058 ENSRNOT00000021553 1 1 1 121 1 264830039 264830146 CTCATATCTCTGTGCAGTTTAGG 59 264830227 264830245 CAAAGCATTCCTGGCAAGG 60 NA Rattus norvegicus 81 Olr310 ENSRNOG00000045726 ENSRNOT00000074710 3 1 1 60 1 213348737 213348757 TGCTCAGTGCCTATATCAGTC 60 213348776 213348797 GAGGTAAACTTGCTTCTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051190.1 ENSRNOG00000005062 ENSRNOT00000006710 2 1 1 85 3 261259 261277 GTAACCACAACGAATGCCA 59 261326 261462 GAGGGATGACCATACGTGG 60 NA Rattus norvegicus 81 Cav1 ENSRNOG00000056836 ENSRNOT00000078250 3 1 1 93 4 44598815 44598833 GAGAAGCAAGTGTACGACG 59 44598888 44628002 CAAAGTCAATCTTGACCACGT 59 NA Rattus norvegicus 81 Slc6a16 ENSRNOG00000025220 ENSRNOT00000033882 3 1 1 80 1 101257008 101257266 AAGCAGTTTATGAGGATTGAGG 59 101257307 101257325 AGACCCGGGTAATAGTGAG 58 NA Rattus norvegicus 81 Olr365 ENSRNOG00000046596 ENSRNOT00000074432 1 1 1 60 1 230306488 230306506 CTTGTTCTGACACCCACAC 59 230306530 230306548 ACAACATCCAATGTAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt7a ENSRNOG00000048782 ENSRNOT00000070832 3 1 1 131 4 123037976 123040297 CTATCTCCGGATCGGTGAC 59 123037863 123037881 CCTATGACGATGATGGCGT 60 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000029664 2 1 2 81 X 105575454 105575472 GAAAGATTGCTGGGTGTGG 59 105575515 105575826 GGTTTCAGAGGTAAACCTCCT 60 NA InUTR Rattus norvegicus 81 LOC690271 ENSRNOG00000003080 ENSRNOT00000004114 2 1 1 80 13 99982236 99982254 AGCCCTGAGGTTAGAAGAC 58 99981453 99982193 GGAGGTAAATGACTGAAGCG 59 NA Rattus norvegicus 81 Rxra ENSRNOG00000009446 ENSRNOT00000012892 1 1 1 80 3 6292043 6293430 GTCCTCTTCAACCCTGACTC 60 6293470 6293491 TAGTGATGCATACACCTTCTCC 60 NA Rattus norvegicus 81 Myo3b ENSRNOG00000030022 ENSRNOT00000037188 2 1 1 80 3 56550307 56550325 GCACAAACGAGAGCTAGGA 60 56550369 56557718 GGTGTCTACCTTAGCCCTC 59 NA Rattus norvegicus 81 Myo3b ENSRNOG00000030022 ENSRNOT00000037188 3 1 1 80 3 56520161 56520181 AAAGAGTCTTACCGGAGACAG 59 56520222 56526231 GGAGTGTACCTCCTTGTCAG 60 NA Rattus norvegicus 81 Neb ENSRNOG00000006783 ENSRNOT00000059461 2 1 1 80 3 37685439 37685457 CCATGCTGGACTTTGAGAC 59 37683031 37685401 CTTTCCTATATTCTTTCCCACTCTG 59 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 1 2 2 80 1 220784683 220784783 GAGGCAGAGGATCTCTTCAG 59 220784622 220784642 GCCATCTATGATGAAGCTCTC 59 NA Rattus norvegicus 81 Rn60_5_0814.9 ENSRNOG00000051186 ENSRNOT00000076104 1 1 1 83 5 78002406 78003109 CTCGATGGGAAATCAAGATCC 59 78002343 78002361 TTCACCCTTCCTGAAGACC 59 NA Rattus norvegicus 81 Adcy5 ENSRNOG00000002229 ENSRNOT00000049180 3 1 1 80 11 68730064 68730082 GTACTGCCCAAGAACTGGT 60 68728551 68730020 GTAAGCAGTGATTCTCCGC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 2 2 2 80 4 148233572 148247007 ATCTTTAAGTGGTGGCTCTG 58 148247050 148247068 ATTTGTTGCCCAGAAGGAG 58 NA Rattus norvegicus 81 Chac1 ENSRNOG00000014387 ENSRNOT00000019392 1 1 1 80 3 111161535 111162315 TGAAGATCATGAGGGCTGC 60 111162358 111162377 TTCAGGTACTTCAGTGCCTC 60 NA Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 2 2 2 90 2 189995075 189995094 ATACAAGATCTGCCAGTCGG 60 189995556 189995574 ATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Lbx1 ENSRNOG00000025520 ENSRNOT00000021748 1 1 1 73 1 264974837 264974855 CCAGCAAGACCTTTAAGGG 58 264974128 264974146 AAAGATGGTCATCCCATCG 57 NA DesignNoJunction Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000087984 3 1 2 96 18 40596207 40596282 AGCCAAAGAATAAAGGCAAAGG 60 40596338 40596357 TGCCCATCCTCTTTAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Abhd8 ENSRNOG00000000054 ENSRNOT00000000060 3 1 1 222 16 19871066 19872580 CTCGATGACCTCAGGACAC 60 19870862 19870882 CCCTGGATTATCTTCAGGAGG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 AABR07043702.1 ENSRNOG00000029323 ENSRNOT00000038605 2 1 1 80 19 36178359 36178379 TAGAGTGAAGCAAACGAAACC 59 36178421 36179458 GTTTGTCTGCAGGTCTTCC 59 NA Rattus norvegicus 81 RGD1309621 ENSRNOG00000036913 ENSRNOT00000055437 1 1 1 81 4 183900631 183902129 ACCTGTGCAAGTTTCAGGA 60 183902172 183902192 TGATTCAGGCATCTTTGTCCT 60 NA Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000080944 2 1 2 89 10 14848823 14848841 CTCTACCTGTTGGTGTGCA 60 14847950 14848772 CACTCTTGTCTTCATCTTGGC 59 NA Rattus norvegicus 81 Gtf3c1 ENSRNOG00000016218 ENSRNOT00000022271 1 1 1 80 1 197060416 197060435 TGACCCTCTTGTGAGAAGTG 59 197059641 197060375 GGAACTTTAACCCTGTTTGCT 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 3 1 3 140 13 50559945 50559965 TTCTGTTTCCAGTGCAATGTG 60 50559173 50559843 TTGCAGTCAGAGCTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Mettl7b ENSRNOG00000007927 ENSRNOT00000010760 1 1 1 60 7 3386016 3386035 GTCCTTCAGGAAGTCCAGAG 60 3384595 3384613 CATGCTCCCAGAAGAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Tmed9 ENSRNOG00000021882 ENSRNOT00000036140 2 1 1 83 17 9565114 9565135 GCTCTATTTCCACATAGGAGAG 58 9564897 9565070 CGGTAATTTCCGATGACCA 58 NA Rattus norvegicus 81 LOC685217 ENSRNOG00000003548 ENSRNOT00000062053 1 1 1 95 4 5996995 5997019 CTCTATCAAGTTACAGGAAGAAGAG 59 5995914 5995936 GGGCTGAGGAACATAATTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Entpd6 ENSRNOG00000007427 ENSRNOT00000009946 3 1 1 80 3 146558366 146559579 AACTTCCTGACAGGCAGTC 60 146559623 146559641 GATCTGAGTGGATCCTCCG 59 NA Rattus norvegicus 81 Tnfsf11 ENSRNOG00000009559 ENSRNOT00000013210 3 1 1 83 15 62089194 62089213 ACACAGAAGCACTACCTGAC 60 62073579 62089151 CCACAATGTGTTGTAATTCCCT 59 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000083658 1 1 2 62 4 82126494 82126715 AATCAGGAAGCAGACCCAC 60 82126450 82126468 GCTGGAGAAGACGTCTCTG 60 NA DesignRelaxed Rattus norvegicus 81 Faim3 ENSRNOG00000004441 ENSRNOT00000038822 2 1 1 80 13 47611284 47612099 TTCATAGACAAAGTCACCACAC 59 47612139 47612158 GCTTACTGAAGTGTTGGTGG 59 NA Rattus norvegicus 81 RGD1306072 ENSRNOG00000025796 ENSRNOT00000030658 1 1 1 80 19 25283138 25283394 CAGTCTCAATCGACTGATTATGAG 59 25283433 25283451 AGGTAAGGCAGAGACTTGG 59 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 1 2 5 170 2 192553984 192554002 TGTCTTACCAACAGCAGCA 60 192616085 192616103 GAGGAGTTTGGACAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem55a ENSRNOG00000006697 ENSRNOT00000009375 1 1 1 80 5 28420136 28420155 ATGCCCTTGTAATTGTCTCC 58 28420198 28421228 ATTATGCGTCGACAGTTGG 58 NA Rattus norvegicus 81 LOC100909977 ENSRNOG00000042598 ENSRNOT00000066343 2 1 1 80 11 54185999 54187432 TATCACAGTTCATTAGACTGCG 58 54187468 54187491 TAATTCTCCTAGAGCTACTATGGC 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 2 3 3 80 2 236649902 236651304 CCTACATCAAGATGATTCTGGA 58 236651345 236651363 CGTTCCAGTAAATCCGGTC 58 NA Rattus norvegicus 81 Lvrn ENSRNOG00000003950 ENSRNOT00000039733 3 1 1 80 18 40900009 40900029 TGCCAACATACTTAGTTGCAC 59 40900071 40906370 AGACACGTATCTCCTTGCC 59 NA Rattus norvegicus 81 Tmem235 ENSRNOG00000048231 ENSRNOT00000074369 2 1 1 91 10 106869493 106869511 GTATATCCTGGAGGTGGCA 58 106869566 106871546 TGTTCTGTCCTTCACAGGT 59 NA Rattus norvegicus 81 Ren ENSRNOG00000002937 ENSRNOT00000003951 3 1 1 80 13 50509166 50513849 GCTTTGGACGAATCTTGCT 59 50509104 50509124 TGATCCTGGTCATGTCTACTC 59 NA Rattus norvegicus 81 LOC100911615 ENSRNOG00000018736 ENSRNOT00000025319 3 1 1 80 1 214438359 214438566 CTTCACCATCCGTTTGTTGG 60 214438609 214438627 CAGATGCTACCTGTCTGCT 59 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501,ENSRNOT00000068410 2 2 2 80 4 22881378 22881397 CAAGAGGAAGTTAGCGAGTG 58 22882643 22887135 AGATAGTACCCGGTGTCTC 58 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 2 2 2 81 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556153 22557558 CGAAGTCTTCAATATCCTTGGG 59 NA Rattus norvegicus 81 RGD1563015 ENSRNOG00000006658 ENSRNOT00000008726 1 1 1 80 5 138260984 138263410 GCTTCAGCAGGAAATCACAC 60 138260923 138260941 TGGTCATCGTCCCTATTGC 60 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000050061 ENSRNOT00000071116 1 1 1 80 5 60946550 60952072 ATGTCACAGGCTAAGTCTTCC 60 60946490 60946508 GGAGGCCTCTTGTCATGAG 60 NA InUTR Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 1 2 2 80 11 67102107 67104169 CAGTGATCGCCAACTTCAG 59 67104212 67104231 AGCAGGTCAAATTTATGCCA 58 NA Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000047385 ENSRNOT00000073777 2 1 1 60 10 35559012 35559032 TGAGACTGATTGTCATGTGTC 58 35559048 35559072 CAGGTATGGCTATAAAGTAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smc4 ENSRNOG00000010274 ENSRNOT00000013931 2 1 1 80 2 165622745 165622769 GAGTAGCATATCAAAGAGATAGACG 59 165622807 165622919 CAGTCATTGTACCCGACTG 58 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037,ENSRNOT00000064331 3 2 2 80 17 55257563 55259385 GCTGAATAACAAAGTTGCTGG 59 55257503 55257521 TCCAACTTCATCACCTCCT 58 NA Rattus norvegicus 81 Rn60_6_1033.1 ENSRNOG00000032924 ENSRNOT00000046038 3 1 1 60 6 93790458 93790477 TGAAGAAACACCGTGAAGAG 58 93790498 93790518 TTCTGCAGACGTTCTATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed3 ENSRNOG00000013889 ENSRNOT00000018603 2 1 1 80 8 97081319 97082834 TGGATTACCAGGTTATCACCG 60 97081259 97081279 CCCTGTAGATGATATTGCCCA 60 NA Rattus norvegicus 81 Cd209e ENSRNOG00000028803 ENSRNOT00000031997 1 1 1 81 12 2386782 2386801 GAAGTTCAGTGGGAACAGAC 59 2386308 2386740 GGCAGAGGCTATCAATTTCAG 59 NA Rattus norvegicus 81 Spic ENSRNOG00000005720 ENSRNOT00000064241 2 1 1 80 7 29228710 29228730 AGGCAATTCTAACTACTGTGG 58 29228119 29228669 GCAGAACCATTTGTTACACC 58 NA Rattus norvegicus 81 Purb ENSRNOG00000056150 ENSRNOT00000078282 3 1 1 60 14 86738921 86738939 CTTAAGAGCGAGTTCCTGG 58 86738879 86738897 GGTTCTCCTTGAGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdk2 ENSRNOG00000004172 ENSRNOT00000005641 3 1 1 81 10 82850702 82850722 CATGAAAGAGATCAACCTGCT 58 82844007 82850659 ACTCTGGACATACCAGCTC 59 NA Rattus norvegicus 81 AABR07002623.2 ENSRNOG00000051483 ENSRNOT00000080422 1 1 1 102 1 77806398 77806534 AAGCCCAAGTATCTCCAGC 60 77806133 77806151 CTTCAAAGAACCCGGTGAC 59 NA Rattus norvegicus 81 LOC102551819 ENSRNOG00000025970 ENSRNOT00000006672 3 1 1 123 9 84550609 84550632 CCAAAGATGAGACCAGACAC 58 84550718 84550736 CTAGTTCTTCCTGCTGGCT 59 NA Rattus norvegicus 81 Olr1318 ENSRNOG00000060661 ENSRNOT00000088053 2 1 1 60 8 43590647 43590667 GTCACCATGTCTTTCCAAGTC 59 43590688 43590707 CGATGCCTATACCATACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306746 ENSRNOG00000017380 ENSRNOT00000023654 2 1 1 80 4 118253180 118255463 GAAGAATGAAATGTCTGGTGC 58 118255503 118255523 CCACTCTTCCTTAGATTGCTG 59 NA Rattus norvegicus 81 Hyi ENSRNOG00000037518 ENSRNOT00000056815 3 1 1 91 5 137191339 137191358 CAGTATTTCCTGGACACTCC 58 137191493 137191607 CAGTGGAATATGTCCATTTGC 58 NA Rattus norvegicus 81 Pgr15l ENSRNOG00000021547 ENSRNOT00000035405 2 1 1 80 X 66318798 66319220 GTCAACATGGATGGTGATGTC 59 66319260 66319280 GTCCACATACTTCGAAACCAG 59 NA Rattus norvegicus 81 Iyd ENSRNOG00000016286 ENSRNOT00000021895 2 1 1 84 1 40092604 40093240 CATCAAAGCAGCAGGAACAG 60 40093287 40093305 ATGCTTCATGTCTGGGTCC 60 NA Rattus norvegicus 81 Anapc15 ENSRNOG00000019936 ENSRNOT00000027028 2 1 1 80 1 166983190 166983331 AAACTCAGCTTAGGAGCCA 59 166983372 166983393 ATCCAGATTAAACCACAGTGTC 59 NA Rattus norvegicus 81 Actn3 ENSRNOG00000019745 ENSRNOT00000026812 3 1 1 80 1 220131208 220131226 CAATGTCAACAAAGCCCTG 58 220130845 220131165 CCGTCAACAATTTCTTCAGC 58 NA Rattus norvegicus 81 Rn60_5_1061.2 ENSRNOG00000025809 ENSRNOT00000035806 3 1 1 60 5 101997749 101997769 CTCTGAGAAGATGCATGAGAG 58 101997791 101997809 TGGCTTCTCGAAGATGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esrrg ENSRNOG00000002593 ENSRNOT00000003489 1 1 1 80 13 106617937 106666802 ACATATCCCAGGCTTCTCC 59 106666844 106666864 AGGATCAAGATTTCCATCCAC 58 NA Rattus norvegicus 81 Slc25a31 ENSRNOG00000038398 ENSRNOT00000058476 3 1 1 81 2 127550408 127550426 GTTTGGTGTCTCCGTTCAG 59 127550470 127551379 TGGCAATAAGCCCTTAACAG 58 NA Rattus norvegicus 81 Gh1 ENSRNOG00000011207 ENSRNOT00000015818 2 1 1 82 10 94486865 94487044 AGAGAACTGACATGGAATTGC 59 94486803 94486821 GATCCTGCTGAGAAACTGC 59 NA Rattus norvegicus 81 Rn60_7_1164.3 ENSRNOG00000051320 ENSRNOT00000076415 2 1 1 60 7 116531899 116531919 ATCTAAGAAGATTGACCGCCA 59 116531859 116531879 CACATTCCCTTTGACCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787,ENSRNOT00000023103 3 2 2 80 4 118208113 118217804 ATGCCCAAGACTCTATACGT 58 118217847 118217865 TCCGATCTGGCTAAAGAGC 59 NA Rattus norvegicus 81 Wfdc9 ENSRNOG00000031380 ENSRNOT00000043716 3 1 1 90 3 161115293 161115312 TGAAGTTCTGGATCCTCCTC 59 161113196 161115241 TCTTCAGGCTTCTCCTTGAG 59 NA Rattus norvegicus 81 Fbxo40 ENSRNOG00000002459 ENSRNOT00000003340 1 1 1 80 11 66728249 66728267 GATGGTCCTCTTGCAATGG 59 66728310 66730648 AACTGCCAGATCTGATTGTG 58 NA Rattus norvegicus 81 Foxn1 ENSRNOG00000010870 ENSRNOT00000014672 3 1 1 80 10 65631718 65633684 CACAACCAAGTTCTGCAGG 59 65631656 65631675 CTGGTAGCAGTACATCCCAG 60 NA Rattus norvegicus 81 Ccdc126 ENSRNOG00000009322 ENSRNOT00000012490 1 1 1 83 4 78995657 78995675 ATACGTGAAAGCTCTGGCA 59 78995722 79001284 TTCAGATCGGCATAGCCTG 60 NA Rattus norvegicus 81 Ccdc126 ENSRNOG00000009322 ENSRNOT00000012490 3 1 1 84 4 78995656 78995674 GATACGTGAAAGCTCTGGC 59 78995722 79001284 TTCAGATCGGCATAGCCTG 60 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 2 2 3 80 X 65279580 65279600 AAGTTTGGTTCTTTGGTCTGC 60 65279639 65280650 GTGCAGTCACCTTCTTATTGAG 59 NA Rattus norvegicus 81 Mtf1 ENSRNOG00000050240 ENSRNOT00000072841 1 1 1 80 5 142355551 142355569 GTCACATGAAAGGTCACGA 58 142355610 142360704 AGTGATTTGTATCCTCTGATCC 58 NA Rattus norvegicus 81 Serf1 ENSRNOG00000017945 ENSRNOT00000024291 3 1 1 80 2 30347041 30347061 GACCCAGGAAATTAGCAAAGG 59 30347101 30351857 ATGATCTCTGAATCCCTCTGC 60 NA Rattus norvegicus 81 Specc1l ENSRNOG00000001303 ENSRNOT00000001764 1 1 1 80 20 14319215 14319236 AGAATACGGAGGATCTAAGAGG 58 14292461 14319178 GTGATGTCGATATTCTGATAGCC 59 NA Rattus norvegicus 81 Hoxb8 ENSRNOG00000007585 ENSRNOT00000009986 2 1 1 246 10 84131743 84131761 CAACTTCTACGGCTACGAC 58 84132750 84132768 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910378 ENSRNOG00000047334 ENSRNOT00000071256 2 1 1 60 2 46186160 46186181 AATATACAGAGACCCATTTCCC 58 46186201 46186220 ACCGTGATAACATAGATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 3 3 3 60 7 116606417 116606435 ACTGATACCGTTTGTGCCA 60 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 Gabpb2 ENSRNOG00000021105 ENSRNOT00000028661 1 1 1 80 2 196359736 196359891 GTTGAGGAAATGAAGGAAGGC 60 196359676 196359694 GTACTCCTGGGCTCTTCTG 59 NA Rattus norvegicus 81 Lyl1 ENSRNOG00000002950 ENSRNOT00000003980 1 1 1 97 19 25816363 25816475 CTCAACAGTGTCTACATTGGG 59 25816534 25816552 TCAACCAAGTCCAGCTCTC 59 NA Rattus norvegicus 81 Gper1 ENSRNOG00000001287 ENSRNOT00000001732 2 1 1 60 12 17310856 17310874 ACACCATCTTCCTCTTCCC 59 17310814 17310833 ATGTTCACCACCAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jazf1 ENSRNOG00000027026 ENSRNOT00000039580 1 1 1 80 4 82963788 83137420 CCACATCGATACAGATCCAC 58 82963727 82963748 CTATTAATGTAACTGAGGGCGA 58 NA Rattus norvegicus 81 Col8a2 ENSRNOG00000010841 ENSRNOT00000014388 1 1 1 81 5 144330608 144330626 GTAAAGTATGTGCAGCCCA 58 144330671 144331269 GAGGCATTTCCAGGTACTG 58 NA Rattus norvegicus 81 Mir181a2 ENSRNOG00000035630 ENSRNOT00000053753 1 1 1 60 3 23150361 23150379 ACCAAGGCAGCCTTAAGAG 60 23150403 23150421 GAATCCCAAACTCACCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac4 ENSRNOG00000020372 ENSRNOT00000027622 2 1 1 80 9 99084048 99084829 GTACACCCATGGGTTTCTG 58 99083986 99084005 TCTTGCTCACATTCAACCTC 58 NA Rattus norvegicus 81 Cdk2ap2 ENSRNOG00000018391 ENSRNOT00000025018 1 1 1 80 1 219346598 219346705 GTATGTACAGGCAATGAAGCC 60 219346745 219346765 ATCTCCTCTATGACAGACAGC 59 NA Rattus norvegicus 81 Vwc2l ENSRNOG00000027400 ENSRNOT00000033459 3 1 1 80 9 77837098 77837117 CTTCTATTGGTCATCCCTGG 58 77837159 77837319 GACAGGTCCATCTTCATCAG 58 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000046375 ENSRNOT00000074588 3 1 1 82 1 82817043 82818368 CTGCTCAGATATGCTGACC 58 82818413 82818432 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Adcy8 ENSRNOG00000004890 ENSRNOT00000006789 1 1 1 80 7 105404722 105404742 GATACCCTTGAAGAACCTGAC 58 105394829 105404682 GTGAAGACAAAGTACTCTGGG 58 NA Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 1 2 2 80 2 198291936 198291956 TGAACTGATCAAACTTGCCTC 59 198291998 198292404 GAACTCTCCACTCCTCCAC 59 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 1 1 1 62 9 65789154 65789172 TCATCTCCGGAAGTCTGTG 59 65784832 65789131 TCATGTATAGTTCTCCTTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Pknox1 ENSRNOG00000001184 ENSRNOT00000001566 3 1 1 80 20 10340714 10342012 CGGAAACAGACAACTTAATGGT 59 10342053 10342071 AGAGCTCGTTCACCTTCTC 59 NA Rattus norvegicus 81 Mterf ENSRNOG00000007899 ENSRNOT00000010425 2 1 1 173 4 27365450 27366897 GCTGTACCGTTGGATTTCTC 59 27371096 27371119 CATTATCACAGGATAGTCCAAAGC 60 NA InUTR Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832,ENSRNOT00000089460 3 2 2 81 10 15995176 15998464 CCTGACATTGACGAAGATGAG 59 15995115 15995133 TCTCTGCTTTATGAGGCCA 58 NA Rattus norvegicus 81 Sap30l ENSRNOG00000002575 ENSRNOT00000003473 1 1 1 80 10 43227980 43228000 AAAGGAAGAGGAAGACAAGTG 58 43228042 43229870 GCTGGAACAGATCAACCTC 58 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 2 2 2 112 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863378 102873768 TTCTTCTCATCCTGACGGTC 59 NA Rattus norvegicus 81 Kansl1l ENSRNOG00000028149 ENSRNOT00000067589 1 1 1 80 9 73729441 73752947 GGACTCCTGAGACTTTACCT 58 73729380 73729398 CCCAACTTAAAGGTGACCC 58 NA Rattus norvegicus 81 Olr304 ENSRNOG00000049502 ENSRNOT00000041953 2 1 1 60 1 213132413 213132431 CCTGCATCCAGTTATAGCC 58 213132453 213132473 TGAGGACTGAGTATAGCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osbpl11 ENSRNOG00000001782 ENSRNOT00000002428 2 1 1 80 11 70806655 70806675 CATTCCAAACTGCAATCAGTG 59 70799625 70806616 ATGAGACATCATTTCTCTGACC 58 NA Rattus norvegicus 81 Olr1055 ENSRNOG00000030191 ENSRNOT00000051359 1 1 1 60 7 16462271 16462289 TGCAGACCACTCCATTACC 59 16462313 16462331 TGAGGACCAGTAGGTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010747.1 ENSRNOG00000050241 ENSRNOT00000075623 1 1 1 80 2 150013515 150014365 TTGTTGTGGCAATAGACTACAG 59 150014403 150014424 ACTTGGTCACATAAACACAGTC 59 NA Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 2 1 1 94 10 84032661 84033606 GAAAGCAGCATTTGCAGAG 58 84033664 84033682 CCTTGCTATAGGGAATGCG 58 NA DesignNoJunction Rattus norvegicus 81 C5ar2 ENSRNOG00000049028 ENSRNOT00000071576 3 1 1 82 1 78167966 78180117 AGTCGGAAGAGAAGGTGTC 59 78167902 78167925 CTGTTCCTGATCATACTCATACTC 58 NA InUTR Rattus norvegicus 81 Cacnb3 ENSRNOG00000054274 ENSRNOT00000081206 1 1 1 80 7 140322697 140322715 GAAGTCCCAGATGAAGCAC 58 140322758 140322877 ACATCAAATGACTCAGGTGG 58 NA Rattus norvegicus 81 Cacnb3 ENSRNOG00000054274 ENSRNOT00000081206 3 1 1 80 7 140321761 140321948 TTTGATGGCAGGATCTCCA 59 140321992 140322010 CTTGCCAGGATTGTTGAGC 60 NA Rattus norvegicus 81 Rtcd1 ENSRNOG00000014575 ENSRNOT00000020149 2 1 1 80 2 219547061 219547080 GATCTGTACGTCAGCATCCA 60 219545116 219547019 AGCAACAATGATGATTCCGC 60 NA Rattus norvegicus 81 Sult1c2a ENSRNOG00000042111 ENSRNOT00000061861 3 1 1 81 9 4157491 4168137 CTGGACAAACAACTGTAAGTACC 60 4157432 4157455 CATTCTGTAGAAGTGGTAGTAGGA 59 NA Rattus norvegicus 81 LOC685849 ENSRNOG00000012068 ENSRNOT00000016068 3 1 1 84 5 75000260 75004519 CCCTAAAGAAGGGATCATGC 58 75000195 75000213 TGACAGTGAGCTCCTTCTC 59 NA Rattus norvegicus 81 Fam204a ENSRNOG00000009830 ENSRNOT00000013031 2 1 1 87 1 281370484 281370685 AAAGGAGTCTTCCAGCGAG 59 281370415 281370436 GGGTTCAAATCTATCATTGGCT 59 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 1 2 2 80 2 149547639 149547658 GTCTTTCTTCCTTGTGAGGC 59 149545979 149547601 GGATATTTCAAGTCCTGATGAGAC 59 NA Rattus norvegicus 81 B3gat3 ENSRNOG00000019804 ENSRNOT00000026875 2 1 1 80 1 225125673 225125692 GGAAAGTAGTCTCCTGAGCC 60 225125733 225126103 CACACCAGTACCTGAGTACAG 60 NA Rattus norvegicus 81 AABR07000137.1 ENSRNOG00000050129 ENSRNOT00000075346 2 1 1 80 1 1391103 1392251 GTGATGCTAGATGGTACAGAC 58 1391043 1391061 ATTCACTGAGCACTGTCCA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905,ENSRNOT00000078093,ENSRNOT00000058735 2 3 11 71 6 99152515 99152533 GCTACCATTGCAACTGCTG 60 99152568 99152586 TAGTCATCTTCGGAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_1085.1 ENSRNOG00000056687 ENSRNOT00000088842 2 1 1 60 5 104450302 104450321 GAGTTTGCAGACACTTACCC 59 104450343 104450362 CTATGGTGACATTTGTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1166.1 ENSRNOG00000031770 ENSRNOT00000041702 1 1 1 60 7 116616897 116616915 ATCAAGCACTCGAAGAGCA 59 116616855 116616876 TCTTCTGATCATTCTCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kars ENSRNOG00000019456 ENSRNOT00000046126 1 1 1 80 19 44220953 44220971 GAGATGACACTCCTGTCCC 59 44220816 44220911 ACGATACCTTGTTTCCTTGTC 58 NA Rattus norvegicus 81 Gle1 ENSRNOG00000015237 ENSRNOT00000020630 1 1 1 80 3 8522359 8522377 ATGAAGCAGTACCAGGTCC 59 8522420 8525941 CGTGATGGCTTCAATTCTGG 60 NA Rattus norvegicus 81 Fahd1 ENSRNOG00000014727 ENSRNOT00000019767 1 1 1 60 10 14215217 14215239 CCTACATCATCAGCTATGTTTCC 59 14215179 14215202 GTCAAGATAAGATCTCCTTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 1 1 1 86 15 62521317 62521335 CTGTGAAGGCTCAATTCCC 59 62521385 62531561 CAACCTCCATGAAACGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696,ENSRNOT00000038798 2 2 2 80 1 102126641 102126659 CGGGATGACAAGAGGACAG 60 102125295 102126601 CTTCATAGCAATGATCCAGTCAG 59 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 3 2 2 80 2 77998646 77998780 CTAGAATATAGCAGAGAAGGATTGG 59 77998816 77998836 CTTCTCGATCAAGTCTAGGCA 59 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174,ENSRNOT00000088570 2 2 2 80 X 84683973 84702078 AAGGCACATATTTGGTGCA 58 84683911 84683929 ACAATTTCTGGACTACCCG 57 NA Rattus norvegicus 81 Olr1404 ENSRNOG00000003668 ENSRNOT00000004865 2 1 1 60 10 36466308 36466326 TCTTCGGGTTGTTCTTGTG 58 36466349 36466368 AGGATGATGAGAAGGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0602.1 ENSRNOG00000051327 ENSRNOT00000076547 3 1 1 120 X 59591943 59591961 TAGCAACTCACTGGCAGAC 60 59591372 59591391 TTAGATGCAAATGCTCTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Nlrp1b ENSRNOG00000048125 ENSRNOT00000075185 1 1 1 60 10 57837477 57837498 AGATTCAGAGAAATTGGTCAGG 58 57837438 57837456 ATGTCCTCCTTCTTCTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rala ENSRNOG00000013454 ENSRNOT00000018190 3 1 1 94 17 49717384 49717402 CAACTACTTCCGAAGTGGG 58 49717459 49721430 AAATCTGTTCCCTGAAGTCC 58 NA Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 2 2 2 65 1 81376269 81376289 AAGATGATGAAGACCTTTCCC 58 81381492 81381510 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1559534 ENSRNOG00000001512 ENSRNOT00000002064 2 1 1 60 10 44659652 44659670 ATGTGGAGCAAGAGAAGGT 59 44659610 44659631 GATTTATTCTCAGTGCCATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akr1b1 ENSRNOG00000009513 ENSRNOT00000012879 3 1 1 87 4 61713818 61713836 AGTCTCCAACTTCAACCCT 58 61713352 61713768 GCACTCGATCTGGTTAACAG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005,ENSRNOT00000079417 2 3 3 81 15 61860425 61866337 GGCATTAGGACGATACAGG 58 61866379 61866400 GGAGTGTTACTGTATGTAGCTG 58 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005,ENSRNOT00000079417 3 3 3 81 15 61860425 61866337 GGCATTAGGACGATACAGG 58 61866380 61866400 GGAGTGTTACTGTATGTAGCT 57 NA Rattus norvegicus 81 Dpcd ENSRNOG00000017241 ENSRNOT00000023278 2 1 1 80 1 265303948 265303967 GGTGCACTATTTGTTCCCAG 59 265304007 265311932 CACTTTCTCACAAGGAGTTCAC 60 NA Rattus norvegicus 81 Syn3 ENSRNOG00000026866 ENSRNOT00000037918 1 1 1 80 7 23427368 23479504 TGGAACAGGCTGAGTTCTC 59 23479547 23479566 TTCTCACAACTTGCATGTCC 59 NA Rattus norvegicus 81 Mrgpre ENSRNOG00000054917 ENSRNOT00000077911 3 1 1 60 1 216970513 216970532 ATCCTGCTCTTCCTCTTCTG 59 216970472 216970490 ACAAGTTCTTGGACAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 1 1 1 194 14 78973717 78973735 TAGAGGCCTCTGAGGAGAG 59 78973893 78974160 AATCCATTGGCTGGAAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000039335 3 1 2 80 10 43620324 43620347 TTCATGCCAATCCCTAGCA 59 43620397 43620415 TTCAAGAGCCTCCAACCAG 60 NA Rattus norvegicus 81 Nek8 ENSRNOG00000012866 ENSRNOT00000017264 3 1 1 80 10 65426696 65426714 GACTCATCCTTACACGGTG 58 65426248 65426653 GGTTCATCTGTGACTGATCG 59 NA Rattus norvegicus 81 Lrrc8e ENSRNOG00000028460 ENSRNOT00000035142 2 1 1 106 12 2563475 2563493 GTTCAAGGTGCTCAAACCC 59 2560046 2563405 TCTTGTCCTGTGTCACCTG 59 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 1 2 2 80 15 89270276 89270294 TGGCATGGAATAAACCCGT 60 89268522 89270235 CTTCCTGAAATTCCTCTTCGTC 59 NA Rattus norvegicus 81 Rbm41 ENSRNOG00000057622 ENSRNOT00000086785 3 1 1 80 X 111320867 111321674 TCTGTCTCCATTGAAGAATGTG 59 111320808 111320826 TACTTCCTTCCCAAAGGGC 59 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 3 2 2 80 1 187820157 187821321 TTATACACAGCAGGCCAGTC 60 187820096 187820114 AGCTTTCGCAGATTTGCAG 60 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000003343,ENSRNOT00000055872 1 2 2 94 10 34278137 34283913 TGGATCTGATCTTCCTTGGT 58 34283970 34283988 TCCATGGCTAACTGTTGGA 59 NA InUTR Rattus norvegicus 81 Tcea2 ENSRNOG00000016288 ENSRNOT00000022073 3 1 1 80 3 177191335 177192121 AAGAAGCTCTTGGATGTTTCTG 59 177192160 177192180 ATCCTTTGAGGACGATGTAGG 59 NA Rattus norvegicus 81 Alox5ap ENSRNOG00000000907 ENSRNOT00000001207 1 1 1 97 12 6871249 6871267 GTGGAGCTTGAAAGCAAGG 60 6863839 6871188 TCTACGCAGTTCTGGTTGG 60 NA Rattus norvegicus 81 Tmem178b ENSRNOG00000047635 ENSRNOT00000073638 3 1 1 87 4 68012061 68049817 CTCATGGGAGGAACCTTCTG 60 68049867 68049885 ATAGGTAGCGTGGGTAACG 59 NA Rattus norvegicus 81 Lamtor1 ENSRNOG00000020016 ENSRNOT00000027150 3 1 1 85 1 166995141 166995159 TACCATAGCCTGCCTTCAG 59 166995205 166995446 ACATCAATGATGTTGCTAGCTG 60 NA Rattus norvegicus 81 Kcna1 ENSRNOG00000019750 ENSRNOT00000026731 1 1 1 60 4 159191855 159191877 GATAACACCACAGTCATCTACAC 59 159191817 159191838 TTTCCACAATGAAGAAAGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170,ENSRNOT00000078776 2 2 2 80 8 47675172 47675192 ATCTCTGTATGTTCCAGGAGC 59 47675233 47683051 ACAGCTCAGTCTCTTTCTCG 60 NA Rattus norvegicus 81 LOC684471 ENSRNOG00000048793 ENSRNOT00000074980 2 1 1 60 10 34415217 34415239 TATGATAGGTACATGGCTGTCTG 60 34415256 34415277 CCTTCCAATTCATCAGCATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361139 ENSRNOG00000037661 ENSRNOT00000057140 3 1 1 117 X 107613309 107613330 CAAGATGAGTGATAAACCAGAC 57 107612719 107613231 CTCCTGCTGGATAGTTTCC 57 NA InUTR Rattus norvegicus 81 LOC500354 ENSRNOG00000027979 ENSRNOT00000032568 2 1 1 60 4 170820742 170820761 CACCATGAAGACTCAGATCC 58 170820782 170820802 GAAGTCCTTAATGCAGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh1 ENSRNOG00000015020 ENSRNOT00000020322 2 1 1 80 9 71884609 71885216 ACCAATCCCATTGCTTCCA 60 71884547 71884567 GCTGAGCTCAGTATTGTTGTC 59 NA Rattus norvegicus 81 Tph1 ENSRNOG00000011672 ENSRNOT00000056109 2 1 1 80 1 102673624 102674690 TCAGTGAGCTCAGACATGC 60 102673562 102673580 GACATTCCTGTTTGCAGGC 60 NA Rattus norvegicus 81 Arid4b ENSRNOG00000049751 ENSRNOT00000010836 3 1 1 80 17 53899570 53899591 ATGGAGATGAGAAGACACTGAG 59 53895940 53899532 GGTCTAGTGTTTCACTTTCAGC 60 NA Rattus norvegicus 81 Sdhaf1 ENSRNOG00000047045 ENSRNOT00000074494 1 1 1 60 1 88780139 88780157 TACTGAAGAACCCGTCGAC 59 88780097 88780115 TAGGGCATCACTATCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf39 ENSRNOG00000004521 ENSRNOT00000066702 2 1 1 80 6 86792471 86792491 ACAGTAGAAACGAATCCTCAG 58 86792533 86792987 AGCCATCAAGTGATTCTCC 57 NA Rattus norvegicus 81 Mta2 ENSRNOG00000019913 ENSRNOT00000027141 3 1 1 80 1 225141260 225142375 GTACCGGGTAGGAGATTATGTC 60 225142414 225142434 TTATTGAGCTCCTCAATCCGT 59 NA Rattus norvegicus 81 Ufc1 ENSRNOG00000003706 ENSRNOT00000004938 2 1 1 113 13 89663397 89668157 TCCCTTATCCGGTATGTCG 58 89663114 89663132 GAAGTCGTGGATGTACCAG 58 NA Rattus norvegicus 81 Xpo1 ENSRNOG00000009935 ENSRNOT00000014062 1 1 1 80 14 108037780 108037798 GGTTTCTGAGAGCACACTG 59 108037841 108037955 CTCCATCATGGGTTTCATGC 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910,ENSRNOT00000081951,ENSRNOT00000066474 3 3 3 83 10 75094269 75094287 TGAATCCTCGCTGGAATGG 60 75094332 75095256 CTCGGTATGTGATGATCTGGA 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384,ENSRNOT00000072624 3 2 2 80 4 126617618 126617638 CTCTATCCAAGCAACCATGAC 59 126617463 126617576 AGAGGAATCTCCTTTCCCG 59 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000090387 3 1 3 82 17 53967297 53967538 TCTGGAAGAACAGTCATGGT 59 53967582 53967601 TTGGTGAACTTTACTGTGGG 58 NA InUTR Rattus norvegicus 81 Samd5 ENSRNOG00000023549 ENSRNOT00000034744 3 1 1 63 1 3762661 3762679 CATTCACCTGAGCAAACCC 59 3715463 3715482 TAAGTACTCTAGGATGCCGG 58 NA DesignNoJunction Rattus norvegicus 81 Tpo ENSRNOG00000004646 ENSRNOT00000006526 3 1 1 80 6 49062704 49074172 TGCAACAACAGAGATCACC 58 49062642 49062661 ACCATCTTCGTAGACAGGAG 59 NA Rattus norvegicus 81 Ppic ENSRNOG00000017416 ENSRNOT00000023485 3 1 1 83 18 48376465 48376483 TTCATCACCTTGACCAAGC 58 48372791 48376418 ATGTACCACAGTCATCCCA 58 NA Rattus norvegicus 81 Nkiras1 ENSRNOG00000008565 ENSRNOT00000011438 2 1 1 92 15 8183633 8183651 CAAGGTTGTCGTTTGTGGG 60 8182143 8183579 CAGTCTTCCATGCCAATAGTG 59 NA Rattus norvegicus 81 Lyrm9 ENSRNOG00000037204 ENSRNOT00000056192 2 1 1 84 10 66108653 66108671 CGTTACTTACTGCGTTGCT 59 66108719 66110742 CTTGGAAACTCTGCCTGAC 59 NA Rattus norvegicus 81 Nol10 ENSRNOG00000005344 ENSRNOT00000007169 1 1 1 80 6 42720473 42721835 GAGAGTCCAGTTAAAGAAACTTCC 60 42721873 42721892 TTCTGCTTCTCCTCTTCCTC 59 NA Rattus norvegicus 81 Inppl1 ENSRNOG00000019730 ENSRNOT00000066915 2 1 1 80 1 166903766 166903868 TCCTTCGATTTAGTGAGGAGG 59 166903706 166903724 GCCAAGCATATGTGTCTCG 59 NA Rattus norvegicus 81 AABR07055539.1 ENSRNOG00000058125 ENSRNOT00000034346 3 1 1 80 7 5573633 5573654 TCATGAATCAGAAAGTCTGCAC 59 5573572 5573594 ATAACATGAGCAATGGGATGG 59 NA Rattus norvegicus 81 Fech ENSRNOG00000018053 ENSRNOT00000024328 2 1 1 80 18 59947031 59947052 TTACCAGTGATCACATTGAGAC 58 59944229 59946990 TTTCAGCTCCACACTTCTG 58 NA Rattus norvegicus 81 Raph1 ENSRNOG00000014722 ENSRNOT00000036194 3 1 1 80 9 67305672 67305693 AAATGTATACTATGGGCAGGAC 58 67303631 67305631 ATCTGTGGGTGCTTTAAGG 57 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555,ENSRNOT00000014979 3 2 2 80 1 251199293 251200246 CTCCATTTGCAAAGGATCGT 59 251200283 251200307 CATCTACAAAGATCTCAAAGAAGGG 60 NA Rattus norvegicus 81 Zfpm2 ENSRNOG00000004109 ENSRNOT00000029419 3 1 1 91 7 79638088 79638106 AGCCAGCAGAATCAGATGG 60 79638161 79738238 TTCTAGCTCTCCTGGTCCA 59 NA Rattus norvegicus 81 Ccdc25 ENSRNOG00000015939 ENSRNOT00000021621 2 1 1 80 15 42542284 42544510 CAATAGCATTCAAGGCTGC 57 42544553 42544572 ATGTCAGCTGTCTTCTTCAG 58 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643,ENSRNOT00000022445 1 2 2 80 17 53643017 53652479 ATGGACTACAAGCTTCCGA 58 53642955 53642973 TACTGCTTTCTGGGTCCTG 59 NA Rattus norvegicus 81 Rn60_14_0447.1 ENSRNOG00000051349 ENSRNOT00000074180 2 1 1 60 14 44803396 44803414 GCCCATTAAGGAGCATCTG 58 44803354 44803373 GAAGTCGTTGACCAGATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn3 ENSRNOG00000040188 ENSRNOT00000061847 1 1 1 80 3 2946791 2946809 AATAAGCAAGGTCTCACCC 57 2946549 2946750 CCGTACATCATAAATGTGACAG 57 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000083176,ENSRNOT00000044145 1 2 2 80 1 88189584 88189698 CCTACCTTCACCAGGACTG 59 88189742 88189760 GGTCTGGAGCATTGATGTC 58 NA Rattus norvegicus 81 Fdft1 ENSRNOG00000021314 ENSRNOT00000032089 1 1 1 80 15 46350590 46351852 CAGGACTGGGACAAGTACTG 60 46350529 46350550 AAACTCTGAGGCAGAGAATAGG 60 NA Rattus norvegicus 81 Reg3g ENSRNOG00000006579 ENSRNOT00000008665 3 1 1 80 4 109530985 109531200 GGTTTGATGCAGATCTGGC 59 109530923 109530943 CAAAGGAAGCTTCAGATCCAC 59 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000035637,ENSRNOT00000079779 3 2 2 60 5 144108056 144108074 TGTGGACCTTCGAGATGAG 59 144108096 144108116 CATGAAAGCATCAACGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bspry ENSRNOG00000015105 ENSRNOT00000020366 1 1 1 80 5 78337995 78338013 CTGCAGTTACAGAGTGCTG 59 78338055 78346612 AGCCATGATCATTGCTTTCTG 59 NA Rattus norvegicus 81 Npepps ENSRNOG00000023095 ENSRNOT00000031045 3 1 1 80 10 85172846 85176483 GTTACTATGGAATGGTGGACTC 58 85172787 85172805 GCAGTGGTCTACACAAAGG 59 NA Rattus norvegicus 81 AABR07020860.1 ENSRNOG00000048922 ENSRNOT00000005532 3 1 1 80 13 43825358 43825376 GGGAAAGAGCAGAAGAGGA 59 43825418 43830084 CATGTTTGTTTCCTTTCAGCC 59 NA Rattus norvegicus 81 Rn60_X_0651.3 ENSRNOG00000051090 ENSRNOT00000076515 1 1 1 60 X 64160657 64160676 AGTATCACCACAACCATGAG 57 64160696 64160717 CAGTGTTGGTATCACAGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 1 2 2 80 1 47660763 47660781 GTACCTCCAAGACTCCCAC 59 47660825 47661754 GTTCCTCCAAGATCCACGA 59 NA Rattus norvegicus 81 Sh3d21 ENSRNOG00000024566 ENSRNOT00000045841 2 1 1 80 5 144175592 144175610 ACAACTTTGTCATCCCACC 58 144163977 144174106 CCTTAATAGGAGCTGATTCCC 58 NA Rattus norvegicus 81 LOC685563 ENSRNOG00000049069 ENSRNOT00000049147 1 1 1 121 16 68526 69721 ATTTATTTCATCAGGCACTCCC 59 68426 68444 TAGGATGCTGGCAGTTCAG 60 NA Rattus norvegicus 81 Klf14 ENSRNOG00000027557 ENSRNOT00000048436 2 1 1 60 4 58249916 58249934 CATCCAAGCGACATCAGTG 59 58249874 58249894 TGCGAAGACTTGTAATAGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polg ENSRNOG00000032293 ENSRNOT00000044567 1 1 1 80 1 141174883 141175028 CTTCAAGGAAGTCTCGATGG 58 141174822 141174843 TAAACATTTCTGACTCCGTACC 58 NA Rattus norvegicus 81 Ticam2 ENSRNOG00000042070 ENSRNOT00000059466 2 1 1 110 18 40572004 40572023 TTCAAAGTTCTGTGGCAAGC 60 40569627 40571931 AGGAGAAAGCAGTCAGCTG 60 NA InUTR Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138,ENSRNOT00000077307 2 2 2 80 5 171280268 171280288 AAAGAAAGAAGAGACGAAGGC 59 171280330 171281215 TTCTCCTTCTCCTGGACTC 58 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000029537 ENSRNOT00000041318 2 1 1 80 10 60405753 60405771 CTGTTCTGGGCACTTACTG 58 60352574 60405712 TATATTGTCCTCACAGAACGAC 58 NA Rattus norvegicus 81 Snrpf ENSRNOG00000005556 ENSRNOT00000007351 2 1 1 88 7 34483366 34483386 GTGATGGTGAAACTTAAGTGG 57 34479359 34483316 TCTGTATTTGCAAGCTGCA 58 NA Rattus norvegicus 81 LOC100912697 ENSRNOG00000009354 ENSRNOT00000012388 3 1 1 60 3 2396652 2396670 ACAGCACTACACCAGTCAG 59 2396693 2396712 ATTTGACTAGCAGCTTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp15 ENSRNOG00000002450 ENSRNOT00000003359 2 1 1 80 13 105163732 105163751 AACAAAGAGCTGGAGAAGGA 59 105161855 105163691 CTCCCGCTTCTTATCAATCTG 59 NA Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 3 2 2 83 4 180131576 180132031 CATAGAGACAGAGGCACCT 58 180132078 180132096 AGGATACGGAGGTTACTGG 58 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000077012 2 1 3 83 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068772 65071785 TGGCATAAACCTGTAATCGG 58 NA Rattus norvegicus 81 Pop4 ENSRNOG00000027646 ENSRNOT00000020474 2 1 1 80 1 94662689 94662708 GAGTTACGGGAATCCTTCTG 58 94661610 94662648 TAGGGATAACTTTCAGGTGGT 58 NA Rattus norvegicus 81 Txlnb ENSRNOG00000060021 ENSRNOT00000089066 3 1 1 81 1 12954819 12957775 GCAGGAAATGGATAATACGAC 57 12957818 12957836 ACAATTCTCAAATCGGGCT 57 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 3 3 3 80 7 99177271 99177291 TTGTCCCTATTGGAGTACCAC 59 99177332 99177519 ACACTTCAGTGTTCTTGGGA 59 NA Rattus norvegicus 81 LOC300249 ENSRNOG00000009614 ENSRNOT00000012738 2 1 1 60 7 143444166 143444186 CAAGAGTAACTACAACCTCCC 58 143444205 143444226 CAAGATTCTGCTAAGGTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_12_0174.2 ENSRNOG00000026725 ENSRNOT00000029631 1 1 1 60 12 15207312 15207334 CAAGTACGATGACATCAAGAAGG 60 15207354 15207372 AATGCCCTTTAGTGGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdh2 ENSRNOG00000014490 ENSRNOT00000019507 1 1 1 80 2 240467660 240467678 GAGCCAAAGTCATAGCCAC 59 240467720 240468913 GGACTCGAGTTTGAATACCTG 59 NA Rattus norvegicus 81 Zfand6 ENSRNOG00000013506 ENSRNOT00000018098 2 1 1 80 1 146757372 146757392 GTATCCGAGACAGAAGACCTG 60 146748756 146751732 TGATACTGAAGATGGAGGATCAC 60 NA Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000084243 2 1 2 100 16 21132426 21136897 CACTTAGAGAAGGCGGTCC 60 21136959 21136979 AGGTTATAGCTCACGGATCTG 59 NA InUTR Rattus norvegicus 81 C4bpa ENSRNOG00000004062 ENSRNOT00000005461 1 1 1 80 13 47359510 47361799 GTGAGCTCAATAGTTGCACTG 60 47359450 47359469 CATCTTCCTTTCTTGGCCTG 59 NA Rattus norvegicus 81 LOC100912415 ENSRNOG00000048360 ENSRNOT00000071677 2 1 1 60 4 1752326 1752347 TTCATTGACCTCTGTTACTCCA 59 1752287 1752305 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt4 ENSRNOG00000009094 ENSRNOT00000012363 3 1 1 81 7 36648510 36648530 GCAAGGGAAGTGTATGAAGAG 59 36646706 36648039 GCTTCCGGTCTTGATTCTC 58 NA Rattus norvegicus 81 Fcf1 ENSRNOG00000004723 ENSRNOT00000006297 2 1 1 80 6 108802044 108802064 TCCCTTGTATAACCGATTGTG 58 108802106 108805106 CTTTGGCGATTCTTAGTGC 57 NA Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076034 3 1 2 69 X 71272043 71272061 CTGCATACATTCCCTGGGA 59 71272093 71278017 TTTATACCCAGTGTCTCCCT 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076816 1 1 2 83 X 71272091 71278500 CCAGGGAGGTGTGAATGAG 60 71278547 71278565 AATGGCTGTAGAATGCCGA 60 NA InUTR Rattus norvegicus 81 LOC102555170 ENSRNOG00000046069 ENSRNOT00000071914 1 1 1 80 7 142011525 142011543 TGTCCCTCCATCTCATCCA 60 142011585 142020655 TAGAGTAGAGGACACCCAGAG 60 NA Rattus norvegicus 81 AABR07041078.1 ENSRNOG00000000620 ENSRNOT00000045110 2 1 1 80 X 118747157 118747177 GACCACATCATAACCTCTCAG 58 118747218 118748386 GAAGTGGTCTAACTGAGAGG 57 NA Rattus norvegicus 81 Ifrd1 ENSRNOG00000050997 ENSRNOT00000073910 3 1 1 80 6 60145839 60145859 GCATCCATTGAAACAATGAGC 59 60145646 60145798 ATCAAGAACTTCTGGTCCGT 59 NA Rattus norvegicus 81 Trim47 ENSRNOG00000008215 ENSRNOT00000010887 1 1 1 80 10 104655943 104656380 GCTCAGAAGCTGATGTGGA 60 104655881 104655901 TGAGGAAATAATCCCTGGGAG 59 NA Rattus norvegicus 81 RGD1311084 ENSRNOG00000018486 ENSRNOT00000024953 1 1 1 82 3 9630418 9630436 AAGAACCTTCCTGGACACC 59 9630045 9630373 GAAAGGATTCCAGCTTCTGG 59 NA Rattus norvegicus 81 Spaca3 ENSRNOG00000006994 ENSRNOT00000009172 3 1 1 94 10 68233194 68233212 CATCTTCCAGATCAGCAGC 58 68233269 68233690 CATTGCTCAACAAATCCGTG 58 NA Rattus norvegicus 81 LOC100909678 ENSRNOG00000049858 ENSRNOT00000075005 3 1 1 83 4 82270517 82271525 CAGTTCAGGACCCGATAGG 59 82270452 82270473 TTGAAGTGGAATTCCTTCTCCA 60 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000052968 ENSRNOT00000078872 1 1 1 80 3 62484866 62484980 AACTTTGGTGGAAGAGGAGG 60 62485020 62485041 ATTATATCCACCATCACCACCT 59 NA Rattus norvegicus 81 Ntn3 ENSRNOG00000006970 ENSRNOT00000009735 3 1 1 80 10 13578715 13578859 CCTTGTGTTAAGACTCCTGTC 58 13578539 13578557 TCTGCAATGTGACTCACAG 58 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264,ENSRNOT00000003946 2 2 2 95 X 70445601 70445725 CACTTCAGATGGTTGCTAACC 59 70446425 70446445 TCTTCACTTCAAAGTCAACCC 59 NA Rattus norvegicus 81 Zfyve26 ENSRNOG00000059875 ENSRNOT00000079351 3 1 1 80 6 102446306 102447431 CGGACCCTGATAATGTGGA 59 102446244 102446262 GATGTGACACCAGTTGGGA 60 NA Rattus norvegicus 81 Krba1 ENSRNOG00000007405 ENSRNOT00000043856 2 1 1 80 4 78042669 78042687 ACAATACCTGTTCTGCCGA 59 78042731 78043486 TCTCTTCTGCTCTTCCTGC 59 NA Rattus norvegicus 81 Trim65 ENSRNOG00000024145 ENSRNOT00000046026 1 1 1 80 10 104677673 104677961 AGTCAGATTGAGAGTTCAGCC 60 104677613 104677631 CTTCTCCAGAACCTGGAGC 60 NA Rattus norvegicus 81 Hinfp ENSRNOG00000009499 ENSRNOT00000012868 1 1 1 80 8 48631354 48631626 ATTGCGAGAGTGTCTTCGA 59 48631292 48631311 CAGCTTGGTATTCACAGCAC 60 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 2 2 2 80 12 18692686 18692705 CAGTATGCAGATTTGCTGGT 59 18692746 18695672 CCCAAAGATGTCTTTCATGGT 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 1 2 2 80 19 39070940 39071876 TGGAGGAGATGTCCAAATCC 59 39071919 39071937 TTGAAGGCCATCCAGTACC 59 NA Rattus norvegicus 81 Olr623 ENSRNOG00000047555 ENSRNOT00000071021 1 1 1 60 3 76518381 76518401 GGACATTTGCTATACCTCCTG 58 76518341 76518360 TCTCCTTACAAGCAGATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pappa ENSRNOG00000033527 ENSRNOT00000040898 1 1 1 80 5 81125666 81125684 GAGTCCATTATCCTGCCTG 57 81125727 81134130 GACAATCCTCTGTACTCGTG 58 NA Rattus norvegicus 81 AABR07011698.1 ENSRNOG00000028120 ENSRNOT00000035482 1 1 1 83 2 166330807 166330827 TTTATGTTTGTCCGGTGGAG 58 166330743 166330761 GAGCTTCATTCCCTTTGCC 59 NA Rattus norvegicus 81 LOC100911107 ENSRNOG00000048358 ENSRNOT00000070876 2 1 1 80 17 32012023 32012230 TTCCGACTGAACAAGAAAGAC 59 32011963 32011982 ATCAGGAATGTAGCCAAAGG 58 NA Rattus norvegicus 81 Mpnd ENSRNOG00000048282 ENSRNOT00000074075 1 1 1 80 9 11058647 11058932 GTTCCTCTTGGACTTCCAC 58 11058585 11058604 TGATTATTGATGTCCCAGCG 58 NA Rattus norvegicus 81 Olr262 ENSRNOG00000009748 ENSRNOT00000012919 1 1 1 60 1 172615833 172615851 TTATGTGATGCCCAAGTCC 58 172615791 172615809 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad6 ENSRNOG00000009173 ENSRNOT00000012155 3 1 1 110 8 68898703 68953245 TGAATTCTCAGATGCCAGCA 60 68898612 68898630 TCATACACCGCATAGAGGC 59 NA Rattus norvegicus 81 Sntg2 ENSRNOG00000004928 ENSRNOT00000066904 2 1 1 80 6 49218557 49254895 GTGCTAATGTGCATCTTCTGAG 60 49218498 49218516 GAAATGAGGGTGCTTCCCT 60 NA Rattus norvegicus 81 Ass1 ENSRNOG00000008837 ENSRNOT00000012075 1 1 1 80 3 10354933 10358637 GAATACGCAAAGCAACATGG 59 10354872 10354893 GATGTGCATAAGGTTCTCATCC 59 NA Rattus norvegicus 81 Eda2r ENSRNOG00000013018 ENSRNOT00000017429 2 1 1 80 X 66565594 66567132 TCTTCTGAGGTTCAGTGTACC 59 66565534 66565553 AAGTGTGGCTTCCTTAGGAG 60 NA Rattus norvegicus 81 Akr1c12 ENSRNOG00000033010 ENSRNOT00000041925 2 1 1 80 17 69711588 69711608 CTGTGTCAAACTAAACGATGG 58 69709310 69711546 TTACTCTTGGGAACCTCCT 57 NA Rattus norvegicus 81 C1d ENSRNOG00000005982 ENSRNOT00000089875 2 1 1 105 14 100421376 100422190 TTGTTGCAGAAGTTGGACC 59 100422554 100422574 GATTAACTCCTTGAGTTGCCA 58 NA Rattus norvegicus 81 Lypla2 ENSRNOG00000010067 ENSRNOT00000014415 2 1 1 85 5 154317245 154317265 CATGTCAAGTACATCTGTCCC 59 154316657 154316758 ATCAGGTCAAACCAGGAGG 59 NA Rattus norvegicus 81 Lypla2 ENSRNOG00000010067 ENSRNOT00000014415 3 1 1 86 5 154317245 154317265 CATGTCAAGTACATCTGTCCC 59 154316656 154316757 CATCAGGTCAAACCAGGAG 58 NA Rattus norvegicus 81 Zfp157 ENSRNOG00000001323 ENSRNOT00000030757 1 1 1 80 12 18476504 18476522 CTTGAGGTTGGAGCATGGA 60 18468406 18476461 ACTTCAAGAACACCTGGGAG 60 NA Rattus norvegicus 81 Ltbp3 ENSRNOG00000020813 ENSRNOT00000028262 1 1 1 80 1 221113786 221113805 TGATGGAAAGGGCTACACTC 60 221113845 221114118 AATATGCATTCGTCGATGTCAC 60 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 3 2 2 80 5 135413327 135415567 CAGCTAAGTCATCTACAGCCA 60 135415606 135415627 GACGGCTTATTCCAAATCTACC 59 NA Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 1 2 2 80 10 10804458 10805752 TTCACCTGAGCCACTTCTG 60 10804396 10804416 GCCAAGTCCTTTGATCTTACC 59 NA Rattus norvegicus 81 Oxtr ENSRNOG00000005806 ENSRNOT00000007724 3 1 1 103 4 144415240 144415258 TTCATCATCGTACTGGCCT 59 144403614 144415173 ATGAAGGCAGAAGCTTCCT 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978,ENSRNOT00000013333 1 3 3 83 15 60732497 60733220 ATCAGACAGTGATGGACCG 59 60728665 60728683 AGCAGAGTCTTTCCACTCG 59 NA Rattus norvegicus 81 Rgs22 ENSRNOG00000025551 ENSRNOT00000039378 2 1 1 80 7 74860604 74860622 ATCCTGGTGGACAGAAGAC 59 74849823 74860561 AATCTTGGTGCCCAATACAG 58 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366,ENSRNOT00000088169 3 2 2 95 5 74114355 74116524 ACATTCAAAGCGAGCAACC 60 74107867 74107887 GACGTTAGGATGAAACTGAGG 59 NA Rattus norvegicus 81 Dtl ENSRNOG00000004195 ENSRNOT00000005576 2 1 1 80 13 110257171 110257189 TCCTCAGGACGAAATGCTC 60 110252749 110257127 TAATGTGAAGACCACCCGT 59 NA Rattus norvegicus 81 Dtl ENSRNOG00000004195 ENSRNOT00000005576 3 1 1 80 13 110235437 110235457 AGTCTTAGTCCAGATGACCAG 59 110231359 110235396 CCATGGCATAGAAACCTTCC 59 NA Rattus norvegicus 81 Txndc11 ENSRNOG00000002452 ENSRNOT00000003332 2 1 1 80 10 4621780 4624617 GTGAAGCTCACTCTAGAGTC 57 4624660 4624678 ATCACTTCCAGTGAGATGC 57 NA Rattus norvegicus 81 Tuba1b ENSRNOG00000053468 ENSRNOT00000081355 2 1 1 80 7 140616382 140616400 TTCAGTGAGACAGGAGCTG 59 140616189 140616341 GCGAACTTCATCAATAACTGTG 58 NA Rattus norvegicus 81 Tbc1d32 ENSRNOG00000000802 ENSRNOT00000001051 2 1 1 80 20 37536568 37560465 GATGTAAAGCAAGTCAACAGG 58 37527560 37527579 CCCAAACCATTGTAAGTCCA 58 NA Rattus norvegicus 81 Car14 ENSRNOG00000023162 ENSRNOT00000025523 3 1 1 80 2 198011260 198011279 TCTAGGTATGGGAATCTCGG 58 198010604 198011220 CTCTTCCTCCTAATCTTCTGAG 57 NA Rattus norvegicus 81 AABR07061044.1 ENSRNOG00000046592 ENSRNOT00000074206 2 1 1 60 4 103115473 103115492 CTGCTTATCAGCATTGGAGG 59 103115432 103115451 GTACCAGGCTCTGACTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Batf ENSRNOG00000008588 ENSRNOT00000011563 3 1 1 87 6 109562842 109562862 GATTACAACCATGCCTCACAG 59 109562911 109565173 ATCATCGGATGAGTCCTGC 59 NA InUTR Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 1 2 2 80 12 13718208 13718317 CTTCCTGGGTATGGAATCCT 59 13718359 13718378 TCTTTACGGATGTCAACGTC 58 NA Rattus norvegicus 81 Aldh6a1 ENSRNOG00000011419 ENSRNOT00000015545 2 1 1 83 6 108149864 108151900 CCAATGTTAAGCCAAGTATGAC 58 108149802 108149820 CATCCAGGGTTTCTGTCTC 58 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 3 2 3 80 13 76533970 76544173 GGAAAGGTAGAAAGGAGTATGG 58 76533911 76533929 TTCACATGCTCTTGAGCAC 59 NA Rattus norvegicus 81 Arhgef19 ENSRNOG00000047967 ENSRNOT00000067574 3 1 1 80 5 159766126 159766230 ACTAAAGGAGCTGGTGCAG 60 159766271 159766292 TTCTTACTCAGGTGAATGAGCT 59 NA Rattus norvegicus 81 Mrpl43 ENSRNOG00000014890 ENSRNOT00000020020 3 1 1 186 1 264755900 264756030 TGGCCGAATACCTTAACGG 60 264755732 264755750 GTCCGTTTGTTGGTGAAGG 59 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000043917 1 1 2 80 11 60809831 60810592 ATGCCAGAAGTTAACACTACAG 59 60809772 60809792 CTTTGTCAGTGGACTAGAAGG 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000091981 2 2 4 100 20 2505244 2505262 AACTTCAGAAGTGCCTGGA 59 2505325 2509751 TACCAGTCTCTTGAGTTCCC 59 NA Rattus norvegicus 81 Cnst ENSRNOG00000002710 ENSRNOT00000003641 1 1 1 80 13 97894430 97894448 GGAAGAAAGGCTTTCCGAG 59 97894490 97898069 TTTCAATCTCTGGCTCTTTGG 59 NA Rattus norvegicus 81 Rn60_7_1414.6 ENSRNOG00000057014 ENSRNOT00000084907 1 1 1 60 7 143511589 143511607 AGGAAGAACGATGTAGCCC 59 143511547 143511566 CACTCCAGATCCCATAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.1 ENSRNOG00000051042 ENSRNOT00000075889 2 1 1 60 13 78907918 78907937 TGAGTGCATCCAATATCTCC 57 78907877 78907896 GATTGCAGCATGATCTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 2 2 2 80 6 80078310 80078328 ATACAGAGCGGAGACAGAG 58 80074106 80078267 CCAAATTTCTGACACAGTCG 57 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 1 2 2 80 5 160031934 160033816 TGGGAATAAGATTAAGGTGGAC 58 160031875 160031893 TCTTGACCAGACTTCTCCA 58 NA Rattus norvegicus 81 Nkap ENSRNOG00000053813 ENSRNOT00000089883 1 1 1 80 X 123765466 123765576 ATCGATCAAAGACAGAAGAACC 59 123765616 123765635 AGGGCTTATCATCTTGGGAG 59 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 1 2 2 80 18 64053897 64057243 GCCATGTTTAAGATCGCCA 59 64053835 64053854 ACTTCGCAGATACTTCACAG 58 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 3 2 2 80 18 64053900 64057248 CCTACGCCATGTTTAAGATCG 59 64053840 64053860 GCAGATACTTCACAGTGAAGG 59 NA Rattus norvegicus 81 LOC499565 ENSRNOG00000031320 ENSRNOT00000047881 3 1 1 80 2 87957492 87967314 CCAAACAGTAGTTCAGCTTGG 60 87967355 87967374 TGTAGTCTCCCTGCCTAGAG 60 NA Rattus norvegicus 81 Ankrd45 ENSRNOG00000002890 ENSRNOT00000003857 2 1 1 87 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983098 78983116 TCAACATCCAGTTCCACCA 59 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100,ENSRNOT00000044257 1 2 2 80 1 100329141 100329599 GTCCACAAGAAAGCATCCC 59 100329641 100329661 CTCTGAGGTCATAGACTTGGA 58 NA Rattus norvegicus 81 AABR07061048.1 ENSRNOG00000049501 ENSRNOT00000073076 3 1 1 60 4 103144980 103145000 CTATCTCTTGCCGGTCTAGTC 60 103144940 103144960 CAATGCAAGTAGGTGTTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2n ENSRNOG00000058053 ENSRNOT00000089874 1 1 1 84 7 36638814 36638836 CCTAATCCAGATGATCCATTAGC 59 36638878 36639468 ATGCTCTTGCTGTTTCTATGG 59 NA Rattus norvegicus 81 RGD1562409 ENSRNOG00000029423 ENSRNOT00000047713 2 1 1 89 3 59166128 59166346 TAAAGCCCTCTTCCAAGGG 59 59166057 59166077 CAAACAAAGGATTGACCACCT 59 NA Rattus norvegicus 81 Olr107 ENSRNOG00000015901 ENSRNOT00000021282 2 1 1 60 1 168623740 168623759 CGTCTATGGATTGGTCTGTG 58 168623779 168623800 AACTAAGATGAAGATTGCGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kb15 ENSRNOG00000009105 ENSRNOT00000038242 2 1 1 80 7 143211820 143212665 GGTACCAGACCAAGTATGAGG 60 143211760 143211781 AGATCTCCATCTTGGTAGTACG 59 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 1 3 3 80 X 70333308 70333990 CAAGCCAAAGTATTTGGAACTG 59 70334027 70334049 GTACTTCTGATGCTGTTCATACC 59 NA Rattus norvegicus 81 Akr1cl ENSRNOG00000021735 ENSRNOT00000058312 1 1 1 80 17 69855310 69856359 CTATGAAGCCTGGAGAGGA 58 69855248 69855268 AAGTATCACGAATGTCCACTG 58 NA Rattus norvegicus 81 Klf7 ENSRNOG00000046242 ENSRNOT00000072007 2 1 1 88 9 70787339 70787357 GCTGTCAGTTTAACGGGTG 59 70749449 70787288 TGTAAGGCTTCTCACCTGTG 60 NA InUTR Rattus norvegicus 81 M6pr ENSRNOG00000014992 ENSRNOT00000020364 2 1 1 81 X 88315132 88315150 TTGAGATGGATAGCAGCCT 58 88314339 88315090 GATGCAAATATGACAAGGAGGA 59 NA Rattus norvegicus 81 Kazn ENSRNOG00000014322 ENSRNOT00000019447 1 1 1 80 5 160675553 160677161 CCTATTGTACAGTCACTAGAGGA 59 160675495 160675513 AGAGATGGAGCCAAATCCC 59 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303,ENSRNOT00000075569 3 2 2 94 2 195678742 195678761 TCACCATACGCCTATTACCT 58 195678405 195678687 TCCTTGTAAGTGATGCTTCTG 58 NA Rattus norvegicus 81 Slc39a11 ENSRNOG00000031213 ENSRNOT00000042156 2 1 1 80 10 101983503 101983523 AGAAGTCTGATCTCAAGGACC 59 101891694 101983463 CATTCTCACGCTTGTCTATCC 59 NA Rattus norvegicus 81 Triqk ENSRNOG00000039924 ENSRNOT00000061328 2 1 1 93 5 26559819 26565288 TCGGCATAAAGGAGGTTGG 60 26565344 26565363 ATATTCGTGGACAGTCGGAG 59 NA Rattus norvegicus 81 Dennd6a ENSRNOG00000011636 ENSRNOT00000016233 1 1 1 80 16 2289451 2289469 CAGCATTGCAAACTCACTG 58 2289607 2297917 TCCTAGACAACCTGAATTTGAG 58 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 3 2 2 81 14 16378605 16378626 GGAGATGAGACAGATGTTTGTC 59 16377756 16378566 CTTCTCATGAAGCTCTTTCTCC 59 NA Rattus norvegicus 81 Pou4f2 ENSRNOG00000012167 ENSRNOT00000016422 1 1 1 60 19 33160693 33160711 AGAGCTTGTCTTCCAACCC 60 33161167 33161185 CCAGCAGACTCTCATCCAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07065113.1 ENSRNOG00000050817 ENSRNOT00000072451 2 1 1 109 6 110210118 110210136 GAAGGTACCACCTGTTCTG 58 110210026 110210046 GGAAGTCAGTATGACCAAGG 58 NA Rattus norvegicus 81 Arl13a ENSRNOG00000055454 ENSRNOT00000085068 1 1 1 80 X 105025710 105025730 AGTATGAGCAACATCTCAAGC 59 105025770 105035139 TCCTCTGGTAGATAAGCTGTC 59 NA Rattus norvegicus 81 Mob2 ENSRNOG00000020044 ENSRNOT00000027195 3 1 1 99 1 214962094 214971637 GTGCTCAGGAAGTCTAAAGC 59 214962014 214962032 CAGTGATCCTGGACTTGGT 59 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 2 1 1 60 1 81595362 81595383 CATTGAATCTGCACCTAACGAG 60 81594285 81595344 TTCACCTATATCTACGAGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 2 3 3 89 7 123134430 123134449 ATCCTCACAGTGAAAGGTGG 60 123134501 123135291 AATTGTTGCCATGCCAGTG 60 NA Rattus norvegicus 81 Pmm2 ENSRNOG00000002615 ENSRNOT00000003542 2 1 1 80 10 7071514 7071534 GACAGAAGACCAAGATTGGAG 59 7068921 7071473 TCTCAACCACATCATTTCCC 58 NA Rattus norvegicus 81 Slc22a20 ENSRNOG00000022673 ENSRNOT00000065532 1 1 1 80 1 221343427 221343532 TCTACTATTGTGATGGAGTGGG 59 221343368 221343386 CCCGGACATGTAGATGGAC 60 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 2 2 2 80 2 232151663 232151682 CCAGAAGACGACTTTGAAGC 59 232151415 232151625 ATCAGATGAGAGTCTACTACTTCG 59 NA Rattus norvegicus 81 Rab27b ENSRNOG00000012176 ENSRNOT00000016369 1 1 1 91 18 68494058 68494076 TCTTCAGAGATGCCATGGG 59 68490579 68494003 CTGCAGTTGACTCATCCAG 58 NA Rattus norvegicus 81 Mien1 ENSRNOG00000007227 ENSRNOT00000009485 2 1 1 80 10 86392430 86392449 AGATTGAGATCAATGGGCAG 58 86392280 86392390 TAGCTTCCATGAGATCTTTCTC 58 NA Rattus norvegicus 81 Tp53bp1 ENSRNOG00000013837 ENSRNOT00000019025 1 1 1 80 3 113222083 113222103 AAGAGTTGGAAGAGGAGAAGG 59 113219110 113222042 AAGCAGAATCTTCAGCAAGG 59 NA Rattus norvegicus 81 Nat9 ENSRNOG00000003264 ENSRNOT00000004372 1 1 1 88 10 103733122 103733140 GTCTGACCAAGTTTGAGGC 59 103732588 103733072 CATAGCCACCTGCTTAAAGTG 59 NA Rattus norvegicus 81 Malsu1 ENSRNOG00000009035 ENSRNOT00000011970 2 1 1 80 4 78736558 78736578 GTAATTGGTAGTGGGACTTCC 58 78736618 78742435 GCACTTCAGGTGTTTATACGT 59 NA Rattus norvegicus 81 LOC680646 ENSRNOG00000022450 ENSRNOT00000036337 1 1 1 80 6 58388538 58388561 CTATAATGGTCATGTAGGTCTTGG 59 58388599 58388643 TGCATCTTCACCCATAGACC 60 NA Rattus norvegicus 81 Bach2 ENSRNOG00000006170 ENSRNOT00000065882 3 1 1 82 5 47789518 47789536 TTCCAGTGACGAATCTGGA 58 47789582 47801521 GAAGTTTAACCTCCTGGCC 58 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000017757 ENSRNOT00000023948 3 1 1 85 9 82070930 82070948 TAAGCTCAGTGCCTCAGAC 59 82070998 82071123 TTCCTTTAGAATGATGCTGGGA 60 NA Rattus norvegicus 81 Etaa1l1 ENSRNOG00000006185 ENSRNOT00000008135 3 1 1 60 14 102292388 102292408 GAAATGCTTGAACTCTTTCCC 58 102292348 102292367 TACAAACTGCCTTCTGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahrr ENSRNOG00000014721 ENSRNOT00000019806 1 1 1 80 1 31683177 31683195 TACTCGGCCTTCTTGACAC 59 31683239 31689108 CTGCATAGTCAGGAAGCCA 60 NA Rattus norvegicus 81 Six1 ENSRNOG00000022777 ENSRNOT00000034338 1 1 1 98 6 95931062 95933129 AAGGAAAGGGAGAACACCG 60 95930982 95931000 TTCTGAGCTGGACATGAGC 60 NA Rattus norvegicus 81 RGD1559999 ENSRNOG00000048778 ENSRNOT00000051054 2 1 1 86 14 15707507 15708297 TGAATCAAGTCCTAGGGTGC 60 15707440 15707460 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Grxcr2 ENSRNOG00000039325 ENSRNOT00000060260 2 1 1 142 18 36314970 36321997 GAATGACCATAAGCCTCCG 58 36314846 36314864 ACTCTTCTTCAGCCACCTC 59 NA Rattus norvegicus 81 Utp3 ENSRNOG00000003599 ENSRNOT00000004787 2 1 1 60 14 21155055 21155076 TATGATACAGACTACGGTTCCA 58 21155016 21155036 CCTCTTCTACTTCTTGCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f6 ENSRNOG00000004449 ENSRNOT00000060499 1 1 1 80 6 42103909 42103928 CGAACAGATTGTCATTGCAG 58 42103968 42106505 ACTGTGATAGAATCTTCTCTGG 57 NA Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 1 2 2 80 4 157453344 157453582 ATCCCATGTTCCTGATGGAC 60 157453624 157453643 GGCTATATCCAAAGCCACCT 60 NA Rattus norvegicus 81 AABR07049579.2 ENSRNOG00000050523 ENSRNOT00000072754 1 1 1 60 5 129380967 129380991 CAAAGACAGATGAGTGTAGTTATGG 60 129381006 129381027 CCATTATAGACACTGCTTTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nono ENSRNOG00000003689 ENSRNOT00000004911 2 1 1 80 X 71337247 71338079 GAGGCAGGATTTGATGAGAC 59 71338121 71338140 TGCTTTCGTTTCTGAACCTC 59 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154,ENSRNOT00000064483 3 2 2 80 14 92361753 92361771 ACCCAGTAAATGCTAGGCA 59 92344374 92361709 GCAAGGGAACCTTTCTGAG 59 NA Rattus norvegicus 81 Fpr-rs6 ENSRNOG00000048014 ENSRNOT00000044825 2 1 1 60 1 86262602 86262623 CAGAAAGAAACTGATCCACTCC 59 86262563 86262581 TGAATCTTCCCTCAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep41 ENSRNOG00000010950 ENSRNOT00000014621 2 1 1 80 4 57979418 57979436 TTCAAGTTGCTTCCCTGTC 58 57974302 57979375 TTGCAGAATCACTGTCTTCG 59 NA Rattus norvegicus 81 Lamp2 ENSRNOG00000000164 ENSRNOT00000000177 2 1 1 80 X 124745155 124750129 TGCTGTACCTAAAGGAATCC 57 124745094 124745115 CTACTGCACTTAAAGATGACAC 57 NA Rattus norvegicus 81 Gdi2 ENSRNOG00000018091 ENSRNOT00000024952 2 1 1 80 17 70309201 70309220 GAAGTTTGATTTGGGCCAGG 60 70308620 70309163 TGGTCTAAGTAGTCATCTGTTCTG 60 NA Rattus norvegicus 81 Hoxc10 ENSRNOG00000016149 ENSRNOT00000021647 3 1 1 97 7 144578320 144581697 AAGCTAAAGAGGAGATAAAGGC 58 144581753 144581773 CGTCTGGTGTTTAGTATAGGG 58 NA Rattus norvegicus 81 Rhox4g ENSRNOG00000027994 ENSRNOT00000034056 1 1 1 80 X 124562839 124566272 CAGAAGAAAGAAGACATCTGGC 59 124561463 124561483 GTTCTCGTCTTCCCTTAAACC 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632,ENSRNOT00000051754 1 2 2 80 7 117470993 117471479 TTTCAGATATCTAAGAGCCTGGG 60 117471519 117471537 TTCAAGCTGAACCTCCAGG 60 NA Rattus norvegicus 81 Fam126b ENSRNOG00000025079 ENSRNOT00000037660 2 1 1 80 9 65423735 65423756 GTGGTCGAATCGTATTAGATCC 59 65423197 65423697 CCCACTGTCCATTATACATAGC 59 NA Rattus norvegicus 81 Obp2a ENSRNOG00000042407 ENSRNOT00000064745 1 1 1 80 3 2910819 2911084 CACAGTTACAGTCTGGAAGGA 60 2911123 2911144 CTGTATATGCCAGGTTCTTTCG 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 3 2 2 85 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019871 77019892 ATAGCTGAGTTTCTGTTGACTC 58 NA Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671,ENSRNOT00000075775 2 2 2 80 12 2905116 2905134 CATCACTGTGCTGAAGCTC 59 2905177 2906618 AGAAACTCAGTGCCTTTGAC 59 NA Rattus norvegicus 81 Avpr1b ENSRNOG00000049261 ENSRNOT00000074204 2 1 1 111 13 48399617 48399636 AAGATGACCTTTGTCATCGT 57 48390825 48399546 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748,ENSRNOT00000034041 2 2 2 80 2 27246419 27252082 ACTGACAAGCAAGGAAAGAC 59 27246358 27246377 CGCTTTGATGAGCATATCCA 59 NA Rattus norvegicus 81 LOC365828 ENSRNOG00000047434 ENSRNOT00000074913 3 1 1 60 2 178868525 178868546 AAAGACTGGTCATCCTAGCC 59 178868565 178868587 ATATCCACAGGAATCACTGTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Mrc2 ENSRNOG00000006548 ENSRNOT00000055137 2 1 1 80 10 93573873 93576616 TCCTCAACAAGTGTTTCCGA 60 93576659 93576677 GTTCACAGGAGAACTGTGC 59 NA Rattus norvegicus 81 Vps11 ENSRNOG00000010733 ENSRNOT00000065456 2 1 1 80 8 48683291 48683310 AGACTGCAAGGAGTATGTGG 60 48683142 48683248 GTCTGTACCACCAGGAGAG 59 NA Rattus norvegicus 81 Mir15b ENSRNOG00000035483 ENSRNOT00000053606 3 1 1 68 2 165605929 165605950 CCTTAAAGTACTGTAGCAGCAC 59 165605978 165605997 GCAGCAAATAATGATTCGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cda ENSRNOG00000049700 ENSRNOT00000075128 3 1 1 92 5 156781198 156781216 AAGAAGTCAGCCTACTGCC 59 156768233 156781142 TTCTACGTTGCACCCAGAG 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 2 2 2 80 8 52807928 52807949 GGCAGAGTATGAATTTCTGTCC 59 52806560 52807887 GCATGAACTGAGTTCCCTG 59 NA Rattus norvegicus 81 RGD1560034 ENSRNOG00000038943 ENSRNOT00000059532 1 1 1 80 7 27782198 27786394 CAAGGGAGATTCTGGTCCTG 60 27786437 27786455 GGCTGAGAGGAGTTCTGAC 60 NA Rattus norvegicus 81 RGD1564999 ENSRNOG00000046403 ENSRNOT00000044132 3 1 1 81 17 57763363 57764383 TATAGAATGTCTCCAGGTCGG 59 57763302 57763320 CTGCAGCTGGTGTTTATCG 59 NA Rattus norvegicus 81 Ucma ENSRNOG00000017987 ENSRNOT00000066850 1 1 1 80 17 77256554 77256574 CTTCGGAGGGAGTATTATGAG 57 77252532 77256513 CCTTTCTTCCTGCTCATCTC 58 NA Rattus norvegicus 81 Pinlyp ENSRNOG00000019862 ENSRNOT00000026946 3 1 1 100 1 81406857 81407123 GCAGGCTGGTATTATCAACAC 60 81406777 81406796 GATAGGAAGCAGAAGGGACC 60 NA Rattus norvegicus 81 Ice1 ENSRNOG00000023053 ENSRNOT00000061873 1 1 1 80 1 35316119 35316137 AGGATTTCCAACTGCTGTG 58 35316178 35318782 CATGGGATATCTTCATCCTGAG 58 NA Rattus norvegicus 81 Smarcd1 ENSRNOG00000061572 ENSRNOT00000081195 2 1 1 80 7 141361089 141362266 CACGTCATCAGTGTTGACC 59 141362307 141362328 CTTCAAAGTGTCATCCACTTCC 60 NA Rattus norvegicus 81 Olr629 ENSRNOG00000047271 ENSRNOT00000044692 1 1 1 60 3 76695297 76695318 CCAGAAGATAAAGTGTTTGCTC 58 76695258 76695276 TCAGAGGGTTGAACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr1b ENSRNOG00000016789 ENSRNOT00000076692 3 1 1 85 9 43269281 43269462 AAATCAAGATCTCTGCTCCTC 58 43269059 43269078 CTTCTTGAAGGTGTCCAGTG 59 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 3 2 2 80 1 31723862 31725708 GATCTAGAGCAACATCTGAATGAG 59 31725746 31725765 GGTGACACAGATGATGTCCA 60 NA Rattus norvegicus 81 Vwa5b1 ENSRNOG00000016553 ENSRNOT00000022282 1 1 1 80 5 157027506 157029441 ATCTACAATGAGGAGAACTTGG 58 157027447 157027465 GAATATGTTGGTGCCTCCC 58 NA Rattus norvegicus 81 Vwa5b1 ENSRNOG00000016553 ENSRNOT00000022282 2 1 1 80 5 157005552 157005572 TTTCTCAGCAAATCATTGCCC 60 157004087 157005510 CAGAGACACCAGTGGTACG 60 NA Rattus norvegicus 81 RT1-O1 ENSRNOG00000032664 ENSRNOT00000048036 3 1 1 152 20 3162166 3162184 ACATGGAGCTTGTGGAGAC 60 3162300 3162449 GATGGAGGAGCCATCTCAG 59 NA Rattus norvegicus 81 Serpina7 ENSRNOG00000011081 ENSRNOT00000014739 2 1 1 82 X 110228123 110228804 CATTTATTGCAGAAAGGATGGG 58 110228062 110228081 TGAAGTGTACTTCCAAGGTC 57 NA Rattus norvegicus 81 Serpina7 ENSRNOG00000011081 ENSRNOT00000014739 3 1 1 82 X 110228122 110228801 TTATTGCAGAAAGGATGGGT 57 110228059 110228079 TTCTGAAGTGTACTTCCAAGG 58 NA Rattus norvegicus 81 Calhm3 ENSRNOG00000026086 ENSRNOT00000036202 1 1 1 81 1 266934064 266934082 TGTGTTGATGGTGGAGGAG 59 266932316 266934019 AGAGGAGCACATGTACCTG 59 NA Rattus norvegicus 81 Rpn1 ENSRNOG00000046345 ENSRNOT00000073429 1 1 1 80 4 120013775 120013794 ACGTGTTTGATGAGCAAGTG 60 120013835 120015102 TGTCTACCTGGATGTTCTTGG 60 NA Rattus norvegicus 81 Ifngr1 ENSRNOG00000012074 ENSRNOT00000016286 3 1 1 81 1 15074393 15074414 GTGACGGAAATACCTGTTACAC 59 15074453 15076891 TGTTCTGTATGTAGGATCTCCC 59 NA Rattus norvegicus 81 LOC100910858 ENSRNOG00000050271 ENSRNOT00000041690 2 1 1 60 3 77337898 77337918 GGACATTTGCTATACCTCCTG 58 77337938 77337958 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000064792,ENSRNOT00000037399 3 2 2 80 3 11406511 11406532 GACAGTAACTCAGAATTTCGGC 60 11406570 11406933 GTTCTTGGCTTTGTATTTCTGC 59 NA Rattus norvegicus 81 Pycr1 ENSRNOG00000036682 ENSRNOT00000054949 3 1 1 121 10 109820084 109820102 GAAGATGGCAAGCTTGTGG 60 109819873 109819999 GCTGTGAAAGCATAGGCAG 59 NA Rattus norvegicus 81 Cyp3a2 ENSRNOG00000000978 ENSRNOT00000076813 2 1 1 96 12 11677301 11677689 CTCTACCGACTTGGAACCC 60 11677223 11677242 AGTAATTCAGCACAGTGCCT 60 NA Rattus norvegicus 81 Pigm ENSRNOG00000007735 ENSRNOT00000010551 1 1 1 60 13 90759444 90759463 TTTCTACGGTGTCTTTCAGG 58 90759486 90759504 GTGGTAGTCTATGTCGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 2 2 2 119 1 266401976 266409952 ATGAACTCTGGTGGTTCTGG 60 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 3 3 3 80 15 23830043 23840163 GGTAGTGGTATGAAAGATGTTCC 59 23840202 23840221 AGTCATCTGTGAGAAGAGCG 60 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679,ENSRNOT00000035317 1 2 2 80 18 73611302 73611321 CTGTTCGAAAGGTGGAAGAG 59 73611364 73615669 CAAGGTGGACTTGAAGAGG 58 NA Rattus norvegicus 81 Lgsn ENSRNOG00000012205 ENSRNOT00000016316 1 1 1 85 9 37477086 37477105 CCAAGATCAGATACCAGTGG 58 37477152 37483653 GAGTGTGATCAGTATTCGGG 58 NA Rattus norvegicus 81 Esrrb ENSRNOG00000010259 ENSRNOT00000013867 3 1 1 80 6 110452657 110452676 AGGTACAAGAAGCTCAAGGT 59 110452716 110455672 GTACATTGAATCTGAGTTGGCA 59 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 2 2 2 82 1 222869618 222869636 GTACAGGCTGACCAGTGAG 60 222869681 222876955 CATCTCTGACCTGGTCACTC 60 NA Rattus norvegicus 81 Rn60_12_0168.1 ENSRNOG00000024366 ENSRNOT00000031085 2 1 1 60 12 14736439 14736457 ATGACCCTCACGATGTCTG 59 14736480 14736499 ACAGGATGTCTGATTCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 1 2 2 80 8 5994195 5994413 TGTAACGGTTTCAGCAACC 59 5994455 5994475 ACTATACCACCAACAAAGCTG 58 NA Rattus norvegicus 81 Ltv1 ENSRNOG00000015217 ENSRNOT00000020453 3 1 1 80 1 7324547 7324567 AGAAGGAAGAGACCGTTACTG 59 7324203 7324507 TGGAGTATGTACTGCAGATGG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Capza3 ENSRNOG00000008727 ENSRNOT00000011555 1 1 1 60 4 174182209 174182229 ATTGAAGACCACAGCTATGAC 58 174182249 174182269 TCCACTTAGACTTCCAAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 2 3 4 86 2 250224121 250224140 AACATGATAGACCCACAGCT 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Anapc13 ENSRNOG00000008459 ENSRNOT00000011203 3 1 1 81 8 111111126 111115343 TAGCGATTCCACTGAGTGAG 59 111115384 111115405 TTCATCTCCTGTTCTTTCACAG 58 NA Rattus norvegicus 81 Prr20e ENSRNOG00000026675 ENSRNOT00000039058 1 1 1 80 4 121046321 121052114 CCATCAAGACTCCGATGAG 57 121052157 121052176 GACTCATCTACTTCCACTGG 57 NA Rattus norvegicus 81 Eif2s2 ENSRNOG00000017447 ENSRNOT00000023786 1 1 1 80 3 150397201 150397686 ATATGAGGAGTTGCTGAACC 57 150397140 150397158 AATTTCCTCTTCTCGCCAG 58 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530,ENSRNOT00000027677 2 2 2 80 1 82104333 82104351 ATTATGCGTAAGCTGGACC 58 82104114 82104290 CAGCTCATCTTTCTTCTCCC 58 NA Rattus norvegicus 81 Map2k3 ENSRNOG00000006612 ENSRNOT00000008679 1 1 1 80 10 47200585 47200603 TTGTGGACTTCACAAGCCA 60 47201991 47202572 AGAACGGGTGTTCCATCAG 60 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 2 1 1 70 14 115386446 115391517 CAAGCCTGGAAGAGTTGTG 59 115384910 115384929 GTAGTTTGTAAGCAACACCC 57 NA DesignNoJunction Rattus norvegicus 81 AABR07032657.1 ENSRNOG00000049921 ENSRNOT00000074465 2 1 1 80 18 76317236 76317293 CTTATTGACGTCATAAAGCGAC 58 76317333 76317352 GCATGTTTCATAGCTCTCCC 59 NA Rattus norvegicus 81 Olr518 ENSRNOG00000029222 ENSRNOT00000041668 1 1 1 60 3 74370838 74370857 TGTGACATTCCTCCATTGCT 60 74370797 74370818 GCAGAAGCTGGTTTATATTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb19 ENSRNOG00000036898 ENSRNOT00000055409 3 1 1 121 3 148035216 148042474 GTTTCCAGTCTACAGGTGC 58 148042558 148042577 TTGCAATACAGCAGTAGTCC 58 NA Rattus norvegicus 81 Gna15 ENSRNOG00000005378 ENSRNOT00000007202 2 1 1 80 7 11068541 11068559 GTGATTGCCCTCATCTACC 58 11068602 11069427 CTTCATACGGTTCTCCTGAC 58 NA Rattus norvegicus 81 Spata3 ENSRNOG00000017540 ENSRNOT00000023581 1 1 1 166 9 93030903 93034129 CAAACGGATGATCGGAGAC 58 93034259 93034277 TGAAATGGAATTCCTGCGG 59 NA InUTR Rattus norvegicus 81 LOC691056 ENSRNOG00000021048 ENSRNOT00000067679 1 1 1 130 1 101788071 101789396 CTCTTCGACCAGGAGACTC 59 101789490 101789508 TTGGGAAACCCATCTCCTG 59 NA Rattus norvegicus 81 RGD1564319 ENSRNOG00000038050 ENSRNOT00000057901 2 1 1 60 3 65672238 65672259 AACTTAGCATTTGTGAAGCCTG 60 65672274 65672298 CCATCTGTATAAGATAGTTCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 3 3 3 105 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613717 80614133 CCTCCATCAGTACCGTCAG 59 NA Rattus norvegicus 81 Dcaf5 ENSRNOG00000004556 ENSRNOT00000006005 1 1 1 80 6 103520983 103527585 GGAGAAGATTATCAAGATCTGGAG 58 103520926 103520946 GAATCATCTTCAATCCGACCA 58 NA Rattus norvegicus 81 Bcl2l12 ENSRNOG00000020486 ENSRNOT00000027777 1 1 1 99 1 100992132 100992150 CGGGAAAGTTGAACTTCGG 59 100991485 100992069 CATGGAGGTACCTGGATCG 59 NA InUTR Rattus norvegicus 81 Ahsa1 ENSRNOG00000048981 ENSRNOT00000075425 1 1 1 80 6 111301552 111302808 AAGTGTGCAAGGCTAAGTG 58 111302852 111302870 GGGTGATCTTACAAGTGGG 58 NA Rattus norvegicus 81 Acsl3 ENSRNOG00000014718 ENSRNOT00000020161 2 1 1 80 9 84576969 84576988 GGACTGAATGAGACAGAGGT 59 84577028 84578583 CAAAGAGACGATATCCTTCAGC 59 NA Rattus norvegicus 81 LOC689821 ENSRNOG00000042277 ENSRNOT00000067365 3 1 1 60 14 105069514 105069532 ATGGACATCAACACTGCTC 58 105069472 105069491 CTAGGCTGTCATGGATGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs7 ENSRNOG00000021984 ENSRNOT00000065041 3 1 1 80 13 93121648 93121666 TGAAAGACCCAGTTGGGAG 59 93117105 93121607 CCAACCAGAACCTTAAGTTCTC 59 NA Rattus norvegicus 81 Asic2 ENSRNOG00000058308 ENSRNOT00000086961 1 1 1 80 10 68249743 68255530 CCTCCTCTCATATTTAAGAACAACC 59 68249204 68249222 TCTTCTTTGCCAAGCAGGT 60 NA Rattus norvegicus 81 Celf5 ENSRNOG00000004695 ENSRNOT00000061219 3 1 1 95 7 11116348 11116366 CTGACCCAGATGTTCCTCC 60 11116425 11116820 GCTCACGAATCCGAAACAC 60 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000077689,ENSRNOT00000020733 1 2 2 93 10 14252823 14253024 AAGTGCATAGGAGTGGCTG 60 14253080 14253099 GAATGACCTTCATGCTGCTC 59 NA Rattus norvegicus 81 Mtg1 ENSRNOG00000018860 ENSRNOT00000025574 1 1 1 80 1 212615393 212615772 TCCAGAATCCAGGTATGTGAG 59 212615813 212615832 CACACTTTGAATCCGAGGAG 59 NA Rattus norvegicus 81 Kctd2 ENSRNOG00000023764 ENSRNOT00000067838 2 1 1 80 10 103980413 103980432 TGTCAAGAGGAAGAGCTCAC 60 103980473 103982394 GGAGCCAATGCTGATTAACTG 60 NA Rattus norvegicus 81 Cela2a ENSRNOG00000013628 ENSRNOT00000018349 3 1 1 91 5 160382214 160382232 TTTCCTCTGGAAAGTGGCA 59 160381734 160382162 CCTAGAGTTGCTGATACAATGG 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 1 2 2 80 7 123262391 123264947 TATGAGCATCCAGTGTATCCAG 60 123264987 123265006 TAGAACACCACTGCCAAGAG 60 NA Rattus norvegicus 81 Cyba ENSRNOG00000013014 ENSRNOT00000017564 2 1 1 82 19 55252348 55252366 AGTGCTCATCTGTCTGCTG 60 55252095 55252303 TCAGGTACTTCTGTCCACAC 59 NA Rattus norvegicus 81 Polr3a ENSRNOG00000010008 ENSRNOT00000013501 1 1 1 80 16 739516 739674 AATACTAAAGCCTGTCACCC 57 739455 739473 CTCACTGGATTGTCGTCAC 58 NA Rattus norvegicus 81 Tex26 ENSRNOG00000000905 ENSRNOT00000061246 3 1 1 80 12 6690103 6697514 TTTAATACGTCCAAAGAGCACC 59 6690044 6690065 TGGTATTGGGTTTCATTCAGGA 60 NA Rattus norvegicus 81 Itgb3 ENSRNOG00000048449 ENSRNOT00000073350 1 1 1 80 10 92775989 92778280 AAAGAACTGACGGATACTGG 57 92778322 92778341 GTACTGGAATCTGACGACAC 58 NA Rattus norvegicus 81 Skint8 ENSRNOG00000037680 ENSRNOT00000057169 1 1 1 80 5 131895110 131896429 TCAATGTGACAGCAGTTGG 58 131896470 131896491 AATTACACTCCACTATGACTCC 57 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 1 2 2 91 1 204761787 204761805 GAAGATCGGTGTGAAACGG 59 204718391 204761732 AGGTCTGACAGTTCTGTGC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000077632 1 1 5 74 20 3419357 3419375 ACTACTTTCCCTGTCAGCG 59 3417153 3417171 CCAGTCAATCACCTGAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Kdm8 ENSRNOG00000015180 ENSRNOT00000020388 1 1 1 80 1 196849212 196849232 CCACAAATACATTCTGAGCGA 59 196849655 196851919 TTCAACTCTGGGATCTGGTC 59 NA Rattus norvegicus 81 March1 ENSRNOG00000026310 ENSRNOT00000032289 2 1 1 83 16 25001957 25014626 TAACGACAATGGTGTGCTG 59 25001892 25001910 ATGAAGACGAGACCTCCTG 59 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000019724 2 1 2 88 9 84412638 84418024 TGATCTACACTGTTGCTGC 58 84418076 84418094 CTTCTCAGCAGACACTGAG 58 NA Rattus norvegicus 81 Rufy4 ENSRNOG00000032991 ENSRNOT00000083595 3 1 1 80 9 81414888 81414907 TGAGAAGGAGCTTGAAGGAC 60 81414949 81420180 TGGTCCTTCTCCTGAATCAG 59 NA Rattus norvegicus 81 Gata3 ENSRNOG00000019336 ENSRNOT00000026187 1 1 1 64 17 72445297 72449867 ACTCCACAATATTAACAGACCC 58 72449892 72449910 TCTTACGGTTTCGGGTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ccnb1ip1 ENSRNOG00000026056 ENSRNOT00000029488,ENSRNOT00000082139 1 2 2 80 15 27720958 27722468 TCCCATCAGGGAATAGCTC 58 27720896 27720916 ACTGAACATCTTCATCTCCAC 58 NA Rattus norvegicus 81 Fbll1 ENSRNOG00000015303 ENSRNOT00000020554 1 1 1 60 10 20621353 20621372 ATTTCCATCAAGGCCAACTG 59 20621312 20621330 CTGAAGCAAACACAGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctrl ENSRNOG00000019353 ENSRNOT00000026361 1 1 1 80 19 37906020 37906121 CTCCTCATGTCAGGGTGAC 60 37905958 37905980 CAGGAGACAATACCAATAAGCAC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762,ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 2 10 10 80 7 117246916 117247149 GCCTACTTCCAGTTCTTCTC 58 117246855 117246873 GTACTTCCTGCGTAACGTC 58 NA Rattus norvegicus 81 Zbtb37 ENSRNOG00000026907 ENSRNOT00000039082 1 1 1 80 13 78847225 78849153 GGTCGACAGATTTAGTCCC 57 78847163 78847181 ATTCTCCCAGGAGACTCAC 58 NA Rattus norvegicus 81 LOC100910887 ENSRNOG00000050926 ENSRNOT00000072979 2 1 1 60 13 9480121 9480141 ATCATTCTGTTGACTCTGCTG 59 9480160 9480181 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa8 ENSRNOG00000049407 ENSRNOT00000070937 3 1 1 84 7 123441708 123441726 ATCCTTGGGTAACTGCGTC 60 123441100 123441661 GAGACGTTTCTTGTCTGTGC 60 NA Rattus norvegicus 81 Olr658 ENSRNOG00000049836 ENSRNOT00000007996 3 1 1 60 3 77126703 77126724 CTTTACTACTCATGGTGCTCAG 59 77126664 77126685 AAATAGTGGTTGATGTGGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hs6st2 ENSRNOG00000030880 ENSRNOT00000040165 3 1 1 80 X 138714264 138714284 CTTCAAACTTCAACTCAGGTG 58 138678485 138714223 AATGGAAGTTCTTCCCACTC 58 NA Rattus norvegicus 81 Lsp1 ENSRNOG00000020300 ENSRNOT00000054864 2 1 1 80 1 215658331 215658482 CTCATCCACCATCAAGAGCA 60 215658524 215658543 AGCACTTTCTCGTACTTCCC 60 NA Rattus norvegicus 81 Skap2 ENSRNOG00000012228 ENSRNOT00000016608 2 1 1 80 4 81952191 81959515 TCAAGACAAAGGTGATGCC 58 81952129 81952148 GAGGCTAAGGAAATCGTGTC 59 NA Rattus norvegicus 81 Cdk9 ENSRNOG00000022586 ENSRNOT00000032893 1 1 1 80 3 11744382 11744511 CAGGAACAAGATCCTGCAC 59 11744320 11744339 AAATCTGCCAGCTTTAGGAC 58 NA Rattus norvegicus 81 Olr522 ENSRNOG00000049234 ENSRNOT00000047747 3 1 1 60 3 74255895 74255919 GTCTAGATATTCAACTTCACACTCC 59 74255859 74255877 TCAATGCAAGACAAGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl9b ENSRNOG00000026033 ENSRNOT00000031286 1 1 1 60 8 4086118 4086136 CCAGCCTAAGAGACGAACC 60 4086157 4086178 TGCCTCACCTATAAACATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr608 ENSRNOG00000005950 ENSRNOT00000007796 1 1 1 60 3 76278541 76278562 TGGACCTAATGTCATCAATCAC 58 76278502 76278520 GCAGGATACAGAAAGGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcyt1a ENSRNOG00000001762 ENSRNOT00000002403 2 1 1 84 11 71572519 71572537 GAGGAAAGAGGTACCTGGC 60 71568793 71572471 CCGTAAACCAACTGCACAG 60 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 2 2 2 80 6 111077267 111077703 CACAATGACAGCCTAACCTC 59 111077745 111077764 TTCTGCCTCCAAGTAAACCT 59 NA Rattus norvegicus 81 Strc ENSRNOG00000014845 ENSRNOT00000020130 1 1 1 80 3 113341583 113342627 CCACAGGAAGTGACTTTGG 58 113341521 113341541 AGTGGAGATGAATGACTTCAG 58 NA Rattus norvegicus 81 Vps51 ENSRNOG00000020996 ENSRNOT00000028495 2 1 1 80 1 221432473 221432491 CTGGACTATGAGACAGCCA 59 221432231 221432429 AACAGGAGACTGATCCTGC 59 NA Rattus norvegicus 81 Ccdc90b ENSRNOG00000009462 ENSRNOT00000012781 3 1 1 80 1 157410254 157410272 TGCAAATCTGAGAGCAGAG 58 157411368 157411468 CGACTGGTTTCATTAATCAGC 58 NA Rattus norvegicus 81 Pf4 ENSRNOG00000028015 ENSRNOT00000033406 1 1 1 81 14 18848822 18848841 CATCTCAAACGCATCACCAG 60 18848623 18848778 TCTTCAGCGTGGCTATGAG 60 NA Rattus norvegicus 81 Mef2bnb ENSRNOG00000020427 ENSRNOT00000064090 2 1 1 89 16 21024830 21026380 GAATATGCCTGCAGTGCTG 59 21024759 21024779 GATACTGATGGCCTGTTTGAG 59 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 1 2 2 80 1 102871536 102871554 TAGTAGCACCATCACAGCC 59 102871598 102872057 GGCACCATCTGGTTTACTG 59 NA Rattus norvegicus 81 Olr799 ENSRNOG00000012214 ENSRNOT00000059651 3 1 1 60 4 68805425 68805446 CTTGTTCCTCTATGTGAAACCC 59 68805463 68805485 GGAAACTACCCTATTATAGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Daam1 ENSRNOG00000004345 ENSRNOT00000005846 2 1 1 80 6 94732507 94735574 AGAAGCTAAAGAGCTGTTCAC 58 94735615 94735634 CCAAAGAACTCATCTGGCTG 59 NA Rattus norvegicus 81 Daam1 ENSRNOG00000004345 ENSRNOT00000005846 3 1 1 80 6 94691928 94694242 CCCATGAGGTTTGTAACCA 57 94694284 94694304 CTCATAGTCCATGGTCTTCAG 58 NA Rattus norvegicus 81 Smim24 ENSRNOG00000048878 ENSRNOT00000075038 2 1 1 97 7 11183675 11184944 CAAAGCCAAGTAAAGCAGAC 58 11183597 11183615 ATCGTCTGAGAACTCCTCC 58 NA Rattus norvegicus 81 Ambn ENSRNOG00000003718 ENSRNOT00000005003 2 1 1 80 14 21249150 21249168 GGCTAGTTTGAGCCTTGAG 58 21247056 21247787 CCAAGTCTAGAATACTGAGAAAGTG 59 NA Rattus norvegicus 81 Cenpm ENSRNOG00000023262 ENSRNOT00000036917 3 1 1 88 7 123470748 123472984 CAAATACAGCCTCCAGAAAGTG 60 123470681 123470699 CTCCTGTGACAAGGAAGCA 60 NA Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 2 2 2 80 1 205623460 205629965 CGGAAGATGGTTCACTCAC 58 205623398 205623416 CAGTGGATTTCCTTCAGGG 58 NA Rattus norvegicus 81 Gal3st3 ENSRNOG00000028743 ENSRNOT00000039842 3 1 1 83 1 220672490 220672508 TATTGGTGCTAGGGTGCAG 60 220676507 220676525 TCAGAGGGAACAACTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Pdcd11 ENSRNOG00000020304 ENSRNOT00000027512 2 1 1 80 1 266896969 266896990 TCATTTGAGTGACTCCTACTCC 59 266897027 266900438 GTTGACAGGATATAACATCGGAC 59 NA Rattus norvegicus 81 Cbx1 ENSRNOG00000008689 ENSRNOT00000011665 3 1 1 80 10 84670046 84670580 TTCTCAGATGAGGACAACAC 57 84670622 84670641 CTGGGACTGTAGAAACTCAG 57 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210,ENSRNOT00000084595,ENSRNOT00000083528 3 3 3 80 14 114567424 114567446 CACTTACTACCACTACTTCTCCA 59 114566722 114567387 ATAGCATTATCAAGCACCTTCC 59 NA Rattus norvegicus 81 Pcmtd2 ENSRNOG00000017404 ENSRNOT00000023989 1 1 1 86 3 177361119 177361139 GTGCAGAAAGAACATGAAGAG 58 177361186 177365759 CTTGGTCAACTTCTCTTCCA 58 NA Rattus norvegicus 81 Pcmtd2 ENSRNOG00000017404 ENSRNOT00000023989 2 1 1 87 3 177361119 177361139 GTGCAGAAAGAACATGAAGAG 58 177361187 177365760 TCTTGGTCAACTTCTCTTCC 57 NA Rattus norvegicus 81 Cd79a ENSRNOG00000020125 ENSRNOT00000027254 2 1 1 127 1 81765960 81765978 ATCTTGCTGTTCTGTGCAG 59 81767490 81767640 AGATTCAGGCCCTCATAGAG 58 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 2 1 1 61 17 66240143 66240335 GGAAAGAGGTGCAAAGAAGAC 60 66240358 66240376 AGCTTTCACCCATCTTGGA 59 NA DesignNoJunction Rattus norvegicus 81 Blk ENSRNOG00000010798 ENSRNOT00000015021 3 1 1 80 15 46564076 46565236 AGTGAGAGCAATAAAGGTGC 58 46564015 46564038 GATCTTATAGTGCTTGACCATCTC 59 NA Rattus norvegicus 81 Lgals8 ENSRNOG00000018046 ENSRNOT00000044662 1 1 1 80 17 66495411 66500715 CAAGCTCCATTTGAGCCTG 59 66495349 66495368 TCTCCTTTAACGACAACGGT 59 NA Rattus norvegicus 81 LOC257650 ENSRNOG00000028430 ENSRNOT00000038939 1 1 1 83 10 86223352 86226917 CTTCCCTGCTAGATGTGGA 59 86226961 86226982 CTCCAAATCCAGAACATAAAGC 58 NA InUTR Rattus norvegicus 81 Kif19 ENSRNOG00000003105 ENSRNOT00000004141 2 1 1 81 10 103330232 103330342 CATCGACGACTACAATCTGGA 60 103331117 103331135 AACAGTCAGAAGACCAGGC 60 NA Rattus norvegicus 81 Rn60_X_0746.5 ENSRNOG00000051197 ENSRNOT00000075930 3 1 1 60 X 73730479 73730497 GACTCAGCTGCTTAAGCTC 58 73730437 73730458 TTGCTTCTTCTCTTGCTTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ktn1 ENSRNOG00000012255 ENSRNOT00000016449 2 1 1 80 15 24547967 24549452 TTTGCACAAGGCTCAACAG 59 24549494 24549514 TCAATAACAACCGTGTCTCCA 60 NA Rattus norvegicus 81 Cygb ENSRNOG00000011541 ENSRNOT00000016067 3 1 1 132 10 105627884 105627902 ACATGGAGATAGAGCGCAG 59 105622691 105627788 ACAAAGAACCTCACCAGGA 59 NA Rattus norvegicus 81 AABR07068150.2 ENSRNOG00000054416 ENSRNOT00000073128 1 1 1 116 9 85968837 85985257 ATTCTACTGCAGGTCCAGC 60 85968739 85968757 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Apba3 ENSRNOG00000020466 ENSRNOT00000027784 1 1 1 80 7 11314690 11314797 TCACAGAGACAAGAGAAATCCA 59 11314631 11314649 ATACTGGCTGTTCCTGTCC 59 NA Rattus norvegicus 81 Apba3 ENSRNOG00000020466 ENSRNOT00000027784 2 1 1 80 7 11314689 11314796 CACAGAGACAAGAGAAATCCAC 59 11314630 11314649 TATACTGGCTGTTCCTGTCC 59 NA Rattus norvegicus 81 RGD1560303 ENSRNOG00000025799 ENSRNOT00000004344 2 1 1 60 1 14115931 14115949 CAGTTTCCCAAACCGTGAC 59 14115889 14115907 GTCCTGCACATGAAATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099183.3 ENSRNOG00000060941 ENSRNOT00000074099 3 1 1 138 10 87529562 87529580 GATCCTTCTCCTCCCAGAG 58 87529442 87529461 CAGATGGGCCTAGTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 2 2 2 80 2 198704295 198704313 ACCACCATTATCCTTCCCA 58 198704127 198704255 CTCTAGAGTCTCTAGTTTCTGGA 58 NA Rattus norvegicus 81 Rbp2 ENSRNOG00000013932 ENSRNOT00000018755 3 1 1 81 8 106516044 106516064 TGACCTAGATTTCACAGTGGG 60 106516107 106525958 GGTGACTAGGGTCTTGACG 60 NA Rattus norvegicus 81 Actr10 ENSRNOG00000007504 ENSRNOT00000010300 1 1 1 80 6 93391079 93391099 AGTCAGTGTTATGTCCTTCCC 60 93391141 93394446 GTAGGACAGATGGGACCTC 59 NA Rattus norvegicus 81 AABR07017658.1 ENSRNOG00000046197 ENSRNOT00000075008 2 1 1 61 15 29680305 29680417 GGGATAAACTTTCTCCTGAGAG 58 29680265 29680283 ACACGAACATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912373 ENSRNOG00000047537 ENSRNOT00000075067 3 1 1 82 5 28486016 28488033 TCTCTTCTCCTCCAGGACC 60 28488077 28488097 AACTCCACTTTGTAAGCACTG 59 NA Rattus norvegicus 81 LOC683844 ENSRNOG00000042667 ENSRNOT00000012598 1 1 1 60 5 129298076 129298095 GACCCAATTCGATTTCTGCC 60 129298035 129298055 ACCAGTCATCTATACAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp13a4 ENSRNOG00000001714 ENSRNOT00000002333 2 1 1 80 11 74943753 74943774 CATCTTTGCAAGAATGTCTCCT 59 74943813 74945616 CACATACCCACAAAGTAGTCC 59 NA Rattus norvegicus 81 RGD1563780 ENSRNOG00000048565 ENSRNOT00000074218 3 1 1 84 15 29349564 29349756 GATTTGCTGGGTGAGAGGA 59 29349498 29349517 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Rn60_X_0683.1 ENSRNOG00000051137 ENSRNOT00000076199 2 1 1 60 X 67362028 67362048 TAGTCCTTGGTCAGTATCTGG 58 67361988 67362008 TTTAGCCATTCTCAGTTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec14l1 ENSRNOG00000002722 ENSRNOT00000003690 3 1 1 80 10 106095264 106095282 CTTTACACATCGAGGCCCA 60 106095326 106096436 CAGGGTGAACCGTATAGCA 59 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 1 2 2 177 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885047 171885065 CTGAAATGCCGAGTGAGGA 60 NA Rattus norvegicus 81 Cd8b ENSRNOG00000007129 ENSRNOT00000009392 1 1 1 80 4 99186026 99188953 AGTGTGAAGCTATCAGCTCTC 60 99188993 99189013 TGTTTGGTTGGTTTGAACCAG 60 NA Rattus norvegicus 81 Olr789 ENSRNOG00000048999 ENSRNOT00000071479 1 1 1 60 3 103344634 103344653 ACATTCCTCAAGTGGTTCCT 59 103344593 103344612 CACAACAGAGATGTGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc73 ENSRNOG00000022660 ENSRNOT00000041362 2 1 1 80 3 94980648 94980669 TGTTTGGATACTGAATACAGGG 58 94980709 94981706 AAGAGGCTGTAAGTCTTCTG 57 NA Rattus norvegicus 81 Vegp2 ENSRNOG00000033020 ENSRNOT00000041399 2 1 1 80 3 4220744 4221198 ATCAGGATGTGTCAGGAACG 60 4220683 4220704 ACACAGATCCAAACTTCTTGTC 59 NA Rattus norvegicus 81 Chrnb2 ENSRNOG00000020778 ENSRNOT00000028200 3 1 1 80 2 189093865 189094624 GGTTCTATACAACAATGCTGAC 58 189093806 189093824 AAGATGCTGCCATCATAGG 57 NA Rattus norvegicus 81 Rn60_2_2049.2 ENSRNOG00000053381 ENSRNOT00000087001 2 1 1 60 2 185447636 185447655 TTAACATGACTGATCGGGAC 57 185447595 185447616 AGCATATCGTGAAACTTTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2049.2 ENSRNOG00000053381 ENSRNOT00000087001 3 1 1 60 2 185447535 185447556 ACTGATGGTATGATTAGTGAGG 57 185447496 185447515 AGTGTCCCATTTCAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St8sia3 ENSRNOG00000018305 ENSRNOT00000024752 3 1 1 80 18 59753128 59754752 CAACATGTCAACAGGTACTGG 59 59754793 59754812 TGCAAGGGTGTACATAAGGA 59 NA Rattus norvegicus 81 Diexf ENSRNOG00000004789 ENSRNOT00000006395 1 1 1 80 13 111843964 111847729 GACACAGGACCATATGTCTC 58 111843903 111843924 GAAGATTTCTGTGATACACCAG 57 NA Rattus norvegicus 81 Pth2 ENSRNOG00000020681 ENSRNOT00000028072 1 1 1 214 1 101178273 101178291 CTTCTACTGCTTGTGCCCT 60 101178638 101178656 ATGTAAGAGTCCAGCCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Mrgprx3 ENSRNOG00000014227 ENSRNOT00000019051 2 1 1 61 1 103299380 103323416 GAAAGCTTCACCGGTACAG 59 103299337 103299355 GTGACTGCTATTGTCGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Olr661 ENSRNOG00000046340 ENSRNOT00000008077 3 1 1 60 3 77482615 77482633 TCGCAAAGCTCTTTCTACC 58 77482573 77482593 TGGCAAGAAGAACATGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 3 2 2 113 1 90952694 90953342 AGCCTCAGGACAAGAAGAG 59 90952507 90952525 GGAGAAGGAGGAAGGTCAG 59 NA Rattus norvegicus 81 LOC100911492 ENSRNOG00000048322 ENSRNOT00000074488 1 1 1 80 15 25504518 25504537 GTACCCAGACATCTTCATGC 59 25502626 25504477 TTCTTAAACCATACCTGCACC 58 NA Rattus norvegicus 81 Rarres1 ENSRNOG00000037853 ENSRNOT00000057504 1 1 1 82 2 164662807 164662828 GGATTATCTGCTTTACAAGCAG 58 164656894 164662767 CAATGTGACCTTGATTATCAGG 57 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000086206 2 1 2 86 10 47118017 47128926 TGTTGGAATGGTTAGCCTG 58 47117949 47117967 TACTCAAACTGGTCCTGGG 59 NA Rattus norvegicus 81 Etv3 ENSRNOG00000043095 ENSRNOT00000021577 1 1 1 83 2 186876389 186882596 CTCAAGTGGTGTGGTTCCT 60 186882642 186882661 GAATGGGTGTCTAGAGGTGG 60 NA Rattus norvegicus 81 Dnmt3l ENSRNOG00000001212 ENSRNOT00000001610 2 1 1 80 20 11358295 11358316 TGGATATGGTACTGGAAGACTC 59 11358000 11358256 CTTCGTACCTGATGACCTCTC 60 NA Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 2 2 2 82 2 243147601 243148260 AAGAAGAAAGAGGAGATGGAGG 59 243148303 243148321 GCTTAACAGGGACACAAGG 59 NA Rattus norvegicus 81 Pak2 ENSRNOG00000001747 ENSRNOT00000049862,ENSRNOT00000077269 1 2 2 80 11 71995451 71996460 GAACACCAGCACTGAACAC 59 71996504 71996522 GAGCAGCATCTTCATCGTC 59 NA Rattus norvegicus 81 AABR07032503.1 ENSRNOG00000038598 ENSRNOT00000058894 1 1 1 80 18 68926105 68926125 CCAGCATTACATCAAGAACAC 58 68925310 68926063 AGAGTTTGCACCTGATCTC 57 NA Rattus norvegicus 81 Olr242 ENSRNOG00000050447 ENSRNOT00000044619 3 1 1 60 1 172158346 172158365 CTGGAACCATCATTGTGGTC 59 172158387 172158406 ATGAGGATGTAGGTGTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Odam ENSRNOG00000023372 ENSRNOT00000037003 1 1 1 80 14 21850857 21851359 ACAGCCATGAGTTACTCCT 58 21850084 21850102 GAATCCAGGAGTTGAAGGC 58 NA Rattus norvegicus 81 Odam ENSRNOG00000023372 ENSRNOT00000037003 2 1 1 80 14 21851480 21851498 TCATCGGAGCTACATCGTC 59 21850852 21851356 GATTCAGGAGTAACTCATGGC 59 NA Rattus norvegicus 81 Nt5dc3 ENSRNOG00000026793 ENSRNOT00000031871 2 1 1 80 7 27344141 27344161 AGAGGTCATTGACATGTACGA 59 27344202 27345219 TTCCCGTGAGAACTCTTTCC 60 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000090538,ENSRNOT00000014470 1 2 4 80 2 149277790 149277810 CTTCTCGGATTTCCTTTCCTG 59 149277852 149280352 CACAGAGTGACAGTCTGCA 60 NA Rattus norvegicus 81 AABR07017707.1 ENSRNOG00000047808 ENSRNOT00000070991 3 1 1 105 15 30270773 30270909 CTCCTCATCCTCACAAGGG 59 30270978 30270996 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960,ENSRNOT00000078947 3 2 2 87 7 124161740 124161758 GAGGAAGTACCAGGAGGAC 59 124158604 124161689 GTCGTCAAAGTACCTGCTG 59 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 3 2 2 82 16 20694963 20694981 TCTCCGTCCTGATCATCCT 60 20695025 20695163 AGTTAGAGGCTGGAACTTGAG 60 NA Rattus norvegicus 81 Cdk5r1 ENSRNOG00000021685 ENSRNOT00000031746 1 1 1 60 10 67863058 67863076 GATCAATGCTGACCCACAC 59 67863098 67863118 ACCACTCTCATTCTTCAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf5 ENSRNOG00000020274 ENSRNOT00000027482 2 1 1 80 1 266855414 266857124 AGTCCGGATAGGAACTACC 58 266857167 266857186 TAAGCAAGTGAAAGTCTGCA 58 NA Rattus norvegicus 81 Alpk2 ENSRNOG00000017421 ENSRNOT00000042352 2 1 1 80 18 60972814 60972834 AGTCACTGCTGAGTTTAACCT 59 60968938 60972682 ATCTCTTCACATCCTCTGTATTCC 60 NA Rattus norvegicus 81 Hdac2 ENSRNOG00000000604 ENSRNOT00000000742 2 1 1 80 20 43089154 43089427 AAATTCCCAATGAGTTGCCA 58 43089093 43089114 TGTTTGAGGGACTAATATGCAG 58 NA Rattus norvegicus 81 Armcx1 ENSRNOG00000046862 ENSRNOT00000052422 3 1 1 80 X 105913584 105913603 ACTACTTGGATCTCTGAGGG 58 105913645 105913928 ACAGTGATACGCTTGTATGC 59 NA InUTR Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000040540,ENSRNOT00000085897 1 3 3 80 15 28307229 28307464 ATTCCTCAAGATGGCGGAC 60 28307036 28307057 ACGAAGTACTTGAAAGCTTCTG 59 NA Rattus norvegicus 81 Socs6 ENSRNOG00000038212 ENSRNOT00000058179 1 1 1 182 18 85980711 85980731 TGCCTCCATAAGATTTGTCTG 58 85965388 85965406 CCTGAAGGTCTTCAGACTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kera ENSRNOG00000004635 ENSRNOT00000006234 1 1 1 60 7 38860509 38860527 GCATCTACACCTGGATCAC 58 38864621 38864639 GCTGGGACATATTACCGAC 58 NA DesignNoJunction Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 3 1 1 87 1 221596602 221596770 CCCTTTAACGTGACAGTGC 59 221596819 221596839 TAGACTCACAGTGTCCTACAC 59 NA DesignNoJunction Rattus norvegicus 81 Tbl2 ENSRNOG00000046252 ENSRNOT00000075138 3 1 1 98 12 24574065 24574083 CAAAGATTTCCTTCAGCGG 57 24571594 24574003 TGAATTTCCCTGCAGTCAG 58 NA Rattus norvegicus 81 Trim54 ENSRNOG00000006146 ENSRNOT00000008113 2 1 1 83 6 26603836 26603854 ATGACGAGGTGACTTTGGA 59 26603495 26603789 ATCAGTGCAAACCTTCTGG 58 NA Rattus norvegicus 81 Mapkapk2 ENSRNOG00000004726 ENSRNOT00000061070 1 1 1 80 13 47787451 47788009 GAAGTATCAGAAGAAGTGAAGATGC 60 47787395 47787418 GAATTCTGTGATGGTCATTCTCTG 60 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 2 2 2 87 6 126710723 126710746 GTGCTAATGCATCTAACTATCCTC 59 126708771 126710682 GAAGATGTTCCTATGAAAGTCTGC 60 NA Rattus norvegicus 81 LOC679149 ENSRNOG00000048039 ENSRNOT00000074240 3 1 1 80 19 2984 3003 CATCATGGAAAGTGGAGTGG 59 2186 2943 ACCTTGGCTACCATAGTAGAG 59 NA Rattus norvegicus 81 Tnfrsf13c ENSRNOG00000007664 ENSRNOT00000056037 3 1 1 86 7 123455139 123455627 AAGGAGTCCAGCAAGAGTC 59 123455071 123455089 TGAATGGAGGCCAGTTAGG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000088130 2 1 6 83 20 3559075 3559095 TCCCTATAGTTTAAGCCTGCC 59 3559140 3562542 ACAGCATCTCCAAGGTAGC 60 NA InUTR Rattus norvegicus 81 Crx ENSRNOG00000013890 ENSRNOT00000018858 3 1 1 80 1 77748320 77748338 TACCCGGATGTGTATGCAC 60 77745921 77748277 ATTCTTGAACCAGACCTGGA 59 NA Rattus norvegicus 81 LOC103690291 ENSRNOG00000058639 ENSRNOT00000088672 2 1 1 60 4 72307960 72307979 CTCTTTGTCCTGATCTTGGT 57 72307999 72308020 GAAGAATCAGAGAATTTCCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpsf4 ENSRNOG00000000985 ENSRNOT00000042474 1 1 1 80 12 11200807 11203683 TCACTTGCTACAAGTGTGGT 60 11200746 11200764 ACTGTCCACTGAGAAAGGC 60 NA Rattus norvegicus 81 Aldh3b2 ENSRNOG00000017872 ENSRNOT00000024034 1 1 1 80 1 219199669 219199863 GTGTCCACCAACTTTCTCAC 59 219199905 219199924 GGGAGCGATGATAAGTACCA 59 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 1 2 2 80 4 177037409 177037427 GAAGAGTTATCCCGACCCA 59 177033473 177037368 CAATGTAGATGATCTTGCACTG 58 NA Rattus norvegicus 81 Pglyrp1 ENSRNOG00000013395 ENSRNOT00000018233 3 1 1 92 1 79791071 79791089 AGACTCCTGTGAACAGCAG 59 79791142 79794938 TCTCCAATGAGGAAGTTGTAGG 60 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 1 2 2 80 17 82010514 82010535 AACGCTCAGTATTAAACAACCC 59 82010575 82013479 TCTGAACTTCCGCTAAGCTC 60 NA Rattus norvegicus 81 Rnase2 ENSRNOG00000032133 ENSRNOT00000050820 2 1 1 66 15 28155061 28155239 GGAAACATGGGTGTGAAGC 60 28155013 28155031 TTGAGACAAGTCCCAGCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910370 ENSRNOG00000048523 ENSRNOT00000073724 1 1 1 80 7 117969530 117969697 TGTTGCCATGAATCCTGTG 59 117969740 117969759 TCTCTTCGGATAGTGGAAGG 58 NA Rattus norvegicus 81 Rrnad1 ENSRNOG00000011645 ENSRNOT00000015793 3 1 1 85 2 187296999 187297017 GCTAGTAGCGAGAGCTCAG 60 187296315 187296950 TTTGCACCATCTTTGGGTG 59 NA Rattus norvegicus 81 Cdc42bpg ENSRNOG00000027456 ENSRNOT00000038016 3 1 1 80 1 221678265 221678283 GACATGAATGGCCACATCC 59 221678326 221678481 GACTGATGAATCCACCATGC 59 NA Rattus norvegicus 81 Celf2 ENSRNOG00000023661 ENSRNOT00000023436 2 1 1 80 17 75352490 75493652 GCTGACAGAATTAACGGCA 59 75493695 75493714 CTTAATGGCATCTGGGTCTG 59 NA Rattus norvegicus 81 Celf2 ENSRNOG00000023661 ENSRNOT00000023436 3 1 1 80 17 75647772 75652054 CCAGAAGGAAGGTCCAGAG 59 75652098 75652116 ATCTGCAGAATGTCCTGGT 59 NA Rattus norvegicus 81 Ncln ENSRNOG00000004793 ENSRNOT00000007110 1 1 1 81 7 11086711 11086729 CTCTGTACTGCTGGAGCTG 60 11086773 11087632 GAACAGAAGGTTGTACGCTG 59 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000047951 ENSRNOT00000074167 1 1 1 84 4 82171440 82172416 TAGTCACGACAACATAGGTGG 60 82171376 82171394 TTCTTTCTCCAGCTCCAGG 59 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578,ENSRNOT00000081125 1 2 2 80 7 2982030 2982248 CCAATAGAAGGTATGCTGTCAC 59 2981971 2981993 GTCTGTAGGATTCTGGATAATGG 58 NA Rattus norvegicus 81 Sccpdh ENSRNOG00000046051 ENSRNOT00000057787 1 1 1 80 13 97711775 97712480 AGATGAACGGCACTTTAACTG 59 97712986 97713006 TTCCGTCATGAATACACAACC 59 NA Rattus norvegicus 81 Gpr158 ENSRNOG00000024832 ENSRNOT00000034098 1 1 1 80 17 88250579 88451155 TAACAACTCAGAGTGTATGCCA 60 88451194 88451214 TAGAATCCTGCTTTGCAAACG 60 NA Rattus norvegicus 81 LOC102550729 ENSRNOG00000046450 ENSRNOT00000070851 2 1 1 80 18 87637666 87637686 TGGATCCTTCACAGAAGAGTC 59 87637726 87637932 CCCAATTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 Fam135b ENSRNOG00000005159 ENSRNOT00000006966 2 1 1 80 7 112679246 112682697 TGGTTAGTACTGGCTTGTGG 60 112679185 112679203 CAGCGTTATCCCTGAAGGT 60 NA Rattus norvegicus 81 Banp ENSRNOG00000019140 ENSRNOT00000025894 3 1 1 80 19 54802025 54803506 ATATCATTAGCAACGCTGTTCC 59 54803547 54803565 CATTGTGACTGTCGTCCTG 59 NA Rattus norvegicus 81 AABR07024972.1 ENSRNOG00000049177 ENSRNOT00000075287 1 1 1 80 16 23318665 23318683 TCAGATACTGCCCAATCGT 59 23318725 23318976 CTAGGCAGAAATCCTTGAGAG 58 NA Rattus norvegicus 81 Gpr151 ENSRNOG00000027103 ENSRNOT00000043544 2 1 1 60 18 36892749 36892768 CAGAAAGCCTGTAGTTACCT 57 36892708 36892727 AAGGGTCTCAATGTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000050002 1 1 4 80 7 123628834 123629813 TCTACAAGCTTCAACACCG 58 123628772 123628791 TCAGTCTGTTGACAATGACC 58 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000058750 ENSRNOT00000079546 2 1 1 90 12 30223367 30227087 TATTACTTGGCATGACAGCC 58 30223296 30223314 TAGGCCAGGTACAAAGACC 59 NA Rattus norvegicus 81 LOC100911693 ENSRNOG00000030704 ENSRNOT00000042983 2 1 1 60 2 104999707 104999727 AGTACAAGTCAGATCAGTGGA 58 104999667 104999689 TCCCTATCATAACGCTTCTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000086282 1 1 5 60 9 81675285 81675308 CCAGTTCAAGTAATTCAGGATAGG 59 81675326 81675345 AGCCAAGTAATGGAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smek1 ENSRNOG00000027773 ENSRNOT00000034961 3 1 1 86 6 125042144 125043216 CTATTACCACAAAGGGAGGAC 58 125042078 125042097 TGTCTTCCTTGTCTTCATCC 57 NA Rattus norvegicus 81 Asb6 ENSRNOG00000024786 ENSRNOT00000034927 3 1 1 81 3 9661338 9661873 GCAGACAAGAATGGGAAGAC 59 9661276 9661295 GGATGTTGTCTGTGTTGTGG 60 NA Rattus norvegicus 81 Olr763 ENSRNOG00000042991 ENSRNOT00000046220 3 1 1 67 3 102683154 102683401 AAAGCAAATCGCTCTGCAG 60 102683429 102683450 ATCTGAAGTTCCTGAGAGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rrp1b ENSRNOG00000001194 ENSRNOT00000001583 3 1 1 80 20 10860831 10862103 CAGACTAGTCAGAAAGTTCCA 57 10862984 10863003 TCACCAGCAGAAATATCCTC 57 NA Rattus norvegicus 81 Ovol3 ENSRNOG00000024880 ENSRNOT00000041301 1 1 1 80 1 91040016 91040916 AGGACTCACACTGGAATACG 59 91040959 91040977 ATGAGCTTCAAGGGAGCAG 60 NA Rattus norvegicus 81 Tnfrsf13b ENSRNOG00000002304 ENSRNOT00000003139 2 1 1 84 10 47412627 47412645 AAGAGAACCTGTGTCTCCT 58 47412692 47414555 TGCAGTTGATGAATTTGCAG 58 NA Rattus norvegicus 81 Trip11 ENSRNOG00000005292 ENSRNOT00000007061 1 1 1 80 6 125747171 125747191 CCTGAAGCCTTTAGATTCTCC 58 125745226 125747129 CTGGATTCCGCTGTATCTC 58 NA Rattus norvegicus 81 Trip11 ENSRNOG00000005292 ENSRNOT00000007061 2 1 1 80 6 125787959 125788542 AAGAGGCTACTAAGCATGTG 57 125787898 125787919 GTCTCTTGATCACACTATCTCC 58 NA Rattus norvegicus 81 Dkk1 ENSRNOG00000048688 ENSRNOT00000074393 3 1 1 108 1 248897976 248898211 CTTGACAACTACCAGCCCT 59 248897886 248897905 AGATTTGTACACCTCCCACG 60 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 2 2 2 80 3 54517106 54519233 ATACCCTCCAATGAAAGTGC 58 54517045 54517065 ATTTCTTTATCCTCTACGCCG 58 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664,ENSRNOT00000005853 1 3 3 80 13 47586403 47586422 TTCTACTGGTGTCTTACCGA 58 47586464 47587018 TGGCTTCTTTGTAGCTTCAG 58 NA Rattus norvegicus 81 Mir192 ENSRNOG00000035530 ENSRNOT00000053653 1 1 1 60 1 221634999 221635021 CTATGAATTGACAGCCAGTACTC 59 221635041 221635059 CCTGTGACCTATGGAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase1 ENSRNOG00000053633 ENSRNOT00000086427 2 1 1 61 15 28075060 28075078 TAAGAGGCAGCACATGGAC 60 28075103 28075121 TCTGGTTACAGTAGGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000036338 3 1 2 81 8 12161675 12241777 CACAGACAGGATCAACACTC 58 12241820 12241839 CAGTGTTTGGATTTGAGCAG 58 NA Rattus norvegicus 81 LOC100294508 ENSRNOG00000012204 ENSRNOT00000016493 3 1 1 80 5 144850498 144850520 AGAGAAGATCTCTGAAGACACAG 59 144850558 144854194 ACAACAGTCAAGCTGAAAGTG 59 NA Rattus norvegicus 81 Fam92b ENSRNOG00000021714 ENSRNOT00000035651 2 1 1 80 19 53745390 53745409 GGTGGAGGTATACTCCAGTG 59 53744232 53745348 ATCTTGGCTCTGAAGTCCTG 60 NA Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 1 2 2 80 10 47021731 47021750 GTGAAGCACTGGATTTCCTC 59 47021793 47025677 AGAGGCCACTCTTTGTAGG 59 NA Rattus norvegicus 81 Pop5 ENSRNOG00000001199 ENSRNOT00000001591 3 1 1 81 12 47138867 47139053 TTACATGTGGGAGGTACCA 58 47138804 47138822 TCTGCAACAAGACCAACAG 58 NA Rattus norvegicus 81 LOC100363472 ENSRNOG00000000641 ENSRNOT00000000794 3 1 1 84 20 22738029 22738049 GAAGAAGCGATTTCTTGTCAC 58 22743097 22745000 ATAAGTGAGCCTGTTCAGAC 57 NA Rattus norvegicus 81 Efcab6 ENSRNOG00000011094 ENSRNOT00000015447 2 1 1 80 7 124834374 124836271 TAATTATCAGTCCGACGCCC 60 124834313 124834332 TTAACTTCACAACCACGCAG 59 NA Rattus norvegicus 81 Sall3 ENSRNOG00000026116 ENSRNOT00000034896 3 1 1 117 18 77575096 77576495 CAATCTCAAGGTACACATGGG 59 77574999 77575017 AGAGAACTTGAGAGCGTCG 60 NA Rattus norvegicus 81 Olr560 ENSRNOG00000037837 ENSRNOT00000057483 2 1 1 60 3 75412809 75412831 GGTCATGAACAATAAGGTCTGTG 60 75412849 75412869 TGGAATAATACAGACCCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap7 ENSRNOG00000013202 ENSRNOT00000017617 3 1 1 81 1 21161031 21164280 GAAGTAAACATAGGTACCGACG 59 21164322 21164340 GCAAAGTCAGATGCTTCCC 59 NA Rattus norvegicus 81 AABR07013425.1 ENSRNOG00000050075 ENSRNOT00000073001 3 1 1 60 2 236822807 236822825 ACACATGGAAACAACCCTG 58 236822765 236822786 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 1 1 1 60 17 70041963 70045333 AAGGGCTGGGAAGAATCAG 59 70041921 70041940 GGAAATGCCTTGATTGAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Igbp1b ENSRNOG00000008125 ENSRNOT00000010707 2 1 1 60 4 172710524 172710542 TCTGACGGTGAATGACTGG 59 172710566 172710584 CCGAACAGAAGATGAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361103 ENSRNOG00000033855 ENSRNOT00000042619 1 1 1 60 4 178617488 178617509 TACATGCGAATCTACAAGAAGG 58 178617530 178617548 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 3 2 2 84 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054406 14054426 TTTCTCTTGGAGTGAGGAGTG 60 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748,ENSRNOT00000020556,ENSRNOT00000079515 2 3 3 80 3 154943368 154943386 GTACAAAGGCGACAAGGAG 59 154943427 154949002 TGCATGATACATGTTAACGTGG 60 NA Rattus norvegicus 81 Trim8 ENSRNOG00000019968 ENSRNOT00000027047 2 1 1 80 1 266268755 266268907 AATCCTAATGGACAGGACCC 59 266268950 266268968 AAGAGCTTGGAGTTCAGGT 59 NA Rattus norvegicus 81 Mir344i ENSRNOG00000045909 ENSRNOT00000071136 3 1 1 60 1 122506602 122506620 AGCTCTAAGCTGGATCCAG 59 122506560 122506580 CCTTCTCTATTGAGCAGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prima1 ENSRNOG00000008915 ENSRNOT00000011906 2 1 1 83 6 127078928 127083807 GCCATAAAGAGGAAACCACTG 59 127078865 127078883 TTTGTTACTCGGCGAGGAG 60 NA Rattus norvegicus 81 Hpgds ENSRNOG00000006583 ENSRNOT00000008826 2 1 1 80 4 95963629 95963650 GCTTATTTGGACATCAAGTACG 58 95960603 95963588 GCCAAATGGAAGAGTTGGT 58 NA Rattus norvegicus 81 Xpc ENSRNOG00000008274 ENSRNOT00000011490 2 1 1 80 4 123150626 123150647 CCCTATTCGCTTTACCAAAGTG 60 123150116 123150588 GTTCCAATGAACCACTTTACCA 59 NA Rattus norvegicus 81 Cited2 ENSRNOG00000056940 ENSRNOT00000086790 3 1 1 298 1 12823587 12824080 AGGACTGGAAATGGCAGAC 60 12824342 12824360 GGGAGTTGTTAAACCTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000080132,ENSRNOT00000078692 3 2 4 81 1 102779530 102779551 TTATCCTCTGCTCTTTGTTCCT 59 102777916 102779488 TCCCAAGTCCCTTGTATGG 59 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 2 2 2 80 15 2639717 2639735 ACATCAGGTACCAACTGCA 59 2636609 2639676 GACCTTTGCAGAAATAGAAGCA 59 NA Rattus norvegicus 81 Nkg7 ENSRNOG00000017749 ENSRNOT00000023942 2 1 1 86 1 98493551 98493648 AAGTAGCAGGTTATATCCACGT 59 98493486 98493504 ACAGAACCAGGAAGCTCAC 60 NA Rattus norvegicus 81 Sgsh ENSRNOG00000049552 ENSRNOT00000070934 1 1 1 80 10 108471348 108473032 GGATGGATCAAGGGATAGGA 58 108471287 108471306 ATGTGAAGATGATGAGGGTG 57 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 3 2 2 80 4 100299540 100299559 CAACAGTCACCAGATATCGC 59 100299404 100299498 CATCAAACCCTGATCTCCTG 58 NA Rattus norvegicus 81 Tra2b ENSRNOG00000001783 ENSRNOT00000002429 1 1 1 80 11 82387729 82389299 GGAGACCCACTTATGGCAG 60 82389340 82389361 AATAGTCCCGGTCATCATAACC 60 NA Rattus norvegicus 81 Cdnf ENSRNOG00000026493 ENSRNOT00000036299 3 1 1 80 17 78735199 78735218 TTTGGATCTCCAACCATGTG 58 78726335 78735159 ACTCTTTGCATACTTCACAGTC 59 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769,ENSRNOT00000074991 3 2 2 80 19 119042 119705 TAACTTCTATCGCAACCTGC 58 118981 119000 AGCTTAAACTCCTTGCTCTC 58 NA Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 2 2 2 80 1 197883674 197883694 CTACTATTACTGATGTCCGCA 57 197883412 197883632 GGCCTTCTACCTTAACCAC 58 NA Rattus norvegicus 81 Tekt3 ENSRNOG00000027212 ENSRNOT00000038276 2 1 1 80 10 49496090 49499029 ACTTATCGAAGACCCTGCA 58 49499073 49499091 CAGACTTCTCCTTGATGGC 58 NA Rattus norvegicus 81 Olr636 ENSRNOG00000049429 ENSRNOT00000040581 2 1 1 60 3 77290005 77290025 GGACATTTGCTATACCTCCTG 58 77290045 77290065 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osgep ENSRNOG00000009333 ENSRNOT00000012790 2 1 1 80 15 27842971 27842989 TGGCTGGGAGATGTTTCAG 60 27842643 27842931 ACTTCATCTGTCCTATACCTCTG 59 NA Rattus norvegicus 81 Osgep ENSRNOG00000009333 ENSRNOT00000012790 3 1 1 80 15 27842968 27842986 CTGGGAGATGTTTCAGGCT 59 27842640 27842929 TCTACTTCATCTGTCCTATACCTC 59 NA Rattus norvegicus 81 AABR07000658.1 ENSRNOG00000055111 ENSRNOT00000086275 3 1 1 80 1 21145671 21145692 GCTGTCAAGAACTATGCCA 58 21145609 21145628 CAGGTCTTTGATGGTTCTGG 59 NA Rattus norvegicus 81 Sept6 ENSRNOG00000043182 ENSRNOT00000067942 1 1 1 80 X 123540376 123543632 ACCATTCAGTTTACAGGAGAC 58 123540316 123540338 CTCATCTCCTCTTCTTTCTTCTG 58 NA Rattus norvegicus 81 Sept6 ENSRNOG00000043182 ENSRNOT00000067942 3 1 1 80 X 123554794 123558797 GGATAGTAAGGTGAACATCATTCC 59 123554737 123554757 TTGATCTTGAACTTTGCCAGC 60 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 2 2 2 80 6 125877550 125877649 TGTACGATCTTTATCAGTCTCG 58 125877690 125877708 TATCAAAGGCTGCATCCAC 58 NA Rattus norvegicus 81 Klhl33 ENSRNOG00000025868 ENSRNOT00000032992 3 1 1 82 15 27814287 27814394 GCTTCAACTCTCAGGTGGA 59 27814223 27814241 AAAGGGAAGAAGCTCCGAG 59 NA Rattus norvegicus 81 Serpina9 ENSRNOG00000042391 ENSRNOT00000012861 2 1 1 90 6 127663365 127664328 GGTTTCTAAGGCTGCTCAC 59 127663293 127663312 GCGGACTATTAGTTTGGTGG 59 NA Rattus norvegicus 81 Rps4x ENSRNOG00000029574 ENSRNOT00000051149 2 1 1 60 4 35729914 35729935 GTGTAATCACCAATAGGGAGAG 58 35729875 35729894 GCATCTTTCACATGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043711.2 ENSRNOG00000060995 ENSRNOT00000071962 2 1 1 81 19 36238371 36239557 CATGAAGAACAGGCCACAC 59 36238308 36238326 CAGAATTGACATGACCGCC 59 NA Rattus norvegicus 81 Sirt7 ENSRNOG00000036683 ENSRNOT00000054951 2 1 1 83 10 109798197 109798358 GTCCAGCTTGAAGGTACTG 58 109798132 109798150 ACAATGTAGAGTTTGGGCC 58 NA Rattus norvegicus 81 Olfm2 ENSRNOG00000020519 ENSRNOT00000027829 1 1 1 81 8 21689463 21691249 TGGAGAAGGTCCAGAATGTG 60 21689401 21689419 ATGCTGCGAACATACTGGA 60 NA Rattus norvegicus 81 AABR07017662.3 ENSRNOG00000052843 ENSRNOT00000040046 2 1 1 78 15 29852631 29852649 TTTCACTGGTGGTCCTGTG 60 29852392 29852411 ATGAGTGATTCTGGGCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Irf8 ENSRNOG00000017869 ENSRNOT00000024069 2 1 1 81 19 54332393 54332411 GTAGACCCAACAAGCTGGA 59 54332456 54334314 TAGAACTGCTGCAGGTCTC 59 NA Rattus norvegicus 81 Bcl10 ENSRNOG00000042389 ENSRNOT00000019911 1 1 1 126 2 251805487 251811343 GTGAAGAAGGACGCTTTAGAG 59 251811428 251811449 GGCAAGAAATTTCTTCTGTGTC 59 NA Rattus norvegicus 81 Ganc ENSRNOG00000024563 ENSRNOT00000011369 1 1 1 80 3 112193665 112194689 TCAAAGTTAATGGCCCTTCC 58 112194729 112194750 CATGTTGAGGGATACCATAGAG 58 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 1 1 1 152 6 26602162 26602441 AGACACTCCGATAACCTGG 59 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561157 ENSRNOG00000042258 ENSRNOT00000066310 1 1 1 128 10 13084669 13084687 AAATTATGGCACCAGCTGG 59 13084868 13084886 TTCCATCTGCACTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1561157 ENSRNOG00000042258 ENSRNOT00000066310 3 1 1 130 10 13084669 13084687 AAATTATGGCACCAGCTGG 59 13084870 13084888 GTTTCCATCTGCACTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Gucd1 ENSRNOG00000049952 ENSRNOT00000072696 2 1 1 81 20 14101738 14101954 AAGTGGAGAAATGCACAGTG 59 14101998 14102016 GAGTTCACCAAGACGATGG 58 NA Rattus norvegicus 81 Gucd1 ENSRNOG00000049952 ENSRNOT00000072696 3 1 1 82 20 14101677 14101695 TTTGACACAGAGGAGACCC 59 14101740 14101956 CTCACTGTGCATTTCTCCAC 59 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927 1 1 2 85 1 153734297 153742018 CATGAAAGTAGCACTCAGCA 58 153734231 153734249 GACTCACCTGCATGAACAC 59 NA Rattus norvegicus 81 Dntt ENSRNOG00000013615 ENSRNOT00000051058 3 1 1 80 1 260289779 260289797 CAACTCGAAGAGCCTTCCT 59 260289841 260299641 GGGTGACAGAGTCACTGAG 59 NA Rattus norvegicus 81 Chtf18 ENSRNOG00000019174 ENSRNOT00000026139 3 1 1 81 10 15096304 15096892 CTGCTCAGTGATGACTTTACC 59 15096243 15096261 GCCTCTCATGACCAAACAC 59 NA Rattus norvegicus 81 Chn3 ENSRNOG00000038211 ENSRNOT00000058177 1 1 1 80 18 85990193 85990213 ACACTGGTGTGAATATTGTGC 59 85989959 85990152 CCTTCAGATTTCAGACCTGC 59 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988,ENSRNOT00000002492 2 2 2 91 11 81333953 81333971 CTGGTCACAATGGGATACC 58 81332016 81333899 CTTAGGACCAAGAACACCTG 58 NA Rattus norvegicus 81 Spdl1 ENSRNOG00000007292 ENSRNOT00000009648 2 1 1 80 10 19646654 19650477 ACCACAGCTGAGAATTATAACC 58 19646595 19646613 CAGACTCTCCAACATCCGA 59 NA Rattus norvegicus 81 Hgs ENSRNOG00000036696 ENSRNOT00000054966 1 1 1 80 10 109641033 109641426 CTCTGGAGGTGATGGAGTC 59 109641468 109641488 CTTCCATGGTCTGTTTGTTGG 60 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083542 2 1 8 108 3 100769262 100815563 GCAAAGCCACAATGTTCCA 60 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 AABR07017783.2 ENSRNOG00000047797 ENSRNOT00000073618 1 1 1 60 15 31057682 31057798 GGGATAAACTTTCTCCTGAGAG 58 31057816 31057837 CATGAACATCAGGTTGAGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Mvd ENSRNOG00000013376 ENSRNOT00000018145 1 1 1 80 19 55264508 55264526 GCGTCAGTGAACAACTTCC 60 55263323 55264464 GGCCAAGGTATAGGCTAGG 59 NA Rattus norvegicus 81 Spaca5 ENSRNOG00000045622 ENSRNOT00000075264 3 1 1 81 X 913102 915247 GGATTGTAATGACCTACTCAACC 59 913043 913067 CATACTCTTATGTGAGGATACAACC 59 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110,ENSRNOT00000047831 1 2 2 80 1 171941400 171942422 CCAATGAGGATAAGGACCGT 59 171942463 171942483 CCATCACAATCTCCTTTACCC 59 NA Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000050973 ENSRNOT00000073780 2 1 1 60 1 259080730 259080748 CTCGAGCAATTAGGTTGGG 58 259080688 259080709 CCTAGAATAACCCGATGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan20 ENSRNOG00000005886 ENSRNOT00000008887 2 1 1 86 5 146768502 146768520 CAGTAGACAAGCCCAGGAG 60 146767296 146768452 TTTGAAGCTGGAACTCCCA 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 2 2 2 82 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797742 11797760 GTCCATCTCATCGAAGAGG 57 NA Rattus norvegicus 81 Chmp1a ENSRNOG00000016001 ENSRNOT00000021483 3 1 1 82 19 56004742 56004760 TCAGAAGGTGTCTGCAGTG 60 56004066 56004696 CAGAATCCTCCATCACCGA 59 NA Rattus norvegicus 81 Olr858 ENSRNOG00000050546 ENSRNOT00000073594 2 1 1 60 5 137758406 137758426 CTCGTCTACACTATCTTTGCT 57 137758448 137758466 AGTGGTTGATCTTGTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 1 3 3 80 1 273945315 273945335 GGACCACATCATAATCATCCC 58 273945373 273946208 CCTATTATGTTGACCTTCACCAG 59 NA Rattus norvegicus 81 Orai2 ENSRNOG00000001427 ENSRNOT00000001938 2 1 1 113 12 23553825 23553843 GGAGGAAGCTGTACCTGAG 59 23560988 23561006 GGTACTTGGTCTCCAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1563581 ENSRNOG00000040101 ENSRNOT00000047043 3 1 1 60 17 2166088 2166106 CCGCATGATGAAGAAGCTG 59 2166125 2166148 GAGAAACTCTTGGAAATCTAGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000084281,ENSRNOT00000017927 3 3 3 98 4 100277812 100277831 GATTTATCCAGCTGGCAGAG 59 100277890 100280588 CAGCATCAAGAATGCAAAGAG 58 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768,ENSRNOT00000063977 1 2 2 80 19 38864440 38868286 GACCACAGCAGAGATTCCA 59 38868327 38868348 TCAACACATCGACTAAGTTCCT 60 NA Rattus norvegicus 81 Olr458 ENSRNOG00000029578 ENSRNOT00000048041 3 1 1 60 3 73048879 73048897 GCTTATGACCGACACTCTG 58 73048837 73048856 AAGACGACATGATGCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp9 ENSRNOG00000061883 ENSRNOT00000087980 2 1 1 81 8 77560156 77563047 TTTGAGGTCTTCACAGTTGGA 60 77560095 77560113 TAAGACCTCCCAGGAAAGC 59 NA Rattus norvegicus 81 Tatdn2 ENSRNOG00000042482 ENSRNOT00000038964 3 1 1 96 4 145654210 145654228 ACGTCCAAAGGATCCTCTC 59 145654285 145657714 CTTTAGAATCAACCTTCACGCT 59 NA Rattus norvegicus 81 AC095959.2 ENSRNOG00000061898 ENSRNOT00000087272 3 1 1 60 3 78153987 78154007 GGAAAGCTCTGTCTACTTGTG 59 78153947 78153966 CATGGGACAAAGAACAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910682 ENSRNOG00000050481 ENSRNOT00000071629 1 1 1 60 5 137786047 137786066 TCATTGTCACCTTGATCCAC 58 137786088 137786107 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311805 ENSRNOG00000012597 ENSRNOT00000017045 2 1 1 80 18 3615728 3615747 ACCCAAGTTTGTGATAGCTG 58 3615789 3616028 TGTAAGTAATGCTGCACTGG 58 NA Rattus norvegicus 81 RGD1311805 ENSRNOG00000012597 ENSRNOT00000017045 3 1 1 80 18 3615729 3615749 CCCAAGTTTGTGATAGCTGTG 60 3615789 3616029 GTGTAAGTAATGCTGCACTGG 60 NA Rattus norvegicus 81 LOC100909476 ENSRNOG00000009166 ENSRNOT00000012256 2 1 1 83 6 127310092 127311127 GCTGGAAGACTGTGTTCTC 58 127310027 127310046 TGGTAATGGATGACATGCTG 58 NA Rattus norvegicus 81 Fam203a ENSRNOG00000029238 ENSRNOT00000040981 1 1 1 80 7 117435909 117435930 GATCCTTCGAGAGTTATATGCC 58 117435969 117436063 CCAATAAGCACCTGGATAAGC 59 NA Rattus norvegicus 81 Prkch ENSRNOG00000004873 ENSRNOT00000006729 3 1 1 80 6 96592907 96595115 CAACCTCGAAACTCATTTCCA 59 96595156 96595175 TAACACCGATCCCATTTCCT 59 NA Rattus norvegicus 81 Olr561 ENSRNOG00000033422 ENSRNOT00000042246 2 1 1 60 3 75438425 75438444 TCAAACTTGCTTGTGGTGAC 59 75438464 75438485 ACCATTGCAACTATGTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nipa1 ENSRNOG00000042702 ENSRNOT00000068501 1 1 1 84 1 114393364 114393382 GTGCTGATCATCCATTCCC 58 114388133 114393316 CCACAAACACTGGATTGGT 58 NA Rattus norvegicus 81 AABR07017868.2 ENSRNOG00000050388 ENSRNOT00000073686 2 1 1 80 15 31989079 31989283 CATTTGTCTTGCAACCAGC 58 31989327 31989345 GTCACAGTCTTCGTCTCCA 59 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 3 1 1 129 1 80141721 80141739 CTGTTCTACTTGGGCATCC 58 80141832 80158291 TTTCCACCCAGTGGTACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ppp2r1a ENSRNOG00000011282 ENSRNOT00000015019 2 1 1 80 1 60732222 60733088 TTCTGCATCAATGTGTTGTC 57 60733131 60733149 AGCCATACGAAGAACTGTG 58 NA Rattus norvegicus 81 Vim ENSRNOG00000018087 ENSRNOT00000024430 3 1 1 80 17 80888677 80888696 GCTCAATGTAAAGATGGCTC 57 80888739 80889157 AGAGAAATCCTGCTCTCCT 57 NA Rattus norvegicus 81 Pbrm1 ENSRNOG00000028227 ENSRNOT00000016581 2 1 1 80 16 7109325 7109343 ACCATTCTGTGCCTACACC 60 7109385 7111063 ACACAGCAATAGGATCTACGG 60 NA Rattus norvegicus 81 Klk7 ENSRNOG00000018664 ENSRNOT00000025299 1 1 1 82 1 99751849 99751870 AGGTGTATAAGGATCTTCTGGG 59 99751913 99753719 TGAGTCACCATTGCATGTG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451,ENSRNOT00000041418,ENSRNOT00000056457 1 3 3 80 9 111105109 111106243 AGAGAAAGTAGTGAATGCTGAC 58 111106284 111106302 TGAGTGTGGACTCTGTAGG 58 NA Rattus norvegicus 81 LOC100363012 ENSRNOG00000033916 ENSRNOT00000051693 3 1 1 61 5 159606778 159606797 CGTCCATCCAGATGAATGTG 59 159606819 159606839 AAACTGACCATTAAATCGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912042 ENSRNOG00000047187 ENSRNOT00000075095 2 1 1 80 3 4875563 4876036 CCGTAAACTCAGGAAGAAGG 58 4876079 4876097 GAACTGAAGTTCTTGGGCT 58 NA Rattus norvegicus 81 Brk1 ENSRNOG00000010184 ENSRNOT00000013600 1 1 1 80 4 145559283 145559304 GGAGTACATTGAGATCATCACC 59 145559342 145573282 CTTGAACGACAAGACATATCGA 59 NA Rattus norvegicus 81 Trappc2l ENSRNOG00000014581 ENSRNOT00000019740 1 1 1 80 19 55425975 55425994 GCTGCATAACTCCTACACAG 59 55426036 55426859 GTATCAAAGGCCCTAGACTG 58 NA Rattus norvegicus 81 LOC680385 ENSRNOG00000011606 ENSRNOT00000015427 3 1 1 60 4 147929937 147929956 TGGAGACTTCAATTTGCCAC 59 147929977 147929997 GCCTTCATCCAATTTGATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 2 2 2 80 2 189400872 189400890 GCGTCAAGTAGTAACTGGC 59 189400931 189401325 AAACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Arvcf ENSRNOG00000001888 ENSRNOT00000044635 3 1 1 81 11 86740777 86742190 AAAGCGAAAGGGAAGAAGGA 60 86740715 86740733 CTTTCGCAGCTTCAGTACG 59 NA Rattus norvegicus 81 RGD1311756 ENSRNOG00000004442 ENSRNOT00000005903 3 1 1 80 6 124848730 124848748 CCGTGAAGAAGCACATCAG 59 124848791 124865047 TAGAAACACCAGCAATGACG 59 NA Rattus norvegicus 81 AABR07002120.1 ENSRNOG00000060288 ENSRNOT00000084168 2 1 1 60 1 66644860 66644880 CGGATGTTGTTTGACTACCTG 59 66644820 66644841 GCATATCTAAGTACTCCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc34 ENSRNOG00000005902 ENSRNOT00000065333 3 1 1 80 3 101156648 101156666 AGATGCCTGTGAGTCAGAG 59 101156710 101160264 GACTCAACTTCACAGCTGG 59 NA Rattus norvegicus 81 Rn60_2_2278.1 ENSRNOG00000046624 ENSRNOT00000074344 1 1 1 60 2 208357037 208357056 TGAGAGTTCTAGAGCACTGG 59 208356996 208357014 AACGTCATCATCTCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688970 ENSRNOG00000028913 ENSRNOT00000058760 3 1 1 80 17 89452830 89453138 CTGAGATCAGCCATATAAAGGAG 58 89453174 89453196 CAGTGGTAAAGTTCTCGATAGAG 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 2 3 3 80 20 3731249 3731429 AGTCTATGAAAGGCTCCCTG 59 3731188 3731207 AAATAGCGTCGTCTCTGGAG 60 NA Rattus norvegicus 81 LOC683961 ENSRNOG00000048698 ENSRNOT00000073017 3 1 1 60 5 57658257 57658277 TTCCGCCTGATTCTAATTGAG 58 57658295 57658317 GCTTAGTCTTATAGTATCGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clca4 ENSRNOG00000029889 ENSRNOT00000017943 2 1 1 80 2 250857386 250858294 AGGAATATGGAGATTCAGGAAGAC 60 250857329 250857353 CTTCGTTGTACTCATCAAATACTCC 60 NA Rattus norvegicus 81 Oxld1 ENSRNOG00000047517 ENSRNOT00000075206 1 1 1 82 10 109629191 109629813 GAGAGCTTTCTTCAGGGCA 60 109629127 109629147 TGAAGAACACTGTGTCTTCCT 59 NA Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 3 1 1 129 19 56311846 56311866 GTAGTCATCAGAGCAATTGGG 59 56306701 56311761 GTACCTTGACTTCTTTAGTGATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037,ENSRNOT00000006773,ENSRNOT00000041473 1 4 4 80 7 51422511 51422531 AAATCAATCAGAGAACGACGG 59 51420633 51422472 TTCATCACTATCTTGTGTCCAG 58 NA Rattus norvegicus 81 Yme1l1 ENSRNOG00000017100 ENSRNOT00000023395 3 1 1 80 17 89705532 89705554 CAGTGATACAGGAAAGCTAAGTC 59 89704235 89705495 TCATATGATTCCCGTAGAAGGA 58 NA Rattus norvegicus 81 Prmt5 ENSRNOG00000012046 ENSRNOT00000016302 3 1 1 80 15 33165086 33165105 CAGGAACCTGCTAAGAATCG 59 33164723 33165044 AATTAGCGTATTCCAGTCCC 58 NA Rattus norvegicus 81 Abr ENSRNOG00000056837 ENSRNOT00000080703 2 1 1 80 10 64604370 64604759 CGGAATGGAAAGAGTTACCTG 59 64604310 64604332 CTGTAGTTTCTGAATCGCTTCTC 60 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 1 2 2 80 3 148169779 148169797 TGACACTAAGGACCTGGTG 59 148169841 148169950 TTGGCAATCCAATGCTTCC 59 NA Rattus norvegicus 81 Zp3 ENSRNOG00000001434 ENSRNOT00000001952 1 1 1 80 12 23736492 23737582 GAAATACGGTTTACATCACCTG 58 23736433 23736451 AGGAACAGGCTTTGTTGAG 58 NA Rattus norvegicus 81 Clmp ENSRNOG00000053239 ENSRNOT00000080288 1 1 1 80 8 44962863 44963799 AGTGCTAGTGAGACCATCC 59 44963843 44963861 TCACATTGTAGCGTCAGGT 59 NA Rattus norvegicus 81 Dnaja1 ENSRNOG00000007029 ENSRNOT00000010061 3 1 1 83 5 57038031 57038338 CACCTCTCATCCAGGTCAG 59 57038384 57038403 TATGGCCGACGGTATATTGG 60 NA Rattus norvegicus 81 RGD1562532 ENSRNOG00000022890 ENSRNOT00000030112 1 1 1 80 5 122779186 122786230 AAAGTATCCAATGCTGACCAG 58 122779126 122779147 TCTACTAGAATCTGCTGAGTGG 59 NA Rattus norvegicus 81 RGD1566359 ENSRNOG00000047934 ENSRNOT00000075725 2 1 1 60 17 9457816 9457837 GTCTTGCAGATCTTGGTTATGG 60 9457777 9457796 CTGTGCATCATAGGGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311164 ENSRNOG00000055036 ENSRNOT00000089513 2 1 1 80 4 159488627 159488645 TTGGAGGCGGTTAAGTCTG 60 159488688 159490237 TAGGGTTGTCTCAGCATACG 59 NA Rattus norvegicus 81 Hdhd1 ENSRNOG00000025422 ENSRNOT00000037904 1 1 1 60 18 45380595 45380616 GTGTTTCAAGCAATATGCAGTC 59 45380556 45380575 CCAAGGACTTAACATCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scp2d1 ENSRNOG00000009461 ENSRNOT00000012524 1 1 1 60 3 138975260 138975280 AGACACCATCTTCATCATCCC 60 138975297 138975320 GTTCATCTTACCCACAACTAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp13 ENSRNOG00000008478 ENSRNOT00000011507 3 1 1 83 8 5524483 5524501 TTTCCTCCTGGACCAAACC 60 5524546 5526517 TAAGTTGTAGCCTTTGGAGCT 60 NA Rattus norvegicus 81 Slc14a2 ENSRNOG00000056021 ENSRNOT00000078519 2 1 1 80 18 74520073 74520765 AGGGACTTAAAGACAAATCTCC 58 74520014 74520034 TGTTCACAAACATCACCTGAG 59 NA Rattus norvegicus 81 Wasl ENSRNOG00000006975 ENSRNOT00000009261 3 1 1 82 4 51697162 51697834 CTGGAGATACTTGTCAAGTAGC 58 51697101 51697119 CAACAGGTCTGTAACTGCT 57 NA Rattus norvegicus 81 Foxi3 ENSRNOG00000006491 ENSRNOT00000008494 3 1 1 66 4 98776470 98776488 ACTGCTTCAAGAAAGTGCC 59 98779480 98779502 GGATCTAGAGTCCAGTAATTACC 58 NA DesignNoJunction Rattus norvegicus 81 Il20ra ENSRNOG00000012286 ENSRNOT00000050656 1 1 1 81 1 15212885 15214040 AGTCAGGAAGAACGTGGTC 59 15214085 15214103 ACACAGTACAGAGTGCTGG 59 NA Rattus norvegicus 81 Olr830 ENSRNOG00000013367 ENSRNOT00000017843 2 1 1 60 4 148665144 148665162 CCCGATGTACTTCTTCCTC 57 148665186 148665204 AACCGTGGAGATGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563293 ENSRNOG00000038076 ENSRNOT00000057933 2 1 1 95 13 93973785 93973804 CCATCTGAACACAGAGGAGG 60 93973861 93974198 CTTGAACACCTTGAGGAAGC 59 NA Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 1 2 2 80 1 101413103 101413121 GCAGAGAATGAGTTCTGCC 59 101413164 101413411 TACTCGAACCATGCTAGGAC 59 NA Rattus norvegicus 81 Ccin ENSRNOG00000014831 ENSRNOT00000019887 1 1 1 60 5 59453536 59453554 GTTTACTCAGTGGGTGGGA 59 59453575 59453596 CGTAGCGATAGATGTTAGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efs ENSRNOG00000042029 ENSRNOT00000022514 3 1 1 80 15 33583622 33583641 GACTCCATCTACAAGGTCCC 59 33583469 33583580 AGGCACATCATAGACCTCTC 59 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 1 2 2 80 15 57166039 57169057 TTCGTATAGTACAAACAGGCTC 58 57165980 57165998 TCACTAAAGCGCTTTCCTC 58 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 3 2 2 80 15 57169086 57169104 ACCCTTACCTCCAAAGCTC 59 57166027 57169042 GGTTCTCTAGCAGAGCCTG 60 NA Rattus norvegicus 81 RGD1562601 ENSRNOG00000048518 ENSRNOT00000048420 2 1 1 60 17 74679262 74679280 CTTTGTGAGGACTAACGGG 58 74679220 74679243 CATGAATTCGTACAGAATAGGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a13-ps1 ENSRNOG00000033714 ENSRNOT00000054806 2 1 1 86 1 227371459 227380195 ATTATGGACAAGCAAAGCTGG 59 227371393 227371411 AATATGTGAGGGCGACCAC 60 NA Rattus norvegicus 81 LOC362901 ENSRNOG00000031383 ENSRNOT00000040687 1 1 1 80 7 75565047 75565066 CCAAATCTGCAGGATCTCCA 60 75559707 75565010 CCATTTAGTAGGTTATAAGGTGTGG 59 NA Rattus norvegicus 81 Accsl ENSRNOG00000042533 ENSRNOT00000068585 2 1 1 80 3 82766414 82766432 TTCGGCTACCACCATAGTG 59 82764575 82766375 CTTATTGATCCACTCTTTGTCCTG 60 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 2 2 2 80 8 94841370 94841390 CTGACTATACCTGGGAATACG 57 94841431 94850097 CGATGGAATATTTGTGAGCC 57 NA Rattus norvegicus 81 Ssfa2 ENSRNOG00000005865 ENSRNOT00000008046 2 1 1 80 3 66616192 66616210 CATAGAGATGCAGTTGCGG 59 66616253 66618123 CCTCTCGTCATAGGGTACTG 59 NA Rattus norvegicus 81 RGD1309534 ENSRNOG00000010887 ENSRNOT00000014496 3 1 1 87 8 13845606 13846537 CTGGCAAGGTCATTGAAGTG 60 13845538 13845557 TAGTGCTTCTCCAGAGTCTG 59 NA Rattus norvegicus 81 AABR07027458.1 ENSRNOG00000049193 ENSRNOT00000074609 3 1 1 60 17 31947702 31947721 CTGCTTATCAGCATTGGAGG 59 31947661 31947680 GTACCAGGCTCTGACTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922,ENSRNOT00000077754 1 2 2 80 5 124526720 124526740 TATCGACATCATTCAGAGCAG 58 124526780 124533644 TCCACATATCCACTCTTACCC 59 NA Rattus norvegicus 81 LOC690435 ENSRNOG00000029253 ENSRNOT00000046749 1 1 1 80 6 128114784 128117533 ACTTGGCAACTAGACAGGG 59 128114722 128114741 AAGGCTTGTGTTTACTGAGC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340,ENSRNOT00000007710 1 2 2 80 5 86399603 86399621 GTTGCTGAAGCTCTTCTGG 59 86392889 86399562 TTCATTTCTCCAATCTGGTCAC 59 NA Rattus norvegicus 81 Vom1r9 ENSRNOG00000054409 ENSRNOT00000079558 2 1 1 60 1 60248749 60248767 GATGCCAGGAATTTGGGAG 59 60248788 60248809 CTAGAAGTCCAACTACACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 2 2 2 83 1 198089529 198091652 CAAGCAAACCCAGGAAGAG 59 198091699 198091717 TTCTCTGTCTGCATTCGCT 59 NA Rattus norvegicus 81 Tspan32 ENSRNOG00000026039 ENSRNOT00000054863 1 1 1 80 1 216192653 216192675 GAGACCACTTTACTGTAATTGGC 60 216192713 216193580 CCACATAGAAAGCCCAATAGC 59 NA Rattus norvegicus 81 AABR07072262.1 ENSRNOG00000060328 ENSRNOT00000075455 2 1 1 80 11 85561523 85561666 ATCACTTAACAGGGTCATGTG 58 85561706 85561726 GTTTGACTGTGCTTCCTAGAG 59 NA Rattus norvegicus 81 Alg6 ENSRNOG00000009045 ENSRNOT00000012052 3 1 1 80 5 118418864 118432420 TCTCAATTCTTACTCAGGTGC 58 118432461 118432480 AGGGTAATTTCTTGCCAGTG 58 NA Rattus norvegicus 81 Tgm2 ENSRNOG00000012956 ENSRNOT00000018328 2 1 1 80 3 154600760 154604607 CCCTACTCTGAGAACAGCA 58 154600698 154600717 CTTGATGAGGTTTGACTCGG 59 NA Rattus norvegicus 81 AABR07051563.1 ENSRNOG00000048070 ENSRNOT00000043097 2 1 1 85 3 17107901 17108122 GGGTATCTGGTACCTGTGG 59 17108170 17108189 GCTCATAGTGACCTTCTCCC 60 NA Rattus norvegicus 81 RGD1559459 ENSRNOG00000042714 ENSRNOT00000065079 1 1 1 80 14 22946427 22946446 GGACTTTCTCACGATGTCCA 60 22946486 22952557 GCATTCTCCTTATAGGAAGGGT 60 NA Rattus norvegicus 81 Lrrn2 ENSRNOG00000009691 ENSRNOT00000012844 3 1 1 264 13 49660618 49660637 ATACATATAGGACAGCGCCC 59 49727503 49727521 AAGATAGCAAGAGGGCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Apbb1ip ENSRNOG00000017803 ENSRNOT00000024272 3 1 1 80 17 90146492 90149131 TCTTGACCCAGAGTTTAGGAG 59 90146432 90146455 CCACACTGAAGTTAAACTCTTCTC 60 NA Rattus norvegicus 81 Fam184a ENSRNOG00000026407 ENSRNOT00000000475 3 1 1 80 20 34976731 34983140 CAATCAGGAGATTGACCGC 59 34976669 34976687 CTTGCAATGAGTCCTTCGG 59 NA Rattus norvegicus 81 RGD1563145 ENSRNOG00000029227 ENSRNOT00000051343 3 1 1 60 3 155192389 155192407 AAGAAGGGAGGCAGTTCTG 59 155192347 155192365 TCACAGGTCCTGTTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103693822 ENSRNOG00000059282 ENSRNOT00000080898 3 1 1 60 15 27590455 27590474 TTCTGGTATCATCATGCTGG 58 27590414 27590433 ATGGAGAAGACAGGGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561465 ENSRNOG00000048439 ENSRNOT00000075506 3 1 1 60 5 150994749 150994767 CATCAAGAACACGTCGCAG 60 150994707 150994725 GGTGGTAACACCTCGAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC678816 ENSRNOG00000033808 ENSRNOT00000043108 2 1 1 60 18 69818817 69818835 TAAAGTTCAAGGTCCGCTG 58 69818856 69818877 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdzd2 ENSRNOG00000013140 ENSRNOT00000017937 2 1 1 80 2 62634629 62634650 GAACTTGGCTGTGTATGAGAG 59 62634569 62634589 TTGGTGAGATACACCGTACAG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 2 2 2 81 7 66863070 66881567 CTTCAGCTCCAGAGGTCAG 60 66863007 66863026 CCATCAGTAGCCAGGATCAG 60 NA Rattus norvegicus 81 Olr1291 ENSRNOG00000052671 ENSRNOT00000083163 3 1 1 60 15 35629953 35629974 GACAGAGAAGAACATCATCTCC 58 35629991 35630013 AGTGATGAAGAAGTAGAGCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000088089,ENSRNOT00000008886 3 3 3 80 6 126140932 126140952 CTTCATGGTCACCTTCATCAC 59 126140992 126146545 CCAATAATAGTCACCAGCCAC 59 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214,ENSRNOT00000077362 3 2 2 80 2 189876932 189877058 CTAGAACAGCAGGATATGGTC 58 189877100 189877118 AAGGATCTTCCGAAAGCCT 59 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549,ENSRNOT00000080834 3 2 2 80 11 73181419 73181438 TGTGAACCAAAGAGATGTCC 58 73181479 73182685 AATAAACATACCTGCCCTGTG 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 1 2 3 80 5 159956689 159957079 AACAGTGAACAGGAGACCA 59 159956627 159956649 GAAGATCTCTGGTAAGTCAAAGG 59 NA Rattus norvegicus 81 Por ENSRNOG00000001442 ENSRNOT00000001961 2 1 1 84 12 24000235 24000965 AAACAATCTCGATGAGGAGTC 58 24000171 24000189 GTCCAGGTAGTAGGTGAGG 58 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600,ENSRNOT00000041639 1 2 2 80 14 77338363 77338381 AGGCAACCTTCAGACTCAC 60 77338425 77340518 GCTGCAAACCTCTTTCCAC 60 NA Rattus norvegicus 81 Nisch ENSRNOG00000018823 ENSRNOT00000036910 1 1 1 80 16 7274580 7274599 GGACCAGCAATATTCGAGAG 58 7273190 7274537 AGTGACTCATCTCCACCTG 58 NA Rattus norvegicus 81 AABR07052798.1 ENSRNOG00000046348 ENSRNOT00000071912 1 1 1 60 3 75769021 75769040 CCGATGTTGAGTGTATGCTG 59 75769063 75769081 TTGCTGATTGCCTTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chtf8 ENSRNOG00000047246 ENSRNOT00000070822 1 1 1 80 19 39080435 39080853 TTACACCACTGAGGGAATCC 59 39080374 39080392 AAAGGTTTCTCCAGGTGGA 59 NA Rattus norvegicus 81 Sh2b2 ENSRNOG00000001425 ENSRNOT00000001935 3 1 1 113 12 23491638 23491656 CTTCCAGACCCAAGGTCAG 60 23491733 23493559 CTCCGTTCTCCACCTTGAG 60 NA Rattus norvegicus 81 Psg29 ENSRNOG00000029485 ENSRNOT00000043333 2 1 1 80 1 79237299 79238272 TTATGTAACCAAGCCTGTGAC 58 79237239 79237258 GTGAAGGTCACAGATCTGTG 58 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802,ENSRNOT00000066101 1 2 2 80 3 116945564 116946035 CTCTTTGCTGATGGGAAACTG 60 116946075 116946095 ACCCATGCTTCTGTAAATGAC 59 NA Rattus norvegicus 81 LOC100912427 ENSRNOG00000030807 ENSRNOT00000058700 3 1 1 60 1 186640585 186640603 ATCAAGGAGATGAGACCCA 57 186640543 186640561 TTGAAGTTGCAGCGATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etl4 ENSRNOG00000008666 ENSRNOT00000073718 1 1 1 80 17 87658801 87662173 AAGTTACGTGAGCTGGAGG 59 87662216 87662235 ATCTTTCAGGGTCACCACTC 60 NA Rattus norvegicus 81 rno-mir-350-1 ENSRNOG00000048587 ENSRNOT00000074854 1 1 1 60 13 94849874 94849892 TAAAGTGCACGTGCTTTGG 59 94849832 94849852 TGAAAGTGTATGGGCTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 3 2 2 80 14 83092688 83092708 AGATAAATATTCTGCCTCCGC 58 83092508 83092647 AGAAACACTGTTCCTGTGAC 58 NA Rattus norvegicus 81 Wbp4 ENSRNOG00000011678 ENSRNOT00000015605 3 1 1 80 15 61764538 61768085 TGCAGTCAGACATTTCAGAG 58 61764477 61764498 CTTTCTGTTGATTTGCTGTAGG 58 NA Rattus norvegicus 81 Ndufa10 ENSRNOG00000016470 ENSRNOT00000022089 2 1 1 80 9 99642501 99642522 GCAGTCATCTATATCGATGTGC 59 99641195 99642464 GACCTTCATTTCATGTGGATCTC 60 NA Rattus norvegicus 81 Aqr ENSRNOG00000008912 ENSRNOT00000011952 1 1 1 80 3 105585809 105587787 CTCAGCTTGAGGAATTCAGAG 59 105585749 105585767 TGGCTTCTTTCACCAAGAG 58 NA Rattus norvegicus 81 Foxb2 ENSRNOG00000032137 ENSRNOT00000052350 3 1 1 92 1 237066950 237066968 GTCTCAGTTCCCACCTACG 60 237067028 237067047 TTCTCTATAGCGAACGGGTG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07014974.1 ENSRNOG00000052298 ENSRNOT00000063985 2 1 1 80 14 42008944 42008967 GAGATTCCTCTATTCTCAGTTCAG 58 42009005 42009910 ACATCAGGAATTTGCTGGAG 58 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 3 1 1 92 8 76450875 76452409 AGCCAAGAAGGTATCAAAGAG 58 76450803 76450822 GAACCTCCTCCATGAAACCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871,ENSRNOT00000051512,ENSRNOT00000044972 1 3 3 80 13 49381480 49381499 GTGATCCTTTACAACCGGAC 59 49381122 49381439 CCCATTCTTAAACCATCGGAG 59 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000054539 ENSRNOT00000079880 3 1 1 83 17 44763829 44763847 GACTTCAAGACCGACTTGC 59 44763892 44763912 AAATAGACCCACAAGGTAGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911109 ENSRNOG00000048056 ENSRNOT00000065052 2 1 1 80 3 151611630 151611769 TGACTCTAAGCCAATACCACC 60 151611809 151611829 GGAGTTTACTCAGTTCTGCCT 60 NA Rattus norvegicus 81 Sco1 ENSRNOG00000028699 ENSRNOT00000044116 1 1 1 82 10 53599811 53599829 TTTGGCTTCACTCATTGCC 59 53599871 53600518 GGAATACTGTCTATTTCCTCCAC 59 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 2 2 2 80 1 72894992 72895260 GACTTTGATGACATTCACCGG 60 72895302 72895320 CTGCTCAAAGTGCACATCG 60 NA Rattus norvegicus 81 Slc22a18 ENSRNOG00000020562 ENSRNOT00000027925 1 1 1 80 1 216678303 216678323 CATCATACTCACCTATGTGCT 57 216678362 216681481 CGAGACAGATATGGTATGATGG 58 NA Rattus norvegicus 81 Slc16a8 ENSRNOG00000012090 ENSRNOT00000016247 1 1 1 137 7 120489132 120489290 CTTTGCAGGAAGCAGAAGC 60 120489013 120489031 CCTTAGGGAAGCCATAGGC 60 NA InUTR Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 2 1 1 60 12 24723036 24723175 CTTAGCTCGGTTGTCAAGGA 60 24722995 24723013 CCTCCACCAGGTTAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 1 4 4 94 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503412 105503430 GATTCATGGGTGACAGCTG 59 NA Rattus norvegicus 81 Crygs ENSRNOG00000038355 ENSRNOT00000058402 3 1 1 80 11 81801191 81801803 TTCATCTGTCTAGTGGAGGC 59 81801846 81801864 CCGTGGTTTCGTACATCTG 59 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 3 2 2 80 3 11353111 11353129 GACTTCATAGGCTTTGCCA 58 11352637 11352881 AATCTCATCCTGGTTCCCT 58 NA Rattus norvegicus 81 Lmnb2 ENSRNOG00000025742 ENSRNOT00000022336 1 1 1 80 7 11661191 11668566 TTACCACTCGTGAGGTGAG 59 11668610 11668628 CTGTCTCATCCAGTACCCG 59 NA Rattus norvegicus 81 Stx1a ENSRNOG00000029165 ENSRNOT00000049601 3 1 1 80 12 24696686 24696973 TGAGTTCTTTGAACAGGTGGA 60 24696626 24696645 TGTTTCCTCTTCACCTCCTC 59 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814,ENSRNOT00000081649 1 2 2 80 10 72319179 72319198 GAAATGCCTGTATTGCTGTG 58 72309993 72319138 CCTCTACAACTCTTTCCTGTG 58 NA Rattus norvegicus 81 AC107580.2 ENSRNOG00000053351 ENSRNOT00000089754 1 1 1 80 X 123866181 123866199 GCTTCCTCAGTGTAGAAGC 58 123862784 123864131 TCCGAAACCATCTCTTCAC 57 NA Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485 3 1 2 96 20 3891808 3891998 TACCCGCAGGTAACTTCTG 59 3892058 3892076 CCACACTGTAATAGGCTGC 58 NA Rattus norvegicus 81 Gjb3 ENSRNOG00000014372 ENSRNOT00000019266 1 1 1 60 5 145391489 145391507 TCTGCTACCTCATCTTCCA 57 145391447 145391465 CTCTTCGTCGATTTGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slain1 ENSRNOG00000024125 ENSRNOT00000065710 1 1 1 80 15 87888816 87896157 GACCAATGGAGATAAACTACGA 58 87896198 87896216 CTGAGGTTGCTACTGACTG 58 NA Rattus norvegicus 81 Mrgprx2 ENSRNOG00000033665 ENSRNOT00000049722 2 1 1 80 1 103745665 103760738 AATGGAGGAAAGAAACATCAGC 59 103745606 103745626 AGAGCTGTGATGTTAGTTCCC 60 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 3 2 2 80 20 27433341 27433359 TTTCAGTGAGCCTGTTCCT 59 27433403 27436559 TTAGTGTTGTGCGAACCTG 58 NA Rattus norvegicus 81 Sesn2 ENSRNOG00000042785 ENSRNOT00000067455 3 1 1 80 5 150690265 150690288 CGTTTGGATATGAAGACTTCACTC 60 150689926 150690229 GGTCTTCCCAGGTATAATCCTG 60 NA Rattus norvegicus 81 LOC684841 ENSRNOG00000049198 ENSRNOT00000074024 1 1 1 81 17 43791889 43791907 ACTTCAAGACCGACCTTCG 60 43791952 43791970 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd9 ENSRNOG00000008056 ENSRNOT00000010610 3 1 1 86 6 135412223 135412241 TTCATAGTGCCCACCTCTG 59 135411818 135412173 GAATGAGCTCCTGGGACAG 60 NA InUTR Rattus norvegicus 81 Vom1r27 ENSRNOG00000049847 ENSRNOT00000072292 1 1 1 60 1 68529650 68529668 CTCACCAGAATCTCAAGCC 58 68529692 68529710 AAATGCCAGGAAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nuak2 ENSRNOG00000000034 ENSRNOT00000000039 1 1 1 80 13 49101083 49103858 TCCATGAAGTGTTTGAGAACAG 59 49103897 49103917 TGATGTAATCGTACAGATCGC 58 NA Rattus norvegicus 81 AABR07050637.1 ENSRNOG00000048616 ENSRNOT00000075354 1 1 1 60 5 171825997 171826015 ACCTACGAGAAAGACCCAG 58 171826036 171826057 TACCTTCTGTGTAATCATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr458 ENSRNOG00000058782 ENSRNOT00000077865 3 1 1 60 3 73162022 73162043 CTCTATTCAAGCATCATGTCCA 58 73162064 73162082 CTACATAGGAGCCAGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpgr ENSRNOG00000003013 ENSRNOT00000067603 1 1 1 80 X 14314850 14317253 CAGCTTTGATGACAGATATAGGC 60 14314792 14314811 AATTCTCCATTCCAAGCCCT 59 NA Rattus norvegicus 81 Olr3 ENSRNOG00000015254 ENSRNOT00000020448 1 1 1 60 1 70437933 70437951 TCATCGTCTTGCTCACCAG 60 70437974 70437993 CGAAGGAAGAAGTACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1612 ENSRNOG00000012545 ENSRNOT00000016727 2 1 1 60 15 27139863 27139881 TTATGCTCGCCCATTTGAC 59 27139821 27139844 CACAGTATGAAACACAGATACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trem3 ENSRNOG00000013748 ENSRNOT00000018500 3 1 1 82 9 14714822 14714841 GGCTTCATACTGAACAAGGG 59 14714310 14714778 GAAGGCTGTAACACCTTAGG 58 NA Rattus norvegicus 81 Sdr39u1 ENSRNOG00000020544 ENSRNOT00000064643 3 1 1 80 15 34565846 34565864 CCACTTGCTAGCTAAAGCC 59 34565021 34565804 TGGTAGTAAGCTACACCTGTG 59 NA Rattus norvegicus 81 Olr1621 ENSRNOG00000008800 ENSRNOT00000011632 3 1 1 60 15 27422436 27422455 TTGTATCTGCTGGGTGAGTG 60 27422476 27422496 TTGGGAGATGAGGATAATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp422 ENSRNOG00000013379 ENSRNOT00000018050 1 1 1 209 4 148761417 148761435 TCTCCGCCTCTTCCTAGAG 60 148759419 148759438 CCCTTAGGCTTTCCTAACCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Wwc1 ENSRNOG00000008065 ENSRNOT00000011061 1 1 1 80 10 20712861 20713159 TCTCTGGGAGTTTCAGCAC 59 20712799 20712818 TCTTTGCCTCTTCATACCGA 59 NA Rattus norvegicus 81 Olr360 ENSRNOG00000013077 ENSRNOT00000017444 2 1 1 60 1 230115250 230115271 CACCTTCTTCCTCATCTATACC 58 230115211 230115230 AATCAACAGGATCAAACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrd ENSRNOG00000001750 ENSRNOT00000002394 3 1 1 80 11 83864472 83864491 GGTCCTAGAGAAGATGGGTG 59 83864267 83864431 CTTTGAAGGACATCACAGCTC 59 NA Rattus norvegicus 81 Vom2r9 ENSRNOG00000013671 ENSRNOT00000029537 3 1 1 82 1 55867488 55868547 CTTTCCTTGGCAGCTTCAC 60 55867424 55867445 CAATGAACCTCCATTTCCACTC 60 NA Rattus norvegicus 81 Ldlrad2 ENSRNOG00000033503 ENSRNOT00000055947 3 1 1 153 5 155914959 155915961 GAAGTGTTGGAAGGTCCCT 59 155914824 155914842 TACAAGCTGCACAACACCT 60 NA Rattus norvegicus 81 LOC100359587 ENSRNOG00000049342 ENSRNOT00000060304 2 1 1 94 15 31141178 31141291 TTTCTCCTGAGAGTTGCCC 59 31141349 31141367 TACTTGCATCTCAGCTGCA 59 NA Rattus norvegicus 81 Tas2r138 ENSRNOG00000026225 ENSRNOT00000031345 2 1 1 60 4 68831948 68831967 ATGAAAGACCCACTAAGCCA 59 68831907 68831925 GGTTTGCGATCATCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr816 ENSRNOG00000005431 ENSRNOT00000007200 3 1 1 60 4 72567003 72567022 TATGCTTCCAACAATGTCCC 58 72567042 72567063 AGATGGTTCTTCTTTGAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usb1 ENSRNOG00000013216 ENSRNOT00000017960 1 1 1 80 19 10109172 10109190 CCTGGACATGGTTTCAGAG 58 10107836 10109129 ACATGAAATGAAGGGTCCTG 58 NA Rattus norvegicus 81 Mir142 ENSRNOG00000035633 ENSRNOT00000053756 3 1 1 60 10 75050848 75050870 GTCACCCATAAAGTAGAAAGCAC 60 75050885 75050908 TAAAGTAGGAAACACTACACCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il20 ENSRNOG00000004633 ENSRNOT00000067006 1 1 1 80 13 47644577 47645621 TTCACAGAGCTTGAGCTCC 60 47644515 47644535 CATCTCCTCCATCCATCTCAG 60 NA Rattus norvegicus 81 Sash3 ENSRNOG00000004409 ENSRNOT00000006035 2 1 1 81 X 134992322 134992340 AGCTCAACATCATGGACCC 60 134992384 134992902 TCACTGCCAGTGTCATAGTC 60 NA Rattus norvegicus 81 Npc1 ENSRNOG00000012016 ENSRNOT00000016167 1 1 1 80 18 3620998 3621018 CATGTTTGGTGTTATGTGGCT 60 3620227 3620957 GAAATGCCACAGGTCATCAC 60 NA Rattus norvegicus 81 LOC100912097 ENSRNOG00000019594 ENSRNOT00000026503 3 1 1 60 1 171095336 171095357 AAACCAGACAAGAGTAACTGAG 58 171095375 171095396 TATTTCAGTAGGCAGGGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam1 ENSRNOG00000020679 ENSRNOT00000028066 1 1 1 80 8 22045498 22045612 TGTGCTATATGGTCCTCACC 59 22045654 22045673 GTAAGAGTCTGCTGAGACCC 60 NA Rattus norvegicus 81 AABR07062129.1 ENSRNOG00000048726 ENSRNOT00000010098 1 1 1 84 4 162300257 162300275 ACTGGACATTGAGCCAGAC 60 162300320 162300907 CTTAGGAAATTCAGCTCCTCCT 60 NA Rattus norvegicus 81 Fastk ENSRNOG00000011667 ENSRNOT00000064893 3 1 1 81 4 7263695 7263819 AAATACAGTCACAAGGACATGG 59 7263861 7263879 GTACAGTCAGGTCCTGACG 60 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 1 3 3 80 18 70623818 70632435 ATGAGGAGTGTAAGGTCCC 58 70632479 70632497 AGTGTTGACTGTTGGAGTG 58 NA Rattus norvegicus 81 Unc5b ENSRNOG00000000567 ENSRNOT00000038537 1 1 1 80 20 30357296 30357315 AGGTACCCTTGGATCATGAG 59 30356380 30357253 TCTTGAGCCATTCCACCTC 59 NA Rattus norvegicus 81 Rac2 ENSRNOG00000007350 ENSRNOT00000009994 2 1 1 83 7 119788690 119788709 CCATTGAGAAGCTGAAGGAG 58 119785042 119788647 TCACTGAATCAATATCCTTGGC 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 2 2 3 120 9 111244241 111244259 CTTTGATTTGTTACGCGCC 58 111244342 111244704 CATCACGATATTGCCAAGGA 58 NA Rattus norvegicus 81 Rexo1 ENSRNOG00000017916 ENSRNOT00000024080 3 1 1 80 7 12039851 12039869 GCGTACCTTCCAGAAGGAG 60 12039908 12040264 TATGTAGTGTAGGACATCTCACAG 59 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055,ENSRNOT00000080035 2 2 2 80 13 47962050 47962070 ACCATACAGGAGATCAAGCAG 60 47961173 47962010 ATCTTCACTCAACTTCATGCC 59 NA Rattus norvegicus 81 Mir146a ENSRNOG00000035466 ENSRNOT00000053589 3 1 1 60 10 28962534 28962554 TGAGAACTGAATTCCATGGGT 60 28962494 28962515 CAGCTAAAGAACTGAACTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r109 ENSRNOG00000056653 ENSRNOT00000088203 2 1 1 60 1 63264316 63264336 TCCAGTACATCCATGATTGTC 58 63264357 63264376 TGTGAATGTGTTGAACCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499573 ENSRNOG00000033449 ENSRNOT00000041334 3 1 1 80 2 95084403 95098615 AGAATTTGGACAGTGCTCAC 59 95084342 95084360 AGTATAGCTGCTGTGAGGT 58 NA Rattus norvegicus 81 Abhd4 ENSRNOG00000009244 ENSRNOT00000012837 1 1 1 80 15 32904854 32904873 AATACCTGGATCGACACCAG 59 32904916 32905479 CTCGATCTCCATGTCTCGG 60 NA Rattus norvegicus 81 Rn60_2_2053.2 ENSRNOG00000017461 ENSRNOT00000023482 1 1 1 60 2 185805666 185805688 CATCTTAGAGAACAAAGCAGTGG 60 185805628 185805646 AGTAGAGACAGCCTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448,ENSRNOT00000045050 1 2 2 80 14 36200927 36200947 AGTGACGATGATGAAGATGAC 58 36198061 36200887 TGTTCCATAACTCCCATACTG 57 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528,ENSRNOT00000046854,ENSRNOT00000087320 3 3 3 83 13 51035576 51037790 CCAGGAGATCACAGAAGCC 60 51037837 51037855 TTGACAGACTCTCCCACCT 60 NA Rattus norvegicus 81 Sgpl1 ENSRNOG00000000565 ENSRNOT00000084391,ENSRNOT00000065127 1 2 2 80 20 30707557 30708849 ACTCCAGAAATTGTGGCTC 58 30707495 30707514 GCGTACAATCTTCATTCCGA 59 NA Rattus norvegicus 81 Acer3 ENSRNOG00000036866 ENSRNOT00000019987 2 1 1 80 1 163216305 163216323 TTTGGTGCAATTCAAGGCT 59 163212215 163216262 CATTCCTACCACTGTGAGTG 58 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000083231 3 2 5 114 20 4043788 4043807 TTAGAGATGGCTCTGCAGAC 59 4043883 4045246 GGAATACGAAATCCCTTGGG 59 NA InUTR Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000086283 1 2 5 102 20 4045455 4045473 CAACTACGAGGAGACGGAG 59 4046884 4046902 CAAGTTGTGGTGGTTGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Mos ENSRNOG00000008567 ENSRNOT00000011602 3 1 1 61 5 16746797 16746818 CCTTGGTACCATAATCATGGAG 58 16746757 16746775 CACCGTAGATGACTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3120 ENSRNOG00000035513 ENSRNOT00000053636 3 1 1 65 13 80130993 80131011 CTGGGTTGTCATGTGACTG 59 80130946 80130964 CTTGCTGTGCAGAACATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup133 ENSRNOG00000017919 ENSRNOT00000024182 1 1 1 80 19 56710243 56711609 TCGATACACAAGGAGACGG 59 56710181 56710200 CCAGACCACTGTTCCTAGAG 59 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467,ENSRNOT00000029615 3 2 2 80 15 4162008 4165490 TGTCTACAGGGATCAAAGCA 59 4165532 4165551 CTACTGCTGTGAGACTTTGG 58 NA Rattus norvegicus 81 Cfap43 ENSRNOG00000036585 ENSRNOT00000031925 2 1 1 80 1 267572035 267573591 TTCTGGAATTGACGGTGTG 58 267571973 267571992 CCATCAAACTCAAGGAAGGG 59 NA Rattus norvegicus 81 Klrb1 ENSRNOG00000057410 ENSRNOT00000084289 1 1 1 80 4 162787903 162789154 GGACTCAGTGTCTTAGTGGG 60 162789195 162789215 AGTCTTGTTCTCTTGAACAGC 59 NA Rattus norvegicus 81 Lrrc42 ENSRNOG00000009983 ENSRNOT00000013575 2 1 1 80 5 126850326 126850347 GCTTTACAGAAATTCACTGAGG 58 126843429 126850285 TGCAACCACCAAATACCTG 58 NA Rattus norvegicus 81 Ncaph ENSRNOG00000012051 ENSRNOT00000016157 2 1 1 80 3 119594938 119594958 ACTCTTCCTGCAGATTTCCTC 60 119592033 119594899 CATCTTAAGCGACCTTATGTCC 59 NA Rattus norvegicus 81 Smarca1 ENSRNOG00000003762 ENSRNOT00000068478 3 1 1 80 X 134688561 134690331 GATTTACAAGCTATGGATCGGG 59 134688502 134688522 TGTGTTGTCTGTAATGAGACG 58 NA Rattus norvegicus 81 Tspan15 ENSRNOG00000046204 ENSRNOT00000075714 3 1 1 80 20 31813851 31813872 CCGTACTGATATGGTTCATGGA 60 31813329 31813811 CACCAAGAAACTGAGGAAGC 59 NA Rattus norvegicus 81 Upk3a ENSRNOG00000013593 ENSRNOT00000018365 2 1 1 80 7 125921240 125921259 GTGCATGTTCGATAGCTCAG 59 125921300 125922238 CAGGAGATAGCTGAGTCTACC 59 NA Rattus norvegicus 81 Mettl16 ENSRNOG00000002764 ENSRNOT00000003750 3 1 1 80 10 61643272 61648592 CTCATCAAAGTGGTGAAAGTG 58 61648629 61648652 GAAGTCATAGACTATCTCAGACTC 58 NA Rattus norvegicus 81 Spag6 ENSRNOG00000025787 ENSRNOT00000022328 2 1 1 82 11 88424672 88424690 CAATTCGTGCAGATGGTGG 60 88424735 88442888 AGCAAAGACATTACACCTGC 59 NA Rattus norvegicus 81 Olr725 ENSRNOG00000006716 ENSRNOT00000008762 1 1 1 60 3 78836731 78836751 CTGTGGCTGTGTTCTATACTG 59 78836771 78836791 CTGAGGGTGTAGATTAAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047694.1 ENSRNOG00000053101 ENSRNOT00000077885 2 1 1 62 5 43469364 43469382 TTTCAGGTTTACTTGGCGT 58 43469408 43469428 CATTATTATCCAGCCCGCA 58 NA DesignRelaxed Rattus norvegicus 81 Nubp1 ENSRNOG00000002574 ENSRNOT00000003479 2 1 1 80 10 5336609 5337101 TCTCCAGTGTATGTGGAGG 58 5336547 5336565 CCAGATGACAGCATCATCC 58 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166,ENSRNOT00000082791 3 2 2 89 4 109474247 109474267 ATTATCTTTGTGTCCTCCCTG 58 109473598 109474197 CATTGTGCCATGTGAAAGAC 58 NA Rattus norvegicus 81 Acot11 ENSRNOG00000007837 ENSRNOT00000010396 2 1 1 80 5 126352525 126352543 ACCTTGTGTCCTGTAAGCA 59 126352174 126352485 TGTAATAGCTCAGGTATACCTGG 59 NA Rattus norvegicus 81 Chd4 ENSRNOG00000018309 ENSRNOT00000055970 3 1 1 80 4 157635881 157635995 ACGAACGATCAGAAGCTCC 60 157636039 157636057 CCAGCAGAGGAGGTAATGG 60 NA Rattus norvegicus 81 Lrrc47 ENSRNOG00000024796 ENSRNOT00000034284 2 1 1 80 5 171305030 171305441 CTGCACAGATACCTTCACC 58 171305485 171305503 GAAAGAGATCACGTCTCCC 57 NA Rattus norvegicus 81 Ndc1 ENSRNOG00000010620 ENSRNOT00000014275 1 1 1 80 5 127003819 127003838 GATTTGGAGTTGTCCAGACC 59 127003878 127017698 TGAAGTATTTGTCAACAGCCTC 59 NA Rattus norvegicus 81 Gng5 ENSRNOG00000038205 ENSRNOT00000058172 2 1 1 60 1 78546121 78546140 AGTTCTGTCTGCAGAATGCT 60 78546160 78546181 TTTGTACTTGAAGACACTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp8 ENSRNOG00000010729 ENSRNOT00000015124 3 1 1 80 3 119215839 119217552 CACGAGGATCTAAATAAGGCTG 59 119217593 119217611 TGCCGCTTTAAAGTCATCG 59 NA Rattus norvegicus 81 Zfp639 ENSRNOG00000043053 ENSRNOT00000065518 1 1 1 97 2 118910630 118912493 CTTCTCGATATTCAGATTCTTCTGG 59 118912545 118912566 CTGTCTCATAGAGCAAACACTG 59 NA Rattus norvegicus 81 Dazap1 ENSRNOG00000031387 ENSRNOT00000046886 2 1 1 87 7 12299750 12300413 AAGTTTGGAGTGGTCACAG 58 12297122 12297143 CGTCCTCGAAAGTAATAAATCC 57 NA Rattus norvegicus 81 March6 ENSRNOG00000011066 ENSRNOT00000028561 2 1 1 80 2 84570801 84571697 GCTTACTTGGGAAAGAATGCT 59 84568915 84568935 GTGTTTAACGATACCACCCAG 59 NA Rattus norvegicus 81 Nle1 ENSRNOG00000008287 ENSRNOT00000011320 2 1 1 80 10 70255825 70255844 GGGTCCTTAGCATATCCTGG 60 70255621 70255782 GGTCCCACAGGAGAATCTG 60 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 2 1 2 144 2 86474439 86475032 AAGGACCTTCTGTCATTTACAG 58 86473686 86474335 TAGAGAAAGCAAGACCCAGG 59 NA Rattus norvegicus 81 Nsun5 ENSRNOG00000001450 ENSRNOT00000001970 2 1 1 109 12 24346689 24346817 CAACTTCCAGAATCTGAAGCA 59 24346600 24346618 TCTTCTCAGCACGAAGGAG 59 NA Rattus norvegicus 81 LOC100911163 ENSRNOG00000030018 ENSRNOT00000028058 2 1 1 80 15 35393048 35393069 TCCAACGTTCTTACATCAAAGC 60 35392407 35393010 CAGAATCTTCCTCAAAGGAAGC 59 NA Rattus norvegicus 81 LOC686209 ENSRNOG00000047452 ENSRNOT00000074907 3 1 1 60 5 137776426 137776445 TCATCTTGCTTCTGATCCCA 59 137776462 137776486 GCTATAAAGATCCGAACATATGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsc2 ENSRNOG00000000282 ENSRNOT00000041975 2 1 1 89 11 87221219 87221238 TACAGAACCAGTATCCCGAC 59 87221290 87222035 TCTTGAACCAGACCTCCAC 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 1 3 3 80 1 82558669 82563480 GAAGCCACCTTGAACAGTC 59 82558607 82558626 CACCTTATGCCGATCTACCA 59 NA Rattus norvegicus 81 Tdrd12 ENSRNOG00000012719 ENSRNOT00000017021 3 1 1 80 1 91743469 91749717 AAGCCAGACTTCGATACCC 59 91743407 91743427 CTTTCTGTACCTCTGTCTCCT 59 NA Rattus norvegicus 81 Sumf2 ENSRNOG00000000922 ENSRNOT00000001224 1 1 1 80 12 30483381 30486514 AAAGACTTCAGGGAGTTTGTC 58 30483321 30483339 ATCCTCAAAGACGAAGCTC 57 NA Rattus norvegicus 81 Pabpn1 ENSRNOG00000042195 ENSRNOT00000021096 1 1 1 80 15 33558313 33558334 TCTCAGACAAAGAGTCAGTGAG 60 33558373 33558477 TGGGAATCACCTTGATTTGTC 59 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 2 2 2 80 5 173375165 173377742 ATTCTGCCAGAAAGATGAGC 58 173377783 173377803 GAAGGTAGTCCTGTTTCAACC 59 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000021156,ENSRNOT00000079745 1 2 2 80 2 123277059 123277077 TTGCCATCGCTTATTGCTG 59 123276680 123277015 TACCAATGACTCAGGCCAG 59 NA Rattus norvegicus 81 Csf3 ENSRNOG00000008525 ENSRNOT00000011509 1 1 1 80 10 86618428 86618446 TCATACCTGCAGAGCTTCC 59 86618491 86618510 TTCTGGAAAGTGCTTCTGC 58 NA Rattus norvegicus 81 St6galnac4 ENSRNOG00000048870 ENSRNOT00000072685 1 1 1 80 3 11616300 11617601 GCTACTGCAGTGAGAAGAG 58 11617644 11617663 GGTACATCTGACACTCATCC 58 NA Rattus norvegicus 81 Olr728 ENSRNOG00000051785 ENSRNOT00000049936 2 1 1 64 3 78877467 78877487 ACCCTCAGAAATGAGGAAGTC 60 78877511 78877675 TGAGATTTCCTCATTTGACCC 58 NA DesignNoJunction Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 2 3 3 80 20 3991813 3991961 GCAGGAAGTTACATTGCTACC 59 3992003 3992021 ACAACCAGACATGGTTCCA 59 NA Rattus norvegicus 81 AABR07051532.1 ENSRNOG00000049009 ENSRNOT00000047784 1 1 1 60 3 16440999 16441017 CACTTCTGCTATGGGTGCT 60 16440725 16440745 GTCAAGACAATGTCACCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Ginm1 ENSRNOG00000015239 ENSRNOT00000020810 3 1 1 81 1 1877166 1879487 CAGACTTCGATAGTGAAGAGTG 58 1877106 1877130 GTAAGATCCTTACAGTGACTATTCC 59 NA Rattus norvegicus 81 Olr70 ENSRNOG00000015673 ENSRNOT00000020981 2 1 1 60 1 168160196 168160214 TATGGGCTCTTTGTTGTGG 58 168160154 168160176 ATGAGAGGAATATGAGTAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ehhadh ENSRNOG00000001770 ENSRNOT00000002410 2 1 1 81 11 82955825 82955843 CCAGAAAGCTGGATCAGAC 58 82955888 82959740 GATATCAGCACCTGCACAG 58 NA Rattus norvegicus 81 LOC100910152 ENSRNOG00000033045 ENSRNOT00000044446 3 1 1 75 4 170767146 170767164 GAGGGACAACAAGAAGACG 58 170767203 170767221 CTTGTTGAGCTCTTCGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcee ENSRNOG00000016327 ENSRNOT00000021884 2 1 1 85 1 125239751 125239769 GAGTGATAGTCCGATCGCA 59 125239816 125252401 CATTTATGTTGTCCACCTCGA 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138,ENSRNOT00000016221 3 2 2 80 10 13965280 13965299 AAGGGACAACTTCAAGAGCA 60 13965000 13965239 TGTAGGAACACAAAGCTAGGG 60 NA Rattus norvegicus 81 Sfta2 ENSRNOG00000048987 ENSRNOT00000074460 1 1 1 65 20 3605595 3605613 GATGTGCCTCTTCCTCCTC 60 3605339 3605357 AAAGTCACCTTTGTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Gng4 ENSRNOG00000047080 ENSRNOT00000070807 3 1 1 80 17 90290089 90290107 TAGAGCAGCTGAAGATGGA 58 90269524 90269542 CTTCACAGTAGGCCAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Prkag3 ENSRNOG00000017248 ENSRNOT00000023365 2 1 1 80 9 82001797 82004110 TCAATGAATCTGGTCAAGTCG 59 82001599 82001619 GGTGGTTGTAAGTTTGTTGTG 58 NA Rattus norvegicus 81 Hcrtr2 ENSRNOG00000011251 ENSRNOT00000015824 3 1 1 81 8 83343441 83347465 CCTTATTTACAGACTGTGTCAGTG 60 83343383 83343401 GACAAATGGCGTACCATCG 59 NA Rattus norvegicus 81 Ntpcr ENSRNOG00000019922 ENSRNOT00000026965 2 1 1 80 19 58576195 58578830 AGGTGTTCAGTGTCACCAG 60 58578874 58578892 TTTAGGACCTGCTGCTCTG 59 NA Rattus norvegicus 81 Dpcr1 ENSRNOG00000042287 ENSRNOT00000068159 2 1 1 80 20 3612009 3612029 TGGCCTCTATCCTATGTTTGG 59 3612070 3617931 TGAAATGTGTTAGCACCTGC 59 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140,ENSRNOT00000018452,ENSRNOT00000018272 1 3 3 80 1 231457055 231458352 GATCACCAAAGAGACAGAGAC 58 231415726 231415745 CCTGTGTTTCTCAGAACCTC 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122,ENSRNOT00000085899 1 2 2 80 7 12161993 12164215 CCGACTCCTTTAGTGGACTC 60 12164258 12164276 CCTCGTCCTCTTTCTCCTC 59 NA Rattus norvegicus 81 Hist1h2ah ENSRNOG00000049649 ENSRNOT00000013790 1 1 1 60 17 43632619 43632637 AAGAAGACACGCATCATCC 58 43632661 43632679 TGAGTTCCTCATCGTTCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362916 ENSRNOG00000030110 ENSRNOT00000050944 2 1 1 60 15 28051321 28051340 ACAGCTATGTTCAGTTCCAC 58 28051361 28051381 TTCATGTCCTCTATGCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684762 ENSRNOG00000045646 ENSRNOT00000072119 2 1 1 82 17 43633907 43633925 ACTTCAAGACCGACCTTCG 60 43633970 43633989 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 3 3 3 80 12 30069029 30069047 ATGATCCATACGCCAATCC 58 30051546 30068985 CTCCTTTATGGACCCTCCT 58 NA Rattus norvegicus 81 Ptpmt1 ENSRNOG00000009723 ENSRNOT00000013584 2 1 1 92 3 79742857 79742875 CTGGTACTGGACGAGAACG 60 79739411 79742803 ATTCTTCCATTCCTTCGAGGT 59 NA Rattus norvegicus 81 Tmem59 ENSRNOG00000009778 ENSRNOT00000013224 1 1 1 80 5 126783290 126789219 CTACCCGAAGGAAGAGGAG 59 126789262 126789281 ATTCCATCATCCACGAACTG 58 NA Rattus norvegicus 81 Mir181b2 ENSRNOG00000035563 ENSRNOT00000053686 2 1 1 60 3 23151468 23151487 CAACATTCATTGCTGTCGGT 60 23151507 23151528 TTTGCATTCATTGACCAGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696,ENSRNOT00000091557 2 3 3 80 18 15520971 15520990 AGGAAGATCAATGGCTTTCC 58 15521031 15521232 AGAGTAGTGAACTCTGTTCCA 58 NA Rattus norvegicus 81 Samm50 ENSRNOG00000011952 ENSRNOT00000016520 3 1 1 80 7 125072044 125073878 GTATTGGATTCGGTGTTCTCC 59 125073920 125073938 GTCAGCAATGCTGGATAGC 59 NA Rattus norvegicus 81 Tmem41b ENSRNOG00000010752 ENSRNOT00000016224 3 1 1 80 1 174610664 174611360 CTTGTTTGCTTGTGCTCTG 58 174610602 174610622 CTTGTATACAACGGGTCTTCC 59 NA Rattus norvegicus 81 Mir221 ENSRNOG00000035631 ENSRNOT00000053754 1 1 1 60 X 3684526 3684545 CTGTGTTTGTTAGGCAACAG 58 3684568 3684586 GAAATGCTTCCAGGTAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc6 ENSRNOG00000023969 ENSRNOT00000058626 2 1 1 80 4 88627380 88628137 GGATTTCCTCCTTGATAACCAC 59 88627321 88627340 GAGCTTCTTGATGTGGAGAG 58 NA Rattus norvegicus 81 LOC679881 ENSRNOG00000017095 ENSRNOT00000023010 3 1 1 87 1 35868422 35868440 AGATCCTTGTTCCTGAGGG 58 35868490 35868513 AAGGCCTCAATATCCTGAGG 59 NA Rattus norvegicus 81 Osbpl1a ENSRNOG00000054058 ENSRNOT00000091909 1 1 1 80 18 4106779 4108884 ACGAATTAGTTCGAGATGACC 58 4106719 4106737 CATGGAATGCACTGATGGG 59 NA Rattus norvegicus 81 Osbpl1a ENSRNOG00000054058 ENSRNOT00000091909 2 1 1 80 18 4106778 4108884 ACGAATTAGTTCGAGATGACCT 59 4106719 4106737 CATGGAATGCACTGATGGG 59 NA Rattus norvegicus 81 RGD1562758 ENSRNOG00000048704 ENSRNOT00000043709 2 1 1 60 18 63824642 63824661 CCTGCCAAGTATGATGACAC 59 63824601 63824619 CCTTTAGTGGGCTCTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jag2 ENSRNOG00000013927 ENSRNOT00000019213 1 1 1 80 6 137717776 137717794 GTGCATTGATGAAGTGGAC 57 137717510 137717732 TCGTTGGGATTGATGTCAC 58 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 2 2 2 81 13 50987629 50987647 TGACTGGGAATACCCAGGA 60 50987690 50987907 TTTGGCCAAATCCTGTATCAG 59 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 2 2 2 80 15 34495507 34496895 CCATCTTCAGGACCTCTGC 60 34496939 34496957 CCTCAATCCTCAGCTCCAG 60 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 3 2 2 80 15 34496982 34497001 CTCATTATGAGACTGAGGGC 58 34497044 34497658 TGTAGCCTAGGAGCTTGAC 59 NA Rattus norvegicus 81 Surf6 ENSRNOG00000005031 ENSRNOT00000006699 3 1 1 108 3 5442794 5443776 TTAATAAGGTGGAGGTAGCTGG 59 5442707 5442725 TAGTTCCTGCCTGTCAGAG 58 NA Rattus norvegicus 81 Efcab1 ENSRNOG00000050091 ENSRNOT00000071986 1 1 1 80 11 90226237 90226919 GATCATGGACAGAGTATTTCGAG 59 90226179 90226200 GATAATCCATGAACCCACTCTG 59 NA Rattus norvegicus 81 Pnmal1 ENSRNOG00000027944 ENSRNOT00000029825 1 1 1 84 1 78894958 78894976 CAACCTGATGATGCACTGG 59 78895022 78895566 TCCTGAAATCTTTGGAGACAC 58 NA Rattus norvegicus 81 Fam222b ENSRNOG00000029570 ENSRNOT00000045107 1 1 1 80 10 65402021 65413041 CTTCAGAAATGGGACACTACAC 59 65413082 65413100 CTTCTTAGCATACGCGTCC 59 NA Rattus norvegicus 81 LOC619574 ENSRNOG00000036666 ENSRNOT00000054922 1 1 1 80 10 110429698 110430890 CCTGCTAGTTGGAATATTATCCAC 59 110429221 110429240 ACATAGAAGAGCTTCCAGCC 60 NA Rattus norvegicus 81 Rbm31y ENSRNOG00000003377 ENSRNOT00000004491 1 1 1 60 X 98094234 98094255 TCAAGTCATTATTCTGTGGGAG 58 98094195 98094215 CGAAGCTATGTTGATTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359752 ENSRNOG00000038241 ENSRNOT00000058219 1 1 1 80 18 81646459 81646477 CAAGGGCTTCTACAAAGCG 59 81644887 81646417 GTTGGCTCTTAAGAATCTGGG 59 NA Rattus norvegicus 81 Olr704 ENSRNOG00000031282 ENSRNOT00000041001 2 1 1 60 3 78409056 78409074 CTGTCACTTCTGGATGCTG 58 78409014 78409035 GCAAGTCTATCATCAACTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rlf ENSRNOG00000027921 ENSRNOT00000046906 3 1 1 80 5 140140227 140140247 TGCTTTCAGTGTCTGAAAGTG 59 140135709 140140185 ATGCATCATGGGACTCCTG 60 NA Rattus norvegicus 81 Thy1 ENSRNOG00000006604 ENSRNOT00000008685 1 1 1 80 8 48384663 48385343 CTCCTGCTTTCAGTCTTGC 59 48385387 48385405 TCGAAGGTTCTGGTTCACC 60 NA Rattus norvegicus 81 Ankrd65 ENSRNOG00000043331 ENSRNOT00000068770 2 1 1 112 5 173238617 173239536 ACCACCAAGAAATTGAGGTG 58 173239611 173239629 TATAGCACGTAGACAGCCA 58 NA Rattus norvegicus 81 Rn60_X_0748.3 ENSRNOG00000051053 ENSRNOT00000077001 2 1 1 86 X 73903975 73903994 CTAGCAAGTGTTCTCCCTCC 60 73904041 73918962 ATGCTAAGGTGTTACTGTGCT 60 NA Rattus norvegicus 81 Kcnk4 ENSRNOG00000021140 ENSRNOT00000028704 3 1 1 81 1 222184539 222184939 GATTATGTACCAGGCGATGG 58 222184477 222184495 CTAGGCCAAACAGGATCCA 59 NA Rattus norvegicus 81 Gja3 ENSRNOG00000008847 ENSRNOT00000011699 3 1 1 145 15 37325040 37325058 GAGCCTCCTTTACAGAGCA 59 37301037 37301055 GACTGTAGAGTGCTCCTGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Smad5 ENSRNOG00000022870 ENSRNOT00000016704 2 1 1 80 17 8319272 8321953 GAGAGTCCAGTCTTACCTCC 59 8319211 8319229 CCTGAACTGAACCAGAAGG 58 NA Rattus norvegicus 81 Lgi2 ENSRNOG00000003887 ENSRNOT00000005168 3 1 1 80 14 60783229 60790899 TATCACAGGTCAGTCCATCG 59 60790942 60790960 CCAAAGAGTTGGGCTACCA 60 NA Rattus norvegicus 81 Rragd ENSRNOG00000007331 ENSRNOT00000068028 2 1 1 80 5 48240182 48245241 GTCATAGACTCCCAGGATGAC 60 48245283 48245301 AGTGTTCACCTTGTAGGCC 60 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 2 2 2 80 1 216871417 216871732 CAATATGAGGACTACAGCCCT 59 216871357 216871378 CTGTAGAGTGTGAAGAATCCCA 60 NA Rattus norvegicus 81 Gjb2 ENSRNOG00000008855 ENSRNOT00000011711 1 1 1 194 15 37383148 37383166 CTTCTGACCAACCCAGGAG 60 37379428 37379446 AGGATGCTCTGTAGTGTGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278,ENSRNOT00000031189,ENSRNOT00000008074,ENSRNOT00000085285 2 4 5 82 8 6137081 6137099 TCAGCATGAGCAGCTACAG 60 6135767 6137035 GATGGTGTCTCCTGTGTCC 60 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 2 1 1 60 4 98481762 98481780 GCAGGCTGATGATATTGCA 58 98481804 98542656 GAATGTGGGAGGAGACTCC 59 NA DesignNoJunction Rattus norvegicus 81 Cpa4 ENSRNOG00000010463 ENSRNOT00000013880 1 1 1 80 4 57891671 57891690 AATGCAACACAATGAAGGGA 58 57891733 57895241 TCGTGGTAAATAGCCTCCG 59 NA Rattus norvegicus 81 Krtap14l ENSRNOG00000042680 ENSRNOT00000064058 2 1 1 60 11 28735601 28735621 TCAGATCCCTGAATTGTGGAG 60 28735561 28735581 TAGGTTCTAGACCCATAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021022.1 ENSRNOG00000029425 ENSRNOT00000043688 2 1 1 80 13 53721472 53721490 CAGAACAAGAGTCAGGGCT 59 53720752 53721429 CCCTGTCTACTCGGTAAAGG 59 NA Rattus norvegicus 81 Per1 ENSRNOG00000007387 ENSRNOT00000057136 2 1 1 80 10 55689262 55689353 GGATGTAGATGAAAGGGCTG 58 55689394 55689414 TGTAGAAAGAGAAGTACCGGA 58 NA Rattus norvegicus 81 Olr1016 ENSRNOG00000003347 ENSRNOT00000004458 1 1 1 60 7 7189454 7189473 ACGCTGATCATCTTTCTGAC 58 7189413 7189432 GGAAGAAGTACATGGGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49i7 ENSRNOG00000048253 ENSRNOT00000073877 3 1 1 80 4 162721833 162721851 GATGTAAACGGATCTGCCA 58 162718390 162721789 GTTGCTGAAGGAACTTCCT 58 NA Rattus norvegicus 81 Cdk2 ENSRNOG00000006469 ENSRNOT00000031963 1 1 1 80 7 3126193 3126467 CTTGTTATCTCAAATGCTGCAC 59 3126134 3126152 TCCTGGAAGAAAGGGTGAG 59 NA Rattus norvegicus 81 Nr5a1 ENSRNOG00000012682 ENSRNOT00000017651 2 1 1 89 3 23000501 23006367 CAGCCTCGATGTGAAATTCC 59 23000431 23000450 CACAAGGTGTAATCCAGCAG 59 NA Rattus norvegicus 81 Syna ENSRNOG00000050672 ENSRNOT00000074788 2 1 1 60 12 25161157 25161175 AAGCCTTTCCATCAGAGCT 59 25161199 25165168 CTTATGGAAGCTGGACCGA 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Coa4 ENSRNOG00000025385 ENSRNOT00000038764 1 1 1 81 1 165549347 165549366 AACTTACTGCCTACAGACCC 59 165549410 165551294 TGACATCTTGAGGAACCCG 59 NA InUTR Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 3 2 2 80 20 32247686 32253323 CACATAAAGCAGAACGCAC 58 32247624 32247643 TTCTCTGAAGCCTTTCAAGG 58 NA Rattus norvegicus 81 AABR07060118.1 ENSRNOG00000054042 ENSRNOT00000088439 1 1 1 80 4 57590304 57590324 AGGAGAGCATTAGATCCACTG 59 57590206 57590263 GGATGGTTTGTGGCTAACAG 59 NA Rattus norvegicus 81 LOC102552705 ENSRNOG00000039459 ENSRNOT00000060470 3 1 1 60 18 30870199 30870220 ACCCTGAACTGGTATTAAAGAC 58 30870240 30870259 ACCAAGCGGTAGAATTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 3 2 2 82 20 32296563 32296581 TATGAACGCAGGTCAGGTG 60 32294810 32296517 AGGGAACAGCAATACCTGG 59 NA Rattus norvegicus 81 Pcbd2 ENSRNOG00000047796 ENSRNOT00000071426 1 1 1 81 17 8931143 8931161 CTTTATGTCCAGGGTTGCC 59 8929897 8931100 GATCTGGACCTTGTTGTACAC 59 NA Rattus norvegicus 81 LOC691952 ENSRNOG00000037178 ENSRNOT00000056119 2 1 1 81 3 114129852 114131240 TGACACCCTGAGAATCTATCAG 59 114131280 114131300 TACTGCAGCAAGATAGTAGGC 60 NA Rattus norvegicus 81 Olr299 ENSRNOG00000031394 ENSRNOT00000043726 2 1 1 60 1 213011970 213011990 GTACATCCACTGTTCTTCCCA 60 213011930 213011949 GAAATGTGGCTGCTCTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lad1 ENSRNOG00000009144 ENSRNOT00000012801 1 1 1 81 13 52655327 52655345 ATCTTCACCCACACTCACC 59 52655390 52656198 TTTCTTGAGGCTCATCCGG 60 NA Rattus norvegicus 81 Tut1 ENSRNOG00000020047 ENSRNOT00000027187 1 1 1 80 1 225158639 225158657 GTCCTGTGGTCAAGTTCTG 58 225158700 225160335 AATTATACAAGGCCAACCGG 58 NA Rattus norvegicus 81 Tpbpa ENSRNOG00000039975 ENSRNOT00000061427 2 1 1 88 17 4166521 4166542 GACTGTCAAACTGTACAATAGC 58 4166590 4166707 CTTCATCAGTCAGCTCACTG 58 NA Rattus norvegicus 81 Klf16 ENSRNOG00000033694 ENSRNOT00000045421 1 1 1 84 7 12007208 12007226 AGTCTTCGCACCTCAAGTC 60 12014497 12014515 AACTTCTTGTCACAGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Ttr ENSRNOG00000016275 ENSRNOT00000022113 1 1 1 108 18 15533212 15536157 ATGAATACGCAGAGGTGGT 59 15533122 15533140 TTACTGACGACAGCAGTGG 60 NA Rattus norvegicus 81 LOC100910068 ENSRNOG00000025725 ENSRNOT00000035678 3 1 1 80 7 116035460 116035478 GAGCAACCTTAACTGCTCG 59 116034460 116035417 TCGAATATTCGTGTGACAGC 59 NA Rattus norvegicus 81 Mocos ENSRNOG00000015113 ENSRNOT00000066583 2 1 1 80 18 16623684 16627119 CGCCTAAACAAGGTCATCC 59 16627160 16627181 ATGTGTTCACCAACAGATACTG 59 NA Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000091096 3 1 2 82 20 4067708 4067729 ACTTCAAGAGATAGCTACAGCA 59 4067221 4067665 CAGGAACCTTGTTGGTAGC 59 NA Rattus norvegicus 81 Odf3b ENSRNOG00000037060 ENSRNOT00000055805 2 1 1 170 7 130350231 130350469 AAACACCGGTTACAAACTGC 60 130350080 130350098 CCATAGATGGAGAAGGCCG 60 NA Rattus norvegicus 81 Tspo ENSRNOG00000010549 ENSRNOT00000014089 2 1 1 112 7 124460410 124468359 GAGGCTGTGGATCTTTCCA 59 124468435 124468453 AAGTAGGCTCCCATGAAGC 60 NA InUTR Rattus norvegicus 81 Cd69 ENSRNOG00000056783 ENSRNOT00000091644 3 1 1 81 4 163045078 163045096 TCCTATCCCTTGTGCTGTG 59 163044007 163045034 GTACTTGCCCACACTTAAGG 59 NA Rattus norvegicus 81 Olr1614 ENSRNOG00000008739 ENSRNOT00000011549 2 1 1 60 15 27207928 27207947 CCTTCACTCAATGCCTACTC 58 27207970 27207988 AGACATTCAGTTGTGCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 2 2 2 80 4 123662976 123662994 TCTGCCTCCTCTTAGTCTG 58 123657789 123662932 TGAAGTAGACAACCTTGCC 57 NA Rattus norvegicus 81 Slc7a9 ENSRNOG00000012344 ENSRNOT00000016919 3 1 1 80 1 91732461 91732482 CCACATGCTTAAAGTGCTATCC 60 91732518 91733422 GCTATTATGCCATAGAATACGAGG 59 NA Rattus norvegicus 81 RGD1305350 ENSRNOG00000007968 ENSRNOT00000010558 1 1 1 82 5 164755753 164755775 TCCACCTCTTCCTCTTTAAACTC 60 164755817 164756984 GGGATCTTCCTTGCTCCTG 60 NA Rattus norvegicus 81 Leo1 ENSRNOG00000010116 ENSRNOT00000013512 1 1 1 81 8 82386861 82388719 GGTGCCCAAAGATAATAATGGA 59 82388761 82388779 CTTGTCCTCTCCGTCACTC 60 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441,ENSRNOT00000065280 2 2 2 80 5 128717806 128718784 CTGTCTTACCTCCAGAACCC 60 128717745 128717765 TAGCTAACACAGGTCCAACAG 60 NA Rattus norvegicus 81 Rn60_11_0339.1 ENSRNOG00000056154 ENSRNOT00000088768 3 1 1 60 11 33830091 33830111 AGAAGAGGTTGACTCTCACAG 59 33830133 33830151 CATACAAGTCTGTGGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228,ENSRNOT00000028075 1 2 2 102 8 117829347 117829365 GAAGCTGAAGGAGGTGAGG 60 117829429 117829878 CTTCTCTTCCTGTAGCATCCT 59 NA Rattus norvegicus 81 Tlcd1 ENSRNOG00000012579 ENSRNOT00000016840 3 1 1 80 10 65439986 65440314 CATCATGTCATGGCTATGGG 59 65440355 65440375 CAGTAGTGTTAAGACTCCACC 58 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651,ENSRNOT00000048980 1 2 2 80 X 10590515 10590536 TGTGTCATACTATACCCATCGG 59 10588516 10590475 TGTATCCATTCAGCCATCCT 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651,ENSRNOT00000048980 3 2 2 80 X 10590515 10590535 GTGTCATACTATACCCATCGG 58 10588515 10590474 CTGTATCCATTCAGCCATCC 58 NA Rattus norvegicus 81 Tnfrsf14 ENSRNOG00000013820 ENSRNOT00000018494 2 1 1 81 5 172332169 172332187 TATGTGCTGACTGCCTGAC 60 172330573 172332124 AAGGTACTGCACTTGGTCC 60 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 1 2 2 80 16 37133286 37133307 CAAAGTTCTCACATAGGTTCTG 57 37132175 37133247 GTACATAGACAGCATCTGGAC 58 NA Rattus norvegicus 81 Olr1376 ENSRNOG00000049640 ENSRNOT00000041353 2 1 1 60 10 12673572 12673593 TCATAGCTCAACTCTCCTTCTG 59 12673533 12673553 GTCACATCACAGAAGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr229 ENSRNOG00000046061 ENSRNOT00000075443 3 1 1 60 1 170694287 170694307 CAGCAGATACTTACAGCACAG 59 170694247 170694267 GCTAGGAGAATTACAATGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1s ENSRNOG00000046231 ENSRNOT00000074366 2 1 1 80 13 52911401 52911421 AACTTTGGCTTCTCTATGCTC 58 52911462 52912577 ATCATTGACCCAGTACAGGA 58 NA Rattus norvegicus 81 Ifna4 ENSRNOG00000033823 ENSRNOT00000046207 2 1 1 60 5 106922994 106923012 CTGGCACAAATGAGGAGAC 59 106922952 106922971 ATCCAAAGTCCTGTCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635,ENSRNOT00000022665 2 3 3 80 18 12017543 12017994 CAAATCCAGGTAAGAGATCATAACG 60 12018031 12018050 GATCCATTCTCGTTTCTGCC 59 NA Rattus norvegicus 81 Siglech ENSRNOG00000021499 ENSRNOT00000032254 1 1 1 82 1 114147258 114148125 TCTTCCTCAGCATGAGACC 59 114148170 114148189 CTAATCCATGACAGTGGCTG 59 NA Rattus norvegicus 81 Mal ENSRNOG00000015445 ENSRNOT00000020870 3 1 1 91 3 120217105 120233493 TTGAGTTTATCTTTGGAGGCC 58 120217034 120217052 AGACACAAACATCACCCAG 58 NA Rattus norvegicus 81 Fstl3 ENSRNOG00000009311 ENSRNOT00000012578 1 1 1 102 7 12809182 12809200 AACATCAACACAGCCTGGT 60 12807660 12809117 CGCAAGAATCTTTGCATGGT 60 NA Rattus norvegicus 81 Atp5a1 ENSRNOG00000017032 ENSRNOT00000022892 2 1 1 80 18 74163924 74163943 ATCACAAAGTTCGAGAGTGC 59 74163985 74164281 CCCATCAGACCTGATATTGC 58 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000061753 ENSRNOT00000086709 3 1 1 60 3 74766204 74766222 ACAGCCCAAATCTAGTCAC 57 74766162 74766181 CAAGGTGTAGAACACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata6l ENSRNOG00000015137 ENSRNOT00000020464 1 1 1 80 1 247060543 247061237 GCAAACATAAAGGTTGTCAGAG 58 247060484 247060503 ATGGCCTGAATTTAGAGGTG 58 NA Rattus norvegicus 81 Nat2 ENSRNOG00000049498 ENSRNOT00000044198 3 1 1 80 16 23962126 23984535 CAATTGACTGGAAACCATGGA 59 23962066 23962085 TCCAAGTCCAGTTTGTTCCT 59 NA InUTR Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 1 2 2 80 10 49259692 49263164 TGGAACAATATCTCAGGCCTC 60 49263205 49263224 GTCATGTGTAGCGTTGTAGG 59 NA Rattus norvegicus 81 Mpeg1 ENSRNOG00000021084 ENSRNOT00000028622 3 1 1 80 1 228726949 228726969 ATGACTGTCATCCATGGGAC 60 228727010 228727030 CTAGTGCTATGATGACTCCCA 59 NA Rattus norvegicus 81 Osr1 ENSRNOG00000004210 ENSRNOT00000005666 3 1 1 80 6 35314664 35314683 AGTCTCTGGTCACTCAAGTC 59 35314725 35319109 ATAATCGATCTTGTTCCGCG 59 NA InUTR Rattus norvegicus 81 Zyg11a ENSRNOG00000010885 ENSRNOT00000014514 2 1 1 80 5 127811082 127811100 GAAGGAAGCGCTCTATAGG 57 127805234 127811038 ATAGCCACAAGCTTTAGCA 57 NA Rattus norvegicus 81 Fundc2 ENSRNOG00000024066 ENSRNOT00000033618 1 1 1 80 18 405936 405954 CAGCTGAAGATCCATAGGG 57 407053 407071 CTTCTTCACGAACGACAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ifitm7 ENSRNOG00000021674 ENSRNOT00000039434 2 1 1 60 11 34037413 34037431 AATGCCTGAACATCAGCTC 58 34037454 34037473 GCAACCATAGTGGTAACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC115420.2 ENSRNOG00000047447 ENSRNOT00000071027 1 1 1 60 4 157374858 157374876 GAAACCGAAGTGAGACGGA 60 157374900 157374918 CCCACACTAGACCTGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 1 2 2 80 18 16541463 16541481 GATTCTGTGAGTGAGCCCA 59 16539871 16541419 TGTTGCATTGAAGCACTCC 59 NA Rattus norvegicus 81 Ipo9 ENSRNOG00000007418 ENSRNOT00000011105 1 1 1 80 13 52208281 52208302 GAAGACGATGAAGAAGATGACC 59 52207775 52208242 GAAGTCTGTGAGATATGCCTG 58 NA Rattus norvegicus 81 LOC100910780 ENSRNOG00000047935 ENSRNOT00000073295 3 1 1 60 18 54207449 54207468 TACATCAAAGGTGACCTCCC 59 54207491 54207509 GAAAGGAATTGGGAGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1449 ENSRNOG00000046934 ENSRNOT00000047671 2 1 1 60 10 44650637 44650655 CAGACACCTTCCTCTTCAC 58 44650679 44650697 ATGTTGCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828,ENSRNOT00000090912 1 2 2 80 2 104906718 104908078 TTCTTAATGGACCCAGCCT 58 104908121 104908140 CTCTTGTTTCTGGCCAAGTC 59 NA Rattus norvegicus 81 Iffo1 ENSRNOG00000018533 ENSRNOT00000048379 1 1 1 80 4 157666920 157673510 CAGATAGAGCTGGAGCTGG 59 157673554 157673572 CTTCATGCTGCACATCTCC 59 NA Rattus norvegicus 81 Mir742 ENSRNOG00000040422 ENSRNOT00000062175 1 1 1 60 X 151260364 151260383 GCTTTACTCACATGGTTGCT 59 151260323 151260341 TTTACCCAACATGGTGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054897.1 ENSRNOG00000042226 ENSRNOT00000043955 1 1 1 80 3 173269735 173269754 CAATCCTTTGCCAAAGAGTC 57 173269797 173270020 TCCCAAATGGAGCATACAG 57 NA Rattus norvegicus 81 Olr1076 ENSRNOG00000039448 ENSRNOT00000060455 3 1 1 60 7 13424449 13424471 GTAGTAACACCTATGTTGAACCC 59 13424411 13424431 CCTTCTTCATGTCATTGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 3 2 2 89 5 129163934 129163952 GGATCATGCAAACCAAAGC 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Pdlim1 ENSRNOG00000016166 ENSRNOT00000022000 3 1 1 82 1 259333253 259335655 AGTATCCAGGTCTGAGCAG 58 259333189 259333210 ACGCTAAATTCATCTTGTAGGG 59 NA Rattus norvegicus 81 Olr1394 ENSRNOG00000047636 ENSRNOT00000043058 1 1 1 60 10 34673578 34673598 AACCCTCTGATCTATACCCTG 58 34673619 34673638 CTAGCACCTTCCATAGAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msrb3 ENSRNOG00000042668 ENSRNOT00000064251 2 1 1 81 7 62931284 62931302 TTTCCCAGCAGGAACTGAG 60 62929579 62931240 TCAAAGGCACTTTCTGTTCC 59 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704,ENSRNOT00000078453 3 2 2 80 5 173339008 173339175 GCCATTCGTGTACTGAAGG 59 173338946 173338966 GTATAGGTAGGTTCTGGAGGT 58 NA Rattus norvegicus 81 Helz2 ENSRNOG00000013267 ENSRNOT00000017787 2 1 1 80 3 176733506 176733615 ATTCTTCCCGCAAGGTACC 60 176733444 176733464 GGTTCAGCTTATGATGTCCAC 59 NA Rattus norvegicus 81 Rnf126 ENSRNOG00000009028 ENSRNOT00000012317 1 1 1 88 7 12825321 12825487 CCATTTGAGAATGTGGACCAG 59 12825537 12825555 ATCTCAAAGCTGTCGTCGA 59 NA Rattus norvegicus 81 Aspm ENSRNOG00000012318 ENSRNOT00000016797 2 1 1 80 13 56552525 56552545 AGAGAAGATCCATTGTCCCTG 59 56552585 56552842 TTGGGTGTCTAGGAATAGCTG 59 NA Rattus norvegicus 81 Rnd1 ENSRNOG00000059857 ENSRNOT00000077856 2 1 1 80 7 140355349 140355369 AATTACACAGCCTGTTTGGAG 59 140352681 140355308 GTCATAGTACGGAGAGCCTG 60 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 3 2 2 80 10 15197177 15197273 CTTTGGAATTGCAGGAGCT 58 15197314 15197335 TTCCGACCATAGATAACCTCTG 59 NA Rattus norvegicus 81 Cpt1b ENSRNOG00000010438 ENSRNOT00000013985 2 1 1 80 7 130399976 130399995 AGAATCCTCGATGACACCTC 59 130399621 130399933 CCACTCTACCCTTCCTCCT 60 NA Rattus norvegicus 81 Cpt1b ENSRNOG00000010438 ENSRNOT00000013985 3 1 1 80 7 130400110 130400657 AAAGAGACAGACTTGCTACAG 58 130400050 130400068 CCAAACCTTGAAGAAGCGA 58 NA Rattus norvegicus 81 Prss54 ENSRNOG00000023092 ENSRNOT00000033953 2 1 1 80 19 9899988 9905696 TCCAGAACAGGAAGGAGGT 60 9905737 9905758 TTGAATACTCTTTGTGGTCAGC 59 NA Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599,ENSRNOT00000011324 3 2 2 80 13 53003703 53003721 CCAGTCTCGCTATGAGAGG 59 53003765 53006110 TTCATGAGGGCTACCTTGG 59 NA Rattus norvegicus 81 Srbd1 ENSRNOG00000014720 ENSRNOT00000019894 1 1 1 80 6 9361318 9361338 CTCTATCTACAGTGTCAGCCC 60 9353533 9361278 GCTATGGAAACTGCACTTCTC 59 NA Rattus norvegicus 81 Neurl1b ENSRNOG00000027606 ENSRNOT00000039398 2 1 1 137 10 17048489 17048832 AATCGTCTCTGGTGACAGC 60 17048370 17048388 TGTAGATGACCGTGTCCAC 59 NA Rattus norvegicus 81 AC109901.1 ENSRNOG00000053208 ENSRNOT00000045807 2 1 1 80 11 85633271 85633413 TCCTTCATCACTTAACAGGGTC 60 85633450 85633472 CTGTGATTCCTAGAGACGTAGAC 60 NA Rattus norvegicus 81 Ecd ENSRNOG00000042253 ENSRNOT00000008553 1 1 1 80 15 4411787 4414506 CATGAAGTTGGCTCATGGA 58 4414550 4414568 GTGACAAGGGATTTCCTGG 58 NA Rattus norvegicus 81 LOC681458 ENSRNOG00000013279 ENSRNOT00000018090 3 1 1 80 1 263968366 263982363 ACTTGTTGCAAGAAGAGATGAC 59 263982403 263982422 CTTTCTGCATGACTCCAGAG 58 NA Rattus norvegicus 81 Srsf1 ENSRNOG00000050323 ENSRNOT00000073005 3 1 1 80 10 75336058 75336426 GTTGTTTCTGGACTGCCTC 59 75336468 75336488 AGCATAACATACATCACCTGC 59 NA Rattus norvegicus 81 Ccdc92 ENSRNOG00000021691 ENSRNOT00000032739 1 1 1 94 12 37232828 37232846 GAACCTGCTCTTCCTCCAG 60 37232902 37233618 ATGTTAGATCTGTGCAGTGCT 60 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000090303,ENSRNOT00000034642 3 2 2 89 14 38108161 38108179 CTGTGATGGTTATCCACGC 59 38107434 38108110 AGGAAATGAACCCTGGATCTC 60 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 2 2 2 80 10 86828577 86831056 CACTCTCCGAATGTAAATCACC 59 86831094 86831115 CCGAAATGACTTGGGATATGTG 60 NA Rattus norvegicus 81 Enpp3 ENSRNOG00000013791 ENSRNOT00000018695 1 1 1 80 1 21627666 21635393 TCCAGAAGGGTTTGACCAG 59 21635433 21635455 GTGCTCCATGTTTGTAAGTACTC 60 NA Rattus norvegicus 81 Hbz ENSRNOG00000020536 ENSRNOT00000027851 1 1 1 80 10 15610733 15610753 AGCTATCATCATGTCCATGTG 58 15609888 15610691 CTGAAGAGCCTCTCCAGAG 59 NA Rattus norvegicus 81 Nol12 ENSRNOG00000010209 ENSRNOT00000013764 1 1 1 81 7 120163906 120164375 AGAGGAGGCACTAGAGGAG 60 120164420 120164438 ATTGGGATGGTCGTACTGC 60 NA Rattus norvegicus 81 Fam134c ENSRNOG00000020056 ENSRNOT00000027217 3 1 1 80 10 89009734 89011101 AGAGAAAGACAATTGCGCC 59 89009672 89009690 CGCAAGTTCCTCTTCACTG 59 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 1 2 2 80 2 199836098 199836117 AAGGAGGTCTTCATCTCTGG 59 199836157 199837442 GGCAACAAAGTCATTATGACTC 58 NA Rattus norvegicus 81 Marcks ENSRNOG00000000579 ENSRNOT00000000707 2 1 1 113 20 42966526 42966544 GTGCACAGTTCTCCAAGAC 59 42966621 42968157 TTACGTGGCCATTCTCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000076536 1 1 2 78 10 70370602 70370620 AGACAACCACAGAGCTCAC 60 70375403 70375421 CTTTCCTTGCAGGCAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 3 3 3 80 5 122126895 122128457 GATCATCTAGCCAAGGAGCT 59 122128499 122128518 CCGATTATGGGAGTACCCAG 60 NA Rattus norvegicus 81 Atf4 ENSRNOG00000017801 ENSRNOT00000065304 1 1 1 67 7 121481721 121481739 ATGGATGGGTTGGTCAGTG 60 121481880 121481898 AACATCCAATCTGTCCCGG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp654 ENSRNOG00000029956 ENSRNOT00000050533 2 1 1 60 11 1836185 1836205 TGTAATGAAGTGGAGCAAAGG 59 1836145 1836164 TTGAGAATCCTCAAACTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp654 ENSRNOG00000029956 ENSRNOT00000050533 3 1 1 60 11 1836052 1836071 CATTTAAGCTGCCATTCCAG 58 1836011 1836032 TGAGCTTGAAATATCCTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 3 2 2 80 1 64089295 64089532 GTTGATTGGAGAGTATGGGC 59 64089234 64089252 GCAGCCTTACGAATCTTCG 59 NA Rattus norvegicus 81 Socs5 ENSRNOG00000028504 ENSRNOT00000020337 3 1 1 61 6 10674725 10701120 CTCTCGCTCTTCTAATCAATGG 59 10701139 10701160 CACCTGTATTTGAAGTTGTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000083871,ENSRNOT00000058803 1 2 2 80 14 70912019 71043289 AAGCGATACACTATCGGCA 59 71043332 71043351 GTAGTACAGGTCTGTCACCC 59 NA Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000083871,ENSRNOT00000058803 2 2 2 80 14 70780946 70911930 CAGTCTCGTACAGAGGACAG 59 70911970 70911991 TGTTAATGTGGCATCATCTTCG 60 NA Rattus norvegicus 81 Olr1091 ENSRNOG00000050907 ENSRNOT00000071081 1 1 1 60 7 15629181 15629199 GGACCCAATGAGATCCACC 60 15629221 15629241 CACATGCCAACTTCAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000086003,ENSRNOT00000026748 3 2 3 80 1 199495440 199497499 TTCTTCTGGTGACAGTCCT 58 199497542 199497561 TTGCATTCTCTTGGAAGGTC 58 NA Rattus norvegicus 81 LOC100912282 ENSRNOG00000015447 ENSRNOT00000021523 2 1 1 80 7 145444306 145444327 GGAGTTAGAGGATGACATCCAG 60 145442500 145444266 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 LOC498063 ENSRNOG00000001986 ENSRNOT00000002718 3 1 1 60 11 32469368 32469389 GGGAAGACTTTAGTGATAACGG 59 32469329 32469349 CCAGCATGTAGAATACACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd7 ENSRNOG00000042384 ENSRNOT00000001198 1 1 1 80 12 30029887 30029906 GGCATTACATCCCTACAGAC 58 30025464 30029845 GGAAATTCAGCACATCTCCA 58 NA Rattus norvegicus 81 Rn60_X_0770.1 ENSRNOG00000048710 ENSRNOT00000073878 1 1 1 60 X 76998204 76998223 AAATGATGAGAGTTGCCTCC 58 76998246 76998264 TGTTCTCGTGTGAAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsd3b1 ENSRNOG00000019441 ENSRNOT00000026306 2 1 1 82 2 202342552 202343793 CTAGATGTCAATCTGAAAGGTACC 59 202342493 202342511 GTGCTGCAGTAGATGAAGG 58 NA Rattus norvegicus 81 Ncf4 ENSRNOG00000006940 ENSRNOT00000009544 1 1 1 80 7 119490590 119490609 CCAAAGTCTACATGGGTGTC 58 119490650 119492320 TCAGGAGGTTCTTCATGTAGG 59 NA Rattus norvegicus 81 Slc35d2 ENSRNOG00000027229 ENSRNOT00000036212 3 1 1 80 17 1620929 1620949 ATGTATTCCACAGCTCTTTGC 59 1619974 1620888 AACCGATACGTTCTTGATCG 58 NA Rattus norvegicus 81 Gnmt ENSRNOG00000016349 ENSRNOT00000022307 1 1 1 80 9 16566988 16567008 AAGATGCTGAAATACGCACTG 59 16567050 16567624 GGCTTCTTCAATGACCCAC 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000083286,ENSRNOT00000041442 2 2 3 65 6 99985704 99986940 CTTCTGGAGCAACAAGTCC 59 99985657 99985675 GTAGTTGGTCTGCAGTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem39b ENSRNOG00000023746 ENSRNOT00000032558 1 1 1 80 5 147906823 147906847 CATCAACATCTATAAGACAGTCTGG 59 147906170 147906786 TCGATCAGGTGGAAGTTCAG 60 NA Rattus norvegicus 81 Pyurfl1 ENSRNOG00000006858 ENSRNOT00000008973 3 1 1 95 4 88584518 88585698 AGCCGCTTAGATATGATGC 58 88585755 88585775 GTGGTATCATATTAGGGACCC 57 NA Rattus norvegicus 81 Rassf4 ENSRNOG00000013526 ENSRNOT00000018101 1 1 1 81 4 148788736 148791176 GTTCATTCTAAAGTCAGAGCTC 57 148788676 148788694 GTGTCTTAGCTGGAAGCTC 58 NA Rattus norvegicus 81 Rassf4 ENSRNOG00000013526 ENSRNOT00000018101 3 1 1 85 4 148771699 148771718 GAAATGCCAGTTCTGGACAG 59 148770520 148771652 GCTTGGAACTTCATGGTCAG 59 NA Rattus norvegicus 81 LOC100363232 ENSRNOG00000033165 ENSRNOT00000050837 2 1 1 60 5 126691235 126691253 AGCCTTTGGCAAGTATTCC 58 126691193 126691212 TTCTCTGGACTTGCAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrta2 ENSRNOG00000008105 ENSRNOT00000067277 1 1 1 119 5 129756605 129756623 TACGAAGTCTTTGGCTCGG 60 129757946 129757964 AAACTTCTGCAACTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp292 ENSRNOG00000031031 ENSRNOT00000035808 2 1 1 80 5 50318890 50318911 TAAAGCTCGACCATACCTTACC 60 50318651 50318851 AGTTCAACACAGCTTAATGCC 60 NA Rattus norvegicus 81 Ppp1r21 ENSRNOG00000016528 ENSRNOT00000061675 2 1 1 80 6 12293643 12293661 AGCTGGTAACGACTAACGA 59 12293702 12296794 TGAAGAAAGATGCAATCTTCCC 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 3 3 3 80 3 118184470 118184490 AACATCTGTATCGACAAGACC 58 118184530 118188301 ACCAAAGTGTTCCTGAATTCC 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828,ENSRNOT00000064743 3 2 2 96 2 3809374 3821225 CAAGAGCAAGATTATGCCCA 58 3821284 3821302 AGTGATGTCCATGACTCCG 59 NA Rattus norvegicus 81 Fgf22 ENSRNOG00000008960 ENSRNOT00000011936 1 1 1 87 7 12830156 12831497 GCCAGGACAGTATTGTTGAG 59 12830088 12830106 TTCATGGCCACATAGAAGC 58 NA Rattus norvegicus 81 Thnsl2 ENSRNOG00000006508 ENSRNOT00000008698 1 1 1 80 4 98988401 98988422 AGGACATTGCTCAAAGATTCAG 59 98984029 98988361 TTTCCTTCCACTCCAAACAC 58 NA Rattus norvegicus 81 Rn60_17_0348.1 ENSRNOG00000059621 ENSRNOT00000086900 3 1 1 60 17 34712340 34712359 CCCTTCACTGGTAATGTCTC 58 34712299 34712317 TCCTCTTTGTCACAACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx3 ENSRNOG00000021013 ENSRNOT00000028535 1 1 1 80 1 228160018 228161367 AACAAACTGAAGAGCATGGAG 59 228159958 228159976 CTGGGACTTTCGTATCCGA 59 NA Rattus norvegicus 81 AABR07065789.1 ENSRNOG00000006333 ENSRNOT00000008333 1 1 1 60 6 141291314 141291335 TGGAACTTGCTATTTCTGATGG 59 141291197 141291216 GTACCAACTGGATCTGTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Tbc1d15 ENSRNOG00000003889 ENSRNOT00000067907 1 1 1 80 7 58173654 58173673 TGAAGACCCAGTTAATCCAG 57 58172927 58173613 AGTCCTGGGATTCTAAATAGC 57 NA Rattus norvegicus 81 Tshz3 ENSRNOG00000013938 ENSRNOT00000018931 1 1 1 96 1 92708024 92774932 CAGCCTATGTTTCCGATGAG 59 92707947 92707965 TACTTGGCTGAAGGCTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713,ENSRNOT00000035907 3 2 2 80 9 15661311 15661330 TCACCATCTCACAGTACCAC 59 15656271 15661268 AAAGAAGACCTTGCCACAC 58 NA Rattus norvegicus 81 Shfm1 ENSRNOG00000010420 ENSRNOT00000013841 3 1 1 90 4 32067893 32069842 CAATCAGTTACGCGCTGAG 59 32067821 32067842 GAGTCCATGTTTAAGTTCCTGG 59 NA InUTR Rattus norvegicus 81 Ctbs ENSRNOG00000015573 ENSRNOT00000020972 2 1 1 80 2 252314663 252314683 GATGAGCAAAGTCAGATCTGG 59 252314720 252315800 GTCACCATATCCAGTTAATGTCTG 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 3 2 2 80 17 9692773 9692792 GGAAGAATTCGCCCAATCAG 59 9692835 9693022 ATGTCGATTTCTGGAGGCT 59 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 3 3 3 80 13 56992924 56992943 GTATCGAATGGATGGCTCTG 58 56991237 56992884 CAGGAATTATCTTTGCATACCG 58 NA Rattus norvegicus 81 Slc35e3 ENSRNOG00000027622 ENSRNOT00000029493 3 1 1 80 7 60770684 60770704 CTGGAGTAATCGCTTTCATGG 59 60766949 60770644 CGAACATGTTGTAGGTGACTG 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 2 3 4 80 10 24017207 24017228 CTATGGTTTCCAGAGGTTACAG 58 24017267 24035409 TTAAGGATCACTTCCTTTGGC 58 NA Rattus norvegicus 81 Cldn5 ENSRNOG00000045811 ENSRNOT00000071806 2 1 1 60 11 86356971 86356990 TTCCAGTCAAGTACTCAGCA 59 86356930 86356949 TTCTTCTTGTCGTAATCGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdc2 ENSRNOG00000004936 ENSRNOT00000007255 1 1 1 80 7 71669604 71669623 CTCCATTGAGGAAGCTTCAG 58 71669665 71675862 TCTTCATAAGCTCCTGAGCC 59 NA Rattus norvegicus 81 Dok4 ENSRNOG00000015679 ENSRNOT00000021037 3 1 1 80 19 10568384 10571583 AGCTTGGGATTTACCGGAG 60 10571627 10571645 CAGGATACTTCTCCAGCCG 60 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724,ENSRNOT00000067420 1 2 2 80 8 53349039 53349059 GTAGTAGAACGAACCCTTCTG 58 53349095 53349229 CACCTTCATGATACTGATAGATCTC 59 NA Rattus norvegicus 81 Cyr61 ENSRNOG00000014350 ENSRNOT00000019501 3 1 1 82 2 251530717 251530856 AGAGGCTTCCTGTCTTTGG 59 251530653 251530673 AGTCTGAACGATGCATTTCTG 59 NA Rattus norvegicus 81 Zdhhc25 ENSRNOG00000046044 ENSRNOT00000071151 1 1 1 60 7 129596084 129596103 AACCTGAAGGCTATTTGTGG 58 129596126 129596144 GGGAATGGAAAGGACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkal1 ENSRNOG00000018381 ENSRNOT00000024854 1 1 1 80 17 37125128 37125148 GAAACCAGAGTCTATACACCC 58 37125190 37294790 ATAATCCAGAGCCGTTGTC 57 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 2 2 2 80 18 26584330 26604923 AAGAGAAACAGAATACGACAGG 58 26584271 26584291 CTCCTTCTGTCTCCTTAACAC 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 3 3 3 94 7 120659562 120659580 CAAGCGTCAGAAGTACGAG 58 120659004 120659506 GGTAAGTTGAGAACTCAGAGG 58 NA Rattus norvegicus 81 Lama1 ENSRNOG00000017237 ENSRNOT00000023226 2 1 1 80 9 115972042 115972815 ATGGCGCTGTATAGATTGGA 59 115972858 115972876 CACATCAGCAGCAACTACC 59 NA Rattus norvegicus 81 Itpripl1 ENSRNOG00000012151 ENSRNOT00000016172 3 1 1 145 3 119618622 119619686 AACTGAGACCATGCAGAGG 59 119618495 119618514 CTCATTCGTTTCTCCAGCTG 59 NA InUTR Rattus norvegicus 81 Rabl2a ENSRNOG00000013947 ENSRNOT00000044262 3 1 1 80 7 130557908 130559566 CTGCATCATGGTATTTGATGTC 58 130557849 130557867 CTGAACTCCCGAAGTTCTG 58 NA Rattus norvegicus 81 Gfra3 ENSRNOG00000020309 ENSRNOT00000027544 3 1 1 100 18 27506399 27512735 AAGCCTTGGTGACTACGAG 59 27506317 27506335 CTGGTTTGAGCATGCTCAG 59 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 1 2 2 80 9 16869176 16869194 CCGAGTTCCATCTCTTCCT 59 16869238 16871957 ACACCGACATGATCAACTG 58 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000072207,ENSRNOT00000075851 2 2 2 60 10 70399520 70399538 GTCACTCACTTCTGTGAGG 58 70399561 70399580 GCACTTCCATGAATTTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787,ENSRNOT00000088006 3 3 3 80 12 37614702 37614721 AGACCATCGATAATGGCTGG 60 37614761 37616445 GAAGGAATGTTTCATGTTGCTG 59 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000091565 3 1 2 62 9 16530126 16530144 TGTCCATCTGAAGCATGGG 60 16536301 16536319 GGAGCCAAAGAAGGAAAGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07052130.1 ENSRNOG00000008501 ENSRNOT00000011239 2 1 1 96 3 38280643 38280661 AAGGCCTGAAGAAGATGCA 59 38280912 38280930 TTAGGCTTGATGGCCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Pafah1b1 ENSRNOG00000002755 ENSRNOT00000003696 1 1 1 80 10 61468066 61476865 AGGATGCTACAATTAAGGTGTG 59 61468007 61468027 CCTGTACAGAATCTGTATGCC 58 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153,ENSRNOT00000004881 1 2 2 123 13 60591803 60593959 TGATTTAGGTGCATGCAATCAG 60 60595516 60595535 TCTGTCAGATACAATGGCCA 59 NA Rattus norvegicus 81 Fam13b ENSRNOG00000020384 ENSRNOT00000027663 2 1 1 80 18 27238146 27238731 GGAAAGAAATAGCAAGCCCTC 59 27238086 27238107 AACTTTGTAAGCTCTGTCATCC 59 NA Rattus norvegicus 81 Sap18 ENSRNOG00000020771 ENSRNOT00000028179 3 1 1 60 10 89636033 89636054 ATCGAGTTAAAGAGATTGGCAG 59 89636075 89636093 GTCATGGAGTCATCAGTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar3 ENSRNOG00000015260 ENSRNOT00000020656 2 1 1 80 2 252115081 252157453 TGTCTTAGGAGCCTTCGTG 59 252157496 252157515 TTACACTGCTTGCAGTTCAG 59 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000076170 3 1 2 60 1 85491023 85491042 TCCAAGAAGTCCCTTGTCTC 59 85491065 85491083 GGACAGGCACATTCAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkl ENSRNOG00000001214 ENSRNOT00000001625 3 1 1 80 20 11398254 11402350 CTCATCTACGAGGGCTACG 59 11402394 11402412 GATGTTGGAGACACTGAGC 58 NA Rattus norvegicus 81 Cdk6 ENSRNOG00000009258 ENSRNOT00000012597 2 1 1 80 4 27786303 27787619 AAAGACCTCCTTCTGAAATGC 59 27786243 27786261 GAAGTACGGGTGATTCAGG 58 NA Rattus norvegicus 81 Enpp1 ENSRNOG00000013994 ENSRNOT00000019519 1 1 1 80 1 21804402 21804422 AGTCCCATGCATAAATGTTCC 59 21804464 21805663 TCTGTTTAGTCTTGGCGGT 59 NA Rattus norvegicus 81 Rit2 ENSRNOG00000017568 ENSRNOT00000023874 1 1 1 80 18 23881310 23881330 CCGTCACACCTATGAAATTCC 59 23701163 23881270 TCTTCTGTAGAAACCTGACGG 60 NA Rattus norvegicus 81 Sp8 ENSRNOG00000005943 ENSRNOT00000008362 2 1 1 72 6 146784917 146784935 GGCAACTTCACTTCTAGGG 58 146786009 146786028 ATTACAGGTAGCAGCAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Gnaq ENSRNOG00000014183 ENSRNOT00000019174 1 1 1 80 1 233578287 233578305 GTGCTTAGAGTTCGAGTCC 58 233578347 233581062 ATCGACCATTCTGAAGATGAC 58 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 2 1 2 74 6 139637184 139637312 AAAGGTGTCCAGTGTGAGG 60 139637128 139637146 GAGTTTCAGGGACCTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Klhdc3 ENSRNOG00000017495 ENSRNOT00000023979 1 1 1 80 9 16615839 16615974 CCTTGTTTGTACAAAGGGCA 59 16616015 16616035 AAGACATACATGTGATTGCCC 59 NA Rattus norvegicus 81 RGD1311447 ENSRNOG00000016606 ENSRNOT00000022308 2 1 1 97 9 94567580 94567598 GAATTTGCAGTCTCTGGCC 59 94567659 94567802 CCAAGTGATCCTCCATCCT 59 NA Rattus norvegicus 81 Ttc9b ENSRNOG00000018850 ENSRNOT00000025472 1 1 1 112 1 84471911 84471929 CTTCAAGGCCACCTATCGT 60 84472005 84472811 GAACATTGGTGTCTGTGGG 59 NA Rattus norvegicus 81 Sumo3 ENSRNOG00000038489 ENSRNOT00000001637 1 1 1 80 20 11729709 11729729 CAATGAGGCAGATTCGATTCC 60 11727752 11729667 CATCCTCCATCTCCAGCTG 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000044511 1 1 3 80 1 199061459 199061611 CAATGTTCACAGAGGTGCT 58 199061397 199061415 CCCAAGATGATCTCCTCCC 59 NA Rattus norvegicus 81 Rab3il1 ENSRNOG00000020349 ENSRNOT00000027611 2 1 1 84 1 226080800 226082723 ACAACACCAACACATGTGC 60 226082770 226082789 TAATAGTGGCCGTCAGAGTC 59 NA Rattus norvegicus 81 Fam69a ENSRNOG00000023533 ENSRNOT00000030479 3 1 1 90 14 2854697 2857200 ACAACCAGATGTACTTAGGC 57 2857251 2857271 TCAGTTCCAAAGTCAAGATGG 58 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000058495,ENSRNOT00000067034 3 2 2 96 2 124401524 124403291 GGATTTCAGATGCATGGCAG 60 124403349 124403368 ACTAGTGAAGTGTGGCTGTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 1 2 2 80 9 17123211 17123675 GAATATCGGAACCCAGGAGAG 60 17123717 17123735 GTTCCTGGTACACCTGACC 60 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 1 2 2 80 5 63097219 63097237 CCTTTCATTTCAGAGGGCA 58 63097280 63099995 CAGTGGTAAACCTGATCCAG 58 NA Rattus norvegicus 81 Magohb ENSRNOG00000010316 ENSRNOT00000064420 1 1 1 80 4 165518285 165518306 GACGACAGTGAAATTACAAAGG 58 165515890 165518245 TACGATTTCAAGTTCCTGCC 58 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 2 2 2 84 8 76426398 76427600 CTCATACAGTCTCAACAGATCAC 59 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080091 2 1 7 64 20 4087728 4087746 TGTTGCTAACAGTGCTGAG 58 4087774 4089341 GAAATCACTCATCCGCGTG 59 NA DesignRelaxed Rattus norvegicus 81 Pycrl ENSRNOG00000054724 ENSRNOT00000087328 3 1 1 87 7 116952150 116952415 TATGGAGGAGCTGTTACCC 58 116952081 116952100 CATAACCATAGCTCCCTCCT 58 NA Rattus norvegicus 81 Nol8 ENSRNOG00000046968 ENSRNOT00000073035 3 1 1 80 17 14587807 14587828 AAAGTCAGTTGAGCAGATTTGG 60 14587096 14587769 CTTTCTGGGAATTTCCTTGGTC 60 NA Rattus norvegicus 81 AABR07004112.1 ENSRNOG00000016498 ENSRNOT00000022127 3 1 1 81 1 125878135 125878155 AGACTTCCATGGACTCTTACC 59 125878193 125878217 CCACTCCTTATTAGAATGAACTGG 59 NA Rattus norvegicus 81 Tmem179b ENSRNOG00000019341 ENSRNOT00000065694 3 1 1 85 1 224972564 224972778 CCTACACAATGCTGAAACCT 58 224972498 224972516 GAAACTTGCACTGCATGAC 58 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000052101 1 1 2 60 4 122131672 122131690 ACTCTTTGAGGTCCATGTG 57 122131718 122131737 ATGGAGCTTGTCTATCAAGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 3 2 2 80 6 135774212 135774597 GAAGAATTGCACAAGCAATTGG 60 135774153 135774173 CTGCTGATGAGCATCTTTGAG 60 NA Rattus norvegicus 81 Terf1 ENSRNOG00000007291 ENSRNOT00000049741 3 1 1 80 5 2874347 2880644 GGAAAGTCTCTTGATGCACAG 59 2874287 2874308 AATTGAGTCCCAAATCATCAGG 59 NA Rattus norvegicus 81 Naglu ENSRNOG00000032381 ENSRNOT00000052157 2 1 1 99 10 88979712 88979730 GTCACATAGCCTGGTCCAG 60 88979792 88980473 TAATAGCGGTACCTGTTGGG 59 NA Rattus norvegicus 81 AABR07042866.1 ENSRNOG00000013826 ENSRNOT00000018484 2 1 1 80 19 12971553 12971575 AAATGAAAGACAAGGCTCTTCC 59 12971494 12971512 CTATTGCCATCCAGAAGGC 58 NA Rattus norvegicus 81 Mettl4 ENSRNOG00000026280 ENSRNOT00000037587 1 1 1 80 9 119881020 119881038 GAGATATCTGCTGCCACCA 59 119881077 119881913 GTCTTACTACAGTTAAGAAGTGGC 59 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 1 2 2 80 1 18491429 18491447 CTTGAAGGCTCCCAGACTC 60 18491488 18644241 GACAGCAGGAAATAAACCTCTC 59 NA Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 3 2 2 80 18 25651840 25652243 GAGATGAGAAAGCTCATGCC 59 25652285 25652304 CACTTCCAGCTGTAATTGCC 60 NA Rattus norvegicus 81 AABR07063855.1 ENSRNOG00000011040 ENSRNOT00000014668 1 1 1 123 6 52824057 52824075 TCCCTGGAAATGAGCTCTC 59 52823950 52823970 TCTTCTCAGTAGGGCAAGC 59 NA Rattus norvegicus 81 Nus1 ENSRNOG00000000411 ENSRNOT00000000467 1 1 1 80 20 33573476 33577993 AGCTTACTGAGTTCACATGG 58 33578036 33578054 AAGAAAGCCTAACGTGCTG 59 NA Rattus norvegicus 81 LOC689664 ENSRNOG00000049674 ENSRNOT00000047230 3 1 1 80 19 28265701 28266339 TACCTTCTCTAGCAACCTGC 59 28266382 28266400 CTTTCCTGCTTCAGTGGGA 60 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 1 2 2 80 6 108652197 108652427 TGTCCATTCATGAGCTTGGT 60 108652136 108652154 TCTGTCTGTTGGAGGTCAC 59 NA Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 2 2 2 80 14 3438530 3439784 GTGGTCCAAATTACAAAGGGT 59 3438470 3438491 TTCACTACTTGCTTTAGCTGAG 59 NA Rattus norvegicus 81 RGD1561777 ENSRNOG00000050425 ENSRNOT00000072256 1 1 1 80 20 45043473 45043491 GAACCGATCTTCCAAAGCC 59 45043410 45043430 AGGAAGACAGAAACCCACAG 60 NA Rattus norvegicus 81 Vps37b ENSRNOG00000001086 ENSRNOT00000001445 2 1 1 88 12 38020315 38020333 ACAATCTAACAGCGCTTCC 58 38020385 38021265 CTGCCATGTTCTCAGTGTC 59 NA Rattus norvegicus 81 Naglt1 ENSRNOG00000000590 ENSRNOT00000057218 3 1 1 88 20 45096839 45098249 GGATACAGGTGGGAACGTC 60 45096769 45096787 CCAAGGCGAAACTGAAGTG 60 NA Rattus norvegicus 81 Krtap8-1 ENSRNOG00000043471 ENSRNOT00000064583 1 1 1 60 11 29618781 29618799 GCTACCCACTGGGTTACAG 60 29618739 29618758 TAGCCAACTGGAGAGTAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 2 2 2 80 18 38329673 38329691 CTGTCTCAGTTCTTCGCCT 59 38321402 38329630 CATTTGGGTTGTCATCTGCC 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000088284 3 1 2 111 16 3762776 3764795 TATCACACCCAGAAAGCTCTC 60 3762096 3762115 AATAATCCTCCTTCTCCGGG 59 NA InUTR Rattus norvegicus 81 LOC100363136 ENSRNOG00000001570 ENSRNOT00000002137 1 1 1 60 11 28672598 28672616 GGAGCTTCTACACTTCAGG 57 28672556 28672574 CGGACTCCATAACTCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1372 ENSRNOG00000047727 ENSRNOT00000041612 2 1 1 60 10 12643727 12643746 CTGCTCCTGAAACTTTCCTG 59 12643686 12643707 CCTCTGTAAGAATCATCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a47 ENSRNOG00000003020 ENSRNOT00000004070 3 1 1 83 6 132766672 132766691 CCTTTGCCACCTACTTTCTC 59 132766737 132767092 CACCTAGGACATCTGGCTG 60 NA Rattus norvegicus 81 Akirin1 ENSRNOG00000026610 ENSRNOT00000034944 1 1 1 80 5 141423399 141423418 GAGTGAAGCCTGTACTTCAG 58 141418841 141423356 TTCATCCAGAAAGCACCTG 58 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 2 2 2 80 5 165353316 165353935 GTCACTGAGGATTTGTCCA 57 165353979 165353997 CGACAAGGAGATAGAACGG 58 NA Rattus norvegicus 81 Slc44a4 ENSRNOG00000000878 ENSRNOT00000001174 2 1 1 80 20 4607676 4607695 CGTCCTGGATAAAGTCACTG 58 4607738 4607859 AAGAAGGACAGAACACCGA 59 NA Rattus norvegicus 81 Gmpr ENSRNOG00000017250 ENSRNOT00000023613 3 1 1 92 17 19574422 19574441 CAGACCTACTCAGGGATTCC 59 19571796 19574367 GAACATGGCATGCTGTGAC 60 NA Rattus norvegicus 81 RGD1561517 ENSRNOG00000016583 ENSRNOT00000022265 1 1 1 105 3 150052567 150052585 GACCAAAGCACCCAATCAG 59 150052653 150052945 CTTCACACTTGGCTTCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561517 ENSRNOG00000016583 ENSRNOT00000022265 3 1 1 135 3 150052537 150052555 TATCATGGGAAACAGCGGT 59 150052653 150052945 CTTCACACTTGGCTTCTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561102 ENSRNOG00000043412 ENSRNOT00000067777 3 1 1 60 7 29281329 29281347 AAAGTGATAGGTTGCAGCT 57 29281287 29281307 CTTTAGCTTGAGATTCTTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thoc3 ENSRNOG00000000104 ENSRNOT00000000116 2 1 1 80 17 10679506 10681673 TGTATCAACATCCTCAGCTACC 60 10681709 10681732 CTTGATACAGATGCAGTTAGAAGG 59 NA Rattus norvegicus 81 Prpmp5 ENSRNOG00000010485 ENSRNOT00000013943 2 1 1 80 4 166016270 166016288 TTGCTAGTCCTGAGCTCAG 59 166014355 166015217 CTGCTCTAACTCTAACTGCTG 58 NA Rattus norvegicus 81 Sec61b ENSRNOG00000006345 ENSRNOT00000008329 2 1 1 60 5 63197412 63197433 GCGATTCTACACAGAAGATTCC 59 63200281 63200300 CATCACCAGTACTGGGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Chchd6 ENSRNOG00000060248 ENSRNOT00000088753 3 1 1 80 4 121545155 121545173 TGCTTACTGTTCCTTCACC 57 121541580 121545112 TGGACACTTTAAAGTCTCCC 57 NA Rattus norvegicus 81 Rbpj ENSRNOG00000007797 ENSRNOT00000010277 1 1 1 86 5 4878667 4878685 GACTTGTGCATTGCCTCAG 60 4878733 4878755 TCCTTCTACCAGGTATCTGGT 60 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 2 2 2 80 14 77314621 77314726 AAGTTTCAGAACTGGATGAGG 58 77314561 77314579 TTCGGAGAAGATGTTCCAC 57 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000047281 ENSRNOT00000064924 2 1 1 80 X 15400471 15400491 CCCAGTACATGAATGAAGGAG 58 15400530 15400704 ATGAATATGAGTTCGGATGCAG 59 NA Rattus norvegicus 81 Drc7 ENSRNOG00000025860 ENSRNOT00000031064 2 1 1 80 19 10379412 10379737 TGATCACTCGGTTATATGCCA 59 10379352 10379371 TCCTCCTTCAATGAGTTGGT 59 NA Rattus norvegicus 81 Ubald2 ENSRNOG00000010029 ENSRNOT00000013359 1 1 1 81 10 105393378 105396565 CGCAGATGATGTGTACTCC 58 105396610 105396628 CGAAGCTTGGAGAACATGG 59 NA Rattus norvegicus 81 Tshb ENSRNOG00000016793 ENSRNOT00000022575 3 1 1 81 2 205208114 205208511 TATGACACGGGATATCAATGG 58 205208053 205208074 GGTGAAGTCTCTGTATGTACAG 58 NA Rattus norvegicus 81 Akap8 ENSRNOG00000006559 ENSRNOT00000008827 3 1 1 80 7 14331058 14331078 TGAGGATGTGAAGAAGAGACG 60 14330089 14331017 GCAAACTGAATCCTGTCAGC 60 NA Rattus norvegicus 81 Ccdc177 ENSRNOG00000033973 ENSRNOT00000040965 3 1 1 186 6 104408326 104408344 CAGGTAGGAAGAGCCACTC 59 104408158 104408176 CCTAGTGGGTTAGGTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk11 ENSRNOG00000018742 ENSRNOT00000025055 3 1 1 82 1 99712269 99713918 AATTATCTACAGAACCCAGGGA 59 99713961 99713979 AGCAAGTGCAATGAATCGG 59 NA Rattus norvegicus 81 Noxo1 ENSRNOG00000025117 ENSRNOT00000029652 1 1 1 82 10 14064887 14065185 TTAGGCAGCTCCAGAAGAC 59 14065230 14065249 CTTGGGAAGAACTCGTTCAG 59 NA Rattus norvegicus 81 AABR07027088.1 ENSRNOG00000046068 ENSRNOT00000075373 3 1 1 80 17 14091560 14091581 CTGTGTCTATGGACTAGAGCTG 60 14087378 14091520 CGAGATGTTGCAACTCTGTC 59 NA Rattus norvegicus 81 U8 ENSRNOG00000056054 ENSRNOT00000083120 3 1 1 60 10 55656467 55656485 GAGCTTGCATGATCTGCTG 59 55656508 55656527 AATCAGGATGTTGTCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000084588,ENSRNOT00000068407 1 2 2 80 4 156756719 156758823 GTGATCTGCTTAGACGGAG 58 156758866 156758885 TCTCACTTCCAATCTTCCTG 57 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201,ENSRNOT00000084049 1 2 2 83 4 117261660 117261808 CTGTCACCTACAGGAGTGC 60 117261595 117261613 GGGAGACAATGTCTCTGCA 59 NA Rattus norvegicus 81 Rn60_10_0702.1 ENSRNOG00000052330 ENSRNOT00000090215 3 1 1 60 10 70476619 70476638 CCTAACACTAAAGCAGACGC 59 70476660 70476679 GGTAATGCCTACTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 1 1 2 135 7 54022268 54022288 GGAGCAGTTATGTGTACACAG 59 54022613 54024193 CAGATTGAGCTTCACTTCCA 58 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 3 2 2 80 8 22944405 22944425 CGAGATCTCAGAGAATCTCCT 58 22944464 22944829 TTCATCTTGGTAAGAACCTTGC 59 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 1 3 3 80 2 124134788 124138856 GAAGATATTGGAGACACAGCA 58 124134728 124134746 GATGCTCAACAGAGACCTG 58 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 3 3 3 80 2 124134790 124138860 TGGAGAAGATATTGGAGACACAG 60 124134732 124134753 CTCAACAGAGACCTGAATTCTG 59 NA Rattus norvegicus 81 Hsbp1l1 ENSRNOG00000059055 ENSRNOT00000078797 2 1 1 80 18 76752533 76752551 CCGAGAACCTACTTCAGGA 58 76750699 76752492 TTCCCATTTCTTCCATTCTGAG 59 NA Rattus norvegicus 81 Tmem128 ENSRNOG00000005346 ENSRNOT00000007115 2 1 1 86 14 77275519 77277889 CACACCAATAGTTGGTTTCTC 57 77275453 77275473 CCATTCCAGATAGACTATGCA 57 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 1 2 2 80 3 123783602 123783622 GTGGCTTCCAAGATAAACCAG 59 123783663 123785604 CCTCCGAATTCTCTACTGGG 59 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 2 2 2 80 3 123780904 123782334 GTGACCAGGATCGATTACG 58 123782378 123782396 GCTGGAGCGTATTGAAGAG 58 NA Rattus norvegicus 81 Nrp2 ENSRNOG00000031232 ENSRNOT00000042562 1 1 1 80 9 69579752 69580923 ACTGCATGGAACCCATCTC 60 69606188 69606210 CATCAATCTCATCTTCATAGCCC 59 NA Rattus norvegicus 81 Colgalt2 ENSRNOG00000028207 ENSRNOT00000030109 1 1 1 80 13 69896010 69899172 GGGAACTGATTTACATCGGTC 59 69899211 69899232 CAACGAGATTTACAACATTGGG 58 NA Rattus norvegicus 81 Tgfa ENSRNOG00000016182 ENSRNOT00000057441 1 1 1 149 4 118040387 118040407 CTGTCCTCATTATCACCTGTG 58 118041817 118042326 TTCAGACCACTGTCTCAGAG 59 NA Rattus norvegicus 81 Nup210 ENSRNOG00000005390 ENSRNOT00000008888 2 1 1 80 4 122726954 122729459 TTTGCAGAAGACATCACTACAG 59 122726895 122726914 AGAGACAATCTGAATGCCGT 60 NA Rattus norvegicus 81 Hmgcll1 ENSRNOG00000011193 ENSRNOT00000014926 3 1 1 84 8 83114877 83131459 AGATGGGTACCACAGATGG 59 83131506 83131525 GTACAAGGACAGGATAGCGA 59 NA Rattus norvegicus 81 Hdac5 ENSRNOG00000020905 ENSRNOT00000055187 3 1 1 82 10 90141830 90141849 TACAACGTAAATGTGGCGTG 59 90141606 90141785 ACTACTGTCCTGAAGGCTG 59 NA Rattus norvegicus 81 AABR07021086.1 ENSRNOG00000022174 ENSRNOT00000032908 3 1 1 80 13 56262897 56262915 ATCCATTGTGGATCTGGCA 59 56262958 56262991 CCTTTAGTAGGCCCTACCAC 59 NA Rattus norvegicus 81 Tmem41a ENSRNOG00000046283 ENSRNOT00000074826 3 1 1 80 11 82738460 82738478 TGGTTCTTGAACCTCTCGG 59 82738521 82740402 TGGGATCAAACCGATAAGCA 60 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 1 2 2 80 16 8215853 8215871 GTCTCCATCAGTGAAGAGC 58 8215915 8217074 AAGAAATCAACCCACTGGC 58 NA Rattus norvegicus 81 Poldip2 ENSRNOG00000009252 ENSRNOT00000013100 3 1 1 81 10 65785699 65785717 CTCAGACAGAAGCTGTGAC 58 65785762 65785988 CTGACATAGTCCAAGCCTG 58 NA Rattus norvegicus 81 Ptprn2 ENSRNOG00000005003 ENSRNOT00000006942 1 1 1 80 6 144682715 144694624 TCGTCCAGTTAAGGGTGAG 59 144694668 144694686 GGAGGATAGGTCAGTGCAG 59 NA Rattus norvegicus 81 Klk1c12 ENSRNOG00000047662 ENSRNOT00000025631 3 1 1 83 1 99300040 99300976 CTGCTATAGCCACAATTACCA 58 99299977 99299995 TTGACAAACCGGTACTGTG 58 NA Rattus norvegicus 81 Mustn1 ENSRNOG00000017369 ENSRNOT00000023330 2 1 1 101 16 6964047 6964067 TGAAGGAAGAAGACCTGAAGG 60 6964130 6964324 AGCCAGCTTGCTCATAGTC 60 NA Rattus norvegicus 81 Vangl1 ENSRNOG00000016477 ENSRNOT00000022182 1 1 1 80 2 204602611 204607566 AAGTTCAGGATGACAACTGG 58 204602550 204602572 CAATGTCCTCTTGGGATATACTG 59 NA Rattus norvegicus 81 LOC100910787 ENSRNOG00000051167 ENSRNOT00000076562 3 1 1 60 8 41285460 41285480 CTGTGGAGAATGACTCTTCTG 58 41285500 41285520 TCAGGTTGGTCTGTTAATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim45 ENSRNOG00000015347 ENSRNOT00000043146 3 1 1 85 2 203304809 203304830 GCCAAGGCTATGAAGTATATGG 59 203304874 203306459 TCTATGGAGATCTTCTCCCTG 58 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354,ENSRNOT00000064751 2 3 3 82 11 34071530 34073121 CAGTTAAAGGCAAACAACATGG 59 34073161 34073182 TCTTGCTTATTATGAGTCGGCT 60 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548,ENSRNOT00000079783 1 2 2 80 19 57433003 57433021 ATTCAGTCATTGTGGGAGC 58 57432808 57432960 CAAAGTCGACTAACTTCCCT 57 NA Rattus norvegicus 81 Atxn7l3 ENSRNOG00000020930 ENSRNOT00000028407 3 1 1 80 10 90237662 90237903 AAGATGTGCACAAGGTCAC 58 90237600 90237619 GGGCCCAAGGAAATAAATCC 59 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 2 2 2 80 5 122683696 122683717 GAGCGTTATGATTTCTTTGCTC 59 122683756 122687648 CATGTAATCCGTTACACCAGG 59 NA Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000071945 3 1 2 122 6 138550227 138550245 AATCCCGACTGAGCATCAG 60 138549590 138550146 GGTCTTTATATCTCACTGTGTCTC 59 NA Rattus norvegicus 81 Tonsl ENSRNOG00000014703 ENSRNOT00000019754 3 1 1 80 7 117699876 117699896 GATTACCACAAGGCTGTACAC 59 117699549 117699835 CCAAGTCTTAGCTTCCTCCA 59 NA Rattus norvegicus 81 Ovch2 ENSRNOG00000019794 ENSRNOT00000026807 2 1 1 80 1 172012321 172013082 GGGAGAATGAAATAGCTCGG 58 172012260 172012280 GGAAGTTGATGAGCATTACAC 57 NA Rattus norvegicus 81 Lrrc8b ENSRNOG00000002129 ENSRNOT00000002897 1 1 1 80 14 5423403 5423421 TCTGACCTTCATTCCCGAG 59 5419202 5423362 AGCATCTCGATGTTATTGTTGG 59 NA Rattus norvegicus 81 Tmem97 ENSRNOG00000022657 ENSRNOT00000011808 3 1 1 93 10 65820456 65820474 TACTTCGTCTCGCACATCC 60 65813551 65820399 GCAACAGGTTGCTGAACTC 60 NA Rattus norvegicus 81 Gpr162 ENSRNOG00000016143 ENSRNOT00000021670 3 1 1 103 4 157376157 157376453 CTATTTACAGGTTCCTTTGTCCC 59 157376076 157376094 CAGACGATGACCACTTGTG 59 NA Rattus norvegicus 81 AC096201.1 ENSRNOG00000052304 ENSRNOT00000091812 3 1 1 64 1 67138578 67138599 GGAACTGGAAAGTATCATCCTG 59 67141476 67141497 GTTGTCGATATGATGAAAGAGG 57 NA DesignNoJunction Rattus norvegicus 81 Foxp2 ENSRNOG00000054508 ENSRNOT00000087146 1 1 1 80 4 41907610 41908712 CCATGTCATCAGAGATTGCC 59 41908752 41908773 TGAGAGTTGCATAAGTAAAGGG 58 NA Rattus norvegicus 81 Wdr54 ENSRNOG00000009324 ENSRNOT00000013128 1 1 1 87 4 113986909 113987021 TGCTTCTTCAGTACAGGCT 59 113986542 113986560 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 3 1 1 60 8 76479837 76479859 GGGAAATAGCAGAATTTGTGGT 59 76479798 76479818 TTCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298,ENSRNOT00000060218 3 2 2 81 17 27543466 27543484 TGCAGTGTATGCAACAAGC 60 27542431 27543422 TGTATGGCCTTTCTCCTGTG 60 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000016827,ENSRNOT00000090565,ENSRNOT00000017108 2 4 4 80 7 120522754 120527878 ATGTCAAGAAACCCAAGGTG 58 120522693 120522711 CGTAATTCCGGAAGAGGTG 58 NA Rattus norvegicus 81 Gipc2 ENSRNOG00000042152 ENSRNOT00000065811 3 1 1 81 2 257308279 257336687 CCAAGAAGGCATTTGAAATAGG 58 257308219 257308238 AGAGTCCCTCTTGAAGTACC 58 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714,ENSRNOT00000064858 2 2 2 81 5 62225984 62230280 GCATCTGAAGGATGACATGG 59 62225922 62225940 CCAGATCTTGGTGACCTGG 60 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714,ENSRNOT00000064858 3 2 2 82 5 62225984 62230280 GCATCTGAAGGATGACATGG 59 62225921 62225939 TCCAGATCTTGGTGACCTG 59 NA Rattus norvegicus 81 Rn60_1_0959.1 ENSRNOG00000051237 ENSRNOT00000076542 3 1 1 80 1 94687435 94687454 GGCTTTGGAAATTCTCTGGT 59 94687495 94688852 CTCCATGTACCCTTTCATGTC 59 NA Rattus norvegicus 81 Edem3 ENSRNOG00000028358 ENSRNOT00000017858 3 1 1 80 13 69175309 69175329 GAATAAATACGCTCGAGTGCC 60 69175368 69180755 GAATCCATTCTGTCCTCATGAC 59 NA Rattus norvegicus 81 Rufy1 ENSRNOG00000003536 ENSRNOT00000004740 2 1 1 80 10 35901891 35904509 AGCTTCAAGAAGAGCTTTCAG 59 35901831 35901851 CATTCTGTTCTCTTAGCTGCT 58 NA Rattus norvegicus 81 Dnmbp ENSRNOG00000050742 ENSRNOT00000074810 2 1 1 80 1 263643203 263644348 GTCGGAAGGATCTAGTGCT 59 263643141 263643159 AGTGGATGTTGAGCTTGGA 59 NA Rattus norvegicus 81 Oas1i ENSRNOG00000047076 ENSRNOT00000041741 3 1 1 81 12 41157497 41161587 GATGTCCTAGGTCATGTAAGCA 60 41161629 41161647 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 Olr1344 ENSRNOG00000033704 ENSRNOT00000046464 3 1 1 60 9 99667592 99667610 TCTTCCTCCTCTTCCTGCT 60 99667550 99667569 AGGATGATGGCTAGGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139,ENSRNOT00000015119 1 2 2 93 2 148609948 148609967 AGCTATTCCTGTTGATGGTG 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 AABR07064590.1 ENSRNOG00000050408 ENSRNOT00000072471 1 1 1 60 6 86160635 86160653 AGAAGCCTACAGAACTCCA 58 86160593 86160611 AATTATGTGACGGGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a23 ENSRNOG00000017210 ENSRNOT00000023149 2 1 1 80 17 31237337 31237355 GACTCAAATTGCGAGTGCC 60 31237399 31275824 AAGATCCCACTTGCTGACC 60 NA Rattus norvegicus 81 Fam110d ENSRNOG00000016491 ENSRNOT00000022130 3 1 1 146 5 152473807 152473825 CTGAAACTCAGCGTCTCCA 60 152471927 152471945 CGATGGTGTAGTGGGTGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adra1d ENSRNOG00000021256 ENSRNOT00000028877 1 1 1 195 3 124144127 124144145 GAACACAGAGTAGCAAGGG 58 124130888 124130906 TTGAAGACACCCTCTGACG 59 NA DesignNoJunction Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 1 3 3 80 6 76461468 76461489 TCTCACCAATATAGGAGGAAGC 59 76455476 76461432 CAGTGATTTGTAAGGTTTACCTCC 60 NA Rattus norvegicus 81 Msgn1 ENSRNOG00000028518 ENSRNOT00000006482 3 1 1 61 6 36876433 36876452 AGTCAAGATGTCTGTCCAGC 60 36876391 36876409 TCCGCATCCTGAGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498705 ENSRNOG00000033993 ENSRNOT00000044670 1 1 1 90 17 9972918 9975346 AGTGAAGAGGGAGAACTCCT 60 9975399 9975417 TAAGTTCACAGCCCTGCTC 60 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 2 2 2 80 1 184324976 184324997 AGATTGGAATGAACATGATGGC 60 184325038 184349549 TGAAGTGTAGCCTCTGCTC 59 NA Rattus norvegicus 81 Hvcn1 ENSRNOG00000001270 ENSRNOT00000001712 2 1 1 80 12 39823233 39823254 GGTTAAAGCAGATAAACCTCCA 59 39822895 39823194 CAATTTCTTGTTCCTTCTCGG 58 NA Rattus norvegicus 81 Trpc7 ENSRNOG00000012727 ENSRNOT00000016982 2 1 1 80 17 8259654 8276760 GATACCAGAAGATCATGAAGCG 59 8276799 8276819 CGTTGACTTCATCATTCTCCC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 3 3 3 80 4 22102453 22102471 GCTGGAATGAACCTGTTGG 59 22102514 22103245 GATATTCTCTTGCCTTCGCC 59 NA Rattus norvegicus 81 Pelp1 ENSRNOG00000019268 ENSRNOT00000026102 2 1 1 80 10 56996228 56996246 CTGTTTCGGGACATCTCCA 59 56995974 56996184 TGATTGCTCACACTCTGGT 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335,ENSRNOT00000078010,ENSRNOT00000035448 3 3 3 81 17 21639890 21639908 CCTGGACAGGTAACCTCAG 59 21637131 21639845 TCATGTACGTAGTGACCGT 58 NA Rattus norvegicus 81 Gdi1 ENSRNOG00000056870 ENSRNOT00000089814 3 1 1 80 X 156405471 156405490 GGCAGCTTTGTATACAAAGG 57 156404999 156405428 GCCCATCAGATTAGAAGCC 58 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991,ENSRNOT00000087241 2 3 3 81 4 58832927 58833951 AGAGGAAGGACCAACAACG 60 58832864 58832882 ATCACTTCCAAGGTTGGGT 59 NA Rattus norvegicus 81 LOC100910483 ENSRNOG00000048545 ENSRNOT00000017253 2 1 1 80 9 113835289 113835308 CATCCATGAAGCGTAAACTG 57 113828860 113835246 CTGGGTCTGAATCTGTGTC 58 NA Rattus norvegicus 81 Adamts1 ENSRNOG00000001607 ENSRNOT00000002187 3 1 1 81 11 25346044 25346286 CATGAAGCACTTTGCTACTCC 60 25345983 25346001 TCCACCACAGGTTCTTGAG 59 NA Rattus norvegicus 81 Ssr4 ENSRNOG00000053172 ENSRNOT00000083557 3 1 1 80 X 156997790 156997810 GATGCCGTCATTTCTACAGAG 59 156996748 156997749 AAGAGCCATATTCTGGACCC 59 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 3 2 2 80 11 17549423 17549445 CTTTACCAGTGGAATGATGACAG 60 17549482 17553326 TTCTGTTGGATGAATCTCTGGT 60 NA Rattus norvegicus 81 LOC100911926 ENSRNOG00000047388 ENSRNOT00000070942 1 1 1 80 10 111722307 111722326 TTTCCTTGTTTGCCACAGAG 59 111722365 111733198 GGAGGGAATCAATGTTTCTTCTG 60 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 2 2 2 80 13 73702260 73702279 ATGAACCTTCTTCCCAACCT 59 73700334 73702219 CACTCATCACTGAAGTCTCTG 58 NA Rattus norvegicus 81 Kcnh4 ENSRNOG00000018790 ENSRNOT00000025518 3 1 1 83 10 88664603 88664621 AACCGGACAGTTCTACACC 59 88663631 88664559 CTCAAACACGTTACTATTGGCT 59 NA Rattus norvegicus 81 Arfip2 ENSRNOG00000018440 ENSRNOT00000025159 2 1 1 81 1 170468796 170468988 GGCATCAACACATATAAGTGCA 60 170468736 170468755 CTAGCTCCAGATCCACAGTC 59 NA Rattus norvegicus 81 Fam163a ENSRNOG00000024825 ENSRNOT00000036392 2 1 1 80 13 73746059 73746080 GAATCCTAGCTACAGTGATCCT 59 73745040 73746021 CCTTCTTGCAGCAGTAATACTG 60 NA Rattus norvegicus 81 AABR07033279.1 ENSRNOG00000050713 ENSRNOT00000009911 1 1 1 80 11 15089325 15089345 AGAGATATCCTTGCTGTGGAG 59 15089387 15089694 TTCTTGGAGGTTGGGTTCC 60 NA Rattus norvegicus 81 Syce3 ENSRNOG00000042056 ENSRNOT00000064328 2 1 1 60 7 130368722 130368740 GGCTGTTGGAAGAGATGGA 59 130361081 130361099 ACCATATCGTAGGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Rmnd5b ENSRNOG00000047396 ENSRNOT00000075555 3 1 1 80 10 34980524 34980543 CCCTATCAAGCTCATCTGTG 58 34980384 34980482 GGACACTTTAGCTTTCCTCC 58 NA Rattus norvegicus 81 Sec23ip ENSRNOG00000020411 ENSRNOT00000027665 1 1 1 80 1 200204362 200204382 TTCTTCAAGAGAAGCCAATCG 59 200204424 200205013 CTTCGGACTCCCAATAGCA 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 1 1 2 96 10 88537805 88538475 CCATGTTGTGGGTTCTGAG 59 88538535 88538553 ATAGAAACGCACCTGTTCC 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 2 2 7 80 19 15094500 15095179 CACCTATCCACCTATGTGC 57 15095222 15095241 ACTTTCTCCTTTCTGTTGGT 57 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 1 2 2 81 4 123609822 123610040 CCAGAGCATTCCAGAGGAG 60 123610085 123610103 GATAGTCAGGCCCAGAGTG 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913 3 2 3 80 1 168945645 168945663 GGCTACTGTTAATGGCCTG 58 168945706 168945844 TAGACAATAAGCAGACTGGC 57 NA Rattus norvegicus 81 Ppp3r2 ENSRNOG00000005368 ENSRNOT00000007290 2 1 1 80 5 64946099 64946120 GATATCCTTTGAAGAGTTCCGT 58 64945783 64946059 TGACCGTGATCTACAAACAC 58 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 2 1 4 82 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353560 167353580 GAGATCTGAATCTGAGTCCTG 57 NA Rattus norvegicus 81 Prr18 ENSRNOG00000024149 ENSRNOT00000033528 2 1 1 133 1 52991558 52991576 CTCTAGCTGTGGCTGTCAG 60 52991443 52991461 GTGCTTCTCATTGAGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v1d ENSRNOG00000009080 ENSRNOT00000012101 1 1 1 80 6 102039537 102039555 ATGGGTGAGGTGATGAGAG 59 102038065 102039495 TATAACTGTGGTGCTGAAGTC 58 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637,ENSRNOT00000084712,ENSRNOT00000025795 3 3 6 80 1 41917414 41917435 GTTGAAGAACATCAAGGATCAG 58 41916016 41917375 TCATTTCTCATCTCATCTGCC 58 NA Rattus norvegicus 81 Tmem230 ENSRNOG00000021263 ENSRNOT00000028886 3 1 1 60 3 124877125 124877144 CAGACGATGGCTACATTGAC 59 124874794 124874813 GCCTTGTAAGGGATCTTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823,ENSRNOT00000043387 1 2 2 80 1 225948520 225948540 GACAACAAGGACTTCATGTGG 60 225948124 225948481 TGGCTCATTGTTGAATTCTCTG 59 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758,ENSRNOT00000056430 2 2 2 80 9 111855475 111855496 GTGGAGTGTATTCATCTTCTGG 59 111855534 111859808 TGTATCTCCCATAATTCAGTGC 58 NA Rattus norvegicus 81 Dgat1 ENSRNOG00000028711 ENSRNOT00000039795 2 1 1 80 7 117571022 117571041 TCTTTGTTCAGCTCAGACAG 58 117569028 117570981 ATTACTCAGGATCAGCATCAC 58 NA Rattus norvegicus 81 Myd88 ENSRNOG00000013634 ENSRNOT00000018341 2 1 1 83 8 128024561 128024580 TGTTTCTGACGATTACCTGC 58 128024243 128024515 TTCTGTTGGACACCTGGAG 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 2 1 2 142 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120116 4124690 AGACACTGATCCTGCTCTC 59 NA Rattus norvegicus 81 Alox15 ENSRNOG00000019183 ENSRNOT00000026038 1 1 1 80 10 56962051 56962069 CTACCTGTGGTTGGTTGGA 59 56960708 56962007 AATTCTGCTTCCGAGTCCC 60 NA Rattus norvegicus 81 Mir1249 ENSRNOG00000041492 ENSRNOT00000063245 3 1 1 69 7 125861244 125861262 CAAGTTCCCTATGCCTGGA 59 125861193 125861212 TCTTGAAGGACGAGTAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txndc5 ENSRNOG00000013469 ENSRNOT00000018310 2 1 1 84 17 26944691 26946875 AAGATTGGCAAGGTTGACTG 59 26946922 26946940 GAAACCAGAGCAGAGTTGG 59 NA Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000059086 1 1 2 105 8 55504520 55504901 GACTCTTTGTCCCTACCCA 58 55504970 55504988 GGTACTCAGTTTCTCGTGC 58 NA InUTR Rattus norvegicus 81 Crisp1 ENSRNOG00000013612 ENSRNOT00000040542 2 1 1 80 9 24371374 24373652 CTCTCAGACATCTCAAACTGG 58 24371314 24371334 CAATTTCTTCCTGTGGTTCAG 58 NA Rattus norvegicus 81 Proser1 ENSRNOG00000010980 ENSRNOT00000014614 3 1 1 80 2 142693292 142693310 AGAAGTGGTGAGCATCCTG 59 142693353 142694904 ACAATGTTTGAGGCCAAGAG 59 NA Rattus norvegicus 81 Spt1 ENSRNOG00000036825 ENSRNOT00000055268 3 1 1 80 7 145337323 145338058 TTCTAGTCTCTTGCCAGGAC 59 145336474 145336492 GAGTTCCAGAGTCAGTGGT 59 NA Rattus norvegicus 81 AABR07062268.1 ENSRNOG00000027431 ENSRNOT00000038077 1 1 1 80 4 166615818 166616991 GGACTACAGGCTGGATCTC 59 166615756 166615775 TTGGTCACCATTTGCATAGC 59 NA Rattus norvegicus 81 Qrich2 ENSRNOG00000025254 ENSRNOT00000034817 2 1 1 80 10 105405562 105405667 ACATCGAAGTGCTGTATCAG 58 105405501 105405519 CGTCAATCTCCATCTCCAG 57 NA Rattus norvegicus 81 Elovl4 ENSRNOG00000009773 ENSRNOT00000012999 3 1 1 81 8 91321758 91338538 TGGTCCATTGCAGATAAACG 59 91321696 91321719 GATAGAGTGTGCTTATGCTTAGTG 60 NA Rattus norvegicus 81 Slc16a1 ENSRNOG00000019996 ENSRNOT00000027234 3 1 1 84 2 207119542 207119561 ATATTCAGTGCAACGACCAG 58 207119608 207122617 TACTGCTGATAGGACCTCC 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 1 5 5 80 11 27865914 27867936 CACTATTCTGGAAGAGCCCT 59 27865853 27865874 CAATATCCTTCAAACCTGTCGT 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315,ENSRNOT00000089041 3 2 2 94 16 10948564 10948582 CATCTTCAGGGCCATTCGA 60 10948186 10948204 ATTCACTCTGTAGCCGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Spata31d1d ENSRNOG00000027014 ENSRNOT00000039803 2 1 1 83 17 5321192 5321963 TCAAGGAATCAGAAAGCAACAG 59 5322566 5322586 GCTTCTCCGTGTAAGTTTCTG 59 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000087470 3 1 6 98 20 4611864 4613893 TCCACAGACCAGGAAACAG 59 4613954 4613973 TCACTGAGGAGACAGAAGAC 59 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 2 3 6 60 20 4611846 4611864 TTCATCGCTATGAGGAGGT 58 4612226 4612244 CAATGAAAGCCGTAGAGGA 57 NA DesignNoJunction Rattus norvegicus 81 RGD1560883 ENSRNOG00000013821 ENSRNOT00000018479 3 1 1 77 6 146470295 146470316 TGGAGATTTGACAAACTTCCTC 59 146467254 146467274 TCCAGGATCATTTCTTCATGG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1564378 ENSRNOG00000029291 ENSRNOT00000040470 1 1 1 60 2 125257530 125257549 GCCATGAAGAAAGTAGAGGA 57 125257572 125257590 TGTTGACCTTGACATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs16 ENSRNOG00000027024 ENSRNOT00000032236 1 1 1 94 13 71180113 71180488 CCTGGAAAGAGCCAAAGAG 58 71180546 71180564 ACTCGAATTTGCCGTTACC 59 NA Rattus norvegicus 81 Vps28 ENSRNOG00000014633 ENSRNOT00000019707 1 1 1 81 7 117685711 117686318 CCCAATGAGTACACTGCAG 58 117685648 117685666 TGATCTCTGAGCCTTGGAC 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 1 3 3 82 X 15755723 15755744 GGACACTCAATGAAATCTACCA 58 15755517 15755680 GATGGCATTCTTCCAGGTG 59 NA Rattus norvegicus 81 LOC100363436 ENSRNOG00000049804 ENSRNOT00000072374 1 1 1 80 4 130649757 130649781 GTACTACTCTTCAGATGAGAACC 58 130649697 130649715 TGGCAAGATTCAAAGAGGC 59 NA Rattus norvegicus 81 LOC100363436 ENSRNOG00000049804 ENSRNOT00000072374 3 1 1 80 4 130649761 130649785 ACAGGTACTACTCTTCAGATGAG 59 130649701 130649720 AAGATTCAAAGAGGCTGCAG 59 NA Rattus norvegicus 81 Fam120a ENSRNOG00000016779 ENSRNOT00000060568 1 1 1 80 17 16141535 16141554 GATTATGTCCGCAACATCCA 59 16141595 16143056 TGTTCTAGACTGTGAATGCTG 58 NA Rattus norvegicus 81 Rn60_1_1730.1 ENSRNOG00000051149 ENSRNOT00000076834 1 1 1 60 1 166728169 166728188 GCAGAGTTATTGGAAGTGGT 58 166728211 166728229 GCCTTTCTCAGGTAACCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1359508 ENSRNOG00000038330 ENSRNOT00000058366 1 1 1 80 2 128693055 128693076 AGAGTTTATGAAGCGCTTTACC 59 128693112 128700164 ATATTCTAGACGATGGAAGTCAGG 60 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788,ENSRNOT00000040482 2 3 3 80 3 48305591 48305610 ACTCAGTATACACAGAGCGT 58 48295616 48305549 TCATGACTGTTGAGTTCCTG 58 NA Rattus norvegicus 81 Tmem145 ENSRNOG00000020489 ENSRNOT00000027783 2 1 1 80 1 82176239 82176257 CTGGAGACAGATGTGACCT 58 82176301 82176420 GCCTTTCAGCAAGTATCCA 58 NA Rattus norvegicus 81 Gpa33 ENSRNOG00000003740 ENSRNOT00000004986 1 1 1 80 13 84355000 84359645 CCTCTTAGTCCTCGTACCAC 59 84359687 84359706 GTCAGTTGGATGTTGTTCCC 59 NA Rattus norvegicus 81 Nudt10 ENSRNOG00000046053 ENSRNOT00000048236 3 1 1 86 X 17172097 17172115 TGGAGAAACTGAAGCTGGG 60 17172164 17213428 TCTCTGTTCATTAGGGCTCG 59 NA InUTR Rattus norvegicus 81 Cdkl4 ENSRNOG00000040266 ENSRNOT00000061975 1 1 1 80 6 3254174 3254660 AAACCCAAACGGAGTTTCTG 59 3254113 3254133 TGTTTGTGGCAGAAGTTAAGG 59 NA Rattus norvegicus 81 Il17f ENSRNOG00000012509 ENSRNOT00000016717 3 1 1 80 9 26886547 26887924 TGGGATTACAATATCACCCG 57 26886486 26886504 GATACAGCCTGAGTGTCTG 57 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 1 2 2 80 9 94229013 94229114 TAGCGTCATTCCAGTGGAG 59 94229157 94229176 AGCTTCTTGGCAACATTCAG 59 NA Rattus norvegicus 81 Lrrk1 ENSRNOG00000012730 ENSRNOT00000016959 1 1 1 80 1 127177156 127177174 GTCGTCCTTCTTCTCATCC 57 127175042 127177113 ACCGTGTAATTCCTTGACTC 58 NA Rattus norvegicus 81 Adm2 ENSRNOG00000029830 ENSRNOT00000044854 1 1 1 89 7 130297297 130297897 GACTGAGACCCAGAGAACC 59 130297950 130297968 GAGGCTTCCAGACTACAGG 59 NA Rattus norvegicus 81 Zbtb5 ENSRNOG00000012726 ENSRNOT00000017046 2 1 1 92 5 60558174 60558193 CAAGCTTGGGAAGACAAGAG 59 60543044 60543062 TCTGCTCAAAGTGACCAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 C8a ENSRNOG00000007697 ENSRNOT00000067850 2 1 1 82 5 124359476 124359495 CAGTGCTATTACATACCGGT 57 124354876 124359431 GATAGATGGGCTGCATCTC 58 NA Rattus norvegicus 81 Crnkl1 ENSRNOG00000040045 ENSRNOT00000061588 3 1 1 60 6 18350392 18350410 GAAGTCTATGAGCGAGCCA 59 18350350 18350368 GTTTCCAGTGCCTCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkrn1 ENSRNOG00000009280 ENSRNOT00000013124 2 1 1 80 4 67187875 67188627 GAGAGCAAGATCATAAAGTCCTG 59 67187817 67187836 CTCTTCCACCCAGTACTCAC 60 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 2 2 2 80 7 18536599 18539173 GTCAAAGAAGATCCTGATGGT 58 18536422 18536442 TGCTACAAATACTGTGCTTCC 59 NA Rattus norvegicus 81 Ptdss1 ENSRNOG00000052289 ENSRNOT00000087143 1 1 1 81 7 71316340 71316358 CGAGCAGGTTAAATCCCTG 58 71316402 71319152 GGCATACTCCATGATGTCTG 58 NA Rattus norvegicus 81 Gps2 ENSRNOG00000016360 ENSRNOT00000022041 3 1 1 80 10 56525441 56525561 GCGAAAGGAACAGAGTGAC 59 56525603 56525623 AGGTGAGTTCCTGTATGAACC 60 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 1 2 2 89 1 87930023 87930041 TTATCTGCCATGTCGTGGG 60 87928649 87929970 TCAGCTGGTTGTCAGTCAG 60 NA Rattus norvegicus 81 Pkd2l1 ENSRNOG00000012591 ENSRNOT00000068007 3 1 1 80 1 263926948 263926967 ACATACTCAGAGGTCAAGGA 58 263926677 263926905 GCTGTAGCTCTGTTTCAGG 58 NA Rattus norvegicus 81 Polr3h ENSRNOG00000004471 ENSRNOT00000005943 1 1 1 80 7 123148972 123153244 ACATACCAAAGTGCATTTCCG 60 123148912 123148930 CTGCAGCCTTTGATCTTCC 59 NA Rattus norvegicus 81 C1qtnf2 ENSRNOG00000003870 ENSRNOT00000005161 1 1 1 88 10 29080421 29080439 AATGGTGGGAAGAATGGGT 59 29080491 29083237 CAGGTGGACCTTCTTCTCC 59 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 2 2 2 81 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329876 87329896 TTTAGAGGAGTCGACTGATGG 59 NA Rattus norvegicus 81 AABR07011951.1 ENSRNOG00000034093 ENSRNOT00000047593 2 1 1 60 2 177652026 177652045 GGTCAACCATTTCATTGCTG 58 177652067 177652086 CTTGTTCTCACTGATGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf18 ENSRNOG00000048389 ENSRNOT00000072297 3 1 1 97 10 18053976 18053994 TACCTTCGGGAGTCAAGTC 58 18047363 18053915 TAGTACCATCAGGCTTCCC 58 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000064068 1 1 2 90 13 70175094 70175112 GAACAAGTTCGTGGACGAG 59 70175166 70177309 CATGTTTCCTTGCCGTAGG 59 NA Rattus norvegicus 81 Adsl ENSRNOG00000018655 ENSRNOT00000025193 2 1 1 80 7 122178839 122179373 TTTACCAAAGCTTGCTAGAGTG 59 122179413 122179432 GTGAAACCTAATGTGGGCAG 59 NA Rattus norvegicus 81 Ogfrl1 ENSRNOG00000014142 ENSRNOT00000019062 2 1 1 80 9 29635061 29640397 AACATCTGAATGAGTCTCAGCA 60 29635002 29635020 AACTCTCGTACCCAAGCTC 59 NA Rattus norvegicus 81 Htr2b ENSRNOG00000017625 ENSRNOT00000023829 2 1 1 85 9 93113994 93116200 GTTAATTTCAATAGGCATCGCC 59 93113930 93113948 GCTCACAGGTGATGTTGTG 59 NA Rattus norvegicus 81 Iapp ENSRNOG00000012417 ENSRNOT00000016614 2 1 1 64 4 176511047 176511065 GTTCTCCTCATCCTCTCGG 59 176511093 176515745 TTGGTACCACTTCCGACAG 59 NA DesignRelaxed Rattus norvegicus 81 Ubxn2b ENSRNOG00000009137 ENSRNOT00000012551 2 1 1 80 5 19297562 19298255 AATCAGCTGCAAGATGTTCAG 59 19298297 19298315 GTAAGGCCTCAGTTCTCCA 59 NA Rattus norvegicus 81 B3gnt7 ENSRNOG00000018267 ENSRNOT00000024578 3 1 1 203 9 93326405 93326423 AAGGGTTAACCTACCTGGG 58 93328010 93328029 GGCATACACTCTTGTAGAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Plekhs1 ENSRNOG00000016926 ENSRNOT00000022724 3 1 1 80 1 277284418 277284438 CAAACCACAGATGACCAACAG 60 277284478 277285220 CTCATCCGTGATGTTGTTGAG 59 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 3 2 2 88 4 170157953 170160918 AAGAAGTCAGGTCTGAGCG 59 170157883 170157901 TGAAGAGGAGTCAGCTCCT 60 NA Rattus norvegicus 81 Olr879 ENSRNOG00000043438 ENSRNOT00000064380 1 1 1 60 7 3706547 3706565 GAACCATCCTCAGATTCCC 57 3706505 3706526 GAAGAACAAGTAGAGAAAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgarp ENSRNOG00000011923 ENSRNOT00000016475 1 1 1 80 2 140447808 140448441 GGTGGATATTACACTTACAAGGC 59 140447750 140447769 TGTTTGTTCTTTCGGGTCAG 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386,ENSRNOT00000067384 3 2 2 80 1 239430088 239430106 TCAACTTTCTGGATTGCCC 58 239430148 239433226 ATACCATATTCCAGCATCCTG 57 NA Rattus norvegicus 81 Ankrd31 ENSRNOG00000025321 ENSRNOT00000032960 3 1 1 80 2 27666379 27666399 GACAATGACAAAGCAGTTGGT 60 27666441 27668645 GATGGTCTGATGCACAGGT 60 NA Rattus norvegicus 81 Sdcbp ENSRNOG00000009683 ENSRNOT00000013563 2 1 1 80 5 19485104 19485122 CTTCTGCTAATCCTGCCAG 58 19485164 19486592 GATAGAGATTTCCACCTGGAG 57 NA Rattus norvegicus 81 Lins ENSRNOG00000042776 ENSRNOT00000018463 1 1 1 82 1 127623687 127623705 CATAGAGCAGGACGATGAC 58 127623751 127624688 AAGTGTCCCATTCTCTGGT 58 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623,ENSRNOT00000078559 1 2 2 80 19 60328618 60330349 CGGCTAATAGAGGTCAATGGA 60 60330389 60330409 CATCTTGGTGCTTCTCAACAG 60 NA Rattus norvegicus 81 Sftpa1 ENSRNOG00000011438 ENSRNOT00000047870 3 1 1 86 16 18717968 18718228 CAAACAATGGGAGTCCTCAG 59 18718277 18718295 AAAGTTGACTGACTGCCCA 60 NA Rattus norvegicus 81 C1rl ENSRNOG00000011718 ENSRNOT00000015678 1 1 1 80 4 157108354 157108373 TGAGACTGATCTTCCAGGAC 59 157108415 157118945 TTCCTCTGGTTGAAATGGTG 58 NA Rattus norvegicus 81 C1rl ENSRNOG00000011718 ENSRNOT00000015678 2 1 1 80 4 157120557 157120671 TAAGGAAGAACAGACAGGGAC 59 157120713 157120731 TCAGGAACCTCTTCTCCAC 58 NA Rattus norvegicus 81 Ppp4r1 ENSRNOG00000013733 ENSRNOT00000066793 2 1 1 80 9 113546170 113546188 GCTAATCCATCAAGCTCGG 59 113546232 113554196 ACCATCGTCTCTGATCCTG 59 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527,ENSRNOT00000017453 1 2 2 80 2 143666751 143667264 GCTTTCATCATTCAGAGCGG 60 143667306 143667325 GCAAAGAGTGTGAAGTGACC 60 NA Rattus norvegicus 81 Timm23b ENSRNOG00000031285 ENSRNOT00000048004 1 1 1 60 6 75244369 75244387 TTCGAGGAATAGCACGTGG 60 75244327 75244345 TACAGTGCAGAGACACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plcd1 ENSRNOG00000032238 ENSRNOT00000045493 2 1 1 80 8 127754501 127754520 CAACACCACCTTCAACTCAC 59 127754353 127754458 CCAGAGATGATCCGGACAC 60 NA Rattus norvegicus 81 Prss58 ENSRNOG00000013132 ENSRNOT00000017611 1 1 1 80 4 69145887 69147441 CTATGTGACGTCACCAAGGA 60 69145826 69145844 GGCATTATGACACTCAGCC 59 NA Rattus norvegicus 81 Myo1a ENSRNOG00000004177 ENSRNOT00000005575 3 1 1 80 7 71018444 71018627 GCATCTGAGTGAGATGTCG 58 71018670 71018689 TTTGTCAGCAGTTCAACCAG 59 NA Rattus norvegicus 81 Entpd8 ENSRNOG00000009239 ENSRNOT00000012289 1 1 1 80 3 2292873 2298831 GGAGACTGGTGGAAGACAG 59 2298875 2298893 ACACGAGGATGTATAGGCC 59 NA Rattus norvegicus 81 Entpd8 ENSRNOG00000009239 ENSRNOT00000012289 3 1 1 81 3 2292873 2298831 GGAGACTGGTGGAAGACAG 59 2298875 2298894 AACACGAGGATGTATAGGCC 59 NA Rattus norvegicus 81 Zyx ENSRNOG00000017354 ENSRNOT00000023537 1 1 1 80 4 71746802 71746944 AGTAAATGAGTCCTGTGGCA 59 71746987 71747005 TGGAACAGTTGTCCCAGTG 60 NA Rattus norvegicus 81 Cic ENSRNOG00000056118 ENSRNOT00000091357 1 1 1 80 1 82159591 82159711 CCTTCTTCCACAAGAATCACC 59 82159753 82159771 CTGACTGCATGCAGAACTG 59 NA Rattus norvegicus 81 Haus3 ENSRNOG00000015255 ENSRNOT00000020576 2 1 1 82 14 81843820 81843838 TAAGGACGTGGACATGCTG 60 81843884 81856529 AGTGCTCCATTAGCTCCTG 59 NA Rattus norvegicus 81 LOC100910721 ENSRNOG00000061282 ENSRNOT00000074845 2 1 1 60 19 9436567 9436586 CACAAGAAGATCCTGGAGAG 57 9436608 9436627 ATTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uggt1 ENSRNOG00000014901 ENSRNOT00000020558 1 1 1 80 9 42735284 42739354 CCGTGTATTTGGGTGAACTG 59 42735223 42735244 TGATTCTTGGAACAACATTCGG 60 NA Rattus norvegicus 81 Stac3 ENSRNOG00000008050 ENSRNOT00000010639 1 1 1 80 7 70810070 70811099 AGTATGCTTGTGTCTCTGCT 59 70811141 70811160 CCTTGTTTGCCATGATCACC 60 NA Rattus norvegicus 81 AABR07049783.1 ENSRNOG00000049373 ENSRNOT00000072631 1 1 1 60 5 137708785 137708803 TACACATGGATTCACGCCT 59 137708824 137708845 AGAATGGATAAGATGCTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl2l15 ENSRNOG00000037149 ENSRNOT00000056068 1 1 1 80 2 206314592 206314983 GAACCATGTTCAGGAGAGGA 59 206315026 206315044 GTTGAACTTGTCACCCAGC 59 NA Rattus norvegicus 81 Shcbp1l ENSRNOG00000002691 ENSRNOT00000003661 3 1 1 80 13 70879540 70881983 ACATGAAGGTTCTTCCAGC 58 70882027 70882045 GAATGCTCACTCCATAGCC 58 NA Rattus norvegicus 81 Mgat2 ENSRNOG00000004234 ENSRNOT00000005608 3 1 1 60 6 91477757 91477775 CAATGCCGAATACCCAGAC 59 91477798 91477817 TTTGGTTTGCGAGAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx20 ENSRNOG00000015274 ENSRNOT00000068152 2 1 1 80 2 208145578 208146157 CTTCTCCCTTTACCAGATCC 57 208145517 208145535 CATCGCAGCTTTAACTTCC 57 NA Rattus norvegicus 81 Timd4 ENSRNOG00000038894 ENSRNOT00000059448 1 1 1 80 10 31889969 31889989 ACCATATCTACAGACACAGCC 59 31890028 31911276 TTCTGAAAGGTAACGGAAAGAC 59 NA Rattus norvegicus 81 Sntg1 ENSRNOG00000007294 ENSRNOT00000009679 1 1 1 80 5 10434586 10434604 TGGAGAGTCACCTAATGGG 58 10434647 10476235 AAAGTACAGCCTTTGTTGCT 58 NA Rattus norvegicus 81 Stk33 ENSRNOG00000014590 ENSRNOT00000019597 3 1 1 80 1 173921849 173921869 AACAGCTCATGAAAGTAGACC 58 173911047 173921808 GAGTATTGCCTGTCAACCAC 59 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750,ENSRNOT00000047843 1 2 2 80 11 31979656 31979676 AGAGCACAAACAAGTCTAGAG 58 31979718 31985991 GCATCTGCTGAGATTCCTG 58 NA Rattus norvegicus 81 Tyk2 ENSRNOG00000032948 ENSRNOT00000041678 2 1 1 80 8 22132114 22132132 CCACCCTCCTTGAGATCTG 59 22131643 22132073 TTGTGTAGAACCGTTCTTTCTC 59 NA Rattus norvegicus 81 Zbtb4 ENSRNOG00000014689 ENSRNOT00000019687 1 1 1 85 10 56383204 56383222 ACTGTGAGAAGGTGTTTGC 58 56383271 56383842 GAAGATGCACTGGTACCTG 58 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799,ENSRNOT00000019555 3 2 2 81 14 81661631 81661650 GGATGAAGGAACTACTGGAC 57 81660582 81661093 CTGCACAATCTCAGAGTATCC 58 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733,ENSRNOT00000085987 2 2 2 80 20 44581246 44588536 ATATTGAACAGCTCGGAAGG 58 44588576 44588597 GTAGTTGCTAGGAATGTAACCA 58 NA Rattus norvegicus 81 RGD1564405 ENSRNOG00000008382 ENSRNOT00000011083 2 1 1 82 5 3676085 3676460 AAAGAACCTCAGAACCTCAG 57 3676505 3676523 GTGTCTACAACTTGCTGGT 58 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 1 2 2 80 10 56289070 56289088 CAGTACTCACCCAGAAGCA 59 56288723 56288891 TGTCAGAGTCCTTGGAGGT 60 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000068195 3 1 2 89 7 117953564 117954779 GATTTGCCAGACAGACTCC 58 117954832 117954850 CCAAAGTCAGGAATCTGCC 59 NA Rattus norvegicus 81 Rrp8 ENSRNOG00000018766 ENSRNOT00000025651 3 1 1 81 1 170576718 170576948 CCAAACAGTTCACAATTCTAGG 58 170576658 170576676 GGAGTTAGGTGATGCAGAC 58 NA Rattus norvegicus 81 Pla2g1b ENSRNOG00000001153 ENSRNOT00000001525 1 1 1 83 12 46882289 46883191 GACGACTTAGACAGGTGCT 59 46882224 46882244 GTCGATGAGGAATTTACAGCT 58 NA Rattus norvegicus 81 LOC100909700 ENSRNOG00000048783 ENSRNOT00000071704 3 1 1 80 1 81624557 81625756 TGGTCTTCAGTTAGGTCCG 59 81624495 81624514 AGGTGCAGATCAGATACGTC 59 NA Rattus norvegicus 81 Cript ENSRNOG00000015215 ENSRNOT00000020534 2 1 1 88 6 10597653 10600314 AGAAAGCAAGGTTTGATCCA 58 10600365 10600383 GTAATGAGAACCTGGCTGG 58 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 1 2 2 80 11 32690006 32697744 TCACATCATTAAGATTGTGGCC 59 32697784 32697803 TTCAAGTACCTCCAAATGCC 58 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479,ENSRNOT00000051402 2 2 2 81 1 129775238 129775258 CAGACCAGAGTGTAAGAAGAG 58 129773125 129775198 TTCAGCATAGGAGTCAATAAGG 58 NA Rattus norvegicus 81 Tmem213 ENSRNOG00000013616 ENSRNOT00000018331 3 1 1 107 4 65801624 65801642 CTCCTTCTACTTGTGCTGC 58 65806283 65807208 CAGAAGTCGACGTTAGCAC 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928,ENSRNOT00000084470 3 2 2 80 9 40986735 40986756 AATTTCAGCCTCTTTGAAGTGG 60 40986796 40986908 GAACCTGTACTGCTCCTCTG 60 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076782 1 1 2 60 1 134999301 134999319 AACTGTAGCAAAGATGCCA 57 134999340 134999361 GAACTTCCTTCCATTTATGTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gys2 ENSRNOG00000059753 ENSRNOT00000090122 1 1 1 80 4 176644963 176644982 CGCCAAAGAATCATCCAGAG 59 176642982 176644921 CTGGTAATATCTGCCCAGGT 59 NA Rattus norvegicus 81 Alox15b ENSRNOG00000007778 ENSRNOT00000010415 2 1 1 80 10 55775324 55775498 TGCAATAAGGAGCTTCGTC 58 55775262 55775280 TGGAGCTCTTGGTCATCTC 59 NA Rattus norvegicus 81 Minpp1 ENSRNOG00000011287 ENSRNOT00000015017 2 1 1 80 1 251052331 251052349 TTGACCTGGCAATTCAAGG 58 251052390 251056669 TTAAGTATTCCAGAACCTTCGC 59 NA Rattus norvegicus 81 LOC100911774 ENSRNOG00000045655 ENSRNOT00000070921 3 1 1 80 1 88686029 88686048 TACAGCAAGTTGGATCAGGA 59 88683095 88685988 GTGGTCAATGACATGGATTCG 60 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025633,ENSRNOT00000025600 1 2 2 80 2 205854041 205854060 AACGTCTTCTGCTTTACCTC 58 205854100 205856557 AGTAGTTTGGTATCGAAACAGG 58 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058068,ENSRNOT00000058067 3 3 3 80 14 81858807 81858828 AGAAGATTATGTCTGCTATGCG 59 81858867 81875495 TCACTTCTGAAGTCTTTGTCC 58 NA Rattus norvegicus 81 RGD1562084 ENSRNOG00000015201 ENSRNOT00000020410 1 1 1 80 8 59975341 59975359 ATTCCAGTTTGCTGCTGTC 59 59975400 59988953 ACGATCCGTAGAATAGTCTCTG 59 NA Rattus norvegicus 81 LOC688462 ENSRNOG00000029317 ENSRNOT00000051194 3 1 1 60 19 34617024 34617045 GTGCTAAGGAAAGGAAGAAGTC 59 34617064 34617084 TTTGTCCTCTTATGCTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000089629,ENSRNOT00000014230,ENSRNOT00000083233 1 5 10 88 10 87121348 87122049 TTTAATGGTTCATCAGCGGA 58 87121279 87121298 TGCTTTCCAGGAATTTCCTC 58 NA Rattus norvegicus 81 Srsf6 ENSRNOG00000006380 ENSRNOT00000008427 2 1 1 80 3 159307613 159307784 AAGTAGATCCAGATCACGGT 58 159307824 159307845 GAGATACTTCGAGATCTACTGC 58 NA Rattus norvegicus 81 Nsmce4a ENSRNOG00000020452 ENSRNOT00000027721 1 1 1 80 1 201106630 201106648 GAAAGCCAAACAGCTTCGT 59 201103997 201106589 ACACCCATATGTGTCAGTAGAG 59 NA Rattus norvegicus 81 AABR07051551.1 ENSRNOG00000058460 ENSRNOT00000074266 2 1 1 114 3 16846460 16846478 CAGACTCCTGCTATGGGTG 60 16846799 16846817 ACAGGAGATGGTAACCCTC 58 NA DesignNoJunction Rattus norvegicus 81 S100z ENSRNOG00000017998 ENSRNOT00000024202 3 1 1 82 2 25188937 25190372 CTCACAGAATTCCTCACATGTC 59 25188876 25188894 TCGTTGTCCTTGTTAGCGT 60 NA Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856,ENSRNOT00000066943 3 2 2 96 1 216819393 216819411 TCTTCAAGGTAAGCAGCAC 58 216818431 216819333 TTAATGAGGTGAGTGCCAG 57 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 1 2 2 90 10 56826114 56826218 TCTGTCAGGCTTCCTAAGG 58 56826272 56826290 GTAGATGAAGCTGCCAGAG 58 NA Rattus norvegicus 81 Cldn14 ENSRNOG00000001691 ENSRNOT00000002297 3 1 1 134 11 34133592 34142367 GAGCTGTTCTGTATGCCTC 58 34133476 34133494 CTAAGCAGGAAGCCTAGGA 58 NA InUTR Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 1 2 2 80 2 257656065 257656085 GGAGACTCCCTTTCATATTCC 58 257656126 257656623 ACCTCTGATCATCTGAGGAC 58 NA Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 2 2 2 80 2 257660764 257660787 GTGTACATGGATGAAGATGATGAG 60 257660826 257664992 TTCTTCATCTGAGGCCTCC 59 NA Rattus norvegicus 81 Fpgs ENSRNOG00000050780 ENSRNOT00000070916 2 1 1 80 3 11723168 11723269 CCAACATCATCAGAAAGCCAG 60 11723108 11723128 CCACTGTATCTCCTAGCAGAC 60 NA Rattus norvegicus 81 Tmem232 ENSRNOG00000031348 ENSRNOT00000034759 3 1 1 80 9 113161683 113161701 GATGCCCGAATTAGATGGA 57 113132634 113161639 ACCTTCGCACAGTTATCAG 58 NA Rattus norvegicus 81 Psmg1 ENSRNOG00000001643 ENSRNOT00000002242 2 1 1 80 11 36331853 36331872 TCAAAGATACCGTCTACTGC 57 36330392 36331810 GACAGTAGCTCAGAACTGC 58 NA Rattus norvegicus 81 Dzank1 ENSRNOG00000007440 ENSRNOT00000029701 1 1 1 80 3 138680360 138682665 GGAAATGAAATCCGACACCC 59 138680299 138680321 CCAACTTTCTTTAGGAAGTCAGG 59 NA Rattus norvegicus 81 Spcs3 ENSRNOG00000038933 ENSRNOT00000067375 1 1 1 87 16 40054501 40054520 GGTGATAATCCAAAGCTGCT 58 40054569 40055957 CATTCCTGTTTCCCTTGAGG 59 NA Rattus norvegicus 81 Apoa1 ENSRNOG00000045679 ENSRNOT00000074357 2 1 1 85 8 50525606 50525624 TGGATGCAGTCAAGGACAG 60 50525672 50526240 CAGGAGATTCAGGTTCAGCT 60 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 3 2 2 80 1 205911925 205911943 CAGTGGCTTAGGTTCTCCA 59 205911987 205922924 CTTTGTTGCGTAGCCTGTG 60 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681,ENSRNOT00000086340 1 2 2 94 9 113313399 113313417 CAAAGTGAAGACCACAGCG 60 113312654 113313342 GCAGCATTACTGAGACAGTC 59 NA Rattus norvegicus 81 Emilin2 ENSRNOG00000014837 ENSRNOT00000056272 3 1 1 80 9 119615397 119615416 AGCAATTCTACAGTCACGTC 58 119598329 119615354 GTTCCTCTGTTGCTGATGG 59 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006,ENSRNOT00000090755 1 2 2 87 1 263917746 263917764 TCACGAGCTTGAAGTACCT 58 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 Cnnm3 ENSRNOG00000016032 ENSRNOT00000021592 3 1 1 80 9 43102867 43103235 CTCATTAAGGTCACACGGC 59 43103279 43103297 GTTCTCTGGAGATGGAGGT 58 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894,ENSRNOT00000036646 2 2 2 80 14 64725389 64728666 TCACTGAAGAGATTGGACCT 58 64728709 64728727 AACCAGATTGGTGAGTCCT 58 NA Rattus norvegicus 81 Xirp2 ENSRNOG00000034258 ENSRNOT00000048300 3 1 1 84 3 53642581 53642599 TATGAAACCTCGGATGCAC 58 53642646 53644896 TTGGACCAACAGTTTCACTC 58 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 1 2 3 80 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228638 47228660 TCATATTCTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Slc6a8 ENSRNOG00000057620 ENSRNOT00000092123 1 1 1 80 X 157132211 157132316 CTTGGGTTTATGGAGCTGAC 59 157132150 157132168 ACCATTTCATCCAAGGGCA 60 NA Rattus norvegicus 81 AABR07043748.1 ENSRNOG00000046621 ENSRNOT00000072666 1 1 1 60 19 38342601 38342622 GATGCTGATTATTGACACTCCT 58 38342562 38342581 GCTTCCTCTGTTTCTCAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha8 ENSRNOG00000013036 ENSRNOT00000017559 3 1 1 82 5 155298942 155299351 CATCTGCAAGAAGAGGCAC 59 155298878 155298897 CTTGGCCATTCTGGTAATGC 60 NA Rattus norvegicus 81 Oasl ENSRNOG00000001187 ENSRNOT00000001570 2 1 1 80 12 47445993 47446793 CTCAAAGGAGAAAGGCCCA 60 47445931 47445951 AACTATATCCCACCTGTAGCC 59 NA Rattus norvegicus 81 Tgif1 ENSRNOG00000015906 ENSRNOT00000021534 3 1 1 81 9 119182127 119183012 TGTCCACACTACAGGTCTG 59 119182064 119182083 TCTTTGCCATCCTTTCTCAG 58 NA Rattus norvegicus 81 Klf8 ENSRNOG00000039057 ENSRNOT00000041039 3 1 1 80 X 18858823 18859477 ATTTCATCATGAACCAGCGAC 59 18858763 18858783 CACTGATGAATCCGTCTTCTC 59 NA Rattus norvegicus 81 Mgat4a ENSRNOG00000018276 ENSRNOT00000024701 1 1 1 80 9 44056713 44057580 GAAAGAGTAAGATGGAGAACGA 58 44056654 44056674 GTAGTAAATGCCCTTCTCCTG 58 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837,ENSRNOT00000080699 2 2 2 96 2 104952163 104952433 GATGCAGATACTCTGGTTCTC 58 104952087 104952105 AATTGAAACAGTCAGGCCA 58 NA Rattus norvegicus 81 Sdc3 ENSRNOG00000011927 ENSRNOT00000048781 2 1 1 190 5 148951969 148951987 ACACAGCCAATGAAGTGGT 60 148952141 148952782 TACGATCACAGCTACGAGC 59 NA Rattus norvegicus 81 Barhl2 ENSRNOG00000002117 ENSRNOT00000002887 1 1 1 83 14 4363392 4364990 AAATGCCACGGAACAAAGG 59 4365037 4365055 TCGAGGTTTCTTGGCTCTC 59 NA Rattus norvegicus 81 RGD1564617 ENSRNOG00000050463 ENSRNOT00000072809 3 1 1 60 9 52393806 52393825 ACATTCTGCAAGAAATGTGG 57 52393848 52393866 TGCCATTCTTGTATTGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf4 ENSRNOG00000016299 ENSRNOT00000022255 3 1 1 90 5 72285505 72285523 CACTTGTGACTATGCAGGC 59 72284316 72285451 GTAAGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 LOC100909568 ENSRNOG00000046372 ENSRNOT00000075032 2 1 1 60 7 8210404 8210425 ATTCCCAGATTTCTACACAGCA 60 8210444 8210464 CACAAGCAGTATAGGCAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a4 ENSRNOG00000031782 ENSRNOT00000047563 3 1 1 80 8 114729600 114731815 GGACCTAAGGGAGCAAGAG 59 114728318 114728337 CTGTTCTCCATCTAAGCCCT 59 NA Rattus norvegicus 81 Ntm ENSRNOG00000023720 ENSRNOT00000035454 2 1 1 80 8 30154105 30221150 CCTCATTGTACAAGTATCTCCCA 60 30154047 30154065 GTGAGGCTGATGTTGTTCC 59 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 1 2 2 80 11 38075287 38077323 AGACATGGGATACAAGAACAG 58 38075227 38075246 TTCAGCTTCATAAAGCTCGT 58 NA Rattus norvegicus 81 Ntan1 ENSRNOG00000051382 ENSRNOT00000077695 3 1 1 80 10 3232200 3232219 AGAGCTTCCTTTCAAGATCG 58 3232261 3234473 AATGCTAATCATTGGGCCTC 58 NA Rattus norvegicus 81 Slc43a1 ENSRNOG00000008243 ENSRNOT00000011006 3 1 1 80 3 72249615 72249633 TGTCCTTGAATGGGTTTGC 59 72251846 72251944 AGGACCTTAGATGCTTAAACAG 58 NA Rattus norvegicus 81 Gldn ENSRNOG00000024082 ENSRNOT00000033900 3 1 1 80 8 58908448 58908469 TACCCAATGATGATACCTTGGT 59 58908508 58909084 TGATCATGGGTTCTGTTTGTG 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888,ENSRNOT00000091626 1 2 2 81 19 19265341 19266947 TGATCGAGATGGTGGTCAG 59 19265278 19265299 AGACATCTTCAAGTACTCTCCT 58 NA Rattus norvegicus 81 Serpinb10 ENSRNOG00000002417 ENSRNOT00000003314 1 1 1 156 13 27469110 27469128 CATCAACCAGTTCGCTGTG 60 27469246 27471410 ATGAAGTACCTGGGACATCTG 59 NA Rattus norvegicus 81 Serpinb10 ENSRNOG00000002417 ENSRNOT00000003314 3 1 1 160 13 27469106 27469125 TATCCATCAACCAGTTCGCT 59 27469246 27471410 ATGAAGTACCTGGGACATCTG 59 NA Rattus norvegicus 81 Krt14 ENSRNOG00000003899 ENSRNOT00000083895 1 1 1 80 10 88120494 88120512 GACAATGCCAATGTCCTCC 59 88119995 88120451 CTGCTCTGTCTCAAACTTGG 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419,ENSRNOT00000088589,ENSRNOT00000090323 2 3 3 80 3 43352273 43352292 GGGCTATAAGTCTCGAACAG 58 43352334 43352446 TTCTTGTACCGATCGATGTC 58 NA Rattus norvegicus 81 Hnrnpr ENSRNOG00000011910 ENSRNOT00000015971 3 1 1 80 5 154676710 154676728 CAGAGGAAGTATGGTGGGC 60 154676770 154685234 ACCTACAAAGACCTCTGTTCC 60 NA Rattus norvegicus 81 Emc10 ENSRNOG00000019532 ENSRNOT00000026445 2 1 1 145 1 100497142 100497161 ATACATCTGTTCATCTGCGG 58 100495971 100496943 GATGTACATCCAGTATTTGGCA 59 NA Rattus norvegicus 81 Lypd6b ENSRNOG00000004614 ENSRNOT00000065989 2 1 1 103 3 35429247 35429268 CATTCCCAAACAGTTTCAAGTG 59 35429332 35434180 ATACTGTGTTTCCTGCGGA 59 NA Rattus norvegicus 81 Ka11 ENSRNOG00000061636 ENSRNOT00000084619 1 1 1 80 10 88142048 88142066 TGGATAGCGAGAATGTCCA 58 88141750 88141910 ATGAGGAGAAGACTTCTCCAG 59 NA Rattus norvegicus 81 Psma4 ENSRNOG00000013493 ENSRNOT00000018173 3 1 1 80 8 59534582 59536450 AAACTTAACGAGGACATGGC 59 59536490 59536511 AATGAGCCTGAGTTCATTAGTC 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161,ENSRNOT00000077908,ENSRNOT00000090143 1 4 4 80 1 201323332 201323350 GTGGAGAAGTCTCTGGCTG 60 201323392 201323611 CTCCTCATTCTTTCGAAAGCC 59 NA Rattus norvegicus 81 Dusp27 ENSRNOG00000003722 ENSRNOT00000004965 3 1 1 80 13 84306055 84312197 CTATAGAGGGAAAGTCCTGGT 58 84305995 84306013 AAGATCATCAGGTAGGCGA 58 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 2 3 3 80 2 147957337 147957356 ATGGACATCCGGACAAAGAG 60 147955480 147957295 AAAGACCAAGACTCTCCCAG 59 NA Rattus norvegicus 81 Serpinb7 ENSRNOG00000002555 ENSRNOT00000003466 2 1 1 80 13 27345797 27345818 TTGAGCTACAATATCATGGTGG 58 27345858 27353669 TCAGCTTGCTTTCAATTTCG 58 NA Rattus norvegicus 81 Elmod2 ENSRNOG00000028176 ENSRNOT00000031614 2 1 1 80 19 24478695 24484274 ATTCCAAGAGTAAGGTCCTACAG 59 24478637 24478657 CCTTCATGATGTCCACTATGC 59 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000050760 ENSRNOT00000073192 2 1 1 80 5 64582907 64582925 ACGTGCTGACATCTATGCA 60 64582969 64584194 TAGTCTTCGTGGATTCCGC 60 NA Rattus norvegicus 81 Ptcd2 ENSRNOG00000028403 ENSRNOT00000034992 1 1 1 80 2 29583211 29583230 AAGCCCTAATGAAGGGAGAC 59 29579837 29583170 CCAACTGGTTCTGATTCAGAG 59 NA Rattus norvegicus 81 AABR07055875.1 ENSRNOG00000050603 ENSRNOT00000044642 2 1 1 90 7 14643939 14643960 TGGTTAGAATAGTTGTGGAACC 58 14644011 14644223 TGTGGCCATTCATTCACAG 59 NA Rattus norvegicus 81 Usf2 ENSRNOG00000053725 ENSRNOT00000087381 3 1 1 90 1 89372886 89380511 TCAGCACAATGAAGTGGAG 58 89372814 89372832 GTCTGCATGACAATCTGGA 58 NA Rattus norvegicus 81 Mettl18 ENSRNOG00000025189 ENSRNOT00000003636 1 1 1 80 13 82298643 82298662 GGGACTTTGAGACTACTCGT 59 82298704 82299346 CAATTTAGCCCTCACAGTGG 59 NA InUTR Rattus norvegicus 81 Il1rl2 ENSRNOG00000014683 ENSRNOT00000019880 2 1 1 80 9 47077989 47078007 CGAGTTAACAACACCCTGG 59 47078050 47078900 CAGAGACAGATTGGTTTCGA 58 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922,ENSRNOT00000017900 1 2 2 80 8 59490942 59491295 AGAGCCATTAGGTACTGACTC 59 59491334 59491355 ATCTGATGAACTTCTTCTCGAC 58 NA Rattus norvegicus 81 Atp2a1 ENSRNOG00000047124 ENSRNOT00000074778 1 1 1 82 1 197857568 197857673 CAGCTACCATCAACTGACTC 58 197857505 197857523 CTTCAAAGACCTCGCAGTC 59 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 3 2 2 81 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548466 CAAACTTCTGGTACAGCAGC 60 NA Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000004347 1 1 2 82 13 89544802 89565624 ATGAGCGAGCTTAACACCA 59 89543633 89543651 TTAATGCTGCCAGGTTTCC 58 NA InUTR Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244,ENSRNOT00000012417 3 2 2 80 2 166411776 166415880 AAGGAGATTCATGATGGTCTG 58 166415921 166415940 TGTACCCTGAAGAAACTCCA 58 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 1 2 2 80 8 36211820 36227054 ACCATAGACATCCAGCATCC 59 36227095 36227115 GAACGTGACGATATTGTCCTC 59 NA Rattus norvegicus 81 Baat ENSRNOG00000007395 ENSRNOT00000009777 2 1 1 80 5 64769234 64771243 CCTGAGACATCCTAAGGTCC 59 64769173 64769194 GCCATAGAAAGTCCAATCTCTG 59 NA Rattus norvegicus 81 Eif5a ENSRNOG00000016478 ENSRNOT00000022343 3 1 1 106 10 56528078 56528266 GATTTCCAGCTGATTGGCA 59 56527990 56528008 ATCTCCTTGCCAAGGTCTC 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876,ENSRNOT00000057473 1 2 2 80 2 172317730 172317749 TCCTCATTCGAGATGAGCTG 59 172312929 172317688 GACTCTCAGCGTGTCTAGTC 60 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000041394,ENSRNOT00000078001 1 2 2 80 3 43113697 43114553 CTATTCCAGGTTCCAGGCA 59 43113635 43113654 AGGAGATCGTAGAACTGCTG 59 NA Rattus norvegicus 81 RGD1559864 ENSRNOG00000000129 ENSRNOT00000000141 1 1 1 81 5 58382445 58382784 CAGGAGTCCAGATTTGTGGA 60 58382828 58382846 CTCCACTGTTAGGACGAGC 60 NA Rattus norvegicus 81 RGD1559864 ENSRNOG00000000129 ENSRNOT00000000141 2 1 1 82 5 58381015 58381033 CTGCTGCTTACTGAGGAGG 60 58381079 58381384 AGTGTCAGGGAGCAATCAG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 3 2 2 88 3 79731783 79733263 GGACTAGCTTAAAGGAAATTGGG 60 79733311 79733329 CAAGGACACAGCCAATGAG 59 NA Rattus norvegicus 81 Iqgap2 ENSRNOG00000025406 ENSRNOT00000035017 1 1 1 80 2 26269808 26269826 GCTGTCTATCCCTTTGCTG 58 26265643 26269764 GGCCAAGTAGTTCGATGTG 59 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 1 2 2 80 20 4539757 4539776 AGAGTGTCTGAGGAGAGGAG 60 4539326 4539717 CAGCTTGTGGTCTTCATAACTG 60 NA Rattus norvegicus 81 Cgnl1 ENSRNOG00000054080 ENSRNOT00000083220 3 1 1 80 8 78130665 78130683 GGAGGAGCAGATAGGAGTG 59 78129571 78130624 GACAGTGTCTTAAGCCTTAAGC 59 NA Rattus norvegicus 81 Olr81 ENSRNOG00000048540 ENSRNOT00000043806 3 1 1 60 1 168294582 168294602 TCTATTTGGTCATTCCTCCCT 58 168294623 168294642 ATCTGCTTTGTTCTCACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910402 ENSRNOG00000053897 ENSRNOT00000079287 3 1 1 60 2 35210411 35210431 ACCCATGTACTTCTTCCTCAG 59 35210371 35210391 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc1 ENSRNOG00000009503 ENSRNOT00000012667 1 1 1 80 2 264722303 264722324 TTTCTAGATCTCCCTGAACCTC 59 264722364 264723930 GATGTAGCCACAAACAACCA 59 NA Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 2 2 2 81 10 89403465 89403486 GGAGGAAAGTGGATAGTTAGCT 59 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Coa3 ENSRNOG00000020487 ENSRNOT00000027782 2 1 1 81 10 89199229 89199515 CCCTGGTGTTAGCTATTTATGG 59 89199169 89199187 TTGGCTTCATCTTCCAGCT 59 NA Rattus norvegicus 81 Nudc ENSRNOG00000051720 ENSRNOT00000079380 2 1 1 80 5 151763219 151763237 ACACCTTCTTCAGCTTCCT 59 151758090 151763175 GTGTGATGAGCTTCTCTGC 59 NA Rattus norvegicus 81 Cry2 ENSRNOG00000007478 ENSRNOT00000010142 3 1 1 80 3 81322494 81322513 CTAGTCGGCTCAACATTGAG 59 81322179 81322451 CAGATGCCAACAGACAGAG 58 NA Rattus norvegicus 81 Smc1a ENSRNOG00000003139 ENSRNOT00000004364 1 1 1 80 X 21740064 21740899 TGATATTAGTCAGGAAGAAGGTGG 60 21740933 21740956 CGTGCATAGATACTAGATGTTCTC 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305,ENSRNOT00000037662 3 2 2 80 8 118412870 118412891 TGTAAAGTGGAGTCCATATTCC 58 118412928 118414561 CCTGGATATGTCTACATTCTGAG 58 NA Rattus norvegicus 81 Asf1b ENSRNOG00000005115 ENSRNOT00000006964 1 1 1 80 19 25090565 25090584 AACAATGAGTACCCAGACCC 60 25090625 25091489 CAAGATGTTCCGCTGTAACTG 60 NA Rattus norvegicus 81 Gpsm2 ENSRNOG00000012149 ENSRNOT00000066178 2 1 1 80 2 211506365 211509696 TCCGAATACTACAGGAAGACAC 59 211506306 211506325 AAGACTGTAGCAGGACTGAG 59 NA Rattus norvegicus 81 Nipa2 ENSRNOG00000012690 ENSRNOT00000018028 1 1 1 91 1 114359643 114361093 ATGAGAGCAGGTCAAGGAG 59 114354311 114354329 AAATTGGCCACTTCACCAG 59 NA Rattus norvegicus 81 LOC102547078 ENSRNOG00000047740 ENSRNOT00000057007 1 1 1 81 3 81884041 81886453 CACCAGCTATGATGAAGATGAG 59 81883981 81883999 TTCCTCTGGAGAACGTAGC 59 NA Rattus norvegicus 81 Idh3a ENSRNOG00000010277 ENSRNOT00000015102 2 1 1 80 8 59176240 59176258 AGTTTGCCTTTGAGTACGC 59 59176300 59177856 CTGACATCCTCATGATGTTGG 59 NA Rattus norvegicus 81 LOC100912928 ENSRNOG00000048573 ENSRNOT00000045710 2 1 1 60 X 17540770 17540788 GAGGATTGGGAAGACTCGG 60 17540809 17540830 CATCTTCGATCTTGAACCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 1 2 2 80 8 128661864 128662075 AAATGCCAGATGGATCACAC 59 128661803 128661821 GAATTCCACTCGACCATGG 58 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 2 2 2 80 10 59753210 59753321 TACATCCAGGAGGAGTTTCTC 59 59753150 59753168 ATGTAAGCTGAAGAAGGCG 58 NA Rattus norvegicus 81 Fbxo21 ENSRNOG00000001129 ENSRNOT00000064900 2 1 1 80 12 44265810 44265828 ACCAGCTCAAGTTCAAAGG 58 44264422 44265766 TTCTGCGAGTCAATACCTG 57 NA Rattus norvegicus 81 Tcn2 ENSRNOG00000004280 ENSRNOT00000005934 3 1 1 80 14 84179586 84179604 AACAGTTTCCGTCTTTGCT 58 84176495 84179543 GTCCCATACGTGAATTCTCC 58 NA Rattus norvegicus 81 Fat4 ENSRNOG00000028335 ENSRNOT00000038703 1 1 1 80 2 125835689 125842888 GTCATCAGTTACAGTATCATCGG 59 125842926 125842946 CAGTGCACTAGTGATGATCTG 59 NA Rattus norvegicus 81 Cstf2t ENSRNOG00000050289 ENSRNOT00000074100 1 1 1 60 1 249576047 249576065 GAGATGCTCCAAATGACCC 58 249576088 249576107 GGCTCTACTTCTCCAGTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnasek ENSRNOG00000018881 ENSRNOT00000025767 3 1 1 106 10 56849247 56849924 ATCATGTTGATAATGCTCGGG 59 56848689 56848707 TATATGTTCTGAGGGCCGT 58 NA Rattus norvegicus 81 Higd1a ENSRNOG00000019428 ENSRNOT00000064114 3 1 1 86 8 130484254 130484277 CGAAGATGTCTATTCACTTGATCC 60 130483582 130484211 TGGAATAGCCCATACCAAGAG 59 NA Rattus norvegicus 81 Hscb ENSRNOG00000037508 ENSRNOT00000056798 3 1 1 80 12 51881728 51882768 AGAGGACTATATCTTCTAAAGCTCC 59 51882805 51882824 CACAAGGAACTGACTGTCTG 59 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 3 1 1 69 2 36011090 36011108 ATGCTTCATTCGATGCTCC 58 36011785 36012943 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 3 4 5 80 8 99638165 99638184 CTGGGCTGGAATACTTAACG 59 99639415 99640580 CAAAGCCTGTTAAGACTTCCA 59 NA Rattus norvegicus 81 Ndufv1 ENSRNOG00000018117 ENSRNOT00000024517 3 1 1 81 1 219255267 219255372 GAGAAACATGCTGGTGGTG 59 219255204 219255223 GGATCAGTGGAGTGGATGAG 60 NA Rattus norvegicus 81 Grb14 ENSRNOG00000052498 ENSRNOT00000089243 1 1 1 80 3 50948245 50948269 GTACCAGAATTATATGCATCCATCC 60 50941615 50948208 TCTGATACGCTTCTCATGGG 59 NA Rattus norvegicus 81 Rplp2 ENSRNOG00000002116 ENSRNOT00000038691 1 1 1 122 1 213991629 213991647 GTTGCCTCTTATCTGCTGG 58 213991732 213992428 ACTGATGACCTTGTTGAGTC 58 NA Rattus norvegicus 81 Scg3 ENSRNOG00000010784 ENSRNOT00000014491 2 1 1 80 8 82634191 82634212 CAGGATTTATGAGGAGAACGAC 59 82632991 82634151 CTTTCAGTGATTAGGCCGAG 59 NA Rattus norvegicus 81 Scg3 ENSRNOG00000010784 ENSRNOT00000014491 3 1 1 80 8 82582900 82607261 AGGGCAACAAAGAAGATTACG 59 82582840 82582859 TGCCTTTCTCCACATAAGCA 60 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 1 2 2 80 10 91968492 91968510 AAGTAGGACTGGTCGTTGG 59 91966121 91968451 TAGCCTTGCCAATAAGATTGAG 59 NA Rattus norvegicus 81 Mapk10 ENSRNOG00000002079 ENSRNOT00000065965 2 1 1 80 14 8242744 8288114 GGAATAGTTTGTGCTGCGT 59 8288158 8288176 TTGGTTCTGGAAGGGTCTG 59 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000078309 3 1 3 91 20 5227643 5227838 CACTCCTCCAGCTACACTC 59 5227306 5227325 GTCTGGATCTCCTTCTCAGC 60 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 1 2 2 80 3 157009812 157013429 GAAGTTAAGCCTGTGGAACG 59 157009751 157009773 CCGGTTACTGTTCTTATACTCAC 59 NA Rattus norvegicus 81 Lhx5 ENSRNOG00000001392 ENSRNOT00000001883 1 1 1 83 12 41668767 41668785 CGACGAGAACAAGTTTGTG 57 41668096 41668721 CAGGATGACACTGAGTTGAG 58 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 2 3 3 83 8 87270535 87270553 GTGCTAGCAAAGTGACCAG 59 87268998 87270489 CTTGTCCTGACACTGATTGG 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000081437,ENSRNOT00000015365,ENSRNOT00000087874 3 3 3 84 8 87270532 87270550 CTAGCAAAGTGACCAGCAC 59 87268994 87270484 CCATCTTGTCCTGACACTG 58 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 2 3 3 86 5 154393586 154393604 GAGTGGAGACAGACTGACC 59 154392572 154393537 ACGGTGTATCTAGCTTTGGA 59 NA Rattus norvegicus 81 Aen ENSRNOG00000018421 ENSRNOT00000064438 3 1 1 93 1 140588069 140588087 TTGTGGACTATCGAACCCG 60 140588142 140591086 AGCTTAAGGATCTCCTTCTGG 59 NA Rattus norvegicus 81 Olr886 ENSRNOG00000029097 ENSRNOT00000051699 2 1 1 60 7 5818176 5818196 GCAGCACTGATCATCATTCTC 60 5818136 5818155 ATTCACAGAATTCCAGGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551265 ENSRNOG00000030551 ENSRNOT00000042834 2 1 1 85 8 99777427 99777448 TCAGGTCATGAAGTCATAACTC 58 99777494 99779210 TGGACTTCCATCTTCTGGA 58 NA Rattus norvegicus 81 LOC498300 ENSRNOG00000050163 ENSRNOT00000072695 3 1 1 94 13 99369393 99369416 GGCGTGTTCTGTATTTCCT 58 99369474 99369492 TCAAGATCACGAGGAACAC 57 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142,ENSRNOT00000083329 2 2 2 80 8 128795227 128795246 TCTGTGTTCTTGAAGGTGGT 59 128795287 128797936 GACACATCTCACAATGGAAGG 59 NA Rattus norvegicus 81 Tmem106a ENSRNOG00000023628 ENSRNOT00000035523 2 1 1 80 10 89491514 89491890 AATATCCAGGGTGCTCTGAC 59 89491932 89491951 GCAGTCCACATATTCGAAGC 60 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 1 2 2 80 20 50447315 50448805 CCTAAAGGGAAGAATGAAGGT 57 50448844 50448865 TCAGGAGAATCTATAAAGGCAC 58 NA Rattus norvegicus 81 Col5a2 ENSRNOG00000003736 ENSRNOT00000005073 3 1 1 80 9 52115544 52117182 GTGATCAAGGTGTTCCTGGA 60 52115184 52115204 CTCTTTCTCCAGGATTCCCTC 60 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 1 1 1 130 14 3061548 3061566 GAGTCTCAGCTTACCGAGG 59 3061660 3063013 GACGCTGGAGATACAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Col11a1 ENSRNOG00000023148 ENSRNOT00000068413 3 1 1 80 2 216924087 216930657 CACATAGATGAGTATGCACCTG 59 216930694 216930716 ACTCTCAGCCTCTTTATAGTCTG 59 NA Rattus norvegicus 81 Otol1 ENSRNOG00000021186 ENSRNOT00000035765 2 1 1 94 2 166857162 166862204 GGACAACAAGGTCCTAAAGGA 60 166862260 166862278 TCTCCTTTCTGGCCTTTGG 60 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 1 2 2 80 8 119508821 119508840 TGATGTCAGAACACTACCCA 58 119507091 119508780 ATCAGTTCTCGACTAACAGCA 59 NA Rattus norvegicus 81 Olr141 ENSRNOG00000016946 ENSRNOT00000022733 2 1 1 60 1 169213774 169213792 CTATCTGTTTGTGCCACCA 58 169213732 169213751 GATTGGACGGGTCTTAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pramel6 ENSRNOG00000021920 ENSRNOT00000035844 1 1 1 80 3 75561003 75561022 TGGAGACTTTGAAAGCACTG 59 75561064 75561518 GAACTCTGAGTTTGCACCTG 59 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000055683 1 1 2 80 10 76159832 76160372 CACATAGAAGGCTCTCAGCA 60 76159771 76159789 ATTGGTGAGGTTCAGCTCC 60 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 1 2 2 80 1 71434849 71434867 AAGAAGCTTGGTCTCCAGG 59 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Armcx1 ENSRNOG00000037709 ENSRNOT00000029833 3 1 1 60 X 105538787 105538808 GCTTTCCTATTCTTTCCCAGAC 59 105538827 105538847 CTTGGTGAAGTGATTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563947 ENSRNOG00000003688 ENSRNOT00000004893 1 1 1 60 X 25738030 25738051 TACCGCACAATATCACATACAG 59 25738070 25738090 GGTAGGTAATTGGAAGCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 3 2 3 119 2 210782722 210782740 ATGACACTGGGTTACTGGG 59 210782033 210782371 GTCATAGTCGGGAGCATCC 60 NA Rattus norvegicus 81 Myo18b ENSRNOG00000048430 ENSRNOT00000070961 3 1 1 80 12 49840295 49840315 GACAGAAACTGCAGAACTCAG 59 49840356 49847285 AGTCTGCGATCTTACTCTCC 59 NA Rattus norvegicus 81 Lrp1 ENSRNOG00000025053 ENSRNOT00000031005 3 1 1 80 7 70888025 70889564 TGTGACAACGACAATGACTG 59 70887964 70887982 GCACTTGAACTGGGTACTG 59 NA Rattus norvegicus 81 Scpep1 ENSRNOG00000002358 ENSRNOT00000003219 2 1 1 80 10 76253181 76253887 AAAGAATTCCAGACGGTTCC 58 76253120 76253140 AAGTTCTAAACTGATGCCAGC 59 NA Rattus norvegicus 81 Epn1 ENSRNOG00000015753 ENSRNOT00000021286 1 1 1 80 1 72302815 72308422 ACGTCTACAAGGCCATGAC 60 72302753 72302773 TGTTCTCTTTGCACTGTTGTG 60 NA Rattus norvegicus 81 Rprml ENSRNOG00000028436 ENSRNOT00000033276 1 1 1 62 10 91710982 91711000 CTTTCTGATGCAGGAACGC 60 91711026 91711044 CAGTACAGTCCCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taco1 ENSRNOG00000008405 ENSRNOT00000063973 3 1 1 81 10 94265599 94265618 CATTATCGAACAGTGGTCCC 59 94267015 94267038 GCATCTTCAGTCATCATTCCC 59 NA Rattus norvegicus 81 Svs6 ENSRNOG00000026346 ENSRNOT00000018510 1 1 1 78 3 160696419 160696437 AAATTCTCACAGTCGGCTG 58 160696571 160696589 CATCCTCATGGATGACGCT 60 NA DesignNoJunction Rattus norvegicus 81 Olr1067 ENSRNOG00000049897 ENSRNOT00000049954 2 1 1 60 7 9393216 9393236 TATTCTGCTGGGATTCTGGAC 60 9393176 9393197 CAAGAACAGTAAGAACAAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE6 ENSRNOG00000061639 ENSRNOT00000061297 2 1 1 93 20 4675217 4675235 TCATTGGAGCTCTGGTGTG 60 4674776 4674984 CAGCTGTCCTTGCCTAGAG 60 NA Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 1 2 2 80 5 57001657 57001675 AGAAGCTGTTGTGATTGGT 57 56999846 57001614 GCTTTCAACTGTACTTGCTG 58 NA Rattus norvegicus 81 Apon ENSRNOG00000033466 ENSRNOT00000043908 1 1 1 98 7 2676980 2677164 TTCAGACAGGACTGTCCTG 59 2676900 2676918 GAGTCTTCCATGGAAAGGC 58 NA InUTR Rattus norvegicus 81 RGD1560585 ENSRNOG00000060534 ENSRNOT00000078404 2 1 1 66 X 144001537 144001555 AGAAGTATGAAGCCCTGGC 60 144001489 144001511 CCGGTATAGTTTCTCATTTCACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr57 ENSRNOG00000015407 ENSRNOT00000020655 3 1 1 60 1 167937557 167937576 CATTCCTACTGCTTCCATCC 58 167937598 167937617 TGTTGACCCTGGTATCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363319 ENSRNOG00000028988 ENSRNOT00000041268 3 1 1 60 7 91756748 91756768 GAAGATCTGCAAAGTTGTCTG 58 91756708 91756726 TTTCTAGGCTTGGGCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf12l2 ENSRNOG00000031533 ENSRNOT00000047171 3 1 1 60 X 130824162 130824181 CTACCACCACATCATCACTG 58 130824121 130824143 ACGGATATCATAGAAGAGCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf13 ENSRNOG00000020315 ENSRNOT00000027530 1 1 1 80 2 211360900 211366160 TTTCTCTAAAGAACTGCGCTG 59 211366200 211366220 TCGAGAATATCCACTGACTCC 59 NA Rattus norvegicus 81 FAM187A ENSRNOG00000002918 ENSRNOT00000003892 1 1 1 60 10 90989601 90989621 CCTCAAGACCAAGTATCACAC 59 90989643 90989661 CTTACAGGACACTAGGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx10 ENSRNOG00000017944 ENSRNOT00000024129 3 1 1 87 1 219243701 219243720 AAGATAGTGGGCATGGACAC 60 219243769 219244072 GGAAGGCGTACCTGTATCTC 60 NA Rattus norvegicus 81 Gpr61 ENSRNOG00000019738 ENSRNOT00000026750 3 1 1 60 2 210943585 210943604 CAGCTGAGAAGAGCTATCAC 58 210940580 210943563 CCTCATGAAGGCATCTTTGC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Siglec5 ENSRNOG00000021474 ENSRNOT00000033648 3 1 1 80 1 98566183 98566203 GAAGCTTGGAATGACTATGGA 58 98565849 98566141 TGATTTGTCTGCCTGTGAG 58 NA Rattus norvegicus 81 Galp ENSRNOG00000022129 ENSRNOT00000034854 1 1 1 80 1 71354727 71354745 TTATTCCCGCTCTCCAAGG 59 71352668 71354683 ACTATGCGCAGATCTCCAG 59 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 2 2 2 80 10 90403056 90403076 AGAAGAAGGAGAATGAGTCCA 58 90402848 90403015 TCGTGATTCCTATCCGAGTG 59 NA Rattus norvegicus 81 AABR07055511.1 ENSRNOG00000045896 ENSRNOT00000072277 2 1 1 60 7 4620157 4620178 TAATTATCTTCCTCACCCTGCT 59 4620196 4620217 CGGAGAAAGAAGTACATTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000061114 3 1 2 81 20 4774544 4896479 CGGTTCATTATCGAAGTCGG 59 4774482 4774500 GCTCCATCCTCGGATTCTC 60 NA Rattus norvegicus 81 Uts2r ENSRNOG00000036669 ENSRNOT00000054926 2 1 1 60 10 110365214 110365232 CAACAGTTGCATCAATCCC 57 110365252 110365274 TAGGTACTCTCGATAGTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex15 ENSRNOG00000007748 ENSRNOT00000034325 1 1 1 80 16 62317348 62318994 TCCAAACATCCAAGCACTG 58 62317286 62317304 GCCTGTCAAAGTGTCAGAG 59 NA Rattus norvegicus 81 Htt ENSRNOG00000011073 ENSRNOT00000058166 2 1 1 80 14 81187915 81189177 CACTCACATTTGGGTGCTG 60 81187853 81187871 AGTGCCATCCTAGACTCCA 60 NA Rattus norvegicus 81 Gstm4 ENSRNOG00000019221 ENSRNOT00000025994 1 1 1 80 2 210836538 210836558 TTATATTCGAACCCAAGTGCC 59 210834903 210836497 AGATCTTCTTCAGTCCCTCG 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 3 1 3 80 20 4789700 4789718 AGCTGTGATCATTGGAGCT 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 Gatsl3 ENSRNOG00000006740 ENSRNOT00000009150 2 1 1 80 14 84448673 84449844 AGAGGGCTTTAAAGAGCTACC 60 84449885 84449904 CTGTGAGACACGTTCATCAC 59 NA Rattus norvegicus 81 Gpr88 ENSRNOG00000026953 ENSRNOT00000037068 2 1 1 82 2 219262115 219262533 CAAATCAAGCAGGCAAGTG 58 219262051 219262069 ATTCTGGCCAACTCTTCAC 58 NA InUTR Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864,ENSRNOT00000050275 2 2 2 80 9 52716793 52717105 AATTACTGAGCTTCTTCACACC 59 52717143 52717164 AGCAGTGAGTTTACAAACAGAG 59 NA Rattus norvegicus 81 Mapk8ip1 ENSRNOG00000058478 ENSRNOT00000079746 1 1 1 80 3 81296547 81296565 GTGTCCTTGAAATCAGCGT 59 81296311 81296506 TACATTTATTTCCCTTGGCCTC 59 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143,ENSRNOT00000079855 3 2 2 81 5 157354603 157354621 GGAACACTATGACAGCGTC 58 157349294 157354559 ATGAAGCATCTGGAAGTCAG 58 NA Rattus norvegicus 81 Olr45 ENSRNOG00000018508 ENSRNOT00000024961 1 1 1 60 1 167748320 167748338 TCCTTTCCTCCTCAACCCT 60 167748362 167748380 ATTTCCCGATCCCTGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 2 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532383 22534333 CTTGTAGACGTTCCTCTGC 58 NA Rattus norvegicus 81 Ficd ENSRNOG00000059799 ENSRNOT00000082809 2 1 1 126 12 48662167 48662931 ACTGGAGCCACAGATTCTG 59 48662059 48662077 GACTGAGACCCATTTGGGT 59 NA InUTR Rattus norvegicus 81 Rab35 ENSRNOG00000022014 ENSRNOT00000030031 3 1 1 80 12 46708091 46710931 ACCATCACCTCTACGTATTATCG 60 46708033 46708051 ATTGACAAAGGACTCGGCA 60 NA Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 1 2 2 80 14 89199470 89199490 ATCGACATAAGGAAACTCCTC 57 89197874 89199431 GTTATTGACGATATTGCACACC 58 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 3 2 2 82 9 7027016 7029226 GCCAATCTTAACCTGTGGT 58 7029272 7029290 TGAGTTGGGTATTTCAGGC 57 NA Rattus norvegicus 81 Olr104 ENSRNOG00000015876 ENSRNOT00000021254 1 1 1 60 1 168587093 168587113 GATCCTGTGGGTTGTAAAGTC 59 168587053 168587076 GGATAGAAAGTAGTACATAGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr104 ENSRNOG00000015876 ENSRNOT00000021254 3 1 1 60 1 168587032 168587050 GCTTGCAGTTACTGACCTC 59 168586990 168587010 GTAGATAGTGAGCATGGTAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem182 ENSRNOG00000028945 ENSRNOT00000049349 2 1 1 80 9 47538898 47572515 TGACTCCGCAATTATTTACCG 59 47572557 47572575 AGAAAGCTTGCAGTCAAGG 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000090090 1 1 5 60 20 4420925 4420948 GGAAGATACCTTCTATGTTGTCTC 59 4420967 4420985 GGTGACAGACACATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 3 2 2 80 10 98363506 98363525 CAGAAAGCGAAGGGAAACTG 60 98360536 98363468 TCTCGAGATCCCTATAAAGATCTG 59 NA Rattus norvegicus 81 Igf1r ENSRNOG00000014187 ENSRNOT00000019267 3 1 1 80 1 129187554 129187575 GTCATCATGGAACTAATGACAC 57 129187612 129192003 GACTAGATTATTCTCCACCTCTG 58 NA Rattus norvegicus 81 Lta ENSRNOG00000000838 ENSRNOT00000001111 3 1 1 139 20 4852802 4853183 AGCCTTATCTGGTTCTCCC 59 4853368 4853386 TGAGAAGCGAACACCAGAG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261,ENSRNOT00000052403 2 2 2 80 2 210749211 210749292 AGGATTCCAAGGAAACCAG 57 210748862 210748881 CCATCGATTAAGTAGGGCAG 58 NA Rattus norvegicus 81 Ykt6 ENSRNOG00000014785 ENSRNOT00000020693 3 1 1 80 14 86202514 86204124 AAATCATTCTGCACAACACC 57 86204165 86204185 GGACTTCTGATTTGGATACCA 58 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023,ENSRNOT00000067486 2 2 2 80 16 50390320 50390338 CCATTCACAATCGACCCTG 59 50388778 50390278 GAGCGTATAACCTGAGATCGT 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000089721,ENSRNOT00000091105,ENSRNOT00000077205,ENSRNOT00000077561 1 4 8 60 20 4363877 4363895 AAGTCCAACTACCGAGTCC 59 4363919 4363937 CAAAGTGACTTAGCCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf9b ENSRNOG00000009253 ENSRNOT00000012391 3 1 1 80 8 28385177 28385731 CTTGAGTCTCCCTTGTCCT 58 28385775 28385793 GTCGTCAGAGGATTCAGAC 57 NA Rattus norvegicus 81 Man1c1 ENSRNOG00000017087 ENSRNOT00000022956 2 1 1 80 5 152778110 152778130 AGGACGTGTATAGCAGTAACC 59 152777036 152778074 GATAGAGATATTTCAGTGTCTCAGC 59 NA Rattus norvegicus 81 Zbtb32 ENSRNOG00000042465 ENSRNOT00000063808 3 1 1 113 1 89044601 89044621 CTATGGAGCATCTTGTTGTGG 59 89044303 89044526 CAAGGTCAGTGGGATCCTC 60 NA Rattus norvegicus 81 Cenph ENSRNOG00000018615 ENSRNOT00000025129 3 1 1 86 2 30772843 30775642 CTGAGCAGGATGAAACTTTCAG 60 30770526 30770546 CTTCATGTCATCAGTGAGCAG 59 NA Rattus norvegicus 81 Ccdc13 ENSRNOG00000025643 ENSRNOT00000075439 1 1 1 80 8 130457572 130457591 ACCTGAAGATGAGTGACCTG 59 130456535 130457529 CATTGGCCAGAACCTTCTG 59 NA Rattus norvegicus 81 Ccdc13 ENSRNOG00000025643 ENSRNOT00000075439 3 1 1 81 8 130457572 130457592 AACCTGAAGATGAGTGACCTG 60 130456535 130457529 CATTGGCCAGAACCTTCTG 59 NA Rattus norvegicus 81 Adamts15 ENSRNOG00000009892 ENSRNOT00000013341 3 1 1 82 8 31982605 31982623 CCACGTGACAAGTGTAAGC 59 31982444 31982560 GTACCATCCACCACCTTAGG 60 NA Rattus norvegicus 81 Mast4 ENSRNOG00000010720 ENSRNOT00000061032 1 1 1 80 2 32497937 32497957 GCGTTTATTAAGCAGCTAGTC 58 32496562 32497896 ATCAAATTCCAAGCACTCCA 58 NA Rattus norvegicus 81 RGD1311744 ENSRNOG00000005960 ENSRNOT00000036054 3 1 1 80 8 43322686 43322942 AAAGTCTGATGACAACTTCACC 59 43322627 43322646 GTCTCCTTGAAGCCAAAGTC 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 3 7 8 103 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389528 4389546 GAACCCTTGAACCTGTTCC 58 NA Rattus norvegicus 81 PCOLCE2 ENSRNOG00000046848 ENSRNOT00000074047 3 1 1 83 8 103481970 103483592 AAGCAACTTTGTGTTAGCCG 60 103483638 103483656 ATGCTGATGATCGAGACCG 60 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900,ENSRNOT00000077719 2 2 2 81 1 72874660 72875011 CAAGCTGAAAGTCCTCCTG 58 72875056 72875074 CTAATAGCAGGGCATCCAG 58 NA Rattus norvegicus 81 Gk5 ENSRNOG00000010942 ENSRNOT00000067835 1 1 1 82 8 103965306 103965327 CACGAACTTGTATGTTTAGCTG 58 103965367 103980388 GTGAAGAGGTCTAACTTCTGAG 58 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 3 2 2 80 8 62532077 62532095 ACAACTTCCAGCCTTATCC 57 62531056 62532036 TCTCATGTAGAAATCTAAGGGC 58 NA Rattus norvegicus 81 Tti2 ENSRNOG00000023494 ENSRNOT00000032467 1 1 1 80 16 64742484 64744283 CCCACTTGAATAAGGAAACCTG 59 64742425 64742443 GCTGAGTGACTTGTTGGAG 59 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997,ENSRNOT00000080257 3 2 2 86 3 2717920 2717938 CAGACTACGTCAAGTTCGC 59 2717720 2717870 AGTCTCTACCCAGAAGGCT 59 NA Rattus norvegicus 81 Dpy19l1 ENSRNOG00000026589 ENSRNOT00000036738 3 1 1 80 8 25591194 25592214 ATGCAGGTCTAAGAGCCAG 59 25591132 25591152 TCAATTCCTTCTTCACGTCCT 60 NA Rattus norvegicus 81 Rnf5 ENSRNOG00000000438 ENSRNOT00000000501 3 1 1 87 20 4367442 4368463 CACCTCTATTGTTGGCCCT 59 4367280 4367299 TGCTTATTCCGGCTTTACAC 59 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 2 2 2 82 3 161237439 161238011 ACCCTCATGATGTCTGGTG 59 161238057 161238075 CCATGGATGGTTCCTACCC 60 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980,ENSRNOT00000012545 2 2 2 80 8 122115283 122119373 CTATGCATCACTAGAGGACAC 58 122123056 122123075 GTAGAAAGCTTGGCTCTCAC 59 NA Rattus norvegicus 81 Cldn18 ENSRNOG00000030386 ENSRNOT00000052043 1 1 1 80 8 107940519 107941259 GTTCATCATCTCAGGAGTCTG 58 107940459 107940477 GTGGACATCCAGAAGTTGG 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152,ENSRNOT00000048985 3 3 8 100 20 4485154 4485262 TTTACTACTGGTGGGCTGC 60 4485325 4485344 CCATTGAGGAAGATGGTGGT 60 NA Rattus norvegicus 81 Adam26a ENSRNOG00000038743 ENSRNOT00000059182 3 1 1 101 16 51749027 51750596 ACCTGATCTTATGCCAGCT 59 51750661 51750679 AGTCATAAGAGCAGCAGGA 58 NA InUTR Rattus norvegicus 81 Ndor1 ENSRNOG00000010616 ENSRNOT00000014445 3 1 1 85 3 2474438 2474729 TTACTCCGTGGCGAATCTC 60 2474371 2474389 TCATGTTGTCAGGAGGGTC 59 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 3 2 2 80 2 211786170 211787027 CCAAAGTATCAGGGTATAGCA 57 211786110 211786131 CTACTGAGGTATTTCTCCTGTG 58 NA Rattus norvegicus 81 LOC691807 ENSRNOG00000014654 ENSRNOT00000019647 1 1 1 80 2 227095736 227095755 GGATCTCTGGCTCTTCATCC 60 227095796 227096496 GACTCTCAGCAAACCAATCAG 59 NA InUTR Rattus norvegicus 81 RGD1562618 ENSRNOG00000026238 ENSRNOT00000033397 1 1 1 88 8 63287492 63287510 GCATGAAGATGGTCATCGG 59 63287562 63296310 GATCTGACTCACCACCTCC 59 NA Rattus norvegicus 81 LOC100910936 ENSRNOG00000049753 ENSRNOT00000075252 3 1 1 60 20 1133895 1133915 CTGAAGCACCTTTCCATTCTG 60 1133934 1133955 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek5 ENSRNOG00000048769 ENSRNOT00000058091 1 1 1 80 16 74814778 74816537 CTCATTCCAAGAGAACAGCA 58 74816580 74816598 TGCCTCTGTATCCTTTCCA 58 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566,ENSRNOT00000012915 2 2 2 85 5 61720957 61724858 CCTTACAGGCAAGATTCGG 58 61720890 61720908 CTTCCATGTAGAGTCGGGT 59 NA Rattus norvegicus 81 Padi4 ENSRNOG00000006855 ENSRNOT00000009081 1 1 1 80 5 159262804 159263052 ACGTGGAGAGCTGTATTGAC 60 159262743 159262764 GTATATCAATGATGTCGCCCTC 59 NA Rattus norvegicus 81 Pomgnt2 ENSRNOG00000019492 ENSRNOT00000026363 1 1 1 60 8 130616822 130616840 GACTGAAAGGCTGAACGTG 59 130616780 130616799 GACCAGAATGTATTCCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912186 ENSRNOG00000050017 ENSRNOT00000073897 3 1 1 60 8 42348569 42348588 TATGTACCTAAAGCCCTCCT 57 42348609 42348629 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpte2 ENSRNOG00000024837 ENSRNOT00000034670 1 1 1 80 16 74591168 74593230 CTAAACGCAAAGGCAAGTC 58 74591106 74591128 CTCTACTCCTTGAAACTTAGAGC 59 NA Rattus norvegicus 81 Olr1683 ENSRNOG00000047702 ENSRNOT00000047478 1 1 1 60 20 556123 556144 TAGTAACTCCTACACTGAACCC 59 556084 556105 GCTCCCTTTACATCCTTATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1691 ENSRNOG00000047094 ENSRNOT00000052186 1 1 1 60 20 794606 794629 CAGATATTCTCTACAGTTCTCAGG 58 794569 794589 TCGAGAAGACCTTAGTTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrsl1 ENSRNOG00000026049 ENSRNOT00000018892 3 1 1 80 20 48860402 48860914 GCTACAGTACGGTCACAGG 60 48860340 48860358 TTGAACCCTTCCTGTCTGG 59 NA Rattus norvegicus 81 AABR07026236.1 ENSRNOG00000039287 ENSRNOT00000060162 2 1 1 81 16 68699653 68700273 AGGAGAGGAAGAGTCAGAC 57 68699590 68699608 CAATGACTGATGGCTCTCG 58 NA Rattus norvegicus 81 Olr1682 ENSRNOG00000050389 ENSRNOT00000075114 1 1 1 80 20 528609 528630 ATACCCTCATAATGAATCAGCG 58 438099 528571 CTGTGACACCATAGGTAATTCC 59 NA Rattus norvegicus 81 Focad ENSRNOG00000024402 ENSRNOT00000058387 1 1 1 80 5 106697629 106699624 GAACTTCCGTTCCTACCGA 59 106699667 106699686 CTCCTGTGATGAAGAAGCCA 60 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126,ENSRNOT00000079020 3 2 2 80 3 52597805 52599679 TTGAAGGAATGAGGGTAGTGG 60 52597745 52597765 ATATAAGGCACACGAGAAGCA 60 NA Rattus norvegicus 81 Xkr5 ENSRNOG00000028636 ENSRNOT00000032368 3 1 1 80 16 75758042 75760979 GATTTCTGATTGGGTGTGCA 59 75761021 75761040 TGAAGTTCTCCTGGATGTCC 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000091208 3 1 2 93 3 156775223 156775241 AGAACAGTGAAGCATGGGA 59 156774314 156775166 TCTGTATCGAGCTGACGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769,ENSRNOT00000081338 3 2 2 81 3 66675266 66675287 ATCCCTTGTGATTCTCAATGAG 58 66719385 66722390 TGCATTCTGGGATTCTTGTG 59 NA Rattus norvegicus 81 Angpt2 ENSRNOG00000016696 ENSRNOT00000022774 1 1 1 80 16 76010278 76013915 AGTCCAACTACAGGATTCACC 60 76013957 76013975 AATCACTTCCTGGTTGGCT 59 NA Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000075600 3 1 2 80 5 98998440 98998460 ATCTAGAGACCTTGAAGGCTG 59 98998501 99103018 GTAGTTTCCACATCCCTGGT 60 NA Rattus norvegicus 81 Adrb3 ENSRNOG00000012674 ENSRNOT00000016907 2 1 1 160 16 69005099 69005118 TTCAACCCGCTCATCTACTG 60 69005241 69005653 CCATCAAACCTGTTGAGCG 60 NA Rattus norvegicus 81 Cbfa2t2 ENSRNOG00000016352 ENSRNOT00000021907 1 1 1 80 3 150005853 150010339 CCTACAGCATTAAGCAATGG 57 150010382 150010400 GTTGCTGAATCTCTGTGGT 58 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 3 2 2 91 3 176042785 176042804 GTCATTGCCTTTGTGGTCTG 60 176042857 176043908 AAGAGGAACGTAGTCCACTG 59 NA Rattus norvegicus 81 Traf6 ENSRNOG00000004639 ENSRNOT00000006148 1 1 1 80 3 91265006 91266225 ATGAAGAGAAAGAGATCCACGA 59 91266262 91266284 CTCTTATGAGGATTGTACCACAG 59 NA Rattus norvegicus 81 Wfdc6a ENSRNOG00000042526 ENSRNOT00000037518 1 1 1 80 3 161039147 161039165 AGTGTCCGGACAAGAAGAG 59 161037629 161039104 GCAGACTGCATATGTCTTCC 59 NA Rattus norvegicus 81 Plcg1 ENSRNOG00000051490 ENSRNOT00000078909 3 1 1 80 3 156746603 156746783 CACTTTGAGGACTGGAGAG 57 156746827 156746845 CCCTGGTACTCAAGAAGGA 58 NA Rattus norvegicus 81 Ift52 ENSRNOG00000007692 ENSRNOT00000066260 3 1 1 85 3 159393098 159393119 CACTTCTGAGAAGTTAATTGGG 57 159393165 159393387 TCAGGACTTCAAACTCTGC 57 NA Rattus norvegicus 81 Prr5l ENSRNOG00000004666 ENSRNOT00000006291 2 1 1 80 3 91310420 91316912 TTATCCGGTTCAGGGACAG 59 91310358 91310376 TTCACCTTCAGCAAGACCA 59 NA Rattus norvegicus 81 Il1rn ENSRNOG00000005871 ENSRNOT00000007949 3 1 1 80 3 1463317 1464863 ATGCAAGCCTTCAGAATCTG 59 1464904 1464924 TTGTAAGTACCCAGCAATGAG 58 NA Rattus norvegicus 81 Defa24 ENSRNOG00000030524 ENSRNOT00000018529 2 1 1 89 16 75345276 75345912 AGATGCAGTCTTAAGAGATCTG 58 75345208 75345227 TATCTCTTGTTGCAGATCCC 57 NA Rattus norvegicus 81 Tbpl2 ENSRNOG00000033682 ENSRNOT00000050371 1 1 1 80 3 1098674 1108823 GCAGTTCAGTAGTTATGAGCC 59 1098614 1098632 AAGATGAGCAGCACAACCT 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962,ENSRNOT00000034141,ENSRNOT00000006634 1 3 3 80 3 51416113 51416131 GAGGGAAATCGAGTCAGTC 57 51414128 51416072 AATAGGGCAATCCTATTATCCC 57 NA Rattus norvegicus 81 Dcun1d2 ENSRNOG00000019473 ENSRNOT00000026370 1 1 1 80 16 81611602 81612602 TAACTACGATGAAGAAGGAGCA 59 81612643 81612661 CTCCCTCCTGTGACTACTG 59 NA Rattus norvegicus 81 LOC100909545 ENSRNOG00000049613 ENSRNOT00000071681 3 1 1 81 3 160649164 160649412 GATAGGAATCTATGGTGGGAC 57 160649103 160649121 GAGGAACTGGCCTTTATCG 58 NA Rattus norvegicus 81 LOC685718 ENSRNOG00000030299 ENSRNOT00000048912 2 1 1 60 16 13950724 13950745 TGAAGAACAGAAACCAGAAAGG 59 13950764 13950784 CTTAATTTCCTCTGCAGCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685718 ENSRNOG00000030299 ENSRNOT00000048912 3 1 1 60 16 13950725 13950746 GAAGAACAGAAACCAGAAAGGG 60 13950765 13950785 GCTTAATTTCCTCTGCAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2a ENSRNOG00000047669 ENSRNOT00000072935 3 1 1 115 19 37046670 37046689 CCATCTTGAAGCCAACTACC 59 37046766 37047863 TGAGGTCAAATTTCATGCCC 59 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000031743 2 1 2 120 2 186439636 186480159 CTTTGTGACTTTGGCTTTGG 58 186439535 186439553 AGAGTAGTTGAGGAGCACG 59 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 2 3 3 140 5 171571047 171571440 GCTTGTGAACACTCTTGCC 60 171571544 171571562 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 2 3 3 140 5 171571047 171616777 GCTTGTGAACACTCTTGCC 60 171616881 171616899 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 3 2 2 80 5 171627703 171628558 ATCAGCAACAAAGGAGAACTG 59 171627643 171627662 TTGCAGTGTGATCTCATCAG 58 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181 3 1 2 123 3 37939191 37947211 GTTCAATCACCAGGAGCAC 59 37938649 37938670 CACATTGCTTCCTATTGTAGGA 58 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859 3 1 2 84 20 5540749 5540767 GTCCAGCCGAAACAAACTG 60 5540814 5546590 ACCCAAGTGGTATTCATGCT 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000064712 2 1 2 80 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138353492 138353583 AGCCTGGAACTCAATCTTCC 60 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166 1 1 2 82 8 118145246 118145264 ATCTGAAGAGTGTCCGCTC 59 118145310 118153786 GTTCTGAATCTGAACCCGG 58 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166 2 1 2 83 8 118145245 118145263 GATCTGAAGAGTGTCCGCT 59 118145310 118153786 GTTCTGAATCTGAACCCGG 58 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629 2 1 2 82 2 188330257 188330278 ACTGAAGAAAGAGAAGTTGGAG 58 188330318 188337246 GATACTTTCCAACATGAATGGG 58 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000076389 2 1 2 171 2 30181889 30187547 AGGATTCATGGTTGGTAAAGAC 59 30181373 30181763 GAGAAATCTTGGACTATATGCTCTG 59 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900 1 1 2 80 2 30219307 30219326 CAAGTTATATGGCGAGGAGG 58 30218263 30219266 ATCATGCATTCTACTCCAGAC 58 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000077096 1 1 2 82 2 123824700 123824718 TACTGAAGGCCTACTTGCA 58 123824762 123848105 CAGCTTGTCACTAAATTGCTC 58 NA Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 1 2 2 83 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356882 6357486 GATAGAAATCTGTTAGGCTGGTC 59 NA Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 3 2 2 87 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356885 6357490 GAGTGATAGAAATCTGTTAGGCTG 59 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172 3 1 2 80 8 132667136 132667159 TATTCTACCTGAGTGACTACATCC 59 132666260 132667097 TAATCACCACATGGCCCTG 60 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456 3 1 2 80 2 30363119 30363139 ACCTATCTGATCTGCTTTCCC 59 30363178 30363409 AAACTTGGCTTTCATTCTCCTG 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 2 2 3 80 2 188404347 188404985 CAGATCCAGGACGACTACC 59 188404285 188404304 TTTGTTGTCCTGGATGTCAG 58 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343 1 1 3 92 14 86159553 86164228 GTTGTTGACTCTGGTCGAG 58 86159479 86159497 TCCATCTCCTTCTGCATCC 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000067331 3 1 2 80 5 28092437 28092455 GGCTTATCGGAGTTTGAGC 59 28050120 28092395 CGCATAGATCTGAATCACTCC 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 3 2 2 80 2 183529493 183534331 ACACATATAAGTGTACTCGGCA 59 183529434 183529453 GAGCTTCAAGTTCAAGGTCC 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 2 2 2 80 2 183529494 183534333 CAACACATATAAGTGTACTCGGC 60 183529436 183529455 GCTTCAAGTTCAAGGTCCAC 60 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 3 2 2 80 2 183529494 183534332 AACACATATAAGTGTACTCGGC 58 183529435 183529453 AGCTTCAAGTTCAAGGTCC 58 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000024023 1 1 2 80 2 30309576 30309597 ATGTGAATAATGCTGAGAGTGG 59 30304438 30309536 CTGTCTGTTCAGTTTCTGGT 58 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000024023 2 1 2 80 2 30276615 30276639 CATAACTCTACTTACAATGGGAGAC 59 30275238 30276582 AATACACATACTCCTACATCACCC 60 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 2 2 2 84 1 79649698 79649717 GAGGATCTGCAGGAAATGGT 60 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076 3 1 3 80 2 189423746 189424630 AAGAAGCAAACAGCTAGAGG 58 189424671 189424691 GAATACTTGTCCAGCTCATCC 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 1 2 2 80 3 6494070 6494653 AATTCCTCCAATCCGGCTC 60 6494696 6494715 ATTCTTGATGGTCTCCTCGG 59 NA Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 3 1 1 62 X 57186416 57186437 TAAGAGCATGACAGGATCTGAG 60 57185879 57185900 CCACATAAACGAAATATGTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 1 3 3 80 9 94953069 94955354 TCCAGCACCATTATCAAGGA 59 94955394 94955415 CGTGAGCTTCACTTTGATATGG 60 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 1 3 3 80 9 94959534 94961819 TCCAGCACCATTATCAAGGA 59 94961859 94961880 CGTGAGCTTCACTTTGATATGG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000070871 1 4 7 80 11 46290866 46290887 AACTTACGATGTTGTCTCAAGC 59 46289808 46290828 AGAATAGGATCACTTGTTGCTG 59 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 2 2 2 80 X 22410983 22411003 AGTACGCTACTACATGAGAGG 59 22410684 22410943 TGATTCTTGGCTCTACTTTCC 58 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000028763 3 1 2 199 1 222531359 222531377 CGAACTAATTTCCCACGGG 59 222528275 222531196 GGTTCATTCAGGTTCCTGC 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000087120 3 1 3 87 4 7228981 7229246 CTTAAAGTGGGCATAGTGGG 58 7228913 7228931 ATTCTTCCTGGACGTAGGT 58 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797 1 1 2 80 17 39509597 39510954 ACATTCCTTCTGCAAACTCC 59 39510996 39511015 AGACATGCAGGAATTGATGC 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000036781 3 1 3 108 15 39732049 39735103 AAGATCATACACCTGTGACTC 57 39728177 39731984 CCTGTAGATAGAATGATACAGTCC 58 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 1 2 2 80 17 9998062 9998081 AAGCACATCGTTATCAACGG 59 9997873 9998022 ATTGATGTCTGTTGTCTTCAGG 59 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000091934 1 1 2 93 4 145239971 145239992 GTTCTCGACTATTTCTTTGAGG 57 145240535 145240961 GGAAATCCTTCGGTTTGGA 58 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 3 2 2 80 X 39835628 39850825 AATCATCAGACTGTGGTGG 57 39850867 39850887 AGTTAAGATAACACCACTCGG 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 2 2 3 80 8 90934445 90934464 CAAGAAGGAAAGTACAGCGA 58 90932338 90934405 TCTTTCCCATTCACATTCAGAC 59 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 1 2 2 86 9 9142230 9142251 AGAAGTGTAAATTCGAGAGGGA 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085 2 1 2 80 17 18037404 18038286 TGTTTAAGAGTTCTTCCGGGA 59 18041211 18041229 CAAACTTGCCGATGTTTGC 59 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000067037 2 1 2 181 13 88638559 88641968 TTTCTCGGACAGTTGACCA 59 88638396 88638414 ATTCCTAAGGTGCTGGCTG 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863 1 1 2 80 1 188503156 188507610 CCTTTATCAAGCACCAGCA 58 188507651 188507672 CGTGCATAGTCTTACAAATGTG 58 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882 2 1 2 81 18 31812387 31820031 TCGATAATGTTCACCCGTC 57 31812324 31812342 TAGTTCTCTGGGATGAGGC 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000019059 3 1 2 95 1 141875222 141875240 AGACTCTGGAGAAGGTGTG 58 141874715 141875163 TCAGCTTCACATTGCTGAG 58 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 1 2 2 80 1 171978923 171978941 CACAACACCAGAAGGTTCC 59 171976641 171978883 GAGATGGACATAGTTACCTACAG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000014962 2 1 10 82 2 231409490 231547666 CATCCTGGTGACCAGTCTG 60 231409426 231409447 AGATACTCCACAACTTTGTCCA 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637 2 1 10 80 2 231269943 231275857 GACAACAGCAGTTTCCTAGTC 59 231269883 231269901 TCTGAGCCCATTGTGTCTG 60 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 2 3 3 80 10 4441837 4441857 ATTCTTCCAGGATTCATCCTC 57 4441896 4443389 TATAATCACTATCTGGGCATCG 57 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000075494 1 1 2 80 9 9735482 9735502 TCAAGGTCTTCTCTGGCTG 59 9735544 9735564 CTCCAGAATCAGCCATTTGAC 59 NA Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 1 2 2 80 1 267018933 267018952 AGCTTCTGTAATGCCATCAC 58 267018993 267019344 CTGCTTCTTGGTGATCTTCAG 59 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 2 2 2 91 10 37757309 37764325 CCTGTGCTATGGTATACCAG 57 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000030161 3 1 2 85 12 19515799 19519213 CACATGGAAGAGGTGTTCTG 59 19519261 19519279 TCTTCAGAGACAGGATGGG 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 2 2 2 80 3 6013942 6013961 AGACACTCTGGAAACATCAG 57 6013122 6013902 TATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733 1 1 2 80 14 91558356 91575081 AAACTTGGAGGTTGGACGA 59 91575125 91575143 CAAGCGACTTAATGTGCCT 59 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000071469 2 1 2 83 17 14521288 14521306 GAGCAGCAAGCAGAATGAG 59 14521350 14521623 CTCCAGTTTCTCTGTATCTGTG 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 1 5 6 80 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550367 157550385 TGTGTATGCTCGGTGACAG 60 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 2 1 1 132 7 26144352 26144370 TTTAGCTGCTGCCCTAAGG 60 26141369 26141388 CTGTCGTGTTGAATCAGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004577 1 1 2 80 13 80697727 80699828 GAAGTTTGCTACTACTGTGCG 60 80697667 80697686 GTCTCTGTGACAACTTCCCA 60 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672 2 1 2 80 4 71664399 71664419 ACAATGCTAACTGTCCAAGTC 59 71664458 71667541 CTCTATCTGTCTCATCTCCACG 60 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 1 2 2 113 1 87046663 87047024 GCTTCAAGACTGTGATCGG 59 87047101 87047119 TCTTCACAGAATGCAGCTG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 1 3 4 80 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534705 43537130 ACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 1 1 1 125 1 100810415 100810434 CGTAGACTATGGGAAACTCC 57 100809057 100809075 CAATCAGAGAAGCCGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 3 1 1 126 1 100810415 100810435 TCGTAGACTATGGGAAACTCC 59 100809057 100809075 CAATCAGAGAAGCCGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 2 2 3 80 9 10359438 10369875 CAAAGGACAGAAGAGATCTGC 59 10359302 10359321 GGGCAATAGTTTCCATCCTC 58 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 1 1 1 60 10 40193200 40193218 AAGGAATCCACACTGACCA 59 40184575 40184596 TCTGTAAGAAGATCTTTCCTGG 57 NA DesignNoJunction Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 1 2 2 80 8 11909171 11909192 TGGATGATCGCTTTATTCAACC 59 11909232 11911912 CAACCCGCTCCTTATATTGC 59 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894 2 1 2 82 9 10164671 10164890 GCTGAGTCATGACAATATCTTGG 60 10164611 10164629 TCCCTGACTCTAGTGAGGG 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 3 2 2 80 13 99428802 99430263 AGATCAGACCGAGAAACAGG 59 99428741 99428759 CTGGCGTGTTTCTAAACCA 58 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 2 3 3 109 2 231059008 231059026 CAGGAGACTGTAGACTGCT 58 231059986 231070096 AACAAACTCTTGGCTGCTG 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 3 3 3 110 2 231059007 231059025 GCAGGAGACTGTAGACTGC 60 231059986 231070096 AACAAACTCTTGGCTGCTG 59 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000091101 1 1 2 95 1 88955922 88955942 CAAGAGGCTCTGAGCTGAG 60 88961099 88961118 GTTGATTCTGTTCCGTGCTG 60 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 2 1 1 62 15 18521091 18521111 TCAGAATGATGTGCTCATGAG 58 18516924 18516943 GTAGCAGAGCTGATGAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 2 4 5 80 4 22296909 22296930 CATCATGAATCAGGAGATAGGC 59 22296184 22296869 TTGGAGACGTCATCTGTGAG 60 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202 2 1 2 80 2 61409226 61411956 GTCGAGCAGAGTTGAATCC 58 61409164 61409183 AATCATGCTCTGCTTTGAGC 59 NA Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 2 2 2 80 3 7053732 7053750 GGCAGAATGGAAGGAAGGT 60 7053794 7054270 TCCTGCTCTGGAAATCGTC 60 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000051640 1 1 2 87 1 100858670 100858769 CATGTTTAGCTACAGGAAGCAG 60 100858817 100858835 CTCCTGTAACCGGAATGGG 60 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 1 1 2 68 20 1815089 1815107 GCATGCTCTGATGCTTCTC 59 1814878 1814896 AACAGACTCAGTCCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000046215 3 1 2 87 2 60564107 60564125 AATGCAGGAATTCAGAGCC 58 60561392 60563570 CATCACTCAACTGCTTTGCT 59 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401 2 1 3 81 7 116158778 116198846 GTATCAAGAAATGTGTATCGCG 58 116158718 116158737 TACTCTGTGCTACCATCTCG 59 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000085681 1 1 2 80 10 81824278 81824297 TTGGAGAGGATCTTCCACTG 59 81824339 81827374 AAGTTCTGGATTTCTGCCAC 59 NA Rattus norvegicus 81 LOC100365995 ENSRNOG00000031385 ENSRNOT00000041100 3 1 1 91 4 70617024 70617405 AGTCTTGGTGTGAACAACC 58 70617460 70617478 ATCTTTCCAGGGTAGGAGG 58 NA Rattus norvegicus 81 RGD1563590 ENSRNOG00000038231 ENSRNOT00000045816 1 1 1 60 X 60989962 60989981 GTAAAGGCTTACCCAAGACC 58 60989921 60989942 CCTTGAATGAAGATGATACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh18 ENSRNOG00000010535 ENSRNOT00000014013 1 1 1 80 2 74585766 74617041 CTTTCCTTAAAGAAGCCACTG 57 74617081 74617101 ATCCAGATGTGTATTTGCTCC 58 NA Rattus norvegicus 81 Ptrh2 ENSRNOG00000004288 ENSRNOT00000005661 2 1 1 129 10 74002173 74009361 GAAGCTTCAGATGCTTTCCA 59 74009453 74009471 GAAGATTCCAAGGTGGCTC 58 NA InUTR Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000073209 3 1 2 80 10 59682176 59682194 TTATGAAGTGGAGCGGAGG 59 59682237 59683684 AGTCATCCTCACAAAGCTCC 60 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745 2 1 2 80 17 43332385 43338396 GCCAACAAATGTCTCAAGGA 59 43338439 43338457 CCATCTTTGCCCAAGTTCC 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056 3 1 2 81 10 34957453 34957471 AACAGCAGTATGGCTCTGG 60 34956303 34957412 TAATTTGTACTACCCTGACCTCC 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770 1 2 3 87 1 193254246 193255710 GAAGGAGAGCTTTGGTGTG 59 193254177 193254196 GAAAGCAGGAGATATGTGCT 58 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417 2 1 2 114 12 13101946 13101966 GCCAATGTTATGGTAGATGGA 58 13102041 13109085 TTAAGAACACGTCTGTTTGC 57 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857 1 1 2 80 1 218435364 218435382 CTACTTCCGGAACCTTCCA 59 218433533 218435320 AACAAGCTTCCATCAGGGT 59 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 3 2 2 80 1 211381620 211383134 AGCTTTCTAAGACCCTGGAG 59 211383828 211383849 TTTGTTTCCGATACCTCAACAG 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 1 2 2 80 18 51568426 51568444 GGAAAGCTCTTTGTGTCGG 59 51568485 51571806 GGCTGGGATAGAGATCTTAGTG 60 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573 1 1 3 80 5 151044557 151046096 CGCAAGAAGATGTCCTTCAG 59 151044496 151044514 CCCAACCTTACCTGCTCTC 60 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000080655 3 1 2 83 17 45255678 45255697 AAAGTAGCCAGATGGAGTCC 59 45255739 45256025 GGGTGACTACTCTAACTTCTGAG 60 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000016145 1 1 2 98 8 48724404 48724425 TGGAATAGATTCTCTTCTCCGA 58 48724092 48724345 AGCTCACATCTGATAGGCA 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 2 2 4 80 15 34752194 34752212 ATGTGACCTTCTGTGGTGG 60 34752254 34752848 CAGTGATTTCCCTTCCATGAC 59 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 1 2 2 80 13 47320051 47320941 CTCCTGTTCTTGGTGACTG 58 47319989 47320010 GGAAGGATACCTCATCTAACTG 58 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700 3 1 2 114 11 53202355 53215939 AAAGCCAGCAAAGGAAGTG 59 53222584 53222603 TATAAGCAGGCTCTGTGGTG 60 NA Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 1 2 2 80 9 65659959 65661737 GGAAAGATGTCCTCGAGGT 59 65661780 65661799 CTCGGGTTGTCTTTATTGCT 58 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056693 2 2 5 80 12 52397970 52398133 CTTTACTTCGTGTGGTACGTC 59 52398175 52398193 GGTGATGATGGAGCTCTCC 60 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536 3 1 2 93 9 66902641 66903415 AATGACCAGTGTCTCTGAAGAG 60 66903469 66903487 AAGACTGTAGCTACTGGCG 59 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503 3 1 4 110 5 115076522 115203044 TAACTGCATTGCACAGGGA 60 115076430 115076450 AGAAAGGCAGGAAAGAGTCTC 60 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729 3 1 5 81 13 47415479 47421228 GCAAATGGACATAGGGAAGTG 59 47415418 47415437 ATCAGGAGAGCAAAGTGAGG 60 NA Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 3 2 2 81 2 197752733 197754358 AGAAGCAGGATACACAGGAG 59 197754402 197754420 AGGCTTGGATATTTGGCCT 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000076614,ENSRNOT00000010065 1 3 4 60 7 116747360 116747379 AAGGTGACTGACTTCTTCCA 59 116747550 116747571 ATCGATTCTTGGTTGAGAACAC 59 NA DesignNoJunction Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991 1 1 3 97 9 10632348 10632366 TACCAGGTCCACTATGTGC 59 10632427 10634085 GTGATCACCATTTCCTGGG 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 1 2 5 81 1 20916153 20916171 TACTACAGTCCAGGATGGC 58 20903361 20916109 ATGTGAACTCTTTCCCTCAG 57 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619 2 1 3 80 4 181214888 181214906 TCATTTAGACAACCCTGCG 58 181214948 181214970 TGCAATATCTGTTCCAATCCC 59 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000088757 2 1 3 80 20 2095466 2096769 CAAGGAAGGAGAATCGGAG 57 2096813 2096831 CAGTGTCACTTGACCACTC 58 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117 1 1 4 84 19 41140808 41142772 CGCAGGAGAATGAAGAGGA 59 41140742 41140760 GAGATCCCTCGGCTAAGTG 59 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000082191 1 1 2 128 15 57242187 57242315 AAGATGGCTGTCTGTCACC 60 57243593 57243611 CATTGCAGCTGATGTACCC 59 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000064385 1 1 2 83 11 61253476 61253497 ATTAGCAATTCCTGTTCTCCAC 59 61252350 61253434 CTCAGTCTGCTTTGTTCTTGG 60 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000081934 2 1 2 87 3 111447118 111447138 CAGGTTCTAGTAAGAAACCGA 57 111447186 111450088 GGTTTCAGCTTTCCTTTGTG 58 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000066313 1 1 2 81 17 43500546 43500564 AATTCCACAATGGCTGGTC 58 43499607 43500100 TTCTCCAATCCAGAAATGCA 58 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 3 2 2 81 5 100935356 100935916 GTTGTGAAGAAATATCGCGG 58 100935294 100935312 CACAGGATCTTCCAACGAG 58 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000064637 2 1 2 85 20 12885585 12885606 GGAAATACACTGTTCCCTTGTC 59 12882705 12885542 ATCTTCAAACCATCCTTGACTC 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000014211 2 1 3 80 5 57454211 57454231 CAAATGAAGAACTGAATCGCC 58 57454067 57454172 GTAACTCCTCCACTTGTAAACG 59 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 3 2 2 80 6 27491771 27491791 ATAAGCATGTACCTGATTGGG 58 27487515 27491733 TTCCATCTACTCCATCTAGAGTG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915 1 1 5 80 7 120768817 120769849 TACTTAATGAGTTCCGGTCTG 57 120768757 120768777 ATCTATACAAACCTAGCCCAC 57 NA Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 3 1 1 103 1 264893919 264893937 ACACAAAGGACAGGTTCAC 58 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000083425 1 1 2 86 1 44065807 44065825 CTCACTGCACAGCTTACAG 59 44065872 44067243 CATCAACTTCCTGGTGAAAGAG 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000044390 1 1 2 80 1 214040417 214041125 CCACAACAGGTACATACAGAC 59 214040357 214040375 TCAAAGAAGTGTTCCGCAG 58 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 3 2 2 80 9 66013520 66013540 AGAAGCTATCAGAGCATTCAG 58 66009842 66013479 CTTCTTCTACAAGAGGCTGG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372 1 1 4 80 X 53505021 53516729 GTTCAAGAGGACACAATGTAGG 59 53516768 53516788 TGACTGAAACTAAGGACTCCA 59 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 2 1 1 60 1 88457638 88457656 GAAGAACATCGATCTGCGG 59 88461535 88461555 CATCCTGTGTCCTTATCTGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 1 2 2 89 2 189995076 189995094 TACAAGATCTGCCAGTCGG 59 189995556 189995574 ATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674 3 1 2 86 13 48679954 48690250 TCGGCCTGTCAGAAATAGG 59 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000089894 2 1 2 99 10 104141685 104141703 GATGAGGAGCTCCTCTGTC 59 104141046 104141302 ATGGTTCATTCTGGAACAGGT 60 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 2 2 3 80 6 76685802 76700294 CGACAGCATTGTGAGAGTG 59 76700335 76700356 CTCAAGCCTTCTTATCTTCTCC 58 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235 1 1 2 116 5 99468333 99470864 TAATTACTTACGTGCCTGCA 57 99465732 99468255 CTGGAATATCTCTGCCAGTG 58 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235 3 1 2 117 5 99468334 99470865 GTAATTACTTACGTGCCTGC 57 99465732 99468255 CTGGAATATCTCTGCCAGTG 58 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 1 1 1 76 X 152196371 152196389 AGAAGACCTGGAAGACCCA 60 152196559 152196577 GCAGAAAGTCCACCAAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076 1 1 2 86 10 25842017 25847792 ACATGGAACAGGAGGAAGTG 60 25841950 25841968 CTTTGTAAACCGCTCTGCC 60 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000085301 3 1 3 86 2 236627158 236627943 GATGAAAGGCTTCACTGGG 59 236627992 236628011 TTGACATCACAAGAATCCGT 58 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881 1 1 3 80 17 43664751 43665702 CAGTAAGGTCACGAAGTTGAG 59 43665744 43665762 TTGTCTTCATGCACCTCAC 58 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776 1 1 2 88 15 52295061 52295079 CTTCCTATGGCAGGACCAC 60 52294173 52294853 TAGGGATAGATCTGGGCTCC 60 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 2 2 2 80 13 44629153 44629171 AAATTTGCCGTCGAAAGGA 58 44629214 44629672 TATCAGCAACGTCTCTTCCT 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000064331 2 1 2 80 17 55269462 55270580 TAATCTGCTCTGGGAACCTG 59 55269401 55269424 GATACAAAGGACAGGTGTTTATGG 60 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 1 2 3 80 20 13966589 13966607 CATGATGGGCGGTAAAGAC 59 13966648 13966868 TCCTTAAACCTGCAAATGACAC 60 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 3 1 1 61 X 93065481 93065500 ACCTAAATTGGCAAGAGTCC 58 93065313 93065331 ATCTGACAGTGCCATAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 1 2 2 80 4 133318862 133318880 AAATGGTTTGCCTGAGAGC 59 133318923 133319615 GCTGAAGAATCACTGTGTCC 59 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 3 2 2 81 16 20339611 20339630 CTGTTGGTCTTCAGCATCTC 59 20339670 20341735 CTTCCTGTTTATCATGGTACCTC 59 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 2 2 3 109 2 113833140 113833158 TAGTGCAGGACACAGAGAC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187 2 1 2 80 1 402126 403353 GAGAAACATTGGTTCCCTCC 59 403394 403414 TGGCTGTTTGTTTCTGATGAC 60 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000018440 1 1 2 80 15 52376430 52376448 GTCGTTGTGAGCCAATCAC 60 52375414 52376392 CTAGCTTCCTTACACTAGGATATCC 60 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 2 1 1 63 7 140467184 140467203 CTACGCTTCCTCATGAACCT 60 140467644 140467662 GCATCTCAGAGAACACGGT 60 NA DesignNoJunction Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000083303,ENSRNOT00000086232 2 2 2 80 8 114933135 114933153 GTTCTCTTCCTGCTTCGTG 59 114932430 114933094 TCAGAGTAAATTTCACAGCCTG 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 1 4 7 80 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517418 TTAAAGCCTGAGTCTGCAC 58 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000085265 1 1 3 80 14 86218584 86219916 GGCATTAAGGAATCTTCCGAC 59 86211885 86211905 CTTGATGATTTCCTGCTTCCG 60 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 2 3 3 80 7 63845459 63845480 ACCCTAGGATTGATGTTCAGAG 59 63845519 63851800 AAACAGTGTTCCCTTCTTAGC 59 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 3 3 3 81 7 63747924 63771620 TGGCCATTGACTTGATTGAC 59 63771662 63771682 TAGATGATTCGAATGTGCTGG 58 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324 3 1 3 81 17 59697973 59714650 TGTTCACAGTCAAATTTGCC 58 59714693 59714712 CTCGAGTCTTCCTTGTTTCC 58 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 2 2 2 105 2 198114380 198114398 AGGAGGACAGCTATCTTGC 59 198112898 198114311 GTAGAGGTGGAAGCCACAG 60 NA Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 2 2 2 80 1 84367069 84369898 TCTCAGTGACTATGGCCAC 59 84369942 84369960 CATAATTGACGGCAGGTCC 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000085022 3 1 2 103 8 49258273 49264833 AAACAGCAGTCTGGTAGTG 57 49258188 49258207 TTATCTGAGTCATCTGGGCT 58 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 1 2 2 80 12 17567032 17570926 GGGTCTGAGAATAATAGCTACCT 59 17566974 17566992 ACAGCAGTCTTCCTGACAC 60 NA Rattus norvegicus 81 Rn60_9_0114.1 ENSRNOG00000053896 ENSRNOT00000087537 2 1 1 93 9 12406762 12406784 TCCAAGATAGCTCTGATCATCAC 60 12409451 12409469 CCTGAGTAGCTGTCAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 2 2 7 80 17 57067670 57079369 GTTGTTCAAGATGAGGAGACTG 59 57082586 57082604 TCGGATCTGGTAAGTTGGC 60 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 3 2 2 60 5 90339019 90339037 TGAAACATGGCTCCAAGGT 60 90348629 90348648 GCATCCACTTCAGACAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 1 2 4 80 7 143124233 143124988 TCTGAAGAAGGATGTGGACTG 60 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555 1 1 2 81 1 88699817 88699838 GAAGCCTGGAAATCTTGAAGAC 60 88698769 88699775 GCTCCCTGACTCACTTAGC 60 NA Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 1 1 1 96 10 84032659 84032677 TGGAAAGCAGCATTTGCAG 60 84033664 84033682 CCTTGCTATAGGGAATGCG 58 NA DesignNoJunction Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000039354 2 1 2 147 19 25834679 25834697 TCCATCATTCAGCAGTCGA 59 25826953 25834568 CCTGTCGTTGTGAATGCTG 60 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994 3 1 2 80 19 25829177 25829195 CCTTCCTATGCCTGATTCC 57 25826959 25829134 GTTGTGAATGAAGGTGATGG 57 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921 2 1 2 86 13 103285273 103287721 GAATGAAGCAAAGGCAGGA 59 103287771 103287789 TTCAGCTGAAACCCAAAGG 58 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145 2 1 2 80 15 36934591 36937351 GGATCAAGAGGATTCTACTGG 57 36937392 36937411 ATAAGGAGTCTGAGGAGGTC 58 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 3 2 2 80 13 44504948 44507315 AGTTAGTAAGAGCAAGCAAGG 58 44508902 44508921 GACAGAAGGTCGTAAGATGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000078816 2 2 3 80 8 49014492 49014513 AGAGGAGATATCATTCGCTCAC 60 49010344 49014451 TCTTGGAGCGGTAAACCTC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000088037 2 1 6 110 15 36972746 36972764 GGAACTATACCTGGCCCAC 60 36950456 36972672 TGTTGTAACAACCACTGCG 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000028219,ENSRNOT00000088037 1 2 6 80 15 37013936 37013954 AGCCAAGGAGAAACTGGAG 59 37011904 37013897 CTCATTAGATCTTGCCTCATTAGC 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000058000 2 1 5 81 1 79704030 79704048 GGATTCTACACCCTACGCA 59 79702877 79703985 AAAGGGAGGTGTTCACCTG 60 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 1 1 1 60 1 221540537 221540555 CAGAAGCACACCAGTAAGG 58 221545232 221545251 TTTGTTTCTCCAAGGACTCG 58 NA DesignNoJunction Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000079417 1 1 3 110 15 61847330 61856478 CGACATCACCCTTACAGGA 59 61856552 61857676 ATTGTGTTTCCCTTCCCGT 60 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 1 2 2 88 10 105235581 105235600 GCAAGGCTGTTCATTTCCTC 60 105235651 105236676 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030324 1 1 2 81 1 219375809 219375828 CCCAACATCCTTTGATCCAG 59 219375872 219379077 CTGGAAACACCTAGTCCCA 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 1 3 3 107 20 27176418 27216222 GCAACATCGATACATTGAACTC 58 27216285 27216496 CCTTGATTATCCATTCCATCTCTG 59 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 1 2 2 80 3 48535867 48535888 GTCTTTGGAGTCACTACTTTGG 59 48519951 48535827 AGGGCTGTAAACTCTTGAGG 60 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000042781 1 1 2 80 19 28291655 28292277 TCTGTCTATGCACAAGAAGAC 58 28291595 28291614 CTGTTGAGGATTGTGGTCAG 59 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 2 2 2 64 1 173730181 173730200 CTATCACCTTGACTGCTTCG 59 173728571 173728589 AGAATTTGTCTCCCACGCA 60 NA DesignNoJunction Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 3 2 2 80 16 20800554 20800572 AGATGGAGCAGACGTACTG 59 20799309 20800510 AGGACTTGACAGCCTTGAG 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 1 2 3 82 3 57837674 57840096 ATTCCGATTTGGGACGAGG 60 57840142 57840160 TGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 1 2 2 81 12 11433879 11500483 ATCCGTCTGACAGTATTGTG 58 11501752 11501770 CAACAATCTTGGCAAAGGG 58 NA Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000057843 2 1 2 96 15 83708183 83708201 GAGACGATCTGAAACACGC 59 83708261 83710371 TCACATCTTGTCTGGACCA 58 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 2 2 2 80 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000022445 3 1 2 80 17 53697902 53697923 ATGGAGATGAGAAGACACTGAG 59 53694272 53697864 GGTCTAGTGTTTCACTTTCAGC 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000044145 1 1 2 87 1 88189752 88189772 CTCCAGACCTCTACATTCCAG 59 88189930 88190773 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371 1 1 3 80 1 150504412 150504432 CTCAGACAATGATGGAAAGGT 58 150504473 150505213 ACAAGGTCTATATGCCATGC 58 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855 1 1 2 108 3 123622764 123625234 ACTTCCATGCAAATGATCCC 59 123622675 123622693 TCTACTTGGCACAAGAGGA 58 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410 3 1 2 125 4 179305720 179339625 TGAAGGACTGCAGTAATGGA 59 179298019 179305633 GATCTTTGGCCCTAAACGTC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 3 2 2 82 1 88558195 88558297 CACCAGCGAATTCATGTAAGAG 60 88558134 88558155 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000088917 3 1 3 89 6 106159520 106162219 TACAGCAGTAAGGACTCCT 57 106162269 106162290 CTTCTTCAAATCTTCTCGAAGC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 1 2 8 155 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979764 1979782 AAGCTTGAGCTCGTAGTCC 60 NA InUTR Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496 3 1 2 80 5 142907150 142907168 GCTTTGGCATTGTCATGTG 58 142907208 142907392 CCTTGATTACATCTTGTCCAGAC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 1 3 3 88 1 88587167 88590624 GCTATCTGGAAGATGAAGAGG 58 88590672 88590692 CTTCTTGTGGTTGATGATCAC 57 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000076892 1 1 3 100 13 76994639 76994657 ATGCACTCCAAAGTAACGG 58 76994720 77000121 CAAGGCTGTTTCTTTGTCTG 58 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252,ENSRNOT00000071857 2 2 3 95 12 52362271 52364022 AAGATGAAGATGCAGCTGGA 60 52364080 52364098 GAACCCAGAGAACATGCCT 60 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 2 2 2 81 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886901 151886919 ATCCTGAAGCAGGTAAGCT 58 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 1 3 3 107 13 48801367 48804635 CTCTTCCAGTTCCCTTCTG 57 48804705 48804724 TTATGTCTTCTGCAGGTCTG 57 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000077730 3 1 2 80 7 73285403 73285422 GGACCCGAGAGTAAATTTGC 59 73285463 73289141 TTAACTTGCTCATTGTCGTGG 59 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190 1 1 2 81 7 73285780 73289135 GATGATCCAGACAATGAGCA 58 73289179 73289197 GGTTCCAGATGAAGCTGTG 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000056436 1 1 3 160 2 195876057 195887685 GAAGAGATTATTAAGGTGGACCC 59 195870857 195870875 TCTGCTTCTCGCTGATACC 59 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 3 2 2 80 4 129480479 129481524 CTGTATTCGAGCTGTACAACTG 59 129480420 129480440 AGGTGATGTAGTAGATGCCTC 59 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883 2 1 2 84 20 32087042 32090263 AGCAGCAGGAGATTATCCTG 59 32086977 32086996 GGAGATTCAAATCGCTGGTG 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298 2 1 3 80 12 25523611 25526216 TAATGCACAAGGAAGCCAG 58 25523549 25523569 TTCACTTTCTAACCTGCAGAC 58 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 2 2 2 82 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505866 80505885 AGGGATGTGGTCTAGATGTG 59 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 3 3 3 80 1 149151523 149151543 GTGCAACAAGAAGATACATGG 58 149150751 149151483 TTTCAGGAAAGAGACCATCTG 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095 1 1 2 80 6 108021914 108026762 CGGTGATAAGTCAGATCAAGG 58 108029790 108029809 CTCCTGTCATCATGGATTGG 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095 3 1 2 81 6 108021917 108026768 TGATAAGTCAGATCAAGGAGACTG 60 108029795 108029813 TTGCCTCCTGTCATCATGG 60 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 2 1 1 62 1 22431437 22431455 AGAGATCTGCTCTCAGCCT 60 22431391 22431409 GTATGGGCTCCTGACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000002645 1 1 2 106 11 77474826 77474844 GAGTTTGTGCTGCTGACAC 60 77472109 77474758 GTCTCATCTGTGACAATTCCC 59 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360 3 1 2 129 5 151104430 151107181 GCAGTCATTACAACAGCCAG 60 151095867 151095885 GAATCCAGAGCCAGGTCTG 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083 1 2 4 80 1 189393394 189393415 ACAGCTTATCAAAGAGCTACAG 58 189393456 189394992 GAAACAAACTCCACCTTCCT 58 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 2 2 3 141 15 11874675 11878820 ACTGACTTCACTCCAGGGA 60 11872507 11874573 TCATGTCAACCTTGCTAAAGTC 59 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 3 3 3 81 18 60699945 60702686 ACATGGAGTCTGTGGACAG 59 60702730 60702749 AACATGAGGTCAAGTTCCGT 60 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624 2 2 3 80 18 60578294 60639870 ACAGATTGACACGAGACGA 59 60651432 60651452 TCTCCATGGTTGGATCTTCTG 60 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000067866 2 1 2 113 10 46614664 46614682 AAACTCCTTGGCTGAACAG 58 46613291 46613755 CCATACATTTCCATTTCTGAGC 58 NA Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 3 2 2 80 5 161823512 161827983 AACCTTAAAGCCAATCGCG 59 161823450 161823468 ATCGCAGCTGCTATCTCAG 60 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 1 2 2 88 17 31495006 31497411 CTTTGTGTTCGGTCAGAGTG 59 31497462 31497480 CATCCAGGACAGAGTCCAC 60 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000089222 2 1 2 89 2 243464071 243469413 ACATCCAAGGTTTGAACAACG 60 243464002 243464020 AAGGACTTAACTGGCGAGG 59 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000005325 1 1 2 80 10 67478824 67478847 CTAACTTAATTTCCCTCGTAGGG 59 67478766 67478789 TATTATGTAGGACTGGAGACATGG 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687 3 1 2 103 15 12876818 12876837 CGGAGATGCTTTCTCTTGAG 59 12872628 12873119 CTGAAACTGGTACATAAGTGCT 59 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 1 2 2 80 18 56639043 56639756 CTTGTGTCAAGGTGGATGG 59 56638981 56639000 TATGCAGTTCTGTACAAGGC 58 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169 3 1 2 85 14 115391891 115391911 CCTAGTGAGACTAGGAAGAGG 58 115391956 115396012 TTGATCAGTGTGCTAACTGTG 59 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 3 2 2 80 5 135413327 135415567 CAGCTAAGTCATCTACAGCCA 60 135415606 135415627 GACGGCTTATTCCAAATCTACC 59 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558 1 2 3 96 8 68132727 68154060 CTCTTTCATGGAGCTTGCTC 59 68113820 68113838 AACAATGCACTGCAGAAGC 60 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000050372 2 1 2 80 6 66984370 66984389 AATGTTGCCAAGACAGAACC 59 66977296 66984328 TGGCAATGTTTGTTTGATGC 59 NA Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 1 2 2 80 13 90820851 90822272 TACAGCTGGACAAGTTCCC 59 90820789 90820807 CCAAGGCATCCTCATTTCC 59 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 1 2 2 80 10 94364718 94364738 CTCCAAACCAGAGATCATGAG 58 94364363 94364677 TCAAACCCTTTGCCTATGAC 58 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000017252 3 1 3 80 2 243739959 243739980 AATTTGTGACTGGCAATCTGTC 60 243740020 243740646 CAGTTCGAATGCTGTTTCCC 60 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147 2 1 2 83 8 71900178 71914858 TCACTTTGATCTCAAGCCAG 58 71914904 71914922 AAGCCAAAGTCAATCAGCT 58 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 1 2 2 124 14 86479835 86613016 AAGCCTGTCTGGTATGCTG 60 86613103 86613122 AATTTCTTGAAGGCGTCCAG 59 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 3 2 2 125 14 86479834 86479956 TAAGCCTGTCTGGTATGCTG 60 86480043 86480062 AATTTCTTGAAGGCGTCCAG 59 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 3 2 2 98 20 7870080 7870098 GAGAAAGAGGAAGTGGCCA 59 7870160 7877727 ATTCTGGGAGAGGTCTGTG 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000079000 2 1 3 82 15 12578032 12578052 CATACCTGTCATCCTGTTGTG 59 12578095 12578671 ATGACTTCGTCCTTCCTGAG 59 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 1 2 2 80 8 71662950 71662969 ATAACTCGAGAAAGCCACAC 58 71663010 71677978 TGCTGTTAAAGATCTTGGCTG 59 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000042369,ENSRNOT00000090096 2 2 2 81 8 71662949 71662969 AATAACTCGAGAAAGCCACAC 59 71663010 71677978 TGCTGTTAAAGATCTTGGCTG 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000085929 1 1 2 80 5 163214930 163214948 GTTGTCTCCTACACAGCCA 59 163214865 163214889 CTGTCTTCGTTTGTAGTAGTCAG 59 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 2 2 2 80 7 137982436 137983663 ACCTTCAACTCAAAGACGG 58 137982374 137982392 GTAGATTGGCAGGACAGAC 58 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 3 2 2 83 5 155666654 155666672 GATCTGGAGAAGTGTGGCT 59 155666806 155666824 GATGTTGTCCGAGCATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000046388,ENSRNOT00000086036 2 3 3 80 10 65588101 65588122 TACCAGAAAGATGACAATGGTG 59 65588163 65588277 CTTGTCAACCTTGATGCCT 58 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163 1 1 2 80 3 3414750 3433543 ATGGCCTAGACAACATCCC 59 3414688 3414706 CAGGTGGCTTAATGTGCTC 59 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000075569 3 1 2 93 2 195678388 195678406 GAACAGGAGGACCTGACTC 59 195678311 195678332 AGTCCTTCTAGGGACTCGAG 60 NA Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 1 1 1 60 3 44806549 44806569 AATAGAACCATGAGACCTGAC 57 44814655 44814674 TCCTAACATACACAGACCGT 58 NA DesignNoJunction Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 2 1 1 60 3 44806557 44806577 CATGAGACCTGACAAGAATCC 59 44814660 44814682 GTGTGGATTCCTAACATACACAG 59 NA DesignNoJunction Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000049297 3 1 3 100 3 2528973 2528991 GGAACCACATCATCCTGCT 60 2526084 2528909 CTTCTCTGCCTTGGACTCC 60 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627 1 1 2 80 19 26195323 26195342 TGCTCCTTTATCAGCTTTGC 59 26195384 26195475 GGAGATTGAGAGCATGAAGC 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000057718 2 1 4 117 X 71963094 71963407 GAGTTTGTATTGATGCCTGCA 59 71963486 71963504 TCCAGGCAATTTGCTTGTC 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371 3 1 2 80 4 82816855 82816875 CTACAGTTGGCAGAGAAAGAC 59 82816914 82820399 TGTAAGTTCCTTCTCCCTTGAG 60 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000077544 1 1 2 80 1 245926449 245930765 TAGGAGATTAGGCACTAGAGGA 59 245926390 245926411 AGACGGTTAAGAGGAGAATCTG 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 2 4 4 81 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238104 122238123 CAATCAGCTCTGTCTTGGTG 59 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 2 2 2 80 X 124338914 124424513 TTAAGGATATGAACCCTACTCGTC 60 124338857 124338877 GACGCGCATAGTAAGAAACAG 60 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 3 2 2 80 7 143163542 143163561 CAAGGCTCAGTATGATGACG 59 143163283 143163500 TTCATCTCCTCACACTTGGT 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 3 2 3 80 4 33640509 33640527 GGATTAATGGGCAAACGGG 59 33641008 33641503 CTGACCATGCCCATAAAGAG 59 NA Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 2 1 1 60 4 179481271 179481292 TTCTTTACGAGGAGAAGTACTG 57 179481391 179481411 ATAGTCCCGTCCAAGATACAG 59 NA DesignNoJunction Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 3 1 1 61 4 179481268 179481292 CAATTCTTTACGAGGAGAAGTACTG 60 179481391 179481409 AGTCCCGTCCAAGATACAG 59 NA DesignNoJunction Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 3 3 3 80 15 24161530 24164290 ACGCAAACAGTATCACTCTG 58 24164332 24164351 TGTTGTTCTCATTGAAGCGG 59 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 3 2 2 80 3 3541059 3541078 CCTACGATACCATGGTGGAG 60 3517149 3541016 CTGGTTTCTCTTGCACTGC 60 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 3 2 2 80 1 162870084 162871749 GTGAACTATCTGGACAGTTACCT 60 162871789 162871807 ATCTGTTAAGGAGCCTCCG 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000051754 2 1 2 147 7 117470967 117470985 GCCTCTACAAGAAGCATGC 59 117471560 117472112 GATCCCTGGCCTTTCTGAG 60 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174 2 1 2 80 3 60748461 60748479 ACAAGCAGTACCTTCACCA 59 60747730 60748418 CCTGGTACAGGAACAATTGG 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669 1 1 2 80 2 226706305 226707588 GGAAAGAAGCCAAAGCCAC 60 226706243 226706262 AAACTGGGACCCATTAGGAG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000090273 2 1 2 80 20 20431595 20444193 ATCCCTAGCCTTACGTCCA 60 20444237 20444255 CTAAGTCCCAGGTGATCGG 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688 1 1 2 80 4 76837741 76837760 CCTGCATCCTCCTCTATGTC 60 76837802 76851955 GGATCTGCAAGTTTCCTGTG 59 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 3 1 1 60 1 228145642 228145660 CTGAAGCCACTGACTTCAC 59 228146785 228146804 AGATAACCACCTCCAAGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 3 2 2 81 10 43751524 43751542 GATCTTTCCGCACTAGCAG 58 43751586 43751714 CCACATATCTCACACTGCAG 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033 2 1 2 80 7 143690080 143690549 TCAAGCACAGGATAAAGACAG 58 143690590 143690609 CAGTCTGTGTCTGTCTTGTC 58 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 3 4 6 116 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965718 33965737 AGATTCAGGACAGTGATGCC 60 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56395290 56395308 TCATGAGTCATCTCGGACC 59 56395350 56397827 TGATAATGTAGATGGGCCCTC 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000015828 3 1 2 99 4 81249095 81249113 AGCCTGAAGAATTTGTGGT 57 81249175 81252243 TTATCAGCATCTGTGAACCC 58 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171 2 1 2 80 3 11322333 11325956 TTAGACAAGAGGAAGGTGCC 60 11325997 11326017 GACACCAAGAAACATAGTGGC 60 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 1 3 3 80 20 3149123 3149142 CTCTGCAATTGTCCTCTGTG 59 3149185 3149692 TGCCTTCCTCTTTCACCTG 60 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000066455 3 1 2 157 1 219861471 219862092 CTTCTTGTCTGCAGGACAC 59 219861332 219861350 GAAGCAGAAGCAGGAAGAG 58 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484 1 1 2 103 3 94636352 94636370 ATCAGCTAGGCATGTAGGC 59 94634596 94636285 CAAAGTCCAGGGAGTTTGG 58 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 3 2 3 84 20 3291928 3295546 ATCGGCTGTGTAGGTTTCC 60 3291862 3291880 TTCTGGAGACACTCACCAC 59 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 1 2 3 80 20 3297993 3298112 GCACAATTTGGAGACATGGA 59 3297932 3297951 TGTCGGATGTCCGTAATGAG 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251,ENSRNOT00000014065 2 2 2 80 8 5994194 5994413 CTGTAACGGTTTCAGCAACC 60 5994454 5994474 CTATACCACCAACAAAGCTGC 60 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000028570 1 1 2 80 1 101724669 101741340 TCCGAACTTAGCCAGAAGC 60 101724607 101724626 CTCTGGTGTATACATGCCGA 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 3 2 2 80 11 74765352 74769571 CAGGAAGCTCAAGAAATCTCTG 59 74765293 74765315 GTATTGTAGCTGGCATCATAGTC 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000024162 2 1 6 80 17 77185075 77185093 CATCGTCTCAGAACTGCAG 58 77185135 77189001 TCCTTCCTGTAACTGATCTCC 59 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000091978 1 1 2 82 10 85994739 85994758 GTAAGACATGCAAGGTCAGC 59 85994527 85994694 AGATGTGGATGTCTTGCCC 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 2 2 2 80 6 115582512 115582532 TATAACCTAGCACAGATGCAC 58 115581640 115582472 CACGTTCTTAAACAACTCCAC 58 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 1 2 2 91 15 20777229 20778251 ATCACGAAGAACATCTGGAG 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152 3 1 2 83 4 81238590 81238608 GTGGAGGACCTGGATATGG 59 81238324 81238546 TTCCACTTCCATAATTTCCTCC 58 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 2 2 2 82 1 87167611 87167852 GCTTGTCACAGCATACCTC 59 87167547 87167565 CATGGAGGTCAGAAACACG 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000087118 3 1 2 83 10 10861039 10881764 GAAGTCCGGAAACTACTTTGC 60 10860976 10860996 CCAAAGAGGTAACCTTCAGGA 60 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453 3 1 3 108 1 80616815 80616834 CCTTGTTAGGAGGCTTCTCC 60 80614841 80616744 GTTGTGATTGGCCAGTCAC 60 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000025415 2 1 4 80 1 154425446 154425466 CCAACCTTTCATCCATCTGTC 59 154425507 154439761 CGGAGAAGGACTGAATCCTC 60 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601 1 1 2 116 1 53186116 53186134 AATGGGATAAACACGGCAC 59 53186211 53189004 TTTGTAGTACACTGTTGAGGTC 58 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 2 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837426 3837448 TCTTCCCTATGTTCTCTACAGGA 60 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 3 2 2 80 4 121649212 121649231 CAATGAAATGTGGGCTTACG 58 121649272 121649808 TGGTTGTAAATACCTCACCAC 58 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000078746 1 1 2 80 14 18838970 18838990 CAAGAAGTTTGTCTCAACCCT 59 18838422 18838928 TCAGCTGGACTTGTCACTC 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 1 4 4 80 2 92576355 92577316 CCATGAGGGCATTATAGATTCAC 59 92577354 92577374 TGTGGTGGATTAAGAGATGGT 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 2 4 4 80 2 92587147 92592337 AGGTCCTCCAGAGAAATGTG 59 92592379 92592398 TTCTTTGCAGGTCGTAATGG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000065774 3 1 4 129 2 92607378 92607397 TTATGTCGACAGTAAGCTGC 58 92608728 92621443 TAAAGTTTGCCTGAGGCTC 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279 2 1 2 84 4 99504709 99504729 AACCACGAAGATAAACTGCAG 59 99503778 99503797 CTGGATTCACGGCTTTCAG 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 1 1 1 96 6 98605992 98606010 AAACCCTGAGGTCAGACTC 59 98601623 98601643 ACTGGTCCTTAATCTTCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000046798 1 1 5 85 20 3410698 3410716 AGCCTTATACTACCTGCCC 58 3410630 3410649 AGAGGACCTATTTGCCCTG 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494 2 1 2 80 3 97383583 97383602 TCTTCCTAAGGAGCCTTGAG 59 97383644 97385301 GACTGTAGAACACTTCCACC 58 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000089750 3 1 2 84 18 44888803 44891046 CTGCTAATGCCATTGACCT 58 44891094 44891112 ATTGTGATGGTCGTGTCAG 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000083429 2 1 10 90 7 117253869 117264769 AGCCACAGATGAACGAGAC 60 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 3 4 4 80 7 142048708 142050535 GATTCCAGACGATGGTGCT 60 142048646 142048665 GAAGAGTTGCTGTAAGCAGG 59 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005 1 1 2 80 13 101039154 101039174 AATGGACCATAACCATGTAGG 58 101039216 101039768 TTGTTGAGGGTGAAACCTG 58 NA Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 1 2 2 88 17 80658446 80658464 TTTGGATCTTAGAGGCGCC 60 80653567 80658394 CACAGAACAGTTGGGTGTG 59 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000083419 1 1 2 130 8 53736801 53739332 GACACCACTCAAGGATGCT 60 53739426 53739444 GATCAGGGAGAGTGAGCTG 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 2 4 5 81 9 43834351 43834369 AGGAAGTATCCAGCCAGGA 60 43834414 43844719 TTCTTCCTGCCTTTCCCTC 59 NA Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 3 2 2 81 1 101217210 101218539 AAGCTGAAGGACCAAGTCTC 60 101218583 101218601 AAGGTGCAGAGATGAGCTG 60 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000078500 1 1 2 80 1 143676118 143676136 TTTGTGCTCTCCCTCTCAG 59 143676179 143679888 AACAATGGTCCAGGAATCGT 60 NA Rattus norvegicus 81 Zpbp2 ENSRNOG00000007255 ENSRNOT00000048647,ENSRNOT00000009535 3 2 2 83 10 86518429 86519330 CGTAGCCTTTCAAGTGAATCC 59 86519375 86519393 TGATTGGTGACGTCCTCAC 60 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 3 2 3 81 18 63016855 63029319 CGGGACAAATCATCAGAAAGG 59 63029360 63029380 GTTTCTGTCACAAGATCTGCA 59 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000013331 1 1 2 80 15 23576509 23576530 TAGCATTTGATGAGCTGAAGAC 59 23572673 23576468 ACTCTGGAAGCACAAGAGG 59 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000018293 2 1 2 80 9 74018367 74019181 TCTCTTTGAAGGGATGGCT 58 74018305 74018323 TCAAATGCAGGGAACTTGG 58 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699 3 1 3 86 1 3879193 3886255 CCAGTGATCTAGCAAAGATGTC 59 3872207 3872228 TGCTGAAGGAATTGTCTTTCAC 60 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017 2 1 2 80 20 13060821 13060840 GTGACATCACTCAGAAAGGA 57 13060883 13067239 GGTCCACTCCTTGAATGAG 58 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312 1 1 2 81 2 84523008 84523026 TTGTCTGCATTGGATCCAG 58 84520586 84522965 TTCTAGATTCTGACGTGTCTC 57 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657 2 1 2 80 19 55211039 55211060 GTTGTGACACCATTATCCACTC 59 55211100 55221874 CGTGCAGTTTCCTTTAACCT 59 NA Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 1 2 2 80 1 78077486 78078071 AGTCTAATCGTACAGGGCAG 59 78078113 78078132 CATGTGGTTGAGTCTCTGTG 59 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 1 3 7 80 9 43625916 43625934 TTGAGCCAATGGTTGTGAG 58 43625977 43632705 AAATGGCTTCAATGGTTTCG 58 NA Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 3 2 2 82 9 80154621 80155297 TCTACAAGAGAAAGCAGTGCA 60 80154559 80154579 CAGCTTCATCCCATACTTGTC 59 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 1 1 1 60 15 28415130 28415148 GCAGTACCAGGAGCTACAG 60 28415495 28415515 ATTCTCCAAACCAGAAACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682 3 1 2 80 14 19399583 19399603 CAAAGAGGTCAATCAGTTTCC 57 19399642 19405271 CTTTCTTCCCTTAACTTGTCAG 57 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000077857 1 1 2 111 13 48821810 48821829 TTACAGTTTCCTCGTCTGTG 58 48820088 48821738 TTGGGTAAGAACTGATGAGAG 57 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000043851 3 1 4 80 4 85694884 85703850 TCCAGCATCTACTTACGGC 59 85703892 85703912 GAAGGCGAATACTGTGTAGTG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000078658 2 1 6 148 20 3301107 3305334 CTGGTGATCCCAAGTCAGG 60 3305442 3306023 GTCAGATTTGTCTTCCATCATCG 60 NA InUTR Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 3 1 1 75 3 61591087 61591105 TGTATTGTGCCAAGGACCA 59 61591978 61591996 TGGTTTAAAGCCACATCCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 1 2 2 80 1 257942714 257943249 ATGACAGTGATTGGAATCCTC 58 257943291 257943309 CAACAACTGGCTTTGTCTG 58 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 2 1 2 60 3 55466624 55466644 ACCAATGTCTTCCTCTTCCTG 60 55466721 55466740 TACCAAGCAGTCTGAGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 3 2 2 80 1 69817784 69818573 TCAACAGGGTGTTGTTCAG 58 69818617 69818635 ATGAAGCCATAAAGGGCTG 58 NA Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 1 1 1 60 15 30750117 30750137 CTTGTGCTCCTCCTAATACTC 58 30751602 30751620 CTGTCTGGGTCACTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 2 1 1 60 15 30750115 30750137 TTCTTGTGCTCCTCCTAATACTC 60 30751600 30751618 GTCTGGGTCACTGAGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 1 2 2 80 2 183157305 183157323 TTGCAGCTGTGAATAGCAG 59 183152005 183157267 CTCCTTCCTGATTAAATACCTTGAC 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000080478 1 1 2 80 18 76710806 76710920 TCCTCACGAAGAACACTGAG 60 76710241 76710260 TGAGAAGTCTGGAGTCACAG 59 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960 2 1 2 82 7 124171693 124171713 TAAGAGAAGGCAGAAGGCA 58 124162769 124162787 GATCCTTGTAGGCCAATCG 58 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000085647 1 1 3 80 3 117435005 117435551 ATATGTCAGAGGAGGTCTTGG 59 117435593 117435611 GCAGAAGTTGACAACCCAG 59 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 3 2 2 80 19 55403429 55404126 CACATCATAGACAGGCCCA 59 55403367 55403385 GAGGTGTGCTTTGTACTGG 59 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633 2 1 2 81 11 71005259 71104342 GAGCATTGTGAAGCTCCAG 59 71104387 71104405 ATTGGTATCAGGACTGGCA 58 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 2 2 2 80 18 86365386 86383889 TCATAACTGATGGTGGAACC 57 86383930 86383950 TTAGGATGACAAGTAGCAGTG 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95203514 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 4 6 81 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566951 3566969 GCTCTGCCTGAAATCATCC 59 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000025070 1 1 2 105 4 118871039 118874567 TGTACAGAACAGGCAAAGAC 58 118874633 118874653 GCAAAGTAATATTCAACCGCC 58 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 3 2 2 60 10 47340653 47340671 GATGAGGTGGCTACAGACC 60 47340695 47340713 GCCTGTCAAAGTCATGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 3 2 2 106 10 47767079 47767099 ATGTTGACTTCTCCATCTCCC 60 47767166 47767554 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000041514 2 1 5 80 14 22215242 22215261 GAACATGAACACGATGACGA 59 22215303 22215915 GCATGAGTGGAGCTTAATGG 59 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 3 2 2 83 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827603 8827621 CAGAACATTGTTGCCCAGG 59 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 1 2 2 80 17 82010514 82010535 AACGCTCAGTATTAAACAACCC 59 82010575 82013479 TCTGAACTTCCGCTAAGCTC 60 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000029600 1 1 2 80 3 13245492 13246297 AGTCACAGGTGGATACCCT 60 13245430 13245449 TGTACAGTGAGTTTGCTCCA 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000018556 3 1 2 92 1 16109258 16109278 GAGAATCCTGAGCAGAATGTC 59 15974754 16100587 TAGTCGTACATCTCCTTGGC 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689 1 1 2 80 3 100366249 100366267 TGGGTTTGAATTTGTGGCT 58 100366308 100374999 ATGCAAATACTAGAAGTGACCG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172 1 1 3 81 14 21068328 21072132 CAGCTGGAGCAAAGATTGC 60 21068265 21068284 CGAAGTCCTGTTTGAAGAGC 59 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000013605 3 1 2 143 3 119024733 119024756 AGGAGGTTCTTCCCAAAGG 59 119024866 119024884 TGAACGTGACTTCAGACCT 59 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000064138 1 1 2 217 1 215135699 215135717 GTCTGTTCCTGCTCTAGCT 59 215143862 215143880 CAACCTGAAGAGCAACAGG 59 NA DesignNoJunction Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000038780 1 1 4 80 7 28468813 28468831 TGAAGCCTACAAAGTCAGC 58 28468873 28485477 TCAAGTGTACTTCCTTCTGAG 57 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000046391 2 1 2 80 3 113126804 113126828 TATGGTTTCCTCCATTCCCT 58 113126743 113126761 ACCACTCTTGACCTTCCTG 59 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 3 2 2 89 11 70539759 70540971 GTCTTCATCCATACAGGCGA 60 70539689 70539707 CTTCTCGTGTCTCTGGAGC 60 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 2 2 2 80 4 34602701 34610182 GATCGTGATAAAGACAGTGGG 59 34610222 34610242 GAACATGTAGCTGTTGTTTGG 58 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622 3 1 2 90 12 41282871 41282889 AGGACTCTGAGCATCAAGC 60 41282938 41284812 TTAGCTCATACAGGACATCATAGG 60 NA Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 1 2 2 80 18 69743027 69743048 TGTGGCTTTAGCTGTTATTCTC 59 69742164 69742986 GATGTCAGTGCCTTTGCAG 60 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 2 2 2 80 7 71136414 71138334 GAGTTGGGAACAGAGGACTC 60 71136353 71136373 TTCTCATCCACTCATTGGGAC 60 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 3 1 1 96 4 100481918 100481937 TTGCTTACCACAACAAACGA 59 100480789 100480807 AAACGTTGGTAGTCACTGG 58 NA DesignNoJunction Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000008659 1 1 2 86 10 86870925 86876157 AAACCACTCCATCGAGACC 59 86876207 86876225 TTGTAGATTCGAGGCAGGG 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000040759 2 1 4 84 16 6189095 6189349 ATGTCAGACCCTACACAACC 60 6189030 6189048 GTGACAGACTTCACAGCTG 59 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 3 1 1 72 4 10797275 10797293 GATATGCCAAAGTCACCCT 57 10802845 10802865 TTCGAGGTAGATACTGAAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109 1 1 2 80 10 47529371 47529389 TTCAACAAAGGAAGGCTGC 59 47526898 47529327 TCACAGCTGATCCTTGACG 60 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000084860 1 1 2 80 2 244304781 244330130 TATGATAGCCATGAGGGCAG 59 244304720 244304738 GCACAGCGACCTTAAATGG 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000077092,ENSRNOT00000001098,ENSRNOT00000090039 2 4 6 80 20 3429879 3429900 GAAGTACTGGACATCTTAAGCC 59 3428151 3429838 GTTGTGATTCACCTGGGAG 58 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797 3 1 3 94 18 65172794 65285332 GGGCTCAAATGTAGAAGACAG 59 65288767 65288785 CATAGGGAGTCCCATCTCC 58 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 1 2 4 80 1 102824432 102824453 GAGAAAGAAATCCATCAACCTC 57 102824086 102824392 TAACTTGGTCACTGCTTCTG 58 NA Rattus norvegicus 81 Sh2b1 ENSRNOG00000049181 ENSRNOT00000074274,ENSRNOT00000071241 1 2 2 80 1 197883673 197883692 ACTATTACTGATGTCCGCAC 58 197883410 197883630 AGGGCCTTCTACCTTAACC 58 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932 3 1 2 80 13 82757494 82757515 AGCTGGAAGAAATTCATCTGGA 60 82753354 82757458 CAGAAGGATCTTAAACCAACTACC 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000075671 1 1 3 80 12 11062641 11062662 ATTCCATCTTATGCTCTTCACC 58 11061175 11062601 CTCCTTGCTGAACCTTTCTG 59 NA Rattus norvegicus 81 Cyp3a23/3a1 ENSRNOG00000047745 ENSRNOT00000071669,ENSRNOT00000085436 3 2 3 80 12 10781289 10785601 ATTCTAAGCATAAGCACCGAG 58 10781229 10781249 TATGAGACACTTCGTCTTTGG 58 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 1 2 3 80 7 28741998 28742018 TTTGCAACCACTGGATATCCT 60 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000036273 3 1 2 81 3 136767452 136767470 GCTTGTCTATGACCGACCT 59 136745764 136767409 CTCTCAAATTCAAGTCCAGGG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 2 2 4 80 1 200671085 200672157 GTGAATGTCACAGATGCCA 58 200671023 200671043 CCTGTTCTCACTGACAAAGTC 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000017927 2 2 3 81 4 100292169 100292188 AAATAGCCCTTTGCATGAGC 59 100292232 100292534 TCGAGTCATCAGGAAGCTG 59 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 1 1 1 108 15 31642256 31642274 ATCAGAAATGCAGTGCCTG 59 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090,ENSRNOT00000085684 1 2 2 163 7 40223521 40223703 AGAATGAACAGCTTCGTCAG 58 40223826 40224583 TGTTAAGGTCTGTATTTCGTCC 58 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083 2 1 4 81 2 208569518 208569536 CAATCAACAGGGAGAAGGC 59 208567486 208569474 AGGGCAATGTTATTCCTCTG 58 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 2 2 2 100 7 121151327 121151345 GTGAAGTGGAAAGGATGGC 59 121141742 121144278 TTCTCCTCCTTCTCCTCGT 59 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228 3 1 2 140 10 47724291 47724554 AGATCTCGGAGAGCAAACG 60 47723427 47723445 TTTCCAGACAGATGGAGCA 59 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 2 2 2 80 15 4080049 4082267 CAGCTCAATGGATCACTTCC 59 4082310 4082328 CCATAGGAGAAGCCCTGAC 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 1 2 2 80 1 56289285 56299798 GAACTGCAAAGATGTGTCCA 59 56299841 56299859 AACACTTGCTGGAACTCCT 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 2 2 2 80 1 56339167 56345996 CTCCACAAGGTATGAGCAG 58 56346040 56346058 CTGTTCTTGTACAGGTCCC 58 NA Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 2 1 1 68 19 56306600 56306618 CATCCCAATACCAGCACCA 60 56305946 56305964 GAGGAGACACTGCTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000048252 2 1 2 99 4 56169255 56169274 CACAGATGCTGTGACAGTG 59 56169339 56169357 AAACTGCAGAGTGACATGG 58 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 3 2 2 80 9 74234374 74235275 CACCAATTTCCAGGTGACC 59 74235317 74235337 TAGTGGAACAGACTCTTGGAG 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850 2 1 3 80 X 72391663 72394384 GAGAGTCAGACTAGTGGTGG 59 72386525 72386543 AGAAATACAGGCTGCAGGG 60 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 2 2 2 80 3 148169779 148169797 TGACACTAAGGACCTGGTG 59 148169841 148169950 TTGGCAATCCAATGCTTCC 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000010251 1 1 2 81 3 148181322 148181340 ACTGGTCAAGGGAGAAGTG 59 148185628 148189426 TTGAGACAACAGAATGGCTG 59 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 2 3 3 80 10 109712028 109712145 CTGTCATGTCTGCCAAAGG 59 109712188 109712207 GCACTGGTCACTATAGAGCT 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949,ENSRNOT00000080562 2 2 5 80 11 81426444 81426463 TGCTAACGTGTACATGAGAC 58 81424322 81426404 ATCACAGAAATCATGTCTAGCG 59 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 3 2 2 80 1 147808345 147808363 GAGACAACAAGCACAACAC 58 147808406 147884088 CTCTTCCTGGACTTTAGCTG 58 NA Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 2 2 2 80 1 90512426 90517106 TGACTCCAGAATAAGCCGTC 60 90512365 90512386 CGGTCGATGAAATAATGTTGCT 60 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000033916 2 1 2 83 16 24582852 24582871 CATAACTTTCCACTGCCACC 59 24582783 24582802 AAGAACAGGATGGGAGGTC 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 2 3 8 81 6 128053949 128053968 TAAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000077517,ENSRNOT00000014073 1 3 8 95 6 128075900 128077744 CTTTAAAGGCAAATGGAAGGTG 59 128077800 128077818 ATCATGGGCACTTTCACAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680 2 1 8 80 6 127946750 128075354 CAGATGGCACACTAGGAGAG 60 128075397 128075415 AGGCCAATGTGAGACTGTC 60 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 1 2 2 80 2 188562604 188564538 AATCTTCCCTGAGATTCTCCT 58 188564580 188564598 CAAGTGGTGACACAGACTC 58 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192 1 1 2 80 9 96960210 96960229 AAAGCATGGAAACTAAACCG 57 96960272 96970467 TTCTTCTTGCTCTTCGGTG 58 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 3 2 2 80 15 57169086 57169104 ACCCTTACCTCCAAAGCTC 59 57166027 57169042 GGTTCTCTAGCAGAGCCTG 60 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365 2 1 2 80 1 197155910 197165122 GATGGCACCAGAAATCTGTG 59 197165163 197165183 CTTCTGAACAGTCCAGAGGAG 60 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000042606 3 1 2 82 15 61886543 61887571 GAGATTCAGAATGTTAAGGGTTCTC 60 61887608 61887629 AAGTACTGAACCAGCTCTACAG 60 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 2 2 2 80 2 196157732 196158563 ATTCCAAGGATAAGGCTCCC 59 196158605 196158624 GGGCAGGAACATTAGTTGTG 59 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000091015 2 1 2 131 13 53149092 53149110 CTCATTGCTGTTTGGCTGG 60 53148267 53148594 AGAAAGATTCTCTGAACTGGCA 60 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 2 2 2 80 1 218719385 218725552 CAGATCTAGTTACAACCTGCC 58 218719325 218719343 AATCCTGTGAGAAACCCGT 59 NA Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 2 1 1 82 9 98113382 98113400 CTAAGCTTGGTCCTCCCAG 60 98114096 98114115 CAGGCAGGATTGATATCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 3 1 1 60 3 165692604 165692623 CGCCACTTAAGAATCCACAC 59 165685404 165685423 AGCATTTGTCACAGAACTCG 59 NA DesignNoJunction Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802 2 1 2 80 3 116952612 116954358 ACTGATACTATATCAGGTGTACGG 59 116954395 116954415 GGTGATGAGGACATTCATGTG 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 3 2 2 165 4 56406869 56411704 GTGTAGAGTGATGCGAGAC 58 56406433 56406742 CTCCACTATTGGTCTCTTCTG 58 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087957 2 1 4 80 1 64009838 64010152 TAGTCTCAGGACCCATCAG 58 64011144 64011162 CCTTCAGGTACCTTTGCAG 58 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669 1 1 4 80 1 64009742 64009760 GTGTGACATCCAAGCTCTC 58 64009804 64011174 CTCCAATCAGAGCCTTCAG 58 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512 2 1 3 85 13 49398901 49402568 AAGTCCTCACCAACAACCC 60 49391814 49391832 TGTTCTTTCCGCAACTCCT 60 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 1 2 2 80 9 81832635 81835246 ACAATATGCCTTCCAGTCGT 60 81835289 81835307 ATGGTCTTCTGCTGTTCCC 60 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 1 4 4 94 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503412 105503430 GATTCATGGGTGACAGCTG 59 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000067536 3 1 2 82 15 34456420 34456438 GTATTACTGTCGCCTGGAC 58 34456332 34456377 GGAGTACATTCTCCATTGTCTC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000081649 2 1 2 81 10 72417054 72472480 CCTTGGGAGTTTGAAGTTACAG 59 72416994 72417015 TGTAATATGAGAGTCCACAGGT 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669 2 1 2 80 17 90717304 90717871 CATTAAAGGAGGAATTCCGGT 58 90717244 90717263 ACAATCTGCATTTATCGCAC 57 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 2 2 2 80 4 88862989 88864463 AGATTCCAAGGTTGGAACTC 58 88864506 88864524 ATGAGCTCCATTCCTATGC 57 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943 1 1 2 136 12 23606530 23606648 CCAGCATCAGAACGTACCA 60 23606412 23606430 GAAGTAGTGTGCGACTGGT 60 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 1 2 2 80 6 28337055 28338244 GGCAGAATAGCCAAGTTCAG 59 28338287 28338305 GAAATGCTGGTCTTTGCCC 60 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000089783 2 1 2 83 19 38091350 38100646 GGATATCACTTTAGATGATGACCAG 59 38100684 38100705 CTGTGATTAGGCCATTTCTCTG 59 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 1 2 2 80 10 88466149 88467734 GGATGAAGATCTCATCAAAGGC 59 88467773 88467793 TCCAGGTAGTTGATTCCAGTC 59 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000080773 1 1 2 87 20 32077131 32077850 CAGTGGGAGACCAAATGAC 58 32076232 32076250 TTCTGAATTTCTTGCCGCT 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 3 2 3 80 6 28518458 28521604 ACTATGGAGTCACAAAGGTCC 60 28521646 28521664 AGAAGAAGGGATGTCCAGC 59 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147 3 1 2 163 1 74999558 74999577 TGTCTACCATAGCACCAAGG 59 74999702 74999724 AGAAACGTGATTTCTCCTGTC 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055 2 1 2 80 13 47962102 47992972 CAACCTTCAACAAGAATGTCTG 58 47962043 47962063 CAATCTTCTGCTTGATCTCCT 58 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 2 2 3 85 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638480 ACAATCATTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 2 2 2 107 9 100290535 100290943 CTCTGAGGATAAGGTGCTG 57 100291014 100291032 TTAGGACAATGTTGCAGGG 58 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880 1 1 2 170 1 253242741 253247463 CACTCAAGACATCAAGTAAGGT 58 253247592 253250175 GTATAAGCCCTTTCTTTGCTG 57 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 3 2 2 80 18 2071657 2071676 GTTATACTGCCTTGCACCTG 59 2071718 2072127 AGTTTGCATTTCCCTGATGC 60 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 1 2 2 146 1 222170574 222170593 TGAACCTGAGAAGCTGTACG 60 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000004966 1 1 2 88 10 108630897 108639108 TGGAAAGGGTGCTGTATGAG 60 108639158 108639177 GAAAGGTACCTCTCGGAAGG 60 NA InUTR Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000004528 1 1 3 99 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034749 51035431 CATTCTGAGGCTCCCTCTC 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330 1 1 3 80 X 142247717 142247738 TAAGTGTCACGAAATCTTCTGC 59 142129519 142247676 TTAAGCTGAGGCTCTTCGG 60 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000064780 1 1 3 89 X 142129522 142164077 CGTATTCAGAGCCTCAGCT 59 142129451 142129469 CAATGGTTCCATCTGCCTG 59 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 1 2 2 80 1 80650030 80650048 GTGCAGAGTGGAACATGAG 59 80647698 80649986 GATACTTCGGGAGGGTAGC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 3 5 7 80 15 34691479 34691910 CTACTGGTAAGGGAGACTCAG 59 34691419 34691440 CAGTACACAAGCGATAACTGAC 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 3 3 3 81 18 73260153 73260176 CTTAATAGAGCAGAGACAAGTCAG 59 73260216 73263202 GTGGGTTTGAACTCCTGTG 59 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 1 2 2 80 19 56784321 56787155 TTCTCACTGATTCTGACTCCC 59 56784261 56784279 GGTTGAGGTGGAGGTAGAC 59 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 1 1 1 132 15 34252042 34252060 AACTCTCGGACGATCTTCG 59 34252506 34252524 CTACACGTCGAGTAGCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000080056 2 1 2 104 7 139647409 139649277 TCTAGCAGTCCTACTTTCTTCC 59 139646372 139646391 CTTCTGCTCTTCAATCTGGC 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000064557 1 1 2 80 3 8962279 8963394 CCTATAGCAGGCCCATCTC 59 8963437 8963456 CTGTGTACTCAAACCAGAGC 59 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000079549 1 1 3 80 13 113837366 113837455 ATATCTCCTCCTATAGCTTCATGTG 60 113836242 113836261 CAACCCTTTCTGGAATCCAC 59 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 2 3 3 80 4 156063842 156063862 GAACGAGAGTGAGAAGAACTG 59 156063902 156064911 GTGATGAAGTCCTGTTCTTCC 59 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 3 2 3 80 20 3992059 3992449 AGGAATGCAGGCTATACTATCTG 60 3992487 3992507 GCATCATGTTGGAAAGTAGCT 59 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000086335 3 1 2 84 18 6029721 6029739 CTTACCAAGGACCACCTCC 59 6026887 6029677 ATAATTAGGATACTGAGGCCCTG 59 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 1 2 2 80 1 217030224 217032231 GTCAATGTCTTACAGGCCA 58 217032275 217032293 ATGGCAGATGTCAATGGTC 58 NA Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 1 2 2 80 8 117592552 117592570 AGCATGAAGTGTCATCAGC 58 117592611 117598494 CAGCAAGATGAATTTGTACTGG 58 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000087592 3 1 3 110 9 118849389 118920879 GAAGGACTGACCAGGTTCC 60 118920952 118920971 CCATGGCTTTGATGTAGCTG 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 3 2 2 99 8 117065069 117065517 GTTCAAGCACCAGATGCTG 60 117065580 117065598 TTCCTCCACGGAGAAAGAC 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452 2 1 2 82 8 117066575 117066598 CTAATCATACTTCCACAAGGATCG 59 117066713 117067565 GCAGAAGCAAGTGTAGGAG 58 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018452,ENSRNOT00000018272 2 2 3 81 1 231398261 231398281 GGTTTGTAAGCACTGGAAAGG 60 231396282 231398221 GATTCTTTGGACTGGAAGATGC 60 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471 2 1 2 89 20 34894586 34899855 GTCTGAAGACTTGGAGTGGA 59 34899906 34899925 GGACCCACTAACACAGAGTC 60 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764 3 1 3 132 18 15463867 15480345 CATCGCCAACACATACCTC 59 15480441 15494598 TTCGGGATAATCTGTCCCA 58 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 1 2 2 80 7 50219001 50221986 ACAATTTACTTTCAAGGTGCCC 60 50218942 50218964 GAGAAGCGATCAAAGTCATACAC 60 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 1 2 2 80 8 119085452 119085471 AGTCTTTCTTGGTACAACCG 58 119085513 119086672 CCCTTGATGATCTACCTCGT 59 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000088909 1 1 2 80 15 103329443 103334488 CTCATGTAGATCTTTCATTCGTCC 60 103329386 103329410 CAGTATTTACCAGAACATGAGTACC 59 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 1 2 2 81 13 50987628 50987646 TTGACTGGGAATACCCAGG 59 50987690 50987906 TTGGCCAAATCCTGTATCAG 58 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 3 3 3 89 12 31589111 31589892 GACAGATCATCAAGGTATATGGAG 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 2 2 2 80 15 35415511 35415658 CTGTTAAAGCTGAAGAGTAAGGC 60 35415453 35415471 TTTCACTTTGACGTTGCGT 59 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 1 2 2 80 13 67600982 67601632 CGATCCAAAGAGTTCAGCA 58 67600920 67600939 GTACAGTCTAGAGACAGCCA 58 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000088235 3 1 2 82 4 57833114 57833912 TGAGAACCAAGTTCATCAGGA 59 57833956 57833974 CTTGGGACAACAACCAAGG 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000087961 1 1 2 90 1 216728549 216728567 CAAGCAAGTGCCCAATGAG 60 216725497 216726172 GAATTCGGAATCTTCATCCAGAG 59 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 1 2 2 80 8 116273329 116273350 TCGTAGTATGATTGACGGAGAC 60 116273387 116273516 TCATCTATGTACCTCTCATCCAG 59 NA Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000081087 3 1 2 81 14 37262073 37294248 ACATTGGAAAGACTTTCAGCTG 60 37262013 37262032 TAGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 2 1 2 82 3 114921002 114921022 GATTCAAGATAGAGTGGCGGA 60 114921066 114921620 TTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 3 1 2 80 3 114921003 114921022 ATTCAAGATAGAGTGGCGGA 59 114921061 114925706 ATATCTGTAGGAGATCTCCTTGC 59 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 3 2 2 81 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859815 112863266 GATTGTATATTCACCTGTGCTGG 60 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737 2 1 3 82 5 59506499 59506518 TCTACAAACAACCCTTCGCT 60 59507732 59508707 TTCTGCTGCCTGTTCTAGG 59 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000018083 3 1 2 80 4 153909438 153910088 CTCATTATGCTCCCACAGG 58 153910131 153910150 AAAGAGAAGACACATGCCAC 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124 3 1 2 88 1 184187093 184187113 CACTGGTGCAGAACTATATGC 59 184185126 184187043 CTGGGCAGTGACACTAGAG 60 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000087656 3 1 3 80 12 25359625 25359643 CACTACAGGACACGAAGCT 60 25359687 25363314 GCATCATCCTCATCTGGCT 60 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 1 3 4 80 17 4256828 4270839 TGGTGATTTGACCAACACAG 59 4270882 4270900 CGGAAGATGGTTGTCTCCT 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 2 3 3 80 14 763270 763289 AGAAACAAACAGCAGACTGC 59 762045 763232 GTTCCATATGTACTGTCTCATTGG 59 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729 3 1 2 105 5 129081639 129081658 TCAAACTCCTAGACTCTGCA 58 129082149 129082324 ATTCTTGTGCAATCCCACTG 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855 2 1 2 80 8 17485239 17485513 GTCTACAGAGCCTGACAGG 59 17485177 17485195 CCAGTCGTAGGGTCAATCC 60 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000056058 3 1 2 80 4 157148802 157149694 ACATCTTGGAAATTTGCTGC 58 157148741 157148761 TTTAATAGTTAGCGGTCCAGG 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 1 2 3 80 18 12028715 12028734 GACGCAAATTACAGAGTGGG 59 12028771 12029100 CATTACGTATCTAACATTGGTGGAG 60 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425 3 1 2 88 11 82633946 82633965 TTACAGGACGAAAGCAAGAC 58 82632576 82633895 TGAGGAATCTCATGTGGCT 58 NA Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 1 2 2 80 15 38217677 38219484 TACGATCCTCACAAAGCCT 58 38217615 38217639 CTCTCAATCATCTCATTACCATCTG 59 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 3 2 2 80 1 80345148 80345807 CCAAGAGAATTGAGGTGATGG 59 80345088 80345107 CGTTGTACTTCTGGTTGGTC 59 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801 3 1 2 84 3 123072604 123073061 GCATCCTTCATTGATGGCT 58 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 1 2 2 80 5 165924833 165924851 TCTGTCTCCCTTCCAACAC 59 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000081373 2 1 2 80 15 39658038 39658057 GGAATCACTGTGGAGAATGC 59 39658095 39669083 GAAGCACTGAGTACTGTAATTCTC 59 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 2 3 3 80 1 275866081 275866099 TGCCACAACATCAAAGCTC 59 275862946 275866040 AAGCTTGTGAATCAAGGTACTG 59 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850 1 1 2 80 1 8878081 8878101 GAGCATACAGCACCATTTGAG 60 8860017 8878043 GCATATAAACGACAGTAGTAGGC 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000067251,ENSRNOT00000068116 3 2 5 118 11 78241995 78242013 GACATGAATGGACTCAGCC 58 78237921 78241913 TGCCAAATCCTGACAATGC 59 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 1 2 2 82 5 129163926 129163945 GCAAACCAAAGCTTAAAGCT 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000087906 2 2 5 88 2 1508855 1510438 CAATCAAGTGAGCCACCTG 59 1508312 1508332 GCATGCTTAGGAAGAGTTTGG 60 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000041961 2 1 2 80 18 17320705 17326199 GATGATCACTGACTCTGGC 58 17326243 17326261 TCCTCAGCATAGCTCAGAC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 2 2 4 81 8 117889824 117890854 CCCAAGTGAACAAGAGATGG 59 117889561 117889582 TAGAAGAACCACCTCTTCAGAC 59 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625 1 1 2 81 4 156992539 156993280 TAACTCTGAGGGCACATCG 59 156992476 156992495 AAATTCCACCTGAAGAGCAG 58 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000080404 3 1 2 86 10 17498158 17499876 CAGAGGCAGGAGAGTATGC 60 17510925 17510945 CTTCTGCTTGGCTACAAAGTC 60 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511 1 1 3 106 2 200713710 200713728 CACATATTCTGGCTGCCAG 59 200586066 200713642 ATCATCATAGCTTTGGTGAGG 58 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000086607 3 1 2 83 4 24619253 24619271 GCTATACCCAGGCTCAGAG 59 24619318 24623342 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000026748 3 1 3 80 1 199543232 199543727 CATCAGTACCAGTTCAACAACC 60 199543767 199543786 CTTGTTGATCTGGACAGGGA 60 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000022646 2 1 2 91 17 10040958 10040982 CCAACAAAGTAAAGAGATACCTAGC 60 10039056 10040909 TCTGCTGCTCTTCTGATCG 60 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893 2 1 2 80 6 146805776 146806429 GCGAGAAGATGGTTCAACAG 59 146805715 146805733 TTGTGGAGAGTCTGTGAGC 59 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 3 2 3 151 10 70566473 70566491 AAATCTTGACCTGGGTCCC 59 70579747 70580555 TGAAGGACTGTCCTACTGC 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000012681 1 1 2 88 5 134484679 134484697 TCGAGAAGTTCCCATCCAC 59 134477707 134477822 CATGCTCCAAGTGACAACTG 60 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000086117 1 1 2 116 11 87375986 87376004 GACAGAGGTGTCAGAGCTG 60 87376187 87376903 TGTTGGTCTGCATCATCGA 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000086117 2 1 2 117 11 87375986 87376004 GACAGAGGTGTCAGAGCTG 60 87376187 87376904 ATGTTGGTCTGCATCATCGA 60 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 1 3 3 80 4 162166199 162166791 GAGGAGCTGAATTTCCTAAAGAG 59 162166830 162166849 AGGGTCTGCTGATGATTCTC 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 1 4 4 80 20 4583703 4583721 GGAAGAGGAGGAAGAGGAG 58 4583765 4583867 CTAGAGCCACTCCTGTCTG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 3 4 4 80 20 4591626 4591815 CTTAGACAACAAGGATGGTGAG 59 4591855 4591874 CACAGGTGGTTAATGAAGCG 60 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 2 2 3 80 X 70974260 70974279 TTGTCCAGTCAACTCCATCC 60 70973770 70974220 GTTAGTAGTACAGCAAGCAGTG 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000017828 2 1 2 80 2 3788644 3809223 ATCCAGTAAGTTTCAGACCCA 59 3809263 3809283 ATGCTGACTATTCCTCTCCAC 59 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219 3 1 2 88 7 114523678 114523696 CACATGCAGTCTCTGTGTC 59 114504783 114507019 ATAATCCCTGGTTGAGGGC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079108 3 1 5 80 3 8595005 8596954 TCCAGGAAACAAGATACTGGA 59 8597455 8597475 CTTCAAGCTGAGATTCCAGAG 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000051385 1 1 3 80 5 134492969 134494119 TTCTTTGGGCACAAGTTGC 60 134494163 134494181 GGCACTTGGGAAATTCTCC 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 2 3 5 110 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572868 71579460 TTCATAGATGGCGACCTCC 59 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 2 2 2 96 8 116885170 116887269 GACTAGGTAGCCAGGTGTC 59 116885092 116885110 GGAAGGTGAGCTTCCTCTG 60 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822 1 1 2 154 6 55677876 55686720 CGCTCCAGTTGAAATCGTG 60 55686838 55687930 AATTGGCATTCGCTTCCTC 59 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 2 2 2 81 5 146661879 146661900 CGATACCATCGTGTATTTCCAC 59 146661942 146667897 TTGGAGTTCGTAGGCTTGG 60 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000077999 3 1 3 85 8 78009895 78019505 CTTCTACCCAGCACAACAG 58 78009828 78009848 GTTAACTCCAGGACTCTTGTG 58 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000076225 2 1 3 81 1 48051107 48051127 TAAGCAGAACATCCATAGCCT 59 48051170 48052272 GAAACGCAGTTCCTTCCAG 59 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000050620 1 1 2 80 7 130036180 130037253 ATCGTCATCTCCACTGATCC 59 130037294 130037314 TAGATCACACCCTGTGTAGAC 59 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000075851 1 1 2 60 10 70399803 70399823 TCTTTGGGATTTGAGCTACGA 60 70399845 70399863 GGCAAGGATCAGTAACGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681 3 1 2 80 5 150466863 150467738 ACTCAGATAGCATTGATTGGC 59 150467779 150467798 ACACTTCAGCTCATAGAGCT 59 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000090751 3 1 2 100 4 27244946 27246514 CTGGAGCAGAATTTCTACAGG 59 27244866 27244884 CACTTGCTTCTGTAGGTCG 58 NA Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000085235 2 1 2 86 5 135257449 135257468 ATCTCTTGGACAGTCTGCAC 60 135197073 135234802 TTACTCGTCCGACAGAAGC 60 NA Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261 1 1 2 80 5 135257450 135257468 ATCTCTTGGACAGTCTGCA 58 135216685 135234810 GTAGAGATTAAGCTGCCTCTC 58 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281 1 1 2 92 6 136356407 136356425 AACCTGGGAGCACTTTACC 60 136356481 136358001 GTCAAGACCCTGCTTACGT 60 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 3 2 2 80 10 109969456 109969559 TGTCATCAAGGTCAGTGTC 57 109969602 109969621 ATCTCTGGAGTAGACTCAGC 58 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 3 2 2 80 5 134656581 134663844 CACATTTCTGAACGTTGCC 58 134663886 134663906 TAGATCTCCTTCCGATCAGTG 59 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 3 2 2 80 14 3251053 3251435 GATTCATCAGAGATCCCTGGG 60 3250993 3251013 GTGCACATAAGATCAACAGCA 59 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824 1 1 2 80 14 3248349 3248848 TGAGTACTGACTCAGTACTGG 58 3248289 3248307 TGGTTGGTGGTTTGTAACG 59 NA Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 1 2 2 80 2 115774712 115774733 TCTATCTCATGCTAAAGCTCTC 57 115774771 115788188 CAAAGTAAATGAGCATACCCAC 58 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000077898 2 1 2 101 2 203386766 203386784 CTGAGTGGCAGCAATATGG 59 203385164 203386701 GTGTGGAATATCCTGAGCG 58 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000066934 1 1 2 80 9 93239044 93239062 AATCCGATGATGACGAGGA 58 93265896 93265915 AGAGTTCTCCAAGCTGGTC 59 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083 3 1 2 82 20 27039179 27039200 AGAAGGAACCTTAATCGAAGAC 58 27041785 27043788 AGATCTCCTCTGGTTCTGC 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000060327 2 1 7 159 20 4091632 4091650 CATCTACAACCGGGAGGAG 59 4091821 4095063 CACCTTGGGTTCAACTGTC 59 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 3 2 2 80 4 9754836 9756517 CACTAAGGACGCAAGATCTG 59 9756560 9756578 GAGCAGCCGATACTATTGG 58 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294 3 1 2 84 7 117149826 117149844 TCATCCACGGAAACCTGAC 60 117149543 117149778 AGATCGTCAGGAAGTGCAG 60 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 1 2 2 80 20 33185804 33185822 GTTCGAGTCTTCACCTCCA 59 33179582 33185761 TGGACATGGCTTGATTTCTG 59 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 3 2 2 80 20 33207611 33207629 TTTGGAGCAAACCACTCAG 58 33206494 33207568 ACCAATCCATATCTGACACG 58 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290 2 1 2 121 7 144309531 144309551 AGGCTGAAGATGAGAAGTCAG 60 144309240 144309448 TCCACGGAAGATGAAGCTG 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000086685 1 1 18 91 1 43454950 43507138 GGAAGTTACCTCAGATACACCA 59 43507190 43507208 AGTGTACTGGTCGCTAAGG 59 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764 2 1 2 80 10 53571043 53571061 CTCATGGCTGCTTTCTTCG 59 53571689 53571895 AGACTTCTGTGTCACCCAC 59 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 3 1 1 67 X 15425831 15425849 GACGAGACTCCTGATGTGG 60 15425376 15425394 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 2 2 2 80 18 38329673 38329691 CTGTCTCAGTTCTTCGCCT 59 38321402 38329630 CATTTGGGTTGTCATCTGCC 60 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000078392 1 1 2 190 X 15040726 15041146 CATGGGACCTGACAGTCTC 60 15042902 15043005 ACTGAAGCCATGTAGGAGG 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 3 2 2 80 11 86518525 86518543 CACGTGTACCAGTTTCCAG 59 86518587 86519144 AGCACTTTCCTTCAGTTCC 58 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 3 2 2 80 5 6020357 6020377 AGAATTTAAGGGAAGTGAGGG 57 6019872 6020318 TGTTGTAATAGCTCTGCTTACC 58 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564 1 1 2 81 18 27635020 27635040 CTAGTCTTCGCCTTCCACC 60 27639507 27639530 CAATCTTGAGCTCAAAGTAGAAGG 60 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564 2 1 2 85 18 27635010 27635030 TGTACTGGCTAGTCTTCGC 59 27639506 27639526 CTTGAGCTCAAAGTAGAAGGG 59 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767 3 1 2 80 9 112412043 112412063 AAGGATCTACTCAGACGTGAC 59 112412102 112426567 CCTTCTATTCCCTGTATGTGGT 59 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 1 2 2 80 10 88282226 88282428 CTATGCAGATGACATGGATGC 59 88282166 88282184 TCCATGTGCATATCCAGGG 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 3 2 3 80 6 136119894 136127002 AAACTCACCAGAAGACTTCCA 59 136128838 136128858 TTGTTCCGAAGATACATTGCG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000026920 3 1 2 86 9 17819195 17819386 TAATGCTTCTGATGCCCTG 58 17819435 17819454 TCAATCTTCAGCTCTTTCCC 58 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000078202 2 1 2 107 18 28426417 28427864 CAGCAACTCAGAATGAAAGAG 57 28425931 28425950 AGCTTTCATCTCTGAGACAC 57 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259 2 1 2 105 11 33978741 33978760 TGTGTAGAGCTGTTCTACCG 59 33978828 33980187 TCCACCTTGTTCCCTTGTC 60 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000083594 1 1 2 80 11 33980225 33980243 GAGAAATCCAGGGTAGTCG 57 33980289 33980896 GAACAACAAACAAGGACAGG 58 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000067281 3 1 4 80 5 58711027 58713082 GACTAAGGACTACTGGGCA 58 58713124 58713144 CCTGAATAGAGACTTCTCCCA 58 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000091316 2 1 2 81 9 114990103 114994606 CTTAGTGCCAATCAATGATGAG 58 114990043 114990062 CCGCTTCTTGTAAGTATGGG 59 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653 1 1 2 150 2 127688923 127692081 GAACAGAATGAAGCCCAGG 59 127692195 127692213 TGCTAGTCCAAAGTCAGCA 59 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 2 2 2 80 17 16370050 16370069 ATGACATTTGCCTTACAGGA 57 16370111 16372544 ACATGCTATTAGCACACCTG 58 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675 2 1 2 80 10 17209279 17236582 AGCATTATGTCTACATCATCCG 58 17236623 17236641 CAAAGAACTTGCTGTAGCG 57 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 3 1 1 96 16 9074178 9074196 GACACCAATCAATGGGACG 59 9075380 9075399 CTCATTCCTCCTCATGGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765 3 1 2 96 5 122643554 122655276 GATGTGATGCTGCCATCTG 59 122659440 122659458 CATGAACCAGCATGTCAGC 60 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000061992 1 1 2 80 4 7258309 7258825 AAAGAATAGCTCCTTAGCACC 58 7258867 7258885 AAGGACAGTCACCTCATCC 59 NA InUTR Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 2 2 2 86 5 59148108 59148201 CAGATCTGTAAAGAGGTGCA 57 59148041 59148060 CACTCTGTAGTCATGGTGTG 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 2 3 6 86 9 17351565 17351584 GACGTGTAAATGTTCCTGCA 59 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 2 2 2 81 2 18412046 18415167 ATCCAACTTCAATGGCCGA 60 18415211 18415230 ATTGAGACAAGCTTGCACTG 59 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000065058 3 1 2 113 9 100942900 100942918 GAAGACTGGATGCTGACCT 59 100942995 100943160 TTTCTGACTCCGACTTGCT 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000005861 3 1 2 99 6 86739142 86744792 CCAGTGCAGGATTTACAAGG 59 86744848 86744872 CCAACAATTACTACTGAGTCTTCTG 60 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506 2 1 2 151 14 820035 820055 AGTGATGTTGGTTACAGTGG 58 820173 820191 ATGGAGGATGGAACCTGAG 59 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000083587 1 1 2 93 1 116674238 116674257 TACAACAGGCACAGACAGAG 60 116674313 116679772 GTTGCCGTGTCTTTCTGTG 60 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366 2 1 2 94 1 116674237 116674255 TTACAACAGGCACAGACAG 58 116674311 116675341 TGTAGGTAACCTTTCTGTGTC 57 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127 1 1 3 80 11 20471790 20472023 AGGCCTGGTTAATTCTAGTG 57 20474520 20474538 GATTCACCCACACTAAGCT 57 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127 3 1 3 81 11 20471790 20472023 AGGCCTGGTTAATTCTAGTG 57 20474521 20474539 AGATTCACCCACACTAAGC 57 NA Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 1 2 2 83 17 31442648 31442667 AAGTTACCATGGAGACAGTG 57 31442710 31442965 CGAGGCACATATTTATTACCAG 57 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000071439 3 1 2 99 9 20216281 20216300 CAGGAAGTACACGAGAAGCT 60 20216362 20216504 CTCCAGTCACAGAACCTCC 59 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126 1 1 2 80 2 263940373 263940391 GAACCAGATCTTGGATCCC 57 263940435 263978822 AGGTTGTTCATCATCTGGC 58 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 3 3 3 80 4 22102453 22102471 GCTGGAATGAACCTGTTGG 59 22102514 22103245 GATATTCTCTTGCCTTCGCC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 2 2 3 81 4 22111747 22111765 TACGAATTCAGGGAGTCGT 58 22111810 22115359 ACCACAAACCTGTCATCTC 57 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183 2 1 2 80 1 277091123 277093129 TATGAAGACGATGATCCATGC 58 277093170 277093189 GCAACTGAAGGTATTCCCTC 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133 3 1 2 80 11 4261687 4261705 CTTATCGATGCGAAGCCAC 59 4246488 4261643 AAGTGTTGGGAACATCGTG 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000068444 1 1 2 80 3 79861377 79861397 CAACAATGATGACACCATGCT 60 79861438 79866729 TTCATGGACTCCTTGACCTG 60 NA Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 1 2 2 80 10 56665292 56665310 AAGCTGACAAGTACTGCCA 59 56665354 56665441 GTTGCTGGACGAATCTCTG 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 1 2 2 80 7 66667500 66669015 GAGCATTTAAGACACAAGTAGG 57 66669055 66669074 AAGCTAGTAGTTCTTGGCAG 57 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078219 2 1 5 85 4 164687332 164688187 AGATGAATTCTCCAAATGTCCC 59 164687268 164687287 TATTGCAACAGCAACCAGTC 59 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341 1 1 2 80 7 54875539 54875561 GGCTACAAACAGTACATTCAGAG 60 54875598 54878769 TCCTTCTACCTTCTTGTTAGCC 60 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 3 2 2 86 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA InUTR Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000066545 1 1 2 80 6 147099214 147099232 CACAGCACTGTGTCAACTC 59 147097879 147099171 GGCACTGTAGACAATTCCTG 59 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000086460 3 1 2 80 13 68771828 68771944 GTGTGGATTCCAAGTCTACAC 59 68771768 68771787 CATTTGTTTCTTGGTGCTCG 58 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488 1 1 2 99 6 105467608 105467626 AAGAAGAGGAGAAGAGGGC 58 105463801 105467545 GACTTGAGGCCTTCATCTC 58 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098 1 1 2 80 10 56852874 56852893 CTCCCTGATGTTCAGAAGTC 58 56852704 56852831 TAGAGGTACCATGTCTGGC 58 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821 1 1 4 90 4 167483799 167483817 CTATAGAGGTCGTCCTCCA 57 167483871 167483890 GATTCCTAGTCTTCGAGGC 57 NA Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905 2 1 2 80 12 38279799 38282321 GAAGCAAAGAGGCAAGAAGAC 60 38282361 38282381 GTTCTTTGTCATTGTGCTCCT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000045165 2 1 4 82 1 139943442 139943463 AACCTTCTAGTGAAGATTGGAG 58 139903195 139943401 CCAGATGGATTAAAGAGCCTG 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 2 2 2 91 16 81204888 81205781 TTCAAGGACATGGTCCCTC 59 81205836 81205854 TAGGCTAGGATCTGCTGTG 58 NA InUTR Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 3 3 3 87 7 107198093 107203733 ACAGTTAAAGTGGTTGGATGG 59 107198026 107198045 GATTTGCTGTTCAACTGCTG 58 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250 1 2 3 80 7 107130754 107141722 AAAGCCCAGAAGAAAGCAG 58 107130692 107130715 TGTACTATAGTAGACACATCAGGG 59 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 1 2 2 80 2 122625542 122628090 CATGACAGAGTTAGGATGTGAC 59 122625483 122625504 CCTGGTTCTTTCAATTCTTGCT 60 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812 1 1 3 81 19 15210723 15212170 TCTGTTCTTGTGTTATCTCCTC 58 15212212 15212230 GAGCAGTATTGAGGGACAC 58 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 1 2 2 80 7 119707425 119709380 CTTTGACAACCTTCGCCTG 60 119707363 119707384 TCCCAGCTTATGTTACATCTCC 60 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090 2 1 2 100 13 84591832 84596598 GTTTCTACACCAGAGGGTG 58 84596662 84596680 TGACGAACAGAAGAAAGCT 57 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 2 1 1 76 2 25235139 25235157 GAGGTATCACCCTTCTGGC 60 25225108 25225126 TCTCCCTTTACTGTTGGGT 58 NA DesignNoJunction Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 2 2 2 80 5 151449232 151451098 GGATACCTACATTCAATGCTCAG 59 151449174 151449192 AGACTTCGTCGAACCACTC 60 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973 3 1 2 84 10 109604594 109609940 AGAGGATCATAATCCGTGTCC 59 109604530 109604548 TTCAGAAATGTTGCGGCTG 60 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 2 2 3 81 20 5109838 5109857 CTCACATGCTCTTCATGGTG 59 5108905 5109794 TTGAAACCGTAGAGCCTGG 60 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 2 2 2 80 10 25906504 25906607 CTAAGGCAAAGCCTTCTGTG 59 25906443 25906467 CTTCTGTTAACTCCACATACTTCAG 60 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370 3 1 2 81 7 118165658 118172119 CTATCCAGGAATAGTGTTACAGG 58 118159163 118159182 CTGTGCATATCTGTAGGCTG 58 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341 1 1 2 80 3 35173751 35175386 AACAGAAGTCCCTTTCTTGC 58 35175429 35175447 CCCTCATCGATCACATCCA 59 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000002881 1 1 2 80 11 30411714 30411735 AAGTGGTCTAGAGATGATTGGA 59 30410102 30411673 CAAGCTAAACCTTGCTCCC 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000085756 1 1 3 117 3 14643904 14644876 TCAAGATCTGGATCACAGGAG 59 14637206 14643825 AACTGTGGGTCCTGTTGAC 60 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000018137 1 1 2 99 1 234364031 234377621 CTGCACAAATTGAAGTGATACC 58 234377681 234388936 CTGAAGAATCCCTTGCAGC 59 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 1 2 2 80 2 22348105 22349767 GGAAGATAGCAACAATGATGG 57 22348045 22348064 ACATCAATGCGATCAATGAC 57 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387 2 1 2 89 13 83871485 83871503 CCAATGTTGACAGCTCAGC 60 83865736 83871432 ATGGTGATTTCTCCCTGGC 60 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 2 2 2 80 3 46711074 46721469 AACCCTTGCAGTAGTATCCC 59 46711013 46711033 CTCAGCATCATCAGTCAATGG 59 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000050344 1 1 2 88 8 116841404 116841668 GTCTTGGAGAGCCAGACAG 60 116841334 116841352 TTGGAGAACTTAGCCAGCC 60 NA Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 2 2 2 60 16 18640730 18640751 CACAGGAATATAACCAAAGCTG 58 18640367 18640387 CTTCTTGAAGTTGTAGCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000057036 3 2 3 80 12 46413625 46414614 GTGTCACAAGATGGAGCAG 59 46413563 46413582 ACCTCCTTCTGACTAAGCAC 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476 3 1 2 90 4 145715555 145715573 GAAGAGATAGACCACGCAG 58 145714268 145715503 CTACTTCAATCTGTGTCTGGA 57 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 2 2 2 80 7 18416360 18416380 ACGTAGTATACAAGCGTTCCT 59 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 3 2 2 81 2 122803146 122804438 GACCATGAGATTCTGTTGGC 59 122804482 122804500 ACTTGTCCAGCTGAGACAG 59 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000019946 3 1 2 133 10 62689965 62689983 GGGCAGTGAGTATGACCAG 60 62690272 62690298 TGACACCAGGTGTTGAAGG 60 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000082564 3 2 3 95 1 135818678 135818699 CTTCTGTCATCATCCTCATCAG 59 135800172 135813217 GGATGAAACCCAACAAACG 58 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 3 2 3 80 20 5118418 5118574 GATGTGGTCTTGACTGACAC 59 5118613 5118635 GTCCTACTCTGAATTCAGAAAGG 59 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000017453 2 1 2 82 2 143677507 143677526 ATAACCAAACTCGTGGAACC 58 143677571 143680513 GTCATTGCAGGTCCTTCTG 59 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 2 2 2 80 3 1389540 1389558 ATCCTGGGTGTTCAAGGAG 59 1389600 1389825 GTTCACTGGCTCAAGTTTCAG 60 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000031855 3 1 2 82 5 155966639 155968392 AATGAAGGGCAGTGATGGA 59 155968436 155968456 GCTCATCTAGTTGCTCAAGAG 59 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126 2 1 2 83 20 5121521 5121724 CCTCCTCTACAACCGATCG 59 5121456 5121474 GCTTTGAAGTCCAAGCAGG 60 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126 3 1 2 84 20 5121524 5121727 TTTCCTCCTCTACAACCGA 58 5121458 5121476 TTTGAAGTCCAAGCAGGAC 58 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 3 2 2 80 7 2695956 2696366 CTCAATCACAAGAAGACATCG 57 2696408 2696426 CAGTTCATTGGCTGTTGTC 57 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000011224 2 1 2 194 3 9936327 9936606 TGTTGCCCTACTGGATCAG 59 9926868 9927756 GCCGTGTACTTGTATTCCTC 59 NA Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 2 1 1 60 3 148057397 148057416 GCCATATTTGTGACAACGGA 59 148051608 148051626 CCATGCATTGAAGGGTAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 1 2 2 136 1 69615629 69618792 GGGCTGTGTAACCATTGAG 59 69618892 69626053 ACCGATAAACCAGTGAGGA 58 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660 2 2 3 80 19 21484625 21492243 CTGCACAGAATTGGAACGG 60 21484563 21484584 GATCAGTAAAGTGTAGTGTGGC 59 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507 1 2 3 87 6 10378545 10378563 AAACTGAAGGAGGAGCCAG 59 10378614 10379611 AGTTCTGGCTTCCGAAGTC 60 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843 2 1 2 80 3 2032374 2032394 GAGATTCAGAGGAGGAACAGG 60 2030855 2032335 ATTCAGAACTCAGGTCAGACTC 60 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 1 2 2 81 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764993 93766520 TTCACTGCACTTTCCACCA 60 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 3 2 3 81 14 72335551 72335569 GTTCTCAGCCTTTGGATCC 58 72333613 72335507 ATCATAGCAAGTTCCACAGC 58 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000085060 3 1 2 80 8 21521989 21522761 AAACTGTTACCAGGATTCAGTG 59 21521930 21521949 GTCAGGTCCAGTAAAGTCCA 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000092063 3 1 2 80 1 251269707 251269726 CTTTACCTTTGGGATGGGAG 58 251262377 251269664 CCATACAGGAGAACACGGA 59 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 1 1 2 80 9 98410216 98418585 TGACTGTAAGCCCAGATGAG 59 98418627 98418646 CCATGTTGTAGGCATCAGGA 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510 2 1 3 80 12 44072333 44072351 ATTACACCTGCTGGAAGCT 59 44073512 44076179 CTTTGCGATTCATCCATGAGG 60 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104 3 1 2 81 8 59239852 59239870 TGACAGCAGAGACGATCAG 59 59222506 59239808 CCCATCAATTAAGGAGCTGG 58 NA Rattus norvegicus 81 Rnf24 ENSRNOG00000021250 ENSRNOT00000028869 3 1 1 68 3 123849761 123849779 GGATTTGCCCATGTAAGCA 59 123849059 123849077 ACACTTTCCGGACTTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 2 2 2 80 2 149926953 149935413 AGTGACTCAACTGCTACAGG 60 149935454 149935474 GCCTGTAGTCCAGGATATAGC 60 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 2 2 2 80 8 94008008 94069195 CAGGAATAAAGAGCTTGCCAG 59 94007948 94007966 TCCAAACAGGTTGTGGAGG 60 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843 1 1 2 91 9 43021400 43021418 AACAAGCAGTTCTTCGCTG 59 43018018 43021348 GAAACATGGTTTGCATATCTGG 58 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000080418 1 1 2 80 12 40631519 40631540 GACTTGAAGCACATCTAATTGC 58 40631125 40631479 ACTTTCTTTCCTCCGGAGAG 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000006117 2 1 2 80 13 85858092 85858112 ATTCTAGAAGCTGAGCTTGCT 60 85858154 85858274 AGGGTCATTTGTCGAGCTC 60 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000080699 2 1 2 80 2 104919821 104919840 TCACCACCAATGTCTTACCC 60 104917804 104919783 AGTCTGAGAGCATCATTAGATAGG 60 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 3 2 3 83 11 36749239 36749257 GTGTGGCAGAGATGAAGGA 59 36749304 36756783 CAATACTGTCCGGTGGAGG 60 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 1 1 1 60 3 161297815 161297833 GTCCAACTGGAGTATGGCT 59 161296508 161296526 TCCTCTGGATCACAAGACG 59 NA DesignNoJunction Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 1 3 3 90 9 44493705 44493943 CTGGGACTACAGAAGGCAC 60 44493994 44494015 TGCGTATCAAGTGTTTAACCAC 60 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000080755 1 1 2 80 1 67848150 67848171 ATGCTTACAGGACTGAATTGGA 60 67832569 67848112 TTGAAGGAAACGTGGAAATGAG 60 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 3 2 2 89 7 2824135 2824306 GATTGGAGAATTCTGCATGGT 59 2824066 2824084 GATTTGTTGGATGCCTGCT 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 3 3 5 81 X 159169769 159169789 CAGTATTACTGCGTGGATTGC 60 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 1 3 5 80 X 159169770 159169789 AGTATTACTGCGTGGATTGC 59 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 1 2 2 80 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296078 116296096 AACATCAGGAGTGCTTCAG 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000080934 1 1 2 99 19 24416310 24416328 CGGGCAGATTTGATTGAGC 60 24416391 24416564 TCACAATGGTCCGTACCAC 60 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000080934 3 1 2 111 19 24416298 24416316 TTTGGAACTATCCGGGCAG 60 24416391 24416564 TCACAATGGTCCGTACCAC 60 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 2 2 2 80 13 84104860 84104881 ACCTCAGCTTTAAGAACATGTG 59 84103654 84104821 AATCAGATGAGAGGTTCTCCG 59 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000032299 3 1 2 93 5 73937558 73942301 TTTCTGTCGATCCTGGAGTC 59 73937484 73937502 AGAAGAGGATGGTCAGCAG 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295 1 1 2 80 8 116758080 116758438 GACTACCAACAGTGCTTGAG 59 116758481 116758499 TGGGATCAAATTGCAAGGG 58 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000035915 3 1 2 92 16 9602072 9607680 CTGTTTGACAGGTTTCTGGA 58 9607734 9607753 GATGTTAGGGCCAAAGACAG 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000080339 2 1 5 80 1 215680138 215680157 ACCTTGTACCAACTGGAGAC 59 215680199 215681276 CCGGACAGTCATGATATCGT 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 3 2 5 112 1 215671961 215673425 CAGGAGGAAGAGGAAGTCC 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216 1 1 2 80 16 9640707 9640726 AACTCGTTACTACAGAGCAC 57 9639999 9640354 GAACATTGGGCAGAAATTAGAG 58 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 2 2 5 80 7 80745248 80777746 GAGTGGGAGATCACCACAC 60 80777789 80777808 GAAAGATTCTGGCTCCAGGT 60 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038,ENSRNOT00000038017 1 2 2 80 1 277139499 277139517 TGAGCTGAGACTTGACTCC 59 277137118 277139456 TCCTCCTTGTACTTCACCTC 59 NA Rattus norvegicus 81 Pdzd7 ENSRNOG00000032946 ENSRNOT00000043623 3 1 1 80 1 264785992 264786358 CTGCTGGCTAGATAGATTGAG 58 264785932 264785950 TAAGAGGAGACACTGGAGC 58 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 1 2 2 80 13 91191369 91195960 ATCTGGAAGTGATTTCTGACTG 58 91191310 91191330 ACCTTAATGTGATGGTTTCCC 58 NA Rattus norvegicus 81 Zfp335 ENSRNOG00000017290 ENSRNOT00000023521 2 1 1 80 3 161365753 161365773 ATGCAGAAGAGACTAACACAG 58 161365615 161365714 AAAGGACTTTCCACACTTATCG 59 NA Rattus norvegicus 81 LOC685699 ENSRNOG00000043358 ENSRNOT00000065789 2 1 1 150 X 23468077 23468519 GGCAAAGAAGTACTTCCACTC 59 23465653 23465672 GATCCATTCCTTCAACCCTG 58 NA InUTR Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000086116 2 1 2 160 7 60737957 60742346 CAAGAGACTCTGGTTAGACCA 59 60734902 60734921 CAATACACAATGTGCTGCTG 58 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 3 2 2 80 1 68453779 68455329 AGAGCTCAACAGTTATGAAGAC 58 68455367 68455388 ATTGGATGAGACGAATTCAAGG 59 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777 2 1 2 80 X 157869214 157878010 CTGATTTCAGTTCATGGTGGT 59 157878050 157878070 CGTTCATTTGTAGATGCTCCA 59 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777 3 1 2 80 X 157869215 157878011 TGATTTCAGTTCATGGTGGTG 59 157878051 157878071 TCGTTCATTTGTAGATGCTCC 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 3 2 2 81 3 51605330 51606645 TGGTACACTCTTTGTTCAGC 58 51605268 51605286 TCGGGAGGATTACTCAACG 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 2 2 2 81 3 51605330 51606646 TTGGTACACTCTTTGTTCAGC 59 51605269 51605287 CGGGAGGATTACTCAACGT 59 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712 1 1 2 80 8 50083263 50083282 GGAATTGCAGAAAGAGAAGC 58 50083040 50083220 TGGTAAAGCCAGTTCTCCT 58 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000087723 2 1 3 80 10 59533612 59538097 TTCAGCATAGCACAGAACTC 58 59538374 59538392 CCAAGAGGTCCTCAAACTG 58 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000024041 2 1 2 80 1 37747619 37747640 TTGATAAACGACTTCAGGAGCT 60 37747681 37749916 CGAGCTCTAAACCTACGCA 60 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000078001 2 1 2 95 3 43113047 43113172 CAGTGGAGGAATATGAACATCG 59 43112825 43112843 TCTCTTGGGTTCCTTGAGC 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115 3 1 3 82 12 46808359 46808464 GCTTCTCTGCAGATGAAGC 59 46808295 46808313 ATTGTTACTCTCCGGGACG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000081570 3 1 3 172 14 81014710 81023367 TTCATTGACCAGCAGTCTG 58 80995553 80995571 AGACGCTCAAATGACACTG 58 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 1 2 3 145 14 81014704 81037658 TGATCTCGAGTCTGCAACTG 60 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 1 3 3 119 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000037662 3 1 2 81 8 118402980 118402998 TCATGAGGCACGTGATCTC 60 118405413 118408119 CTCTTCTGGTCTTCCAGCA 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000082356 1 1 2 153 8 128577500 128585821 CGGGTTTCCTATGTAATTCGAG 59 128585935 128587751 ATGGATCTTGCTTGTGCTG 59 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 3 2 2 80 3 80573114 80573132 CTCTGTACATTGTGCACCC 59 80573173 80573348 GTCCAAACTTGAAACTGATGAG 58 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000074457 1 1 2 80 8 32306675 32306694 GAGGAAAGTGAGGAGATCCC 59 32302560 32306632 TGCCATTCCAGATCCTTCG 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818 1 1 2 80 8 32306681 32306699 GCTCTGAGGAAAGTGAGGA 59 32305141 32306637 GCTGAGTGTCTTCGTTCTC 58 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818 3 1 2 83 8 32306683 32306702 TGAGCTCTGAGGAAAGTGAG 59 32305141 32306637 GCTGAGTGTCTTCGTTCTC 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061516,ENSRNOT00000061515,ENSRNOT00000084506 3 3 5 80 13 34489087 34489105 CTCCTCATCCTCAGGTTCC 59 34489148 34498752 CGGATTCTTGCTAATGACGC 60 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 2 2 2 81 1 70260159 70260181 CCAAAGAGAATGATACTCCTGGA 60 70260222 70264200 GTCTTCTTCCCTGCAGAGG 60 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668 2 1 2 80 1 70254530 70254548 AGACACCAAACCAGCTCTC 60 70254590 70259431 AGATCACTGGTTCCTTGTACC 60 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000087579 1 1 2 110 3 167989578 167995638 TTCTTTAGGCACAAGGACG 58 167989486 167989504 CTTGGAACTCTTGGCTGTC 59 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 3 2 2 91 10 59897576 59897596 GTTTCCCATCTCTACCAACAG 59 59900813 59900954 TGGTATTTGCCCTGTATTCAC 58 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000086524 3 3 5 80 8 99640987 99641005 ACGTTCTAAAGGTCGTTGG 58 99641046 99643772 CCTCATCTAGAGATTTGAGCTC 58 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000091896 1 1 2 80 2 211221079 211221100 GGAAGAATAACCTCCGTTTCTC 59 211220521 211221038 CAAACTCCACCTTCTTGGG 58 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082408 3 1 4 80 9 47030713 47034226 TAGTATACCCAGCTTCAGATGG 59 47034267 47034285 ATGCAAAGGATCCCTCTCC 59 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 3 2 2 80 3 72450763 72450913 ATGTTCTTTGTGATCAGCCT 58 72450954 72450974 CTTTGAGAAGAGGAGGATCAG 58 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000008838 1 1 3 112 8 26431686 26434072 ACAACCGAAGAACCTTGAG 58 26434143 26447683 CAGATTCACCTACTACCATAAGAG 58 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805 1 1 2 84 20 54269466 54517312 CATGTGTTAAGATTCGGTGGT 59 54269402 54269421 TCACAGCAAATCTGAATGCA 59 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 2 2 2 108 10 37595145 37599645 GATGCCTACGATAAAGTTGCA 59 37599714 37605554 CATTCCCAAATCTTCCAGCA 59 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000014924 3 1 2 112 16 59197682 59219557 GATCCTAACACAAATTGAAGCC 58 59222876 59222895 CCAGCGCAATATCAATAGGA 58 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670 1 1 2 60 16 47179842 47179862 CTTCTGTTTAAATTGGCTGGG 58 47178442 47178462 CAATCTTGCTGTACTTTGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670 2 1 2 60 16 47179844 47179865 AGGCTTCTGTTTAAATTGGCTG 60 47178445 47178464 TCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 3 2 2 80 5 157445310 157446779 CATCAGTCAGGACCTCCTG 59 157460991 157461010 GTCACATGACAAACGAGGAC 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261 2 1 3 80 10 82252465 82252483 TCTCAAGAAGGAATCCCGT 58 82251517 82252423 AATTCTCTGGATCCTTTGACG 58 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261 3 1 3 80 10 82251521 82252427 AGAACGTCAAAGGATCCAGAG 60 82251461 82251479 TTTCTGACTTTGCACGGGA 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053 3 1 4 122 14 84278038 84282991 GAGCTCGGAACTTTGACCT 60 84283359 84283485 CATAGAGTCGGATCACCTCTG 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 1 6 8 81 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365874 4365892 TTTCCGCTTCCTCTGACTG 60 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 1 2 2 80 3 153235237 153238182 GGAGTAAGTTCCTTGGAGCA 60 153235176 153235199 CTTCATTAGATCAATCCGAGACTG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 2 5 8 80 20 4389074 4389092 ATGGATGAGCACAATGTGG 58 4388924 4389032 CTTCAAATAGTCCGTGTCTCC 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 3 5 8 80 20 4389074 4389093 CATGGATGAGCACAATGTGG 60 4388925 4389033 TTCAAATAGTCCGTGTCTCCA 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 1 2 8 84 20 4387143 4387161 AGAACTTCCTTCGTGTGGG 60 4382464 4387097 CCAAAGAAGCTAGATTGCCAG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 2 2 8 85 20 4387144 4387162 AAGAACTTCCTTCGTGTGG 58 4382464 4387096 CCAAAGAAGCTAGATTGCCA 58 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000087753 1 1 3 80 8 127243011 127243031 CTACTGTCCTAAGATTCCCTG 57 127243073 127245683 GAGGTGAGGTGAACATCAG 58 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000048764 3 1 2 90 8 118174104 118183375 CTCTCGAGCTTCTAGGGAC 59 118174032 118174050 ATGTGAGATGCCAAGAGCT 59 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 3 2 2 80 3 82926083 82935118 ATCTTTGTGCAGAGTGTCCT 59 82926022 82926041 AGAGGGCTTATCCAAAGTCG 60 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574 2 1 2 86 2 227580639 227582831 CTAGCTCAGCAGTTGGGAG 60 227580571 227580589 TGTTTCAGCGATCTCCCTC 60 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000079414 3 1 2 81 3 164046840 164046858 CTACTATGGCTGTGGACAG 57 164046251 164046798 GAACTCTGTGTAAGGAAGTAGG 58 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980 3 1 2 80 8 122024187 122031215 CTTACGTAACAATGGTTACCAC 58 122031255 122031274 GATTCTGAGCTTCTTCTCGA 57 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 3 2 2 80 8 94239144 94239162 CAGCAGCGAGAAACTTTCC 60 94236359 94239102 GTCAAGAGGCCATAATCATGG 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000064905 3 1 2 109 20 47643277 47647679 TATTGAAATAAGCCTGGCACC 59 47647750 47647768 GGTTATGCACTGCCATCTG 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 2 3 3 80 20 48563761 48564813 GATTGTACAGTGGGACATTCG 59 48564854 48564873 AAGACAATCGTGTTGACAGC 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000026418 1 1 2 80 16 74324419 74327573 CGATGTGAGCAATGCTATCG 60 74324358 74324379 GTAGCAGCTTCTTGTGTAACTC 59 NA Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 3 1 1 99 16 75241244 75241262 TTTCTCCTATGCCACTCCG 59 75227543 75227561 AGCATTGAGACAGAACCCT 59 NA DesignNoJunction Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000079020 2 1 2 80 3 52660197 52660216 TGCTTTGTACATGCTGTCTC 59 52659850 52660156 AGCATGCTGAATAATGAGTGC 60 NA Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 1 2 2 61 5 78262702 78262720 GCTCGATGACATTGAGGAG 58 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 3 2 2 62 5 78262702 78262721 AGCTCGATGACATTGAGGAG 60 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000081338 2 1 2 99 3 66719363 66719381 GATGAGAAGAGGGTGACCA 58 66722430 66779969 TGCTTGGTCCTTTCATAGC 58 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 2 2 2 80 5 152095741 152095759 ATCCCTCCGAAGAGATCGA 60 152094991 152095700 TGTCGTCATACACATCTTTCAG 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000012739 3 1 2 81 3 153582304 153582324 GACTATGAGTCACGGACAGAG 60 153582364 153586780 AGTCTCCCTCTGTGTTATTGAC 60 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 2 2 2 82 3 175983483 176040689 TCGTCATCCAGGTTAACACC 60 176040734 176040752 TTTGTTGGCAATCACGGTG 60 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 2 2 2 80 3 65864532 65869283 TTTAAGCCACCAAAGGTTACC 59 65869323 65869343 AATATCCAGGCAGATGACTCC 60 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000079096 3 1 4 122 16 81843115 81843133 AACATCCCACTCACTGGAG 59 81841615 81843030 ATACCTGAAAGCAGCTTCCT 59 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192 2 1 2 102 16 81105517 81113898 TTAGTCCTGGGAAAGGTGTG 59 81113963 81113981 ACATTGGACTGTCCGAAGG 60 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192 3 1 2 104 16 81105518 81113898 TAGTCCTGGGAAAGGTGTG 59 81113966 81113984 TTGACATTGGACTGTCCGA 59 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141,ENSRNOT00000006634 1 2 3 82 3 51410897 51410915 AAGACCTTTGGCTTTCCAG 58 51408701 51410853 GTGCCATTTACTCCATATCCT 58 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141 3 1 3 106 3 51410859 51410879 ACCCTACAGTTTATGTACCCT 58 51408707 51409138 TTTACTCCATATCCTCCCGG 58 NA Rattus norvegicus 81 SNORA17 ENSRNOG00000058595 ENSRNOT00000087401 3 1 1 60 5 3686325 3686344 TCATCAGTGGTGACAAAGGA 59 3686364 3686385 AGATGTTCATAGATCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060109 ENSRNOT00000081535 1 1 1 60 5 135784921 135784940 AATCCTCTTCCTCCCTACTG 58 135784880 135784899 GTCCTCCTTTATCCCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058638 ENSRNOT00000086855 1 1 1 60 2 181786281 181786299 TCAACCTCATTGACACCCA 59 181786321 181786341 GAAAGGGATACTTGCCTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139445.1 ENSRNOG00000059641 ENSRNOT00000091530 3 1 1 60 X 105651645 105651663 AGAGTCAGAACAGTGTCGG 59 105651687 105651705 TCATCCCTGATGCGATTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044362.1 ENSRNOG00000058490 ENSRNOT00000091390 2 1 1 96 20 3140450 3166531 TATGTTGGCAACAGCTGTG 59 3140372 3140390 GATTGCTGTCCTGGTTGTC 59 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 3 1 1 77 15 35953352 35953373 AGGGTTGATTTCTGCAAATCTG 60 35953410 35955776 AGAGCATGAGAGCTTAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055509 ENSRNOT00000082394 2 1 1 60 2 188168312 188168331 TGTGATTTCTCCAAACTCGG 58 188168353 188168372 AAAGCAGTCCTTCATTACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.1 ENSRNOG00000051378 ENSRNOT00000088119 1 1 1 60 2 225052667 225052685 ATGGCTCGGAGGTTAAGAG 59 225052625 225052644 TCCTCGAAATCAAACTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044200 ENSRNOT00000069467 1 1 1 60 2 142840852 142840871 GTGTGCCAAGGTTTACTCAG 59 142840811 142840830 GTATTAACCAGGCCCAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059989 ENSRNOT00000088735 1 1 1 62 8 76587450 76587468 GCGTCCGGAGGTTATAGAG 60 76587406 76587424 TGTTCACAGGTCAGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025288.1 ENSRNOG00000047260 ENSRNOT00000071611 1 1 1 60 16 31624922 31624943 GGACTGTAGAGATAGCTCAGTG 60 31624883 31624901 CGAACTCACATCCTCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045755 ENSRNOT00000071647 2 1 1 62 11 89141688 89141706 ACTACCCTGAAGAAGCCTG 59 89141644 89141662 AGTAACTAGGCTGACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055632 ENSRNOT00000085129 3 1 1 60 11 86179621 86179641 ATTCCTAGAGGCATTGAGGTG 60 86179663 86179681 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056185 ENSRNOT00000088818 2 1 1 60 8 68354316 68354335 CTGCTCTTAGTTGTGGTCTC 58 68354357 68354376 AATTAGCAATAATCGCGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059815 ENSRNOT00000089037 1 1 1 60 8 79563700 79563718 TTCAAGCAGACGCCTAGAG 60 79563741 79563760 TACTGAAGTCCAGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053629 ENSRNOT00000084140 1 1 1 60 11 71971348 71971368 AGTAGGTGACAGAGAAGACAG 59 71971308 71971326 GCAGGTGTTCACAAGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059595 ENSRNOT00000077354 2 1 1 60 16 36628273 36628294 GAACGGTACAGAGAAGATTAGC 59 36628234 36628253 GCTTCACAAATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000056088 ENSRNOT00000080344 3 1 1 64 11 68058504 68058524 TCCAATTGTCACTAGATCTCC 57 68058550 68058568 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033759.1 ENSRNOG00000044762 ENSRNOT00000070029 2 1 1 60 11 38902807 38902831 TACTAATAGAGAAACACTGTCTCGG 60 38902849 38902867 GAGCCTAGCCTTTAATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051575 ENSRNOT00000088411 3 1 1 60 16 59413910 59413931 GAAACTATGGTCAAGAAGGTGG 59 59413951 59413970 ATATCTGGAGCACAATGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050753 ENSRNOT00000071367 1 1 1 60 8 84353091 84353111 GCCATACCATCATGATCTCAG 59 84353131 84353151 TCCCATCCAAGTATTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135294.1 ENSRNOG00000053696 ENSRNOT00000079637 3 1 1 60 3 101047265 101047283 AAGCCCTAGGCATGAAGTG 60 101047223 101047244 CTTGAAGACATTCCTGAAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060696 ENSRNOT00000077724 2 1 1 60 16 81030658 81030679 TTAGAAGGACACAGAGATTAGC 57 81030619 81030638 CACTTCATGAATTTGCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056921 ENSRNOT00000077320 1 1 1 60 8 18227879 18227901 GGTAAATCTGACTGTGACATCTG 59 18227921 18227939 CAGATCAGCCCATTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056921 ENSRNOT00000077320 3 1 1 60 8 18227993 18228011 CAAACCTGCATGCTAGGTC 59 18228035 18228053 GACCAAAGACTGGTCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054127 ENSRNOT00000086819 2 1 1 65 8 38137486 38137504 TTTCTTTCCTCAGCAGCAC 58 38137439 38137457 TCATCCTTGTGGAGAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059239 ENSRNOT00000078695 2 1 1 61 1 144625669 144625690 TTAAAGTACCAAAGACACAGCC 59 144625629 144625648 CGGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059707 ENSRNOT00000088524 3 1 1 73 16 14468561 14468579 TAAAGGTGTTGTGGGTGTG 58 14468613 14468634 GAACAATAGCCTATCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041652 ENSRNOT00000063405 3 1 1 60 X 63048937 63048959 CTAATTTCATCTGTCCTTGAGGC 60 63048977 63048997 TCTCCTATCCAACTGCTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056492 ENSRNOT00000090969 1 1 1 60 X 101117194 101117215 GTGTCACATGTGCATTAGTAGG 60 101117155 101117176 GAACACTGAATGTAGACATTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000056950 ENSRNOT00000078012 1 1 1 60 X 26323820 26323838 GAGACCAGCTAAGGGTGAG 59 26323778 26323798 GCTAACCAAACATGAGATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059483 ENSRNOT00000087929 2 1 1 62 6 57104342 57104360 TGTTCACTTCAGTGGTCTG 57 57104298 57104318 AGCAGCCTTGTTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.2 ENSRNOG00000061395 ENSRNOT00000080105 1 1 1 60 1 156001022 156001040 TCACTGAGCCAGTGTACAC 59 156000980 156001000 TGCCCTCCACTAATATCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064232.1 ENSRNOG00000053673 ENSRNOT00000085187 1 1 1 60 6 70289597 70289615 AGTTGAAGAAGAGCCTGGA 58 70289639 70289657 TTCATCACCACGTCATGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.2 ENSRNOG00000046102 ENSRNOT00000075611 1 1 1 60 1 121202909 121202928 CTGATCAGTCAGGCTACTGG 60 121202868 121202887 GCTTTGGTTATACCCAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062766.1 ENSRNOG00000051824 ENSRNOT00000085861 1 1 1 80 6 7035996 7036016 AGTGAGCAACTAGGAGTCAG 59 7036058 7036077 AAAGGATGCCTTGCAAAGTG 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000060086 ENSRNOT00000091930 2 1 1 63 X 149156933 149156951 ATGGCAACAACAGCATAGG 59 149156888 149156906 ATTCTGACTTGTGCAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054184 ENSRNOT00000087899 1 1 1 60 9 79560195 79560214 GAGTTGGAATAGGAGCTTGC 59 79560237 79560255 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052285 ENSRNOT00000089539 3 1 1 60 6 21707448 21707467 GTCCTTTGTTCGTCCTAGCT 60 21707407 21707425 TCCTTGGCATAAGACAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2856.2 ENSRNOG00000061485 ENSRNOT00000081397 1 1 1 81 1 278163271 278163289 AAACACTATGGACTGCACC 58 278161668 278163229 GGTTTCCTGACAATTTATCCTG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035148 ENSRNOT00000053271 2 1 1 60 X 32102855 32102876 ATCTCACACCTGATTTCATCTG 58 32102816 32102836 AAGAACTAAACAAGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054554 ENSRNOT00000077271 2 1 1 60 9 40543301 40543322 ACTATACAGAGATCAGAGTGGT 58 40543341 40543361 GGAATGCGTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000054892 ENSRNOT00000079934 1 1 1 60 6 133826517 133826536 ACCGATGATGAGATCTGGTG 59 133826559 133826577 ATGTCTGGTTACTTGGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052274 ENSRNOT00000080290 1 1 1 60 1 5438034 5438053 CGCTACAAACAAGTCTCTGG 59 5437993 5438011 TCATGGTTGCCAGTACGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072061.1 ENSRNOG00000050797 ENSRNOT00000075044 3 1 1 68 1 263589024 263589042 TGAGATCCAGCTGTAAGGC 59 263588974 263588992 TGGTACCACCCACAATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061829 ENSRNOT00000083749 3 1 1 60 6 95871782 95871801 TTCGGTCAAGGGTATACGAG 59 95871741 95871759 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059638 ENSRNOT00000090904 3 1 1 60 3 139671390 139671409 ATAGGCTTGATTCTGCTGAC 58 139671349 139671368 GATGAATGCAGAGTGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061021 ENSRNOT00000081505 1 1 1 60 2 139539917 139539935 ATGAGGTTTATCCGAGGCG 60 139539875 139539893 AAGAGACATGAGGCTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.1 ENSRNOG00000039470 ENSRNOT00000060486 3 1 1 113 18 30568328 30568346 CAATGAGCCTTTCGTGCTC 60 30568466 30568484 CTTGAGCAGCTGGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008099.1 ENSRNOG00000048490 ENSRNOT00000071308 1 1 1 60 2 42830348 42830366 CCAGAGGGATCCATGAGAC 59 42830388 42830408 TTGCGAATATCCACATCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059410 ENSRNOT00000091516 2 1 1 60 9 74256132 74256150 TGTAGGTGGCAGAGAAGAG 58 74256171 74256192 AGATGTTCATAGGTCAGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059951 ENSRNOT00000087687 2 1 1 60 2 164737340 164737358 TGTGTCCATGTCAGTAGGT 58 164737298 164737318 TTGACAGGTCAGAACAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060759 ENSRNOT00000081187 3 1 1 62 X 40583960 40583979 TGTGTCAATAGGTGACAGAG 57 40584003 40584022 GTGCATAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000061003 ENSRNOT00000087570 1 1 1 62 2 67757638 67757656 ATACAACCCTGAATGCACC 58 67757594 67757613 TTAAAGTATGAACCAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014355.1 ENSRNOG00000060904 ENSRNOT00000090334 1 1 1 80 14 11546194 11546212 TTTGGCACGATCACAACTC 59 11546131 11546152 GCATGTATTCCTCCTAGTCGT 60 Novel Rattus norvegicus 81 AABR07014355.1 ENSRNOG00000060904 ENSRNOT00000090334 2 1 1 80 14 11546141 11546161 TGTCCAGTTACGACTAGGAG 58 11546080 11546098 AAGGCTGCTTATGTTTGCA 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000056717 ENSRNOT00000088756 2 1 1 60 3 8964879 8964897 AGTTGGAATAGGAGCTTGC 58 8964837 8964855 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054526 ENSRNOT00000083424 1 1 1 60 16 25145545 25145567 GGAACGATACAGAGAAGATTAGC 59 25145586 25145605 CTTGGCATTATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000061340 ENSRNOT00000078726 2 1 1 60 16 9730864 9730886 CTTAAAGCATTACTACCTCTGCC 59 9730826 9730844 TTGAAGCCAAGCATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059305 ENSRNOT00000087271 3 1 1 60 7 80863436 80863456 TGTCACATGTTTGTCAGTAGG 58 80863478 80863496 AGAACACTGAACACAGACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060944.1 ENSRNOG00000057963 ENSRNOT00000087546 3 1 1 93 4 101531419 101531825 GATCCAGGAAACCAGTGGT 59 101531881 101531900 TGACTTGCAAGAGATGGAGG 60 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000056049 ENSRNOT00000077522 1 1 1 60 6 133824894 133824912 GATGATGAGATCTGGTGGC 58 133824934 133824954 CAGATGTCTGGATACTTGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2787.1 ENSRNOG00000046036 ENSRNOT00000081605 3 1 1 60 1 271255324 271255342 GGTCATGAAGTGGTTCCAG 58 271255282 271255300 GTATTTGTGGGAGATGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035832.1 ENSRNOG00000055795 ENSRNOT00000084789 2 1 1 80 12 24091227 24091245 TACTTCACCGTTTCCACCC 60 24091287 24091338 AGTGGGTGTGATATAGTCTGC 59 Novel Rattus norvegicus 81 AABR07026489.1 ENSRNOG00000050405 ENSRNOT00000073064 2 1 1 60 16 78601627 78601646 CAGGTGGCTCATTTAGAAGC 59 78601668 78601687 GAAAGCCCATGTATAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057309 ENSRNOT00000091907 1 1 1 64 16 18063961 18063979 GTCTTCACTTTGGCAGCAC 60 18063915 18063937 CAGTGGTCATCCTAATATTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058770 ENSRNOT00000078452 1 1 1 60 2 218295955 218295975 CCTAAAGGTGTTGGAAGTGTG 59 218295997 218296015 TCCTCTTTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040918.2 ENSRNOG00000051839 ENSRNOT00000078839 2 1 1 60 X 114228876 114228895 TTCTAACAAGCTCCCTGGTG 60 114228835 114228854 CCTTACTCAGTGTCTGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046419 ENSRNOT00000075535 1 1 1 60 16 13842957 13842975 CCATACCACCATGAACGTG 59 13842915 13842933 GACAGCAAGACCCTATTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000059321 ENSRNOT00000082750 2 1 1 60 1 42477190 42477211 AATAGCCAAATCTGAGCATCAG 59 42477230 42477250 AACTATAGAGATCATGCACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135310.2 ENSRNOG00000041899 ENSRNOT00000063652 2 1 1 70 8 22050628 22050646 CGTGGGAAGCTAGAAGAGG 60 22050576 22050594 CGGAATTGAAGGACCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070185.1 ENSRNOG00000047152 ENSRNOT00000071014 2 1 1 60 8 56642226 56642245 CTCTGGAAGGTGATCGACTC 60 56642267 56642286 AGACTTACTCCTTACCCGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057627 ENSRNOT00000084922 1 1 1 60 8 49163047 49163066 GAGTTGGAATAGGAGCTTGC 59 49163089 49163107 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051497 ENSRNOT00000086254 1 1 1 60 4 13660073 13660092 TCTGTTACACTGTTGATCCC 57 13660115 13660133 ACACCTGCCTAATGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.1 ENSRNOG00000050816 ENSRNOT00000074447 1 1 1 60 4 114940934 114940954 GCCTTAAACTCAAAGATCCAC 57 114940976 114940994 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.1 ENSRNOG00000050816 ENSRNOT00000074447 2 1 1 60 4 114940934 114940954 GCCTTAAACTCAAAGATCCAC 57 114940975 114940994 GCTCATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.4 ENSRNOG00000055877 ENSRNOT00000083044 1 1 1 60 1 1669198 1669216 CATCAATGCAGAGCTTCCA 58 1669156 1669174 TGCCATGTTGAGAATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030779.1 ENSRNOG00000047029 ENSRNOT00000074339 2 1 1 61 10 104003790 104003808 GTCTGCGTGTTGTTATGCC 60 104003747 104003766 TATTCGTGGTGTCTGGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058964 ENSRNOT00000086880 3 1 1 60 4 17842434 17842455 GTCAAGGGTATATGAGTAGCTG 58 17842475 17842494 GGACCTTCAATCTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057950 ENSRNOT00000078409 2 1 1 60 1 152004307 152004328 GTGTTGCATATGCATCAGTAGG 60 152004346 152004367 GAACACTGAGTGTAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056685 ENSRNOT00000078691 1 1 1 60 6 18956394 18956416 ATCCAGTGAAGACTAGTATAGCC 59 18956433 18956454 GGAATGCTTCATAAGTTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056685 ENSRNOT00000078691 3 1 1 62 6 18956392 18956415 CAATCCAGTGAAGACTAGTATAGC 59 18956433 18956454 GGAATGCTTCATAAGTTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057752 ENSRNOT00000087231 3 1 1 60 2 185578729 185578747 ATATGGAGGCAGTACAGGT 58 185578687 185578705 AGTAGCCTCCTTCTACTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056646 ENSRNOT00000090634 2 1 1 63 2 26671224 26671242 TAAACCTGGCTTGACACAG 58 26671179 26671197 TTCAATTGGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062395.1 ENSRNOG00000043616 ENSRNOT00000068883 2 1 1 80 4 174283847 174283865 TGCCTTGTTGAAGGAAGTG 58 174283909 174283927 AGAGGGAATGCCACTAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA58 ENSRNOG00000059872 ENSRNOT00000088711 3 1 1 60 6 111468775 111468796 GAGTTCATGCAAGTTCTAACCA 59 111468736 111468757 ATGTTGGAGTACTGCAATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060933 ENSRNOT00000077622 2 1 1 62 1 56875278 56875299 GACAACTGAAAGTCAAGAACAG 58 56875237 56875257 CCTCAGGGTAATGTATTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060933 ENSRNOT00000077622 3 1 1 63 1 56875278 56875299 GACAACTGAAAGTCAAGAACAG 58 56875236 56875256 GCCTCAGGGTAATGTATTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059034 ENSRNOT00000077403 3 1 1 60 15 12840015 12840033 GTACATCAGTAAGTGGCGG 58 12840057 12840075 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767,ENSRNOT00000076749 2 2 2 82 7 115830003 115830358 TCCTTCAGAATGTGGTGAGG 60 115829940 115829958 ACTGTCCTCAAGCAGTGAC 60 Novel Rattus norvegicus 81 AABR07071161.1 ENSRNOG00000050528 ENSRNOT00000072472 1 1 1 113 8 102877430 102877450 TGGACCAGAGAAACACCTC 59 102877521 102877545 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07072237.1 ENSRNOG00000054404 ENSRNOT00000090804 1 1 1 80 11 60254054 60256232 GAGCAAGAATCAGAGTCTTCAC 59 60256270 60256291 GAAGATGGTAACGTTTCTTCCC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052991 ENSRNOT00000083905 1 1 1 60 3 114557006 114557025 TCCCTTGCTATTGAGATGGA 58 114556965 114556985 CCACTATCACAAGTCATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058095 ENSRNOT00000086319 1 1 1 60 4 116894021 116894043 AGAGAAGCTATGTCTACAGTGTG 60 116893983 116894005 GATGTTAGGCTACTGATCATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_0730.2 ENSRNOG00000060951 ENSRNOT00000086267 3 1 1 81 3 66404641 66436586 GGCTTTCTAAAGGTGGTCC 58 66403370 66403388 TGCTGCCTACAAGGTAGAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053912 ENSRNOT00000087807 2 1 1 63 4 76229736 76229755 CTTTACAGGTGTGGTTGCTC 59 76229692 76229712 AGACATAGACTGTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054234 ENSRNOT00000085855 1 1 1 69 4 101750153 101750171 ACCACCTACAGGTATAGCA 57 101750102 101750120 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051761 ENSRNOT00000089503 2 1 1 60 9 77004824 77004842 TTAGCCAACCAATTGCGAG 59 77004782 77004802 GAAGCTCTAATCACATGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057041 ENSRNOT00000081931 1 1 1 60 1 136805690 136805708 ATCCTCCAAACAAGCTCTC 57 136805732 136805750 TTAGAGGTCTGTGCTACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069599.1 ENSRNOG00000009373 ENSRNOT00000012585 2 1 1 60 8 33075579 33075600 TGTTGTGAAATACAGTCCACAG 59 33075618 33075639 CAAGATATCCACTGGGTTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052674 ENSRNOT00000085834 2 1 1 60 4 145319838 145319862 CAAGTGCAGTATCTGTTCTTATCAG 60 145319877 145319898 TATTGTCCTCAGATAGAGGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.1 ENSRNOG00000036549 ENSRNOT00000054654 3 1 1 61 9 27678682 27678700 CCACAACCAGCATAGTCAG 58 27678724 27678743 AGGCGCTCAAAGAGATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059471 ENSRNOT00000090167 2 1 1 60 4 179738579 179738597 TGTTATGTCACATGTGCGT 58 179738616 179738639 CATAACGGAGTATAGACATACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027496.1 ENSRNOG00000021752 ENSRNOT00000039482 1 1 1 93 17 34225082 34225100 GTCATGGAGGTTGGAATGC 59 34225006 34225024 AGGCACATTTGATGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 1 1 1 74 15 44329525 44329560 GAAACAAGCCGAGACACAG 59 44329598 44329616 CTTGGATCATGTCCCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071848.1 ENSRNOG00000060610 ENSRNOT00000078193 2 1 1 60 1 12952688 12952709 TACGGAGGTCTTAATTTATGGC 58 12952649 12952668 CTGAAGCATCCATTTAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061313.1 ENSRNOG00000060883 ENSRNOT00000090571 2 1 1 123 4 116109615 116109633 CACTCATCCTTTGGCACAG 59 116107174 116107193 ATAAGTAGGCAGCAACTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061313.1 ENSRNOG00000060883 ENSRNOT00000090571 3 1 1 123 4 116109615 116109633 CACTCATCCTTTGGCACAG 59 116107174 116107192 ATAAGTAGGCAGCAACTGC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000061134 ENSRNOT00000077411 2 1 1 60 4 132337467 132337488 CCTGCTACAACCTCTAAATCTC 58 132337428 132337449 GAAGTGAGTAGATTTCAAGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011857.1 ENSRNOG00000045839 ENSRNOT00000074961 2 1 1 80 2 172896031 172896054 GAGATTTCACCTCACATGCG 59 172896096 172896115 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07066516.1 ENSRNOG00000031079 ENSRNOT00000043571 3 1 1 80 9 10208798 10208820 ATGTTTGACTCCCAGATCCA 59 10208737 10208755 CTCCTTGTCAATGAAGCCG 59 Novel Rattus norvegicus 81 AABR07072558.1 ENSRNOG00000052378 ENSRNOT00000079561 3 1 1 87 17 45070825 45070844 CATTCTCAACCTGTGGATCC 58 45070893 45070914 GTGGAATGGTTAGGACTCAC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000057480 ENSRNOT00000088934 2 1 1 62 1 111037575 111037597 GGAAGATAGCATGATCACAAAGG 60 111037535 111037558 CATCTGAAGTACAATGACCATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 3 1 1 70 2 196582607 196582939 AGAAAGAGGAGGAAGAGGAG 58 196582556 196582575 TTTCCCTTCATCTTCCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016779.1 ENSRNOG00000052764 ENSRNOT00000083199 1 1 1 76 14 114047342 114047365 GAGTGCAAGATAGAGTATGAAGAC 59 114029244 114029262 TTGATTTCATGCATCCGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060754 ENSRNOT00000084515 3 1 1 60 X 74936889 74936909 CTATGTCTGTCTATGCTCAGC 58 74936849 74936870 TGTTAGGCTACTAACCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054541 ENSRNOT00000082881 2 1 1 60 2 95306961 95306980 TGTCAGTAGGTGGCATAGAG 59 95307002 95307021 ATGTTCATAGGTCAGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063346.1 ENSRNOG00000051471 ENSRNOT00000078660 1 1 1 80 6 29518418 29518436 GATGGAGTCAGAAGCTGAG 57 29518480 29522268 CTATACACTGCTTTCGCCA 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000040749 ENSRNOT00000062502 2 1 1 60 3 160548731 160548752 TCTTAGAAGCTAAGCACAAACG 59 160548692 160548710 GGTATTCCCAGATGGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063601.1 ENSRNOG00000051657 ENSRNOT00000077176 3 1 1 83 6 36889040 36889062 AAGGACACTCATCGGTGTC 59 36888975 36888995 AACTAGAAAGGAAGGTTTGCG 59 Novel Rattus norvegicus 81 AABR07012312.1 ENSRNOG00000058195 ENSRNOT00000072379 1 1 1 270 2 192941454 192941472 TGTGTCTTCCTGCTGTAGC 60 192941201 192941219 AACAGCAGTCTCCAGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000054952 ENSRNOT00000087377 3 1 1 60 10 32973037 32973059 ATGTCCTGATTCCTAAGATCTCC 59 32972999 32973020 ACTTCAACAATCTATGCAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0488.1 ENSRNOG00000051263 ENSRNOT00000077062 1 1 1 80 14 48633991 48634011 ACATTGTGGTGAAAGTTGTCC 59 48630327 48633952 GTTGGAGCACTATAAACCTCTC 59 Novel Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000080281 3 1 2 81 1 48323237 48323258 ACATCAGCAACAACAGTAACTG 60 48323633 48323655 CTGTTGTCACTGTTGTTGCT 59 Novel Rattus norvegicus 81 AABR07061871.1 ENSRNOG00000030647 ENSRNOT00000052259 2 1 1 60 4 150199655 150199677 CTCAGATGAATGATGGATCTCAG 59 150199695 150199715 ATTTCTGAATCATCCGACGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546,ENSRNOT00000057756 3 2 5 80 6 115116587 115116606 AGGGTATTAAACGGAACAGG 57 115103949 115116544 GAAAGGTATGGAGCTGGAC 58 Novel Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076700 2 1 3 166 6 104437375 104467487 GTCCCAGAAGATCGGTGTC 60 104467617 104475047 GGAGTAGCTTCACCAGTGG 60 Novel Rattus norvegicus 81 AC106510.1 ENSRNOG00000036434 ENSRNOT00000054546 3 1 1 60 2 44897530 44897548 GGGTTAAGTAAGCAGCCAC 59 44897570 44897590 ATTAACAAGAAGACCCGTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053726 ENSRNOT00000078749 3 1 1 63 1 194926724 194926743 AAACATTGCTTGGAAAGCAG 58 194926680 194926698 CAGTCACGATGATAGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112093.1 ENSRNOG00000060743 ENSRNOT00000091860 1 1 1 60 1 216773924 216773944 TGCTTCAGTAATAAAGGCCTC 58 216773884 216773903 GAGACACATAAAGGACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052747 ENSRNOT00000091868 1 1 1 60 4 106622000 106622021 CCAGTTGTGACAACTGTATCAC 60 106622039 106622060 AATAGTGGACCTAAATCTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054470 ENSRNOT00000078716 2 1 1 60 1 192400859 192400878 TGTTCCCAGAGCATCATACC 60 192400898 192400919 GACAGGTATATGTGTTCCTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060533 ENSRNOT00000086638 2 1 1 60 14 27392160 27392183 GTAAGTGTCATAGAAGACAGAGGT 60 27392200 27392220 TTGATAGCTCAGAACACTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000061622 ENSRNOT00000081692 3 1 1 60 10 106022198 106022219 CTTGACCTAAAGTAAATTCCCG 57 106022237 106022258 CTGTTACTGCAAATTCAAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008025.1 ENSRNOG00000032097 ENSRNOT00000050574 2 1 1 60 2 39507495 39507513 CAAGTCCAAGAACCACACC 59 39507536 39507555 CTTGATGTCATTTCTGTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051926 ENSRNOT00000084810 1 1 1 60 14 43500180 43500198 TCATCTCACTGATTGCCGT 59 43500220 43500240 GGGAGGACATTTATCTAGCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054334.1 ENSRNOG00000048734 ENSRNOT00000073448 3 1 1 61 3 148589612 148589633 TGAAACAGGATATCTCTGTGAC 58 148589653 148589673 GCTAGCCTGAGCTACATAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058499 ENSRNOT00000090005 3 1 1 60 2 60002230 60002252 CTGGCTACAACATCAATCATCTG 60 60002272 60002290 AGCCAGTCAGATCAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053299 ENSRNOT00000078406 3 1 1 60 14 65733040 65733060 TGAAGCAGCTGATACTTTAGG 58 65733081 65733100 GCTGTGAACTGTTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061470 ENSRNOT00000085919 1 1 1 60 2 185663517 185663535 GGAAGCATGATCTCAGAGG 57 185663559 185663577 GCATCTGAAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050622 ENSRNOT00000071073 2 1 1 60 17 53714715 53714734 TGAACACATCCCATCTTGTC 58 53714754 53714775 AAGTAATAACCAGGCTTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000056978 ENSRNOT00000087390 2 1 1 66 12 40881505 40881523 TTTGGATTTATGGCAGGCC 59 40881457 40881475 GACACAGGTTGCTCTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060828 ENSRNOT00000078808 1 1 1 60 2 251466908 251466926 GAGAAGATTAGCATGGCCC 58 251466866 251466884 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016619.1 ENSRNOG00000059730 ENSRNOT00000091331 3 1 1 60 14 107180041 107180063 GTGAAGGAAATATACAAGGCTGG 60 107180080 107180101 AATGTTTGCTCTTGATTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006866.1 ENSRNOG00000055976 ENSRNOT00000078379 2 1 1 173 1 261073538 261073556 CTACAGCTACACGCAAAGC 59 261073697 261073715 TAGGTTGTTAGCTGCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060377 ENSRNOT00000086528 2 1 1 60 17 26541296 26541316 GTGTCTCCTTTCTCCTTTCCT 60 26541335 26541356 TCTCCTTTAACCAAGTGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000051585 ENSRNOT00000083071 2 1 1 61 12 30499745 30499763 CAGTGAACACCCAAGTGTG 59 30499702 30499723 GACTTTACTCTAGCACAGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 3 1 1 65 5 168845244 168845304 GCTGAAATCACCATCTTTGGA 59 168845330 168845349 CATAGCTCTTTGGACTCCGT 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_14_0449.2 ENSRNOG00000051316 ENSRNOT00000076753 1 1 1 60 14 45025520 45025539 ATCAAGAGAAGTGGTGGAGG 59 45025561 45025580 AATGCTGTCTGGGTAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044596.1 ENSRNOG00000057037 ENSRNOT00000083453 3 1 1 60 20 12365519 12365541 CTGAGATCTCACCATGCCA 59 12365477 12365496 CTTCTTGACCCACTTCACAG 59 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000051807 ENSRNOT00000090392 3 1 1 79 12 695175 695193 TGAGGCTGCTATGTCACAC 60 695114 695132 TGTTAGGCTACACCGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061964.1 ENSRNOG00000057550 ENSRNOT00000090279 2 1 1 60 4 155206292 155206313 CAGGTTTCTCTTTGAAGGTCAG 59 155206333 155206352 CATTCCCAGTTCTTTCGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041998 ENSRNOT00000063751 1 1 1 60 10 3399558 3399579 CCTTGATTATGACCAATCACCT 58 3399519 3399537 TATTAACCAGGCCCTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054983.1 ENSRNOG00000056555 ENSRNOT00000078261 2 1 1 82 3 177397945 177397963 TTTGCTGGATCCTTCACAG 58 177398008 177398330 AATTGTAGCCTACAGCAGTG 58 Novel Rattus norvegicus 81 AABR07013065.1 ENSRNOG00000055846 ENSRNOT00000078914 2 1 1 81 2 220833133 220833151 CACATGGCAGTCTTGTACG 59 220817242 220833088 AAATTCAATGCAGGCCCAG 59 Novel Rattus norvegicus 81 AABR07058899.1 ENSRNOG00000053802 ENSRNOT00000086780 1 1 1 88 7 142062871 142062889 GGTGCAGAACTGGTTTGAC 59 142062943 142062961 CTTGAGTGTCCTCTCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 1 1 1 85 2 221659343 221659361 AATATGGTTCACTGCGGTG 58 221659410 221659432 CAAACTGCACAGCCAAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000051852 ENSRNOT00000089035 1 1 1 66 2 198622171 198622189 TTATCCATTGCACTCCGGA 59 198622123 198622141 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058043 ENSRNOT00000082724 2 1 1 60 14 31554882 31554903 GTCAAGGGAATACAAGTAGCTG 59 31554843 31554861 AACTCGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076322 3 1 2 80 X 70456912 70456930 GGAACTTGCTGTGTAGACC 58 70446740 70456871 CAGTCTCAGACACTTTAATCCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053421 ENSRNOT00000086197 2 1 1 76 12 9597069 9597087 CTTAGAGGTACCAGTGCAG 57 9597127 9597145 AGTGTAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053880 ENSRNOT00000088346 1 1 1 60 1 6440084 6440104 AGGATCTGTCCTAGTAAAGGG 58 6440125 6440144 ACTGTAAACAAGGTTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057436 ENSRNOT00000090132 3 1 1 60 1 139604455 139604473 TTCTCAATGTGCTGACCCT 59 139604413 139604432 ACAATCCATCCAGCTGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052457 ENSRNOT00000088539 1 1 1 65 17 87158251 87158269 ACCTCAGCAGCATATACCA 58 87158298 87158316 TTGCGTGTCATTCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045369 ENSRNOT00000070636 1 1 1 60 1 29352847 29352866 CATCTTAGTGCTTTCGTGGT 58 29352888 29352907 GAGCTGCTGTCTATATTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057818 ENSRNOT00000085353 1 1 1 60 1 178184124 178184142 GAGAAGATTAGCATGGCCC 58 178184166 178184184 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057818 ENSRNOT00000085353 2 1 1 60 1 178184118 178184139 GACACAGAGAAGATTAGCATGG 59 178184160 178184178 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052046 ENSRNOT00000085375 3 1 1 60 14 9916348 9916370 GATACAGAGAAGATTAGCATGGC 59 9916310 9916328 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059329 ENSRNOT00000091975 2 1 1 67 1 135581393 135581411 CTTATCCATTGCACTCCGG 58 135581344 135581362 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058945 ENSRNOT00000086686 1 1 1 82 14 113190855 113190873 GTAAGGTCACCCAATGCAC 59 113190791 113190811 GGGCAATATGAATAACACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844 3 1 2 80 13 78982551 78985135 TTCCTGAAGCAGACAAGGA 59 78982489 78982508 GTGTTCGTCATTACTGGCTG 59 Novel Rattus norvegicus 81 AABR07015596.1 ENSRNOG00000048944 ENSRNOT00000071542 1 1 1 60 14 65152763 65152781 CTGCCTATGACTACTCCGT 58 65152721 65152740 GCTCCAGTCACATTACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055074 ENSRNOT00000082472 3 1 1 60 6 80132279 80132297 AGTTGGAATAGGAGCTTGC 58 80132319 80132339 TGGAAATACTGCAATACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043875.1 ENSRNOG00000058801 ENSRNOT00000090416 1 1 1 60 19 45386115 45386139 GAGTGATGCCTGTATTTGGA 58 45386162 45386180 CACACGTACTTGCAGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000061445 ENSRNOT00000090396 1 1 1 60 1 116731207 116731230 GCTAGAATAAATCTTGTGGGATGG 60 116731170 116731191 GCCTCAGTGTAATCCTATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053390 ENSRNOT00000085446 3 1 1 60 4 11558130 11558148 ATGCTTCAGTAAGTGGCAG 58 11558171 11558190 CACAGGTTAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044767 ENSRNOT00000070034 3 1 1 60 4 125508149 125508168 ATCTCAGAAGCTAAGCAGGG 59 125508108 125508128 TTACTCCTTCATTCTCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061133 ENSRNOT00000081008 3 1 1 60 4 102876844 102876865 CATTGCAGGTATGTCATATGAG 57 102876805 102876823 CATTTGCATAGCCTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061491 ENSRNOT00000084575 1 1 1 71 4 66286622 66286640 ATGGTGCTCACTCATACAC 57 66286569 66286587 CATGTCCTCTTTGTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059280 ENSRNOT00000079657 2 1 1 61 5 136071242 136071263 CAGATCGTATAAATCTTTCGCC 58 136071284 136071303 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000054708 ENSRNOT00000088778 2 1 1 64 3 35389853 35389874 GATTGATCACAGTCAGTTACAG 57 35389810 35389828 TGGAGTAGTGAGAAGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047835.1 ENSRNOG00000023101 ENSRNOT00000038090 2 1 1 80 5 49821973 49821992 AGACCTTATGGCATACAGGC 60 49822031 49822055 GTAATGTCAATCAGCTCCTTCAC 60 Novel Rattus norvegicus 81 AC097183.1 ENSRNOG00000036856 ENSRNOT00000055314 3 1 1 89 5 173565629 173565647 CACCCTACCACCAGAACAG 60 173565702 173565720 CACTGAGCCAGGAGTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012342.1 ENSRNOG00000050472 ENSRNOT00000049525 3 1 1 60 2 194084454 194084472 AACATGAAATGCAGGAGCG 59 194084412 194084430 ACTTGCAGATGAATGTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059272 ENSRNOT00000083392 1 1 1 60 5 136057609 136057630 CAGATCGTATAAATCTTTCGCC 58 136057650 136057669 ACTCAGAATTGTTCCTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000055831 ENSRNOT00000088005 3 1 1 60 1 110521696 110521714 TAGCTGTTGGTTTCAAGCA 58 110521735 110521756 AGAATAGCCAACAAACTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056604 ENSRNOT00000091059 2 1 1 60 14 92144131 92144150 AGTCTAGGCATGTTAACCCG 60 92144090 92144108 CACAAGTCATGCAGCTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009373.1 ENSRNOG00000011429 ENSRNOT00000015194 3 1 1 88 2 94903192 94903210 AACTTACCAGAGGGAGCAC 59 94903053 94903140 TCTTTCATGACGCTGAGCA 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000061255 ENSRNOT00000090995 1 1 1 60 1 85051968 85051988 TTAAACGTGAACGACACAGAG 59 85052010 85052028 TCAAGTTTGAGAGGCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000051593 ENSRNOT00000085190 3 1 1 81 1 116994489 116994509 GGGTCTATGTCGATGATAGCA 59 116994428 116994449 CCTCAGCGTAATACTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000084349 1 1 5 80 2 123562585 123564851 TGTTTGGCTTCTTGTTGACAG 60 123564890 123564911 CAGACTTCATTGGCTAATCAGC 60 Novel InUTR Rattus norvegicus 81 AABR07040938.1 ENSRNOG00000005402 ENSRNOT00000007173 2 1 1 84 X 115269631 115269650 CGATTTGACCGAGATTCTGG 59 115269695 115269717 CACATAGTCCCTTGGTAGAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050757 ENSRNOT00000073405 3 1 1 60 12 25307577 25307595 TCTCAGAAGCTAAGCAGGG 59 25307535 25307555 ACCTAATACTTCCTGGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056749 ENSRNOT00000086163 1 1 1 60 14 82124655 82124676 CTGAGCAAGATAATCTGGACTG 59 82124616 82124636 TGGTATTCTGTTGTCCATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056117 ENSRNOT00000082807 1 1 1 60 14 56222776 56222794 TGGTTCTTGTGTCACATGG 58 56222734 56222754 TGCTGAGCATAGACATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058354 ENSRNOT00000082373 2 1 1 61 6 47627165 47627185 TGATTCAGAGAAGATCAGCAC 58 47627124 47627142 GAGCGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056841 ENSRNOT00000081381 1 1 1 60 6 110820552 110820571 GACTAGACTAGTGTCTCCCT 57 110820593 110820612 ACTGTGTACCTTCAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055235 ENSRNOT00000083133 1 1 1 60 1 40672930 40672948 CAACTGTGGGAAACTCGAC 59 40672972 40672990 GGAGACAGGGTGAATGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065139.1 ENSRNOG00000053311 ENSRNOT00000087462 2 1 1 80 6 111540163 111541613 TTGCATATCAAGCCTGTGC 59 111541656 111541675 GTACTGGACAAAGTCCATCC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000053008 ENSRNOT00000091396 3 1 1 60 10 96050506 96050525 TTCGGTCAAGGGTATACGAG 59 96050465 96050483 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054969 ENSRNOT00000087399 1 1 1 60 14 7579676 7579694 CTTACCCATTGTCCTCTGG 57 7579634 7579653 AGTTACTTTCTCACAGTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053080 ENSRNOT00000077464 2 1 1 60 6 5646421 5646439 CTGAGTCTTGGAGTTTCCC 58 5646462 5646481 ATCCCACTACCACAAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059132 ENSRNOT00000088699 2 1 1 60 3 139747582 139747600 TCCCAGAGGCATAATAGGT 57 139747540 139747558 ATACAGCCTGTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059609 ENSRNOT00000089753 3 1 1 62 2 96521607 96521625 CTGTCAGTAGGTGGCAGAG 60 96521648 96521669 TTATTCATGGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000055387 ENSRNOT00000080795 2 1 1 69 1 85407597 85407615 TGAACCAGTGGACAAAGAC 58 85407546 85407564 ACAATGAGTTCTGGGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055108 ENSRNOT00000086981 3 1 1 60 1 109182497 109182519 GATACAGAGAAGATTAGCATGGC 59 109182459 109182478 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035260.1 ENSRNOG00000047251 ENSRNOT00000074111 2 1 1 60 12 8874006 8874025 CTGAACTCAGAGATTTGCCT 58 8873965 8873984 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051549 ENSRNOT00000086347 1 1 1 60 12 25779620 25779641 CTAAGATTGGAACAACACAGAG 57 25779659 25779680 TGAATATGAGTGTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0865.1 ENSRNOG00000051045 ENSRNOT00000075984 1 1 1 87 13 81521220 81521238 TTCCTGAAACCTGACACCA 59 81518468 81521171 GTGAAAGAGCATCTGTTAGGA 58 Novel Rattus norvegicus 81 AC114845.1 ENSRNOG00000058760 ENSRNOT00000082637 3 1 1 73 14 22785249 22785267 CTCCAAGCTCAAAGGACCA 60 22785190 22785212 CCATCTCTTTCTTTAGGTTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059397 ENSRNOT00000089397 3 1 1 83 3 20467477 20467497 CAGCACGTGTACTTAAATTGG 58 20467414 20467434 GGAATGCTTCATGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000053533 ENSRNOT00000085450 1 1 1 60 1 252923336 252923355 AAAGTGATTGTAGGTTGCCA 58 252923295 252923313 CTTTCTGCATCCTCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128476.2 ENSRNOG00000057782 ENSRNOT00000080865 3 1 1 60 7 121135656 121135675 ATCAAGTCCTTCCTGTCCTG 59 121135698 121135716 CACACCTGTCCTTACTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058966 ENSRNOT00000089090 2 1 1 60 2 211233189 211233209 GATATCTTTCATCCTGGGTCC 58 211233231 211233249 CACTCCAAAGGAGGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.6 ENSRNOG00000059778 ENSRNOT00000088305 2 1 1 80 15 30841195 30841385 CAGATTTGCTGGGTGAGAG 58 30841429 30841447 CAGAACAGAACTGGTTCCC 58 Novel Rattus norvegicus 81 AABR07019512.1 ENSRNOG00000046236 ENSRNOT00000074277 3 1 1 60 15 107486669 107486687 ACTGTCCATCCTCAGACTC 58 107486711 107486729 CTATGACCATATGCCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057299 ENSRNOT00000091948 2 1 1 60 10 73986112 73986130 ACTATTCTGTGCATGTCCC 57 73986151 73986172 AATGACTGTCCTCTTTAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056677 ENSRNOT00000079286 2 1 1 60 5 90533591 90533609 ATAGCTGCTGTGTCATGTG 58 90533629 90533651 GAGCATTGACATAGTCTCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD15 ENSRNOG00000052293 ENSRNOT00000085357 3 1 1 60 1 164440349 164440367 GTTCTGTGGCACAGTTGTG 60 164440307 164440326 GCCTCTTGGTCATCTTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056695 ENSRNOT00000081071 3 1 1 60 1 228358084 228358102 ATGTGTCAGTAGGTGGCAG 59 228358042 228358061 ATAGGTCAGAACACTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132028.2 ENSRNOG00000057419 ENSRNOT00000089105 3 1 1 60 3 77961301 77961320 AGAGCTCACAGTTCTGAAGG 60 77961260 77961279 CTGTAATGTGGGATCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059141 ENSRNOT00000087189 1 1 1 60 5 33274448 33274466 TTCCGTCAAGGGTATACGA 58 33274490 33274508 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058635 ENSRNOT00000086372 1 1 1 60 3 165667558 165667576 TGTAGGTGGCAGAGAAGAG 58 165667516 165667536 TCAGGTGTTCATAGGTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053442 ENSRNOT00000089159 2 1 1 60 6 133824029 133824049 GACCAATGATGAGATCTGGTG 59 133824070 133824089 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 2 2 4 62 9 88280199 88282536 TTTGATGGACCTCCAGGTC 59 88280155 88280173 ACATCTCATACCAGGAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058025 ENSRNOT00000078242 2 1 1 77 1 239184575 239184594 CTAGAGCATTGCAGATGTGG 59 239184517 239184535 AGCGTAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068007.2 ENSRNOG00000054475 ENSRNOT00000089203 1 1 1 80 9 77006317 77006339 CAGAGTCTCCTATGAGTACGA 58 77006381 77006399 GAGAGTTCCCTCTCCACTC 59 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000057181 ENSRNOT00000090452 1 1 1 60 3 112236306 112236325 GGGCTACACATTTAAAGCCA 59 112236265 112236286 ATCAGCCATCTTAAAGGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055876 ENSRNOT00000087417 2 1 1 60 9 67474113 67474133 TACCCTGTGTATATCTCAGCC 59 67474073 67474094 TACCCATTCACAATACAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017824.2 ENSRNOG00000051728 ENSRNOT00000092182 1 1 1 67 15 31417215 31417233 CTAGGCCTTCACCTGTCTG 60 31417401 31417419 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016883.1 ENSRNOG00000057354 ENSRNOT00000088531 3 1 1 62 15 3267471 3268314 CTGCATTCATATGAATGGACAC 58 3268541 3268562 TAGCTTTCTCCATTCCTTTGTC 59 Novel DesignRelaxed Rattus norvegicus 81 AC141526.2 ENSRNOG00000060188 ENSRNOT00000087927 2 1 1 60 1 89007631 89007650 TCAGAGGCACAGAATTAGGC 60 89007673 89007691 TCAGGAGGACACAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027799.1 ENSRNOG00000056731 ENSRNOT00000077512 2 1 1 60 17 44420025 44420045 GCTTATTGACTTTGGACTCAG 57 44419985 44420006 TGTCTGAATATACTTCACGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060176 ENSRNOT00000086304 2 1 1 60 5 78482976 78482995 AATGAGGTTTATCCGAGGCA 59 78483017 78483036 AGGTGACCTACACCTCTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000061755 ENSRNOT00000086489 3 1 1 64 1 3952654 3952672 TTGAGTTCAGTTCAGGGCA 59 3952608 3952626 CAGCCAATTTCCATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058630 ENSRNOT00000085569 1 1 1 60 6 93920688 93920708 TGGTCAAGGGTATATGAGCAG 59 93920648 93920668 GTCTGAGAGCTTGTTTGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.2 ENSRNOG00000041608 ENSRNOT00000063361 2 1 1 60 1 84017172 84017190 GTCAGGGAGGCATAGTGAG 59 84017212 84017232 GGGCTACATAGTAAGACTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045327 ENSRNOT00000070594 2 1 1 60 1 87611965 87611983 CAGAAGCTAGCAGGGTCAG 60 87611923 87611942 CCTCACTCAGTATTCCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115371.2 ENSRNOG00000052228 ENSRNOT00000089954 2 1 1 60 15 33479225 33479243 TCAACAGTTCGCTTAGGCA 60 33479264 33479285 CTTCCCTTGTTATTGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065531.2 ENSRNOG00000047180 ENSRNOT00000074902 3 1 1 64 6 133709575 133709593 GTGCTAATTGTGGCTGAGC 60 133709619 133709639 GTATCACCAGGAGATCATGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029198.1 ENSRNOG00000056896 ENSRNOT00000081217 3 1 1 82 10 12947538 12947833 CCGAAAGGACCACAAACAC 59 12948113 12948132 TTAGAACTGTCACCACAGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052986 ENSRNOT00000084926 2 1 1 79 7 70701303 70701323 CTTACTTCACAGCACATTCAC 58 70701244 70701262 TTTGTGCGTCATACTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031150.1 ENSRNOG00000058829 ENSRNOT00000081315 2 1 1 60 18 1758527 1758546 AGAAGATGTACTGGGAGGTG 59 1758569 1758588 CTCTTTAACAGGCAGATCCA 57 Novel DesignNoJunction Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000077057 2 1 3 99 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208419686 208419704 GGTGACACTTACCCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000054518 ENSRNOT00000079318 1 1 1 100 14 16471870 16471890 AGCCAGTTAAGCTAATCAGGT 59 16471790 16471808 CATACAAGCAACAGGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056380 ENSRNOT00000077501 3 1 1 70 4 101489068 101489087 TACCACCTACAGGTATAGCA 57 101489017 101489035 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304,ENSRNOT00000075256 2 2 2 94 2 208392613 208392632 TTTGTGTACTGATTAGCGGG 58 208392689 208393215 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000056809 ENSRNOT00000083140 2 1 1 60 13 108532342 108532360 CCTCTACTCCAGAGATGCC 59 108532382 108532402 AAGTCATGTAGTTGCTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050149.1 ENSRNOG00000047722 ENSRNOT00000073375 1 1 1 60 5 153549758 153549777 TTGAACTCAGAGATCCACCT 58 153549717 153549736 GCAACACATCCCTTTAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004971.1 ENSRNOG00000054215 ENSRNOT00000081955 2 1 1 80 1 172971928 172971948 CTGCAGTCACTTTGTTCTACG 60 172971990 172972012 CCACCTTGTTGTCTGTGGA 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054198 ENSRNOT00000085700 1 1 1 60 4 93723024 93723044 ACACATGTATCAGTAGGTGAC 57 93722984 93723003 GGCCAGAATACTGATCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060805 ENSRNOT00000091199 1 1 1 84 5 81732281 81732301 CTGCACTTATTTCAGAAGCAG 58 81732217 81732235 ATTTGTGCCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057276 ENSRNOT00000087010 2 1 1 60 2 62094691 62094712 TACAGGGAAGATTAGCATGGTC 60 62094730 62094751 TGGAACCCTTCATGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000058803 ENSRNOT00000087736 2 1 1 61 1 56873040 56873061 GACAACAGAAAGTCAAGAACAG 58 56873000 56873020 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028839.1 ENSRNOG00000059656 ENSRNOT00000081311 3 1 1 97 17 88037336 88037356 AATTTCCAAGACTCCTCCCTG 60 88037415 88037435 CCACTTCCAAAGCAGAACG 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000058078 ENSRNOT00000090487 1 1 1 60 13 105109972 105109991 AGCCAATTAAACCAGTCAGG 58 105110014 105110032 GTTTATGGCCCTTGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.3 ENSRNOG00000054164 ENSRNOT00000085845 2 1 1 80 X 123821815 123822096 GTTTATGAGAAAGGAACCTGGA 58 123821756 123821774 ATTTCTTCTGGTCCACTGC 58 Novel Rattus norvegicus 81 AABR07054845.1 ENSRNOG00000049107 ENSRNOT00000070970 1 1 1 76 3 171784406 171784424 CTTCTTCGTCCAGGTCAGG 60 171784348 171784366 TTCAAACTCCGAAGACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055296 ENSRNOT00000080947 2 1 1 60 4 93878947 93878965 CCACCTACAGGTAAAGCAG 58 93878905 93878924 CTTCTATGCCACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290,ENSRNOT00000031927 1 2 3 89 X 73504777 73504795 AGACAACTGCCAGACAGTC 60 73504847 73505717 CATTAAGCTGTGCCATTGCA 60 Novel Rattus norvegicus 81 AC123213.1 ENSRNOG00000048422 ENSRNOT00000074750 2 1 1 60 4 153354002 153354020 GCCTGGTCTACAGAGTGAG 59 153353960 153353979 TTCTACACAGGGTTTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055214 ENSRNOT00000083311 3 1 1 60 7 16079654 16079675 CTATAAGTGTTGCAGATGTGGC 60 16079615 16079634 CTCTTCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.1 ENSRNOG00000051739 ENSRNOT00000082031 2 1 1 80 4 102489954 102490089 CTGGACATCAGGTATACAGTG 58 102490129 102490149 GAAACACTTTCTCCAGGAGAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061817 ENSRNOT00000086901 1 1 1 60 13 94121993 94122012 GTCACATGTACAGCTGTAGG 58 94122035 94122053 GAGAGCACTGAGCATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058896 ENSRNOT00000077643 3 1 1 60 6 30630937 30630955 ATGAAGAACGCAGCTAGCT 60 30630978 30630997 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019386.1 ENSRNOG00000052579 ENSRNOT00000090448 3 1 1 68 15 103440980 103440998 CATGAACGCCTTCATGGTG 60 103440930 103440949 TGCATCTTAGGGTTCTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054365 ENSRNOT00000089363 2 1 1 61 5 155389135 155389153 GAGAGGCAATGGTTAGGCT 60 155389176 155389196 CTCTCAGGCTCATTTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020815.1 ENSRNOG00000058034 ENSRNOT00000078185 2 1 1 60 13 42220346 42220365 CTCCGACACCTTCTTCTACC 60 42220386 42220406 AGAAGACACGTTGTAGAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058934 ENSRNOT00000088886 3 1 1 60 5 25546339 25546358 TGGAAGTCCATTTGTAGGAG 57 25546381 25546399 TAAACGGATCTGGAACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000060589 ENSRNOT00000086222 2 1 1 60 6 23448740 23448761 TTGCTGTGATGACTTTCATTGG 60 23448701 23448719 AGAGAAGAGGCATCATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052435 ENSRNOT00000082238 1 1 1 60 20 46568859 46568878 TACCCTGAAGCTACTTGCTG 60 46568818 46568838 CTTAACCAAACACTGGCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054189.1 ENSRNOG00000033100 ENSRNOT00000044465 1 1 1 60 3 143828761 143828782 AACTTTGCCAAATACTTCCTCC 59 143828802 143828821 TCAGTTTCTCAGCATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029803.1 ENSRNOG00000057038 ENSRNOT00000089390 1 1 1 80 10 52023657 52023679 AGATTTCACCTCACATGCG 58 52023595 52023614 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000057388 ENSRNOT00000082147 2 1 1 60 14 14198171 14198190 TGAGGTTTATCTGAGGCACG 60 14198130 14198152 CACCTATCCATTTGGGAATATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017855.1 ENSRNOG00000053749 ENSRNOT00000092202 2 1 1 80 15 31895257 31895456 GGCTCCAATTAAACTGGGT 58 31895500 31895518 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 AABR07060994.1 ENSRNOG00000060746 ENSRNOT00000079277 3 1 1 81 4 102351072 102351478 TGGATTCCTGCTTCCAGAG 59 102351522 102351541 TAGAGGTTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000057896 ENSRNOT00000084967 3 1 1 60 3 58785384 58785404 ATGGGTTTGGATTTATGGCAG 59 58785344 58785365 CTCTAGCATGGGATACTATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055243 ENSRNOT00000091158 2 1 1 60 3 152392177 152392195 TGTTCTCACGTCAGTCAGG 59 152392135 152392153 GGCATCAAGCTAGGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000051561 ENSRNOT00000085904 1 1 1 60 1 200156826 200156845 TTCAGTTCAGGGCAATTTCC 59 200156785 200156804 TCAGCCAATTTCAATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000052180 ENSRNOT00000089892 3 1 1 60 3 75024268 75024286 CTTGAGTCCAGGAGTTCTG 57 75024310 75024328 GAACTTACTGTGGACACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059657 ENSRNOT00000080495 1 1 1 60 10 74778226 74778249 ACTAGAGAAGTTTCTCTGACTGTG 60 74778268 74778286 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030590.1 ENSRNOG00000045884 ENSRNOT00000073776 2 1 1 75 10 94982576 94982594 CTAGACGAGACACAGTGCA 59 94982519 94982537 AGACCTTACAACTGCAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059782 ENSRNOT00000086132 1 1 1 60 7 5659918 5659937 TCAAAGAGGACAACCTTCCA 59 5659960 5659978 ACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035323 ENSRNOT00000053446 1 1 1 60 3 162114743 162114762 CTGATCTCGTCTGATCTCGG 60 162114783 162114803 CTCCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057029 ENSRNOT00000082541 3 1 1 66 13 4115280 4115298 ATAAGAAGCACAAGGGCCA 59 4115232 4115251 CTATGATAACCTGGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053545 ENSRNOT00000082823 2 1 1 60 10 95583845 95583865 GACAGTGCGATAGAAATTCAC 58 95583887 95583905 TTTAACATGCGCAAAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054120.1 ENSRNOG00000045370 ENSRNOT00000070637 2 1 1 71 3 142141739 142141758 ATAGCAAGTTGGCATTCTGG 59 142141792 142141810 ACTATGCTGACATCCTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054566 ENSRNOT00000089030 2 1 1 62 19 44829923 44829941 CACACTTAGCGATTGCCAG 59 44829967 44829985 AAGAAGGGACAGATGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056399 ENSRNOT00000089704 3 1 1 60 15 73123726 73123744 TACTGTGTCACATGTGCAC 58 73123766 73123786 ATTGAGCATCGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025673.1 ENSRNOG00000052847 ENSRNOT00000073762 3 1 1 80 16 45085904 45085927 AGATTTCACCTCACATGCGA 60 45085843 45085863 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000056919 ENSRNOT00000077870 1 1 1 60 6 81835404 81835423 ATCCTTTGACCTGGGAAGTC 60 81835446 81835464 TCAGCACAACCTGAGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA46 ENSRNOG00000057075 ENSRNOT00000080595 3 1 1 61 19 9729536 9729554 CCCATTCTAGGTTACGCTG 58 9729579 9729597 GAGTCAGCTGTGCAATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060231 ENSRNOT00000077180 1 1 1 60 10 60674310 60674331 AACGAGTACAGAGAAGATTAGC 58 60674271 60674290 TTCACGAATTATTGCGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053352 ENSRNOT00000089317 3 1 1 60 13 3086759 3086778 ATCAATAGGTGACAGTGAGC 57 3086718 3086736 TCTCCACAGCTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017936.1 ENSRNOG00000050460 ENSRNOT00000091428 1 1 1 80 15 34897575 34897594 CATGTGACATTCTGTGGTGG 59 34897065 34897537 TCGGTGGATACTTCCATTATAGTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000061077 ENSRNOT00000084064 2 1 1 60 15 80581198 80581220 GGAACGATACAGAGAAGATTAGC 59 80581160 80581178 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.2 ENSRNOG00000051136 ENSRNOT00000075905 3 1 1 60 X 115561342 115561363 GGTTCCAGATTCGGAATTACTG 59 115560089 115560108 TACTCTTTGTTGCATGCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051959 ENSRNOT00000085691 3 1 1 60 18 34224713 34224735 GACCTTCCCTAAATAGAAGAGGA 59 34224752 34224773 GAGGCTACAGCTATTCATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056288 ENSRNOT00000092025 2 1 1 62 13 58388654 58388675 GCTATCTCAATTGATTGCTCGT 59 58388695 58388716 GTGTGGAAAGTATAGAACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000060467 ENSRNOT00000090822 1 1 1 60 5 116923695 116923714 CAGTCACAGATTGAACTCCT 57 116923734 116923755 TCTAGTCAAGTGCAGTAATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019412.1 ENSRNOG00000037886 ENSRNOT00000057567 1 1 1 87 15 104449345 104449363 CATCTGTCTGTTTCCCGAG 58 104449413 104449433 AATCAATGCAACAGCAAAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052711 ENSRNOT00000085261 2 1 1 60 10 103384231 103384249 ACAAGCAACTGCATCTTCC 59 103384272 103384291 GAACGCATGGGCTTATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA14 ENSRNOG00000053462 ENSRNOT00000086085 2 1 1 60 19 59872508 59872526 AATGCTAGACAAAGTGCGG 59 59872466 59872485 ATAAGACTGAGCCACGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056732 ENSRNOT00000087228 3 1 1 60 18 62405966 62405986 GATTGCTCAGTTGGTGAAGAC 60 62406006 62406026 TTACTGATGACAGAATGGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058868 ENSRNOT00000085157 2 1 1 60 18 38289381 38289400 CTCTTTGACCAATCCAGGAG 58 38289417 38289441 GAAGATCCTCTTTAGTAGAACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056173 ENSRNOT00000077955 1 1 1 60 X 96887833 96887857 ATCTACAGGTATAGAAGGTGTTTCC 60 96887797 96887818 CTTATCTGCCACCTAATGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058886.1 ENSRNOG00000055307 ENSRNOT00000083250 1 1 1 81 7 141672689 141672707 CCATCAAGGGCAAACACTG 59 141672752 141675260 ACTTTCGAGGTTCCTGTGG 60 Novel Rattus norvegicus 81 AABR07044080.2 ENSRNOG00000057601 ENSRNOT00000079469 2 1 1 81 19 56443734 56443752 CTACCCAGAAGTCTCAAGC 57 56443799 56443819 TTGACACGGGAAAGAAGAG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000056999 ENSRNOT00000085163 2 1 1 60 5 145352643 145352662 GAAACAGCACAGAGATCAGC 59 145352602 145352620 AACGCCTCATGATTTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060058 ENSRNOT00000077716 2 1 1 60 3 74347747 74347768 ATACAGAGAAGATTAGCATGGC 58 74347788 74347807 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057990 ENSRNOT00000090954 2 1 1 65 15 110160726 110160744 AGAGAAGGTTAGCACTCCC 58 110160773 110160791 CGTATGCGTGTTGTTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000061360 ENSRNOT00000084803 3 1 1 64 20 45357215 45357239 TACTAGAGAAGTTTCTCTGACTGTG 60 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034530 ENSRNOT00000052653 2 1 1 60 20 33366703 33366726 CCAATCTCATATGATCTCAGAAGC 59 33366666 33366687 CTCCCATTCAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059353 ENSRNOT00000089187 2 1 1 60 18 33982408 33982426 TTGCATGTAAGACTTGCCA 58 33982366 33982385 ATCCAGATCACCCAAACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054830 ENSRNOT00000081076 1 1 1 88 6 49954997 49955015 TAGAACCATTGCAAGTGCG 59 49955067 49955085 TCTGAACACTGAGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054735 ENSRNOT00000090672 2 1 1 68 15 73946296 73946315 TGCATGCTATGTCACATGTG 59 73946343 73946364 GAACACTGAACAAAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057894 ENSRNOT00000091844 2 1 1 60 15 8774703 8774722 CTGTTGCTTCAGCTGATCTG 59 8774662 8774682 CCAGATCAGCGGAAATAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058091.1 ENSRNOG00000048680 ENSRNOT00000074578 3 1 1 63 7 99735412 99735435 ACAGTACAGTATAGCACAGTACAG 60 99735453 99735475 CTGTGCTGTACTATACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058914.1 ENSRNOG00000032026 ENSRNOT00000044982 1 1 1 78 7 142695728 142695746 CACTCTACAACTACCCGGC 60 142695666 142695684 AACTTGTCAAAGGGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059631 ENSRNOT00000090635 2 1 1 60 4 112572691 112572709 GTCCATCAGTAGGTGGCAG 60 112572731 112572751 TTCGTAGATCAGAGCACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054361.1 ENSRNOG00000031275 ENSRNOT00000051667 1 1 1 60 3 149943070 149943089 CACATGGGAGTTTCTCAGAC 58 149943029 149943047 TCCATCCTGTTTCAGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036972.1 ENSRNOG00000045894 ENSRNOT00000071538 2 1 1 80 X 8471552 8471571 CAGCTGTAAGGCATTTCCTC 59 8471491 8471509 AAGACTACCAGCCTAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036019.1 ENSRNOG00000051442 ENSRNOT00000079144 1 1 1 104 12 30662704 30665535 GTACCCAGAGAATCTTTCTGAC 58 30665600 30665618 TTGTCTGACGTCTCTTTGC 58 Novel Rattus norvegicus 81 AABR07036019.1 ENSRNOG00000051442 ENSRNOT00000079144 2 1 1 105 12 30662704 30665535 GTACCCAGAGAATCTTTCTGAC 58 30665600 30665619 CTTGTCTGACGTCTCTTTGC 59 Novel Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 1 2 2 80 4 164047280 164047299 GGATTGGATGTCAACAAGCC 60 164042718 164047240 GAAGGAACTTCAGTTCATCCTC 59 Novel Rattus norvegicus 81 SNORA52 ENSRNOG00000054652 ENSRNOT00000091098 3 1 1 60 18 10489234 10489256 CACTATGGAAATCAATAGGGCAG 59 10489276 10489294 TCTGGCAAGGTTTCTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr1 ENSRNOG00000049693 ENSRNOT00000041838 2 1 1 89 11 33845740 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846295 33846313 TGCAGACATCTTGGGTACC 59 Novel Rattus norvegicus 81 LOC680227 ENSRNOG00000037911 ENSRNOT00000075940 1 1 1 102 X 74315901 74315919 GTAGTTTGTGTTGGACGGG 59 74315985 74337719 TTCTTCAGCATTACGCTCC 58 Novel InUTR Rattus norvegicus 81 uc_338 ENSRNOG00000057786 ENSRNOT00000082109 2 1 1 62 6 127005752 127005773 CTTTATCCACAGAACAGATCCA 58 127005796 127005814 GGTTTAGGCACATTGGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051658 ENSRNOT00000091002 3 1 1 63 9 102542662 102542685 CACATATTCATCAGTAGATGGCAG 60 102542622 102542640 CATAGGTCAGAGCACTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.2 ENSRNOG00000051768 ENSRNOT00000084482 1 1 1 143 6 139429025 139429316 AACTAAATCACTGCACAGACTC 59 139429530 139429548 AGTTTCAGGGACCTTCCAG 59 Novel Rattus norvegicus 81 SNORA73 ENSRNOG00000055955 ENSRNOT00000080673 1 1 1 73 5 35951227 35951245 CTCTGACATAGTGGTGCAG 58 35951279 35951300 ACCTCTAATATTGTGGAAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068274.1 ENSRNOG00000053030 ENSRNOT00000081131 1 1 1 60 9 94634027 94634045 CCTCAGTGGCATCAAATGC 60 94633985 94634003 GACTGATGGAGGCTCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.2 ENSRNOG00000055475 ENSRNOT00000083025 1 1 1 80 6 139531565 139531584 CCCTATACCTGCAAATGGAC 58 139531625 139531688 GGTCACTAGTATCTGTGTCTG 57 Novel Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 1 2 2 82 6 139865495 139911804 TTTGAAAGGTGTCCAGTGTG 59 139865432 139865450 AGGAGAGTTTCAGGGACCT 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000056405 ENSRNOT00000084719 3 1 1 60 18 74993296 74993315 ATACCATGACCTTGAAGACG 57 74993336 74993356 CTCATAAAGAGTGCAGAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130624.1 ENSRNOG00000046397 ENSRNOT00000073929 3 1 1 60 X 15536950 15536969 GTTTGTTATGTGTTCCTGGG 57 15536909 15536928 TGAGTTTGAAGCTAGCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.3 ENSRNOG00000059130 ENSRNOT00000079416 3 1 1 113 1 198936726 198936744 AAATGAGGAGTGGGAGCTG 59 198936817 198936839 AGGTAAAGTAGAAAGTGACAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052105 ENSRNOT00000089755 1 1 1 60 X 131743025 131743043 AGAATGATCTGGCTGGGAC 59 131743067 131743085 AGATCTGGCAAATCAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055927 ENSRNOT00000089507 1 1 1 60 18 78919907 78919925 TTGTGTCAGTAGGTGGCAG 60 78919949 78919967 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058165 ENSRNOT00000088040 1 1 1 60 6 20467589 20467611 CAGTCAGTTACAGATGGAAATCC 59 20467628 20467649 TCAAATGGAGTAGTGAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053570 ENSRNOT00000078965 1 1 1 60 4 8204294 8204312 TGTCACCTCACTGATGACC 59 8204331 8204354 GGGTACATTAGACTAAACATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059355 ENSRNOT00000079723 3 1 1 60 X 16254129 16254151 GATACAGAGAAGATTAGCATGGC 59 16254171 16254189 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054451 ENSRNOT00000083095 1 1 1 60 18 25387722 25387740 TCGAATGTTCATCAGCAGG 58 25387680 25387698 CACAGGTCAGGACATGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000087321 2 1 2 79 20 3952241 3952259 CTACACTCCTCTCCCTGGA 59 3952566 3952584 TCTGGATCTCCTTCTCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA29 ENSRNOG00000059086 ENSRNOT00000088550 1 1 1 77 X 51188165 51188183 GTGGCTATGTTTAAGGGCT 58 51188106 51188127 TCATATAGAGGAAAGTCAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000059514 ENSRNOT00000089562 3 1 1 60 X 113464788 113464806 TTGAAACCAAGAGCTCCCA 59 113464746 113464765 TGAGTCCCTTTATCGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006871.1 ENSRNOG00000053536 ENSRNOT00000082839 1 1 1 133 1 261464196 261464337 AAATCTGCGAGAGGAGACC 59 261464434 261464452 ATTATAGCGGATGCCGTCC 60 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058972 ENSRNOT00000089543 2 1 1 60 X 152670112 152670133 TGTTGTTCTCATATCAGTCAGG 58 152670151 152670172 TCAAGGTAGGATGAACAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061830 ENSRNOT00000085740 3 1 1 60 6 128084107 128084125 ATACGTGTGCCAGTAGGTG 60 128084065 128084086 GATCAGAATGCTGAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0427.1 ENSRNOG00000057689 ENSRNOT00000084857 2 1 1 60 1 41324760 41324778 CAGTTCCAGCCAACAAGAC 59 41324802 41324820 GCTCCAATCTGTCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058134 ENSRNOT00000080412 1 1 1 60 7 15377877 15377895 TGAAACAATACAGAGGCCC 57 15377919 15377937 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000058198 ENSRNOT00000079026 1 1 1 60 6 43450559 43450577 CTTGGAAGCTAAGCAGGGT 60 43450517 43450535 GTATTCCCAGGCAGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.5 ENSRNOG00000061647 ENSRNOT00000082576 3 1 1 101 6 139654369 139654473 ATTTCAAAGCTGTGTCCTGTC 59 139654288 139654306 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 AABR07061874.1 ENSRNOG00000046940 ENSRNOT00000072408 2 1 1 60 4 150484497 150484515 TGTGTTCTCTGATGGACGG 59 150484538 150484557 GCAATGCATGTAGGAAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041779.1 ENSRNOG00000043755 ENSRNOT00000069022 2 1 1 61 X 139999284 139999305 ATTGAGATTCTGTGCTTCTTGG 59 139999327 139999345 CTCCTGGGAACTTGTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061417 ENSRNOT00000082960 1 1 1 60 6 3513055 3513073 TATCGCAAAGATGGCTTCC 58 3513013 3513031 GAGACCAGCACACCTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562948 ENSRNOG00000013975 ENSRNOT00000018934 2 1 1 80 1 48025082 48025419 CCGAGAAGGTGAACATCGA 60 48025461 48025481 AGGTCACTAGAATCCTACAGC 59 Novel Rattus norvegicus 81 AABR07044765.1 ENSRNOG00000050313 ENSRNOT00000075759 1 1 1 60 20 19864248 19864269 CCTTGAACTCATAGAGATCCAC 58 19864290 19864308 AGCATGCCTTTAATCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000057605 ENSRNOT00000088011 2 1 1 63 10 74626797 74626815 AACTGACCAGGTTCCTTCC 59 74626842 74626860 AATACCACCAAGGAGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.10 ENSRNOG00000059953 ENSRNOT00000087855 3 1 1 103 6 138908969 138909071 CATTTCCAAGCTGTGTCCT 58 138908884 138908902 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000058374 ENSRNOT00000086059 1 1 1 60 15 19834009 19834031 GGAACAACACAGAGAAGATTAGC 60 19834051 19834069 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044990 ENSRNOT00000070257 3 1 1 60 15 57342183 57342202 TACCACCCTGAACACATCTG 60 57342224 57342243 CTAGATATCCATCAGGCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053473 ENSRNOT00000077395 1 1 1 60 15 13869147 13869169 CAATGCAGAGAAGAGTAATGTGG 60 13869109 13869127 GACTGCTTGGTTAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057594 ENSRNOT00000091250 2 1 1 60 20 8995509 8995527 ACATACACAGGAACTGGGA 58 8995551 8995569 TTTGCATGTCGTCTTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000059119 ENSRNOT00000087821 2 1 1 60 20 2219527 2219547 CTCAACGACAGGTTGTATTCC 59 2219567 2219587 GTAGGTTTACTCTGCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061239 ENSRNOT00000085239 2 1 1 62 4 115021739 115021757 CAGAGATTTAGCTTGGCCC 58 115021695 115021713 TAAGCTTGGCAGTAGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056199 ENSRNOT00000085974 3 1 1 60 5 127567594 127567614 CTTCCTGTGGTTTATTGGCTC 59 127567634 127567654 TCTTCCAGATGGGATAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058702 ENSRNOT00000082913 1 1 1 60 11 79317086 79317107 TCACGTGTACATCAGTAGATGG 60 79317047 79317065 CAGAGTCCTGAGCACAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002008.1 ENSRNOG00000056036 ENSRNOT00000081213 3 1 1 80 1 64745840 64745858 GCCTGGACTCTACTCAGAG 59 64745900 64747538 AGTAGTTCTCAACAGAGACCA 58 Novel Rattus norvegicus 81 AABR07052166.1 ENSRNOG00000053755 ENSRNOT00000091168 3 1 1 105 3 40477701 40477721 CTAATAAGTGCCATATGGCCA 58 40477153 40477555 TGGGACTTGATGAATGTTGAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051897 ENSRNOT00000086373 2 1 1 60 9 14334157 14334176 TGACCCTAGAGGCATTACAG 59 14334116 14334134 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115473.1 ENSRNOG00000060981 ENSRNOT00000088844 2 1 1 61 4 115218301 115218320 AGTCAGCTGGAATTCATGAG 58 115218259 115218277 GCGGATGTCAATGTCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107331.1 ENSRNOG00000059331 ENSRNOT00000089760 1 1 1 80 1 170080674 170080696 AGATTTCACCTCACATGCG 58 170080739 170080758 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058294 ENSRNOT00000085179 2 1 1 60 11 18918839 18918862 GATATGGCTGCTATGTCATATGTG 60 18918881 18918899 AGCAGTCATAGCCTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052221 ENSRNOT00000090315 2 1 1 60 5 31308333 31308354 CAGGGATACAGAGAAGATTAGC 58 31308294 31308313 GTTTCATGCATTTGCATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054051 ENSRNOT00000085021 3 1 1 60 5 157277871 157277891 AGATACCATGGTCATGAAGGT 59 157277831 157277854 CCAGAGTACAATAATGGATAAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055294 ENSRNOT00000084194 3 1 1 60 10 46463416 46463434 CAAAGGCAATGTCCTCAGG 59 46463374 46463394 CTTAAGGGCAACATATCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000061393 ENSRNOT00000091576 1 1 1 60 11 84548938 84548957 AATGCTTTGTAGCCTTTCCT 58 84548897 84548915 CTTATGCAGCTCCTACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051557 ENSRNOT00000091947 2 1 1 82 19 61811009 61811028 AATGAGGTTTATCCGAGGTG 57 61810946 61810966 GCTAAGTACTCCTGAACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000057229 ENSRNOT00000085729 2 1 1 61 5 29494860 29494880 CAGTCAGTAATTTACACAGCC 57 29494901 29494921 CCAGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058032 ENSRNOT00000090826 2 1 1 60 5 114474030 114474048 CATGTTCACAAAGGTGGCT 59 114474072 114474090 TCAGGACATCCAGAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068980.1 ENSRNOG00000057314 ENSRNOT00000075124 2 1 1 60 8 4220425 4220444 CCTTCTAAGATTGGTGTCCC 58 4220465 4220485 TCAGAATAGTCTTTGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053958 ENSRNOT00000082219 1 1 1 60 20 17226808 17226828 GTGTCACATATCGTCAGTAGG 58 17226768 17226786 AGCACCTTGAGCATAGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043347.1 ENSRNOG00000051410 ENSRNOT00000074702 1 1 1 60 19 27603717 27603738 CTTCACCAACAGAATACAAGAG 57 27603756 27603777 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059598 ENSRNOT00000079372 3 1 1 60 4 157768759 157768778 CACCTTTGTAGTGTACGCAG 59 157768718 157768738 TGTCTCCTAGGTCTCTTAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054030 ENSRNOT00000091872 3 1 1 60 11 85129454 85129472 ACCTACAGGTAAAGCAGGT 58 85129412 85129431 CTCTTCTATGCCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000052975 ENSRNOT00000087166 3 1 1 60 7 92034046 92034064 GTGCATCAGTTGGTGACAG 59 92034088 92034106 CTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051370 ENSRNOT00000086730 3 1 1 60 5 73747140 73747158 GTGCACACCTATAGTCCCA 59 73747182 73747200 CCTAGACTCAAGTGGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073038.1 ENSRNOG00000017708 ENSRNOT00000023806 1 1 1 60 4 118327608 118327626 GGTCACTATTACTGGCTCC 57 118327566 118327587 CCTGGCATTGATTAGATACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052779 ENSRNOT00000088015 3 1 1 60 11 1470641 1470663 CGAAACAGAGAAGATAAGCATGG 60 1470683 1470701 GACGCTTCACGAATTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061808 ENSRNOT00000092059 1 1 1 60 6 10897252 10897270 AGGGTTAGTGGTGATGGTC 59 10897210 10897228 ACAGAGCAACGAAAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057394 ENSRNOT00000081366 2 1 1 60 19 62085980 62086001 GCTGCATTAGTAACTAGCAGAG 59 62086021 62086040 ACATGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127076.1 ENSRNOG00000052036 ENSRNOT00000078099 1 1 1 92 5 4927456 4927476 TGATGGAGGACTTTAAGAAGG 57 4927360 4927403 CCTGTAGTTCTTTAAGGGCT 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000059548 ENSRNOT00000083736 1 1 1 60 7 67545609 67545628 GCTCATCTGGATGATTAGGG 58 67545651 67545669 GCCCACATCTTTAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059548 ENSRNOT00000083736 3 1 1 60 7 67545609 67545629 GCTCATCTGGATGATTAGGGA 59 67545651 67545669 GCCCACATCTTTAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.4 ENSRNOG00000057681 ENSRNOT00000090704 2 1 1 69 6 140586986 140587005 ACAGCCATGTATTACTGTGC 58 140585094 140585112 TTGTGATGCCGAAGTAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057302.1 ENSRNOG00000040372 ENSRNOT00000062125 1 1 1 62 7 65243025 65243044 GGATTAATGACCAGCTGGGA 60 65242982 65243000 ATTAATGGCTGGCTGGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060985 ENSRNOT00000087853 3 1 1 70 17 12202143 12202162 TAGAGGCATTGCTGGTATGG 60 12202092 12202110 AGACTCAGCCTCTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061016 ENSRNOT00000086071 2 1 1 60 6 59446061 59446079 GACCGAGAGGCTATGTCAC 60 59446100 59446121 GGCTGCTAATAATTCAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009457.1 ENSRNOG00000046362 ENSRNOT00000071824 1 1 1 80 2 98613890 98613910 GGCATTATTAGGGACTTGGTG 59 98613826 98613850 CTTTCCAAACCGGATAACCAG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053251 ENSRNOT00000091517 3 1 1 92 4 175972565 175972583 TGAGGTTTATCCGAGGCAC 60 175972491 175972510 CTACCACTGAGCTAGATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060930 ENSRNOT00000084811 1 1 1 60 11 67350566 67350585 GAATGCTACAGAGGTTACCA 57 67350605 67350626 GACTGTTTCGTGTATGTTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000051999 ENSRNOT00000082012 2 1 1 60 4 69404003 69404021 TAACCGCACTGAGAAAGGA 59 69404045 69404063 CTCTTGGCTTGGTCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057408 ENSRNOT00000092015 3 1 1 60 4 99964364 99964386 CGATACAGAGAAGATTAGCATGG 59 99964326 99964344 AACACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027283.1 ENSRNOG00000058495 ENSRNOT00000080977 3 1 1 80 17 22811477 22811496 TGAATTGTCTGCATACTGCG 59 22811412 22811435 ATTGACTTGATGTGGCAGAC 59 Novel Rattus norvegicus 81 AABR07058826.1 ENSRNOG00000036515 ENSRNOT00000054622 3 1 1 63 7 138683297 138683315 AGAAAGCATCCTCCTTGGG 59 138683342 138683360 ATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050006.1 ENSRNOG00000058676 ENSRNOT00000084118 1 1 1 87 5 148066138 148066156 TTCAAAGGGATCAGCTGGG 60 148066205 148066226 TGTGAGCTATACGGATGAGAG 59 Novel Rattus norvegicus 81 snoU89 ENSRNOG00000052563 ENSRNOT00000084518 1 1 1 60 4 157233729 157233747 ATCTGGAATCTTGGCAGGG 60 157233769 157233789 CTATTGATCTGGCCTTACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059272.1 ENSRNOG00000049486 ENSRNOT00000075112 2 1 1 61 4 13255448 13255466 CCTCCTCTTCCTCTTCCAC 59 13255488 13255509 GCATGAAATAGAACACAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061586.1 ENSRNOG00000036454 ENSRNOT00000054565 1 1 1 60 4 134985217 134985235 AGGGCTATAACCAGCACAG 59 134985257 134985277 CTCAAAGAGATACTCACCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003650.1 ENSRNOG00000054073 ENSRNOT00000072981 3 1 1 82 1 117175455 117175675 GGGACCACAGAAATAGCAG 58 117175721 117175739 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058346 ENSRNOT00000082093 2 1 1 60 17 50959710 50959729 GGGATATCTCCTTCCTCCCT 60 50959669 50959688 ACAGAACATGCAACTTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052752 ENSRNOT00000077645 1 1 1 60 10 7261006 7261024 GGGTACACTTCTCTTGCTG 58 7261047 7261066 TCCTGTTACAGAACTGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054187 ENSRNOT00000085036 2 1 1 60 17 75846127 75846145 CGACACCGAGAAGATTAGC 58 75846166 75846187 GAATGCTTCATGGATTTACGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052729.1 ENSRNOG00000058982 ENSRNOT00000078440 1 1 1 80 3 71012448 71012770 AAGAAGGAAGAAATGAGCAGAG 59 71012389 71012407 ACAAATCAGCGTGTAACCA 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045251 ENSRNOT00000070518 3 1 1 63 7 64958041 64958059 ATCCTGAAGCAACAAGCAC 59 64957996 64958015 CTTAGCTTCTGGCTCAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000060466 ENSRNOT00000083723 1 1 1 60 10 74778226 74778249 ACTAGAGAAGTTTCTCTGACTGTG 60 74778268 74778286 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094217.1 ENSRNOG00000039788 ENSRNOT00000038102 3 1 1 108 1 31436824 31436843 AAGATATGGCAAAGGCTGAC 58 31436995 31437013 CACATCGATGGATAAGCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC114111.1 ENSRNOG00000052955 ENSRNOT00000090498 1 1 1 194 7 70452546 70452564 CTGAATCGTAAATCCGCCG 59 70452370 70452388 CTTGAGCAATCTTCTCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058449 ENSRNOT00000091608 1 1 1 60 9 69955515 69955534 GTCTGCAGCTGTCTTTATGG 59 69955554 69955575 TGTAACAGTTTCTTTCCCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053419 ENSRNOT00000084084 3 1 1 60 7 92031019 92031040 GATACAGAGAAGATGATCGTGG 58 92031059 92031079 GAATGCTTCATGAGTTTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.1 ENSRNOG00000022738 ENSRNOT00000031394 2 1 1 60 6 79149606 79149624 CTGAAGTCTCTGAACCCAC 58 79149564 79149582 GAACATCCTTCCACTGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057100 ENSRNOT00000083242 1 1 1 60 4 183217684 183217704 CAGGGAGGTTCTATGATCAGG 60 183217644 183217665 TCCAAGTGACATGAATAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps6 ENSRNOG00000059381 ENSRNOT00000087452 3 1 1 90 11 32253015 32263520 CGAGGAGGGTATTTCTTGGT 59 32263572 32263591 TAACCACATCAGTGTCTCGT 59 Novel Rattus norvegicus 81 ENSRNOG00000054319 ENSRNOT00000077706 3 1 1 105 14 80678609 80679548 CATCTGCTGAGACACTTGC 59 80678522 80678540 TGGGATGTACGCTGTACAC 60 Novel Rattus norvegicus 81 SNORA11 ENSRNOG00000058707 ENSRNOT00000085194 2 1 1 62 7 97969695 97969714 CCTAAAGAGTGGCTTCTCTG 58 97969652 97969671 CCTCATTACAATGGTCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047750.2 ENSRNOG00000059308 ENSRNOT00000086284 1 1 1 60 5 45733898 45733917 CAACAATGGAGGAGTGTTCC 59 45733939 45733960 AAATAGGTGACAGCAAATGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07047750.2 ENSRNOG00000059308 ENSRNOT00000086284 3 1 1 61 5 45733895 45733913 CACCAACAATGGAGGAGTG 59 45733937 45733958 ATAGGTGACAGCAAATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043775.1 ENSRNOG00000054540 ENSRNOT00000088671 1 1 1 60 19 39655442 39655461 TTAGAATCCACAAGCGACTC 58 39655401 39655422 GTAATCCGCTTAACAATCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071870.1 ENSRNOG00000058422 ENSRNOT00000077327 3 1 1 80 1 64079921 64080015 ACCAGAAGAGGTCAAACCC 59 64080287 64080308 CATCCTTAGTTTCCATGTCCTC 59 Novel Rattus norvegicus 81 AABR07057511.1 ENSRNOG00000059775 ENSRNOT00000080269 2 1 1 61 7 75495544 75495562 CTGGCATTGTTAGCCAACC 60 75495586 75495606 CAGCAGGATTGTAAAGGAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC118963.1 ENSRNOG00000049922 ENSRNOT00000072337 2 1 1 104 5 151750104 151750124 TGAAATGAAGGTGATGCTCTC 58 151750020 151750038 GAAACGAATGATGAGCGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060043 ENSRNOT00000083141 3 1 1 60 8 130537180 130537201 TGCTTAGTCAAGAGGATAACCC 60 130537141 130537161 TATATCCTTGACCGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0879.6 ENSRNOG00000051194 ENSRNOT00000076682 3 1 1 89 10 88077269 88077287 GCTATCAACTGCTGAGGCT 60 88076336 88077216 GATGTACCTCTTGCAGGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055199 ENSRNOT00000085538 2 1 1 60 8 113030346 113030365 CTGCTGTATCACCCATAGGT 59 113030305 113030326 TCAGAACACTGATAGTAGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054837 ENSRNOT00000087077 1 1 1 60 8 94377984 94378002 GTCAGTAGGTGGCTGAGAG 59 94378024 94378044 TGTTTACAGGTCAGAACACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042904.1 ENSRNOG00000053115 ENSRNOT00000079257 3 1 1 80 19 14460016 14460034 GCCTGGACTTAGACCAGAG 59 14460077 14465083 TGAAGCATCCTAGTGAGAGC 59 Novel Rattus norvegicus 81 AABR07042323.1 ENSRNOG00000005681 ENSRNOT00000007487 2 1 1 60 X 152781447 152781466 AAAGGAGCCAATGAAGACAC 59 152781406 152781427 CCATCACAATGAACTCAGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042323.1 ENSRNOG00000005681 ENSRNOT00000007487 3 1 1 60 X 152781449 152781468 GGAAAGGAGCCAATGAAGAC 59 152781408 152781429 ATCACAATGAACTCAGAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068694.1 ENSRNOG00000032822 ENSRNOT00000056378 1 1 1 60 9 114731794 114731812 CCAAGTCCAAGAACCACAC 59 114731752 114731771 TTGATACCATTTCTGTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554371 ENSRNOG00000042473 ENSRNOT00000064120 2 1 1 270 10 87928127 87928145 TGTTGTGAGGAGTGTTGCT 60 87927875 87927893 TTCATTTCGTCTCGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037545.1 ENSRNOG00000060708 ENSRNOT00000089821 2 1 1 89 X 23416605 23416747 CCTTCTACACAGGTTGGGA 59 23416800 23416818 TGTTTGCTCTGTAGCACCA 60 Novel Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000052555 ENSRNOT00000083087 3 1 1 66 2 198389031 198389049 AAGAAGACCCGCATCATCC 60 198389078 198389097 GCTTGTTGAGTTCTTCGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012030.1 ENSRNOG00000053252 ENSRNOT00000071276 2 1 1 81 2 182796617 182796639 AAGAGCCTCTTCACTACTAAGC 60 182796553 182796571 GATGTCACCCTGGGAACTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000058037 ENSRNOT00000077605 2 1 1 60 3 4224921 4224939 TACTCAGATGAGCTGACCC 58 4224879 4224898 TATGCAGTTGAGTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030630.1 ENSRNOG00000052124 ENSRNOT00000077567 3 1 1 60 10 96661762 96661781 CAACTCAAAGTACCTCCTGC 59 96661804 96661822 TAGCTGTTTCACAGTCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000061827 ENSRNOT00000082179 1 1 1 60 8 96408750 96408772 ATGATGATCCTATCCCGAATCTG 60 96408712 96408733 GAAGCCAGATCTGTAACTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061505 ENSRNOT00000087307 2 1 1 60 1 263635309 263635331 CAGGACAGAAGAGATTAACATGG 59 263635271 263635289 GAGGCATCCCGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC091229.1 ENSRNOG00000059485 ENSRNOT00000079411 1 1 1 80 10 37486516 37486534 GCGACAGGAAAGAATTCCA 58 37486577 37487911 TCTGTTTAACCTCCATCCCT 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000058622 ENSRNOT00000089738 3 1 1 61 8 72902470 72902488 ATCCCTCAGTCAAGAAGGG 58 72902513 72902531 AAGATCTGGATTGCAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097575.1 ENSRNOG00000046927 ENSRNOT00000074227 3 1 1 154 12 46915142 46915160 TGCTCAGACACAAAGACAC 58 46915280 46915303 GATGCTGACGTGTTGAGAG 59 Novel Rattus norvegicus 81 AABR07072423.1 ENSRNOG00000060726 ENSRNOT00000089906 1 1 1 101 14 84610282 84611052 TGTTAATAACAACTGGGCCAC 59 84612367 84612391 GTAGATATTTCCACAGATCTTCCTC 59 Novel Rattus norvegicus 81 AABR07072423.1 ENSRNOG00000060726 ENSRNOT00000089906 3 1 1 103 14 84610282 84611052 TGTTAATAACAACTGGGCCAC 59 84612369 84612393 CTGTAGATATTTCCACAGATCTTCC 59 Novel Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 1 1 1 87 1 214009854 214009873 ACGAGACTAGGAACACCAG 59 214009783 214009801 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070858.1 ENSRNOG00000050039 ENSRNOT00000072615 1 1 1 81 8 88337049 88337071 TCACCTCACACCAGAATGG 59 88336986 88337005 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07024722.2 ENSRNOG00000057024 ENSRNOT00000077469 1 1 1 87 16 12626632 12626780 CAGACAAGAGTGAGAATGATTCTG 60 12626568 12626586 AGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 AABR07024722.2 ENSRNOG00000057024 ENSRNOT00000077469 2 1 1 88 16 12626632 12626780 CAGACAAGAGTGAGAATGATTCTG 60 12626567 12626586 TAGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061858 ENSRNOT00000083567 2 1 1 60 8 85317347 85317367 TCAGTAGGTGACAGAAAGGAG 59 85317307 85317326 ATATTCACCGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097023.1 ENSRNOG00000041504 ENSRNOT00000063257 3 1 1 61 8 85987253 85987271 GAAGGCAGACAGATCCCTG 60 85987210 85987228 TGTCCTGGAATTCCCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008255.1 ENSRNOG00000054421 ENSRNOT00000085374 3 1 1 157 2 49682760 49682778 GTACACTTGCTGGTAACCG 59 49682619 49682638 ATAATTGATGGAGGGTTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053784 ENSRNOT00000085085 3 1 1 60 8 89757421 89757439 TGTGTCACATCCGAGTCAG 60 89757461 89757481 AACACTGAGCATAGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044278.1 ENSRNOG00000049494 ENSRNOT00000071753 1 1 1 80 20 956123 956144 TTGGTGACATATCTATTGGGCT 59 956062 956082 CATTGGAGACTGGAGTGGG 60 Novel Rattus norvegicus 81 AABR07026596.2 ENSRNOG00000055140 ENSRNOT00000088012 1 1 1 60 16 85305668 85305688 TATCTTCTCCTTTCTCAGGGC 59 85305710 85305728 AAGTCTGCAAAGAACCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026240.1 ENSRNOG00000061711 ENSRNOT00000090682 3 1 1 60 16 69262273 69262292 GGTGTACAGCTTCACATCCT 60 69262232 69262250 TTCCTTGGACACTTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052528 ENSRNOT00000079001 3 1 1 60 3 113388703 113388723 TGCATATTCCTACGACCTCTC 59 113388745 113388763 CTGCATGGTTTGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054424.1 ENSRNOG00000050427 ENSRNOT00000073120 1 1 1 60 3 153231165 153231184 TTACTGTGTAACCCAAGCTG 58 153231124 153231142 AGAGTTAGAGGCTAGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000057340 ENSRNOT00000080125 1 1 1 60 16 39354476 39354495 TACACAACTTCCCAAATCCA 57 39354518 39354536 ATCACTCCATTTCCACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 1 1 1 60 18 4600339 4600360 ATGGTGAGGAGAGTAATATCGA 58 4600380 4606777 CCATATCAGGAAGCCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 2 1 1 61 18 4600338 4600359 GATGGTGAGGAGAGTAATATCG 58 4600380 4606777 CCATATCAGGAAGCCTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031253.1 ENSRNOG00000058026 ENSRNOT00000080420 3 1 1 83 18 5913995 5914504 GTATCCAGAAGGAAGCCCT 59 5913930 5913950 AATGCAGACCATGTAGATGTC 58 Novel Rattus norvegicus 81 AABR07046731.1 ENSRNOG00000055458 ENSRNOT00000087006 2 1 1 135 5 3899330 3899348 GAATAACCCTCTGAGTGCG 58 3897713 3897731 CTTGAGTAGTCGGAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07046731.1 ENSRNOG00000055458 ENSRNOT00000087006 3 1 1 136 5 3899331 3899349 CGAATAACCCTCTGAGTGC 58 3897713 3897731 CTTGAGTAGTCGGAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07046738.1 ENSRNOG00000052056 ENSRNOT00000078149 2 1 1 80 5 4275856 4275874 GTACAGTAAGACCGGTGGT 59 4275917 4297063 TCAAAGCCCACTAGTACCTG 59 Novel Rattus norvegicus 81 AABR07046738.1 ENSRNOG00000052056 ENSRNOT00000078149 3 1 1 80 5 4275850 4275871 CTCTATGTACAGTAAGACCGGT 59 4275911 4297057 CCCACTAGTACCTGATGTGG 59 Novel Rattus norvegicus 81 AABR07014987.1 ENSRNOG00000059475 ENSRNOT00000077077 3 1 1 110 14 43166524 43171729 TGAAAGACTAGGTGCTGCA 59 43171803 43171821 CTTCCTGTTCCATTTGCCC 59 Novel Rattus norvegicus 81 AABR07031489.1 ENSRNOG00000052389 ENSRNOT00000079756 1 1 1 80 18 15555589 15558103 GAGCAGTATCAGGTCTTTGG 58 15555528 15555546 GGTTGAAGGATTGGTGAGG 58 Novel Rattus norvegicus 81 AABR07062800.1 ENSRNOG00000054861 ENSRNOT00000079649 2 1 1 94 6 9635387 9635405 CTCTGCCATGAAGGATGTG 58 9628788 9635331 TGTTCATTAGATCTTCACGCC 59 Novel Rattus norvegicus 81 AABR07031526.1 ENSRNOG00000053150 ENSRNOT00000083801 3 1 1 81 18 17876100 17878482 TTTCCTTCTCCTGGTTCTGG 59 17876038 17876057 TTCGGCCTTAAGATGAGAGG 59 Novel Rattus norvegicus 81 AABR07047054.2 ENSRNOG00000058921 ENSRNOT00000086257 3 1 1 60 5 17592632 17592651 AGGATTATCTTGTCAGGCCA 59 17556480 17556501 GATTCAGGACAATAGCCAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029636.1 ENSRNOG00000055095 ENSRNOT00000089646 1 1 1 80 10 42270323 42271891 ACATGTTCCTCTCCAGACTG 59 42270262 42270283 GAGAAATCTCATTGGCTCTTCC 59 Novel Rattus norvegicus 81 AABR07029636.1 ENSRNOG00000055095 ENSRNOT00000089646 3 1 1 91 10 42173145 42182597 CCAACTATCCAGAGACCCA 58 42173072 42173093 AGAAATGGGTTGTTTCTCACTC 59 Novel Rattus norvegicus 81 AABR07047062.1 ENSRNOG00000056516 ENSRNOT00000089701 2 1 1 80 5 17912034 17917049 TGGAGAGCTATCAAGATCCAG 59 17917088 17917109 GCCTCTGATGTTGAAGATATGG 59 Novel Rattus norvegicus 81 AABR07015510.2 ENSRNOG00000054521 ENSRNOT00000091036 2 1 1 80 14 60349482 60350773 CTTGGAAGAACAGGTTGGAG 59 60350813 60350834 GAGCAAAGGCATTGATATTGAG 58 Novel Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000090103 1 1 2 80 1 13380375 13381756 CTCCAGGAGGAGTGAAACG 60 13380313 13380332 TCAGTTAACTGTTTCCCGGA 59 Novel Rattus norvegicus 81 AC096263.1 ENSRNOG00000055694 ENSRNOT00000085732 3 1 1 82 10 71852106 71858968 CTCTCGGGAATCTGAGATGG 60 71859013 71859031 GAGGGACAGCATCACAGAG 60 Novel Rattus norvegicus 81 AABR07015783.1 ENSRNOG00000054226 ENSRNOT00000081410 2 1 1 81 14 76153086 76153106 GAAATCAACCATGGACTCTCG 59 76145820 76153043 CATTCCCGGTGACTTTGAG 59 Novel Rattus norvegicus 81 AABR07015791.1 ENSRNOG00000059384 ENSRNOT00000090953 2 1 1 83 14 76474392 76474411 TAAGTTCCAGGAATGTGCAG 58 76473227 76474346 TTTCATATGTGCGACTGGG 58 Novel Rattus norvegicus 81 AABR07061240.1 ENSRNOG00000060647 ENSRNOT00000084745 1 1 1 80 4 111442526 111443893 CAACTTCCTTAGCAGCAACC 60 111442465 111442483 TCAAGAAGGCTGACCAGAG 59 Novel Rattus norvegicus 81 AABR07061246.1 ENSRNOG00000057830 ENSRNOT00000079910 1 1 1 67 4 111738358 111738377 GGACCACCTTACTTCTACCC 59 111743434 111743454 GTGGAAATCATCGTGTAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000523.1 ENSRNOG00000053617 ENSRNOT00000081799 1 1 1 60 1 16462966 16462986 CCATGATCCTTCCTTACTTCC 58 16463008 16463026 GCCCTTAGACATCACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061261.2 ENSRNOG00000060697 ENSRNOT00000085515 3 1 1 83 4 112646260 112646278 GAGACTATCTCCTGTGGGC 59 112644463 112646216 TCACTTCGGAACTTTCTTTCAC 59 Novel Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 3 1 1 79 5 58022472 58031710 AACCAGGCTTCTGGAAGTC 60 58022411 58022430 TCATCAAGTGCTCAAGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048075.2 ENSRNOG00000053369 ENSRNOT00000085035 3 1 1 109 5 60521828 60521846 GGCTTCTGAAGCTGTACCT 59 60524219 60524237 GGGTTTCCTCTACCTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048379.1 ENSRNOG00000058548 ENSRNOT00000089154 3 1 1 148 5 75678007 75678025 GTCCCACAACCCTAAATGC 59 75677434 75677895 ACCATCACAGAACCTGCTC 60 Novel Rattus norvegicus 81 AABR07016545.1 ENSRNOG00000060432 ENSRNOT00000087724 2 1 1 114 14 102809494 102878625 CTGAAATGGCAGGATGCAG 59 102809398 102809416 GTGACAGACATGCCAAGTC 59 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 2 1 1 65 4 121701599 121703142 CTCAATACCAGTGTGCAGG 58 121703170 121703189 TAGACATGTCAGCTGATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016592.1 ENSRNOG00000061602 ENSRNOT00000085828 3 1 1 81 14 105914834 105914853 TGACGTGAGATCTCGTTACC 59 105914894 105916804 AGAATATTCATCTGCACTGCTG 59 Novel Rattus norvegicus 81 AABR07061807.3 ENSRNOG00000054089 ENSRNOT00000080989 1 1 1 80 4 146300476 146306403 ACAAAGACAGTGCAGATTCG 59 146306446 146306464 GAGGGAGTATCCCAAGCAG 59 Novel Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 2 1 1 65 14 112997204 112997225 TGTCTTCACCTACTAGGAAGGA 60 112969560 112997180 ACCCATTGTAACATGACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000083213 2 1 2 60 10 99706345 99706365 TATTAACATGGGCCACATCTG 58 99668368 99668391 GATTAAATGACTTCTGAGTCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062046.1 ENSRNOG00000057403 ENSRNOT00000084248 2 1 1 61 4 158762663 158791070 CAGAATCATTGCCAGGCTC 59 158791092 158791113 GGCTTTCTGATCATTCCATGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07062061.1 ENSRNOG00000053096 ENSRNOT00000083680 1 1 1 88 4 159340943 159341288 GACTTCACTGTACAGCTGG 58 159340873 159340892 TATCTCTTCCAACCCATGCA 59 Novel Rattus norvegicus 81 AABR07001019.1 ENSRNOG00000054169 ENSRNOT00000090610 2 1 1 81 1 34013294 34013314 CAAGGTACCAAGAATTGAGGA 58 34011887 34013252 GATGCAGATGAAAGACCCTC 59 Novel Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 3 1 1 61 4 161342598 161387683 GTTTGACCAAGCACAAGCT 59 161387708 161387726 AATACTGCTCTGAGCCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030832.1 ENSRNOG00000055043 ENSRNOT00000077850 2 1 1 92 10 105426368 105426387 ATGATGGAGAAACCTGAGCC 60 105426177 105426313 ATCGGTGATCTTGGTCAGG 59 Novel Rattus norvegicus 81 AABR07001061.1 ENSRNOG00000055880 ENSRNOT00000089512 1 1 1 80 1 36589368 36589387 CATATGCAGCAAGACACAGG 59 36589426 36683699 AGATGTCCAATACTGTACAGGAG 60 Novel Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 1 1 1 62 4 162999667 162999685 AACAGCTGTACAGAAGCCT 59 162999710 163008805 TCTTTGTTTGTCCGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001207.1 ENSRNOG00000054466 ENSRNOT00000082710 1 1 1 105 1 38835338 38835359 ACCTCAAGGGAAGTCTAATGAC 60 38830148 38835273 TTTGTGAATCTCTGCACTGC 59 Novel Rattus norvegicus 81 AABR07049520.1 ENSRNOG00000058765 ENSRNOT00000088258 2 1 1 89 5 125571207 125571225 AAGTGAAGGGTCAGACTGC 60 125567383 125571155 CATCTCATGTTCAGGGAGCT 60 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000088504 3 1 3 138 1 38842214 38859595 GAAAGCATGCATGAGTATCCG 60 38842096 38842117 CATGTACATCAGCATTTAGGCA 59 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086246 1 1 3 116 1 38842055 38842073 AAACTCAGCAAGAAGCCAG 58 38836991 38837009 CATACTTGGTCCTGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000091841 1 1 2 80 15 20340938 20341993 AACTGTATACTGTGGGTTTGGT 60 20342033 20342052 GATGGTAGGTCTGAGCAGAG 59 Novel Rattus norvegicus 81 AABR07001416.3 ENSRNOG00000060413 ENSRNOT00000086422 3 1 1 90 1 42981278 42981296 AGTGGAGGACTACAAGAGC 58 42980745 42980921 GTCTACATCCTTCTTCAGGGT 59 Novel Rattus norvegicus 81 AABR07017528.1 ENSRNOG00000061188 ENSRNOT00000080361 3 1 1 61 15 25408845 25408864 AACGGCTTTATTATGCACGT 59 25408888 25412238 CAACGGTGTGAAGTAGCTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07062453.1 ENSRNOG00000051774 ENSRNOT00000085633 2 1 1 112 4 177687314 177688603 TCTCTTGCAGTACAACTCCA 59 177687221 177687239 ACAACTAGGCTCTAAGCCA 58 Novel Rattus norvegicus 81 AABR07001448.1 ENSRNOG00000059546 ENSRNOT00000087973 3 1 1 105 1 44818213 44818231 CTTTGACTGAGCAGAGTGG 58 44818299 44834904 TTTCTTCTTTCTCTGCAGCC 59 Novel Rattus norvegicus 81 AABR07049695.3 ENSRNOG00000052757 ENSRNOT00000077735 3 1 1 89 5 133717836 133720409 CCAGAGTCTATGTGTAGTTTCC 58 133720455 133720477 GCTTCCTGGATTCTATATCTTCC 58 Novel Rattus norvegicus 81 AABR07001464.1 ENSRNOG00000053052 ENSRNOT00000089275 3 1 1 81 1 45826187 45826206 ATCTGCTGTCTAGACATCCA 58 45823380 45826144 GAGAAAGGCCTTGTTTATGC 58 Novel Rattus norvegicus 81 AABR07062528.1 ENSRNOG00000057693 ENSRNOT00000083722 2 1 1 102 4 181235365 181236676 TTGGATTTGAGAGCTGGCA 60 181236741 181236760 GAACAAGTTTCTCTTCCGGC 60 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 1 2 3 80 1 47513321 47513705 GTCCACGTTCAGAAGAAGG 58 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AC135285.3 ENSRNOG00000059920 ENSRNOT00000078346 1 1 1 144 18 28330024 28337248 AAGAACAGCTTGTGGTCCT 59 28337356 28337374 GTTCTCTTGAGGCCCAGAG 60 Novel Rattus norvegicus 81 AABR07062885.2 ENSRNOG00000057197 ENSRNOT00000090924 2 1 1 93 6 12716924 12716942 CACATGGCAAGATCCAGAC 59 12714958 12714976 AAACTCCAAGTTCACCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC097037.3 ENSRNOG00000052966 ENSRNOT00000087313 2 1 1 80 15 32975253 32975684 GTTGGAATTTCCTCACTCCTG 59 32975193 32975212 ATACAAGGGAGAACGCAGAG 60 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000085288 1 1 2 80 5 143189506 143194661 AAATGTCCCAGGAATCCAC 57 143194705 143194723 AATTCCAGAAGTGAAGGGC 58 Novel Rattus norvegicus 81 AC116285.1 ENSRNOG00000052566 ENSRNOT00000081190 3 1 1 81 15 34098506 34100426 CATTGTTCCCAAAGAACCCG 60 34100468 34100488 CCTTCCATCCTTCTTAGACCA 59 Novel Rattus norvegicus 81 AABR07031952.1 ENSRNOG00000060469 ENSRNOT00000087148 3 1 1 93 18 40397761 40397780 TGTAAGGTTGGAAAGGACGA 59 40300864 40397705 ATCTTGTCAGTGCCCAGTC 60 Novel Rattus norvegicus 81 AABR07031989.1 ENSRNOG00000055180 ENSRNOT00000081941 2 1 1 82 18 42069714 42069732 CTTCGCCTGATCTCAATGC 59 42069777 42077588 CAGCAAATAGCAATCTGGCA 59 Novel Rattus norvegicus 81 AABR07032119.1 ENSRNOG00000056227 ENSRNOT00000087183 1 1 1 86 18 47266274 47266293 GAAGTCTACAACCAGCAGTG 59 47265967 47266226 AGGAAGAACCTGAGGTAACC 59 Novel Rattus norvegicus 81 AABR07050017.2 ENSRNOG00000059632 ENSRNOT00000079596 2 1 1 80 5 148495221 148495968 ATGGATGGGAGGATGATGAG 59 148495160 148495180 CAGACTACTCACCCTGTAGTC 59 Novel Rattus norvegicus 81 AABR07063565.1 ENSRNOG00000054675 ENSRNOT00000089202 3 1 1 60 6 35451407 35451426 TGATGAGTGCAGAATGAAGC 59 35451366 35451385 TGCTTGGAGGAAGACTTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001780.1 ENSRNOG00000056729 ENSRNOT00000087541 3 1 1 92 1 57667188 57667207 GTCAGCTAATATCGCCTCCT 59 57667262 57667376 TCTTGGGTTTCCAGCTCTG 60 Novel Rattus norvegicus 81 AC141344.1 ENSRNOG00000054578 ENSRNOT00000089733 1 1 1 72 5 154431296 154431314 CAAATCGGATGCAACAGCA 60 154428921 154428939 CTCAGAATGCTTGCTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001926.2 ENSRNOG00000051875 ENSRNOT00000090676 2 1 1 84 1 62208083 62223194 AGCAATAGATTCTGGGTGCT 59 62208018 62208036 GATACACAGGTGACCGAGG 60 Novel Rattus norvegicus 81 AABR07001929.1 ENSRNOG00000059824 ENSRNOT00000089634 1 1 1 60 1 62359995 62360017 GGTGAAGAAAGAGTAAAGACTCC 59 62333380 62333400 CTGTATCAGGAACAAACACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07063636.1 ENSRNOG00000052000 ENSRNOT00000078407 1 1 1 83 6 38339525 38339982 TTATCAGGTAGCCACAAGAGG 59 38339462 38339480 ACTGAGTTGGCTAGGAAGC 59 Novel Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 3 1 1 131 6 38807589 38807607 TTGTTTGTTCTTGGAGGGC 59 38806293 38807495 TTTGTCTTTGTGGTTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC095289.1 ENSRNOG00000054836 ENSRNOT00000082256 3 1 1 96 18 55937338 55938626 AGAGCTCAGAGTACACAGAG 58 55937261 55937281 TCGTACCTTCAGATTTGAGCT 59 Novel Rattus norvegicus 81 AABR07032267.1 ENSRNOG00000058761 ENSRNOT00000083384 2 1 1 89 18 58323855 58323876 CCCACATAAACAAATGATCTGG 58 58320390 58323806 AGGCGTATCAAATTTCCTGG 58 Novel Rattus norvegicus 81 AABR07063654.1 ENSRNOG00000051754 ENSRNOT00000080278 3 1 1 95 6 40140391 40140413 GTCAGATAGAAGACTTCTACACC 58 40137559 40137578 AGTTTCCACAATTTCTCCCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032296.1 ENSRNOG00000058084 ENSRNOT00000079632 1 1 1 80 18 60253343 60254427 TTAATCTGGTGTGGGAAACTG 58 60254469 60254487 TTCTAGACTGGGCAGAGAC 58 Novel Rattus norvegicus 81 AABR07018438.1 ENSRNOG00000054138 ENSRNOT00000089311 1 1 1 60 15 57860574 57860593 CAGGTCTTCATGTTTGACCA 58 57860750 57860768 GCTTTCTGTTTCACTGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018447.1 ENSRNOG00000057931 ENSRNOT00000090053 3 1 1 92 15 58308022 58308040 GACACTTCTTGGGAGAGCA 59 58307769 58307966 TACCTCTTCCCAAGAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018457.1 ENSRNOG00000051407 ENSRNOT00000078684 3 1 1 77 15 58726318 58726337 TGTTGCAGTCAGGAAATCTG 59 58727285 58727303 GATTCCAATAGCGCCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018476.1 ENSRNOG00000056070 ENSRNOT00000086211 2 1 1 80 15 60689342 60691060 GGAGAAAGATGCTCCCTCC 60 60689280 60689298 GAGATCACCTGCCTCTGAC 60 Novel Rattus norvegicus 81 AABR07050644.1 ENSRNOG00000056236 ENSRNOT00000087806 1 1 1 80 5 171914123 171914599 CCATTATCAAAGCAAGGTGGA 59 171914640 171914659 GTTCTGCCATACGTTGACAC 60 Novel Rattus norvegicus 81 AABR07063743.2 ENSRNOG00000054777 ENSRNOT00000083510 3 1 1 80 6 45469152 45470689 CATCAGAGGTCTTTATAGACTCC 58 45469094 45469113 CCAGGAACCAAACAGTATCC 58 Novel Rattus norvegicus 81 AC130035.2 ENSRNOG00000055931 ENSRNOT00000079780 3 1 1 104 5 172891808 172891826 TGCTGCCCTCAGATAAGAG 59 172891178 172891198 GTTTCCAGGATACAGATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000089212 3 1 2 82 18 68552207 68552736 TTTACCAGTCAGGAGGACAC 59 68552144 68552163 TGGTAAGATCTGCTAGGGTG 59 Novel Rattus norvegicus 81 AABR07018837.1 ENSRNOG00000059235 ENSRNOT00000088967 2 1 1 81 15 75319064 75331265 AGGAATAAACGGTTACATGAGG 58 75331305 75331325 AACTGGAAATGTAGTTCCTGG 58 Novel Rattus norvegicus 81 AABR07063863.1 ENSRNOG00000058673 ENSRNOT00000089403 1 1 1 80 6 52962480 52969238 ACATCGATGGTGTACACGT 59 52962418 52962437 TGTTGGGCCTCTATGTAGTG 59 Novel Rattus norvegicus 81 AABR07063863.1 ENSRNOG00000058673 ENSRNOT00000089403 3 1 1 81 6 52962481 52969239 CACATCGATGGTGTACACG 59 52962418 52962437 TGTTGGGCCTCTATGTAGTG 59 Novel Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613,ENSRNOT00000088122 2 2 2 80 15 87487130 87491039 TGTTACCAGATTGCCACAC 58 87487068 87487087 CTCTTGAAGCAGCTATCTGG 58 Novel Rattus norvegicus 81 AABR07032621.1 ENSRNOG00000054472 ENSRNOT00000086452 3 1 1 78 18 73981157 73981178 ACAAACAGATAACAGGAAGAGG 58 73971654 73971672 TTTCCGGAGGACTCATCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032640.1 ENSRNOG00000061277 ENSRNOT00000090840 2 1 1 80 18 75548960 75548981 AGAACTTAGAACAAGTTGCTGC 60 75549022 75549822 CTTGGTGGAGGAAGACCTG 60 Novel Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000089772 3 1 2 60 1 94093051 94093071 CAGAATCCTTACGTGAACTCC 59 94093011 94093029 GGTCACCTTCCAAAGTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051639.1 ENSRNOG00000058342 ENSRNOT00000078895 3 1 1 80 3 18562213 18562357 GATTACAGATGCCATATGTGAC 57 18562398 18562416 ATGGAGACAGTTTCTCCCA 58 Novel Rattus norvegicus 81 AABR07033270.1 ENSRNOG00000051555 ENSRNOT00000087049 1 1 1 80 11 14307016 14307436 AAGATATAAGGGAAGTCTGCG 57 14307475 14307496 CTTGTTGTAGAATTGCCTTCTG 58 Novel Rattus norvegicus 81 AABR07033270.1 ENSRNOG00000051555 ENSRNOT00000087049 3 1 1 80 11 14307485 14346453 TTCTACAACAAGACAGAGTGAG 58 14346493 14346512 CCAGTGTACGTTATCATGCT 58 Novel Rattus norvegicus 81 AABR07033271.1 ENSRNOG00000052428 ENSRNOT00000089620 2 1 1 80 11 14545612 14545632 CAAGATAGAGCTTTCACTGGG 59 14545674 14576106 CACAGTAGCCTTTCGTCTG 58 Novel Rattus norvegicus 81 AABR07064840.1 ENSRNOG00000061310 ENSRNOT00000088224 1 1 1 91 6 97456282 97457244 ATGAGACAACTGAACGGCT 59 97457299 97457317 TTCTGAATGAGCTGCTCCC 60 Novel Rattus norvegicus 81 AABR07033283.1 ENSRNOG00000059856 ENSRNOT00000085016 3 1 1 81 11 15377894 15377913 CAAGCTAAACACTCTGGACG 59 15375947 15375965 CATAACGGTGTTCGAACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.2 ENSRNOG00000061836 ENSRNOT00000085091 1 1 1 80 3 21442537 21442556 AAGACAAGGAAATGGTCCTG 58 21441773 21442494 CTGAGCAAACTCTTCTCCA 57 Novel Rattus norvegicus 81 AABR07020367.1 ENSRNOG00000054848 ENSRNOT00000079581 1 1 1 92 13 23456520 23456539 AGGAGAAAGAAGGCATCAGG 60 23456594 23468409 GCTTGAATTCTCCTTGCCC 59 Novel Rattus norvegicus 81 AABR07020367.1 ENSRNOG00000054848 ENSRNOT00000079581 2 1 1 93 13 23456520 23456539 AGGAGAAAGAAGGCATCAGG 60 23456595 23468410 GGCTTGAATTCTCCTTGCC 59 Novel Rattus norvegicus 81 AABR07003167.1 ENSRNOG00000053427 ENSRNOT00000089780 1 1 1 83 1 97063600 97063618 GAACAAGGCAGGATTCGAG 59 97063662 97065892 AGTCGAAAGTTCATAACGTCAG 59 Novel Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000079890 3 1 2 82 1 104282221 104282239 TACAGAGCAAGACTGGCTG 59 104286914 104286935 TCATCTTCCTTCATGTGGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC094784.1 ENSRNOG00000059931 ENSRNOT00000084426 1 1 1 121 11 30977552 30978838 AGTCTTCGGTCTACAGAGAC 58 30978919 30978940 GTCACAGTCTGTCTTTATCCTC 58 Novel Rattus norvegicus 81 AABR07003310.1 ENSRNOG00000052766 ENSRNOT00000084269 1 1 1 63 1 105036254 105036272 TAAGCTTGGCAAGTATCGC 58 105036969 105036987 CTTTCTCTGAGGACTTGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07020952.1 ENSRNOG00000058523 ENSRNOT00000085706 3 1 1 86 13 48379054 48379072 AGGGTGTTCTAACCAACGG 60 48379120 48380765 GATGCATGTCACAGAACTGAG 59 Novel Rattus norvegicus 81 AABR07033666.1 ENSRNOG00000055823 ENSRNOT00000085292 3 1 1 109 11 34313561 34313580 ACTTCGAGGCTATGGAACTG 60 34310346 34310368 GGCTGAGCATATTCTAGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052263.1 ENSRNOG00000055184 ENSRNOT00000077232 2 1 1 60 3 43694967 43694985 GTAGAGCTAACAGGGACCA 58 43695006 43695027 GACTTCTGTATTGTCAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052388.1 ENSRNOG00000054733 ENSRNOT00000077132 1 1 1 80 3 50657396 50657414 GGACAATTGCAAGATGCAG 58 50657456 50657757 CATTAATTCCGCAGATCTTCC 57 Novel Rattus norvegicus 81 AABR07033869.1 ENSRNOG00000057860 ENSRNOT00000084139 1 1 1 98 11 41883703 41884189 ACCCACAGTTGTTCAAACC 59 41883623 41883641 ATTCACTGAAACCCAGCAG 58 Novel Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 2 1 1 65 3 53506076 53506094 GTGAGTGAAGTCAACCCAC 58 53444379 53506047 AAACACCTTGCCAAACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052441.1 ENSRNOG00000052018 ENSRNOT00000092009 2 1 1 81 3 54152875 54220212 TTGTGCTATGGATTCTGCA 57 54220257 54220275 CTTCGTCTCCATTGGTCTG 58 Novel Rattus norvegicus 81 AABR07003468.1 ENSRNOG00000058191 ENSRNOT00000082080 1 1 1 80 1 110995833 111001830 GAGACAGAAATGCAGAGAATTCC 60 111001867 111001888 ACACAAGCACAGAAGAATAACC 59 Novel Rattus norvegicus 81 AABR07065312.1 ENSRNOG00000057714 ENSRNOT00000088639 2 1 1 99 6 120649369 120649387 TCAGGCACTTCTCCATGTC 59 120636336 120649309 TGTAGGTCACCTATATCCAAGG 59 Novel Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 2 1 1 60 11 64195356 64195378 TCTGTAAACTACTACCGAAGGAC 60 64195397 64225617 CCTTTGGGTAGGAGAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 2 1 1 61 11 72450096 72450114 GAACCTCACGAATCTTGCT 58 72450137 72450508 TGTAACTCTTCAGATTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021635.1 ENSRNOG00000057731 ENSRNOT00000084244 1 1 1 98 13 83108869 83110827 TACACTATTGTTCGCCCGT 59 83108789 83108808 AGGAAGGAACTGGAACTCTC 59 Novel Rattus norvegicus 81 AC133316.3 ENSRNOG00000061032 ENSRNOT00000083671 2 1 1 73 6 127276978 127282051 GGCATTCAGCAGGTAAAGAG 59 127276924 127276943 GATCACCTCTTTGCTTTGGT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 2 1 1 60 3 66075105 66080120 GGAAGAACATCCACTACATACTC 59 66075067 66075085 CAGTGTAGACCTGACACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.1 ENSRNOG00000059969 ENSRNOT00000086490 2 1 1 94 13 90171084 90171414 GTCCATTCGACAATTTAGGAGTG 60 90171468 90171486 CTGGCTATTGCATGCATCC 60 Novel Rattus norvegicus 81 AABR07034636.1 ENSRNOG00000056037 ENSRNOT00000083950 2 1 1 80 11 81936523 81936668 ACAACAGGAAGATCAGAAGGA 59 81936710 81936728 TCCTTAGTCCTCTTGCACC 59 Novel Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 1 1 1 60 13 90221497 90238740 GCAACAGCAAGGTAACTGG 60 90221455 90221474 CATTGGGAGCTCATTCTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052639.1 ENSRNOG00000057160 ENSRNOT00000090066 2 1 1 86 3 67414430 67414450 CAACCTGATGTGACTTTGAGC 60 67414498 67414757 TTCCGTTGTGTCCTCTTCC 60 Novel Rattus norvegicus 81 AABR07034718.1 ENSRNOG00000057994 ENSRNOT00000087203 1 1 1 60 11 85053719 85053738 TTTATTGGGTTCTTGTGGCT 58 85053872 85053890 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 3 1 1 63 13 95698469 95702829 AAAGGTCTCCGTTCACAGG 60 95698424 95698442 CTTACTTCTTGAGACCGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071917.1 ENSRNOG00000057496 ENSRNOT00000078442 2 1 1 81 1 128398437 128398456 CTACTCCAGGACAGGAAACG 60 128418792 128418810 CTAGGGAAGAAGCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072264.2 ENSRNOG00000052689 ENSRNOT00000089244 3 1 1 85 11 86921985 86923576 CACCCAAGCAAAGGAATGG 59 86921918 86921936 AGTACTGGGCTCTGTACCT 59 Novel Rattus norvegicus 81 AABR07021996.1 ENSRNOG00000051880 ENSRNOT00000082633 2 1 1 80 13 101956921 101958373 TTCTCTAGCAATGTGATGTACC 58 101958413 101958432 TGGAAAGGACTGGATAATGC 58 Novel Rattus norvegicus 81 AABR07052923.1 ENSRNOG00000054354 ENSRNOT00000078869 2 1 1 92 3 84364906 84366907 CTGAGAATGGCTAGAGTATTACAC 59 84366955 84366976 ACACATACTTTCCAATTCTCCC 59 Novel Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 3 1 1 60 12 6602695 6602714 GATCCTCTATGGCGATGACC 60 6592709 6592730 TTCACCTACAGATGTCAGAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024444.1 ENSRNOG00000051437 ENSRNOT00000091395 3 1 1 83 16 328447 328466 CCCATCTCCAGAGTAGACAC 59 328512 332793 TCCTTTGAATCTGGCCAGG 60 Novel Rattus norvegicus 81 AABR07053471.1 ENSRNOG00000053580 ENSRNOT00000077088 3 1 1 81 3 108720536 108720558 CATATCATGGAATATCACTGCCC 59 108689044 108720495 CCAGGTTTGCTCCATTCTG 59 Novel Rattus norvegicus 81 AABR07004530.1 ENSRNOG00000056445 ENSRNOT00000084442 3 1 1 83 1 147157923 147158116 AATAAAGGCCTTGGAATTGC 57 147157859 147157879 CAAATTCTGCAAGGTCATGAG 58 Novel Rattus norvegicus 81 AABR07035506.1 ENSRNOG00000059429 ENSRNOT00000088655 2 1 1 100 12 18421365 18421383 CCATCTCATTCACAGAGCC 58 18419681 18421302 GAGTTGGGTGTAACTGAAGG 58 Novel Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 3 1 1 75 3 109814075 109814093 ACTTCTGACAGTCCTGCTG 59 109811961 109814036 GCAGAGACAAAGCTGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066782.2 ENSRNOG00000060676 ENSRNOT00000089080 2 1 1 80 9 16145592 16145613 AACTGACTTGCTTATGTTAGGC 59 16145652 16149622 CAATTAACTGCATCAGCTCCA 59 Novel Rattus norvegicus 81 AABR07035717.1 ENSRNOG00000060527 ENSRNOT00000077381 2 1 1 89 12 21370917 21373047 CCATTGTCCATGCACTCAG 59 21370846 21370864 GATCTCCTGTGTCCTCCAG 59 Novel Rattus norvegicus 81 AABR07024799.3 ENSRNOG00000060232 ENSRNOT00000087217 1 1 1 91 16 17223712 17237469 TCTTGCAAACAGAGCACAG 59 17223639 17223657 CTTGGAGGACACATGACAC 58 Novel Rattus norvegicus 81 AABR07024869.2 ENSRNOG00000060135 ENSRNOT00000087628 1 1 1 81 16 20154208 20154510 GTACATGGCAAAGGTGAGAG 59 20154146 20154164 CTCAGCAGGCAAAGATGTG 59 Novel Rattus norvegicus 81 AABR07066957.1 ENSRNOG00000054358 ENSRNOT00000079184 1 1 1 111 9 23714485 23720981 CATTGGAGGTATCATAGCAGTG 59 23721053 23721071 CTCCTTCGTCTGATTGGTG 58 Novel Rattus norvegicus 81 AABR07053854.1 ENSRNOG00000059080 ENSRNOT00000078079 1 1 1 80 3 131100708 131105615 GCACTAAAGATAAAGCAGCTG 58 131105657 131105675 TTGCTTTGGCAACATAGGA 58 Novel Rattus norvegicus 81 AABR07054025.2 ENSRNOG00000058266 ENSRNOT00000087994 3 1 1 72 3 136374253 136376515 TTGTAGAAAGTTTGTCCCTTGG 59 136376548 136376566 AATGCACCTCAGGTCAGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07005572.1 ENSRNOG00000051432 ENSRNOT00000084979 1 1 1 94 1 188161720 188166051 GGCTTGGGATAAATTACAGAGC 60 188161647 188161665 GATTCACAGCTGCTCTGGA 60 Novel Rattus norvegicus 81 AABR07036024.1 ENSRNOG00000052944 ENSRNOT00000081483 1 1 1 80 12 30946799 30948808 GACGGGAGGTCTTAAACCC 60 30948852 30948870 GAGAGCAGGCAGATATCGG 60 Novel Rattus norvegicus 81 AABR07036080.2 ENSRNOG00000054502 ENSRNOT00000087264 3 1 1 88 12 33700250 33700273 GAAGTATTGAAGATGAGAAGACCC 59 33700320 33719519 CATGCTTTCCTGCAATCGA 59 Novel Rattus norvegicus 81 AABR07025958.1 ENSRNOG00000057980 ENSRNOT00000091333 1 1 1 80 16 56485886 56523229 GAGGACTTCAATTGGACTGAC 59 56523267 56523289 CCAGTTACTGAATCCATCATCTC 59 Novel Rattus norvegicus 81 AABR07005779.3 ENSRNOG00000054961 ENSRNOT00000086620 3 1 1 60 1 198242837 198242855 CTACCTTGTTGCTTCCCAC 59 198242795 198242813 AGCACCAAATAGATGCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 3 1 1 66 16 58774473 58777751 ATAGAAGAGTCTGCCCGGA 60 58774425 58774443 CACAGGAACACGTTCTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067469.2 ENSRNOG00000053542 ENSRNOT00000092197 2 1 1 80 9 47970458 47970478 TAAGTACTTCGTGATCCCACC 59 47970514 47970636 CTGATGAGGAATAAGTTGGATTCAG 60 Novel Rattus norvegicus 81 AABR07054437.1 ENSRNOG00000055407 ENSRNOT00000082230 2 1 1 80 3 153830442 153830461 CAGAGACTCAGATTCACTCC 57 153830154 153830400 TGTCACATTGTACCTCAAGG 58 Novel Rattus norvegicus 81 AABR07067471.2 ENSRNOG00000052452 ENSRNOT00000077855 2 1 1 86 9 48091104 48091122 GGGCGATTCACTACATCAC 58 48091172 48102248 CACTGTCCATCTCTTGAGC 58 Novel Rattus norvegicus 81 AABR07005808.1 ENSRNOG00000052932 ENSRNOT00000081320 2 1 1 86 1 200782122 200782140 CAAGACTTTCAAGCTGCCC 60 200767587 200782075 TTTCAGATATTCGACCTCTCCA 59 Novel Rattus norvegicus 81 AABR07067507.1 ENSRNOG00000055791 ENSRNOT00000081317 3 1 1 62 9 50095275 50095294 TCCATGATCATGGGACTCTG 59 50094681 50095253 CAGGTTAGACAATCCATATCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07005949.1 ENSRNOG00000059505 ENSRNOT00000091989 2 1 1 81 1 208274726 208274744 GGGAGGTCTACCACTTCTG 59 208274788 208308094 CTTGTGCAGAATGTCCTCTG 59 Novel Rattus norvegicus 81 AABR07054565.1 ENSRNOG00000053069 ENSRNOT00000079564 1 1 1 80 3 160993357 161013962 GAAGAGGCAGGAGGAAGAG 59 161014004 161014024 TGGGTAGTGAATGTTCTTCCT 59 Novel Rattus norvegicus 81 AABR07036532.1 ENSRNOG00000053108 ENSRNOT00000090696 2 1 1 123 12 46964892 46971666 GAAGTGCGTCAAGTGATCG 59 46971753 46971771 CATCTGCCGTAGGTAACGT 60 Novel Rattus norvegicus 81 AABR07067852.1 ENSRNOG00000061019 ENSRNOT00000085370 3 1 1 81 9 67817148 67817167 AAAGTGCAGTCACTGTTACG 59 67817210 67824364 CATAGCCAGTTCCTTGTCAG 58 Novel Rattus norvegicus 81 AABR07067871.1 ENSRNOG00000057686 ENSRNOT00000083802 1 1 1 111 9 69695914 69695932 GACACTTCAGGCATCTGAC 58 69696007 69697276 ATTCTTGTTACCTGCTGCA 57 Novel Rattus norvegicus 81 AC141169.1 ENSRNOG00000054948 ENSRNOT00000084821 3 1 1 137 9 69991266 69991284 GAAGACAAGACGTAGCAGC 59 69987089 69987107 TCACTCAAGCTGCACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026397.1 ENSRNOG00000059629 ENSRNOT00000084351 2 1 1 81 16 74986192 74986210 TATGACCCTAAGCGCTTCC 59 74986010 74986147 ACAACATTTCCTCGAGGGT 59 Novel Rattus norvegicus 81 AABR07054755.2 ENSRNOG00000060549 ENSRNOT00000080717 3 1 1 80 3 168785836 168787676 CACTGTATAAAGAACACCAGCTC 60 168785778 168785800 CTTCTAAATCTTTGCTCCAGTCC 60 Novel Rattus norvegicus 81 AABR07036679.1 ENSRNOG00000054596 ENSRNOT00000081300 2 1 1 91 X 259513 259532 CTAATGCTTGGATCCCTGAC 58 259586 260123 CTCTTGTCCACTTGAGCAG 58 Novel Rattus norvegicus 81 AABR07026447.1 ENSRNOG00000057882 ENSRNOT00000084958 1 1 1 80 16 77130341 77136771 AAGGCATTCAAGGAAAGGAG 58 77130280 77130300 ACATAAGTGAGGATGATTGGC 58 Novel Rattus norvegicus 81 AABR07054809.1 ENSRNOG00000052782 ENSRNOT00000091217 1 1 1 61 3 169966070 169966088 TTTATTCCAGCAACGGCTG 59 169966194 169966213 TCATTCTGAAGCAGAATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC131024.2 ENSRNOG00000058055 ENSRNOT00000086662 1 1 1 64 3 170332311 170334188 GGGCTTCTATTGGATATGTCCT 60 170332268 170332286 TTGATCTGCGTCCTCTTCC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 2 1 1 60 1 227289032 227289054 CAGCCTGAAGAAACTTCTAAAGG 60 227289074 227290252 ACACATGATCTGGATTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026503.2 ENSRNOG00000058205 ENSRNOT00000084677 1 1 1 60 16 79480083 79480101 CACAACCTTCTCAGCATGG 59 79477534 79477554 GTCTTGTGAGATAACCAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037897.1 ENSRNOG00000057833 ENSRNOT00000083859 1 1 1 80 X 35164937 35164957 GGAAAGACTGTATTTCTGCTG 57 35162515 35164896 TGACATTTCTATTTGCGGGT 58 Novel Rattus norvegicus 81 AABR07072528.1 ENSRNOG00000056333 ENSRNOT00000077932 1 1 1 88 16 82357732 82357750 TCTGACTGGGTCTTGAAGC 59 82357799 82359110 TGACTGGAATTCTTGTCTTCAG 58 Novel Rattus norvegicus 81 AC098189.1 ENSRNOG00000054082 ENSRNOT00000091354 1 1 1 84 9 94269468 94269486 CACATTTGTGCAGGAGAGC 60 94269534 94270181 AAGGTACAGAACTTGGCCT 59 Novel Rattus norvegicus 81 AC117971.2 ENSRNOG00000059452 ENSRNOT00000083273 2 1 1 64 7 19840749 19840767 CTACTAGACGGAGTCTGGG 58 19839404 19840724 ACGAACTACCCAAACATATTCG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07068341.1 ENSRNOG00000059110 ENSRNOT00000077785 1 1 1 80 9 99565467 99565983 GTGCTAAAGAAAGTGAAGTCAC 58 99566022 99566042 AAGACTCTGAAGTTCATCCAG 58 Novel Rattus norvegicus 81 AABR07039236.1 ENSRNOG00000059710 ENSRNOT00000082144 1 1 1 80 X 72863008 72863027 AATATTACGATTGCGACGGA 58 72859439 72862966 GCATCTTCTACACCATCTCC 58 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000083393 1 1 2 80 7 20856780 20856799 ATGCTTCAGTCATGTTCAGG 58 20849921 20856740 AGACCTGTTTCCTAATGATCTC 57 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000083393 3 1 2 80 7 20856779 20856798 TGCTTCAGTCATGTTCAGGA 59 20849920 20856740 GAGACCTGTTTCCTAATGATCTC 59 Novel Rattus norvegicus 81 AABR07026663.1 ENSRNOG00000053302 ENSRNOT00000080629 1 1 1 82 16 88583568 88583587 CCACCTTGTGAAGTTTCCAC 59 88573102 88583523 CACTTTCAGCACCATCTCG 59 Novel Rattus norvegicus 81 AABR07026668.1 ENSRNOG00000060488 ENSRNOT00000089987 1 1 1 134 16 88852443 88852461 ACATTGCAGTTGCAATGCA 60 88851166 88851184 GCACTAGCTGAGTCTTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026778.1 ENSRNOG00000061436 ENSRNOT00000078120 1 1 1 124 17 445566 445584 ATCAGACGATTTGTGCACG 59 448744 448762 ACACGTAAGCTTCCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC113773.1 ENSRNOG00000057564 ENSRNOT00000081284 3 1 1 89 1 255127837 255135102 TTGGAAACCATTCTAGCCAC 58 255135154 255135172 CAGGAAGTACAATCCGAGC 58 Novel Rattus norvegicus 81 AABR07042654.2 ENSRNOG00000060296 ENSRNOT00000077455 1 1 1 80 19 1596806 1601287 GTTCAAAGGCTAAGATGTTCTG 58 1601325 1601346 CAATCTGCTGGAGAATAAACTG 58 Novel Rattus norvegicus 81 AABR07042662.1 ENSRNOG00000052666 ENSRNOT00000079178 3 1 1 81 19 2085412 2085430 GTGACTGCTTCAGATCCCT 59 2088134 2088153 CGACATTCAGTCTCTGTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006854.1 ENSRNOG00000053865 ENSRNOT00000079393 1 1 1 80 1 259018930 259018948 CTTGGTGGAATGAGTGGAG 58 259018991 259024183 CAATCCGATCTTCAATGCTC 57 Novel Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 2 1 1 88 1 259107349 259111310 GATCGGTCTTCCCAAGGAG 60 259111360 259111380 ATCTTCTCCTTACTGTCACGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC096317.1 ENSRNOG00000055885 ENSRNOT00000077734 2 1 1 168 1 261923689 261923708 AGTGTCAAGACTTCAGACCA 59 261922751 261923558 GATGAGTCCCTTTCGAGCA 60 Novel Rattus norvegicus 81 AABR07027141.1 ENSRNOG00000061738 ENSRNOT00000082199 2 1 1 87 17 15153713 15153732 GCTCTATTTCCTACTGACCC 57 15153782 15155511 CCTCTTCACATCCTCTGTG 57 Novel Rattus norvegicus 81 AABR07073295.1 ENSRNOG00000057318 ENSRNOT00000088579 1 1 1 80 7 34868251 34868269 ATGCTCTTTCTGCTGAGCT 59 34867799 34868208 TACATGAGCTCTCAACAGCT 59 Novel Rattus norvegicus 81 AABR07069008.1 ENSRNOG00000052530 ENSRNOT00000082366 2 1 1 80 8 5177644 5178382 CCTCAAGCATGTACTGCAC 59 5177582 5177604 GGATGTACAAACTGGTAATCCTC 59 Novel Rattus norvegicus 81 AABR07027155.1 ENSRNOG00000057010 ENSRNOT00000078364 1 1 1 80 17 16984318 16997702 GAAACCCTGAGTACACGGA 59 16997746 16997764 CTCCTTCATGGTTTCGCAG 59 Novel Rattus norvegicus 81 AC103018.1 ENSRNOG00000059594 ENSRNOT00000079070 1 1 1 125 1 264470964 264470983 CTTGACCTTTGAAGTGCTGG 60 264471071 264472376 GAAACAAGCTGAAGGCCTG 60 Novel Rattus norvegicus 81 AABR07042825.1 ENSRNOG00000061468 ENSRNOT00000078065 3 1 1 123 19 11064656 11068176 ATCTCAAGATAAAGGGCAGGG 60 11068261 11068279 CTGGATCTGGACATCCCTG 59 Novel Rattus norvegicus 81 AABR07056730.1 ENSRNOG00000061496 ENSRNOT00000088470 2 1 1 61 7 38667422 38667441 AATAGTCCGTTGCTATCCCT 58 38667465 38679332 AAGCTGGTATTGTTGCGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042911.1 ENSRNOG00000056588 ENSRNOT00000082572 1 1 1 99 19 14644786 14646337 CCAGTCTTTATGACTGCACTC 59 14646398 14646416 TTCTGAGCAGAGACCTGAG 58 Novel Rattus norvegicus 81 AABR07056811.1 ENSRNOG00000053861 ENSRNOT00000085243 1 1 1 69 7 42113478 42113496 TTCAAGCAAAGTTCCCAGC 59 42114954 42114973 TTGTCTTAGCTTGTGAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027321.1 ENSRNOG00000056758 ENSRNOT00000091716 3 1 1 82 17 24506740 24508089 GACTGAAGAGAAACTGGAAGAG 59 24506679 24506698 CCCGATTGTCCTTATATGCA 58 Novel Rattus norvegicus 81 AABR07027381.1 ENSRNOG00000051539 ENSRNOT00000089081 2 1 1 80 17 27218581 27218601 CTCAGAGTGTTTATGACAGCA 58 27218639 27219543 CTCTTTAATAGCCACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07043098.2 ENSRNOG00000059743 ENSRNOT00000089051 1 1 1 101 19 20572457 20572475 CTAGCAGGATAGGGCTGTG 59 20572537 20587611 GACAAGCAAGGAAATTGTTCTC 59 Novel Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 1 1 1 60 19 22770723 22770742 ATTACTTCTCTTCAACGGCT 57 22770762 22775612 TTAACAGTGAGTAGGGTTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057237.1 ENSRNOG00000059128 ENSRNOT00000082384 3 1 1 82 7 62335313 62335332 GATAGCTTGAACTCTCCCGA 59 62335375 62340583 AGCTTTCTTCGTCAAGATCTC 58 Novel Rattus norvegicus 81 AABR07027431.1 ENSRNOG00000061171 ENSRNOT00000082574 2 1 1 80 17 30818770 30822339 ATGAGCTTCTGGATGTACAC 57 30822382 30822400 AGGTCTTTCTGACGATGTG 57 Novel Rattus norvegicus 81 AABR07043190.1 ENSRNOG00000055271 ENSRNOT00000084676 1 1 1 80 19 26352703 26353787 GAAACCTAAAGAGGCCTGC 59 26352641 26352659 CTCTCCTCTTCCTCGTTGG 59 Novel Rattus norvegicus 81 AABR07043276.1 ENSRNOG00000054414 ENSRNOT00000082006 2 1 1 80 19 26979284 26979305 AACTTAGAGATGGAGAACACTG 58 26979345 26981631 GAGCAGGTTTCTAGAGAAGG 57 Novel Rattus norvegicus 81 AABR07006978.2 ENSRNOG00000056528 ENSRNOT00000078517 3 1 1 90 1 274935172 274937387 CATCTTTGCATTGGCACAC 58 274937441 274937459 AGCATGACACTCTGGATCC 59 Novel Rattus norvegicus 81 AABR07069733.1 ENSRNOG00000058081 ENSRNOT00000082354 1 1 1 97 8 38422276 38422295 AGACTCCAGTGAGATTTGTC 57 38421823 38422219 GAAATGATAGTTCTGTGAGCAG 57 Novel Rattus norvegicus 81 AABR07007026.1 ENSRNOG00000052188 ENSRNOT00000083048 1 1 1 90 1 277540731 277563075 TGAAATACGCCACTGTCCT 59 277563129 277563147 ATGACAAAGTGGCAATGCC 59 Novel Rattus norvegicus 81 AC133739.1 ENSRNOG00000056082 ENSRNOT00000089585 2 1 1 80 8 39289071 39289093 GATTTCCTGGGATTAAAGGTGTG 60 39289130 39298574 AGGTTGAGAGGATCTGTAATCC 59 Novel Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 1 1 1 60 1 278516797 278516817 AAGAGTGATATCCCAGTCTCG 59 278515075 278516778 TTATCAAGTATCTCCGAATGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027693.1 ENSRNOG00000053010 ENSRNOT00000085851 2 1 1 111 17 40872953 40872973 AGAACAAAGGGAAGAACTGAC 58 40872426 40872444 AGACATCATCAGTGGATGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07043652.1 ENSRNOG00000055381 ENSRNOT00000081411 2 1 1 80 19 34016739 34018806 CTTCTCCTCATTGTTACAGAGTC 59 34016681 34016700 CTGCAGTGACTCACTAAGTC 58 Novel Rattus norvegicus 81 AABR07043652.1 ENSRNOG00000055381 ENSRNOT00000081411 3 1 1 81 19 34016743 34018808 GCCTTCTCCTCATTGTTACAG 59 34016682 34016701 TGCAGTGACTCACTAAGTCC 60 Novel Rattus norvegicus 81 AABR07043728.1 ENSRNOG00000054835 ENSRNOT00000078112 2 1 1 80 19 36491562 36493425 ACAGATCCATGCAGAACAG 58 36491500 36491519 ATGGTGGCCTTTAAGTAGGA 59 Novel Rattus norvegicus 81 AABR07007391.1 ENSRNOG00000058141 ENSRNOT00000080120 3 1 1 80 2 12130304 12130328 TCTCACCCTAGATGATATTGAAAGG 60 12128485 12130267 CTTCTCCAATCTGGTTCCCA 60 Novel Rattus norvegicus 81 AABR07040797.1 ENSRNOG00000061692 ENSRNOT00000088702 2 1 1 80 X 110482732 110484082 CTTTGTACAAGTTGGAGACCT 58 110482672 110482692 CTTTGTAATGACCAAGAGCCT 58 Novel Rattus norvegicus 81 AABR07029217.2 ENSRNOG00000051654 ENSRNOT00000086992 1 1 1 87 10 15772836 15772854 GGCACTTCCTCAACAAAGG 59 15772014 15772787 AGTAGGAGGTTTAGTGCATCC 59 Novel Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 3 2 2 80 X 113550887 113550906 CCTGCAAACAACTATGGGTG 60 113550948 113581954 CTGAGGAGGTGTCTTTCCAG 60 Novel Rattus norvegicus 81 AABR07040959.1 ENSRNOG00000056071 ENSRNOT00000091436 1 1 1 60 X 115910649 115910669 GCTTTCTATGCAAGAAAGACC 58 115910686 115910709 CTACTTACTCTTAAGGAAGGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 1 1 1 76 2 22864608 22867898 TTGTTTGCCAGACAAAGGG 59 22864550 22864568 AATGTCATGGGAGAGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC119699.1 ENSRNOG00000051385 ENSRNOT00000088890 3 1 1 81 10 16514366 16514576 ATGGACCGTAACGGTTACAG 60 16514304 16514324 ACGCTATAGAAACCATCCCTG 60 Novel Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 1 1 1 60 8 53831987 53832005 CAGATCAGTGTTCCATGCC 59 53832029 53837373 CTCTGAAGTTGAGAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058134.1 ENSRNOG00000055252 ENSRNOT00000089725 1 1 1 80 7 101983834 101998434 AAGTAGTCATAGGAGACCTGG 58 101998476 101998494 GTGACATGTACACATGCCT 58 Novel Rattus norvegicus 81 AABR07029391.1 ENSRNOG00000058347 ENSRNOT00000083201 1 1 1 62 10 26258479 26261367 GTGTGCAGAGAAAGTTTCTC 57 26261389 26261410 AGCTCATGACGATAATCTTGAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07070161.3 ENSRNOG00000054536 ENSRNOT00000080447 1 1 1 68 8 55526252 55526270 ATTGCTTCTTGTCTGCCTG 59 55523993 55526222 GCTCTGATAGAAGAAGGAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007717.2 ENSRNOG00000057200 ENSRNOT00000089946 1 1 1 80 2 25546603 25547290 TACAGTTGAACTGCACAATGG 59 25546543 25546562 CCATTGTCTGACATCCAAGG 59 Novel Rattus norvegicus 81 AABR07041724.2 ENSRNOG00000061916 ENSRNOT00000080023 2 1 1 80 X 137709493 137709512 CTTTAAAGCACAGAACTGCC 58 137706349 137709451 TCTCTGAAGACATTCGACAC 57 Novel Rattus norvegicus 81 AABR07058410.3 ENSRNOG00000058353 ENSRNOT00000087512 3 1 1 80 7 114928204 114930936 TTTCCAGGAATAGGAAGGTAGG 59 114928145 114928166 AGATCATTTCCATCTAGCTCCT 59 Novel Rattus norvegicus 81 AABR07058412.2 ENSRNOG00000059713 ENSRNOT00000086159 2 1 1 62 7 115114859 115114877 CTCAGAGTGGGAAACAGCT 59 115114387 115114405 AGATATCTTGGAGGGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC095267.1 ENSRNOG00000051809 ENSRNOT00000077229 3 1 1 92 X 156225837 156225856 CTTCATGAGAGTGTGCACAC 59 156221238 156225782 GACCGACCTGACCTTTCTC 60 Novel Rattus norvegicus 81 AABR07070331.1 ENSRNOG00000054108 ENSRNOT00000086237 2 1 1 62 8 65990396 65990415 TTAGCAAGATTCTCCAGGGC 60 65990440 65990831 CAAGGTGTGAATCCACCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07044414.1 ENSRNOG00000059927 ENSRNOT00000081316 2 1 1 100 20 5214634 5214652 GGATCTCAGTCCTGAGGAG 58 5214264 5214572 TGTGGTACATGTTGACAACTC 59 Novel Rattus norvegicus 81 AABR07070486.1 ENSRNOG00000061552 ENSRNOT00000081548 1 1 1 80 8 72285276 72290378 ACAACTGCGAGGTAAACTG 58 72290422 72290440 GTCTGCGTCTCTTTAGTGC 59 Novel Rattus norvegicus 81 AABR07070505.3 ENSRNOG00000058432 ENSRNOT00000090432 3 1 1 80 8 72734664 72734682 TCACAAACCAGACAGACCT 59 72734723 72736387 CAGTTAATTCACTTCTGTGCTG 58 Novel Rattus norvegicus 81 AABR07028137.1 ENSRNOG00000056440 ENSRNOT00000077647 1 1 1 93 17 57731433 57731454 GCAAAGAAGGCAGATTAGTCAG 60 57730985 57731379 ATGATCTTCAGCCCTGGAG 59 Novel Rattus norvegicus 81 AABR07044492.1 ENSRNOG00000053996 ENSRNOT00000083619 3 1 1 91 20 8137874 8137893 TGAGTGAAGGGTTTGAATGC 59 8132479 8137820 GACTCCTTTGTAACCGTCG 58 Novel Rattus norvegicus 81 AABR07044569.1 ENSRNOG00000053658 ENSRNOT00000091555 3 1 1 82 20 10681523 10683509 CCAAATAAACCGAGGAAGCC 59 10681460 10681478 CGATTCTCCAAAGGCAAGG 59 Novel Rattus norvegicus 81 AC097312.1 ENSRNOG00000056114 ENSRNOT00000087367 1 1 1 86 4 7448427 7448445 ATTCCAGGGTCTACAGCAG 59 7448495 7449208 CATGATGCCCTTGTCTTGC 60 Novel Rattus norvegicus 81 AABR07044570.1 ENSRNOG00000051612 ENSRNOT00000083597 2 1 1 84 20 10728056 10728163 AGTGGAGACAAGGTGATGC 60 10728208 10728229 GTGTTAATGAAGGTGATCACCA 59 Novel Rattus norvegicus 81 AABR07070704.1 ENSRNOG00000058223 ENSRNOT00000088217 1 1 1 93 8 80923440 80923458 GAACTCAAGCATCAGCTGG 59 80923514 80924895 ACTCTGTTCCTTTCATGGCT 59 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000088340 2 1 2 111 4 16828077 16828098 AGTTTGAAAGAACTCTTGTGGG 59 16828164 16829618 CTCCATCTACAGTGTTATTGTAAGG 59 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000082294 2 1 2 80 4 16827534 16827553 CTTTGAGCCTTCACTGTCTG 59 16827596 16828000 ATATGTGGTACAGCTGCCA 59 Novel Rattus norvegicus 81 AABR07059632.2 ENSRNOG00000052413 ENSRNOT00000078043 3 1 1 80 4 28271837 28272490 AACTTCTGTTGCAACCTGC 59 28271775 28271793 GCTCTCCTGCTTCAATGTG 59 Novel Rattus norvegicus 81 AABR07044799.1 ENSRNOG00000051810 ENSRNOT00000090124 2 1 1 81 20 20982172 20982194 CAGGATAATCAACCAATCTGTCC 59 20980930 20982131 AATAGGCTCCTTCGTTCCC 59 Novel Rattus norvegicus 81 AABR07059807.1 ENSRNOG00000054988 ENSRNOT00000078563 1 1 1 80 4 36726758 36726779 TATCACCTCTTCACGTCTTCTG 60 36726817 36728958 CAAAGGAATTCACTGGTCTTGG 60 Novel Rattus norvegicus 81 AABR07072704.1 ENSRNOG00000055170 ENSRNOT00000087761 2 1 1 88 2 44989160 44990833 CGACTTCTTCAGGTTGTGC 59 44990885 44990903 TATAGCCGCCTTACCATCC 59 Novel Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 2 1 1 63 17 86211392 86214344 GAAAGAGTGTTTGAAGGTCTTCC 60 86211351 86211370 GGATTTGTGGATCTGCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059974.1 ENSRNOG00000057555 ENSRNOT00000078551 3 1 1 84 4 47296262 47330980 CATATCAGGTGAAATTGCTGTC 58 47331022 47331043 TGATACTTGCTCTAAACGATGG 58 Novel Rattus norvegicus 81 AABR07071294.1 ENSRNOG00000057020 ENSRNOT00000080250 1 1 1 80 8 108080874 108084660 AGCATGCACAGAAATGCAC 60 108080812 108080833 GAGTCAGTAGCTACTTCCTTCC 60 Novel Rattus norvegicus 81 AABR07008287.2 ENSRNOG00000061261 ENSRNOT00000083266 3 1 1 80 2 51571966 51582152 GACTTGGTTACAGAAGTCCTC 58 51571906 51571926 CACTCTGACAGGAAGTATGAG 58 Novel Rattus norvegicus 81 AABR07060055.1 ENSRNOG00000055651 ENSRNOT00000078470 3 1 1 84 4 51738018 51738036 AATGTGGTCGTGGATACGT 59 51738082 51739320 AAAGTCTGTCACCTTCTTGTC 58 Novel Rattus norvegicus 81 AABR07045086.1 ENSRNOG00000057977 ENSRNOT00000078257 2 1 1 60 20 33744716 33744737 CATTAACTGTTCCTGTCATCCT 58 33744758 33771992 CAGAATGGACCTATGGGTG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07060318.1 ENSRNOG00000058306 ENSRNOT00000086478 2 1 1 71 4 67100564 67100582 AACTGGTTTGGGAAAGCTG 59 67103094 67103113 AATATTGCCCACTGAAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081572 1 1 3 80 2 59870137 59870158 TTGAGGTTTACAGGTTCATGGA 60 59870194 59872586 CTTCGGTCAATTTCTGTATACTGG 60 Novel Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 2 2 2 128 20 45683292 45684506 CTCCCACGTATCCAGATACG 60 45684597 45684615 CTTACCCAGACACCAGGTG 60 Novel Rattus norvegicus 81 AC111287.1 ENSRNOG00000059841 ENSRNOT00000082305 1 1 1 90 19 43187912 43188067 GATAAAGTACCAGACGGAGGA 59 43188119 43188137 CTCCAGACTCTCCAACAGG 59 Novel Rattus norvegicus 81 AABR07071589.1 ENSRNOG00000057234 ENSRNOT00000084169 3 1 1 130 8 123391339 123391359 GACCTAAGTTTGATCTCTGGG 58 123391448 123393398 TGCATGATCTTATGTATCCGTG 59 Novel Rattus norvegicus 81 AABR07043877.1 ENSRNOG00000053551 ENSRNOT00000091533 3 1 1 60 19 45503970 45503988 AGACCACTGAAGGATCTCC 58 45507264 45507284 CCATCAATAACCGTGTGATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC096792.2 ENSRNOG00000055230 ENSRNOT00000079155 1 1 1 80 7 133241880 133252490 GTTCACCCAAGGTCTACCA 59 133252530 133252552 CTGATCTTCGTAGTAGCTTTCTG 59 Novel Rattus norvegicus 81 AABR07044063.2 ENSRNOG00000056401 ENSRNOT00000081448 1 1 1 81 19 54532219 54532237 AGAAAGAGCAGTAGCAACG 58 54531292 54532176 TGTTGTTTGAAGGTACCTGTC 59 Novel Rattus norvegicus 81 AABR07044075.1 ENSRNOG00000054967 ENSRNOT00000085215 3 1 1 101 19 56367187 56368457 TTAACTGACAGGCTTGCTG 58 56368519 56368540 AGTAGCTGGATGATACTCAGAG 59 Novel Rattus norvegicus 81 AABR07058785.1 ENSRNOG00000056121 ENSRNOT00000083547 3 1 1 60 7 137383819 137383838 CTTTAACAACGCCAGAATCC 58 137376034 137376052 TGTTCTCACCAACATCCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071821.1 ENSRNOG00000053879 ENSRNOT00000088147 1 1 1 83 8 133018972 133018990 ATCATCCTGCCAGAGATGC 60 133007858 133018925 AATCTGGTACCTCACAGGC 59 Novel Rattus norvegicus 81 AABR07009247.1 ENSRNOG00000051687 ENSRNOT00000080050 2 1 1 80 2 90232839 90237566 GTCCTACAGAGAAATATGAAGGC 59 90232781 90232802 ATTTCTTTGCAGGTCGTAATGG 60 Novel Rattus norvegicus 81 AABR07058955.1 ENSRNOG00000053626 ENSRNOT00000087494 2 1 1 80 7 145370580 145371383 GACTTGAAGGAGTTCCTGTC 58 145371426 145371444 GTCACAGACCTGTCTTCTC 57 Novel Rattus norvegicus 81 AABR07009426.1 ENSRNOG00000052217 ENSRNOT00000078602 1 1 1 85 2 97249673 97263543 GGAAGTTCAGGTGTTCACAC 59 97249607 97249625 TATATCCGCCCTTCTGCAG 59 Novel Rattus norvegicus 81 AABR07009599.2 ENSRNOG00000059333 ENSRNOT00000083809 1 1 1 83 2 105283114 105283132 AGTGGACTCTGATTCCCAG 58 105282136 105282154 CACTTAGCTCTTGCATGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010358.1 ENSRNOG00000059009 ENSRNOT00000084228 2 1 1 80 2 133108814 133112209 GAAGAATTTCCTACAGGTTCAGAG 59 133112246 133112266 TCGTAGTCGATTTGGAGACAG 60 Novel Rattus norvegicus 81 AABR07010710.1 ENSRNOG00000060053 ENSRNOT00000084544 2 1 1 60 2 148568155 148568858 GATTTACTGCCTCAAATGATGC 59 148568116 148568135 CTCTTGTCATGAAACTCCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07010760.1 ENSRNOG00000061744 ENSRNOT00000088897 2 1 1 60 2 150464494 150464516 CCGGAGAATGAAGATACATACAC 59 150477331 150477351 TAGAATGCTCTTCAGTCTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011088.1 ENSRNOG00000054942 ENSRNOT00000083257 1 1 1 80 2 157634334 157635732 TTCACGCACATGTAAAGAGTC 59 157635773 157635792 CAGGAGCTATCATCACAGGG 60 Novel Rattus norvegicus 81 AABR07011908.1 ENSRNOG00000057062 ENSRNOT00000083621 3 1 1 81 2 175661879 175661898 ACTGTGTCCAGATAGCAGAG 59 175661259 175661835 GAGTTCCAGACTGCTTCCA 59 Novel Rattus norvegicus 81 AABR07012023.1 ENSRNOG00000057849 ENSRNOT00000087041 3 1 1 91 2 182713265 182717132 TTCTGCGTGGTAGTAGGTG 59 182713192 182713210 TTGTCATCCAGTGATGGGT 59 Novel Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 1 1 1 61 2 183343854 183343974 GAGCTGAGGAGTTTGTGGA 59 183343811 183343829 TGAATGGGTCAGTACCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012475.2 ENSRNOG00000052421 ENSRNOT00000079148 1 1 1 277 2 196587248 196587266 AAGCTCCATATTGCTTCCG 58 196588349 196588367 AGCAATCTCTGCAGAGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012702.1 ENSRNOG00000055403 ENSRNOT00000089188 1 1 1 80 2 202664291 202665804 AAGGATGCTAGGTCTGCTC 59 202664229 202664248 TTCTTCTCTGGGACATTCCT 58 Novel Rattus norvegicus 81 AABR07012702.1 ENSRNOG00000055403 ENSRNOT00000089188 2 1 1 80 2 202664293 202665808 CTTTAAGGATGCTAGGTCTGC 59 202664233 202664251 TCTCTGGGACATTCCTTGG 59 Novel Rattus norvegicus 81 AC129695.1 ENSRNOG00000053644 ENSRNOT00000083507 2 1 1 140 14 6875513 6877509 CTATATGCCAGACTGCTGC 58 6875391 6875409 CAGAGATGCACTACATGCT 57 Novel Rattus norvegicus 81 AC131411.3 ENSRNOG00000060007 ENSRNOT00000083098 2 1 1 75 14 11367993 11368848 CTATCCAAGTGAACATGTTTCC 58 11367939 11367958 GCATAGCAAGGTCTCATCTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 2 1 1 65 2 222721588 222783265 AAAGGTTGTCACCCTCACC 60 222783294 222783312 GAGCAGAAGTCTCCAATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013157.1 ENSRNOG00000051962 ENSRNOT00000080771 1 1 1 80 2 225171038 225171659 TTGTCATCAGTTCTCTTCCTG 58 225170978 225170997 CAGACCTGATTGATGATGGG 58 Novel Rattus norvegicus 81 AABR07013249.1 ENSRNOG00000061460 ENSRNOT00000080106 2 1 1 81 2 230384542 230384563 TCAAAGGTACCATTGTCAACTG 59 230377976 230384500 TCATGGTCCATCTGGATGG 59 Novel Rattus norvegicus 81 AABR07013410.2 ENSRNOG00000055227 ENSRNOT00000084227 1 1 1 80 2 236005032 236005658 GGAAAGTAGAAGGGCAGGG 60 236005702 236005720 CTCCATCCTCGTCTCATCC 59 Novel Rattus norvegicus 81 AABR07013410.3 ENSRNOG00000059757 ENSRNOT00000085253 2 1 1 96 2 236047248 236051843 AGAAAGACCCAAAGAGACGG 60 236047171 236047189 GAAAGCAGATGCGGTTCAG 60 Novel Rattus norvegicus 81 AABR07013435.1 ENSRNOG00000059205 ENSRNOT00000084783 2 1 1 83 2 237343406 237343424 AATGGAAGCATCCAGAGGA 58 237339696 237343362 AGTCAAGATCTGACTCATTTCC 58 Novel Rattus norvegicus 81 AABR07013439.1 ENSRNOG00000061584 ENSRNOT00000077548 1 1 1 60 2 237482500 237482521 AGTTGGATGTTTACTACCTGTG 58 237482541 237482560 AAAGAAGGTCAAGTGCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013639.1 ENSRNOG00000055914 ENSRNOT00000089942 2 1 1 80 2 248079625 248081859 TCAAGTAAGGTAATAAGACCCG 57 248081899 248081918 TTACGTCAGCATCACATAGC 58 Novel Rattus norvegicus 81 AABR07013750.1 ENSRNOG00000052596 ENSRNOT00000091976 1 1 1 87 2 254549728 254549748 AATTCCTCTAATGAGGCACAC 58 254549797 254551320 CAACTTGACCAGGTTCAGC 59 Novel Rattus norvegicus 81 AABR07013841.1 ENSRNOG00000059248 ENSRNOT00000078408 3 1 1 80 2 258783427 258783725 AATGCTGACAAGGTCATCC 58 258783769 258783787 GATGAAGTCAGAGCAGACG 58 Novel Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 1 1 1 80 15 44329500 44329518 AAAGGCCACAAGGTAACGA 60 44329579 44329597 GAACTTGGTGTGCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 3 1 1 60 X 46934423 46934442 TGTGATGACTCATCAGAGCT 59 46934381 46934400 CAGCAGGATACACAGTACTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051505 ENSRNOT00000087515 3 1 1 60 4 53467631 53467650 CTGTGTCTCTTGTGCATCAG 59 53467590 53467612 ATACTGGGCATAGATGTATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059065 ENSRNOT00000091846 1 1 1 60 12 7026876 7026895 GAGCTGACTCTTGCAATTCC 59 7026917 7026936 CCATGACCACAGATTATGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059065 ENSRNOT00000091846 3 1 1 60 12 7026871 7026889 CAGAAGAGCTGACTCTTGC 58 7026911 7026931 ACCACAGATTATGCGGTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970 2 1 4 80 19 17395976 17395996 CAGCCTCTTTATGAAGAAGCA 58 17389701 17395936 TTTGGATCGACCAATTCTCTG 59 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000078786 1 1 4 80 19 17401042 17401268 TAACAGATACACAACCATCCGA 59 17400978 17400996 GCAACAGCCTTTCTCATCC 59 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000078786 3 1 4 80 19 17401043 17402011 ATAACAGATACACAACCATCCG 58 17400979 17400997 CAACAGCCTTTCTCATCCG 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000074856 1 1 5 80 6 114783593 114791354 CACCAAATAAAGATAGTACCCGAG 59 114783536 114783555 TGAAATCCTCTAGCAGGCTC 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000074856 2 1 5 80 6 114783590 114791351 CAAATAAAGATAGTACCCGAGTGG 59 114783533 114783553 CTTTGAAATCCTCTAGCAGGC 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 3 2 2 80 7 116558115 116559923 TTGTTGTGAGCTCTGTAAGAG 58 116558055 116558074 TCTCAGCAGTTTGAGAACTC 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000052568 ENSRNOT00000087299 2 1 1 60 1 251102196 251102214 AGTTGGAATAGGAGCTTGC 58 251102238 251102256 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564 3 1 2 82 4 29534763 29536007 CTTACTGGGAACTTTGCTGC 60 29538803 29538821 CCTCTGGGTCCCATTAAGC 60 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000072059 3 1 4 83 5 171669377 171669400 AAGGAGTCTATGAAGATGAAGAGG 60 171667121 171669335 ATCATTGCGTATGCCTTCG 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 1 2 4 82 5 171667126 171668412 TAAGAACCAGGCATACGCA 59 171667062 171667080 AAGCATCCAGTGAGCTCTG 60 Novel Rattus norvegicus 81 AABR07022134.1 ENSRNOG00000053694 ENSRNOT00000085932 2 1 1 119 13 109490652 109490670 GGAGTGAAGAAGCCCTACC 60 109490464 109490569 CACTCGCTTCTGAAACAGC 60 Novel Rattus norvegicus 81 AC123253.2 ENSRNOG00000052774 ENSRNOT00000090011 2 1 1 80 12 7741184 7741207 GAGATTTCACCTCACATGCG 59 7741123 7741142 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07016556.1 ENSRNOG00000036373 ENSRNOT00000054492 3 1 1 64 14 103358312 103358333 TAAGTAGCTGAATCAGAGTGCT 59 103358269 103358287 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061448.1 ENSRNOG00000054289 ENSRNOT00000079490 3 1 1 60 4 125326458 125326479 GCTCAACTACACAATGTAAGGT 59 125326418 125326436 GTGACGAAGGACTCTTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003935.1 ENSRNOG00000046092 ENSRNOT00000073893 2 1 1 60 1 121210584 121210603 TGCTGGTTATATTCCAGGAC 57 121210543 121210563 TATTTAACAGTCGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006081.1 ENSRNOG00000016597 ENSRNOT00000022226 3 1 1 60 1 218972766 218972786 TGGTGGAATCATATCGACGAG 60 218972726 218972747 TTGACTTTCTGGACTCAAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060127 ENSRNOT00000087258 1 1 1 60 2 228776234 228776255 GATCATGTCTCACGTCTATCAC 59 228776274 228776294 AGACATAGCCTTTCTCCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139391.1 ENSRNOG00000045604 ENSRNOT00000072004 1 1 1 82 18 73563742 73563760 ATAACGTAAAGGGCCAGGT 59 73563676 73563694 CCATGCAAATGCTCGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018272.1 ENSRNOG00000060272 ENSRNOT00000090328 3 1 1 62 15 49773123 49773141 GAGTTGAAGATGCAGAGCC 59 49773079 49773097 TCACTACACGACGGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 1 1 1 61 19 426209 426227 CCTGAGGTTCCTGACAGAG 59 427424 427442 GATTTGGCCTGAAGTGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258 2 1 2 80 13 95986508 95988010 TCAACATCAACGACATGCAG 59 95988050 95988071 CTGTGTAATACCACAAGAAGCA 59 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000090885 3 1 2 80 13 96081277 96081299 AGACGTGGGACATTATGATAGAG 60 96081336 96084633 AACAAGGCCTATAGTTCTGAGG 60 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000075256 3 1 2 120 2 208383458 208383476 CTGACAACAGAGAAGACCG 58 208385093 208392607 AGAATGGACATTTCACCGG 58 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000090367 2 1 2 84 2 257514476 257514494 AGACTGTGGACGAGTTTGG 60 257505621 257514429 GCAAGGATTAGCTCTGTTGC 60 Novel Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079511 1 1 2 80 4 113979352 113979371 TCATGTGGAAGGACACAGAG 60 113979527 113983113 CATCATCTCCATACAGTAGAAACAC 60 Novel Rattus norvegicus 81 AABR07041604.1 ENSRNOG00000038118 ENSRNOT00000058004 3 1 1 60 X 134618194 134618212 AAAGTGCAGATTGTTGCCA 59 134618233 134618254 ACATGTAGACCATGTAGTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034781 ENSRNOT00000052904 3 1 1 60 X 83783958 83783977 CACTGATCTCGTCTGATCTC 57 83783999 83784018 CCCATCCAAGTACTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021688.1 ENSRNOG00000050203 ENSRNOT00000070867 1 1 1 60 13 85549815 85549833 TCTTGTTACAAGCGCATGG 59 85549773 85549794 GTTAGAAATGCAGAATCTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 1 1 1 61 4 155169733 155169753 GGCTAAGAAGAAATCACTGGA 58 155169778 155169796 ATGTCTTACTAGCCGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 1 1 1 61 18 25313905 25313923 ATGGGAGGAATCAAGGTGC 60 25313858 25313876 GAGCCAATGGTATTGGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 3 1 1 60 7 121773744 121773764 AAGATCACTGTCACTTCTGAG 58 121773874 121773892 TTGATCTGGAAGTAGCGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC105631.1 ENSRNOG00000016986 ENSRNOT00000022782 3 1 1 65 1 169279849 169279867 TTCAATGCCTGCTTGACTC 59 169279801 169279819 CAGGATGCCAGACTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 1 1 1 64 7 13055289 13055307 CAGATCTGCTCCCTTCCTG 60 13055337 13055355 CAGGGTAGTGCTTCCAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 2 1 1 66 1 136075098 136075116 TCACCTAGACTTGGTGTGG 59 136075144 136075165 AGTAATTTAGGCAGAAGGTACC 58 Novel DesignNoJunction Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 3 1 1 71 20 47733552 47733570 CATCCAATGACACCAGCTG 59 47733499 47733517 GGGAAGCTGTGTTATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280 2 1 2 80 14 32897004 32897169 CACAATCAACTACAATCGCTG 58 32896944 32896963 AGTACCGGACTCTTCTTCAG 59 Novel Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 2 1 1 101 10 78686126 78686145 TTCAGTGCCTCAGGATTGAG 60 78687057 78687075 GACAACGACGATGTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 2 1 1 80 10 102746179 102746201 GCACTACTCTTCAACTGAATACC 59 102746347 102746365 CTCCTGGAACATCTGGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 1 1 1 110 15 40480802 40480823 CATAAGAGATGCATACTTCCCT 58 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 3 1 1 111 15 40480801 40480822 CCATAAGAGATGCATACTTCCC 59 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 1 1 1 60 6 39679940 39679960 TAGAAGAGCTGTGCATATTGG 58 39692696 39692715 AGATTTCCTTCAGAATGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 1 1 1 89 15 97420705 97420726 CTAGAAACAATGGCTTTCTCAG 58 97421813 97421831 TACTTACTGGCTTGCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 3 1 1 110 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14434670 14434689 GACCAGGTCTTAGCAGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 1 1 1 73 1 97089813 97089834 TCAATAAGGGATCACAAGACTG 58 97084669 97084687 AAGTTTCGAGCCTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000086587 3 1 2 92 6 119134309 119137133 TATGTCAAGGCTGTCGGAG 59 119137189 119137207 ATTGGAGTGAGGGAAAGGC 60 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 3 2 2 63 1 131386634 131386656 CCCGTAGAATACTGTATAGTGAC 58 131385492 131385510 GGAAGAAGCCTCCATCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 2 2 3 80 12 3308128 3308147 ACTCTTCTGGCAAATCACCT 59 3308188 3319650 GTCCTCTTGATGCATTATCGC 60 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 2 1 1 60 12 22339029 22339047 GGTAAAGGTGTCTTCACCC 58 22339407 22339427 AGTTCTGGGTACAGCTATTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 2 1 1 79 16 19807200 19807219 AACCAGGTCTTACAGAAACG 58 19807026 19807044 AAGATACTGTGGAGGAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 1 1 1 60 9 26953158 26953178 AGTGGATCCAACTTTCTGGAG 60 26952789 26952810 CTAAAGTCGATCACATTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 2 1 1 60 12 33687316 33687337 TTCTAAATTCAAGGCACACCAG 59 33686607 33686627 TCAGGTGATCAATCACTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 2 1 1 61 12 46494629 46494649 CAGCAAGATCGTGAAGATCTC 59 46495851 46495869 CCTACCGATGCTCTAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 1 1 1 61 X 28942389 28942413 CCATTAGGTCTTTACTAATAGCCTG 59 28943222 28943240 AGCCTTCTCTGAAATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 1 1 1 95 16 86537919 86537937 AGCAAAGGTAGGAGGTGTC 59 86538816 86538834 GAGTCAGCTTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 3 1 1 98 16 86537916 86537934 CTGAGCAAAGGTAGGAGGT 59 86538816 86538834 GAGTCAGCTTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 2 1 1 81 7 23251349 23251367 TAAAGCCACACCTCAAGGG 60 23198286 23198309 GGTGAATATAGGTAGTCAATCGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 2 1 1 113 1 251400935 251400954 ATGTAGTCACTGCTGAAGCA 60 251387930 251387948 AACCTGTAGGTTGTGGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059 1 1 3 92 8 5169116 5171866 CAGAGTCATTTGCAGGCTG 59 5169042 5169060 CAGGATACTCTGCTCTCCG 59 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 2 1 2 60 19 11671467 11671485 ACAAGACTGCGTTTGATGG 59 11686699 11686717 CTAGCCCTTGAGAGTCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000078748 2 1 3 80 8 23492891 23492909 TTGTGTTACTGCTTGGCAG 59 23492950 23509004 ATTTCCTTTCAACCTCTTGGTC 59 Novel Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 2 1 1 61 17 37332684 37332702 CTGCAGAAGTTGGACTCAG 58 37337151 37337169 CTCAGTGGAAGACTTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 3 1 1 61 17 37332668 37332686 CATTCCCATGCACTAGCTG 59 37337133 37337153 GGTGGACTGACTGTAGTAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 3 1 1 79 1 278524945 278524963 ATCCTGACCATTCACACGT 59 278522691 278522710 ATTCTGTCCATAGGCTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 2 1 1 60 8 40036722 40036744 CACTGAGAAGCAAAGATATGGAC 60 40034209 40034230 CTTAGCATATGCGTTGATTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 2 1 1 63 8 48379630 48379648 CAAGTCAGACGCTGAAAGC 60 48308931 48308949 TCTGCAGACGTCTTCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 3 1 1 60 7 83991190 83991209 ACCTGAAAGTTCTGAATGCA 58 83989706 83989725 TCCTCCATGTCTGGAAACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 2 1 1 60 X 129482637 129482656 CATGAACGGAAGTCTGATGG 59 129481106 129481128 CCATATCACAACAAACAGGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 2 1 1 63 10 30555462 30555483 GAATTTAATCTGCAACTGCCAG 59 30546838 30546859 TGCAATGGTACAGTGTAATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 1 1 1 60 2 32636213 32636233 GCTGGAAGCAGAATTATCTGG 59 32633000 32633019 TGAAACATAGCCGTAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 2 1 1 90 4 17666211 17666230 AAGGATTCAGAGTGAGTCCC 59 17668584 17668602 GAACTCCAGGCTCCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 2 1 1 61 20 18258561 18258580 TCCAAGGAGATTTCTCAACC 57 18248164 18248185 CGTTTACGAACTAAATGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 1 2 2 80 4 68424643 68424664 TGAGATTAAAGAACTCCACAGC 59 68424703 68425215 TCATTCATGTCAATCCACAGG 58 Novel Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 1 1 1 62 2 69809757 69809777 CCCAAATCTTCACTGAAACAG 58 69803549 69803567 TTTCTGTGCCTTCATCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 3 1 1 78 2 82771679 82771700 GGTAATTGTTGTGACACATGAG 58 82772711 82772731 TGAATTCTTACACTGGAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 2 1 1 61 7 138150657 138150675 CAGCGATGTCTCAACTCTC 58 138150111 138150129 CACATCCAGCAGAGTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009154.1 ENSRNOG00000056034 ENSRNOT00000082078 1 1 1 64 2 87734906 87734924 AATCAGCCCTAAGCTCACC 60 87785160 87785178 AAACACTCCAATGAGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 1 1 1 60 2 154909937 154909957 CCTATGGGAAATGCTGTTGTC 59 154911327 154911346 AGAAGTACCACCAAATGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 1 1 1 60 2 183343970 183343988 CTGTAAAGCAGGGAGAGCT 59 183343826 183343845 CCAGCCCAGGTATAACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 3 1 1 64 14 3792321 3792340 CATTAACACTTGAGCAACGG 58 3792966 3792985 CTCCGCAACATATAAGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 2 1 1 129 2 233542061 233542079 CAGCTTATCTGCATGTGCG 60 233538790 233538808 GTAAGCTGTGCTTCGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AY172581.24 ENSRNOG00000043866 ENSRNOT00000069133 2 1 1 60 MT 2477 2499 CGATTAAAGTCCTACGTGATCTG 59 2517 2537 ATAGATAGAAACCGACCTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy1a3 ENSRNOG00000012302 ENSRNOT00000017190 2 1 1 80 2 181051008 181051028 GGCTAACAAATTTGAGTCCTG 58 181048142 181050968 GGACAGTCTTTGAGTAACCTG 58 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813,ENSRNOT00000077883 3 2 2 80 2 212547367 212547387 GACGAAACTTAGCTTCAGGAG 59 212547426 212552007 CTACTGGTTTAGGTACACATGG 58 NA Rattus norvegicus 81 Hist2h2ab ENSRNOG00000048317 ENSRNOT00000048582 3 1 1 60 2 198360039 198360059 AAGTTACTAGGAGGAGTCACC 58 198360081 198360099 AGACAGCCTGGATATTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim11 ENSRNOG00000039877 ENSRNOT00000061235 2 1 1 116 11 32454834 32458493 TGAACTGGAAGGTTCTCGA 58 32458573 32458591 CTTCCAAGCTTCTCCTCTG 58 NA Rattus norvegicus 81 LOC682408 ENSRNOG00000050215 ENSRNOT00000071981 2 1 1 119 20 3706725 3706743 GAAAGACTGGCTCCAACAG 59 3706597 3706616 CTGAAGAACTTCCCTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330,ENSRNOT00000091593 3 2 2 83 8 108788462 108790615 AGTCTTCGCCAAATGATTTCTC 59 108788400 108788419 AGACAGTCTCTTTCAGCTGG 60 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 1 2 2 80 8 117282477 117282496 GCAAACCAGGAAAGTAAGGA 58 117282767 117282929 GAGCAACAGTTCATCTTTGG 57 NA Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000059660 3 1 2 80 15 36470546 36470693 GCTGTTAAAGCTGAAGAGTAAGG 60 36470488 36470506 TTCACTTTGACGTTGCGTC 59 NA Rattus norvegicus 81 Olr1126 ENSRNOG00000030845 ENSRNOT00000044295 3 1 1 60 8 18910664 18910683 ATTCCCATCTCCATACTCCC 58 18910623 18910643 CAGATATCAGTCAAGGAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifnar2 ENSRNOG00000045668 ENSRNOT00000072856 1 1 1 80 11 31543886 31546942 CCACAAATGTTCTTCTAGAGCC 59 31546982 31547001 GTGGAAACTCCATCATCACG 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 1 3 3 80 2 219078459 219078479 AGTTACACAGCAGTCAAATGG 59 219077398 219078417 CTTTCGGAGCAACGTTGAC 60 NA Rattus norvegicus 81 Mpl ENSRNOG00000028377 ENSRNOT00000034762 1 1 1 80 5 137281268 137281286 GCCCTCTTTATGGTCACCT 59 137281060 137281227 CAGCAAGAAGACATCTTGACTG 60 NA Rattus norvegicus 81 Ing1 ENSRNOG00000014520 ENSRNOT00000019454 2 1 1 60 16 83277966 83277984 ATCGTGAGTCAGATGGTGG 59 83277924 83277942 CTACATGACTGTCCACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbrg1 ENSRNOG00000023850 ENSRNOT00000039729 1 1 1 80 8 40122266 40122287 AAGAACCAGAATGAGAAGTACC 58 40120254 40122225 AGCAGCATTCTCAAACACC 59 NA Rattus norvegicus 81 Faim ENSRNOG00000030069 ENSRNOT00000047613 1 1 1 80 8 106816378 106817358 TTTGAAGATGATGAAAGCCCTC 59 106817398 106817417 GTCACTTAATGCTACGTCCC 59 NA Rattus norvegicus 81 Ankra2 ENSRNOG00000048118 ENSRNOT00000073183 3 1 1 80 2 28380170 28380190 CAATTGAAACAGACTCTGGCT 59 28380230 28380757 ACTCAATGACCTGTTGAACAC 59 NA Rattus norvegicus 81 Scara3 ENSRNOG00000016177 ENSRNOT00000022020 1 1 1 84 15 42616903 42618117 ATCTTCAAGGACTGGACCC 59 42616837 42616855 AGCTTCCTGATCTCTTGCC 60 NA Rattus norvegicus 81 Mir3583 ENSRNOG00000049006 ENSRNOT00000074381 2 1 1 60 5 150732605 150732626 CACTAATGGTGAGCATGAAGAG 59 150732647 150732665 GAAGTCAGGTTCATCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa8 ENSRNOG00000032585 ENSRNOT00000041306 1 1 1 60 5 99031560 99031579 CATCCTCAATGTTTCTGCTG 57 99031519 99031539 GGTGATGGTGATCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464,ENSRNOT00000091513 3 3 3 80 16 2125577 2125598 CACTTTCCAACTTAGATGTCAG 57 2124967 2125538 AACTTCTCTAGTTCACCTTGC 58 NA Rattus norvegicus 81 Srpk1 ENSRNOG00000000511 ENSRNOT00000000612 2 1 1 80 20 5850264 5850285 GATCCAAATGGAGAAATGGTCG 60 5844531 5850225 CACCATGCAGATATGTGTTCC 60 NA Rattus norvegicus 81 Olr1543 ENSRNOG00000050294 ENSRNOT00000051112 3 1 1 60 11 43394972 43394990 TACGACCGCTATGTAACCA 58 43395014 43395032 CTCTGTTGGACATCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem202 ENSRNOG00000026112 ENSRNOT00000030199 2 1 1 80 8 64301229 64304768 ATACTCAAGCCACCCTATTATCTC 60 64301172 64301191 GCCAAGACCAATAAGCTCAC 59 NA Rattus norvegicus 81 Pbxip1 ENSRNOG00000020673 ENSRNOT00000028057 1 1 1 81 2 188775098 188775121 GATGATGAAGTGGATGACTTTGAG 60 188775158 188775584 TCTTCTTTGACCTCCTCTTCAG 60 NA Rattus norvegicus 81 Hlcs ENSRNOG00000001686 ENSRNOT00000002291 1 1 1 80 11 34367240 34367261 CATTTGTCCAGCATTTGATGTC 59 34363066 34367205 CTCGTAAGTTGATATCCTCATACTC 59 NA Rattus norvegicus 81 Fam163b ENSRNOG00000006591 ENSRNOT00000008660 2 1 1 81 3 5658589 5661549 TACTGTCGACTCCAGTATTACTG 59 5658530 5658548 GAGAATGCACAGCGAAGTC 59 NA Rattus norvegicus 81 Mcpt1l4 ENSRNOG00000031304 ENSRNOT00000045948 2 1 1 80 15 34928497 34928917 GGAAGGATGAGATCAGGAGAC 60 34928956 34928977 TCGTCCATGAGATACAATACCA 59 NA Rattus norvegicus 81 Polr3g ENSRNOG00000016260 ENSRNOT00000021804 2 1 1 80 2 9566007 9566025 TCGAAGCTGTTGGATTCAG 58 9560952 9565966 AATCTGTATCAGGAAATAGCGG 58 NA Rattus norvegicus 81 Polr3g ENSRNOG00000016260 ENSRNOT00000021804 3 1 1 80 2 9566005 9566023 GAAGCTGTTGGATTCAGCA 59 9560950 9565966 GTAATCTGTATCAGGAAATAGCGG 59 NA Rattus norvegicus 81 Kbtbd11 ENSRNOG00000012333 ENSRNOT00000016420 1 1 1 67 16 79698553 79698573 TGGATGGTACCATCTACTGTG 59 79698506 79698524 CTCAGTGTCCTGAGAAGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc4l ENSRNOG00000029749 ENSRNOT00000017012 2 1 1 64 2 130658109 130658128 TAAACAGTGTTAGCCAGCGA 60 130657531 130658082 ATGTGTCTTCCAGGTTCCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 1 2 2 80 8 132730832 132730850 TATCTACTTGGTCCGTGGC 59 132729896 132730788 AGCTGCTCCATCTTAGGTG 59 NA Rattus norvegicus 81 Rab32 ENSRNOG00000014258 ENSRNOT00000019121 3 1 1 82 1 4644506 4644524 TCCTTCCCAGATGAACCAG 59 4640051 4644463 CGATGTTTATGTTATCCTTGGC 58 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351,ENSRNOT00000070912 3 2 2 80 3 109871294 109871496 AGGACTCTGATGGTGATGG 59 109871539 109871558 AGATGTCATCAATGTCTGGC 58 NA Rattus norvegicus 81 LOC100912106 ENSRNOG00000050827 ENSRNOT00000074804 1 1 1 80 1 91962692 91963353 GGCCAGGTTAAGTAACTTAGC 59 91962632 91962652 TACCGTGCCATCTGTATAAGG 60 NA Rattus norvegicus 81 Taar7e ENSRNOG00000046903 ENSRNOT00000046379 2 1 1 60 1 22480348 22480367 AGTCTTTGGCTTTAGTGCTG 59 22480307 22480327 AATTGATGTCATCACCAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhfr ENSRNOG00000013521 ENSRNOT00000018259 3 1 1 80 2 21932413 21934542 CCTCTTCAGTAGAAGGTAAACAG 58 21934581 21934600 AAGGTCGATTCTTCTCAGGA 58 NA Rattus norvegicus 81 Pir ENSRNOG00000003674 ENSRNOT00000004884 3 1 1 80 X 31872040 31892553 CAGCCTATTCCTAAAGGGTG 58 31863313 31863331 TTGTTGAGCATCATCAGGC 59 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 2 2 2 80 5 139890605 139890624 CAAGAAACAGCTCTCCAAGG 59 139889715 139890562 ATGAACATTGCTTGGGCAG 59 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 3 2 2 80 5 139897871 139898785 ATAGACCCAGCTGTTGAAGG 60 139897810 139897830 GACATTGATGTCCAGACTTCG 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007,ENSRNOT00000059868 2 2 2 80 8 47276839 47276859 GTCACAATCTCAGATCCACAC 59 47274914 47276800 CTTCAACAAGCCCAAATTTCTC 59 NA Rattus norvegicus 81 Mogat2 ENSRNOG00000027228 ENSRNOT00000035774 3 1 1 100 1 164186156 164196136 CTGTCTCTTTGGTCAAGACAG 59 164186076 164186094 CAGGTTAAGAAAGGCTCCG 58 NA Rattus norvegicus 81 Olr97 ENSRNOG00000011001 ENSRNOT00000014730 2 1 1 60 1 168501146 168501167 GTGCCAGGATTAGAAGATACTC 58 168501107 168501128 AGAAGTACATGAAGCTGAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 3 2 6 126 1 76558943 76572735 CTCATGAGGAAAGGCACTG 58 76558835 76558855 TTTATTCCCATGGGAACATCC 58 NA Rattus norvegicus 81 Sra1 ENSRNOG00000018089 ENSRNOT00000024671 1 1 1 80 18 29495300 29495322 CTGAGACTCTAATAGAAGACGTG 58 29494646 29495260 ATACCTGCTTCTTCGTGTG 58 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343,ENSRNOT00000086474,ENSRNOT00000080147 2 3 3 80 14 86155362 86157766 GAAGACCTAGACAAGGGCA 59 86155300 86155318 TCCTACGATGTTGTTCCCT 58 NA Rattus norvegicus 81 Islr ENSRNOG00000048924 ENSRNOT00000075476 2 1 1 60 8 62948558 62948577 GTGCCTATCGTGACCTAGAC 60 62948517 62948535 CTCAGTGTGGTCACATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0551.5 ENSRNOG00000038267 ENSRNOT00000029387 1 1 1 60 X 54892905 54892924 TGAAGAGGAAGAGAAAGCCC 60 54892864 54892882 GACTTTGCCTTTAGTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg7 ENSRNOG00000001634 ENSRNOT00000002232 3 1 1 80 11 46821000 46821021 TAATGTAGCAATCCAGTCAGTC 58 46821061 46821192 TCACTAGATCCTTTCTGCAC 57 NA Rattus norvegicus 81 Ak8 ENSRNOG00000012761 ENSRNOT00000017029 2 1 1 80 3 7279514 7282016 TTCGAGATGATGCAGAGCA 59 7282058 7282078 AAGGTGACTGATCATGAAGCT 60 NA Rattus norvegicus 81 Ccp110 ENSRNOG00000027405 ENSRNOT00000037870 1 1 1 80 1 188437177 188437832 CGGCAGATGGATAAGATGAG 58 188437874 188437893 CATGAACTTCTTCCTGTCCA 58 NA Rattus norvegicus 81 Tmco6 ENSRNOG00000017718 ENSRNOT00000038066 1 1 1 80 18 29583275 29583296 CAGTTCTTCCTTCAGAAACAGC 60 29583334 29584580 AGTAGGACTATTTGCAGTGAGG 60 NA Rattus norvegicus 81 Sass6 ENSRNOG00000046153 ENSRNOT00000020757 3 1 1 81 1 69829399 69830788 CCTGAATGTGGTTGATAGTAGAC 59 69829340 69829358 ATTCTGGAATGTGAACGCA 58 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627,ENSRNOT00000005061 3 2 2 80 X 35693563 35699108 GTCTAATAGAAGCCAATCCACC 59 35699146 35699167 CTTAAGTTCTGAATGTCCTTGC 58 NA Rattus norvegicus 81 Samd12 ENSRNOG00000043390 ENSRNOT00000064877 3 1 1 119 7 93193370 93279954 AACATGACATAACTGGGCG 58 93193269 93193287 GAACCTTCAGTTGGAGCAC 59 NA Rattus norvegicus 81 AABR07004678.2 ENSRNOG00000054697 ENSRNOT00000082185 1 1 1 60 1 149769927 149769945 GCCTCCAGCACTTAATCCT 60 149769885 149769906 CAGAGAACACTTGACCTTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004678.2 ENSRNOG00000054697 ENSRNOT00000082185 3 1 1 60 1 149770666 149770687 TGTACCTAGCAGTCATAATGAG 57 149770627 149770648 TTCAGATCCAGAGTGATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5e ENSRNOG00000011071 ENSRNOT00000015057 3 1 1 80 8 96007965 96008776 GATGAGAGGAACAATGGTACC 58 96008817 96008836 TTGGACAAGGTCAAATGTCC 58 NA Rattus norvegicus 81 Bmp3 ENSRNOG00000002381 ENSRNOT00000038872 3 1 1 81 14 12363240 12370206 TGCCAAAGTCTTTGAAGCC 59 12363177 12363195 TCAGGAATCCCAGAGACGA 60 NA Rattus norvegicus 81 Tlr8 ENSRNOG00000045992 ENSRNOT00000073535 2 1 1 60 X 28539262 28539280 AGAACCTTCCAGGGATCTC 58 28559569 28559587 CAGAATCCACGACTGAGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000082017 2 1 3 80 6 2314980 2314999 TACAGACATCTTTGGAGCCA 59 2311887 2314938 ACATCCGGTCTGGTAAAGAG 59 NA Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000084171,ENSRNOT00000082017 1 2 3 60 6 2311612 2311630 CCCAGAGGACTTTGATCCG 60 2311570 2311590 TAGTGCCTTGTTAATGAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 2 2 2 80 6 50935276 50937506 CAAACCAAGGTGATTGCCC 60 50935214 50935233 AGACTATCAGAGCAGCATCG 60 NA Rattus norvegicus 81 LOC100911801 ENSRNOG00000049658 ENSRNOT00000071307 2 1 1 60 8 41358997 41359015 TCTTCAGGTAAGGGTTGGT 58 41359039 41359057 TAGCAGTGATGATGTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a3 ENSRNOG00000036625 ENSRNOT00000028493 3 1 1 80 1 227981224 227982439 TCCTCATCAAATGGCCTGG 60 227981162 227981181 CATGACTGAGAGCGAAATGG 59 NA Rattus norvegicus 81 Insig1 ENSRNOG00000006859 ENSRNOT00000009233 3 1 1 85 4 346048 346066 ATATCCGTTCTTGGCTCCC 59 346113 348902 TGGAACACCCATAGCTAACTG 60 NA Rattus norvegicus 81 C1qtnf9 ENSRNOG00000013793 ENSRNOT00000018533 2 1 1 87 15 41070328 41074315 CAGGGTTAAGTCCAGACCG 60 41074366 41074384 GTCCTGGGAGAATACGCTC 60 NA Rattus norvegicus 81 Rsph3 ENSRNOG00000018762 ENSRNOT00000067916 2 1 1 81 1 47443533 47443552 TTCTCCCGTCTGTCTTTGAC 60 47441265 47443492 AGGAATCCGACCTCAATATCTC 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559,ENSRNOT00000022980 3 3 3 82 17 10603298 10603438 CTGCTCAAGTGTCAGTCAG 58 10603234 10603253 TAACTGGACAACAGGAACTG 58 NA Rattus norvegicus 81 Rpia ENSRNOG00000005576 ENSRNOT00000007927 1 1 1 84 4 98585712 98587264 AGCGAATAGCTGAAAGAGTG 58 98579142 98579160 TGTAGGATAAGCTGCCTGG 59 NA Rattus norvegicus 81 Sptlc1 ENSRNOG00000010882 ENSRNOT00000014546 2 1 1 81 17 11890138 11892287 AGGAGATTGTAGAGCAATGCA 60 11892330 11892348 GGAAGGCACTTCTCTTCCT 59 NA Rattus norvegicus 81 Olr376 ENSRNOG00000013192 ENSRNOT00000017604 3 1 1 60 1 230629848 230629869 TTGAACCCTTTCATCTATAGCC 58 230629890 230629908 TGAGCTTCTTAAAGGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0604.2 ENSRNOG00000060566 ENSRNOT00000042809 3 1 1 60 X 59762118 59762138 GTAAGATACTTCCGAACGTCC 58 59762078 59762100 GCTTCAGACCAAATGATTACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 2 3 3 80 9 94940171 94942939 AAGATGTAGGGAAGAGCTGTG 60 94942979 94942999 TCTTGTCCTCTTCAGCATCTG 60 NA Rattus norvegicus 81 Rn60_7_0058.1 ENSRNOG00000056345 ENSRNOT00000079966 2 1 1 60 7 5624950 5624971 TGAAGATTTCATGCTCAGACAC 59 5624990 5625010 AGCAGTGCACAAATAATCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hus1b ENSRNOG00000055922 ENSRNOT00000086985 3 1 1 60 17 35424663 35424681 TCTCAAGGCAAAGACCCAG 60 35424700 35424723 GTAGAAGTTTCCTATTATCCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl10a ENSRNOG00000000505 ENSRNOT00000000603 2 1 1 80 20 7910474 7910674 AGATGAAGAAGGTGCTGTG 58 7910717 7910736 GGTGGATGTTGTAGACTAGC 58 NA Rattus norvegicus 81 Jrk ENSRNOG00000027238 ENSRNOT00000000199 2 1 1 81 7 115945095 115946410 GTACAGGGTCCACAGTTCC 60 115945032 115945052 TCTGAGCTGGGAATACTTCTC 59 NA InUTR Rattus norvegicus 81 Rn60_X_0595.2 ENSRNOG00000051308 ENSRNOT00000076448 2 1 1 60 X 58804735 58804755 TGGCTTTAGATTCAGGAAAGG 58 58804695 58804714 ACATTCTCAAGAGTCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnrg ENSRNOG00000021831 ENSRNOT00000032514 2 1 1 80 15 41938382 41938400 GACCTTCTCACCATGACCT 59 41938442 41941981 TGGAAATGTACCTGACTCCAG 60 NA Rattus norvegicus 81 Cts8 ENSRNOG00000040000 ENSRNOT00000061486 1 1 1 80 17 3389344 3389362 ACTATAGGGCCCATCTCTG 58 3389403 3396578 TGGCTCATAATAAATGCCTCTC 58 NA Rattus norvegicus 81 Mgp ENSRNOG00000005695 ENSRNOT00000007577 3 1 1 80 4 170858613 170860041 CCTGTGCTATGAATCTCACG 59 170857568 170857589 ATAAAGGTGTTGGCATTTCTCC 59 NA Rattus norvegicus 81 Kcnh5 ENSRNOG00000009542 ENSRNOT00000013275 2 1 1 80 6 98097935 98097955 TGGTTTGTGATTGATCTGCTG 59 98070955 98097893 ACTGCTGATTCCCTCATCC 59 NA Rattus norvegicus 81 AABR07053188.1 ENSRNOG00000031694 ENSRNOT00000041291 2 1 1 60 3 95939358 95939377 TTATGCCCGAGATGAAACTG 58 95939397 95939418 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073,ENSRNOT00000020994 2 2 2 81 1 196958941 196958959 ATCGAACAACTTCCTGCAC 59 196959003 196960357 ATAGACTTTGAATTCCGCCG 59 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000086893 1 1 2 80 18 30956982 30957003 TGTGATCCCGTGTTCTATAGAC 60 30957044 30958879 CCACAGTATGCATGGTGGA 60 NA Rattus norvegicus 81 AABR07064622.1 ENSRNOG00000047877 ENSRNOT00000071999 3 1 1 60 6 87426816 87426834 AACACATGGAAACAACCCT 58 87426774 87426794 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb44 ENSRNOG00000038757 ENSRNOT00000059209 2 1 1 100 15 46236453 46237308 CATTGCCTGAAGGTTACTGTG 60 46237370 46237388 CCAGCCTAGCTTACAACCA 59 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000080413 3 1 2 80 14 84164896 84165591 TCGGTCATAAACATGCTCTG 58 84164835 84164854 AGAAACTGGGCAAAGAAGTG 59 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 2 1 1 61 1 81501862 81501880 CAACGCCAAACTCAACCTC 60 81501905 81502215 CATACGCACTCTCATTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0608.1 ENSRNOG00000051276 ENSRNOT00000076410 1 1 1 60 X 60136046 60136065 AAGCAGTGGAAAGACATAGG 58 60136088 60136106 CCTGGAGCTGTTTGATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0608.1 ENSRNOG00000051276 ENSRNOT00000076410 2 1 1 60 X 60136516 60136535 GCTACAGTTGTTTCACACCT 59 60136555 60136576 ATTCAAATAGAGCAAGCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir764 ENSRNOG00000040427 ENSRNOT00000062180 1 1 1 60 X 118123297 118123317 CATGCCTACACATACATGGAG 59 118123336 118123357 CAACGAAATCAATCATGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 1 2 2 80 4 34255977 34255996 CCTGATGGAGAGTTATGTGG 58 34256038 34259241 ACATCTAAAGGTGAACCCTG 57 NA Rattus norvegicus 81 Meox2 ENSRNOG00000006588 ENSRNOT00000008803 3 1 1 80 6 56678257 56678278 CCCATCATAACTATCTGACCAG 58 56678317 56687837 ACACTTTCACCTGTCTTTCAG 59 NA Rattus norvegicus 81 Pdxk ENSRNOG00000049937 ENSRNOT00000001589 1 1 1 80 20 10944287 10945249 TGCTCACTGGTTACACGAG 60 10945292 10945311 GAGAGTTCTGTTGCTTCAGC 59 NA Rattus norvegicus 81 Rn60_X_0616.1 ENSRNOG00000038235 ENSRNOT00000041226 3 1 1 60 X 60953664 60953684 AATAGCACTAACATCCAGGAG 57 60953706 60953724 GGAACATGGCTGAGAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091,ENSRNOT00000012295 1 2 2 80 8 63419645 63419664 AGCTACTGGACAAAGAATGG 58 63419704 63423857 TGGCTTATTGATCCTGTATTCC 58 NA Rattus norvegicus 81 Rergl ENSRNOG00000008130 ENSRNOT00000010728 2 1 1 80 4 173633363 173634839 ATGACCCATGTTCTCAATCAC 58 173633303 173633323 ACACAATCACAAACCCATCTG 59 NA Rattus norvegicus 81 Dcbld2 ENSRNOG00000055281 ENSRNOT00000084060 2 1 1 80 11 44256657 44256676 TCTTTGGCCAACAATGTCAC 59 44254590 44255535 CCCATAGCAACCACTTGTC 59 NA Rattus norvegicus 81 LOC100361143 ENSRNOG00000059302 ENSRNOT00000072162 1 1 1 60 2 102919439 102919457 GATCAGACAAGGCAAAGCA 59 102919397 102919415 TTTCCTCAAAGCTAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knstrn ENSRNOG00000009334 ENSRNOT00000012454 2 1 1 80 3 110618703 110618721 CCAGTTCTAAGACGGTGTG 58 110618763 110622247 TAGCTCGAGTTTGTGTATCTG 58 NA Rattus norvegicus 81 LOC100362110 ENSRNOG00000030481 ENSRNOT00000046719 3 1 1 82 13 41806008 41806026 TATCCTCCTGTTTCGGCTC 59 41806071 41808328 AGATCCTTCATGAACAGCCA 59 NA Rattus norvegicus 81 Ppidl1 ENSRNOG00000037230 ENSRNOT00000056255 2 1 1 60 9 121457558 121457578 AGAAAGCAGATGTATCCAGAC 58 121457600 121457618 GCACCAATATTCAGCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr2 ENSRNOG00000031331 ENSRNOT00000041605 3 1 1 60 1 116153011 116153031 GAGCCCTTGTTAATTCTAGCC 59 116152971 116152989 AAGAAGGAAGCCACAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calr ENSRNOG00000003029 ENSRNOT00000004091 2 1 1 80 19 25960852 25961065 GAGAAGGATAAAGGGTTGCAG 59 25960792 25960810 CTTGTTGCTGAAGGGTTCG 60 NA Rattus norvegicus 81 Ppp1r42 ENSRNOG00000006804 ENSRNOT00000066395 1 1 1 80 5 8937666 8942737 GTCACTGGAGTTTCTTGATGG 59 8942779 8942797 GCCTCTTTGGATGCTTTCC 59 NA Rattus norvegicus 81 Olr465 ENSRNOG00000058567 ENSRNOT00000084229 1 1 1 60 3 73254804 73254823 TCAGACCAGAAGACCATCTC 59 73254845 73254864 GAGCAATGAAGAGGAGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 2 2 2 80 3 130045422 130048048 TCCCGGAATACAGAACTTCG 60 130048088 130048109 CCAAGTATCATGACCAAATGCA 59 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 3 2 2 81 3 130045375 130045396 CAGCTTATTTCATCAGGAGAGG 59 130045432 130048063 CTCTCAGGAAATATACGAAGTTCTG 59 NA Rattus norvegicus 81 RGD1561206 ENSRNOG00000016331 ENSRNOT00000021855 3 1 1 60 1 195440623 195440641 GACAGAAAGCAAACAGGGA 58 195440581 195440600 TGATCACTCCAGATCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm2 ENSRNOG00000047085 ENSRNOT00000075420 1 1 1 127 18 28017620 28017638 AGAAAGCAGGAAACTGGTC 58 28017177 28017530 CCACTTGAAATGTAAGCCCA 59 NA InUTR Rattus norvegicus 81 Arpc4 ENSRNOG00000008994 ENSRNOT00000011937 2 1 1 80 4 145333082 145333100 TCTGCCTGGAGAACTTCTC 59 145333143 145334484 GGAGTTCTTTGCTACTCCTG 58 NA Rattus norvegicus 81 Lrrc69 ENSRNOG00000006498 ENSRNOT00000008656 3 1 1 80 5 28285823 28285843 AGGTTCCTACAGAACCTTCAG 59 28282486 28285783 TGTAAGCTGACAAACTTCCTC 58 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 1 2 2 86 9 9142230 9142251 AGAAGTGTAAATTCGAGAGGGA 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Sox9 ENSRNOG00000002607 ENSRNOT00000003511 2 1 1 149 10 101289137 101289155 CAAGAACAAGCCACACGTC 60 101289268 101290103 CTCTCGTTCAGCAGTCTCC 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863,ENSRNOT00000050393 2 2 2 80 1 188544158 188544176 GGATCTACACCTCTGTCCT 58 188544217 188547406 TGGAGTCAACTTTGTCTATGTG 58 NA Rattus norvegicus 81 Olr727 ENSRNOG00000060319 ENSRNOT00000048921 2 1 1 60 3 78862791 78862809 GCAAAGCTCTGTCTACCTG 58 78862832 78862851 CAAGGGACAAAGAACAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sirt5 ENSRNOG00000017866 ENSRNOT00000024066 1 1 1 90 17 23999410 24003586 CTGGAAATCCACGGAACCT 60 24003639 24003658 ATAAGGCTGGACAAATCGGA 59 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 2 2 2 80 13 27909757 27910722 TGATCTCACTGTGGTGGAG 59 27910763 27910784 TTACTTTCTGTCAGGGTTTCTG 58 NA Rattus norvegicus 81 Tmem45al ENSRNOG00000042975 ENSRNOT00000002233 1 1 1 81 11 46080292 46080311 ACTACTAATGCACTTCCGCT 59 46080349 46081309 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 AABR07053879.1 ENSRNOG00000027574 ENSRNOT00000030148 3 1 1 102 3 132053451 132053469 CTCCTGCAACTTCAACAGC 60 132053533 132053577 CACCCTGTTGCAGTAAATGAG 60 NA Rattus norvegicus 81 Lhx8 ENSRNOG00000028348 ENSRNOT00000009370 2 1 1 80 2 260590518 260590537 AGAAGGTCCTCTGTAGAGTG 58 260589978 260590478 CACTAATCCCATTACCGTTCTC 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 3 3 3 80 2 188191511 188191531 CAGCTCATTGAAGACTTCACC 59 188191573 188192626 GGGAAATTCACTGGCAGTC 59 NA Rattus norvegicus 81 Tuba3b ENSRNOG00000031707 ENSRNOT00000044425 1 1 1 97 4 157793805 157794056 CACTGTGGTCGATGAAGTG 59 157793726 157793745 TGGCATAATTATTGGCTGCA 58 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000092083,ENSRNOT00000022203 1 2 2 80 17 15856622 15856641 TTACCGAGCACTGTACATCC 60 15856683 15857699 CTGCAATCTGAGTTGTGAGG 59 NA Rattus norvegicus 81 Prl8a9 ENSRNOG00000024843 ENSRNOT00000034490 3 1 1 81 17 39244302 39245279 ATGCAGATGTTGAAACCGA 58 39245322 39245342 ACTAGATGGTATAGAGGGCTG 58 NA Rattus norvegicus 81 Olr185 ENSRNOG00000017344 ENSRNOT00000023283 2 1 1 60 1 169913624 169913643 TTACTCATCGCTTTGGTCAC 58 169913666 169913684 TAGAGGTTAGCCAGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr185 ENSRNOG00000017344 ENSRNOT00000023283 3 1 1 60 1 169913625 169913643 TACTCATCGCTTTGGTCAC 58 169913666 169913685 ATAGAGGTTAGCCAGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234,ENSRNOT00000065211 1 2 2 100 2 187282131 187282149 AACTGGTCATCGATGAGCC 60 187282448 187282467 CTCCTTGGGACGTTTAGGG 60 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 3 2 4 102 6 52663090 52663108 ACTGTCCAGTGATGAAGGG 59 52663173 52667417 AAATGAGCAGAACGCAAGAG 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 2 1 4 132 6 52663179 52667422 CGTTCTGCTCATTTGGGAG 59 52667517 52668874 CTTCTGTGCTTCCACATCTG 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076777 1 1 4 90 6 52460158 52531803 CTGCTCCGACAATATGCAC 59 52531857 52531875 CTTGACCACCTGATTGCAG 59 NA Rattus norvegicus 81 Gabrp ENSRNOG00000032417 ENSRNOT00000043036 3 1 1 80 10 18488623 18488642 CTTCCTGGTGGTGTTATCCT 59 18487927 18488580 GTTGTCACTCCAATGCAGG 59 NA Rattus norvegicus 81 LOC100910111 ENSRNOG00000047953 ENSRNOT00000075359 3 1 1 60 2 35298943 35298963 TGTGGTCTTTGTTCTAGTTGG 58 35298985 35299003 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4e ENSRNOG00000061394 ENSRNOT00000078725 2 1 1 80 4 156273105 156273126 TTATGGGCAGAAGAAGTTACAG 58 156272974 156273065 TTCTTGACTGAACCTGATGC 58 NA Rattus norvegicus 81 Irf1 ENSRNOG00000008144 ENSRNOT00000010968 3 1 1 83 10 39113619 39113637 TGGACATCATGCCAGACAG 60 39113683 39114266 CATCTGTTGCAGCTTCAGAG 59 NA Rattus norvegicus 81 Selplg ENSRNOG00000000699 ENSRNOT00000000888 2 1 1 79 12 48578422 48578441 TAAAGGCAGAGACCTCACAG 59 48578509 48578527 TGAGGTCTCTGCCTTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 1 6 7 102 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610920 215611166 TTCATGTCTTCCAGCTCCT 58 NA Rattus norvegicus 81 Homez ENSRNOG00000014887 ENSRNOT00000019979 1 1 1 60 15 33527007 33527028 CATATGTGAAGGAAGAGTCAGC 59 33513138 33526986 CCCTTCAGAGACAGCTCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 LOC317456 ENSRNOG00000003883 ENSRNOT00000005153 1 1 1 101 X 43881280 43881450 GAAACACAGGGCAAATGGT 59 43881512 43881533 AGAAGTCTCCATGAATAAGGGA 59 NA Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 3 2 2 80 19 26076909 26076928 TGAAGAACTGGCAGTTTGTG 59 26075390 26076866 TGGTCTTGGGATCATTGGG 59 NA Rattus norvegicus 81 AABR07061003.1 ENSRNOG00000038336 ENSRNOT00000031103 3 1 1 60 4 102592995 102593014 CTGCTTATCAGCATTGGAGG 59 102593036 102593055 GTACCAGGCTCTGACTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam65b ENSRNOG00000018804 ENSRNOT00000048298 3 1 1 80 17 42351715 42351733 CACCACAGGAAATGAGAGC 59 42348478 42351671 AAGACGATTTGCTGAACGA 58 NA Rattus norvegicus 81 Prdm13 ENSRNOG00000007683 ENSRNOT00000010126 2 1 1 80 5 35829450 35829763 GAGGACAGATCTTCTATCGGG 59 35829390 35829411 GAGCCAAGGAGTTAGAATACCA 60 NA Rattus norvegicus 81 Rit1 ENSRNOG00000020232 ENSRNOT00000027455 1 1 1 80 2 188087742 188087761 TTGAAGCCATGACAATGCAG 60 188087799 188095931 GGATCTTATAGGCATCTTCAATGG 59 NA Rattus norvegicus 81 Mtch1 ENSRNOG00000000527 ENSRNOT00000000635 3 1 1 80 20 6938343 6938528 AAACAACTGTGGACTGCAG 59 6938281 6938300 CTCAAGTACTTCCAGCAGTG 58 NA Rattus norvegicus 81 S100vp ENSRNOG00000028310 ENSRNOT00000023564 1 1 1 80 2 190629350 190631570 TTCTAAAGGCAATGGATGAAGC 59 190631610 190631629 CCCAAATCTCATCAAAGGGC 59 NA Rattus norvegicus 81 Cav2 ENSRNOG00000057713 ENSRNOT00000080271 2 1 1 80 4 44574078 44578618 GTCTGCACATCTGGATCCT 59 44578661 44578680 CACTCTTCCATATCGTCTGC 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 3 2 2 81 1 174376870 174376890 GTAAATGTATCTGCCCTCCCT 59 174372307 174376830 AGGCAATCACAATCTTTCTGAG 59 NA Rattus norvegicus 81 Hoxd4 ENSRNOG00000001578 ENSRNOT00000002145 1 1 1 80 3 61649632 61650206 CATGTGAATTCGGTGAACCC 60 61650249 61650267 TAGGACTTGCTGTCTGGTG 59 NA Rattus norvegicus 81 Lrrc15 ENSRNOG00000038539 ENSRNOT00000002348 3 1 1 60 11 74051653 74051673 CACATCTGTTTCCTCTACCAC 59 74051694 74051713 GGTTAGATCGGTGTAGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esf1 ENSRNOG00000004777 ENSRNOT00000034487 1 1 1 80 3 133217647 133217665 TGGACATGGACTTTGAAGC 58 133212875 133217603 CATCTTCACCTTCTGGTGC 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000009617 ENSRNOT00000013281 2 1 1 80 10 105244439 105244457 ATGAGGATCCAGCTCTGAG 58 105244153 105244395 TCAGCTCAGACTTCTCCAG 58 NA Rattus norvegicus 81 Spryd7 ENSRNOG00000015095 ENSRNOT00000020419 3 1 1 80 15 41884293 41884313 CTGGAGGTTGTTTAGCTAGTG 59 41880796 41884251 CCCAGATTCCGGTAGACTG 59 NA Rattus norvegicus 81 Ak3 ENSRNOG00000052506 ENSRNOT00000079875 3 1 1 81 1 247159492 247159510 CCGGATGATGTCATGACTC 58 247149356 247159447 TTGGAAATCCGTCCAACAG 58 NA Rattus norvegicus 81 Asna1 ENSRNOG00000003747 ENSRNOT00000067518 1 1 1 80 19 26134224 26134243 TGGCCTCCAAGTTAGAAGAG 59 26134074 26134181 TGAAGGTCGTCTGTTCAGG 59 NA Rattus norvegicus 81 Mir743a ENSRNOG00000041236 ENSRNOT00000062989 2 1 1 60 X 151252874 151252892 ATTCAGATTGGTGCCTGTC 58 151252832 151252851 CTCCACTCTACCCAGTTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lin9 ENSRNOG00000023304 ENSRNOT00000074148 3 1 1 81 13 98947411 98948756 GAACCAAAGTTACAGCACGA 59 98948798 98948818 GCATTAAGAGTATCCACAGCA 58 NA Rattus norvegicus 81 Itk ENSRNOG00000006860 ENSRNOT00000009211 2 1 1 80 10 31469916 31469935 ACAACTACCTCCTGTACGTG 59 31468114 31469876 TCCTCGTTTCTTCTTTAAGGGT 60 NA Rattus norvegicus 81 Dpysl2 ENSRNOG00000009625 ENSRNOT00000012996 1 1 1 80 15 43485509 43486933 GATAAAGCTGTGGTCACTGG 59 43485448 43485466 ATTGAAGACTTTGGCTGCG 59 NA Rattus norvegicus 81 Bzw1 ENSRNOG00000013977 ENSRNOT00000019486 1 1 1 80 9 65289048 65289843 CACTTGAAGCAATACAGCCC 60 65289881 65289904 CTGAATCTTCAGTAACAGAGTCAG 59 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 3 2 2 88 1 247871967 247876370 TATATCACTGCTGAAGAGGCC 60 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Rsph1 ENSRNOG00000057862 ENSRNOT00000084726 2 1 1 100 20 10001713 10003553 TCACAGATGTGGAAAGAGGT 59 10001632 10001650 CCACAAGGCCAATTCTGTG 59 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849,ENSRNOT00000084308 1 3 3 61 7 18577191 18577209 AGTGACTTCAAGGGATGGC 60 18576711 18577166 CACTCGGTGTATCCAAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Sox7 ENSRNOG00000012049 ENSRNOT00000016503 3 1 1 81 15 47293949 47293968 AGGATGAGAGGAAACGTCTG 59 47294012 47297510 TTCCATGACTTTCCCAGCA 59 NA Rattus norvegicus 81 rno-mir-340-1 ENSRNOG00000045609 ENSRNOT00000073344 3 1 1 60 10 35571785 35571805 GAGACTGATTGTCATGTGTCG 59 35571822 35571845 CCAGGTATGGCTATAAAGTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brcc3 ENSRNOG00000048061 ENSRNOT00000071068 3 1 1 60 9 9865798 9865817 GAAAGAGGAGGTGATGGGTC 60 9865757 9865775 GGACTCACTCCTTACGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd1 ENSRNOG00000024335 ENSRNOT00000036585 3 1 1 81 3 55925743 55928438 GCTATCGTGTTATTCAGGTCC 59 55925682 55925700 CTCAGGTAGTCCATCCGTG 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617,ENSRNOT00000000618 3 2 2 80 20 5973245 5973263 CTCGGCTGACATAATCCAC 58 5973565 5974874 AAATCCAGAATCTTCAGCTCAC 59 NA Rattus norvegicus 81 Rnf11l1 ENSRNOG00000048819 ENSRNOT00000071608 2 1 1 60 9 86653637 86653656 GACCCAATTCGATTTCTGCC 60 86653596 86653617 ACCAGTCATCTATACAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 1 2 2 93 15 48443505 48443524 CTGAACAAGGTAGTGGTGGT 60 48434185 48443449 TACGGACAACCATGATGGG 60 NA Rattus norvegicus 81 Arhgef5 ENSRNOG00000005506 ENSRNOT00000044780 1 1 1 80 4 72722649 72722668 GGAGAAGAAACCAAAGGAGG 58 72722710 72722935 TGATAAAGCAGCTGAGAGGA 59 NA Rattus norvegicus 81 Cib1 ENSRNOG00000033498 ENSRNOT00000042558 2 1 1 80 1 142016066 142016165 AGCTCATCGACAATATCCTGG 60 142016006 142016024 AGATGACGTGCTGGAACTC 60 NA Rattus norvegicus 81 Adam19 ENSRNOG00000042980 ENSRNOT00000008184 1 1 1 80 10 31206714 31206735 TGAAACGGGAAGATTTACACTC 59 31206776 31211286 GCCGGTTCTTCTGAAACTC 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000045937 ENSRNOT00000075045 3 1 1 83 X 43015834 43015852 TCTCAGCAACATGAAGCCA 60 43014206 43015787 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 1 2 2 80 1 86981633 86981651 GAAACACAGCTGGATGTGG 59 86981691 86981842 GGTAAGATAATACCCAGCTTCTC 58 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000057073 1 1 2 119 1 85299512 85299530 ACTTACGTCCAGCTCTGTG 60 85292554 85299431 GGGATCATCCTGTAGACTAGG 59 NA Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022672,ENSRNOT00000022543 2 2 2 80 4 71656891 71656910 TCTAGTCACCCTCTTCAAGC 59 71656950 71661380 AGTTTCTCTTGCATTTCCTGTG 60 NA Rattus norvegicus 81 Ppap2a ENSRNOG00000009980 ENSRNOT00000066098 2 1 1 81 2 44697583 44697601 TGACAGTACCGTCACAACC 60 44697640 44716584 CAGAGTTTCTCCAGTAATCATAGAG 59 NA Rattus norvegicus 81 Rai2 ENSRNOG00000006670 ENSRNOT00000008703 1 1 1 185 X 34794510 34794528 GTGACAGCAAAGACAGAGG 59 34734208 34734226 TTGAAAGGTTCTGGGACTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638 2 1 2 111 13 90704017 90704036 GAGAAGGTGGAGGAAGAAGG 60 90703284 90703943 TGCCTGTAACCTTGGACTC 59 NA Rattus norvegicus 81 Pou3f4 ENSRNOG00000002784 ENSRNOT00000003724 2 1 1 60 X 82144365 82144383 ACCACTCGGATGAAGAGAC 59 82144406 82144425 TTGAATTGTTTGGCGAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca6 ENSRNOG00000046890 ENSRNOT00000073149 2 1 1 80 10 98514962 98514982 GAAGTCTCCATGTCAACTCTG 59 98513788 98514921 CCCTTTCTCAAAGTCCTGTG 59 NA Rattus norvegicus 81 Eif1ax ENSRNOG00000005736 ENSRNOT00000008509 3 1 1 80 X 37584635 37585470 TGGGCAAGAATATGCTCAG 58 37585514 37585532 AGCCTCTTTACACCATCGA 58 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000020648 2 1 2 80 17 15478335 15484035 ATCTCAACAGGAGAAGAAATGG 58 15478276 15478296 TTGGCCGTATACTCTAACTCC 59 NA InUTR Rattus norvegicus 81 Tmem159 ENSRNOG00000048250 ENSRNOT00000075003 1 1 1 80 1 189873046 189873064 TCCAGAGACTTACAGGAGC 58 189873108 189883214 AAAGGCAACCACCTTTGAG 59 NA Rattus norvegicus 81 Dtwd2 ENSRNOG00000059142 ENSRNOT00000088900 1 1 1 80 18 43905159 43905177 CCATATCTGCCAGTTCGTC 58 43901815 43905116 CAACACTTTGCTTTCCTCTG 58 NA Rattus norvegicus 81 Nme2 ENSRNOG00000002671 ENSRNOT00000003611 1 1 1 155 10 81650957 81650975 TACATGAACTCAGGGCCTG 59 81648437 81649999 GTGAATGATGTTCCTGCCA 58 NA Rattus norvegicus 81 Fut8 ENSRNOG00000008451 ENSRNOT00000011220 3 1 1 80 6 100473831 100473852 ACTGTGTTTAGACCTGTAAGTG 58 100473892 100511426 GTCATTCACTTCACCTGACC 59 NA Rattus norvegicus 81 Ifit1 ENSRNOG00000019050 ENSRNOT00000025770 3 1 1 60 1 252944968 252944988 TGATCCAACTGAAGACATCTG 58 252945007 252945028 AATTCCTGTATATTCTCCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsc1 ENSRNOG00000011470 ENSRNOT00000016904 3 1 1 80 3 7254121 7254142 AGAAAGAGCAGATTCTTCAAGG 59 7254181 7254621 CCAGGTAGATCCTCTAATCCG 59 NA Rattus norvegicus 81 Arsj ENSRNOG00000000001 ENSRNOT00000055633 2 1 1 60 2 230661435 230661453 TGATTTCACTGGCTGAAGG 58 230661473 230661495 CAGATATCGTATCCATCTAGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef1b2l ENSRNOG00000031628 ENSRNOT00000047024 1 1 1 80 1 248210071 248212105 CACAGCATATCCAAGCCTC 58 248212148 248212167 GCTTACATCCTGACATCCTG 58 NA Rattus norvegicus 81 Eef1b2l ENSRNOG00000031628 ENSRNOT00000047024 2 1 1 80 1 248210072 248212106 ACAGCATATCCAAGCCTCC 60 248212148 248212168 AGCTTACATCCTGACATCCTG 60 NA Rattus norvegicus 81 AABR07051735.1 ENSRNOG00000031229 ENSRNOT00000050435 3 1 1 60 3 20517998 20518018 AATAGTTGGTTATCCTGGCAC 58 20517958 20517979 TATAGATGAGTAGTTGTGGAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563242 ENSRNOG00000022273 ENSRNOT00000030491 3 1 1 88 1 236496786 236500463 AAGAAGTCCATGGAAACCC 57 236496716 236496734 CTGAGGTAGCCAACAATGG 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 3 2 3 80 9 10369870 10369890 TGTGTTTCAGAAGGACAAAGG 59 10359317 10359414 TCCTCATGATCAGAGTCTTCTC 59 NA Rattus norvegicus 81 Acvr1c ENSRNOG00000004828 ENSRNOT00000059280 1 1 1 80 3 44278904 44278923 AGCTGACATCTATTCGGTGG 60 44277505 44278864 TGGTACTCTTCAACAAGTCCTC 60 NA Rattus norvegicus 81 Scara5 ENSRNOG00000014398 ENSRNOT00000019487 2 1 1 80 15 49083580 49083598 CAACGGCTCCATCTTTGAG 59 49083641 49101764 TTGTGACATGGACCATCCTC 60 NA Rattus norvegicus 81 Hpcal1 ENSRNOG00000005492 ENSRNOT00000007374 2 1 1 80 6 43102323 43102341 CTTCAGCATGTACGACCTG 58 43102385 43103933 ATCTTGTAGATGGCCTGCA 59 NA Rattus norvegicus 81 Zbtb38 ENSRNOG00000012386 ENSRNOT00000016625 2 1 1 60 8 104590726 104590744 TGAAGTGAGTGACCAGGAC 59 104590684 104590704 GGGCTTGTAGTTGTAGTATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla1 ENSRNOG00000028622 ENSRNOT00000033064 3 1 1 80 20 6123405 6123423 TCCTTCCAGTTCTCCTTGG 59 6123466 6124216 ATATTCCTGCAGGATCACCA 59 NA Rattus norvegicus 81 Clec4d ENSRNOG00000010181 ENSRNOT00000013536 1 1 1 80 4 156260419 156262138 CAACCCAAACGTGGTATTCTG 60 156262177 156262198 TGGTCATAAACAAGGACAACAC 59 NA Rattus norvegicus 81 LOC288913 ENSRNOG00000049931 ENSRNOT00000072494 1 1 1 86 19 25356317 25358370 AAGTTGAAGAAGAGCCTGGA 59 25356250 25356268 CTTCTTAGGCAGGCTGGAG 60 NA Rattus norvegicus 81 Olr1128 ENSRNOG00000029054 ENSRNOT00000044686 3 1 1 60 8 18926673 18926691 CAAACACAGGATCAGAGCA 58 18926715 18926733 GCAAGACAAAGCAAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1186 ENSRNOG00000030613 ENSRNOT00000040199 1 1 1 60 8 20980068 20980087 CCATGTACTTCTTCCTCTCC 57 20980108 20980128 ACAGTGGTAGTAGTGAAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gjd2 ENSRNOG00000008337 ENSRNOT00000011078 1 1 1 80 3 105469174 105470297 ATTGGGAGGATCCTGTTGAC 60 105469113 105469131 ATCATCGTACACCGTCTCC 59 NA Rattus norvegicus 81 Gjd2 ENSRNOG00000008337 ENSRNOT00000011078 2 1 1 80 3 105470335 105470354 GAATGGACCATCTTGGAGAG 58 105469170 105470292 CACAGTCAACAGGATCCTC 58 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263 2 1 2 80 8 102127401 102139607 GAAAGTACCCATTATGAACCGA 58 102127342 102127361 CCTCATGATTGCCAAGATCC 59 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263,ENSRNOT00000086491 2 2 2 81 8 102146738 102146757 GGTAATCATTGTGGATGCTG 57 102143549 102143568 TACATCCCAATTCTCAGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Dupd1 ENSRNOG00000013034 ENSRNOT00000017483 2 1 1 80 15 2796035 2805979 GACGACCACAGTAAGATCCT 59 2806022 2806040 GATCATCAGGTAGGCCAGG 59 NA Rattus norvegicus 81 Card11 ENSRNOG00000024277 ENSRNOT00000051382 3 1 1 80 12 15830162 15831921 AACCATGAAGGATACCGGA 58 15831963 15831983 CAGGCGGATATAGAAAGAGTC 58 NA Rattus norvegicus 81 LOC100909937 ENSRNOG00000047788 ENSRNOT00000073494 1 1 1 60 8 43024409 43024432 CATTCTTCTCACTATTGTCTCCTC 59 43024372 43024391 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir144 ENSRNOG00000035647 ENSRNOT00000053770 1 1 1 68 10 65291418 65291440 GGCTGGGATATCATCATATACTG 58 65291372 65291396 CCAGACTAGTACATCATCTATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed1 ENSRNOG00000008037 ENSRNOT00000061009 1 1 1 81 8 22541849 22541867 GAGGAGGTAGAAGGTTGGG 59 22541274 22541808 CTATGGATTCCTTGATGTCTTCC 59 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000013874 ENSRNOT00000018820 2 1 1 80 8 66863343 66863361 CTTCTGTCTCTGAGCTTGC 58 66862872 66863300 TGATCTTATCCTCCGTGACC 59 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 2 2 2 80 19 19699997 19700789 GTACCTTGCTGAACAAGTGAC 60 19700829 19700849 CCGTGTATGCTTACAACATCG 60 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 1 6 6 80 1 282683409 282683545 CATTCCTATGGTCATGGGC 58 282683587 282683607 GCTGTATCCTTTAGAACAGCC 59 NA Rattus norvegicus 81 LOC102553763 ENSRNOG00000029490 ENSRNOT00000024639 2 1 1 114 1 198794434 198794727 TCTCAAAGGCAACACAAGTG 59 198794339 198794357 CTCAAATCCTGGGCTTTGG 59 NA Rattus norvegicus 81 Olr1156 ENSRNOG00000029802 ENSRNOT00000049712 1 1 1 60 8 19811633 19811654 CTTGAAGATAGCATCATTGGAG 57 19811672 19811693 CAAGTGAGTTCCACAAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000000995 3 1 2 81 20 1878095 1878117 CATATAAGCAGACATGAGGACTC 59 1876756 1878054 CCGAATGGACAACACAGAC 59 NA InUTR Rattus norvegicus 81 March8 ENSRNOG00000012297 ENSRNOT00000017294 1 1 1 80 4 148392579 148394237 AAACCTTTGAGGAAATGGGA 57 148394280 148394298 GACATGGAACGTCACTGAG 58 NA Rattus norvegicus 81 Mul1 ENSRNOG00000016010 ENSRNOT00000021833 2 1 1 92 5 156859650 156859668 TTTGTGGAGAACTGCAAGG 58 156859723 156860704 ATAGTCATTCCACAGGTGGG 59 NA Rattus norvegicus 81 Nit2 ENSRNOG00000027797 ENSRNOT00000029420 2 1 1 80 11 45472531 45472870 CAGACATAGACCTGAAGAAGC 58 45472911 45472930 CTGAATAGAGGTCTGCTCGT 59 NA Rattus norvegicus 81 Ube2ql1 ENSRNOG00000034075 ENSRNOT00000041762 3 1 1 253 1 36187081 36187099 ACCTTCCCGGATAACTTCC 59 36225024 36225042 AAGGTTGCTTCAGCTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Snx7 ENSRNOG00000017077 ENSRNOT00000022947 1 1 1 80 2 221078688 221078708 ATTACAGTTGATGCACCAGAG 58 221072192 221078647 ACGAGATGTCTTGGTTACGA 59 NA Rattus norvegicus 81 Snx7 ENSRNOG00000017077 ENSRNOT00000022947 3 1 1 80 2 221072194 221078650 GGATCGTAACCAAGACATCTC 58 221072134 221072155 ACCAAAGGAAATCTTGGTAACG 59 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 1 2 2 80 1 88038172 88039264 ACACTCAAGACTCTGCTGG 59 88038110 88038130 CTTCGTCTTCTTCAGGTTGTC 59 NA Rattus norvegicus 81 Spag5 ENSRNOG00000011777 ENSRNOT00000015651 3 1 1 80 10 65578359 65578634 CCATGGAGTTTGTAGATGAAGAG 59 65578672 65578692 CTAGTGTGGCTTTCAACTGAC 59 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667,ENSRNOT00000018014 3 2 2 84 9 65336898 65340274 TCTTTGGAGAAGCCTTTGC 58 65340321 65340340 CTATCATTGTTGCCAGGGAG 59 NA Rattus norvegicus 81 RGD1563570 ENSRNOG00000029461 ENSRNOT00000046342 1 1 1 60 14 43694359 43694377 CAAACAGCCAAATTCTGCC 58 43694400 43694419 CTTGCCGTTCTTAATGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Skor1 ENSRNOG00000013959 ENSRNOT00000018756 2 1 1 80 8 68033546 68033565 ATGGGCTTACTTTGGATGTC 58 68032199 68033505 ATTTCTGCAGTTCTTCTCTGG 58 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000060802 3 1 3 94 11 45888302 45888320 AGAGACAAGGATGAGCGAG 59 45888378 45902395 GGAAATGCAGGAAATGGGC 60 NA Rattus norvegicus 81 Olr480 ENSRNOG00000050467 ENSRNOT00000049630 1 1 1 60 3 73474999 73475018 GATGTTGCTAATCATTGCGG 58 73474958 73474977 AGAAATGACCACAATCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem170b ENSRNOG00000031495 ENSRNOT00000046157 3 1 1 83 17 22863922 22863940 GATGATCAACCTGTCGGTG 58 22839509 22863876 CAATACCACATCTCCGTGAG 58 NA Rattus norvegicus 81 Kdelr2 ENSRNOG00000001083 ENSRNOT00000001438 3 1 1 80 12 13195898 13197256 CTCTCCTCTTGAGATCTTGTG 58 13195838 13195857 TTGCTGATCATGAAGAGCTG 58 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 2 2 2 80 1 255200579 255215921 CCTAACATCAGGAATGTGAGAG 58 255215959 255215980 TAATGAATCCATAGACATGCGC 59 NA Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 3 2 2 81 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093298 TAGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 3 4 5 80 4 22397491 22397512 CATCATGAATCAGGAGATAGGC 59 22396745 22397451 TTGGAGACGTCATCTGTGAG 60 NA Rattus norvegicus 81 H1fnt ENSRNOG00000029545 ENSRNOT00000046402 2 1 1 60 7 139871754 139871774 AGTCCTTGGTCTACAGATGAG 59 139871714 139871732 CCTGTCTCTTCTCTTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam84b ENSRNOG00000004744 ENSRNOT00000006279 1 1 1 60 7 101139931 101139949 CCTGGTGGAGTTTGTATCG 58 101139889 101139908 GAAATTGCCCACGTAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plac8l1 ENSRNOG00000018820 ENSRNOT00000025453 1 1 1 89 18 36502515 36513063 AATCTCCGACTTGAGGAGC 59 36502444 36502462 ATAGCTGTGACTGTGGTCC 59 NA Rattus norvegicus 81 Rtbdn ENSRNOG00000043215 ENSRNOT00000064289 1 1 1 80 19 26069283 26069301 ACATAGACAGACCAGAGGC 59 26069343 26069487 GAAAGAATTCACATTCTGGGC 58 NA Rattus norvegicus 81 Srp54a ENSRNOG00000032776 ENSRNOT00000052076 1 1 1 80 6 76017900 76018453 TAAACTTCTTGGAATGGGTGAC 59 76018492 76018512 ATAAGTGCCTCGTTATCATCC 58 NA Rattus norvegicus 81 Prm3 ENSRNOG00000002564 ENSRNOT00000003451 2 1 1 60 10 4951758 4951776 ATGAAGAAACTCGTGGCCT 59 4951800 4951818 CCTCACCCTCTGATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1689 ENSRNOG00000046312 ENSRNOT00000072222 3 1 1 60 20 1224855 1224876 TGATTTCCTGTCTGTAATTGCC 59 1224816 1224835 GTGGACATAGGAGAAGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam160b1 ENSRNOG00000017225 ENSRNOT00000023247 1 1 1 80 1 278217710 278217729 GAAGCAAAGTCCTCCTACCA 60 278217772 278219168 GTAGTCTCGGAACTGCCTG 60 NA Rattus norvegicus 81 Fam104a ENSRNOG00000002851 ENSRNOT00000081519 2 1 2 87 10 102193555 102193573 GATGACAACCACCCTCCTC 60 102183489 102193505 TTACAGGCACTTCCTCTGTG 60 NA Rattus norvegicus 81 Ypel3 ENSRNOG00000019721 ENSRNOT00000026755 3 1 1 85 1 198211952 198213344 GCTGGAAATATGAGCAAGC 57 198213391 198213411 GTCTTTGATCATGTGGTTGAG 57 NA Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 1 1 1 68 2 54962605 54962623 TTACTCATCGCCACCTCTC 59 54953400 54962573 GTTGATGAACACTCGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Pygl ENSRNOG00000006388 ENSRNOT00000009183 3 1 1 80 6 92613114 92613134 TATGAACAACACGGTGAACAC 59 92612569 92613075 CCGACATTAAAGTCTTGAAGGT 59 NA Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 3 1 1 60 10 64175220 64178041 GACGCAGATAAACATCACAG 57 64178063 64178082 CGTGGAAAGATGAAGAAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Grifin ENSRNOG00000001251 ENSRNOT00000001686 2 1 1 110 12 16170778 16171642 CCTTTGAGGTGGAGGTGAG 60 16171715 16171734 CTCTGGTGATGGTAGCTAGC 60 NA Rattus norvegicus 81 Cdh6 ENSRNOG00000013535 ENSRNOT00000018246 2 1 1 80 2 63102221 63108331 TCGTGATCCTACTAGTGACAG 59 63102161 63102182 CTTTGGAAATGATCAAAGGCTC 58 NA Rattus norvegicus 81 RGD1564712 ENSRNOG00000043158 ENSRNOT00000064226 1 1 1 88 4 79326536 79349834 AATGCAAAGGTCAACCACC 59 79326466 79326484 GATTGGAGTTCCGGTAGGG 60 NA Rattus norvegicus 81 RGD1564712 ENSRNOG00000043158 ENSRNOT00000064226 3 1 1 89 4 79326536 79349834 AATGCAAAGGTCAACCACC 59 79326465 79326483 GGATTGGAGTTCCGGTAGG 60 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 3 2 2 80 10 29039174 29039309 GGAAGAATCCAGACGAAGTG 58 29039350 29039370 GTGTTTGAGCCATTGAAATGG 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107,ENSRNOT00000073209 2 2 2 80 10 59692213 59692231 AGTGACTTGGCAGCTAGAG 59 59692272 59692993 TTCTCATTGGAATTGGAGATGG 59 NA Rattus norvegicus 81 LOC100909754 ENSRNOG00000047153 ENSRNOT00000074462 3 1 1 60 10 61067241 61067263 GTTCTTTGGGACAGTAATAAGGG 59 61067281 61067301 CACTGAGTTAGAGGAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056,ENSRNOT00000004885 2 2 2 80 10 34960231 34960250 AACACTGGTCGATCAAGAGG 60 34959502 34960193 CTCCTTCTGATCTAAGACCTTCTC 60 NA Rattus norvegicus 81 Ccdc182 ENSRNOG00000010446 ENSRNOT00000013882 2 1 1 60 10 75620800 75620818 GGCATAGTTCGCAACAAGG 60 75620842 75620860 GTTCACGAAGCTGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bphl ENSRNOG00000017577 ENSRNOT00000023914 1 1 1 80 17 31522061 31522079 TCCGCAAGATGGTGATCTG 60 31511734 31522018 AAACATCTCGGATACCCTGG 59 NA Rattus norvegicus 81 Polr3d ENSRNOG00000010028 ENSRNOT00000013390 1 1 1 80 15 52130240 52130402 TTCTTTCCTGCAGGAACTG 58 52130178 52130196 TGCTTCACATGTCCTAGGA 58 NA Rattus norvegicus 81 Fads6 ENSRNOG00000021380 ENSRNOT00000029001 1 1 1 81 10 103835422 103836217 AGCTCTTGAGCATTTGAGGA 60 103835360 103835378 CTGAGAGTAAAGGCCCAGG 60 NA Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 1 2 2 80 17 42813730 42813751 AGCCATAGAGCTTAACTATGGA 59 42812812 42813690 TCAATTCCAGGCTGAATCCT 59 NA Rattus norvegicus 81 Klk8 ENSRNOG00000018580 ENSRNOT00000025174 1 1 1 81 1 99736776 99736796 CAATCTGTGTCCCAAAGTTGG 60 99736836 99740284 GTTTGGAAAGTTCTCTTGAGGG 60 NA Rattus norvegicus 81 Olr477 ENSRNOG00000031811 ENSRNOT00000040714 3 1 1 60 3 73426004 73426024 TGTTGACCTCTGTTACTCCTC 59 73426046 73426064 CTCCACCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 3 2 2 80 18 47867588 47868096 CATCTTCACCCAGTTCACC 58 47868140 47868158 CTGTAGACTCGTCATCTGC 58 NA Rattus norvegicus 81 Ncbp1 ENSRNOG00000023605 ENSRNOT00000030825 1 1 1 80 5 61764894 61765993 ATCTTCCTACAGCATCACCA 59 61766036 61766054 AGGATCTAACTCTGCCGTG 59 NA Rattus norvegicus 81 Olr1149 ENSRNOG00000057779 ENSRNOT00000091744 3 1 1 60 8 19586726 19586746 ATTCTTTCTTCTGGGACTGAC 58 19586686 19586706 GAACAAACTGACCAATACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk1c10 ENSRNOG00000046297 ENSRNOT00000045756 3 1 1 87 1 99890979 99891095 CCCTGAATTGGGAATTACCTG 59 99890912 99890930 TTCTGTTCGTAGGCTTCGA 59 NA Rattus norvegicus 81 Trappc6a ENSRNOG00000017468 ENSRNOT00000023652 1 1 1 133 1 80423396 80423414 CAGTACCTAGAGGAAGCCC 59 80423626 80424176 ACCACCTGGAACTTACAGG 59 NA Rattus norvegicus 81 Zfp41 ENSRNOG00000007489 ENSRNOT00000009823 1 1 1 60 7 116655395 116655413 AGAAGCCCTATGAGTGCAG 59 116655436 116655455 CGAATGTGGTCTGTCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il20rb ENSRNOG00000023214 ENSRNOT00000034188 3 1 1 80 8 108751953 108756513 TGTGGAGATGCAAGGAGAG 59 108751891 108751909 GCAACCACAAGAATCAGCA 59 NA Rattus norvegicus 81 Adam8 ENSRNOG00000017897 ENSRNOT00000024369 2 1 1 80 1 212323982 212324383 GAGGGAAAGGTTTGCATGG 59 212323920 212323939 GTTGTTGCATTTAGCAGAGC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000086771 2 1 6 87 1 261995435 261996440 AGGAGATTCAGAACGCCTG 60 261995366 261995385 AGTATGGCTACTCACTCCCA 60 NA Rattus norvegicus 81 RGD1560917 ENSRNOG00000034128 ENSRNOT00000043351 1 1 1 60 8 91820789 91820807 TTCCTGACTGCTGTGACTC 59 91820831 91820849 TTGTCCACTTGCTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810,ENSRNOT00000089763 1 2 2 80 8 48719474 48719495 TCTCTGGTTTCTTAATGGTCTG 58 48719536 48719874 GATGGCTCAAACCACTTCC 59 NA Rattus norvegicus 81 Zfp69 ENSRNOG00000028662 ENSRNOT00000030016 3 1 1 97 5 139863012 139863673 GTATCAGTGGGATATCAACTTTCC 59 139862938 139862956 GAATCCTTTGGGCCTTGAC 59 NA Rattus norvegicus 81 LOC687679 ENSRNOG00000032232 ENSRNOT00000050931 3 1 1 60 1 91588478 91588498 CATGTACAAGGAATACTGCGG 59 91588438 91588457 CACACTCATCAATCACGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub1b ENSRNOG00000007906 ENSRNOT00000010406 1 1 1 80 3 110408508 110413235 CCATGATAAAGGCATCTTCTCAG 59 110413275 110413293 AGTCCTCATTCAGACGCTC 59 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000088770 2 1 2 65 19 41010090 41010108 CAACCCTGAGGATTCCCTG 60 41004669 41004688 GTTTCCTTTCACTTGCCAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1562400 ENSRNOG00000046628 ENSRNOT00000075318 3 1 1 60 1 172321986 172322005 TGCCCAACTCTAGATACTCC 58 172321945 172321963 ACCACCAGGTAGAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolk ENSRNOG00000016989 ENSRNOT00000022786 2 1 1 60 3 8850506 8850526 AACATTCGAGGGAACTATGAC 58 8850466 8850484 TAGGATCAGAGCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5l ENSRNOG00000028884 ENSRNOT00000050878 1 1 1 84 8 49220668 49221948 CAGTTAAGGAAGCTGTGCTG 59 49220603 49220622 CCACGTTTGCCTATGATCTC 59 NA Rattus norvegicus 81 Mir6327 ENSRNOG00000050007 ENSRNOT00000072658 3 1 1 60 10 68977679 68977697 ACTGCGATGTCTGTAGTCC 59 68977637 68977657 GTGGGAGATGGATCTACAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nabp1 ENSRNOG00000015416 ENSRNOT00000021403 1 1 1 80 9 55050456 55050684 CTGGAGATAGGACGAGTGAC 59 55050726 55050745 GATGCTTCCCGTTCTATCAG 58 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000011984,ENSRNOT00000080155 1 2 2 80 7 98834522 98834544 TATCAGAAGATCTGAAGAGCCTG 60 98832993 98834485 CTTTCAAGTCCAGAATCACCTG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000086937,ENSRNOT00000077991 2 4 9 80 20 2083547 2083567 AAGAATCCAAAGACCCTAGGA 58 2079783 2083508 GTTGTAATTCTGGTCACATCAG 58 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919,ENSRNOT00000082489 2 2 2 80 3 7795360 7795379 ATGTCAAGGTCAAAGTGGAG 58 7776227 7795317 GGTAAGGGTTCTCATGGGA 58 NA Rattus norvegicus 81 Cuzd1 ENSRNOG00000029945 ENSRNOT00000050519 1 1 1 80 1 201890424 201890444 ATAGTCACTGACTGGACAAGG 59 201889161 201890385 GTTTGGAATAGTGGTACCAGAG 59 NA Rattus norvegicus 81 Ap5z1 ENSRNOG00000001107 ENSRNOT00000001469 2 1 1 108 12 14171572 14171590 ACTTCACAGAGGACCAGTG 59 14170307 14171501 GACTTGTCATCTGCATCTGG 59 NA Rattus norvegicus 81 Ap5z1 ENSRNOG00000001107 ENSRNOT00000001469 3 1 1 109 12 14171572 14171590 ACTTCACAGAGGACCAGTG 59 14170306 14171500 TGACTTGTCATCTGCATCTG 58 NA Rattus norvegicus 81 Supt5h ENSRNOG00000032034 ENSRNOT00000048905 2 1 1 80 1 85466398 85466497 CAAGAACAACAAGGTGAAAGTG 59 85466536 85466556 CCATCCTCACCATCAATACTC 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000075810 2 1 10 64 18 29995653 29995671 CTCAAGACCGACCTCATGG 60 29995697 30185397 GGGTTGTCTGTAGAACTTGGA 60 NA DesignNoJunction Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 1 2 2 80 16 19512856 19512875 TGATGATGCCCTTAAAGCCA 60 19512917 19515087 CCATGTTCATCCTTGCTCAG 59 NA Rattus norvegicus 81 Qrfpr ENSRNOG00000014414 ENSRNOT00000039615 1 1 1 87 2 122894203 122898613 GCCTTGAGATTAAGTATGACTTCC 59 122894139 122894157 TAGATTCTCTGGTGCACGG 59 NA Rattus norvegicus 81 Mmaa ENSRNOG00000011618 ENSRNOT00000015508 2 1 1 80 19 32323106 32323126 GATCCAAGCAGAGTATGTGAG 58 32323166 32324037 GAAATTCGAATCACCTTTGGC 59 NA Rattus norvegicus 81 Fam117b ENSRNOG00000022066 ENSRNOT00000031261 2 1 1 81 9 66755547 66758475 CAGAACAGCTTAAAGAGATTGC 58 66758516 66758535 TCTTTATCTCGATGGTGACG 57 NA Rattus norvegicus 81 RT1-M5 ENSRNOG00000033136 ENSRNOT00000052311 2 1 1 80 20 2039870 2039893 GACATTTCCAAGAATTCCCTAGTG 60 2039664 2039832 AAAGACATGAGTGCCATCCT 59 NA Rattus norvegicus 81 Hist3h2ba ENSRNOG00000043419 ENSRNOT00000066190 3 1 1 60 10 45289967 45289985 TCGTCAACGACATCTTCGA 59 45290009 45290027 TTGTTGTAATGAGCCAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 1 2 2 82 2 144551513 144553592 CACATGAAGGATGTCGTGC 59 144553638 144553656 AGGTCAGTGTTGAGGTTGG 60 NA Rattus norvegicus 81 Ccl11 ENSRNOG00000007335 ENSRNOT00000009756 1 1 1 80 10 69435010 69435029 CACAGCACTTCTATTCCTGC 59 69435072 69438322 GAAGTTGGGATGGAACCTG 58 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000087547,ENSRNOT00000051249,ENSRNOT00000087919 3 4 4 80 X 54237971 54237992 GTCTTGAACCTGAGGATTTGTC 59 54235615 54237933 AACGGATTTCACTTTCTTCAGC 60 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000080041 3 1 2 109 1 211256501 211256525 GCTTCCGTCTCTATTTATAATGGTG 60 211251538 211256436 ATCTTCCTCAGACTGTCACAG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 2 3 4 80 3 62902463 62902965 AATCGACTATGAGACCCTGTG 59 62902403 62902422 TGTCTCCAGTTGTGGTAGAG 59 NA Rattus norvegicus 81 AABR07065559.1 ENSRNOG00000052017 ENSRNOT00000078113 3 1 1 193 6 134627647 134627665 TGGATTTCTTCAAGCAGGC 59 134627825 134627843 CTGGTACTTGGTGACCAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC301124 ENSRNOG00000046002 ENSRNOT00000075344 2 1 1 83 9 10447562 10447580 GGGTCTGGAGATGTCACAG 60 10447781 10448565 GAGATGATGCCTGAGTTCCA 60 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642,ENSRNOT00000083851 1 2 2 82 20 12076643 12085632 GACAAGATAGCACGCTGGA 60 12085677 12085696 ATGCTGGAGAAGTAGATGGG 59 NA Rattus norvegicus 81 Lppr4 ENSRNOG00000016872 ENSRNOT00000022625 2 1 1 80 2 220334547 220334568 TCAGTATAAGAACCATCCCGTC 60 220334608 220337879 GCATACAGGCCCAAATACAG 59 NA Rattus norvegicus 81 Hnrnpll ENSRNOG00000006929 ENSRNOT00000009175 1 1 1 80 6 2713464 2717489 TTTGGGAAGACGAGATAGAGG 59 2713404 2713426 CCATCATGTCTAAACGAAGAAGG 60 NA Rattus norvegicus 81 Hnrnpll ENSRNOG00000006929 ENSRNOT00000009175 3 1 1 80 6 2708450 2713413 GACATGATGGCTATGGATCG 58 2708389 2708409 GTTCAGGTGTATCTCTAGAGC 57 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 3 2 2 80 15 55056796 55056816 TGTCAAACAAGCAAGTCATCG 60 55056856 55058366 AGGCAAATACCTCTCCATCAG 60 NA Rattus norvegicus 81 Erlec1 ENSRNOG00000007283 ENSRNOT00000050321 3 1 1 80 14 115337196 115338646 AGAAGTCAAATGAGATTCCCAC 59 115337137 115337156 GTGTACCATTTCCCATTCCC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 1 3 3 80 1 32118936 32118956 TCATCAATAATGTGGAGGTGG 58 32118456 32118894 TGCTGTCCATCTCTTCCTC 59 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000087015,ENSRNOT00000091085 3 2 2 60 3 77709897 77709917 GAAGACCATTTCCTTTGGCTG 60 77709857 77709876 CCCTGAGAAGAAATGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spatc1l ENSRNOG00000045929 ENSRNOT00000074268 1 1 1 80 20 12831250 12831269 CTAAGAAGGTGTGCTTCTCG 58 12826865 12831212 TCTGGATCTCATTGAGGTAATAGG 59 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000035411 3 1 2 81 2 181900841 181904571 CTGAGAAGTTTCACGAGACTG 59 181900780 181900799 GACACTAATCCCAAGACAGC 58 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536,ENSRNOT00000087194 2 2 2 80 9 66923357 66923375 AAAGAGGACTCTGTTGGGA 58 66923416 66925486 GTATCTTCTTCAACAAGAGCTG 57 NA Rattus norvegicus 81 Grik3 ENSRNOG00000008992 ENSRNOT00000045513 2 1 1 80 5 143693427 143693447 ATCTGGATGTACGTGCTACTC 60 143693486 143698168 CCATTCATAAGGGCTGAATCTG 59 NA Rattus norvegicus 81 Adcy3 ENSRNOG00000003999 ENSRNOT00000005389 1 1 1 80 6 28636638 28636656 GATGAGCACGAACTGAACC 59 28636697 28636859 TGTGTTTCTCTTCTTTACCACC 59 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000032348 ENSRNOT00000043508 2 1 1 60 6 135139390 135139409 TTATGCCCGAGATGAAACTG 58 135139429 135139450 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspd1 ENSRNOG00000014525 ENSRNOT00000066589 1 1 1 80 9 61682218 61683066 CTGTGTTGAAGGTTGGAGG 58 61682156 61682176 TTGTAGCATTGAGAGCATCTG 59 NA Rattus norvegicus 81 Slc38a2 ENSRNOG00000006305 ENSRNOT00000039002 1 1 1 80 7 138094877 138096138 CATTGAAGATACGAATGGGCTG 60 138094818 138094836 AATGGGAGAATGAGCACGA 59 NA Rattus norvegicus 81 Slc38a2 ENSRNOG00000006305 ENSRNOT00000039002 2 1 1 80 7 138094877 138096136 TTGAAGATACGAATGGGCTG 58 138094816 138094834 ACAATGGGAGAATGAGCAC 58 NA Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 3 2 2 87 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039668 195039686 GGGTCCTACTATGGACACC 59 NA Rattus norvegicus 81 Rragc ENSRNOG00000017426 ENSRNOT00000023514 3 1 1 85 5 141575062 141575080 CTTCGACCCAACCTTTGAC 59 141575129 141576065 CCATGTAGTCATCCTGTGC 58 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470,ENSRNOT00000043271 1 2 2 80 18 29592928 29593080 AAGGAAACCAAGAAAGATGAGG 59 29596355 29596375 AAGCATCCGATACACATTTCG 59 NA Rattus norvegicus 81 Zfp40 ENSRNOG00000011675 ENSRNOT00000015520 1 1 1 60 1 62557196 62557215 AAACCATTACAGAACCCACC 58 62557155 62557176 GGATTTGCCACATTCATTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 2 2 2 80 5 152375722 152375740 CAGCTCATCAGGGAGTCTC 59 152371302 152375679 ACCTTTAACCCTTTCCTCCT 58 NA Rattus norvegicus 81 Retnlg ENSRNOG00000001943 ENSRNOT00000002673 3 1 1 81 11 54514367 54514386 TCCCAGTGAATACTGATGGA 58 54513851 54514323 GGACAGTTATCTCGATGGG 57 NA Rattus norvegicus 81 Rcn1 ENSRNOG00000013452 ENSRNOT00000018074 1 1 1 86 3 95413133 95413151 CTACTCGGGAGGAGTTCAC 59 95411409 95413083 TATCCTCCAGGGTTTCCAG 58 NA Rattus norvegicus 81 Mycn ENSRNOG00000051372 ENSRNOT00000084924 2 1 1 95 6 38224074 38226146 CGACTCAGATGATGAAGACG 58 38223998 38224016 GCCTTGTTGTTAGAGGAGG 58 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 3 2 2 105 8 70726809 70728709 GAAGAAGGATTCCAAGGAAATCG 60 70728772 70728792 CAGAAGCTGGTTGTTAGTGAC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 1 2 2 93 2 189583037 189583058 AGAGAATCAAACTGCAAGTCTG 59 189584344 189584578 AGGATAATGCCCATGGCTC 60 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753,ENSRNOT00000075868 1 2 2 80 6 93440424 93441796 TATGCCAAGGAATCTTTGAAGG 59 93441836 93441855 AAATGGACACCAGAGGATGG 60 NA Rattus norvegicus 81 Pla2g4d ENSRNOG00000037231 ENSRNOT00000056258 3 1 1 80 3 112044838 112045139 ACTTTAAGGAGTGGGTGGA 58 112044776 112044794 CAAAGAGCTCAGAAGGGAC 58 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 3 2 2 80 11 61467130 61468656 ACATCTATCTGCATGTCCAG 57 61467069 61467090 TAGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Ezh1 ENSRNOG00000020336 ENSRNOT00000027640 3 1 1 80 10 89123328 89125375 CATGGTGAAGAAGAGATGATCC 59 89123269 89123288 CTGATTGAGGGCATCTACCA 59 NA Rattus norvegicus 81 Slc27a3 ENSRNOG00000015421 ENSRNOT00000020815 3 1 1 89 2 189761738 189761758 ATCTTGTACAGCTCTACACCC 59 189761029 189761687 TAGTGGCCAAAGACTCCTG 59 NA Rattus norvegicus 81 LOC498414 ENSRNOG00000030665 ENSRNOT00000044737 1 1 1 80 14 90823148 90823425 CTACCCTACATCCTGTGTCC 59 90823087 90823106 AGACGAATGACATTTGCCTG 59 NA Rattus norvegicus 81 Rn60_X_0587.3 ENSRNOG00000051287 ENSRNOT00000075855 1 1 1 140 X 59275967 59275987 TGATCTGTGATTCTGATCCTG 57 59275815 59275868 TCTTCTCCCAGAAGAAATTCAG 58 NA Rattus norvegicus 81 AABR07069845.1 ENSRNOG00000054847 ENSRNOT00000072823 2 1 1 60 8 41351153 41351176 GTTAGTTTCTTCTATGGATCTGGG 59 41351195 41351213 CAGTCTCAGCAGAAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052585.2 ENSRNOG00000023227 ENSRNOT00000068494 2 1 1 80 3 63567675 63567695 GCGGAAAGTACACAGTTAAGG 59 63567105 63567634 CCACTAGAGGAAGCACTGTC 60 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000084548 1 1 3 218 20 2099783 2099802 ACCTCTTCTCCACTCTTCTC 58 2099406 2099424 CATATAGCCTCGGATGGGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07054522.1 ENSRNOG00000047718 ENSRNOT00000072211 1 1 1 82 3 158944522 158944543 CTGGTTTGGATTGTCCAGAG 59 158944459 158944477 AATGTTTCCCACCACTGTG 58 NA Rattus norvegicus 81 Ints3 ENSRNOG00000015153 ENSRNOT00000020575 3 1 1 80 2 189767808 189767826 AAGTCGAAAGAATGCTGCC 59 189767651 189767765 TTTGTGTCTTCTTCCTCCGA 59 NA Rattus norvegicus 81 Atg16l2 ENSRNOG00000019413 ENSRNOT00000026286 3 1 1 80 1 166401865 166401883 ATGGCACCCTGTACATCTG 60 166401570 166401821 CATTGACAGCAGTGCAGTG 60 NA Rattus norvegicus 81 Uprt ENSRNOG00000021552 ENSRNOT00000033494 1 1 1 80 X 75399403 75399424 CAGACTTGTTGTAGAAGAGGGA 60 75399465 75400526 TCATACTTGTGCCCTGTCG 60 NA Rattus norvegicus 81 Mrpl50 ENSRNOG00000053615 ENSRNOT00000078957 1 1 1 82 5 64789253 64789271 TGTCGGTTTGCAAGAAGAG 58 64785830 64789209 TTCTCCTTCCTGGATCTAGAC 58 NA Rattus norvegicus 81 Ascl1 ENSRNOG00000004294 ENSRNOT00000005674 2 1 1 157 7 28038836 28039194 GACTTTGGAAGCAGGATGG 59 28038697 28038715 GAATCTAAGTCCTGGTGCC 58 NA InUTR Rattus norvegicus 81 Olr1741-ps ENSRNOG00000056241 ENSRNOT00000085309 1 1 1 94 20 1829940 1829959 CTACCACTGAGCTAAATCCC 58 1829809 1829827 ATCAAACCAGTCCGAAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 3 2 2 81 10 83289996 83290014 GTTCCAAGTCCTCCACCTC 60 83290054 83290604 TCACTACCTTGATCTGTGTATAGC 60 NA Rattus norvegicus 81 RGD1565048 ENSRNOG00000033207 ENSRNOT00000042106 3 1 1 60 14 25584946 25584964 ATCAAGGGTGAGACACTGG 59 25584904 25584924 TAGGGAAGTGAGCATACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000091495 3 1 2 85 X 156889612 156889791 AAGCTCCTCTGGAAAGACC 59 156889545 156889564 GGAAGCATAGATCCAAGGGT 59 NA Rattus norvegicus 81 Rn60_3_1464.1 ENSRNOG00000026836 ENSRNOT00000036834 2 1 1 60 3 139945349 139945367 GAAAGGCTAGATGTGACCC 58 139945307 139945327 TCCTTGTTGACTGAGTTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nde1 ENSRNOG00000058007 ENSRNOT00000086392 2 1 1 80 10 878518 878536 AGTGAGCTGGATGAGAAGG 59 868505 878475 CAATTCCTGCCGAAGATCTC 59 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 3 2 2 88 1 214414240 214414506 ATGTATGCCAGCATGTCTG 58 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 AABR07062535.1 ENSRNOG00000049935 ENSRNOT00000075453 1 1 1 80 4 181485221 181485240 GTATCATCTCAGCCATGGCT 60 181485010 181485178 CAGTAGCCATGGAGTAGCC 60 NA Rattus norvegicus 81 Wibg ENSRNOG00000058130 ENSRNOT00000092037 1 1 1 102 7 3173301 3173319 AGGCCAAGAAGTTACCTCG 59 3173385 3192578 CAATGTACTTGCCTGTGCC 60 NA InUTR Rattus norvegicus 81 Vom1r62 ENSRNOG00000032819 ENSRNOT00000044964 1 1 1 60 1 75326671 75326689 AGGGACGAATCAACTTCAC 58 75326710 75326731 CTACTTTGGCAGTATATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0647.1 ENSRNOG00000051094 ENSRNOT00000077067 1 1 1 60 X 63692070 63692089 CTTGACTTACGAGGCTTGGA 60 63692029 63692049 ACCACTTCCAATAACTCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 2 2 2 81 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958188 26958206 TCATTGATCTTCACGCCCA 59 NA Rattus norvegicus 81 LOC688828 ENSRNOG00000037305 ENSRNOT00000056435 3 1 1 81 8 113688281 113689064 CCATGGACTAGAGGTCTTGG 59 113688219 113688237 CAGAAATGCAGGTAGGCCT 60 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000073860,ENSRNOT00000074644 2 2 2 80 2 231876574 231876688 CACGGTATATGTGGAGTTGC 59 231876513 231876532 ACAACATTGCCACATTTCCC 60 NA Rattus norvegicus 81 Sh3bgrl ENSRNOG00000002280 ENSRNOT00000042827 1 1 1 83 X 80304029 80304047 GATGCCTTCTTTGAAGCCC 59 80304093 80309915 TTCTGCTTCCTTTGAACCAG 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 1 1 5 88 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80534709 80534949 TCTCTAGTGTAGAAGACTCCCA 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 3 1 5 60 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80534956 80543663 CTGACTCCTTTATTGTTCTAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Slc25a37 ENSRNOG00000015495 ENSRNOT00000021636 3 1 1 81 15 51129203 51131476 TAATGAATCCAGCAGAAGTGGT 60 51129143 51129161 GTCCGGATACAACTGAGGG 60 NA Rattus norvegicus 81 Smg6 ENSRNOG00000003041 ENSRNOT00000052412 2 1 2 80 10 61979762 61986555 CTGGAAGATGAGTACTATGAATTCC 59 61986590 61986611 GTCAATGCTTAGTACCATTTGC 58 NA Rattus norvegicus 81 Sowahb ENSRNOG00000002202 ENSRNOT00000002995 2 1 1 60 14 16492997 16493016 CTCTAGAACAGGGAGAACCA 58 16493039 16493057 GTCCTCATCAAGATGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 3 2 2 80 8 107898583 107898603 GAACAAGCCAGGCTTATTGAG 60 107902421 107903110 CACCTCTTGGACTTCCTCC 59 NA Rattus norvegicus 81 LOC100910041 ENSRNOG00000046311 ENSRNOT00000073833 1 1 1 60 8 42885703 42885721 GCACGATCATCCTGATCCT 59 42885744 42885763 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051190.1 ENSRNOG00000005062 ENSRNOT00000006710 3 1 1 85 3 261259 261278 GTAACCACAACGAATGCCAG 60 261326 261462 GAGGGATGACCATACGTGG 60 NA Rattus norvegicus 81 Ndufb7 ENSRNOG00000028717 ENSRNOT00000035890 2 1 1 81 19 24704982 24705000 ACAGCTTTCCCAACTTCGT 60 24705045 24705229 ATGCGCTTCACATAGTCCT 59 NA Rattus norvegicus 81 Olr365 ENSRNOG00000046596 ENSRNOT00000074432 2 1 1 60 1 230306667 230306688 GTGTCCATCTTCTTTGGTTCAC 60 230306709 230306727 TTGAGTGACTGGAACTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt7a ENSRNOG00000048782 ENSRNOT00000070832 1 1 1 129 4 123037976 123040297 CTATCTCCGGATCGGTGAC 59 123037865 123037883 TATGACGATGATGGCGTCC 60 NA Rattus norvegicus 81 Casp8ap2 ENSRNOG00000006487 ENSRNOT00000079656 3 1 1 80 5 47867460 47868152 GGACAGTACTGTTTCTGACAG 58 47868189 47868212 GTCAGGATCTCTTCATACAAATCC 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 1 2 5 80 15 10296383 10296401 AGGGCATACGATTTAGCTG 57 10293158 10296339 GCGAAATCCATTTACAGGC 58 NA Rattus norvegicus 81 LOC685391 ENSRNOG00000043170 ENSRNOT00000051812 3 1 1 140 4 82649498 82654713 GCACTAGTGATGTTCTTTCATACC 60 82649381 82649400 AGGCCTAGGGACTAGAAGAC 60 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 1 2 2 86 9 71265631 71269652 GCAGTATATTGCCATTACCCA 58 71269700 71269718 ATGGTTAATGTCTGCAGGC 58 NA Rattus norvegicus 81 LOC500124 ENSRNOG00000010594 ENSRNOT00000014331 1 1 1 80 4 80357076 80358966 GACTCTTTGTTACCCAAACCAC 60 80354370 80354393 CGTATGATAGGGATGTTCAATTGG 60 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 1 2 2 80 16 19913525 19913645 ACCCATTGATCCAGCTAGC 60 19913463 19913481 ACAGCAGGGTTGACTAGAG 59 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000081983 2 1 2 84 1 81080291 81080309 GAGCTTCAGTCAGAGTTCG 58 81080357 81098917 TTTGCCACACTCATCACAC 59 NA Rattus norvegicus 81 Prss3 ENSRNOG00000013382 ENSRNOT00000018042 2 1 1 80 4 69266241 69267289 TCACTGCTACAAATCCCGA 59 69266179 69266198 TCAATGAATTGCTCACCACC 59 NA Rattus norvegicus 81 Rn60_5_0814.33 ENSRNOG00000051052 ENSRNOT00000076229 2 1 1 81 5 77244026 77244045 GCAGAGAAACGTGTACAAGG 59 77243293 77243983 GGGATCTTGACTTCTGTCCT 59 NA Rattus norvegicus 81 LOC498152 ENSRNOG00000030354 ENSRNOT00000043992 3 1 1 83 12 17226322 17226340 GATCTCTTTCCAGACACGC 58 17226386 17231914 TCTACCAGCTCTTGTAGCTG 59 NA Rattus norvegicus 81 Mpzl3 ENSRNOG00000026753 ENSRNOT00000032837 2 1 1 80 8 49361043 49361063 CTTCAGATGTCACTGACAAGC 59 49361102 49365357 AATGGAAGATAGATTCTGTGCG 59 NA Rattus norvegicus 81 RGD1561276 ENSRNOG00000047700 ENSRNOT00000041791 1 1 1 60 3 102664933 102664952 AGACATCATGGTTATTGCGA 57 102664972 102664993 GATTAGCAGAACAAAGGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910252 ENSRNOG00000046635 ENSRNOT00000072493 1 1 1 80 1 221461697 221461715 CTTCAGGAAGCTCTGTACG 58 221461759 221461909 GTACAACAAGGTAGGCAGG 58 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 1 1 1 60 1 88457639 88461514 AAGAACATCGATCTGCGGA 59 88461535 88461556 TCATCCTGTGTCCTTATCTGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 3 2 2 80 X 128171449 128171468 ATCCTTCTCCATCACATTCC 57 128165703 128169965 GGTTAATGTAGAGCTTTGCTG 57 NA Rattus norvegicus 81 Stk32c ENSRNOG00000006962 ENSRNOT00000009178 3 1 1 80 1 211452069 211452957 ATCCACAGAGATGTCAAGC 57 211451920 211451938 GGTGGCAATGTTGAAATCG 58 NA Rattus norvegicus 81 RGD1306626 ENSRNOG00000008585 ENSRNOT00000011377 3 1 1 80 4 27617664 27617682 CCAGCGAACTACATTCTCC 58 27615267 27615370 TGCTTTGTAGAAGACGGAC 58 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000032303 ENSRNOT00000040261 1 1 1 60 1 219395505 219395525 TTTATGCCCGAGATGAAACTG 59 219395465 219395485 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35a ENSRNOG00000032303 ENSRNOT00000040261 3 1 1 60 1 219395516 219395536 AATTGAAGGTGTTTATGCCCG 60 219395476 219395494 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Matn3 ENSRNOG00000056141 ENSRNOT00000084212 2 1 1 80 6 34082548 34082567 AAATGGTTCTTACCACTGCG 59 34082610 34084359 CATTTGTCCTGAGCTGCAC 60 NA Rattus norvegicus 81 Ttyh1 ENSRNOG00000032699 ENSRNOT00000068459 3 1 1 82 1 73741506 73741524 CTAGCCAGCATCCACTCTC 60 73741023 73741461 GATAACAAGGGCTTCTGTGC 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 3 1 1 65 14 87701368 87701389 AGGAGAAGAGAATAAAGGAGCA 59 87701072 87701342 TTTCTGGTTGACAGGACTG 57 NA DesignNoJunction Rattus norvegicus 81 Cyb561 ENSRNOG00000007433 ENSRNOT00000009778 1 1 1 83 10 94138869 94139069 GCTGTTTAAACTTGGGAGCA 59 94138805 94138823 AAACAGATCAGCAGCAAGC 59 NA Rattus norvegicus 81 Ndufa4l2 ENSRNOG00000031851 ENSRNOT00000045083 2 1 1 94 7 70822378 70822396 AATGATCGGCTTCATCTGC 58 70822454 70823198 TCTTTCTGTCCCAGCAGAC 59 NA Rattus norvegicus 81 Ndufa4l2 ENSRNOG00000031851 ENSRNOT00000045083 3 1 1 95 7 70822377 70822396 CAATGATCGGCTTCATCTGC 60 70822454 70823198 TCTTTCTGTCCCAGCAGAC 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 1 3 3 131 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518941 150518959 GTCATAGCTTTCATGCCGG 59 NA Rattus norvegicus 81 Inhba ENSRNOG00000014320 ENSRNOT00000019272 3 1 1 148 17 51909783 51912375 ACCCGAAAGAGAATTTGCT 57 51909653 51909671 AAATCCTCTCAGCCAAAGC 58 NA InUTR Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000052369 1 1 4 81 14 22433566 22436175 GAATGACATCCTGGGTCAC 58 22436217 22436238 ATGATAGATTGCCTCATAGAGG 57 NA Rattus norvegicus 81 Colgalt1 ENSRNOG00000023317 ENSRNOT00000024866 1 1 1 80 16 20041832 20041852 TGAACATGTCATGAAACTGCG 60 20041890 20045042 CTGTCCACAAACAGAATGTAGTC 60 NA Rattus norvegicus 81 Nphs1 ENSRNOG00000020873 ENSRNOT00000045212 3 1 1 80 1 88923686 88923704 AGGAGTATGTGGTCACCTG 58 88923746 88924233 ATATAGTTCGTCCACTCTGGA 58 NA Rattus norvegicus 81 R3hcc1 ENSRNOG00000016777 ENSRNOT00000022706 1 1 1 80 15 51386071 51386090 TCCATCTTAGGCAGAAGCAG 60 51376388 51377016 GCGTGTTCTTGTCTTGTCTG 60 NA Rattus norvegicus 81 R3hcc1 ENSRNOG00000016777 ENSRNOT00000022706 2 1 1 80 15 51375361 51375379 CTCTTGAGCAGCTTCTCTG 58 51374556 51375319 TGAATTGGGTAACCTGATGTC 58 NA Rattus norvegicus 81 Smarcb1 ENSRNOG00000028302 ENSRNOT00000029458 3 1 1 80 20 13690934 13693957 CCTGGAACATGAATGAGAAGC 59 13693998 13694017 TCAGTGGATTCAAGTCCAGG 60 NA Rattus norvegicus 81 Entpd7 ENSRNOG00000045548 ENSRNOT00000023111 1 1 1 80 1 262994411 262994431 TACTGCACAGAGGATGTACTG 59 262994473 262997197 GCCACAGTAATCCTGAGCA 60 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 2 1 1 60 11 65960425 65960445 GTATCTGCTTCAGTACAACGA 58 65960467 65965177 AATCAAGGCAGGATCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Fam216b ENSRNOG00000021943 ENSRNOT00000038579 1 1 1 80 15 60287324 60287343 AGAATCAAAGTGTTCCACGA 58 60285578 60287284 GATTTAGGTCCTTCAGTAACGA 58 NA Rattus norvegicus 81 Popdc2 ENSRNOG00000058752 ENSRNOT00000087892 2 1 1 87 11 64940754 64940774 ATGGATTATAGGAGCGATGGG 59 64937332 64940706 TTCTAGAAGACAGGATCCGG 58 NA InUTR Rattus norvegicus 81 Tubb4a ENSRNOG00000047505 ENSRNOT00000075767 3 1 1 81 9 9962595 9966739 CTTTGTGTTTGGTCAATCTGG 58 9966781 9966800 GACTGCATCCACTAACTCTG 58 NA Rattus norvegicus 81 Tmem235 ENSRNOG00000048231 ENSRNOT00000074369 3 1 1 91 10 106869493 106869512 GTATATCCTGGAGGTGGCAG 60 106869566 106871546 TGTTCTGTCCTTCACAGGT 59 NA Rattus norvegicus 81 Rn60_5_0814.16 ENSRNOG00000051050 ENSRNOT00000076648 2 1 1 60 5 77798521 77798541 AAGAAGAGTGGTGGTCTTCAG 60 77798481 77798500 AGTCTGTGCAGACTACTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 3 2 2 81 2 188452441 188452461 TCAAGGAGATGATCAAAGCAG 58 188452503 188452663 ATGGATTCTGCATGGTACTC 58 NA Rattus norvegicus 81 Tfam ENSRNOG00000000613 ENSRNOT00000000753 1 1 1 123 20 18595147 18596700 AGCTAAACACCCAGATGCA 59 18597313 18597331 GTACACCTTCCACTCAGCT 59 NA Rattus norvegicus 81 Cybrd1 ENSRNOG00000009620 ENSRNOT00000012942 2 1 1 85 3 57730339 57742005 ATCCAACAGCTTGTTGTAGG 58 57742053 57742071 ACATGTATGGGCATGACGA 59 NA Rattus norvegicus 81 Mir224 ENSRNOG00000060270 ENSRNOT00000088901 3 1 1 60 X 152223798 152223817 TGGTTCCGTTTAGTAGATGG 57 152223757 152223776 CTTTGTAGTCACTAGGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332,ENSRNOT00000001333 1 2 2 80 12 2235559 2239003 ATACTGATGTCAAAGGGAACG 58 2235499 2235519 ACCGAAATAGTAGCACTTCTG 58 NA Rattus norvegicus 81 Il10 ENSRNOG00000004647 ENSRNOT00000006246 2 1 1 86 13 47740985 47741003 ATGGCCCAGAAATCAAGGA 59 47741053 47742068 GAAATCGATGACAGCGTCG 60 NA Rattus norvegicus 81 Ddt ENSRNOG00000001239 ENSRNOT00000001664 1 1 1 80 20 13827803 13829381 ACCAGGACAGGATCATTATCC 59 13829420 13829441 ACAGAAACGTCATAACAGTTCC 59 NA Rattus norvegicus 81 Ddt ENSRNOG00000001239 ENSRNOT00000001664 2 1 1 107 20 13827714 13827732 CTCTTCCATCGGTGTTGTG 59 13827801 13829379 ATAATGATCCTGTCCTGGTCC 59 NA Rattus norvegicus 81 Tspy26 ENSRNOG00000026770 ENSRNOT00000036956 1 1 1 60 3 148706334 148706352 AACCACCCACAGCTATCAG 59 148706292 148706310 TCAGGTAGCCAAGCATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgkh ENSRNOG00000010065 ENSRNOT00000058079 1 1 1 80 15 60821707 60821727 ATAGCAGTGTTGAACATCCCA 60 60820057 60821666 AGCAGCAAATATGTCGTCCT 60 NA Rattus norvegicus 81 Dgkh ENSRNOG00000010065 ENSRNOT00000058079 2 1 1 80 15 60821707 60821726 TAGCAGTGTTGAACATCCCA 59 60820056 60821665 GAGCAGCAAATATGTCGTCC 60 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000046431 ENSRNOT00000071085 3 1 1 80 8 3860992 3861011 AAAGAAGGCATAGTTGCCTG 59 3839937 3860953 CTGATCCATATCTGTCTCATTGG 59 NA Rattus norvegicus 81 Ap3s1 ENSRNOG00000003829 ENSRNOT00000064116 1 1 1 80 18 40732638 40755228 AGCCCTATAGTGAAGATACGC 59 40755269 40755288 TACAAACATTCTCGTCTCGC 58 NA Rattus norvegicus 81 Khdrbs3 ENSRNOG00000009539 ENSRNOT00000012753 1 1 1 80 7 110121081 110142561 CTATGGAGAGTATGACTATGACGA 59 110142598 110142618 CTGTAGCTGTTGTCATAGGAG 58 NA Rattus norvegicus 81 Cd300e ENSRNOG00000036726 ENSRNOT00000029092 3 1 1 80 10 103601173 103602284 TCCAACTATGGTCTCTGCT 58 103601111 103601129 AGAGCATGCTCAGAAACAG 58 NA Rattus norvegicus 81 Rhbdl2 ENSRNOG00000026592 ENSRNOT00000034839 1 1 1 115 5 141500690 141500708 GTCTATGCCTTGATGGGTG 58 141502329 141504331 ATGTCTGAGGCAACTATCAG 57 NA Rattus norvegicus 81 LOC100909935 ENSRNOG00000032077 ENSRNOT00000044773 2 1 1 60 1 149914435 149914454 GGATTCCACACTACAGACAC 58 149914394 149914412 GATCTCCAGGAATGACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd209e ENSRNOG00000028803 ENSRNOT00000031997 3 1 1 84 12 2386784 2386804 GAAGAAGTTCAGTGGGAACAG 59 2386308 2386740 GGCAGAGGCTATCAATTTCAG 59 NA Rattus norvegicus 81 Ttc1 ENSRNOG00000003980 ENSRNOT00000005304 1 1 1 80 10 29357398 29357416 AAATAGAGCTGCTGCAAGG 58 29350672 29351449 GGATTTAACTGAATGGCTTTGC 59 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 3 2 2 83 10 43542892 43544541 TACATCGCCATGGACACAG 60 43544583 43544606 CTGATACTGGTAATCTATGGAGCT 60 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000077882 3 1 2 80 10 103543912 103544385 GGTTCCTTTGAGGTTTAGGG 58 103546104 103546122 TCATGACTTCTCACCTCCT 57 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000066523 1 1 2 81 10 103545484 103546091 AACCTTCAGCCAGATCCAG 59 103546135 103546154 CATATTGGCACTGCACTGTC 60 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 2 3 4 82 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820457 37820475 ACAGCATTGATGGCTTCCT 60 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075884 2 1 4 82 15 37825095 37825113 AAGCAAACCATCAACCCAG 59 37822839 37825054 CTTGTATGTGGTAGGTTTATCCAG 59 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433,ENSRNOT00000071977 2 2 2 80 6 42603330 42603348 GTCAGCAAGGAAGACTTCG 59 42602749 42603288 CTGTACATAGCTTGACTTGGG 59 NA Rattus norvegicus 81 Olr190 ENSRNOG00000017357 ENSRNOT00000023307 3 1 1 60 1 169966778 169966798 ACAGTCAACCGTCTTTATCAG 58 169966818 169966838 GAATTAGGTCAGATCCCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0792.1 ENSRNOG00000031296 ENSRNOT00000042870 2 1 1 60 14 79113509 79113530 CAAGAAGATCAAGTCCCTAGAG 58 79113548 79113569 CTCAGATCTTATAATGGGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem139 ENSRNOG00000028024 ENSRNOT00000033775 3 1 1 83 4 71650812 71651050 AATGCACAGGTCAATGAAGC 60 71651095 71651114 GAGATGGTGCTGTGATTGTG 59 NA Rattus norvegicus 81 Pdk2 ENSRNOG00000004172 ENSRNOT00000005641 1 1 1 80 10 82850699 82850719 GAAAGAGATCAACCTGCTTCC 59 82844005 82850657 AGACTCTGGACATACCAGC 59 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308,ENSRNOT00000091545 2 3 3 80 2 113779450 113779468 CACAGACTCACAGATGTGG 58 113779512 113780684 CTCTACTGATGCTGCTGTG 58 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000066362 3 1 2 104 14 84233115 84244974 GGAATCATCAGTGGTTTCCT 58 84245038 84245059 GCAATAGGAAACTGGTTAAGAG 57 NA Rattus norvegicus 81 Nol4l ENSRNOG00000010417 ENSRNOT00000013881 2 1 1 80 3 148915248 148915267 ATGACCATGAGGACAATGAC 58 148915107 148915205 GCACGAACATATTGAAGGC 58 NA Rattus norvegicus 81 Enpep ENSRNOG00000051854 ENSRNOT00000087062 2 1 1 80 2 233732601 233732620 GGCGACTTACAACATATCCC 59 233730700 233732561 AGTGTCTCTTCCTTCTCTACTG 59 NA Rattus norvegicus 81 Lipm ENSRNOG00000019301 ENSRNOT00000026219 2 1 1 80 1 252415474 252418227 TTGAAGAAGGAAGGATCCAGG 60 252418268 252418287 CAGGTTGGAAATCCAGTTGC 60 NA Rattus norvegicus 81 Cd33 ENSRNOG00000037331 ENSRNOT00000047473 3 1 1 80 1 98398686 98398774 GCTGTGTACAGACTCCCTG 60 98398818 98398836 CACAAGGCCTCCTCTACTG 60 NA Rattus norvegicus 81 Krt83 ENSRNOG00000032859 ENSRNOT00000031257 1 1 1 80 7 143081927 143082655 CCTGAAGAAGGATGTGGAC 58 143081865 143081883 TCGATCTCCTGTGTCAGAG 58 NA Rattus norvegicus 81 Esrrg ENSRNOG00000002593 ENSRNOT00000003489 2 1 1 80 13 106617938 106666803 CATATCCCAGGCTTCTCCA 59 106666845 106666865 CAGGATCAAGATTTCCATCCA 58 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071,ENSRNOT00000017042 3 2 2 80 10 64745063 64745081 TAATCCAAGGAGGGTTGCA 59 64745124 64749380 TCACCGCAATCCTATTTGGA 60 NA Rattus norvegicus 81 Grwd1 ENSRNOG00000021058 ENSRNOT00000056181 1 1 1 81 1 101818161 101818179 ATGAAGAGGAGCGGAAACC 60 101816045 101818116 AGCCAAGATACCCGAACTC 59 NA Rattus norvegicus 81 Samt3 ENSRNOG00000029010 ENSRNOT00000040231 2 1 1 80 X 54554461 54555957 ATATACAAAGGTTTGCTGTGGC 60 54555995 54556016 CAAACACCAAAGCTATTAGGCT 59 NA Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 3 2 2 143 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529856 50529874 GGCATTAACGAGTTCCTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RT1-M10-2-ps ENSRNOG00000054348 ENSRNOT00000082861 2 1 1 80 20 2460562 2460900 ATTGGGAGAAGGAGACACC 59 2460944 2460962 CGGTAATTACCTCGGAGGA 58 NA Rattus norvegicus 81 RGD1310587 ENSRNOG00000002322 ENSRNOT00000003177 3 1 1 60 13 102783263 102790318 AAGTACGGCAAGAATGTCG 58 102783221 102783239 GGCCAATGACAATGTACCG 59 NA DesignRelaxed Rattus norvegicus 81 Ap2a1 ENSRNOG00000026243 ENSRNOT00000020304 3 1 1 80 1 100913822 100913841 TTGACTTTGGACACATGGAG 58 100913603 100913782 AGATGAACAGGTACCCTATCTG 59 NA Rattus norvegicus 81 Rn60_X_0649.2 ENSRNOG00000051212 ENSRNOT00000076836 1 1 1 60 X 63984129 63984149 CAACTTTGAGCACTACTTCGG 60 63984089 63984108 AGCATCACTCTTTAGTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nufip2 ENSRNOG00000024964 ENSRNOT00000030501 3 1 1 187 10 65199981 65200001 TATTTCTACAACCACAGCCAC 58 65195156 65199835 CCATTTATTTCACCATAGCCTG 58 NA Rattus norvegicus 81 Lyzl1 ENSRNOG00000016295 ENSRNOT00000021901 1 1 1 80 17 56255942 56256656 GATGAACTATTGGCAGGGC 59 56255880 56255898 CAGGAAACATCGCATCCTC 59 NA Rattus norvegicus 81 Fbxo40 ENSRNOG00000002459 ENSRNOT00000003340 2 1 1 80 11 66728250 66728268 ATGGTCCTCTTGCAATGGA 59 66728310 66730649 GAACTGCCAGATCTGATTGTG 59 NA Rattus norvegicus 81 Ptp4a3 ENSRNOG00000007628 ENSRNOT00000010224 3 1 1 87 7 115001764 115002474 CAGTTCATCCGACAGAAGC 59 115002524 115002543 ATCTCAGTCTCTGCTTAGGC 59 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817,ENSRNOT00000030760 1 2 2 80 10 39679277 39680000 ACATCATCAATACAGCGGAC 58 39680043 39680061 TCTCCACGTGTTCTAGCAG 59 NA Rattus norvegicus 81 Sox18 ENSRNOG00000016248 ENSRNOT00000021790 1 1 1 140 3 177178615 177178633 AATCCGGATCTCCACAACG 60 177178309 177178327 CTTGTAGTTGGGATGGTCG 58 NA DesignNoJunction Rattus norvegicus 81 Txnip ENSRNOG00000021201 ENSRNOT00000028793 1 1 1 80 2 198684857 198684875 TCCGAGTGCAGAAGATCAG 59 198684915 198685031 CACTAACATAGATCAGCAAGGAG 59 NA Rattus norvegicus 81 Mxd1 ENSRNOG00000017720 ENSRNOT00000023856 2 1 1 80 4 118471592 118471612 CATACAGTAGCAAGGACAGAG 58 118466094 118471551 TGTGAGTTGATCTGCTACTG 57 NA Rattus norvegicus 81 Ckap5 ENSRNOG00000016067 ENSRNOT00000021837 1 1 1 80 3 80518868 80521207 GCTTGTTATGAAGTGTCTATGG 57 80521248 80521266 AGAAGGATTCGGTCTAGGT 57 NA Rattus norvegicus 81 Anks1b ENSRNOG00000024870 ENSRNOT00000059269 3 1 1 80 7 30714795 30727488 GCTGTCAAACAGAGAAGGG 59 30727531 30727550 TTTCTAACAGAACTCGCACC 58 NA Rattus norvegicus 81 Lmln ENSRNOG00000001781 ENSRNOT00000002427 3 1 1 80 11 70918889 70918910 GAATTCAGCTGGCATTTAAGTG 59 70916575 70918849 CTTAAACAGCTCTGGTTGGT 58 NA Rattus norvegicus 81 Cdh13 ENSRNOG00000014371 ENSRNOT00000019298 1 1 1 80 19 51842848 51885449 CAAGAAAGAGTTTCAAGCCAC 58 51885490 51885509 GGGTCATCTTTGTCTTCCAC 59 NA Rattus norvegicus 81 Gnat3 ENSRNOG00000005268 ENSRNOT00000007032 2 1 1 80 4 13877946 13877966 CAAAGAACTGGAGAAGAAGCT 58 13860891 13877904 TCACCTGCTCCTAATAGCA 58 NA Rattus norvegicus 81 RT1-M1-2 ENSRNOG00000031065 ENSRNOT00000038820 1 1 1 80 20 2409391 2409675 CCTAACAGCACGACTAATCAC 59 2409331 2409352 GATTCCATGACTGAAGTAACCT 58 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560,ENSRNOT00000058906 3 2 2 80 5 88600129 88601618 CTCAGGAACATCAACAACAGG 59 88600069 88600089 CGATGATGGCATTCAACTCTG 60 NA Rattus norvegicus 81 Oscp1 ENSRNOG00000026978 ENSRNOT00000037246 2 1 1 80 5 144085718 144086201 AGCTGACAGAAATCTACGGG 60 144086241 144086262 GGTCTTGGAAGAAGATAAGCAG 59 NA Rattus norvegicus 81 Rn60_2_0094.1 ENSRNOG00000051037 ENSRNOT00000076041 2 1 1 60 2 9496743 9496762 AGGTCAAATTGTGTCTTCCA 57 9496785 9496803 ATCAACATTCAGGGCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr2i ENSRNOG00000050560 ENSRNOT00000073107 2 1 1 86 1 91042083 91042181 GCCAGGAATGTAATAACATGCT 59 91041804 91041822 GCTGGTAATCGCAATTCCG 60 NA Rattus norvegicus 81 RGD1564887 ENSRNOG00000025523 ENSRNOT00000054703 2 1 1 80 1 265729090 265733162 GTGCATGAAGAACTTGATGG 58 265729029 265729050 TTCAGACATAGACTCTTCAGAC 57 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805,ENSRNOT00000079607 3 2 2 80 17 56969866 56969888 GCTGATTTACAGTATGGCTATGG 60 56968503 56969828 CCACATATCCAATGCTAGCTC 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 2 2 2 80 5 169400329 169406759 TGCCTCCTATTGTGTATTTACG 58 169406800 169406818 CCATGCGTTCTAGCTTCTG 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321,ENSRNOT00000085022 1 2 2 80 8 49250155 49250173 GCTACAATCTGGTGACCGA 60 49248015 49250112 CCATCTGATCATGCAACCTG 59 NA Rattus norvegicus 81 LOC100910698 ENSRNOG00000037698 ENSRNOT00000045591 3 1 1 80 X 105938375 105938395 AACACCTTAAGGAACTCAGCT 59 105938434 105939363 AACCAGGTGGTAAGATTCTGAG 60 NA Rattus norvegicus 81 Srsf12 ENSRNOG00000051383 ENSRNOT00000091482 2 1 1 80 5 48474664 48474682 CAGAGGAGATCTCGAAGCC 59 48474724 48483720 TGAGGTAGACTGCTCTTTCAG 59 NA Rattus norvegicus 81 Gprasp1 ENSRNOG00000049985 ENSRNOT00000073661 2 1 1 80 X 106307712 106307730 CCACAGGTCTGCTTTAAGG 58 106307773 106308481 CAACCTCCAAGATCTGAGAC 58 NA InUTR Rattus norvegicus 81 Olr1052 ENSRNOG00000033400 ENSRNOT00000049493 3 1 1 60 7 16432318 16432337 CAGTAACAAGATCTGCCACC 59 16432277 16432297 AATTACCAAGAAACCAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H6pd ENSRNOG00000017523 ENSRNOT00000023543 2 1 1 97 5 167003390 167003409 CAGTACCAGGCCTATAGTGG 59 167002289 167003330 ATGTGGACAAGGACACCTG 60 NA Rattus norvegicus 81 Mad1l1 ENSRNOG00000001265 ENSRNOT00000001709 3 1 1 80 12 16430250 16432371 GGAGCAGAAGATTAAGGACC 58 16432412 16432432 TCAGATTTCATGCTCTTCACC 58 NA Rattus norvegicus 81 MGC116202 ENSRNOG00000015625 ENSRNOT00000020927 3 1 1 80 19 37240242 37240260 ACCAAGTGCCAAATTTGGT 59 37239921 37240200 ACTCAGTTGTACAACAACCTC 58 NA Rattus norvegicus 81 RGD1562011 ENSRNOG00000061525 ENSRNOT00000049057 1 1 1 60 1 216942220 216942242 TTTCTCTTAGTCTCGGAGAACTG 60 216942182 216942200 CCAACTTGCAGAACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2c ENSRNOG00000020700 ENSRNOT00000028097 1 1 1 80 1 220967083 220967101 GAAGCTGAACTTCTCAGGG 58 220967145 220967238 ATAAAGCGGTCAAAGTCCC 58 NA Rattus norvegicus 81 RGD1565158 ENSRNOG00000040121 ENSRNOT00000061709 1 1 1 80 10 1834761 1837691 AGGAGGAACAGGACTTCAC 59 1837733 1837753 GCAGTTGCTCTTGATTAACAG 58 NA Rattus norvegicus 81 Hsf4 ENSRNOG00000015253 ENSRNOT00000065013 3 1 1 80 19 37231028 37231160 TGGAGTTGTCTCTGATGCA 59 37231203 37231222 CACCTGAAGAAGTCAAGTCC 58 NA Rattus norvegicus 81 Olr1160 ENSRNOG00000049729 ENSRNOT00000050608 3 1 1 60 8 19995044 19995064 TTTGTCACCCTCTACACTACC 59 19995083 19995104 ATGAGCAAACATCTACACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn4 ENSRNOG00000002625 ENSRNOT00000003568 1 1 1 80 13 35773573 35783194 CAGCATATTGGCTTATCTCCT 58 35773513 35773533 TTCAACTCCATAGAGTTCCAG 57 NA Rattus norvegicus 81 Olr304 ENSRNOG00000049502 ENSRNOT00000041953 1 1 1 60 1 213131837 213131856 GACATTATCTGCACCTCCTC 58 213131878 213131897 TTTCCTCAGACAGTAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1145 ENSRNOG00000050124 ENSRNOT00000051572 2 1 1 60 8 19386212 19386230 ACTCTCACCTCCACATTCC 59 19386170 19386190 CAGATATCAGTGAAGGACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Steap2 ENSRNOG00000006076 ENSRNOT00000007977 2 1 1 80 4 25521819 25523179 CTTATCAGCAGGTTCATGCG 60 25523220 25523240 CGAAGGAGATGTACATCTCGA 59 NA Rattus norvegicus 81 LOC683549 ENSRNOG00000022136 ENSRNOT00000033595 2 1 1 80 11 60152316 60152335 TCGTGCTCAAGATTCCAGAG 60 60152377 60159040 TATACATGTCCGTGAGCCTC 59 NA Rattus norvegicus 81 Tmem163 ENSRNOG00000003769 ENSRNOT00000005006 1 1 1 80 13 44176256 44193918 CCTGAAGTGGACGATTTCCT 60 44176195 44176214 CATGAACTTCAACACAGCCA 59 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189,ENSRNOT00000036205 3 2 2 90 10 11811162 11822697 GATGGTGGTCCAGGTACAG 60 11822755 11822773 CTCTGTCTGTCCACACCTC 59 NA Rattus norvegicus 81 AABR07010747.1 ENSRNOG00000050241 ENSRNOT00000075623 3 1 1 81 2 150014524 150022111 CTCAACTGCTACAGAATGATCC 59 150022153 150022171 TCAAGTGACTGTAGGCCTG 59 NA Rattus norvegicus 81 Stxbp5l ENSRNOG00000002496 ENSRNOT00000041715 1 1 1 80 11 66546240 66549892 CATGATAATGAGCTTACCTAGCC 59 66549931 66549950 GTCCGTGCTATTCTCATGTC 59 NA Rattus norvegicus 81 Disp1 ENSRNOG00000003635 ENSRNOT00000004834 3 1 1 88 13 101463758 101463777 TCAGGCGATCATCATGAGAG 60 101461346 101463707 TAGCCATCACTTGGAACGT 59 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000049059 ENSRNOT00000072914 2 1 1 82 1 82934193 82935519 CTGCTCAGATATGCTGACCT 59 82935563 82935582 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000088687 3 1 2 83 6 39362126 39363158 GAAATCACGGATCTCAGTTCC 59 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA InUTR Rattus norvegicus 81 Kmt2a ENSRNOG00000015133 ENSRNOT00000020573 2 1 1 80 8 49146619 49147094 GAGTGGACTTTAAGGAAGACTG 59 49146560 49146579 TTATGGGAACAGAGGTCAGG 59 NA Rattus norvegicus 81 AABR07051746.1 ENSRNOG00000047162 ENSRNOT00000072306 1 1 1 60 3 20695883 20695902 AATTGTCACCATCACATGCC 59 20695842 20695865 CTGATACCATGCTAACCAATTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epc1 ENSRNOG00000014834 ENSRNOT00000019968 2 1 1 80 17 57308227 57308248 CTGATGGGATTCAAGATGAAGG 59 57308067 57308187 CTTGTATACTCCTGAGGCGG 60 NA Rattus norvegicus 81 Tmem261 ENSRNOG00000023946 ENSRNOT00000031852 1 1 1 93 5 92038918 92038936 GTCTACTTTGTTGCCAGGC 59 92038618 92038861 AACAGGCAATACTGATGCC 58 NA Rattus norvegicus 81 Tmem261 ENSRNOG00000023946 ENSRNOT00000031852 3 1 1 94 5 92038918 92038936 GTCTACTTTGTTGCCAGGC 59 92038617 92038861 CAACAGGCAATACTGATGCC 60 NA Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000090815 2 1 2 81 4 117583564 117584158 CTATGTTCTGGAGGCATCAC 58 117583502 117583521 ACTTGCATCAGTATCCAGTC 57 NA Rattus norvegicus 81 Fn3krp ENSRNOG00000036660 ENSRNOT00000054916 1 1 1 81 10 110621352 110621370 CCAGATGGACATGGTGGAG 60 110621413 110621679 GTCAGGAATCTTCAACTGCAG 59 NA Rattus norvegicus 81 Nat8b ENSRNOG00000015851 ENSRNOT00000021243 3 1 1 95 4 117606862 117607321 TTGTGTAGTAGCGGGACTC 59 117606785 117606805 CGCAGATGTGATAAGAAACCA 59 NA InUTR Rattus norvegicus 81 Vom2r59 ENSRNOG00000045674 ENSRNOT00000042692 2 1 1 95 12 4004148 4019986 ATTACAGAGACTCCCAGGT 57 4020044 4020063 GCAGTCAAAGCAACATATCC 58 NA Rattus norvegicus 81 Hcls1 ENSRNOG00000038881 ENSRNOT00000003326 1 1 1 80 11 66737583 66737789 TTATGATTACCAAGGAGAGGGA 58 66737524 66737545 TCATCAACCATCTCAATGTCAG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084787 2 1 11 80 6 99067064 99067084 GAAGATGGCTTTACAACAGTC 57 99067125 99068599 GTATGCACATCTGCTTTCTG 57 NA Rattus norvegicus 81 Olr309 ENSRNOG00000047518 ENSRNOT00000073278 2 1 1 60 1 213335556 213335577 ATAGCAGATGCCATTTATGGAG 59 213335598 213335616 TGCAGCCATAGGATAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299,ENSRNOT00000012095 1 3 3 82 13 52631874 52631892 AGAAGGTGCGTTACCTCTC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 2 3 3 80 7 141065931 141065949 TGATCTTCACCTGCTTCAG 57 141065992 141066207 CTGACATCAAGATACCTCCC 57 NA Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 2 1 1 87 15 62521316 62521334 CCTGTGAAGGCTCAATTCC 59 62521385 62531561 CAACCTCCATGAAACGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Poglut1 ENSRNOG00000003014 ENSRNOT00000051428 2 1 1 80 11 64765108 64765128 ATCAATGTCCGAGACTATCCT 58 64765169 64767818 CTCCGATGTCTTACTGAAGG 58 NA Rattus norvegicus 81 Olr1392 ENSRNOG00000046072 ENSRNOT00000051001 2 1 1 60 10 34645498 34645518 AACTCTTCCATCATTGCTCTC 58 34645537 34645558 AGAAGTACATTGGTGTTTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183,ENSRNOT00000049391 2 2 2 80 17 63838747 63838767 AGAAGCATTCTAACAAGCAGG 59 63838185 63838705 TAAGGTCTATAGCCCGCTC 58 NA Rattus norvegicus 81 Dkk2 ENSRNOG00000011360 ENSRNOT00000015116 2 1 1 80 2 237236431 237236451 TCACTATTCCAACCATGACCT 59 237236489 237239078 CCTTCATGTCCCTTTATATGAGG 59 NA Rattus norvegicus 81 Nlrp1b ENSRNOG00000048125 ENSRNOT00000075185 3 1 1 60 10 57837163 57837181 TCAGACAGATCCTGTCTCG 58 57837121 57837139 GGCTCATCTATGCCATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ywhaq ENSRNOG00000051650 ENSRNOT00000077786 2 1 1 80 6 43493121 43493139 AAGTTGCAGCTGATCAAGG 59 43471410 43493077 CAACAATTCCAGGACCGTG 59 NA Rattus norvegicus 81 Igfals ENSRNOG00000015061 ENSRNOT00000020233 2 1 1 161 10 14240397 14240415 GTACAAGGAACAATGGCCC 59 14241656 14241674 ATCATGGCTGCAGGTACAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405,ENSRNOT00000065112,ENSRNOT00000081971 3 3 3 80 5 117606774 117606795 GAACAGGAGTTTGTTTACAAGG 58 117605608 117606735 TTCTCCATAGAATCCCTCCAG 59 NA Rattus norvegicus 81 Zfp691 ENSRNOG00000007398 ENSRNOT00000009691 1 1 1 60 5 138218713 138218731 TGTACATCACCGAACCCAC 60 138218671 138218689 GCTCTTTCCACACTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 1 1 1 60 5 77605864 77605885 GATACAAAGCTAGAGAACTGCA 58 77605097 77605844 GTCTGGGATCTTGATTTCCT 57 NA DesignNoJunction Rattus norvegicus 81 Olr1425 ENSRNOG00000052623 ENSRNOT00000047242 3 1 1 60 10 44157096 44157114 ATTTCTGTCACTGTGCCCA 60 44157054 44157072 CTGAGATCCTGTGGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Get4 ENSRNOG00000001293 ENSRNOT00000001745 3 1 1 80 12 17476693 17485894 TTCTTCAGGTACATGTCTCAG 57 17476633 17476652 ATGACTGAAGAAGAGCAGTG 58 NA Rattus norvegicus 81 Reep4 ENSRNOG00000011373 ENSRNOT00000015169 1 1 1 80 15 52237905 52238014 CCATTAGTTCGAGAGGGCA 59 52238058 52238076 CTAGCTGTCCAGGTCAGAG 59 NA Rattus norvegicus 81 A3galt2 ENSRNOG00000005935 ENSRNOT00000007851 3 1 1 99 5 146940271 146940290 CCAAGAAGAGACTCCTGTGG 60 146940350 146940528 ATGAACACTTCAAAGAGCCTG 59 NA Rattus norvegicus 81 Tmem126b ENSRNOG00000022732 ENSRNOT00000038279 1 1 1 80 1 156267280 156267298 CTTCCATTTGTGGCTACCG 59 156267338 156267696 GCTTTCCTGGCTTATATTACCTG 59 NA Rattus norvegicus 81 Gtpbp10 ENSRNOG00000007098 ENSRNOT00000009340 2 1 1 80 4 25639750 25644101 CCTAGTAGGATTCCCAAATGC 58 25644142 25644161 GCATAACTTGCAATCACAGG 58 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 2 1 1 88 1 221538210 221540485 AGACCTCGAGGAGTCTCAG 60 221540537 221540555 CCTTACTGGTGTGCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Hormad1 ENSRNOG00000021160 ENSRNOT00000066821 3 1 1 86 2 197684734 197684755 GTTTCAGTATCCTGCATTACCT 58 197684800 197688270 TTTGACACAGAGATCATCCAG 58 NA Rattus norvegicus 81 Rab19 ENSRNOG00000009030 ENSRNOT00000012280 3 1 1 85 4 67174020 67174038 ATTCGAGTCTGTCCCTCAC 59 67174086 67175294 CTGATTTGTTCCCGATCAGC 59 NA Rattus norvegicus 81 Tshr ENSRNOG00000003972 ENSRNOT00000005671 2 1 1 80 6 115254810 115254828 GAGACTCACCTGAAGACCA 58 115254867 115258398 GGCATCTATGGATAGATAGATCCT 59 NA Rattus norvegicus 81 Wdr53 ENSRNOG00000001754 ENSRNOT00000002392 2 1 1 80 11 71788067 71791781 GATATGCAGGTAATGCTGTGG 59 71788007 71788027 TTCCTCTGTTTCATCCTCCTG 60 NA Rattus norvegicus 81 Adra2b ENSRNOG00000013887 ENSRNOT00000018584 2 1 1 60 3 119806504 119806523 GTGGCTACTCTCATCATCCC 60 119806546 119806564 AGAAGTACCAGTAGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000024434 2 1 2 83 16 19996454 19996472 CTACAGAGGAGCAACAGGA 58 19993310 19996408 CTCTCCTCAGGTCATCATGG 59 NA DesignNoJunction Rattus norvegicus 81 Syn3 ENSRNOG00000026866 ENSRNOT00000037918 2 1 1 80 7 23794360 23798651 TATCATTGAGGTCATGGACAG 57 23798692 23798711 ACAAGGTCAGCCATTAACTG 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 1 2 2 80 13 98446634 98446652 AAGGCTCTTTGTCATCAGG 57 98446695 98447060 GAGAATCAGAGTCCTCTCCA 58 NA Rattus norvegicus 81 Rnf168 ENSRNOG00000043345 ENSRNOT00000002395 1 1 1 80 11 71736026 71736045 GAAGACGAAGTGAGATGGAG 58 71732395 71735984 AGTTACTGTTGATGCTGGTG 58 NA Rattus norvegicus 81 Crybb3 ENSRNOG00000047673 ENSRNOT00000071328 1 1 1 122 12 49565996 49566014 TTCTCCTCCAGTTTGAGGC 59 49566100 49566750 TACACCGTCACCTTGTAGC 59 NA InUTR Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242,ENSRNOT00000009552 2 2 2 80 3 92916946 92918781 GTTACTCTTAAGCAAATGCCTG 58 92916887 92916905 TGAAATGTCAACAGAGGGC 58 NA Rattus norvegicus 81 AABR07016950.1 ENSRNOG00000049843 ENSRNOT00000040447 3 1 1 81 15 5486386 5486486 ACTTCTGTTTAGAAAGGCATCG 59 5486326 5486345 TTTGATGTTCTCCAAACGCT 59 NA Rattus norvegicus 81 Tmem178b ENSRNOG00000047635 ENSRNOT00000073638 2 1 1 86 4 68012062 68049817 TCATGGGAGGAACCTTCTG 59 68049867 68049885 ATAGGTAGCGTGGGTAACG 59 NA Rattus norvegicus 81 Ndst4 ENSRNOG00000009577 ENSRNOT00000012773 2 1 1 80 2 229328881 229328899 CCACCTGTTCCACAATGAG 59 229328942 229370331 ATCGGAATTCCATGTTCCAG 58 NA Rattus norvegicus 81 Hsd17b2 ENSRNOG00000013982 ENSRNOT00000018795 1 1 1 80 19 50289486 50299008 CAAGACAAAGGACTGTGGG 58 50299052 50299070 GGTCATGGGAATGAGTTCC 58 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396,ENSRNOT00000081290 3 2 2 80 17 52365971 52366698 GAGTCTTCACAGAGCAAACC 59 52365910 52365931 GATCTTGGACCGCTTATTATGC 60 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 3 3 4 108 5 78369877 78369895 AGAGTTTGCCATGTTGTGG 59 78368992 78369806 GATGATAATGTCAGCACCGG 59 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 3 1 4 130 5 78373879 78378415 TAGCAGTCTGCGGAAAGAG 60 78373767 78373785 GTGAAAGTAGCCACTGTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 1 2 2 80 1 199688193 199688212 CTGAAGAGTTAGAGGGTCCA 58 199688255 199688358 ACTGGACCTCTTCAATCCC 59 NA Rattus norvegicus 81 Hbp1 ENSRNOG00000008927 ENSRNOT00000012004 3 1 1 80 6 51240965 51241597 CTCACAAGGGCTATGGGTC 60 51240903 51240922 ACTTCAGTACAGACTCACCG 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323,ENSRNOT00000040701 1 2 2 80 2 60956368 60960584 TGCTGCTTAAAGGACTTGG 58 60960628 60960646 TCTTCTTCACTTCTGGCCA 59 NA Rattus norvegicus 81 Uba52 ENSRNOG00000019974 ENSRNOT00000027073 1 1 1 80 16 20670003 20670022 CAGAGACTGATCTTTGCTGG 58 20670065 20670873 CAAGGTGGACTCTTTCTGG 58 NA Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 3 2 2 80 13 98055841 98055862 CAGCTTATCTGTCAGTATGCAC 59 98054863 98055804 CAGAGTATCATCTAAGCCTTCAG 58 NA Rattus norvegicus 81 Zfp394 ENSRNOG00000000983 ENSRNOT00000001302 1 1 1 107 12 11182875 11182893 CTCTGACCTGGGAAGAGTG 59 11182964 11185618 CTTTGGTTTCCAAGCCAGG 59 NA Rattus norvegicus 81 Tph1 ENSRNOG00000011672 ENSRNOT00000056109 3 1 1 80 1 102676415 102676433 CTCCCAAGAAATTGGCCTG 59 102674756 102676372 ACAGTGAAGAAGTAGCACGT 59 NA Rattus norvegicus 81 Gstt3 ENSRNOG00000001242 ENSRNOT00000036518 2 1 1 85 20 13822762 13822780 TCGTGTGGATGAGTACCTG 59 13822829 13824510 ACTGACAGGTCACCTTCTG 59 NA Rattus norvegicus 81 Mrpl55 ENSRNOG00000002943 ENSRNOT00000003931 2 1 1 161 10 45552944 45554175 ATGATAAGGGCCTACATCAGG 59 45554582 45554600 AGCTCTCCAAGGAGATGTG 59 NA InUTR Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 3 2 2 81 1 101071399 101071499 CCAACACAGATGGTGAACAG 59 101071543 101071561 ATCCAGAAGCTGGGTAGTG 59 NA Rattus norvegicus 81 Olr337 ENSRNOG00000021074 ENSRNOT00000028608 3 1 1 60 1 228684960 228684979 CTGATGTCCTTGTCTTGCTC 59 228685002 228685020 ACACAACCAGGAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myom3 ENSRNOG00000032994 ENSRNOT00000044969 3 1 1 80 5 154115280 154120815 AGGTCACCTGGTACAAGGA 60 154120858 154120877 CGTAGTTGTTGGTGATTCGG 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000087370 2 1 3 74 7 143059774 143059792 ACTAGACACGCTGAAGGAG 59 143060090 143060108 GCCTCACTGGTCCTTTAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266,ENSRNOT00000090275 3 2 2 83 20 9855411 9855429 CTTCTGGATAACCCTGCTG 58 9852931 9855364 CATTGGCTTGGAGATAGGC 58 NA Rattus norvegicus 81 AABR07061078.1 ENSRNOG00000047920 ENSRNOT00000047620 3 1 1 60 4 103646649 103646670 GATCAGTAGAGTAGAGCCTGAG 59 103646610 103646631 ATAATGTGTACCTTGGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf9 ENSRNOG00000045595 ENSRNOT00000071515 3 1 1 112 9 9911800 9911819 AATACTGCAGACCAGGTCAC 60 9910682 9911387 TTACTCAGCGATGCTTGGT 59 NA Rattus norvegicus 81 Ddx42 ENSRNOG00000009474 ENSRNOT00000013046 1 1 1 80 10 94426172 94427422 GAGCTTTGTCAACAGATCCAC 60 94427463 94427482 TCCTCCATATACTGCCACTG 59 NA Rattus norvegicus 81 Vom1r101 ENSRNOG00000029263 ENSRNOT00000042796 3 1 1 60 4 119398395 119398413 ATCCTGCTGCTTATGACCT 59 119398353 119398372 AGTGGAAGATAACAGTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc21 ENSRNOG00000017876 ENSRNOT00000024218 3 1 1 80 2 60433571 60437279 CAGTAGATGGTAAAGACAGTGAG 59 60433513 60433531 AGGATTTGTCACAAGCTGG 58 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 1 2 3 115 17 53963269 53965584 AATTACCAGGTAAACAGGTGAG 58 53966398 53966419 GGCATTATGCAACATTTCAGTC 59 NA Rattus norvegicus 81 Anp32e ENSRNOG00000021168 ENSRNOT00000028744 2 1 1 80 2 198047338 198047360 CATACTTGGACGGATTTGATCAG 60 198047400 198048075 CCTCATCTCCATCCTCGTC 59 NA Rattus norvegicus 81 Mmp1b ENSRNOG00000008881 ENSRNOT00000011884 2 1 1 80 8 5630642 5630662 CACCACTAACATTCGAAAGGG 59 5630378 5630600 AAAGGTCACCATGGTCTCC 59 NA Rattus norvegicus 81 RGD1561552 ENSRNOG00000037827 ENSRNOT00000057460 1 1 1 248 X 79066862 79066883 GGATGAAAGCTAATGAAGAACC 58 79066122 79066140 ATGCCATGTTAGGTTTGCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561552 ENSRNOG00000037827 ENSRNOT00000057460 3 1 1 250 X 79066862 79066883 GGATGAAAGCTAATGAAGAACC 58 79066120 79066139 AAATGCCATGTTAGGTTTGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adam30 ENSRNOG00000019044 ENSRNOT00000025733 2 1 1 60 2 200330219 200330238 AAAGCCCTCTCCAGATTTCC 60 200330261 200330279 TGTCTTTCTTCAGGTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563056 ENSRNOG00000009178 ENSRNOT00000012164 1 1 1 82 5 50215498 50215516 TTGAAGATGCAGATGCCAG 58 50213244 50215454 AGCTTCTAGAGCCTTTAAGTC 57 NA Rattus norvegicus 81 AABR07008940.1 ENSRNOG00000011997 ENSRNOT00000015975 3 1 1 72 2 80270091 80270775 TTTCAACCTGTTCAAGGCC 59 80270811 80270829 AATGACCCTGAACAGCTCC 60 NA DesignRelaxed Rattus norvegicus 81 Rn60_X_0689.1 ENSRNOG00000026617 ENSRNOT00000036763 1 1 1 60 X 67981196 67981214 ACCCGACCTGTACAAATCC 59 67981236 67981256 AAAGGGATCTTCAATGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000050886 1 1 2 60 9 71778300 71778318 CAACTGAAACCTCCCATCC 58 71778171 71778278 CTCATAGAAGGTGATCTTCCC 57 NA DesignRelaxed, InUTR Rattus norvegicus 81 Ncr2 ENSRNOG00000042230 ENSRNOT00000065673 3 1 1 82 9 14649300 14649318 GTTAGCGCTTGGACTTGTC 59 14648090 14649257 GACATTTATTCCCGACGTTCTG 60 NA Rattus norvegicus 81 Fzd6 ENSRNOG00000004660 ENSRNOT00000006195 2 1 1 83 7 77900445 77900463 ATGGCCTACAACATGACGT 59 77900508 77918550 CAGAAAGTGCTCCATTTCCAC 60 NA Rattus norvegicus 81 AC103493.1 ENSRNOG00000050390 ENSRNOT00000074475 1 1 1 82 4 1710573 1710594 CTGGTTTGGATTGTCCAGAG 59 1710510 1710528 AATGTTTCCCACCACTGTG 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496,ENSRNOT00000081280 2 2 2 80 10 31334268 31334288 CCATGTACAAATCCTTGGACC 59 31330071 31334226 GAAGCCACTCTAGCTCCAC 60 NA Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 1 1 1 69 19 44231976 44231994 CAGAAGCTCAAACGGAAGG 59 44232027 44234571 TCCTCTTGTTCTGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555,ENSRNOT00000014979 2 2 2 80 1 251200370 251200905 GAGATTAAAGGGTTTACAGGCA 59 251200946 251200964 GGACAAGTTGGTCTTCAGC 59 NA Rattus norvegicus 81 Rn60_X_0674.1 ENSRNOG00000051153 ENSRNOT00000076788 1 1 1 60 X 66474925 66474949 CTTCAACATCAATTCCTACTCTTCC 60 66474964 66474985 GTCATTGAGAGCAATACCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc25 ENSRNOG00000015939 ENSRNOT00000021621 3 1 1 80 15 42542227 42542251 GAAGATAGAAGACATTCCAAAGGAG 59 42542289 42544515 ATCTTGCAGCCTTGAATGC 59 NA Rattus norvegicus 81 Wwox ENSRNOG00000012030 ENSRNOT00000058779 2 1 1 85 19 46770872 46770890 CCATGGAGATACTGCAGGG 60 46770935 46771472 GACTAGGAAGGTTCCTATTCCTG 60 NA Rattus norvegicus 81 Npm2 ENSRNOG00000025638 ENSRNOT00000032832 2 1 1 80 15 52340737 52341953 GAATGTTATGAGACTTCAGACATGG 60 52340681 52340702 ATCCTCATCTTCATCCTCTTCC 59 NA Rattus norvegicus 81 Fancl ENSRNOG00000027249 ENSRNOT00000029513 1 1 1 80 14 110737882 110739337 CTTGTATGAGTGGCTGAGAG 58 110739377 110739398 TTACTACAGTAGGGACATTCAC 57 NA Rattus norvegicus 81 Isyna1 ENSRNOG00000019741 ENSRNOT00000026821 1 1 1 80 16 20590686 20590704 TGACTTCAAGTCAGGGCAG 60 20590537 20590642 ATGGACATGGTCTTGAGGC 60 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 3 2 2 80 7 24660069 24667071 CGGTGATCATGAATCAGGC 59 24653190 24660026 CTTTCATTGACCCTTCTGGG 59 NA InUTR Rattus norvegicus 81 Ostf1 ENSRNOG00000012156 ENSRNOT00000016871 2 1 1 81 1 234789414 234792165 CTGAACCAGCAGAACAAGC 60 234792208 234792228 GTAGCAACTGGACAATGTCTG 59 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076334 2 2 3 87 13 77958975 77958993 CTGTCTACTTCAGTGCACC 58 77954860 77958924 GTCTTTCTGCAACTCCTCC 58 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000035637,ENSRNOT00000079779 2 2 2 60 5 144108161 144108179 TCAGGTTGAGTTGGATGAC 57 144108201 144108221 TGGGATATGGACATATCGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndrg1 ENSRNOG00000007393 ENSRNOT00000010811 3 1 1 80 7 107741339 107742342 TACTCAAGATGGCAGACTGTG 60 107739093 107739112 GCACAAAGTACTTGAAGGCC 60 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 3 2 2 80 11 14254242 14265431 CCTGGATGAAGAAACTGCC 59 14254180 14254201 TGTGATTCACTCAAGATGTCTG 59 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 3 2 2 80 10 62694593 62694612 GCTGGGTCATATCTTCACCA 60 62694136 62694550 TCTTCGAAGTTGTTCGGGT 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 3 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Zfp867 ENSRNOG00000022431 ENSRNOT00000038951 3 1 1 88 10 45812119 45812523 CTTCTATAGAGAAAGGGTGGGA 59 45811576 45811594 AGAGTTGGCTATGATGTGC 58 NA Rattus norvegicus 81 Chrdl1 ENSRNOG00000004330 ENSRNOT00000006008 2 1 1 80 X 114632995 114633014 AGAAATGGCATCCCTACCTG 60 114630679 114632954 AAAGCACATTCCCATTCTCTG 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000087752 1 1 2 155 3 149235270 149235289 TCAAGAGGATGGGCTTGAC 59 149237186 149237204 TCTTGACCTTGTCTGGCAG 60 NA InUTR Rattus norvegicus 81 AC130866.1 ENSRNOG00000055188 ENSRNOT00000087788 1 1 1 175 4 113901181 113901199 AAGACCTGGTTCCAGAACC 59 113900945 113900963 AAGAGTGACGAGTTGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Scgb2a1 ENSRNOG00000023151 ENSRNOT00000031612 3 1 1 80 1 225901117 225901135 GCTGTGAAGCAATTCAAGC 58 225901179 225901892 TATTGCCTCCATCATCACG 57 NA Rattus norvegicus 81 Pnpo ENSRNOG00000046493 ENSRNOT00000073746 2 1 1 93 10 84876843 84876861 GAACTACTTCCATTCCCGG 58 84876459 84876786 CTTTCTCAGGTACTCCCGA 58 NA Rattus norvegicus 81 Olr1068 ENSRNOG00000050013 ENSRNOT00000041565 2 1 1 60 7 9427442 9427462 TATTCTGCTGGGATTCTGGAC 60 9427402 9427423 CAAGAACAGTAAGAACAAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd14 ENSRNOG00000061129 ENSRNOT00000082769 3 1 1 80 3 47657377 47658908 AATGAACTGGAACAGAAGATGC 59 47658946 47658967 TTCACTGTAGTCCTGAAGTGTC 60 NA Rattus norvegicus 81 Sae1 ENSRNOG00000015128 ENSRNOT00000020402 3 1 1 80 1 78286786 78286804 ACGCAATGACGTGTTTGAC 60 78281201 78286744 ATCTCAGAGAAGCAGTACCTG 59 NA Rattus norvegicus 81 AC117925.6 ENSRNOG00000060514 ENSRNOT00000090828 3 1 1 89 4 114852979 114853092 GATGCTTCTTCAGTACAGGC 59 114852611 114852629 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000026163 3 1 2 93 19 37885156 37904546 CAAGCAAGAAGTCATCACCA 59 37904602 37904620 AGCTGTAAAGGAGGGTCTG 59 NA Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 1 2 2 80 X 68630149 68631792 GTGTCACTTGCATTGATGCT 60 68631833 68631853 GAACACTTCTGCAAACTCTGG 60 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 1 2 2 80 14 45853911 45853929 AGAAAGATCCAGATCCCGA 58 45852868 45853870 CGAAAGATAAAGTCAAGACACC 58 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000031807 1 1 2 80 15 5296730 5296748 AGAGATGGGACCACATGAC 59 5296788 5297164 CATCAAGTTCCAGAGGATTTGAC 60 NA Rattus norvegicus 81 Hes1 ENSRNOG00000001720 ENSRNOT00000002346 2 1 1 116 11 74315030 74315049 TGCCAGCTGATATAATGGAG 57 74314789 74314952 GCTTTGATGACTTTCTGTGC 58 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 3 2 2 80 X 116758229 116758247 CGCATCCAGAAAGAAGAGG 58 116757424 116758187 ATGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Olr251 ENSRNOG00000050593 ENSRNOT00000040363 3 1 1 60 1 172368666 172368686 TGTCTGTCTTCTACTTGTTGG 58 172368626 172368647 TTTCTGAGACTGTAAATGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps27a ENSRNOG00000004426 ENSRNOT00000005872 3 1 1 82 14 113967432 113967768 GGATAAGGAAGGAATTCCTCCT 59 113967371 113967389 AGTCAGACAAAGTACGGCC 60 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167,ENSRNOT00000074985 3 2 2 84 1 81343469 81343487 TGTTCCTACGAAGAGACGT 58 81343536 81344485 TTTCCCAGCACATCTAAGC 58 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 3 2 2 128 20 7296596 7298838 TGAATATCACAGCCGACCC 60 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Dcaf17 ENSRNOG00000009403 ENSRNOT00000031463 3 1 1 80 3 57667297 57667317 ACTGGATCTATTTCCACCCTG 59 57667356 57669411 CACTCAGCTTCAAGACTTTGAC 60 NA Rattus norvegicus 81 LOC100362344 ENSRNOG00000036910 ENSRNOT00000055433 1 1 1 60 4 184096727 184096746 TACCCACAGAAAGAGATCCT 58 184096686 184096705 AGTCCAATTCCTCTTCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 2 2 2 80 X 115633341 115633359 TCAACAACACCTTCTGTCC 58 115633011 115633297 CATGACGTTCTGTGAAGCT 58 NA Rattus norvegicus 81 Appl2 ENSRNOG00000008174 ENSRNOT00000010986 3 1 1 80 7 26276289 26279838 ATGGATGAGCTCAATGGTC 57 26279881 26279900 TCGGAACTGTATAACAGGGA 58 NA Rattus norvegicus 81 Vom1r83 ENSRNOG00000058204 ENSRNOT00000077129 1 1 1 60 4 88185101 88185120 ACCTGATCTCCTGTCAACTG 59 88185141 88185161 ATATCCCATCCAGTGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000042594,ENSRNOT00000013026 1 3 3 83 6 107289428 107289446 CATTCCGTGTCACAACTGC 60 107286875 107289381 CTGTCTCAGCTTTCTTGGC 59 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045,ENSRNOT00000092203 3 2 2 80 10 61210021 61211717 TGCAGGATTTCAAAGGTTTCC 60 61209961 61209979 GGAAAGTGGTGTACACCGA 60 NA Rattus norvegicus 81 Vash2 ENSRNOG00000003832 ENSRNOT00000005095 2 1 1 80 13 109544095 109544114 CTACAGGTTGTCCATGACGA 60 109540454 109544057 CCTGTATGGTTGTATTGTAGTGTC 59 NA Rattus norvegicus 81 Galk1 ENSRNOG00000006359 ENSRNOT00000008525 1 1 1 80 10 104561879 104562031 ACTCATTGACTGCAGGTCC 60 104561817 104561835 TTGGAGTTGGTGATGAGCA 59 NA Rattus norvegicus 81 Snurf ENSRNOG00000054391 ENSRNOT00000088874 1 1 1 80 1 195087607 195091203 CTGAGCAACCAAGAGTGTC 59 195087545 195087563 CAGTTCTGCCTGGAAATCC 59 NA Rattus norvegicus 81 Atp8b1 ENSRNOG00000024952 ENSRNOT00000038652 1 1 1 80 18 60044255 60044275 GGTGATTTATGAACGACTCCA 58 60042396 60044216 GTCTCACTTGCAAAGATATCCA 59 NA Rattus norvegicus 81 LOC102552549 ENSRNOG00000050874 ENSRNOT00000071495 2 1 1 126 10 84847288 84847419 GAGTACTGTAAACCCTGCG 58 84846840 84846858 TGATCTCAATCTCGAAGGC 57 NA Rattus norvegicus 81 LOC691418 ENSRNOG00000025980 ENSRNOT00000030754 2 1 1 60 3 110983005 110983026 TTTCTTCTCCTTCAAAGTGGAC 59 110983041 110983065 TAGTATCTGTAGAACTTCTTCCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golph3 ENSRNOG00000012186 ENSRNOT00000017276 2 1 1 96 2 62381118 62381140 GGAGATGTTCTTCTTGATGAAGC 60 62381193 62386857 ACGTCTCACCACTAAGTAACTC 60 NA Rattus norvegicus 81 Psmd4 ENSRNOG00000021042 ENSRNOT00000028589 1 1 1 80 2 196200638 196200656 GCAAGAATCACAAGATGCG 58 196200361 196200596 TAGCTAGTTTCACCAGATCCT 58 NA Rattus norvegicus 81 Stambpl1 ENSRNOG00000050224 ENSRNOT00000075598 3 1 1 80 1 252527990 252528010 ATCTCGCTAACTACTCTCCTC 58 252528049 252528918 CAACCACTAAATTCTGAACAGC 58 NA Rattus norvegicus 81 AABR07051708.1 ENSRNOG00000054828 ENSRNOT00000044455 2 1 1 60 3 19772155 19772173 GCAAGTCAGGGTATTAGCA 57 19772194 19772215 TAATCGTTCCATCTGGTTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uvrag ENSRNOG00000016206 ENSRNOT00000022176 2 1 1 80 1 164025593 164046112 TTGAACACAAGGCTCATCC 58 164025531 164025550 ACACATCATAGGAATTGCGA 57 NA Rattus norvegicus 81 Dstn ENSRNOG00000005924 ENSRNOT00000007794 2 1 1 83 3 138046135 138047811 CATGTTCTTCTTGTGGGCA 58 138047858 138047876 TTCTTCTTGATGGCGTCCT 59 NA Rattus norvegicus 81 LOC679823 ENSRNOG00000028883 ENSRNOT00000052265 1 1 1 60 10 10876065 10876084 AAATTGAAATCAGCCAGCAC 58 10876107 10876125 TTCATCTTGGTCTTGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 3 2 3 80 X 65092893 65093233 CAAGACTGGACGAAATGCTC 59 65092832 65092851 GAAGAGCAATTGAACAGCCT 59 NA Rattus norvegicus 81 Eef2k ENSRNOG00000016448 ENSRNOT00000022726 1 1 1 80 1 190817932 190817951 CGAGGTTCTGATCAAGATGG 58 190819629 190820056 TTGGAGAGTTTCTTCGTCCT 59 NA Rattus norvegicus 81 Omg ENSRNOG00000014107 ENSRNOT00000018891 2 1 1 104 10 66847335 66848252 CGACATTATGGCTTTGATGGA 59 66847251 66847270 CATTGGAGAGGACAAATGCA 59 NA InUTR Rattus norvegicus 81 Sri ENSRNOG00000049780 ENSRNOT00000073790 2 1 1 85 4 23016165 23016184 TAACTCAGTCTGGCATAGCG 60 23011931 23012797 CATATCTCTATCCAGCATTGAAACC 60 NA Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650 1 1 2 80 11 75955065 75955086 GATATTTCCTGCAGATGCATCC 60 75955123 75980377 TTAGATTGAAGAGGGTGTAGTCG 60 NA Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650,ENSRNOT00000071586 2 2 2 100 11 76151524 76151545 AAGAAGGTCAAATCATGAAGGG 59 76168674 76168695 AGATGGTTCTCTGTACATACAC 57 NA DesignNoJunction Rattus norvegicus 81 Lrrn3 ENSRNOG00000006368 ENSRNOT00000008655 2 1 1 81 6 61404899 61404917 CTCAACCAAGGAACTGTGC 59 61377055 61404857 AGATAGAGGCATTATTCTTGCC 58 NA InUTR Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 2 2 2 80 10 71401901 71405131 TTGAAAGCCATGCATTGGA 58 71401839 71401858 AATTGGTAATGCCTGCTGTC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792,ENSRNOT00000031331,ENSRNOT00000077458 3 3 3 80 6 108525329 108525349 TCCCAAATGGATACAGATGTG 58 108524642 108525288 ACTCGTTGTCATCAGTACAG 57 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 1 3 3 80 4 23117460 23117480 ACCCTTGTGATTCCTATTCGT 59 23115920 23117422 GTCTTTATTAGTTAGGGCCTGAG 59 NA Rattus norvegicus 81 Il13ra1 ENSRNOG00000013170 ENSRNOT00000017746 3 1 1 80 X 122767775 122781393 GATGATACCCTGCACTGGA 59 122781434 122781455 TTCTATCAGCACTACAGAGTCG 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920,ENSRNOT00000041365 3 2 4 80 12 5709250 5711374 GCATTCCTTGGCCTTATACC 59 5709189 5709207 ACGTGCCATCTGTTAAGGA 59 NA Rattus norvegicus 81 Hsdl2 ENSRNOG00000016692 ENSRNOT00000059458 1 1 1 80 5 76823794 76823813 AACACATTGGAAACTCCGAC 59 76823854 76826983 TGCTTTGGATGTAAGGTAGGT 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000079524,ENSRNOT00000085650 1 3 3 80 7 104702162 104703956 GTGCGAAGATCTGCTTTCC 59 104702100 104702118 TGTCGAAGATTCCACTCGT 59 NA Rattus norvegicus 81 Art5 ENSRNOG00000020242 ENSRNOT00000055243 3 1 1 94 1 167194484 167195458 TCCTCTGGAAGGTACAAGC 59 167194408 167194426 CTCCATCTCCTCAGAGCAG 59 NA Rattus norvegicus 81 Cd37 ENSRNOG00000020699 ENSRNOT00000066834 1 1 1 80 1 101233923 101234023 TCTTCTGGGCCTGTATTTCG 60 101233862 101233880 CGCTGAGTGGAAATGAGGA 60 NA Rattus norvegicus 81 Mrgprx2l ENSRNOG00000022729 ENSRNOT00000030162 3 1 1 60 1 103810268 103810292 CAGAAGAATATGTAGAAATGGGCTC 60 103810232 103810253 CCTTGCAGACTGTTTACTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lypla2 ENSRNOG00000010067 ENSRNOT00000014415 1 1 1 85 5 154317245 154317264 ATGTCAAGTACATCTGTCCC 57 154316656 154316757 CATCAGGTCAAACCAGGAG 58 NA Rattus norvegicus 81 Vom1r88 ENSRNOG00000031987 ENSRNOT00000040163 2 1 1 60 4 88423415 88423434 TCCTCATCACATACTGTCCT 58 88423454 88423475 GAAACATATTGGCTATGACTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240,ENSRNOT00000082161,ENSRNOT00000034969 1 4 4 80 4 15720336 15720354 TTGCGACATGGTTAAGCAG 59 15710905 15720293 TCGGTATAATCCTCCAGCAC 59 NA Rattus norvegicus 81 Aif1l ENSRNOG00000009951 ENSRNOT00000013286 1 1 1 80 3 9243111 9243129 AGTGACACCATCTCCTACC 58 9240508 9243069 AAACATCATGACCAGCTTGAG 59 NA Rattus norvegicus 81 Vwce ENSRNOG00000060269 ENSRNOT00000079679 1 1 1 80 1 226694158 226696745 CATAGCTGCCAAGACACTG 59 226696787 226696807 GCACTTATAACTGCCAATGCT 59 NA Rattus norvegicus 81 Cbll1 ENSRNOG00000007253 ENSRNOT00000009566 3 1 1 82 6 50782465 50786768 TGGATCACACTGACAATGAG 58 50782402 50782422 TATAGGAATTCTTCTGCGGAC 57 NA Rattus norvegicus 81 Ostn ENSRNOG00000030462 ENSRNOT00000049841 2 1 1 82 11 76855975 76874449 CATAGAGGGAAACAAAGGAGAG 58 76855914 76855933 AGACGGTTTCTACCAATTCG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076709,ENSRNOT00000004972 1 3 5 80 X 71312846 71312864 CTGCACATCCTTCTTTGCC 60 71311570 71311893 CGCTTCTCTTCTGTACCCT 59 NA Rattus norvegicus 81 AABR07058124.1 ENSRNOG00000037549 ENSRNOT00000056894 3 1 1 80 7 101070189 101070211 CTACCGTCTAAACAGAATGACAG 59 101070248 101070870 TCTGGTAGAGTTTCATCACTCC 59 NA Rattus norvegicus 81 LOC683422 ENSRNOG00000047632 ENSRNOT00000072438 2 1 1 84 15 47470999 47472106 TCGACCAAATAAACAACGCT 59 47472152 47472171 TCCACTTTCTCATGCTTCAC 58 NA Rattus norvegicus 81 Ocm2 ENSRNOG00000001031 ENSRNOT00000043439 2 1 1 80 12 12630104 12630570 GAGATGAGCTCAAGTATTTCCT 58 12630611 12630629 CCATCAAGGACTTGGTCTC 58 NA Rattus norvegicus 81 AABR07061136.1 ENSRNOG00000033938 ENSRNOT00000052417 1 1 1 60 4 106361798 106361817 ATCAAGATGACCCAGTCTCC 59 106361839 106361858 TGATGGTGACTCTTTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f6 ENSRNOG00000009459 ENSRNOT00000012558 1 1 1 80 6 27098003 27098625 AGTGAAGTAATCACAGGTGAC 58 27097943 27097962 AAACTTCTCCTCTAGCACCA 58 NA Rattus norvegicus 81 A1bg ENSRNOG00000004692 ENSRNOT00000006273 1 1 1 80 7 102296889 102296910 TACCGTATGCACAAATACATGC 60 102296368 102296849 TGGTAGTTTCTCGTCACTCC 59 NA Rattus norvegicus 81 A1bg ENSRNOG00000004692 ENSRNOT00000006273 3 1 1 83 7 102296368 102296849 GGAGTGACGAGAAACTACCA 59 102296304 102296322 GAAGCTGCACTGTTGAACC 60 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253,ENSRNOT00000017252 3 2 3 81 2 243732449 243732467 TCTTAGGACATGAAGGCGC 60 243732512 243733164 GGGATGACGGTATCACCTG 60 NA Rattus norvegicus 81 Rsl1d1 ENSRNOG00000032439 ENSRNOT00000044593 3 1 1 80 10 4379129 4379147 TTGCTGATGAACGAATCCG 59 4379187 4379292 CAGATACTGGAACTTTCTTCCTC 59 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 1 2 2 80 8 71918617 71918637 GAAATCGTGAACTATGAGCCA 59 71919308 71923104 TCCACTTAGAAGGATGTAGGT 58 NA Rattus norvegicus 81 LOC100910717 ENSRNOG00000052664 ENSRNOT00000079808 2 1 1 80 1 255519198 255520628 TATTTGAGCGAGAACAGATCAC 59 255520669 255520687 ACGCACTGATTCCAATCTC 58 NA Rattus norvegicus 81 Pls3 ENSRNOG00000027520 ENSRNOT00000060168 1 1 1 80 X 119119970 119123031 CAATAACGCCAAGTATGCAG 58 119123074 119123092 ACTTCCACAAGGTCTTCAG 57 NA Rattus norvegicus 81 Pls3 ENSRNOG00000027520 ENSRNOT00000060168 3 1 1 80 X 119115405 119116433 CTCTATGTTGACCTGCAGGA 59 119116474 119116494 AACTTTACTCCAGTCCACAGG 60 NA Rattus norvegicus 81 Ihh ENSRNOG00000018059 ENSRNOT00000024419 2 1 1 80 9 82209684 82211250 GCTCTGTCAAGTCTGAGCA 60 82209622 82209641 CAGTTTCTAGGTGGACCTGG 60 NA Rattus norvegicus 81 Mrpl12 ENSRNOG00000036695 ENSRNOT00000054965 3 1 1 110 10 109658326 109658827 CTTGTCAGGCAACAGATGC 60 109658900 109658919 CTCCTTGGGAGCATTATCCA 59 NA Rattus norvegicus 81 Sf3b4 ENSRNOG00000021181 ENSRNOT00000028758 3 1 1 89 2 198313127 198313146 TATGGGAGCTCTTTCTCCAG 59 198313198 198313660 CAAAGCCATAGCCTTGGTG 59 NA Rattus norvegicus 81 Rars ENSRNOG00000007739 ENSRNOT00000010252 2 1 1 80 10 20640739 20641644 GGACAATGGACAAGCTACAC 59 20640678 20640700 CGAGTAACTTTAGGGTCATACCA 60 NA Rattus norvegicus 81 Bex2 ENSRNOG00000032729 ENSRNOT00000042126 1 1 1 162 X 106557464 106557881 ATAGGCCCAGGAGAAATGG 59 106557320 106557338 GCACGTAGTATTCTCCAGC 58 NA InUTR Rattus norvegicus 81 Ift43 ENSRNOG00000010194 ENSRNOT00000013560 3 1 1 83 6 109993708 109994980 GAAGAAATGGAAGATCGCCG 60 110015366 110015384 CAGATCTGGGATCACAGGG 59 NA Rattus norvegicus 81 Rn60_12_0305.1 ENSRNOG00000051210 ENSRNOT00000076527 1 1 1 60 12 28477085 28477104 TGTCAACTTTGCTTCTCAGG 59 28477125 28477145 CTACTGACTGAAGTTTGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapkbp1 ENSRNOG00000007018 ENSRNOT00000009430 3 1 1 80 3 111803236 111803443 ACCTCAAAGGTGAATGCCA 60 111803485 111803505 ATCAGTAAACAGGTTGTTCCG 59 NA Rattus norvegicus 81 Rn60_7_1414.6 ENSRNOG00000057014 ENSRNOT00000084907 3 1 1 60 7 143511379 143511398 AGGTAGCATTGGAAGAACTG 58 143511338 143511362 GACTCTAGACCTATTAAAGACACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed6 ENSRNOG00000020406 ENSRNOT00000027686 2 1 1 80 19 39266741 39266760 GGGTTTCCTTATTGACACCT 58 39265926 39266700 CAAAGCTGATAGAAACCTGTC 57 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 3 2 2 80 7 137988982 138002514 TCCTGTTTCTGATACTTCTGAC 58 137988923 137988941 TTTCCTTGGAGCAGATCAG 57 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484,ENSRNOT00000089294 3 2 2 80 11 81378691 81378790 GTCATCGAGAGCAACTGGA 60 81378629 81378648 ATAGATGCCTCGAAGAAGGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 80 4 14184370 14185778 AAGTGCAAAGAAGGAAAGCC 59 14185817 14185839 TTCGATAGGTTCTGAGACATCAG 60 NA Rattus norvegicus 81 3082ex4-5 ENSRNOG00000052365 ENSRNOT00000084179 1 1 1 60 20 2493771 2493789 ATTCACCAACCCGGAAGAG 60 2493811 2493831 GTCTTCATAAGCTCCATGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9a5 ENSRNOG00000028844 ENSRNOT00000068299 2 1 1 82 19 37320265 37320283 AGGATGGTGTGGCTAATCC 59 37320329 37320995 TAGGATCACAGCAGCTGTG 60 NA Rattus norvegicus 81 RGD1310429 ENSRNOG00000000237 ENSRNOT00000000254 3 1 1 81 10 67741835 67741855 CAGAGGAACAGCATAAGTCTG 59 67739804 67741792 CAGAAACGGTTGCTTCCTG 60 NA Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000059386,ENSRNOT00000077748 2 2 2 81 8 50597401 50597420 CCTGGGATCTTCCAAGACTG 60 50596394 50597357 GATCTTCAAATGGCGCCAG 60 NA Rattus norvegicus 81 Npc2 ENSRNOG00000012062 ENSRNOT00000016076 3 1 1 81 6 108472025 108479447 CTTTACTAGCGGCACTCAG 58 108471962 108471982 AATAGGGAAGTAGACTGGGAC 58 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 3 2 2 60 15 19727803 19727822 AAGGTATTGGGTCAGTTGAC 58 19726203 19727782 AAGATTTCATGAACTGCTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Hcfc2 ENSRNOG00000053510 ENSRNOT00000086905 2 1 1 80 7 27116074 27119427 ATAACAGTGTTAGTGATCCAGC 58 27116015 27116033 TGCTCTTCAGTGACATTCC 58 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000070893 3 1 2 80 15 2818477 2818500 AAGTGCTAAATCCCTTCGAC 58 2818414 2818432 CCTCCTCCACTTGGATCTC 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000054828,ENSRNOT00000028651 3 3 3 105 1 221884357 221884375 GACGGCAAATATCACGTGG 59 221884444 221888106 TATCAAAGTTCCCTGCCGG 60 NA Rattus norvegicus 81 Fam179a ENSRNOG00000026344 ENSRNOT00000036374 1 1 1 80 6 23385141 23388603 TGCATCAGCTAACTCATTACC 58 23385081 23385100 AGATCCATCTCCTCTTCCTC 58 NA Rattus norvegicus 81 RGD1564541 ENSRNOG00000012564 ENSRNOT00000016993 1 1 1 80 X 123465032 123465919 CCTAAGAAGGTTATGATGACCA 57 123464973 123464993 TTCCTCATCAATGGTAGACAC 58 NA Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000089242,ENSRNOT00000063900 2 2 2 80 6 108146083 108146101 GTGCCAGTATCAGACTCCA 59 108146143 108149140 CCTAGGCTCTATGTCAGAGTC 59 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 2 3 3 80 X 70333250 70333269 GTCATCTCTTCCAGAGAAGC 58 70333311 70333991 CCAGTTCCAAATACTTTGGC 57 NA Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000076989 1 1 2 60 13 79079858 79079878 TGTATTAAAGGGTCACAGCAC 58 79079818 79079836 TCCATCCCTCCTCTAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cngb3 ENSRNOG00000006084 ENSRNOT00000008087 1 1 1 80 5 33360165 33360186 TGTTTATTACTGGGCTTCAGAC 59 33360225 33369823 CGCAGATACTTGTTTCCTTCC 59 NA Rattus norvegicus 81 Ctcf ENSRNOG00000017674 ENSRNOT00000023853 1 1 1 80 19 37633889 37633908 GGCATCGTCGTTATAAACAC 57 37633949 37637371 ATTTGCTGACTTCTACACTGG 58 NA Rattus norvegicus 81 Btnl5 ENSRNOG00000047304 ENSRNOT00000060394 1 1 1 80 20 2729468 2729489 GAGAAGGATGAGTTACAGACGA 59 2729121 2729223 TTTCCTCCTATCAAGTTCCTCC 59 NA Rattus norvegicus 81 Btnl5 ENSRNOG00000047304 ENSRNOT00000060394 2 1 1 80 20 2729468 2729488 AGAAGGATGAGTTACAGACGA 58 2729120 2729222 CTTTCCTCCTATCAAGTTCCTC 58 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 2 2 2 80 14 16378598 16378619 AGACAGATGTTTGTCATGAGAG 58 16377750 16378559 GTCAAACTTCTCATGAAGCTC 57 NA Rattus norvegicus 81 Rn60_X_0722.3 ENSRNOG00000051057 ENSRNOT00000075839 3 1 1 60 X 71321698 71321717 CCCTTTACATGTGCTATGGA 57 71321736 71321758 GCTAGTATAGCAGACATTGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr271 ENSRNOG00000055938 ENSRNOT00000088537 2 1 1 60 1 172807570 172807590 CCATGTACTTCTTTCTCAGCC 59 172807610 172807630 GTGACAGAAGATGAGTAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult1a1 ENSRNOG00000019342 ENSRNOT00000026186 3 1 1 82 1 198100962 198101084 TGAGGAAAGGTACTACTGGG 58 198100899 198100917 TGTCTTAGCATAGTGGGCA 58 NA Rattus norvegicus 81 RGD1560069 ENSRNOG00000038041 ENSRNOT00000057891 3 1 1 60 15 82581894 82581913 GGCAAATTCAAGAGACCCAG 59 82581853 82581872 TGCATCCAGAGTATTGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000073770 2 1 2 92 1 227454476 227457484 TCTTAGGGTTCATTAACTCTGG 57 227452375 227452393 GTAAATTCATCGCCTGGCT 58 NA Rattus norvegicus 81 Klhdc2 ENSRNOG00000004474 ENSRNOT00000006223 2 1 1 80 6 91595966 91598991 CGGCTACAAGAGTAATCAAGTG 59 91599028 91599050 GTCTCCATATTGTAGATCCACAG 58 NA Rattus norvegicus 81 LOC100909648 ENSRNOG00000048522 ENSRNOT00000074512 3 1 1 147 13 48368911 48368929 ATCAGTACCATCTCCAGGG 58 48369037 48377758 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Snf8 ENSRNOG00000006500 ENSRNOT00000008964 2 1 1 80 10 83863573 83863594 GACTTCTATTATGAACTGGGCG 59 83863634 83864873 CAGAGTTATCAGACCTCCGT 59 NA Rattus norvegicus 81 Olr613 ENSRNOG00000045685 ENSRNOT00000047702 2 1 1 60 3 76345342 76345361 CTCTTGTGATTCCCATGCTG 59 76345301 76345320 TGTTTCACATCCTTGTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Poli ENSRNOG00000012111 ENSRNOT00000016189 2 1 1 80 18 65757657 65757951 AAAGGAAATGCCTGGTATCG 58 65757596 65757614 GTCTGGAGATCATGCACAC 58 NA Rattus norvegicus 81 Gpr4 ENSRNOG00000016362 ENSRNOT00000021893 1 1 1 60 1 80135786 80135804 TGCTGTACATCTGTACGCT 59 80135827 80135846 ATCCAGTTGTCATGGTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363642 ENSRNOG00000046832 ENSRNOT00000072047 1 1 1 60 X 73601726 73601750 GGATAAAGAGGAACTACATAACCAG 59 73601690 73601709 TCGTTTGCTATCTCTTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcyox1l ENSRNOG00000019643 ENSRNOT00000026583 1 1 1 82 18 57025831 57025849 TACTACGGCATCAGCTTCC 59 57023093 57025787 GCCTGGTACTTGTAGATCCTC 60 NA Rattus norvegicus 81 Izumo3 ENSRNOG00000022488 ENSRNOT00000033781 2 1 1 80 5 110705122 110705141 CCTGTCCTTGATTGTTGGAC 59 110704705 110705080 CCTTGGGTCATCATCTTGAC 58 NA Rattus norvegicus 81 LOC685793 ENSRNOG00000030145 ENSRNOT00000041610 2 1 1 60 1 55221212 55221230 ACCGATGACACCTACACAG 59 55221254 55221272 TTGAATGCATGGGACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps35 ENSRNOG00000017612 ENSRNOT00000024020 1 1 1 80 19 27496943 27497558 GAATTTATGTCCCAGGCGT 58 27497601 27497620 GATCAAAGTGATAGCAGCCA 58 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097,ENSRNOT00000044956 3 2 2 90 8 111840635 111843636 TGCTCCAGTAACAGTTACAG 57 111840564 111840582 TTTCCTTGTCGTGGTTAGC 58 NA Rattus norvegicus 81 Ccdc28a ENSRNOG00000053347 ENSRNOT00000085519 1 1 1 80 1 13390454 13390474 GAGTTAGAAGAACTTCCGGAG 58 13386911 13390414 TTCTTCTAAGTCAGACAGCAG 58 NA Rattus norvegicus 81 Olr416 ENSRNOG00000029069 ENSRNOT00000049651 2 1 1 60 3 20914211 20914229 TCACCCTCTCCACTATTCC 58 20914169 20914190 TAGGATAAGCATCAGGACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tert ENSRNOG00000025327 ENSRNOT00000022683 2 1 1 80 1 32252642 32252661 TCTTTCTGGGCATCATCTCC 60 32252395 32252599 CCCTTAGTGACACTCCTGG 59 NA Rattus norvegicus 81 RGD1310371 ENSRNOG00000012301 ENSRNOT00000016433 3 1 1 86 1 145911539 145911557 TCACCCATCTGAACTGGTG 59 145908559 145911489 TTTCATTTGCCCTGACTGG 58 NA Rattus norvegicus 81 Il19 ENSRNOG00000025571 ENSRNOT00000035044 3 1 1 80 13 47665902 47666783 ACTCTGGAGCAATGTCAGG 59 47665840 47665860 GTTGTCATGGATTGTTCTGGT 59 NA Rattus norvegicus 81 Acox2 ENSRNOG00000007378 ENSRNOT00000010260 1 1 1 80 15 18457901 18457921 CCTCTCAGAATTCTTCCACAG 58 18457963 18459697 CTCAATGCATGGAGCTCAG 59 NA Rattus norvegicus 81 Pin4 ENSRNOG00000050051 ENSRNOT00000073157 3 1 1 88 X 72007717 72011067 TGCAGTAAAGGTCAGACAC 57 72011118 72011137 CACTGAATCTCATCCCAGAC 58 NA Rattus norvegicus 81 Bach2 ENSRNOG00000006170 ENSRNOT00000065882 1 1 1 80 5 47789524 47789544 TGACGAATCTGGATCATTCTC 58 47789584 47801525 AAAGGAAGTTTAACCTCCTGG 58 NA Rattus norvegicus 81 Tnfrsf25 ENSRNOG00000021814 ENSRNOT00000055466 3 1 1 80 5 169291299 169291416 GCTGGAAGCAGATGTTCTG 59 169291459 169291478 GACAGTATGCACAGATCAGG 58 NA Rattus norvegicus 81 Olr987 ENSRNOG00000050676 ENSRNOT00000048882 1 1 1 60 4 13565501 13565521 AATCACAGAGTTCTACCTCCT 58 13565461 13565479 TTTGCAGATGGCTACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447,ENSRNOT00000087632 2 2 2 80 7 142146849 142146868 ATTTCTCCTCAGCAGATCAG 57 142142952 142146806 CTGTACCATCTCATCGCTG 58 NA Rattus norvegicus 81 Mtbp ENSRNOG00000004412 ENSRNOT00000005887 2 1 1 80 7 95357763 95363198 ATGGTAAATGATGCCAGTAGAG 58 95363239 95363257 GTGTCTTTCTGGCCATTCC 59 NA Rattus norvegicus 81 Romo1 ENSRNOG00000045555 ENSRNOT00000072464 2 1 1 83 3 152223024 152223042 AAGATGGGCTTTGTCATGG 58 152223089 152224125 CATTCCGATCCTGAGACAG 57 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 1 3 3 80 11 67232407 67235050 GGAGTGCATTAGGTATAACTTCC 59 67235090 67235108 GGGCTGCTGTTTATCTCCT 60 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957,ENSRNOT00000064266 3 2 2 80 5 172301229 172301617 CAGAAACCTGATCGTCTTTCC 59 172301659 172301677 CCGAAATTCAAGGCCTGTG 60 NA Rattus norvegicus 81 Szrd1 ENSRNOG00000009183 ENSRNOT00000045226 2 1 1 99 5 159643874 159645427 AAGGAGAGCAGGAAATCCA 58 159643793 159643811 TCTTGAGGATGCGGATCTG 59 NA Rattus norvegicus 81 LOC691931 ENSRNOG00000010875 ENSRNOT00000014510 2 1 1 236 2 232245273 232245291 CACTTCTAGGGTTCCCGTC 60 232214781 232245073 GTTCTTCAGCATCCTGCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 RGD1560556 ENSRNOG00000022791 ENSRNOT00000032743 1 1 1 80 6 78590411 78590429 CAGACCAGACCATCAAGGA 59 78590471 78625338 CCATCATCGAAATGTCTTCCA 59 NA Rattus norvegicus 81 AABR07001592.3 ENSRNOG00000059551 ENSRNOT00000075019 3 1 1 60 1 54034970 54034989 AGACCCAGCCATTCTTAGAG 59 54034929 54034947 GTCTTTAACCTCTTGGGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1411.3 ENSRNOG00000054046 ENSRNOT00000083662 1 1 1 85 7 143239555 143239573 GAAGGAGTACCAGGAGCTC 59 143238806 143239507 CCTTTCAACCTTCCAACAGC 60 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907,ENSRNOT00000074811 3 2 2 81 X 85465788 85467457 CTGAGGATGTTGAAAGATTCTGG 60 85467498 85467516 CTTGCATAGCAGCACTGTC 59 NA Rattus norvegicus 81 Brms1 ENSRNOG00000047683 ENSRNOT00000072647 2 1 1 80 1 220423501 220423519 GAGGCAGATGAGAGTGAGG 59 220423562 220423686 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 LOC688010 ENSRNOG00000028982 ENSRNOT00000051589 1 1 1 136 1 103900590 103909850 GAGGAAAGAAACATCAGCGA 58 103900473 103900491 GCAACGATGAAGGAAAGCA 59 NA Rattus norvegicus 81 Ccdc91 ENSRNOG00000001847 ENSRNOT00000002527 3 1 1 80 4 181997174 181997192 GAAACACTGGGAAAGTGCC 59 181997234 181998645 TTCTTTCTCAAGCTTCACAGC 59 NA Rattus norvegicus 81 Serf2 ENSRNOG00000015277 ENSRNOT00000056151 3 1 1 91 3 113416432 113416450 ACATGAAGAAGCAGAGCGA 59 113416505 113417153 CATGATCTCCGAGTCCCTC 59 NA InUTR Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 2 2 3 92 10 13306214 13306344 AGAGCCCAGAATATTCTGGG 59 13306399 13306417 TAAGAATATCCGCAGGCCC 59 NA Rattus norvegicus 81 LOC691189 ENSRNOG00000036888 ENSRNOT00000005445 1 1 1 80 10 85714859 85716941 CTGATCAGGATCATGGTGGT 59 85714798 85714817 GGTATCTCTGTCCTTGACCA 59 NA Rattus norvegicus 81 Nppb ENSRNOG00000008141 ENSRNOT00000010779 1 1 1 81 5 164796398 164796638 AATCCACGATGCAGAAGCT 60 164796683 164796701 CCTTGGTCCTTTGAGAGCT 59 NA Rattus norvegicus 81 Olr832 ENSRNOG00000048539 ENSRNOT00000049091 2 1 1 60 4 148711529 148711548 TGTTTCATACAAGCCTTCGT 58 148711488 148711507 CAGCCATGAGAAGAGAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r104 ENSRNOG00000032448 ENSRNOT00000048210 3 1 1 60 4 165809553 165809572 CCCATTTCCCTCTTTATGGT 57 165809512 165809533 TCCAAAGGGAAATGGTTAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632,ENSRNOT00000051754 2 2 2 80 7 117470994 117471479 TTCAGATATCTAAGAGCCTGGG 59 117471520 117471538 CTTCAAGCTGAACCTCCAG 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274,ENSRNOT00000050188 2 2 2 80 5 173076691 173076709 CCTAAAGGCCTACACTCCA 58 173076752 173076894 GTGGAGTATTCCTTAGCACC 58 NA Rattus norvegicus 81 LOC690082 ENSRNOG00000047724 ENSRNOT00000023181 1 1 1 111 1 146968004 146968022 TAACATCCAAGCCCAGGTC 59 146967827 146967845 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Coro1a ENSRNOG00000019430 ENSRNOT00000026496 1 1 1 80 1 198124921 198124939 AGTCTCAACGTGGTATGGG 59 198124776 198124883 GAAGCTTATAGAATCTGGCAATCTC 60 NA Rattus norvegicus 81 Olr425 ENSRNOG00000007986 ENSRNOT00000010501 3 1 1 60 3 21148276 21148297 GAACTGGCTATATTCTTGGAGG 58 21148237 21148258 GTACAATAAGGGAACAAGGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181,ENSRNOT00000090273 3 2 2 80 20 20353291 20358512 ATGACCACCACTACCATCAC 60 20358555 20358573 ATCGTCTGACATGTCGAGG 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 2 2 2 83 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019871 77019890 AGCTGAGTTTCTGTTGACTC 58 NA Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 3 2 2 60 5 159981659 159981677 TCCAGATTCCCTCCCTACC 60 159981617 159981635 GCCTGTCTTGGCTTTAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r2 ENSRNOG00000034119 ENSRNOT00000052300 2 1 1 60 1 86362705 86362725 AGAAACGTGTCCATTAGTACC 58 86362747 86362765 GACTGATGGTGATTGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sprr1a ENSRNOG00000024028 ENSRNOT00000012174 2 1 1 166 2 192669912 192671041 CTGAGTATTAGAACCAAGTACTACC 58 192669770 192669788 TCAGGAATAGGGTGACAGG 58 NA InUTR Rattus norvegicus 81 AABR07054723.1 ENSRNOG00000036747 ENSRNOT00000051082 1 1 1 80 3 167788706 167788978 GCATGAAAGAACACATACAGG 58 167789019 167789038 TTCAGATCACTTCTTCGTGC 58 NA Rattus norvegicus 81 Camk1d ENSRNOG00000017882 ENSRNOT00000024099 3 1 1 80 17 76899196 76899214 GAAGTTCTTGCCCAGAAGC 59 76899257 76916029 ACCACAGAGCAGGATATAGG 58 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 2 2 2 80 9 67699616 67702709 CTCTGAAGCCATACAAGTGAC 59 67702749 67702769 GCATATTCACATGGAAAGCTG 58 NA Rattus norvegicus 81 LOC100363427 ENSRNOG00000047502 ENSRNOT00000073793 3 1 1 60 15 19052777 19052797 ACAATGATCTCTATGGTTGGG 58 19052737 19052759 CCTTCATAAAGTGTATCTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sephs1 ENSRNOG00000018125 ENSRNOT00000024697 1 1 1 80 17 77331224 77333394 ACCCTTACATGATGGGCAG 60 77331162 77331183 TATTGTCACATTCTGTGACACC 59 NA Rattus norvegicus 81 Sephs1 ENSRNOG00000018125 ENSRNOT00000024697 2 1 1 80 17 77331225 77333395 GACCCTTACATGATGGGCA 60 77331163 77331183 ATTGTCACATTCTGTGACACC 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 2 2 2 80 11 83911275 83911530 CTGGATAGAGGCCAACCTG 60 83911213 83911236 GAATAACAGACAGTTGTCATGAGG 60 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 2 3 4 81 18 6777413 6777431 CTGATGTTACTGGTTCCGT 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 AABR07053185.1 ENSRNOG00000004787 ENSRNOT00000006385 3 1 1 80 3 95856528 95856547 ACAACCAATCACAGTCTACG 58 95850763 95854226 TAGTCACTATGCCTACAGACAG 59 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 3 2 2 80 19 44974642 44974660 GTTTCTGCGCTTCATTCCT 59 44974703 44988570 TATAGGCAACCTCCGAACAC 60 NA Rattus norvegicus 81 Psmc6 ENSRNOG00000007203 ENSRNOT00000009649 3 1 1 80 15 19668582 19668684 GTGTTGGACAGATTGTAGGC 59 19669687 19669705 ATCTTGGTCCGTTTGTTGC 59 NA Rattus norvegicus 81 Gbp2 ENSRNOG00000031743 ENSRNOT00000068683 1 1 1 80 2 248291134 248291433 AGGAGATTGAAGTGGAACGG 60 248291474 248291494 CAAACTTCTCCTGCTTCTCTG 59 NA Rattus norvegicus 81 Tvp23a ENSRNOG00000025545 ENSRNOT00000029359 2 1 1 83 10 5328480 5328498 GTTCAGCAGGAGCTTTGTG 60 5328542 5329758 CCAGTTACATTCTTCACAGACC 59 NA Rattus norvegicus 81 Gsdma ENSRNOG00000007943 ENSRNOT00000048349 1 1 1 80 10 86591406 86593105 GCTCTGACAGTGCTAAGTG 58 86593149 86593167 TTTCAGTTGCAGTGGTAGG 58 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 1 2 2 80 6 53732365 53747046 AATGTGAGCGAATTCAAGGT 58 53732304 53732327 CATACAGTAGTGAGTGATGTTCAG 59 NA Rattus norvegicus 81 Olr1179 ENSRNOG00000033150 ENSRNOT00000050101 2 1 1 60 8 20728940 20728959 AACCTGCTCATCATCCTGAC 60 20728976 20729000 AGAAGTACATAGGATTATGGAGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikbke ENSRNOG00000025100 ENSRNOT00000038151 3 1 1 80 13 48042599 48042617 CAAAGGAGCCTGAGTTGTC 59 48040055 48042560 CTTCTGGATACTTCTGTTATCCTC 58 NA Rattus norvegicus 81 Bicd1 ENSRNOG00000036911 ENSRNOT00000055435 1 1 1 80 4 184091277 184091297 CGGGCTGTAGTTACAAATGTC 59 184091337 184109187 CATCTCGTTGTTCTCCTTCAG 59 NA Rattus norvegicus 81 C1galt1c1 ENSRNOG00000002536 ENSRNOT00000003449 2 1 1 80 X 124922924 124926074 TTCTAGATGCGGAAACATGC 59 124922863 124922881 ATCAAGGCACAGAAGATGC 58 NA InUTR Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203,ENSRNOT00000058422 3 2 2 81 11 81714672 81715000 TCATTCCACACCAGACTCTG 60 81714610 81714628 GTTGGTGTCATTGAACCGG 60 NA Rattus norvegicus 81 Calhm3 ENSRNOG00000026086 ENSRNOT00000036202 3 1 1 82 1 266934065 266934083 CTGTGTTGATGGTGGAGGA 59 266932316 266934019 AGAGGAGCACATGTACCTG 59 NA Rattus norvegicus 81 Rpn1 ENSRNOG00000046345 ENSRNOT00000073429 3 1 1 80 4 120013771 120013789 GACCACGTGTTTGATGAGC 60 120013832 120015098 TACCTGGATGTTCTTGGCTC 60 NA Rattus norvegicus 81 Ina ENSRNOG00000020248 ENSRNOT00000027417 3 1 1 81 1 266783901 266783919 AGCCAATGAATCCCTGGAG 60 266783964 266790179 AATGCTATCCTGGTAGCCG 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361,ENSRNOT00000077941 3 2 2 80 2 179602918 179607527 GATATTTCGCCAAGATCCCTC 59 179602858 179602880 GTAGGAGGAGATTATGATCAGGG 59 NA Rattus norvegicus 81 Olr69 ENSRNOG00000015657 ENSRNOT00000020969 1 1 1 60 1 168143648 168143669 CTTCTCCTATGCACTTATCCTG 58 168143609 168143627 GAGTCTTTCAGCCCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp1b4 ENSRNOG00000007059 ENSRNOT00000009329 1 1 1 80 X 124648560 124648580 TCAATTACTACCCGGAGTCAG 59 124648619 124649347 AGGTGTAGTTAACGTGAGTCAG 60 NA Rattus norvegicus 81 LOC100912022 ENSRNOG00000046099 ENSRNOT00000073972 3 1 1 60 4 1513782 1513802 GGTGACTGAATTCATTCTCGT 59 1513819 1513842 GAACAAAGGTATTTGGAGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554,ENSRNOT00000015775 1 2 2 80 3 94369351 94369371 CGTGATTGCAGAGTTATTCCT 59 94364096 94369314 GTCTGAGAAATGTATCGAATCTGG 60 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 3 2 2 80 1 220470241 220470896 ATATGGAGTCCACGGTTCC 59 220470937 220470958 TAACCACCACTTGTATCATCGA 59 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000035821,ENSRNOT00000085599,ENSRNOT00000077790 2 4 4 85 2 57867921 57868470 GGGACCTCCTCAAGTTCTG 59 57867854 57867873 AATCTGGTGATGCGTTTGTC 59 NA Rattus norvegicus 81 Pold1 ENSRNOG00000019681 ENSRNOT00000026797 3 1 1 80 1 100547229 100547331 TTTGAGATCCGGTTCATGGT 60 100547168 100547186 CCTCCGAACGTACTTTCCA 59 NA Rattus norvegicus 81 Derl3 ENSRNOG00000028243 ENSRNOT00000038623 1 1 1 81 20 13704560 13704584 ACTACTTCCTAGAAGATGTCTTTCC 60 13704375 13704525 AGTAGTAGCTTCAAGAAGCTAGG 60 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 3 1 1 65 4 180291607 180315485 GATCATTGTCTGCGTGGTG 59 180315513 180315532 TCGTCAACTTGGTATGAGAC 57 NA DesignNoJunction Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 1 2 2 80 1 222862262 222862280 GCCCTATGTACAGTCACTG 57 222862324 222869436 CTCCTGGGATTTCACTTGG 58 NA Rattus norvegicus 81 Olr530 ENSRNOG00000045546 ENSRNOT00000051533 1 1 1 60 3 74523869 74523890 CCAATGTATTTCTTCCTCACCC 59 74523908 74523929 TGATGACAGTTGAGTAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 1 2 2 80 11 74764623 74764642 GGAAATGATTGCTCAAGCAC 58 74760689 74764580 CTGAGAGTCACCTTCACTG 57 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 2 3 3 80 10 47108738 47108756 CCCTGGCTACATCCATACC 59 47108798 47110668 GTGTTCTTGTCTAGAGCTCCA 60 NA Rattus norvegicus 81 LOC690507 ENSRNOG00000015637 ENSRNOT00000071772 2 1 1 80 3 149810739 149811001 ACTCACAAGGTCTGAGCAC 60 149812146 149812164 TTCCTTGTGACTTCAGCCA 59 NA Rattus norvegicus 81 Cnot6l ENSRNOG00000002075 ENSRNOT00000002843 1 1 1 80 14 15086649 15089357 GAATTAGAAATCTCGGGTAGAGTG 59 15089396 15089414 ATTTAGGTGCAGTGCTGTC 58 NA Rattus norvegicus 81 Tmem260 ENSRNOG00000013353 ENSRNOT00000017871 1 1 1 80 15 25351027 25351048 GATTGTATTCAACCCAGAGGAG 59 25351086 25353395 GGATCAAATCTTCCGTATTCCT 58 NA Rattus norvegicus 81 Kcng4 ENSRNOG00000015746 ENSRNOT00000021271 3 1 1 93 19 52280113 52280131 CTCTCCGTTCTCTTCGTGG 60 52273738 52280056 TAGCGCATTCTCCCTTGTC 60 NA DesignRelaxed Rattus norvegicus 81 Grp ENSRNOG00000016999 ENSRNOT00000022845 1 1 1 123 18 61563703 61569954 GGCTGTAGGACACTTAATGG 58 61570040 61570058 ATTCCTTGCAGCTTCTTCC 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928,ENSRNOT00000008976 2 3 3 80 13 48128374 48134923 GAGCTTTATTCGGTCATGAAGAC 60 48128316 48128337 CTCTGCTTCCTTTAGTTTGCTC 60 NA Rattus norvegicus 81 Dner ENSRNOG00000016640 ENSRNOT00000022564 3 1 1 80 9 91973688 91984621 GTGAAATCCACCTGCAGTG 59 91973626 91973645 TGATGATGTAGAGGGAGTGC 59 NA Rattus norvegicus 81 Map2k3 ENSRNOG00000006612 ENSRNOT00000008679 2 1 1 80 10 47197527 47197546 TCAACCCTGAGCTGAATCAG 60 47197589 47200479 TGGCCATCTCAATCATGGT 59 NA Rattus norvegicus 81 Mnat1 ENSRNOG00000007267 ENSRNOT00000010163 1 1 1 80 6 96070592 96073112 TTAAAGCTGACTCGGGAGC 60 96073155 96073174 AAACAGTCGTCGTTGTTCAC 59 NA Rattus norvegicus 81 RGD1559732 ENSRNOG00000043019 ENSRNOT00000048642 1 1 1 80 10 45262297 45263257 GAAGATGAGCTCTTTCATGTGAG 60 45263296 45263315 TTTCTGATCTTCGGACACCA 59 NA Rattus norvegicus 81 Armc2 ENSRNOG00000026217 ENSRNOT00000031047 2 1 1 80 20 46804315 46804333 TGTCTCTGCACAGTGATGG 60 46798405 46804275 GGTTAGTTTGCTAAAGACTCTGG 60 NA Rattus norvegicus 81 Ccdc158 ENSRNOG00000002204 ENSRNOT00000003009 3 1 1 80 14 16956786 16956807 AAGATATAATACAGCGCCAGGA 59 16956848 16957928 GGCCCTGAAGTTCTTTCAC 59 NA Rattus norvegicus 81 RGD1564319 ENSRNOG00000038050 ENSRNOT00000057901 3 1 1 60 3 65672239 65672258 ACTTAGCATTTGTGAAGCCT 58 65672276 65672299 GCCATCTGTATAAGATAGTTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc4c ENSRNOG00000029798 ENSRNOT00000044595 2 1 1 92 3 86792843 86817259 CCCTAATGGAGAACAAGACTG 58 86817313 86817331 TCTGCTGTGGATGTAAGGT 58 NA InUTR Rattus norvegicus 81 Slc9a3 ENSRNOG00000015159 ENSRNOT00000020711 3 1 1 80 1 31748871 31748892 AAGTCCATGTCAATGAAGTCCT 60 31746508 31748831 TGTACAAGACCACAGTCACC 60 NA Rattus norvegicus 81 Areg ENSRNOG00000002754 ENSRNOT00000003703 1 1 1 80 14 18527213 18527233 TCAGAACTTCTGCATTCATGG 59 18526521 18527174 AAGTAATCCTGATGACAATGGC 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893,ENSRNOT00000088292 3 2 2 80 1 5261419 5261541 CATTGACCAAATCCAGATCCC 59 5261582 5261601 TGGTAGAAATGCCTCTCCAC 60 NA Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000088264,ENSRNOT00000066546 3 2 2 80 15 18806294 18806312 AAAGCTATCAAGCACACCA 57 18806007 18806250 TTGTCCAATGTTGACCCTG 58 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000077689,ENSRNOT00000020733 3 2 2 94 10 14252822 14253023 GAAGTGCATAGGAGTGGCT 60 14253080 14253099 GAATGACCTTCATGCTGCTC 59 NA Rattus norvegicus 81 Rn60_X_0559.1 ENSRNOG00000051159 ENSRNOT00000076038 2 1 1 60 X 55635807 55635825 AAGCCCTTCATTTGCTCTC 58 55635847 55635867 CTATGAAGTCATCGGTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab40b ENSRNOG00000036661 ENSRNOT00000054917 2 1 1 83 10 110558974 110559456 GGCCAAGCAAAGTACTGAG 59 110558909 110558927 GGAGCTTGTCTACCAGGTG 60 NA Rattus norvegicus 81 Scaf1 ENSRNOG00000056946 ENSRNOT00000081430 1 1 1 80 1 100998367 100999838 CTGACAAGTATCTGAAGAAGCTG 59 100998309 100998329 TCTGGTAGTATGGCTTGATGG 59 NA Rattus norvegicus 81 Gch1 ENSRNOG00000011039 ENSRNOT00000014821 2 1 1 80 15 23947041 23947061 CTAACAAGCAAGTCCTTGGTC 59 23936824 23937816 GGCGTTCTTGAACTTGTAGTC 60 NA Rattus norvegicus 81 Gch1 ENSRNOG00000011039 ENSRNOT00000014821 3 1 1 80 15 23949803 23968543 AGGAGACCATCTCAGATGTC 58 23949742 23949763 TGTCAATGTCCTTCACAATCAC 59 NA Rattus norvegicus 81 Slmo1 ENSRNOG00000017954 ENSRNOT00000024144 3 1 1 80 18 63211684 63213423 TGTTCCACCAATATCACGC 58 63213466 63213485 TTCAGGGTTCTCTGGATGAG 59 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546,ENSRNOT00000089456 2 2 2 80 1 256590717 256590736 AACAGAAGTCCATGAAAGGC 59 256588904 256590674 TCATCTCCACTTTCCCAGC 59 NA Rattus norvegicus 81 Trdmt1 ENSRNOG00000026132 ENSRNOT00000038651 1 1 1 80 17 80832027 80832046 TGTCAATGCTTAAACTGCGA 59 80827137 80831986 CAGGAAACCCAAATTCTGGAG 59 NA Rattus norvegicus 81 LOC687560 ENSRNOG00000050028 ENSRNOT00000071344 1 1 1 80 19 53468837 53468857 CTACCCGTTAGCTTCAATCTC 58 53468057 53468795 GTCCCAGAACAAATGACGA 58 NA Rattus norvegicus 81 Rufy4 ENSRNOG00000032991 ENSRNOT00000083595 2 1 1 80 9 81414888 81414906 TGAGAAGGAGCTTGAAGGA 58 81414949 81420180 TGGTCCTTCTCCTGAATCAG 59 NA Rattus norvegicus 81 Ptma ENSRNOG00000018584 ENSRNOT00000025093 1 1 1 80 9 93548149 93548172 GACAATGAGGTAGATGAAGAAGAG 59 93548209 93548450 ATCTTCTTCCTCACCATCACC 60 NA Rattus norvegicus 81 Tpcr12 ENSRNOG00000048210 ENSRNOT00000072317 3 1 1 60 10 34403250 34403269 ATGATCACATACATGCGACC 58 34403292 34403310 CAGAGACCACTTTGTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npffr2 ENSRNOG00000003067 ENSRNOT00000004153 2 1 1 81 14 20149784 20153981 ATAGCCGTGGACAGATTCC 59 20149721 20149740 TCACGATCATGACAAAGGCT 60 NA Rattus norvegicus 81 Supt7l ENSRNOG00000004927 ENSRNOT00000006543 1 1 1 80 6 26248004 26249530 TGCTACAGATTAGTAAGCAGC 58 26249571 26249590 CAGGCTTAGTGTCTTCTGTG 58 NA Rattus norvegicus 81 Rps3a ENSRNOG00000011893 ENSRNOT00000016329 1 1 1 80 2 185443627 185443646 GTCTGACTAACTTCCATGGC 58 185441677 185443585 CTTCAATCATGGTCTGCCAC 59 NA Rattus norvegicus 81 Mir216a ENSRNOG00000035514 ENSRNOT00000053637 3 1 1 60 14 113112156 113112174 CTGGCAACTGTGAGATGTC 59 113112194 113112216 CTGTTTAGCATAATCCCAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc4 ENSRNOG00000001816 ENSRNOT00000002487 1 1 1 80 11 81370755 81370775 CGTGGAATACAAGTAGTCCGA 60 81370817 81371745 TGGTTTCCCATCTGAACGA 59 NA Rattus norvegicus 81 Efcab5 ENSRNOG00000022536 ENSRNOT00000031618 3 1 1 80 10 63066323 63066342 CTCGGTGTAGCAGAAATCCA 60 63066382 63067385 GCATTTAAAGAGGAAGTCCCTG 59 NA Rattus norvegicus 81 Treh ENSRNOG00000052010 ENSRNOT00000090203 2 1 1 80 8 48993374 48993394 TCCCTGATCTATTCAGAGCAC 59 48993436 48993590 CACCCAGTATGAGTCCCAG 59 NA Rattus norvegicus 81 Ppp1r2 ENSRNOG00000001733 ENSRNOT00000002361 2 1 1 80 11 73022101 73022120 GGCAACATATCATCCAGCTG 59 73022158 73025622 CCTATCATATTGTGGTATGGAGTG 59 NA Rattus norvegicus 81 Nfic ENSRNOG00000004505 ENSRNOT00000006168 1 1 1 80 7 11171298 11171318 CGGAGACTACTACACATCACC 60 11171360 11172769 GATGAGATGCCTCCTTCCA 59 NA Rattus norvegicus 81 Fpr-rs4 ENSRNOG00000043056 ENSRNOT00000066769 3 1 1 60 1 86073626 86073645 TCTGAACTTGGCTTTGAGTG 59 86073664 86073686 TGAGATGATCTGAAGTGGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747 3 1 2 82 12 44933978 44933996 AGACATCCACCATTCTGGC 60 44934040 44935822 TTAAACCCTCTCCTCCAAGAC 59 NA Rattus norvegicus 81 Olr79 ENSRNOG00000015764 ENSRNOT00000021102 3 1 1 60 1 168245525 168245549 TACTTCTTCTCCTGTCCTATATCCT 60 168245566 168245585 GCTTTGGAGGCTATACTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 1 2 2 93 3 175477710 175477730 GGTGGTAGACTACCTACTGTG 59 175476319 175477655 GTAGGAGACAGCTCGAGTG 59 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000078451,ENSRNOT00000001085 2 2 3 142 20 3399671 3399689 CAGAGGTCGCTCTATGTGG 60 3399086 3399104 AGGACAAAGCAGAGGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Cldn16 ENSRNOG00000055138 ENSRNOT00000083319 3 1 1 84 11 77684546 77685668 TCTTCAAAGATGTTGGACCTG 58 77684482 77684500 GATTTGGCCATGGAAACAC 58 NA Rattus norvegicus 81 Flrt2 ENSRNOG00000003732 ENSRNOT00000004955 3 1 1 80 6 119520075 119606779 AAGGCTACCAGATTACTGACTC 59 119606816 119606838 CCTTCTTCTATAATGAGTCAGGC 59 NA InUTR Rattus norvegicus 81 Olr608 ENSRNOG00000005950 ENSRNOT00000007796 2 1 1 60 3 76278901 76278922 CAGAATAAATCCCAAACTCCAC 58 76278862 76278882 AACAAAGGATAAGTGGCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tardbp ENSRNOG00000012455 ENSRNOT00000049822 2 1 1 80 5 165434733 165436235 AAATTCTAAGCAAAGCCCAGAC 60 165434674 165434692 TCAGCAGTCATGTCCTCTG 59 NA Rattus norvegicus 81 Pmp2 ENSRNOG00000022707 ENSRNOT00000032059 2 1 1 89 2 93829080 93829098 GAAGCAAGTGCAGAAGTGG 60 93829146 93830482 CCCTTCATTATACATTCCACTACC 59 NA Rattus norvegicus 81 Ndufa6 ENSRNOG00000008569 ENSRNOT00000011484 1 1 1 80 7 123583290 123583922 CTGGTCATTAAGGGAAAGATGG 59 123583231 123583251 ATGGAAGAACCGCATAATGTG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 2 2 2 80 2 248724343 248724495 CCCACGCAATATAGTTGATCG 59 248724535 248724555 TCATTAGCTCTTCCCTTCAGG 59 NA Rattus norvegicus 81 Cyp2d4 ENSRNOG00000032261 ENSRNOT00000011880 3 1 1 82 7 123601771 123601789 CAAGAAGTCACTGGAGCAG 58 123601627 123601727 TGAAAGGGAATCCACTATGGT 59 NA Rattus norvegicus 81 Vsig8 ENSRNOG00000008668 ENSRNOT00000011539 1 1 1 66 13 90949381 90949700 AAAGTCTCAGACTCCCAGC 59 90949730 90949748 CTAGCATGAGCAAAGAGCC 59 NA DesignRelaxed Rattus norvegicus 81 Arf4 ENSRNOG00000012623 ENSRNOT00000017692 3 1 1 80 16 2351780 2353989 GAACAGAACATGGTATGTCCA 58 2354031 2354049 TCATTTGACAGCCAATCCA 57 NA Rattus norvegicus 81 Ifnlr1 ENSRNOG00000033984 ENSRNOT00000049459 2 1 1 103 5 154051465 154051483 TGTCAACGCTACCTACCAG 59 154051549 154054468 GAAACAGGGTCTTGCTTCTC 59 NA Rattus norvegicus 81 AABR07030053.1 ENSRNOG00000048453 ENSRNOT00000071102 3 1 1 96 10 64930083 64930101 GCAAGGACTAGAGCTTCTC 57 64930162 64930180 TACCTTCCTTCTGGTCACC 58 NA DesignNoJunction Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905,ENSRNOT00000080600 3 2 2 80 2 251011315 251011334 AAGTGTACAGACAGAGGCTG 60 251011376 251017725 ACTTGGCTTCCTGATCTCTG 60 NA Rattus norvegicus 81 Hbg1 ENSRNOG00000030879 ENSRNOT00000039946 1 1 1 80 1 168994171 168994192 GCTGCTATCATAAGCATATGGG 59 168993982 168994132 GTAAACAATCAGGAGCCTTCC 59 NA Rattus norvegicus 81 Rn60_X_0730.2 ENSRNOG00000054824 ENSRNOT00000087822 1 1 1 60 X 72072652 72072671 TGCTTCAACATTGGGAAGAG 59 72072611 72072632 CTATAGTCAAGGTACAGTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab9b ENSRNOG00000047960 ENSRNOT00000074140 3 1 1 148 X 107536279 107542371 TCCCATTGTGTTGGAACTC 58 107534962 107534980 GAGAAGGGATTTCCCACTC 57 NA InUTR Rattus norvegicus 81 LOC100360137 ENSRNOG00000043400 ENSRNOT00000068441 2 1 1 80 4 79015541 79015562 AAAGGAGGAACAGAAGAAACTC 58 79015332 79015502 TTCTTAATTCCACCTGTAGCC 58 NA Rattus norvegicus 81 Foxe3 ENSRNOG00000007770 ENSRNOT00000010208 2 1 1 70 5 133725427 133725445 CTCTTATCGCTATGGCCCT 59 133725375 133725393 GATGAAGCGGTAGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_1636.2 ENSRNOG00000055662 ENSRNOT00000084019 3 1 1 60 4 163558964 163558984 GTTTAGTTTCAGCTTCAGCCC 60 163559006 163559024 ATCAAAGCCAAAGTTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 3 2 2 80 2 197740083 197740102 ACGCTCAAACACATTAAAGC 58 197740145 197747749 GTTCCATGTCTCACCAGTG 58 NA Rattus norvegicus 81 Cmpk2 ENSRNOG00000007690 ENSRNOT00000052003 2 1 1 80 6 45689154 45691581 TGTTATCGTAGACAGGTACTGG 59 45691622 45691640 GGTAGGTACTGTAGGCCTC 58 NA Rattus norvegicus 81 Cxcl6 ENSRNOG00000002843 ENSRNOT00000003823 2 1 1 83 14 18861777 18861912 CCAAGGTGGAAGTCATAGCT 60 18861713 18861734 TGACTTTCTTTATCAACGGAGC 59 NA Rattus norvegicus 81 Slc25a42 ENSRNOG00000020345 ENSRNOT00000027615 3 1 1 85 16 20981083 20981493 CCCAAGGAGATGTACAGCA 59 20981541 20981560 GTGAACCCGAAATAAAGGGT 58 NA Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000075324 1 1 2 101 4 55398566 55398584 TCTGTGTCCATCATGGTGG 59 55398221 55398502 TATGGTTGTCAAGATTGCCG 59 NA Rattus norvegicus 81 Lgals8 ENSRNOG00000018046 ENSRNOT00000044662 2 1 1 81 17 66495411 66500715 CAAGCTCCATTTGAGCCTG 59 66495348 66495367 TTCTCCTTTAACGACAACGG 58 NA Rattus norvegicus 81 Olr563 ENSRNOG00000037833 ENSRNOT00000057478 2 1 1 60 3 75478297 75478316 ACATGCTTCTTCCTTATGCT 57 75478339 75478357 CATAGGACATCACAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC107446.1 ENSRNOG00000023090 ENSRNOT00000030413 1 1 1 85 3 57743105 57743123 CTTAACTCTGCGTCTGCAG 59 57743038 57743056 CTAAATGGAGGCAACGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps7 ENSRNOG00000008551 ENSRNOT00000011333 2 1 1 84 6 47899983 47900001 GTGTGAAACTGGATGGCAG 59 47899625 47899936 AAAGTTTCGACCTTGTGCTC 59 NA Rattus norvegicus 81 Gphb5 ENSRNOG00000021885 ENSRNOT00000031076 3 1 1 107 6 98380684 98382862 GTGAGACCTGGGAGAAACC 60 98380595 98380613 CACAGTTAGGCAGCTTCAC 59 NA Rattus norvegicus 81 RGD1560303 ENSRNOG00000025799 ENSRNOT00000004344 1 1 1 60 1 14116484 14116502 ACTCGCTACTTAATCGGGT 58 14116442 14116463 ATACCTCTAGCTTCATCTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a13 ENSRNOG00000009957 ENSRNOT00000013817 1 1 1 80 4 31651634 31651653 ACAACATGGAGCTCATTAGG 58 31650933 31651592 CAAACTCCTCCTTAGTCACC 58 NA Rattus norvegicus 81 Megf8 ENSRNOG00000052687 ENSRNOT00000077313 3 1 1 80 1 82226018 82226036 GTGTCTCCAGGAAAGAGCT 59 82226080 82226552 CCCAGGCTTCAATCTCCTC 60 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312,ENSRNOT00000090540 1 2 2 80 2 84528505 84528524 TGTGGCTACACAGAAGACTG 60 84526371 84528464 TATTGTTTGTGGCTACACTGC 59 NA Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000039998 3 1 2 65 20 3691053 3691071 CTGATCTGTCTGGGTCTGC 60 3690795 3690814 GGAGACTTTCTCCTCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Matk ENSRNOG00000020431 ENSRNOT00000027730 3 1 1 81 7 11326602 11326707 GGCTGTGATGACAAAGCTG 60 11326539 11326557 CATGACAATGTACAGGCCG 59 NA Rattus norvegicus 81 Anlnl1 ENSRNOG00000018113 ENSRNOT00000024361 3 1 1 84 17 66550897 66551127 CCATTAGCAACAAGTACTGC 57 66551172 66551192 CATTGGAAACATCATTCAGGG 58 NA Rattus norvegicus 81 Fam69b ENSRNOG00000004532 ENSRNOT00000006186 1 1 1 80 3 4087810 4087828 GCTGGATGGTCTATGTGCA 60 4087872 4089860 ACTGGTCACAGATCACCAC 59 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 2 2 2 181 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885043 171885061 AAAGCTGAAATGCCGAGTG 59 NA Rattus norvegicus 81 Rn60_X_0683.2 ENSRNOG00000051200 ENSRNOT00000076082 1 1 1 60 X 67386536 67386557 CAATGTCTGATCTAATGTCGTG 57 67386578 67386596 GTTGAGAAGGCTGAAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp3a9 ENSRNOG00000046643 ENSRNOT00000073099 2 1 1 80 12 19088256 19088275 CCTTTGCTCTTCACAAAGAC 57 19075887 19088216 CCTGATTCTTCTTGTTGTACCT 58 NA Rattus norvegicus 81 Cfl1 ENSRNOG00000020660 ENSRNOT00000015962 2 1 1 80 1 220872493 220872708 AAACTGACAGGAATCAAGCAC 59 220872750 220872768 TAGTTTCTCTGCCAGGGTG 59 NA Rattus norvegicus 81 Peli2 ENSRNOG00000012363 ENSRNOT00000016629 3 1 1 92 15 25075943 25077623 ATATTCCTCGGCGAGAAGG 59 25077679 25077697 TCTTGGGTGCATTACCAGG 60 NA Rattus norvegicus 81 Olr661 ENSRNOG00000046340 ENSRNOT00000008077 2 1 1 60 3 77482615 77482634 GTCGCAAAGCTCTTTCTACC 59 77482574 77482593 GGCAAGAAGAACATGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glt8d2 ENSRNOG00000033579 ENSRNOT00000051181 3 1 1 80 7 27186273 27187279 CGTACAAGGTGACATCCAG 58 27187320 27187341 AAATCACAGTCATCTGAGAAGG 58 NA Rattus norvegicus 81 Zfp608 ENSRNOG00000023197 ENSRNOT00000033254 2 1 1 81 18 49841799 49891343 AACAGAAGAAGGTGTCCTAGTG 60 49841739 49841757 ATGCTTGGTGCAGTCTAGG 60 NA Rattus norvegicus 81 Plau ENSRNOG00000010516 ENSRNOT00000014273 2 1 1 80 15 3647114 3647633 CCATAATGACATAGCCTTGCTG 60 3647055 3647074 CAGATGGTCTGTATGGTCCT 59 NA Rattus norvegicus 81 Sytl2 ENSRNOG00000049878 ENSRNOT00000042163 2 1 1 80 1 156345731 156349968 TCAGACCCATATGTAAAGACCT 59 156345672 156345691 GGTCTTCTTCACTACAAGGG 58 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 1 2 2 80 2 243429718 243431340 GGTCAACTGGAAGGATATTCAC 59 243431380 243431399 GACGTCAGATAAACCAGGTC 58 NA Rattus norvegicus 81 Fbxo38 ENSRNOG00000019063 ENSRNOT00000025790 1 1 1 80 18 57847301 57847321 CCTGTATCAAGTATCTGGCGA 60 57845683 57847264 TCCATCTAGAGTGATCTGATATCC 59 NA Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000076244 1 1 2 94 12 22452859 22452968 TTCAAGTGAAGGTCGTGGT 59 22453026 22453044 TATGAACTCCAGCAGCTCC 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 1 5 6 80 20 3305442 3306023 CGATGATGGAAGACAAATCTGAC 60 3306059 3306081 CACAATGGTCTTCATATCGACAG 60 NA InUTR Rattus norvegicus 81 RGD1305928 ENSRNOG00000057264 ENSRNOT00000087338 2 1 1 82 7 140248948 140265589 AAGAAACAAACCAGAAGGATGC 60 140265627 140265650 GTTCTGGTGGACAGAATAATTACC 60 NA Rattus norvegicus 81 Adam23 ENSRNOG00000012424 ENSRNOT00000040525 3 1 1 80 9 70135721 70165609 CAGAAACACAATAAGGCTGTC 58 70165649 70165669 GAGGTCAAGAATGAACTTGGA 58 NA Rattus norvegicus 81 LOC681470 ENSRNOG00000049477 ENSRNOT00000071206 1 1 1 60 13 91768300 91768318 AGGTTTCTCCAGCTTTCAG 57 91768342 91768360 GTACAAGGCCAGAAAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 3 2 2 80 1 214011977 214012286 GTTACGCTTGTACTTCATCCT 58 214012326 214012346 TGATAGTAGACATAGGCCAGG 58 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000010746 ENSRNOT00000014493 2 1 1 81 4 147715645 147717114 GTGCAACAAATCTTACTGTGC 59 147715584 147715602 CTGTGCTGCTCTTTCTACG 59 NA Rattus norvegicus 81 Rilp ENSRNOG00000003784 ENSRNOT00000005039 3 1 1 99 10 63661532 63661912 CAGAATCCAGAATTTCTTTGGC 58 63661972 63661990 TTCTCCTTCCTGTGTCCTG 59 NA Rattus norvegicus 81 Kpnb1 ENSRNOG00000009275 ENSRNOT00000012376 2 1 1 80 10 85113996 85115003 CTGCCCTCTTTGCAATCAC 60 85113934 85113953 TGGACCAGAACTCTATCCCT 59 NA Rattus norvegicus 81 Chordc1 ENSRNOG00000026643 ENSRNOT00000030569 2 1 1 102 8 17425046 17432186 GATGCCCTAAAGGGTTGGT 60 17433159 17433181 GCTTCTCACTATTATGCCTACCT 60 NA Rattus norvegicus 81 Odam ENSRNOG00000023372 ENSRNOT00000037003 3 1 1 80 14 21845430 21846693 CAACAAGCAGAACCTGGTG 59 21845368 21845386 AGGAGTTTCTGGAGCTGTG 59 NA Rattus norvegicus 81 Dynlrb1 ENSRNOG00000025715 ENSRNOT00000067854 3 1 1 80 3 150771304 150771323 GTGGAGGAAACACTCAAGAG 58 150771366 150777945 GATGGGAATGCCTTCTGTG 59 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 2 2 2 80 1 69817726 69817746 TGTCTAGCATCACCTTTCCAG 60 69817788 69818577 TTCCCTGAACAACACCCTG 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 3 2 2 80 1 69817784 69818573 TCAACAGGGTGTTGTTCAG 58 69818617 69818635 ATGAAGCCATAAAGGGCTG 58 NA Rattus norvegicus 81 Pfkp ENSRNOG00000017163 ENSRNOT00000023252 2 1 1 80 17 68539671 68539690 TCATTGTGTCTGAAGGAGCA 59 68537947 68539629 AATTTGTCACCACAAGCTCC 59 NA Rattus norvegicus 81 Nt5dc1 ENSRNOG00000000546 ENSRNOT00000000657 3 1 1 80 20 41127129 41127148 ACAAACGCATTAAAGCCAGG 60 41119959 41127089 CTTCTCCTCATCATTCTCAAGC 59 NA Rattus norvegicus 81 Zscan21 ENSRNOG00000039234 ENSRNOT00000001810 2 1 1 83 12 19268713 19269438 GGACTGCAGGTCTCATCTC 60 19269484 19269503 GCTTAAGGACTCCATTGCAG 59 NA Rattus norvegicus 81 Bglap ENSRNOG00000019607 ENSRNOT00000026530 1 1 1 91 2 187742038 187742256 CAACAATGGACTTGGAGCC 59 187741965 187741983 CTAGCTCGTCACAATTGGG 58 NA Rattus norvegicus 81 Bglap ENSRNOG00000019607 ENSRNOT00000026530 3 1 1 133 2 187742038 187742256 CAACAATGGACTTGGAGCC 59 187741923 187741941 CATAGATGCGCTTGTAGGC 59 NA Rattus norvegicus 81 Dlg2 ENSRNOG00000022635 ENSRNOT00000055401 3 1 1 80 1 157206380 157206400 TGGTGTGATTGATTCCAAAGG 59 157244786 157254198 TCTTCTTGTCCTCTCAGAGTC 59 NA Rattus norvegicus 81 Tmprss12 ENSRNOG00000031099 ENSRNOT00000041938 3 1 1 87 7 141955026 141955044 CTTGTGCACGTATGTGGTG 60 141955097 141958147 ACTTGAGAGGATCGCTAGC 59 NA Rattus norvegicus 81 Noxred1 ENSRNOG00000047312 ENSRNOT00000074037 1 1 1 80 6 111266847 111266865 CGTTACCGAGGATTGATGG 58 111260861 111266803 CAGCAGTTTGCTCAAATCG 58 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 2 2 2 80 19 55417369 55422943 TGCTCATGGACGATATGGG 59 55417307 55417326 CCATCCGGTCTAAATTTGGG 59 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 1 2 2 80 X 68352864 68352884 GGTATGAGAAAGAGACCAGGA 59 68347819 68352822 TTAAGTCCACAGGTCCCTG 59 NA Rattus norvegicus 81 N4bp2l1 ENSRNOG00000059322 ENSRNOT00000085295 3 1 1 96 12 548336 549518 GAGTTAGCAAGAAGAAACATCC 58 548261 548279 GAAGGACACTGTGAAAGGT 57 NA Rattus norvegicus 81 Gja1 ENSRNOG00000000805 ENSRNOT00000001054 1 1 1 79 20 37876807 37876827 CGGCTTCACTTTCATTAAGTG 58 37886181 37886199 ACCTTGTCCAGAAGCTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mob1b ENSRNOG00000010996 ENSRNOT00000014650 3 1 1 80 14 20970326 20971839 GTTGCAGTTAACACTGTGGA 59 20970265 20970285 GCTCTCCTCTGTACAGAAGTC 60 NA Rattus norvegicus 81 Fshb ENSRNOG00000004898 ENSRNOT00000006512 1 1 1 80 3 98089746 98091282 CTGCTACACCAGGGATCTG 60 98089684 98089702 TACACCAGCTCCTTGAAGG 59 NA Rattus norvegicus 81 Stk4 ENSRNOG00000013529 ENSRNOT00000066657 3 1 1 80 3 160484444 160491314 CAGGCCAACTTACAGATACCA 60 160491354 160491374 CCTGAATAACTTCAGGAGCCA 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 5 6 80 20 3573452 3573906 CACAATCAGCTACCCTATGC 59 3573949 3573967 ACAAAGTTAAGGGTGGCCA 60 NA Rattus norvegicus 81 Chga ENSRNOG00000052549 ENSRNOT00000090857 2 1 1 92 6 126437448 126437466 GTGTCCTGGAGGTCATCTC 59 126437522 126438268 CCCTCTCATCTCCTTGGAG 59 NA Rattus norvegicus 81 Ptprq ENSRNOG00000056915 ENSRNOT00000081885 2 1 1 80 7 49787759 49788441 TCCATCAAGCCAATAAGCA 57 49787697 49787718 CTCTTGAAACTTTAGGTTGCTG 58 NA Rattus norvegicus 81 Emc8 ENSRNOG00000017654 ENSRNOT00000023855 1 1 1 80 19 54238983 54245485 CTCACCCTAATTGACTCATGG 58 54238923 54238943 ATCCTTCACACGTTCATTAGC 59 NA Rattus norvegicus 81 AC097912.1 ENSRNOG00000053213 ENSRNOT00000085902 3 1 1 60 4 71791392 71791411 CCCTTACTGTCTTCATCACC 58 71791431 71791452 GTACTAGAAATTATCAGGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991,ENSRNOT00000002705 1 2 5 80 14 22252220 22257634 AACTCTAGGAAGACCCACC 58 22257676 22257696 TCAATATCCCAATACGTTCGG 58 NA Rattus norvegicus 81 Eml5 ENSRNOG00000004207 ENSRNOT00000057601 3 1 1 80 6 122838866 122838885 AATAGATGACAGCCACACCA 59 122837767 122838825 TTATCTTTACTGCCTCTTGCC 58 NA Rattus norvegicus 81 Hdac8 ENSRNOG00000003122 ENSRNOT00000004224 1 1 1 80 X 72365002 72365021 TTCAACATCTCCAGAAGGTC 57 72363351 72364959 GGCAGTCATAACCTAGTCC 57 NA Rattus norvegicus 81 Cyb5a ENSRNOG00000015205 ENSRNOT00000020446 1 1 1 80 18 81694987 81713717 CAAGTTTCTCGAAGAGCATCC 59 81713757 81713777 TCCTCAAAGTTCTCAGTAGCA 59 NA Rattus norvegicus 81 Hephl1 ENSRNOG00000056092 ENSRNOT00000081616 3 1 1 80 8 13642412 13642432 GTTTACTTGGCATCCCTTCAG 59 13639249 13642373 TAGCCATTAATAGCATGCATCC 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 1 2 2 80 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736482 15736500 GACAGAGTCCTTCGGACAC 60 NA Rattus norvegicus 81 Olr363 ENSRNOG00000053382 ENSRNOT00000083727 1 1 1 60 1 230269377 230269395 TCCCTTGCACTATGCTACC 59 230269415 230269437 GGAACCTAAAGAAAGACAGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910090 ENSRNOG00000046441 ENSRNOT00000071682 3 1 1 60 4 161213608 161213626 AGTTGAGAAAGCATTGGGT 57 161213648 161213668 GAGCTTGAATCCCATACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899,ENSRNOT00000018393 2 2 2 80 5 160397233 160397251 CTGGTGGTTCATCAAGGTC 58 160395329 160397189 CCAGAATCTCCGTTACAGG 57 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601,ENSRNOT00000055103 3 2 2 80 1 188302930 188302949 CTGGGATTTCACTGTCACTC 58 188302991 188304552 GACAGGTTCTCCCTGATCTC 59 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639,ENSRNOT00000022060 2 2 2 80 1 151439677 151630856 TACTTCTGGGCAGTGATGG 59 151630899 151630918 TTGTAATTCCACCGACAGCT 60 NA Rattus norvegicus 81 Atp5g3 ENSRNOG00000001596 ENSRNOT00000058234 2 1 1 80 3 60811479 60811922 ATTGGCTATGCCAGAAACC 58 60811417 60811435 CATAGCTTCAGACAAGGCA 58 NA Rattus norvegicus 81 Chrm5 ENSRNOG00000006397 ENSRNOT00000008387 2 1 1 122 3 103968286 104018319 CAACTCCTGCCAGATATTGG 59 103968183 103968203 TGCTTTCATTGTAAGACTCCC 58 NA InUTR Rattus norvegicus 81 LOC681282 ENSRNOG00000034107 ENSRNOT00000041750 1 1 1 94 7 118024224 118024556 GAAACAGAAAGAGCAGGCTG 60 118024613 118024631 CAAACAAGGAGCGCATCAG 60 NA Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 2 1 1 227 5 166870243 166871269 GCTTTCTGAAGTCACAGGA 57 166871460 166871478 GGTAGATCTCCTCCAAGGA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 3 1 1 228 5 166870243 166871269 GCTTTCTGAAGTCACAGGA 57 166871461 166871479 AGGTAGATCTCCTCCAAGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tpsab1 ENSRNOG00000024181 ENSRNOT00000024767 2 1 1 84 10 14701827 14702743 CAATGATGTAAGCCTGCCA 58 14701761 14701780 ATACTTCAAGTCACAGAGGC 57 NA Rattus norvegicus 81 AABR07016841.1 ENSRNOG00000006051 ENSRNOT00000008154 2 1 1 60 15 1055157 1055179 CTGGAGAAGAGAATAAATGCTGG 59 1055197 1055217 GTTACAGATGACAGAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam155b ENSRNOG00000038066 ENSRNOT00000057920 2 1 1 80 X 69601808 69602217 TTATCTGCACAGGATTGATCGA 60 69602258 69602276 ACTCACAAGAGACCCACTG 59 NA Rattus norvegicus 81 Tas2r107 ENSRNOG00000005646 ENSRNOT00000007453 3 1 1 60 4 165773544 165773564 TTGTATCCCTGATTACCTGCT 59 165773504 165773523 ATTTGCCTGATGTGTCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr15l ENSRNOG00000049162 ENSRNOT00000073292 2 1 1 60 10 84871802 84871820 TGATGCAGGAGATCCTCAC 59 84871842 84871862 GTTCTTGTCCACAATCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0685.1 ENSRNOG00000051038 ENSRNOT00000076502 1 1 1 118 X 67601141 67601273 AAGTATGGAGGTTCTTTCGG 57 67601042 67601060 TTATCGTCTGGTCCTTCCA 58 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 3 2 2 108 2 54819098 54823567 TTAAAGCAGGAAGTTCCACG 59 54819009 54819028 AGAGCTCTGCTATTTCTGGG 59 NA Rattus norvegicus 81 Rn60_X_0740.1 ENSRNOG00000051267 ENSRNOT00000076553 1 1 1 60 X 73140898 73140917 TGGAGCTGAAGGAAGAATGG 60 73140939 73140958 CTGTCATCTTCGGGTAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000079069,ENSRNOT00000083012 3 4 5 94 1 15845136 15845988 GGGAGACTGGCTTCATCAG 60 15846046 15846064 ATGGTCTGGTTCCACACTC 59 NA Rattus norvegicus 81 Gid8 ENSRNOG00000010180 ENSRNOT00000013609 2 1 1 80 3 176219781 176219802 GCTCAACAACTTACATGTTCAG 58 176219843 176221055 GCTTCCTTAAAGCCCTCTG 58 NA Rattus norvegicus 81 Mfsd1 ENSRNOG00000013790 ENSRNOT00000018489 3 1 1 80 2 164754556 164754575 GCTGTGAGCTGGTTTAAAGG 60 164754618 164757364 CACCGTGCTTCCAATTCTG 60 NA Rattus norvegicus 81 Irs3 ENSRNOG00000001389 ENSRNOT00000001874 1 1 1 109 12 22123501 22123519 CAGCAAACATGGTACAGCG 60 22123762 22123780 GCGAAGATCCAAGACTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Arrb1 ENSRNOG00000030404 ENSRNOT00000043554 3 1 1 80 1 164560447 164560467 CAGTATGCAGACATCTGTCTC 58 164560509 164562011 TGCCACAGTATCATCAGCT 59 NA Rattus norvegicus 81 LOC100909879 ENSRNOG00000032580 ENSRNOT00000048046 2 1 1 80 2 87418807 87418826 CCAGAAAGGAACAGTAGAGC 58 87418868 87419518 ATATCTGCTCCTGCATACAC 57 NA Rattus norvegicus 81 Ppp1r1b ENSRNOG00000028404 ENSRNOT00000037752 1 1 1 94 10 86306288 86310334 CATCACTGAAAGCTGTGCA 59 86310392 86310410 TAACTCGTCCTCTTCCTCC 58 NA Rattus norvegicus 81 Antxr1 ENSRNOG00000008678 ENSRNOT00000011675 1 1 1 80 4 119081548 119081567 AGCAAGTGTCATCATTGCTC 59 119078909 119081506 GATCTGTTAGCCTCCCTCTC 59 NA Rattus norvegicus 81 Rd3 ENSRNOG00000050766 ENSRNOT00000075086 3 1 1 107 13 110745861 110747524 CATCCTCAGGTTCCGACAG 60 110747594 110747613 TCCTGCTTCATCTTCTCCAG 59 NA Rattus norvegicus 81 Morn1 ENSRNOG00000014642 ENSRNOT00000019930 1 1 1 80 5 172494740 172494758 CAGGATGGACAGGTGTACC 60 172494797 172495519 GTCACCATTCTTAAAGACCATCTG 60 NA Rattus norvegicus 81 Capn6 ENSRNOG00000004882 ENSRNOT00000006638 3 1 1 80 X 115054849 115055443 CTGCTCCATTGAGTCTCCC 60 115054787 115054809 ATGGTGTAGGTATAACCCTTCAG 60 NA Rattus norvegicus 81 Rhbdl3 ENSRNOG00000005515 ENSRNOT00000007312 3 1 1 91 10 67711863 67711881 CCACCTAGCCAACATTGTC 59 67723733 67729123 CCATACTCATACAGATCAAGGC 59 NA Rattus norvegicus 81 AABR07024972.1 ENSRNOG00000049177 ENSRNOT00000075287 3 1 1 80 16 23318663 23318682 CTTCAGATACTGCCCAATCG 59 23318724 23318974 AGGCAGAAATCCTTGAGAGG 60 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000085703,ENSRNOT00000091963 1 2 2 91 10 47801214 47810275 TTCATTTGGTACCAAGCCAG 59 47801142 47801160 AAGGGTCTGAGTTCTTGGG 59 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000085703,ENSRNOT00000091963 2 2 2 92 10 47801214 47810276 CTTCATTTGGTACCAAGCCAG 60 47801142 47801160 AAGGGTCTGAGTTCTTGGG 59 NA Rattus norvegicus 81 Olr1457 ENSRNOG00000050914 ENSRNOT00000042919 2 1 1 60 10 44749738 44749757 TTCTACTTGCTCCTCTCACC 59 44749697 44749715 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 3 2 2 80 1 36300782 36300800 AGCGGCAGCTTTATATGGT 60 36300269 36300744 CAGTGTTAATGACCTTCATCTTCTC 60 NA Rattus norvegicus 81 Rnf43 ENSRNOG00000007606 ENSRNOT00000010296 1 1 1 83 10 74959524 75013549 GAAGCTAATGCAGTCCCAC 59 75013596 75013614 TTGACGATGCTGATGAAGC 59 NA Rattus norvegicus 81 Ppp1r3d ENSRNOG00000053869 ENSRNOT00000090468 1 1 1 62 3 173953053 173953071 GATTTGTGCTGCAGTAGCC 60 173953009 173953027 CTGGAAGTCAGGAACCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dars ENSRNOG00000003743 ENSRNOT00000005127 1 1 1 80 13 45076756 45077837 CCAAGAAATCCTAAGCAGTCC 59 45076696 45076717 ATGTATTCTTTGTGCTCCAGAC 59 NA Rattus norvegicus 81 Dars ENSRNOG00000003743 ENSRNOT00000005127 2 1 1 80 13 45076755 45077836 CAAGAAATCCTAAGCAGTCCA 58 45076695 45076715 CATGTATTCTTTGTGCTCCAG 57 NA Rattus norvegicus 81 Olr421 ENSRNOG00000032321 ENSRNOT00000051973 3 1 1 60 3 21027545 21027565 ACCCTTTAAGATACTCTGCCA 59 21027505 21027528 GAGGTCAATGTTATTCTCAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk2ap1 ENSRNOG00000001070 ENSRNOT00000001419 1 1 1 88 12 37672703 37672721 CTACTAGCATGGCGACCTC 60 37672773 37674162 ATTTCCAGTTCCCTGGGTG 60 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062,ENSRNOT00000090832 3 2 5 85 9 81675650 81675668 AGTTCCTACAGCGAATGGG 60 81675830 81675849 CAGATCAGCTACAGGGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000081073 3 1 5 61 9 81672868 81672888 ATTACTCAGATCAGCAAGGAG 57 81672911 81674230 GACTTCTGGTCACCTTTGC 59 NA DesignRelaxed Rattus norvegicus 81 Olr705 ENSRNOG00000034169 ENSRNOT00000042658 1 1 1 60 3 78428938 78428959 TTCACCTTTCTCTTAGTCTCCT 58 78428899 78428919 CCTGACTGTGGGTCTTAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubqln4 ENSRNOG00000019933 ENSRNOT00000026994 3 1 1 80 2 187917997 187918460 TGCATCAATTCTTTCTGGCT 58 187918502 187918521 TGTAGCTCCATAAAGTTGGC 58 NA Rattus norvegicus 81 Lasp1 ENSRNOG00000004132 ENSRNOT00000005522 1 1 1 90 10 85744809 85752115 TGGATAAGTTCTGGCATAAAGC 59 85752166 85752184 GGCTTCTTCTCGTAACCCT 59 NA Rattus norvegicus 81 Edar ENSRNOG00000028598 ENSRNOT00000030348 1 1 1 80 20 28181512 28184848 TGGTGTTGTTGAAGGTCTC 58 28181450 28181470 TAGGTAGAACTGAGCATTCTG 57 NA Rattus norvegicus 81 Card14 ENSRNOG00000047367 ENSRNOT00000070842 2 1 1 80 10 108448066 108448567 CAGAAGCAGTACTGGGAGG 60 108448606 108448629 CTCTTTGTATAGTTCACAGTCCAC 59 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231,ENSRNOT00000077701 3 2 2 81 19 55937704 55937723 TTCCTAGAGCTGTATCGGGT 60 55937761 55938375 GGTTAAGATTATTCTTCACGACCTC 60 NA Rattus norvegicus 81 Efcab11 ENSRNOG00000053317 ENSRNOT00000082444 2 1 1 80 6 123894010 123894028 CTGTTTGGGTACAAACCCT 58 123865749 123889162 AAGTGATACACCAGAAGTGTC 58 NA Rattus norvegicus 81 Tmco5b ENSRNOG00000000009 ENSRNOT00000000010 1 1 1 80 3 104750039 104750708 GGATGATGAGGATGAGATTACAG 58 104750748 104750766 TCAAGGTCAGAGTTCAGGT 58 NA Rattus norvegicus 81 Pate4 ENSRNOG00000039447 ENSRNOT00000060454 1 1 1 81 8 36815788 36816131 AATCTATCACGGACAACGG 57 36815725 36815743 GTCTCCATTGTAATGCGGT 58 NA Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 3 2 2 80 19 37583534 37583557 GAGTTATGTAGAAGTCTTGGACAG 59 37583594 37583718 TTCTGTACCAGTAACACCTCC 59 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 2 2 2 80 20 12335484 12335557 GACGGCTTGAGGTACTACC 60 12335422 12335440 CACAGAATCCTCCAAGGGA 59 NA Rattus norvegicus 81 Pebp4 ENSRNOG00000026247 ENSRNOT00000039454 3 1 1 82 15 51727302 51729675 GGCAATATAATAACAGACTACCAGC 60 51729712 51729733 TGAAGGTAGACAAAGAACTGGT 59 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 3 2 2 89 11 70539759 70540971 GTCTTCATCCATACAGGCGA 60 70539689 70539707 CTTCTCGTGTCTCTGGAGC 60 NA Rattus norvegicus 81 Prss38 ENSRNOG00000022548 ENSRNOT00000050370 1 1 1 80 10 45725381 45726059 TTTGCCAGGGAGAAGAGAC 59 45725319 45725337 CTGGGTATGTTTGTTGGCC 59 NA Rattus norvegicus 81 Armc3 ENSRNOG00000016716 ENSRNOT00000075188 2 1 1 80 17 85939195 85942478 AGACCAAGGAACTGAACGA 59 85942520 85942540 ACACCATTGTGTCCATATCCT 59 NA Rattus norvegicus 81 Serpina10 ENSRNOG00000050761 ENSRNOT00000073709 3 1 1 80 6 127503983 127505316 CTTGTTCAAAGGCAAGTGG 57 127503921 127503939 GCCTTGTATTTGTCCAGGT 58 NA Rattus norvegicus 81 Ndufv3-ps1 ENSRNOG00000027593 ENSRNOT00000030926 3 1 1 60 13 51297380 51297398 AGCATCATGAGTACAACGC 58 51297338 51297357 CTGAACTTGGAGAGGTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910540 ENSRNOG00000001387 ENSRNOT00000001871 3 1 1 140 12 21983922 21985024 TCGTCACGGGTAACTATGTC 59 21985127 21985145 GGCGGAACATTCTCTTCAG 59 NA Rattus norvegicus 81 Pdf ENSRNOG00000022303 ENSRNOT00000036634 3 1 1 83 19 39245361 39246017 CAGATCTCAGGACTGGACC 59 39245296 39245316 CATCTCATGCTGGATGATTCG 59 NA Rattus norvegicus 81 Rora ENSRNOG00000027145 ENSRNOT00000013142 1 1 1 80 8 75589374 75589392 ATAGGACCAGCAGAAACCG 60 75589435 75591836 ACTTGACAGCATCTCGAGAC 60 NA Rattus norvegicus 81 Col27a1 ENSRNOG00000007657 ENSRNOT00000010333 2 1 1 80 5 79165943 79167440 GGCGGATGGTATCTACTGG 59 79167483 79167502 CCATGTGTAAAGTTGCAGGA 59 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 3 1 1 106 4 100481918 100481936 TGCTTACCACAACAAACGA 58 100479046 100480798 GCTTTAGGTTCAAACGTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Rhbdl1 ENSRNOG00000019921 ENSRNOT00000026971 2 1 1 80 10 15203077 15203095 GGTACTTCTACAGGCACCG 60 15202940 15203034 ACAGGAACACGATGATCTGG 60 NA Rattus norvegicus 81 Efcab6 ENSRNOG00000011094 ENSRNOT00000015447 3 1 1 80 7 124834375 124836272 TTAATTATCAGTCCGACGCC 58 124834314 124834332 TAACTTCACAACCACGCAG 58 NA Rattus norvegicus 81 Mir291a ENSRNOG00000051974 ENSRNOT00000083441 3 1 1 60 1 64538466 64538486 GGTGTAGTAGCCATCAAAGTG 59 64538426 64538445 AGTGGAAGCACTTTCTAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000004373,ENSRNOT00000087404 3 2 2 80 10 107471166 107471184 GTTCAGGAGGAACAACAGG 58 107471228 107473871 TGTTTCTTCAGGCCTTGTC 58 NA Rattus norvegicus 81 Spata16 ENSRNOG00000024521 ENSRNOT00000035263 1 1 1 80 2 112572092 112572111 GTGAGACACATGGAGATGGT 60 112572151 112594101 GAAATTCCCATTTAGTTGCGTG 59 NA Rattus norvegicus 81 Igbp1b ENSRNOG00000008125 ENSRNOT00000010707 3 1 1 60 4 172710524 172710542 TCTGACGGTGAATGACTGG 59 172710565 172710584 CCGAACAGAAGATGAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp846 ENSRNOG00000020356 ENSRNOT00000068461 1 1 1 80 8 21612040 21612059 GATCAAGCTCACAGAGACCT 59 21612102 21614408 GATGACCTCACATCCTGCT 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458,ENSRNOT00000084860 3 2 2 80 2 244280915 244280933 CAAAGAGGATGACCTTGCT 57 244280344 244280872 TTCTGCATGGATTCATCTCC 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962,ENSRNOT00000070848,ENSRNOT00000067689,ENSRNOT00000073853,ENSRNOT00000060253,ENSRNOT00000060250 1 6 10 81 15 32855315 32855333 AATCCTCCTGCTGAAAGTG 57 32855377 32855973 AGTCACGCTCTTTCAATCTC 58 NA InUTR Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019,ENSRNOT00000060254 1 2 10 80 15 32244452 32425238 TTTCTCATGAGAGGAAACAGTG 58 32425278 32425297 CTCTAGTGAGGCTCCTTCAG 59 NA Rattus norvegicus 81 Morn4 ENSRNOG00000027156 ENSRNOT00000037490 1 1 1 83 1 261324586 261325174 ATGGGTCAAGGTATGAGGG 59 261324521 261324542 CAAAGGTCATGTTGTCATATCG 58 NA Rattus norvegicus 81 Armc12 ENSRNOG00000000508 ENSRNOT00000000609 1 1 1 80 20 8119227 8119668 CATTCTCAACTGTCAGGTGC 59 8119711 8119729 AGCACCTCGAATAGCAGAC 60 NA Rattus norvegicus 81 LOC100362356 ENSRNOG00000030188 ENSRNOT00000040783 1 1 1 80 8 37126636 37126768 CATGGACATAGGAGAAAGAGTG 58 37126278 37126296 CATTCGAACCCATCATGGT 58 NA Rattus norvegicus 81 Pcolce ENSRNOG00000025001 ENSRNOT00000080775,ENSRNOT00000001894 1 2 2 80 12 22157214 22157864 TCAAACCAGGTGATCATGC 58 22157906 22157926 CACACTGACAGAGTCATATCG 58 NA Rattus norvegicus 81 Dnase1 ENSRNOG00000006873 ENSRNOT00000009283 2 1 1 80 10 11758725 11758743 CTGTGAGTGAGATCGATGC 58 11758589 11758682 CCATGAACATGATGTCCTCC 59 NA Rattus norvegicus 81 Olr1507 ENSRNOG00000019898 ENSRNOT00000026924 1 1 1 60 10 60865136 60865155 TGTAGCTCTGGGCATTACTG 60 60865095 60865113 CACCACACGATCATAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912642 ENSRNOG00000030466 ENSRNOT00000089521 3 1 1 80 5 119495014 119505192 GAGGATCCAGCAGTTTGTG 59 119494952 119494972 CCAGTTATGACCACTACTGAG 58 NA Rattus norvegicus 81 Ankrd26 ENSRNOG00000006717 ENSRNOT00000073562 2 1 1 80 4 150560622 150562615 ATGGGAATTTGTCTGAAGAGG 58 150560562 150560584 GATCCAAAGTATATTCCAGGGAC 59 NA Rattus norvegicus 81 Clybl ENSRNOG00000014075 ENSRNOT00000018918 3 1 1 81 15 108813381 108813399 AGATTGGACCTCAAGTGGG 59 108813444 108814754 CTTGTTGCACCTATGCTGG 59 NA Rattus norvegicus 81 Psap ENSRNOG00000000571 ENSRNOT00000000696 2 1 1 80 20 29849663 29849683 TGCAAGAACTATGTTGACCAG 59 29849724 29852585 GATTTCCTTGGGTTGCTCAC 60 NA Rattus norvegicus 81 Paics ENSRNOG00000002101 ENSRNOT00000063942 1 1 1 80 14 33569325 33569344 AAGTAACTCCGGAAGGACTC 59 33567500 33569283 TTGACTTGAGAAGCAACTCC 58 NA Rattus norvegicus 81 Lrch1 ENSRNOG00000009412 ENSRNOT00000047192 1 1 1 80 15 56808126 56817532 TCGTTCAGTGTTTCTAAGACC 58 56808066 56808084 ATCTGCTCCATCTTCCTCC 59 NA Rattus norvegicus 81 Ttc30a1 ENSRNOG00000052519 ENSRNOT00000013565 1 1 1 60 3 62802493 62802511 AGCAGAGGAAGAGTTGGAC 59 62802451 62802470 GGCATCCATGTTCATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259,ENSRNOT00000086539 3 2 2 80 5 120430765 120430784 AGTCATCCAGTCTGTTAGCA 59 120431953 120432067 AAGGACATCACGATAATCCTG 58 NA Rattus norvegicus 81 Sstr3 ENSRNOG00000007332 ENSRNOT00000009612 1 1 1 111 7 119767364 119767382 AGATGCAAGCTACCCATGG 60 119764138 119767289 ACTAGCCCAAACCTTACGG 59 NA InUTR Rattus norvegicus 81 Kctd5 ENSRNOG00000057186 ENSRNOT00000084991 3 1 1 81 10 13432867 13445878 ATTCGGACAAGGATGAAACG 59 13432805 13432823 TGTCTCAGGTAGTTCAGCA 58 NA Rattus norvegicus 81 Bfsp2 ENSRNOG00000010899 ENSRNOT00000032376 1 1 1 80 8 111937035 111937054 TGGAGCATCAAATCGAAAGC 59 111935840 111936995 TGTACAGAACCTTCACATCCTC 60 NA Rattus norvegicus 81 Hoxd8 ENSRNOG00000042480 ENSRNOT00000067861 1 1 1 80 3 61627850 61627873 TTCGTCCAGAATATTGGCG 58 61627917 61627935 TCTCATCTCAGGGAAACGA 58 NA Rattus norvegicus 81 Otop2 ENSRNOG00000028121 ENSRNOT00000038935 2 1 1 84 10 103876016 103876036 CAGTTTCTTTGAGTGCCAGTC 60 103876077 103877618 GAGAAAGTAAGTCTGGACAATGAC 60 NA Rattus norvegicus 81 Ap1s3 ENSRNOG00000049873 ENSRNOT00000072160 2 1 1 81 9 85404468 85404487 AGACAATGAGCTCTTGACAC 58 85393968 85404424 CAGCTCACAGACATTTCCA 58 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 3 2 2 80 10 34953440 34953459 GGTGTGGATCTGATCAAGGA 59 34953502 34954388 TTCCTTTAGCCTGGAGACC 59 NA Rattus norvegicus 81 Rn60_13_0898.1 ENSRNOG00000051247 ENSRNOT00000076275 1 1 1 60 13 84915468 84915486 GATGAAGGAAATCGTGGGT 58 84915426 84915445 CATTGTTGATGCCATGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam58b ENSRNOG00000022582 ENSRNOT00000011019 1 1 1 60 10 66020474 66020493 TCTTCTGCGAGATTAACCTG 58 66020433 66020451 TAAAGGGAAGACATGGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasip1 ENSRNOG00000021004 ENSRNOT00000032535 2 1 1 86 1 101612005 101612023 GACTCAGTGCCTCATTCAG 58 101612073 101614520 TACACCACGAAGTCCTGAG 59 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562,ENSRNOT00000078675 3 2 2 80 10 51707136 51710193 ACACAATCCAGGATCTCACTC 60 51707076 51707094 CAGAGTCTGACTGGTTGCT 59 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000073534,ENSRNOT00000072803 3 2 2 80 17 90205076 90205094 GAGGTACCAGCAGAAAGTG 58 90203905 90205035 ATACTTTCGAAGATCCTCTGTG 58 NA Rattus norvegicus 81 Ndufa9 ENSRNOG00000061684 ENSRNOT00000089193 3 1 1 80 4 159374247 159374265 TGGATTGGCAGACTCTTCG 60 159371506 159374206 ATCTGAGATATGTATCCGCTCC 59 NA Rattus norvegicus 81 Gpr18 ENSRNOG00000012628 ENSRNOT00000016848 1 1 1 82 15 108324290 108326728 GACAGGAGTTTCTACGTACCA 59 108324228 108324246 TTGGAAAGAGCAAGCTGGT 60 NA InUTR Rattus norvegicus 81 Gskip ENSRNOG00000042427 ENSRNOT00000006307 1 1 1 87 6 129519787 129532669 GCTCGCAGAATGGAAACAG 60 129532720 129532738 CTTCAAACCCGTTGAGCTC 59 NA Rattus norvegicus 81 Hist1h2bd ENSRNOG00000060769 ENSRNOT00000084303 1 1 1 60 17 44834089 44834107 GTGAACGACATCTTCGAGC 59 44834047 44834066 GCTTGTTGTAATGAGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acbd7 ENSRNOG00000016480 ENSRNOT00000064609 2 1 1 108 17 78905878 78906002 TCAACATTGCATGTCCAGC 59 78905596 78905614 GAAATGTAGGCACCCATGG 59 NA Rattus norvegicus 81 LOC100359930 ENSRNOG00000028852 ENSRNOT00000049588 3 1 1 85 1 82653588 82653606 CAGCTAGGCTTCAAACCAC 59 82653433 82653540 AAGATGGCTACCAAGTCCTC 59 NA Rattus norvegicus 81 4933416C03Rik ENSRNOG00000022632 ENSRNOT00000032374 2 1 1 60 7 59139414 59139433 AACGGAGAAAGCTCTAGTGG 60 59139373 59139391 GCCTCTTCACTTCCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l2 ENSRNOG00000033929 ENSRNOT00000045639 1 1 1 84 11 67396004 67398083 ACTTCATTAAGATGGATGTGGG 58 67395941 67395962 AGTTCCAAATCATCCTTTCCAG 59 NA Rattus norvegicus 81 Cebpe ENSRNOG00000014282 ENSRNOT00000019155 2 1 1 248 15 33357142 33357160 GTGAAAGAGGAGCCTCGAG 60 33356359 33356378 TTTGTTCACTGCCTTCTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Izumo4 ENSRNOG00000031950 ENSRNOT00000049766 2 1 1 80 7 11876291 11876565 CAGGATGTAAAGATGAGAACCA 58 11875885 11875904 CAGGTTAACCAGATGCTGAG 58 NA Rattus norvegicus 81 Agtr1b ENSRNOG00000010640 ENSRNOT00000014178 2 1 1 104 2 105224194 105224212 CTTGAAAGAAGCCCAGAGC 59 105151013 105151033 TCAGTAGAGGAGTTAAGGGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Trpv2 ENSRNOG00000003104 ENSRNOT00000004248 1 1 1 80 10 48918124 48918144 GCTGAACCTGCTTTACTACAC 59 48918185 48919611 TCTCGAAGGATGACCTTCTG 59 NA Rattus norvegicus 81 Ribc2 ENSRNOG00000033502 ENSRNOT00000042412 3 1 1 80 7 126035020 126038773 AACAAGAAACAGGTTGTGGA 58 126038814 126038834 GATCTCGCTCATGTTATCCTC 58 NA Rattus norvegicus 81 Brat1 ENSRNOG00000001236 ENSRNOT00000064726 3 1 1 86 12 16021072 16022225 TGAAACTTCAGCATTGTCCC 59 16021005 16021023 TGGTAGCTTTCAGGATGCA 59 NA Rattus norvegicus 81 Mir708 ENSRNOG00000040447 ENSRNOT00000062200 1 1 1 60 1 161221253 161221274 CTCAAGGAGCTTACAATCTAGC 59 161221292 161221313 ACAGTCTAGTTGTGTTCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp1a ENSRNOG00000016001 ENSRNOT00000021483 2 1 1 81 19 56004745 56004763 CCTTCAGAAGGTGTCTGCA 60 56004070 56004700 ATCCTCCATCACCGATGTG 59 NA Rattus norvegicus 81 Olr461 ENSRNOG00000051828 ENSRNOT00000079401 1 1 1 60 3 73204715 73204733 GAAGACCATCCCATTTGCC 59 73204757 73204775 CATTCCGAAGGAGAGTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 3 2 2 80 4 22536909 22536927 GAGAAGGATTGGATGGCAC 58 22536970 22553083 TGATGCTGTCAGAACTTTGC 59 NA Rattus norvegicus 81 AABR07003244.1 ENSRNOG00000050893 ENSRNOT00000072944 1 1 1 81 1 99941213 99941232 ACCTATTCACAGAGGGTGAC 59 99940902 99941169 CCATGGAGATCATGCAGGT 60 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019876 2 1 4 86 7 117721922 117721940 AGGAATGAATGGAGCACTG 58 117721679 117721872 TCGACTGGACTGTACAGAG 58 NA Rattus norvegicus 81 Gabrb2 ENSRNOG00000003680 ENSRNOT00000004970 1 1 1 80 10 28153062 28153080 GAGCTTCCTCAGTTCTCCA 59 28153121 28154925 CAATCTGGGATAAGAACCTGTG 59 NA Rattus norvegicus 81 Aqp9 ENSRNOG00000061883 ENSRNOT00000087980 1 1 1 80 8 77560156 77563046 TTGAGGTCTTCACAGTTGGA 59 77560095 77560113 TAAGACCTCCCAGGAAAGC 59 NA Rattus norvegicus 81 Ppp1r16a ENSRNOG00000015450 ENSRNOT00000020768 3 1 1 81 7 117755178 117755196 GGAATATGCCCTACGACCT 59 117755241 117755332 TGGGTGATACCACGATTGG 60 NA Rattus norvegicus 81 Hist1h2bl ENSRNOG00000059382 ENSRNOT00000072195 3 1 1 61 17 44738180 44738198 GTGCTGAAGCAAGTACACC 59 44738137 44738155 GAGTTCATGATGCCCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar3 ENSRNOG00000025982 ENSRNOT00000035539 2 1 1 60 1 22570087 22570106 CAACTTCCTGATCCTCTCCA 59 22570046 22570064 AGGCATGATGACAAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahsp ENSRNOG00000020165 ENSRNOT00000027297 3 1 1 80 1 199720422 199720669 ATCAGCAGGTCTTTGATGAC 58 199720711 199720730 TGATGTACAAGTTCACCCAG 58 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000058437 ENSRNOT00000089436 2 1 1 155 17 44758671 44758689 CGAGGGACAACAAGAAGAC 58 44758808 44758826 TCTCTGTCTTCTTGGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd1 ENSRNOG00000025689 ENSRNOT00000010403 2 1 1 80 6 26788981 26789001 TTGTGAAGCACATAAAGCACC 60 26788803 26788941 TAAGTACCAGTATCCCTCCGA 59 NA Rattus norvegicus 81 Pabpc6 ENSRNOG00000017367 ENSRNOT00000023319 1 1 1 60 1 51620866 51620886 CGATGATGGTATTGATGACGA 58 51620907 51620926 AGTGATAGTCCCAAACGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr1d ENSRNOG00000012038 ENSRNOT00000016046 1 1 1 60 5 154801120 154801138 ACATTGGGCATCATTCTGG 58 154801160 154801180 AGGATACCACAAAGAAAGGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000084293 2 1 2 113 5 107825387 107825406 GTCCAAAGTTGCAGCTCTC 59 107825291 107825309 AGAGTGTCTAGGAAGCCCT 59 NA Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000079251 1 1 2 182 5 107841118 107841136 TGGTCACTGTGAGGATTCG 59 107825415 107840972 CATCATCACCTGGTCCAGG 60 NA Rattus norvegicus 81 Olr1285 ENSRNOG00000052267 ENSRNOT00000080457 3 1 1 60 15 35789695 35789715 ACAGAGAAGAACATCATCTCC 57 35789734 35789755 ATATGATGGCAAAGTAGAGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emc4 ENSRNOG00000005719 ENSRNOT00000007612 1 1 1 80 3 103853721 103853739 TCCCTACCATGATGGTGTG 59 103853471 103853677 CCAGCATCTTGAAAGTGGC 60 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 3 2 2 80 15 4005268 4005287 GCCTCAATGGAGATCATCCA 60 4005330 4005513 ATCTGCATCGAACCTGAGG 60 NA Rattus norvegicus 81 Mrgprd ENSRNOG00000013448 ENSRNOT00000017958 1 1 1 60 1 218488517 218488536 TTCCTTACCTGTTCTCTGCC 60 218488559 218488577 GCAGTTCCACCCAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9b2 ENSRNOG00000023404 ENSRNOT00000031425 2 1 1 81 2 240515993 240516013 CCAGGGTACTTCAGAAATCTG 58 240516056 240518843 CCAGACTTCCTCTGAACGT 59 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 2 2 2 100 7 121151327 121151345 GTGAAGTGGAAAGGATGGC 59 121141742 121144278 TTCTCCTCCTTCTCCTCGT 59 NA Rattus norvegicus 81 Med7 ENSRNOG00000007053 ENSRNOT00000009238 2 1 1 80 10 31535053 31535461 CTGGTCTTAGGTTCTTGATTGTC 59 31535500 31535519 GATGTACTGCATTGGAGGTG 59 NA InUTR Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 2 1 1 73 6 126623039 126623058 GAACTGAGTGACTCTTGCAC 59 126623094 126623501 ATTCTCCATGCTCTGTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r78 ENSRNOG00000057171 ENSRNOT00000080536 3 1 1 60 4 87943643 87943661 AATCTTCCGCATGAACTCC 58 87943684 87943703 ATCTCTTGAGGTTGTCACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgip1 ENSRNOG00000006357 ENSRNOT00000064567 1 1 1 80 5 122390582 122398330 GACACTGATTCTACAGGCTC 58 122401183 122401202 CTCTGCTTTGCTATGGTAGG 58 NA Rattus norvegicus 81 AABR07001923.1 ENSRNOG00000047884 ENSRNOT00000072607 3 1 1 60 1 62114320 62114338 ACCAAGCTAACTTCAGGGA 58 62114278 62114298 CCAGTTTCATGTTTGTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 3 2 2 80 10 109107492 109122261 AATGTCTACAAGACCATCATGG 58 109122300 109122320 TGCTTTCTCATAGTTCTTCCC 58 NA Rattus norvegicus 81 AABR07017825.1 ENSRNOG00000045549 ENSRNOT00000075092 2 1 1 92 15 31456306 31456472 CCTAATGCTCAGGAGGAGC 60 31456528 31456546 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Tet2 ENSRNOG00000023579 ENSRNOT00000046775 1 1 1 80 2 238736437 238737587 ATCATGGAAGAAAGGTTTGGAG 59 238736378 238736397 GCTCTTGCCTTCTTTACCAG 59 NA Rattus norvegicus 81 Olr1297 ENSRNOG00000046553 ENSRNOT00000075687 2 1 1 60 15 35505243 35505264 TGTATCCATGTCCTTTCAAGTC 58 35505284 35505303 TAAGCCAACACCATACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763 3 1 2 80 13 82602429 82602450 CTCAAGAATTCTGAAAGGAGGC 59 82600396 82602392 ACGATTTACCTCTGTCTGTACTC 60 NA Rattus norvegicus 81 Zdhhc8 ENSRNOG00000021891 ENSRNOT00000048063 1 1 1 80 11 86903341 86909343 TTCTTCGTATTCACGTGCC 58 86909387 86909405 AAAGAGGAAGAGGATGCCA 58 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604,ENSRNOT00000083665 3 2 2 81 6 123404413 123404434 TCAGTGAGACATAATTTGTCCC 58 123356247 123404374 ATGATCCTTTCCCAATACTCTG 58 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 2 1 1 67 8 37704182 37704201 TGCAATATGGTACATCGCTG 59 37702374 37704155 GTCAAGACTCAATAAAGAGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814,ENSRNOT00000082412 2 2 2 80 1 264692421 264692439 ACACAAGGCTTCCTTACCA 59 264692483 264702489 CGACATCATCCGAAACAGC 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 3 2 2 86 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723681 94723701 CTTGTCATACAAGGGACATGG 59 NA Rattus norvegicus 81 LOC684539 ENSRNOG00000049125 ENSRNOT00000072178 2 1 1 60 3 73064797 73064817 AGAGCTTTCTCTACATGTGGG 60 73064836 73064857 GTAAAGCACCATAGAACACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl23 ENSRNOG00000004107 ENSRNOT00000005471 3 1 1 81 10 85721519 85721626 GGCGAGATGAAAGGTTCTG 59 85721456 85721474 CTGCATTGGATGCAATCCT 59 NA Rattus norvegicus 81 Pcdhga1 ENSRNOG00000039463 ENSRNOT00000060475 3 1 1 60 18 30810173 30810194 GGTAGTAGCAGTAGACAAAGAC 58 30810215 30810233 TTTGAGCAGACGGTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a17 ENSRNOG00000016414 ENSRNOT00000021851 2 1 1 80 15 33570706 33571096 CTGTGGGATTATCTGAACGA 57 33570645 33570663 GAGGATAGCAGAAGCTTGG 58 NA Rattus norvegicus 81 Spaca4 ENSRNOG00000021037 ENSRNOT00000028558 3 1 1 60 1 101708040 101708059 TTCTGGTGTTGGTTCTTTGC 59 101707999 101708018 AGCTCACAGAAGACACAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.2 ENSRNOG00000059982 ENSRNOT00000085376 1 1 1 60 15 35571188 35571208 CCCTCTTCTTCCTCTTCACAG 60 35571230 35571248 ATTATGCCCAGGTTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042633.1 ENSRNOG00000049312 ENSRNOT00000046676 2 1 1 80 19 459018 459036 GACGAACAGGAGAAGACCA 59 458276 458414 CTCTGAGACTGAAATCATTGCT 59 NA Rattus norvegicus 81 AABR07042633.1 ENSRNOG00000049312 ENSRNOT00000046676 3 1 1 80 19 459146 459823 TAACTTCTATCGCAACCTGCA 60 459086 459104 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000081015,ENSRNOT00000084918 1 2 3 80 20 3736929 3736947 GAACAAGTCCCTCCTGAGG 59 3736724 3736887 CTTCAAGTGCTTCAAGGTGTC 60 NA Rattus norvegicus 81 Olr505 ENSRNOG00000053395 ENSRNOT00000079710 1 1 1 60 3 73779303 73779325 CTCATTCTCAGAGCTATTCTCAG 58 73779265 73779283 TGGAGAAAGCCTTCTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr505 ENSRNOG00000053395 ENSRNOT00000079710 3 1 1 60 3 73779809 73779827 ATCAAGGCTACAAACACCC 58 73779767 73779785 ACCAAGGTCAGTAGTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 2 2 3 80 X 72513542 72514992 CCTGTGCCATCAGAATCCA 60 72513480 72513500 TACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 AABR07002938.1 ENSRNOG00000037415 ENSRNOT00000056615 3 1 1 93 1 89871258 89871276 CAAAGGCCTTGACTTGGAG 59 89871180 89871205 CCTTCTCTTGAGATGTTCATCTC 59 NA Rattus norvegicus 81 Nyx ENSRNOG00000009646 ENSRNOT00000013382 3 1 1 96 X 10199287 10218067 GCTTCTTTATGCGGTGGTC 59 10199209 10199227 CTCCACGTTACTGCAAGTG 59 NA Rattus norvegicus 81 Pih1d1 ENSRNOG00000020634 ENSRNOT00000028022 2 1 1 80 1 101155227 101155334 TACCTGAGGATGCAGAACAG 59 101155376 101155395 GCCATACTTGTCTTCAAGGC 59 NA Rattus norvegicus 81 Gbp1 ENSRNOG00000023943 ENSRNOT00000045855 3 1 1 80 2 248403782 248404362 TCAAATGAAATTAGGGTCTCGG 59 248404401 248404421 CAACGGTTAGATGACACTTCC 59 NA Rattus norvegicus 81 Qpctl ENSRNOG00000015413 ENSRNOT00000021200 3 1 1 92 1 80052209 80052227 GACTCCCTCTATGGTTCCC 59 80052023 80052154 AAAGAGCTCAATAGCCTGGA 59 NA Rattus norvegicus 81 Prdm11 ENSRNOG00000008674 ENSRNOT00000066526 3 1 1 81 3 81909474 81909926 ACTTCTGGTTCTGCGAGTC 60 81909411 81909429 GTGTCAGACACAAACACGG 59 NA Rattus norvegicus 81 AABR07002774.2 ENSRNOG00000048765 ENSRNOT00000025581 1 1 1 80 1 84680647 84680665 CTGGATGCTACTCAGAAGG 57 84680707 84685100 AAGTTCTACATCCACTGTGAC 58 NA Rattus norvegicus 81 Gprin3 ENSRNOG00000023657 ENSRNOT00000039316 2 1 1 60 4 89695333 89695351 CCCACCAAATACTAGCACC 58 89695291 89695310 GTTTGCCTCTGATTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 3 2 2 172 1 147764530 147808268 CCTAATTAAGTGGAAGCAGGA 58 147808402 147884083 CCTGGACTTTAGCTGTGAC 58 NA Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913,ENSRNOT00000055077 3 2 2 83 X 2089987 2104900 ACTAATTGATGAGATGGTTGGC 59 2089925 2089943 ACCCTCTGAGCATCTTCAG 59 NA Rattus norvegicus 81 AABR07051400.1 ENSRNOG00000047244 ENSRNOT00000072628 2 1 1 80 3 9228080 9228100 ACATACGTCTTCACGATAGTC 58 9227829 9228040 TAAGGAAAGGAACATCACCAC 58 NA Rattus norvegicus 81 Zcchc17 ENSRNOG00000012266 ENSRNOT00000017156 2 1 1 84 5 148566566 148571324 AAGGAGAGGTTGCTATGGTG 60 148556009 148556027 TGAGTTCGATGGACCAGAC 59 NA Rattus norvegicus 81 Olr436 ENSRNOG00000032273 ENSRNOT00000040012 1 1 1 60 3 72739984 72740005 ATGCCATCAATCACTTCTTCTG 59 72739945 72739963 ATACTGGAGCACGATAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028049.1 ENSRNOG00000048452 ENSRNOT00000075683 1 1 1 60 17 54808419 54808437 GAGAGTCAGCTTCCATCAC 58 54808377 54808397 GTCTTGCCGTCTTTGTATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raver2 ENSRNOG00000023812 ENSRNOT00000033933 3 1 1 81 5 119962621 119964811 GTAAAGCACAGCAGAGCTC 59 119964854 119964874 TGCTGTATCAAAGGTAAGGGA 59 NA Rattus norvegicus 81 LOC103691445 ENSRNOG00000050842 ENSRNOT00000071711 3 1 1 60 15 35910043 35910063 AGCATTCATGTATCTACAGCC 58 35910083 35910103 TGATGATACTTTCCCTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 2 3 3 80 18 72595266 72597870 TACATCCCAGAAACACCAC 57 72597912 72597932 GTCCATACTTTGGTTCAACTG 57 NA Rattus norvegicus 81 Olr867 ENSRNOG00000057338 ENSRNOT00000089549 3 1 1 60 5 137873786 137873810 CTGAGAAACAAAGATATCAAGAGGG 60 137873750 137873768 AGTCCATCCTACCATGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a13 ENSRNOG00000012393 ENSRNOT00000016519 2 1 1 80 2 189907101 189912290 TTTGCTCAAGGATGTGGGT 60 189912333 189912352 TCATTGAACTTCAGCTCCGA 60 NA Rattus norvegicus 81 Olr868 ENSRNOG00000047897 ENSRNOT00000044946 2 1 1 60 5 137901081 137901102 TTTCTTCACCATGAGTCTACCC 60 137901042 137901062 TTCACAGAAGTAGTGGTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tldc2 ENSRNOG00000006395 ENSRNOT00000008386 1 1 1 80 3 153199479 153200019 CTCAGAGATTAAGCAGCTCAG 58 153200060 153200079 CTTGACGTGCAGAAGATCAG 59 NA Rattus norvegicus 81 AABR07004891.1 ENSRNOG00000033196 ENSRNOT00000025728 1 1 1 86 1 166187030 166189686 GTAAACAGGAGAAGGAGAAAGAG 59 166186966 166186984 CTTCCTCCTCTTCCTCCTC 58 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 1 2 2 80 13 103199627 103199645 CTTGTTGACCCTGTGTCTG 58 103199686 103199940 TCTTTCACTCTTCTTGTCACTC 58 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 3 2 2 82 10 49191269 49191289 TGACTACGATTCGGAAGATGG 60 49188371 49191225 TGGTTTCCACGTCTGAGTC 60 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000033994 ENSRNOT00000042537 3 1 1 60 3 73335646 73335667 GACCTTCTGTAAATCCAATGTC 57 73335687 73335706 CTTAATGAGTGGTGGGTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 1 2 2 80 2 196170166 196171201 CATGCAGCAAGGTTCTCAG 59 196171244 196171263 ATGCTCATGTGGAACCTCTC 60 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 2 2 2 80 2 196157732 196158563 ATTCCAAGGATAAGGCTCCC 59 196158605 196158624 GGGCAGGAACATTAGTTGTG 59 NA Rattus norvegicus 81 AABR07015015.2 ENSRNOG00000057505 ENSRNOT00000059247 2 1 1 60 14 45375968 45375986 AACAAGAAAGGCCTGACGA 60 45375926 45375944 CTGTTCGTTCACTCACTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912505 ENSRNOG00000052339 ENSRNOT00000084063 3 1 1 60 3 73676747 73676767 CTTGTTCTTGTGTCCTACCTG 59 73676707 73676725 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina4 ENSRNOG00000009788 ENSRNOT00000013045 2 1 1 80 6 127747184 127749483 CATCTTCTTCCAAGGTCTTTGG 59 127749518 127749542 GTGTTCTCATCTACATAGAAGTCAC 59 NA Rattus norvegicus 81 Olr847 ENSRNOG00000046095 ENSRNOT00000075727 3 1 1 60 5 69178714 69178732 TTGCTTCTTGGCATGATGG 59 69178672 69178691 AGTATCTCAGAGGGTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016863.2 ENSRNOG00000060401 ENSRNOT00000048713 2 1 1 123 15 2528905 2528923 TGTAATCTCCGTGAGCGAG 59 2529010 2531765 CTTGATGCTGTTTCTGGCT 59 NA InUTR Rattus norvegicus 81 Traf7 ENSRNOG00000003131 ENSRNOT00000004192 2 1 1 80 10 13878903 13879463 TTGAAGTCAGAGAAGTGTCCT 59 13878843 13878862 TCCAATCTGCTCAGCTACTG 60 NA Rattus norvegicus 81 Lrrn2 ENSRNOG00000009691 ENSRNOT00000012844 1 1 1 263 13 49660619 49660637 TACATATAGGACAGCGCCC 59 49727503 49727521 AAGATAGCAAGAGGGCAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC103693822 ENSRNOG00000059282 ENSRNOT00000080898 1 1 1 60 15 27590455 27590475 ATTCTGGTATCATCATGCTGG 58 27590415 27590433 TGGAGAAGACAGGGATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc12 ENSRNOG00000013162 ENSRNOT00000017567 2 1 1 149 X 122809549 122809982 CTAGCTGGTACCCTACTGAG 58 122810094 122810112 GTTACCCATGCGTGAAAGG 59 NA InUTR Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 2 1 3 80 14 34557024 34557975 AATAAGAAAGGTGTGGTCATCC 59 34556965 34556988 GTAGTTAGCAGAAGACACATACTC 59 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 3 2 2 80 13 53165338 53165357 CGGTTCCTGTCTTAAATGCT 58 53161492 53165296 GACGTGTATATCTGGAGGTG 57 NA Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000084722 1 1 3 252 3 147480811 147480830 AATAGTGACCAGAAAGGCTC 57 147477881 147477899 TAGCCTTATCAGCCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1291 ENSRNOG00000052671 ENSRNOT00000083163 1 1 1 60 15 35630064 35630082 TGTTGCCATCTGTAACCCA 59 35630103 35630124 AGAAGTGTAAATCTGAGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5dc2 ENSRNOG00000018358 ENSRNOT00000024840 1 1 1 80 16 7219868 7219888 TCAACACAGAACAGTACATGC 59 7219930 7220058 CCTGATAAGTCTGCATGCG 59 NA Rattus norvegicus 81 Nt5dc2 ENSRNOG00000018358 ENSRNOT00000024840 3 1 1 80 16 7219874 7219893 CAGAACAGTACATGCACTCG 59 7219935 7220064 CAGCATCCTGATAAGTCTGC 59 NA Rattus norvegicus 81 Pstpip2 ENSRNOG00000016987 ENSRNOT00000022833 1 1 1 80 18 74282482 74282655 GTAGAGGACTCAGACAAAGC 58 74282698 74282716 AATGTGTTCACTCTGCCAG 58 NA Rattus norvegicus 81 Sf3a2 ENSRNOG00000019349 ENSRNOT00000026202 3 1 1 80 7 11781133 11781260 CGACATCAATAAGGACCCG 58 11781071 11781091 TTGTTATGCAGAGTCAAGCAG 59 NA Rattus norvegicus 81 Nckap1 ENSRNOG00000007518 ENSRNOT00000064851 1 1 1 80 3 67773549 67773568 CTTGGTCAGATGATTGTGGA 58 67769437 67773506 TGAAAGAGACTTGCTGTGG 58 NA Rattus norvegicus 81 Maob ENSRNOG00000029778 ENSRNOT00000044009 1 1 1 80 X 6506793 6506811 GTGGTTCCTGTGGTATGTG 58 6506854 6508002 AATTTCCTCTCCTGTCCTCC 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000080462 3 1 3 81 5 159961492 159961510 TCTGCAAGAACTCTGGAGG 59 159960720 159960738 TCACAGCTCTTTCCTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 3 2 2 80 1 218734759 218734778 GCTTGCTCCAAACCAATACC 60 218733325 218734719 AGAACATGTCCAATATAACGCC 59 NA Rattus norvegicus 81 Pirt ENSRNOG00000037852 ENSRNOT00000057503 1 1 1 144 10 53466895 53466913 AACTCATTGCCAGCTTCCT 60 53481265 53481283 ACCTCTCGTCTACCTCCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdkrb1 ENSRNOG00000004488 ENSRNOT00000005953 1 1 1 134 6 129438235 129439358 TTTCTATCCGGACCACAGC 60 129439456 129439474 AGGAGGTAATGTTGGCAGG 59 NA InUTR Rattus norvegicus 81 Prrt2 ENSRNOG00000029366 ENSRNOT00000049044 1 1 1 86 1 198452717 198452735 AAGCTCTTAAGCATCGTGG 58 198452499 198452667 CCCTCACTTATACACGCCT 59 NA InUTR Rattus norvegicus 81 Scube1 ENSRNOG00000010617 ENSRNOT00000017727 1 1 1 80 7 124504037 124504478 CCTATGACGAGGACTACCAG 59 124503976 124503994 TCTCCTGATGGTTCTCCGA 60 NA Rattus norvegicus 81 Lax1 ENSRNOG00000028250 ENSRNOT00000029533 3 1 1 143 13 50164805 50165666 CAGGTCAAGCAACTTAGAAAGAG 60 50165768 50165787 TTCTTGTGATCTCTGGAGGG 59 NA InUTR Rattus norvegicus 81 Olr502 ENSRNOG00000052035 ENSRNOT00000083628 3 1 1 60 3 73754813 73754832 AGGATGAACTCTTCTGAGGG 59 73754772 73754791 CTGTCAGATGAGATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 3 1 1 113 9 98113427 98114096 TCCATGGAGACAAGAACCC 59 98114173 98114191 AAGTCCAGTGACATCCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Nisch ENSRNOG00000018823 ENSRNOT00000036910 2 1 1 80 16 7274578 7274597 ACCAGCAATATTCGAGAGCA 60 7273188 7274535 ACAGTGACTCATCTCCACC 59 NA Rattus norvegicus 81 Pbp-ps ENSRNOG00000052369 ENSRNOT00000084901 1 1 1 60 20 2182476 2182496 GTGACAAACTCATCCTTACCA 58 2182436 2182456 GCTGCTATATCGAACTTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784,ENSRNOT00000087085 1 2 2 80 20 20640847 20641342 CAAGTCAGCAGACAACCAG 59 20640785 20640803 TGGTAGTGGTCTTCCTCCT 59 NA Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 1 2 2 80 2 197953207 197956559 GCTTAACCCTCCAGTTGAC 58 197953145 197953164 CTCCGAAGTTTCTTCTGCTC 59 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476,ENSRNOT00000065743 1 2 2 90 9 94323144 94324704 CTATGTGGGAGGATGATGCA 59 94324757 94324775 ATGAGATTCTCCCAGCAGC 60 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000083572 2 1 2 81 19 57651077 57651816 AAGGACCTTGTAGAGACTCTC 58 57651859 57651877 GTCCTTCTCGGTCTTTGTC 58 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000030902 ENSRNOT00000066349 2 1 1 60 4 162497619 162497639 TCTCATGAAATGGAAGGACTC 58 162497579 162497599 CATATTCACCTCCTTTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980 1 1 2 80 20 25992702 26161908 CTCCAGGGAATGTGAGATACC 60 26161948 26161968 CCACAGTAACTTATTGTGGGC 59 NA Rattus norvegicus 81 Fbxo46 ENSRNOG00000008815 ENSRNOT00000012082 3 1 1 60 1 80042753 80042771 TCTCTACAGCAGCTTCAGG 59 80042792 80042813 TTGATAACATACCACGTGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl1 ENSRNOG00000005763 ENSRNOT00000007623 1 1 1 80 7 29286970 29288387 GACAGACAAGTATCAGGCCA 60 29288430 29288448 GGTCACAACTGTCAACGAC 59 NA Rattus norvegicus 81 Snrnp200 ENSRNOG00000012157 ENSRNOT00000043895 1 1 1 80 3 119659762 119660061 TGATTGACAAACGCATGTGG 60 119660099 119660122 CAATCTTCTTCACTACTTCCTCAG 59 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000029949 ENSRNOT00000044152 1 1 1 84 6 129056981 129057001 ATTAGGGAAGTCTTCTCCCAG 59 129057046 129057967 CCTTGTGGACTACCTGAGAG 59 NA Rattus norvegicus 81 Moap1 ENSRNOG00000033970 ENSRNOT00000038816 1 1 1 60 6 126621382 126621405 GTCAGATACCTTACTACTTACCAG 58 126621345 126621364 ACCTCAGAACATAGGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 2 2 2 80 4 162399101 162400132 TAACAAATTGCTTCCCATCCG 59 162400172 162400192 ATGTAGTCTCTGCTACTGCTG 59 NA Rattus norvegicus 81 Ormdl3 ENSRNOG00000030445 ENSRNOT00000049621 3 1 1 81 10 86547463 86547787 ATTGTGCTGTACTTCCTCAC 58 86547401 86547420 CACTCATCAAGGACACAGTG 59 NA Rattus norvegicus 81 Arl6ip5 ENSRNOG00000006818 ENSRNOT00000010185 3 1 1 82 4 129574465 129574483 CGTGTAGTGAGCAATCTGC 59 129574529 129593038 CTCAGAAACCCAACGACTG 59 NA Rattus norvegicus 81 Steap1 ENSRNOG00000000017 ENSRNOT00000000018 2 1 1 81 4 25443017 25443035 TGGCTGTGACATCTATCCC 59 25443079 25446061 ACAATTCCCAGTTTGCTCTG 59 NA Rattus norvegicus 81 Olr1657 ENSRNOG00000059328 ENSRNOT00000092195 2 1 1 60 17 44947887 44947906 ACTTTCTCTGTGAAATGCCA 58 44947846 44947864 TCCAAGACCATAGTGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aprt ENSRNOG00000014405 ENSRNOT00000064180 2 1 1 80 19 55387616 55387828 TCTAGAGTATGGGAAGGCTG 58 55387555 55387574 AGATCATCCACAATGACCAC 58 NA Rattus norvegicus 81 Znhit3 ENSRNOG00000027818 ENSRNOT00000039481 1 1 1 80 10 72233089 72234030 AAACAAAGGTGACGACTCC 58 72233027 72233048 TTTAAACTCTGCACAGACACTC 59 NA Rattus norvegicus 81 Znhit3 ENSRNOG00000027818 ENSRNOT00000039481 3 1 1 80 10 72233088 72234030 AAACAAAGGTGACGACTCCT 60 72233027 72233048 TTTAAACTCTGCACAGACACTC 59 NA Rattus norvegicus 81 Pcsk4 ENSRNOG00000016405 ENSRNOT00000022358 3 1 1 80 7 12247615 12247633 ACCAAAGGTTACCAGGAGG 59 12247675 12247912 CTGGTCATCAGGAAAGATCTG 58 NA Rattus norvegicus 81 LOC499823 ENSRNOG00000029652 ENSRNOT00000046112 1 1 1 80 3 71445645 71445663 CAGGCAGAAACTGGAAGGA 60 71445705 71445822 TCTGTACCCAGATCTTCTGGA 60 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 3 2 2 80 9 113584902 113584920 TCGAAGGAGGATGTTTCCA 58 113583687 113584858 GATCTCATTCTCCTGGGCA 59 NA Rattus norvegicus 81 LOC681385 ENSRNOG00000043494 ENSRNOT00000067576 3 1 1 80 3 5280426 5280670 AACACTTTCATGTCTGGTGG 58 5280365 5280386 GTTACTATATTGACCAGGCTCC 58 NA Rattus norvegicus 81 Grcc10 ENSRNOG00000025810 ENSRNOT00000019570 1 1 1 99 4 157265337 157265355 CAAGATGCTGCAATTCGTG 58 157264600 157265275 AAACTTAAGGACACCTTCCC 58 NA Rattus norvegicus 81 Olr115 ENSRNOG00000046188 ENSRNOT00000040224 2 1 1 60 1 168724892 168724910 CCTTGTCTCCTATACGCCT 58 168724850 168724870 GACCTTCTTTCCAATTCGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scrib ENSRNOG00000032574 ENSRNOT00000045280 2 1 1 80 7 117106628 117106649 GGAAAGAAGTTTGACTACAGGG 59 117106315 117106587 CACGAAATCTGGTGACTGG 59 NA Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000066382 1 1 2 80 14 33541956 33541974 ATATTCACACGCTAGCCCA 59 33541212 33541913 GCAGGTGTTTACTAAGAGCC 59 NA Rattus norvegicus 81 RGD1559951 ENSRNOG00000003227 ENSRNOT00000004303 3 1 1 64 X 11748872 11749492 TGCTTGGACTTCAGTTCCA 59 11748826 11748844 CCGTTGATCCCAAGATTCC 58 NA DesignNoJunction Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857,ENSRNOT00000019568 1 2 2 80 1 141667521 141667540 AGGTCATGGAACTCGAACTG 60 141666808 141667483 GTTTGGCTAAGGAATCTATGAAGG 60 NA Rattus norvegicus 81 Atl3 ENSRNOG00000021203 ENSRNOT00000028787 3 1 1 80 1 222773700 222775008 TAAGCGTTTACAGGTGAAGG 58 222775050 222775069 ACATCCGAGAAACATGAGTG 58 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000003660,ENSRNOT00000046049 1 2 2 80 1 63558873 63558892 GAGTTGAATCTGCAACAGGT 59 63557448 63558832 GGAGTTTAACTTCAAGCAGTG 58 NA Rattus norvegicus 81 Olr1596 ENSRNOG00000057400 ENSRNOT00000089352 1 1 1 60 13 92250285 92250305 ACATCTTCTGTGACTTCCTCC 60 92250327 92250345 ACGATGGTGTGGGTATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr149 ENSRNOG00000017138 ENSRNOT00000023002 2 1 1 60 1 169371701 169371719 GTTCCACATCATGTTCGCC 60 169371659 169371679 GACAATAGGGTTCATTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215,ENSRNOT00000084173,ENSRNOT00000064174 1 3 3 80 4 161734324 161734710 CACAGGAGACAGTAGGGAG 59 161734262 161734280 ACGTTCTTGTTGTGGATCC 58 NA Rattus norvegicus 81 Chst5 ENSRNOG00000021521 ENSRNOT00000026262 3 1 1 116 19 44135290 44135309 CTGAGCTGCTCATTGTATGC 60 44116916 44116934 ACTACAGTGCTGGAGAAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017875.1 ENSRNOG00000052759 ENSRNOT00000072888 1 1 1 96 15 32160405 32160614 GTTTAATTGGGTGAGCAGC 57 32160673 32160692 ACTGAATGTGCAGTTGAGAG 58 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317,ENSRNOT00000079407 2 2 2 80 5 165415731 165415749 TTCCACTCCGACTACTCCA 60 165415792 165416366 TCTGCATTCATCCACATCCT 59 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048370 ENSRNOT00000043828 3 1 1 60 1 68670766 68670787 GTTCAACACATTCACAGTTCTC 58 68670808 68670826 GAGTGGCTCTGAACTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndfip2 ENSRNOG00000024022 ENSRNOT00000039423 2 1 1 80 15 89445317 89447122 GACGCACCTCAAAGAAACC 60 89447166 89447184 ATTGCCTACTCTGAGCTGC 60 NA Rattus norvegicus 81 Rpgr ENSRNOG00000003013 ENSRNOT00000067603 3 1 1 80 X 14325678 14325698 TTGGCTTCTTTACACCTAGTG 58 14323426 14325637 TTCCATCCTCAGTTAGAGCA 58 NA Rattus norvegicus 81 Adh6a ENSRNOG00000012281 ENSRNOT00000016556 3 1 1 80 2 243591529 243593179 GAAACCAGGAGATAAAGTCCTC 58 243593220 243593238 AAGTTTCCTTTGAGGTGCA 58 NA Rattus norvegicus 81 Rpl13 ENSRNOG00000015335 ENSRNOT00000020635 1 1 1 88 19 55918418 55918436 CTCCGAAGAAGGGAGACAG 59 55918958 55919846 TTTGTACACATTCCGGATGG 58 NA Rattus norvegicus 81 Sdr39u1 ENSRNOG00000020544 ENSRNOT00000064643 1 1 1 80 15 34565845 34565863 CACTTGCTAGCTAAAGCCA 58 34565020 34565802 CTGGTAGTAAGCTACACCTG 57 NA Rattus norvegicus 81 Lrrc10b ENSRNOG00000030180 ENSRNOT00000050716 2 1 1 60 1 226501723 226501741 GGAGGAGATAGAGGAGCTG 58 226501681 226501699 CTCCAGCTTGTTGAAGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1621 ENSRNOG00000008800 ENSRNOT00000011632 2 1 1 60 15 27422438 27422456 GTATCTGCTGGGTGAGTGG 60 27422477 27422498 AGTTGGGAGATGAGGATAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691272 ENSRNOG00000043229 ENSRNOT00000064531 1 1 1 80 X 124052281 124052299 CAATACCCTGATGCACTCC 58 124045923 124047476 GTTGAACCAAATCTTTACGGTG 59 NA Rattus norvegicus 81 LOC100359986 ENSRNOG00000025536 ENSRNOT00000039731 3 1 1 60 15 52712705 52712726 CGGAAATCGTAATGAGGATGAG 59 52712666 52712684 CACGTAAGTTACCCGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr4 ENSRNOG00000004641 ENSRNOT00000006181 2 1 1 60 3 142740670 142740688 AATCTGTTTGTCACCAGCC 58 142740712 142740730 CATAGCTGAGGATGAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgals12 ENSRNOG00000021207 ENSRNOT00000059154 3 1 1 80 1 222901837 222901855 TGTCAACTGACGAACACCT 59 222899306 222901795 CATAAGGAATCACAGGGTGGA 60 NA Rattus norvegicus 81 Lrrc23 ENSRNOG00000026309 ENSRNOT00000051613 3 1 1 80 4 157303672 157303692 TCATTACTCTGCAAGATTGGC 59 157302915 157303630 GATGTCTGTGAGGTCCCTG 60 NA Rattus norvegicus 81 Olr834 ENSRNOG00000015646 ENSRNOT00000020943 2 1 1 60 5 59207513 59207532 ACTTCACCTGTGAGATCCTG 59 59207472 59207490 TCGCTGACTGATGTATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1645 ENSRNOG00000039434 ENSRNOT00000060427 3 1 1 60 15 28934771 28934789 TCTTTCACCTCACTCACCA 58 28934729 28934750 AGAAGTTGTCAATCTCATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910565 ENSRNOG00000033358 ENSRNOT00000051671 3 1 1 80 1 81549443 81549462 GTCCAACCTTGTTCTATGCC 59 81549103 81549401 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Mir759 ENSRNOG00000040381 ENSRNOT00000062134 2 1 1 68 15 62025510 62025528 AATGCCTAAACTGGCAGAG 58 62025560 62025578 TGTTTAAACAGCCAGTGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmmr ENSRNOG00000059894 ENSRNOT00000085499 1 1 1 80 10 25880944 25881053 CAAAGATGAGGAGCATGATGG 59 25880884 25880905 TAGACTCAATGAGGTCCTTCTG 59 NA Rattus norvegicus 81 Wdr26 ENSRNOG00000003723 ENSRNOT00000005059 1 1 1 80 13 99509680 99509698 AGTCCAGATGACAGCTACC 59 99506754 99509637 TTCTCCCGTTTGTACATTCC 58 NA Rattus norvegicus 81 Atpaf2 ENSRNOG00000003719 ENSRNOT00000004948 3 1 1 81 10 46776296 46783603 GCCAACAGAAAGGAAGAGG 59 46776066 46776086 TCTGTGGTCCAGGTTTATCTC 59 NA Rattus norvegicus 81 Cnp ENSRNOG00000017496 ENSRNOT00000023872 1 1 1 80 10 88494668 88494688 GCACTGTACAACCAAATTCTG 58 88494730 88495962 GATCTCCTCACCACATCCT 58 NA Rattus norvegicus 81 Zfp939 ENSRNOG00000037366 ENSRNOT00000039649 1 1 1 133 1 95402789 95403888 TTATTGAAGCAGACCTGAAGG 58 95403983 95404001 TTTCTTACGTGCGTGACTC 58 NA Rattus norvegicus 81 Capn10 ENSRNOG00000045623 ENSRNOT00000074160 3 1 1 80 9 100111901 100112107 CCAGAATAGACAGACAGTCCA 59 100112399 100112417 TCATCACTGCCATGAAGGA 59 NA Rattus norvegicus 81 Awat1 ENSRNOG00000026231 ENSRNOT00000076053 1 1 1 80 X 70409475 70409750 GAAGACTCCAAATCAAGGTGG 59 70409790 70409810 GGGAAATAATCCCTGATGTGG 59 NA Rattus norvegicus 81 Fmod ENSRNOG00000003183 ENSRNOT00000004382 1 1 1 92 13 50878438 50878456 CTTGTCCTACAACCAGCTG 58 50878510 50883601 ATGGAGAACTCATTGATCCTG 58 NA Rattus norvegicus 81 Bcl2l10 ENSRNOG00000009308 ENSRNOT00000012409 2 1 1 82 8 82289097 82289116 TACAATCGACTCACAGGACG 60 82294132 82294151 GGGTTCTTGAAGAATTGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Rhno1 ENSRNOG00000028517 ENSRNOT00000039086 2 1 1 91 4 161681558 161681578 ATTATGAATCTCACCAGCAGC 59 161680561 161681505 AGGTAACACCCAGGAAGTG 59 NA Rattus norvegicus 81 Dock3 ENSRNOG00000014576 ENSRNOT00000019867 3 1 1 80 8 115759636 115779983 GGTTTACACATGTAACAACGAG 58 115759577 115759597 GCAGAGTACTTGGTACTTGAC 59 NA Rattus norvegicus 81 Prg2 ENSRNOG00000008394 ENSRNOT00000011168 2 1 1 80 3 72386560 72387174 TTGCTCTTCATCTAAGCTCTG 58 72387216 72387234 ATATCTCTGCTTCCCGAGG 58 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 1 2 3 119 9 111244242 111244260 TTTGATTTGTTACGCGCCA 59 111244342 111244704 CATCACGATATTGCCAAGGA 58 NA Rattus norvegicus 81 AABR07041481.1 ENSRNOG00000005665 ENSRNOT00000007474 1 1 1 76 X 131381688 131381706 CTGTGACAACCTCAAGCTG 59 131381757 131381775 CAAAGCCTTGAACCCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ap1g2 ENSRNOG00000025619 ENSRNOT00000033977 2 1 1 80 15 33764172 33764691 TCTTGCAGGTCCAGATACTC 59 33764111 33764129 GCAAGTCGTTCATGGTCTC 59 NA Rattus norvegicus 81 Cyp4x1 ENSRNOG00000043513 ENSRNOT00000011985 2 1 1 80 5 133942369 133942389 ATTAACTTGATGACCCTGGAC 58 133942232 133942329 CTCATAGGTGCCGTTTATCTG 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880,ENSRNOT00000054753 2 2 2 80 1 253251951 253251971 AGATTGTGCTGAGCTAAAGGA 60 253252012 253253003 CGCATTACAGATACCTCCCT 59 NA Rattus norvegicus 81 LOC499573 ENSRNOG00000033449 ENSRNOT00000041334 1 1 1 80 2 95084405 95098618 TGAAGAATTTGGACAGTGCTC 59 95084345 95084364 ATAGCTGCTGTGAGGTTCTG 60 NA Rattus norvegicus 81 Cklf ENSRNOG00000012752 ENSRNOT00000017127 1 1 1 85 19 912355 912377 CCATCATTCTCTTTCTCATAGCC 59 908333 912312 GATAACATCAAGCAAAGGCCA 59 NA Rattus norvegicus 81 Mir22 ENSRNOG00000035620 ENSRNOT00000053743 3 1 1 60 10 62299609 62299627 TAGTTCTTCAGTGGCAAGC 58 62299651 62299669 ACAGTTCTTCAACTGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1652 ENSRNOG00000018492 ENSRNOT00000024940 2 1 1 60 17 2704728 2704748 AACCCTCTCCTATACTCTGTG 58 2704688 2704706 ACCCTGATACTAGCAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 1 2 2 146 1 222170574 222170593 TGAACCTGAGAAGCTGTACG 60 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA Rattus norvegicus 81 Faxc ENSRNOG00000010106 ENSRNOT00000013599 3 1 1 80 5 36077001 36082014 CCTGGTCATTAGGAAGCAG 58 36082057 36082076 ACACCATTGTTAGGTCTTGC 59 NA Rattus norvegicus 81 Auts2 ENSRNOG00000000885 ENSRNOT00000001182 1 1 1 80 12 28229422 28229440 CAATCCTATCGATGTGGCT 57 28229483 28230620 AAAGGATCTGTCAACCTTGG 58 NA Rattus norvegicus 81 Otor ENSRNOG00000028721 ENSRNOT00000034252 3 1 1 80 3 137154597 137154618 GCAGCAGATCTATGTTTATTCC 57 137154659 137155598 TGGTCACCATAAACACTGC 58 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000086283 2 2 5 103 20 4045455 4045473 CAACTACGAGGAGACGGAG 59 4046885 4046903 GCAAGTTGTGGTGGTTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 3 2 2 80 4 88712896 88712917 ACAAGGAGTATTGGAGATTTGG 58 88712957 88713825 GTGGTAGAGCTTAATCCTGG 58 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 3 2 2 81 7 11502011 11502029 AGACAGATGTAGACCCAGC 59 11501766 11501965 CATGTTGGTACCTGGTGTG 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 1 2 2 80 1 84157410 84157429 TGGCATCCTTCAAGATCCTG 60 84156921 84157369 CATAGGGACCAATGTCATTGC 60 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000090402,ENSRNOT00000089305 2 3 3 80 1 87081838 87082589 CAAGATGGAGGAGATTGGG 57 87081776 87081794 TCGTACTGCTTCAAGTGAC 58 NA Rattus norvegicus 81 Tspan8 ENSRNOG00000004411 ENSRNOT00000005909 2 1 1 80 7 58831035 58831162 CTTTCAAATCTGAATCTAGCCG 58 58831202 58831221 CCTCATTGCTTGTTTCTGAC 57 NA Rattus norvegicus 81 Cfap43 ENSRNOG00000036585 ENSRNOT00000031925 1 1 1 80 1 267522982 267523001 CCAGAAAGCAAGAGAAGACC 59 267522343 267522940 CTGCGATCCAGAACTTTGTC 59 NA Rattus norvegicus 81 Spata33 ENSRNOG00000038239 ENSRNOT00000058216 3 1 1 92 19 56010402 56010420 GACAAGGAGTCTCAGCCTG 60 56010474 56022195 GTCAGGTTTGTCTTCAGAGGA 60 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 3 2 2 80 6 134986623 134986641 ACACTCAACGTCTTAGCAG 58 134986685 134987766 CTCTGTGATCAAGTGCTCC 58 NA Rattus norvegicus 81 Glra3 ENSRNOG00000049792 ENSRNOT00000075026 1 1 1 80 16 37868766 37908117 CGCACTGTTACTGAGTTTGG 60 37868705 37868725 AAATCAGAAGGTGACATTGGG 59 NA Rattus norvegicus 81 Col9a3 ENSRNOG00000009531 ENSRNOT00000013105 3 1 1 84 3 176109377 176110051 TGGTGAGAAGGGTAATCCTG 59 176110228 176110246 TCCTTGCAATCCTCTTGGG 60 NA Rattus norvegicus 81 Rere ENSRNOG00000017940 ENSRNOT00000024443 3 1 1 80 5 167526208 167526227 GCTGCTCGTGAATTTAAAGC 59 167526268 167547705 ACTATTCAGCCTCCTTGTCTC 59 NA Rattus norvegicus 81 Olr686 ENSRNOG00000045702 ENSRNOT00000042640 1 1 1 60 3 78010089 78010107 GTGTTTGCCAATAGTGGGT 58 78010127 78010149 CATAGGAGACAAGCAAGATAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr686 ENSRNOG00000045702 ENSRNOT00000042640 2 1 1 60 3 78010089 78010108 GTGTTTGCCAATAGTGGGTC 60 78010127 78010149 CATAGGAGACAAGCAAGATAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn4b ENSRNOG00000026679 ENSRNOT00000030152 1 1 1 81 8 49449146 49449165 CCAGCTGTTATGGCTTTGAG 59 49449209 49449763 ATCCCGTCGATGAGAATCC 59 NA Rattus norvegicus 81 Sord ENSRNOG00000017291 ENSRNOT00000023350 2 1 1 80 3 114201219 114202394 TCAAGTAGTGGTGATTGACCTC 60 114202434 114202453 GCAACCTGGATGGTAAAGTC 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 2 2 4 127 2 118563167 118565894 CGTACATGCAGAGTGTATGG 59 118565984 118566002 CAGGCAAGGGTACTGAGAG 60 NA Rattus norvegicus 81 Nubp1 ENSRNOG00000002574 ENSRNOT00000003479 1 1 1 80 10 5336607 5337100 CTCCAGTGTATGTGGAGGAC 60 5336546 5336565 TCCAGATGACAGCATCATCC 60 NA Rattus norvegicus 81 Olr1l ENSRNOG00000053124 ENSRNOT00000087016 3 1 1 60 1 64481763 64481783 GGAATAGCTTTCTTCAACACC 57 64481805 64481823 TGAGGCAGTAGATGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 2 2 2 80 17 81240985 81244437 GAACCGGAAATGATTAAGACAG 58 81244476 81244496 TGGTTCTGGTTCTATTGTCTC 58 NA Rattus norvegicus 81 Plk5 ENSRNOG00000034102 ENSRNOT00000042204 3 1 1 94 7 12218978 12218996 AGTGCGCTACTACTTTCGG 60 12218164 12218924 GGAAGAAATTACTGGGTTTCAGG 60 NA Rattus norvegicus 81 Cnga1 ENSRNOG00000004778 ENSRNOT00000006469 2 1 1 80 14 38156632 38156653 AAGAATCAGAGAATGAGGACTC 57 38156694 38158189 GCAAGTAATGCTCCCTCTG 58 NA Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000086096 3 1 2 117 10 110138604 110144866 CCGTAACAGGTGAAACCAG 59 110144947 110144965 TGAAACAGCCAAAGAGGAC 58 NA InUTR Rattus norvegicus 81 Ndc1 ENSRNOG00000010620 ENSRNOT00000014275 2 1 1 80 5 127003814 127003835 AGATAGATTTGGAGTTGTCCAG 58 127003875 127017693 TATTTGTCAACAGCCTCCTG 58 NA Rattus norvegicus 81 Dazap1 ENSRNOG00000031387 ENSRNOT00000046886 1 1 1 85 7 12299748 12300411 GTTTGGAGTGGTCACAGAG 58 12297122 12297143 CGTCCTCGAAAGTAATAAATCC 57 NA Rattus norvegicus 81 Olr24 ENSRNOG00000050054 ENSRNOT00000042931 3 1 1 60 1 150101070 150101094 CTTCCTAGTAATGTATCTAGCAGTC 58 150101034 150101055 AGTGACAAGAGTGATGATAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh2 ENSRNOG00000015602 ENSRNOT00000021170 3 1 1 80 18 8179626 8179648 AGACCCAGAAGATGATGTAAGAG 60 8161290 8179588 AAGTCATAGTCCTGGTCTTCC 59 NA Rattus norvegicus 81 Tex19.1 ENSRNOG00000036670 ENSRNOT00000054928 2 1 1 83 10 110346864 110346882 AGACATTGGAGCAAGTGTG 58 110346929 110347074 AACAGGACCGTAGACTCTC 58 NA InUTR Rattus norvegicus 81 Vars2 ENSRNOG00000000833 ENSRNOT00000091232 2 1 1 80 20 3598487 3598507 TTACAGAAGCAGCTTGATGAC 59 3598549 3598655 GAGGGAGGAAATCCTCTGC 60 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459,ENSRNOT00000016376 3 2 2 80 1 114320430 114320815 ATCAATGATGGAGTACGTCCT 59 114320856 114320875 TGCTTGTTGAACTTGGTGAG 59 NA Rattus norvegicus 81 Nle1 ENSRNOG00000008287 ENSRNOT00000011320 1 1 1 80 10 70255826 70255845 TGGGTCCTTAGCATATCCTG 59 70255622 70255783 GTCCCACAGGAGAATCTGG 60 NA Rattus norvegicus 81 Dnah9 ENSRNOG00000004171 ENSRNOT00000005583 3 1 1 80 10 52487341 52496207 GGATGCCATACATCATATCTGTC 59 52487283 52487301 CCACCTACACCAACTAGCA 59 NA Rattus norvegicus 81 Brpf1 ENSRNOG00000008142 ENSRNOT00000011246 3 1 1 80 4 145276589 145276607 CGGAGTAGCTCAGACTCTG 59 145276651 145277752 CTTTGAGGGTGTTGTGCTG 59 NA Rattus norvegicus 81 AABR07034742.1 ENSRNOG00000001893 ENSRNOT00000002599 3 1 1 60 11 86421315 86421337 GAGAAGGCTAAAGAAATCCTGAC 59 86421357 86421375 TGACTGGACATCGAACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h4b ENSRNOG00000046636 ENSRNOT00000074109 2 1 1 67 17 43673317 43673335 TAAAGGCCTTGGGAAAGGT 59 43673366 43673384 TGATGCCCTGGATATTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbl3 ENSRNOG00000013429 ENSRNOT00000018405 3 1 1 80 10 14069938 14070044 AGTTGCAGAAACAGTTTGCT 59 14069877 14069898 CGATGATGTGGGAATCATTAGG 59 NA Rattus norvegicus 81 Pramef8 ENSRNOG00000027278 ENSRNOT00000037875 3 1 1 85 5 162195614 162196452 TTGTTCAGGTACCTGAAGACC 60 162196498 162196517 TGGGACAAGGAACTCAAGTC 60 NA Rattus norvegicus 81 Ppm1m ENSRNOG00000046535 ENSRNOT00000074934 3 1 1 94 8 114890310 114890329 GGATCATCACATGAGAGGCT 59 114889873 114890090 GTAACCGAGCCTGTCTACC 60 NA Rattus norvegicus 81 LOC100909631 ENSRNOG00000048418 ENSRNOT00000073141 3 1 1 81 3 159114487 159114735 GATAGGAATCTATGGTGGGAC 57 159114778 159114796 GAGGAACTGGCCTTTATCG 58 NA Rattus norvegicus 81 Tacr1 ENSRNOG00000005853 ENSRNOT00000007984 2 1 1 80 4 113248173 113340313 GCCTTCGACAGATACATGG 58 113340355 113340375 GACAAAGATGACCACTTTGGT 59 NA Rattus norvegicus 81 Adgrg5 ENSRNOG00000039891 ENSRNOT00000061270 3 1 1 80 19 10504354 10504676 CTTCCAGAGTGAGGTTTATCC 58 10504294 10504312 TCTGCAAGGTCAAGTTGTG 58 NA Rattus norvegicus 81 Rps4y2 ENSRNOG00000031041 ENSRNOT00000043543 3 1 1 60 4 182746127 182746145 ATGTGAAAGATGCCAACGG 59 182746169 182746187 CCGATCACGAAGATGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 1 3 3 80 13 113847486 113847504 GAAAGGAGACAGCAGTGTG 59 113844636 113847443 CAGGATTTCACCTTGAAGCA 59 NA Rattus norvegicus 81 Rpl35 ENSRNOG00000014272 ENSRNOT00000019162 3 1 1 81 3 23297405 23297423 TCTGAAGGTGGAACTGTCC 59 23296869 23297362 TACGACTCGTATCTTGGAGAG 59 NA Rattus norvegicus 81 Rn60_10_0700.6 ENSRNOG00000037114 ENSRNOT00000055958 1 1 1 60 10 70367055 70367073 CTGAAGTCTCACATGCCAG 58 70367097 70367115 TTTCGCCATCAAAGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr407 ENSRNOG00000054399 ENSRNOT00000082831 1 1 1 60 3 16242055 16242074 TCTCTTTGCTCAACTGACTC 58 16242097 16242115 CAGGTCACAGAAGTAGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417,ENSRNOT00000082891 1 2 2 80 18 11850828 11850847 TGCTTGTAAAGAAGTCGTCC 58 11849678 11850785 CACTCCATCAGGTTCACTC 58 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 3 2 2 134 5 157504124 157517495 CTTGGAAACCTTGCAGGTG 59 157504008 157504026 AAGAACATTCCCAGCAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Fam13a ENSRNOG00000007947 ENSRNOT00000010898 2 1 1 80 4 89262791 89262813 CCTTTATCACCTTTCTACCTGAG 58 89235511 89238410 GGTTCTTTCTAAGAGTTCTCCAG 59 NA Rattus norvegicus 81 AABR07015006.1 ENSRNOG00000021986 ENSRNOT00000032337 1 1 1 80 14 44790478 44790498 GTGTCAAGAGAAGATTCTCGG 59 44790538 44790562 AGTGTCTTCTTTAATACCGCC 58 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454,ENSRNOT00000086335 2 2 2 80 18 6026842 6026860 GGGCTATAGACCAACACAG 57 6021925 6026799 TTTCCATATTGTCCCTGGTC 57 NA Rattus norvegicus 81 RGD1564854 ENSRNOG00000018832 ENSRNOT00000025501 1 1 1 80 3 13951544 13953777 TTCGCCTATATGAGGTTGAC 57 13953819 13953838 ATAGCGAGTATCTCCTTGGT 58 NA Rattus norvegicus 81 RGD1564854 ENSRNOG00000018832 ENSRNOT00000025501 2 1 1 80 3 13949185 13949207 CATCTTGCCTAAGATCTCTACAC 59 13951154 13951518 GTCTTTATTAGCAGTGAGACCT 58 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808,ENSRNOT00000072263 3 4 4 81 5 127607808 127610609 CACTATGGGCATCATGCTG 59 127610654 127610672 GACGGACTCATTAAGGCAC 58 NA Rattus norvegicus 81 Mki67 ENSRNOG00000028137 ENSRNOT00000038176 1 1 1 80 1 207997027 207997046 TCACTTTGGACAATGAACCT 57 207994225 207996986 TGTCTTCATCCTTCTTCAGAG 57 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000085670,ENSRNOT00000083535 1 3 3 80 2 250775212 250775233 ACGGTACATACATTTCACTCCA 60 250774823 250775171 TGGACAAAGACTCTGCCTC 59 NA Rattus norvegicus 81 RGD1311747 ENSRNOG00000011293 ENSRNOT00000015130 3 1 1 80 16 32535183 32535202 ATGATCCTCCTGAGTTCCAG 59 32534045 32535143 CAGGAGAATCTCTGAAATACCC 58 NA Rattus norvegicus 81 Mir350 ENSRNOG00000047684 ENSRNOT00000071079 1 1 1 60 13 43827514 43827532 TAAAGTGCACGTGCTTTGG 59 43827554 43827574 TGAAAGTGTATGGGCTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362432 ENSRNOG00000019811 ENSRNOT00000026932 3 1 1 80 16 8324510 8335452 AAATGTACAGGTGGTCTTCGA 60 8324450 8324472 GTTATACAGTGCATAGACACTGG 59 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165,ENSRNOT00000012102 2 2 2 80 5 126664811 126666442 CTCCTTGAGGGTATGAAGC 57 126664749 126664769 AAGACTAAGCACTTTCTTGGG 58 NA Rattus norvegicus 81 Sema4f ENSRNOG00000006784 ENSRNOT00000009269 3 1 1 80 4 113760614 113760633 CATTGTCAATGCCTCTCACC 59 113756138 113760574 AAACTGGACACATCAATAACCC 59 NA Rattus norvegicus 81 Vom1r19 ENSRNOG00000032996 ENSRNOT00000042702 1 1 1 60 1 61095473 61095492 TCTCAGTGTATTCCAAGCGA 59 61095512 61095533 CTTAAACCTTGCATATCTGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r12b ENSRNOG00000051440 ENSRNOT00000089068 2 1 1 80 13 51666074 51666092 AAGTAGAGCTTCAGTCCCT 57 51665807 51666031 TCTTCTTTCTCACTCGTGTC 57 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000073138,ENSRNOT00000016133 3 2 2 80 10 66212953 66214006 CTCAACAAAGCTCTCAGCA 58 66214050 66214068 CTCACTCTGCAGATTCTGG 58 NA Rattus norvegicus 81 Mccc1 ENSRNOG00000013293 ENSRNOT00000018942 2 1 1 80 2 122671181 122671199 GTAAGAAGGAGGCTGGGAG 59 122570328 122671139 AATGAATTCCACAGTTCCTGC 59 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 2 2 2 82 4 153936531 153936549 GATGATGCCTTTGTCCCAG 59 153936595 153937029 TACAGACGAACTGGCTGTC 60 NA Rattus norvegicus 81 Acta1 ENSRNOG00000017786 ENSRNOT00000024084 1 1 1 80 19 56674703 56674858 CCTTTATCGGTATGGAGTCTG 58 56674643 56674661 CCTTCCTGATGTCGATGTC 58 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471,ENSRNOT00000084420 3 2 2 82 20 34899948 34903658 TTTGTGTTTCAGGCTGATGC 60 34903698 34903721 CAGGTAATCAGTACAACTGTTACC 59 NA Rattus norvegicus 81 Rnase10 ENSRNOG00000010261 ENSRNOT00000013619 3 1 1 60 15 27933417 27933437 CAACAAAGAAATGGCAGTACC 58 27933457 27933477 CACTTCATCTTCACTGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qtrt1 ENSRNOG00000007158 ENSRNOT00000010030 2 1 1 81 8 22451729 22451747 ACAAGCAGAACCTCTTTGC 59 22451790 22452679 CTCTTGGTCATCTCTTTCAGG 58 NA Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000014921 2 1 2 80 9 105612349 105629397 CTGAAGTGGATACCAACAGC 59 105612288 105612307 CTTCAGTGCCATTGACAGAC 59 NA Rattus norvegicus 81 Klrb1c ENSRNOG00000007811 ENSRNOT00000010312 1 1 1 80 4 162548842 162548860 TTGGCTCTGAAACTTGGCT 60 162548901 162549547 TAGGAATCTCACGAAGACACTG 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984,ENSRNOT00000043079,ENSRNOT00000006393 3 4 4 80 7 78590937 78591394 GGTGTTACAGATCATTGTCTGG 59 78591434 78591453 TCTAAGAGTATCTGGGCCAC 58 NA Rattus norvegicus 81 Grm6 ENSRNOG00000000233 ENSRNOT00000000249 2 1 1 80 10 36357455 36357474 CCACCTGTATTATCTGGCTG 58 36357514 36358839 TGGTTTGGATGTAGATCTTCTC 58 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 1 2 2 80 4 163220741 163220761 GTCTATCTCGCAATCAGAGTG 58 163217926 163220701 TTCTGACTTGAAACGAGTTGG 59 NA Rattus norvegicus 81 Eif2b5 ENSRNOG00000038160 ENSRNOT00000002321 2 1 1 80 11 84087156 84087176 CACAGACAACTTTGACTACCA 58 84086859 84087118 ATCTGATTTCCTAGGATCTCCTC 59 NA Rattus norvegicus 81 Hsd17b3 ENSRNOG00000019096 ENSRNOT00000025850 2 1 1 80 17 1595076 1597079 TCTCAGAAGAGATTGAGAGGA 57 1595016 1595036 GGTCATAGATGTCTTCTCTGG 57 NA Rattus norvegicus 81 Themis2 ENSRNOG00000012965 ENSRNOT00000017340 2 1 1 80 5 150972586 150972941 GCACAGAATTCAGTGCTGAG 60 150972525 150972543 CGGGAGATGTGACTCAGTG 60 NA Rattus norvegicus 81 Wdr18 ENSRNOG00000012379 ENSRNOT00000016733 2 1 1 80 7 12561657 12561675 GGCAAAGAACCTAGCTACC 58 12561511 12561613 GCCTAGCATGTTCTTCTCC 58 NA Rattus norvegicus 81 Rn60_X_0774.1 ENSRNOG00000060085 ENSRNOT00000084086 1 1 1 80 X 77322838 77322857 ATCTTCCTCCTGAGTCTTGG 59 77322358 77322797 GACGATTGTCAAGAATGTTGG 58 NA Rattus norvegicus 81 Tor4a ENSRNOG00000009369 ENSRNOT00000012406 2 1 1 60 3 2409760 2409778 TCACCATTTCCACAATGCT 58 2409718 2409737 TGTGATCTCTATACCGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgmb ENSRNOG00000048190 ENSRNOT00000075401 1 1 1 80 1 57809623 57809644 CAATTACCTTTCGGTTCAAGTG 58 57797355 57809585 ATAATGGTGATCTTGTTCGTGG 59 NA Rattus norvegicus 81 AABR07045411.1 ENSRNOG00000049990 ENSRNOT00000071045 1 1 1 81 20 46715883 46716242 GACCACACCTCTGAGAACC 60 46716286 46716305 GAGCCTCTTTCCTCTCAGTG 60 NA Rattus norvegicus 81 AABR07070555.1 ENSRNOG00000049584 ENSRNOT00000039376 1 1 1 60 8 74868845 74877402 AGGTGACTTTATCATCTCTAGGC 60 74877422 74877440 TGGGTTCTCCTTCCTTGAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07070555.1 ENSRNOG00000049584 ENSRNOT00000039376 2 1 1 60 8 74868842 74877397 CCGAGGTGACTTTATCATCTC 58 74877417 74877437 GTTCTCCTTCCTTGACTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0747.2 ENSRNOG00000022281 ENSRNOT00000029178 1 1 1 60 X 73808256 73808277 AAATTCAAGTCCAGCTAGTTCC 59 73808217 73808235 AGGTCTACATGCTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr921 ENSRNOG00000050939 ENSRNOT00000071350 3 1 1 60 7 3900230 3900251 GAGAAATCGAACAGTAACAACC 58 3900271 3900290 TTGAAGCCGAATGTCATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm20 ENSRNOG00000014705 ENSRNOT00000054685 1 1 1 80 1 274563193 274563212 AAATGTGGCTGCTATCATCC 58 274563254 274565341 TCTGGACCATATCTGTCAGC 59 NA Rattus norvegicus 81 Lrrc4 ENSRNOG00000008098 ENSRNOT00000010673 3 1 1 60 4 56113709 56113728 TTGAGTACCTGTCCAAACTG 58 56113668 56113686 GGGATGCTCTCAATAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069282.1 ENSRNOG00000012119 ENSRNOT00000016174 3 1 1 128 8 15941974 15941994 CGTGAACTTTGTATTCGAGAG 57 15942084 15942104 GAGATCAAGTTCTGAGCCG 58 NA Rattus norvegicus 81 Cpn2 ENSRNOG00000024384 ENSRNOT00000048746 3 1 1 87 11 74057401 74057420 TTCTCTTCTGTTTCCGAGGA 58 74065288 74065306 AACATAACCAGGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Fkrp ENSRNOG00000016055 ENSRNOT00000021586 1 1 1 106 1 78736284 78739070 GAAACCTAGGGAGGATGCC 60 78736196 78736214 AGGTTGAGGATGATGGCTG 60 NA InUTR Rattus norvegicus 81 Fkrp ENSRNOG00000016055 ENSRNOT00000021586 2 1 1 107 1 78736285 78739071 TGAAACCTAGGGAGGATGC 59 78736196 78736214 AGGTTGAGGATGATGGCTG 60 NA InUTR Rattus norvegicus 81 Smad5 ENSRNOG00000022870 ENSRNOT00000016704 1 1 1 80 17 8316892 8318001 ATCTAGCAGAGATGTTCAGCC 60 8316832 8316854 CGGTTGTTCAGTTCATAGTACAC 60 NA Rattus norvegicus 81 Abcg4 ENSRNOG00000008862 ENSRNOT00000012534 2 1 1 80 8 48612173 48612307 ATGTTTGACAAGCTCTACATCC 59 48612114 48612136 CTTCAAATAGGGAATCAGGTTGG 60 NA Rattus norvegicus 81 Syt2 ENSRNOG00000004756 ENSRNOT00000006637 2 1 1 80 13 51575645 51576368 AGATCCAGAAAGTCCAGGTG 59 51576410 51576429 CGAAGATCTTTCCAATGGCT 58 NA Rattus norvegicus 81 Map3k12 ENSRNOG00000015134 ENSRNOT00000020437 1 1 1 80 7 144107411 144107649 GTCACCCAACATGCTAATCAC 60 144107351 144107369 CTCTTGTCACTCAGCTCCT 59 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 1 2 2 116 1 197999414 197999730 GAGCACTGGATTCCTTCAG 58 197999810 197999828 CAACCTTCCCTTCAGTCAC 58 NA Rattus norvegicus 81 Rfc2 ENSRNOG00000001457 ENSRNOT00000001989 2 1 1 80 12 25135780 25135800 AAAGTGCCATACACAGATGAC 59 25135120 25135738 CAAGTTGTTCAGAGCCTGG 59 NA Rattus norvegicus 81 RGD1561113 ENSRNOG00000022681 ENSRNOT00000034930 3 1 1 69 3 11408502 11410654 GAGTATGCTGCCATCAACTC 59 11408452 11408470 CGTTCTTCTCCTCCAGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026,ENSRNOT00000024900,ENSRNOT00000088041 2 3 3 80 2 199894257 199895347 GAGCCATATTAAGTGAATCCCTG 59 199894199 199894217 AAGTCTCATAGCCCAGGTC 59 NA Rattus norvegicus 81 Vom2r48 ENSRNOG00000028538 ENSRNOT00000039463 3 1 1 80 4 156326530 156349844 TACAACATTCCACAGATCAGC 59 156349885 156349904 AAACTGGTAAGGAGACTGGA 58 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000013443 1 1 2 82 3 6790704 6797057 AAGGTGATAACCGGGTCTG 59 6797103 6797121 CATGAAGTCCACCATGGAC 58 NA Rattus norvegicus 81 Vrk1 ENSRNOG00000005274 ENSRNOT00000036035 3 1 1 80 6 129890041 129890060 GTAAGGATGACGGCAAACTG 59 129890103 129897956 TCTTCCGCTTCTTTGAAGC 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 3 2 2 81 8 72743562 72743582 AACATAAGAAGAAACGGCTGG 59 72743621 72744257 GTAGTAATCTTGTAGCAACCTGG 59 NA Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000017101 1 1 2 80 X 123209904 123209924 GTATGATGACCTTTCTGACCT 57 123209963 123212609 CTTGAAGGTAAAGTGAACTGAG 57 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 3 2 2 80 8 116273328 116273348 GTCGTAGTATGATTGACGGAG 58 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 LOC102552705 ENSRNOG00000039459 ENSRNOT00000060470 1 1 1 60 18 30870692 30870710 GGAGAATACTGAGCCAGGA 58 30870734 30870752 TCCAGAATCTTTGTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 1 2 2 80 15 3094069 3094087 AAAGGTGAACTCGAAGAGG 57 3056949 3094026 ACATCATTTCCTGTAGCCAC 58 NA Rattus norvegicus 81 LOC100364791 ENSRNOG00000005447 ENSRNOT00000007379 2 1 1 98 10 74277411 74277430 TTTCAGGCATACCTACCCTC 59 74251117 74277352 CTGGAAGGACTTGGAAATGAG 59 NA Rattus norvegicus 81 Nubp2 ENSRNOG00000015090 ENSRNOT00000020504 1 1 1 82 10 14247021 14247039 CTCCCTTATGTCTGTGGGC 60 14246094 14246978 TTATCAGTGCATGTTTCTTGGG 59 NA Rattus norvegicus 81 Olr529 ENSRNOG00000054730 ENSRNOT00000057508 1 1 1 60 3 74503009 74503027 TCTCTGTGCTGTTTCTCCT 58 74502967 74502986 AGTATCATGCCTACGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lilrb3 ENSRNOG00000054954 ENSRNOT00000084439 3 1 1 80 1 63739161 63739183 CATCCTCATCTTCATCATTCTCC 59 63739223 63739519 TCTTTCTCTTTCTGGGCCT 58 NA Rattus norvegicus 81 RGD1560608 ENSRNOG00000043137 ENSRNOT00000066715 3 1 1 159 6 135859590 135859608 CTCTATCGTGGTGGAACCC 60 135860710 135860729 ATCATCTGCTTCCTTCCCTG 60 NA DesignNoJunction Rattus norvegicus 81 AC117101.1 ENSRNOG00000013292 ENSRNOT00000017738 2 1 1 60 15 28803122 28803142 CAGGGACATAGAGATCTGGAC 59 28803082 28803100 AATGCTTCTTGTTGGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr302 ENSRNOG00000045957 ENSRNOT00000051727 1 1 1 60 1 213071036 213071054 GCCCTAAGGTCATCATCCA 59 213071078 213071096 CTACAGGAGAGCAGGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000091096 2 1 2 82 20 4067218 4067663 TACCAACAAGGTTCCTGAGG 59 4067155 4067174 CTACAAAGCAGATGAGGGTG 58 NA Rattus norvegicus 81 Lrrc32 ENSRNOG00000015310 ENSRNOT00000020520 1 1 1 80 1 163449699 163453632 GTAGGACGGTGAACAAGGA 59 163453675 163453694 CTTGGATGTCCAATGAGAGC 59 NA Rattus norvegicus 81 Cfap74 ENSRNOG00000023627 ENSRNOT00000068525 2 1 1 80 5 172849493 172852062 AAATGTTCTCTGTCCCTGG 57 172852106 172852124 TGTGATCATCCGAGATGTG 57 NA Rattus norvegicus 81 Ell2 ENSRNOG00000027089 ENSRNOT00000032974 2 1 1 80 2 2514557 2516232 CATCTCCTCAGAAACGACC 58 2516274 2516294 TTGTCAGGTGAGATATTCGAG 57 NA Rattus norvegicus 81 Exoc3l4 ENSRNOG00000010111 ENSRNOT00000013460 3 1 1 82 6 135877150 135877569 GACATTCAGCCACTATTCAAGG 60 135877612 135877630 ACCACCTTGTCCATGAGTG 60 NA Rattus norvegicus 81 Duox1 ENSRNOG00000033348 ENSRNOT00000046843 2 1 1 80 3 114276602 114276621 CTACATTCCCTTTGATGCCG 59 114276662 114277168 GCACTGTGTAAGACTGTAAGG 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 2 2 2 80 19 10877648 10877670 GTATGGAAACCATTCACTGTACC 60 10877095 10877609 GTCGTAGCACATAACCTGGA 60 NA Rattus norvegicus 81 Rfesd ENSRNOG00000012810 ENSRNOT00000017098 1 1 1 80 2 2778834 2778945 CATTCGCTGCTACCATTCTG 60 2769926 2769948 GGGCAAACTATACATGATTGTCC 60 NA Rattus norvegicus 81 Mir381 ENSRNOG00000035493 ENSRNOT00000053616 1 1 1 60 6 133876607 133876626 GTACTTAAAGCGAGGTTGCC 59 133876647 133876667 TGCCCTTGTATATCCCATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000025381,ENSRNOT00000091370 1 2 2 80 17 5569766 5569784 ATCGAGAGGCTGATACACC 59 5569825 5571074 TTCTGGAGTGGTATAGTTAGGG 59 NA Rattus norvegicus 81 Dkk3 ENSRNOG00000016343 ENSRNOT00000022301 2 1 1 84 1 176974096 176976000 GTTCACAAGATAACCAACAACC 58 176974033 176974051 TCTTGCCTTCTCCATCCTC 59 NA Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 3 1 1 60 4 163089799 163089817 AGAGACCTGCAAATTCCAC 58 163088810 163089775 ATCCAATTCAGTCTGGTCG 57 NA DesignNoJunction Rattus norvegicus 81 Olr229 ENSRNOG00000046061 ENSRNOT00000075443 1 1 1 60 1 170694353 170694372 CTATCAAGGGCAGAACACAG 58 170694312 170694330 CACTTTCAGGAGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_11_0375.7 ENSRNOG00000051348 ENSRNOT00000076161 3 1 1 60 11 33858856 33858876 AGAAGAGGTTGACTCTCACAG 59 33858898 33858916 CATACAAGTCTGTGGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330,ENSRNOT00000056058 2 2 2 80 4 157146772 157147332 GCTAGAGTGTCAACCTGTG 58 157146710 157146729 AATACAGTGTCTTCTGGGTC 57 NA Rattus norvegicus 81 Stat5a ENSRNOG00000019496 ENSRNOT00000026662 3 1 1 80 10 88767361 88769580 AGAAGCCAACAATTGCAGC 60 88769622 88769642 AACGTTTGGTTGATCTGAAGG 59 NA Rattus norvegicus 81 Siglech ENSRNOG00000021499 ENSRNOT00000032254 3 1 1 83 1 114147256 114148124 CTTCTTCCTCAGCATGAGAC 58 114148170 114148188 TAATCCATGACAGTGGCTG 57 NA Rattus norvegicus 81 Muc13 ENSRNOG00000001794 ENSRNOT00000002444 3 1 1 80 11 70195821 70198896 AAGCTATTCCCAACAAGATCG 59 70195761 70195780 CATTGTAAACCATTCCGGCA 59 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 3 1 1 69 10 14620592 14622774 GGCCTATACAATTTACTGCCA 58 14620543 14620562 AAACTTCTTCGCTTGTGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682,ENSRNOT00000084986,ENSRNOT00000050284 2 3 3 80 13 52675819 52676036 ACTTTGATGACATCCACAGGA 60 52676078 52676096 TGTTCTCGAAGTGAGCCTC 60 NA Rattus norvegicus 81 Vapb ENSRNOG00000005331 ENSRNOT00000007554 3 1 1 80 3 171866193 171866211 AAGGTGATGGAAGAGTGCA 59 171866255 171868299 GTCTTCTTCCTTGAGCTGC 59 NA Rattus norvegicus 81 Olr907 ENSRNOG00000048775 ENSRNOT00000042179 2 1 1 60 7 5594554 5594572 CTCACTACTTCCATTGCCC 58 5594595 5594614 CTTGCCTGTTTCTAAGTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb1l ENSRNOG00000001891 ENSRNOT00000002596 2 1 1 80 11 86598279 86598297 GAGTTCCATCTTGGTCAGG 58 86594230 86598235 TCCAGAATCTGAACCTCGT 58 NA Rattus norvegicus 81 Nsd1 ENSRNOG00000016680 ENSRNOT00000060928 1 1 1 80 17 9888373 9893234 CTAGAAAGTGCTGTGAGTCTG 59 9888313 9888333 CACCAAACTCCTTCAAATGAG 58 NA Rattus norvegicus 81 AABR07062154.1 ENSRNOG00000061420 ENSRNOT00000081340 1 1 1 60 4 162830462 162830483 GATGTGATGAATTTGATGGGTC 58 162830423 162830442 CTTGGGTCTTCCTTGTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt10 ENSRNOG00000014296 ENSRNOT00000019406 2 1 1 80 7 130771982 130775416 ATGGATTACGACAGGGTGG 59 130771920 130771939 GTCTCTTCCAAGACCCTCAG 60 NA Rattus norvegicus 81 Btbd6 ENSRNOG00000014693 ENSRNOT00000019768 3 1 1 80 6 137786604 137786726 GCCCACAAGTATGTCTTAGC 59 137786769 137786787 TTCGGACTTGACTTCTGCA 59 NA Rattus norvegicus 81 Foxr2 ENSRNOG00000030619 ENSRNOT00000043382 1 1 1 60 X 19144977 19144995 CTGCCCATTTACTCCACTG 58 19144935 19144954 CGCATTCCTGTTCCTTAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa1a ENSRNOG00000045654 ENSRNOT00000049667 2 1 1 60 20 2701312 2701330 TGCAGGTGAACTACAAGGG 60 2701270 2701288 ACCATGGACGAGATCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbf1 ENSRNOG00000008392 ENSRNOT00000072955 3 1 1 80 7 130281607 130281626 ACATCAACTCTGAGAGGCAC 60 130281369 130281564 CAGTGCACATCACTTCCTG 59 NA Rattus norvegicus 81 Gpx7 ENSRNOG00000009751 ENSRNOT00000013913 2 1 1 93 5 128004816 128004835 CACCTACAGTGTCTCTTTCC 58 128002335 128004760 CCCAGAAGTTTGGGTTAGG 58 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 2 2 2 83 5 129163927 129163946 TGCAAACCAAAGCTTAAAGC 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Pcdhb11 ENSRNOG00000020066 ENSRNOT00000027179 1 1 1 60 18 30497818 30497837 TCGCTCATCTCCATTAACCC 60 30497860 30497878 CATAGTCCAGTGCCCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 2 3 3 80 6 132777441 132777459 TTTCCCGAAGATCTTCCGA 58 132777174 132777398 ATTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 3 3 3 80 6 132777440 132777459 TTTCCCGAAGATCTTCCGAG 60 132777174 132777398 ATTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Coq9 ENSRNOG00000016190 ENSRNOT00000021716 2 1 1 80 19 10585515 10585533 ATACTTGGCGTTTCCTGGA 59 10585130 10585471 CTCCAGTGGACTTCACCTG 60 NA Rattus norvegicus 81 Dhrs7c ENSRNOG00000026548 ENSRNOT00000036752 1 1 1 80 10 54364665 54366349 CACTTTCACCAAAGTTCTGC 58 54366391 54366410 TTTGCTTGGATGTTGTTCAC 58 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139,ENSRNOT00000041961 3 2 2 80 18 17264644 17264662 GTCCTGACTCTGCTGACTC 60 17264703 17282010 TACCACTTACTTGTGGGTACTG 60 NA Rattus norvegicus 81 LOC100363779 ENSRNOG00000048062 ENSRNOT00000067437 1 1 1 106 6 142585051 142585150 AGCTACATGTGTCCACTCC 59 142584963 142584981 TGAAGGTGTAGCCAGAAGC 60 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334,ENSRNOT00000084236 2 2 2 80 12 37027444 37027462 TGGTGAAGTCGAAGAAGCA 59 37027504 37028097 GCTGGCCGATATTGTATTCAG 59 NA Rattus norvegicus 81 Faf1 ENSRNOG00000008523 ENSRNOT00000011765 1 1 1 80 5 129646953 129646974 TTAATGATGAGACTCATGGCTG 58 129647014 129700292 TTCACGTTCATCCTCATCCT 59 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638 2 1 4 84 20 3827670 3827864 CATACTGTTTAACCCAGACGC 59 3827910 3827928 CTCCAGTGAGGCATACACC 60 NA Rattus norvegicus 81 Dusp1 ENSRNOG00000003977 ENSRNOT00000005383 3 1 1 92 10 16972034 16972053 AGTACAAGAGCATCCCTGTG 60 16972102 16972386 CATCCTTGATGGAGTCTATAAAGTC 59 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 3 1 2 75 6 139293172 139293300 AAAGGTGTCCAGTGTGAGG 60 139293339 139293357 AGAGTTTCAGGGACCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc180 ENSRNOG00000010412 ENSRNOT00000013930 1 1 1 80 5 61484143 61484239 AGCTACACTATCGAAACCCT 58 61484280 61484300 CTCCTTAATCTCCTGCTTCTG 58 NA Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000043306,ENSRNOT00000077017 1 2 2 60 10 70424381 70424402 ATTAAGAAGTTCCTGCAACCTG 59 70424342 70424362 CATCATAGTGACCATCTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1414 ENSRNOG00000026714 ENSRNOT00000029524 1 1 1 60 10 43912127 43912145 TGTGAGCCTCTACTATGGG 58 43912085 43912103 AGTGTGGAAAGAGTCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf16 ENSRNOG00000061530 ENSRNOT00000090665 1 1 1 80 X 76786936 76786956 GCTTCCACCTTGAAATCTTCC 60 76786995 76794615 TAAATTCCAGAATTCCGAAGCG 60 NA Rattus norvegicus 81 Nmbr ENSRNOG00000012103 ENSRNOT00000016215 3 1 1 80 1 8941226 8941249 GGAATAGCAATCGGTAGCTC 58 8941293 8941314 GATCTTTGGAGTACTCCATCTG 58 NA Rattus norvegicus 81 Tceanc ENSRNOG00000004531 ENSRNOT00000005981 2 1 1 60 X 29504818 29504837 AAGGCTATTTGGAGGATGAC 57 29504858 29504878 GGATTATCTAGCACACCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh9 ENSRNOG00000038068 ENSRNOT00000057924 2 1 1 60 15 77733943 77733967 GGAACAGAGTATAGGAAGATTTGAC 59 77733907 77733927 GTTAGGCTTGAAGGTTGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg7 ENSRNOG00000007486 ENSRNOT00000067532 1 1 1 80 4 146627290 146630787 AATATTTCCCGGAGTGAATGC 59 146630828 146630847 GTGACGTCAGAGAAGTTCAC 59 NA Rattus norvegicus 81 LOC100912159 ENSRNOG00000048615 ENSRNOT00000071005 3 1 1 60 10 12213949 12213967 AACCCTTTCATCTACAGCC 57 12213907 12213927 TGAGCACTTTCTTTAGAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 2 2 2 80 10 104539215 104539922 GAGCTTAAGAAAGCGGAAGAG 59 104539964 104539982 CACGGTGTAGCTGTAAGTG 58 NA Rattus norvegicus 81 Foxc1 ENSRNOG00000017800 ENSRNOT00000023957 1 1 1 60 17 33950650 33950670 CTTATCACCATGGCTATCCAG 58 33950610 33950628 GGTAGATGCCATTCAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas1r3 ENSRNOG00000019589 ENSRNOT00000026671 3 1 1 80 5 173311710 173311843 CTATGTACCAGGTTCTCGC 57 173311648 173311668 AGATCCATTGTTGATCTCCTC 57 NA Rattus norvegicus 81 Btf3l4 ENSRNOG00000008512 ENSRNOT00000011272 2 1 1 80 5 128434922 128434943 GAATACTAAGTCAGCTTGGTGC 60 128433866 128434883 TATCCAATACTTGTCGTGGGA 59 NA Rattus norvegicus 81 Smim22 ENSRNOG00000042344 ENSRNOT00000066754 2 1 1 113 10 10767363 10767381 AGGAAGCAGTGTGAGTTCC 60 10766969 10767286 CCATCTCAGCTACCTCCTC 59 NA InUTR Rattus norvegicus 81 Olr1174 ENSRNOG00000049712 ENSRNOT00000049066 3 1 1 60 8 20536129 20536149 TACTCACAGATTGTCTCATCC 57 20536169 20536189 AGGCTTTGTACTTACTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834,ENSRNOT00000047602 3 2 2 60 1 264094103 264094599 GATTTCCAGCAAGTGTGGC 60 264094623 264094641 ATCCTGATGTCTCCAGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1569 ENSRNOG00000050293 ENSRNOT00000057990 3 1 1 60 11 85313487 85313507 CCATTTCTTCTGTGATGTTCC 57 85313447 85313468 ATAAACCCAAGTGTCCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amn ENSRNOG00000009050 ENSRNOT00000012469 1 1 1 157 6 135725333 135729621 ATCTCGGATATGCTCCTGC 59 135729857 135729875 CATAGGTGAGGGTCAAGCC 60 NA Rattus norvegicus 81 LOC100910275 ENSRNOG00000049965 ENSRNOT00000043210 3 1 1 81 6 138367159 138367511 GAAGTGGCATTCAAAGGCTC 60 138367097 138367117 CGTTGTCATTCTCAGACATGG 59 NA Rattus norvegicus 81 AABR07029056.1 ENSRNOG00000048608 ENSRNOT00000074890 3 1 1 80 10 4451057 4451077 TATTGCTGATGAACGAATCCG 59 4451115 4451220 GATACTGGAACTTTCTTCCTCTG 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000089984,ENSRNOT00000081017 1 2 6 109 1 41590564 41590585 CCTTACAAACCTACTACATCCC 58 41591588 41591606 CATGTATTTGCTCCCTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 2 3 3 80 5 122126897 122128458 TCATCTAGCCAAGGAGCTG 59 122128502 122128520 GGCCGATTATGGGAGTACC 60 NA Rattus norvegicus 81 AABR07065656.3 ENSRNOG00000049243 ENSRNOT00000075363 1 1 1 82 6 138900655 138900678 CTATACCTGCAAATGGATAGTCTG 59 138900553 138900616 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 AABR07065656.3 ENSRNOG00000049243 ENSRNOT00000075363 3 1 1 85 6 138900663 138900682 CACCCTATACCTGCAAATGG 58 138900554 138900616 GCTGGTCACTAGTATCTGTG 58 NA Rattus norvegicus 81 Atf4 ENSRNOG00000017801 ENSRNOT00000065304 2 1 1 68 7 121481721 121481739 ATGGATGGGTTGGTCAGTG 60 121481881 121481899 CAACATCCAATCTGTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Akt1 ENSRNOG00000028629 ENSRNOT00000031164 1 1 1 80 6 137223641 137223659 TCACCCAGTGACAACTCAG 59 137223174 137223598 AAACTCGTTCATGGTCACAC 59 NA Rattus norvegicus 81 LOC102551168 ENSRNOG00000040054 ENSRNOT00000061595 2 1 1 60 11 29062477 29062495 GCTATGGCTGTGGTTATGG 58 29062518 29062537 CAGCCATAACCATAGCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacs2 ENSRNOG00000014744 ENSRNOT00000056880 2 1 1 80 6 137877032 137877050 TCCTCATCTCCGATGACCA 60 137877093 137877277 CATCTGAGAGGAACTGTCCC 60 NA Rattus norvegicus 81 Olr820 ENSRNOG00000046810 ENSRNOT00000047359 1 1 1 60 4 72656461 72656479 CTCCTTGTCGTGATGTCCT 59 72656502 72656521 CAGTGTAGTGTAGTGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 1 2 2 80 16 47891486 47893208 CTCTGTAACCATGACGCTG 58 47893250 47893270 TCCATAGAAGTCAAGAACACC 58 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 2 2 2 80 10 55925364 55925384 AGTACAAGCTGATGTATGGGA 59 55925425 55925784 AGCCATCCTTCATGTCTAGC 60 NA Rattus norvegicus 81 Psmc2 ENSRNOG00000012026 ENSRNOT00000016450 3 1 1 80 4 9876545 9877244 GCTCACTGGTATCAAAGAGTC 59 9876485 9876504 TGAAGTGTCTGTTTGTCTGC 59 NA Rattus norvegicus 81 RGD1306484 ENSRNOG00000005821 ENSRNOT00000007630 3 1 1 60 10 37582762 37582782 AAGAAATGCTTCCTCAACTCC 59 37582802 37582822 TCCACTGATCATCTTCAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893,ENSRNOT00000074197 3 2 2 80 6 146861664 146861687 TAATCCTAGATGAGGCTACATCTG 59 146857482 146861625 CTTTGCTTGCCTTCTCCAG 59 NA Rattus norvegicus 81 Cct2 ENSRNOG00000021317 ENSRNOT00000037946 1 1 1 80 7 60113341 60113359 AATGCTTGCCAGTAGAACC 58 60112804 60113298 ATCGTTGGCAACATTCTCAG 59 NA Rattus norvegicus 81 Pax2 ENSRNOG00000014253 ENSRNOT00000050076 3 1 2 80 1 264537938 264537956 ATCCTACTCCATCAACGGG 59 264537997 264543491 GTGTATACCTCGACTTCCTCTC 60 NA Rattus norvegicus 81 Olr1492 ENSRNOG00000054729 ENSRNOT00000082795 2 1 1 60 10 60427933 60427953 CTGTGAAGGAGATTGTCATGG 59 60427893 60427911 AAGGGATTCAGCATGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsj ENSRNOG00000046476 ENSRNOT00000038758 1 1 1 80 17 4108375 4109365 CAGTGGAGGTGTTTATCATGAG 59 4109405 4109424 TCAAATCCATAGCCAACCAC 58 NA Rattus norvegicus 81 Pex6 ENSRNOG00000016655 ENSRNOT00000022582 2 1 1 80 9 16569587 16569605 AAGCTGGTGTTTGTAGGAG 57 16569390 16569543 CAGCTTGAACTTTCGTGTG 58 NA Rattus norvegicus 81 Mir29b1 ENSRNOG00000035463 ENSRNOT00000053586 1 1 1 60 4 58344364 58344382 AGCTGGTTTCATATGGTGG 58 58344322 58344343 CTGATTTCAAATGGTGCTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr894 ENSRNOG00000061448 ENSRNOT00000090661 3 1 1 60 7 5168211 5168232 GAATTCCATCTACTAGCCAGAG 58 5168172 5168192 ACAATCATGTGAGAGGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr931 ENSRNOG00000047264 ENSRNOT00000044977 3 1 1 60 7 16405306 16405325 GTCCTACAACTGTCTTGCTC 58 16405345 16405366 GAGCTAAGATGAAAGCAGTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir327 ENSRNOG00000059368 ENSRNOT00000084355 2 1 1 60 20 14110694 14110712 GAGGGTAGTCAGTAGCCTG 59 14110652 14110671 CAAGCCATTCCAACATGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584,ENSRNOT00000078650 2 2 2 80 2 124161735 124162574 AAGAGTTACGGAATTCCAGC 58 124162617 124162635 AGCCCTAGCAATCATTGTC 58 NA Rattus norvegicus 81 Cys1 ENSRNOG00000058891 ENSRNOT00000089859 2 1 1 103 6 43846686 43846705 ATTACTCGGAAGAGGAGCTC 59 43846602 43846620 CTCACAGACCTACAAGGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Fam46c ENSRNOG00000015222 ENSRNOT00000020401 2 1 1 83 2 202816335 202816354 AGTCACCTCTTCTTCCAACG 60 202799929 202799947 GGAGTCCTTGGTACTGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC687631 ENSRNOG00000047532 ENSRNOT00000071454 3 1 1 111 20 11597188 11597206 CCAGCAGTCTAGCTGTGAG 60 11597281 11597299 GGATTCAGAGCAGATGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs1 ENSRNOG00000046794 ENSRNOT00000075270 3 1 1 81 5 147928451 147931706 AAGCCTATGGACAAGATGAC 57 147928389 147928407 CTGTATGCTCCCTTCACTG 58 NA Rattus norvegicus 81 Map6d1 ENSRNOG00000001911 ENSRNOT00000058043 2 1 1 88 11 84321456 84325777 CGTCTTATAGACAGGAATTCCA 58 84325826 84325844 GTGAGTCGTGACAACTCTG 58 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000083701,ENSRNOT00000084322 1 4 5 80 14 71627888 71629390 TGCTGACCCTCTGAATCTG 59 71629432 71629452 TTGATAGCGATGATTACAGCC 58 NA Rattus norvegicus 81 Amd1 ENSRNOG00000000585 ENSRNOT00000000715 2 1 1 80 20 45386923 45386941 GGTTCTGTCATTGATGCCA 58 45386761 45386881 AGTCCAATATGTTCCATCCGA 59 NA Rattus norvegicus 81 LOC100911489 ENSRNOG00000048233 ENSRNOT00000070803 3 1 1 84 9 16139144 16139861 CAAGTGACTTCGGAGAGGA 59 16139906 16139927 TTGTCCCAAATATCTTCCACTG 59 NA Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 1 2 2 80 7 12772112 12772130 TACCACTACCGCTTTAACG 57 12771958 12772069 GTAGATCATGGAATGCTGGA 57 NA Rattus norvegicus 81 Ctbs ENSRNOG00000015573 ENSRNOT00000020972 1 1 1 80 2 252314666 252314685 GAGCAAAGTCAGATCTGGTC 58 252314722 252315803 GTAGTCACCATATCCAGTTAATGTC 59 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 1 2 2 80 10 104621348 104621366 TGGTACAGGACGTTATGGG 59 104621205 104621307 GGTCTATCTTGAGGACATTGTG 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 2 2 2 80 17 9692778 9692797 AATTCGCCCAATCAGAAGAG 58 9692839 9693027 AGGTGATGTCGATTTCTGGA 59 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 1 2 2 96 9 16610695 16611161 CATGGACCCAGAACATGTG 59 16610617 16610635 ATCTGATATCTCCCGAGCC 58 NA Rattus norvegicus 81 Ogfod1 ENSRNOG00000019288 ENSRNOT00000026118 2 1 1 80 19 11449295 11449316 CTTCAGAAAGAACTCTTGAGCC 59 11442774 11449256 CTTCAAATCATCGGACTGCTG 60 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 3 2 2 80 7 126759574 126759594 TCTTAGACATCCCTTTCCACC 59 126759632 126761575 CATACTCGTTCAGAAAGTCACTG 60 NA Rattus norvegicus 81 Cpsf6 ENSRNOG00000005927 ENSRNOT00000008193 1 1 1 80 7 60401823 60401844 TGAATAGAAATCGGGCAATCTC 59 60400667 60401784 TAGCACTCCCATAATCACCAG 59 NA Rattus norvegicus 81 LOC500077 ENSRNOG00000026958 ENSRNOT00000029818 3 1 1 128 4 62394796 62395736 CTGAACAGGCATTCAAGATCG 60 62394688 62394709 TTAGGGTTTCCATTGCTATGGT 60 NA InUTR Rattus norvegicus 81 RGD1564942 ENSRNOG00000029141 ENSRNOT00000047522 3 1 1 80 5 133413341 133420452 GAGGACAGCACTACTATCTCG 60 133420494 133420512 CTTGACAAAGGGCTTGGTG 59 NA Rattus norvegicus 81 Bmpr1b ENSRNOG00000016289 ENSRNOT00000021963 1 1 1 80 2 247406304 247411441 TGTGTTTCTGGAGGTATAGTG 57 247406244 247406264 CATGTCCTCATAAGAAGGGTC 58 NA Rattus norvegicus 81 LOC100360120 ENSRNOG00000047309 ENSRNOT00000075273 2 1 1 136 4 167219794 167219812 TACGGTGTCTTCTGCAAGG 60 167219910 167222000 CTTATGAATCTCTGCAAGCGG 60 NA Rattus norvegicus 81 Rab44 ENSRNOG00000001869 ENSRNOT00000002553 1 1 1 80 20 6409156 6409174 GGATTTCCTTCGGTGAGTG 58 6409218 6410111 TCTTAAGTGACCGAGCCAG 59 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 3 2 2 80 19 61441962 61449955 GCTGCAAGATAACAGATTACCC 60 61449994 61450014 ATGCTGTAATCTGGGAGTCTG 60 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 1 2 2 80 5 4425410 4425429 CCAATGCCACTTACCAACTC 59 4425472 4447455 TACTGTACTCTGCTGTGGG 58 NA Rattus norvegicus 81 AABR07034729.1 ENSRNOG00000042193 ENSRNOT00000046465 3 1 1 81 11 85263562 85430541 CTTAATTTGTGCTACAGCAGG 58 85430584 85430602 TGTTCCACCAGGTAATGTG 57 NA Rattus norvegicus 81 LOC100912538 ENSRNOG00000050877 ENSRNOT00000074157 1 1 1 80 2 9683775 9685323 TTAGCTCTGAGAGGTGAGC 59 9685364 9685385 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 3 2 2 80 9 16869175 16869193 TCCGAGTTCCATCTCTTCC 59 16869237 16871956 CACCGACATGATCAACTGG 59 NA Rattus norvegicus 81 Sh2d6 ENSRNOG00000013605 ENSRNOT00000018251 3 1 1 80 4 100377670 100378365 CGTCTTATTCTCAAGAAACCAG 57 100377275 100377293 CAGAGACCTAGTCAAGGCT 58 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 1 2 2 106 19 10130852 10130870 TACTGCCTCAACCAGAACC 59 10129859 10130576 TTGATGCGACTGTAGTGGG 60 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 1 2 2 80 2 203832410 203832429 ACAACAATACCTGGACGAGG 60 203832472 203844309 GAAGCTTTGTCACTGGCTG 60 NA Rattus norvegicus 81 Nup205 ENSRNOG00000010852 ENSRNOT00000014832 1 1 1 80 4 62715913 62715932 CTCTCCTCATGGCTCTTCTG 60 62715971 62717593 GGTGAATCATATCATCTCGTTCC 59 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894,ENSRNOT00000091565 1 2 2 60 9 16538286 16538304 AGCTTCCACAGACAGAACC 60 16538892 16538910 CAGTACCTGACGTTGTGTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC103689982 ENSRNOG00000052600 ENSRNOT00000090873 1 1 1 80 1 64041347 64045107 CCTACGTATTGAGGAGTGC 57 64045150 64045169 TGAAGCTTAGGTAGTAGCCA 58 NA Rattus norvegicus 81 AABR07031533.1 ENSRNOG00000049802 ENSRNOT00000072093 2 1 1 60 18 18079450 18079469 GGCATATGAACGGATTAAGC 57 18079409 18079428 TGGTCCTTCATAGGAATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hes2 ENSRNOG00000010490 ENSRNOT00000014035 2 1 1 81 5 169338709 169338727 ATCCTGGAAATGACTGTGC 58 169338772 169338870 AGCTATCCAAAGACCCAGG 59 NA Rattus norvegicus 81 Tmed11 ENSRNOG00000000035 ENSRNOT00000000040 2 1 1 83 14 1955553 1955572 TGGTGAACACATCATTTGCT 58 1955617 1956478 ATATCTAAGTGGATGCGCAG 58 NA Rattus norvegicus 81 Slc35f3 ENSRNOG00000049456 ENSRNOT00000071655 2 1 1 80 19 59186929 59186948 TCTTCCCATTGTACTACGCA 59 59186990 59254044 GACAGCATTCCCTGTATCTC 58 NA Rattus norvegicus 81 Rn60_X_0721.2 ENSRNOG00000051161 ENSRNOT00000076649 1 1 1 60 X 71141501 71141522 TAAATGGACAAGTGTTGGACAG 59 71141540 71141561 TCTGTTATAAGGGACAATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam53c ENSRNOG00000020261 ENSRNOT00000027499 1 1 1 80 18 27562825 27567168 TCCAGCTTGTGTCTGAAGG 60 27567212 27567230 TGAAGTTGAGGCTGTCCTG 60 NA Rattus norvegicus 81 Ebf4 ENSRNOG00000007408 ENSRNOT00000028816 2 1 1 80 3 122881154 122881174 TAGTAGAAGTGACCCTCTCCT 59 122881216 122882621 CATTCAGGGCTGTGTAGAC 58 NA Rattus norvegicus 81 AABR07002659.1 ENSRNOG00000034000 ENSRNOT00000024155 2 1 1 80 1 79290653 79291981 CATGTGTACAGTAACATTGAGGAC 60 79292114 79292134 CAAAGCTAATGAGCATCCTCC 59 NA Rattus norvegicus 81 Atrnl1 ENSRNOG00000017406 ENSRNOT00000023414 3 1 1 80 1 278656466 278661827 TATCCAGTGTCCAGCTTGC 60 278661868 278661889 GTGAGATTCTTACACTGCTCAC 59 NA Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261,ENSRNOT00000085235 3 2 2 80 5 135154417 135154435 AGGAGGAAGTGAGTGAGGA 59 135154045 135154375 TACTGTAAACCTTGCTGAACC 58 NA Rattus norvegicus 81 Klc1 ENSRNOG00000011572 ENSRNOT00000065281,ENSRNOT00000015935 3 2 2 80 6 136351791 136351809 CCTGGAGATCTACCAGACG 59 136351853 136351955 AGATAACAGGAAGCCAGGT 58 NA Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000019473 1 1 2 155 17 13802803 13812448 AGAACGAGAGCCTGTTTCC 60 13802666 13802687 ATGACTTCCTATAGACGGATGG 59 NA InUTR Rattus norvegicus 81 Lrrc10 ENSRNOG00000049607 ENSRNOT00000073117 3 1 1 60 7 60087481 60087500 AGAGTTATGTGGTGGGAGAC 59 60087523 60087541 CCACTCAGATCCACCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040,ENSRNOT00000017195 1 2 2 80 13 56873760 56873778 AATCAGAGCACCATCACCT 59 56865735 56873717 ACATTTCCCTGCTGAATTGG 59 NA Rattus norvegicus 81 Wdr78 ENSRNOG00000006999 ENSRNOT00000046691 2 1 1 80 5 122593600 122605832 AATACAAGACAGCGAAAGCA 58 122593539 122593558 TTGTCTTCTTCATCCTCGTG 58 NA Rattus norvegicus 81 Wdr78 ENSRNOG00000006999 ENSRNOT00000046691 3 1 1 80 5 122621314 122626895 GCCAAATTGGTACAGGTGC 60 122621252 122621270 CATGGCATGTGGATCTGGA 60 NA Rattus norvegicus 81 C3ar1 ENSRNOG00000009211 ENSRNOT00000012216 1 1 1 80 4 155685930 155690766 CTCAGTGCTCTTGACTGAG 58 155685868 155685886 TTTAAACAGAGGCCGTGAG 58 NA InUTR Rattus norvegicus 81 Bloc1s5 ENSRNOG00000016497 ENSRNOT00000022108 1 1 1 80 17 26808503 26812362 ACCTCATTATCAAGGATCTTGG 58 26812402 26812421 AGTAACGGATTTCACCTTGG 58 NA Rattus norvegicus 81 Mrpl2 ENSRNOG00000018057 ENSRNOT00000024380 1 1 1 96 9 16645049 16645160 TCCTTGTAGGTCTGCAGAC 59 16644971 16644990 CAGGATTGTATCTCCTGCCT 59 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000078548,ENSRNOT00000008312 2 2 2 82 6 56011015 56011486 GTGTGAATGTTGTGTCCTCTG 60 56011529 56011548 ATACAGAAGAGGAAGGCTGC 60 NA Rattus norvegicus 81 Rn60_10_0700.4 ENSRNOG00000051029 ENSRNOT00000076584 2 1 1 60 10 70331057 70331077 TCTGAATAGGTTTGACACGGA 59 70331098 70331117 TAATCTCCATTCCAGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg9a ENSRNOG00000018975 ENSRNOT00000025740 3 1 1 80 9 82389617 82391041 TTTGAACTCATGCAGTTCCTC 59 82389557 82389578 GGCAAATAGGATGTCATAGTCC 59 NA Rattus norvegicus 81 Cecr6 ENSRNOG00000046851 ENSRNOT00000074558 1 1 1 60 4 153027163 153027182 CTACTCCATCGCTTTCACTC 58 153027122 153027140 GAGGTCCAGGATGGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 1 2 2 80 2 12102692 12104240 TTAGCTCTGAGAGGTGAGC 59 12104281 12104302 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 LOC499715 ENSRNOG00000033088 ENSRNOT00000043369 3 1 1 80 2 242824502 242825597 TCACAATGTCAAGCTATGCTC 59 242824442 242824463 CTGTTCTTTAAGGTGAGATCCG 59 NA Rattus norvegicus 81 Lias ENSRNOG00000002759 ENSRNOT00000003779 3 1 1 81 14 44523576 44523595 GGTGATCTTGCAGACAAGAG 59 44522071 44523535 GAGGTAGTCTTAACCTTTCTCC 58 NA Rattus norvegicus 81 Nop16 ENSRNOG00000017284 ENSRNOT00000023320 2 1 1 80 17 10561716 10563586 ATGTGGTTAATGACCTGGAG 57 10563629 10563647 CATAATCGATGAGGTCCCG 58 NA Rattus norvegicus 81 Tmem240 ENSRNOG00000042211 ENSRNOT00000068062 1 1 1 63 5 173184009 173184030 CCATGATCTTCATGATTCTGGG 59 173184325 173184343 TTCATGTCCATCAAGCACG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem240 ENSRNOG00000042211 ENSRNOT00000068062 3 1 1 65 5 173184007 173184028 CACCATGATCTTCATGATTCTG 57 173184325 173184343 TTCATGTCCATCAAGCACG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07065699.5 ENSRNOG00000058753 ENSRNOT00000075467 2 1 1 134 6 139523663 139523681 CTCAAATCCCGACTGAGCA 60 139523779 139524168 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Col6a6 ENSRNOG00000023007 ENSRNOT00000056414 2 1 1 80 8 114363079 114363099 ATTCATAAACCTGACCACGGA 60 114360108 114363040 ATACTTGTTTATCCCATGCCTG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746,ENSRNOT00000079201 3 2 2 80 12 39374346 39375608 ACCCACAAAGTAAAGGAATCC 58 39374286 39374305 ACCAGGCAAAGATTTCACAG 59 NA Rattus norvegicus 81 Atp10a ENSRNOG00000056228 ENSRNOT00000080907 3 1 1 80 1 116139638 116139748 TTCATTCCCTATCTGGCCT 58 116139790 116139810 GAACAATGCTATTGCTGTGAC 58 NA Rattus norvegicus 81 Rab3il1 ENSRNOG00000020349 ENSRNOT00000027611 1 1 1 83 1 226080800 226082723 ACAACACCAACACATGTGC 60 226082770 226082788 AATAGTGGCCGTCAGAGTC 59 NA Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 1 2 2 81 6 136394368 136394467 CAACCAGAGATGCTTGATTCTG 60 136394506 136394527 TGTGAGAATCTGGACAGTACAC 60 NA Rattus norvegicus 81 Mt2A ENSRNOG00000043098 ENSRNOT00000067391 1 1 1 97 19 11308711 11308732 CCTAGAACTCTACAGCGATCTC 60 11308372 11308653 CAGGAGCAGGATCCATCTG 60 NA InUTR Rattus norvegicus 81 Agbl2 ENSRNOG00000008467 ENSRNOT00000011467 2 1 1 80 3 79620117 79620186 CCTAGCTACCATTGGTCGT 59 79623068 79623086 CTGCTCCTAAGGAGTGGTG 60 NA Rattus norvegicus 81 Olr192 ENSRNOG00000017366 ENSRNOT00000023325 1 1 1 80 1 170005128 170005146 TTATAAGCCGGAATGCCCT 59 169991103 170005085 TGATAATTCCATGGACGCAG 58 NA Rattus norvegicus 81 Cd79al ENSRNOG00000049925 ENSRNOT00000071609 2 1 1 88 9 16795858 16795876 TCTAGGAGTCCTCCGAACC 60 16794200 16794219 TTTCTAACATCAGGGCCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Omd ENSRNOG00000046658 ENSRNOT00000074323 1 1 1 67 17 14636908 14636932 CCAAGGAATTTGGAACATCTATACC 60 14636122 14636143 CACATCATTGTCACATTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc105 ENSRNOG00000007375 ENSRNOT00000009833 2 1 1 80 7 13918353 13918372 CCTTGGTTCGCATGTATCAG 59 13918415 13919056 TTAGCAGGTCAGTACCCTG 58 NA Rattus norvegicus 81 Senp3 ENSRNOG00000013746 ENSRNOT00000018670 1 1 1 80 10 56283024 56283043 TCCTATAAACGACACGTGCT 59 56282849 56282983 GTTCATCACCTGGTCATTGAG 59 NA Rattus norvegicus 81 Lpin3 ENSRNOG00000016636 ENSRNOT00000022403 3 1 1 80 3 156893310 156893329 CGAGGACCTCACTAAGAACC 60 156893370 156893486 GCCCAGTTATAATGCTTCTCG 59 NA Rattus norvegicus 81 Ndufs7 ENSRNOG00000024568 ENSRNOT00000039728 2 1 1 99 7 12318929 12319572 ACATCTATGTGCCAGGCTG 60 12318848 12318868 CAGATCTTCAGCTTCTGTTCG 59 NA Rattus norvegicus 81 Klhl3 ENSRNOG00000019533 ENSRNOT00000034877 2 1 1 80 17 6993051 6993069 CTTAAGTCTGGACCAGGTG 57 6993112 7014402 ACGGCTTCAAATACCTTCTC 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 3 3 3 80 19 10432512 10434234 TCTTCTCCTTCCATAATGCC 57 10432451 10432469 ACTGCAGTTCCTTCTTGAG 57 NA Rattus norvegicus 81 Spata6 ENSRNOG00000007568 ENSRNOT00000010524 1 1 1 80 5 131787679 131787698 CTGTGATGAGATCCATGACC 58 131787738 131800274 TCTCGCTCTTCACATAAATGTC 59 NA Rattus norvegicus 81 Tmem138 ENSRNOG00000020693 ENSRNOT00000028092 1 1 1 80 1 226628531 226628551 TATGACCTGTTCGTCAATTCC 58 226628240 226628489 ATCCTGGATGATGAACAGC 57 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 3 1 1 96 X 15425397 15425821 TGCTGAGGTACTTGCTAGG 59 15425319 15425337 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Ccnf ENSRNOG00000007483 ENSRNOT00000064392 1 1 1 80 10 13613011 13614159 TAAAGCTGTTTGAAAGGGCTG 60 13612951 13612971 CTTCATTGTAGAGGTAGGCGA 59 NA Rattus norvegicus 81 Glrx2 ENSRNOG00000003385 ENSRNOT00000060062 2 1 1 80 13 60536565 60536584 GTGGAGTTGGATATGGTGGA 59 60536626 60537790 CCTGGGAACAGTTCTTTCTC 58 NA Rattus norvegicus 81 Glrx2 ENSRNOG00000003385 ENSRNOT00000060062 3 1 1 80 13 60536624 60537787 TGGAGAAAGAACTGTTCCC 57 60537831 60537849 TCTTTGTGAAGCCTGTGAG 58 NA Rattus norvegicus 81 Tgfbr2 ENSRNOG00000013265 ENSRNOT00000037883 2 1 1 80 8 124327925 124327943 GGATGTCTACTCCATGGCT 59 124315569 124327885 GGCTCATAATCTTTCACTTCTCC 59 NA Rattus norvegicus 81 Slc25a48 ENSRNOG00000012040 ENSRNOT00000016138 3 1 1 83 17 8596527 8603489 TCTGGACACAGTCAAGACTC 59 8596463 8596481 TCCCTCTTGTACACCATGC 59 NA Rattus norvegicus 81 Ascl2 ENSRNOG00000020434 ENSRNOT00000027688 1 1 1 203 1 216155859 216156147 GGAATCGCACTTTAACTGGT 59 216155675 216155693 ATCAAGCTTGCATTCAGCG 60 NA DesignRelaxed Rattus norvegicus 81 Hhip ENSRNOG00000018268 ENSRNOT00000024616 1 1 1 80 19 31593127 31593145 TTGCTCAGATTCCAATGGG 58 31593189 31595388 TGCTCGCTTTCGTAATCTC 58 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 3 2 2 92 9 82597736 82597756 TCATGGACCAATCAGTGAGAG 60 82597810 82598553 GATTCCTCAGCCAGGAGAC 60 NA Rattus norvegicus 81 LOC302999 ENSRNOG00000020212 ENSRNOT00000027371 3 1 1 71 10 15310052 15310070 AAACTTGGCTGTCAGAGCA 60 15309721 15309740 AACTGGTTCCTTGTCCTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Isca1 ENSRNOG00000018343 ENSRNOT00000024781 3 1 1 80 17 5290837 5292837 GAAGTTATTCAAGACGGAGTCC 59 5292877 5292896 CACATAGTCCATCTCTGTGC 58 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 3 2 2 80 5 165354472 165354491 CAGATGTCAATGAAGCCCTG 59 165354531 165354874 CAATGAGCTGAGGTATAACCTG 59 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000042314 2 1 2 80 8 22161448 22163068 GATGGATCCTACTGATGCCA 59 22161387 22161405 TCACCAGACTTGGAGTTGG 59 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949,ENSRNOT00000042314 3 2 2 80 8 22165142 22165848 CTTCAGCAAGAGCATGGTC 59 22165080 22165098 GTCTTGTGTTTCTGCTCCC 59 NA Rattus norvegicus 81 Prr21 ENSRNOG00000042164 ENSRNOT00000063869 2 1 1 93 4 166040597 166042629 CTCACATGAAGACCATGGC 59 166042685 166042704 TATGTCTGGATGAGGAGGAC 58 NA Rattus norvegicus 81 Ctdsp2 ENSRNOG00000047598 ENSRNOT00000075371 3 1 1 81 7 70287649 70287667 TTGATGAGTTCCTGAGGCG 60 70287712 70287827 ACAGGGTCAGCATACTTGG 59 NA Rattus norvegicus 81 Tmem208 ENSRNOG00000015974 ENSRNOT00000021723 2 1 1 81 19 37284076 37284256 ATGGCAGAGCACCTTAAGG 60 37284300 37284319 AGGACCAGATGTAGAGGGAG 60 NA Rattus norvegicus 81 AABR07062211.1 ENSRNOG00000061664 ENSRNOT00000087219 2 1 1 80 4 165117995 165118013 CAGGGTTACAGAACCAGGT 59 165115444 165117955 GTGGTAGATTAGAGTTTCCTCTG 58 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 1 4 4 80 18 56312633 56312651 CTCTGTCACCCTTCTGGTC 59 56312500 56312590 TTTCCAGAAAGGCAAACTGG 59 NA Rattus norvegicus 81 Cdkn1b ENSRNOG00000007249 ENSRNOT00000049848 2 1 1 98 4 168689960 168689978 ATTTGGTGGACCAAATGCC 59 168690040 168690588 AAGAAGAATCTTCTGCCGC 58 NA Rattus norvegicus 81 Myo1d ENSRNOG00000003276 ENSRNOT00000004609 2 1 1 80 10 67869189 67936685 ATCATTTCAAGAGTGAGAAGCG 59 67869130 67869148 TGCATTTCTTCCCATGCAG 59 NA Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000034477 3 1 2 87 1 222620662 222620747 GTAGTAAGGAGTCAGGCCAG 59 222620594 222620612 AAGAGGACCACGATCTCTG 59 NA Rattus norvegicus 81 Hrh2 ENSRNOG00000018260 ENSRNOT00000024580 3 1 1 94 17 10930496 10952394 AGCACCAGCTTCTATGACC 60 10930420 10930438 CATGTCCTTCTCCATGGCT 60 NA InUTR Rattus norvegicus 81 Slc22a7 ENSRNOG00000018420 ENSRNOT00000025094 3 1 1 80 9 16929230 16929251 CTCATACTTAGACCTGTTCCGA 59 16929291 16929737 AAGTTCACTCCAAACCACAC 59 NA Rattus norvegicus 81 Phf20l1 ENSRNOG00000046527 ENSRNOT00000007564 2 1 1 80 7 108749176 108749197 CACATGTATAGTCACAGCAGAG 59 108749235 108749785 TCTATGTGAAGTCCTACAAACG 58 NA Rattus norvegicus 81 Ly6g6e ENSRNOG00000027157 ENSRNOT00000037482 2 1 1 119 20 5068171 5068189 GGAGTGTCGGGAAGATGAG 60 5068368 5068386 GTAGTATGGCCCAGCAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Pura ENSRNOG00000019062 ENSRNOT00000025756 3 1 1 60 18 29110446 29110465 AACAAGCGTTTCTACCTGGA 60 29110488 29110506 CAGCGATCTTCAGGAAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 3 2 2 80 2 93538141 93539246 CTTGGATGAAGAATCTAGAGCTG 59 93539283 93539304 ACTTCTATGTCTGCTATTGCAC 59 NA Rattus norvegicus 81 Ccdc163 ENSRNOG00000022953 ENSRNOT00000056967 1 1 1 80 5 135564260 135564281 AAACCCAAATGAGAACAAGACC 60 135564322 135565029 AAAGTTGGTGCTCGTTCTG 59 NA Rattus norvegicus 81 Olr1545 ENSRNOG00000055575 ENSRNOT00000081261 1 1 1 60 11 43432187 43432208 CTTCTATTCATGTATGTGCGTC 58 43432226 43432247 AGTCCATCATATCCTGATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr7 ENSRNOG00000018387 ENSRNOT00000025325 3 1 1 80 18 59337161 59337683 CTTCTTGTGGAGGTCATGG 58 59337727 59337745 GAAACACTCCTGAAGACCC 58 NA Rattus norvegicus 81 Ipcef1 ENSRNOG00000018163 ENSRNOT00000024460 1 1 1 80 1 43617385 43637235 TGGCAATCAATTGGCAGAG 59 43617323 43617341 TTCTTGCATTCAGAGGCTC 58 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 3 2 2 80 9 17821054 17821075 ATCAAATTGTATGTCCGTCGTG 60 17821116 17821273 ACCACGGATGAAGTTGAGG 60 NA Rattus norvegicus 81 Sebox ENSRNOG00000009979 ENSRNOT00000013296 1 1 1 105 10 65772770 65772946 AAGATCCAGGTGTGGTTCC 59 65773014 65773033 CTGGAAGAGAACAGTTTGGG 59 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 1 2 2 80 17 9625117 9626019 ACTTCAAGAGGTTCTGTTTGG 59 9626061 9626079 TCTTGAGGCTGAAGTTGGT 59 NA Rattus norvegicus 81 LOC100911093 ENSRNOG00000006432 ENSRNOT00000008526 3 1 1 80 4 138865662 138865822 GTTATAGATTCTAGGGAACCGG 58 138865862 138865881 CTTGAGAAGAGCATGCTCTC 59 NA Rattus norvegicus 81 Bnip1 ENSRNOG00000020753 ENSRNOT00000028173 1 1 1 80 10 16689270 16689288 ACGTCCGAATCTGTAACCA 59 16686139 16689229 CGGAACAATCTCGAATATCCTG 59 NA Rattus norvegicus 81 Ccdc177 ENSRNOG00000033973 ENSRNOT00000040965 2 1 1 185 6 104408326 104408344 CAGGTAGGAAGAGCCACTC 59 104408159 104408178 CTAGTGGGTTAGGTGCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lap3 ENSRNOG00000003289 ENSRNOT00000004770 2 1 1 81 14 70106283 70108338 TTTAACAGGTGCCATGGAC 58 70106220 70106238 TAGTTTGTTCCACAGCCAG 58 NA Rattus norvegicus 81 LOC690422 ENSRNOG00000005153 ENSRNOT00000029223 1 1 1 80 6 137970634 137971020 GTACCCTCCTCAGTAAGATCC 59 137971061 137971080 TTTCAGCGACAGAAAGATGG 59 NA Rattus norvegicus 81 Agmo ENSRNOG00000023116 ENSRNOT00000032108 1 1 1 80 6 57024432 57047685 GCAAATACAGCGGTATTATCTC 58 57047725 57047744 GAAACCAATGGATGTCAAGG 57 NA Rattus norvegicus 81 AABR07055878.1 ENSRNOG00000046286 ENSRNOT00000055284 3 1 1 91 7 14743244 14743265 GGTTAGAATAGTTGTGGAACCT 58 14743317 14743529 GTTGTGGCCATTCATTCAC 58 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 1 2 2 80 1 280146539 280150076 AGAAGCAGATAGCAGTAGTCC 59 280146479 280146498 CTGGATACAGAACCCAACAC 58 NA Rattus norvegicus 81 LOC498675 ENSRNOG00000046155 ENSRNOT00000075271 1 1 1 81 8 117171347 117171365 ATTCTGGCACGTGAAAGAC 59 117171407 117172954 CCATACCCTTCCTTAAACTCTC 58 NA Rattus norvegicus 81 Cbr3 ENSRNOG00000001701 ENSRNOT00000002310 1 1 1 80 11 33909802 33911441 GCATCGCCTTTAGAATGGA 58 33911484 33911503 TAGTGGCAAAGAAGTTCGTC 58 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000084588,ENSRNOT00000068407 3 2 2 80 4 156779843 156780941 AACGGCTTACAGTTTCCTC 58 156780984 156781003 GATCATCCGTCTTCGAATCC 58 NA Rattus norvegicus 81 Nprl2 ENSRNOG00000021660 ENSRNOT00000051522 2 1 1 80 8 116298848 116298866 CTCAGGCTAAGACTTGTGC 58 116298910 116299070 AGCTACTTTCGAGCTCCAG 59 NA Rattus norvegicus 81 Mir141 ENSRNOG00000035577 ENSRNOT00000053700 2 1 1 60 4 157236410 157236428 AGTCCATCTTCCAGTGCAG 59 157236368 157236387 TACCAGACAGTGTTAGGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg9 ENSRNOG00000019596 ENSRNOT00000026669 3 1 1 84 1 81266234 81267728 CCATTGAGTACCTGCTGGA 59 81267776 81267794 GACATGACCATGGACTTGC 59 NA Rattus norvegicus 81 Anxa11 ENSRNOG00000010984 ENSRNOT00000014941 1 1 1 80 16 3870759 3870779 AGACATCGAGAAGAGCATCTG 60 3869791 3870718 TTCTTGAGGCATTTCACCAC 59 NA Rattus norvegicus 81 Pnma3 ENSRNOG00000052022 ENSRNOT00000079424 2 1 1 85 X 153065742 153066241 GAACTCAGATGGGAACATCC 58 153066289 153066307 CAAATGGACTTGAGGTTGC 57 NA InUTR Rattus norvegicus 81 Esyt2 ENSRNOG00000032391 ENSRNOT00000006582 2 1 1 80 6 144217038 144219426 TCCCATACCAAAGGGTGTC 59 144219469 144219488 AGGCCTTTAAGGTAGGTGTC 59 NA Rattus norvegicus 81 RGD1559896 ENSRNOG00000018836 ENSRNOT00000025512 2 1 1 80 19 57400518 57409860 GGAGACAAGGAGTCAAATGGA 60 57400458 57400479 GTATCATTGGTCATAGTGGCAG 59 NA Rattus norvegicus 81 Ferd3l ENSRNOG00000011091 ENSRNOT00000014731 3 1 1 60 6 53372157 53372177 TTATGAGAAGAGGCTGTCCAG 59 53372197 53372217 GAAAGAAATGTAGACGATGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac5 ENSRNOG00000020905 ENSRNOT00000055187 1 1 1 80 10 90142173 90142192 CGTGCTCTACATCTCTTTGC 59 90141863 90142130 CCTCCACCAACCTCTTCAG 60 NA Rattus norvegicus 81 Tmem41a ENSRNOG00000046283 ENSRNOT00000074826 2 1 1 80 11 82738459 82738477 CTGGTTCTTGAACCTCTCG 58 82738521 82740401 GGGATCAAACCGATAAGCA 58 NA Rattus norvegicus 81 Prp15 ENSRNOG00000028983 ENSRNOT00000045884 2 1 1 82 4 166222501 166224139 GGAAGCAGAACTTCAGAGC 59 166224185 166224203 CATTAGCAGGTGGTCTTGG 58 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000015365 ENSRNOT00000020669 3 1 1 80 9 88444450 88444468 GTCATCCTGGACCTGATGG 60 88444510 88446479 AACCTTGATCTCCCTTAGGTC 59 NA Rattus norvegicus 81 Pde3b ENSRNOG00000011417 ENSRNOT00000015498 2 1 1 80 1 184055548 184060989 CAAAGCAGATTCAGATGCTAGAC 60 184061024 184061047 CTCTTATCTGGAATACAGCAACTC 59 NA Rattus norvegicus 81 AABR07034532.1 ENSRNOG00000001713 ENSRNOT00000002330 3 1 1 60 11 74865427 74865446 TTTGATGACAACGACCTGTG 59 74865386 74865405 TCGGCTCCTTACCTATACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548,ENSRNOT00000079783 2 2 2 80 19 57474284 57475784 TGAGAAGATTCTGAGCCAGG 59 57474223 57474242 TCATTGGTGCTGTCATTGTC 59 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 3 2 2 81 X 14967045 14967243 GACTCACAGATGTCTTACACAG 59 14966985 14967003 GTTCCGTGTAAATGGGCAG 59 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000048801 ENSRNOT00000047421 2 1 1 60 10 61088449 61088468 CATGGCTTATGACCGTTTCC 59 61088408 61088427 GTTCATTCGGGTGCTATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a4 ENSRNOG00000017226 ENSRNOT00000023256 2 1 1 80 10 56557062 56558328 AGATCGGCTCTGAAGATGG 59 56557000 56557020 CAAGCACAGCTGAGAATACAG 59 NA Rattus norvegicus 81 Sertm1 ENSRNOG00000014046 ENSRNOT00000018780 3 1 1 277 2 144322454 144322472 CGGAGCTTTCTTAGCTTCC 58 144306204 144306222 CTGCAAATCCAGATGAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps2 ENSRNOG00000014179 ENSRNOT00000019508 3 1 1 80 10 14088485 14088582 AAGACAAGGAGTGGATCCC 59 14088625 14088644 GGTAGATCTCCTCCAAGGAC 59 NA Rattus norvegicus 81 Mtpn ENSRNOG00000011857 ENSRNOT00000015808 2 1 1 80 4 63039279 63039297 GACAAGGAGTTCATGTGGG 58 63023224 63039237 GTTGACATCTTCTCCCTTAGC 59 NA Rattus norvegicus 81 Rnasel ENSRNOG00000027017 ENSRNOT00000032157 1 1 1 80 13 71198492 71199394 CGTCTAAGATCGACAAACGTG 60 71199433 71199454 CACCTACAGTATCCCGATAACC 60 NA Rattus norvegicus 81 LOC100365321 ENSRNOG00000027055 ENSRNOT00000034929 2 1 1 97 4 59365487 59365505 ATGAGACGACCAAACACTG 58 59365566 59371149 CTCCAGAACTGGAACTCAG 57 NA Rattus norvegicus 81 Pik3r3 ENSRNOG00000000145 ENSRNOT00000000157 2 1 1 80 5 135105413 135105434 TTACAAACGGAATGAAGGACTG 59 135105472 135108486 TTACCTCTTCCCTGGAAATGTC 60 NA Rattus norvegicus 81 rno-mir-196b-1 ENSRNOG00000049663 ENSRNOT00000071351 3 1 1 60 4 82284900 82284919 AGGTAGTTTCCTGTTGTTGG 58 82284859 82284878 GTAATGAAGGCAGTGTCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910835 ENSRNOG00000048343 ENSRNOT00000075524 3 1 1 80 8 122417671 122420916 TACTTCAAGGCCAATGACCT 59 122417610 122417628 CATCATCTCGTCCTCAGGA 58 NA Rattus norvegicus 81 Kcnd1 ENSRNOG00000039544 ENSRNOT00000011994 1 1 1 80 X 15513668 15519605 ATGACCACACTTGGGTATGG 60 15513607 15513626 ACCACTAAGTGAGCAGATGG 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 3 2 2 81 4 165427475 165427495 AAACCTGTGGCTGTATATGTG 58 165427334 165427432 TCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Ncoa2 ENSRNOG00000007975 ENSRNOT00000011026 2 1 1 80 5 5656745 5656765 TCAGAAATACGAGACGATGCA 60 5656807 5659630 CAGGACTGCAAATCTTCGC 60 NA Rattus norvegicus 81 AABR07014259.1 ENSRNOG00000042166 ENSRNOT00000068215 1 1 1 80 14 6221145 6221165 GATCCTTCCCAGAAGAGTCTC 59 6221203 6221423 TTCCCAGTAATAGCCTATAGCAG 59 NA Rattus norvegicus 81 Tbx4 ENSRNOG00000003544 ENSRNOT00000004736 2 1 1 80 10 73357906 73358589 CCAGAACCACAAGATCACAC 59 73358632 73358650 AGGTCACTGTCATCACTGC 60 NA Rattus norvegicus 81 Mogs ENSRNOG00000008648 ENSRNOT00000011521 3 1 1 84 4 113949595 113949614 CAGTGAACTTGGTGACTTCC 59 113949661 113949825 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 1 2 2 80 6 24163120 24181541 CCTATCAGATCTTTCCCGACC 60 24181583 24181601 GTTCCACCACTATGGAGGG 60 NA Rattus norvegicus 81 Rbm18 ENSRNOG00000006763 ENSRNOT00000009706 1 1 1 80 3 15448915 15448936 ATGATAAGATCCTTCCCATCAG 57 15445938 15448874 TCTTTGCAGTGACACTGAG 58 NA Rattus norvegicus 81 Tex38 ENSRNOG00000010162 ENSRNOT00000013480 3 1 1 82 5 134637528 134637927 TCTCTGGCATGTGGATCTC 59 134637464 134637484 GTGCAGAAAGATTATGCAGCT 59 NA Rattus norvegicus 81 Aldh1a3 ENSRNOG00000052070 ENSRNOT00000085158 1 1 1 80 1 127308833 127308852 CTACAACGCATTCTATGCAC 57 127302978 127308793 AAAGCGTATTCACCTAGTTCTC 58 NA Rattus norvegicus 81 LOC100909523 ENSRNOG00000049237 ENSRNOT00000074142 2 1 1 60 6 125317410 125317428 GGGTACTTGCAGATCAAGG 58 125317368 125317387 CAATGGTCAGGTTACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909523 ENSRNOG00000049237 ENSRNOT00000074142 3 1 1 60 6 125317407 125317425 TACTTGCAGATCAAGGCCC 60 125317365 125317384 CTGCAATGGTCAGGTTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou1f1 ENSRNOG00000000715 ENSRNOT00000000905 3 1 1 80 11 2657235 2659297 GAATTAAGTTAGGATACACCCAGAC 59 2659333 2659353 TGGTTGTTTGACTGAATTCGG 60 NA Rattus norvegicus 81 Lrrc75a ENSRNOG00000027286 ENSRNOT00000030379 2 1 1 70 10 48933952 48933971 ATTCACAGTGGAGGAGACAC 60 48930920 48930938 AGAAAGGAGGGCCTTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Lrrc75a ENSRNOG00000027286 ENSRNOT00000030379 3 1 1 71 10 48933954 48933972 CATTCACAGTGGAGGAGAC 58 48930920 48930938 AGAAAGGAGGGCCTTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Os9 ENSRNOG00000025570 ENSRNOT00000049895 2 1 1 80 7 70381617 70381635 ACAGCTGAAACAGATCGAG 58 70381390 70381575 TTGATCTCAATCTTGCCTTCC 58 NA Rattus norvegicus 81 Rufy1 ENSRNOG00000003536 ENSRNOT00000004740 3 1 1 80 10 35901889 35904507 CTTCAAGAAGAGCTTTCAGCT 59 35901829 35901850 TTCATTCTGTTCTCTTAGCTGC 59 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 1 2 2 80 14 786146 786167 AGACATACAATCTGAACATGGG 58 786205 786227 AAATATCCCAGTAAGTGGAAGG 58 NA Rattus norvegicus 81 Atp1b2 ENSRNOG00000011227 ENSRNOT00000015076 2 1 1 80 10 56208836 56208955 TTCTTGGAGCCTTACAACG 58 56208774 56208794 ATCGGGTTGCTCATAATATCG 58 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 2 2 3 80 4 164300936 164300956 CATGGATGTAAACAGACCTGC 59 164295239 164300897 CTGTAGGAACTTCAGTTCATCC 59 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000033803 ENSRNOT00000045156 2 1 1 60 9 69791058 69791078 GGCACCTAAAGATTGTCTACC 59 69791099 69791118 TTAGGTGTTGTTCCTTCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setd8 ENSRNOG00000001062 ENSRNOT00000066253 2 1 1 82 12 37569822 37569840 GATTCTACCAGTGTAGCGG 57 37569394 37569776 CCTTGAGACTTCTTCCGAG 57 NA Rattus norvegicus 81 Lnpep ENSRNOG00000047387 ENSRNOT00000017718 2 1 1 80 1 59338451 59338471 CCTGGTTGCTTTCATTGTAGG 60 59334189 59338413 GGTACAGCATATACAGAAACCAG 59 NA Rattus norvegicus 81 Rgs13 ENSRNOG00000003888 ENSRNOT00000005163 3 1 1 93 13 60994709 60997670 CCCTTCAAACCTTACTTTGGA 58 60973441 60973459 TGCTGTGTACACTACTGGG 59 NA Rattus norvegicus 81 St3gal3 ENSRNOG00000019843 ENSRNOT00000056842 1 1 1 80 5 136940301 136940320 TACTCCAATGGGAAGACTCC 59 136862254 136883611 GCCTATCATACTCTGTGCCT 59 NA Rattus norvegicus 81 Cd274 ENSRNOG00000016112 ENSRNOT00000034421 2 1 1 80 1 247526566 247532977 ACATTGAAAGTCAACGCTCC 59 247533016 247533038 CATTAGTTCATGCTCAGAAGTGG 60 NA Rattus norvegicus 81 Ccl22 ENSRNOG00000016535 ENSRNOT00000022167 2 1 1 62 19 10681072 10681090 TCTCGTCCTTCTTGCTGTG 60 10679884 10679902 TCCACATTGGCACCATAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ceacam10 ENSRNOG00000046222 ENSRNOT00000057384 2 1 1 100 1 83004000 83004788 GACTACTGCTCACAGCCTC 60 83004852 83004870 GCTGTTCTCCTCAACAACG 59 NA Rattus norvegicus 81 Cdk4 ENSRNOG00000025602 ENSRNOT00000031796 2 1 1 80 7 70350278 70350297 TATAGACCAGGACCTACGGA 59 70350338 70350470 CGCATCAGATCCTTAATGGTC 59 NA Rattus norvegicus 81 Creb3l2 ENSRNOG00000012826 ENSRNOT00000017338 2 1 1 80 4 64899584 64916472 ATGGCTTCAATGACGAGGA 59 64899522 64899541 GCTCTGTCTTGATGGTAGCT 60 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350,ENSRNOT00000080382 1 3 3 80 3 29898169 29898187 GATAAGGGAGAGCGTTGTG 58 29893084 29898126 TTCATTTCTTCTGGACCGTC 58 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000076103,ENSRNOT00000039868 2 2 2 60 8 4548308 4548326 GCACCAGTGTTCCATTGAC 60 4548266 4548284 CTGTGATCCTGTAGTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmg4 ENSRNOG00000039265 ENSRNOT00000060132 3 1 1 148 17 31411765 31411784 CTTCACAACTTCAGTGCGAG 60 31408981 31411654 ACAGGGATGGAATCGAAGC 60 NA Rattus norvegicus 81 Adra1d ENSRNOG00000021256 ENSRNOT00000028877 3 1 1 196 3 124144128 124144146 GGAACACAGAGTAGCAAGG 58 124130888 124130906 TTGAAGACACCCTCTGACG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911167 ENSRNOG00000025534 ENSRNOT00000029272 3 1 1 89 X 15380015 15380033 TACCTGTGCAATGCTTGTG 59 15380086 15381136 CTTGCTGACAATCATTCGC 58 NA Rattus norvegicus 81 Arpc3 ENSRNOG00000008673 ENSRNOT00000011499 1 1 1 84 12 39664038 39664056 AAGCTCATTGGCAACATGG 59 39659190 39663993 CAATATCCGTGTCTTTCGTCTC 59 NA Rattus norvegicus 81 Sycp1 ENSRNOG00000016835 ENSRNOT00000023333 2 1 1 80 2 205314425 205314449 GAAGAAAGAGACTCAGAATTAGGAC 59 205313027 205314388 TTCAGTCTCCAAAGCAACCT 60 NA Rattus norvegicus 81 LOC100911130 ENSRNOG00000048613 ENSRNOT00000066373 1 1 1 101 X 15442145 15444312 GATTGGAGGTAGCTTTGCAG 59 15442063 15442081 CTGGTGATGGAGTTCCAGG 60 NA Rattus norvegicus 81 AABR07065823.1 ENSRNOG00000030235 ENSRNOT00000046885 1 1 1 82 6 142932976 142933076 CAGCTACAGGTGTCCACTC 60 142932912 142932930 AGACAACTTCACAGAGGCC 60 NA Rattus norvegicus 81 Fbp2 ENSRNOG00000017637 ENSRNOT00000023865 1 1 1 84 17 382092 385996 ACAGAAAGACCACAGAGGA 58 382026 382044 TACAGTGCATAACCTGCAG 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 2 3 3 80 6 76461472 76461493 CCATTCTCACCAATATAGGAGG 58 76455480 76461434 GATTTGTAAGGTTTACCTCCCA 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 3 3 3 80 6 76502625 76511221 TATGAAATGGACAAGAGGTTGG 59 76502566 76502587 TAGTGTCTTTAAAGGTAAGGCC 58 NA Rattus norvegicus 81 Lipe ENSRNOG00000020546 ENSRNOT00000027910 3 1 1 89 1 82257059 82265670 CACTACTGGGATACAGCCTC 59 82256989 82257007 CATGTTGTCTTCTGCGAGC 60 NA Rattus norvegicus 81 Sun2 ENSRNOG00000015177 ENSRNOT00000046399 2 1 1 80 7 120955893 120956432 GGCTCGTATCCAGGAAGAG 59 120955831 120955852 TGGACGATCTTCTTGAATAGGT 59 NA Rattus norvegicus 81 Urod ENSRNOG00000018211 ENSRNOT00000024719 2 1 1 80 5 135856653 135856794 TGCCCATGATCATCTTTGC 59 135856591 135856611 CAAGTCCAACTACCTCATAGC 58 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 1 2 2 80 9 10998329 10998350 GGACAATATCCATTTGCATCCA 59 10998390 10999104 TTGATTCGTTCCTGGAACAC 59 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 3 2 2 80 5 153855816 153857455 AGTACAGAAAGGTTTCACCG 58 153857496 153857516 GATTCTGGGATTACTGACCTC 58 NA Rattus norvegicus 81 Tmc2 ENSRNOG00000007017 ENSRNOT00000009323 3 1 1 80 3 122752440 122752811 GATCAAGGACATTGAAAGTCAC 58 122752851 122752870 AGGTTTACTCCGTACATCCA 58 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325,ENSRNOT00000076529 2 2 2 80 8 4637094 4651637 GAAGTCTAAAGTGGACCTGGA 59 4651678 4651697 AGATTCACCGAGTGATTCCT 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 3 2 2 80 11 472603 476572 GGGAATGGGCACTTAAGAC 58 472541 472559 ATGAACTGCTTGTGTAGGG 58 NA Rattus norvegicus 81 Mab21l3 ENSRNOG00000016044 ENSRNOT00000021487 1 1 1 80 2 204245664 204253669 ACTGAGTAAGATGGACCTGAG 59 204245604 204245622 GTAGTCAGAAGGTGGACGA 59 NA Rattus norvegicus 81 LOC100911243 ENSRNOG00000042470 ENSRNOT00000042140 3 1 1 139 X 15419088 15419106 GTAGGGAGCATCCTAACCC 59 15422529 15422548 CTAGACTTTGTTGGCAAGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183,ENSRNOT00000022382 1 2 2 80 1 277095189 277095626 GTGAAATAGGTCCGGACGA 59 277095670 277095688 GGTTCTGGTTGACTGTCCT 59 NA Rattus norvegicus 81 Cfd ENSRNOG00000033564 ENSRNOT00000015029 1 1 1 80 7 12635138 12635246 ATGGATGGAGTGACCAAGG 59 12635076 12635094 ATGCTTGTAGGGTTCAGGA 58 NA Rattus norvegicus 81 AABR07027277.1 ENSRNOG00000059415 ENSRNOT00000083122 1 1 1 80 17 22675557 22675575 ATCCTGAGTGTCCTATGGG 58 22673597 22675513 CTCCTCGTTCTTTCACAGC 59 NA Rattus norvegicus 81 Ccer1 ENSRNOG00000004875 ENSRNOT00000006455 1 1 1 60 7 38947073 38947092 GTGTGACGAAGAGGTTTGTG 60 38947115 38947133 CTCTCCATCCACTTCCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904,ENSRNOT00000015223 2 2 2 80 9 20127483 20127620 CTCCCAGAAACATACATTACCT 58 20127424 20127444 AGAGGATGTGTTCTCTAGGTC 58 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991,ENSRNOT00000087241 1 3 3 80 4 58832926 58833950 GAGGAAGGACCAACAACGA 60 58832864 58832882 ATCACTTCCAAGGTTGGGT 59 NA Rattus norvegicus 81 LOC100910483 ENSRNOG00000048545 ENSRNOT00000017253 3 1 1 80 9 113835289 113835309 TCATCCATGAAGCGTAAACTG 59 113828861 113835248 TGGGTCTGAATCTGTGTCTG 60 NA Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 1 2 2 80 7 133457354 133457375 CCTGCTAATCTCCTTAACATCC 58 133460969 133469105 TTATCCTCCTCAGAAACTCCA 58 NA Rattus norvegicus 81 Adamts1 ENSRNOG00000001607 ENSRNOT00000002187 2 1 1 80 11 25346043 25346285 ATGAAGCACTTTGCTACTCCT 60 25345983 25346001 TCCACCACAGGTTCTTGAG 59 NA Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 1 2 2 80 10 56665292 56665310 AAGCTGACAAGTACTGCCA 59 56665354 56665441 GTTGCTGGACGAATCTCTG 59 NA Rattus norvegicus 81 Onecut1 ENSRNOG00000008095 ENSRNOT00000032280 3 1 1 124 8 81767274 81767292 CTGGAGCAAACTCAAGTCC 59 81792580 81792598 CGTGTTCTTGCTCTTTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775,ENSRNOT00000037589 1 2 2 95 3 149337641 149338102 TGTCATCTACGGCATGGAG 59 149337564 149337582 TGGAGCTGAAATGTCTGGA 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 2 2 2 80 7 66676176 66676198 CTCAAGAGATTCTCCTATAGTCG 58 66676236 66678437 CATATCCAAGTCACTGATGGG 58 NA Rattus norvegicus 81 Defb49 ENSRNOG00000039651 ENSRNOT00000060805 2 1 1 67 9 24451381 24451400 TCTCGACCTGTTGAAGACAG 60 24446416 24446434 TGCCTTTCTTGAGAAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000090316 1 1 5 80 4 164743613 164743633 GCGTGAATGTAAACAGATCTG 58 164520728 164743573 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Timm17b ENSRNOG00000025156 ENSRNOT00000037066 1 1 1 101 X 15341333 15343500 GATTGGAGGTAGCTTTGCAG 59 15341251 15341269 CTGGTGATGGAGTTCCAGG 60 NA Rattus norvegicus 81 Hspa13 ENSRNOG00000060979 ENSRNOT00000081096 3 1 1 80 11 14159196 14160685 GAGATGACGATCTTAGGTTCC 58 14159136 14159156 AGTTGGCAGTGGTAAATACTG 58 NA Rattus norvegicus 81 Cyp4f4 ENSRNOG00000032895 ENSRNOT00000041034 2 1 1 80 7 14901780 14901799 GAGGATGATATCCTCAAGGC 57 14901842 14903750 ATCTTCATCCTTGGTCAGC 57 NA Rattus norvegicus 81 Sost ENSRNOG00000020805 ENSRNOT00000028238 2 1 1 87 10 89899939 89899959 AACTAGAGAACAACCAGACCA 59 89897496 89899890 TACTCGGACACGTCTTTGG 60 NA Rattus norvegicus 81 Tmem132a ENSRNOG00000021338 ENSRNOT00000028971 2 1 1 80 1 226914458 226914808 TCACCTCTATCGAGGTTCGA 60 226914397 226914417 AGACCTTGTCATCTGTCACAG 60 NA Rattus norvegicus 81 Olr1383 ENSRNOG00000047402 ENSRNOT00000044667 1 1 1 60 10 34300335 34300355 CCTTACTCCTATGCTCAATCC 58 34300295 34300313 TGCTCCTATCACATCACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905,ENSRNOT00000081945,ENSRNOT00000040566,ENSRNOT00000045020 3 5 5 80 2 258825657 258828089 ACCTTAAGGCCATTGTGGA 59 258825595 258825616 CTGAGGAATTCATGTGTTTCCA 59 NA Rattus norvegicus 81 Ust5r ENSRNOG00000061890 ENSRNOT00000051289 2 1 1 80 1 224521467 224525825 TATACTCACAAGGTGGCTGTC 60 224521407 224521429 CTAAGTTCCTTTAAGCCCTTCTG 59 NA Rattus norvegicus 81 Bcl2l14 ENSRNOG00000028632 ENSRNOT00000032229 1 1 1 80 4 168172135 168175031 CTCGAAGAAAGATGGAGAAGAC 59 168175072 168175090 TCTCTTCCCAACTGATCCC 58 NA Rattus norvegicus 81 Cd38 ENSRNOG00000003069 ENSRNOT00000004121 3 1 1 80 14 71718124 71718145 AAATGAGCTGAAGTCGATTGTG 60 71716640 71718086 TGAAGAAATCTTACAGGTCGGT 60 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 2 1 1 113 7 102589127 102589145 TCTCTTCTTCCTCGGACTC 58 102589222 102590239 CTTCTTCAGAGTCGCTGCT 60 NA DesignNoJunction Rattus norvegicus 81 Pak1ip1 ENSRNOG00000023799 ENSRNOT00000036195 2 1 1 84 17 21587994 21588014 AGCAAAGATGAGACCATTCAC 59 21584611 21587948 AAGTTACTGTGCCACTGTG 58 NA Rattus norvegicus 81 Sharpin ENSRNOG00000012812 ENSRNOT00000018031 2 1 1 80 7 117413691 117413780 CGAGAAGTTTCAGGACACAG 59 117413630 117413648 CAGCTCCAATGACTGAGGA 59 NA Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201,ENSRNOT00000079883 1 2 2 80 4 65776265 65779210 CACCCTGGAGACTACTCTG 59 65776203 65776222 AAGCTCTTCTTCAAAGCCTG 59 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657,ENSRNOT00000013232 2 2 2 81 4 123609826 123610044 AGCATTCCAGAGGAGTTCC 59 123610089 123610107 CTGAGATAGTCAGGCCCAG 59 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 3 2 2 81 5 64294798 64294816 GCAGCTCTACTTCCTTCAG 58 64294861 64303955 AACAGCAAAGGACTCTTGG 58 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 3 4 4 80 14 79421772 79421794 CCAGTCTGGAGCTTATTAAACTG 59 79421833 79425701 CATGATATGGACCACCTTGC 59 NA Rattus norvegicus 81 Tmprss15 ENSRNOG00000001916 ENSRNOT00000051213 1 1 1 80 11 17601340 17601358 GCATATTGCTTGTGCTGAG 58 17593269 17601296 GAGTTTGCACTCCCTAGTC 58 NA Rattus norvegicus 81 Tmprss15 ENSRNOG00000001916 ENSRNOT00000051213 3 1 1 80 11 17649862 17649882 TTTCCAAGCCAATCGTTATCC 59 17647430 17649822 GAAAGTCCTTGGTTTACACGG 60 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 3 2 2 83 2 24670390 24670408 CCTACACTGAACTGCTGGT 59 24670455 24689819 CAGATGCAAACCTGTAGCC 59 NA Rattus norvegicus 81 Pcgf3 ENSRNOG00000000062 ENSRNOT00000000071 3 1 1 81 14 2283263 2283282 CTGGAGGAGAACAATACCTG 57 2280249 2283222 TTCTGTCATGACCGATATACTG 58 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823,ENSRNOT00000043387 2 2 2 80 1 225928134 225928606 ACTGTGGATGTGCAGTCTC 60 225928072 225928091 CATGCTGATCTTGGGAAAGG 59 NA Rattus norvegicus 81 Moxd2 ENSRNOG00000012916 ENSRNOT00000017495 1 1 1 80 4 69118105 69118893 GAAGAAGCATCAGAGAATCCC 59 69118045 69118065 AGCTGTCTTAATGTTCTCTGG 58 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 2 2 2 80 8 78892925 78893343 CATCACAAGGTACAAATTGCTC 58 78893381 78893402 GAATATTACACTTGGGACATGC 58 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 3 2 2 80 8 78892864 78892883 GATGCCTCTTCTGTAGTCTC 57 78892924 78893341 GCAATTTGTACCTTGTGATGG 58 NA Rattus norvegicus 81 Tnfsf12 ENSRNOG00000045670 ENSRNOT00000064401 1 1 1 95 10 56298572 56298590 TCCTGGAACAACTAGTCCG 59 56297633 56297732 GTGGATGAACCTCATAATGGG 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 2 1 2 141 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120114 4124692 TGAGACACTGATCCTCTCAG 58 NA Rattus norvegicus 81 Med29 ENSRNOG00000019702 ENSRNOT00000026720 2 1 1 60 1 85368513 85368531 CGCTACAAGATGCTCATCC 59 85368552 85369356 CAGCAACTTTCATCAAAGTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ythdf3 ENSRNOG00000010084 ENSRNOT00000067556 3 1 1 82 2 100683769 100696659 GCCAGACAAATCAGAATAACAG 58 100696701 100696720 TGGAAATCCAATGGATGGAG 58 NA Rattus norvegicus 81 Olr1369 ENSRNOG00000050820 ENSRNOT00000072476 1 1 1 60 10 12508513 12508532 GAACCCTTTCATCTACAGCC 58 12508472 12508491 GAGCACTTTCCTTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dedd2 ENSRNOG00000046112 ENSRNOT00000072616 1 1 1 123 1 82074122 82081601 AAGGTGACCTGTGACATCC 59 82074017 82074035 GTCCAAACACATCCAGCTG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000016819 2 1 3 241 8 22966769 22966787 TGAGGCGGGTACTAAATGC 60 22966991 22967650 GAATCGAATCTTCTGGAGCC 59 NA DesignRelaxed Rattus norvegicus 81 Rplp1 ENSRNOG00000011955 ENSRNOT00000015893 3 1 1 90 17 9234677 9234697 ACGGAGGATAAGATCAATGCT 59 9233699 9234625 CATTGGCCAGAGCATTAGC 59 NA Rattus norvegicus 81 Sell ENSRNOG00000002776 ENSRNOT00000003733 1 1 1 80 13 82370811 82372880 CACTGCTGTGTTGTGATCTC 59 82372921 82372941 CCCAGTTCATGGATCTTTCAG 59 NA Rattus norvegicus 81 Ncapg ENSRNOG00000038572 ENSRNOT00000058838 1 1 1 80 14 69903450 69903471 GTTTGGTAGAACTCAGTAGCAG 59 69903172 69903411 TCCTATCTGTTACTTGCTCCA 58 NA Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 1 1 1 80 1 100205107 100205125 ATGTTCCTCTCCTTCCGAC 59 100204591 100205063 CACAATGCCAATGCTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Scamp1 ENSRNOG00000061582 ENSRNOT00000084729 1 1 1 80 2 23877175 23877193 TGGTTCTTGCTCTTTACCC 57 23864175 23877131 GGATGAGATCCAACCACTG 58 NA Rattus norvegicus 81 Inhbc ENSRNOG00000007700 ENSRNOT00000010240 3 1 1 67 7 70661103 70661121 TTGGAGCATGACCAGAGAC 59 70649565 70661072 TTGATGTTGGAGAGGCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Ndufaf7 ENSRNOG00000005279 ENSRNOT00000007000 2 1 1 81 6 1541128 1542782 GAAGCCTTCATACAACGCG 60 1542827 1542845 GGGACAGTTCCTGGATGAC 60 NA Rattus norvegicus 81 LOC102557117 ENSRNOG00000047922 ENSRNOT00000030857 3 1 1 84 5 187365 187383 TTTGCTGGATCCTTCACAG 58 187428 187640 CCAATTGTAACCTATAGCAGTG 57 NA Rattus norvegicus 81 RragB ENSRNOG00000050535 ENSRNOT00000075249 3 1 1 80 X 19361182 19365758 GGTGCAACAATACTAGACCG 59 19361121 19361140 TCCAACAGAGTCTACGAGAG 58 NA Rattus norvegicus 81 Rp1 ENSRNOG00000008807 ENSRNOT00000047093 2 1 1 82 5 15044131 15051301 AAGGTTCAAGTTCTGGTCTC 58 15051345 15051364 CCTTCAGAAGAAGTCAGACG 58 NA InUTR Rattus norvegicus 81 Zfp53 ENSRNOG00000042347 ENSRNOT00000015343 2 1 1 256 1 61375988 61376008 ATCAGAGGGTTCATACTGGAG 59 61377453 61377477 GGTATACTTTAGCATGGTTTCTCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem151b ENSRNOG00000019958 ENSRNOT00000031706 1 1 1 165 9 17844056 17844074 ATGGAGATGCCTACACGAC 59 17844915 17844933 CTGAAGCACTTGGTGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029,ENSRNOT00000074720 3 2 2 81 1 83049241 83049327 ATCTGAATGGGTCTCTAGGC 59 83049370 83049389 TGGATCACTATGGAAGGCAC 60 NA Rattus norvegicus 81 Crh ENSRNOG00000012703 ENSRNOT00000016953 1 1 1 192 2 104461733 104461751 GTACCTCGCAGAACAACAG 59 104460890 104460908 AAGAAATTCAACGGCTGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Crh ENSRNOG00000012703 ENSRNOT00000016953 2 1 1 193 2 104461733 104461751 GTACCTCGCAGAACAACAG 59 104460889 104460907 CAAGAAATTCAACGGCTGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403,ENSRNOT00000070958 1 2 2 95 13 84068324 84068344 CAGAAAGACAAGATGGCAGAG 59 84069167 84070250 GCTGAGACCCTGGTAAAGG 60 NA Rattus norvegicus 81 Fam25a ENSRNOG00000055025 ENSRNOT00000089114 2 1 1 114 16 10706014 10706032 TACCTGTCACTGTCTGCTG 59 10704139 10705936 TCCTCCACTGCATGAACTG 60 NA InUTR Rattus norvegicus 81 Aqp7 ENSRNOG00000009686 ENSRNOT00000012975 1 1 1 80 5 57360784 57369170 CCTATGTCTTGATGGTGTTTGG 59 57360725 57360743 TGACACCAAGATAGCTGCC 60 NA Rattus norvegicus 81 Slc19a3 ENSRNOG00000057256 ENSRNOT00000083667 2 1 1 80 9 88812721 88812741 AAAGGCTCCCTCTAAAGACTC 59 88810422 88812680 GAGAATGAAGCCAAAGCTCC 59 NA Rattus norvegicus 81 Slc22a13 ENSRNOG00000056476 ENSRNOT00000078303 1 1 1 80 8 127886613 127886819 CATCCCAGGAGATCTTCCC 59 127886551 127886569 GAAATGGTGAAGGCAGCAG 60 NA Rattus norvegicus 81 Pde8b ENSRNOG00000010280 ENSRNOT00000044087 3 1 1 80 2 24751073 24779716 GACAGTAGCAAGCAGATCCA 60 24748980 24749000 CTTGTGTCTGAACGAATGAGG 59 NA Rattus norvegicus 81 RGD1306474 ENSRNOG00000005790 ENSRNOT00000007610 2 1 1 80 7 60305800 60306735 GAATTACTACATGGGAGGCA 57 60305739 60305757 GTTATAGACTGCAGCCCTG 58 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 3 3 3 80 4 165986751 165988389 TGGCTCAGATGAAGAGGTC 59 165985856 165985875 TGACCATGTTTCTGGTTCTG 58 NA Rattus norvegicus 81 Grhl3 ENSRNOG00000029427 ENSRNOT00000065247 2 1 1 80 5 153908641 153908661 GACATGTATGACAACAGCTCC 59 153907488 153908600 GGTGTACTCAAAGTCGTGTG 59 NA Rattus norvegicus 81 Lrrc28 ENSRNOG00000023274 ENSRNOT00000033858 1 1 1 80 1 128501739 128501760 CATGTTTACCTTTGTCTACCCT 58 128487861 128501699 ATACTTGTCCTCCTCTGGTG 59 NA Rattus norvegicus 81 Olr1384 ENSRNOG00000047001 ENSRNOT00000071365 3 1 1 60 10 34332706 34332726 TTTGAGAAGGTAGGGTTTGTC 58 34332666 34332687 CAATGATGGAGAAGGGAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hba2 ENSRNOG00000047321 ENSRNOT00000048977 3 1 1 81 10 15589570 15589775 TCCTGTCAACTTCAAGTTCCT 59 15589509 15589527 CATGGCAGGTGTGAAATCC 59 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 1 2 2 80 12 42486590 42488682 CTATCAGAATGACAAGATAACCCAG 59 42486534 42486552 CTGCCATTGCCAGTATCTC 58 NA Rattus norvegicus 81 Tcf21 ENSRNOG00000016700 ENSRNOT00000022798 3 1 1 159 1 23907247 23907265 CAAGACTACCCTTCCCTGG 59 23907388 23909034 CATAAAGGGCCAAGTCAGG 58 NA Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000084446 3 1 2 95 9 91776728 91776746 GCAGTCATCTTCCATGAGC 59 91668214 91776669 CAGATACGTGACCTTGCAG 58 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 2 2 2 80 5 151449232 151451098 GGATACCTACATTCAATGCTCAG 59 151449174 151449192 AGACTTCGTCGAACCACTC 60 NA Rattus norvegicus 81 Ftsj1 ENSRNOG00000004776 ENSRNOT00000006365 1 1 1 80 X 14999920 14999939 GTTATTGTGCCCTTTGTGAC 58 14999981 15000078 GCCATTGTCTAGATCCAGAG 58 NA Rattus norvegicus 81 Lrrk1 ENSRNOG00000012730 ENSRNOT00000016959 2 1 1 80 1 127177155 127177173 TCGTCCTTCTTCTCATCCC 59 127175041 127177113 CACCGTGTAATTCCTTGACTC 59 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240,ENSRNOT00000082462 3 2 2 81 12 38513503 38513522 GTGGAAGATGAGGAGAAGGA 59 38512883 38513459 GCTTGTCGATCTCATCCAG 58 NA Rattus norvegicus 81 Ccrn4l ENSRNOG00000010799 ENSRNOT00000014348 3 1 1 60 2 140302960 140302980 GTTATGCAGTGGAACATCCTC 59 140304949 140304969 ACTGGACAAAGTTGTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Arhgap39 ENSRNOG00000016566 ENSRNOT00000052227 2 1 1 80 7 117800341 117800359 CCAAGTTCCACTCCTACCT 58 117795472 117800299 TTATGTGCTGTGTCACTTTGG 59 NA Rattus norvegicus 81 LOC689725 ENSRNOG00000026195 ENSRNOT00000038369 1 1 1 80 9 32868211 32868230 ACTGATCCCATTCCTGAAGG 59 32866830 32868168 CTCCTCTTCACCACCTCTG 59 NA Rattus norvegicus 81 Lsm12 ENSRNOG00000020894 ENSRNOT00000028368 2 1 1 112 10 90110172 90125049 GTTAGTAAGCTTGCCAGCA 58 90110078 90110096 TGAATGGTCTGGAAGAGCT 58 NA Rattus norvegicus 81 RGD1562107 ENSRNOG00000024755 ENSRNOT00000038486 2 1 1 80 9 27311903 27311924 GCTTCATTACTTCAATGGAAGG 58 27311964 27316080 TCCTCCTCAAACTCTACTCC 58 NA Rattus norvegicus 81 Vat1 ENSRNOG00000020684 ENSRNOT00000028084 1 1 1 82 10 89368742 89370590 TTGTCACTTACGGAATGGC 58 89368678 89368696 GAACTGATTCCACCAGGTG 58 NA Rattus norvegicus 81 Pkdrej ENSRNOG00000029591 ENSRNOT00000041057 3 1 1 60 7 126696654 126696674 GGTGTATTATTCCTATGGCGT 58 126696614 126696636 GAAATAGAACTCATACCCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0862.1 ENSRNOG00000057028 ENSRNOT00000078328 3 1 1 60 10 86337186 86337206 TGCTGCTGGTTAGTAACTAGG 60 86337228 86337246 CTTGACCAGAAGGATCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 1 2 2 80 14 3232211 3232311 CCCATTGAGACACTGAGGA 59 3232355 3232373 TGTGTATTTGCCTTGGGAG 58 NA Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 3 2 2 80 14 3236054 3245978 AAGATGACAACCAAACTGGA 57 3246020 3246039 TAAGTCCTACATGAAGTGGC 57 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 2 2 2 82 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718826 143718845 TTCCGTTTGTTTGACTTTCC 57 NA Rattus norvegicus 81 Khdc1c ENSRNOG00000028595 ENSRNOT00000051403 3 1 1 80 9 27546611 27546747 GGAGGAATACATATTTGGCCC 59 27546789 27546807 CTTTCCAGCTGAATGAGGG 58 NA Rattus norvegicus 81 B3gnt7 ENSRNOG00000018267 ENSRNOT00000024578 2 1 1 202 9 93326405 93326423 AAGGGTTAACCTACCTGGG 58 93328008 93328028 GCATACACTCTTGTAGAGGGT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sapcd1 ENSRNOG00000000858 ENSRNOT00000080415 3 1 1 61 20 5019705 5019945 AACTTCTTCCTCTGGCCAG 59 5019662 5019681 ACAGAGCATCTTGTTCCCTC 60 NA DesignRelaxed Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 3 2 2 90 13 87992078 88000938 GAGCAACTACGGATTTGCC 59 88000991 88001010 GTAATTCTCACAGGCAACCC 59 NA Rattus norvegicus 81 Mir7b ENSRNOG00000049078 ENSRNOT00000071390 3 1 1 63 9 10812501 10812522 AATGCTATGTGGAAGACTTGTG 59 10812459 10812477 CTGGCTGTGACTTGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufa13 ENSRNOG00000021688 ENSRNOT00000029783 2 1 1 60 7 36826681 36826701 TCTATGTTCCATACCACACGA 59 36826723 36826741 TGCGTAACCCATAAAGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aktip ENSRNOG00000011956 ENSRNOT00000060865 2 1 1 80 19 17294340 17294358 CAGTCAACAAATGGCACCC 60 17294399 17297051 CACTACCATTGTGAATTCTGCA 59 NA Rattus norvegicus 81 Ctdnep1 ENSRNOG00000017352 ENSRNOT00000023379 1 1 1 80 10 56594638 56598220 GGATTTCTTCTTAGAAGTGGTAAGC 60 56598256 56598276 ACAGCAGAGCCATAAATTTCC 59 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 1 2 2 87 4 170163144 170164059 TGAAATGGAGTTTAACCCAGTG 59 170163078 170163096 TTCAAAGGTTTCTCGCAGC 59 NA Rattus norvegicus 81 Grk5 ENSRNOG00000011439 ENSRNOT00000015687 2 1 1 80 1 282438805 282438824 CTCCCAGACAGAGAAGAAGC 60 282438864 282439516 AAGTAGTCATGGACAGACTGAG 59 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000006764,ENSRNOT00000032941 3 2 2 80 10 92231478 92231700 CCATTCAGTACAGGAAGGC 58 92231742 92231762 TGACGAAGAACAACATGTAGG 58 NA Rattus norvegicus 81 Zc3h8 ENSRNOG00000017647 ENSRNOT00000023845 2 1 1 80 3 121485530 121485548 AAGTTGAAGAGGCACAGAC 58 121480332 121485487 GGTGCTTAAACTTCTTGGGA 58 NA Rattus norvegicus 81 RGD1563613 ENSRNOG00000029737 ENSRNOT00000044779 3 1 1 60 6 57396243 57396263 GAAGAAGGATGCTGGAAAGTC 59 57396280 57396303 GCCACCAGATTTATTTATAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps10 ENSRNOG00000052141 ENSRNOT00000043250 2 1 1 60 6 75429914 75429935 TGCTTGGAGACATTTCTATTGG 59 75429955 75429974 GTAATCTCGGAGGTACTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhm1 ENSRNOG00000028521 ENSRNOT00000037147 2 1 1 80 10 91486231 91486249 AAGCACACTCATCAGAAGC 58 91484598 91486190 TGAGATAATGTGTTTGTGGGTG 59 NA Rattus norvegicus 81 Elp6 ENSRNOG00000020847 ENSRNOT00000028288 1 1 1 81 8 118535860 118539825 CGAACTGAAGGGAAATGTGG 59 118539864 118539887 GCCATTCAGTAGGATGTTATTCTC 60 NA Rattus norvegicus 81 Sgk3 ENSRNOG00000049052 ENSRNOT00000072210 2 1 1 80 5 9080505 9086291 GAGCTTTACAACCATCCAGAC 59 9080445 9080466 CTCATCTTCAGATGGATCTGAC 58 NA Rattus norvegicus 81 Triml1 ENSRNOG00000014502 ENSRNOT00000019474 3 1 1 80 16 52170300 52171960 TGTGTAAGGAGGAGACAAAGAC 60 52172000 52172019 CCTCTTCCTTCAGGAACTGG 60 NA Rattus norvegicus 81 Col19a1 ENSRNOG00000012759 ENSRNOT00000017169 1 1 1 80 9 30718420 30727563 TGGACAAGATGGTTTGAAAGG 59 30716523 30716541 CCTGGAGGTCCCATATCAC 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 3 3 3 80 1 87004747 87005048 GATGAATGTCTGTGTCTCCA 57 87005090 87005109 TTGTAACTGCAAGATCCGTC 58 NA Rattus norvegicus 81 Cep57 ENSRNOG00000006792 ENSRNOT00000009318 1 1 1 80 8 12337671 12338376 GCAAATGAGCTTTGACCAC 58 12337609 12337628 CACTCCAGGTTGTCTTTCAG 59 NA Rattus norvegicus 81 Acsl5 ENSRNOG00000016265 ENSRNOT00000022126 2 1 1 80 1 276275045 276275064 ATGATGACCTGATGAAACGA 57 276275105 276275875 TCTCTTTGCCTAGATTCTCAG 57 NA Rattus norvegicus 81 Mfsd10 ENSRNOG00000012534 ENSRNOT00000017386 2 1 1 80 14 81365327 81365345 GGACTGATGCTCTACTCCT 58 81365472 81365564 TCCTGGAGAACCATAGCTG 59 NA Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 1 2 2 80 12 45100398 45103039 GGACTCCTTACTGGATGGC 60 45100336 45100356 GTGACCAGATGTCAACTTTCC 59 NA Rattus norvegicus 81 Shank3 ENSRNOG00000052296 ENSRNOT00000085191 3 1 1 80 7 130478549 130478965 CCCTCTATAACCAGGAGAGC 59 130479008 130479026 TCTGGCTGTTGTAATTGCG 59 NA Rattus norvegicus 81 Cbwd1 ENSRNOG00000015516 ENSRNOT00000021185 1 1 1 80 1 242856203 242858241 ATGAATTTGGAGAAGGGAGTG 58 242856143 242856164 GTTCCAGCCATTCTTCATAGAG 59 NA Rattus norvegicus 81 Slco1a6 ENSRNOG00000030894 ENSRNOT00000048367 3 1 1 80 4 176376325 176376344 CATTGGATGTGCAGTCATGG 60 176371922 176376284 GTTTCATATTCGTATCGGCCC 59 NA Rattus norvegicus 81 Tpcn1 ENSRNOG00000059344 ENSRNOT00000083890 2 1 1 80 12 41560169 41560187 GCAATAAGACCAAGGTGGA 57 41560230 41560809 CAAACAAGGTCACAAAGCTG 58 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 1 2 2 60 7 15071213 15072638 ACTAAGTAGTCAGTTGTTGGAG 58 15071174 15071192 TTCTGCACACTGATGACCT 59 NA DesignNoJunction Rattus norvegicus 81 Mgat2 ENSRNOG00000004234 ENSRNOT00000005608 2 1 1 60 6 91477951 91477970 GGAAATTGAAGCAGCAGGAG 60 91477993 91478011 GTGGTGTAGGTCCCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir423 ENSRNOG00000035537 ENSRNOT00000053660 3 1 1 83 10 63098363 63098381 AAGGAAGTTAGGCTGAGGG 59 63098427 63098446 TTAGGAAGCAAGACTGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 1 2 2 80 8 40007634 40007652 TGATAGCTGGTCTGGTCCT 60 40007694 40007959 TGGCATCTTCCTTGATATCGT 59 NA Rattus norvegicus 81 Duoxa2 ENSRNOG00000017805 ENSRNOT00000024201 1 1 1 80 3 114237879 114238269 AAATTGTGGCTGTACACTTCAG 60 114238308 114238328 AGGTACTGAAGGCTTTGTAGG 60 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750,ENSRNOT00000047843 2 2 2 80 11 31996776 31996796 GAGAGGCTAAAGCAGAAAGAG 59 31996838 31999397 CTGAACTCGTCTCTGACCT 59 NA Rattus norvegicus 81 Timp3 ENSRNOG00000004303 ENSRNOT00000005746 2 1 1 80 7 23548528 23553799 CAAATGAAGATGTACCGAGGA 58 23548468 23548486 GCCACAGAGACTTTCAGAG 58 NA Rattus norvegicus 81 Fam193a ENSRNOG00000013832 ENSRNOT00000018616 1 1 1 80 14 81568519 81568539 AAGAGTTGCGTAAAGTTGCTG 60 81564849 81568479 TCATTGTCATCTGCTCATCCA 60 NA Rattus norvegicus 81 Prok1 ENSRNOG00000018201 ENSRNOT00000024519 3 1 1 130 2 209990857 209990875 GAACGAGATGTCCAGTGTG 58 209988101 209990763 AAGAAAGGGATCTTGTGGC 58 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355 3 1 2 90 3 143804040 143804060 CAGCTACAAGATGACCAATGC 60 143803890 143803991 ACAATCCATGAATCTTCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem101 ENSRNOG00000054581 ENSRNOT00000081539 1 1 1 80 10 90095475 90095493 CTCCAGCTAGCCATTAGCA 59 90094415 90095433 ATACATACGGACCTTTAGCCA 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 2 2 2 81 9 38480069 38490828 CTACTATCGAGGAGCCCAG 59 38480006 38480024 TCTCCAGCTGGAAATTGCT 59 NA Rattus norvegicus 81 Pip ENSRNOG00000016076 ENSRNOT00000021576 1 1 1 84 4 71320888 71320906 CATTCACATCCACTGCTGC 60 71320950 71322852 GGAATAGTTTCATTATCCTGGCC 59 NA Rattus norvegicus 81 Tjp2 ENSRNOG00000015030 ENSRNOT00000065921 3 1 1 80 1 241963480 241964325 CGAGCAGACGTGTATAGAG 57 241963418 241963437 CTTCTCACATTCAAAGTGGC 57 NA Rattus norvegicus 81 Slc16a4 ENSRNOG00000018131 ENSRNOT00000024455 1 1 1 80 2 210053580 210055707 CTTTATGACTGGACAGGTGC 59 210055750 210055768 AGGTCTTAGGAGCATGCTG 59 NA Rattus norvegicus 81 Sprr4 ENSRNOG00000042266 ENSRNOT00000066614 2 1 1 60 2 192697699 192697720 ACCTCCTACCAAATGTCAAGAG 60 192697660 192697679 CTGAGGAACACATGGATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073 2 1 2 84 1 99532572 99532590 CCGCTGACGTGAATTTCTG 60 99532637 99533741 TCAAAGGACACCAACCTCTC 60 NA Rattus norvegicus 81 Ankmy1 ENSRNOG00000048567 ENSRNOT00000071359 1 1 1 80 9 100039610 100039628 AAGTACTGCAAGACCAAGG 57 100038876 100039568 ATCCAAGTGGGATATCATAGC 57 NA Rattus norvegicus 81 AABR07011278.1 ENSRNOG00000046074 ENSRNOT00000075563 3 1 1 81 2 160291876 160291894 AAACTACTGGCTGACCAGG 59 160292212 160292230 TGGTGGGTACTTGTTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 2 2 2 81 7 15247727 15248595 AAGGAAGCCTGAGAACTCTG 60 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000018854 1 1 2 85 16 23972369 23984541 CTTGTGCAATTGACTGGGAG 60 23972303 23972325 CCAAGTCCAACTTATTCACTGAG 60 NA InUTR Rattus norvegicus 81 Zfp212 ENSRNOG00000006711 ENSRNOT00000009054 2 1 1 104 4 77598709 77598727 CTCAGAACAGGAGTGGGAG 59 77598795 77600596 TGGCCAAGGACCTTTAGAG 59 NA Rattus norvegicus 81 Kif1a ENSRNOG00000023993 ENSRNOT00000036061 3 1 1 80 9 100208729 100208749 CCTACAGAAACAGATGGACTC 58 100207927 100208688 GTCCATTGGACTTCATCCTC 58 NA Rattus norvegicus 81 Crim1 ENSRNOG00000004208 ENSRNOT00000005983 1 1 1 80 6 956478 958964 ACCTCCCTAGAGATATGGGT 59 959004 959025 CCAATGATGAGTCTTCACTTGG 59 NA Rattus norvegicus 81 Sox10 ENSRNOG00000011305 ENSRNOT00000015283 2 1 1 84 7 120401467 120401486 AAAGTTAGCCGACCAGTACC 60 120397380 120401420 ACTCTCGTTCAGCAACCTC 60 NA Rattus norvegicus 81 RGD1306954 ENSRNOG00000021399 ENSRNOT00000030279 1 1 1 80 11 31099426 31103253 GCTCTGCACAGAGATAGAGG 60 31099365 31099383 ATCTGCTCGTCAGTCAGTC 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 2 3 3 80 3 134293428 134293448 TTATCTAGCCGAGATGTACGC 60 134292328 134293390 CAGACTCCTTTATAAAGCTCCAC 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 3 2 2 80 8 21518762 21518782 TCATTCCTAGTCTGACTCCCT 60 21517639 21518720 GCAGTTCCAATTGCTGAGG 60 NA Rattus norvegicus 81 Gucy2d ENSRNOG00000007931 ENSRNOT00000010790 1 1 1 80 10 55838473 55838492 TCGACCTGCTTAATGACCTC 60 55838026 55838436 CTCCAATTGTTTCCACCTTATAGAC 60 NA Rattus norvegicus 81 LOC688462 ENSRNOG00000029317 ENSRNOT00000051194 2 1 1 60 19 34616872 34616890 TGTCAAGGCCAAGATCCAG 60 34616914 34616932 AAAGACCAACCTCTGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc16 ENSRNOG00000039931 ENSRNOT00000061339 1 1 1 80 8 18459024 18459042 ACACTGAATGCTTCCTCCT 59 18457640 18458985 GATGGATGTCTTCATGTCTATCAC 59 NA Rattus norvegicus 81 Ttll4 ENSRNOG00000017129 ENSRNOT00000023067 2 1 1 80 9 81943038 81943416 GAATGAAGAAGAGGAAGGAGAC 58 81943455 81943475 CGAGATATTATTGCCACCGAC 59 NA Rattus norvegicus 81 Wif1 ENSRNOG00000004476 ENSRNOT00000006426 2 1 1 80 7 63139714 63139732 TAAAGGCATCATGGCAGAC 58 63139775 63146193 CCAACTTGAACAACTGATGC 58 NA Rattus norvegicus 81 Wif1 ENSRNOG00000004476 ENSRNOT00000006426 3 1 1 80 7 63095917 63095935 AAAGAATGCCAGCCATTCC 59 63095978 63139688 CATAGAAGTACTCTGCCTGC 58 NA Rattus norvegicus 81 Ankrd50 ENSRNOG00000010534 ENSRNOT00000045837 1 1 1 80 2 125297019 125302524 AAATGTTTACTGGGTTCCGG 59 125296958 125296977 GGATGTACTGCTGTACATCC 58 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104,ENSRNOT00000088208 3 2 2 80 8 59222465 59222483 CAAGTCATGGTCTCGAGCT 60 59209401 59222423 TTGTCCATAGTGCTTCCTCTG 60 NA Rattus norvegicus 81 Kcne1 ENSRNOG00000001984 ENSRNOT00000002717 3 1 1 60 11 32498606 32498624 TTTCTTCGGCTTCTTCACC 58 32498564 32498582 TTCCAGCTTCTTGGATCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam19a3 ENSRNOG00000030253 ENSRNOT00000040772 3 1 1 101 2 207254763 207255521 ATCCACAGTCCTAGTGAAGC 59 207254681 207254699 GAGCATTTGACCGTTTGGG 60 NA Rattus norvegicus 81 Cyb5r4 ENSRNOG00000010024 ENSRNOT00000013908 3 1 1 80 8 94745235 94745556 TGTCCAGTCTCAGGAAGGT 60 94745598 94745618 ATTTCTCTAGCTGGCATCTCC 60 NA Rattus norvegicus 81 Olr205 ENSRNOG00000045596 ENSRNOT00000047222 1 1 1 60 2 4820751 4820769 ATTGTGGTTGGGATGTGGT 60 4820793 4820811 GGAATTGACTGGGAAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcaf1 ENSRNOG00000017911 ENSRNOT00000024428 2 1 1 80 4 72126235 72126256 CGAATGTATTTAAGCAAGGGAC 58 72124682 72126195 CTCTTGAAGCTGTAGGTACG 58 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187,ENSRNOT00000049624 1 2 2 80 19 22179540 22179561 AGCATTAATCTTCCAAGACCTG 59 22177126 22179502 CATCGTTGACTTGACAATTCTG 58 NA Rattus norvegicus 81 Usf1 ENSRNOG00000004255 ENSRNOT00000005811 1 1 1 80 13 89804254 89804274 CAACTGGATTGTACAGCTGTC 59 89804316 89804558 ATTCCACCCTTACTCTGGC 59 NA Rattus norvegicus 81 Mettl2b ENSRNOG00000006131 ENSRNOT00000008140 1 1 1 80 10 93360489 93360975 TGTTCCAGACAAGATGCAG 58 93361018 93361037 TAGTCTCGAAGAAGCATCAC 57 NA Rattus norvegicus 81 Prkg2 ENSRNOG00000002361 ENSRNOT00000003237 2 1 1 80 14 12269702 12269720 GATGATGTCAGATCGGCCA 60 12269762 12272192 TTGGTTGAATGTTTCTCGGTC 59 NA Rattus norvegicus 81 Lats1 ENSRNOG00000014916 ENSRNOT00000020098 1 1 1 80 1 1811800 1811818 AGCGATGTCTAGCTCACTC 59 1811861 1812081 GCTGTGTATATCCTGTCCGT 59 NA Rattus norvegicus 81 LOC680913 ENSRNOG00000024182 ENSRNOT00000032408 3 1 1 80 19 20503834 20504422 CTTCAACAAGAGCTTCCTACG 59 20503774 20503792 CCCTTCGTGTCAGTTTCAC 59 NA Rattus norvegicus 81 Zfp414 ENSRNOG00000008378 ENSRNOT00000011094 1 1 1 82 7 18499383 18499845 TACTTCAAGTGTGAGAATTGCC 59 18499884 18499906 CCATGGTCTATACAAACATGCAG 60 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000020681,ENSRNOT00000086340 2 2 2 95 9 113313400 113313418 TCAAAGTGAAGACCACAGC 58 113312654 113313342 GCAGCATTACTGAGACAGTC 59 NA Rattus norvegicus 81 Bfsp1 ENSRNOG00000005707 ENSRNOT00000007727 3 1 1 92 3 137937932 137939442 TTGAAGGCAACAGGTTGAG 58 137937858 137937876 CATTGGATCCAAGGCTGAG 58 NA Rattus norvegicus 81 Klhdc9 ENSRNOG00000004022 ENSRNOT00000005352 3 1 1 91 13 89743549 89744402 TATGATACCCGCAAGTCTCC 59 89743477 89743495 TTCCAAAGGCAAGTACGGT 60 NA Rattus norvegicus 81 Coa5 ENSRNOG00000018102 ENSRNOT00000024366 1 1 1 97 9 44024758 44024776 TTATGAGGACAAGCCGGAG 59 44023270 44024697 ACTTTCCTTCCTGGAGCAC 60 NA Rattus norvegicus 81 Siah1 ENSRNOG00000015143 ENSRNOT00000020329 3 1 1 60 19 21394107 21394125 ATTCGCAACTTGGCTATGG 59 21394146 21394167 AGGCATATTTACAAGGGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmt1 ENSRNOG00000013373 ENSRNOT00000017860 1 1 1 86 1 218374044 218374063 CATACACTGCAAAGTGGGAG 59 218373849 218373995 AGAGCCTTTCTGTGTCCAC 60 NA InUTR Rattus norvegicus 81 RGD1309049 ENSRNOG00000014123 ENSRNOT00000018896 3 1 1 60 9 29337720 29337740 GTGAAGTATAACCGCAAGGAG 59 29337680 29337699 GTTCTAAGATCCACTCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gltp ENSRNOG00000001192 ENSRNOT00000001581 1 1 1 93 12 47667715 47681128 CTTCTTCGATTGCCTTGGG 59 47682853 47682871 GTCAGTGTCATAGACGGCT 59 NA Rattus norvegicus 81 Ooep ENSRNOG00000025957 ENSRNOT00000071049 1 1 1 80 8 85719874 85720177 CGAAGTCCAAAGAGCTGTG 59 85719812 85719832 GACGCTTGGGTTATGATTGAG 60 NA Rattus norvegicus 81 Lmx1a ENSRNOG00000004642 ENSRNOT00000006163 2 1 1 81 13 85920905 86017083 CAAGTACCACTACGAGAAACTG 59 86017124 86017143 ACGCATGACAAACTCATTGG 60 NA Rattus norvegicus 81 Naip6 ENSRNOG00000033693 ENSRNOT00000072926 1 1 1 80 2 30396627 30396645 AAACCCTGAAGTCCTCTGC 60 30393159 30396583 CACTTGTGGTTTCCATGGC 60 NA Rattus norvegicus 81 Fam189a1 ENSRNOG00000023496 ENSRNOT00000031488 2 1 1 88 1 125580818 125580837 ATGTCCTCTCCACCATTGTG 60 125570842 125580767 AGGGAAGAACATCTGCAGG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 1 2 3 112 11 36762882 36770741 GGAAATCTGCAAATGTGAGGA 59 36770815 36773593 AGAAGCAATTTGTGCAGCC 60 NA Rattus norvegicus 81 RGD1561281 ENSRNOG00000061130 ENSRNOT00000089610 2 1 1 137 10 87541762 87541780 GATCCTTCTCCTCCCAGAG 58 87541643 87541661 AGATGGGCCTAGTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dram2 ENSRNOG00000017744 ENSRNOT00000023903 2 1 1 80 2 209185518 209185539 TTCACAGCAAACAAGTCTTCTG 60 209185578 209186359 AGCAAGTCATCATGCTAAGTG 59 NA Rattus norvegicus 81 Parg ENSRNOG00000019978 ENSRNOT00000027071 3 1 1 80 16 8433873 8433894 ATTGATGCACTTCACTTCAGAC 59 8433933 8444464 ACAGTAAGCCTTGTTAAGCTC 58 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 1 2 2 80 7 91863646 91863664 TATCTCTTCCGTCTTGGCT 58 91863707 91865641 TTTGGAACACCTTCCATGAG 58 NA Rattus norvegicus 81 Sohlh2 ENSRNOG00000038091 ENSRNOT00000044424 2 1 1 80 2 144601940 144601960 GAATGCAGACTCTACTTCCAG 58 144602000 144604829 CAGTTCAGAGCAAAGAAACAG 58 NA Rattus norvegicus 81 LOC100910928 ENSRNOG00000008499 ENSRNOT00000011225 2 1 1 60 7 9280227 9280246 TGACACTCCTGGTTACACTG 59 9280268 9280287 ATGGTCCTGATGATGTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 1 3 3 80 14 6522312 6526842 CTCAATCCTGAGAAGGATGTC 58 6522252 6522273 AATCTGAAGATGGAGTACTGAG 57 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124,ENSRNOT00000016740 3 2 2 80 1 244686254 244686274 CACTCATCACGTATCTGATGG 58 244686315 244688203 AGTTAGACAGAGTCGAGAGG 58 NA Rattus norvegicus 81 LOC100912866 ENSRNOG00000029597 ENSRNOT00000043327 2 1 1 152 10 92784189 92787490 CAAGACTTGGAAGAGCTACC 58 92784056 92784074 GAAAGTCCTTGTCACCTGG 58 NA Rattus norvegicus 81 Serpine1 ENSRNOG00000001414 ENSRNOT00000001916 2 1 1 80 12 22643999 22644017 TGGACTTCTCAGAGATGGA 57 22644059 22645554 AGTCACTGATCATACCTTTGG 58 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502,ENSRNOT00000087274 2 5 5 80 X 159167283 159167301 TGCTTTGACAAGTTCTGCG 59 159167342 159168349 CTTATAGTGCACCTCCTTAGCA 60 NA Rattus norvegicus 81 Gldn ENSRNOG00000024082 ENSRNOT00000033900 1 1 1 80 8 58890413 58897756 ATCTGCCTTACAGGACCAC 59 58898112 58898132 CTGTCCATCTGATCCATTGTG 59 NA Rattus norvegicus 81 Olr67 ENSRNOG00000034083 ENSRNOT00000051894 3 1 1 60 1 168118192 168118213 ACAGTTCTCAGTATTGCATCTC 58 168118233 168118252 GGGAGACACAGGTATTTAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec23b ENSRNOG00000008411 ENSRNOT00000064723 2 1 1 80 3 138742688 138742710 GGACAGTATAACAAAGAAGACCC 59 138742748 138750768 CAGATGGAACATGAACTGAGG 59 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000006849 3 1 2 87 13 90391593 90401169 CATACTCTACAGGGAGCTGTC 60 90391526 90391544 AGTCAACTGTCACCCTGAG 59 NA InUTR Rattus norvegicus 81 LOC682512 ENSRNOG00000036588 ENSRNOT00000045446 2 1 1 60 1 264706175 264706194 CACATCAAGCAGTCGAAGAG 59 264706134 264706153 TCTGATCGTTCTCCTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dfnb59 ENSRNOG00000038165 ENSRNOT00000058093 3 1 1 81 3 63510439 63510458 CAAATTCACATCCACACCCT 59 63510499 63511327 CTGATAAGATGAAATACCGGCT 58 NA Rattus norvegicus 81 LOC680236 ENSRNOG00000048486 ENSRNOT00000071886 3 1 1 82 X 22791130 22791148 TGGAGGCAAAGAGGTTCTG 60 22791192 22791760 CTCAAATGAGACAGGATGCTG 59 NA Rattus norvegicus 81 Krt19 ENSRNOG00000014233 ENSRNOT00000019133 2 1 1 80 10 88057479 88057501 AGAACTCCAAGATAGTCCTACAG 59 88057208 88057441 CCTGTTCTGTCTCAAACTTGG 59 NA Rattus norvegicus 81 Lypd6b ENSRNOG00000004614 ENSRNOT00000065989 3 1 1 104 3 35429247 35429268 CATTCCCAAACAGTTTCAAGTG 59 35429333 35434181 AATACTGTGTTTCCTGCGG 58 NA Rattus norvegicus 81 Atp1a2 ENSRNOG00000007290 ENSRNOT00000058143 1 1 1 80 13 90659603 90663390 GGCATCAAGGTGATCATGG 59 90659541 90659560 CTCTGATATGATGCCCACAC 58 NA Rattus norvegicus 81 Psma4 ENSRNOG00000013493 ENSRNOT00000018173 2 1 1 80 8 59534581 59536450 TAAACTTAACGAGGACATGGC 59 59536490 59536510 ATGAGCCTGAGTTCATTAGTC 58 NA Rattus norvegicus 81 Mtdh ENSRNOG00000006870 ENSRNOT00000009989 2 1 1 80 7 72823486 72823504 AAGCTTGTTCCCTGAAGAC 58 72823547 72826851 GAAGAGTCTTGATAGGCTGG 58 NA Rattus norvegicus 81 Sit1 ENSRNOG00000021546 ENSRNOT00000035040 1 1 1 104 5 58986844 58986985 TTTACAGACAGGACGGCTG 60 58986667 58986685 AGACTCGTGTAACACGTGG 60 NA Rattus norvegicus 81 Isg20 ENSRNOG00000054561 ENSRNOT00000091588 3 1 1 86 1 140602743 140602761 TACAGAACCCAAGTCAGCG 60 140602811 140604715 AAGCTGCAGGATCTCTAGC 59 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339,ENSRNOT00000051425,ENSRNOT00000066896,ENSRNOT00000063918 3 5 5 80 1 215676241 215678552 AAGACCCAAACTTACTGCTC 58 215679174 215679193 TTGTTCTGACGCTTCTTCTG 59 NA Rattus norvegicus 81 Cpxm1 ENSRNOG00000021220 ENSRNOT00000028818 3 1 1 80 3 122919110 122919258 CGGCTCAATATCCAGTCAG 58 122919048 122919068 AGGCTCATTATCTTGTTGCTC 59 NA Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000086962 2 1 2 82 5 62151189 62151207 GTTTGGCCACCAAGAAGAG 59 62141315 62151143 GTCTGCAGAAACCTTGAGC 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 1 1 2 80 19 19777431 19779368 CAACAAGTCACAGCATGGA 58 19771878 19771896 TTGCTTAACACTGAAGGCA 58 NA Rattus norvegicus 81 Glb1 ENSRNOG00000010196 ENSRNOT00000013632 1 1 1 80 8 122458543 122460623 CGACCCAGATTACCTTGCA 60 122460667 122460685 CCGTTCTGGTAGAGCAGAC 60 NA Rattus norvegicus 81 Arhgef26 ENSRNOG00000014549 ENSRNOT00000019553 2 1 1 80 2 27181915 27184131 AGAAGTTGTTAACAACCAACCC 59 27184171 27184190 TAGGTAAGTTCCTGCAGTCC 59 NA Rattus norvegicus 81 Lrrc8c ENSRNOG00000002122 ENSRNOT00000002896 2 1 1 105 14 5290025 5315876 GGATGTACTTTACAAGTCATGC 58 5289941 5289959 TGATCACAGTCTGGGAGAC 58 NA Rattus norvegicus 81 Cstl1 ENSRNOG00000004779 ENSRNOT00000006362 1 1 1 80 3 143085249 143085268 AGTCTTACAACAACGCAAGC 60 143085311 143088784 CTGTGGTCAACTGCATCTG 59 NA Rattus norvegicus 81 Mnda ENSRNOG00000003486 ENSRNOT00000036040 1 1 1 80 13 92079181 92082669 TTGGCTAAGTGTTCAATGGA 58 92079120 92079138 TTCTGTTTGGAGAACAGCG 58 NA Rattus norvegicus 81 Aadacl2 ENSRNOG00000050858 ENSRNOT00000073078 2 1 1 80 2 150106361 150106381 CCTGACAACATTGAAGAACCT 59 150106423 150109955 AAGACACAGAGCCGTAAGG 59 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343,ENSRNOT00000067996 2 2 2 80 8 96514707 96514727 GCACCTGAACATACAACTGTC 60 96513801 96514669 TCTTCTATGATCCACCTTCACTG 60 NA Rattus norvegicus 81 LOC691033 ENSRNOG00000042535 ENSRNOT00000057619 1 1 1 80 2 155089046 155093467 GCATACTGTGACACTCCTC 58 155093511 155093529 CATTGGCAGTAACTTGCTG 57 NA Rattus norvegicus 81 Inhbb ENSRNOG00000060237 ENSRNOT00000086350 2 1 1 83 13 35439198 35441788 CTTTGCAGAGACAGATGGC 59 35439133 35439152 ACAAATAGGTTCTGGTTGCC 59 NA Rattus norvegicus 81 Ybx2 ENSRNOG00000017117 ENSRNOT00000023003 1 1 1 81 10 56551423 56551441 AAACCGTCCCTACTTCCAG 59 56551486 56551795 GATAGGTGCTGAGGTCTCC 59 NA Rattus norvegicus 81 LOC684270 ENSRNOG00000050348 ENSRNOT00000071971 2 1 1 80 1 72492016 72495064 CCCAGTTCAAGGAGATTCAG 58 72491955 72491975 GGTTCTGACCTTGGAATAGAC 58 NA Rattus norvegicus 81 Frrs1l ENSRNOG00000043103 ENSRNOT00000031432 1 1 1 85 5 74013775 74029011 GTCAGAGGAGGGATACCCT 60 74013708 74013726 CCTTAGTCCTTCCGCAGTC 60 NA Rattus norvegicus 81 LOC100910402 ENSRNOG00000053897 ENSRNOT00000079287 2 1 1 60 2 35210415 35210434 AACACCCATGTACTTCTTCC 58 35210374 35210392 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psrc1 ENSRNOG00000020013 ENSRNOT00000055880 2 1 1 80 2 211178194 211179161 CCTCCAGTATAAAGAAGGAATCAC 59 211179200 211179218 GTTGTGCAAGAGGAGAACG 59 NA Rattus norvegicus 81 Olr77 ENSRNOG00000045576 ENSRNOT00000049645 1 1 1 60 1 168224397 168224415 TTGTCTTTATGCCACTGCC 59 168224436 168224457 CTGGGTCACAATGATAAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmod3 ENSRNOG00000032436 ENSRNOT00000013852 2 1 1 81 8 82445345 82446547 ACCTTGCAGCAATTCTTGG 59 82445282 82445301 TCGTCACCGTTACTACTTCC 59 NA Rattus norvegicus 81 Psd4 ENSRNOG00000006079 ENSRNOT00000008161 3 1 1 80 3 1509742 1510791 TGATGGCAAGAAGACACCA 59 1510835 1510853 AGGAAGTAGAGCACCATCC 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 3 3 3 83 12 46801169 46801917 CCATCTTGGATAAAGTGGTGAC 59 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 LOC100912338 ENSRNOG00000045753 ENSRNOT00000046129 1 1 1 60 2 198361195 198361214 TGTCAATGACATCTTCGAGC 58 198361237 198361255 CTTGTTGTAATGCGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmtm7 ENSRNOG00000010986 ENSRNOT00000014861 2 1 1 91 8 122820619 122820638 TATTTAATCGGCACCCTGCT 60 122816441 122820565 AGGAACCCAAAGATCGCTC 60 NA Rattus norvegicus 81 RGD1562310 ENSRNOG00000001123 ENSRNOT00000001485 2 1 1 92 12 43924494 43924512 TACTGCTGTAATGGGTGCC 60 43924124 43924438 CAGGAGAAGTTGCTTGCTG 59 NA Rattus norvegicus 81 RGD1562310 ENSRNOG00000001123 ENSRNOT00000001485 3 1 1 93 12 43924495 43924513 GTACTGCTGTAATGGGTGC 59 43924124 43924438 CAGGAGAAGTTGCTTGCTG 59 NA Rattus norvegicus 81 Ppwd1 ENSRNOG00000012505 ENSRNOT00000016863 1 1 1 80 2 34295009 34295027 AAACGAGTTTCCGACAGTG 58 34293100 34294965 CTTGGGACACTCAACAGGA 59 NA Rattus norvegicus 81 Erbb3 ENSRNOG00000004964 ENSRNOT00000006796 1 1 1 80 7 3000296 3000315 CATAAGATACCCGCACTGGA 59 2999834 3000256 CTGGATGTTTAGGTAACCTGTG 59 NA Rattus norvegicus 81 Zcchc16 ENSRNOG00000031638 ENSRNOT00000050854 1 1 1 60 X 116400312 116400332 TTGTAGCCAGTCCTTTCTCAG 60 116400353 116400372 CATTGGTTTAAGCCCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cckar ENSRNOG00000043124 ENSRNOT00000065366 2 1 1 81 14 59616060 59616079 AAATAATAACCAGACGGCGA 57 59616123 59618183 TAGCAGGAATGTTTGCCAG 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687,ENSRNOT00000075057 3 2 2 80 2 31750499 31750519 CCTTAGCTCAGTACAATCCCA 59 31750221 31750459 CTTTGACAACTTGATCCTGCT 59 NA Rattus norvegicus 81 Rdh8 ENSRNOG00000025767 ENSRNOT00000032076 3 1 1 80 8 21839630 21840189 GACATACTGGTGAACAACGC 60 21840231 21840250 GAACACATTCTGCATGGTGG 60 NA Rattus norvegicus 81 Lgi4 ENSRNOG00000021087 ENSRNOT00000028632 3 1 1 80 1 89495625 89495836 ACTCTGACTCATGTGGACC 59 89495880 89495898 CATAGGCATCCACTGTAGC 58 NA Rattus norvegicus 81 Rnf122 ENSRNOG00000023473 ENSRNOT00000031701 2 1 1 80 16 64771798 64778114 CTGCTACTTCATCAGCAAACTC 60 64771482 64771501 GCATCACCTTTAAGCACCAC 60 NA Rattus norvegicus 81 Tcn2 ENSRNOG00000004280 ENSRNOT00000005934 1 1 1 80 14 84181194 84181212 GAGAAGATCCTGAAGGCCC 60 84181022 84181152 CATTAGCATCTGTAGTGCCAG 59 NA Rattus norvegicus 81 Sez6l ENSRNOG00000025612 ENSRNOT00000032193 2 1 1 80 12 50199100 50199118 ATATCCGCATCGAGTTCAC 58 50199162 50200428 GACCTTTCTCAAAGGCCTC 58 NA Rattus norvegicus 81 Fat4 ENSRNOG00000028335 ENSRNOT00000038703 3 1 1 80 2 125843111 125844903 TCCTACTCCTCCAGGTTCC 60 125844943 125844965 GAGTAATGGAGTTCAGAATTGGG 59 NA Rattus norvegicus 81 Ntng1 ENSRNOG00000031136 ENSRNOT00000066218 1 1 1 80 2 212771561 212792206 ACCGCTAACACCTGTATCC 59 212751667 212751688 GATATAACTGCACCGATTGGAG 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075894 2 4 5 85 10 89176900 89177706 TTTATCAATGGGTTTCCAGGAG 59 89177752 89177770 TTCCTCCTCTGTGTCTTCC 58 NA Rattus norvegicus 81 Ftl1l1 ENSRNOG00000034150 ENSRNOT00000049856 3 1 1 60 X 139475808 139475826 TGACTTCTTGGAAAGCCAC 58 139475766 139475786 GTTGCCCATCTTCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sigirr ENSRNOG00000015593 ENSRNOT00000054874 1 1 1 80 1 213899960 213900214 GGAGGTAGAGATGAATGATGG 58 213899900 213899919 TTTACAAATTTGCGGTCCTC 57 NA Rattus norvegicus 81 Sigirr ENSRNOG00000015593 ENSRNOT00000054874 2 1 1 80 1 213900243 213900263 ATGTTAAGTGTCGTCTGAACG 59 213899949 213900207 CGTATAACTTCCCATCATTCATCTC 60 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945,ENSRNOT00000056170 2 2 2 80 5 150880432 150881777 TCAAACCAGGACTATCCCAC 59 150881820 150881838 GACTCCAAAGCTGGAACTG 59 NA Rattus norvegicus 81 Pidd1 ENSRNOG00000049179 ENSRNOT00000072774 3 1 1 80 1 213984943 213984961 GACCTCATGACTTCCTGCT 59 213984804 213984900 GCCATAAGCTCACATTCTGC 60 NA Rattus norvegicus 81 Ndufv1 ENSRNOG00000018117 ENSRNOT00000024517 2 1 1 80 1 219256302 219256598 CCTCCAATTTGCAGGTAGC 59 219256240 219256261 AATCATAATCAGAGTCACAGGC 58 NA Rattus norvegicus 81 Hfm1 ENSRNOG00000023299 ENSRNOT00000033794 1 1 1 80 14 3905872 3908133 GCAGAAACTACGGTTGCAG 60 3908322 3908340 TAACCAACACCGTACACCA 59 NA Rattus norvegicus 81 Scg3 ENSRNOG00000010784 ENSRNOT00000014491 1 1 1 80 8 82641199 82641217 GATACTGGTGTTGGTGCTC 58 82640555 82641157 TTATGCAGGGATTTGTCTTGG 59 NA Rattus norvegicus 81 Prpf38b ENSRNOG00000020438 ENSRNOT00000027738 3 1 1 80 2 211708585 211708604 AGAAAGACGGAAAGGAAGGT 59 211708159 211708546 TCAGTGATCTTCTTGGAGATCTG 60 NA Rattus norvegicus 81 Mapk10 ENSRNOG00000002079 ENSRNOT00000065965 1 1 1 80 14 8316277 8319337 CACAATAAACTTAAAGCCAGCC 59 8319378 8319396 CACCGATATCCTCTTCGCT 59 NA Rattus norvegicus 81 Olr1107 ENSRNOG00000010787 ENSRNOT00000014316 1 1 1 60 7 140032256 140032274 ACCTGATGATGCTGTTGGT 59 140032296 140032316 AAGTAGTACATGGGAGTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd1d1 ENSRNOG00000016451 ENSRNOT00000022150 3 1 1 80 2 186333161 186333180 TTCAAGTGTATCGAACCAGC 58 186332826 186333123 CGATAGGATAGTCTTCTTTAGGTG 58 NA Rattus norvegicus 81 Irak3 ENSRNOG00000004226 ENSRNOT00000005686 3 1 1 80 7 64927610 64927715 ACATGTTCAGCTGAGGGAC 60 64927548 64927567 TTCCTGTCCAAGAACGAGAG 60 NA Rattus norvegicus 81 Fxr2 ENSRNOG00000011876 ENSRNOT00000016163 2 1 1 80 10 56246807 56246827 AAGAGTTCAAGAAAGCACTGG 59 56246866 56248823 CTGTGGTTGACAGAATGAAGAG 59 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767,ENSRNOT00000083702,ENSRNOT00000026482 2 3 3 82 1 40903940 40905587 CAGAATCCTAAGATGTTAGTTGCTC 60 40905626 40905645 AACAGCAGCATCTTGTTCTG 59 NA InUTR Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000080583 2 1 2 60 20 5241392 5241410 GACACAGAAATGGCTTGGA 58 5241350 5241370 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1471 ENSRNOG00000061453 ENSRNOT00000072328 1 1 1 80 10 60020294 60020312 CTATGATGTGCACAGTGGT 58 60020229 60020252 GTAGTGCCTCTTTCATGTCTC 59 NA Rattus norvegicus 81 LOC685789 ENSRNOG00000003531 ENSRNOT00000004683 2 1 1 84 X 22734740 22736745 ACACAAAGATTTGACAGTGGG 59 22736789 22736809 GTATTTCCAACACGAAAGCTG 58 NA Rattus norvegicus 81 Olr113 ENSRNOG00000015940 ENSRNOT00000021334 3 1 1 60 1 168703013 168703031 ACTTCTGGCTATCTGTCCC 59 168702971 168702990 ATGCAATTTCCCAGGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a1 ENSRNOG00000017775 ENSRNOT00000024165 2 1 1 80 14 82916094 82919944 AGAGTCAATGAACCGGGAG 59 82916032 82916052 GGCAAACTCAGTGATCATACG 60 NA Rattus norvegicus 81 AABR07055353.1 ENSRNOG00000047912 ENSRNOT00000073169 2 1 1 81 7 1720249 1720269 GAAGTGTAAATTCGAGAGGCA 59 1720312 1721485 GAGATCCAGCCTGTAGTCC 59 NA Rattus norvegicus 81 Rnf149 ENSRNOG00000013946 ENSRNOT00000018684 2 1 1 104 9 46299135 46299154 GCTCACAGTTTGGAAGTCAG 59 46294659 46298049 CATCAACATCGATTCCCTTCTC 59 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000048074 2 1 2 80 13 111947339 111948627 TTCATAGACACAGGGAGGC 59 111947277 111947295 AAGACCCTTGGACAACTGG 60 NA Rattus norvegicus 81 Rps29 ENSRNOG00000028939 ENSRNOT00000041384 1 1 1 60 13 91334125 91334143 AATACGGGCTGAACATGTG 58 91334167 91334185 ATGAAGCCTATGTCCTTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gast ENSRNOG00000014740 ENSRNOT00000019863 1 1 1 80 10 88248172 88248303 ACTTCATAGCAGATCTGTCCA 59 88248345 88248363 GACCAAAGTCCATCCATCC 58 NA Rattus norvegicus 81 Gast ENSRNOG00000014740 ENSRNOT00000019863 2 1 1 81 10 88248171 88248302 CACTTCATAGCAGATCTGTCC 58 88248345 88248363 GACCAAAGTCCATCCATCC 58 NA Rattus norvegicus 81 Hapln3 ENSRNOG00000022321 ENSRNOT00000032174 1 1 1 86 1 140835019 140835037 GACTTCCGTTCTACAACGG 58 140832019 140834970 CATTGAATAGGCCTTCTCCA 57 NA Rattus norvegicus 81 LOC100909792 ENSRNOG00000050466 ENSRNOT00000074681 1 1 1 60 2 168228511 168228533 GCTCCTGGCTTATTAACATACTC 59 168228551 168228571 GATTTGGCTACTACCATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 3 2 2 88 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616319 128616337 TCATGTTGAACACCTCCAG 57 NA Rattus norvegicus 81 Tmem194b ENSRNOG00000012924 ENSRNOT00000029204 2 1 1 82 9 53722206 53722230 GTACCGTGTTAGGTATTCTAATGAC 59 53721462 53722168 CCCAAATGTGCTATACTTCGG 59 NA Rattus norvegicus 81 Htra3 ENSRNOG00000008182 ENSRNOT00000010852 1 1 1 80 14 80264324 80264342 GTATCTCCTTTGCCATCCC 58 80264385 80273147 TCTTCCAGTCTTTCACATGC 58 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809,ENSRNOT00000080174 1 3 5 80 20 4810732 4812491 CTTGAACAGCTCGACATGC 60 4810670 4810689 ACTGAACATCATGACCTGCT 60 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938,ENSRNOT00000056562 1 2 2 158 8 98756839 98756857 GAAAGTTCATGGTCGCTCG 59 98756978 98759151 AAGCAACATCATTCGCTCAC 60 NA InUTR Rattus norvegicus 81 AABR07029989.1 ENSRNOG00000047607 ENSRNOT00000075322 1 1 1 80 10 62414336 62414358 CAACAACACATCTTCTTGCTC 58 62414398 62414418 ACTAATTGCCAGGACAATGAG 58 NA Rattus norvegicus 81 LOC100909818 ENSRNOG00000047479 ENSRNOT00000072996 1 1 1 60 1 169598567 169598586 GCTGTCTATGCCTGTTTCAC 59 169598526 169598547 CTGATTGTACTACTGAAGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 3 2 2 80 2 28798507 28798526 CCGAGATACCTCTGAAATCG 58 28794474 28798465 ATTATCACTGAGTCACCCAC 57 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616,ENSRNOT00000008785 3 2 2 82 7 97961808 97962759 TTTAGGAGGAAATTCAGAGTGG 58 97961747 97961765 CTCGAGTCCTTCATGTGAG 57 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 1 3 3 91 8 120444315 120444334 GAAAGTCTGGATGAGGAGGA 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Lysmd4 ENSRNOG00000050624 ENSRNOT00000075131 1 1 1 80 1 128200419 128202369 CAGTATGGCTGCAAAGTCG 59 128202410 128202431 GATCGATTTCAGAGCATACAGG 59 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598,ENSRNOT00000077938 3 2 2 80 2 39446651 39446669 CTGGCATGTTCACATCCAG 59 39446713 39449915 TAAACACATCTGCAGCCTG 58 NA Rattus norvegicus 81 Kat2b ENSRNOG00000011871 ENSRNOT00000061882 3 1 1 80 9 4447432 4447452 CAAGTAAAGAGCCCAAAGACC 59 4447270 4447390 CGCTTTGATGGCTCTTCAC 60 NA InUTR Rattus norvegicus 81 Cand1 ENSRNOG00000007834 ENSRNOT00000010720 3 1 1 80 7 62151395 62162041 AGGACTTCAGGTTTATGGC 57 62151333 62151351 TTTCGCTGTCATCATCCAG 58 NA Rattus norvegicus 81 Itgax ENSRNOG00000036703 ENSRNOT00000054983 3 1 1 80 1 199561220 199561456 TTTGCCATCGAGGGTACAG 60 199561500 199561518 GAACACAGCACTGAATCCC 59 NA Rattus norvegicus 81 Prr14l ENSRNOG00000048891 ENSRNOT00000072368 3 1 1 80 14 83236913 83245290 CCAGTCAGGATCTCCTCCT 60 83245332 83245352 CTCTGTTCTTTCGTGCATCTC 59 NA Rattus norvegicus 81 LOC100911318 ENSRNOG00000030722 ENSRNOT00000040754 3 1 1 60 X 136736950 136736971 GGAACAGTATATGCTATACCCA 57 136736911 136736931 GTGAGAAGACCTTGTTTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ino80e ENSRNOG00000019960 ENSRNOT00000027033 2 1 1 80 1 198297706 198297884 CCTCATTTACGAACACGAGTG 59 198297646 198297664 CTCTTGTCTCGGGAAACCT 59 NA Rattus norvegicus 81 Sirt3 ENSRNOG00000013828 ENSRNOT00000018861 3 1 1 85 1 213626920 213627016 TATCCCAGACTTCAGATCCC 58 213626854 213626872 GTTCAAAGATGGCCTCAGG 59 NA Rattus norvegicus 81 Xrcc6bp1 ENSRNOG00000045629 ENSRNOT00000074743 1 1 1 80 7 70198452 70198470 TCCTTTCCAGCCTCTTCAC 59 70196553 70198409 GCTTGACATACGGATTCGTC 59 NA Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 2 2 2 80 X 32072807 32076357 AATGGTGAATCAGAGCTGG 58 32072745 32072763 ATTTGAGGAAGGCCAACAG 58 NA Rattus norvegicus 81 Traip ENSRNOG00000030101 ENSRNOT00000052289 3 1 1 80 8 116735070 116735555 AGTGTAGAATCCAGGTTGGC 60 116735597 116735616 CCAAGACACTCTCCTCTTCC 60 NA Rattus norvegicus 81 LOC100359968 ENSRNOG00000048885 ENSRNOT00000060443 2 1 1 82 8 37209171 37210029 GCTCCCTACAAGCTTTGAC 59 37209107 37209125 CTGACAGCAACCTTCTCCT 59 NA Rattus norvegicus 81 Hmg20a ENSRNOG00000016905 ENSRNOT00000022976 3 1 1 83 8 61126809 61133746 GGCTGTAACTGGGTTAACAC 59 61133792 61133810 TCCTCCACAAATTCTGGGT 59 NA Rattus norvegicus 81 AABR07055600.1 ENSRNOG00000047030 ENSRNOT00000074121 2 1 1 80 7 6885157 6885179 CCTACTAGTTATCTGTTCCTGG 57 6885098 6885119 CAGAATTCTAGTTTGAGTCCCA 58 NA Rattus norvegicus 81 Zfp36l3 ENSRNOG00000029788 ENSRNOT00000050601 3 1 1 60 X 73475612 73475630 ACAGCTACCTATGCTTCCC 59 73475654 73475672 ATCCAAGCCATTGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnk1 ENSRNOG00000015578 ENSRNOT00000056860 3 1 1 80 10 56460389 56460408 AGAAGGCAGTGTTACAAGAC 58 56459789 56460346 TGGAAATGCCTTTCATCCT 57 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663,ENSRNOT00000082138 3 2 2 80 5 157920026 157920045 GACAAACCACAACTCAGTCC 59 157920088 157920722 AGCTCTCACCCTCTTTCTC 58 NA Rattus norvegicus 81 Zfp12 ENSRNOG00000006958 ENSRNOT00000038577 2 1 1 60 12 13373042 13373060 TCACAGAACTCACTCAGGA 58 13373000 13373020 GTAGAAAGTCTTCCCACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm4 ENSRNOG00000019221 ENSRNOT00000025994 3 1 1 80 2 210836539 210836559 CTTATATTCGAACCCAAGTGC 57 210834904 210836497 GATCTTCTTCAGTCCCTCG 57 NA Rattus norvegicus 81 LOC499331 ENSRNOG00000025644 ENSRNOT00000017133 3 1 1 67 1 234667125 234669677 CAGCCAGCACAATGAAGAC 60 234667076 234667094 TAGGTGGTAGAGGGTTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000004693 3 1 2 89 X 31761383 31762618 CTTCTAGAACTAGGAGCCAGTG 60 31761315 31761333 GATGACCTCCACACTGGAC 60 NA Rattus norvegicus 81 Fanci ENSRNOG00000016689 ENSRNOT00000050759 2 1 1 80 1 141166647 141166667 TATAAGAGTCCTGTCACCCTG 58 141166704 141166808 CTCTACATCTTGATCTATGTCTCC 58 NA Rattus norvegicus 81 Lif ENSRNOG00000007002 ENSRNOT00000009313 3 1 1 83 14 84498193 84498214 CTCATGAACCAGATCAAGAGTC 59 84498257 84498848 CCCTTGAGCTGTGTAATAGG 58 NA Rattus norvegicus 81 Wdr47 ENSRNOG00000020330 ENSRNOT00000055862 1 1 1 80 2 211424207 211424228 CATTCTGTTGTTAAGCCATCAC 58 211424266 211427274 CTTTGACTTGTCATCCTCTTCC 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 1 2 2 80 16 56317718 56326672 GGACGGATGTTCATATTCGAG 59 56326714 56326732 CAACCAGCGACACTAAGAG 58 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000077878 2 2 3 64 7 66717510 66717528 GGCCTTGTCACTAGAATGC 59 66727008 66727026 TTATTCCCGATTCAGCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Fam64a ENSRNOG00000008040 ENSRNOT00000010975 1 1 1 93 10 58616388 58616814 CTCTCCCAGTGAGTCTGAC 59 58616871 58616889 CTTGATGGCTTTGTCCAGC 60 NA Rattus norvegicus 81 Txndc9 ENSRNOG00000018593 ENSRNOT00000025098 2 1 1 80 9 44656444 44656462 GAAGATGAGCTGGAACTGC 59 44654520 44656402 GGAAAGCCATTCTTGTTTCTG 58 NA Rattus norvegicus 81 Myl3 ENSRNOG00000020955 ENSRNOT00000028458 3 1 1 80 8 119033872 119035104 CAAACAGGAAGAGCTCAACTC 59 119035144 119035164 TCTTTGTTCTTGGAGATGTGC 59 NA Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 2 2 2 80 14 89199470 89199491 CATCGACATAAGGAAACTCCTC 59 89197875 89199432 TTATTGACGATATTGCACACCG 60 NA Rattus norvegicus 81 Cldn4 ENSRNOG00000001476 ENSRNOT00000002003 3 1 1 60 12 24761795 24761813 TTATGGTGCCTGTGTCCTG 60 24761836 24761855 ACCAGAGGGTTGTAGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il6st ENSRNOG00000013963 ENSRNOT00000018877 2 1 1 80 2 44293277 44294330 TCACCATACTTTCAGGCTATCC 60 44294371 44294389 GACACAGCATGTTCTTCCC 59 NA Rattus norvegicus 81 Aebp1 ENSRNOG00000013720 ENSRNOT00000018846 3 1 1 84 14 86107620 86107638 TGACTACCTTCTTCGTGGG 59 86107685 86107797 CCATGGAAGGTCATTTCCTC 58 NA Rattus norvegicus 81 Unc45a ENSRNOG00000012357 ENSRNOT00000017407 2 1 1 80 1 142121012 142121030 AGGACTGCAGAACTTTGAG 57 142120044 142120970 TTCAGGATCTTCTGTCTAAGC 57 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 3 2 2 80 8 61768825 61769542 ATCTCAGAGCATTGATACTCCAG 60 61769582 61769600 AAGCCCATGATCAGGTCAG 60 NA Rattus norvegicus 81 Prss46 ENSRNOG00000020981 ENSRNOT00000028479 3 1 1 82 8 119126381 119126399 GGAATGTACATCTGCAGCG 59 119126440 119126676 GGGTTCTTAGATCTTTGTAAGCAG 60 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 3 3 5 89 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4419002 4419022 TGAAGGCAATGAAGAGAAGGA 60 NA Rattus norvegicus 81 Slc30a2 ENSRNOG00000054142 ENSRNOT00000082245 1 1 1 80 5 152569405 152569425 CTTACACAGCCTGCATATCTG 59 152569467 152569770 TCAACATTCTGGGCAATGG 58 NA Rattus norvegicus 81 Klk10 ENSRNOG00000030281 ENSRNOT00000048240 1 1 1 80 1 99720981 99721641 CCGAAGAGTGAAATACAACAGG 59 99721681 99721700 GGGTAGAAGGTCTCACACTG 60 NA Rattus norvegicus 81 Zbtb47 ENSRNOG00000019382 ENSRNOT00000043346 3 1 1 81 8 130405493 130405511 CTTCAAGCGCAGTATGTCG 59 130405555 130406453 CTCATTGCAGTTCTCACAGC 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 3 2 4 80 14 84311013 84311033 TATTTGACTGTGAAGGTCTGG 58 84311075 84311996 CAAGGAGGCCAAAGAACTC 59 NA Rattus norvegicus 81 Bbs1 ENSRNOG00000019832 ENSRNOT00000026915 2 1 1 80 1 220161640 220161659 GCTGGAGCTGAATGAAATGG 60 220159761 220161598 ATGGTGGTGATGACTGTCTG 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000090593,ENSRNOT00000080108 1 2 6 81 5 158074195 158080492 CATGTTTAACCAGCTGCGG 60 158080535 158080555 CAACGTGTCTTCATTCTCCTC 59 NA Rattus norvegicus 81 LOC100911874 ENSRNOG00000049995 ENSRNOT00000073557 1 1 1 80 9 52822784 52823723 TCACCTAAAGATACTGAGCCA 58 52822724 52822745 TTCAAGTTCACGGATGTTAGAG 59 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 2 2 2 80 2 30536865 30536884 CTATGAAACCGACTACACGA 57 30534397 30536824 GTGATAGGTGGATATTCCCTG 58 NA Rattus norvegicus 81 Olr139 ENSRNOG00000048713 ENSRNOT00000040131 2 1 1 60 1 169183386 169183408 AGTGAGGTCATTGGTAGAATAGG 60 169183427 169183446 GAAGAACAGCCAAGACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd6ip ENSRNOG00000008981 ENSRNOT00000012114 3 1 1 80 8 121925660 121926854 AATATACAGGTCTCACACCAGG 59 121925601 121925619 CTTCAGGACCTCTTCCCTC 59 NA Rattus norvegicus 81 Igsf9b ENSRNOG00000009253 ENSRNOT00000012391 2 1 1 80 8 28385174 28385729 AGTCTTGAGTCTCCCTTGTC 59 28385772 28385790 GTCAGAGGATTCAGACGGG 60 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000084336,ENSRNOT00000014152 1 2 2 80 1 131449145 131451942 TTCACCTCAGATGCCTGTG 60 131449083 131449101 CTCTTCCAAAGCACACTGG 59 NA Rattus norvegicus 81 Olr84 ENSRNOG00000030275 ENSRNOT00000048411 3 1 1 60 1 168341886 168341906 TTCTGGTTTCATGATGGAGAG 58 168341924 168341946 GAATTAGGAAGATCTGAGTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts15 ENSRNOG00000009892 ENSRNOT00000013341 2 1 1 81 8 31982603 31982622 CACGTGACAAGTGTAAGCTC 59 31982444 31982560 GTACCATCCACCACCTTAGG 60 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 2 2 2 80 1 73730894 73730912 GCAACAGTACTACCAGTGG 58 73729828 73730850 CTCTGGTACATGCTCATGG 58 NA Rattus norvegicus 81 Eomes ENSRNOG00000042140 ENSRNOT00000013530 2 1 1 80 8 127148750 127148768 CCCAGACCTTCACCTTCTC 59 127148807 127148914 CGATCTTTAGCTGGGTAATATCTG 59 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 1 2 2 80 2 218967498 218967517 TAATGGTAGACGATGACGTG 57 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Dbndd2 ENSRNOG00000014571 ENSRNOT00000019688 1 1 1 87 3 160936349 160936369 TTTATTGACCTTGCGGATCAG 59 160936418 160937843 CATCCACTCCAGACCTCTG 59 NA Rattus norvegicus 81 Npr2 ENSRNOG00000015991 ENSRNOT00000021802 2 1 1 80 5 59129574 59129592 CCAGGTGTATACCCGAGAG 59 59129635 59130338 CAGATATACACAATGCGCCC 59 NA Rattus norvegicus 81 Dpy19l1 ENSRNOG00000026589 ENSRNOT00000036738 1 1 1 80 8 25622834 25625788 GACTCATATTCTCAGGACTACAC 58 25622776 25622797 GGAAGCATGAAGAATACATTGG 58 NA Rattus norvegicus 81 Gpsm3 ENSRNOG00000000441 ENSRNOT00000000510 1 1 1 81 20 4355580 4355816 GATGGTGAGCAGAGTCTCC 60 4355861 4355879 GAGGTGCAGATCTCCAAGG 60 NA Rattus norvegicus 81 Cdcp1 ENSRNOG00000004743 ENSRNOT00000006272 2 1 1 80 8 132273539 132274760 GATCGTCTATCAAACGCCTG 59 132273478 132273496 GGTAGTTGGCTGACATCAG 58 NA Rattus norvegicus 81 Zmynd19 ENSRNOG00000007752 ENSRNOT00000010270 1 1 1 80 3 2162235 2167197 CTCCAGCAAACAAAGGGAG 59 2167237 2167259 GGGAATTGTTCTTCTATAGGGTC 59 NA Rattus norvegicus 81 Olr1328 ENSRNOG00000061713 ENSRNOT00000080504 1 1 1 60 8 43764033 43764052 ATGTACTTCTTCCTCAGCAG 57 43764074 43764093 GGGTAATGACAGTAGAGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152,ENSRNOT00000048985 1 3 8 99 20 4485153 4485261 CTTTACTACTGGTGGGCTG 58 4485324 4485342 ATTGAGGAAGATGGTGGTG 57 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000086791 3 1 8 80 20 4458746 4458764 CAAGCTGCTACTCTATGGC 58 4458807 4459674 GTTTCTCTAGGGTCAGTCAC 57 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000082951 2 1 8 80 20 4458294 4458316 AATACAGATTCCTCCTCTATGGG 59 4458355 4458513 TCATCGACTCTGTGTTACCC 59 NA Rattus norvegicus 81 LOC691110 ENSRNOG00000038477 ENSRNOT00000033209 2 1 1 82 8 61903289 61903307 CAGGATAGTGGTCTGGAGC 59 61903353 61904790 GGTAGATGAGCTGGAGCTG 60 NA Rattus norvegicus 81 RGD1560633 ENSRNOG00000031736 ENSRNOT00000041555 3 1 1 60 8 55275868 55275887 CACTTGAAGAGGAACCAGAG 58 55275827 55275848 CCAACGTCCATAATTTATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912012 ENSRNOG00000004540 ENSRNOT00000006055 3 1 1 83 8 132241276 132241294 CTTCTCCTTCCTGTCCCAG 59 132241339 132244551 CTCACCAAATCTTTCTTGGCA 59 NA Rattus norvegicus 81 Tnfsf15 ENSRNOG00000008930 ENSRNOT00000011845 2 1 1 80 5 79554383 79557640 GCCCACCTGACAATTATGAG 59 79554322 79554344 TAGGTTATTCTCCCAGTGTAGAG 59 NA Rattus norvegicus 81 LOC685619 ENSRNOG00000029470 ENSRNOT00000049468 1 1 1 60 3 162165179 162165197 CGAGACTGTGTTTGAAGCC 59 162165137 162165155 TGGACTGGACTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563705 ENSRNOG00000034052 ENSRNOT00000047247 3 1 1 60 8 118378216 118378237 GTAAGTACGGCAAGAAGATCAC 59 118378177 118378197 TCAATGAAGTTCAAGCAACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1702 ENSRNOG00000050738 ENSRNOT00000041697 1 1 1 60 20 1111437 1111456 AAGCACTGATGAGGTTAAGG 58 1111479 1111497 GATCCACAGGTTCCAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304810 ENSRNOG00000011253 ENSRNOT00000015062 3 1 1 83 16 59324557 59324581 CATGGTATGTGACAACCTTAATCTC 60 59319093 59324522 GAGAAATGATGTATGACTCCTATGG 59 NA Rattus norvegicus 81 AABR07050438.1 ENSRNOG00000033792 ENSRNOT00000051887 3 1 1 76 5 164502351 164502374 GGAGACGTACAACAATCTATTGTC 60 164422334 164422353 TGTCTTGTTCCAAGACCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911156 ENSRNOG00000000582 ENSRNOT00000000710 3 1 1 81 20 48755509 48755530 TTCCAGCATCTTTCTGAAATCG 59 48748990 48755468 GAAATATCTGCCAGCCAGAC 59 NA Rattus norvegicus 81 Olr1326 ENSRNOG00000052349 ENSRNOT00000082000 3 1 1 60 8 43733880 43733901 GTATACAGTGATGGCCTATGAC 58 43733918 43733940 GATTGTGTATCTCATAGGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi4 ENSRNOG00000006855 ENSRNOT00000009081 2 1 1 80 5 159274652 159276605 AGGTCTTAGACAACAAAGACCT 59 159274593 159274614 ACTTGTCAAAGAAGTCTTTGGG 59 NA Rattus norvegicus 81 Grhpr ENSRNOG00000012794 ENSRNOT00000051445 3 1 1 80 5 60534015 60534035 GTCCAGAGATTTCTCTACACG 58 60534076 60535057 AGCAATAGGCACAAACTCTG 59 NA Rattus norvegicus 81 Olr1684 ENSRNOG00000040183 ENSRNOT00000061839 1 1 1 60 20 573028 573047 CTACCTACAACGAAGTCCAG 58 573070 573088 GCCAAAGGTAACACTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680,ENSRNOT00000091132 3 2 2 80 5 164705489 164709277 CTTCCTTGAAGACACCCAC 58 164705427 164705445 AGGTACCCTTTGACATCCA 58 NA Rattus norvegicus 81 Adnp ENSRNOG00000010975 ENSRNOT00000014595 3 1 1 105 3 164946964 164964581 CCAGCCAAGAAACTATGTTCC 59 164946879 164946900 CAGTATTCCAACCCAATGTCAC 60 NA InUTR Rattus norvegicus 81 Asap3 ENSRNOG00000049714 ENSRNOT00000072864 2 1 1 80 5 154578776 154578794 CCTGAACAACATCGTCTCC 58 154578837 154579793 TGCTTCTTGGAATCATGTCG 59 NA Rattus norvegicus 81 Asap3 ENSRNOG00000049714 ENSRNOT00000072864 3 1 1 80 5 154579813 154580354 GACTATGAAACCAAAGTGGTG 57 154581398 154581418 AGACAGGGTCTCACTATAGAG 58 NA Rattus norvegicus 81 Fam46b ENSRNOG00000056153 ENSRNOT00000086144 2 1 1 118 5 151692475 151698095 AGATTGTACAGGTAGTTCGCA 59 151698175 151698193 CTTGTAGCCTAGGCCACTC 60 NA Rattus norvegicus 81 Prkra ENSRNOG00000011195 ENSRNOT00000015624 1 1 1 80 3 63500693 63500712 CCTTAATGCCTGATCCATCC 58 63499708 63500653 CATGGTGAATTGCTAATTCCTG 58 NA Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051 1 1 2 80 16 70663163 70663182 AACAACAAGCTACTGAAGGA 57 70661798 70663122 TTCCAGTTCTTCCTTCTTCTC 57 NA Rattus norvegicus 81 AABR07050407.1 ENSRNOG00000025261 ENSRNOT00000045406 1 1 1 99 5 164033209 164059613 GGATGCAGGGTTTCTTAACC 59 164059675 164059693 ACATCCATGTACAGTGCCC 60 NA InUTR Rattus norvegicus 81 Slc31a1 ENSRNOG00000014475 ENSRNOT00000019544 1 1 1 87 5 78246046 78246066 CTATGACCTTCTACTTTGGCT 57 78246115 78247630 AAAGCTCCAGCCATTTCTC 58 NA Rattus norvegicus 81 C1qb ENSRNOG00000012749 ENSRNOT00000017060 1 1 1 103 5 155248630 155251859 ATTCCATACACAGGAGGCC 59 155248545 155248563 AGGAGACATGGAGCAAACC 60 NA InUTR Rattus norvegicus 81 Tm2d1 ENSRNOG00000007527 ENSRNOT00000009897 3 1 1 81 5 116999733 117008367 TTATTTCAATGCAGATCGTCGG 60 116999673 116999691 CTGAGTCTCGTGAGTCTGG 59 NA Rattus norvegicus 81 Xkr7 ENSRNOG00000009180 ENSRNOT00000012156 3 1 1 147 3 148530536 148530554 TCTGTTGGAGACCTTCCTG 59 148531674 148531692 CTGGTAGGATGCCAGTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000075600 1 1 2 80 5 98998443 98998462 TAGAGACCTTGAAGGCTGTG 59 98998503 99103021 CTTGTAGTTTCCACATCCCTG 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316,ENSRNOT00000017106,ENSRNOT00000090646 1 3 3 80 16 74804992 74805010 GGTGATCTCGATTCTGTCC 57 74805054 74806062 ATCTTCCTCAAAGTCCGTG 57 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816,ENSRNOT00000033653 2 2 2 80 3 407878 407896 TCGTTTACACAGGAAAGGC 58 405416 407837 GTTCCAGTGCATATTTATCTGC 58 NA Rattus norvegicus 81 Rbm38 ENSRNOG00000006420 ENSRNOT00000008764 3 1 1 112 3 171038196 171038214 TTTGGAGACATCGAGGAGG 59 171038815 171038833 TCTTTGCAAGCCCTATCAG 58 NA DesignNoJunction Rattus norvegicus 81 Pramel7 ENSRNOG00000021949 ENSRNOT00000039101 2 1 1 80 3 75546075 75547038 TTGTTTAGGTGTCTGAAGTCC 58 75546015 75546035 AAATGACGACAAGTCTGACTG 59 NA Rattus norvegicus 81 Col4a2 ENSRNOG00000023972 ENSRNOT00000057461 2 1 1 80 16 83397870 83400888 CAGGTGTTAAAGGAAACCGA 58 83397809 83397827 CCTTGATGTCCTTCATCCC 58 NA Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 3 2 2 115 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528553 75528571 CAACAGAGTCGGTAGATGC 58 NA DesignRelaxed Rattus norvegicus 81 Wfdc5 ENSRNOG00000013760 ENSRNOT00000018386 2 1 1 80 3 160569109 160569127 AACAGTGTCCCTCTTCCTG 59 160568956 160569065 TGCCCAGCTTTACAAAGAC 58 NA Rattus norvegicus 81 Ankrd10 ENSRNOG00000013618 ENSRNOT00000018870 3 1 1 82 16 83222384 83222404 GGAACCAATCGAAAGAGATGC 60 83222448 83224748 TGATCCAGGCTTGGAACTC 59 NA Rattus norvegicus 81 Defb14 ENSRNOG00000032304 ENSRNOT00000048414 3 1 1 101 16 75648487 75648506 CATCTTGTTCTTGGTGCCTG 60 75647750 75647768 CAGTTGAGTATGGCACACC 59 NA DesignNoJunction Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 3 2 2 80 16 90325670 90332899 ATGGACCTCAGTGTTAGCA 58 90332940 90332961 GGTATAGATGAAGAGGCAAAGG 58 NA Rattus norvegicus 81 Defb37 ENSRNOG00000038115 ENSRNOT00000058002 1 1 1 80 16 75083219 75094837 TCCAGATCAACCCATTTGCT 60 75094880 75094898 TTGGGCACTGGAGTATGTG 60 NA Rattus norvegicus 81 Defb9 ENSRNOG00000038149 ENSRNOT00000058061 3 1 1 80 16 75176454 75179042 TATGACACTCCAGTTGTTGGA 59 75176394 75176413 GTACCCTCTGATTCTCTGGC 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280,ENSRNOT00000091265 1 2 2 80 3 80849931 80849953 CTTCAACAACTACTTCAGTCTGG 59 80849722 80849891 TTCTCTGGGTTGGCTTCTC 59 NA Rattus norvegicus 81 Phf21a ENSRNOG00000006063 ENSRNOT00000067664 2 1 1 80 3 81262694 81262712 AGACCACATTCACTTTCCC 57 81262756 81268004 CCTCATGGATATCACCGTC 57 NA Rattus norvegicus 81 LOC290876 ENSRNOG00000026740 ENSRNOT00000057803 3 1 1 86 16 81305805 81307391 GAAGATGAGATAAGGACCAGC 58 81305739 81305757 CTTCTCTGAAGCACTGCTG 59 NA Rattus norvegicus 81 Il1rn ENSRNOG00000005871 ENSRNOT00000007949 1 1 1 80 3 1463321 1464866 AAGCCTTCAGAATCTGGGA 58 1464910 1464928 GTCCTTGTAAGTACCCAGC 58 NA Rattus norvegicus 81 Tbpl2 ENSRNOG00000033682 ENSRNOT00000050371 2 1 1 80 3 1098672 1108822 CAGTTCAGTAGTTATGAGCCTG 59 1098613 1098631 AAAGATGAGCAGCACAACC 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 2 2 2 80 16 79918973 79924040 TGAGCCAGATGAGTGAAGC 60 79918911 79918929 CCTGAGATTCGACTTCGCT 60 NA Rattus norvegicus 81 LOC100909545 ENSRNOG00000049613 ENSRNOT00000071681 1 1 1 80 3 160649450 160649469 GAAGTCCATCTTCTTCAGCC 58 160649161 160649409 TTTGTCCCACCATAGATTCCT 59 NA Rattus norvegicus 81 Rps28 ENSRNOG00000049442 ENSRNOT00000025380 1 1 1 60 16 71593111 71593129 CATCCGAAACGTCAAAGGC 60 71593153 71593171 TTCTGACTCCAACAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360,ENSRNOT00000079394 1 2 2 80 3 79965308 79965573 TACCAAGAAGTGTCGGGAG 59 79965246 79965264 GGTTTGATGCTTTGTTGCC 59 NA Rattus norvegicus 81 Zmiz1 ENSRNOG00000010488 ENSRNOT00000014004 2 1 1 80 16 1938564 1938582 GATGTCAAGCCACCTTTCC 59 1938625 1939122 CTCATCATTGTGGTTGGCTG 60 NA Rattus norvegicus 81 LOC685790 ENSRNOG00000027980 ENSRNOT00000034303 3 1 1 83 X 73023332 73023350 TATTCCATGAATGCAGGCA 57 73023394 73024032 AACACAGACCTCATTCATATCC 58 NA Rattus norvegicus 81 LOC685987 ENSRNOG00000047590 ENSRNOT00000075746 3 1 1 80 8 42120176 42121144 AAGCAACATCTGGATAACACC 59 42120116 42120135 ATTGCTGTTTCTCCTCTAGC 58 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461 1 1 2 80 2 150858395 150858414 TTTCCAATACCAACAGGCTC 58 150858456 150864101 ATGCACAATATTGAGCCTGG 59 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 2 3 3 80 3 3828468 3829622 CACACGCATCTATAAAGCAG 57 3828407 3828427 TTCTGTCGATAGACTTGAGGA 58 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 3 2 2 83 2 52505527 52507204 AATGCCAGGTCTGTAACAG 58 52505462 52505481 GGTTGGGTTTATCTCCAGTG 58 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330 2 1 2 80 8 108791314 108801359 TAAGGACACCTTAGGCATTGG 60 108791254 108791274 ACAAAGCTATCATCAGCAGGA 60 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000076134 1 1 2 104 3 37946948 37946966 TTCTAGGGTGAAGACCGAG 58 37939187 37946880 CTTTGTGCTCAGACGAGTC 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000084455 2 1 3 82 2 187848599 187863242 GGTAGTCAAGCTTGAGGCA 60 187848535 187848553 TGTTCTCAGCATCCACTCG 60 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859 1 1 2 81 20 5540749 5540767 GTCCAGCCGAAACAAACTG 60 5540811 5546587 CAAGTGGTATTCATGCTCGC 60 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000063943 1 1 2 80 15 40528146 40528167 CGGAAATAGCTTTAAGAACCCA 59 40526752 40528105 GAACCAAGACTCTGTCAGC 58 NA Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 2 2 2 93 11 32777409 32807361 AAAGTCAGATGCAGGATGC 58 32777334 32777352 ACAGAAGAGGTGATGGACC 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000046069 3 1 2 89 2 57209098 57209116 CTTCCAGAGATCAGCACCA 59 57210078 57210099 AACACCCATTGCAGTTACAC 59 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 1 2 2 80 3 110552673 110552692 TCTGTGACATCCACCATAGG 59 110552081 110552632 TTCTTTGACATCACACCTTCG 59 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074 2 1 2 83 8 62930776 62930794 TCTTCAGCAATCTGTGCCT 59 62930841 62930864 TTGCTGGATACCTGGATGC 60 NA Rattus norvegicus 81 Cdkn1a ENSRNOG00000000521 ENSRNOT00000091731,ENSRNOT00000000628 2 2 2 85 20 6356821 6356839 CTGAGAGGCCTGAAGACTC 59 6356884 6357488 GTGATAGAAATCTGTTAGGCTGG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000089166 2 1 2 113 5 136086853 136086871 GACTCTCAAGACTGCCCAG 60 136074950 136083995 ATCGAAGAGTCTTCATACTGCA 59 NA Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000082180 3 1 2 98 14 79461203 79461903 CAACATCAGGCCTTCTCCT 59 79461123 79461141 GTCTTTGGCTCACAATGCC 60 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 2 2 2 80 1 282572326 282572344 CAGAAGCTCTGATACGCTG 58 282572385 282572682 CAGGAATCATCTTGAAGACCTG 59 NA Rattus norvegicus 81 Smap2 ENSRNOG00000011421 ENSRNOT00000015250,ENSRNOT00000079957 2 2 2 80 5 139890605 139890624 CAAGAAACAGCTCTCCAAGG 59 139889715 139890562 ATGAACATTGCTTGGGCAG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 1 2 6 80 1 76610661 76614124 CTTATCCCAAGTCAGGAACGA 60 76610601 76610621 ATTGGATCCACTTGGGATCTC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000064593 1 1 6 80 1 76470299 76470877 AGTACTCTAACTTCAAGCCTG 57 76463701 76463721 TGAAGCAAACATATAGGTGGG 58 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343 3 1 3 93 14 86159554 86164229 AGTTGTTGACTCTGGTCGA 59 86159479 86159497 TCCATCTCCTTCTGCATCC 59 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116 2 1 2 88 11 47263036 47263054 GAACTCGGTGAAAGAGCTG 59 47263104 47266326 GAAAGGCACTCTTAAACTCGT 59 NA Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 3 2 2 80 2 46983765 46983784 CCAATCAGTGGAGGATAGTG 58 46983825 46987452 TCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000057734,ENSRNOT00000082549 2 2 6 85 17 84171264 84171282 CAACCTATAAGGCCACTCC 57 84168275 84171216 ATAATAAACCGCACTCAGCT 57 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027 2 1 2 84 1 211990152 211990170 AATGTACGCCCTACCTTGG 60 211989945 211990106 CGAATTCACAAACCTCCACAG 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513 2 1 3 94 9 8091222 8091243 CTTTCTATGCTGCTTATCTGGT 58 8093279 8093298 GTGCTATTGAAGCCGATGG 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 3 2 3 80 13 26010248 26010266 CAATTGTGGTGTAAGCGGA 59 26010310 26011300 AGTCTGTAAGTGCCTTGCT 59 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000048417 1 1 2 93 11 46202427 46202445 GTACCAACAGTACCAGCAG 58 46202500 46205154 TGACTGGAATCCTGAATACTG 57 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010 1 1 2 80 X 40277977 40281547 GCCATTAGGGAACAAGTTCG 59 40281587 40281608 GAACAGATCAACAAATGCTCCA 60 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 2 1 2 81 6 96165577 96165595 GCTACACTCTACAGGGACC 59 96153236 96165170 GCATTGAACCTGTCTTCTGC 60 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 2 3 3 80 9 94959473 94959492 CAGAGAAAGAAGAGGCATCG 59 94959534 94961819 TCCTTGATAATGGTGCTGGA 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817 2 1 7 80 11 46245063 46245639 AAAGTGAAACTGTTCTGCCT 58 46244225 46244243 TGTCCCGTGTCTCTAAAGG 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000083779 1 1 3 80 5 22749267 22756048 GACGGTGTTGATGAAGGAC 59 22738034 22738058 CTCGGAAGTAGATCTTTCTTTAAGG 59 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000085079 3 1 2 80 X 14905436 14909619 TTCATGACAGTGAAGGAGCT 59 14905375 14905396 ATATCACTCGAGTCTTCCTCTC 59 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 2 2 2 80 1 7314032 7316425 CAACAGATGTTCTGGAAAGAC 57 7313972 7313991 GCTTTAAGGAGTTGAAGGGT 58 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002946 3 1 2 90 14 6931050 6931069 AGAATCTCAGTCCCACAGAG 59 6930261 6930998 CCTTCGGTTTCTAATCCCTG 58 NA Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 2 2 2 122 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079890 111079909 AGAAAGACATCGGTATCCGG 59 NA Rattus norvegicus 81 Mgst1 ENSRNOG00000007743 ENSRNOT00000010579 3 1 1 65 4 172128462 172128481 AGAAGTTCCTTCGGACTGAC 60 172134005 172134023 TTTCAAGGTCGTTCAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000003428 3 1 2 99 13 35629716 35633855 GTGAAAGGTGAAACAGGGA 58 35626229 35626247 GCACAGGAGACTTCATACC 58 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 3 2 3 101 5 25580000 25583505 CAGACGAATTGGAATCCCG 59 25579917 25579935 TCACAGTTACGGACGAGAG 59 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012295 2 1 2 86 8 63379309 63419557 TCAGAACGAACCAAGAATTGTC 59 63419603 63419622 GAAGTGAGGTTACACTGCAG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000009802 1 1 2 83 X 39948651 39951440 AAAGCACTTTAAAGGCCAGAG 59 39951479 39951503 GGAATTCTTTAGATGTCAAGTCTGG 60 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000086426 3 1 3 156 8 90958759 90958778 AGAGTGAAAGACACAGAAGG 57 90958620 90958643 CTTAATCTTTCTCGGTGTTGTC 58 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 2 2 2 85 1 71253363 71253385 GTGATCTCATTACTGGAACAAGG 59 71253430 71260667 ACATACTCCCAATCAGGGC 59 NA InUTR Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 3 2 2 80 4 118546279 118546299 CAGAAGGACATTGAACAGAGC 59 118544786 118546239 CATGCACTTCACTATAGCCAG 59 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 1 2 2 110 3 146982030 146983297 CAGATTGCACTTGCAAGCT 60 146983367 146988570 TCTATTATCACTAGGAGCTGTGC 60 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 3 2 2 90 17 38712548 38713753 CCCAACAGTTCCAACTGGA 60 38712476 38712494 ATTTCAGCCCACAGATGGT 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000075193 3 1 2 89 6 60774227 60778774 TTCTGCACCTGAGAAAGCT 59 60778825 60782111 TGTACAGAGCTCTTCAATGGA 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531 1 1 2 80 2 187987052 187987070 ATCTCCTCTTGGACTGCTC 59 187987978 187989049 GCTGTTTACCACATTTGTTGAG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 1 3 3 88 10 4345458 4345477 TTTAAGGACAGCAGGAACCA 59 4345523 4347177 TGGTCTTACCTTCATCTCTTAAGG 60 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 1 2 2 80 1 207756471 207756489 TCAGCAACCCTTACCAGAC 59 207752090 207756429 TCAGAAACACAAAGGATGCAC 60 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850 3 1 3 83 12 8032859 8032877 CTCAGCTAGCAGGTGTGAG 60 8032923 8085549 CTGAGCAAATCTGTGGAGGA 60 NA Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 1 2 2 80 2 189730376 189730533 ATACACTTCGACAGGCTCC 59 189730577 189730595 AGTTTGAAAGCATGGAGCG 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000049426 3 1 4 93 9 117651277 117651295 AAAGAGGCTCTCCACATCC 59 117651351 117660584 CGTTTCCAGTTTCTCCTCAG 59 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 1 2 2 80 18 37007714 37007732 ACCAGAGACTATCTGACCG 58 36988929 37007673 GTAGTCATGAACCTGGTATGTC 58 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 2 2 2 80 4 176588159 176588977 ATCTCTACTATGAGGTTCGGC 59 176588099 176588120 ACCGTCCATTAATAAGGTTTGC 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599 3 1 2 80 13 80697726 80698286 GGTTTAAGACTACTGTGCGG 59 80697665 80697684 CTGTCTCTGTGACAACTTCC 58 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000083124 3 1 2 80 11 60532613 60536078 CATCCATGTGACAGAAAGGAC 59 60528909 60528927 CCTGCTAAGTCAGAAGGCT 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 2 1 2 80 11 60536074 60536094 ATAGCCACTCAGTAGTCATCC 59 60531121 60532592 GGATGTCAGATGCTGTTATTAGAG 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000004010 1 1 3 80 10 35361922 35361940 CCCTATGTGGTAACTCGCT 59 35361982 35363001 AGACCAGATGTCCACATTCTC 60 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000086899 2 1 2 80 16 54848533 54848554 TCAACATCATGTTTACTCCTGC 59 54848592 54851375 TCTTGAATCTTGAGTTCTCGTC 58 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524 3 1 2 80 2 173676199 173692017 CTCCGAGACTTTGAAAGCTG 59 173676138 173676157 GGCTTGTCTTGTCTTTCACG 60 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000029677 2 1 2 80 9 53453117 53453135 GAGGGCTCTACAAAGACCT 58 53450300 53453076 AAAGTCATGACCTTCCATACAC 59 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000079598 3 1 2 99 11 47200233 47218316 GAGGAATCTCGCATACTTGGA 60 47218377 47218395 ATTCCGACTGAAGCCTGTC 60 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 2 1 1 121 18 32595181 32595199 GATGCTTGTGACTCTGCAG 59 32605435 32605453 GAGCTGGGATTCAAAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100 1 1 3 109 1 140846360 140846382 GTATATGAGGAACAAGGAACCAG 59 140845776 140846189 TGAGTCAACCCATAGCGAG 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000011770 3 1 2 81 4 174755803 174755822 AAGAGGCTCTTCAGAAACAG 58 174757878 174760303 TCTATAATCTGGACCCTCGC 59 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 3 2 2 80 X 44976229 44979111 TCCAAGGACATACTAATGAGGT 59 44979152 44979170 TCATGTCATCAGAGCAGGA 58 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 2 2 2 80 17 18454133 18454247 TCCATCACCGTCGATAACTG 60 18454072 18454092 CTTGGAGTTGATCACTTCCAC 59 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 1 2 2 80 13 89392364 89395470 CAGATAAGCATAGGAGATCCGA 59 89395511 89395529 GAGTCCTATCAGCAGGCAG 60 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000090042 2 1 2 91 1 177651603 177651621 GACAAGGACTAGGAAGCAG 57 177654067 177654175 GACTAGACACCTTAATGGCG 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000001203 3 1 2 89 12 6303352 6303370 CTGGAAACGGATGTTCCAG 59 6303423 6303658 GTTGCCTGTCTCAAACAGG 59 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252 3 1 2 80 12 6267815 6267833 CTGTGATGTACGTACACGT 57 6267876 6274288 GATCCCAGATCTTGACTGTG 58 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 2 2 2 80 17 15976684 15976702 GAAGGTGCATGATCCTGAG 58 15976744 15977939 TCCTTAATCTCGTACCTCTCC 58 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 1 2 2 80 1 274350256 274350425 GGATCAGGGTATCATTTACAGGA 60 274350465 274350483 CTACCAGAGACTTCTGCCC 59 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000006832 1 1 2 80 6 7882909 7882929 GCATTCGCATTTACTTGACAG 59 7882971 7885429 CACTGACAGATGGTTTGGC 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927 1 1 2 80 13 99413568 99415187 TTGTGATTGCTATACGGGTG 58 99413507 99413528 CCTGTTATTTCTTGTCTCAGGG 59 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000064275,ENSRNOT00000086560 2 2 2 80 19 19699997 19700789 GTACCTTGCTGAACAAGTGAC 60 19700829 19700849 CCGTGTATGCTTACAACATCG 60 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 2 6 6 84 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646211 282683839 GAGGAAGCATCATTTGTGC 57 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656 1 3 6 81 1 282681117 282681757 CTAACCTGCCTGTGATGGT 59 282681800 282681820 GCCAATAGAGATCCATCACAC 59 NA Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219 3 1 2 85 19 30880258 30880278 GAATGAACGGCTTTCAGCA 59 30880327 30880345 GTTATAGAGGCCGGACTCG 60 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079 1 1 3 80 18 29487827 29487845 TCACCTCAGCTAACCAGAC 59 29487889 29492125 TAGATGATCCTGGTGCCTC 58 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000078619 3 1 3 108 1 220855177 220857628 ATTGCCGGGACATAGATGAG 60 220857699 220857717 TTAGGTCCCAACTGGAAGC 59 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000052315 3 1 3 113 1 220855933 220855951 ATCTCCACAGTGAAGGACC 59 220856026 220857632 GACACTCATCTATGTCCACAC 58 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 1 2 5 80 16 19727746 19727764 TCCTGTCACTCGAAGTCAC 59 19727807 19730707 TTATGCAAATCGCGGTACAG 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472,ENSRNOT00000076353 3 3 4 115 19 758315 758338 CAGCTTCTTCAATAGTCTGTTGAG 60 760000 760019 GAACGTTTGACAACACAGTC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 2 1 1 60 10 64175195 64175213 AAAGACTAAAGGATCGGGC 57 64178039 64178057 ATTCTTCCGACCTCGACTG 59 NA DesignNoJunction Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 2 2 2 80 3 148804537 148804557 AGGATACAAGAGACCACTGAG 59 148804599 148809496 ATGTTCTCTGCCCTGTACC 59 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162 2 1 2 83 13 90275160 90276015 AAGGAGAGCAGATGATGTCTC 59 90276056 90276078 TCATAGATTCTGGACTCTGTGAG 59 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000024313 1 1 2 80 18 29500808 29500966 GCACATCCTATTCAGGCAG 58 29500746 29500766 ACCAATAAAGGTTACAAGGCG 59 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000024313 2 1 2 80 18 29500806 29500965 CACATCCTATTCAGGCAGAG 58 29500745 29500765 CACCAATAAAGGTTACAAGGC 58 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 2 2 2 80 11 57247457 57254071 CTAGTTCACAGGAATCTCCCT 59 57254113 57254131 TGTGATGATGTTGACACCC 58 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777 1 1 2 82 10 81755832 81772378 GCCTGAAGGATGAACTTTCTG 59 81772421 81772440 TGACACATCCGAATTTGCTG 59 NA Rattus norvegicus 81 Pik3cb ENSRNOG00000016384 ENSRNOT00000022179 2 1 1 80 8 107300483 107302280 AGATGTTGCTCAGCTTCAG 58 107300421 107300440 TTGAAATCCAGGAGTTCCAG 58 NA Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000085832 3 1 2 148 10 34524899 34534713 AGGGTACATGGCTACTTCC 59 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000052360,ENSRNOT00000085832 1 2 2 146 10 34519822 34534715 GGTACATGGCTACTTCCCA 59 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccar2 ENSRNOG00000018295 ENSRNOT00000024895 1 1 1 80 15 51820509 51820527 CCAGTATCGGAGCCTTCAG 60 51820368 51820465 TCCAGGTTTCCAAAGAGCA 59 NA Rattus norvegicus 81 Ccar2 ENSRNOG00000018295 ENSRNOT00000024895 3 1 1 80 15 51821241 51821601 GAGGAAGAGTTTGCAGGAG 58 51821179 51821199 AGAATATTCCATCTCGGACTG 57 NA Rattus norvegicus 81 Pttg1ip ENSRNOG00000001223 ENSRNOT00000001638 1 1 1 85 20 11763523 11763541 TGGGTGATGTTCCTCAGTG 59 11758936 11763474 TACTCAGAGCAACCCACTC 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107 2 1 2 80 10 59682169 59682187 AGCTGCCTTATGAAGTGGA 59 59682230 59683680 ATCCTCACAAAGCTCCTCTG 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019309 1 1 3 80 1 193251603 193255714 TGAAGAAGGAGAGTCCTCCA 60 193251542 193251563 TTATCTGGTTGCTGTTTCTTCC 59 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 1 2 2 80 13 98454044 98454062 CCACAGAGCTGATAACAGG 58 98453779 98454002 TGTTGTAGCAGATCTCATTCC 58 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000045628 1 1 2 80 8 111696174 111696195 TGAAGAGTACTTAGGAGCAGAG 59 111694753 111696133 CAGGCTTCTAGGAGTCGTG 60 NA Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 2 2 2 80 14 108906183 108911068 GCAGGGTATTTGTAAAGATGAG 57 108911109 108911127 AAGAGAAACCATGCACTGG 58 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 3 2 2 80 17 30699843 30703883 CGAAGAAGAGATAGGAGTCGA 59 30699783 30699801 GCTCCTTCTCCTATGACCA 58 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000030461 3 1 2 83 1 211368573 211368591 TGTCTACCATCTGCACCAG 59 211368637 211378118 CTTATCTCCTCCATCAGCCT 58 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 2 2 2 80 18 51578129 51578147 AAGGCAAGACTTGGAAGGA 59 51578191 51578866 TCGGTCACATGGAAGTCTC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000089763 3 1 2 81 8 48721811 48722116 TTACAGAGCACGAGATCTGG 59 48722160 48722178 ACTCCAAACAAGGCAATGG 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 2 2 2 80 15 41121545 41121563 GGCGTCACCTTATATGCAG 59 41121607 41123143 TTCATGAACAACAGCCAGC 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 2 2 2 120 3 57389794 57389812 AGTACTGGGAGTTGCAGTG 59 57363920 57376267 ATTGTTTCTTCTCTGGTGTCTC 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000077991 1 3 9 106 20 2083570 2088290 AAGTTAAGATTGGCTTGGGC 59 2079779 2079799 GGGAGTTGTAATTCTGGTCAC 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000046246 1 1 6 80 6 4315009 4315030 AGGAATATGAGAAAGAGTGCAG 58 4311881 4314968 TGAAGCCACCTTTCATTCC 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000043870 1 1 6 80 6 4315009 4315030 AGGAATATGAGAAAGAGTGCAG 58 4312316 4314968 ACAACAGGGCTTTCATTCC 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000043870 2 1 6 81 6 4315009 4315031 GAGGAATATGAGAAAGAGTGCAG 59 4312316 4314968 ACAACAGGGCTTTCATTCC 58 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000076751 2 1 4 82 1 267625477 267627837 AAGCATCAGGTTCCTGTCC 60 267627883 267627901 ACGTCATCCAGGTACTCAC 59 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 3 2 2 97 10 49004717 49005087 GTCCAAGTCTCAGGTGGAG 59 49004638 49004656 ATTCCTCCAGGTCAAAGCC 60 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000072970 3 1 2 81 10 49008252 49008271 AAACACGACAATATCATCGC 57 49006912 49008209 GTACCACGTAGACAGATCTG 57 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733 2 1 2 85 6 132421372 132425318 ACATTCAGTCCAGAAGAGGG 59 132425365 132425384 GAATCCACTTGGTCTTTGGG 59 NA Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748 3 1 2 92 16 19366511 19369075 AACTGCAGATATGGGACAC 57 19363174 19363192 CGTAGACCAGCATGATACC 58 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 2 1 1 60 X 48196958 48196977 TTCTTGAGCAAATGGATGGG 59 48210299 48210317 CATCTGGTTCCTTTCCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000078039 2 1 3 80 1 32092717 32093422 TCAGCCTAAAGCCAGAGTG 59 32089806 32089824 CCACACCATTGAGCTTCAC 59 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 1 1 2 245 2 181899921 181899940 AAACTGTACTTCTGGTTGCT 57 181899665 181899683 CTGCTGTGACATACCTCTC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000084535 1 1 2 96 10 63327681 63332247 TGAGTCAAAGGTTTGTGCT 58 63332306 63332325 ATTCCAGTGGTCTTATGCTC 57 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000058163 1 1 4 80 5 115204774 115204792 GGCTGGATTTAACTTGCCA 58 115201690 115203023 GTAACCAACCACTGTGAGG 58 NA Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410 2 1 2 100 1 37738002 37740010 AGTGTCCTTTCTATAAGGGCC 59 37737922 37737940 AAGATGGAGATCCATGGGC 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 1 2 2 147 4 120412405 120412423 TTGAGGAGGTGAAGAGCAC 59 120412534 120415006 ATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 3 2 2 148 4 120412405 120412423 TTGAGGAGGTGAAGAGCAC 59 120412534 120415007 TATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000079291 2 1 2 80 4 182583741 182583761 GAAGAGCATTCCCTTCAAGAC 59 182583014 182583699 ATCATCTTCCCTTGGTGGC 60 NA Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699 1 1 2 114 19 25051389 25051407 AATAACCGAACCCAGTGTG 58 25051485 25054730 GCTCCACTTTGTAAGGGAC 58 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314 3 1 2 92 5 167173505 167174099 AGAAGAACAAGCCATGTCAC 59 167174151 167174172 AACAGAATACTGTCGTTGACAG 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083763 2 1 2 80 14 108476456 108476474 GAACCAAGCCAAACATTGG 58 108476516 108478482 AGTCAACATCTACAGACTCCA 58 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 2 2 2 80 15 56764461 56764480 TTGCTATCTACCTACCACCC 58 56764521 56767193 GTTCTGTGCAAGTTAAACCAG 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332 1 1 5 80 1 20903358 20909576 GATACTAGCGAGTTCACATGAG 59 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000055473 2 1 3 85 4 181148156 181148399 CTCTGAAGAGGCATTCAGTG 58 181152760 181152778 GCTGAACAATCACTCCAGC 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000080694 1 2 4 80 19 41240983 41247360 GGAATGTTTCCTATGGATTTCCC 60 41240925 41240944 GCAGTTTGAAGGTCATGGAG 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000087597 2 1 2 61 16 19637822 19637840 ATGGAGGAGACCTTCAGGA 59 19637565 19637586 TCTATGTTCTGGTCTTCTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 2 3 3 80 2 264992513 264994600 GATAATCAGTCCAAGGCCC 58 264992451 264992470 CATGTAGTTGGTCAGTACCC 58 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024 1 1 3 80 2 264971167 264971186 GCCATTACTTACCCAACGG 59 264971104 264971123 AAAGCATCACTCATTGGCAG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000014211 1 1 3 80 5 57454076 57454179 CTTGCTTCGTTTACAAGTGG 58 57454015 57454034 AGGAAAGCATCAATCCTCTC 57 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 3 3 3 80 6 8320613 8320631 TTCGTCCGATGAGAAACAC 58 8320190 8320569 ACTGAAGGGTAATGCTGTG 58 NA Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210 1 1 2 105 12 6931958 6931979 GAGACACATATCGTTATTTGGG 57 6931398 6931892 CTTCAATTCCTGACACGGA 58 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915 3 1 5 80 7 120768819 120769851 GGTACTTAATGAGTTCCGGTC 58 120768759 120768778 CTATACAAACCTAGCCCACG 58 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 2 1 1 61 20 7219422 7219440 GACAAGAACGTTCCCAACC 59 7219301 7219319 TAGCCTCGAGACTTGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 1 2 2 80 3 111057715 111057960 TCAGTGTTAAGAGAAACCATCC 58 111058000 111058019 TTCTTGTCAGTTGGAACAGG 58 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733 1 1 2 80 1 44019399 44045283 TTCAACAGCGAGTTGTATTCG 59 44045325 44045343 GGCTGCCTTTGTAATCTGG 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000088654 1 1 2 218 13 99175019 99175041 GCTGGAAGTTCGATGTGAC 59 99177464 99177482 GGTCACAATTGCCTTGAGC 60 NA DesignRelaxed Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000088654 2 1 2 219 13 99175019 99175041 GCTGGAAGTTCGATGTGAC 59 99177465 99177483 GGGTCACAATTGCCTTGAG 59 NA DesignRelaxed Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 1 2 5 80 15 10296383 10296401 AGGGCATACGATTTAGCTG 57 10293158 10296339 GCGAAATCCATTTACAGGC 58 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000088995 3 1 2 82 7 70460925 70460944 CTACTTTGCAACTCGTGGAC 59 70460761 70460880 GTACACTACCTGGCTTGGT 59 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000081171 1 1 3 80 8 1586748 1586766 TGAAAGTGGGAGGAAACCT 59 1554886 1586709 GGTTTACAGGAGTTCTTAATGAGG 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000044390 3 1 2 80 1 214049016 214049035 TGGGATTGAACTTCTATGGC 58 214046207 214048973 AAAGCTGAATTCTGGCTCC 58 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 1 2 2 80 7 75412480 75412498 CCTCCTAGCCAAATTGCTC 58 75411832 75412439 CATATTCTGGAATGGATGAGGT 58 NA Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 2 2 2 80 X 128186546 128186565 TGGGACTTCTTCATCATCCA 59 128186265 128186507 CTCTCCCTTGATTTATCAGTCTC 58 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776 1 1 2 149 10 104141804 104141822 CAGGCATCCCTATCCTTCC 59 104140908 104141691 CCACAGGAGCTAGACAGAG 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996 2 1 2 140 4 113953122 113953631 AATCCCATCTGCTTCGAGAG 60 113952860 113952878 TGAGGACAGTCCAAAGCAG 60 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 2 2 2 80 2 188670193 188670803 CAGAAGTGCTTCAGACTGG 58 188670131 188670152 GAAGCTCCAGGATATGATTCTC 58 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887 2 1 2 87 4 179498594 179498612 AGTAGACACGAAACAGGCT 59 179486810 179498543 GTCAACACCCTGTCTTGTC 58 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655 1 1 4 80 14 22520088 22520109 CCCAACATTACCAAATGTTGAC 59 22520147 22521149 AAGTCTTCTATATCCTTGGGCA 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 3 2 4 98 14 22379888 22529789 GGTTCTTTGGAAATTTGATGGC 59 22529847 22532487 TTTGGATGACCAAGGAGGTC 60 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809 2 2 3 131 17 43665869 43665887 AAGATGGAGTGGGAAGAGC 59 43665981 43666938 CAAAGTAGGCACTTGCTGTC 60 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501 1 1 2 91 4 22970355 22970373 GGAATAATTGCTGGCACCA 59 22975179 22980089 GGTAACTGTCTCTGTTCTCG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909 1 1 2 80 X 104767997 104768714 CAGCTTTGTCAAGGGATACC 59 104767936 104767957 TTCAAGGTCTTCTTCATCACAG 58 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002 1 1 2 80 9 60921464 60921482 AACTGGAAGCATCAATGCA 58 60921523 60922006 CTGATTTATTAACCTGCTCCCT 58 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 2 2 2 80 11 67102107 67104169 CAGTGATCGCCAACTTCAG 59 67104211 67104231 AGCAGGTCAAATTTATGCCAG 59 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129 1 1 2 80 11 67082201 67082221 CGTCAAGACATGTGTAACCTG 59 67094345 67101789 GGAACAGCATCTGAGAGCA 60 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 1 2 3 80 20 13966589 13966607 CATGATGGGCGGTAAAGAC 59 13966648 13966868 TCCTTAAACCTGCAAATGACAC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 3 3 3 80 20 2205231 2205626 ATAAGACAGTAAGCGTCACC 58 2205170 2205188 AGGTAATGCACTTCCAGTC 57 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000080386 2 1 2 80 X 104488528 104488546 CTCGGTTTCTCCCATTAGC 58 104487783 104488485 TACTCAGCGATTCTCTTTCC 57 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000004017 3 1 4 148 5 116705257 116705276 CAACCACATCAACAGAAGGC 60 116720813 116749860 CAGGTACCAGGACTGTGTC 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000035976 2 1 5 100 5 101906855 101906873 GAATGACTTCACCCTGCAG 59 101906937 101909704 CTACATTCCACTGGCATGC 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000083125 2 1 4 89 10 1459124 1459142 ATGGACCCTCAGTAACAGC 59 1457972 1459071 AGTCCATGGAATGCATTGC 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 2 4 4 80 10 1392276 1392294 CATGTTCTCCATGTGACCT 57 1385540 1392232 CTGAATGTTACCAAAGGCG 57 NA Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 1 1 1 82 20 6194094 6194115 CAATCACAGGATGATTCAAGAG 57 6193128 6193146 CTCTCATGAACATGAGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 2 1 1 83 20 6194094 6194115 CAATCACAGGATGATTCAAGAG 57 6193127 6193145 CCTCTCATGAACATGAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645 3 1 2 80 4 136816367 136816393 CCAAAGCATCTATTTCCAAAGG 58 136844763 136844782 TCTTAAGGCTACCATCCTCC 58 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000080811 1 1 2 80 4 8178037 8178055 CTAGGCAGTATCCCAAGGC 60 8178097 8178475 CAATGCTATGTGATCTCTGCG 60 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313 1 1 4 82 2 8939052 8939580 TATGCAGTGAGTTGGGACTC 60 8938989 8939007 ATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000084295 2 1 4 82 2 9472246 9472372 ACACATTCAAGGATGGTCTC 58 9472183 9472202 ATTTCTGCTTCTCCACAGAC 58 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 1 2 2 91 9 100923719 100923738 CTATGAGACTGGGACGTTCC 60 100922033 100923665 AAGCATCAACCACCTTCCA 60 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286 1 1 2 98 10 105752612 105752630 CTTTAAGTACAGCCCTGGG 58 105745373 105752552 AGCTGTTCTTTCTGAACTCTC 58 NA Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 2 2 2 81 13 47908018 47914851 AGGCTAAATATTACCACTGAGC 58 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020204 1 1 7 129 17 57067668 57082576 TTGTTGTTCAAGCTGCCAC 60 57082669 57082687 TCTTCTGCTAGTTGCTGGG 59 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000084632 3 2 5 113 X 63807675 63807694 GGTATCTCTGAAACTGACGG 58 63807030 63807601 GTTATTAATCTTGCGGGTCCT 58 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000009084 1 1 2 169 7 29556609 29563282 GATCACTGCCAAGTCAGGT 60 29537543 29546227 TATTTCTTCCTCCTCTTCTTCCC 59 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 1 2 2 80 1 214180366 214180581 GATCCCACTATAGAGGACTCC 58 214180306 214180325 TGCTGTGTCTAAGATGTCCA 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000067422 3 1 4 82 7 143124239 143124986 GAAGGCAAGTGATGTGGAC 59 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076539 1 1 5 80 13 77940648 77940666 GCTCCGGCTAAGTTAGGAG 60 77940710 77942290 ATGACAGAGGAACTGCCTC 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000080846 2 1 2 80 20 18932172 18932190 GACCAGGATCTGAAGGAGC 60 18932231 18935492 AGAGTCACAAACTGAAATTGCC 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000 1 1 3 80 3 92715017 92715036 CTTTGGAGAAACTGAAGGGA 58 92712417 92714974 GATGAGTCTCCATCACCTG 57 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 1 2 2 82 3 22642329 22643276 AAGAAGACTACTACAGGCGG 59 22643321 22643339 ACGCATCACCATCTCTGAG 60 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299 2 2 3 188 13 52629403 52631325 GAGAGGAAATCTAAGATCACTGC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 3 3 3 80 7 141066712 141067355 GGATTACATCTGGCACTGC 59 141067399 141067417 TTGAAGGCCAAGATCAGCA 60 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000090009 1 1 2 86 15 84446993 84477269 TGGCAAAGCACAAATGGAG 59 84446925 84446943 AAGGTCACATTTGGCAGGT 60 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000049391 2 1 2 80 17 63849353 63849374 TTCCAAGTGTTTGTCTGATGAG 59 63838767 63849315 TTCTTAATGCTCCTGCAAACTG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 1 2 5 80 1 79685410 79685429 TCTACACCCTACGAACTCTG 58 79684584 79685367 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000037848 1 1 3 80 4 125718431 125724885 AAACCGACTTCCAGATTACC 58 125718370 125718389 CCACCCAGAATCCTAAATCC 58 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 3 2 2 80 1 259063844 259065491 CCATACAGCTGGTAAACACC 59 259063783 259063801 CTCGAGGGATGATCAGGTC 59 NA Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 1 2 2 82 12 19434587 19434605 TTAGTGGGTCACTCGAGTG 59 19433821 19434541 TGGTCAGTCACATTCCCAG 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000086635 1 1 2 80 5 102641810 102680621 AATGTCCCAACAGGTTCCA 59 102641748 102641766 TGGTCTATCTCCTCCAGGT 59 NA Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 2 1 1 66 12 12330327 12330345 TATCCTGCCAACTCCATCG 59 12322624 12322643 AGTATTCCAGGACACCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677 2 1 2 95 4 79022007 79025375 GTACCGGAGAATTGTTGGTG 59 79025432 79025451 TGTAAACGCATGGGTAAGAC 58 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 2 2 2 80 3 93632297 93635545 ACAATGGATGACCAGGGTC 59 93635589 93635607 ATCGATGAGCATCTGGACC 59 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 2 1 1 60 12 13734615 13734634 CTACTGCAGAAGGACTACCA 59 13736179 13736197 CAATCTCCTTCACCAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 1 4 7 80 15 5415189 5416581 TTTGAACTACAGGCTGAGTG 58 5415128 5415149 GTCATCTTATGCATATCCATCG 57 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 3 4 7 82 15 5415189 5416582 GTTTGAACTACAGGCTGAGTG 59 5415127 5415149 GGTCATCTTATGCATATCCATCG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 1 7 7 83 15 5464664 5508849 TTGAACTACAGGCTGAGTG 57 5464599 5464620 GTTGGTCATCTTATGCATATCC 57 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000051009 3 1 2 101 2 233616235 233617121 AGTCGCAGAGAAAGATAAGG 57 233617185 233617203 GTAAAGTGAGTCCTCTGCC 58 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 1 2 2 80 17 54036108 54036128 CTTGCCTCATGAATTCATGGA 59 54035537 54036066 AATAGTGCATCGCCTTCCT 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078991,ENSRNOT00000012622 3 2 3 80 4 99814670 99816460 ATATACCGTGCTTAATGCCC 58 99814609 99814628 GTTTGACTCGTTCCTTCAGG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880 1 1 2 80 1 212715826 212715846 CCTGATTGATGTGAACTTCCT 58 212715886 212716229 GAGTAAGTGCTGGAATCTGTG 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394 1 1 2 80 8 97568073 97568091 CTGAAATCCCGTGCTACCA 60 97568135 97568455 CACATGTCACAGAGCACTG 59 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313 3 1 2 84 13 105071381 105123696 TCTGTGGGTACCTTGATGC 59 105071315 105071336 TTCTCCATTGTTGAGACATCGA 60 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191 1 1 2 94 4 85561762 85561780 GACCATTCATTGGGAGTGC 59 85561837 85569094 CCTAGGAATCTTCATGCGGT 60 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 1 2 2 87 10 104455970 104455989 GCTGAAACTGAAAGAACTCC 57 104456039 104456439 CATCAGGACAGTAGCTGTG 58 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000076990 2 1 3 140 13 77958838 77958856 GGTATCCTCAGCTCTTCCC 59 77954861 77958734 TCTTTCTGCAACACGATCC 58 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261 3 1 2 82 1 84640145 84640164 GATGCTACTCAGAAGGTCCT 59 84640209 84642223 GAAATGCAACTTCCCACCA 59 NA Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000088917 2 1 3 89 6 106159520 106162220 TACAGCAGTAAGGACTCCTC 58 106162269 106162290 CTTCTTCAAATCTTCTCGAAGC 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040 2 1 6 80 5 48034346 48034842 CAATTCACGGGATTCTATCTTGG 60 48034881 48034900 ATGTAGGATCGGATTTCGGG 60 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 2 2 8 156 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979763 1979782 TAAGCTTGAGCTCGTAGTCC 59 NA InUTR Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 2 2 2 80 7 143387081 143388137 GTGCTGAAGAAGGATGTGG 59 143387019 143387039 GATGTCATCTGTCATGGAGTC 58 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022068 2 1 2 107 1 48274077 48282118 CATCGTCACTGAGGTTTGG 59 48282186 48282207 GCAACATGGATGTATAGTCTGG 59 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022068 3 1 2 108 1 48274077 48282118 CATCGTCACTGAGGTTTGG 59 48282187 48282208 AGCAACATGGATGTATAGTCTG 58 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000082723 1 1 5 80 4 140514166 140514184 TCGATATCATCACAGCCCT 58 140514225 140516562 TCCTCAGTTCTAAATACAGGTC 57 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000082723 3 1 5 80 4 140514159 140514180 AATGGCATCGATATCATCACAG 59 140514218 140515347 TTCTAAATACAGGTCCATCCGT 59 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866 1 1 2 80 12 16107019 16107037 TGCCAATTTCCAGAATCCC 58 16107081 16109722 ATGCTGGAGGTGTATGAGG 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 3 2 3 89 1 88586427 88587090 CATCTCGGTGGGATTTCAC 58 88587143 88587161 CTTGGGAACATTCGCTCTG 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 3 2 2 124 19 52181093 52193768 CTGAAGTTTGCTGAATCCGA 59 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 1 2 2 80 1 72775294 72775448 TGGATCTGGTAAACACTCAC 57 72775491 72775509 CCTCAGGGAAGTTGAACTC 58 NA Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 2 1 1 86 3 8657951 8657969 TGCTCTATCTGGCTGTGTC 59 8657523 8657541 CTGTCTGTTCCTCCTTCGG 60 NA DesignNoJunction Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000074985 2 1 2 85 1 81343479 81343500 AAGAGACGTCCTCATTGACTG 60 81344478 81344496 TGTAACTCCGGTTTCCCAG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 2 4 4 94 1 51027230 51048081 TTACTGGTACCTGCAGCTG 59 51048139 51048157 ATGTTGGCGTCTCTGTAGG 60 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000086297 2 1 2 93 4 116580362 116580511 AATTGTAGGGAACATCATCTGG 58 116580290 116580308 TCTGTGCAGTTCAAGATGG 58 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000092203 1 1 2 80 10 61232323 61232682 GCATTGAAGAGGTTGTGGAG 59 61232262 61232280 GGTCCTCAATCCAGTAGCC 60 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000013122 2 1 2 80 7 143400349 143400370 GTGCAAGTGAATTTAAGGAGGT 59 143400287 143400308 GCCTATCAGCTCTCATGGT 59 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 2 1 1 61 7 15483360 15483381 GTAGGTGAAGGTTAAGTTTCCA 58 15482953 15482971 GCTGTAATTGGTGAATGCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000083127 3 1 2 80 4 130332293 130342635 AGCTTGTATCTCAGTTCTGCA 60 130342674 130342695 CAAGATGCGTGATGTCATAGTG 60 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000091273 2 1 2 102 3 153441412 153441430 CAACATGTTCCAGACCCTG 59 153441493 153441611 GTGAATCATTCTCTTAACTGCC 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000016468 1 2 3 80 14 85965403 85967752 CAATTGCAGATTTGGAATGGAG 59 85965009 85965027 CCTGAGCCTCATTTGTACC 58 NA Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 3 2 2 80 3 176546370 176546390 AGCCAATATCTCAGATGTGGT 59 176542925 176546329 ATCTGGTTCTTCTCGTCCAC 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000077458 1 1 3 81 6 108502109 108502130 AACTTCAGCCCACTATATCCC 59 108501742 108501760 AGGATGCCACATTCCTCAG 60 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255 3 1 2 86 15 4883083 4883968 CAACTGCAAAGATGAAACAGAG 59 4884011 4884033 CCTCTGTCTTCAATCTTGTAGTG 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687 2 1 2 87 15 12873163 12873181 ACTCGTTACTGGGCATCAG 60 12872624 12873117 CTTCCTGAAACTGGTACATAAGTG 60 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 3 2 2 84 18 56637974 56637992 AGATGAAGATCCAAGCTGC 58 56636600 56637174 AAGAGGGTCACTTTGTGAC 57 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 2 3 3 81 16 20112540 20112558 TTTCTTCTGCAAGGAGGTG 58 20112602 20112706 AAAGTCTAACGTGATGGGTC 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000071939 2 1 2 80 20 9327899 9327963 AGGAGGGATCAGTTAAGAGC 59 9328458 9328477 TATCTCCACTACCTGATGGG 58 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000082161 1 1 4 88 4 15741019 15742420 TCAGGCCAGATCAGAACAG 59 15740435 15740455 GTGCTATGAAAGTGTAGCCAG 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000082161 2 1 4 89 4 15740480 15741013 GTGTGCCTATTCAGAAACCC 59 15735801 15735821 TTCAGGTCATTGCAGTATTCC 58 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 1 2 2 84 10 74099700 74099724 CATATTTGGATCCACCTAATGAGAG 59 74097088 74099659 TGACCACTCCTGTCAATAGC 60 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 3 1 1 60 20 2485230 2485249 ACTTGGAAAGGAGACATTGC 59 2485794 2485812 ACTTGGTGGGTCAGATGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536 3 1 3 90 18 47606870 47606888 TAGAAAGGAAAGGCGGTCC 59 47606940 47630834 CTTATCATCGTTGGCTTGTCC 60 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000050372 3 1 2 80 6 67083658 67084036 GTTAAGTGAAGAAGACGGCC 59 67083597 67083619 CCTCCCTTCCCAATTATAGATCC 60 NA Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 1 1 1 96 1 7305885 7305903 ACAGCAACAACAGCAACAG 60 7313098 7313116 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 1 1 1 60 13 42262671 42262689 GGATTGTTCTGGCTTCCAG 59 42261321 42261341 GAAATTCTTCACACTGGTAGC 57 NA DesignNoJunction Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 3 3 3 82 11 81631771 81631789 TCGACAAGTACAAAGCGGA 59 81625154 81631729 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 3 2 3 80 5 173257587 173257817 ACATTCCATGGAGCATGTG 58 173257859 173257879 ACATCTCTGATTCGTCTTGGA 59 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 2 2 3 92 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038991 100040213 TTTGTAAGGTCATGTCTCGAG 58 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 1 2 3 91 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038991 100040212 TTGTAAGGTCATGTCTCGAG 57 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078 1 1 2 112 18 63366539 63366557 ATAATCTGTTGCCGTGGAG 58 63360455 63366464 TAAGAGGCACATTCACAAGC 59 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 1 3 3 80 15 12582224 12582334 GAAAGTGTTGAAGATAAGCTGG 58 12582374 12582393 TGTCTGTTGAAGTTCATGGA 57 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 3 3 3 80 15 12582388 12583429 CAGACATTGGAGAATGACGAC 59 12583471 12583489 CTATGGCTTAGGGTCTGCC 60 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000036993 2 1 3 95 2 243665737 243666853 GAATAAAGATGGTGGCCACAG 59 243666910 243666928 CATGGCCCATAATCATGGG 58 NA Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 3 2 2 80 16 6070159 6070179 CCTTGGAAACAGATACATGGT 58 6069757 6070117 CTCGTCAGTTTGTTCTCCA 57 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 2 3 3 80 1 192467134 192467152 AGCAGGAATGACTTCATGG 58 192467196 192477522 TAACTTGAACCAGCCATCC 57 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000019969 3 1 6 100 4 154706136 154708451 ACTATCAGCACCTGCTGTG 60 154708514 154708533 GTGGCTCTTTAGGTAGTGGA 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000071067 3 1 3 80 12 24606685 24606706 TGGAGAATCTACTACAAGAAGC 57 24605885 24606267 ACAACCATATACCTGCTTGG 58 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000020427 2 1 3 87 16 3674865 3674886 GAATGCAACAAACTAGAAGCAC 59 3679149 3679175 CGGGAATGTTATGACTTACTGG 59 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000076176 2 1 3 80 X 70331007 70331026 CCTTGCTTTGTAGTCTGAGG 58 70331068 70331198 TGCTTGTATCTTGGAAGTCG 58 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000046388 1 1 3 80 10 65588165 65588279 GCATCAAGGTTGACAAGGG 59 65589385 65589403 GTCCGTAGGAGAAGGTGAG 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000086036 1 2 3 80 10 65588747 65589005 GTTTGTTACAGAGAAGGTCCTG 59 65589046 65589064 TTGAGGAGAGTCCCTTCCA 60 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000086036 3 2 3 81 10 65588746 65589004 AGTTTGTTACAGAGAAGGTCCT 59 65589046 65589064 TTGAGGAGAGTCCCTTCCA 60 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000044161 3 1 2 133 13 112079570 112079588 GATACACCTGCGAGAAAGC 59 112076760 112078006 GACTTGAAGTTCCCTCCAC 58 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 2 2 2 118 7 75578735 75579367 CAAGAAAGGAATTGTGGACCA 59 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 1 2 3 82 12 17753014 17753032 GTTAGAGGAGCACCTGGAG 59 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000057718 1 1 4 116 X 71963095 71963407 AGTTTGTATTGATGCCTGCA 58 71963486 71963504 TCCAGGCAATTTGCTTGTC 59 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000010933 3 1 2 80 5 117590840 117591420 CTAAGTCCATAAACAAAGGTGC 58 117591461 117591479 TCCTCAGTACTAGCTGACC 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000084151 3 1 2 87 10 4568045 4571097 GCCTTTACAGTTTGATCTATGC 58 4571144 4571163 CTCAGGACTATGAGCAAAGG 58 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000041988 1 1 2 81 4 82816415 82816434 GCTAGAGGACAGTTACAGTG 58 82816475 82820399 TGTAAGTTCACTGTAACTGTCC 58 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000027574 2 1 2 86 1 267143237 267143255 TTTCGGTTCTTTGAGGCAC 59 267098852 267122323 GGATAACCACACTGATTTCCTC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 1 2 3 80 4 33640463 33640481 TCTTCTTCAGAGAATCGCC 57 33640525 33640981 ATTGAGGAATCAGCATCCC 57 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936 2 1 2 80 1 47964768 47966417 AAAGCAGTCAGGATGAACTG 58 47966459 47966478 GAACTAGAATGGTGCTCTGC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000085031 1 1 4 80 6 109673390 109673411 ATCATGACTCTGAGTGCTATGG 60 109673449 109674064 CAAACCAGTGATGAATACTATCCAC 60 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 1 2 2 80 1 162871797 162871817 CCTTAACAGATGTGGTGACAG 59 162871857 162875025 CCAAAGCTTGTAGACACTCTC 59 NA Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 2 2 2 80 13 95208262 95208283 TATCAGATGTCTTCAGTGGACC 59 95196388 95208224 TCTGTCCATTCTTCTCTTTCCT 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688 2 1 2 80 4 76852059 76908450 GACCATAATTCTCAAGCTCGAC 59 76908488 76908509 GGAGAATTGAAGATCGTGTCAG 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 2 2 2 80 19 52240451 52240469 AGTGGAAGATGCAGACCTG 59 52240512 52242700 GGAGATGTGACCTCTTCAGG 60 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 1 2 2 80 7 143692856 143692970 CTATGACCGAGGCTATGACTC 60 143693012 143693030 CTGTAGTCGTCATCCCTCC 59 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386 2 1 2 80 4 179904689 179904709 CTTCTGGGTACCTGTTATGCA 60 179830716 179904648 CCTGGATACCCAGAAGACTG 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000010367 3 1 2 81 X 127804022 127804043 GATGAAAGTTGGTGGAAATCTG 58 127804083 127819761 GTTTACAGGCGTTCTTAATGC 58 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 3 3 4 82 18 6777414 6777432 ACTGATGTTACTGGTTCCG 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057 3 1 2 99 19 45073439 45074097 GAATAGAATTACGCTCACCCA 58 45074158 45074176 TTGTCATTGAAGTGGGTGG 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000022574 1 3 4 80 5 152683458 152683478 AGAAGAAGGATCTTTCCCTGG 59 152683518 152685797 CTTCTGCTTCATGAGACTTGC 60 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 2 2 2 80 3 173867266 173868468 AACCAGGAAGCTTAACCAG 57 173868511 173868530 TCCACATAGTCACTGAAACG 58 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 2 2 2 81 18 71525019 71698549 TGCTCCAGAAGGACTTCAC 59 71524956 71524974 CACAGGAAGGTGATGAAGC 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025700 2 1 4 107 17 70703392 70703410 CACAGTCCTGAAACTGACG 59 70703584 70711170 CTCCTCATGTTCTCTGACCT 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082 1 1 7 80 X 70636783 70636803 GGGATGATTGAGTCTAATCGG 58 70639520 70642427 ATCCTCTTGTCCTTTCAGGT 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082 3 1 7 81 X 70636781 70636802 CAGGGATGATTGAGTCTAATCG 59 70639520 70642426 TCCTCTTGTCCTTTCAGGT 58 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 2 2 2 80 1 100892388 100892406 TGGATGTGCAACTGAACTC 58 100892450 100892659 CAATGAGGGTGATGCTGTC 59 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000015775 1 1 2 87 3 94356947 94357461 CAGAACAGGAGTAATTCATTGC 58 94356881 94356900 CCTCAACTTCTTTCCCACTG 59 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000035821,ENSRNOT00000085599 2 3 4 80 2 57868678 57871000 GATAATGTGGTATGCACCTCTG 59 57868619 57868639 CCAATCACACCCATATCTTCC 59 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 1 2 2 75 4 82159734 82159752 GAAGAAGATCCACGTGAGC 58 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 3 2 2 80 7 123047241 123052963 CAGCACAGAATCATCCTTGG 59 123053005 123053024 AAGTTCACATCAACCTCCAC 58 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203 2 1 2 80 18 70972769 70975403 GAAGAAATTGAAGAAACGGGC 59 70975444 70975463 TTTGAACTCAGGACCTCTGG 59 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251 3 1 2 80 8 5985288 5985588 CTTCCTTTGTTGACAGCAGG 60 5993972 5993991 GCTAATCTGACTGGTCTGGT 59 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 1 2 2 80 11 74769610 74769629 AGGAGAACAAAGAGTTGAGG 57 74765351 74769569 TCAGAGATTTCTTGAGCTTCC 58 NA Rattus norvegicus 81 Opa1 ENSRNOG00000001717 ENSRNOT00000002343,ENSRNOT00000002338 2 2 2 80 11 74765354 74769572 ACAGGAAGCTCAAGAAATCTC 58 74765294 74765315 TATTGTAGCTGGCATCATAGTC 58 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 1 3 8 80 4 8194328 8194475 AATCAAGAGGGATATGACCGA 59 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 2 3 3 80 10 47108738 47108756 CCCTGGCTACATCCATACC 59 47108798 47110668 GTGTTCTTGTCTAGAGCTCCA 60 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837 3 1 2 95 7 123101160 123101807 TGGTGTAGCTATCGGAAGAC 59 123100582 123100600 TCACATATGCGAACCAGGG 60 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754 1 1 2 86 1 7371237 7371256 TGTGGAAGTCACAGATTCCC 60 7364149 7371188 CTTATTGCTGCCTTGTCCG 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282 2 1 2 111 17 69391757 69392419 TGTGTCTGTCAACTAAATGGG 58 69388584 69391686 CCTTCAAATATTCCACCAGCT 58 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215 3 1 2 142 6 111176931 111180590 GGAAGCCTGTTCTCTATTCCT 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 2 1 1 97 6 98605992 98606011 TAAACCCTGAGGTCAGACTC 59 98601623 98601643 ACTGGTCCTTAATCTTCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322 1 1 2 150 1 84147763 84147781 GGTATCCCTCAACTGGCAG 60 84142698 84147226 CAAGGGACATAGAACCCGG 60 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345 2 1 2 84 5 160124243 160129232 GTTACCGTTGTGAGGACTG 58 160124177 160124196 CAGAAGAGGTGGTCATTCAG 58 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 2 2 2 85 14 18660373 18680877 TAGTGGCTGCAGGTATTCC 59 18660306 18660324 TACGTAGTTGATGCCCACG 60 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 1 2 2 80 16 6877766 6877785 GAAGAAGTGAGCATAGCCAC 59 6877825 6878779 TACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091285 1 1 10 88 7 117253867 117287886 GTACAAAGATGAACGAGACCG 59 117253490 117253508 CACTGATGTGCCTTTGAGC 60 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 3 2 2 80 20 29365566 29366420 GTTTGAGCAGGTTCAAAGC 58 29366464 29366482 GTGTTCCCAGTAGTTGGAC 58 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000065632 2 1 3 165 1 260552335 260557892 TTTCTAAAGAGCCGCTTGTG 59 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000023090 3 1 2 80 1 188096854 188101165 TACATCCAGTTGGAACCAC 57 188096203 188096221 GTGTTGACAAGTCCATCCA 58 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 3 2 5 82 9 43821827 43821848 CGAGACAACTTTCAGTAAAGGA 59 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000002376 2 1 2 86 11 83892397 83892415 CAACATGGAATCAGCAGGC 60 83892464 83892885 TCTGAGTCACTTTCTGACGT 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 1 2 2 92 4 181346953 181347347 GAAGTTGTGGAGATAAGCCAG 59 181346881 181346899 TCTGTGTAAGTGGGAAGCG 60 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 2 2 3 80 9 10467472 10470828 TTAAGAAGGCCATTGAAGAGGA 60 10467413 10467433 TCTTAGGCATCTTCTTGTTGC 59 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509 1 2 3 80 6 122730320 122735625 TTACGTGGATGAAGAACTTCCT 60 122735665 122735684 AGGTCCTCTGTCATTTGGTC 60 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509 3 2 3 80 6 122738888 122739804 GTTCTGTTACAACTGAGCCC 59 122739847 122739865 TGCTCTTGTTTGAAGGCAC 59 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 3 2 2 80 X 72686382 72686542 TCCAAGTCAGGGAACAAGG 59 72686586 72686604 GGCGTCTCTTTATTGGTGC 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000090540 1 1 2 80 2 84523001 84523021 TGCATTGGATCCAGAATTCTC 59 84522079 84522961 CTTCCTGAGATAATCGACGTG 58 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 3 2 2 82 8 50223420 50223761 TTTATGAAGAAAGCCCAGGAG 58 50223358 50223376 ATTTGAAGGCCAATGACGT 58 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000041994 2 1 4 83 16 23553675 23555931 GCTGTTGTTATGGCTATTGC 58 23555977 23555995 CCAGAATTTCAGTGCTCCC 59 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 1 2 2 80 X 110689439 110692686 GAGCCATATCAGACCTATTTGG 59 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 3 1 2 60 3 55466635 55466655 CCTCTTCCTGTTTGCATTCAC 60 55466733 55466751 CAACAGGGCAATACCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005 3 1 3 120 19 53496530 53496549 GTAACTGTGTCCCTCCTCTC 59 53496029 53496448 ATGAAGAGTCCATCCACCAC 60 NA Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 2 2 2 80 1 214011918 214011936 GTTGTCATGGTGACTGGAG 58 214011980 214012287 CAGGATGAAGTACAAGCGT 58 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 1 3 3 85 9 12476114 12476132 AGTGTCAATTCGAGAGGGA 58 12476181 12586287 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 1 2 2 80 18 76707447 76707466 CAAACCCTGAGAAATGTTCC 57 76705401 76707405 CAGTAACCGATCTACCTCAG 57 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 3 2 2 82 16 20694963 20694981 TCTCCGTCCTGATCATCCT 60 20695025 20695163 AGTTAGAGGCTGGAACTTGAG 60 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 1 2 2 80 2 195744536 195744554 GTTATCACAGCCATCAGCA 58 195744012 195744492 CGCTATTACCTGGTTCTCC 57 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 1 2 2 80 19 55403429 55404126 CACATCATAGACAGGCCCA 59 55403367 55403385 GAGGTGTGCTTTGTACTGG 59 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000078477 3 1 2 88 1 104636227 104696213 CATGAAGCTGATCTACACGG 59 104696264 104696282 TCACATCTTGCTGGAGGTC 59 NA Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 1 2 2 80 8 13865015 13865033 CTTTGACAGCCGTAGACAC 59 13865076 13865406 GCTTCATCTTCAGTTGACGG 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 1 2 3 80 7 70980740 71069218 AGTTGGGAACAGAGGACTC 59 71069261 71069280 TTGTTCATCCACTCATTGGG 58 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053 3 1 2 96 10 46579434 46592848 GACATCGAAGACATGCTTCAG 60 46579358 46579376 CTGTGTCTCCTGTCTCACC 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 3 3 10 82 9 95246249 95298733 CTGTCTCAGGAATTTGAAGCC 59 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 4 6 81 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566951 3566969 GCTCTGCCTGAAATCATCC 59 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 1 2 2 80 5 147825163 147825181 ACGTCTATGAGATGGAGGG 58 147824994 147825119 ATTCTTTCCCAAAGGCCTG 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428 1 1 4 80 7 124223892 124225790 GAAGATGAACAGGGTCCCA 59 124223830 124223849 TTAGCTGATCCCAATGGGAG 59 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000077163 3 1 2 80 8 71019323 71019341 CACCTTAAGACAGGAGGCA 59 71019384 71021698 CTGCAGCAAATGTATCTGCA 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 3 2 4 120 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738393 79738414 GATCTGCAGGCTTTATTGTCTC 60 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000079845 1 1 2 80 1 15716569 15716588 CCGAAGCAGAAGTATAACCG 59 15716631 15720744 CCTGTCTGGATCTCCACTG 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 2 2 8 80 6 64838568 64838587 TATGCACAAACATCAGTGGG 59 64838629 64839962 TGGAAGAATACCAGCTTCGT 59 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 2 2 2 100 18 35781590 35781608 TATGAGGAGCGCATCACAG 60 35762724 35781528 GAGTACTCATCTTCCTCCCTG 59 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000042677 1 1 3 80 12 21061736 21077349 TGTCAGTCCACGGATTACC 59 21061674 21061693 GGGTTTCTGTTGATCTCGTC 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000004776 2 1 3 85 14 21127747 21127766 ATGGATGGAGAATGGCTCTG 60 21103514 21127704 TAATTAGGATCTTCATGGGTAGGC 60 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925 2 1 2 83 12 17010877 17010895 GTCCCACTTCTCAGGAAGG 59 17010940 17011554 GTTCTAGAGCCCTCTTATCCA 59 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925 3 1 2 83 12 17010877 17010895 GTCCCACTTCTCAGGAAGG 59 17010939 17011554 GTTCTAGAGCCCTCTTATCCAC 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 3 2 2 108 2 54819098 54823567 TTAAAGCAGGAAGTTCCACG 59 54819009 54819028 AGAGCTCTGCTATTTCTGGG 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025 3 1 5 115 1 15844718 15844909 TCAGAACAAACCTTACCCAC 58 15844987 15845005 GTTCTGACTTAGAGCAGGG 57 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000042281 1 2 4 80 8 53879398 53883723 AGCAAGAGACTCTAGATGGG 58 53879337 53879356 TGTACTGGATGCTCTTCAGG 59 NA Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 2 2 2 88 1 36304885 36307703 TGGAGAAGAGTGAAGGTGC 59 36304815 36304833 CTTCCACTGTGAGACTCCA 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000082482 3 1 4 94 1 226791118 226791730 GAACACTGGGTGACTTGTG 59 226779517 226779535 TAGACCCTGACACTTGGAG 58 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 1 2 7 88 2 186122531 186122551 AGCACTTTAATAATGCGCTCC 60 186117950 186119088 TCTAGAGCCGTGTTCATGG 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 2 2 7 89 2 186122532 186122552 CAGCACTTTAATAATGCGCTC 58 186117950 186119088 TCTAGAGCCGTGTTCATGG 59 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000077701 1 1 2 80 19 55936768 55936787 ATAGCAGAGGACATCTCTGG 58 55936829 55937688 GAAGAGGTCCTTGTCATCCA 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664,ENSRNOT00000005853 1 3 3 80 13 47586403 47586422 TTCTACTGGTGTCTTACCGA 58 47586464 47587018 TGGCTTCTTTGTAGCTTCAG 58 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822 3 1 2 80 9 92381008 92404988 ACTCAATAGGAGGAAGAAGCT 58 92380948 92380967 AAGTATTGGCTCTGTCTGGA 59 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000018153 2 1 2 164 1 92091148 92091276 CAAAGTGGCAGAGTTCTGG 59 92091002 92091021 CAGTTTCTCAAGTTCGCTGG 60 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900 1 1 4 87 13 80429848 80429866 GGGAATGAGTTGTCCTCCC 60 80420092 80429797 ACACATATGCCCTTCACGA 59 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354 2 1 3 60 9 81562807 81562825 CCTCTGGTTATCCATGCCT 59 81562765 81562785 ACCATCTTCATACCCTACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 1 2 2 80 10 27142650 27145086 CTCCAGTTATGGTTATCCTCGT 60 27142591 27142609 CATGACCTTGTGTCTCCCA 59 NA Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 1 1 1 60 17 70045333 70045351 GATGCAGACCAAGATGGGA 60 70041939 70041959 GCCAGGTAATGTCTTTGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 1 1 1 121 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162423282 162423300 GATGTTTCATCAGGGTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000021458 2 1 2 81 2 244287539 244330136 ATATGCTATGATAGCCATTCCC 58 244287479 244287497 GGATGCCCAGTAACTTCAC 58 NA Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 2 2 2 83 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054406 14054425 TTCTCTTGGAGTGAGGAGTG 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000020556 3 1 3 80 3 154905296 154905315 TCTTCAGTGGCTGTAAGTG 57 154910628 154910649 CAGTCCATAGCAAATTACTTCC 57 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100 3 1 5 171 3 2264992 2266785 CTATGCAAGCGAACTTCCG 59 2267916 2267934 GAGCTCTGTAGGTCACTGC 60 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 2 3 3 80 6 127611483 127612376 CAAACAAGGTCAGCCATTCTC 60 127611423 127611441 CAGTGAGCTCAGGAGTGTC 60 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 3 2 2 123 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667143 51667162 CTTCCTCTGTAGACTCCTCC 58 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000018170 3 1 2 89 4 100298285 100298306 TGGTACTTCTCAGAAGAGTGAG 59 100297644 100298236 TCCAGATCCCTGACAATGAC 59 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000074991 1 1 2 80 19 118786 118928 GACCAAGAAGGTTACACTCC 58 118204 118223 TGTGTTCAAGTCCAACTCTC 58 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000063875 3 1 2 83 20 30840342 30840360 CTTTCATTGGTCTCGCTGC 60 30839343 30840298 AATTGTAGGATAGGAGGTAGCG 59 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000084613 2 1 2 175 18 1203162 1208835 AAATATGGAGTTGCCGTGTG 59 1195749 1196547 CTCTAAGAGCTGCAGTAATATACTG 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 1 2 2 97 2 189893198 189896028 TTAAGCAGAGCTTAAAGCAGC 59 189893121 189893139 TCTTCCTCCAATTGCTCCC 59 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000072262 1 1 2 80 6 95060723 95060744 GATCTGTCACTCCTTCTTCTG 58 95053786 95053804 TCAACTCATCCTCGGAGAC 59 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 3 2 2 94 3 119676287 119676306 GAATGAGGTCAAGTCAGTGG 58 119676112 119676231 CTTCATCAACTTCCCAGACC 58 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 3 2 3 80 6 129643813 129646856 CAGACACAGTTTATAGGCAAGC 60 129646895 129646915 TTCTCTTCACATGCATTGCTG 60 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 1 2 3 80 6 129643811 129646853 CACAGACACAGTTTATAGGCA 58 129646895 129646913 CTCTTCACATGCATTGCTG 57 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 2 2 2 87 8 71728149 71728168 CAAGTAGAGGTGCTGTACAG 58 71727709 71728099 GTTTCTTGATCCGCTTGTG 57 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000057395 3 1 3 104 13 103253007 103253026 CGTACTGGTGCATATCAAGG 59 103249814 103251434 TAGCAGGTAATAAGTTGTGCC 58 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000080961 1 1 5 80 9 81662672 81662691 CATCAACCTCTTCGTCATGG 59 81662733 81662912 TAATTGACACCTGTCATCGC 58 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 3 2 2 81 X 71615838 71616846 TACCTTGAGGTCAGTGAACG 60 71615776 71615795 AATCGTAGGGAGATGTGCTG 60 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 2 2 2 80 1 198411418 198411930 ATCTGCACAGTTCTGTGGT 59 198411973 198411992 AGTAGATTCGAAGCACAGGG 60 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000086473 3 1 2 161 4 83714013 83746158 CTCAGTGATGTCCATGAGG 57 83746282 83751871 GACATCTGCCTTTCCATAGG 58 NA Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 1 1 1 73 6 126623040 126623058 AACTGAGTGACTCTTGCAC 58 126623484 126623502 CATTCTCCATGCTCTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000041418 1 1 3 110 9 111107829 111107847 TTCTACCCTGTGGAACACC 59 111107918 111108467 ATCTTTGAATCCGATATGGGTG 58 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000056457 2 1 3 82 9 111173235 111173253 CTGGTTATTCCTGTGCTGG 58 111173299 111176751 CTTCCCTTTCCTCCAAAGG 58 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000089801 3 1 2 81 2 189406003 189406021 ATCAAGTATGAACCGCAGC 58 189406066 189406696 TGTAGCAACTTTGACTCCC 57 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 2 3 3 122 12 22753562 22753581 AATGACGACATCCGTAGAGG 59 22751134 22751550 TTCATATTCCTTGAGCCGGT 59 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 1 2 3 82 12 22751092 22751110 ACTGTTACAGACTGAGCCC 59 22750797 22751048 CCAGTCCATCTTTCTTCATGG 59 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962 2 1 2 81 9 112008510 112012592 CTCTTCAGGAGGGAGAACAG 59 112008448 112008466 CTGCTGCTCTCATTGACCT 60 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000086957 2 1 2 145 8 53417367 53420422 GCAGCAACCCATATCTTTCAG 60 53420526 53420547 TGAAATATCCAAGACTCTGGCA 60 NA Rattus norvegicus 81 Txn2 ENSRNOG00000005614 ENSRNOT00000078528,ENSRNOT00000067483 1 2 2 87 7 119144993 119154125 GAGTACGAGGTGTCTGCTG 60 119144924 119144942 GGTCTTCGTCCTTGATCCC 60 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 1 2 2 80 1 147808340 147808358 GGACAGAGACAACAAGCAC 59 147808402 147811011 CCTGGACTTTAGCTGTGAC 58 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 1 1 1 60 7 75286742 75286762 GAAATTGGAGACCATGCAGAC 60 75281143 75281161 GAGCAGTGAATGGCTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 1 3 3 80 14 34748939 34756741 CATAATAGAAGGTGCCCAGGA 59 34756782 34756801 CAGAAGAACATGGCGATCAC 59 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 3 3 3 80 14 34757844 34759619 CTGTCAAGATGTTGAAAGAGGG 59 34759657 34759678 CAATGTGGATGAGGATCTTGAG 59 NA Rattus norvegicus 81 Mcts1 ENSRNOG00000002563 ENSRNOT00000080894,ENSRNOT00000066677 1 2 2 80 X 124895863 124895881 CCAGGTATTGAACCATGGC 59 124895923 124896426 TTCTATGTGTTCATGGCATCG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 3 3 8 82 6 128053948 128053968 TTAAGAAAGTCTTCTCCCAGC 58 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 1 4 8 84 6 128078985 128079007 CATCAAAGAAGTCTTCTCCACAC 60 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000077517 2 1 8 86 6 128050254 128050272 CCTTCATTGCAGCTTTGGG 60 128050321 128075367 GGAATAGAGTGTCCCTTCCC 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000083830 2 1 2 95 7 125940510 125947135 CTAGACAGGATTCACAGATGG 58 125947796 125947814 GTTGCTTCCTAATGAGGCT 58 NA Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043 1 1 2 111 6 52122158 52131594 ACTCGTACAAGGTTACTCAC 57 52131666 52131686 TTCACCTTCCTTACTTTGGAG 58 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000041140 3 1 2 114 10 71547070 71560739 GATGATGGACTGAAGGCAG 58 71560817 71560835 GGTTAGGGAAGTCATCTGC 58 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 1 2 2 80 4 85137764 85141234 CTCACGGTTATCAGACTCAG 58 85137703 85137723 TTTGTACTTGGTCAGTTCCTC 58 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 3 2 2 80 19 44064405 44065801 AAGTTAAGGTAGCAGAGGAGAC 59 44064346 44064370 CTTTAGGTTTCTCTAGTTCATCTGC 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000066381 1 1 2 200 7 66884663 66909280 GCATCTGAGATGATAAGGGC 58 66863063 66881561 GTAGACTCTGACCTCTGGAG 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550 1 1 3 89 5 159960634 159960652 GTACTTCCTGGTGGCTCTC 60 159960134 159960582 CACTTATGTGCTCTGACCAC 59 NA Rattus norvegicus 81 Zbtb49 ENSRNOG00000005633 ENSRNOT00000088600,ENSRNOT00000041639 1 2 2 108 14 77326630 77328658 CAGCCAGTATTTCAGGAGTC 58 77328729 77328747 CATGAAGTCCAGGATCTGC 58 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986 1 1 2 80 15 108316054 108317750 AACGACTTCCAGATTTGGAG 58 108317791 108317811 GAGAAGACCACTACAGAAAGC 59 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 3 2 3 100 19 10149369 10149671 TAGCCTTCAAGAGACCCAG 58 10150639 10150657 AACTCAACATCCAGGAGCT 59 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351 1 1 3 96 19 10171782 10171801 AGGAAGAGGAGAAGGAGGAG 60 10171860 10179133 TCTTTCGTGGCTGGTACTG 60 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879 2 1 2 80 14 36687236 36718161 CTGTAATATGGGCACCAATGC 60 36718200 36718221 CCGAAGTAGTGTTCATTGATCG 60 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253 3 1 2 85 2 259382752 259591903 AAAGACAGAGTCCAGTCTGG 59 259382686 259382704 ACGTGGATACTGTAGCAGG 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000079700 1 1 2 80 10 13771950 13773405 TACTGCAAGAAGTACAACATCC 59 13773446 13773464 GGAAGTCACAAACTTGCCA 59 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871 1 1 3 81 13 49353555 49354820 AGTACATCGACAGCAACCA 59 49353492 49353510 GGAAAGAGGTCTGTCAGCT 59 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 3 2 2 80 9 81832586 81832606 GTACACTGACCTCTCGTATCC 60 81832648 81835258 GTGGGTAGTCTGACGACTG 60 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 3 3 3 82 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 3 2 2 80 4 157483386 157483588 TGACTACTTAGCTGAAGCCAG 60 157483326 157483345 GTGACAACTGACAGATGTCG 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198 2 1 2 81 5 149047760 149060394 GCCATCTACCATATAGTCATGAG 58 149060435 149060453 ACCTGCAGGAGACTTTACC 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000083028 1 1 2 84 5 149056344 149060397 CTTACCTGGTCATGAGCGT 60 149060445 149060463 ATCTTGGAGAACCTGCAGG 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215 3 1 3 80 4 161731677 161731697 AGTCCACTAATCTTCTGAAGC 58 161731228 161731635 ACAAACAATCCACACCCAG 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 1 2 2 81 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712678 41712701 TGACTGGTAATATTCCTCTTCCTG 60 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000068199 3 1 2 81 3 63412286 63421102 CAACTGCAGGTTCCTTTCAG 60 63421145 63421164 ACTCAATGTCTGCACAAAGG 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211 3 1 2 81 3 63416319 63421097 GGTGGCTACAACAGTTCCT 60 63421141 63421160 AATGTCTGCACAAAGGTTGG 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 2 2 2 80 7 34636064 34636082 TGCACAATAAGAGTGAGCC 58 34636123 34641550 ATTCACATTTACCTGAGTGTCG 59 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 2 1 1 60 5 126092318 126092336 ATCACCTTGCTGTGGAGTC 60 126087279 126087297 ATGGCAGTCTCCTTAGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491 3 1 2 115 19 38091356 38111347 CACTTTAGATGATGTGAACGAG 57 38111423 38111441 TAACATCTGGAGACTCCGG 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 1 2 3 129 4 51930810 51936045 CTTTGGTTCCGGTAACTCC 58 51917546 51930720 GAGCAATAATCAGTTCCTTTGC 58 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000019245 2 1 2 81 1 114453822 114474840 AACAGATATCCAGATGATGGTG 58 114474879 114474900 CTTCCTCCTTCTTCTCTTTGTC 59 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000064249 2 1 2 80 2 260527625 260527645 TTTAGTGATTGGGTGATTGGC 59 260527686 260531759 TCTCCAGATCTTCACCTCCA 60 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 2 2 3 102 10 88413605 88418146 GATCCCTGCAAGGAAAGAG 58 88413521 88413539 TAGTCAAAGTCCAGCATGC 58 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 3 2 3 103 10 88413603 88418144 TCCCTGCAAGGAAAGAGTG 60 88413518 88413536 ACGTAGTCAAAGTCCAGCA 59 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 2 2 2 80 18 2071656 2071674 GGTTATACTGCCTTGCACC 59 2071718 2072126 GTTTGCATTTCCCTGATGC 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467 2 1 2 80 15 4155178 4156891 CAGTGAAGACTCAGGGAGG 59 4156933 4156953 TGTTTGTAGGGATAGCTCTCC 59 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388 1 1 2 80 1 80634236 80634405 AGGAACCAGAAATGCCCTC 60 80634174 80634193 CAGCATCAAAGTATGGCGTC 60 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 3 2 4 134 2 118563058 118563076 ACTGTGACAGCTCTGAAGG 59 118563173 118565900 TTCTGTCCATACACTCTGCA 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 1 3 7 117 15 34646202 34694159 TCAACACTGAAGGAGGAGAG 59 34646104 34646122 AAACCACCACAGTAATGGC 58 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 2 3 3 80 18 73272157 73272176 AGACATTCTTTCTGGAAGCA 57 73272219 73274059 CATCCCTGCAATCATCTCC 58 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071503 2 1 2 110 1 100710495 100716859 AAACTTGTCAGGATGGGCA 60 100716933 100716951 TTAGGATGGCCAATCCCAC 60 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000070873 2 1 2 80 3 5543252 5544955 CAGGGAAAGTGTACAGACGA 60 5544996 5545016 TCCGTTGGAAGTAGGTAAAGG 60 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640 1 1 2 80 3 5544083 5544953 TGAGATCCAGGTGTACAGAC 59 5544994 5545014 CGTTGGAAGTAGGTAAAGGTG 59 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 1 2 2 80 5 59082272 59082291 GGAAGAAGGATTCATGGCTG 59 59082334 59082537 TATACAGATGGAGGCTGCG 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 3 1 1 60 20 3791760 3791780 TTCATTTCCTGTACCTGTCCT 59 3791716 3791736 ATAGGTTTCCATGTTGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943 2 1 2 80 7 139668515 139673722 ACTATCACTCAGATAACCCTTCC 59 139668457 139668476 GTCCATTTGCACTTTGACCA 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789 1 1 2 95 3 8962202 8962220 AAATAACGCCAGGTTCCTG 58 8962278 8962926 AGGTAGACCCTGCTATAGGA 59 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 3 2 2 82 5 173384613 173384716 CAACACAAGGCTGTGTCTC 59 173384761 173384780 CTGTTAGAATGGTGGAGACG 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 3 2 3 80 20 3992059 3992449 AGGAATGCAGGCTATACTATCTG 60 3992487 3992507 GCATCATGTTGGAAAGTAGCT 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000037100 3 1 3 115 13 52282370 52282389 CCTCAGATAGCATCTCCAGC 60 52278946 52282292 ACTTCGAAGTTGGGCTACC 60 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 2 2 3 103 9 118843850 118920880 CCAGTACCTACAGGTTCCC 59 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000072263 1 1 4 80 5 127579905 127579923 TACTTCCAGTTCCCTGGAG 58 127579967 127605494 AAACATGTTCCTGGAGACC 57 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321 3 1 2 80 3 149200751 149200772 GGATGTTTGAGAATGTGGTAGC 60 149200812 149203926 TCATCACTGGGTTACACTCC 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 2 2 2 84 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934975 29934995 ACATCGTTATCACCATCACGA 60 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018272 3 1 3 80 1 231498157 231498175 ATGCTATCTGTGCACAGGT 59 231458503 231458526 ACCATGTCCATGATAAATGCTG 59 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709 1 1 2 80 5 58309500 58309520 GCACTGATAATTTGGCAAGTC 58 58309335 58309458 GAAGACATCCTTGGCACAG 59 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709 3 1 2 81 5 58308999 58309290 TTGGTCGCTATGTTTCCGA 59 58308546 58308567 AGCTTCCTCCTTAGATGTTCTC 59 NA Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 3 1 2 103 20 3821843 3821861 TTCTCTGCTCCAGATCCTG 59 3821631 3821649 GAGTATCGTGCGAATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380 1 1 2 80 1 189237926 189237947 GATCCTACTGAGAGTATGCACC 60 189237988 189243764 TTCTGTCACCTTCTGCCTG 60 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000077435,ENSRNOT00000089010 3 2 5 137 6 80235455 80237538 AAGCACAAAGTTTGGAGGC 59 80237637 80246045 TATCAGCCATCAACTCATCCT 59 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867 1 1 3 80 12 31537150 31538697 TGTTAGAGAACACCCTGGAC 59 31544455 31544473 TAAACTGCTCGCTTTGCAC 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 1 3 7 80 1 83716244 83716263 CAGAACCATAGTACCCTGGA 58 83716304 83763148 ATATTTCTCCTCTTGCATGCG 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028237,ENSRNOT00000092008 1 2 7 95 1 83711765 83711783 CTGTGTTCACCATCCACCT 60 83711842 83711909 TGAACTCCTCAGCTTGGTC 59 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 3 2 2 80 15 35415512 35415659 GCTGTTAAAGCTGAAGAGTAAGG 60 35415454 35415472 TTCACTTTGACGTTGCGTC 59 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000023555 3 1 2 80 1 198000976 198000995 TGAAGCAGTTCAGATGACAC 58 198001037 198001602 CCCACAATAATCTCCAGCTC 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 3 1 5 83 8 6140680 6150141 AATGTCAGACCGTCAGAGC 60 6140317 6140335 CACTGCATTCTGAGTCCCT 59 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446 2 1 2 80 20 32261123 32264851 AGCAGATGAGACTCTAACACG 60 32261063 32261084 AGAAGCTTTATGGTCTCCTCAG 60 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000083068 2 1 3 98 5 59502242 59502260 ACGAGCAGCTACAGAAGAC 60 59506528 59508708 CTTCTGCTGCCACATAACC 59 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000018083 2 1 2 80 4 153909376 153909394 GTAAGAAGAACCGGAGGGA 58 153909438 153910088 CCTGTGGGAGCATAATGAG 58 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083 1 1 2 84 2 104785122 104785140 TACTCCACTGCCATGTGAC 59 104785184 104788637 CCAGACTTAGTCTCTTGATTTGG 59 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059 1 1 2 80 4 57745770 57758319 TTCTTGAGAGGCCACAGAC 59 57758360 57758381 TCCAAACACATAGAGATTGGTG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 2 2 2 80 16 8318694 8318713 ATACGTACCCAGTACCAACC 59 8318755 8320052 CAGATTCTGGCAGAAGTCTG 58 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 1 2 2 80 19 10879165 10880943 CTTAATCACGATCGCAGCC 59 10879103 10879121 TTCTTATCCAGCTTCCGGC 60 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441 3 1 2 84 5 128723589 128730216 ACAGATTGCTAAAGACCAGAG 58 128718828 128718849 CTGGTATATTGCATCTACAGGA 57 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 3 2 2 80 16 37133283 37133303 GTTCTCACATAGGTTCTGTGC 59 37132171 37133244 CACAGTACATAGACAGCATCTG 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000049917 2 1 3 85 14 773161 773184 AGAATAGTGAAGAGACTGATGGAG 60 768109 773122 GTAAGAGTGTTCAATAGGTTCCTC 59 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 1 2 2 80 12 30795657 30795676 GAAGATGGGAGTTACCTGCA 60 30794517 30795614 CTTCAAGGGCTTCATCAGC 59 NA Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 3 2 2 80 17 9779308 9779326 CACTGTCCTCCAGTTTGTC 58 9779014 9779264 CCACTAGGCCTTCAATGTC 58 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000080379 1 1 2 82 3 123072609 123073065 CTTCATTGATCCATACAGGCG 59 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 2 2 2 80 16 24981004 24982623 GAAGGAAAGATTGAAGACGGA 58 24983634 24983653 TCCAGATGACTGTGAAACCA 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 2 3 3 80 5 173479582 173480058 TTCACTCTGTTTGATGAAACCC 59 173479523 173479542 CCTGATCAGAAAGATGCCCT 60 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 2 1 1 60 X 124516617 124516636 GCGTACATCCACAAGTTCAC 60 124515508 124515528 GGTAATGAACTCGAGCAACTC 59 NA DesignNoJunction Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828 3 1 2 109 2 104882268 104885893 AGGTACATCTGTGATGGAGAG 59 104885962 104890347 CAATCTGGTCAATCCAATTGC 58 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000090912 2 1 2 178 2 104882099 104882119 GAAACAAGTAAACTGTCCCAG 57 104883113 104885890 TCCATCACAGATGTACCCT 57 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000041961 1 1 2 80 18 17320704 17326199 AGATGATCACTGACTCTGGC 59 17326242 17326260 CCTCAGCATAGCTCAGACC 60 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 3 2 2 80 10 15197177 15197273 CTTTGGAATTGCAGGAGCT 58 15197314 15197335 TTCCGACCATAGATAACCTCTG 59 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789 3 1 2 80 10 15196969 15197076 ATCTCTAGGCAATGACACCC 59 15197118 15197137 GGACGGTAATGTTGGAAGAG 58 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000084236 2 1 2 105 12 37012439 37012596 CTCTGTGCTAAGAGGGACAG 60 37012664 37012682 GATAGAGCCTCGGTAGCTG 59 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000082970 3 1 2 84 X 128613777 128613795 GTTACGGCCTGAAGATAGC 58 128613843 128613951 TACCTGCGTGTTGTAATCC 58 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765 1 1 2 80 4 115731521 115731541 GGTATTCCTCTAGACCAGAGC 59 115731583 115752096 TCCCAGGAACCTGTTTCTC 59 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 1 2 2 80 11 37928521 37929111 CGAAGGTGATAACTCTGAGC 58 37928460 37928479 TCATGAGTCACCATGAACAG 58 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000079879 1 2 4 80 8 117889824 117890854 CCCAAGTGAACAAGAGATGG 59 117889562 117889582 AGAAGAACCACCTCTTCAGAC 60 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 3 2 2 80 10 86831185 86831203 TCTTGGTTTGCTCTTTGCT 58 86831244 86832036 TGTAGGCTTCATATAACTTCCC 58 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 3 2 2 93 3 118111422 118112964 ACTGGATAACACTATTCATGGC 58 118111350 118111368 TAGTGCAGTATATCGGGCA 58 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 1 2 2 91 3 118111421 118114764 CTGGATAACACTATTCATGGCC 59 118111351 118111369 AGTGCAGTATATCGGGCAC 60 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000086588 1 1 2 83 2 199840503 199841155 GACACTAATATTTCATGTGACCCAG 60 199841194 199841214 CTTAATGGACAGCGCATAGAG 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158 2 2 3 86 5 122037702 122100771 CCTGCAAGAAGAATCATATCAG 57 122100818 122100836 GTCTGGATGGTCTCTAGCT 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 1 2 2 101 7 12621671 12623748 TAGAGAAGTCTGGTGCCTC 58 12623813 12623831 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511 2 1 3 107 2 200713710 200713728 CACATATTCTGGCTGCCAG 59 200586065 200713642 AATCATCATAGCTTTGGTGAGG 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000086607 2 1 2 82 4 24619254 24619272 CTATACCCAGGCTCAGAGC 59 24619318 24623342 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000029865 3 1 5 82 13 55114475 55120565 ACATATCTTCCAGGTGCCA 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 1 1 1 60 3 122930753 122930771 CTACGCTCAGGACTTGGAC 60 122930796 122930814 GCTCAACAGACACAAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 3 1 1 76 3 122930730 122930748 CTCACCTCCATGACTCACC 60 122930788 122930807 AGACACAAGCAGTAAGATGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 1 2 2 149 14 1779185 1782624 CATTCCATGATGCCAAAGGT 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942 3 2 3 81 2 200793304 200794073 AATTACTGGCCCAGAAATGC 59 200794117 200794135 CCAGGAGGTCTTAGACAGC 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356 2 1 3 94 3 118137360 118152170 TATGACAGATTGCTGAAGCT 57 118152225 118152245 ATTATGTTCACTCTTCCTGGG 58 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531 2 1 2 81 1 48026714 48026847 GCGACCAGTATGGGATCTC 60 48026651 48026672 CTGCCAGTGTATTAGGAATCAC 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610 1 1 3 80 4 164445933 164445953 TGGCGTAAATGTATACAGACC 58 164439030 164445892 GGTCCTGAAGGAACTTATCC 57 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000019319 3 1 2 122 1 4786017 4786035 ACGACCTCTGATGTTGTCC 59 4756909 4785931 CTTGCCGTTAGAATTGGCA 59 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 2 2 2 80 5 131858200 131860421 CTGTGGGAATTTGGTCGTC 59 131858138 131858156 ACCAGGTCATGGATCTTCC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000082672 3 1 5 81 3 8569580 8571778 CAGATCGACAACCAGTATCAG 58 8571818 8571839 TGAACTTCTTGCAACTCTTCTC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079640,ENSRNOT00000091697 1 2 5 81 3 8582421 8582440 GATTGAAGCCTGGATCAGTG 59 8582483 8582828 CTTGGAAAGCTGGATGTTGG 60 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000057095 1 1 3 80 5 134492924 134492942 CTACTCAAGGCTTTCCAGC 58 134493025 134494145 CTGTAGTTCTTTGTCACCCA 58 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000078650 3 1 2 80 2 124205972 124277548 AGAATAGACAAGGCTCTGATGAG 60 124277588 124277606 CCTTCTTGTTGCTGCATCC 60 NA Rattus norvegicus 81 Tnfrsf9 ENSRNOG00000036942 ENSRNOT00000055506,ENSRNOT00000077202 1 2 2 80 5 168021539 168021557 GCCCTCCAAGTACCTACTC 59 168021599 168023358 TGAACCTGAAATAGCCTTGAC 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000077999 2 1 3 81 8 78009895 78019506 TCTTCTACCCAGCACAACAG 60 78009833 78009852 CTCCAGGACTCTTGTGTACG 60 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158 2 1 2 81 9 16072968 16074234 GCGATAAGGTATAAGAGGGCA 60 16076390 16076408 ACAGAGACACGATAGCCAG 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724 3 1 2 84 8 53313935 53319657 TCAGTGCTGTTATTCAGTCTC 58 53319703 53319721 TCAAGAATGTTCTGTGGCA 57 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027518 1 1 3 80 10 15454920 15457175 GACATCCTCATTAACTGTGCT 58 15454860 15454878 CACCACAGTCTTAAAGGCA 58 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907 3 1 3 81 13 56018150 56018168 GTGAAGTGTCATGCCTCTG 59 56077120 56096843 GCAGAACTTCCTGATCTCC 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 2 2 3 102 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654707 120654726 TGAGGATGAGACATTGGCAG 60 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000075851 2 1 2 60 10 70400011 70400030 TTCAGGAATCCTCCATTCAG 57 70400053 70400071 GGTTAGGGAGAAAGGAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005 1 1 2 80 16 48320931 48320951 GATGGCATGGATATGACAACG 60 48316301 48320892 TGAAGTTCGACTTGAAATCAGG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000088006 2 1 3 80 12 37627144 37628492 CCTTCAGAGATGATAACAGCAG 59 37628530 37628551 CAAGGAGGTCTTTCTTCATCTG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000088006 3 1 3 80 12 37627143 37628490 CCCTTCAGAGATGATAACAGC 58 37628530 37628550 AAGGAGGTCTTTCTTCATCTG 57 NA Rattus norvegicus 81 Rn60_17_0383.1 ENSRNOG00000059649 ENSRNOT00000085070 3 1 1 62 17 36915424 36915443 TTAGAGGACAGACAGTGTGG 59 36906719 36906737 TGCCCTTGATAGTCAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000083458 2 3 5 80 10 56196353 56197214 TTCACCCTTAAGATCCGTGG 60 56197256 56197275 ACGGGCATCCTTTAATTCCA 60 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000017195 1 1 2 80 13 56874852 56874871 CAAGTTCCTTCTGGAATCCC 58 56873877 56874813 GAAAGAAGCAGATCCTTAGACAC 59 NA Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 3 2 2 80 1 126189406 126189427 TTTCACAAGATAGTTTGGCAGC 60 126188964 126189371 CTGTCACAGTACCATTTATCTTCAG 60 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000075708 3 1 2 96 8 82274467 82274485 TCACCAACTCAGACATGCA 59 82276041 82276062 CTATGGGAAGTCTGCAACAG 58 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543 1 1 2 109 5 134706539 134708484 AATAGACCAGAGATGGGCAG 59 134708556 134708574 TCAAACTTCCCTGGCAGAG 60 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083 1 1 2 80 20 27039181 27039202 AAGGAACCTTAATCGAAGACTC 58 27041785 27043788 AGATCTCCTCTGGTTCTGC 59 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385 1 1 2 80 10 55535791 55535809 ATTCCGACTCTCGCTTCTC 59 55535384 55535747 TGCATGTCTGACAGTGAGG 60 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385 2 1 2 81 10 55535194 55535323 TGAGGACTGTGAGTGTTCC 59 55535131 55535149 CTTGGACTCCAGACTTTGC 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000060327 1 1 7 158 20 4091632 4091650 CATCTACAACCGGGAGGAG 59 4091820 4095062 ACCTTGGGTTCAACTGTCC 60 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080590 1 1 7 83 20 4091792 4095007 GAGATCTCTGATAGATTCCTTACAG 58 4095090 4095108 GAGGTTGTGGTGTTTCAGG 59 NA Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 3 2 2 80 9 16651345 16651364 GAGGAAGAGAAGAAGCACCT 59 16651407 16652535 CTCCTTCTCCTCCATGCTG 60 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294 1 1 2 82 7 117149826 117149844 TCATCCACGGAAACCTGAC 60 117149545 117149780 ATCGTCAGGAAGTGCAGAG 60 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886 3 1 2 80 19 12553389 12553407 CTTCTGGAATGTGCAGCTG 59 12536259 12553350 CAGTGGATAACCTTTAAATCGGAC 60 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000017573 3 1 3 85 18 25199538 25200167 AAATTGCCAAGCCTGTCTC 59 25200215 25200234 TTGAGCTACAAGATGAGCCT 59 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290 1 1 2 109 7 144309520 144309539 AGAAGTCAGTCTTGATGGCA 59 144309240 144309448 TCCACGGAAGATGAAGCTG 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000090697 1 1 18 81 1 43454876 43474987 GATCTGGTCCAATGCTATACG 59 43475027 43475048 CTGCCCATATGCAATTAAATGG 59 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 1 2 2 88 10 53575898 53575917 CTGAATGAGGAAGAAGGCAG 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000091650 1 1 3 190 7 12668224 12668247 GTATGCAGGAGTTCCCTCC 60 12667414 12667432 CAGGGTTCAAGTTGCTGAC 59 NA Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 2 2 2 80 14 3438530 3439784 GTGGTCCAAATTACAAAGGGT 59 3438470 3438491 TTCACTACTTGCTTTAGCTGAG 59 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 2 3 3 80 19 10430953 10430971 TGCAGAACACCAAAGTCAC 59 10430526 10430909 GAGTCACGTTCTTTGGCTG 59 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000026716 2 1 2 138 9 17689305 17693097 CTCATGCTAGCAGGTTTGC 59 17688192 17688210 TCATCTTCTGGATTGCGCT 60 NA InUTR Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 1 2 2 80 7 77159281 77159302 GTCTGATACCTCAGAGGAAGAC 60 77159129 77159241 GGTGGAGTCAAACAGAATGC 60 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941 2 1 2 80 9 82625828 82625846 TCAGCCCTATAACCCTCAG 58 82625890 82626719 CTTACCATCTCAGGAGCCA 59 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 2 2 2 60 1 90961674 90961692 CAGCACTGGAACCATTCAG 59 90961114 90961138 AAGTCAGGGACATAGTAGATTAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 3 2 2 61 1 90961664 90961682 ACCATTCAGGGTGGAACAG 60 90961103 90961122 CCTTGGAGATGAAGTCAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680 1 1 2 80 11 86512839 86517375 GAGGACAAACAGGACATCG 58 86517419 86517437 CTTCTTGACTGACTTGCGG 59 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000001301 1 1 3 80 12 36738463 36740099 GTTCGTTGGGATGAACCTC 59 36740144 36740162 TCCACCAGATGGATCTTGC 60 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000001301 2 1 3 80 12 36738462 36740098 TGTTCGTTGGGATGAACCT 59 36740143 36740161 CCACCAGATGGATCTTGCT 60 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 3 1 1 60 7 122456921 122456939 CGATGGCCAGGATAATCTC 58 122458228 122458246 GTAGGAGACACTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601 3 1 2 80 8 23366870 23367998 TTGAGCAGAAGACTGAAGCA 60 23366809 23366828 CGTTAATGACCTTGGAGCTG 59 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767 2 1 2 80 9 112412101 112426567 TACCACATACAGGGAATAGAAGG 59 112426606 112426625 AATCTCACGGTTATGCACAC 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 3 2 2 81 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117847 TACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000080304 1 1 3 80 6 136050639 136059685 ACACTATGCACATTTCACATGG 60 136059726 136059744 AGTTTCTACACCGAGCTCC 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 2 2 2 80 12 40520681 40520701 TTGCTAAAGTTGACCAAGGTG 59 40520743 40521527 TCTGTGCTTCCAGTACCTG 59 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 3 2 2 81 5 135661780 135661915 CAACCAGATAAGGGTGACAG 58 135661718 135661741 GTTCTATAACATACTCCTCCATGC 59 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088649 2 1 4 80 13 70229130 70229148 AGCATCAACAGAGACAAGC 58 70229189 70240743 GATGTTATACAACACCATGCTG 58 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088649 3 1 4 80 13 70229131 70229149 GCATCAACAGAGACAAGCA 59 70229191 70240744 CGATGTTATACAACACCATGC 58 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717 3 1 2 82 18 63882700 63882720 AAGAGAAACTGCTGGTGAC 58 64015851 64015869 GACAATGATGAGGACCTGC 58 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 2 1 2 82 7 54022217 54022235 CTTGAGGGTGAAGAGGAGG 59 54022279 54022528 GGAACACTAACCTGTGTACAC 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000038172 3 1 2 80 7 114159092 114166867 GAAGCCATATAATCCATCACAAGG 60 114154871 114154892 TTGAAGTTCAGGATAGCTTCCA 60 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 3 2 2 80 17 16370053 16370073 ACATTTGCCTTACAGGAAGGA 60 16370111 16372547 GTAACATGCTATTAGCACACCTG 60 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 2 3 3 80 12 37680955 37682693 TTGTAGTCAAGTGCCACCA 59 37680893 37680912 CATCCACTTTCTCCTGGAGG 60 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000006162 1 1 2 80 3 1893845 1893864 ATCCTGTTTGCCATCTTGAC 59 1883610 1893805 CGCATCATTTGTATTGTAGAGG 58 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 3 2 2 130 5 64673618 64673636 ACAGTCAGAATTCCACCCA 59 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 1 2 2 80 5 122683698 122683719 GCGTTATGATTTCTTTGCTCAG 59 122683758 122687650 TCCATGTAATCCGTTACACCA 59 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000086756 3 1 2 127 1 16822453 16827566 CATCTCACCATTGACAGCT 58 16827654 16827675 GGTCGATTTCACTTAATTGGTG 58 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000071544,ENSRNOT00000044015 2 2 2 80 8 4326272 4333303 ACGTATACAGATGCCAACCT 59 4333346 4333364 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 1 2 2 80 11 9990348 10020683 CGAGCGAATCACTATCCGA 60 10020725 10020745 CCAACACAAACATACTTGCCA 60 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985 2 1 2 80 12 37706800 37707370 AGTTTAATGACCTCTGGAAGAG 58 37710348 37710366 AATCACACTGAAGAGCTGC 58 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000085981,ENSRNOT00000016876 2 2 3 97 3 22890309 22892597 AGAAAGGGACCAGGTTTGG 60 22890230 22890248 CTCTTCTAGCACCTCGAGC 60 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482 1 1 3 93 11 88874549 88877134 GAGACAAGGTTGCATCTGC 59 88877191 88877209 ATTCCTCTCCAGTTGCCTG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000045553 1 1 6 80 7 132099959 132099979 CATATGCTGAAAGAGAAGGCG 60 132095053 132099919 GTCCTCTTCATCTTCTTGCAG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000066528 2 1 6 80 7 132083633 132084305 GTACACAGCAGATCCTCCA 59 132080026 132080044 ACACTGAAGGAAAGACGCT 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154 3 1 2 82 4 145453537 145453557 CCTGATCTCCTAAACTCTGCT 59 145452626 145453493 CATTCCTCGGCTTCATCTG 58 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 3 4 4 80 16 54373119 54373137 CAGAGTGTGAGAAGCTCCA 59 54373180 54374550 AGTTGTCAAACTGCTCTTGC 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 3 2 3 80 4 164300938 164300957 GCATGGATGTAAACAGACCT 58 164146104 164300898 TGTAGGAACTTCAGTTCATCCT 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 3 3 3 80 13 71134711 71134729 GACTGCAAAGCTAGTCACC 59 71134773 71136849 TCGATATTCACCTCCCGTG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366 2 1 3 80 13 71107994 71108013 TCCTTAACCAGAAGCATCTC 57 71108056 71112436 GCCTTTGTTCTGTTGTTGG 58 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000012222 1 1 2 84 4 7301402 7303978 TTCCCAGACAGTCTATGGC 59 7301054 7301072 TACTCAAAGACTCGGGCTC 59 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 1 1 2 80 2 148609911 148609929 CACCTATGAACAGTCTGGC 58 148609973 148620989 CGGTTGAAGGATTCCTGTC 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 3 1 2 80 2 148609964 148620982 GGTGATGAAGACAGGAATCCT 60 148621023 148621042 CCAGAGGCTCTTTGATTCCT 60 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000083587 2 1 2 95 1 116674238 116674257 TACAACAGGCACAGACAGAG 60 116674315 116679774 CAGTTGCCGTGTCTTTCTG 60 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 3 2 3 93 3 29868417 29868435 TGGCATGTATGCATGTGAC 59 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 2 3 3 80 10 54229073 54229093 GATCAAGTTGAGCAACAAGAC 58 54229135 54233078 CGCATGAGATCATCTCCTG 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864 2 2 4 81 1 128226694 128226712 ATGAACAGTCGGAAACCAG 58 128217306 128226649 TCCTTTGGGCATTAAGTGG 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000091163 3 1 3 82 10 74512014 74517378 TGTTACATAAGAAACCGCTCC 59 74517422 74517440 ATGATGCCATGTGTCAGAG 58 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000034283 1 1 2 85 16 8578275 8578293 AGACCTCTGCAGTTCAAGG 59 8578206 8578226 AAGATTGCTTGGCTTGTGG 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000016967 1 1 3 80 2 257472177 257472196 GCAGAATTGAGCAGGATCTG 59 257467331 257472134 AGTCATCTCCTTCCTGCTC 59 NA Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 2 1 1 91 16 27472197 27472215 ATATTGCTGCCTACAGAGC 57 27472108 27472126 TTTGTCCTCAGTCGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335 1 1 3 80 17 21639929 21738501 ATAGGATTCCTGGAGTCCC 58 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000022382 3 1 2 107 1 277068801 277068819 GTTGGTGTTCCGTGTTCTG 59 277080071 277093137 TTGGACTGGCATGGATCTG 60 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000042072 3 1 2 89 1 25787655 25839187 CACAGCTGAAGGAAATGCA 59 25787584 25787602 CTCTTCAGCACCTTTCCAG 58 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188 3 1 2 86 16 54028886 54028906 CAACCTTGATAGATGTCACCA 58 54028954 54040547 TGTTCTTGTAGTTCCAGCC 57 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000088469 3 1 2 81 14 78685199 78685223 CTTCTTCTCCAAGATCATCTCCT 60 78685139 78685157 GAGGTAATCCCTCGTGAGC 60 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 2 2 2 94 10 56768863 56769031 GAAAGGCTTTACGCACTGG 60 56769089 56769107 CATCTGAGGTGAAGTGTGC 59 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 1 2 2 81 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309176 42309194 CTTGTGGAGGAAGGGAAGG 60 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000082037 3 1 2 81 5 153685039 153685059 GAGACATTCTCCTTCTCGGAG 60 153684634 153684996 CTTTCCCATCTGCATCCGA 60 NA Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 1 2 2 80 7 133457354 133457375 CCTGCTAATCTCCTTAACATCC 58 133460969 133469105 TTATCCTCCTCAGAAACTCCA 58 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 2 3 3 80 8 111078413 111079535 TAAGCACTCAGTAGAAAGGTCTC 60 111078355 111078373 TTATCCAAGACTCCCTGCC 59 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 1 2 2 80 13 73689565 73689587 GATGATCTTGAGAGCTCTTACAG 59 73684777 73689525 TGCGGCTTCATCTCTAGAC 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 2 2 5 80 2 258868228 258932039 CGAATACCGAAGGTTTCAGC 59 258868167 258868191 CTATAGAATAACCTTCACAGGACAG 59 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905 3 1 2 87 8 6908638 6914945 GACAGAAATCAGCTGGCAC 59 6914994 6915014 GTCTTGGAGGATTACTGAAGC 59 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000074896 1 1 3 80 8 90629086 90629225 AAGCTGAAGAGATCCACGTC 60 90629025 90629043 TTACTGACAGTGTGCTGGG 60 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721 1 1 2 85 7 70556570 70556588 GTATGAGGAGCAAGCACAC 59 70538439 70556521 GACATATGGCTTTCCCAGG 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036672 1 1 4 105 8 124892715 124936114 GTCTCCACATACCAGGGTG 60 124892628 124892647 AAAGATGGTTCATCTGCTGC 59 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 2 2 2 80 16 84850586 84850604 GTTCCTAGCTTAGCACAGG 58 84842312 84850542 CAGAGGACTGAGCTTACTG 57 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742 2 1 2 81 16 84603310 84614346 GTCACCAACGGTTTAGCTG 59 84603247 84603270 GATGTCTCTGAAATGATGAAGTCC 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000046622 1 1 4 80 4 167352675 167353575 AACACCCAGACTCAGATTCAG 60 167353616 167353635 CTGCTGGAGTTGATTCATGC 60 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 2 2 2 82 2 24670392 24670412 TACACTGAACTGCTGGTACTG 60 24670456 24689820 GCAGATGCAAACCTGTAGC 60 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054 3 1 2 87 X 16144098 16144116 GACTTGATGGACATCCCAG 58 16144165 16172937 ACTTGTTCCCTTCTATTTCCC 58 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 3 1 2 88 20 4120112 4124687 ATCTGAGAGCAGGATCAGTG 59 4124738 4124756 GTGACATTCACTCCTGCTG 59 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349 1 1 2 80 4 157130520 157130539 GTGGATCTGCTGTTCTTCAC 59 157130580 157130790 GCACTTGATGATTTCAGTGGT 59 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 3 1 1 70 5 38922754 38922773 GGTCTGTGGTTGAAATCCAC 59 38922680 38922698 ATCCTTCTGGGCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 2 1 1 60 9 92927282 92927303 AGACATCATCCATGACTTTCAG 58 92928129 92928147 CTTGTCCAGGGAGATGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000084053,ENSRNOT00000078412 1 2 4 80 20 12855160 12855179 GGGTTTGCTACCTATGAGAC 58 12854534 12855118 CATGATGTCTCCAAAGACCT 57 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000010482 1 1 4 83 14 80071062 80071080 GTCAGTCTCTGTCCCTCAG 59 80054845 80071019 TCTTATACTGTGAGTAGAGGCTG 59 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 3 2 2 80 4 34671777 34674303 GCTAGCAACATATCAGACCA 58 34671716 34671734 TTGAAGCTCTCATGGATGG 57 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218 1 1 2 80 10 91269640 91272773 GACAACTTCAAGGAGGTGTG 59 91272814 91272834 AATGTTGCTGTCTTCATTCCG 60 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000084398 3 1 2 83 9 104864046 104868807 ACAGTAACAGATGAGTTGTGC 59 104863983 104864001 ACATGTTGATTTGTGCGGT 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685 1 1 4 80 12 38447622 38450299 AGAGTCAGCAGATTGATTTCC 58 38450340 38450359 TCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 2 3 3 88 X 15759451 15760172 GAGTTTCTCAAGCACTGCC 59 15759381 15759399 AGAGACTGCACCACTTCTC 59 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858 1 1 2 122 2 113605823 113605841 TATCACCTGACCCTTCAGG 58 113584458 113605738 CCTTGGACCATTTACGTGTC 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000040482 1 1 3 102 3 48295247 48295265 TCAGATCTCCAAAGCCCTG 59 48293665 48293687 TAGATGTGGGTGGCTTGTG 60 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 1 3 3 80 4 165985878 165986734 CTTCTCAACTCTTAGATGTAGAGC 59 165985821 165985840 TTTCATCAGAAGCAGGAGGT 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 2 1 2 107 16 85280549 85280647 ACAGCCAGGTTCTGTACAC 60 85280460 85280478 ATCGGAACAGAGTCACCAG 59 NA Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 2 2 2 80 7 58340391 58342732 ACCTATTATGGTAGCTTGCG 58 58340330 58340351 ATTACAGGAGATCACAACAGAG 58 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 1 2 2 80 2 207368564 207375751 AGAGTTAAACAATGACTGTGCC 59 207375789 207375810 AACCTTTCAGCATCTACAATGG 59 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370 2 1 2 80 7 118165659 118172120 CCTATCCAGGAATAGTGTTACAG 58 118159165 118159183 GTGCATATCTGTAGGCTGC 59 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 1 2 2 80 13 74796685 74796703 CAGCTCCAGTCCAAATGTC 59 74795830 74796641 TGCAAATCACTGTCAGTGG 58 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000089062 2 1 2 80 13 74933868 74933888 ATCATGGGAGAGGAAATACTG 57 74923389 74933826 CCATCCACAGGTATCTCCT 58 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 3 2 2 80 6 7920207 7920226 GACCCTGAGAAGAGAAAGGT 59 7920269 7924074 GCTGGTAAACATCAGCGAG 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 1 2 2 89 1 87930023 87930041 TTATCTGCCATGTCGTGGG 60 87928649 87929970 TCAGCTGGTTGTCAGTCAG 60 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000045373 2 1 2 80 5 5312639 5316370 CTACCTCCAGGAGAAAGGT 58 5316414 5316432 CGTTCATCACGTTCATCAC 57 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 2 2 2 83 1 65663874 65663892 CGGACATCAAGCTCTTTGG 59 65661740 65663830 CCTTCACAGCAATGTAATCCTG 60 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000085332 2 1 2 86 9 92878367 92880330 CTCATTGACTTTGAGGGCA 58 92880378 92880398 AACAGTAGGAGTTCTTGTACC 57 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437 3 1 2 80 8 94500711 94500730 CTCCCAGCAGTCTTATGGAG 60 94494283 94500670 GAGCACCAGATTTGTTTCCAG 60 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000004387 3 1 2 91 13 83871484 83871502 CAATGTTGACAGCTCAGCG 60 83865733 83871430 TGGATGGTGATTTCTCCCTG 60 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 3 2 2 80 3 46683305 46683497 GTCGGAGATACAGCATCCT 59 46683243 46683264 AGGCTTGATGATAAGTTTCCTG 59 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 3 2 2 82 1 143718889 143723671 CCATGAAACTGCATTTCTAGG 57 143718827 143718846 TCCGTTTGTTTGACTTTCCA 58 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 2 2 2 80 8 116829975 116833487 GGTCCATCCTCAGAGACAG 59 116829913 116829932 GAGATAGCGTATAGAGCGGA 58 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 1 1 1 63 9 37057153 37057171 GTGCTTCTCGTTTCAGTGC 60 37057200 37057218 TTGGGATAGTGCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000078977 1 1 2 87 8 94352240 94368766 TCTCAACAAGGACTTGGCT 59 94352171 94352189 CTCCTGGTTGACAATGCAG 59 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336 1 1 2 80 7 18428667 18429678 GCAACACCAATGACTGTCC 60 18429722 18429740 CACGGAAAGGAACACTGTC 59 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 3 2 2 110 20 5115205 5115778 AGAACCAGAACCGATCACC 59 5115852 5115870 TAGACAGTGACAGCAGGTG 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000049303 2 1 5 88 4 176261778 176261796 AGAACCTGTTTACACTGGG 57 176257071 176261726 ATCCTGGAATGTCTGAAGC 57 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 3 2 3 80 1 86999205 86999877 TATGGTGGAGTTTGATTCTGTG 59 86999915 86999936 CAACAGCCAGAATAGATGTCAG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550 2 1 2 81 8 116373052 116373070 TCACGGCCATCATCTTCTG 60 116372903 116373008 TCATGCATGCGATTCATCTC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 3 3 3 80 3 22884845 22887245 TACTCTGAGAAGCTTCGGG 59 22887287 22887307 GTGCACATACTCAATGTCAGG 59 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149 3 1 2 83 1 134832408 134833698 AAAGAAAGGAGCCACTGGA 59 134832343 134832361 CTCTCCGTGTCAAAGTCAC 58 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000047843 2 1 2 80 11 32001663 32002480 AGGAGATATAGTCATGGTTAAAGGG 60 32008823 32008841 TTCAGTTCTCCTCCAAGCC 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 3 2 2 82 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473129 38473147 GGTTGATGACATCTCCACC 58 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000007103 3 1 2 121 3 117382699 117382717 ATGACATGAAATGGCAGGC 59 117379906 117380025 TTTGAATTCAACCACGCCA 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000016454 2 1 2 81 1 229075807 229078807 GATTCAAAGTTCCCAGTCCC 59 229078849 229078869 TTCTGAGTGTTTGACTTGGAG 58 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 3 3 3 80 7 68452993 68453012 GTACTGGAATGATCTTGGCT 57 68450351 68452952 ATCCTAAACCTCCAATGAAGC 58 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 3 3 3 80 12 39866828 39867598 CTGTCATGGAGGTTTATCACC 59 39866768 39866788 TGATCTGGTACATCAGTTGGT 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 1 4 10 80 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118026 87118044 CCTCAGGAGTAGATGTGCC 59 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000084499 3 1 3 146 6 3767007 3767025 TTACTCAAAGGCTCTGTCG 57 3745120 3748785 GGCTGTTATAGGATTTCTTTCC 57 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104 1 1 2 80 8 59239858 59239876 TATGCCTGACAGCAGAGAC 59 59222513 59239816 ATTAAGGAGCTGGTTTGTGAG 58 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000016828 1 1 2 80 9 38734431 38744493 AGATGACGCACAATGTGGA 60 38744537 38744555 TTAGGATTCGCTGGCTCTC 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673 1 1 2 80 9 42881159 42881179 TCTACAAGTTCATGAAGGAGC 58 42881220 42881519 TCTTCCACAGGTTAATCTGC 58 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 3 2 2 81 2 206076488 206076506 AATCTCTTCGAGGCCTCTG 59 206076548 206109305 AGTCCACACTTTCACTAGTAGC 60 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000086340 1 1 2 80 9 113306783 113306801 AGCAGTACAGTTGCAACAC 59 113303111 113306739 CATGTCGTTCTGCTTCACC 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000082892 1 2 3 80 8 128202854 128202873 GAGTCAGACACTGAAGACCA 59 128201511 128202811 TTGGGATTCCTGTTTGCTG 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544 3 1 2 82 1 89346004 89346954 AGTATGAGAGTGAGAAGCGC 60 89345941 89345961 ATAACTGAGGTCCAGTTCTGG 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657 2 1 2 145 2 210868867 210873849 TCTGAAGCTCGAAGTGGTC 60 210868501 210868758 CTGAACAACTCCTCAGCGA 60 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 3 2 2 80 2 210868046 210868064 CTGGAGCCAGATATTCTGC 58 210867892 210868004 CTCCTTGTACAGCTGTAAGTC 58 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 1 2 2 80 10 89470620 89471501 TAACACCCTCATGCTTCCT 58 89471545 89471563 GGCAAATTCTCATCCACGA 58 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 2 2 2 80 14 82786218 82786593 CTTCACAGTCAAGCAGATGAG 59 82786635 82786653 GCTAGTGCCTTCTCATCCA 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 3 1 3 80 11 36749245 36749264 CAGAGATGAAGGACTTGCAG 58 36749305 36762869 GATAAGTAGATTCCGGTGGAG 58 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 3 2 3 83 11 36749239 36749257 GTGTGGCAGAGATGAAGGA 59 36749304 36756783 CAATACTGTCCGGTGGAGG 60 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545 3 1 2 86 1 67845677 67845697 ATGCTTATAGGGCTGAATTGG 58 67832563 67845631 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627 1 1 2 80 3 120675778 120723879 GGCTTTGCTAATGAAGTTGCT 60 120723917 120723939 GGAATATTGAAGGCAGAGATCAC 59 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 3 2 2 123 7 59302553 59304080 GTCTTGAAGCGAGGAAGTC 58 59304167 59304185 TGTCTTCCTCTACGTCCAG 58 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 2 2 3 80 1 169455732 169455750 CTTTGTGAGCGATCTCAGG 58 169454328 169455690 CAGCTTCTCCTTATACTCCTG 57 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 2 2 3 80 9 100561218 100561238 CAAATTTGGACAGGGCTAAGG 60 100560253 100561177 TCCTTAAAGCCCGATCTTCC 60 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000028277 2 1 2 89 10 89978043 89978061 AGGATTCCGGGAAGTACTG 59 89978114 89987406 CAGGAGAAGCTGGAAAGAC 58 NA Rattus norvegicus 81 March10 ENSRNOG00000007084 ENSRNOT00000009316,ENSRNOT00000090662 3 2 2 87 10 93638451 93663150 GTCGTGCAAACAGAGTTCC 60 93638382 93638400 TTTGGGCTCACACTTAGCT 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216 3 1 2 80 16 9630312 9631483 AACTTAAAGCCAGTCAGGC 58 9630250 9630268 CTTCGTCTACGGAGATCCT 58 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000022074 2 1 2 124 8 49713238 49715433 TGTCAGCTAACCATGGTGG 60 49715807 49715825 GAGAATGAGGAGTCCCACG 60 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 3 2 2 81 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548466 CAAACTTCTGGTACAGCAGC 60 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000066726,ENSRNOT00000080168 3 2 2 80 2 149006669 149010016 CATTTACAGCGTTTCCAAGG 58 149006608 149006628 CTCAAATGTTCTGGAGAGGAC 59 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000022138 2 1 2 80 2 27945109 27945128 GTCTGCTTTGTTGGTGATGG 60 27943478 27945068 TTTGAAACGTAGACCCATTGG 59 NA Rattus norvegicus 81 Med28 ENSRNOG00000003592 ENSRNOT00000004912 1 1 1 80 14 70095058 70095076 GCTTTGCTTCCCTTGTGAG 60 70094088 70095016 GGATACACTGATCAACACCAG 59 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 2 2 2 80 13 91171739 91195959 TCTGGAAGTGATTTCTGACTG 58 91171679 91171699 CACCTTAATGTGATGGTTTCC 57 NA Rattus norvegicus 81 Ldlr ENSRNOG00000009946 ENSRNOT00000013496 3 1 1 80 8 22765041 22766926 GTGCATGGCTTCATGTACTG 60 22766964 22766987 GTAGATGTCTACACCATTCAAACC 60 NA Rattus norvegicus 81 F5 ENSRNOG00000057855 ENSRNOT00000079872 1 1 1 80 13 82524237 82526343 AATATCTGAGCTGCCTTGGA 59 82526385 82526404 TAGGAATCTTGTCTGGGCTC 59 NA Rattus norvegicus 81 Scn1b ENSRNOG00000021102 ENSRNOT00000092133,ENSRNOT00000028653,ENSRNOT00000079091 2 3 3 84 1 89557099 89557123 CTCCTCTTCTTTGATAATTACGAGC 60 89552034 89557058 TATCTCTGTTGGCCTTGTCC 60 NA Rattus norvegicus 81 Mcoln2 ENSRNOG00000015089 ENSRNOT00000020452 3 1 1 80 2 252042547 252042565 ACAGCTGCAGCATATACAC 58 252042606 252045239 TGTTCTTTAGATGGCGATACTG 58 NA Rattus norvegicus 81 Polr3f ENSRNOG00000007548 ENSRNOT00000010468 1 1 1 82 3 138695410 138696613 TCAGTAAGGTAGAGTTGTCCA 58 138696654 138696675 GATAGTCATATCCACTTTGCCA 58 NA Rattus norvegicus 81 P2ry1 ENSRNOG00000014232 ENSRNOT00000019305 1 1 1 80 2 151316566 151318907 CTCAGTTTGTAACATGGTCAC 57 151318948 151318967 TTGGCCAATAGAATGTTGCT 58 NA InUTR Rattus norvegicus 81 P2ry1 ENSRNOG00000014232 ENSRNOT00000019305 3 1 1 93 2 151316574 151318916 GTAACATGGTCACAAGAAGTCC 59 151318970 151318988 CATGTGGCACAAACTGGTC 60 NA InUTR Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 3 2 2 81 8 36235133 36240063 CCTTGACTGTCAATGGACC 58 36240107 36240126 CATTTGATCTGGCCCTTCTC 59 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095 2 1 2 89 19 21554212 21554230 AAATTCCAGAGGACCCGTG 60 21554283 21554580 GTGAATGAGAACTGTCGGC 59 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 1 1 1 60 3 143122561 143122580 AATTGTCCATTGCAGGAAGG 59 143123355 143123374 TCTCCACAATGTAAGTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000078514 1 1 3 83 1 217617539 217620373 CCAGAAAGACTATGCCAAAGG 59 217613782 217613800 TCTTCAAAGGTGGATGCGT 60 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000024041 3 1 2 80 1 37747620 37747640 TGATAAACGACTTCAGGAGCT 59 37747682 37749917 ACGAGCTCTAAACCTACGC 60 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000057673,ENSRNOT00000050005 2 2 3 60 14 83602671 83602689 GGAGTTACTTGTCTGTCCC 57 83591907 83602647 CACTCGGAACACCTAAAGG 58 NA DesignRelaxed Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260 1 1 2 88 9 42918043 42919374 CTCCTGTCTCTTTGTTCCCA 59 42917974 42917992 AAGGATGGTGCCTCTTCAG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000009920 2 1 2 86 3 48801447 48810139 GGTCGAAATGTCAAAGGACC 59 48801380 48801399 GGTGCTGTATTTGTTGAGGT 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246 1 1 2 81 3 48809686 48810131 TGTCAAAGTTTCACGTTCCT 58 48801401 48801420 TGAATCTGATGTGGATCCCA 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000042331 3 1 3 147 12 43462061 43462079 GAGTGCATCCTTAACAGGG 58 43457311 43459914 AAAGTTTATGGCACCTGGAG 58 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000079993 1 1 2 124 2 210444065 210444083 TTTGTCCTTTCCATCACGG 58 210441380 210443468 CTGGCAACATACTCATCCA 57 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146 3 1 2 100 7 83386863 83386881 ACTGAGCTCAAATGGAAGG 57 83389768 83396202 CTGGGAAACTCAAATCATCAG 57 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000005958 1 1 2 80 7 83469272 83469292 CTTTAACTGTACAAGAAGCGG 57 83469334 83473584 CTTGACTGTGTCTGTGTCC 58 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064 2 1 2 116 1 101166255 101166273 GTTTCTGCATCAGCTTTGG 58 101166353 101167224 AGTTGAACTGGGCTTTCTG 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000075057 3 1 2 128 2 31751774 31753439 AGAAATGGATCCACCAGCA 59 31750827 31751686 ACTTCTTCCCTTGAGATATCTCC 59 NA Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 3 2 2 80 1 126980281 126980299 CATCCAGAAGCTCTCCCTG 60 126980343 126983024 ACATCAGGCTCCAGAACAG 59 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 2 2 2 88 10 89168394 89168545 ATTAGCAGGTATTACAGCAACC 59 89168593 89168612 CTTTCTGCCAAGGGATTTGG 60 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000092151 1 1 2 109 1 255069901 255069919 ATATGACAAGATGGCGGCT 59 255075448 255085651 AATACCATCGGGTAGGACTG 59 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964 1 1 2 118 7 70784469 70790930 TTTCACAGGCAGAAGACCT 59 70791012 70791030 ATGCTGGGAGATAAGTGGG 59 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000022861 3 1 2 90 3 157040374 157049626 GAAAGAGAAGCAGTTGTCCA 58 157040303 157040323 TGGTGATGGTGATTTGTAGTC 58 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000015365 2 1 3 80 8 87355572 87355592 GTCTGTGGAGTTATCCAAGGA 59 87315941 87355531 ATGACATCTTCTCGAGCCTG 60 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 1 2 2 154 9 44560722 44560740 TAAATCCAGCCTGGGACAG 59 44478576 44560605 CTTTGGTGCCTTTCAGAACC 60 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 2 2 2 158 9 44560722 44560740 TAAATCCAGCCTGGGACAG 59 44478572 44560601 GACTCTTTGGTGCCTTTCAG 59 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 3 2 2 80 8 132030092 132030743 CAAAGCAGATGAAGAACCACC 60 132030032 132030052 CACTTCTCATCTGAGGAACGT 60 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000090186 3 1 3 91 5 61587768 61587786 AGCTAAGGCTGATGTGGAC 60 61587841 61589830 ACTTTGGACTGAACCTGCT 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 2 3 3 80 5 61604368 61604387 AATTCCTACCGAGGCTTCAC 60 61604427 61606803 TTGCCTACATACCTGATAACCA 59 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 3 2 2 109 10 37595145 37599646 GATGCCTACGATAAAGTTGCAG 60 37599715 37605555 CCATTCCCAAATCTTCCAGC 59 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000077616 1 1 2 92 7 97967522 97994357 GAGATGTCAGCAGTGAGGA 59 97967448 97967466 TGAAGACAGCGTAGCACTC 60 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000046377 1 1 2 80 1 99949744 99949764 CATCAGTAGATCCTTATGCGG 58 99948833 99949705 ACATGGTAATTATAGCAGTGGG 58 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000039281 1 1 3 80 12 47193997 47203596 CTCTCGAGAAAGGATAGATCGT 59 47204371 47204391 TTTGTCCTTGTCAAATTCCCG 60 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551 2 1 3 81 12 47185983 47203595 CCTTCGGTCAGGATAGATCG 60 47204372 47204393 TCTTTGTCCTTGTCAAATTCCC 59 NA Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000030891 3 1 2 165 12 48284179 48286155 CGGCTGTCAGATACAAAGTC 59 48283103 48283121 TTCATGAAGCAGGTGTTCC 58 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 3 1 1 60 8 36876882 36876904 CTGACCTTACTCTGCTATTTGAG 59 36876547 36876566 GTTTGTTAGCATCACCTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 3 2 2 80 16 56317717 56326671 AGGACGGATGTTCATATTCGA 59 56326713 56326731 AACCAGCGACACTAAGAGG 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 2 2 2 80 20 5007093 5007111 CTGAGCATCACTAGAGCTG 57 5007154 5007291 TACTTCCAAGAAACAGTCGG 58 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000001160 2 1 2 80 20 5004616 5004635 GAGGATGTGTTAGACACCTG 58 5004676 5004776 GAGATCTTCTGACTGATTGGG 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000079516 2 1 6 80 5 158109537 158109557 ACATCAACGACAAGTCTACTG 58 158109598 158114207 GGTTGTCATTGGTTCCTGAG 59 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 2 1 1 73 1 72421098 72421116 TTGCTCAGGAGTATGCACC 60 72422290 72422308 CATCATCAGCTCTGGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186 2 1 2 81 1 73396101 73396332 GAAGGCTACTCAAAGAGATGC 59 73396040 73396061 CTTCTGGTGGAGTCTATCTCTG 60 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 1 2 2 80 2 210702789 210702807 TCCCGACTATGACAGAAGC 59 210702440 210702749 TCGATTAAGTAGGGCAGATTAGG 60 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756 2 1 2 81 16 72129658 72129679 ACAGCCATTATGGTTGTTAAGC 60 72129715 72133221 CTGATATGGATCCTTCACTAAACTC 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000051290 3 2 3 84 8 127243007 127243031 ATAACTACTGTCCTAAGATTCCCTG 60 127243073 127248302 TTCGGAGCCATGACATCAG 60 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000038084 2 1 2 80 8 21454251 21454271 GGATCCAATTCAGAGAACCCT 60 21453174 21454211 AATAGCTGACCTCCTACTGTG 59 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000079414 1 1 2 81 3 164042656 164043222 CAGTTTCTTGGCAGGTACG 59 164042593 164042614 CAGAGTAGCTCAGATTGTTGAG 59 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 1 2 2 80 16 73960387 73961932 TTTCTGTCTTTGAGGTTGATGG 59 73960328 73960347 GGTCAAGAAACAACTTTGCC 58 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262 3 1 2 80 3 161989749 161989767 ATCAACATGGATGGCATCG 58 161988240 161989705 CAGCATCTCACTGTAGTGG 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 3 3 3 80 20 48564867 48564887 TTGTCTTTGTGGATGAGAACC 59 48564929 48570168 CAGGGATATCCCATTCCCA 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 3 3 3 80 20 48563763 48565397 TTGTACAGTGGGACATTCG 58 48565439 48565459 CAAAGACAATCGTGTTGACAG 58 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488 2 1 2 83 8 132453949 132471744 GCATGCAGGTTATCAACCC 59 132471791 132471809 CTGGGTGCAAATTCCTCTC 59 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 1 2 2 81 16 74548731 74550599 GATGAACTGGGTCCTATCCC 59 74550643 74550661 AATCCACCGGATACACAGC 60 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 2 2 3 80 3 80718515 80718533 ACCTCCTCTTCTTCCTCAG 58 80718577 80732040 ACCATTGTCCTCAAAGTCC 57 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000078862 3 1 2 93 5 101104596 101105826 TCATTTACTCAGCATGCTGTG 59 101104523 101104541 CTGTGAACTGCACATGTCG 60 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615 1 1 2 80 5 101023609 101023627 GACCGTATTCTCCAGGAGG 59 101020635 101023566 TGGTTCTTCAAGCCTATCCA 59 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113 1 1 2 80 3 171774091 171780658 CAAGAACGACTGCTATCGTG 59 171780698 171780719 CTTCAAAGTTGAGAACGTCTCC 60 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000020181 3 1 2 123 16 71019125 71021776 CTAGTGGGAACCTAAATGGG 57 71021861 71023212 AATAAAGGGTCACTTCTGGC 58 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000087254 2 1 2 81 5 77154286 77156268 GGAGTACCAAACTTGCCTC 58 77156313 77156331 AAACCAAAGCTACTTGGCC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740 3 1 4 80 16 81632237 81641335 TCAGCTACCATTGTTCCGAG 60 81641377 81641396 TGATCCTCTTCTTCAGCGTC 60 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 3 2 2 82 3 175983484 176040690 CGTCATCCAGGTTAACACCT 60 176040735 176040753 GTTTGTTGGCAATCACGGT 60 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026 1 1 2 80 3 176756485 176756503 GATTCATCCGGACACATCC 58 176754179 176756444 GTGATCACATTTAGTACTGTGC 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 1 3 3 88 16 69882205 69882225 GAGACTGGTATTACCGTTGGT 60 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194 3 1 2 81 3 151326682 151326701 CAGTCTCCACTATGCAACAG 58 151326745 151328272 TTTCCTTTCAGCCACTCGA 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000063906 1 1 2 163 3 159333761 159335181 GTTAGCCTCTTCCAGGACG 60 159335307 159335654 TCCTTGTAACCTTTGGGAGG 59 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677 3 1 2 98 3 159344522 159347507 AAAGAGGAGATGATTGACGG 57 159347567 159347586 ATAGATCTTCAAAGCTGGGC 58 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 1 2 2 81 3 176445751 176445769 GTGGATTTGACCCATTCCC 59 176444802 176445707 TATGCAGGCAAATATGCCTG 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000057845 2 1 2 90 16 79889114 79895106 AGGTCAGATGTAGAGACAGC 59 79889043 79889061 TTTCGTCTTCCACTTGCAC 59 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 3 1 1 85 16 82439362 82439383 AGCTATTAATAACTGCCCTCCC 60 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000068416 1 1 2 91 16 82217489 82220075 CCTAATGGATCTGCTAAAGTCTC 59 82220126 82224265 AACACAGTGGCAATTGGTC 59 NA Rattus norvegicus 81 U1 ENSRNOG00000056690 ENSRNOT00000077097 1 1 1 60 2 26443531 26443550 ATACCAGATGTGCTGACACC 60 26443490 26443510 GCCACAAATTACACAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056354 ENSRNOT00000080766 1 1 1 60 2 49203711 49203729 GGCTGAAACATCTTCTGCC 59 49203753 49203771 AGCCAGATCACCAGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058175 ENSRNOT00000086840 3 1 1 73 2 102009650 102009668 ATGCCAGAGTAACGGAGAG 59 102009595 102009614 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058747 ENSRNOT00000088625 3 1 1 61 2 11402477 11402498 ACAGAGATTAGTATGGCGACTG 60 11402519 11402538 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.1 ENSRNOG00000039689 ENSRNOT00000050796 1 1 1 61 11 43503667 43503688 ACTCTATCTGAATGTATGGCAC 58 43503711 43503729 AAACATTCCGTGGTTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038957.1 ENSRNOG00000054638 ENSRNOT00000077667 2 1 1 60 X 64914084 64914102 CAATCTGGTCGGTGATGTG 59 64914124 64914144 ATCTCCAACCTGAAGAAAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD38 ENSRNOG00000057993 ENSRNOT00000086480 1 1 1 60 5 136021266 136021286 AGTGATGAGAACTTTGTCCAG 58 136021226 136021246 TCAGATACACTTCATCCTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD38 ENSRNOG00000057993 ENSRNOT00000086480 3 1 1 60 5 136021261 136021283 GATGAGAACTTTGTCCAGTTCTG 60 136021223 136021244 TCCTCAGATACACTTCATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008300.1 ENSRNOG00000039481 ENSRNOT00000060511 1 1 1 67 2 52658355 52658373 CTGAACACCGAGACTTGTG 59 52658302 52658320 TCTTCTCCAGTTTCGGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058729 ENSRNOT00000077493 2 1 1 60 2 237871865 237871884 CACTGTGCATCAGTAGATGG 59 237871824 237871845 GGTCAGAACACTGAATGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106292.1 ENSRNOG00000052599 ENSRNOT00000071951 2 1 1 60 11 65644860 65644878 GCCTTGAACTCAGAGATCC 58 65644818 65644837 CCACATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055419 ENSRNOT00000091343 2 1 1 60 11 75965159 75965179 CTTAAGCTGACTGGTCAAGGA 60 75965198 75965219 GAGATAGTTTGGAGGTTCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060465 ENSRNOT00000079120 2 1 1 60 5 152997475 152997495 TAAAGTTGGGACAACACAGAG 58 152997515 152997535 TAACTCGTGAGTCTTGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053219 ENSRNOT00000078375 2 1 1 60 5 144839365 144839384 ATCAGTAGGTGGCAGAAAGG 60 144839324 144839342 GGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060433 ENSRNOT00000082094 1 1 1 60 11 72398328 72398346 ACTTTCCCTTCCCTCAGAC 59 72398286 72398305 CTCAGACACTGTGTCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056877 ENSRNOT00000084423 3 1 1 60 8 9365445 9365463 ACCAGTCTTCGAGCTAGTG 59 9365484 9365505 CTTCTTTGGAGGTTCAAACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000061688 ENSRNOT00000088935 2 1 1 60 8 13868558 13868577 TTTGAGGTCTATCCCGATGG 59 13868599 13868618 ATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058395 ENSRNOT00000081859 1 1 1 60 16 71209052 71209070 AGGTCTCTTTCCTGATGGG 58 71209010 71209028 CTCTACCAGGACACCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052659 ENSRNOT00000077407 1 1 1 60 16 60112173 60112192 TACATCCTCAGTCTGAGCAC 59 60112132 60112150 GCAACATCAACCTCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055632 ENSRNOT00000085129 2 1 1 60 11 86179621 86179640 ATTCCTAGAGGCATTGAGGT 58 86179663 86179681 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 3 1 1 60 2 157854823 157854842 AGACGCTATCAGAAGTCCAC 59 157854865 157854901 AGTCCAGATGCTGAAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 pRNA ENSRNOG00000051863 ENSRNOT00000087420 1 1 1 60 8 107808380 107808399 GAGACATCACCGAACATGAC 59 107808339 107808359 ACACAGGGATAAACATGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000058606 ENSRNOT00000080499 1 1 1 60 8 13870206 13870227 TAAGATACAGGTCATGCTTCCA 59 13870248 13870266 CAGGTCTCATTGTCACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055343 ENSRNOT00000088092 2 1 1 60 2 10368287 10368309 GGAACGATACAGAGAAGATTAGC 59 10368249 10368267 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052872 ENSRNOT00000091971 3 1 1 60 11 5021853 5021871 CATGTACATCAGTAGGCGG 58 5021811 5021831 ATTAGAGCACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051575 ENSRNOT00000088411 2 1 1 60 16 59413909 59413930 AGAAACTATGGTCAAGAAGGTG 58 59413950 59413969 TATCTGGAGCACAATGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058798 ENSRNOT00000085777 1 1 1 60 16 21559015 21559034 TGCTCAGTAAATGACTTCCC 58 21558974 21558995 CTACATCTGTTTAGTCAGGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026517.1 ENSRNOG00000049013 ENSRNOT00000072236 3 1 1 81 16 80549466 80549484 GAAATGCCTCCATGAGACC 58 80549403 80549421 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051532 ENSRNOT00000085683 2 1 1 76 16 20294815 20294834 GTTTAAACAGTGGTGCACAC 58 20294873 20294891 CCTGATTCACTCTGGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055748 ENSRNOT00000086759 2 1 1 60 16 19382269 19382289 ACACTACAATGGGAGAATTGG 58 19382229 19382250 CAATTAGCAATAGTCACACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059888 ENSRNOT00000079145 1 1 1 60 8 91715693 91715711 TATCCTTTGCATGCCAGGT 59 91715732 91715753 AGTCAAGTTCCCTGAATTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061708 ENSRNOT00000079211 1 1 1 60 8 20133516 20133537 CAATGACAATTCAAGCTTTCCC 59 20133558 20133576 TTTCAGGTCAGGGTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059707 ENSRNOT00000088524 2 1 1 72 16 14468597 14468615 GCGTCAGTATATGGCAGAG 58 14468649 14468669 GTTAGGTTACCCGTCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041652 ENSRNOT00000063405 1 1 1 60 X 63048954 63048973 TGAGGCTAAGCAGGATTGAC 60 63048994 63049014 TTTGTATTAACCCGCTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071210.1 ENSRNOG00000023330 ENSRNOT00000037171 2 1 1 63 8 104949514 104949532 ACTTCGCTAGCAAACAGGT 60 104949559 104949577 ATGGTTCTGACCAGTTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071482.1 ENSRNOG00000031483 ENSRNOT00000043247 3 1 1 60 8 118378177 118378197 TCAATGAAGTTCAAGCAACCG 60 118378216 118378237 GTAAGTACGGCAAGAAGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059165 ENSRNOT00000081287 2 1 1 60 17 20063403 20063423 TACAGAGAAGATTAGCATGGC 58 20063363 20063382 GGAACACTTCGTGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061284 ENSRNOT00000079519 3 1 1 60 4 176264352 176264372 CAACTGATGTGGTTAAGTGGG 59 176264312 176264331 TGAAACTAAGGCACCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA75 ENSRNOG00000052748 ENSRNOT00000080697 1 1 1 60 9 93369862 93369881 ACAGATTATGGATTCGCACG 59 93369821 93369845 CAGAAGATTAAGTGCTAGTTCTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.2 ENSRNOG00000051967 ENSRNOT00000082154 3 1 1 77 9 34389365 34389385 ATAAATGTGATCGCTTCTCGG 59 34389308 34389332 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064232.1 ENSRNOG00000053673 ENSRNOT00000085187 2 1 1 60 6 70289622 70289641 AATCCGGAAGAAGATTGAGC 58 70289664 70289682 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055112 ENSRNOT00000077634 3 1 1 60 1 193015754 193015773 CGACACAGAGAAGAGTAGCA 59 193015713 193015732 AACGCTTCATGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052285 ENSRNOT00000089539 1 1 1 60 6 21707456 21707474 CATGGCAGTCCTTTGTTCG 60 21707414 21707433 CATAAGACAGCTTTGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040918.1 ENSRNOG00000048586 ENSRNOT00000071600 3 1 1 65 X 114317451 114317469 TCACTTTGTAGACCAGGCT 58 114317498 114317516 TAGCACTCAGGAAGCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057784 ENSRNOT00000079550 1 1 1 60 X 107748224 107748242 AGAGGAAAGCGGCTATGTC 60 107748182 107748206 GACTAATCATTCAGATGTTCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056481 ENSRNOT00000082581 2 1 1 77 X 59952368 59952386 GTGATCATTTCTGCAGCAC 57 59952427 59952445 TGTCATCTTTGTGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052890 ENSRNOT00000089626 2 1 1 77 9 72452926 72452945 ATGAGATTTATCCGAGGCGG 60 72452868 72452886 AAGTAGTTCCCTCAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098157.1 ENSRNOG00000048063 ENSRNOT00000071496 2 1 1 89 X 5528845 5528863 ATGAGACCCAGCTGTAAGG 59 5528916 5528934 CAAGACTACCAGCTCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056313 ENSRNOT00000086604 3 1 1 61 X 32227781 32227799 GAGAAGATTAGCATGGCCC 58 32227823 32227842 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053375 ENSRNOT00000079056 2 1 1 65 6 117241414 117241432 AATCTGGCTGTGACATCTG 58 117241367 117241385 CTAGCCAGTCAGATCAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056159 ENSRNOT00000088019 2 1 1 61 X 119402174 119402192 GACTGCTGTATCCCATGTG 58 119402131 119402149 TGAGCATAGACACAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053606 ENSRNOT00000081699 1 1 1 60 9 94908385 94908403 CTGTCATGGGCAGAAACAG 59 94908425 94908445 TGTTAGGGAAGACAGAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052298.1 ENSRNOG00000056275 ENSRNOT00000084003 1 1 1 80 3 45699294 45699312 GTACCTATGAGCCAAGCCA 59 45699182 45699251 GATAGGAGACTCGATCGTGC 60 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000061905 ENSRNOT00000091515 2 1 1 89 6 49954997 49955015 TAGAACCATTGCAAGTGCG 59 49955068 49955086 GTCTGAACACTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059732 ENSRNOT00000078483 3 1 1 60 3 51437222 51437241 TACATGTGCGTCAGTAGGTG 60 51437181 51437203 GTCAGAACACTGAGAATAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.3 ENSRNOG00000053248 ENSRNOT00000087454 2 1 1 104 18 25360548 25360568 CTGTATTACTCCAGCACTCAC 58 25360457 25360478 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000057775 ENSRNOT00000083357 2 1 1 60 3 114321133 114321154 TCCTATGATTTCTCCACTACCA 58 114321094 114321113 GGAAAGCATGGATACAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126530.2 ENSRNOG00000053576 ENSRNOT00000074178 1 1 1 80 18 28125451 28125470 GAGGATGTGGAGAAAGAGGA 59 28125209 28125230 TATCCATTCCTCTGAAGGGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045087 ENSRNOT00000070354 3 1 1 60 1 177946047 177946066 GATCTCGGAAGCTAGGAAGG 60 177946089 177946107 GACTGATCTCCTTCTCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052223 ENSRNOT00000085999 2 1 1 60 6 77155022 77155041 GAATGATATCTGCCACTCCA 57 77154981 77155000 GCTAAGGAGAAAGGAGACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035238 ENSRNOT00000053361 1 1 1 60 X 106830688 106830707 CTCCCGATCTTGTTTGAACC 59 106830729 106830748 CCATCCAAGTACTAACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010421.1 ENSRNOG00000049767 ENSRNOT00000073517 2 1 1 60 2 134953886 134953908 GATGTTAGGTGTTTGAGATCCAG 59 134953848 134953867 TTGGCTTAGGTTCATTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.3 ENSRNOG00000054152 ENSRNOT00000080346 1 1 1 60 15 40494975 40494993 TAGGACTTTCATGGCTGGA 58 40495017 40495035 GTCTGCCTGTGTTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056717 ENSRNOT00000088756 1 1 1 60 3 8964879 8964898 GAGTTGGAATAGGAGCTTGC 59 8964838 8964856 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000058438 ENSRNOT00000080772 1 1 1 60 10 74757921 74757944 ACTAGAGAAGTTTCTCTGACTGTG 60 74757963 74757981 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052324.1 ENSRNOG00000049891 ENSRNOT00000071774 1 1 1 61 3 47572503 47572521 CAACCAACAGACTGGTGTG 59 47572460 47572478 GAGTGAGCCACTCAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119111.1 ENSRNOG00000055667 ENSRNOT00000086031 3 1 1 80 1 254513152 254513175 CTCCCAGAAGGAGAAATGG 57 254512204 254512224 AAGAGGGAAGAATTGTCTTCG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059930 ENSRNOT00000089566 2 1 1 60 1 9201952 9201972 AGAGGCTACATCTACACTCAG 59 9201991 9202012 AGGTTGGCTACTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052125.1 ENSRNOG00000047241 ENSRNOT00000072489 1 1 1 80 3 38017412 38017434 AGAACACATGACAACCCTG 58 38017477 38017496 TGTATTCTGTTGGTGAAGCT 57 Novel Rattus norvegicus 81 AABR07052125.1 ENSRNOG00000047241 ENSRNOT00000072489 3 1 1 81 3 38017414 38017436 AACACATGACAACCCTGGA 59 38017478 38017499 TCTTGTATTCTGTTGGTGAAGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055785 ENSRNOT00000089452 3 1 1 60 X 51229484 51229502 AAGGGTATAGGCGTAGCTG 59 51229442 51229464 CAGGATATTGAGAGCTTGTTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057592 ENSRNOT00000081504 3 1 1 60 7 143979118 143979136 CAACACAGAGATCCAGGCA 60 143979157 143979178 TGGAACACTTCATGTACTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058802 ENSRNOT00000079384 2 1 1 61 3 10355883 10355901 AGGGTAAAGGAACTCTCCA 57 10355925 10355944 AGAGGATTCAAAGAGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053333 ENSRNOT00000092038 2 1 1 60 17 24046674 24046696 GATACAGAGAAGATTAGCATGGC 59 24046636 24046656 GACTAGTTCACGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000049964 ENSRNOT00000064023 3 1 1 80 1 271231990 271233239 AGCTATTCTGTAAGGTCCCAC 59 271233279 271233299 CCTTCAGATCCGTACAGTCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054364 ENSRNOT00000089431 3 1 1 60 1 94897817 94897837 TACAGAGAAGATTAGCCTGGC 59 94897777 94897797 CAGAATGCTTCATGAATTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055600 ENSRNOT00000081857 2 1 1 62 X 27104677 27104696 AAATTAGTTTGTCAGGGCCC 59 27104720 27104739 AAATATGGAGTGCTCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058194 ENSRNOT00000084879 3 1 1 60 X 51000395 51000414 ACCCTAGAAGCATTGAAGGT 59 51000354 51000372 CTTTCTGCCATCTCCTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040918.2 ENSRNOG00000051839 ENSRNOT00000078839 1 1 1 60 X 114228877 114228895 TTCTAACAAGCTCCCTGGT 58 114228835 114228854 CCTTACTCAGTGTCTGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056315 ENSRNOT00000090261 2 1 1 60 2 223523979 223523999 AATTGGAACGATACAGAGGAG 58 223523939 223523957 ACGAATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066739.1 ENSRNOG00000061824 ENSRNOT00000080626 2 1 1 94 9 13846904 13846922 CAGCCTTGGTGAAGAACTG 59 13846980 13846998 CTACGACTTGTGCGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135310.2 ENSRNOG00000041899 ENSRNOT00000063652 1 1 1 69 8 22050627 22050645 GTGGGAAGCTAGAAGAGGG 59 22050576 22050594 CGGAATTGAAGGACCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060180 ENSRNOT00000078026 2 1 1 60 8 108159408 108159428 CCCTGAAGGCATTTATAGGGT 60 108159450 108159468 TTTCTGTGCTACCTACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021687.1 ENSRNOG00000054408 ENSRNOT00000071204 1 1 1 113 13 85519373 85519391 AAAGAGGCAACTTGAGCTG 58 85519470 85519488 CTATGTCTTTGTGGCCACC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044036 ENSRNOT00000069303 2 1 1 60 4 101014259 101014283 CTCAATCTTATCTGATCTCAGAAGC 59 101014223 101014245 TACCATCTAAGTACTAACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000061591 ENSRNOT00000082866 2 1 1 60 9 10325803 10325821 TCTTCACAGTCGGTCACAG 59 10325844 10325863 AAGCAGTAGTGAGAAGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000061788 ENSRNOT00000080151 3 1 1 60 2 18938134 18938153 ACATGCTACAGTGATGAAGG 58 18938172 18938194 ACTACTCAACCTCTACTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056460 ENSRNOT00000090901 1 1 1 60 2 63845639 63845659 GAGAAGATTAACATGGCTCCT 58 63845680 63845699 GATATGGAATGCTTCACGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057752 ENSRNOT00000087231 2 1 1 60 2 185578728 185578747 ATATGGAGGCAGTACAGGTG 59 185578687 185578706 AGTAGCCTCCTTCTACTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 2 1 1 61 X 57058452 57058470 CCAAACCAGAACTGGAGAC 58 57058241 57058430 TTTGTAACTTCCCACTACACTG 58 Novel DesignNoJunction Rattus norvegicus 81 Haus2 ENSRNOG00000048933 ENSRNOT00000076309 2 1 1 60 3 112371784 112371802 TACTGCTGAACCACTTGGT 59 112371822 112376250 GATCTGAGATCTGCTGTAATCTC 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA47 ENSRNOG00000044194 ENSRNOT00000069461 1 1 1 60 2 25046247 25046267 CTGCCTTCCATTGGTTAAGAC 59 25046289 25046307 AGAGGATGTTCTTTGCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061281 ENSRNOT00000077108 1 1 1 62 6 4557248 4557266 CAATGAGGTTTCTCCGAGG 58 4557289 4557310 CTTCTGAAATGGAAGCTAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051840 ENSRNOT00000079205 3 1 1 82 4 12183595 12183613 GTACTCACTTCAGCAGCAC 59 12183656 12183677 TTGCATGTTATCCTTGTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056068 ENSRNOT00000088830 3 1 1 60 6 133823320 133823338 GATGATGAGATCTGGTGGC 58 133823360 133823380 CAGATGTCTGGATACTTAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000055961 ENSRNOT00000084941 1 1 1 60 10 92417397 92417417 TTGCTAATAACCCACTGAGAC 58 92417357 92417375 ATCATGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097700.1 ENSRNOG00000057454 ENSRNOT00000077145 1 1 1 60 8 53361592 53361610 ACCCTCTTTCCAGTCTCCT 60 53361550 53361568 TGCTGTCATCCCAGAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142421.1 ENSRNOG00000056712 ENSRNOT00000084430 3 1 1 83 1 32192100 32192118 AGACTGCATGTCCATCCTG 60 32192030 32192052 TGTGACTGATCACTTCAGCT 59 Novel Rattus norvegicus 81 AABR07063314.1 ENSRNOG00000061354 ENSRNOT00000087575 1 1 1 92 6 28236838 28236856 GTCACATTCACACTCAGCC 59 28236912 28236931 CAAGACAACGGAGCAATGG 60 Novel Rattus norvegicus 81 Ifit2 ENSRNOG00000036604 ENSRNOT00000054757 3 1 1 86 1 252894868 252897541 GCAGTCATGAGTACAGCCA 60 252897591 252897609 TTCTGCTCTCAGGTTCCAG 59 Novel InUTR Rattus norvegicus 81 AABR07064634.1 ENSRNOG00000038771 ENSRNOT00000040085 2 1 1 60 6 88014177 88014196 TGATCAATGCTACCATAGCC 58 88014219 88014237 CCGATCAGAGACTTGTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053167 ENSRNOT00000079491 3 1 1 60 9 65918931 65918951 TGGAACAGTATGGAGATTAGC 57 65918972 65918991 GCTTCACAAATCTGCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056274 ENSRNOT00000081458 2 1 1 60 4 132947855 132947875 CTGCTATGTCATGTATGCGTC 59 132947815 132947835 CTGAGCATAAACCTAGTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000087865 2 1 2 85 2 52569790 52609298 GTCCAATGGGTTGAGAGCT 60 52569723 52569741 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AABR07039210.1 ENSRNOG00000057427 ENSRNOT00000079834 2 1 1 74 X 71961311 71961331 GCTAAGATTCTGGTTCCAGG 58 71961365 71961386 TGTCTTCCTTTATGGACTACTG 57 Novel DesignRelaxed Rattus norvegicus 81 LOC102546630 ENSRNOG00000051633 ENSRNOT00000090902 2 1 1 107 X 63999190 63999386 CCAATGTAGTGGAAAGGTGC 59 63999102 63999123 CTCTTCTTTGTAGGTGGTACAG 58 Novel Rattus norvegicus 81 AC099444.2 ENSRNOG00000052606 ENSRNOT00000088222 3 1 1 69 4 78227730 78227748 ATAAGCCATCCTCGCTCAC 60 78227781 78227800 GAGGAAAGGAAGTCCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058255 ENSRNOT00000087605 1 1 1 60 2 201153257 201153277 GCACATTAGTAGGTGACAGAG 58 201153217 201153235 CACAGGTCTGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056547 ENSRNOT00000082416 3 1 1 60 X 1791143 1791161 AATAGCTTGCTCTGTCCAC 58 1791185 1791203 CACCATTCCTAGTGGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053027 ENSRNOT00000082930 2 1 1 60 2 213451361 213451380 ATAGAGGAGGACCGAATAGC 58 213451320 213451339 TTTGGGCAAATCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052479 ENSRNOT00000083986 3 1 1 60 X 74879217 74879238 AATGCAGAGAAGATTACCATGG 59 74879178 74879199 GAATGCTTTGAGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059486 ENSRNOT00000088858 3 1 1 60 4 118170959 118170978 GTCTTCCTGTGGTTTGTTGG 59 118170997 118171019 TTCCAGATGGAATAGTCACTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054291 ENSRNOT00000082480 3 1 1 60 12 43997030 43997049 ATGTAGTAACGTTGGTGCGA 60 43996989 43997007 GCACATCATCCTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000057339 ENSRNOT00000077668 2 1 1 65 12 38496047 38496065 GATCCCTTCTCAGCCAGAG 59 38496000 38496019 TATGACGATGATCCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038786.1 ENSRNOG00000052270 ENSRNOT00000078053 3 1 1 62 X 60715571 60715589 GAGTCATCAATCCGGTTCC 58 60715348 60715368 CTCTTGGTCTTCTTTGTTGAC 57 Novel DesignNoJunction Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 1 1 1 60 3 76976073 76976092 ACGTGACTGAATTCATCCTC 58 76976112 76976134 AATAGAATTCTCTGAACCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051833 ENSRNOT00000080178 3 1 1 60 17 48581627 48581645 GTGACAGAGTGGAAAGAGG 58 48581585 48581603 GGTTCACATGGTCATAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0819.1 ENSRNOG00000051227 ENSRNOT00000076005 3 1 1 113 5 78042103 78042430 GATGTGGACAAGCTCAATGG 59 78042009 78042027 CAAGACATCGATGTGCTGC 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059668 ENSRNOT00000086527 1 1 1 60 12 347052 347070 TGAAGAATGCAGCTACCTG 58 347010 347029 GTTTCCATGATCAATGCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063601.1 ENSRNOG00000051657 ENSRNOT00000077176 1 1 1 81 6 36889040 36889062 AAGGACACTCATCGGTGTC 59 36888977 36888996 CTAGAAAGGAAGGTTTGCGG 59 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 3 1 1 89 1 214446760 214446782 GCCAGACTAGGAACACCAG 60 214446687 214446706 TATTTCAAAGCGTGGTTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027809.2 ENSRNOG00000054700 ENSRNOT00000085743 1 1 1 80 17 44533638 44533659 TGCTTTGCATGATGATAAGGC 60 44533571 44533593 ACCTCACTTCTCTATTTCTCCAC 60 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076368 3 1 3 62 2 121357876 121390081 GAGTCCTCATGGATCCACAG 60 121390105 121390124 GAAAGTGTTGTCTGGTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028150.1 ENSRNOG00000060132 ENSRNOT00000089527 3 1 1 94 17 57864978 57865517 AGGACCAGACTTCCATAATGG 59 57865571 57865591 ATAGCCATTCTCATGGTCTCC 60 Novel Rattus norvegicus 81 LOC367830 ENSRNOG00000042530 ENSRNOT00000017923 1 1 1 81 X 63066394 63109654 CTGGAAGTTCCTGAGGACC 59 63109698 63109717 CAGGTTGTCTCCTCTGACTC 60 Novel Rattus norvegicus 81 AABR07012377.1 ENSRNOG00000056468 ENSRNOT00000086434 2 1 1 83 2 194510510 194510529 CCTGAAGACTAGGGTCATGG 59 194509685 194510469 GAAGCATGAAGTATATTCCACTCC 60 Novel Rattus norvegicus 81 AABR07068214.1 ENSRNOG00000061442 ENSRNOT00000080956 1 1 1 82 9 91004025 91004917 GCTTTGAACATGTGTTACCA 57 91004962 91004980 TTGTTCAAGACTCAGCTGG 58 Novel Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000082903 1 1 2 80 1 48321215 48321233 CAGCAATACCAGCAACAGC 60 48321274 48321926 GCTACTGTTTCATTGCTATCGT 59 Novel Rattus norvegicus 81 Btnl5 ENSRNOG00000049946 ENSRNOT00000088972 2 1 1 89 20 2942099 2942119 GAATTTACTGCAAGCCCTCTG 60 2940637 2942048 GGAAACCCTTTGTGGTCAC 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546,ENSRNOT00000057756 1 2 5 80 6 115138797 115138816 CAAATGGATCAGATGCTTGG 57 115117818 115138756 CAAATCTTCCTTTAACTGCCC 58 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887,ENSRNOT00000076831 3 2 5 82 6 114770907 114780360 CCTTTAGGAACTCAATGTGTCC 59 114770846 114770865 GGAGTGATCTAGGCCATGAG 60 Novel Rattus norvegicus 81 AABR07052587.4 ENSRNOG00000061162 ENSRNOT00000080016 1 1 1 68 3 63929875 63929893 ATAACAAAGGCTCGCACTG 59 63929825 63929843 ATGTCCCTAAAGCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060497 ENSRNOT00000079888 2 1 1 60 2 101171979 101171997 AGTAGTGGAATCGCTCCTG 59 101172020 101172039 TCCCTATATTGCCCAAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.1 ENSRNOG00000018612 ENSRNOT00000025109 2 1 1 87 1 167918166 167918186 CACCACTCCTACTGTCACC 59 167918097 167918115 AGATCATGGCAGTCAGTCC 59 Novel Rattus norvegicus 81 AABR07003935.7 ENSRNOG00000048836 ENSRNOT00000071016 1 1 1 60 1 121263995 121264013 GGTTTCTACCACTCAGGCT 59 121263953 121263971 GGCTAGAGCCTGGAATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000058610 ENSRNOT00000091228 2 1 1 60 2 101977084 101977103 AGTTCAGTTCATGGAAACCT 57 101977126 101977144 AGCCAATTTCAATGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073485.1 ENSRNOG00000019107 ENSRNOT00000025907 2 1 1 60 9 66712784 66712803 GATGCTGTTCATCTACAGCC 59 66712743 66712766 CCTATCTGTATTTATGTCACCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073485.1 ENSRNOG00000019107 ENSRNOT00000025907 3 1 1 60 9 66712784 66712802 ATGCTGTTCATCTACAGCC 58 66712742 66712764 GCCTATCTGTATTTATGTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062599.2 ENSRNOG00000050557 ENSRNOT00000074530 2 1 1 61 4 183933809 183933832 CTCAATTAGTGATCAAAGGGAGAG 59 183933771 183933790 GACTACTAGCCCAGGAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566337 ENSRNOG00000054790 ENSRNOT00000085431 2 1 1 60 2 194875264 194875282 CCGCATTGAGATCCATGAC 59 194875222 194875243 GTAAATGAAGCCCATCATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054350 ENSRNOT00000088882 1 1 1 60 2 166806869 166806890 GTGTCACATGTACATCTGTAGG 59 166806830 166806850 GAACACTGAGCATAGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000059451 ENSRNOT00000087326 3 1 1 71 1 194988864 194988883 CCAGTCAAACATTCCTTGGA 58 194988812 194988830 CATTTCCGATGACAGTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008440.1 ENSRNOG00000055126 ENSRNOT00000083965 3 1 1 61 2 58647444 58647464 AAATGCCTCTATGAGATCCAG 57 58647403 58647421 GCCCTTCCTCCTTAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061802 ENSRNOT00000089067 2 1 1 60 1 244839397 244839417 GAGATATGGCTGTGACATCTG 58 244839436 244839457 TCCAGATCATCTGAATCAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059915 ENSRNOT00000084224 3 1 1 60 14 11184263 11184285 CTTTACAGGTAGTTAGCAGAGTG 59 11184304 11184323 CTTGTTTGAAGGTGCCTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052633 ENSRNOT00000078182 1 1 1 60 17 56593499 56593519 CATCTGTCACCCTATGATCAC 58 56593459 56593477 GACACCTGTCTAGACTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044699 ENSRNOT00000069966 2 1 1 60 17 25470960 25470979 CTCTGAACTTGCCTACTCTC 58 25470919 25470938 TACTAACCTGGTCCAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060641 ENSRNOT00000078084 1 1 1 60 14 92805283 92805304 TATATGTGTCAGTATGTGGCAG 58 92805244 92805262 AGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134632.1 ENSRNOG00000046877 ENSRNOT00000071225 3 1 1 69 12 47458490 47458508 ACTCTGTAGATCAGGCTGG 58 47458439 47458457 TTTAGTCCCAGCACTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061385.2 ENSRNOG00000060843 ENSRNOT00000078142 3 1 1 60 4 121089246 121089266 ACCGACATTTATGACCAACTC 59 121089288 121089306 GAAATGTGTCAGTTGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053977 ENSRNOT00000091462 2 1 1 60 14 3492121 3492141 AACAACCCAGAGATCATTACC 58 3492081 3492099 TCCTTCATGAGTTTGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_1002.4 ENSRNOG00000057321 ENSRNOT00000087976 2 1 1 80 14 100356718 100357094 ACAGAAGTTGAGGTTCGCT 59 100357138 100357156 AACACCTGGAAGAGCTCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053798 ENSRNOT00000080982 3 1 1 60 17 31301765 31301784 ACCACACCACATACTTATCC 57 31301806 31301825 TTTGACCAAAGACGATCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056120 ENSRNOT00000081666 2 1 1 61 2 55499896 55499914 CATGTGTCAGTAGGTGGCA 60 55499853 55499872 GTCCATAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 2 2 2 61 X 66516294 66516495 TGTTCCAAATGTAGTAGGAAGG 58 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC128786.1 ENSRNOG00000050026 ENSRNOT00000071789 1 1 1 97 1 102284411 102284430 GTAGCAGCTAGAAGAAAGGG 58 102284333 102284351 TCTAGAAGCTGCCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054983.1 ENSRNOG00000056555 ENSRNOT00000078261 1 1 1 82 3 177397951 177397972 GGATCCTTCACAGAAGAATCTC 58 177398013 177398336 CTTCCCAATTGTAGCCTACAG 59 Novel Rattus norvegicus 81 AABR07028668.1 ENSRNOG00000060417 ENSRNOT00000085909 3 1 1 61 17 79829485 79829503 GGTGATGCTGTTCGTTGAG 59 79829442 79829462 CTTTAACCAGCAGAATTGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057991 ENSRNOT00000084686 2 1 1 60 2 203106471 203106489 CTCTTTCTCCCTCACTGCT 59 203106429 203106449 TCTCTTCCAGAAAGGTTACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053325 ENSRNOT00000087275 3 1 1 80 2 86963713 86964183 TTGTGTTTCTGGGTCTTGC 59 86964225 86964245 TCTTCACAACTAAAGGCTCCT 59 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 3 1 1 110 2 221659317 221659336 TTTAAGGTGTTCCTTGGAGC 58 221659410 221659432 CAAACTGCACAGCCAAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000059537 ENSRNOT00000078018 2 1 1 60 1 105178697 105178715 GCCAATGAGGTTTATCCGA 58 105178737 105178757 AGTCCAGTGAAACACTAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055084 ENSRNOT00000077978 2 1 1 60 2 238839431 238839451 TCCTTGGTAGTGTATGTAGCC 59 238839471 238839491 CTGTTTCCAAGTTCCCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055158 ENSRNOT00000091183 1 1 1 60 1 84529947 84529968 ATACAGAGAAGATTAGCATGGC 58 84529908 84529928 GGAAGGCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046917 ENSRNOT00000074511 1 1 1 60 12 28997857 28997875 TACCATACTGGACATGCCT 58 28997898 28997917 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057436 ENSRNOT00000090132 2 1 1 60 1 139604455 139604474 ATTCTCAATGTGCTGACCCT 59 139604414 139604432 CAATCCATCCAGCTGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055396 ENSRNOT00000078801 1 1 1 60 14 43145692 43145713 AATTGGAACGATACAGAGAAGG 58 43145734 43145752 ACGAATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045369 ENSRNOT00000070636 3 1 1 60 1 29352850 29352870 CTTAGTGCTTTCGTGGTAGTC 59 29352889 29352910 CTAGAGCTGCTGTCTATATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055017 ENSRNOT00000087281 1 1 1 60 1 143658353 143658372 TATGTAAGTACCAGGCTCCC 58 143658312 143658331 TGTGTTCCTGATCCTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063516.1 ENSRNOG00000060052 ENSRNOT00000083144 3 1 1 101 6 33080627 33088533 GTACAGCAGTTGTTGTAAATGG 58 33080547 33080568 AAGAATGTCCTTAGGAAGACAC 58 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000057368 ENSRNOT00000078742 3 1 1 60 2 155475184 155475203 GGTGACAGAGATGACAGAGG 60 155475143 155475163 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052296.1 ENSRNOG00000055541 ENSRNOT00000090213 2 1 1 67 3 45498243 45498261 AGTACTGGGTTTGGAATGC 58 45498094 45498113 AATAAATCGTCATGGTGGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AC126572.3 ENSRNOG00000056197 ENSRNOT00000082327 2 1 1 71 12 13284067 13284085 TTTCTCAAACTCCCGTCCC 60 13284010 13284030 CTGATCACAACAAGCAAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0829.4 ENSRNOG00000051100 ENSRNOT00000076902 3 1 1 87 13 77983548 77987971 GCAGTAAAGGGTAAGATGATGG 59 77983482 77983500 CTCTACTTATGGCCACGGG 60 Novel Rattus norvegicus 81 AABR07014426.1 ENSRNOG00000053903 ENSRNOT00000083237 1 1 1 80 14 15461681 15461724 TACTTTGGAAAGATGGCACC 58 15461620 15461642 GATACACTTGGTTTCTCTGTCTC 59 Novel Rattus norvegicus 81 AABR07065049.1 ENSRNOG00000036502 ENSRNOT00000054610 1 1 1 60 6 106143530 106143549 ATACTGTACACATGGGCTGG 60 106143572 106143590 ATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844 2 1 2 80 13 78982551 78985135 TTCCTGAAGCAGACAAGGA 59 78982489 78982507 GTGTTCGTCATTACTGGCT 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000054881 ENSRNOT00000084219 3 1 1 65 2 234693460 234693479 AATGAGGTTTATCCGAGGTG 57 234693414 234693433 ACAGCTGATCTTGTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057242 ENSRNOT00000079970 2 1 1 60 1 58787409 58787431 GGAACGATACAGAGAAGATTAGC 59 58787451 58787469 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047011.1 ENSRNOG00000008861 ENSRNOT00000011720 2 1 1 84 5 15087574 15087593 AGTTACTTCACCCTACTGGG 59 15087640 15087660 TCTCAGGAGCTTCTGTCTG 58 Novel Rattus norvegicus 81 AABR07004743.1 ENSRNOG00000050403 ENSRNOT00000074311 1 1 1 60 1 153772131 153772152 GTTAGTCATGCATATGGGTGTG 60 153772171 153772191 GACCAATAGAAGCAGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060908 ENSRNOT00000084992 3 1 1 66 2 243616760 243616780 GTGCTGACCCTTATGATTGTC 59 243616808 243616826 AACACAGCCTTCCACTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053390 ENSRNOT00000085446 2 1 1 60 4 11558126 11558145 ACACATGCTTCAGTAAGTGG 58 11558165 11558186 GGTTAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002906.1 ENSRNOG00000048447 ENSRNOT00000074997 2 1 1 80 1 88780026 88780047 ACCTTTCTCTGTCTGTCACC 59 88780088 88780108 AGTGATGCCCTAAAGAATCCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051379 ENSRNOT00000085090 3 1 1 60 1 24333816 24333838 GATACAGAGAAGATTAGCATGGC 59 24333778 24333796 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054759 ENSRNOT00000086068 1 1 1 60 1 121575471 121575492 ACAACAGAAAGTCAAGAACAGG 59 121575513 121575531 TCAGCGTAATCCTATTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053119 ENSRNOT00000091358 1 1 1 60 14 62552043 62552062 TAGGTGGCAGTGAAGTAAGG 59 62552083 62552103 ATTCAGGTACTCACAGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC242953.1 ENSRNOG00000056639 ENSRNOT00000080441 1 1 1 80 Y 853036 853147 AGACTACTTTAAGACAGAGCAC 58 853185 853206 GGCATAAAGAAGGAATAGAGCA 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000056604 ENSRNOT00000091059 3 1 1 60 14 92144184 92144203 GGAGATCTCGTGGTCATGAG 60 92144143 92144162 CCTAGACTGCGATGGATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024877.1 ENSRNOG00000058038 ENSRNOT00000083254 2 1 1 80 16 20640688 20640706 ATCACTCTGCATCCATCCA 59 20639811 20640284 CCTGTCAGCTTTCTTCTCAC 59 Novel Rattus norvegicus 81 Rn60_9_0429.1 ENSRNOG00000051277 ENSRNOT00000076303 3 1 1 101 9 43139409 43145241 CTTGGGAGTCAAGGTCTAGG 59 43145728 43145746 GATCAGTGGGTGAGTCTCC 59 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 1 2 5 97 2 123761677 123762138 TCATTACAAGATGCCAACGTG 59 123762197 123762215 ATGATGAGCTCAGCATCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055865 ENSRNOT00000081814 2 1 1 61 12 37915389 37915407 ACAGAGATTAGCATGGCCC 60 37915346 37915365 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060969 ENSRNOT00000088467 1 1 1 60 1 90304248 90304270 CATAGATTTGACTGTTCTGGCTG 60 90304210 90304228 CATGAAGTGGTGAGGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072371.1 ENSRNOG00000002200 ENSRNOT00000002990 1 1 1 60 14 10624785 10624804 AGATTGCAGAGTTGAAGAGG 58 10624825 10624845 TTCCTTAGTCTTTCGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060056 ENSRNOT00000085392 1 1 1 60 1 43982709 43982729 GCACAGAGAAGATTAGCATGG 59 43982750 43982769 GGAACGCTTCACAAATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057154 ENSRNOT00000079164 3 1 1 60 1 251643636 251643655 GAACCAACAAACAAGCTCTC 58 251643595 251643616 CTTGTATTCCTCTCCCATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000055875 ENSRNOT00000079884 1 1 1 60 14 105906728 105906746 AAGCCCTCATGGAGTAACC 59 105906769 105906788 CAGTACCCTGAGAAATGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055908 ENSRNOT00000088162 2 1 1 60 6 136005853 136005872 TGTCTGACACAATTTGAGCT 58 136005894 136005913 GAAGAGAACACCGGAATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056117 ENSRNOT00000082807 2 1 1 60 14 56222775 56222793 GGTTCTTGTGTCACATGGT 58 56222733 56222754 ATGCTGAGCATAGACATATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061433 ENSRNOT00000079463 2 1 1 64 6 133753220 133753240 ACCAGTGATGAGAATTCTGGG 60 133753266 133753284 GACCTCAGAGTTACAGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058884.2 ENSRNOG00000057943 ENSRNOT00000079811 3 1 1 80 7 141642784 141643160 TTGTAGAGGTGACATCTAAAGG 57 141643200 141643219 CATCTGGATTTCCAGAAGGA 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045043 ENSRNOT00000070310 3 1 1 64 10 89437342 89437360 TGGAAGTTACGCAGGATGG 60 89437387 89437406 TTATGACATTGGTGCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065363.1 ENSRNOG00000061478 ENSRNOT00000090405 2 1 1 91 6 124210168 124210186 TAATTCTCCTGCTGCTCCC 59 124210241 124210260 CAATCTGCCAAGACAGCAG 59 Novel Rattus norvegicus 81 Rn60_20_0055.15 ENSRNOG00000056189 ENSRNOT00000092081 2 1 1 60 20 3307076 3307094 TGTGAGGGAAGTAAGAGGG 58 3306839 3306857 AGACATCTTCAGACTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000053423 ENSRNOT00000071507 2 1 1 60 13 34148830 34148848 TTCTCTGAGGAGGAATGGG 58 34148870 34148890 TGACATCTCTGTACAAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0056.5 ENSRNOG00000052122 ENSRNOT00000090050 1 1 1 60 20 3403550 3403571 GAGCGAACATGTAAATACACTG 58 3403511 3403529 TGCTTTCACTCCATGTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017669.1 ENSRNOG00000052737 ENSRNOT00000081778 3 1 1 98 15 29922271 29922483 CAATTTAATTGGGTGAGCAGC 59 29922193 29922212 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AABR07017745.2 ENSRNOG00000051843 ENSRNOT00000086842 1 1 1 84 15 30525792 30525941 AATGTTTGGAGGAAGCAATGG 60 30525986 30526005 GTTCACAGTCAAAGAAGCCC 60 Novel Rattus norvegicus 81 AABR07013288.4 ENSRNOG00000053387 ENSRNOT00000091475 3 1 1 80 2 231943169 231943366 CCAACACTGTAAAGGAAGGG 59 231943407 231943427 TACTCTTTCAGAAGACGGTCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052529 ENSRNOT00000085507 1 1 1 60 1 98742932 98742954 GGAACGATACAGAGAAGATTAGC 59 98742894 98742914 CTTCATGAATTTGCCTGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.2 ENSRNOG00000053710 ENSRNOT00000087944 2 1 1 60 1 1888949 1888971 CTGACTTACATAGTCCTTCTGAG 58 1888911 1888930 CCTGGCTCAATACTGATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014524.1 ENSRNOG00000055589 ENSRNOT00000079822 1 1 1 80 14 19281747 19281767 AGCAAACAGCATTTGTTGGA 59 19281813 19281831 TCATCTTCTGAAGAGGCGT 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000061001 ENSRNOT00000082243 3 1 1 63 3 163059818 163059837 CAGAGAAGATTAGCATGGCC 59 163059862 163059881 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056494 ENSRNOT00000080284 3 1 1 61 1 249539924 249539944 AGAGGCGATGTTTATGTTCAG 59 249539965 249539985 GGCTGCTAATGAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627,ENSRNOT00000091377 2 2 2 95 1 254531927 254531946 ATCCAGAAATGAACCCACAC 58 254532004 254532024 AGCACCATTTGCTAAAGCT 58 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258,ENSRNOT00000090885 1 2 2 84 13 96009580 96009602 GGACAGTATCCTGTCATATACAC 58 96009646 96017767 GAATGATCCAGGTTCCGTC 58 Novel Rattus norvegicus 81 AABR07017763.2 ENSRNOG00000060389 ENSRNOT00000078887 3 1 1 97 15 30735962 30736173 GTTTAATTGGGTGAGCAGCC 60 30736231 30736251 CACTGAATGTGCAGTTGAGAG 60 Novel Rattus norvegicus 81 AABR07061979.1 ENSRNOG00000053906 ENSRNOT00000047507 1 1 1 60 4 155702946 155702964 GGTGACCCGAGAATACACC 60 155702904 155702922 CTTCTTGAAGCCCACTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061979.1 ENSRNOG00000053906 ENSRNOT00000047507 2 1 1 60 4 155702916 155702934 CAAGCTCATCCATGGAGTG 58 155702874 155702893 TCGAATTTCTTTGAGTGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000055445 ENSRNOT00000081564 2 1 1 60 12 44894771 44894790 CAAACCAGTCAGTGGAAGAG 59 44894813 44894831 GATCCCATGGCTATGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_18_0774.1 ENSRNOG00000061786 ENSRNOT00000088260 3 1 1 81 18 78277511 78280863 CAGGGTATGGGCAAATTGG 59 78280908 78280926 CTCTCAGTAAAGGCCTGGA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061123 ENSRNOT00000080893 1 1 1 60 2 205892262 205892280 TGACTGCTATGTCACAGGT 58 205892304 205892322 AGCATAGACTTGGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132028.2 ENSRNOG00000057419 ENSRNOT00000089105 2 1 1 60 3 77961361 77961385 GGTCTATCTGCATCATAATCTTCTC 59 77961325 77961348 GAGAACAAGATAACACCATAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000046264 ENSRNOT00000073425 3 1 1 60 18 30425994 30426012 TCAGCATCTTCAGAGTTGG 57 30426035 30426054 ATAGAGCAAACCACCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055350 ENSRNOT00000089137 3 1 1 61 1 254303900 254303921 GGACAATTCAGGGATGATTAGC 59 254303860 254303879 AAACCTACTCACATGCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004799.1 ENSRNOG00000010769 ENSRNOT00000014369 3 1 1 61 1 157920960 157920978 TTGTCCAGACTTCCGAAGG 59 157920917 157920935 ATACCCTTCGGTTTCGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004961.1 ENSRNOG00000059893 ENSRNOT00000081313 1 1 1 60 1 172861129 172861147 TATCTGCTCACCTCTGCTC 59 172861167 172861189 CACTAGGAGAATACAAACTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055440 ENSRNOT00000080042 2 1 1 60 1 116761855 116761875 CAACAGAAAGTCAAGAACAGG 58 116761815 116761834 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057237 ENSRNOT00000089773 3 1 1 60 2 137252558 137252578 TGTACTGACCCTGAGATTTCC 59 137252518 137252540 CCTACTACCACAAACTATACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108631.2 ENSRNOG00000055424 ENSRNOT00000082046 3 1 1 60 1 228450817 228450838 ATATTTGTGGAGAGTGTCACAC 59 228450778 228450797 TTGCATCTGATTGGATCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057431 ENSRNOT00000090249 1 1 1 63 2 186408837 186408855 GTGTCAGTAGGTGGCAGAG 60 186408879 186408900 AGATGTTCATTGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004021.1 ENSRNOG00000047301 ENSRNOT00000071117 3 1 1 60 1 122653678 122653696 AGCTCTAAGCTGGATCCAG 59 122653636 122653656 CCTTCTCTATTGAGCAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052179 ENSRNOT00000080671 1 1 1 60 1 190936399 190936417 GGCAGTCCTTTGTTCATCC 59 190936357 190936376 TAGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000058027 ENSRNOT00000082817 1 1 1 64 2 198849059 198849077 CAAGTTCTGCTGCTCATGG 59 198849013 198849031 CTGCAGCCAAACTTATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054271 ENSRNOT00000084997 1 1 1 60 2 198503324 198503345 GACACAGAGAAGATTAGCATGG 59 198503366 198503384 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057303 ENSRNOT00000086462 1 1 1 60 1 100213588 100213607 TGGTTGGTTCGACTAATCTG 58 100213630 100213648 ATAGAGTGGTGAGGGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 2 1 1 63 X 147586539 147586561 ATCTACCCGAATACATTCGTG 58 147586496 147586517 GCTTATTATTTCCCAGATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049347.1 ENSRNOG00000055254 ENSRNOT00000084226 1 1 1 91 5 117948628 117948647 AGCCATGTGATTCTCAATCC 58 117948700 117948723 AACTGCTGTATCTCATTGGG 58 Novel Rattus norvegicus 81 U2 ENSRNOG00000060014 ENSRNOT00000091246 3 1 1 60 9 60527138 60527159 TAGAAGCAGGGAGATAAGACAG 59 60527178 60527198 CAATAAGAGGGTGATTTGTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061807 ENSRNOT00000079387 1 1 1 60 1 146766593 146766611 GAGAAGATTAGCATGGCCC 58 146766551 146766569 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061674 ENSRNOT00000079878 2 1 1 60 1 253866780 253866798 CATAGAGGCATTGCTGGAG 58 253866816 253866840 TCTCCTCTACCATGTATTGATACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027799.1 ENSRNOG00000056731 ENSRNOT00000077512 1 1 1 60 17 44420025 44420046 AGCTTATTGACTTTGGACTCAG 59 44419986 44420007 GTCTGAATATACTTCACGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052697 ENSRNOT00000091627 1 1 1 60 1 88769665 88769685 AGACAAGCTATGGATAGTCCC 59 88769707 88769725 TACACATGCCCACATAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052937 ENSRNOT00000081298 2 1 1 60 1 241451147 241451166 TGCTGTGTCACATGTATCAG 58 241451189 241451207 GGTCATCTTGGGTCATGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057423 ENSRNOT00000078539 2 1 1 60 1 147397273 147397294 ATACAGAGAAGATTGGCATGAC 58 147397314 147397333 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129054.1 ENSRNOG00000048460 ENSRNOT00000073887 3 1 1 92 10 12565030 12565048 ACATTGTGGAGCATGTGTC 59 12562657 12564974 ACATTGAGCTACCTGAGGA 58 Novel Rattus norvegicus 81 AABR07060963.2 ENSRNOG00000059176 ENSRNOT00000086458 1 1 1 82 4 101909425 101909807 CTCTGGATCCAGGAAACCC 60 101909853 101909871 GAGGCTGATTGTCCAATGG 59 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000053158 ENSRNOT00000090056 3 1 1 60 1 128534865 128534885 CACTTTGGGAGTATATGCAGC 59 128534825 128534844 TTGTCTCCAATGTCCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076556 1 1 3 97 2 208416314 208419705 GGTCCAGGTTTGTATAATGGT 58 208416237 208416255 CAGGAAGAGGTGGTAGAGG 59 Novel InUTR Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076666 3 1 3 115 2 208420019 208420037 ATCTTCGCAGACAATGCTG 59 208416279 208416297 GAAAGACCCTTGTTGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061131 ENSRNOT00000085388 3 1 1 60 13 99460398 99460419 GATACAGAGAAGATCAGCATGG 59 99460439 99460458 GGAAAGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052548 ENSRNOT00000086446 1 1 1 60 14 86688788 86688808 TGCATATTCCTACGACTTCTC 57 86688830 86688848 CTGCATGGTTTGTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061536 ENSRNOT00000089967 1 1 1 60 5 150529767 150529786 CCTACGACTTCTCAGAGTCC 59 150529726 150529744 GCATGGTTTGTCTCCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052544 ENSRNOT00000082610 2 1 1 68 14 5375517 5375535 TGTTGAGTTCAGTTCAGGG 57 5375467 5375488 CTTAGTCACTTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055601 ENSRNOT00000079706 1 1 1 84 14 56859575 56859593 TTGAGTTTATCCGAGGCAC 58 56859509 56859530 CAAAGAGAATCAGTAGTCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012313.1 ENSRNOG00000009445 ENSRNOT00000012507 3 1 1 134 2 192953057 192953075 TCTGGATGCTGTAGCAGTG 60 192953173 192953192 GTCTTCCTCACTGAGGTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057616.1 ENSRNOG00000047173 ENSRNOT00000074257 2 1 1 66 7 80411777 80411795 AAGACACAGTTTCCACTGG 58 80411822 80411843 GAAATTCTGTGCATACTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057616.1 ENSRNOG00000047173 ENSRNOT00000074257 3 1 1 66 7 80411777 80411796 AAGACACAGTTTCCACTGGA 59 80411822 80411843 GAAATTCTGTGCATACTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129753.2 ENSRNOG00000055799 ENSRNOT00000090617 1 1 1 60 10 55617757 55617778 CAGCTTCAGAAGTTCTGTAGTC 59 55617796 55617817 CAATGGATTTCTAGTCCATCGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061843 ENSRNOT00000084247 2 1 1 60 5 109672148 109672169 GGAACGATACAGAGAAGATTCG 59 109672109 109672127 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061843 ENSRNOT00000084247 3 1 1 61 5 109672146 109672165 CGATACAGAGAAGATTCGCA 58 109672104 109672122 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057511 ENSRNOT00000082306 1 1 1 60 13 89311798 89311816 GGCTTATCCATTGCACTCC 59 89311840 89311858 GAGTTTCCCGCATTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044576 ENSRNOT00000069843 3 1 1 61 1 129014457 129014475 CTAAACATGCCCAGTCTCG 58 129014414 129014432 ACATACTAACCAGGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058789 ENSRNOT00000088518 3 1 1 60 10 36724205 36724223 TGGGCCAATTGAATCTGTC 58 36724247 36724265 AATGGATCCCAGCTGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052715 ENSRNOT00000085532 1 1 1 60 4 96577107 96577127 CTGTCCCTAGAGGTGTTACAG 59 96577067 96577085 GCACTGAGGACAGACAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054161 ENSRNOT00000082510 1 1 1 60 5 27614483 27614501 GTGGCAAGAAGCAGATAGG 58 27614441 27614462 CGGAATGTTGTTCATAGATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044719 ENSRNOT00000069986 3 1 1 60 5 25704515 25704533 ATCTCGGAGGTTAAGCAGG 59 25704555 25704575 TTTGAGAACTTCTGTCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056282 ENSRNOT00000077747 2 1 1 60 10 6694420 6694439 GTGAAGTCAGTCTAGGAGGT 58 6694460 6694480 CCTTGAAAGAAGAATGGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053475 ENSRNOT00000085627 1 1 1 60 3 61498748 61498769 ACGATAGAGAAGATTAGCATGG 58 61498709 61498727 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072916.1 ENSRNOG00000061523 ENSRNOT00000085319 1 1 1 60 3 112916626 112916644 ACCTGCTCAGGTGAATGTC 60 112916584 112916606 GATAATGTGTCTCTGTCCAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 3 2 4 115 X 73466670 73467008 TTCATGAAGGGTTTGATGGAC 59 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000055313 ENSRNOT00000082213 2 1 1 60 3 58503771 58503791 GTGAATACTCTCATAGTGCCC 58 58503813 58503831 ATGGAGGCAATGGTTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000058631 ENSRNOT00000084205 1 1 1 60 20 27933134 27933152 AGACCAAAGAAAGTGGCTC 58 27933092 27933110 TCAGACTCCCAATGTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034610.1 ENSRNOG00000056908 ENSRNOT00000090657 3 1 1 81 11 81261129 81261149 AGACTGAAGAGGCTTTCCA 58 81261194 81261214 GCTAAAGCAAAGCATTCAGTG 59 Novel Rattus norvegicus 81 AABR07017110.1 ENSRNOG00000005869 ENSRNOT00000007696 2 1 1 60 15 11650732 11650750 CAAAGAAGCCATCAGGGAG 58 11650774 11650792 GAACAAGTCAGTCTGGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049554.1 ENSRNOG00000043738 ENSRNOT00000069005 3 1 1 64 5 128398355 128398373 CACTTTGTAGTCCAGGCTG 58 128398309 128398327 CAGCACTTAGGAGGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055462 ENSRNOT00000078694 2 1 1 60 10 65247465 65247483 AAGATAGCGTGACTATGGC 57 65247423 65247443 CTCCAATGTTAGGATCAATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054915 ENSRNOT00000083685 2 1 1 60 1 168652565 168652585 TCTTCCTGTGGTTTATTGGCT 60 168652525 168652548 CTTCCAAATGGAATAGTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055243 ENSRNOT00000091158 3 1 1 60 3 152392184 152392202 TTGTTGGTGTTCTCACGTC 58 152392142 152392160 AGCTAGGATGAGCAAAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057170 ENSRNOT00000082641 3 1 1 60 4 116823538 116823556 GCTGCTATGTCACATGTGC 60 116823496 116823516 TGAGCATAGACAAAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060959 ENSRNOT00000086837 3 1 1 61 3 66285402 66285422 GAAACAGATGAAGAGCTTGAC 57 66285442 66285463 GTGGAATACACCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053198 ENSRNOT00000088927 1 1 1 60 13 19138305 19138327 GGAACGATACAGAGAAGATTAGC 59 19138347 19138365 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014882.1 ENSRNOG00000057975 ENSRNOT00000088178 1 1 1 80 14 35776280 35776298 CTGTCCTCACCTCTTGCTC 60 35776217 35776238 TCCATCTCTGAAGAACCACTG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000053911 ENSRNOT00000080515 1 1 1 60 20 45874497 45874517 TCTAGTTCTGTCACTCCACTG 59 45874539 45874557 ATTCCATCTAACCAGCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059524 ENSRNOT00000089214 2 1 1 80 1 116773644 116773663 GGGTCTATGTCGATGATAGC 58 116773583 116773604 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054387 ENSRNOT00000090469 1 1 1 61 10 76205601 76205619 AGAGAAGATGAGCATGGCC 60 76205644 76205662 AATATGGAACGCTCCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 3 1 1 61 3 79151583 79151602 CAGCCATTATTCAAGCTTGC 58 79151539 79151559 CTGTTGGCCATCACAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000055819 ENSRNOT00000087345 1 1 1 60 6 95402902 95402920 ACCGGTTTCAGTCAAAGGT 60 95402943 95402962 TCTTGTTCGGAGGTTCTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059234 ENSRNOT00000082362 3 1 1 60 10 43392193 43392211 TTACACCTGCAGATGAGGA 58 43392234 43392253 TTTGACCAAAGACCATCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021840.2 ENSRNOG00000048479 ENSRNOT00000075519 1 1 1 60 13 94942047 94942068 CAAAGCAGCAATTGTTCTTTGG 60 94942088 94942107 TCGGTCTTTCAGACAGAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0812.2 ENSRNOG00000058128 ENSRNOT00000090235 2 1 1 81 9 81399147 81399166 AGCAGCAGAATGAAACAAGG 59 81399210 81400070 CGTGGTTTCCTTGATGCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059767 ENSRNOT00000079748 3 1 1 68 15 12660694 12660716 GGCAGTACGTATACTAAAGTTGG 59 12660648 12660666 ACTTATGTGCCATCCTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126292.1 ENSRNOG00000050606 ENSRNOT00000073623 2 1 1 60 5 135611003 135611024 TTAAACTCAGAGATTCACCTGC 59 135611044 135611063 GTGACACAGGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040834 ENSRNOT00000062587 2 1 1 60 13 66920075 66920096 CTGATCTCAGAAGCTAAGTAGG 58 66920036 66920054 GTCAAGATGTCTCCCATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054094 ENSRNOT00000077343 1 1 1 60 13 49302652 49302673 ATACAGAGAAGATTAGCATGGC 58 49302613 49302633 GGAATGCTTTGCAAATTTCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051537 ENSRNOT00000077860 1 1 1 60 1 245891063 245891084 CTGACTGTTCCTTAGCATTTCC 59 245891104 245891123 TTATTGTAAGGCCCAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043975 ENSRNOT00000069242 3 1 1 60 3 117069831 117069852 AATATCCTCTGTTCTTGGAAGC 58 117069870 117069891 TTCTCCTGTCCAAGAACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029836.1 ENSRNOG00000052646 ENSRNOT00000079764 3 1 1 80 10 53922301 53923009 GTCTCCTCAATTCAGAAGGGA 59 53923229 53923250 GAGTTTCAGGTTTAGGCTTGTC 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000053018 ENSRNOT00000078983 1 1 1 61 10 37419679 37419697 CAATGGTGGCAGACAACAG 60 37419722 37419740 GGAGCAATCCAAACAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054692 ENSRNOT00000079920 2 1 1 60 7 81043750 81043772 GGAACGATACAGAGAAGATTAGC 59 81043712 81043730 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052133 ENSRNOT00000091631 1 1 1 73 13 68441069 68441087 AATGAGGTTTATCCGAGGC 57 68441014 68441033 ACTGCTTCAAAGATACACGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052133 ENSRNOT00000091631 2 1 1 73 13 68441068 68441086 ATGAGGTTTATCCGAGGCG 60 68441013 68441033 GACTGCTTCAAAGATACACGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060813 ENSRNOT00000091160 1 1 1 60 13 100452044 100452063 TGAAGCTAAACAGGAGAGGG 59 100452003 100452025 CATCCAATCACTGTCATTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058985 ENSRNOT00000083032 3 1 1 60 13 109802338 109802356 CTCCATTGAGGAAGACGAC 58 109802380 109802398 TTCCATACCCTGACCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058332 ENSRNOT00000084623 2 1 1 60 6 29971573 29971594 ATACAGAGAAGATTAGCATGGC 58 29971534 29971553 GGAAGGTTTCACCAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060816 ENSRNOT00000083744 2 1 1 60 10 56274192 56274210 ATGTTGGTGGTGTTGTTCC 59 56274150 56274171 GATGAACAAAGGCCTACATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058706.1 ENSRNOG00000054803 ENSRNOT00000080179 1 1 1 60 7 133979817 133979839 GTATTGAGACTAGAGTCACATCC 58 133979858 133979877 TACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054493 ENSRNOT00000080198 2 1 1 60 15 27739023 27739041 TTCGAGTTCAATGGCTGAG 58 27738981 27739004 GAGTAGTCTGAATTGGGTTATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061641 ENSRNOT00000078641 3 1 1 61 15 101505232 101505250 GGACTTTGGTGTGCAATGG 60 101505271 101505293 GACAATAGGCTACATACACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000054644 ENSRNOT00000080954 1 1 1 60 X 125425676 125425694 ATAGTGTCCCGTGCTAGAG 58 125425718 125425736 CCTACATACACCGAGGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057067 ENSRNOT00000081232 1 1 1 61 5 156191672 156191690 CTGAGACGCGATTATTGCT 58 156191715 156191733 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056452 ENSRNOT00000088371 1 1 1 60 X 11888102 11888120 GTGTTCACTTTGTCAGCAC 58 11888060 11888079 AGGGACCATGCTAATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.1 ENSRNOG00000058558 ENSRNOT00000085868 3 1 1 71 X 128298542 128298560 AAATTCCCAAGGCTTCTGG 58 128298593 128298613 CTGGGAACTTGTTAGAATTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061077 ENSRNOT00000084064 3 1 1 60 15 80581193 80581215 GATACAGAGAAGATTAGCATGGC 59 80581155 80581173 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054785 ENSRNOT00000081929 2 1 1 60 1 241292960 241292979 AGCCAATGAGGTTTATCCGA 59 241292999 241293020 CCTATGGTACTGGTGTATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000059686 ENSRNOT00000086923 3 1 1 74 5 165438645 165438663 TTGCTAATGACCTGCTGAG 58 165438589 165438607 CAACAAGTTGCCACTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055815 ENSRNOT00000085244 2 1 1 60 20 20782604 20782623 GAACATGTTCCTGTTTGTGC 58 20782563 20782583 GTGAATCAGAATCAGACACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061780 ENSRNOT00000091633 1 1 1 60 18 35102752 35102775 GAAGCTGTCTGTTCTACTAAAGAG 59 35102792 35102812 CAACTAAAGTCTGGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA14 ENSRNOG00000053462 ENSRNOT00000086085 3 1 1 60 19 59872558 59872577 ATTCTTAAACCCTCTTGGCG 58 59872517 59872540 GTCTAGCATTCACTCATATCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoMBII-202 ENSRNOG00000054310 ENSRNOT00000078041 1 1 1 73 19 55918127 55918145 ATGACATTCTCCGGAATCG 57 55918182 55918200 AAGCTCGTAGTCAGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061145 ENSRNOT00000079587 1 1 1 60 15 44254191 44254210 GTCACTGTGCATCAGTAGGT 60 44254232 44254251 TCACAACACTGGGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031738.1 ENSRNOG00000055037 ENSRNOT00000090160 3 1 1 97 18 31114014 31114033 GAGAAGGAAGAGGCTGAAGG 60 31113936 31113954 GATAGTGAGCTGTTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053136.1 ENSRNOG00000060735 ENSRNOT00000091164 1 1 1 60 3 93648449 93648467 GAGAAGCTGTGTCCTCTCC 60 93648491 93648509 AAACAGGTCAGAGGATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060156.1 ENSRNOG00000027692 ENSRNOT00000038047 3 1 1 60 4 60054390 60054410 GTACAAAGAACAACCAGCTCC 60 60054428 60054450 CTAGTGAAGCCACATTTATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049541.1 ENSRNOG00000052771 ENSRNOT00000080647 2 1 1 90 5 127755629 127755795 TTGGGAACTGGATAGAAAGGA 59 127755953 127755973 GGTGATTAAGAAGAGACCAGC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056090 ENSRNOT00000078357 2 1 1 60 4 40615246 40615266 TTATCAGTTGAGTGACAGAGG 57 40615285 40615306 GTACATAGGTTAGAACACCGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053579 ENSRNOT00000087004 2 1 1 60 15 37261531 37261550 TGGCAGCACATACGATAGAG 60 37261490 37261509 ATTTGCATGTCATCCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051406 ENSRNOT00000089687 3 1 1 60 18 4314605 4314624 GAGGAGGAACATTCTTCAGG 58 4314645 4314665 TCGCAAGTTTGTTCTAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057971 ENSRNOT00000090229 2 1 1 61 7 17460923 17460944 CAGATCGTATAAATCTTTCGCC 58 17460965 17460984 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060256 ENSRNOT00000079484 3 1 1 60 1 61398323 61398341 ACCTCTTATGGCCCTAACG 59 61398281 61398299 CCCTGCTATCTGGGAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000385.1 ENSRNOG00000055421 ENSRNOT00000089608 2 1 1 60 1 11873245 11873265 GGCATTGCAGTTGATATTCTG 58 11873286 11873305 TAAACGAGGACCATGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058532 ENSRNOT00000089267 3 1 1 61 10 66946186 66946206 TCACCATACAGAGACTCACAC 59 66946228 66946247 GACCGTTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000059688 ENSRNOT00000084835 3 1 1 60 10 83253800 83253819 AGGCTATTTGGCAGAATGAG 58 83253839 83253860 ACCATACTAAGTGGTATGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054705.1 ENSRNOG00000059645 ENSRNOT00000085779 1 1 1 80 3 167219682 167219703 CTGAATCCTTCTCAGAAGAGTC 58 167219147 167219522 CCAAATGTAGCCTAGAGCG 58 Novel Rattus norvegicus 81 AABR07053681.1 ENSRNOG00000043539 ENSRNOT00000068806 1 1 1 60 3 120143644 120143664 GCCTTGAACTCAGAGATTCAC 59 120143604 120143622 GCACATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000060546 ENSRNOT00000088896 2 1 1 60 X 123394028 123394047 AGATACAGGTCATGCTTCCA 59 123394069 123394088 TGCAGGTCTCATTGTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052625 ENSRNOT00000091949 2 1 1 61 18 27553324 27553346 GATACAGAGAAGATTAGCATGGC 59 27553365 27553385 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052686 ENSRNOT00000084115 2 1 1 60 18 28589986 28590005 AAAGGATGGAGGGACTACTG 59 28589945 28589967 CACAAGGTAAGTAGAAATGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055927 ENSRNOT00000089507 3 1 1 60 18 78919905 78919923 CATTGTGTCAGTAGGTGGC 59 78919947 78919965 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058936 ENSRNOT00000091254 3 1 1 60 18 65612085 65612103 CTGGTCCAAAGGTAGTGAG 57 65612043 65612064 AGGACTTCAATCTGTAACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054451 ENSRNOT00000083095 2 1 1 60 18 25387719 25387738 GAATGTTCATCAGCAGGTGG 59 25387678 25387696 TTCACAGGTCAGGACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057723 ENSRNOT00000089109 1 1 1 60 5 86556454 86556473 GAGTTCTGCTTCTAGAACCC 58 86556413 86556434 TGACACTATTAGGAAATGGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034597 ENSRNOT00000052720 3 1 1 60 18 27673150 27673168 CCCGATCTCGTCTGATCTC 59 27673108 27673128 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055800 ENSRNOT00000082608 1 1 1 61 10 37418984 37419003 CGGAACGATACAGAGATGAC 58 37419027 37419045 CTTCACAAATGCGCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053066 ENSRNOT00000090464 1 1 1 60 15 3210432 3210451 ACGACCTTCCCTGAATAGAG 59 3210391 3210411 AGCATAGCTACTCCTATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057216 ENSRNOT00000086212 1 1 1 60 15 69669619 69669640 CATGCCAAGACTTACTTATTGC 58 69669659 69669679 CCATTAGAGGAAATACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.4 ENSRNOG00000059129 ENSRNOT00000079778 2 1 1 80 18 25313945 25313963 TACTGCAGAACACTGGGTG 60 25313879 25313901 CAATGAGTCCCTGGGAGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058064 ENSRNOT00000083883 3 1 1 60 6 88546647 88546667 CCTAGAGGTATTGCAGTTGTG 59 88546607 88546625 TGCAACCTACTGAGGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061503 ENSRNOT00000088341 3 1 1 60 5 70530936 70530958 TATCCGTTACCTCACTAACTGTC 60 70530898 70530917 AGGAAAGGGATACTTGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053993 ENSRNOT00000089089 3 1 1 61 15 61654804 61654827 GGCTAAGATCAAGTGTAGTATCTG 59 61654845 61654865 TAAAGAGACTCGGCTTTACGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066792.1 ENSRNOG00000054698 ENSRNOT00000091215 2 1 1 80 9 16348874 16349086 AAGACACAGAAGAGGAGGG 58 16348812 16348833 CTTCATAATAGCGCTCTTCCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000061185 ENSRNOT00000089055 1 1 1 75 17 43776280 43776298 TATCAGAAGTCCACCGAGC 59 43776223 43776241 TGAAGTCCTGAGCGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000055553 ENSRNOT00000080370 1 1 1 60 15 57894100 57894118 CTGCATCCACTGATAGACC 57 57894142 57894160 GCATCCTAGTGCAAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056821 ENSRNOT00000089330 3 1 1 60 15 8020714 8020732 TTGTCCATTGCAAGTTGGA 58 8020672 8020690 CAAGTTTCCCACATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000056084 ENSRNOT00000088136 3 1 1 60 5 33176035 33176054 TTCTGTTTACACCCAACAGG 58 33175994 33176012 CACAGGGAGGACATGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Stil ENSRNOG00000057760 ENSRNOT00000081075 2 1 1 80 5 133822713 133823437 CCATTAGTGGGAATCTGGC 58 133823480 133823499 GAACATGTATCTCAAGCAGC 57 Novel Rattus norvegicus 81 SNORD93 ENSRNOG00000047430 ENSRNOT00000063262 2 1 1 60 4 7969292 7969312 GGATGAGGACTCTAACCTGAC 59 7969331 7969352 CCTCAGGTAAATCCTTTAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.2 ENSRNOG00000057563 ENSRNOT00000090911 2 1 1 110 1 92090532 92090550 AAAGTGGCAAATGGGAAGG 59 92090439 92090459 TATGAAGCCCATTCCCACTC 60 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000051403 ENSRNOT00000079856 1 1 1 64 15 36916639 36916657 CAAGTTCTGCTGCTCATGG 59 36916593 36916611 CTGCAGCCAAACTTATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056381 ENSRNOT00000088505 1 1 1 60 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146662 65146681 TCAGAACACTGAGCGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052891 ENSRNOT00000083867 3 1 1 61 20 51862798 51862818 TTGTACTCTGAATTGCTGTCC 58 51862757 51862777 CCACTACCACAAATTATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054752 ENSRNOT00000084786 2 1 1 60 15 26297798 26297817 TTCGGTCAAGGGTATACGAG 59 26297840 26297858 ATGAGAGCTTGTTTGGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058257 ENSRNOT00000080282 2 1 1 60 4 96741190 96741209 AAAGTCTGAAGGCTACTGAG 57 96741149 96741169 CTTGGATTTGTTTGTCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002001.1 ENSRNOG00000058538 ENSRNOT00000078512 1 1 1 80 1 63966825 63966845 ATCAGAAGTTCACCAACTCAC 58 63966885 63967322 TTGATGTCAGAGTAACAAGGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000061239 ENSRNOT00000085239 3 1 1 62 4 115021738 115021756 AGAGATTTAGCTTGGCCCT 58 115021694 115021713 TTAAGCTTGGCAGTAGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0720.1 ENSRNOG00000051130 ENSRNOT00000076668 2 1 1 146 X 71127772 71141623 TGATGAAGAACTCTTCTTCAGC 59 71141729 71141748 ATCCATCCAGTCATTGGAGG 59 Novel Rattus norvegicus 81 AABR07034673.1 ENSRNOG00000059680 ENSRNOT00000084380 1 1 1 84 11 83483453 83483492 TTGATCATCTTCGTGGGCA 59 83483387 83483405 CTTTGGGAGGAGTCCAGTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053645 ENSRNOT00000088434 3 1 1 72 19 27479270 27479288 TCAATTTAGCAGCACACGA 58 27479216 27479235 GATTGCTTGTCACTGTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052166.1 ENSRNOG00000053755 ENSRNOT00000091168 2 1 1 96 3 40477692 40477711 CCATATGGCCAATGGTAGAC 58 40477152 40477555 ATGGGACTTGATGAATGTTGAG 59 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000056025 ENSRNOT00000079278 2 1 1 65 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146657 65146675 ACAGGTCAGAACACTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000053952 ENSRNOT00000087915 1 1 1 60 19 56268639 56268659 GAAGTGTTCTATTGGCCTTCC 59 56268680 56268699 CTAGGCAGCGATACTAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 2 1 1 60 4 157008635 157017339 ATCAAACAAAGAAGCGGAGG 59 157008594 157008612 AGTCAGTGCTCTTAACCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056556.2 ENSRNOG00000061320 ENSRNOT00000009419 1 1 1 60 7 29949304 29949322 TGTGTATGCTCACTTCCCT 58 29949262 29949280 GATTTCAACCAGAGACCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.2 ENSRNOG00000061320 ENSRNOT00000009419 2 1 1 60 7 29949350 29949369 AACATGATCAAGGGTGTGAC 58 29949309 29949327 AGTGAGCATACACAGACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051773 ENSRNOT00000081852 1 1 1 60 19 9716519 9716543 GAATCTGATGTCTTACTTGTAGCTC 60 9716560 9716579 CCCAGTTCTTTCCTCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051638 ENSRNOT00000086406 3 1 1 60 7 38426757 38426775 AGTTGGAATAGGAGCTTGC 58 38426715 38426734 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058749 ENSRNOT00000085480 1 1 1 60 9 73526294 73526312 GTATACGAGTAGCTGCGCT 60 73526252 73526270 AGCTTGCTTTCTTGAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058749 ENSRNOT00000085480 2 1 1 60 9 73526293 73526311 TATACGAGTAGCTGCGCTC 59 73526251 73526270 CAGCTTGCTTTCTTGAGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000080320 2 1 2 93 6 139487216 139487236 CCACTTATTACTGTGCAAGAC 57 139487554 139487572 GAGACAGAAAGGCAGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056818 ENSRNOT00000084820 2 1 1 62 6 117514971 117514991 TGTAAGTCGTAGGTAGCAGAG 59 117515015 117515033 TCCGATGGTCATAGGTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051990 ENSRNOT00000084772 2 1 1 63 4 150515713 150515731 AATGAGGTTTATCCGAGGC 57 150515668 150515686 CCATAGACTGTGGCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060476 ENSRNOT00000081478 2 1 1 60 11 50228808 50228829 GATTGTGTCATATGTGCATCAG 58 50228848 50228868 CAGAACATTGAACCTAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.1 ENSRNOG00000056529 ENSRNOT00000080754 1 1 1 80 4 164170206 164170227 GGAATGGATGTAAACAAACCTG 58 164167188 164170168 GAAGGAACTTCAGTTCATCCTC 59 Novel Rattus norvegicus 81 AABR07062185.1 ENSRNOG00000056529 ENSRNOT00000080754 2 1 1 80 4 164170205 164170226 GAATGGATGTAAACAAACCTGC 59 164167187 164170166 CGAAGGAACTTCAGTTCATCC 59 Novel Rattus norvegicus 81 AABR07061345.1 ENSRNOG00000056962 ENSRNOT00000088557 3 1 1 95 4 117789846 117790305 TTGTGTAGTAGCGGGACTC 59 117789769 117789789 CGCAGATGTGATAAGAAACCA 59 Novel InUTR Rattus norvegicus 81 AABR07033524.1 ENSRNOG00000032213 ENSRNOT00000046693 2 1 1 60 11 25674512 25674532 CAACAAGAAAGACCTGAAGGA 58 25674472 25674490 TGTGCATCTACTCACTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010181.1 ENSRNOG00000055473 ENSRNOT00000091500 1 1 1 80 2 128194987 128195010 CAGAACTTTAGTCTGGGAAAGC 59 128194928 128194952 GATGTATCAGATACAATGGGTAAGC 60 Novel Rattus norvegicus 81 AABR07068636.1 ENSRNOG00000047678 ENSRNOT00000054647 3 1 1 71 9 113746689 113746707 CAGGGCTACAATAGGTGTG 58 113746742 113746760 GTCATGCTTGAGAGTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059076 ENSRNOT00000082832 1 1 1 60 11 56015631 56015651 GATCTGCATTCCCTTCTTCAC 59 56015671 56015691 CTCTTCTACAGCATTGAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051548.2 ENSRNOG00000057376 ENSRNOT00000077741 2 1 1 91 3 16753743 16753967 GGGTATATGGTACCTGTGGG 59 16754016 16754039 CTTGCAGTTTATAGTGACCATCTC 60 Novel Rattus norvegicus 81 AABR07001880.1 ENSRNOG00000060596 ENSRNOT00000015370 2 1 1 71 1 60846713 60846731 ATGATTCCTGGGCACTCAG 60 60846657 60846678 GTTCTTGGCTAGAGTCTTTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058464.1 ENSRNOG00000052981 ENSRNOT00000089076 3 1 1 100 7 118473948 118474537 TTGAGGGAATCAGCTCAGC 60 118473866 118473884 TCAGAGTCAGCTGCATTCC 60 Novel Rattus norvegicus 81 AABR07072668.1 ENSRNOG00000033345 ENSRNOT00000091620 3 1 1 60 19 59991426 59991444 TAAGGAAGACCACTCGCTG 59 59991384 59991403 AGGCTTCACTCTGATCTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059531 ENSRNOT00000077576 3 1 1 62 11 52947370 52947388 CAGAGAAGACTAGCATGGC 58 52947414 52947432 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054645 ENSRNOT00000080789 2 1 1 60 11 49046059 49046080 AAGTTTAGCTATGAACCCTGTG 59 49046101 49046119 TCATTTGAACGCTGTACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD71 ENSRNOG00000059926 ENSRNOT00000082476 2 1 1 60 19 41824890 41824909 ATGAAGCAAGGAGTGATCCA 59 41824849 41824867 CAGCAATGTGAGTTTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054114 ENSRNOT00000082977 2 1 1 60 11 16497646 16497668 GGAACGATACAGAGAAGATTAGC 59 16497688 16497706 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fmr1nb ENSRNOG00000053397 ENSRNOT00000090728 2 1 1 83 X 154645555 154648097 ACTAAGGGATAAGCCTACACAG 59 154645493 154645512 TACACAGGCAGAAATCCCAG 60 Novel Rattus norvegicus 81 SNORA63 ENSRNOG00000052714 ENSRNOT00000077490 1 1 1 60 11 81377002 81377022 GAAGTGTTCTATTGTCGTTCC 57 81376962 81376986 CTAGGCAGAGATAGTAATGTATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000039674 ENSRNOT00000012267 2 1 1 60 11 82813884 82813905 AACCATTCAAGGAAACAGACAG 59 82813923 82813944 CCAATCGTATCTTCATCCTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061617 ENSRNOT00000085685 1 1 1 60 4 86847299 86847320 GGCTATGTCTAAATGTTCAGTG 57 86847260 86847281 TGTTGGGCTACTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000061928 ENSRNOT00000085727 1 1 1 80 8 76816198 76816216 AAGCAGAGGGTATTCTGGG 59 76816260 76821980 CCATTTCGATGGCATCCTG 59 Novel Rattus norvegicus 81 AABR07064231.1 ENSRNOG00000058377 ENSRNOT00000078958 1 1 1 60 6 70276360 70276378 AGTTGAAGAAGAGCCTGGA 58 70276402 70276420 TTCATCACCACGTCATGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063901.1 ENSRNOG00000004108 ENSRNOT00000005458 1 1 1 60 6 55085537 55085555 TCCCATTCTCAGCCTTGAC 59 55085576 55085597 ATGTTCCAGTATGACTCTACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056817.1 ENSRNOG00000056010 ENSRNOT00000086104 1 1 1 80 7 42368827 42368849 AGATTTCACCTCACATGCG 58 42368765 42368784 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000058009 ENSRNOT00000091706 2 1 1 60 11 47049266 47049287 TTCCTTTCCTCATAGGAGTCTG 59 47049308 47049326 ACACTACCAAGGAGGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058468 ENSRNOT00000082118 2 1 1 60 11 40372666 40372684 CTGCTGTGTCACAACTGTC 59 40372624 40372644 GACACTGAGTTTAGACAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058468 ENSRNOT00000082118 3 1 1 60 11 40372664 40372682 GCTGTGTCACAACTGTCAG 59 40372622 40372642 CAGACACTGAGTTTAGACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066096.1 ENSRNOG00000045962 ENSRNOT00000070833 1 1 1 68 9 2135873 2135891 GAAATCCAGCTGTAAGGCA 58 2135823 2135841 ATGGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057077 ENSRNOT00000080359 3 1 1 60 10 70489633 70489651 AGTTGGAATAGGAGCTTGC 58 70489674 70489693 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058239 ENSRNOT00000090829 1 1 1 60 11 10274899 10274917 TATCCTTAGAGGCACTGCA 58 10274857 10274877 CTCTCAGTCACCTAATGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024716.1 ENSRNOG00000057312 ENSRNOT00000077763 3 1 1 90 16 12510996 12511146 CAGACAAGGATGAGAATGATTCTG 60 12511195 12511213 CCTAGCTTAACCACAGCCT 59 Novel Rattus norvegicus 81 AABR07065154.1 ENSRNOG00000036501 ENSRNOT00000054609 2 1 1 61 6 111845949 111845972 CTGTATAAGAACTTCAAGCCTCAG 59 111845911 111845929 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051715.1 ENSRNOG00000047541 ENSRNOT00000072214 3 1 1 86 3 19961698 19961718 CTGTCAGCCTTGATCAAGC 59 19961768 19961786 GGTACCAATGCAAATGGGT 58 Novel Rattus norvegicus 81 AABR07058646.1 ENSRNOG00000050863 ENSRNOT00000072180 3 1 1 62 7 129501150 129501170 GAAATGCTTCCATGAGATCCA 59 129501194 129501212 CCCTTCCTCCCTTGATCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060779 ENSRNOT00000084211 3 1 1 60 7 73298764 73298785 GATACAGAGAAGACTAGCATGG 58 73298804 73298824 GTTGCTTTATGAACCTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111278.1 ENSRNOG00000056688 ENSRNOT00000088211 3 1 1 130 5 64717765 64717783 ACAGTCAGAATTCCACCCA 59 64716498 64717671 AAAGGACCTTTCCCTGGAG 59 Novel Rattus norvegicus 81 AABR07027096.1 ENSRNOG00000060557 ENSRNOT00000081895 3 1 1 82 17 14353466 14353486 ATGATCCAGATGATCCAGGAC 59 14353528 14353553 TAGCTTGGCTCTGATATCTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059325 ENSRNOT00000079105 1 1 1 81 7 135931708 135931726 CTTCTAGAGGCCTTGCAGG 60 135931645 135931663 AGTGTGGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013931.1 ENSRNOG00000051869 ENSRNOT00000079568 1 1 1 60 2 264153633 264153651 TGAAGAAGGAGAGGCAGAG 58 264153591 264153609 ATCTTCCAACCCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054494 ENSRNOT00000083052 1 1 1 60 7 100118547 100118565 GAGAAGATTAGCATGGCCC 58 100118505 100118523 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054494 ENSRNOT00000083052 2 1 1 60 7 100118549 100118571 GATACAGAGAAGATTAGCATGGC 59 100118511 100118529 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000083031 1 1 2 93 6 138535944 138535962 CTCCAAGAGCCAAGTTCTC 58 138535718 138535889 GAGTCCATATCTCACTGTGTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000056776 ENSRNOT00000077641 3 1 1 63 7 53840712 53840731 TCACTTTGACAGCACATGTG 59 53840668 53840686 ATTCTTCGTACAAGGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057675 ENSRNOT00000078911 3 1 1 60 9 23374343 23374362 GTTTACCAGTAGCTGAGCTG 58 23374385 23374403 GGATGAAGATTGCTCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067080.1 ENSRNOG00000057659 ENSRNOT00000085416 3 1 1 98 9 29571898 29571920 GGGATATTGTGGATAACTGTGC 59 29571821 29571839 TACACTCTTCGGAAGTGGC 59 Novel Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076064 3 1 2 63 10 70510226 70510244 TTTCTAGGAGCCCAGTGAG 58 70512262 70512282 AGAAATGATGAATCCTCCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068711.1 ENSRNOG00000048020 ENSRNOT00000054648 3 1 1 61 9 116192195 116192213 CAGGGCTACAATAGGTGTG 58 116192237 116192256 AGAGTGAGGCACTCAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054884 ENSRNOT00000092153 2 1 1 64 4 129529595 129529613 GTTGAGTTCAGTTCAGGGC 59 129529549 129529567 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Krt40 ENSRNOG00000013896 ENSRNOT00000018804 3 1 1 80 10 87457829 87457849 GAGAATTCTAGACTTGCCGTG 59 87457463 87457790 CAGTTCGCTCTCATACTTTGAC 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000047794 ENSRNOT00000074819 3 1 1 60 12 1504038 1504059 ACCAATCTTGTCTGATCTAGGA 59 1503999 1504017 TCCCATCCACGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044574 ENSRNOT00000069841 3 1 1 63 4 11017889 11017907 GATCTCGTCTGATCTCGGA 58 11017844 11017862 TCATAGGCATTGTGTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055502 ENSRNOT00000077600 2 1 1 60 10 59447530 59447554 GGGAGACATTATAATCAAGAAGGTG 60 59447570 59447590 CCAAGGGTCATAGTTAAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043775.1 ENSRNOG00000054540 ENSRNOT00000088671 2 1 1 60 19 39655425 39655445 ACTCATTGACTTACACAGTCC 58 39655385 39655408 CTCAATACTGTTGGAAGTAATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067457.1 ENSRNOG00000032108 ENSRNOT00000051231 1 1 1 60 9 46951617 46951635 GGTGCGAGAAATTGCTCAG 60 46951575 46951593 ATCAGTAGCTGCACTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141966.1 ENSRNOG00000021435 ENSRNOT00000029099 2 1 1 60 9 98601405 98601426 AAGAAAGAGATGCAACTTACCC 59 98601366 98601385 ATACAGGAGAGTGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012843.1 ENSRNOG00000056341 ENSRNOT00000090714 2 1 1 68 2 210338337 210338355 TGTCGGATTACAGCATTGG 58 210338282 210338300 CAGTGCCTACATCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672,ENSRNOT00000079157 1 2 2 80 16 33375065 33375084 GCTCCTCATGGTACTTTCTC 58 33375124 33375147 TGGGATTATCTTTCTGTACCTG 57 Novel Rattus norvegicus 81 Rn60_10_0879.5 ENSRNOG00000051343 ENSRNOT00000076523 2 1 1 87 10 88079778 88084534 ACAAGGTGATGTAGGTCCC 59 88084585 88084603 AGAAAGACTGCTCAGTCCA 58 Novel Rattus norvegicus 81 AABR07042904.1 ENSRNOG00000053115 ENSRNOT00000079257 1 1 1 80 19 14460018 14460036 CTGGACTTAGACCAGAGGA 57 14460078 14465085 AATGAAGCATCCTAGTGAGAG 57 Novel Rattus norvegicus 81 AABR07042904.1 ENSRNOG00000053115 ENSRNOT00000079257 2 1 1 80 19 14460019 14460037 TGGACTTAGACCAGAGGAC 58 14460078 14465086 AAATGAAGCATCCTAGTGAGAG 58 Novel Rattus norvegicus 81 AABR07007134.1 ENSRNOG00000051496 ENSRNOT00000088966 3 1 1 60 1 282557597 282557616 ATTGGAACAGTGGGAATCAG 58 282557638 282557657 TGCAGTAAACAACATCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025689.1 ENSRNOG00000059294 ENSRNOT00000087704 1 1 1 80 16 46028005 46028025 GAGATCACCCTTGGATTTCC 58 46028065 46028086 TTATAGAGCACATACCACAAGG 58 Novel Rattus norvegicus 81 AABR07067387.1 ENSRNOG00000058101 ENSRNOT00000087372 2 1 1 62 9 41995383 41995404 AGACACATACATAACCACAGAC 58 41995342 41995363 GATGTGTCTGTATGTGTATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052405.1 ENSRNOG00000053222 ENSRNOT00000088405 1 1 1 169 3 51890591 51890613 GTCTCTTTGTCTCTGTCTTTCTC 59 51508624 51663638 TGATGACAGAGACAGACAGC 60 Novel Rattus norvegicus 81 AABR07041972.1 ENSRNOG00000058507 ENSRNOT00000088855 1 1 1 60 X 144418160 144418180 CGAAGAAGACTGCATCATCTG 59 144418202 144418220 CACGTCACTGTACCCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073173.1 ENSRNOG00000054734 ENSRNOT00000082841 3 1 1 60 5 152466385 152466404 GGAGAATCTGAAGAGGACCT 58 152467766 152467784 TCTCAGACTCCACCAAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002068.1 ENSRNOG00000045583 ENSRNOT00000075269 2 1 1 80 1 65832447 65832716 GGCATTACCTTCCATCCCT 59 65830806 65830825 TTGATGCAGAGGTGGTATGG 60 Novel Rattus norvegicus 81 AC119007.1 ENSRNOG00000036872 ENSRNOT00000055353 2 1 1 69 7 142941260 142941278 CTCTGTGGGATCCTGTTCC 60 142941311 142941329 GAGCTAGCAGGGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566225 ENSRNOG00000055742 ENSRNOT00000082227 3 1 1 62 X 137197418 137197436 GACCGAAAGTGAACGTCTC 59 137197458 137197480 CCCTCATTTGATTTCTGAAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058192.1 ENSRNOG00000057662 ENSRNOT00000088526 3 1 1 80 7 104197224 104197247 AGATTTCACCTCACATGCGA 60 104197288 104197308 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054116 ENSRNOT00000089813 2 1 1 60 3 156985114 156985133 CTGTGTCACATGTGCATCAG 60 156985155 156985174 CACGAGAGTGTAGACATGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690902 ENSRNOG00000057013 ENSRNOT00000087819 1 1 1 60 X 132424557 132424576 AAAGAAGTATGAAGCCCTGG 58 132424516 132424535 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070238.1 ENSRNOG00000022382 ENSRNOT00000036260 3 1 1 60 8 60618808 60618827 TCTCATCTTGCTCTGCTACC 59 60618951 60618971 GGTGAATATGAAGAGTGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041247.1 ENSRNOG00000030645 ENSRNOT00000041969 3 1 1 60 X 124147550 124147570 AGCATTCATGTTCTTGAGTGG 59 124147590 124147610 CAACAATCTGGTTGGATGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030254.1 ENSRNOG00000052096 ENSRNOT00000079364 2 1 1 96 10 78112875 78173852 CTGTTAGGCCTAGAGTGCT 59 78173912 78173930 GCCAGCAGGTGTAATTCTG 59 Novel InUTR Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000081704 1 1 3 100 20 4873103 4873333 ACAATGAATGGGCTTTGCC 59 4873021 4873039 GTAAGGGAGCAGAAACCCA 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000048483 ENSRNOT00000074952 1 1 1 60 1 262963631 262963649 GATCTCAGAAGCCAAGCAG 58 262963589 262963609 TTCCCAAGTCATCTCCTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071208.2 ENSRNOG00000060605 ENSRNOT00000085081 2 1 1 102 8 104655736 104655756 TCCAAATACAACCTCAGAGGG 60 104655649 104655672 AAGAAGCCTGATCACCATCC 60 Novel Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 3 1 1 72 8 126975981 126976789 TAAGTTCAGCTCGCAGAGG 60 126976824 126976843 CATATGAAGTCTCCCTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060943 ENSRNOT00000079220 2 1 1 63 8 99954042 99954060 CAGTAGATGGCAGTGAGGG 60 99953997 99954015 TCTGATGTTCACAGGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045047.1 ENSRNOG00000053110 ENSRNOT00000079499 1 1 1 60 20 32797865 32797885 TGACATGACACATAGATGCAC 59 32797825 32797843 CTGCTAACCCTCTTCCTCC 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AC108323.3 ENSRNOG00000057487 ENSRNOT00000079725 3 1 1 74 20 11620795 11620814 GTACCAAGTGGCTTACTGTG 59 11620740 11620758 ACAGAAGACTGACAGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025328.1 ENSRNOG00000043076 ENSRNOT00000067642 2 1 1 60 16 33942738 33942756 GCTAAAGGAGACAAAGCCA 58 33942779 33942798 CAGACAACCTTGCAGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026240.1 ENSRNOG00000061711 ENSRNOT00000090682 2 1 1 60 16 69262274 69262292 GGTGTACAGCTTCACATCC 58 69262232 69262250 TTCCTTGGACACTTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044415 ENSRNOT00000069682 2 1 1 60 3 96060118 96060137 ACACAGTCTCAACAGATCTC 57 96060159 96060178 CACATCTAAGCACCAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054424.1 ENSRNOG00000050427 ENSRNOT00000073120 2 1 1 60 3 153231165 153231183 TACTGTGTAACCCAAGCTG 57 153231123 153231142 AAGAGTTAGAGGCTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059849 ENSRNOT00000080107 1 1 1 62 3 74710741 74710763 GGAACGATACAGAGAAGATTAGC 59 74710701 74710721 CACTTCACGAATTTGAGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014690.1 ENSRNOG00000054903 ENSRNOT00000079570 1 1 1 80 14 26654441 26654462 TCAGCTACATGTAGATGATCCT 58 26654500 26655638 CAGTCTGAGGAGATGTATAGGA 58 Novel Rattus norvegicus 81 AC116236.1 ENSRNOG00000059082 ENSRNOT00000088388 1 1 1 80 14 34324338 34324357 CCCATGAGTCAAGCATTACC 59 34324397 34328827 CAGAATTGATTCTTTGTGGAGC 58 Novel Rattus norvegicus 81 AABR07062756.1 ENSRNOG00000054819 ENSRNOT00000086518 2 1 1 121 6 6386505 6390989 AACTCTCCTCAGAGGACCA 59 6391074 6391092 CTCGGTGTGGATTGGAGAG 60 Novel Rattus norvegicus 81 AC097901.1 ENSRNOG00000052984 ENSRNOT00000080737 1 1 1 80 10 44148405 44148427 CCTCTTTGGATTCTCCATATCAG 59 44147876 44148367 TTTCTCATGGAGTCTGTTCCT 59 Novel Rattus norvegicus 81 AABR07000411.1 ENSRNOG00000055789 ENSRNOT00000087070 3 1 1 88 1 12128842 12133905 CCAGTACCTATGACTGTGC 57 12133957 12133975 TACTTCAGAACCACACCCA 58 Novel Rattus norvegicus 81 AABR07060676.1 ENSRNOG00000060884 ENSRNOT00000084146 2 1 1 117 4 89003035 89003059 CTCTGAGACACATTCATATTTCCAG 60 89003133 89003948 TGTTCTCTGTCCTTAGGCAG 59 Novel Rattus norvegicus 81 AABR07047174.3 ENSRNOG00000058791 ENSRNOT00000090341 2 1 1 97 5 22247644 22253450 GGGAGTTTCAGATCCTCCTC 59 22253510 22253528 AATTCCCTGAGGTCCTCCT 60 Novel Rattus norvegicus 81 AABR07029901.1 ENSRNOG00000053970 ENSRNOT00000087110 2 1 1 85 10 58515405 58518425 TACCACAGTATCACTAAAGGTCTG 60 58515343 58515361 ATAACCAGCCAAGAGCTCC 60 Novel Rattus norvegicus 81 AABR07047256.1 ENSRNOG00000059459 ENSRNOT00000079809 1 1 1 80 5 25339602 25340936 CCCAGTACAGCCAAGATCC 60 25340978 25340998 TACTAACTTCTGTCATGCCCA 59 Novel Rattus norvegicus 81 AABR07047389.1 ENSRNOG00000059643 ENSRNOT00000077777 2 1 1 81 5 30720854 30720873 GCTCAACAGTGTCTAAGGGA 60 30685062 30720816 CTAGTTCCATTTAGAGATAACCTGG 59 Novel Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 2 1 1 74 10 78339985 78340603 TAACCAATAGCCCAATGGTG 58 78339930 78339948 GAGTAATGCACTGTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072414.1 ENSRNOG00000054929 ENSRNOT00000084998 1 1 1 60 14 80905146 80905164 AGATGCTCAGCACTGATCC 60 80910808 80910826 GCCTAGTCTCTTTCCACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 3 2 2 118 10 88568176 88568195 CAACATCCAGCTGAACTCTG 59 88567742 88568095 GTATGGAATACCCTGGCCC 60 Novel Rattus norvegicus 81 AC095278.2 ENSRNOG00000061008 ENSRNOT00000089654 2 1 1 93 10 89496882 89496900 GACTAGACTCTCGGGAGCT 60 89496390 89496825 AACATTCGTGAGACCAGGG 60 Novel Rattus norvegicus 81 AC128759.3 ENSRNOG00000052726 ENSRNOT00000086202 3 1 1 60 1 22454804 22454824 GTGTTTACTCTGTGTTCTGGA 58 22453892 22454783 AGAACAAGGTGTGGTGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016558.1 ENSRNOG00000054704 ENSRNOT00000082916 2 1 1 97 14 103713329 103713347 TCTCCTTACGGCTTCAACC 59 103712518 103712536 GTACATTATCGCTGAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000670.1 ENSRNOG00000060376 ENSRNOT00000089045 1 1 1 88 1 22757722 22757742 GGTTCTGAATGAACATTTCGG 58 22757471 22757672 TTGTGTATTTGCTCTCGGG 58 Novel Rattus norvegicus 81 AABR07061448.2 ENSRNOG00000059421 ENSRNOT00000079876 3 1 1 82 4 125192431 125192450 GTCAATTGCAACACCATGAC 58 125192493 125204076 TGTTCTGTGACCACTTATCTC 58 Novel Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 2 1 1 70 5 85124148 85137775 TGATTCTAGCTGAACCGGG 59 85137806 85137827 GGATCACCACTCATCATAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048636.1 ENSRNOG00000054600 ENSRNOT00000083780 3 1 1 82 5 85624319 85624340 TGTCAACTTCATCTTCCTTCTG 58 85596437 85596456 AATTCTCTGGGTTCCATCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048878.1 ENSRNOG00000051725 ENSRNOT00000084081 3 1 1 80 5 95426343 95426361 AGTTCTTGGTTGCACTGGA 60 95279222 95426299 TTTCTTCACTAGGGCAGCC 60 Novel Rattus norvegicus 81 AABR07000723.3 ENSRNOG00000061761 ENSRNOT00000090333 1 1 1 69 1 24610549 24610567 ATGAAGAAGCACCAGTCGT 59 24610001 24610019 CCATCAGCCAATCAGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000723.1 ENSRNOG00000056881 ENSRNOT00000080217 1 1 1 80 1 24737875 24737896 CTAACACAGAGATTCAGCTTCC 59 24737932 24739751 CTGTTTCTAGAACCATAGAAGACC 59 Novel Rattus norvegicus 81 AABR07016586.1 ENSRNOG00000053517 ENSRNOT00000091607 1 1 1 82 14 105353506 105353526 TCCTGATCGGCCTTATATGAC 59 105353570 105358449 GCTTCTGCTCTCCATTCCT 60 Novel Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 3 1 1 89 10 93238146 93238164 AGTGCCTGGGTCTTATGTG 59 93238217 93239917 TTTCCTGTGAGCAACTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048939.1 ENSRNOG00000056861 ENSRNOT00000089682 1 1 1 83 5 98102229 98102247 GTGAAATGCCTGGAAACCG 60 98114130 98114148 TCATGATTCCAAGCCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061652.1 ENSRNOG00000060755 ENSRNOT00000084399 3 1 1 102 4 137966049 137968660 AAATTAGTGGGAAAGGACGC 59 137965966 137965984 TTTGGAGCATGACCTTGTG 58 Novel Rattus norvegicus 81 AABR07016621.1 ENSRNOG00000056139 ENSRNOT00000077722 1 1 1 81 14 107263332 107264530 GGATGCCTACTCAAGATCCC 60 107264573 107264592 CATAGCTGGGTAGAGATGGC 60 Novel Rattus norvegicus 81 AABR07030568.5 ENSRNOG00000056079 ENSRNOT00000080627 3 1 1 84 10 93260403 93262712 CCATGTACAAGAGTAGGATGG 58 93264524 93264543 TCGCCGATATCAATCTTCTC 57 Novel Rattus norvegicus 81 AABR07030568.6 ENSRNOG00000056632 ENSRNOT00000085367 1 1 1 80 10 93273073 93274764 TGTGAAGAACTTCAAAGGAGG 58 93274804 93274824 GATTCCAGTTTGAAACCAGTG 58 Novel Rattus norvegicus 81 AABR07001003.1 ENSRNOG00000053180 ENSRNOT00000081840 1 1 1 80 1 32453941 32475687 GGACACAGGAGATGCAGAG 60 32475731 32475749 GTGAAGGTCGTTGTGAACG 60 Novel Rattus norvegicus 81 AABR07001003.1 ENSRNOG00000053180 ENSRNOT00000081840 3 1 1 85 1 32453944 32475690 CACAGGAGATGCAGAGGAG 60 32475739 32475757 ACAAGATGGTGAAGGTCGT 59 Novel Rattus norvegicus 81 AABR07061899.1 ENSRNOG00000052822 ENSRNOT00000078796 2 1 1 63 4 151887087 151887106 ATTCCTTACAGTGCCACTCC 60 151887043 151887067 GTCTAACAATGAAAGTCTATGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030660.1 ENSRNOG00000053434 ENSRNOT00000080349 3 1 1 83 10 98177883 98188427 AGGAAAGTGTCTCTGATCCC 59 98188470 98188491 TGTAGTTCTTGCTTGCTATCTG 59 Novel Rattus norvegicus 81 AABR07001018.5 ENSRNOG00000058487 ENSRNOT00000082414 1 1 1 80 1 33717913 33720648 TTCTTGATGATGGAGAGTAAGGG 60 33717855 33717873 GATACGCTGACCTAGGCTG 60 Novel Rattus norvegicus 81 AABR07072439.1 ENSRNOG00000057904 ENSRNOT00000083952 2 1 1 84 15 4506499 4509496 AGGAGAAGGTGACTCATCC 58 4509544 4509562 CATTACTGTCCCTCTCCGT 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 3 1 2 78 4 157753916 157754150 GGGTTTCTCAGTAGCCCTG 60 157754192 157754210 ATGTGGGTGGATTGATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 3 1 1 65 5 123663586 123667080 GGTCTTATTATTCCTTGATGGTGG 59 123663544 123663562 ACTCAACCAAGAGCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030832.1 ENSRNOG00000055043 ENSRNOT00000077850 3 1 1 93 10 105426368 105426386 TGATGGAGAAACCTGAGCC 59 105426175 105426312 ACATCGGTGATCTTGGTCAG 60 Novel Rattus norvegicus 81 AABR07030910.1 ENSRNOG00000058129 ENSRNOT00000082454 3 1 1 111 10 108668345 108668366 GGTGCTTCTTGATTATGTCAGG 60 108667854 108668273 GAGGTGCTCACATTCTGTG 59 Novel Rattus norvegicus 81 AC117905.1 ENSRNOG00000061352 ENSRNOT00000081041 2 1 1 80 5 126132200 126132965 AACGGATACATTGGAGATGC 58 126132139 126132158 TGAAGATCGGTGTGAATGGA 59 Novel Rattus norvegicus 81 AABR07017237.2 ENSRNOG00000058267 ENSRNOT00000090141 3 1 1 80 15 19042681 19042700 CCATCAGAAGCTTGGTAGTG 58 19042742 19051606 ATCTCCTGAGAATGCTCCTG 59 Novel Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 3 1 1 60 4 171959401 171960438 TTTAGTGCCACGATTCAGTG 59 171960460 171960479 CACTCTTCCTTTCCAATCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062367.1 ENSRNOG00000055253 ENSRNOT00000088485 1 1 1 85 4 172436458 172436476 AGAGTGGATCAGAGCTGTG 59 172436523 172438185 AAAGCAATTCTGTAGCTGAGG 59 Novel Rattus norvegicus 81 AABR07062404.4 ENSRNOG00000061000 ENSRNOT00000078565 2 1 1 82 4 175178065 175201219 ACATTGTCGAACAGATCCGA 60 175178002 175178020 CTTGGATGCCAGTTCTTGG 59 Novel Rattus norvegicus 81 AABR07049760.2 ENSRNOG00000060378 ENSRNOT00000077862 3 1 1 133 5 136545172 136545190 CTTCTGCTTCTCAGCTGGA 59 136543609 136543627 TCACAGAAGAGGGAAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017846.1 ENSRNOG00000054812 ENSRNOT00000083711 1 1 1 80 15 31812763 31812781 TCATGCAGAAGGACAAGTG 58 31812823 31813065 CATTACATCCAGACAAAGCCA 59 Novel Rattus norvegicus 81 AABR07001594.1 ENSRNOG00000051553 ENSRNOT00000089898 2 1 1 100 1 54062461 54063360 AGGAAGTGGACAAAGAGGAC 59 54063423 54063441 AATCCCTGATGCCACAGAG 60 Novel Rattus norvegicus 81 AABR07001599.1 ENSRNOG00000059913 ENSRNOT00000087624 2 1 1 91 1 54127180 54127198 GGCACAACAGAGTTGTTCC 59 54126662 54127128 CATCCTCTAGTGATCTTCTGGG 60 Novel Rattus norvegicus 81 AABR07063250.2 ENSRNOG00000061045 ENSRNOT00000087766 1 1 1 96 6 24260043 24260061 GACTCTGGAATGCACATCG 59 24264388 24264406 GATGTGGCAGTTTCTGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031989.1 ENSRNOG00000055180 ENSRNOT00000081941 1 1 1 81 18 42069715 42069733 TTCGCCTGATCTCAATGCT 60 42069777 42077588 CAGCAAATAGCAATCTGGCA 59 Novel Rattus norvegicus 81 AC132627.2 ENSRNOG00000058849 ENSRNOT00000081464 1 1 1 60 5 147710164 147710182 AAGACTCACTGGACTCCCT 60 147706478 147706496 ATGACTACGACAGACTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC132627.2 ENSRNOG00000058849 ENSRNOT00000081464 3 1 1 61 5 147710164 147710182 AAGACTCACTGGACTCCCT 60 147706477 147706496 GATGACTACGACAGACTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001699.1 ENSRNOG00000052700 ENSRNOT00000077249 2 1 1 85 1 55356221 55359259 TGGAAGGACTGAGGATCCA 60 55356154 55356174 TTGCACTCTGTTCATTCATGG 59 Novel Rattus norvegicus 81 AABR07063511.2 ENSRNOG00000055114 ENSRNOT00000089260 1 1 1 80 6 32581102 32581903 GAAAGCAATGCCCTTCGTC 60 32581040 32581060 TTCCATATGCACAGAGACTCC 60 Novel Rattus norvegicus 81 AABR07018124.1 ENSRNOG00000051452 ENSRNOT00000077399 1 1 1 80 15 41408953 41408972 CAGAACCCAGAGATAAGGCA 59 41409012 41409728 ATAATAACACCTTCCATGGGCT 60 Novel Rattus norvegicus 81 AC142360.1 ENSRNOG00000055666 ENSRNOT00000090140 1 1 1 87 6 33561110 33561128 CAAGCAACTTCTGCAGTCC 60 33561179 33567604 CATGGGATGGCATTTCTGG 59 Novel Rattus norvegicus 81 AABR07001734.1 ENSRNOG00000054834 ENSRNOT00000089548 3 1 1 80 1 55708171 55708189 TCCTTTAATGCCTCTGGGA 58 55708232 55730680 CTAGTTGTCCAACTTTCCGG 59 Novel Rattus norvegicus 81 AC097890.2 ENSRNOG00000052423 ENSRNOT00000082396 2 1 1 85 18 51367621 51368733 TACTGCCAGAGTGCTTTCTC 60 51367555 51367574 GTCATAGGACAAATGCCAGC 59 Novel Rattus norvegicus 81 AABR07063575.1 ENSRNOG00000061601 ENSRNOT00000086586 1 1 1 69 6 35788228 35788246 CCTCTGAGTCACTCAGCAG 60 35790434 35790455 GACTTGTTCAGCAAGTTTACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC111678.2 ENSRNOG00000057425 ENSRNOT00000077181 1 1 1 80 18 52069544 52069562 ACAGGAGACTGTGAGATCC 58 52069605 52083370 CAACAATTCAGGTCTTCCCA 58 Novel Rattus norvegicus 81 AABR07001942.1 ENSRNOG00000055124 ENSRNOT00000082759 2 1 1 81 1 62532647 62532666 TGGATCTTGCTCAAAGAGGA 59 62507521 62532603 CCACATGCATCCTTAAGCA 58 Novel Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 2 1 1 70 15 50310006 50310024 CAGACAAAGGCAGGATGAG 58 50301627 50309972 CAACATAACAGGGAGGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002010.1 ENSRNOG00000056327 ENSRNOT00000087034 3 1 1 82 1 64830028 64830046 TATGCAGAGTTGTGCTGGA 59 64818706 64829986 CAGAACATCCCTTACTTTACTCC 59 Novel Rattus norvegicus 81 AABR07032261.2 ENSRNOG00000051724 ENSRNOT00000084329 3 1 1 82 18 57572583 57572603 TGGTTTGTTGGTTCATATGGC 60 57553173 57572540 AGGATCATCGAGGGTTTGTG 60 Novel Rattus norvegicus 81 AABR07002066.1 ENSRNOG00000051968 ENSRNOT00000079821 1 1 1 91 1 65652792 65652810 GTTGGTCTCTGGAATTGGC 59 65651461 65652740 GGCAGTTCTCACATCTTTAGAG 59 Novel Rattus norvegicus 81 AABR07032348.2 ENSRNOG00000059170 ENSRNOT00000082212 2 1 1 82 18 62228180 62229870 GAAGAAAGGATCAAATCAGGC 57 62229913 62229932 TCTAGAGTCTCTGCTACAGG 57 Novel Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000084961 3 1 2 90 6 44731304 44731322 GTACAGACTCCCACCATGG 60 44731374 44732611 TCCAGGAGAAAGACCATACAC 59 Novel Rattus norvegicus 81 AABR07032439.1 ENSRNOG00000061537 ENSRNOT00000079627 3 1 1 124 18 65734100 65737140 CACAAGATTGATTCGGATACAC 58 65737225 65737243 ATGTCCATATTCCCGTCCT 58 Novel Rattus norvegicus 81 AABR07018504.1 ENSRNOG00000054268 ENSRNOT00000080169 1 1 1 80 15 62346562 62379363 TGAAGACAAGAATTGGAAGTCG 59 62379401 62379422 TGGGACTGATGAATAAATGCAC 59 Novel Rattus norvegicus 81 AABR07051177.1 ENSRNOG00000058456 ENSRNOT00000084345 2 1 1 80 3 8729 8748 ACTCTTCTGGCAAATCACCT 59 8789 10099 GTCCTCTTGATGCATTATCGC 60 Novel Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 3 1 1 60 15 72057974 72078625 CAGTTATATCAGCCAGTCACAC 59 72078643 72078664 ATATCTGCATTTCCTGGTACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000079226 3 1 2 80 18 68679789 68679810 CAAGGAGAATGGATTCTCATGG 59 68552203 68679748 AGATGTGTCCTCCTTGGTC 59 Novel Rattus norvegicus 81 AABR07032520.3 ENSRNOG00000057598 ENSRNOT00000087490 1 1 1 64 18 69831319 69831337 AGGTCTTCTCGAATGTGCC 60 69830983 69831001 TTCTTATGACAGCGTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019085.1 ENSRNOG00000059113 ENSRNOT00000081466 1 1 1 80 15 87429570 87429589 AGAACTAGCCAATCTCGGTG 60 87428434 87429528 TCCAGCTCGTTACCAATAGG 59 Novel Rattus norvegicus 81 AABR07019116.2 ENSRNOG00000058401 ENSRNOT00000087558 2 1 1 80 15 89807757 89807777 GAAGAATCATGGCATCTCCAG 59 89806956 89807715 CTTTGCTTCTTCCACTGCA 59 Novel Rattus norvegicus 81 AABR07051326.1 ENSRNOG00000055302 ENSRNOT00000088366 2 1 1 80 3 4943558 4943578 GGATATGGGATGTGAAGACAG 58 4943619 4947083 GATTGAAATGAACGGCTGAG 58 Novel Rattus norvegicus 81 AABR07032688.1 ENSRNOG00000061015 ENSRNOT00000081164 3 1 1 62 18 77177442 77177460 CACACTCAGCATTCCTCAG 58 77174829 77177416 TTTCAGTTCCCTTCTGCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07032748.1 ENSRNOG00000057271 ENSRNOT00000078729 2 1 1 80 18 79062984 79063097 CTCACAAGACAGAATGTGGT 58 79063140 79063158 CTTTGAAGCATGTGGAGCA 59 Novel Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000092132 1 1 2 88 1 94028391 94093218 TTAAGACTTGCCTGGGAGC 60 94028321 94028344 AGTCTAGTAAGAATGTGTCCTCAG 60 Novel Rattus norvegicus 81 AABR07071904.2 ENSRNOG00000061879 ENSRNOT00000089191 2 1 1 80 1 94834268 94834286 CTTCAAGTTGGAGCATGGA 58 94834329 94836523 ACATACATGCTCAGATCTGG 57 Novel Rattus norvegicus 81 AABR07033285.1 ENSRNOG00000058475 ENSRNOT00000090964 2 1 1 63 11 15669848 15669867 TAAGAGAAGACACCACCTCC 59 15629596 15629617 CCTTAAGTTCTTCTTTCCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051716.2 ENSRNOG00000060987 ENSRNOT00000083888 1 1 1 81 3 20015193 20015613 GATTCCTGCTTCCACAGGT 60 20015655 20015676 GATAGAGGCTTGATTTCCAAGG 59 Novel Rattus norvegicus 81 AABR07019814.1 ENSRNOG00000055258 ENSRNOT00000088977 1 1 1 88 13 4255766 4261512 GATCTTCTTCCACGAATTGTG 57 4261556 4261580 GGAGAAGAACTCAGTTTATAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064867.2 ENSRNOG00000051551 ENSRNOT00000084980 1 1 1 80 6 98696931 98714074 GTCACTCATCACGGAAATCC 59 98714114 98714135 TGTTCCCAAGTGTTTATGTAGC 59 Novel Rattus norvegicus 81 AABR07064897.1 ENSRNOG00000054542 ENSRNOT00000078197 2 1 1 80 6 99875591 99875893 GTTATGGGCTGAATGAAGGC 59 99875530 99875551 CTGATATTTCTTGTTGCTGTGC 59 Novel Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 1 1 1 85 3 22636574 22637558 ACACGCAGGGATGTTACTC 60 22636507 22636525 AGGCTGTAGAAATCTGGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065049.2 ENSRNOG00000053831 ENSRNOT00000084251 2 1 1 61 6 105833823 105833843 ATCGAAGGATTAGAACCAGCA 59 105823696 105823714 CTCCTCCTGGTGTAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020802.1 ENSRNOG00000061545 ENSRNOT00000078594 3 1 1 80 13 41370727 41370862 CAGATGAGGAGAGCATGTC 57 41370904 41370924 ATTCAATCTTCCACTTAGCCC 58 Novel Rattus norvegicus 81 AABR07020966.1 ENSRNOG00000051872 ENSRNOT00000086053 1 1 1 75 13 48979267 48979285 TACATCAGGTTCCTGGCTC 59 48979932 48979950 TTAGGAGACCGGATTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.2 ENSRNOG00000061785 ENSRNOT00000077712 1 1 1 81 6 110909900 110913921 GAGAAATCTGGTTGAACTACTCAG 59 110909842 110909860 GCAGTCCTCATTGCTTTCC 59 Novel Rattus norvegicus 81 AABR07020990.1 ENSRNOG00000057117 ENSRNOT00000087989 3 1 1 74 13 51336890 51336908 CTCTCATTAGGCAAGCGGT 60 51335771 51335790 ATTCAAGTGTCCGAGTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065261.1 ENSRNOG00000054797 ENSRNOT00000092089 1 1 1 94 6 117645870 117645889 GGTATTGACGTGTCCTTGAC 59 117651867 117651885 CCATCACTAAGCTGTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033850.1 ENSRNOG00000052206 ENSRNOT00000087214 1 1 1 150 11 40444368 40472567 GCTCACAGCCAGAAATTCTG 60 40472677 40472698 TGCAGCTGACGTTATTATTCAG 59 Novel Rattus norvegicus 81 AABR07033850.1 ENSRNOG00000052206 ENSRNOT00000087214 2 1 1 60 11 40444368 40472567 GCTCACAGCCAGAAATTCTG 60 40472588 40472608 TGCTTTCTGTGATATGCTGTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052347.1 ENSRNOG00000059316 ENSRNOT00000085686 3 1 1 87 3 48413340 48413358 CTGAGGGTATACCGCTGTC 59 48411519 48413291 CTTGTATGGATGCACAAGCTC 60 Novel Rattus norvegicus 81 AC113858.2 ENSRNOG00000056496 ENSRNOT00000086817 1 1 1 80 13 68878644 68883017 GGGCTTAGTGTCAGAGGAC 60 68883061 68883079 TTCTATGGCATGGTGGGAG 59 Novel Rattus norvegicus 81 AABR07065298.1 ENSRNOG00000059025 ENSRNOT00000087577 1 1 1 60 6 120103234 120103254 AGTAAACTGCTCAGTTCTGCT 60 120085229 120085247 GGCACTGTGAAGTTGTAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052441.1 ENSRNOG00000052018 ENSRNOT00000092009 3 1 1 82 3 54152870 54220210 GTGATTTGTGCTATGGATTCTG 58 54220252 54220271 GTCTCCATTGGTCTGTAGAG 57 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000084814 2 1 2 80 11 44736556 44736575 GAACTTCAGAGGGACTTCTC 57 44668903 44736514 GAAAGAGCCATTGTTATCGG 57 Novel Rattus norvegicus 81 AABR07065334.1 ENSRNOG00000052245 ENSRNOT00000084335 3 1 1 82 6 121591803 121591822 CTAATGGCATTTGGACCTGC 60 121586123 121591762 TCTATTGTACCTTGTTCCCTCTG 60 Novel Rattus norvegicus 81 AABR07052458.1 ENSRNOG00000058327 ENSRNOT00000092139 3 1 1 85 3 55021849 55021872 CCTTCAAGATATGTGGAATCTTGG 60 55013346 55021807 CCATTGGTACCTTCTTCATGG 59 Novel Rattus norvegicus 81 AABR07034100.1 ENSRNOG00000056538 ENSRNOT00000080184 3 1 1 62 11 52488800 52488821 TGTACAATTACGGATCTTCTGG 58 52470505 52488777 CTGGGAGAAAGAGCCTCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07003713.1 ENSRNOG00000051601 ENSRNOT00000088805 2 1 1 104 1 117799132 117799831 GAGGCCTTGTTACACTGTG 59 117799046 117799066 TCAGTCAGTTCATAGACATGC 58 Novel Rattus norvegicus 81 AABR07021590.1 ENSRNOG00000051371 ENSRNOT00000081991 3 1 1 80 13 79712062 79712081 ATCTGCAAAGTACTCAGAGG 57 79710104 79712019 TTTCTCTTTGCTCAGAGGC 58 Novel Rattus norvegicus 81 AABR07034455.2 ENSRNOG00000057133 ENSRNOT00000088184 3 1 1 80 11 72479522 72479541 GGTTCATGAAGCCTTGACAC 60 72479583 72489144 ACATGGAGAGTCTGACACAG 59 Novel Rattus norvegicus 81 AABR07004033.1 ENSRNOG00000058845 ENSRNOT00000077426 3 1 1 85 1 122881550 122889159 AGAACCCAGGAACCAAGAC 59 122889206 122889226 GTGTGGACACAGATGAATGTG 60 Novel Rattus norvegicus 81 AABR07072876.2 ENSRNOG00000061268 ENSRNOT00000085572 2 1 1 80 3 62279708 62279726 CCTGATTAGCTGCTTGTCG 59 62279769 62282584 TGGTATGAGACTCTGTAGCC 58 Novel Rattus norvegicus 81 AABR07034586.1 ENSRNOG00000053105 ENSRNOT00000079686 3 1 1 81 11 80056620 80057060 TATCCTGAGAGCTTCTCCAG 58 80057104 80057122 TAGCTCATCTGACTCCAGC 59 Novel Rattus norvegicus 81 AABR07052643.1 ENSRNOG00000056573 ENSRNOT00000089225 1 1 1 99 3 67676392 67676411 GAACCGATTTCCAGACAGAG 58 67676473 67683434 AGTCCATGAAACCAAAGCC 58 Novel Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 2 1 1 60 11 83375962 83376984 TTTGTCCTTCTGCTCATCCA 59 83375921 83375939 GGTCTCACATTCTTGGCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052730.2 ENSRNOG00000053273 ENSRNOT00000086513 3 1 1 73 3 71097717 71099270 TATGTTCCAGGTGTTGGTC 57 71097662 71097683 GCTCAATAGAACTGATGAACTG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07072264.3 ENSRNOG00000058902 ENSRNOT00000082278 3 1 1 80 11 86926582 86926601 AGTGACAGGAAGTTGACAGG 60 86926642 86926976 GACAGACGATTTGCTATCTGG 59 Novel Rattus norvegicus 81 AC115369.1 ENSRNOG00000056279 ENSRNOT00000082620 2 1 1 91 13 97920625 97920643 AAGAAACATCTCGGATGGC 58 97920698 97921746 AGTCTTTCTCAGGGACCTC 58 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000083200,ENSRNOT00000081827 3 2 2 71 13 100068876 100068895 AAACATTGACCTTGCTCCAG 59 100071959 100071980 TTCTCAGGGTTTCTACAATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065590.1 ENSRNOG00000061911 ENSRNOT00000087252 2 1 1 89 6 135984149 135984168 GGATGACCTTGAACTGAACC 59 135983760 135984097 CTTTGCAGGGAACACTGTG 59 Novel Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 3 1 1 61 13 104140580 104140598 TTGCAGAAACACAAGACGT 58 104140623 104144803 AATCTTTCGGTCCCAGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022055.1 ENSRNOG00000061655 ENSRNOT00000077089 1 1 1 88 13 104672045 104673253 TTGTGTTAAGTGGCAGCAG 59 104673305 104673323 TGATTCCCGATCCTCTTGC 60 Novel Rattus norvegicus 81 AABR07052897.2 ENSRNOG00000056421 ENSRNOT00000083244 1 1 1 80 3 83146336 83146356 CTGCTAGTCAACTCAAAGGTC 59 83146176 83146294 ACTCCAAGGGTTGTCTTGG 60 Novel Rattus norvegicus 81 AABR07035012.1 ENSRNOG00000061869 ENSRNOT00000088456 3 1 1 256 12 3276231 3279607 GGAGTGATGTCTTAAGAAAGATGTC 60 3279820 3279839 GTAGGACCTTCTTCCTGCAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07035182.1 ENSRNOG00000053835 ENSRNOT00000083822 1 1 1 61 12 6233873 6233891 AGACTCAGTGAGGAGGGAG 60 6233916 6234290 GTGCTGTGCCTTTATGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065818.1 ENSRNOG00000055835 ENSRNOT00000071313 3 1 1 60 6 142757311 142757332 CTTTGTCTTTCTCTTCTTCCTG 57 142757193 142757211 CTGCAGTTGAACTTCGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 1 1 1 60 12 6592747 6602710 CTCTATGGCGATGACCAGG 60 6592705 6592726 GTAGTTCACCTACAGATGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066060.1 ENSRNOG00000055763 ENSRNOT00000086927 2 1 1 89 9 1090436 1115785 TTTAGAAGTTCCTGCCGAGG 60 1115836 1115855 ATCTTCTGCTGTTCAATGCC 59 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000087456 2 1 2 81 16 450871 460660 GTCCTACAGAGAAACAGAAAGG 59 450811 450829 TTCTTTCTTGGTGGTGCTG 58 Novel Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 2 1 1 153 12 9332097 9332589 GTCTCCTCCTTGAACCAGG 59 9332706 9332724 TTAAATACTGCCCACACCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000089547 2 1 2 106 12 10136853 10136871 TACTTCTCAACCACCCAGC 59 10130841 10136783 TCCAAAGCTCCTTCTTGGA 59 Novel Rattus norvegicus 81 AABR07024546.1 ENSRNOG00000053192 ENSRNOT00000086069 2 1 1 80 16 4707599 4723589 GAGGGAGTACAGATACAAGC 57 4707538 4707556 GGAAGAACTCCTTGGATCC 57 Novel Rattus norvegicus 81 AABR07024616.1 ENSRNOG00000061034 ENSRNOT00000082153 2 1 1 111 16 9088169 9088189 ACAGATTCATGCATCGAACTC 59 9088262 9088428 ACAGTTCCAGACCTGAGAG 58 Novel Rattus norvegicus 81 AABR07024648.2 ENSRNOG00000056373 ENSRNOT00000077775 1 1 1 82 16 10107645 10112021 CTTTGAATAGGCATTTGTGGG 58 10112065 10112083 ATCCAACTCAGGTTGTCAG 57 Novel Rattus norvegicus 81 AABR07004495.1 ENSRNOG00000055810 ENSRNOT00000079518 2 1 1 91 1 146347119 146347715 CAAATTACCTAGCTCGCTCAC 59 146347048 146347066 CACCCGGTGAAATGTTGTG 60 Novel Rattus norvegicus 81 AABR07024786.1 ENSRNOG00000059262 ENSRNOT00000084434 3 1 1 80 16 16473053 16473072 CGTATTGTCTCAATGACGGT 58 16455730 16473011 ATGTGCACAAGAATCGACAG 59 Novel Rattus norvegicus 81 AABR07053577.1 ENSRNOG00000052651 ENSRNOT00000083380 3 1 1 61 3 114650699 114650718 TCATCCTCATCCTCTTTGCC 60 114651756 114651774 AAACACTGTCCTCCAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024814.1 ENSRNOG00000056192 ENSRNOT00000077288 2 1 1 64 16 18022525 18022543 ATCACCTAGGAATCAGCCA 58 18021887 18021906 ACCAATGACGTATTCATGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066841.2 ENSRNOG00000060739 ENSRNOT00000083180 1 1 1 80 9 18983759 18984310 TACGATCATTTCCAGGATTTGG 59 18983700 18983720 TTCTGGAGTGAAGTAGAAGGT 58 Novel Rattus norvegicus 81 AABR07024870.1 ENSRNOG00000054077 ENSRNOT00000091624 3 1 1 80 16 20231660 20231678 ATTGTCTCTGCTGCTTCCA 59 20231718 20232004 GAACTCAAGATATCACCCATCAC 59 Novel Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 3 1 1 60 3 125025761 125025779 ATCAGTGCTTACACAGCTG 58 125023193 125025737 TTTGTGTCCTCACTTTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 3 1 1 84 9 20523786 20525041 GGGATCCTTCACATGTGAG 58 20525086 20525107 GTTCTTCATAACCTTTGGATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066875.1 ENSRNOG00000061311 ENSRNOT00000088374 1 1 1 80 9 20728682 20730155 GAAACATCTTAACTTCAGGTACCG 60 20728625 20728644 GCCTTTGGAGAAATCAGCAG 60 Novel Rattus norvegicus 81 AABR07066957.1 ENSRNOG00000054358 ENSRNOT00000079184 3 1 1 112 9 23714391 23714412 GTTTACCTTCTGTGTCTATTGC 58 23714483 23720978 TGCTATGATACCTCCAATGAC 57 Novel Rattus norvegicus 81 AABR07053814.1 ENSRNOG00000059431 ENSRNOT00000088942 2 1 1 89 3 127674598 127674617 ATAATCGTGTTGCTGCTGAG 59 127674669 127677083 GTAGATGAGGAGCTGGGTC 59 Novel Rattus norvegicus 81 AABR07025023.1 ENSRNOG00000055076 ENSRNOT00000082578 3 1 1 83 16 26081428 26098259 GGTAACGACAATGGTGTGC 60 26081363 26081381 GAAGACGAGACCTCCTGTG 60 Novel Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 2 1 1 61 12 22512601 22528104 GAAAGCGACCATGAACTGG 59 22512558 22512579 GATTCTCAACTTCTGTTGACCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 1 1 1 63 12 22601987 22604866 GTGGGTTTCAAGAAGCCAG 59 22604893 22604911 AAACTCACACCTATGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035864.1 ENSRNOG00000052043 ENSRNOT00000078717 2 1 1 83 12 25952324 25965449 TGGAAGAAAGGGTCATTCCA 59 25965495 25965513 GAGGATGCTGAGACCAAGG 60 Novel Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 3 1 1 61 9 29403361 29403380 AGAGGCCATCTTGTAATGGA 59 29403404 29454653 CCCTGTTAGAATGCCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 1 1 1 61 12 33687323 33687344 CCATCCTTTCTAAATTCAAGGC 58 33686613 33687301 GATCAATCACTGGACACCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07005758.1 ENSRNOG00000057349 ENSRNOT00000086583 3 1 1 93 1 196399108 196415135 TATGTCTGAATCAAGGTCTCTG 57 196399036 196399055 TTGCAGCTAGGATTTAACCA 57 Novel Rattus norvegicus 81 AABR07072515.1 ENSRNOG00000061819 ENSRNOT00000084264 1 1 1 60 16 54765147 54765165 CTCCTTCCTGCTTCCTCTC 59 54752475 54765125 GGTCTCTTCCTAGTGACTTGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07067404.2 ENSRNOG00000057258 ENSRNOT00000081049 2 1 1 80 9 43496477 43496736 CCTCTACATCTACTGTGTATCCT 59 43496869 43496890 ACAGTAGATGGAGGGAATACAC 59 Novel Rattus norvegicus 81 AABR07067405.1 ENSRNOG00000055425 ENSRNOT00000089959 1 1 1 80 9 43503762 43503929 TACACAGTAGATATAGAGGATACGC 59 43503963 43503985 TCTACATCTATGGTGTACTCCTC 59 Novel Rattus norvegicus 81 AABR07036084.1 ENSRNOG00000060336 ENSRNOT00000081257 1 1 1 80 12 33922523 33924881 CTGCATTGGTGAATGTCGAG 60 33922462 33922480 GCAGGCAATCAGGAAAGTC 59 Novel Rattus norvegicus 81 AABR07005778.1 ENSRNOG00000059566 ENSRNOT00000091912 1 1 1 80 1 198058981 198060587 GGGAATACTCTGACTCTTGG 57 198060630 198060648 CTGTTGTCTTTAGCCTGGT 57 Novel Rattus norvegicus 81 AABR07054341.2 ENSRNOG00000056754 ENSRNOT00000085752 1 1 1 73 3 148997114 148997132 CTAGATACTGGGATCCGGG 58 148999131 148999149 AAACATCAAGGTCTGCTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 2 1 1 82 12 36812689 36812708 TTTACTGGGCTGATGGATGG 60 36812753 36813670 TACAGGATAGAACGAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005779.5 ENSRNOG00000057003 ENSRNOT00000084011 2 1 1 81 1 198407931 198407950 TCATATGAATCCTATGCCCG 57 198407635 198407888 CTTGGTGAAGAACACATGTC 57 Novel Rattus norvegicus 81 AABR07067507.2 ENSRNOG00000055904 ENSRNOT00000088980 1 1 1 80 9 50193518 50193539 CAACTAACAAGATAGTGTGGGT 58 50190903 50193479 GGTTGAATCTGATGTGACCTG 59 Novel Rattus norvegicus 81 AABR07067507.2 ENSRNOG00000055904 ENSRNOT00000088980 2 1 1 81 9 50193519 50193540 ACAACTAACAAGATAGTGTGGG 58 50190903 50193479 GGTTGAATCTGATGTGACCTG 59 Novel Rattus norvegicus 81 AABR07036411.1 ENSRNOG00000057987 ENSRNOT00000088959 3 1 1 84 12 42388936 42388954 TTTGACCTCAGAGACCACC 59 42387616 42387634 GGTTTCCAATGCTCTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067775.2 ENSRNOG00000058413 ENSRNOT00000078208 1 1 1 80 9 63362277 63364515 CTTATCACTATGAAGTGCACACC 60 63362219 63362238 GATGCTCTGCTTCATGTTCC 59 Novel Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 3 1 1 67 3 160964930 160972965 GAGGCTTGGAAATGGAGAG 58 160972996 160973014 CAGTCAGTGCTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005977.1 ENSRNOG00000052216 ENSRNOT00000084257 2 1 1 96 1 210517470 210517488 CAGCAAAGCCATGGAAAGG 60 210516045 210517412 CTTGATTTCAGGCAACTTCCA 59 Novel Rattus norvegicus 81 AABR07036627.1 ENSRNOG00000059217 ENSRNOT00000078550 1 1 1 80 12 50649862 50651758 GGATACAGGTACTTGGTGAC 57 50651799 50651819 CGAATTCTCAGTGCTATCTCC 58 Novel Rattus norvegicus 81 AC114391.1 ENSRNOG00000052249 ENSRNOT00000080762 1 1 1 80 16 75649836 75649855 CTCAGGGATCTTAAGGTGGG 59 75649898 75663333 AGACAGTTCCTCTCAGCAC 59 Novel Rattus norvegicus 81 AABR07054755.2 ENSRNOG00000060549 ENSRNOT00000080717 1 1 1 80 3 168785841 168787680 AGACCACTGTATAAAGAACACC 58 168785782 168785802 TAAATCTTTGCTCCAGTCCAC 58 Novel Rattus norvegicus 81 AABR07022113.1 ENSRNOG00000053904 ENSRNOT00000083559 3 1 1 81 13 108601145 108601168 GCTCAACTCTAGAGTAATACTCCA 59 108594376 108601106 GTTCAACCTTGCTTGTTCCA 59 Novel Rattus norvegicus 81 AABR07068085.1 ENSRNOG00000055174 ENSRNOT00000088612 1 1 1 80 9 82828687 82828707 AGAAGATTTCTCTTCCCAGTG 57 82826489 82828645 GTTGGTCATAAATGCCTGC 57 Novel Rattus norvegicus 81 AABR07006389.1 ENSRNOG00000058399 ENSRNOT00000086844 1 1 1 80 1 232345410 232345429 GAACAAGGTTCAAGGATGCA 59 232316089 232345370 GTTGTGTAGTTTGTTTCCTGAG 58 Novel Rattus norvegicus 81 AABR07026499.1 ENSRNOG00000058718 ENSRNOT00000084061 3 1 1 80 16 79300003 79300906 GGTAGCTTTGTGTTGTCCT 58 79300950 79300968 GCTGACAGCATCTTCTGTC 59 Novel Rattus norvegicus 81 AABR07037878.2 ENSRNOG00000052694 ENSRNOT00000084241 1 1 1 81 X 34688110 34689281 TCTGGAATTATCCTCCTCTGAG 59 34689320 34689341 TCCACTTTCTGCACTTTAACTC 59 Novel Rattus norvegicus 81 AABR07006436.1 ENSRNOG00000058581 ENSRNOT00000085400 2 1 1 80 1 233669911 233669931 CTACATAAGGACAACAAACGG 57 233668476 233669869 CTCGCCTTTCATGTTTGTG 58 Novel Rattus norvegicus 81 AC096938.1 ENSRNOG00000059836 ENSRNOT00000087316 3 1 1 69 16 82123529 82123547 CACACTAACCAACACGGAG 59 82120946 82120964 GGTACAAGGTGAGGAAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026565.1 ENSRNOG00000056874 ENSRNOT00000090339 2 1 1 80 16 83795319 83798631 TTCCTCCTGCGAGATTATAGAG 59 83795260 83795278 GTCAGGCAACCAAATCACC 60 Novel Rattus norvegicus 81 AABR07026565.2 ENSRNOG00000059439 ENSRNOT00000088632 3 1 1 60 16 83862570 83862588 CCATTAGTAGCTTGCTGCC 59 83862611 83862630 CTGATTCGTTGGGTTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039203.1 ENSRNOG00000053721 ENSRNOT00000092164 3 1 1 124 X 71595922 71596404 GCAGTGAAGAATACATGCCT 58 71600148 71600167 GCCTTCACTGCTTATTTCAC 58 Novel Rattus norvegicus 81 AABR07068285.1 ENSRNOG00000060928 ENSRNOT00000079425 3 1 1 85 9 95795111 95795130 GCATCTTGCTTGATGAAGCT 59 95794702 95795063 CCTCCTTGACGTAAGCCTC 60 Novel Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 1 1 1 73 17 5877370 5877388 GTTCCTACCTGAACGTCCC 60 5877423 5889663 TCTCTGAAGACTGCAGATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026972.1 ENSRNOG00000056679 ENSRNOT00000079209 2 1 1 91 17 7966508 7966526 CTCCTCAGGAACCTCAGAG 59 7966579 7966888 CAGAACCAACTCATTTCCTGG 59 Novel Rattus norvegicus 81 AABR07056442.1 ENSRNOG00000060955 ENSRNOT00000077424 2 1 1 81 7 25763391 25764002 ATTCCAAGGCTGTAGGTGG 59 25763328 25763347 ACGTGCAGGATAGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07026991.1 ENSRNOG00000056027 ENSRNOT00000084252 2 1 1 81 17 8782115 8783341 AGCTCAGCAGAGACAAGTC 59 8783386 8783404 TAGGGTCAGGAGACTCACC 60 Novel Rattus norvegicus 81 AABR07026991.1 ENSRNOG00000056027 ENSRNOT00000084252 3 1 1 82 17 8782117 8783343 CTCAGCAGAGACAAGTCAC 58 8783389 8783407 AGTTAGGGTCAGGAGACTC 57 Novel Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 2 2 2 84 7 26146116 26146449 GAGACTATATTAGGCGTTATTTGCC 60 26146056 26146075 ATACCTTCTGGTGCATTCCA 59 Novel Rattus norvegicus 81 AABR07068712.2 ENSRNOG00000058356 ENSRNOT00000083914 3 1 1 80 9 116290997 116291608 GTAGCAAGAGAACTCTTACTGAC 59 116290939 116290958 CCCAGAAGTCCTAAGAGCAG 60 Novel Rattus norvegicus 81 AABR07027022.1 ENSRNOG00000057452 ENSRNOT00000081011 3 1 1 79 17 11214306 11214325 CAAGTCACTGACTGCATGTG 60 11213965 11213984 TTAACACAGAAGCTGCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027116.1 ENSRNOG00000059028 ENSRNOT00000091406 3 1 1 86 17 14791663 14791682 CTAGCTAGTCCCTCACAGAC 59 14791731 14792267 CTATGCCCTGCTCTTCCTC 60 Novel Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 3 1 1 63 7 34176286 34177890 AGAGGCATCGTCTAACAAGG 60 34177916 34177934 GTTTCTGCCAAGTGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056638.1 ENSRNOG00000057175 ENSRNOT00000079330 1 1 1 93 7 34323195 34323215 GGCTCAACTGAAGAATTTGGA 59 34321987 34323140 CATTTGCGTTTGCCTTTGC 60 Novel Rattus norvegicus 81 AABR07027155.1 ENSRNOG00000057010 ENSRNOT00000078364 3 1 1 80 17 16984319 16997703 AAACCCTGAGTACACGGAG 59 16997747 16997765 TCTCCTTCATGGTTTCGCA 59 Novel Rattus norvegicus 81 AABR07069100.1 ENSRNOG00000061498 ENSRNOT00000089784 1 1 1 92 8 8881724 8881742 AACTGACTGCACTCAACAG 58 8881798 8884424 AAGTGCCAAACCTTGTCTC 58 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 1 1 1 60 17 20636834 20636856 CCTGTGAAGTTACTGATTAGAGG 58 20636876 20668845 AGCTGTGGTCCTTTACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069205.1 ENSRNOG00000054346 ENSRNOT00000091933 1 1 1 80 8 11831659 11837941 GATCTCACCAGGGAAGGAG 59 11831597 11831615 CTCACGTGACTCAGTTCCA 59 Novel Rattus norvegicus 81 AABR07027263.1 ENSRNOG00000051502 ENSRNOT00000081422 3 1 1 89 17 21834944 21863538 TCAGTCTAGCAGATGTTTCGT 59 21863589 21863607 TTACAAAGAAGCGTGCGTG 60 Novel Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 1 1 1 60 8 12794659 12822958 ATCACGGTCATCACAAGCT 59 12794617 12794640 GTTGATACAGAGAATCCAAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027268.1 ENSRNOG00000054163 ENSRNOT00000090770 2 1 1 80 17 22097844 22097863 TTGAGAAGCTCAGAACTTCC 58 22097904 22098745 TAGATGAATGGGTGACAAGTG 58 Novel Rattus norvegicus 81 AABR07043001.1 ENSRNOG00000058624 ENSRNOT00000088372 2 1 1 121 19 16166694 16166712 ATACTTGAGCACTGCAGCA 60 16158350 16166610 AGAGTTGTTTGCCATCACAC 59 Novel Rattus norvegicus 81 AABR07056858.1 ENSRNOG00000054216 ENSRNOT00000085795 1 1 1 89 7 44144930 44144948 AGACACCAAGACACAGACG 60 44142165 44144877 CTTGCCTTCCAATGTCCTG 59 Novel Rattus norvegicus 81 AABR07057116.1 ENSRNOG00000060210 ENSRNOT00000089822 3 1 1 82 7 56242964 56242986 CGACATGTATGCAGTACATAAGG 60 56291800 56291819 CTCTTCCCATCCAACTTCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 3 1 1 73 1 272858846 272859318 GAGCTGAATCATGGAACGA 58 272844207 272844225 TTTGCTGTGCAGTTGTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069490.2 ENSRNOG00000058106 ENSRNOT00000082246 3 1 1 80 8 24108471 24114787 GATCCTAAGTGGAATTCAGGTG 59 24114826 24114846 TTCTGTATTTATGGGAGCTGC 58 Novel Rattus norvegicus 81 AABR07069633.1 ENSRNOG00000061559 ENSRNOT00000079468 2 1 1 84 8 35514714 35536395 CCTAAGAAACTGGTCCCAC 58 35506657 35506678 GGCAATAGATGTGAAGATTCTC 57 Novel Rattus norvegicus 81 AABR07043445.1 ENSRNOG00000061812 ENSRNOT00000085366 2 1 1 83 19 28558415 28558435 CACGGAACCAGAAATATTTGG 58 28558479 28563266 TTCTGAGACCTGATGATGCT 59 Novel Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 1 1 1 60 7 69338622 69339911 AGACAGAAGAGTTGTTTGCA 58 69339933 69339952 AGACTTCTCATGTTGGGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057390.1 ENSRNOG00000051608 ENSRNOT00000080633 2 1 1 80 7 69565510 69565530 CTCACCTGTGGAATTAAGTGG 59 69560156 69565469 CAATGCTGACTTACACCCAG 59 Novel Rattus norvegicus 81 AABR07043615.1 ENSRNOG00000061386 ENSRNOT00000088621 3 1 1 81 19 32109652 32109670 GATGATGCTTCAGTGCTGC 60 32107149 32109608 GCATTCCCTCTTAAAGCTGG 59 Novel Rattus norvegicus 81 AABR07007065.1 ENSRNOG00000061842 ENSRNOT00000081741 2 1 1 82 1 279109575 279110380 ACCATCATCAACAGAAGGC 58 279109511 279109529 CCTCAGGAGACATTTGCAC 59 Novel Rattus norvegicus 81 AABR07043696.1 ENSRNOG00000052825 ENSRNOT00000090201 1 1 1 83 19 36108351 36109403 CATGTGGAATGTGGAAGGC 59 36109450 36109468 TCTCCTCTTCCTTGTTGGC 59 Novel Rattus norvegicus 81 AABR07069987.1 ENSRNOG00000057045 ENSRNOT00000086935 3 1 1 80 8 44367505 44367525 CAGCAAATCTTAATCCCAGTC 57 44366804 44366822 ATTACTCAGAGGAGCCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 1 2 2 80 X 113550887 113550905 CCTGCAAACAACTATGGGT 58 113550949 113581954 CTGAGGAGGTGTCTTTCCA 59 Novel Rattus norvegicus 81 AABR07007584.1 ENSRNOG00000051789 ENSRNOT00000085567 1 1 1 80 2 20350022 20350613 TGGCAATGAGAAATGCTCTG 59 20350656 20350674 GAAGCCTTGAGTTCGTCAC 59 Novel Rattus norvegicus 81 AC119699.2 ENSRNOG00000058480 ENSRNOT00000083520 3 1 1 81 10 16507227 16513536 ACCGCCTGAAATCTATGCA 60 16507164 16507183 TGAGTCGTCCTGTATTCTGC 60 Novel Rattus norvegicus 81 AC119699.3 ENSRNOG00000060453 ENSRNOT00000087147 1 1 1 82 10 16520855 16522736 ACCTGGAAAGGGAGAACTC 59 16522781 16522800 TGTCTTGTTTACACGACGTC 59 Novel Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 2 1 1 60 8 53831988 53832006 AGATCAGTGTTCCATGCCT 59 53832029 53837374 TCTCTGAAGTTGAGAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007715.1 ENSRNOG00000061142 ENSRNOT00000081057 3 1 1 80 2 25331410 25331430 ATATAGCAGCAGATGGGAAGG 60 25331472 25343912 TGTGAGCATCTCAACCGAG 60 Novel Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 1 1 1 60 10 30546879 30555480 TTTAATCTGCAACTGCCAGC 60 30546838 30546859 TGCAATGGTACAGTGTAATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007717.1 ENSRNOG00000056427 ENSRNOT00000084325 1 1 1 81 2 25564979 25564997 GAAACCTGATGCAGACCAC 59 25565473 25565491 CATCAGTCCTCTGAGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC119356.1 ENSRNOG00000058744 ENSRNOT00000086947 2 1 1 80 2 28346848 28348254 GTTGATCTCAGGTTTCAGGA 57 28348296 28348315 AGTCACAGAGATGCATACTG 57 Novel Rattus norvegicus 81 AABR07072106.1 ENSRNOG00000060925 ENSRNOT00000089709 1 1 1 87 10 38053608 38053626 TTAAGGTCAGCCAGGACTC 59 38050170 38053557 TTCTTGATGGCAAGACCTG 58 Novel Rattus norvegicus 81 AABR07007793.1 ENSRNOG00000061197 ENSRNOT00000083741 1 1 1 81 2 28658166 28658184 AACAGTCACTCTCCAGAGC 59 28657581 28658124 CTCTTCCTGCTATAACCTTCGA 60 Novel Rattus norvegicus 81 AABR07058420.1 ENSRNOG00000056933 ENSRNOT00000088860 2 1 1 91 7 115577726 115587962 ACACTCAGGAAGACCACTC 59 115577653 115577671 AGTCTTCTCTGCCAGTGAG 59 Novel Rattus norvegicus 81 AABR07070246.1 ENSRNOG00000060961 ENSRNOT00000091928 3 1 1 93 8 61435412 61435430 GCTTGAGAAGCACTCATGG 59 61433597 61435356 GATACAAGAGGCTCCAGACC 60 Novel Rattus norvegicus 81 AABR07058498.1 ENSRNOG00000055973 ENSRNOT00000083221 2 1 1 94 7 119690093 119690111 CTGGTTACAGACCCTGGTC 59 119696019 119696037 GATCCTGACACTTCCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000085401 3 1 2 91 2 28842892 28842911 TTATGTCGACAGAAAGCTGC 59 28836885 28836905 GCCAATTCTCTTGTAAGTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.1 ENSRNOG00000053800 ENSRNOT00000083165 1 1 1 88 X 155804008 155804026 AAGACATTGCAGGTGTTGC 59 155800249 155803957 GTGAGATAGCTAGTGGTCGA 59 Novel Rattus norvegicus 81 AABR07029634.2 ENSRNOG00000056352 ENSRNOT00000086111 1 1 1 80 10 41833742 41835184 TTCTTTAGGGCACATCTGC 58 41833680 41833698 CCTCACATTCGTTATGGGT 57 Novel Rattus norvegicus 81 AABR07028036.1 ENSRNOG00000056249 ENSRNOT00000078898 2 1 1 96 17 54180929 54180948 AAATATGGAACTGCTGGGTG 58 54178574 54180876 CTAGAAGTATCTGTCAAGTGATGTC 59 Novel Rattus norvegicus 81 AABR07028039.1 ENSRNOG00000058764 ENSRNOT00000090269 2 1 1 87 17 54485323 54485341 CAACATGTCTGAGGGAGCT 59 54485391 54497523 CAAGTTCTCCTGTTCCAGTG 59 Novel Rattus norvegicus 81 AC098763.1 ENSRNOG00000060382 ENSRNOT00000078305 2 1 1 99 20 12944628 12944646 CAACACCAATGAGCGAGAC 59 12942300 12942318 TCTTCTTCCCAGGACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059495.1 ENSRNOG00000058980 ENSRNOT00000077494 2 1 1 109 4 21957008 21957029 CACAGCAGTTTGTTTCATTCTC 59 21957096 21957223 GGATCTTCCATTTCTCTTCTGG 59 Novel Rattus norvegicus 81 AABR07028356.1 ENSRNOG00000056515 ENSRNOT00000084781 1 1 1 80 17 66737935 66738116 GGCACTAATTAAGGCTTCACAG 60 66738155 66738175 GTAGCATTTACATCAGCACCA 59 Novel Rattus norvegicus 81 AABR07044712.1 ENSRNOG00000058621 ENSRNOT00000091408 1 1 1 80 20 18108512 18108530 GATCTTCTGCAAGGCTTCC 59 18095410 18108469 GAAGGAATATGGTCAGCCTG 58 Novel Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 2 1 1 61 20 18248203 18258576 AGGAGATTTCTCAACCGGG 59 18248160 18248181 GCTTCGTTTACGAACTAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070801.2 ENSRNOG00000061652 ENSRNOT00000086475 3 1 1 87 8 84878643 84878743 GCAGCTAAGACTCACAGGT 59 84878794 84878812 TCTTCATTGTGGAGCCAGG 60 Novel Rattus norvegicus 81 AABR07044752.1 ENSRNOG00000055901 ENSRNOT00000089930 1 1 1 62 20 19555186 19555204 CTGATTCCAGAATGGCTGC 59 19554431 19554449 AAACTGGAGGTCAGAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC094253.1 ENSRNOG00000059771 ENSRNOT00000085697 3 1 1 95 4 29027383 29027401 TGACTTATACGGTGCCCTG 59 29027458 29047492 GCAGTCGTTCCTGTATAATGC 60 Novel Rattus norvegicus 81 AABR07044754.1 ENSRNOG00000052144 ENSRNOT00000077693 1 1 1 80 20 19605286 19605304 TCAGCTTTCACAAGAGGGT 59 19605345 19610260 TATTCTGACCTAAAGTTGTCCG 58 Novel Rattus norvegicus 81 AABR07008099.2 ENSRNOG00000058955 ENSRNOT00000077179 1 1 1 115 2 42878782 42878801 TCTTATTTGTCTTCCAGCCC 58 42877541 42878706 GATAACAAGATGAGCACAGGA 58 Novel Rattus norvegicus 81 AABR07070816.2 ENSRNOG00000054728 ENSRNOT00000090962 1 1 1 83 8 85577140 85577380 ATTGTTTGGTTGGAGCATGG 60 85577421 85577444 CCATCTAGGACAATTTCGATTCTG 60 Novel Rattus norvegicus 81 AABR07044804.1 ENSRNOG00000054048 ENSRNOT00000087778 1 1 1 81 20 21191102 21191801 GAGTGCATTAGGGTTACCC 58 21191039 21191058 GGCATAGACAGATGAAAGGA 57 Novel Rattus norvegicus 81 AABR07028535.1 ENSRNOG00000052494 ENSRNOT00000090433 2 1 1 80 17 74010069 74014011 TTGAAGAACAGGAAAGGCTC 58 74014052 74014072 TGGTTAGCTCTAAAGATCCAC 57 Novel Rattus norvegicus 81 AC111653.1 ENSRNOG00000057337 ENSRNOT00000089163 1 1 2 82 2 43406760 43406778 TATGGAGGGAAAGATGGCT 58 43406821 43414090 GCTGTTGTGTTCCTTATTACAG 58 Novel Rattus norvegicus 81 AABR07028765.2 ENSRNOG00000059052 ENSRNOT00000087204 2 1 1 60 17 85196130 85196149 TAAGGACACCAGCTACTCCT 60 85194657 85194675 ATGCTTCAGCCATAGGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC110102.2 ENSRNOG00000058227 ENSRNOT00000089694 1 1 1 80 4 44660402 44663694 GGAGAAAGTCAAGGGTTCAG 58 44660341 44660361 AGGGACACTAGAATTTCTGGA 58 Novel Rattus norvegicus 81 AABR07008256.2 ENSRNOG00000056804 ENSRNOT00000083603 1 1 1 84 2 49799614 49801778 CTCTCAGGGCTCTCAACTG 60 49801824 49801844 CTTACTTTAATCGCTGGCCAG 60 Novel Rattus norvegicus 81 AABR07071332.1 ENSRNOG00000058189 ENSRNOT00000090179 2 1 1 102 8 109773216 109773726 CTCAGGTCTCAGGTTCAGC 60 109773132 109773150 TTTGTGAGATGCTGTCGGT 60 Novel Rattus norvegicus 81 AABR07071383.1 ENSRNOG00000059497 ENSRNOT00000077319 2 1 1 83 8 112830895 112830915 GAAGTTGATTACTGGCATGGG 59 112829969 112830851 GGGTTTCTGTTGCTCTTCTC 59 Novel Rattus norvegicus 81 AABR07008399.1 ENSRNOG00000059278 ENSRNOT00000079629 2 1 1 134 2 56217880 56217898 CCTCATGAGGCTTGTTGTC 59 56196463 56196484 CGTGCTTTGTAATTCTTTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000081763,ENSRNOT00000082061 1 2 2 60 8 114037809 114037833 CAGAGTATTACCAGATTTAGCAGAG 59 114037773 114037793 GAAACCAACAGCCAAGTATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC239813.2 ENSRNOG00000056576 ENSRNOT00000087128 1 1 1 88 Y 182584 182699 TCTGGTTCGGATGCTAGAG 59 182751 182769 GACCAGTGTAGAGGAGTGG 59 Novel Rattus norvegicus 81 AABR07071619.1 ENSRNOG00000058565 ENSRNOT00000081690 1 1 1 80 8 124414810 124415725 ATGCAGCAGTTTGCATCTC 59 124415769 124415787 ACTTCTTCCAGGTTCCTCC 59 Novel Rattus norvegicus 81 AABR07043929.1 ENSRNOG00000057032 ENSRNOT00000086708 2 1 1 61 19 48569146 48572980 CAGAGCAAAGAGCAAAGGT 58 48569103 48569124 CCGTTATAATTGCTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC131521.1 ENSRNOG00000056336 ENSRNOT00000080553 3 1 1 82 2 78824479 78824499 CTCTGAAACCTTTGTCATCCC 59 78822824 78824436 TAAGTAGGTTGAAGCCCAGG 59 Novel Rattus norvegicus 81 AABR07071753.1 ENSRNOG00000060074 ENSRNOT00000083759 1 1 1 65 8 129440015 129440034 GTATCTTGATGGCCTGTGAG 58 129439447 129439465 TTCTGGCCTGTTAACTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008977.1 ENSRNOG00000056592 ENSRNOT00000082096 1 1 1 80 2 82000347 82000365 TGAGTGTACTGCCCTTGTG 60 82000050 82000304 GTCATGTGCCTGATTTCCTG 59 Novel Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 3 1 1 113 8 130967674 130967900 TGGTGCTAGGAACGAACAG 60 130967579 130967602 GTATAGGCTAAGGAAATTCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044123.1 ENSRNOG00000061798 ENSRNOT00000089331 1 1 1 72 19 58907147 58907165 TATCAGAGCTGCCAAGGAC 59 58908116 58908134 TGCCAAGACCTTACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009031.1 ENSRNOG00000061466 ENSRNOT00000081329 3 1 1 82 2 84240425 84240446 GCAGATCAGCAGAATATAGAGC 59 84240006 84240382 CAGACTGAGAAGCTTGTGC 59 Novel Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 1 1 1 71 7 138150141 138150662 ACTCTCCATACACTGCAGG 59 138150088 138150108 TGAAGGTGTAACTTGTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071821.1 ENSRNOG00000053879 ENSRNOT00000088147 3 1 1 86 8 133018972 133018991 TATCATCCTGCCAGAGATGC 60 133007856 133018924 AGAATCTGGTACCTCACAGG 59 Novel Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 1 1 1 60 19 61766133 61766151 TGACCGTCCACATACTCTG 59 61763281 61766112 CCCTTCAAGCTCTTGTTTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC103129.5 ENSRNOG00000058860 ENSRNOT00000084402 3 1 1 81 7 139993192 139993211 TCTCCATCTTCAACTGCAGG 60 139993254 139997042 ATGGATGTGCTTCTTTGCTG 59 Novel Rattus norvegicus 81 AABR07009247.1 ENSRNOG00000051687 ENSRNOT00000080050 3 1 1 80 2 90246030 90251030 CGTCCTACAGAGAAATATGAAGG 59 90245972 90245992 TTTCTTTGCAGGTCGTAATGG 59 Novel Rattus norvegicus 81 AABR07009373.2 ENSRNOG00000055250 ENSRNOT00000091734 3 1 1 82 2 94866749 94866767 ATTAACAGCGGCCAATGAC 59 94819869 94866706 CATTCACTAGACAACATGGCTC 60 Novel Rattus norvegicus 81 AABR07009599.1 ENSRNOG00000051894 ENSRNOT00000084565 3 1 1 91 2 105399947 105400196 TTTGCTTGTTGGGAAATCCT 58 105400248 105400268 CTATACAGATCCAGCTCAGTG 58 Novel Rattus norvegicus 81 AABR07009986.1 ENSRNOG00000055301 ENSRNOT00000091825 2 1 1 84 2 119654861 119657855 AAATCAAGACAAAGCTGGTCTC 59 119657899 119657918 ATAAGCTCCGCAACAAACTG 59 Novel Rattus norvegicus 81 AC116283.1 ENSRNOG00000059157 ENSRNOT00000087200 1 1 1 80 2 123454837 123464467 GGCAAACTGAACCAAAGCA 60 123454775 123454795 TTTCAATGTAGCATGAGCCTC 59 Novel Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 2 1 1 67 2 139942376 139945246 CACAGACATGACCAGGAGG 60 139945276 139945295 TATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010587.1 ENSRNOG00000054842 ENSRNOT00000078574 2 1 1 80 2 141637401 141637421 GACTGACATCACACTAGTGCT 60 141637462 141639969 TTCTTGGCTGTCTTCTCCAG 60 Novel Rattus norvegicus 81 AABR07010710.1 ENSRNOG00000060053 ENSRNOT00000084544 1 1 1 60 2 148568871 148568889 TGGAGCCATCCATCTTCAC 60 148568147 148568849 TGCTAACTGCATCATTTGAGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07011512.1 ENSRNOG00000061049 ENSRNOT00000089194 1 1 1 119 2 162986973 162988715 TTCTTTCGAGATTCCTCCAG 57 162988797 162988815 TGGTAAATGACTTTGCCGA 57 Novel Rattus norvegicus 81 AABR07011545.1 ENSRNOG00000049459 ENSRNOT00000073022 2 1 1 82 2 163341515 163341533 TTCCGAATGGAGTCCTTGG 59 163321986 163341474 CGTCTATAATATTTCCAGGCACAG 60 Novel Rattus norvegicus 81 AABR07011991.1 ENSRNOG00000054279 ENSRNOT00000078292 3 1 1 85 2 180545502 180546558 ACTGCATTGTATGAAGAGACTG 59 180545438 180545456 GTCTCCAGTTTCAACGGTC 59 Novel Rattus norvegicus 81 AABR07012047.1 ENSRNOG00000061118 ENSRNOT00000078941 3 1 1 103 2 183810042 183810743 ACCCGAAGATTCTGGTCTG 59 183809957 183809979 GAACACTGTGGTTCTTTATCTCG 60 Novel Rattus norvegicus 81 AABR07012053.1 ENSRNOG00000053340 ENSRNOT00000083998 2 1 1 82 2 184138881 184144468 GAATCCAAGATGCCGATGG 59 184138817 184138836 AGTAAGAGATCCTGCCACTG 59 Novel Rattus norvegicus 81 AC098750.2 ENSRNOG00000054024 ENSRNOT00000085471 3 1 1 99 2 188597363 188597381 CTAATCAAACACCTGCCCG 59 188596446 188596464 CTCTGTAGGCTTTGTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012640.1 ENSRNOG00000051856 ENSRNOT00000080205 3 1 1 60 2 201019179 201022089 TTGATAAGCTCTTTGCCCAG 58 201022111 201022130 AGCATCCATTCTTCATGAGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07014125.1 ENSRNOG00000054857 ENSRNOT00000081396 3 1 1 80 14 1518056 1519353 CTTTCACTTTCAAGAGACGC 58 1517995 1518013 AAGTGCTTATCTTGAGGGC 58 Novel Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 1 1 1 61 14 3983313 3993508 GTTCCCAATGTGCACTGAC 60 3983270 3983289 TCTGTTTCTTGGCAACTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014205.1 ENSRNOG00000053826 ENSRNOT00000084893 1 1 1 80 14 5495822 5495840 AGCAGATGCCACAATTAGG 58 5495881 5507617 CTTGCTTGTATTCTTTGCACTG 59 Novel Rattus norvegicus 81 AABR07014298.1 ENSRNOG00000061590 ENSRNOT00000084570 2 1 1 80 14 7973226 7973244 GAATCAGAAGCCACTGCAG 59 7973288 7979722 CCGTGAGGAAGACTGATCC 60 Novel Rattus norvegicus 81 AABR07014512.1 ENSRNOG00000057178 ENSRNOT00000086361 1 1 1 80 14 18845158 18845712 TTCTGAGGAATGCTATGATGC 58 18845751 18845772 CTTCTGATTCTGGAGGTTTCTG 59 Novel Rattus norvegicus 81 AABR07012728.1 ENSRNOG00000053048 ENSRNOT00000079741 1 1 1 147 2 204033590 204033608 ATGAAATCAGTTCGGGCCT 59 204033718 204033842 GTTTAGATCAGGGCATGCTG 59 Novel Rattus norvegicus 81 AABR07012762.1 ENSRNOG00000055862 ENSRNOT00000087719 1 1 1 89 2 206753177 206777986 TTCGTTCCTGACACAGGAC 60 206753106 206753124 CTCTGTGTAAACGTTGCCG 60 Novel Rattus norvegicus 81 AABR07013165.1 ENSRNOG00000060844 ENSRNOT00000089739 3 1 1 107 2 225801427 225803005 CCCAAGATCTCTGTGGGTG 60 225801338 225801356 GACAGAGGAGACATGGGAG 59 Novel Rattus norvegicus 81 AABR07013453.1 ENSRNOG00000054662 ENSRNOT00000087460 2 1 1 80 2 237974958 237974979 GGATTCCTCTATGACCCTTCTC 60 237975020 237976389 CCTCAGACAGTTCACCCAG 60 Novel Rattus norvegicus 81 AABR07013550.1 ENSRNOG00000054761 ENSRNOT00000086668 2 1 1 89 2 243344246 243344874 ATCCAAACCACCCTAGTGTG 60 243344176 243344194 AGCTGTAGGCAGACTTGTC 59 Novel Rattus norvegicus 81 AC140765.1 ENSRNOG00000053373 ENSRNOT00000087201 1 1 1 80 2 243798837 243798855 AGAGATGTGTTTGATGCCA 57 243778123 243798793 CTCTTTGTCAGTGCCTCTC 58 Novel Rattus norvegicus 81 AABR07013762.1 ENSRNOG00000057395 ENSRNOT00000082852 1 1 1 80 2 255038547 255038566 GCAACACAGTTCCATTATCC 57 255038606 255076490 TGTTCAGTTTCTGGTCTATCAG 58 Novel Rattus norvegicus 81 AABR07013764.3 ENSRNOG00000061178 ENSRNOT00000090909 3 1 1 82 2 255455526 255455544 CAGTGCACTATTCTGGAGG 58 255455025 255455483 TCTATTCTCCTGAAAGTGACAC 58 Novel Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000014713 1 1 4 80 3 140225452 140225602 GGTTTGTTTCAGGACTTGGA 58 140225645 140225663 CAGACTGCTCAGACTACCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059150 ENSRNOT00000077208 1 1 1 60 17 82845424 82845446 GGAACGATACAGAGAAGATTAGC 59 82845466 82845484 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073536.1 ENSRNOG00000060023 ENSRNOT00000079089 2 1 1 60 X 70570819 70570839 CAGCTTATGTCTGAGACTCTC 58 70570774 70570794 TTCTACATTGCAGAGATCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000059102 ENSRNOT00000082457 3 1 1 60 2 186255458 186255477 TGCTAACCACTGTGATTTCC 58 186255499 186255518 CCCACTACCACAAATTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099294.1 ENSRNOG00000029315 ENSRNOT00000050814 3 1 1 60 1 224929615 224929636 AAGAGATGGACTAAGAAGGTGG 59 224929657 224929675 GGTGGATGGGAATCAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016640.1 ENSRNOG00000037522 ENSRNOT00000056827 2 1 1 160 14 108915925 108915946 AGCATCTTACCTTCATATGCAG 58 108916065 108916086 CGGGCTTTCTCTTTAATATGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002267.1 ENSRNOG00000057132 ENSRNOT00000091621 1 1 1 80 1 70516687 70516705 TCAGCTTCCTGCTAGACAC 59 70516622 70516643 CTGTAGATGAGTGGTTGCAG 58 Novel Rattus norvegicus 81 AABR07002267.1 ENSRNOG00000057132 ENSRNOT00000091621 2 1 1 80 1 70516689 70516707 AGTCAGCTTCCTGCTAGAC 59 70516624 70516644 GTAGATGAGTGGTTGCAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061222 ENSRNOT00000083138 3 1 1 60 4 176412410 176412428 TGTCATGCCATCAATCACC 58 176412452 176412470 CAGGATACCTGCTTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0825.2 ENSRNOG00000051299 ENSRNOT00000076838 3 1 1 60 5 78365924 78365944 AGAAACTCATTCTTCCCATCC 58 78365884 78365902 ACCCATGCAGAACAATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000057134 ENSRNOT00000089316 3 1 1 61 4 19516042 19516063 CAAACCTAAGTTCCCATTAGGT 58 19516085 19516103 TTCCCAACAGGTTAAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056998 ENSRNOT00000082325 3 1 1 60 3 58994604 58994624 AAGACTGTTTCTTGGTCAAGG 59 58994643 58994664 GGTTCGTTCTATCTAACAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 3 1 1 84 7 7291089 7291107 TTGTGATGCAGCTCCTCTC 60 7291159 7291177 GAATGTCAACACAGCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 3 2 2 81 5 77432994 77433015 AGTGCAGGGAACTATATTTGGT 60 77246987 77432956 AATGTATTCCCTCCGTCATACTC 60 Novel Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 2 1 1 60 8 43835781 43835802 CCATTGTCTGGTCTATTCTGAG 58 43835825 43835844 CATGTCTGGAAAGCTCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 1 1 1 137 19 44601339 44601358 CCAAAGCAAATGCTAATCCA 57 44600138 44600159 CTTGTTTACTTGTGTTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 1 1 1 63 6 93357152 93357176 GTACATATCTAGATACATGGGACTG 58 93357198 93357217 AAATGAAGAGTCACGAAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000076305,ENSRNOT00000055658,ENSRNOT00000083678 1 3 3 80 5 164953617 164954139 CCTGGAGAAGAACGATGTG 58 164954180 164954201 TCAAAGACAAACTTCTCCACTG 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060076 ENSRNOT00000083370 2 1 1 61 14 50367820 50367838 AGACAGGACATCGCTTGAG 60 50367863 50367881 GACACCAGATCTGCATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 1 2 3 81 X 73665294 73665312 CCTCCTAACTTTGCCTCTC 57 73664182 73665249 CATCAGAACCTTGTGGTCC 58 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 2 2 3 82 X 73665294 73665312 CCTCCTAACTTTGCCTCTC 57 73659834 73665248 CCATCAGAACCTTGTGGTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058301 ENSRNOT00000082519 2 1 1 60 1 246926823 246926842 ACAAGCTCTCAAGAAAGCTG 59 246926859 246926883 GACAAATATGATGATAGGAAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029866.1 ENSRNOG00000054223 ENSRNOT00000086471 3 1 1 60 10 56685034 56685052 AGGTAATGCAGTTGGTCGA 59 56684992 56685011 TTAACCTGCCAAATCGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004765.1 ENSRNOG00000056160 ENSRNOT00000088468 3 1 1 62 1 155281291 155281312 AAGATCAAGTGTAGAAAGCGTG 59 155281335 155281353 GGAAAGCATGGAGTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059952 ENSRNOT00000091784 3 1 1 60 5 147361846 147361868 GATACAGAGAAGATTAGCATGGC 59 147361888 147361906 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054769 ENSRNOT00000085664 2 1 1 60 10 89562099 89562117 AGTTGGAATAGGAGCTTGC 58 89562057 89562075 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000076090,ENSRNOT00000004278 1 2 2 80 X 72076608 72076627 TCCGTCTGATCTATGACACC 59 72075765 72076567 CTTTGCACAACTTGTACTTGG 58 Novel Rattus norvegicus 81 AABR07068221.1 ENSRNOG00000048180 ENSRNOT00000035085 2 1 1 109 9 91063582 91063604 GTTACTAAAGATGCATGTGGG 57 91063493 91063511 TAGCTTCATACCCAAGCAC 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000058612 ENSRNOT00000087422 1 1 1 60 1 16969943 16969961 ATGCTAGCTTTGGCAACAC 59 16969984 16970003 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 3 1 1 66 8 45701582 45701603 GTCAGAAGTCCTTAATATGCCA 58 45701535 45701553 CTATTGCTCTTTACGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 2 2 4 115 X 73466670 73467007 TTCATGAAGGGTTTGATGGA 57 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 ENSRNOG00000031519 ENSRNOT00000048715 3 1 1 60 17 81558461 81558481 GACAAATTCAATGGCACAGTC 59 81558421 81558439 TGGTCTTCCCGTTGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000076382 2 1 2 80 10 11878989 11879428 CGAATAAGAGAAGATGCAGTGAG 59 11879466 11879486 CCCTCCCTCATAGATGTTAGG 59 Novel Rattus norvegicus 81 AC097791.2 ENSRNOG00000060938 ENSRNOT00000079073 2 1 1 62 7 143212728 143212747 ATGATGCTGTCCAGATCCAG 60 143212772 143212790 CTCTGAGACCTCTGTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 3 1 1 67 13 52266821 52266839 AGATGATGCTGGAAGGAGG 59 52266771 52266789 TCCAGAAGGCAAGATCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 2 2 2 94 8 64825815 64825833 TTCATTCCTGGAGAAGCCC 59 64822301 64825757 TCTTGGAACACATGCTCCA 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 3 3 4 104 1 134884870 134884890 GAGAACCCTTGGGAAATTCTG 59 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000079157 1 1 2 80 16 33374147 33374165 CGCCAGAAACTATGAAAGC 57 33374206 33374581 CTCGTTGAGTATCCAATTTGTG 58 Novel Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 1 1 1 72 20 628726 628746 CTCTGCTATACCACTTCTACC 57 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000086689 3 1 2 127 1 11983191 11984200 CATGTTATTGTGGATGAAGTGC 58 11983085 11983103 TTCACATCCAAAGCAGCAC 59 Novel Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 2 2 2 81 10 67111281 67127725 TCTCTGGAACTTACAGAATGGA 59 67111221 67111239 AGAAGAGCTGGTCTTCTGG 59 Novel Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 2 3 3 80 1 19639621 19639640 TGAGTGAAGTCCCAGATGAC 59 19639396 19639582 CTACTGGAGTGTACCTCATAGAG 59 Novel Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 1 2 3 86 1 19639163 19639280 CATTGATGTATCTGCAACTGC 58 19639097 19639116 TCGTTGATGTTCTGGATGTC 58 Novel Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161 1 1 2 81 10 88568241 88577769 CTGTTCAGAATCATCGAAGCC 60 88568180 88568198 GTTCAGCTGGATGTTGCAG 60 Novel Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 3 1 1 60 5 123667091 123667110 GCAGACGAGTTATTATGCCT 58 123663579 123663598 TTGTTCTCCACCATCAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 3 1 1 60 4 162999618 162999637 TCCTTCTCATTCGGAAATGG 58 162999658 162999678 TGTACAGCTGTTCTTTCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 1 1 1 60 11 11653070 11653089 CTGGATTCTACTGATCCAGC 58 11641725 11641744 GTCTTGTATGATTGGCTCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776 2 1 2 118 5 132691745 132700512 GAATCCAGGCATAAATGTTGTG 58 132706065 132706085 AACTTGGGTCATTCCTTTGAC 59 Novel Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 1 1 1 63 6 32414979 32415003 CTACTTATAAGCTACATAGTGCCAG 59 32359952 32359971 TAAGCAAAGGCAGGAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 2 1 1 60 18 49224671 49224691 GATTCTTAGCCTTATGAGCCC 58 49223940 49223961 GGTGTGAGTATTGTTGAGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002337.1 ENSRNOG00000051384 ENSRNOT00000080825,ENSRNOT00000086416 2 2 2 81 1 71223096 71223117 GATATCCATCCTAGAGCAAGGT 59 71207962 71223054 AGACTCCAATGCTGAACCC 60 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 1 1 1 60 18 64304002 64304021 CAAACCTGTCTCCAGAAGTC 58 64309468 64309489 CTAGCACTTTCTCCATAAAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 1 1 1 64 18 79312133 79312151 GGATGGATGGGTGTCTCAG 60 79311562 79311585 GTCAAATCCTATTCTTGTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 3 1 1 60 3 25350842 25350860 TGGAGAGTTTGACTGTGCT 59 25335841 25335860 TTTGGAACAACTCGTTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 2 1 1 78 11 39618518 39618536 TCAGGCCAACATGAGTGAG 60 39648235 39648259 CATCTTACCATTATCTCCTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 1 1 1 61 11 83801320 83801338 CTCTGGAGCCAAATCATGG 58 83814236 83814254 GTTCCATCTCTGAACTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 2 1 1 61 3 71109803 71109823 GATACATCCACCTCAGTTTCC 58 71108009 71108027 CCGTGGTCTTCAGTAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 3 1 1 60 3 80966035 80966054 GCACCATGGCCATTATTACC 60 80968159 80968177 GTCCACAGACATGTGACGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 1 2 3 80 12 3308127 3308146 AACTCTTCTGGCAAATCACC 59 3308188 3319649 TCCTCTTGATGCATTATCGC 58 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 2 2 2 89 12 22369854 22369875 CTGGCTTTGTGTTCAATAAGGA 59 22369925 22370340 TCTTACCTGCCGGAATGAG 59 Novel Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 3 1 1 62 3 130601350 130601369 TATTTGCCAAAGTGTTTGGG 57 130594878 130594898 GCTTATTCTCATTCTCCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 2 1 1 65 16 64877670 64877688 AGAATGGATGTCAACGCAG 58 64878361 64878380 ACACTCTTCTGAATGCTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 3 1 1 82 7 23251350 23251368 ATAAAGCCACACCTCAAGG 57 23198286 23198308 GGTGAATATAGGTAGTCAATCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 3 1 1 60 17 5877411 5877432 AACACTATCTGTGAGATCTGCA 59 5889672 5889691 TATTCAGACAACGCAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 3 1 1 61 7 34176255 34176273 CTTCCTGCAGGGATATCCT 58 34177880 34177901 CTTCTCAGCTTCCTTGTTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000080819 2 1 2 94 17 19056922 19056940 TTTCATTGTCAACCGGAGC 59 19056997 19057260 TCTTTGTGACTGAGTTTGGC 59 Novel Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 2 1 1 60 7 63270922 63270940 CGAATTGAGCTGGAGTCAG 58 63270880 63270899 ACCGTTACCAATGGATCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 1 1 1 60 19 36173616 36173635 GATCGCCTCCTTTATGTGAC 59 36174951 36174969 GATTTGGCCTGAAGTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 2 2 2 81 10 35049328 35053146 AGACAATGACAGACCTTCCA 59 35049266 35049285 CTCTGTTCTCTAAGCCAGGA 59 Novel Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 1 1 1 113 20 5318625 5318643 CTTGTGTTTCAGGGAGTCC 58 5317911 5317929 CACCTGAGTTCCAGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 1 1 1 60 2 32310181 32310201 TTAGGTCTCACCATCTGTAGC 59 32310420 32310438 AGTTCTGTTCTTCTGCTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 3 1 1 61 17 79978371 79978390 CCACTAGACAACATGGAGAC 58 79964658 79964676 AGCTGCTTACTGATCAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000077252 2 1 2 101 20 41023248 41028734 GAATGTCCAGATCTAACAAGTTGG 60 41023170 41023188 TCCTTGTGCTTCAGAGTGG 60 Novel Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000077252 3 1 2 102 20 41023248 41028732 ATGTCCAGATCTAACAAGTTGG 58 41023167 41023185 TTGTCCTTGTGCTTCAGAG 58 Novel Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 2 1 1 69 7 135124931 135124949 AGCCGCTTTATTACTCTGG 57 135146088 135146107 AGGAATAATTGTGATGCCGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751 3 1 2 92 2 156342268 156348156 CAGTAAACTTTCCATGGAACAG 58 156341582 156341601 GGAAGTTCCGTTATGTTGTG 57 Novel Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009 3 1 2 90 2 204040942 204042849 AGCTCTTCCCACAGAATGG 59 204042903 204042921 ATCTTCTGGACACCATGCA 59 Novel Rattus norvegicus 81 Mt-nd1 ENSRNOG00000030644 ENSRNOT00000047550 2 1 1 60 MT 2755 2775 ATCCTAACACTCCTAATCCCA 58 2797 2815 TCCGTTCTACTAGGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd4 ENSRNOG00000029707 ENSRNOT00000042928 1 1 1 60 MT 10681 10701 CAACTTCCTAATCCTCTCCCT 59 10720 10741 AATGGTGTTGGATCATGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde5a ENSRNOG00000014443 ENSRNOT00000019638 2 1 1 80 2 226956748 226956766 GGCATTGTTCTTCACAACG 58 226956808 226961165 AGCAAGGTCAAGTAATACCTG 58 NA Rattus norvegicus 81 LOC679475 ENSRNOG00000042970 ENSRNOT00000065242 2 1 1 241 2 193100915 193100933 TTTCTTCCTGCTGTAGCCT 59 193083973 193100710 AAGTGATGCTTGGCTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Frmpd4 ENSRNOG00000004118 ENSRNOT00000039796 2 1 1 80 X 28154321 28162919 CCAGCCTTATCCTTCTCCC 59 28162961 28162981 CGTACTTTGACTGGATTGGAC 59 NA Rattus norvegicus 81 AC115371.1 ENSRNOG00000048644 ENSRNOT00000065210 2 1 1 120 15 33610921 33611434 TATTCATCAGGAAGCCGCA 59 33611518 33611536 AGAAGGACGAGGAGATGGA 59 NA Rattus norvegicus 81 Dnlz ENSRNOG00000018791 ENSRNOT00000076487 3 1 1 82 3 3797928 3797946 ACTACCAGCTCGTCTACAC 59 3797679 3797882 GAGTCCCACAGACCTTCAG 59 NA InUTR Rattus norvegicus 81 Hist2h2ab ENSRNOG00000048317 ENSRNOT00000048582 1 1 1 60 2 198359976 198359994 AAGAAGACCCGCATCATCC 60 198360018 198360036 TGAGCTCTTCATCGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000047898 ENSRNOT00000044268 2 1 1 65 2 198381950 198381968 AAGAAGACCCGCATCATCC 60 198381903 198381922 CTTGTTGAGTTCTTCGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910420 ENSRNOG00000048940 ENSRNOT00000072457 3 1 1 60 20 753788 753806 CACTGACAACCATGAGCTG 59 753746 753769 CAATAGGTACATCACCAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fyb ENSRNOG00000013886 ENSRNOT00000018634 1 1 1 80 2 55958821 55958842 ATGTGGGAGAAGAAGTTTACGA 60 55958878 55961501 CACTCATACCTTGACTCATTTCTG 60 NA Rattus norvegicus 81 Slc35g2 ENSRNOG00000015370 ENSRNOT00000020610 2 1 1 120 8 108880764 108880782 CTGGAGGACTGGAACAGAG 59 108855494 108855514 TTCACCATGACTGTATTGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir6314 ENSRNOG00000050085 ENSRNOT00000071550 3 1 1 65 2 211682744 211682763 TATAAGGTCGCAGCCTTCAG 60 211682791 211682809 AACCATTGAGACCACAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gramd2 ENSRNOG00000025979 ENSRNOT00000036798 1 1 1 80 8 64534040 64534643 GATATCAAGGTGGTCATTCCTG 59 64534684 64534702 CAGTCCATTGGGAAGAAGC 59 NA Rattus norvegicus 81 Kcnj15 ENSRNOG00000001656 ENSRNOT00000002259 3 1 1 86 11 35580351 35584100 CTGACCTACAGAGTGGTCC 59 35584150 35584168 CATTGCTGTGCTTCACCAG 60 NA Rattus norvegicus 81 LOC100910954 ENSRNOG00000046657 ENSRNOT00000072449 3 1 1 106 2 49383162 49384087 TACATTAACAGCCAAGTCTGTG 59 49383077 49383095 GTGTGGAATCAACCCACAG 59 NA Rattus norvegicus 81 Igll1 ENSRNOG00000025990 ENSRNOT00000029851 3 1 1 151 11 88388435 88388453 CTTCTGTTGCTGCTGTTGG 60 88388568 88389651 ATCTGGAACAGGAACCTGC 60 NA Rattus norvegicus 81 Gnb1 ENSRNOG00000016638 ENSRNOT00000041789 2 1 1 80 5 172962892 172965545 ACCACAAACAAGGTTCATGC 60 172965586 172965606 CACATAATTCCCAGAAGGAGC 59 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 2 2 2 80 20 5548776 5548997 GCTTTGAGGTAACAACATCG 58 5549038 5549058 GATTCTCAATCCATTTGTCCC 57 NA Rattus norvegicus 81 Hcn1 ENSRNOG00000055382 ENSRNOT00000089218 1 1 1 80 2 50155664 50155683 AAATTCTCAGTCTCTTGCGT 58 50155724 50339472 TCATGTGGAATATCTCTTCCC 57 NA Rattus norvegicus 81 Faim ENSRNOG00000030069 ENSRNOT00000047613 3 1 1 80 8 106816377 106817357 CTTTGAAGATGATGAAAGCCCT 59 106817397 106817416 TCACTTAATGCTACGTCCCA 59 NA Rattus norvegicus 81 Foxl2 ENSRNOG00000017190 ENSRNOT00000023091 1 1 1 60 8 107194751 107194769 CGAGAAGAGGCTCACTCTG 60 107194792 107194811 GTAGAACGGGAACTTAGCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr1f ENSRNOG00000000716 ENSRNOT00000000907 1 1 1 60 11 1982798 1982818 CGGATGATAAAGGAGGAACTG 58 1982758 1982777 TAATGCTCTTCTCACCACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687401 ENSRNOG00000029050 ENSRNOT00000061413 3 1 1 98 5 24725894 24725912 TTGCTCTCCACAAGATGCA 60 24725973 24727110 CGGACTCAAAGTTGTTCCTG 59 NA Rattus norvegicus 81 Tm9sf1 ENSRNOG00000019710 ENSRNOT00000026734 1 1 1 80 15 34319865 34319884 CTCCATGTCGTGGTCTACTC 60 34319550 34319823 CCATGACAATGATGCCAGTG 60 NA Rattus norvegicus 81 Olr1533 ENSRNOG00000054480 ENSRNOT00000046587 1 1 1 60 11 45616404 45616422 TGAACAGGACATTGGTGAC 58 45616362 45616380 TGCAACTCTGGAAGATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcne2 ENSRNOG00000029811 ENSRNOT00000040844 1 1 1 65 11 32440386 32440404 TATCAGCACTCCTGTGAGG 59 32445738 32445757 TCAAGTTGGCTAAAGTGGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir1298 ENSRNOG00000041538 ENSRNOT00000063291 1 1 1 60 X 118190265 118190284 CCAGATGTATCCAAGTACCC 57 118190307 118190325 AGTTCAATCAGTTGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684395 ENSRNOG00000048319 ENSRNOT00000072574 2 1 1 129 8 107107388 107129522 GCTTCCAGGAAAGTCTCTG 58 107129615 107129633 GTTATGGAGGAAAGGCTCC 58 NA Rattus norvegicus 81 Bace2 ENSRNOG00000001953 ENSRNOT00000002679 1 1 1 80 11 37858684 37864563 CACGCACATCTCTGATTCC 59 37864605 37864625 GAGTTTCAGAATTTGTCCAGC 58 NA Rattus norvegicus 81 Mir878 ENSRNOG00000041199 ENSRNOT00000062952 3 1 1 60 X 151283512 151283533 GTGCTTTATCTAGTTGGCTGTC 60 151283473 151283492 TACCCAGTATGGTGTCATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mycs ENSRNOG00000003085 ENSRNOT00000004118 1 1 1 60 X 17824734 17824753 AGTACATCCACACTTTGCAG 58 17824775 17824794 TACAGTTTCTCCCTTTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka2 ENSRNOG00000003949 ENSRNOT00000065678 2 1 1 80 X 36867156 36867177 TTAATCAGAGGCAAAGATGGGA 60 36863687 36867120 CTTATACTCTTCATCCACCTTGTC 59 NA Rattus norvegicus 81 Phka2 ENSRNOG00000003949 ENSRNOT00000065678 3 1 1 80 X 36879041 36880029 TGTATGATGAGGCAGGTGG 59 36878979 36879000 GTTGTACTTGGCATGTAGACTG 59 NA Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000035531 2 1 2 83 1 201979749 201981133 TTGTCAGGAGACTTCTTGTG 58 201979685 201979703 TACTCTGGAGACACCACAG 58 NA InUTR Rattus norvegicus 81 Ripk3 ENSRNOG00000020465 ENSRNOT00000027759 2 1 1 80 15 34474045 34474291 TCTTCTGTCAAGTTATGGCTC 58 34473985 34474005 CACAAATCCTAGGTTCTCCAG 58 NA Rattus norvegicus 81 Lpcat1 ENSRNOG00000017930 ENSRNOT00000024111 3 1 1 80 1 32381477 32381880 GGGAAGAATCACATTTGATGAC 58 32381418 32381438 TGATCAGGGTACAAGTAGTCC 59 NA Rattus norvegicus 81 Olr96 ENSRNOG00000015832 ENSRNOT00000021191 2 1 1 60 1 168489843 168489867 CTATGATAGGGTTGTCTATTGTCCA 60 168489884 168489903 ACATGAACAAAGGGAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033979.1 ENSRNOG00000042474 ENSRNOT00000052182 2 1 1 91 11 46739120 46739138 AACTCCGGCTTCTAGTACC 59 46739191 46739230 TGTGAGAAGCATCATAGAGGT 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 1 2 2 80 2 183529494 183534333 CAACACATATAAGTGTACTCGGC 60 183529436 183529455 GCTTCAAGTTCAAGGTCCAC 60 NA Rattus norvegicus 81 LOC365238 ENSRNOG00000015168 ENSRNOT00000020345 3 1 1 117 1 94781069 94782430 GACTACAGACTCAGGAATTGTG 59 94780973 94780991 CGTATGCCTCCATAGTGCT 59 NA InUTR Rattus norvegicus 81 Rn60_X_0551.5 ENSRNOG00000038267 ENSRNOT00000029387 2 1 1 60 X 54892905 54892924 TGAAGAGGAAGAGAAAGCCC 60 54892864 54892883 GACTTTGCCTTTAGTGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg7 ENSRNOG00000001634 ENSRNOT00000002232 1 1 1 80 11 46848907 46851185 TCTGACAAGCACAAAGAAGG 59 46851225 46851246 CAGGTAACTCCAAAGACAACAG 59 NA Rattus norvegicus 81 Ppapdc1a ENSRNOG00000020424 ENSRNOT00000027681 3 1 1 82 1 202490771 202490790 ACCCTTGGCTGTTATTTGTG 59 202490835 202496046 AGGACACTGCTAAGAAGGC 59 NA Rattus norvegicus 81 Ehd2 ENSRNOG00000011346 ENSRNOT00000017353 1 1 1 169 1 77861218 77862729 CTTTCCTCAACAGGTTTATGTG 58 77855669 77855687 CAAGATGATGAGGTCCACG 58 NA Rattus norvegicus 81 Lect2 ENSRNOG00000012189 ENSRNOT00000016252 1 1 1 80 17 8490568 8490586 CCAGCAGATCTTCCAACGA 60 8490628 8491744 GATGCCTTTGGGTTCTTTGAG 60 NA Rattus norvegicus 81 Rn60_X_0594.2 ENSRNOG00000051340 ENSRNOT00000076621 1 1 1 60 X 58520085 58520105 TAACACATCAGAAGAGTGCCA 60 58520127 58520145 GGTGTCAGGATTGGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd2l2 ENSRNOG00000025489 ENSRNOT00000037690 3 1 1 81 18 27193915 27193935 GACACTTCTCTACCTGATGAC 58 27193978 27195739 GTCCTTCCATGAACTTCCA 57 NA Rattus norvegicus 81 Samd12 ENSRNOG00000043390 ENSRNOT00000064877 2 1 1 118 7 93193369 93279953 ACATGACATAACTGGGCGA 59 93193269 93193287 GAACCTTCAGTTGGAGCAC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567,ENSRNOT00000087709 1 3 3 80 15 43021137 43022133 GAGCGAAGGAAGTACCAGG 60 43022176 43022195 TTTCTGGATTACCTCACGCT 59 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 3 2 2 85 1 79649697 79649716 TGAGGATCTGCAGGAAATGG 60 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 1 2 2 80 17 9552699 9554382 GATCACTTCAGGTTCAATCGG 59 9552639 9552657 CATGGCGATGTAGTCTGTG 58 NA Rattus norvegicus 81 Rn60_X_0232.1 ENSRNOG00000031906 ENSRNOT00000042767 3 1 1 82 X 22775931 22775952 GCTGAAAGTTTGGATGAAACAG 59 22776027 22776045 AAGCATCTCCGTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ttc24 ENSRNOG00000028765 ENSRNOT00000050476 1 1 1 80 2 187431163 187431182 AACATCTTCCATCTGGAGGC 60 187430847 187431123 TAAACAAGGCACTATTGTTGGG 59 NA Rattus norvegicus 81 Olr348 ENSRNOG00000058503 ENSRNOT00000085941 1 1 1 60 1 229890223 229890245 CCTGAATGCTTCCATCTATACTG 59 229890263 229890283 CACATTGGATTCACAGAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr306 ENSRNOG00000047643 ENSRNOT00000044878 3 1 1 60 1 213195128 213195148 TCTTCTTCCTTCTGTGGTCTG 60 213195169 213195188 TCATAGGCCATGACTGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35a4 ENSRNOG00000002908 ENSRNOT00000003878 1 1 1 65 18 29506258 29506276 GATGAAGTCAACAGTGGCG 59 29506993 29507011 GAATCCCTTGAAGAACGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 2 1 1 67 X 57187184 57187653 GGGATCCTAAGAAGATCTCCA 58 57187137 57187156 GTCTATTACATCTTGGCCCA 57 NA DesignNoJunction Rattus norvegicus 81 Zfp664 ENSRNOG00000021705 ENSRNOT00000001338 1 1 1 60 12 37185047 37185066 TCAAAGAGTCCACACTGGAG 59 37185006 37185024 ACTAAAGGCCTTCCCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf7 ENSRNOG00000020024 ENSRNOT00000027125 1 1 1 85 18 30781121 30781139 AACTGGAAGGTAGACGCAC 60 30780677 30781072 TTCCAGCTCAGTTCACCAG 60 NA InUTR Rattus norvegicus 81 Pip5k1b ENSRNOG00000015232 ENSRNOT00000068645 3 1 1 83 1 242233787 242244907 AAATTCAAGCTCTGAAGGCC 59 242233723 242233741 ACAGAATCTCCTGGGAGGT 60 NA Rattus norvegicus 81 Olr180 ENSRNOG00000033813 ENSRNOT00000047978 2 1 1 60 1 169856397 169856419 CCTTTCTCAGATGTTCTTCATCC 59 169856359 169856380 GACCAACAATGTAATGCTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2a1l ENSRNOG00000016703 ENSRNOT00000022380 1 1 1 80 6 12465575 12465593 GATGATGTCAGTGAGCAGG 58 12465633 12468333 CCGGTGAATCTTATCATACTGAC 59 NA Rattus norvegicus 81 Plcl2 ENSRNOG00000013368 ENSRNOT00000018146 3 1 1 80 9 1878097 1878117 GATGAGGTGTTCAAGAATGCC 60 1875741 1878055 AGAAACCACTGCATTCTGC 59 NA Rattus norvegicus 81 Slc25a18 ENSRNOG00000042731 ENSRNOT00000015560 3 1 1 86 4 153349077 153349095 AAGACTCGAATCCAGACCC 59 153349145 153349592 CTGGGTCCAGAGTTTCCTG 60 NA Rattus norvegicus 81 Ndufv2 ENSRNOG00000042503 ENSRNOT00000016965 1 1 1 80 9 113884058 113884082 ATAGAGATACTCCTGAGAATAACCC 59 113883918 113884023 TGACTATTGCCTCTATCCTCTC 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271,ENSRNOT00000035888 1 2 2 80 15 45926332 45927164 GCTATCAAGGCTGGATGGA 59 45926270 45926288 AGTCGTAAGTCCTTCTGCC 59 NA Rattus norvegicus 81 RGD1563159 ENSRNOG00000042727 ENSRNOT00000064799 2 1 1 80 18 30801816 30801963 CAACTACTTTAAGGTGCCGAG 59 30801756 30801774 GTATGATACAGCTGCGTGC 59 NA Rattus norvegicus 81 Rn60_17_0453.2 ENSRNOG00000060574 ENSRNOT00000077821 2 1 1 80 17 45211092 45211110 ATTCACAGGAAGGCAAGGT 59 45211149 45211320 GATATGTTTGTCTCCTGGTAACAG 59 NA Rattus norvegicus 81 Tff1 ENSRNOG00000001164 ENSRNOT00000001538 3 1 1 149 20 9893543 9895889 AACCAGGAAGAAACATGTGC 59 9893413 9893431 CTCAATGACCAGAGGTCGG 60 NA Rattus norvegicus 81 Dscam ENSRNOG00000027992 ENSRNOT00000002215 2 1 1 80 11 37062343 37064127 GGATGAAGGATAGTAACGGGA 59 37062283 37062302 TAACGAAACTCCCATTGCTG 59 NA Rattus norvegicus 81 Vav1 ENSRNOG00000050430 ENSRNOT00000073294 3 1 1 80 9 9646457 9646475 GAGAAATTCGGCCTCAAGC 59 9645937 9646416 GTAGATGACCTTTCCAAAGTCC 59 NA Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000045994 3 1 2 80 1 66959800 66959821 ACCAGATTATAGAGCACCTGAC 60 66959860 66969436 CCAAATCTGACAGAGTCTGTG 59 NA Rattus norvegicus 81 Farsb ENSRNOG00000014119 ENSRNOT00000019685 2 1 1 80 9 84361724 84361995 GTTGGAATCAAAGAGACTCCTG 59 84361665 84361684 GCCATCACCTATGACTTCTG 58 NA Rattus norvegicus 81 Tap2 ENSRNOG00000046031 ENSRNOT00000074261 3 1 1 83 20 5208904 5210762 ATTCTCTGTTGGGAGCTCC 59 5208839 5208857 CGTATGCGAAGGTTGATCC 59 NA Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000075883 1 1 2 84 7 115979241 115979261 CAGAATCCAAGGAAGAAAGCT 58 115978563 115979196 GTGTTACAGCTGTCTACCTG 58 NA Rattus norvegicus 81 Opn3 ENSRNOG00000003778 ENSRNOT00000005072 1 1 1 80 13 93719599 93746550 CCTCTTTGGGTTTGTTTCCA 59 93719538 93719556 ATCACTCTGGCATGTACCA 58 NA Rattus norvegicus 81 Rn60_X_0612.1 ENSRNOG00000051281 ENSRNOT00000076333 2 1 1 60 X 61216246 61216265 TAGCCTCTGTTTCTGACCAC 60 61216205 61216223 GAAGCCTCAGCATACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aox1 ENSRNOG00000015354 ENSRNOT00000068633 3 1 1 80 9 64957295 64958258 CTTTCTGTAGAGCTTCTGGT 57 64958300 64958319 CTGCCGATCCATTTATTCCT 58 NA Rattus norvegicus 81 Mageb18 ENSRNOG00000038230 ENSRNOT00000039605 1 1 1 165 X 61231638 61232010 GTTTGTCAAGGGTGACCTC 58 61231491 61231509 GAAAGGACTTGGAGAGGCT 59 NA InUTR Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 3 2 2 80 8 94900403 94904679 CAGAAACAGGTGTTTCTTATGG 58 94900344 94900363 GAGAATGAGCTACGTGATGG 58 NA Rattus norvegicus 81 Dagla ENSRNOG00000027264 ENSRNOT00000037624 2 1 1 80 1 226302868 226302888 AATGAGGTGATCATCTCACCA 59 226302332 226302826 CTCCAGCACCTTATTGAGC 58 NA Rattus norvegicus 81 LOC100361811 ENSRNOG00000032803 ENSRNOT00000047936 3 1 1 60 X 10430914 10430937 GTACTCGGTATATGTTCTCTAGAC 58 10430956 10430974 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911800 ENSRNOG00000045908 ENSRNOT00000065330 2 1 1 175 20 5283090 5283200 TCACTGGGAAATGCAGGAG 60 5282933 5282952 CCTCCACAGTTACTCACAGG 60 NA InUTR Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 3 2 2 80 6 22006612 22006632 TTGGATCAGTTCTGTTGAAGG 58 22002625 22006570 ACCAATAGACAGACCCACC 59 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608,ENSRNOT00000088327 3 2 2 82 2 188234194 188234212 CCTCAGTCTCTGTCATGCT 59 188232634 188234150 TTACCCAAAGATGAGCATCTG 58 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000054334 ENSRNOT00000091756 3 1 1 83 11 60056878 60060381 CTTTATCAGGTTTGACTACTCTGG 59 60060422 60060441 ACATCCTTTCTCCACTTCCC 60 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 1 2 2 80 17 9998062 9998081 AAGCACATCGTTATCAACGG 59 9997873 9998022 ATTGATGTCTGTTGTCTTCAGG 59 NA Rattus norvegicus 81 Olr132 ENSRNOG00000029051 ENSRNOT00000050248 1 1 1 60 1 169074683 169074704 CGGATCTTGGAGTAACATTGAC 59 169074723 169074743 TGATTTAACCACAGTACACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0565.1 ENSRNOG00000042697 ENSRNOT00000058379 1 1 1 60 6 47724236 47724255 AAGGTTGCTATTGACATGGG 58 47724277 47724296 TCTCATTCTGGTACACTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565368 ENSRNOG00000050630 ENSRNOT00000047820 3 1 1 60 8 45561540 45561560 CCTTCTCTTGTGACAAAGTGG 59 45561579 45561600 TAGTTGAGGTCAATGAATGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311847 ENSRNOG00000023700 ENSRNOT00000030617 2 1 1 80 16 19092035 19093266 GAAAGGTGTTCTTGGATCTGAC 59 19091976 19091995 TCGACTTTAAGCTGGACTGG 60 NA Rattus norvegicus 81 LOC100361694 ENSRNOG00000005203 ENSRNOT00000006906 1 1 1 80 14 99774749 99777540 ATAACATTATTGTGGGTGGCTG 59 99774690 99774710 TTACTTCATGAGCTTGTCACC 58 NA InUTR Rattus norvegicus 81 Olr750 ENSRNOG00000004920 ENSRNOT00000006522 3 1 1 60 3 102483702 102483720 GGTGGACAAATTCCTTGCT 58 102483660 102483679 AATGGCTGGATTCAGGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k15 ENSRNOG00000025290 ENSRNOT00000043666 3 1 1 80 X 37651720 37651739 GATGCTGAACAATGGAGTGG 59 37649721 37651682 TGGTCATACTCATACTCTAAGGTG 59 NA Rattus norvegicus 81 Cib3 ENSRNOG00000014600 ENSRNOT00000019578 2 1 1 80 16 19326382 19329864 CGGAGCTAAAGGATAACCC 57 19329907 19329926 TCTCTAAGGTCATGTGACCA 58 NA Rattus norvegicus 81 LOC100362774 ENSRNOG00000042486 ENSRNOT00000050818 3 1 1 129 3 146035893 146035936 ATTACTTAGGGTACAGTGCAC 58 146035784 146035803 TCATTGTGGGCTCTATTGTC 58 NA Rattus norvegicus 81 Rpl24 ENSRNOG00000001611 ENSRNOT00000002194 2 1 1 99 11 47121545 47121563 AATGTGAGTCCGCATTCCT 59 47118808 47121484 TGAATTTCTTCCGACTGTCCT 60 NA Rattus norvegicus 81 Ppme1 ENSRNOG00000017227 ENSRNOT00000023648 3 1 1 81 1 165346878 165346899 AGGAGGAAGAAGATGAAGAAGG 59 165343875 165346838 GGATGATCCTTCTTGGTTTCC 59 NA Rattus norvegicus 81 N4bp1 ENSRNOG00000015121 ENSRNOT00000049285 3 1 1 80 19 21258497 21258521 GGAATATTATCTTTAACTCCTGCCC 60 21258559 21261273 TAAGTGCAGGAGGAACCTG 59 NA Rattus norvegicus 81 Knop1 ENSRNOG00000046147 ENSRNOT00000073003 2 1 1 81 1 188564784 188566960 CTGCATAGATCAGGTGAGAC 58 188564722 188564741 TTTGGGTTCTGAAACCTCTG 58 NA Rattus norvegicus 81 Cidec ENSRNOG00000009153 ENSRNOT00000091965,ENSRNOT00000012136 2 2 2 81 4 145383707 145383727 AAGCCCTACCAAGAGATACAG 59 145383563 145383664 TTCTTCTTGCGCTGTTCTG 59 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000064511 1 1 2 80 1 201906208 201906227 TCTACTGACAGGAGTTGTGC 60 201905319 201906167 GAACAGAGTTGATCGTCTCCA 60 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 3 2 2 80 10 18084110 18084785 AGGTCAAAGGGTCAAGAGTC 59 18084049 18084070 AATGTCTTCTACAGAGCTAGGT 59 NA Rattus norvegicus 81 Jade3 ENSRNOG00000039837 ENSRNOT00000061140 2 1 1 81 X 1929471 1929490 CTAAATGGGCTCATGTCAGC 59 1915409 1920899 GTAACAGGTTTCCTTGATGATGG 60 NA Rattus norvegicus 81 aicda ENSRNOG00000015478 ENSRNOT00000020762 1 1 1 80 4 155359946 155359965 AGCTCCCTTTGACCTAAGAC 59 155360007 155365960 TTTGCTTCATCAAGAGGCTG 59 NA InUTR Rattus norvegicus 81 Xdh ENSRNOG00000007081 ENSRNOT00000009634 3 1 1 80 6 25196248 25200170 TGCATCCTGTACAGGAGAG 59 25196186 25196206 ACATACTCATGACAATGCCAG 59 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 1 2 2 84 1 71253363 71253385 GTGATCTCATTACTGGAACAAGG 59 71253429 71260666 CATACTCCCAATCAGGGCA 59 NA Rattus norvegicus 81 B9d2 ENSRNOG00000028753 ENSRNOT00000028029 3 1 1 62 1 82476563 82476581 CATTGACCTGCACTTTGCT 59 82479123 82479141 CACACCTGGAGATGAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Siah2 ENSRNOG00000013703 ENSRNOT00000018488 3 1 1 80 2 148875514 148891253 TTCCCTGTAAGTATGCCACC 60 148875453 148875474 ATTCACAGATGTCTTCATGCTC 59 NA Rattus norvegicus 81 Olr727 ENSRNOG00000060319 ENSRNOT00000048921 1 1 1 60 3 78862656 78862675 GCACTGACACTCATACTCTG 58 78862696 78862716 AGTAAACACATTGACCCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911295 ENSRNOG00000050978 ENSRNOT00000075762 2 1 1 98 11 36477178 36479426 CGGGAAAGGATAAAGCATCAG 59 36477100 36477120 GATCTGTAGTTTGCTGGTCAG 59 NA Rattus norvegicus 81 Kifc1 ENSRNOG00000000479 ENSRNOT00000065349 2 1 1 84 20 5520114 5520132 GTCTTCGGGAAACACAAGC 60 5520180 5520296 ACGTGGGACTCCTTATTGC 60 NA Rattus norvegicus 81 LOC679565 ENSRNOG00000022709 ENSRNOT00000029408 3 1 1 60 5 847345 847366 TCACCAAGATACAAACGAAGAC 59 847306 847326 ACTTGTCAGATGATGTACTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4b ENSRNOG00000025167 ENSRNOT00000030914 3 1 1 80 1 142012095 142012114 ATGGATCCGGATATTGAGGG 59 142012158 142012705 TTACCTGGCTTAAAGGACCG 60 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000092083,ENSRNOT00000022203 2 2 2 80 17 15856623 15856641 TACCGAGCACTGTACATCC 59 15856684 15857700 TCTGCAATCTGAGTTGTGAG 58 NA Rattus norvegicus 81 Olr733 ENSRNOG00000056633 ENSRNOT00000087245 1 1 1 60 3 78973873 78973894 ATTGTTCTTTGGTCCATGTGTC 60 78973834 78973853 GTCTACAGGCAGGGTATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615,ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386,ENSRNOT00000080470,ENSRNOT00000084756,ENSRNOT00000068415,ENSRNOT00000014962,ENSRNOT00000074002 3 10 10 80 2 231355502 231355948 TGCAATCCAAGATGATGGT 57 231351440 231351458 TTACATTCCCGTAGTGTGC 58 NA Rattus norvegicus 81 LOC100910111 ENSRNOG00000047953 ENSRNOT00000075359 2 1 1 60 2 35298942 35298963 TTGTGGTCTTTGTTCTAGTTGG 59 35298984 35299002 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 3 2 2 83 11 57489212 57492715 CTTTATCAGGTTTGACTACTCTGG 59 57492756 57492775 ACATCCTTTCTCCACTTCCC 60 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 2 2 2 82 18 33413700 33413719 CAGACAAGTTACAGCATCGA 58 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Irf1 ENSRNOG00000008144 ENSRNOT00000010968 2 1 1 81 10 39110784 39112150 CTGAGCTGGATCAATAAAGAAGAG 59 39112190 39112208 CCTTGTTGATGTCCCAACC 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 1 2 2 80 17 16260954 16260973 AGAATGACGTGGAAAGACTG 58 16261014 16261391 GTTTGCTGTTCTTGTACTTCC 58 NA Rattus norvegicus 81 Olr1192 ENSRNOG00000033025 ENSRNOT00000044249 1 1 1 60 8 21341195 21341214 TCATCTCTACAACGATCCCT 58 21341154 21341172 GTGATGGACTTGCTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcmt1 ENSRNOG00000014565 ENSRNOT00000019640 2 1 1 80 1 193369675 193376875 TGAATACACAGTTGCCCAC 58 193376919 193376937 TTAGGAGGTTGGCTGACTG 59 NA Rattus norvegicus 81 Fam131b ENSRNOG00000017149 ENSRNOT00000059447 1 1 1 80 4 71707399 71707418 GTGTCAATTCTACCCAGGAG 58 71707162 71707357 CTAGTGCATCCTGACTTTCC 58 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 1 2 2 117 2 188657364 188657382 TTCGAGTTCTTGCCTGGAG 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 Gimap9 ENSRNOG00000024569 ENSRNOT00000032802 1 1 1 80 4 78310418 78311572 TCCTGCAGAAGATATTCAGGT 59 78311613 78311632 TCCCTACCAGAATGATCCTC 58 NA InUTR Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 3 2 2 80 1 164869917 164873140 GCCTCTAGATGTCTTTCACAC 59 164873179 164873200 TTCACATAGACCATCTTGATGC 59 NA Rattus norvegicus 81 Rps27 ENSRNOG00000016961 ENSRNOT00000022897 2 1 1 90 2 189572633 189572652 GCACAAACGGTAGTCTTGTG 60 189572247 189572581 TGAAGGAGCATCCTTCTGTC 60 NA Rattus norvegicus 81 Rps27 ENSRNOG00000016961 ENSRNOT00000022897 3 1 1 91 2 189572638 189572656 CCATGCACAAACGGTAGTC 59 189572250 189572583 AGGAGCATCCTTCTGTCAG 59 NA Rattus norvegicus 81 AC130940.1 ENSRNOG00000046229 ENSRNOT00000068212 1 1 1 130 15 33637414 33637432 TTTGAGTGTCCTGAGGACC 59 33637866 33637884 GAAGGACGAGGAGATGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 2 3 3 80 4 157246377 157246686 AACATTCTTCCCTTTGACCAC 59 157246317 157246337 GGCATTGATGTAATCAGACCC 59 NA Rattus norvegicus 81 Fam65b ENSRNOG00000018804 ENSRNOT00000048298 1 1 1 80 17 42338012 42338031 TGCTAGTGACATTGTGTCAG 58 42325157 42337970 AGTATGGAGCAAGAGACAGG 59 NA Rattus norvegicus 81 LOC303448 ENSRNOG00000054719 ENSRNOT00000089255 1 1 1 127 10 78688505 78688524 ACACATACATCCACATCCAC 58 78688325 78688343 TAGAAGTTTGCAGTGCCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC303448 ENSRNOG00000054719 ENSRNOT00000089255 3 1 1 129 10 78688505 78688524 ACACATACATCCACATCCAC 58 78688323 78688342 TATAGAAGTTTGCAGTGCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07029925.2 ENSRNOG00000060650 ENSRNOT00000074380 2 1 1 80 10 60151462 60190743 CGTGGCTAGATTGTCATTCTG 59 60151402 60151420 CACGCTAACTTGAGCAGAG 59 NA Rattus norvegicus 81 Ms4a6c ENSRNOG00000047349 ENSRNOT00000072077 3 1 1 80 1 227673656 227676404 AAATCCTTTGGTAGATGGCA 57 227676445 227676465 ACAGAGATGATAATGATGCCC 58 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878,ENSRNOT00000022849,ENSRNOT00000088647,ENSRNOT00000049426 2 4 4 80 9 117613893 117617652 AAGCAGATTCGAAGTGGTG 58 117617696 117617714 ATCTTCTGATAGCTGGGCA 58 NA Rattus norvegicus 81 Ypel4 ENSRNOG00000060130 ENSRNOT00000083592 1 1 1 81 3 72137644 72137988 GTTTAACTCCGTGGTCAACG 60 72138032 72138050 AATGTCAGCTACCGAGTGG 60 NA Rattus norvegicus 81 Rnf31 ENSRNOG00000019438 ENSRNOT00000026333 1 1 1 80 15 34282067 34282086 GCTACCTACATTTAACGCCC 59 34282127 34282254 CTCTCAGCTTCTGTAACAACC 59 NA Rattus norvegicus 81 Ctps2 ENSRNOG00000004257 ENSRNOT00000059031 2 1 1 80 X 33432420 33432440 CGATTTGGGAGGAACAATGAG 59 33417366 33432381 CCGTAAAGCTTCTTCAGTATGG 59 NA Rattus norvegicus 81 Olr1185 ENSRNOG00000039892 ENSRNOT00000061271 1 1 1 60 8 21164852 21164872 TAATCCCTTCATCTACAGCCT 58 21164893 21164912 CTGTAGTTTCCATAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060992.1 ENSRNOG00000045682 ENSRNOT00000011067 1 1 1 80 4 102290373 102290723 TTGGATTCCAGCTTCCAGG 60 102290765 102290785 GAAGCTTGATCTCCAAGTCTG 59 NA Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 1 2 2 80 14 88573312 88573330 GATGACTCTGCTGAGGAGG 59 88573374 88573497 ATCCTTCAACTCCAGCTGG 59 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 2 2 2 80 18 28381371 28381389 AAGGCACTTTGGTTTCAGG 59 28381433 28382545 GTTAGGAATCCTCAGCACC 58 NA Rattus norvegicus 81 Mir743a ENSRNOG00000041236 ENSRNOT00000062989 3 1 1 61 X 151252874 151252894 GTATTCAGATTGGTGCCTGTC 59 151252833 151252851 TCCACTCTACCCAGTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcnt1 ENSRNOG00000050534 ENSRNOT00000074939 3 1 1 60 1 236581514 236581534 AATTGTCAGGAAGCTCAAGTC 59 236581556 236581574 AGGCATCTTCTCAGTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lin9 ENSRNOG00000023304 ENSRNOT00000074148 1 1 1 80 13 98947412 98948756 AACCAAAGTTACAGCACGA 58 98948798 98948818 GCATTAAGAGTATCCACAGCA 58 NA Rattus norvegicus 81 Zfp395 ENSRNOG00000014191 ENSRNOT00000044562 3 1 1 80 15 48795829 48795850 AAACTGATCATGGCTTTGAGAC 59 48795889 48796370 TCACAGAGTTCTTCCTCTTCC 59 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000061158 2 1 2 85 15 18411108 18411127 GACATCGAGGGACTCATGG 60 18411176 18411194 GGGTTTAGCAGCTTCTTGG 59 NA Rattus norvegicus 81 Mllt1 ENSRNOG00000048736 ENSRNOT00000071211 1 1 1 80 9 10151251 10151270 GGGTCAGATGAGGATGACTC 59 10151313 10152803 GAAGCTTAGCCTGGACTCC 60 NA Rattus norvegicus 81 Ppm1a ENSRNOG00000005916 ENSRNOT00000008238 2 1 1 80 6 94474479 94476816 CACCTGTTTGTATAAGGGAAGTC 59 94476856 94476874 TCTGCTGAGACTTTAGGCG 60 NA Rattus norvegicus 81 Olr741 ENSRNOG00000053815 ENSRNOT00000087141 3 1 1 60 3 79121086 79121106 TTGACCACTACTTCTGTGACC 60 79121046 79121066 ACAAATGTGTCAGTACAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 2 2 2 80 18 37007715 37007735 ATGACCAGAGACTATCTGACC 59 36988932 37007675 GTCATGAACCTGGTATGTCTC 58 NA Rattus norvegicus 81 Ptprt ENSRNOG00000032656 ENSRNOT00000044466 1 1 1 80 3 157594928 157607097 CATCATATCTTATGACCACTCCC 58 157594870 157594891 TAGTTGGCATTGATGTAGTCTG 58 NA Rattus norvegicus 81 Brd9 ENSRNOG00000015676 ENSRNOT00000021000 3 1 1 80 1 31962265 31964822 TCAGTCACAGAATTTAAGGCAG 59 31962206 31962224 GTAGTACACGGTGTCTGGT 59 NA Rattus norvegicus 81 Slc35a5 ENSRNOG00000002069 ENSRNOT00000002853 3 1 1 80 11 60614958 60614982 CTGTTAGGTGTCATATTCATCACTC 60 60615018 60619784 ATACTTGTTCTCTTCGTTGGC 59 NA Rattus norvegicus 81 Mstn ENSRNOG00000021294 ENSRNOT00000038093 1 1 1 80 9 53315473 53315491 GCTCTTTGGAAGATGACGA 58 53313652 53315432 CTTGCATTAGAAAGTCAGACTC 57 NA Rattus norvegicus 81 Mstn ENSRNOG00000021294 ENSRNOT00000038093 2 1 1 80 9 53315475 53315493 CGGCTCTTTGGAAGATGAC 59 53313654 53315433 TGCATTAGAAAGTCAGACTCG 58 NA Rattus norvegicus 81 AABR07031963.1 ENSRNOG00000052952 ENSRNOT00000091759 1 1 1 80 18 40873120 40873398 ATATCATCCTGAGTGAGCCAC 60 40873439 40873458 ATCCATACCAGGTTCCTGTC 59 NA Rattus norvegicus 81 Zwilch ENSRNOG00000009303 ENSRNOT00000012404 3 1 1 80 8 69105063 69105081 TATGCTTGTCACAGTTCGG 58 69104402 69105021 TGATATGAAACCACACTGCTG 59 NA Rattus norvegicus 81 Abca8 ENSRNOG00000004040 ENSRNOT00000005489 3 1 1 80 10 98278485 98278964 GAGAAAGAGGTGCAAAGGG 59 98278423 98278442 TCCACCACTTAGGTTTCGAG 60 NA Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 2 1 1 69 6 24080567 24080585 TCTCTACTCGGTTCACAGG 58 24080615 24082916 CTGTACTGCAAGTTAACTACCT 58 NA DesignNoJunction Rattus norvegicus 81 Adam19 ENSRNOG00000042980 ENSRNOT00000008184 2 1 1 80 10 31231648 31231666 CTCAGAATGGTGGAACTGG 58 31231710 31231973 GGGTGTTAGTCACCTTTCG 58 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 1 2 2 87 3 7194089 7194917 GTAACAAGGTGTTCTCCACC 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Spcs2 ENSRNOG00000018164 ENSRNOT00000024772 1 1 1 95 1 164839426 164849646 TGGTTTGTTGGATAAGTGGA 57 164839350 164839368 TTGGCAGAATCATCCAGAG 57 NA Rattus norvegicus 81 Cep55 ENSRNOG00000016377 ENSRNOT00000022133 1 1 1 80 1 256755823 256755841 GAGAGCAGTGTCTTCAAGG 58 256755884 256757087 GTAGAGAATTCGGACCTGAG 57 NA Rattus norvegicus 81 AABR07026059.1 ENSRNOG00000031959 ENSRNOT00000058884 1 1 1 80 16 61928567 61934379 GCCCAGAAGTATCTTTAGTTAGAC 59 61934418 61934436 CTTTGCCGTGGTAACACTG 60 NA Rattus norvegicus 81 Ipo13 ENSRNOG00000019758 ENSRNOT00000026844 2 1 1 80 5 136737331 136737512 GCAGAAGAGATACCTAATCCCT 59 136737272 136737291 CAGTGTGGTAAAGAGGTTGG 59 NA Rattus norvegicus 81 Capg ENSRNOG00000013668 ENSRNOT00000018562 2 1 1 83 4 100416226 100416723 TGTATAAGGTCTCTGATGCCA 58 100416767 100416786 GAATTAGCAGTTCAGAGGCA 58 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 1 2 2 95 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312685 36312703 CTGTTCTTTAGCAGCCCAC 59 NA Rattus norvegicus 81 Slc6a4 ENSRNOG00000003476 ENSRNOT00000004717 1 1 1 80 10 63167664 63168903 ACAACAACTGTTACCAAGATGC 60 63167605 63167624 TGAAGATGACGAAGCCAGAG 60 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 1 2 2 83 4 7383683 7383701 AGGTGTTGGACATGTACCC 59 7383746 7384019 TCATGTTGGTATCTCGAAGGT 59 NA Rattus norvegicus 81 Agpat3 ENSRNOG00000001205 ENSRNOT00000001602 1 1 1 80 20 11130074 11130092 ACTCAAGTACCACCTGCTG 59 11130136 11131026 TAGATAGCTGCAACCGTCC 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719,ENSRNOT00000080684 3 4 4 80 17 43522915 43523203 ATATTGCTCCAAGGTATGCC 58 43522854 43522873 CAATGGGTACCATTACAGCA 58 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 1 2 2 80 20 7772710 7774761 ACCCAAAGAGGGCTATGAC 59 7774805 7774823 ACAGGGTGATGGATGTAGG 59 NA Rattus norvegicus 81 AABR07051735.1 ENSRNOG00000031229 ENSRNOT00000050435 2 1 1 60 3 20517998 20518019 TAATAGTTGGTTATCCTGGCAC 58 20517959 20517979 ATAGATGAGTAGTTGTGGAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 1 2 3 80 9 10369870 10369891 TTGTGTTTCAGAAGGACAAAGG 59 10359318 10359415 CCTCATGATCAGAGTCTTCTCC 60 NA Rattus norvegicus 81 Socs2 ENSRNOG00000008965 ENSRNOT00000011948 2 1 1 81 7 36497160 36498867 TCAAACAGGATGGTACTGGG 60 36497098 36497117 CAAGAAAGTTCCTTCTGGCG 60 NA Rattus norvegicus 81 Zfp804b ENSRNOG00000031306 ENSRNOT00000045346 1 1 1 97 4 24222550 24222571 CAAATCATGGAAAGATGAGAGG 57 24222627 24228370 CGTTTCCAGAAACACATTCAG 58 NA Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 3 2 2 83 8 11904563 11909128 TTTGTATGCTGGCAAGAGGA 60 11909171 11909192 GGTTGAATAAAGCGATCATCCA 59 NA Rattus norvegicus 81 RGD735029 ENSRNOG00000019276 ENSRNOT00000026273 2 1 1 91 18 31397848 31397948 CTTTGACAGATCAGGCTCC 58 31398003 31398021 CATGAGCAGACATCCAGTG 58 NA Rattus norvegicus 81 Golt1b ENSRNOG00000058386 ENSRNOT00000084700 3 1 1 81 4 176615335 176615353 TGGTGGTTGGCTTTATCAG 58 176615396 176617327 ACCTTGTCTACGAATGATCTG 58 NA Rattus norvegicus 81 Tmem176a ENSRNOG00000023708 ENSRNOT00000049891 3 1 1 93 4 78461265 78461730 CATGCTAAAGACCCTGCTC 58 78461785 78461805 GTAGACACATACAGGGATGAG 57 NA Rattus norvegicus 81 S1pr2 ENSRNOG00000020653 ENSRNOT00000028034 3 1 1 150 8 21995777 21995795 AACAGTCACCAAAGTCAGC 58 21987493 21987511 CTCTGAGTATAAACCGCCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fem1b ENSRNOG00000007077 ENSRNOT00000009368 1 1 1 148 8 67707931 67707949 TATGTCAGTCAGCAGGGAG 59 67696727 67707819 TCAATGACATACCCGTCGA 59 NA Rattus norvegicus 81 Dusp21 ENSRNOG00000024138 ENSRNOT00000000173 1 1 1 60 X 4957413 4957432 ACAGCATCTTGTATCCTTCC 57 4957372 4957396 GAGAAAGACCATAGATGTTATCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364827 ENSRNOG00000048656 ENSRNOT00000050384 3 1 1 60 2 31379029 31379047 TCAAGCACTCAAAGAGCAG 58 31379071 31379089 TCCTTCTGATCGTTCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmnd5b ENSRNOG00000047719 ENSRNOT00000075525 3 1 1 80 10 37074210 37074229 CCCTATCAAGCTCATCTGTG 58 37074070 37074168 GGACACTTTAGCTTTCCTCC 58 NA Rattus norvegicus 81 Snapc5 ENSRNOG00000010156 ENSRNOT00000013490 2 1 1 93 8 69127812 69129193 GTCTCAAGGTCGAAGAATTGG 59 69129247 69129266 CATAACTGTTCAGGTGCAGG 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054,ENSRNOT00000036050 2 2 2 80 5 33593754 33594919 TTTGCTGCTCATAAGTGGT 57 33594962 33594981 GGCATTTGCAATCTTAACCT 57 NA Rattus norvegicus 81 Ap4m1 ENSRNOG00000001353 ENSRNOT00000001827 3 1 1 81 12 19314486 19314999 CCGGTTGTCATGTATCACG 59 19315044 19315062 TTTCTGAAGTTGTGGCCAC 59 NA Rattus norvegicus 81 Lime1 ENSRNOG00000049336 ENSRNOT00000019545 1 1 1 80 3 176883841 176883859 GAAGCACAAAGGGACAGAG 59 176883901 176884017 AAGACATCCATCTGAGTAGCT 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000048154 3 1 2 61 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53233492 53234791 TCTCTAAGAAGTTTCTCTTCCTACC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1311343 ENSRNOG00000027852 ENSRNOT00000036447 3 1 1 93 10 15951646 15951667 AGGTCATTTCCAGAATGATTGC 59 15949769 15951598 CATCTTGTAGTAACTGGAATGTCAC 60 NA Rattus norvegicus 81 Hist1h2bg ENSRNOG00000021198 ENSRNOT00000028779 1 1 1 153 17 43688959 43688977 ATTACAACAAGCGCTCGAC 59 43680386 43688842 GTCTACTCCTCTTGGCACG 60 NA InUTR Rattus norvegicus 81 Vom1r36 ENSRNOG00000031899 ENSRNOT00000047856 3 1 1 60 1 72183481 72183501 GAACACTTGTCTCTGGTTAGG 58 72183441 72183460 AATGGTAGGGAAGCTTACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr2 ENSRNOG00000002793 ENSRNOT00000003735 2 1 1 118 10 102136554 102141639 AAAGCAAGATGTCACGATAGAC 59 102141718 102141736 ACTGCTCAGAGGTCAACTC 59 NA InUTR Rattus norvegicus 81 Olr1071 ENSRNOG00000008464 ENSRNOT00000011188 2 1 1 60 7 9591939 9591958 TTCATCCTTGTAGGCTTCAG 57 9591898 9591916 GAAAGAGCAGGAAGAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680370 ENSRNOG00000043402 ENSRNOT00000066493 3 1 1 98 X 43871257 43878750 AGCATTATAGGCAATTGACGAG 59 43871180 43871198 TGCTATGGTACTTGCAGCA 59 NA InUTR Rattus norvegicus 81 LOC100910553 ENSRNOG00000049652 ENSRNOT00000074265 3 1 1 60 15 35534732 35534754 CATGTACTTACAGCCATCATCAG 59 35534772 35534792 AAACACAGATGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079,ENSRNOT00000032316 1 2 3 162 18 29492131 29492149 GAAAGTTCCTGCTGGAGTG 59 29492274 29492409 TGTTCGTCATCGGTTATCTC 58 NA Rattus norvegicus 81 Tyr ENSRNOG00000016421 ENSRNOT00000021971 1 1 1 80 1 151014180 151023047 GTTACCTACAAGAATCAGATCCAG 59 151014123 151014141 ATGGCCAGATACGACTAGC 59 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000016851 3 1 2 80 1 267607689 267607708 TACAGCATGAGGTTCTGTCC 60 267607750 267610342 GTTGATGATTTCATGCCGGA 59 NA Rattus norvegicus 81 Fance ENSRNOG00000000504 ENSRNOT00000006191 3 1 1 81 20 7898339 7898731 TCTTTCTTGACCGGATCCTC 59 7898775 7898793 TACTTGGCACAGAAGGAGG 59 NA Rattus norvegicus 81 LOC500300 ENSRNOG00000023465 ENSRNOT00000018133 1 1 1 80 4 148782618 148783456 GCTGACTTACAGCAATGAGG 59 148783497 148783517 ATAGCTCCTCTGAAGTTTCCC 59 NA InUTR Rattus norvegicus 81 Abt1 ENSRNOG00000017585 ENSRNOT00000023649 3 1 1 87 17 43947202 43947222 GGCAGCTAGTCTACATAACAC 58 43947270 43947439 ACGATGCAAATACTTGAGGT 58 NA Rattus norvegicus 81 Zfp853 ENSRNOG00000030579 ENSRNOT00000074138 2 1 1 145 12 13324041 13324060 ATTCCTCTTAGCACAGCCTG 60 13324168 13326676 CACCACTGCTACCTGAGAG 60 NA Rattus norvegicus 81 Ephx2 ENSRNOG00000017286 ENSRNOT00000023385 1 1 1 80 15 42758245 42758533 GAAGGAAGATCTTGGTCCC 57 42758183 42758203 CCATGTTCTTGGACATTTCAG 58 NA Rattus norvegicus 81 Olr1418 ENSRNOG00000061794 ENSRNOT00000050448 1 1 1 60 10 44025801 44025824 CTGCTATCTATAACTACATGCTCC 59 44025764 44025782 ACCACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r44 ENSRNOG00000033483 ENSRNOT00000046788 1 1 1 60 1 67175270 67175288 ACATTGGTCCTTCCTGCTC 60 67175228 67175249 GGAGTCAAGATGTTTAGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909958 ENSRNOG00000048702 ENSRNOT00000071050 1 1 1 60 8 42833144 42833167 CATTCTTCTCACTATTGTCTCCTC 59 42833185 42833204 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam84b ENSRNOG00000004744 ENSRNOT00000006279 3 1 1 60 7 101139930 101139948 CTGGTGGAGTTTGTATCGC 59 101139888 101139906 GGAAATTGCCCACGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378,ENSRNOT00000041373 1 2 2 60 6 73361027 73361045 TCCCTACAACAACTACCCA 58 73361068 73361087 TGGACTATATGGAGGTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 3 2 2 80 14 7756513 7757470 GAGATTATCAACCAGAGGTTCAC 59 7756455 7756474 CAAGCTTCTCCATCACTCTG 58 NA Rattus norvegicus 81 Wdr88 ENSRNOG00000037393 ENSRNOT00000056583 3 1 1 80 1 91508923 91508941 CAGCCTTGGATGTGAATCG 59 91507467 91508881 GGTGTTGAGCTTTCATATGGA 58 NA Rattus norvegicus 81 Mtmr9 ENSRNOG00000011560 ENSRNOT00000015452 2 1 1 80 15 46715535 46715554 AAGTGATTGAAGATGGCTGG 58 46712512 46715492 GTCTCCATTCACTGGTAGC 58 NA Rattus norvegicus 81 LOC100912054 ENSRNOG00000048549 ENSRNOT00000044283 1 1 1 60 8 42309429 42309449 ACACAGGATGTATGCTAAGAC 58 42309469 42309489 CAGAAGTAATGGTTGATGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911068 ENSRNOG00000049289 ENSRNOT00000043344 2 1 1 82 8 39083905 39083924 ATCAGGACAGTGTACTCACC 59 39083714 39083860 TACACTGTTCGTGGGTGTC 60 NA Rattus norvegicus 81 Trpm2 ENSRNOG00000001216 ENSRNOT00000001631 2 1 1 80 20 11479318 11479336 GAAGCTGAAACAGGTCCTC 58 11479379 11480770 CCTTTGTACACCTCTGTACC 58 NA Rattus norvegicus 81 Wipi2 ENSRNOG00000001114 ENSRNOT00000001476 2 1 1 81 12 13990381 13997877 GGATAACACGTCCCTAGCT 59 13990318 13990338 GATCTGTTCCAGCTTATCCAC 59 NA Rattus norvegicus 81 Npr3 ENSRNOG00000019184 ENSRNOT00000025966 3 1 1 80 2 61924909 61936590 GTTCTTCTTACGGAGATGGC 59 61924848 61924867 TTTGGAGGGATGAGTAAGCT 59 NA Rattus norvegicus 81 Robo3 ENSRNOG00000030016 ENSRNOT00000064141 3 1 1 80 8 39904347 39904366 ACGTGTCTTTCCAATGTGAG 59 39902585 39904305 AAAGCAAGACTTGACTCCCT 59 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 3 3 3 81 7 116156935 116157190 GAGACCTTGAGGCTCTACC 59 116156872 116156893 GGACATGATAGTTCTGAAGCAC 59 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 3 3 3 80 2 158091956 158091974 AGCAGACAGAACAGTACCA 58 158083023 158091913 CACATTTCTGAACCACCTCC 59 NA Rattus norvegicus 81 Far2 ENSRNOG00000001851 ENSRNOT00000002528 1 1 1 80 4 182551846 182552509 TACTGCCGTTCATAGACCT 58 182552552 182552571 ATTTCGTACCAGTTACAGGG 57 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162,ENSRNOT00000050547 2 2 2 81 13 90274630 90274650 ACTTATACATGTACAGCCTCG 57 90274693 90275059 TGGGAGAGTCTGTACATGG 58 NA Rattus norvegicus 81 Cox19 ENSRNOG00000050052 ENSRNOT00000072509 1 1 1 92 12 17395722 17398250 TAGACCACTTCGGTGAGTG 59 17398305 17398324 ATTCATTTCTGCACAGAGCA 58 NA Rattus norvegicus 81 Cnpy4 ENSRNOG00000027175 ENSRNOT00000033288 1 1 1 80 12 19334194 19334296 CTGAAACTGCTTGTCTCCA 58 19334340 19334358 CCTCCTCTTCCTCTGTCTC 58 NA Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 1 2 2 80 2 196296204 196296224 GAGATCCTAAGGACCTTGAGC 60 196296265 196296487 CAGCATGTTCTCAGGATCCA 60 NA Rattus norvegicus 81 Olr1738 ENSRNOG00000029883 ENSRNOT00000041883 3 1 1 60 20 1787546 1787566 GCTTGAGAACTTCTTCTCCAC 59 1787588 1787606 AAGCTGAGTTATGCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770,ENSRNOT00000058834,ENSRNOT00000058833 1 3 3 80 X 36945060 36945078 TCCGTCAAAGAGAAGAGGA 58 36944202 36945019 AGATAGATCCAATAGGATGCCA 58 NA Rattus norvegicus 81 Dock8 ENSRNOG00000015894 ENSRNOT00000015668 1 1 1 80 1 243032705 243038709 CGTAGATGAGGAGGATGCTG 60 243038750 243038770 TTCACCAATATTCTGTTGCCC 59 NA Rattus norvegicus 81 Klk8 ENSRNOG00000018580 ENSRNOT00000025174 2 1 1 81 1 99736777 99736796 AATCTGTGTCCCAAAGTTGG 58 99736837 99740285 TGTTTGGAAAGTTCTCTTGAGG 59 NA Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 1 2 2 80 18 47842789 47850109 GGCCATCAAGAATGGTCAG 59 47850153 47850171 TTGGAACAACTCAGTTCCG 58 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 1 2 2 85 2 94694208 94694231 CTGGAGTAAGATCCTTTAAGTGTG 59 94693888 94694165 TTTATGCACCAGGGAATGTC 58 NA Rattus norvegicus 81 Ddx1 ENSRNOG00000006652 ENSRNOT00000009100 3 1 1 80 6 38423921 38423944 GATATAAAGGTTCCAGTGGATGAG 59 38423203 38423883 TTTATAGTTCCCACCGCCAG 60 NA Rattus norvegicus 81 Gfra2 ENSRNOG00000014010 ENSRNOT00000019222 2 1 1 82 15 52636395 52636413 CCTACCGGACAATCACCAG 60 52636456 52637180 CATATCAAACCCAATCATGCCA 60 NA Rattus norvegicus 81 Il20rb ENSRNOG00000023214 ENSRNOT00000034188 1 1 1 80 8 108758762 108763688 AATCGGAATGCAACTGTTCTC 59 108758702 108758720 GTCTTCCAGCTCAACAACC 59 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 2 1 1 109 10 103870585 103873080 GAGGTGACCCGGATAAGTG 60 103870494 103870512 GATATTGGCTCCGAACGAC 59 NA DesignNoJunction Rattus norvegicus 81 Bcl11a ENSRNOG00000007049 ENSRNOT00000083146,ENSRNOT00000009421 2 2 2 80 14 108906183 108911068 GCAGGGTATTTGTAAAGATGAG 57 108911109 108911127 AAGAGAAACCATGCACTGG 58 NA Rattus norvegicus 81 AABR07067499.1 ENSRNOG00000038911 ENSRNOT00000059478 1 1 1 80 9 49448143 49448162 ACTCCTAACTTGGACACGAC 60 49445666 49448103 CACAGTCGCTGTAATATGTCTC 59 NA Rattus norvegicus 81 Dcaf4 ENSRNOG00000008399 ENSRNOT00000011378 2 1 1 80 6 107007257 107007275 ACGAGTAGGAGAAGACGAG 58 107007319 107015581 TGAGGTGTACCTCTCACTG 58 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 1 2 2 80 10 38945291 38945309 AGGAGGCACAAGGAAAGAC 60 38945352 38945945 GGAGATCAGCCATCTCTGAC 60 NA Rattus norvegicus 81 Olr233 ENSRNOG00000046869 ENSRNOT00000049607 3 1 1 60 1 171208634 171208658 GGGATTATTACCTATATGACTCCGA 59 171208598 171208618 AAACAGACACCAGTTTCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 3 2 2 80 15 41121548 41121569 GTCACCTTATATGCAGAACAGC 60 41121608 41123146 AGATTCATGAACAACAGCCAG 59 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446 3 1 2 83 14 12988135 12988155 GGATTGTAGGAATACGAGGAG 58 12975259 12988091 TAAATTTGGCACTTGCATGG 58 NA Rattus norvegicus 81 Dolk ENSRNOG00000016989 ENSRNOT00000022786 3 1 1 60 3 8850506 8850525 ACATTCGAGGGAACTATGAC 57 8850465 8850484 TTAGGATCAGAGCCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl21c ENSRNOG00000011591 ENSRNOT00000015492 1 1 1 80 9 50755632 50759069 CAGGACCCTCAGTAGAGTC 58 50755570 50755588 AGCTGGCATAGTCTGTAGG 59 NA Rattus norvegicus 81 Btbd3 ENSRNOG00000008088 ENSRNOT00000010835 3 1 1 80 3 131352876 131353430 TGCCAGGACACAAATACGT 60 131353472 131353492 CTTTGTCCTCAGCAAGTTCTC 59 NA Rattus norvegicus 81 Bola3 ENSRNOG00000021866 ENSRNOT00000031583 1 1 1 98 4 115048643 115050496 CAGACATCTCAGGAGGCTG 60 115050558 115050576 GATTGACCATCTGGTGCTG 59 NA Rattus norvegicus 81 Bola3 ENSRNOG00000021866 ENSRNOT00000031583 3 1 1 100 4 115048643 115050496 CAGACATCTCAGGAGGCTG 60 115050560 115050578 CTGATTGACCATCTGGTGC 59 NA Rattus norvegicus 81 Gpx8 ENSRNOG00000010461 ENSRNOT00000013979 3 1 1 80 2 44906837 44906858 TCTACTCCTTTGAAGTGAAGGA 59 44906314 44906798 TTACAACTAGGGAAGCTTTGC 59 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231,ENSRNOT00000081677 3 2 2 80 9 55386006 55389466 GTATCACAAGGAAATGTCCCAG 59 55385947 55385968 TTGTGTTGTCTGAACTGTAGTG 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 3 2 2 80 9 10021188 10021292 ATGACCCAAACAAAGCTGC 59 10021336 10021354 GTTGCTGGTAGTAGTGGGA 59 NA Rattus norvegicus 81 Btn2a2 ENSRNOG00000038877 ENSRNOT00000059403 3 1 1 80 17 43875945 43876056 CTTCAAGAGGAACTGCAATGG 60 43877761 43877781 CTCAGGATGAGCTGTATCTGG 60 NA Rattus norvegicus 81 AABR07051791.1 ENSRNOG00000046568 ENSRNOT00000071143 3 1 1 60 3 21521430 21521450 TGCTTATTGAACCCTTCTCCA 60 21521845 21521863 ATCACATCTGGAAGCTCCG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912474 ENSRNOG00000045635 ENSRNOT00000071521 1 1 1 60 1 103682113 103682131 ACAATTCTCCTCCTGTCCT 58 103682071 103682092 CAACAAGTAAGCAAATGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdh1 ENSRNOG00000008103 ENSRNOT00000011429 2 1 1 80 14 106379930 106379950 TAATCTCTGATGGCAACTCCT 59 106379258 106379891 TCCAGGTCTTATTCTTGATCAC 58 NA Rattus norvegicus 81 LOC100360933 ENSRNOG00000036981 ENSRNOT00000055614 3 1 1 91 1 143317680 143318053 CAACTCAGACCCTGGTAGG 59 143317607 143317626 TTCTAACTCCACCTCCTGGA 60 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 2 2 2 80 7 116420178 116421067 AGAAGTTGTTGTGAGCTCTG 58 116420117 116420135 GGTGTTTGAGGACTCTTGG 58 NA Rattus norvegicus 81 Timmdc1 ENSRNOG00000002999 ENSRNOT00000004023 3 1 1 83 11 64791019 64791038 GCGTTCTTATGTCTCAGACC 59 64791083 64795088 TTCCGCTGTTCATCTTTGAC 59 NA Rattus norvegicus 81 Cryz ENSRNOG00000028319 ENSRNOT00000032808 2 1 1 80 2 260910396 260910415 GATAAACCCAAGGGACACCA 60 260910458 260910803 TGGAATTCCTCCTTGGTGG 59 NA Rattus norvegicus 81 Olr295 ENSRNOG00000033387 ENSRNOT00000045179 2 1 1 60 1 212911420 212911439 CTGTGTTCTGTGCCTATGTC 59 212911379 212911399 GTAACTTTGCTTCTTTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pigq ENSRNOG00000020140 ENSRNOT00000027353 3 1 1 80 10 15294783 15294801 CAAGATGAATCGGGCACTG 59 15294447 15294741 AGGTGGATATAGCTGATCCAC 59 NA Rattus norvegicus 81 Gga1 ENSRNOG00000008897 ENSRNOT00000063876 3 1 1 80 7 120113725 120113891 ACCTCATGAAGGAACTGTACC 60 120113931 120113951 CATTGTCTTCTGTGTCACTGG 59 NA Rattus norvegicus 81 Lhcgr ENSRNOG00000016712 ENSRNOT00000022481 2 1 1 80 6 12528756 12528776 TGAATAACGAGTCTGTCACAC 58 12527072 12527455 ATTGAGACCCAGAATTGCC 58 NA Rattus norvegicus 81 Zfp553 ENSRNOG00000017837 ENSRNOT00000023995 1 1 1 60 1 198682756 198682774 CCTACAAGTGTGGTGTCTG 58 198682798 198682816 TGATGTTTGATTCGGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911545 ENSRNOG00000045772 ENSRNOT00000075799 3 1 1 80 4 154461904 154461926 GTAGAAGATGAAGTCACCTTGTC 59 154461965 154462889 GACAACAGGATGAGTGACAG 58 NA Rattus norvegicus 81 RGD1563349 ENSRNOG00000005818 ENSRNOT00000007723 2 1 1 80 4 21609299 21610057 AAAGCACCCAGGATCACTC 60 21609237 21609256 AGTCATAGTGCAGACTCTGG 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597,ENSRNOT00000089006 1 2 2 80 14 79946842 79946862 GATTCTAAGCACCCATTGACC 59 79945154 79946802 GTCTTCAGAAGATGATGCCTC 59 NA Rattus norvegicus 81 Trim16 ENSRNOG00000003219 ENSRNOT00000065335 1 1 1 80 10 49245813 49248294 CTTCCTGGAGGAGTACTGC 59 49248338 49248356 AGTTTATCCTTCAGCCCGA 58 NA Rattus norvegicus 81 Calr3 ENSRNOG00000013260 ENSRNOT00000018018 3 1 1 81 16 19121541 19121559 TACCTGACGCAGTATGACC 59 19121604 19123068 TGGTTCCAGATCTCACCTG 59 NA Rattus norvegicus 81 Dnajc17 ENSRNOG00000012368 ENSRNOT00000016692 3 1 1 80 3 110991151 110991382 TAGAGCAGGAGATTGCTCG 59 110991089 110991107 GGATCTGCTCCTGGATCAG 59 NA Rattus norvegicus 81 Commd1 ENSRNOG00000009281 ENSRNOT00000012750 3 1 1 85 14 107759697 107759715 CCAACTCTACCCGGAAGTG 60 107728878 107759651 CTGCAGATGCAATAGACTTGAG 60 NA Rattus norvegicus 81 LOC682831 ENSRNOG00000050041 ENSRNOT00000071500 1 1 1 60 X 60552147 60552165 GCAACCGTAATGTCAGCTC 59 60552186 60552207 CACATCACAAATGTAAATGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept9 ENSRNOG00000002807 ENSRNOT00000003891 3 1 1 80 10 106265478 106329702 ATATCGGAACCAGGAAGACTC 59 106329743 106329762 TTGAGCATGGCATCTCTAGG 60 NA Rattus norvegicus 81 Olr508 ENSRNOG00000053924 ENSRNOT00000080756 3 1 1 60 3 73839135 73839154 CCATCTGTAAGCCTCTCCTC 59 73839094 73839112 ACTAGGACCCAACATACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt2 ENSRNOG00000009267 ENSRNOT00000012286 1 1 1 80 14 107594856 107616252 CCCTAGACAAGATATGAGAAATGAG 59 107594800 107594821 TGAAGACATTTGCTGTCATCAG 59 NA InUTR Rattus norvegicus 81 Tipin ENSRNOG00000043068 ENSRNOT00000066973 1 1 1 80 8 69753495 69754154 TGATGAAGGATCAGGGAGTG 59 69754194 69754215 GCATCTAGCTTGGGTATATTCC 59 NA Rattus norvegicus 81 Fam32a ENSRNOG00000039528 ENSRNOT00000019556 2 1 1 96 16 19308583 19308601 AGCAAGAAGAACGAGGAGG 59 19306426 19308523 TTTCCATTTGCCGCTTCTC 59 NA Rattus norvegicus 81 Fam32a ENSRNOG00000039528 ENSRNOT00000019556 3 1 1 98 16 19308585 19308603 CGAGCAAGAAGAACGAGGA 60 19306426 19308523 TTTCCATTTGCCGCTTCTC 59 NA Rattus norvegicus 81 AABR07065656.8 ENSRNOG00000056760 ENSRNOT00000042118 2 1 1 60 6 138931000 138931019 CAAATGGACAGTCTGAGGTC 58 138930665 138930978 AATTTGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1565323 ENSRNOG00000021789 ENSRNOT00000065674 1 1 1 83 17 32973861 32975575 CCTCCTACAGACGTCAAGAG 59 32975621 32975639 TTTCATCTCCCTCCGTCTC 59 NA Rattus norvegicus 81 Tram1l1 ENSRNOG00000009835 ENSRNOT00000013030 2 1 1 60 2 228545059 228545081 GCTTACTGGTTTCATAGTTTCCC 60 228545095 228545119 GGATATCTTGTTTCCTGACTTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1155 ENSRNOG00000032512 ENSRNOT00000048500 2 1 1 60 8 19332170 19332193 GAATCCCTTTATCTACAGTCTGAG 58 19332133 19332152 GAAGAATTTCCTCACAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 1 2 3 80 1 101691073 101691091 CAGAGGAGGAATTGAAGCC 58 101691134 101692358 ACTTCTCATCCTTCTGTTCC 57 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 3 2 3 80 1 101691076 101691095 AGGAGGAATTGAAGCCTCAG 60 101691134 101692361 AGTACTTCTCATCCTTCTGTTCC 60 NA Rattus norvegicus 81 Dppa3 ENSRNOG00000022950 ENSRNOT00000031353 2 1 1 80 4 155437707 155437725 CGTGAACCCAGAAACTCAG 59 155437766 155439776 TGTAGGATTTCTGAATCATCCG 58 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 3 2 2 92 5 157764179 157764197 TGTCCAACTATGCCTCCTG 59 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 RGD1307537 ENSRNOG00000033763 ENSRNOT00000048146 1 1 1 80 17 30642149 30653576 ACCATCATTGTCAGGTGGA 59 30642087 30642105 AAGTGCTGACAGTCTTTGG 58 NA Rattus norvegicus 81 Ssr2 ENSRNOG00000019940 ENSRNOT00000027123 2 1 1 81 2 187952599 187952618 CTTCCCTCCAGAAGACTTCG 60 187952662 187955602 GGAGACATTGCTAGCAGGA 59 NA Rattus norvegicus 81 Zfp322a ENSRNOG00000017318 ENSRNOT00000023268 2 1 1 82 17 44026312 44031288 GGTTCTTGTTAAGAAAGCCGT 59 44031331 44031350 AATGTAGACAGACGACAGGT 59 NA InUTR Rattus norvegicus 81 LOC100909885 ENSRNOG00000012079 ENSRNOT00000016117 3 1 1 60 8 42779681 42779702 TGATCCTGCTCATCATAGTCAG 60 42779720 42779741 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltf ENSRNOG00000031779 ENSRNOT00000047752 2 1 1 80 8 119298303 119298323 GTGAGTGTTGGCAAGATTACC 60 119298365 119299529 ATCAGCATCTCCCATCGTG 60 NA Rattus norvegicus 81 Rn60_14_0458.1 ENSRNOG00000051043 ENSRNOT00000077059 3 1 1 60 14 45951073 45951093 GAAAGGTCGTTATCTGTTCGT 59 45951033 45951054 CTTCTTCACATGTTCTCTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msh6 ENSRNOG00000016134 ENSRNOT00000021923 1 1 1 80 6 11661148 11661669 CTTGTGGATGAATTAGGAAGAGG 59 11661706 11661727 TTCAGCGAGTTCTTTAACAACC 60 NA Rattus norvegicus 81 LOC691670 ENSRNOG00000049919 ENSRNOT00000059662 2 1 1 159 15 35164170 35164398 CTATTAAAGCTGAAGAGAAAGGCC 60 35164034 35164052 CCTCTTGTAAGAGGGCAGG 60 NA Rattus norvegicus 81 Mrps15 ENSRNOG00000008279 ENSRNOT00000011565 1 1 1 80 5 144054644 144054892 GCCTACAGACTCCTAGTCTC 59 144056104 144056123 GTTCATCATCTTGCTTGGCT 59 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000050922 ENSRNOT00000072875 2 1 1 112 1 198044606 198044964 TCTTATGTCGTCGGTGGAG 59 198044512 198044530 TTCTGGAACTTGGTCAGCA 59 NA Rattus norvegicus 81 Pmvk ENSRNOG00000020696 ENSRNOT00000028095 2 1 1 81 2 188784404 188784422 CTGGTGTTGCTGTTTAGCG 60 188784466 188786662 TGTTACCTCCAAGTCTGCTC 60 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965,ENSRNOT00000063861,ENSRNOT00000084678,ENSRNOT00000042654 3 4 5 80 X 64311463 64311482 TCCAGTACAGAAGATCTGCA 58 64307683 64311422 CTGTAATCACTGTGGTCTTGG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076190 3 1 5 60 X 64248965 64248985 ATCCTGTTTCTCCATCCAGTC 60 64248925 64248945 GTAGTGCCTTCACAAATTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdon ENSRNOG00000011789 ENSRNOT00000016248 1 1 1 80 8 36676870 36680763 CTAGGCATAGTGGAGTCCC 59 36680806 36680825 TCCAGGTGACATAGACTGAG 58 NA Rattus norvegicus 81 Polr3b ENSRNOG00000007432 ENSRNOT00000009746 1 1 1 80 7 24801360 24801378 GTCTCCATCTCCACAAACC 58 24798363 24801316 AATGATGTAAGGCCTGCAC 58 NA Rattus norvegicus 81 Lrrc55 ENSRNOG00000028266 ENSRNOT00000031745 2 1 1 116 3 72597856 72601811 GTACAGCGGATTCTCAGCT 60 72597758 72597776 CATCCAGGGTCAGAGTCAG 59 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 1 2 2 80 11 61467131 61468658 CAACATCTATCTGCATGTCCA 58 61467071 61467091 GTCTCGATAATCTCAAAGCCA 58 NA Rattus norvegicus 81 Mageb5 ENSRNOG00000003110 ENSRNOT00000004145 2 1 1 80 X 60850237 60852484 ACTGAAGACTATACTCCTACCT 57 60850178 60850197 TTATTCTTCAAGCGTTTGCG 58 NA InUTR Rattus norvegicus 81 Olr285 ENSRNOG00000032092 ENSRNOT00000050657 3 1 1 60 1 173392756 173392775 ATTGTCATGGTTCCCTTCCT 59 173392715 173392735 GGATGGTGAAGAGAATTCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000001014 2 1 3 84 20 2101567 2103340 CAAGGAGAGGATATGAGAAAGAC 58 2101284 2101302 CTTCAGGGAGATCCTCCTC 58 NA Rattus norvegicus 81 Plekhm3 ENSRNOG00000023760 ENSRNOT00000032782 3 1 1 80 9 71617689 71631170 GAAATACAGAACACAAGCAGAC 58 71617630 71617650 AGTAACTGTCATGGTTCTTCC 58 NA Rattus norvegicus 81 Dusp3 ENSRNOG00000036798 ENSRNOT00000084217,ENSRNOT00000055194 2 2 2 90 10 89913363 89913381 CAGACTTCATTGACCAGGC 59 89908376 89908394 ATGACTAGCGTTGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Efcab10 ENSRNOG00000010730 ENSRNOT00000014252 1 1 1 84 6 52705840 52705961 TGTGCAGTATAAAGAAGCCCT 60 52706007 52706025 CAGAGTGATCGCATGTCCA 60 NA Rattus norvegicus 81 Mir3542 ENSRNOG00000050699 ENSRNOT00000072537 2 1 1 68 17 9636484 9636502 ACTATGGTAGGGAGAGTGG 57 9636534 9636552 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Medag ENSRNOG00000000906 ENSRNOT00000001205 3 1 1 80 12 6721311 6740294 CAGCAGTTACATCAAGAGATACG 59 6721253 6721273 GGTTTGCTCAGTATCGTTTCC 60 NA Rattus norvegicus 81 LOC100912067 ENSRNOG00000047723 ENSRNOT00000073027 1 1 1 60 8 41247581 41247599 GGACTGACAAACCAACCTG 59 41247621 41247641 TATAGTTCACCAGGAACAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912067 ENSRNOG00000047723 ENSRNOT00000073027 2 1 1 60 8 41247892 41247910 TTACGATCGCTATGTTGCC 58 41247933 41247952 CACAGGAGACATGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb20 ENSRNOG00000023384 ENSRNOT00000031922 3 1 1 81 3 147952911 147955264 GTTTGTGGTACTTGCAGACAG 60 147955307 147955325 TAGTCTGCATCGCTTCCTG 60 NA Rattus norvegicus 81 Olr621 ENSRNOG00000060243 ENSRNOT00000084665 2 1 1 83 3 76544289 76544309 CTGTAAGCCTCTAAGGTACAC 58 76544354 76662495 ATACAAGACCCTACCCAGG 58 NA Rattus norvegicus 81 Wibg ENSRNOG00000058130 ENSRNOT00000092037 3 1 1 106 7 3173301 3173319 AGGCCAAGAAGTTACCTCG 59 3173389 3192582 GAGGCAATGTACTTGCCTG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0646.2 ENSRNOG00000051249 ENSRNOT00000075900 1 1 1 60 X 63683467 63683486 TTCACCTCAAAGAAGACCAG 58 63683509 63683527 TTCACAACTTCCTTGACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc88a ENSRNOG00000004057 ENSRNOT00000067591 1 1 1 80 14 113906722 113906741 GATCTCTAAACATGGCACCC 59 113906782 113907016 TGATTGTAACGGTCTTCAAGG 58 NA Rattus norvegicus 81 Rn60_X_0647.1 ENSRNOG00000051094 ENSRNOT00000077067 3 1 1 60 X 63692029 63692048 GCAGAGTTATTGGAAGTGGT 58 63691988 63692006 TCTCCCATCAGGTAACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir743b ENSRNOG00000041260 ENSRNOT00000063013 2 1 1 60 X 151253360 151253379 AGACTGGTGTCCATCATGTG 60 151253319 151253341 GAGCCTTACTCTATTCAGTATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 1 2 2 80 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958189 26958207 CATTGATCTTCACGCCCAC 59 NA Rattus norvegicus 81 Ttf1 ENSRNOG00000039777 ENSRNOT00000061029 1 1 1 80 3 7657802 7657824 CTTCCTCTTCAAAGACATCTTCC 59 7657864 7658957 TGTGTATCAGAGGTGCTGG 59 NA Rattus norvegicus 81 Edn1 ENSRNOG00000014361 ENSRNOT00000019361 2 1 1 81 17 22138009 22139401 ACTAAGAAGGTTGGAGGCC 59 22137946 22137964 GTCTCTGTAGAGTTCCGCT 59 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 2 1 1 63 20 7217528 7219153 CAAAGGTCCAGAGGGTGAG 60 7217483 7217501 GTAGGTGTCTCTGTCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 1 1 5 175 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80530908 80531281 CTATCTCCTCTACTGTGCCG 59 NA Rattus norvegicus 81 AABR07051733.2 ENSRNOG00000057344 ENSRNOT00000050573 2 1 1 60 3 20479977 20479996 ATCCAGATGACACAGTCTCC 59 20479936 20479957 TGATGGTGACAATTTCTTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910,ENSRNOT00000090663 1 2 2 80 17 46575240 46615685 CATACATCCGGATTGTGCT 58 46575178 46575196 TCAGTTCTATACTGCTGCG 57 NA Rattus norvegicus 81 Olr361 ENSRNOG00000053372 ENSRNOT00000088190 3 1 1 60 1 230160829 230160850 GAATGTCTCAGTTTACCTTGGA 58 230160865 230160889 GACCACATTAGACTTACAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304929 ENSRNOG00000022760 ENSRNOT00000039518 3 1 1 80 15 57089583 57089603 GCACTTTCTTACTGTCCTGTG 59 57089639 57090079 GGATTTCCCAAGTTCTAATATGACC 60 NA Rattus norvegicus 81 Fbxw4 ENSRNOG00000046211 ENSRNOT00000072223 1 1 1 80 1 265397046 265400921 GTGGAGATACAGTCAGATGC 58 265396985 265397004 TAGGCCAGGATGAAATTAGC 58 NA Rattus norvegicus 81 Bpifb2 ENSRNOG00000012197 ENSRNOT00000016431 3 1 1 80 3 149367536 149371738 CTTTAATCGGCCTCAGTCCT 60 149371781 149371799 AGTTACTGGTGATGGTGGG 59 NA Rattus norvegicus 81 Fgf8 ENSRNOG00000017524 ENSRNOT00000023558 2 1 1 107 1 265497713 265497731 GACCTACCAGCTCTACAGC 59 265494407 265497642 ACAATGAGCTTTGCGAAGG 59 NA Rattus norvegicus 81 Adora2a ENSRNOG00000001302 ENSRNOT00000001759 3 1 1 123 20 14266977 14273836 ATTCCACTCCGGTACAATGG 60 14266873 14266891 TCTGACTGCAGTTGTTCCA 59 NA Rattus norvegicus 81 LOC500028 ENSRNOG00000013438 ENSRNOT00000017955 2 1 1 80 17 49610678 49612134 CGAGTCCAAGAAGGTTACAG 58 49612174 49612195 TTTATAGCCTTGATTGAAGCCC 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076754,ENSRNOT00000075125 2 2 5 96 15 10281831 10281849 ATGACAGAAGAGAAGCTCG 57 10281316 10281773 CAAAGAGTACCATGGAATTGC 58 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326,ENSRNOT00000049654 2 2 2 87 9 71265560 71265578 GAAGAAGAGACTTCAGCCC 58 71265627 71269648 TAATGGCAATATACTGCCCAC 58 NA Rattus norvegicus 81 Peg12 ENSRNOG00000024429 ENSRNOT00000031973 2 1 1 60 1 123099687 123099706 CTCTTACTTTCGGGAAACCT 57 123099646 123099666 GTAGCCTTCGTGAATGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tac4 ENSRNOG00000004404 ENSRNOT00000035023 2 1 1 82 10 83087659 83088717 TTGTCCATCGAAGGAAGCT 59 83088763 83088781 CTCTGGAGGCTTTCTCTGG 60 NA Rattus norvegicus 81 Cluh ENSRNOG00000002669 ENSRNOT00000003687 1 1 1 80 10 61442649 61442816 TGACTTAGGAGACAGTGGGA 60 61442858 61442877 GGCAGGATATACTCAGGTGG 60 NA Rattus norvegicus 81 Olr765 ENSRNOG00000046942 ENSRNOT00000040298 1 1 1 60 3 102723547 102723566 GCTATGATTCCCATCTCCAC 58 102723589 102723607 TCAACGAATGAGAGGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Satl1 ENSRNOG00000022476 ENSRNOT00000037149 2 1 1 80 X 83773613 83774500 CACTGAAGATTATCAAGGTCTAGG 59 83772804 83772823 CTACATCCGGTGTTTATGGC 59 NA Rattus norvegicus 81 Gimap1 ENSRNOG00000042229 ENSRNOT00000059157 3 1 1 86 4 78371452 78373275 TTTCAGCAAGAAAGGGATGAG 59 78373322 78373341 CTCTCACCATCTTTCTTCCC 58 NA InUTR Rattus norvegicus 81 Mesdc1 ENSRNOG00000012349 ENSRNOT00000016455 3 1 1 60 1 146028484 146028502 CAGGCTTTAAGGGAAAGGT 57 146028442 146028463 TCACAGAATTGGAATTCACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6e ENSRNOG00000007091 ENSRNOT00000076364 1 1 1 60 7 116357064 116357082 TTGTTTGTGGCTGTTCGTG 60 116357106 116357124 TAGGAATGAAGGAGCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027457.1 ENSRNOG00000048067 ENSRNOT00000074220 1 1 1 80 17 31916120 31916517 TGGATTCCTGCTTCCAGAG 59 31916058 31916076 AGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 3 1 1 60 13 99099825 99101099 AGAAACCTCATCGTTACAGG 57 99099784 99099805 TTCTGATAGCGTCTGATTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 2 2 2 80 10 82137032 82137149 GAGACCTGGAGTGTGATGAG 60 82136971 82136991 GAAAGGCCATACCAAAGTTCC 60 NA Rattus norvegicus 81 Pom121l12 ENSRNOG00000050580 ENSRNOT00000074877 2 1 1 60 14 97686720 97686741 CTGTAAGAAGGAAACTGACCTC 59 97686761 97686780 CTCTGAGACAGCATTCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl7b ENSRNOG00000007927 ENSRNOT00000010760 3 1 1 62 7 3386019 3386037 AAGTCCTTCAGGAAGTCCA 58 3384595 3384613 CATGCTCCCAGAAGAACAG 58 NA DesignNoJunction Rattus norvegicus 81 Mylk3 ENSRNOG00000017546 ENSRNOT00000023657 1 1 1 80 19 27438281 27438300 GATACCTTCAAAGGGCTGTC 58 27438341 27439590 GCTCATCCTACAACTCTTCTC 58 NA Rattus norvegicus 81 Arhgef33 ENSRNOG00000007061 ENSRNOT00000061980 2 1 1 80 6 3076158 3076178 TAAGTCGGATATCTACACCCT 57 3076220 3079123 TTCAGAACATTCTGCAGGT 57 NA Rattus norvegicus 81 Cdc27 ENSRNOG00000005904 ENSRNOT00000007963 3 1 1 80 10 92585199 92585219 TGAAAGGACACAGTTGTACCA 60 92581394 92585157 CTTCTGCAAGCTTGCTGAG 60 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 1 2 2 80 4 179512406 179512424 GAGTGCCTTGACGATACAG 58 179500983 179512363 TGTTTCCTGTAGGAGTCCTC 59 NA Rattus norvegicus 81 Olr1275 ENSRNOG00000047973 ENSRNOT00000073449 2 1 1 60 8 42979156 42979174 CACGATCATCCTGATCCTG 58 42979114 42979133 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serp2 ENSRNOG00000038228 ENSRNOT00000058204 3 1 1 80 15 58694625 58705100 GTGGCTCAGACTTAAATCCC 58 58694564 58694583 CAGAATGTTCTGGCAGTCTC 59 NA Rattus norvegicus 81 Rn60_5_0814.15 ENSRNOG00000051164 ENSRNOT00000076437 2 1 1 87 5 77836233 77836252 GCGATGTTCTTCAGGAAAGG 59 77831715 77836183 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Ttpa ENSRNOG00000007139 ENSRNOT00000009611 3 1 1 80 5 34014433 34021105 TACCGAATTTCCTATTGGGAC 58 34021145 34021165 AATGAGCTCTGATGTGATCAG 58 NA Rattus norvegicus 81 Hspb3 ENSRNOG00000010992 ENSRNOT00000014627 1 1 1 60 2 45518002 45518022 TATCACGGAGTTTCACCAGAC 60 45517962 45517983 GACAAATCTTTGGTTTCGACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 3 2 2 80 8 97399102 97399122 ATCTCCCATATTATCCGCGAG 59 97399162 97404690 GTACTGAGTTACCTTTGGCTG 59 NA Rattus norvegicus 81 Epdr1 ENSRNOG00000060141 ENSRNOT00000085923 3 1 1 80 17 47419644 47420684 GCCAGATCCTATGAAACCTG 58 47420724 47420745 GTAGTTCCTAATGAAGGTCTCC 58 NA Rattus norvegicus 81 Hepacam2 ENSRNOG00000009711 ENSRNOT00000012995 1 1 1 80 4 28426196 28430179 ACAAGTCACTGTTGATGATCCT 60 28426137 28426155 TTGCCCACATACTCCACAG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000045691 1 1 5 99 2 192539016 192554055 AATTTGTGCTGTTGCCCAG 60 192554118 192554136 CTGGACAGTTTGGAGGAGG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000045691 2 1 5 100 2 192539015 192554054 AAATTTGTGCTGTTGCCCA 59 192554118 192554136 CTGGACAGTTTGGAGGAGG 60 NA Rattus norvegicus 81 Klk12 ENSRNOG00000034012 ENSRNOT00000024758 1 1 1 80 1 99706930 99708024 CAGTGGCAAGTACATGGTG 59 99708067 99708086 AAGGTGGTGAGTCTCAACTG 60 NA InUTR Rattus norvegicus 81 Rn60_5_0814.32 ENSRNOG00000051091 ENSRNOT00000076117 3 1 1 92 5 77311530 77312211 CTCGATGGGAAATCAAGATCC 59 77311458 77311477 CTGTTCTTATTCGCCCTCAC 59 NA Rattus norvegicus 81 Mas1 ENSRNOG00000014971 ENSRNOT00000020100 1 1 1 81 1 48094632 48103154 GTTGGTTCCAGGAGATGCT 60 48103195 48103217 GTATCATCAGTCAGTAACATGGG 59 NA InUTR Rattus norvegicus 81 Pdia5 ENSRNOG00000032327 ENSRNOT00000067984 1 1 1 80 11 68519274 68519294 ATCTCAAGCTACTGTCCACTG 60 68519336 68527015 TCTCTGCATCACCACAGTC 59 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501,ENSRNOT00000068410 1 2 2 80 4 22965497 22965516 ATGGCTTCCTTCAACTTCAG 58 22965558 22966480 CTCATTGCTACAAACTCCGT 58 NA Rattus norvegicus 81 RGD1308147 ENSRNOG00000015523 ENSRNOT00000020794 2 1 1 102 17 53084251 53087267 AGAACAAGATATGCCGTCC 57 53082503 53082521 ACAGAATCCACAGCATGTC 58 NA InUTR Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000081002,ENSRNOT00000017859 3 2 2 80 9 60985021 60986671 CTGAACAGATAACAGCTAATCTGG 59 60986707 60986728 TTGTCAGCTCAAGTTGTAATCC 59 NA Rattus norvegicus 81 Amdhd2 ENSRNOG00000006460 ENSRNOT00000008537 2 1 1 82 10 13530673 13530773 CATGTTGCCTTTCCACCAC 60 13530609 13530627 AGAAGATACAGTGGCCTGG 59 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 1 2 2 80 10 82387078 82388437 TCAGGAAAGATGATGCCAG 57 82387016 82387035 CACTTAGTCCCTGGAAACTC 58 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 3 2 2 81 13 44629153 44629171 AAATTTGCCGTCGAAAGGA 58 44629215 44629673 ATATCAGCAACGTCTCTTCC 58 NA Rattus norvegicus 81 Chgb ENSRNOG00000021269 ENSRNOT00000028892 3 1 1 93 3 125433417 125438868 CAAGTCCTGAGGAAGAGTGG 60 125438924 125438942 ATGGGTCTCTTAGCAACCG 60 NA Rattus norvegicus 81 Smc4 ENSRNOG00000010274 ENSRNOT00000013931 3 1 1 80 2 165621107 165622598 TTTGGATAAGATGGCAGTGTG 59 165622637 165622658 ACCAAATCAAATAACCGAGGAG 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037,ENSRNOT00000064331 2 2 2 80 17 55257564 55259387 AGGCTGAATAACAAAGTTGCTG 60 55257505 55257525 CAACTTCATCACCTCCTTGAC 59 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130,ENSRNOT00000082239 1 2 2 80 5 101587970 101587989 GATTTCAAACCTGGAGACCT 58 101584482 101587929 ATCAGGAACTTCATCTACTCG 57 NA Rattus norvegicus 81 Tagap ENSRNOG00000018915 ENSRNOT00000025580 2 1 1 81 1 47499543 47499561 GGAGGAGCTTAACTGTGGG 60 47499072 47499499 GAGGAAGTCCTTGAAGACCA 59 NA Rattus norvegicus 81 Rn60_6_1033.1 ENSRNOG00000032924 ENSRNOT00000046038 2 1 1 60 6 93790457 93790477 CTGAAGAAACACCGTGAAGAG 59 93790498 93790517 TCTGCAGACGTTCTATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359498 ENSRNOG00000038678 ENSRNOT00000059047 2 1 1 60 14 78741360 78741378 TGGTTCGTGCCAAATTCTG 59 78741402 78741420 ACACGGATTCTGTGTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc78 ENSRNOG00000022331 ENSRNOT00000020363 3 1 1 80 10 15156772 15156875 CGGTTGCAGATTTCTAAGGAG 59 15156917 15156935 AAAGACTTCAGCCTCATGC 58 NA Rattus norvegicus 81 Chmp2b ENSRNOG00000040257 ENSRNOT00000000904 1 1 1 80 11 2667169 2672498 AGAAATGATCAACGACACCC 58 2667108 2667127 ACTTGATTCACGATGTCCTG 58 NA Rattus norvegicus 81 Pth2r ENSRNOG00000015259 ENSRNOT00000021099 2 1 1 80 9 72153331 72155190 CCTTCCAGGGATTCTTCGT 59 72157273 72157292 GAGTCCAGGTCTTCTTCACC 60 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349,ENSRNOT00000081104 3 2 2 84 7 134475291 134480539 TCTTGCCATTGATACTGAAAGG 59 134475228 134475247 CAGATGTCATCAACAGGTCG 59 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 2 2 2 81 10 43542836 43542854 CCAGCAATCTTGAGGAGGA 59 43542899 43544548 GGAAACTCTGTGTCCATGG 58 NA Rattus norvegicus 81 Nox1 ENSRNOG00000048706 ENSRNOT00000075325 1 1 1 80 X 104921683 104921701 CTCCAGCCTATTCCATCCC 59 104921512 104921640 GCTGCATACATCACTGTCAC 59 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 3 2 2 81 16 20339611 20339630 CTGTTGGTCTTCAGCATCTC 59 20339670 20341735 CTTCCTGTTTATCATGGTACCTC 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000076518 2 1 3 87 14 47202206 47202224 TTCCAGTCTCTTCCCATGG 59 47201663 47202156 ATGACGATGACTCTCCTCTG 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454 2 1 3 81 14 47203107 47203268 CCATGGGAAATGCACTTAGTC 59 47203046 47203065 CTTTCTGGTCACTTTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454,ENSRNOT00000076657 1 2 3 60 14 47202698 47202716 CCACTGATGCAGAAGACGA 60 47202656 47202674 ACGACAGGTCCTCATACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5h ENSRNOG00000003626 ENSRNOT00000004836 1 1 1 80 10 103968767 103968788 TATAATGCTCTGAAGATCCCTG 57 103967729 103968728 GTTCTTCACATCCTCCTTCTC 58 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000083580 3 1 2 80 14 84237520 84237539 TCTTGTCACTGACTGCAGAG 60 84237582 84244978 TCTCAGGAAACCACTTGGG 59 NA InUTR Rattus norvegicus 81 Sytl2 ENSRNOG00000030776 ENSRNOT00000045048 2 1 1 80 1 154584350 154588082 TCAGACCCATATGTAAAGACCT 59 154588122 154588141 GGTCTTCTTCACTACAAGGG 58 NA Rattus norvegicus 81 Sytl2 ENSRNOG00000030776 ENSRNOT00000045048 3 1 1 80 1 154590167 154591626 CTGAAGAGGAAGACAGCAC 58 154591669 154591688 CTCCGGAACATATTGGAGAG 58 NA Rattus norvegicus 81 AABR07031918.1 ENSRNOG00000051569 ENSRNOT00000086651 2 1 1 87 18 39173118 39173139 GCTCTGAAATGCCTTATCAGTC 60 39173182 39209265 CCATGAATAACTGTATTTCCCTGG 60 NA Rattus norvegicus 81 Acsf2 ENSRNOG00000003330 ENSRNOT00000004673 1 1 1 80 10 82286299 82286476 TTCTGCAAAGGAAAGATTTCCC 60 82286240 82286258 TCCTGAGACAGTGAGAGGA 59 NA Rattus norvegicus 81 Idi1 ENSRNOG00000016690 ENSRNOT00000022389 1 1 1 81 17 57980734 57980752 AAATGATGCCATGGGTGTC 59 57978300 57980691 TAGATCAACCTCTTCCAAGGG 59 NA Rattus norvegicus 81 Hnrnpul2 ENSRNOG00000019507 ENSRNOT00000026416 2 1 1 80 1 225021069 225021087 ATGCTGTACCTGTTGAGGA 58 225021131 225021410 CCACCATCAGAATCACCTC 58 NA Rattus norvegicus 81 Fam154a ENSRNOG00000048197 ENSRNOT00000071318 3 1 1 85 5 104830149 104830167 AGTTGGCCTCATCAAACCT 59 104772392 104830106 CATAATCAACTTTGTAGGTAGGCAG 60 NA Rattus norvegicus 81 Adck1 ENSRNOG00000012685 ENSRNOT00000016962 2 1 1 80 6 111653734 111653753 GCTATGACTACCTCACCTCC 59 111653794 111709235 AATCATGGATCTGGGATCGAC 60 NA Rattus norvegicus 81 Kcnv1 ENSRNOG00000004117 ENSRNOT00000005556 3 1 1 80 7 84022781 84022800 CCTTTCTTCAGGAGATCCAG 57 84021913 84022741 TTCTTCTGAAGTATCTGTCCCT 58 NA Rattus norvegicus 81 Rabl3 ENSRNOG00000026085 ENSRNOT00000031741 3 1 1 84 11 66076542 66076560 ACTCGTCCATCTTCTGTGC 60 66066027 66076498 GTCATGAACTCTGATATCCACTG 59 NA Rattus norvegicus 81 Bcl2l13 ENSRNOG00000012394 ENSRNOT00000016561 3 1 1 82 4 153409494 153411553 TCTCTGAAGCCTTCACCAG 59 153411599 153411617 CTCTACGGAGCTTTCAGGG 60 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 1 4 4 80 5 116637615 116652349 CTAGTAAGAGTGTCACAAACACC 59 116652383 116652407 GTATGAGGAACTTTCCAAATCAGAG 60 NA Rattus norvegicus 81 Dhh ENSRNOG00000053675 ENSRNOT00000087327 1 1 1 102 7 140577249 140577267 AAGTATGGTTTGTTGGCGC 60 140576898 140577185 ATGAGTTATCAGCTTTGACCG 59 NA Rattus norvegicus 81 RGD1310587 ENSRNOG00000002322 ENSRNOT00000003177 1 1 1 60 13 102783264 102790320 AGAAGTACGGCAAGAATGTC 58 102783223 102783241 CCAATGACAATGTACCGGC 59 NA DesignRelaxed Rattus norvegicus 81 Tspan6 ENSRNOG00000003786 ENSRNOT00000005165 3 1 1 80 X 104725694 104725714 TCATTATTCTCTTGGGCACCT 59 104725311 104725655 GAAACATCGCATACAGTTTCAG 58 NA Rattus norvegicus 81 Kcnj4 ENSRNOG00000013869 ENSRNOT00000018564 1 1 1 135 7 120744049 120744067 TAGAGGTTTCAACCCTGCA 59 120719363 120719381 TTCTTCTTGACGAAGCGGT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lct ENSRNOG00000003681 ENSRNOT00000004908 2 1 1 80 13 45024025 45024999 CCTGGAAGCCATAAATAAAGAC 57 45023966 45023984 TCAGAATTGGACGTACAGC 58 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679,ENSRNOT00000072951 3 2 2 90 20 12658978 12658996 GAGGCTGAAACCTTATGGG 58 12659049 12660372 ACATCGGTAGTACCTGTCTC 58 NA Rattus norvegicus 81 LOC100360200 ENSRNOG00000025217 ENSRNOT00000038958 3 1 1 155 12 12188260 12188278 ACATCAAGTTCGACTTGGC 59 12188538 12188556 CACTAATGTGGCGGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Idi2 ENSRNOG00000046404 ENSRNOT00000045035 1 1 1 92 17 57702165 57702707 AGGACCAGATTTCCATAATGGA 59 57702094 57702112 AGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Il12rb1 ENSRNOG00000019216 ENSRNOT00000025977 3 1 1 81 16 20377469 20377926 CTATGGAAGGGCAGACACC 60 20377406 20377424 ACCAAGTGCTTCTTCACCT 59 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891,ENSRNOT00000020003 2 2 2 80 19 37204786 37206230 TCTTGCACAGATCCTCATCC 60 37206271 37206291 CAAAGATCATCCGCTGAAGAC 60 NA Rattus norvegicus 81 Kel ENSRNOG00000015682 ENSRNOT00000021485 1 1 1 80 4 70981810 70981828 CCTAAGCTGTGTACGATCC 57 70981604 70981766 GATTTCTGCCATCTGTGGT 58 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421,ENSRNOT00000061644,ENSRNOT00000083125 2 4 4 80 10 1414063 1416100 CCTAAAGTTGAGAGTGCGG 58 1414001 1414019 GTACGCATCATAACCTGCC 59 NA Rattus norvegicus 81 Rn60_5_0814.22 ENSRNOG00000051041 ENSRNOT00000076455 1 1 1 60 5 77655880 77655900 GAAAGGTAGGCAATACCAGAG 58 77655840 77655858 TGCATACTTATGGCCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ramp1 ENSRNOG00000019926 ENSRNOT00000027012 3 1 1 96 9 98334299 98363637 GACCATAGGGAGCTATGGG 59 98363696 98363715 GAAGAACTTGTCCACTTCCG 59 NA Rattus norvegicus 81 Birc5 ENSRNOG00000050819 ENSRNOT00000072387 2 1 1 81 10 106856690 106860784 ATGACAACCCTATAGAGGAGC 59 106860827 106860845 GTCAGTTCTTCCACCTGCT 60 NA Rattus norvegicus 81 Stk32a ENSRNOG00000027066 ENSRNOT00000031370 2 1 1 80 18 37630558 37630579 GAGGAATGTCTTCAAAGAACTC 57 37630619 37652665 TCTTGGAAGGAATACCACAG 57 NA Rattus norvegicus 81 Ccl7 ENSRNOG00000000239 ENSRNOT00000000256 2 1 1 85 10 69424042 69424413 GAAGCTGTTATCTTCAAGACCA 59 69424459 69424477 AAGTATGCTATGGCCTCCT 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000080481,ENSRNOT00000066419 1 3 8 60 13 68709858 68709877 ACCCTCATGGAGTTTCTCAC 60 68709899 68709918 AAGACTTCAACAGCTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564887 ENSRNOG00000025523 ENSRNOT00000054703 3 1 1 80 1 265682585 265682604 CACAAACTGCTGTGTTACCA 59 265653618 265682544 GTTTATCAAGGCTGACCAGAG 59 NA Rattus norvegicus 81 LOC100910698 ENSRNOG00000037698 ENSRNOT00000045591 2 1 1 80 X 105938368 105938387 CGTATGGAACACCTTAAGGA 57 105938427 105939356 TGGTAAGATTCTGAGAACTCTG 57 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761,ENSRNOT00000080533,ENSRNOT00000082876 1 4 4 80 3 112263894 112263913 GGAGCTTTGTGGACAAAGAC 60 112263951 112264720 CATCATATGACATCCAGAACTCTC 59 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066,ENSRNOT00000013851 2 2 2 97 1 157654846 157654864 CCTGTGAGGAATCCTTCCG 60 157654923 157659071 AATCTTGTTGCCCACTAACAC 59 NA Rattus norvegicus 81 Fasn ENSRNOG00000045636 ENSRNOT00000073321 1 1 1 80 10 110001552 110001572 TTAATTGGCTCCACCAAATCC 59 110000885 110001510 GGATAACAGCACCTTGGTC 58 NA Rattus norvegicus 81 Pex10 ENSRNOG00000024012 ENSRNOT00000036819 1 1 1 82 5 172472107 172473135 GGGATCACTTATCTCCGCA 59 172473181 172473199 GAGATGAGTCCCAGCAGTC 60 NA Rattus norvegicus 81 Olr25 ENSRNOG00000046609 ENSRNOT00000041243 2 1 1 60 1 150130249 150130268 CCCATGTACTTCTTCCTCAG 57 150130289 150130309 CAGTAACAGATACATAGCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867,ENSRNOT00000091150 2 2 2 80 1 214194948 214194968 CCTATAGAACAGGAAGACCAG 57 214195009 214196549 TGATGTCCTGGAAAGTTCTG 58 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 2 2 2 80 12 17551288 17551307 GTATCATCAGCAGGTTCCTC 58 17547979 17551246 TCAAGAGCTCAGGATAGACC 58 NA Rattus norvegicus 81 Olr1144 ENSRNOG00000030753 ENSRNOT00000040848 2 1 1 60 8 19772835 19772854 GAGGTACTTGGTCATCATGG 58 19772794 19772814 TAGCAGGGACAATAGAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 1 2 2 80 1 219363601 219364104 AGATGCTGAAGGTGGAGAG 59 219363539 219363558 GTACTGCCTTTGCTTTCTCC 59 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 2 2 2 80 8 97454812 97457079 GGTGTCTACTCCAGTAACTCC 59 97457120 97457139 CTGTTCTCCATAGCCAACAG 58 NA Rattus norvegicus 81 Ccl12 ENSRNOG00000029768 ENSRNOT00000031626 1 1 1 80 10 69476922 69476940 GATCTCCACCCTTCTTTGC 58 69476983 69477630 GTGAACACTGAATCTGGTCC 59 NA Rattus norvegicus 81 LOC680693 ENSRNOG00000036648 ENSRNOT00000068604 1 1 1 80 1 212316645 212316663 GACTTGCACAGCTACATCC 59 212315822 212316603 TCGAAAGACTTTCCTGTTGAG 58 NA Rattus norvegicus 81 LOC100910951 ENSRNOG00000046980 ENSRNOT00000044624 3 1 1 81 10 11376803 11376824 GTATCATATCTCTGGAAGGCCA 59 11376866 11384061 AAGTCAGTGACCAGGTCTG 59 NA Rattus norvegicus 81 Dpys ENSRNOG00000004298 ENSRNOT00000006004 2 1 1 80 7 78830218 78830236 CTCTATACATCGTGCACGT 57 78817164 78830176 CATAGACCACCTTTCCTTCTC 58 NA Rattus norvegicus 81 Ralyl ENSRNOG00000011400 ENSRNOT00000015195 3 1 1 82 2 89223402 89223420 AAGCCTGGAAGTAAGAGGC 59 89127472 89190923 TAATCAAACAGCCCAACAGAC 59 NA Rattus norvegicus 81 Steap2 ENSRNOG00000006076 ENSRNOT00000007977 3 1 1 80 4 25521820 25523179 TTATCAGCAGGTTCATGCG 58 25523222 25523241 CCGAAGGAGATGTACATCTC 57 NA Rattus norvegicus 81 Olr392 ENSRNOG00000018112 ENSRNOT00000024351 1 1 1 60 2 209581759 209581778 CTGACACCTATGTTCAACCC 58 209581718 209581737 AAGCTCCATGAATGTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp2 ENSRNOG00000007971 ENSRNOT00000010826 2 1 1 80 10 104634546 104634567 AACGACATGAAGAATGTACCAG 59 104633399 104634506 AAAGATGACCCGGTATGGAG 59 NA Rattus norvegicus 81 Btk ENSRNOG00000052407 ENSRNOT00000077547 3 1 1 80 X 105385947 105387870 ATTCTTCCACCAAAGATTCCAC 59 105385805 105385826 AATCTGTTCCATTTCACTGGAC 59 NA Rattus norvegicus 81 Hoxb2 ENSRNOG00000008365 ENSRNOT00000011213 3 1 1 84 10 84201256 84202015 GATCACCATCAGATGGTCC 57 84202063 84202081 AGTTGCGTGTTGGTATAGG 58 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846,ENSRNOT00000026665 1 2 2 80 1 166740074 166743091 TCTAACAAGGATGCAGCTC 57 166762622 166762640 TGCACCTTCTGATAACAGC 58 NA Rattus norvegicus 81 Commd10 ENSRNOG00000003958 ENSRNOT00000005260 2 1 1 80 18 41052477 41052495 CTCAGCTCAAGCAAAGCTG 60 41052538 41153354 TTCTCCAGGTTCTTGGAGTC 59 NA Rattus norvegicus 81 Pax1 ENSRNOG00000024882 ENSRNOT00000067983 3 1 1 89 3 141583524 141583919 ATATACCCAGTCGGCTTCC 59 141583972 141583990 CTGTATACTCCGTGCTGGT 59 NA Rattus norvegicus 81 Zfp113 ENSRNOG00000001341 ENSRNOT00000001815 2 1 1 80 12 19292373 19292391 CCTGACAAGGACAGTCTCG 60 19291845 19292331 CTCAAATGTCACCAACTCCTG 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076675,ENSRNOT00000076539,ENSRNOT00000076320 1 4 5 60 13 77942281 77942299 CCTCTGTCATCGTCAGGTC 60 77942323 77942341 CATCACGCAACATTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076539,ENSRNOT00000076320,ENSRNOT00000076016 3 4 5 60 13 77945177 77945195 GCTGGTGATGAAATTGCTG 58 77945216 77945237 ACCGATTTCTGATTCTAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxf1 ENSRNOG00000049906 ENSRNOT00000073858 1 1 1 86 19 53013298 53014615 GAATTGCAAGGCATCCCTC 59 53014665 53014683 GGCCATGGCATTGAAAGAG 60 NA Rattus norvegicus 81 Cntln ENSRNOG00000043151 ENSRNOT00000008757 1 1 1 80 5 103329936 103331492 CGATGCAGGAGAAGATGTC 58 103331533 103331554 TCTGTCGAAATTTCAAGTCCTC 59 NA Rattus norvegicus 81 Plp1 ENSRNOG00000002419 ENSRNOT00000003283 2 1 1 80 X 107508261 107508279 TTCCAAATGACCTTCCACC 58 107508323 107509229 AATCATGAAGGTGAGCAGG 58 NA Rattus norvegicus 81 Zmat1 ENSRNOG00000024135 ENSRNOT00000042714 1 1 1 80 X 105818205 105818224 CACAGTACTACTCCAGCACC 60 105810428 105818166 GTAGGTTCTCATTCTGTATGCTG 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240,ENSRNOT00000050535 1 3 3 125 11 71117903 71117921 TAACTCGTACTGCTGTGCC 60 71116664 71117814 TCAACGTCATCCCTGTCTG 59 NA Rattus norvegicus 81 Fut4 ENSRNOG00000009157 ENSRNOT00000012176 1 1 1 60 8 13261273 13261294 CATGTGGATGATTTCCCTAGTG 59 13261234 13261252 TTCGGTCCAGAAAGAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000061954 1 1 2 80 1 4498628 4498647 ATTTGCATTTCGGGCTATGG 59 4498021 4498587 TCTACCCATTCCGCTAAAGAG 59 NA Rattus norvegicus 81 Mrps18c ENSRNOG00000002178 ENSRNOT00000002962 3 1 1 95 14 10441248 10442167 ACATAACAGGTCTTTGTGGG 58 10441088 10441108 GATCCTTGTATGTAACTGGCA 58 NA Rattus norvegicus 81 Cpsf3 ENSRNOG00000052418 ENSRNOT00000091061 3 1 1 80 6 43384542 43384561 CCAAGCCATCCCATATACTG 58 43384601 43385457 TCTAATTCTTCTACATCACCCG 58 NA Rattus norvegicus 81 Zfp37 ENSRNOG00000046629 ENSRNOT00000018209 3 1 1 92 5 77293980 77294661 CTCGATGGGAAATCAAGATCC 59 77293908 77293927 CTGTTCTTATTCGCCCTCAC 59 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019,ENSRNOT00000081124 2 2 2 60 X 63290361 63291043 CGCCACATTGGATGTTACC 59 63290319 63290338 AGCTTGTCTGCTGATAACCT 59 NA DesignRelaxed Rattus norvegicus 81 Kars ENSRNOG00000019456 ENSRNOT00000046126 2 1 1 80 19 44220954 44220972 GGAGATGACACTCCTGTCC 59 44220817 44220912 CGATACCTTGTTTCCTTGTCC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000047303,ENSRNOT00000078816 2 3 3 80 8 48999572 49003766 CTACTATGTGGACAAACACGAG 59 48999513 48999533 AGGTGGTCATAGTACACTTCC 59 NA Rattus norvegicus 81 Jade1 ENSRNOG00000014066 ENSRNOT00000018872 1 1 1 80 2 128497337 128497355 CGGAGCTATGAAGCCTACC 60 128497399 128498387 CCAATGCTTACCTCAGGGA 59 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000000174,ENSRNOT00000088570 3 2 2 80 X 84767046 84767068 GCTATTCCTCTTAGTAGCAAGGA 60 84753692 84767009 ATCTTTGTGCAAATCCTGACTG 60 NA Rattus norvegicus 81 RGD1311318 ENSRNOG00000038008 ENSRNOT00000057820 1 1 1 81 2 150062662 150080692 CTCAACTGCTACAGAATGATCC 59 150080734 150080752 TCAAGTGACTGTAGGCCTG 59 NA Rattus norvegicus 81 Ngfrap1 ENSRNOG00000028822 ENSRNOT00000045997 2 1 1 79 X 106823953 106823971 ATTGAGAGGAGGACTACGC 59 106824417 106824435 CTTCCTGTCCATTCTGCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nxph3 ENSRNOG00000005185 ENSRNOT00000007133 2 1 1 121 10 83330079 83332682 TCTATCTGGTCATCTGCGG 59 83329976 83329997 CTTAGGTGAAATGTGACCTCTC 59 NA Rattus norvegicus 81 Nlrp1b ENSRNOG00000048125 ENSRNOT00000075185 2 1 1 60 10 57837163 57837182 ATCAGACAGATCCTGTCTCG 59 57837122 57837140 GCTCATCTATGCCATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 2 2 4 80 5 104739501 104740930 CTTTGGTGATCCAAGATTACTGG 60 104740968 104740988 GATGAACACCTCTGTTACCAC 59 NA Rattus norvegicus 81 Pdk4 ENSRNOG00000009565 ENSRNOT00000012760 1 1 1 80 4 30554168 30554188 CAGAGCCTGATGGATTTAGTG 59 30553390 30554127 CAGCGTGTCTACAAAGTCTG 59 NA Rattus norvegicus 81 Lyzl6 ENSRNOG00000003501 ENSRNOT00000004650 3 1 1 80 10 91697283 91697302 ATCAATAGCCGTTACTGGTG 58 91696180 91697243 ATTCAGTAGTTCTTCACAGTCC 58 NA Rattus norvegicus 81 LOC103691019 ENSRNOG00000053825 ENSRNOT00000090830 3 1 1 60 1 63201910 63201931 GTTCAACACATTCACAGGTCTC 60 63201952 63201970 GAGTGGCTCTGAACTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppil4 ENSRNOG00000015552 ENSRNOT00000021437 1 1 1 80 1 1905366 1906186 ACGAAGGAGCAATTAGATAGTG 58 1906225 1906245 TACTTCTTCAGCTGATCTTCC 57 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 1 2 2 80 3 148672476 148672497 ATCCTCAGCATGATTATCATCC 58 148672535 148674752 CATAGTGTCTTCAATGTCATCC 57 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079,ENSRNOT00000079698 3 2 2 81 10 17609905 17609929 CAGCATGGACATATTAACTCTTACC 60 17609967 17619532 GATCTAAGCCTTGCTCTGGT 60 NA Rattus norvegicus 81 Dao ENSRNOG00000054962 ENSRNOT00000077317 1 1 1 80 12 48357137 48357155 CTAAACAGCGTCCATGACC 59 48355305 48357096 CATGATTCTTGCATTCTTCAGG 58 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000009979 2 1 2 80 7 142875913 142875931 ACTGGAAACCCTGTATGGG 59 142875973 142876187 TCATACAGGGTTTGCTTAAGG 58 NA Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000024434 3 1 2 83 16 19996453 19996472 CTACAGAGGAGCAACAGGAC 60 19993310 19996408 CTCTCCTCAGGTCATCATGG 59 NA DesignNoJunction Rattus norvegicus 81 Spink13 ENSRNOG00000038793 ENSRNOT00000059276 1 1 1 68 18 57940847 57940866 ACAGGATCATCTTCTCCCTC 58 57936541 57940817 GTGATCTGATAAGTGCTGCT 58 NA DesignRelaxed Rattus norvegicus 81 Fam183b ENSRNOG00000002873 ENSRNOT00000003841 3 1 1 81 10 44736735 44740328 ACATCCCTTGATCAACCCA 59 44736672 44736692 AGCTTTGTACAGAGTGATGTC 58 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 3 2 2 80 14 11201125 11201144 ACATACACAGACGAAGAGCC 60 11201184 11201310 TTTGATTTCACACTTCCCAGAG 59 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718,ENSRNOT00000091144 3 2 2 80 5 99178281 99179099 AGAATTCCTCAGGTGCCTG 59 99179139 99179161 TAATCCAAGTCTGACTGTGAGAG 60 NA Rattus norvegicus 81 Zc4h2 ENSRNOG00000056735 ENSRNOT00000084107 1 1 1 80 X 64893911 64908521 AGAGATCAGGAACAAGACTCTG 59 64893852 64893870 TCTTCAGACTCCAGAGCCT 60 NA Rattus norvegicus 81 Olr1162 ENSRNOG00000047533 ENSRNOT00000049132 3 1 1 60 8 20054675 20054694 TGCAGACTCACAACAAATCC 59 20054717 20054735 ATGAAGAACGACACCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srl ENSRNOG00000005269 ENSRNOT00000048687 1 1 1 80 10 11278072 11281208 AGCAACAAGAAAGAGGTTACC 59 11281248 11281268 CAAAGACAACGAAGATGAGGT 59 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 3 2 2 91 3 111023736 111023754 AGATACTTCTGAGCCCGAG 58 111023463 111023681 AGTCTTGGAGAATGGCCTC 59 NA Rattus norvegicus 81 Ctsc ENSRNOG00000016496 ENSRNOT00000022342 3 1 1 80 1 151941437 151941456 AGTTTGCCAGAATCTTGGGA 60 151941497 151947728 TCCACAAGATTCTTGGTTTCG 59 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 1 2 2 80 17 54670697 54670718 TTACACCTTTGCATACAGAACC 59 54668773 54670657 TGTGTCACATGTCTTTGCTC 59 NA Rattus norvegicus 81 Olr237 ENSRNOG00000046456 ENSRNOT00000046903 1 1 1 60 1 172059058 172059079 TCCTTAAAGTCATCCTCTTCAC 58 172059019 172059037 TTTCCAGACACAGTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crlf1 ENSRNOG00000020030 ENSRNOT00000060097 2 1 1 99 16 20680063 20680081 ATGAAGGACCTGACATGCC 60 20679850 20680000 CCTGACCATACCACCTCAG 59 NA Rattus norvegicus 81 Gstt4 ENSRNOG00000038300 ENSRNOT00000058314 1 1 1 80 20 13783691 13784523 GAGATGATGCAGCCAATGG 59 13784567 13784585 TAACTCCACCCGCATTCTC 60 NA Rattus norvegicus 81 Tomm6 ENSRNOG00000046316 ENSRNOT00000070805 2 1 1 87 9 15313643 15314349 TTCCGGAGGAACTTGATCC 59 15314398 15314418 GTGCCATCAAATCAATGTCAC 59 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 2 1 1 95 8 67219142 67232101 CTTTCTGGCGTATCCAACC 59 67219065 67219087 GGAACACTCATTATGAGGTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Fam20c ENSRNOG00000001314 ENSRNOT00000001783 2 1 1 81 12 17929909 17929927 ACATGACCAAGGAGATCCG 59 17919018 17929864 CAGATGTTGTTGGCTGGAG 59 NA Rattus norvegicus 81 Rbm48 ENSRNOG00000008980 ENSRNOT00000012086 3 1 1 83 4 27702571 27702589 CCACAGTAGATCTGCAGGA 59 27702636 27707765 GCACAGATGAAGTCACCTC 58 NA Rattus norvegicus 81 Appl1 ENSRNOG00000013574 ENSRNOT00000018413 1 1 1 80 16 2586250 2586983 AACAAGTGTACAGAATGTGCG 60 2586190 2586213 GCTACTTCCAAGTCTTCTATTGTC 59 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000076383 3 1 2 60 12 11247418 11247439 TTTGTAACAGTGCTGTTCTGTC 60 11247460 11247478 ATGTCAATGAGCCCTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gucy1a2 ENSRNOG00000029876 ENSRNOT00000046058 1 1 1 80 8 776041 876315 GAAGACCCATTCAGATGCG 59 876357 876377 AATATCGTGGCATTCTCACTC 58 NA Rattus norvegicus 81 Myom3 ENSRNOG00000032994 ENSRNOT00000044969 2 1 1 80 5 154135853 154135872 CATCTACTCCCGAGAAGCAG 60 154135914 154137144 GGAACTGTGAACTTGGTGTC 59 NA Rattus norvegicus 81 Tas2r113 ENSRNOG00000030752 ENSRNOT00000050409 2 1 1 60 4 167088225 167088243 AAATGCTGTTCTTCCTGCT 58 167088183 167088203 CCACCTCAATCTACAGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim9 ENSRNOG00000007031 ENSRNOT00000009560 2 1 1 81 6 92666482 92666500 GCTTGGGCAATGTATGTGG 60 92663922 92666438 TGATCCCTCCTTCAGTTCTG 59 NA Rattus norvegicus 81 Dnajc21 ENSRNOG00000017876 ENSRNOT00000024218 2 1 1 80 2 60437319 60437337 AAGGAGTTTGGAGATGGGT 58 60433571 60437279 CTCACTGTCTTTACCATCTACTG 59 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000086944 2 1 2 84 1 173759386 173764107 AAGAGGACGTTCGTAGTTCC 60 173759321 173759339 TCAGGAGTGAAGCACTTCG 60 NA InUTR Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 1 2 2 80 9 79649557 79649575 ATCTGAAGCTGGAGATCGG 59 79649616 79652303 ATGTTCCACATACCATCATCTC 58 NA Rattus norvegicus 81 Igfbp2 ENSRNOG00000016957 ENSRNOT00000023068 2 1 1 80 9 80118474 80141484 GCAAGTTGCAGACAGTGAG 60 80141527 80141546 CCCAACATGTTCATGGTTCC 60 NA Rattus norvegicus 81 Ube2e2 ENSRNOG00000032690 ENSRNOT00000046879 2 1 1 88 15 7871556 7871576 AGGATCTGTCTATGAAGGAGG 58 7871626 7905720 TTCGGAAGGTGACCTTAGG 59 NA Rattus norvegicus 81 Trim58 ENSRNOG00000026430 ENSRNOT00000047700 1 1 1 80 10 44274009 44274028 GTGAAGAAGGAAATGGAGGA 57 44274071 44277223 CTCCACTTTCTCCTTCCAG 57 NA Rattus norvegicus 81 Olr16 ENSRNOG00000055974 ENSRNOT00000086084 1 1 1 60 1 149674589 149674607 GCCTCCAGCACTTAATCCT 60 149674547 149674568 CAGAGAACACTTGACCTTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441,ENSRNOT00000082652 2 2 2 80 X 112290942 112290962 ATGTGATGTCAACAATCCTCC 58 112291001 112296791 TTGGAAGGTTTGACTAAGACAG 58 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000051498 2 1 2 80 2 241466505 241471594 CTAACTGAGAGTCCCGGTG 59 241466443 241466462 CGACGCAAATTCAACTTCCA 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 3 4 4 81 3 3178964 3178984 AGGGTCATTGTCATTTGAGAC 58 3179026 3179646 GTCTTCTTGCCTTTGAAGGT 58 NA Rattus norvegicus 81 Napa ENSRNOG00000001494 ENSRNOT00000002044 3 1 1 80 1 78011304 78012170 CTACACAGAGTCGGTGAAGG 60 78012210 78012231 TTCTTGATTCGTAGAAGCATGG 59 NA Rattus norvegicus 81 Tuba1a ENSRNOG00000060728 ENSRNOT00000083156 2 1 1 80 7 140638959 140638977 TTCAGTGAGACAGGAGCTG 59 140638766 140638918 GCGAACTTCATCAATAACTGTG 58 NA Rattus norvegicus 81 AC095985.1 ENSRNOG00000053226 ENSRNOT00000091121 1 1 1 80 10 44421453 44421471 CAACATCACACTGGTCCAC 59 44421390 44421411 ATCATGTCGATACTGAGGAGG 59 NA Rattus norvegicus 81 Uri1 ENSRNOG00000014463 ENSRNOT00000019463 3 1 1 80 1 94349479 94350256 TCCTGCTGATATTTACAGAGTC 58 94349420 94349439 CTACGAGACTTCAGGATGGA 58 NA Rattus norvegicus 81 Rn60_14_0866.4 ENSRNOG00000030988 ENSRNOT00000050532 3 1 1 60 14 85902503 85902521 TCTCTTCCGATGACCAGAC 59 85902461 85902482 AGAGAACCTGATTTGTATCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fzd6 ENSRNOG00000004660 ENSRNOT00000006195 3 1 1 84 7 77928059 77929107 TGAAGGAAGGGTAAGTCCA 58 77929155 77929173 GTTTGGTTCTGGAGAGCTG 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 1 5 5 80 1 257517953 257544099 GATTTCTTCGCCAGAAACC 57 257544142 257544161 TAATTTCCATCCAGGAGCAC 58 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555,ENSRNOT00000014979 1 2 2 80 1 251201255 251203277 ACTACCAATTACCAAGCTGGA 59 251203318 251203337 CTCATAAAGCCTTTGAGCGG 59 NA Rattus norvegicus 81 Cnrip1 ENSRNOG00000005326 ENSRNOT00000007104 3 1 1 82 14 100217809 100217827 TACAATCAAGCTGCTCACC 58 100217873 100220707 TGGAAATGTTCTCGACCTG 58 NA Rattus norvegicus 81 Olr773 ENSRNOG00000048326 ENSRNOT00000071260 1 1 1 60 3 102948485 102948506 ACCCTGCATCTTTATCTATGTG 58 102948526 102948545 AGCAAGAAATTTGTCCAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jmjd4 ENSRNOG00000022438 ENSRNOT00000039012 3 1 1 82 10 45799532 45802188 CATCTGTGCAGAGACTCCT 59 45802232 45802252 TCATTCAGCCAATCTGATGAG 58 NA Rattus norvegicus 81 AABR07061152.1 ENSRNOG00000005867 ENSRNOT00000007700 3 1 1 81 4 106983164 106983182 AATTTCGGCCTAGATCCAG 57 106983074 106983121 CGATAATCTCTGTAAGAGCGA 57 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000089174 3 1 2 175 6 8887152 8887170 CCTACTTCTGGCGAGTAGC 60 8887310 8887329 GAACATGGACAACTCTTCCG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07007928.2 ENSRNOG00000059867 ENSRNOT00000087827 3 1 1 60 2 35435524 35435544 TGTACTTCTTCCTCAGCAGTC 60 35435484 35435507 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt7 ENSRNOG00000011976 ENSRNOT00000034012 2 1 1 82 19 46455888 46458655 GGAGTCTGTCAGAAACAATCTG 59 46458696 46458716 ACAAGTGGGAATATCTGGTCC 60 NA Rattus norvegicus 81 AABR07030122.1 ENSRNOG00000030217 ENSRNOT00000049614 1 1 1 60 10 68588878 68588896 TGAAGGTGTTTATGCCCGA 59 68588919 68588938 CACATAAGCACACCTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 3 2 2 80 X 65626843 65626864 CGACCATATTCTATACATGCCC 59 65626904 65644607 AAGTACTTCACCAGGCTCAG 60 NA Rattus norvegicus 81 Men1 ENSRNOG00000021054 ENSRNOT00000028592 1 1 1 80 1 221705332 221706191 CATCACAGGCACTAAACTGG 59 221706233 221706252 ACATCTCTGAGACCTAGAGC 58 NA Rattus norvegicus 81 LOC100911776 ENSRNOG00000048071 ENSRNOT00000074282 3 1 1 60 1 156327038 156327056 CTAGAACTGCTCAACTCGG 58 156326996 156327016 CCTTCATCTTCTCCATCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 1 2 2 80 11 14254241 14265430 CTGGATGAAGAAACTGCCG 59 14254179 14254201 CTGTGATTCACTCAAGATGTCTG 60 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 3 2 2 80 13 91732554 91735121 TTGAACGTGATGCAAGAGTG 59 91732493 91732513 GCATCTGATGTCAAAGGATCC 59 NA Rattus norvegicus 81 Rnf139 ENSRNOG00000008987 ENSRNOT00000011891 1 1 1 80 7 98770940 98770960 CAACTCCTACTACGATTCCAG 58 98771000 98779483 GATACAACTATACCGAGGAGC 58 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000075235 1 1 2 60 1 212872544 212872565 CCTGTCATTTATTCTCTGAGGA 57 212872583 212873292 AGACAAATAACTTTCTGAGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254,ENSRNOT00000022068 2 2 2 80 1 48298360 48298378 CTTCTCCCAGAGACCAAGG 59 48298422 48300441 GGCCTTTGATTTCCTCCTC 58 NA Rattus norvegicus 81 Nedd1 ENSRNOG00000004011 ENSRNOT00000005463 1 1 1 80 7 33554318 33554338 CTTCTCCAGCTTTGATGACAC 59 33551907 33554279 TTGTTGACTACAGCATCATCTC 59 NA Rattus norvegicus 81 Lypd5 ENSRNOG00000019432 ENSRNOT00000026288 1 1 1 105 1 81212615 81212633 TCACCCTGAAGACTGTTCC 59 81212702 81213082 CGAGAAGTTGCCAATGGTC 59 NA Rattus norvegicus 81 Scrt1 ENSRNOG00000025594 ENSRNOT00000035423 1 1 1 83 7 117586758 117586776 ATTCTCTTCGGCAGACCTC 59 117584767 117586715 CTGAGGTATCCTTTATCTTGCAG 59 NA Rattus norvegicus 81 Sh2d2a ENSRNOG00000013294 ENSRNOT00000017798 3 1 1 90 2 187220302 187220320 CATGGGTTCAGAAGACCCA 59 187220374 187220955 CTCTCAGCTTCCCTTCTGG 60 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 3 2 2 82 13 48648522 48648541 GAAACAGGATCTGGATAGCA 57 48648586 48649271 ACAGATCACTCTTGTTGGC 58 NA Rattus norvegicus 81 Tmem160 ENSRNOG00000015304 ENSRNOT00000020609 3 1 1 83 1 78419093 78419112 AAATGGACTTCTGGCATCAG 58 78419158 78420100 AGGAAGAAGCCATAGGCAG 59 NA Rattus norvegicus 81 Copz2 ENSRNOG00000009225 ENSRNOT00000055464 2 1 1 80 10 84724502 84725231 CATCTTAAGGAAGAACGTGGAG 59 84725270 84725290 TCAACAATTTCATCCAGCACC 60 NA Rattus norvegicus 81 Irf6 ENSRNOG00000005082 ENSRNOT00000007333 3 1 1 80 13 111885100 111885856 AACATTCCTGAGTGAGCTC 57 111885898 111885918 CCGAAGCATAAGTAAATCTCG 57 NA Rattus norvegicus 81 Tas2r123 ENSRNOG00000046088 ENSRNOT00000047402 2 1 1 60 4 167154467 167154487 TCTTAATCGCCAATTCATCCC 59 167154427 167154447 GGTATGAGCATGAAGAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 1 4 4 80 1 262914457 262914475 CAAGTACACATACCCTGCC 58 262914518 262914660 TTGTTCCTGTCCATCTTCTG 58 NA Rattus norvegicus 81 Actrt3 ENSRNOG00000027908 ENSRNOT00000030700 3 1 1 97 2 116416750 116417613 CTGTCCATCAGCTATCCAG 57 116417673 116417692 TTCAGGTTCAGGTTGTAGTC 57 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 2 3 3 80 18 59994486 59995704 CTTGTCAGATGACTTGTGTCAG 59 59994427 59994445 TTCAGTGTCCCGTATACCG 59 NA Rattus norvegicus 81 AABR07051244.1 ENSRNOG00000047422 ENSRNOT00000074437 3 1 1 82 3 2992947 2993479 CCAGGATGATTTCTCTGGG 57 2992883 2992901 TTCTCTTTGGGTTGTTCCC 58 NA Rattus norvegicus 81 Uts2 ENSRNOG00000018393 ENSRNOT00000024798 1 1 1 80 5 168082348 168083910 TTGAGGAAGGCTCTCACTG 59 168083953 168083972 TTGCTTACGTTGTTTCCTGG 59 NA Rattus norvegicus 81 Tns1 ENSRNOG00000014182 ENSRNOT00000035277 1 1 1 80 9 81196844 81196864 CTTCTTCAGACGACATTACCC 59 81196445 81196803 TCTGTCTTCATCCACTTCCT 58 NA Rattus norvegicus 81 Josd1 ENSRNOG00000014440 ENSRNOT00000019612 3 1 1 84 7 120908493 120908513 TGATGTGAATGTCATCATGGC 59 120908313 120908447 AATAACACCCACGTCCCTG 60 NA Rattus norvegicus 81 Wdr34 ENSRNOG00000015636 ENSRNOT00000021132 2 1 1 82 3 8599777 8599796 ACAAGTACCTGTTTGCTGTG 59 8599572 8599733 CAGTTGTACATCACCTTCCC 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000042594,ENSRNOT00000013026 3 3 3 85 6 107289429 107289448 ATCATTCCGTGTCACAACTG 59 107286875 107289381 CTGTCTCAGCTTTCTTGGC 59 NA Rattus norvegicus 81 RGD1308564 ENSRNOG00000043116 ENSRNOT00000065701 1 1 1 80 10 43728949 43728968 GTGGAAGAGCTGAAGAACAG 59 43729009 43730780 CTTGATCAGGTACTCCTTGGT 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 3 2 5 80 13 78782829 78782850 ACAATTACGGCTAGAATTGCAG 60 78782888 78784482 TTACTAACAGCCTCTAGTCCAC 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000076120,ENSRNOT00000003689 2 3 5 60 13 78760382 78760400 GTACAAAGACTGGAGCCAC 58 78760423 78760442 GAACAACATGTCCAATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000075838,ENSRNOT00000003689 3 3 5 99 13 78771701 78771719 AAAGCTAGACCACCTGAGC 59 78772321 78772341 CACCATCTGAATTGGTTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 1 3 3 80 5 169285361 169285379 GACGAAGGTCATCAGACCA 59 169285423 169285523 ATGAGGAGGAAGGAACCAG 58 NA Rattus norvegicus 81 Arhgap23 ENSRNOG00000022771 ENSRNOT00000034305 3 1 1 80 10 85411720 85411738 AGGACCTCAACGTGATCAG 59 85411779 85415883 TGTATTTGTCGTCAGTGAAGAG 59 NA Rattus norvegicus 81 Hist1h2ak ENSRNOG00000052594 ENSRNOT00000080119 1 1 1 158 17 44841141 44841159 AGAAGACGCGTATCATCCC 59 44841001 44841019 TAGCTTTGTGGTGGCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsx2 ENSRNOG00000011918 ENSRNOT00000015889 1 1 1 80 6 108292011 108292030 CCACTACCCAGATGTCTACG 59 108292073 108305431 TGGAACCACACCTGTATCC 59 NA Rattus norvegicus 81 Gnai1 ENSRNOG00000057096 ENSRNOT00000091004 1 1 1 80 4 13479435 13480986 ATGAAGAAATGAACCGGATGC 59 13481028 13481046 TGGATGTGTCCGTAAACCA 59 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 2 1 1 67 2 156792558 156807074 GTAAGTTCAGCTCCCAGAGG 60 156792510 156792528 AAGTCTCCCTGGGTAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Harbi1 ENSRNOG00000043204 ENSRNOT00000065462 1 1 1 81 3 80617050 80622649 TAGCTGGCTTCTTGGTGAC 60 80622694 80622712 CTCTGCTGGAGTTTCAGGA 59 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000071713 2 1 2 85 4 480609 480627 TTACTGGCTCTCACTCAGC 59 480541 480562 TAGAAGGCTGTGAAGAACTGG 60 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073,ENSRNOT00000071713 1 2 2 86 4 480760 482512 GACCTTTGAAATTCGCGTG 58 480692 480710 CTAGATGGTGTGCCTCCTG 60 NA DesignNoJunction Rattus norvegicus 81 Chrm4 ENSRNOG00000017556 ENSRNOT00000023583 1 1 1 96 3 80833394 80833412 GAGAAAGACAGAAGCAGCG 59 80838454 80838472 AGACTGATTGGCTGAGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Otud6a ENSRNOG00000042687 ENSRNOT00000029298 1 1 1 60 X 70256803 70256821 CAAGCTCATATCCAGACCC 57 70256845 70256863 GCTTTCGTCTTCCCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St8sia1 ENSRNOG00000014018 ENSRNOT00000018999 3 1 1 81 4 177106360 177114992 TTTGTCATGCGGTGTAACC 59 177106297 177106316 TAGCTGTCACCAACTGAGTC 60 NA Rattus norvegicus 81 RGD1311084 ENSRNOG00000018486 ENSRNOT00000024953 2 1 1 83 3 9630419 9630438 CTAAGAACCTTCCTGGACAC 58 9630046 9630373 AAAGGATTCCAGCTTCTGG 57 NA Rattus norvegicus 81 LOC691037 ENSRNOG00000038215 ENSRNOT00000058186 1 1 1 60 4 99168282 99168303 TCATTAGAAAGCAGAAAGCGAG 59 99168322 99168342 TCTGCCATCTTTCTGAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 2 2 3 80 13 77639577 77639595 GTGAATCTCGTAGCTGTCC 58 77639638 77640780 TTTGGGAGGATCAATTCCTG 58 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438,ENSRNOT00000056047 3 2 2 80 20 27293086 27293543 ACAATCTATGCCAAGGAAGGT 60 27293026 27293044 TGCATATGGAGCCATTCCT 59 NA Rattus norvegicus 81 Mttp ENSRNOG00000010655 ENSRNOT00000014631 1 1 1 80 2 243391185 243391940 GTGTCGAAGCAGAAATTGGA 59 243391124 243391143 AATTACTCCTGCCACTTGCT 60 NA Rattus norvegicus 81 Lrrd1 ENSRNOG00000026196 ENSRNOT00000032529 2 1 1 83 4 27404951 27405545 CCTGTAAAGACCACTACTCC 57 27404887 27404907 TGTGAATGATACCCTCTTCTC 57 NA Rattus norvegicus 81 Zfp652 ENSRNOG00000017001 ENSRNOT00000022811 3 1 1 85 10 83561159 83561491 GAAACACATGGTTGCACAC 58 83561540 83561558 CCTTGAGTGACATACTGCG 58 NA Rattus norvegicus 81 Arrdc2 ENSRNOG00000019009 ENSRNOT00000025956 3 1 1 134 16 20353232 20353394 CTTCCAGCTGCCTATCTCC 60 20353490 20353510 GGTTCAATGACAGTGAACACC 60 NA Rattus norvegicus 81 Hrasls ENSRNOG00000001711 ENSRNOT00000002329 2 1 1 80 11 75135393 75135411 TCCGTCCTTGTTATCAGCA 59 75132747 75135349 AGGGAATGCCATCTACAGG 59 NA Rattus norvegicus 81 Usp20 ENSRNOG00000007710 ENSRNOT00000010786 2 1 1 80 3 9850312 9850330 TTCAACACCTTTGCAGAGC 59 9850370 9850468 GTATTTATTGGGTGGGATACCTC 59 NA Rattus norvegicus 81 Nipal2 ENSRNOG00000005190 ENSRNOT00000006943 1 1 1 80 7 73449683 73449701 CGCAACTTCACATACTGGG 59 73417170 73449641 AAGGTGAATCTGGTTTCTGTG 59 NA Rattus norvegicus 81 Ncoa3 ENSRNOG00000005616 ENSRNOT00000007768 1 1 1 80 3 162785683 162786327 ATGCGACAAATTATGGAATGGG 60 162786367 162786386 ATGACATCATTGCACTGGGA 60 NA Rattus norvegicus 81 Dtx3l ENSRNOG00000023400 ENSRNOT00000039215 1 1 1 80 11 67762960 67763747 GAGATGGCATACAAACAAAGGA 59 67763785 67763806 TATCAGGCAAATATGCAACTCG 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489,ENSRNOT00000077952 1 2 2 80 1 81236141 81236160 TTTAATCACGCTGTCCACTG 59 81236203 81238041 TCAGTCATGAACAGCTGGA 59 NA Rattus norvegicus 81 Rtp2 ENSRNOG00000022160 ENSRNOT00000036777 3 1 1 80 11 80328485 80328504 AATCTCAAACCCAATGAGCT 58 80328547 80331098 CCAAGAACAGTGGAACCTG 58 NA Rattus norvegicus 81 Rn60_13_0801.3 ENSRNOG00000051352 ENSRNOT00000076569 3 1 1 60 13 75165430 75165450 ATCATTGACTATGCCAAGGAC 58 75165390 75165411 CTAGAATCGTGTAGGAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm2 ENSRNOG00000033522 ENSRNOT00000041175,ENSRNOT00000078237 2 2 2 80 5 161773890 161794870 AGGACTTCAGCTACAGTCTC 59 161773829 161773848 CCTTTCTGCATTGTCTGGTG 60 NA Rattus norvegicus 81 Cd52 ENSRNOG00000015403 ENSRNOT00000020688 2 1 1 186 5 152323318 152324362 TGGTCCAGATACAAACAGGA 58 152323151 152323169 ACATCGGTGATGGATGAGG 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 2 2 2 80 13 75187898 75192649 TACTATGGAAGGAAGAAGGAGG 59 75192689 75192708 CTTACTGGCTAGGAACAAGG 58 NA Rattus norvegicus 81 Cisd1 ENSRNOG00000000610 ENSRNOT00000000749 1 1 1 73 20 18501876 18501894 GATAAGGCCGTGTATTGCC 59 18506525 18506543 TTGTGCTTTATGTGAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Ergic3 ENSRNOG00000031085 ENSRNOT00000045484 1 1 1 80 3 151554371 151554391 CACAACCTGTTCAAGAAACGA 59 151554433 151555708 GACTTTCCCAAGCTCATGC 59 NA Rattus norvegicus 81 Slc17a8 ENSRNOG00000007581 ENSRNOT00000010207 1 1 1 80 7 30230671 30232235 TAAGTAAGGTGGGTCTCTTGTC 59 30230612 30230630 AATCAGCCAGTTGTCCTCC 60 NA Rattus norvegicus 81 Pcnxl3 ENSRNOG00000020742 ENSRNOT00000064136 1 1 1 80 1 221040472 221040490 GAAAGTGAGTTCCACACCC 58 221040288 221040428 GGCAGCAATTCTGAAACCT 59 NA Rattus norvegicus 81 Gtf3a ENSRNOG00000050016 ENSRNOT00000073026 3 1 1 80 12 9858586 9859042 AGCCCATAAAGAGGAGGTG 59 9858524 9858544 GTCTTCATGTGCTGCTTAAGG 60 NA Rattus norvegicus 81 Esrp2 ENSRNOG00000023177 ENSRNOT00000026873 1 1 1 80 19 38118210 38118228 AGAATTCCATGTGCAGCAC 59 38117846 38118166 TCTAGTCCCAAGTCCTGTG 58 NA Rattus norvegicus 81 Alkbh3 ENSRNOG00000021678 ENSRNOT00000030784 2 1 1 80 3 82891876 82897153 AATCCTCACTGGCTTCCTG 59 82891814 82891832 CAGCAAGGAGTTGAAGGTG 59 NA Rattus norvegicus 81 AC099444.1 ENSRNOG00000024617 ENSRNOT00000033807 2 1 1 102 4 78263896 78263914 TATGGTGGTCAGCCTTTGG 60 78264502 78264520 CACTTCCGGATGCAATCAC 59 NA DesignNoJunction Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 3 2 2 80 10 74096982 74097001 GTGAAGATTTGCTGCTTCCA 59 74089084 74096942 TCTGATACTCTGGATCAACAGG 59 NA Rattus norvegicus 81 Prpf40b ENSRNOG00000052539 ENSRNOT00000091306 3 1 1 80 7 140980701 140980814 AAGAAGACACAAGTCGACCA 59 140980855 140980875 TGTTCTCTGTCTTCACTCTCC 59 NA Rattus norvegicus 81 Ninl ENSRNOG00000027747 ENSRNOT00000068689 1 1 1 80 3 146734667 146735189 GGAGACCAAGGTAAATTACTATGAG 59 146734611 146734631 TGCTCCATCTCCTTCTTATCC 59 NA Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 2 2 2 80 15 18546076 18546334 CGAGAATTATGGAAGGCCCT 60 18546377 18546395 AAGGCATAGGGACATCAGC 60 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 3 2 2 80 5 173288636 173289543 TGCTTCTTCAGAGTTCTGCA 60 173289680 173289699 CAGACTCAGACACCACAGAG 60 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366,ENSRNOT00000088169 1 2 2 80 5 74114360 74116530 CATTCCACATTCAAAGCGAG 58 74111620 74111640 CTGGTAGTTATGGACTTCAGG 58 NA Rattus norvegicus 81 Dtl ENSRNOG00000004195 ENSRNOT00000005576 1 1 1 80 13 110250803 110250908 ACTTAAACTTGTTACAGCAGCC 60 110250744 110250763 TTGCATGTTCCCATTAGCTC 59 NA Rattus norvegicus 81 Nfkbib ENSRNOG00000020063 ENSRNOT00000027212 1 1 1 80 1 86941838 86941857 GATAAGCTTAGCCCTTGCAG 59 86941217 86941798 GATGTCATCATATTCATCGCCT 59 NA Rattus norvegicus 81 Pou6f1 ENSRNOG00000004595 ENSRNOT00000006095 3 1 1 114 7 142209315 142209901 AGGGACAGGTTATTGGAGC 59 142209219 142209237 GCATTCAACAAGAGCTGGG 60 NA Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 2 2 2 80 13 90820852 90822274 CTTACAGCTGGACAAGTTCC 59 90820791 90820809 AAGGCATCCTCATTTCCCA 59 NA Rattus norvegicus 81 Pgp ENSRNOG00000009536 ENSRNOT00000012720 2 1 1 176 10 13836676 13836694 ACATGAAGCTTACCAAGGC 58 13836926 13836944 TAGGCTTCCCGATGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 2 2 2 90 10 45313500 45313618 CTTGACCAGGAAGGAGAGC 60 45313671 45313690 TATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Ush1c ENSRNOG00000021149 ENSRNOT00000067392 1 1 1 80 1 102237901 102238029 CATCAAAGTGAGACACATCGG 59 102237673 102237692 AACTGATCCACATACTGCCA 59 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 3 2 2 82 17 58157700 58157718 CTTCCACCTCTACGTGAGC 60 58146372 58157654 TGCTGTTCAAGTCTGTGGT 60 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025952 1 1 3 80 5 173275824 173275845 GTAAACTGATCAAGAGGACACG 59 173275884 173276001 TCTCAAACTTGATCTGCTTCC 58 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 1 2 3 80 13 76550384 76554139 GAGTTGTATATGACAGGACCC 58 76550324 76550343 CCTTGTACACATACTGACGG 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000091981 1 2 4 99 20 2505245 2505263 ACTTCAGAAGTGCCTGGAG 59 2505325 2509751 TACCAGTCTCTTGAGTTCCC 59 NA Rattus norvegicus 81 Tmed10 ENSRNOG00000007901 ENSRNOT00000010512 1 1 1 80 6 109183839 109204788 CACCTCAAGATCACAGATTCTG 59 109183780 109183799 TGTGGTAAAGGCAAACTTCC 59 NA Rattus norvegicus 81 Cops3 ENSRNOG00000053943 ENSRNOT00000091471 1 1 1 80 10 46203067 46203085 TTGTCCCACTTGGACACTG 60 46199624 46203023 CTTCACAAACAGAACGGCA 59 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076194 3 1 2 88 12 29266760 29267954 CTTCATCCAGAATGGAGCCA 60 29268005 29268023 GGATTAGGTCGATACCGGC 60 NA Rattus norvegicus 81 Psapl1 ENSRNOG00000006845 ENSRNOT00000009193 3 1 1 60 14 79713950 79713970 TTTGGCATCGGTAATGAAGAC 59 79713910 79713929 GCACTTAGCTGAAGACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mief2 ENSRNOG00000028208 ENSRNOT00000023838 3 1 1 63 10 46972310 46972328 TTTCCAAGGCTTGGAAGCT 60 46972482 46972500 TGTGAGAACTCTGCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Txndc16 ENSRNOG00000006334 ENSRNOT00000008372 3 1 1 80 15 19541703 19541723 GAGTCCTCAGCAGTATTTCAG 58 19539806 19541664 TTACTTAGAGAACCATCTTGGC 58 NA Rattus norvegicus 81 LOC499565 ENSRNOG00000031320 ENSRNOT00000047881 2 1 1 80 2 87969485 87970268 GCAAGACAAACAATCCTTCTG 58 87970307 87970328 CATGAATTCATCAGATTCGCAG 58 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 2 2 2 69 5 155666654 155666672 GATCTGGAGAAGTGTGGCT 59 155666705 155666810 ATCCTGACCACTGGAAACC 59 NA DesignNoJunction Rattus norvegicus 81 Cxcl9 ENSRNOG00000022242 ENSRNOT00000003082 2 1 1 80 14 17230092 17232363 ACTGAAATCATCGCTACACTG 59 17232404 17232423 TTTCATCAGCTTCTTCACCC 58 NA Rattus norvegicus 81 RGD1561748 ENSRNOG00000028214 ENSRNOT00000030164 2 1 1 80 7 17859329 17859347 GCAAGTGGAAGAAACATGG 57 17853388 17859286 GGATACATAGACCATGGCAG 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 3 2 2 80 2 173472398 173475433 ACATCCACAGTTTCAGAAGAC 58 173472338 173472359 CTTCAAGACATCGGTATTACCA 58 NA Rattus norvegicus 81 Plekhm2 ENSRNOG00000012163 ENSRNOT00000016333 1 1 1 80 5 160196544 160197030 GTACTATGTCAGGAATGCCC 58 160196483 160196502 ATAAACTCCAACCCAGACAC 58 NA Rattus norvegicus 81 Slc46a1 ENSRNOG00000010291 ENSRNOT00000013698 1 1 1 80 10 65735828 65737448 CATGTTCACAGGGTACGGA 59 65737492 65737510 CTCACTAGCTTGGAGAGCT 59 NA Rattus norvegicus 81 Slc25a5 ENSRNOG00000039980 ENSRNOT00000015085 3 1 1 81 X 123406817 123406837 GCTGGCCTAACTTCTTATCCT 60 123406877 123407234 ACATGATATCAGTTCCTTTGCG 59 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000070893 2 1 2 80 15 2818477 2818501 GAAGTGCTAAATCCCTTCGAC 59 2818415 2818434 CTCCTCCACTTGGATCTCAC 60 NA Rattus norvegicus 81 RGD1561870 ENSRNOG00000042782 ENSRNOT00000067026 1 1 1 60 1 163814053 163814076 AATATCTTTAGAGACCCAGCTCTG 60 163814016 163814035 CAAACTTAACCTTGGCCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 3281a3 ENSRNOG00000056415 ENSRNOT00000085617 2 1 1 72 20 2297210 2297228 GGGAGGAGCAAAGATTCCA 59 2297156 2297175 TTACACCATCTCAGGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adh7 ENSRNOG00000032959 ENSRNOT00000015870 2 1 1 81 2 243512601 243512619 AGATGCTCAGCTATGACCC 59 243512664 243513361 TCTCTGCTCTTCCAACCAC 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015058 3 1 2 80 4 132157656 132160026 AGAGGAAGAAGGAGGTTCC 58 132157594 132157613 TCCTTAAACATGCCAAACCT 58 NA Rattus norvegicus 81 Sptssa ENSRNOG00000004292 ENSRNOT00000005825 1 1 1 80 6 75551470 75551490 GGTTCTACTACCAGTACTTGC 58 75541251 75551428 CCAGCATCGAATTGAACAC 57 NA Rattus norvegicus 81 Krt18 ENSRNOG00000047393 ENSRNOT00000073951 3 1 1 80 7 143632577 143632597 AACATCAAGGTCAAGCTTGAG 59 143632637 143632963 GTCGTTGAGACTGAAATCGTC 59 NA Rattus norvegicus 81 Cdkn3 ENSRNOG00000009785 ENSRNOT00000012985 1 1 1 80 15 23560374 23561882 AACCCTGATACACTGTTATGGA 59 23562801 23562824 ATTGAGTCAGACAAGTATAGGAGG 60 NA Rattus norvegicus 81 LOC685221 ENSRNOG00000027305 ENSRNOT00000038594 2 1 1 61 6 108831184 108831204 TTCCCATTGTGATGAAGAGTG 58 108832632 108832655 GTCATCAAATCCTAGAAGTGTACC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0722.3 ENSRNOG00000051057 ENSRNOT00000075839 1 1 1 60 X 71321623 71321643 AACAATAAAGGCCCTGTTGAG 59 71321661 71321683 GACCTCATTGGTTACATTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult1a1 ENSRNOG00000019342 ENSRNOT00000026186 2 1 1 82 1 198103243 198103261 GAGACAATTGGGCCATTGC 60 198103094 198103199 CAGGTAGTACCAGACTTTGGG 60 NA Rattus norvegicus 81 Miip ENSRNOG00000024139 ENSRNOT00000035695 1 1 1 80 5 164674004 164674137 GTACAAGTCAGGGTGAGCA 59 164673942 164673962 ATCAAAGCTCTTCCTTCTGTG 58 NA Rattus norvegicus 81 Rpl26-ps2 ENSRNOG00000039783 ENSRNOT00000061041 1 1 1 60 1 31527915 31527933 AAGGACGACGAAGTTCAGG 60 31527873 31527891 CCACTTTGCCAATCTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1637 ENSRNOG00000025640 ENSRNOT00000034647 1 1 1 60 15 27997174 27997194 CCTTTCTTGTCATTGTCTCCT 58 27997134 27997154 AGGACTATGAAGCCATAAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sync ENSRNOG00000008118 ENSRNOT00000010730 1 1 1 88 5 147483421 147495537 CTACAGTACAGGGAGCAGC 60 147495589 147495607 TCCTTGTTCTTCTGCTGCT 59 NA Rattus norvegicus 81 LOC100911839 ENSRNOG00000047136 ENSRNOT00000074866 1 1 1 60 1 171162393 171162412 CTATCAAGGGCAGAACACAG 58 171162352 171162370 CACTTTCAGGAGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 1 2 2 80 8 70624061 70624522 CCATAAAGAGCAACGGGAG 58 70624566 70624584 AATCGGAGTGGACAATGAC 58 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 3 1 1 75 7 34093431 34102293 CTTTCTTCAGTGCACAGACG 60 34093375 34093394 CTCCAGAAATGTATGCTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Dhdh ENSRNOG00000020883 ENSRNOT00000028334 1 1 1 80 1 101472117 101474806 CTTATGGAGGCCATTTGGA 57 101472055 101472073 GTCTCCGATAGTTCCTTGG 57 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181,ENSRNOT00000090680 1 2 2 80 3 112693805 112693825 CTGCAAGTCAGTTCATCACAG 60 112691062 112693765 GAATTGTAATCGCAGTCAGGG 60 NA Rattus norvegicus 81 LOC685793 ENSRNOG00000030145 ENSRNOT00000041610 1 1 1 60 1 55220269 55220287 TAATGGAGCTGGTGGAAGG 59 55220311 55220329 TCTATGTGCCCTGACTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc127 ENSRNOG00000012775 ENSRNOT00000017779 1 1 1 95 1 31540241 31543447 AGCGTTTCGTTGGATTTGG 60 31540164 31540182 AGATCCTGCTGGAAAGCAG 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000040153 ENSRNOT00000061786 1 1 1 80 6 108746049 108747550 TCGTTCTCATTTACGATCCC 58 108747591 108747611 CCATCAGTTTAGGAGTCAGTC 58 NA Rattus norvegicus 81 Car12 ENSRNOG00000017766 ENSRNOT00000023952 2 1 1 80 8 72448125 72448143 AAGTTTGATGAGAGGCTGG 57 72457193 72458019 AAGGATGATACCCAAACTCAG 58 NA Rattus norvegicus 81 Olr416 ENSRNOG00000029069 ENSRNOT00000049651 1 1 1 60 3 20914211 20914230 GTCACCCTCTCCACTATTCC 59 20914170 20914190 AGGATAAGCATCAGGACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912127 ENSRNOG00000050448 ENSRNOT00000074489 2 1 1 60 4 1558428 1558447 TTTACACCAATGTGGTTCCC 58 1558468 1558488 ACATCTTTGTTCCTCAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 3 2 2 80 4 155334277 155335887 CGAGGCCATGAAAGATGAG 58 155335931 155335949 AGTCGGAAGTAGTTGGAGC 59 NA Rattus norvegicus 81 Tgm6 ENSRNOG00000006830 ENSRNOT00000009097 2 1 1 80 3 122663761 122663779 AGTGGCATCATCTTCCGAG 60 122663821 122665275 CAGGATGTCCTCTTCAAACTG 59 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 3 2 2 80 9 81852156 81854181 TGTTGCTTCATACTGGAGAG 57 81852095 81852114 GCTTGGATAGGTAGCTAACG 58 NA Rattus norvegicus 81 LOC689701 ENSRNOG00000046189 ENSRNOT00000044669 1 1 1 80 8 44664782 44666220 TGAAGACTGGGATGTGTCTG 60 44666259 44666281 CTGAATCCTGCAATACATGTCTC 60 NA Rattus norvegicus 81 Lzic ENSRNOG00000016200 ENSRNOT00000021822 3 1 1 83 5 166437464 166437482 GAAGCTGGAAAGAGACCTG 58 166437529 166437926 TCATCTGTCAGCTTCTCCC 59 NA Rattus norvegicus 81 Ecm1 ENSRNOG00000021166 ENSRNOT00000028740 1 1 1 80 2 197856152 197856171 GATCCAGAACATGACTGTCC 58 197855781 197856109 AAAGCCAGTTTCTCCTCCT 59 NA Rattus norvegicus 81 LOC683674 ENSRNOG00000024567 ENSRNOT00000039191 1 1 1 81 12 13302907 13302925 ATCTTTAGTGCCAGCCCTC 60 13302969 13306890 TGAGGTCATCTGATGACAGG 59 NA Rattus norvegicus 81 Bcl9l ENSRNOG00000012420 ENSRNOT00000064041 2 1 1 85 8 48832365 48832383 CCTCAGATGACGAGTTGCT 60 48832432 48832654 GTTGTTGCTGATACCTGGC 59 NA Rattus norvegicus 81 Bcl9l ENSRNOG00000012420 ENSRNOT00000064041 3 1 1 85 8 48832366 48832384 CTCAGATGACGAGTTGCTG 58 48832433 48832655 GGTTGTTGCTGATACCTGG 59 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 2 2 2 80 6 110646940 110646959 TAGGTCTTGGGATGACAGTG 59 110646199 110646898 CCAACCTGTGATCACTTCTG 59 NA Rattus norvegicus 81 Mtbp ENSRNOG00000004412 ENSRNOT00000005887 3 1 1 80 7 95357760 95363193 GGCATGGTAAATGATGCCAG 60 95363235 95363254 TCTTTCTGGCCATTCCAGAG 60 NA Rattus norvegicus 81 Wnt5a ENSRNOG00000015618 ENSRNOT00000021164 2 1 1 80 16 4475504 4475522 CTTCCTAATGGCTTTGGCC 59 4475565 4476770 TTCATACCTAGGGACCACCA 60 NA Rattus norvegicus 81 Ccdc68 ENSRNOG00000021381 ENSRNOT00000039702 3 1 1 80 18 68422520 68422538 AAGACCGCTCCATCTTCAG 60 68422579 68423735 GGGTAGTTCGAATCTTTCTCAC 59 NA Rattus norvegicus 81 LOC100361879 ENSRNOG00000045749 ENSRNOT00000071297 3 1 1 62 14 83220304 83220322 CGGTTCTCCCAGATCTGTG 60 83220348 83220366 GTTCGCTTTGAACTCGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Whamm ENSRNOG00000028113 ENSRNOT00000064667 3 1 1 80 1 143408557 143408575 CTGAAGAAGCAGTGGTCTC 58 143408618 143417980 TCTGCATTCCTGTTAATGCT 58 NA Rattus norvegicus 81 Rmi2 ENSRNOG00000021902 ENSRNOT00000033122 1 1 1 88 10 4905348 4910012 GTTCCCAGGAAAGTACGTG 58 4905278 4905296 AAAGGTCCGTCATCTTCAC 58 NA Rattus norvegicus 81 Rspo3 ENSRNOG00000011568 ENSRNOT00000015395 1 1 1 80 1 30713333 30713351 AAAGTGCCTTGACAGTTGC 59 30713393 30718310 GCCTCACAGTGTACAATACTG 59 NA Rattus norvegicus 81 Mrpl20 ENSRNOG00000018647 ENSRNOT00000025213 2 1 1 84 5 173250810 173252432 TAGTTAAGTGCCAGGTGGAG 59 173252477 173252497 GCAGCCAAAGATTTAAACGTC 59 NA Rattus norvegicus 81 Naaa ENSRNOG00000002273 ENSRNOT00000003102 2 1 1 81 14 17284444 17284464 ATGTGACTACCTCAACCTCAG 59 17284507 17288263 AATACTGGTGCAGAATGCG 59 NA Rattus norvegicus 81 Tnfrsf18 ENSRNOG00000022012 ENSRNOT00000038747 3 1 1 82 5 173461683 173461701 CCACTGTGAAGACCCTCAG 60 173461743 173462295 TAATATTCCCTTGAGACTCCACC 60 NA Rattus norvegicus 81 Btbd17 ENSRNOG00000003109 ENSRNOT00000004191 2 1 1 90 10 103336240 103337504 GTTCATCAGGTATTTGTACTGTGG 60 103336173 103336192 TGCTACTCGGTATTTGGTGG 60 NA Rattus norvegicus 81 Hspb7 ENSRNOG00000029079 ENSRNOT00000051317 3 1 1 63 5 159968940 159968958 CAACAACCACATCGAGGTG 59 159970207 159970226 AAAGGTGTTCATGACTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Atg101 ENSRNOG00000007756 ENSRNOT00000010194 1 1 1 80 7 142932873 142932893 GACTTCACATATGTGCGTGTC 60 142932934 142937889 CAGTGCATCCTTGAATTCCC 59 NA Rattus norvegicus 81 Nudt16l1 ENSRNOG00000003224 ENSRNOT00000004314 3 1 1 98 10 10831532 10831632 GCGTTTCTCAGTACTGATGC 59 10831453 10831471 TTCAAGCCATCCTCCAGTG 60 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000053884 ENSRNOT00000071568 1 1 1 182 4 82299917 82299935 CAACTTCAAGTTCGGACGG 59 82298343 82298361 ATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Olr252 ENSRNOG00000036787 ENSRNOT00000055174 3 1 1 60 1 172395556 172395578 GGATGTTCTATACAGTTTGGCTC 59 172395518 172395538 CCAGAAGGAAGCATTCAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 3 2 2 80 1 191917418 191917436 CCAAATTCACCAATGGCCT 59 191911843 191917376 TGAAGTGAGACACATACTTGG 58 NA Rattus norvegicus 81 AC097129.1 ENSRNOG00000031408 ENSRNOT00000048768 1 1 1 93 4 119583582 119587501 ACTGTCCAGGATCCATGAC 59 119583507 119583527 GTCTTTAATCATGCAGGAGGA 58 NA Rattus norvegicus 81 Olr604 ENSRNOG00000005880 ENSRNOT00000007712 1 1 1 60 3 76135397 76135418 GATTACCCTGAATTGAAAGTCC 57 76135358 76135379 CAATGATGCTGTAGATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp3 ENSRNOG00000012865 ENSRNOT00000017224 2 1 1 80 8 115176187 115176358 AGTACAAGGCCATACAGACC 59 115176126 115176145 TCACTTTCCAAACATGCTGC 60 NA Rattus norvegicus 81 Fam126b ENSRNOG00000025079 ENSRNOT00000037660 1 1 1 80 9 65436603 65441478 AAGACTCAAACAATGAGCTCC 59 65436543 65436563 TCTTAAGTCGAACCTCAGAGC 60 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274,ENSRNOT00000050188 3 2 2 80 5 173076752 173076894 GGTGCTAAGGAATACTCCAC 58 173076937 173076955 CAGAGGTTTCTGTGTCAGC 59 NA Rattus norvegicus 81 Snip1 ENSRNOG00000024889 ENSRNOT00000037510 3 1 1 81 5 143064751 143067953 CAAAGTGAAGCAGGAACGG 60 143067996 143068016 GTGCTCCTGTTCTGATAACTC 59 NA Rattus norvegicus 81 Abtb1 ENSRNOG00000015762 ENSRNOT00000021445 2 1 1 80 4 120779455 120781058 AGTGACCATACTGAGCTACC 59 120779394 120779412 CTTCAGGCCAGGTAGAAGG 60 NA Rattus norvegicus 81 Pomt2 ENSRNOG00000012146 ENSRNOT00000016242 1 1 1 80 6 111147486 111150599 CTAGAACACAAAGAAACTACTCGG 60 111147429 111147448 AGTGACCTGATAGTGCTTCC 59 NA Rattus norvegicus 81 Cxcl13 ENSRNOG00000024899 ENSRNOT00000039383 3 1 1 84 14 15254244 15254265 AAGGCCAAGAAAGCTATATGTG 59 15253930 15254202 AAGTAATACTTCTGCTTCGGAC 58 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 2 2 2 80 19 52240451 52240469 AGTGGAAGATGCAGACCTG 59 52240512 52242700 GGAGATGTGACCTCTTCAGG 60 NA Rattus norvegicus 81 Il23a ENSRNOG00000003254 ENSRNOT00000004363 2 1 1 82 7 2712023 2712264 GGGACAAATGGATCTACTAAGAG 58 2711963 2711981 CACAACCATCACCACACTG 59 NA Rattus norvegicus 81 Olr429 ENSRNOG00000025721 ENSRNOT00000036382 2 1 1 60 3 21292533 21292553 GGACCCAATGTCATTCATCAC 59 21292575 21292593 AGCAGGAGAGTGTCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r38 ENSRNOG00000038644 ENSRNOT00000058997 3 1 1 60 1 72230379 72230401 CTATCAGTTTGTCATGCTTCTCC 60 72230419 72230439 GGCTCTTCCTTTGAGTATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc25 ENSRNOG00000022565 ENSRNOT00000031692 1 1 1 60 16 20561614 20561633 CGAGGATTGTTCATGGTCTG 59 20559741 20559761 CATGTAGCAGTCATTGTCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_1641.1 ENSRNOG00000051225 ENSRNOT00000076898 1 1 1 60 5 160288736 160288755 TCTATGTCAAGCAGCATCAC 58 160288778 160288796 CGTGAGATGGATTCTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxb5 ENSRNOG00000008010 ENSRNOT00000010724 1 1 1 83 10 84152824 84153517 TCAGCCACGATATGACTGG 59 84153564 84153582 ATTCCTTCTCCAGCTCCAG 59 NA Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 1 2 2 80 17 78775619 78775641 GACTATGAGTCTGATGAGTTCAC 59 78775679 78778108 TGGGTCACAACTATGATTCAC 58 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 1 2 2 80 9 67699615 67702707 TCTCTGAAGCCATACAAGTG 57 67702748 67702768 CATATTCACATGGAAAGCTGG 57 NA Rattus norvegicus 81 Abi2 ENSRNOG00000017707 ENSRNOT00000050179 3 1 1 80 9 67282019 67282039 GATGATGGTTGGTATGAGGGA 59 67282078 67282101 GAATAATGCATGATGCTCAACG 59 NA Rattus norvegicus 81 RGD1562755 ENSRNOG00000028963 ENSRNOT00000051559 2 1 1 60 14 58878131 58878150 AACAGGCCGTAAAGAAACTC 59 58878172 58878191 GGCTGTATCAGGGTATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC113925.2 ENSRNOG00000061299 ENSRNOT00000090745 2 1 1 139 1 168957928 168958585 GAGAACTTCAGGCTCCTGG 60 168958687 168958706 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171,ENSRNOT00000016341 2 2 2 80 3 11328338 11328359 GTCTGAGAAGGCAGAATTACAG 59 11328400 11328510 AGATCCTCCGACTCTCCTG 60 NA Rattus norvegicus 81 Hoxb4 ENSRNOG00000008191 ENSRNOT00000010965 3 1 1 60 10 84167562 84167583 ATCAACTCAAACTATGTCGACC 59 84167603 84167622 AATCGCTCTGTGAATACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osr2 ENSRNOG00000011136 ENSRNOT00000014879 3 1 1 85 7 74053588 74053607 CTTCAAATGTCAGGAGTGCG 60 74053655 74054464 GGCTTGATGTCTGCATGTG 60 NA Rattus norvegicus 81 Mex3c ENSRNOG00000015777 ENSRNOT00000041227 3 1 1 62 18 69550125 69550143 CATGTCGCTGAGATTGTCG 59 69568755 69568774 GTTTGTCTTGGCTCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pinlyp ENSRNOG00000019862 ENSRNOT00000026946 1 1 1 95 1 81406857 81407123 GCAGGCTGGTATTATCAACAC 60 81406782 81406800 GAAGCAGAAGGGACCTCAG 60 NA Rattus norvegicus 81 Qsox2 ENSRNOG00000018574 ENSRNOT00000061735 1 1 1 80 3 3676148 3676167 CTTGGCATTTCGTCAGTTCC 60 3675087 3676108 TAGAGGCTTTGCAACATTAACC 59 NA Rattus norvegicus 81 Rps6ka4 ENSRNOG00000021117 ENSRNOT00000028678 2 1 1 80 1 222095862 222095884 TCTTACTTGACTCTGAAGGTCAC 60 222095586 222095823 TTCGCTCTTTCTCCTCAGTC 60 NA Rattus norvegicus 81 Rps6ka4 ENSRNOG00000021117 ENSRNOT00000028678 3 1 1 80 1 222095862 222095883 CTTACTTGACTCTGAAGGTCAC 59 222095585 222095821 GTTCGCTCTTTCTCCTCAG 58 NA Rattus norvegicus 81 Fam188a ENSRNOG00000016955 ENSRNOT00000022986 2 1 1 80 17 79729843 79740153 CCCAGAAGATAATGGATTCATAGC 59 79729786 79729806 TACTCGGGATCTGAAACAAGG 60 NA Rattus norvegicus 81 Cxcl10 ENSRNOG00000022256 ENSRNOT00000003075 3 1 1 81 14 17211493 17211706 CATGTTGAGATCATTGCCAC 58 17211750 17211768 ATAAGCTCTTGATGGCCTC 57 NA Rattus norvegicus 81 Lacc1 ENSRNOG00000022094 ENSRNOT00000032301 3 1 1 80 15 59214608 59215206 TTGATCCCAGACATCTTCCTG 60 59214548 59214567 ATTGAGTGAGCTGAGAGTGG 60 NA Rattus norvegicus 81 Ddhd1 ENSRNOG00000009481 ENSRNOT00000032704 2 1 1 80 15 19981023 19985352 ACAGGGATGAGCTAGTTAAAGG 60 19980964 19980982 CAAAGTCTGGATTCCGGGA 59 NA Rattus norvegicus 81 Ifngr1 ENSRNOG00000012074 ENSRNOT00000016286 2 1 1 80 1 15074398 15074419 GGAAATACCTGTTACACATTCG 58 15074455 15076895 GCTATGTTCTGTATGTAGGATCTC 59 NA Rattus norvegicus 81 Bbs9 ENSRNOG00000015189 ENSRNOT00000020481 2 1 1 80 8 23782364 23786984 GACTAGTTGTGGACTGGACTC 60 23787023 23787044 AAGATGCTGACTGGTTTAAAGG 59 NA Rattus norvegicus 81 Olr69 ENSRNOG00000015657 ENSRNOT00000020969 2 1 1 60 1 168143753 168143774 CCACCAAGAAGTGATGAAACTG 60 168143714 168143735 CATACCATAAATGCTGTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000064310 2 1 2 80 5 159735505 159735697 CGTGAGTTTGCTAATTCTGC 58 159735740 159735758 CATCTCTGGTGACAGTTGC 59 NA Rattus norvegicus 81 Vom1r98 ENSRNOG00000052138 ENSRNOT00000086882 1 1 1 60 4 121913022 121913042 AACTTTCTCCAAAGGCAACTC 59 121913059 121913082 CTCATAAACATTAGAAGGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911427 ENSRNOG00000048437 ENSRNOT00000071906 3 1 1 83 9 88748581 88748599 AGAGTATGCACACTGGCTG 60 88747957 88748536 ATTGGGTGAGCTATCACTCTG 60 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725,ENSRNOT00000031946,ENSRNOT00000059545 1 3 3 83 7 27262947 27267179 CATTCTCAGAATCAATTCCCTTCC 60 27267221 27267239 ATCAGAGTGGACTTTCCGC 60 NA Rattus norvegicus 81 Tbc1d9b ENSRNOG00000003050 ENSRNOT00000043085 2 1 1 80 10 35654833 35654852 TAACTACATCTGCTTTGCCA 57 35654894 35656376 TTCTCAACAATGGTCACCTC 58 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000024981,ENSRNOT00000025013 2 2 2 80 19 29732977 29743764 CCTCACCTGAAAGATGCTC 58 29732915 29732933 ACCACCATTCTTGAATCCC 57 NA Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000071569 3 1 2 188 12 24651512 24652963 CAGGAAGTTCCAGGGTCTG 60 24653114 24655204 ATGCTCTTCTCCAGTCTCTG 59 NA Rattus norvegicus 81 Olr267 ENSRNOG00000049197 ENSRNOT00000075297 3 1 1 60 1 172729123 172729144 TGTTGAACCCTCTCATCTACAG 60 172729165 172729183 TGTTTCTTCAGAGCACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myot ENSRNOG00000050004 ENSRNOT00000016511 2 1 1 80 9 37731300 37731321 TTCTATATTACCGTCTCAGCCT 58 37731359 37735372 ACTGAGGATTGTTGATAGTTGG 58 NA Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 1 1 1 60 15 19196491 19197508 TGTTCCCTGCCTTTAATTGTC 59 19197914 19197933 TATTCTCACTGAAGCAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076642,ENSRNOT00000084050,ENSRNOT00000068276 3 3 8 96 4 8212567 8214525 AGGGTTAAGGGTTCAGCAC 60 8212489 8212507 CTTCGTAGCGATCCATCCA 59 NA Rattus norvegicus 81 Loxhd1 ENSRNOG00000017410 ENSRNOT00000023487 2 1 1 80 18 73689190 73689208 CCCTGGATGAAGATGATGG 57 73689250 73690753 TGACAATGTAGGTTATGGCTG 58 NA Rattus norvegicus 81 Cd3eap ENSRNOG00000016825 ENSRNOT00000034266 1 1 1 86 1 80270665 80270683 GAAGTGTGGCTTATCCGAG 58 80269511 80269529 AACAGTCTTGGAGCCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Cep295nl ENSRNOG00000033143 ENSRNOT00000046213 3 1 1 99 10 107376574 107376592 AAGTTATCATCACGGGCCA 59 107365136 107365154 GCTTCATCTTCGGAAGAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561114 ENSRNOG00000030956 ENSRNOT00000057099 1 1 1 93 18 41898796 41898814 CTCTTGCTTTCAACGCCTG 60 41898596 41898739 ATTCTCCACCTGGTCTGTG 59 NA Rattus norvegicus 81 Kcng4 ENSRNOG00000015746 ENSRNOT00000021271 1 1 1 93 19 52280113 52280131 CTCTCCGTTCTCTTCGTGG 60 52273738 52280056 TAGCGCATTCTCCCTTGTC 60 NA Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000050827 3 1 2 92 4 32541759 32541777 CTCTGACACAAGCACACTG 59 32541831 32558608 ACTGCTGCATATGTTATCTCG 58 NA Rattus norvegicus 81 Btbd9 ENSRNOG00000000540 ENSRNOT00000000649 3 1 1 80 20 9207525 9207545 TTCTAGATGCCATCAAAGTGC 59 9199521 9207484 TGTTCTCTTCGGGTATGAGC 60 NA Rattus norvegicus 81 Tfap2c ENSRNOG00000005246 ENSRNOT00000006991 3 1 1 90 3 170550563 170552114 AAGAGGATTGCGAGGATCG 60 170552167 170552186 GGACTGTAGAGATGCTGTCC 60 NA Rattus norvegicus 81 RGD1559732 ENSRNOG00000043019 ENSRNOT00000048642 2 1 1 83 10 45260245 45262102 ACTTACCTGCTTGGACCTG 59 45262148 45262167 GATTTCCGTGGACAGAAGTC 59 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152,ENSRNOT00000015325 2 2 2 80 4 81238266 81238287 CTAACTACGGTCCAATGAAGAG 58 81237546 81238225 GACCATAGTTCCCTCCACC 59 NA Rattus norvegicus 81 Ube2d4 ENSRNOG00000034016 ENSRNOT00000049772 1 1 1 60 14 2934016 2934034 CCTTAGTGCCTGAGATTGC 58 2933974 2933993 GCTGTTCTGTTGTACTTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clic3 ENSRNOG00000015184 ENSRNOT00000020497 3 1 1 90 3 2677942 2678041 GCACATTGTGGATACCGTG 59 2678094 2678113 CAATGCACTGTCCAAGTAGC 60 NA Rattus norvegicus 81 AABR07065265.1 ENSRNOG00000021751 ENSRNOT00000032968 2 1 1 84 6 117972600 117972650 CATAAATAACTGTAGTGACCAGGAC 59 117972540 117972558 GAAGCCATCCACATGAACC 59 NA Rattus norvegicus 81 LOC691056 ENSRNOG00000021048 ENSRNOT00000067679 3 1 1 132 1 101788071 101789396 CTCTTCGACCAGGAGACTC 59 101789492 101789510 TGTTGGGAAACCCATCTCC 60 NA Rattus norvegicus 81 Pomc ENSRNOG00000012686 ENSRNOT00000016976 2 1 1 153 6 28386266 28386284 CCTCCATAGACGTGTGGAG 59 28388146 28388164 GTCAAGGGCTGTTCATCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 3 2 2 80 20 29043886 29043906 CCTACTTCATCACGTATGGGA 59 29041642 29043849 CTTCAGGATAAACATATTCCTGGC 60 NA Rattus norvegicus 81 LOC689821 ENSRNOG00000042277 ENSRNOT00000067365 2 1 1 60 14 105069514 105069533 AATGGACATCAACACTGCTC 59 105069473 105069491 TAGGCTGTCATGGATGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr4 ENSRNOG00000001181 ENSRNOT00000068289 2 1 1 92 20 10248059 10248077 GGAGACGTCTACTCCTTCC 59 10247393 10248003 ACTCACAGCCACATCTAGC 60 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 1 2 4 80 2 182030319 182030337 AGACGGAATACTGCCACAC 60 182029746 182030280 GAATGATCTCTTCACACTCTTTCC 60 NA Rattus norvegicus 81 LOC498222 ENSRNOG00000004341 ENSRNOT00000005791 1 1 1 80 13 47460413 47463912 CCCACTCTGGATCTAGTGAC 59 47463955 47463973 TGGTCTTCTCCAGGAAGAG 58 NA Rattus norvegicus 81 Rn60_X_0730.3 ENSRNOG00000051117 ENSRNOT00000076480 3 1 1 60 X 72059566 72059585 CAAGTGCTCATTTACTGTCG 57 72059525 72059543 TGTCAAAGGCTTTCACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd209b ENSRNOG00000029881 ENSRNOT00000061749 1 1 1 80 12 2822775 2822794 TCCAAGTGCAGAATGAATCC 58 2821455 2822734 GGATCTTGGAAAGGAGTTCAG 58 NA Rattus norvegicus 81 AABR07035098.1 ENSRNOG00000000887 ENSRNOT00000001186 1 1 1 99 12 4634349 4634368 GCCTGTCTACTGTTCTGTC 58 4634429 4634449 TCTGCTTCTGTAAGAATCCTG 58 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000034090,ENSRNOT00000078746 1 2 2 96 14 18839196 18839214 TGAAGACCCTACCAAGGGT 60 18839001 18839138 AGAGTGGCTATGACTTCTGTC 59 NA Rattus norvegicus 81 Cela2a ENSRNOG00000013628 ENSRNOT00000018349 2 1 1 91 5 160382215 160382233 CTTTCCTCTGGAAAGTGGC 59 160381735 160382163 CTAGAGTTGCTGATACAATGGG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 2 4 4 80 2 92587147 92592337 AGGTCCTCCAGAGAAATGTG 59 92592379 92592398 TTCTTTGCAGGTCGTAATGG 59 NA Rattus norvegicus 81 Cox16 ENSRNOG00000047115 ENSRNOT00000008954 3 1 1 80 6 105209961 105214124 GTTCCCATGTTGTTGCTGG 60 105209899 105209920 AATTGTCACAGCATCATATCGG 59 NA Rattus norvegicus 81 Dhrs7 ENSRNOG00000005589 ENSRNOT00000007645 3 1 1 81 6 95531978 95536602 GAAGATGCCTGGAGAATGG 58 95531915 95531933 TCATGGGAACTTGTGTCAG 57 NA Rattus norvegicus 81 Cipc ENSRNOG00000011111 ENSRNOT00000014980 1 1 1 145 6 110975755 110975773 AGGAAAGTCCCATCGAGAG 59 110975882 110985833 CATTCTGAGCTCCCATCTG 58 NA Rattus norvegicus 81 LOC103689945 ENSRNOG00000056617 ENSRNOT00000081997 2 1 1 80 15 4011193 4011291 AGAAGAAACATACAGGCATGG 58 4011133 4011152 TTCGGCTTAAGGTAGGAGAG 59 NA Rattus norvegicus 81 Skint8 ENSRNOG00000037680 ENSRNOT00000057169 3 1 1 80 5 131898522 131899117 TTGCAGAAGACAAGGATGTG 59 131899158 131899178 TTCAGTATTTGAACTGGCCAC 59 NA Rattus norvegicus 81 Tat ENSRNOG00000016348 ENSRNOT00000022721 1 1 1 80 19 41684745 41684763 CCTGAAGTTACCCAAGCCA 60 41682502 41684701 GGATAGGTAGCCGATGGAC 59 NA Rattus norvegicus 81 Pip5kl1 ENSRNOG00000048676 ENSRNOT00000074122 2 1 1 81 3 11594955 11595157 GTTCACAAAGAGGGCTTCG 59 11595202 11595220 CTTCAGTCAGGCCAATGGA 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 1 6 7 80 1 102915771 102920319 TTTACTGAAGGGTCTGGCT 58 102920363 102920381 AGAAGATCCAGTGCCTCTC 59 NA Rattus norvegicus 81 Cstf1 ENSRNOG00000004775 ENSRNOT00000055101 1 1 1 80 3 170385579 170385600 GGATGCTTCCATCAAGATACTG 59 170385639 170385793 GTCTCATTCATCATGACCTCG 59 NA Rattus norvegicus 81 Tpcr12 ENSRNOG00000048210 ENSRNOT00000072317 1 1 1 60 10 34403290 34403308 AGCAGGACAAAGTGGTCTC 60 34403331 34403350 ATAAGAGGGTTGAGCATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il24 ENSRNOG00000004470 ENSRNOT00000006106 3 1 1 80 13 47620284 47620304 AAGGTCTTGAAGTCATTCTCC 58 47619805 47620242 GGCATTGTCCTTACTAGGC 58 NA Rattus norvegicus 81 Olr597 ENSRNOG00000032521 ENSRNOT00000049471 1 1 1 60 3 76044817 76044836 CCGATGTTGAGTGTATGCTG 59 76044859 76044877 TTGCTGATTGCCTTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035501.1 ENSRNOG00000049220 ENSRNOT00000072986 1 1 1 68 12 18227516 18227534 TCACTGTGGCTATTGGTGG 60 18222301 18222319 ATTCTGGAGTTCCCAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1559588 ENSRNOG00000049331 ENSRNOT00000072303 2 1 1 80 12 19714497 19714516 AACAGAATCTGGCTATGGCT 59 19714557 19714872 GATATCCTGCTGAATTCCCAG 58 NA Rattus norvegicus 81 Nptx1 ENSRNOG00000003741 ENSRNOT00000005067 2 1 1 80 10 108688636 108690498 TGGAGAAAGGTCAGAAAGAC 57 108688575 108688594 TGGCATACATGTAGTTGGTC 58 NA Rattus norvegicus 81 Apoc2 ENSRNOG00000018402 ENSRNOT00000024800 1 1 1 80 1 80589273 80589760 GAAACTGAGGGACATGTACAG 59 80589213 80589231 AGAGTAAGGAGCTGGTCTG 58 NA Rattus norvegicus 81 Cdk9 ENSRNOG00000022586 ENSRNOT00000032893 2 1 1 80 3 11744384 11744513 CACAGGAACAAGATCCTGC 59 11744322 11744340 ATCTGCCAGCTTTAGGACC 60 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109,ENSRNOT00000081482,ENSRNOT00000091828,ENSRNOT00000045400 3 4 4 80 5 141194991 141195709 TTGATTCACCGATACAGACCT 59 141194931 141194949 AGCCTGTTCCAGATTCTCC 59 NA Rattus norvegicus 81 Actl9b ENSRNOG00000026033 ENSRNOT00000031286 2 1 1 60 8 4086119 4086137 CAGCCTAAGAGACGAACCA 59 4086157 4086179 CTGCCTCACCTATAAACATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr536 ENSRNOG00000009943 ENSRNOT00000013201 1 1 1 60 3 74596811 74596830 TGTAGATGCCTTCAACACAG 58 74596770 74596788 ACTGAGGAGTGTGAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344,ENSRNOT00000025354 2 2 2 80 18 56076566 56076760 GAAGCTTCCGAAATCTGCC 59 56076804 56076822 TTATCCATGGACAGTGGGC 60 NA Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 1 1 1 60 7 123579062 123580719 AAATGTCCTTCGGTCTTCTC 58 123580741 123580760 GTCCCAACATAGAGAAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 2 1 1 60 7 123579063 123580720 AATGTCCTTCGGTCTTCTCC 60 123580741 123580761 TGTCCCAACATAGAGAAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Nrxn3 ENSRNOG00000047574 ENSRNOT00000064872 1 1 1 80 6 114018605 114018623 TCTGCTGAATGCTCAAGTG 58 114018664 114066449 AGTGGAAAGACTCTTATCTGAC 57 NA Rattus norvegicus 81 AABR07041771.1 ENSRNOG00000033679 ENSRNOT00000042507 1 1 1 60 X 139229103 139229125 CTTGTGTAAAGATGGCTCTTCAG 60 139229065 139229086 AATCTCAACCTTAGCTGATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps51 ENSRNOG00000020996 ENSRNOT00000028495 3 1 1 80 1 221432470 221432488 GACTATGAGACAGCCACCA 59 221432228 221432428 TGTAACAGGAGACTGATCCTG 59 NA Rattus norvegicus 81 Arf4 ENSRNOG00000012623 ENSRNOT00000017692 1 1 1 80 16 2346054 2346073 TTCACAGTTTGGGATGTTGG 59 2346114 2350688 AATGAGACCCTGGGTATTCTG 59 NA Rattus norvegicus 81 Ccdc90b ENSRNOG00000009462 ENSRNOT00000012781 2 1 1 80 1 157411364 157411465 AGCAGCTGATTAATGAAACCAG 59 157411506 157411524 TATCTGTCACTCTGCTCCG 59 NA Rattus norvegicus 81 Caskin2 ENSRNOG00000004310 ENSRNOT00000005942 1 1 1 80 10 104349216 104349235 GAGCGCTTAAGGATTTCTGG 59 104348616 104349173 GTTCAAGCACCGTGATGAC 60 NA Rattus norvegicus 81 Tbcb ENSRNOG00000020781 ENSRNOT00000028211 3 1 1 80 1 91043372 91043391 TACAGCAAGTTGGATCAGGA 59 91043432 91046325 GTGGTCAATGACATGGATTCG 60 NA Rattus norvegicus 81 Hbg1 ENSRNOG00000030879 ENSRNOT00000039946 3 1 1 82 1 168994177 168994197 AGAAGGCTGCTATCATAAGCA 59 168993985 168994133 AACAATCAGGAGCCTTCCC 60 NA Rattus norvegicus 81 Olr1237 ENSRNOG00000047869 ENSRNOT00000075043 1 1 1 60 4 1497623 1497641 GTTCATCTAAGGGCAGGTC 58 1497663 1497683 GAAACAACAATGATGTGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd2b ENSRNOG00000023508 ENSRNOT00000032664 1 1 1 80 6 28959008 28959288 TAACCATACTGGTCTCGGC 59 28958946 28958964 ATGCAGATGTCCTCTTCCC 59 NA Rattus norvegicus 81 Zcchc14 ENSRNOG00000018226 ENSRNOT00000074448 2 1 1 80 19 53653662 53653682 TTAGACTGGCTTAGGAAACTG 58 53652360 53653620 AAGGCTCAGAAACTTCTCC 57 NA Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794 3 1 2 80 20 30965842 30965860 GACCTGAAGGAAGAGCTCC 60 30963189 30965798 ACTACCACATTCCTGCTCC 59 NA Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794,ENSRNOT00000065614 1 2 2 91 20 30942726 30942744 TAATGCCTACCTTCGCCTG 60 30940668 30940686 CATAGATGCCAGCTTTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 1 2 2 80 2 197740141 197747746 TACTCACTGGTGAGACATGG 59 197747789 197747807 CCAGGTTCTTGGCAATTCG 60 NA Rattus norvegicus 81 Cbx1 ENSRNOG00000008689 ENSRNOT00000011665 2 1 1 80 10 84670044 84670580 GTTTCTCAGATGAGGACAACAC 59 84670620 84670639 GGGACTGTAGAAACTCAGCA 60 NA Rattus norvegicus 81 Ube4b ENSRNOG00000014986 ENSRNOT00000055572 3 1 1 80 5 166159328 166161782 ATGACCAGCGATCCTACAG 59 166159266 166159285 CGATGGTGGATTTGATTCCT 58 NA Rattus norvegicus 81 Grin2a ENSRNOG00000033942 ENSRNOT00000044626 2 1 1 80 10 6082917 6111292 TTGGTGATGGTGAGATGGAG 60 6111331 6111353 TACTCATCACCTCATTCTTCTCG 60 NA Rattus norvegicus 81 RGD1561137 ENSRNOG00000030143 ENSRNOT00000043621 1 1 1 60 3 21984037 21984056 AGTACAAGTTACTGGAGCCT 58 21984079 21984097 ATATCCACACCAGCAAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp4 ENSRNOG00000018012 ENSRNOT00000024412 3 1 1 80 1 47120846 47122354 GATGAAGATGACTTACCAGTTACG 59 47122391 47122411 TGCAATAGGGATGTTTACCGT 60 NA Rattus norvegicus 81 Blk ENSRNOG00000010798 ENSRNOT00000015021 2 1 1 80 15 46564075 46565234 TGAGAGCAATAAAGGTGCC 58 46564013 46564033 CGGATCTTATAGTGCTTGACC 58 NA Rattus norvegicus 81 Vom1r49 ENSRNOG00000050887 ENSRNOT00000046111 1 1 1 60 1 67660739 67660758 ACAATCAGCCCTAATCACTC 57 67660778 67660799 CAATGTACTTGATGACTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap36 ENSRNOG00000007552 ENSRNOT00000068717 1 1 1 80 X 136488935 136488953 CTGCAAGAGACTGCTTACC 58 136488997 136490201 GTCAGTGGGTTGAACTCTG 58 NA Rattus norvegicus 81 Trim55 ENSRNOG00000012723 ENSRNOT00000017125 1 1 1 80 2 104439137 104439156 ACAACTTCACAGTCAACCTC 58 104439197 104440413 CGTCTTCATCTTCCTCTTCTC 58 NA Rattus norvegicus 81 Athl1 ENSRNOG00000014783 ENSRNOT00000020004 3 1 1 80 1 213742278 213742371 CTGTCACCAGGACAGAAGG 60 213742414 213742433 GAATTTCTGGGCAGCTATGG 59 NA Rattus norvegicus 81 Crebzf ENSRNOG00000018987 ENSRNOT00000025653 2 1 1 93 1 156294989 156295007 GGATAAGGTGTCGGTGGAG 60 156294703 156294721 CTGGCAGGAAGGAAATCAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lsm4 ENSRNOG00000019572 ENSRNOT00000026567 2 1 1 119 16 20508437 20511634 GGAAGATGCTTCCCTTGTC 58 20507341 20507360 TGATGTTCATCCAGTTGTCG 58 NA InUTR Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 2 1 1 275 16 20555659 20557349 ATACTCAGTCCAGAGGTGC 59 20557588 20557606 TCGTAAGTGCAGTTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Krcc1 ENSRNOG00000007124 ENSRNOT00000009327 3 1 1 114 4 99143851 99145493 CCTGATAACGATAATCCCTTTCTG 59 99145565 99145584 TCTAAGCCTCTGGCTTTCTG 60 NA InUTR Rattus norvegicus 81 Dhx16 ENSRNOG00000030157 ENSRNOT00000065025 2 1 1 80 20 3377704 3377722 GAGGAGACCACAGTTCCTG 59 3377548 3377660 GTCGTGGATCCCTAAGCTC 60 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 2 2 2 80 8 14115819 14117151 GCAAAGCAACAGATCTCAG 57 14115757 14115776 TAAGTCTCCCATCATTCCCT 58 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135,ENSRNOT00000079732 3 2 2 80 5 145164588 145164611 TGTAAGCTACAGAAGACCATAGAG 60 145164647 145165506 GACCTTGCAAACTTCACTACAG 60 NA Rattus norvegicus 81 MGC114427 ENSRNOG00000023016 ENSRNOT00000037881 3 1 1 100 X 147494727 147495263 TACATCAGTGTGAAGGTTTGTG 59 147495324 147495342 GCTGTTGTCAGTAGGTTCC 58 NA InUTR Rattus norvegicus 81 Cend1 ENSRNOG00000018448 ENSRNOT00000024867 1 1 1 126 1 213971727 213973057 GACGTAAGACCCATATAATGCC 59 213971622 213971640 CTGACTTTCCTCGGGACTC 60 NA InUTR Rattus norvegicus 81 Crtam ENSRNOG00000008153 ENSRNOT00000010792 1 1 1 80 8 45171208 45171226 AAGAAACAACCTCAGAGGC 58 45167717 45171165 TCATTGAGACTGTACTCGTG 57 NA Rattus norvegicus 81 Hsd11b2 ENSRNOG00000017084 ENSRNOT00000023130 1 1 1 83 19 37480165 37480183 CATTCAGCTGTGAACTGCT 59 37480229 37480405 CATTAGTCACTGCCTCTGTC 58 NA Rattus norvegicus 81 St8sia3 ENSRNOG00000018305 ENSRNOT00000024752 2 1 1 80 18 59753130 59754753 ACATGTCAACAGGTACTGGA 59 59754794 59754814 GATGCAAGGGTGTACATAAGG 59 NA Rattus norvegicus 81 Diexf ENSRNOG00000004789 ENSRNOT00000006395 2 1 1 80 13 111849481 111849499 AGCACAATGACCAAGAAGC 59 111848916 111849437 CTTCTTGGAAACCCTGTCG 59 NA Rattus norvegicus 81 Pth2 ENSRNOG00000020681 ENSRNOT00000028072 2 1 1 216 1 101178273 101178291 CTTCTACTGCTTGTGCCCT 60 101178640 101178658 GCATGTAAGAGTCCAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 3 2 2 82 8 50223420 50223761 TTTATGAAGAAAGCCCAGGAG 58 50223358 50223376 ATTTGAAGGCCAATGACGT 58 NA Rattus norvegicus 81 Pdcd7 ENSRNOG00000014340 ENSRNOT00000019258 2 1 1 94 8 70872328 70872593 GGGATCCAGATGAGTTCCC 59 70872651 70872669 TATTTGAATGAGCGCAGGC 59 NA Rattus norvegicus 81 RGD1310717 ENSRNOG00000017039 ENSRNOT00000022992 1 1 1 80 1 169352150 169352168 AGCTGGAACAGCTACAGAG 59 169351316 169352106 GTGCATACTCCTTGACCCT 59 NA Rattus norvegicus 81 Olr709 ENSRNOG00000055123 ENSRNOT00000082898 1 1 1 60 3 78525731 78525749 TTCACAGCTTGTATGAGCC 58 78525689 78525708 TGACAATCTCAGTACCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rarres1 ENSRNOG00000037853 ENSRNOT00000057504 3 1 1 83 2 164651296 164651397 CAACACAGGAAATCATTCCCT 59 164651233 164651254 GCTCTTGACAATGGTAATTGAC 58 NA Rattus norvegicus 81 Tmem253 ENSRNOG00000039489 ENSRNOT00000060521 3 1 1 76 15 28415082 28415100 ATTCTTGCTGAGCCAGAGG 60 28415140 28415483 AGAGACCCTCCTGTAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Dbx1 ENSRNOG00000014706 ENSRNOT00000019739 1 1 1 90 1 104972464 104973289 CAGAAGAGAAACTTCGCCG 59 104972392 104972410 GATGAAGGGTTGGAACGAG 58 NA Rattus norvegicus 81 Rnase11 ENSRNOG00000039543 ENSRNOT00000060614 3 1 1 82 15 27974903 27975433 CCAAAGGAACCGACAAGAC 59 27974839 27974857 GCTCTACAAGAAGCAGTCC 58 NA InUTR Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000073549 3 1 2 84 3 55462464 55464616 AAACAGGTCCAGGAAGTCC 59 55464664 55464682 GTGTAGTTTAAGGCGGCTG 59 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 1 2 2 80 1 52444622 52444640 TCTGAAAGTGTTAGTGCGG 58 52424719 52444582 CTTAGGAGATGGTTCATCTTCTG 59 NA Rattus norvegicus 81 Psmg2 ENSRNOG00000017729 ENSRNOT00000024126 1 1 1 80 18 63402502 63402520 TGCCAGGATCATCGTTCTC 60 63402562 63403300 AGATACCGAAAGGGAGTACTG 59 NA Rattus norvegicus 81 Pcdhga7 ENSRNOG00000027290 ENSRNOT00000027015 1 1 1 60 18 30866433 30866452 TCACACTTTGTAGGCTTGGA 59 30866474 30866493 AAACCTCGTGGGAATATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 2 2 2 80 10 110161504 110162245 CTATCCTTCTGAATTTGCCAC 57 110161444 110161463 CTCAGGTAGGAGTAGTCAGG 58 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 3 1 1 82 1 257080134 257081938 AAACTGGGTTCATAGGTCCC 59 257081981 257082001 CATAAGAATCATGGCACTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721,ENSRNOT00000048900 3 2 2 83 19 43173800 43174097 GAACTTCTGGATTGGGCTC 58 43174143 43174162 AAACTGGTGAAGGACTTGTG 58 NA Rattus norvegicus 81 Cd300lb ENSRNOG00000036728 ENSRNOT00000035639 1 1 1 80 10 103472303 103472323 ACTTCTAAGCAACTTTCCTGG 58 103471267 103472261 GTAATGGGTCCTCTTCTGC 58 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000066043,ENSRNOT00000083132 2 2 2 80 5 35924182 35924201 GAGACACTTCAAGAGCTCTG 58 35924241 35925945 CATTCATAACACCATATGACCC 57 NA Rattus norvegicus 81 Il17c ENSRNOG00000013007 ENSRNOT00000017358 3 1 1 96 19 55246945 55247181 CTGTGATGTGTCTCCTGCT 59 55247240 55247259 AATGTCGTCTTATGGCTTCG 59 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196,ENSRNOT00000083812 2 2 2 80 3 148472646 148473519 TAGTGATGTCGTACATCCCTC 59 148473559 148473579 TCAATGTGAATCTGGTGTTGG 59 NA Rattus norvegicus 81 Olr428 ENSRNOG00000030460 ENSRNOT00000041835 2 1 1 60 3 21276918 21276936 TGGAAAGCCTTCTCTACCT 58 21276959 21276978 TACTCCCATAGAACAGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcbld1 ENSRNOG00000000407 ENSRNOT00000000462 1 1 1 80 20 33450421 33450442 TTTACCATCAGCTATGACAACG 59 33450481 33453253 CTGCTGATAATCTGCCATGTC 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102,ENSRNOT00000066191 1 2 2 80 5 27415638 27424369 CCAGTCGCATTAGATGCAC 59 27424412 27424431 AGCTTTCTTCCAGATCTCCT 58 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102,ENSRNOT00000066191 2 2 2 80 5 27415638 27424369 CCAGTCGCATTAGATGCAC 59 27424411 27424431 AGCTTTCTTCCAGATCTCCTC 59 NA Rattus norvegicus 81 Grik4 ENSRNOG00000030910 ENSRNOT00000048347 2 1 1 80 8 46836127 46851713 CTTTACAGAGTTCATATGGGACG 59 46836069 46836087 CATGAAGAGCCAGACTCCT 59 NA Rattus norvegicus 81 C6 ENSRNOG00000024115 ENSRNOT00000033112 3 1 1 80 2 54466360 54466378 ACTACCCATGGACTCACTG 58 54466420 54467973 TCACTACGATTTGTCTCTGTC 58 NA Rattus norvegicus 81 Olr601 ENSRNOG00000005863 ENSRNOT00000007679 1 1 1 60 3 76085798 76085816 CTCTCGTCTTCACACTCCT 59 76085756 76085776 GCAGAAATCCACAAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003,ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000025291,ENSRNOT00000045163,ENSRNOT00000063853,ENSRNOT00000025045 2 10 10 88 9 95299511 95299529 CTACACCGGAACTAGACCA 58 95299581 95299864 CCTTTGGATGACCAAGCAG 59 NA Rattus norvegicus 81 Fshb ENSRNOG00000004898 ENSRNOT00000006512 3 1 1 83 3 98091322 98091340 TAGAGAAGGAAGAGTGCCG 59 98089739 98091276 TATACACCAGATCCCTGGTG 58 NA Rattus norvegicus 81 Stk4 ENSRNOG00000013529 ENSRNOT00000066657 2 1 1 80 3 160512849 160512868 GGCAAGAATGTATCTGGCTC 59 160512909 160542678 GCTCTTCAGAAACTCGTAGTC 59 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 3 1 2 145 2 166669336 166681789 GATGAAGAAATAGAGCCCAAGG 59 166655586 166655605 CTTCACACGCTTGAAATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nfe2l2 ENSRNOG00000001548 ENSRNOT00000002114 2 1 1 80 3 62499627 62499647 ATTTAAGCAGCATACAGCAGG 59 62499226 62499589 CCGTATTAAGACACTGTAACTCG 59 NA Rattus norvegicus 81 RGD1305347 ENSRNOG00000020259 ENSRNOT00000027432 1 1 1 123 5 137359671 137359863 AAACTTAACCTTGTCCTTAGGG 58 137359947 137359965 GAGTATGGAGAGGACCACC 59 NA Rattus norvegicus 81 Nptx2 ENSRNOG00000001006 ENSRNOT00000001331 2 1 1 100 12 12023142 12023160 CTCCACAATGAGACCTCGG 60 12017929 12023078 TTGAATGCACTGTTGCCTC 59 NA Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 1 2 2 103 10 47767081 47767099 GTTGACTTCTCCATCTCCC 57 47767166 47767553 TAGGACAGTGAGTCACCTG 58 NA Rattus norvegicus 81 Rsph10b ENSRNOG00000001036 ENSRNOT00000034483 1 1 1 80 12 12692202 12692222 AGATTTCTGAAAGACTGCAGG 58 12688763 12692163 GCCGTTATAGACACTCAATACC 59 NA Rattus norvegicus 81 LOC100362350 ENSRNOG00000007758 ENSRNOT00000029039 3 1 1 80 13 110640452 110640472 AAGAGTTGCATTGTTTGGAGG 60 110637167 110640410 ATCTCACGTCTTAGCACGT 59 NA Rattus norvegicus 81 Zfp13 ENSRNOG00000003455 ENSRNOT00000004589 1 1 1 111 10 12909931 12912736 GGCTTTGGAAGTTTATCTTCAG 58 12909841 12909859 TTTGTGTCCTCTAGGGTGG 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 2 2 2 81 1 15731791 15736439 ATTCACGGGATATCGAGCT 58 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 RGD1564463 ENSRNOG00000003601 ENSRNOT00000004815 2 1 1 80 13 99388114 99392484 AGATCCTGGCAAAGTATCCA 59 99392524 99392545 GAATCATTGCGGTTATGATCCA 59 NA Rattus norvegicus 81 Olr1488 ENSRNOG00000046651 ENSRNOT00000071144 2 1 1 60 10 60363688 60363707 TATACCTCACCACCATCCTG 58 60363729 60363748 TGGGAATCCAGACAAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017658.2 ENSRNOG00000050394 ENSRNOT00000075194 3 1 1 69 15 29761071 29761090 TTACTCCTAGGCCTTCACCT 60 29760883 29760901 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 1 2 2 98 3 3657612 3657630 GTGTCTCAAGTGCAGTGAC 59 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC100910419 ENSRNOG00000038741 ENSRNOT00000059172 3 1 1 80 19 41540815 41540838 GAGGAGAAGTATAAAGCTGTTGTC 59 41540411 41540777 CATGAAATATGTCCCGCAGG 59 NA Rattus norvegicus 81 Olr1644 ENSRNOG00000039435 ENSRNOT00000060428 3 1 1 124 15 28915382 28915402 GAGAACCAGGATAAGAGACTC 57 28910246 28910264 GTGTGGTTGATGAGGACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563780 ENSRNOG00000050432 ENSRNOT00000066220 1 1 1 80 15 31867767 31867954 AGATTTGCTGGGTGAGAGG 59 31867998 31868016 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 RGD1563780 ENSRNOG00000050432 ENSRNOT00000066220 3 1 1 84 15 31867768 31867955 GATTTGCTGGGTGAGAGGA 59 31868002 31868021 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Olr619 ENSRNOG00000021473 ENSRNOT00000037779 1 1 1 60 3 76469168 76469188 TGAAGAATGCCATCAAGAGAC 58 76469210 76469228 TTCATCCTGCTTCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601,ENSRNOT00000055103 2 2 2 80 1 188302929 188302947 GCTGGGATTTCACTGTCAC 59 188302991 188304551 ACAGGTTCTCCCTGATCTC 58 NA Rattus norvegicus 81 Eif4a3 ENSRNOG00000045791 ENSRNOT00000073140 2 1 1 80 10 108415557 108415575 TGATGACATCCGCATCCTC 60 108415402 108415514 AGGTCAGCCACATTCATAGG 60 NA Rattus norvegicus 81 Pilra ENSRNOG00000033017 ENSRNOT00000039797 1 1 1 80 12 21688754 21688775 GTGAGAAACGTGAGAGTATTGG 59 21689126 21689312 CATACACGATGTTATTATCCTTGGG 60 NA Rattus norvegicus 81 Mafk ENSRNOG00000001277 ENSRNOT00000001720 1 1 1 132 12 16926395 16927283 GACATTGAAGGTCAAGAAGGAG 59 16926284 16926302 CTTCAGCCGAGTTACCTCC 60 NA Rattus norvegicus 81 Fam229b ENSRNOG00000024918 ENSRNOT00000036853 1 1 1 82 20 44219164 44219185 GAAAGTCCTTACGAGTTTCACC 59 44210587 44219121 TCACATAGCTTCCTGCCTG 60 NA InUTR Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000034083 3 1 3 80 X 123891199 123892552 CCTATAATGCTCCATCGTCCA 60 123891139 123891160 GGTCTGTAAATCTGTCATGGAG 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 1 2 2 84 19 563182 563300 ATTTGGGAACAGGATGGAG 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Olr559 ENSRNOG00000045869 ENSRNOT00000037577 3 1 1 60 3 75390573 75390594 CACTTCTTCTGTGACATACCTC 59 75390611 75390633 CATTAACAGAAGTGTCTCCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925,ENSRNOT00000036744 1 2 2 80 12 17013601 17013705 AACTCATGTACAAGTCCAAGG 58 17013747 17013765 TCTCCATCAGTCTACGCAG 59 NA Rattus norvegicus 81 Olr666 ENSRNOG00000049947 ENSRNOT00000044273 2 1 1 60 3 77618296 77618314 GATGCTTGTGTCTCCTCTG 58 77618254 77618274 TCCTTTCGTAAACCATGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem43 ENSRNOG00000007519 ENSRNOT00000010895 1 1 1 80 4 123127719 123127738 TCCCATATTCCACCAAGTCC 59 123127781 123130307 CTCTACGGAACACCTCCTC 59 NA Rattus norvegicus 81 Arhgap21 ENSRNOG00000008659 ENSRNOT00000068156 3 1 1 80 17 87738717 87739217 CAGTAAAGATGATACCAGTCCTC 58 87738659 87738677 TCAAACGTCTTCCTCACGA 59 NA Rattus norvegicus 81 Lta4h ENSRNOG00000004494 ENSRNOT00000005930 3 1 1 80 7 34318385 34320038 TCTATTCAAGGACCTCGCTG 59 34320079 34320099 TGCATACAGGCTTTATGTTCC 59 NA Rattus norvegicus 81 LOC679582 ENSRNOG00000042286 ENSRNOT00000068623 1 1 1 80 13 109675925 109675943 AGGCAGTATCCCAGAAGGA 60 109675986 109677086 AGGGTGATACTGCTTCAGAC 59 NA Rattus norvegicus 81 Rn60_X_0693.1 ENSRNOG00000051289 ENSRNOT00000076559 1 1 1 60 X 68408636 68408655 AGAAGGCAAAGCACTATCAC 58 68408678 68408696 GCCATGTGAATCTCAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000047666,ENSRNOT00000042281 2 3 4 80 8 53898579 53899466 TGTGAAGATCTTCCAGAAGC 58 53898518 53898536 ACAATCACAGCATCTTCCC 58 NA Rattus norvegicus 81 Irs3 ENSRNOG00000001389 ENSRNOT00000001874 3 1 1 111 12 22123499 22123517 AGCAGCAAACATGGTACAG 59 22123762 22123780 GCGAAGATCCAAGACTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 2 2 2 80 15 27765419 27765624 GGAGGATACGTAAAGCTGTG 58 27765358 27765378 GATGCAGTTTAGAGACTTGGG 59 NA Rattus norvegicus 81 Prss8 ENSRNOG00000019616 ENSRNOT00000026572 1 1 1 93 1 199374066 199374166 ATGTGGCTCCTTCAGTGAG 59 199373991 199374009 TTGTACAGGCAGCTACAGG 59 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 3 2 2 80 5 147855879 147855897 CCGTACGAGGAAAGAAGCA 60 147854577 147855839 GATACCAAGTACCTGATTTGCTC 59 NA Rattus norvegicus 81 Myh7b ENSRNOG00000018997 ENSRNOT00000025859 1 1 1 80 3 151149398 151149499 CGTACCAGACTGAGGAAGAC 60 151149542 151149560 AGCTCTTGACCTTGCTCTG 60 NA Rattus norvegicus 81 Sox8 ENSRNOG00000018841 ENSRNOT00000025494 2 1 1 64 10 14936590 14936608 TCCATAACGCAGAGCTCAG 60 14935513 14935531 CTTCTCGCTTTCACTCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 1 1 1 96 6 126767113 126767131 TAGTCCTGTTCTCGAAGCC 59 126767191 126767982 ATTCCAACAACCGATTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 2 1 1 97 6 126767113 126767131 TAGTCCTGTTCTCGAAGCC 59 126767191 126767983 AATTCCAACAACCGATTCCG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhga11 ENSRNOG00000027232 ENSRNOT00000026969 3 1 1 60 18 30905544 30905563 CACCTCTTCCATCAACTCAG 58 30905583 30905604 TAGAAGAGCAATTACTGTACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035776.1 ENSRNOG00000050059 ENSRNOT00000072653 3 1 1 81 12 21932324 21932345 TTCTTCTGCAAACAACAGAAGG 60 21932386 21937333 GTGCTGGTGTTATTGGTCAC 60 NA Rattus norvegicus 81 Tti1 ENSRNOG00000012880 ENSRNOT00000017213 3 1 1 80 3 154474402 154474705 TCTGGACTTAGGTGAGGGT 59 154474340 154474358 AATTTCACGGGCTGTTTGG 59 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000058750 ENSRNOT00000079546 1 1 1 89 12 30223367 30227086 ATTACTTGGCATGACAGCC 58 30223296 30223314 TAGGCCAGGTACAAAGACC 59 NA Rattus norvegicus 81 Ns5atp4 ENSRNOG00000027533 ENSRNOT00000031887 2 1 1 60 3 35542240 35542260 CATTCAGGTCACGTATCTGTC 59 35542200 35542218 TTCGAGGAAGTGCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc10a7 ENSRNOG00000011991 ENSRNOT00000015985 3 1 1 88 19 32892712 32892731 TCAGCCTCATCCTCATACTG 59 32882991 32891348 CGAGTTATTCCGTGTGGAG 58 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062,ENSRNOT00000090832 1 2 5 61 9 81675685 81675703 GTGTTGTTCACTGCCAGTC 59 81675842 81675860 CACTTGTCCAGCAGATCAG 58 NA DesignNoJunction Rattus norvegicus 81 Slc25a30 ENSRNOG00000001052 ENSRNOT00000001389 1 1 1 80 15 57822774 57826055 TGTATTCAGGGATTGCACC 58 57822712 57822731 GCTTCAAGCTTTGGTAAGTG 58 NA Rattus norvegicus 81 Tk2 ENSRNOG00000012853 ENSRNOT00000017269 2 1 1 80 19 918107 921403 AAAGCAGTGGTTTGTATTGAGG 60 921444 921462 GACGTCTGTTGTGTTGGAG 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000038780,ENSRNOT00000005995,ENSRNOT00000085680 1 4 4 80 7 28417723 28468710 TTTACTTCAACAAGCCCACAG 59 28468752 28468770 GGAAGCAACACTCATCCAC 59 NA Rattus norvegicus 81 Vom1r72 ENSRNOG00000056406 ENSRNOT00000086909 1 1 1 60 4 87700443 87700462 GTGGTCATGTACTGGTTGGA 60 87700481 87700503 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ints12 ENSRNOG00000011844 ENSRNOT00000016066 2 1 1 80 2 238267556 238268596 GAGAACTGAAGTTAAGCCGTC 59 238268636 238268656 AGGCCACTAGTTACTGAAGAG 59 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000082513,ENSRNOT00000002309 2 2 2 80 5 79239648 79248852 CCTGATGGAGAATACATTAGACC 58 79239590 79239608 ACAGACACATCTGGGAGAG 58 NA Rattus norvegicus 81 LOC102549447 ENSRNOG00000029567 ENSRNOT00000041894 3 1 1 82 8 107254568 107254586 CACCTATCAGTGCAAGGTG 58 107251579 107254525 CACTCCCAAGGATATTAGTGAC 58 NA Rattus norvegicus 81 Tas2r140 ENSRNOG00000021329 ENSRNOT00000038581 3 1 1 60 4 167201532 167201553 TGTTCACATTCATACCCTTCAC 59 167201493 167201511 AGGGAGAAGATGAGCAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 2 2 2 80 19 37578270 37578422 CCATGCCAGTAAGATTGATGAG 59 37578463 37578481 CGAACCATGTTGTAGGCAC 59 NA Rattus norvegicus 81 Slc19a1 ENSRNOG00000001232 ENSRNOT00000044212,ENSRNOT00000065236 3 2 2 81 20 12339794 12339814 CTTAAGACCTCGATCACACTC 58 12335605 12339751 TGAAGTAGATGCGGAACTG 57 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291,ENSRNOT00000043199 1 2 2 80 4 99773260 99776943 CATGGACAATTCTGAGATTGC 58 99776985 99777003 TTTCTTCGCTCCTTCAACG 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889,ENSRNOT00000046391 1 2 2 81 3 113127082 113127103 TCAAGGAGAGCCAATCTCAG 59 113127020 113127038 TAATGGACTGGCTCCTGTG 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889,ENSRNOT00000046391 3 2 2 82 3 113127082 113127104 ATCAAGGAGAGCCAATCTCAG 60 113127020 113127038 TAATGGACTGGCTCCTGTG 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664,ENSRNOT00000005853 2 3 3 80 13 47586402 47586422 CTTCTACTGGTGTCTTACCGA 59 47586463 47587017 GGCTTCTTTGTAGCTTCAGC 60 NA Rattus norvegicus 81 Depdc7 ENSRNOG00000012262 ENSRNOT00000016677 1 1 1 80 3 94668770 94670866 GACTCTCAGGAAGATGAGTGG 60 94668710 94668730 GCTTATGTCCACAACCATCTG 59 NA Rattus norvegicus 81 Sft2d3 ENSRNOG00000016216 ENSRNOT00000021708 1 1 1 120 18 24692918 24692936 ACTCTACGCGTTGATAGGG 59 24692816 24692834 AGATTGGGACTGTCACACC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07072266.1 ENSRNOG00000029216 ENSRNOT00000052250 1 1 1 92 11 87768817 87769644 ATTGGAGCAAACTTGCACC 59 87768743 87768761 GAGTGGAGTGAGTCCTGTG 59 NA Rattus norvegicus 81 Fbxo24 ENSRNOG00000024922 ENSRNOT00000038397 1 1 1 80 12 22145787 22145805 TGAGCTTCAAGCAGATCGT 59 22145845 22147268 AGTATATCTTCCCTTCCTCTGTG 59 NA Rattus norvegicus 81 Ins1 ENSRNOG00000012052 ENSRNOT00000016052 1 1 1 173 1 272799819 272799956 GCAAGCAGGTCATTGTTCC 60 272800091 272800111 GTGTAGAAGAAACCACGTTCC 59 NA InUTR Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 3 2 2 81 7 71136414 71138334 GAGTTGGGAACAGAGGACTC 60 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000082009 3 1 3 98 4 158637985 158673271 TTCCTGAAGATCTTACAGGTG 57 158637907 158637925 TTGATCCATGTTGTTGCCT 58 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000075969,ENSRNOT00000063902 3 2 4 87 13 80429848 80429866 GGGAATGAGTTGTCCTCCC 60 80428613 80429802 GATAAAGATACCTTCACGAGACAG 59 NA Rattus norvegicus 81 MGC108823 ENSRNOG00000019542 ENSRNOT00000050063 3 1 1 104 18 55576251 55576269 TAGACCTCAAGCCTAGAGC 58 55576336 55583480 TCAAGCAAATAAAGCCACAG 57 NA InUTR Rattus norvegicus 81 Ifrd2 ENSRNOG00000016150 ENSRNOT00000022092 3 1 1 86 8 116346682 116346701 TCCAGTGAAAGTGTGAACCT 59 116346750 116347083 GAAGTCCTCCTCGAGATCC 59 NA Rattus norvegicus 81 Galc ENSRNOG00000003759 ENSRNOT00000005015 1 1 1 80 6 122210528 122210546 TGGATTGATGACAGCCCAG 60 122202457 122210487 TGAGTTGTATGAGCTGATACCC 60 NA Rattus norvegicus 81 Prmt8 ENSRNOG00000053804 ENSRNOT00000086772 2 1 1 80 4 160293652 160293670 ATGTTGGGAGTGGTACAGG 59 160290539 160293611 TGGAACATTCAATCCCAAACAC 60 NA Rattus norvegicus 81 Igbp1b ENSRNOG00000008125 ENSRNOT00000010707 1 1 1 60 4 172710409 172710427 AGGCATCAGTTTCTCAAGG 57 172710450 172710469 GTGAGGACAAAGGGTTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc75b ENSRNOG00000046428 ENSRNOT00000074783,ENSRNOT00000089319 1 2 2 81 20 14053165 14054360 CCAAGAAGGACCATGAGCT 59 14054404 14054423 CTCTTGGAGTGAGGAGTGAG 59 NA Rattus norvegicus 81 Olr297 ENSRNOG00000046995 ENSRNOT00000040377 2 1 1 60 1 212940741 212940760 CTTCTGTGAGATCCCTTCTG 57 212940700 212940721 GATGTCATTGATAAAGGTGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dapk3 ENSRNOG00000020383 ENSRNOT00000027634 3 1 1 81 7 11393751 11394386 CATCACCTACATCCTCCTGAG 60 11393690 11393708 CACAGCCGAGATGTTTGTC 59 NA Rattus norvegicus 81 Olr1875 ENSRNOG00000021727 ENSRNOT00000033009 3 1 1 60 1 172877919 172877941 CTCTTTGTTGTGATTCTCCTCTC 59 172877881 172877900 CCATGATGGATGCATTTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1248 ENSRNOG00000050945 ENSRNOT00000075645 2 1 1 60 4 1626523 1626544 TTATGTACCTAAAGCCCTCCTC 59 1626564 1626583 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563124 ENSRNOG00000031205 ENSRNOT00000047587 1 1 1 60 7 23952773 23952791 GTGAAGGTTCCAAGACGTG 59 23952731 23952750 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpgds ENSRNOG00000006583 ENSRNOT00000008826 3 1 1 80 4 95957192 95960531 AAACACAGATTTGGCTGGG 59 95957130 95957148 GACATGAAATCGTCCAGGG 58 NA Rattus norvegicus 81 Il6r ENSRNOG00000020811 ENSRNOT00000028234 3 1 1 83 2 189227061 189227085 TATGGTCAAAGAACGGTGTG 58 189226515 189226533 CACATGCTTTACTCCTCGC 59 NA Rattus norvegicus 81 Uba6 ENSRNOG00000021931 ENSRNOT00000037509 3 1 1 80 14 23513089 23513110 CTTCTTAAGTGGTATGGGTGGT 60 23513745 23517141 TGAATTGTCAGTGCCTTAATCC 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100,ENSRNOT00000061303,ENSRNOT00000048137,ENSRNOT00000048353,ENSRNOT00000012129 3 5 5 80 3 2263983 2264934 GGAGTGTCTGATGACGTCC 60 2264978 2264996 CATAGTTGTGGTTGCCGTC 59 NA Rattus norvegicus 81 Armc12 ENSRNOG00000000508 ENSRNOT00000000609 2 1 1 81 20 8111272 8111290 AAATCCAAGCTCTGAACGC 59 8111334 8118841 ACCTTGATGCAATGTTCCTG 59 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 1 2 2 80 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027270 48027291 ACTGGAATATTGAAGAAGCCCT 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 1 3 3 80 18 65388811 65388832 CTCCCAGTACTACCCATATTCC 59 65388873 65389350 TTCTTTGTCTGCACCTCCA 59 NA Rattus norvegicus 81 AABR07041179.1 ENSRNOG00000016400 ENSRNOT00000022122 1 1 1 96 X 121612985 121613174 TTCATGTTACCCGCATCCA 59 121613233 121613252 TAGGAACATGGAAGGCTGTG 60 NA Rattus norvegicus 81 Efcab7 ENSRNOG00000009782 ENSRNOT00000013089 2 1 1 80 5 118702071 118705447 ACAGAGAAGTGTTTGGATGG 58 118705489 118705508 TTAGCCTACATCCAGTTGTG 57 NA Rattus norvegicus 81 Traf3ip2 ENSRNOG00000000595 ENSRNOT00000000728 2 1 1 80 20 44713839 44713859 TATTTGAGGACAGAATCCGGG 60 44713895 44714965 CGATTATCATCACTGTCTTATCTCG 59 NA Rattus norvegicus 81 Olr455 ENSRNOG00000009586 ENSRNOT00000012711 1 1 1 60 3 73124388 73124406 TCCTAGTGACCTGCATCTC 58 73124346 73124364 AATTGAGCCAGACATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2j4 ENSRNOG00000031004 ENSRNOT00000012977 2 1 1 80 5 119555160 119557280 AGGAAATGTCAAAGTACCCAG 58 119555100 119555118 CAAAGAAGAGGTCCAGGGT 59 NA Rattus norvegicus 81 Serpina5 ENSRNOG00000009855 ENSRNOT00000013138 3 1 1 80 6 127768352 127769266 ATCTTCTTCAAAGCCAAGTGG 59 127769307 127769326 CTTCTTGGGAGTCACATGGT 60 NA Rattus norvegicus 81 Tra2b ENSRNOG00000001783 ENSRNOT00000002429 2 1 1 80 11 82389946 82390833 GAGATCAGATTTACAGAAGGCG 59 82390872 82390892 AGGATCTTGATCGAGAACGAG 60 NA Rattus norvegicus 81 Olr445 ENSRNOG00000049448 ENSRNOT00000072510 1 1 1 60 3 72998272 72998293 CACAACACATACAACATTGACC 59 72998313 72998332 ATGGTTGATGGTATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr3c1 ENSRNOG00000048800 ENSRNOT00000019409 3 1 1 60 18 32670051 32670071 GGCAGTGTGAAATTGTATCCC 60 32670011 32670031 ACTCCAAATCCTTCAAGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gad2 ENSRNOG00000018200 ENSRNOT00000024901 1 1 1 80 17 89185301 89185322 AAGATGTTTCCAGAAGTCAAGG 59 89185362 89197831 AAAGTGACTATGCTCTGACG 58 NA Rattus norvegicus 81 RGD1564571 ENSRNOG00000042795 ENSRNOT00000001348 3 1 1 80 12 2782555 2783434 TTATGAGGAGCAGAGCTTCC 59 2782494 2782513 TCCTCTTGTGAGTCTGACAG 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715,ENSRNOT00000021976 1 2 2 80 1 78750085 78751964 ACAGATCAAGAGGAACGCA 59 78752007 78752026 TGCAAGAAGGGTATCTGCTC 60 NA Rattus norvegicus 81 Pnpla3 ENSRNOG00000022268 ENSRNOT00000015767 1 1 1 80 7 125040812 125040831 AACCTCAGTCTTCGTCTCTG 59 125040873 125043158 TCCCATCACCTTCACATCAG 60 NA Rattus norvegicus 81 LOC501282 ENSRNOG00000046883 ENSRNOT00000072870 2 1 1 84 9 10891097 10891116 AGATCGAGTACACCATGGC 59 10891617 10891635 GTCACTTCAAACTCCTCGC 59 NA Rattus norvegicus 81 Tmem198 ENSRNOG00000020061 ENSRNOT00000027208 1 1 1 80 9 82674974 82677132 TACTGCTTCTTTGGTTACCG 58 82677174 82677193 CAGGAAGATAACCACTGAGC 58 NA Rattus norvegicus 81 Cpa3 ENSRNOG00000011181 ENSRNOT00000014970 2 1 1 80 2 105044947 105047742 ACCATTGAGCTTGACTTCTG 58 105044886 105044906 CTCAGTAACTCGGAAATCCAC 59 NA Rattus norvegicus 81 Pm20d1 ENSRNOG00000039745 ENSRNOT00000009838 2 1 1 80 13 48582191 48582457 TTGTAAGCAGGGTAATGGAG 57 48582500 48582518 CTGCATTGAACATGGTGAG 57 NA Rattus norvegicus 81 Rps27a-ps1 ENSRNOG00000034246 ENSRNOT00000049535 1 1 1 60 5 138628604 138628623 GTCCTTCTGATGAATGTGGT 58 138628563 138628582 CAGTAATGCCTGTCAAAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps27a-ps1 ENSRNOG00000034246 ENSRNOT00000049535 2 1 1 60 5 138628603 138628623 GTCCTTCTGATGAATGTGGTG 59 138628563 138628582 CAGTAATGCCTGTCAAAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr621 ENSRNOG00000047515 ENSRNOT00000044856 1 1 1 60 3 77309499 77309520 CTACAATGAATGTATGACGCAG 58 77309541 77309559 AAAGATCTCCATGCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 2 2 2 104 4 157515290 157515975 TCTTCAAGTTCTGCTGGGA 59 157516043 157516061 GAGACAGGTCTGTCAGTGG 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 3 3 3 80 7 28728084 28728103 GATTTGGTGTTTCATCCCAG 57 28728146 28737443 TTCCAAGCTCCAAATCCTG 58 NA Rattus norvegicus 81 LOC688389 ENSRNOG00000028582 ENSRNOT00000059424 3 1 1 81 2 88744820 88746116 CCTTATAAGGTGTGCTTGCC 59 88744758 88744778 GAGACTGAATTATTGGTGCCA 58 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 3 2 2 80 7 120214813 120216379 GATGTCACCAAGCTCTCAG 58 120216423 120216441 CCCTATCTTCAGGGAGCTC 59 NA Rattus norvegicus 81 LOC102551435 ENSRNOG00000029529 ENSRNOT00000002334 3 1 1 90 11 83979254 83985183 GTATCCTCGTGCTAGGCTG 60 83979182 83979201 GGAGAGTAATCCACACTGGT 59 NA Rattus norvegicus 81 Trim3 ENSRNOG00000018356 ENSRNOT00000024850 1 1 1 80 1 170442473 170443841 CCATTCAGTGAAGGTGTACAG 59 170442413 170442431 TTGAACTGTCCATTGCCCT 60 NA Rattus norvegicus 81 Rab14 ENSRNOG00000018901 ENSRNOT00000025649 3 1 1 81 3 14376828 14376846 AGCAGATTTGGAAGCACAG 59 14376443 14376784 TTCAAGGAACAATAAGCCGT 58 NA Rattus norvegicus 81 Prim1 ENSRNOG00000031993 ENSRNOT00000065593 2 1 1 80 7 2445373 2445393 AGGGTTTCAGAGATTTCACAG 58 2445434 2445578 TTCTTGGTATTCTGTGGTGC 58 NA Rattus norvegicus 81 Clk1 ENSRNOG00000025768 ENSRNOT00000030934 2 1 1 80 9 65297529 65297548 GATTGGATTGGGATGAGCAC 59 65297095 65297489 GAGACAGCATAAACTCCTTCAG 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318,ENSRNOT00000081804 2 2 2 80 1 22249436 22249457 TGAAGAAATCACAGAGGATGAC 58 22247928 22249396 TCCATAATGTCAGCTTCCAG 57 NA Rattus norvegicus 81 Trpt1 ENSRNOG00000023023 ENSRNOT00000031458 1 1 1 80 1 222253323 222253430 GTCACTCCCTACAAGTCCC 59 222253473 222253492 TACCATGGACTAGTGTCGAG 58 NA Rattus norvegicus 81 Spdl1 ENSRNOG00000007292 ENSRNOT00000009648 1 1 1 80 10 19646654 19650478 GACCACAGCTGAGAATTATAACC 59 19646596 19646614 AGACTCTCCAACATCCGAC 59 NA Rattus norvegicus 81 Traf1 ENSRNOG00000048914 ENSRNOT00000072400 3 1 1 80 3 14017209 14017229 GATCTGTCCTAAATGCAGAGC 59 14009609 14017167 TCAGGGAGAACCTTCTCCT 59 NA Rattus norvegicus 81 4933416C03Rik ENSRNOG00000022632 ENSRNOT00000032374 1 1 1 60 7 59139295 59139315 AAACCAAGGCAGTACAAAGTC 59 59139255 59139275 CCTACTTCAGAGGGTAATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med17 ENSRNOG00000010496 ENSRNOT00000014435 1 1 1 80 8 13827959 13827980 TTCAGATTAAGTCTCAGATCCC 57 13827156 13827918 TAGACAACTGCAAGCTTGG 58 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000074904 1 1 2 92 9 9931792 9932155 AGATACAGGAAGAGGCCCA 60 9931500 9931518 CATCCTCGTCCATCTGTCC 60 NA Rattus norvegicus 81 Olr1458 ENSRNOG00000049953 ENSRNOT00000044769 2 1 1 60 10 44774987 44775006 TTCTACTTGCTCCTCTCACC 59 44775029 44775047 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1458 ENSRNOG00000049953 ENSRNOT00000044769 3 1 1 60 10 44774988 44775006 TCTACTTGCTCCTCTCACC 58 44775030 44775048 ACACAAAGCTTCCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst7 ENSRNOG00000004258 ENSRNOT00000005630 2 1 1 86 X 2655607 2655625 GAGACACCACTGGAAACCA 60 2623712 2655559 AACCACTGACCTAGATATGCC 59 NA InUTR Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 2 2 2 94 3 119676287 119676305 AATGAGGTCAAGTCAGTGG 57 119676111 119676230 TCTTCATCAACTTCCCAGAC 57 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100,ENSRNOT00000082712 1 2 2 80 16 32415914 32415932 AGACCATCAGTCAACTCCA 58 32411467 32415870 TGCAATAAGCTGAGGTGAG 58 NA Rattus norvegicus 81 LOC100362109 ENSRNOG00000030150 ENSRNOT00000048614 3 1 1 136 7 123296378 123299711 AGGAACGTCACTAAGGTGC 60 123299810 123299829 TGTATCCACTGCTGGATGTG 60 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110,ENSRNOT00000047831 2 2 2 80 1 171939609 171939627 AAATCGAGCGTCTTCACAG 58 171939670 171941366 GGTGGATTTCTTGATCTCGT 58 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837,ENSRNOT00000071076 1 2 2 80 11 84534770 84534789 AGCTTCTCAACTAGCATCGT 59 84534829 84535734 ATTCGAAATAACACCTGCAGAC 59 NA Rattus norvegicus 81 Mir708 ENSRNOG00000040447 ENSRNOT00000062200 3 1 1 60 1 161221254 161221275 TCAAGGAGCTTACAATCTAGCT 59 161221292 161221314 CACAGTCTAGTTGTGTTCAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atraid ENSRNOG00000006326 ENSRNOT00000066743 2 1 1 80 6 26682064 26682292 CTGCAGACTCTGATACTACC 57 26682003 26682024 GTCCATGAAAGAAGTAACACTG 57 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 3 2 2 82 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797741 11797760 GTCCATCTCATCGAAGAGGA 59 NA Rattus norvegicus 81 Mmp7 ENSRNOG00000010507 ENSRNOT00000014041 3 1 1 80 8 5896510 5896530 CAGATGTTGCAGAATTCTCAC 58 5896569 5896675 TATAGGACACGATTCTGTAGGT 58 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 3 2 2 81 2 243845980 243848807 TTGGCTAGAGACACTGCTG 59 243848851 243848870 AACATTGACAACAGCTCCAC 59 NA Rattus norvegicus 81 Cfp ENSRNOG00000025811 ENSRNOT00000038909 2 1 1 85 X 1314257 1314515 CTTGCCCTGTAAATGGAGAG 58 1314563 1314581 TTCATCACAGCTGATGGAC 58 NA Rattus norvegicus 81 Dicer1 ENSRNOG00000010711 ENSRNOT00000014405 3 1 1 80 6 128431232 128432149 TTTACTAAGCACCAGGTTCTC 58 128431172 128431193 GTCTGACAGTGATAAGTAACCA 58 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779,ENSRNOT00000084590 2 2 2 80 9 93933453 93936075 CCAGAAATCAGCAAAGGTGG 60 93936118 93936136 TCAGCCAAGAGTTTCAGGA 59 NA Rattus norvegicus 81 Palldl1 ENSRNOG00000042312 ENSRNOT00000064850 1 1 1 99 16 31367861 31367879 TCATCCAGAAGCTGAGGAG 59 31367942 31386868 CACAACGAACTGACTCTGG 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000019853 1 2 4 86 7 117709548 117711085 CTACACAGAGGTTCAGTTCC 58 117709481 117709499 TTCAGTACTGTGAACCGTG 57 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019876 1 1 4 85 7 117721920 117721938 GAATGAATGGAGCACTGCC 59 117721678 117721872 CTCGACTGGACTGTACAGAG 59 NA Rattus norvegicus 81 Nt5m ENSRNOG00000003332 ENSRNOT00000004448 1 1 1 80 10 46228860 46241102 GTCCCTATGAGAAGTATGCC 57 46241145 46241163 TCTTGTCTCTGGTCAACAC 57 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 3 2 2 80 8 112594961 112603933 ACTCAATACAGATCAGGACAG 57 112603975 112603993 TGGTTTCTTCCTGAGAACG 57 NA Rattus norvegicus 81 Fam110c ENSRNOG00000005660 ENSRNOT00000007466 1 1 1 84 6 49969424 49969442 TGTTTACCTGCAAGAAGGC 58 49969490 49972653 AGTTTGCTTCCTGGATCAG 57 NA InUTR Rattus norvegicus 81 AABR07072054.1 ENSRNOG00000046546 ENSRNOT00000019751 2 1 1 80 1 259978705 259978723 CGACAGTGTCTCCTCTCAG 59 259978767 259981745 GATGCCTTTACCTCCTCCC 60 NA Rattus norvegicus 81 Tatdn2 ENSRNOG00000042482 ENSRNOT00000038964 1 1 1 95 4 145665577 145665596 CTTGGTAATTCACTGCCGTG 60 145665654 145667760 GTGAAGCAGTGCCTATGGA 60 NA Rattus norvegicus 81 Sgpp2 ENSRNOG00000037695 ENSRNOT00000018882 1 1 1 81 9 84203111 84203129 GAGCCTGAGGGATTCAGAG 59 84203174 84254661 CTTCTCACCAGAAGCCTCC 60 NA Rattus norvegicus 81 Kcnn3 ENSRNOG00000020706 ENSRNOT00000028117 2 1 1 80 2 188886933 188886954 TGCCTTATCAGTTTATCCACCA 60 188886992 188931534 GATCACAAAGAGCTGTACTTCC 59 NA Rattus norvegicus 81 AC095959.2 ENSRNOG00000061898 ENSRNOT00000087272 2 1 1 60 3 78154500 78154521 CTGGCTTTCTTGTCTTTACTGG 60 78154461 78154481 CAATCATCTTGGGTGTCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc6 ENSRNOG00000017367 ENSRNOT00000023319 3 1 1 60 1 51621519 51621538 AGCATCTTAATACACAGCCA 57 51621561 51621579 TTACCTTGGGCAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp503 ENSRNOG00000014237 ENSRNOT00000019644 2 1 1 98 15 2375290 2375308 TACACCCAGAGTATCTGCA 57 2376058 2376076 AACATGTTTGAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909831 ENSRNOG00000054293 ENSRNOT00000074870 3 1 1 60 3 73636390 73636411 CCTGATCATCCTTACAATGGTG 59 73636351 73636371 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000084293 1 1 2 112 5 107825387 107825406 GTCCAAAGTTGCAGCTCTC 59 107825292 107825310 GAGTGTCTAGGAAGCCCTC 59 NA Rattus norvegicus 81 Gjb5 ENSRNOG00000059897 ENSRNOT00000081919 3 1 1 60 5 145423115 145423133 AACAAGTACTCCACAGCCT 59 145423073 145423091 GCACACGGAAGACAAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap4e1 ENSRNOG00000022938 ENSRNOT00000037390 3 1 1 80 3 119524949 119525530 TTGGCTGAGAAATATGCTCC 58 119525572 119525591 CATTACATCTCCTCCCACTG 58 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 1 2 2 80 15 4002876 4003022 TGCTTAATCCGATCAGTGTC 58 4003065 4003083 GGCTCTCAAAGGTGTACAG 58 NA Rattus norvegicus 81 Abhd16b ENSRNOG00000015067 ENSRNOT00000020210 3 1 1 60 3 176986861 176986882 TTTATGGCTGGTCTATAGGAGG 59 176986902 176986921 AGTTCTGGGTAAGTCATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500956 ENSRNOG00000020580 ENSRNOT00000027949 3 1 1 82 8 21892888 21893036 ATATCCAGGCAGTAGCCAC 59 21893082 21893100 GATGAGGTCATCTTGGGCT 59 NA Rattus norvegicus 81 Ndp ENSRNOG00000046042 ENSRNOT00000074275 3 1 1 82 X 6273886 6281568 AAATGTAGCTCAAAGATGGTGC 60 6281611 6281629 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Sgip1 ENSRNOG00000006357 ENSRNOT00000064567 2 1 1 80 5 122483519 122485958 ACTTCTCTGCTGTGATAATACG 58 122485998 122486017 AGGTGAGTCATCAGATTTGG 57 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000044591,ENSRNOT00000002496 2 3 3 80 11 80933916 80933934 AAGGACAGTTTGTACACCG 58 80932611 80933876 CTGATACCACTTTGGGATATCTG 59 NA Rattus norvegicus 81 Cops8 ENSRNOG00000019635 ENSRNOT00000026581 2 1 1 80 9 97775550 97779014 TGGAAGCCCTTAGAGATGC 59 97779058 97779076 AGTCGTCTGCGATTATGGA 59 NA Rattus norvegicus 81 Fam26d ENSRNOG00000000580 ENSRNOT00000000708 3 1 1 80 20 27575914 27577697 GGTATCAGTCACAGATGCTG 58 27575853 27575872 ATCTCGCCAGACATTTAGAG 57 NA Rattus norvegicus 81 Csn1s2b ENSRNOG00000055083 ENSRNOT00000087672 1 1 1 80 14 21908311 21909595 GCTCCCATAAAGAACAAATGCT 60 21908252 21908276 GTGATATTGATAAAGACCCTTGAGG 60 NA Rattus norvegicus 81 LOC100363012 ENSRNOG00000033916 ENSRNOT00000051693 2 1 1 60 5 159606779 159606798 GTCCATCCAGATGAATGTGG 59 159606819 159606839 AAACTGACCATTAAATCGGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364191 ENSRNOG00000030447 ENSRNOT00000041753 1 1 1 60 5 173149058 173149078 GGGAAGATTGTTGTGAACCTC 59 173149096 173149118 ATCTAGGGCTTATAACTCCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc47a1 ENSRNOG00000057404 ENSRNOT00000086579 2 1 1 80 10 47647808 47647826 TGTGACCTTCTGTGTCCTG 59 47641361 47647765 AAGGCCACAATATCCCAGTC 60 NA Rattus norvegicus 81 LOC100361180 ENSRNOG00000048927 ENSRNOT00000013868 2 1 1 87 15 64190774 64190792 TCTGGACTTTGGCAGTCTC 59 64190606 64190723 TTAAACAGCTCCACGTGGT 60 NA DesignNoJunction Rattus norvegicus 81 AABR07017830.1 ENSRNOG00000046356 ENSRNOT00000071642 2 1 1 96 15 31579510 31579646 GCTCCTCATCCTCACAAGG 60 31579700 31579724 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Olr575 ENSRNOG00000046025 ENSRNOT00000049264 1 1 1 60 3 75712831 75712851 ATGGCCTTTGATAGATACCAG 57 75712870 75712891 TGGACATGTTTACTGTGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366231 ENSRNOG00000048244 ENSRNOT00000074040 3 1 1 80 1 147063966 147063986 TAAATGCCTCTTTCAGAAGCC 59 147063180 147063925 ACTTAAGCTCCTCCCTTGAG 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214,ENSRNOT00000038264 2 2 2 80 13 103307582 103307601 CTACTTGGCTAGAGTTGCAG 58 103307642 103308828 TCCAACCAATGATCAATCTCC 58 NA Rattus norvegicus 81 LOC100361067 ENSRNOG00000022652 ENSRNOT00000011446 2 1 1 60 10 65835874 65835894 GAATATGCTATGAAGGCTGTG 57 65835834 65835853 CGTCTTTACATCTGATCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000082582 3 1 2 177 1 107345219 107362386 GATAAGAGAATGATGCTGCAC 57 107362525 107362543 CTGGGTTCATGTCCTTCAG 58 NA InUTR Rattus norvegicus 81 Olr515 ENSRNOG00000032722 ENSRNOT00000050404 3 1 1 60 3 73989631 73989652 ATTCATCCTCTTTGCCATTCTG 59 73989671 73989691 AGAGAAGACTTTCCTCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1620 ENSRNOG00000030687 ENSRNOT00000047008 3 1 1 60 15 27401458 27401479 GTGGTTGCATTATTCTATGGCT 59 27401499 27401518 CATGTTCAGATGTTGGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsen54 ENSRNOG00000004598 ENSRNOT00000006327 1 1 1 80 10 104360424 104361681 CAATATCAGGTCTTCAGCCA 57 104363974 104363992 GTAAGGTGACACGACTGAG 58 NA Rattus norvegicus 81 RGD1560771 ENSRNOG00000042103 ENSRNOT00000066351 2 1 1 60 15 32412627 32412648 GATCTCAGAGGAAAGATGAAGG 58 32412588 32412609 GTTTCTGGTTGTAGGATTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rela ENSRNOG00000030888 ENSRNOT00000045233 3 1 1 81 1 220994893 220994911 GTGTGAAGAAGCGAGACCT 60 220994953 220995300 TCCTCTATGGGAACTTGAAAGG 60 NA Rattus norvegicus 81 Cirh1a ENSRNOG00000020333 ENSRNOT00000027553 2 1 1 80 19 39105949 39105968 CCTATTCTACAGCGTCTCGG 60 39106009 39107341 ATTTGGAAACTCTTTGGAGGC 59 NA Rattus norvegicus 81 Ctsa ENSRNOG00000015857 ENSRNOT00000066028 1 1 1 80 3 161302439 161302459 CTCAACAACCCATATGTTCGG 59 161302501 161303054 GTTCACCATGAGGTTGCAC 60 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 1 3 3 80 4 147361931 147372230 GATGTCTCACAATGCCATCAG 60 147372271 147372290 ATATCACTGGAGATCTCCGC 59 NA Rattus norvegicus 81 LOC688970 ENSRNOG00000028913 ENSRNOT00000058760 1 1 1 80 17 89452829 89453136 GCTGAGATCAGCCATATAAAGG 59 89453172 89453195 AGTGGTAAAGTTCTCGATAGAGTC 60 NA Rattus norvegicus 81 Trim52 ENSRNOG00000024509 ENSRNOT00000020876 3 1 1 104 15 90364638 90364732 TCATTTCCAGGCTCCAGTC 59 90365524 90365542 AAGTGACTGCATAGGGCTG 60 NA InUTR Rattus norvegicus 81 Fkbp9 ENSRNOG00000005478 ENSRNOT00000007821 2 1 1 80 4 87230636 87230654 GTGAAGTGTCTCCCAACCT 59 87230696 87232859 TGTACTCTGAGAACTCCTCCA 60 NA Rattus norvegicus 81 Mir217 ENSRNOG00000035518 ENSRNOT00000053641 2 1 1 60 14 113119559 113119578 ATACTGCATCAGGAACTGAC 57 113119600 113119619 AGGCAATGCATTAGGAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alx3 ENSRNOG00000018290 ENSRNOT00000024611 1 1 1 81 2 210382083 210382101 AACCCACTACCCTGATGTG 59 210382146 210385446 GAACCAGACCTGTACCCTG 59 NA Rattus norvegicus 81 LOC100910046 ENSRNOG00000018885 ENSRNOT00000032933 1 1 1 80 1 84584758 84584779 CTTACTAGAGCAGGAGAAAGAG 58 84584819 84592420 AAACATGTCTCCAAACCTGG 58 NA InUTR Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 2 2 2 99 1 212539865 212539884 CTTTGCTATGGCACTTCTGG 59 212538619 212539804 GATCTTGTGCCGAAGTAGGA 60 NA Rattus norvegicus 81 Lrwd1 ENSRNOG00000001429 ENSRNOT00000001940 2 1 1 80 12 23586851 23586871 TGGATCTACGATGTTGAACAC 58 23586913 23587025 CTTCAGGATCTGTGTTGGG 58 NA Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 2 1 1 128 19 56311846 56311865 TAGTCATCAGAGCAATTGGG 57 56306701 56311761 GTACCTTGACTTCTTTAGTGATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Calb2 ENSRNOG00000016977 ENSRNOT00000022943 1 1 1 80 19 41504246 41505854 CTTCACATTCTATGACAAGGATGG 60 41505889 41505911 TTCTCATACAGATCCTTCAGGAG 59 NA Rattus norvegicus 81 Oaz1 ENSRNOG00000019459 ENSRNOT00000026341 3 1 1 60 7 11752947 11753043 CATCCTGTACTCCGACGAG 59 11752905 11752923 GGTCTTGTCGTTAGACGTC 58 NA DesignRelaxed Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 3 2 2 80 9 74234374 74235275 CACCAATTTCCAGGTGACC 59 74235317 74235337 TAGTGGAACAGACTCTTGGAG 59 NA Rattus norvegicus 81 Cog3 ENSRNOG00000000155 ENSRNOT00000000168 3 1 1 80 15 57779627 57779648 GACATCACAGGCTATAAACCAG 59 57777838 57779586 ACTCTGTGCAATTTGCTCC 59 NA Rattus norvegicus 81 Lrtomt ENSRNOG00000023434 ENSRNOT00000039564 2 1 1 81 1 166987835 166987855 CATCCTCACAACTCTAGACCA 59 166987081 166987798 CATCAGAATCTGACCTTTAATAGGG 59 NA Rattus norvegicus 81 Nyx ENSRNOG00000009646 ENSRNOT00000013382 1 1 1 93 X 10199287 10218067 GCTTCTTTATGCGGTGGTC 59 10199212 10199230 CACGTTACTGCAAGTGCAG 60 NA Rattus norvegicus 81 Pmaip1 ENSRNOG00000018770 ENSRNOT00000025362 3 1 1 135 18 62176728 62176748 ATAAAGTGTACTGCACGTGGA 60 62176845 62178749 CACTCGTCCTTCAGGTCTG 60 NA Rattus norvegicus 81 Tigd2 ENSRNOG00000038449 ENSRNOT00000058581 2 1 1 60 4 89538130 89538149 AACAGGATGACATGCTACTC 57 89538171 89538190 CTTATAATGGTCCGAAGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnaja1 ENSRNOG00000007029 ENSRNOT00000010061 1 1 1 82 5 57038031 57038338 CACCTCTCATCCAGGTCAG 59 57038384 57038402 ATGGCCGACGGTATATTGG 60 NA Rattus norvegicus 81 Gprin3 ENSRNOG00000023657 ENSRNOT00000039316 1 1 1 60 4 89695334 89695352 ACCCACCAAATACTAGCAC 57 89695292 89695310 TTTGCCTCTGATTTCACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000078355 1 1 3 60 20 3317550 3317571 GACAAGATTTCTCATTCCAGCA 59 3317589 3317610 CTCAAACTAACAAAGATCCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdhd1 ENSRNOG00000025422 ENSRNOT00000037904 2 1 1 60 18 45380530 45380548 GAAGAAGGCTCCAGAAACC 58 45380488 45380508 TTTGGAAATGGGCAACTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 2 1 1 60 7 75288031 75288051 ACCATCCAGTTCTTAGTTTCC 58 75286869 75288009 TAGCACCTTGATGATTGCA 57 NA DesignNoJunction Rattus norvegicus 81 Il20ra ENSRNOG00000012286 ENSRNOT00000050656 2 1 1 81 1 15211502 15212730 TCCTTTCTTGGAAACACAAGTC 59 15212772 15212790 TGCTGTCAGGGCAATAGAG 60 NA Rattus norvegicus 81 Ap1s1 ENSRNOG00000001415 ENSRNOT00000001918 2 1 1 92 12 22668216 22669232 GTTGTCTATAAGAGATATGCCAGTC 59 22669282 22669300 GTATCGGTGGATCAGCTCC 60 NA Rattus norvegicus 81 Olr496 ENSRNOG00000045634 ENSRNOT00000013038 2 1 1 60 3 73933549 73933570 TGTTCTTGTGTCTTACCTCCTC 60 73933510 73933529 GCCCTCAGTAGAGTTCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr496 ENSRNOG00000045634 ENSRNOT00000013038 3 1 1 60 3 73934101 73934125 TGTACTGTTCCTCATCATCTATCTG 60 73934065 73934089 GAGTATAATCATGCCCATATTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkmyt1 ENSRNOG00000003657 ENSRNOT00000004936 2 1 1 90 10 13070489 13070507 CTGCAATATGGAACTGCCC 59 13070561 13070706 AGAAGACAGACCAGCAGTG 59 NA Rattus norvegicus 81 Nr2c2 ENSRNOG00000010536 ENSRNOT00000014353 2 1 1 80 4 124025308 124026253 CTCTTTAGTCCCGATCATCC 57 124026295 124026314 TTGTAATTCCATCTGTGCCT 57 NA Rattus norvegicus 81 Mir199a2 ENSRNOG00000036364 ENSRNOT00000054483 3 1 1 60 13 80125524 80125544 TTCAGACTACCTGTTCAGGAC 59 80125566 80125584 CCCAGTCTAACCAATGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1598 ENSRNOG00000046866 ENSRNOT00000048222 2 1 1 60 13 92359083 92359101 CACACTCATAGCTGTTCCA 57 92359123 92359143 TGTGAATATGATGGGACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970,ENSRNOT00000085403 3 2 2 80 8 79673677 79673697 ACTCCAGAATATTCCTCACCA 58 79673739 79674088 GTTTGCACTGCTTTCTCCA 59 NA Rattus norvegicus 81 Notch1 ENSRNOG00000019322 ENSRNOT00000026212 1 1 1 80 3 3927360 3927378 ATGTCAGAATGATGCCACG 58 3926983 3927319 CAGTATACACCCTCATAACCTG 58 NA Rattus norvegicus 81 LOC100360333 ENSRNOG00000042026 ENSRNOT00000067020 2 1 1 60 17 5311904 5311925 TCTCATCTACACTCCTCTAGCA 60 5311945 5311964 GTGTCACCATGTACTTTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clptm1 ENSRNOG00000018255 ENSRNOT00000024779 1 1 1 80 1 80554165 80554881 GGAAATGATCAAGAGGGCTG 59 80554104 80554125 ACGATATTGATGGTGATGTTGG 59 NA Rattus norvegicus 81 Lima1 ENSRNOG00000059801 ENSRNOT00000091702 1 1 1 80 7 141494713 141494734 GTAACAGCCAAAGAACTTTCTC 58 141477763 141494672 TGCTTTCTGGTACTTGGAG 57 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 1 2 2 80 10 49191268 49191287 ACTACGATTCGGAAGATGGG 59 49188371 49191225 TGGTTTCCACGTCTGAGTC 60 NA Rattus norvegicus 81 Hnrnpa0 ENSRNOG00000039876 ENSRNOT00000061231 1 1 1 66 17 6910016 6910034 GTGAAGAAGCTGTTCGTGG 59 6910064 6910082 AGAAGTGCTCGATCAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rwdd1 ENSRNOG00000042916 ENSRNOT00000068777 3 1 1 85 20 27535611 27538493 AATTCCTGGAGGATGCTGG 60 27535544 27535563 CTCACCATCTTCTAGCTCCA 59 NA Rattus norvegicus 81 Alpi ENSRNOG00000030020 ENSRNOT00000026190 1 1 1 80 9 94200599 94200617 AACTGGGTGGTCATCTAGG 58 94200383 94200557 CGTTGTATGTCTTGGACAGAG 59 NA Rattus norvegicus 81 Alpi ENSRNOG00000030020 ENSRNOT00000026190 2 1 1 80 9 94200599 94200618 CAACTGGGTGGTCATCTAGG 60 94200384 94200558 GTTGTATGTCTTGGACAGAGC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340,ENSRNOT00000007710 3 2 2 80 5 86498398 86498417 GAGAAGCTGAGACTAGAGCG 60 86480567 86498357 TCTAAGGTCATGGATGGTTCG 60 NA Rattus norvegicus 81 Vom1r9 ENSRNOG00000054409 ENSRNOT00000079558 3 1 1 60 1 60248753 60248771 CCAGGAATTTGGGAGTAGG 57 60248792 60248813 TTTCCTAGAAGTCCAACTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprc6a ENSRNOG00000000401 ENSRNOT00000000451 1 1 1 80 20 32619425 32619445 GCTGGCTACTCTGAAATATCC 58 32618939 32619385 AGTGGATTCATAACTCACCTG 58 NA Rattus norvegicus 81 AABR07032229.1 ENSRNOG00000048302 ENSRNOT00000073388 1 1 1 60 18 55464327 55464348 ATGTTTGAAGCAGAGGATTTGG 60 55464368 55464387 AGGGAGGATTCTCAGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fetub ENSRNOG00000001806 ENSRNOT00000048739 3 1 1 91 11 81656713 81656731 GACGTCTTAGAGACTGGCT 59 81655075 81656659 CACTGTCCATGAACAGTCTC 58 NA Rattus norvegicus 81 Upk3bl ENSRNOG00000038896 ENSRNOT00000059451 2 1 1 80 12 23655239 23657123 GTCATATCTGCTTGTTGCTC 57 23655178 23655196 ATGATGCGTGTGATATCGT 57 NA Rattus norvegicus 81 Nek11 ENSRNOG00000042432 ENSRNOT00000046816 3 1 1 80 8 113787960 113830867 ACATTATGAGATCCCAGAAGAC 58 113787901 113787919 CCACTGTCTTCAGAACAGG 58 NA Rattus norvegicus 81 Skida1 ENSRNOG00000033330 ENSRNOT00000040697 3 1 1 81 17 84828972 84828990 TCCAGTTTGTCAGCTCCAG 60 84828907 84828927 TCTTCCTCCCTTTCCTCCT 59 NA Rattus norvegicus 81 Serpina4 ENSRNOG00000009788 ENSRNOT00000013045 3 1 1 80 6 127747185 127749483 ATCTTCTTCCAAGGTCTTTGG 58 127749520 127749543 CGTGTTCTCATCTACATAGAAGTC 59 NA Rattus norvegicus 81 Tmcc2 ENSRNOG00000000033 ENSRNOT00000000036 3 1 1 80 13 49136605 49136624 GAGGACTTGAAGACTCAGCT 59 49135266 49136562 CCTCTCATACCTGTAGCGC 60 NA Rattus norvegicus 81 Pagr1 ENSRNOG00000020217 ENSRNOT00000027392 2 1 1 84 1 198449235 198449980 AAGACGTACACCAGGAAGC 60 198449169 198449190 CTTATGTCGCTTCATGTCTGAG 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 3 2 2 80 4 85127670 85129420 CTGAAGCATTTATGGCTAATCC 58 85127611 85127629 GGTATTCTTCTGCAGTGCC 59 NA Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 3 2 2 80 6 132104697 132105483 TTGTAAATGACAGTCTCTGCAC 59 132105523 132105542 CCGCAAGATACATTACTGCA 59 NA Rattus norvegicus 81 RGD1563145 ENSRNOG00000029227 ENSRNOT00000051343 1 1 1 60 3 155192366 155192385 AGGAACTTAAATTGGCCACG 59 155192325 155192343 TTGTACACATTCCGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankzf1 ENSRNOG00000019052 ENSRNOT00000032419 1 1 1 80 9 82396037 82396058 AACAACGTCTCAAGAATAAGCC 59 82396097 82396239 AGATGCTGGAAAGATCTCCTC 59 NA Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000042418 1 1 2 80 4 147924635 147948459 GAGCGATATAGATGTGAACGAC 59 147924576 147924600 CTTTAAGTTCAGGATCTCATTCTGG 60 NA Rattus norvegicus 81 LOC100359766 ENSRNOG00000049553 ENSRNOT00000074483 1 1 1 90 15 29623448 29623560 TTCTCATGAGAGTTGCCCA 59 29623376 29623394 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Olr711 ENSRNOG00000057839 ENSRNOT00000089672 2 1 1 60 3 78555092 78555110 CTCTTGTTGGTGGTGTCCT 60 78555050 78555070 CAGAGATCACTTGAAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipg ENSRNOG00000018694 ENSRNOT00000025257 1 1 1 80 18 70924383 70924401 AGCCTCTATTGTTGCTTCC 58 70920638 70924340 GGGTTTATGGTGCTCATCTC 59 NA Rattus norvegicus 81 Dhrs4 ENSRNOG00000018239 ENSRNOT00000024782 3 1 1 80 15 34156912 34161458 AAGCTGGTAAACATGGCTC 58 34161501 34161520 TCCAAAGAAAGGGTTGACAG 58 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530,ENSRNOT00000003438 1 2 2 89 17 90699338 90701030 AGGATCTTACCAATCCTGGG 59 90701080 90701100 CATCACTGTCATATCTTCGGG 58 NA Rattus norvegicus 81 Eda ENSRNOG00000032208 ENSRNOT00000076977 2 1 1 60 X 69730767 69730785 ACCAGGAGAAGATCCACTC 58 69730809 70131327 ATTCAGGAGTGCCATCTGG 60 NA DesignRelaxed Rattus norvegicus 81 LOC100912374 ENSRNOG00000048206 ENSRNOT00000074807 1 1 1 60 5 69215115 69215134 CACACCCATGTACTTCTTCC 58 69215154 69215175 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 3 2 2 80 4 6297917 6298026 GACCTTTGGGAAGAACAATCG 60 6297857 6297876 CCCTTCTGATCCATCTGGTC 60 NA Rattus norvegicus 81 LOC100271845 ENSRNOG00000042706 ENSRNOT00000066652 3 1 1 60 1 196738069 196738089 CTATGAAGCCGATGAGGAGAG 60 196738111 196738129 CCTCACTGTTTGCTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr37 ENSRNOG00000002524 ENSRNOT00000003593 1 1 1 80 4 51842547 51842566 CATCTTCCATGAGTTGACCA 58 51823499 51842507 AGAGAAGCTACCTCGATATAGG 58 NA Rattus norvegicus 81 AC098125.1 ENSRNOG00000012898 ENSRNOT00000017200 3 1 1 95 1 229835046 229835068 GTGCATTCATACTTGGGACTG 59 229835124 229835143 CCAGGTTCCCAATTAGTGTG 59 NA Rattus norvegicus 81 AABR07055485.1 ENSRNOG00000053774 ENSRNOT00000045977 3 1 1 81 7 4066704 4066773 CTACCTGTTCTTACATCAAGCC 59 4066644 4066664 GCAATGGAAGTAGTGAGAACC 59 NA Rattus norvegicus 81 Grm7 ENSRNOG00000005662 ENSRNOT00000056570 2 1 1 80 4 143076852 143086089 ACTTCAATGGTAGTGCTGG 58 143086130 143086151 GGTATTGGAAGATGTCATAACG 57 NA Rattus norvegicus 81 AABR07061254.1 ENSRNOG00000038024 ENSRNOT00000057854 1 1 1 60 4 112357325 112357343 GAAGTCAGGATGGTTGCAG 59 112357283 112357301 GCCCTTTGTATTCCAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061254.1 ENSRNOG00000038024 ENSRNOT00000057854 3 1 1 60 4 112357327 112357345 GAGAAGTCAGGATGGTTGC 58 112357285 112357306 CCTTTGTATTCCAACCTACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 2 3 3 80 11 73714989 73715010 TAGAGCTCTTCAAGAAACTCCA 59 73715051 73716615 CATTAGGGTAGCCCACCAG 60 NA Rattus norvegicus 81 Ep300 ENSRNOG00000000190 ENSRNOT00000000206 1 1 1 80 7 122849481 122852262 ATGAACAACATGAGTGCCAG 59 122852301 122852323 CATGGAGTCAGAAAGAAGATTCG 60 NA Rattus norvegicus 81 Acy3 ENSRNOG00000017901 ENSRNOT00000024112 3 1 1 81 1 219235122 219235499 TACCTACAGCTGCAGAACC 59 219235540 219235562 AATCCATACTGTAGGACTCTGTC 59 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 1 2 2 80 2 259382705 259382723 TTTATCCTGGCCATGGACG 60 259381632 259382661 ATACCCTTCTGTCGTGCAG 60 NA Rattus norvegicus 81 Olr1660 ENSRNOG00000057176 ENSRNOT00000086536 1 1 1 60 17 45670703 45670722 GAAGATGGTTCTGTCAGCCT 60 45670742 45670763 CAAGGGACAAAGAATTAAGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017,ENSRNOT00000087305 1 2 2 80 13 109459853 109459872 GAGGACCTGCTACAGTTCTC 60 109457303 109459813 TATCCCACCCTTAAAGAAGTCC 59 NA Rattus norvegicus 81 Xpnpep2 ENSRNOG00000004009 ENSRNOT00000005604 2 1 1 80 X 134950330 134950348 ACCGATAGTCGTTACTGGA 58 134950391 134950649 TGACGAAATGCTAACTTCCT 57 NA Rattus norvegicus 81 Cfap54 ENSRNOG00000029837 ENSRNOT00000005492 2 1 1 80 7 33880152 33886903 AGTCTTCCAAGGCCTTAGAG 59 33880091 33880109 GGTACCTGACAGACAGGAG 59 NA Rattus norvegicus 81 Irf9 ENSRNOG00000019478 ENSRNOT00000026364 2 1 1 80 15 34286448 34287413 CTTCTGTAGAGATTTGGCCC 58 34287456 34287474 CTGTCCCAGAAATGCAGTG 59 NA Rattus norvegicus 81 Mir30b ENSRNOG00000053467 ENSRNOT00000079419 1 1 1 60 7 109282715 109282739 CAGTTCATGTAAACATCCTACACTC 60 109282679 109282697 AAACATCACATCCCAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530,ENSRNOT00000080068 2 2 2 107 12 22973725 22974961 CAAAGCCATCTGGTGAACC 59 22978250 22978268 TCTCTGCCAGGATCTTCAG 59 NA Rattus norvegicus 81 Capn7 ENSRNOG00000019273 ENSRNOT00000026323 1 1 1 80 16 7466057 7467850 AAGTCTATTACCCAGCTGACC 59 7467886 7467910 GCTTTATCTTAGTCAAGTAGTGAGG 59 NA Rattus norvegicus 81 Ccdc74a ENSRNOG00000001876 ENSRNOT00000002567 1 1 1 80 11 87552595 87552613 CAAGTCACTCCTGGAAGGG 60 87552657 87552749 GAGTCCTGGTCCTTTGGAG 59 NA Rattus norvegicus 81 Gtf2h4 ENSRNOG00000000831 ENSRNOT00000083556 3 1 1 80 20 3587445 3587588 GATGCTCAAACAGACTCCTG 59 3587631 3587649 CGAAGTCTGTCCCTTTCCA 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 3 2 2 80 8 5686591 5688287 AGATGATGTCACAGGTACCA 58 5688330 5688348 TTGGCTGAGTGAAAGAGAC 57 NA Rattus norvegicus 81 LOC499823 ENSRNOG00000029652 ENSRNOT00000046112 3 1 1 80 3 71445699 71445815 GAGGGTTCCAGAAGATCTGG 60 71445855 71445876 ACAGGATCCTTCTGATATCTGC 60 NA Rattus norvegicus 81 Olig1 ENSRNOG00000028648 ENSRNOT00000002827 2 1 1 60 11 31428591 31428609 CACCCATCTCGTCATCCTC 60 31428633 31428651 GGTTTAGGGAGAAGGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grcc10 ENSRNOG00000025810 ENSRNOT00000019570 2 1 1 99 4 157265336 157265354 AAGATGCTGCAATTCGTGC 60 157264599 157265275 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 Cog8 ENSRNOG00000020379 ENSRNOT00000066312 2 1 1 81 19 39249689 39249710 GACCTTGTTCCTTATTTGAACC 58 39247108 39249648 TGGGTGAAATGCCTAAAGTC 58 NA Rattus norvegicus 81 Slain2 ENSRNOG00000002271 ENSRNOT00000003087 2 1 1 80 14 37837935 37837955 TATCCAAGTCCTGATGTGGAG 59 37828851 37837893 TTGCCTCTTGAGAGCTGAC 60 NA Rattus norvegicus 81 Gpm6a ENSRNOG00000010731 ENSRNOT00000014312 2 1 1 81 16 39382211 39382231 GCCATCAAAGATCTCTATGGG 58 39375808 39382171 GGTATGTCAGCATGATAAACCA 59 NA Rattus norvegicus 81 Mrps16 ENSRNOG00000006898 ENSRNOT00000009207 3 1 1 166 15 4352588 4352606 AGTTGCTCTCAACCTGGAC 60 4353515 4353537 CTAAGAAGACTTCTCTTGCTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr39 ENSRNOG00000030042 ENSRNOT00000050707 3 1 1 60 1 167588359 167588377 TGCTCTTCAGCTTCTCCAC 60 167588317 167588335 ATCTGTCCCAAGCATCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC123280.1 ENSRNOG00000033141 ENSRNOT00000049690 3 1 1 92 15 61875343 61875380 GGATCATTTCAGGCATCCC 58 61875269 61875288 GTAGAGCTACACTGTTTCCG 58 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 3 1 1 98 10 109786436 109786529 CAAGCGTAAGAAGCCTTGC 60 109786590 109786609 CCTTACACTGGAAAGTCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 2 2 2 81 16 7040466 7043926 CGGATTATTGAAGGAAAGTTGC 58 7043965 7043986 TGCTCAACATGGTTCTTATCAG 59 NA Rattus norvegicus 81 Ddah1 ENSRNOG00000014613 ENSRNOT00000045016 3 1 1 82 2 251724257 251729899 GTCCTATTCACAGGCAGAG 57 251729942 251729963 AAAGTATCAGCCAAGATCTCAG 58 NA Rattus norvegicus 81 Arih2 ENSRNOG00000031827 ENSRNOT00000042577 2 1 1 80 8 117398303 117398323 ATGGTTATTCGGGTACAGGAG 59 117395931 117398263 TCGACACTTGAAACAGAAGAC 59 NA Rattus norvegicus 81 Sipa1 ENSRNOG00000020726 ENSRNOT00000028137 3 1 1 81 1 221011508 221014192 CTAGATGAGCAAGTGCTGAG 58 221011446 221011464 ACATCTCTTCCTCAGAGCC 59 NA Rattus norvegicus 81 Klhl10 ENSRNOG00000016749 ENSRNOT00000022687 2 1 1 80 10 88364042 88364060 ACCAATGGACACTCATTGC 59 88364101 88372166 ATATGTAGACCTTCCCGTAGAG 58 NA Rattus norvegicus 81 Pnpla5 ENSRNOG00000022296 ENSRNOT00000039228 3 1 1 83 7 124996221 124996241 CCAGTTTCCAGATCTCTACCA 59 124994739 124996176 AATAGTCAGCCACCACCTC 59 NA Rattus norvegicus 81 Pcdhga8 ENSRNOG00000027277 ENSRNOT00000027009 3 1 1 60 18 30876759 30876777 GCCTGGATACCTAGTGACC 59 30876801 30876819 CCAAGCATTCTGTCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565607 ENSRNOG00000043303 ENSRNOT00000023213 2 1 1 60 1 169720999 169721019 TTCTCCTGCTAGTGTTAAACC 58 169720959 169720978 ACTACCCTGTTCAACTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dach1 ENSRNOG00000008834 ENSRNOT00000011926 2 1 1 80 15 82138920 82139393 TCTCCGGGTCTTAAATGACTC 59 82138860 82138879 ATTGTCCTTTCAGCATCTGC 59 NA Rattus norvegicus 81 Parvg ENSRNOG00000052064 ENSRNOT00000085216 2 1 1 80 7 125305026 125305471 CCATCAACCCTGAAGATATTGTG 60 125305508 125305529 GTGAATGCTTCTGGAATAGTCC 59 NA Rattus norvegicus 81 Rtn2 ENSRNOG00000016603 ENSRNOT00000022528 3 1 1 80 1 80206108 80206818 TCTTGTCATCTTGGGAGTGG 60 80207613 80207632 ACATACTGGTCAATCTGGGC 60 NA Rattus norvegicus 81 Aasdh ENSRNOG00000002137 ENSRNOT00000002907 3 1 1 80 14 33635632 33635651 TTCTTGGGAAGAAAGGACAG 58 33635694 33636843 CTCTTCAGCTACCTGTTGC 58 NA Rattus norvegicus 81 Lrba ENSRNOG00000023453 ENSRNOT00000088188 3 1 1 80 2 185590991 185591011 AGGAGGACAGTTTGATTTGGA 59 185591053 185591072 CACTTCTCCAGTACCACCA 59 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529 3 1 3 80 20 3980906 3981959 AAGAACCCAACAGGTTCCA 59 3982000 3982021 GTTCAGCTTGTCACTAATGGAC 60 NA Rattus norvegicus 81 Scfd2 ENSRNOG00000026828 ENSRNOT00000038506 3 1 1 82 14 36498014 36516094 AATAGTACCCATCAGGCAGC 60 36516139 36516157 ATGGGATCTGGCTTCTCAG 59 NA Rattus norvegicus 81 Olr349 ENSRNOG00000057094 ENSRNOT00000080145 2 1 1 60 1 229927866 229927884 TCCAGGATTACAGCTTCCC 59 229927824 229927847 TATCATGGTGATGGTGTAGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr349 ENSRNOG00000057094 ENSRNOT00000080145 3 1 1 60 1 229927404 229927425 TGTCCATCATTTCTTCTGTGAG 59 229927365 229927385 ATGTCTGTCAGAACACGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324,ENSRNOT00000015516 3 2 2 113 6 127647472 127649516 AAACTGTCTCCAGGGTATCG 59 127647378 127647396 CTGACGTCATGTTCAGGGA 59 NA Rattus norvegicus 81 RGD1561916 ENSRNOG00000013320 ENSRNOT00000017903 2 1 1 80 5 57887254 57887273 ACACATGGAAGACAAGTCCT 59 57886315 57887213 TACCTGTGTCCTTGTACAGTC 59 NA Rattus norvegicus 81 Apold1 ENSRNOG00000007830 ENSRNOT00000010289 1 1 1 60 4 168752733 168752751 CAGAAACTGTCTGAGAGCC 58 168752774 168752793 GCTGCTCACTAAGTTCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp238 ENSRNOG00000004423 ENSRNOT00000005849 3 1 1 60 13 95590577 95590597 AACAACAGGGTACAGTATGAG 58 95590619 95590637 TTAAGACCGAGTCCTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 3 1 1 93 1 89409705 89416227 CTTCGCAACCATCTACAGG 58 89416284 89416302 GACAGTGTTGATCTCCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 3 2 2 80 10 88481375 88481395 AATAACTTTGAGAAGGCCCTG 58 88481435 88484514 GTCTAAGGCACTGATGATAGC 58 NA Rattus norvegicus 81 LOC100909473 ENSRNOG00000054359 ENSRNOT00000077211 3 1 1 60 4 87828293 87828312 GTGGTCATATACTGGGTGGA 59 87828331 87828353 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt112 ENSRNOG00000021132 ENSRNOT00000028695 2 1 1 89 1 222168213 222168337 CGGACACCTTAAACTTGGC 59 222168390 222168408 ACACATGGTGCATCTTCCT 59 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 2 2 2 80 20 32057974 32058875 TACCTGTGGCTAAGCTACC 59 32057912 32057932 GACATCCAGTTCTTTCTGGAG 59 NA Rattus norvegicus 81 Etnppl ENSRNOG00000045743 ENSRNOT00000074209 3 1 1 80 2 235753943 235753962 GGCATTGATTTGGTGAAGGA 59 235754000 235754341 GCCTTTCATCTCATAGATAACGTG 60 NA Rattus norvegicus 81 Wdr26 ENSRNOG00000003723 ENSRNOT00000005059 3 1 1 80 13 99506757 99509641 CTTTGGAATGTACAAACGGGA 59 99506697 99506715 ATTCCAGGCTACACTGGTC 59 NA Rattus norvegicus 81 Olr217 ENSRNOG00000050569 ENSRNOT00000041974 3 1 1 60 1 170915185 170915203 ACCCACTCATTTACAGCCT 59 170915143 170915163 CCCAGAACCCTTATTAAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r134 ENSRNOG00000027510 ENSRNOT00000030442 1 1 1 60 3 37147777 37147795 GTGAATGTCCACAGTTCCT 57 37147819 37147837 GTAGGATGCCCATGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2b21 ENSRNOG00000032004 ENSRNOT00000049175 3 1 1 83 1 83400037 83400055 AATCCTGAGCACTTCCTGG 59 83390335 83399990 ACAAACACGCTTTCCTGTG 59 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000091077,ENSRNOT00000038973 2 2 2 80 7 98440436 98440547 ACTATCAGATCACCATCACCA 58 98440587 98440607 CAATCTCAATGGTCACAACTG 58 NA Rattus norvegicus 81 Esco1 ENSRNOG00000014031 ENSRNOT00000033312 1 1 1 80 18 1819009 1819028 GTTCAGCTCCTAATCAGCAG 59 1816118 1818967 GATTTGGCGGTGTATCTCTG 59 NA Rattus norvegicus 81 Olr1662 ENSRNOG00000061218 ENSRNOT00000086807 2 1 1 60 17 45687455 45687476 GTTGAAATGTCTGTCTTTGCTC 59 45687416 45687439 GAATAAGGATGAGAGGTGTAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695,ENSRNOT00000086409 2 2 2 80 3 140078180 140078201 TGAATTGGACACTGAAATCGAG 59 140078239 140082465 GTCAAGTAATAGCCTCCTTCTC 58 NA Rattus norvegicus 81 RGD1564324 ENSRNOG00000042267 ENSRNOT00000067607 1 1 1 82 15 33822763 33822781 CCGATCTCTGTGAGGATGG 59 33822825 33823087 CACTGGTAAAGCCAATCAGAG 59 NA Rattus norvegicus 81 RGD1564324 ENSRNOG00000042267 ENSRNOT00000067607 2 1 1 85 15 33823585 33823603 ATTTCCTGGTGTGCATCAC 59 33823652 33825432 CTAGTGGTCCTTGTCCCAC 59 NA Rattus norvegicus 81 Hip1 ENSRNOG00000001448 ENSRNOT00000030497 2 1 1 80 12 24309710 24309728 GCCAGAAACTAGGAGAGCT 59 24309771 24311113 ATGCTTCTGTCCCTTCTTCC 60 NA Rattus norvegicus 81 Fzd8 ENSRNOG00000059244 ENSRNOT00000058837 2 1 1 60 17 63001323 63001341 AGAGCCTTGACAACCTACG 59 63001362 63001383 CCAATGAAGAGGTAGATGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ret ENSRNOG00000014751 ENSRNOT00000047685 1 1 1 80 4 150223972 150223990 CTGAGTGTGAGGAGTGTGG 60 150223312 150223930 TGGTGATCCCTTTACCATCTC 59 NA Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 1 2 2 80 3 120177348 120177366 GTTGGGAATGGAAACGGTG 60 120179048 120179836 GTTCTTTGCCTTTCTGAAAGC 59 NA Rattus norvegicus 81 Mrps5 ENSRNOG00000015192 ENSRNOT00000077337,ENSRNOT00000020451 3 2 2 82 3 120177346 120177364 CTGTTGGGAATGGAAACGG 59 120179048 120179836 GTTCTTTGCCTTTCTGAAAGC 59 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000008067 ENSRNOT00000010676 3 1 1 80 6 135535105 135536995 TGAGCGAGAAGAAAGTGAGG 60 135537037 135537056 TCTCTGTTTGGGTCGATGTC 60 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 2 1 1 102 4 108301667 108301960 AAAGGATTTCTGACCCAGC 58 108302026 108302044 CAGCCAGTGTAGACAGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358,ENSRNOT00000064249 1 2 2 80 2 260527411 260527525 TTTCTGGGATTGTAGGTGTC 57 260527568 260527586 TTAAACTCGTTGGTCCCTC 57 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055,ENSRNOT00000080035 3 2 2 80 13 47962050 47962069 CCATACAGGAGATCAAGCAG 58 47961172 47962009 CATCTTCACTCAACTTCATGC 58 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478,ENSRNOT00000004966 2 2 2 81 10 108644748 108644766 CTCTCGAGAGTACATCCGG 59 108644811 108646156 CTTCTCCTTCTGGCTCCTG 60 NA Rattus norvegicus 81 Olr852 ENSRNOG00000018362 ENSRNOT00000024724 1 1 1 60 5 69751769 69751787 TCTCTGTGAAATCCTGGCT 58 69751727 69751747 GAATTCATTGCCTGAGATGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx6 ENSRNOG00000001873 ENSRNOT00000002558 2 1 1 80 11 87441172 87441190 CTCAGGCCAAGAACTTCAC 59 87441233 87441331 CTAAGGCATTGGTTCTGGAG 58 NA Rattus norvegicus 81 Mir194-1 ENSRNOG00000035482 ENSRNOT00000053605 2 1 1 60 13 103250584 103250603 ATCACGTGTAACAGCAACTC 59 103250626 103250644 AGTAACAGCAGCTCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 3 1 1 65 1 81751526 81751806 AGTCTGGGAAGCTGAAAGTC 60 81751832 81751852 CAAGCTCTTTATGTTTGGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Wdr59 ENSRNOG00000018967 ENSRNOT00000047179 3 1 1 80 19 43694191 43695535 CACTCGAGTTATCAGCGAC 58 43694129 43694150 TAGATATAGGTGTCCACAGAGC 59 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 2 2 2 80 18 3208710 3208729 AGCTTGCATCAGTTCTTCAG 59 3208770 3210209 CAAATGACATATCGTGGTTGC 58 NA Rattus norvegicus 81 Elac1 ENSRNOG00000000113 ENSRNOT00000000125 2 1 1 130 18 69711133 69716305 TTAAAGCAGGGAGAATCACC 58 69711022 69711040 GATCTCAATAGGCTGCCTG 58 NA Rattus norvegicus 81 Pax3 ENSRNOG00000013670 ENSRNOT00000018652 1 1 1 80 9 84097938 84097958 TGTTTAGCTGGGAAATCAGAG 58 84096719 84097896 TGATGGAACTCACTGAGGG 59 NA Rattus norvegicus 81 AABR07017676.1 ENSRNOG00000046956 ENSRNOT00000071501 3 1 1 61 15 29987574 29987690 GGGATAAACTTCCTCCTGAGAG 60 29987534 29987554 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Msmp ENSRNOG00000043023 ENSRNOT00000068105 2 1 1 89 5 59085329 59085562 TACTTCCAAGCTCAAGCTCC 60 59085259 59085278 GGTACAATGGAAGCAGTCCT 60 NA Rattus norvegicus 81 Golga7b ENSRNOG00000015051 ENSRNOT00000020390 1 1 1 80 1 261512999 261513017 TGAGAAGGTCTTTGCTCCC 59 261513058 261514222 TAGATGGAGATCTCGATAACCC 59 NA Rattus norvegicus 81 LOC102552939 ENSRNOG00000028712 ENSRNOT00000033631 2 1 1 81 18 68753292 68755377 CACAGCAGGTATTAAGGAATCC 59 68753232 68753250 AGTTCACATGTCACGTGGT 60 NA Rattus norvegicus 81 Dqx1 ENSRNOG00000008062 ENSRNOT00000011002 2 1 1 80 4 113892907 113892926 CAGATTTCTCCTTCTCCCTC 57 113892968 113893076 TCCGAGGATTGTAAACACTG 58 NA Rattus norvegicus 81 Dqx1 ENSRNOG00000008062 ENSRNOT00000011002 3 1 1 80 4 113892908 113892927 AGATTTCTCCTTCTCCCTCC 58 113892968 113893077 ATCCGAGGATTGTAAACACTG 58 NA Rattus norvegicus 81 Nutm1 ENSRNOG00000005111 ENSRNOT00000006876 3 1 1 81 3 103742731 103745119 CAGATGGATCCTCTCCATTACC 60 103742671 103742691 AAGGGAAGTGTACTGAAAGGG 60 NA Rattus norvegicus 81 Ptma ENSRNOG00000025731 ENSRNOT00000051368 1 1 1 60 13 89873793 89873811 CCACCAAGGACTTGAAGGA 59 89873751 89873769 GCGTCTCTTCCATTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn2b ENSRNOG00000016221 ENSRNOT00000021819 2 1 1 80 8 49426352 49426602 CTCAGAGGAGATGTTCCTCC 59 49426645 49426663 GAGAACTCTACGCGGTCTC 60 NA Rattus norvegicus 81 RGD1560017 ENSRNOG00000029262 ENSRNOT00000049695 2 1 1 60 3 94833051 94833071 AGTCATTGAACACATCCAGGT 60 94833011 94833029 AGCTCTGTAGGTTCGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr721 ENSRNOG00000006654 ENSRNOT00000008690 3 1 1 60 3 78725474 78725494 ATTCAGATCCTCTTCACAGTC 57 78725434 78725455 TAAAGTGGTCTATGACATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311575 ENSRNOG00000002139 ENSRNOT00000002908 3 1 1 80 14 33665522 33668252 CATGGAGGAGAAGGTTGCT 59 33665460 33665479 TTGACACTTTCAATGGTGCC 59 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 1 2 2 80 1 80650030 80650048 GTGCAGAGTGGAACATGAG 59 80647698 80649986 GATACTTCGGGAGGGTAGC 59 NA Rattus norvegicus 81 Vps9d1 ENSRNOG00000028904 ENSRNOT00000051945 3 1 1 83 19 56041909 56041927 TTTGTGGTGCTGAGAAGTG 58 56041364 56041865 AATCAAGTACCCTTCATGAGTG 58 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296,ENSRNOT00000082105 2 2 2 80 6 64281547 64281568 GGAATACCACAACATACACGAG 59 64281607 64284502 TGTGGACTTCCTCTGTATCTG 59 NA Rattus norvegicus 81 Scai ENSRNOG00000025278 ENSRNOT00000039410 1 1 1 80 3 23384429 23384449 AACCGGGACATTATCAATGGA 60 23380424 23384387 ATCTCCAGGATGAAGGCAG 59 NA Rattus norvegicus 81 Scai ENSRNOG00000025278 ENSRNOT00000039410 3 1 1 80 3 23387092 23387113 TAGTGTGCTTCTGATTTACCTG 58 23384469 23387054 CCAAAGTCATAAGGACCTTCAC 59 NA Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000054939 3 1 2 117 10 110139841 110144866 CACTACCAAGGTGAAACCAG 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Lgr6 ENSRNOG00000005093 ENSRNOT00000006969 1 1 1 80 13 51849360 51849380 ATCTACATAACAACCGCATCC 58 51834722 51849320 AGTTCAAGTCTAGTGTCTCCA 58 NA Rattus norvegicus 81 Dio1 ENSRNOG00000061237 ENSRNOT00000091521 1 1 1 87 5 126902194 126911186 TTCATTCAAGGCAGCAGAC 59 126902122 126902140 CGAGTCTCTTGAACTGGTC 58 NA Rattus norvegicus 81 RGD1561310 ENSRNOG00000045968 ENSRNOT00000048997 1 1 1 60 17 36438576 36438595 CTAAGAGGCGAAACACTACC 58 36438535 36438557 CTTCGGTAGACAATCTTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500460 ENSRNOG00000005666 ENSRNOT00000007462 3 1 1 60 5 64615550 64615571 CACTATCCTTGATTCTCACCTG 58 64615511 64615530 AAAGGAGAGGTTGCTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991,ENSRNOT00000002981 1 3 3 80 14 34492072 34495354 CAGTTCTTACAGACATCTCGG 58 34495395 34495414 CTGTTGTAGTGGAAAGGCAG 59 NA Rattus norvegicus 81 Mbd1 ENSRNOG00000024104 ENSRNOT00000032202 3 1 1 81 18 70257754 70257778 GAGAACAAAGAAGATGATGTCTCTG 60 70257816 70257922 AAATCTCCGTGATCACTGGG 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325,ENSRNOT00000070819 1 3 3 80 9 95078902 95078921 CTTAGAGTCTGGACAGTGGA 58 95078199 95078859 CAGTCTGTACTCCTTGAGC 57 NA Rattus norvegicus 81 Ier5l ENSRNOG00000024846 ENSRNOT00000036770 2 1 1 75 3 9037706 9037724 AGAGCCTGATCAGCATCTC 59 9037649 9037667 TTCTTGTGCAGCTTGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfat ENSRNOG00000025140 ENSRNOT00000068291 1 1 1 80 7 109130035 109133460 ATGAAGTCAAGCAGGTTAGG 58 109129974 109129992 GTGCTTGAACTTGAACACC 58 NA Rattus norvegicus 81 Zfat ENSRNOG00000025140 ENSRNOT00000068291 2 1 1 80 7 109063109 109071789 CTCATCCAACAAGGTGGTC 58 109063047 109063067 CTTCAAGTGTCTGTTGAACTC 57 NA Rattus norvegicus 81 Sumf2 ENSRNOG00000000922 ENSRNOT00000001224 2 1 1 80 12 30483381 30486513 AAGACTTCAGGGAGTTTGTC 58 30483320 30483339 AATCCTCAAAGACGAAGCTC 58 NA Rattus norvegicus 81 Prdm9 ENSRNOG00000021493 ENSRNOT00000066370 2 1 1 80 1 57534990 57545616 CAGCAGGAAGAGAACTAAGGA 59 57534930 57534952 GAGTGAGGAATTTCTGACTTGAG 59 NA Rattus norvegicus 81 Psmd3 ENSRNOG00000028103 ENSRNOT00000039836 2 1 1 80 10 86608420 86608440 GAAGTTTCAAACAGATGGGAC 58 86608482 86608618 CTGATCATACGCACACCTG 58 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 1 4 4 80 1 81793829 81794036 AGTTCAAGAACCTGGATATCAC 58 81794075 81794095 CAGCTTTGTCTTTGGTTAGTC 58 NA Rattus norvegicus 81 LOC688130 ENSRNOG00000036830 ENSRNOT00000055274 1 1 1 90 7 145060815 145060833 CAATGCCTGTCATGTGGTC 59 145060591 145060763 ATTAAGTGGCTCATCATCGAC 58 NA Rattus norvegicus 81 Sgcd ENSRNOG00000002372 ENSRNOT00000003224 2 1 1 80 10 32279965 32279985 TGAAGCTAGAAGGAGACTCAG 59 32222028 32279925 AGTATAGGGCATTACCTGGTC 59 NA Rattus norvegicus 81 Cpne4 ENSRNOG00000026577 ENSRNOT00000016749 2 1 1 80 8 113450883 113450903 TCAGAGAAAGCTTTCCAAGTC 58 113450944 113452070 AATTCTTCAGCAATCACCGT 58 NA Rattus norvegicus 81 Uts2b ENSRNOG00000038512 ENSRNOT00000042650 2 1 1 80 11 76833861 76833879 GGCTTTGTTGTCTGTGACG 60 76833920 76838372 GCTGGAAATAACTCATGTCCTG 60 NA Rattus norvegicus 81 Asb17 ENSRNOG00000048832 ENSRNOT00000073873 1 1 1 80 2 260040059 260047637 ATATGGAGAACCTTCACACCC 60 260047677 260047697 TCTTGTCTGAGCCACATAGAG 59 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 1 1 1 60 X 70428078 70428334 CTGGACTAAGGAAGCTAGGG 59 70428037 70428058 CTAGTGATGTGAATAGCAAGGA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Coil ENSRNOG00000000244 ENSRNOT00000037693 1 1 1 80 10 76328921 76328939 ATAGAAGCTCTGAGAGCCA 58 76328982 76329127 CTACTGGATTCTGGATCACC 57 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 1 2 2 80 11 80771231 80772108 TGCTAAAGGATAACGAGGTG 57 80772150 80772169 AGGTGGGAATCTTGTTACTC 57 NA Rattus norvegicus 81 Pold3 ENSRNOG00000018411 ENSRNOT00000024875 3 1 1 80 1 165102090 165107770 GAACTGCAGCAAGTTTAGTG 58 165102029 165102048 AACTTTCTGGAGGATGAGGA 58 NA Rattus norvegicus 81 Prkag2 ENSRNOG00000009085 ENSRNOT00000067183 1 1 1 80 4 6753564 6776415 GTTCCAGGAGGAAGAAGAC 57 6776457 6776477 GTTGGAACGATGTCATAACAC 58 NA Rattus norvegicus 81 Prkag2 ENSRNOG00000009085 ENSRNOT00000067183 3 1 1 80 4 6782222 6782241 CTTCTTTGCTTTGGTAGCCA 59 6782284 6784492 GTGAGCATTCCTACGAAGC 59 NA Rattus norvegicus 81 Igfbp4 ENSRNOG00000010635 ENSRNOT00000014153 1 1 1 87 10 86951137 86957759 GACCTCTGACAAGGATGAGAG 60 86957808 86957826 CATATGCTTCTGCAGGCAC 59 NA Rattus norvegicus 81 Klrd1 ENSRNOG00000060246 ENSRNOT00000082064 2 1 1 133 4 163362365 163363751 CATGGCAGTTTCTAGGATCAC 59 163363989 163364010 AAGGTGTCGATTGAATGTTCTG 59 NA InUTR Rattus norvegicus 81 Nepn ENSRNOG00000000410 ENSRNOT00000066492 2 1 1 80 20 33528036 33539113 GTCAGACCTCCTATCTAACCT 58 33539153 33539173 TCAATAGACTCTGTTCCACTG 57 NA Rattus norvegicus 81 Mir6320 ENSRNOG00000046753 ENSRNOT00000075735 1 1 1 60 15 42959712 42959733 GAGATTACAAGGCAGTTAAAGC 58 42959673 42959694 TGAGATTACAAGCATGTTCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182,ENSRNOT00000091167 3 3 3 85 15 35002485 35002503 ATGTCACCTTCTGTGGTGG 60 35002550 35003087 GGTGACTGTGATTTCTCTTCC 59 NA Rattus norvegicus 81 Mcee ENSRNOG00000016327 ENSRNOT00000021884 1 1 1 84 1 125239752 125239770 AGTGATAGTCCGATCGCAG 59 125239816 125252401 CATTTATGTTGTCCACCTCGA 59 NA Rattus norvegicus 81 Agtr2 ENSRNOG00000050006 ENSRNOT00000074269 3 1 1 90 X 119390213 119391119 TCTGGAAGAAAGAGTGTAAGGA 59 119391170 119391188 TGGTGATGTTTCTGCTGGT 60 NA InUTR Rattus norvegicus 81 Alpk3 ENSRNOG00000011659 ENSRNOT00000015898 3 1 1 80 1 142893286 142893305 TTGAGACCACACTCAAGTCC 60 142893348 142905455 GCTCTGGGTATCCTGTGAC 60 NA Rattus norvegicus 81 Nudcd1 ENSRNOG00000024929 ENSRNOT00000006685 2 1 1 80 7 83316860 83316880 AACTTATAAGAGACCCTGCCC 59 83314186 83316822 GATTTGGATTCAGTTCGTCAGAG 60 NA Rattus norvegicus 81 Olr344 ENSRNOG00000030326 ENSRNOT00000051124 3 1 1 60 1 229825071 229825090 ATATACCTCCAATCCTGGCT 58 229825112 229825131 AAGAGCACGATCTCATTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clcn6 ENSRNOG00000008345 ENSRNOT00000011287 2 1 1 80 5 164818644 164818662 GATGAGCATGTGGCTTCTG 59 164818420 164818602 GTAGGGAGTGTATCTCCTCTC 58 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000056933,ENSRNOT00000027987 2 2 2 80 1 87187796 87187910 CTACCTTCACCAGGACTGG 59 87187953 87187972 AGGTCTGGAGCATTGATGTC 60 NA Rattus norvegicus 81 Cask ENSRNOG00000003054 ENSRNOT00000004187 2 1 1 80 X 9463979 9467717 CCAGGTTTAAATGAGGATGAATCTC 60 9467750 9467773 GAAGTAGTGTGCATATGTTCTCTG 60 NA Rattus norvegicus 81 Erbb4 ENSRNOG00000014248 ENSRNOT00000019283 1 1 1 80 9 75025458 75051564 CTCCAATAGGAGTGAAATTGGAC 59 75024282 75024301 CCATCCTGGTACACAAACTG 59 NA Rattus norvegicus 81 Npbwr1 ENSRNOG00000007640 ENSRNOT00000010032 3 1 1 60 5 13380644 13380664 TTACTTCATCACCAGTCTGAG 57 13380686 13380704 GAAGGCATAGAGGAAAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 3 1 1 149 15 104191362 104191384 ATACTTGACAAAGGAGGACCT 59 104191233 104191251 GATGGAAAGCTCTGGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Polr2c ENSRNOG00000015720 ENSRNOT00000021639 2 1 1 80 19 10581735 10581753 TATCGAGAACACGGACCTG 59 10578893 10581592 CAGTCAATGGCTATTATGGGC 59 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696,ENSRNOT00000091557 1 3 3 80 18 15520972 15520991 GGAAGATCAATGGCTTTCCC 59 15521031 15521233 CAGAGTAGTGAACTCTGTTCCA 60 NA Rattus norvegicus 81 Timm17a ENSRNOG00000007040 ENSRNOT00000009398 3 1 1 80 13 52125099 52126070 CAGTTTCCTAATGGCCCTC 58 52125037 52125055 GTCTCCAAATGGTGAGGAC 58 NA Rattus norvegicus 81 Pex11b ENSRNOG00000021216 ENSRNOT00000028811 2 1 1 80 2 198763933 198770181 TCCTTCAGGTACTATCTCTTCTC 58 198770220 198770239 CTCTTGTTCCATCAACAGGC 59 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 3 2 2 80 7 50173735 50173755 AACTGACTGTTGTCATTCTGG 59 50090474 50173695 GAATCTTCACGTAGGGATCAG 58 NA Rattus norvegicus 81 Amh ENSRNOG00000019377 ENSRNOT00000026220 2 1 1 98 7 11776761 11777112 TGGCTGAAGTGATATGGGA 58 11776681 11776699 GGTATAGCACTAACAGGGC 57 NA Rattus norvegicus 81 Ccdc179 ENSRNOG00000049297 ENSRNOT00000074296 3 1 1 111 1 107383131 107384420 TCTACCAGGCAGTCTATGGA 60 107383039 107383057 TTCCTGGATCTGGAATCGG 59 NA Rattus norvegicus 81 Tmem126a ENSRNOG00000022748 ENSRNOT00000038333 3 1 1 81 1 156285025 156287287 AGAATCAGACAGGAATCTGC 57 156287331 156287349 ACTGTTTGCTATTAGGCCC 58 NA Rattus norvegicus 81 Vom1r11 ENSRNOG00000056833 ENSRNOT00000078071 2 1 1 60 1 60517725 60517745 CATTATCTCCAAAGGACTCCC 58 60517685 60517705 ATTGAATAACTGGTTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jag2 ENSRNOG00000013927 ENSRNOT00000019213 3 1 1 80 6 137715804 137715824 AGATGAGATCAATGGGTACCG 60 137715654 137715764 CTCGTGAATATGACCACTTCC 59 NA Rattus norvegicus 81 Kcna4 ENSRNOG00000004918 ENSRNOT00000006524 1 1 1 60 3 98298129 98298148 TACAGTTCAGTCCGCTACAG 59 98298165 98298189 GTAGACCAGACACATTTATTACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir876 ENSRNOG00000041320 ENSRNOT00000063073 3 1 1 62 5 52461703 52461721 TGCTGTGGATTTCTCTGTG 58 52461659 52461678 ATTACTTTGCAAACCACCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgmb ENSRNOG00000048190 ENSRNOT00000075401 2 1 1 81 1 57809623 57809644 CAATTACCTTTCGGTTCAAGTG 58 57797354 57809584 GATAATGGTGATCTTGTTCGTG 58 NA Rattus norvegicus 81 Bsnd ENSRNOG00000006543 ENSRNOT00000008739 1 1 1 91 5 126080333 126080351 TCTACGGCACCTTCTATGC 59 126076388 126080282 CACAAAGGTGATCTTAGGATAGC 59 NA Rattus norvegicus 81 Tex22 ENSRNOG00000028158 ENSRNOT00000034995 1 1 1 86 6 137889618 137890021 GAGCTCAGCCCTAGATGTG 60 137890071 137890089 CTGTAGCGTCTTCCTCTGG 60 NA InUTR Rattus norvegicus 81 Ube3c ENSRNOG00000010702 ENSRNOT00000015232 3 1 1 80 4 2557760 2557781 CGAGAAGAAATTTCTGTCCTCC 59 2557817 2559337 CATAGAGCTGGGTAACTTTATCTG 59 NA Rattus norvegicus 81 Olr802 ENSRNOG00000045828 ENSRNOT00000045027 3 1 1 60 4 71881574 71881593 CAAACACATCCAAGCTGGAC 60 71881533 71881552 CAGAAGAGTCAGCAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910562 ENSRNOG00000045815 ENSRNOT00000073285 3 1 1 60 11 23057865 23057886 CATGTCCTAGAAATGATGTCCT 58 23057826 23057848 GTACCAGTGTAACTACAAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm31y ENSRNOG00000003377 ENSRNOT00000004491 3 1 1 60 X 98095031 98095051 ATATCCTGCAAGACAACTGAG 58 98094991 98095009 AGCTGTTCTTGCCCTATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 2 2 2 80 15 35415511 35415658 CTGTTAAAGCTGAAGAGTAAGGC 60 35415453 35415471 TTTCACTTTGACGTTGCGT 59 NA Rattus norvegicus 81 Brix1 ENSRNOG00000018021 ENSRNOT00000024285 2 1 1 82 2 60452181 60452397 AGTCTCCAAACATGCATCG 58 60452117 60452137 CTGAACATCTTTGACTTGCTG 58 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042,ENSRNOT00000085966 1 2 2 80 4 123536750 123538074 ATAAGATCCAGGGTGCCAC 59 123536688 123536707 CAACAGGTTCCTTCTTGGTC 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575,ENSRNOT00000029842 1 2 2 80 11 72801685 72801703 CAACCGTGATGTATGGAGC 59 72799839 72801642 CTGTCATGATAAACCTGCCA 58 NA Rattus norvegicus 81 Phlda2 ENSRNOG00000020614 ENSRNOT00000027972 1 1 1 166 1 216703151 216703169 ATCGACTACCAGAACCGTC 59 216702705 216702723 ATCTTCGGTGAAGAACAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nhej1 ENSRNOG00000018162 ENSRNOT00000024444 1 1 1 80 9 82312726 82312744 GCATTGCTTCGGATGAAGG 60 82311887 82312682 TGTCTTCAATCGACCTCGG 60 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 2 2 2 82 1 198458188 198458209 CTCAGCTTATATTTCGGACCAC 59 198456845 198458146 CACCAGTACCTTTGTTGCAG 60 NA Rattus norvegicus 81 Rn60_8_0102.1 ENSRNOG00000008114 ENSRNOT00000010872 2 1 1 60 8 10140457 10140477 GAGGAAATGGCTAGTGATGAG 58 10140499 10140517 GATGGCTTCTTTGGTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb4r ENSRNOG00000020399 ENSRNOT00000027647 2 1 1 60 15 34452396 34452416 TGTGTCACTATGTCTGTGGAG 60 34452434 34452456 CTCATGATAGTGATAAGCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC116121 ENSRNOG00000015546 ENSRNOT00000020856 2 1 1 80 18 16443212 16443232 CAGGCTCTACAAACATCAGTC 59 16443273 16445026 CAGATGTAGGTGTTCTGACG 58 NA Rattus norvegicus 81 Ccar1 ENSRNOG00000000397 ENSRNOT00000067004 1 1 1 80 20 32390070 32390890 TGGAGAACAGGATGAAGAAGAG 60 32390011 32390032 GGATCAAGTTTAGACCAATGGG 59 NA Rattus norvegicus 81 LOC100909940 ENSRNOG00000053249 ENSRNOT00000080395 2 1 1 60 3 73668281 73668299 GGAAGAAAGCCTTCTCCAC 58 73668239 73668258 GTACCGTAGAACACAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000054862,ENSRNOT00000087961 1 2 2 80 1 216735654 216735672 AAGGCATCCCTGAGTTCTG 59 216733920 216735613 TTGGTTCATCATATTCCTGCAC 59 NA Rattus norvegicus 81 Mb21d2 ENSRNOG00000024040 ENSRNOT00000032569 2 1 1 111 11 75434432 75530657 TTTCCATGCTGGGAATGGT 60 75530732 75530750 TCATCTAGGTCCAGGTCCA 59 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 3 1 1 69 10 75190726 75190744 CTCAGGAACCAGGAGATGC 60 75190658 75190693 CATCCCTGTTGCAAATTGC 58 NA DesignNoJunction Rattus norvegicus 81 Irgc ENSRNOG00000024257 ENSRNOT00000030900 3 1 1 118 1 81293284 81295274 CATCTGAGCCACTGAGGAG 60 81293184 81293202 CCATGAGGATGGTGGTCTC 60 NA InUTR Rattus norvegicus 81 Olr1568 ENSRNOG00000046589 ENSRNOT00000074815 2 1 1 60 11 85031296 85031315 TGATGATAACAGGAGCTTGG 57 85031336 85031356 GCATATCCAGTATGAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sod3 ENSRNOG00000003869 ENSRNOT00000005155 3 1 1 93 14 60960193 60964216 CTTGTCAGGTGTGGAACCT 60 60960118 60960137 TATCTGACATGGTCCAGGTG 59 NA InUTR Rattus norvegicus 81 Baiap2l2 ENSRNOG00000012215 ENSRNOT00000016362 2 1 1 80 7 120504160 120504178 CTGGAGAAGTGCATGTCTG 58 120503516 120504118 GTTCACACTCTCCTTCATCTC 58 NA Rattus norvegicus 81 Olr1202 ENSRNOG00000051309 ENSRNOT00000049392 3 1 1 60 8 40411467 40411489 CACCTATTTAACCACGTCTTTCC 60 40411506 40411527 AAATACTGAAGCAAACCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocos ENSRNOG00000015113 ENSRNOT00000066583 1 1 1 80 18 16627154 16627173 GAGGCTCAGTATCTGTTGGT 59 16627216 16630285 CTTTCCACGTTCGTCACTG 59 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 3 2 2 80 4 123656429 123656571 ACAAGTATAACTCGTACAGGGAC 60 123656371 123656389 AAATTGCGAAGCCAGACAC 60 NA Rattus norvegicus 81 Msrb1 ENSRNOG00000055314 ENSRNOT00000090552 2 1 1 80 10 14108460 14108480 CATTTACTGAAACCATCCACG 58 14108521 14108894 CACAGGACACCTTTAAAGCT 58 NA Rattus norvegicus 81 Tob1 ENSRNOG00000002828 ENSRNOT00000003780 2 1 1 60 10 81914764 81914782 GAATGTTCCCAGGTGACAG 58 81914803 81914824 TCAAAGGCATTACTGTACTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Leo1 ENSRNOG00000010116 ENSRNOT00000013512 3 1 1 82 8 82386860 82388718 AGGTGCCCAAAGATAATAATGG 59 82388761 82388779 CTTGTCCTCTCCGTCACTC 60 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228,ENSRNOT00000028075 2 2 2 103 8 117829347 117829365 GAAGCTGAAGGAGGTGAGG 60 117829430 117829879 TCTTCTCTTCCTGTAGCATCC 59 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228,ENSRNOT00000028075 3 2 2 108 8 117829433 117829881 TGCTACAGGAAGAGAAGAGG 59 117829952 117829970 TCTTTCTCGTGACTCTCCC 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000026719,ENSRNOT00000087595,ENSRNOT00000081301,ENSRNOT00000026707 2 5 5 80 9 97938230 97938248 AAGCAGTGTGATTGGTTCC 58 97937014 97938189 ATGTGGAGTGTTTATCTGTCTG 58 NA Rattus norvegicus 81 Ankrd32 ENSRNOG00000040279 ENSRNOT00000018457 2 1 1 80 2 4102036 4102056 CTCAAAGAGCGTTACTAATGC 58 4101302 4101997 CATGGTTTAACTCAAGGAACTC 57 NA Rattus norvegicus 81 Iqcf1 ENSRNOG00000037289 ENSRNOT00000056391 1 1 1 95 8 115193215 115193612 GAACAATGGATGAGGAGCAG 59 115193670 115193688 CTGAGGACAGATCAGCTGG 60 NA InUTR Rattus norvegicus 81 Nadsyn1 ENSRNOG00000020736 ENSRNOT00000028175 2 1 1 80 1 216986204 216987892 ATTGACAACCAGGTTGTACAG 59 216986144 216986162 TGGCTCTTTGAAATGCTCC 59 NA Rattus norvegicus 81 Cldn9 ENSRNOG00000003654 ENSRNOT00000004848 2 1 1 101 10 13003523 13003541 CTCCTCTGCTGTACGTGTC 60 13003440 13003459 CTTATCAAGTCCCGAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc81 ENSRNOG00000033733 ENSRNOT00000055488 3 1 1 80 1 154072145 154073046 AGAAATACAAGGCTACAGCAG 58 154071299 154071319 AGATCAGGAAGTATGAGAGGG 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635,ENSRNOT00000022665 1 3 3 80 18 12030833 12030851 GACAACGTTCACCTTGGTC 59 12030892 12032905 CAACAAGAATGGAACCAATCCT 59 NA Rattus norvegicus 81 Taar7h ENSRNOG00000048072 ENSRNOT00000043436 1 1 1 60 1 22451410 22451428 GACTCCATCATTGACGCCT 60 22451368 22451392 CTAGGATTTCATACACATAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr38 ENSRNOG00000014102 ENSRNOT00000018921 1 1 1 80 3 23294074 23294092 CCTGGGTCAATAGCCTAGC 60 23294135 23294415 CCCAGACTTTGACCATACGA 60 NA Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632,ENSRNOT00000013118 1 2 2 80 16 48621782 48621800 TTATCTGAGCGACCTTCCA 58 48610499 48621486 TGGTTCTTGCTTGATGTGC 59 NA Rattus norvegicus 81 LOC685186 ENSRNOG00000030963 ENSRNOT00000041328 3 1 1 60 5 115649276 115649294 AGTATGACTCTACCCACGG 58 115649318 115649336 ACCAGCTTCCCATTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1423 ENSRNOG00000049845 ENSRNOT00000045318 3 1 1 60 10 44122298 44122319 ATCCTACTCATCCATCTTCCTC 59 44122259 44122277 CTTCTTCCTACCCTCTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000057404,ENSRNOT00000006624 3 3 3 80 15 109970334 110020814 GCTTTAATGAGATAGGCACGA 58 109970274 109970295 CTCTGTACATGAGGAATACCCA 59 NA Rattus norvegicus 81 Olr907 ENSRNOG00000048775 ENSRNOT00000042179 3 1 1 60 7 5594292 5594311 TTCAGACACTTGGTTCATGG 58 5594330 5594352 TATAATGAGAGTCCGTACAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb4 ENSRNOG00000054458 ENSRNOT00000085579 3 1 1 85 7 59514459 59514477 GTGAACAACTCCGAGTCCA 60 59490340 59514411 GGGATATAGGAGCACTTGGG 60 NA Rattus norvegicus 81 AABR07062154.1 ENSRNOG00000061420 ENSRNOT00000081340 2 1 1 60 4 162831253 162831274 CAAGCAAGGTATCAATATCAGG 57 162831214 162831234 GCACTTCATGTCAGTAAAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr27 ENSRNOG00000015609 ENSRNOT00000021141 2 1 1 80 1 56934942 56939767 AGGCACTTAAAGGGTTGAC 58 56934880 56934899 CTGGACTAAATCGCAAACAC 58 NA Rattus norvegicus 81 Lrriq3 ENSRNOG00000009555 ENSRNOT00000012841 3 1 1 80 2 261409438 261411107 CTCCATGGAAACCAGATAAAGAC 59 261411144 261411165 ATGCAGATAGAGGAGTTTGAGG 60 NA Rattus norvegicus 81 Spata9 ENSRNOG00000012770 ENSRNOT00000017068 2 1 1 94 2 2729973 2730158 ACTTCTCTGGAAGATTTGAGG 57 2730209 2730232 CTGTGATAATCTTAGGATGGTAGG 58 NA Rattus norvegicus 81 Sprn ENSRNOG00000018927 ENSRNOT00000025609 3 1 1 60 1 212622186 212622204 GGAGTCTACAGCTACTGGG 59 212622144 212622163 AAATACGTGGACTGTGTACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn4 ENSRNOG00000026162 ENSRNOT00000065384 1 1 1 80 2 124046639 124046902 TGAAGGTTCTGAATTGTGTCC 59 124046400 124046419 CTTCCTTGTCGATTTCAGGG 59 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487,ENSRNOT00000051883 1 2 2 80 1 123908534 123908553 CTCTGACTGTCTTCATGCTG 58 123907414 123908494 CGAAGTATTGTGCTATCAAGGG 59 NA Rattus norvegicus 81 Glyr1 ENSRNOG00000003065 ENSRNOT00000004159 3 1 1 80 10 10727875 10738746 TGGAACAGAAGATCACGCA 59 10738787 10738808 TTGATCTTGATCATCTCCTCCT 59 NA Rattus norvegicus 81 Mrpl35 ENSRNOG00000008546 ENSRNOT00000012021 3 1 1 80 4 99741317 99741336 AGAGAAAGACAGTGAAGTCG 57 99739991 99741274 TATAGCCAGCCTTTCTCCT 58 NA Rattus norvegicus 81 LOC100364433 ENSRNOG00000047993 ENSRNOT00000074329 2 1 1 60 7 6626141 6626161 CCATCATCACTCTCACATTGG 59 6626101 6626121 CTCAGGAAGAAATACATGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem110 ENSRNOG00000017051 ENSRNOT00000023314 1 1 1 80 16 6955358 6955378 AATCCAATTGAGAACCCTGAC 58 6955418 6956331 CCAGAACATGAAAGCATTGAC 58 NA Rattus norvegicus 81 Smoc1 ENSRNOG00000005998 ENSRNOT00000007947 2 1 1 80 6 104862350 104862897 GACTTCCACACGCTATGTG 59 104862941 104862959 TCCTTGAAAGGGTCATCCA 58 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 1 2 2 82 19 951728 951746 TTGGACATCAGCTCTGAGG 59 949935 951682 CACTCCTCATAGCCTGGTG 60 NA Rattus norvegicus 81 Msrb3 ENSRNOG00000042668 ENSRNOT00000064251 1 1 1 80 7 62929560 62929580 GAAGGAGAATACACCCATCAC 58 62899735 62929518 CGTTTCTGACTTGAACAGC 57 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 2 2 2 80 2 256911491 256913245 GCATTGTTGGGTTATGCAG 58 256911429 256911447 TTCGTGTTTGGTGAACCAG 59 NA Rattus norvegicus 81 Pcdhga10 ENSRNOG00000027253 ENSRNOT00000026985 2 1 1 60 18 30896333 30896351 AGCTCAGTCCCAATAAGCA 59 30896374 30896393 TACTTGATGCCCTTAGCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 1 2 2 80 7 107590277 107590298 CCAACAACTGGTACTACATCTC 59 107586967 107590238 CAGCCACCTCAGAATAATGAG 59 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 2 2 2 80 7 107595702 107596964 TCGTGTGATTTCTGATGAAGG 59 107595642 107595665 CATATCCCTGGAATGTAACTTTCC 59 NA Rattus norvegicus 81 Riok2 ENSRNOG00000012692 ENSRNOT00000017165 3 1 1 82 1 59135108 59137119 ATATGAAGGCATTACATGAGCG 59 59137160 59137180 GATAAGCTCCATGATCACTGC 59 NA Rattus norvegicus 81 Cdk5 ENSRNOG00000008017 ENSRNOT00000011052 2 1 1 80 4 7286959 7286977 CAGCTACAACATCCTTGGT 58 7287020 7287166 TACACTTCAACAGGTTCTGC 58 NA Rattus norvegicus 81 AABR07030977.1 ENSRNOG00000046767 ENSRNOT00000034630 2 1 1 80 10 111389261 111389279 TCAGAAACAAACAGCCGAC 59 111389320 111390502 TGCTCCATATCTGTATCATTGG 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000091182 1 1 4 80 20 3824221 3824829 GCAGCCCTCAGATTAACTC 58 3824873 3824891 CTAAGACTGGTGGCTTCAC 58 NA Rattus norvegicus 81 Sh3bp1 ENSRNOG00000009360 ENSRNOT00000012480 2 1 1 80 7 120133833 120134153 CTTTCCTGGAGATATCAACTTCAG 59 120134192 120134210 ACCTGTTGACTATTGGGCT 59 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 3 2 2 80 16 39921444 39928575 TACATACATGCACTGAGGCT 59 39928618 39928636 ACTGTCTCCTGATAGCCAG 58 NA Rattus norvegicus 81 Yipf2 ENSRNOG00000022043 ENSRNOT00000012138 3 1 1 80 8 22623498 22623516 CTGGCAATCTCACTTTGGT 58 22623358 22623457 CTATAGTCACCTTGTGGAACTG 58 NA Rattus norvegicus 81 Mbd4 ENSRNOG00000010919 ENSRNOT00000014537 1 1 1 80 4 147753465 147753485 GAAAGAGTTGTGAAGCAAAGG 58 147752755 147753423 CTTTGATCCTTGTGGGCTG 59 NA Rattus norvegicus 81 Neurl1b ENSRNOG00000027606 ENSRNOT00000039398 1 1 1 136 10 17048489 17048832 AATCGTCTCTGGTGACAGC 60 17048371 17048389 GTAGATGACCGTGTCCACC 60 NA Rattus norvegicus 81 Ecd ENSRNOG00000042253 ENSRNOT00000008553 2 1 1 80 15 4411786 4414505 GCATGAAGTTGGCTCATGG 60 4414548 4414567 TGACAAGGGATTTCCTGGAG 60 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000091614,ENSRNOT00000002683 2 2 2 80 11 37928521 37929113 TACGAAGGTGATAACTCTGAGC 60 37928462 37928481 ATGAGTCACCATGAACAGCA 60 NA Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000077017 3 1 2 85 10 70424772 70424790 TACTGACACAGACCAGAGC 59 70424427 70424726 CTTAAATGCTCTGTCCTTCAGG 59 NA Rattus norvegicus 81 Agbl4 ENSRNOG00000033097 ENSRNOT00000044795 3 1 1 80 5 130293084 130293103 TCCAACTGGTTACTCTGGAC 59 130293145 130300352 GAAGAATGCAAGAGTTCGCT 59 NA Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 3 2 2 80 17 6710033 6710053 AAGAGATCTCCTAGAGCTGGA 59 6710094 6711310 CCAACAATCACTGTGTTCCC 60 NA Rattus norvegicus 81 Sept14 ENSRNOG00000038495 ENSRNOT00000068460 2 1 1 84 12 30606208 30606226 GAATGTTTGCCCACTCAGC 60 30606273 30607031 CAATTCCAGTTTCTCCCACG 59 NA Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 1 1 1 60 6 140980171 140980190 AAGTTGTTGCTAAACTGGGT 58 140980006 140980149 TCACCTCACACTGAATACCA 58 NA DesignNoJunction Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 2 4 8 80 1 226463366 226467007 AAGCCATCAACGACCTAGAC 60 226467050 226467068 TGGGAGGATAGGAACTCCA 59 NA Rattus norvegicus 81 Olr1559 ENSRNOG00000050423 ENSRNOT00000070849 1 1 1 60 11 43699065 43699083 GGATTCTCAGATCACCCAG 57 43699105 43699125 GATAGATGACAGAGAACACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csrnp2 ENSRNOG00000019653 ENSRNOT00000026613 1 1 1 80 7 142124764 142125809 CTTCACACCAACATCCATCC 59 142124703 142124722 TAGTACACAGTCACCTGGTC 59 NA Rattus norvegicus 81 Catsper4 ENSRNOG00000016312 ENSRNOT00000021919 2 1 1 80 5 152441789 152441812 GTGTTGACAATCCTTATCTGTGAG 60 152437597 152441752 GATATTCCAGCCATCCTTCCA 60 NA Rattus norvegicus 81 Polr2d ENSRNOG00000016231 ENSRNOT00000021738 1 1 1 81 18 24570880 24572240 TTTCCCAAAGAGTTCGAAACAG 60 24572282 24572300 CATTCTGCTGCTTTCGGTG 60 NA Rattus norvegicus 81 RGD1563956 ENSRNOG00000025014 ENSRNOT00000030686 1 1 1 60 11 83855807 83855825 CGAATCCAGGTTCATCCGA 60 83855849 83855867 CGACTTTGATCTCGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1236 ENSRNOG00000050733 ENSRNOT00000035054 1 1 1 60 4 1482576 1482597 CTCTTCTTGGCAATCTATGTGG 59 1482617 1482636 CAATCAGAACAATCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 3 2 2 82 4 115265432 115271513 CTACAACAAGTACATCACGCTG 60 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 AABR07029056.1 ENSRNOG00000048608 ENSRNOT00000074890 2 1 1 80 10 4451111 4451216 CTATCAGAGGAAGAAAGTTCCAG 58 4451252 4451274 CCTGTGATAGTTCGGTTAATCTC 59 NA Rattus norvegicus 81 Farp1 ENSRNOG00000011203 ENSRNOT00000015271 2 1 1 80 15 106622997 106624376 TTTGAAAGGTGGATGGAAGTG 59 106624415 106624436 GTGAGATTCTTTGTGACTCAGG 59 NA Rattus norvegicus 81 Mief1 ENSRNOG00000017553 ENSRNOT00000023843 2 1 1 80 7 121473126 121473145 GACATGAAGACAGGTCTGAG 58 121473188 121473393 TGGGCAGAATGTATCTGTG 57 NA Rattus norvegicus 81 Tas2r108 ENSRNOG00000012195 ENSRNOT00000016232 3 1 1 60 4 68657645 68657663 CCATATTCAATCGCTGCCT 58 68657686 68657705 GGGCTCTCAGATTCTTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgn2 ENSRNOG00000051615 ENSRNOT00000082953 1 1 1 81 5 152197818 152197838 GATGCTAAAGGAGACAAAGCC 59 152197293 152197601 TTGGAGGAGCAGGTTTAGC 60 NA Rattus norvegicus 81 Hmgn2 ENSRNOG00000051615 ENSRNOT00000082953 3 1 1 118 5 152197298 152197606 TGTCTGCTAAACCTGCTCC 60 152196826 152196844 ATTCGCATCCTTACCAGCA 60 NA Rattus norvegicus 81 Epx ENSRNOG00000008707 ENSRNOT00000011735 1 1 1 80 10 75170667 75170769 GATGCAACAACAGGAGGAG 59 75170605 75170624 GGTCTTCATACTCAGCTGGT 59 NA Rattus norvegicus 81 AABR07029262.1 ENSRNOG00000029706 ENSRNOT00000039882 1 1 1 60 10 18637207 18637225 CTTGGGTCCTAAGTCTGTG 57 18637248 18637267 AAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1073 ENSRNOG00000031688 ENSRNOT00000042747 3 1 1 60 7 13379194 13379215 ACCCTTTCATCTACAGTCTGAG 59 13379234 13379254 TTCACAAAGTTCTTCAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkln1 ENSRNOG00000054514 ENSRNOT00000081707 2 1 1 80 4 58748919 58765353 TGAGAAAGAGAATGGTCCTAGTG 60 58765390 58765411 CCCAATGTGTAGATTTGTCTCC 59 NA Rattus norvegicus 81 LOC100362277 ENSRNOG00000038057 ENSRNOT00000043027 1 1 1 60 19 58412378 58412396 AAGTCCAAGAACCACACCA 59 58412420 58412438 TCTTGATGCCGTTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364733 ENSRNOG00000037495 ENSRNOT00000056771 3 1 1 86 6 143590311 143590414 TTGTCCCTGCATATGTCCTG 60 143590244 143590262 AAGTCAGACTGAGGGTGTG 59 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 1 2 2 80 15 27850698 27851130 AAAGAAAGGCTTGGATTGGG 59 27851170 27851191 AGTTTGTTCTCTGAGCATTTGG 60 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 1 2 2 80 10 55925370 55925388 AGCTGATGTATGGGATGCT 59 55925429 55925790 ATAGAAAGCCATCCTTCATGTC 58 NA Rattus norvegicus 81 Hivep2 ENSRNOG00000011015 ENSRNOT00000015131 2 1 1 80 1 8326311 8326331 TACCATAACCCACCATTACCA 59 8326370 8331429 TCCTCTTCTTAGATTAGGAGGC 59 NA Rattus norvegicus 81 Magt1 ENSRNOG00000051408 ENSRNOT00000083643 1 1 1 80 X 77038109 77038409 CAGAACTGACGTCAACATTAGAG 60 77038051 77038070 ATAACAGCAAGAAGCAACCC 59 NA Rattus norvegicus 81 Mmp17 ENSRNOG00000023643 ENSRNOT00000035881 2 1 1 80 12 30717887 30718234 AACCTTTCTTGGAGGGTCC 59 30717825 30717843 GGCGTAGTACATGAGTGCA 60 NA Rattus norvegicus 81 RGD1306484 ENSRNOG00000005821 ENSRNOT00000007630 1 1 1 60 10 37582973 37582991 TTTGAGATGCTTGGTGCTG 59 37583013 37583033 CCCTCATTAAATAGCTGACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061131.1 ENSRNOG00000049268 ENSRNOT00000040075 3 1 1 80 4 106289853 106290595 GGATTTCTGCTTCCAGAGGT 60 106290636 106290656 TAGAGACTTGACTTCCAAGGC 60 NA Rattus norvegicus 81 Abl1 ENSRNOG00000047356 ENSRNOT00000042495 2 1 1 82 3 10054832 10060414 TGAAGACCCTGAAGGAGGA 60 10054768 10054787 GTTAGGGTGCTTGATCTCCT 59 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006,ENSRNOT00000046611 2 2 2 81 1 87201459 87202102 CAACTATGAAGAATACTGTGTCCC 59 87201401 87201422 TTCAACATCATAGTACCAGCGA 60 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 1 2 2 80 1 48029792 48029814 GAGAAGTCAGATAGAAAGCATGC 60 48029428 48029752 ATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000072518 2 1 2 82 8 52751891 52751911 AGGCTGCTAATATTCACATCG 58 52751955 52753021 GTGGTCCATAGCTTTGCAG 59 NA Rattus norvegicus 81 Olr1413 ENSRNOG00000026801 ENSRNOT00000031811 1 1 1 60 10 43894479 43894500 CTCAGGAACAAGGAAGTTACAG 59 43894440 43894458 TACTGACTCTACACCTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 3 1 2 81 9 15622183 15623992 TGAGAATGGAGACGGTCAG 59 15622120 15622140 CTGAAGCATCTTCATTACCCA 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484,ENSRNOT00000075078,ENSRNOT00000071741 3 3 3 82 1 217428399 217459834 CTTTGATGCTGCCAGTGAC 60 217459880 217459898 GCACAAATCCAAAGCCCTC 60 NA Rattus norvegicus 81 Myh3 ENSRNOG00000046276 ENSRNOT00000004147 3 1 1 80 10 53636723 53636870 GCAAGTGGATGATTTGGAGAG 59 53636912 53636930 TCCAGCTTCCTCTTGTTCC 59 NA Rattus norvegicus 81 LOC100361444 ENSRNOG00000011490 ENSRNOT00000015381 3 1 1 82 8 22857083 22857102 TGTACGGAGACTACAAGTGC 60 22857144 22858069 CGGCTCGATCCTTTAAATTCTC 60 NA Rattus norvegicus 81 Tac3 ENSRNOG00000004229 ENSRNOT00000005679 2 1 1 88 7 71027180 71027801 CACAGAAACGTGACATGCA 59 71028178 71028196 CTCTTCAACCACATCAGCG 59 NA Rattus norvegicus 81 Mybpc2 ENSRNOG00000019627 ENSRNOT00000067754 1 1 1 80 1 100521552 100521570 GTGGAGATCAGTGACCCAG 60 100521375 100521510 AAACACATACTTGCTGCTTGG 60 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822,ENSRNOT00000091488 2 2 2 80 6 55659767 55659786 CATGGAGCTGATGTCAACTG 59 55659826 55665602 GTCTTTATTACCAGACAGTGCG 60 NA Rattus norvegicus 81 Ccdc54 ENSRNOG00000028005 ENSRNOT00000035340 3 1 1 60 11 52828601 52828622 AGGTAAAGAAATTGCACAGCTC 60 52828642 52828661 CGTATCCTTCGTGGTTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034730.2 ENSRNOG00000050898 ENSRNOT00000036565 3 1 1 80 11 85532564 85532704 CTTAACAGGGTCATGTGCC 59 85532747 85532766 GACAGTTTGACTGTGCTTCC 60 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 3 2 2 84 1 98521275 98521376 GTTGGATGGGTCTCAAGGT 59 98521209 98521229 GAAGATACACAAACCCTCCTG 59 NA Rattus norvegicus 81 Olr960 ENSRNOG00000057263 ENSRNOT00000075430 1 1 1 60 7 6690848 6690868 GTGTAGCTGTTCTCAATACCT 58 6690808 6690829 CTTAGGGTGTAAATGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf3 ENSRNOG00000020888 ENSRNOT00000028343 3 1 1 80 1 218003170 218003188 TACCAAGTACCACCTCCAG 58 218003231 218004987 ATCTCCAGGATGCTATAGGC 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 1 2 2 80 7 126761648 126765315 CTGTGGACAATCTTGGAGC 59 126765358 126765377 GCTCAAAGACTTCCTCATCC 58 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000086572,ENSRNOT00000060111,ENSRNOT00000017749 1 3 3 80 13 56982487 56991080 GAAATGCAAAGATTCAACAGGG 59 56982428 56982448 ACTGGTAATGACAAGGAGGTG 60 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 3 2 2 80 11 89036382 89053527 CTACAAGAGGAAGGACACCA 59 89036321 89036339 AGGAAGGCTTGTTCAGAGG 59 NA Rattus norvegicus 81 Suclg1 ENSRNOG00000005587 ENSRNOT00000007624 1 1 1 80 4 101204026 101204047 TCGTACTGATTGGTGAAATTGG 59 101204087 101208955 CCTTTGGACCTGAGTTATGC 59 NA Rattus norvegicus 81 Kcnb2 ENSRNOG00000028991 ENSRNOT00000045460 2 1 1 110 5 2982182 2982595 AGCATGTAAGATCCTGGCC 60 2982090 2982108 GGTTGCCCAAATTCATCGT 59 NA Rattus norvegicus 81 Mob3c ENSRNOG00000037620 ENSRNOT00000067566 2 1 1 80 5 134684340 134686443 CTACACGTGTTGGAGTTCC 58 134686486 134686505 CAAAGACTCGGAAGAGTCTC 58 NA Rattus norvegicus 81 Car4 ENSRNOG00000002916 ENSRNOT00000003908 1 1 1 80 10 72279545 72279563 GGGAAACGAGGTAAACGAG 58 72279606 72279735 ACTGTGGAGTTTGTAAAGGG 58 NA Rattus norvegicus 81 RGD1561853 ENSRNOG00000050286 ENSRNOT00000070883 1 1 1 60 11 2813120 2813138 GCCACTCAAGAAACGAACC 60 2813078 2813097 GGCAATTCCCACACTTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132c ENSRNOG00000000963 ENSRNOT00000048474 2 1 1 80 12 32809197 32817542 CCAAACAGGAAGCTATAATCAG 57 32809138 32809157 CCTTGGTGTCATAGATGTCC 58 NA Rattus norvegicus 81 Fbp1 ENSRNOG00000017597 ENSRNOT00000023685 2 1 1 80 17 400179 400198 ATGAGGGCTATGCTAAGGAC 59 398611 400137 GGAGTGAATTATCCGGAGGG 60 NA Rattus norvegicus 81 Zdhhc25 ENSRNOG00000046044 ENSRNOT00000071151 2 1 1 60 7 129595557 129595578 ATGGTATGATCTTCCATCTGCT 59 129595599 129595617 AGCATAGTCCGTAGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tubg1 ENSRNOG00000020213 ENSRNOT00000027370 2 1 1 82 10 89033662 89034505 AGCCTAGAGGGATTTGTACTG 59 89034549 89034567 TTTAGCCGTTCCAAGAGGT 59 NA Rattus norvegicus 81 Set ENSRNOG00000034241 ENSRNOT00000051397 1 1 1 151 19 58419986 58420638 CTAAGTCTGGAAGCCATGG 58 58420752 58420771 TGTTCAATTGCTTCTTGCTG 58 NA InUTR Rattus norvegicus 81 Il11ra1 ENSRNOG00000015068 ENSRNOT00000020885 3 1 1 81 5 58155044 58155063 GGATCAATGTGACTGAGGTG 58 58155106 58155664 TCAGGACGTAAGATCCTCTG 58 NA Rattus norvegicus 81 E4f1 ENSRNOG00000009224 ENSRNOT00000012506 2 1 1 80 10 13817055 13817469 GATAGAGACACAGGTAGCCA 58 13816994 13817012 GATGGGAAAGTCTCACTGC 58 NA Rattus norvegicus 81 Camta1 ENSRNOG00000018602 ENSRNOT00000066120 1 1 1 80 5 168559931 168559951 GACCACATGAAGCTCAAAGTC 60 168382409 168382431 GTGGAAAGTAGGAATGATGGAG 59 NA Rattus norvegicus 81 Wrap53 ENSRNOG00000010520 ENSRNOT00000014261 2 1 1 80 10 56171176 56184263 TTATGCCGAAATGGTTCCT 57 56171114 56171134 GAGGACATCAGAGAATACCAG 57 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423,ENSRNOT00000011070 1 2 2 80 7 130253358 130253667 GATGAGGACAGTCCCAGTG 60 130253711 130253729 GTCCTCCTCGTCATCATCG 60 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 1 2 2 80 2 1446265 1446781 AAACTTCAGTGGCTTCTAGAC 58 1446821 1446841 AATGAGCGTGAGAATATGTGG 59 NA Rattus norvegicus 81 Ppp1r3c ENSRNOG00000018494 ENSRNOT00000024941 3 1 1 60 1 255374393 255374411 ATTTGCTTGGCACATTCAC 58 255374351 255374371 GCTGAAGACCATTGTAAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 1 2 2 80 9 16486862 16487892 AAGACCTGAGCAAAGTGGA 59 16487935 16487954 ATTTGTTCAGCATAGCGTGG 59 NA Rattus norvegicus 81 Sh2d4a ENSRNOG00000013541 ENSRNOT00000018543 3 1 1 80 16 23099184 23103236 CTCCAAAGTCTTTAGGGAATCAG 59 23099126 23099147 CTTTGAACCATCGGATGATGTC 60 NA Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261,ENSRNOT00000085235 2 2 2 80 5 135154418 135154436 GAGGAGGAAGTGAGTGAGG 59 135154046 135154375 ACTGTAAACCTTGCTGAACC 59 NA Rattus norvegicus 81 Lpar3 ENSRNOG00000015260 ENSRNOT00000020656 3 1 1 81 2 252115079 252157451 ACTGTCTTAGGAGCCTTCG 59 252157496 252157514 TACACTGCTTGCAGTTCAG 58 NA Rattus norvegicus 81 Atp6v1g3 ENSRNOG00000022480 ENSRNOT00000029679 1 1 1 80 13 55284073 55287156 CAGTCTAAGATAATGGGCTCTC 58 55287194 55287215 GCTCAATTCCTTTATCTTCTCC 57 NA Rattus norvegicus 81 RGD1559995 ENSRNOG00000032335 ENSRNOT00000040010 3 1 1 60 7 69982377 69982398 TACCGAGGTCTTAATTTATGGC 58 69982338 69982357 CTGAAGCATCCATTTAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912436 ENSRNOG00000011399 ENSRNOT00000003628 3 1 1 60 1 8466057 8466075 ACTTAGAGTCGGAAGGCTG 59 8466015 8466034 GCCATGATCTCGTCATTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sp8 ENSRNOG00000005943 ENSRNOT00000008362 1 1 1 71 6 146784917 146784935 GGCAACTTCACTTCTAGGG 58 146786009 146786027 TTACAGGTAGCAGCAAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Sp8 ENSRNOG00000005943 ENSRNOT00000008362 3 1 1 72 6 146784916 146784935 TGGCAACTTCACTTCTAGGG 60 146786009 146786027 TTACAGGTAGCAGCAAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 2 2 2 82 7 12607670 12608824 CTACATCCAGCAGGTCTCG 60 12607606 12607624 GGAACACAGTCACGTACCA 60 NA Rattus norvegicus 81 AABR07065877.1 ENSRNOG00000053487 ENSRNOT00000071876 1 1 1 60 6 143536926 143536946 TTCACCAGCTACAATATGCAC 59 143536886 143536904 CAATCCACTCAAGCACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myct1 ENSRNOG00000018858 ENSRNOT00000025616 1 1 1 60 1 42121702 42121721 TAACACCACGAGTTTAGGGA 58 42121742 42130762 GGACATTATAAGGTCCTCCCA 59 NA DesignRelaxed Rattus norvegicus 81 Rnd2 ENSRNOG00000020698 ENSRNOT00000028089 2 1 1 80 10 89377295 89377314 GTTTGAGAACTACACTGCCA 58 89377354 89378162 TAAGAGGAACCTGAAGTATCCC 59 NA Rattus norvegicus 81 Ttc9b ENSRNOG00000018850 ENSRNOT00000025472 2 1 1 113 1 84471910 84471928 ACTTCAAGGCCACCTATCG 60 84472005 84472811 GAACATTGGTGTCTGTGGG 59 NA Rattus norvegicus 81 Dusp16 ENSRNOG00000006628 ENSRNOT00000009151 2 1 1 81 4 168473773 168475211 GGATGAGGCTTACAGATTTGTG 60 168473713 168473731 ATAGTCCATGAGTTGGCCC 59 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 3 2 2 80 16 6970404 6970424 ACATGTGGAACATTGTACTGG 59 6970464 6971657 TATCGATGCCATTCTTCTCAG 58 NA Rattus norvegicus 81 Mb ENSRNOG00000004583 ENSRNOT00000006184 3 1 1 80 7 118103899 118108753 GTCCTCATCAGTCTATTTAAGGC 59 118103841 118103860 CTCTTCCTCGGATTTCAGGT 59 NA Rattus norvegicus 81 Fam69a ENSRNOG00000023533 ENSRNOT00000030479 1 1 1 88 14 2854697 2857200 ACAACCAGATGTACTTAGGC 57 2857250 2857269 AGTTCCAAAGTCAAGATGGG 58 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 1 2 2 80 4 62270224 62270242 GTTCTGGAGGAAGAGGAGC 60 62270284 62272463 CAACCTCCTCTTCTCTTCCTC 60 NA Rattus norvegicus 81 Lrrc31 ENSRNOG00000027971 ENSRNOT00000033267 3 1 1 80 2 116324337 116325521 TGTCAGAATATTGGATGGTGC 59 116325563 116325581 CTACCCAGTTCCTTGTTGC 59 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368,ENSRNOT00000066233 1 2 2 108 7 117002973 117006988 CTACACATGTGGCATGCAG 59 117007060 117007078 TTATTCCAAGGCCCACCAG 60 NA Rattus norvegicus 81 Slc1a6 ENSRNOG00000007509 ENSRNOT00000009931 1 1 1 80 7 13744008 13745841 TCCTGTGGTGAGCTATGTG 59 13743303 13743323 GTCTGTCCTTACAATCGTCCT 60 NA Rattus norvegicus 81 Gbp5 ENSRNOG00000032240 ENSRNOT00000037339 2 1 1 80 2 248194089 248194111 CTGAGGCAAATAGAGTTTGAGAG 59 248194151 248196000 CATCTCTTCCTGGACCCTC 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000090791,ENSRNOT00000080590,ENSRNOT00000060327 3 4 7 74 20 4087729 4087747 GTTGCTAACAGTGCTGAGC 60 4091615 4091633 TGTATCTGACCAGAAGCCG 59 NA DesignNoJunction Rattus norvegicus 81 Abcd2 ENSRNOG00000015538 ENSRNOT00000021064 2 1 1 80 7 132307933 132307954 GATTGGAAAGATGTCCTTTCAG 58 132301761 132307892 TGCGTACTTCGGTTTATGG 58 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 1 2 2 80 12 39590266 39590986 ATTACAATGAGGCGAAGGG 58 39591030 39591048 TCATCTTCTCTACCAGGCA 57 NA Rattus norvegicus 81 Olr1111 ENSRNOG00000031503 ENSRNOT00000043467 3 1 1 60 7 140108310 140108328 TTCTCGGTCCTCTACACAG 58 140108349 140108370 TCTTGAGACTGTAGATGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir802 ENSRNOG00000040376 ENSRNOT00000062129 2 1 1 60 11 33570291 33570311 CTTGTGTCGATCATACAGCAC 60 33570327 33570351 GGTGAAGGCTATTAATTACACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr5a2 ENSRNOG00000000653 ENSRNOT00000000812 3 1 1 80 13 53792439 53792459 CGTTCCCTTCAGTTTGATCAG 59 53753526 53792401 CTCAAGATTCTTGACATCTGAGC 60 NA Rattus norvegicus 81 Klhl17 ENSRNOG00000020302 ENSRNOT00000027547 2 1 1 80 5 173657551 173657569 ATGTGTATCGTGCAGTCCT 59 173657269 173657507 CACACTTCATCAGCCTTGG 59 NA Rattus norvegicus 81 Tgfbi ENSRNOG00000012216 ENSRNOT00000016390 1 1 1 80 17 8409099 8409118 TCTCCAACAAAGACATCCTG 58 8408310 8409056 ATGTCTTGGCTGAATCTGG 58 NA Rattus norvegicus 81 Llph ENSRNOG00000004316 ENSRNOT00000005794 1 1 1 95 7 65005966 65005984 AAATGCAGTGTGATGTCGC 60 65008694 65008713 CATGCTGGTCTAGAAGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Des ENSRNOG00000019810 ENSRNOT00000026860 2 1 1 80 9 82561904 82563322 CTCAACTTCCGAGAAACCAG 59 82563361 82563383 CTCAATGGTCTTGATCATCACTG 60 NA Rattus norvegicus 81 Nlrp10 ENSRNOG00000015082 ENSRNOT00000020393 3 1 1 100 1 173525481 173528919 TCATCTGTACAGTGGCTGG 59 173525399 173525417 TCCTCAAGGTCGTTCAAGG 59 NA InUTR Rattus norvegicus 81 RGD1564420 ENSRNOG00000009739 ENSRNOT00000013315 1 1 1 80 7 99666055 99666836 GATGGGAAACAACTTCTATGTG 58 99665996 99666016 TTCTCCTTCAATCTTCTGGTC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 3 2 18 82 1 43637345 43637363 GGCCCAGATCTTTACAGGA 59 43637409 43697833 CACAGGGTCTAGGTCTGTC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079628 3 1 18 104 1 43508754 43697823 CGAACTAACCACCAGACCT 59 43697888 43697909 TTATAGATTAATGCGGCTCCAC 59 NA InUTR Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089428 3 1 18 129 1 43508655 43508673 GAGTTCTGCATCCCAACCT 60 43508766 43516735 CTACTGACTGAGGCTCCTG 59 NA Rattus norvegicus 81 Rbm44 ENSRNOG00000024878 ENSRNOT00000038536 1 1 1 80 9 98302741 98302760 TTGAACCTTCGTAGCTTCAC 58 98302800 98302937 CTCTATAATGTGGTCTCTGCTG 58 NA Rattus norvegicus 81 Dusp14 ENSRNOG00000030091 ENSRNOT00000083300 1 1 1 167 10 71364961 71383524 GAGTACGTCCAGGAAGGAG 59 71364812 71364830 GAAATCATCCGAGGAGCCA 60 NA InUTR Rattus norvegicus 81 Nsun4 ENSRNOG00000046192 ENSRNOT00000016013 1 1 1 80 5 134892790 134892809 GGAACCACATTCGAGTTACC 59 134888684 134892753 CTACTAACACCTTATCATAGGTGTC 59 NA Rattus norvegicus 81 Prg3 ENSRNOG00000037908 ENSRNOT00000057616 1 1 1 80 3 72397088 72398718 ATAAGGCTCAGAAACTCTGC 58 72398760 72398779 GAACTTGGAAGTTGAAACCG 58 NA Rattus norvegicus 81 Hmgb1-ps3 ENSRNOG00000032420 ENSRNOT00000046626 3 1 1 60 7 132983993 132984013 ATGCTTCTGTCAACTTCTCAG 58 132983953 132983972 GACATGGTCTTCCACCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Isca1 ENSRNOG00000018343 ENSRNOT00000024781 2 1 1 80 17 5290841 5292839 TTATTCAAGACGGAGTCCGA 59 5292880 5292900 CTTCCACATAGTCCATCTCTG 58 NA Rattus norvegicus 81 Trabd ENSRNOG00000029095 ENSRNOT00000052087 3 1 1 80 7 130064490 130065041 GATGTAGTGAAGACTATCCGGG 60 130065082 130065100 CTTCAGCATGGAAACACGG 60 NA Rattus norvegicus 81 1190003K10Rik ENSRNOG00000050209 ENSRNOT00000072220 2 1 1 81 17 1999505 1999523 AGGAGATCCGCAAACAGAC 60 1994254 1999463 TCTTCTCTGAGCTTTCTCAGAG 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 2 2 2 80 11 86518130 86518148 CAACCGCAAGAACATCCAG 60 86518192 86518304 ACTGGCCTCAATCCATGTC 60 NA Rattus norvegicus 81 Mir349 ENSRNOG00000036516 ENSRNOT00000054623 3 1 1 77 7 130146590 130146610 ACTCTAGCATGTAAGGTTGGG 60 130146533 130146551 AGAGGTTAAGACAGCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr19 ENSRNOG00000007126 ENSRNOT00000009341 2 1 1 94 4 168656606 168656624 CATCCTCCAAAGTCCTGTG 58 168641315 168656551 TTTCCTCTTAGTTCTTCATGGG 58 NA InUTR Rattus norvegicus 81 St3gal1 ENSRNOG00000008209 ENSRNOT00000010980 3 1 1 80 7 107903135 107904178 CTTTGTGCTGAGGATGAACAG 60 107903075 107903093 TACACAAGATGGTGGGTGG 59 NA Rattus norvegicus 81 Nlgn2 ENSRNOG00000015430 ENSRNOT00000056872 1 1 1 80 10 56435497 56435515 CACCATCTTTGGGTCTGGT 60 56435326 56435453 TTCTGGAACAGCCCTTCTG 60 NA Rattus norvegicus 81 LOC100910410 ENSRNOG00000045544 ENSRNOT00000074821 3 1 1 80 9 16825896 16826319 ATCTCTTTACTGCCTTGTGCT 60 16826360 16826379 GTTATGCAAGGACACAGCTC 59 NA Rattus norvegicus 81 Loxl3 ENSRNOG00000061373 ENSRNOT00000081196 2 1 1 80 4 113882059 113882186 GTCATCTGTTCTGAGACTGC 58 113882227 113882247 CGGTCGGTCTTCAATATAAGC 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 3 2 2 80 19 10341168 10341413 ACAGGAGATATCAAGACATCGG 60 10341109 10341130 GACAATATTCAGAAGGTCCACG 59 NA Rattus norvegicus 81 Pura ENSRNOG00000019062 ENSRNOT00000025756 1 1 1 60 18 29111043 29111062 CACACCTTCTGCAAGTACTC 59 29111085 29111103 GCTTCTCCCTCTGCTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 3 3 3 80 1 214154476 214154494 TTCCATGAGGCTGGTATCC 59 214154339 214154434 GTTCTCCAGTTTGAGTGACTC 59 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 2 2 2 80 4 155674308 155674829 CCATCTATGAACCAAGTGAACTC 59 155674868 155674887 GATTGGGTACATTGGTGCTG 59 NA Rattus norvegicus 81 Olr1406 ENSRNOG00000029930 ENSRNOT00000048759 1 1 1 60 10 36486372 36486392 GCATCCTTCTTCCTCATACTC 58 36486413 36486432 CACCACAGTGAAGATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng6 ENSRNOG00000057852 ENSRNOT00000081837 1 1 1 84 1 64313788 64315419 CAAGAAAGAGGTAAACCTGGC 59 64313724 64313742 CATGATGACACAGAGGCAG 58 NA Rattus norvegicus 81 Cacng6 ENSRNOG00000057852 ENSRNOT00000081837 3 1 1 85 1 64313789 64315420 CCAAGAAAGAGGTAAACCTGG 59 64313724 64313742 CATGATGACACAGAGGCAG 58 NA Rattus norvegicus 81 Olr1545 ENSRNOG00000055575 ENSRNOT00000081261 3 1 1 60 11 43432188 43432209 TTCTATTCATGTATGTGCGTCC 59 43432226 43432248 GAGTCCATCATATCCTGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm25l1 ENSRNOG00000002871 ENSRNOT00000003832 2 1 1 60 10 10458967 10458988 GAGATGACCCAAAGTACTACAG 58 10459009 10459027 TTCTCCCTATCACGCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox7c ENSRNOG00000030237 ENSRNOT00000051895 3 1 1 108 2 14701731 14701749 GTATCCGGAGGTTCACCAC 60 14700895 14700914 ATCATAAGCAGTAACCGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Rnf225 ENSRNOG00000038445 ENSRNOT00000058574 2 1 1 84 1 65659513 65659915 GAGGAGGTCTACAGGTCCA 60 65659447 65659465 AGGACTAGAACCCTGGGAG 60 NA InUTR Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 2 1 1 60 11 71755647 71756062 GGTTCACCTCAATGGAACTG 59 71755606 71755624 AAGCAAATGAGGACCTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Tshb ENSRNOG00000016793 ENSRNOT00000022575 2 1 1 81 2 205208114 205208512 GTATGACACGGGATATCAATGG 59 205208054 205208076 GTGAAGTCTCTGTATGTACAGAC 59 NA Rattus norvegicus 81 Prdm14 ENSRNOG00000021792 ENSRNOT00000034525 3 1 1 85 5 5718212 5730341 CTGCACGAAGAAGTTCACC 59 5730390 5730408 AGTGTTTGCACTTGAAGGG 59 NA Rattus norvegicus 81 Cyc1 ENSRNOG00000012457 ENSRNOT00000017067 1 1 1 88 7 117411507 117411525 AAGTAGCCAAGGATGTTGC 58 117411576 117411677 CAACAACATCTTGAGTCCCA 58 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910,ENSRNOT00000091227 1 2 2 80 7 30078751 30095286 CTGCAAAGGTTTCTTCCGA 58 30078689 30078707 ATATCCATCACGCAGTTGC 58 NA Rattus norvegicus 81 Sebox ENSRNOG00000009979 ENSRNOT00000013296 3 1 1 132 10 65772770 65772946 AAGATCCAGGTGTGGTTCC 59 65773042 65773060 CAGGGTCCCAAGATAGCTG 60 NA Rattus norvegicus 81 Ttc37 ENSRNOG00000040297 ENSRNOT00000062017 3 1 1 80 2 2941559 2942041 AAGCAGAAACGAGTTTCCA 58 2942085 2942103 AGTATGTCAACCCAAGCTG 58 NA Rattus norvegicus 81 Pik3r5 ENSRNOG00000023428 ENSRNOT00000032785 1 1 1 80 10 55077112 55077340 CAGATTATTTACAGCAAGGGAG 57 55077381 55077399 GAGGTTAACAGAGGTGCAG 58 NA Rattus norvegicus 81 Prcp ENSRNOG00000010630 ENSRNOT00000014271 2 1 1 80 1 157701294 157730348 TTACTTCCAACAGAAGGTTGAC 59 157730385 157730407 TGTTTATCAGCTACTAGGTACCG 60 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000080940,ENSRNOT00000045763 1 2 2 80 9 17930134 17930154 TTCCCAGAACAGAGTAAAGAG 57 17930195 17931421 TTTCTCATAAGGTCCCAGTG 57 NA Rattus norvegicus 81 Mir1193 ENSRNOG00000041604 ENSRNOT00000063357 1 1 1 60 6 133864756 133864774 TTATGCTGTAGGTCACCCG 59 133864798 133864816 GTATCATCCCACAGACGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lim2 ENSRNOG00000017681 ENSRNOT00000023858 3 1 1 106 1 98500404 98500422 CCATTGGATGCAATACCGG 59 98497609 98500334 TCCAGTATGCGATGCTCTC 59 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 1 1 2 80 1 85499565 85499701 GCCTTCGGTACATTCTACTG 58 85499842 85499860 GGGTAGCTCTTTCCTCCTC 59 NA Rattus norvegicus 81 Colgalt2 ENSRNOG00000028207 ENSRNOT00000030109 3 1 1 80 13 69896008 69899170 CTGGGAACTGATTTACATCGG 59 69899210 69899230 ACGAGATTTACAACATTGGGC 59 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 1 2 2 80 4 168221646 168230127 GACCTGTAGTGCTCCTACC 59 168221584 168221605 CTCTGTTGTTCATCAATCACCA 59 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000018487,ENSRNOT00000086385 1 2 2 80 1 218515871 218516136 GACACCTTCTGAAGGACCTC 60 218515810 218515828 AGCCAGCTGTGTCTATGAG 59 NA Rattus norvegicus 81 RGD1559896 ENSRNOG00000018836 ENSRNOT00000025512 3 1 1 80 19 57400519 57409860 GGAGACAAGGAGTCAAATGG 58 57400458 57400478 GTATCATTGGTCATAGTGGCA 58 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126,ENSRNOT00000080818 1 3 3 81 3 121828066 121828090 GACTCTCAAAGTCTCAAATACTCAG 59 121826009 121828027 TTCCGGAATCTCCTTCAGC 60 NA Rattus norvegicus 81 Dync1li1 ENSRNOG00000010434 ENSRNOT00000014532 2 1 1 80 8 122760424 122760445 ATAGAGGAGTACAAGAAGGGAC 59 122760484 122761165 TCTTGTTTGATCATCCCTGTC 58 NA Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000078502 3 1 2 81 5 64790195 64790595 CTGGACTCAAGGAGGAGTG 59 64790638 64790658 TTTCCATAACTGTCCATCACG 59 NA Rattus norvegicus 81 Pigy ENSRNOG00000052134 ENSRNOT00000078067 1 1 1 99 8 23168015 23168774 GCCAGTGAATGTAAGGAATCC 59 23168835 23168853 TCTGATCCAATCCACCACC 59 NA InUTR Rattus norvegicus 81 Pigy ENSRNOG00000052134 ENSRNOT00000078067 2 1 1 99 8 23168016 23168775 CCAGTGAATGTAAGGAATCCT 58 23168836 23168854 TTCTGATCCAATCCACCAC 57 NA InUTR Rattus norvegicus 81 Mustn1 ENSRNOG00000017369 ENSRNOT00000023330 1 1 1 99 16 6964049 6964068 AAGGAAGAAGACCTGAAGGG 59 6964130 6964324 AGCCAGCTTGCTCATAGTC 60 NA Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 3 2 2 82 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692906 118692924 AGTCTGACTTTGTCCTCCC 59 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 3 1 1 95 16 9074176 9074195 CAGACACCAATCAATGGGAC 59 9074253 9075396 ATTCCTCCTCATGGTCCCT 60 NA DesignNoJunction Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841,ENSRNOT00000030327 2 2 2 81 1 28544119 28551389 AGTTAGTTCAGCTAGAAGAGGA 58 28551428 28551449 TGTTTGATCTCAACCAGATGTC 59 NA Rattus norvegicus 81 LOC100912253 ENSRNOG00000045569 ENSRNOT00000074667 2 1 1 80 17 15408557 15408576 GGTTCCTGAGAAAGAGACCA 59 15408156 15408517 CTCCAGAATAAGTCAGAACCAC 59 NA Rattus norvegicus 81 Mcur1 ENSRNOG00000017988 ENSRNOT00000024206 2 1 1 80 17 24173782 24173801 GCATTGGTCAAGATTACGGA 58 24173193 24173740 AAGAGTGATTTCCTGTTGCA 58 NA Rattus norvegicus 81 Lsmem1 ENSRNOG00000039110 ENSRNOT00000059823 1 1 1 80 6 60121228 60121249 TATGTCGTGGATTCCATAAACG 59 60119592 60121192 CTCCTCTAAAGAGAATAGATGCTG 58 NA Rattus norvegicus 81 Plxna3 ENSRNOG00000060464 ENSRNOT00000083148 2 1 1 80 X 156371132 156371155 CACTGGAGTCATCTATACCTACAC 60 156370811 156371094 GTGCTTCCATTGATGATGCT 59 NA Rattus norvegicus 81 Jagn1 ENSRNOG00000009175 ENSRNOT00000012177 2 1 1 80 4 145400098 145403644 TGCACTACCAAATGAGTGTG 59 145403687 145403705 CCAACAGCAGCCATATGAC 59 NA Rattus norvegicus 81 Brap ENSRNOG00000046497 ENSRNOT00000072481 2 1 1 80 12 40383722 40383745 TTCTATCCTGGAGACCAGC 58 40383660 40383678 AATGTTGATCTGCCCTTCC 58 NA Rattus norvegicus 81 Crebbp ENSRNOG00000005330 ENSRNOT00000007079 1 1 1 80 10 11678987 11680450 GAATGCTCTAGGAAACAACCC 59 11680491 11680510 TCTGAAATCAAGTTTGGCGG 59 NA Rattus norvegicus 81 Ampd1 ENSRNOG00000018656 ENSRNOT00000025248 1 1 1 80 2 205581418 205582437 TTTATAACTGCAGGAAGGTGG 58 205582478 205582497 TCTTAATAAAGCGCAGCAGG 59 NA Rattus norvegicus 81 Kcnd1 ENSRNOG00000039544 ENSRNOT00000011994 3 1 1 84 X 15513668 15519605 ATGACCACACTTGGGTATGG 60 15513603 15513622 AGACACCACTAAGTGAGCAG 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713,ENSRNOT00000065521 1 2 2 80 13 69778366 69780803 ACCCTAAGTACTTAGAGATGATGG 59 69778309 69778330 GATCCAGGTAAACCAAGAATGC 60 NA Rattus norvegicus 81 Lamc2 ENSRNOG00000002667 ENSRNOT00000036947 1 1 1 80 13 70574819 70575328 AAGGACAGAAGACAGACTTCG 60 70574759 70574778 CATACTTAGCGCTTCTTGGG 59 NA Rattus norvegicus 81 Lamc2 ENSRNOG00000002667 ENSRNOT00000036947 3 1 1 80 13 70590097 70590117 TCGAGTATCGAAGGTTACTGC 60 70589174 70590060 CAATGTACCCTGTACTGTATTCTC 59 NA Rattus norvegicus 81 Ddx28 ENSRNOG00000019817 ENSRNOT00000026817 3 1 1 60 19 37989696 37989714 ACCTTCCCGAGAATTAGCC 59 37989654 37989674 CAAGTACCTACCCAATGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc6 ENSRNOG00000036601 ENSRNOT00000054748 1 1 1 80 1 256284973 256286627 ACTACACCGAAGCTCTACAG 59 256286669 256286688 CAGCTACTCAGAATCCTGGT 59 NA Rattus norvegicus 81 Exoc6 ENSRNOG00000036601 ENSRNOT00000054748 3 1 1 80 1 256272410 256272560 ATTGTAGGGTTCTTTGTTGTGG 59 256272600 256272619 GAGTTCATCAGTGTATGCCC 59 NA Rattus norvegicus 81 AABR07062859.1 ENSRNOG00000031564 ENSRNOT00000052280 1 1 1 60 6 11859682 11859700 CTGATGTTGGTGTCATCCC 58 11859640 11859658 TTCTGTCGTCCTTTCTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciapin1 ENSRNOG00000016234 ENSRNOT00000021769 1 1 1 80 19 10605823 10605842 TGTTGTGGATCCTGCTACTG 60 10605883 10607535 GAGTCAATGAGATCCATGCTG 59 NA Rattus norvegicus 81 RGD1562929 ENSRNOG00000050799 ENSRNOT00000056321 2 1 1 60 9 117867256 117867274 ACATCAAGCACCCAAACAG 59 117867214 117867234 TTCTGATCGTTCTCCTTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 3 1 1 64 7 5655691 5657534 ATGACCAACAACTGCAGGT 60 5657560 5657580 AGTTATGCTCAGTGAGTAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 1 2 3 80 17 30623119 30625418 TTTCACAGGAGTTGGTGAC 58 30625462 30625480 TTGTCCTGTATTTCACCGG 58 NA Rattus norvegicus 81 Olr1453 ENSRNOG00000029615 ENSRNOT00000040655 1 1 1 60 11 55475648 55475667 TTCTACACCATCTTCACACC 57 55475689 55475708 CCTCCTTGTTTCTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307595 ENSRNOG00000011239 ENSRNOT00000014928 2 1 1 99 2 138194453 138194471 CATGCTTCTCAGTCAGCAG 59 138194534 138197269 GATCAGAAATGTTCCCGGC 59 NA InUTR Rattus norvegicus 81 Tdgf1 ENSRNOG00000037171 ENSRNOT00000040840 2 1 1 89 8 119218169 119218187 ATAACGACATTCGGGACCA 59 119217675 119218119 GCAACTTATTGCTCTGTATCCC 60 NA Rattus norvegicus 81 Abcc10 ENSRNOG00000018863 ENSRNOT00000025598 3 1 1 80 9 17046105 17046124 CTGTAGTCATCTGCATCGTC 58 17046167 17047212 GTGCTGTAAACACCTTGGT 58 NA Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 3 2 2 96 7 121299762 121300066 ATTGCTCACACTCAGATGC 58 121299684 121299703 CTAGCTTCTCAGCTACAGTG 58 NA Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 1 2 2 80 10 55629647 55629666 TGTTAGGTCTACAGGGAGAG 58 55629709 55630893 ACATGGTCTTCCTCCTCAG 58 NA Rattus norvegicus 81 Pllp ENSRNOG00000016558 ENSRNOT00000022277 3 1 1 85 19 10748545 10748566 TGTCTTCTTCATCATCTACCTG 57 10748609 10750784 CAACAAAGAAGACCAGTAACAC 58 NA Rattus norvegicus 81 LOC100910839 ENSRNOG00000021507 ENSRNOT00000033811 3 1 1 80 1 113468571 113468591 CAACCCAGATGTTACATCCAC 59 113468633 113513655 AACTTTGTTGTGGCTTGCT 59 NA Rattus norvegicus 81 Senp6 ENSRNOG00000024336 ENSRNOT00000015741 3 1 1 80 8 87521071 87521089 AATACCCACCTCATGTCCA 58 87521132 87525540 TCTTCATTACATGGTCTCCG 57 NA Rattus norvegicus 81 Kcnf1 ENSRNOG00000024310 ENSRNOT00000033327 3 1 1 60 6 42472908 42472930 GTATACTATTTCGGTGAGGTCCA 60 42472870 42472889 CGTTCTTGAAGCAGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tecta ENSRNOG00000031126 ENSRNOT00000052293 1 1 1 80 8 46663827 46663845 ATCAACTGGACTACTGGGA 57 46663470 46663783 ATTAAATCCTGCCTGTGCC 58 NA Rattus norvegicus 81 Irak1 ENSRNOG00000060869 ENSRNOT00000092207 1 1 1 80 X 156718187 156718431 GAACAGCTATCAAGGTTTCGT 59 156718473 156718491 AACAAGGCAGTAGAAGCCA 59 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 2 2 2 80 10 87225550 87225902 GAAACCAAAGCAAAGATTCCC 58 87225490 87225509 TTAGAATCTTGCTGCGTTGG 59 NA Rattus norvegicus 81 Enpp5 ENSRNOG00000010232 ENSRNOT00000013703 3 1 1 88 9 19472995 19473013 GAGTTCAACCGATCGTAGC 58 19470649 19472945 ATAACCATGGTTGCCTAACAG 58 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000031024 ENSRNOT00000042759 1 1 1 89 2 76923930 76926012 GAGTTGTCAGTATTTGTAGCAG 57 76926062 76926080 AGTAACTGATCCTCCAGCA 58 NA Rattus norvegicus 81 Nfkbie ENSRNOG00000019907 ENSRNOT00000026988 1 1 1 85 9 17830613 17831612 GAAGAACTGGCAAGGTCTG 59 17830546 17830564 CTCCATTCTGAAGCAGCAG 59 NA Rattus norvegicus 81 Nfkbie ENSRNOG00000019907 ENSRNOT00000026988 2 1 1 99 9 17830160 17830178 AACAGCATCTCGTCCACTC 60 17828787 17830097 AAGAAAGGAGATCCTCGGC 59 NA Rattus norvegicus 81 Dpagt1 ENSRNOG00000009799 ENSRNOT00000013134 2 1 1 80 8 48662952 48662971 ATTTCCTCTACTCACTGCCT 58 48663012 48663537 CTGTCTTCGTATTGAGTCTGG 58 NA Rattus norvegicus 81 Glp2r ENSRNOG00000003683 ENSRNOT00000004946 2 1 1 80 10 54297415 54297435 GGTCTCCCACAACTCTTACTC 60 54294801 54297373 CAGGAGACGGATGTCTCTG 59 NA Rattus norvegicus 81 LOC100359668 ENSRNOG00000033776 ENSRNOT00000042177 2 1 1 60 6 76652359 76652377 TGACTTCTTGGAAAGCCAC 58 76652317 76652337 GTTGCCCATCTTCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007544.1 ENSRNOG00000048330 ENSRNOT00000073727 3 1 1 87 2 17939769 17939792 CCTTCAAGAATTACAGGAGAACAC 60 17939681 17939701 CAATTCCTTTACTGGCATGCT 59 NA DesignNoJunction Rattus norvegicus 81 Atp5s ENSRNOG00000004893 ENSRNOT00000006509 1 1 1 80 6 92072664 92074841 TGCGACACTTTAAGAACCTC 58 92074884 92074902 AGACTTCGGCAAGGTACTC 59 NA Rattus norvegicus 81 Ap4b1 ENSRNOG00000019455 ENSRNOT00000026382 2 1 1 80 2 206296941 206296960 ATATGTCAGAAGAGTGGCCG 60 206297000 206297374 ACTAGAGCACCATCTACTTCAG 59 NA Rattus norvegicus 81 Col5a3 ENSRNOG00000020525 ENSRNOT00000027897 2 1 1 80 8 21787574 21787920 CGAGGGAAGAAGTTCTCCT 58 21787512 21787531 GCTCAACAACTTCAGGAAGG 59 NA Rattus norvegicus 81 Vom2r68 ENSRNOG00000033073 ENSRNOT00000044004 1 1 1 80 14 1109088 1109991 CATTAACTGTCAGCAGGTGG 59 1110031 1110052 TGATTCATGTTCACCAGTTCTC 59 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 2 1 1 75 8 40160154 40160465 AAGAACCTGGGAAACAGAG 57 40160097 40160115 CAGGACTGGTATGACTGAC 57 NA DesignNoJunction Rattus norvegicus 81 G6pc3 ENSRNOG00000020902 ENSRNOT00000028375 1 1 1 81 10 90134574 90136375 CTTCAAGTGGTTTCTGTTTGG 58 90136418 90136436 AATCTGGACTGGAGTCTGG 58 NA Rattus norvegicus 81 G6pc3 ENSRNOG00000020902 ENSRNOT00000028375 2 1 1 81 10 90134575 90136377 TTCAAGTGGTTTCTGTTTGGAG 59 90136418 90136437 GAATCTGGACTGGAGTCTGG 60 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000039050 ENSRNOT00000040023 2 1 1 80 3 25211805 25212046 TCAACATTGGTGAAGTGCTC 59 25211744 25211762 ATGCTCAGATTTGCTGCTC 59 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 1 2 2 80 16 54024577 54024702 GGTGGTTATCTGGGTATCCT 58 54024740 54024763 CAGAACTGATCTAGTGATAAACCC 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927,ENSRNOT00000088469 3 2 2 82 14 78691208 78698848 ATCGGAGCTTCAACATCGT 60 78691144 78691162 CGGATGGAACTCAGATGCT 60 NA Rattus norvegicus 81 AC126537.1 ENSRNOG00000057901 ENSRNOT00000085758 1 1 1 80 7 117029968 117030298 GAATGAACTGGGATGCTGTG 59 117030341 117030359 CATTTGTCAACCCATGGCT 59 NA Rattus norvegicus 81 AC126537.1 ENSRNOG00000057901 ENSRNOT00000085758 3 1 1 80 7 117029968 117030298 GAATGAACTGGGATGCTGTG 59 117030340 117030359 CATTTGTCAACCCATGGCTC 60 NA Rattus norvegicus 81 Olr1072 ENSRNOG00000008460 ENSRNOT00000011176 3 1 1 60 7 9630184 9630202 CCATCTGCAATCCTCTCCT 59 9630142 9630162 ACCAACTGGACACAGATACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkp4 ENSRNOG00000005504 ENSRNOT00000059246 3 1 1 80 3 45381797 45383068 AGTGAAGATGGAGGTGTACAG 59 45383109 45383128 TTCTGAACTTCCAACACCCT 59 NA Rattus norvegicus 81 Bcas2 ENSRNOG00000018783 ENSRNOT00000025592 3 1 1 80 2 205669315 205669333 AGGATTTAAACTGGCAGCG 59 205669377 205670039 GCGACACCCAATTTGACTC 60 NA Rattus norvegicus 81 Rn60_1_1353.1 ENSRNOG00000051335 ENSRNOT00000076599 2 1 1 60 1 134195283 134195301 CAGAACTGCTGCCTTTGAC 60 134195321 134195343 CCATTTCTCTACTGTGATGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702,ENSRNOT00000015632 2 2 2 82 17 9314154 9320749 GGAAGTCTAAGAAGCAGGGA 59 9320794 9320812 AGTAAAGCCGTCTGTAGGC 60 NA Rattus norvegicus 81 Prg4 ENSRNOG00000002385 ENSRNOT00000068148 3 1 1 80 13 67673775 67674137 AGACAAAGGCTTCCTCCAC 60 67673713 67673732 GTTATCGCGGAAGTAACGAC 59 NA Rattus norvegicus 81 Fbxo33 ENSRNOG00000005285 ENSRNOT00000059316 1 1 1 80 6 80306673 80306692 ACAACCGAAATGAAGATCCA 58 80304306 80306630 CGGTGTAACCATGAATTGC 57 NA Rattus norvegicus 81 Lrrfip1 ENSRNOG00000019892 ENSRNOT00000050191 1 1 1 83 9 98240808 98245071 CAGGGAGATCAAGGACTCTC 59 98245117 98245135 TTCTCGTTGTCTAGCTGGG 59 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 2 2 2 80 11 17549422 17549443 CCTTTACCAGTGGAATGATGAC 59 17549482 17553325 TCTGTTGGATGAATCTCTGGT 59 NA Rattus norvegicus 81 Pdgfb ENSRNOG00000017197 ENSRNOT00000023196 2 1 1 80 7 121222205 121224295 GACTCCGTAGACGAAGATGG 60 121222144 121222162 AGATGAGCTTTCCGACTCG 60 NA Rattus norvegicus 81 Olr1092 ENSRNOG00000046735 ENSRNOT00000042742 1 1 1 80 7 15706418 15706438 GGTTGGTGGATCATTTATGGG 59 15524347 15706377 TGATGGATCTCATTGGGTCC 59 NA Rattus norvegicus 81 Olr1092 ENSRNOG00000046735 ENSRNOT00000042742 3 1 1 81 7 15706419 15706439 GGGTTGGTGGATCATTTATGG 59 15524347 15706377 TGATGGATCTCATTGGGTCC 59 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 3 2 2 80 13 73702259 73702277 GAACCTTCTTCCCAACCTG 58 73700332 73702217 TTCACTCATCACTGAAGTCTC 58 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076780,ENSRNOT00000015084 1 2 3 80 1 136673095 136675745 CTACCTTCTACAACACAGACCT 59 136673036 136673054 CCTTCTGCTCCAGAAAGGT 59 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191,ENSRNOT00000079410 1 2 2 80 7 66667500 66669015 GAGCATTTAAGACACAAGTAGG 57 66669055 66669074 AAGCTAGTAGTTCTTGGCAG 57 NA Rattus norvegicus 81 Cdkl1 ENSRNOG00000038720 ENSRNOT00000006374 2 1 1 80 6 92088347 92091151 TGCCATAAACACAACTGCA 58 92088285 92088305 ACAGAGCTTAATGACTGAGTG 58 NA Rattus norvegicus 81 Sdsl ENSRNOG00000001391 ENSRNOT00000001882 3 1 1 82 12 41644519 41644537 GTAAGGGCACAAGAACTGG 59 41644582 41645221 GCATTGCCTTCCCATATCAG 59 NA Rattus norvegicus 81 Lhfpl2 ENSRNOG00000011032 ENSRNOT00000014795 2 1 1 85 2 23827752 23848447 GAATCGCAGGTCTGTTCCT 60 23848495 23848514 ATATCGTCCACAGTCGATGG 60 NA Rattus norvegicus 81 Srgap3 ENSRNOG00000006509 ENSRNOT00000009066 3 1 1 80 4 144692062 144693372 CTCTGATCTCATCGATTGCT 57 144692001 144692020 TATTCTGCTGAGAGGTAGGT 57 NA Rattus norvegicus 81 Hipk1 ENSRNOG00000019333 ENSRNOT00000056079 1 1 1 80 2 206234010 206234687 GTCTCATCCACATCTTCTCTG 58 206233950 206233968 AGATGTGGTACGAAGAGGA 57 NA Rattus norvegicus 81 Cd38 ENSRNOG00000003069 ENSRNOT00000004121 1 1 1 80 14 71718124 71718144 AATGAGCTGAAGTCGATTGTG 59 71716639 71718085 CTGAAGAAATCTTACAGGTCGG 59 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 3 1 1 113 7 102589128 102589146 CTCTTCTTCCTCGGACTCG 59 102589223 102590240 TCTTCTTCAGAGTCGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Phf12 ENSRNOG00000009566 ENSRNOT00000056234 2 1 1 80 10 64818653 64819939 CACAGAAGTGCAAAGGAAGG 60 64818592 64818610 CACATGTTCACAGCTCCTC 59 NA Rattus norvegicus 81 Crls1 ENSRNOG00000021273 ENSRNOT00000028900 2 1 1 80 3 125506943 125511543 GGGCTAACGGATTTGTTGG 59 125511587 125511605 TGGATCAAGAGCACTTCCC 59 NA Rattus norvegicus 81 Abcb9 ENSRNOG00000001082 ENSRNOT00000045223 1 1 1 81 12 37947251 37955631 GAATACCTGATTCAGCAGGC 59 37955675 37955693 CTACAGTACTCAGCCGGTG 60 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 1 2 2 80 13 68754397 68756583 GAAAGCAGAAGTACCACCT 57 68754335 68754354 ATGCGTTCAAGTAGAATGGA 57 NA Rattus norvegicus 81 AABR07051670.1 ENSRNOG00000047535 ENSRNOT00000070878 1 1 1 116 3 19045255 19045444 TATCACAGTCACAGTGTCCA 58 19045523 19045541 TAGCTTACACTGGAGCTGG 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000077874 2 1 2 64 13 73708897 73718241 AACCTGGCTGGAAATTGTG 59 73718269 73718287 AGAAGTTGCTGGTGTTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rab15 ENSRNOG00000007364 ENSRNOT00000010043 1 1 1 80 6 99849912 99849931 ATCCTCATCGGGAATAAGGC 60 99848693 99849869 ATACTCCTTAGCCAGCTGC 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913 2 2 3 80 1 168945646 168945665 GCTACTGTTAATGGCCTGTG 59 168945706 168945845 GTAGACAATAAGCAGACTGGC 59 NA Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 2 2 2 80 9 25428542 25430357 TCCTCAGAAGAGCCAAATCG 60 25430400 25430418 CCGCGGGTAAATTCAAACC 60 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 3 2 2 80 16 84850586 84850605 TGTTCCTAGCTTAGCACAGG 60 84842313 84850544 AGAGGACTGAGCTTACTGGA 60 NA Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905,ENSRNOT00000057788 3 2 2 83 12 38291552 38291573 GTGAATCCCATGAAATTTGCTG 59 38291617 38292110 AGACTGAGATTTGTCGCCT 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395,ENSRNOT00000079371 1 3 3 80 5 136028646 136031702 AGATCATACAGCAAGGACCA 59 136028585 136028603 TCACGAAGGTCTCCAAGTC 59 NA Rattus norvegicus 81 Art4 ENSRNOG00000005670 ENSRNOT00000007485 3 1 1 98 4 170838150 170838168 TGAGTAAGAACTGCAGCCT 59 170832232 170838088 TCTTGCTGGAAGCTTTCAG 58 NA Rattus norvegicus 81 Praf2 ENSRNOG00000057147 ENSRNOT00000085397 2 1 1 62 X 15620708 15620728 CAACAACCTCCTCTACTACCA 59 15619644 15619662 CAGGAACAAGAGCACTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Arrb2-ps ENSRNOG00000052437 ENSRNOT00000090505 3 1 1 60 20 4121049 4121067 CCTCAATGTCAACGTCCAC 59 4121090 4121109 CACTCTGATCTTCTTGACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Isx ENSRNOG00000039808 ENSRNOT00000061079 1 1 1 90 19 14215553 14215571 TTCCACTTCACCCACTACC 59 14215624 14217391 GGAACCAGATCTGTACTCGA 59 NA Rattus norvegicus 81 F13a1 ENSRNOG00000015957 ENSRNOT00000021568 1 1 1 80 17 28580341 28580362 CATCGGAGTGATATTTCATGGG 59 28580402 28583723 AGGATGCCATCTTCAAACTG 58 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000079152 1 1 2 80 13 74462844 74470798 GACTTTCATCAATGAAGGACCA 59 74470837 74470857 ATCATGTAAATCCCACTGGCT 60 NA Rattus norvegicus 81 Hmox1 ENSRNOG00000014117 ENSRNOT00000019192 3 1 1 80 19 14512104 14513632 AACATTGAGCTGTTTGAGGA 58 14513674 14513693 AAGAAACTCTGTCTGTGAGG 57 NA Rattus norvegicus 81 Kif6 ENSRNOG00000011453 ENSRNOT00000015584 3 1 1 80 9 13232897 13232915 CAACAACTGAGGAGGAAGC 59 13210288 13232854 CTTGATTCATGGGAGTCTCG 58 NA Rattus norvegicus 81 LOC691485 ENSRNOG00000013097 ENSRNOT00000017504 3 1 1 130 6 137068575 137068593 AGTAGATGAGGTCTGCAGC 59 137068687 137070505 CTTCCTGTCGTCATCCCTC 60 NA InUTR Rattus norvegicus 81 Zbtb12 ENSRNOG00000000418 ENSRNOT00000000476 3 1 1 60 20 4573349 4573367 GTTTCCTCTGGACGAGGAC 60 4573391 4573409 CTCGTCCTCATCCTCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr59 ENSRNOG00000018606 ENSRNOT00000025097 2 1 1 84 1 167908343 167911399 CAATTTCCAGGCTGTTCCT 58 167908277 167908295 GTGAGTGAAGTTGCAGGAG 59 NA InUTR Rattus norvegicus 81 Sult6b1 ENSRNOG00000049335 ENSRNOT00000075000 1 1 1 80 6 1480878 1480899 TCACCAAGAATTCTGACAACTC 59 1477758 1480839 CACCAATATCTTGGCTTTGCT 59 NA Rattus norvegicus 81 Acbd4 ENSRNOG00000003108 ENSRNOT00000004163 1 1 1 80 10 91188457 91188547 GACGTTACAAGTGGGATGC 59 91188591 91188609 TCATCTCCGTGATGTAGGC 59 NA Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000091558 2 1 2 104 14 6783549 6786066 GGGAAAGTGTCACAAGCTG 59 6783463 6783481 TCTGTTCCTTTACCCACCG 59 NA Rattus norvegicus 81 Mpdu1 ENSRNOG00000012162 ENSRNOT00000017201 1 1 1 80 10 56262904 56262923 CTGTTCCTGACACTACAGAC 58 56262747 56262861 GAAAGCAACTCCTTTCACG 57 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518,ENSRNOT00000091264 3 2 2 103 6 26541887 26541906 AACCTGAGACGTTCAGACAG 60 26541632 26541736 CTCAGTTTACTTGAGAGTTTGACC 60 NA Rattus norvegicus 81 Dera ENSRNOG00000007570 ENSRNOT00000009998 3 1 1 89 4 171821479 171821497 GAAACAGTAAACGCCACCT 58 171821549 171825291 AAAGCCTACCTTGTTTCCAG 58 NA Rattus norvegicus 81 Triml2 ENSRNOG00000028299 ENSRNOT00000033652 1 1 1 80 16 52117509 52119650 GGCTCCAAAGACATATTACTCTG 59 52117451 52117469 ATGCCACATGTCTCAGGTC 60 NA Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000088320 3 1 2 81 8 55505669 55506234 TGTGCTGTAGGTATGGTGAG 59 55506276 55506296 TGAGCTAATTCCCAGTTCTCC 60 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000084053,ENSRNOT00000078412 2 2 4 80 20 12855154 12855175 TTGCTACCTATGAGACTAAGCG 60 12854530 12855117 CAATCATGATGTCTCCAAAGACC 60 NA Rattus norvegicus 81 Thyn1 ENSRNOG00000047053 ENSRNOT00000073373,ENSRNOT00000085997 2 2 2 80 8 28050159 28050179 AACTTAAGCAACTACTGGCTG 59 28050219 28051624 CTCGATGCTGAACTTCATGTC 60 NA Rattus norvegicus 81 Mir336 ENSRNOG00000035459 ENSRNOT00000053582 1 1 1 60 10 35349769 35349790 TCTCACCCTTCCATATCTAGTC 58 35349810 35349829 CACATCCCTTCATGGAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RragB ENSRNOG00000050535 ENSRNOT00000075249 1 1 1 80 X 19361181 19365757 GTGCAACAATACTAGACCGT 58 19361120 19361140 TTCCAACAGAGTCTACGAGAG 59 NA Rattus norvegicus 81 Jph1 ENSRNOG00000006110 ENSRNOT00000008153,ENSRNOT00000085564 1 2 2 86 5 1500129 1500150 GAAGTCTGAACTTGCTATACCA 58 1500197 1506534 GAATTAGGGCCGGAATTGG 59 NA Rattus norvegicus 81 LOC100910708 ENSRNOG00000027433 ENSRNOT00000013133 1 1 1 89 4 62028076 62028096 CTGATCCGGTTCCATATAGAG 57 62028145 62028703 GTCAAAGACCTGAATGTTCTC 57 NA Rattus norvegicus 81 Cep350 ENSRNOG00000003882 ENSRNOT00000005235,ENSRNOT00000005195 3 2 2 81 13 73585023 73588233 TTCAGTTCGCAGATGATACC 58 73584961 73584980 TTTCGTACTGGTTTGACCAC 59 NA Rattus norvegicus 81 Zfp53 ENSRNOG00000042347 ENSRNOT00000015343 3 1 1 257 1 61375987 61376007 CATCAGAGGGTTCATACTGGA 59 61377453 61377477 GGTATACTTTAGCATGGTTTCTCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Med11 ENSRNOG00000019384 ENSRNOT00000085810,ENSRNOT00000026335 1 2 2 129 10 57057749 57057913 CAGGAACAGCAATCCTGGA 60 57058006 57058024 GTGAGGTAGCGGATCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Plp2 ENSRNOG00000039496 ENSRNOT00000045256 1 1 1 80 X 15680772 15680884 CTTGGACCGACTTCTTCAG 58 15680928 15680946 CTCGTCCTTCTACAAGGAC 57 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000087090 2 1 2 89 6 105395476 105395494 GGCCTTCTATCATCTTGGG 57 105395547 105397431 TGTATCCTGACCCTCACTG 58 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 3 2 2 80 4 34671777 34674303 GCTAGCAACATATCAGACCA 58 34671716 34671734 TTGAAGCTCTCATGGATGG 57 NA Rattus norvegicus 81 Tenm2 ENSRNOG00000027341 ENSRNOT00000011922 3 1 1 80 10 20998308 21005448 GTTGTCTTAGATTCAGTGCAGG 59 20998249 20998268 GAAACAGTGACACAGTCCAG 59 NA Rattus norvegicus 81 Sh3rf1 ENSRNOG00000010358 ENSRNOT00000013816 3 1 1 82 16 32120861 32120880 AGTGCAAAGCACTTTATGAC 57 32120394 32120816 CAGTACGTCATCCTTTGCA 58 NA Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342,ENSRNOT00000025266 3 2 2 101 7 11947793 11950750 TTCGCCTAGGAAAGAACCT 58 11947629 11947647 TGTAGAAGCGGTACTCCAG 59 NA Rattus norvegicus 81 Mrpl51 ENSRNOG00000019165 ENSRNOT00000025970 1 1 1 95 4 157706595 157706613 AGTAATGGCAGGGAGTGTC 59 157706672 157706778 AATAGTGGAACGCCCAGAG 60 NA InUTR Rattus norvegicus 81 LOC100362054 ENSRNOG00000031178 ENSRNOT00000045266 1 1 1 86 1 67341085 67341103 AAGTGGAAATCCTGTGGCA 60 67341152 67350520 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 Cdc5l ENSRNOG00000019975 ENSRNOT00000027264 3 1 1 80 9 17963578 17963598 CCTTCAAACTAGTGGTGTCTC 58 17963639 17964539 TCAGCATCTGAAATCTGAGG 57 NA Rattus norvegicus 81 Ndufs8 ENSRNOG00000017446 ENSRNOT00000023526 2 1 1 93 1 219143048 219143506 CCGCTACGTACAAGTATGTG 59 219142974 219142992 GTCCACATCAGAATCCGAG 58 NA Rattus norvegicus 81 Try10 ENSRNOG00000050119 ENSRNOT00000048049 1 1 1 89 4 70656286 70656736 CTTCGGTGTCAATGAACCA 58 70656215 70656233 ATCTTTCCAGGGTAGGAGG 58 NA Rattus norvegicus 81 Krit1 ENSRNOG00000007937 ENSRNOT00000032505 3 1 1 80 4 27448506 27448954 CCATGAGTACAAGAACCTTAGC 59 27448447 27448467 CAGTTCTGTAGAAACATGCGT 59 NA Rattus norvegicus 81 Olr1513 ENSRNOG00000034227 ENSRNOT00000043016 1 1 1 60 10 61033267 61033285 ACATTCGCCTTCATAACCC 58 61033308 61033327 AAGATGTCAACAAGGGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hba2 ENSRNOG00000047321 ENSRNOT00000048977 1 1 1 80 10 15589569 15589774 CCTGTCAACTTCAAGTTCCTG 59 15589509 15589527 CATGGCAGGTGTGAAATCC 59 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 1 1 3 60 1 82833517 82833535 GACCATTGAATCTGCACCT 58 82832437 82833495 ACCTATATCTACGAGCAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000084446 1 1 2 94 9 91776727 91776745 CAGTCATCTTCCATGAGCC 58 91668214 91776669 CAGATACGTGACCTTGCAG 58 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 1 2 2 80 5 151454915 151454934 ACACCATAGAAGAGGCAGAG 59 151453367 151454797 AATCAGGCTCTTGGGTCTC 59 NA Rattus norvegicus 81 Lactb2 ENSRNOG00000007829 ENSRNOT00000010369 3 1 1 81 5 4985895 4988524 CAGTAATGATGCCACTTATTGC 58 4988566 4988584 TTGCTGTTCTCCACTTCCT 59 NA Rattus norvegicus 81 Zbed3 ENSRNOG00000028941 ENSRNOT00000040983 3 1 1 63 2 25050481 25050499 CATCATACTCGGAGGCCTG 60 25050526 25050544 ATCATTCTGTGCCTAGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 2 2 2 122 7 117777670 117777880 GTTTGCAGGAAGCATACAC 57 117777965 117777984 AATACAAGTTCTGGCTACCG 58 NA Rattus norvegicus 81 Hrsp12 ENSRNOG00000005437 ENSRNOT00000007430 1 1 1 80 7 73259412 73260202 CTGTGACTTCACTAATGTGGT 58 73259352 73259373 TTGTAGATCTCATTGACAGTGC 59 NA Rattus norvegicus 81 Adm2 ENSRNOG00000029830 ENSRNOT00000044854 2 1 1 90 7 130297297 130297897 GACTGAGACCCAGAGAACC 59 130297951 130297969 GGAGGCTTCCAGACTACAG 59 NA Rattus norvegicus 81 AABR07065438.1 ENSRNOG00000031889 ENSRNOT00000050204 2 1 1 60 6 128738591 128738612 TTCCCGATCTGCTATGTATTCC 60 128738632 128738651 CTTGGCAGCAGAGTATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 2 2 2 80 10 25906504 25906607 CTAAGGCAAAGCCTTCTGTG 59 25906443 25906467 CTTCTGTTAACTCCACATACTTCAG 60 NA Rattus norvegicus 81 Ibsp ENSRNOG00000002158 ENSRNOT00000002938 3 1 1 83 14 6802640 6803211 CTACCCAAGAAGGCTGGAG 60 6802575 6802594 TTCCTCCTCTTCCTCTTCCT 59 NA Rattus norvegicus 81 RGD1559848 ENSRNOG00000027798 ENSRNOT00000021014 2 1 1 60 6 103717913 103717931 AAAGACCAAGAGGAAGGCA 59 103717871 103717891 TATAACCAAGTCTGCCAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 3 2 2 80 9 76646235 76666316 CCACTCTGTGGGTAAACCT 59 76646173 76646191 TCCTTGTGTTCCTCCAGTG 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341,ENSRNOT00000081744 2 2 2 80 3 35181018 35181036 TTGCTGTTCTCCTTCAGTC 57 35181078 35190516 TTCTTGATGGTCTTTGCTCTC 58 NA Rattus norvegicus 81 Cacna1f ENSRNOG00000010348 ENSRNOT00000066489 1 1 1 80 X 15737252 15737271 CATTTACGCCATCATCGGAC 60 15736592 15737210 GCCTCCATATCAGATCCCAG 60 NA Rattus norvegicus 81 Sv2c ENSRNOG00000018094 ENSRNOT00000024459 1 1 1 80 2 26525378 26525851 TAACGATGCTAGGTGGCTC 59 26525316 26525334 TCATCATGGATTCGCTGGT 59 NA Rattus norvegicus 81 Atxn2 ENSRNOG00000001256 ENSRNOT00000001691 2 1 1 80 12 40278679 40278697 TCAGCCTGGTTTAGTGTCG 60 40275490 40278638 AATTTGGGACATGCATACATGG 60 NA Rattus norvegicus 81 Plgrkt ENSRNOG00000015932 ENSRNOT00000021544 2 1 1 81 1 247504943 247504961 CTGGTCTCGGGAATTCCTC 60 247504306 247504898 TCGCTTTATTGCTCCAGCT 60 NA Rattus norvegicus 81 Nab2 ENSRNOG00000008415 ENSRNOT00000057745 1 1 1 80 7 70967257 70967275 TCTTCCTTGAAGGGATCCA 58 70966747 70966852 TTCTCCAACCTCTTGTTTCAG 58 NA Rattus norvegicus 81 Ankrd66 ENSRNOG00000046426 ENSRNOT00000075670 1 1 1 82 9 20004376 20004395 TGTGACCCAAACTACAAGGA 59 20004440 20008471 ATCACCTCCATTTGCCCTC 60 NA Rattus norvegicus 81 Vat1 ENSRNOG00000020684 ENSRNOT00000028084 3 1 1 84 10 89368742 89370590 TTGTCACTTACGGAATGGC 58 89368676 89368694 CTGAACTGATTCCACCAGG 58 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814,ENSRNOT00000018137 2 2 2 80 1 234395394 234395416 CCCAACTTGTTTACCTATAGCTC 59 234395455 234410950 TGCAATTCGATCGATCTCAG 58 NA Rattus norvegicus 81 Fgf18 ENSRNOG00000048389 ENSRNOT00000072297 1 1 1 87 10 18053966 18053984 AGTCAAGTCCGGATCAAGG 59 18047363 18053915 TAGTACCATCAGGCTTCCC 58 NA Rattus norvegicus 81 Fgf18 ENSRNOG00000048389 ENSRNOT00000072297 2 1 1 88 10 18053966 18053984 AGTCAAGTCCGGATCAAGG 59 18047362 18053915 CTAGTACCATCAGGCTTCCC 59 NA Rattus norvegicus 81 Ddx10 ENSRNOG00000012500 ENSRNOT00000017683 2 1 1 80 8 57792331 57795144 GAATATGCACTGTCTCTTGGTC 59 57792272 57792292 TTCTTTGTTGGGCTGTTTCTC 59 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000079861 1 1 2 92 13 70175094 70175112 GAACAAGTTCGTGGACGAG 59 70176632 70177311 GTCATGTTTCCCACACGAC 59 NA Rattus norvegicus 81 Krt222 ENSRNOG00000010839 ENSRNOT00000014414 3 1 1 80 10 87153826 87153844 GCAAACTATGAGCAGCTCC 59 87149651 87153784 GGTTAAATCTTCCTCCAGCTG 59 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437,ENSRNOT00000032792 2 2 2 80 8 94466829 94473237 ATCTACTGGCTGGATTTGGG 60 94466768 94466788 GTTGCAGCAGGTTATTCTGAG 60 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000014871,ENSRNOT00000087803 2 2 2 97 2 118987871 118987975 ACACGACTTGTGCTTTGTG 59 118987792 118987810 GTCAGGACTCAGTGAGAGG 59 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126,ENSRNOT00000077125 1 2 2 80 1 175200555 175202134 GAGACTGAGAAGACTCTTCCC 59 175200495 175200514 ACCCAGTTCATCAGTGAGAC 60 NA Rattus norvegicus 81 Smgc ENSRNOG00000037025 ENSRNOT00000042254 2 1 1 80 7 133076574 133077021 TCTGAGTGGTTCAGGTGAC 59 133077063 133077083 CCATCATCTCCTGAATCTGTG 58 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 3 1 1 92 11 28973573 28973591 CTCCTACTATGGCTGTGGC 60 28973475 28973518 CCATAACCACAGCCATAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Cyp19a1 ENSRNOG00000000196 ENSRNOT00000000212 2 1 1 80 8 58745826 58747498 TGAGAAGAACGTTCCCTACAG 60 58745766 58745784 ACCATGGCGATGTACTTCC 60 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 2 2 2 80 11 27237363 27237382 AAACAGCACTGCCAAATAGC 60 27237424 27250681 GAGCTCCTTCTTCCTTTCCT 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000043476,ENSRNOT00000067931 1 2 2 80 4 145765617 145771139 CTATGTTGCTGTCAGGAACTC 59 145765557 145765576 CAGTTTGAGAGTTGACACCC 59 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000006764,ENSRNOT00000032941 2 2 2 80 10 92218712 92222964 TACAACACGACAAACAATGG 57 92223005 92223025 CTGGCACTCAGAATAATTCAC 57 NA Rattus norvegicus 81 Olr1196 ENSRNOG00000048325 ENSRNOT00000044652 3 1 1 60 8 40259423 40259444 GTCTATGTGATGGGTTTCTCTG 59 40259462 40259483 AGGTCAGATTCATTAGGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifa3 ENSRNOG00000013778 ENSRNOT00000018512 1 1 1 80 3 149612745 149614458 TTCAAACTGCCCTTCAATTCG 60 149614500 149614518 ATCTTTCTCCAGCCAGGAC 59 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 2 2 2 80 2 122790958 122790977 TAGAACGAGACTTTGGTGGA 58 122791020 122792513 GGACTTCACATGTGTTGGA 58 NA Rattus norvegicus 81 Dcdc2b ENSRNOG00000048876 ENSRNOT00000071940 3 1 1 80 5 147812839 147813257 ATTTGCATCAGGAGTTAAGGG 58 147812779 147812798 TCCTCATCTACTTCCTGAGC 58 NA Rattus norvegicus 81 Sox17 ENSRNOG00000027357 ENSRNOT00000033116 2 1 1 104 5 14893660 14893678 AATGCCTTTATGGTGTGGG 58 14893746 14894201 CTTCCAGGATTTGCCTAGC 58 NA Rattus norvegicus 81 Tmem38b ENSRNOG00000028063 ENSRNOT00000034570 2 1 1 81 5 70665513 70668813 GAAGATGTCCTTCCCTTGC 58 70668858 70668876 TGATATTGCCAGATGCCTG 58 NA Rattus norvegicus 81 Psmb6 ENSRNOG00000019551 ENSRNOT00000026507 3 1 1 80 10 57132600 57132620 GCTACAGAGAAGATCTGATGG 58 57132662 57133252 TGGGAACAGAGTACACCTG 59 NA Rattus norvegicus 81 AABR07064538.1 ENSRNOG00000049817 ENSRNOT00000072657 2 1 1 60 6 84293409 84293428 ACACGACAGATGATCCAGAC 60 84293451 84293469 TCATTGGAGAGGGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsbn1 ENSRNOG00000019671 ENSRNOT00000026631 3 1 1 80 2 206407049 206439492 TTCATACTCAGGTCAACAGGAC 60 206439530 206439551 CTGCTCCAACAAGACTTATCTG 59 NA Rattus norvegicus 81 Plekhm1 ENSRNOG00000028521 ENSRNOT00000037147 3 1 1 81 10 91486235 91486254 GGAAGAAGCACACTCATCAG 59 91484602 91486194 ATAATGTGTTTGTGGGTGACAG 59 NA Rattus norvegicus 81 Triml1 ENSRNOG00000014502 ENSRNOT00000019474 2 1 1 80 16 52174116 52174134 CATCACGGAACTGAGTCTG 58 52174173 52176694 GGATCTAGAGTTATATCTGTGCTG 58 NA Rattus norvegicus 81 Ptgfr ENSRNOG00000046468 ENSRNOT00000071195 3 1 1 110 2 257007894 257036264 GGAGTCCCTTTCTGGTGAC 60 257007802 257007821 ATATCTGGTTCCAGGTTGCC 60 NA Rattus norvegicus 81 LOC683849 ENSRNOG00000050493 ENSRNOT00000043527 3 1 1 80 4 70758558 70758934 GCTTTGGTGTCAATGAACCA 59 70758977 70758995 GGTAGGAGGCTTCACAGTC 60 NA Rattus norvegicus 81 Xrcc5 ENSRNOG00000016105 ENSRNOT00000021656 1 1 1 80 9 79664287 79664305 CAAGTTCTCAACAAGCCGA 58 79665947 79667137 ACTTCTTTCCTATGGTTTCACG 59 NA Rattus norvegicus 81 B4galt2 ENSRNOG00000019609 ENSRNOT00000026591 2 1 1 81 5 136711867 136714947 CTATGTCATCAACCAGCATGG 59 136711806 136711825 CTCTTTCAGTGCCTCTAGGA 59 NA Rattus norvegicus 81 Ndufaf5 ENSRNOG00000004784 ENSRNOT00000006412 3 1 1 80 3 133232635 133232654 AGAGGAAGCAGAAGAATTGG 58 133232697 133233999 TCCGACTTCCAATCTCCTC 59 NA Rattus norvegicus 81 Cpne8 ENSRNOG00000026128 ENSRNOT00000039857 2 1 1 80 7 131635739 131635759 TACTTTGTGCTCCTCATTGTG 59 131634256 131635698 CTTGGAGGCGTTTACTATGG 59 NA Rattus norvegicus 81 Mia ENSRNOG00000001499 ENSRNOT00000002050 1 1 1 96 1 83993038 83993142 GTGTAGCCATCCTATCTCCA 58 83992961 83992979 GACATATACCACTTGGCCC 58 NA Rattus norvegicus 81 Mia ENSRNOG00000001499 ENSRNOT00000002050 3 1 1 97 1 83993038 83993142 GTGTAGCCATCCTATCTCCA 58 83992960 83992979 AGACATATACCACTTGGCCC 59 NA Rattus norvegicus 81 Smad9 ENSRNOG00000000091 ENSRNOT00000000102 2 1 1 80 2 144194413 144197195 TTATCAACACTCAGACTTCCG 58 144197236 144197255 TTGTTCAGTTCGTAGTAGGC 58 NA Rattus norvegicus 81 Tpcn1 ENSRNOG00000059344 ENSRNOT00000083890 1 1 1 80 12 41546348 41546567 CACAGCCAACTTTCCAGAC 59 41546607 41546629 GAGAGGTACACGATAAAGAAGAC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 3 3 3 80 3 22884845 22887245 TACTCTGAGAAGCTTCGGG 59 22887287 22887307 GTGCACATACTCAATGTCAGG 59 NA Rattus norvegicus 81 Ddx47 ENSRNOG00000007838 ENSRNOT00000011096 2 1 1 80 4 168781863 168782626 AGATGAGTCAGAGCAAGCG 60 168782670 168782688 CCACATCAGTCGCTAGGAG 60 NA Rattus norvegicus 81 Asmtl ENSRNOG00000028166 ENSRNOT00000036606 3 1 1 135 12 18533989 18534086 ATGTTAACCAGGCTGAACG 58 18534288 18534306 GCTTCGAGAATGTCACCAG 59 NA Rattus norvegicus 81 Duoxa2 ENSRNOG00000017805 ENSRNOT00000024201 2 1 1 81 3 114238324 114238342 TACCTCCCGAGTTCAAGTC 58 114238387 114238887 CTGCATTGGTGTTCCTCTG 59 NA Rattus norvegicus 81 LOC100359615 ENSRNOG00000049398 ENSRNOT00000072707 2 1 1 60 6 26317983 26318001 GTCACTGAGCATGTGTCTG 59 26317941 26317960 CTGATTTCATCAAGGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prok1 ENSRNOG00000018201 ENSRNOT00000024519 2 1 1 129 2 209990856 209990874 AACGAGATGTCCAGTGTGG 60 209988101 209990764 AAGAAAGGGATCTTGTGGCT 59 NA Rattus norvegicus 81 LOC684299 ENSRNOG00000039663 ENSRNOT00000060827 2 1 1 81 9 23559742 23561851 GAAGGAAGGGTTCTGACAC 58 23559679 23559697 TGTCCAAGTCAGACTTGTG 57 NA Rattus norvegicus 81 Cntnap5a ENSRNOG00000029556 ENSRNOT00000046060 3 1 1 80 13 14697776 14771096 GTACTGCAATGTTACTGAGGAC 59 14697717 14697735 TTGGAACCCTGTACCTGAG 59 NA Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 3 2 2 80 1 126963348 126964818 ACAACAGAATTTGCCGTATAGG 59 126964856 126964877 GACTGTTGTTGGTGAGAATGAG 60 NA Rattus norvegicus 81 Sh2d1b2 ENSRNOG00000038432 ENSRNOT00000058547 3 1 1 91 13 88572824 88575398 TTATGGAGGCTAAGCCCAG 59 88575453 88575471 CACCATTCCTTGACCTGGT 60 NA Rattus norvegicus 81 Tnrc6c ENSRNOG00000022395 ENSRNOT00000040629 3 1 1 80 10 106745286 106745305 TTAACCTCGCCAATTAACCC 58 106745346 106747406 TTGTAAACGTTGGTATGCCAG 59 NA Rattus norvegicus 81 Pla2g1b ENSRNOG00000001153 ENSRNOT00000001525 3 1 1 84 12 46882289 46883191 GACGACTTAGACAGGTGCT 59 46882223 46882243 TGTCGATGAGGAATTTACAGC 59 NA Rattus norvegicus 81 Zfp275 ENSRNOG00000061073 ENSRNOT00000079860 2 1 1 80 X 157463533 157464576 TGACCTCCATTGGAGTTCC 59 157463471 157463494 GATCTGATACCAACAGAAGTTGTC 60 NA Rattus norvegicus 81 Szt2 ENSRNOG00000028659 ENSRNOT00000039235 1 1 1 80 5 137204546 137204654 GGACAATTCTCAGGCTCAG 58 137204484 137204505 AGTTGTACTATGCTGATGTTCC 58 NA Rattus norvegicus 81 Szt2 ENSRNOG00000028659 ENSRNOT00000039235 3 1 1 80 5 137217425 137217444 CAATCCCTAAGGATCAAGCA 57 137217151 137217382 CAGGAATGCCTACACTCTG 58 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 1 2 2 81 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764993 93766520 TTCACTGCACTTTCCACCA 60 NA Rattus norvegicus 81 Plekhb2 ENSRNOG00000014162 ENSRNOT00000019419 2 1 1 80 9 41372578 41372597 AACTCAAGTTGTCTATGCCG 58 41372639 41378475 TGTTGTCCATAAACTCCTGC 58 NA Rattus norvegicus 81 RGD1565862 ENSRNOG00000015005 ENSRNOT00000042670 1 1 1 80 X 18081609 18081816 GAGAGCTGGTCAGAAGAGG 59 18081547 18081566 TCATGAGAAATTCTGCAGCC 59 NA Rattus norvegicus 81 Rnf152 ENSRNOG00000014859 ENSRNOT00000019921 2 1 1 194 13 25191129 25260878 CAGATTCAGAAATTAGCACGTG 58 25190956 25190976 CATATCTGACATTCCAGCAGG 59 NA InUTR Rattus norvegicus 81 LOC100911572 ENSRNOG00000046521 ENSRNOT00000073993 1 1 1 80 9 90871512 90872069 GACAAGACCTTGGTACTCTG 58 90872111 90872130 ACACGTTATCGACGTTACAG 58 NA Rattus norvegicus 81 Glyatl3 ENSRNOG00000050990 ENSRNOT00000074110 1 1 1 80 9 23379265 23380412 TGAATCACTCAAGGTGTATGG 58 23380451 23380472 CATGAATCCAATACCACTTCCT 58 NA Rattus norvegicus 81 Fam115c ENSRNOG00000050703 ENSRNOT00000071511 2 1 1 80 4 72054824 72055679 TGTTCAGATATCAAATGGCTGG 59 72054765 72054786 AAACTGACTAGTTCTTGCACAG 59 NA Rattus norvegicus 81 Junb ENSRNOG00000042838 ENSRNOT00000067780 3 1 1 60 19 26094440 26094459 TATCACGACGACTCATACGC 60 26094399 26094417 GAAGAGAAAGACTGCCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564184 ENSRNOG00000046289 ENSRNOT00000048829 1 1 1 60 3 17009125 17009145 CAGGTCTTCGTATTTCTGCTG 59 17009360 17009378 GGGTCATCACAGTATTCCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 3 2 2 82 12 46989769 46989787 AGTTTCTCAAAGGAGACGG 57 46988298 46989724 CTTGATTGCTTTCTGGACAC 57 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 2 2 2 82 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890242 10890260 GGAGCTGTAGTTCCTGTGG 60 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 3 2 2 80 9 100305607 100305627 GTGTCCTCAAAGATCTTCTGG 59 100302243 100305565 CAGCATTCAGTGAACCTGG 59 NA Rattus norvegicus 81 Aldh2 ENSRNOG00000001344 ENSRNOT00000001816 1 1 1 80 12 40486434 40487944 AAATGTCTCCGCTATTATGCTG 59 40487985 40488003 GTAGCTGAAGAAGTCGCCA 60 NA Rattus norvegicus 81 Tmem50b ENSRNOG00000002028 ENSRNOT00000002775 1 1 1 80 11 31730216 31733115 AGGAATCTTGTTCTTTACAGGC 59 31730157 31730175 GCGTGGTTTAGTTGCTCAG 60 NA Rattus norvegicus 81 RGD1563746 ENSRNOG00000021953 ENSRNOT00000032856 2 1 1 80 10 90623844 90628417 CTACAAGTCGCAGAATGAAGAC 60 90628458 90628476 GAGCTTGCATACTCTGCTG 59 NA Rattus norvegicus 81 Prkg2 ENSRNOG00000002361 ENSRNOT00000003237 1 1 1 80 14 12302822 12311079 GACATTAAGAAACACAGGTGG 57 12311121 12311139 TCTTCGTAAAGGTGAGGGA 58 NA Rattus norvegicus 81 Oraov1 ENSRNOG00000020903 ENSRNOT00000028374 2 1 1 80 1 218078580 218080401 CTGGTGAGAAAGAAAGCAGG 59 218080441 218080462 TGGGATCATCATAGGGAAAGTC 60 NA Rattus norvegicus 81 Cnep1r1 ENSRNOG00000015534 ENSRNOT00000020816 1 1 1 80 19 19904119 19904142 GATTAGCTGTATAACGCTGATAGG 59 19903455 19904082 CGAGCAGCTATAATTGATGGT 58 NA Rattus norvegicus 81 LOC680913 ENSRNOG00000024182 ENSRNOT00000032408 1 1 1 80 19 20503837 20504424 ACCTTCAACAAGAGCTTCCT 59 20503776 20503795 CTTCGTGTCAGTTTCACTCC 59 NA Rattus norvegicus 81 LOC680913 ENSRNOG00000024182 ENSRNOT00000032408 2 1 1 80 19 20490410 20503731 GAAGAAGTCTGGTGCATCTG 59 20487122 20487142 GTTTCTAGGGCTATGACATCC 58 NA Rattus norvegicus 81 Tmem192 ENSRNOG00000030199 ENSRNOT00000042181 2 1 1 80 16 26633345 26633364 CATGCTCACTTTAGACCCAG 58 26628821 26633303 AAACACGACGTGTATAAGCA 58 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000061251 ENSRNOT00000085565 1 1 1 60 2 195278753 195278772 CATCCTTCGAGATTTCCTCC 58 195278712 195278730 GGTAAGCTTGTCTTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 2 2 2 80 13 85476281 85476300 GATGAAATCCATGTTTGCGA 57 85476340 85481541 ACCACTCTACCATCAAATATGG 58 NA Rattus norvegicus 81 Wrb ENSRNOG00000001629 ENSRNOT00000002222 2 1 1 80 11 36497669 36505289 ACCTTGTCCTCGTTTATTTCC 58 36505331 36505349 CATGCTCTGGATCTCTGCT 59 NA Rattus norvegicus 81 AABR07043748.1 ENSRNOG00000046621 ENSRNOT00000072666 2 1 1 60 19 38343930 38343950 AAGTTGCGAAAGGTGAAAGAG 60 38343890 38343908 GCTTACTCTGCTCCTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rev1 ENSRNOG00000018623 ENSRNOT00000067197 3 1 1 80 9 44741217 44741236 GCTGTGTAATGCATGTTGAC 58 44739703 44741176 CTGGCTTTCCTTTGAGATCTG 59 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 3 2 2 80 14 82777267 82786027 ATTGGACTAGGTCGTGTGG 59 82786068 82786089 GTATGGGTCATAGAAGAGGACG 60 NA Rattus norvegicus 81 Tgif1 ENSRNOG00000015906 ENSRNOT00000021534 1 1 1 80 9 119182127 119183012 TGTCCACACTACAGGTCTG 59 119182065 119182084 CTTTGCCATCCTTTCTCAGC 60 NA Rattus norvegicus 81 Oas1d ENSRNOG00000048485 ENSRNOT00000057258 1 1 1 80 12 42372521 42372540 CAACACTTCCTGAAGCATCC 59 42369441 42372481 CTCCTTACACAGTTGATACCAG 58 NA Rattus norvegicus 81 L3mbtl4 ENSRNOG00000025273 ENSRNOT00000029210 1 1 1 80 9 116854619 116854641 AGGAAGAGAAGATACTGACTTGG 59 116941748 116966341 GAAGCTGAGTACTCTAGTCTCC 59 NA Rattus norvegicus 81 Zfp952 ENSRNOG00000029416 ENSRNOT00000043826 3 1 1 81 7 15280893 15280911 TTCACAAACATGAGCGAGC 59 15283075 15283093 TAAGTGCAGTCCCTGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fbxo39 ENSRNOG00000014953 ENSRNOT00000020071 1 1 1 80 10 58877483 58877502 CTGGACGTTAAGTTTGTGGA 58 58877544 58878134 AATTCTCACCTTCAGTGTGC 59 NA Rattus norvegicus 81 Rdm1 ENSRNOG00000020751 ENSRNOT00000028174 2 1 1 88 10 89540386 89540404 TTTCGTAGTTCCCACCCAG 59 89540454 89540713 ACAGAGAATGACTTAAGGCCT 59 NA Rattus norvegicus 81 Nifk ENSRNOG00000025701 ENSRNOT00000061619 1 1 1 83 13 34269292 34271720 CAGAAGTAAGCGGACTGGA 59 34271765 34271785 GTTTCTGCAACTATCTTGGCA 59 NA Rattus norvegicus 81 P4hb ENSRNOG00000036689 ENSRNOT00000054958 2 1 1 80 10 109740151 109740171 ACCAAGGAGAAGCTGTTAGAC 60 109740010 109740110 CTTTGGAGCTGTCTGTTCAG 59 NA Rattus norvegicus 81 B3gat2 ENSRNOG00000046852 ENSRNOT00000075592 2 1 1 80 9 30040482 30040500 ATGGCAAAGTTGTTGGCTG 60 30040544 30067968 GACTCACAGCAAATCCAGC 59 NA Rattus norvegicus 81 Neto2 ENSRNOG00000016245 ENSRNOT00000021739 1 1 1 80 19 22461202 22461303 TTAAATCCCATTCCAGATTGCC 59 22461343 22461362 TTCCTCCTGTTCTACTTGGC 60 NA Rattus norvegicus 81 Isl2 ENSRNOG00000015336 ENSRNOT00000021074 1 1 1 109 8 60121651 60121969 AACAGCTGGTCTCCTTCTC 59 60122040 60122060 ACTAGGTACCATACTGTTGGG 59 NA Rattus norvegicus 81 Il10ra ENSRNOG00000016308 ENSRNOT00000021926 1 1 1 80 8 49568924 49568944 GGAATCCCGAATTAACAAGGC 60 49564690 49568884 TTGGTCACGGTGAAATAATGC 60 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000091710,ENSRNOT00000006849 3 2 2 60 13 90387584 90387603 GCTTCTATAATGTCGGCCAC 59 90386724 90386743 TACTTCTCCAGGATCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Krt14 ENSRNOG00000003899 ENSRNOT00000083895 3 1 1 80 10 88120495 88120513 GGACAATGCCAATGTCCTC 59 88119996 88120452 TGCTCTGTCTCAAACTTGGT 60 NA Rattus norvegicus 81 Tm4sf4 ENSRNOG00000016437 ENSRNOT00000022105 1 1 1 80 2 147532531 147533252 GAGTCTTGATGATCTTCCCTG 58 147533294 147533312 AGCTCTCATTACCACAGCA 59 NA Rattus norvegicus 81 Exog ENSRNOG00000014801 ENSRNOT00000020174 2 1 1 84 8 128137538 128139754 CTGGAATAGGATAGAAATGTACTGC 59 128139795 128139814 AGGTAAGGTTAAAGGTCCCG 59 NA Rattus norvegicus 81 LOC100910882 ENSRNOG00000019848 ENSRNOT00000026964 2 1 1 80 3 151708246 151711044 TAGGAAAGGTTCGAGATGTGAG 60 151708187 151708206 CAACAAACTCCACATAGGCG 60 NA Rattus norvegicus 81 Pdxdc1 ENSRNOG00000002407 ENSRNOT00000003284 2 1 1 80 10 3301085 3301104 GCATCCTCCAGTTAGTTCAG 58 3299062 3301044 CTCCAATATTCTGGATTCGGG 58 NA Rattus norvegicus 81 Zfp961 ENSRNOG00000049856 ENSRNOT00000074514 3 1 1 80 16 19542664 19544368 GAGAAATCTGAGAGTCCAAGTG 59 19542605 19542624 GACTGGACAACTGTTTCTGC 60 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043,ENSRNOT00000032299 2 2 2 80 5 73926627 73927442 TCATACCATCAGCTTTGGCA 60 73926566 73926585 CTAGAACTGCAGGTACTGCT 59 NA Rattus norvegicus 81 Wfdc8 ENSRNOG00000014771 ENSRNOT00000055160 2 1 1 84 3 161064489 161064507 ACAGACTTCAACTGTGAGG 57 161062136 161064441 GGCAGGGTTCTTCATAAGG 58 NA Rattus norvegicus 81 Ticrr ENSRNOG00000015520 ENSRNOT00000031783 2 1 1 80 1 141423788 141423809 TTGGAATGTCTACAGCATAAGC 59 141423845 141424523 CTTAGTCAGCAGTTTATAACCCTG 59 NA Rattus norvegicus 81 Alppl2 ENSRNOG00000042889 ENSRNOT00000033487 1 1 1 80 9 94180139 94180610 CTATCTCTTTGTGGAAGGACTG 58 94180649 94180669 CCGTTGCCATATAGGATTGAG 59 NA Rattus norvegicus 81 Wfdc16 ENSRNOG00000036777 ENSRNOT00000042234 1 1 1 60 3 161099010 161099028 CCTTCTGTGGCAATGTCTG 59 161098582 161098600 TTACGGTTTGACTTTGCGC 60 NA DesignNoJunction Rattus norvegicus 81 Wfdc16 ENSRNOG00000036777 ENSRNOT00000042234 3 1 1 87 3 161099037 161099055 GTGATGACGAGTTTCGCTG 59 161098582 161098600 TTACGGTTTGACTTTGCGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1351 ENSRNOG00000032545 ENSRNOT00000049910 2 1 1 60 9 99763970 99763990 TCTTCCTCAAGAATCTGTCCT 58 99764009 99764030 GCATTAGGTACAATCACAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdrbs2 ENSRNOG00000012284 ENSRNOT00000016578 2 1 1 80 9 39796681 39860338 ACAAGGCAAAGGAAGAAGAG 58 39796620 39796641 CAATTAATACGTGCAGTTCGTC 59 NA Rattus norvegicus 81 Dmxl2 ENSRNOG00000009170 ENSRNOT00000066197 3 1 1 80 8 58984221 58986972 CTTCAGCAGGTCATCTGAG 58 58984159 58984178 TGTCAGAGCAAGTTGTAACC 58 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230,ENSRNOT00000084012 2 2 2 80 7 70368278 70368296 GAGTGGGAAGTCATCCCTC 59 70368339 70368505 TTGTACTGCTCACTCTCAGG 59 NA Rattus norvegicus 81 F2rl2 ENSRNOG00000018054 ENSRNOT00000024292 3 1 1 69 2 26240456 26240476 AAAGTCCTTATCTTGGTTGGG 58 26240507 26244169 GTTTCATGCCACTTTGGCA 60 NA DesignRelaxed Rattus norvegicus 81 Tex12 ENSRNOG00000049470 ENSRNOT00000013014 3 1 1 84 8 54993741 54993847 ATTTGAGCGATATGAGCAAGG 59 54992962 54992980 GATGCATCTACTGCTGCTC 59 NA Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000086962 3 1 2 83 5 62141319 62151147 AAAGGCTCAAGGTTTCTGC 59 62141254 62141276 CCTCTTCATCAAGGAGTAATCTG 59 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000064611,ENSRNOT00000022074 3 2 2 81 8 49715460 49715767 TCGAGTATGACTATGAAACCGT 59 49715809 49715827 AGGAGAATGAGGAGTCCCA 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000012017 3 1 2 169 7 26646836 26750203 TACAATCCCATCCAGCTGG 59 26646685 26646704 TAGATGAGTTCGTGGTCCTC 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 1 1 2 166 7 26646838 26690121 TTAGTCTTGCGTTCGAGCT 60 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07067274.1 ENSRNOG00000038721 ENSRNOT00000051890 3 1 1 60 9 37593326 37593345 TTATCCACTGGTGATGTTGC 58 37593414 37593433 CATACTTCTCCTTCAGCGTG 59 NA DesignNoJunction Rattus norvegicus 81 Plekhg1 ENSRNOG00000016011 ENSRNOT00000021471 3 1 1 80 1 40501658 40501676 CGATCCTAAGGGAGAGGTG 59 40501720 40503548 GATCGAGAGGAAGGCTCTG 59 NA Rattus norvegicus 81 Ccdc160 ENSRNOG00000046484 ENSRNOT00000071222 2 1 1 60 X 140176139 140176157 CAATGTTGCCTTCAGGGAC 59 140176179 140176199 TCTGTGAGAACTTTCCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000004347 3 1 2 83 13 89544802 89565624 ATGAGCGAGCTTAACACCA 59 89543632 89543651 CTTAATGCTGCCAGGTTTCC 60 NA InUTR Rattus norvegicus 81 Casq1 ENSRNOG00000006930 ENSRNOT00000009344 1 1 1 80 13 90598613 90599261 AGTTTCTGCTCGATGTCCT 59 90598551 90598570 CCTCGATGTTCTCAAATGCC 59 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000086090,ENSRNOT00000089198 1 2 3 81 14 83343375 83343393 CTCTACTACCTCCTGCCCT 60 83343438 83344711 TATACAGGGACACCCTGCT 60 NA Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000086090,ENSRNOT00000089198 3 2 3 83 14 83343373 83343391 TCCTCTACTACCTCCTGCC 60 83343438 83344711 TATACAGGGACACCCTGCT 60 NA Rattus norvegicus 81 Cox6a2 ENSRNOG00000019851 ENSRNOT00000026908 2 1 1 134 1 199624682 199624701 CTTAAGGTCCTCAGTCGGAG 59 199624379 199624397 CATCCAGCAGTTAAGCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000077048,ENSRNOT00000082010 1 3 6 80 10 89215903 89216734 CAGGAGGAAGCTCAGTACC 59 89215841 89215862 TACACTCTTGAGCTCATCATCC 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000076146,ENSRNOT00000082010 3 3 6 86 10 89213320 89215774 ACCTTCCATATCTGGCACAG 60 89213253 89213271 ATTCCATTCCACAGGAGCA 59 NA Rattus norvegicus 81 Cops4 ENSRNOG00000023650 ENSRNOT00000003046 2 1 1 82 14 10732678 10732696 GGCTTACATAAACCGAGCT 58 10732479 10732635 GTGCATAGCAAACCTTATAGTG 58 NA Rattus norvegicus 81 Spns2 ENSRNOG00000057040 ENSRNOT00000078272 3 1 1 80 10 59018240 59022999 ATCCCTCAGCAGTACTTCTG 59 59018179 59018199 TGCTATGGTGGAATAGCTAGC 60 NA Rattus norvegicus 81 Ccdc42 ENSRNOG00000004075 ENSRNOT00000005423 2 1 1 80 10 55176670 55176933 GTCATCTTCTGGGAATCTCG 58 55176976 55176994 CATCTTAATGGTGCCAAGC 57 NA Rattus norvegicus 81 Stk3 ENSRNOG00000011278 ENSRNOT00000065722 1 1 1 80 7 73848839 73848859 GCTGAGTGAAGACAGTTTGAC 60 73846759 73848799 CTTCCATAAGACCCTTCTCCA 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000057673,ENSRNOT00000050005 3 3 3 80 14 83583310 83583329 AAGTGATGGTCATGAAGGAG 57 83581728 83583267 TTCGCATCACTTTCACCTC 58 NA Rattus norvegicus 81 Hsd17b13 ENSRNOG00000002212 ENSRNOT00000038188 3 1 1 81 14 7122513 7122532 GAAACTCTGGCCACATTGTC 60 7122576 7124558 TTGCTGGAGCAATATGGGA 59 NA Rattus norvegicus 81 Sbk2 ENSRNOG00000038625 ENSRNOT00000058956 1 1 1 80 1 72425916 72426966 GCCCAATTTGTAAATGCCTG 58 72427009 72427027 CCTTCATCACCTCCATCCT 59 NA InUTR Rattus norvegicus 81 Or51t1 ENSRNOG00000048436 ENSRNOT00000072815 3 1 1 60 1 168092970 168092988 TCTTCAGTTCTACGCCCAG 59 168093009 168093030 GGCAAGAGCAGATACATATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa2 ENSRNOG00000025581 ENSRNOT00000051834 2 1 1 81 1 277727743 277728053 CTATGCAGAGAAGCCAAGC 59 277728097 277728116 CGTTCTTCAGGATACAGGTG 58 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000021609 ENSRNOT00000029395 2 1 1 80 5 146340451 146341805 TATGCACAAGTAAGTATGCCC 58 146341845 146341865 CGACCTTAACTATTGACCCAC 59 NA InUTR Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445,ENSRNOT00000081780,ENSRNOT00000042331 1 3 3 80 12 43462101 43462120 CTCCTAAACTCCACAGTCAC 58 43460003 43462058 TCTGGCTCCTCTTAGACTG 58 NA Rattus norvegicus 81 Coa3 ENSRNOG00000020487 ENSRNOT00000027782 3 1 1 81 10 89199228 89199514 CCTGGTGTTAGCTATTTATGGT 58 89199168 89199186 TTTGGCTTCATCTTCCAGC 59 NA Rattus norvegicus 81 Cry2 ENSRNOG00000007478 ENSRNOT00000010142 2 1 1 80 3 81323436 81325613 TGTACAGAAAGGTGAAGAGGA 59 81323376 81323397 CTGTATAGAAGAATTCTCGCCA 58 NA Rattus norvegicus 81 Lonrf2 ENSRNOG00000023312 ENSRNOT00000033964 2 1 1 80 9 45481615 45481635 TAAGGAGATGCATGGAAACTG 58 45478910 45481574 AGCCATACTCTGAAATCCCT 58 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 2 2 2 80 16 61768248 61768267 CCATATTCCTCACCACAGGT 59 61768309 61769349 CCCATTCAATCAGATGTGCC 59 NA Rattus norvegicus 81 Npas2 ENSRNOG00000013408 ENSRNOT00000059571 1 1 1 80 9 46045527 46045548 CACTACTACATCACCTACCACC 60 46045589 46048032 ATCTGCGTAACTGACCACC 60 NA Rattus norvegicus 81 RGD1562310 ENSRNOG00000001123 ENSRNOT00000001485 1 1 1 92 12 43929111 43940603 GTACCTTCAAGCAGGAAGAG 58 43929038 43929056 TAAACTGCACCTTCCAAGG 58 NA Rattus norvegicus 81 Cmtm8 ENSRNOG00000011201 ENSRNOT00000015188 2 1 1 93 8 122849840 122849858 CTTCTCAGCTGCCATAGTG 58 122848850 122849783 GAAGGCAAAGAACGAGGAG 59 NA Rattus norvegicus 81 Slc4a11 ENSRNOG00000021234 ENSRNOT00000028839 3 1 1 80 3 123225036 123225054 CTCTACATTGCGCTGACCT 60 123224898 123224994 GTATGACGTTTGCTCCTTGAG 59 NA Rattus norvegicus 81 Mtfr1l ENSRNOG00000016937 ENSRNOT00000022908 3 1 1 80 5 152743535 152743925 AAGCCAATGTGACTATCCCA 59 152743474 152743496 GATTGGTCCCAATTCTTCTTACC 60 NA Rattus norvegicus 81 Strip1 ENSRNOG00000018293 ENSRNOT00000025036 1 1 1 80 2 210408662 210408681 ACAACATCTTTCTGCTCCTG 58 210407632 210408621 CGGCACTGTTATCTATTTCCA 58 NA Rattus norvegicus 81 AABR07067526.1 ENSRNOG00000060633 ENSRNOT00000080275 2 1 1 60 9 51129583 51129601 ACAATCCACAGAAACCACG 58 51129628 51129646 AGTCTCTGGGTCTCTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Ankk1 ENSRNOG00000025037 ENSRNOT00000068040 1 1 1 80 8 53753833 53754481 GCCATGCTTCCTAAATGTG 57 53753771 53753789 TCATACTCAGGATCTGCCA 58 NA Rattus norvegicus 81 Tubgcp2 ENSRNOG00000018137 ENSRNOT00000024573 1 1 1 80 1 212338821 212341817 ACGACCTCAAGATTGACCT 58 212338759 212338779 TCTCTTGCTTGGTCTCTATGG 59 NA Rattus norvegicus 81 Cd79b ENSRNOG00000011917 ENSRNOT00000015976 1 1 1 80 10 94498486 94498506 TTATCATGATCCAGACCCTCC 59 94498138 94498444 CCTTGCTGTCATCCTTGTC 59 NA Rattus norvegicus 81 Angpt4 ENSRNOG00000005008 ENSRNOT00000006786 2 1 1 80 3 147445634 147447145 CTCTCAAGGTGTTCTGTGAC 58 147447187 147447206 AATTCAAGCTTCCATCCTCC 58 NA Rattus norvegicus 81 Col3a1 ENSRNOG00000003357 ENSRNOT00000004956 1 1 1 80 9 52023476 52032521 CAATGTAGATGAATTGGGATGC 58 52032562 52032580 ATTTGACATGGTTCTGGCT 57 NA Rattus norvegicus 81 Tcn2 ENSRNOG00000004280 ENSRNOT00000005934 2 1 1 80 14 84181192 84181210 GAAGATCCTGAAGGCCCAG 60 84181020 84181150 GTCATTAGCATCTGTAGTGCC 59 NA Rattus norvegicus 81 Gak ENSRNOG00000000048 ENSRNOT00000000064 2 1 1 80 14 2116847 2120747 GGAGGAAGAGATCACGAGG 59 2120786 2120809 CCAATAGGGAAGTTAGAATACAGG 59 NA Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 2 2 2 80 1 126986546 126986566 AAGATTGAAATGTGGGACAGC 59 126986607 126986769 AGGACCATCTTCTTCCTGAG 59 NA Rattus norvegicus 81 RGD1560010 ENSRNOG00000010071 ENSRNOT00000013356 1 1 1 157 2 178390134 178390152 CCTCTTCATCGTCCCTCAG 59 178391652 178391670 TGATACTGCAGATGTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 P22k15 ENSRNOG00000030184 ENSRNOT00000050369 2 1 1 80 3 143778283 143778303 CTACTGGCCATCTTTGTACTG 59 143614986 143778243 CGCAAACATTTCAATACCTCC 58 NA Rattus norvegicus 81 Ftl1l1 ENSRNOG00000034150 ENSRNOT00000049856 1 1 1 60 X 139476041 139476060 CCACTTCTTCGGAGAATTGG 59 139476000 139476018 CAACTTGAGGAGATGCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tatdn1 ENSRNOG00000047198 ENSRNOT00000070909 3 1 1 85 7 98792757 98792779 GAGAAGAAATAGAGATCGGTGTG 59 98790589 98790611 AAAGGTCCAAGTCCAAAGC 58 NA Rattus norvegicus 81 AABR07013798.1 ENSRNOG00000030563 ENSRNOT00000052249 1 1 1 60 2 257295465 257295484 TCCATCTGTAGAAGGTGGAG 58 257295507 257295525 TCTAACAAGCCTGCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911874 ENSRNOG00000003872 ENSRNOT00000005228 2 1 1 80 9 52897699 52898638 CTCACCTAAAGATACTGAGCC 58 52897639 52897659 TCAAGTTCACGGATGTTAGAG 58 NA Rattus norvegicus 81 Dnajc14 ENSRNOG00000006844 ENSRNOT00000037332 3 1 1 80 7 3238495 3238513 TCGAAGCTACAAGATGACC 57 3238556 3240848 TTCAAACCTCCTATGCTTCC 58 NA Rattus norvegicus 81 LOC100364877 ENSRNOG00000049646 ENSRNOT00000075721 2 1 1 61 X 134389439 134389457 GACCGAAAGTGAACGTCTC 59 134389479 134389500 CCTTGTTTGATTTCTGAAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076592 1 1 3 144 1 167337330 167345221 TGGTTAAGGTCACTACTTCCAG 60 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 Gdpd3 ENSRNOG00000019685 ENSRNOT00000026688 1 1 1 80 1 198200815 198200913 AACTCATTCACAAGGTAGCCA 60 198200952 198200973 TTGAGTTCTTCTCTGAAGTCCA 59 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 2 2 2 80 2 208787620 208795909 GGCCTACTATGAGATTTGTACCT 60 208795948 208795967 TAGGCATAGGGAACTTCCTG 59 NA Rattus norvegicus 81 RGD1562036 ENSRNOG00000024788 ENSRNOT00000033929 3 1 1 82 5 148434551 148434569 AATGAGGGCCATTATGGTG 58 148433785 148434506 GAGGGTAACTCCTTTACCAC 57 NA Rattus norvegicus 81 Rplp2 ENSRNOG00000002116 ENSRNOT00000038691 3 1 1 124 1 213991628 213991646 CGTTGCCTCTTATCTGCTG 59 213991732 213992429 CACTGATGACCTTGTTGAGTC 59 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000049355 ENSRNOT00000070802 2 1 1 60 X 106523678 106523696 ACGGTCTCAAGGGAAACAG 60 106523719 106523738 GCAATCGGTATAACTTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnhd1 ENSRNOG00000051291 ENSRNOT00000081667 1 1 1 80 1 170556509 170558975 AGAGCAGAGCAAAGTACCA 59 170559016 170559037 CTTCATTGTTCTCACTTTCCAG 58 NA Rattus norvegicus 81 Aen ENSRNOG00000018421 ENSRNOT00000064438 1 1 1 89 1 140588144 140591088 AGAAGGAGATCCTTAAGCTGC 60 140591139 140591157 CAGGGTGGACGTACTTCAG 60 NA Rattus norvegicus 81 Eno3 ENSRNOG00000004078 ENSRNOT00000005612 1 1 1 80 10 57283399 57283517 CAACCAGCTTATGAGGATTGAG 59 57283558 57283576 TTGGCCTTTGGATTACGGA 59 NA Rattus norvegicus 81 Det1 ENSRNOG00000018515 ENSRNOT00000065457 1 1 1 80 1 140528842 140528860 ACAGTGAAGTCCAGTTCCC 59 140523371 140528800 TAATTGTGTCTTTGAACCGGC 60 NA Rattus norvegicus 81 Kif17 ENSRNOG00000014970 ENSRNOT00000020215 1 1 1 80 5 156663357 156663375 AGTAACTACTTCCGCTCCA 58 156663417 156665536 TGGTGAGTTGTGATAAGTGAG 58 NA Rattus norvegicus 81 Osbp2 ENSRNOG00000019645 ENSRNOT00000065501 3 1 1 80 14 83957712 83967150 TGATCAACGCCTGTAAGGA 59 83957650 83957669 CCTGCTCATAATTCAGAGCC 59 NA Rattus norvegicus 81 Dalrd3 ENSRNOG00000020159 ENSRNOT00000027318 3 1 1 81 8 117356780 117356799 GACTGTGTCTGAAGGAACTG 58 117356842 117356934 TCTTCAGTCACCAAACAGTG 58 NA Rattus norvegicus 81 Chsy1 ENSRNOG00000012698 ENSRNOT00000016939 1 1 1 80 1 127010828 127010847 CAGGAACTTTCTCTTCGTGG 59 127010890 127025470 GACCATGTTCTGTAAGCGG 59 NA Rattus norvegicus 81 RGD1308544 ENSRNOG00000047406 ENSRNOT00000071842 3 1 1 81 1 37725762 37725780 TTCAGCTACATCCCTCCAC 59 37704183 37725717 GGGAGACAATCCCTGTCTG 60 NA Rattus norvegicus 81 Magea8 ENSRNOG00000048840 ENSRNOT00000039874 3 1 1 60 X 43183811 43183829 GCATGAAGCTGGTCTTTGG 60 43183851 43183871 ACATAGGAATGGACAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1766 ENSRNOG00000037506 ENSRNOT00000050717 2 1 1 60 X 136892838 136892857 ATTGAGCCCATAATGCTGAG 58 136892797 136892815 AGGCTGGAAAGGAGATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmg1l1 ENSRNOG00000034130 ENSRNOT00000047553 2 1 1 60 X 115351463 115351482 ATCCTGGCTTATCCATTGGT 59 115351504 115351523 GCAGTGTTGTTCCACATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddb2 ENSRNOG00000014071 ENSRNOT00000018998 2 1 1 80 3 80036317 80037637 TCAAACTCTTGCAAGGTCTG 59 80036256 80036277 TCCCATATTGTCTCCTGTAACC 59 NA Rattus norvegicus 81 Vom1r55 ENSRNOG00000049810 ENSRNOT00000072551 3 1 1 60 2 168259861 168259879 TGCAACCTCACTTACAGGA 59 168259819 168259837 CCAAGAGTAGGATGCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000049136 ENSRNOT00000072964 1 1 1 138 2 115307408 115307429 TCAGCACTTGATACAACATGTG 59 115304249 115307314 CATTTGTAGATTTCTAGGTCTGGC 60 NA InUTR Rattus norvegicus 81 Klhl34 ENSRNOG00000024479 ENSRNOT00000050708 2 1 1 60 X 39955980 39956002 CCGTATCTTATTAGTTGGTGGTC 59 39955942 39955964 GACCATGATTTCCTCAGTTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sppl2c ENSRNOG00000005104 ENSRNOT00000006808 2 1 1 60 10 92247182 92248037 CGTGTGACCAACAGAAAGAC 60 92248060 92248078 GCTGAGGTTTGAAGGAAGC 59 NA DesignRelaxed Rattus norvegicus 81 Osgepl1 ENSRNOG00000004001 ENSRNOT00000005408 2 1 1 82 9 53089251 53090039 CAGTATTAGTTGTGTCTGGAGG 58 53089190 53089208 GCATTGTGTTGCATTTGCT 59 NA Rattus norvegicus 81 Ubqln2 ENSRNOG00000003099 ENSRNOT00000026214 1 1 1 60 X 18724757 18724777 ACCTACTGAAACCATAAGTCC 57 18724717 18724735 TTGCTGAATGAACTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Barx2 ENSRNOG00000008592 ENSRNOT00000011386 2 1 1 80 8 32951606 32958923 GAAGTGGAAGAAGATGGTCC 58 32951545 32951564 GGAATGGAGTTCTTCTTGGG 58 NA Rattus norvegicus 81 Armcx5 ENSRNOG00000003187 ENSRNOT00000004252 1 1 1 60 X 106254767 106254788 CCAAGCCAATACAAGAGAACTG 60 106254809 106254827 AAAGTGAGCAACCAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310553 ENSRNOG00000016447 ENSRNOT00000022601 3 1 1 109 9 49903187 49905002 CTGGAGCAGAAGAACATAGC 59 49905074 49905092 TTTGGCAAATCCCTCTGAG 58 NA Rattus norvegicus 81 Plscr3 ENSRNOG00000027914 ENSRNOT00000031640 1 1 1 80 10 56455550 56455569 CTGTTCTACGAGTCGTAGGG 59 56455609 56457391 ATTCATCCTTTGTCTTCACCTC 59 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 1 2 2 80 2 28798501 28798522 GATACCTCTGAAATCGAAGGTG 59 28794470 28798465 GAATATTATCACTGAGTCACCCAC 59 NA Rattus norvegicus 81 Olr1088 ENSRNOG00000028146 ENSRNOT00000012907 3 1 1 60 7 14117107 14117126 CCTGTGCTGAAACTAAGCTG 59 14117066 14117084 TCAGGAAGAAGATGCCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477,ENSRNOT00000014924 3 2 2 80 16 59232594 59233256 GTGTAATAGGCACAGACTGAG 58 59233296 59233316 TTAATCTGCAGAGACACAGAG 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 2 2 2 80 1 213516909 213516927 CAAGAAGTGTCTGAGGCTC 58 213516968 213517315 TTATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 3 2 2 80 1 213520407 213520425 TTGTCCCTTCCAACCTACC 59 213520469 213520984 TCACAACTGTACCCTTGGG 59 NA Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000080541 1 1 2 80 14 85311575 85312276 CCAGAAGTCTTGAGGAGTGG 60 85312319 85312337 AGATGTCGTAGACCAGCAC 59 NA Rattus norvegicus 81 Stx17 ENSRNOG00000005801 ENSRNOT00000007641 1 1 1 80 5 63912838 63921019 CCCTCCTAGTAAATTCTCAGCA 59 63921059 63921078 CCTCTTCAACATTCACAGCA 59 NA Rattus norvegicus 81 Hps6 ENSRNOG00000018433 ENSRNOT00000024898 3 1 1 60 1 265762933 265762952 ACAGACAGAGTACACCTCCT 60 265762972 265762993 CTAGGTCTTCCTCATTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag7 ENSRNOG00000004246 ENSRNOT00000005653 2 1 1 80 10 57285909 57285928 AAGAGCTAGATTCCTACCGT 58 57285746 57285868 GAGCTAGCTCCTTTAGTTTCC 58 NA Rattus norvegicus 81 Gpr61 ENSRNOG00000019738 ENSRNOT00000026750 2 1 1 60 2 210943585 210943605 TCAGCTGAGAAGAGCTATCAC 59 210940581 210943564 CTCATGAAGGCATCTTTGCT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 RGD1564836 ENSRNOG00000026969 ENSRNOT00000038940 2 1 1 60 X 33349292 33349311 GCAGAAAGTTACCACAACTC 57 33349251 33349269 CTCCTCCAGTTTCTTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnc2 ENSRNOG00000015155 ENSRNOT00000020348 1 1 1 80 3 161244678 161244788 ATGATCGCTGAGTTCAAGG 58 161244616 161244634 GGTACCCAGCTCTTTAACG 58 NA Rattus norvegicus 81 Zfp628 ENSRNOG00000038622 ENSRNOT00000029136 3 1 1 122 1 72468084 72468102 TCAGAGTACCAACCTTCGC 59 72467785 72467803 TCCACTGTAGTCTCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055937.1 ENSRNOG00000061704 ENSRNOT00000073630 2 1 1 60 7 16068032 16068053 TATTAAACCATCTGCAAGGGAG 58 16067993 16068014 AGTATACAGCAAAGCTACACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 3 2 2 82 8 32209251 32211309 CAGATGAGGATGACAGATTGGA 60 32211352 32211370 TGGTCGTTCTGTACTGCTG 60 NA Rattus norvegicus 81 AABR07055511.1 ENSRNOG00000045896 ENSRNOT00000072277 3 1 1 60 7 4620851 4620869 GCTCAATACCTCTGTTGCC 59 4620893 4620911 CTGCTGATTCCTTAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359968 ENSRNOG00000048885 ENSRNOT00000060443 1 1 1 81 8 37209171 37210029 GCTCCCTACAAGCTTTGAC 59 37209108 37209126 TGACAGCAACCTTCTCCTC 59 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 3 2 2 80 9 53704937 53706129 GGAAGAAGATAAGACGATGTTGG 59 53706168 53706187 TGTACCAGGTCGATAGTTGC 60 NA Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000061114 1 1 2 80 20 4774543 4896478 GGTTCATTATCGAAGTCGGC 59 4774482 4774500 GCTCCATCCTCGGATTCTC 60 NA Rattus norvegicus 81 Trim25 ENSRNOG00000002341 ENSRNOT00000055674 2 1 1 80 10 76344434 76344453 ATATCTGCCTGGTAGAGCAC 59 76344496 76348629 GCCTCAGTTTGTTCTCCAG 59 NA Rattus norvegicus 81 Tnk1 ENSRNOG00000015578 ENSRNOT00000056860 1 1 1 80 10 56464290 56464309 TCATGATGAAACTGGAGCAC 58 56464126 56464249 GTTCCATCACCATCTGTAGAG 58 NA Rattus norvegicus 81 Pros1 ENSRNOG00000048723 ENSRNOT00000073689 2 1 1 80 7 1255243 1255262 ACTCCTGGAAGTTACCACTG 59 1255303 1258675 CTCATCCACATCTTTGCAGTC 59 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000041515 3 1 2 81 X 31710477 31710497 GGAACACCTCTATATGTGGCT 59 31708579 31710435 GATTCACAGATGCTCCTGAC 59 NA Rattus norvegicus 81 Rplp0 ENSRNOG00000001148 ENSRNOT00000001518 3 1 1 81 12 46792998 46793114 CCATTGAAATCCTGAGCGA 58 46792935 46792953 AACATGTTCAGCAGTGTGG 59 NA Rattus norvegicus 81 Dcaf7 ENSRNOG00000042245 ENSRNOT00000063858 1 1 1 80 10 94242860 94242881 CAAGAATTCAGACTTCTGTGCT 59 94242920 94243385 ATGCTTGAGGTTCCTAGAAGG 60 NA Rattus norvegicus 81 Tsr1 ENSRNOG00000002980 ENSRNOT00000003992 2 1 1 80 10 61755796 61756063 CAGAGGAGAAATGGAATGCAC 59 61756101 61756123 TCTCTTTATGACCATCCTGTCTG 60 NA Rattus norvegicus 81 Ssh1 ENSRNOG00000000695 ENSRNOT00000044751 1 1 1 80 12 48431739 48433278 CTAAGGAAATCCGAAATGAGCTG 60 48433315 48433336 GCATCTCGTTATCGATGAACTC 60 NA Rattus norvegicus 81 Erlin2 ENSRNOG00000013763 ENSRNOT00000018973 1 1 1 80 16 69191704 69193744 ATATCGGAGTATATTACAGAGGTGG 59 69191648 69191666 TGATGAACGGGAGCATGAG 60 NA Rattus norvegicus 81 Cmtm6 ENSRNOG00000010951 ENSRNOT00000014585 1 1 1 96 8 122797240 122804782 TTGCTGCAATTGTGTTTGG 58 122804842 122804860 TTTCTAAGAGGGCTCTCCC 58 NA Rattus norvegicus 81 LOC689959 ENSRNOG00000051792 ENSRNOT00000080736 2 1 1 95 8 55167378 55167399 TTCCAGAAGAGAAACAAGACAG 58 55165822 55166411 TTCATAGTCCTTCGTGCCA 59 NA Rattus norvegicus 81 Fes ENSRNOG00000011683 ENSRNOT00000016032 1 1 1 80 1 142178638 142179033 TCATCCAATCCTCAGATAACCT 59 142178579 142178597 ACAGCAGGTGAGTGATGAG 59 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 3 2 2 81 7 98194924 98194942 CGCAGTAAAGGACCAAAGG 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 2 2 2 80 1 6467830 6467849 CCTGAAGTCTGTGGAGAAGG 60 6467423 6467789 TGCAGATTTCTTTGCTCTTCC 59 NA Rattus norvegicus 81 Vom2r76 ENSRNOG00000045587 ENSRNOT00000074923 3 1 1 80 9 7658909 7660677 TTGCATTTACAGAGATCCCTC 58 7660719 7660737 GCTTGCTCTCCAGAATGAC 59 NA Rattus norvegicus 81 Ttpal ENSRNOG00000009076 ENSRNOT00000012606 2 1 1 80 3 160000563 160000581 TCTGGATTCCTCACAGTGC 59 160000624 160004242 CGGTATCCATCTGTCTGGTC 60 NA Rattus norvegicus 81 MGC94335 ENSRNOG00000015983 ENSRNOT00000021533 1 1 1 80 9 64099533 64099554 CTTATGTATCCAAGTTGCTGTC 57 64099595 64099985 TTAATACCTGCAGCACCTC 57 NA Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000071613 1 1 2 105 12 50397035 50397053 GAGAAGGGTGAGTACCCAC 59 50393155 50396378 TATGCTCCTGGGAATCTGC 59 NA Rattus norvegicus 81 Trim28 ENSRNOG00000027487 ENSRNOT00000029996 3 1 1 80 1 65544718 65544823 TAAGCTGACTGAGGACAAGG 59 65544657 65544677 AAGGCATCATTCATTCGTGTC 59 NA Rattus norvegicus 81 AC108546.1 ENSRNOG00000053404 ENSRNOT00000080448 1 1 1 83 8 62215271 62215289 TCCCTGCTCAAGATCACAC 59 62214182 62215225 TGAGAAGAATCTGCCCTGTG 60 NA Rattus norvegicus 81 Apba1 ENSRNOG00000014928 ENSRNOT00000020123 2 1 1 80 1 241793646 241793665 ACCACAGTGCTAATTAGGAG 57 241793705 241794821 CATGAGGCTACAGATAATTCCA 58 NA Rattus norvegicus 81 Zfp717 ENSRNOG00000014331 ENSRNOT00000019204 3 1 1 80 8 23282764 23282785 TAAACTTAGAACAGGGACTTGG 58 23280838 23282725 TATTCCCTTTGTCGATACCTG 57 NA Rattus norvegicus 81 Olr46 ENSRNOG00000018506 ENSRNOT00000024957 2 1 1 60 1 167759249 167759270 CTATGTTTATTGTGGTGCTGGA 59 167759286 167759309 CGTAGGATGAAGATATAAGACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 1 2 2 80 1 255934276 255934294 TGTACTACCTCCGTCTGCT 60 255932528 255934232 GGAGGGTCACATCATCGAG 60 NA Rattus norvegicus 81 LOC691141 ENSRNOG00000033256 ENSRNOT00000041091 2 1 1 80 8 22571461 22572332 CTTCACCAACACAGACATGTC 60 22575542 22575565 GTTACCATTGAGTCTTCTTGAGTC 60 NA Rattus norvegicus 81 Sytl3 ENSRNOG00000018321 ENSRNOT00000024967 2 1 1 80 1 47266148 47266166 TTGAAGCAAGACACTCCTC 57 47266207 47272077 GCTAATTAAGCTTCCATGTCTC 57 NA Rattus norvegicus 81 Rbp1 ENSRNOG00000013794 ENSRNOT00000018622 3 1 1 97 8 106468975 106468993 GGTGACAAGCTTCAGTGTG 59 106469054 106470609 TCTGCTCTCATCTCCAGGT 60 NA Rattus norvegicus 81 Wnt8b ENSRNOG00000013817 ENSRNOT00000018815 3 1 1 127 1 264260529 264261243 CTGGACCAAAGGCTTACCT 59 264261334 264261352 GGACAGCTGTAAGGCTCTC 60 NA Rattus norvegicus 81 Pole3 ENSRNOG00000055277 ENSRNOT00000089792 2 1 1 82 5 78383844 78383862 GTCAACATCTCCAAGGAGG 58 78383470 78383798 TTATTGGCACAGGATGTGG 58 NA Rattus norvegicus 81 Fam159b ENSRNOG00000013372 ENSRNOT00000017870 2 1 1 88 2 34963071 34963089 CAGACCTCAAGTACTGCTG 58 34957987 34963019 AATCAGAGCACCAATGCTG 59 NA Rattus norvegicus 81 Olr88 ENSRNOG00000060826 ENSRNOT00000079028 3 1 1 60 1 168404256 168404277 TTATCCTCATATCGTATGCCCT 59 168404298 168404316 GCCTCCTTCTGTTGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r46 ENSRNOG00000032817 ENSRNOT00000048152 1 1 1 60 1 67065488 67065508 TCTACAGTAATCGAGTGTCCC 59 67065448 67065466 AAACAACTCAAGAGGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311744 ENSRNOG00000005960 ENSRNOT00000036054 2 1 1 80 8 43322687 43322943 CAAAGTCTGATGACAACTTCAC 58 43322628 43322646 TCTCCTTGAAGCCAAAGTC 57 NA Rattus norvegicus 81 Gzma ENSRNOG00000010603 ENSRNOT00000014134 3 1 1 80 2 44973981 44981379 CTAATTCCTGAAGGTGGCTG 58 44973920 44973939 AAGTAGAACCATGTATGGCC 57 NA Rattus norvegicus 81 Notch4 ENSRNOG00000000442 ENSRNOT00000000513 2 1 1 80 20 4343068 4343472 GAGCCAAGGTGTAGAGATCTC 60 4343513 4343532 CAGCGACAGAAATAGGAGGA 59 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 3 2 2 81 2 218967497 218967517 TTAATGGTAGACGATGACGTG 58 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Ncr1 ENSRNOG00000018458 ENSRNOT00000025080 3 1 1 80 1 73225924 73225943 CACCTGCTTCTATCAGAGTG 58 73223542 73225883 GTGTCATACAGACCAGTTACC 58 NA Rattus norvegicus 81 LOC100911537 ENSRNOG00000042951 ENSRNOT00000014481 1 1 1 80 8 103820664 103822408 CACTGGAGAAGTTCAGGAC 58 103822451 103822470 TTTGGTTCACATGGAATGCT 58 NA Rattus norvegicus 81 LOC100911537 ENSRNOG00000042951 ENSRNOT00000014481 3 1 1 80 8 103874416 103874435 ACAAATTATCCTCCTGCGGT 60 103874474 103877715 CGATGAAGGCATCATATTAGCAG 60 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900,ENSRNOT00000077719 3 2 2 81 1 72880772 72880790 GACTCTTCGCAGACTCTCC 60 72880834 72881006 GATGGATCATCCCACAGGAG 60 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 3 1 1 66 3 153949310 153951982 GATTCAAAGGAAGATGATTCGG 58 153949265 153949283 ACTCAGATGGTCCTTTGCT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07071287.1 ENSRNOG00000031523 ENSRNOT00000048864 1 1 1 80 8 107711461 107711480 TGAGAATCATTTGGGTGCAG 59 107711521 107714694 TTTCCTGATGATGCTATGTCC 58 NA Rattus norvegicus 81 Ackr2 ENSRNOG00000019472 ENSRNOT00000026343 1 1 1 90 8 130538763 130541013 CAAGCATCAGAACTCGAGAC 59 130541066 130541084 TAGTCGTAGATGGAGCTGC 59 NA InUTR Rattus norvegicus 81 Dbr1 ENSRNOG00000014588 ENSRNOT00000019769 2 1 1 80 8 107836212 107836230 AAGAACAAGCAGGCAAGGA 60 107836269 107836508 TCTCTAACACCTGAAGAAAGTCTC 60 NA Rattus norvegicus 81 Dbr1 ENSRNOG00000014588 ENSRNOT00000019769 3 1 1 80 8 107836576 107836597 CACTGATGACCTGATGAATGTG 60 107836634 107837314 CTATAATCCCACCTTGTATGCAG 59 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980,ENSRNOT00000012545 3 2 2 80 8 122174066 122175816 TCACAAAGAGGTGGTGAGG 59 122175860 122175878 ACTTTGATGCACTGCTCTG 59 NA Rattus norvegicus 81 Bsx ENSRNOG00000024438 ENSRNOT00000028909 1 1 1 134 8 45063998 45064016 CTACCTGTCGACACCAGAG 59 45065121 45065139 GCTTTGGGTTCGTCTTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326,ENSRNOT00000089491 1 2 2 60 8 93493990 93494008 AGGTCCTTCACAACTCCAC 59 93494032 93494050 AGGAACACCCTGACATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000077635 2 1 8 81 20 4444208 4444226 AGTACGTGGTGACTGTCAC 59 4444271 4448323 TCAGCCCTGTCTGTATTCG 59 NA Rattus norvegicus 81 Olr747 ENSRNOG00000046816 ENSRNOT00000047270 1 1 1 60 3 102431617 102431637 CCTGAACCTTGCCATTTACAC 60 102431577 102431595 CAGTCTTCTCATTGCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1334 ENSRNOG00000058082 ENSRNOT00000088877 1 1 1 60 8 43848143 43848161 TGACACCACTACTCAACCC 59 43848101 43848119 AGTGCTTTCTTCACCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shb ENSRNOG00000011503 ENSRNOT00000015338 2 1 1 80 5 60992219 60994173 CCCACTGGAGAAACAAATATGG 59 60992160 60992178 CACTCCTTACAGAGTCGCA 59 NA Rattus norvegicus 81 Ccdc33 ENSRNOG00000008219 ENSRNOT00000058490 2 1 1 80 8 62862525 62863389 AGCTATACTGAGTTTAAGGCCA 59 62862466 62862484 AGGGAAAGAAACCTGGGTG 60 NA Rattus norvegicus 81 Spata21 ENSRNOG00000009058 ENSRNOT00000012147 2 1 1 80 5 159632577 159632598 TGGTCATGTGGATTTCAAAGAC 59 159632637 159632770 AGGACATTCTGTTCCACAGAG 60 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 3 2 2 80 2 227188351 227190467 TGCACCAGGATATTCTGGA 58 227188289 227188310 GACTGGTAGTACTTAGGAACAG 58 NA Rattus norvegicus 81 Anp32b ENSRNOG00000009266 ENSRNOT00000012478 3 1 1 80 5 62093391 62093412 AGAAGAGTTTGGACATGATGGA 60 62093450 62094205 CTTTCTTCCTCCTCTTCATCCT 59 NA Rattus norvegicus 81 Hmgcs1 ENSRNOG00000016552 ENSRNOT00000023554 2 1 1 80 2 52438178 52439424 GGCAGAAAGAGGGAAAGGA 59 52439467 52439486 CCAGTTTACAGTATGGCGAG 59 NA Rattus norvegicus 81 Tmem210 ENSRNOG00000040275 ENSRNOT00000061987 3 1 1 75 3 2504747 2504927 CATACCTGCTTCAGCTGGA 60 2504965 2504984 CACAATGAGGGCAATAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Rasef ENSRNOG00000024190 ENSRNOT00000058893 1 1 1 80 5 90463978 90463999 GGATCTGGAACTAATCCGAGAG 60 90464040 90465676 CGGTTAGCTGTTTGGAGGA 60 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 2 2 2 80 3 161805477 161805496 ATTGACACCATGTTCCACCT 60 161803061 161805437 CAAATGGAGACCTTCGAATACG 60 NA Rattus norvegicus 81 Snrpd2l ENSRNOG00000048758 ENSRNOT00000071064 1 1 1 61 20 28873327 28873345 CCCAAGAGTGAGATGACCC 60 28873284 28873303 CCTGTGTTGAATTCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr1l1 ENSRNOG00000006730 ENSRNOT00000008783 1 1 1 60 8 133128182 133128200 CGGGCATTTGGAATCACAG 60 133128140 133128159 TCACACCAATGACAAACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atoh7 ENSRNOG00000000384 ENSRNOT00000000432 1 1 1 175 20 27083155 27083173 TACGAGACACTGCAGATGG 59 27082998 27083016 AAGAACTTCTGCCCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sowahc ENSRNOG00000048831 ENSRNOT00000075800 3 1 1 60 20 28816603 28816621 GAGGAAGAGGAGGAAAGGC 60 28816643 28816663 ACTTCGGTCTCAGTTTAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1335 ENSRNOG00000059229 ENSRNOT00000081506 3 1 1 60 8 43853920 43853938 TGTGCTGACACCACTACTC 59 43853878 43853897 CTTCTTCACCTCCTTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1709 ENSRNOG00000050354 ENSRNOT00000044130 3 1 1 60 20 1185477 1185496 TATGTAGCTGTTTGCCTTCC 58 1185518 1185537 ACCTACACTTTCTGGGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911129 ENSRNOG00000045530 ENSRNOT00000041189 1 1 1 60 20 1173704 1173727 GTAATACCTCCTACTCTTAACCCT 59 1173740 1173764 CACTCTTTATGGTCTCATTTCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911129 ENSRNOG00000045530 ENSRNOT00000041189 2 1 1 60 20 1173704 1173728 GTAATACCTCCTACTCTTAACCCTC 60 1173740 1173764 CACTCTTTATGGTCTCATTTCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1695 ENSRNOG00000000746 ENSRNOT00000000973 2 1 1 60 20 859240 859261 TAATCCTCTCATCTACACGCTG 60 859201 859219 GAAGAGCCTTTCAAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defa5 ENSRNOG00000030093 ENSRNOT00000018501 3 1 1 114 16 75338280 75338815 AAGATGCAGATGTGAAGGC 58 75338184 75338202 CAGCACAGTCTGTAGATGC 58 NA Rattus norvegicus 81 AABR07072805.1 ENSRNOG00000047265 ENSRNOT00000071389 2 1 1 60 20 999247 999268 CAGTTATTCATGGCTTCTTTGG 58 999285 999309 CATATGATACCAAGATGAGTGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Clic2 ENSRNOG00000000728 ENSRNOT00000000955 3 1 1 96 20 295591 304754 GAGCTCTTTGTGAAGGCTG 59 304811 304832 ATTTAACTCCCTTAAGCCAGAG 58 NA Rattus norvegicus 81 Olr1682 ENSRNOG00000050389 ENSRNOT00000075114 2 1 1 80 20 438101 528573 CTGGAATTACCTATGGTGTCAC 59 438042 438063 CCAAGTGATCCATTTCATTGTG 58 NA Rattus norvegicus 81 Spag4 ENSRNOG00000019566 ENSRNOT00000026578 1 1 1 80 3 152145734 152145873 CTGACTCTAAGCCAATACCAC 58 152145914 152145933 GAGTTTACTCAGTTCTGCCT 57 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 2 2 2 80 3 148354055 148354075 AAGGATGAAACTCTGGAGAGG 59 148354114 148357120 ACTCTTTACAGTCTTCTCCCTG 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000018653 2 1 2 118 16 75597443 75599433 CCTTTCTGTCTTTACTCAAAGC 58 75597346 75597365 CTTTACCCAGTCCACAAGTG 59 NA Rattus norvegicus 81 Fam149a ENSRNOG00000021693 ENSRNOT00000034448 1 1 1 80 16 50088605 50088623 GGGATCCTGCCTAGTTCTG 59 50088666 50089743 GCCAGAAATACACAGCTCTC 59 NA Rattus norvegicus 81 Uchl3 ENSRNOG00000046120 ENSRNOT00000028960 1 1 1 80 3 171121586 171121982 AAGATGCACTTTGAATCAGGG 59 171121526 171121544 TCTGGCTCTTTCTTCAGGG 59 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615,ENSRNOT00000078862 1 2 2 80 5 101117169 101121091 GAGAGGAGACATTACAAGATGG 58 101117110 101117129 GGAGATGTGAACTGTGATGG 58 NA Rattus norvegicus 81 Rapgef4 ENSRNOG00000001516 ENSRNOT00000010630 2 1 1 80 3 58689701 58689719 GATTTCACCCAAACCTCCT 57 58689762 58692947 GTCGAAACAGTGTGATTCCT 58 NA Rattus norvegicus 81 Srsf10 ENSRNOG00000007992 ENSRNOT00000064925 2 1 1 80 5 154212744 154212765 TATGAAAGGAGGAGATCAAGGA 58 154212804 154213153 AGTCGGTCTACTGTTTCTAGG 59 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 3 2 2 80 5 152104583 152104607 CTCTATCTTATTCTGGACTTTCTGC 59 152102911 152104550 ATCCTCCTCTGTAAACATAACCTC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 1 4 4 112 5 160355994 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358566 AAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 Fhad1 ENSRNOG00000028064 ENSRNOT00000018953 2 1 1 80 5 160467365 160467385 CAAGAGTTCACCATAGTACCC 58 160466921 160467329 CATTAGTAAGTCATCTATCAGGTGG 59 NA Rattus norvegicus 81 Adrb3 ENSRNOG00000012674 ENSRNOT00000016907 1 1 1 159 16 69005100 69005118 TCAACCCGCTCATCTACTG 59 69005241 69005653 CCATCAAACCTGTTGAGCG 60 NA Rattus norvegicus 81 Prosc ENSRNOG00000013751 ENSRNOT00000018369 1 1 1 80 16 69164881 69165668 CAGCACGCTATTGAAGTAGG 59 69164820 69164840 AGGTTTCTTTGAGTAATCCCG 58 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000010298 1 1 3 115 3 153450221 153451892 GGAGAGCATCTTGGTCCAG 60 153450124 153450142 GTAGCAAAGTGTACAGCGG 59 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000080767 1 1 2 80 3 148082852 148091390 AGGTAATCCTGAGAAATGCTG 58 148091430 148091450 CAGTAGACATAGACGCTTTCC 58 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000009930 3 1 2 88 3 148082844 148091380 CTCACTCCAGGTGATGCTC 60 148091429 148091450 CAGTAGACATAGACGCTTTCCT 60 NA Rattus norvegicus 81 Il1f10 ENSRNOG00000005800 ENSRNOT00000007675 1 1 1 87 3 1415319 1415604 GTGAGCCAGAGAAGGTCTG 60 1415655 1415673 CAACTTCCTCCCTGGATCC 60 NA Rattus norvegicus 81 Il1f10 ENSRNOG00000005800 ENSRNOT00000007675 2 1 1 89 3 1415317 1415602 CTGTGAGCCAGAGAAGGTC 60 1415655 1415673 CAACTTCCTCCCTGGATCC 60 NA Rattus norvegicus 81 Cldn23 ENSRNOG00000011424 ENSRNOT00000015176 2 1 1 60 16 59989481 59989499 GATGGATGTGCTTGAGGGA 60 59989523 59989541 AGATGAGGAACCGTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkig ENSRNOG00000010235 ENSRNOT00000051590,ENSRNOT00000080707 3 2 2 112 3 160110205 160110223 AATGCAGTCCCTGACATCC 60 160114450 160114468 GTACTTCCCTCTGCCTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Gins4 ENSRNOG00000018040 ENSRNOT00000024301 2 1 1 81 16 73589722 73589740 CAGTATCCACCGAATGGAG 57 73589782 73592748 CTTCTCTATCTTCATGAGTCGA 57 NA Rattus norvegicus 81 Proz ENSRNOG00000019700 ENSRNOT00000026666 3 1 1 80 16 81795739 81795759 GAGTGTTACGAGGAAATCTGC 59 81794071 81795697 ACTCCAGAACTCATCCGTG 59 NA Rattus norvegicus 81 Erich2 ENSRNOG00000056087 ENSRNOT00000077551 3 1 1 80 3 56824211 56824232 CAAGGAGTATTGAAACAAACCG 58 56824272 56829292 CCTTGTTCACTTCACCTGAG 59 NA Rattus norvegicus 81 Defb9 ENSRNOG00000038149 ENSRNOT00000058061 2 1 1 80 16 75176455 75179041 ATGACACTCCAGTTGTTGG 58 75176393 75176412 AGTACCCTCTGATTCTCTGG 58 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803,ENSRNOT00000089065 1 2 2 81 3 64312318 64338473 CTTTAACTCGGATAGCCAGG 58 64312256 64312274 TTTCGTTGCCTCTAGAGCT 59 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 2 2 2 80 3 60029779 60029797 GACAGGAATGAAGCCTGGA 59 60029836 60032578 GGAAATATTACGAACTCCTTGGAC 60 NA Rattus norvegicus 81 Phf20 ENSRNOG00000019948 ENSRNOT00000027067 1 1 1 80 3 152338946 152338964 GAAGAGTCCACAAGAGACC 57 152339008 152343778 GAATCCACAGCAGTAGGAG 57 NA Rattus norvegicus 81 Cul4a ENSRNOG00000019649 ENSRNOT00000026653 2 1 1 80 16 81720189 81722033 AAATTTCCAGTAAAGCCTGGAG 59 81720130 81720153 GTCTTTGTCTCGTTCCATATAGTC 59 NA Rattus norvegicus 81 Purg ENSRNOG00000015426 ENSRNOT00000020683 2 1 1 60 16 62482089 62482109 GTTCTACTTTGATGTGGGCTC 59 62482049 62482069 CCTCACCTCACTTACCTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp804a ENSRNOG00000038004 ENSRNOT00000043974 3 1 1 89 3 69549765 69549784 GTGAACTTTGTGACAAGCAG 58 69549834 69567576 CTTTGAGCCTCTGCTTATGAG 59 NA Rattus norvegicus 81 LOC100362655 ENSRNOG00000045897 ENSRNOT00000018375 2 1 1 73 16 75123021 75123039 CCCTTCAGGTCATGAAGAC 58 75123076 75125450 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Fam171b ENSRNOG00000004783 ENSRNOT00000006504 3 1 1 81 3 71257818 71260230 CCCAAGCACTTTAGATTTGGG 60 71260272 71260291 TAGGATGGCTGTAAGGAACG 59 NA Rattus norvegicus 81 Marco ENSRNOG00000049303 ENSRNOT00000075773 2 1 1 81 16 85125847 85125866 GGTTTGAAAGGAAGCAAGGG 60 85118598 85120444 CTACAAGACCTGGGACTCC 59 NA Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 2 2 2 80 15 34237873 34238158 ATGTCTCACTTCTTGCCCA 59 34238201 34238220 ATCTTTGCTGTAGATGCCAC 58 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 3 2 2 80 15 36588783 36588801 TCATCGTTGCACTGATCCT 59 36588845 36589297 ACCAGTACTGAACCCTGAG 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 2 3 5 94 X 22286082 22288504 ATGACCTCCTTGTGGTCAC 59 22288561 22288580 CATATGCATTTCCACCAGGG 59 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 2 3 3 80 11 38055775 38055794 TGCCTTTACAACGGTTTCTG 59 38055834 38057691 ATGTCTTCAAGTTTGGACTTGG 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 1 2 2 80 5 171633606 171633624 CATGACGCAGACAGAACAC 59 171631329 171633565 AGGGATTCAAAGAACTTCTGAC 58 NA Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 2 2 2 80 2 143568670 143579544 GCATTTGTAAAGTACAGTGCTC 58 143579585 143579603 GAATAAAGCCTCTGCCACC 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 3 2 3 179 2 187863138 187863157 GAGTCTGAAGAGGTGGTCAG 60 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000090588 2 1 2 88 8 62930842 62931168 CATCCAGTCCAGATGGAGAG 59 62931394 62931412 CAGAGGGTAGTAGAGGGCT 60 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351 1 1 2 80 3 109866046 109866065 GCCTCAACAACAGATGTGAG 59 109866105 109866643 CCTGTTTAACATCTTTGTCGCA 60 NA Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000070912 1 1 2 80 3 109862291 109862310 AGTTTCCAGACCTACTGGAC 59 109862356 109862376 GAGTCTTCTTCATCTGCCTC 58 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 2 2 2 80 2 30361890 30361911 GTGATGATTCTGACATTTGGGA 59 30361949 30362148 TTAGAGCATGCTTAAAGGAAGC 59 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456 2 1 2 80 2 30363118 30363138 AACCTATCTGATCTGCTTTCC 58 30363179 30363408 AACTTGGCTTTCATTCTCCT 58 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621 3 1 2 84 5 14616882 14616901 CAGAATTAGCCATTGCTGCA 59 14616943 14617581 CACAGAATTTCTAGACTTCTTGGG 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 1 2 3 80 2 188405020 188405039 GAGAAGGAACACGCTAATGC 59 188404339 188404979 GAGATCAAGGTAGTCGTCCTG 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000080185,ENSRNOT00000065065 1 2 3 80 2 188405020 188405039 GAGAAGGAACACGCTAATGC 59 188404339 188404979 GAGATCAAGGTAGTCGTCCTG 60 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917 1 1 3 80 2 188398819 188399003 GCCTCCTCAATACCAAACAG 59 188398201 188398221 GCAGATACAAGAGGGATAGGA 59 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000091612 3 1 3 104 15 42664302 42664321 AGATGCTCAACACCTCATCC 60 42664388 42664407 GAGACCCGAAGTACTGGTC 59 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 3 2 2 84 2 30335904 30335922 GTGCTCAGACAGATACCGA 59 30334425 30335859 CCACTGTTTCTTCTCCTTTCTC 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 2 3 3 83 1 178388930 178390104 GCTGATTGATTCCTTAGAATGG 57 178390146 178390166 TATGTATTAGGTCTGTCGCCT 58 NA Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000079850 1 1 2 80 17 10139051 10139552 CACTGCAAGTAGTCAATACCA 58 10139594 10139612 CTTGAGTCTCTTTCTCCCG 57 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000073659 1 1 3 91 9 8091224 8091244 TTCTATGCTGCTTATCTGGTC 58 8093277 8093300 GAGTGCTATTGAAGATGGCA 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 3 3 7 80 11 46244233 46248739 TTACATCTGTGCCTTTAGAGAC 58 46244174 46244195 TTTGTAGTTCCTCTTCACTAGG 57 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346 3 1 2 80 1 32228140 32229686 ATCAACCCAGGAACAATTGTG 59 32229727 32229746 TGATGGATGCATACAGGGAG 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 3 2 2 80 18 28850548 28856922 CAACTCTCCTGCAAATGTCC 59 28850487 28850505 ATCTGGCATGTACAATCGC 58 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000085079 1 1 2 80 X 14909654 14909672 TTTCATGCGTTGCAAGGAG 60 14905428 14909610 ATACCACCAGCTCCTTCAC 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 2 2 2 80 6 26356247 26357946 ATGTTGCAGAGGTTCTCTG 58 26356185 26356203 CAGTGGTTGAGGAAAGTGG 58 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 2 2 2 80 1 205734235 205734255 AAAGATGCTCCTTGTGAACTG 59 205734295 205736861 GCTATTCTGACTGCTCATCTG 59 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000085905 2 1 2 80 X 22408833 22410066 CCAGTGAGGAAGCTAGTGAG 60 22408772 22408792 AGTTCACTTCACTTCCTTCCT 59 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000085005 2 1 2 82 1 101508040 101508058 AAACAAGCATGGAGTGGAC 58 101508103 101508975 GAAGGAAATGTGCTACACCA 58 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862 3 1 2 80 13 35599668 35599687 TTGAACACAGTAAGGGTTCC 58 35597518 35599627 TCTTGTAGCCTTATGTACAGC 58 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797 2 1 2 80 17 39509598 39510956 CATTCCTTCTGCAAACTCCTG 60 39510996 39511016 AAGACATGCAGGAATTGATGC 60 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 3 2 2 83 9 85483678 85487677 GAGAAGAGGCTCCTCAGTG 59 85483613 85483635 CCCACATCTGCTTTATATTCCAG 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000088536 1 1 2 104 1 189911473 189911617 GAGAGTCTACTGGTTGCGT 59 189910454 189911405 CAAATGAGAGTGCCTGGGA 60 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000015578 3 1 5 80 7 115787302 115787320 CAGACTTGTATCCTGTGGG 57 115790064 115792640 GCCATTCCATAACCTAGGG 57 NA Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 3 1 1 61 4 200782 200800 CATACCTGAAGCTGTGGAG 58 208553 208571 GGACAGTGAACACCATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665 1 1 2 80 15 40587858 40587877 GTTTGGAGAGTTCAGGATGG 58 40587919 40588398 CAACCACTATTGCTTTGGCT 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 2 3 5 80 17 39411785 39413113 CTTCCTTCTTTGGCACACTC 59 39413154 39413174 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 2 2 2 94 16 18962072 18962090 GTTCACCTTGCAACAGACC 59 18960734 18962015 TCAGGAACACCTTACACGAC 60 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 3 2 2 113 3 146981133 146983297 CAGATTGCACTTGCAAGCT 60 146983368 146988573 TACTCTATTATCACTAGGAGCTGTG 59 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000059895 1 1 2 85 10 18359776 18359795 AGAACTTGCAGTTCTCTGGT 59 18250390 18359728 GGGCATACACCTTTGAGGT 60 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000078913 2 1 3 89 2 188174021 188174039 GACTTTCGAACTGACCGTG 59 188174894 188180296 GACTACAGATTGCACCGTC 58 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000068353 3 1 2 87 15 39893957 39893975 AAGAAACGGATCCGATGCA 60 39893027 39893906 GGTATTTGACCCGTCATGC 59 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108 2 1 2 91 9 47176713 47178140 CCCAGAATGATGGAAAGCTC 59 47178194 47178212 AAAGTACTCCACAGAGCCG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000074002 1 1 10 92 2 231335941 231335960 CCACATTCGCCAACTATCAC 59 231335866 231335888 GAAACTTGGCTATCGACTGTG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637 1 1 10 80 2 231280338 231280356 GGCTCTTTCTTCCAGTCCT 59 231269938 231275852 AAACTGACTAGGAAACTGCTG 58 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 2 2 2 136 9 9984378 9985199 GAGCCAAGAAACACCAGAC 59 9983270 9983288 CTATGAGGAGGGTTCCCAG 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000079947 2 1 3 127 4 157251835 157252562 TCTATAAAGTGGTTTCACCGG 58 157251728 157251746 ACTGAGAGGGAGAAGTCAC 58 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000049426 1 1 4 91 9 117651277 117651295 AAAGAGGCTCTCCACATCC 59 117651349 117660582 TTTCCAGTTTCTCCTCAGGT 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849,ENSRNOT00000088647 1 2 4 90 9 117651351 117659910 CTGAGGAGACTAAACAATCTTCTG 59 117659959 117659977 AACTCTGTGGGTTTCCTCG 60 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 3 2 2 80 9 9744981 9745000 TGCATCAGTCACAGGATCAG 60 9745041 9746516 TCTTGTACACGTAGTCCACTC 59 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000075494 2 1 2 80 9 9735481 9735501 GTCAAGGTCTTCTCTGGCT 59 9735544 9735563 TCCAGAATCAGCCATTTGAC 58 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000084258 2 1 2 80 6 83426442 83426462 ACATCTCAAAGAGCACATACC 58 83431893 83432124 TGGCAGAATCTGTGTTTCC 58 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000077624 1 1 2 87 4 119915817 119915835 TTACTTCGAGACCAGTGCC 59 119913856 119915767 TTGTGCATGCTGTTTAAGGG 60 NA Rattus norvegicus 81 Defb26 ENSRNOG00000053114 ENSRNOT00000087431 1 1 1 68 3 147985562 147985580 TTGCTAACTCAGGTGACCA 59 147982495 147982515 CCCTAAATTATCCTTCCAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 3 2 2 80 9 119858839 119858861 CTATGAGAAGTTCATGACTGGAG 59 119857203 119858802 TTATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000027091 1 1 2 123 1 220244934 220244952 GTTCCATCATTGGCTCTGC 59 220246135 220246154 CAAATCCGCCTCTTCTGAG 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102 3 1 2 115 4 114880003 114880024 TTCTTCTGCTTCAAAGATCCTC 59 114883395 114884659 GTCGAGTTGTGGTCTTTCG 59 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 1 2 2 80 15 48425583 48427702 TTCACAAGTATTACGCCTACC 58 48425523 48425545 CACAGTTGATATACTCATCCACC 59 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000084481 2 1 2 84 14 104489460 104492915 TTAGGTTTGCGGATGACAC 58 104492962 104492981 CCGTCTAGCTCTATAGTCCG 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 2 2 2 80 15 41315817 41316142 GTCACTTGTCCTGTAAAGCA 58 41315756 41315774 GGACACAGTTTCCAGATCG 58 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 3 2 2 80 1 73659764 73659924 AGTGACAGGACTCTATAGTAAACC 59 73659707 73659725 TGAAGTGTCACAGTCTCCC 59 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000028585 1 1 2 80 1 89391732 89391750 TTACTGCTCTGTGGTCTCG 59 89388044 89391688 AAGAGCCAATCAAGGACGA 59 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678 3 1 2 110 1 89391705 89391723 TCTGGATGGAAACAACGAG 58 89388044 89388629 AAGAGCCAATCTTCCAAGG 57 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188 2 1 2 80 11 47193058 47193078 TCTTCTGCTATCTGTTTGTGG 58 47193119 47218324 TCTCATGGTCCAAGTACTCC 59 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 1 2 2 81 20 248554 248573 GTGAATTGTACTTGGCACCA 59 250938 254199 ATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000011770 1 1 2 80 4 174755803 174755822 AAGAGGCTCTTCAGAAACAG 58 174757877 174760302 CTATAATCTGGACCCTCGCT 59 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 1 2 2 85 3 123690556 123693735 TAGTCAAGGTAGGCTTCCTG 59 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000001203 1 1 2 86 12 6303355 6303373 GAAACGGATGTTCCAGCTG 59 6303423 6303658 GTTGCCTGTCTCAAACAGG 59 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000083666 1 1 2 80 8 64494729 64494747 GTGTTTGCGTCTTTCATCC 58 64494789 64495802 TAGGAAGACCTTCTCCTTCTC 58 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000083666 2 1 2 80 8 64494730 64494748 TGTTTGCGTCTTTCATCCG 59 64494789 64495803 CTAGGAAGACCTTCTCCTTCTC 59 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000010373 2 1 3 85 5 142717682 142717702 AGATTGAAGATGCTGTCTCCT 59 142721316 142722102 ATATTCTTCCTCGGTGTCAGG 59 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 1 3 3 80 11 53528276 53529908 GCATCATGGCTTGTGAACC 60 53528214 53528235 GTCCAAGTAATTCTGCTAGAGC 59 NA Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699 3 1 2 81 17 42639903 42640148 TGATGGACAGGAAACAGAC 57 42639840 42639860 AAATTGACTCCTTCCTTGAGG 58 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 3 2 2 81 7 9826344 9826364 GATCCTTCCCAGAAGAATCTC 58 9826088 9826304 CTTCCCATTTACACCCTATACC 58 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162 3 1 2 82 15 39838929 39838949 CTGAAACTCATGATGAACCTG 57 39838992 39847145 GCCACAAACACCTTAAAGAC 58 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162 1 2 3 80 10 38891201 38891220 ACGTTCATCTCAAACTGACC 58 38891263 38891603 CTATGGGCCTGTAACTGTC 57 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000082359 1 1 5 107 4 22375497 22375515 GATGACGACGTACCTCCAG 60 22375407 22375429 GCAAGCCTCATTTATTATGGCA 60 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202 1 1 2 80 2 61409224 61411954 CGAGCAGAGTTGAATCCCT 60 61409162 61409182 GGAATCATGCTCTGCTTTGAG 60 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 2 1 2 81 10 15242599 15251700 CCCTCAGATGCAGGTTCTC 60 15251744 15251763 AGCTTCCTTCTTCCTGTTCC 60 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 2 1 2 120 10 15242579 15242597 CAACGTGGACTTTGACCTG 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 3 2 5 82 16 19727743 19727762 TAGTCCTGTCACTCGAAGTC 59 19727807 19730706 TATGCAAATCGCGGTACAG 58 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 2 2 2 80 17 42736622 42736642 CTCTTTGACCATGCTATTGTC 57 42726718 42736581 AAATGCATACCCAAACTCCT 58 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000042713 3 1 2 81 11 38677456 38678004 TACACAATATAATGCCGACCTC 58 38677396 38677416 GCTGACATTTCCTTCTTTCTG 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 1 3 3 91 7 116158804 116159099 GGATATCATCTCTGAGTATGTCAC 58 116158736 116158754 CGGATATGACACTCCAGGA 58 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000050547 2 1 2 80 13 90275115 90275134 TATGCTCATTCCAGTGGTGG 60 90275176 90276012 ACATCATCTGCTTCCAGGAC 60 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 1 2 2 80 18 29504374 29504670 ACTGCGATGATGACTTGTG 58 29504312 29504331 CATCACGGATCTTTCTCCAG 58 NA Rattus norvegicus 81 LOC100365995 ENSRNOG00000031385 ENSRNOT00000041100 2 1 1 91 4 70617025 70617406 GTCTTGGTGTGAACAACCC 59 70617460 70617479 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 1 2 2 117 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571942 21571960 AAGTTTGGCAACCATCAGC 59 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197 2 1 2 125 5 16975565 16975583 TCTTACCTCTCCTGGAGCA 59 16973156 16975476 TTCGGCTCTCCTGTTTGAG 60 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000061780 3 1 2 84 5 16975428 16975480 GTTTCTCAAACAGTTGATTGGG 59 16973168 16973189 TGTGAACGAAGTCATACATGTG 59 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332 3 1 2 80 4 79895950 79895971 AAATATTAGTGGAAGCGTCACC 59 79896012 79906815 CACTTGACAAACACCTGCT 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000087094 3 1 2 83 12 13097497 13100062 TGTGTTTACAAGGAATACAGCC 59 13100106 13100124 GGGATGTACTCTCCAGGGA 60 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 2 2 2 84 19 25953024 25953173 ATTTCTGGCTCTGTTCCCT 59 25952827 25952846 TCTCATACTCAGAGCCAGTC 58 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999,ENSRNOT00000077569 3 2 2 80 10 38931437 38932182 GGTTGGAGGTTAAAGAAAGGC 60 38932224 38932242 TGTCGTCAGCATTGTTGAC 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063 3 1 2 85 17 45255676 45255696 AGAAAGTAGCCAGATGGAGTC 59 45255741 45256028 CCTGGGTGACTCTAACTTCTG 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 2 3 9 101 20 2087659 2087971 AGTTCTGAGCACTTGAAAGC 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 1 2 2 80 2 178594131 178597008 GCCAGCCAGTATGATTTAGAC 59 178594071 178594090 GTAGGCCACAAAGTAGACTG 58 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678 1 1 2 80 4 115181589 115181608 TGGTGTTGAACATCAGTGAG 58 115180552 115181546 TGTCTGAATCTCCCTGCTG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000041921 1 1 4 80 3 8453650 8453669 GGATGAGAACACTCCTGTCC 60 8453710 8454015 CGCTTATGAGATTTCTGGCTG 60 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 1 2 4 82 X 54235604 54235622 AATCCGTTACTCCACCTGG 59 54229835 54235559 ATGGGATACCACTTTCAGGA 58 NA Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 1 2 2 83 9 5323394 5329139 TTACCATGACAGCCACCTG 60 5323329 5323347 AAGCTAGACCACAACCTGG 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521 1 1 2 80 6 137946274 137946292 TGTCATCAACAATGGCTCC 58 137946334 137946557 TTCTTCATGTTGCCATCTACC 58 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 3 2 2 80 4 79977098 79977117 CTTCGTTTGGAACTCTGAGG 59 79956753 79977056 CCAGATTAACTGTTCTCCCG 58 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000041165 2 1 2 83 20 14584859 14584877 GAGTGATCACCAGACCCTC 59 14584923 14586552 AATCCAAGCATTCCTTCAGG 58 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 3 2 2 80 1 142422407 142429030 ATACATGGGTTTCTGTGATGGT 60 142418649 142418670 AACAGATTCTCTTCCTTCAGCA 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000080013 2 1 2 81 6 6637363 6637384 GGATGTTGACAACTATGATGAC 57 6637424 6638642 TCCTCGATAACCATATACCCA 58 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470 2 1 2 80 18 29590860 29590882 CTTCAGGAAACTTCTTATGACCC 59 29590922 29591618 CTTGGCATCTCATGGTGAC 59 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000043271 1 1 2 80 18 29607658 29607767 GTCGCCCTCATGAAATACG 59 29607809 29607829 GAAACCGTTCCAATTGAAGAG 58 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792 1 1 2 80 8 123326998 123327017 TCATCAACCTCATCCCTCTC 59 123316786 123326959 CAAAGACACCTATGTAGACTCTC 58 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469 2 2 3 80 9 10641920 10642103 AGCTTGAGTTCAAGAGGCT 59 10642146 10642165 TAAACTTGTTGCAAGGCAGG 59 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 3 3 3 84 18 47505055 47505427 CATTCTAAAGGTCAGTGTAAACCC 60 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 2 2 5 82 1 20916153 20916171 TACTACAGTCCAGGATGGC 58 20903360 20916109 CATGTGAACTCTTTCCCTCAG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000084207 2 1 3 80 4 181120394 181124746 GATCAGGTATCAAGATCGGGA 59 181124785 181124806 AAGTTGTTCCTTTACTTTGGCC 60 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 1 3 3 80 20 2096797 2096815 GCCAGAGAAGAAGGTGGAG 60 2096857 2097247 ATACAGCAGCATTTCGATGAG 59 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000080694 2 1 4 80 19 41163256 41163275 TTACGGTCAAGTTCTGGGAG 60 41161790 41162226 CTGTGACTTGTACCAGTTTATCAG 60 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 2 2 2 80 5 36568194 36578039 AGCAGAAGTAAGATGGGAGAC 59 36578081 36578099 CGAGGTTTAAACTGGCGAG 59 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000082691,ENSRNOT00000011659 2 2 2 65 6 51017103 51017121 AAACTACCATGGTGAGCCA 59 51015548 51015566 TGGAGCAGTTGGTATTTCC 57 NA DesignNoJunction Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 1 2 3 80 5 57447663 57448321 GTTGACTGCTGAGGAACAG 59 57447601 57447620 GTAACGATGACCATGACTGG 59 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 2 2 2 80 17 8516244 8516693 GTCAGCTTTAAGGTTGATAGCAG 60 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 1 2 5 80 1 80524477 80524496 CTATGGTGTGGACAAGAAGC 59 80524300 80524436 TCAATTCCATGTGGATCAGAG 58 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 2 2 2 80 3 111057716 111057962 CAGTGTTAAGAGAAACCATCCAG 60 111058000 111058020 GTTCTTGTCAGTTGGAACAGG 60 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290 1 1 2 80 1 247133384 247133405 GTGACAGTTGAGAATCATGCTC 60 247133446 247134246 AAATCTTGGAGCCTGTGGT 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 2 2 5 80 15 10296381 10296399 GGCATACGATTTAGCTGGT 58 10293156 10296338 CTGCGAAATCCATTTACAGG 57 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326 2 1 2 80 9 71255040 71255058 TTCAGTCTCCACAAGTCCA 58 71255803 71262311 TAGTTGAAATCTGAGTTCCGG 58 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542 2 1 3 93 8 1560195 1560214 AATGAACAAGGCCTCTTGGA 60 1552099 1560139 TCGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 3 2 2 80 1 101884698 101886181 CCTCCTGATACAGGAGTTCC 59 101886223 101886242 GTACAGAAGTCCACATGAGC 58 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000034784 1 1 4 80 14 22433567 22484546 AATGACATCCTGGGTCATCC 60 22484585 22484607 ATGATAGATGGCCTCATAGACAC 60 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 2 3 3 82 17 43667355 43667373 AGTGGGATCACCATTTGTG 58 43667419 43668789 ATGGTTCCTCCTGAAACCT 58 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000079513 3 1 4 81 4 152461622 152461640 GCTGTGCGAAGTTTAACTG 58 152458825 152461578 ACCATCTTCCTCAGAAATCG 57 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000011571 3 1 2 81 15 103213990 103214010 CCAACTTGGCTACAATTATGC 58 103208377 103208398 GATTCCAATCACTGAGAGGG 58 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 3 2 2 195 10 29177398 29179206 TCCTGCTGGTAGCATATGAC 59 29179364 29179382 TATGCCAAGCACAAGTCCT 59 NA InUTR Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 3 1 1 61 13 50740310 50740328 CAGAGCTCAGGGATACAGC 60 50737223 50737241 AGGTAGAGAAACTGCAGCT 58 NA DesignNoJunction Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000085439 2 1 2 80 1 219310115 219310242 CACTATCTCCATATCTGTAAGGAGG 60 219310059 219310080 AAGAGTTTCAAATGGCTTCAGG 60 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000066691 3 1 2 80 1 219309829 219310238 ATCTCCATATCTGTATCTCCTTCG 59 219309772 219309790 AGTAACCAGGGAACAGGAG 58 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254 3 1 2 81 1 214602450 214602469 ATGGTAACAAGACCTCCACG 60 214602509 214603723 AGGTTCAGATTAGTCTGAAGGTC 60 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 2 2 2 80 11 67659942 67662001 ACAGATCCAGACTGTGATAGAC 59 67659883 67659901 TTTCTCGTCCGGAACTCTG 60 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000081715 1 1 2 80 20 8304488 8304506 TAAGATGGTGGAACGCCTG 60 8304548 8304732 AATTCCCTTCTTCCTCTTCGT 59 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 1 2 2 80 14 107792110 107794195 GATGATTCTTCTAGTTCTGCATCG 60 107794234 107794252 TAGGTCAGGCTCTGAAAGC 59 NA Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 3 2 2 143 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529856 50529874 GGCATTAACGAGTTCCTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 1 2 2 80 16 758273 758291 AATGACACGGTAACCATCC 58 758333 758433 AAGGACATCAATGACCATCTG 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 1 3 3 84 7 2907679 2907935 AAGAGCGATGAGATGAATGTG 59 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 2 2 2 81 1 101844000 101844018 CTCTACCTGGTTACCAACG 57 101843371 101843955 GCTGATAGAACACCTCACC 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000018440 3 1 2 92 15 52376449 52376468 CACCAACTTGAAGTACTGGG 59 52375422 52376399 CTTACACTAGGATATCCAATGGAG 58 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679 3 1 2 80 20 12674071 12674091 TGGTGAAGGAGAACTATGCAG 60 12674127 12674746 ACTTCTTATCTATACAGATCTGGGC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000022281 1 1 2 80 9 89072891 89072969 GAGCATCCCTCATTTGATAAGG 59 89072832 89072850 ATTGCTAGAGGGATGGCTG 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 2 1 1 74 20 2541198 2541217 AATACACATGCCATGTGGAG 58 2541021 2541039 GCATACTGGACTGAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 2 2 8 109 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709853 68709871 AACTCCATGAGGGTCACTG 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000079607 2 1 2 85 17 56962227 56962245 AAGTGCACGGTAAATTCGT 58 56961185 56962180 CGTAAGGGCCTTATCTAAAGC 59 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152 1 1 2 80 11 66799437 66799456 TCTCCACGAAGATGAACTCC 59 66797946 66799395 TGCATCACCCTCAATTTCTG 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685 3 1 4 82 10 67614963 67614981 TTGTAACACTGCTGATGCG 59 67615025 67616001 CTCTGTAATGATCCTCTGGGT 59 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832 2 1 2 96 10 15998616 16009597 GTTCTCTGCTTATTAATGGTCAGTC 60 15998544 15998562 CCCAGACCACTGTGAAGAG 60 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082,ENSRNOT00000076495 2 2 2 108 4 7109883 7110525 ATAGAACAACTGCAGGCTC 58 7109793 7109812 GAGAGTGTGGAATGAATGGG 58 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256 2 1 2 80 4 84376517 84424808 ACACCAGTGGAGAAGATCTC 59 84424848 84424869 TGTCTTCTCATAGTTGAAGTGG 58 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 2 3 3 84 13 50754129 50754148 AACAAGATCAGCAATGTGCC 60 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 2 2 2 80 8 97454812 97457079 GGTGTCTACTCCAGTAACTCC 59 97457120 97457139 CTGTTCTCCATAGCCAACAG 58 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 2 2 2 80 5 19520403 19520424 CCTTCATGAGTGGATTGATCTG 59 19519833 19520362 GGGTGAAACACGTTATGGG 59 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000068190 2 1 2 94 14 110757983 110758001 CCTTGGTTACTGCATGCTG 59 110755101 110757925 TTCATCCAGCAGTGGTCTG 60 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000074146 2 1 7 80 17 57074591 57079362 GTAACTGGAGATGAAACTGATGAG 59 57082576 57082595 GTAAGTTGGCATGTCACCTG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 1 2 7 80 17 57067671 57079369 TTGTTCAAGATGAGGAGACTG 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269 3 1 2 82 7 29562227 29563273 CAAGTCAGTAAAGAAGTCTGCC 59 29562166 29562186 GATAGCCTCATGAATGGACAG 58 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 3 2 4 82 7 143124231 143124984 GCTCTGAAGAAGGATGTGG 58 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000065011 2 1 2 80 1 88725221 88725241 CAATATGAAGCACATCGTGTC 58 88724388 88725180 ACCACAATGTCTTTCTTCCA 57 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754 2 1 2 80 20 18932170 18932189 CAGACCAGGATCTGAAGGAG 59 18932229 18937901 TACTTAGCTCTGAAATTGCCAG 59 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000008760 1 1 3 81 3 92708103 92721564 CAGAAAGCAAGGGACACTC 59 92708040 92708058 GGAATCTGAGGTCTCCTCG 59 NA Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994 2 1 2 80 19 25829176 25829195 CCTTCCTATGCCTGATTCCA 59 25826959 25829136 GTTGTGAATGAAGGTGATGGAG 60 NA Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 2 1 1 64 2 115363921 115363942 TACTCATCCAGTAGAAGATGGA 58 115364107 115364125 CCTTCTCCCGTAGAAACTG 57 NA DesignNoJunction Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 3 1 1 64 2 115363922 115363942 ACTCATCCAGTAGAAGATGGA 58 115364107 115364126 ACCTTCTCCCGTAGAAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 1 2 2 80 2 149547639 149547658 GTCTTTCTTCCTTGTGAGGC 59 149545979 149547601 GGATATTTCAAGTCCTGATGAGAC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078463,ENSRNOT00000058735 2 2 11 96 6 99141822 99141840 CTCTTGAGTGGGATCACAC 58 99141898 99142441 ATTTCTACATCTGACAGTGCG 59 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299 3 2 3 191 13 52628706 52631324 GTTGAGAGGAAATCTAAGATCACTG 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000023542 3 1 2 80 3 3330058 3336027 ACTCTTCCCTTTCTCAGGTC 59 3336069 3336088 TGATGAAGAACAGCTTGAGG 58 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060 3 1 2 143 14 81819838 81822916 CGAACAACAGGTCTTCACAC 60 81828406 81828424 TCTTAGCACGCTTCAGGAG 60 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 1 3 3 80 4 125694235 125694255 GACTAATGCGGAGAAGATTGC 60 125694034 125694193 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160 1 1 4 80 5 104673508 104698079 CACATTAGCAGGAAAGCCAC 60 104698121 104698140 ATGTCCACTGTGACTGTAGG 59 NA Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 3 1 1 60 7 116633672 116633692 CTGTATCACAGTCATCTCCCA 59 116633828 116633846 CATGGAGTAGGTCGTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 3 2 2 80 1 72644962 72644982 TGACATTCTGTTGATTGCTCG 59 72645022 72645123 AGGTCTAATGGGATCATCCTG 59 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718 1 1 2 80 5 99009516 99009534 CTGGACACTTTGAAGGCTG 59 99009577 99177729 TCTGAGTTTGCACCTACTGG 60 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 3 2 2 91 3 111023736 111023754 AGATACTTCTGAGCCCGAG 58 111023463 111023681 AGTCTTGGAGAATGGCCTC 59 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000081290 3 1 2 96 17 52364460 52364479 AAGATGAAAGCAAGCAGGAG 59 52308169 52364398 TGATGAACAAGCTGATCCTG 58 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000082160 3 1 2 80 10 83122630 83125362 AGTTCTCAAGATTCCAGCCC 60 83122569 83122591 AGTCACTCTTCTGGTAGAATAGG 59 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265 1 1 2 80 1 199687626 199688138 ATCCCTCAGAAGCATCTCC 59 199688181 199688200 CTCTTCAGCATCCAGATCCT 59 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 2 2 2 80 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864998 117865019 AAGACCTTGTAGAAAGCTTCCT 60 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 3 2 2 81 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864999 117865020 GAAGACCTTGTAGAAAGCTTCC 59 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792 1 1 3 109 2 177855498 177857106 CTTATGTTCAGAACTCGGTCG 59 177855409 177855427 TTGAGGAAGGAACTACGGC 59 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792 3 1 3 110 2 177855498 177857105 TTATGTTCAGAACTCGGTCG 58 177855407 177855426 CATTGAGGAAGGAACTACGG 58 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693 3 1 2 80 18 58366971 58368959 CTTCTTGTTTCAAGGGTTTCGT 60 58366912 58366931 GTTGTATCTGTCCACACCCA 60 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 3 2 2 80 17 54670697 54670716 ACACCTTTGCATACAGAACC 59 54668771 54670655 ACTGTGTCACATGTCTTTGC 59 NA Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000082688 1 1 2 93 15 87776861 87777266 AGCAGAAGAGGTAAAGACCT 58 87778445 87778463 TAATCAGTCCACCGAGGTC 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 3 2 2 81 5 139816389 139816407 CCAGCTGGAGGTAGAAGTG 60 139816451 139816730 CTTGATATAGGTGGCTGGGA 59 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975,ENSRNOT00000036051 3 2 2 184 8 48422182 48426011 GAATTCAAAGAGTGCCCAGG 59 48426975 48427869 TTGCAAACTCTTCCATGAGAG 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000043602,ENSRNOT00000041872 3 2 4 86 6 99180255 99180274 TAATGGTGGGACTGATGTGG 60 99179347 99180206 CTTCTGAGGACCTGTCCAG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000042743 2 1 7 81 15 5467008 5467027 GCTAGTTCAGAAGGAGAGGG 59 5466198 5466967 CCGAATAAACCAAGACAGAAGG 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951 3 1 3 109 10 75089429 75089869 ATGTCACAGACGTGTTGAC 58 75089942 75089960 GGTTCGATACTTGTCCTGC 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 1 4 4 80 12 19962769 19963219 AGTGGAGCAACAGATTCCT 59 19962707 19962725 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 3 2 2 83 12 11433879 11500483 ATCCGTCTGACAGTATTGTG 58 11501753 11501772 CACAACAATCTTGGCAAAGG 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496 3 1 2 100 10 31340861 31340881 CTTGGATCTGTACAACGACAG 59 31339588 31340799 AAAGCACAGGTTCACTTGC 59 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555 3 1 2 91 1 251203320 251203339 GCTCAAAGGCTTTATGAGGG 59 251207726 251213374 TGATGACTCCATCACGGAG 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 1 3 4 80 4 85592302 85593319 AACTGCTAACAGAGGAGAAGTC 60 85593360 85593378 GGGCTACAATGGAGATGCT 60 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000048404 2 1 3 81 1 150505718 150609151 ATTTCCAACATGACAGACATGG 59 150609191 150609211 TGAGGCAGTTAGTCTGATCTG 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 3 1 1 101 10 45534518 45534537 AGAAGGTTTGCATTTCCAGC 60 45528691 45528709 ATTGTGGATCTCCTCCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 3 2 2 80 17 27444096 27445259 AAAGAAGCAGAATCGTATCGC 59 27442603 27442622 CATCCTTGTTCTGGGATCCA 60 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000031173 2 1 2 60 1 84640188 84640206 CCTACAGTCACCTCGTCAC 60 84640233 84640252 TGTATGTGACACATCACCCA 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873 1 1 2 88 16 2890640 2984453 GCAGTCTTGACATAAGTGAACC 60 2984502 2984520 CTTCACAGGTGGGATGAGG 60 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 1 5 8 82 20 1963408 1966088 AAGTGGATTGGAGGGTCTC 59 1963344 1963367 GAGATAAAGAGTTTCTGAGACAGG 59 NA Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 2 2 2 80 1 47644894 47647592 AGAGTTGTTGCATCAAGACAG 59 47647633 47647652 GGAGACTTGCTTGTAATCCC 58 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000041130 1 1 5 183 4 140396761 140401964 ATTACTTGGCAGCAGAGGT 59 140402110 140409761 ACATAGGAGTTCCTTGGGAC 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 1 2 2 80 9 10745485 10745503 GGTATTCATGGTCGGAGCA 60 10744463 10745444 ATTGCCATTATCCACATCATCC 59 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000083956 2 1 3 81 7 143451765 143451783 AAGAACGACCAATCACGGA 59 143323595 143451720 CATCCTCGTACTTGGTCCT 59 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504 2 1 2 121 8 115151733 115152930 TTGATCTGCCAGGTCTTGG 60 115153015 115153033 CACAACTAGGGATCCCAGC 60 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000079260 1 1 2 94 17 78497745 78499808 CTCACTATGTGCAAGACGG 58 78497669 78497687 TTCTATGTAGTCCGGCTCG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 3 2 4 139 1 50930294 50930312 AACTGCTGCAATAGTCCCT 59 50930412 50931121 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 1 2 2 80 4 129502963 129502983 GGATACTGTAAACTTGACCGT 58 129499975 129502921 TAGCTCAGCAAACCAAGAC 58 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000003689 2 1 5 82 13 78772428 78775013 ACCTTATCAGCAGGGTGTG 59 78775058 78775077 CAGATTCAGGAGCAGATGGT 60 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000082221 2 1 2 80 1 214477322 214478030 CACAACAGGTACATACAGACG 59 214477262 214477281 CTCAAAGAAGTGTTCCGCAG 60 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 2 2 2 80 20 13606635 13607572 ATTGCAGATGACCATCTCCA 59 13606574 13606598 CATATCTTTGTCTAAAGCCACTCTC 60 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073 2 1 2 60 4 480681 480700 ACCATCTAGCTGATATGCTG 57 476987 477005 CTGTTTGTAGGAGTGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193 1 1 2 80 10 37051140 37051158 CAACAGCAGTATGGCTCTG 59 37050398 37051097 CCAACTCTGACTCTGACCTC 60 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000082205 1 1 2 80 8 49698668 49698688 GCAGTTTCAATCAGAAACCCA 60 49699378 49702192 TTCTGGAGGCATTTGTGGT 60 NA Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 3 2 2 80 17 10088775 10088793 AAGGAGGTGAACAACCAGG 60 10088837 10090042 AGACCAGCGACTATTCAGG 59 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 1 2 2 80 5 151194045 151194063 TGGCTACTACATCACCACG 59 151194107 151196481 AGACCGTCATTCACTTCCA 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 1 4 4 80 1 265551480 265551498 CAAGTACACATACCCTGCC 58 265551295 265551437 TTGTTCCTGTCCATCTTCTG 58 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572 3 1 3 104 X 104895076 104895769 GAGTTCAAGTGCCAATGCA 59 104895837 104895855 GATCATTGGGAGCATCACC 58 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509 3 1 2 80 13 92332872 92332891 TTTGAACAGAATGCCAGTGC 60 92333980 92334871 TTCCTTGAGCAACGATCCA 59 NA Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000080485 1 1 2 80 3 150380385 150380403 CATCAACATGGCTGGAGAG 58 150380446 150382545 TCAAACAGCCTGTATATGGC 58 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005 2 1 2 82 3 113252194 113253058 ACCTTGAACAAGGGATTCTC 58 113253103 113253121 CCGGGTAATGAAGAGTCTC 57 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000091057 1 1 2 80 11 65799328 65799346 GAGCAGAATGAAACAGCCG 60 65797609 65799284 ATCAACACAGAGGCCTCTG 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000085650 1 1 3 81 7 104700051 104700069 CTACGAGCACAGATTTGCC 59 104681976 104700006 ACATCGTTACCTTTCCCGG 60 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000012640 3 1 2 123 7 143222710 143222728 CTACAGGAAGCTGCTGGAG 60 143219704 143220767 TGTAGAAGTGACCACAGCTG 60 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 3 3 3 81 16 20112541 20112559 TTCTTCTGCAAGGAGGTGG 60 20112602 20112707 CAAAGTCTAACGTGATGGGTC 59 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 2 2 2 80 5 135413326 135415566 TCAGCTAAGTCATCTACAGCC 59 135415605 135415626 ACGGCTTATTCCAAATCTACCT 60 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 1 2 2 84 10 74098623 74098647 CATATTTGGATCCACCTAATGAGAG 59 74097088 74098582 TGACCACTCCTGTCAATAGC 60 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018 1 1 2 191 1 48677742 48681126 CTCTTGAGTATCAAGCAGGTG 59 48681279 48683753 CATCCCTGCAATGTCACAG 59 NA Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 3 2 2 80 15 18544167 18544435 AAATTGAAAGGCAAGGGACC 59 18544477 18544496 ATACAGCTGCAGCTTCTAGG 60 NA Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 1 2 2 80 2 165522901 165523969 TTGTTAAGGAGCAAAGCCTG 59 165522840 165522860 AGGCTATTTCTGCAGTAACCA 60 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 3 2 2 90 10 45313499 45313617 CCTTGACCAGGAAGGAGAG 59 45313671 45313689 ATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Strada ENSRNOG00000008637 ENSRNOT00000055125,ENSRNOT00000011894 2 2 2 80 10 94364718 94364739 TCTCCAAACCAGAGATCATGAG 60 94364364 94364678 CAAACCCTTTGCCTATGACG 60 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071 1 1 2 80 3 44483887 44483905 GTCGATGGAGCAATGATCC 59 44467107 44483846 GGAATGAAGAGTTAGTGCTTCC 59 NA Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 3 1 1 73 1 220417139 220417158 GGTTTCAATCGAATCAGCCA 59 220417437 220417455 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435 3 1 2 91 7 27229245 27229654 CCCTCAAGGACAAGATCGA 59 27229172 27229190 TCCAGACCATCCATACTGG 58 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 1 2 2 80 3 71294225 71294243 TTGGAAACCCACATGAGTG 58 71291323 71294184 TCAATAACACCCAGCATATGTG 59 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 2 2 2 80 3 71294227 71294245 GCTTGGAAACCCACATGAG 59 71291325 71294185 AATAACACCCAGCATATGTGC 59 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 1 2 2 80 3 71293343 71293361 TTGGAAACCCACATGAGTG 58 71291323 71293302 TCAATAACACCCAGCATATGTG 59 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927 1 1 3 82 4 183344291 183346867 TAGAGCCCAAAGATGTGCC 60 183344227 183344246 TTTCCTCAATGCTGGATCCT 59 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287 3 1 2 87 20 27720965 27728772 AACTACAGGTTGGTGAAAGAC 58 27720898 27720918 ATAAGAAGTCATACGCAGTGG 58 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 2 2 2 80 5 160035690 160035709 ATGGGCTTTCTTCAAACGTG 60 160033905 160035649 CAAACACCACCTTTACCACAG 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000084004 3 1 3 81 10 12048912 12048932 TCATTCGTACGAGAAGCCA 59 12048975 12048995 TCATGGAATGTTCTGGAATCC 58 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 1 2 2 82 5 155666655 155666673 ATCTGGAGAAGTGTGGCTG 59 155666806 155666824 GATGTTGTCCGAGCATCCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000077748 1 1 2 94 8 50602410 50603526 GACACTTGGAGACATGGAC 58 50602334 50602352 TAAAGATGGCTGACACTGG 57 NA Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000077748 3 1 2 95 8 50602410 50603526 GACACTTGGAGACATGGAC 58 50602333 50602352 GTAAAGATGGCTGACACTGG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000079192,ENSRNOT00000084717,ENSRNOT00000044408,ENSRNOT00000019969,ENSRNOT00000087441 3 6 6 81 4 154560424 154560594 TGTGTATGCTCAGACCACG 60 154560637 154560657 TACTGTCTGCACCTTTAGAGC 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000087441 2 1 6 93 4 154706066 154706085 TGGGTTTAACAGCATTCACC 59 154706141 154706798 GACCTGAACAGTGGTTCTG 58 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209 2 1 2 109 19 38601555 38601574 ACTTCACCCAGGAAGAATGG 60 38601646 38601981 GGAGACTTGATACCCGAGC 60 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000028651 1 2 3 84 1 221893513 221893531 ACAGATGACCTTCTGGTGG 59 221893578 221906119 ACTCTCCTCCAGTACTAGGC 60 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000047118 1 1 3 104 16 3674814 3674835 AGGGACTCGAAACTAAAGTCTC 60 3674898 3674921 CGTTTCTTCGACTTCACTCAC 60 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000076176 3 1 3 80 X 70331066 70331197 CTCGACTTCCAAGATACAAGC 59 70331239 70331257 CTTGACCACTTTCCACAGC 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 2 3 3 80 10 84630212 84631884 GAGACCAACTTAACAGTTGCT 59 84630152 84630171 CCTTCTCTTCACTGAGAGGT 59 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 2 3 3 80 18 56899339 56899359 CGAAGACCTCTTCAATTTCTG 57 56899398 56900108 ATTCTACTGATCATCTGGTCAG 57 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000065931 1 1 2 91 19 26194710 26194728 CAATCCGGCTTTGGATGAC 59 26194780 26195472 GATTGAGAGCCTTAAGCATGAG 59 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000065931 2 1 2 98 19 26194782 26195474 CATGCTTAAGGCTCTCAATCTC 59 26195533 26195551 GAACAAAGCTTCCTCGGTG 59 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 3 2 2 81 8 70624061 70624522 CCATAAAGAGCAACGGGAG 58 70624566 70624585 AAATCGGAGTGGACAATGAC 58 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 3 2 4 82 17 72247455 72356850 TCAAGAAGAGGAGGAAGAGG 58 72356895 72356913 CATCTTCTTCCAAGGGCAC 59 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 1 3 3 82 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509312 49509330 TTCTTTGACCAGATGCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 3 2 2 80 4 155334277 155335887 CGAGGCCATGAAAGATGAG 58 155335931 155335949 AGTCGGAAGTAGTTGGAGC 59 NA Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066 1 1 2 60 X 73617339 73617358 GGACATGGATTCACCTTCAG 58 73617381 73617399 GAGACAAGAGGTTTCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076272 1 1 4 142 13 78431957 78443053 AAGCAGAAGAGGAACCTGG 59 78431833 78431851 CACAGTCCAGCATGTTCAG 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447 1 1 2 93 7 142147371 142147389 TATGTCTGTCAGGAGTCGT 57 142146931 142147317 CATGGTACACATTTGAATCTCC 58 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368 1 1 2 80 1 48530664 48531281 ACTGCTTGGAGAAATCTTCG 58 48530603 48530621 CATCTGACCCAAGGATTCG 58 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000015322 1 1 2 80 4 9997083 10002126 GCTAATGAGCATTACTTAGAGCC 60 10002162 10002184 GAAGAAGTCTTCACTCTTGAGTC 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632 2 1 2 80 7 117488986 117489004 TCCTCATCCAGTACAACGC 60 117489290 117489615 GGTTAGAAGACACAACCAGC 59 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274 1 1 2 80 5 173054160 173054181 GAGATCATCGAATGGAAATCAC 57 173054222 173056029 CATCCTCCTCTCCTCTGTC 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274 2 1 2 80 5 173066581 173066600 AAGAGGAAGAGGAGGAAGAG 58 173066642 173067077 CACTGACTTCTTCAGCAGAC 59 NA Rattus norvegicus 81 Fnbp1l ENSRNOG00000013798 ENSRNOT00000055669 2 1 2 80 2 226706303 226707586 AAAGAAGCCAAAGCCACAG 59 226706241 226706260 AGAAACTGGGACCCATTAGG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000090273 3 1 2 80 20 20464361 20464381 GAGTGATTCAAGCTCAGAGGA 60 20464419 20469658 GCTTCCTCTCCCTTTATAATCAC 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181 1 1 2 80 20 20274023 20274042 GAAAGATGACACCAAAGCGG 60 20274081 20274786 CTATTCACCACCATCTTTGACTC 59 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000080748 3 1 2 80 2 27286830 27290851 GCTGTGAACAATATGAACCG 58 27286769 27286789 ACTCAGTAAGAAATCCACTGC 58 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 1 2 2 80 10 13862085 13862103 AGTGAATGTCCCATCCGAC 60 13862147 13862247 AGCATCTCTGACACATCGT 59 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 3 2 2 80 10 13864736 13864848 GGCTACTGCTGGATAGTGG 60 13864891 13864910 TAAATTGGTGCACGATGTCC 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000015828 1 1 2 84 4 81249118 81249136 AAAGTACTGGACCGTCGTG 60 81249180 81252251 CCCAAGTATTATCAGCATCTGTG 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 1 2 2 80 11 83911082 83911213 CTGCAATTATCTTTGAGACTCC 57 83911023 83911043 TCAGGTATTTCTGAAGCAGTC 58 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 2 2 2 80 10 85944796 85944818 ATAGATAGTACTGACCGGAATCG 59 85943762 85944756 ATCCTGAAGTGCCTCATGG 60 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848 3 1 2 86 X 135342940 135342958 TTCAAGCAGAAACTGGTGC 59 135332463 135342890 ATGACACTGCACAACTGGA 60 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 1 2 2 80 1 31730601 31731454 ATATCCAGACATCAGAGATGACC 59 31731494 31731512 ATGGTCTGCTTCATGTCCC 60 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 3 2 2 80 2 235350413 235351813 TTCATCATCCAGGCCTGTC 60 235351855 235351875 CTTGTCTGTCTGATGATCCAC 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 3 2 2 82 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151311 104151331 GATTCTCCAAACTTCGCAGAG 59 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000041844 2 1 3 97 11 67642219 67642237 AAAGAACAAGATCCGGGTG 58 67642298 67644544 TAGGTTCAAGCTTCTTGCC 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082 2 1 7 80 X 70636782 70636802 AGGGATGATTGAGTCTAATCG 57 70639520 70642426 TCCTCTTGTCCTTTCAGGT 58 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000077790 3 1 4 80 2 57868682 57876551 TGGATTTAATCAGGTATGCACC 59 57868623 57868644 TCACACCCATATCTTCCATCTC 60 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 1 2 2 80 5 50061062 50065944 CTGCTCTTATTCTTGGCGT 58 50061000 50061021 TGACATTATTGTGAAGGGTCTC 58 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 1 2 2 80 10 105319450 105320988 ACTTGTCAAATGTGCTGAGG 59 105319389 105319408 GTGAACTCGACGTTGTAGTG 59 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879 1 1 2 119 1 222844721 222862240 ATACCAGAACCCAAGCCTG 59 222862323 222869435 TCCTGGGATTTCACTTGGG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 2 3 8 80 4 8194327 8194475 AATCAAGAGGGATATGACCGAC 60 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 2 3 4 86 2 250224121 250224140 AACATGATAGACCCACAGCT 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 3 3 4 119 2 250224153 250224173 GGTTTCACTACATCAATGGCA 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881 2 1 6 80 17 77211787 77211806 TATGGAGATCACAGGACAGG 58 77211849 77213272 CATCAAGGACTGCCTACCT 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342 3 2 6 80 17 77185138 77189004 GATCAGGATGACTGAAGGAGAG 60 77189045 77189063 ATGGAGTCTGTCCTTGTGG 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000024162 1 1 6 80 17 77185134 77189000 TGGAGATCAGTTACAGGAAGG 59 77189042 77189060 GAGTCTGTCCTTGTGGGTC 60 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000008976 2 1 3 80 13 48074238 48075036 ACATCAACAAAGGGATTCCT 57 48074177 48074198 ATTAGTTCTCCAATAGCCTGAG 58 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000027677 2 1 2 80 1 82099604 82099623 CAATGCCATTCTCATCCCTC 59 82097909 82099563 TCAGTTAAAGCTTGTGAGGAC 58 NA Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 2 1 1 62 7 123284469 123284488 TAACTACAAGCAGCTTCGGA 59 123283093 123283111 GAGATGCCTCTGTTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 2 2 3 84 2 196594325 196608508 GCTAACCCAGAAATGACATCAG 60 196608553 196608571 CTCCACCTTGAATCCCAGG 60 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119 3 1 2 80 11 82698818 82698839 CACATAGACTTCTATCCGAACG 59 82698878 82699151 TCGGATGAAATTCATAGCTCC 58 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000089750 2 1 2 83 18 44888804 44891047 TGCTAATGCCATTGACCTG 58 44891094 44891112 ATTGTGATGGTCGTGTCAG 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000083079 3 1 7 84 1 102929713 102929734 GTAACTCTGAAGTCACTGAACC 59 102929779 102930386 CTCATAGCCACTGCTTGTG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000014023 3 1 2 82 4 7707629 7707650 CTCCAGAATATCAAGGAATGCA 58 7707688 7722193 CTGTTAACTCTGTATCTCCATGTC 59 NA Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 1 2 2 80 6 26261342 26262444 GAGTACGAAAGGGAATATCGTC 59 26259814 26259834 CTCCTTCTGCTCATTACTCTG 58 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000003851 3 1 3 94 13 78929669 78934099 CTTTCAAGAGGTAATGGAGAGTG 59 78929597 78929615 CACTCCGAACATTGAGCTC 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000023090 2 1 2 80 1 188096856 188101168 CGTACATCCAGTTGGAACC 58 188096205 188096224 GTTGACAAGTCCATCCACAC 59 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905 3 1 2 110 2 251024317 251024335 AAAGTTGGAAGAAGCAGCC 59 251024407 251027842 TTTCCATCAACCTTCTCTAGC 58 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000085655 1 1 3 80 18 63024200 63029319 ACAAGACGATCATCAGAAAGG 58 63029360 63029379 TTTCTGTCACAAGATCTGCA 58 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 3 2 3 80 9 10467473 10470829 CTTAAGAAGGCCATTGAAGAGG 59 10467414 10467434 CTTAGGCATCTTCTTGTTGCC 60 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000088884 1 1 2 94 13 90063457 90063476 TGACACAATCCCTTACACAG 58 90061289 90062589 GACTCTTCACCACTTTGGG 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000084595 2 1 3 80 14 114536201 114536514 CATCTAGCTATGTTACAAGAACGG 60 114536144 114536164 AACTGTATCTACACGCTCCTG 60 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000077340 2 1 2 92 1 53536313 53539502 GGGAGAACATTGTACATACGG 59 53539556 53539574 TTGAGGACTTCCAGAAGGC 59 NA Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000013546 3 1 3 81 3 11234894 11234912 GAAGTCCTGACCAAGAAGC 58 11234957 11235410 CTTTGACAGGTACCTGAGC 58 NA Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 2 2 2 80 1 78077488 78078072 TCTAATCGTACAGGGCAGG 59 78078115 78078134 CACATGTGGTTGAGTCTCTG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 2 1 1 60 15 23604178 23604199 CTGTGCTTTATCTTCTCCAGTC 59 23603589 23603607 CAGCGTACATCATCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074378 1 1 3 80 5 159093250 159095232 ATCAGCCCGGTATACATGC 60 159093111 159093131 AGTGACAATCTGGTGAGTCAG 60 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481 1 1 2 80 6 26573756 26574822 TGCCATCTACAAGGTCCAG 59 26574866 26574884 CACTGACCACACTCAGAGG 60 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000067886 1 1 4 80 16 23758992 23759011 CCAGACAAGAAGGTCAAAGC 59 23759051 23759399 TTGACCTAAACTCTCAAAGTCG 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799 2 1 2 81 X 71448769 71448787 AAACAAGCTCTCAGCTGTC 58 71448830 71449632 TATGCGTACATAACCAGTAGC 58 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000068682 2 1 2 80 14 19416027 19416047 GTCTGATACTTCCAAAGCACC 59 19416089 19424569 GACTGTGCTGGAGACTCTG 60 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000077857 2 1 2 111 13 48821809 48821827 ACAGTTTCCTCGTCTGTGG 60 48820086 48821738 TCTTGGGTAAGAACTGATGAGAG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 1 2 2 80 1 220929920 220931398 CAAGATGAAGGTGACCTTGG 59 220929859 220929878 TGGTAGGTGAAGGACTTCTG 59 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 3 1 1 95 1 257080060 257080078 CCATGCTGTAGAGATCAGC 58 257081922 257081940 TTGGGACCTATGAACCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948 2 1 2 80 4 21893848 21893867 TGGCTTCGAAGTAAATGGTG 59 21893910 21897307 GGAGTCTGTTGAAGCAGGA 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000077784 3 1 7 80 5 165977091 165980684 TTCATCGAGAAACTAGTACCCT 59 165977032 165977051 TGTCGTATCCCGGTATTCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000086226 2 1 7 118 5 166060254 166060278 GATTGATATGAAACAGGAGATGGAG 60 166053990 166060055 TATCAGAATCCGCGTCCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000089099 1 2 7 93 5 166072413 166075276 GGAAGTGGAGGCAAATATCTG 59 166072340 166072358 CTGTGGAGAAATTGCCAGG 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902 1 1 2 80 6 124395539 124398050 GCTTCTTTGGAGATGCAGG 59 124389393 124389411 GTGGTCTGTAGGTGACAGG 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 2 2 2 80 1 13287073 13287093 CAGTTCCCATTCGTATGACTC 59 13287134 13288139 GGTTAGTATGATCACCGCTG 58 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000005858 1 1 2 80 6 44240076 44240743 GTCACTGGTTTGCAGTATAGTG 59 44240781 44240802 CAGTAGAAGATGCACTATGTCG 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185 2 1 2 82 5 163026195 163026213 AAGGAAACAGAGTCAGCCA 59 163024018 163026149 ACAAGAGGGAGGCTTTGTC 60 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000066191 1 1 2 152 5 27327120 27386169 TGATCGTACCGAGAAGCAC 60 27386284 27388319 GTGCCATTCGTTAATGTCGT 59 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000032518 1 1 2 119 11 71005259 71007221 GAGCATTGTGAAGCTCCAG 59 71007304 71007322 TCCTTCTCCTTGCCTTTCG 60 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000032518 2 1 2 123 11 71005259 71007221 GAGCATTGTGAAGCTCCAG 59 71007308 71007326 CTTGTCCTTCTCCTTGCCT 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000051075 2 1 3 81 7 71065582 71069218 AGTTGGGAACACAGGACTC 59 71069261 71069281 TTTGTTCATCCACTCATTGGG 59 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 3 2 2 88 6 126710723 126710746 GTGCTAATGCATCTAACTATCCTC 59 126708770 126710681 GGAAGATGTTCCTATGAAAGTCTG 59 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 3 2 2 80 19 55453586 55453606 GAAGAGTTTCATTCCAAGCTC 57 55449868 55453546 AAGATTAGCCTTCAGAAAGGG 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000087991 1 1 5 80 14 22260831 22267860 CATTAATGAGCCTTCCTATAAGGAG 59 22267894 22267916 GAATGGAATACACTAGAAGGCTG 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000079845 2 1 2 80 1 15716623 15720737 AGCATTCACAGTGGAGATCC 60 15720778 15720798 CTTGCTAATGACAGGATCGAC 59 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538 2 1 2 82 4 177033411 177033429 CAGGGACAACCCTAACCTC 59 177026151 177033365 AGCCATACACAACGTCTCC 60 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 1 2 2 98 3 3657612 3657630 GTGTCTCAAGTGCAGTGAC 59 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 2 2 2 98 3 3657612 3657630 GTGTCTCAAGTGCAGTGAC 59 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000067639 3 1 2 82 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658847 6658867 TCGAAGAGCTGATCCACAG 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000091677 2 1 8 139 6 64808340 64810644 TCTCTGAAGGTGATTTCAGC 58 64810746 64812926 GGAGTAGGTAGGCCTTCTG 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000051908 1 1 8 80 6 64838572 64838591 CACAAACATCAGTGGGATCG 59 64838634 64852701 TTGCCATTGCCTTCTTACC 58 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000051908 2 1 8 81 6 64838572 64838591 CACAAACATCAGTGGGATCG 59 64838634 64852702 CTTGCCATTGCCTTCTTACC 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000078583,ENSRNOT00000091677 3 2 8 82 6 64794400 64794463 CTATGACGGCATGGTACAG 58 64794508 64794527 TTACAATATTCTCCCGTGGG 57 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 2 2 8 80 6 64838568 64838587 TATGCACAAACATCAGTGGG 59 64838629 64839962 TGGAAGAATACCAGCTTCGT 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000089966 1 1 5 113 1 15839161 15844911 AGTGTCAGCTTACCCACAG 59 15844987 15845006 TGTTCTGACTTAGAGCAGGG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292 3 1 2 80 11 70008459 70009154 ATTTCATCCAGGAAGTGGC 58 70009198 70009216 GTAGCAGTACTGTGTCTCC 57 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000000139 1 1 2 83 5 147866172 147867574 ATGGTGTCAGAGACCATGG 59 147866107 147866125 TTCCTCAGGGTTTAAGGCA 59 NA Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 3 1 1 80 10 109278974 109278992 CCTGAGTAAGGACCTGTGC 60 109280647 109280665 CCCATCATGGTCTTCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 3 2 2 105 10 15324317 15324335 CTCTGTCTTCAGGGACCAC 59 15324129 15324248 CAATGCACTCAGGAACCAG 59 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 2 3 3 81 12 39693763 39693781 CACCAAGGAGAGCTATGAC 57 39691573 39693720 ATTCAGACTCTCATCGAAGTC 57 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 1 2 7 80 2 186117954 186122499 CGTTATCATGAACACGGCTC 60 186117893 186117912 CTGGATGATTTGCTGCTGTC 60 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000002309 1 1 2 80 5 79235718 79236168 GATCGTCACAATTCAGCGAG 60 79235657 79235676 CCGTTCACTTCCAGAATCAC 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889 3 1 2 80 3 113129989 113130010 GCAGATTGTAGAATTGGTGC 58 113129928 113129946 GGACATTGCTTCTGTACCC 58 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000008160 2 1 2 83 7 142645202 142650185 CAAACACGCTAGTGCAGAG 59 142650231 142650250 CAGATGAGGAAAGTGTTGGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000008659 3 1 2 88 10 86870924 86876156 CAAACCACTCCATCGAGAC 58 86876208 86876226 CTTGTAGATTCGAGGCAGG 58 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000051371 3 1 4 81 16 6155844 6161264 AGCCCAAGCACTATTTCAC 58 6155781 6155802 GTTATAGCAATATCAACGACGC 58 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 1 1 1 71 4 10797275 10797293 GATATGCCAAAGTCACCCT 57 10802845 10802864 TCGAGGTAGATACTGAAGGT 57 NA DesignNoJunction Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 2 1 1 60 17 70045354 70045372 AATGACATGATCCGTGTGG 58 70041960 70041978 TTCCTGATTCTTCCCAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 3 1 1 122 1 162419507 162419525 GAAACCTACTCAAGGAGCC 58 162423282 162423300 GATGTTTCATCAGGGTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748 1 1 3 80 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935190 154936957 GTATTAAGAGCATAATCCCTCAGG 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060253 1 1 10 80 15 32828416 32828437 ATCACAGTGTATCTTCTAGTGG 57 32828477 32852784 CTGTGACATCAGGTAGAACG 58 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848 3 1 2 86 1 140811740 140818274 CGCTGCAGACATTGATGAG 59 140818321 140818342 CATAAGCATGTGAAAGTGTCCA 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 1 3 6 95 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000003697 3 1 2 101 10 48038519 48038539 CCAATTCATCATGTATGGAGC 57 48035200 48037381 CTCGTGTTTCTCTGTTAGGT 57 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 1 2 2 80 15 2639716 2639734 CATCAGGTACCAACTGCAC 59 2636608 2639675 TGACCTTTGCAGAAATAGAAGC 59 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 2 2 2 80 13 82362162 82362184 CATTGTCCTCATTGATCTACGTG 60 82362583 82362704 TTTGGCAGCTACTAGCAGG 60 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796 3 1 2 80 1 241021915 241021936 TCTTGTGGCTGAGAAATAACAG 59 241010360 241021875 TCTTATTGTCACGAACCGTG 58 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802 3 1 2 82 5 21291725 21291743 ACTATTCCACCTTGCAGTG 58 21277899 21291681 AATTCTTCTATCTGCAGCTGG 58 NA Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 1 1 1 60 7 7534339 7534358 TTCACCAGTGTTTCCATTCC 58 7534296 7534316 AGGAAATGGTCTTGACTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391 2 1 2 85 13 48446461 48446577 GATGGAGAATATGCGGTGG 58 48446626 48446644 CTGAGGGTGTATGAAACCC 58 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725 1 1 2 80 4 100423165 100424704 GCTTTGTCCTCAAAGATTTGGA 60 100423106 100423124 GGGCTAGGTAGTTGTCCAG 59 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000082669 3 1 2 80 17 76391275 76391294 GTGACAGTGACCATCAATGG 59 76389531 76389672 CACTTCCACAAACTCTCCG 59 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 2 1 1 60 5 106952427 106952446 CTCAATGACCTCAAAGCCTG 59 106952469 106952487 GAGTCAAGGGAGGTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 3 2 2 80 7 120214813 120216379 GATGTCACCAAGCTCTCAG 58 120216423 120216441 CCCTATCTTCAGGGAGCTC 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000010739 1 1 2 89 6 126645256 126645274 ATTTCCAGGAGATGGTGTG 57 126645327 126647033 CAGGTAATCTGGTGACTGC 58 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601 1 1 2 80 6 126645991 126647025 AAACACAGCATGTCACCAG 59 126647066 126647087 TAACATCTTGATCTCCCATCCC 60 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000010455 2 1 2 111 2 189889990 189891970 GAATCGGTGGTAGAGGTCG 60 189889897 189889915 TTGGTCAATACAGGGCGAG 60 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 3 2 2 91 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958569 94958587 GAGTCCTCACAAGTCCCAG 59 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000078532 1 1 2 81 17 67899596 67899615 GTGATGAGTTGACCAGACAC 59 67899073 67899552 CTGGAGAAACACCTGTCAC 58 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000085211 1 1 3 90 13 103253007 103253026 CGTACTGGTGCATATCAAGG 59 103245361 103246022 GTTTGGCTGTGAACAAGGT 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 2 2 2 80 8 112661832 112670854 CTCTATGAGCATGAAGTCGT 57 112670897 112670915 TTTCAAGGTCAGTAAGCGG 58 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000080961 2 1 5 86 9 81662725 81662903 ATGAGGAAGCGATGACAGG 60 81662953 81662971 CTTGCTCGCTTTACTCTGG 59 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000000683 3 1 2 83 20 30791687 30794219 ATATCCAAGATATCGCTGGC 57 30794264 30794283 TTAAGAATGAGGGCTGAGTC 57 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394 2 1 2 85 20 30791691 30794131 CCAAGGTACAGAAGAGGAGG 59 30794181 30794199 GAGTGAGATCTGTGGGCTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 1 7 12 92 20 3352065 3352083 CTAAAGGACACCTCAGCCC 60 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000079738,ENSRNOT00000080419 2 5 12 91 20 3352687 3352705 CAACTTGCCATTGACCGAC 60 3352760 3358166 AAGTTGTTCACCTGTGGGA 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000079738,ENSRNOT00000080419 3 5 12 93 20 3352684 3352702 CACCAACTTGCCATTGACC 60 3352759 3358165 AGTTGTTCACCTGTGGGAC 60 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734 3 1 2 85 4 123489645 123502741 TTCTCAACTATTTCCAGCACTG 59 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000091595 3 1 3 80 11 84399537 84425174 CAGATCAGTTTGGAATGCCA 59 84425216 84425235 AGAATGCACAGAGATGTCCA 59 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 1 2 2 80 X 71615838 71616846 TACCTTGAGGTCAGTGAACG 60 71615777 71615795 ATCGTAGGGAGATGTGCTG 59 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000042372 2 1 2 80 10 104747518 104747540 CATGAGGACTATAACTTCCTCAC 58 104747458 104747478 CCTCATCTTTCCCATGGTG 58 NA Rattus norvegicus 81 Tmem251 ENSRNOG00000008101 ENSRNOT00000010672 3 1 1 74 6 126623039 126623058 GAACTGAGTGACTCTTGCAC 59 126623484 126623502 CATTCTCCATGCTCTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000088121 2 1 2 97 1 190229542 190229914 ATGTCCTACTCGTTTGGCT 59 190229970 190229993 GGTCCAACATTCCATAGTATTCAG 59 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000090668 1 1 3 80 13 85378360 85378380 GATCATTCCTAGAGGTGCAG 58 85377157 85377177 TTCAGGATGTCCTGTATATGC 57 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 2 2 2 184 1 56242593 56289144 GTTCTTGAGAGTCGATCAAGAC 59 56289289 56299801 ACCTGGACACATCTTTGCA 60 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000011592 2 1 2 84 X 1712900 1713409 CTCTGCACCAGAGATTGTG 58 1712834 1712852 CTCATCTGAGGATGTGGCT 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443 3 1 2 81 1 227496069 227498694 GATCCTTCTGTGCACTGAG 58 227496006 227496025 TAGGTGACGAAGAAGAGACC 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000012137 1 1 3 99 4 147333202 147351550 GAGCACTTCACAAGAAATTACC 58 147351610 147351628 GTGGTCATCCATCACAGAG 58 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 2 2 3 86 10 105085653 105085672 ACCTGGGACCTATTACTTCC 58 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000085877 3 1 2 110 20 31577023 31577041 CTCCAGGATGTAACTGCCC 60 31523047 31526616 GTTGACCTTTGACACCCAC 59 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709 2 1 2 94 13 113710385 113711082 AGAAAGGCTGGGTGAAGAC 60 113711140 113711158 CCTTTCCCTGAGTCTCAGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000078744 2 1 3 104 10 86383080 86383098 CACTGTACCTTGGGACCAG 60 86383475 86383660 TTACAGACCAAGCCAGACG 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 3 3 3 80 10 109712171 109712192 TTTGTTTGAGAAGTGGAAGCTC 60 109712233 109713151 CAGACCAGCTCAGTAGGTG 60 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000058479 1 1 5 80 11 81426444 81426464 ATGCTAACGTGTACATGAGAC 58 81424320 81426404 TCATATGTGACATGTCTAGCG 58 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000058479 3 1 5 80 11 81426444 81426465 AATGCTAACGTGTACATGAGAC 59 81424321 81426405 CATATGTGACATGTCTAGCGC 59 NA Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 3 2 2 80 5 169553005 169553025 GATGCTACTTCAGAAGATGCT 58 169553066 169554076 AACATCTTGGTCATCTGGGA 59 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000090183 1 1 3 149 14 34760888 34760907 CTGGGAAAGACTATGTTGGG 58 34761018 34786348 CTCACAGTTCTTCAGAAGCT 58 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 3 2 2 80 1 78040220 78044909 ATGACGAGACCATGAAGACTC 60 78044950 78044969 GCTCGATGAAGAAGTTGTCC 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000013961 3 2 8 80 6 128050871 128052895 CTATTTAAAGGCAAGATGCAGC 59 128052935 128052954 AGGGATCAAAGAGTCCTTCC 59 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 1 2 2 80 1 191636395 191638321 GTAGAAAGGGCATTAAAGTCCTG 60 191636337 191636355 TTTGGTCTCCTTGTCCCAC 60 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000007371 3 1 2 89 6 33177019 33177377 TCTGGGCTCAAGATGAAGTC 60 33178432 33178450 TGTACACGTACTTCCGGAG 59 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097 1 1 2 99 15 57133806 57133826 TTTGGAGATCAGAGAAAGCAG 58 57133408 57133745 CAAGCTGCTAGCCTTTCTC 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000022731 1 1 2 107 2 208623055 208623157 TGCTTTACAGTGGAAGGTG 58 208622966 208622985 AGAGGGAGATAAGTGTTCCC 58 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000022731 2 1 2 108 2 208623056 208623158 CTGCTTTACAGTGGAAGGT 57 208622966 208622985 AGAGGGAGATAAGTGTTCCC 58 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000007710 2 1 2 82 5 86406716 86406734 TCAGTCCCTCCAAATGGAG 59 86403567 86406673 GACATTTGTTGACATCTTGCTG 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 3 2 2 80 2 196157729 196158561 TCAATTCCAAGGATAAGGCTC 58 196158601 196158621 CAGGAACATTAGTTGTGTCGA 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000019265 2 4 9 159 9 81518591 81527537 GGAAACAAACCAGAAGCTG 57 81529665 81532992 TCTTTAGTAACTCATCAGCTCC 57 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 2 2 2 103 7 125265537 125265555 GGACAAGCTCAACCTTGTG 59 125266017 125270585 CATCTGCAAACTGGGTCTC 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000003021 2 1 3 81 14 34561654 34562177 TTCTCGGATACAAGCAGGC 60 34561591 34561611 GAGTCTCCGAAGACTATGGAC 60 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000081244 2 1 2 86 4 86629718 86629739 GAAGAATTCGAGAGCAACTCTC 59 86606565 86629671 ATATTTCCTCAGCCCACGG 60 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530 2 1 2 101 17 90701056 90701079 CCAGATCTTACTTCTTTGACAACC 60 90701139 90745596 TTCCACCATTGGACCTTCC 60 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986,ENSRNOT00000057469 2 2 2 86 15 108404136 108404154 GAGGATGGAGCAGCTAGAC 59 108404204 108417990 TTGATCATTCCTCCCTGCT 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645 3 1 2 88 1 267437791 267438618 GTCAAGGACCTAAAGACCGT 60 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 2 1 1 60 3 165692606 165692624 CCGCCACTTAAGAATCCAC 59 165685405 165685423 GCATTTGTCACAGAACTCG 57 NA DesignNoJunction Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 1 2 2 80 4 6297916 6298024 CCTTTGGGAAGAACAATCGG 59 6297855 6297873 AGCCCTTCTGATCCATCTG 59 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 3 2 2 82 2 198007495 198007514 AGATGAGGGCTTAGCATCAC 60 198007557 198007805 AGGACAGACCAGAAACATAGG 59 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 1 2 2 97 7 129860683 129862039 CACTGACTTTGATGGCACC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253 1 1 2 80 2 259591949 259591967 GATCTACGTGACCACGGAG 60 259382755 259591906 GACTGGACTCTGTCTTTCCC 60 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017 1 1 2 80 13 109442305 109442325 GGAAGATGACTATGAAGCAGC 59 109403591 109442264 CTTAGTGCTCCTTGTACACC 58 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000085395 2 1 2 85 1 170269960 170270651 TTTCCTACCTCATGGGTCC 58 170270700 170270718 AGATGAGTCCATAGGCCAC 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 3 2 2 81 5 124021424 124143313 GGAAGAAAGGTCAGGATCG 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 1 2 2 80 1 72891170 72891612 GAACAGGCAGAAGATGAGGA 60 72894940 72894958 CAAAGGAGGAACCACAGGA 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 1 2 2 80 8 5686540 5686559 TGGACCAGGGATTAATGGAG 59 5686600 5688297 AGGAATAGGTTGGTACCTGTG 59 NA Rattus norvegicus 81 Abhd11 ENSRNOG00000018910 ENSRNOT00000025560 1 1 1 60 12 24723514 24723532 AGCATGGGAGGAAAGACAG 59 24723310 24723328 GTCGTTCCACAACATCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 1 4 4 94 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503412 105503430 GATTCATGGGTGACAGCTG 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000078956 3 1 2 80 4 100765964 100767014 GGATCCTATAGCTGCAGAGC 60 100765903 100765921 GGGCCTGAAGAGTTAAGCT 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 1 2 2 80 4 157483388 157483589 CTGACTACTTAGCTGAAGCC 58 157483327 157483345 TGACAACTGACAGATGTCG 58 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296 2 1 2 88 16 7068516 7068534 AAGTATCGAGACACGCTGG 60 7068586 7070213 CCTGGTGTGATACCTGGAG 59 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911 3 1 2 94 7 118715144 118715163 ACCCTCAGGACAAGAAAGAG 59 118716610 118717565 GGCATCTTCCTCTTTCGTG 59 NA Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 2 2 2 81 10 88264832 88264850 GTCCTAATCCACTGCCCAG 60 88264443 88264788 TCCCGTTCTTTCTCTTCCAG 60 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210,ENSRNOT00000089093 3 2 2 80 6 28331667 28332014 CCAGAACTGTAAGAACTGCT 58 28332057 28332075 CAGCAGATGGTACAGTAGG 57 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 1 2 2 80 7 34636063 34636082 CTGCACAATAAGAGTGAGCC 59 34636123 34641549 TTCACATTTACCTGAGTGTCG 58 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234 1 1 2 93 7 126134123 126134141 GACCTGCTTCAACATCCAG 59 126134198 126153853 CTTCTCTTGGCGAAAGGTG 59 NA Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 2 1 1 92 1 89409658 89409676 AACTTCAGGTTCACGGAGG 60 89416236 89416254 GTTGTCGTTGACTTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 3 1 1 93 1 89409657 89409676 TAACTTCAGGTTCACGGAGG 60 89416236 89416254 GTTGTCGTTGACTTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 3 2 2 125 18 2425169 2425191 GGGCTTTATATGAAACTCCATGG 60 2426447 2426552 AACAGAGCTGTTACCGGAG 59 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 3 2 2 82 10 88466148 88467733 TGGATGAAGATCTCATCAAAGG 58 88467775 88467794 GTCCAGGTAGTTGATTCCAG 58 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 1 2 2 80 6 135282102 135283469 CCTTCTGGTGAAGGTTGAG 58 135283511 135283531 TCATACAGCTGTTCAAACTCC 58 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000085126 3 1 2 85 15 3461707 3461725 TAATCAGCCGGTCAACCAG 60 3459794 3461660 TGTCATTGCCCTTACTAGACC 60 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 3 2 3 103 10 88413603 88418144 TCCCTGCAAGGAAAGAGTG 60 88413518 88413536 ACGTAGTCAAAGTCCAGCA 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 2 2 3 85 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638480 ACAATCATTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880 3 1 2 171 1 253242740 253247462 GCACTCAAGACATCAAGTAAGG 59 253247591 253250175 GTATAAGCCCTTTCTTTGCTGG 60 NA Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 2 2 2 80 4 88713888 88713907 GATCTGCGACTTTGTCAACC 60 88713949 88717202 GTACCGTACTGAATTGCCTG 59 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 2 2 2 80 6 93609533 93618142 CTTCTGACATTGTCCCAGG 58 93618185 93618204 TCATGTCTGAGTTCACAGGA 58 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 1 1 1 60 14 44613098 44613118 TTAACAGCTGTCTACACTGTG 58 44548523 44548542 TATGCCACACTTTCGAATGC 59 NA DesignNoJunction Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 1 2 2 91 5 127165230 127213365 ACAAGTGCATGTTCGAAGG 59 127213420 127213438 GTATGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296 1 1 2 80 6 64274497 64281427 GGAATGATCTTCATCAGGATGG 59 64281465 64281486 GCCAGATACATTTACATTCGTG 58 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 3 1 1 91 20 3793018 3793036 CCTCAGATACCTGGAGCTC 59 3791978 3791996 CATCACCTTCAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000029634 3 2 3 80 8 13875649 13875669 ACCACATCTAGATCTTGACCT 58 13875195 13875609 GAAGATTCTGAGTTCTGCTGG 59 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725 2 1 2 94 6 96848893 96848911 TAAGAAAGAGCCCGATGCC 60 96848968 96849572 CTTCAGTTTCCGTGTCATCG 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 1 3 3 80 1 82558669 82563480 GAAGCCACCTTGAACAGTC 59 82558607 82558626 CACCTTATGCCGATCTACCA 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000080840 1 3 4 83 1 81796497 81796515 AAGACCCTTCCTGTCTCAG 58 81796562 81796899 CATGAAAGGCCTGTCTGAG 58 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 2 1 1 69 X 70428341 70428359 CTGTCTGATGCCATCAGTC 58 70428053 70428071 CAAGGATTCTGCACTGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 2 2 2 80 9 100961270 100961291 TTTGATGAAGTCATCCTGTCCA 60 100961331 100963320 CTGGCAAACCAGAATTCCAG 60 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 2 2 3 80 20 3992060 3992449 GGAATGCAGGCTATACTATCTG 58 3992488 3992508 AGCATCATGTTGGAAAGTAGC 59 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000082891 2 1 2 80 18 11829158 11829179 GGTGGACAATTACAGATACACC 59 11828593 11829120 TGTCCTCTAATGGTTTCCTCAC 60 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 3 2 2 80 7 45372138 45372158 CATTGCCTCTGTTAATCGTGG 60 45372194 45379109 GGTCTTCTAGAAACTTATCTATGCC 59 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000032454 2 1 2 80 18 6030848 6033916 CCCTGATGGTCATAATGATTACG 59 6030790 6030808 GAGGACTCCTCATAAGGCC 59 NA Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 2 2 2 80 8 117592553 117592571 GCATGAAGTGTCATCAGCA 59 117592612 117598495 CCAGCAAGATGAATTTGTACTG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 2 2 3 80 2 250763782 250765225 GTCGGATATGACAGGAGGG 59 250763720 250763739 GAGGAAATCCCACTGAAAGC 59 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 1 1 1 60 4 98731701 98731719 TACTCCAGAGTCACACCAC 58 98728683 98728701 ACTCTTTGCTTTGGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018452,ENSRNOT00000018272 1 2 3 80 1 231398260 231398280 GTTTGTAAGCACTGGAAAGGA 59 231396282 231398221 GATTCTTTGGACTGGAAGATGC 60 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000088821 3 1 2 94 11 84044109 84044670 TATCAAGAGTCAGCATCAGAC 57 84044035 84044053 GATACTTGATGCCTTCCCG 58 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769 2 1 2 92 2 198829588 198829606 TACATGAGTACCCACCTGC 59 198829821 198836317 TACGATGAACCTGACTCTCAG 59 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000016133 1 1 2 80 10 66304361 66305345 ATGAGAGTGGTGACTACTGG 59 66305388 66305406 TGTCCAGGAAGTAGGTGAG 58 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 2 2 2 80 4 153929433 153929453 TCTCTTCTACCTGTTCAGCTC 59 153929495 153930270 ACGCAATGTTCTGTGTTCC 59 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000091557 2 1 3 80 18 15494226 15494554 TCATGCTCTGCAATATTGGG 58 15494594 15494615 TCACTTGTATTATTGCCTTCGG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 1 5 5 80 6 80269530 80270982 AAGCACATGATAATTGGCTGG 59 80271024 80271042 GTCTGTTGTGGGCATTCTC 59 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404 3 1 2 96 1 205013818 205028846 CACCAGAACCAAGTATCCG 58 205013740 205013758 ATTTCCACAGTGCAGTCTC 58 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000085887,ENSRNOT00000009904 3 2 3 80 4 162017586 162017605 GGAAGGGAAGTCTAGCTGAC 60 162017183 162017547 GTAGGAATCTCAGTTCTTCTTGG 59 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649 1 1 2 115 4 57539328 57540439 CATTGATGGCGTTTCAGGT 59 57521959 57521978 TAGGATAGGCCAGCAATTGG 60 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984 2 1 2 80 13 67600170 67600857 ACACAAAGAGTGGACTTACAC 58 67600110 67600129 CGTTGCCTTTAACTTGTCCA 59 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000007887 2 1 2 85 6 72489146 72496357 GAATACTTCAGCAGAGTGAGTG 59 72502369 72502390 CCATTTAACACCATCTCATCCA 59 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026 1 1 3 81 2 199870838 199870856 CATGGAGCAGTTCATCGTG 59 199869703 199870548 GGAATATGGCTCTAAATTAGTCCG 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 3 1 3 82 2 261399425 261399444 CTTCAGTGCCTAGAAAGCCT 60 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 1 1 1 60 1 13171424 13171443 TGGTGGAGGAAATTCATCGT 60 13166112 13166131 AACTTCACACTCAGTTTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544 3 1 3 82 13 71970979 71970997 TACTTCCGAGACCTCTGGA 59 71970912 71970933 AAAGCATCTACCGCCAGAG 60 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000015426 3 1 2 99 4 9197713 9197731 AGCCATTTCCATTGGACAG 58 9197794 9215584 ACTAGGGAGGTAATCTGGG 57 NA Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 3 2 2 81 9 121712377 121712397 TGGTCTACGGGATAATAATGC 58 121710267 121712334 TCTTCTGGTCTGATCCCAG 58 NA Rattus norvegicus 81 Nudt17 ENSRNOG00000037217 ENSRNOT00000031484,ENSRNOT00000089831 2 2 2 80 2 198833647 198833831 GACTTCCAATCCAGAGACC 57 198833585 198833604 CCACACCTCTATTTGTGGAG 58 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000080701 3 1 2 81 5 126863506 126864623 GAGTTTAGTCCAGGCTACAC 58 126864667 126864685 GGCCAGAATCACTTCTGTC 58 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 1 2 2 89 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187097 184187115 ATAGTTCTGCACCAGTGCA 59 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054 2 1 2 80 6 101614785 101636740 ATAAACGGATTCCAGACTCC 57 101636783 101636801 AAGGAGTAGTGCTAAGGGA 57 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228 3 1 2 85 8 117812406 117827472 AAGTTTCAACTCTTGCGATGAC 60 117827516 117827536 TCTCCATACCAGTCTATGGGA 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000048980 1 1 2 102 X 10526432 10527720 ATATCAGCAGCCCTATACAGG 59 10526350 10526368 GGACACTTCTTCACTGCCT 60 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000073255 2 1 3 157 1 189985053 189986399 AGCATCCTGAATACCAGCTC 60 189986819 189986840 GTCACTGTGTTGAAAGACTCTC 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000087595 3 1 5 88 9 97928307 97928326 GAGATTCTGGTATGGAGGCT 59 97927816 97928257 GAAGCAAAGCAGGACTACAC 59 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 1 2 2 60 7 144266500 144266518 GGGAGTCTCATCATTGGCT 59 144264437 144264456 CATAGGAGAAGAGTTGCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 2 4 4 106 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831505 215831524 CACAGTATGTCTCCAGGAGG 59 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692 3 1 2 105 5 129287218 129287237 TCAAACTCCTAGACTCTGCA 58 129287728 129287903 ATTCTTGTGCAATCCCACTG 59 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242 1 1 2 82 12 31353729 31353747 TCATGAAGCTGGAGACCAG 59 31353792 31355915 CATTTCACCCTGAGTCTCGA 60 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221 3 1 2 82 7 11685444 11685462 GGATCCAGACATTTCTGCG 59 11684996 11685400 AGTTTGGTGTGGTTGAAACAG 60 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 2 2 2 80 1 228745422 228745440 GAAAGCTGTCGAAGTGTGG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 2 2 2 80 7 122941226 122941426 TTGTGACAAAGCCCAATGG 59 122941164 122941182 TCTAGATGCTGTACAGCGT 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 1 2 2 80 10 15196440 15196460 ACGTACTCCGAATTTATGCAG 59 15196650 15196743 TCTGAACTTCGAGTTGTCTG 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789 2 1 2 80 10 15196967 15197075 GAATCTCTAGGCAATGACACC 59 15197116 15197135 ACGGTAATGTTGGAAGAGTG 58 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 3 2 2 80 16 39921444 39928575 TACATACATGCACTGAGGCT 59 39928618 39928636 ACTGTCTCCTGATAGCCAG 58 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240 3 1 2 82 X 128613778 128613796 TTACGGCCTGAAGATAGCT 58 128613841 128616960 CCACGCTGATTGTAATCCAG 59 NA Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599 3 1 2 84 13 53021769 53021787 AGATCAAGGGCCATGACAG 60 53021835 53022865 TTCACTGTCAGGTCACTGG 59 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 3 2 2 119 7 142459198 142459216 TCATGGACCTCTGCTTCTC 59 142459299 142461326 ACATCTTCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 2 2 2 121 7 142459198 142459216 TCATGGACCTCTGCTTCTC 59 142459301 142461325 CATCTTCTCAGCCTCCTCC 59 NA Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 3 1 1 85 6 140980171 140980189 AGTTGTTGCTAAACTGGGT 57 140979980 140979998 CAAACCTCCTCCATGTACC 58 NA DesignNoJunction Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036283 1 1 8 80 1 226468244 226475589 TCAACTTGTCCAAGGAAGG 57 226475631 226475651 GGATATTGGCAAAGTCATCCT 58 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 3 2 2 80 10 104533424 104533444 TGCCAAACACAACATTATCCC 60 104533481 104533789 GGGAAATATTTATGGAGCTTCTCG 60 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088168 3 1 6 80 1 41554561 41561428 TTTCTCGGAAAGGAATCAAGG 58 41561470 41561488 AATCGACTTGACGTAGCCA 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 1 3 4 80 17 34831306 34831324 GTCTCTGAAGAGCTGAGCC 60 34831368 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206 3 1 3 134 5 167983329 167992640 AAATGATGAACGGCAGCTG 59 167983213 167983234 GGCTTGCTGTAATATCCTTGAG 59 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000007259 1 1 2 80 6 42857733 42857753 GCTGCTTCTACTTTCAATGGG 60 42857795 42858297 TTGCTTCATGAGTTGCCAC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 3 2 2 80 7 130124241 130124453 TGGAAATGACTACATCGACCA 59 130124181 130124202 GATATCTTTGCCAGAACCTCAG 59 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 2 2 2 80 18 24749722 24750020 GATCACAGACAAGGTCATCAG 59 24749662 24749682 TTCTTCACCCAGTCAGATACC 59 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 1 2 2 80 1 48029792 48029814 GAGAAGTCAGATAGAAAGCATGC 60 48029428 48029752 ATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 2 2 2 80 1 48029792 48029813 AGAAGTCAGATAGAAAGCATGC 59 48029427 48029752 TATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 1 2 3 80 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973768 70974218 CAGTTAGTAGTACAGCAAGCAG 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 2 2 2 108 7 49429648 49531755 GGACAGAGATGTTGCAAGAG 59 49531826 49531844 AAACTCACTCTGAAGCACC 58 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079640,ENSRNOT00000091697 3 2 5 89 3 8582413 8582434 GTAGATGAGATTGAAGCCTGGA 60 8582483 8582828 CTTGGAAAGCTGGATGTTGG 60 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 3 1 2 80 9 15626013 15626034 CTTCAAGATCTACGACAAGGAC 59 15624086 15625972 AGCTTGTAGATTGCCTCCA 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000051385 2 1 3 81 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492977 134494128 CTTGAAACTGCAACTTGTGC 59 NA Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 2 1 1 60 1 198528662 198528680 AAGATTGACCCAAGGTGAC 57 198529118 198529139 TCAATTCGGCTCTTCTAATTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem259 ENSRNOG00000012808 ENSRNOT00000080292,ENSRNOT00000017245 3 2 2 81 7 12772112 12772130 TACCACTACCGCTTTAACG 57 12771957 12772068 AGTAGATCATGGAATGCTGG 57 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 3 2 2 83 10 104618317 104618337 CTGATGAAATTCCTGGAGGTG 59 104617291 104618272 CAGTAGAGTCAGGAGGCTG 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076545 2 2 3 94 1 48048384 48048402 AGTCACCTGTTGGAAGGAG 59 48048460 48049619 GTCCTACCAAGGGCTTCTG 60 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304 2 2 3 80 1 198304445 198307529 GCCTCAAATCAAAGGAGCTG 60 198304384 198304402 GAAGAGCCTTGTATTGCCG 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027518 3 1 3 80 10 15454918 15457172 ATCCTCATTAACTGTGCTGC 58 15454857 15454876 GTCCACCACAGTCTTAAAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826 3 1 3 98 10 15457227 15457246 CTATGGATGTCCGAGTTCCC 60 15454441 15457170 GCGTCATAGCATAGTTAATGAGG 60 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083 1 1 2 197 5 90971974 90975848 CGACATAGAGTCAATTCAAACTCC 60 90976002 90998809 GTTTCGGCTCACAATATCCTC 59 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118 2 1 2 81 4 27247455 27247473 ATGGAAGAGGAACGAGAGC 59 27244949 27247411 GTAGAAATTGCTGCTCCACC 59 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000004881 2 1 2 87 13 60595515 60595534 ATGGCCATTGTATCTGACAG 58 60595584 60596663 TATCCATGGGTTCCTCCTC 58 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821 2 1 2 125 10 109966945 109967713 AGGTGTTTAACTTGCAGGG 58 109967802 109968419 CATACTGCTCCAGATCCAG 57 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040 3 1 2 80 13 56843665 56865578 ACCTGCTTACATAATTCCTGTG 59 56843606 56843625 TGGATATTTAGCCTTGTGCC 58 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469 3 1 2 155 2 120313407 120316295 GGATGGATGGCCAATTAGC 59 120311266 120311286 ACTCCCTTGCTTTGTAAAGAG 58 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 2 2 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11073740 11075499 GTCAACTCCATGATGTACTCCT 60 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000090264 2 1 2 88 18 27086606 27087893 ATGAGCTTGGTAGGAAGGC 60 27091190 27091209 TAACTCTGCAATAGCCTGCA 60 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000090831 2 1 2 94 12 37519725 37524809 CAAGCGACTGCTCTTTACG 59 37524867 37524885 GGGACACGAGTCTTCTGAC 60 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368,ENSRNOT00000066233 3 2 2 108 7 117002973 117006988 CTACACATGTGGCATGCAG 59 117007060 117007078 TTATTCCAAGGCCCACCAG 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000090192 1 1 3 80 X 71193970 71194150 CTCCAGGCAAAGATACAGAG 58 71194190 71194211 CAAACCATAGGAAGAACTAGGA 57 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312 3 1 2 80 14 44908679 44915802 TGAGGGTCATTCCAGAGTC 58 44915844 44915864 CTTCAAGCTCTGGTATTGAGG 59 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724 2 1 2 89 8 13248027 13251719 GCTTCTGTCTATGAGCTTGG 59 13247957 13247975 ATCGACGAAGTCCTGTCTG 59 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000085464 1 1 2 80 12 32533694 32533713 GAAGATGGCACAGTACAAGG 59 32533754 32594996 TCTGTCAGAAACCTTTACCAC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000084099 1 1 18 80 1 43475843 43475862 GCCCTCTACTCTATCGTGTG 60 43475900 43508260 CAATCTATGGACCCTTACAATCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000085873,ENSRNOT00000077168,ENSRNOT00000091832,ENSRNOT00000089428,ENSRNOT00000092034,ENSRNOT00000024682,ENSRNOT00000079628,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 15 18 60 1 43507443 43507462 TCTGCCTGTAATGTTCATGG 58 43508249 43508267 GAGGGTGCAATCTATGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000045144 3 1 18 159 1 43454884 43475251 CCAATGCTTGCATGGAGAC 60 43475374 43475392 TCTCTAGCTTCCCAAAGCG 60 NA InUTR Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000028786 3 1 2 92 9 16754373 16754632 AAACTGGATAAGGAGGCCG 60 16754688 16754706 GTTACTGAGAACCTGCAGC 59 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000078969 1 1 2 80 18 27634628 27634646 ATCTTTGGCACCCTGTACC 60 27634690 27635014 GTACATCATCCGTTTACCATATTCC 60 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 3 2 2 83 3 152631148 152631166 ATGGACTTGAGCTATGCCC 60 152631212 152635249 AAACTGGAGTTCACCAAGGA 59 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 1 2 3 80 12 36695273 36734422 CAGGTGCTCAAGAATGTCC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770 3 1 2 107 19 10340776 10340794 CTCCCTCAAGCTGATCCTG 60 10340428 10340705 CACTTATGCAGCCTCTCCT 59 NA Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 1 2 2 80 13 68836906 68836925 AACACCATGACCACAAAGGA 60 68836212 68836865 TTCTTTGTTGCCACTTCTGAG 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000080304 3 1 3 82 6 136050639 136059685 ACACTATGCACATTTCACATGG 60 136059727 136059746 TGAGTTTCTACACCGAGCTC 60 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 1 1 1 60 10 14053557 14053575 TACTGGATCTGGGCTTCTC 58 14052975 14052993 AGGAAACAGAAGCCTACGA 58 NA DesignNoJunction Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 3 1 1 60 10 14052721 14052739 TCTTTGCCACAGATCAGCT 59 14051904 14051925 TTCCCTAGGGAATGTCTAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817 3 1 2 80 12 40510568 40514899 GAAAGCCATCAAGGAGACC 58 40514943 40514961 GGACCACTAATTCCAGCTC 58 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845 3 1 2 83 6 144118112 144123338 AATGCCGAAAGAGAAGAACC 59 144117051 144117069 GACTACCTGATTGTGCAGC 59 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000084049 3 1 2 117 4 117267292 117267311 CATAAGGAACAGGAGCTGAG 58 117264593 117264615 CCAGGAGCTCAATGAACTG 58 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 3 2 2 80 6 55423172 55423191 TCAGGGCTGATATAACTGGA 58 55423234 55423757 TGTTGTCTATCAGCATGGG 57 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 3 1 1 60 1 91072751 91072769 ATCCTGTACAGACTGACCA 57 91072314 91072334 AGCAGTATAAACAGTAGGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000016946 3 1 2 85 2 127688688 127688708 CAAAGCTGGAATGGTACAGAG 59 127688750 127688849 AATTATAGAGCTCCAAGACAGAGG 60 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 1 2 2 80 4 168221646 168230127 GACCTGTAGTGCTCCTACC 59 168221584 168221605 CTCTGTTGTTCATCAATCACCA 59 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000044885 2 1 2 80 3 15376508 15376528 TCATCGGTTATGAAGAAGCAG 58 15374116 15376466 AGCTGACTTTCACCATCAC 58 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000077993,ENSRNOT00000081465 1 2 2 80 1 91877704 91877725 CTGTGCTGATGATCTTCTTTCC 60 91877764 91878911 TAACTCAAATTCGCCATCCAG 59 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 3 3 3 102 3 22943647 22943666 TAACTTGGAGCTCCACTCTC 59 22938849 22943585 ACCAATGTAACCTTGATACCTG 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000046744 1 1 6 80 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132080072 132091522 TTGATAATGCCCATGCTGC 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000056493 1 1 2 129 4 145453516 145453534 AGCTGCAAATGGAACAGAG 59 145453403 145453426 GTGCTTTCTATTTAACCCTGGT 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904 1 1 2 80 6 24160240 24163037 CATTCACTGCTCTGACTATCTG 59 24163078 24163096 AGGCCAATCTCTTCCATGG 60 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298 1 1 2 89 17 27544215 27550114 ATAGCACAGACAGCCAGTC 60 27544144 27544162 ATGTTGGCTGCTCTTTGTC 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000079523 3 1 2 84 19 10755993 10756012 ATGTTCCTGGACTACAGAGC 59 10754566 10755102 TGCATCTCCACAGAGAAGTC 60 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714 1 1 2 80 5 62247862 62255990 ACCTCAAGCTAGAACAAGAGG 60 62247802 62247820 CTGTACCCACAAGTCCAGG 60 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000005861 2 1 2 98 6 86739143 86744794 CAGTGCAGGATTTACAAGGTC 59 86744848 86744872 CCAACAATTACTACTGAGTCTTCTG 60 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 1 2 2 80 14 783785 783806 ATCAGAAACAAACAGCAGACTG 60 783845 785628 CCATATCTGCTGTCTCATTGG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 2 3 3 80 13 71134712 71134730 ACTGCAAAGCTAGTCACCA 59 71134773 71136850 ATCGATATTCACCTCCCGTG 60 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 1 2 2 80 5 153261796 153262441 CTGAGTGAGAAAGATCGAATGG 59 153262482 153262500 GTCAAAGTTGGCTGTTCCT 58 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000083912 3 1 2 84 13 56941979 56941997 GTGACTCCTTCAGGGTCAC 60 56941507 56941931 CACATTCCTTGAGGCATGG 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000084946,ENSRNOT00000089723 3 2 4 96 1 128226674 128226692 TCTACGGGTTGTCATTCCC 59 128217304 128220785 TATCCTTTGGGCATTCAGCT 60 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071 2 1 2 98 9 10997101 10997394 GGAACCAGGTGAGAAAGGA 59 10997616 10997637 AGATTTCATCTTTGGTCTCAGG 58 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000076529 1 1 2 129 8 4441120 4441143 CTCATCTTAGTCTCCATTCTTGTG 59 4441229 4577160 TGAGGTGATTGCTCTCATCTC 60 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 2 2 2 80 1 184387167 184387185 ACATCTGTCTTTCACCCAG 57 184387229 184392549 TGGCACAGTTTGATTAGGG 58 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000066780 2 1 3 80 2 257472583 257474714 AGGCAGAGATTAAAGACATGC 59 257472523 257472541 TGAGCTTTGGGACATAAGC 58 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 3 2 3 82 4 22111747 22111766 TACGAATTCAGGGAGTCGTG 60 22111810 22115360 CACCACAAACCTGTCATCTC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 1 2 3 81 4 22111748 22111766 ACGAATTCAGGGAGTCGTG 60 22111810 22115360 CACCACAAACCTGTCATCTC 59 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923 1 1 2 121 3 122701433 122701451 TACAGGATGAGGTGCATCC 59 122701041 122701349 CCCTCACACTTGATCTTCCT 59 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 3 2 2 80 7 122114560 122120012 GATATGGTTCTGGCTTTAGCTC 59 122120053 122120071 TGAAGCGAGACTCAGTTCC 60 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 3 2 2 80 11 17129415 17129434 CTGGGAACAGACAAAGACAC 59 17080148 17129377 AAGATTAGACTTTGGTACTCCCTC 60 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 2 1 1 63 8 40160486 40160506 AAGGAGTTGATCTCAGAAGGA 58 40160150 40160168 ACTTCTCTGTTTCCCAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927 1 1 2 80 14 78683104 78684865 GAGGAAAGAACAAAGGTCTCAG 59 78682782 78682801 TCGAAGATGCAGTCACTCTC 60 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000015223 1 1 2 80 9 20114209 20114227 ACACATGTGAGTTCGTCAG 58 20111973 20114165 TTAGGTTGGCTACAGAGGT 58 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904 2 1 2 80 9 20112240 20114163 CTCTGTAGGAGATAATTCCAGC 58 20112181 20112201 CTCTGAACTGTACTCACTTCC 58 NA Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 3 2 2 80 7 133457356 133457377 TGCTAATCTCCTTAACATCCTG 58 133460970 133469107 CTTTATCCTCCTCAGAAACTCC 58 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000084413 2 1 3 88 8 111064464 111066160 GTATCTTCGTGCTCGATGC 59 111064394 111064413 AGAATGTGGTGAGACCTCAG 59 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 3 3 3 80 8 111078413 111079534 AAGCACTCAGTAGAAAGGTCTC 60 111078354 111078373 ATTATCCAAGACTCCCTGCC 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 3 2 2 80 2 23301587 23302794 AGAAACTGGACAGGTGGTG 60 23302835 23302856 TTAAATTCGTCCACCCTTTCAG 59 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774 3 1 2 81 5 7735298 7747505 GATTACAAGATAGTGAAACCCAGC 60 7735240 7735258 TCAGAGAAGGCACAGACAG 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087 1 1 3 86 1 136739824 136841531 ATTTAAAGGCCACAACCTTCAG 60 136739759 136739777 TCTCTTTGACAAGGTCGGT 59 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 3 3 5 80 4 164530393 164530413 GGCATGAATGTAAACAGACCT 59 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 3 2 2 80 13 73880823 73889866 AAGGAAGAGAATGAGGATGAGG 59 73880764 73880784 CTCATCCCAAATGTCATCACC 59 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 3 1 1 100 9 24509680 24509699 TTGTCCAAGAAACTGTACCA 57 24506362 24506383 TACCATACTCTGGATAACTCCT 57 NA DesignNoJunction Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 2 2 2 80 8 6901171 6904218 CAAATACTACAATCTGGCCAGG 59 6904259 6904277 ACCGCGATTGCATAAAGAC 59 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905 1 1 2 84 8 6908640 6914947 CAGAAATCAGCTGGCACAC 60 6914993 6915013 TCTTGGAGGATTACTGAAGCT 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000075317 2 1 6 86 12 41302675 41305880 CCTATGATGTCCTGGAGGG 59 41302579 41302597 ACTTCCTGATGAGACTGGC 59 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200 1 1 2 155 2 204886231 204932378 ATCGCTCTCCTTCACAGAG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA InUTR Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000009693 3 1 2 81 6 105465158 105467551 CGTCAGGAGATGAAGGATCC 60 105465096 105465115 AAGTGGAAGTGTGGAGACTC 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 2 3 4 80 14 79355781 79355799 GTTGCTGAGACTGAGGAGG 60 79355840 79387348 TCTAGCAAGCAAATTCCTTGTG 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000038396 1 1 4 88 4 167483798 167483817 ACTATAGAGGTCGTCCTCCA 59 167483868 167483889 ATTCCTAGGTTCGAGCCTG 59 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000043387 2 1 2 85 1 225932030 225937537 GACCCTAAGGAGAAGGAGC 59 225931963 225931981 TCCTCTACCTTCTGTCTGC 58 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758 2 1 2 80 9 111653425 111653444 AAATGATGGGAAAGAGCCAC 59 111653482 111690166 CTCTCCTTTCTTTCCATAGATGTG 59 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884 1 1 2 80 4 68819283 68819301 CACATGACCATCTCAGCTC 58 68814493 68819241 AATCTGTGAGAAGTACAGCAG 58 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 1 1 2 87 20 4120113 4124687 TCTGAGAGCAGGATCAGTG 59 4124738 4124756 GTGACATTCACTCCTGCTG 59 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000088705 3 1 2 87 8 117520061 117524681 ACACAGTAGAACAGCTTTCTC 58 117524729 117524748 TCATCTCCTTGGTCAATGAC 57 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 2 3 6 60 20 4611846 4611864 TTCATCGCTATGAGGAGGT 58 4612226 4612244 CAATGAAAGCCGTAGAGGA 57 NA DesignNoJunction Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000049855,ENSRNOT00000045393 1 2 3 80 3 128914911 128919227 AGAAAGCGCTGATCAAGAG 58 128919271 128919289 TTGTGACTGAAGTCATCGG 58 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 3 1 2 82 16 85299043 85305255 GGAAACAGAACAAGATGTAGACC 60 85298983 85299002 TCTCATCATGGTGAGAAGCA 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660 2 1 2 81 17 29210778 29210796 TTCTGGAGTGAGGATGAGC 59 29205608 29210736 AGAACCATCTCTGAAACTTGAC 58 NA Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 3 2 2 80 7 58340392 58342734 GCACCTATTATGGTAGCTTGC 59 58340332 58340353 TACAGGAGATCACAACAGAGAC 59 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000080188 3 1 2 83 10 109604599 109604897 GGCAGAAGGTACAATAATCCG 59 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000035009 2 1 2 80 16 7387900 7388162 AGTACAGAAAGACCTATCAGACTC 59 7387843 7387861 CCTTCTCTTTCAGGTGGGT 59 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 1 2 2 80 8 76407609 76407627 TGAAGGTGGAGAAGTTGAC 57 76407670 76409499 GGAAGATCATCTTCCCACTC 58 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 3 2 2 80 8 76407612 76407630 AGGTGGAGAAGTTGACCTG 59 76407672 76409502 TTGGGAAGATCATCTTCCCAC 60 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522 1 1 2 80 1 87935898 87935916 CGGTATGTGGAGACACAGG 60 87933574 87935857 GTTGAACTGGTACAGTTTCAGG 60 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 2 2 2 80 14 7205015 7206509 CTCTGTGGAAGGGAAAGTG 58 7206553 7206571 AGAGGGTCAAACATCTCCA 58 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 1 3 3 81 19 15419657 15421199 TTCTTCAAAGGAGTGGGCT 59 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990 3 1 2 63 5 136112517 136112535 GAGCTGGATTACAGCATCG 59 136112562 136124439 CACCTTGGCTGTTCTTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 3 2 2 80 2 22348103 22349767 GGAAGATAGCAACAATGATGGAG 60 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000090114 3 1 2 91 8 58144778 58144968 TTCCTGGAGAAGATGCAGAG 59 58145020 58145040 GGCAGGAGATTTAGAAGACAG 58 NA Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 3 2 2 60 16 18640730 18640751 CACAGGAATATAACCAAAGCTG 58 18640367 18640388 CTTCTTGAAGTTGTAGCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281 2 2 3 92 12 46353400 46353418 GTGGGAGAGTTTCTAGGGA 58 46352197 46352621 CAAGTAATTTCTCAACCCACAC 58 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000018552 2 1 2 80 9 27630496 27634475 GGAAGCAGAGTCAGAAGCT 59 27630434 27630455 CTTGTCTGCTCTTAATGCTCTG 60 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000061871 3 1 2 95 6 7965014 7965033 GTCAGAGATCTCACCTACCA 58 7965711 7966831 CATGTCCACAGATTCAGATAGG 58 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000049303 1 1 5 80 4 176261760 176261779 GGGAACTCAGAAATGTGGTG 59 176257062 176261722 GATATGGAAATCCTGGAATGTCTG 60 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000049303 3 1 5 88 4 176261778 176261797 CAGAACCTGTTTACACTGGG 59 176257072 176261727 TCCTGGAATGTCTGAAGCT 58 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 1 2 2 80 3 14505743 14505763 TAAGGACAAGAAGATGGATGC 58 14505805 14506019 ACCTCTTCGATCACAAAGC 58 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000060819 2 1 3 99 20 5118084 5118298 GTCTCCCAGACACTTCCTC 59 5118359 5118379 GAAGAAGGAAAGAAGTGGTGG 59 NA InUTR Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 1 2 2 81 14 1463932 1464559 GCTTCGAGAATGAAGGTGC 59 1464604 1464622 TAACAGCACAGGAAGTGGG 60 NA Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 2 2 2 80 12 45038055 45039993 TTGAGCAGAAGATTGAAGAGG 58 45037995 45038014 CTTGTCTTTCCAGGAGAGTC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 1 4 4 134 10 65309839 65310757 AGGTGAAGATCATGACGGAG 59 65308298 65309742 TCAGAGTCCCAAGGATGGA 60 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000080691 1 1 2 106 X 157357232 157357251 TGCTGAAAGGAAATGCAGTG 60 157358461 157362691 TCCTTCAGGCATTAGAAGATCC 60 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000080691 3 1 2 116 X 157357222 157357241 AAGTTCAGCTTGCTGAAAGG 59 157358461 157362691 TCCTTCAGGCATTAGAAGATCC 60 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000087294,ENSRNOT00000037708 1 2 2 84 7 15072675 15072694 GGAAACAAACAGGAACACCA 59 15071206 15071226 AGAGTTTCTCCAACAACTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000024445 1 1 2 80 9 94897833 94898734 ACTAATATCTTTGGGAGACGC 58 94898775 94898794 TTTACCAGAAGCAGGATGAG 57 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 3 2 2 137 3 143807137 143807155 ACTGTCCAAGGGATCACTG 59 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 3 1 1 81 9 97355951 97355969 CCAGGAAGGCAAATCACAG 59 97365600 97365618 GTCAAACAGATGCACATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 3 2 2 94 8 117325016 117332220 CACTTGTTCAGCACAAACTG 58 117332276 117332295 GCTTCAGTGAATTTGGAAGC 58 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000080778 1 1 2 82 8 117343832 117344217 GGCCAGAAAGTTACAGATGAC 59 117344261 117344279 TCGTAGAGCTTGATGGGAC 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004 1 1 2 81 13 86424556 86425893 AATCACAGGTGGATACCCT 58 86424493 86424511 CTGTACATCTGACTGGCTG 58 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000048140 2 1 2 80 10 89681942 89683341 TGTACAATCGTGGAGAAGGG 60 89683383 89683402 CATAGTTGGTCCAGCAATCC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653 3 1 3 80 14 72333627 72335517 GCCATTAAGGGCTGAAGTG 59 72333565 72333583 TCTGTATCGATTCCTGCGT 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 3 2 2 84 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824941 43824960 TTCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 1 3 3 80 7 68447234 68449554 CCTGGCTGGTAAATTGCTC 59 68447172 68447193 CCTGATGATAACACGACTATCC 58 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 3 2 2 80 8 116512952 116514096 ATCAGCTACATCAGGTACCA 58 116512891 116512913 GAGGTCTGATTATAGAGTTGAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118086 87120488 GATGGAGACAGAGGAGACAC 59 87118024 87118043 GTCCTCAGGAGTAGATGTGC 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118086 87120488 GATGGAGACAGAGGAGACAC 59 87118024 87118043 GTCCTCAGGAGTAGATGTGC 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000011000 3 1 3 83 6 3743697 3748790 GAAATGGAAAGAGTGCTGCA 59 3743633 3743651 TCCACAGTCTGTAAGACGC 60 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 2 3 3 100 10 109900902 109903324 AACTGAAAGTGGTCGGGAG 60 109903387 109903406 GATTTCTGCCTCTTTGAGCC 59 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 3 2 2 83 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890241 10890259 TGGAGCTGTAGTTCCTGTG 59 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000049624 3 1 2 83 19 22281734 22281753 GGAAGAGGGACTCATGTCTG 60 22179569 22281690 GGTTCATAAACTGAGCCTGAG 59 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000044363 2 1 2 106 10 57611212 57611230 GAAATGTGAACGAGCACAG 57 57611300 57613519 CTTATAAGCCAGGCAGCTC 58 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185 3 1 2 93 10 55907107 55907127 CTCAAGAACTTTCTGCAGCAG 60 55904817 55905850 CCCGAGAACCAGACTTAGG 59 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 2 2 2 80 13 85476281 85476300 GATGAAATCCATGTTTGCGA 57 85476340 85481541 ACCACTCTACCATCAAATATGG 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006 2 1 2 81 1 263920530 263920548 ACATCAATGAACTCTGCCG 58 263917791 263920485 TAGTCTTCACTGGTGGCTG 59 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000036646 3 1 2 80 14 64782932 64782950 CACGAAGAAAGCCAAGAGG 59 64782994 64785042 CCAATCAGGTAGAACCGCA 60 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 3 2 3 82 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228639 47228662 CATCATATTCTTCCTCTTCCTCCT 60 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000080699 1 1 2 80 2 104919822 104919841 TTCACCACCAATGTCTTACC 58 104917805 104919783 GTCTGAGAGCATCATTAGATAGG 58 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 2 2 2 80 11 38075286 38077321 ACATGGGATACAAGAACAGC 58 38075225 38075245 CATTCAGCTTCATAAAGCTCG 58 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177 2 1 2 80 X 20393856 20394106 CTAGTTCTCAGTTGCAGGAG 58 20394148 20394167 GCATAACAGAAGACTGACCT 57 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 3 3 3 90 9 44570823 44571061 CTGGGACTACAGAAGGCAC 60 44571112 44571133 TGCGTATCAAGTGTTTAACCAC 60 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000079795 1 1 3 98 14 6520017 6520037 TATGCCCAGTCCCTTACAC 59 6519937 6519955 ACACATGTGGTCTCCACAG 60 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124 2 1 2 80 1 244757837 244776570 TACAAGGACAGGAAAGAATCC 57 244776612 244776630 TGTGACAGAGAAGCATGAC 58 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 1 2 2 88 7 2824135 2824306 GATTGGAGAATTCTGCATGGT 59 2824067 2824085 ATTTGTTGGATGCCTGCTG 59 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000023286 2 1 2 84 2 29655169 29655187 CTTTGAAGTGCCATCCACC 59 29655234 29659727 TTCTTCCCATGTGAGGTCTG 60 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000042227 2 1 2 133 9 45205609 45206412 CGTGTCTATGAACCAGATAGG 58 45204260 45205515 CCCTTGTTAGTCTTGTAGGG 57 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639 1 1 2 80 2 27311197 27311216 CTGCTAAGGACAGAAGTCAC 58 27308950 27311155 GAAAGTAGACATCCGAATAGCC 59 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639 3 1 2 80 2 27311199 27311217 GCTGCTAAGGACAGAAGTC 58 27308951 27311155 AAAGTAGACATCCGAATAGCC 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 1 2 4 166 1 201226088 201238800 ATCTGACAGTCCAGAGCAC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985 3 2 3 81 14 5938303 5940714 AAATTGATCCCAGGCAACAG 59 5940756 5940776 TCCGGTTAGGAAAGAATTGTC 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445 1 1 2 80 X 159190141 159190161 AATCTAGAAGCACCTCTTCAG 57 159189327 159190099 CATTTCTGGGTTCTGAGGT 57 NA Rattus norvegicus 81 Fgd1 ENSRNOG00000038970 ENSRNOT00000003443 3 1 1 80 X 20141307 20142289 GGTCCATCCTAGAGAAACAG 57 20142332 20142350 CACCCTTCTCCATGTAGTG 57 NA Rattus norvegicus 81 Lalba ENSRNOG00000010811 ENSRNOT00000014456 3 1 1 80 7 140089821 140090267 TCTCCTGTGACAAGTTCCT 58 140089759 140089777 CGATCCCTTTGATAGCCAC 58 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 3 2 2 80 5 62163813 62163832 CCTCAAGAAGCTGCTATCCA 60 62162235 62163770 ACAGAAAGGTTGTCCTGGT 59 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244 3 1 2 107 2 166423452 166423472 TCCAGAAGACATCTGAAATGG 58 166423541 166424765 AGTTTGGCAAATCAAACCC 57 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000012417 3 1 2 99 2 166423452 166423473 TCCAGAAGACATCTGAAATGGA 59 166423531 166424757 AAATCAATTCCCAACACCAGG 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 1 2 2 80 8 36235134 36238684 CTTGACTGTCAATGGACCC 58 36238727 36238746 CATTTGATCTGGCCCTTCTC 59 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000090232 1 1 2 80 5 156549295 156551097 TATGCAGACAAATGAGCCA 57 156551139 156551159 CTTCTGGTAGAAAGTCCTTCC 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 3 2 5 80 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664246 28730317 CCCACATAACCACTTTGTCC 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 2 2 2 80 3 161212899 161213780 GACCACAAGTTTCACAGATCC 59 161213821 161213840 TGGATCTCCTCATTGATGCT 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 1 3 3 81 12 46801167 46801915 ATCTTGGATAAAGTGGTGACAG 58 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000035310 2 1 2 82 8 50237324 50238295 CCTACAGTTACCAGGACCG 59 50237260 50237278 GTCATCCTCTTCCACGGAG 60 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 2 2 2 80 3 80573370 80573388 ACCTGAGTGAGTTAAGCGA 58 80573429 80573745 TGAGGAAGTCATCATACTTGAG 57 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000076541 3 1 3 80 20 49484682 49484814 TTACTCAACTGTACAAGCTGC 59 49484622 49484640 ATGATCCCAGACGTCTCTG 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687 3 1 2 80 2 31763210 31764003 TAGCCCAAGAAGTACCAAGC 60 31763149 31763171 ACTGATGAGGTATATTAGGCGAC 60 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000092151 3 1 2 110 1 255069900 255069919 TATATGACAAGATGGCGGCT 59 255075448 255085651 AATACCATCGGGTAGGACTG 59 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000080305 3 1 2 83 2 266317851 266353084 TCAGGAATGCTGATGCTCC 60 266353131 266353149 TATGGTGGTTCTTCCGGAC 59 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000091456 2 1 2 80 20 50212801 50212823 GCTATGTCTGTTCGATCTGG 58 50212867 50212885 TACCATTGGATCCCTGCTG 59 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000082273 2 1 2 86 2 180012619 180046271 AATTACAAGGAGTGCAAGATCC 59 180046318 180046336 TATGAGGAAACTTCGGGCT 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964 2 1 2 119 7 70784468 70790930 ATTTCACAGGCAGAAGACCT 59 70791012 70791030 ATGCTGGGAGATAAGTGGG 59 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 1 2 2 80 9 35289616 35291111 GAACATCTCAGAGGTGGTG 58 35291155 35291173 TGACTATCTCTGCAACCGT 58 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 2 2 2 80 9 35289562 35289581 ACTGATCCCATTCCTGAAGG 59 35289624 35291119 CTCCTCTTCACCACCTCTG 59 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000079797 1 1 2 97 8 52168572 52186857 AGTTCACGATTCTCGAGCA 59 52186918 52186936 ATAGCATGGCAAACACCAC 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 3 1 1 60 3 168129978 168130001 GAGCTAAAGGAGGAAATAGAAGTG 59 168130894 168130915 CACAGGCATCCTCTAAATTCTG 59 NA DesignNoJunction Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957,ENSRNOT00000076727 2 2 2 80 10 89237653 89237674 ATCCACTCAGACATGAATCTCC 60 89237714 89239681 GTAAGTGGGACCATCCAGTC 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000038549 1 1 7 124 16 63924128 64025118 TTGTTGAGTCAAACGCCAC 59 64025206 64025224 GTTTGACAGGTCCTTCACC 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178 1 1 3 83 X 23124623 23144186 GAGAACAGCCTCCATACCA 59 23124558 23124576 ATGTAGGTCTTGCCTCGAG 59 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 2 2 2 158 9 44483604 44483622 TAAATCCAGCCTGGGACAG 59 44478572 44483483 GACTCTTTGGTGCCTTTCAG 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000066892 1 1 2 83 12 51313075 51313642 ACTGCAGAACAATTGTAACG 57 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000087615,ENSRNOT00000080174 2 3 5 68 20 4806965 4806983 TTCCCAGCCATTGCTATCC 60 4806813 4806832 CTTGAACTGCTGATACCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000080174 3 2 5 80 20 4810668 4810686 AGGTCATGATGTTCAGTGC 58 4808325 4810626 AGATCTCCATAGGATCTTGCA 58 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 1 2 2 60 14 85948313 85951512 ACACAGGTAACCTGGATGG 59 85948271 85948289 AGGAATACATCCTCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073 3 1 2 80 10 96213896 96213915 CCATATGGAAAGTCTGTGGA 57 96204364 96213853 GTGTTTGGTCATAAGCTGC 57 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000004699 3 1 2 81 10 96206469 96206490 TATAATGGAGCACAATGTGTCC 59 96204364 96206427 GTGTTTGGTCATAAGCCCT 58 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 3 2 2 80 16 32457626 32457644 GGAGCAGGTGCTATTATGG 58 32457687 32490245 ATAATGAGTTCCAGCTGCTG 58 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 1 2 2 80 10 90406411 90410230 GACGGCTATAATGATGTTGCT 59 90406351 90406371 CTGACCAAGGAATATCAGCAC 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893 1 1 2 105 3 5816033 5816767 TCTGGTCAGTGTTCACACC 60 5815946 5815964 TTCACCACATCACCTTCCC 60 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893 3 1 2 107 3 5816034 5816769 CTTCTGGTCAGTGTTCACAC 59 5815946 5815964 TTCACCACATCACCTTCCC 60 NA Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 1 1 1 144 16 47718543 47718562 GAGCTGGACAACAAATACCA 58 47723817 47723835 CATCTCCCAATTCTTGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 1 2 2 84 1 127715293 127725404 CGTCACATAATGAAGTTTACGG 58 127725448 127725467 TTCTGGCGAATTCTAAACCA 58 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722,ENSRNOT00000088839 2 2 2 80 12 52112092 52112110 ATGGTACCTGGAGAACGTG 59 52109594 52112049 GCTTTGCTGTTTCTCACCTC 60 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 3 2 2 81 7 98194924 98194942 CGCAGTAAAGGACCAAAGG 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 1 2 2 80 9 61343191 61355100 CGATGTGAACATTCAGAGTAAGG 60 61343133 61343151 GTTTGTGACCGTGTGAACC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000092026 2 1 6 80 5 158109540 158109559 TCAACGACAAGTCTACTGGA 58 158109602 158111036 CTGGAACTCTCCACTCACC 59 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 1 2 2 80 2 30536865 30536885 ACTATGAAACCGACTACACGA 59 30534398 30536826 TGATAGGTGGATATTCCCTGAG 59 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 1 1 1 70 1 72421101 72421119 CTCAGGAGTATGCACCCTG 60 72422290 72422308 CATCATCAGCTCTGGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 3 2 2 81 5 154312108 154312226 TTCCATTCGTGGAGAAGAC 57 154312271 154312289 CTCCTCAAACTCCACAGAG 57 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 1 3 8 85 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000038898 3 1 2 82 1 73396101 73397156 TGAAGATGCTCAAAGAGATGC 59 73396039 73396059 TCTTCTGGTGGAGTCTATCTC 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644 3 1 3 80 16 54184387 54187896 GTGGTTTAACAGGTGTCACTC 59 54187937 54187956 ACACCATTATCGGTTTCTGC 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 1 7 8 98 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347 2 1 2 96 16 71653845 71657641 TTTAATAACGAGTGGCTGCA 58 71661144 71661162 AATCTGTGAGATCACGGCT 59 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000088462 3 1 2 81 16 71653838 71656297 AGTCGCGTTTAATAACGACC 59 71657639 71657660 GTTTCGTATTTCTTCACCTTGC 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642 3 1 2 98 5 78307531 78307550 TCTTTCTACCAAAGTCCGCA 59 78306764 78307470 AGCCAAATCCTCCAGTGTC 60 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000047571 2 1 2 81 3 82926007 82926026 CCTCTGCAGAGACATTTGTG 59 82925943 82925964 TGATGGCGTGGATCATATCC 60 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997 1 1 2 80 3 2717677 2717695 ACAGGTTCATCTGCCTGAC 60 2716627 2717638 CCAGTAACCAGTCAGTTAAATCAG 60 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 2 2 2 80 2 211787069 211787087 TTCCAGATGAACTTGGTGC 58 211786170 211787028 TGCTATACCCTGATACTTTGGA 59 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225 2 1 2 80 2 211785765 211785784 CAGAGTCAAGACTTCAGCCT 60 211772188 211785720 AAACTTGACCTTGAACACAGC 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 1 2 2 85 8 132173003 132173021 CTCTCATTTCCTTGCACGC 60 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 2 2 2 86 8 132173004 132173022 GCTCTCATTTCCTTGCACG 60 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230 3 1 2 92 20 47659677 47659695 TGCAAGCATGCATTGACTG 60 47659751 47663584 AAGCAGAGACTGACACCAG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330 2 1 2 81 16 74327612 74327630 CTTCCACTTCCTGCAAGTC 59 74322814 74327569 CTCAATAGTGAAGCCACTCAC 59 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 1 2 2 82 3 71863419 71864032 AGGATCCAGTGAATGAGGT 58 71863355 71863375 CACGTTATTTACAGTAGTGCG 58 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787 1 1 2 110 3 71863401 71863419 TACAGAAGGGTGACTACGT 57 71854420 71863327 CATCATAGTCCCATTGGCT 57 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000015879 3 1 2 91 16 67522504 67522522 TAGTGACTACGGAGTGGAC 58 67522575 67527005 GAGAATTTCCTTGACGAACTG 57 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000064400 1 1 2 107 3 171774086 171780556 CTGGACAAGAACGATTCCG 59 171780699 171780720 TCTTCAAAGTTGAGAACGTCTC 59 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891,ENSRNOT00000020181 2 2 2 123 16 71019124 71021775 GCTAGTGGGAACCTAAATGG 58 71021861 71023211 ATAAAGGGTCACTTCTGGC 57 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708 1 1 3 100 3 150864957 150875310 GGAGCAGTATTTCATGAAACTCC 60 150863518 150863536 ATAGCAGTGAGGGCATCTG 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000090646 1 1 3 85 16 74799215 74800687 ATTATGGGCCAGTCAAAGAC 58 74801362 74801381 CTTGAGGAAGAGCTTGTCTC 58 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577 3 1 2 81 5 157665474 157690581 GGTCTGAAATGAACTCTAGCG 59 157690623 157690642 TTCTCAATCTGCTGTGGAGG 60 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 1 3 3 88 16 69877420 69877440 GAGACTGGTATTACCGTTGGT 60 69875930 69877370 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736 2 1 2 163 16 81493530 81494709 GCAACAGTATCAAAGTGCTC 58 81494921 81496127 CTTCATACAGTTTGTCCAGCT 58 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141,ENSRNOT00000006634 2 2 3 83 3 51410897 51410915 AAGACCTTTGGCTTTCCAG 58 51408700 51410852 GGTGCCATTTACTCCATATCC 59 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000067508 2 1 2 120 16 81351452 81351470 TGTCTGTCACAAACTCGCT 60 81349438 81349878 TTTCTTCGCAAGTTGCCTG 59 NA Rattus norvegicus 81 SNORA9 ENSRNOG00000052446 ENSRNOT00000078595 1 1 1 85 5 116944916 116944934 ACCCTGTGCATTCCTACAG 59 116944980 116945001 TCTATAACCTTGCTCTGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059306 ENSRNOT00000082701 1 1 1 60 2 177560773 177560791 CTTGATTTGGCTGGCTGAC 60 177560815 177560833 CCTGTGGAGCAGTAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041403.1 ENSRNOG00000057469 ENSRNOT00000091479 1 1 1 60 X 128883065 128883085 AGATCATGCAAGAGTTATGGG 58 128883106 128883125 CTGTGCCTCCAAATACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041403.1 ENSRNOG00000057469 ENSRNOT00000091479 3 1 1 60 X 128883500 128883520 AGATACCTTGGGAGACATGAG 59 128883541 128883560 ATTCTGGATTTCTCGTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058747 ENSRNOT00000088625 1 1 1 60 2 11402478 11402498 CAGAGATTAGTATGGCGACTG 58 11402519 11402538 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000054258 ENSRNOT00000082340 2 1 1 64 2 128343451 128343469 TACTTCCTGTCCTAGTCCC 57 128343405 128343423 CTTATTCCACCACAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058108 ENSRNOT00000077472 2 1 1 60 2 80610652 80610670 TCGGTCAAGGGTATACGAG 58 80610610 80610629 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052672 ENSRNOT00000085327 1 1 1 60 2 124304183 124304201 AACTACCCTGTGTACACCT 58 124304141 124304164 CTACTCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053219 ENSRNOT00000078375 3 1 1 60 5 144839342 144839361 GAGGCTGTGTCTACACTGAG 60 144839301 144839322 ATGTTAGGCTCTAATCGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036044 ENSRNOT00000054167 1 1 1 60 11 72575261 72575279 TGATCTCGGAAGCTAAGCA 59 72575219 72575239 GGAAATCTTGTCTCCCATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051587 ENSRNOT00000080212 1 1 1 65 16 10439145 10439163 ACATCTGCGTCAGTAGGTG 60 10439192 10439210 TCACAGGTTAGAACACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050776 ENSRNOT00000072576 1 1 1 60 16 20205919 20205937 TCTGAACAGTCCTGGTCTC 58 20205961 20205979 CTCCTATCCAAGCACCACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050776 ENSRNOT00000072576 3 1 1 60 16 20205935 20205953 CTCATCTGATCGCTGAACC 58 20205977 20205995 GAGTATCCCAGGCGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109100.2 ENSRNOG00000057827 ENSRNOT00000090916 2 1 1 80 15 33342549 33342977 GAGTAAAGATACCTGATGCCC 58 33342489 33342508 CATCTGGCTGGATTAGTTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056734 ENSRNOT00000082727 3 1 1 60 2 74322838 74322857 TGTGTCAATAGGTGGCAGAG 60 74322879 74322898 TCCTAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060236 ENSRNOT00000084672 2 1 1 63 5 21556663 21556682 ATCCGAGGAGTGATTATTGC 58 21556708 21556726 ACAGGGTTTGGTGTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053629 ENSRNOT00000084140 3 1 1 60 11 71971347 71971366 TAGGTGACAGAGAAGACAGG 58 71971306 71971324 ATGCAGGTGTTCACAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073141.1 ENSRNOG00000048081 ENSRNOT00000071444 1 1 1 60 5 135828855 135828874 TCTCTATGTAGACCAGGCTG 58 135828814 135828832 ACTCAAGAGGCAGAAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044300 ENSRNOT00000069567 1 1 1 60 16 60060620 60060641 CCCTGAACATACATGATCTCAC 59 60060581 60060600 AACTAACCAAGCCTAACTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056304 ENSRNOT00000079441 1 1 1 60 16 47057399 47057417 GTACATCAGGAGGTGGTGG 60 47057441 47057459 CCCAGGCTGGAATACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034249.1 ENSRNOG00000046846 ENSRNOT00000072958 2 1 1 60 11 58661291 58661310 GCCCATTTCTCAGTTCTCTG 59 58661333 58661351 TACAGGGCTATGGCAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057551 ENSRNOT00000078181 3 1 1 60 8 32366180 32366199 CAGAATCACAGCCAATGAGG 59 32366221 32366240 GAGTCGCACTTTGAATTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000076785 1 1 2 82 1 238413391 238435099 TTGAAGTTCTCAAGGAAGCA 57 238413328 238413346 TGCAAACCACTTCTTTCCT 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000053894 ENSRNOT00000085287 2 1 1 60 X 130545542 130545563 TTCCCAAGGTGAGATTATTGCT 60 130545584 130545602 CCATCTCAAATGGCTGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037729.1 ENSRNOG00000052455 ENSRNOT00000081986 1 1 1 80 X 29174891 29174910 ATATGTTGTCAGTTGCTGGG 58 29174951 29176346 GAATATCAAAGAAGCCCTGGA 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056921 ENSRNOT00000077320 2 1 1 60 8 18228008 18228027 GGTCAAAGAGAACCTTCCTG 58 18228050 18228068 TACTCATGCACCCTTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025284.1 ENSRNOG00000043057 ENSRNOT00000067450 2 1 1 60 16 31553038 31553056 TCAGCAAGTCTCCTACGAG 59 31553080 31553098 TCGCCTGATTTCTTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054717 ENSRNOT00000082640 1 1 1 60 16 23437273 23437294 TGTGTCAATAAGTGGCAAAGAG 59 23437234 23437253 GTTCAAAGGTCCAAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061708 ENSRNOT00000079211 2 1 1 61 8 20133515 20133536 GCAATGACAATTCAAGCTTTCC 59 20133558 20133576 TTTCAGGTCAGGGTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025065.1 ENSRNOG00000036388 ENSRNOT00000054504 1 1 1 60 16 27094283 27094301 GAGCTTTGCATGGAAACTG 58 27094322 27094343 CCACTTCAGATACCTAATTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000058810 ENSRNOT00000086906 1 1 1 60 16 71275033 71275056 GGCTGAATACTGTGTTCTTTAGTC 60 71275072 71275093 CTTTACTCTTGCATGGTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000057773 ENSRNOT00000081143 3 1 1 98 16 12367497 12367515 TAGAGCAGGTACAGCATGG 59 12367576 12367595 CTTACCCTACAGGTGGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056975 ENSRNOT00000081177 3 1 1 60 X 21026075 21026094 ATAGAGGAGGTTTGGTCCAG 59 21026114 21026135 TGTGGATGTTCTAGTAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041834 ENSRNOT00000063587 2 1 1 65 6 44933697 44933719 GTCAAATGGTCTTGTCTGATCTC 60 44933744 44933762 TTTCCTACCCAAACACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056492 ENSRNOT00000090969 3 1 1 61 X 101117204 101117222 GGTTGCTGTGTCACATGTG 60 101117161 101117181 TGAATGTAGACATTGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA24 ENSRNOG00000061126 ENSRNOT00000090845 2 1 1 60 X 62641893 62641913 ATGTCCTGTAGTAGCTTTCTG 57 62641853 62641871 GTAGAGGTACCATCCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059968.1 ENSRNOG00000054230 ENSRNOT00000078021 2 1 1 69 4 47117756 47117774 ACTGTGAGATCGCTTCTCG 60 47117705 47117725 TTGATGACATGTGACTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061284 ENSRNOT00000079519 1 1 1 60 4 176264353 176264373 TCAACTGATGTGGTTAAGTGG 58 176264313 176264331 GAAACTAAGGCACCTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071598.1 ENSRNOG00000054937 ENSRNOT00000090467 2 1 1 162 8 123829381 123829399 ATACCTCCACACTACCTGC 59 123829237 123829256 AGGTAGTGTGGAGGTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059483 ENSRNOT00000087929 3 1 1 75 6 57104342 57104360 TGTTCACTTCAGTGGTCTG 57 57104285 57104303 ATCATCTTTGCTCAGCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053833 ENSRNOT00000088971 2 1 1 65 1 194939844 194939864 CTCAGTCAAACATTCCTTGGA 58 194939799 194939817 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD20 ENSRNOG00000060216 ENSRNOT00000081260 1 1 1 75 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370602 93370625 GATCAGAACTTGACTATCTAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072054.2 ENSRNOG00000056787 ENSRNOT00000079734 1 1 1 82 1 260061053 260065782 AACATGAGGACCATTGTCTC 58 260065827 260065845 GAAAGGGAAGCTGATGGAG 58 Novel Rattus norvegicus 81 AABR07021704.1 ENSRNOG00000058096 ENSRNOT00000082869 3 1 1 60 13 86670890 86670908 ATCACAGACCAGAGTTTGG 57 86667407 86667426 TTCTGTGGCAGTTTAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051947 ENSRNOT00000080639 2 1 1 60 6 144539605 144539623 ACGTTCCCTTCTTCCTTCC 59 144539645 144539665 AGCATCAAGTTTGTAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027010.1 ENSRNOG00000023936 ENSRNOT00000039245 1 1 1 60 17 10655571 10655589 TGTCTACAGCAGCAAGAGG 59 10655529 10655549 GAAGATCTCACTGCTATTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012592.1 ENSRNOG00000037223 ENSRNOT00000056241 2 1 1 104 2 198682671 198682691 TTTCATGCCTCTTAGCCAG 58 198682584 198682603 CCATCCTGAAGTATCCTTGG 58 Novel Rattus norvegicus 81 Rn60_1_2856.2 ENSRNOG00000061485 ENSRNOT00000081397 3 1 1 82 1 278163269 278163287 ACACTATGGACTGCACCAG 59 278161665 278163227 CCAGGTTTCCTGACAATTTATCC 60 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000056437 ENSRNOT00000088652 1 1 1 60 6 133832361 133832385 GATGATAGTTACCAAGGTATGAGAG 59 133832403 133832421 GACTTCTGAGCTTCAAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012583.3 ENSRNOG00000059093 ENSRNOT00000089409 3 1 1 82 2 198424349 198424371 AAAGGCATACCCACTCTCC 59 198424416 198424437 CTTTAGTGCGAAGTTTCCAGAG 60 Novel Rattus norvegicus 81 AABR07027575.1 ENSRNOG00000058289 ENSRNOT00000080424 3 1 1 62 17 37617629 37617648 GCAATGAAGACAGAAGGCTC 59 37617673 37617691 CCTAAGCCCAACACAAACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054491 ENSRNOT00000079930 3 1 1 67 9 65335401 65335422 TGATACGTCCTATATCTGAGGA 57 65335355 65335373 CAAGCTCCTATTCCAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073039.1 ENSRNOG00000028747 ENSRNOT00000034810 1 1 1 80 4 118705362 118705380 AAGAAGAACACCCTCCGAG 59 118705298 118705320 CTGGTTGATCTGGAAGTACAG 58 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000060706 ENSRNOT00000078847 3 1 1 61 6 133773686 133773705 TGGATCAATGATGACTGTGG 58 133773726 133773747 CTTGTTGTCATGATCATGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056300 ENSRNOT00000085473 2 1 1 75 X 39345895 39345914 TAGAGGCATTGCAGGTATGG 60 39345839 39345859 TAAGCATAGACAATGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058769 ENSRNOT00000085705 3 1 1 60 6 81053952 81053972 TGCTCATACACTACACATACC 57 81053912 81053930 GCAAGGTCTGTGTTAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054240 ENSRNOT00000077904 3 1 1 60 X 33734100 33734120 AAGGTCATTTCACTGATCTGG 58 33734060 33734081 TATAGAGTTTCGAGGGAAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000051441 ENSRNOT00000077183 2 1 1 60 X 113457023 113457041 TTGAAACCAAGAGCTCCCA 59 113456981 113456999 TGAGTCCCTTTATCGTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057405 ENSRNOT00000077326 2 1 1 60 9 40909099 40909119 ATGTATGTCAGTTGTCAGCAG 59 40909141 40909159 ATGTTGACATGTCGGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066059.2 ENSRNOG00000047886 ENSRNOT00000073390 2 1 1 60 9 954532 954551 CAGCAATGAAAGCTTTGGGA 60 954569 954592 CTGTCTTACTAAGCTGTAACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000060642 ENSRNOT00000085606 1 1 1 60 X 123382853 123382873 AAACTGGCTAGTGGAAATGAC 59 123382890 123382913 GGACTAGGAAGAATATGAACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057148 ENSRNOT00000081521 2 1 1 60 9 85010669 85010688 AAAGAGGATGAAGAGGACGA 58 85010710 85010729 TAACCTCAACTGAAGACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053280 ENSRNOT00000085254 1 1 1 60 9 35908679 35908699 GAGAGGTCATGTCTAACTCAG 57 35908719 35908739 ATTAGGCTATGAACCATTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052223 ENSRNOT00000085999 3 1 1 60 6 77154942 77154961 CAGAACTGGACTCTTGGAGG 60 77154901 77154920 ACCACAGATTGCTCCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034183.1 ENSRNOG00000054643 ENSRNOT00000077854 3 1 1 80 11 56178780 56178803 AGATTTCACCTCACATGCGA 60 56178719 56178739 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07010421.1 ENSRNOG00000049767 ENSRNOT00000073517 1 1 1 60 2 134953887 134953908 GATGTTAGGTGTTTGAGATCCA 58 134953848 134953867 TTGGCTTAGGTTCATTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057907 ENSRNOT00000088990 2 1 1 60 X 85538756 85538774 TTCATTAGGTGCCAGACAG 57 85538714 85538733 ATGTTCATTGGTCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057907 ENSRNOT00000088990 3 1 1 60 X 85538755 85538774 TTCATTAGGTGCCAGACAGG 60 85538714 85538733 ATGTTCATTGGTCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053065.1 ENSRNOG00000004381 ENSRNOT00000005784 2 1 1 60 3 89745509 89745527 AAATGGTGGTGAGCATAGG 58 89745467 89745486 GTTTGCATGGACTTCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059048 ENSRNOT00000079127 3 1 1 61 10 74989687 74989705 GTGCTTGCTTCAGTAGCTC 59 74989644 74989662 CAGAGGCCATGCTAATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057599 ENSRNOT00000086779 3 1 1 74 X 118116615 118116635 GACTTTCTCTTGACCAACTGG 59 118116671 118116689 CACAGTGTGACTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049778.1 ENSRNOG00000061137 ENSRNOT00000072545 1 1 1 80 5 137527788 137527806 ACAGGTACATCGCCATCTG 60 137527722 137527746 AGCATATTGTAACCATGGCAC 59 Novel Rattus norvegicus 81 SNORA30 ENSRNOG00000053245 ENSRNOT00000090351 1 1 1 60 1 194727845 194727864 CTTGATTACATCCTTGCCCT 58 194727887 194727905 TGTTCCCTTGAGTAACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025476.1 ENSRNOG00000046180 ENSRNOT00000075699 2 1 1 78 16 38805346 38805364 CAGCAATGAATGCTTCAGG 57 38805286 38805306 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037923.2 ENSRNOG00000049961 ENSRNOT00000072460 2 1 1 80 X 35366828 35366851 GAGATTTCACCTCACATGCG 59 35366893 35366912 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SCARNA13 ENSRNOG00000052095 ENSRNOT00000079733 3 1 1 60 X 122453716 122453734 AGGCATCCCTGCTTAAGAG 59 122453757 122453776 GACAGTATCCAGGACCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056004 ENSRNOT00000088560 2 1 1 60 16 47954616 47954637 GTATGAATGCTATCCACAACGG 60 47954577 47954595 GCAGGCTTCATACACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054106 ENSRNOT00000078342 3 1 1 60 X 145875893 145875912 ATGAAGAACATGGCTAGCTG 58 145875852 145875871 TGTCCATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058493 ENSRNOT00000088107 3 1 1 60 6 54346885 54346903 ACCTGTGCATCAGTAGGTG 59 54346926 54346945 GATCAGAACACTGAGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056091 ENSRNOT00000085064 2 1 1 60 X 74936892 74936912 AGGCTATGTCTGTCTATGCTC 59 74936852 74936875 TAGGCTACTAACCATTCAGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037203.1 ENSRNOG00000028611 ENSRNOT00000031767 1 1 1 60 X 15949849 15949868 ACTATGGCCAAGATCAGTCC 59 15949808 15949826 TGATTGCCATAACCACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060537 ENSRNOT00000079242 1 1 1 60 16 14643968 14643989 TGTGACACATGTATGTCAACAG 59 14643929 14643949 AACACCAAGCATAGACATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000057146 ENSRNOT00000082556 3 1 1 61 X 22375197 22375217 CCCAAACAGGTTGATCTTCTC 59 22375238 22375258 AAGTTCTAACCAAGCTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120246.2 ENSRNOG00000054344 ENSRNOT00000088175 3 1 1 145 19 25775336 25775354 GAAGCTGCAATGGAAGCAG 60 25775162 25775180 CCTTCTTGCTTGGTACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD95 ENSRNOG00000057012 ENSRNOT00000090622 3 1 1 61 10 34152290 34152308 AGTGATGACCACAACATGC 59 34152333 34152351 AGCTCAGAAACAGCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052012 ENSRNOT00000079858 1 1 1 60 9 71697709 71697727 CTGATTCCTGCTCCTTCTC 57 71697667 71697685 CCCACTGGTACAGATATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052638 ENSRNOT00000079865 1 1 1 60 9 35610514 35610537 GTCAAGGGTATACAAGTAGTTGTG 59 35610477 35610498 GACCTTGAGAGCTTGTTTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056402 ENSRNOT00000082721 1 1 1 102 4 20016434 20016453 ACCTGAAGCAGTTAACTCTC 57 20016518 20016536 CAATCTTGACTGCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027672.1 ENSRNOG00000059482 ENSRNOT00000085069 1 1 1 89 17 40171132 40171155 AAGGAGGAGCCTGATTGAG 59 40171208 40171226 ACTACAGCCATGACCTCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058961 ENSRNOT00000088419 1 1 1 60 17 60656473 60656491 TGAGTCACATGAACTGTGC 58 60656431 60656451 ACCGAACATAAACAACCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057346 ENSRNOT00000091033 3 1 1 60 16 8066691 8066712 TGGTGTCCTTATTTCAATCAGG 59 8066732 8066751 TCAAGCTAGGATGAACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051873 ENSRNOT00000083457 1 1 1 60 2 206686724 206686742 GCTCTGTCTATGCTCAGTG 58 206686765 206686784 GCTCTGAGTGCTAAAGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000058244 ENSRNOT00000087463 1 1 1 62 10 37601000 37601019 GGGTTTGGATTTATGGCAGG 59 37600957 37600975 TTGATCTAGCACGGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD124 ENSRNOG00000055792 ENSRNOT00000082994 1 1 1 60 10 86626779 86626799 AAAGGATTCTGAGCCTCAGAG 60 86626739 86626758 TTTCTGAAGGAAGGTCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055857 ENSRNOT00000077191 3 1 1 64 2 118692318 118692336 CAAAGAGTCACCTTGGTGG 58 118692272 118692290 AAGACAGCCATCTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052059 ENSRNOT00000085361 1 1 1 60 10 26172404 26172422 CTGTGGGTGTGGTTTACTC 58 26172362 26172382 ATATTTGGGACAATTGCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056614 ENSRNOT00000078905 1 1 1 79 6 117499485 117499503 CAGTGTTCACCAGAGGAGG 60 117499545 117499564 GTTGAGTTTCCTATTCCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061606 ENSRNOT00000078146 1 1 1 60 4 167223419 167223443 CCTAGAAGTTACTGATGAAGTTAGC 59 167223458 167223479 TCATGAATTCATGTGTCATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036974.1 ENSRNOG00000030819 ENSRNOT00000047059 1 1 1 60 X 8646284 8646305 CTATGATCCACAGAAACAACTC 57 8646326 8646344 GAAGTCAGAGTCATTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060933 ENSRNOT00000077622 1 1 1 61 1 56875278 56875299 GACAACTGAAAGTCAAGAACAG 58 56875238 56875258 CTCAGGGTAATGTATTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002680.1 ENSRNOG00000047795 ENSRNOT00000074222 1 1 1 60 1 80778935 80778954 CTTGAACTCAGAGATCCACC 58 80778894 80778912 TAGCACAGGCCTTTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034260.1 ENSRNOG00000053301 ENSRNOT00000084022 1 1 1 80 11 60336166 60342651 CACAAGAATCAGAGTCTTCACAG 60 60342690 60342709 AGAAGATGGTCACGTTTCCT 59 Novel Rattus norvegicus 81 AABR07016577.1 ENSRNOG00000029052 ENSRNOT00000043218 2 1 1 60 14 104987832 104987851 ATCATCCGAAACGTCAAAGG 59 104987874 104987892 CTGACTCCAACAGGGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141967.1 ENSRNOG00000057189 ENSRNOT00000088433 2 1 1 83 7 78733994 78734012 TTCCTCCGTGAACAAACAG 58 78734058 78738561 CCGTGAGTTCCTTGTTTCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059249 ENSRNOT00000080571 1 1 1 60 9 15608914 15608932 GAGAAGATTAGCATGGCCT 57 15608956 15608974 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035561.2 ENSRNOG00000051906 ENSRNOT00000081310 2 1 1 82 12 19680889 19680985 CATAGCTCAGATCCAGGACTC 60 19681029 19681047 CCTGAGGTTCCCAAGATCC 60 Novel Rattus norvegicus 81 SNORA29 ENSRNOG00000060660 ENSRNOT00000077760 1 1 1 60 4 120182204 120182222 GTTCCCATCTGACTACCAC 57 120182162 120182182 CTATCCCATAAGCATAGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058757 ENSRNOT00000077951 3 1 1 60 4 125335496 125335516 GTTACATGTGAGTCAGTGCAG 59 125335456 125335474 AGGTCAGAACACTGAGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123471.1 ENSRNOG00000018377 ENSRNOT00000024755 1 1 1 60 19 29801844 29801862 GAGGTACAGCAGAAAGGTC 58 29801800 29801819 CTCCCACAACTTTAGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053888 ENSRNOT00000090107 3 1 1 60 1 11970127 11970145 ATGAAGAACGCAGCTAGCT 60 11970168 11970187 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052355 ENSRNOT00000089150 3 1 1 60 7 18641095 18641113 GGAAACACTGGACAAGCAC 59 18641053 18641073 CATGCATATGAGTGTTTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000060251 ENSRNOT00000090297 3 1 1 60 17 73704761 73704780 TATAGCATAGCTCGGCAGAC 59 73704802 73704821 ACCAGATAGGAGCGAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027870.1 ENSRNOG00000059510 ENSRNOT00000080800 3 1 1 80 17 47727238 47727260 GAGTCACTACATGAAGTCTACGA 60 47727299 47729585 CAGCACATCACACTTCTCAC 59 Novel Rattus norvegicus 81 LOC102546630 ENSRNOG00000051633 ENSRNOT00000090902 1 1 1 106 X 63999189 63999385 CAATGTAGTGGAAAGGTGCA 59 63999102 63999123 CTCTTCTTTGTAGGTGGTACAG 58 Novel Rattus norvegicus 81 AC099444.2 ENSRNOG00000052606 ENSRNOT00000088222 1 1 1 68 4 78227730 78227748 ATAAGCCATCCTCGCTCAC 60 78227781 78227799 AGGAAAGGAAGTCCTCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027736.1 ENSRNOG00000045861 ENSRNOT00000074836 2 1 1 60 17 42895332 42895351 TAGTTCAGCTGTTCGATCCT 59 42895291 42895311 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051671.1 ENSRNOG00000053329 ENSRNOT00000079487 1 1 1 60 3 19072173 19072193 GGTCTGGGACATCTTATTCTC 58 19072215 19072233 TAAGTGGCAGCATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054541 ENSRNOT00000082881 1 1 1 60 2 95306962 95306981 GTCAGTAGGTGGCATAGAGG 59 95307002 95307022 GATGTTCATAGGTCAGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114111.2 ENSRNOG00000057190 ENSRNOT00000091092 3 1 1 83 7 70487983 70488004 CAGAGTCAGACCTCAGACAG 59 70488049 70488068 AGAAATAGTTGCAGGCAGGA 60 Novel Rattus norvegicus 81 AC115307.1 ENSRNOG00000059655 ENSRNOT00000079980 2 1 1 80 X 1855164 1855184 ATAATCATCAGGACCATGCTG 58 1854964 1855122 GTTGATGCCTTCCATCTGG 59 Novel Rattus norvegicus 81 AABR07012310.1 ENSRNOG00000033499 ENSRNOT00000041480 2 1 1 172 2 192854572 192854590 TGTGTCTTCCTGCTGTAGC 60 192854418 192854436 TACAGCATCCAGAGCTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012310.1 ENSRNOG00000033499 ENSRNOT00000041480 3 1 1 174 2 192854596 192854614 TAAATGTCCTCCCAAGTGC 57 192854440 192854458 ATGGCGATGGAAAGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052001 ENSRNOT00000078876 2 1 1 60 X 104683499 104683520 ATACAGAGAAGATTAGCATGGC 58 104683540 104683559 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056858 ENSRNOT00000090437 3 1 1 60 X 15162445 15162467 AGAGCATATGGAAGGATACAGAG 59 15162407 15162425 TGTCTGTGTCATCGTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909412 ENSRNOG00000042543 ENSRNOT00000076906 1 1 1 80 5 77432995 77433016 GAGTGCAGGGAACTATATTTGG 59 77432248 77432956 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 1 1 1 87 1 214446760 214446782 GCCAGACTAGGAACACCAG 60 214446689 214446707 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000055913 ENSRNOT00000087875 2 1 1 60 1 198019479 198019500 GGAAGTAGGAGTTGGAATAGGA 59 198019440 198019459 TGCAATACTAGGTCGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004437.1 ENSRNOG00000060573 ENSRNOT00000089410 3 1 1 79 1 142893755 142893773 CACATTCATGCATGCACAC 58 142893694 142893712 GCATGAGTTTGTGAGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.2 ENSRNOG00000054700 ENSRNOT00000085743 2 1 1 81 17 44533639 44533661 GATGCTTTGCATGATGATAAGG 58 44533572 44533593 CCTCACTTCTCTATTTCTCCAC 58 Novel Rattus norvegicus 81 AABR07027872.1 ENSRNOG00000055197 ENSRNOT00000078555 3 1 1 96 17 47876025 47877428 AAAGAAAGTTGCTCTGAGTACC 59 47878021 47878040 AGTATAGTAGGCAGAGGTGC 58 Novel Rattus norvegicus 81 AABR07027878.1 ENSRNOG00000052387 ENSRNOT00000091880 2 1 1 82 17 48001073 48001091 GTCTTTCCATCTGCACCAC 59 48001006 48001029 TCTGAGCTTTGTAAGAGTGGT 59 Novel Rattus norvegicus 81 SNORA18 ENSRNOG00000058734 ENSRNOT00000088369 1 1 1 60 3 151043619 151043638 CTTGCAGAGTAACTCTGTGG 58 151043578 151043602 CTTCTGACAAACCTAGACATAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030156.1 ENSRNOG00000046186 ENSRNOT00000074522 3 1 1 81 10 72247404 72247424 CTAAGTCGTCTCAAAGTTCGA 58 72247341 72247362 ATTTGCCATGGAAAGTTGTC 57 Novel Rattus norvegicus 81 AABR07067878.1 ENSRNOG00000054699 ENSRNOT00000088268 1 1 1 90 9 70311875 70313273 ACAAAGAGTTGCAGGACCA 60 70313327 70313345 TTCCCACAATGAGCAGGAG 60 Novel InUTR Rattus norvegicus 81 AABR07067878.1 ENSRNOG00000054699 ENSRNOT00000088268 2 1 1 91 9 70311875 70313273 ACAAAGAGTTGCAGGACCA 60 70313328 70313346 ATTCCCACAATGAGCAGGA 59 Novel InUTR Rattus norvegicus 81 AABR07057946.1 ENSRNOG00000058406 ENSRNOT00000067707 3 1 1 60 7 95020077 95020097 TTCGGAAATTTGCCATGAAGG 60 95020119 95020137 TTGAGCCTGGTGTCTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076321 1 1 3 81 6 104467609 104469437 TTTCCCTTCCACTGGAGTG 59 104469481 104469500 CAGGCACCCTATTCACTAGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061894 ENSRNOT00000091874 1 1 1 60 2 102458347 102458365 CCTAGAAGCATTGCAGCAC 59 102458305 102458325 GACATTACTTCTTCTCTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057878 ENSRNOT00000080539 2 1 1 60 12 2299876 2299896 CAGACTCGTCTTAAGTCAAGG 58 2299836 2299855 GTTTAGAGGCTCTAGCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060318 ENSRNOT00000084473 1 1 1 60 2 224561424 224561442 GAGAAGATTAGCATGGCCC 58 224561466 224561484 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102548479 ENSRNOG00000028202 ENSRNOT00000029433 2 1 1 90 X 58227868 58227886 AAACTTCCAGTCACCAGAG 57 58227939 58228129 TCCGTAATCTGAAAGAACGT 57 Novel Rattus norvegicus 81 AC123251.1 ENSRNOG00000039721 ENSRNOT00000060915 2 1 1 63 4 15698003 15698021 ACATGGAAACAACCCTGGA 59 15697956 15697974 GTGAAGCTTGCATCTACGG 59 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000060659 ENSRNOT00000092080 1 1 1 60 10 74764130 74764149 GCAGTATCGTAGCCAATGAG 59 74764171 74764190 CCCACTCCTTTCAATTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059171.1 ENSRNOG00000008946 ENSRNOT00000011839 3 1 1 60 4 6477492 6477512 GAGAAGGTGGATGTAGAACAG 58 6477452 6477470 TGGTCTCTGCCCTTTAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061470 ENSRNOT00000085919 2 1 1 60 2 185663517 185663536 GGAAGCATGATCTCAGAGGT 59 185663559 185663577 GCATCTGAAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057955 ENSRNOT00000085138 1 1 1 60 10 89570414 89570433 GAGTTGGAATAGGAGCTTGC 59 89570456 89570474 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059477 ENSRNOT00000081659 2 1 1 60 17 72214161 72214180 GTCAGTAGGTGGATGAGAGG 59 72214202 72214221 ATGTCCATAGGTCAGAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060891 ENSRNOT00000090304 3 1 1 60 14 23597254 23597275 TTAGCCTAGATGTGTTAACCCT 59 23597215 23597234 AGTCAGTTTCCCACATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060377 ENSRNOT00000086528 1 1 1 60 17 26541296 26541315 GTGTCTCCTTTCTCCTTTCC 58 26541335 26541356 TCTCCTTTAACCAAGTGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060641 ENSRNOT00000078084 2 1 1 60 14 92805283 92805303 ATATGTGTCAGTATGTGGCAG 58 92805243 92805262 TAGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053175 ENSRNOT00000083252 3 1 1 60 17 47502219 47502241 GATACAGAGAAGATTAGCATGGC 59 47502261 47502279 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007730.1 ENSRNOG00000018045 ENSRNOT00000024269 1 1 1 60 2 26086136 26086155 CATCATTGACTATGCCAGGA 58 26086176 26086196 CAGAATCGCATAGGAGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061385.2 ENSRNOG00000060843 ENSRNOT00000078142 1 1 1 60 4 121089073 121089095 GATACCTAACTGATCTAGTCCTG 57 121089115 121089133 AAGTGGTAGGCGACATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060691 ENSRNOT00000078391 2 1 1 60 14 44221186 44221210 CATGTACTAACACTGGAACATACAG 60 44221150 44221168 AATGTCATCCTTGCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 1 1 1 66 10 83536084 83536102 TTGGCATTAGTCACTTGGG 58 83536134 83536154 TACCAGAAGCCATGTACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030378.1 ENSRNOG00000060404 ENSRNOT00000080001 3 1 1 111 10 83313350 83313369 AATGTCCCAATCTCCCACC 59 83313442 83313463 ACAACAGACAGGTTTAATCTCC 58 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054088 ENSRNOT00000088488 3 1 1 60 2 14966521 14966542 ACAGATCTTGGAACAGATACCT 59 14966482 14966504 GCAAGAAGAGTAGCTGTTTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034366 ENSRNOT00000052489 1 1 1 60 14 59470600 59470618 CCCGATCTCATCTGTTCTC 57 59470641 59470660 CTCCATCCAAGTACTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058965 ENSRNOT00000088186 1 1 1 60 1 239841698 239841718 ATATGAGTCAGTAGGTGGCAG 59 239841658 239841678 CATAGGTCAGAACATTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.2 ENSRNOG00000060913 ENSRNOT00000082001 2 1 1 61 5 25773848 25773870 CAACAGATAGAGGCCTTATATCC 58 25773894 25773914 CCTGTGGTCTAACTTCTTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000053325 ENSRNOT00000087275 1 1 1 80 2 86963661 86963683 CCTGCTCAGTGGAATTTATACAG 59 86963722 86964193 CTTAGAGGAAGCAAGACCCA 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000059636 ENSRNOT00000086552 2 1 1 60 2 97100104 97100123 TCTTCCTGTGGTTTATTGGC 58 97100063 97100086 CTTCCAAATGGAATAGTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059636 ENSRNOT00000086552 3 1 1 60 2 97100124 97100144 AAGCAGATGCCTAAAGAACTG 59 97100084 97100106 CTCTATTGAAGTCCAGAATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059173 ENSRNOT00000083106 1 1 1 60 1 186497779 186497799 TATCCGGAGAAGTGTTACAGG 59 186497739 186497757 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006255.1 ENSRNOG00000036633 ENSRNOT00000054815 3 1 1 119 1 226038640 226038660 TTGAACTTTGTCCACATGGAC 59 226038742 226038760 CACCTTCCCAATGAGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC099360.1 ENSRNOG00000025214 ENSRNOT00000032728 3 1 1 60 4 7052741 7052759 GATGAACTCGCTGAAGTGG 59 7052699 7052718 CTATGCCTTTGATGAGGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118841.1 ENSRNOG00000033177 ENSRNOT00000043184 2 1 1 101 5 70463453 70463472 AGAGCCTGAAGAATTTGTGG 58 70463211 70463389 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 AABR07072546.1 ENSRNOG00000045578 ENSRNOT00000074537 3 1 1 80 17 29863004 29863027 AGATTTCACCTCACATGCGA 60 29862943 29862963 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076224 2 1 2 81 X 70440109 70440225 GGAACAACTTGCTAGATGGG 59 70440047 70440065 GACTGTTCGCACCATAGAG 58 Novel Rattus norvegicus 81 AC130391.2 ENSRNOG00000052593 ENSRNOT00000082798 1 1 1 90 17 43632745 43632763 TCTCAGTCTTCTTGGGCAG 59 43632673 43632691 GAACTCAACAAGCTGCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058596 ENSRNOT00000085604 1 1 1 75 17 1818383 1818401 GCTCACTTTGACAACACGT 59 1818326 1818344 TATATGCCAACCTTGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048303.1 ENSRNOG00000049272 ENSRNOT00000071563 1 1 1 81 5 71467631 71467657 CCAGGACTCAATGAAGAACCT 60 71467694 71467718 GAAGATATTTACTGGTCCTTTGAGC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054509 ENSRNOT00000077872 3 1 1 60 1 148033347 148033369 GATACAGAGAAGATTGGCATGAC 59 148033388 148033407 GAATGCTTCACGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056238 ENSRNOT00000084949 3 1 1 60 1 80155795 80155814 CGCTACCATGATCATGAAGG 59 80155837 80155855 ACATCTGGAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055386 ENSRNOT00000079619 2 1 1 60 1 188542966 188542984 GATTGGCAAAGCTGTCACC 60 188543007 188543026 GAACACTCCTGGTACAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056932 ENSRNOT00000088475 2 1 1 60 1 114186069 114186090 CCTCAAACAAGTTAAGAAAGGG 58 114186030 114186050 AGCAACCTTATTGAGTAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030798.2 ENSRNOG00000057734 ENSRNOT00000077158 3 1 1 82 10 104920776 104920794 GGTGGATACACCATTTCCC 58 104918388 104920730 GACTTGAACCTGGGATGAC 58 Novel Rattus norvegicus 81 AABR07061087.1 ENSRNOG00000052612 ENSRNOT00000084103 3 1 1 60 4 103761816 103761835 GAGAGTCAGCTTCCATCTCC 60 103761775 103761797 GTGATGCCATTACTATGTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059329 ENSRNOT00000091975 3 1 1 67 1 135581392 135581410 TTATCCATTGCACTCCGGA 59 135581343 135581361 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049159 ENSRNOT00000070837 2 1 1 60 1 262651449 262651468 CTGAACATGCCAGATCTCAG 59 262651408 262651429 CTCCTATCCAAGTTCTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844,ENSRNOT00000059261 1 2 2 60 13 78987056 78987075 GGATGAAATGGACGAGACAC 59 78985221 78985240 GCATGCTTCTCTAAAGAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022057.1 ENSRNOG00000060929 ENSRNOT00000086497 1 1 1 60 13 104816508 104816527 CCTGTCAGTTCTCTTCTTCC 58 104816550 104816568 CATCAGGAAGTAGGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015814.1 ENSRNOG00000043857 ENSRNOT00000069124 1 1 1 68 14 78549354 78549372 CCTTGTTGGAGGAAGTGTG 58 78549404 78549422 ACACTAGGCCTGGATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043287.1 ENSRNOG00000057292 ENSRNOT00000073554 3 1 1 81 19 27099258 27101167 AGCTCAACAACGTAATGAAGTC 59 27101206 27101227 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 AABR07050417.1 ENSRNOG00000054488 ENSRNOT00000087044 2 1 1 80 5 164319546 164348025 ACTCTACAGGGTTTCTTAACC 57 164319486 164319507 CTGAGCATAATTGAGACTTTCC 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055905 ENSRNOT00000079284 1 1 1 60 2 131853897 131853915 ATTGAAGATGTGGCTGCTC 58 131853939 131853957 GCTACTCTCATCTCTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.3 ENSRNOG00000059963 ENSRNOT00000083564 2 1 1 80 8 69507497 69507931 CTTATCCATAATCAGGATGCTCAC 59 69507161 69507184 CAGTTGACTGTTCCTATATTCCTG 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000056544 ENSRNOT00000084387 3 1 1 66 4 169403524 169403543 GTATTCAGTGCAGTTCAGGG 59 169403572 169403590 CGCCAATTTCAATGTTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056570 ENSRNOT00000084278 2 1 1 60 1 98727405 98727428 GATAAAGAGAAGATTAGCATGGCC 60 98727368 98727386 GATCGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000053589 ENSRNOT00000077827 1 1 1 60 10 66596142 66596160 CAGTCTCAACTGAGACAGC 58 66596183 66596202 GAGTCTAGTTTCACCACTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061133 ENSRNOT00000081008 2 1 1 60 4 102876822 102876840 CAGTAGGAGGCAGAGAAGG 59 102876780 102876799 TAGGTCAGGATGTTGGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061333.1 ENSRNOG00000052508 ENSRNOT00000079243 2 1 1 61 4 116912804 116912822 CAGTTTCTGGGCTGAAGTC 59 116912845 116912865 GACTGCAGAAGTTGAATTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.2 ENSRNOG00000060832 ENSRNOT00000082275 3 1 1 62 Y 1625135 1625153 AAGAAGTTAGACCGCAGGG 59 1625178 1625199 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060357 ENSRNOT00000078510 1 1 1 60 5 4705579 4705597 GGTTGGGCTGATATGACTG 58 4705537 4705555 GGTGCACATAGAACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059272 ENSRNOT00000083392 3 1 1 60 5 136057647 136057666 CGTGGAGAGGAACAATTCTG 59 136057688 136057707 AGTCCTGCTTAAACAGGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060796 ENSRNOT00000080599 3 1 1 71 12 12213902 12213921 TCTAAGGCGTGATTATTGCT 57 12213952 12213973 CTGTAGGAAGTATGCCATTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001037.1 ENSRNOG00000047117 ENSRNOT00000073945 1 1 1 80 1 35152080 35152102 AGATTTCACCTCACATGCG 58 35152018 35152036 TTCCTCCTTCTCCACATCC 58 Novel Rattus norvegicus 81 uc_338 ENSRNOG00000053704 ENSRNOT00000088668 2 1 1 90 6 110596647 110596665 CTGTGGTCAGGATAGGCAG 60 110596719 110596737 TCTAGAGGTGGTCACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054684 ENSRNOT00000084972 1 1 1 60 5 91360518 91360539 GAAACTATGTCTAAGCTCAGCG 59 91360557 91360578 TGTTGGGCTACTATTCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000055831 ENSRNOT00000088005 1 1 1 60 1 110521695 110521714 ATAGCTGTTGGTTTCAAGCA 58 110521735 110521755 GAATAGCCAACAAACTACAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060989 ENSRNOT00000078706 3 1 1 63 1 214429409 214429427 ATCCTAATCCCTGCTGGTC 59 214429454 214429472 CTAGGATGCTCTGGTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056604 ENSRNOT00000091059 1 1 1 60 14 92144155 92144173 CCAAGATGAGGCTCATCCA 59 92144113 92144131 CTGCCTTCAGAGGAGTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009373.1 ENSRNOG00000011429 ENSRNOT00000015194 2 1 1 88 2 94903192 94903211 AAACTTACCAGAGGGAGCAC 60 94903054 94903141 CTTTCATGACGCTGAGCAC 60 Novel Rattus norvegicus 81 AABR07072872.1 ENSRNOG00000028492 ENSRNOT00000029710 2 1 1 60 3 59516473 59516494 CTCCCTCTATCATCATGTCCTC 59 59516515 59516533 GAACTCTCAGCTGTCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000086063,ENSRNOT00000058552 2 2 5 82 2 123616613 123616633 GCTTACCATTGATTACACCTG 57 123616674 123617702 CTTCCATTTCTGACAATGACTG 58 Novel Rattus norvegicus 81 AC242055.2 ENSRNOG00000058897 ENSRNOT00000079141 3 1 1 71 Y 1252659 1252679 CCTGAAAGCTTCTAGCTTCTG 59 1252711 1252730 CAGCAATAACTCTCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058751 ENSRNOT00000083673 2 1 1 60 12 2164048 2164066 TGAGTGCTAGAGCTGATCC 59 2164090 2164108 GAGGACAGGAAGAGGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060316 ENSRNOT00000079329 2 1 1 60 5 20882071 20882089 ATAGCTGCTGTGTTACCTG 57 20882109 20882131 CCTGAGTGTAAACATAACCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060316 ENSRNOT00000079329 3 1 1 60 5 20882110 20882131 AGAGGTTATGTTTACACTCAGG 58 20882150 20882170 GTTGGGTTACTACTCACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040938.1 ENSRNOG00000005402 ENSRNOT00000007173 3 1 1 85 X 115269630 115269649 GCGATTTGACCGAGATTCTG 60 115269695 115269717 CACATAGTCCCTTGGTAGAGG 59 Novel Rattus norvegicus 81 ENSRNOG00000043128 ENSRNOT00000040476 3 1 1 81 X 105501529 105501550 GATAACAATGTCATGGCTAAGG 57 105501592 105501652 CATTGTCCTTAGCCACAGG 58 Novel Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 3 1 1 61 6 93357155 93357180 CATATCTAGATACATGGGACTGTG 58 93357198 93357218 CAAATGAAGAGTCACGAAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061044 ENSRNOT00000077686 2 1 1 61 5 50252855 50252873 GTGTCAGTAGGTGGCAGAG 60 50252895 50252916 GTTCACAGGTCAGAATACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068248.1 ENSRNOG00000055670 ENSRNOT00000078129 1 1 1 80 9 92625501 92625522 TCTGACTTACAAGAGTGAAGC 58 92625439 92625457 TGCTGTATCATGCTGAACC 58 Novel Rattus norvegicus 81 AABR07035267.1 ENSRNOG00000046209 ENSRNOT00000070896 1 1 1 60 12 9001189 9001208 CCTGAACTCAGAGATTTGCC 59 9001231 9001249 TAGCACACGCCTTTAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061229 ENSRNOT00000091415 1 1 1 60 14 19795420 19795438 CACATGGGCATCAGTAGGT 60 19795378 19795398 GTCAGACCAGTGAGAATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058706 ENSRNOT00000083388 2 1 1 60 14 110455651 110455670 TTATCCATTGCACTCTGGGT 59 110455610 110455631 GTCAAGTTTCTCACATTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035103 ENSRNOT00000053226 1 1 1 60 12 42025734 42025752 CCCGATCTTGTCTGATCTC 57 42025692 42025711 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056382 ENSRNOT00000090631 1 1 1 75 14 86802606 86802624 ATTCCTACAGTGCTTGCCA 59 86802549 86802569 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2049.3 ENSRNOG00000054907 ENSRNOT00000089421 3 1 1 60 2 185438034 185438052 AGTTGCCTCCTGTCTTCTG 59 185437992 185438012 CATGTTTACACATGTGGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060186 ENSRNOT00000077664 3 1 1 60 14 32748903 32748922 GAGGAGAGGCTATGTCAAGG 59 32748942 32748963 GGCTACTAATCATTCAGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051642 ENSRNOT00000084378 3 1 1 60 14 55760095 55760113 TGTCACAAGTTTCTCAGCA 57 55760053 55760075 GTAATGTTCAGCATAGACCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA76 ENSRNOG00000051736 ENSRNOT00000082054 1 1 1 60 14 21268222 21268240 TTTGCTGGAGCATAACTGG 58 21268180 21268200 GTAGCTAGCAGTTAAAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000059820 ENSRNOT00000086696 3 1 1 60 1 165632872 165632895 CTATTTGGCAGAATGAGTAAGACC 60 165632835 165632859 TGAACCATAGTAAGTGGTATAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065139.1 ENSRNOG00000053311 ENSRNOT00000087462 1 1 1 80 6 111540161 111541612 TGTTGCATATCAAGCCTGTG 59 111541655 111541673 ACTGGACAAAGTCCATCCC 59 Novel Rattus norvegicus 81 AABR07035175.1 ENSRNOG00000050533 ENSRNOT00000073242 3 1 1 69 12 5942218 5942236 TTTCTCTGTGTAGCCCTGG 59 5942269 5942287 AAATCTCTGAGTTCGAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054969 ENSRNOT00000087399 2 1 1 60 14 7579675 7579694 CTTACCCATTGTCCTCTGGA 59 7579634 7579653 AGTTACTTTCTCACAGTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051388 ENSRNOT00000085533 3 1 1 60 2 231309304 231309322 TCAGTAGTAGGTGGCAGTG 58 231309344 231309364 TTCCTAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052576 ENSRNOT00000078989 1 1 1 60 2 151446246 151446264 GCTGGTATTTCCTCCACCT 59 151446286 151446306 CCAATTAAGCAGCTTCAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052576 ENSRNOT00000078989 3 1 1 60 2 151446242 151446262 ATAAGCTGGTATTTCCTCCAC 58 151446283 151446302 TTAAGCAGCTTCAAGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kmt2b ENSRNOG00000055525 ENSRNOT00000080842 1 1 1 80 1 89037445 89037464 CTCTTGTGTCAACTGCTTGG 60 89037206 89037404 TCACACTTCCGGTATACACAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000055478 ENSRNOT00000086437 2 1 1 60 2 169249283 169249302 CTCTCAGAGGTGTGAATCCA 59 169249242 169249263 CAAAGACTGATTAAGGCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056816 ENSRNOT00000084287 3 1 1 60 2 52529274 52529295 GAATGATGCAGACAAGACTAGC 60 52529316 52529334 CAAGAATTTGCATGTCCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059980 ENSRNOT00000085577 1 1 1 60 1 258163194 258163212 CTGCTTGCTTCACTAGCTC 59 258163152 258163173 GTGGCCATGCTAATTATCTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035260.1 ENSRNOG00000047251 ENSRNOT00000074111 1 1 1 60 12 8874007 8874026 CCTGAACTCAGAGATTTGCC 59 8873966 8873984 TAGCACACGCCTTTAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052529 ENSRNOT00000085507 3 1 1 60 1 98742927 98742948 ATACAGAGAAGATTAGCATGGC 58 98742888 98742908 GGATTGCTTCATGAATTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053179.1 ENSRNOG00000054519 ENSRNOT00000079990 1 1 1 80 3 95619617 95619639 AGATTTCACCTCACATGCG 58 95619682 95619701 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627,ENSRNOT00000091377 3 2 2 97 1 254531925 254531944 AGATCCAGAAATGAACCCAC 58 254532004 254532024 AGCACCATTTGCTAAAGCT 58 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055044 ENSRNOT00000080505 2 1 1 60 3 129406994 129407013 AACAGGGAAATAAGCTCCTC 57 129407036 129407054 GTGTCTCCTGCATTGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056552 ENSRNOT00000080847 3 1 1 61 1 228378575 228378593 CTCAGTCCTTCTCTTGTGG 57 228378618 228378636 CCAACCAGTCCAGATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD15 ENSRNOG00000052293 ENSRNOT00000085357 2 1 1 60 1 164440340 164440358 CACAGTTGTGAGCACTGTG 59 164440298 164440317 CAGACAAATGCCTCTTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056695 ENSRNOT00000081071 1 1 1 60 1 228358107 228358125 TACTAATGTGGCTGCTGTG 58 228358065 228358084 ACCGTAGTCTCTTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029732.1 ENSRNOG00000054498 ENSRNOT00000092113 3 1 1 123 10 48498088 48498109 TGTGGAGCCAGCTATAAGC 60 48498194 48498214 CTGTCACTTCAAAGAACCTGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059141 ENSRNOT00000087189 2 1 1 60 5 33274448 33274467 TTCCGTCAAGGGTATACGAG 59 33274490 33274508 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042623.1 ENSRNOG00000061644 ENSRNOT00000086313 3 1 1 81 19 359510 360699 CAAGAACAACAGGCCACAC 60 360742 360762 CAGAATTGACATGACCACCTC 59 Novel Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 3 1 1 61 1 158864586 158864604 CACCAACAATGGAGGAGTG 59 158864628 158864649 ACAGGTGACAACAGATACTG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA51 ENSRNOG00000052832 ENSRNOT00000077460 3 1 1 60 1 245898165 245898185 AGGAGGCAGAATAAACCTACC 59 245898125 245898143 TACAGACTAGGCACAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000222.1 ENSRNOG00000014431 ENSRNOT00000019345 2 1 1 60 1 5238787 5238808 GAAGGTAGCTGATGGTCTAGTC 60 5238748 5238767 CCTCTTACTGGCAATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002711.1 ENSRNOG00000041518 ENSRNOT00000063271 1 1 1 60 1 82585808 82585827 TGTGTATGTATGCATGTGCA 58 82585767 82585785 GTAAGGGCACATGCATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.2 ENSRNOG00000052769 ENSRNOT00000089249 3 1 1 157 X 134021347 134021483 TAAGACCGAAGGTGAGAACG 60 134021197 134021218 GGCTAGGGAGTCATACATTCTC 60 Novel Rattus norvegicus 81 AABR07041949.1 ENSRNOG00000058173 ENSRNOT00000083615 2 1 1 81 X 144036670 144036688 CACATGAAGGAGTACCCGG 60 144036606 144036625 CCCTATCTTGAAGCAGCGT 60 Novel Rattus norvegicus 81 AABR07010575.1 ENSRNOG00000051881 ENSRNOT00000079366 3 1 1 86 2 141078566 141078586 TGAAGTTATGTGATGGGAGAG 57 141078499 141078519 AAACAAACAAGAGTCTCCCT 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000052468 ENSRNOT00000077257 3 1 1 60 1 76751051 76751073 GATACAGAGAAGATTAGCATGGC 59 76751093 76751111 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000061093 ENSRNOT00000089597 2 1 1 61 5 136063970 136063991 CAGATCGTATAAATCTTTCGCC 58 136064012 136064031 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052179 ENSRNOT00000080671 2 1 1 60 1 190936429 190936452 GAGTTGTTCTTATATCAGTCAGGG 59 190936392 190936413 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036513.2 ENSRNOG00000059134 ENSRNOT00000078837 2 1 1 63 12 45801629 45801649 CACACTCATACACATTCACAC 57 45801586 45801605 AGTGTGAACGTGTATGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052960 ENSRNOT00000086153 2 1 1 61 2 30166712 30166733 CAAAGAGGAGTTCTCATTAGGT 58 30166755 30166773 TTCCCAACAGGTTAAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052261 ENSRNOT00000086384 2 1 1 60 7 36005024 36005042 GGTGGTCCTGTTCTTCCTC 60 36005064 36005084 GAGAGTATAGCACTTCGAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 3 1 1 71 X 123024324 123025426 AAGCCATGACTTCTGAAGG 57 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA15 ENSRNOG00000057181 ENSRNOT00000090452 2 1 1 60 3 112236305 112236325 GGGCTACACATTTAAAGCCAG 60 112236265 112236286 ATCAGCCATCTTAAAGGAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0853.1 ENSRNOG00000051292 ENSRNOT00000076046 3 1 1 81 13 80392526 80392940 GGGAGATTACCGAGGAAGG 59 80392463 80392481 CGAGATACACCACGAAGCA 60 Novel Rattus norvegicus 81 U5 ENSRNOG00000058970 ENSRNOT00000087158 3 1 1 60 13 111458197 111458216 GATCGCATAAATCTTTCGCC 58 111458237 111458257 TGACTCAGATTTGTTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055876 ENSRNOT00000087417 3 1 1 60 9 67474113 67474133 TACCCTGTGTATATCTCAGCC 59 67474073 67474093 TACCCATTCACAATACAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052399 ENSRNOT00000086838 2 1 1 60 13 89209401 89209421 CACTGAGAACATTAGCATGGC 60 89209361 89209382 GTAGATCGCTTTATGAATGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052399 ENSRNOT00000086838 3 1 1 60 13 89209406 89209424 CGGCACTGAGAACATTAGC 59 89209364 89209383 GATCGCTTTATGAATGTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060515 ENSRNOT00000089367 2 1 1 60 9 66441702 66441723 CTGTTTCATGTATATCCCTCCC 58 66441743 66441762 TGGGTTAAAGGTGTTGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016883.1 ENSRNOG00000057354 ENSRNOT00000088531 1 1 1 60 15 3267471 3268314 CTGCATTCATATGAATGGACAC 58 3268541 3268560 GCTTTCTCCATTCCTTTGTC 57 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000059917 ENSRNOT00000089815 1 1 1 60 5 173170953 173170972 ATGGAGATTAGCATGGTCCC 59 173170912 173170930 AACATGGAGTGGTTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067234.1 ENSRNOG00000056702 ENSRNOT00000083699 3 1 1 77 9 35966444 35966464 ATAAATGTGATCGCTTCTCGG 59 35966497 35966521 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051348.2 ENSRNOG00000060791 ENSRNOT00000078218 1 1 1 80 3 5305934 5306039 TTACTTCACACTGTGGATGTG 58 5306079 5306099 CTATTTAAGTAGGCCACACCA 58 Novel Rattus norvegicus 81 AABR07048637.1 ENSRNOG00000059056 ENSRNOT00000088086 3 1 1 80 5 85852913 85852936 GAGATTTCACCTCACATGCG 59 85852852 85852871 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057287 ENSRNOT00000086949 2 1 1 60 1 184390203 184390221 ATGTGTCAGTAGGTGGCAG 59 184390161 184390181 TTCCTAGGTCTACACTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017812.1 ENSRNOG00000057587 ENSRNOT00000081826 3 1 1 80 15 31282084 31282284 TCCAATTAAACTGGGTGAGC 58 31282327 31282345 AAGCTATGGATCCCTCTGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052697 ENSRNOT00000091627 2 1 1 60 1 88769593 88769615 GGTTATGTGAATAACTGCTCTCC 59 88769634 88769653 TGGGAAGAGCAGCTATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041720 ENSRNOT00000063473 2 1 1 60 1 28595961 28595979 GTCTACGGTCATGTGACCC 60 28596001 28596021 GCCTGTCTAGATTCTGAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099183.1 ENSRNOG00000055357 ENSRNOT00000080153 2 1 1 224 10 87503534 87503552 CTAGCTTCTGTGGCTTTCC 58 87503292 87503310 TAGTCTGACAGCAGGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045327 ENSRNOT00000070594 3 1 1 60 1 87611972 87611992 ATGTGAACTCAGAAGCTAGCA 60 87611932 87611952 GTATTCCTGGGAAGTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031150.1 ENSRNOG00000058829 ENSRNOT00000081315 1 1 1 60 18 1758523 1758544 ATGAAGAAGATGTACTGGGAGG 59 1758566 1758584 TTAACAGGCAGATCCACGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054921 ENSRNOT00000085121 2 1 1 60 1 21165712 21165730 GTGCATCAGTAGGTAGCAG 58 21165753 21165772 ATGTTCACAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053158 ENSRNOT00000090056 1 1 1 60 1 128534868 128534888 AGTCACTTTGGGAGTATATGC 58 128534828 128534846 TCTCCAATGTCCCTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076666 2 1 3 114 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208416278 208416296 TGAAAGACCCTTGTTGCCT 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102547954 ENSRNOG00000051364 ENSRNOT00000076931 2 1 1 83 10 70134367 70134386 AACCTTAAGTCGGCTTTGTG 59 70133707 70134321 TGATGAAAGGGCTGGACTC 59 Novel Rattus norvegicus 81 AABR07032385.1 ENSRNOG00000057933 ENSRNOT00000091026 2 1 1 60 18 63664878 63664901 CCTGGTCACAAAGATACAAATCTC 60 63664841 63664862 CTCATGTTCCTCAGAAACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054005 ENSRNOT00000080492 1 1 1 61 1 2720334 2720353 ACGATACAGAGAAGACAGCA 59 2720377 2720395 GGAACACGTCACGATTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056613 ENSRNOT00000082781 2 1 1 60 14 64848282 64848303 CATTCTGGTTGCTACATTTGAC 58 64848321 64848342 AACAAGATCAGCTGAATCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053685 ENSRNOT00000090956 1 1 1 60 4 97774280 97774300 AAACTAGTCTGTACAACCACC 58 97774321 97774340 AGAGTGCAATAGAGAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053685 ENSRNOT00000090956 2 1 1 60 4 97774280 97774301 AAACTAGTCTGTACAACCACCA 59 97774321 97774340 AGAGTGCAATAGAGAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017693.2 ENSRNOG00000053791 ENSRNOT00000085082 3 1 1 75 15 30157651 30157669 TTTCACTGGTGGTCCTGTG 60 30157054 30157073 AGAGATTCTGGGTTCTGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000055601 ENSRNOT00000079706 3 1 1 84 14 56859573 56859591 GAGTTTATCCGAGGCACGA 60 56859507 56859529 CTCAAAGAGAATCAGTAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0843.1 ENSRNOG00000051354 ENSRNOT00000076759 3 1 1 84 13 79330581 79330600 TCCTGTGGACTAGAAGACAC 59 79330645 79339743 AAATCACAGAGACACATCCAG 58 Novel Rattus norvegicus 81 AABR07057616.1 ENSRNOG00000047173 ENSRNOT00000074257 1 1 1 65 7 80411778 80411796 AGACACAGTTTCCACTGGA 59 80411822 80411843 GAAATTCTGTGCATACTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060253 ENSRNOT00000083836 3 1 1 60 13 34432187 34432205 GTGCATTAGTAGGTGGCAG 58 34432145 34432163 TACGGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0699.2 ENSRNOG00000051079 ENSRNOT00000076509 2 1 1 60 10 70223139 70223157 ATCCTGAGATGGTCGAGTG 59 70223097 70223118 GTCTTTCCTTGATTCCAAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027235.1 ENSRNOG00000051931 ENSRNOT00000079788 2 1 1 80 17 20619325 20619344 CTATAGCCAATGCCTACGTG 58 20619386 20619405 TGTGATGTGTTGAGAGTGTG 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000077061 3 1 2 81 X 73540169 73540187 GAAGACTCCAAGACGTCTC 57 73540231 73543972 TGAATGAAACTTCAGGTCCG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058074 ENSRNOT00000089453 2 1 1 60 6 61280756 61280774 AGAGGCTGTGTCTACACTC 59 61280714 61280734 CAGGAGTGTGAGATCAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021584.1 ENSRNOG00000041572 ENSRNOT00000063325 3 1 1 60 13 79425262 79425281 TTGGAAGAAAGCAGATGCTC 59 79425221 79425240 TAGCAGTTGCTCAATCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052768.1 ENSRNOG00000009952 ENSRNOT00000013190 2 1 1 88 3 74585589 74585608 TTGCTTCCTATACTGGTGGA 58 74585656 74585681 GACGTCTAATTTCATTCCACAG 58 Novel Rattus norvegicus 81 AABR07048059.1 ENSRNOG00000060049 ENSRNOT00000082554 1 1 1 60 5 58917740 58917759 TTTCTCACTCCCAGGAAGAC 59 58917699 58917719 AAGACAGAAACATCTGCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Herc1 ENSRNOG00000051671 ENSRNOT00000089336 3 1 1 80 8 72172935 72172956 TTCCCAGAGTCATTTACTGTCC 60 72172995 72174240 CCACTTGCTGTTATCCATGAG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044719 ENSRNOT00000069986 1 1 1 60 5 25704513 25704531 TGATCTCGGAGGTTAAGCA 58 25704554 25704573 TGAGAACTTCTGTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021734.2 ENSRNOG00000059957 ENSRNOT00000079363 3 1 1 60 13 88556911 88556929 CCACATGGGAGTTTCTCAG 58 88556953 88556971 CCATCCTGTTTCAGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000058929 ENSRNOT00000087868 1 1 1 60 13 78079659 78079677 CCGAAGGTGATTCCCTCTC 60 78079617 78079635 CCAAGGTGCTACATTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058618.1 ENSRNOG00000049992 ENSRNOT00000070829 3 1 1 60 7 128017768 128017786 TGAGATCCAGCTGTAAGGC 59 128017726 128017745 CCATAATGGGCTCTCCTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057161.1 ENSRNOG00000057380 ENSRNOT00000081416 2 1 1 80 7 58287352 58287373 CCAAGCTAAGAATGAATACTGC 58 58287411 58287436 TCAAAGTGGACTCAGTATAGAC 57 Novel Rattus norvegicus 81 AABR07019230.1 ENSRNOG00000058463 ENSRNOT00000084440 2 1 1 82 15 95185350 95185371 TGCATTCATGTTCTCCTATGTG 59 95053130 95185308 TATCTTTGGTACTTGTGCGC 59 Novel Rattus norvegicus 81 AABR07019230.1 ENSRNOG00000058463 ENSRNOT00000084440 3 1 1 84 15 95185350 95185371 TGCATTCATGTTCTCCTATGTG 59 95053128 95185307 TGTATCTTTGGTACTTGTGCG 59 Novel Rattus norvegicus 81 SNORA71 ENSRNOG00000059422 ENSRNOT00000077983 3 1 1 60 3 154847965 154847983 AAAGTGATCTTGGCTGCCT 60 154847923 154847942 TCTTTCGGCATGATTTCCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056985 ENSRNOT00000091798 3 1 1 73 5 129142754 129142772 ATGAGGTTTATCCGAGGCG 60 129142699 129142718 TATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058385 ENSRNOT00000091926 3 1 1 79 3 80018735 80018753 GTCAATGTTGTTGGCAGAC 58 80018796 80018814 TCTCGTCATCTTCTTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051656 ENSRNOT00000086648 1 1 1 60 10 86782135 86782157 ACTGGATCACTACAGAGATTAGC 60 86782097 86782119 CCTCATGAATTTGGATGAACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052382 ENSRNOT00000083334 2 1 1 60 20 22774549 22774567 AGAGAAGATTAGCATGGGC 57 22774591 22774609 GAAGGAAATGCTTCACGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056517 ENSRNOT00000085597 1 1 1 60 10 90220206 90220224 GGATGTGGGAACATTCTGG 58 90220248 90220266 AGCTTAAGTCAACCTGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059188 ENSRNOT00000085047 2 1 1 60 15 71071972 71071994 GATACAGAGAAGATTAGCATGGC 59 71071934 71071953 CTCCTCTTGTTCATTCGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069968.1 ENSRNOG00000056807 ENSRNOT00000073515 2 1 1 65 8 43142318 43142342 CATGTCTTACCAGATTTACAGTTCC 60 43142275 43142293 ACTGATGCACAGAACACAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059716 ENSRNOT00000085083 1 1 1 60 5 67219856 67219876 GCTATGTCACATATGGGACAG 58 67219816 67219836 CACTGAATGGAAACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057029 ENSRNOT00000082541 2 1 1 61 13 4115242 4115260 AGAGACTTTGACAGCCCAG 59 4115199 4115219 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098459.2 ENSRNOG00000053343 ENSRNOT00000085233 3 1 1 80 6 79235981 79236004 AGATTTCACCTCACATGCGA 60 79236045 79236065 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000043886 ENSRNOT00000069153 1 1 1 60 13 7160215 7160236 CACCTTGAATATCCCTGTTCTC 59 7160256 7160275 TGAATCAGATCCAATCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055397 ENSRNOT00000089969 2 1 1 60 7 30801062 30801082 TGGAATTAGGAGTTGGAATGG 58 30801101 30801122 GCAATACCAGGTTGATACATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052436 ENSRNOT00000086037 3 1 1 61 13 35558721 35558740 GGATACACAGAAGATCAGCA 57 35558764 35558782 GAACACTTCACGGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057073 ENSRNOT00000087802 1 1 1 60 13 83715711 83715732 CAAGTTAGATTGGTGGAAGAGG 59 83715672 83715691 TGTGGCTACTCTACATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060301 ENSRNOT00000090530 2 1 1 60 3 46265953 46265974 GATACAGAGAAGATTAGCGTGG 59 46265914 46265932 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051595 ENSRNOT00000091617 2 1 1 60 15 36604875 36604894 TCAGCAGCATATACACTCAC 58 36604912 36604935 CCTGCTATAAGGATTCATAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000054973 ENSRNOT00000090384 1 1 1 60 3 12011147 12011165 AATCCAGTGGTGAGCTGAC 60 12011189 12011207 CACATGTAGGACAACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002893.1 ENSRNOG00000056062 ENSRNOT00000087232 1 1 1 94 1 88516035 88516053 AGCTGTTCTCCTTGTTGGA 59 88513376 88515982 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 U6 ENSRNOG00000058332 ENSRNOT00000084623 3 1 1 61 6 29971614 29971632 ATACTTGATTCGGCAGCAC 58 29971571 29971589 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1764.2 ENSRNOG00000051085 ENSRNOT00000075961 2 1 2 73 2 157068880 157068898 AGAGAAATTAGCCGCAGTG 58 157068440 157068458 AAAGTTGCCTCAGAAGAGC 58 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000055551 ENSRNOT00000077812 2 1 1 60 19 34031305 34031325 CACCGTTACAGATTGAAGTCC 59 34031345 34031365 CTAGTCAAGTGCAGTAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000055021 ENSRNOT00000089427 2 1 1 67 3 6083981 6083999 TGACAAGGATGGAAGAGGC 59 6083932 6083950 CAAAGTAGGTGGCAATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054493 ENSRNOT00000080198 3 1 1 60 15 27739020 27739038 GAGTTCAATGGCTGAGGTG 59 27738978 27738997 GGAGAGTAGTCTGAATTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017781.1 ENSRNOG00000053359 ENSRNOT00000088134 2 1 1 92 15 31010918 31010936 TTACTCCTAGGCCTTCACC 58 31011129 31011148 GACTGTCAGAGATTGGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 U4atac ENSRNOG00000057270 ENSRNOT00000090418 2 1 1 60 13 34437819 34437837 ATAGTGAGGGCAGTACTGC 59 34437777 34437795 AAAGCAGAGCTCTAACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005533.1 ENSRNOG00000020477 ENSRNOT00000027758 1 1 1 60 1 185172294 185172315 CATGTAAACCATTTGATCCACC 58 185172334 185172354 GTAAACCTATGTGAGAAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019437.1 ENSRNOG00000046145 ENSRNOT00000074661 1 1 1 60 15 105371105 105371125 TTAGTGAACAAGGGTGAGAGG 60 105371147 105371165 CAAGACTACCAGCCCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU6-53 ENSRNOG00000053218 ENSRNOT00000085935 1 1 1 60 13 44049626 44049644 TAATACTGAGCCACCAGCC 59 44049666 44049686 TTTGTTAAACTCACTGGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052065 ENSRNOT00000086444 2 1 1 63 13 91465854 91465872 ATTGCTGCTGTGTCATGTG 59 91465809 91465831 CAATGAATGAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069336.1 ENSRNOG00000054772 ENSRNOT00000083752 3 1 1 87 8 17694319 17694337 TTCAGGTCAGACAACACTG 57 17690998 17694268 GTTCCATGGAACGAAAGGT 58 Novel Rattus norvegicus 81 AABR07001048.1 ENSRNOG00000049434 ENSRNOT00000073791 1 1 1 80 1 35526903 35526923 TGTTGGTGGAATGAACTGG 58 35526967 35526985 CTCAGGTAGTGCAATGTCC 58 Novel Rattus norvegicus 81 AABR07045321.1 ENSRNOG00000046812 ENSRNOT00000073740 1 1 1 64 20 42964159 42964177 TTGTTAACAGGCTGTCGTG 58 42964112 42964130 GATACCAGGCAAATAGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0744.7 ENSRNOG00000051183 ENSRNOT00000076632 1 1 1 60 X 73564191 73564211 TGAACTATCTGATGATGCCTG 58 73564230 73564251 AATGTTGCACTAATCTCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032413.1 ENSRNOG00000048770 ENSRNOT00000074068 2 1 1 62 18 64511582 64511601 CCCAGAGTCCTAACAATGTC 58 64511623 64511644 CTCTTCATGTATGAGGTCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000056759 ENSRNOT00000081439 1 1 1 76 15 58025902 58025920 TTTCATGGTGGGAGCTAGC 60 58025844 58025865 GGTTACTAGTTGTAAGTGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054434 ENSRNOT00000087507 1 1 1 60 19 54528519 54528543 GGCTAGACATTCACTATAGTAAGAC 59 54528558 54528579 CCCAGGTAAAGAACTAGTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000061191 ENSRNOT00000087347 2 1 1 60 X 152097493 152097512 ATACTGTAGGAACGGAGAGG 58 152097452 152097470 GGTCTGTAACCCTCTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035961 ENSRNOT00000054084 2 1 1 60 13 55895727 55895747 GAATGTGCCTGATCTCATCTG 59 55895687 55895705 TAAGTACTAACCAGGCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044080.2 ENSRNOG00000057601 ENSRNOT00000079469 3 1 1 82 19 56443735 56443753 TACCCAGAAGTCTCAAGCC 59 56443799 56443821 CTTTGACACGGGAAAGAAGAG 59 Novel Rattus norvegicus 81 ENSRNOG00000059492 ENSRNOT00000088689 3 1 1 94 1 60884984 60885543 GTCTCCCTGGGAATGACAC 60 60885597 60885619 GTTATTATTGCCTCACTCTCCAC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055039 ENSRNOT00000082441 2 1 1 60 15 41809798 41809818 TGTAAGTGCCTTTGAAGAGTG 59 41809840 41809858 CACTAGCTGGGTGAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051535 ENSRNOT00000086908 3 1 1 60 5 19832757 19832777 TGTATCTCTAGGTGGGAGAGG 60 19832717 19832738 TCACAGGTAAGAACACTTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000055609 ENSRNOT00000091914 1 1 1 61 7 140197940 140197958 TTCAAGCAGACGCCTAGAG 60 140197897 140197915 CTGTTGAAGTCCAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000061074 ENSRNOT00000077984 1 1 1 60 18 69588424 69588447 CTGACTTATCTCAGTTGATTGCTC 60 69588463 69588484 AACACGTAGAATAGGCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052218 ENSRNOT00000079398 3 1 1 60 7 121675547 121675567 TGTCACATCAGTAGGTAGCAG 59 121675507 121675525 CAGATCAGAACACTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056990 ENSRNOT00000083599 3 1 1 60 1 157687809 157687828 GTGTGACCGTAAACAGAAGC 60 157687768 157687788 CCTTAGGCAAACCCATATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061115 ENSRNOT00000081425 1 1 1 60 18 26873309 26873327 TAGAGGCATTGCAGATGTG 58 26873351 26873369 TTCTCTGCCACCTACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061115 ENSRNOT00000081425 3 1 1 61 18 26873308 26873327 CTAGAGGCATTGCAGATGTG 59 26873351 26873369 TTCTCTGCCACCTACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.2 ENSRNOG00000051768 ENSRNOT00000084482 2 1 1 144 6 139429025 139429316 AACTAAATCACTGCACAGACTC 59 139429531 139429549 GAGTTTCAGGGACCTTCCA 59 Novel Rattus norvegicus 81 SNORA69 ENSRNOG00000061195 ENSRNOT00000083166 2 1 1 60 X 123705907 123705927 GAGCAGGTAGCAATTACAGTG 59 123705867 123705886 CTTTCAGCAGGATTAATGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061787 ENSRNOT00000078826 3 1 1 71 X 113757302 113757320 TACAGGTGTGGCTACTGTG 59 113757249 113757270 CTGAGCATAGAAATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051439.1 ENSRNOG00000049599 ENSRNOT00000072773 3 1 1 60 3 11348212 11348233 AGTGTTTAGACTACCTGTTCAG 58 11348254 11348272 GCCTAACCAATGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.5 ENSRNOG00000051694 ENSRNOT00000089387 2 1 1 106 6 138744343 138744446 CATTTCCAACCTGTGTCCTG 59 138744256 138744274 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060935 ENSRNOT00000086606 1 1 1 60 15 86819401 86819422 TGGCTGTTATGTTACCTATGTG 58 86819362 86819380 AGCATAGGCATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060885 ENSRNOT00000081734 1 1 1 60 X 32924650 32924668 TGACGAAGACAGAAGAGGT 58 32924691 32924710 GGTAGGAATGCCTTAACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050489 ENSRNOT00000073598 2 1 1 82 6 142533974 142534075 TAACTGCAGGTGTCCACTC 59 142533910 142533928 GGACAACTTCACTGAAGCC 59 Novel Rattus norvegicus 81 Rn60_1_0430.2 ENSRNOG00000055166 ENSRNOT00000092014 1 1 1 60 1 41594401 41594419 ATGAGCAGGTGCCTAAGAC 60 41594442 41594461 TCGATGACCTATGACCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0430.2 ENSRNOG00000055166 ENSRNOT00000092014 2 1 1 60 1 41594335 41594356 TGTTCCAAACCCATCTTTAGTG 59 41594374 41594395 TGTATGTTTATTTCCAGGGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.4 ENSRNOG00000060552 ENSRNOT00000090133 2 1 1 106 6 139719186 139719289 CATTTCCAACCTGTGTCCTG 59 139719099 139719117 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054908 ENSRNOT00000088382 3 1 1 60 6 2876454 2876472 AAGCTCTGTGCTCTATCCA 58 2876412 2876431 TTGACTGAAAGACTGTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065688.1 ENSRNOG00000055807 ENSRNOT00000081540 2 1 1 102 6 139345520 139345623 CATTTCCAAGCTGTGTCCTG 60 139345688 139345706 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 AABR07061532.1 ENSRNOG00000046964 ENSRNOT00000075370 3 1 1 64 4 132351446 132351467 TGTATGTCTGTATGTGCATGTG 59 132351492 132351510 GCTGTACATGCTCATGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061228 ENSRNOT00000090649 3 1 1 60 20 10898483 10898504 GAACAGAAGGATGTCTTTCCTG 59 10898525 10898543 AGCCATTTACCCTTAACCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061642 ENSRNOT00000092004 3 1 1 73 20 9904360 9904378 CTGCCAGAGTAACGGAGAG 60 9904305 9904324 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000076019 3 1 2 113 17 13488437 13507859 TGGGTTTAAGAGATGTCTTCC 57 13516263 13516281 TACAACCTCATGCCAAAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000059196 ENSRNOT00000083107 1 1 1 60 4 174893974 174893994 CAAACAAGCTCTCAAGAAACC 58 174893934 174893955 TATGACTGCCTAATAGTAAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058374 ENSRNOT00000086059 2 1 1 60 15 19834014 19834035 AACACAGAGAAGATTAGCATGG 59 19834056 19834074 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057947 ENSRNOT00000081680 2 1 1 60 15 7715579 7715598 GTGTCATTAGGTGCACAGAG 59 7715538 7715557 TCATAGGTCAGGACACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056381 ENSRNOT00000088505 3 1 1 67 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146655 65146674 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057334 ENSRNOT00000080378 1 1 1 60 1 124480801 124480822 ATCTAAGGAACTTGACTGACCC 60 124480841 124480861 ACAGGGAAAGCACTAATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056306 ENSRNOT00000081580 3 1 1 60 15 74724236 74724256 ATATGTGCATCAGTATCTGGG 58 74724196 74724217 GGTCAGAACACTGAGTTTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051668 ENSRNOT00000082935 3 1 1 60 20 11037111 11037130 GCTAGAACCTCCAAACAAGC 59 11037153 11037171 GATGCCTCCATGAGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057594 ENSRNOT00000091250 1 1 1 60 20 8995510 8995528 CATACACAGGAACTGGGAC 58 8995551 8995570 ATTTGCATGTCGTCTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058368 ENSRNOT00000078564 2 1 1 69 20 45947774 45947792 ACCTGTGCATCTATGGGTG 60 45947824 45947843 GATGTTCACAGGTCAGAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061533.1 ENSRNOG00000048087 ENSRNOT00000075654 2 1 1 64 4 132360801 132360821 CACATGTATGTCTGTATGTGC 57 132360847 132360865 TACATGCTCATGCACATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058279 ENSRNOT00000087523 3 1 1 60 4 85177795 85177817 AGAGACTATGTCTATGCTCAGTG 59 85177832 85177855 CGTGTTAGGCTAGTAATCTTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055087 ENSRNOT00000091262 2 1 1 65 19 50683577 50683595 ATAGAAAGGAGGCAGAGCA 58 50683624 50683642 CTAGATCAGGCACAATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055087 ENSRNOT00000091262 3 1 1 65 19 50683576 50683595 TATAGAAAGGAGGCAGAGCA 58 50683623 50683641 TAGATCAGGCACAATGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC104053.2 ENSRNOG00000059424 ENSRNOT00000091921 2 1 1 60 18 53089868 53089887 AGCACACTCTACAGTCACAC 60 53089908 53089928 CAATAGGGTTAGCACAAACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032661.1 ENSRNOG00000026428 ENSRNOT00000031932 3 1 1 60 18 76340275 76340293 GAAAGACAACAGGGAAGGC 59 76340317 76340335 TTGAAGACAAGAGCCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058459 ENSRNOT00000091416 3 1 1 60 18 23172474 23172495 CCCTATAGTTGCAGATATGGCT 60 23172515 23172534 GATCTAGCTTCTGTCTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061235 ENSRNOT00000086652 2 1 1 60 5 455971 455993 CAAGGGTATATGAGTAGTTGTGC 59 455933 455954 TTGACCTTGATAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059462 ENSRNOT00000082232 1 1 1 60 19 9121360 9121380 GTGAGTCAGTAGGTGACAGAG 60 9121399 9121420 CATAGGTCATAACACTGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027388.1 ENSRNOG00000031706 ENSRNOT00000041892 2 1 1 60 17 27765454 27765474 TGGGACACTCTGAAAGAAGAC 60 27765414 27765433 ACTTTCTGCCCAATCAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052699 ENSRNOT00000083058 3 1 1 60 19 11151055 11151077 CGAGGCTATTGCTAATAGAAGAC 59 11151017 11151038 TGTCTCATCTGAATTCCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051652 ENSRNOT00000090389 2 1 1 62 19 32814401 32814419 TCTGAGGTGCGATTATTGC 58 32814445 32814463 ATTGCAAGTTGTCATGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059918 ENSRNOT00000087014 3 1 1 60 18 56799777 56799798 GGAACAATACGAAGATTAGCAC 58 56799738 56799756 TCACATCCTTGTCATGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059484 ENSRNOT00000088636 2 1 1 67 3 83540151 83540169 TAGAGGGATTGCAGGTGTG 59 83540200 83540218 TAGCCTCTGTCCTTTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051832 ENSRNOT00000088879 1 1 1 60 19 9718640 9718664 GAATCTGATGTCTTACTTGTAGCTC 60 9718681 9718700 CCCAGTTCTTTCCTCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000052950 ENSRNOT00000084400 2 1 1 63 5 104951925 104951944 CCAATTGTCACTAGACCTCC 58 104951881 104951899 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.3 ENSRNOG00000052328 ENSRNOT00000080060 1 1 1 60 9 45741835 45741854 GGTAATGCAGTTTGTTGAGC 58 45741794 45741812 TTTAACCAGCCGAATCGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056761 ENSRNOT00000091455 3 1 1 61 6 111479712 111479734 CGATACAGAGAAGATTAGCATGG 59 111479755 111479773 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060493 ENSRNOT00000084863 2 1 1 61 10 105548635 105548657 CGATACAGAGAAGATTAGCATGG 59 105548677 105548696 GAACGATTCACGAACTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036453 ENSRNOT00000054564 1 1 1 60 4 153099293 153099311 CACCCAATCTTGTCTGAGC 59 153099334 153099353 CCATCCAAGAGCTAACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059598 ENSRNOT00000079372 2 1 1 60 4 157768760 157768778 CACCTTTGTAGTGTACGCA 58 157768718 157768738 TGTCTCCTAGGTCTCTTAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055213 ENSRNOT00000078767 3 1 1 105 7 144090360 144090378 ATCCACAGGACAGGTACAG 58 144090447 144090465 CTCACCTCTAGAGGTGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047194.2 ENSRNOG00000060784 ENSRNOT00000086280 1 1 1 63 5 23358403 23358422 TGGACTAGAAATCCATTGGG 57 23358448 23358466 TTCTCTTACCGTAGTCGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058464.1 ENSRNOG00000052981 ENSRNOT00000089076 2 1 1 80 7 118473954 118474546 CTGCTATTCTTGAGGGAATCAG 59 118473895 118473914 CTCCTTCAAGGCATCTTCCT 60 Novel Rattus norvegicus 81 LOC100360355 ENSRNOG00000051726 ENSRNOT00000080172 2 1 1 95 X 155416759 155416949 GTGATCAAACTGTACAGGTCC 59 155417004 155417024 TCCACATAGGAATGGTATGGT 58 Novel Rattus norvegicus 81 AC128800.1 ENSRNOG00000047810 ENSRNOT00000071606 3 1 1 63 19 38158756 38158775 CTCCTCTTCCTCCTTCTCCT 60 38158799 38158819 CTACAAAGTATGGCAATCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000051396 ENSRNOT00000081382 2 1 1 65 6 133759960 133759978 CCAATGATGAGGAGCATGG 58 133760005 133760025 GTCCTCAGATTTCATAAGGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059651 ENSRNOT00000090556 1 1 1 60 4 139165547 139165566 TTCGGTCAAGGGTATACGAG 59 139165506 139165524 TCGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051910 ENSRNOT00000088797 2 1 1 60 9 49661582 49661603 CTGTGTCACATATGAGTCAGAG 58 49661543 49661566 CACTTAGTATAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.2 ENSRNOG00000052977 ENSRNOT00000078166 3 1 1 80 17 14553299 14553318 GTGAAAGTCATGCCCTTCTC 59 14552037 14553259 CTGAACGTCCTTGTAATTCTGG 59 Novel Rattus norvegicus 81 ENSRNOG00000061928 ENSRNOT00000085727 3 1 1 80 8 76774354 76775443 TGGTGGATTCCATCAATAAAGC 59 76775481 76775502 TTTCAAAGCCATAGATGTCCAG 59 Novel Rattus norvegicus 81 AC109942.1 ENSRNOG00000042851 ENSRNOT00000038079 2 1 1 60 7 15129733 15129753 TGGATCCAGCTTTATTCAGCA 60 15129775 15129793 TGCACCTAGTTGGGTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131848.1 ENSRNOG00000005898 ENSRNOT00000007732 3 1 1 80 3 76154754 76154775 CTCCATCTACTCTGTTACTCTG 57 76154813 76154838 TACATGGGAATGTGTAAAGGAC 58 Novel Rattus norvegicus 81 AABR07052812.1 ENSRNOG00000042248 ENSRNOT00000066227 2 1 1 93 3 76485148 76485167 TAAGCTCATGAACCAACCCA 59 76485072 76485094 ATCAATCAGGTTTGGTGTCAC 59 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000058009 ENSRNOT00000091706 1 1 1 60 11 47049251 47049270 ATTAAGCCGACCAGATTCCT 59 47049293 47049311 ATGCTGTTTGCAACCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055492 ENSRNOT00000090204 3 1 1 63 6 30232908 30232927 AGGAAGACTGGTCTTCTGTC 59 30232953 30232971 TGGTTTGGAGCTCTGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044448 ENSRNOT00000069715 2 1 1 60 11 58286604 58286623 TAAGGCCATACCACTCTGAC 59 58286641 58286664 CTGCTTAGCTTCTAAGATCAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057747 ENSRNOT00000088773 2 1 1 60 7 114975604 114975623 TCTAGAGCTGGACATTGCTG 60 114975640 114975664 ATATCCTTTCCTAGATTCCTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055047 ENSRNOT00000085051 1 1 1 60 9 31651492 31651514 GAGATTAGCTTGGTCTCTTAGTG 59 31651533 31651552 TTTACTGTGGAGCACATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064386.1 ENSRNOG00000058950 ENSRNOT00000078189 2 1 1 60 6 78586419 78586440 GAACAATAAAGGCCATGTTGTG 59 78586380 78586399 ACCTCAGTGGTTTCATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057408 ENSRNOT00000092015 2 1 1 60 4 99964363 99964384 ATACAGAGAAGATTAGCATGGC 58 99964324 99964343 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060151 ENSRNOT00000079213 3 1 1 61 4 52596417 52596435 GCATCAGTATGTGGCAGAG 58 52596374 52596393 GTTCTTAGGTCAGAACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061528 ENSRNOT00000090930 1 1 1 60 9 79592800 79592819 GAGTTGGAATAGGAGCTTGC 59 79592842 79592860 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063424.1 ENSRNOG00000060896 ENSRNOT00000082885 1 1 1 60 6 30639057 30639075 AGAGGGTGTAAATCTCGCG 60 30639099 30639117 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059325 ENSRNOT00000079105 3 1 1 83 7 135931708 135931726 CTTCTAGAGGCCTTGCAGG 60 135931643 135931661 TGAGTGTGGACATAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065532.1 ENSRNOG00000041530 ENSRNOT00000063283 3 1 1 63 6 133861041 133861059 ATTTGAAGGTGCGGTTGAC 59 133861083 133861104 AGTAGACCATGTGTCCTATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028336.1 ENSRNOG00000057298 ENSRNOT00000077094 1 1 1 60 17 65937656 65937675 CCATAGCTGTCTTCAGACAC 58 65937615 65937635 GAAGCTGACTTCTGTAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.2 ENSRNOG00000055056 ENSRNOT00000075587 3 1 1 80 4 173878386 173878407 AGAACACATGGAAACACTGG 58 173878325 173878344 TGAATTCTGTTGGTGAAGCT 58 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561,ENSRNOT00000076045 2 4 4 66 1 134885483 134885501 GATGGTAATGTGGTTGCCG 59 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07005581.1 ENSRNOG00000057396 ENSRNOT00000084774 3 1 1 80 1 189009460 189009483 AGATTTCACCTCACATGCGA 60 189009399 189009419 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000053870 ENSRNOT00000091353 2 1 1 70 7 107447957 107447978 TGATATGTCCTCTATCCAAGGA 58 107447908 107447926 GCAGACTCCTATTCCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058435 ENSRNOT00000090016 2 1 1 60 7 55606842 55606862 TTAGGATGTATTGGCACCCTC 60 55606878 55606902 CCACTAATTATGAAGCTGATGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058435 ENSRNOT00000090016 3 1 1 60 7 55606839 55606859 TACTTAGGATGTATTGGCACC 57 55606876 55606899 CTAATTATGAAGCTGATGTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053959 ENSRNOT00000087145 1 1 1 60 10 74757921 74757944 ACTAGAGAAGTTTCTCTGACTGTG 60 74757963 74757981 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000060059 ENSRNOT00000089500 3 1 1 60 10 65833126 65833145 CCTGGCTACAAATAACAGCC 59 65833085 65833104 GTAACCCATGTAGGGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033540.1 ENSRNOG00000054029 ENSRNOT00000082485 1 1 1 80 11 26721285 26721306 GACAGACAGATAGACCAATGGA 59 26721222 26721246 TCCTTTGTCAAACAAGTGACC 59 Novel Rattus norvegicus 81 AABR07042789.1 ENSRNOG00000023805 ENSRNOT00000030597 2 1 1 60 19 8943821 8943839 CTGAAGTGTTACTGCTGCC 59 8943779 8943798 GCAGTTTCTCAATCAGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076517 1 1 3 97 20 44616988 44617006 TGAACCTTCCATACAGGGC 59 44602994 44616927 AACTGCCTGACGAGTAACC 60 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076517 2 1 3 99 20 44616989 44617008 TGTGAACCTTCCATACAGGG 60 44602994 44616927 AACTGCCTGACGAGTAACC 60 Novel Rattus norvegicus 81 AABR07052500.1 ENSRNOG00000055605 ENSRNOT00000082936 2 1 1 176 3 58173397 58173425 GACCTCTTTCCTCTTTATTCTCAG 59 58173241 58173259 TTGGCTGGGAGAATGACAG 60 Novel Rattus norvegicus 81 AABR07052844.1 ENSRNOG00000051607 ENSRNOT00000045225 2 1 1 81 3 78508607 78508630 GATCTCTTAAGACTCAAAGTCAGG 59 78508548 78508567 AAGAGGATGACAACCAGGA 58 Novel Rattus norvegicus 81 AABR07071870.1 ENSRNOG00000058422 ENSRNOT00000077327 1 1 1 80 1 64079922 64080016 CCAGAAGAGGTCAAACCCA 59 64080289 64080309 CCATCCTTAGTTTCCATGTCC 59 Novel Rattus norvegicus 81 AABR07072758.1 ENSRNOG00000011472 ENSRNOT00000015252 1 1 1 60 2 190114414 190114433 ATCAAAGATCAGGAAAGCCC 58 190114373 190114391 AACCAGTTTCTTCCTCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000057716 ENSRNOT00000091943 3 1 1 110 16 57821917 57823181 CCTCAAACAAATATGACTCGAG 57 57823251 57823270 CTTTCGCCATCCATAAATCC 57 Novel Rattus norvegicus 81 AABR07042936.2 ENSRNOG00000057497 ENSRNOT00000079391 3 1 1 81 19 14943243 14945153 AGCTCAACAACGTAATGAAGTC 59 14943183 14943204 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 Olr1102 ENSRNOG00000059936 ENSRNOT00000080497 2 1 1 60 7 139802654 139802673 CCTTTCTCCCTCCTCTACAC 59 139802613 139802631 GGAAGCTGTAGATGACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054551.1 ENSRNOG00000058278 ENSRNOT00000085848 2 1 1 112 3 159863545 159863564 AGTGCAAGTCTACATCCACC 60 159863640 159863663 CGAGAATCCCACAAGGGAG 60 Novel Rattus norvegicus 81 AABR07067246.1 ENSRNOG00000047336 ENSRNOT00000075132 3 1 1 114 9 36475226 36475247 TTGGACCAGAGAAACACCTC 60 36475131 36475155 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07054247.1 ENSRNOG00000053547 ENSRNOT00000090559 1 1 1 78 3 145392900 145392918 TAGTTCTCGGAAAGCTCCC 59 145392964 145392982 ATGGTATCCAACAGCTCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058192.1 ENSRNOG00000057662 ENSRNOT00000088526 1 1 1 80 7 104197224 104197246 AGATTTCACCTCACATGCG 58 104197289 104197308 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 Rn60_10_0892.1 ENSRNOG00000053448 ENSRNOT00000077603 3 1 1 80 10 89260450 89260470 GTTCACTTGAAACTCATTCCC 58 89260512 89280795 GCACAGATGAGACTACCAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054449 ENSRNOT00000078587 1 1 1 60 13 28228962 28228983 AGGTGGTAAAGAGGAGAAAGAC 60 28229003 28229022 TTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059193 ENSRNOT00000091547 2 1 1 60 13 64233741 64233761 CTTCTGTCAAGGGTATTCGAG 58 64233783 64233801 TGAGAGCTTGTTTGCAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044631 ENSRNOT00000069898 1 1 1 60 13 83992108 83992126 CGATCTCACAAGCTAAGCA 58 83992066 83992086 CATATGTCAGTCTCCTACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011956.1 ENSRNOG00000060006 ENSRNOT00000091605 3 1 1 123 2 177829218 177829239 AACCAAACAAGTGAAGGAACTG 60 177829323 177829342 TGACTCCTGTCTCTTCCCT 59 Novel Rattus norvegicus 81 AABR07000121.1 ENSRNOG00000061316 ENSRNOT00000087443 3 1 1 81 1 1181388 1198770 GGGACAGAAGATACATACTATATCC 58 1198807 1198827 CTGAACACTGTCCTTCATAGC 59 Novel Rattus norvegicus 81 Rn60_20_0050.1 ENSRNOG00000057879 ENSRNOT00000089121 1 1 1 60 20 4910745 4910763 TACATGGCTCCCTTGACTG 59 4910785 4910805 CATGAGTTGTTTGAGATCCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066144.1 ENSRNOG00000052886 ENSRNOT00000088289 3 1 1 61 9 3965764 3965782 GTCCTGGATGATCTCTGCA 59 3922104 3922124 GCATTGTCTCTTTCCTCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070238.1 ENSRNOG00000022382 ENSRNOT00000036260 1 1 1 60 8 60618806 60618824 GGTCTCATCTTGCTCTGCT 60 60618949 60618969 TGAATATGAAGAGTGCAGCCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD50 ENSRNOG00000061827 ENSRNOT00000082179 2 1 1 60 8 96408750 96408771 TGATGATCCTATCCCGAATCTG 59 96408711 96408733 AGAAGCCAGATCTGTAACTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC091229.1 ENSRNOG00000059485 ENSRNOT00000079411 3 1 1 80 10 37482545 37482564 CCTATCAACCTGACAAGCAG 58 37482605 37484568 TTCAGTTAACCGTGAATTGGG 59 Novel Rattus norvegicus 81 AABR07070603.1 ENSRNOG00000057772 ENSRNOT00000085213 3 1 1 62 8 76677305 76677323 TATCTGGCACTGTGGTTCC 59 76677348 76677367 AGTGGTATTGTAGGACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054262.2 ENSRNOG00000056526 ENSRNOT00000087754 1 1 1 78 3 145648646 145648664 ATATCTTCAGTGCTGGGCA 59 145648708 145648726 ACCACAGAACCAACAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000034938 ENSRNOT00000053061 3 1 1 68 8 114124514 114124532 AGAAGCTAAGCAGGGTCAG 59 114124464 114124482 TACAGTGCCTGGTATTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070858.1 ENSRNOG00000050039 ENSRNOT00000072615 2 1 1 82 8 88341570 88341790 CGGGACCACAGAAATAGCA 60 88341506 88341524 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061858 ENSRNOT00000083567 1 1 1 60 8 85317348 85317367 TCAGTAGGTGACAGAAAGGA 58 85317307 85317326 ATATTCACCGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000054710 ENSRNOT00000086582 2 1 1 60 8 72701739 72701757 AGCAGTTCTTTCCTGTTGG 58 72701697 72701721 GATGCCAGATAGTGAATTTCTATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053779 ENSRNOT00000078942 2 1 1 61 8 51351552 51351573 CAACACAGAGAAGATTAGCACG 60 51351512 51351530 AAACGGTCCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055825 ENSRNOT00000083885 3 1 1 60 8 63239817 63239835 GGAGTTCTGGGCTGTAGTG 60 63239857 63239877 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363141 ENSRNOG00000056662 ENSRNOT00000087009 3 1 1 60 8 86817571 86817589 CATGTTGGAAGAGACGCAG 59 86817529 86817548 TACACTGTCCTGTGTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045487.1 ENSRNOG00000037628 ENSRNOT00000057081 3 1 1 60 20 48980284 48980304 CTAATTGGGCTGAATCATTGC 58 48980325 48980344 TGTTCCAGCATCAAGGTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026300.1 ENSRNOG00000050771 ENSRNOT00000073351 2 1 1 99 16 71075403 71075421 TGCTTCTTGTCACAACAGG 58 71075321 71075341 AATAATTCGGAATGCACGGA 58 Novel Rattus norvegicus 81 AC094221.1 ENSRNOG00000054338 ENSRNOT00000079863 2 1 1 82 20 1050064 1050284 CGGGACCACAGAAATAGCA 60 1050000 1050018 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 AC110824.1 ENSRNOG00000014899 ENSRNOT00000020076 1 1 1 65 5 75986266 75986284 ATGTTGCAATGGAAGCCAG 59 75986315 75986333 TATTGGCCACTTCCACTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC110824.1 ENSRNOG00000014899 ENSRNOT00000020076 2 1 1 66 5 75986265 75986284 AATGTTGCAATGGAAGCCAG 60 75986315 75986333 TATTGGCCACTTCCACTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.1 ENSRNOG00000051484 ENSRNOT00000090372 3 1 1 118 5 107323644 107323664 GTTACAAAGAGAACGCTCTGG 59 107323545 107323563 GTCAGATTTGACGTGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC107446.3 ENSRNOG00000058163 ENSRNOT00000073343 1 1 1 60 3 57697538 57697556 ACAAAGCTTCTGTAAGGCA 57 57697582 57697600 TTCCCAATCTGTTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD17 ENSRNOG00000052573 ENSRNOT00000077591 2 1 1 60 3 138393265 138393287 ACTACTGGTAAGAATGGCTAGTG 60 138393227 138393245 GGTGAGATGGAACCCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031166.1 ENSRNOG00000058649 ENSRNOT00000081055 3 1 1 82 18 2857319 2858513 ATCAGACACAACTTGGAACC 58 2857256 2857274 CAAACCCAAGGCATCAGAG 59 Novel Rattus norvegicus 81 AABR07014820.1 ENSRNOG00000058429 ENSRNOT00000077589 2 1 1 81 14 32673787 32673806 AAGGTCTGACTGAGTTTGTC 58 32672284 32673743 ATTCAGTTCTTCCCTTGCC 58 Novel Rattus norvegicus 81 AABR07046738.1 ENSRNOG00000052056 ENSRNOT00000078149 1 1 1 80 5 4275849 4275870 ACTCTATGTACAGTAAGACCGG 59 4275910 4297056 CCACTAGTACCTGATGTGGT 59 Novel Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000079012 2 1 2 71 14 36596310 36596328 CAATGACTGTGCCTTGGTC 59 36590323 36590341 GTCCAATATTCTGCTCGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 1 2 2 80 1 1441923 1441942 CCAAGTGCAATCTTTCTCTG 57 1440635 1441882 AGTGTACATCTTCTAGCATCG 57 Novel Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 1 1 1 60 5 7577080 7577453 GATCTCATCTTGGAAAGCAGC 60 7577474 7577493 TCTGTTCCTCAGAACATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062769.1 ENSRNOG00000054134 ENSRNOT00000087647 2 1 1 106 6 7180809 7182070 CATTGGAAGCTTTCATCTGGA 59 7180723 7180741 ATCTTGTATCCTGGGCTGG 59 Novel Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 3 1 1 69 14 44872774 44876788 ATCACCTCCCATAATCGCC 59 44872723 44872745 GGTGGGATATAATTTACTCCGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.1 ENSRNOG00000055975 ENSRNOT00000085296 3 1 1 80 10 41886302 41892505 CCATTCATGTACAGAGGCA 57 41892545 41892567 GATATACTCTAAGCTTCAGGGTC 58 Novel Rattus norvegicus 81 AABR07015467.1 ENSRNOG00000061025 ENSRNOT00000077556 2 1 1 65 14 58196931 58196950 AGATGATTGTGACCACACTC 58 58213142 58213161 TCTTCTGTGTCTTCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029769.1 ENSRNOG00000053841 ENSRNOT00000090454 1 1 1 95 10 49607216 49614164 CACAAAGGGCCCTTTAGGA 60 49607139 49607157 GTCTCTGGATGCTCCACTG 60 Novel Rattus norvegicus 81 AABR07047189.1 ENSRNOG00000053937 ENSRNOT00000078949 1 1 1 92 5 22975145 22975163 CTCTGTCGGAAGGAATGGG 60 22975218 22979542 ACATTAACCCTCAGCACCTC 60 Novel Rattus norvegicus 81 AABR07029901.1 ENSRNOG00000053970 ENSRNOT00000087110 1 1 1 80 10 58515409 58518430 CTCAATACCACAGTATCACTAAAGG 59 58515353 58515372 AAGAGCTCCATCACCTTGAC 60 Novel Rattus norvegicus 81 AABR07030086.1 ENSRNOG00000055755 ENSRNOT00000079968 1 1 1 80 10 66631600 66674100 AGGAATGTCCCTATCTAAGGT 57 66674140 66674160 AGGTAAACTCTTCCAGTTGAC 58 Novel Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 2 2 2 81 10 67111281 67127725 TCTCTGGAACTTACAGAATGGA 59 67111221 67111239 AGAAGAGCTGGTCTTCTGG 59 Novel Rattus norvegicus 81 LOC102550206 ENSRNOG00000058088 ENSRNOT00000088269 1 1 1 81 1 14508054 14508072 CTGTAGTAGGCTTGTGGCA 59 14508116 14508425 GCCACTGATTATGTCTGGGA 60 Novel Rattus norvegicus 81 AC115202.1 ENSRNOG00000055191 ENSRNOT00000087525 3 1 1 85 4 109419259 109419279 TGCCAAGAGTTGATTCAACAG 59 109419325 109461815 CTTGTCGTAGCTGTCATGTG 59 Novel Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 2 1 1 61 5 46306982 46314589 GTTAGCACAGAGTGGATTTCAG 59 46306942 46306963 TGGTGATTCTCCAAGACTACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015791.1 ENSRNOG00000059384 ENSRNOT00000090953 1 1 1 82 14 76474392 76474410 AAGTTCCAGGAATGTGCAG 58 76473227 76474346 TTTCATATGTGCGACTGGG 58 Novel Rattus norvegicus 81 AC136053.1 ENSRNOG00000057719 ENSRNOT00000081461 2 1 1 88 1 15247455 15247473 TTCCCAAGGTCTTTGGACC 60 15247525 15255751 CAGCAACAACCTGAAACCA 59 Novel Rattus norvegicus 81 AABR07015812.2 ENSRNOG00000054484 ENSRNOT00000084239 2 1 1 73 14 78398035 78398054 GCATGTGATATCAGAGTCGG 58 78393225 78393243 TCAAGAGAAGCCTCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030363.1 ENSRNOG00000051683 ENSRNOT00000079789 3 1 1 81 10 82582209 82582406 TACCAACCATTCGTTGTTCTG 59 82582148 82582166 TGGACAGTAAGCCTTCAGG 59 Novel Rattus norvegicus 81 AABR07015942.1 ENSRNOG00000057726 ENSRNOT00000078849 3 1 1 88 14 87140446 87140464 GTGATTCCAACGTGGTCAG 59 87141746 87141764 ACTCATGAGAGCTGTTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072169.1 ENSRNOG00000060787 ENSRNOT00000081040 1 1 1 108 10 84718651 84718669 GATTCTTCCCTCTGGCCTC 60 84714893 84714911 TTGAAAGATCTCGGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061385.1 ENSRNOG00000055513 ENSRNOT00000092084 3 1 1 80 4 121085023 121088290 GACCTTTCTACATCAGTGACCT 60 121088331 121088349 AGGATGCCTTCCTTAGTGG 59 Novel Rattus norvegicus 81 AABR07016578.1 ENSRNOG00000054531 ENSRNOT00000089463 1 1 1 109 14 105141425 105141443 CCAGGAAGACACTAGGTGG 59 105138324 105138342 CACAGAGCTTAAGAAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049002.1 ENSRNOG00000060976 ENSRNOT00000080603 3 1 1 81 5 99320051 99347211 CTTCATTAATAAGGGCACTTCAGG 60 99319993 99320011 TCACTGATCACCTCCAACC 59 Novel Rattus norvegicus 81 AABR07049032.1 ENSRNOG00000054520 ENSRNOT00000083921 2 1 1 63 5 100753049 100753067 GGATTCTTGAGGTCAAGCG 59 100757606 100757624 CAATGGAGCTGGTTGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001001.1 ENSRNOG00000060926 ENSRNOT00000086351 1 1 1 83 1 31937687 31938904 GTATCCCTCCAGTAGCAGC 59 31938951 31938969 GTTGGTTCTTGGCTCTCAG 59 Novel Rattus norvegicus 81 AABR07049033.2 ENSRNOG00000057129 ENSRNOT00000086258 3 1 1 60 5 100854669 100854687 GCTATGACATGTCAGCCAG 58 100852798 100852816 CGCAATGGACTTCTCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062020.1 ENSRNOG00000053503 ENSRNOT00000092107 3 1 1 61 4 156469096 156469114 TCCTCCACGATGACATGAG 59 156468284 156468302 CAGGGCAGTGAATACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.4 ENSRNOG00000052948 ENSRNOT00000079931 2 1 1 92 5 107289803 107289821 GCTGATTGCCTTCTGTCAG 59 107289877 107291658 CAGAAGTCCAGAGGGAGAG 59 Novel Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 1 1 1 60 10 102746146 102746167 CTCTTAACCATGAAGCCATCTG 59 102746185 102746312 CAGCTGGTATTCAGTTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062068.1 ENSRNOG00000058192 ENSRNOT00000091238 3 1 1 77 4 160206120 160206138 CTCAGGCATCGAGATCGAG 60 160207334 160207353 TGGCGTATATTTGCAGTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049474.1 ENSRNOG00000051764 ENSRNOT00000085186 3 1 1 104 5 122828864 122829141 CTAAGAGAAGTGCTGCAGC 59 122829209 122829227 TCAAGTGCACTGTTCAGGT 60 Novel Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 1 1 1 60 4 161342599 161387684 TTTGACCAAGCACAAGCTC 59 161387708 161387726 AATACTGCTCTGAGCCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017200.1 ENSRNOG00000055488 ENSRNOT00000077112 2 1 1 60 15 17651274 17651295 GAGTAGCCTTACTTCTCATCTC 58 17659257 17659275 CTGTGTTAGGTGCAGATGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030910.1 ENSRNOG00000058129 ENSRNOT00000082454 2 1 1 110 10 108668344 108668365 GTGCTTCTTGATTATGTCAGGT 59 108667854 108668273 GAGGTGCTCACATTCTGTG 59 Novel Rattus norvegicus 81 AABR07049631.1 ENSRNOG00000059783 ENSRNOT00000083930 1 1 1 81 5 131593510 131593528 CATATGGCAGCACGTACAG 59 131593147 131593465 ATCTGGTCCTCGTTTCCTG 59 Novel Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 3 1 2 73 15 20340997 20341997 AAATGTGGGTTTGGTGTGC 60 20342033 20342052 GATGGTAGGTCTGAGCAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033249.1 ENSRNOG00000055160 ENSRNOT00000089916 3 1 1 90 11 13072755 13108242 AAAGAAAGCACTTTGGAGTCAG 60 13108292 13108311 TCTGTCTGCTTCATCGTGAG 60 Novel Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 1 1 1 60 4 176075844 176076537 GCCAGAACCTCTACATCCA 59 176076561 176076579 TCACAGTTCTTGTAGTGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001416.3 ENSRNOG00000060413 ENSRNOT00000086422 2 1 1 89 1 42981277 42981295 GTGGAGGACTACAAGAGCA 59 42980745 42980921 GTCTACATCCTTCTTCAGGGT 59 Novel Rattus norvegicus 81 AABR07031537.1 ENSRNOG00000055852 ENSRNOT00000087406 3 1 1 80 18 19071448 19071466 GGGATGATCACAAGCAGAC 58 19067213 19071407 TTCTCCTAGATGTCCATACCTG 59 Novel Rattus norvegicus 81 AABR07001448.1 ENSRNOG00000059546 ENSRNOT00000087973 1 1 1 103 1 44818214 44818232 TTTGACTGAGCAGAGTGGG 60 44818298 44834903 TTCTTCTTTCTCTGCAGCCT 59 Novel Rattus norvegicus 81 AABR07031551.1 ENSRNOG00000053324 ENSRNOT00000085695 3 1 1 81 18 19619797 19619818 ACTCAGGTCTTCAGTAAGAAGC 60 19618306 19619757 TTCCCTTTCCAGATTACCCTG 60 Novel Rattus norvegicus 81 AABR07062528.1 ENSRNOG00000057693 ENSRNOT00000083722 1 1 1 102 4 181235364 181236675 CTTGGATTTGAGAGCTGGC 59 181236741 181236759 AACAAGTTTCTCTTCCGGC 58 Novel Rattus norvegicus 81 AABR07031665.1 ENSRNOG00000061811 ENSRNOT00000085143 1 1 1 98 18 24290778 24293912 CATGTATGTGCAGGAGCAG 59 24293974 24293992 GTACGGGAATGAAACGACC 59 Novel Rattus norvegicus 81 AABR07017825.5 ENSRNOG00000060541 ENSRNOT00000089248 3 1 1 60 15 31497867 31497887 CCTGGAGTGTTCATATGAGAC 58 31497995 31498016 TGCTGGAAGATTACAGAATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049815.1 ENSRNOG00000054075 ENSRNOT00000083167 1 1 1 80 5 139265909 139265930 CTGAACCTTCTACATTAGTCGT 58 139265343 139265868 ACGAACTTCCCTTGTTCTC 57 Novel Rattus norvegicus 81 AABR07001555.1 ENSRNOG00000060475 ENSRNOT00000082248 1 1 1 90 1 51525306 51525324 TTCACCATTTGCGGAACAC 59 51525082 51525252 ATCCATCTTGTCTGCTGCA 59 Novel Rattus norvegicus 81 AABR07017868.3 ENSRNOG00000055476 ENSRNOT00000080194 2 1 1 84 15 32020109 32020350 TTTGTCTGGATGTAATGTGGC 59 32020396 32020414 GTCCAGGGTGACTTCTTCC 60 Novel Rattus norvegicus 81 AABR07063152.1 ENSRNOG00000053643 ENSRNOT00000089442 1 1 1 109 6 19299787 19299805 TTCAGAATGGAGCAACTGC 59 19299876 19300733 AGCCTTATATCATTTGCCCTG 58 Novel Rattus norvegicus 81 AABR07001610.1 ENSRNOG00000055136 ENSRNOT00000082026 1 1 1 80 1 54224086 54287681 TTTCAGCATCAAATACCTGAGG 59 54224027 54224045 ACGTGCAGGTGATTTAGAC 58 Novel Rattus norvegicus 81 AABR07018059.1 ENSRNOG00000053491 ENSRNOT00000082495 1 1 1 81 15 37995482 38006320 TGAGCAAAGTTCCTCTAGCT 59 38006364 38006382 GAGCCTCCTGTTGTATCCT 59 Novel Rattus norvegicus 81 AABR07001700.1 ENSRNOG00000055830 ENSRNOT00000089308 3 1 1 81 1 55298849 55436473 GGGACCCTAAGGTTGAAGAG 60 55298787 55298806 TTGAGCAGACACTTGTTGTC 59 Novel Rattus norvegicus 81 AABR07018170.1 ENSRNOG00000061107 ENSRNOT00000085399 1 1 1 77 15 44774701 44774719 GAGTATGTGCTGAAACGCG 60 44775530 44775549 GAAACCATTTCTTCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AC141344.1 ENSRNOG00000054578 ENSRNOT00000089733 2 1 1 73 5 154431297 154431315 ACAAATCGGATGCAACAGC 60 154428921 154428939 CTCAGAATGCTTGCTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018198.1 ENSRNOG00000055062 ENSRNOT00000077737 2 1 1 80 15 46537668 46537686 CTACTGGGAGGTGAGAGTG 59 46537728 46547649 CTGTAAGGCATCATGTTCCAG 59 Novel Rattus norvegicus 81 AABR07050274.1 ENSRNOG00000053597 ENSRNOT00000086353 1 1 1 100 5 158973648 158973666 TGTTCTGTTACAAGCTCCC 57 158971330 158971348 GAACAGAACAGGCCAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AC107505.1 ENSRNOG00000056171 ENSRNOT00000080356 1 1 1 80 18 53458546 53458567 AACCCAGGATTAAGCATTATCC 58 53458607 53518825 AAGAAACATGCTGTGTCAGG 59 Novel Rattus norvegicus 81 AABR07032261.5 ENSRNOG00000057973 ENSRNOT00000088490 2 1 1 61 18 57544350 57544369 ATCCTCTGGGAATGGAAAGG 59 57545945 57545963 CTGGTGCAGTTCCTTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050391.1 ENSRNOG00000055061 ENSRNOT00000082166 1 1 1 72 5 163593752 163593775 GGAGACGTACAACAATCTATTGTC 60 163594671 163594689 TTGTTCCAAGACCTTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063654.3 ENSRNOG00000061233 ENSRNOT00000091337 2 1 1 83 6 40092195 40093220 GATCGGAAAGGACTTCTTAGG 58 40092132 40092152 CATGTTCATTTCTTCCCTGAC 57 Novel Rattus norvegicus 81 AABR07002258.1 ENSRNOG00000055983 ENSRNOT00000088155 2 1 1 66 1 70055226 70055244 GTCTTCATGCCTTTCCCTG 59 70055272 70071745 GGCTGGTACAATATGCATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063740.1 ENSRNOG00000052618 ENSRNOT00000077838 1 1 1 80 6 44586746 44614721 CACAGCTTTACAAGTGGCA 59 44614764 44614783 GTCAGGATTGCCACAATCAG 59 Novel Rattus norvegicus 81 AABR07018457.1 ENSRNOG00000051407 ENSRNOT00000078684 1 1 1 76 15 58726318 58726337 TGTTGCAGTCAGGAAATCTG 59 58727284 58727302 ATTCCAATAGCGCCTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050644.1 ENSRNOG00000056236 ENSRNOT00000087806 3 1 1 81 5 171914122 171914598 CCCATTATCAAAGCAAGGTGG 60 171914640 171914659 GTTCTGCCATACGTTGACAC 60 Novel Rattus norvegicus 81 AABR07002627.1 ENSRNOG00000060587 ENSRNOT00000080668 3 1 1 144 1 78112685 78147919 GAGAATGGGTTACAGGCGT 60 78148023 78148045 CACTCTTACCAAACCATTTCTCC 60 Novel Rattus norvegicus 81 AABR07051249.1 ENSRNOG00000057097 ENSRNOT00000081712 2 1 1 107 3 3434924 3438846 AGCTTCAAGGATCTTCCCTC 59 3438916 3438934 CTAGGTAGGACAGAGCCTG 58 Novel Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 1 1 1 60 18 71990620 72001707 GGATCCATTCTCTACCTCGG 59 72001730 72001748 TCTGCTTGCAATTCAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 3 2 2 80 3 4734836 4735903 TCATGAGGAAGGTGACCAC 59 4735947 4735965 TGGTCCTCTTCCTTACTCG 58 Novel Rattus norvegicus 81 AABR07064048.2 ENSRNOG00000052527 ENSRNOT00000090917 3 1 1 81 6 62294093 62309900 TGAGACTTGTATGTTGCAAAGG 59 62309939 62309960 TGCCCAAATTTCATTTCCTCTG 60 Novel Rattus norvegicus 81 AABR07032640.2 ENSRNOG00000061667 ENSRNOT00000079857 3 1 1 87 18 75694854 75694872 GAAGAGGCCTTAAGGAGGC 60 75693412 75694805 TCTTGAGCCTTCTTCCTTCTG 60 Novel Rattus norvegicus 81 AABR07032688.1 ENSRNOG00000061015 ENSRNOT00000081164 2 1 1 143 18 77177523 77177541 GAACAGTTGGTTGCTTCAG 57 77174829 77177416 TTTCAGTTCCCTTCTGCAG 58 Novel Rattus norvegicus 81 AABR07019155.1 ENSRNOG00000058799 ENSRNOT00000091404 2 1 1 82 15 91490844 91511356 AATGTATTGCCGAGAAAGGA 57 91511399 91511419 CGTATTAAGAGCACTTCTCCT 57 Novel Rattus norvegicus 81 AABR07051376.1 ENSRNOG00000057465 ENSRNOT00000087557 3 1 1 60 3 7033011 7033029 ACAGCTCCCAAGATTGACC 60 7033053 7033071 GGGCTTCTCTGACAGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019269.1 ENSRNOG00000052351 ENSRNOT00000084885 2 1 1 80 15 97396892 97420531 ACAGCATAGCAAAGCAGTG 59 97396830 97396851 TGACTATAGCTCTCCTTAGTGG 58 Novel Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 1 1 1 63 18 79311607 79312150 GATGGATGGGTGTCTCAGG 60 79311562 79311585 GTCAAATCCTATTCTTGTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064373.1 ENSRNOG00000059292 ENSRNOT00000088398 1 1 1 80 6 77394077 77394098 ATCAGAGATCTGATAAGTGCCG 60 77378731 77394038 ATCCCAGAGCAGTATTCAGAG 59 Novel Rattus norvegicus 81 AABR07019340.1 ENSRNOG00000053548 ENSRNOT00000086234 3 1 1 80 15 100246792 100246811 TTCTTCATCAATAAGGGCGC 59 100242955 100246753 CTTCTTTCCCATCTTCTCTTGTG 60 Novel Rattus norvegicus 81 AABR07051403.1 ENSRNOG00000055854 ENSRNOT00000079302 3 1 1 61 3 10543042 10543062 GAATCACTTCCTGTCTCTGAG 58 10543085 10544089 TTTGAGTTGGCAAGTCAGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07003001.2 ENSRNOG00000059068 ENSRNOT00000084767 3 1 1 80 1 92334467 92335266 GTCATATCAGGGCTGTAACAC 59 92335304 92335326 TAGTAATGAGGACCAATGGAGAC 60 Novel Rattus norvegicus 81 AABR07019437.6 ENSRNOG00000060490 ENSRNOT00000091703 3 1 1 82 15 105499752 105499770 CTTGGGAGCTAAACCAACC 59 105499814 105500936 TTACTAAGGGAGACCTGTAGG 58 Novel Rattus norvegicus 81 AABR07019437.4 ENSRNOG00000055566 ENSRNOT00000089537 2 1 1 122 15 105550885 105550905 TGCTCTGAAGTTGGACTACTG 60 105550989 105551927 GTAAGAGGATCGGGCAGAC 60 Novel Rattus norvegicus 81 AABR07064755.1 ENSRNOG00000060880 ENSRNOT00000079915 2 1 1 80 6 93876280 93877364 CTCCTGGCCAAGTTAACAC 59 93877404 93877426 AGTATCTGTAGTAGTTGCTCCTC 59 Novel Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 1 1 1 60 6 97206236 97206258 GAGATACGTGCCATCTTATTGTG 60 97205316 97206218 TCTGCTCAGAATGTTCAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033274.1 ENSRNOG00000059180 ENSRNOT00000080572 2 1 1 149 11 14773399 14773417 AACATAATCTGCCCTCCCG 60 14772798 14773286 GGAAGACAAGCCCTGAGAG 60 Novel Rattus norvegicus 81 AABR07019449.1 ENSRNOG00000059711 ENSRNOT00000086500 3 1 1 101 15 106195369 106195388 TTACCCAGGAGTTTGGTCAG 59 106155555 106195305 CTGAGGTGTAGCTTCCCTC 59 Novel Rattus norvegicus 81 AABR07033484.1 ENSRNOG00000059738 ENSRNOT00000089854 1 1 1 60 11 23815817 23815835 TTTGATCCATCCTGCAAGG 58 23796138 23796157 GGCAAATTGACTGAAAGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 2 1 1 60 3 25350866 25350885 GTGTTTCATCAAGGTTCTGG 57 25335866 25350844 TTCTCATCAGAACCATCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052048.1 ENSRNOG00000055081 ENSRNOT00000084688 1 1 1 75 3 33949912 33949932 GTTCAGGATGAATTCCATGCT 59 33949969 33951506 CCTGATGCTCAAGAGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021199.1 ENSRNOG00000061752 ENSRNOT00000088390 2 1 1 85 13 60313723 60313741 AATGGACTCCCTTCCTACC 58 60313789 60314035 TCATCTGCACCTTACAACAC 58 Novel Rattus norvegicus 81 AABR07021213.1 ENSRNOG00000055995 ENSRNOT00000086787 3 1 1 85 13 60825107 60825126 CCAGTGATATGGAGTCTCCC 59 60824901 60825060 CTCCTTGTATTCGATGCCAC 59 Novel Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 3 1 1 60 13 65747811 65750218 CTTCATGTTCAGAGCACCAG 59 65750236 65750259 GATGTTTGTAGGTAGCTCTATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052389.1 ENSRNOG00000055701 ENSRNOT00000083309 3 1 1 81 3 50816213 50816231 TAAAGCAGGGCAAAGTGTC 58 50816274 50817611 CACTTAGTTCTGACCTTCCTG 58 Novel Rattus norvegicus 81 AABR07052390.1 ENSRNOG00000057218 ENSRNOT00000086277 3 1 1 81 3 50857127 50858463 CATCCATGTCATTGCATATCAG 58 50857067 50857088 TGCTTCTATCCATGAATATGGG 58 Novel Rattus norvegicus 81 AC113858.1 ENSRNOG00000053686 ENSRNOT00000078479 3 1 1 61 13 68937803 68937821 ATGCTCACCAGACCTTCTG 59 68937846 68942324 GTGGAGACCTGAGAAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052502.1 ENSRNOG00000051686 ENSRNOT00000083298 1 1 1 98 3 58269479 58269498 CCCAGGAGATGAGTTGAGAG 59 58269559 58271371 ATTCTGAGAGCTGACTGGC 60 Novel Rattus norvegicus 81 AABR07003699.1 ENSRNOG00000053358 ENSRNOT00000090501 3 1 1 94 1 117630900 117630918 CATGAAGACAAGCCCATCC 59 117629626 117629646 CCTCCGTATTGTCTAGAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000086316 3 1 2 80 1 118076230 118076250 AGAAACTGAGACCTAGAAGGG 59 118076292 118076991 TTCACAGTGTAACAAGGCC 58 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000079357 1 1 2 85 1 118050498 118050516 AAGATGCTGCTATGGTCAG 57 118050563 118076989 CACAGTGTAACCTTTATGGGA 58 Novel Rattus norvegicus 81 AABR07034502.2 ENSRNOG00000060165 ENSRNOT00000083501 3 1 1 80 11 74257967 74257987 AATTAAGCTTCGCACACTCTG 59 74257235 74257927 TGACTGTTTGTGAAGTTCCCT 60 Novel Rattus norvegicus 81 AABR07004061.1 ENSRNOG00000051782 ENSRNOT00000090893 1 1 1 80 1 123585188 123585209 CTCACTCCTCTTAAGTCAACAC 59 123549366 123551992 GATCTGAAACCATATCCTGATGAG 59 Novel Rattus norvegicus 81 AABR07021714.1 ENSRNOG00000059942 ENSRNOT00000089304 3 1 1 97 13 87327812 87327831 GATTATTCCCTCGGGACAGG 60 87322978 87327758 CTAGTATCTTTACTGTTGGATGTGG 59 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 2 2 2 99 6 129000924 129000942 CCTGAGATTGTGATCGCCA 60 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 1 1 1 62 13 95698469 95702829 AAAGGTCTCCGTTCACAGG 60 95698425 95698443 TTACTTCTTGAGACCGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052730.3 ENSRNOG00000060414 ENSRNOT00000085553 2 1 1 60 3 71108013 71109787 AGAAGCTAGGTTACTGAAGACC 59 71107974 71107992 GTTTGGTGCTGAAGTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 2 2 2 70 1 131386723 131431806 CGGTGATACTACAACCACTG 58 131386672 131386690 AATCTCCCAGACCTTGTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022037.1 ENSRNOG00000056464 ENSRNOT00000079252 1 1 1 80 13 103719028 103719050 CTTAGATGTTCCTTTGGGAAGTG 60 103716430 103718990 TGTATTCTGGGATAACCTGGC 60 Novel Rattus norvegicus 81 AABR07022053.1 ENSRNOG00000056789 ENSRNOT00000084790 1 1 1 81 13 104469601 104469621 AGGGAAACTAAAGCAAACGAG 59 104469664 104470644 TGACAGCCTCTTGAATCGT 59 Novel Rattus norvegicus 81 AABR07035008.2 ENSRNOG00000054841 ENSRNOT00000087032 2 1 1 80 12 3216337 3216358 GACAAATTGGATTCGGAAGAGG 60 3216394 3249398 CCTTCATATCTTAAAGATCCACGC 60 Novel Rattus norvegicus 81 AABR07022072.2 ENSRNOG00000058959 ENSRNOT00000087282 1 1 1 60 13 105852680 105852698 TCACAAGTCTGTCTCCTGG 59 105847960 105847978 TCTAAAGGGCTCCAAACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC135766.1 ENSRNOG00000053578 ENSRNOT00000083972 2 1 1 106 12 7594375 7594394 CTACCACTGAGCTAAATCCC 58 7589957 7594306 CACTTCCAGTCCTGTTCTG 58 Novel Rattus norvegicus 81 AABR07004397.2 ENSRNOG00000054325 ENSRNOT00000077093 1 1 1 86 1 141209968 141209989 TCAAATCCTTCCTGAATCTGGA 59 141209718 141209921 TCTGACTGGCTTCTTCAGC 60 Novel Rattus norvegicus 81 AABR07053283.1 ENSRNOG00000059974 ENSRNOT00000083083 2 1 1 81 3 97133594 97133612 CAACTCAATATCCTGCCCA 57 97133433 97133549 GACTGAGATTCTCATCGGG 57 Novel Rattus norvegicus 81 AABR07065933.2 ENSRNOG00000059254 ENSRNOT00000079602 1 1 1 100 6 146981840 146981860 ATTTGGAGATGATAGAGCCAG 57 146981919 146987958 CATTTCTATGTTGAACACGAGG 58 Novel Rattus norvegicus 81 AABR07066529.3 ENSRNOG00000056941 ENSRNOT00000086135 3 1 1 69 9 10804991 10805010 TGGTGCTACAGCTTCTAACC 60 10804084 10804102 TAGGTTGTTCACGGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004530.1 ENSRNOG00000056445 ENSRNOT00000084442 2 1 1 82 1 147157922 147158115 ATAAAGGCCTTGGAATTGCT 58 147157859 147157879 CAAATTCTGCAAGGTCATGAG 58 Novel Rattus norvegicus 81 AABR07066748.1 ENSRNOG00000051413 ENSRNOT00000081772 3 1 1 80 9 14480190 14480209 CTTTGGAAAGGCAAACAGTC 58 14480251 14485730 CATTCCTAGATGTTGAGGCT 57 Novel Rattus norvegicus 81 AABR07053681.2 ENSRNOG00000056066 ENSRNOT00000088682 3 1 1 82 3 120114663 120116083 GAGTCAGTAATGAGGCTGG 57 120116129 120116147 TATACCTGTAGGCACTGGG 58 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000091253 2 1 2 159 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778555 21778574 GTAGGACTCACCTCCAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035778.1 ENSRNOG00000054206 ENSRNOT00000079605 2 1 1 80 12 22294183 22294202 CTCTTCTCAGGACATCCTGG 59 22294243 22294877 CACCATGAACTGTATCTGTCC 59 Novel Rattus norvegicus 81 AABR07053710.1 ENSRNOG00000053290 ENSRNOT00000078027 3 1 1 84 3 121564468 121566765 AAATCCTGACCAAAGATCAGC 59 121564404 121564423 ATGATGCGAATGAGTCTGGT 60 Novel Rattus norvegicus 81 AABR07066832.1 ENSRNOG00000053221 ENSRNOT00000086049 2 1 1 80 9 18443303 18443324 GACCATGAGACTAAATTCCCAC 59 18443363 18445114 TGCTGAGTCTCCTTACATGAC 60 Novel Rattus norvegicus 81 AABR07035779.1 ENSRNOG00000055147 ENSRNOT00000090947 3 1 1 80 12 22315481 22317706 GCTACTTCAAGGTACAGGAG 58 22317749 22317767 AGCGAATATTGTTGTGGCT 58 Novel Rattus norvegicus 81 AABR07066838.1 ENSRNOG00000055369 ENSRNOT00000089871 2 1 1 69 9 18818541 18820402 GCAGATGAATGGATGAGTAGG 58 18818492 18818510 ATGTTCTGTGGACCCACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024869.2 ENSRNOG00000060135 ENSRNOT00000087628 2 1 1 83 16 20154210 20154512 GTGTACATGGCAAAGGTGAG 59 20154146 20154164 CTCAGCAGGCAAAGATGTG 59 Novel Rattus norvegicus 81 AABR07024870.1 ENSRNOG00000054077 ENSRNOT00000091624 1 1 1 80 16 20231656 20231674 AAACATTGTCTCTGCTGCT 58 20231716 20232000 TCAAGATATCACCCATCACAG 57 Novel Rattus norvegicus 81 AABR07004876.2 ENSRNOG00000053276 ENSRNOT00000084807 2 1 1 79 1 164815956 164815975 GGGTCTTCTTCCTTGAAGTG 58 164823248 164823266 AAGGAGGACCTCCTAAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.1 ENSRNOG00000056032 ENSRNOT00000089026 3 1 1 99 12 22375083 22375102 AAAGGATCCTTTCAGTGCCA 60 22375162 22375275 ACTTCATAGTGCTGGAGACAC 60 Novel Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 3 1 1 65 12 22601987 22604866 GTGGGTTTCAAGAAGCCAG 59 22604893 22604913 TTAAACTCACACCTATGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025345.1 ENSRNOG00000060160 ENSRNOT00000084750 3 1 1 90 16 34496897 34496915 AGATCAAACTGCCTCTGCA 59 34494258 34496844 ATATCGATGAGCCTTCAGCA 59 Novel Rattus norvegicus 81 AC128610.1 ENSRNOG00000051795 ENSRNOT00000087917 1 1 1 80 1 185578909 185578928 AGGAAGATCCATGTCTTGTG 57 185578971 185626756 ATTCCCTTTGTTCCAGCAG 58 Novel Rattus norvegicus 81 AABR07067247.1 ENSRNOG00000060115 ENSRNOT00000079936 3 1 1 82 9 36488717 36488735 AAAGGAGAGGAGGACAGAG 58 36492627 36492647 CTGAGACATTTCTCCAGTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054292.1 ENSRNOG00000056483 ENSRNOT00000090611 3 1 1 85 3 146545837 146545855 AGACGTGCCTGTCTATTGG 60 146544739 146545789 CTGGCTGTAACAAGCATTCC 60 Novel Rattus norvegicus 81 AABR07072511.1 ENSRNOG00000054453 ENSRNOT00000078056 2 1 1 80 16 49163649 49163668 CATGCCATTTCTCAAGAGGT 58 49163709 49165480 ATCCATTCTCCACTGTTTCTC 58 Novel Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 2 1 1 102 12 33221229 33231277 ATCACATCTGTCGCTGAGG 60 33231343 33231361 GTCAAGTCTCAGGGACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036074.1 ENSRNOG00000054150 ENSRNOT00000087767 1 1 1 80 12 33520987 33521377 TGTTACAGAGTCTACCCATCC 59 33521419 33521437 CTCAGGAAGTTCTCCAGGG 59 Novel Rattus norvegicus 81 AABR07067456.1 ENSRNOG00000058462 ENSRNOT00000086954 1 1 1 121 9 46890409 46890428 GTAACTGAGAACTGCCAGAG 58 46890512 46891218 AAGTTGACACAGCTTCCTG 58 Novel Rattus norvegicus 81 AABR07005779.4 ENSRNOG00000056571 ENSRNOT00000085384 3 1 1 90 1 198168212 198168231 CTCAGTCTACACCGTACTCC 59 198164647 198168160 CTTTCTGACCATGTGATGCC 59 Novel Rattus norvegicus 81 AABR07026002.3 ENSRNOG00000056149 ENSRNOT00000088102 3 1 1 86 16 58707728 58709424 CAGAACCTTCAAATCTGAGTGTC 60 58707664 58707682 CTAGTCCTCCATGGCAGAC 59 Novel Rattus norvegicus 81 AABR07026012.1 ENSRNOG00000060807 ENSRNOT00000084522 3 1 1 66 16 58938474 58938492 GGACTTAGTGGCTGTGGAG 60 58937767 58937785 AACCAATTCTGTCTGCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036391.1 ENSRNOG00000055489 ENSRNOT00000086158 2 1 1 80 12 41593978 41593997 GAGATGAAATGCCTGTCTGG 59 41594039 41594965 CTCCAAAGAAGCTGTCTGTG 59 Novel Rattus norvegicus 81 AABR07005871.1 ENSRNOG00000061037 ENSRNOT00000088506 1 1 1 80 1 203452447 203452949 ACTCACAGATGGTTGGACC 59 203452385 203452403 CATGATGGGTCCAGTAGCT 59 Novel Rattus norvegicus 81 AABR07036407.1 ENSRNOG00000053908 ENSRNOT00000079592 2 1 1 91 12 42217409 42217427 TGTCTTTCCCACCATCCTC 59 42217046 42217064 TCCTCATCTTCTCAGGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036411.1 ENSRNOG00000057987 ENSRNOT00000088959 1 1 1 82 12 42388936 42388954 TTTGACCTCAGAGACCACC 59 42387618 42387636 TTTCCAATGCTCTGCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072945.1 ENSRNOG00000051892 ENSRNOT00000090476 2 1 1 80 3 156629632 156631322 TACTCAAATCACTTCAGCTGC 59 156631363 156631382 TAAACGTCCATGCTGTTGAC 59 Novel Rattus norvegicus 81 AABR07005949.1 ENSRNOG00000059505 ENSRNOT00000091989 1 1 1 80 1 208274727 208274745 GGAGGTCTACCACTTCTGG 59 208274788 208308094 CTTGTGCAGAATGTCCTCTG 59 Novel Rattus norvegicus 81 AABR07005965.1 ENSRNOG00000055312 ENSRNOT00000086951 1 1 1 80 1 209511020 209511041 GTACAGAGTCTATTTCTGGGAG 58 209508699 209510979 TGAGGATCAGTTAAGCCGT 58 Novel Rattus norvegicus 81 AABR07026246.1 ENSRNOG00000060471 ENSRNOT00000083782 2 1 1 61 16 69570518 69570536 TTAACTACCAAGCGCACAC 59 69571386 69571405 TTCTCCTCTTCCTCTTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036532.1 ENSRNOG00000053108 ENSRNOT00000090696 1 1 1 122 12 46964892 46971666 GAAGTGCGTCAAGTGATCG 59 46971752 46971770 ATCTGCCGTAGGTAACGTC 59 Novel Rattus norvegicus 81 AABR07005985.2 ENSRNOG00000059125 ENSRNOT00000089947 2 1 1 110 1 212146437 212146455 AGCTCACTGAAATTGTCCC 58 212146528 212148515 GATTCTGTCAGACGTGTCTG 58 Novel Rattus norvegicus 81 AABR07067852.1 ENSRNOG00000061019 ENSRNOT00000085370 1 1 1 80 9 67817150 67817168 AGTGCAGTCACTGTTACGA 59 67817212 67824365 GCATAGCCAGTTCCTTGTC 59 Novel Rattus norvegicus 81 AABR07036542.1 ENSRNOG00000058601 ENSRNOT00000078437 1 1 1 101 12 47842954 47842975 GGATAAACCAAGGCTCAAAGAG 59 47846999 47847017 CTAGGATCACAGAGGCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036637.1 ENSRNOG00000052488 ENSRNOT00000081683 3 1 1 85 12 50979106 50979842 TGCTGTGAATATCCCAGGG 59 50979891 50979909 CTGGTCTTGAACTCACACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026397.1 ENSRNOG00000059629 ENSRNOT00000084351 3 1 1 82 16 74986192 74986210 TATGACCCTAAGCGCTTCC 59 74986009 74986147 AACAACATTTCCTCGAGGGT 60 Novel Rattus norvegicus 81 AC111319.1 ENSRNOG00000058458 ENSRNOT00000082753 1 1 1 112 9 71386848 71387370 GAAATGATACACCAGGCCC 58 71387445 71387464 CAGCATGGATAACGTGAGAG 59 Novel Rattus norvegicus 81 AABR07026483.1 ENSRNOG00000054984 ENSRNOT00000085058 2 1 1 80 16 78273345 78273365 CAATTGAGCTGAAGTCCAGAG 59 78273406 78340658 CTCCTTGGGTCAAGACAGAG 60 Novel Rattus norvegicus 81 AABR07068044.1 ENSRNOG00000059671 ENSRNOT00000083737 2 1 1 80 9 79357292 79357311 GTTAACTGGGTGAAGAGTGG 58 79357352 79357835 TTCATGAGACGGTTATCAGAG 57 Novel Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 2 1 1 61 13 108021430 108021449 AAGATTTCAAGTGCTGTGGT 58 108021473 108032585 CATTCCTGGGAGGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 3 1 1 61 13 108021430 108021450 AAGATTTCAAGTGCTGTGGTG 60 108021473 108032585 CATTCCTGGGAGGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022108.1 ENSRNOG00000052739 ENSRNOT00000088993 3 1 1 80 13 108273602 108274868 TTTCTCAGGATGTGTCCCAC 60 108273541 108273562 AACCCTGATCTATAATGTCCCG 60 Novel Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000078709 1 1 2 78 3 174035647 174035665 CACATCTCTTGAGCTGCTG 59 174046850 174046869 AGATTCTTCTGGCTTCTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068094.2 ENSRNOG00000055588 ENSRNOT00000085866 3 1 1 80 9 83417711 83417731 GACCAACTGGATAAGTGATGC 59 83417208 83417669 TGGAAGTTTCTGATGCGGT 60 Novel Rattus norvegicus 81 AABR07037878.2 ENSRNOG00000052694 ENSRNOT00000084241 2 1 1 82 X 34688108 34689279 CTTCTGGAATTATCCTCCTCTG 58 34689320 34689340 CCACTTTCTGCACTTTAACTC 58 Novel Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 3 2 2 81 3 177390148 177390166 GACAAGCAGGAGAAGTGGA 59 177390210 177392116 CTTTCCCTTCTTCCTCAGGT 59 Novel Rattus norvegicus 81 AABR07006453.1 ENSRNOG00000052693 ENSRNOT00000084649 1 1 1 80 1 235023308 235056626 ATCATCCATGAAAGGTCCTCC 60 235056668 235056686 CATGGAAAGCCAAAGGCAG 60 Novel Rattus norvegicus 81 AABR07068203.1 ENSRNOG00000054773 ENSRNOT00000083335 3 1 1 88 9 90678605 90678624 TCTACTACATGGTCAGTGCA 58 90606941 90678555 GACTCCATTCTGGGTTTCTG 58 Novel Rattus norvegicus 81 AABR07006536.2 ENSRNOG00000057614 ENSRNOT00000080182 1 1 1 80 1 238932783 238932803 GGGTTTAAAGGTAACCTCCAG 58 238932842 238933411 TCTATCATCCAGTAGATGTGGC 59 Novel Rattus norvegicus 81 AC109891.1 ENSRNOG00000061821 ENSRNOT00000091991 3 1 1 80 7 2685135 2688853 CTGTTTGCAAGGCTCTACAG 59 2685074 2685096 GAAAGAGCTAGGTGTAGATTCAC 59 Novel Rattus norvegicus 81 AABR07068248.2 ENSRNOG00000060101 ENSRNOT00000079973 3 1 1 81 9 92547736 92548021 ACCAAGGACCAACAGATCC 59 92547673 92547693 AAGAGCCACAGTAGAGTTCAG 60 Novel Rattus norvegicus 81 AABR07068400.1 ENSRNOG00000053724 ENSRNOT00000078836 1 1 1 64 9 103249262 103250499 AAGATCCTGGAGAATGAAGAC 57 103249218 103249237 TTAAGAGCTTATTCGCTGGT 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07006685.1 ENSRNOG00000059944 ENSRNOT00000085934 2 1 1 68 1 246938188 246938206 AGGAATTCCTCGGTCTGAG 59 246927908 246927926 TTTCCATATGGGCTCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056330.1 ENSRNOG00000056314 ENSRNOT00000090134 1 1 1 82 7 22496870 22496888 CCTAAGCAAGGAGGTGGAC 60 22495674 22496828 CATTAATGGACCTTGTCAGACAG 60 Novel Rattus norvegicus 81 AABR07040267.1 ENSRNOG00000051827 ENSRNOT00000088177 2 1 1 81 X 96745702 96754807 CCTACCAGCTTTGTATATCATCTC 59 96745644 96745664 TTACTGGGCATTGGTATAAGC 58 Novel Rattus norvegicus 81 AABR07026969.1 ENSRNOG00000053948 ENSRNOT00000090380 2 1 1 86 17 7611045 7611067 AGTACTATAACCCAGTCACAGAC 59 7607110 7610999 GAATCACAGCAACACCTGC 60 Novel Rattus norvegicus 81 AABR07056438.1 ENSRNOG00000061363 ENSRNOT00000082493 2 1 1 94 7 25649917 25649935 GAAAGGCGTGGGAATTGTG 60 25574359 25649859 GGAACCTCTGAGGATCCAC 59 Novel Rattus norvegicus 81 AABR07068705.1 ENSRNOG00000061831 ENSRNOT00000078863 2 1 1 81 9 115570678 115570697 AGATGCTCTCCGATATCTCC 58 115569635 115570636 GCAGATGTCTGAGAAGATACC 58 Novel Rattus norvegicus 81 AABR07068810.1 ENSRNOG00000059433 ENSRNOT00000078089 2 1 1 80 9 120345167 120349510 CCAGTTGTGATGTAGGAAACAG 59 120349551 120349569 ATGACGGAATATGCACGGT 60 Novel Rattus norvegicus 81 AABR07027137.1 ENSRNOG00000058611 ENSRNOT00000078319 2 1 1 80 17 15109075 15111287 GTACTAAATGGGATACGGGAC 58 15111329 15111347 CAGTATTTCCTGCACAGCA 58 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000088140 3 1 3 80 8 5169029 5169051 GAGTATCCTGCTTCGAATAAAGC 60 5167512 5168989 TCACTAGCATCCTGCATGG 60 Novel Rattus norvegicus 81 AABR07069205.1 ENSRNOG00000054346 ENSRNOT00000091933 2 1 1 81 8 11831660 11837942 TGATCTCACCAGGGAAGGA 60 11831597 11831615 CTCACGTGACTCAGTTCCA 59 Novel Rattus norvegicus 81 AABR07042990.1 ENSRNOG00000060444 ENSRNOT00000078262 1 1 1 80 19 15633796 15635263 CTTCAGAGAACCCGGAAGG 60 15635307 15635325 TGACGTATCACTTCCGCTC 60 Novel Rattus norvegicus 81 AABR07027272.1 ENSRNOG00000051772 ENSRNOT00000089995 1 1 1 89 17 22263052 22263070 CCTTCCTCAGTAAGCCCTG 60 22253640 22263001 CTTTGACTGACAACAGAAGCA 59 Novel Rattus norvegicus 81 AABR07027347.1 ENSRNOG00000051991 ENSRNOT00000078832 3 1 1 61 17 25568573 25568591 TAGCCACACGATTAACCAG 57 25569056 25569074 GTAGAGGTGGGTGAAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057171.1 ENSRNOG00000061104 ENSRNOT00000078560 3 1 1 101 7 58622794 58622812 CAGTGGTGTAACCTGTTCG 59 58622877 58623773 GACAGACAGACCACTCCTG 59 Novel Rattus norvegicus 81 AABR07043106.1 ENSRNOG00000052466 ENSRNOT00000082702 3 1 1 85 19 21366271 21368334 GAACACAGTAACAAGTGTCCA 59 21366206 21366224 CAAGTAGGAGGCCTAGGTG 59 Novel Rattus norvegicus 81 AABR07057233.2 ENSRNOG00000057241 ENSRNOT00000089812 1 1 1 80 7 62202027 62202961 GTAGATGAAGTCTCAACTTGTCC 59 62203000 62203019 TGGATACTTCCTCAAGGCTG 59 Novel Rattus norvegicus 81 AABR07027476.1 ENSRNOG00000053846 ENSRNOT00000089320 1 1 1 80 17 32418503 32421227 CTTCCACATGGATGAGAAAGG 59 32418443 32418462 GTCTTTGAGGAGGACATTCC 58 Novel Rattus norvegicus 81 AABR07043365.1 ENSRNOG00000058666 ENSRNOT00000083526 3 1 1 84 19 27833479 27833498 GGTAATGATGGACACAGGAC 58 27834579 27834597 CCTGCACCTTGTTTAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027501.1 ENSRNOG00000055736 ENSRNOT00000090118 2 1 1 80 17 34542358 34546155 TGTCAACAGAAAGGCTAGCT 59 34542297 34542317 CATGTTCTTCAGAATGGGTCC 59 Novel Rattus norvegicus 81 AABR07043454.1 ENSRNOG00000055759 ENSRNOT00000083349 2 1 1 83 19 28706876 28707930 CATGTGGAATGTGGAAGGC 59 28707977 28707995 TCTCCTCTTCCTGATTGGC 59 Novel Rattus norvegicus 81 AABR07043510.1 ENSRNOG00000057214 ENSRNOT00000088827 2 1 1 68 19 28990487 28990506 CCCTGATGACAAACATCCTG 59 28990315 28990333 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057443.2 ENSRNOG00000059258 ENSRNOT00000078256 3 1 1 84 7 71502090 71503860 TGCAAATCATTCCTGAACACAG 60 71503905 71503923 TTTGTTCCTGTGTCCCTCC 60 Novel Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 1 2 2 80 7 75853235 75853943 CAGAAAGATTCTGACAGGAATGAG 60 75853980 75854000 ATACGGTTTCCACATTGACAG 59 Novel Rattus norvegicus 81 AABR07070069.1 ENSRNOG00000053546 ENSRNOT00000089282 3 1 1 81 8 47557187 47557205 CAATGGCAGCTTCTTTCCT 58 47557249 47560346 CAATGTGTCTTCAGAGGCTC 59 Novel Rattus norvegicus 81 AC129395.2 ENSRNOG00000057329 ENSRNOT00000085015 2 1 1 83 10 6889379 6889397 CTCAGAAGCCAGGAGAGTG 60 6889443 6889971 AGACAGGAGCACTGAAATCC 60 Novel Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 2 1 1 60 7 83991191 83991211 TGACCTGAAAGTTCTGAATGC 59 83989708 83991170 CTCCATGTCTGGAAACACCT 60 Novel DesignNoJunction Rattus norvegicus 81 AC107174.1 ENSRNOG00000059210 ENSRNOT00000086618 2 1 1 81 8 48401649 48401667 CACTGAGATGGGAGACCTG 59 48400793 48401605 CTCTGTGAAGCCTTGTTCTG 59 Novel Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 1 1 1 60 10 10921318 10943251 AAAGTTTGCAAAGACTCTGC 58 10921277 10921295 CACAGTGCTCTTGGTTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007566.1 ENSRNOG00000054888 ENSRNOT00000086723 3 1 1 81 2 19431937 19477038 CAAGGTAAGACAACCAGAAGAG 59 19477077 19477098 TCAACTTGAAGTTTGTGACCTG 59 Novel Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 2 1 1 62 10 15170445 15175419 GGACTCACATCATTCCCAG 58 15175444 15175463 AGTGTCTTCAGATGAGACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007584.3 ENSRNOG00000055958 ENSRNOT00000077298 1 1 1 80 2 20317493 20317513 GATGAGCGTTCCTACAATGTG 60 20317554 20321794 TATTGATGATTCCCAGCCCT 59 Novel Rattus norvegicus 81 AABR07070129.1 ENSRNOG00000051579 ENSRNOT00000081874 3 1 1 87 8 53826161 53826180 GATTTGGAACAGAGCAGCTC 59 53825895 53826112 CTTGCCAACCCAGTATAAGG 58 Novel Rattus norvegicus 81 AABR07058173.1 ENSRNOG00000056959 ENSRNOT00000087542 3 1 1 119 7 103557104 103557124 GAAGTTCAAGAAAGGATGCTG 58 103568785 103582819 CTTGATGCTTGAACCTTAGC 57 Novel Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 3 1 1 62 7 105102034 105102058 CTTCAGATGTTAGTCATCTTCTGAG 59 105102077 105122142 GGTTCTTAGCTCAGGATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 2 1 1 66 X 139471810 139473963 AAAGAGTTGGAGAGCAGGT 59 139473991 139474011 TCTTGGTGACTTACCTCTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058410.3 ENSRNOG00000058353 ENSRNOT00000087512 2 1 1 80 7 114928204 114930935 TTCCAGGAATAGGAAGGTAGG 58 114928144 114928165 GAGATCATTTCCATCTAGCTCC 58 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 3 1 2 61 X 149274230 149274251 AAGAAAGTGAAAGAAGTGCTGG 60 149274270 149279793 TAATTTACCGTTGGGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC095267.2 ENSRNOG00000055050 ENSRNOT00000077315 2 1 1 79 X 156235688 156235706 GGAGAAGCTACCAAGTGGT 59 156235958 156235976 TCAGGAAAGGCACCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070341.1 ENSRNOG00000053021 ENSRNOT00000078877 3 1 1 81 8 66356776 66356797 AGATTCTGAAGCAAGAGAAGAG 58 66356597 66356615 GGGCTTCCATAGGTCACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058639.1 ENSRNOG00000053745 ENSRNOT00000091728 1 1 1 80 7 129340956 129340976 AGTATACAGACTCTCAGCCCT 60 129339961 129340914 TTCAACAAGCCAAGCTGTG 59 Novel Rattus norvegicus 81 AABR07028092.1 ENSRNOG00000054941 ENSRNOT00000088096 1 1 1 86 17 56784470 56784488 CACAGTTTCCTGCTGAGAC 59 56782573 56784421 GTAAATGAGTCTCCAGTGCA 58 Novel Rattus norvegicus 81 AABR07007878.1 ENSRNOG00000059628 ENSRNOT00000088094 2 1 1 80 2 32553195 32553213 AATGTCATCAGGCAAAGCA 58 32530480 32553152 ACTGATTATCAGCTGGTCTG 57 Novel Rattus norvegicus 81 AC132760.1 ENSRNOG00000059372 ENSRNOT00000090074 1 1 1 89 20 7655029 7655047 ATAAGACCCACCACGAACC 59 7655096 7655789 TTCCGATGACTAGAATCAGTAGG 59 Novel Rattus norvegicus 81 AABR07044668.1 ENSRNOG00000055480 ENSRNOT00000086314 1 1 1 74 20 16531397 16531416 ACTCTTGATAGTCAGCTGGG 59 16636031 16636049 ACAATGGTAGCTGGTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103694645 ENSRNOG00000055663 ENSRNOT00000091347 1 1 1 87 4 33181880 33181898 ATCCAGTAAATGCTGCCTG 58 33181949 33197842 GACTTCGTTCTTTGTGGGT 58 Novel Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 3 1 1 60 8 89236979 89237000 ATTCTTAGCACAGTATCCTCTG 58 89235876 89236959 TCCACTGTCATTGTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008118.1 ENSRNOG00000059665 ENSRNOT00000083525 3 1 1 80 2 44266279 44272103 CAGTGACGAGCATCAACAC 59 44266217 44266239 CTTTCAATTTCTACCCTCTGCAG 60 Novel Rattus norvegicus 81 AABR07059876.1 ENSRNOG00000057613 ENSRNOT00000085398 1 1 1 86 4 39657226 39657247 GCTCTTGTTTGATTTGTAGACC 58 39654685 39654703 GCAGTGTTTGAATCACAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071199.1 ENSRNOG00000056201 ENSRNOT00000082349 3 1 1 82 8 104376263 104377777 CCACAGTGCCATTTGTGAG 60 104376199 104376219 CTGCTATTGGTCTGAGGAGAG 60 Novel Rattus norvegicus 81 AABR07071199.2 ENSRNOG00000060001 ENSRNOT00000078201 3 1 1 81 8 104389040 104390968 AGTTCCTCAGGAAGTTTATGCT 60 104388980 104388998 ATAAGCAGAGGCTCCAAGG 59 Novel Rattus norvegicus 81 AABR07071294.1 ENSRNOG00000057020 ENSRNOT00000080250 2 1 1 80 8 108080876 108084662 AAAGCATGCACAGAAATGC 58 108080814 108080833 GTCAGTAGCTACTTCCTTCC 57 Novel Rattus norvegicus 81 AABR07044988.3 ENSRNOG00000054791 ENSRNOT00000086519 2 1 1 80 20 30657384 30658343 GCCTCCTACAAAGTAACACAG 59 30658385 30658403 TGAGACTCATCTCCAGAGC 58 Novel Rattus norvegicus 81 AABR07071333.1 ENSRNOG00000059817 ENSRNOT00000077590 1 1 1 80 8 109877472 109877490 TCGTCACATCAACCATCAC 58 109876571 109877429 CTCGGTTATTGTGTCCTCTG 58 Novel Rattus norvegicus 81 AABR07008341.1 ENSRNOG00000054353 ENSRNOT00000091750 1 1 1 102 2 53510846 53510865 TGGAGAATGACAGCTTTGAC 58 53510238 53510256 CAAGATGCTCCCATTTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071383.1 ENSRNOG00000059497 ENSRNOT00000077319 1 1 1 82 8 112830895 112830914 AAGTTGATTACTGGCATGGG 58 112829969 112830851 GGGTTTCTGTTGCTCTTCTC 59 Novel Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 2 1 1 85 8 114178845 114178864 GTTAAACAACCACACCGGTC 60 114176736 114178797 AAAGCAACTTCACAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000082424 1 1 2 92 8 118464901 118464919 GTTCAGCTAACTGCTGTGG 59 118464971 118465232 TAAGTAGACCCTATGCAACTGTC 60 Novel Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000083444,ENSRNOT00000082424 1 2 2 118 8 118463907 118463925 GATGTCCTTTCCGACTGTG 58 118464869 118464887 AGAATTGGTGTGGCTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071549.1 ENSRNOG00000052055 ENSRNOT00000088777 1 1 1 88 8 121583530 121583548 TTCCACAGGACGAGAAGAG 59 121583600 121586497 AGATTCTCTGCACCTACGG 59 Novel Rattus norvegicus 81 AABR07060560.3 ENSRNOG00000056372 ENSRNOT00000085281 1 1 1 80 4 80674812 80674831 GTTCTCAGCATTTGCAAGGT 60 80674872 80676773 TTTGGTAAACAGAAGAGCCAC 59 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 3 1 2 117 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131375124 131375142 CTCTCATGGTGCAGGAGTC 60 Novel Rattus norvegicus 81 AABR07008878.1 ENSRNOG00000051488 ENSRNOT00000080367 2 1 1 81 2 77113592 77113612 ATAGTAGACTCAGAAGGCTGC 59 77113655 77161525 TCCAAGGTTGGTGGAACTC 60 Novel Rattus norvegicus 81 AABR07058699.1 ENSRNOG00000057791 ENSRNOT00000083170 1 1 1 80 7 133648776 133648794 CATTCACCGTTGTGTTGGA 59 133648837 133650868 TCTGGGAACTCTGATTTGGG 60 Novel Rattus norvegicus 81 AABR07044001.2 ENSRNOG00000055320 ENSRNOT00000087103 3 1 1 84 19 52058111 52058129 AAGACAGCTGGTTCTCACC 60 52058174 52059579 GATCTTTCTGACCCTTTGTCAG 59 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 2 1 2 69 7 134985985 134988458 AATGATCTCTTCCCGTTGTG 58 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 3 1 1 73 2 82771684 82772676 TTGTTGTGACACATGAGGC 59 82772712 82772731 TGAATTCTTACACTGGAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.4 ENSRNOG00000058206 ENSRNOT00000085794 2 1 1 80 7 137515435 137515453 GGGAGAAGACTGAATCAGC 58 137515495 137526262 GATCCTCTTCCATTACCTCAG 57 Novel Rattus norvegicus 81 AABR07071811.1 ENSRNOG00000055245 ENSRNOT00000087862 3 1 1 106 8 131603556 131603841 TCAACAAGCCATAGGAGTGG 60 131603469 131603488 TATCACAGCAGGATCTGCAG 60 Novel Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 2 1 1 70 7 137542337 137543393 CCACACTGTACTTCAACAAGAC 60 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 3 1 1 60 7 140008678 140010208 TCTCCAGTGTTTCTTCCAGG 59 140010231 140010249 CTGAGAAAGTCTTCTGCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 2 1 1 131 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659611 144677266 TATCTTCAAACTTTGTGCAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058955.2 ENSRNOG00000054057 ENSRNOT00000079399 1 1 1 80 7 145375692 145375710 ATCTCAGAGCCAGTCTGTC 59 145375752 145376715 CCTATGTAGCTTCTCAGGAGG 59 Novel Rattus norvegicus 81 AABR07009600.2 ENSRNOG00000056581 ENSRNOT00000091685 1 1 1 80 2 105589413 105589432 CTGATGAGAGCTCTTTACCC 58 105589473 105633743 ATTACTGTACATGGAAAGGCC 58 Novel Rattus norvegicus 81 AABR07010033.1 ENSRNOG00000053304 ENSRNOT00000077121 2 1 1 60 2 121570261 121570280 GTGATAGAATGGCAGCTGTG 59 121570220 121570239 CAAGCGACATGAAGTACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010160.2 ENSRNOG00000058063 ENSRNOT00000088347 3 1 1 82 2 127352904 127354852 AATATGCTGCCAGCAACTG 59 127352840 127352860 TTTGTATCACCTAGGGTCCTC 59 Novel Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 1 1 1 91 2 150686688 150686706 GACATCTGAAGGCAAAGGG 59 150686758 150689251 TCTTTCAGATTAGACCATGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010777.1 ENSRNOG00000052971 ENSRNOT00000087518 2 1 1 80 2 151312872 151314330 GTTTGCAGATTACTAGCTGGG 59 151312812 151312833 TACTCTTGAAATGCTTAGTGGG 58 Novel Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 3 1 1 61 2 154904932 154906800 AAAGGTGGAGTTCTGTATGAG 58 154906820 154906841 CACATCTTCCTCAATCATTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 1 2 2 66 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399605 156399623 AGTTGTTCCTGGCCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011997.1 ENSRNOG00000052251 ENSRNOT00000089493 1 1 1 102 2 180921251 180921269 CAATATGTGGGAGCCTGGA 59 180929535 180929553 CCAATGCTTAGCTGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014328.1 ENSRNOG00000057790 ENSRNOT00000081606 3 1 1 91 14 9785620 9785638 CCTCCTTGACTCTAGCACG 60 9783117 9785565 TTCTCTTCCAGGCTGTCAC 59 Novel Rattus norvegicus 81 AABR07014342.1 ENSRNOG00000061516 ENSRNOT00000086333 3 1 1 60 14 10297105 10297124 AACCTCAGAGCATTTCAGAC 58 10296710 10296728 CCTGCAGCCTGATTATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014424.1 ENSRNOG00000051389 ENSRNOT00000080921 2 1 1 81 14 15418316 15418336 TTCAATTGTCTCCAGCATCTC 58 15418379 15419169 TCATCAGGCTCCTGAAGAC 59 Novel Rattus norvegicus 81 AC136013.4 ENSRNOG00000061793 ENSRNOT00000091589 1 1 1 76 14 17659901 17659919 TAGAGAAGGGCCACAATCC 59 17661225 17661243 GTGGACCCAGATCGATCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014512.2 ENSRNOG00000058092 ENSRNOT00000091701 1 1 1 60 14 18855563 18855584 CTCTTTAAGATGGCTCTTTGGA 58 18855605 18855815 CATCTGCACTTTGCTCTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 3 1 1 93 2 222721588 222783265 AAAGGTTGTCACCCTCACC 60 222783320 222783340 TCCATGAAGTTTAAAGCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013165.1 ENSRNOG00000060844 ENSRNOT00000089739 2 1 1 86 2 225801427 225803005 CCCAAGATCTCTGTGGGTG 60 225801359 225801377 TGCTGCAAAGCTAACATGG 59 Novel Rattus norvegicus 81 AABR07013167.1 ENSRNOG00000060865 ENSRNOT00000083669 1 1 1 97 2 225932276 225937085 CTGAGATGCTACAAGGTGC 58 225932197 225932215 GCTTGACCAGAATCCTCCT 59 Novel Rattus norvegicus 81 AABR07013365.1 ENSRNOG00000058246 ENSRNOT00000085046 2 1 1 113 2 234491505 234493139 TGTATGACTGCAGGTTTGAC 58 234491411 234491430 TTTATCCATGCCTGGAAGTC 58 Novel Rattus norvegicus 81 AABR07013439.1 ENSRNOG00000061584 ENSRNOT00000077548 3 1 1 60 2 237482529 237482547 TCACTTCAGCTTCCTAGCA 58 237482568 237482589 GGTTATGTGTCTTCTAGCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013907.1 ENSRNOG00000056191 ENSRNOT00000087260 1 1 1 84 2 262385535 262385555 CCATCATAGAAACCATGTGGG 59 262385601 262386834 TGGATGTGGTCTGTTTCCT 59 Novel Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 3 1 1 68 13 51939277 51939295 CAAGTCTCAACTTGCCCAC 59 51939328 51939346 AGAATTACCACCAGGTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010672.1 ENSRNOG00000054545 ENSRNOT00000080780 2 1 1 83 2 147010504 147010522 GGAGGAGACAACAGGACTG 59 147010568 147013991 TTCCTTGGTACAGAAGGTGG 59 Novel Rattus norvegicus 81 AABR07053152.1 ENSRNOG00000041826 ENSRNOT00000063579 2 1 1 61 3 94352225 94352246 GGAGTGTTTGCTGTATAATTGG 58 94352185 94352203 TCAAGTCATGCCTACTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055345 ENSRNOT00000086162 1 1 1 60 2 229931501 229931520 TGAGTTCAGAGGAGGAAGAG 58 229931460 229931479 TCTACTGGAAACCACAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055345 ENSRNOT00000086162 2 1 1 60 2 229931501 229931521 GTGAGTTCAGAGGAGGAAGAG 60 229931461 229931481 CTACTGGAAACCACAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099294.1 ENSRNOG00000029315 ENSRNOT00000050814 2 1 1 60 1 224929923 224929941 CCTAGAGCAGCCTTTCCAG 60 224929964 224929983 ATAGATCCTCTTCCGCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061758 ENSRNOT00000089169 1 1 1 60 17 34435028 34435046 CTAGAGGCATTGCAGACGT 60 34434986 34435005 CTCTGCTGTACCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053298 ENSRNOT00000088944 3 1 1 60 4 135196843 135196862 GGCTAGTCTGGTATCTTCCT 58 135196883 135196903 GTGTAGCTTCTAGAGGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056355 ENSRNOT00000077921 1 1 1 72 4 70504090 70504108 TGTTCACTTAACTGGTGGG 57 70504141 70504162 CAATGGTTACATCAAGAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027753.4 ENSRNOG00000058263 ENSRNOT00000079139 3 1 1 60 17 43817532 43817551 TACCGGAATCTCTTCCAAGG 59 43817574 43817592 CTCGAAGATGTCGTTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030543.1 ENSRNOG00000051634 ENSRNOT00000090759 1 1 1 60 10 92771623 92771642 AAAGAAGTATGAAGCCCTGG 58 92771664 92771683 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 1 1 1 60 14 99672222 99672240 ACAACATCTGCTGTCACCT 59 99672266 99672284 GAGATTCCACCTCACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000041963 2 1 3 146 X 65413513 65423965 TCTGATCATTTCAGTGAGAGTC 58 65412715 65412733 GTCACATATTGGTGTCCCA 57 Novel Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 1 1 1 60 4 101645786 101645806 GTTCCTGTTTCTGCTAATGCT 59 101646208 101646227 CTGGGTCATCACAACATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005040.1 ENSRNOG00000054914 ENSRNOT00000078844 2 1 1 60 1 177529413 177529434 AAGTCAAAGATCAAGGTGTTGG 59 177529455 177529473 CAAGCCAAAGACAGAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054447 ENSRNOT00000084930 1 1 1 60 1 76281402 76281420 GAGAAGATTAGCATGGCCC 58 76281444 76281462 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067 3 1 3 109 13 75158234 75158775 GCAAAGATGCTATACAGATGAC 57 75158844 75158863 CTTAGGAACAGAAGCCTCAC 58 Novel Rattus norvegicus 81 ENSRNOG00000046602 ENSRNOT00000075002 2 1 1 80 1 214692101 214692584 TAAGACATGCATCCATAACCCT 59 214692623 214692643 CAGCCATTGTAGGAAATCTCC 59 Novel Rattus norvegicus 81 AABR07042609.1 ENSRNOG00000051666 ENSRNOT00000078232 2 1 1 82 19 275683 276861 ATCCATGAAGAACAGGCCC 60 276907 276925 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 AABR07013918.1 ENSRNOG00000051010 ENSRNOT00000073367 1 1 1 60 2 262917886 262917904 TTTGTAGACCTGGCTAGCC 59 262917928 262917946 AGGACTCAGGAGTCAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018272.1 ENSRNOG00000060272 ENSRNOT00000090328 2 1 1 61 15 49773122 49773140 AGTTGAAGATGCAGAGCCT 59 49773079 49773097 TCACTACACGACGGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052823 ENSRNOT00000091548 2 1 1 61 10 89277137 89277155 GCTTATCCATTGCACTCCG 59 89277180 89277198 TTGAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000083943 3 1 2 96 16 31273646 31274409 ACACTCATCAGACCATACCA 58 31273432 31273451 TCCTAAGGGTCTAACAGAGC 58 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000091377 3 1 2 80 1 254560179 254560199 TCTCCATGAGTATCTTCAGCA 58 254569907 254570001 GTTCAATGAGAGCTCCACAG 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 2 3 4 94 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336266 88341873 CATATTTCTTGCTGCTCCCA 58 Novel Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 1 1 1 63 15 31951125 31951143 CTCTGGCTTCAACTGAGTG 58 31951362 31951380 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 3 3 4 137 9 81644543 81644561 CTCCAAAGCCAAGGATCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057277 ENSRNOT00000085623 2 1 1 60 15 57318122 57318142 ACACAGAGAAGATTAGCATGG 58 57318082 57318100 GGAACGCTTCACGAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0746.4 ENSRNOG00000051339 ENSRNOT00000076603 2 1 1 60 X 73774768 73774786 GTACACTGTAGCTGTCCTC 57 73774726 73774746 AACCATCTGTAATGGGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054237 ENSRNOT00000085859 2 1 1 63 13 44585896 44585914 TTGAGTTCAGTTCAGGGCA 59 44585941 44585959 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047044.1 ENSRNOG00000036484 ENSRNOT00000054592 1 1 1 60 5 17059742 17059762 CAGGTAAGAATCAACCTGGTG 59 17059702 17059720 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047044.1 ENSRNOG00000036484 ENSRNOT00000054592 3 1 1 60 5 17059743 17059762 CAGGTAAGAATCAACCTGGT 57 17059702 17059720 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000057562 ENSRNOT00000088093 1 1 1 60 13 89884241 89884262 CAGATCGTATAAATCTTTCGCC 58 89884202 89884221 ACTCAGAATTGTTCCTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061207 ENSRNOT00000078711 3 1 1 60 X 102150559 102150578 TTAAAGCTCAGTGGAAGAGG 57 102150599 102150619 TTTGACCAAAGACTGGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 1 1 1 60 4 90089738 90089760 CATTACAGAGTCATGAGCATGAC 60 90090490 90090508 TGTGTAGTTGGCAATTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 3 2 2 60 6 143194560 143194579 AAGCATTCCTCAAGATCACC 58 143194519 143194537 CGAGCACAGTAGTATGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 1 1 1 74 4 157026430 157026448 AGAAGAGGAGGTTGCACAG 59 157008610 157008628 CACTGAGCCATTTCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC126148.2 ENSRNOG00000057502 ENSRNOT00000087165 3 1 1 87 1 222525815 222525833 TTGAGTCTTGGGTTCCAGG 59 222525741 222525759 AAAGGAGAAGCCCTTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 2 3 4 103 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672 3 1 2 102 16 33375798 33375825 CAGGAACAGTTAAACAACCC 57 33375890 33375908 ATTCTGCACTAAACCCGTC 58 Novel Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 1 1 1 75 X 157458861 157458880 ACATTCTTCTTGCAAGGGAG 58 157458804 157458827 GTAAAGGGATGGATCTCTATAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 1 1 1 60 14 32773477 32773496 TGATACTCAACTGCCTGAGC 60 32770338 32770360 CAGGTGCTTTCCAGTATTATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000086689 2 1 2 118 1 11984270 11984290 GTTTCACCAAAGACACTTCTG 58 11983184 11984191 CTTTCATGCACTTCATCCAC 58 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 1 2 2 80 14 61651300 61660207 CCATTCTTAAGTATATGACTGACGG 59 61660243 61660263 TTATCACACCATAACGCTCCA 60 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000087589 2 1 2 80 14 61664892 61668122 GGAAGAAAGGTGGTTGTGTC 59 61668163 61668183 TCCAGGGTCAATAACAAACAC 59 Novel Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 3 1 1 60 5 36435072 36435092 CAGCTTCTACTGATCTTCAGC 59 36434017 36434037 TTTGACTAAGACGTACTCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 3 2 3 88 1 19639163 19639281 ACATTGATGTATCTGCAACTGC 60 19639096 19639116 CTCGTTGATGTTCTGGATGTC 59 Novel Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 2 1 1 60 5 85124140 85124158 CCGAATCGTGATTCTAGCT 57 85137788 85137809 AGGATAGTTGTTTGCATAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 2 1 1 60 4 146296368 146296388 TAGTCACAACCATGAGAAGAC 58 146294969 146294987 CACTTACTGTTGATGGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 3 3 3 83 20 56198701 56199211 CTGGTTATGCAAATCAGAACCT 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000082851 3 1 2 84 5 132700492 132700513 CCTTTAGGCATAAATGTTGTGG 58 132700557 132706052 ACACATCATTTATGCCTGGA 57 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 3 1 1 65 5 132777765 132777785 AACATCAAGCTCATGTCACTG 59 132791301 132791319 ACATGCTTCACCTCTAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 2 1 1 77 6 26142047 26142065 ACCTGACTCTGCTTCTCAC 59 26145358 26145376 CTTCTCAGGCCTCTGAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 3 1 1 60 18 49224670 49224688 TCTTAGCCTTATGAGCCCA 58 49223937 49223957 CAAGGTGTGAGTATTGTTGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957 2 1 2 80 15 46502334 46512111 AGTATTTAGAGGGATGATGCTG 58 46512151 46512170 TTTCTTCAGACCTGAAGCAC 58 Novel Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 3 1 1 60 6 36846741 36846759 CAAACAGCACTGTTGACAG 58 36855894 36855913 CATTAAATGTCGCAGGACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 1 1 1 60 15 50309984 50310003 CAGCCTTCTATCACATTGGA 57 50301616 50301637 TCTCATAGGTGCAACATAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 1 1 1 60 6 45023527 45023545 GAGACACATGGATCTGCAG 58 45024516 45024534 AATGTCGGCCTGGATAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 2 1 1 60 18 67748221 67748242 CCTGTCATTTGTCAAATATGCC 58 67695167 67695185 CCTCTGGACTCAAGATGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 2 1 1 66 6 67771835 67771853 AGAATTGGACCTCTGTGCT 59 67775161 67775179 AAATTTCCATCCTGCTCCA 57 Novel DesignNoJunction Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 2 1 1 66 18 79312135 79312153 GTGGATGGATGGGTGTCTC 60 79311562 79311585 GTCAAATCCTATTCTTGTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 3 1 1 63 11 27599619 27599640 CTTGAGTCAGAAATTGAGAAGC 58 27607298 27607316 TGTGATCTCGCTCCTTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000086587 1 1 2 91 6 119129185 119134201 CTGTGATTAATCTGAGGAATCGC 60 119134247 119134270 GAGATTTCATTCTTCCTTGAGGTG 60 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112 2 1 3 87 6 125304523 125306513 GATGGACAAACAACAGACGG 60 125304455 125304473 TTAGCCACCACTCATAGCC 59 Novel Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 1 1 1 60 3 61124849 61124868 CTGTTCCTTTACCCTCTCAG 57 61124891 61124909 GTCCGTTCTTCCAATTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021762.2 ENSRNOG00000061853 ENSRNOT00000077896 1 1 1 60 13 90238723 90238741 AGCAACAGCAAGGTAACTG 58 90221456 90221474 ATTGGGAGCTCATTCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 3 1 1 62 1 147435594 147435612 AGGAACTACCTCATCCCGA 59 147424534 147424552 GTCATGCAGCACTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 2 1 1 60 16 24630680 24630698 AAGGACAATGCTTTGCTCC 59 24632213 24632231 GAACTCCAAGTCTGAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 2 1 1 84 12 36812690 36812708 TTACTGGGCTGATGGATGG 59 36813654 36813673 GGGTACAGGATAGAACGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 2 1 1 60 16 64924503 64924523 GTATTCACTGACTGTCAGCAG 59 64923427 64923448 CAGGATTAGTAAATACCCTGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000082059 3 1 3 94 8 5169116 5171866 CAGAGTCATTTGCAGGCTG 59 5169040 5169058 AGCAGGATACTCTGCTCTC 58 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 1 2 2 90 17 21293251 21294174 AGAACAATACACCACTTGGG 58 21293180 21293200 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 1 1 1 60 8 12822964 12822982 TCAGCCAATGAGTAGCGTC 60 12794641 12794660 CTCTCCATCTGCTCTGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 2 1 1 61 1 272859338 272859359 CTGTGGAAAGAATGATAGATGC 57 272858844 272858863 TTTCGTTCCATGATTCAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 3 1 1 76 7 69338567 69338585 GGTTCAGAAAGTGCAGGTG 59 69339893 69339913 CTTGCAAACAACTCTTCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 1 1 1 94 8 53832027 53832045 CACAGCCTCTCAACTTCAG 58 53837429 53837447 CATATGTTTGTCTCGGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000090459 2 1 2 94 10 35053548 35053566 ACAGAACCATACCTCAGCC 59 35053223 35053490 CATCAGTACTGAGCCTGCA 60 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 2 1 2 92 X 149274238 149274256 GAAAGAAGTGCTGGCTCAG 59 149279814 149279832 TACTGCTGGAAAGAGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 3 1 1 60 7 126382975 126382993 AACTGGAGTCACTCCAGAG 58 126383598 126383617 TGATGGATGATAGATGCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 3 1 1 61 2 32636213 32636233 GCTGGAAGCAGAATTATCTGG 59 32632999 32633019 TTGAAACATAGCCGTAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383 2 1 2 80 4 5724001 5734565 CATTATTCCGTCATGTATTGCC 58 5723942 5723960 TCAACTCCTCTCAACACCC 59 Novel Rattus norvegicus 81 AABR07028874.1 ENSRNOG00000051469 ENSRNOT00000080368 1 1 1 116 17 89511693 89511714 CAACATAGAAGTCAAGCAATGG 58 89510852 89510875 CTCCATCGACATGATATAATCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 3 1 1 61 2 63732541 63732559 GGCATGAAACCCTGATGAG 59 63734650 63734670 GTTGTCAGTAAAGGATTGCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010894.1 ENSRNOG00000051752 ENSRNOT00000083543 2 1 1 60 2 154909939 154909959 TATGGGAAATGCTGTTGTCAC 59 154911327 154911348 AAAGAAGTACCACCAAATGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 2 1 1 61 2 162021722 162021740 CCTTGTAGCCCAGAAAGCT 60 162022789 162022807 GGGTTTGAAGAGCTCACCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 1 1 1 69 2 177343674 177343692 TTCTGCCTTGGGATTCCTG 60 177343190 177343208 CAAGGTTCCTTCTTCGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 2 1 1 70 2 177343675 177343693 TTTCTGCCTTGGGATTCCT 59 177343190 177343208 CAAGGTTCCTTCTTCGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 1 1 1 63 2 222721567 222721586 GGGTAACATGTGGCTATTGG 59 222783271 222783289 GATCAGTATGTGGCCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 1 1 1 75 2 255466053 255466071 AAGGTCTACAGCTCTTGCT 58 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-cox3 ENSRNOG00000030700 ENSRNOT00000049683 1 1 1 60 MT 8664 8685 ATCAGCTCTTCTACTTACATCC 57 8703 8724 GAGAATTGTGGAGTTGTAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd4l ENSRNOG00000031053 ENSRNOT00000044582 1 1 1 60 MT 10034 10055 CTCCATAACCATCCCAATTACC 59 10076 10094 TAAACCTACTGCTGCTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa4l ENSRNOG00000010819 ENSRNOT00000015474 2 1 1 80 2 127653757 127654312 GGATCAAGCTAACTTACAACGT 59 127654353 127654371 TCCTTGACTGCAGGAATCC 59 NA Rattus norvegicus 81 Kprp ENSRNOG00000028865 ENSRNOT00000042142 1 1 1 60 2 193133147 193133166 GAGATCCCATTCATTGTCCC 58 193133106 193133124 TCTTGGCTGTAAGGAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir137 ENSRNOG00000035491 ENSRNOT00000053614 2 1 1 60 2 221658140 221658160 GGGTGGATAATACGGATTACG 58 221658182 221658200 GGTACTCTCCTCGACTACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 1 3 3 80 3 3828464 3829618 CGCATCTATAAAGCAGCTGG 59 3828403 3828426 GTAATTCTGTCGATAGACTTGAGG 59 NA Rattus norvegicus 81 Prrc2a ENSRNOG00000000852 ENSRNOT00000001133 3 1 1 80 20 5141634 5141652 GACTCCCAGTTACATCCCA 58 5141458 5141590 ATACAGAGGCTGTGACCTG 59 NA Rattus norvegicus 81 Olr1138 ENSRNOG00000050182 ENSRNOT00000072410 2 1 1 60 8 19168116 19168137 TATTGGACTGACATATGCTCCT 59 19168077 19168096 TATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1138 ENSRNOG00000050182 ENSRNOT00000072410 3 1 1 60 8 19168116 19168136 ATTGGACTGACATATGCTCCT 59 19168076 19168096 ATATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174,ENSRNOT00000084455 3 3 3 87 2 187848283 187848492 TTTACAGTGAGGAACTGCGT 60 187848215 187848233 CTCTCAAACTCTCGCTGCT 60 NA Rattus norvegicus 81 Hcn4 ENSRNOG00000009450 ENSRNOT00000012644 3 1 1 80 8 63620959 63630065 CAGTGGGAAGAGATCTTCCA 59 63630108 63630126 AAGCATCATGCCAATGAGG 59 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204,ENSRNOT00000063943 1 2 2 80 15 40542411 40542430 TTTGGAACAGGACTCTTTGG 58 40540161 40542369 TGTAGTAGCTGTTGTTCCTG 57 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049877 ENSRNOT00000071644 2 1 1 60 8 41235243 41235264 CTCTTCTTGGGAATCTATGTGG 58 41235284 41235303 CAATCAGAACAATCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faim ENSRNOG00000030069 ENSRNOT00000047613 2 1 1 80 8 106816379 106817358 TTGAAGATGATGAAAGCCCTC 58 106817399 106817418 CGTCACTTAATGCTACGTCC 59 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 1 2 2 80 X 156326538 156327608 TTGAGCAGCATATGAAGAACAG 59 156327647 156327667 GAATACAGCCTTCCATCTCCA 60 NA Rattus norvegicus 81 Olr1539 ENSRNOG00000047514 ENSRNOT00000040089 1 1 1 60 11 43310403 43310422 CGTCTCCTACTTCTCTGTCC 59 43310445 43310463 GCTTCTGCCTTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk4 ENSRNOG00000001618 ENSRNOT00000002206 2 1 1 94 11 38265721 38265739 ACTTCCTGCATTGCATGTC 59 38262145 38265668 GTCAGAAATCTTGACATGGTAGTG 60 NA Rattus norvegicus 81 Bhlhb9 ENSRNOG00000003191 ENSRNOT00000049375 1 1 1 60 X 106391306 106391324 CCAGCCACAAGTCTAGGTC 60 106391343 106391366 CAGTTCCCTATAACATTCTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps20 ENSRNOG00000008555 ENSRNOT00000011314 1 1 1 80 5 16706257 16706550 TGCCTACCAAGACACTGAG 59 16706195 16706214 TCATCTGGAAACGATCCCAC 60 NA Rattus norvegicus 81 Glrx ENSRNOG00000012183 ENSRNOT00000016372 1 1 1 81 2 2606259 2613226 GAGCAAGAACAGTTCCTCG 59 2613270 2613289 CCATTCTGTTGCATGGAGAG 59 NA Rattus norvegicus 81 Igsf1 ENSRNOG00000007600 ENSRNOT00000010325 2 1 1 80 X 136800768 136801301 GAGCTGATTGTTGTAGCTTGG 60 136800708 136800726 TGGATGAGATACTCGGCAC 59 NA Rattus norvegicus 81 AABR07006258.1 ENSRNOG00000028444 ENSRNOT00000039369 2 1 1 60 1 226252516 226252535 CAACTCTTCTTCGTTTGGCT 59 226252558 226252576 GGAAGTACTGGACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cops5 ENSRNOG00000006499 ENSRNOT00000008877 3 1 1 80 5 8888080 8888101 TAAACTACTTGAGCTCTTGTGG 58 8888139 8892008 GTATAGTCAGCATTGGTAAGCA 58 NA Rattus norvegicus 81 Mycs ENSRNOG00000003085 ENSRNOT00000004118 3 1 1 60 X 17824735 17824755 GTACATCCACACTTTGCAGAC 60 17824775 17824795 ATACAGTTTCTCCCTTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irs2 ENSRNOG00000023509 ENSRNOT00000032918 3 1 1 187 16 83828316 83828334 GGAGACAAGAACTCCTGGG 59 83828483 83846257 GCACTTTACTCTTTCACCACG 60 NA InUTR Rattus norvegicus 81 Zcchc13 ENSRNOG00000002923 ENSRNOT00000003899 2 1 1 60 X 74497598 74497618 TACACTTGTGGTGAATTTGGG 59 74497638 74497658 ATCTGTAGCACTTGATTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crabp2 ENSRNOG00000022101 ENSRNOT00000025183 3 1 1 85 2 187326041 187326059 AACAGAGGCTTCTGAAGGG 59 187326107 187326470 TGTCATGGTCAGGATTAGCT 59 NA Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528,ENSRNOT00000089196 3 2 2 89 1 21853792 21853810 GAAATGCTGTGAGGAGTGG 59 21853591 21853609 AATGTGTCTTCCAGTCGGT 59 NA DesignNoJunction Rattus norvegicus 81 Npy4r ENSRNOG00000061026 ENSRNOT00000083105 2 1 1 60 16 10490100 10490119 CCAATAGCATCCTGAACGAC 59 10490059 10490077 TCCAGAAACTCCACAACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917,ENSRNOT00000080185,ENSRNOT00000065065 3 3 3 81 2 188409797 188411917 CGGATCAAAGAGGTCCTGG 60 188409734 188409753 GTTCCTGGAAGGTCTGTACC 60 NA Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000077246 1 1 2 97 1 201968897 201981136 CAGTTGTCAGGAGATATAACAGAC 59 201968823 201968841 TTGACGAAGTCCAAAGGCT 60 NA InUTR Rattus norvegicus 81 AABR07006267.1 ENSRNOG00000050024 ENSRNOT00000072135 2 1 1 80 1 227600547 227602340 AAGGTTTGGTTCGAAGCAG 59 227602381 227602402 TCAGTGAGTTGATTATCATCCC 58 NA Rattus norvegicus 81 mageb1l1 ENSRNOG00000048202 ENSRNOT00000074089 2 1 1 60 X 54865377 54865395 TATCCTCAAGAAAGCCGCC 60 54865335 54865355 GACTTCTTTCACCTCAAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rorc ENSRNOG00000020836 ENSRNOT00000067042 2 1 1 80 2 195627281 195628423 CAGAGATGCTGTCAAGTTCG 59 195628466 195628484 TGTTGCAGTTGTTTCTGCA 59 NA Rattus norvegicus 81 LOC100912317 ENSRNOG00000045793 ENSRNOT00000074963 3 1 1 60 8 42266138 42266158 ACATTCTTGGTTTCCATGCTG 60 42266179 42266198 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hccs ENSRNOG00000025910 ENSRNOT00000037862 1 1 1 80 X 26298660 26301276 GCTCTTCATGCTCATGAGTG 59 26301318 26301337 TGCCCTTGGTGAATACTCTC 60 NA Rattus norvegicus 81 LOC100909913 ENSRNOG00000002960 ENSRNOT00000003984 1 1 1 80 X 6806714 6814395 ATGTAGCTCAAAGATGGTGCT 60 6814437 6814455 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Rn60_X_0594.3 ENSRNOG00000051140 ENSRNOT00000076295 2 1 1 60 X 58544740 58544760 GAGGATGCTGGCTATTAAGAG 58 58544780 58544800 CTTTCTCTTCTTGTCACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr0b1 ENSRNOG00000003765 ENSRNOT00000005023 3 1 1 85 X 54735556 54737923 TTTAACCCAGACCTGCCTG 60 54737971 54737990 ATGTGCTCAGTGAGGATCTG 60 NA Rattus norvegicus 81 AABR07027450.1 ENSRNOG00000045599 ENSRNOT00000058388 3 1 1 81 17 31779675 31780084 TGGATTCCTGCTTCCAGAG 59 31779612 31779631 TAGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 Flad1 ENSRNOG00000020642 ENSRNOT00000028030 2 1 1 80 2 188728443 188728462 ACCTACAGAAACATCTGGGA 58 188728295 188728400 CAGTGATGTGTACCCTCTG 57 NA Rattus norvegicus 81 Olr358 ENSRNOG00000059089 ENSRNOT00000091024 1 1 1 60 1 230079783 230079801 GAAATGTGGGCATGATCCT 58 230079741 230079759 AAGTACATGGGAGTGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 2 1 1 61 X 54821402 54822102 GAGGTTAACTCTATACCAGTAATCC 58 54822120 54822139 GTTGAAGGCATCATACACCA 58 NA DesignNoJunction Rattus norvegicus 81 Selenbp1 ENSRNOG00000047158 ENSRNOT00000071603 2 1 1 80 2 195418400 195418418 GTGGAGAAGGTGATCCAGG 60 195418240 195418357 GATGTCGGTGATCAAACCAG 59 NA Rattus norvegicus 81 Dnajc18 ENSRNOG00000019995 ENSRNOT00000027194 3 1 1 80 18 28490134 28490153 CATACAAGAAACTCGCCCTG 59 28477782 28490092 TTCCTATCGCTTTGAAGGCA 60 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 1 2 2 80 X 13277348 13278845 TGAAACTGTATGCCATGTTCC 59 13277288 13277308 CATGACGAAACACAAATCCAG 58 NA Rattus norvegicus 81 Zbtb22 ENSRNOG00000000476 ENSRNOT00000000558 2 1 1 60 20 5477245 5477265 ACGTGAATATGCATCTCAACC 59 5477205 5477224 TTGAACTTCTTGTTGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1qtnf9 ENSRNOG00000013793 ENSRNOT00000018533 3 1 1 88 15 41070327 41074314 CCAGGGTTAAGTCCAGACC 59 41074366 41074384 GTCCTGGGAGAATACGCTC 60 NA Rattus norvegicus 81 Olr326 ENSRNOG00000021072 ENSRNOT00000028606 2 1 1 60 1 228558521 228558539 GGATTCTCAGACCACCCAG 60 228558479 228558498 GATAGATGCCCAGGAAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r12 ENSRNOG00000055538 ENSRNOT00000078350 1 1 1 60 1 60406997 60407018 GTGTTTCTGTTGCTACTGTCTG 60 60406958 60406976 CTGGGACTGATGGTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx15 ENSRNOG00000021007 ENSRNOT00000028511 1 1 1 80 1 221496060 221496078 ACTACACAGTTTCGGACCC 59 221491467 221496019 CCTTCTTTGAGATGAACTGAGC 59 NA Rattus norvegicus 81 Ddx41 ENSRNOG00000012771 ENSRNOT00000018114 2 1 1 80 17 9635931 9635949 TATGTGAAGGAGGAAGCCA 58 9635991 9636121 CTCTGCAAAGATGAGTACAGG 59 NA Rattus norvegicus 81 Rn60_7_0942.1 ENSRNOG00000026659 ENSRNOT00000031629 1 1 1 60 7 93517534 93517553 GTTGTTCCAGCTAATCGGAC 59 93517574 93517594 CACCAATGTAACCTTGACACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nos3 ENSRNOG00000009348 ENSRNOT00000013058 1 1 1 80 4 7323139 7323780 GACATTGAGATCAAAGGACTGC 60 7323080 7323099 GTAGAGATGGTCCAGTTGGG 60 NA Rattus norvegicus 81 Rpl10a ENSRNOG00000000505 ENSRNOT00000000603 1 1 1 80 20 7910473 7910674 CAGATGAAGAAGGTGCTGTG 59 7910715 7910735 GTGGATGTTGTAGACTAGCTC 58 NA Rattus norvegicus 81 Jrk ENSRNOG00000027238 ENSRNOT00000000199 1 1 1 80 7 115945094 115946409 TACAGGGTCCACAGTTCCT 60 115945032 115945052 TCTGAGCTGGGAATACTTCTC 59 NA InUTR Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000028158 1 1 5 86 1 87704865 87704883 ATGTGTTCCCTGTGTTGGA 59 87704933 87707451 CGGAATCTGTATCCGGGAG 60 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000028158 3 1 5 95 1 87704931 87707450 TTCTCCCGGATACAGATTCC 59 87707508 87707526 TTCTCATTACCTCCCAGCG 59 NA Rattus norvegicus 81 Tiprl ENSRNOG00000003048 ENSRNOT00000004083 2 1 1 94 13 83496007 83496674 GAAAGTAGGACGGAGGGTG 60 83495931 83495950 GATTCTCCAAGCAACGTTCC 60 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 1 2 2 82 9 63564835 63564853 AATGCCTTAAAGGAGCTGC 59 63558403 63564793 GATGAAATCATACTCTGGGAGAG 58 NA Rattus norvegicus 81 Ephx4 ENSRNOG00000023389 ENSRNOT00000037101 3 1 1 85 14 3363950 3370675 GATTTCAAGGCTTTGAAACACC 59 3363886 3363907 TCTAGATCTTCTGTTGTCAGCT 59 NA Rattus norvegicus 81 Insig2 ENSRNOG00000002478 ENSRNOT00000003391 3 1 1 81 13 37279647 37279665 ACCAGATGTGATCACCAGC 60 37271797 37279603 TAGTCCAATCACAGCTGAGG 59 NA Rattus norvegicus 81 AABR07053188.1 ENSRNOG00000031694 ENSRNOT00000041291 3 1 1 60 3 95939350 95939368 GAAGGTGTTTATGCCCGAG 59 95939392 95939410 ACACATAAGCACACCTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065802.1 ENSRNOG00000047599 ENSRNOT00000075526 3 1 1 60 6 141831611 141831631 AGGTGAAACTGGAGGAATCTG 60 141831571 141831590 GAGAGTTTCACGGACATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim5 ENSRNOG00000018160 ENSRNOT00000068267 2 1 1 80 5 135841017 135841036 TGCCTGTTTCTCACTTTGAC 59 135841076 135844561 TCTGCTTTCATTCACATCTGAC 59 NA Rattus norvegicus 81 Tmem177 ENSRNOG00000025484 ENSRNOT00000039074 3 1 1 80 13 35931220 35933221 CTACAGAGTTGCTACACATCTG 59 35931161 35931179 ATGGCTTCCATCCAGTCAG 60 NA InUTR Rattus norvegicus 81 AABR07036187.1 ENSRNOG00000045833 ENSRNOT00000073223 2 1 1 60 12 35613020 35613038 TCGTTCTAGATCAACTGCC 57 35613060 35613080 TCACTTCCATCATACTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glce ENSRNOG00000025372 ENSRNOT00000038641 1 1 1 80 8 67010374 67020007 CAGTTTATTGCTCCAGAAGCC 60 67010314 67010337 GAGGTCGAATGAGATAATGAAGTC 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 2 2 2 80 17 38460405 38460425 CTGGTGTGCTCCAATTATTCC 59 38460465 38461123 TTTCAAGAGGACCTCAGACTG 60 NA Rattus norvegicus 81 LOC306766 ENSRNOG00000017133 ENSRNOT00000023125 2 1 1 80 17 10590308 10591299 CTTGACAAGACAGAGGAAGG 58 10591342 10591360 CTTGTCTGAGCTGTCAGTG 58 NA Rattus norvegicus 81 Commd2 ENSRNOG00000043386 ENSRNOT00000022778 3 1 1 81 2 147778087 147778105 AGTAGCGACACTATCCAGC 59 147777535 147778044 CCAGTTCAGAAATCATGAGCT 58 NA Rattus norvegicus 81 LOC100910060 ENSRNOG00000028810 ENSRNOT00000044840 3 1 1 80 15 35186621 35186639 ATAGAAGTGTCTGCGGAGG 59 35185587 35186580 CTTTCATTGATCTTCCAGTGCA 59 NA Rattus norvegicus 81 Tap2 ENSRNOG00000046031 ENSRNOT00000074261 1 1 1 82 20 5208904 5210762 ATTCTCTGTTGGGAGCTCC 59 5208840 5208859 GTATGCGAAGGTTGATCCTG 59 NA Rattus norvegicus 81 Rn60_X_0612.1 ENSRNOG00000051281 ENSRNOT00000076333 1 1 1 60 X 61216247 61216265 TAGCCTCTGTTTCTGACCA 58 61216205 61216223 GAAGCCTCAGCATACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 1 2 2 73 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882504 100882800 GTTCAATGGTCTCTTTGGTCG 60 NA DesignRelaxed Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 3 2 2 74 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882503 100882799 TGTTCAATGGTCTCTTTGGTC 59 NA DesignRelaxed Rattus norvegicus 81 Lce1d ENSRNOG00000046788 ENSRNOT00000012464 3 1 1 71 2 193042243 193042261 GACTCCAAAGTGTCCTCCA 59 193042190 193042208 CTACAGCAGGAAGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir871 ENSRNOG00000041334 ENSRNOT00000063087 2 1 1 60 X 151287837 151287855 CCTATTCAGATTGGTGCCG 58 151287795 151287814 ACATTATCCAGTATGGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grem1 ENSRNOG00000026053 ENSRNOT00000037895 1 1 1 135 3 105206968 105214859 GGTGACAGAATGAATCGCAC 60 105206852 105206870 CATTGTGCTGAGCCTTGTC 60 NA InUTR Rattus norvegicus 81 Map7d2 ENSRNOG00000005176 ENSRNOT00000045285 2 1 1 80 X 38400823 38409914 CAATCTATGGATGTGAGTCCTG 58 38400764 38400784 AGGAATCATTTCACTCACTGG 58 NA Rattus norvegicus 81 Atp4a ENSRNOG00000020985 ENSRNOT00000028508 3 1 1 80 1 89163651 89165132 TGATGACAATTTGTACCTGGC 59 89165173 89165192 TTGAACTCCTGGTAGTAGCC 59 NA Rattus norvegicus 81 Dagla ENSRNOG00000027264 ENSRNOT00000037624 1 1 1 80 1 226307823 226307841 CTGACCTGACAGGAGATGC 60 226307175 226307779 AGAGTACCATGCCCTTGTG 59 NA Rattus norvegicus 81 Vps4b ENSRNOG00000002705 ENSRNOT00000003715 3 1 1 80 13 26826652 26828166 TTGTTTCCATGTGGGATATGC 59 26826592 26826613 TCTTCAGTTTCAACAAGTCCTG 59 NA Rattus norvegicus 81 Prl8a4 ENSRNOG00000016803 ENSRNOT00000022614 2 1 1 80 17 39601853 39603165 CTCCCTTCTCTGGAACACTC 60 39603206 39603226 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Klk1c2 ENSRNOG00000029237 ENSRNOT00000025701 2 1 1 82 1 99983047 99983065 TCAATGAATACCTCTGCGG 57 99982111 99983004 CTGGTAATTGTTGCTATAGCAG 57 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402,ENSRNOT00000090181 3 2 2 80 1 170394829 170394994 ATCTGCTCCAAGATCATGTC 58 170394768 170394787 CACAAGTTTAGAGTGGTCCA 58 NA Rattus norvegicus 81 Crtac1 ENSRNOG00000015220 ENSRNOT00000020568 3 1 1 80 1 261546359 261546378 TTTATGGCAACTGGAATGGC 59 261544175 261546318 AAGCAATGTCCCTAAATCGGA 60 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 2 2 2 80 1 189903060 189903079 AAAGCCATTCTTCTCCAGTG 58 189902860 189903019 GGTAGGATATGTCTGGGTAGG 59 NA Rattus norvegicus 81 Edn2 ENSRNOG00000009390 ENSRNOT00000012569 2 1 1 86 5 139103746 139105709 AAAGCTGAGGGACATCTCAG 60 139105758 139105776 CTAGAGTGTGCAGGGATGG 60 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396,ENSRNOT00000091934 2 2 2 80 4 145246710 145246728 ACACTGAACCCAGTATGGC 60 145246767 145248336 GATCTTCACTGTTCTGTCATAGTC 59 NA Rattus norvegicus 81 LOC100911721 ENSRNOG00000050201 ENSRNOT00000071891 1 1 1 80 1 220310759 220310778 TACTACCTGACCAAGAAGCC 59 220310820 220311640 ATTCTTCTCATCAGCTCCGA 59 NA Rattus norvegicus 81 rno-mir-679 ENSRNOG00000036492 ENSRNOT00000054600 1 1 1 60 6 133864595 133864613 GGCTTTGAACTGTGAGGTG 59 133864637 133864655 TGTGAGGAAGACCTTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.3 ENSRNOG00000051268 ENSRNOT00000075898 2 1 1 88 X 62978110 62978128 GTCAAAGTTGCAGGCATCC 60 62978179 62979385 AGCTGCTTTCTGATTTCGTC 59 NA Rattus norvegicus 81 Dpysl5 ENSRNOG00000008996 ENSRNOT00000012273 1 1 1 80 6 26950324 26950342 TCACTAAGATCCCACACGG 59 26947804 26950280 TCTTTCCTCCAACCACTCC 59 NA Rattus norvegicus 81 Cnfn ENSRNOG00000020530 ENSRNOT00000027845 1 1 1 113 1 82234887 82235354 TGAAAGGCAAAGCCATGTC 59 82234792 82234810 TATCGTTGCAACAGTCGGT 60 NA Rattus norvegicus 81 Atg3 ENSRNOG00000002094 ENSRNOT00000002906 2 1 1 80 11 60590245 60594404 GCAGACATGGAAGAATATGAAGAG 60 60590188 60590208 AGCTTCCACTATTCTTCTGGT 59 NA Rattus norvegicus 81 Rpl24 ENSRNOG00000001611 ENSRNOT00000002194 3 1 1 100 11 47121546 47121564 AAATGTGAGTCCGCATTCC 59 47118808 47121483 TGAATTTCTTCCGACTGTCC 58 NA Rattus norvegicus 81 H2afb3 ENSRNOG00000029736 ENSRNOT00000043727 3 1 1 61 X 88602402 88602420 GACTTGGCAGTCTACAGCA 60 88602443 88602463 CGTGAGATGGTGATGAATTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgir ENSRNOG00000016756 ENSRNOT00000022461 2 1 1 80 1 78834319 78834338 AGTTTACCACCTGATTCTGC 58 78834380 78835423 GTGAATCCTCTGATCGTGAG 58 NA Rattus norvegicus 81 Rn60_X_0616.5 ENSRNOG00000051214 ENSRNOT00000076231 3 1 1 85 X 60970438 60970459 CTTAGCAAAGGTAGAAGAGGTC 58 60970503 60973697 CACATGCTTTCCAATTTCCTC 58 NA Rattus norvegicus 81 Olr409 ENSRNOG00000048611 ENSRNOT00000010341 1 1 1 60 3 16312411 16312429 GTACACTATGGTCACACCC 57 16312452 16312471 CATATCCCGATTCCTCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst6 ENSRNOG00000020455 ENSRNOT00000027727 3 1 1 80 1 220727479 220727845 GTGCAACAGGAGAAACTTCG 60 220727418 220727439 GTCATGCTTTAGAAGCTGAGTG 60 NA Rattus norvegicus 81 Syt11 ENSRNOG00000020279 ENSRNOT00000027474 1 1 1 80 2 188128621 188137954 CCAGCTTTGATGTGTCACC 59 188128559 188128579 CAAAGACAGTCACAGAGACAC 59 NA Rattus norvegicus 81 Syt11 ENSRNOG00000020279 ENSRNOT00000027474 3 1 1 80 2 188116430 188127820 AGAGGAACATTCAGAAGTGC 58 188116369 188116387 CTGTCATTCTCTGTGCGAC 59 NA Rattus norvegicus 81 Rn60_X_0632.2 ENSRNOG00000051148 ENSRNOT00000076552 3 1 1 60 X 62517066 62517084 TCAAACAAACAGCTGAGGC 59 62517107 62517126 TTTGTCATAGATGACCCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000090603 1 1 5 80 17 39376122 39377427 CCTCCCTTCTCTGGAACAC 59 39377470 39377489 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 1 2 2 94 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960735 18962015 CAGGAACACCTTACACGAC 58 NA Rattus norvegicus 81 Capn12 ENSRNOG00000020389 ENSRNOT00000027645 3 1 1 113 1 87067409 87067647 TTTCCACTTTCAGCTCTGG 58 87067722 87067742 AACTCGTTCCTTTGTTCTGAG 59 NA Rattus norvegicus 81 Slc15a2 ENSRNOG00000002305 ENSRNOT00000003189 1 1 1 80 11 66948827 66949240 CAAATGCATATGGTTTGCTCTC 59 66949281 66949299 CAGTCTAGCCAGTGTTGTC 58 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 1 2 2 80 4 118546280 118546300 ACAGAAGGACATTGAACAGAG 58 118544787 118546239 ATGCACTTCACTATAGCCAG 58 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 3 2 2 80 4 118546279 118546299 CAGAAGGACATTGAACAGAGC 59 118544786 118546239 CATGCACTTCACTATAGCCAG 59 NA Rattus norvegicus 81 Atp10b ENSRNOG00000003781 ENSRNOT00000029118 2 1 1 80 10 28807534 28810410 TGAAGACATGGACTGTCCT 58 28810451 28810472 CGTTGTATATTAGGGAAACCAC 57 NA Rattus norvegicus 81 Atp10b ENSRNOG00000003781 ENSRNOT00000029118 3 1 1 80 10 28685310 28685746 GAGCAGTTTCATAGGTGGG 58 28685790 28685808 GTGGAAGACTTCCATGGAG 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 2 3 3 81 20 9837703 9837721 TCTCCGGGTTCTTTGTCAG 59 9837766 9838818 AAGCCGTATCTGACGTAGG 59 NA Rattus norvegicus 81 Sspo ENSRNOG00000025848 ENSRNOT00000035906 3 1 1 80 4 78117019 78117253 TTGTACAGACTGTGGAGGTG 59 78117296 78117314 CCAAGGGACAGATCCTGAC 60 NA Rattus norvegicus 81 Zbtb7b ENSRNOG00000020640 ENSRNOT00000028010 3 1 1 80 2 188706111 188706130 ATATGAGGACCCATACTGGT 57 188705681 188706069 TCTTCAGCTTGTCATTCCTG 58 NA Rattus norvegicus 81 Apod ENSRNOG00000048273 ENSRNOT00000073330 1 1 1 82 11 72722050 72725829 GTTCTTCTCGTTGATGCCAC 60 72725874 72725892 TGGTGCAGGAATACACGAG 60 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 3 2 2 80 1 83191364 83192676 ATCATCAGGGAGTCTCCCT 59 83192719 83192738 CTCCAAAGACAATGGAGCAG 59 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021,ENSRNOT00000059895 3 2 2 80 10 18187823 18189253 TGACTTGCTGCAATATCGG 58 18187761 18187779 ATGAAGCTCATGTGGTCCT 59 NA Rattus norvegicus 81 Snrpe ENSRNOG00000031127 ENSRNOT00000042614 1 1 1 60 8 129371833 129371854 GTATGAACAAGTGAATATGCGG 58 129371794 129371814 GTTCATGTACTCATCAAAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl25 ENSRNOG00000028531 ENSRNOT00000037059 1 1 1 80 12 2434575 2434688 GTGCTGTGATATTCTACTTCCG 59 2434516 2434534 TCTTCACAGCCCTCTTCAC 59 NA Rattus norvegicus 81 Prkar1a ENSRNOG00000049876 ENSRNOT00000071153 1 1 1 82 10 97951769 97952451 AGGAGAAATGGATGTGTATGTC 58 97952494 97952512 AAATCAAAGCCAGCTCTCC 58 NA Rattus norvegicus 81 Tff2 ENSRNOG00000001162 ENSRNOT00000001537 3 1 1 91 20 9875297 9875910 GAGAAACCTTCTCCCTGTC 57 9875224 9875242 TTAAAGCACTGGTCACTGG 58 NA Rattus norvegicus 81 LOC100911478 ENSRNOG00000019043 ENSRNOT00000025743 2 1 1 82 9 101028461 101038496 GTGGCTTCTAGAGGTCCTC 59 101028397 101028415 CATTTGCTCCCTCTGACAC 59 NA Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 1 2 2 80 8 48573558 48573577 TGAAACAGAGGTTACAAGGG 58 48573618 48574084 GGCTCATCTCTGCATATACAG 58 NA Rattus norvegicus 81 Dnd1 ENSRNOG00000016894 ENSRNOT00000022685 1 1 1 80 18 29610142 29610161 CCTCTCAAATTGCACTGCTC 60 29609445 29610099 GTGACTGCCCTTCTACCAG 60 NA Rattus norvegicus 81 LOC100910077 ENSRNOG00000030000 ENSRNOT00000040297 3 1 1 60 8 42613656 42613677 AATATACAGAGACCCATTTCCC 58 42613696 42613716 ACCGTGATAACATAGATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r60 ENSRNOG00000040198 ENSRNOT00000041244 1 1 1 85 12 4378646 4378664 CCTTATGGTCCACTTGGTC 58 4378713 4429170 ATAGACCTGGGAGTCTCTG 57 NA Rattus norvegicus 81 Rad51 ENSRNOG00000037302 ENSRNOT00000056432 1 1 1 80 3 110939177 110939195 AGGGTTCAACACAGACCAC 60 110939238 110940892 ATAAGCAGTGCATACCTGGA 59 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497,ENSRNOT00000030259 3 2 2 152 1 69738151 69739294 CTGACTCCAGGTTGTTGGA 59 69738017 69738035 GATCGTCACATTGTCCGTG 59 NA InUTR Rattus norvegicus 81 AC141516.3 ENSRNOG00000061814 ENSRNOT00000083415 1 1 1 80 11 87276612 87276963 AAGTGGCATTCAAAGGCTC 59 87277005 87277025 CGTTGTCATTCTCAGACATGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 1 2 3 80 5 48281271 48282412 CCTTCATGGAGCATAAGGAC 58 48282455 48282473 TAGAGAACCTATGGCTCCC 58 NA Rattus norvegicus 81 LOC317456 ENSRNOG00000003883 ENSRNOT00000005153 3 1 1 114 X 43881280 43881450 GAAACACAGGGCAAATGGT 59 43881523 43881546 CCCTGTCTTATAAAGAAGTCTCCA 60 NA Rattus norvegicus 81 RGD1565844 ENSRNOG00000004120 ENSRNOT00000020999 3 1 1 80 X 32496307 32496326 GTGAACATGACTAGACAGCG 59 32496369 32496495 CAGCTGAAGATTCACTGGC 59 NA Rattus norvegicus 81 Rab2a ENSRNOG00000005963 ENSRNOT00000008522 2 1 1 83 5 21653278 21653299 GTTGGTAAATCGTGCTTATTGC 59 21653340 21663958 ACCAAACTCTACACCAATTGTG 59 NA Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 1 2 2 80 4 78322446 78322466 ATCTGAACTACAATGGAAGCC 58 78322508 78325808 TATTCCAAGCTCATGGCTG 58 NA InUTR Rattus norvegicus 81 Psme2 ENSRNOG00000019246 ENSRNOT00000026279 1 1 1 80 15 34268518 34268626 AAGAAAGAAGTCCCTAAGTGTG 58 34268459 34268478 GACTTCTGGCTTAACCAAGG 59 NA Rattus norvegicus 81 Rit1 ENSRNOG00000020232 ENSRNOT00000027455 3 1 1 80 2 188087741 188087760 TTTGAAGCCATGACAATGCA 59 188087797 188095930 GATCTTATAGGCATCTTCAATGGTG 60 NA Rattus norvegicus 81 Car5b ENSRNOG00000029330 ENSRNOT00000047354 3 1 1 80 X 32255247 32255266 CTCCACATCTGGAACAATGG 59 32255308 32265132 GGGTCCTCCCTCAATTACTG 60 NA Rattus norvegicus 81 Klc2 ENSRNOG00000020299 ENSRNOT00000041238 1 1 1 82 1 220497218 220497236 AAACATCAGGCCATGACCA 60 220496283 220497175 CTTGTACTTATTCTGGTCCCGA 60 NA Rattus norvegicus 81 AABR07029925.2 ENSRNOG00000060650 ENSRNOT00000074380 3 1 1 80 10 60190784 60190803 GTGTCTGGTGCTTATGTCCT 60 60151462 60190743 CAGAATGACAATCTAGCCACG 59 NA Rattus norvegicus 81 St3gal6 ENSRNOG00000001653 ENSRNOT00000002255 3 1 1 80 11 44207121 44207143 TATTCTTGAGCTCCATCTTCCTC 60 44207181 44212312 CCTCATTTGGGAACCAATAGC 59 NA Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 1 2 2 80 17 39546324 39547345 CAATCTCTAGGAAGTGATCCGA 59 39547383 39547404 ATGATTTAGAGCATTGGTCCAG 59 NA Rattus norvegicus 81 Cd200 ENSRNOG00000002141 ENSRNOT00000058453 1 1 1 81 11 60380244 60380262 CTTTCTGCCATCTGTCCAC 59 60380307 60383255 GTCACCACTTCCACTTGAG 58 NA Rattus norvegicus 81 AABR07060992.1 ENSRNOG00000045682 ENSRNOT00000011067 3 1 1 82 4 102290372 102290722 TTTGGATTCCAGCTTCCAG 58 102290767 102290786 AGAAGCTTGATCTCCAAGTC 57 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 2 2 2 80 5 138181524 138181818 CCAATATGTGGAGCAACTGTG 60 138181855 138181878 TAGGTGAAGATGAAGAAGAGTACC 60 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248,ENSRNOT00000075545 2 2 2 106 20 10440079 10440099 CTTGGATGTGAAGCACTTCTC 59 10440167 10441472 TGTAGCCATGGTCATCCTG 59 NA Rattus norvegicus 81 Olr1304 ENSRNOG00000039239 ENSRNOT00000060095 3 1 1 60 8 43234385 43234403 ACCAAGGGAAAGTGTCCTC 59 43234343 43234361 ATCAGAGGGTTCAGCATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910822 ENSRNOG00000046892 ENSRNOT00000049709 3 1 1 60 8 41954897 41954915 TCTTCTATGGATCTGGGCT 57 41954939 41954957 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560695 ENSRNOG00000028519 ENSRNOT00000029394 2 1 1 60 1 18354407 18354492 GAAAGGATGATGACTCAGAAGTG 59 18354509 18354530 CACGCTTCGATCTCTAAATCTC 59 NA DesignRelaxed Rattus norvegicus 81 Zfp395 ENSRNOG00000014191 ENSRNOT00000044562 1 1 1 80 15 48795834 48795852 GATCATGGCTTTGAGACGG 59 48795895 48796375 CACCTTCACAGAGTTCTTCC 58 NA Rattus norvegicus 81 Slc18a1 ENSRNOG00000011992 ENSRNOT00000016193 3 1 1 80 16 22393036 22393275 TGCTATTGGCCCATCTACTG 60 22393315 22393336 TTGATGGTACCAATGATGACCA 60 NA Rattus norvegicus 81 RGD1559536 ENSRNOG00000039250 ENSRNOT00000060113 1 1 1 81 X 42952703 42953619 GTTCAGGCGTCCAGTAGAG 60 42953664 42953682 ATTGGTTGCACAGACTGGA 60 NA Rattus norvegicus 81 Mrs2 ENSRNOG00000017545 ENSRNOT00000023787 2 1 1 80 17 42073329 42075561 AGTACTGGATCAACACCCT 58 42075605 42075623 GGTCCACTAATGCATCCAG 58 NA Rattus norvegicus 81 Agtr1a ENSRNOG00000018346 ENSRNOT00000038532 2 1 1 81 17 35909069 35948525 GATCACCAGGTCAAGTGGA 59 35909006 35909024 AGCAGAAGAGTTAAGGGCC 59 NA InUTR Rattus norvegicus 81 AABR07038349.1 ENSRNOG00000038383 ENSRNOT00000058456 1 1 1 80 X 46629839 46629860 ATCTTGAAATCCATAGCTCTCC 58 46628492 46629798 CAATGCATGTTGTCTCCAG 57 NA Rattus norvegicus 81 AABR07038349.1 ENSRNOG00000038383 ENSRNOT00000058456 2 1 1 80 X 46629838 46629859 TCTTGAAATCCATAGCTCTCCT 59 46628491 46629798 TCAATGCATGTTGTCTCCAG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898,ENSRNOT00000086644,ENSRNOT00000011340,ENSRNOT00000041253 2 4 4 80 10 39207909 39207930 GCACCACATTTATGATCTGGTC 60 39206124 39207868 GATATGGTCAGCCACAGGA 59 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384,ENSRNOT00000079335 3 2 2 89 1 190591156 190591176 CGAGGCTTTATTGAAATACCC 57 190586540 190591106 TTTCTTTGGTGTATGTGGGA 57 NA Rattus norvegicus 81 Ifitm2 ENSRNOG00000014936 ENSRNOT00000020216 3 1 1 84 1 213750533 213751102 CTGTGAAGTCCAGGGACAG 60 213750467 213750485 CTGATGTTCAGGCACTTGG 59 NA Rattus norvegicus 81 Rps25 ENSRNOG00000027503 ENSRNOT00000029546 2 1 1 71 8 48728271 48729500 CTTAGTAAAGGACTTATCAAGCTGG 59 48729529 48729547 ACCCTTTGTGTTTCTGGTG 58 NA DesignRelaxed Rattus norvegicus 81 Nefm ENSRNOG00000013916 ENSRNOT00000018637 3 1 1 80 15 44858608 44858627 CGTCATTTGCGAGAATACCA 59 44857127 44858567 CAGTAGTTTCCTATATGGGCG 58 NA Rattus norvegicus 81 LOC689569 ENSRNOG00000039574 ENSRNOT00000060660,ENSRNOT00000071469 3 2 2 81 17 14518592 14518861 CCTATGGAAAGTCCCACCAG 60 14518901 14518923 GCTGATGCAGTATCTCTTTACAG 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617,ENSRNOT00000000618 1 2 2 80 20 5973243 5973261 CACTCGGCTGACATAATCC 58 5973565 5974872 ATCCAGAATCTTCAGCTCAC 57 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102,ENSRNOT00000078175 1 2 2 80 4 114892412 114892432 GAGCGAATCGAGAAAGTTCAG 60 114892471 114892716 TGTCTCCTCAAACTCTTTCTCC 60 NA Rattus norvegicus 81 Pcnxl4 ENSRNOG00000005568 ENSRNOT00000007369 2 1 1 80 6 95350543 95350562 TTCCAGACTCTATTCCCACC 59 95350605 95350757 GTTTGGCAACTGATGACGA 59 NA Rattus norvegicus 81 Acot13 ENSRNOG00000018415 ENSRNOT00000024878 2 1 1 99 17 42251215 42253380 AACATAACGTACATGTCACCTG 59 42253440 42253458 GATCCACTGAGGCAAATGC 59 NA Rattus norvegicus 81 Mir105 ENSRNOG00000059896 ENSRNOT00000085343 3 1 1 60 X 152585582 152585600 TCAAGTGCTCAGATGTCTG 57 152585540 152585560 ATAGCACATGCTCAAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep3 ENSRNOG00000032136 ENSRNOT00000048711 1 1 1 80 6 1924174 1942761 TGGAGACAGCTGGTTTCTC 59 1924112 1924134 TCTAGCTCAACAGAGATCTTTCC 60 NA InUTR Rattus norvegicus 81 Myadml2 ENSRNOG00000036681 ENSRNOT00000054948 1 1 1 60 10 109826285 109826303 AGTGTATACCTTCCTGGCT 57 109826243 109826262 GAAGACTGGCCAAATGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc46a2 ENSRNOG00000017324 ENSRNOT00000023588 2 1 1 80 5 77170937 77172245 TTCTATATTGCCCGAGCTG 57 77170875 77170894 CTTTACAAGCTTGGACATGG 57 NA Rattus norvegicus 81 Primpol ENSRNOG00000022320 ENSRNOT00000029868 2 1 1 85 16 48887865 48890107 GCAATGTCAGATTCTCAGACAC 60 48890150 48890171 ACTGTTAGAATATTCAACCCGC 59 NA Rattus norvegicus 81 LOC102549011 ENSRNOG00000050178 ENSRNOT00000072727 3 1 1 79 X 51792423 51792442 AATTAAGACCAAAGCTGCCT 58 51792184 51792202 TTCCACGTTTGTTGGTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Mapk13 ENSRNOG00000000515 ENSRNOT00000000621 3 1 1 80 20 6020194 6023661 CAAGATTTCTACCTGGTGATGC 60 6023700 6023720 GACCTTCTCCTCACTGAACTC 60 NA Rattus norvegicus 81 Olr456 ENSRNOG00000061609 ENSRNOT00000092148 2 1 1 60 3 73138969 73138989 CTTGTACTATGGCTCCATCCT 59 73139009 73139029 ATCTAAAGAGTAGCTGGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou3f4 ENSRNOG00000002784 ENSRNOT00000003724 1 1 1 60 X 82144577 82144595 AATAAGTGGCTGGAGGAGG 59 82144618 82144637 CGATCTTGTCAATGCTGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr4 ENSRNOG00000010315 ENSRNOT00000013705 2 1 1 60 8 122530988 122531007 CATTCACTGCTGCCTTAACC 60 122530947 122530966 GTACTTGCGGAATTTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 3 1 1 61 1 239209399 239223102 CTGTCAAAGCCTAAGAAATGTG 58 239209359 239209380 ATGTGGTAAGAGTCCTTTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Plcxd3 ENSRNOG00000014550 ENSRNOT00000019524 3 1 1 80 2 54302510 54359938 AACAATCACAGAAAGAGCTCTC 59 54359978 54359997 ACAATATTGATGCCGCTCTC 59 NA Rattus norvegicus 81 Cd14 ENSRNOG00000017819 ENSRNOT00000023977 3 1 1 127 18 29561790 29561899 CGACCATGAAGCTTATGCT 58 29561681 29561699 TGAGAAGTTGCAGTAGCAG 58 NA InUTR Rattus norvegicus 81 Golga3 ENSRNOG00000037437 ENSRNOT00000056656 2 1 1 80 12 52537534 52537552 AGAAACTCAGCACAGATCC 57 52534766 52537491 TGATCTAACATGTCAGCCTC 57 NA Rattus norvegicus 81 Ibtk ENSRNOG00000027728 ENSRNOT00000056930 3 1 1 80 8 93372832 93374917 AATGTACCCAGACAGATACAG 57 93372772 93372790 CACTGTATGAAACCTGCCT 58 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 1 2 2 80 10 40262369 40265631 CTAAGATTGAGATGGAAGAGACTG 59 40262312 40262330 GCAGGTACTTGACCTTCTG 58 NA Rattus norvegicus 81 Prop1 ENSRNOG00000003671 ENSRNOT00000004872 1 1 1 81 10 36451045 36451065 GAACCAGTATCCTGACATCTG 58 36450250 36451002 GAACCAGACCTGGATTCTG 58 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 3 2 2 80 X 44976229 44979111 TCCAAGGACATACTAATGAGGT 59 44979152 44979170 TCATGTCATCAGAGCAGGA 58 NA Rattus norvegicus 81 Mmp16 ENSRNOG00000005708 ENSRNOT00000050137 3 1 1 80 5 31801650 31801672 GGTATTGATTCTGCCATATGGTG 60 31801707 31803617 TTCACTATATCTCCAATACCGGTC 60 NA Rattus norvegicus 81 Rhag ENSRNOG00000050121 ENSRNOT00000072144 1 1 1 80 9 23469446 23470730 GGAAGTCTACAGTGTCCAC 57 23469384 23469402 CCAAACCTCCAACAATTGC 58 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 1 2 2 80 13 89392364 89395470 CAGATAAGCATAGGAGATCCGA 59 89395511 89395529 GAGTCCTATCAGCAGGCAG 60 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 3 2 2 86 3 123690557 123693736 CTAGTCAAGGTAGGCTTCCT 58 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719,ENSRNOT00000080684 1 4 4 80 17 43522914 43523203 ATATTGCTCCAAGGTATGCCA 60 43522854 43522874 CAATGGGTACCATTACAGCAG 59 NA Rattus norvegicus 81 LOC100909409 ENSRNOG00000046751 ENSRNOT00000042150 1 1 1 80 19 27840026 27840674 CTTCTATCGCAACCTGCAC 59 27840717 27840736 CTCTCCTGCTTCAATGTGAC 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000016093 1 1 2 115 5 154902099 154903607 ATCAAACGTGGAGGAAGGG 60 154903686 154903704 AAACTCGCTCAGACTCTGG 59 NA Rattus norvegicus 81 Zfp804b ENSRNOG00000031306 ENSRNOT00000045346 2 1 1 98 4 24222549 24222570 CCAAATCATGGAAAGATGAGAG 57 24222627 24228370 CGTTTCCAGAAACACATTCAG 58 NA Rattus norvegicus 81 Tmem199 ENSRNOG00000009896 ENSRNOT00000013220 3 1 1 81 10 65778127 65778145 GGATCACTCGAAACGTCAC 59 65777037 65777261 TTCACTGACCTCACTTGCT 59 NA Rattus norvegicus 81 Ppp2r2a ENSRNOG00000011158 ENSRNOT00000015318 1 1 1 80 15 43681921 43682862 GTCACTACACTACGAGTGC 58 43681859 43681877 GGCGTTGGCAAATATTCTC 58 NA Rattus norvegicus 81 Golt1b ENSRNOG00000058386 ENSRNOT00000084700 2 1 1 80 4 176615334 176615353 GTGGTGGTTGGCTTTATCAG 59 176615391 176617325 CTTGTCTACGAATGATCTGATTCC 60 NA Rattus norvegicus 81 Acer2 ENSRNOG00000007637 ENSRNOT00000010056 2 1 1 80 5 105243343 105244071 CCTAGTTGTAGTGGGAATCG 58 105244114 105244132 ATGGCAAGTTCATCAAGCA 58 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 2 3 3 81 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528277 53529909 GTTCACAAGCCATGATGCA 59 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000045833 3 1 2 84 15 45747481 45777987 AAGATCCTTCTGCAGGCTC 60 45778033 45778053 AATGAGGCTTCTTCTCAGAGG 60 NA Rattus norvegicus 81 Mir3563 ENSRNOG00000035507 ENSRNOT00000053630 1 1 1 60 6 133859369 133859387 CAAGAAGCGGTTTACCGTC 59 133859327 133859345 AAATGGTTTACCGTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp74 ENSRNOG00000048894 ENSRNOT00000073092 3 1 1 80 1 88235766 88240051 GAGTCTGAGGGACTAGTGAC 59 88235705 88235723 CTGAGTAGGATCCAGCTGC 60 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 3 2 2 80 1 274330908 274333234 AGGAATTGCTAGATTGGCTC 58 274333276 274333295 GATGTAAACTGGCTTCCTCG 59 NA Rattus norvegicus 81 S1pr2 ENSRNOG00000020653 ENSRNOT00000028034 2 1 1 150 8 21995777 21995796 CAACAGTCACCAAAGTCAGC 60 21987494 21987512 TCTGAGTATAAACCGCCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724,ENSRNOT00000006832 3 2 2 80 6 7835626 7837407 AGATGCGTAGAAGAGATGGA 58 7837450 7837468 CAACTTTCTCTGGCTCCTG 58 NA Rattus norvegicus 81 Card11 ENSRNOG00000024277 ENSRNOT00000051382 1 1 1 80 12 15834291 15835857 CTCCTGCAGTTTGTCAGTC 59 15835899 15835919 ACTCCCAGAGATGATTCTCAC 59 NA Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699,ENSRNOT00000081105 2 2 2 80 17 42590201 42594009 TATGAAGAAATCCGCAGCC 58 42590139 42590159 TCCAATATACAGGTCATCCCA 58 NA Rattus norvegicus 81 AABR07052753.1 ENSRNOG00000009376 ENSRNOT00000012416 1 1 1 84 3 72786499 72786517 AACATGAAAGTGGCCTCTG 58 72786431 72786454 CTGAGACCTCTTTATTCAAGGT 58 NA Rattus norvegicus 81 LOC102554388 ENSRNOG00000048510 ENSRNOT00000071412 3 1 1 60 8 41916767 41916787 ACATTCTTGGTTTCCATGCTG 60 41916808 41916827 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per2 ENSRNOG00000020254 ENSRNOT00000027506 1 1 1 80 9 98584114 98586620 AGGTGAAGGCTAATGAGGAG 59 98584053 98584071 TGTAGGAAGGCACATCCAC 59 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 1 1 2 60 X 53234650 53234806 TACTACCAATGCCAGGGTC 59 53234608 53234627 GTCTTAGAGCTGCTTCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Vmo1 ENSRNOG00000026508 ENSRNOT00000029421 1 1 1 152 10 57121275 57121404 TTCTCTGTCAAGGTGGAGC 59 57120828 57120846 CAGAGGCTCACTCCATGAG 60 NA Rattus norvegicus 81 Slc36a3 ENSRNOG00000021310 ENSRNOT00000037274 1 1 1 80 10 40469375 40473390 TTCGAGTATCTCATCCAGATCC 59 40469316 40469337 GCCAAAGAACAACAAGAAAGTC 59 NA Rattus norvegicus 81 Sned1 ENSRNOG00000023548 ENSRNOT00000022290 2 1 1 80 9 100415574 100420345 CCAGTGCATTGAAGTAGATGAG 59 100420386 100420404 TGGTAACCAGCAATGAGGT 59 NA Rattus norvegicus 81 Olr1069 ENSRNOG00000033263 ENSRNOT00000044882 3 1 1 60 7 9465062 9465081 TGGCTCCTATATCTGTGGGT 60 9465021 9465040 CAAGCTGAAGGTGAATCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 1 2 2 80 3 129077724 129077742 CATCCTCAAGGACACTCGT 59 129062166 129077683 ATAATCCACCTTTGGAATGCAC 59 NA Rattus norvegicus 81 LOC100912634 ENSRNOG00000032845 ENSRNOT00000064243 3 1 1 80 17 42849853 42850515 GACCTTATACAACAGGACTCAG 58 42849794 42849812 TCTTTGAGTCCAGACCAGG 59 NA Rattus norvegicus 81 S1pr4 ENSRNOG00000005370 ENSRNOT00000007117 1 1 1 60 7 11078405 11078425 CTCTACTCCAAGGGCTATGTG 60 11078445 11078465 TAGTCACTAGGATTAGGGCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000071932 2 1 3 80 11 45899625 45901358 CCTTGCCTGAGTCTGAGAG 60 45901396 45901420 TGATATCATTAACTCTGACCTCTCC 60 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 1 2 2 80 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238662 ATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Irak1bp1 ENSRNOG00000008984 ENSRNOT00000068482 3 1 1 83 8 90343592 90343610 AGAGGCCAAGAAGAGTGTG 59 90343654 90350579 GTTACATTCTCTGTCTGCACAC 60 NA Rattus norvegicus 81 St3gal4 ENSRNOG00000009850 ENSRNOT00000013243 2 1 1 80 8 36274410 36274707 CAAATCTCACTGGAAGCTCC 59 36274349 36274367 CTGTCTTCTCGGGAGATGG 59 NA Rattus norvegicus 81 Bcam ENSRNOG00000029399 ENSRNOT00000045574 2 1 1 80 1 80676870 80677045 CGAGGAGATACTACTCCAGC 59 80676809 80676827 GCTGGTGACTTTCAAGGTC 59 NA Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 3 2 2 80 3 7053733 7053751 GCAGAATGGAAGGAAGGTC 58 7053795 7054271 ATCCTGCTCTGGAAATCGT 59 NA Rattus norvegicus 81 Cox7a2l ENSRNOG00000004526 ENSRNOT00000065464 2 1 1 114 6 6696608 6697744 TTCTTCCAGAAGGCTGACG 60 6696512 6696530 CGATCAGGCAGTAGATGGT 59 NA Rattus norvegicus 81 Trat1 ENSRNOG00000029564 ENSRNOT00000059924 3 1 1 83 11 54630098 54630118 TTTCCCACTATGTAGAGAAGC 57 54638263 54646671 CATAATATTCTTCAGCCCTTGG 57 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 1 3 3 89 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738158 97738176 CCATGACATTCAGCTGCAG 59 NA Rattus norvegicus 81 Mtmr9 ENSRNOG00000011560 ENSRNOT00000015452 3 1 1 80 15 46712521 46715503 TCTACTCTTCTGCTACCAGTG 59 46712461 46712479 CAGTTGGTGGGTAGGTAGG 59 NA Rattus norvegicus 81 B4galnt1 ENSRNOG00000004839 ENSRNOT00000046099 3 1 1 80 7 70456790 70456811 TCACCATCCTCATAAGACATCC 60 70456852 70456993 TGATGTTGTACTGGGCTCC 59 NA Rattus norvegicus 81 Tmem252 ENSRNOG00000025476 ENSRNOT00000035123 1 1 1 80 1 242572812 242572832 CAAAGAGATGTTCAACCACGT 59 242572874 242576100 AAGTCAGGCCTGTCTACAG 59 NA Rattus norvegicus 81 RGD1564704 ENSRNOG00000031283 ENSRNOT00000044808 3 1 1 60 X 79743076 79743097 ACTGAAGAACCACATTAACCAC 59 79743037 79743056 AAACATCAAGGTGTCATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chl1 ENSRNOG00000045771 ENSRNOT00000073039 1 1 1 80 4 70279886 70286100 TCATAGTAGAAGAGCCTCCC 58 70286143 70286161 ACAACAAGATACCGTTGCT 57 NA Rattus norvegicus 81 Olr1321 ENSRNOG00000055420 ENSRNOT00000085286 1 1 1 60 8 43645025 43645043 CATTGACCTCTGCCATTCC 59 43645067 43645085 CACTGCCACAAAGTTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfaip8l1 ENSRNOG00000045999 ENSRNOT00000074502 3 1 1 60 9 10897183 10897202 CCAGAAGAAAGTCCTCAGCA 60 10897142 10897162 GTCATCCACAAATACAGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il36g ENSRNOG00000005701 ENSRNOT00000007512 1 1 1 80 3 1286897 1287751 CACTGTAACTCCAGTCACTG 58 1287794 1287812 TAAATGGGAGTCCCTTTGC 57 NA Rattus norvegicus 81 Pten ENSRNOG00000020723 ENSRNOT00000028143 3 1 1 94 1 251461650 251463517 ATTTAACTGCAGAGTTGCACAG 60 251463570 251463590 GCCATTGGTCAAGATCTTCAC 60 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 2 2 2 80 17 42724831 42726631 AACAGACACATTCAGATGTCCT 60 42724772 42724792 GTACAAGATGTTCCAGAGGGT 60 NA Rattus norvegicus 81 Atp6v0d2 ENSRNOG00000006926 ENSRNOT00000009334 1 1 1 80 5 33846955 33852465 CATTCTTGAGTTTGAGGCCG 60 33846894 33846915 CTGTCTTCTTTGCTCAGTTCAG 60 NA Rattus norvegicus 81 Dpysl4 ENSRNOG00000027582 ENSRNOT00000029587 1 1 1 80 1 211434790 211435315 AGAGCCATAACCTGAATGTAGAG 60 211435355 211435373 CCTGACTTATGACCACCGT 59 NA Rattus norvegicus 81 Cdh6 ENSRNOG00000013535 ENSRNOT00000018246 3 1 1 80 2 63119576 63119594 ATGAACCTCCTGACATCCA 58 63119513 63119535 AGCCTATGGATGTGTATATCTG 57 NA Rattus norvegicus 81 Rwdd3 ENSRNOG00000029893 ENSRNOT00000040080 3 1 1 81 2 224713362 224723003 CTGTTCAGAGACAGATGGG 57 224713299 224713317 CAACTCTAAGGGCACATCC 58 NA Rattus norvegicus 81 LOC100911271 ENSRNOG00000042112 ENSRNOT00000065485 3 1 1 80 4 69435736 69435848 TGTTTCTTGAGAGCAGAACC 58 69435890 69435909 TACTTCTTGTCCCTTCCCTG 59 NA Rattus norvegicus 81 Fzd7 ENSRNOG00000016119 ENSRNOT00000021569 1 1 1 60 9 66306901 66306919 TGCTCACCTACCTAGTGGA 59 66306942 66306961 AGGAAGATAATGGGTCGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lef1 ENSRNOG00000010121 ENSRNOT00000013694 2 1 1 80 2 236237452 236237472 TGATGCCCAATATGAATAGCG 59 236237512 236307882 GCACTTTATTTGAGGTCCTCG 59 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162,ENSRNOT00000050547 3 2 2 81 13 90274630 90274651 ACTTATACATGTACAGCCTCGA 59 90274693 90275059 TGGGAGAGTCTGTACATGG 58 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 2 2 2 80 11 57247457 57254071 CTAGTTCACAGGAATCTCCCT 59 57254113 57254131 TGTGATGATGTTGACACCC 58 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 1 2 2 80 3 5720481 5720775 ACTTTCAGGAGATCAGAATGCT 60 5721198 5721217 TGTTGTATGTGCACGAAGTG 59 NA Rattus norvegicus 81 Ubr5 ENSRNOG00000006816 ENSRNOT00000009115 3 1 1 80 7 76808796 76808815 TTTATTCGTCATCTGCCGGT 60 76807808 76808755 TAGTTGGAAGAACCTCGAGAC 59 NA Rattus norvegicus 81 Foxp1 ENSRNOG00000009184 ENSRNOT00000013271 3 1 1 81 4 131391620 131403380 AGTTAGAGCTACAGCTTGC 57 131391557 131391576 TTGGGTTCTGTAGACTTCAC 57 NA Rattus norvegicus 81 AABR07051726.1 ENSRNOG00000046324 ENSRNOT00000075136 3 1 1 60 3 20163436 20163456 GGAAACACCTATTTAGCGTGG 59 20163477 20163496 AGATGAGGATCTGAGGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr469 ENSRNOG00000031426 ENSRNOT00000051690 1 1 1 60 3 73308068 73308087 ACACCCATGTACTTCTTCCT 58 73308110 73308128 CAGTGGTGGCATAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr469 ENSRNOG00000031426 ENSRNOT00000051690 2 1 1 60 3 73307973 73307993 CTGTGCTCTTTGTGGTATTCC 59 73308014 73308033 ATGCTCACATTACCAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr477 ENSRNOG00000031811 ENSRNOT00000040714 1 1 1 60 3 73426005 73426024 GTTGACCTCTGTTACTCCTC 57 73426047 73426065 GCTCCACCACAAAGTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pglyrp4 ENSRNOG00000021798 ENSRNOT00000029771 2 1 1 80 2 190132571 190143586 AGAAGAAAGCAGCTTGTCC 58 190143629 190143648 GCAGAGTCATCTTGAAGCAG 59 NA Rattus norvegicus 81 Pglyrp4 ENSRNOG00000021798 ENSRNOT00000029771 3 1 1 80 2 190128820 190128838 TCTGTAGCCAGAAGCTTCG 60 190128880 190130227 CAACCAGGAAATTGTAAGCCA 59 NA Rattus norvegicus 81 Ncbp1 ENSRNOG00000023605 ENSRNOT00000030825 3 1 1 80 5 61764895 61765993 TCTTCCTACAGCATCACCA 58 61766037 61766055 GAGGATCTAACTCTGCCGT 59 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 3 2 2 82 19 25789029 25789047 ACAGATGAGCAGTACCGTC 59 25788885 25788984 TCCACCTTCTCAACTGTCTG 59 NA Rattus norvegicus 81 Prmt2 ENSRNOG00000001297 ENSRNOT00000050531 3 1 1 80 20 13203117 13203136 GAAAGACTACCACAGCAAGG 59 13203176 13209111 TTGATTGCTAACGACTTGAGTG 59 NA Rattus norvegicus 81 Cdh17 ENSRNOG00000015562 ENSRNOT00000021612 3 1 1 80 5 25419368 25419388 TCTGTTCTCTTCAAGTCAACG 58 25419428 25421193 GAGTCTTGCTTCCATAGTCTG 58 NA Rattus norvegicus 81 Thsd7b ENSRNOG00000003878 ENSRNOT00000005212 2 1 1 80 13 46885794 46888106 TGTGAGGAGCGTAATCTGG 59 46888150 46888168 TGAGAGCTGACAGTTGACC 59 NA Rattus norvegicus 81 Chst2 ENSRNOG00000047734 ENSRNOT00000075305 2 1 1 60 8 103188960 103188978 GGTGAGGTACGAGGATCTG 59 103188918 103188936 AAAGTCATACACCCTCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067499.1 ENSRNOG00000038911 ENSRNOT00000059478 3 1 1 81 9 49448146 49448164 CCACTCCTAACTTGGACAC 58 49445667 49448103 ACAGTCGCTGTAATATGTCTC 58 NA Rattus norvegicus 81 Mir410 ENSRNOG00000035557 ENSRNOT00000053680 1 1 1 60 6 133893998 133894016 CTTGAGGAGAGGTTGTCTG 57 133894038 133894058 GCCATCTGTGTTATATTCGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pou3f3 ENSRNOG00000038909 ENSRNOT00000050922,ENSRNOT00000077111 1 2 2 60 9 49480245 49480263 CAATGTGTTCTCGCAGACC 59 49480287 49480305 GTTCTTGAAACTGAGCTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 1 2 2 80 2 118957608 118957631 CAGAGCTAAACAGATACTAGACAC 59 118957667 118959057 GAATAAACCCTCTTCTCTGCTG 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 1 2 2 80 3 57389834 57389853 TGGAAGCGAGATTTACTGGA 59 57376327 57389791 TTGTTGAAGCTTTCGCTCC 59 NA Rattus norvegicus 81 Bmpr2 ENSRNOG00000022196 ENSRNOT00000035238 2 1 1 80 9 66620528 66647085 TACAACACCACTCAGTCCG 59 66647127 66647147 GCTAATACAGAAACCGATGCC 60 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 3 2 2 80 3 138381648 138381763 AAACTTAGGAAAGTGGAAGGTC 58 138381589 138381609 GTTGAGCATGTAGTATCGGAG 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 1 2 2 80 1 219155226 219155245 AATTGAGTTCATCAACCGGA 58 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 Irx6 ENSRNOG00000011037 ENSRNOT00000014831 2 1 1 81 19 15729644 15730382 GACACCAAAGACGCTACTG 59 15729581 15729599 CTTCCTCCTCTTCCTCCAG 59 NA Rattus norvegicus 81 Ccna1 ENSRNOG00000014052 ENSRNOT00000040002 3 1 1 80 2 144462268 144462287 TGCATGTCTGTTCTGAGAGG 60 144461121 144462231 GTATATCTCTTCGTATTTCGAAGCC 60 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000077573,ENSRNOT00000088815 2 3 3 80 3 72407031 72407049 TCTGTGACATCATCCTGCT 58 72406468 72406987 TTGTCTCAGTCACCTCCTC 58 NA Rattus norvegicus 81 Cdc42ep4 ENSRNOG00000028946 ENSRNOT00000048264 1 1 1 60 10 102247088 102247106 CCACATCGTCCAAACTCAG 59 102247046 102247065 GACTGTGAACGTTTACTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000041631,ENSRNOT00000027918 1 3 4 80 15 34751610 34752124 TGGAGCTGAGGAGATTATCG 59 34752165 34752185 TCAGTGACGATCTTCAGAAGG 60 NA Rattus norvegicus 81 Gmppb ENSRNOG00000037229 ENSRNOT00000026854 1 1 1 80 8 116827154 116827173 ACCATGTGATCCTAGCAGTG 60 116827216 116827321 GGATTCCAAGCCTTTGCTC 59 NA Rattus norvegicus 81 Olr752 ENSRNOG00000029895 ENSRNOT00000040444 3 1 1 60 3 102529814 102529833 TTCTTCTTGCTTCTCCTCTC 57 102529856 102529874 CTGAAGACCTTTGCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 2 2 4 80 1 267625417 267625437 AATCTACAGCATGAGGTTCTG 58 267625478 267627769 ATGATTTCATGCCTGATGCT 58 NA Rattus norvegicus 81 Gpr82 ENSRNOG00000039762 ENSRNOT00000060992 1 1 1 60 X 9999340 9999359 ACCACAGCTTTACCAATCAC 59 9999299 9999318 GTGAGTTTCCAAAGAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crk ENSRNOG00000025792 ENSRNOT00000006407 1 1 1 60 10 63841132 63841152 CTAATGCCTACGACAAGACAG 59 63852452 63852471 TTCGTAACCTTTACCAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Prmt10 ENSRNOG00000012928 ENSRNOT00000017347 2 1 1 80 19 34091801 34091821 GTTTGGAGAAGGAATTGTGGA 59 34090362 34091760 CCACTTTCACCTTTGGTCTG 59 NA Rattus norvegicus 81 RT1-M6-2 ENSRNOG00000040052 ENSRNOT00000041500 3 1 1 80 20 2078172 2078312 CTCACACTGAGATGGAAACC 58 2078355 2078373 AATGGTGACAAACCCAAGG 58 NA Rattus norvegicus 81 Shpk ENSRNOG00000019458 ENSRNOT00000026351 2 1 1 80 10 59783162 59787950 TGACAGACCTAGGTCTGGA 59 59787994 59788012 GGGTATCTTTCTGCTGTGC 59 NA Rattus norvegicus 81 Calb1 ENSRNOG00000007456 ENSRNOT00000010845 2 1 1 80 5 29539061 29539079 TACCTGGAAGGAAAGGAGC 59 29539122 29542655 AGGTGATAGCTCCAATCCAG 59 NA Rattus norvegicus 81 Rn60_X_0598.1 ENSRNOG00000031719 ENSRNOT00000046065 2 1 1 60 X 59149705 59149725 AAATACATTGAACGGCTCCAG 59 59149746 59149765 GTGAGCCATCTGATTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r22 ENSRNOG00000025949 ENSRNOT00000038190 3 1 1 60 1 61625754 61625774 GGTTCTCATACTTCATAGGCA 57 61625714 61625732 AGATACTTTGGCACTGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 2 2 2 96 10 49004714 49005084 CAAGTCTCAGGTGGAGGAC 59 49004636 49004655 GAATTCCTCCAGGTCAAAGC 59 NA Rattus norvegicus 81 Tceal6 ENSRNOG00000046390 ENSRNOT00000074255 2 1 1 60 2 102370362 102370380 CTTACAGGACAGGCATGTG 58 102370320 102370340 CCTTGTCATATCTGCACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683,ENSRNOT00000064715 2 2 2 80 2 188527630 188527648 ATGGAGCTATTCTGCTGGT 59 188526667 188527586 TCTGGTATAGGTCAGCACG 59 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 3 3 3 81 17 47320823 47320841 ACCTGACCCTTTGGAAGAG 59 47320882 47321918 CATATACTCTTGCAAACTGTCCC 60 NA Rattus norvegicus 81 Gcat ENSRNOG00000055408 ENSRNOT00000078383 1 1 1 81 7 120267331 120267349 CTGCTCAATATGGTGCCCT 60 120267394 120267503 TCATCTGTGCCTCTTCCAG 59 NA Rattus norvegicus 81 LOC683581 ENSRNOG00000049827 ENSRNOT00000075529 3 1 1 60 2 165835836 165835854 GGCTTCAACGTGGAAATGG 60 165835878 165835896 CAATATCCCACACCGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calr3 ENSRNOG00000013260 ENSRNOT00000018018 1 1 1 80 16 19097852 19103816 TAAAGAGAAAGACAAAGGCCTG 59 19103857 19103875 TTGCTGAATGGCTTGAAGC 59 NA Rattus norvegicus 81 Cln3 ENSRNOG00000019103 ENSRNOT00000025898 2 1 1 80 1 197997187 197997363 GAGGATTCTGAGAGGGAGGA 60 197997126 197997145 CGCATTCTTCCAAAGGACAC 60 NA Rattus norvegicus 81 RGD1562055 ENSRNOG00000030214 ENSRNOT00000041674 1 1 1 60 10 2075082 2075100 CACAAGTGCATCCATGGAG 59 2075123 2075142 GAATTTCTTTGAGTGCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621,ENSRNOT00000088306 2 2 2 82 12 52069378 52069396 ACCAAAGCCCTAGAGACAC 59 52069215 52069332 CACATAGTGATGCGTGAGC 59 NA Rattus norvegicus 81 Rn60_X_0633.2 ENSRNOG00000051233 ENSRNOT00000076550 3 1 1 60 X 63245686 63245705 TGTACCTGTCTATCCTGGAG 58 63245645 63245663 ATTTGTTTGGTCGTGACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2h ENSRNOG00000039079 ENSRNOT00000019072 1 1 1 80 19 37062677 37062698 ATGTCTGAAGACTGCCTATACC 60 37062739 37063232 CCACACCATCACAGGTAGG 60 NA Rattus norvegicus 81 LOC301124 ENSRNOG00000046002 ENSRNOT00000075344 1 1 1 82 9 10447562 10447580 GGGTCTGGAGATGTCACAG 60 10447780 10448564 AGATGATGCCTGAGTTCCAG 60 NA Rattus norvegicus 81 AABR07001408.1 ENSRNOG00000033265 ENSRNOT00000045014 2 1 1 60 1 42741310 42741330 CAATAGCATTGAATTGGGCAC 59 42741270 42741289 GATAGCCAGGATGCATACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmk ENSRNOG00000010661 ENSRNOT00000014319 1 1 1 87 2 45069371 45070285 ATTCCTGCAAGGGTGACTC 60 45069302 45069322 GAGATGCCACATTTATAGCCC 59 NA Rattus norvegicus 81 Alcam ENSRNOG00000001989 ENSRNOT00000002738 3 1 1 80 11 50961574 50964061 GGATGAAGGATAACATCAGGC 59 50964103 50964121 CACAGACATAGTTCCCAGC 58 NA Rattus norvegicus 81 Aamdc ENSRNOG00000012584 ENSRNOT00000016783 1 1 1 80 1 162527411 162533684 AAACAGGAACTGAGCATTCTC 59 162527351 162527370 TCACAAGAGTCTGTACACCC 59 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 2 2 2 80 10 40563930 40565136 TCATTGTCCAGAGGATCCC 59 40565180 40565198 CTGTGCCAAAGAACAGAGG 59 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 2 2 2 80 15 55067616 55067634 CTGTCTTCCGAGCTTTCCT 59 55067676 55069047 GATCTAGCAATCCTACTGCCT 59 NA Rattus norvegicus 81 Slc25a20 ENSRNOG00000020288 ENSRNOT00000027520 2 1 1 80 8 117471289 117472979 CTCTCATGCGAGATGTTCC 58 117473023 117473041 TTCCCTGTGGAGTGAAGAG 59 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 1 2 2 80 4 79977098 79977117 CTTCGTTTGGAACTCTGAGG 59 79956753 79977057 CCAGATTAACTGTTCTCCCGA 60 NA Rattus norvegicus 81 Dlx4 ENSRNOG00000004399 ENSRNOT00000005807 1 1 1 81 10 82960033 82960051 CAGCATACCCAGTACCTGG 60 82959670 82959990 AGATCTTTACCTGGGTTTGGG 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503,ENSRNOT00000058163 3 2 4 80 5 115215365 115215384 AGTTTCAGGAGATGCTGAGG 60 115210623 115215326 GAAAGATATTGTAGAGCTGGCAC 60 NA Rattus norvegicus 81 LOC102547216 ENSRNOG00000037486 ENSRNOT00000056743 3 1 1 80 6 144072417 144072541 TCAGAAGTACTCTGAGAAGTACTC 59 144072578 144072598 TAGGCAGAGTACTTCTGACAG 59 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435,ENSRNOT00000066430 2 2 2 81 10 15656871 15656891 CGTCATCATCTATCCACTGTG 58 15656933 15657320 AGCTAGTGGAGAGTACAGAC 58 NA Rattus norvegicus 81 RGD1566120 ENSRNOG00000026596 ENSRNOT00000036822 2 1 1 80 10 39739423 39739442 ACAAAGAACACCGAAGACAG 59 39739485 39743059 ATGCTCCCAATCCAAACAG 58 NA Rattus norvegicus 81 RGD1566120 ENSRNOG00000026596 ENSRNOT00000036822 3 1 1 80 10 39739424 39739444 CAAAGAACACCGAAGACAGTG 60 39739485 39743060 GATGCTCCCAATCCAAACAG 59 NA Rattus norvegicus 81 Vom1r41 ENSRNOG00000029852 ENSRNOT00000049350 2 1 1 60 1 67743747 67743771 GTTCTATCTTACTCATTCTCCTCTC 58 67743786 67743807 TTGGATATTTGGAGTAGGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr315 ENSRNOG00000045841 ENSRNOT00000045652 1 1 1 60 1 213452481 213452500 CTGTGTTCTGTGCCTATGTC 59 213452521 213452541 GAAACTTTGCTTCTTTCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf23 ENSRNOG00000024630 ENSRNOT00000074412 2 1 1 80 1 80856576 80856595 GCACGTATCTGTGTATAGCC 58 80852689 80856534 CATTGTCTTGGCTCAAGGAG 59 NA Rattus norvegicus 81 AABR07035357.1 ENSRNOG00000050264 ENSRNOT00000072406 3 1 1 77 12 10973385 10973406 ATCTGTCTTTCATTGTTCACCC 59 10973310 10973347 TTTGAACCTTGGGCAACTC 59 NA DesignRelaxed Rattus norvegicus 81 Olr735 ENSRNOG00000054245 ENSRNOT00000089680 2 1 1 60 3 79009697 79009716 TGTGGTCATTCTGCATTCTC 58 79009656 79009675 AGATAGTGCCCTATACCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Heyl ENSRNOG00000015318 ENSRNOT00000020929 3 1 1 114 5 140930962 140932062 GCGCAGAGGGATCATAGAG 60 140933860 140933879 TTTCTCCAGCTTAGAGGAGC 59 NA Rattus norvegicus 81 LOC679748 ENSRNOG00000034106 ENSRNOT00000047079 1 1 1 72 1 78686713 78686731 CAACTACAGCAAGCTGCTG 60 78686659 78686677 GTTGATGTAGACCCGGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkp3 ENSRNOG00000015152 ENSRNOT00000020864 3 1 1 81 1 213892776 213892795 GGCATCTTTGAGCTGTTGAG 60 213892837 213894871 ACAGGTTCCATAGAATCCCTG 59 NA Rattus norvegicus 81 Mcrs1 ENSRNOG00000054838 ENSRNOT00000082470 2 1 1 80 7 140914393 140914653 AGCAAAGTAGGATCGACCAG 60 140914332 140914350 CAGGTAGAAGGCATCAGGG 60 NA Rattus norvegicus 81 LOC100910235 ENSRNOG00000047720 ENSRNOT00000073468 3 1 1 82 9 4326105 4326123 ACCATGTAAAGGGATGGTG 57 4324681 4326061 TTTAGGGTCCTCTTTCATGTC 57 NA Rattus norvegicus 81 RGD1560695 ENSRNOG00000046438 ENSRNOT00000075402 3 1 1 60 1 18511184 18511203 AAGCTGAAGACCTACTTGAC 57 18511143 18511161 CATGGACACGGAGATTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910646 ENSRNOG00000045695 ENSRNOT00000067009 2 1 1 80 X 74846207 74846226 TTGCTCAGAAGACTACAGCA 59 74844930 74846165 ATCTGAAGACTCTCCAGCTC 59 NA Rattus norvegicus 81 Ccdc58 ENSRNOG00000031653 ENSRNOT00000042208 2 1 1 80 11 67605631 67607743 TATATGAGTCTTTGATGGCAGC 58 67605572 67605591 TTACTACTGCTGAGGTCTGG 59 NA Rattus norvegicus 81 Lrrc55 ENSRNOG00000028266 ENSRNOT00000031745 1 1 1 115 3 72597855 72601810 TACAGCGGATTCTCAGCTG 60 72597758 72597776 CATCCAGGGTCAGAGTCAG 59 NA Rattus norvegicus 81 Mageb5 ENSRNOG00000003110 ENSRNOT00000004145 3 1 1 81 X 60850238 60852487 TCTACTGAAGACTATACTCCTACC 58 60850180 60850198 ATTCTTCAAGCGTTTGCGA 59 NA InUTR Rattus norvegicus 81 Gltscr1 ENSRNOG00000011262 ENSRNOT00000015059 2 1 1 80 1 77872692 77872711 CCGAATGTTCATTCAGGAGG 59 77870904 77872653 GACACATACTCATCAGGTTTCTC 59 NA Rattus norvegicus 81 Gltscr1 ENSRNOG00000011262 ENSRNOT00000015059 3 1 1 80 1 77872685 77872705 GTTCATTCAGGAGGAGAAGAC 58 77870898 77872646 GAGGAAGACACATACTCATCAG 58 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138,ENSRNOT00000066384,ENSRNOT00000067546 2 3 3 80 2 41462214 41462233 TTGAAACGAAGAAGGTGACG 59 41462275 41462989 CCATATTCTGGAGGACCTGG 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138,ENSRNOT00000066384,ENSRNOT00000067546 3 3 3 80 2 41462215 41462233 TGAAACGAAGAAGGTGACG 58 41462276 41462990 ACCATATTCTGGAGGACCTG 59 NA Rattus norvegicus 81 Megf10 ENSRNOG00000013674 ENSRNOT00000037901 2 1 1 80 18 52361554 52362595 CTATGAAGTCGAACCTACAGTC 58 52362636 52362654 AGGTCATATGGGTCTTGGG 59 NA Rattus norvegicus 81 Foxn4 ENSRNOG00000000691 ENSRNOT00000065060 1 1 1 80 12 48118614 48118632 AACATCAGCACTGACACGA 60 48118675 48119678 CCACAGGTTACCCTGTAGAG 59 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000014502,ENSRNOT00000082191 1 2 2 80 15 57259391 57259895 TTTGTACAGCGACTTATCCGA 60 57259936 57259955 ACTCTGTTCCAGTCAACAGG 60 NA Rattus norvegicus 81 Tmem185a ENSRNOG00000011047 ENSRNOT00000066919 1 1 1 80 8 69586407 69593031 TTCAACCCGAGTAAATTCCTC 58 69586347 69586365 AATGATGCCATCCAAACGA 58 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000068093 1 1 3 80 4 118479251 118479269 GAAAGAAGGTAGACGGCTC 58 118478484 118479208 TTCGATTCATGTACTGCCTG 58 NA Rattus norvegicus 81 Cep120 ENSRNOG00000017035 ENSRNOT00000023236 3 1 1 80 18 48693507 48693528 TCTTACACAATGACTCTGGAGG 60 48693365 48693466 AGACATGCCCTGAGATGAC 59 NA Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000082899 3 1 2 92 X 156891021 156891039 CATGCTCCTGGTGTCTACC 60 156890595 156890614 TCATCCAGTAGTTCCTCCTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263,ENSRNOT00000004350 2 2 2 83 13 99143919 99145150 TCCTCAAAGGTATGCAGGC 60 99145197 99145215 TCTTTGACCTGTTAGGCCG 60 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 3 2 2 85 16 19663400 19667057 AAAGTACAAGGAGGAAGAGTGG 60 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Mtmr12 ENSRNOG00000022929 ENSRNOT00000036633 1 1 1 80 2 62299431 62300322 GATACTAACATGGGCAGGG 57 62300366 62300384 CTGTACTGACCAATCCCAC 58 NA Rattus norvegicus 81 Olr289 ENSRNOG00000031903 ENSRNOT00000046290 2 1 1 60 1 212836433 212836451 CCCAAGTCTTCACATTCCC 58 212836475 212836493 GACAATGTCCAACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ing4 ENSRNOG00000023363 ENSRNOT00000024116 3 1 1 80 4 157558162 157558181 AAACCTCCCGTTTGAATTGC 60 157558223 157560990 ATTTCAGCCTTCAGGTCCTC 60 NA Rattus norvegicus 81 LOC100912067 ENSRNOG00000047723 ENSRNOT00000073027 3 1 1 60 8 41247903 41247921 ATGTTGCCATCTGTCAACC 59 41247945 41247963 AGGGAACATGTCACAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra2c ENSRNOG00000009299 ENSRNOT00000012322 3 1 1 60 14 80730650 80730669 TTCTTCTGGATCGGCTACTG 59 80730609 80730632 GATTGAAGACAGTATAGATGACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 1 2 2 80 6 27487274 27487294 GCCATGGGATGACATTAGC 59 27485776 27485794 TCATACCAGGCCTCAACTC 59 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 2 2 2 80 6 27491772 27491794 GTCATAAGCATGTACCTGATTGG 60 27487518 27491737 CATCTACTCCATCTAGAGTGTAGG 59 NA Rattus norvegicus 81 Eme1 ENSRNOG00000024420 ENSRNOT00000032693 1 1 1 80 10 82370310 82370328 TGGAAGAGCCAACAATCCT 59 82370169 82370267 CAGGATTTCCCTGCTTTGAG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 2 3 5 69 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762935 120762953 AGTAGTCCGGTATCGTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nagpa ENSRNOG00000002895 ENSRNOT00000003888 2 1 1 80 10 10575411 10575429 CTCATCCGTAATGGAAGCA 57 10575473 10576830 GCTGAAAGAACCTGTCTCC 58 NA Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 3 2 2 82 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958187 26958205 TTCATTGATCTTCACGCCC 58 NA Rattus norvegicus 81 LOC681325 ENSRNOG00000023005 ENSRNOT00000030692 1 1 1 95 X 80359620 80359641 GACCAAATCCTTAGGTATCCTG 58 80360594 80360612 TAGGAAGGCTTCTCCAAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07051793.1 ENSRNOG00000039141 ENSRNOT00000030332 1 1 1 89 3 21556838 21586080 AAACCAATTGTACTGCCGC 60 21586131 21586151 CTGTTCTCATTCTGTGCTCTC 59 NA Rattus norvegicus 81 Olr1219 ENSRNOG00000046384 ENSRNOT00000074713 3 1 1 60 8 42260742 42260760 ATGTTGCCATCTGTCAACC 59 42260784 42260802 AGGGAACATGTCACAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fxyd7 ENSRNOG00000021067 ENSRNOT00000028603 2 1 1 94 1 89477255 89477274 CACTATCATGTTCGTGCTGG 59 89476835 89476951 ATTTGCATGTTGGGCTCTC 59 NA Rattus norvegicus 81 Lnx2 ENSRNOG00000000955 ENSRNOT00000001263 3 1 1 80 12 9790107 9791062 GACGGAAGATTAAAGTGTGGAG 59 9791103 9791121 GACCAGAGCAGAGTGACTC 60 NA Rattus norvegicus 81 LOC100910041 ENSRNOG00000046311 ENSRNOT00000073833 3 1 1 60 8 42885748 42885768 TGTACTTCTTCCTCAGCAGTC 60 42885785 42885808 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0657.1 ENSRNOG00000023194 ENSRNOT00000046071 3 1 1 60 6 56069988 56070006 CACTAACCATGAGCCTCAG 58 56069946 56069964 AGAGTAAGGTCCACGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r34 ENSRNOG00000049710 ENSRNOT00000064246 1 1 1 60 1 71955320 71955338 CTTGTGTTCCACCTGTGTC 59 71955278 71955299 TCTATGAATAGGAGCAAGAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifb2 ENSRNOG00000012197 ENSRNOT00000016431 2 1 1 80 3 149374548 149374895 TCACCTCAATGCTCTCCTG 59 149374939 149374957 ACCAAGACCTCAGAGTGGA 60 NA Rattus norvegicus 81 Osbpl3 ENSRNOG00000010011 ENSRNOT00000013828 1 1 1 80 4 80089018 80089845 AGAGCCAAACTGATATTGAGAG 58 80088959 80088980 ATGACTTCTTCACAGACATCAC 59 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 3 2 3 80 13 50485664 50488199 GTTTGCAGGTGTGAATGAG 57 50485602 50485621 TCCAGATAATAGCGTAGCCA 58 NA Rattus norvegicus 81 Fam101b ENSRNOG00000006674 ENSRNOT00000008982 2 1 1 115 10 64197031 64199660 GGAAATAAAGTATACCTCCTCAGTC 59 64196940 64196959 GGATACAGGTGACTGTCTGG 60 NA Rattus norvegicus 81 Cdk14 ENSRNOG00000007151 ENSRNOT00000009417 2 1 1 80 4 26277478 26277497 TTCTTGGAACACCAAACGAG 59 26277538 26304358 TGTACACGGTAAATCGTTCTG 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 3 2 2 84 20 5804101 5804119 CCAACATGACACCATCCTG 59 5803656 5804053 CCCATAGAGGGTCTTTGGG 59 NA Rattus norvegicus 81 Ccdc114 ENSRNOG00000021109 ENSRNOT00000028662 1 1 1 80 1 101926417 101926809 AAATACCTGGAGTTGGAGGA 58 101926849 101926870 CTGAAGATGGTATAGTTCCGAG 58 NA Rattus norvegicus 81 Ccdc114 ENSRNOG00000021109 ENSRNOT00000028662 2 1 1 80 1 101932066 101932165 AAGTCATGAAGTTGGTGCAG 59 101932207 101932226 TGGAAAGAGTCAAACTTGGG 58 NA Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000033661 3 1 2 84 1 88353116 88356856 TATCTCACTGGATCTGGAGTC 58 88353052 88353074 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Olr1469 ENSRNOG00000047958 ENSRNOT00000072702 3 1 1 60 10 62361751 62361770 ACTTGTCCTTCTCTGACCTC 59 62361710 62361729 ATGTTCTGCAACAACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000064776,ENSRNOT00000089894 2 2 2 80 10 104145725 104145747 CAGGAGACTTCATAATGAAGTGG 59 104144843 104145687 TCTCCCAAGTACTTTGGAGAG 59 NA Rattus norvegicus 81 Lbx1 ENSRNOG00000025520 ENSRNOT00000021748 3 1 1 74 1 264974838 264974856 GCCAGCAAGACCTTTAAGG 59 264974128 264974146 AAAGATGGTCATCCCATCG 57 NA DesignNoJunction Rattus norvegicus 81 Btrc ENSRNOG00000016280 ENSRNOT00000022426 3 1 1 80 1 265188904 265202876 TTAGACAGACTTACAACAGCTG 58 265202917 265202935 CAGTCTTCATAGCAGTGCT 57 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000077066,ENSRNOT00000076242 3 2 3 92 13 50564113 50564131 TTGAAATCTCCTGTGCCCT 59 50559142 50559160 GTAGCTTCACAGCATTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000084451,ENSRNOT00000091794 3 2 3 60 14 60057973 60057991 AACTCTCATGCTGCTAGCC 60 60057931 60057949 GGAAGCACTGTCTTTGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb10 ENSRNOG00000029244 ENSRNOT00000040125 3 1 1 83 18 30489865 30489883 GATGTTAGCGGAACTGGGA 60 30489929 30491595 GTGAAGAGAAGCAGTTCCAG 59 NA Rattus norvegicus 81 LOC685217 ENSRNOG00000003548 ENSRNOT00000062053 3 1 1 100 4 5997003 5997024 GGCATCTCTATCAAGTTACAGG 59 5995914 5995936 GGGCTGAGGAACATAATTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC681195 ENSRNOG00000031560 ENSRNOT00000048373 1 1 1 60 10 72556261 72556280 CATCAAGCACTCAAAGAGCA 59 72556220 72556240 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crbn ENSRNOG00000006534 ENSRNOT00000008873 1 1 1 80 4 138881227 138881246 AAGAAGTCAGTATGGTTCGG 57 138880509 138881185 CCCTTTCTTGCACATTACTG 57 NA Rattus norvegicus 81 Ndfip1 ENSRNOG00000013562 ENSRNOT00000018499 3 1 1 92 18 31605824 31605845 TATAATGTGGCTACAACACTGC 59 31605895 31609909 ATCTTCATCTCTTCCAGGAACC 60 NA Rattus norvegicus 81 Mat2b ENSRNOG00000003177 ENSRNOT00000082076,ENSRNOT00000004269 2 2 2 80 10 25832966 25833418 AGCCACTTACGACCTATTACTG 60 25832907 25832927 CAATTTGGAGCAATCAAGCTG 59 NA Rattus norvegicus 81 Olr1275 ENSRNOG00000047973 ENSRNOT00000073449 1 1 1 60 8 42979157 42979175 GCACGATCATCCTGATCCT 59 42979115 42979134 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fsd1 ENSRNOG00000050318 ENSRNOT00000072830 3 1 1 80 9 11079070 11079090 CCATGAAGAATGAGGAGACAC 59 11078730 11079028 CTTTGGCTGAGTTTGCCTC 60 NA Rattus norvegicus 81 Colgalt1 ENSRNOG00000023317 ENSRNOT00000024866 3 1 1 80 16 20047076 20047854 AGGTCATGGTGAAGCATCC 60 20047898 20047916 CAAAGCCCATCTTGTCTGC 60 NA Rattus norvegicus 81 Olr244 ENSRNOG00000045879 ENSRNOT00000055175 3 1 1 60 1 172214930 172214948 TTATGTGATGCCCAAGTCC 58 172214888 172214907 GTAGAACACAGACACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs3 ENSRNOG00000009155 ENSRNOT00000012425 1 1 1 80 3 79724150 79724299 GGTATGAGAGGGAGGTCTG 58 79724088 79724110 CATAATCTGTCAGGATCCTTCTC 58 NA Rattus norvegicus 81 LOC688282 ENSRNOG00000045889 ENSRNOT00000074899 1 1 1 80 10 106800187 106803759 CAGACAGAAGGCATCACCA 60 106803799 106803821 GATGTCACAGGTTATAAGCACTC 59 NA Rattus norvegicus 81 Hepacam2 ENSRNOG00000009711 ENSRNOT00000012995 2 1 1 80 4 28426193 28430175 GTCACTGTTGATGATCCTGTC 59 28426133 28426151 AATGTTGCCCACATACTCC 58 NA Rattus norvegicus 81 Smarcb1 ENSRNOG00000028302 ENSRNOT00000029458 1 1 1 80 20 13684957 13686567 GTCACATGACCATGGATACAC 59 13686609 13686627 CCGTCCAGAATCTCTTCCA 59 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000045691 3 1 5 101 2 192539014 192554053 CAAATTTGTGCTGTTGCCC 59 192554118 192554136 CTGGACAGTTTGGAGGAGG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085931 3 1 5 87 2 192539036 192566885 TGTGCCATAGTGTCCTGAG 59 192566936 192566954 CTTCTGCTGACATGGTGGA 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000012067 1 1 5 138 2 192565926 192565944 TACCAAGAACAGCAGTGCA 60 192566787 192566805 GAGGAGGACAAGACTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Sez6 ENSRNOG00000009350 ENSRNOT00000048543 3 1 1 80 10 64869461 64870082 ATCCACTTCTTTGAGGTGC 58 64869399 64869417 CTGTGATGGGTTCTTCCAG 58 NA Rattus norvegicus 81 Rn60_5_0814.31 ENSRNOG00000051026 ENSRNOT00000075915 2 1 1 89 5 77336882 77336905 GAGCAATGTTCTATAGGAAAGGTG 60 77332300 77336834 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 AC142181.1 ENSRNOG00000033815 ENSRNOT00000051964 3 1 1 80 4 70820533 70820551 AACTGGTCAGAGGACTCAC 59 70820594 70821048 GGTAATCCCACAATCTGCTC 59 NA Rattus norvegicus 81 Lvrn ENSRNOG00000003950 ENSRNOT00000039733 2 1 1 80 18 40900008 40900029 ATGCCAACATACTTAGTTGCAC 60 40900070 40906369 GACACGTATCTCCTTGCCT 59 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000088919,ENSRNOT00000043448 1 2 2 80 10 64991794 64991812 CAAGGAGGAGATGAGCGAG 60 64991381 64991751 CTCTCCAAGTCCATCTCCAG 59 NA Rattus norvegicus 81 Psmd12 ENSRNOG00000003117 ENSRNOT00000004283 1 1 1 80 10 95721604 95723362 GTCGTGGAGCATAACATCAG 59 95723405 95723423 GAGATCCAGAAGTTGTGCC 58 NA Rattus norvegicus 81 RGD1560821 ENSRNOG00000023733 ENSRNOT00000034329 2 1 1 89 X 77885618 77885636 CAAGATCTACCCGGGACAC 60 77885796 77885815 AATGCGGACTCACATTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Irf7 ENSRNOG00000017414 ENSRNOT00000023504 1 1 1 89 1 214251498 214251517 GGAGCTTGGATCTACAACTG 58 214251019 214251107 CCTAGGGACATACCCTGTG 59 NA Rattus norvegicus 81 Cybrd1 ENSRNOG00000009620 ENSRNOT00000012942 1 1 1 82 3 57730338 57742005 CATCCAACAGCTTGTTGTAGG 60 57742049 57742067 GTATGGGCATGACGATTGC 60 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332,ENSRNOT00000001333 3 2 2 81 12 2235558 2239000 CTGATGTCAAAGGGAACGG 59 2235495 2235514 CCTCACCGAAATAGTAGCAC 58 NA Rattus norvegicus 81 Spatc1l ENSRNOG00000001262 ENSRNOT00000001704 1 1 1 80 20 13169953 13169972 CTAAGAAGGTGTGCTTCTCG 58 13165686 13169915 TCTGGATCTCATTGAGGTAATAGG 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 1 2 2 80 6 36949335 36951673 ATAATGGAAGTGGGAAGAGTG 58 36951713 36951733 ATCCTCTGTTAGTAGCAACTG 57 NA Rattus norvegicus 81 Ppt1 ENSRNOG00000012616 ENSRNOT00000017998 1 1 1 80 5 140545719 140548448 CAACATCAAGGTGTCTTTGGA 59 140548485 140548508 GTTAAGTGACTTCCTGATGAAGTC 60 NA Rattus norvegicus 81 Plekhg2 ENSRNOG00000030266 ENSRNOT00000044326 2 1 1 85 1 85394806 85394824 CCAAGACTTTCTGGCAGTC 59 85394952 85395125 TGAGGCTTATCGTTCTGGG 59 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130,ENSRNOT00000082239 2 2 2 80 5 101587974 101587992 CGCGATTTCAAACCTGGAG 60 101584485 101587932 AGGAACTTCATCTACTCGAGC 59 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 3 2 2 80 2 237755876 237770215 TTTCTAGAGGAAAGCATGAGAG 58 237770256 237770274 TCCTTTCCCGTAGAAGGTC 58 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773,ENSRNOT00000089005 2 3 3 80 20 13967696 13968198 CTATGAGGAGACAGGGACG 59 13968241 13968260 GGGATGTTTGTAGCCAAAGG 59 NA Rattus norvegicus 81 Greb1 ENSRNOG00000024651 ENSRNOT00000032417 3 1 1 80 6 41945794 41945813 CACTTTGTCTTCAGCCAACC 60 41943884 41945755 GATGTGCTCATAACTCTTGTCTG 60 NA Rattus norvegicus 81 B3gnt3 ENSRNOG00000018764 ENSRNOT00000025363 2 1 1 109 16 20125453 20125618 TGACACTTAAGCAGGTCCT 58 20125362 20125380 GACCATGTTGTCCGTATGG 58 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000048168 ENSRNOT00000063905 3 1 1 127 12 52638247 52638612 GACCTGACAGAGAAGATCAGG 60 52638786 52638804 GTGAATCTGTCGAACACGC 60 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 3 2 2 81 4 133318862 133318880 AAATGGTTTGCCTGAGAGC 59 133318924 133319616 TGCTGAAGAATCACTGTGTC 58 NA Rattus norvegicus 81 Parva ENSRNOG00000015713 ENSRNOT00000021671 2 1 1 80 1 177393304 177393809 CAATGTGGTGAAGAAGACCC 59 177393851 177393870 GTCTCCAGTTCTGTGACCTC 60 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433,ENSRNOT00000071977 3 2 2 80 6 42602743 42602761 AAGCTATGTACAGTGGCAG 57 42592608 42602699 TCCTCAGCGATCAATTTGG 58 NA Rattus norvegicus 81 Cyp2c12 ENSRNOG00000047945 ENSRNOT00000015801 2 1 1 80 1 258731877 258731896 GAGACATCAAGCTTAACGCT 58 258725478 258731837 CTCTTCCTGGACTTTATCTGTG 58 NA Rattus norvegicus 81 Bin2a ENSRNOG00000032461 ENSRNOT00000037757 1 1 1 80 8 27972290 27972309 CTGAATGCATCCTGTGTCTG 59 27971699 27972250 ATTGATTAAGCCTGGGTAACTG 59 NA Rattus norvegicus 81 Zswim4 ENSRNOG00000007582 ENSRNOT00000010050 1 1 1 84 19 25327763 25329273 GCTGCCAAAGGAGATACCA 60 25327697 25327715 ACTTGAAGAGCAGAGCTGG 60 NA Rattus norvegicus 81 Chrna2 ENSRNOG00000017424 ENSRNOT00000023475 3 1 1 80 15 42823807 42824970 CTGACTCTTCGGTGAAGGA 59 42825013 42825032 AGACGATAATGAACAGCCAG 58 NA Rattus norvegicus 81 Cryga ENSRNOG00000014790 ENSRNOT00000019963 1 1 1 80 9 71830413 71830431 ACTACCCTGACTACCAGCA 60 71828628 71830370 TGTGAGAGCTGGTATAGGGA 60 NA Rattus norvegicus 81 Dnajb6 ENSRNOG00000010353 ENSRNOT00000035996 3 1 1 98 4 2724663 2724684 AGGCATATGAAGTGTTATCGGA 60 2726083 2727197 AATGACTTCCACCTCCTCC 59 NA Rattus norvegicus 81 Flrt3 ENSRNOG00000004874 ENSRNOT00000006454 3 1 1 84 3 134685277 134685296 GAGAGCAAGAGAAAGAACCT 57 134684605 134685231 AACTTCAATATCAGGGCCAC 58 NA Rattus norvegicus 81 Gipc3 ENSRNOG00000020593 ENSRNOT00000027951 1 1 1 80 7 11246056 11247213 CTACTGAGATCCTATTCTGCAC 58 11247254 11247272 CTTCTAGCCCAATCTGTCC 57 NA Rattus norvegicus 81 Dhh ENSRNOG00000053675 ENSRNOT00000087327 3 1 1 103 7 140577249 140577267 AAGTATGGTTTGTTGGCGC 60 140576897 140577185 AATGAGTTATCAGCTTTGACCG 59 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 1 2 2 80 X 78773177 78773197 CTGGATGCGTCAAATCATCTC 60 78773239 78774491 TGCAGAATGATATGGCCCT 59 NA Rattus norvegicus 81 Wfdc9 ENSRNOG00000031380 ENSRNOT00000043716 1 1 1 88 3 161115293 161115312 TGAAGTTCTGGATCCTCCTC 59 161113198 161115242 TTCAGGCTTCTCCTTGAGG 59 NA Rattus norvegicus 81 Wfdc9 ENSRNOG00000031380 ENSRNOT00000043716 2 1 1 89 3 161115294 161115312 TGAAGTTCTGGATCCTCCT 57 161113197 161115241 CTTCAGGCTTCTCCTTGAG 58 NA Rattus norvegicus 81 Ppapdc2 ENSRNOG00000015268 ENSRNOT00000020475 1 1 1 60 1 247084681 247084700 CTGGAGATCTCAGGACATGG 59 247084723 247084741 TCCTAAGCAGGCAGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptp4a3 ENSRNOG00000007628 ENSRNOT00000010224 2 1 1 86 7 115001764 115002474 CAGTTCATCCGACAGAAGC 59 115002524 115002542 TCTCAGTCTCTGCTTAGGC 59 NA Rattus norvegicus 81 Rn60_2_1089.2 ENSRNOG00000047587 ENSRNOT00000074664 3 1 1 60 2 89035921 89035940 AGATGAGACCACCCATAGGA 60 89035880 89035898 AGTCTCATCATTGGAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il12rb1 ENSRNOG00000019216 ENSRNOT00000025977 1 1 1 80 16 20377470 20377927 ACTATGGAAGGGCAGACAC 59 20377408 20377426 CAAGTGCTTCTTCACCTGC 60 NA Rattus norvegicus 81 Tnfsf11 ENSRNOG00000049547 ENSRNOT00000049056 3 1 1 83 15 60504158 60504177 ACACAGAAGCACTACCTGAC 60 60488542 60504115 CCACAATGTGTTGTAATTCCCT 59 NA Rattus norvegicus 81 Aldh16a1 ENSRNOG00000020623 ENSRNOT00000027992 1 1 1 80 1 101140683 101140701 AAGTGGAGCTGAGTGTGAG 59 101139633 101140642 ATCCTGTTACCTGTAGTGTCTG 59 NA Rattus norvegicus 81 Lmln ENSRNOG00000001781 ENSRNOT00000002427 1 1 1 80 11 70956527 70961077 GGACACTGAGGTCATAAATAAGG 59 70956469 70956489 TTGATTCGTAAATGCCCATCC 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607,ENSRNOT00000085265,ENSRNOT00000067162 2 3 3 81 14 86228174 86228314 GCCTATGACTTCCCATCCC 60 86228111 86228130 GGTTGATGGTCAACATCTGG 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000081607,ENSRNOT00000085265,ENSRNOT00000067162 3 3 3 81 14 86228972 86229063 AGGCATGGTTTGGATTTGC 59 86228909 86228927 TCCACTGGTTTGCCATAGG 60 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438,ENSRNOT00000005731 3 2 2 80 6 36096124 36098928 CGTCAATCACTATGGTCTACTG 59 36098967 36098987 AGATATGCCTTCAAGTAGCCA 59 NA Rattus norvegicus 81 Cracr2b ENSRNOG00000019199 ENSRNOT00000025964 2 1 1 87 1 214445199 214445217 AGATGTGGTTGCTGTCTCC 60 214445268 214445497 CCTCAGATTCAGCTCCCTC 59 NA Rattus norvegicus 81 Bsph2 ENSRNOG00000046669 ENSRNOT00000071105 2 1 1 81 1 75847750 75849603 GACTGAATGCAGAATTGATCTC 58 75842519 75842540 TAGACAAATGGAAAGACACAGG 58 NA Rattus norvegicus 81 Gata4 ENSRNOG00000010708 ENSRNOT00000014320 2 1 1 94 15 46388301 46389263 CCATGTCCCAGACATTCAG 58 46388225 46388243 AGATGGATAGCCTTGTGGG 59 NA Rattus norvegicus 81 Rn60_X_0654.1 ENSRNOG00000051187 ENSRNOT00000076870 2 1 1 60 X 64487262 64487282 AGTGAAGCCTATCTGGTTGAC 60 64487222 64487242 AATGTTTGGCATGGATAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.20 ENSRNOG00000051058 ENSRNOT00000076634 1 1 1 60 5 77733418 77733438 TATTCATCAGAGATCCCACAC 57 77733378 77733397 GGCTTTACCACATTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000063994,ENSRNOT00000080811 1 2 2 80 4 8141891 8143149 GGATATGCAAGGGAAGAGG 57 8143192 8143211 ATTTCATCCAAGGCTGTCTC 58 NA Rattus norvegicus 81 AABR07073045.1 ENSRNOG00000060344 ENSRNOT00000072795 3 1 1 60 4 120413869 120413893 CCCAACTATAAGCTTATTACTCCAG 59 120413833 120413853 AGGAACCTCGAATCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360244 ENSRNOG00000029808 ENSRNOT00000045115 1 1 1 147 15 61873263 61873282 AACGACAAATAGCAAAGGTG 57 61872670 61872688 TTCTCCACGGATAGTCGAG 58 NA DesignNoJunction Rattus norvegicus 81 Sdhc ENSRNOG00000003163 ENSRNOT00000004228 3 1 1 80 13 89513059 89514452 CTCTGTATCAGAAATGCTGCT 58 89512999 89513020 GGAACTCGTGTTCTTATTCCAG 59 NA Rattus norvegicus 81 Iglon5 ENSRNOG00000017918 ENSRNOT00000024150 3 1 1 80 1 98450018 98450036 AGAGTCTGGAGTTCAGCTC 58 98450079 98450920 CATCAATGAAGCAGCTGAGG 59 NA Rattus norvegicus 81 Lrrc29 ENSRNOG00000025231 ENSRNOT00000059663 3 1 1 80 19 37268375 37269524 CTCTTCACTGAAGGATGCCT 60 37268314 37268333 CAGGAGGACAAGTCTAGCAC 60 NA Rattus norvegicus 81 Olr1122 ENSRNOG00000006439 ENSRNOT00000008423 2 1 1 60 8 18762848 18762868 GATGATAAAGCACTGAAGCCA 59 18762808 18762828 TGGTTAACAAGTACATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1874 ENSRNOG00000046620 ENSRNOT00000028572 1 1 1 60 1 228262347 228262367 GTTTACACCTTCATCACTCCT 58 228262307 228262326 GTTCTCTGTTCCTCATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agmat ENSRNOG00000012315 ENSRNOT00000016648 1 1 1 80 5 160318244 160318262 TAGATGCCTTGGATCCTGC 59 160318306 160320146 TCTCCAGAGCCTGACTAGG 60 NA Rattus norvegicus 81 Agmat ENSRNOG00000012315 ENSRNOT00000016648 2 1 1 81 5 160318243 160318262 ATAGATGCCTTGGATCCTGC 60 160318306 160320146 TCTCCAGAGCCTGACTAGG 60 NA Rattus norvegicus 81 Bet1 ENSRNOG00000011008 ENSRNOT00000014810 2 1 1 101 4 29083477 29085097 CTGTTAGCTGAAATGGATTCAC 58 29083397 29083415 CAATTTCGTTTGGCTCCCT 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 3 2 4 175 15 36823466 36824068 AAGTCGTTGAGGTCTCTGC 60 36825286 36825305 GTGTGCTGCTATCACAAAGG 60 NA Rattus norvegicus 81 Pla2g2d ENSRNOG00000016826 ENSRNOT00000022579 2 1 1 85 5 157222686 157225545 CTGCTGGCTGGTATAACTG 58 157225594 157225612 AAGAAGGCTTTCTTCCCAG 57 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428,ENSRNOT00000088928 3 2 2 80 15 51245979 51245998 ACTATTGCACCGAAGATGTC 58 51246041 51247582 CACAGTAATCCTTGGCAGC 59 NA Rattus norvegicus 81 Cacng5 ENSRNOG00000003288 ENSRNOT00000004578 1 1 1 80 10 96125609 96129095 TTTATCCTATCCGGCCTCTC 59 96125548 96125566 GGTTCTGTTGAGCATCTCG 59 NA Rattus norvegicus 81 Rasl12 ENSRNOG00000032339 ENSRNOT00000046914 1 1 1 84 8 70918532 70925377 GAATATGATCCCAATTTGGAGGAC 60 70925420 70925438 CAGTGTCCATGACCCTCAG 60 NA Rattus norvegicus 81 Hoxb2 ENSRNOG00000008365 ENSRNOT00000011213 2 1 1 84 10 84201257 84202016 ATCACCATCAGATGGTCCC 59 84202063 84202082 CAGTTGCGTGTTGGTATAGG 59 NA Rattus norvegicus 81 Icmt ENSRNOG00000010953 ENSRNOT00000014625 3 1 1 84 5 169477782 169477800 AGTCTGGAGTACACAGTGG 58 169477847 169478539 TAATCTGCTTCAGTTCTGGC 58 NA Rattus norvegicus 81 RGD1564730 ENSRNOG00000030045 ENSRNOT00000047012 3 1 1 60 9 99365009 99365027 GAGTTGCTCAAAGTGTCCA 58 99364967 99364986 CACCCATACTCATCTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il5ra ENSRNOG00000005954 ENSRNOT00000008403 1 1 1 80 4 138826724 138826743 GACCATTCTGAAGAGCATCC 59 138824626 138826681 CCAGAAGATCCTGGTGGAG 59 NA Rattus norvegicus 81 Commd10 ENSRNOG00000003958 ENSRNOT00000005260 1 1 1 80 18 41030865 41030883 AATGCCTGGTCGACTATGG 60 41030925 41052447 CACTGTCTCTAGCTTGAGAGG 60 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076539,ENSRNOT00000076320,ENSRNOT00000076016 2 4 5 60 13 77945176 77945194 GGCTGGTGATGAAATTGCT 59 77945214 77945236 CCGATTTCTGATTCTAACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lect1 ENSRNOG00000012821 ENSRNOT00000017400 2 1 1 80 15 61923782 61927659 ACAATCCTTACCACCAGCA 59 61923720 61923742 ACTCTATACAGCAGATTCCTTCG 60 NA Rattus norvegicus 81 Rpl4 ENSRNOG00000009378 ENSRNOT00000013461 3 1 1 80 8 69126227 69126247 GATCATGTTGAAGCTGAACCC 60 69126287 69126518 CGAAGTTTGTGATTCCTAGCC 59 NA Rattus norvegicus 81 LOC499235 ENSRNOG00000031368 ENSRNOT00000045415 1 1 1 82 1 171997319 171997341 CCACCAGAAATATACAGTGACAC 59 171996574 171997277 TCTTTATCCCTGTTCCGGC 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000,ENSRNOT00000009073,ENSRNOT00000008760 3 3 3 80 3 92698032 92705992 ACAGTAGGAGAAGGTGTGG 58 92697970 92697989 CACTTGGTTTCCTGTCTTCC 59 NA Rattus norvegicus 81 Trh ENSRNOG00000011824 ENSRNOT00000015944 3 1 1 95 4 124112318 124112336 CCTGGAGAATGTTCAGGTC 58 124111754 124112259 ATCCAGGAGTCTAAGGCAG 58 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 1 1 1 64 15 82081335 82081353 ATGAACAAGCCAGTGAGGA 59 82081288 82081307 AAATGGTTGGCAGAGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Pik3cg ENSRNOG00000009385 ENSRNOT00000012487 2 1 1 80 6 51469350 51483827 CTTCCAGAAATTCCAGGATGTC 59 51469291 51469310 GAGAACAGGATGATCAGCAG 58 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000072149 3 1 2 87 1 80218448 80218911 CCGAGAAGAAACACTTACCC 58 80218380 80218399 GTTTCTGCATTTAGCTGCAG 58 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000091687 1 1 2 85 1 80218957 80218975 CAACTAGCACAAGCACCAG 59 80217054 80218910 ATCCGTTTCTGTTTCTTCTCG 59 NA Rattus norvegicus 81 Fam208a ENSRNOG00000014750 ENSRNOT00000074069 3 1 1 80 16 3062268 3063305 TGATCGGTACCAGGTTCAG 59 3063349 3063367 GAAGGACTGCCAAGAACTG 59 NA Rattus norvegicus 81 Apoh ENSRNOG00000003566 ENSRNOT00000004756 3 1 1 80 10 96649570 96652441 CTGTAAAGCATCTTGCAAACTC 59 96652481 96652500 AACTGGTCCTGGATCTTCAC 60 NA Rattus norvegicus 81 AABR07066754.1 ENSRNOG00000042468 ENSRNOT00000066779 3 1 1 81 9 14864587 14864608 TGCACTTCTCATCAAGAATGTG 59 14864648 14864671 GTGTAGCTTCAAGATCTGTCC 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227,ENSRNOT00000080365 2 2 2 80 18 57148308 57148327 TTTCCTACGAGCCTCATTCC 60 57146556 57148268 ATAATGTTCCCAGTGACTCTCC 60 NA Rattus norvegicus 81 Arfgap2 ENSRNOG00000014429 ENSRNOT00000057161 1 1 1 80 3 80090423 80090443 GGTATGGACAGGGTAGAAGAG 59 80090484 80091420 CCGACTTGTGGTTCTTTCTG 59 NA Rattus norvegicus 81 Olr399 ENSRNOG00000049538 ENSRNOT00000075496 2 1 1 60 3 15823988 15824007 GGGCTATACCTAGTTCCCTC 59 15824028 15824048 TCACAGACACAATGACATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr247 ENSRNOG00000048525 ENSRNOT00000049260 3 1 1 60 1 172283437 172283458 CATGTACTTCTTTCTCAGCCAC 59 172283476 172283497 TGTAACAGATGATGAGTAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000061954 3 1 2 80 1 4538519 4540464 AGTCATCCCTCTTCATCCA 57 4538457 4538476 TCTGTGAGCTTAAACTCAGG 57 NA Rattus norvegicus 81 Fam204a ENSRNOG00000009830 ENSRNOT00000013031 3 1 1 87 1 281370484 281370685 AAAGGAGTCTTCCAGCGAG 59 281370415 281370437 GGGTTCAAATCTATCATTGGCTC 60 NA Rattus norvegicus 81 Zfp37 ENSRNOG00000046629 ENSRNOT00000018209 1 1 1 85 5 77293980 77294661 CTCGATGGGAAATCAAGATCC 59 77293915 77293934 TATTCGCCCTCACTGAAGAC 60 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600,ENSRNOT00000064942 1 2 2 80 15 85975358 85981448 AGAATCGAAGGTCTCTACCC 58 85975297 85975315 AGCTTGCTCATTATCCGTC 58 NA Rattus norvegicus 81 Csap1 ENSRNOG00000049151 ENSRNOT00000075648 2 1 1 60 10 13230190 13230210 GCTTAAGTTTGGCAACAACTG 59 13230232 13230250 TTCAATCTCAGCCCTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910010 ENSRNOG00000048560 ENSRNOT00000075191 3 1 1 60 2 115188693 115188713 TGTACTTCTTCCTCAGCAGTC 60 115188730 115188753 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000006519,ENSRNOT00000080714 3 2 2 80 10 104388132 104389767 CTGTCAAACTATATGGTGCCC 59 104389809 104389827 GGAAGTGGATCTGCAACAC 59 NA Rattus norvegicus 81 Rn60_5_0814.18 ENSRNOG00000051035 ENSRNOT00000076876 1 1 1 60 5 77778065 77778084 AGAAGAGTGGTGTTCTTCAG 57 77778024 77778044 GAGTCTGTGCATACTACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099384.2 ENSRNOG00000056621 ENSRNOT00000080099 3 1 1 176 14 10694138 10694157 GAATGTGACTGCTTTGATGG 58 10686343 10686361 GAGGAACTCCTGTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr411 ENSRNOG00000007911 ENSRNOT00000010360 3 1 1 60 3 20853168 20853186 CCACACTTCTTCTGTGACC 58 20853126 20853145 TGAGTGATGTGTCAGAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr406 ENSRNOG00000046849 ENSRNOT00000072630 3 1 1 60 3 16184019 16184038 GAATCTGCAAAGCCTTGTCC 60 16184058 16184079 CCATAGTACAAGGAAACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000075993,ENSRNOT00000076766 3 2 6 60 15 36972821 36972841 GCATAGATGCATTTAGCCCAG 60 36972781 36972800 ATACCCATCATTGGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000079918 3 1 2 80 12 2589824 2589842 ACCATTCGGATTCATCGCA 60 2589592 2589780 CTTTCAGCAACCGAACCTC 59 NA Rattus norvegicus 81 RGD1564313 ENSRNOG00000054473 ENSRNOT00000074310 3 1 1 60 2 194434219 194434237 ATCCTTCGAGACTTCCTCC 58 194434261 194434279 GGATGAGCTGGTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex21 ENSRNOG00000038496 ENSRNOT00000088808 2 1 1 82 6 99257870 99257891 GAATCTCAGAGTTTCGGAAGAC 59 99254399 99257827 GTCAGGTGCTCCCTTAGAC 60 NA Rattus norvegicus 81 RGD1307929 ENSRNOG00000011887 ENSRNOT00000016084 1 1 1 80 10 65530138 65530159 GACCTTACTGTGGAAAGTAGAC 58 65530200 65530977 ATCTCTGAAGCACCAACCA 59 NA Rattus norvegicus 81 Aimp1 ENSRNOG00000011384 ENSRNOT00000015213 2 1 1 80 2 237740502 237742408 TTCATAATGGAGTGAAGCAGGT 60 237740443 237740463 GAGTCACACTTTCAGAAACGG 60 NA Rattus norvegicus 81 RGD1559534 ENSRNOG00000001512 ENSRNOT00000002064 1 1 1 60 10 44658994 44659016 TCATAGCTAGTACAGGTATCCAG 59 44658956 44658975 ATCCACTTAGGTTTGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxpe4 ENSRNOG00000031343 ENSRNOT00000060048,ENSRNOT00000060035 3 2 2 83 12 19434587 19434605 TTAGTGGGTCACTCGAGTG 59 19433820 19434540 CTGGTCAGTCACATTCCCA 59 NA Rattus norvegicus 81 Dhx36 ENSRNOG00000014599 ENSRNOT00000019824 2 1 1 80 2 152798182 152798204 TCTGAGTAGGTTAATGGATCCAC 60 152796828 152798142 TCCAAAGCACTCAGTTCCA 59 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 2 2 2 80 7 23836660 23840822 ACCGATGACAGTATGGAAGG 59 23836599 23836617 AGAAGCCTCTTCCACACTC 59 NA Rattus norvegicus 81 AABR07017006.1 ENSRNOG00000049239 ENSRNOT00000072599 1 1 1 80 15 5907467 5907485 ATTGCACTGGAAGAGTCCA 59 5907529 5907731 CAATCCTCCAGTTTCGTGG 59 NA Rattus norvegicus 81 LOC500035 ENSRNOG00000031207 ENSRNOT00000050722 2 1 1 83 4 40161344 40161362 TATCACTGCTGATGTTGGC 58 40161408 40165799 GTATTGGCATGAGTACCCAC 59 NA Rattus norvegicus 81 Zfp786 ENSRNOG00000006925 ENSRNOT00000038550 3 1 1 81 4 77499580 77502749 AGTTACCCGAGAGTAGCCA 60 77499517 77499536 CTCTCCAGAGGATGTATGGG 59 NA Rattus norvegicus 81 Dao ENSRNOG00000054962 ENSRNOT00000077317 2 1 1 80 12 48358606 48358624 AAAGCACTTCATCCTCACC 58 48357193 48358563 GTAACTGTCTTGGAACCTGG 58 NA Rattus norvegicus 81 Minos1 ENSRNOG00000042696 ENSRNOT00000064418 2 1 1 80 5 157548192 157548973 CTTTAAGAGAAGAAAGTGGCCA 59 157548133 157548151 AAGTCATGCTGACAGTTGG 58 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 1 2 2 88 10 105157114 105157133 GCAAGGCTGTTCATTTCCTC 60 105157184 105158209 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000081845,ENSRNOT00000071751 1 2 2 80 15 8741206 8741226 CTGCTATGTAAAGTCTGTGGG 59 8741268 8744468 GAAGAAGCCCTTACAGCCT 59 NA Rattus norvegicus 81 Nrros ENSRNOG00000001752 ENSRNOT00000050364 1 1 1 105 11 71884243 71884261 GATTGTGGAATGGAGGAGC 58 71887706 71887724 TGAAGCGAGGTTCAGACTG 60 NA DesignNoJunction Rattus norvegicus 81 Gimap8 ENSRNOG00000020169 ENSRNOT00000059173 2 1 1 93 4 78283444 78283563 CTCTACCGATCCCTCTTTAGG 59 78283618 78283636 CATCTGACTTCCTGCTGCT 60 NA Rattus norvegicus 81 Rnf207 ENSRNOG00000033722 ENSRNOT00000046552 2 1 1 80 5 169493135 169493154 GTTCATCTGGTCATCTGCTC 59 169492676 169493093 CTCCATCAGCTCATAACCCA 59 NA Rattus norvegicus 81 Slc51a ENSRNOG00000001765 ENSRNOT00000002405 1 1 1 80 11 71546566 71546585 TTCTCCATCTTGGCTAACAG 57 71546628 71547122 ACAGTTCATCACTTGGGAC 57 NA Rattus norvegicus 81 Lifr ENSRNOG00000011696 ENSRNOT00000016036 3 1 1 80 2 56453859 56456061 TTGCATTAAAGACAGGCCC 58 56456105 56456123 TGATCACCGGGTGAAAGAG 59 NA Rattus norvegicus 81 Wac ENSRNOG00000018698 ENSRNOT00000058852 3 1 1 80 17 60895604 60895623 CACACCTCAGACTAACACAG 58 60893863 60895562 GGAGTACTAACCTTTGGCTG 58 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 1 3 3 80 20 27173890 27173908 GTGCAGTTTGCTTCAAAGG 58 27173950 27174504 GATCTCAATATACCTGTGCCC 58 NA Rattus norvegicus 81 Rn60_4_0553.2 ENSRNOG00000007658 ENSRNOT00000010055 1 1 1 60 4 55539519 55539537 GCTCACAAGAGTACGACCT 59 55539559 55539579 TACCAGGCCTGTAATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dytn ENSRNOG00000042181 ENSRNOT00000064447 3 1 1 80 9 70371888 70371906 GTCCAAGTGCATCCAAGAG 59 70370520 70371847 AAGAATTCCTGATCCTGTTCTG 58 NA Rattus norvegicus 81 Olr771 ENSRNOG00000026885 ENSRNOT00000037906 2 1 1 60 3 102860198 102860217 ACCACTCCACTATTTCACCA 59 102860239 102860258 GGAAATTAACACCAGTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc4h2 ENSRNOG00000056735 ENSRNOT00000084107 2 1 1 81 X 64893911 64908520 GAGATCAGGAACAAGACTCTG 58 64893850 64893868 TCTCTTCAGACTCCAGAGC 58 NA Rattus norvegicus 81 RGD1565131 ENSRNOG00000025212 ENSRNOT00000038919 2 1 1 81 12 12203939 12204072 AGTCTGTTGCTGAGGAGAG 59 12204117 12204135 GTGGAATCTTCACCAACCC 59 NA Rattus norvegicus 81 Igf2r ENSRNOG00000014997 ENSRNOT00000021840 1 1 1 80 1 48227475 48228498 GTGTGCTGTGGATAAGAGTG 59 48228540 48228559 AGCTGAATGTGTCCTTTCTC 58 NA Rattus norvegicus 81 Tmem17 ENSRNOG00000009220 ENSRNOT00000012224 1 1 1 81 14 107306334 107306488 GCTGCACCTGAAGTATTCG 59 107306528 107306551 CTCAATCAAGGTTATGAGGATGAC 59 NA Rattus norvegicus 81 Ezh2 ENSRNOG00000006048 ENSRNOT00000008149 3 1 1 80 4 77310742 77329336 ACTAGGGAGTGTTCAGTGAC 59 77310681 77310699 CGATGCGACAGCATTTAGG 60 NA Rattus norvegicus 81 Fam20c ENSRNOG00000001314 ENSRNOT00000001783 3 1 1 81 12 17929910 17929929 CAACATGACCAAGGAGATCC 58 17919020 17929866 GATGTTGTTGGCTGGAGAC 59 NA Rattus norvegicus 81 Gstt3 ENSRNOG00000001242 ENSRNOT00000036518 3 1 1 86 20 13822761 13822779 CTCGTGTGGATGAGTACCT 59 13822829 13824510 ACTGACAGGTCACCTTCTG 59 NA Rattus norvegicus 81 Rn60_5_0815.8 ENSRNOG00000051112 ENSRNOT00000075881 2 1 1 80 5 77564305 77564685 GCTTTACGAACAAAGGATCTG 58 77564245 77564263 GTCCCTAGTGATTCCATGC 58 NA Rattus norvegicus 81 Spag16 ENSRNOG00000042609 ENSRNOT00000068450 2 1 1 80 9 77605547 77772376 CAGGTAGGGTATTGAGAAGGG 59 77833167 77833186 CCAGTTTGTGAATTTGCCCA 60 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 3 2 2 80 4 87244864 87245962 CGAAGAAAGTTACTGCAGCT 59 87244803 87244821 AGGGAACTTCTCTTCCACG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 1 7 7 80 15 5464585 5464605 GACCAACTGGATAAGTGATGC 59 5464082 5464543 TGGAAGTTTCTGATGCGGT 60 NA Rattus norvegicus 81 Sgol2 ENSRNOG00000027035 ENSRNOT00000029526 1 1 1 80 9 64903542 64905099 GAGCAGTCTTTCTGAGTTCC 58 64905141 64905160 GGCTTGCATTGTTTACTGAC 58 NA Rattus norvegicus 81 Vom1r101 ENSRNOG00000029263 ENSRNOT00000042796 2 1 1 60 4 119398396 119398414 CATCCTGCTGCTTATGACC 58 119398354 119398372 GTGGAAGATAACAGTGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911985 ENSRNOG00000045672 ENSRNOT00000075478 1 1 1 60 4 1509272 1509290 GTTCATCTAAGGGCAGGTC 58 1509312 1509332 GAAACAACAATGATGTGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irak4 ENSRNOG00000005965 ENSRNOT00000007932 2 1 1 80 7 135816936 135816956 ATTTGGAGTGGTGTACAAAGG 59 135816996 135818804 GTACTGATTTCCACCATTGCT 59 NA Rattus norvegicus 81 Zar1l ENSRNOG00000051294 ENSRNOT00000076716 1 1 1 80 12 495067 495086 AAACAGCTCTGTAGCAAGTG 59 491168 495024 GGAACTTAAGCAGGTCTGG 58 NA Rattus norvegicus 81 Zar1l ENSRNOG00000051294 ENSRNOT00000076716 3 1 1 81 12 495067 495085 AACAGCTCTGTAGCAAGTG 58 491166 495023 CAGGAACTTAAGCAGGTCTG 58 NA Rattus norvegicus 81 Igf2bp1 ENSRNOG00000006122 ENSRNOT00000008139 2 1 1 81 10 83792841 83792859 TGAACACCGAGAGTGAGAC 59 83791791 83792798 TTTAGCTTCATGATGGCTTGC 60 NA Rattus norvegicus 81 Plin3 ENSRNOG00000048834 ENSRNOT00000070978 1 1 1 80 9 10777397 10779444 AGAACTAGCCCTGATTGCC 60 10779486 10779506 AAGTAGCTCCTTTCCTGTCTC 59 NA Rattus norvegicus 81 Zpbp ENSRNOG00000027801 ENSRNOT00000039182 1 1 1 88 14 91491359 91491377 AAGTCTGAATGCCATCGTG 58 91469015 91491310 TCAGTGTCTATAGATGCAACTG 58 NA Rattus norvegicus 81 Fzd3 ENSRNOG00000047211 ENSRNOT00000071464 1 1 1 80 15 48618288 48645471 TCCGTACCAGGTTACTCAG 58 48618226 48618244 ATCCCAACTATGAGAGCCA 58 NA Rattus norvegicus 81 Slc5a5 ENSRNOG00000018822 ENSRNOT00000025576 3 1 1 80 16 20301357 20301375 TGGAAGACCTCATCAAGCC 59 20301415 20301516 AGATGAATGAGAGCCCTTTAGAG 60 NA Rattus norvegicus 81 Pgls ENSRNOG00000018326 ENSRNOT00000024827 2 1 1 61 16 20023816 20023834 TATGCCAGGAAACTGAGGC 60 20024316 20024334 ATCAGCAGGTCAAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496 2 1 2 80 2 187366504 187367717 GTCTACTGCTTCCGAGACTC 60 187366443 187366462 AATGGCCTCTAGTCCATCAG 59 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 3 2 2 92 6 107607361 107607380 CATAGAGAAGATGGACGCGT 60 107609343 107609799 GAAAGCTTCCCTCATGATTGAC 60 NA InUTR Rattus norvegicus 81 Naprt1 ENSRNOG00000007939 ENSRNOT00000010637 2 1 1 97 7 116923358 116923376 CTCTGGAAGAGTCCAGAGC 59 116923189 116923298 CAATGCGACCTGGTATACAG 59 NA Rattus norvegicus 81 Cdyl2 ENSRNOG00000042888 ENSRNOT00000068440 1 1 1 80 19 49114403 49114421 AAGGAAGAGGGCTTCACAC 60 49108014 49114362 TTCCTTCATGATCTCAGGAGTC 59 NA Rattus norvegicus 81 Rad54b ENSRNOG00000039949 ENSRNOT00000061370 2 1 1 80 5 25211059 25213565 GAAAGATCACTCTGATGATGCG 60 25213606 25213624 GAGGAGCTGGACTTCTGAG 59 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076990 2 2 3 84 13 77952926 77954663 GTAATTATGGATGGGATCAGTCAG 59 77952865 77952883 ACATTCTCAGCAGGAACCT 59 NA Rattus norvegicus 81 RGD1561277 ENSRNOG00000023431 ENSRNOT00000061005 3 1 1 114 10 45201910 45201928 GTGTCTGTGGACTTCACCT 59 45202004 45205504 CACATTGATTCAAGGACAGCA 59 NA Rattus norvegicus 81 Ncoa6 ENSRNOG00000018288 ENSRNOT00000024714 1 1 1 80 3 150939249 150941720 TCACCAGGATCTAAACACCC 59 150939188 150939208 CCTTGTTCTCCAGGTAATGAC 59 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045329,ENSRNOT00000045821 3 2 2 83 8 107231149 107231449 ATGGGAAGGAAGAGATAAGAAGAG 60 107231491 107231509 CTTTGGTCTTTGCAGCTCC 60 NA Rattus norvegicus 81 Ndrg1 ENSRNOG00000007393 ENSRNOT00000010811 2 1 1 80 7 107741347 107742348 CCACCCTACTCAAGATGGC 60 107739099 107739117 AGTACTTGAAGGCCTCTGC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 1 2 2 80 1 88558195 88558296 ACCAGCGAATTCATGTAAGAG 59 88558135 88558155 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Zfp867 ENSRNOG00000022431 ENSRNOT00000038951 2 1 1 88 10 45812120 45812523 CTTCTATAGAGAAAGGGTGGG 57 45811576 45811594 AGAGTTGGCTATGATGTGC 58 NA Rattus norvegicus 81 Ino80d ENSRNOG00000024272 ENSRNOT00000035879 2 1 1 80 9 69854167 69859858 TTTCCTCACTTAGGGCTGG 59 69854105 69854124 GACCTGATATGGTGAAGCCT 59 NA Rattus norvegicus 81 Dda1 ENSRNOG00000039417 ENSRNOT00000060404 3 1 1 104 16 19881159 19881178 GCAACTTCAGCAGATTCCAC 60 19881321 19883091 TCACGATGATCTGCTCTGAC 60 NA Rattus norvegicus 81 St6galnac1 ENSRNOG00000000251 ENSRNOT00000042321 1 1 1 80 10 105715437 105716057 ATGACTACGTCTTCCGACTG 59 105715376 105715394 AGCCATAGAAGGATGTCCG 59 NA Rattus norvegicus 81 Olr230 ENSRNOG00000019599 ENSRNOT00000026506 2 1 1 60 1 171179128 171179152 CCTTTCTAGCCATCTATTTAGTCAC 59 171179169 171179188 AAGGTCACCAGAATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 2 1 1 145 X 105419330 105421353 GCCACATTGAAATTGCATTGAG 60 105421459 105421477 AAGAAGCGCATCACTTCCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nup210l ENSRNOG00000055790 ENSRNOT00000087063 1 1 1 80 2 189540099 189540117 CCATGCTCACATTCCACTG 59 189540156 189543339 GTTGTAGAAATACCTCTGAATGCC 60 NA Rattus norvegicus 81 Atxn7 ENSRNOG00000007246 ENSRNOT00000010103 2 1 1 80 15 12440079 12440097 ATCCTGACATCCACTGTGG 59 12434766 12440036 AGGAATGTGTCTTGCAAGTC 59 NA Rattus norvegicus 81 Zfp496 ENSRNOG00000003129 ENSRNOT00000058308 1 1 1 80 10 45840202 45840221 GCACAGACTGGTTTCTATGG 59 45839718 45840161 CTGAACTGGAGACTCATTTGG 59 NA Rattus norvegicus 81 Ndn ENSRNOG00000010146 ENSRNOT00000013468 3 1 1 60 1 122982162 122982180 TGGTCAAGGACCAGAAGAG 59 122982204 122982222 CCCATGACCTCTTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp1 ENSRNOG00000003553 ENSRNOT00000004764 2 1 1 80 14 113276297 113276318 ACATTCTTGGCTCATTCATCTG 59 113276356 113277468 CATCGATGTCTTCACAGTTGAG 60 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 3 2 2 80 5 139711370 139711390 TCCGAGTACAAGAACTACCAC 59 139708845 139711331 CTTCTGCACTGATCATCTTCAC 60 NA Rattus norvegicus 81 Oog3 ENSRNOG00000033000 ENSRNOT00000055741 1 1 1 80 5 99042707 99043260 GAAAGGTTTGCTCCAGTAGG 59 99042646 99042667 CAGCCCATATTCCAGATAACTC 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851,ENSRNOT00000076892 3 3 3 88 13 77000142 77000160 CAAGACGAAAGCGACTCAC 59 77000208 77004120 TCTACTGTCATCTGAGATACGAG 59 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 1 2 2 80 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886902 151886920 TCCTGAAGCAGGTAAGCTG 59 NA Rattus norvegicus 81 Pah ENSRNOG00000004302 ENSRNOT00000005844 1 1 1 80 7 28127603 28127621 ACCCTTACACTCAAAGGGT 58 28127662 28129168 CGACCTCACTATTAATGGAGTC 58 NA Rattus norvegicus 81 Kpna7 ENSRNOG00000042296 ENSRNOT00000038175 3 1 1 80 12 11359395 11363766 GGGAATATAGCTGGTGACTG 58 11363808 11363827 AATAAGGTTGATCAGGTGCG 58 NA Rattus norvegicus 81 Eif2b4 ENSRNOG00000005301 ENSRNOT00000007763 1 1 1 80 6 26552113 26552241 CGAGCTAGATGACCCTGAC 59 26552284 26552303 AGTGATGAGTTGTTCTGCCA 60 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 3 1 1 140 11 65759136 65759154 CCAGGTACTCAACCTCAGC 60 65751683 65759034 TCTAAACTCTGCAAGTTCTCG 58 NA DesignNoJunction Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 2 2 2 80 16 18699877 18704782 CTAAGACTCAGGTAACAGTTCAG 58 18704822 18704840 CAGAGATGACGATGGTGTG 58 NA Rattus norvegicus 81 Tns1 ENSRNOG00000014182 ENSRNOT00000035277 2 1 1 80 9 81196844 81196863 TTCTTCAGACGACATTACCC 57 81196444 81196802 CTCTGTCTTCATCCACTTCC 58 NA Rattus norvegicus 81 Lcn9 ENSRNOG00000027821 ENSRNOT00000044284 3 1 1 81 3 3272685 3272703 GACCTGAGGCTCTTCATCC 60 3272746 3273052 CTCCGTGTATCATGATGTGGA 60 NA Rattus norvegicus 81 Josd1 ENSRNOG00000014440 ENSRNOT00000019612 2 1 1 82 7 120908492 120908511 ATGTGAATGTCATCATGGCG 59 120908313 120908447 AATAACACCCACGTCCCTG 60 NA Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 1 2 2 81 10 104997971 104997989 CACCATTTCCCTATCACCG 58 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Tmem52 ENSRNOG00000016618 ENSRNOT00000022286 2 1 1 88 5 172888659 172888800 CACTGTGACCTCCTACAGC 60 172888852 172888870 GTACCATGGAGTCAGGGTC 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000056436,ENSRNOT00000089402 3 3 3 80 2 195864955 195864973 ATCCAGTCAAAGGATGCCA 59 195863934 195864915 GTCATGCATCTCTAAGTTCTCAG 59 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000042594,ENSRNOT00000013026 2 3 3 84 6 107289429 107289447 TCATTCCGTGTCACAACTG 58 107286875 107289381 CTGTCTCAGCTTTCTTGGC 59 NA Rattus norvegicus 81 Ints7 ENSRNOG00000004263 ENSRNOT00000005715 1 1 1 80 13 110284006 110284025 TAGGGATGTTGTCTGTCCTC 59 110284068 110288820 CTACATTTCCTGGAGCCAC 58 NA Rattus norvegicus 81 Plek2 ENSRNOG00000010098 ENSRNOT00000014125 2 1 1 80 6 102078029 102080307 GACCCTTCCAAAGAAGATAACAG 59 102077971 102077990 ACCATTATCCTCCAGTGCAG 60 NA Rattus norvegicus 81 Pef1 ENSRNOG00000013972 ENSRNOT00000018742 2 1 1 92 5 148337320 148340910 GACCTTATGGACAGGGTGG 60 148340965 148340984 AGATATAGCCACTGTGGTCG 59 NA Rattus norvegicus 81 Olr53 ENSRNOG00000031110 ENSRNOT00000043023 2 1 1 60 1 167970606 167970625 ACTCCTATTGCTTCCATCCT 58 167970565 167970585 CTGTTGATCTTTGTGTCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsl4 ENSRNOG00000019180 ENSRNOT00000026057 3 1 1 80 X 113609689 113609707 CACTACTGGAAGAGTTGGC 58 113608374 113609647 TGAACTGTATAACCACCTTCC 58 NA Rattus norvegicus 81 Arhgap23 ENSRNOG00000022771 ENSRNOT00000034305 1 1 1 80 10 85416815 85432496 AGACACTAATCCAGCATTCTG 58 85433367 85433385 GCTCCTTGTCATCAACAGG 59 NA Rattus norvegicus 81 Psenen ENSRNOG00000020941 ENSRNOT00000028438 3 1 1 80 1 89016343 89016550 TCAAAGGCTATGTTTGGCG 59 89016281 89016300 TCTGGAAGATGGTGATCCAG 59 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 1 2 2 80 20 13606634 13607570 TGCAGATGACCATCTCCAC 60 13606572 13606596 CTCATATCTTTGTCTAAAGCCACTC 60 NA Rattus norvegicus 81 LOC100362643 ENSRNOG00000042804 ENSRNOT00000067815 3 1 1 60 4 142970216 142970238 ACAAGCAGATCTACTACTCAGAC 60 142970178 142970196 ATGACATGCCAGTACTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gjb1 ENSRNOG00000003746 ENSRNOT00000076034 2 1 2 68 X 71272043 71272061 CTGCATACATTCCCTGGGA 59 71272092 71278016 TTATACCCAGTGTCTCCCTG 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Rad51ap1 ENSRNOG00000059878 ENSRNOT00000088333 2 1 1 80 4 159474130 159474148 CAGAGGAGGAAGCTCTCAG 59 159473037 159474086 TGAATCTTCACCAGTCGCA 59 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000089991 3 1 2 80 7 92241631 92241650 AGCTACGACTGGTCTATGAC 59 92241691 92244873 CATATGGAATCAGTTGCTCCA 58 NA Rattus norvegicus 81 P3h1 ENSRNOG00000053991 ENSRNOT00000084651 2 1 1 80 5 138291037 138292578 CTGCAATAGAAGAGTCACAGG 59 138292620 138292638 ATTCGGCATTCAGAATGCA 58 NA Rattus norvegicus 81 Eya4 ENSRNOG00000016627 ENSRNOT00000022362 2 1 1 80 1 23600088 23602387 AACAATGTCGGAGGTCTCC 59 23602429 23602449 ATCTGTTAGGCCTTCGATCTC 60 NA Rattus norvegicus 81 RGD1359449 ENSRNOG00000059240 ENSRNOT00000090226 3 1 1 80 7 104508693 104509091 GAGCTAGAGGATACGCTGG 59 104509135 104509153 GCATAAGACACAGCCTCCA 60 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000000438,ENSRNOT00000056047 1 2 2 80 20 27296256 27296277 TTCATTACTACAAAGCTGGGAG 58 27293634 27296216 GATAACTGCTGTCATGCCTG 59 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000052968 ENSRNOT00000078872 2 1 1 80 3 62484866 62484980 AACTTTGGTGGAAGAGGAGG 60 62485019 62485041 ATTATATCCACCATCACCACCTC 60 NA Rattus norvegicus 81 U2af1l4 ENSRNOG00000024497 ENSRNOT00000038154 1 1 1 80 1 89018164 89018269 GATCACACTGTCACGTGAG 58 89018388 89018407 CCTGCAGTTCTGTGAATACC 59 NA Rattus norvegicus 81 Ntn3 ENSRNOG00000006970 ENSRNOT00000009735 1 1 1 80 10 13578714 13578858 CTTGTGTTAAGACTCCTGTCC 58 13578538 13578557 GTCTGCAATGTGACTCACAG 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083,ENSRNOT00000080338 2 3 4 80 1 189389912 189389932 GAAGGATACATTGGCATCAGG 59 189389972 189391801 TGTCTTCTCTGGGCTATTCTC 59 NA Rattus norvegicus 81 Olr770 ENSRNOG00000047449 ENSRNOT00000075178 1 1 1 60 3 102841830 102841849 GCTTTCCTCAGTTACCACTC 58 102841872 102841890 AATGGTCTTGTGTTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcc1 ENSRNOG00000009787 ENSRNOT00000013274 3 1 1 81 4 119635723 119652553 CTTAGACGTTACCGGTCAG 57 119652596 119652616 GTTCACCATTCTTGTTTCCTG 58 NA Rattus norvegicus 81 Acyp2 ENSRNOG00000042419 ENSRNOT00000067998 1 1 1 81 14 115033027 115033046 GCTGGGTGAAGAATACAAGC 59 114891977 115032985 CAGGACTTCATGGAATTGACC 59 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520,ENSRNOT00000083269 2 2 2 92 15 104101942 104101960 AGTGTACCAAAGTCGGAGG 59 104102015 104102122 TCATGGAACACAGACCTGAC 60 NA Rattus norvegicus 81 RGD1560289 ENSRNOG00000022155 ENSRNOT00000029055 3 1 1 80 4 123804618 123804637 ATTATTGAGTTGCCTGACCC 58 123804678 123805604 GATCCTTTCGGCTTCTATGTG 59 NA Rattus norvegicus 81 Pbld1 ENSRNOG00000000386 ENSRNOT00000000434 3 1 1 80 20 27106315 27106733 GCGATTCTTATGACAGGTCC 59 27106254 27106275 CCTTTCCTGTCTTCTCAATTCC 59 NA Rattus norvegicus 81 Tollip ENSRNOG00000019861 ENSRNOT00000046344 1 1 1 80 1 214833642 214833660 AGTGGTATAGCCTGAGTGG 58 214832427 214833598 CTGGAAGGGACGTATAGGA 58 NA Rattus norvegicus 81 Zfp593 ENSRNOG00000016392 ENSRNOT00000021937 1 1 1 137 5 152464640 152464659 GACCTGGATGAGATCCATCG 60 152464297 152464540 ATCGATGAAGTACCTCGCG 60 NA Rattus norvegicus 81 RGD1309594 ENSRNOG00000001215 ENSRNOT00000049745 2 1 1 80 20 11419254 11419685 TACACAGAGGAGACAGAAGTC 59 11419194 11419215 ATTCTTCATAGTGTCCCTTGGT 59 NA Rattus norvegicus 81 Il13ra1 ENSRNOG00000013170 ENSRNOT00000017746 1 1 1 80 X 122745116 122753044 TTTACTATTGGTACAGCAGCCT 60 122753083 122753103 AGGAACAACCAATGTGTTGAC 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483,ENSRNOT00000041365,ENSRNOT00000077167 2 3 4 80 12 5671423 5671444 ATCCTTAAAGACATTCGAGCAC 59 5669579 5671384 AAATCTTCTGTGGTGAACTGG 59 NA Rattus norvegicus 81 Nxt2 ENSRNOG00000019168 ENSRNOT00000025912 3 1 1 104 X 113514255 113514273 ATGTTGTTACAGGGCTGGA 59 113514340 113515077 TAGCTTGCTCATGAACTGGT 60 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000079524,ENSRNOT00000085650 2 3 3 80 7 104672316 104672337 GATGAGCTCACATTTATTGAGG 57 104670136 104672275 TTCGATATGCCCAATCCAC 58 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 1 2 2 80 6 55482106 55484779 AGAATTGTGTTTGTGGACCC 59 55484822 55484840 TTCGTAAGCGTAGAGACGG 59 NA Rattus norvegicus 81 Tmem203 ENSRNOG00000010894 ENSRNOT00000014454 2 1 1 60 3 2475488 2475506 CCAGAAGCTAGTGGAGCAG 60 2475528 2475548 GAAGACCGGAGAGGTAATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099444.1 ENSRNOG00000024617 ENSRNOT00000033807 3 1 1 107 4 78263891 78263909 ATGAGTATGGTGGTCAGCC 59 78264502 78264520 CACTTCCGGATGCAATCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 3 1 1 99 5 169507809 169510110 TTTGAGCAGTTCCTCCAGG 60 169510172 169510191 CAGTGATCTTGCTCTTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Vwce ENSRNOG00000060269 ENSRNOT00000079679 3 1 1 80 1 226694104 226694122 GAAGGTGGCTTCGTATGTG 59 226694166 226696753 GCACTCATCAGTGTCTTGG 59 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536,ENSRNOT00000025270 2 2 3 122 18 47630895 47630914 CATCCATGAGCCACAATGTC 59 47630999 47633963 TCGTAGAATCCTTTGGCGG 60 NA Rattus norvegicus 81 Paqr3 ENSRNOG00000002035 ENSRNOT00000032130 1 1 1 80 14 14118771 14120861 CATTGTACAGGACTTCGCTC 59 14120901 14120922 ACTTTGGAGATGTAGAACAGGA 59 NA Rattus norvegicus 81 Btnl8 ENSRNOG00000029340 ENSRNOT00000041348 3 1 1 80 20 2847812 2848173 TCCAGACCTGGACTTTCAC 59 2847750 2847769 GGGTCACTCTCATCCTATCC 59 NA Rattus norvegicus 81 Krt82 ENSRNOG00000033403 ENSRNOT00000029461 3 1 1 80 7 143200539 143201071 ACCTTGAAGAAGGATGTGGA 59 143200478 143200499 AATCTCATGTTCTAGAGCCTCC 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558,ENSRNOT00000010991 2 3 3 80 8 68154115 68159498 AATGCTTATATGGCACCCGA 60 68154054 68154074 GAAAGAGATCCCTAAGCTCCA 59 NA Rattus norvegicus 81 AABR07030375.2 ENSRNOG00000049667 ENSRNOT00000072972 1 1 1 153 10 83104674 83104988 GAACCTCAAATGCTCTGCG 60 83109618 83109636 AACCACAGCTCGATCTCAG 60 NA Rattus norvegicus 81 Jmjd6 ENSRNOG00000000250 ENSRNOT00000064671 1 1 1 80 10 105783267 105783285 CTCTGACAGCTCCAGTGAC 60 105782068 105783224 TCTGACCCAGATTCACACTC 59 NA Rattus norvegicus 81 Dgkg ENSRNOG00000001796 ENSRNOT00000002452 2 1 1 80 11 82072629 82072647 GAAGAGGTGGAGAACGGAG 60 82072690 82082208 TGCAATTGAAGCATCCACAC 60 NA Rattus norvegicus 81 AABR07061136.1 ENSRNOG00000033938 ENSRNOT00000052417 3 1 1 60 4 106361796 106361816 ACATCAAGATGACCCAGTCTC 60 106361837 106361856 ATGGTGACTCTTTCTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plin2 ENSRNOG00000007060 ENSRNOT00000009749 1 1 1 81 5 104998901 104998919 CTGTCTCATGGGTGGAGTG 60 104997844 104998856 TGTGACTCGATGTGCTCAG 60 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103,ENSRNOT00000089408 1 2 2 80 18 63242242 63242263 GAAGGAAACTCCTACAAATGTG 57 63240146 63242204 CTGGTTATCCTAGGAACAAGAG 58 NA Rattus norvegicus 81 Zfp410 ENSRNOG00000010985 ENSRNOT00000014738 2 1 1 80 6 108037240 108038112 GAATCCAAACCAGAGCTCC 58 108038154 108038174 AGCTTCTGATTCTACTAGCCC 59 NA Rattus norvegicus 81 Ssu72 ENSRNOG00000017829 ENSRNOT00000024349 2 1 1 80 5 173181704 173182157 TGACCAGGTTGTAGAAGATCTG 60 173182197 173182216 TCCTGGATGTCCACATTGAC 60 NA Rattus norvegicus 81 AABR07064392.1 ENSRNOG00000046896 ENSRNOT00000072117 2 1 1 89 6 78817531 78817549 CGTTCGGTTCCTAACTGTG 59 78816813 78817481 TTTATAATGGTGTACCCAGCTC 58 NA Rattus norvegicus 81 3298a3 ENSRNOG00000057560 ENSRNOT00000082597 1 1 1 60 20 2280012 2280030 CTGTTGTAATCGCCCTGAC 59 2280053 2280072 GCCTCCATGTTCTGTATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412,ENSRNOT00000091052 2 2 2 80 10 46157304 46159911 CACATGAGACAGGTCTTGG 58 46157242 46157262 TTTCCAGATCACCTGATTACC 58 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025952 2 1 3 80 5 173275824 173275845 GTAAACTGATCAAGAGGACACG 59 173275883 173276001 TCTCAAACTTGATCTGCTTCCT 60 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 2 3 3 80 8 100043154 100043752 AATATAGTCGAGCAGCCCT 58 100043795 100043814 TTCTTCTACCAACTCGTCAC 57 NA Rattus norvegicus 81 Fam229a ENSRNOG00000042787 ENSRNOT00000064855 1 1 1 60 5 147693319 147693338 CAGAAATCTCCGGTTGTCAG 59 147693359 147693379 GAGAAACGAAGATGTCATTGG 57 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 1 2 2 80 3 71275255 71276199 GTACTCACAAGTTTCACAGGA 58 71275195 71275214 TGACTTGTCTGTCAATAGGG 57 NA Rattus norvegicus 81 AC105693.1 ENSRNOG00000058416 ENSRNOT00000079544 2 1 1 80 2 143984452 143987234 TTATCAACACTCAGACTTCCG 58 143987275 143987294 TTGTTCAGTTCGTAGTAGGC 58 NA Rattus norvegicus 81 Ihh ENSRNOG00000018059 ENSRNOT00000024419 1 1 1 80 9 82209681 82211248 TCTGTCAAGTCTGAGCACTC 60 82209620 82209638 CCCAGTTTCTAGGTGGACC 59 NA Rattus norvegicus 81 Atf6 ENSRNOG00000024632 ENSRNOT00000029202 2 1 1 80 13 89170761 89170785 GAACCATTACTTTATATCCCTCCAC 59 89170141 89170725 AAGTTCATGGTTCAACCTGAG 59 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 3 1 1 60 17 62298105 62299608 TAATGTGACCATCATGGGCA 60 62298064 62298084 CACCAGCATTCTTAGCAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000076345 1 1 3 89 13 76649778 76658801 CATCATTGCAGCTACTTCCC 59 76649708 76649726 ATTAGGATGGACTGGCCAG 59 NA Rattus norvegicus 81 Cldn1 ENSRNOG00000001926 ENSRNOT00000002640 3 1 1 81 11 77815609 77823966 ATCTGAATAGTACTTTGCAGGC 59 77824008 77824026 GTGGACACAAAGATTGCGA 59 NA Rattus norvegicus 81 Rn60_X_0725.2 ENSRNOG00000051067 ENSRNOT00000076314 2 1 1 60 X 71648327 71648347 TGAGAACTGGTTCTACACAGG 60 71648369 71648387 ACCACCATGGAGATACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551702 ENSRNOG00000032548 ENSRNOT00000042191 2 1 1 81 20 43593263 43607740 AAATGGAGCGAGATCCCAC 60 43607784 43607803 GACAATGGCTTGATCCTCCT 60 NA Rattus norvegicus 81 Trim11 ENSRNOG00000002915 ENSRNOT00000047268 2 1 1 83 10 45325635 45325653 CCTGCGGAAACAAATGGAG 60 45325700 45326377 CTCTCCACCATCTTCTGCC 60 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968,ENSRNOT00000085929 1 2 2 80 5 163206356 163208677 CAGATCCAGGTAATGCAGAG 58 163206295 163206316 TTTCTGAAGTACTGATGTCAGG 58 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968,ENSRNOT00000085929 2 2 2 80 5 163206360 163208680 GTCCAGATCCAGGTAATGC 58 163206298 163206317 CTGAAGTACTGATGTCAGGG 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305,ENSRNOT00000084906 1 2 2 80 12 2148421 2150039 TATTACGACTTGAGGAGGTGTG 60 2150080 2150098 AGTCTTGTACCAGCTGGAG 59 NA Rattus norvegicus 81 Fras1 ENSRNOG00000002053 ENSRNOT00000002814 2 1 1 80 14 14455782 14461482 AGAACATCCGAACAGAATCC 58 14455721 14455740 CATGTCGGTCTGAGATTAGG 58 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 1 3 3 80 3 95724044 95724062 CACATCCCTATCAGCAGCA 60 95724105 95724237 TGTAAAGGAGGAGACAGGTG 59 NA Rattus norvegicus 81 Vom1r47 ENSRNOG00000034101 ENSRNOT00000051024 3 1 1 60 1 67025529 67025547 ATGCAATGTGCCTACTGAG 58 67025571 67025589 CACCTAGAGTTGCTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pspn ENSRNOG00000049171 ENSRNOT00000071188 3 1 1 92 9 10044828 10044846 GATCTTCAAGAGGCTCCTG 57 10044901 10045008 ATTGTTGTTACCCTGATGGG 58 NA Rattus norvegicus 81 Grpel2 ENSRNOG00000042682 ENSRNOT00000065046 2 1 1 88 18 57042621 57043528 GGATTTAACACTGAGATACCAGAG 59 57042556 57042576 ATATCTTCGCATCTTCCACAC 58 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000085067,ENSRNOT00000036993 1 2 3 85 2 243686339 243686357 ATCCTCTGATCACCCACAC 59 243686406 243687173 GACACAGCGGATACATTGC 59 NA Rattus norvegicus 81 Prox2 ENSRNOG00000005054 ENSRNOT00000006704 1 1 1 82 6 108912346 108912364 AGTCCTCCGAGACTCAGAG 60 108911875 108912300 AGAAGCATTCTGGGACCTC 59 NA Rattus norvegicus 81 Calhm2 ENSRNOG00000020325 ENSRNOT00000027526 3 1 1 81 1 266909268 266911260 TATGAGTCCCAGCTCTTTGG 59 266909206 266909226 AGTAATGCTTGAAGCACTTGG 59 NA Rattus norvegicus 81 Il17rb ENSRNOG00000015498 ENSRNOT00000072778,ENSRNOT00000020823 2 2 2 80 16 6066341 6067218 TAACTTGGAGGCAAGGAAGG 60 6066280 6066298 CCACCAGGACCTTAACGAG 60 NA Rattus norvegicus 81 Ndufaf4 ENSRNOG00000007506 ENSRNOT00000010073 3 1 1 85 5 39251466 39251484 GAGATCAGCAAGAGGAAGC 58 39251532 39251813 TCTGGATACTGACTCAGGTG 58 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 3 2 2 87 10 46314837 46327719 ATCAAATGCATGGACAAGGA 58 46327769 46327787 CTATGAGCTTCCGCATCTC 58 NA Rattus norvegicus 81 LOC100363333 ENSRNOG00000032647 ENSRNOT00000041124 2 1 1 81 14 15950443 15950461 CAATTGCCTCCAGCATCTC 59 15950506 15951289 AGTCATCAGGGACCCTAGG 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000081095,ENSRNOT00000025723 1 2 5 82 1 100088390 100088409 ATTGGTACAACTTTCTGCGG 59 100088449 100089332 CGATAATTCTTGCTATAGCAGTGG 60 NA Rattus norvegicus 81 Slc25a43 ENSRNOG00000012756 ENSRNOT00000017026 1 1 1 80 X 123362830 123382152 AAAGATGCAGGCTCAAAGC 59 123382196 123382214 CTGAAGCAGTCAACTGCTC 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000076958,ENSRNOT00000071067 1 2 3 80 12 24606994 24612392 TACATTCAGTATGTGCAACGG 59 24606934 24606952 GTGCTCATCTGCTTCTGAC 59 NA Rattus norvegicus 81 Efhd2 ENSRNOG00000013783 ENSRNOT00000018864 1 1 1 98 5 160410285 160411462 CTTCCGGGAGTTCCTTCTG 60 160410205 160410223 ACATCAATCTCGGAGAGGC 59 NA Rattus norvegicus 81 Olr107 ENSRNOG00000015901 ENSRNOT00000021282 3 1 1 60 1 168623737 168623755 CAGCGTCTATGGATTGGTC 58 168623778 168623797 TAAGATGAAGATTGCGTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 1 2 2 80 4 89120760 89128656 CATCAATCCGGAATGAAGGC 60 89128781 89128803 GGCATCAAAGATGAAAGGATAGG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 2 3 3 80 10 84630212 84631884 GAGACCAACTTAACAGTTGCT 59 84630152 84630171 CCTTCTCTTCACTGAGAGGT 59 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 1 2 2 119 5 160575351 160575369 CTATCCATCTGCCTGAGCA 59 160571605 160575268 CTCTTCCTGGCTGTCTTCC 60 NA Rattus norvegicus 81 Klf7 ENSRNOG00000046242 ENSRNOT00000072007 3 1 1 89 9 70787338 70787356 CTGTCAGTTTAACGGGTGC 59 70749447 70787286 CTTGTAAGGCTTCTCACCTG 58 NA InUTR Rattus norvegicus 81 Armc4 ENSRNOG00000018905 ENSRNOT00000025585 2 1 1 80 17 60337102 60343496 CATTACCAAGCTGGTTGCTC 60 60343539 60343557 TCCCTCGTTTCATACAGGC 60 NA Rattus norvegicus 81 Selenbp1 ENSRNOG00000053812 ENSRNOT00000088465 3 1 1 80 2 196106511 196107261 CTCACTGGGCAGATCTTCC 60 196106449 196106467 ACACGTTAGCTCTTGGTCC 60 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481,ENSRNOT00000013353 3 2 2 80 7 117131211 117131311 TGAAGCATAAGGGCTTTGC 59 117131149 117131168 TCACAGAGTTCATCTGCTCC 60 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000061795 ENSRNOT00000084410 2 1 1 81 1 220010467 220010485 CTTTGTACACATGGAGCGG 59 220010528 220015533 CATTCGTTTGCCTTGAAACTC 59 NA Rattus norvegicus 81 Hes5 ENSRNOG00000013850 ENSRNOT00000018769 2 1 1 79 5 172364755 172364773 TCAGCTACCTGAAGCACAG 59 172364906 172364924 GTAACCCTCGCTGTAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627,ENSRNOT00000065931 1 2 2 80 19 26194565 26194694 CAAAGTGCTGAGGTATAAGCC 59 26194733 26194754 AGAAGATTCATGTAGTCCGGAG 60 NA Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 3 2 2 91 14 17143420 17145150 CAACGTTCCTACTCCAGGT 59 17143347 17143365 CTGTGTCTGACGGAAGGAG 60 NA Rattus norvegicus 81 LOC100910990 ENSRNOG00000046990 ENSRNOT00000067490 3 1 1 80 3 152151972 152152144 ACGATTTCAGAATGCTCCAC 59 152151911 152151932 TTGAAGTAGGAAACCATCTGAG 58 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 3 3 3 90 7 123134431 123134449 TCCTCACAGTGAAAGGTGG 59 123134503 123135293 CAAATTGTTGCCATGCCAG 59 NA Rattus norvegicus 81 Stc1 ENSRNOG00000015075 ENSRNOT00000020728 1 1 1 80 15 50894437 50900090 TCCAACAGATACTACAACAGAC 58 50900131 50900149 CAGGCTGTCTCTGATTGTG 58 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307,ENSRNOT00000086502 3 2 2 102 15 14560246 14565409 ATACATCTGTGGTCTTCGGG 59 14560163 14560181 AGGTATCTCTGTCCCGAGG 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346,ENSRNOT00000025993,ENSRNOT00000090453 2 3 4 84 17 72241143 72247227 CTCTGAACTCTATGGCCGA 59 72247274 72247293 TAGTTCGTGCAGATTAACCC 58 NA Rattus norvegicus 81 Olr1241 ENSRNOG00000050355 ENSRNOT00000074575 2 1 1 60 4 1535626 1535646 ATTACTTCTGTGACATCCCTC 57 1535668 1535686 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr416 ENSRNOG00000029069 ENSRNOT00000049651 3 1 1 60 3 20914210 20914229 TCACCCTCTCCACTATTCCA 60 20914169 20914190 TAGGATAAGCATCAGGACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000071332 2 1 3 117 19 49518636 49518654 CCGTAGGAGCGTCTAAGTG 60 49510927 49518555 TAACATCTTCTTCCCGCCC 60 NA InUTR Rattus norvegicus 81 Pde4c ENSRNOG00000019518 ENSRNOT00000026457 2 1 1 80 16 20447339 20447357 CTCGGACAGTGACCATGAG 60 20446869 20447297 ATGTCTTCTCCATGTAGGTCG 59 NA Rattus norvegicus 81 LOC100362078 ENSRNOG00000024026 ENSRNOT00000032208 2 1 1 87 8 37064738 37069411 CATCCAAGTCCAAGCTACAG 58 37064670 37064688 TCTTGTAGTGCAGTTGCTC 58 NA Rattus norvegicus 81 Rn60_X_0745.2 ENSRNOG00000051072 ENSRNOT00000075871 3 1 1 87 X 73639708 73639727 TCAGGAACAAAGACATTGCT 58 73639593 73639659 TTGCTGATTCTCCTCATCAC 58 NA Rattus norvegicus 81 Mcm7 ENSRNOG00000001349 ENSRNOT00000001825 2 1 1 80 12 19309634 19309652 CCTTATGGGAGATCCTGGT 58 19309463 19309590 GTTGTGTACTGACTTCGGG 58 NA Rattus norvegicus 81 AABR07001657.1 ENSRNOG00000052093 ENSRNOT00000072895 2 1 1 60 1 54853450 54853469 CGAAGGCAAATTGTGTTAGG 58 54853409 54853428 CTTGTAGCTCTTCTGACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Utp3 ENSRNOG00000003599 ENSRNOT00000004787 1 1 1 60 14 21155017 21155039 AGAGTCAGCAAGAAGTAGAAGAG 60 21154979 21154997 TGAATTACCTGTGCCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691931 ENSRNOG00000010875 ENSRNOT00000014510 3 1 1 237 2 232245271 232245289 CTTCTAGGGTTCCCGTCTG 59 232214778 232245070 GTGGTTCTTCAGCATCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Whamm ENSRNOG00000028113 ENSRNOT00000064667 2 1 1 80 1 143419315 143419337 TTGAGATACTGAGGAATGAGGAG 59 143419372 143422472 CAGCTTGTTTCTCTGCTATAAGTC 60 NA Rattus norvegicus 81 Rmi2 ENSRNOG00000021902 ENSRNOT00000033122 2 1 1 89 10 4905348 4910012 GTTCCCAGGAAAGTACGTG 58 4905277 4905296 GAAAGGTCCGTCATCTTCAC 59 NA Rattus norvegicus 81 Camkv ENSRNOG00000058938 ENSRNOT00000090239 3 1 1 80 8 116725104 116725230 ACAAGTCGTCAAGACCGAG 60 116725274 116725292 TTCTTGCAGGTATGCAGCT 60 NA Rattus norvegicus 81 Brms1 ENSRNOG00000047683 ENSRNOT00000072647 1 1 1 80 1 220423500 220423518 GGAGGCAGATGAGAGTGAG 59 220423562 220423685 TCCTCGTCATCCATCTCTG 58 NA Rattus norvegicus 81 Cmc2 ENSRNOG00000011279 ENSRNOT00000014997 1 1 1 80 19 49433663 49438099 GAAGAATGAGTACATGGAGAAGAG 59 49433606 49433624 TCTGGAGGATCAGAAAGCC 59 NA Rattus norvegicus 81 Cmc2 ENSRNOG00000011279 ENSRNOT00000014997 3 1 1 80 19 49433668 49438103 GCTTGAAGAATGAGTACATGGAG 60 49433610 49433628 GAGGATCAGAAAGCCTGCT 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000049910 ENSRNOT00000073109 2 1 1 84 8 37557116 37557765 GCTTCCTACAAGCTCTGAC 58 37557810 37557831 GCTTTACAGGTAGAGTATCCTG 58 NA Rattus norvegicus 81 Mir196b ENSRNOG00000049258 ENSRNOT00000071717 1 1 1 60 4 82199105 82199125 TAGGTAGTTTCCTGTTGTTGG 58 82199065 82199083 TAATGAAGGCAGTGTCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr604 ENSRNOG00000005880 ENSRNOT00000007712 3 1 1 60 3 76135060 76135080 TTACACAGTAGTCATGTCCCA 59 76135020 76135040 CCATGTATAGGATCCCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 2 2 2 80 1 162862544 162865957 ATTGGACAAGGTGCTTCAG 58 162869988 162870008 GTTCATCTGTTTAATGGCCAC 58 NA Rattus norvegicus 81 Gcfc2 ENSRNOG00000006888 ENSRNOT00000009104 2 1 1 80 4 112671479 112671499 GGAAGATGAAAGCCAAGACAC 60 112671538 112676130 AGGTCTATACTTTGTCCCTCTG 59 NA Rattus norvegicus 81 Slc6a19 ENSRNOG00000026501 ENSRNOT00000036714 1 1 1 80 1 32210157 32210509 TTCACACCCAATATCACAGAG 58 32210549 32210569 CAGTGAGAAGGAGTAGAAGAC 57 NA Rattus norvegicus 81 Ero1l ENSRNOG00000006462 ENSRNOT00000009404 2 1 1 80 15 19641611 19641629 GAGACTGTGCTGTCAAACC 59 19639085 19640794 CTTCCTTGGAATACTTGTAGCTC 59 NA Rattus norvegicus 81 Olr1626 ENSRNOG00000012497 ENSRNOT00000016667 1 1 1 60 15 26855353 26855374 AGGAACAAAGATGTGAAAGCAG 60 26855314 26855333 GTCCAGGTTTCAGATAGCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc7 ENSRNOG00000046594 ENSRNOT00000068050 2 1 1 80 10 105165972 105165990 ATGAGGATCCAGCTCTGAG 58 105165686 105165928 TCAGCTCAGACTTCTCCAG 58 NA Rattus norvegicus 81 Lrfn3 ENSRNOG00000020839 ENSRNOT00000028275 3 1 1 80 1 88820048 88823498 CCTCGTTTACAGGATGATCC 58 88819987 88820005 CACAGATCATAGGTACGGC 58 NA Rattus norvegicus 81 Ndst2 ENSRNOG00000027171 ENSRNOT00000035100 1 1 1 80 15 3757137 3757283 TGCTTAATCCGATCAGTGTC 58 3757326 3757344 GGCTCTCAAAGGTGTACAG 58 NA Rattus norvegicus 81 Dnase1l3 ENSRNOG00000009291 ENSRNOT00000012532 1 1 1 80 15 18725545 18725568 ACCTCCGTTAAAGAGATAGATGAG 60 18725603 18729065 GAAGATGAAATTCTCTGCCTTCC 60 NA Rattus norvegicus 81 Cryba2 ENSRNOG00000017996 ENSRNOT00000024283 1 1 1 221 9 82154033 82154244 CACTCACTTGCGACATGAG 59 82153172 82153190 GAATGAACTGCTGTCCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Olr788 ENSRNOG00000031865 ENSRNOT00000046162 2 1 1 60 3 103300812 103300830 CTTGCTTGCCTAGACACTC 58 103300770 103300790 AGATAAATCCACTGTTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000080899 1 1 4 80 5 50231076 50239329 GGAGATGCTAAGAACAAACCTG 59 50231017 50231038 ATGCAGATAACCAATGTAAGCC 59 NA InUTR Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000063807 3 1 2 82 15 24090878 24090901 CTCTGAATAATCCTTACCAAGTGC 60 24090942 24101146 CTACTTCAGCAAAGCGTGG 59 NA Rattus norvegicus 81 Adat1 ENSRNOG00000019434 ENSRNOT00000026309 3 1 1 81 19 44208839 44208860 CAAAGGAAGTTGTCTCAATGGG 60 44206530 44208797 TCATTGAGGATGTCTCCGC 60 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 2 2 2 103 4 117597679 117600449 ATGCCAATGTGATTGTCGA 58 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Rpusd3 ENSRNOG00000009084 ENSRNOT00000068001 2 1 1 81 4 145368324 145368500 CATTGATCTTGCAGTCCCAG 59 145368262 145368280 ATGGAAATGGCTGAGGGTC 60 NA Rattus norvegicus 81 Plekhg3 ENSRNOG00000006570 ENSRNOT00000008573 3 1 1 80 6 99643000 99643271 ATACAGTATCCAGGCCAAGAC 59 99643312 99643331 TGGTGATTCTCCAGGATGAG 59 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000055249,ENSRNOT00000000474 1 2 2 80 1 167069223 167070607 GGAGAAAGTTCCTTCCACCT 59 167070650 167070668 CGAATCTTCCTCTTGGCCT 60 NA Rattus norvegicus 81 AABR07022046.1 ENSRNOG00000023091 ENSRNOT00000031419 3 1 1 60 13 104156271 104156290 GCATTACTGCTTGAAGAGGA 58 104156230 104156252 CCATGATTTATCCAGGTTGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r117 ENSRNOG00000033896 ENSRNOT00000040828 2 1 1 60 4 166987217 166987238 CTAGGAGACATGAAGATGAGAC 58 166987259 166987277 TCCTGAATTTCTGCCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pan2 ENSRNOG00000032441 ENSRNOT00000050792 2 1 1 80 7 2729812 2729831 CTGAAGCGAAGTATTTGCCT 59 2729874 2730054 GGTCTGAATTGTAGGCTGG 58 NA Rattus norvegicus 81 Zbtb17 ENSRNOG00000010436 ENSRNOT00000088644 3 1 1 81 5 160014357 160014375 AGTGACAGCTGATGAGACG 60 160014419 160014515 GGTGTTGGGATCTTCTTCCT 60 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407,ENSRNOT00000015828 1 2 2 80 4 81255951 81256685 TCATGAAATGGAAGGACTCAG 58 81256726 81256745 CGATGACAATCTGAGGACAC 59 NA Rattus norvegicus 81 Slc35f4 ENSRNOG00000014982 ENSRNOT00000020175 3 1 1 80 15 26159232 26166526 CATGGGAGTACGGATCGTC 60 26159170 26159189 TCAGCATGGAAATTATCCGC 59 NA Rattus norvegicus 81 Mir7a-2 ENSRNOG00000035477 ENSRNOT00000053600 1 1 1 81 1 140576407 140576426 CCCTGTCTGGAAGACTAGTG 59 140576470 140576488 ATGTGACCAACACCATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr91 ENSRNOG00000048810 ENSRNOT00000075766 1 1 1 60 1 168447754 168447773 TCTCTGTTTAGCCATTGCTC 58 168447793 168447814 CATAGAACATGAACCAAACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 1 2 2 80 19 44974641 44974659 GGTTTCTGCGCTTCATTCC 60 44974703 44988569 ATAGGCAACCTCCGAACAC 60 NA Rattus norvegicus 81 Haus5 ENSRNOG00000024266 ENSRNOT00000031044 3 1 1 80 1 89122025 89123038 GGACAATCCAAAGATCCTTCG 59 89121965 89121984 TGGTCTAGCTCTTGGTTCTC 59 NA Rattus norvegicus 81 LOC100910893 ENSRNOG00000048609 ENSRNOT00000049527 2 1 1 60 3 77261618 77261637 TATGACGCAGATCTTTGCAG 59 77261657 77261678 GAGAATAAGCACAAAGATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-3556b-1 ENSRNOG00000046712 ENSRNOT00000071875 1 1 1 61 1 38238959 38238980 CATAACCGATTTCAAATGGTGC 59 38238919 38238937 TGACCGATTTCTCCTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-3556b-1 ENSRNOG00000046712 ENSRNOT00000071875 3 1 1 63 1 38238958 38238976 ACCGATTTCAAATGGTGCT 58 38238913 38238931 ACAGGCTGACCGATTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032255.2 ENSRNOG00000031591 ENSRNOT00000042496 1 1 1 81 18 56965600 56965619 GGTGATATTCCTGGAGTCCG 60 56965660 56965682 CTTTCCTTCTGCCTTTGTACAG 60 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848,ENSRNOT00000008503 1 2 2 80 X 135312296 135312317 CCCAATGCAATTGTACAATCAG 59 135311676 135312256 AGTTTCTACCTTCCTTCCGT 58 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 3 2 2 80 19 39386430 39389317 AATTCATGCCAAAGTTCCTGG 60 39389357 39389377 GAAGTGACGATACAGGAAACC 59 NA Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 3 2 2 80 12 19623630 19625350 CCTAAAGCAGCTCTACACAG 58 19625392 19625411 CTCATCTCAATGAAGGCTGG 59 NA Rattus norvegicus 81 Calhm1 ENSRNOG00000030682 ENSRNOT00000044519 2 1 1 103 1 266918527 266918545 ATCTACGATGGGAACTGGC 59 266916769 266916787 AGTAATGTGGTCAGCAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Slitrk1 ENSRNOG00000009209 ENSRNOT00000012195 3 1 1 60 15 93305025 93305043 TGATGAGCGACCTCAAGTG 60 93304983 93305001 AGCAGCATGAAATCCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006,ENSRNOT00000061279 1 2 2 84 7 10999297 11001595 CCTCACTCAGGAGCATCAG 60 10999231 10999250 CAAGAGGTTGTTCAGTTCCC 59 NA Rattus norvegicus 81 Aida ENSRNOG00000058805 ENSRNOT00000089309 1 1 1 80 13 101715345 101715366 TTGAAGAAGATGAAGAAGGTGG 58 101715406 101718143 GTGGCAATAAAGTACCAGGA 58 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 3 2 2 86 1 2005659 2005678 TCTGAGGTCAATGAGATGGA 58 2005389 2005612 TTCTTCGAGTGAAGGTATCTG 57 NA Rattus norvegicus 81 Cyp3a2 ENSRNOG00000000978 ENSRNOT00000076813 3 1 1 96 12 11677302 11677690 TCTCTACCGACTTGGAACC 58 11677224 11677242 GTAATTCAGCACAGTGCCT 58 NA Rattus norvegicus 81 LOC100909594 ENSRNOG00000046558 ENSRNOT00000074363 1 1 1 60 3 159095919 159095937 TAGTGACAGGAGCCATTGG 59 159096421 159096439 ACAACTTCTTCCGACTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Eif2b2 ENSRNOG00000006467 ENSRNOT00000008730 1 1 1 80 6 109049356 109050739 CACAGAAGGAGACATTCTGG 58 109050781 109050800 AAGAGGGTAATGAGGTCAGG 59 NA Rattus norvegicus 81 Prdx5 ENSRNOG00000021125 ENSRNOT00000028687 3 1 1 91 1 222165403 222165757 CTGTTCCAAGACCCATCTG 58 222165330 222165349 CATTAACACTCAGACAGGCC 59 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203,ENSRNOT00000025217 1 2 2 80 18 70970769 70971073 TGTTCACTTTAAGAACACCCG 59 70971114 70971133 TCCTTCAGATACTTGGTGGC 60 NA Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 2 1 1 60 15 19196491 19197508 TGTTCCCTGCCTTTAATTGTC 59 19197915 19197933 TATTCTCACTGAAGCAGCC 57 NA DesignNoJunction Rattus norvegicus 81 Anapc13 ENSRNOG00000008459 ENSRNOT00000011203 1 1 1 80 8 111111073 111111093 CTTGGATCTTATTGACGACGC 60 111111135 111115351 TCAGGAAGCTCACTCAGTG 59 NA Rattus norvegicus 81 St6galnac2 ENSRNOG00000012083 ENSRNOT00000016622 2 1 1 80 10 105656514 105656535 GATTACCTGATGCTGAGATCTG 59 105654626 105656473 ATAGATGTGAGGCCTGTCC 59 NA Rattus norvegicus 81 Tmem260 ENSRNOG00000013353 ENSRNOT00000017871 3 1 1 80 15 25331773 25333235 TGTTTACCTAGAAAGGACAGAC 58 25333274 25333294 GAAGAATAACGAGTACACGCA 59 NA Rattus norvegicus 81 Narf ENSRNOG00000036664 ENSRNOT00000054920 3 1 1 80 10 110460155 110460174 ATCATGAAGCTCAAGAAGGG 58 110460216 110461931 TCTGCCATTTAAGCATCCTC 58 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 1 2 2 94 12 11779841 11779859 GAGTTCAGAGCTTAGGCCC 60 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA Rattus norvegicus 81 Htr3a ENSRNOG00000006595 ENSRNOT00000008965 3 1 1 80 8 53213597 53213943 GAAATGAAGTTCTACGTGGTC 57 53213537 53213555 CATGAGGAAGATACTGGGC 57 NA Rattus norvegicus 81 AABR07061336.1 ENSRNOG00000028235 ENSRNOT00000031768 2 1 1 99 4 116933637 116933655 TGTTGAGGAACCCAGTGTG 60 116935916 116935934 CAACTCTGGGTCCATGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000015778 3 1 2 166 15 24267403 24267423 TAGCCAAACAAATGGGTTTCG 60 24267551 24332206 CATAACAGATGCCCTGTGC 59 NA InUTR Rattus norvegicus 81 Dnaaf2 ENSRNOG00000028155 ENSRNOT00000059187 2 1 1 81 6 91482775 91485641 CAGATCCATGCGAAGTTGC 60 91482712 91482733 GAGGACATTCTTCTTTGACTCC 59 NA Rattus norvegicus 81 Rab7b ENSRNOG00000039754 ENSRNOT00000009280 3 1 1 80 13 48466181 48474080 CTGGAAGATAGGAAGGTGC 57 48474122 48474142 CGCACTAACTTCAAAGTATGG 57 NA Rattus norvegicus 81 Aldh1l2 ENSRNOG00000008586 ENSRNOT00000059639 2 1 1 80 7 26393235 26395449 TAGACGGACAGATGGTGAC 59 26395491 26395511 CTCTAATGTCCAGTGGTTCTC 58 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601,ENSRNOT00000084628 3 2 2 82 1 53183022 53186121 CAATTCTGGAAACATGAATGGG 58 53186163 53186182 CCAAAGTACTTCCTCTCGGA 59 NA Rattus norvegicus 81 Mad2l1 ENSRNOG00000005376 ENSRNOT00000007285 2 1 1 82 4 97535888 97535908 TCATTCACTACCACAATCCAC 58 97535950 97536411 TCAAATGAACCGTCTCTTCAG 58 NA InUTR Rattus norvegicus 81 Rgs7 ENSRNOG00000021984 ENSRNOT00000065041 1 1 1 80 13 93158632 93158757 CAAGCTAAAGTGGACAAGAAGAG 60 93158574 93158592 GTGGACATCCCAGAATGCT 60 NA Rattus norvegicus 81 Ppp1r9a ENSRNOG00000008869 ENSRNOT00000011756 3 1 1 80 4 30240045 30240064 TGTCTGAATTCAGTGCTCAG 58 30240107 30241389 TCATTCCAAGAGCCTTCAG 57 NA Rattus norvegicus 81 Iqsec3 ENSRNOG00000014083 ENSRNOT00000018902 1 1 1 80 4 153959456 153959474 AGAAGTTCGTGGAAGACCT 58 153957156 153959414 TCTCCAGTTCCCATTCTATCC 59 NA Rattus norvegicus 81 Utp14a ENSRNOG00000005012 ENSRNOT00000048022 1 1 1 80 X 135112674 135112695 AACCTCCTGACTACAAGAACTC 60 135112733 135113501 CTTCACTTCATCATCCAACTCC 59 NA Rattus norvegicus 81 Scaf1 ENSRNOG00000056946 ENSRNOT00000081430 2 1 1 80 1 100998369 100999839 ACTGACAAGTATCTGAAGAAGC 58 100998310 100998329 CTGGTAGTATGGCTTGATGG 58 NA Rattus norvegicus 81 Alkbh1 ENSRNOG00000012264 ENSRNOT00000016389 3 1 1 80 6 111459221 111461327 CTGTCCTTCAGCTTTGGAC 59 111459159 111459178 CATAAACATGGCTGTGGGAG 59 NA Rattus norvegicus 81 AABR07054721.1 ENSRNOG00000048632 ENSRNOT00000049457 3 1 1 60 3 167759222 167759241 CTTGACTAAGGAAGAGTGGG 57 167759181 167759204 CACATCTTTGTAGAGACTCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabin1 ENSRNOG00000001237 ENSRNOT00000001659 3 1 1 80 20 13857215 13857233 CAAACTGGAGAGCTTCTCG 58 13857277 13858018 TCCTGCTTCTCAGATTCCA 58 NA Rattus norvegicus 81 LOC103689945 ENSRNOG00000056617 ENSRNOT00000081997 3 1 1 80 15 4015330 4015452 TTATGAGGAAGATGCTGACGA 59 4015270 4015288 TCATCCTCCTCTCCAACTG 58 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000087638 1 1 5 60 20 3404945 3404964 ACGTACACATTAAGACAGGG 57 3404904 3404928 CTCCCTAGTGTTAAGATTAAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tat ENSRNOG00000016348 ENSRNOT00000022721 2 1 1 80 19 41682493 41682511 CTACCTATCCAGTCGGGAG 58 41681187 41682451 GTCAGAATGACATCCTTAGCT 58 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119,ENSRNOT00000075512 2 2 2 80 11 82703821 82703840 TGTGAGGAATCAGACATGTG 58 82704456 82713998 AAGAGGAAAGCAATTCTAGGG 58 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000075862 3 1 4 74 X 70460283 70460303 TGTTCTTGTCTTTCAGTTGGG 59 70459702 70460247 ACCTTGGAGATGAAGATGC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rufy4 ENSRNOG00000032991 ENSRNOT00000083595 1 1 1 80 9 81414885 81414906 GTATGAGAAGGAGCTTGAAGGA 60 81414945 81420177 TCCTTCTCCTGAATCAGTTCC 59 NA Rattus norvegicus 81 C1ql1 ENSRNOG00000002963 ENSRNOT00000003986 1 1 1 62 10 91046585 91046603 CAGATCTCTGCAAGAACGG 58 91040604 91040622 AGTTCTGGTCAGCATCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Ptma ENSRNOG00000018584 ENSRNOT00000025093 3 1 1 84 9 93548203 93548443 GAAGAAGGTGATGGTGAGGA 59 93548490 93548508 CATCATCCTCAGCTACCCG 60 NA Rattus norvegicus 81 LOC690617 ENSRNOG00000039861 ENSRNOT00000061194 2 1 1 94 7 11216548 11216566 GATACCTCCGCAGTACCTC 59 11216624 11216913 TCCTGTTGACCACGAACTC 60 NA Rattus norvegicus 81 Olr1401 ENSRNOG00000033524 ENSRNOT00000043954 1 1 1 60 10 34805261 34805279 CCCACTACACTACACAACC 58 34805303 34805321 GGAGAACACAACCAATGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scg2 ENSRNOG00000015055 ENSRNOT00000020219 3 1 1 80 9 85238716 85238857 CCTACTTGAGAAGGAATTTGCA 59 85238657 85238676 CCAACCCATTTGGTTTCTCC 60 NA Rattus norvegicus 81 Rps3a ENSRNOG00000011893 ENSRNOT00000016329 3 1 1 80 2 185443627 185443646 GTCTGACTAACTTCCATGGC 58 185441677 185443584 CTTCAATCATGGTCTGCCA 58 NA Rattus norvegicus 81 Med21 ENSRNOG00000001820 ENSRNOT00000002500 2 1 1 92 4 180966265 180966956 TACAGAAGAGTATGCCCAGC 59 180967010 180967029 GACTCTTCACTGGGTAAGGA 59 NA Rattus norvegicus 81 Nlrp14 ENSRNOG00000023847 ENSRNOT00000051854 2 1 1 80 1 171326728 171326749 AGGAGACAATGGAGTAAAGACC 60 171326790 171328938 CAGGATTCCAACCTCAGCA 60 NA Rattus norvegicus 81 Pla2g15 ENSRNOG00000019859 ENSRNOT00000026996 3 1 1 81 19 38141732 38141750 TAGATGTGCGTGTTCCTGG 60 38141794 38142047 AAATAGGAACCCACGTTCCT 59 NA Rattus norvegicus 81 Zbtb37 ENSRNOG00000026907 ENSRNOT00000039082 2 1 1 80 13 78847224 78849153 GGTCGACAGATTTAGTCCCT 59 78847163 78847181 ATTCTCCCAGGAGACTCAC 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 2 4 4 80 7 142044287 142046420 CGTCAGTATCCCAAGGTCC 60 142044225 142044245 GACTTCCTGCATATCAGAACC 59 NA Rattus norvegicus 81 Muc1 ENSRNOG00000020539 ENSRNOT00000027850 1 1 1 80 2 188545751 188545769 AAGTGAAGTCACAGCTCGT 59 188545810 188545941 TCTCATTCACATTGACTTCCGA 60 NA Rattus norvegicus 81 Zdhhc7 ENSRNOG00000017342 ENSRNOT00000023405 2 1 1 80 19 52734757 52735259 CAATGACGAAACTGAGATCGAG 60 52734698 52734716 GACTTCATCCCTTCCCACC 60 NA Rattus norvegicus 81 Skp2 ENSRNOG00000059059 ENSRNOT00000089178 3 1 1 81 2 58517051 58517069 GACTGAACCTTTGTGGGTG 59 58516177 58517006 AGTTCATCCAGTCTGGAGC 59 NA Rattus norvegicus 81 Rpe ENSRNOG00000038085 ENSRNOT00000079912 3 1 1 82 9 73707445 73707842 GAATGGGATGAAGGTTGGC 59 73707882 73707906 CCATATCTATTTGATTAGCCCATGG 60 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 2 5 5 81 8 73120149 73121286 CAGAGATTAGCCCAGGTGG 60 73120086 73120104 CCACATCCTTCTGACCAGG 60 NA Rattus norvegicus 81 Rab33a ENSRNOG00000006698 ENSRNOT00000008868 2 1 1 80 X 135349203 135359633 AAGATCAAGGTTCAGGTGTG 58 135359674 135359694 CACATTGCGGTAATAATGCTC 58 NA Rattus norvegicus 81 Cldn16 ENSRNOG00000055138 ENSRNOT00000083319 2 1 1 83 11 77684546 77685668 TCTTCAAAGATGTTGGACCTG 58 77684483 77684501 ATTTGGCCATGGAAACACC 59 NA Rattus norvegicus 81 Slc25a14 ENSRNOG00000006871 ENSRNOT00000009637 3 1 1 80 X 135481159 135483264 GTAGAACGTTTGGAAGATGAGAC 60 135483299 135483322 GGCAATAGTAGATGAAATCACTCC 60 NA Rattus norvegicus 81 Hif3a ENSRNOG00000017198 ENSRNOT00000023490 2 1 1 80 1 78981195 78982941 CTAGATATAGCTCAGGACCCT 57 78981135 78981153 GAGCTGGAAGTCATCATCC 58 NA Rattus norvegicus 81 RGD1565693 ENSRNOG00000012652 ENSRNOT00000016884 3 1 1 72 6 111570910 111570929 TCTTGGACAAATGTCTGCAG 59 111570788 111570806 GAGTTCCAGAAGGAGGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 3 2 2 80 7 142112274 142112292 GACATCCTGGCTCTCAGAG 59 142112334 142112443 CAAGGCTCTCATTTGAGAAGC 60 NA Rattus norvegicus 81 AABR07061382.1 ENSRNOG00000034129 ENSRNOT00000046568 2 1 1 60 4 120157414 120157435 GATGACATCACTGACTTGAACC 59 120157375 120157394 CATCTACTTCCTTTGGTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam175b ENSRNOG00000017222 ENSRNOT00000023214 3 1 1 80 1 204880181 204883074 AGGAGAAAGTACAGGCAGTG 60 204883115 204883135 ATTTGTTCACTTCTGCCTGAC 59 NA Rattus norvegicus 81 Gopc ENSRNOG00000000408 ENSRNOT00000057476 1 1 1 80 20 33488775 33488793 CCAGGCTGAAGTTTATGGG 58 33487728 33488733 AACTGTATTTGTTGGACCCTG 59 NA Rattus norvegicus 81 Tcof1 ENSRNOG00000026108 ENSRNOT00000045041 2 1 1 80 18 56115532 56115551 TACCATCATCTGTTGCAAGC 59 56112692 56115490 AGTCAGGAAATTCTTCTGGC 58 NA Rattus norvegicus 81 Tbcb ENSRNOG00000020781 ENSRNOT00000028211 1 1 1 80 1 91043370 91043390 TCTACAGCAAGTTGGATCAGG 60 91043431 91046323 GGTCAATGACATGGATTCGG 59 NA Rattus norvegicus 81 Wrap73 ENSRNOG00000014805 ENSRNOT00000019873 1 1 1 80 5 171453405 171454129 GAGATCTTCAGATCCCAGGAG 59 171454269 171454287 AGCATCCCTACACCATTCC 59 NA Rattus norvegicus 81 Tril ENSRNOG00000026941 ENSRNOT00000036951 3 1 1 60 4 83972087 83972106 TCTGCAGTACAACCAGATCC 60 83972046 83972064 TAGTCTGGAGAGCTTCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tacr2 ENSRNOG00000050658 ENSRNOT00000071394 2 1 1 82 20 31900743 31901544 AGAAGAAGTTTGTGAAGGCC 58 31901588 31901607 CAGGATGAAGTAGAGGTGGT 59 NA Rattus norvegicus 81 March5 ENSRNOG00000017396 ENSRNOT00000023562 3 1 1 80 1 255861408 255861575 CAGTATATTTCCAGGGATTGGT 58 255861615 255861634 GTAGCAGAGACATGATCTGC 58 NA Rattus norvegicus 81 Lmf1 ENSRNOG00000000230 ENSRNOT00000000246 1 1 1 80 10 15025340 15025358 CAAGCAGGTCATGAACACC 59 15025400 15025568 CGTTCTTTGGTGATACTTCCG 59 NA Rattus norvegicus 81 Gal3st3 ENSRNOG00000028743 ENSRNOT00000039842 2 1 1 61 1 220672513 220672531 GTAAGCCTCCTCATCCACC 60 220676508 220676526 CTCAGAGGGAACAACTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794 1 1 2 80 20 30969558 30970126 AGGATGCGATCAAGGAGTG 60 30969496 30969514 ACACAAAGTCCTCCTCAGC 60 NA Rattus norvegicus 81 Smyd1 ENSRNOG00000006776 ENSRNOT00000009184 3 1 1 80 4 99077823 99077841 AGTCCTCTCCTACCTCCAG 59 99076319 99077781 TGGTAGAGTTTCATGTAGCCA 59 NA Rattus norvegicus 81 Pgs1 ENSRNOG00000002949 ENSRNOT00000004007 2 1 1 80 10 107008116 107009761 CAGGAACTGGTGGATTGTC 58 107009805 107009823 AATGGAGACCTTGAGGTCG 59 NA Rattus norvegicus 81 Pgs1 ENSRNOG00000002949 ENSRNOT00000004007 3 1 1 80 10 107009782 107009801 TCACTACAAGCGAAGTTTCC 58 107009843 107010505 GTTCTTCCTACCTCTTGAGC 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 3 2 2 80 3 79257480 79257501 GTTTACCTAAATATGCAGCGGA 59 79254704 79257442 GAGAAATATCATAGGGCAGGAC 58 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 1 2 2 80 2 104050104 104050733 GGCATTTGGTTCTACAGATGG 59 104050044 104050063 TCCACTGCTTGCTTAATTCC 59 NA Rattus norvegicus 81 Cd48 ENSRNOG00000004737 ENSRNOT00000006306 2 1 1 80 13 90131449 90134242 CATGGAAGTATACGATCTTGTGTC 60 90134281 90134299 CTCAGGTGACAGGAGTCAG 59 NA Rattus norvegicus 81 Aldh3a1 ENSRNOG00000002331 ENSRNOT00000003182 2 1 1 80 10 47497815 47497833 GGTCAAAGGCCTGATTGAC 59 47497875 47498547 ATGGTTGGAGCTATGTATCGT 59 NA Rattus norvegicus 81 Olr312 ENSRNOG00000050629 ENSRNOT00000072701 3 1 1 60 1 213405050 213405071 ATCTTATAGCTGCATCATTGCC 59 213405091 213405110 TTTCTTCTTGCCTTCAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 3 2 2 80 4 163393744 163395474 TATCACCCAACGAGTTAACAC 58 163393684 163393702 CTGTGTAGGCCTTAAAGCT 57 NA Rattus norvegicus 81 Olr562 ENSRNOG00000037834 ENSRNOT00000057479 1 1 1 60 3 75465840 75465858 TCTCAATTGGTGATTGGCT 57 75465882 75465900 GTGATGTCTGCCCTATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfr2 ENSRNOG00000020416 ENSRNOT00000061132 1 1 1 80 7 11342105 11342126 TTCAATGATAGGAATGCCAGAG 58 11341440 11342066 TGTAGGGTCAACTTTCTTCCT 59 NA Rattus norvegicus 81 Cxcr2 ENSRNOG00000014269 ENSRNOT00000019109 2 1 1 88 9 81427829 81432905 GCTACAGCAGGATTAAGTTTACC 60 81432948 81432971 GTCAATATCTCCACTGAAGAAGTC 59 NA InUTR Rattus norvegicus 81 Gphb5 ENSRNOG00000021885 ENSRNOT00000031076 2 1 1 106 6 98382928 98382946 GTGCTGTGAGGGAATTCAC 59 98380680 98382858 AATGGGTTTCTCCCAGGTC 59 NA Rattus norvegicus 81 Olr1240 ENSRNOG00000049725 ENSRNOT00000074752 1 1 1 60 4 1521716 1521736 ACACAGGATGTATGCTAAGAC 58 1521756 1521776 CAGAAGTAATGGTTGATGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a13 ENSRNOG00000009957 ENSRNOT00000013817 3 1 1 80 4 31691440 31718689 CCAAAGATGGGTTAATATCCTTCC 59 31691383 31691402 CCACCATAAACAAGGCATCC 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000037086 1 1 3 80 1 79030509 79030527 CAGATGGAGGCATCCTCTG 60 79030571 79032210 GGTTAGAAGGGAGGCTGTG 60 NA Rattus norvegicus 81 Inpp5d ENSRNOG00000017020 ENSRNOT00000051338 3 1 1 80 9 94830745 94830766 CACCTATCGATTTGAAAGACTG 57 94830806 94832593 GGCAAATTGTACTTCATCCC 57 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 3 1 2 61 15 28023066 28034119 TTTGCACTTTCTAGGTGACG 59 28034142 28034161 CAACAAGAGCAGAAGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000079750,ENSRNOT00000039998 3 2 2 65 20 3689765 3689783 AAACCTCCTGGCTCTTCTG 59 3689718 3689736 GATCTCTAACCTGGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rprm ENSRNOG00000005109 ENSRNOT00000006784 2 1 1 60 3 39596256 39596275 CTTCTTCCTTGGCTGTAACC 59 39596215 39596237 CTTCACTAGGAAGTTGATCATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000078153 3 1 3 106 1 100599242 100601337 AACCAACAGGGCAGTAGAC 60 100601407 100601425 TGTCTTCTGGAGACATGGC 59 NA Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576,ENSRNOT00000013546 1 3 3 80 3 11239330 11239348 GGGATCACCACATCCAGAG 60 11239392 11239587 CAGACTCCATCTTCAGCGT 60 NA Rattus norvegicus 81 Arhgef18 ENSRNOG00000028090 ENSRNOT00000066281 3 1 1 80 12 1975501 1975519 AGTTCCTAGAGGAGGACAG 57 1975563 1976918 TTTCTCCTGAGAACTGCTG 57 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000066899 3 1 2 90 10 85629290 85630165 TAAGAATCAGTCTTCCCTGTG 57 85630217 85630235 TTTCTCATCCCAACCACAC 58 NA Rattus norvegicus 81 Meis3 ENSRNOG00000021390 ENSRNOT00000039538,ENSRNOT00000068406 3 2 2 80 1 78077486 78078070 AGTCTAATCGTACAGGGCA 58 78078113 78078132 CATGTGGTTGAGTCTCTGTG 59 NA Rattus norvegicus 81 AABR07017693.1 ENSRNOG00000052828 ENSRNOT00000060399 2 1 1 80 15 30147484 30147756 TCCAATTAAACTGGGTGAGC 58 30147423 30147441 AAGCTATGGATCCCTCTGG 58 NA Rattus norvegicus 81 Akr1c14 ENSRNOG00000017672 ENSRNOT00000023835 3 1 1 82 17 69827031 69827051 GCGTGTAGCACTAAATGATGG 60 69822094 69826990 CTTCATCCTTAGCAACCTTCTC 59 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 1 2 2 80 6 122949283 122953089 GTTACTACAGGTTAGGAATGTACC 59 122953125 122953146 ATGTATCTACCATTTCCTGCTG 58 NA Rattus norvegicus 81 Ppm1d ENSRNOG00000003329 ENSRNOT00000004540 2 1 1 80 10 72924849 72924867 GACACAAGATCACAAGCCA 58 72924909 72931330 CCAGACTTGTTCATCACACTC 59 NA Rattus norvegicus 81 Edn3 ENSRNOG00000007477 ENSRNOT00000009826 2 1 1 80 3 172857697 172857718 TGCTTCACTTATAAGGACAAGG 58 172857759 172875982 CACAGTCTGTTCAGGAGTG 58 NA Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 3 2 2 82 9 80154621 80155297 TCTACAAGAGAAAGCAGTGCA 60 80154559 80154579 CAGCTTCATCCCATACTTGTC 59 NA Rattus norvegicus 81 Tas2r135 ENSRNOG00000026811 ENSRNOT00000031921 1 1 1 60 4 71795781 71795799 TGTCCACAGGAGAAACGAG 59 71795818 71795841 GTCTTATCAGTAATCTGACATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1589 ENSRNOG00000022387 ENSRNOT00000030794 2 1 1 60 13 92167792 92167810 CCTGGACTCTCGACTTCAC 60 92167831 92167852 CTCCAAGAAGGAAAGAATGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd2 ENSRNOG00000001719 ENSRNOT00000002358 2 1 1 80 11 83943739 83943758 TCAAATTTCTGCGTCCACAC 60 83942647 83943698 CAGCAAAGCACTTATTCTCCC 60 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 3 2 2 80 6 26568114 26568134 GAGTGAGAACTCATCTGATCC 58 26568176 26569879 TGTGGTTTCTGTTTCCCTG 58 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534,ENSRNOT00000082332 3 2 2 85 10 8441224 8441242 CCTCCGACAAATGTTTGGC 60 8427560 8433896 CGAAACCAAATCCCTTCGAG 59 NA Rattus norvegicus 81 Olr414 ENSRNOG00000033799 ENSRNOT00000052047 3 1 1 60 3 20882796 20882817 TTCTCACTAACATAGTTGCCCT 59 20882757 20882775 ACACAGAAGGACAGTCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hddc3 ENSRNOG00000012236 ENSRNOT00000016445 1 1 1 80 1 142137209 142137227 GGCCAAACTAGTGAAGCTG 59 142137270 142137596 TGTTCTGACCAGCCTTTAGG 60 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 2 3 3 92 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085531 83085549 AATTGCCACTCTCGATCCA 59 NA Rattus norvegicus 81 Glb1l2 ENSRNOG00000007561 ENSRNOT00000037790 3 1 1 80 8 27812095 27812686 TGTTACCAGCTATGACTACGA 58 27812035 27812054 AAGAGTTCTCGAAGCTTGGT 59 NA Rattus norvegicus 81 LOC100911282 ENSRNOG00000047274 ENSRNOT00000060298 3 1 1 81 15 29672357 29672547 GATTTGCTGGGTGAGAGGA 59 29672294 29672314 TCTCAGAACAGAACTGGTTCC 60 NA Rattus norvegicus 81 Ccdc37 ENSRNOG00000017959 ENSRNOT00000024222 2 1 1 80 4 122323761 122324027 ATGAGACTGGCTGAGAAAGAG 60 122323701 122323719 GCTCGTGATTTGAGCTGTG 60 NA Rattus norvegicus 81 Aes ENSRNOG00000052025 ENSRNOT00000092061 3 1 1 81 7 11014737 11015288 GGCATTACGTCATGTACTATGAG 59 11014525 11014546 TTCAGCCTCTTCACAATTTCAG 59 NA Rattus norvegicus 81 Olr286 ENSRNOG00000018955 ENSRNOT00000025611 2 1 1 60 1 212632464 212632484 TGGTATCTGTGATTTACTCGG 57 212632424 212632443 CTCAGGCAGTAGATTATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000091212 2 1 2 88 3 173956694 173956712 GAAGATGATGAGCAGCCCT 60 173956762 173959480 GAGCCAGCATTTATACTGCTG 60 NA InUTR Rattus norvegicus 81 Emc6 ENSRNOG00000019352 ENSRNOT00000026168 3 1 1 60 10 59742825 59742845 TCTACGGCTTCATCTTCTACC 59 59742785 59742804 TTGAGAATTAGGAGCAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 3 2 2 80 17 77686404 77686424 CGCTAATCAAGTCTATCTGGG 58 77680013 77686363 GGATCTTGGACTTACTCTGC 58 NA Rattus norvegicus 81 Prr27 ENSRNOG00000023342 ENSRNOT00000036314 1 1 1 80 14 21886393 21889804 TCATTCACAAGAAATCGCCC 59 21884946 21884970 GGATATTCAGAGATGGTTTAAGTGG 60 NA Rattus norvegicus 81 Cabs1 ENSRNOG00000001950 ENSRNOT00000002670 2 1 1 199 14 21747164 21747187 CTCAAAGAAGAACCAGATGAACTC 60 21746398 21746420 GCTAACCAACTGTCTAAGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vezf1 ENSRNOG00000009819 ENSRNOT00000055705 2 1 1 83 10 75371873 75373509 CTTCAAATGCCAAACGTGC 59 75373556 75373574 GATACCTTGCCTTCATGGC 59 NA Rattus norvegicus 81 LOC100360002 ENSRNOG00000042869 ENSRNOT00000064931 1 1 1 60 10 89187371 89187391 CAACTCTTATACCCTCACAGG 58 89187331 89187349 AGCAATGCCTCCATATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lactb ENSRNOG00000018081 ENSRNOT00000024452 1 1 1 80 8 72762051 72765536 AGTCTGGTCAGAAGGTTTAGG 59 72761991 72762010 CTTGCAATTCTCATGACCGT 59 NA Rattus norvegicus 81 RGD1565166 ENSRNOG00000021796 ENSRNOT00000032495 2 1 1 85 10 10563480 10563884 AACTGTTCGAAGATGGCTG 58 10563931 10563951 GTATTCTGCCAGGATGTAGAG 58 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902,ENSRNOT00000080950 3 2 2 80 6 124398159 124399863 CCTTCACTGGTTGGAAGAG 58 124398097 124398115 TTGGCCTTGAATTCTGACG 59 NA Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 3 1 1 91 15 30751526 30751604 AAGAAGGAGCAATGGAGAC 57 30751659 30751677 TCTGGTAGGTGCAGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07029925.1 ENSRNOG00000052636 ENSRNOT00000085543 2 1 1 80 10 60231164 60235661 CATCCTCATTCTATTGGACTCC 58 60235702 60235720 AAGCAGAGGTCAGAGAAGG 59 NA Rattus norvegicus 81 RGD1561252 ENSRNOG00000009530 ENSRNOT00000012842 3 1 1 80 15 86166382 86166778 GATGCACTTTGAATCAGGGTC 60 86166819 86166838 TGTCTGGCTCTTTCTTCAGG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860,ENSRNOT00000008857,ENSRNOT00000085647 1 3 3 80 3 117472366 117472388 GAGATTGGTGTAGTCATAGTCAG 58 117472425 117480827 TTTCTCCAGTTCATCTTGTACC 58 NA Rattus norvegicus 81 N4bp2l1 ENSRNOG00000059322 ENSRNOT00000085295 2 1 1 90 12 548336 549518 GAGTTAGCAAGAAGAAACATCC 58 548267 548288 CACTGTGAAAGGTAACATTGTG 58 NA Rattus norvegicus 81 Gpatch2 ENSRNOG00000002512 ENSRNOT00000040543 2 1 1 82 13 105700841 105700861 CAAGCTCATGAGTGGAAACTC 59 105700905 105701195 TCTGCTCATCGTCACTGTG 60 NA Rattus norvegicus 81 LOC682905 ENSRNOG00000004661 ENSRNOT00000006169 1 1 1 80 18 86279508 86279557 CTCGCCAGAGTTATCAGAC 58 86279446 86279464 CTTGGTGGTGATCTTGGAG 58 NA Rattus norvegicus 81 LOC682905 ENSRNOG00000004661 ENSRNOT00000006169 2 1 1 80 18 86279507 86279556 TCGCCAGAGTTATCAGACC 59 86279445 86279463 CCTTGGTGGTGATCTTGGA 59 NA Rattus norvegicus 81 Mafb ENSRNOG00000016037 ENSRNOT00000021452 1 1 1 60 3 156340634 156340654 ACTGAACAGAAGACCCATCTC 60 156340594 156340613 TCATCTGCTGGTAGTTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mesdc2 ENSRNOG00000012366 ENSRNOT00000055583 1 1 1 80 1 146041000 146041019 AGGAGACAGAGGAAATCACC 59 146041062 146041786 ATCCCACGATGAACCTCTG 59 NA Rattus norvegicus 81 Rn60_4_1361.1 ENSRNOG00000059669 ENSRNOT00000082539 2 1 1 80 4 71241937 71242761 TAGAGACATATCTGCAGCTCC 59 71241877 71241898 GAACAATGGTTTGGTATTCAGC 59 NA Rattus norvegicus 81 Nfatc2ip ENSRNOG00000057384 ENSRNOT00000090200 1 1 1 80 1 197786217 197788333 CTATCTCCTGATTCTCCTCTTAAGG 60 197786161 197786179 GAAGGAGAGCTTGTGTCCA 59 NA Rattus norvegicus 81 AABR07034730.3 ENSRNOG00000057165 ENSRNOT00000038646 2 1 1 80 11 85508367 85508507 ACTTAACAGGGTCATGTGC 58 85508551 85508569 ACAGTTTGACTGTGCTTCC 58 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 2 2 2 80 5 147825161 147825180 CGTCTATGAGATGGAGGGAG 59 147824993 147825119 CATTCTTTCCCAAAGGCCTG 60 NA Rattus norvegicus 81 Olr550 ENSRNOG00000048383 ENSRNOT00000051768 1 1 1 60 3 74997411 74997429 TTGCCATCCTGAGAATCCG 60 74997369 74997387 GAGGCACAAGTTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl7a ENSRNOG00000049097 ENSRNOT00000006754 2 1 1 88 3 4869035 4869053 TCATCAAGGGAAAGGCCAG 60 4869104 4869336 CTTGTCTTCCGAGTTCACCT 60 NA Rattus norvegicus 81 Olr811 ENSRNOG00000005403 ENSRNOT00000007157 2 1 1 60 4 72428867 72428885 CCATCTTCTACTCAGCCAC 57 72428909 72428927 TTGAAGGCATGGATAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428,ENSRNOT00000065187 3 2 2 82 1 199198676 199198697 GGAGAAATTTAGTTTGAGCCTC 58 199198740 199198889 CAGCCTTTCCCATCTTCAG 58 NA Rattus norvegicus 81 Fam69c ENSRNOG00000015448 ENSRNOT00000020858 3 1 1 98 18 81587158 81587177 GACTGCAATTTCTTCGACTG 58 81587237 81590683 TTTATCACAGATGACCTGCA 57 NA Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 1 2 2 80 X 114992186 114992208 CTTTGTACAGGAATACAGATCGG 59 114992244 114998949 CAATGCTTCTTAGCTTCTCTAGG 59 NA Rattus norvegicus 81 Zfp13 ENSRNOG00000003455 ENSRNOT00000004589 3 1 1 168 10 12909931 12912736 GGCTTTGGAAGTTTATCTTCAG 58 12909784 12909802 TGTTGACCATACTTCGGGT 59 NA Rattus norvegicus 81 Cyp2d5 ENSRNOG00000029128 ENSRNOT00000046024 2 1 1 80 7 123619782 123620905 TGTACAAGCTTCAACACCG 58 123619720 123619739 TCAGTCTGTTGACAATGACC 58 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000065601,ENSRNOT00000055103 1 2 2 80 1 188311309 188311327 TTCTACTCCATGTTCCGCC 60 188311368 188314220 AAAGATGTTTCGGATCAAGAGG 59 NA Rattus norvegicus 81 Rnase2 ENSRNOG00000032133 ENSRNOT00000050820 1 1 1 68 15 28155273 28155291 TGATTTCCAGGACAGCCAG 60 28155063 28155241 TTCACACCCATGTTTCCCA 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Stmn2 ENSRNOG00000011705 ENSRNOT00000015720 2 1 1 80 2 95443545 95443563 ATGCTGTCACTGATCTGCT 59 95439714 95443502 CTTCACCTCCATGTCATCGT 60 NA Rattus norvegicus 81 Bhlhe22 ENSRNOG00000021745 ENSRNOT00000033940 1 1 1 60 2 102686684 102686702 CTACATCCTCATGCAGGCA 60 102686726 102686744 GTTGAGGTAGGCGACTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000058296 3 3 5 99 18 79424930 79426828 AAGAACATTGTGACACCTCG 59 79430398 79430416 TATAGTCGGAAGCTCTGCC 59 NA Rattus norvegicus 81 Slitrk6 ENSRNOG00000022337 ENSRNOT00000038433 1 1 1 87 15 95511354 95513745 GCTTTACAGACACGGATCAC 59 95511286 95511309 GTAGAGATAGACAAGCAAGAAGAG 59 NA InUTR Rattus norvegicus 81 Ncln ENSRNOG00000004793 ENSRNOT00000007110 2 1 1 82 7 11086711 11086729 CTCTGTACTGCTGGAGCTG 60 11086774 11087633 AGAACAGAAGGTTGTACGCT 59 NA Rattus norvegicus 81 AABR07017662.1 ENSRNOG00000039404 ENSRNOT00000060386 3 1 1 88 15 29810629 29810777 TCTTAGTGTTTGGAGGAAGC 58 29810560 29810578 GTTCACAGTCAGAGAAGCC 58 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000004776,ENSRNOT00000020608 1 3 3 80 14 21089139 21091198 GAAATTGACAGAGGAACTTGC 58 21089079 21089099 CTTTCTTCTTTAACCCGTTCC 57 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 2 2 2 80 3 60086736 60088295 GCCTGGTCTCCTTGATCTG 60 60086674 60086692 TAGCTGTGAGCATGTGAGG 60 NA Rattus norvegicus 81 Olr1519 ENSRNOG00000045565 ENSRNOT00000074715 1 1 1 60 10 61160384 61160403 CCCAGAACAAAGCTATCTCC 58 61160425 61160444 AAAGACACCAGGAAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000079069,ENSRNOT00000083012 2 4 5 93 1 15845063 15845084 CTTGAAGATGAGCTGACTTCTC 59 15845138 15845990 AGCTGATGAAGCCAGTCTC 60 NA Rattus norvegicus 81 Ambp ENSRNOG00000006889 ENSRNOT00000009248 3 1 1 80 5 78978280 78980428 CTTCATTTGCAAGAGCCCG 60 78978218 78978236 GGGTCCCAGTTATGAGTGG 60 NA Rattus norvegicus 81 LOC680273 ENSRNOG00000039296 ENSRNOT00000060192 3 1 1 81 12 17903407 17904155 GCATACAGCTACATCGCTC 59 17903344 17903362 AGTCGTAGATGCCTGACAG 59 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700,ENSRNOT00000013605 2 2 2 80 3 119050618 119052054 GGTTCCTGAGAATACAAGATACC 59 119052093 119052112 TAAAGCCCTCTTCCATCAGG 59 NA Rattus norvegicus 81 Mfsd1 ENSRNOG00000013790 ENSRNOT00000018489 2 1 1 80 2 164760757 164762078 GATTGCCATGTGTCTGCTG 60 164762122 164762140 TCGGGAACTATGAATGCCA 59 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 1 2 2 80 15 27773200 27773458 TTTCCTTAGCTCTGTGCCA 59 27773138 27773156 AGTTCTGAGACCCGATGTG 59 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 1 2 2 80 5 147861943 147862701 TTTCCAAAGAGCCAAGTCC 58 147861881 147861901 TCTTCAGAAACTCCACAAACC 59 NA Rattus norvegicus 81 Rab11fip3 ENSRNOG00000032152 ENSRNOT00000027439 3 1 1 82 10 15353048 15353066 GATGAGGAGAACAGTGAGC 58 15352336 15353002 ATCTTCTGCTTCTCCTCCT 57 NA Rattus norvegicus 81 LOC685438 ENSRNOG00000050981 ENSRNOT00000064787 1 1 1 80 12 21362116 21362135 CTTCCTGAACAGAATCTGGC 59 21361760 21362075 TAATGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 Smim3 ENSRNOG00000019536 ENSRNOT00000026426 2 1 1 65 18 55771401 55771419 GCTTGTAATCCTGACTGGG 58 55746134 55746152 GGATTGGCTGATAGCATCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tsc22d4 ENSRNOG00000050805 ENSRNOT00000039280 1 1 1 83 12 22016966 22019899 GAGACAGGGAAGGTACCTC 59 22016901 22016919 TGGAGACTTGTGAACCAGG 59 NA Rattus norvegicus 81 Tlx3 ENSRNOG00000004976 ENSRNOT00000006676 1 1 1 113 10 18130543 18130561 AAATCGGAGGACCAAGTGG 60 18129526 18129544 TTGAGGCTCTTCTGGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tlx3 ENSRNOG00000004976 ENSRNOT00000006676 2 1 1 118 10 18130543 18130561 AAATCGGAGGACCAAGTGG 60 18129521 18129539 AGTCGTTGAGGCTCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000063786 1 1 2 83 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126632603 126636230 GCATCATCTTCATCACCATCC 59 NA Rattus norvegicus 81 Olr679 ENSRNOG00000057763 ENSRNOT00000084947 3 1 1 60 3 77910901 77910919 ATCTCCTATGGCGTCATCC 59 77910859 77910878 CTTTCCTTCGTCCTTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdia4 ENSRNOG00000006228 ENSRNOT00000008728 1 1 1 80 4 77481995 77483347 CCAGGAAGAAATTGTTGCCA 59 77481934 77481956 GTCAATGTAAGAGTGACTTCAGG 59 NA Rattus norvegicus 81 Tti1 ENSRNOG00000012880 ENSRNOT00000017213 2 1 1 80 3 154474401 154474704 CTGGACTTAGGTGAGGGTG 59 154474339 154474358 TAATTTCACGGGCTGTTTGG 59 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391,ENSRNOT00000033806 3 2 2 80 14 20673505 20673523 TCAGCTCTTCACGGAACTC 60 20662515 20673462 TTAATCCACCTGGCTGTCTC 60 NA Rattus norvegicus 81 Topors ENSRNOG00000006485 ENSRNOT00000066081 1 1 1 82 5 56558457 56565040 CCTCGGAGATAATGGCCTC 59 56558393 56558411 CTGCTGCAGTTTGCTAGTG 60 NA Rattus norvegicus 81 Cd302 ENSRNOG00000006623 ENSRNOT00000008987 3 1 1 88 3 46335145 46335163 CCAAGACAGGTGAATGGAG 58 46333533 46335095 CTTCTTGTCATATGGGATTGC 57 NA Rattus norvegicus 81 Tk2 ENSRNOG00000012853 ENSRNOT00000017269 3 1 1 80 19 921401 921419 AGGGCAATATTGCAAGTGG 59 921463 923766 CAGGCTCCATTAACACCTC 58 NA Rattus norvegicus 81 LOC100909771 ENSRNOG00000048973 ENSRNOT00000073537 2 1 1 80 1 259940637 259940739 TGTCTCTGCAAGATTATGCC 58 259940781 259940800 GGATAATCCTCGAAGAAGCC 58 NA Rattus norvegicus 81 Mslnl ENSRNOG00000039339 ENSRNOT00000060286 2 1 1 80 10 15115380 15115471 CAAACTTGCTCAGATCTACCC 59 15115513 15115531 AGGGAGTAGAGGTAGACCA 58 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120,ENSRNOT00000081282 2 2 2 80 1 91030707 91030728 CTGAGACAAGAGAACTCATCCT 59 91030766 91031089 CCTCCTCATAATACTCCCTGTG 60 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 3 3 3 82 12 39693750 39693772 GAGCTATGACTATCTCAAGACTC 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Olr554 ENSRNOG00000010035 ENSRNOT00000013319 2 1 1 60 3 75265936 75265959 CCTCTCATCATGAACAATAGTCTC 59 75265976 75265996 CTCCACTTATCCAACATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559682 ENSRNOG00000022492 ENSRNOT00000037377 3 1 1 60 15 81577344 81577363 TGTTCTTCAACATCACTGCT 58 81577303 81577322 GCAAACAACTCCAAGGAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg5 ENSRNOG00000019590 ENSRNOT00000026514 3 1 1 80 2 187732575 187732593 TGAAGAAAGAACAGCCAGG 58 187732636 187733367 AGCGAATGTATCTGTTTCCC 58 NA Rattus norvegicus 81 Tgm7 ENSRNOG00000037203 ENSRNOT00000056190 3 1 1 80 3 113045010 113047031 ACAAGTATCCAGAAGGATCCTC 59 113044951 113044969 AGTTCCTTCTCGGTTCCAG 59 NA Rattus norvegicus 81 Eif4e3 ENSRNOG00000010301 ENSRNOT00000013719 2 1 1 89 4 132083996 132084014 CAACAACATCCCTCCTGTG 59 132082545 132083943 CTCTCCTCTTCCCACAGTG 59 NA Rattus norvegicus 81 Arrdc5 ENSRNOG00000047223 ENSRNOT00000073054 1 1 1 80 9 10762779 10762797 CAAGAAGAGGCTGTACCTG 58 10762840 10765661 TCTACAGACAGTGGGTTCTC 59 NA Rattus norvegicus 81 Smad7 ENSRNOG00000018359 ENSRNOT00000024831 1 1 1 94 18 71397852 71399216 CTCTGTGAACTAGAGTCTCCC 59 71404512 71404530 GAGGAAGGTACAGCGTCTG 60 NA Rattus norvegicus 81 AABR07042599.1 ENSRNOG00000050134 ENSRNOT00000071393 3 1 1 80 19 212505 212527 ACTTAGAGATGGAGAACACTGAG 59 212565 213218 TGAGCAGGTTTCTAGAGAAGG 59 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 1 2 2 86 11 70570517 70570535 AAATGACGAAGAGCAGACG 58 70550961 70570468 TCCTGCTTTACACTTATGGG 57 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000049622,ENSRNOT00000057266 1 2 2 80 12 41284931 41284951 GAACTTCCTGAAGTATCGTGC 59 41284988 41287924 CTCTTCTTACACAGTTGATACCAG 59 NA Rattus norvegicus 81 LOC100912217 ENSRNOG00000047847 ENSRNOT00000073864 3 1 1 82 1 173013088 173013107 AATCCAGGTACTCACCAGAC 59 173013147 173015463 GATAAGTGGATTATTCAGCAGAGG 59 NA Rattus norvegicus 81 Mettl11b ENSRNOG00000025415 ENSRNOT00000076404 2 1 1 86 13 81990755 81990773 GTTACCACTGCTACAGCCT 59 81989941 81990705 TCAGGTACCCTGATACCCA 59 NA Rattus norvegicus 81 Rnf213 ENSRNOG00000029658 ENSRNOT00000044983 2 1 1 80 10 108585058 108585077 GCGTAAGATCCTTGTCATCC 59 108585120 108586263 GCAGAATACTTGGCAGAGG 58 NA Rattus norvegicus 81 AABR07017768.7 ENSRNOG00000060582 ENSRNOT00000090761 1 1 1 60 15 30821095 30821113 GGTCACTCTCACAGAGCAG 60 30821133 30821155 TGAGTAAGTAGTCTGATAGGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 2 2 2 80 15 28634548 28634566 CATTGATGAAGCCCATCGG 59 28633500 28634504 ACTTTATGCTCCAGGTCCA 58 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081904 2 1 3 60 20 3344982 3345000 GGAGGAATTTCTCTGCCGA 60 3345023 3345042 TCATCGTAATGCAGCAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1415 ENSRNOG00000026695 ENSRNOT00000039778 1 1 1 60 10 43930990 43931009 TCATCCTTCTCATCTACGCC 59 43930949 43930969 CAGATGAGGAGTATCAAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690015 ENSRNOG00000033146 ENSRNOT00000049028 3 1 1 61 1 77541470 77541488 GTGGACACAGTCAAGTTGG 59 77541509 77541531 TAGAGCCAGTTCTCATCATATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Swap70 ENSRNOG00000009910 ENSRNOT00000013276 3 1 1 80 1 174897154 174905067 ATTGTGCCAGAAGAGATCG 58 174905110 174905129 TTCAAATTGCTCTTGTTGCC 58 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298,ENSRNOT00000077347 3 2 2 80 10 10816652 10818545 TCTGAATCATGGAGTCAAAGTG 59 10818586 10818604 ATGTGACCATACTGCTTGG 58 NA Rattus norvegicus 81 Zfp846 ENSRNOG00000020356 ENSRNOT00000068461 3 1 1 80 8 21612041 21612060 ATCAAGCTCACAGAGACCTC 59 21612103 21614409 TGATGACCTCACATCCTGC 60 NA Rattus norvegicus 81 Cldn15 ENSRNOG00000001419 ENSRNOT00000001923 1 1 1 80 12 22739764 22739784 TTGCTATCTCATGGTATGCTG 58 22739617 22739722 AGCCCAGTTCATACTTGGT 59 NA Rattus norvegicus 81 Tfeb ENSRNOG00000014666 ENSRNOT00000039102 2 1 1 89 9 15213595 15214040 CCTGAGAAAGAGTTTGATGATGTC 60 15213529 15213548 GTTAGGCATCTGCATTTCGG 60 NA Rattus norvegicus 81 LOC687298 ENSRNOG00000032482 ENSRNOT00000047732 3 1 1 60 10 2229229 2229247 AAGATCTACGGAGGACAGC 59 2229187 2229205 TAGAGCCTCTGCTGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 2 2 2 122 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667143 51667161 TTCCTCTGTAGACTCCTCC 57 NA Rattus norvegicus 81 Ttc30b ENSRNOG00000059460 ENSRNOT00000050515 3 1 1 60 3 62759776 62759799 CCTCTGTGTTTCCTACATTATGAC 59 62759739 62759758 CTTCCTCATCAGCTCCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam205a ENSRNOG00000042596 ENSRNOT00000068752 1 1 1 98 5 58288005 58288023 TACCGAGGATTGAAGTGCG 60 58286830 58287335 AAGTCTCCTGGCTCTTGAC 59 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 3 2 2 80 19 38229217 38231889 GGAGGGTAAGAAGGTCTCC 59 38231933 38231951 CAGAAGTACAGGTTGTGCC 59 NA Rattus norvegicus 81 Tra2b ENSRNOG00000001783 ENSRNOT00000002429 3 1 1 80 11 82389942 82390832 GATAGAGATCAGATTTACAGAAGGC 59 82390869 82390888 TCTTGATCGAGAACGAGACC 59 NA Rattus norvegicus 81 RGD1560088 ENSRNOG00000032733 ENSRNOT00000047207 3 1 1 60 1 90729398 90729417 AACTTAAACGGGAGCATCTG 58 90729440 90729458 TCCTTGATATGCGTTTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796,ENSRNOT00000081866 1 2 2 80 1 241031970 241033651 CATGGGTGGAATATGAGAATGTG 60 241031912 241031932 TTCTGACCTCTTCCTTCACTC 59 NA Rattus norvegicus 81 Fam72a ENSRNOG00000042747 ENSRNOT00000068223 3 1 1 80 13 48293451 48293470 TGCAACAATGGACACTTCTG 59 48293511 48298520 GAAGTTTACACCAGTCGAGTC 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235 2 1 2 81 1 215215845 215215863 AGCGGAATTGGAGGAACTC 60 215217291 215226022 GACTATCTCTTCCGGTTTATCCT 59 NA Rattus norvegicus 81 AABR07017714.1 ENSRNOG00000046417 ENSRNOT00000071631 3 1 1 69 15 30323787 30323806 TTACTCCTAGGCCTTCACCT 60 30323599 30323617 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1562265 ENSRNOG00000032454 ENSRNOT00000042939 1 1 1 60 5 44270358 44270376 TGAAAGTGGTTGGTTGCAG 59 44270399 44270418 TTGTCCTGAGATTCTTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2a ENSRNOG00000011330 ENSRNOT00000015451 1 1 1 80 19 61466 61486 GAGCTATTATGCAGAGTGGAG 58 60251 61425 TGGCTACTGTCTTGTAGACC 59 NA Rattus norvegicus 81 Nudt16 ENSRNOG00000012962 ENSRNOT00000017318 2 1 1 123 8 113674700 113674718 ACTTCTATGCCAAACGCCT 60 113673881 113673899 TCACGCATGATGTACAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Osgep ENSRNOG00000009333 ENSRNOT00000012790 1 1 1 80 15 27844641 27846035 ATACTCAGGTGATTTCCTACTCAG 60 27844584 27844603 CCAAACAATTTCCCACAGCA 60 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000064760 2 1 2 202 10 87564102 87564121 TTGCATTTCTAGCTGTTGCC 60 87563880 87563898 GACCACAGACTGGTCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Cebpb ENSRNOG00000057347 ENSRNOT00000083876 3 1 1 197 3 164424631 164424649 ACTTCTACTACGAGCCCGA 60 164424810 164424828 AGAGGTCGGAAAGGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mospd3 ENSRNOG00000001396 ENSRNOT00000001890 2 1 1 80 12 22166107 22166293 CATTGACATTGTGATACGGC 58 22166336 22166354 TCAGATAGCTCAATGCGGA 59 NA Rattus norvegicus 81 LOC102553715 ENSRNOG00000045683 ENSRNOT00000057880 3 1 1 106 10 49002530 49002550 ATGTTGACTTCTCCATCTCCC 60 49002617 49003005 GTAGGACAGTGAGTCACCTG 60 NA Rattus norvegicus 81 Kctd5 ENSRNOG00000057186 ENSRNOT00000084991 2 1 1 80 10 13432867 13445877 TTCGGACAAGGATGAAACG 58 13432805 13432823 TGTCTCAGGTAGTTCAGCA 58 NA Rattus norvegicus 81 RGD1565635 ENSRNOG00000016417 ENSRNOT00000021981 3 1 1 66 18 750863 750882 GATGTGATGCAGGAAACCTG 59 751085 751105 CAAGGATACAGTCTTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Sec61a2 ENSRNOG00000023278 ENSRNOT00000039621 1 1 1 80 17 76362967 76370772 TCTTAGTATGCTGTCAGATTCC 58 76370808 76370831 GAATAACTCTCATCCAGTAGAAGG 58 NA Rattus norvegicus 81 Pcdhb2 ENSRNOG00000039476 ENSRNOT00000060497 2 1 1 60 18 30377006 30377026 TCTTATGACAAACACAGCCCT 60 30377046 30377066 AGTGATGGTGATGTTGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017599.1 ENSRNOG00000047018 ENSRNOT00000072403 2 1 1 85 15 29064790 29161835 AGCTACACTGGGTTAGCAG 59 29161884 29161902 GTTGAAAGAGGCTTTGGCT 59 NA Rattus norvegicus 81 Hs3st3a1 ENSRNOG00000024591 ENSRNOT00000033737 2 1 1 60 10 50928365 50928387 CAGTATCTTCAGGAAGTTCTTGC 60 50928405 50928425 GAAGACGTAGAGGGAAGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpa3 ENSRNOG00000011181 ENSRNOT00000014970 3 1 1 80 2 105017153 105020769 CCACAATTTACAAGACATCAGG 58 105017094 105017113 GAAGCTCAAAGGCAAATGTG 58 NA Rattus norvegicus 81 Arfgef3 ENSRNOG00000011460 ENSRNOT00000015927 2 1 1 80 1 13895825 13895844 TACTGCTCAACCTGAAACTG 58 13895015 13895784 TGAACTCTTTCATCATGCCTG 59 NA Rattus norvegicus 81 LOC100361537 ENSRNOG00000026900 ENSRNOT00000034506 2 1 1 80 11 88166254 88166275 CATCTTTCACAGATCCATCAGG 59 88166627 88167123 CAGTATGACTCTCCTCCTGTG 59 NA Rattus norvegicus 81 Pianp ENSRNOG00000017052 ENSRNOT00000065846,ENSRNOT00000078769 3 2 2 104 4 157515291 157515976 CTTCAAGTTCTGCTGGGAC 59 157516044 157516062 GGAGACAGGTCTGTCAGTG 59 NA Rattus norvegicus 81 Sirt7 ENSRNOG00000036683 ENSRNOT00000054951 1 1 1 80 10 109797938 109798136 ATTGTGAACCTGCAGTGGA 60 109797876 109797895 GAGCCGCATTACATCATCAC 60 NA Rattus norvegicus 81 Olfm2 ENSRNOG00000020519 ENSRNOT00000027829 2 1 1 81 8 21691294 21691312 CTGTGATTCCTGCACAGAG 58 21689464 21691249 ACATTCTGGACCTTCTCCA 58 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 1 1 1 64 5 106952584 106952602 GAGCAGAAGTCTGGAGAGC 60 106952627 106952789 TTCCTCCTTACTCTGTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 2 1 1 65 5 106952583 106952601 AGAGCAGAAGTCTGGAGAG 58 106952627 106952789 TTCCTCCTTACTCTGTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043200.1 ENSRNOG00000058276 ENSRNOT00000040473 2 1 1 81 19 26416973 26417456 CATGAAGAACAGGCCACAC 59 26417499 26417519 CAGAATTGACATGACTGCCTC 59 NA Rattus norvegicus 81 LOC685027 ENSRNOG00000029310 ENSRNOT00000051387 1 1 1 60 5 144928437 144928458 GATGACAGATATGACGAGATCC 58 144928479 144928497 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 1 2 2 81 7 125848024 125849365 CCAACCTAGGCAACATTCTG 59 125849406 125849427 ATAAGGACATTGTTCTTCCCTG 58 NA Rattus norvegicus 81 Rn60_13_0842.3 ENSRNOG00000051020 ENSRNOT00000030922 1 1 1 60 13 79273181 79273202 GTTCACTTTAAGAATACTCGGG 57 79273142 79273161 CTTTGCGGATATGCATACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sst ENSRNOG00000001837 ENSRNOT00000002519 1 1 1 60 11 80358415 80358434 CGTCAGTTTCTGCAGAAGTC 59 80358457 80359096 AGTACTTGGCCAGTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 3 2 2 80 10 11856992 11861852 AGGAACGGTTTGAAGAAGC 58 11856930 11856949 TCTTGAGCAGTCTCTTCTCC 59 NA Rattus norvegicus 81 AABR07065420.1 ENSRNOG00000055661 ENSRNOT00000086287 1 1 1 80 6 127842273 127842294 GAGAAGCTCAAAGCACAGG 59 127842338 127842356 GGTGACAATCTCTGTGTCC 58 NA Rattus norvegicus 81 AABR07065420.1 ENSRNOG00000055661 ENSRNOT00000086287 2 1 1 80 6 127842273 127842294 GAGAAGCTCAAAGCACAGG 59 127842337 127842356 GGTGACAATCTCTGTGTCCA 60 NA Rattus norvegicus 81 Mob3a ENSRNOG00000018971 ENSRNOT00000025634 3 1 1 91 7 11892929 11892948 TGAACACCTGCTATAAGCAC 58 11893002 11894462 CGATGTCATCTCCTTCAGG 57 NA Rattus norvegicus 81 Cptp ENSRNOG00000022455 ENSRNOT00000039117 1 1 1 80 5 173316053 173316071 AGTGTCTCACTGACAAGGG 59 173315781 173316009 GGCTGTTCAGAAACCTGAC 59 NA Rattus norvegicus 81 AABR07069386.1 ENSRNOG00000046689 ENSRNOT00000075473 1 1 1 80 8 20566331 20566353 CACATTTCTTCTGTCTGGCT 58 20566396 20566414 TCACCGCATACATGAAGAC 58 NA Rattus norvegicus 81 Prim1 ENSRNOG00000031993 ENSRNOT00000065593 3 1 1 80 7 2445640 2445660 GATATCAACGTCAGCAAAGGA 59 2445702 2447431 CACAGAAATGCGACCTGTC 59 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 2 2 2 85 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958575 94958595 TCACAAGTCCCAGATATTGGT 59 NA Rattus norvegicus 81 Tcea3 ENSRNOG00000011794 ENSRNOT00000015776 3 1 1 81 5 154630041 154633457 ATTGTACCTATAACCAGGTGC 58 154633500 154633518 CGATTCCCACATTCATTGC 58 NA Rattus norvegicus 81 Cwc22 ENSRNOG00000012651 ENSRNOT00000037684 1 1 1 80 3 64765378 64766409 GAAGACAGATATACAGAGCAAGAC 59 64765321 64765340 GGATCGCTCATAGTCTGACC 60 NA Rattus norvegicus 81 Gadd45b ENSRNOG00000019822 ENSRNOT00000026871 2 1 1 80 7 11647417 11647859 AACTGATGAATGTGGACCC 57 11647355 11647374 GCAGAGCAATATCATCCTCC 58 NA Rattus norvegicus 81 Chrm2 ENSRNOG00000046972 ENSRNOT00000075341 3 1 1 60 4 64089302 64089324 GAACTTGTATACCCTCTACACTG 58 64089343 64089362 GTCACATACTACAGGTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100,ENSRNOT00000082712 2 2 2 80 16 32349887 32353318 GAAGGAAATGTGGAAGAACCTG 60 32349828 32349846 CAAACTCCCATCTGAGGGT 59 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000043100,ENSRNOT00000082712 3 2 2 80 16 32328130 32328148 AGATGTCCCAGATGAGGAG 58 32327441 32328088 TCAGCATCACTGTTATCTGAG 58 NA Rattus norvegicus 81 LOC100362109 ENSRNOG00000030150 ENSRNOT00000048614 2 1 1 127 7 123296378 123299711 AGGAACGTCACTAAGGTGC 60 123299802 123299820 TGCTGGATGTGAACATCCA 59 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110,ENSRNOT00000047831 3 2 2 80 1 171939607 171939625 AGAAATCGAGCGTCTTCAC 58 171939666 171941364 TGGATTTCTTGATCTCGTTCTG 59 NA Rattus norvegicus 81 Twistnb ENSRNOG00000010750 ENSRNOT00000014373 1 1 1 80 6 52765107 52765127 ATGTGTTTCGCTTAGACTCAG 59 52765168 52765736 CCTTATGCTGCAAACTTGTG 58 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786,ENSRNOT00000085211,ENSRNOT00000057395 1 3 3 80 13 103259881 103259902 CTGCTATTACACATTCGATCCA 59 103259419 103259840 TAAACCAAGCCCTTCTCGT 59 NA Rattus norvegicus 81 Vwf ENSRNOG00000019689 ENSRNOT00000026643 3 1 1 80 4 158164458 158164477 AAATGCAAGAAACGGGTGAC 60 158164516 158165916 AGGTCTCTTAACATTCACCTCTC 60 NA Rattus norvegicus 81 Abo2 ENSRNOG00000045801 ENSRNOT00000061276 3 1 1 84 3 5389253 5389755 CTGACACCCACTAGGACAG 59 5389187 5389208 GTATGTCAATGTTGAAGGTCCC 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293,ENSRNOT00000090922 3 2 2 85 X 118289532 118314560 GGGCAATATCAATAGGAGTTTCAG 60 118314604 118314622 GCACGTGGTGTTATTCACG 60 NA Rattus norvegicus 81 Mettl3 ENSRNOG00000013111 ENSRNOT00000017720 2 1 1 80 15 28721012 28721033 CCCATAAGAAACAACTGGACTC 59 28715667 28720971 TCCTTAAGTCCAAGTGCCC 59 NA Rattus norvegicus 81 Med22 ENSRNOG00000005059 ENSRNOT00000006720 1 1 1 80 3 4862470 4864526 CTCGTCCAGCTCAAGTCTC 60 4862408 4862426 GAATCTGTGTCGAGGTCCA 59 NA Rattus norvegicus 81 Rnmt ENSRNOG00000016698 ENSRNOT00000022410 3 1 1 81 18 64102783 64102803 CCGAGTACATGAAGAACAGTC 59 64103641 64104766 AAGTAAATGCTTGTAGCTTCCC 59 NA Rattus norvegicus 81 Prkch ENSRNOG00000004873 ENSRNOT00000006729 1 1 1 80 6 96592906 96595114 CCAACCTCGAAACTCATTTCC 60 96595156 96595174 AACACCGATCCCATTTCCT 59 NA Rattus norvegicus 81 LOC102552337 ENSRNOG00000045614 ENSRNOT00000034566 2 1 1 80 5 121453434 121453455 TCGATGTAGATACTTTCAAGGC 58 121453230 121453394 GTTTACACCTCCTAGACCGA 59 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 2 2 2 81 3 97892547 97895052 GGAATTCACGAAGGGTATGG 59 97895095 97895114 GTTGGAAGCTGACTGTACAG 59 NA Rattus norvegicus 81 LOC299271 ENSRNOG00000026297 ENSRNOT00000035035 1 1 1 80 6 127548473 127548494 AATTTGAGGAAAGTGAGAAGGC 59 127546264 127548432 GCCACCTCTTACTCATGGG 60 NA Rattus norvegicus 81 Ccl19 ENSRNOG00000015668 ENSRNOT00000020982 1 1 1 80 5 58181712 58181731 TGGTAACATCGTGAAAGCCT 60 58181435 58181672 CTTAGTGTGGTGAACACAACAG 60 NA Rattus norvegicus 81 Csn1s2b ENSRNOG00000055083 ENSRNOT00000087672 2 1 1 81 14 21908312 21909596 AGCTCCCATAAAGAACAAATGC 60 21908252 21908276 GTGATATTGATAAAGACCCTTGAGG 60 NA Rattus norvegicus 81 LOC102556119 ENSRNOG00000029678 ENSRNOT00000004902 2 1 1 68 10 36419708 36419726 GAGAAGAACCCTGGAAAGC 58 36414315 36419681 GAAGACTGCTATTACATCCAAGAG 59 NA DesignRelaxed Rattus norvegicus 81 Retsat ENSRNOG00000014090 ENSRNOT00000019571 2 1 1 81 4 100473697 100473715 CTGCATCCTCATGCAATGG 59 100473758 100473981 AGGTGAAGATATCTTGGCCTG 60 NA Rattus norvegicus 81 Rhoa ENSRNOG00000050519 ENSRNOT00000071664 2 1 1 80 8 117106667 117106685 CCAGAGGTTTATGTGCCCA 60 117106728 117109586 TAAAGCCAACTCTACCTGCT 59 NA Rattus norvegicus 81 Malt1 ENSRNOG00000017181 ENSRNOT00000068418 1 1 1 80 18 61156464 61156483 CAAGTATAGTCCACAAGCCA 57 61156522 61158580 GATCAATATCTAGGTCAAGAGGG 58 NA Rattus norvegicus 81 Olr578 ENSRNOG00000050566 ENSRNOT00000042725 2 1 1 60 3 75752280 75752300 TTCTCAGACCTCTGCTATTCC 59 75752240 75752260 TGATCATTAGATCCAGCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga1 ENSRNOG00000039463 ENSRNOT00000060475 1 1 1 60 18 30809839 30809858 CTGACCACAATGAGAATGCT 58 30809879 30809899 ACTCCCTGAATAGTGTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adar ENSRNOG00000020744 ENSRNOT00000028181 1 1 1 80 2 189077794 189078028 CATCCAAAGACACTTCCTCTC 59 189078070 189078088 CAGAGCGTTGAAGCATCTG 59 NA Rattus norvegicus 81 Mir6334 ENSRNOG00000049688 ENSRNOT00000071266 2 1 1 61 3 150911628 150911650 CCTAAGCACTGTAATCACTAGTG 59 150911589 150911607 TTCCCATCAGATCCCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alk ENSRNOG00000008683 ENSRNOT00000011630 1 1 1 80 6 23172982 23174348 CATCATGATTGTGTACCGCC 60 23174389 23174409 CTCAGCTTATACTCAGGGCTC 60 NA Rattus norvegicus 81 Lcn1 ENSRNOG00000033761 ENSRNOT00000042910 2 1 1 80 3 4233245 4233699 ATCAGGATGTGTCAGGAACG 60 4233739 4233760 ACACAGATCCAAACTTCTTGTC 59 NA Rattus norvegicus 81 Slc25a41 ENSRNOG00000048853 ENSRNOT00000074117 3 1 1 80 9 10007597 10007615 GGCAATGGTATAAACGTGC 58 10007658 10007785 GAAGAAATTCCTGGACTGCT 58 NA Rattus norvegicus 81 Olr839 ENSRNOG00000049174 ENSRNOT00000047909 1 1 1 60 5 59312812 59312830 TGACTCCCATGTTGAACCC 60 59312770 59312788 ACAGCAGTCTTCACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1582 ENSRNOG00000046512 ENSRNOT00000040596 2 1 1 60 13 91712471 91712491 CCAGGTTACATCTGTGTTTGG 59 91712512 91712531 AAAGAAGTGGGCAATAACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 1 2 2 80 12 23789798 23789816 CAACTAGTGCAGAAAGCCC 59 23789859 23814659 CTCTGTCACGTTCTTCATGG 59 NA Rattus norvegicus 81 Olr678 ENSRNOG00000056750 ENSRNOT00000080803 1 1 1 60 3 77893138 77893156 GTTACCTTTCTGTGGACCC 58 77893096 77893117 CAATAATGGGAACAAGTCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmc1 ENSRNOG00000013807 ENSRNOT00000018526 2 1 1 80 7 120836042 120836061 ATCGGGATTCCAAGATGAGG 59 120833802 120835192 ATATCAGCCATGTTGATTCCG 59 NA Rattus norvegicus 81 Pcgf6 ENSRNOG00000020250 ENSRNOT00000027450 2 1 1 80 1 266823476 266826015 GTTCATTGGTGCTAATGAAGAC 58 266820888 266820909 ATAGTTGCTTCTCCTGAAACAC 59 NA Rattus norvegicus 81 Bbox1 ENSRNOG00000059519 ENSRNOT00000080175 3 1 1 80 3 101430113 101430132 TTGTTGACCTGATGAACAGC 59 101427186 101430072 GCCAGTTGTCAAAGGTAATCC 60 NA Rattus norvegicus 81 Gprin3 ENSRNOG00000023657 ENSRNOT00000039316 3 1 1 60 4 89695332 89695351 CCCACCAAATACTAGCACCT 60 89695291 89695310 GTTTGCCTCTGATTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000078355 2 1 3 60 20 3317613 3317631 CAGCCTGGTCTACAAAGAG 58 3317653 3317673 AATACACAGAAGCTCTTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910934 ENSRNOG00000049893 ENSRNOT00000071612 3 1 1 60 18 55392260 55392278 GAGCATCATCCCTTCACTG 58 55392301 55392320 GCATTTCTTCAGAGTCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jak1 ENSRNOG00000011157 ENSRNOT00000064542 3 1 1 80 5 119989426 119989445 CTATGATCCCAACCAGAGAC 57 119989256 119989384 ACAATGTCTGGATTCTGCTC 58 NA Rattus norvegicus 81 Wasl ENSRNOG00000006975 ENSRNOT00000009261 1 1 1 81 4 51682099 51682117 ACTTCAGGAATTGTGGGTG 58 51680253 51682057 CATCTTCATCTTCATCTGAGGA 58 NA Rattus norvegicus 81 Foxi3 ENSRNOG00000006491 ENSRNOT00000008494 2 1 1 65 4 98776471 98776489 CTGCTTCAAGAAAGTGCCC 60 98779479 98779502 GGATCTAGAGTCCAGTAATTACCT 59 NA DesignNoJunction Rattus norvegicus 81 Mbnl2 ENSRNOG00000010737 ENSRNOT00000014300 3 1 1 81 15 105756861 105756880 CCATGATCGACACAAACGAC 60 105756921 105756943 TATTTGCATTTCTCCCTCATGC 60 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 3 2 2 63 8 21479630 21480224 CAAACGCAGACAGGAAGTG 60 21479585 21479606 AGAAGTCTCCATATTGTGTCCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07017624.2 ENSRNOG00000049773 ENSRNOT00000072745 1 1 1 80 15 29360051 29360170 GGATAAACTTTCTCCTAAGAGTTGC 60 29359995 29360014 AGGCTTCTTCAGAGACAGTG 60 NA Rattus norvegicus 81 AC136661.1 ENSRNOG00000037380 ENSRNOT00000047772 2 1 1 85 1 91747011 91747029 GACCTACAGCTACCTGACC 59 91747082 91747115 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Gbp4 ENSRNOG00000028768 ENSRNOT00000022648 3 1 1 80 2 248256297 248256316 CATTGCTGTCTTCATGGAGC 60 248256358 248257729 CATTTCTCTATGGTGGCCAC 59 NA Rattus norvegicus 81 Raver2 ENSRNOG00000023812 ENSRNOT00000033933 2 1 1 81 5 119938326 119938346 GACTACAGCGATTCAGAAGAG 58 119938389 119942531 CTTCATCCTGTGCAAGCTG 59 NA Rattus norvegicus 81 Tlr5 ENSRNOG00000022067 ENSRNOT00000004821 2 1 1 60 13 101383292 101383311 GAACATCAAAGATCCCGACC 59 101383334 101383352 TTGTAGCACCGAACTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr496 ENSRNOG00000045634 ENSRNOT00000013038 1 1 1 60 3 73933550 73933570 TGTTCTTGTGTCTTACCTCCT 59 73933510 73933529 GCCCTCAGTAGAGTTCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdt1 ENSRNOG00000013970 ENSRNOT00000018923 1 1 1 85 19 55382608 55382626 GAGAGCGAGAGTCCAAGAG 59 55382675 55383074 GAGCTTTGTCGACACATGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 1 3 8 80 6 128053950 128053968 AAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 Olr1592 ENSRNOG00000003518 ENSRNOT00000004670 1 1 1 60 13 92209709 92209727 CAGCGATGTCCATTGACAG 59 92209667 92209685 ATGATGGTTGGGTAACGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 3 2 2 80 1 101413104 101413122 CAGAGAATGAGTTCTGCCC 58 101413166 101413412 GTACTCGAACCATGCTAGG 57 NA Rattus norvegicus 81 Gpr160 ENSRNOG00000009487 ENSRNOT00000012560 1 1 1 112 2 116106569 116143736 CAGTTGTATTCAGAGGGCA 57 116106475 116106494 TCTTTGAAGGAAGAGCTGTC 58 NA InUTR Rattus norvegicus 81 Gpr160 ENSRNOG00000009487 ENSRNOT00000012560 2 1 1 114 2 116106569 116143737 ACAGTTGTATTCAGAGGGCA 59 116106474 116106494 TTCTTTGAAGGAAGAGCTGTC 58 NA InUTR Rattus norvegicus 81 AABR07019870.1 ENSRNOG00000038033 ENSRNOT00000057873 3 1 1 60 13 5480530 5480548 TGCTGCAAAGAAACTAGGA 57 5480572 5480590 ATAGAGCTGCTTGTCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Notch1 ENSRNOG00000019322 ENSRNOT00000026212 2 1 1 80 3 3909813 3909831 GCTGTGAACAATGTGGACG 60 3908584 3909771 AGTCTCCTCCTTGTTGTTCTG 60 NA Rattus norvegicus 81 Pdgfra ENSRNOG00000002244 ENSRNOT00000003077 1 1 1 80 14 35565594 35569767 TCTATGTACCAGACCCAGAC 58 35565533 35565551 CAGAATCGTCCTCTTCCAC 58 NA Rattus norvegicus 81 LOC100360333 ENSRNOG00000042026 ENSRNOT00000067020 3 1 1 60 17 5311889 5311907 GAGGTGGCATGTTCTTCTC 58 5311930 5311949 TTGGATGCAGTTCTACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcbp3 ENSRNOG00000001245 ENSRNOT00000001675 3 1 1 80 20 12591020 12591040 GAATCTAAGGTCTCGGAAGGT 59 12591080 12592275 GATGCTTCCAACTTCCTTTCC 60 NA Rattus norvegicus 81 Lrp10 ENSRNOG00000011592 ENSRNOT00000015468 2 1 1 80 15 33113767 33113876 CCCAATGACAACTCTGTGC 59 33113920 33113938 GGAAGTACCTCCTGGAGTC 59 NA Rattus norvegicus 81 Chchd2 ENSRNOG00000051180 ENSRNOT00000071817 2 1 1 60 9 101388417 101388438 TCTAGAGATCAAGCAGTTTCTG 58 101388378 101388396 CTCACAGAGCTTGACATCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Celf3 ENSRNOG00000020875 ENSRNOT00000028324 2 1 1 80 2 195725578 195725990 CGAGAGTCGAGGAGAAGAC 59 195726034 195726052 AACATCTTCCGGACATCCT 58 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000074621 3 1 2 60 6 129425160 129425178 GGAAGTGGCTATGTTCTGG 58 129425199 129425980 GTTGAACATTTCAATGCAGGTG 59 NA DesignRelaxed Rattus norvegicus 81 Olr660 ENSRNOG00000034028 ENSRNOT00000042848 2 1 1 60 3 77431719 77431738 TTTGTCCTCATTCTCATGGC 58 77431760 77431779 GGTAACGCAAAGGTTTACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fezf1 ENSRNOG00000007608 ENSRNOT00000010019 3 1 1 127 4 50311618 50311638 ATTACATGAAAGAAAGCGCCC 60 50311264 50311531 ATTAAAGACCTTTCCGCAGAC 59 NA Rattus norvegicus 81 RGD1565767 ENSRNOG00000023181 ENSRNOT00000032528 3 1 1 60 3 57191710 57191731 TTATCCTCATTGATCCATCCCA 59 57191671 57191689 GCGATCCATTGAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc88c ENSRNOG00000004482 ENSRNOT00000005908 2 1 1 80 6 125021089 125021108 GTCAACAATGACGTCAACCT 59 124981295 125021049 GAGAACTTCCTGGTAGTAGGTC 59 NA Rattus norvegicus 81 Elmo3 ENSRNOG00000015800 ENSRNOT00000021362 3 1 1 80 19 37264419 37264522 CAAACGGGATTTCTACCTGTG 59 37264564 37264582 TCTAGCCGAGTCTGTTCAC 59 NA Rattus norvegicus 81 Samd7 ENSRNOG00000027995 ENSRNOT00000033449 1 1 1 80 2 116255138 116255156 ACCTGAACCCATAAAGGCA 59 116253213 116255096 TACATTTCCATTTCTGCCCTG 59 NA Rattus norvegicus 81 Tubb3 ENSRNOG00000017209 ENSRNOT00000023452 1 1 1 85 19 56226778 56228388 TATCTTCGGTCAGAGTGGTG 59 56228436 56228454 CATCCAGGACTGAGTCCAC 60 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138,ENSRNOT00000041140 1 2 2 80 10 71638657 71638676 GAGTCTGGCTACTACTTGGA 58 71638717 71643489 ATACGCCTGAAACATGATCTG 59 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346,ENSRNOT00000002557 1 2 2 80 11 87432183 87433005 GTTATCTCTGATGTGGACCTG 58 87432123 87432141 GTTTAAGGTGAGGGCAGTG 59 NA Rattus norvegicus 81 Ip6k1 ENSRNOG00000019932 ENSRNOT00000041402 2 1 1 80 8 116819443 116822188 AACTCTACAAGTTCCTCCTGC 60 116822229 116822248 GGGTACCCATCTTCAAGTCC 60 NA Rattus norvegicus 81 Olr663 ENSRNOG00000047879 ENSRNOT00000049513 1 1 1 60 3 77524851 77524871 CTATGGTGTCATCCTGTTCTC 58 77524811 77524829 GAGTGCTTTCCATCGTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cndp1 ENSRNOG00000027739 ENSRNOT00000034970 2 1 1 80 18 81467849 81468954 AATGAGAAGATCAACAGGTGG 58 81467789 81467809 ATGAAGCTTTGACAACTCCAG 59 NA Rattus norvegicus 81 Emc7 ENSRNOG00000005884 ENSRNOT00000008364 1 1 1 80 3 103954484 103955519 CATGAGACGGGAGATGGAG 59 103955557 103955581 CTTGTCATAAACTCAGAGACATCAG 60 NA Rattus norvegicus 81 Usp35 ENSRNOG00000024961 ENSRNOT00000031161 2 1 1 80 1 162289819 162289838 TTGGTTTGATCAACTTGGGC 59 162288714 162289776 AGTGTCGAAAGTCAGAGGC 60 NA Rattus norvegicus 81 LOC100909998 ENSRNOG00000015188 ENSRNOT00000020367 3 1 1 61 3 120157647 120157667 TCATGGATCTGAGGAGAAAGC 60 120157136 120157629 CAGAGTTAGTTTCCAAGTCTAGAG 59 NA DesignRelaxed Rattus norvegicus 81 Ms4a10 ENSRNOG00000020932 ENSRNOT00000028410 3 1 1 80 1 227019520 227019538 CCTGGAGATCTTCCTGTCG 59 227018909 227019478 GTATCATCCTTGTCCTCTGCA 60 NA Rattus norvegicus 81 Adrb2 ENSRNOG00000019217 ENSRNOT00000026098 1 1 1 60 18 57515206 57515224 CCCTTCAAGTACCAGAGCC 60 57515164 57515184 ACACCATTAGGATGACCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912420 ENSRNOG00000049595 ENSRNOT00000046638 2 1 1 60 5 69277596 69277614 CGCCCATGTACTTCTTCCT 60 69277554 69277577 GAAGATGTTGTGTAGCAGATATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata2 ENSRNOG00000012347 ENSRNOT00000017240 1 1 1 80 4 120140185 120140671 CAAGCTGCACAATGTTAACAG 59 120140712 120140731 GATTTGCTGGACATCTTCCG 59 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 2 2 2 80 19 44064410 44065805 TCACAAGTTAAGGTAGCAGAG 58 44064350 44064370 AGGTTTCTCTAGTTCATCTGC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000088680 2 1 9 60 9 81528009 81528029 TAGCCATCATCTAAGTTTGCC 58 81528050 81528069 CAAGCTACACCATCATCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35a ENSRNOG00000031641 ENSRNOT00000042285 1 1 1 60 5 164923399 164923419 TTTATGCCCGAGATGAAACTG 59 164923439 164923459 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1a ENSRNOG00000018502 ENSRNOT00000024966 2 1 1 82 8 116679457 116679475 CTATGGGTGTCATGGTTGC 59 116679521 116680262 CTTGTAGCCATCTGCATGG 59 NA Rattus norvegicus 81 Rad51d ENSRNOG00000021780 ENSRNOT00000038376 1 1 1 80 10 70234061 70234079 CCAATGGAGGAATGACAGC 59 70233490 70234017 GAGCACTTGCCTGTTTCTC 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 2 2 2 80 4 162183788 162183807 ACATTCAGCAAGGACTTCTG 58 162183161 162183748 CTTTAGGAAATTCAGCTCCTCC 59 NA Rattus norvegicus 81 Bmi1 ENSRNOG00000016585 ENSRNOT00000064257 3 1 1 96 17 85365765 85366419 CCACTACTGAATATAAGGTCAGAC 58 85366559 85366580 AGTCTCTTCTCCTCTTCATCTC 59 NA Rattus norvegicus 81 Rn60_10_0627.1 ENSRNOG00000011753 ENSRNOT00000015673 3 1 1 60 10 62967604 62967623 AATACAGGGTTTGGATGAGG 57 62967563 62967581 TCCTTCTTCTGGGCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr502 ENSRNOG00000052035 ENSRNOT00000083628 2 1 1 60 3 73754753 73754773 AGTTGTCACTGTCTTCTACGG 60 73754713 73754731 GGGACTGGACTTAGGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prlh ENSRNOG00000019871 ENSRNOT00000026912 1 1 1 62 9 98113382 98113400 CTAAGCTTGGTCCTCCCAG 60 98113426 98114095 GGTTCTTGTCTCCATGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Rabepk ENSRNOG00000018591 ENSRNOT00000025194 1 1 1 93 3 13852336 13855906 TCATGAATCCCGAAGCCAG 60 13852261 13852281 CCAATAGCTGCTGATGATGTG 60 NA Rattus norvegicus 81 Olr668 ENSRNOG00000055117 ENSRNOT00000080807 1 1 1 60 3 77661215 77661234 TTCCTTGTTGCTTGTTTCCT 58 77661174 77661192 TTCAGAACTGTGGGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000017730 2 1 2 107 15 28732981 28745385 ATCTGAGAACGGTGATGCT 59 28732892 28732910 CAACATGCGTTCTGGTGAG 60 NA Rattus norvegicus 81 Olr1660 ENSRNOG00000057176 ENSRNOT00000086536 3 1 1 60 17 45670350 45670370 CACATTATCTCTGCAGTTGTC 57 45670392 45670410 TGGTTGTGTTTCCTACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir331 ENSRNOG00000035543 ENSRNOT00000053666 1 1 1 60 7 34881150 34881169 TGTTCTAGGTATGGTCCCAG 58 34881109 34881127 GTTCTAGGATAGGCCCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844,ENSRNOT00000002837 3 2 2 81 14 33143412 33143432 ATGTGAACTGTGTCCTTACTC 58 33137671 33143369 AAATGGCTTCTCACCTGAG 57 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017,ENSRNOT00000087305 3 2 2 80 13 109348319 109348338 AGAAGAAACTGAAGCCTGTG 58 109347245 109348276 CATTCCACCAATGTCTTGC 57 NA Rattus norvegicus 81 Galntl5 ENSRNOG00000040301 ENSRNOT00000062026 3 1 1 93 4 6349546 6427687 AAGTACACCTATCCGGTCG 59 6349471 6349491 CATGTCCTTGTCATACTGTCC 59 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000054539 ENSRNOT00000079880 2 1 1 82 17 44763829 44763847 GACTTCAAGACCGACTTGC 59 44763892 44763911 AATAGACCCACAAGGTAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap54 ENSRNOG00000029837 ENSRNOT00000005492 1 1 1 80 7 33858601 33858622 CACCTTGAACTAATTCAAGCTC 58 33858449 33858562 GGAGAACCAAATGAACCTACC 59 NA Rattus norvegicus 81 Pqlc3 ENSRNOG00000005126 ENSRNOT00000007071 2 1 1 80 6 42295169 42297496 TTGGCCATGAACTTATGCAC 59 42295108 42295126 CGAATCTTGTGCCTTCCAC 59 NA Rattus norvegicus 81 Steap1 ENSRNOG00000000017 ENSRNOT00000000018 1 1 1 80 4 25443018 25443036 GGCTGTGACATCTATCCCA 59 25443079 25446061 ACAATTCCCAGTTTGCTCTG 59 NA Rattus norvegicus 81 Znf740 ENSRNOG00000012192 ENSRNOT00000016240 2 1 1 80 7 143814024 143814350 TGTTCCAGTCAGATGGACTG 60 143814391 143814411 GTTGCGGGATTTATCACTGTC 60 NA Rattus norvegicus 81 Capn7 ENSRNOG00000019273 ENSRNOT00000026323 3 1 1 80 16 7443773 7443794 CTTATGAAACTGCCGATAAGAC 57 7443834 7445964 TCAATGCTTCTGCTCTATCG 58 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 1 2 2 80 8 5686540 5686559 TGGACCAGGGATTAATGGAG 59 5686600 5688297 AGGAATAGGTTGGTACCTGTG 59 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032,ENSRNOT00000003638 1 2 2 80 18 309780 312786 CATTAAGGCCATTGTGAAGGA 59 309720 309738 AAGTCCGTCACTGTCAGAG 59 NA Rattus norvegicus 81 Olr1664 ENSRNOG00000052917 ENSRNOT00000089221 3 1 1 60 17 45801993 45802012 TCTTTGCTTCAATCAACCCT 58 45802033 45802053 TGTCTACCTTGTTGTTTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp24 ENSRNOG00000005802 ENSRNOT00000029228 3 1 1 80 5 126017589 126017608 ACCAACTAGAAACTGCTCCA 59 126017651 126019636 TGGGATCTTCCATGACCAG 59 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 2 2 2 80 3 11366300 11366320 ACTTATGAACTGTCAGGTGGA 59 11366113 11366260 AAACTCCATCTTAACCAGCTC 58 NA Rattus norvegicus 81 Mir3548 ENSRNOG00000035650 ENSRNOT00000053773 2 1 1 60 5 173489412 173489430 AAGAAATCCAGCACTGTCC 58 173489453 173489472 CTTCCTACCAAAGCATACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmnb2 ENSRNOG00000025742 ENSRNOT00000022336 2 1 1 81 7 11673949 11673968 GTGTTGTGAACATCGACGAG 60 11674009 11674107 CCCAAAGATTGATCCTTGTCTG 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 2 2 2 80 4 157483387 157483588 TGACTACTTAGCTGAAGCCA 59 157483326 157483345 GTGACAACTGACAGATGTCG 59 NA Rattus norvegicus 81 Olr1576 ENSRNOG00000009141 ENSRNOT00000012103 2 1 1 60 13 91482157 91482175 CAGAAGAAAGCCTTTGCCA 59 91482199 91482217 AGCCGTAGTGAACAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485,ENSRNOT00000088132 2 2 2 60 20 3891251 3891269 GTAAAGCCCAACTGTACGG 59 3891293 3891311 AGGCACTAGGAGGAATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910928 ENSRNOG00000048744 ENSRNOT00000071756 2 1 1 60 13 9465513 9465532 TGACACTCCTGGTTACACTG 59 9465554 9465573 ATGGTCCTGATGATGTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mlph ENSRNOG00000019763 ENSRNOT00000080449 2 1 1 89 9 98092558 98092576 CTGATGAAGACAGCATCCC 58 98092629 98094938 ACTCCGAGATCTGAGTCTC 58 NA Rattus norvegicus 81 Mrgprx2 ENSRNOG00000033665 ENSRNOT00000049722 1 1 1 80 1 103745665 103760737 ATGGAGGAAAGAAACATCAGC 59 103745605 103745625 CAGAGCTGTGATGTTAGTTCC 59 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 1 2 2 80 20 27433394 27436551 ACAAGAAATCAGGTTCGCAC 59 27436590 27436612 CTGTAGATTCATCTTTCACTGGG 59 NA Rattus norvegicus 81 Gjb4 ENSRNOG00000026910 ENSRNOT00000037128 1 1 1 60 5 145417683 145417702 ACCGTGGACTGTTACATCTC 60 145417642 145417663 CTACCATGAAGTAGGTGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015525.1 ENSRNOG00000056900 ENSRNOT00000087833 1 1 1 60 14 61750518 61750538 TACACTGAATGCAATCCACTG 59 61750559 61750578 CTGTTTCAGAACACAGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 3 4 4 81 1 250693684 250697776 CCTGTTTATCAAGGAGTATTCCC 59 250693625 250693643 GAAGATTCCAACGACGCTG 59 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 2 2 3 89 X 70565953 70566269 TTCAATGAATTCCTGTTCCGC 60 70566319 70566338 TGCATATGTGACCAGGAGAG 59 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076302 2 1 3 60 X 70567204 70567366 GAGGTCCCAAGATTCTGCT 59 70567388 70567408 GTCAGGTAGATAACCAGAGTG 57 NA DesignNoJunction Rattus norvegicus 81 Rtn2 ENSRNOG00000016603 ENSRNOT00000022528 1 1 1 80 1 80206109 80206818 CTTGTCATCTTGGGAGTGG 58 80207614 80207633 CACATACTGGTCAATCTGGG 58 NA Rattus norvegicus 81 Olr458 ENSRNOG00000058782 ENSRNOT00000077865 2 1 1 60 3 73162374 73162393 TCACACTCTTCTATGGCTCC 59 73162415 73162434 AGGGAATAATTGGAACTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a14 ENSRNOG00000025805 ENSRNOT00000035812 2 1 1 80 1 227477382 227477402 AGAGTTCAGCATCTCTGTGAC 60 227474519 227477341 GGAAAGAAGAACACAGCCTC 59 NA Rattus norvegicus 81 Slc2a8 ENSRNOG00000022274 ENSRNOT00000022327 3 1 1 84 3 12023192 12023210 GTTCTGTTCACTGCTGTGG 59 12022682 12023144 AAACCATGATCACACCCGA 59 NA Rattus norvegicus 81 Gatsl2 ENSRNOG00000001484 ENSRNOT00000002033 3 1 1 80 12 25602975 25603808 TCCAATGGAGTGAAGGACC 59 25602913 25602934 ACCCTCAATGAGTGAGAAAGAG 60 NA Rattus norvegicus 81 Hspa14 ENSRNOG00000015212 ENSRNOT00000020854 1 1 1 80 17 78751059 78753395 GATGACATTAACAAGGTTGTGC 59 78753433 78753454 TGGGAAGAGATCTTTAATCAGC 58 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 3 1 1 61 4 149801039 149801058 TGGTGTCCATTGAAGATCCC 60 149800994 149801015 AGTAGCTGTGAGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Lrrc23 ENSRNOG00000026309 ENSRNOT00000051613 2 1 1 80 4 157302927 157303642 GGAGGTTAAGGACAGGGAC 59 157302865 157302886 TTCTCAGAAATATCCACGTAGC 58 NA Rattus norvegicus 81 Slc5a12 ENSRNOG00000028008 ENSRNOT00000046937 3 1 1 80 3 101829034 101831094 GGAAACAGAGCAGGATTACCT 60 101831134 101831154 TGCTTGAGTCCATTCTGTAGG 60 NA Rattus norvegicus 81 Cryba1 ENSRNOG00000008700 ENSRNOT00000011608 3 1 1 83 10 65162937 65163824 GGGCCATGGAAGATAACCA 60 65163871 65163889 AGAGACATTTGGGCAGGAG 59 NA Rattus norvegicus 81 Hmmr ENSRNOG00000059894 ENSRNOT00000085499 3 1 1 80 10 25873279 25873707 CAGAAAGAGATGATCTCCTCAG 58 25873220 25873239 GCTTCTCTGTTAGAACCTGC 59 NA Rattus norvegicus 81 Tmem241 ENSRNOG00000023412 ENSRNOT00000029274 3 1 1 81 18 3497740 3504324 CTACATATTCAGCATGGTACTCC 59 3489587 3489606 CAGGAATGGAAAGTCCATGG 59 NA Rattus norvegicus 81 AABR07028886.3 ENSRNOG00000055012 ENSRNOT00000081249 1 1 1 80 17 89807469 89807489 TTACACAAAGGATGCAATGCC 60 89803817 89807428 GGCAACAGTGATACATGTCC 59 NA Rattus norvegicus 81 LOC100910500 ENSRNOG00000046648 ENSRNOT00000075355 3 1 1 60 15 35889932 35889950 GTACCCATGCTGAATCCCT 59 35889973 35889992 TCAAGGCAATACTGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cideb ENSRNOG00000020377 ENSRNOT00000027612 1 1 1 80 15 34441139 34443655 AACTGCTAGATAAGGAGGATGG 59 34441080 34441099 CCATCAAGCATGTGTCATCC 59 NA Rattus norvegicus 81 Cdca3 ENSRNOG00000015529 ENSRNOT00000020803 3 1 1 80 4 157348920 157348938 CAACAAGCATGTGTCTCGG 60 157348981 157349542 GAGCTCTCCACCTGAATAGG 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 3 3 3 80 3 21850539 21850562 AGGTCTCAAGTATGAACTCATCTC 60 21844843 21850503 TGTCCATCTACTTCTACCTCCA 60 NA Rattus norvegicus 81 Bcl2l10 ENSRNOG00000009308 ENSRNOT00000012409 1 1 1 81 8 82289098 82289116 ACAATCGACTCACAGGACG 60 82294132 82294151 GGGTTCTTGAAGAATTGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 3 2 2 81 5 120639643 120639661 GTTCTGGCCATCAATTCCA 58 120639704 120642140 CAGCATTCACTTTACTCATGG 57 NA Rattus norvegicus 81 Mc3r ENSRNOG00000004451 ENSRNOT00000005871 2 1 1 60 3 170253299 170253317 TATCAACAGCGACTCCCTG 59 170253340 170253359 GAAGATGTTGTCCATGTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap1g2 ENSRNOG00000025619 ENSRNOT00000033977 1 1 1 80 15 33762109 33762128 GGTGTATTGGCGAGTATGGA 60 33761973 33762066 CGTCCTCTTCTTCCACCTG 60 NA Rattus norvegicus 81 Olr60 ENSRNOG00000050496 ENSRNOT00000049401 1 1 1 60 1 167892429 167892451 TCTATGGACTCTATGTGGTTCTG 59 167892391 167892410 GACATGACAATAAGCGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Casc4 ENSRNOG00000016357 ENSRNOT00000044158 1 1 1 81 3 113860634 113860655 GAAAGTCATCAAACCATATCCC 57 113860695 113861917 TCTGGTTTAGATGTGAACCTG 58 NA Rattus norvegicus 81 Edaradd ENSRNOG00000002624 ENSRNOT00000003535 3 1 1 80 17 90813461 90814512 TTTATCCTTTGCCATGTCAGAC 59 90820686 90820705 GAAGTGACTGCATCACACTC 59 NA Rattus norvegicus 81 RGD1564937 ENSRNOG00000030962 ENSRNOT00000068366 1 1 1 80 8 55193516 55193534 TGATAGGCAACTGGAACCA 59 55192353 55193472 AGTGTCCAAACTGGGAAGG 60 NA Rattus norvegicus 81 LOC499573 ENSRNOG00000033449 ENSRNOT00000041334 2 1 1 80 2 95084405 95098619 ATGAAGAATTTGGACAGTGCTC 59 95084346 95084364 TAGCTGCTGTGAGGTTCTG 59 NA Rattus norvegicus 81 Slitrk2 ENSRNOG00000011562 ENSRNOT00000015401 1 1 1 109 X 151103929 151104441 CTCCTGATGTGTTTGCCTG 59 151104514 151104532 GATCTGTAAGATCCCGGCC 60 NA InUTR Rattus norvegicus 81 Olr850 ENSRNOG00000057655 ENSRNOT00000079848 2 1 1 60 5 69516491 69516511 TCTCTATGTATGCGAAACCCA 59 69516451 69516471 GAAATTCCGAACTTGTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chchd1 ENSRNOG00000009297 ENSRNOT00000012372 3 1 1 84 15 4026539 4026559 CTATCCTGAAACCCAACAAGC 59 4026383 4026493 GTGATACAAGTTGCCTCGC 59 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 2 2 2 80 3 120729877 120729896 GAGTTGTGACAAGTCAACAC 57 120729939 120749189 CTTATGGAAGCCATTGCAC 57 NA Rattus norvegicus 81 Foxr1 ENSRNOG00000029089 ENSRNOT00000049125 2 1 1 80 8 48754980 48756226 ACAACTTCACTCGAGAGCA 59 48754918 48754938 AACAGAGATTGTGACGAACTG 59 NA Rattus norvegicus 81 LOC499136 ENSRNOG00000014455 ENSRNOT00000019364 1 1 1 158 1 97785146 97785164 CACAATGGAGTACTACGCA 57 97784023 97784041 ACACGTAGCTTAGGAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867,ENSRNOT00000088697 3 2 2 81 10 94474999 94475215 AACTCCGGATCTTTGAATTCTC 59 94475257 94475275 CTCATAGTCTCGGCCATCC 59 NA Rattus norvegicus 81 Aadacl4 ENSRNOG00000037030 ENSRNOT00000034394 2 1 1 86 5 162681757 162681775 CAGTGTCCTCAGAACTCCG 60 162680240 162681709 ACAGATTGTGGTAACTGTCCA 59 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 2 2 2 86 4 52162194 52162212 ATAGGAGAAAGTGCTGCGT 59 52162261 52164311 CTTTGTACAGTTCTCCGCAG 59 NA Rattus norvegicus 81 Dqx1 ENSRNOG00000008062 ENSRNOT00000011002 1 1 1 80 4 113891155 113891362 CAAGAGCACCCAGATTCCT 59 113891405 113891424 TGAGTGACTGTAACCTGTCC 59 NA Rattus norvegicus 81 LOC100912182 ENSRNOG00000031022 ENSRNOT00000048198 1 1 1 60 18 1505194 1505215 GGACTTTCTGTAAGAAATGTGG 57 1505235 1505254 CCCTTCTTATACTGGGTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr721 ENSRNOG00000006654 ENSRNOT00000008690 1 1 1 60 3 78725476 78725496 CCATTCAGATCCTCTTCACAG 58 78725436 78725455 AAGTGGTCTATGACATTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glra3 ENSRNOG00000049792 ENSRNOT00000075026 3 1 1 80 16 37677228 37691118 TCAGACACGGATGATGAGG 59 37677166 37677185 ATCCTTTGCTTGAAGACAGG 58 NA Rattus norvegicus 81 Lrrc3b ENSRNOG00000005857 ENSRNOT00000007672 1 1 1 60 15 11299144 11299164 TACTACGTGAGGCAGAATCAG 59 11299184 11299204 GCAGGGATTTCAAGTATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 3 1 2 81 5 59067487 59067505 TCCTTCTGCCTTCTTCTGG 59 59067548 59067643 GGTGCAACACAACATACTCAG 60 NA Rattus norvegicus 81 Nps ENSRNOG00000036653 ENSRNOT00000054896 1 1 1 60 1 207508585 207508604 GTGATTTGGAGTTATCCGGT 58 207512023 207512043 TGAGAAAGTAATCAGGCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Sord ENSRNOG00000017291 ENSRNOT00000023350 1 1 1 80 3 114201219 114202393 TCAAGTAGTGGTGATTGACCT 59 114202434 114202453 GCAACCTGGATGGTAAAGTC 59 NA Rattus norvegicus 81 Glis1 ENSRNOG00000000138 ENSRNOT00000032433,ENSRNOT00000075624 1 2 2 91 5 127165230 127213365 ACAAGTGCATGTTCGAAGG 59 127213420 127213438 GTATGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Rps15-ps2 ENSRNOG00000043026 ENSRNOT00000067441 2 1 1 65 7 2961562 2961580 CAAGACCTTCAACCAGGTG 58 2961452 2961470 ATAAATCGGGAGGAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 3 3 7 162 15 34668518 34668861 AGCTCAGTGTAATGGAAGCA 60 34668153 34668393 TTTGCGTTCCAACTTCAGG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 3 5 7 80 15 34644701 34645132 CTACTGGTAAGGGAGACTCAG 59 34644641 34644662 CAGTACACAAGCGATAACTGAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 1 3 4 84 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000077034,ENSRNOT00000076521,ENSRNOT00000087859 2 3 4 93 X 115585309 115586071 AGATCCTCAGGAGAGTGCT 59 115586928 115586946 TGGCTTTCCAGGATAACGA 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 3 3 3 81 18 73260153 73260176 CTTAATAGAGCAGAGACAAGTCAG 59 73260216 73263202 GTGGGTTTGAACTCCTGTG 59 NA Rattus norvegicus 81 Plk5 ENSRNOG00000034102 ENSRNOT00000042204 2 1 1 93 7 12218979 12218998 GAAGTGCGCTACTACTTTCG 59 12218167 12218926 AGAAATTACTGGGTTTCAGGTC 58 NA Rattus norvegicus 81 Med15 ENSRNOG00000001877 ENSRNOT00000002568 2 1 1 81 11 87604406 87628444 TCAGCCAAATTGAGGATGC 59 87604343 87604361 AGGAACACATGACTCTCCA 58 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330,ENSRNOT00000065073 1 2 2 66 9 113355577 113358499 GAGTTCTTGGATACAGCCC 58 113355529 113355547 TATGAAGCATGTTGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330,ENSRNOT00000065073 2 2 2 66 9 113355576 113358499 GAGTTCTTGGATACAGCCCA 60 113355529 113355547 TATGAAGCATGTTGCCGAC 59 NA DesignNoJunction Rattus norvegicus 81 Lgr6 ENSRNOG00000005093 ENSRNOT00000006969 3 1 1 80 13 51849360 51849379 TCTACATAACAACCGCATCC 58 51834721 51849320 TAGTTCAAGTCTAGTGTCTCCA 58 NA Rattus norvegicus 81 Cdh2 ENSRNOG00000015602 ENSRNOT00000021170 2 1 1 80 18 8200861 8200882 GATAACAGACCTGAGTTTCTGC 59 8197555 8200821 AGTCATCACATACGTCCCAG 59 NA Rattus norvegicus 81 Magoh ENSRNOG00000012778 ENSRNOT00000017422 2 1 1 80 5 127484224 127484242 TGACGACAGTGAGATCACC 59 127484286 127485280 ACAATTTCGAGTTCCTGCC 59 NA Rattus norvegicus 81 Olr250 ENSRNOG00000028802 ENSRNOT00000041144 1 1 1 60 1 172348656 172348677 TCCTCAGAATTGTCCTCTTCAC 60 172348697 172348716 TTTCCAGAAACAGTCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdpn ENSRNOG00000014961 ENSRNOT00000020316 3 1 1 81 5 161954229 161954249 CATGAGAGTACAACCACTGTC 59 161950720 161954189 CTGCGTTATCTCTATTGGAGTG 59 NA Rattus norvegicus 81 Dnah9 ENSRNOG00000004171 ENSRNOT00000005583 2 1 1 80 10 52531648 52537019 TCCAAGATCAGCTTGTAGAC 57 52531587 52531605 GGGAAGGAAATTTGACCGT 58 NA Rattus norvegicus 81 Nsun5 ENSRNOG00000001450 ENSRNOT00000001970 1 1 1 108 12 24346688 24346816 AACTTCCAGAATCTGAAGCAG 58 24346600 24346618 TCTTCTCAGCACGAAGGAG 59 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991,ENSRNOT00000002981 2 3 3 80 14 34456753 34456774 CTGGTAATGCTAGAAAGATGGA 58 34456812 34459691 CAGTGATCTCTTTATGTTTGCG 58 NA Rattus norvegicus 81 Ptprv ENSRNOG00000005277 ENSRNOT00000007597 1 1 1 80 13 51940456 51940631 GGAATTTGAGGAGTTGAAGGA 58 51940396 51940415 CGGTTCTTGATGATGTTGTC 57 NA Rattus norvegicus 81 LOC100362339 ENSRNOG00000018471 ENSRNOT00000024916 2 1 1 61 17 54058215 54058233 CAAGATCTACGGAGGACGG 59 54058258 54058276 TAGAGCCTCTGCTGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Odf4 ENSRNOG00000004225 ENSRNOT00000005667 3 1 1 80 10 55511499 55511798 CTGAGCTTCTGTGAAGTCAC 59 55511438 55511458 CTTCTTCAGCTCGTAGATCCA 59 NA Rattus norvegicus 81 AABR07028245.1 ENSRNOG00000061031 ENSRNOT00000073575 1 1 1 60 17 62263189 62263207 TCTTCTGGATCGGCTTGTG 60 62263231 62263249 GTAGAGACAGTGGCGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560436 ENSRNOG00000025065 ENSRNOT00000038013 3 1 1 80 5 142935451 142936909 CTAACTGAGAGGCTAGCCA 58 142936951 142936971 CTCATAGGTCTGAAACACCTG 58 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 1 2 2 80 9 100961269 100961290 CTTTGATGAAGTCATCCTGTCC 59 100961331 100963319 TGGCAAACCAGAATTCCAG 58 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 2 2 2 88 5 157504124 157517495 CTTGGAAACCTTGCAGGTG 59 157504054 157504072 CCTTCCTGCTATGCTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 1 1 2 188 4 161727352 161728159 GGTTAGGAAAGAGGGTCCC 59 161728500 161728989 AAAGGTGGCCTACCTTGAG 59 NA Rattus norvegicus 81 Coil ENSRNOG00000000244 ENSRNOT00000037693 3 1 1 80 10 76328922 76328940 TAGAAGCTCTGAGAGCCAG 58 76328982 76329128 TCTACTGGATTCTGGATCACC 59 NA Rattus norvegicus 81 Eif3d ENSRNOG00000005804 ENSRNOT00000029753 2 1 1 80 7 119191953 119192556 CAATTCTGACTTTGACCTCCTG 59 119191894 119191913 GGTGAGTTGAAGGAATTGCC 60 NA Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 2 2 2 80 8 117592553 117592571 GCATGAAGTGTCATCAGCA 59 117592612 117598495 CCAGCAAGATGAATTTGTACTG 58 NA Rattus norvegicus 81 Mir6320 ENSRNOG00000046753 ENSRNOT00000075735 2 1 1 60 15 42959721 42959739 AGTGCTGAGATTACAAGGC 58 42959679 42959697 TACAAGCATGTTCAGCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 En2 ENSRNOG00000006846 ENSRNOT00000008951 2 1 1 81 4 439338 439356 CTGCACACGTTACTCTGAC 59 442529 442547 CTTGTCCTCTTTGTTCGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mir465 ENSRNOG00000040404 ENSRNOT00000062157 2 1 1 60 X 151297414 151297432 ATTTAGAACGGTGCTGGTG 58 151297372 151297393 CTTACTCTACTCAGAAAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512,ENSRNOT00000087592 2 3 3 80 9 119105430 119110051 TCTATTGGGATACAGGTGGAC 59 119110093 119110111 CACGGACTGGAACTTACTG 58 NA Rattus norvegicus 81 Arl8a ENSRNOG00000005988 ENSRNOT00000008164 1 1 1 80 13 51980462 51980480 GAATCTGTCCGCTATCCAG 58 51980523 51980948 AGGGTGATGTCTATGTTGTC 57 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 2 2 2 80 11 84045612 84045630 CTTTGGCAAGATCAGCGAG 59 84044725 84045569 CCAAAGTCCAGAATCTCGTC 58 NA Rattus norvegicus 81 Gabrb1 ENSRNOG00000002327 ENSRNOT00000003170 1 1 1 80 14 38659949 38663779 GAGTCGCCCTAGGAATCAC 60 38659887 38659906 AAGGGATCTTTGGCAGAGTC 60 NA Rattus norvegicus 81 Oxgr1 ENSRNOG00000037884 ENSRNOT00000057564 1 1 1 60 15 105402585 105402603 CTTCCCGTCATCTACAGCA 59 105402543 105402561 AAATCGCCACCGTATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000056933,ENSRNOT00000027987 1 2 2 80 1 87187795 87187909 CCTACCTTCACCAGGACTG 59 87187953 87187971 GGTCTGGAGCATTGATGTC 58 NA Rattus norvegicus 81 Sema4f ENSRNOG00000006784 ENSRNOT00000009269 2 1 1 80 4 113760615 113760634 CCATTGTCAATGCCTCTCAC 59 113756139 113760574 AACTGGACACATCAATAACCC 58 NA Rattus norvegicus 81 Ap1m2 ENSRNOG00000043093 ENSRNOT00000066340 1 1 1 80 8 22329252 22329356 GTTAACCTTCTGGTGAATGC 57 22329191 22329209 AGACAGAAACACCTTCAGC 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 2 3 3 80 12 30069029 30069048 TATGATCCATACGCCAATCC 57 30051547 30068986 TCCTTTATGGACCCTCCTG 58 NA Rattus norvegicus 81 Aspg ENSRNOG00000012843 ENSRNOT00000017454 3 1 1 92 6 136691054 136691073 TATCCACGAACTGTGGAGTG 60 136691128 136691880 AAGAACAGGCAGACCTCAG 59 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582,ENSRNOT00000040306 3 2 2 80 3 104122225 104123604 CATGATGACGTGCTACCTC 58 104122163 104122181 GCGGGATCTTCAATTTCGT 59 NA Rattus norvegicus 81 Hmgn5b ENSRNOG00000029078 ENSRNOT00000048744 1 1 1 87 1 124479697 124479965 ACTGTCTGCTATGCCTGTG 60 124482147 124482166 CACGACATTTGTGGTCTTCG 60 NA Rattus norvegicus 81 Gja10 ENSRNOG00000006478 ENSRNOT00000008469 1 1 1 60 5 47836238 47836259 AAGAAGTTATACCTCAAAGCCC 58 47836199 47836217 TTTGTTGCTCCTCCAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car15 ENSRNOG00000037983 ENSRNOT00000000312 1 1 1 80 11 87761483 87761503 CATCTTTCACGGCTATGACTC 59 87760999 87761441 TGTACTCGCAGTAGCACTG 60 NA Rattus norvegicus 81 Car15 ENSRNOG00000037983 ENSRNOT00000000312 3 1 1 82 11 87761485 87761505 TTCATCTTTCACGGCTATGAC 59 87760999 87761441 TGTACTCGCAGTAGCACTG 60 NA Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000056434 1 1 2 97 9 105545603 105545847 CGATAGAGATCCTTGCGCT 60 105545524 105545542 TTCAGGGTGCTTGATAGCC 60 NA Rattus norvegicus 81 Caap1 ENSRNOG00000007299 ENSRNOT00000010173 1 1 1 80 5 113500780 113522523 TAATCAGTCAGCAAGATACCTG 58 113500721 113500741 GCTTTGATTCCAAACCTTCTG 58 NA Rattus norvegicus 81 LOC100912252 ENSRNOG00000042206 ENSRNOT00000068160 1 1 1 90 17 5359167 5359185 TCTCCTGTCTTCTGTTGCC 59 5359239 5360014 TAGGAACTGCTTTCCTGGG 59 NA Rattus norvegicus 81 Rn60_X_0746.1 ENSRNOG00000051044 ENSRNOT00000075847 3 1 1 60 X 73790356 73790375 ACATGTACAAGGGATACTGC 57 73790397 73790416 ACACTCATCAATCACAAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562758 ENSRNOG00000048704 ENSRNOT00000043709 1 1 1 60 18 63825259 63825279 ATGCTCCAGTATGACTCTACC 59 63825219 63825237 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051741.1 ENSRNOG00000057548 ENSRNOT00000044699 1 1 1 60 3 20641680 20641698 AGTCTCCTTCACTCCTGTC 58 20641722 20641740 CTTGCTTTGCAGCTGAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl40 ENSRNOG00000049686 ENSRNOT00000071159 3 1 1 80 11 86279230 86280436 CTTGGATAAATCAAGACAGCG 58 86280478 86280496 CACCTCTTCAGCAGAAGAG 58 NA Rattus norvegicus 81 Mir181d ENSRNOG00000036417 ENSRNOT00000054529 1 1 1 63 19 25290101 25290119 TTCATTGTTGTCGGTGGGT 60 25290056 25290074 CCACAGTGACATTCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr18 ENSRNOG00000012379 ENSRNOT00000016733 1 1 1 80 7 12561656 12561675 GGCAAAGAACCTAGCTACCT 60 12561511 12561614 GCCTAGCATGTTCTTCTCCA 60 NA Rattus norvegicus 81 Tor4a ENSRNOG00000009369 ENSRNOT00000012406 1 1 1 60 3 2409760 2409778 TCACCATTTCCACAATGCT 58 2409718 2409736 TGTGATCTCTATACCGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 3 2 6 80 10 53781376 53781394 CTATGTGAAAGCAACCGTG 57 53781437 53781551 TTAACTGTGACAGTAGCTCC 57 NA Rattus norvegicus 81 Usp50 ENSRNOG00000011401 ENSRNOT00000015238 3 1 1 80 3 119225369 119234179 CAGTTGTGAACCACTTTGGA 59 119225308 119225328 TATACCAGGCCTGAGTTACTG 59 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639,ENSRNOT00000089665 1 2 2 80 16 39985835 39987122 CTTCTTCAACATGAAGCTACTCC 60 39985777 39985799 CCTTTGTCTTCCTATGTAGTTGC 60 NA Rattus norvegicus 81 Tprn ENSRNOG00000010896 ENSRNOT00000014489 2 1 1 82 3 2486815 2486836 AAATCCTTCACAGTTCTCTTGC 59 2486879 2486984 GTGTAGCTGGACAGACCTG 60 NA Rattus norvegicus 81 Herpud1 ENSRNOG00000018796 ENSRNOT00000025559 2 1 1 80 19 11050650 11050989 AGTACTACATGCAATACTTGGC 59 11050591 11050610 CCACAGGTATTTCTTGTGCA 59 NA Rattus norvegicus 81 Tbc1d19 ENSRNOG00000003003 ENSRNOT00000004030 1 1 1 80 14 59498121 59498139 CAGAGACCCGAAATCAGAC 58 59497069 59498078 AAGTTTCTTCTCCCAACCTG 58 NA Rattus norvegicus 81 Tbc1d19 ENSRNOG00000003003 ENSRNOT00000004030 3 1 1 80 14 59487111 59487135 GTATAGATGATTCTACACAAGTGCC 60 59484808 59486216 GCTGCGCTAGAACTTTCTG 59 NA Rattus norvegicus 81 Surf2 ENSRNOG00000005167 ENSRNOT00000006889 1 1 1 80 3 5467493 5467966 TAAACTCAGGAAGAAGGAGC 57 5468008 5468027 AAGGAACTGAAGTTCTTGGG 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 2 4 7 82 1 83764531 83765550 TTCCATTGGAAAGCGATTCTG 59 83765594 83765612 AGTTCTGCAAGATGGTGGT 59 NA Rattus norvegicus 81 AABR07051548.1 ENSRNOG00000045966 ENSRNOT00000046489 2 1 1 119 3 16750191 16752334 CTATGGCCTATTTGGCTGTG 59 16750091 16750109 CTGGTTTCTGCTGGTACCA 60 NA Rattus norvegicus 81 Brix1 ENSRNOG00000018021 ENSRNOT00000024285 3 1 1 84 2 60452181 60452398 CAGTCTCCAAACATGCATCG 60 60452116 60452137 TCTGAACATCTTTGACTTGCTG 59 NA Rattus norvegicus 81 Olr704 ENSRNOG00000031282 ENSRNOT00000041001 3 1 1 60 3 78408832 78408851 CTTGCTTCCTCCTATTGGTG 58 78408791 78408809 AGTTGAGCTACAGAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp2 ENSRNOG00000013862 ENSRNOT00000018549 3 1 1 80 3 119777599 119777958 CCTATCTATGACCAGGGTGG 59 119778000 119778019 CTGAAGATCTGAGGAGTGGT 59 NA Rattus norvegicus 81 Grid2 ENSRNOG00000006174 ENSRNOT00000064696 2 1 1 80 4 94715629 94715647 GACACTCTCAGAAGAGCCA 59 94715689 94830786 CAGATTAGTCTCCACCACCTC 60 NA Rattus norvegicus 81 Olr717 ENSRNOG00000046433 ENSRNOT00000048787 3 1 1 60 3 78639677 78639696 ACACTTACTTCCTTGGGCTC 60 78639636 78639657 AAGACCACTACAGATATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2c11 ENSRNOG00000052810 ENSRNOT00000088853 3 1 1 80 1 257989976 257989995 GCACAGAAACAACAAGTACC 58 257990038 257999470 CCTGGACTTTAGCTGTGAC 58 NA Rattus norvegicus 81 Thy1 ENSRNOG00000006604 ENSRNOT00000008685 3 1 1 81 8 48384663 48385343 CTCCTGCTTTCAGTCTTGC 59 48385388 48385406 GTCGAAGGTTCTGGTTCAC 59 NA Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 3 2 2 80 10 110533804 110535466 AACCCTAAAGGCCTCTGTG 59 110533742 110533760 TACATGGCCAGTGTGAGTG 60 NA Rattus norvegicus 81 Rexo4 ENSRNOG00000027867 ENSRNOT00000042289 1 1 1 80 3 5503486 5503504 CTGTTCCTTGAACATCCGA 58 5502659 5503443 CCGTGCACTCTTTACTAGAC 58 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530,ENSRNOT00000087569 1 2 2 82 15 60014648 60032060 GAAGATTTCCTCTCCAAGCT 57 60014585 60014603 AAATGAGACTGGCTTCTCG 58 NA Rattus norvegicus 81 Smad5 ENSRNOG00000022870 ENSRNOT00000016704 3 1 1 80 17 8316893 8318002 TATCTAGCAGAGATGTTCAGC 57 8316833 8316854 GGTTGTTCAGTTCATAGTACAC 57 NA Rattus norvegicus 81 Mfap3l ENSRNOG00000011775 ENSRNOT00000015759 2 1 1 85 16 32753180 32753201 TCATGTTACTCTACACATCCTG 57 32752408 32753137 TGATCAAGGATCTAAGTTCCTG 57 NA InUTR Rattus norvegicus 81 Rn60_X_0718.1 ENSRNOG00000051198 ENSRNOT00000076206 3 1 1 60 X 70844340 70844360 GCATCAAGAAACCCTAGTCAC 59 70844382 70844400 AGGAACTTGGAGTCAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100158225 ENSRNOG00000007436 ENSRNOT00000047734 1 1 1 88 10 13589511 13589694 AACTCCAGATGGCTTCAGG 59 13589441 13589459 TGTACAGGCCTTTCTCAGG 59 NA Rattus norvegicus 81 LOC100158225 ENSRNOG00000007436 ENSRNOT00000047734 2 1 1 90 10 13589512 13589695 AAACTCCAGATGGCTTCAG 57 13589440 13589458 GTGTACAGGCCTTTCTCAG 58 NA Rattus norvegicus 81 Hmgb2 ENSRNOG00000013167 ENSRNOT00000017635 2 1 1 80 16 36079017 36079384 AGATGGAAGACCATGTCTGC 60 36078956 36078974 CTCCCTGTCATAACGAGCT 59 NA Rattus norvegicus 81 Cbln2 ENSRNOG00000013654 ENSRNOT00000018682 1 1 1 81 18 83781113 83781235 ACAGACAAACTATCCAGGTCAG 60 83781276 83781295 CTGGTAACATCCTGGTCTCC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000065953 1 1 2 84 3 6780896 6780914 AGATGAAAGGCCTGGAGTC 59 6780960 6782363 TTAAGTTAGCCCTTGAACTGC 59 NA InUTR Rattus norvegicus 81 Fam131a ENSRNOG00000046177 ENSRNOT00000075606 1 1 1 84 11 83900776 83900962 CCCTGCATGGTATTTCCCA 60 83900710 83900728 TCGATAAGGTGAGCCACAC 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 3 2 3 83 2 261397313 261399390 TTAATTCACTCCGGTGGCT 59 261397248 261397266 TTCACCAAGTGGTAAGGCT 59 NA Rattus norvegicus 81 Mir17 ENSRNOG00000035657 ENSRNOT00000053780 2 1 1 60 15 100179879 100179899 GTCAGGATAATGTCAAAGTGC 57 100179921 100179939 TTCACTGCAGTAGATGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 1 1 1 68 10 75190726 75190744 CTCAGGAACCAGGAGATGC 60 75190659 75190694 ATCCCTGTTGCAAATTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 1 1 1 64 1 13166123 13171412 AAATGCCGATGGGAAACTG 59 13166077 13166095 GATTGGCACATCTGTCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1568 ENSRNOG00000046589 ENSRNOT00000074815 1 1 1 60 11 85031295 85031315 ATGATGATAACAGGAGCTTGG 58 85031335 85031355 CATATCCAGTATGAGCACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 1 2 2 81 20 32296563 32296581 TATGAACGCAGGTCAGGTG 60 32294811 32296518 GGGAACAGCAATACCTGGA 59 NA Rattus norvegicus 81 RGD1311892 ENSRNOG00000025948 ENSRNOT00000035404 3 1 1 112 13 53094698 53095450 CTGGAGGAAGAAGACTCCC 59 53094604 53094622 GATTCAGGTCCTGTTGGCT 60 NA Rattus norvegicus 81 Itga10 ENSRNOG00000021217 ENSRNOT00000028812 2 1 1 80 2 198776612 198777097 AGAGCAGATACAGGTAGGAC 58 198777140 198777158 TCCTTTGTCCGGAAATCTC 57 NA Rattus norvegicus 81 Rn60_11_0375.6 ENSRNOG00000051288 ENSRNOT00000077019 1 1 1 60 11 33857931 33857950 GGGCAGTTGATAGAGAAGAC 58 33857973 33857991 AGCCTTGGATCATACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912537 ENSRNOG00000047112 ENSRNOT00000074429 1 1 1 80 1 259103202 259103663 AGTCCTGAAGGTTCCAAGAG 59 259102608 259102626 CTGGTTTGTGAGGCAAGTG 59 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 1 2 2 80 4 153909022 153909323 ACTAGACAGCCAGTTTGTG 57 153909367 153909385 TTCTTCTTACGGAACACCC 57 NA Rattus norvegicus 81 Pcdhga9 ENSRNOG00000030352 ENSRNOT00000044434 1 1 1 60 18 30887245 30887265 AGGTTACTTACTCTTTGGTGG 57 30887286 30887305 GAGATGTAGGAGGTGAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029195.1 ENSRNOG00000003401 ENSRNOT00000004583 1 1 1 80 10 12871719 12871816 AAGACAAGGAGTGGATCCC 59 12871657 12871676 GGTAGATCTCCTCCAAGGAC 59 NA Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150,ENSRNOT00000090982 1 2 2 60 17 89881018 89881038 CTGAGTCTGAGGAAGAAGAGG 59 89880978 89880996 TCACTGCCACTCTGTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150,ENSRNOT00000090982 3 2 2 60 17 89880770 89880791 TCACCAAGATACAAACGAAGAC 59 89880731 89880751 ACTTGTCAGATGATGTACTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083,ENSRNOT00000082627 1 2 2 80 2 104777286 104777306 TTACTGACAGCACATTCAGAG 58 104777348 104778619 CATGAATCAGTGGACCGAG 58 NA Rattus norvegicus 81 AC103179.2 ENSRNOG00000047174 ENSRNOT00000074051 2 1 1 60 18 29973907 29973925 CTGTCATCGCACTCATCAG 58 29973948 29973967 CAAGTAACCTGCCCATTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000047759 ENSRNOT00000075350 1 1 1 60 1 121185932 121185951 GGCTGCTGGTTATATTCCAG 59 121185891 121185909 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acp6 ENSRNOG00000017494 ENSRNOT00000043194 3 1 1 80 2 199296561 199296579 TCCACCAACATGTTTCGGA 60 199296620 199298382 GATGACAGATTCTTTCTGACGT 59 NA Rattus norvegicus 81 RGD1564550 ENSRNOG00000032558 ENSRNOT00000042211 3 1 1 60 10 78416948 78416966 GGCCAAGATTAAGGCTCAG 58 78416990 78417008 CAGTTGTTTCAGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspo ENSRNOG00000010549 ENSRNOT00000014089 3 1 1 152 7 124460411 124468360 AGGCTGTGGATCTTTCCAG 59 124468476 124468494 TCTGCAAGCTAGCATACCA 59 NA InUTR Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 3 2 2 80 16 8318690 8318709 CTCCATACGTACCCAGTACC 59 8318751 8320048 TTCTGGCAGAAGTCTGACTG 60 NA Rattus norvegicus 81 Rn60_11_0375.5 ENSRNOG00000051106 ENSRNOT00000075943 2 1 1 60 11 33840904 33840924 CAAGGATTACACGGTTCAAGG 59 33840944 33840964 CCCATCTTCACAGAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tob1 ENSRNOG00000002828 ENSRNOT00000003780 3 1 1 60 10 81914125 81914143 CGTTTGAGGTTTCCTACCA 57 81914167 81914185 TCATCTACGTACAGCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1006 ENSRNOG00000032428 ENSRNOT00000051694 3 1 1 60 7 6097214 6097232 TGGATGTGATGCAAACCCT 60 6097252 6097274 CTGCTCAATTAACCACGTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_11_0339.1 ENSRNOG00000056154 ENSRNOT00000088768 2 1 1 60 11 33830281 33830301 CAAGGATTACACGGTTCAAGG 59 33830321 33830341 CCCATCTTCACAGAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx37 ENSRNOG00000022171 ENSRNOT00000030823 2 1 1 80 12 36603062 36603212 CCCAGTCATCAAGGTTGAG 58 36603255 36603274 CCACTGTAGTCATCCAATGG 58 NA Rattus norvegicus 81 Smpd4 ENSRNOG00000001875 ENSRNOT00000043545 1 1 1 80 11 87538687 87538705 TACCGACTCAATGTGTCCA 58 87538748 87541531 GAAGGACTCTTGATAGGCGT 59 NA Rattus norvegicus 81 Lsm3 ENSRNOG00000008733 ENSRNOT00000011557 1 1 1 80 4 123162986 123165407 AGGCAGATTACATGCTTACGA 60 123165446 123165467 TCAATCTCTATCGTCGTCACAG 60 NA Rattus norvegicus 81 Taar9 ENSRNOG00000026096 ENSRNOT00000038523 1 1 1 60 1 22319960 22319979 TGGTGTTTCTCTATGGTCGG 60 22320001 22320020 CCCTCTATCTTCCTAGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Haghl ENSRNOG00000019612 ENSRNOT00000026536 3 1 1 80 10 15153443 15153463 GATGATGTACCTACTGTGCCT 59 15153064 15153401 GACTGGATCCTCTGTCACC 59 NA Rattus norvegicus 81 Efr3a ENSRNOG00000025528 ENSRNOT00000045357 1 1 1 80 7 106598551 106599140 GCCATTGCTTTACAGGACAG 60 106599183 106599201 AACCAGTGCCATAATCCCA 59 NA Rattus norvegicus 81 Cnn2 ENSRNOG00000043044 ENSRNOT00000065093 2 1 1 85 7 12787433 12787451 TTCAGAGAAACAGGAGCGA 59 12787500 12787615 ATTTGTTGGTGCCCATCTG 59 NA Rattus norvegicus 81 Cldn9 ENSRNOG00000003654 ENSRNOT00000004848 3 1 1 102 10 13003523 13003541 CTCCTCTGCTGTACGTGTC 60 13003439 13003458 TCTTATCAAGTCCCGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729,ENSRNOT00000013459 2 2 2 80 5 129070498 129071685 GAAATATTGATGCTGCTGTCC 58 129071727 129071745 AGCACATGTGGTGAAACTG 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855,ENSRNOT00000081679 2 2 2 80 8 17485177 17485195 GGATTGACCCTACGACTGG 60 17485013 17485134 GTTTCCAACCTCCATTCACC 59 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330,ENSRNOT00000056058 1 2 2 80 4 157147366 157147388 GGCTCAACATCATTCTATTCCAC 60 157146766 157147326 ACAGTCCACAGGTTGACAC 60 NA Rattus norvegicus 81 Ifna4 ENSRNOG00000033823 ENSRNOT00000046207 1 1 1 60 5 106923035 106923054 CCTCCCACTCTCAATCTCAG 59 106922994 106923012 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin3b ENSRNOG00000012562 ENSRNOT00000017064 3 1 1 82 7 12770115 12770209 TTTGCTATCGAGGGCTACG 60 12770252 12770273 TTGTACCTACTGATGAACTCCG 60 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000047176 ENSRNOT00000075546 1 1 1 89 1 82952112 82952130 CTCAGAGAAGCCATGGGAG 60 82950754 82952059 ACAGGTCAGCGTATCTGAG 59 NA InUTR Rattus norvegicus 81 Rhot2 ENSRNOG00000019930 ENSRNOT00000027083 1 1 1 80 10 15208703 15208724 AGGATGTAAAGAGGGTAGTGTG 59 15208568 15208662 GGAAGAGGAAGCCTTCCAG 60 NA Rattus norvegicus 81 Olr1490 ENSRNOG00000050244 ENSRNOT00000072840 1 1 1 60 10 60392202 60392225 CTTATGATGATTATCTTGGGTGGG 59 60392241 60392262 ACACAACAATGAGGAAGAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5a1 ENSRNOG00000017032 ENSRNOT00000022892 1 1 1 80 18 74162288 74162306 TCATTGAAACACAGGCTGG 58 74162349 74163019 CCAAGAAGATCTGTCCATCG 58 NA Rattus norvegicus 81 LOC100911837 ENSRNOG00000049255 ENSRNOT00000071462 1 1 1 80 11 85864913 85865419 CATGGATATTTCCTGGACTCTG 58 85864854 85864872 GAGAAATCAAGGAACGCCA 58 NA Rattus norvegicus 81 LOC100911837 ENSRNOG00000049255 ENSRNOT00000071462 2 1 1 80 11 85864915 85865422 CATCATGGATATTTCCTGGACTC 59 85864857 85864875 AAATCAAGGAACGCCACAG 59 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072692,ENSRNOT00000072396 3 2 2 80 5 129276078 129277265 AAATATTGATGCTGCTGTCCG 60 129277306 129277325 TAGCACATGTGGTGAAACTG 59 NA Rattus norvegicus 81 Clec1a ENSRNOG00000060460 ENSRNOT00000091602 3 1 1 80 4 163200653 163200672 AAACTCACTGAAACTCTGCA 58 163197089 163200610 ACTGCATCTATGTCCTCCA 58 NA Rattus norvegicus 81 Btbd6 ENSRNOG00000014693 ENSRNOT00000019768 2 1 1 80 6 137786764 137786784 GATCTTGCAGAAGTCAAGTCC 59 137786820 137786992 GTACATGTACTTTAACAAGACCAGG 60 NA Rattus norvegicus 81 Eif2s1 ENSRNOG00000009432 ENSRNOT00000013375 2 1 1 80 6 102064010 102064031 TGATGACAAGTACAAGAGACCT 59 102064067 102067900 CTATCCAAGATAGATGGGTCTGAG 60 NA Rattus norvegicus 81 Cetn4 ENSRNOG00000026162 ENSRNOT00000065384 2 1 1 80 2 124046638 124046901 GAAGGTTCTGAATTGTGTCCT 58 124046399 124046418 CCTTCCTTGTCGATTTCAGG 59 NA Rattus norvegicus 81 Zadh2 ENSRNOG00000016239 ENSRNOT00000021729 1 1 1 101 18 80940065 80940083 GAGCCCTAACTTCCACGAG 60 80940145 80946161 TTAATACCAACGAATCGGTTCC 59 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 3 2 2 80 11 70096538 70103142 AATGCGTACAGTAGCATCC 58 70096476 70096497 AGCAGTGAAGAAGAGATTAAGG 58 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 3 2 2 80 18 16526883 16526901 TCACTGAGGGTTTGTCCAG 59 16525398 16526841 CAAAGTCACCGAGTTCATGAG 59 NA Rattus norvegicus 81 AABR07002689.1 ENSRNOG00000050032 ENSRNOT00000075189 3 1 1 81 1 81377921 81377939 CAAAGAGATCCTCCAAGCG 58 81377777 81377877 GAGACTGGAGATGTAGGAGC 59 NA Rattus norvegicus 81 Vom2r5 ENSRNOG00000032365 ENSRNOT00000041332 2 1 1 81 1 806944 806963 CATCAGAAAGAAACAGCCGA 59 805740 806903 CCATATCTGCTGTATCATTGGC 59 NA Rattus norvegicus 81 Chchd3 ENSRNOG00000013211 ENSRNOT00000018001 1 1 1 80 4 60194810 60194831 AGAGAAAGATCGAATGATACGG 58 60132371 60194769 AATTCTGAGCTCCTCTCCT 57 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193,ENSRNOT00000033863 3 2 2 83 3 172801147 172802359 CAACTCTAAAGGATATTTCTCCAGC 60 172802399 172802418 ATAGTCCAAACCCATCAGCA 59 NA Rattus norvegicus 81 Rn60_X_0750.3 ENSRNOG00000051231 ENSRNOT00000075856 2 1 1 60 X 74163446 74163467 AGATGAATCATTTGCCACTTGG 60 74163484 74163506 GGGAAGTCTATTGTTATTCCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic3 ENSRNOG00000000861 ENSRNOT00000077026 2 1 2 80 X 140880648 140880671 CAAGCCCTATATCTGTAAAGTGTG 59 140880709 140888262 GCAGGACAACACTTCATGTG 60 NA Rattus norvegicus 81 Zfp296 ENSRNOG00000049605 ENSRNOT00000074579 1 1 1 83 1 80488180 80488389 TTCTATGTCTTCCGACCGC 60 80488436 80488454 AATGGGAAGATCTTCCCGC 60 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704,ENSRNOT00000078453 1 2 2 80 5 173337675 173337764 TTCCTCTATCGACAGGTGC 59 173337613 173337632 TTTCACTTGTGTAGGTGCCA 60 NA Rattus norvegicus 81 Pcdhb19 ENSRNOG00000039469 ENSRNOT00000060484 1 1 1 60 18 30575395 30575416 CTTGGCTCACTGATTATCACTG 59 30575436 30575455 GTTCACCATTAGTTCCCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000066439 3 2 3 108 11 11516875 11585030 ATTCGGACTGACGGATCTC 59 11516785 11516803 TACAGTTCAGAGTGGTGGG 59 NA Rattus norvegicus 81 Med25 ENSRNOG00000020363 ENSRNOT00000027675 1 1 1 80 1 100880845 100881125 AGAAGATAGGAGAGCGTGG 58 100880783 100880801 CCTTCTCAAACAGAAGCCT 57 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051323 ENSRNOT00000047933 2 1 1 60 8 40691925 40691943 TTACCAGGTCACCATGTCC 59 40691966 40691985 CATCACATACACTCCCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 3 2 2 80 X 153556533 153556918 CAGTATTATGCTACCGATGCT 58 153556473 153556494 TGGAATACTTCATAGCATGGTC 58 NA Rattus norvegicus 81 Slc35e2b ENSRNOG00000017075 ENSRNOT00000023097 1 1 1 83 5 173033074 173033979 CCTTATGAGGTTTGCAACGG 60 173034025 173034043 GAGCTCTTCACCGTCTCAG 60 NA Rattus norvegicus 81 Rrs1 ENSRNOG00000007240 ENSRNOT00000009482 1 1 1 60 5 9431416 9431436 AGTCATGAACAGCAAGAAACC 59 9431376 9431394 CCTCATCTGCTTGTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem88b ENSRNOG00000036869 ENSRNOT00000055343 3 1 1 106 5 173232729 173232747 GTTCCTGCTTCATCTGCTG 59 173231747 173232659 CTGGATGAACCCTCGAGTG 60 NA Rattus norvegicus 81 Rd3l ENSRNOG00000043031 ENSRNOT00000065971 1 1 1 80 6 136548957 136549274 CTGTTCTCAGCAGATTTCGA 58 136548896 136548917 GAACTTGCTTGAAGATGTAGAC 58 NA Rattus norvegicus 81 Zfp385c ENSRNOG00000025370 ENSRNOT00000032737 2 1 1 80 10 88543724 88544605 CCCTCAGAGCAAAGATCCA 59 88543662 88543680 TCTCTGGTTGATGGGTCTG 59 NA Rattus norvegicus 81 Olr1372 ENSRNOG00000049118 ENSRNOT00000074440 1 1 1 60 10 12570905 12570926 TACTACACAACAAAGATGACCC 58 12570866 12570884 TGACCCATGATCCAGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1414 ENSRNOG00000026714 ENSRNOT00000029524 3 1 1 60 10 43912296 43912316 GGACACTTCCTTGTATGAGAC 58 43912256 43912275 AGGGAGAAGAACAAACACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422,ENSRNOT00000071522 1 2 2 80 7 117678338 117678358 CAGTACTTTGTGGACTTTGTG 58 117678178 117678297 CATCAAATCCTCCAATTCGG 57 NA Rattus norvegicus 81 Fgf16 ENSRNOG00000061530 ENSRNOT00000090665 2 1 1 82 X 76794697 76796078 TTGGATCGAAGAAACTCACAC 59 76796122 76796140 CAAGGTGGATGCATAGGTG 58 NA Rattus norvegicus 81 Serinc2 ENSRNOG00000012989 ENSRNOT00000017577 2 1 1 80 5 148472044 148474759 GCACCTTCTTCATTAGCCTG 59 148471983 148472001 TTTCTGCTGGACACTCCTC 59 NA Rattus norvegicus 81 Fam101a ENSRNOG00000001011 ENSRNOT00000001337 1 1 1 81 12 37047377 37047395 CTCCCTTCTATGCCCTGTC 59 37040782 37040800 TTTGGGAAGAGGGAAGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704,ENSRNOT00000036232,ENSRNOT00000035576,ENSRNOT00000036180,ENSRNOT00000036168,ENSRNOT00000047964,ENSRNOT00000036283,ENSRNOT00000007429 1 8 8 80 1 226484714 226488196 CCTTTCTATTTGAAGGGTTTCC 57 226488236 226488255 TGAAACGGTCATAATCCAGG 58 NA Rattus norvegicus 81 LOC691196 ENSRNOG00000037027 ENSRNOT00000040763 2 1 1 107 5 166295435 166327430 CAGTCTGGATGTTTACCATGG 59 166294255 166294273 ATAACAGGATGACGGTGGT 58 NA Rattus norvegicus 81 Psmb9 ENSRNOG00000000459 ENSRNOT00000000532 1 1 2 86 20 3975056 3975074 CTCCTACAAGTACCGCGAG 60 3974621 3975006 ATGGTTCCATACACCTGGC 60 NA Rattus norvegicus 81 Zscan30 ENSRNOG00000030131 ENSRNOT00000039216 2 1 1 83 18 15871800 15873516 AGGTAAGATCCTCACCTCAG 58 15871395 15871413 GCTGGAAATTAGAGCTGGA 57 NA Rattus norvegicus 81 AC103169.1 ENSRNOG00000054122 ENSRNOT00000088247 3 1 1 60 7 9103929 9103949 CCTTAAACCATCAGTCAAGCA 59 9103889 9103910 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6b ENSRNOG00000007523 ENSRNOT00000009944 1 1 1 80 10 70087126 70087640 TTGAGTACACATTGGGCGA 59 70087064 70087086 CTTTGACCAACAAGGTAACAGAG 60 NA Rattus norvegicus 81 Nr2f1 ENSRNOG00000014795 ENSRNOT00000020044 1 1 1 83 2 5570959 5576031 TTCACGTCAGATGCTTGTG 59 5570894 5570912 GTATTCCTCCAGTGCACAC 58 NA Rattus norvegicus 81 Rfx6 ENSRNOG00000027949 ENSRNOT00000030642 1 1 1 80 20 32741536 32741554 ACAGGAACCCTTCTTCCAG 59 32741595 32744618 AGTGTCAACCTTATCCTTAGCA 59 NA Rattus norvegicus 81 AABR07008379.1 ENSRNOG00000053756 ENSRNOT00000047109 3 1 1 60 2 55108993 55109013 AAGTGTGGAGTTATAAGCCCT 59 55108953 55108971 TCTGCCACTTCTCTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 3 2 2 80 10 15702571 15702591 TTTCAGGATTGACTGTCACTG 58 15702633 15702737 TCAGTCACCTGGTTACTGG 59 NA Rattus norvegicus 81 Olr1236 ENSRNOG00000050733 ENSRNOT00000035054 3 1 1 60 4 1483249 1483270 CAGCATTCATGTATCTTAAGCC 58 1483288 1483309 GTGGATACTTTGTCTTCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565784 ENSRNOG00000029415 ENSRNOT00000047111 3 1 1 116 10 14543236 14543254 ATGAACAGTGTCCTGTGCT 59 14543413 14543431 TGCAGACTGAACTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1286 ENSRNOG00000055935 ENSRNOT00000086118 2 1 1 60 15 35762223 35762241 CTACTGTTGTTCCCATGCT 58 35762263 35762283 ACACTGACATCCTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata31a5 ENSRNOG00000018202 ENSRNOT00000024504 1 1 1 80 17 2421259 2423286 TTTCACCAGGAAGCCTCAG 60 2421197 2421218 GCATCGTTCCTACAATGATTCC 60 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000078494,ENSRNOT00000088168,ENSRNOT00000081017 2 4 6 80 1 41561484 41561502 CGATTCCGCATGATGAACC 60 41561543 41587192 TGTGTACACTCCAGAATTAAGC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000089984,ENSRNOT00000081017 3 2 6 110 1 41590563 41590584 TCCTTACAAACCTACTACATCC 57 41591588 41591606 CATGTATTTGCTCCCTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100912233 ENSRNOG00000048600 ENSRNOT00000043926 3 1 1 86 14 658743 659516 GAATCAAGTCCTAGGGTGC 58 658675 658694 AGGGAATCCAAGTCTTTCTG 57 NA Rattus norvegicus 81 Mir3559 ENSRNOG00000050872 ENSRNOT00000074039 1 1 1 69 X 75459303 75459326 GACAGACTTAGTACTACATGATCC 58 75459257 75459275 TACTCACTGCACGACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maf ENSRNOG00000012428 ENSRNOT00000016577 2 1 1 60 19 48195578 48195596 CTCAAGCAGGAGATCTCCA 59 48195536 48195557 TCTCGTATTTCTCCTTGTAGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.2 ENSRNOG00000057036 ENSRNOT00000089423 1 1 1 80 11 87296435 87296455 CATCTTTCACGGCTATGACTC 59 87296497 87296939 TGTACTCGCAGTAGCACTG 60 NA Rattus norvegicus 81 Secisbp2l ENSRNOG00000008629 ENSRNOT00000011551 1 1 1 80 3 118020614 118020632 GAAGAACTGACGGAGACGA 59 118019291 118020571 GCTCAGTCCAGTATCTTCCT 59 NA Rattus norvegicus 81 Gtf2h3 ENSRNOG00000001035 ENSRNOT00000001368 3 1 1 80 12 37433772 37434061 GGCAGTGAAAGATAATCAGGA 58 37433288 37433306 TTCATGTACTGCAGTGCAC 59 NA Rattus norvegicus 81 LOC102551168 ENSRNOG00000040054 ENSRNOT00000061595 1 1 1 60 11 29062513 29062534 GCTATGGTAGCTATGGTTATGG 58 29062553 29062573 CAGGACCAGTACCTTCTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551168 ENSRNOG00000040054 ENSRNOT00000061595 3 1 1 60 11 29062502 29062520 CTATGGCTGTGGCTATGGT 59 29062544 29062562 CCTTCTACAGCACAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903 3 1 2 86 6 26836277 26836424 CTAGTCAGGATGATCACGGA 58 26836473 26836491 GTGATAGAGGACCACAAGC 58 NA InUTR Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 1 2 2 88 7 12877159 12877177 CTGATCTGCAAGTCTGAGG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Fgf2 ENSRNOG00000017392 ENSRNOT00000023388 2 1 1 90 2 124081771 124123351 CCCACACGTCAAACTACAG 59 124123404 124123423 TTCCTTCATAGCCAGGTACC 59 NA Rattus norvegicus 81 LOC100911564 ENSRNOG00000048623 ENSRNOT00000072812 1 1 1 80 9 16315880 16315900 AAGATGCTGAAATACGCACTG 59 16315942 16316516 GGCTTCTTCAATGACCCAC 59 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000049090 ENSRNOT00000072189 3 1 1 117 2 200603652 200606168 CCACTGTCTGTTCAGAGGG 60 200606248 200606267 TCAGATTCTGACAGTCCTGG 59 NA Rattus norvegicus 81 LOC100910833 ENSRNOG00000006587 ENSRNOT00000009120 3 1 1 80 6 132029876 132029895 ACAACTGGCTATAACCTGGA 59 132028842 132029836 AATGTAAATCTGATCTCCAGCC 58 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000077380,ENSRNOT00000001373 3 2 2 80 12 37446433 37446550 GAGTACTCCGACTACTCCA 57 37446593 37446612 TCTTGACAGGGATATTCTGC 57 NA Rattus norvegicus 81 Zcchc11 ENSRNOG00000052062 ENSRNOT00000079161 2 1 1 80 5 128130545 128136243 TATAACACATTGCGCTGTGAC 59 128136280 128136303 GTACAGCACCATAAGGATATAAGC 59 NA Rattus norvegicus 81 Prr7 ENSRNOG00000021447 ENSRNOT00000036162 1 1 1 83 17 9694608 9694626 TCTACCGCAAGATCGTCAC 60 9694543 9694561 GAGGCTTGTAACTCGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogn ENSRNOG00000047786 ENSRNOT00000072490 3 1 1 106 17 15456946 15456964 CATTGATGCTGTACCACCA 58 15454291 15456877 TTAAGTTAGGCATGTCTGCA 57 NA Rattus norvegicus 81 Klf9 ENSRNOG00000014215 ENSRNOT00000019367 1 1 1 148 1 240909486 240931712 GAGTGCATACAGGTGAACG 59 240931821 240931842 CCTCATGAATCTCTTCTCACAC 59 NA Rattus norvegicus 81 Pyurfl1 ENSRNOG00000006858 ENSRNOT00000008973 1 1 1 94 4 88584519 88585699 GCCGCTTAGATATGATGCA 58 88585755 88585775 GTGGTATCATATTAGGGACCC 57 NA Rattus norvegicus 81 Tcf7l2 ENSRNOG00000049232 ENSRNOT00000019681 3 1 1 81 1 276660011 276704856 TTTCTGGAGTCGAACAAAGTG 59 276704897 276704917 CATTGCTGTACGTGATGAGAG 59 NA Rattus norvegicus 81 Gdap2 ENSRNOG00000019754 ENSRNOT00000026953 3 1 1 80 2 202510385 202510403 TTATGCCAAGCACGATCTG 58 202510446 202511336 GCCACAGTTATCTACACCTG 58 NA Rattus norvegicus 81 Mest ENSRNOG00000048088 ENSRNOT00000072698 1 1 1 80 4 58056977 58057361 CTATGATGGCTGGCATATCTG 59 58057401 58057421 AAGCCAAAGCCTAAGAAATCC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 2 2 2 80 7 130124240 130124452 GGAAATGACTACATCGACCAG 59 130124180 130124200 GGATATCTTTGCCAGAACCTC 59 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000047264 3 1 2 73 8 52753764 52753785 GATGTTTCTTATCTCACTGCCA 59 52762416 52762437 TCTGGTAACAGATATTGGTGGA 59 NA DesignNoJunction Rattus norvegicus 81 Chmp4c ENSRNOG00000010238 ENSRNOT00000013720 1 1 1 96 2 93578086 93578104 AGACATCACAGAGCAGCAG 60 93575745 93578027 CAGAAGCTCATCCTCATCGA 59 NA Rattus norvegicus 81 Cd163l1 ENSRNOG00000018978 ENSRNOT00000049269 2 1 1 80 1 212701028 212701173 CTGTTCAGGACTCCAAGAC 58 212701215 212701235 CCATTCAGGGAAATCTCTACG 58 NA Rattus norvegicus 81 Ear1 ENSRNOG00000025515 ENSRNOT00000021645 2 1 1 60 15 28260708 28260729 ACTTTCTGTAACCTCACAACTC 58 28260746 28260768 CTGTAGTTTGGTATCTGCATTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 3 2 2 80 10 13166184 13166202 GAATGTGGCTTCACCAGTC 59 13163195 13166140 AAAGGTGTCATCTGCTCGA 59 NA Rattus norvegicus 81 Olr1234 ENSRNOG00000057471 ENSRNOT00000082919 2 1 1 60 4 1460093 1460113 GTGGGTCTCACATCATAACTG 59 1460134 1460153 TTGACATAAGCAAGCAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ns5atp9 ENSRNOG00000016561 ENSRNOT00000022256 2 1 1 65 8 71518979 71518997 GAAGAAGCAGGAAGCAGTG 59 71526143 71526161 GTGATCAGGTTGCAAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Gar1 ENSRNOG00000061146 ENSRNOT00000078074 3 1 1 90 2 235257064 235257082 GAGGAGGATTTGGACGAGG 60 235255605 235257014 AACTCTCCTAATAAGACGACTCG 60 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084274 1 1 5 87 14 71542353 71542372 CTGGGATTATTGACCCTCTC 57 71542422 71567743 TAGACAAGCAAGCCTTGAG 58 NA Rattus norvegicus 81 Amd1 ENSRNOG00000000585 ENSRNOT00000000715 3 1 1 80 20 45386662 45386683 GATCAGGAAAGTTGTGGAAGTC 59 45385963 45386622 GTGCGACACTTAGAACTCTG 59 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 2 2 2 83 10 104616345 104616363 CTATCGAGCCTCTGAGCAG 60 104616105 104616299 TCACTGGAACCATTGGAGTC 60 NA Rattus norvegicus 81 Ccdc62 ENSRNOG00000038002 ENSRNOT00000057814 1 1 1 80 12 38086523 38089375 AGTTAGAAGGTGAGCTGCA 59 38086461 38086479 TCTGATTGGACTCAAGCGT 59 NA Rattus norvegicus 81 Ak5 ENSRNOG00000046947 ENSRNOT00000072048 1 1 1 80 2 257739284 257739304 AGGATCGGATTATGACAACCA 59 257713717 257717858 AAATCCTCCACGAAGCCTC 60 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139 1 1 2 81 4 166211730 166213358 GGAACCAGAACTTCAGAGC 58 166213403 166213421 ATTAGCAGGTGGTCTTGGT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940,ENSRNOT00000079571,ENSRNOT00000067954 3 3 3 94 4 27524803 27524822 AGTCTGGAGTCTCAGATGGT 60 27524879 27537811 CCTTCATATGGCTCTCGCT 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076225,ENSRNOT00000076545 1 3 3 80 1 48049609 48049632 CTTGGTAGGACATAACATGATGAC 59 48049670 48051103 TGATCGTAGCTTTCTGGGAG 59 NA Rattus norvegicus 81 Lrrc40 ENSRNOG00000011555 ENSRNOT00000015434 1 1 1 80 2 264880751 264882885 CAATGATATTAGTAGTCTGCCCTG 59 264882918 264882942 GTTCTTAGAGGATTTCCTTCTAGTG 59 NA Rattus norvegicus 81 Cldn5 ENSRNOG00000045811 ENSRNOT00000071806 3 1 1 60 11 86356971 86356989 TCCAGTCAAGTACTCAGCA 58 86356929 86356949 GTTCTTCTTGTCGTAATCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363287 ENSRNOG00000029293 ENSRNOT00000049858 2 1 1 60 11 28724736 28724754 TGGAGTCTATGGCTTCCCT 60 28724772 28724796 CAAGTAGGTTGGATAGCAATATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkal1 ENSRNOG00000018381 ENSRNOT00000024854 2 1 1 80 17 37125129 37125149 AAACCAGAGTCTATACACCCT 58 37125190 37294791 AATAATCCAGAGCCGTTGTC 58 NA Rattus norvegicus 81 Vstm4 ENSRNOG00000020078 ENSRNOT00000027198 3 1 1 81 16 9099795 9099815 TGCAAGAAATCAGCAAACTCC 60 9099855 9116889 AGGGAGATCACTCTCATTTCTG 59 NA Rattus norvegicus 81 Sct ENSRNOG00000017873 ENSRNOT00000024094 3 1 1 92 1 214265052 214265174 TACAGGATTGGCTTCTGCC 60 214264978 214264996 ACTCTGAATGGTCGACAGC 60 NA Rattus norvegicus 81 AABR07011700.1 ENSRNOG00000057979 ENSRNOT00000071111 3 1 1 60 2 166475567 166475585 ACATGGAAACAACCCTGGA 59 166475606 166475627 CTTGTATCTACAGCTCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnase2b ENSRNOG00000016262 ENSRNOT00000021861 3 1 1 80 2 252438974 252438992 CACTGTACTTCAGTCAGCC 58 252436944 252438930 GCTGCAAAGATGTCATCAG 57 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 2 2 2 80 5 4469563 4469581 TGGACTGCGAATGGAAGAG 60 4469623 4495039 ACTTGGTCACACTCTTCTAGG 59 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000013073 1 2 3 80 4 61774328 61775589 TCTTCATTGTCAGCAAGTTGTG 60 61775630 61775648 GATCCGTGAGGGTCTTCTG 60 NA Rattus norvegicus 81 LOC100910416 ENSRNOG00000049183 ENSRNOT00000074056 1 1 1 60 2 46204362 46204380 CCAGCACTTACAACAACGA 58 46204403 46204422 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287,ENSRNOT00000040740 3 2 2 83 1 261421574 261423462 CACTCTGAATGAGGGTGCA 60 261423509 261423527 CACACCTCCTGAAGGTAGC 60 NA Rattus norvegicus 81 Shisa6 ENSRNOG00000029012 ENSRNOT00000057509 3 1 1 83 10 53015252 53037186 ATGAACATCCACAGGGCTC 60 53015187 53015208 CGAGATGGTTTCTCTTTCACAG 59 NA Rattus norvegicus 81 Rn60_10_0702.2 ENSRNOG00000021357 ENSRNOT00000055955 2 1 1 60 10 70472580 70472598 ACCCGAGATGGAATAGGAC 58 70472620 70472640 GAGGAAGTTTCAGGATACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024637.1 ENSRNOG00000029131 ENSRNOT00000048001 2 1 1 80 16 9772975 9772994 CTGTCTGAGGAGGAAATCTG 57 9773034 9774700 GTCTGAGGAATCATTACGTAGG 58 NA Rattus norvegicus 81 Hyal3 ENSRNOG00000016093 ENSRNOT00000021590 1 1 1 80 8 116341755 116341877 CTAGCTCTGAGGAAGAGTGC 60 116341920 116341938 CCTTGGTCACGTTGATCAC 59 NA Rattus norvegicus 81 Trappc10 ENSRNOG00000023210 ENSRNOT00000032240 1 1 1 80 20 11201149 11204311 GCTCTTAGAAGTCTCTGTCC 57 11204354 11204372 TCTATCCTCTGCAAGACCT 57 NA Rattus norvegicus 81 Gpr50 ENSRNOG00000011335 ENSRNOT00000015147 2 1 1 80 17 36771803 36771821 TCGTCGTAGACCTGATTGG 59 36771864 36774458 AGATGTTGCCAGAATTTCGG 59 NA Rattus norvegicus 81 Cntf ENSRNOG00000012460 ENSRNOT00000016690 3 1 1 76 1 229600849 229600868 GACCTGACTGCTCTTATGGA 59 229599862 229599880 CCATCCACTGAGTCAAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 3 2 2 60 10 103409096 103409115 TTTCTATGGATGAACCAGCC 58 103411691 103411710 CCATTGTAGCCACTGTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Pafah1b1 ENSRNOG00000002755 ENSRNOT00000003696 2 1 1 80 10 61461467 61461486 TGGGATTACAAGAACAAGCG 59 61459910 61461427 CGTCTTATGGAAATCCAAGGAG 59 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153,ENSRNOT00000004881 2 2 2 124 13 60591803 60593959 TGATTTAGGTGCATGCAATCAG 60 60595516 60595536 TTCTGTCAGATACAATGGCCA 60 NA Rattus norvegicus 81 Sap18 ENSRNOG00000020771 ENSRNOT00000028179 1 1 1 60 10 89635919 89635940 ATGCAACCTTGAAAGAACTGAC 60 89635961 89635979 TTCTTTCTGGCTTCTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7c-2 ENSRNOG00000035461 ENSRNOT00000053584 1 1 1 60 7 126590225 126590245 TGAGGTAGTAGGTTGTATGGT 58 126590262 126590285 GTAGATTGTATAGTTACCGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 3 2 2 82 9 16818503 16818521 GATCTCGCTCAGTACTGAC 57 16817704 16818457 TATCAGAGTTGAGCACGTG 57 NA Rattus norvegicus 81 AABR07025051.1 ENSRNOG00000042099 ENSRNOT00000065453 2 1 1 92 16 26593403 26593424 GCAGAGGCCTACTGTATCTG 60 26593475 26593497 GAACACAATGATGTAGGAAGGAC 60 NA Rattus norvegicus 81 RGD1563835 ENSRNOG00000033603 ENSRNOT00000042756 3 1 1 60 11 64472364 64472382 ATGTGTTCAGAGACCCAGC 60 64472406 64472424 TCAAACTTGACCTTGGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559995 ENSRNOG00000032335 ENSRNOT00000040010 1 1 1 60 7 69982562 69982583 CTTGTGACCCGTAAAGATATCC 59 69982523 69982543 CTGGATCTTTCAGGTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 3 2 2 80 1 126189406 126189427 TTTCACAAGATAGTTTGGCAGC 60 126188964 126189371 CTGTCACAGTACCATTTATCTTCAG 60 NA Rattus norvegicus 81 AABR07065877.1 ENSRNOG00000053487 ENSRNOT00000071876 2 1 1 60 6 143536782 143536800 CACAGCCTTCATGCAACTC 60 143536740 143536758 TGCACAGTAATAGACCGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brd1 ENSRNOG00000004538 ENSRNOT00000006034 3 1 1 82 7 129702621 129703075 TGAGTCTCAAGGAGGTACCA 60 129702558 129702576 AGCTTCTAGCCGTTTCCTC 60 NA Rattus norvegicus 81 Ptgfrn ENSRNOG00000015655 ENSRNOT00000021162 3 1 1 80 2 203464467 203464488 CTACAAGTGTTCAACTCCAAGC 60 203461737 203464426 TCTGCCAGCACTTTAACCT 59 NA Rattus norvegicus 81 Tbx15 ENSRNOG00000019565 ENSRNOT00000067358 2 1 1 80 2 201352733 201353746 AAGGACACATCATTCTGCAC 59 201353788 201353807 AAAGATCACTGCTGAAGTCC 58 NA Rattus norvegicus 81 Ppp1r3a ENSRNOG00000059350 ENSRNOT00000085596 3 1 1 80 4 41177965 41179907 GACTTGATGATAAACCAACGG 57 41177905 41177923 ATTTGTGGAGTTGACTGCA 58 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000067034 1 1 2 80 2 124403445 124403464 TCCCTAGACCAGATCAAAGC 59 124403506 124404689 AAACTGTGTTGGTCTTCTCG 59 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000058495,ENSRNOT00000067034 1 2 2 95 2 124401524 124403291 GGATTTCAGATGCATGGCAG 60 124403349 124403367 CTAGTGAAGTGTGGCTGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1306782 ENSRNOG00000005572 ENSRNOT00000007357 2 1 1 60 7 123222359 123222377 AAGAACCCAAACTTCCACG 58 123222400 123222419 CCTGCATATTCCAGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306782 ENSRNOG00000005572 ENSRNOT00000007357 3 1 1 60 7 123222358 123222377 GAAGAACCCAAACTTCCACG 60 123222399 123222418 CTGCATATTCCAGACATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 2 2 2 81 9 17123211 17123675 GAATATCGGAACCCAGGAGAG 60 17123718 17123736 GGTTCCTGGTACACCTGAC 60 NA Rattus norvegicus 81 Lrrc31 ENSRNOG00000027971 ENSRNOT00000033267 1 1 1 80 2 116338200 116338220 TTATCAAGGTCCCTTCGAGAG 59 116338261 116341232 CATGACTAAGGCCAGGAGAG 60 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 3 2 2 97 10 70328334 70332640 TATTTCAAGTGTCAGCAGACTG 59 70328258 70328282 CTGGCTTATTAAGTTCTCTAGTCTC 59 NA Rattus norvegicus 81 AABR07006458.1 ENSRNOG00000046420 ENSRNOT00000071578 3 1 1 80 1 235394866 235394887 AATTCAGGGAGTACACAGAGTC 60 235394020 235394828 GTGTTAAGAGAACTGGAATGCT 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000052101 3 1 2 60 4 122131672 122131690 ACTCTTTGAGGTCCATGTG 57 122131717 122131737 ATGGAGCTTGTCTATCAAGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886,ENSRNOT00000064105 1 2 2 80 19 12575924 12575946 GTGACTGGTATCTTGGAAATCTC 59 12555799 12575887 GTATGACTCCTGTGTTATAGCC 58 NA Rattus norvegicus 81 Terf1 ENSRNOG00000007291 ENSRNOT00000049741 2 1 1 80 5 2874349 2880645 AGGAAAGTCTCTTGATGCAC 58 2874288 2874308 ATTGAGTCCCAAATCATCAGG 58 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898,ENSRNOT00000017573 2 3 3 80 18 25197959 25198386 CAAGATAGCAGAGAACAATGAC 57 25198427 25198445 GTATCCATGGTCAGCAGAG 57 NA Rattus norvegicus 81 Acvr2a ENSRNOG00000005334 ENSRNOT00000007404 2 1 1 80 3 33021526 33021545 GAAGATTTGGTTGTGTCTGG 57 33021588 33023278 ACTGTTTGTCCTGTATCGG 57 NA Rattus norvegicus 81 Mir145 ENSRNOG00000035474 ENSRNOT00000053597 2 1 1 62 18 56969954 56969972 TTTCCCAGGAATCCCTTGG 59 56969910 56969933 CATGACCTCAAGAACAGTATTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689664 ENSRNOG00000049674 ENSRNOT00000047230 2 1 1 80 19 28265705 28266343 TTCTCTAGCAACCTGCTCAG 60 28266385 28266404 CTTGCTTTCCTGCTTCAGTG 60 NA Rattus norvegicus 81 Fbn1 ENSRNOG00000007302 ENSRNOT00000056022 1 1 1 80 3 117650344 117651862 AACTGTGAAGACATGGATGAG 58 117650284 117650303 CTTGAAACTCCCATCTTCGT 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 1 3 3 80 19 10432512 10434236 CATCTTCTCCTTCCATAATGCC 59 10432453 10432471 TGCAGTTCCTTCTTGAGGT 59 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000049783 ENSRNOT00000073989 1 1 1 60 6 135550402 135550420 GGTTATGAGCACTGAGTGG 58 135550444 135550462 CTTAACCATACCGAGCGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr446 ENSRNOG00000046122 ENSRNOT00000071646 2 1 1 60 3 73003942 73003960 TGTGGTGATCCCTATGCTG 59 73003982 73004002 ACCTTTCACTTCCTTGTTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Diablo ENSRNOG00000029197 ENSRNOT00000047861 2 1 1 80 12 38491127 38494499 GTTCCTATTGCTCAGAAATCAGAG 60 38494537 38494556 GTCCGTTACCAAAGACACAG 59 NA Rattus norvegicus 81 Slc25a29 ENSRNOG00000004351 ENSRNOT00000005753 1 1 1 80 6 132738579 132738878 ATCAAGCAAGAAAGTGTGCTG 60 132738519 132738538 CACCAGTGCATTGATGAAGG 60 NA Rattus norvegicus 81 RGD1565367 ENSRNOG00000026919 ENSRNOT00000038950 3 1 1 80 4 62482687 62482705 TTCTCAATCTTCTGTGGGC 58 62482533 62482643 CAGCTGGAGAATTCCTGTC 58 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660,ENSRNOT00000091113 1 2 2 84 9 17108153 17108171 GGACTGGGAGATTGTGGAG 60 17108218 17108316 GTACCGCTCATTGAGTTCCT 60 NA Rattus norvegicus 81 ST7 ENSRNOG00000056243 ENSRNOT00000080880 3 1 1 80 4 45157458 45159673 TCAACACAGACGAGACACC 60 45159717 45159735 CTGGTCCTTCCAAGTCTCC 59 NA Rattus norvegicus 81 Rasd2 ENSRNOG00000014761 ENSRNOT00000020017 1 1 1 84 19 14658780 14658798 GTACCAGCTGGACATCCTG 60 14658846 14661586 GAAGACGTCTCCTGTGAGG 60 NA Rattus norvegicus 81 Hmgb1-ps3 ENSRNOG00000032420 ENSRNOT00000046626 1 1 1 60 7 132983993 132984014 GATGCTTCTGTCAACTTCTCAG 59 132983954 132983972 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccser1 ENSRNOG00000029321 ENSRNOT00000043827 3 1 1 80 4 91884116 91971245 CTGAACTTCTAGGATGTGATTCTG 59 91971281 91971302 TGCTTGTATTTCTTCTAGCCCA 60 NA Rattus norvegicus 81 Tbca ENSRNOG00000016100 ENSRNOT00000021543 3 1 1 60 7 144503774 144503792 GACTTGGAAGAAGCTGAGG 58 144503814 144503834 CTAACTTCACAGAATCCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0700.5 ENSRNOG00000053872 ENSRNOT00000085054 1 1 1 60 10 70350951 70350970 GTGAGCTGGGAAATGAACTG 59 70350910 70350929 GTTTAGCTGTTAAGAGCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0700.5 ENSRNOG00000053872 ENSRNOT00000085054 3 1 1 60 10 70350950 70350968 GAGCTGGGAAATGAACTGG 59 70350908 70350928 TAGTTTAGCTGTTAAGAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021066.1 ENSRNOG00000039332 ENSRNOT00000060277 2 1 1 80 13 55701238 55701256 AGAGGAGGAAGAAGATGGG 58 55701140 55701195 CCATCCTCAGCTTTATCTCC 58 NA Rattus norvegicus 81 RGD1561102 ENSRNOG00000043412 ENSRNOT00000067777 2 1 1 60 7 29281381 29281399 ACTAGGAGAATGGGTAGGC 58 29281339 29281359 TATCACTTTACGAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Loxl3 ENSRNOG00000061373 ENSRNOT00000081196 3 1 1 80 4 113882834 113882969 GGAAACTACATTCTTCAGGTGG 59 113883008 113883028 GCACTTCATAGCATTGTTGGT 60 NA Rattus norvegicus 81 Nphp3 ENSRNOG00000048978 ENSRNOT00000014636 1 1 1 80 8 112550962 112550983 GACGCCATATCTATGATAACGG 59 112551022 112551967 CTGTTCTAGCATCTTCTCCTG 58 NA Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000074947 3 1 2 74 6 142676390 142676408 TTCCTCCTGTCAGTAGCTG 58 142635584 142635602 AGGCTTCACTAGTTCAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 3 2 2 80 4 2056438 2060043 TAACTTTAGCCCAGAAACTGG 58 2060085 2060103 TCTGCTTCACTTTCTCCCA 59 NA Rattus norvegicus 81 AABR07060165.1 ENSRNOG00000048544 ENSRNOT00000065546 2 1 1 86 4 60547684 60547791 CTACATCCCACAAAGCAAAGG 60 60547618 60547637 GCAGTGTTGTTCCACATCTC 60 NA Rattus norvegicus 81 Rnf225 ENSRNOG00000038445 ENSRNOT00000058574 1 1 1 81 1 65659508 65659912 GAGGTCTACAGGTCCATTCTG 60 65659447 65659465 AGGACTAGAACCCTGGGAG 60 NA InUTR Rattus norvegicus 81 Zfp653 ENSRNOG00000014065 ENSRNOT00000018874 1 1 1 80 8 23079055 23079073 ACATCGCTACTTCCAGGAC 59 23069644 23079011 CCATTGCCCACTTTGTCAC 60 NA Rattus norvegicus 81 AABR07065814.2 ENSRNOG00000042319 ENSRNOT00000066416 2 1 1 80 6 142353053 142353073 GCATGGTCTACCTACAAATGG 59 142352862 142353011 TCCAGATACAATGTGCTGC 58 NA Rattus norvegicus 81 Bmp6 ENSRNOG00000013717 ENSRNOT00000018359 2 1 1 80 17 26955424 26955443 GAGAGTGTTCCTTCCCTCTC 59 26955276 26955383 GATTCATAAGGTGGACCAAGG 59 NA Rattus norvegicus 81 Cyp4b1 ENSRNOG00000055078 ENSRNOT00000013321 2 1 1 80 5 134514946 134514964 CATTTACTGGCTCACTCCA 57 134514752 134514904 CTGATGACCTCATCTGTATGG 58 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 1 2 2 80 X 15157991 15158012 CAACTGATAAGAAACGCTCAGG 60 15158053 15158910 GGCTGACGTGTTTGAATCC 60 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 2 2 2 80 X 15156406 15156425 GGAGCTATACTCACAGCTGG 60 15156465 15156574 AGTCCTACTTGACAGTCATCTC 59 NA Rattus norvegicus 81 Drgx ENSRNOG00000020045 ENSRNOT00000027186 3 1 1 80 16 8829548 8829566 ACCCAGATGTCTTCACCAG 59 8829610 8832368 GGTTCTGGAACCAAACCTG 59 NA Rattus norvegicus 81 Tmem140 ENSRNOG00000026965 ENSRNOT00000029845 1 1 1 60 4 62391070 62391093 CCTTACTCATCATCTTGCTTATGG 60 62391110 62391130 TTGTCCTTCTTATCTCGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr3 ENSRNOG00000001701 ENSRNOT00000002310 3 1 1 80 11 33911479 33911498 CTGAAGACGAACTTCTTTGC 58 33911540 33917021 ATTCACCACTCTACCATGTG 57 NA Rattus norvegicus 81 Fahd2a ENSRNOG00000013974 ENSRNOT00000018922 2 1 1 80 3 120007225 120007243 TCTTCAGCAAGTTCTCCAG 57 120005487 120007182 CCCAGTCAACTTCCTTACTC 58 NA Rattus norvegicus 81 Tmem128 ENSRNOG00000005346 ENSRNOT00000007115 1 1 1 82 14 77277932 77277950 TTTGGCGTCCATCATTGTG 59 77275518 77277889 AGAGAAACCAACTATTGGTGTG 59 NA Rattus norvegicus 81 Pcdhb22 ENSRNOG00000020028 ENSRNOT00000027133 3 1 1 60 18 30593220 30593238 ACTAGCCCTGTTGACACTG 59 30593259 30593280 TATTTCCCACATCCAAATCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aars2 ENSRNOG00000025808 ENSRNOT00000031549 2 1 1 80 9 17871567 17871777 ACGTCTCATTGAGTTCACAG 58 17871506 17871524 TGTAGCATCTTCAGTGTGG 57 NA Rattus norvegicus 81 Thap7 ENSRNOG00000037967 ENSRNOT00000057751 3 1 1 102 11 87400554 87401710 GGAATCAGTGGGTATCACAG 58 87400471 87400489 GATAACCATGCACCTTGGT 58 NA Rattus norvegicus 81 RGD1563861 ENSRNOG00000056765 ENSRNOT00000083951 2 1 1 80 X 156439210 156439396 TCTTCTGAAGCACTGGAGG 59 156439148 156439168 GATATGAAAGCCATCCTTGCC 60 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 1 1 1 60 1 91072757 91072776 GGACAACATCCTGTACAGAC 58 91072321 91072734 TAAACAGTAGGCAGTGCCC 60 NA DesignNoJunction Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 1 2 2 80 17 16367075 16367093 TAAGTACGAGAACCCAGCC 59 16367136 16369072 ATATTGTCAGTGACCCAGGA 58 NA Rattus norvegicus 81 Tshz1 ENSRNOG00000016246 ENSRNOT00000021750 2 1 1 60 18 80864160 80864179 GCATCAAGAAACAACCAGAC 58 80864119 80864137 GGCTCCTTCTTCTCTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000018487,ENSRNOT00000086385 3 2 2 80 1 218521431 218521450 GAAGGAAAGGGAAGAAGCAG 59 218519453 218521388 GTAGATGCACCTGTGTTGG 59 NA Rattus norvegicus 81 Pla2g7 ENSRNOG00000025691 ENSRNOT00000038222 2 1 1 80 9 19945823 19945842 ACATTGAACATGGAAACCCA 58 19944252 19945783 TCTCATCGATAGAATCCTTCAG 57 NA Rattus norvegicus 81 Vom2r75 ENSRNOG00000022955 ENSRNOT00000036914 3 1 1 80 18 35117 35136 TACAGGACCACATTGGAGAG 59 33277 35076 GAAAGCTGAAGGAAATGTGGA 59 NA Rattus norvegicus 81 Casq2 ENSRNOG00000016243 ENSRNOT00000021846 3 1 1 80 2 204566387 204567360 GAATGTAACCGATGCTGACAG 60 204567402 204567420 CAGTCTTCCAGCTCCTCAG 60 NA Rattus norvegicus 81 AABR07013302.1 ENSRNOG00000055038 ENSRNOT00000041479 3 1 1 60 2 232372976 232372995 CACTTTGTGAGGACTAACGG 59 232372935 232372955 TGAATTCATATGGACTGGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122,ENSRNOT00000082030 2 2 2 80 10 70700141 70700267 AGACACAACAAAGCTATTCTGG 59 70700307 70700326 CATAACCGGAGTAACCACCA 60 NA Rattus norvegicus 81 LOC297756 ENSRNOG00000007238 ENSRNOT00000009490 1 1 1 81 5 2799687 2803301 GCAGATGGCTACTGTTGTG 59 2799624 2799642 ACATGAGGTTGACCTCCAC 59 NA Rattus norvegicus 81 Ms4a2 ENSRNOG00000020993 ENSRNOT00000028491 3 1 1 80 1 227959214 227960056 GAATTTGAGCGTAGTAAGGTCC 59 227959155 227959175 TTCCAACGCACTGTAAATTGG 60 NA Rattus norvegicus 81 Fth1 ENSRNOG00000022619 ENSRNOT00000030919 3 1 1 83 1 226032377 226032396 GGGAACATGCTGAGAAACTG 59 226032438 226032708 CACGGTCAGGTTTCTTTATATCC 59 NA Rattus norvegicus 81 Pik3r6 ENSRNOG00000003992 ENSRNOT00000005405 1 1 1 80 10 55133759 55134283 AGGGATGTGGTCAGATTTGAG 60 55134324 55134343 ATTGAACGCTGACATCTTGG 59 NA Rattus norvegicus 81 AABR07046635.1 ENSRNOG00000047780 ENSRNOT00000033772 1 1 1 104 5 230929 230947 TTCACTCAGGAAGAGTGGG 59 231010 231231 CCAATTGTAACCTATAGCAGTGAG 59 NA Rattus norvegicus 81 Vangl1 ENSRNOG00000016477 ENSRNOT00000022182 3 1 1 80 2 204581856 204581874 ACTACCACAGCATGGAGAG 59 204579309 204581812 GTTCAAGGAAAGCCTTGGG 59 NA Rattus norvegicus 81 Mansc1 ENSRNOG00000028526 ENSRNOT00000029510 3 1 1 82 4 168369967 168369985 TTTCTGTCCCAGTGAGGAC 59 168364222 168369924 TCAGTGGAACATCTCTGAAGAG 60 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765,ENSRNOT00000066041 1 2 2 80 5 122683698 122683719 GCGTTATGATTTCTTTGCTCAG 59 122683758 122687650 TCCATGTAATCCGTTACACCA 59 NA Rattus norvegicus 81 Lrrc8d ENSRNOG00000002121 ENSRNOT00000002888 2 1 1 96 14 5089016 5101012 GGATCATGGGAATGTTTACCC 59 5088940 5088958 TCCATAAACACGTCCCACC 60 NA InUTR Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 3 2 2 84 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092592 141092610 GCTGAGCATCTGATTCTGC 59 NA Rattus norvegicus 81 Tenm3 ENSRNOG00000012802 ENSRNOT00000017624 3 1 1 80 16 46805137 46805616 TTGTTATAGAGTCTGTGGTGG 57 46805656 46805676 GGAAACAATGACAAGTTCCAG 58 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734,ENSRNOT00000086756 3 2 2 80 1 16863988 16864006 AGATAGACGTGAAAGCGGG 60 16864048 16864475 CATCAACATGACCAATGACCA 59 NA Rattus norvegicus 81 Lsmem1 ENSRNOG00000039110 ENSRNOT00000059823 2 1 1 80 6 60121228 60121248 ATGTCGTGGATTCCATAAACG 59 60119591 60121192 TCTCCTCTAAAGAGAATAGATGCTG 60 NA Rattus norvegicus 81 Evc2 ENSRNOG00000007025 ENSRNOT00000009914 2 1 1 80 14 78132958 78132976 GTTCAGAGCAGATCTGGTG 58 78130350 78132917 CTCTTCTTCAATATGCTCTCCT 58 NA Rattus norvegicus 81 Idnk ENSRNOG00000019519 ENSRNOT00000026407 3 1 1 81 17 6889791 6892413 CTCTGGGAAATCCACTGTG 58 6889528 6889547 CTCAGAGTGGTAATCATCGG 58 NA Rattus norvegicus 81 Myf5 ENSRNOG00000004768 ENSRNOT00000006453 3 1 1 84 7 49732089 49732107 GAACTATTACAGCCTGCCC 58 49731305 49732041 GTTACATTCAGGCATGCCA 59 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000049124 ENSRNOT00000074775 1 1 1 80 17 32094836 32096138 GCCAGAAGATACAAGCCCA 60 32096179 32096200 ATAGTTCACAACTTCAGGAGCA 60 NA Rattus norvegicus 81 Crmp1 ENSRNOG00000004781 ENSRNOT00000065334 2 1 1 80 14 78283875 78285718 GAACCACGATGATCATTGACC 60 78283815 78283833 CTGCTTCGTGCCATTTCTC 60 NA Rattus norvegicus 81 Stoml2 ENSRNOG00000009535 ENSRNOT00000013151 1 1 1 80 5 58474890 58474999 CCTTACAAGGCAAGTTATGGTG 60 58474831 58474852 AAGCTCTGATCTCATAGTCGTC 60 NA Rattus norvegicus 81 Lyrm4 ENSRNOG00000047970 ENSRNOT00000072056 1 1 1 84 17 29457651 29552350 ATAATCCGCAGACAGGTCC 59 29552396 29552416 CCTATGTCCTTGGATTCTCCT 59 NA Rattus norvegicus 81 Serpinb9d ENSRNOG00000022139 ENSRNOT00000032707 2 1 1 81 17 32516780 32517904 AGTCCAGATATCTCAGGCAC 59 32517947 32517966 GTTGTGAAGAAGCAACTGGA 59 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 2 3 3 90 3 22918930 22938763 ATGTCACCATGGGTTCTGG 60 22892717 22892735 AGCTTCTTGGCTTCTTCCT 59 NA Rattus norvegicus 81 AABR07009357.1 ENSRNOG00000050719 ENSRNOT00000071039 2 1 1 83 2 94315856 94315893 CATCAAAGGACACAGACCA 57 94315791 94315809 GCACTCACTTCCTGATTCC 58 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 2 2 2 80 8 25889915 25889933 TCGGAAGAATTCAGGACGT 59 25880855 25889874 CTTGGTTATCAGTTGGTTCTGG 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 3 2 2 82 8 25889916 25889935 AGTCGGAAGAATTCAGGACG 60 25880855 25889874 CTTGGTTATCAGTTGGTTCTGG 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271,ENSRNOT00000005861 1 2 2 80 6 86729289 86730849 TGTGGTGCTGGTAATACTG 57 86730891 86730911 ACAACCTATCTGTGACAATCC 58 NA Rattus norvegicus 81 Fam83b ENSRNOG00000011925 ENSRNOT00000015947 1 1 1 80 8 83618677 83625905 GGTTCTTACAGTTACATGTGGTC 60 83618619 83618640 TAACTCTACAAGGTGTCCTGTG 60 NA Rattus norvegicus 81 Nutm2f ENSRNOG00000027311 ENSRNOT00000044543 3 1 1 80 17 15024181 15024199 CAGAAATGGACATCCTGGC 59 15023700 15024138 AGTGCTTCTCTATCAGCTGG 59 NA Rattus norvegicus 81 Osbpl10 ENSRNOG00000011435 ENSRNOT00000015643 2 1 1 80 8 123270680 123278195 ACTTAACCAAGGTGGTGCT 59 123278239 123278257 GGTGTGCCATAAAGTCTGC 59 NA Rattus norvegicus 81 Osbpl10 ENSRNOG00000011435 ENSRNOT00000015643 3 1 1 80 8 123126829 123131191 TACAAGCTGAGAGCTGCTG 60 123131235 123131253 CTCCATGTGGTACTTGGCA 60 NA Rattus norvegicus 81 Nbas ENSRNOG00000024503 ENSRNOT00000009779 2 1 1 80 6 38538049 38538067 ATCACGAAGAACTACCGCC 60 38538106 38539192 CTCTTCACTTTCAATCTTCCTCTG 60 NA Rattus norvegicus 81 LOC680039 ENSRNOG00000027623 ENSRNOT00000029191 3 1 1 81 14 79296030 79306876 TCTGCTTCTGATGAAAGCTC 58 79306920 79306938 CTTGCTCACTCTGTAGGTC 57 NA Rattus norvegicus 81 Krt27 ENSRNOG00000011628 ENSRNOT00000015740 2 1 1 85 10 87259429 87259542 TGGTTCCAAGAGAAGAGCG 60 87259362 87259380 TCAGTGAGTTCGTTCCTGG 59 NA Rattus norvegicus 81 Krt27 ENSRNOG00000011628 ENSRNOT00000015740 3 1 1 87 10 87257739 87259317 TCTTAGCCATGAAACACTCTC 58 87257672 87257690 ATCTGAGCCTGGATCTGAG 58 NA Rattus norvegicus 81 Olr881 ENSRNOG00000043125 ENSRNOT00000065917 1 1 1 60 7 3804481 3804499 TGATGTGTCTCCCTTCCTG 59 3804439 3804457 AACCATCTGCTCAATGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam10 ENSRNOG00000046222 ENSRNOT00000057384 1 1 1 97 1 83004000 83004788 GACTACTGCTCACAGCCTC 60 83004848 83004867 GTTCTCCTCAACAACGTTGG 60 NA Rattus norvegicus 81 Mybl1 ENSRNOG00000021669 ENSRNOT00000067977 2 1 1 80 5 9295674 9295693 CTTCAACACAAACCTTGTGC 59 9295734 9298136 ATAACCAGGGATCTGAACAGG 59 NA Rattus norvegicus 81 AABR07065889.1 ENSRNOG00000047011 ENSRNOT00000046694 2 1 1 60 6 143768769 143768789 ATGAGAAGTTTAAAGGCAGGG 58 143768729 143768747 ATGTAGGCTGTGTTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim63 ENSRNOG00000016543 ENSRNOT00000067524 1 1 1 80 5 152538454 152539363 AGGACAGAAGACTGAACTGAG 59 152539404 152539423 AGCTGCGAGATGATAGTCTG 60 NA Rattus norvegicus 81 LOC100910839 ENSRNOG00000021507 ENSRNOT00000033811 2 1 1 80 1 113463276 113463294 AACAGCTCACTGAACTGGA 59 113463336 113468483 TCTGTGATTCCCTGTCAAGAG 60 NA Rattus norvegicus 81 LOC100911167 ENSRNOG00000025534 ENSRNOT00000029272 2 1 1 88 X 15380015 15380033 TACCTGTGCAATGCTTGTG 59 15380085 15381135 TTGCTGACAATCATTCGCT 58 NA Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 3 2 2 85 17 31442647 31442667 GAAGTTACCATGGAGACAGTG 59 31442710 31442966 CCGAGGCACATATTTATTACCAG 60 NA Rattus norvegicus 81 Olr1533 ENSRNOG00000050062 ENSRNOT00000072466 1 1 1 60 11 45666853 45666874 CAAACCTTTACTCTACCCAGTC 59 45666814 45666835 CATTGTTAGAAGACGTACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgprh ENSRNOG00000014965 ENSRNOT00000020070 1 1 1 60 1 48069347 48069370 GAACATGCTCTCCACTATAAACTG 60 48069310 48069330 ACTGCCTACCACAAAGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sun2 ENSRNOG00000015177 ENSRNOT00000046399 3 1 1 81 7 120961357 120962352 CTTCGTCCTAACCAGGTCC 60 120961294 120961312 AGTCAGGAGTAGCAAGAGC 59 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 3 2 2 80 9 10998334 10998355 ATATCCATTTGCATCCAGAGGA 60 10998396 10999109 GGCAGTTGATTCGTTCCTG 59 NA Rattus norvegicus 81 Eps8l2 ENSRNOG00000018336 ENSRNOT00000024725 2 1 1 80 1 214352148 214352167 CTTACCTTCGAGTCAGGTCC 60 214352210 214352314 CAGGTTCTCCACGATCCTG 60 NA Rattus norvegicus 81 Tor3a ENSRNOG00000004307 ENSRNOT00000005726 2 1 1 80 13 74270911 74276170 ACTTCACAGGCTTAGAATCAG 58 74270851 74270869 TCACTGCTTCTAGGACCAG 58 NA Rattus norvegicus 81 Nfkbie ENSRNOG00000019907 ENSRNOT00000026988 3 1 1 100 9 17830160 17830178 AACAGCATCTCGTCCACTC 60 17828786 17830097 TAAGAAAGGAGATCCTCGGC 59 NA Rattus norvegicus 81 Rita1 ENSRNOG00000037720 ENSRNOT00000057242 2 1 1 70 12 41486401 41486419 CCAAATCTCACACCAAGGA 57 41487985 41488004 GACTCATCACAGTAGGATGG 57 NA DesignNoJunction Rattus norvegicus 81 Pim2 ENSRNOG00000008177 ENSRNOT00000011207 1 1 1 83 X 15463959 15464536 CTTTGATGGGACAAGGGTG 59 15463894 15463912 AGTGACCAGACAGTAGCTG 59 NA Rattus norvegicus 81 Polr2f ENSRNOG00000011214 ENSRNOT00000015009 1 1 1 80 7 120384862 120389672 CTCTCCAGATTGCGATGTG 58 120389716 120389734 GTTCCTTCATGGCGATGAG 59 NA Rattus norvegicus 81 Krtap1-1 ENSRNOG00000012955 ENSRNOT00000037980 2 1 1 94 10 87503078 87503096 CCTACTGTGGACAGTCCTG 59 87503002 87503020 TTAACAGCTGGGCTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 3 1 1 70 16 27472243 27472261 CCCTCTGAGGAGAAGATCG 59 27472175 27472210 TCTTTAGCTCTGTAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000087792 2 1 2 80 1 166670092 166670579 GGTTAATTCAGCAGGTGACTG 59 166670032 166670053 CCTCATACTGGTCATCAAATGC 60 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000048764 ENSRNOT00000058323 2 1 1 92 3 19141171 19141363 CAGTATCACAGTCTTAGTGTCCA 60 19141415 19141433 GTGATGGTGACCTTCTCCC 60 NA Rattus norvegicus 81 Ptpn22 ENSRNOG00000019614 ENSRNOT00000026556 3 1 1 80 2 206375891 206380848 TCCCAAATCAGATCAACATCAG 59 206380888 206380907 TCAGCAAGAAAGAAGGACTC 58 NA Rattus norvegicus 81 Nup153 ENSRNOG00000001456 ENSRNOT00000001979 2 1 1 80 17 18388030 18388048 GGTGGCAAGATGAGAAGAG 58 18388089 18391082 CAATGGTACTTCTACTTCCTCC 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000076348,ENSRNOT00000016427,ENSRNOT00000079929 2 3 3 80 1 135354657 135354675 CATCCTGAAGCACCATGTC 59 135336648 135354613 GTCAGCCAATATCCTCGGA 59 NA Rattus norvegicus 81 St13 ENSRNOG00000019070 ENSRNOT00000025925 3 1 1 81 7 122613918 122618564 TCTAAATGATGGTGAGCTCCA 59 122613857 122613875 ATACAGAATGGCCAAGCGA 60 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611 1 1 3 80 1 65906565 65906584 GTCATCCCTGTCTGTATCCA 59 66004354 66133502 CTAGGTAGGGAAGATGAATAACTG 58 NA Rattus norvegicus 81 Prg4 ENSRNOG00000002385 ENSRNOT00000068148 2 1 1 80 13 67673778 67674144 CTTATCAAGACAAAGGCTTCCTC 60 67673720 67673739 CGGAAGTAACGACATTTGGG 59 NA Rattus norvegicus 81 LOC100911426 ENSRNOG00000032062 ENSRNOT00000043603 2 1 1 68 1 66963282 66963302 TGCCTATTAAGAGATGCAAGC 59 66963328 66963782 ACCTTAGAACTGGATCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Camkk2 ENSRNOG00000001309 ENSRNOT00000001774 2 1 1 81 12 39287868 39287886 AAGCCACTGTCTGAAGACC 60 39287925 39289571 TGATCTTCTGGTAGTGTAAGTACTC 60 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 3 2 2 80 X 156434862 156435189 TAGTTCAGATCCTAGCCCG 58 156435229 156435251 GTAGAAAGAGGACAGTATTCTGG 58 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087,ENSRNOT00000015084 1 2 3 80 1 136699332 136707669 CATCATTCCACACTATGGCTG 59 136699272 136699292 CAGACGATGACAAACACTCTC 59 NA Rattus norvegicus 81 LOC102550396 ENSRNOG00000030870 ENSRNOT00000043229 2 1 1 80 4 155729807 155729826 GCATTCGCCTATGTATTTGC 58 155728051 155729764 TTGAGACAGAGTCGACAGG 59 NA Rattus norvegicus 81 Prss42 ENSRNOG00000031971 ENSRNOT00000051211 1 1 1 88 8 119065661 119066081 CATTGCATACACAGCCGAG 59 119066133 119066151 TGGATGGGAATCACCAGAC 59 NA Rattus norvegicus 81 Anks6 ENSRNOG00000023309 ENSRNOT00000060005 2 1 1 81 5 62671157 62671175 GATGTTACTCTTCGAGCCA 57 62668386 62671113 GAACAAGTTCAGTGTCAGGA 58 NA Rattus norvegicus 81 Gsg1 ENSRNOG00000008518 ENSRNOT00000011295 3 1 1 80 4 169036825 169036845 CCTGTTTCAGAACCTCAACAG 59 169027663 169036783 GAACTCCATCTCCTGGGTG 60 NA InUTR Rattus norvegicus 81 Syce3 ENSRNOG00000042056 ENSRNOT00000064328 3 1 1 60 7 130368723 130368741 AGGCTGTTGGAAGAGATGG 59 130361082 130361100 CCATATCGTAGGCCATCCA 59 NA DesignNoJunction Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000081829 1 1 2 64 1 81399608 81399626 AAGCCTTGGATGAGATGCT 59 81399654 81399672 TTACTGATTGTGCTCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgm5 ENSRNOG00000015406 ENSRNOT00000020763 1 1 1 80 1 242716604 242716623 CTTATTTCCGTCAGATGGGT 57 242648692 242716562 TTGATTTAGCCACTCTGTCC 58 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 2 1 1 60 9 24506386 24509643 CGATCACAATACTAACAGGCA 58 24506346 24506365 TTCCTCAAGTCCAAGCTACC 60 NA DesignNoJunction Rattus norvegicus 81 Hmgcl ENSRNOG00000009422 ENSRNOT00000012853 2 1 1 80 5 154303141 154303161 TATAGAGGAGAGTTTCCAGCG 59 154303201 154304989 GAGACATACCCTCTCACAGAG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000088023 3 2 6 133 12 41229496 41229514 AATGTGGCTGGTTCAAACC 59 41228378 41229399 AACTCGACCTTTGTCAGCA 60 NA Rattus norvegicus 81 Ust5r ENSRNOG00000061890 ENSRNOT00000051289 3 1 1 80 1 224521469 224525827 CTTATACTCACAAGGTGGCTG 59 224521409 224521429 AAGTTCCTTTAAGCCCTTCTG 58 NA Rattus norvegicus 81 AABR07027342.1 ENSRNOG00000024499 ENSRNOT00000072904 1 1 1 80 17 25424332 25437791 ATCATTGAGGTGTTTGGTGAC 59 25437832 25437851 TCGTATGTGCTTCTCAACAG 58 NA Rattus norvegicus 81 Bcl2l14 ENSRNOG00000028632 ENSRNOT00000032229 3 1 1 80 4 168172076 168172096 GAGAGTGTCCCAAAGATTCTG 59 168172136 168175031 GTCTTCTCCATCTTTCTTCGA 58 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000077568 1 1 2 118 10 88537802 88538473 GAACCATGTTGTGGGTTCTG 60 88539130 88539148 CACACTTGTTGCCAAGGAC 60 NA Rattus norvegicus 81 Phf12 ENSRNOG00000009566 ENSRNOT00000056234 3 1 1 80 10 64820770 64821851 CCATCATCAGATGGCAAGG 58 64820708 64820726 AGAGTTGGCTGGGAAAGAG 59 NA Rattus norvegicus 81 Cxcl14 ENSRNOG00000011984 ENSRNOT00000016009 3 1 1 80 17 9113804 9113824 CATCCTAAGCTGCAAAGTACC 59 9113865 9116638 CTACTCTTCGTAGACCCTGC 59 NA Rattus norvegicus 81 Slc25a21 ENSRNOG00000008931 ENSRNOT00000034342 2 1 1 80 6 77630182 77650868 ATCCAGTAAGGATCCAACCT 58 77630121 77630139 TTAAAGACTGAGCCCACTG 57 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 1 2 2 80 1 219124079 219124581 CTTGAAGTCAACAGATTTGCC 58 219124622 219124641 AATGGATGAGATCTTGGCCT 59 NA Rattus norvegicus 81 Abcb9 ENSRNOG00000001082 ENSRNOT00000045223 2 1 1 82 12 37947251 37955631 GAATACCTGATTCAGCAGGC 59 37955676 37955694 TCTACAGTACTCAGCCGGT 60 NA Rattus norvegicus 81 Six4 ENSRNOG00000007250 ENSRNOT00000050138 2 1 1 80 6 95994076 95994094 CCAGTTCCTTAATGGGAGC 58 95989456 95994033 GAAAGATGACCTTGTGAAGC 57 NA Rattus norvegicus 81 Lrp3 ENSRNOG00000011451 ENSRNOT00000015384 3 1 1 82 1 91451860 91452190 CTCCTATATCCGAGGGAAGC 59 91451797 91451815 GACCAGGCAAGCATTTACC 59 NA Rattus norvegicus 81 Gpr65 ENSRNOG00000003806 ENSRNOT00000005055 2 1 1 60 6 122255471 122255490 ATCCGTCTTTAACTCCATCC 57 122255512 122255531 TGCATCACAGTATTCGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr65 ENSRNOG00000003806 ENSRNOT00000005055 3 1 1 60 6 122255471 122255491 ATCCGTCTTTAACTCCATCCT 59 122255512 122255531 TGCATCACAGTATTCGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyve1 ENSRNOG00000026902 ENSRNOT00000030474 2 1 1 80 1 175672991 175673108 GACTTGCAGCTATGGATGG 58 175672929 175672947 CCATTCTTCCCACACTTGG 59 NA Rattus norvegicus 81 AABR07065789.3 ENSRNOG00000058824 ENSRNOT00000040556 1 1 1 60 6 141320848 141320869 GCTCTATCTTCAAATGAACACC 58 141320809 141320828 TCTTGCACAGTAGTAAGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab15 ENSRNOG00000007364 ENSRNOT00000010043 3 1 1 81 6 99848689 99848707 CTGGCTAAGGAGTATGGCA 59 99848472 99848644 TCAGACGAGTGAAGGACTC 59 NA Rattus norvegicus 81 Impg1 ENSRNOG00000012479 ENSRNOT00000017048 1 1 1 80 8 87832499 87832517 ATGACACAGACCTCAAGGA 58 87829551 87832457 GTTTACTTTCCAACTCAGCTC 57 NA Rattus norvegicus 81 Prr18 ENSRNOG00000024149 ENSRNOT00000033528 1 1 1 130 1 52991558 52991576 CTCTAGCTGTGGCTGTCAG 60 52991446 52991464 CTTCTCATTGAGCAGCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 1 2 2 80 1 250573182 250573201 GGATAGAGCACCAATAGGCA 59 250565969 250573139 TCAACCACTTCTCCCACTC 59 NA Rattus norvegicus 81 Col28a1 ENSRNOG00000033618 ENSRNOT00000045270 1 1 1 80 4 34156474 34171269 GGATTTCAAGGAAATAAGGGTGAG 60 34156417 34156435 ACCTTGCTGTCCAATACCA 59 NA Rattus norvegicus 81 Tfap2a ENSRNOG00000015522 ENSRNOT00000041960 3 1 1 81 17 24660034 24661868 ACTGTAATTAAGAAAGGCCCTG 59 24661909 24661928 GGTTGTCCTTGTTGATAGGG 58 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884,ENSRNOT00000033265 2 2 2 80 4 68811659 68812943 TTCAAGGGCAATGTTACCA 57 68811597 68811615 CGATGCAGCATCAAATGTC 58 NA Rattus norvegicus 81 Vom2r53 ENSRNOG00000007730 ENSRNOT00000010203 2 1 1 81 7 13168918 13170099 ATTTCCTTGGCAGCTTCAC 59 13170143 13170162 TTTCCAGTCCAGAATCACAC 58 NA Rattus norvegicus 81 RGD1559921 ENSRNOG00000006599 ENSRNOT00000008621 1 1 1 60 6 103616177 103616195 TTTAGCGACATGAACGACC 58 103616135 103616156 CACCAATCTTACTGATGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559921 ENSRNOG00000006599 ENSRNOT00000008621 2 1 1 60 6 103616319 103616338 CCATGTTCATCAGGAACACC 59 103616278 103616297 TCAGAGTGAAACTCCTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif6 ENSRNOG00000011453 ENSRNOT00000015584 1 1 1 80 9 13232972 13248238 AAGATCTGCCGAAAGTGAC 58 13232910 13232929 TTGTTGCCTGATGAAGAGAC 58 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349,ENSRNOT00000056051 2 2 2 80 4 157130830 157130848 GATCCACAGCCTCAGTACC 60 157130892 157132617 CTGACTTCCCTCCATGAGC 60 NA Rattus norvegicus 81 Olr1486 ENSRNOG00000055055 ENSRNOT00000083439 2 1 1 60 10 60309139 60309157 TTTGGACTCCCATCTCCAC 59 60309097 60309117 ATCAGAGAAAGACAAGTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Loh12cr1 ENSRNOG00000006505 ENSRNOT00000008645 3 1 1 86 4 168440825 168462924 TCAAAGAGATGGATCTGTCCG 60 168462970 168462990 GGATCTGTTCAGCGTATTTGG 60 NA Rattus norvegicus 81 Slc35b2 ENSRNOG00000019900 ENSRNOT00000026929 2 1 1 80 9 17825944 17825962 AGAGACAGCAGAATCCACC 59 17824773 17825901 GTCAGATAGGACACCTGGAG 59 NA Rattus norvegicus 81 Pigg ENSRNOG00000049895 ENSRNOT00000072386 1 1 1 80 14 2412746 2416316 AAGGAAACAATGGTTCAGCAC 60 2412686 2412704 CAATGTACGTGGCAACTGG 60 NA Rattus norvegicus 81 Tom1 ENSRNOG00000014093 ENSRNOT00000018880 3 1 1 80 19 14413521 14413539 CGAGTGATGTCAGAGATGC 58 14413581 14415623 GTTGAGTTCCTGTAGTAGCTC 58 NA Rattus norvegicus 81 Yaf2 ENSRNOG00000004773 ENSRNOT00000006621 2 1 1 82 7 134507061 134507695 GTCACAAGAGAACCAGACCA 60 134506998 134507016 TGTCAGGTCTCCAACAGTG 59 NA Rattus norvegicus 81 Mns1 ENSRNOG00000057867 ENSRNOT00000077613 3 1 1 80 8 79062605 79064926 CAAGTACGAGCAAATGAAACG 59 79064966 79064986 TTCTCTTCCTTCAGTAGCCTC 59 NA Rattus norvegicus 81 Fmc1 ENSRNOG00000005618 ENSRNOT00000007544 1 1 1 60 4 66276985 66277004 CTACCGGTACCTGGTTAAGG 59 66283725 66283743 TCTGCACAACTTCTCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Cdyl ENSRNOG00000032215 ENSRNOT00000048757 1 1 1 81 17 29683006 29683024 ATACCACCTTCGGACAGAG 59 29675555 29682961 ATCTCATTTGCAGACGCTC 58 NA Rattus norvegicus 81 Cdyl ENSRNOG00000032215 ENSRNOT00000048757 2 1 1 81 17 29757575 29757593 GTTCCTGCAACAGTCTCAG 59 29731076 29757533 TGTCAACAATACTTTCCACCTG 59 NA Rattus norvegicus 81 Rapgef5 ENSRNOG00000005271 ENSRNOT00000007112 3 1 1 80 6 145619072 145621524 ACTAACCAGTTTGGAAGCG 58 145621568 145621586 GTCGATGACATACAGGTGG 58 NA Rattus norvegicus 81 Efhc1 ENSRNOG00000042729 ENSRNOT00000017393 2 1 1 80 9 27079232 27081297 CACCTTTGACAAACAAGTCCT 59 27081339 27081357 ATGTAGTGGCGACACTCTC 59 NA Rattus norvegicus 81 Olr1381 ENSRNOG00000047511 ENSRNOT00000049390 3 1 1 60 10 12235498 12235522 GAGTTGATGATTAATACAGAGGGAG 59 12235462 12235481 TCAGGATACAGACAAATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013095.1 ENSRNOG00000049260 ENSRNOT00000071934 3 1 1 60 2 222935938 222935961 TCAGGTATGAGATGTGATATCCAG 60 222935901 222935925 CAATAGATACAGATAGAGTGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029591.1 ENSRNOG00000057510 ENSRNOT00000086358 2 1 1 80 10 36580188 36580210 CCTTCGATGACTGCTTCAC 59 36580126 36580145 AAGAGATGATCTCCGTTCCA 58 NA Rattus norvegicus 81 Styxl2 ENSRNOG00000004453 ENSRNOT00000005884 1 1 1 60 7 62911325 62911343 TATCTCTAGAAGTGCCGCC 59 62911364 62911385 GTACTTCATCCCAAATGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem256 ENSRNOG00000037540 ENSRNOT00000056870 3 1 1 115 10 56446437 56446718 GAAGGAGCTCTTTGACAAGG 59 56446892 56446911 TAGTTCCAGAAGCTAGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Mir3586 ENSRNOG00000035457 ENSRNOT00000053580 3 1 1 60 7 114485556 114485574 AGTATGACGATCCCTGTCC 58 114485596 114485616 CAGTCTAGTATGTCTCCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pip4k2c ENSRNOG00000005138 ENSRNOT00000067774,ENSRNOT00000079327 1 2 2 80 7 70487580 70487755 TATGACCTCAAGGGCTCTC 58 70487030 70487050 CATATCCTTCAGTGTTGGCAG 59 NA Rattus norvegicus 81 Oaf ENSRNOG00000009243 ENSRNOT00000012826 1 1 1 125 8 47513965 47513983 TAACTTCAGTCAGGGAGGC 59 47512649 47513876 ACAGAACTGTCCACACCTC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000010482,ENSRNOT00000079769 3 4 4 81 14 80071135 80071781 TAGCAGGAAGAAGACAACGT 59 80071073 80071091 AGACTGACTGTCCAAGTCC 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315 2 1 2 80 16 10949953 10951225 CTTCTGCAGGAATAGAGGC 58 10949891 10949909 AACGACATAAGGAAGTCGC 58 NA Rattus norvegicus 81 Ica1 ENSRNOG00000008628 ENSRNOT00000011651,ENSRNOT00000077329 2 2 2 80 4 34671774 34674300 AGCAACATATCAGACCACTC 57 34671713 34671731 CCTTTGAAGCTCTCATGGA 57 NA Rattus norvegicus 81 RGD1564469 ENSRNOG00000031358 ENSRNOT00000040909 3 1 1 60 2 206903857 206903875 GGCCAAAGCAAAGGAAGAG 59 206903899 206903917 GTCGAAGAGACCGAATCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410 2 2 6 95 20 4612467 4613895 CTGGCATTCAGAAACAGCG 60 4613953 4613972 CACTGAGGAGACAGAAGACC 60 NA Rattus norvegicus 81 Apol11a ENSRNOG00000023122 ENSRNOT00000031568 1 1 1 80 7 118840560 118840578 AAGAGACCTGAAGAGCCTG 59 118837400 118840517 TCCTCCTCACTTGACAACTC 59 NA Rattus norvegicus 81 RGD1560883 ENSRNOG00000013821 ENSRNOT00000018479 1 1 1 76 6 146470295 146470316 TGGAGATTTGACAAACTTCCTC 59 146467255 146467275 CCAGGATCATTTCTTCATGGT 58 NA DesignNoJunction Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 1 3 3 80 19 15222453 15222472 AAGAGTTTCAACACAGTCCC 58 15222515 15223806 ATAGCCCATAAGCGTTGGA 59 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 2 2 2 80 1 201475940 201477155 TCATCTTCTATGCGGCAGG 60 201478412 201478432 ATTTGGATTCTGAAGGACAGC 59 NA Rattus norvegicus 81 Gprc5a ENSRNOG00000008412 ENSRNOT00000011134 3 1 1 80 4 168846203 168846221 ACCTCAACTCATGAAGCAG 58 168846265 168850441 ATCTCCTCAAGACCTTGGG 58 NA Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 2 2 2 80 13 80738303 80738321 AGAAGGACTAGAACCCACC 58 80727374 80738260 CCTTCTTCAACATGTTCCGT 59 NA Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 3 2 2 80 13 80738307 80738327 CCTGGAAGAAGGACTAGAACC 60 80727380 80738267 TCAACATGTTCCGTGAATCTC 59 NA Rattus norvegicus 81 Tectb ENSRNOG00000015671 ENSRNOT00000021041 3 1 1 80 1 275967857 275967878 TATCCAAGGTTTGGTTACACTG 58 275967919 275968926 TCCGTTTGTCACAGTTCAC 58 NA Rattus norvegicus 81 Rn60_1_1730.1 ENSRNOG00000051149 ENSRNOT00000076834 3 1 1 60 1 166728081 166728101 TAGAGTTCACACTTCAAGCTG 58 166728121 166728141 CCACGTAGGTTAAGATTCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 1 2 2 80 7 119707425 119709380 CTTTGACAACCTTCGCCTG 60 119707363 119707384 TCCCAGCTTATGTTACATCTCC 60 NA Rattus norvegicus 81 Hebp1 ENSRNOG00000000024 ENSRNOT00000000025 3 1 1 81 4 168932954 168932973 GATCAGGAACTCACTGTTCG 58 168922831 168932911 ATAGGAGACGTCTTCCTTGC 59 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 2 2 2 80 7 134619427 134619445 TTGCCGAGTATGTAACGAG 57 134619487 134624162 TAGCCAAATTCATCTCCTCTG 58 NA Rattus norvegicus 81 Cmya5 ENSRNOG00000023803 ENSRNOT00000073710 2 1 1 80 2 22657606 22657625 CTTCTATGTGAGAGCCACCA 59 22656395 22657565 AATCTAGTTCCTCTGGTGGAG 59 NA Rattus norvegicus 81 Iqcd ENSRNOG00000001378 ENSRNOT00000001860 1 1 1 80 12 41493181 41493202 CAAAGTGGAGACAGAAATTGAG 58 41491132 41493141 AGGTCCTCGTATTCTTCCTG 59 NA Rattus norvegicus 81 Trim24 ENSRNOG00000013251 ENSRNOT00000047954 2 1 1 80 4 65683901 65684273 GTCTTCTCCCAGCATTTGTC 59 65684313 65684334 TCAAAGACAAGATCTCTTCCCT 59 NA Rattus norvegicus 81 Nphp1 ENSRNOG00000015756 ENSRNOT00000067727 1 1 1 80 3 120328814 120330620 AGTGTCCAGAAGAGCACAG 59 120328752 120328773 CGAAGTTTCACCAGAAGTTGAG 60 NA Rattus norvegicus 81 LOC100909936 ENSRNOG00000046925 ENSRNOT00000042551 1 1 1 84 14 514033 514802 AATCAAGTCCTAGGGTGCC 59 514848 514868 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 3 2 3 80 7 14540622 14540646 AGTTCCTGAAGTCTAAGACTAAGTC 60 14540682 14541014 CCTTTCCATGTTCATCCTTGG 59 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000007428 1 1 3 80 7 14568671 14568691 CTTGGAGTCCAAGACTAAGTC 58 14568731 14569411 TTTCCATGTTCATCCTTAGCC 58 NA Rattus norvegicus 81 Rn60_1_1734.1 ENSRNOG00000036817 ENSRNOT00000031043 1 1 1 60 1 167162372 167162390 TAGTCCACGATGTAGACCC 58 167162330 167162348 ATCTTTCAACACAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xkr4 ENSRNOG00000027276 ENSRNOT00000029503 1 1 1 96 5 16003760 16139193 GTCTGGAGGTATTTGCACAC 59 16003683 16003701 ACTCGTACACCATCTTCCA 58 NA Rattus norvegicus 81 Renbp ENSRNOG00000054765 ENSRNOT00000083442 1 1 1 80 X 156856215 156856233 AGATGACCGACAAGTATGC 57 156856277 156856923 CAACTTGTCCATCCCTCTG 58 NA Rattus norvegicus 81 Etv6 ENSRNOG00000005984 ENSRNOT00000007889 2 1 1 80 4 167754721 167856697 TAGCATTAAGCAGGAACGGA 59 167856740 167856758 ACATGAAGTGGAGTCGAGG 59 NA Rattus norvegicus 81 Sgk2 ENSRNOG00000033573 ENSRNOT00000041688 1 1 1 80 3 159372974 159373273 CTCAACATCATCTACAGAGACC 58 159374207 159374225 GCCGAAATCTGTCAGTACC 58 NA Rattus norvegicus 81 AABR07065656.2 ENSRNOG00000047577 ENSRNOT00000072566 3 1 1 119 6 138948234 138948252 AATCCCGACTGAGCATCAG 60 138948039 138948155 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 Nsg1 ENSRNOG00000005700 ENSRNOT00000008030 1 1 1 80 14 77383987 77394837 AGAGGTTTAAGGTCTCCGTG 59 77394878 77394898 ACACTTTGTAGACAACCAGGA 59 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 2 2 2 80 13 74829209 74861069 TAAAGTACCAGGCTTCTTCAG 58 74829149 74829167 GTGTTTCTGTCAAGCTTCG 57 NA Rattus norvegicus 81 Ccdc107 ENSRNOG00000017253 ENSRNOT00000023411 3 1 1 89 5 58995630 58995648 GCTGTTCAAGTGTTTGCAG 58 58997151 58997249 AGCTGTTGTTCTGACTGTG 58 NA Rattus norvegicus 81 Dok7 ENSRNOG00000022419 ENSRNOT00000035385 1 1 1 80 14 80940794 80940812 TGTTTGACTGCATTGTCCG 59 80937822 80940750 CAGAACTTGGGTCTGGGAG 60 NA Rattus norvegicus 81 Atxn1 ENSRNOG00000016998 ENSRNOT00000023140 2 1 1 94 17 19520512 19520531 GTACTGTGGAGAGGATCGAG 59 19520588 19531969 AACTTCGACACTGACCTGG 60 NA Rattus norvegicus 81 AABR07065923.1 ENSRNOG00000005826 ENSRNOT00000007683 3 1 1 60 6 146394488 146394507 CTCTAGTGTCCTCTGCTGTG 60 146394530 146394548 TTCGTTGGTTTCATGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r71 ENSRNOG00000046835 ENSRNOT00000049544 2 1 1 80 14 923731 923750 GGTCATTCCCATTTGTACCC 59 923791 972855 TCTCTGTCAATAAAGGGAGGA 58 NA Rattus norvegicus 81 RGD1562107 ENSRNOG00000024755 ENSRNOT00000038486 3 1 1 80 9 27320323 27322091 TTACGAGAAGGCCCTAAGAG 59 27322134 27322152 TCAAGGAGCTGTACATCCG 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756,ENSRNOT00000082008 1 3 3 86 3 14621468 14637125 TTCAATCCAAAGAACCGCC 59 14621400 14621418 CAGAGCTGTGTCGTAAGTG 58 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 1 3 3 81 19 15419657 15421199 TTCTTCAAAGGAGTGGGCT 59 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 3 2 2 81 9 92892553 92892575 CCTCAAGTTAATGATGAACCTCC 59 92892615 92893236 CACAAACACCTTGAACACGT 60 NA Rattus norvegicus 81 Eral1 ENSRNOG00000010673 ENSRNOT00000014386 2 1 1 80 10 65273066 65273084 CGTATCCTTGGATTCCCTC 57 65273128 65275102 ATTCTGCTCATCTCTGTGC 58 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 2 1 1 60 9 37057156 37057178 CTTCTCGTTTCAGTGCTTCTG 60 37057200 37057218 TTGGGATAGTGCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076,ENSRNOT00000090114 1 2 2 80 8 58149006 58149024 GGGATGATACCTGTGTCTG 57 58149066 58149175 TAAAGGCATATGAAGGACCTG 58 NA Rattus norvegicus 81 Mbl1 ENSRNOG00000011706 ENSRNOT00000015723 1 1 1 80 16 18740561 18741420 GAGCTAACCAACAAGTTGCA 59 18741461 18741481 CATCCTTTCATGGTTGGTCAC 60 NA Rattus norvegicus 81 LOC360933 ENSRNOG00000029734 ENSRNOT00000048329 3 1 1 81 14 41430609 41430627 TGAAGCAGAACTACAGGGA 58 41430672 41433861 ATACCGCTCCAGAATTCCT 58 NA Rattus norvegicus 81 Artn ENSRNOG00000019842 ENSRNOT00000026852 3 1 1 94 5 136762639 136762659 CATGATCCATTTGAGCTTCGG 60 136761279 136762583 CTTCTTGAGGCAGCAAAGG 59 NA InUTR Rattus norvegicus 81 AABR07037356.1 ENSRNOG00000048990 ENSRNOT00000072722 3 1 1 85 X 19385526 19385546 GTCCTGGATGAAGTTGATCAG 59 19385430 19385482 GAATCTTTCTTGTATGCCACAC 58 NA Rattus norvegicus 81 Casp14 ENSRNOG00000007352 ENSRNOT00000009643 3 1 1 81 7 13941157 13941175 TATGGATGCCCTAGAACGC 59 13941218 13941338 CAGAAATTGCTGAGCAGTAGG 59 NA Rattus norvegicus 81 Abcc2 ENSRNOG00000046727 ENSRNOT00000070861 2 1 1 80 1 263580314 263581861 TCTCAGTGGAATCAAGATCCT 58 263581903 263581921 TCTTTCTTCCGAATGCCCT 59 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 1 2 2 80 5 8989498 8990457 GATTGGTCAGATGGATTGCAG 60 8989438 8989458 GAAGACTCCTTGCAGTTAACC 59 NA Rattus norvegicus 81 Smap1 ENSRNOG00000049127 ENSRNOT00000071330 1 1 1 80 9 30075872 30083140 TAGGACTTGATGGTCCTGC 59 30075810 30075829 TGTCCAGATCATCACTCAGG 59 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 3 2 2 80 14 7234676 7235265 GAACACAAAGGATCTTCTGGA 58 7234616 7234636 CTTTCCTGGCTTAGAGTTACC 58 NA Rattus norvegicus 81 Fam122c ENSRNOG00000028011 ENSRNOT00000035398 1 1 1 80 X 157828198 157829047 CAAATCAAACAGGAAGAAGGGA 59 157828039 157828057 TATCTGCATTGCAGTGTGC 59 NA Rattus norvegicus 81 Fam50a ENSRNOG00000058439 ENSRNOT00000086921 1 1 1 80 X 156399575 156399596 CCATGCACCTAATGAAGAAGAG 59 156398195 156399537 TTATGTTCTCCTCTGCAATCCT 59 NA Rattus norvegicus 81 Crisp2 ENSRNOG00000013225 ENSRNOT00000017996 2 1 1 80 9 23514554 23514572 TGGAGTTGCTTACTGTCCC 59 23514614 23524911 ATCACGTTGTTACCCATAGGA 59 NA Rattus norvegicus 81 Tmem38b ENSRNOG00000028063 ENSRNOT00000034570 1 1 1 80 5 70665513 70668813 GAAGATGTCCTTCCCTTGC 58 70668857 70668875 GATATTGCCAGATGCCTGG 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000002812,ENSRNOT00000065535 2 3 3 80 11 31150616 31150635 TGTTCTCAAACCACAAGTCC 58 31149457 31150573 CTCTGGCACCTTTGAACTG 59 NA Rattus norvegicus 81 Prss2 ENSRNOG00000045612 ENSRNOT00000029319 2 1 1 91 4 70625784 70626165 GTCTTGGTGTGAACAACCC 59 70625711 70625730 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677,ENSRNOT00000066637 2 2 2 80 10 87245366 87245384 AAACGAGCTGATGGAACTG 58 87244356 87245324 TAGGATTGTTTCATAGCCGTG 58 NA Rattus norvegicus 81 Ptgfr ENSRNOG00000046468 ENSRNOT00000071195 1 1 1 91 2 257007894 257036264 GGAGTCCCTTTCTGGTGAC 60 257007821 257007839 CATTCGGAGAGCAAAGAGC 59 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 3 2 2 85 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122545 5122563 GTTGCCAACTCTTCCATGG 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000019997 3 1 3 80 2 208133784 208134860 CTCCACCATCAAGAACCAC 58 208134904 208134922 GGGTAGTTCTGCATTGAGC 59 NA Rattus norvegicus 81 Lrpprc ENSRNOG00000005877 ENSRNOT00000008200 3 1 1 80 6 7995244 7999847 GAAAGATTTCGCTGAGACCC 59 7995183 7995202 CTAACTTGCGCGATGATGAG 60 NA Rattus norvegicus 81 Slc22a14 ENSRNOG00000042259 ENSRNOT00000055928 1 1 1 80 8 127858818 127860178 GTACTGTTCAAGAGACTCCCT 59 127858758 127858776 CACATTGACTCCTCAGCCA 60 NA Rattus norvegicus 81 Slc22a14 ENSRNOG00000042259 ENSRNOT00000055928 3 1 1 80 8 127860948 127860996 CTTACATCCCTGAAGGAACTG 58 127860888 127860907 CAAGCTGAACAGTCCATGAG 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843 1 1 3 116 4 149957229 149970694 TCGTCTTCCTGAAGGTTGAG 60 149970773 149970791 TTTCAATAACGAACGCGGC 60 NA InUTR Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 2 2 2 80 3 9926777 9926795 CATGACGTCACAGATCACG 59 9914162 9926736 CCATCATGGAAATTCGATTTCC 58 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000091152,ENSRNOT00000034889 2 2 3 86 10 87350679 87350697 TGGTACGAAACCAATGCAC 59 87348389 87350632 ATCCTTAATCTGATCTTGCAGC 59 NA Rattus norvegicus 81 Trpm8 ENSRNOG00000019035 ENSRNOT00000025879 3 1 1 80 9 95473071 95473089 TCAAGATCAACACGAAGGC 58 95474547 95478438 GATCATTAAGCTTTGTGTCCAG 58 NA Rattus norvegicus 81 Trpm1 ENSRNOG00000015829 ENSRNOT00000021262 3 1 1 80 1 125040937 125044282 GAAGATCAACACGAGGCTG 59 125044323 125044344 ACGATAGAAACCACATTAGGTC 58 NA Rattus norvegicus 81 Wdr11 ENSRNOG00000020430 ENSRNOT00000027704 2 1 1 80 1 202806394 202808823 GTTAGTAGAGCCAGTGTGGT 59 202808866 202808884 GGCTGGTGTAGTAGGAAGG 59 NA Rattus norvegicus 81 Cebpz ENSRNOG00000005087 ENSRNOT00000006824 1 1 1 80 6 1526881 1528760 TTTGAAAGGTGGCAAGCAG 59 1526819 1526840 AGATTTGTATGTTCAGCTCCAC 59 NA Rattus norvegicus 81 Vipr2 ENSRNOG00000004317 ENSRNOT00000005876 2 1 1 80 6 143998816 144000136 TTCTTTAGAAGACACAGGTTGC 59 144000175 144000195 GAAATTAGAATGGGCATCCGA 59 NA Rattus norvegicus 81 Cfap57 ENSRNOG00000007037 ENSRNOT00000009196 2 1 1 80 5 137431113 137431132 GATTCACATCTTCACCACCA 58 137427520 137431073 CATACAAGTGAACGAATCTTCC 58 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 1 2 2 102 7 70479897 70480270 GGATCAAATGTCGTTCGTCC 59 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 Rhbdf1 ENSRNOG00000020594 ENSRNOT00000027965 1 1 1 80 10 15683685 15683703 ACTAACCACCCTCACATGG 59 15683747 15683975 GGAGGTGATCTCACACCTG 60 NA Rattus norvegicus 81 Rhbdf1 ENSRNOG00000020594 ENSRNOT00000027965 3 1 1 87 10 15683678 15683696 GAACCACACTAACCACCCT 59 15683747 15683975 GGAGGTGATCTCACACCTG 60 NA Rattus norvegicus 81 Tyk2 ENSRNOG00000032948 ENSRNOT00000041678 1 1 1 80 8 22135438 22135543 CCGACCAAGAGAAATCTCC 58 22135376 22135395 CTAAGCTGACTGAGGTTGAG 58 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 3 1 1 61 7 1737911 1737932 AAGAATCTGATAGGTGGAGGAG 59 1737858 1737889 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sema4g ENSRNOG00000014650 ENSRNOT00000019956 2 1 1 80 1 264746227 264746245 CTACTAGCTTCGAGGAGGG 58 264746288 264746452 GGCCTCCATCAATGATAAGG 58 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 1 2 2 87 8 117318881 117318900 GTCACAACCAGTGTTCAACC 60 117318950 117324009 GTACCTGCACCTGTACCTG 60 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799,ENSRNOT00000019555 2 2 2 80 14 81670403 81670421 CGGGAAACAACTTCAACCC 59 81667709 81670360 CACGATTTCATCTCCAACGG 59 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 2 2 2 80 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288260 206288279 CTCAATACCACCCAGGTCTG 60 NA Rattus norvegicus 81 Slc20a1 ENSRNOG00000018567 ENSRNOT00000025294 1 1 1 80 3 121735569 121735694 GATGGTACTATCAATGGTGCAG 59 121735735 121735753 GTTGATCTGGTTGCTGACG 59 NA Rattus norvegicus 81 AABR07033590.1 ENSRNOG00000040050 ENSRNOT00000061592 1 1 1 82 11 29284273 29298099 GGTTCCAGATATGGCTGTG 58 29284209 29284227 TAGCCAGAGCCATATCCAC 59 NA Rattus norvegicus 81 Sox2 ENSRNOG00000012199 ENSRNOT00000016236 2 1 1 250 2 121166622 121166640 TCCCATCCAAATTAACGCA 57 121166939 121166958 ACAATGGACATTTGATTGCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rasgef1c ENSRNOG00000003005 ENSRNOT00000059277 2 1 1 80 10 35437951 35437970 CTTTGAAGAGGAGTCCACCA 59 35438013 35440027 CTGTTTCCGTAGGTCTCGT 59 NA Rattus norvegicus 81 AABR07020443.1 ENSRNOG00000047721 ENSRNOT00000061779 1 1 1 80 13 26465991 26466009 GCAAAGCATCTGACAGCTC 60 26466050 26466376 GCTCATTTGTAGATTCACCCTG 60 NA Rattus norvegicus 81 Zfp398 ENSRNOG00000006703 ENSRNOT00000008743 3 1 1 80 4 77535728 77536085 TCATCTCCATGGATTATGCC 57 77536126 77536146 GGTCATCTGTACTGTGTTCTC 58 NA Rattus norvegicus 81 Galm ENSRNOG00000007023 ENSRNOT00000009221 3 1 1 80 6 2816057 2824853 AGAGGATTTGATAAGGTCCTCTG 60 2824892 2824911 CTCACCATCTGGACTGACTC 60 NA Rattus norvegicus 81 Zfp746 ENSRNOG00000007064 ENSRNOT00000009247 3 1 1 83 4 77743714 77743732 GGAAGACTGGCAGAAGGAG 60 77742848 77743668 TTGGAGATGGCATAGTCCAG 59 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 2 2 2 80 8 85444109 85444129 TTTCCAGAGTCTGCAATAAGG 58 85444169 85452652 GTGGAAGAAACCATGTTTGTG 58 NA Rattus norvegicus 81 Tmem213 ENSRNOG00000013616 ENSRNOT00000018331 1 1 1 105 4 65801624 65801642 CTCCTTCTACTTGTGCTGC 58 65806281 65807206 GAAGTCGACGTTAGCACAC 59 NA Rattus norvegicus 81 Zfp91 ENSRNOG00000012524 ENSRNOT00000016804 2 1 1 80 1 229615022 229615594 TGGCATTAGTAGTGATGAGGA 58 229614962 229614982 CTTGGGTCATCTTTGAATGGT 59 NA Rattus norvegicus 81 Fcrlb ENSRNOG00000003135 ENSRNOT00000004181 1 1 1 80 13 89290500 89290518 GGGTGTACCGATGTCAGAC 60 89287620 89290460 GCAGAATTAGCCAGTCATTAGAC 60 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 1 3 3 80 7 68447234 68449554 CCTGGCTGGTAAATTGCTC 59 68447172 68447193 CCTGATGATAACACGACTATCC 58 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 3 3 3 80 12 39866828 39867598 CTGTCATGGAGGTTTATCACC 59 39866768 39866788 TGATCTGGTACATCAGTTGGT 59 NA Rattus norvegicus 81 Mir135a ENSRNOG00000035529 ENSRNOT00000053652 3 1 1 62 7 32894949 32894968 TCACTCTAGTGCTTTATGGC 57 32894906 32894930 CATCCCTACATGAGACTTTATTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apof ENSRNOG00000033619 ENSRNOT00000041341 2 1 1 114 7 2689583 2689841 ACTATATGGGTGCTCAGCT 58 2689919 2689937 ATCGTAGAGACACCCTTCG 59 NA InUTR Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000089629,ENSRNOT00000014230,ENSRNOT00000083233 3 5 10 89 10 87121348 87122049 TTTAATGGTTCATCAGCGGA 58 87121278 87121297 GTGCTTTCCAGGAATTTCCT 59 NA Rattus norvegicus 81 Fcer1g ENSRNOG00000024159 ENSRNOT00000029179 2 1 1 80 13 89603536 89603554 TCCTTACCCTGCTCTACTG 58 89602391 89603333 AGACAGCATCTGATTTCTCAC 58 NA Rattus norvegicus 81 Tubg2 ENSRNOG00000006494 ENSRNOT00000008576 2 1 1 80 10 89070596 89070890 CAGTCTAGAGGGATTTGTGC 58 89070933 89070951 AGTCGCTCTAAGAGGTAGG 58 NA Rattus norvegicus 81 Entpd7 ENSRNOG00000016883 ENSRNOT00000064510 2 1 1 80 1 263483916 263483935 ACTGCACAGAGGATGTACTG 60 263483978 263486702 TGCCACAGTAATCCTGAGC 60 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 2 2 2 80 11 31654115 31654135 CAAGGTGACAGCTATGTTCTG 59 31654175 31656847 TGAATAGACAGGGATCCACTG 59 NA Rattus norvegicus 81 Ndufs2 ENSRNOG00000038372 ENSRNOT00000058423 3 1 1 80 13 89610209 89610229 CAGCCATATGATGTTTACGAC 57 89609486 89610169 ACACAGATACCTATCGTAGCA 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000082631,ENSRNOT00000024036 1 2 2 122 2 209446116 209446134 GCAAACGTTGTGATGAAGG 58 209446980 209446998 CATGACCATGTCACTAGCA 57 NA DesignNoJunction Rattus norvegicus 81 Nbeal2 ENSRNOG00000027880 ENSRNOT00000056130 2 1 1 80 8 118903493 118903511 GTTGGCTGTTGTACAGCTC 59 118903267 118903452 TAGATGAGGTGAAAGAGCTGAC 60 NA Rattus norvegicus 81 Hsd3b7 ENSRNOG00000019080 ENSRNOT00000025933 2 1 1 91 1 199250221 199250661 GGTCTACGTTGGCAATGTG 59 199250716 199250734 AGAAATACACCTGGCCACC 60 NA Rattus norvegicus 81 Tmem232 ENSRNOG00000031348 ENSRNOT00000034759 1 1 1 80 9 113132638 113161644 GATCTCTGATAACTGTGCGA 57 113132577 113132596 AGTTCCCATGACATCTTCAC 58 NA Rattus norvegicus 81 Arhgdib ENSRNOG00000005809 ENSRNOT00000007779 1 1 1 80 4 170914566 170917226 GGATGAAAGTGGATAAAGCTACG 60 170914508 170914527 CTACTGGAGTGAGGAACTCG 59 NA Rattus norvegicus 81 RGD1561998 ENSRNOG00000048440 ENSRNOT00000074805 2 1 1 80 2 149857500 149857521 GATACGCTCCTATGATTACCTG 58 149857562 149865551 GCAAGCCTGTAGTCTAGTC 57 NA Rattus norvegicus 81 Abca1 ENSRNOG00000018126 ENSRNOT00000024564 2 1 1 80 5 69906598 69906621 GGTTTAGCTGGTTCATTAGTAGTC 59 69904707 69906565 GATCTCCTAACTTCAAGATGATCAC 59 NA Rattus norvegicus 81 Tesc ENSRNOG00000001128 ENSRNOT00000001490 3 1 1 80 12 44148528 44149577 TTCTTCGACAACAGGAACC 58 44148466 44148486 CATGATAGTCAGGAAGTCCTC 57 NA Rattus norvegicus 81 Olr956 ENSRNOG00000053663 ENSRNOT00000085061 1 1 1 60 7 6754248 6754269 TTTCCTGCTTCTTACCTATCTG 58 6754209 6754227 GGTGAGTGTGATGATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc96 ENSRNOG00000006575 ENSRNOT00000008601 1 1 1 146 14 79445374 79445392 TTAGCTCCGAACCTCTGAC 59 79445087 79445105 ATTCATGCTCGTCTGAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Tmem174 ENSRNOG00000015472 ENSRNOT00000020879 1 1 1 83 2 28749629 28749647 AGACAATGCTGCGTTTGTG 60 28749384 28749402 TGGTCTGCATCAGAACTGG 60 NA DesignNoJunction Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000085275,ENSRNOT00000042200 2 2 2 80 14 77151863 77151882 GTTCCTCAGGACAAGATCCC 60 77151922 77160591 GACTAAGCCAGAGAAGATAGCA 60 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 1 2 2 80 2 87004041 87004059 ACATTCCTGGAGCAAGGAC 60 87004101 87009833 ATTGAGAGCTATTCCTGGGTG 60 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 3 2 3 82 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228639 47228662 CATCATATTCTTCCTCTTCCTCCT 60 NA Rattus norvegicus 81 Git1 ENSRNOG00000061270 ENSRNOT00000078730 1 1 1 80 10 62662743 62662763 CTAGTTGAGTGCCAGTATGAG 58 62662349 62662702 ATGCCCATTCTTGTGATCAG 58 NA Rattus norvegicus 81 Oasl ENSRNOG00000001187 ENSRNOT00000001570 3 1 1 80 12 47446830 47446849 GGACCAAGTACTACACCCTG 60 47445987 47446788 GGATAATGGGCCTTTCTCCT 59 NA Rattus norvegicus 81 Vom2r27 ENSRNOG00000048635 ENSRNOT00000036807 1 1 1 80 1 64668206 64679924 TCTCCAATGAGACAGATGTG 57 64668145 64668163 GTAGGCAGTGGATCTTCTC 57 NA Rattus norvegicus 81 Foxl1 ENSRNOG00000047125 ENSRNOT00000074430 3 1 1 61 19 53055913 53055931 CTTATAGCCATGGCGATCC 58 53055956 53055974 TGGTAGATGCCGTTCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps16 ENSRNOG00000021222 ENSRNOT00000028821 2 1 1 80 3 122966351 122966369 ATGTGTCAGGACCTTCGAG 59 122966410 122966558 CTGCTTGTATTGGGTATAGGTC 58 NA Rattus norvegicus 81 Rpgrip1l ENSRNOG00000011829 ENSRNOT00000015876 3 1 1 80 19 17138774 17140732 CATTCAGCTTCAAGAGAAGCA 59 17140772 17140792 TGCATGTTTAGCTCATCTCCA 60 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000074523 2 1 2 122 10 58862605 58862623 CTTCACTCTCCATGAGGCC 60 58862708 58868882 GAACACTGTTTCTGCTGGTG 60 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 3 2 2 131 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702046 21702064 TTGAATTGCTGCCTTTGCT 59 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 2 2 2 80 3 148714526 148717235 AGTACAAGCTGTATAGGCAC 57 148714465 148714484 GGTGAAACATCTTGTCACAG 57 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 3 2 2 80 3 148717271 148717289 AGCAGAGACCATACAGCTG 59 148714519 148717227 TGGCCATGTGCCTATACAG 60 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 2 1 1 60 3 161297854 161297873 TGTGGTAGATGTGTTTGCCT 60 161296548 161297831 CAAGCCATACTCCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Gpr182 ENSRNOG00000004311 ENSRNOT00000005693 3 1 1 134 7 71046628 71046646 CATTACCAAAGAGGGCAGC 59 71046063 71046530 GCATAGTGAGCTTAGCTGG 58 NA InUTR Rattus norvegicus 81 LOC103690258 ENSRNOG00000052978 ENSRNOT00000081964 3 1 1 60 7 9136016 9136037 TGGGACTCAAACTTGATTTCTG 59 9135977 9135997 GAAGTGTCACATAGGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0876.2 ENSRNOG00000026794 ENSRNOT00000036420 3 1 1 60 10 87792797 87792815 GAGCACAGCTATGGAACAC 59 87792755 87792775 CAGTATGCAGACAGTATAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap16-1 ENSRNOG00000061192 ENSRNOT00000071896 3 1 1 60 10 87920481 87920499 CCATCTGTCTACCCAGCTC 59 87920439 87920457 CTGTCCTCACAAGTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smchd1 ENSRNOG00000014319 ENSRNOT00000019359 3 1 1 80 9 119680115 119680743 GAAGCTCGGAATGACTCCT 59 119680053 119680072 ATTGGACACTCAGTCACCTC 60 NA Rattus norvegicus 81 AABR07006542.1 ENSRNOG00000021811 ENSRNOT00000029774 2 1 1 60 1 239319432 239319451 GCACAATAGCAAGAAAGCTG 58 239319391 239319411 GCATTATTCATGACACGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627,ENSRNOT00000021740 1 2 2 80 3 120639365 120663092 TTTACTATAAGGTGGTGACCGA 59 120663132 120663151 GAGACAACGAGATGACATGG 59 NA Rattus norvegicus 81 Hmgcr ENSRNOG00000016122 ENSRNOT00000022055 3 1 1 80 2 27483172 27483192 GTCTATAGAGATCGGAACCGT 59 27482367 27483131 CCTTGAACACCTAGCATCTG 58 NA Rattus norvegicus 81 Serpine1 ENSRNOG00000001414 ENSRNOT00000001916 3 1 1 80 12 22643994 22644012 GCAGGTGGACTTCTCAGAG 60 22644054 22645549 CTGATCATACCTTTGGTGTGC 59 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 2 1 1 67 8 55037844 55038756 CAGGTGCATCACTTCATGG 59 55038787 55038805 GAGTCTAGCCGACTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Krt14 ENSRNOG00000003899 ENSRNOT00000083895 2 1 1 80 10 88056655 88056675 GATGAGAAGTCAGTATGAGGC 58 88056437 88056615 AGCTCATCAATCTGAGTAAGG 57 NA Rattus norvegicus 81 LOC100912937 ENSRNOG00000037684 ENSRNOT00000029656 3 1 1 80 2 102419072 102419984 TACACAAATTGCTCAGAGTCC 58 102420025 102420044 TGAAGTCACGGTAAGAAAGC 58 NA Rattus norvegicus 81 Hectd4 ENSRNOG00000001352 ENSRNOT00000001826 2 1 1 80 12 40790709 40791541 ATCACTACAGACTCAATGACGA 59 40790650 40790670 ACTTGGTGATGAGGATACAGG 59 NA Rattus norvegicus 81 Hnrnpr ENSRNOG00000011910 ENSRNOT00000015971 2 1 1 80 5 154671412 154671430 ACAAGACACTGGTAGAGGC 59 154671474 154673672 AAGCTACCAACCCTGTCTG 59 NA Rattus norvegicus 81 Nlrp9 ENSRNOG00000021913 ENSRNOT00000029591 1 1 1 80 1 71875596 71878636 AGACACTGATGTTGTCTTACTG 58 71875537 71875556 GGTGTTTATTGCTCACAAGG 57 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 3 1 1 68 1 280637441 280637460 GAATCATTACGTGGTGGGAG 59 280637491 280639440 ACCTGAGTTTCCGTAAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 1 3 3 80 2 147957337 147957355 TGGACATCCGGACAAAGAG 59 147955479 147957294 CAAAGACCAAGACTCTCCCA 59 NA Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000066001,ENSRNOT00000086962 3 2 2 94 5 62141131 62141149 TTCTCTATCAGGGTGTGGG 58 62139562 62139580 ATCTGCTGTCCCATCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnj10 ENSRNOG00000007705 ENSRNOT00000010146 1 1 1 102 13 90751618 90751637 CACTTACTGGGCCTTCCTC 60 90751703 90751721 AATGAGAAGCACAATGGCC 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 2 1 2 80 19 19781790 19781811 TCTTCAAACTCTTCATCAGGTC 58 19779506 19781749 TGTTGCGTCAGAATCAACG 59 NA Rattus norvegicus 81 Cdk7 ENSRNOG00000018510 ENSRNOT00000025026 2 1 1 80 2 30722742 30725863 CTGACCTAGAGGTTATCATAAAGG 58 30722685 30722705 GAAGAGTCATCAGCATGTAGG 58 NA Rattus norvegicus 81 Il1rl2 ENSRNOG00000014683 ENSRNOT00000019880 3 1 1 80 9 47077990 47078008 GAGTTAACAACACCCTGGT 57 47078051 47078901 TCAGAGACAGATTGGTTTCG 58 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922,ENSRNOT00000017900 2 2 2 80 8 59491393 59494806 CTGAAAGAGAAAGTAGAGATGGGA 60 59494843 59494863 AACATCCCATGGAAACAACAC 60 NA Rattus norvegicus 81 Zc3h12d ENSRNOG00000016041 ENSRNOT00000065646 3 1 1 80 1 1969179 1969199 GACCAACACTAAGCAATTTCC 58 1969240 1970195 ATTTCTTGCCATAGGGACAG 58 NA Rattus norvegicus 81 Eif1b ENSRNOG00000018848 ENSRNOT00000025615 3 1 1 82 8 129158303 129159538 ACCTCCAATCTTTCGACCC 59 129159579 129159602 TATATGAATGTAGTCCTCAGTCCC 59 NA Rattus norvegicus 81 Pcsk7 ENSRNOG00000017478 ENSRNOT00000023677 2 1 1 80 8 50203575 50204148 CACCCAACTATAGCCCAGAG 60 50204191 50204209 CGTTCTCCTCATCAGGGTG 60 NA Rattus norvegicus 81 Ccnb1 ENSRNOG00000058539 ENSRNOT00000082846 2 1 1 80 2 30787626 30787644 GTGGTGATCCAAACCTCTG 58 30785814 30787583 TAACTGACTGCTCTTCCTCC 59 NA Rattus norvegicus 81 Kirrel2 ENSRNOG00000020864 ENSRNOT00000028306 1 1 1 80 1 88916381 88916645 GCTGGAAGTGTTGTATGGAC 59 88916320 88916338 CTGAAAGACGCGTCTTTCC 59 NA Rattus norvegicus 81 Oas1h ENSRNOG00000057769 ENSRNOT00000085747 2 1 1 80 12 41220193 41220212 AAAGTTCCTGTGGAATCGTC 58 41217294 41220153 TTCTCCTTACACAGTTGATACC 58 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000076146,ENSRNOT00000082010 1 3 6 84 10 89213319 89215772 CTTCCATATCTGGCACAGC 58 89213253 89213271 ATTCCATTCCACAGGAGCA 59 NA Rattus norvegicus 81 Hipk4 ENSRNOG00000020835 ENSRNOT00000028266 3 1 1 80 1 84328821 84335244 TCAGGGTAAAGGTGATCGAC 59 84335287 84335305 GGGACTGGATGTAAGGCTC 60 NA Rattus norvegicus 81 Map10 ENSRNOG00000028652 ENSRNOT00000031717 3 1 1 60 19 58507141 58507160 TCAAAGATCAGTGGTAGCCC 60 58507182 58507201 TTAAGCCATAAAGCAGCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frrs1l ENSRNOG00000043103 ENSRNOT00000031432 3 1 1 92 5 74013775 74029011 GTCAGAGGAGGGATACCCT 60 74013701 74013720 AAGCATCCCTTAGTCCTTCC 59 NA Rattus norvegicus 81 RGD1310262 ENSRNOG00000005619 ENSRNOT00000007519 1 1 1 177 19 25133118 25133136 GTCACTGCTAGAGCAGGAG 60 25132596 25132614 GTTCTCTGAGGCCTGTCTC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910402 ENSRNOG00000053897 ENSRNOT00000079287 1 1 1 60 2 35210226 35210245 CTATGATCGCTATGTTGCCA 58 35210185 35210206 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd12 ENSRNOG00000036934 ENSRNOT00000010641 3 1 1 80 3 146640226 146641532 AGCTGTACAAGGTGCTGAG 60 146637787 146637806 GTGTTCCTACTGAGTCACCC 60 NA Rattus norvegicus 81 Ddx5 ENSRNOG00000030680 ENSRNOT00000048490 2 1 1 80 10 94985149 94985171 GAAGTCTACTTGCATCTATGGTG 59 94984999 94985112 GCAATACAGATTTCCACACCTC 60 NA Rattus norvegicus 81 Nt5c3b ENSRNOG00000016475 ENSRNOT00000080006 2 1 1 80 10 88346940 88346960 ATTATCCGACAGATGAAGGTG 58 88344485 88346898 CAGGAAACCATCCTCACTG 58 NA Rattus norvegicus 81 Lrrc1 ENSRNOG00000005970 ENSRNOT00000007867 2 1 1 80 8 84761584 84761605 CAGAACTTAACATGCCTTTCTG 58 84748976 84761546 AGCCAGGTTATAGAGATTTCCA 59 NA Rattus norvegicus 81 LOC681006 ENSRNOG00000025953 ENSRNOT00000039453 1 1 1 80 1 279938156 279938177 CCCTTCTCCTAAAGTCTTACAG 58 279938012 279938115 CTTGGGAGTGTTTGACCTG 58 NA Rattus norvegicus 81 Smim12 ENSRNOG00000014352 ENSRNOT00000019224 3 1 1 60 5 145314420 145314441 GGAGGAGAAGAGTATCTTGGAG 59 145314461 145314480 CTTGCCTAGCATCTCATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr50 ENSRNOG00000015432 ENSRNOT00000020691 3 1 1 60 1 168014575 168014595 CTGTGCTCAAGTTGGTATGTG 60 168014535 168014554 GCCACAAAGAGTCCATATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631,ENSRNOT00000023610 3 2 2 81 1 211557902 211557920 CCACCAAATCTCAAGGCAG 59 211557963 211559536 AGGTAGACCTCTTTCTGAGTG 59 NA Rattus norvegicus 81 AABR07049960.1 ENSRNOG00000047376 ENSRNOT00000073637 1 1 1 82 5 146294390 146294409 AGACTGGAGAAAGAGGAGAG 58 146294454 146296058 TCTGCATCACTTTCCTCAC 58 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 1 2 2 80 2 210449991 210450468 CAGACAGCGGTATTGATTGAG 59 210449931 210449953 CTGAGTTGAATAGATGTTGCAGG 60 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 3 2 2 80 16 61765482 61768143 CCAATATACAACCAATACTGGCC 60 61768182 61768201 TCTTCTGGCTATGCAGTACG 60 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000005953 ENSRNOT00000054886 3 1 1 80 1 211943987 211945916 CAGACAACCAAGATAAGGACC 59 211943927 211943945 CAAGTGGCTCAAAGTGGTG 59 NA Rattus norvegicus 81 Smc2 ENSRNOG00000022325 ENSRNOT00000066226 1 1 1 80 5 68737376 68737394 AATTCTACAGCCACAGCTC 58 68737436 68738132 CTTACCAGTAACCTCTGTGTC 58 NA Rattus norvegicus 81 Pcsk2 ENSRNOG00000005438 ENSRNOT00000007249 3 1 1 80 3 137783743 137833222 CTGGCCTACAACTATAACTCTG 58 137833262 137833281 GTCATCTGTGTATCGAGGGT 59 NA Rattus norvegicus 81 Bmpr1a ENSRNOG00000052469 ENSRNOT00000079554 1 1 1 80 16 10760186 10761133 TGTATTACAGGAGGAATCGTGG 60 10760127 10760149 CATGTCTTCATAAGATGGGTCAC 59 NA Rattus norvegicus 81 RGD1309139 ENSRNOG00000020307 ENSRNOT00000027504 1 1 1 80 2 211329806 211330263 GATATGCAGGGAACCAAACTC 59 211330305 211330323 GATGGTAGTCCGGGAAGTG 60 NA Rattus norvegicus 81 Gpatch8 ENSRNOG00000021044 ENSRNOT00000050474 3 1 1 80 10 90427599 90433278 GGAAACAAGCTGAATGTGCA 60 90427538 90427556 CCTCTCCACCATCTTCGTC 60 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 3 2 2 80 10 59753210 59753320 ACATCCAGGAGGAGTTTCTC 59 59753149 59753168 CATGTAAGCTGAAGAAGGCG 59 NA Rattus norvegicus 81 LOC100363125 ENSRNOG00000021470 ENSRNOT00000036543 3 1 1 60 X 13992222 13992244 CTCAAATATTCTTGACCTGGCTG 60 13992261 13992282 GCTAATAAGCTTACTGCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl6ip6 ENSRNOG00000005074 ENSRNOT00000006774 2 1 1 80 3 38753187 38766890 TAGGTTCAAGAAACTGACTGG 58 38766932 38766950 GTGAGAGCAGCTACAACAC 59 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050505 ENSRNOT00000071864 2 1 1 60 2 155176034 155176052 TCGTTCTAGACCAACTGCC 59 155175992 155176013 TCAATTCCGTCATACTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075894 3 4 5 87 10 89176898 89177704 CATTTATCAATGGGTTTCCAGG 58 89177752 89177770 TTCCTCCTCTGTGTCTTCC 58 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 1 2 2 80 3 35791328 35791348 ACTGAACATGACATGACTGTC 58 35784857 35791289 AGCACCATTAATGAACTTCTCC 59 NA Rattus norvegicus 81 Ptrf ENSRNOG00000019778 ENSRNOT00000026783 2 1 1 80 10 88873960 88873978 AAGAAACTGGAGGTCAACG 58 88863308 88873916 CAGCTTGACTTCATCCTGG 58 NA Rattus norvegicus 81 AABR07013798.1 ENSRNOG00000030563 ENSRNOT00000052249 3 1 1 60 2 257295465 257295483 TCCATCTGTAGAAGGTGGA 57 257295507 257295525 TCTAACAAGCCTGCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntd1 ENSRNOG00000051150 ENSRNOT00000076865 3 1 1 80 10 89200258 89204897 GATCGTTGAGTTTGTCTTTCTC 58 89204937 89204956 TCTAGGATTTCTACGGCCTG 59 NA Rattus norvegicus 81 Mfsd9 ENSRNOG00000023129 ENSRNOT00000038915 3 1 1 80 9 47512093 47513338 GCTGGAATAGTAGGCTCCTC 60 47509897 47509915 TCCAACCACATCACTCCAG 59 NA Rattus norvegicus 81 Prpf38b ENSRNOG00000020438 ENSRNOT00000027738 1 1 1 80 2 211708586 211708606 CAAGAAAGACGGAAAGGAAGG 59 211708161 211708547 AGTGATCTTCTTGGAGATCTGG 59 NA Rattus norvegicus 81 Spryd3 ENSRNOG00000010793 ENSRNOT00000055320 1 1 1 80 7 143733155 143733176 TCAGTACTACAGCTTGGATCAC 60 143732842 143733117 TTGTATAGCTTGCCATCATCAG 59 NA Rattus norvegicus 81 LOC100909517 ENSRNOG00000046230 ENSRNOT00000068228 3 1 1 60 X 24629760 24629779 CTCTTGACTTTCCACCAACC 59 24629800 24629820 GTGCTGTGTTTCTTAATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 2 2 2 83 10 91098712 91100969 TACTTCCTCCGAGGGTACC 60 91098647 91098667 GTGCTTCATGTACTTGAGCAG 60 NA Rattus norvegicus 81 Gstp1 ENSRNOG00000018237 ENSRNOT00000024601 1 1 1 80 1 219293396 219293415 TTTGAAGATGGAGACCTCAC 57 219293007 219293356 TTTCCCATAAAGCCCTAAAGAG 58 NA Rattus norvegicus 81 Mixl1 ENSRNOG00000003176 ENSRNOT00000004244 3 1 1 81 13 97280180 97281898 AGTCAAGGATCCAGGTGTG 59 97280117 97280136 GAGGATAAGGGCTGAAACGA 60 NA Rattus norvegicus 81 Mars ENSRNOG00000025459 ENSRNOT00000035486 3 1 1 80 7 70588540 70588558 GGTCTTTCCTTGTTCAGCC 59 70588232 70588499 TAGTTCAGGTATTCTGTAGCGA 59 NA Rattus norvegicus 81 Ggt6 ENSRNOG00000015210 ENSRNOT00000045100 3 1 1 62 10 58996669 58996687 GTGCATCCTCATGCAACAG 60 58997009 58997031 TGAGGAGCTATTGTAGAAGAGAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055353.1 ENSRNOG00000047912 ENSRNOT00000073169 1 1 1 80 7 1720312 1721485 GGACTACAGGCTGGATCTC 59 1721528 1721547 TTGGTCACCATTTGCATAGC 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268,ENSRNOT00000014147,ENSRNOT00000038549,ENSRNOT00000058727,ENSRNOT00000081522,ENSRNOT00000082355,ENSRNOT00000013991 2 7 7 80 16 64052176 64052930 GACTCCTAGTCACAGCTGG 59 64052972 64052992 ACCGAAGACATCATGATTACG 58 NA Rattus norvegicus 81 Dalrd3 ENSRNOG00000020159 ENSRNOT00000027318 1 1 1 80 8 117356782 117356800 CTGTGTCTGAAGGAACTGG 58 117356842 117356935 ATCTTCAGTCACCAAACAGTG 59 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453,ENSRNOT00000061657 3 2 2 80 7 3378810 3378828 CACTCTACAGCTTTGACCG 58 3378870 3379100 ACATGTACTCCTCCAGAAAGG 59 NA Rattus norvegicus 81 RGD1308544 ENSRNOG00000047406 ENSRNOT00000071842 2 1 1 80 1 37725762 37725780 TTCAGCTACATCCCTCCAC 59 37704184 37725718 GGAGACAATCCCTGTCTGG 60 NA Rattus norvegicus 81 LOC100361231 ENSRNOG00000029588 ENSRNOT00000042579 1 1 1 80 1 217725408 217725429 GCTCCTTGTCTATAGAGCAGAG 60 217725469 217728105 TCGATGTCGACTCTTCTTGG 60 NA Rattus norvegicus 81 LOC689065 ENSRNOG00000036641 ENSRNOT00000054848 3 1 1 109 1 219744618 219745333 AGACAATACCAACAGCAGGT 59 219744528 219744546 CTGTTGGTGTCCAACAAGG 59 NA Rattus norvegicus 81 Coro1c ENSRNOG00000000697 ENSRNOT00000000886 1 1 1 80 12 48547607 48548637 CATTTACTTATGTGGGAAGGGTG 60 48548676 48548695 TTGAGGTAGTGCACGTATGG 60 NA Rattus norvegicus 81 LOC100909677 ENSRNOG00000038396 ENSRNOT00000058473 1 1 1 60 X 45615567 45615587 GCAAACCAACCAACTTATGAC 58 45615608 45615627 GCTTAGACGGAAGATGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armcx1 ENSRNOG00000037709 ENSRNOT00000029833 1 1 1 60 X 105538785 105538806 TTGCTTTCCTATTCTTTCCCAG 59 105538827 105538845 TGGTGAAGTGATTTCCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pus1 ENSRNOG00000037500 ENSRNOT00000056780 3 1 1 81 12 51941815 51944542 GATTCTGGGACTGAAGAGGG 60 51944584 51944604 AGGTAGCATGTAGCAATAGGT 59 NA Rattus norvegicus 81 Lrp1 ENSRNOG00000025053 ENSRNOT00000031005 1 1 1 80 7 70851241 70852355 GTCACCCACCTCAATATTTCAG 59 70851182 70851200 GGTCCAGTACACATTCCCA 59 NA Rattus norvegicus 81 Mtx2 ENSRNOG00000001559 ENSRNOT00000002134 1 1 1 80 3 61811823 61811841 TCAACAACATGCTGCTGAC 59 61812353 61812756 ACCTAGCAAGAGTGATCTCC 59 NA Rattus norvegicus 81 AABR07029943.1 ENSRNOG00000031597 ENSRNOT00000047762 2 1 1 87 10 60684721 60684739 GTACACAGTGGTGACTCCC 60 60684651 60684675 GCAGATAACTCTTAGGCTTAAAGG 59 NA Rattus norvegicus 81 Arhgap33 ENSRNOG00000024677 ENSRNOT00000034001 1 1 1 80 1 88983915 88983934 CAAGACACAGTGCTAACACC 59 88982905 88983872 GCTCCATAGACCGTAGCAG 60 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000087615 3 1 5 60 20 4806477 4806496 CGTTTCGAGGTCAACATCAG 59 4806332 4806457 AATCACTGTAGGAGGAAATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Epn1 ENSRNOG00000015753 ENSRNOT00000021286 2 1 1 83 1 72298676 72299256 AGGAGCACGATAAGGAAGAG 59 72298612 72298630 CAGTCTCCCTCTTGCTCTC 59 NA Rattus norvegicus 81 Olr698 ENSRNOG00000006445 ENSRNOT00000008435 2 1 1 60 3 78235671 78235691 CTGTTTGTCACATTCTTGCTC 58 78235631 78235649 CCATGATGAGCAGATTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr114 ENSRNOG00000048293 ENSRNOT00000047399 2 1 1 60 1 168710175 168710194 CTTCCTTCAAGAGATCAGCC 58 168710134 168710155 CAAACCGTGAATGAAGTAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcaim ENSRNOG00000004085 ENSRNOT00000005440 2 1 1 80 8 131860543 131860562 TTTACTGGGTTCAAGGACCC 60 131860605 131865547 GCTACCTAACCAGGACGTG 60 NA Rattus norvegicus 81 Olr1088 ENSRNOG00000028146 ENSRNOT00000012907 2 1 1 60 7 14117566 14117584 TGTTCCTCCTCACCTACCT 59 14117524 14117543 TGGATGATGGTGATGATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erich3 ENSRNOG00000009533 ENSRNOT00000012638 1 1 1 80 2 261004125 261010971 ACTGCTTGAGAAAGACACC 58 261011013 261011033 CCATTCAGATAGAAGGTGAGG 58 NA Rattus norvegicus 81 Chrnb4 ENSRNOG00000014427 ENSRNOT00000019458 2 1 1 80 8 59617043 59617163 CTGGCTGAAACAGGAATGG 59 59616981 59617000 GGGATCCTCAGAATGTTCAC 58 NA Rattus norvegicus 81 Hnmt ENSRNOG00000005223 ENSRNOT00000007471 2 1 1 80 3 905792 909614 CTTGTGTCAGGAACTAGTGG 58 905731 905749 ATACTGGCAGAGGTCATCC 59 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487,ENSRNOT00000085210 2 2 2 80 10 95259395 95261696 GATGAGTCCAAGTTCTATATTGGC 60 95259338 95259356 CTCCTTCTCTGTGATGCCA 59 NA Rattus norvegicus 81 Tbx10 ENSRNOG00000017944 ENSRNOT00000024129 2 1 1 87 1 219243700 219243718 GAAGATAGTGGGCATGGAC 58 219243769 219244071 GAAGGCGTACCTGTATCTC 57 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 3 2 2 80 16 32457626 32457644 GGAGCAGGTGCTATTATGG 58 32457687 32490245 ATAATGAGTTCCAGCTGCTG 58 NA Rattus norvegicus 81 Galp ENSRNOG00000022129 ENSRNOT00000034854 3 1 1 83 1 71354732 71354750 CTCCCTTATTCCCGCTCTC 59 71352670 71354685 TATGCGCAGATCTCCAGTC 59 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822,ENSRNOT00000091791 3 2 2 80 8 132136631 132136651 GAGCTTGATCCAATGACATCC 59 132136690 132139376 CAATACAACCTCTACACCAGAC 59 NA Rattus norvegicus 81 AABR07055511.1 ENSRNOG00000045896 ENSRNOT00000072277 1 1 1 60 7 4620157 4620178 TAATTATCTTCCTCACCCTGCT 59 4620197 4620217 CGGAGAAAGAAGTACATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359968 ENSRNOG00000048885 ENSRNOT00000060443 3 1 1 102 8 37209171 37210029 GCTCCCTACAAGCTTTGAC 59 37209087 37209105 CACTTCTCACCAGGTTGAG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 1 2 2 80 9 53704930 53706122 CTGATGAGGAAGAAGATAAGACG 59 53706161 53706180 GGTCGATAGTTGCTATGGGA 59 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322,ENSRNOT00000019180 1 2 2 80 9 46739557 46739575 ACACCATACTGGATGGCTC 59 46739617 46740286 CCAGAGGTCACTTCTGTAGTC 60 NA Rattus norvegicus 81 Ppp2ca ENSRNOG00000005389 ENSRNOT00000007621 2 1 1 80 10 37542434 37542455 GTTTATGGGAGACTATGTGGAC 58 37540277 37542394 CGGTAACGAACCTTAAGAGC 59 NA Rattus norvegicus 81 Dcaf7 ENSRNOG00000042245 ENSRNOT00000063858 2 1 1 80 10 94242859 94242880 ACAAGAATTCAGACTTCTGTGC 59 94242920 94243384 TGCTTGAGGTTCCTAGAAGG 59 NA Rattus norvegicus 81 Topaz1 ENSRNOG00000025601 ENSRNOT00000036545 1 1 1 80 8 131789961 131790721 AAGAGACAGAAGCCAAAGAG 58 131790764 131790782 TTCTTACCAGGTCAGTCCC 58 NA Rattus norvegicus 81 Tmem42 ENSRNOG00000032027 ENSRNOT00000040475 3 1 1 81 8 132106478 132107064 GGAGCCAGGTGAATATTGG 58 132107107 132107127 CTAAAGAAGGTCCACATCAGG 58 NA Rattus norvegicus 81 Melk ENSRNOG00000013598 ENSRNOT00000066277 3 1 1 80 5 59812247 59812265 TCTCTTGAACCATCCCTGG 59 59812308 59819269 TCAAGGTGAGTCAAAGAAGC 58 NA Rattus norvegicus 81 Dcaf13 ENSRNOG00000004301 ENSRNOT00000005803 1 1 1 80 7 78024821 78024840 GGGAAGGAATTTGTGTCTGC 60 78024883 78036428 ATACACTTCCCTGCTTCGG 60 NA Rattus norvegicus 81 S100pbp ENSRNOG00000007099 ENSRNOT00000009436 1 1 1 80 5 147336897 147340921 TTACCACACGAAATTATGCCC 59 147336837 147336855 GCTTGTTTCTGTCAACCCA 59 NA Rattus norvegicus 81 Fes ENSRNOG00000011683 ENSRNOT00000016032 3 1 1 80 1 142178637 142179033 TCATCCAATCCTCAGATAACCTG 60 142178579 142178597 ACAGCAGGTGAGTGATGAG 59 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 1 2 2 80 1 6743474 6743494 AAATCTGAGTTTGTGCGAGAG 59 6739991 6743434 TCTCTGCATATCTTGGTCCAC 60 NA Rattus norvegicus 81 Unc45a ENSRNOG00000012357 ENSRNOT00000017407 3 1 1 80 1 142123585 142124740 CAGAGCACTAGTGGGACTC 59 142123523 142123542 GTAGAGCCTTCAGCAAACTG 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 1 3 3 80 10 82240889 82240907 TGTCACAGTGGAAGAACCT 59 82240434 82240850 GTCAATGAGTCTAGAAATACCGTG 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 3 3 3 80 10 82234806 82236146 TGTACCAGATGTGTTTGCAG 59 82234745 82234766 CTAGAAGACTTCTTAGCCACAG 58 NA Rattus norvegicus 81 Sf3b1 ENSRNOG00000013516 ENSRNOT00000019126 3 1 1 80 9 61607410 61607529 AACATAGAGGAAAGGGTCTGG 59 61607350 61607369 AGTTGGCATATTCTGCATCC 58 NA Rattus norvegicus 81 Prss46 ENSRNOG00000020981 ENSRNOT00000028479 1 1 1 80 8 119126440 119126676 CTGCTTACAAAGATCTAAGAACCC 60 119126715 119126733 TCTGAGGAGCTGTTGTCTG 59 NA Rattus norvegicus 81 Nefh ENSRNOG00000008716 ENSRNOT00000011604 1 1 1 80 14 85188650 85190630 GTTCCGAGTGAGATTGGAC 58 85188588 85188606 GTTATCTCCTCTTGGGCAG 57 NA Rattus norvegicus 81 MGC94335 ENSRNOG00000015983 ENSRNOT00000021533 3 1 1 80 9 64101583 64103666 GTGCGAGTTATGAATTTCAGAG 58 64103707 64103725 ACTTTGAGTGCTCAATCCG 58 NA Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000073072 3 1 2 82 12 50393161 50396978 ATCAGGATGGATTCCCAGG 59 50393097 50393115 TCCTCTTGGATCTCCATGG 58 NA Rattus norvegicus 81 Hhatl ENSRNOG00000019404 ENSRNOT00000026261 1 1 1 80 8 130424967 130424985 AAAGTGCATTACCGCACTC 59 130423093 130424825 TACACGTATTTGCAAAGCCA 59 NA Rattus norvegicus 81 Prss45 ENSRNOG00000029649 ENSRNOT00000043249 3 1 1 81 8 119117725 119118001 CCGTGCTATGGAGATCCTG 60 119118046 119118064 TCTCCCACGAGAATATGCC 59 NA Rattus norvegicus 81 Ykt6 ENSRNOG00000014785 ENSRNOT00000020693 2 1 1 80 14 86199250 86200967 AGAACAAGAGTACCTTTGCC 58 86201010 86201028 GAAGGGTATTCGCTGTCAG 58 NA Rattus norvegicus 81 Cspg4 ENSRNOG00000017208 ENSRNOT00000023326 3 1 1 84 8 61532608 61550892 GATCTACAGCTCCTGCCTC 59 61550938 61550958 AGCAGTAAGTCTACTCTGGTC 59 NA Rattus norvegicus 81 Als2cl ENSRNOG00000033921 ENSRNOT00000046745 3 1 1 80 8 119168532 119169186 TCTTAGGAAAGGGCAAGGT 58 119169229 119169248 ACAGTCCTTTATCTGTCCCA 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 1 4 6 103 5 158103016 158103034 TAATCCAGTTTGTGCCAGC 59 158103101 158105126 TTTAAAGGTGGGCACACTG 58 NA Rattus norvegicus 81 Ufsp2 ENSRNOG00000012087 ENSRNOT00000016723 2 1 1 80 16 49471005 49471023 TCGGGTCTATTGAAGTGCA 59 49468709 49470964 CTGAACCTTGATTGACAAACAG 58 NA Rattus norvegicus 81 Myo6 ENSRNOG00000011852 ENSRNOT00000016428 1 1 1 80 8 87680960 87685383 TTCCGACTCACTATTCCCA 58 87685427 87685445 GTGCCTGATGATAAAGCCT 58 NA Rattus norvegicus 81 Kif15 ENSRNOG00000060356 ENSRNOT00000089278 1 1 1 80 8 132072778 132075911 GAGACAAATGACAAAGGTCTG 57 132075953 132075971 TAACTTCTCGGTGCTTGTG 58 NA Rattus norvegicus 81 LOC100910294 ENSRNOG00000046661 ENSRNOT00000072622 2 1 1 60 8 42846957 42846977 GGATTAACAAAGCAGCCTGAG 60 42846917 42846937 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563217 ENSRNOG00000036713 ENSRNOT00000047477 1 1 1 80 1 198266636 198267038 GGACTGTAGAAACAGCACC 58 198266574 198266593 GCTTGTCTATGAAGAGCTGG 59 NA Rattus norvegicus 81 Man1b1 ENSRNOG00000012559 ENSRNOT00000016846 1 1 1 80 3 2548147 2548607 TCATGCTGGAGGAAATGGA 59 2548650 2548669 ACAGAGAATCAGAAAGCCCA 59 NA Rattus norvegicus 81 Gstm3 ENSRNOG00000019058 ENSRNOT00000025800 1 1 1 80 2 210765047 210765065 GGACACTTTGGAGAACCAG 58 210763796 210765004 TTCTGCTTCTCAAAGTCAGG 58 NA Rattus norvegicus 81 Ptpre ENSRNOG00000015717 ENSRNOT00000021359 1 1 1 80 1 207985001 207985021 CTAGATGTGTTTCAAGCTGTG 57 207985061 207986881 GCAGAATTCATATTGCTCCAG 58 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 1 1 1 60 2 223029562 223029581 GCTCCAGTACAACTTCTAGG 58 223029604 223044904 GGATGTCACATCTCATGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rbp1 ENSRNOG00000013794 ENSRNOT00000018622 1 1 1 93 8 106450041 106468965 CAAGTGCATGACCACAGTG 60 106469022 106469040 CTCAATCCACTGGGTCCAG 60 NA Rattus norvegicus 81 Pole3 ENSRNOG00000055277 ENSRNOT00000089792 3 1 1 84 5 78383844 78383863 TGTCAACATCTCCAAGGAGG 60 78383469 78383798 GTTATTGGCACAGGATGTGG 59 NA Rattus norvegicus 81 RGD1305420 ENSRNOG00000009492 ENSRNOT00000012602 2 1 1 81 5 61994415 61994435 CTGTAGCCACTTTACAAGTCC 59 61992858 61994372 GTCTGACTAGCACCTCCTG 59 NA Rattus norvegicus 81 Pxylp1 ENSRNOG00000012480 ENSRNOT00000017085 2 1 1 80 8 104740222 104740241 TACCCACTGTATGCCATTCC 60 104730466 104740179 AGGGTGATATGGCTTCCTG 59 NA Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 1 2 2 80 8 61810251 61811220 TGTCACATTGATACAGCCTG 58 61811263 61811281 CTTCACAGCTGTTGACCAG 59 NA Rattus norvegicus 81 Ido1 ENSRNOG00000031189 ENSRNOT00000051363 1 1 1 80 16 72224932 72225650 TCCTGCAATCAAAGCAATTCC 60 72225692 72225710 CTACACAGTGCCTTCTCCA 59 NA Rattus norvegicus 81 Semg1 ENSRNOG00000013776 ENSRNOT00000018420 1 1 1 80 3 160630129 160630387 TTGGACAGTATGGTGGGAC 59 160630067 160630085 AATTGAGGTGGCCTTTCTG 58 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000087753,ENSRNOT00000051290 1 3 3 80 8 127233208 127234472 AAGGACAGTGTTACAGTTCTG 58 127234666 127234684 CTCCTTCAGCTTGGAATCG 58 NA Rattus norvegicus 81 Fst ENSRNOG00000011631 ENSRNOT00000015680 3 1 1 80 2 46539919 46540996 TGAGGGAAAGTGTATCAAAGC 58 46539859 46539878 ACCTTGAAATCCCATAGGCA 59 NA Rattus norvegicus 81 Klkb1 ENSRNOG00000014118 ENSRNOT00000019237 3 1 1 80 16 50168512 50168530 AGGATCACCTATGAGGCAC 59 50168574 50169054 TGTCGTACAGTCAGAGCTC 59 NA Rattus norvegicus 81 Atp1b3 ENSRNOG00000011501 ENSRNOT00000015476 2 1 1 80 8 104199636 104199655 TACATACAGCATGTCTGACC 57 104196615 104199595 TCCACAGAATATGGCTTTAGG 58 NA Rattus norvegicus 81 B3gat1 ENSRNOG00000007142 ENSRNOT00000009825 2 1 1 80 8 27800474 27801085 AAACTGTACCAAGATCCTGGT 59 27801127 27801145 TCAGTGAAGCCCTTCTTCC 59 NA Rattus norvegicus 81 Stk19 ENSRNOG00000048929 ENSRNOT00000072446 3 1 1 180 20 4516992 4517010 GAGAGCGGATCCTCTAAGG 59 4510510 4516678 ATCTTGAAGCTCCTTCAGCT 59 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 3 2 2 82 3 161237438 161238010 GACCCTCATGATGTCTGGT 59 161238056 161238074 CATGGATGGTTCCTACCCA 59 NA Rattus norvegicus 81 Isl1 ENSRNOG00000012556 ENSRNOT00000017305 3 1 1 81 2 48497614 48497632 TTTGGACGAAAGCTGTACC 58 48494640 48497569 TTTGATCCCGTACAACCTG 58 NA Rattus norvegicus 81 Cdcp1 ENSRNOG00000004743 ENSRNOT00000006272 3 1 1 82 8 132271834 132271855 CCAAACACAAGATTTCCTTCCT 59 132270256 132271791 GTGGTCCAGACAGCTTAGG 60 NA Rattus norvegicus 81 Umodl ENSRNOG00000037191 ENSRNOT00000056143 1 1 1 80 5 152423033 152423089 ACTTCTTTACCAACCACAACC 59 152422973 152422992 TGTAGTGTCCCTTTCCTGAG 59 NA Rattus norvegicus 81 Umodl ENSRNOG00000037191 ENSRNOT00000056143 3 1 1 80 5 152423587 152423645 TGAACCTTTACCCATGACCA 59 152423526 152423546 GTGCTAAGTACAGTTGTCCTC 59 NA Rattus norvegicus 81 Zfp462 ENSRNOG00000032048 ENSRNOT00000047225 1 1 1 80 5 71756095 71756115 ACTCTGCTCTTTCAAATCCTC 58 71756157 71759416 TTGTAGGCATGTTCACCAG 58 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326,ENSRNOT00000089491 2 2 2 60 8 93494059 93494077 ATCCCTGGGTTTGTGACTG 60 93494100 93494119 ACCTCTGTCTCTTTAAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1330 ENSRNOG00000052448 ENSRNOT00000084315 2 1 1 60 8 43795488 43795506 CCCACTTGACATCCATCCT 59 43795446 43795465 GCAGGTCTGAGGTAAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1218 ENSRNOG00000047382 ENSRNOT00000072247 1 1 1 60 8 43908240 43908264 CTCTGTTTCTTATACCTTGATCCTC 59 43908204 43908223 CCTGCCCTTTGTAGAATGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf8 ENSRNOG00000048321 ENSRNOT00000072920 1 1 1 80 5 79670473 79670494 CTCAGAGGACCTCTTATGTACC 59 79668097 79670434 TTGAGATGTTTCGACACTTGG 59 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 3 2 2 81 3 161814954 161816898 AGTATGAGTACTGCATCTGGA 58 161814893 161814911 AAGTCGCTCTTGGTTAGCT 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 3 3 3 80 20 48570225 48572170 TCTCCAAATGGGAAATGGC 58 48572212 48572232 CAATCTGAATCTGTTCTGTGC 58 NA Rattus norvegicus 81 Ppp2cb ENSRNOG00000015182 ENSRNOT00000020663 1 1 1 80 16 62282344 62282367 CTATTCATGGGTGACTATGTAGAC 58 62281412 62282305 ATAGCGCACCTTTAATGCT 58 NA Rattus norvegicus 81 Casp6 ENSRNOG00000009508 ENSRNOT00000013049 2 1 1 80 2 230195251 230196653 TATTCATCATCCAGGCCTGTC 60 230196694 230196713 TGTCTGTCTGATGATCCACC 59 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 3 2 2 80 5 154919398 154919419 CATCAGTTAGACTTCAACGTCC 59 154918691 154919360 TTCTTGTAGCTGAATGACAACC 59 NA Rattus norvegicus 81 Wdfy4 ENSRNOG00000029662 ENSRNOT00000043811 2 1 1 80 16 9350431 9351202 GTGCTAAGACAGTTCCTAGAC 58 9350371 9350390 ATGCCCAGGAGATAAATGGA 59 NA Rattus norvegicus 81 LOC100911034 ENSRNOG00000019736 ENSRNOT00000026820 3 1 1 80 3 152201944 152202838 TCTATCAGGTTCGGCATCG 59 152201882 152201900 TTTCACATGGTGGATGCAC 59 NA Rattus norvegicus 81 Cyp1a2 ENSRNOG00000016173 ENSRNOT00000021653 3 1 1 81 8 62453433 62453451 CTCACTGAATGGCTTCCAC 59 62451913 62453388 CCACTGCTTCTCATCATGG 58 NA Rattus norvegicus 81 AC108572.1 ENSRNOG00000060412 ENSRNOT00000030174 2 1 1 81 20 2047154 2047176 TCAGGAGAAGAGCATAGATACAC 59 2047217 2047348 GTGAAGGCTCCCATCTCAG 60 NA Rattus norvegicus 81 Cer1 ENSRNOG00000010518 ENSRNOT00000014008 2 1 1 85 5 101005837 101005855 AGTACACTGGGAAACCTGC 60 101004119 101004137 GGTTGTTCTGGACAGTGAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC102550306 ENSRNOG00000047596 ENSRNOT00000071825 2 1 1 80 3 151548757 151548846 GGCTTTCAGGATGAATCAGG 59 151548696 151548714 GGACAGATGAAGGGTCCTG 60 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 1 3 3 80 5 59621207 59621225 ACATTACCTCCGTCAGCTC 59 59620030 59621166 TGGATAAGGTACTCCAAAGGAC 59 NA Rattus norvegicus 81 Plat ENSRNOG00000019018 ENSRNOT00000025763 2 1 1 80 16 74109282 74110088 TCACAATTACTGCAGAAACCC 59 74109222 74109241 AACTCCGTGGTATACTTCCC 59 NA Rattus norvegicus 81 AABR07049040.1 ENSRNOG00000032203 ENSRNOT00000040968 2 1 1 87 5 101429375 101429394 CCAACCTGATGAAGGTTGAC 59 101429276 101429325 TTAACCACGACACAACTCG 58 NA Rattus norvegicus 81 Kcnu1 ENSRNOG00000014741 ENSRNOT00000019935 1 1 1 80 16 70926909 70928199 CTCACTGAACTGAAGAATCCC 59 70926849 70926867 GCTTGTTCCTTTGATCGCT 59 NA Rattus norvegicus 81 Kcnu1 ENSRNOG00000014741 ENSRNOT00000019935 3 1 1 80 16 70939571 70939590 GATTCGGACATGCTAGACAG 58 70934947 70939529 AGATCGTTTCAGAACCACCT 59 NA Rattus norvegicus 81 Col15a1 ENSRNOG00000039197 ENSRNOT00000017217 1 1 1 80 5 64534182 64536615 GGATCCAGAAACTTGGTCAC 59 64536657 64536676 GAACGTCCCTTCTATGACCA 59 NA Rattus norvegicus 81 Champ1 ENSRNOG00000000112 ENSRNOT00000000124 3 1 1 113 16 80850260 80850278 TCTTCACTCCAGGACACCT 60 80843175 80843194 CAAGCTTATCGCTGGTTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lrit1 ENSRNOG00000012790 ENSRNOT00000017773 3 1 1 82 16 14309252 14309270 GGAGCTACTGGATACGTGG 59 14309315 14311752 CCTGAAGCCCTAAGACTAGC 60 NA Rattus norvegicus 81 Atp5e ENSRNOG00000049912 ENSRNOT00000071913 3 1 1 70 3 172564624 172565924 CTGGACTCAGCTACATCCG 60 172564572 172564590 GAACTCAGTCTTCAGGGCA 59 NA DesignRelaxed Rattus norvegicus 81 Ank1 ENSRNOG00000018241 ENSRNOT00000064070 2 1 1 80 16 73682848 73682868 CAGAATATTCCAGGAGAGCAG 58 73681866 73682808 TCGAATGATCTTCTTGGTGAC 58 NA Rattus norvegicus 81 Pramef17 ENSRNOG00000042820 ENSRNOT00000048366 3 1 1 80 5 162440780 162441559 AGTTACTCAGGTGTCTGGT 58 162440718 162440738 ATGACTCCAAATCTGACTGAG 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 2 3 3 80 5 100474453 100493417 TGAGCGAGATCAAGATATGTC 58 100474393 100474411 TCCTGTGGAGATGTAGAGC 58 NA Rattus norvegicus 81 Syf2 ENSRNOG00000060597 ENSRNOT00000091494 1 1 1 80 5 153269936 153272649 CATCTGAAGCGGAATGAAGC 60 153272691 153272710 GTTAGCAGGCAGCTTAAGTC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740,ENSRNOT00000073240,ENSRNOT00000026546 1 3 4 81 16 81679437 81679461 CCTTATCACTAAGAATGAAGAGGAG 59 81679499 81684924 CGGGCTATAGTAATCAGGCA 59 NA Rattus norvegicus 81 Clic4 ENSRNOG00000018109 ENSRNOT00000024464 2 1 1 80 5 153569095 153570025 CACATTGTCAAGGTGGTGG 59 153569033 153569052 TGTCAGGTATCTCCAGATGC 59 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000009930 2 1 2 85 3 148082844 148091380 CTCACTCCAGGTGATGCTC 60 148091426 148091447 TAGACATAGACGCTTTCCTTCC 60 NA Rattus norvegicus 81 RGD1307752 ENSRNOG00000020317 ENSRNOT00000027539 1 1 1 80 3 152942413 152942431 CGAGGAAGAGTATGGTGGT 59 152942472 152943272 ATCCAAATGACCATGAACAAGG 59 NA Rattus norvegicus 81 Ctsz ENSRNOG00000050697 ENSRNOT00000072069 2 1 1 80 3 172528787 172532545 CCAAGGACCAAGAATGTGAC 59 172528726 172528746 TATAATTCTGGATGGTGTGGC 58 NA Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 1 2 2 80 3 176915011 176925761 GAGACTCAAATGTGGACCTC 58 176914950 176914968 GATGAGCATAGAGCTCTGC 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 2 2 2 80 3 173896375 173896397 CAACTTCAGGATCAGAATCAGAG 59 173894895 173896336 CAGTCTCCTCCTTTGTTGGT 60 NA Rattus norvegicus 81 Ido2 ENSRNOG00000025365 ENSRNOT00000032116 2 1 1 81 16 72273405 72275217 CCACTGGAAATCGGTAACCT 60 72275259 72275279 AGACTGTCACCAGTATGAAGC 60 NA Rattus norvegicus 81 Phf21a ENSRNOG00000006063 ENSRNOT00000067664 3 1 1 80 3 81262695 81262714 GACCACATTCACTTTCCCTG 59 81262756 81268005 TCCTCATGGATATCACCGTC 59 NA Rattus norvegicus 81 Plcg1 ENSRNOG00000051490 ENSRNOT00000078909 2 1 1 80 3 156756609 156756630 AGAACAACTACAGTGAAGACCT 59 156756670 156756782 GGTCACCATTCTCCTTAGCA 60 NA Rattus norvegicus 81 Arhgef10 ENSRNOG00000012561 ENSRNOT00000073971 2 1 1 80 16 79763702 79765118 GATACCTGAACAAGCTCCTC 58 79763641 79763659 GGTCGTTGTAAACCGTCTC 59 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 2 1 1 81 16 83358452 83381203 CTATATGGGACACCGCAGG 60 83381248 83381266 GTAAGGATAATAGCGGCCG 58 NA DesignNoJunction Rattus norvegicus 81 Mcph1 ENSRNOG00000028586 ENSRNOT00000043384 3 1 1 80 16 75917574 75917592 TCATTGGTCCCTACAAGGG 59 75904165 75917533 GTTGGGTGATGGAATCTAAGAC 59 NA Rattus norvegicus 81 Bpifa5 ENSRNOG00000013908 ENSRNOT00000020713 2 1 1 81 3 149644505 149644960 CAGAGAAGCTTTCAGACAAGG 59 149645002 149645021 TTTCACATGGCTCAAGAGTG 59 NA Rattus norvegicus 81 Prr5l ENSRNOG00000004666 ENSRNOT00000006291 3 1 1 80 3 91304824 91310292 TTCTGCAGAGTGTTCACGA 59 91304762 91304780 GAGACACCACTTGCTTCAC 59 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000023736,ENSRNOT00000090674 1 2 2 80 16 81494866 81494884 TGTCTTTACCTCACAGCAC 57 81494926 81496132 GCAAGCTTCATACAGTTTGTC 58 NA Rattus norvegicus 81 AABR07052844.2 ENSRNOG00000059153 ENSRNOT00000066294 3 1 1 82 3 78493383 78493406 GATCTCTTAAGACTCAAAGTCAGG 59 78493323 78493343 AAAGAGGATGACAACCAGGA 59 NA Rattus norvegicus 81 Kcnb1 ENSRNOG00000046949 ENSRNOT00000074023 2 1 1 96 3 163935117 163935135 AGTTTGACAACACGTGCTG 59 163853543 163935057 ATGATGGCCAGGATCTTGG 60 NA Rattus norvegicus 81 AC135696.1 ENSRNOG00000058908 ENSRNOT00000081634 3 1 1 60 16 37500171 37500191 ATGCTTCTGTCAACTTCTCAG 58 37500212 37500231 GACATGGTCTTCCACCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC114391.2 ENSRNOG00000061751 ENSRNOT00000058039 1 1 1 60 16 75498851 75498870 AGATAAAGGCACTGCTCTCC 60 75498308 75498326 GGTTCCGATTCTGCAAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Zmiz1 ENSRNOG00000010488 ENSRNOT00000014004 1 1 1 80 16 1943692 1944083 GAATGCCATCCAACACTCC 59 1944126 1944145 TCTGACTTGATGGGTACTGG 59 NA Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 3 2 2 80 15 34239621 34239735 GCGTACTCTTCAGATTGAGTC 59 34239777 34239795 GAGAACAGGATCTGGGAGC 60 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669,ENSRNOT00000088578,ENSRNOT00000089705 1 3 3 80 3 3828464 3829618 CGCATCTATAAAGCAGCTGG 59 3828403 3828426 GTAATTCTGTCGATAGACTTGAGG 59 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 1 2 3 82 15 35032125 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032714 TCTCAGTGACGATGTCCAG 59 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 2 3 5 94 X 22286082 22288504 ATGACCTCCTTGTGGTCAC 59 22288561 22288580 CATATGCATTTCCACCAGGG 59 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 3 3 5 95 X 22286082 22288504 ATGACCTCCTTGTGGTCAC 59 22288562 22288581 GCATATGCATTTCCACCAGG 60 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 2 2 2 80 8 117282501 117282748 GATCCTAGGAGAGTGTCCA 57 117282934 117282953 CTCATCTGAACTCTGTCTCC 57 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 1 2 2 80 20 5548776 5548998 GCTTTGAGGTAACAACATCGT 59 5549037 5549058 GATTCTCAATCCATTTGTCCCT 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 2 3 3 82 2 216500164 216500182 TTACCAGACGAGGATGAGG 58 216494934 216500119 TTGTTCATTCTCTGTCGGTC 58 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000091513 2 1 3 109 16 2152015 2158119 CTTTACAAGAGCGCTTGCT 59 2142280 2142299 CACCACTTTGGTTAGATGCC 59 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 2 2 2 80 5 137259403 137259500 ATAAAGATTGCTCCAGGAGG 57 137259541 137259561 GTAGTAGAGGTACATGACGAC 57 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000045362 2 1 2 95 3 110556794 110556812 TGATCTCTTGTGCTGAGCA 59 110556699 110556722 GAATTCCAAAGCACGGGAG 59 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 3 2 2 80 8 132716702 132717713 CCATTTCAGGTCTGGTGTG 59 132716640 132716659 TGTCAAACCAGTAGTTCCCA 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000089371,ENSRNOT00000041367 3 3 6 81 1 76613064 76614117 CAAGTCAGGAACGAACTGG 59 76613001 76613019 GGTCACAGATTGGATCCAC 58 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086474 1 1 3 113 14 86158921 86158939 CTGGTCAAAGTGGGAGAGG 60 86157809 86158845 CTTGTGCTTCATCATCTCGG 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300 2 1 2 80 1 162030567 162034366 CCTATCAGTGGTACCTGGA 58 162034408 162034428 GTAAGTAGCGTTCAAATCCCA 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681 3 1 2 80 2 170276304 170276322 CTCTGCAGAAGATGGATGC 58 170272946 170276260 ATCCTGTTCCATGTAGCCT 58 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 3 3 3 80 2 184901905 184903595 CTACATACAGGACTCTGCTGG 60 184903637 184903655 GAAAGCCAAGAGAAGCCTG 59 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000083942 1 1 2 104 1 219144482 219173536 AAGACTTCACGAGCTGGAC 60 219173604 219173622 TTCTTGACCACTCCGAGAC 59 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728 2 1 2 84 13 26807850 26812098 CACGTAGTGGTCACAGGAG 60 26807784 26807804 CCAGAGTTATAAACGCTCCCT 60 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 1 2 2 60 1 222244426 222244448 GCCTAAGTATAAACAGCAGACAC 60 222244238 222244256 CCAGTATTCAGCATTCGGG 58 NA DesignNoJunction Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000002719 3 1 2 80 11 51054721 51057514 ATTTGAAGGGTGAAGATGCT 58 51054660 51054679 CGATGAGACTATGTCTTGCA 58 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268 3 1 2 80 4 64374955 64378310 ACAGACTCCAAGGGAAAGAC 59 64374894 64374912 TCGGCTTTCTAGGTAAGCA 58 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000087898 1 1 2 80 X 40287381 40287399 AATTTCCCTTCGCCATGTG 59 40287440 40294565 AATTATGCCATATACCAGCCTC 58 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000084023 3 1 2 108 2 196013832 196013850 TGAGGAGGAAGAACTGGAG 58 196013922 196019981 CAAAGTATTACCAGCGGGA 57 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 3 2 2 80 13 94101523 94101541 ATTGTGGACAAACAGCACG 59 94050508 94101481 GACACCGAGTTCTTTCATCTG 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 1 2 3 80 5 22747114 22749238 GGCTAAAGTTAAAGAACCCAC 57 22747054 22747072 CTTCCCTCTTCAGTCTTGC 58 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146 3 1 2 80 X 14905435 14908461 GTTCTAATTTGGCAGGAGCTG 60 14905375 14905396 ATATCACTCGAGTCTTCCTCTC 59 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 1 2 2 82 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347595 CTCCTTGTCCCTTCAATACAG 58 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 1 2 2 80 8 94913208 94916140 GAAGATGATGGACTGCTTGG 59 94913147 94913168 CTCTTCCATGTCCGTAATAGGT 60 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000090181 3 1 2 109 1 170395570 170395588 GACGCTAAAGTTGGTGGAG 59 170395090 170395497 CAAAGTCCCTGTTGCTTCC 59 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 3 2 2 89 17 39511105 39511882 AGATACATGTAGAGCTCTACCA 58 39512731 39512749 GAGCAGTCTTGTCTTTCCT 57 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743,ENSRNOT00000070972 3 2 2 81 3 130045375 130045396 CAGCTTATTTCATCAGGAGAGG 59 130045432 130048063 CTCTCAGGAAATATACGAAGTTCTG 59 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248 2 1 2 81 2 148765594 148774434 TTCAGATTTGTGTATCCGGGT 60 148774477 148774495 ATGCGGATGTCTGGATACC 59 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 1 2 2 80 10 18088984 18089287 CATTAAGAACGGTCAGTTTAGG 57 18088925 18088944 TGCCTTCATAGTTCATTGCT 58 NA Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 3 2 2 80 X 43628814 43628832 CTATGACCCATGGATTGGC 58 43628875 43628984 GATCCTATACCAAAGCCTCG 58 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060 2 1 2 103 16 18966589 18966607 TTGGGAGTTACATCCTGGC 59 18966240 18966523 AATCAAGTACCACACTCCGG 60 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 2 3 3 85 20 9791405 9817306 AGGAAGAAAGGATACAAGACCC 60 9817352 9817370 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 3 3 3 105 20 9749958 9776141 GGAAGAAAGGATACAAGACCC 58 9776208 9776226 ATGAGTGTGGACTTCCCAG 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000018843 2 1 2 81 18 31820109 31825305 ATGAAGACTCCAGCACACC 60 31820046 31820065 GTGAAGGAGAGTTCCGAGTC 60 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 1 2 2 80 1 100660248 100665446 ACTCTGGGCTCATTTATACCT 58 100660188 100660206 CCTCCGTGTAGATAGGCAG 59 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 1 3 3 80 X 37983847 38069150 AACCAATAAACGAGGAGAGC 58 37983786 37983805 TCAAGCTCATCGTCATTCTG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 1 2 10 80 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Grm4 ENSRNOG00000000487 ENSRNOT00000083426,ENSRNOT00000066115 2 2 2 80 20 6758376 6758584 TCAACTTCTCAGGCATTGC 59 6758314 6758332 ACTGGTAGATGTCGTAGCG 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000087818 3 1 2 80 1 164913372 164913554 CCAAAGAGAAGAGGGTTGC 59 164913595 164913616 GAATGAGGATATCATCCAGCAG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 2 3 3 80 12 8091945 8091966 ATTTGTGAAAGGCTCCATTGAG 60 8092006 8094725 ACGTTTGTGTCATTGTTCCC 59 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000079437 2 1 2 80 10 31005127 31006155 CAACAACAGAATATGCAACAGC 59 31006193 31006214 CATGTTTGATGGAGAACTGAGG 59 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000085613 1 1 2 117 6 27561412 27561430 GGGTTATAAGCCAAAGGCA 58 27560602 27561102 AGTAGCATATGTTGGTCTGTG 58 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000068322 1 1 2 94 1 83966783 83966802 ACTTTGCACTTGAGCACTG 59 83966861 83966879 TGAAATTCGTCCAGCACAC 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576 2 1 2 80 4 176597710 176597728 CTTAGAGGACTCTGCTGCC 60 176596510 176597671 GACCATGGGAAATCTTCTTTACTC 60 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000007726 1 1 2 90 19 25158094 25158112 TCAAGATGGTGACAGCCTG 60 25153748 25158041 CTTGGTTTGACTGCTCACTG 60 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 1 2 2 87 3 7194089 7194917 GTAACAAGGTGTTCTCCACC 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 1 1 2 80 11 60536074 60536095 AATAGCCACTCAGTAGTCATCC 60 60531122 60532593 GATGTCAGATGCTGTTATTAGAGG 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 3 3 3 81 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781873 CTCTTGAAGAACACGACTCC 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000019862 2 1 2 157 17 15358007 15358026 TTTAACAGGAACTGTGGGCA 60 15356585 15357893 CTGTAATTTCTTGTGTCTGAGTCTC 60 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678 2 1 2 110 1 89391704 89391722 CTGGATGGAAACAACGAGG 59 89388043 89388629 AAAGAGCCAATCTTCCAAGG 58 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939 1 1 2 80 17 43464316 43464334 TGACCCACAGAATCATCCC 59 43464378 43464509 AGCGAGCAATCCTCTTGAG 60 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470 2 1 4 99 6 8219159 8219179 CTGAAGGGATTACTTGTCCCA 60 8219238 8249807 GTAACGAATCTGCATGACCTG 60 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 3 2 2 80 9 53475060 53475080 TTTCAGTCCATGGTCAATTCC 59 53465071 53475019 CAGGAAACAGTCCTATTCCC 58 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000005109 2 1 2 81 10 11050636 11050657 CATTGTGACCAATTACTGGGAG 59 11051788 11052253 TAGAAGCTTGCCTTGGTCC 60 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 3 2 2 105 1 177569842 177569862 ATCATCTTATCAGACGAAGGC 58 177651613 177654175 GACTAGACACCTGCTTCCT 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072009 1 1 3 88 9 10353200 10359275 CTCTAACGCATTCAGTCCC 58 10353130 10353148 TTCTGGTGATGCAGAAGTG 58 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449 1 1 2 80 16 83017031 83019468 GACCCTGAACTCAACATGG 58 83016969 83016989 GAGTCTAGACTTGATTGGTCG 58 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000049873 3 1 2 81 13 89589431 89589449 ACGTTCTGCCTTCAAACAC 59 89589494 89589603 ACTGGAACCCTACATGGAC 59 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 3 2 2 80 12 12721689 12721709 AATTTAGGGCCAAGATTTGCC 60 12719994 12721650 CGAACATCGACTTCCTAATCTC 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604 3 1 2 81 3 44081227 44081245 AAGGGAGATATCGCCAGGA 60 44068094 44081185 AGTCCAAATGAGAGTCTTTCCT 59 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 2 2 2 80 4 61524049 61526444 ACCCTGAAACAAGCAAGGA 60 61526486 61526506 GGAGTTCTTTGAACCATGGAC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000074303 2 1 6 80 1 282700302 282700519 AGCACAAATGATGCTTCCT 58 282700563 282700581 AGGGTCTGGGAATCATCAG 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000015564 1 1 3 80 2 231063292 231078911 GGGTAAAGGAGTCAACTGAG 58 231114663 231114684 CTTTGATGATCTCTTGCTTTCG 58 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473 3 1 2 80 1 87961048 87961069 GTCTGATTATTGATGCTTTCGG 58 87960749 87961007 AGATGAAGCACTTGGTCTC 57 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079 3 1 3 81 18 29487826 29487845 ATCACCTCAGCTAACCAGAC 59 29487889 29492125 TAGATGATCCTGGTGCCTC 58 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 1 1 2 80 10 15242604 15251705 AGATGCAGGTTCTCAAGAC 57 15251748 15251767 ATTCAGCTTCCTTCTTCCTG 58 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000051640 2 1 2 88 1 100858669 100858768 TCATGTTTAGCTACAGGAAGCA 60 100858817 100858835 CTCCTGTAACCGGAATGGG 60 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 3 3 3 90 12 7504845 7504863 CTTCCCTGTGTCTTGTCGA 59 7504917 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997 2 1 3 81 X 62491679 62491699 CTTCATTTCTCCCGAAATGGG 59 62452712 62491639 ACAGGGACTTGTCAGAATACTC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000083651 3 1 5 90 16 19728844 19728863 CTAGACTTCTCCTTTGAGCG 58 19728915 19730706 TATGCAAATCGTTCCTGCTC 59 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 3 1 1 69 X 48792452 48792470 CTTCTACCGACCTGTTGCT 59 48802125 48802143 ATAAAGGACCAGGCTGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 3 2 2 80 3 5561823 5562850 TGTGGATGATCATGAACGC 58 5562894 5562912 CTGTGTTTGCAAACTCCAC 58 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742 2 1 4 82 19 757165 757535 CACAAGAACCTCCGAATCC 58 757581 757599 TTGGTACACTAGCTGGTCC 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654 1 1 2 83 1 189614754 189614772 CATCCCGAACCATCAATGC 59 189614819 189615880 GTTGGCTTTCAGAGTCCTG 59 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 3 2 2 80 10 29034801 29034822 CAGAGAAACAGAAGCAATTCAG 58 29034857 29035380 GGTACTTGGTAGTTATAGAGTTCTC 58 NA Rattus norvegicus 81 Apbb3 ENSRNOG00000017849 ENSRNOT00000063841,ENSRNOT00000024313 2 2 2 80 18 29502893 29503076 GGAGCTAAGTGCTTTGCAG 59 29502831 29502850 AATACTGCTCTTCCCTGGTG 60 NA Rattus norvegicus 81 Kndc1 ENSRNOG00000027240 ENSRNOT00000034426 1 1 1 80 1 212275845 212275863 CATCCAGCAGCTTGAAGAC 59 212275906 212277474 TTGGCGATGTTTCTTCTCAG 59 NA Rattus norvegicus 81 Rn60_X_0595.1 ENSRNOG00000051223 ENSRNOT00000076011 2 1 1 60 X 58824220 58824241 ACATCTCTTCTGAGAACTTCAG 58 58824073 58824093 CTAAGGGATGTGACGATAAGC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0595.1 ENSRNOG00000051223 ENSRNOT00000076011 3 1 1 60 X 58824220 58824243 CTACATCTCTTCTGAGAACTTCAG 59 58824075 58824093 AAGGGATGTGACGATAAGC 57 NA DesignNoJunction Rattus norvegicus 81 Stx1b ENSRNOG00000019193 ENSRNOT00000026063 2 1 1 80 1 199258754 199262058 CCAAGTTGAAAGCGATCGAG 60 199258693 199258711 TCTTACGGATACGCAGGTC 59 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659 2 1 2 80 6 28747492 28750023 GATGGCGAAGATTTCCAGTC 59 28747431 28747451 GGATTCTACACCTGTAATGGC 59 NA Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197 3 1 2 129 5 16975567 16975587 CTTCTCTTACCTCTCCTGGAG 59 16973156 16975476 TTCGGCTCTCCTGTTTGAG 60 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000012725 1 1 2 80 8 111714346 111715025 TGAGAAAGATCCAGTGGCC 59 111714284 111714302 CCAAAGAACGGTTGAGTCG 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 1 1 1 60 2 111061155 111061178 CTGTAGTAATGACATACTGGACGA 60 111059907 111059926 GGAACTGGTTGATTTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 1 2 4 91 20 2058450 2058655 CTATAACCAGAGCGATAAAGTCTC 59 2058705 2058723 TATAGTGCGCTTGGAGGAG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 3 3 9 103 20 2087659 2087970 GTTCTGAGCACTTGAAAGC 57 2087574 2087592 ATGGTAATCAGGTTGGCTG 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000077991 1 1 9 99 20 2078869 2079730 TCTACATAGTGGTGCTATAGTGTG 60 2078793 2078814 TGACTTTCTCAGGAATGAAGCT 60 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000082489 3 1 2 94 3 7745140 7752844 CCTTTGGCAACTGTGAGTG 59 7745064 7745082 AGTGTTGTGTTTGCAGCTG 60 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 1 1 2 80 13 90521512 90521531 CGGTACTCGATCTTATGCAG 58 90522276 90527718 AAGGTCCAGTGTACATCTCC 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 1 2 4 80 15 34752193 34752211 CATGTGACCTTCTGTGGTG 59 34752254 34753085 AGTGATTTCCCTTCCATGAC 58 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678 3 1 2 81 4 115181589 115181609 CTGGTGTTGAACATCAGTGAG 59 115180552 115181546 TGTCTGAATCTCCCTGCTG 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000027933 3 1 4 80 1 82331120 82338618 AGCTGGACGTAATACATCTGG 60 82329991 82330013 TGAAGTTCAGGACAGAGTATGAG 60 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 1 2 2 94 10 49004714 49005084 CAAGTCTCAGGTGGAGGAC 59 49004638 49004656 ATTCCTCCAGGTCAAAGCC 60 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 2 2 2 96 10 49004714 49005084 CAAGTCTCAGGTGGAGGAC 59 49004636 49004655 GAATTCCTCCAGGTCAAAGC 59 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700 1 1 2 113 11 53202355 53215939 AAAGCCAGCAAAGGAAGTG 59 53222584 53222602 ATAAGCAGGCTCTGTGGTG 60 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000087178 1 1 3 153 17 47309282 47309301 CCTGATGCTGTACTCATGAG 58 47318350 47320753 ACCTCTGTGTCTTCTCCTC 58 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000087178 3 1 3 155 17 47309282 47309301 CCTGATGCTGTACTCATGAG 58 47318350 47320755 TAACCTCTGTGTCTTCTCCTC 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 2 3 4 80 3 62902463 62902965 AATCGACTATGAGACCCTGTG 59 62902403 62902422 TGTCTCCAGTTGTGGTAGAG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 3 3 4 80 3 62902463 62902964 ATCGACTATGAGACCCTGTG 59 62902402 62902422 ATGTCTCCAGTTGTGGTAGAG 59 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658 1 1 2 89 9 64572909 64572927 AGGATGTTGTCAATTGCCC 58 64571019 64572856 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 2 3 3 80 1 32118935 32118956 TCATCAATAATGTGGAGGTGGA 59 32118456 32118894 TGCTGTCCATCTCTTCCTC 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661 3 1 5 120 12 52400301 52400527 AAGAAGTTCGACAAGGTGGT 60 52400610 52400628 ATCAAAGTTGGGCCAAACC 59 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000066430 3 1 2 84 10 15629974 15629994 ATAAACCACGTAGCAGATACG 58 15630040 15637125 ATAGCATCCGAGAACCTGG 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 1 4 5 82 13 47422067 47422659 CAAGCCAACTCACAACTTCC 60 47422004 47422022 TGTTCGAACTGGACAGAGG 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 2 4 5 82 13 47422067 47422658 AAGCCAACTCACAACTTCC 58 47422003 47422021 GTGTTCGAACTGGACAGAG 58 NA Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 1 2 2 80 2 197752731 197754355 GGAGAAGCAGGATACACAG 57 197754397 197754417 CTTGGATATTTGGCCTTTAGC 57 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 3 2 3 80 1 101691076 101691095 AGGAGGAATTGAAGCCTCAG 60 101691134 101692361 AGTACTTCTCATCCTTCTGTTCC 60 NA Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 1 2 2 83 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039663 195039682 CCTACTATGGACACCTTGCA 59 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000041165 3 1 2 83 20 14584861 14584879 GTGATCACCAGACCCTCTG 60 14584923 14586554 GTAATCCAAGCATTCCTTCAGG 60 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 2 2 2 148 4 120412404 120412423 ATTGAGGAGGTGAAGAGCAC 60 120412534 120415006 ATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 2 2 2 91 5 157764180 157764198 GTCCAACTATGCCTCCTGG 60 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000015948 2 1 2 80 1 142401819 142401837 GACTCGTTCCACTTGAGAC 58 142401309 142401777 GGTGTTGGTATCTTCTGTCAG 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448 1 2 4 80 7 64672733 64672752 CTACACTAAATCTGCCAGCC 59 64672794 64707687 TTGAATTCCTCTGGGATGCT 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083763 3 1 2 81 14 108456914 108461402 TTAGGAAATGGAAGGCCCT 58 108461445 108461465 GCAGCTCCTTAATTTCTTGTG 58 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 3 2 2 94 2 189583037 189583058 AGAGAATCAAACTGCAAGTCTG 59 189584344 189584579 TAGGATAATGCCCATGGCTC 60 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112 1 1 2 81 2 189581790 189581810 AGACTTGTCTCATCATTCGCT 60 189581850 189583016 CGGATCTTGAAATCAATTCCGA 59 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 3 2 2 80 14 6674564 6675266 TCTGATGAACAGTATCCCGA 58 6674503 6674521 CTTGATAGCCTCATCGGAC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 1 2 2 60 1 84894778 84894797 CTCCAGTTCTCAACACATGG 59 84893926 84893944 GAAGTCAACAGCCACATCC 59 NA DesignNoJunction Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000088720 2 1 2 80 6 72418165 72418185 TAGTGACTGCAGAAGATGGTG 60 72399416 72418123 ACGTTATTGGTTCAGCCCA 60 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937 3 1 2 99 6 27476734 27476752 GGCTCACATCCATTATGGA 57 27475090 27475113 CAGTCCTAGATCTGAGTTTGG 58 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 2 2 3 80 9 10687252 10687271 TCCTAAGGCACAAGATGACG 60 10683947 10687209 CTTCCTGTGTAATCCGGCT 60 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 2 2 2 80 15 46116197 46116217 CGATCACTCTGTCATCATGTG 59 46116258 46121903 TGGACTTTGTCATTGTGTCC 59 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000071615 1 1 3 81 10 42618567 42618585 ATCTTGACAACCACCGAGG 60 42618632 42618652 ATTCACAGTCACCCACCAG 60 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000058663 3 1 2 96 15 51304077 51315382 GGCGAAGGTATATGGTTGGA 60 51315441 51315459 GCTTGCAATCAGTGACACC 60 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237 1 1 2 80 15 51303973 51303993 TTCTCTATCCATGCTGCCC 59 51304036 51304056 GGCAGTACAAGGACTAATAGC 58 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 3 2 2 80 1 220784824 220784844 GCAGACAACAAAGAAAGAACG 59 220784683 220784783 CTGAAGAGATCCTCTGCCTC 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000044390 2 1 2 80 1 214040416 214041124 CACAACAGGTACATACAGACG 59 214040356 214040375 CTCAAAGAAGTGTTCCGCAG 60 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775,ENSRNOT00000080218 3 2 2 80 7 75411782 75411802 ACCACCATTTAGTACGATGAG 58 75411644 75411741 GTTGATGTGTTAGCAACACG 58 NA Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 2 2 2 90 2 189995075 189995094 ATACAAGATCTGCCAGTCGG 60 189995556 189995574 ATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000079707 3 1 2 87 13 48689966 48690251 CGCTTCCTAGCAGAAATAGGA 60 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 2 1 1 60 13 99101086 99101104 GGTGAAGAAACCTCATCGT 58 99099789 99099807 ATAGCGTCTGATTTCTCGG 57 NA DesignNoJunction Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 1 2 2 80 17 54375303 54380669 TAGTACAAGCTGGTTTGGG 57 54380713 54380731 GATGCCATTTCAATCGCTG 58 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 1 2 3 91 4 150520267 150520285 TTACGTAGGAGCTGTGGTG 59 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 1 1 2 108 2 235311999 235312017 GCCAGTACAAGTGTAGCGA 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 3 2 2 87 20 19352583 19357846 TGACTATGTTAGAGATCACTATGGG 60 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 3 2 2 86 14 104274952 104274971 CTTACTTTCCAAAGCCCTGC 60 104275015 104277348 GGTTGTTGAACCTTCTATAAGGTC 60 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757 1 1 2 118 8 97277618 97277636 GAAAGTGACTCGAGCTCTC 58 97278178 97291660 TAATGATGCTGCAGTCGAC 58 NA Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 3 1 1 114 1 11965244 11965262 GGCGGACTTCTTATTTGGG 59 11968501 11968520 TAACCAGACAAATCGCTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004921 2 1 2 100 X 104775214 104775233 AAACACCTTCCTTGGAGAGG 60 104765628 104775152 CCACTACTGATCCCTTTCCA 59 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000017859 3 1 2 97 9 60921442 60921462 ACTATTGCAAGACTACGAGGT 59 60921515 60922004 GATTTATTAACCTCCCTCTGAAACC 60 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000064331 3 1 2 81 17 55269463 55270581 CTAATCTGCTCTGGGAACCT 59 55269401 55269424 GATACAAAGGACAGGTGTTTATGG 60 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130 3 1 2 80 5 101563339 101563357 GCCAACATGAGAAAGAAGC 57 101561051 101563297 CTTCATCTTTAGTCTGCTGCT 58 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 1 3 4 81 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820458 37820476 CAGCATTGATGGCTTCCTG 59 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 1 2 2 80 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477449 91477467 TTTCTTTGCTCAGCTCCAC 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787 3 1 2 83 4 118225279 118225297 TTTGTTGGTGACCTCAGTC 58 118225341 118228416 CAGAGACACTGAAATTCTTCCA 58 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000012308 3 1 2 80 8 69085982 69086927 GTAAGATCTTGGGTTGGCG 59 69086968 69086989 CAAAGATAAGAATCCCTGTGGA 58 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817 3 1 2 81 10 39690534 39690552 ATCTTTCCGAGACAGGACG 59 39690595 39692201 AGACAACAGACTGGATCACTC 60 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000030760 1 1 2 80 10 39690677 39690695 CACTTGTGCGGATGTACAC 59 39690738 39692208 TGGCAGTAGACAACAGACTG 60 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 1 2 3 80 X 65279579 65279599 GAAGTTTGGTTCTTTGGTCTG 58 65279639 65280649 TGCAGTCACCTTCTTATTGAG 58 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891 3 1 2 170 19 37204573 37204593 CAAACCGAAATATGCACAACC 59 37206280 37215173 CCACTGAATCTCAAAGATCATCC 59 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 2 3 3 80 17 59714734 59714753 TCAGAAGCTTGATGTGACAC 58 59714796 59723846 GATTCTCGCAACTCATCCC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 1 3 8 80 13 68709932 68710069 TACACTGCTCAGTTGAAAGC 59 68710112 68710130 TACTCGGTCCATCTTCAGC 59 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000003255 2 1 2 82 11 66801381 66801399 AGAAGGAGGAACTCATCGG 59 66797948 66801336 CATCACCCTCAATTTCTGGG 59 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000003512 3 1 2 99 X 82723524 82723542 GATGCTACCATTCGCTCCT 60 82705882 82723463 GGTAAACACAATCTGTGGCTC 60 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545 1 1 2 80 12 17581804 17583032 GATGATGTCCCTCAGGTCC 59 17581742 17581760 GAAGGAGTATCGGTCACGG 60 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 1 2 3 80 18 56456244 56456904 TCTCACTTGGTCTGAACCC 59 56456945 56456966 CCATTTGGTATCCATCCTTCAC 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 3 2 3 80 18 56451402 56451538 GCAATTTGGTAAGACTCTCGG 59 56451580 56451598 GCATCTTCTTTGCCCAGAC 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000088197 2 1 2 85 14 76793194 76799192 AAGACTTCAGTAAGAACACGTC 59 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 3 2 2 81 7 97042784 97047404 AGTACCACTCAGGTCAACTC 59 97042722 97042742 AACAAGTGTTAGTGCAGACAG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000074146 1 1 7 80 17 57074601 57079369 ATGAAACTGATGAGGAGACTG 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 3 1 1 68 16 2048047 2048065 TCTTAACAGCGTCTTCCAG 57 2036440 2036459 GGTGAAGCGTTCCTATACAC 59 NA DesignNoJunction Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145 3 1 2 80 15 36934592 36937353 GATCAAGAGGATTCTACTGGGA 59 36937392 36937412 GATAAGGAGTCTGAGGAGGTC 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227 1 1 2 80 18 57145284 57145302 AGCCAGTTAGATGTGAGGT 58 57143375 57145240 GTTACTTTCTCCAGCTGGG 58 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 2 2 2 80 4 84027093 84052318 ATTCCATCAGGTAATCGTCC 57 84027032 84027053 CGATTGATCATATCGAAAGACC 57 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905 2 1 11 103 6 99150486 99150504 GATCTGATGTCCTTGCAGG 58 99151226 99151875 TCCTCTCCAAACTTTGCTG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000058735 1 1 11 102 6 99150487 99150505 ATCTGATGTCCTTGCAGGG 60 99151226 99151872 TCTCCAAACTGCTTTGCTG 59 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000012095 3 1 3 192 13 52628705 52631322 AGTCCAGAGGAAATCTAAGATCAC 60 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 2 2 2 80 3 3357077 3357096 TACATGATCACCATCACCAG 57 3357137 3357281 AGTTACCTTCATAGCACAGAG 57 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 1 3 3 80 20 20588827 20588935 GGATCTTCAGAGCTCTGGG 59 20588976 20588997 GGAAAGTGTTCTTGTAGTCCTG 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 2 2 5 80 1 79685410 79685431 ATTCTACACCCTACGAACTCTG 59 79684586 79685369 GAAAGGGAGGTGTTCACCT 59 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 3 1 1 87 10 11913368 11913386 CAGAAGACCCTCAGCAGAG 60 11916809 11916828 ACTTCTGACTGGTCTCAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 2 1 1 60 5 77605854 77605872 AGAACTGCAACAATCCAGC 59 77605084 77605102 GAGACTGGGACTTGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 3 2 2 80 6 10992996 10994442 CGCAGACTCTGGTTCTAGG 60 10994484 10994504 GTCGTTATGGTTAGCTCTGAC 59 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000089551 3 1 4 87 2 78250746 78251288 TGAAAGCAGTACTGTTTGCT 58 78251337 78251356 AGAATGGACTTGACTTTGCT 58 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000071751 2 1 2 96 15 8746186 8746208 TTTGCAAAGGGAAGTGATTGG 60 8746266 8746284 TGGCATGCTCTCAGATGAG 60 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000088242 3 1 2 80 3 92935434 92935454 TGAAATTGAGACTGACAAGGC 59 92931455 92935395 CCTTCTTCAACCACTATCTTGG 59 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 1 2 2 80 1 187828913 187830722 GATTTCACTACCATCAAGTCAC 57 187828854 187828873 TGGCAATAATTCCAACTGCT 58 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 2 3 3 80 20 27213401 27213420 GTGCAGTTTGCTTCAAAGGA 60 27213460 27214015 GATCTCAATATACCTGTGCCCT 60 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 2 3 4 108 5 78369878 78369896 GAGAGTTTGCCATGTTGTG 57 78368993 78369806 ATGATAATGTCAGCACCGG 58 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252 2 1 2 93 10 83104146 83104169 CTTGTCAAGAGAAGTTAAGGC 57 83104073 83104091 CAAGTATCCAGCTCGTAGC 58 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 2 2 2 80 1 199682748 199682768 ATAATCCTGCTGACATTCTGG 58 199682809 199683355 TGGTTCTGAACATAGACCAC 57 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170 1 1 2 80 8 47692674 47695438 CTCCCTGAAAGGCTATCCC 59 47695482 47695500 GTCTGCTTGCCAGATTTCC 59 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000042781 2 1 2 81 19 28292507 28292525 ACATTGAAGCAGGAGAGCA 59 28292331 28292462 TAGAAAGATGCTGCCCGTC 60 NA Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000082688 2 1 2 94 15 87776860 87777265 CAGCAGAAGAGGTAAAGACC 58 87778445 87778463 TAATCAGTCCACCGAGGTC 59 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910 3 1 3 188 10 75089421 75094177 GCCTTTCAATGTCACAGGG 59 75094326 75095251 TATGTGATGATCTGGACCATGG 60 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000081951,ENSRNOT00000066474 3 2 3 81 10 75090428 75090446 TTCTCCTTCCTCACTGGAC 58 75090491 75091367 CATTGGGTGGGATCTTGAG 58 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528 2 1 3 80 3 8635548 8635569 GAATTTCATCTGAATGAGAGCG 58 8635610 8645853 GAGCTTCCTCTCCTTTCCA 59 NA Rattus norvegicus 81 Dph1 ENSRNOG00000003116 ENSRNOT00000086378,ENSRNOT00000004161 3 2 2 100 10 62023378 62025293 AAGCTGTTGTGTATCTTGGAG 58 62022810 62022829 GACTTTGCTATATGGGTCGT 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123 2 1 3 122 4 99799985 99800006 AGAAATGGTTCCTCAGATTTGG 59 99798444 99799405 GCTGAGAGGATCTCTGGTG 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646 2 1 4 80 12 19763042 19778839 TCAGTTTACGGATTACGCCA 60 19762981 19763002 TAGGGTTTCTGTTGATCTCCTC 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 81 1 257590070 257592413 TCTCTACATCTTTCAGAAGGGTG 60 257592449 257592472 GTCAGGTCTGTAACATGTATATGC 60 NA Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 1 1 1 60 19 44234639 44234659 GCTATTTGAGGAAGCTACTCC 58 44237104 44237122 AAAGTCAGGGCTCTCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000010421 2 1 2 98 5 39618414 39618432 TTCAGTTCTCAACCCACAG 57 39617742 39618353 GAGTATGTTGATCCTCTGGG 57 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000091493 2 1 2 109 3 123622765 123624297 GTCCTCACTGTGTTCTATCC 58 123622675 123622693 TCTACTTGGCACAAGAGGA 58 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 1 2 2 80 7 24660068 24668117 GGTGATCATGAATCAGGCA 58 24653189 24660025 TCTTTCATTGACCCTTCTGG 58 NA InUTR Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 2 2 2 80 11 14254243 14265433 CTCCTGGATGAAGAAACTGC 59 14254182 14254202 TGATTCACTCAAGATGTCTGG 58 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 1 2 2 80 13 91732553 91735119 GAACGTGATGCAAGAGTGG 59 91732491 91732509 CGGCATCTGATGTCAAAGG 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 1 2 2 80 1 88558195 88558296 ACCAGCGAATTCATGTAAGAG 59 88558135 88558155 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 2 2 2 81 1 88558195 88558296 ACCAGCGAATTCATGTAAGAG 59 88558134 88558155 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 3 2 2 105 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879521 142879539 ATCATGTTCATCCACGCCA 60 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 2 2 2 80 13 48648526 48648544 CAGGATCTGGATAGCAAGC 58 48648587 48649273 GGACAGATCACTCTTGTTGG 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041 1 1 2 80 1 265918034 265923321 CCACATTCTTCTATGATGAAGAGC 60 265923358 265923378 CTGTCCCACTGTTTAAGACCT 60 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 3 2 2 124 19 52181093 52184940 CTGAAGTTTGCTGAATCCGA 59 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505 3 1 3 94 13 76962568 76963297 AGTGAGTAGCACCAATGGG 59 76963353 76963373 ACATGAGGTTGACATTAGCCA 60 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 1 2 2 80 10 65451254 65451348 GAAGGATCTGAGTACTCCTGC 60 65451387 65451408 TACTCAGCCTTAATCTCTTGGG 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252 3 1 3 102 12 52356873 52358700 TGACAAAGGTTCTGGGAGAG 59 52358765 52358783 GAAAGACTCAGTGCTGAGC 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000059162 1 1 3 80 18 60001431 60002480 CAGACATGGTTCTAGCAGAG 58 60001370 60001388 ATGGTTTCTCCTTGGTTCC 57 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116 3 1 2 123 1 48318481 48327832 CGAGAATATGCAGAGGCCA 60 48318376 48318394 GAGAGCAAAGTCAGCTCCA 60 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000056436 3 1 3 164 2 195876059 195887689 CCATGAAGAGATTATTAAGGTGGAC 60 195870857 195870875 TCTGCTTCTCGCTGATACC 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 3 2 3 80 2 195883206 195883226 CTCCGGGAGGATATAAGTAGC 59 195880868 195883168 TTCTAGTACCACCTGTATCTCCT 60 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000044127 1 1 3 80 7 99175097 99175115 TCCACGAGACTTCATCGAC 59 99175159 99175594 TGGTTCGACTTCTCCTCTC 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 2 3 3 90 7 99155552 99171405 GGAATATGGTGTGATCTTTGC 57 99171456 99171475 CTTTCCCATCCCAAAGTCTC 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490 3 1 2 80 4 116505542 116505561 TAGAAGCAGAAGTACGGCAG 60 116459633 116505501 TGGCAAACTGTTCACATTCTC 60 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 2 2 2 80 18 61699069 61699092 GACTTCCGTAATAAACCCTATCCT 60 61697278 61699032 GCCATTATTGATCATGACCGT 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899 2 1 2 81 1 99449124 99449145 CCATCAAGGAACTAAAGAAAGC 58 99449369 99452203 TCCTCTTTGAACGAGTGAC 57 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 1 2 4 99 14 85876551 85876569 TGAAAGTTCTCAGCTGTCG 58 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000013122 1 1 2 80 7 143400344 143400365 AGTGAATTTAAGGAGGTTTCGG 59 143400282 143400303 GGACTGCCTATCAGCTCTC 59 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000013122 3 1 2 81 7 143400350 143400371 AGTGCAAGTGAATTTAAGGAGG 59 143400287 143400308 GCCTATCAGCTCTCATGGT 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000075846,ENSRNOT00000002030 3 2 3 80 12 25513751 25513770 GGATACCTGGAGATCAGCTC 59 25513255 25513709 AGGAAGTGGTCTAATGACGG 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000084066 2 1 2 81 10 13557348 13557367 GATTCAGCTCTTGCAAATGG 58 13556555 13557306 AGAAAGTGAGACACTCTTCTG 57 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 3 3 3 80 5 169281698 169285300 GAAAGATAGCAAGATGGACGT 58 169285342 169285360 CTCTCCGCTTTCTTCACAG 58 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015 1 1 3 80 1 148928188 149079750 GTCCTAGGATTCTCCATTGC 58 148928127 148928145 GGCTTCATTGAATGTGTCG 57 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 2 2 3 80 7 143493424 143493809 TGAAGAAGGATGTGGATGGAG 60 143493364 143493384 AGTTGATTTCATCAGTCAGGC 59 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 2 1 2 80 4 84659364 84660323 CCAGCACGTGATTGATGAC 59 84660366 84660385 GGTTTGTATTCGTCTGGAGG 58 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 3 2 2 81 10 71434088 71434106 CTCCTACCTCATGGAACCT 58 71431451 71434044 TCTAGTGAAACACTGCAAGC 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000077167 2 1 4 86 12 5685404 5685429 CACATGGACGATGTACTGC 59 5685327 5685347 AACATTCTCTTCCCTCCAGTC 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000077167 3 1 4 88 12 5685404 5685429 CACATGGACGATGTACTGC 59 5685325 5685344 AGAACATTCTCTTCCCTCCA 58 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 2 2 2 80 15 12876869 12876889 ATAGATGTTGCAGAGAAGGCT 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 3 3 3 81 16 20112541 20112559 TTCTTCTGCAAGGAGGTGG 60 20112602 20112707 CAAAGTCTAACGTGATGGGTC 59 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000084317 2 1 2 81 1 48677745 48680131 TTGAGTATCAAGCAGCTTGTG 59 48680172 48680192 GCATGAACTGGTAATACTGCT 59 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 3 2 2 81 5 173288635 173289542 GTGCTTCTTCAGAGTTCTGC 59 173289680 173289699 CAGACTCAGACACCACAGAG 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000017885 3 1 2 95 1 193131921 193132726 CTTTGATAAGAATGGCAATCCC 58 193132782 193132800 GAACTGAGAGGTTGTGCTG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076993 2 1 5 81 X 71311945 71311963 TTTAGGCTGCCTTCTTGCT 60 71311577 71311900 CTTCTGTACCCTCTCAGGC 59 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000004384 3 1 3 103 10 3339126 3342506 CTTCTACGTCGGTATGAGCA 59 3356720 3356738 AAGGCCAGTACATCAGACC 59 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000088169 2 1 2 89 5 74106256 74107830 AATGTCAGTAACCATTCCACCT 60 74106188 74106206 GTCATCTCCACTGGCTGAG 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000079122,ENSRNOT00000051558 2 2 3 97 8 68132728 68154061 TCTCTTTCATGGAGCTTGCT 60 68113820 68113838 AACAATGCACTGCAGAAGC 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000051558,ENSRNOT00000010991 2 2 3 80 8 68281901 68281920 AAGATTCCAAATAGTGGCGC 59 68275711 68281858 TATCACATCCAGCACGTCC 60 NA Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 2 2 2 80 2 165581814 165584191 GGACTGCATTAGTTACAGTTGG 59 165581755 165581778 GAGCTAAAGTTGATCTAAGCATCC 60 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 2 2 2 139 4 151513686 151513704 AGCACATGTCCTACATCGG 60 151508268 151513583 CTCTCGGCTACCTATCTGC 59 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000050372 1 1 2 80 6 67083659 67084037 TGTTAAGTGAAGAAGACGGC 58 67083598 67083619 CTCCCTTCCCAATTATAGATCC 58 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 2 2 2 81 14 13056813 13056834 TTTGGTATGGGAAAGAACTGAC 59 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Igsf9 ENSRNOG00000008054 ENSRNOT00000010930,ENSRNOT00000086508 3 2 2 81 13 90820852 90822274 CTTACAGCTGGACAAGTTCC 59 90820790 90820808 CAAGGCATCCTCATTTCCC 59 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000016891 3 1 3 80 2 243709609 243717315 GCTCAGACCTTGAAAGCAG 59 243717359 243717377 TTCATCAACCTTTGCTCCG 59 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147 3 1 2 84 8 71900178 71914858 TCACTTTGATCTCAAGCCAG 58 71914905 71914923 CAAGCCAAAGTCAATCAGC 58 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 3 3 3 82 11 81635522 81635540 TCGACAAGTACAAAGCGGA 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000091052 2 1 2 81 10 46155483 46155501 TGACCAACCAGAACCTGTC 60 46154817 46155440 GTCAGCAAACTCTTCATCCAC 60 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 3 2 2 80 7 143464075 143466097 CAAACCAAGTACCAAGAGCT 58 143464014 143464033 CTCTGAGATCTCCATCTTGC 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000079000 1 1 3 81 15 12578032 12578052 CATACCTGTCATCCTGTTGTG 59 12578095 12578670 TGACTTCGTCCTTCCTGAG 59 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000010675 1 1 3 137 15 12570127 12578673 ACTGACGACGAAGTCATCC 60 12578773 12579449 GTACTGGCTGTATCCTTCCT 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270 2 1 2 105 7 97900334 97937639 AAGAAGCTATGGCAGTGGT 59 97900247 97900265 ATTCCTGTCGTCTGTACGC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 2 7 9 95 4 14186525 14186543 AACATACTGGTCAAGCCAG 58 14187108 14188059 GGTCCCAGTCTCATTTAGC 58 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 1 2 2 64 15 19727785 19727803 CAGAGACTGGTGTCGTCAG 60 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000076958,ENSRNOT00000071067 1 2 3 80 12 24606994 24612392 TACATTCAGTATGTGCAACGG 59 24606934 24606952 GTGCTCATCTGCTTCTGAC 59 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 2 2 2 80 19 38601996 38602015 CTTCAAACTGGAGCAAGGAG 59 38602058 38607146 CTGGTCTTCCAGTCTGGAC 59 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 2 3 3 80 X 70333250 70333269 GTCATCTCTTCCAGAGAAGC 58 70333311 70333991 CCAGTTCCAAATACTTTGGC 57 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000078020 1 1 2 82 3 3399611 3402032 GGAAGTTAGTACCCGTCCG 60 3399547 3399566 CATCAAGTCCTCCAACAACG 59 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000084640 3 1 2 132 5 117590850 117592020 AAACAAAGTTTCTCCAGAGCC 59 117592113 117592132 TGCTTCCGTATAATGATGGC 58 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000003801 1 1 2 84 10 43885483 43892083 CTTCTCTACAGACTTCTGGGA 58 43885419 43885437 ACACTTGAGACCACTGGAG 59 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000086502 1 1 2 80 15 14622495 14622513 AGACTCCTCATCCTCAGCA 60 14622429 14622453 ATATACACGACAGTAGCCAGG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 1 2 2 60 12 2581174 2581192 AAAGGAACACTCTGAGCTC 57 2581300 2581318 GTGGGCCCTAAAGAATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Grb10 ENSRNOG00000004290 ENSRNOT00000085175 1 1 2 174 14 92045815 92057227 TTTCCCTCCAGGCTTTCAG 60 92042442 92045679 TTTGACATCCTTTCTGAGCCT 60 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 1 2 2 80 9 81846862 81847938 CCTTCTCGACTCAAGTACCA 59 81846801 81846819 CTTGCACTTGTACCCACAC 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000027574 3 1 2 87 1 267143237 267143256 CTTTCGGTTCTTTGAGGCAC 60 267098852 267122323 GGATAACCACACTGATTTCCTC 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 2 2 2 80 5 173352911 173352929 GTGAACCAAAGAGACAGCC 59 173352973 173353075 GAATAGACAGACCTGGCCA 59 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364 2 1 2 86 2 189337103 189337123 CCCTTTATGCACATTCTGACC 59 189336618 189337055 ATATGGTAGCTGGCCATCC 59 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 2 1 3 67 10 13289722 13289740 CTGTCTGTCTGCTCTGGAG 60 13306127 13306146 AATCTGGCACTTAGAAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 1 2 2 80 16 21069203 21069222 GCATTGATGAGGTGAATGGT 59 21069264 21069695 ATCCTTCTGTGTCCTTCTCG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 1 4 6 114 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000091772 1 1 3 83 10 13321048 13321154 GCTTCAAATGGGAAAGAGAC 57 13320984 13321003 CATCATCACCATCATCACCA 58 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974 2 1 2 80 13 100302918 100308144 ATCTCCAGACCCAAATCCA 58 100302856 100302874 CAGCCTGTCATAGTCAAGC 58 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000016341 3 1 2 82 3 11321262 11325955 CAGTCAGCAGAGAATGTGC 59 11325999 11326019 ACGACACCAAGAAACATAGTG 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 1 4 4 80 5 152682826 152682845 CCAGTGGATTGTGTAGAGTG 58 152682885 152683368 AGCTCTTTCACCTGAATATCAG 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 1 2 4 100 5 152685886 152685904 AGAGGAGAAACTGACCCAC 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373 1 1 2 82 6 111283582 111283600 CTCCCTCCAGGATAAGCTG 59 111283005 111283537 GGAAGATCAGAACTGCAGTG 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256 1 1 2 85 9 82724733 82724933 GGATCTTCAGCAGACTTCAG 58 82724981 82724999 AGGTTTCAGTGGTACTCCC 59 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484 3 1 2 110 3 94636359 94636377 CTTCGCTATCAGCTAGGCA 59 94634596 94636285 CAAAGTCCAGGGAGTTTGG 58 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203 1 1 2 80 11 81714557 81714578 CCTTCAATGCACAGAATAATGG 58 81712552 81714516 TGCAGAAGCCATATTGCAC 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000080083 3 1 2 80 10 46993374 46993392 TAGTAGCTAATCCAGGGCC 58 46992858 46992939 CATCAGTTTGCATGTGGGT 59 NA Rattus norvegicus 81 Ctif ENSRNOG00000018342 ENSRNOT00000088662,ENSRNOT00000024716 1 2 2 80 18 71525019 71698549 TGCTCCAGAAGGACTTCAC 59 71524957 71524975 ACAGGAAGGTGATGAAGCC 60 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000003741 3 1 7 81 X 70636781 70636802 CAGGGATGATTGAGTCTAATCG 59 70639520 70641185 GATGTCACTCCCTTCAGGT 59 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 1 2 2 80 1 220473114 220473277 CATTCAGCAAAGGTTCTCCC 59 220473319 220473338 GCCAACACCTCCATTAACAC 60 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000066928 3 1 4 87 15 1038527 1043618 CAAACAGAACAATCGAAGATGC 59 1047615 1047636 TATCCGTCTCATCTGTAAACCA 59 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 3 3 3 80 10 47108739 47108757 CCTGGCTACATCCATACCA 59 47108799 47110669 TGTGTTCTTGTCTAGAGCTCC 60 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000090375 1 1 3 83 1 215270226 215273061 CCAGAAAGACTATGCCAAAGG 59 215266469 215266487 TCTTCAAAGGTGGATGCGT 60 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967 2 1 3 93 13 48071365 48071383 CCACAGATCCGAAAGACTG 58 48068529 48071311 CTTCAATATCCTGTGCAATGAC 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 1 2 2 80 3 114034241 114034261 TTCCCAAGTCATCCTCTACTG 59 114032991 114034204 GGGCTAAGTTTGTAATAGTCAAGG 60 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000064951 1 1 4 80 12 786067 786746 GCATTGTATCAATCTGAGTTGG 58 786782 786805 CATACCTAATTTCTCTTCTGGGTC 59 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453 2 1 3 107 1 80616814 80616833 CTTGTTAGGAGGCTTCTCCT 59 80614841 80616744 GTTGTGATTGGCCAGTCAC 60 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 3 3 3 105 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613717 80614133 CCTCCATCAGTACCGTCAG 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 3 2 2 80 7 123278327 123278350 GTTTAAAGAACTTGTCTACCCTCC 60 123278388 123280273 GCAGAACCTTCATTGTCTGC 60 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 2 2 2 80 4 99515430 99515723 TATTCCTGGCAAAGCCCTC 60 99515368 99515388 GGACAATTGGCCTTTATACCC 59 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332 1 1 2 80 12 13138667 13138910 TATGCACATTGGAACCCGT 60 13133192 13133214 ATCATACTCTATGTCTCTGCCTC 59 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 1 2 2 80 14 18703193 18703213 TTTAGTGGGAGATAACCCAGC 60 18702204 18703151 TCACTGCAGATGCCTACAG 60 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000087857 1 1 3 118 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52675786 52675807 TCTCATCCACTCTGGTTTCTG 60 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000014023 2 1 2 82 4 7707629 7707651 CTCCAGAATATCAAGGAATGCAG 59 7707688 7722193 CTGTTAACTCTGTATCTCCATGTC 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 3 4 4 80 7 142048708 142050535 GATTCCAGACGATGGTGCT 60 142048646 142048665 GAAGAGTTGCTGTAAGCAGG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000064613 2 1 5 80 8 73073909 73073930 GAACGTTTGTTGACTACCAGAC 60 73065635 73073871 GGAATCCAATCATTTCCTGAGC 60 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000087458 2 1 3 97 9 65706111 65706129 CTTCAACTGGAGCAGAAGC 59 65702281 65706050 GAAACCAGAGCTGAGACTG 58 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 2 2 3 81 9 65704155 65704175 AACTCAACATTCACCTTCACC 59 65702277 65704112 ATGGGAAACCAGAGCTAGG 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 2 2 3 81 9 65704155 65704175 AACTCAACATTCACCTTCACC 59 65702277 65704112 ATGGGAAACCAGAGCTAGG 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 3 2 3 81 9 65704202 65706049 AGTCTCAGTTGCAACTTCGA 60 65704140 65704158 TAAGATCCTGCAGGTGGTG 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000023090 1 1 2 80 1 188096854 188101167 GTACATCCAGTTGGAACCAC 59 188096204 188096222 TGTTGACAAGTCCATCCAC 58 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 3 4 5 81 9 43834354 43834373 AAGTATCCAGCCAGGAAAGG 60 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000084742 2 1 5 123 9 43830673 43834251 CAAGACAACAGGGTGTCAC 59 43834337 43834356 CTTCCTTAAGCTCAGCTCCA 60 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000084238 3 1 3 80 2 154559800 154559821 TGTACAGTCTGAAATCTTTCCC 58 154559860 154561751 ATGATAATAGCCCTGTGTCGA 59 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 2 1 1 113 15 27968305 27968324 AGCAAGAGTCTGGTGAAGAG 60 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 1 2 3 80 9 10467473 10470828 TTAAGAAGGCCATTGAAGAGG 58 10467413 10467433 TCTTAGGCATCTTCTTGTTGC 59 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 2 2 2 80 2 104053537 104057808 AAGGAACCTAAGCTTGCCA 59 104053475 104053494 ATCCAGATCATGAGTGGCAG 60 NA Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 2 2 2 80 7 11306846 11307048 GACCTTATCTTACAGATCAACGG 59 11307086 11307106 CTCTGACTTCTCAATGAGCCT 60 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 2 1 1 63 17 66240105 66240126 GAAAGTGAAATCACTGATGAGG 58 66240322 66240340 CTGCAGTCTTCTTTGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000040559 1 1 3 83 1 3879193 3890876 CGACTTCCGCAAAGATGTC 59 3872207 3872228 TGCTGAAGGAATTGTCTTTCAC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 80 19 43234683 43234701 AAGTGATTGAGCAGATGGG 58 43234742 43237115 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 1 1 2 68 15 28018056 28018074 AACAAAGCCGTCATCTCCA 60 28034121 28034139 TGGGTCCTCTGTATGTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 2 1 2 80 15 28023026 28023044 CTAGACTGGTCCCAGTCAG 59 28034122 28034140 TTGGGTCCTCTGTATGTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368 1 1 3 80 3 11230398 11230416 CAGAACAAGGGCTACTCAC 58 11230460 11231034 AGACCTTTCATTCCTGACG 57 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029 3 1 3 80 4 38241364 38250882 GAAACACTACGCCAAACAC 58 38250924 38250944 ATCCTGTTCATCTGTATGACG 58 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546 1 1 2 120 3 171884884 171884902 GACATTTGTGGTTACGCGG 60 171878801 171884800 GTCAGCAGGGTCTACTGAC 60 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 3 2 2 82 6 122955500 122964945 TCTACGAGGAAATGAACAACAG 59 122964986 122965006 GGCTTCCACATGAGTATTGTC 59 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000086542 2 1 2 80 14 19416029 19416048 CTGATACTTCCAAAGCACCA 58 19416089 19418443 TGTCCATGTTGACAATACCTG 58 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005 2 1 3 120 19 53496532 53496550 GGTAACTGTGTCCCTCCTC 59 53496030 53496448 TGAAGAGTCCATCCACCAC 59 NA Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 2 2 2 82 2 243147601 243148260 AAGAAGAAAGAGGAGATGGAGG 59 243148303 243148321 GCTTAACAGGGACACAAGG 59 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948 1 1 2 80 4 21893845 21893865 CAGTGGCTTCGAAGTAAATGG 60 21893906 21897304 GTCTGTTGAAGCAGGAAACG 60 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000078947 1 1 2 80 7 124184222 124184242 AACTGGATTCTAACTGGTCCT 59 124182691 124184180 GGTGGAAGAAGGAAGAAGC 58 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000085647 2 1 3 80 3 117435007 117435551 ATGTCAGAGGAGGTCTTGG 58 117435595 117435613 TTGCAGAAGTTGACAACCC 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000085291 1 1 2 90 5 163020036 163026155 GCTTTGGACAAACAGAGGT 58 163019964 163019982 AACCACAATGTGCAACCTG 59 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554 3 1 2 80 17 77605227 77607626 CCTTCTGGAGAGGTACAGC 59 77607669 77607688 TGCTAGTTCAAGTTCCAGCA 60 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000034772 3 1 2 80 X 68340595 68343782 AAAGAACCTATCTACCACAGTC 57 68340031 68340051 CTTCCTAACAAACTTGAACCC 57 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529 2 1 2 81 1 104576835 104696212 TTCGATACCCAGATCTACACG 59 104696255 104696273 GCTGGAGGTCCTTGATGAG 60 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633 1 1 2 80 11 71005259 71104342 GAGCATTGTGAAGCTCCAG 59 71104386 71104404 TTGGTATCAGGACTGGCAG 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025291 1 1 10 81 9 95257457 95257475 TGTCATGCCTAACATGGTC 58 95257518 95298739 GACATAGGCTTCAAATTCCTG 57 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 1 4 10 80 9 95222318 95298732 CACTTTCCAAGGAATTTGAAGC 59 95298772 95298791 AGACCATGGATCCCAAAGAG 59 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000050764 3 1 2 81 2 127754555 127754573 TGTCATTATGGCGAACCTG 58 127723187 127754510 TCTGATCAATCTGCTTCCG 57 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 3 3 3 80 X 128446881 128446899 GCAGATCTTGTGAGTGCTC 59 128446940 128452172 TTCAGTACTGATGTCTTTCTGC 59 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 3 2 2 101 3 3657614 3657633 CAAGTGTCTCAAGTGCAGTG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000071324 1 1 3 99 12 20951191 20955435 CAATGGAACAGGCAAGAGG 59 20944755 20944773 AGCCAGAAATGTCACAGCT 60 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000089966 2 1 5 115 1 15839161 15844911 AGTGTCAGCTTACCCACAG 59 15844988 15845008 TCTGTTCTGACTTAGAGCAGG 59 NA Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 1 2 2 102 10 15325080 15325098 AGTATGCATGTGGAGAAGC 58 15324436 15325017 CCACAAAGTTCACACTATTCTC 57 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 2 2 4 108 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779539 226779557 GAGCCACTTAGCATCACCT 60 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000054812 3 1 4 87 1 226783343 226783397 CTTGGACAGTCTGGAAGGG 60 226779504 226779522 TCTGGACCTCCACTAGACC 60 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000082967 2 1 2 193 X 71541180 71543881 AGAACCAACGAAACGTATGC 59 71544037 71544834 AGTGAGCAGATCTGTCCAG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000081282 3 1 2 84 1 91029645 91030651 GCTAAGTGAGTCAGGGAGC 60 91030699 91030717 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000022292 2 1 7 80 2 186154321 186154339 TTCCACTCCTAAGTCCACC 58 186146184 186154278 TGAGCAGAAATCTTCAGTCC 58 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231 1 1 2 81 19 55931979 55937690 TGGGTCAAGACCTCTTCAG 59 55937735 55937753 TACACCAGCTGTTCACTCC 59 NA Rattus norvegicus 81 Stx4 ENSRNOG00000019302 ENSRNOT00000082121,ENSRNOT00000026224 1 2 2 80 1 199288237 199288334 GAGTTCTTCCAGAAGGTGC 58 199288378 199288396 CTGCTGTTTCTCCAACTCC 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 2 2 2 80 3 54517106 54519233 ATACCCTCCAATGAAAGTGC 58 54517045 54517065 ATTTCTTTATCCTCTACGCCG 58 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 3 2 3 95 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956101 37957284 AGAGAAAGCAAGACCCAGG 59 NA Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 2 2 2 80 18 69764575 69764691 GATAACATGGCTCTACTGAAAGAC 59 69764518 69764537 CAGATCGTCATAGAGCTGGG 60 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000040759 1 1 4 83 16 6189095 6189348 TGTCAGACCCTACACAACC 59 6189030 6189048 GTGACAGACTTCACAGCTG 59 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 2 1 1 72 4 10797274 10797292 TGATATGCCAAAGTCACCC 58 10802845 10802864 TCGAGGTAGATACTGAAGGT 57 NA DesignNoJunction Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000084860 2 1 2 80 2 244304782 244330131 CTATGATAGCCATGAGGGCA 59 244304721 244304739 CACAGCGACCTTAAATGGT 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060253 3 1 10 80 15 32828474 32852780 GACCGTTCTACCTGATGTC 57 32852822 32852842 CAGAGGGTGATGTTATCAGAC 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048353,ENSRNOT00000012129 2 2 5 114 3 2263967 2263990 GATGTATAGTGTTGATGGAGTGTC 59 2264996 2266783 GAAGTTCGAGATGGCTTGC 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000077092,ENSRNOT00000001098,ENSRNOT00000090039 3 4 6 80 20 3429878 3429897 GTACTGGACATCTTAAGCCG 58 3428148 3429836 CTTGTTGTGATTCACCTGGG 59 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000080844 3 1 3 190 18 65388686 65388762 ATCAGAGTCTCCTCGGAGG 60 65389375 65456680 AGCGTAGACTGAAGATGGC 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692 3 1 4 80 1 102814621 102818055 AAGGACATCCCAGTTTCTGG 60 102814560 102814578 CAATGTTGGTGAAGGCCTC 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235 1 1 2 82 1 215216071 215217282 TGGATAAAGCCTCAGTCCG 59 215226037 215226055 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391 1 1 2 85 13 48446462 48446578 ATGGAGAATATGCGGTGGA 59 48446627 48446645 GCTGAGGGTGTATGAAACC 58 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 2 2 2 80 1 164301988 164302532 ATGACCTGCAGAAACATCTG 58 164301927 164301945 CAGACATGCGCGATAAGTC 59 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004 1 1 2 89 20 30839341 30840320 TACCTCCCATCCTACAATTGC 60 30839272 30839290 CATGGAGTAGTCGATCCCG 60 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000078675 1 1 2 101 10 51693138 51694150 CCCAGTTATTCATCCAAAGATGAC 60 51693060 51693079 ACTGTTGGACTCGACTTAGG 59 NA Rattus norvegicus 81 Klf6 ENSRNOG00000016885 ENSRNOT00000023033 3 1 2 80 17 67945005 67945025 AAAGCTTGGGATATTTCCCAG 58 67935482 67944963 GGGAGGATGAAAGTTTCCC 58 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 2 2 2 94 3 119676287 119676305 AATGAGGTCAAGTCAGTGG 57 119676111 119676230 TCTTCATCAACTTCCCAGAC 57 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 1 3 3 80 6 129622935 129627834 GTGAAAGCAAGAATCTTCCAC 58 129627875 129627894 CTCCTAGTCTGTAGGATCCA 57 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000047831 2 1 2 80 1 171921074 171932132 AAAGCAGAGGAGTTACTGC 58 171932176 171932194 CTCATACTGGTTCCGTTCG 58 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000067650 1 1 3 80 14 33117636 33117657 ATATTTCTTCCTTGGACAAGGC 59 33117698 33123803 GTTACTGCAACCCAACCAG 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 2 2 2 80 2 243842533 243842551 AAACTTGGCAAGCAAACCT 59 243842591 243845251 ACTGGATATGGTTGTATAGAGCC 60 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 3 1 1 109 15 31642255 31642273 AATCAGAAATGCAGTGCCT 58 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000088776 1 1 2 80 3 161417859 161417877 TGCAAAGTTGAACTCAGCC 59 161418170 161418189 GTGTACACCCACATTTGCG 60 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000088679 1 1 5 83 9 81657359 81657377 TCATGAGCATCGCTTTCCT 60 81657422 81657690 CCCAGAGCAGTTTGAATTCAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000080419 3 3 12 101 20 3358183 3358201 TTCTTTGCCCATCAACACC 59 3360457 3360681 CACCTTCAGGAATTCTCTGTC 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080419 3 1 12 81 20 3363582 3364248 GGAAGCAGAGGATAGGTCG 59 3364293 3364311 AGCAACTGTATGCGTAGGT 59 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 3 1 1 70 20 14618776 14618796 GCTTTATGAGGACAACCAGAC 59 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720 2 1 2 80 19 43356367 43356385 GTTGTGGTACAGAATGCCC 59 43356429 43356826 CAGAGCCAAGTTTCCTTGG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000002793 3 1 3 82 14 25945008 25953581 GACCTTGGAGGATTTGAGAC 58 25953625 25953644 CCTTCATCTCTTGAAGGCTG 58 NA Rattus norvegicus 81 Dtx2 ENSRNOG00000001432 ENSRNOT00000001950,ENSRNOT00000085911 2 2 2 102 12 23690474 23692114 GGGAACAAGGATGGGAGTC 60 23690390 23690408 TGTGGAACCTGAACACCTC 60 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773 1 1 2 114 3 2452787 2453038 AGAAATGCAGCCCTACCTG 60 2452691 2452712 GTTGGTCAGTATTCTTCAGCTG 59 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305 2 1 2 80 10 11093803 11093821 AAGAGGCATGTGACCTACC 59 11097887 11098072 CATAATGTCATCAACGAAAGGC 59 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 3 2 3 90 12 22750797 22751048 CCATGAAGAAAGATGGACTGG 59 22750727 22750745 ACAGCCAGTCCAATGAGTC 60 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000090668 3 1 3 80 13 85378360 85378381 TGATCATTCCTAGAGGTGCAG 59 85377158 85377179 TCAGGATGTCCTGTATATGCTG 60 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000021258 1 1 2 80 9 112008508 112023482 AGACGAAGACAGAGAACAGAC 60 112008448 112008466 CTGCTGCTCTCATTGACCT 60 NA Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 3 2 2 80 1 260896733 260896752 GCTGAACGGTATCAAATCCA 58 260896273 260896693 TGGTTGTTACTCAGGTCTATCC 59 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000085877 2 1 2 89 20 31473433 31473451 GAGAAGCAGGCCTAGATGG 60 31468407 31473380 CTGGAGTACCAGGCAATCC 60 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 3 2 2 80 4 55813976 55816070 CATGAGAGCCAATAACCCA 57 55816114 55816132 CTCCACATCCCTTTCTTCG 58 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 3 3 3 80 10 109712171 109712192 TTTGTTTGAGAAGTGGAAGCTC 60 109712233 109713151 CAGACCAGCTCAGTAGGTG 60 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 3 2 2 81 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044950 78044969 GCTCGATGAAGAAGTTGTCC 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 1 2 3 80 18 72571603 72593008 CCATACCAAGCACTTGCTC 59 72593052 72593070 TGTAAAGGCCTGTTGTGTC 58 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192 2 1 2 80 9 96960211 96960230 AAGCATGGAAACTAAACCGT 58 96960272 96970468 TTTCTTCTTGCTCTTCGGTG 59 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000007371 2 1 2 88 6 33177019 33177377 TCTGGGCTCAAGATGAAGTC 60 33178431 33178449 GTACACGTACTTCCGGAGG 60 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576 2 1 2 81 11 87058898 87063141 CACCATGAGCAGTTGTTCC 59 87063183 87063204 CGTAGAAGGTCATCTTCATCAG 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000012397 2 1 2 121 4 152243753 152243772 GAATCTGAAGCACAAGGAGC 59 152214561 152243669 TCAACAGCTCTTCCACCTG 60 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 1 3 3 116 19 9774376 9777316 GGAACATGACATTGAGACGC 60 9774071 9774298 CACAGCTTGTGATTGAGACC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017413 3 2 3 90 19 9770406 9770424 CTCTGGTGGTCTTCCTCAG 59 9768970 9770219 CAAGTGTGCAATGTAGCCC 60 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199 3 1 2 118 1 100231452 100233897 GGACATACATGGTGTTCCGA 60 100231275 100231371 CTCCTTAGTCAGTTGGCCC 60 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000089587 3 1 2 104 1 91696563 91699931 CAGTCTTAAGTATTTGGCTCAGTG 60 91699994 91700012 TTTACCCTTTCCTCCAGCC 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000090170 3 1 2 84 13 49880312 49881077 AATCCAGAAGGATCCCAGTG 59 49882771 49882789 TAAGTCCAAGATGGCTGCT 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000088089 1 1 3 87 6 126110299 126110318 CGTGACTCTGTGTACTACAC 58 126113999 126116796 GCATCTTCATATTGTACCACAC 58 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 1 2 3 80 6 126103290 126103308 CCTACAGACCTGTTCTCCA 58 126103349 126105892 GTAGAACATATAGAGTGCACCA 58 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350 1 1 2 80 3 148422368 148422388 CACTTCAAAGAATGTGTCCAC 58 148421244 148422326 TATACCTGCAAAGCAGTGC 58 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000003438 2 1 2 89 17 90701130 90701385 GGACTTCAGGGAAGGATCTC 59 90701437 90701455 ATGTCCCAGGTCATGTTCC 59 NA Rattus norvegicus 81 Galnt11 ENSRNOG00000008117 ENSRNOT00000011814,ENSRNOT00000078077 2 2 2 80 4 6306807 6306830 CAATGATCTTGGACAGTATGACAG 60 6306280 6306770 CACATCCAGATCCGAAATGAG 59 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 2 2 2 80 2 198007325 198007494 CTACAAGCTCCTTAAGAAGGC 59 198007536 198007554 ATCTGTCGGATGGAGATGG 59 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000066101 3 1 2 91 3 116950079 116950097 TCTTGCATTGCATCACGAG 59 116950152 116950522 TCTTCGGTTAACAGCAGCA 60 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302 2 1 2 126 7 144087723 144087741 CAAACAGATCTGCGTGGTC 59 144088687 144091518 AATGGTATAGGCCTGACCAC 59 NA Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 1 2 2 80 2 197953207 197956559 GCTTAACCCTCCAGTTGAC 58 197953145 197953164 CTCCGAAGTTTCTTCTGCTC 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 2 2 2 94 10 86987322 86987787 TTTGGAAGCAATCAGTCCCT 60 86987247 86987265 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000087305 2 1 2 81 13 109442306 109442327 GAGGAAGATGACTATGAAGCAG 59 109418227 109442264 TCGACTCTCCTTGTACACC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087957 3 1 4 80 1 64008284 64008307 CTATCGCTGTTACTATTACAGCTC 59 64008343 64008490 TTGTATATTCCTGTCACCACCA 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799 1 1 4 80 1 63759676 63842600 TGCTCTGTCTTGGACTGAC 59 63842822 63842840 GCTGTGCTCTGAGGATAGG 60 NA Rattus norvegicus 81 Tnnt1 ENSRNOG00000028041 ENSRNOT00000058843,ENSRNOT00000034957 2 2 2 80 1 72891171 72891612 AACAGGCAGAAGATGAGGA 58 72894941 72894959 TCAAAGGAGGAACCACAGG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289 1 1 5 80 1 259409890 259410536 AGCCCATGGAGATTCAGAG 59 259409828 259409849 CGTCTCCGGATAAATTCTTCTG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021114 1 1 5 80 1 259446807 259448459 GCTGAACAGAGACACTCCT 59 259446745 259446764 GAGTTCTGCTGGATTTCAGG 59 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 3 2 2 80 14 86394417 86394437 GACCATCAGATTTGTCTGCAC 60 86394130 86394377 GATATCCAAGTGTACACGCAG 59 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994 3 1 2 183 3 120076236 120086992 CAAGGAAGCAATGAAGGCA 59 120032294 120076089 ACTGTCACTGCTGTCTGAG 59 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866 2 1 2 80 19 41712691 41712711 ATTACCAGTCAGAAGCTGAGG 60 41712752 41724181 TTATCTGCACCACACCTCTC 60 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 2 2 2 80 11 69018517 69019950 TAGAGTCTGAAGAAGATGTCTCC 59 69018459 69018481 TAGAGAAGTAGGGCTTTACATGG 60 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000067060 1 1 2 129 11 69193380 69223106 TTACCTGGGAAGACCATGG 59 69193269 69193287 GAGGCAGAATGAAAGCAGG 59 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000079407 3 1 2 97 5 165416398 165416418 ATTATTGCCACAACTACCTGG 58 165416477 165416940 TTAGAGGCTCTGCTCTGAG 58 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412 3 1 2 92 7 34649183 34649202 CTATGAGGACGTGAGAACAG 58 34649258 34649278 AAGATGTGCAATGCTCTCC 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 3 2 3 134 4 51930810 51936045 CTTTGGTTCCGGTAACTCC 58 51917541 51930715 CAACTGAGCAATAATCAGTTCC 58 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234 2 1 2 94 7 126134122 126134140 AGACCTGCTTCAACATCCA 59 126134198 126153853 CTTCTCTTGGCGAAAGGTG 59 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000005317,ENSRNOT00000081141 1 2 3 80 6 28518407 28518429 GCTACTGTGAGAAGAGATTTGTG 60 28518468 28521613 CTCTGACTTGGACCTTTGTG 59 NA Rattus norvegicus 81 Fer1l6 ENSRNOG00000025300 ENSRNOT00000038973 1 1 2 80 7 98511809 98511830 CAGTTTCTGTGTAAATCGAGAG 57 98511871 98513608 ATCTGAAATGGCTGGTCTG 58 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695 3 1 2 81 3 140023732 140023750 AACTGAAACGGGAGATGGT 59 140023795 140045047 TGTCTCACCATGCTGTAGG 59 NA Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504 2 1 2 68 7 144066338 144066356 AAGCATCATAAGCACGGGA 60 144067944 144067962 GTCAGAGTCACTGCTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000077579 2 2 3 102 10 88413605 88418146 GATCCCTGCAAGGAAAGAG 58 88413521 88413539 TAGTCAAAGTCCAGCATGC 58 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 3 2 3 86 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638481 TACAATCATTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 3 2 2 80 12 25208987 25209006 GGCTACCAGTCATATCTGTG 58 25209048 25210547 TCAGCTTCTGCAACATACTG 58 NA Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 3 1 1 65 1 81751480 81751498 GTTAACCAGCAGGAGTTCG 59 81751788 81751806 GACTTTCAGCTTCCCAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000017291 3 1 2 93 18 3216669 3216687 TATGAATCCTGCTTGGCAG 58 3216741 3219873 GTTTATCACCGTGTATGTTAGG 57 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045 2 1 2 80 7 11502009 11502027 ACAGATGTAGACCCAGCTG 59 11501766 11501965 CATGTTGGTACCTGGTGTG 59 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 3 2 2 81 7 11502075 11502188 CAATGCAGGTCTCTTCAACC 59 11502013 11502032 TGGGTCTACATCTGTCTGTG 59 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 3 2 2 80 3 113321839 113321857 TCTCTATGGAGAAAGGCGG 59 113321901 113323458 GGATCAGCTTCTCCACCTC 60 NA Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 3 2 2 83 20 31169983 31170001 TCAAGACTTCCCAGAGCAG 59 31170047 31200020 ACCGGAACATCCACTATCTC 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950 1 1 2 80 6 134984036 134984055 CCATTGTCAAGGATGTGCTG 60 134984098 134984274 TCCACACTTCCCGTATCTG 59 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 2 1 2 80 5 59066640 59066659 TCTTGAAATACACAGCCCAG 58 59066699 59067317 GATCTAGAAGGGACAGATTCTG 58 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 1 2 2 80 4 57038557 57039561 CTATGTGCTATGCCAAGCC 59 57039605 57039623 GGCCGATTCTTGATCTCAC 58 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 3 3 4 85 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563095 115563113 GTACTGAATGGCTCAGGCA 60 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 3 2 3 80 20 35287336 35287354 AACAAGCTGGACAAACCAG 59 35279204 35287292 TGACACATGATGTTGACCC 58 NA Rattus norvegicus 81 Tmem170a ENSRNOG00000049019 ENSRNOT00000074824,ENSRNOT00000082182 3 2 2 109 19 44094850 44094869 TCTTCACCCTCAGACATCAC 59 44092017 44094778 AGCAATTGCTGCACTTGTC 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000070819 1 1 3 85 9 95105337 95105355 TAGTGACCCATAGGTTCCC 58 95103978 95105288 GACTCCACCAACTTTCAGC 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143 3 2 4 85 1 81796497 81796515 AAGACCCTTCCTGTCTCAG 58 81796564 81796901 TTCATGAAAGGCCTGTCTG 58 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799,ENSRNOT00000084320,ENSRNOT00000079549 3 3 3 91 13 113840135 113840156 CTCTAGAAGGCAGTTCTCAGAG 60 113833736 113840084 TAGACCACTGTTTGAGCGAG 60 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 1 2 2 80 1 257650219 257650754 ATGACAGTGATTGGAATCCTC 58 257650796 257650814 CAACAACTGGCTTTGTCTG 58 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 3 2 2 66 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503728 157503747 ATGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 1 2 2 80 11 80771231 80772108 TGCTAAAGGATAACGAGGTG 57 80772150 80772169 AGGTGGGAATCTTGTTACTC 57 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000011801 1 1 3 80 13 52291784 52294635 CCAACATAGTTCATGGCTCG 59 52290979 52290997 ATTGCATCCTCTCCTCAGC 60 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000087220 1 1 3 85 20 34656745 34684323 ATTTCAGCAAGTGTGGCTC 59 34656678 34656697 GTTAGATGGAACAGCTGTGG 59 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 2 2 2 80 11 84045612 84045630 CTTTGGCAAGATCAGCGAG 59 84044725 84045569 CCAAAGTCCAGAATCTCGTC 58 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165 3 1 2 91 5 126657848 126657867 GGTATGGACAGACTCAGACC 59 126650714 126657794 AACTGTAGAGGGCGTTCAC 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 3 1 1 60 1 88621381 88621399 ATCCTGTACAGACTGACCA 57 88621816 88621836 AGCAGTATAAACAGTAGGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 3 3 3 80 X 77284302 77290476 CTACTCCTACTGTAGCACCC 59 77284241 77284260 ATCTTTGGCTTGTCACTGAC 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173 3 1 2 117 4 57419077 57443585 CAAGATGCTAATGGCCTGG 59 57443666 57443684 ATATCCTGGTGGTCACTGG 59 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 2 2 2 86 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108086 25108105 GGTTGGCTACTTGATTGAGG 59 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 2 2 2 89 15 103327086 103329324 TCTTGATCAGGAGTTTGACGA 59 103327017 103327035 GACTGCACAAAGCACTCAG 60 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 3 2 2 90 15 103327087 103329325 GTCTTGATCAGGAGTTTGACG 59 103327017 103327035 GACTGCACAAAGCACTCAG 60 NA Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 3 2 2 80 14 38230952 38230970 TGGGAATCAGGTTTCAGTG 57 38231013 38231816 GCTTCCGCTTCTTTAATCTC 57 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000039984 3 1 4 91 7 78512276 78520246 GACATCAATGTCTTTACGTCCA 59 78520298 78520316 ATGTCTCCACTGATGCTGG 60 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000035323 2 1 2 97 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858665 47861256 GCTTAAATGCTTCACGACGT 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 1 2 6 127 10 53800352 53800372 AGTAAAGGAACTCACCTACCA 58 53800563 53848210 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599 3 1 6 80 10 53718083 53718101 CTTAAGGCGGAAAGGAGCT 60 53718143 53746358 GATCAGGAGCATTTCGATCAG 59 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867 3 1 3 81 12 31537150 31538697 TGTTAGAGAACACCCTGGAC 59 31544456 31544474 TTAAACTGCTCGCTTTGCA 59 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000089665 2 1 2 80 16 39994276 39995559 ATCATCCAGAGTTCTGGATCC 59 39994216 39994234 CCTCAGAGCAAGAAGACGA 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 1 3 3 80 4 162017578 162017596 GTCTAGCTGACTGTGGTGG 60 162017174 162017537 TCAAGTTCCGTAGGAATCTCAG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000084230 2 1 7 80 1 83654927 83654950 CTTCTTATCTCGGACAGTCTCC 60 83654989 83655011 AGGAACTCTTTGTCCTCATAGTC 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 3 4 7 89 1 83714839 83714858 CTATGAGGACACGGAGTTCC 60 83714910 83749626 ATGTCATAGAGCTGCCCTG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042 3 1 2 92 4 123521989 123522007 CTGGAGTCTGAGTTGGAGG 59 123518817 123519631 CATTCTGGTTATGTGGCTTCTG 60 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 1 2 2 80 18 11780756 11780775 AAGCCTGTAAAGATGTGACC 58 11779025 11780716 ACTCCTTCAAACTAACTCTTCC 58 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930 2 1 2 81 7 106739114 106742870 TTCTTCAGGAAAGAACAACTGG 59 106728766 106728784 CACGAGGATTAGAAAGGCG 58 NA Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000077146 1 1 2 80 7 12491071 12501653 TTCCTCAGGATCCTTCATGC 60 12501694 12501714 GGATATCTGACAGGGAATCCA 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 2 2 3 83 2 261397314 261399391 GTTAATTCACTCCGGTGGC 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000081815 1 1 4 80 9 104692945 104694148 ATCTGGGCAAATCTCTTGG 58 104692883 104692904 GACTCAAATTCTTCATTCCTCC 57 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000081815 3 1 4 81 9 104692945 104694149 TATCTGGGCAAATCTCTTGG 57 104692883 104692904 GACTCAAATTCTTCATTCCTCC 57 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 1 1 1 82 10 75201615 75201633 TCTCCATCATGAACACCCG 60 75191129 75191147 CAGCTGGACAATGGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000008359 1 1 2 80 6 33841512 33841530 TCTTGGCTTTGGAAGTGGT 60 33841574 33845673 GAACTGCCAACTGATGAGC 59 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 1 3 3 82 5 59497115 59498121 ACTACCAGGAGAGCAATGG 59 59498165 59498185 GATACTTTCAGGCTCTGACTG 58 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 1 2 2 80 4 153909022 153909323 ACTAGACAGCCAGTTTGTG 57 153909367 153909385 TTCTTCTTACGGAACACCC 57 NA Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150 3 1 2 141 17 89923570 89923588 AGAGATGCTCTTCCTCTCG 58 89881466 89881487 GGTTTCATACACTGATCGTGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245 1 1 2 84 8 22620577 22620595 CTACTGCCTACGACCTGAG 59 22620643 22620939 ATCCCTGTGTTGGCTAAGG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 3 4 4 81 17 4256428 4270621 TACAACACGAACGAAGAAGG 58 4270665 4270683 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 1 4 4 80 17 4270325 4270621 ACAACACGAACGAAGAAGG 58 4270665 4270683 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 1 2 3 81 4 163419650 163419669 TGGATTCTTTCGAAAGAGCA 58 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311 3 1 2 105 10 59868436 59871370 ATCCTAATCTGCAGCTGGAG 59 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000085483 1 1 2 81 4 56815549 56815568 TCAGGAGAGCTTTCTTGGTC 60 56815612 56820315 AAAGCCAAACCATGTGGTC 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000081679 2 1 2 138 8 17496894 17496912 TACAATATTGGGCCTGGCT 59 17485228 17485508 AGAATGACATACCAGGCTCTG 60 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603 2 1 2 83 9 92628697 92628720 CAGGACTGTACAAAGGATAAATGG 60 92628762 92633482 GGACTGTAGGATGCTTCCC 60 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000078987 1 1 2 88 9 92628697 92628720 CAGGACTGTACAAAGGATAAATGG 60 92628763 92629386 GTGCTTGTGTATAATCACCTTCC 60 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425 1 1 2 87 11 82633946 82633964 TACAGGACGAAAGCAAGAC 58 82632576 82633895 TGAGGAATCTCATGTGGCT 58 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 1 2 3 85 6 135025758 135026358 GCCTTCAGATCAACTCCAG 58 135024800 135024819 TGAGTCTCCATCATAAGGGT 58 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404 3 1 3 142 15 109738207 109738225 AGAAAGATTGGGCAATGGC 59 109735773 109737531 CTTATTGGTTTGGGAGCCAG 59 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 1 2 2 95 7 12517651 12517671 AGCAAGATCTGTGTAAATGGG 58 12516849 12517594 TTTGATGGCATTTCCCAGC 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992 2 1 2 81 8 114560274 114562649 GGAACAATAGTCCTTGTTGGA 58 114559609 114559627 GTACCAAAGGACTGGTCCA 59 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000037296 1 1 2 82 12 31353729 31353747 TCATGAAGCTGGAGACCAG 59 31353792 31355424 AGACAGAGTCTGAGTCTCGA 60 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000064207 3 1 3 97 5 173483482 173484730 ATCTGAACAGCAGACACAG 58 173483403 173483421 TAAGGGCATCTTTGCATCC 58 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000049974 1 1 2 96 11 70140169 70140187 TGACGTCATCCAGATGACG 60 70130713 70130732 ATAGTCCTCCACCTGTCGT 60 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696 1 1 2 80 12 29071172 29071193 GATGGTTATCATCAACCAGCTC 59 29071907 29073006 TTGTTAGAGTCGTCCTCATCTG 60 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000014709 3 1 5 99 2 1500246 1500268 CCAGAGTATAGGAAACTTCTGGA 59 1455435 1499064 ATGTTGCATCTATAGCATGGTC 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000065748 3 1 3 85 11 11086249 11089576 CAAACATGGCACATTCAAAGC 60 11086184 11086202 TCAGAAATCAAGGCTCCGG 60 NA Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599 1 1 2 82 13 53021769 53021787 AGATCAAGGGCCATGACAG 60 53021833 53022863 CACTGTCAGGTCACTGGAG 60 NA Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 1 1 1 60 18 15918626 15918644 GAACTTGATGACCCTGGAC 58 15918355 15918375 CTACAAGTACTTCCCGTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 2 1 1 138 7 12437429 12437447 AATGGAAGTTGGAGTCCAG 57 12438828 12438846 TGAATGAAGTCAGCATGGG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 2 1 1 85 6 140980171 140980190 AAGTTGTTGCTAAACTGGGT 58 140979981 140979999 AAACCTCCTCCATGTACCG 59 NA DesignNoJunction Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645 2 1 2 80 12 30223236 30223255 TTCAGCACATATGTGGTGAC 58 30223297 30223576 CTATGACACTATCCTGGCCT 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000067545 1 1 7 83 3 48276240 48276260 GAAGAACAAAGTATGCTAGCC 57 48276305 48285908 CTTTCGGCTTTCAATGCTG 58 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000087621 3 1 2 81 X 29476583 29476604 GTAAATGAAGCAGAGGATTTGG 58 29476645 29481421 TTAAGTCTGCTTTGTGCTCC 59 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 3 3 3 80 5 122126895 122128457 GATCATCTAGCCAAGGAGCT 59 122128499 122128518 CCGATTATGGGAGTACCCAG 60 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 2 3 4 81 17 34832491 34832509 AGTCTCTGAAGAGCTGAGC 59 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000083194 3 1 2 80 8 22292925 22292943 GATGCTACCATTTCGAGGG 58 22293068 22300246 GTAGAGCAGAAAGTCATAGTCG 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000086607 1 1 2 82 4 24619255 24619273 TATACCCAGGCTCAGAGCA 60 24619318 24623343 GTGGTATAACCAGTGGGAGG 60 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 1 5 5 80 13 55062935 55064383 GCAGCTTTGAGCAATACCA 59 55062873 55062892 TTGCTTTCTTCACTTGTCCA 58 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 1 2 2 80 16 47891486 47893208 CTCTGTAACCATGACGCTG 58 47893250 47893270 TCCATAGAAGTCAAGAACACC 58 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000082042 3 1 2 84 17 10052067 10052089 AAGAGATACCTAGCAATCCATGG 60 10050167 10052023 CTTTGCTTCTGCTGCTCTG 60 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000055318 3 1 2 80 2 252808745 252809091 CTTTCCAGTGGAACGAGTC 58 252809134 252809153 GGACAAACAAGGTCTGACTG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 3 2 4 95 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583966 4584134 ACACCATTCACTCCTCTGG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 1 2 4 91 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583962 4584130 CATTCACTCCTCTGGGCTC 60 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910 2 2 3 83 X 70978681 70978699 ACTGAAGTCAGCCTCACTG 59 70977622 70978636 TGAAGAGGATGCTAGGTTCAG 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610 2 1 3 80 4 164445933 164445953 TGGCGTAAATGTATACAGACC 58 164439030 164445893 GGTCCTGAAGGAACTTATCCT 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079108 1 1 5 80 3 8594948 8594966 AGAATGACAAGCTACGCCA 59 8595008 8596957 GGCTCCAGTATCTTGTTTCCT 60 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000082672 2 1 5 80 3 8569581 8571780 AGATCGACAACCAGTATCAGTC 60 8571818 8571839 TGAACTTCTTGCAACTCTTCTC 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000064255 3 1 2 80 16 8760624 8772195 AAAGCTCTTTAAGTTCGAGGGA 60 8772234 8772254 AATTCTTTCACCCACTGATGC 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484 1 1 3 80 1 217565156 217573322 ACTCGTGGATAAAGATAAACCG 58 217573362 217573381 GATTCTATGGCCACGTTCTC 59 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484 3 1 3 81 1 217565153 217573321 GGAACTCGTGGATAAAGATAAACC 60 217573360 217573379 TTCTATGGCCACGTTCTCTG 60 NA Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 2 2 2 80 10 13163197 13166142 TTTCGAGCAGATGACACCT 59 13163135 13163153 TGGCTTCATCACATCTGGA 59 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 1 3 3 100 6 136245338 136245357 TTCTGTGGTCTGTGAATCAG 58 136247590 136247608 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 2 2 2 80 17 9692778 9692797 AATTCGCCCAATCAGAAGAG 58 9692839 9693027 AGGTGATGTCGATTTCTGGA 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 3 2 2 80 10 88513967 88513985 CAGCATGTCGTAGTTTCCA 58 88510974 88513924 CATTGGCATTCTTGAACTCC 58 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 1 2 3 80 13 57008587 57008692 CCGATATGCGTTGAGTATGAG 59 57008527 57008545 GGGAGGGACAGATAACTGG 59 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588 2 1 2 80 5 146691741 146695017 TCTCTGTCAAGCTATATCCTGTG 60 146695057 146695075 GTTCCCACTGTGTACTCCT 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 2 2 4 83 10 23664288 23664969 ACAGCAATGGGATAAGGAC 57 23675996 23676014 GGCCTTCATACACTATGGC 58 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000088795 2 1 3 115 6 103380860 103380878 CCTTCAACCACTTTGACCG 59 103378152 103379823 AAATTCTGCCTCTCCCTGG 59 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000088795 1 2 3 80 6 103379893 103380869 ACTTTGACCGGGATCACTC 59 103379831 103379851 TGCCAATATCATAACCCAAGC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000081291 3 1 3 96 1 198311186 198311204 AGATAACCTGCAGTACCGA 58 198310967 198311126 TTCTGCTTCCTCCTCTTCC 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826 2 1 3 98 10 15457228 15457246 CTATGGATGTCCGAGTTCC 57 15454441 15457169 GCGTCATAGCATAGTTAATGAG 57 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 2 1 2 72 2 95078030 95078048 AAAGACCAGACGTGGATGG 60 95173506 95173525 AGTTCAAGATCCAGGAGACG 59 NA DesignNoJunction Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 2 2 2 80 1 57726502 57726523 CCATTGCTACCTCATTAAACCA 59 57726558 57727344 CTACTACGGATTAAGTGTTGTAAGG 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 3 2 2 108 19 10131817 10211830 CACCAAAGATGATTTCAACGAG 58 10131504 10131524 GTACTTGTGACAGAGCTTCTG 59 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 1 2 2 80 16 48341957 48342373 CAGTGGATTCAGGAACGAG 58 48341895 48341914 CCAGAAGATGTCAGTCATCC 58 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297 3 1 2 80 7 37018733 37101427 ATGATAAGACTCCTGGGAGAG 58 37101466 37101487 TGACATCCACCGTATTTATAGG 58 NA Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 2 1 1 86 18 27658069 27658087 GCGCTTTCAATCCTCAAGG 60 27658807 27658827 CGTTATTCAGAGCGATGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151 3 1 2 81 5 147133166 147133868 TTGAAGAGATGGCCTCAGTG 60 147133103 147133122 AGCTCAGCAAGGATATCCAC 60 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 2 2 2 80 10 109969455 109969559 ATGTCATCAAGGTCAGTGTC 58 109969602 109969620 TCTCTGGAGTAGACTCAGC 58 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821 3 1 2 126 10 109966944 109967713 CAGGTGTTTAACTTGCAGGG 60 109967801 109968419 CATACTGCTCCAGATCCAGG 60 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000009666 1 1 2 91 6 76188204 76196121 CGACTCTACCAAGTAGAATATGCT 60 76196171 76196189 ACAATAACTGCGCAGTCCT 60 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 3 1 2 103 6 139637322 139637340 CAGCTTGGGTTTCCTTGTC 59 139637127 139637145 AGAGTTTCAGGGACCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000033017 1 1 2 80 17 1723453 1723471 ACAAGGAGACAGACTTCGG 59 1715686 1723412 GACTGAAGAATTACTGTGAGGG 59 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525,ENSRNOT00000066934 3 2 2 80 9 93183044 93183063 TTTCTTCCCTTCTATGCCCT 59 93183106 93188807 CCAAGAATCCTGGAAGAGC 58 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401 3 1 2 113 12 37519722 37527652 GATCAAGCGACTGTTTAGCT 58 37527728 37527746 TCATCTCGGTGGGTAATCG 59 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368,ENSRNOT00000066233 2 2 2 108 7 117002973 117006988 CTACACATGTGGCATGCAG 59 117007060 117007078 TTATTCCAAGGCCCACCAG 60 NA DesignRelaxed Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000057872 3 1 2 129 20 27039228 27043799 AAGGAGATCTGCACATTAGTC 58 27043888 27045978 TGTCTTCATTTCCTCTCACAG 58 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312 1 1 2 80 14 44915835 44915854 AAGTGCTTCCCTCAATACCA 59 44915896 44917732 TGTCCAAGGATAGCCATGTG 60 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 2 2 2 142 2 200619951 200625219 AAGAGGAACTGTCCAAGCT 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 2 2 2 142 2 200619951 200692120 AAGAGGAACTGTCCAAGCT 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 1 2 2 80 9 16655691 16655710 TAGCTATCTATGAGCGCCAG 59 16655753 16656088 TTAGGTAGCAGGAAGCCAG 59 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000078846 3 1 2 82 7 117149804 117149823 GCGACACGATCTTCATTCAG 60 117149548 117149635 GTCAGGAAGTGCATTGGAG 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000064105 2 1 2 85 19 12553395 12553413 TCCCTGCTTCTGGAATGTG 60 12504771 12553352 CATCTGTAGTCTTTAAATCGGACAC 60 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 1 3 3 80 13 56616865 56616883 ACCCTGTCTGAAGTGTCTG 59 56616922 56618537 CATCCCTTTAGATTCTCTTCTCAC 59 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000085464 3 1 2 80 12 32533696 32533714 AGATGGCACAGTACAAGGG 59 32533755 32594998 CATCTGTCAGAAACCTTTACCA 58 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 1 2 2 80 5 131933734 131935458 CAAGGTCACAGCTATAAACTTACG 60 131935494 131935515 GAGTGACATTCCACTATCACAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000082455 3 1 18 104 1 43454953 43475249 AGTTACCTCAGTGCATGGAG 60 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 9 18 60 1 43508749 43508768 TGGATCGAACTAACCACCAG 60 43527519 43527537 AGTTAGGGCAATGGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463 2 1 3 118 2 235691792 235691811 CAGATGGTCCTATAGGACCC 59 235703214 235704476 CTCTCCATCTTTGCCAGGT 59 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815 2 1 2 90 9 16754372 16754634 GAAACTGGATAAGGCCGTG 59 16754688 16754706 GTTACTGAGAACCTGCAGC 59 NA Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 2 2 2 108 17 10758182 10758749 CAGCAGATTCGAGATAAGTATGG 59 10758096 10758114 CCTTCTTGGGTCTGGTCAG 60 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 2 1 1 65 X 15425829 15425847 CGAGACTCCTGATGTGGAC 60 15425376 15425394 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 1 2 2 92 9 82597736 82597756 TCATGGACCAATCAGTGAGAG 60 82597810 82598553 GATTCCTCAGCCAGGAGAC 60 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000084765 2 1 2 81 11 7413952 7413970 AATCATTTGACGCACACGA 59 7416235 7417631 TGGGTTGTATAGAAGCTGGAG 59 NA Rattus norvegicus 81 Mchr1 ENSRNOG00000018895 ENSRNOT00000025564 1 1 1 60 7 122456926 122456946 GCCAGGATAATCTCACATTGC 60 122458232 122458251 TTGATGTAGGAGACACTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 1 2 2 80 1 277664025 277664821 AGTTCTCAGAGGATGACCA 57 277664865 277664883 CGACATATCCAACCAGGAC 58 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 3 2 2 80 14 77314620 77314725 AGTTTCAGAACTGGATGAGGA 59 77314560 77314579 CTTCGGAGAAGATGTTCCAC 58 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000080304 2 1 3 82 6 136119896 136125527 ACTCACCAGAAGAAACATGTC 58 136127021 136127039 TTGAGCCCTCATATCTCCC 58 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337 2 1 2 82 2 250726901 250726923 CCCTGAAGGAGATAACATTATGG 59 250722687 250726860 ATTCCTGTTCAGACTTCAGC 58 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910 3 1 2 89 7 30095634 30113478 CTTATTTGGAGTGCTAACAGAG 57 30095566 30095585 AACTGCACATTGTTGTATGG 57 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 2 2 2 81 12 40435420 40435438 GGTTCTGAGGAAGAAACCG 58 40435483 40438266 AAGGGCTTTCATGATCCTG 58 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 1 1 2 80 1 85499736 85499854 TGGAGTTTGAGGAGGAAAGAG 60 85499893 85499914 TCTTGGAATGGATCAATTTCCC 59 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000082030 2 1 2 124 10 70720211 70720229 TATGGTGGAGACCGAAGTG 59 70720315 70721579 CTGTAGTCATTTCTTCCTCCC 58 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 2 2 3 80 11 34080918 34080937 AGTTACCAGACGGGATAGAC 58 34080977 34081103 CTTCACAATTTCTGAACTGTGG 58 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 3 2 2 81 X 14967045 14967243 GACTCACAGATGTCTTACACAG 59 14966985 14967003 GTTCCGTGTAAATGGGCAG 59 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883 2 1 2 85 6 71180536 71198957 AGGGAGGCTATTTGAGTTCC 59 71180470 71180488 TTTCAGAGGCAGGATCGTG 60 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 1 2 2 87 4 170781049 170781964 TGAAATGGAGTTTAACCCAGTG 59 170780983 170781001 TTCAAAGGTTTCTCGCAGC 59 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734,ENSRNOT00000086756 1 2 2 80 1 16822407 16822428 TTGAAGATGATGACTTGTACGG 59 16822468 16827582 AGTAAATGAACTGAGCAGCTG 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 1 2 2 80 7 70337182 70337200 AAAGGTGTCTGTCCAGTCC 59 70337243 70337512 GAGAGCGTATTGGATACCGT 60 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000044015 1 1 2 87 8 4333345 4333363 TGGAAGAATGGAATGCCAG 58 4333411 4375131 CACACTGATCCATATTTGTCTC 57 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985 1 1 2 80 12 37706799 37707370 GAGTTTAATGACCTCTGGAAGAG 59 37710347 37710365 ATCACACTGAAGAGCTGCA 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744,ENSRNOT00000064783 3 2 2 82 8 25889916 25889935 AGTCGGAAGAATTCAGGACG 60 25880855 25889874 CTTGGTTATCAGTTGGTTCTGG 59 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000065058 2 1 2 112 9 100942901 100942919 AAGACTGGATGCTGACCTG 59 100942995 100943160 TTTCTGACTCCGACTTGCT 59 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 1 1 1 60 6 141488230 141488248 AATGCAGCTGGATCATCCT 59 141487841 141487859 TGGACTTCTGAGTTGACCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211 3 1 2 80 14 783835 783856 AATGAGGTTTCCAATGAGACAG 59 784099 784345 GAGAATGGAACACTTGTATGTCC 60 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 1 4 4 80 16 54382448 54383439 GGCAATTTCAAGACAACTTTCC 59 54383478 54383498 AACCTCTTGTTGACCTTTGAC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254 1 1 2 81 8 19887233 19887762 TTATTCTCAGGAGTTCGTGAC 58 19887804 19887823 CTGAGAAGAATCTAGCAGGG 57 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254 3 1 2 83 8 19887232 19887762 TTTATTCTCAGGAGTTCGTGAC 58 19887804 19887824 TCTGAGAAGAATCTAGCAGGG 59 NA Rattus norvegicus 81 Stpg1 ENSRNOG00000031448 ENSRNOT00000077610,ENSRNOT00000041600 2 2 2 80 5 153855812 153857453 ACAGAGTACAGAAAGGTTTCAC 58 153857493 153857512 CTGGGATTACTGACCTCCTG 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000040065 3 1 2 84 11 782890 782908 CTCTCCATCCTCATCCTGC 59 764396 782846 GTAGATTAACTTCGTTGGAAGGC 60 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 1 2 3 80 5 12526928 12526948 GATAAAGCGTTGCATACTCTC 57 12504496 12524950 ATCATATGCAACCCTGAGC 58 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 1 2 2 80 11 17129417 17129436 AACTGGGAACAGACAAAGAC 58 17080150 17129377 GATTAGACTTTGGTACTCCCTC 58 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367 3 1 2 116 X 15100049 15100706 TGAATGGAGAGTCCCTGGA 60 15100786 15100804 CTCTAGAGTAGCTGCGACC 59 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 1 2 2 80 16 54024577 54024702 GGTGGTTATCTGGGTATCCT 58 54024740 54024763 CAGAACTGATCTAGTGATAAACCC 59 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000042735 3 1 2 85 6 972255 972276 AGGGATCTCAAATGTCATTCAG 58 970083 972212 GGATGACTGTCGTCAAATACTG 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927 2 1 2 80 14 78683104 78684864 AGGAAAGAACAAAGGTCTCAG 58 78682781 78682799 GTCGAAGATGCAGTCACTC 58 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 2 1 1 60 1 215704026 215704046 TGAAGATACAGTGCAATTCCG 59 215705028 215705047 GTAATTTCGAAGGTCCACCC 59 NA DesignNoJunction Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666,ENSRNOT00000032783 2 2 2 80 2 23322015 23323957 CAGTATAGGCCAAGTTTCCG 59 23323998 23324018 ACCAACTCTTTGCATAACCTG 59 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 1 1 1 60 16 14319855 14319874 GAGTGTACCTGTTCAGAGGA 59 14320191 14320212 CCAAAGACATAGACATGCACTG 60 NA DesignNoJunction Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341 3 1 2 80 7 54875539 54875559 GGCTACAAACAGTACATTCAG 57 54875599 54878769 TCCTTCTACCTTCTTGTTAGC 57 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 1 2 2 81 4 68640022 68640511 CATACCAAATGGGTGACGTC 59 68640555 68640573 TAAGCCACATCTCTGAGGC 59 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000077715 3 1 2 81 6 98437573 98437591 ATCACTCTTCCATGCCCAG 60 98435714 98435848 CCTAATAACTGGTTCTGTAAGGGA 60 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200 2 1 2 157 2 204886231 204932378 ATCGCTCTCCTTCACAGAG 59 204932498 204938635 GACATTACGCTATGCACCTC 59 NA InUTR Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000064201 1 1 2 106 4 65773730 65776146 TAAACTTAGGGTTCACGGC 58 65773642 65773663 CTCGCTGAACTTCAAATATACG 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 1 3 4 80 8 124844301 124884184 TGTGTCAGTATATGACCGCT 59 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 1 3 4 80 14 79355780 79355798 TGTTGCTGAGACTGAGGAG 59 79355840 79387347 CTAGCAAGCAAATTCCTTGTG 58 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742 3 1 2 81 16 84603312 84614348 CTGTCACCAACGGTTTAGC 59 84603249 84603270 TGTCTCTGAAATGATGAAGTCC 58 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 2 1 1 60 16 50358424 50358442 GTGTATCGCAACAAGAAGC 57 50340704 50340722 CCACAGCTAAACTCACCAC 59 NA DesignNoJunction Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637 1 1 2 81 5 149982076 149987672 TATGCCTAGCAGATCTGGC 59 149982013 149982031 ATCATACTGAGCCTGGCTG 59 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000025104 3 1 2 85 1 165647871 165649110 TGGAGGATCGAACCATCAG 59 165649159 165649177 GTCACGGATGTAACTGGGA 59 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349 3 1 2 82 4 157130580 157130790 ACCACTGAAATCATCAAGTGC 59 157130834 157130852 AACTGGTACTGAGGCTGTG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 2 2 3 102 8 22967060 22967651 GACAGTTCGAAGATTCGATTCC 60 22967714 22967732 GTAGAAGGGATGGGACAGG 59 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 1 3 3 81 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942060 144943891 CATTCTCCATGGAAACTGGAC 59 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 2 3 3 83 7 144941888 144941906 CTAAGCGTCTGCTCTACTG 58 144941492 144941844 GCTTAGTACCTTTGTTATGTGC 58 NA Rattus norvegicus 81 Itm2c ENSRNOG00000017359 ENSRNOT00000023535 3 1 1 60 9 92927283 92927304 GACATCATCCATGACTTTCAGC 60 92928130 92928148 ACTTGTCCAGGGAGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000084053,ENSRNOT00000078412 2 2 4 80 20 12855154 12855175 TTGCTACCTATGAGACTAAGCG 60 12854530 12855117 CAATCATGATGTCTCCAAAGACC 60 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000051060,ENSRNOT00000042581 1 2 5 107 11 27812387 27831347 AATGACGTTGAGCAGTGTC 59 27812298 27812319 AGATTTGCCCTTAGTTCTTGAC 59 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000074720 3 1 2 81 1 83049377 83049398 CCATAGTGATCCATTCTTGGA 57 83049786 83049806 GCCTTCCTCAAAGTATTTGTG 58 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578 1 1 2 97 1 199352936 199352954 GAGTTACCGGTGAGGATCG 60 199353015 199353272 TATAGCTCGTGCACATGCA 60 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000026466 1 1 2 80 1 199352923 199352943 CTACTTGCAGCAAGAGTTACC 59 199352984 199353008 TAGGGTTGCAATGATGAAAGG 59 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 3 1 1 60 13 83200336 83200354 ACCTACACCATCAAGGAGG 58 83199548 83199566 TTAGTCCTCGTTTGGTGAC 57 NA DesignNoJunction Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 3 2 2 80 13 80738307 80738327 CCTGGAAGAAGGACTAGAACC 60 80727380 80738267 TCAACATGTTCCGTGAATCTC 59 NA Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000027064 1 1 2 98 9 82637050 82637069 ATCAACTGTGGCATCTACCT 59 82637130 82638098 TGGAGATTCCTCCAGTTGC 59 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 3 2 2 83 9 19126820 19134321 CATGTGGTCAAGATTGTGGC 60 19126756 19126774 ATTCTTGAGGTACCGCCAC 60 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020 2 1 2 111 1 186068024 186068044 CCTGGAATAACATACAAGCCA 58 186077722 186106485 CATAGAGCTGCTGAAGCTG 58 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000084302 2 1 2 82 2 207420796 207473265 TTTGCTAAAGCTGCGATCG 59 207473309 207473329 GCTTCTGTGAGTTTCTGACAG 59 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 1 2 2 80 6 7920208 7920227 ACCCTGAGAAGAGAAAGGTG 59 7920270 7924075 TGCTGGTAAACATCAGCGA 60 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741 1 1 2 80 11 30393668 30393686 CCAGTACAGCCAACTTTCC 59 30393203 30393625 TTCCATTTCCTGCTGATGTG 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756 2 2 3 80 3 14637211 14643832 GGAATATGTCAACAGGACCCA 60 14637151 14637170 ATGCTGTCTCCATTTCTCCC 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 2 2 2 80 1 83113463 83114889 CCCATGTCACAGAGAAAGTC 58 83114932 83114950 TGGTACGATCATCAAGGGA 58 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000003705 1 1 2 101 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001085 88002678 AATGTTCACCTCCTTCGGG 60 NA Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241 2 1 2 117 16 18640873 18645733 TGGTTATTCTAAGAAAGGTCCC 58 18640777 18640796 TCTATTGGGTCATTTGGCTG 58 NA InUTR Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 1 2 2 87 4 67370718 67370736 GAAGAACACCCTCACACTG 58 67371886 67372035 CAGCTTCACCTTATGGGTC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000073696 3 1 6 88 13 84491835 84491858 GCTCTATTACTGTATCATCACCAC 59 84491905 84522955 AACCTTTGCGAACCAACAC 60 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000032941 2 1 2 85 10 92227699 92227717 CTTTCATCCTACGCAACGC 60 92227765 92228314 GGAAAGGTACACCACATTGC 60 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026 2 1 5 80 4 176279634 176279654 AAAGGCCAAGGAAGAAACG 59 176271190 176271209 GAACAGCATGTAAATCGGGT 59 NA Rattus norvegicus 81 G4 ENSRNOG00000039658 ENSRNOT00000076270,ENSRNOT00000060819 1 2 3 80 20 5118415 5118570 TGGGATGTGGTCTTGACTG 59 5118609 5118632 CTACTCTGAATTCAGAAAGGACTC 59 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 2 2 2 80 10 56228463 56228668 TCAGTGAAGAAGCCCTGAG 59 56228712 56228730 GGGCTGGAATAATCTCTGC 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 2 3 3 80 7 117362799 117362817 CGCTTACCTTACTCCCACC 60 117362656 117362757 ACTTGCACATTCTTTAGCTGG 59 NA Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000085435 1 1 2 80 16 54112013 54112032 AAGCTCCTCAGAATGACAGG 60 54107339 54111970 GATCTCTGGCCTTTGAGGG 60 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000080691 2 1 2 110 X 157357228 157357247 AGCTTGCTGAAAGGAAATGC 60 157358461 157362691 TCCTTCAGGCATTAGAAGATCC 60 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 1 2 2 80 8 40007634 40007652 TGATAGCTGGTCTGGTCCT 60 40007694 40007959 TGGCATCTTCCTTGATATCGT 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067349 3 1 6 100 5 150116064 150122084 GACCAAGCTCAGGATTTAGAC 59 150115984 150116002 GGTTCGGGTACTGATTCCA 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 3 3 3 80 7 68452993 68453012 GTACTGGAATGATCTTGGCT 57 68450351 68452952 ATCCTAAACCTCCAATGAAGC 58 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 1 2 2 80 8 116514151 116514258 GCTATACACAGTACACTCAATACTC 59 116514095 116514113 ATGCATCAGACTCCAGTCC 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 3 3 3 80 3 134293428 134293446 ATCTAGCCGAGATGTACGC 59 134292326 134293388 CACAGACTCCTTTATAAAGCTCC 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684 3 1 2 83 1 251266107 251266128 GAAAGACACAGTCATCCTACCT 60 251262383 251266063 AGGAGAACACCTTTGGGAG 59 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000052017 3 1 3 92 4 150797189 150797207 ACCAACTTCGACAACTTCG 58 150788365 150797134 ATCATTGACCCAGTACAGCA 59 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510 1 1 3 80 12 44072334 44072352 TTACACCTGCTGGAAGCTC 60 44073513 44076180 CCTTTGCGATTCATCCATGAG 60 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985 3 1 2 80 7 136791554 136852578 TCCTCTTCCAAGATTCTCCC 59 136791493 136791513 GTTTATTCCTCAGCTTCTGGA 58 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 3 2 2 82 12 46989769 46989787 AGTTTCTCAAAGGAGACGG 57 46988298 46989724 CTTGATTGCTTTCTGGACAC 57 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 102 10 109902825 109903324 AACTGAAAGTGGTCGGGAG 60 109903388 109903408 GAGATTTCTGCCTCTTTGAGC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 2 3 3 80 2 27006206 27006225 GTTGAGTCTGGTGTTTCACG 60 27006267 27009105 AGGGTTACTTCCTAGCACAG 59 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843 2 1 2 92 9 43021401 43021419 GAACAAGCAGTTCTTCGCT 59 43018018 43021348 GAAACATGGTTTGCATATCTGG 58 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984 3 1 2 81 12 40631517 40631538 CTTGAAGCACATCTAATTGCAC 59 40628106 40631476 AGTTACTCAGATTCACCGGA 58 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000070821 1 1 2 82 2 87010945 87010963 TTTCCAGACATTCCTGCCT 59 87011011 87011032 ACAAAGGTTTACCACACTCCA 60 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 2 2 2 83 11 31818580 31818599 GTAGATCTCCCATTCGTCGG 60 31818640 31820187 GAGCCTTATCCAAATCTGTTAGAC 59 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 1 2 2 80 1 89353353 89354513 CTGAGCGTCATGTATGCAC 59 89353291 89353309 CAGGATGGAGACTGTCTCC 59 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 1 2 2 80 7 139235710 139235728 TGTACCGATTGGCTCTCAC 60 139235307 139235669 GGATGAAGGTCATGTCTTTGAG 59 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 2 2 2 80 7 91857357 91857379 TATCCTGATTACCAGATCCAAGC 60 91857415 91860638 CAGAGTTAGTACAATGTTGGCTG 60 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413 2 1 2 110 11 38088744 38091020 TTGAACTCAGGGTCACCTC 59 38088652 38088670 CAAGTTGTAGCCACTGGGA 60 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000085320 3 1 3 81 8 22423613 22424315 ATGTACAGAGATGGCGTCC 59 22424357 22424378 GTTGGGTATACTGAAGAATGCT 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558 3 1 2 95 19 24416309 24416327 CCGGGCAGATTTGATTGAG 59 24416386 24418159 AGATGTTCAGCCACATTGC 59 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256 3 1 2 133 9 45205608 45291841 TGTGTCTATGAACCAGATAGGA 58 45204260 45205516 CCCTTGTTAGTCTTGTAGGGT 59 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043 1 1 2 80 5 73937562 73941041 CAAATATGGAAGATGAAGATCCTGG 60 73937506 73937524 GGTGACTGTGGTAAACAGC 59 NA Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874 2 1 2 80 X 158366045 158374842 CTGATTTCAGTTCATGGTGGT 59 158374882 158374902 CGTTCATTTGTAGATGCTCCA 59 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 3 2 2 89 1 219441017 219441542 TCTATGATGAATGCAAGAGACG 59 219441592 219441610 CTACAATGGCTGCAATGGG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 80 13 91155991 91156009 TGGAAGCCAATGGCTACTC 60 91154513 91155158 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000089895 2 1 2 96 7 137290341 137290362 CTGAATATCACCTGTGAATCCT 58 137294512 137303369 ACAATGTAACCCACACTCC 57 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 2 2 2 80 16 9650719 9650740 TCCTACCTTCTCTATCAAATGC 58 9640822 9650678 ACTAGGCTTTAAGTCCCGA 58 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348 2 1 2 80 19 22594182 22603038 CACTTCAGACAGGAAGCAG 58 22594120 22594140 GTGGAGGAAATAGATCACTGG 58 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000023446 ENSRNOT00000037931 3 1 1 80 14 3292530 3292551 GACAAGAAGCCATACGTTAGTG 60 3291953 3292490 TCGAGACTTCACTGCTACAG 59 NA Rattus norvegicus 81 LOC680885 ENSRNOG00000039749 ENSRNOT00000060975 1 1 1 88 16 8555092 8555110 TGACATCCAAGACCTGGAG 59 8554207 8554225 ATCAGAAGGCGTCTAGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000022138 3 1 2 85 2 27943485 27945073 TTAGGCCAATGGGTCTACG 59 27943418 27943436 CACACCGAGTATAGGCAGG 60 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 1 2 2 80 19 24853412 24853430 ATGTATGATGTTCAGCGCC 58 24853473 24853868 AACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 LOC102551064 ENSRNOG00000037159 ENSRNOT00000056084 2 1 1 60 2 205714703 205714723 ATGAATACGAAGAGGATGAGG 57 205714742 205714763 CGATCTTCATCGTTATCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3f ENSRNOG00000007548 ENSRNOT00000010468 3 1 1 83 3 138695410 138696613 TCAGTAAGGTAGAGTTGTCCA 58 138696655 138696676 TGATAGTCATATCCACTTTGCC 58 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 3 2 2 80 5 62163813 62163832 CCTCAAGAAGCTGCTATCCA 60 62162235 62163770 ACAGAAAGGTTGTCCTGGT 59 NA Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 3 2 2 80 X 20227472 20227683 GGAAGAAATGGAGGTGACAG 58 20227411 20227431 TCTGGATCAGAAGGTTGAGAC 59 NA Rattus norvegicus 81 Ccdc19 ENSRNOG00000008492 ENSRNOT00000011450 1 1 1 80 13 90917244 90919340 GGTCAGAGAACTCATTGTTCC 59 90919382 90919400 TTGATCCGCTCAAACTCCT 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 3 2 2 81 3 51605330 51606645 TGGTACACTCTTTGTTCAGC 58 51605268 51605286 TCGGGAGGATTACTCAACG 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000078514 2 1 3 84 1 217617539 217620373 CCAGAAAGACTATGCCAAAGG 59 217613781 217613799 TTCTTCAAAGGTGGATGCG 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 1 2 5 80 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664247 28730318 CCACATAACCACTTTGTCCT 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 2 2 5 80 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664247 28730319 CCACATAACCACTTTGTCCTC 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000074532 3 1 2 85 20 47225861 47253676 GGGTCAAGACCAATCTTCC 58 47253726 47253744 TAGTTCACTTCGAAGCCAC 58 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343 2 1 2 95 8 96511099 96511118 AAAGGAATGTGGTTGTTCCC 59 96501604 96511047 CTCTTCTTACTTTAGTTCCACTCTG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 3 2 2 88 3 79731783 79733263 GGACTAGCTTAAAGGAAATTGGG 60 79733311 79733329 CAAGGACACAGCCAATGAG 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000026032,ENSRNOT00000050005 2 2 3 80 14 83587894 83589634 AGTGAAAGAGGTCAACCGG 60 83587832 83587850 TTGATCTCCAAGATGCGGT 59 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631 2 1 2 81 1 211559601 211559620 GGATGACACTCACAAGATGG 58 211559664 211560199 GTTGTCAGCAGAGCTTCTC 59 NA Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 3 2 2 81 10 89402947 89403467 GCTATTCTTGGGTGATCAAGTC 59 89401980 89401999 GTCACAACGTCTCCTTTGAC 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172 1 1 2 154 8 128577143 128585820 GCAGGTTTCCTATGTAATTCGA 59 128585935 128587751 ATGGATCTTGCTTGTGCTG 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000033489 3 1 3 83 14 10879808 10879827 TTTGAGGAGGATTCTCGTGG 60 10879871 10884523 TTCCTCTTTAATGCGCTTCTC 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000003072 1 1 3 86 14 10897136 10897154 TTCAGCTTATGCACTGCCT 60 10897203 10902045 TTCTGAGGACCTGTTCTCTG 59 NA Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000084198 2 1 2 90 2 178184173 178197719 AAACCCTTGTGAGATGGAG 57 178197773 178197791 GTCTGAGTCGATCTTCCTG 57 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000064184 2 1 2 80 1 101166909 101166927 CAGGTCTGTCCACAAACAG 58 101166971 101167222 TTGAACTGGGCTTTCTCAG 58 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000076541 2 1 3 80 20 49484682 49484812 ACTCAACTGTACAAGCTGC 58 49484620 49484638 TCATGATCCCAGACGTCTC 59 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 2 2 2 80 10 59753210 59753321 TACATCCAGGAGGAGTTTCTC 59 59753150 59753168 ATGTAAGCTGAAGAAGGCG 58 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 3 2 2 81 3 35784858 35791290 TGGAGAAGTTCATTAATGGTGC 59 35784798 35784816 GACGGGTCAATGAAGTCAG 58 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000087824 2 1 2 97 10 91986235 91986631 TTGGTTGTCGGACTATGCA 59 91984585 91986174 CTGGCCAGACTGGTAATCC 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256 2 1 2 81 12 50288798 50290136 TTATTCAGTACCACAGCAGC 58 50288736 50288754 CTAGTCTCATCTCTGGGCA 58 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 3 2 3 200 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798792 147798810 CTGTTTCGGATGGTACCCT 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 3 3 3 87 5 154391238 154392157 ATTTCTATGTGGTGCTGGGT 59 154391170 154391188 CTGATTCTGTGTTTGGCCC 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 1 3 3 69 10 89286284 89286304 GTTCAACCTCGTCTTTAAGTG 57 89288292 89288310 ATAGTCAGTGTCCAGGACC 58 NA DesignNoJunction Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957 3 1 2 85 10 89237698 89237716 ACCAATAGCCACGATGGAC 60 89239713 89240102 ACCTTGGTTCCTTGGAAGG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000082355,ENSRNOT00000013991 3 2 7 102 16 64025232 64036328 GATACTTGTGCAAGTGCCA 59 64048146 64048164 TTCTGGTAGAGTTCCTCCG 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014268 1 1 7 80 16 64036979 64041402 CTTCTACATGACTTCTAGGAGG 57 64041441 64041461 TCTTTCACAAGGCTATGATCC 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 2 3 3 80 X 23101787 23101806 CTACCCTGAGGAATTTGCAC 59 23097041 23101745 ACCAGATCCTCATAGGACTC 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 3 3 3 80 X 23101789 23101808 CACTACCCTGAGGAATTTGC 59 23097043 23101748 CAGATCCTCATAGGACTCTCC 59 NA Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 2 2 2 81 9 43077781 43078064 ACACGTACACTGACAATCG 58 43078109 43078127 TTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 1 2 2 80 14 84650305 84650329 CTCTATCTCGTGTATAACGTATCTG 59 84647897 84650270 AAACTGAGGTCATCCAAATAGC 59 NA Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078 1 1 2 80 14 84632845 84633034 CTCCACTATTATAACTCAGTGACC 58 84632788 84632809 CAATAGGAAGTGTGAATTCACC 58 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 3 2 2 80 8 119508814 119508832 GAACACTACCCAATGCCAC 59 119507083 119508772 CAACTTCGATCAGTTCTCGAC 59 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213 3 1 2 126 10 89699275 89699486 CTTCTGCAGCAAATCTCCC 59 89698961 89698981 GTGACTGAGATCCTGGAAGAG 60 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477 3 1 2 83 16 59077973 59077991 ACCACATCAGGGATTCCAC 59 59078038 59219558 TGGCTTCAATTTCTGCCAG 59 NA Rattus norvegicus 81 Stxbp4 ENSRNOG00000032768 ENSRNOT00000083009 3 1 2 81 10 78134206 78134386 AAGTTGAGGTGGGAATCTCC 60 78134144 78134163 GACAGCAAATGTTTCCTGGA 59 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000091791 3 1 2 83 8 132135192 132135488 CAGCAGAACAGTGCTTGTC 60 132135533 132135553 GTTTGGTACTCAATCGTGTGG 60 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 3 2 2 85 1 127715293 127721451 CGTCACATAATGAAGTTTACGG 58 127721495 127721515 CTTCTGGCGAATTCTAAACCA 59 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722 1 1 2 83 12 52140765 52142203 ATAGCGACAATGTGGAACTC 58 52140701 52140719 TGTTACGCACAACCTTCAC 59 NA Rattus norvegicus 81 Clcc1 ENSRNOG00000020360 ENSRNOT00000027617 3 1 2 83 2 211460441 211460459 CGATGACTGGATTGACCCA 60 211460506 211467933 TCACAATCATCAACCTGCG 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 3 2 2 80 8 59580250 59580271 TTGCGATATCTCAGTTAGTGGA 59 59582911 59584580 CTATCCATTCCTGCTTCAACC 59 NA Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231 2 1 2 164 12 48284179 48316498 CCGAGGCAGATACAAAGTC 58 48283103 48283121 TTCATGAAGCAGGTGTTCC 58 NA Rattus norvegicus 81 Pate1 ENSRNOG00000049600 ENSRNOT00000073753 1 1 1 60 8 36875577 36875595 CAACAGTAGAAGAGGCCTG 58 36874815 36874833 AACCACATGGTACCATCCT 58 NA DesignNoJunction Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000080649 3 1 5 127 20 4420213 4420231 CAACCGAACTGAGTCTCTG 58 4420455 4420658 GTAGCTGAGACTTCTGTCTC 57 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261 1 1 2 80 2 210748652 210748670 GGACACTTTGGAGAACCAG 58 210748162 210748608 GGGACTCTGCTAAAGTCAG 57 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261 2 1 2 80 2 210748651 210748669 GACACTTTGGAGAACCAGG 58 210748161 210748608 AGGGACTCTGCTAAAGTCAG 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 2 2 4 81 8 39182117 39184017 TTCCGGCTTTCTAAGGGTG 60 39182054 39182072 TGCTCACGATATCGCTGAG 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000092026 1 1 6 80 5 158109539 158109559 ATCAACGACAAGTCTACTGGA 59 158109601 158111035 TGGAACTCTCCACTCACCT 60 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497 1 1 2 92 9 64695898 64754137 ATTCCCAGGGCTTATACCC 59 64777324 64777343 AACAACTGATCTAACTGCGT 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644 2 1 3 80 16 54184384 54187892 CTGGTGGTTTAACAGGTGTC 59 54187933 54187953 CCATTATCGGTTTCTGCTCTG 59 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000073469 1 1 2 80 2 44339294 44339314 AACGACTCTAATTGGAGGAGG 59 44337787 44339252 GTCAATCGGTTTGGCTTCC 60 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 2 1 1 116 2 42727741 42727759 ATATGCTGAGACTGTGGCT 59 42727867 42727887 CCTATGATAGTGATGCAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000077719 3 1 2 82 1 72881331 72881349 TGCCCTCTAAAGTTCTGGC 60 72881393 72882801 CTGAGGACACTCTAGAGATGG 59 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 3 2 2 80 8 62532077 62532095 ACAACTTCCAGCCTTATCC 57 62531056 62532036 TCTCATGTAGAAATCTAAGGGC 58 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225 3 1 2 81 2 211785768 211785787 CTGCAGAGTCAAGACTTCAG 58 211772190 211785720 ACTTGACCTTGAACACAGC 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000081558 3 1 4 84 2 53159929 53159948 AAAGTACAGCGAGTTCAGTG 58 53159567 53159883 GAACTTGGGTCCTTCTTCAC 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 2 3 4 81 2 53166095 53179745 TGAAATAGTGCAACCTGATCC 58 53166034 53166052 GATATCTCCACGGATCCCA 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000057078 2 1 2 95 20 49325081 49325100 CTTCTTGCATCAGCTCAGC 59 49332314 49332332 CTCAACTGCATCCTTGCAC 60 NA Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 3 1 1 61 16 75120352 75120371 TCATTGTAGTTGAACTGCCA 58 75119952 75119972 TGGAAATGACTGGGAATACTC 58 NA DesignNoJunction Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000012915 1 1 2 89 5 61713163 61715430 GGTCTCAGAATGTTCATATTGTGG 60 61713097 61713116 GAACAGGTCAACACAAGCTG 60 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000048858 1 1 3 174 20 155197 155219 CATGGGAATCGATGTTACTTCTG 60 154673 154694 GGACACATCAGAGCTGGAG 60 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 3 2 3 80 3 80718516 80718535 CCTCCTCTTCTTCCTCAGAC 59 80718577 80732041 CACCATTGTCCTCAAAGTCC 59 NA Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 3 2 2 84 16 80915386 80915406 GACATTAGGAGAATTTGGCGT 59 80915452 81054932 TCTCCACACCTTTCTCAGC 59 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025 3 1 2 97 5 155702787 155702808 CCTATTACTCCAGAGACTGCTG 60 155691741 155702732 ACATTCTTTAGGCCTTTCTGTG 59 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000013092,ENSRNOT00000067435 1 3 3 80 5 100474447 100493413 CGAGATCAAGATATGTCTTCTCC 58 100474389 100474410 AGAATCCTGTGGAGATGTAGAG 59 NA Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 1 2 2 114 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528554 75528572 AACAGAGTCGGTAGATGCG 60 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 1 3 3 88 16 69882205 69882225 GAGACTGGTATTACCGTTGGT 60 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435 1 1 2 80 3 155344042 155344060 GGTCCTGAGGTGTATCGTG 60 155344098 155349071 TTGTAGATAACCCTATATGCTCCAG 60 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 1 1 1 60 16 83358446 83358466 ACATCTCTATATGGGACACCG 59 83381221 83381239 CAGTACATGGAGCCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963 2 1 2 81 16 81382498 81434185 GAGGATCAAGATTGGTGAAGC 59 81382437 81382455 GTTCACAGTGCAGTAGCAG 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 2 2 2 80 16 79918973 79924040 TGAGCCAGATGAGTGAAGC 60 79918911 79918929 CCTGAGATTCGACTTCGCT 60 NA Rattus norvegicus 81 AABR07049386.1 ENSRNOG00000054001 ENSRNOT00000080806 1 1 1 60 5 120176309 120176327 GCTCAGTTATCACAGTGCT 58 120176267 120176290 CTTCAGTATTCACAGTACTGTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000053278 ENSRNOT00000079766 1 1 1 60 5 5464378 5464396 AAATGGTCTTCTGCAACCC 58 5464416 5464438 CTCTCCTGTATGTGTTAGTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059772 ENSRNOT00000078697 2 1 1 64 5 72221597 72221615 ACATGTGCATCAGAAGGTG 58 72221551 72221569 CACAGGTCAGAACACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059291 ENSRNOT00000088361 2 1 1 60 5 22830761 22830781 CCAAAGTTGGAAACTTGTCTG 58 22830721 22830742 GAGAACAAATGCATGTCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052755 ENSRNOT00000087104 3 1 1 60 2 85008812 85008830 AGAGAAGATTAGCATGGCC 57 85008770 85008789 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013911.1 ENSRNOG00000049917 ENSRNOT00000071149 1 1 1 68 2 262679215 262679234 TGAGATCTAGCTGTAAGGCA 58 262679166 262679184 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054205 ENSRNOT00000079474 1 1 1 60 2 48414255 48414275 ACATATTGGGACAATACAGGG 58 48414215 48414234 AATTTGCATGTTGTCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044838.1 ENSRNOG00000000650 ENSRNOT00000000807 1 1 1 60 20 23147260 23147278 AGGAGATGCGAATGGAGAC 59 23147299 23147320 TTGTTGGAGAATTTCTCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044838.1 ENSRNOG00000000650 ENSRNOT00000000807 2 1 1 60 20 23147294 23147314 CACAGCCTGTGAGAAATTCTC 59 23147334 23147354 CGTCTCCTTGATCATCTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055618 ENSRNOT00000086883 3 1 1 61 5 89705931 89705949 ATCAGAAGGTGGCAGAGTG 59 89705968 89705992 GATGTTTACAGGTCAGAATACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054228 ENSRNOT00000081832 1 1 1 60 11 83659033 83659054 ATGATACAGAGATTAGCATGCC 58 83659073 83659093 GGAATGCTTCATGAATTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054899 ENSRNOT00000090522 2 1 1 60 11 35158277 35158299 GTCAAAGAGGATAACCTTTCCAG 59 35158314 35158337 CTTGTATACTCTTGACTGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052768 ENSRNOT00000084209 3 1 1 63 11 83854851 83854870 TAACGAAGGTAGTTCTCCCG 59 83854807 83854825 CCCAGTAGTCAGCACATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056394 ENSRNOT00000082360 1 1 1 109 8 80501357 80501375 CTTTCTCCCATTGGACGGT 60 80501266 80501284 AATCTGGCTCTGTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056523 ENSRNOT00000079322 2 1 1 60 8 101915524 101915544 ATACCATGATCATGAGCATGC 59 101915566 101915584 CATATCTGGAGGGCGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056882 ENSRNOT00000079314 1 1 1 60 5 139827988 139828006 GGAACAGAGACGATTAGCA 57 139828028 139828048 CGAATGCTTCACAAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059677 ENSRNOT00000078397 1 1 1 60 8 75827635 75827653 AAAGGAGCACTCGTAAGCA 59 75827677 75827695 AAGCACCTACCTAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053466 ENSRNOT00000084545 2 1 1 60 16 84122209 84122229 GGCTATGTCTATGTTCAGTGG 58 84122250 84122269 AGTGTTCGGATACTGATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058947 ENSRNOT00000078745 1 1 1 60 8 126637212 126637230 GGATGACCTTCCCTAAGGA 58 126637253 126637272 ACATAGCTGTTGTAGACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052471 ENSRNOT00000082689 3 1 1 61 5 39687930 39687954 CTATACAGAGAAGATTATCATGGCC 59 39687972 39687991 CCAGGCTGAATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119603.1 ENSRNOG00000045778 ENSRNOT00000039294 1 1 1 60 2 157854824 157854842 GACGCTATCAGAAGTCCAC 58 157854866 157854902 AAGTCCAGATGCTGAAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055026 ENSRNOT00000085820 3 1 1 63 2 5782550 5782570 CAAAGAAGATTAGAATGGCCC 57 5782507 5782526 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 pRNA ENSRNOG00000051863 ENSRNOT00000087420 3 1 1 61 8 107808380 107808399 GAGACATCACCGAACATGAC 59 107808338 107808359 GACACAGGGATAAACATGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000059745 ENSRNOT00000087097 3 1 1 60 5 8012952 8012973 CTAGAGCAATTGTGGTTACAGC 60 8012913 8012933 AAAGAGTAGCACCTCAGTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059958 ENSRNOT00000090650 3 1 1 60 5 127092193 127092212 CTATGTGTCCTTCCTGAAGC 58 127092235 127092253 GTCTTCTACTCAGGGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060942 ENSRNOT00000083562 2 1 1 60 16 34695202 34695221 GGTAGTCCTTGGTTCATCCT 59 34695161 34695179 AGGCATAAGACAGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000054774 ENSRNOT00000088446 2 1 1 66 8 44991646 44991665 CGCTGTGATGATTGATTCCA 59 44991693 44991712 GAAGGAACTAGCCAACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058798 ENSRNOT00000085777 2 1 1 60 16 21559014 21559034 TGCTCAGTAAATGACTTCCCA 60 21558974 21558995 CTACATCTGTTTAGTCAGGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060954 ENSRNOT00000091276 3 1 1 60 8 17692172 17692191 GTCGTACTGTAGCTGTTGGT 60 17692131 17692150 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052158 ENSRNOT00000089307 3 1 1 60 8 122040921 122040941 CTGTGTCACATGTACATCAGG 59 122040881 122040902 GAACACTGAGTGTAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025284.1 ENSRNOG00000043057 ENSRNOT00000067450 1 1 1 60 16 31553037 31553055 TTCAGCAAGTCTCCTACGA 58 31553079 31553097 CGCCTGATTTCTTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071482.1 ENSRNOG00000031483 ENSRNOT00000043247 1 1 1 60 8 118378176 118378196 CTCAATGAAGTTCAAGCAACC 58 118378216 118378236 TAAGTACGGCAAGAAGATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036855.1 ENSRNOG00000056398 ENSRNOT00000082159 3 1 1 60 X 4286468 4286488 GTTGATGTAACCACCAAAGAG 57 4286504 4286528 GTCTCCAGGAATCATTATCTATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000056950 ENSRNOT00000078012 3 1 1 68 X 26323839 26323857 GTTTACACCCTGACCTGGA 59 26323789 26323807 ATGAGATGGGCATGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000057500 ENSRNOT00000078315 3 1 1 109 6 115337030 115337049 CCTATAGGCATGGCACTAGG 60 115336940 115336961 CCGCAAATTTCAGAGAATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064232.1 ENSRNOG00000053673 ENSRNOT00000085187 3 1 1 60 6 70289622 70289642 AATCCGGAAGAAGATTGAGCA 60 70289664 70289682 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061208 ENSRNOT00000078679 2 1 1 60 9 25144379 25144397 GTGACAAAGTGAGTGGGTG 59 25144337 25144356 CCACATTCAGAGGTTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047373 ENSRNOT00000070769 3 1 1 70 9 32722663 32722681 CTGGCCATACCATCCTGAG 60 32722715 32722733 CTAACCAGAGCTGACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058253 ENSRNOT00000090191 1 1 1 66 X 75529007 75529025 TTATCCATTGCACTCCGGA 59 75528959 75528977 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056006 ENSRNOT00000083035 2 1 1 60 X 44184136 44184160 GTCTGTTATGTCACATGTGTATGAG 60 44184174 44184196 CTAATTTGACATAGCCTCCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055584 ENSRNOT00000080550 2 1 1 60 2 213207904 213207923 ATAGAGGAGGACCGAATAGC 58 213207863 213207882 TTTGGGCAAATCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000060706 ENSRNOT00000078847 1 1 1 60 6 133773687 133773706 GGATCAATGATGACTGTGGG 59 133773726 133773747 CTTGTTGTCATGATCATGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056300 ENSRNOT00000085473 1 1 1 74 X 39345895 39345914 TAGAGGCATTGCAGGTATGG 60 39345840 39345859 AAGCATAGACAATGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053892 ENSRNOT00000086401 1 1 1 69 2 166764118 166764136 TCACATGTGCGTCAGTAGG 60 166764067 166764085 ATTCAGATGCTCACAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057151 ENSRNOT00000081867 2 1 1 64 2 207172375 207172396 GCACCACATAAACTGAAATGAG 58 207172421 207172439 TTTCGTGTCTTCCTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052298.1 ENSRNOG00000056275 ENSRNOT00000084003 3 1 1 81 3 45699293 45699311 TACCTATGAGCCAAGCCAG 59 45699180 45699249 GTGATAGGAGACTCGATCGT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053416 ENSRNOT00000083494 3 1 1 60 2 53555833 53555853 GTATACAAGTAGCTGTGCTCC 58 53555793 53555812 TACAATGGACCTTGAGAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047701 ENSRNOT00000072112 1 1 1 60 6 7157052 7157070 TGGTCTCAGAAGCTAAGCA 58 7157094 7157112 CCACTCTGTTTCTCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000051540 ENSRNOT00000091290 2 1 1 60 17 90065334 90065354 CCCTAGGCCTCTCATAATGTC 60 90065294 90065312 GCTATGCATTGGGCTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057873 ENSRNOT00000082942 3 1 1 73 9 41623003 41623021 AATGCTCCTAGAGGCACTG 59 41623058 41623076 ATAGGCCTAGACTCTGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044473.1 ENSRNOG00000046314 ENSRNOT00000072845 1 1 1 88 20 6945339 6945357 CGGTCGAGATCAAGAAAGG 58 6945411 6945433 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000054153 ENSRNOT00000078912 2 1 1 60 X 70583043 70583062 GCAAGTGTCTCCTTTCTCCT 60 70583085 70583103 GTGCATACACAGCTTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129244.1 ENSRNOG00000045893 ENSRNOT00000071527 3 1 1 61 15 23733357 23733375 TGGACTTGGAGTCAGAAGC 59 23733314 23733332 CACACTCAACCAGTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056682 ENSRNOT00000080329 3 1 1 62 16 41951320 41951343 GAAGAATACAGAGATTAGCACAGC 60 41951281 41951300 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056385 ENSRNOT00000086898 2 1 1 60 3 154846058 154846077 GTCATTGATACTGCAGGGAG 58 154846017 154846035 AGGAGACCTTCCAAACACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059925 ENSRNOT00000088932 1 1 1 60 1 126420210 126420228 CTCCCAAAGTTGTGCACTC 59 126420168 126420188 GGTTGGTCCTCCTCTATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122968.2 ENSRNOG00000055261 ENSRNOT00000081962 2 1 1 99 3 52588347 52588365 CAGAGCAAAGAGCAGAGTG 59 52588428 52600474 TGAGATGATCCTGTTCCGA 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056103 ENSRNOT00000085337 2 1 1 60 X 33746770 33746790 CCATTTGTAGGAGAACAGAGG 58 33746730 33746749 TCACATCTGGTAATGTCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000060333 ENSRNOT00000084476 3 1 1 67 16 51963424 51963444 CATCATAGCTCAACACTGCTC 59 51963377 51963397 CTCCTGTTAGACCATCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041822 ENSRNOT00000063575 2 1 1 60 X 51691504 51691524 CCCTAATCTGATCTGATCCCA 59 51691543 51691564 CCCATCCAAATATTAACCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059305 ENSRNOT00000087271 1 1 1 60 7 80863430 80863450 CTGCTATGTCACATGTTTGTC 58 80863472 80863490 CTGAACACAGACGTAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042015 ENSRNOT00000063768 3 1 1 60 16 50956721 50956740 AACCAGTCTTCACTGATCCT 58 50956762 50956781 CCCATCCAAGTAATAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053024 ENSRNOT00000079755 1 1 1 60 7 118329417 118329440 TTGTCAGAGAAGGTACTATGATCG 60 118329380 118329398 ATCAGCACATCCGAAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053024 ENSRNOT00000079755 3 1 1 64 7 118329416 118329437 TCAGAGAAGGTACTATGATCGT 58 118329373 118329391 TACAGGGATCAGCACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006742.1 ENSRNOG00000036287 ENSRNOT00000054410 1 1 1 76 1 251158483 251158502 GTCTTTGTTGCAATCCTGTG 58 251158541 251158559 TTAACAGCTGAGCCATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063272.2 ENSRNOG00000058265 ENSRNOT00000084079 2 1 1 80 6 25622271 25622290 CAGCTCAAATGGTTCAGAGG 59 25622332 25622352 TTCCCTTTCTCTAGCCTCTC 58 Novel Rattus norvegicus 81 AABR07004993.1 ENSRNOG00000042292 ENSRNOT00000064130 2 1 1 105 1 173347208 173347226 TGAAGAGCTCCTGGAACAG 59 173347294 173347315 AGTGGACCTGTTAGCATGAG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044784 ENSRNOT00000070051 1 1 1 60 6 127776521 127776542 TGACCATCTCTTCTGATCTTGG 60 127776559 127776581 CCCATCCTAATACTAACTAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059286 ENSRNOT00000082240 3 1 1 60 X 23782381 23782400 GTCGTACTGTAGCTGTTGGT 60 23782340 23782359 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000059358 ENSRNOT00000091062 2 1 1 60 X 65279870 65279890 CATGAAGACAAGTGAGAAACC 57 65279830 65279851 CAGGTTTATTCAGGATTGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0791.1 ENSRNOG00000051069 ENSRNOT00000076801 3 1 1 121 5 74821301 74837518 TAGTTCTGTGCATCTGGGT 58 74954393 74954412 TTAGCATCGTCAGAAAGCTG 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000058362 ENSRNOT00000080204 3 1 1 71 16 27270837 27270855 ATGAGGTTTATCCGAGGCG 60 27270784 27270803 ACATGAAGCTACACCTTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055186 ENSRNOT00000088318 1 1 1 60 X 28453857 28453875 GTGGCTGCAAACAGTATCC 59 28453897 28453917 CAAGTTCTCCTAGAGAAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056091 ENSRNOT00000085064 3 1 1 60 X 74936889 74936909 CTATGTCTGTCTATGCTCAGC 58 74936849 74936870 TGTTAGGCTACTAACCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047614 ENSRNOT00000074507 3 1 1 65 X 10497494 10497512 CAGCCATACACCTTGAACG 59 10497447 10497465 TCCAAGTACTAACAGGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000057600 ENSRNOT00000083602 1 1 1 60 3 4918901 4918920 AAGGGTAAAGGAAGTCTCCA 58 4918943 4918961 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067743.1 ENSRNOG00000056312 ENSRNOT00000081493 3 1 1 65 9 60496705 60496723 AACATGTCCTTGCCCTCTC 60 60496751 60496770 TATCATGTCAGTGCCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051738 ENSRNOT00000077769 2 1 1 77 8 65307984 65308003 TAGAGACTTTGCAGGTGTGG 60 65308043 65308061 ACTGTAGCCATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054337 ENSRNOT00000078164 3 1 1 60 10 53921313 53921333 CTGCTCAGTCAAAGAAGACAG 59 53921353 53921373 ATACCCTTGGCAGAAGATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052280 ENSRNOT00000090563 2 1 1 63 9 28372405 28372428 CCTGATTTGGCATGAGATATACTC 59 28372365 28372385 GTGGATGGACTCTACCATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036194 ENSRNOT00000054317 1 1 1 60 8 27933605 27933623 CTTGGAAGCTAAGCAGGGT 60 27933563 27933581 CAGCACTTGGTATTCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD70 ENSRNOG00000051367 ENSRNOT00000085368 3 1 1 60 9 66501670 66501690 TGATGCATCTTACTGGAACTG 58 66501712 66501730 GTCTCAGTGGTAGTGACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000056450 ENSRNOT00000091995 1 1 1 60 3 46824618 46824637 ATCACATCCTGATAACGGCT 59 46824577 46824595 GACCAGCAGATCCTTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135389.1 ENSRNOG00000042940 ENSRNOT00000065156 1 1 1 60 8 61604283 61604302 AGTTTGGTTTCATTGTGCTG 58 61604325 61604343 CGTCTTGCTTCTTCATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 1 1 1 109 8 72904156 72904174 TTCTGTCTGTCCTGCTTCC 59 72904247 72904267 CCTGGGAGGACTGTTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048308.2 ENSRNOG00000052929 ENSRNOT00000080570 2 1 1 80 5 71786713 71786734 TAGTCATGTATGTTGTTGACGC 59 71786649 71786672 ACAGAGTAACAGCTGTGGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051871 ENSRNOT00000088373 1 1 1 60 2 112788089 112788109 GTAACATGTGCATCAGTAGGT 58 112788128 112788149 AATCAGAACACTGAGTGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031767.1 ENSRNOG00000053112 ENSRNOT00000088278 1 1 1 102 18 33444375 33444398 GTGCAAAGGATCTGTTCTATAAGG 60 33444460 33444478 GAGTCGAAGAAGTGGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057665 ENSRNOT00000084948 1 1 1 60 6 99820940 99820958 AGAGGAGATTAACGTGGCC 59 99820982 99821000 AATATGGAAGCCACACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059751 ENSRNOT00000090091 1 1 1 60 10 24938132 24938151 GGTGAGTTGAGGAAAGACAG 58 24938091 24938111 CCCACCTTTCTGAATGATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056614 ENSRNOT00000078905 2 1 1 80 6 117499485 117499503 CAGTGTTCACCAGAGGAGG 60 117499545 117499565 AGTTGAGTTTCCTATTCCGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061606 ENSRNOT00000078146 3 1 1 61 4 167223412 167223432 CAAGAGCCCTAGAAGTTACTG 58 167223455 167223473 ATTCATGTGTCATCCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061400 ENSRNOT00000082361 1 1 1 60 10 56507209 56507227 TGGCTAAGATCAAGTGCAG 58 56507167 56507185 GACAACCAGAGTTTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059755 ENSRNOT00000087039 2 1 1 60 4 71164780 71164801 AATACAGAGATGATTAGCACGG 58 71164819 71164840 GAACACTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044438 ENSRNOT00000069705 2 1 1 60 12 52217411 52217432 GGTCTTATCTGATCTCAGAACC 58 52217372 52217394 TATTCCCATAGAATCTCCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000055839 ENSRNOT00000085920 2 1 1 62 2 240582721 240582742 AGACAGGTAAAGGAACTTTCCA 59 240582680 240582698 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC140988.1 ENSRNOG00000032900 ENSRNOT00000051579 3 1 1 60 3 82971401 82971419 GTCTTCGAGGAATAGCACG 58 82971442 82971461 AGTGCATAGACACTGGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061125 ENSRNOT00000088230 1 1 1 60 4 177070708 177070727 TTCGGTCAAGGGTATACGAG 59 177070667 177070685 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055516 ENSRNOT00000091940 2 1 1 60 10 95459212 95459232 CATGGTTTGGATTTATGGCAG 58 95459172 95459195 TTCTAACACAGGACACTATGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055516 ENSRNOT00000091940 3 1 1 60 10 95459211 95459231 ATGGTTTGGATTTATGGCAGG 59 95459171 95459193 GTTCTAACACAGGACACTATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057331 ENSRNOT00000079228 1 1 1 60 9 9954426 9954444 ATTGCACTCTGGATGTGCT 60 9954384 9954402 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053799 ENSRNOT00000083306 2 1 1 60 6 59461288 59461309 CTATCTGATGCCTCCTCTATCC 59 59461249 59461268 GCAAGCTCCTATTCCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027496.1 ENSRNOG00000021752 ENSRNOT00000039482 3 1 1 95 17 34225082 34225100 GTCATGGAGGTTGGAATGC 59 34225004 34225024 TAAGGCACATTTGATGGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058504 ENSRNOT00000091658 1 1 1 60 10 57329904 57329925 AACAATGCAGAGATTAGCATGG 60 57329945 57329964 GGAAGCTGCATGAATTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.1 ENSRNOG00000027511 ENSRNOT00000000260 3 1 1 60 10 76313004 76313022 GTTGTGATCGCCATGTCTG 59 76312962 76312980 GGGCTTCTTCTACCACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057478 ENSRNOT00000082629 1 1 1 60 12 40723539 40723559 CAGGGTGAGGATTATTCATGG 58 40723499 40723519 CCACACTTGGCTAATTACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056361 ENSRNOT00000077488 2 1 1 60 12 26889719 26889737 ACCAGCAGATGATCTTCCC 59 26889677 26889697 TCTCTGCTTTACCCTTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362027 ENSRNOG00000032825 ENSRNOT00000042688 3 1 1 60 10 38024617 38024635 ACATTGAATTGGGCACAGC 59 38024575 38024593 TCAATGATAGCCAGTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061313.1 ENSRNOG00000060883 ENSRNOT00000090571 1 1 1 122 4 116109615 116109633 CACTCATCCTTTGGCACAG 59 116107175 116107193 TAAGTAGGCAGCAACTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0645.2 ENSRNOG00000051275 ENSRNOT00000076719 3 1 1 60 X 63537995 63538016 TTAGGTAGCAAAGCATAAGTCG 59 63537956 63537975 CACATAAAGCTCAACACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065776.1 ENSRNOG00000006321 ENSRNOT00000008286 2 1 1 83 6 140934816 140934836 AGACCTAAGCAAACTACAGAC 58 140934878 140934902 AATTTCTTCCCGTCTTCTATCC 58 Novel Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 2 1 2 69 2 52609167 52609185 GACTCAGAGGAAGCCAGAC 60 52591315 52609135 CTTCCTCTGAGTCCCATTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005618.1 ENSRNOG00000061844 ENSRNOT00000084389 1 1 1 80 1 190369042 190369060 GGCTGAGAAGATTCCAGTC 58 190368901 190368999 CGAAACCATTGTCTATCCCA 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060631 ENSRNOT00000080432 1 1 1 60 1 147139457 147139478 GAATGATACAGATTGGCATGAC 58 147139418 147139437 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000059726 ENSRNOT00000087701 1 1 1 60 8 62293283 62293304 AAATCTGCTGGTCTTCATTCAC 59 62293244 62293263 TAATCTGGGCACTAACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 1 1 1 69 2 196582607 196582939 AGAAAGAGGAGGAAGAGGAG 58 196582557 196582575 TTCCCTTCATCTTCCTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060238 ENSRNOT00000078722 2 1 1 61 8 126487477 126487495 ATGCCAACCAGAAGTACAC 58 126487434 126487455 CAAATGGTTGAGTTATCCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072773.1 ENSRNOG00000041322 ENSRNOT00000063075 2 1 1 60 2 207559730 207559749 AGAGGCTTAAAGCCCTAAGC 60 207559689 207559707 CAGCTTAGAAAGCAGGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056342 ENSRNOT00000081473 3 1 1 60 2 236773998 236774016 TTATCCATTGCACTCCGGA 59 236774039 236774058 GTCGAGTTTCCCACATTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.6 ENSRNOG00000056989 ENSRNOT00000089167 1 1 1 91 17 43689911 43689929 AGTCTTCTTAGGCAGCAGC 60 43689838 43689856 ATGAGGAGCTCAACAAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051584 ENSRNOT00000089039 3 1 1 62 17 65512848 65512866 GAAGGTCTAAGGCTGGGAC 60 65512804 65512822 ATTCACCTCCCAACTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000051644 ENSRNOT00000089858 3 1 1 60 X 74098294 74098317 GTGTTGTTCTTATATCAGTCAGGG 59 74098257 74098278 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052922 ENSRNOT00000082720 1 1 1 60 2 73246961 73246981 CGATGATCATTCCCATTAGGT 58 73247003 73247021 TTCCCAACAGGTTAAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041779.2 ENSRNOG00000056851 ENSRNOT00000081147 1 1 1 80 X 139781901 139782283 CGTCAGGTTACTAGGTATTCAG 58 139782321 139782342 TGTAGTAAACTGATGCTGAACC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051803 ENSRNOT00000089130 3 1 1 60 17 62530688 62530707 ATATTGAGGCCTCCTATGGC 59 62530647 62530665 TCTGGAAACTCACCTCCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000054687 ENSRNOT00000085256 1 1 1 60 12 30197046 30197069 GCAGAAACTAGGATTATGTCTTGG 60 30197082 30197106 CTGAGCTAAGAATACTCTACTAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043421.1 ENSRNOG00000046533 ENSRNOT00000072378 3 1 1 60 19 28220652 28220672 TCCTGAAGAACGAATGAATGG 59 28220784 28220805 CACATCTTCAGAGGTGTAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970,ENSRNOT00000078786 1 2 4 88 19 17397468 17399493 ATATAGAGGATGACGTTTCTTCCC 60 17396114 17396132 AGGCCAGTACACTTTGTCC 60 Novel Rattus norvegicus 81 SNORA23 ENSRNOG00000057923 ENSRNOT00000087551 2 1 1 60 1 174684277 174684298 TTGTCATCTATGTCTGGTAGCA 59 174684316 174684337 GTGGATAGCAAGATCTGAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1408.2 ENSRNOG00000054935 ENSRNOT00000086833 3 1 1 62 7 142943831 142943849 CTGAGAGGCTCTCAATGCT 59 142943875 142943893 CTCACTTGTTCTGAGCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 1 2 3 72 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386148 121386166 CTTCTGTCCAGACTCTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076368 1 1 3 60 2 121357876 121390081 GAGTCCTCATGGATCCACAG 60 121390104 121390122 AAGTGTTGTCTGGTGGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061462.1 ENSRNOG00000056316 ENSRNOT00000083740 3 1 1 82 4 126509355 126509375 CATTATCATGGGTTTCCTCCC 59 126509419 126509439 CCTTGAGACCAGAAACCAG 58 Novel Rattus norvegicus 81 LOC367830 ENSRNOG00000042530 ENSRNOT00000017923 2 1 1 125 X 63066397 63109657 GAAGTTCCTGAGGACCCAG 59 63115117 63115135 ATTCGCCTGAATTGCAGTG 59 Novel Rattus norvegicus 81 SNORA26 ENSRNOG00000051369 ENSRNOT00000077431 2 1 1 60 3 4915936 4915954 AGGGTAAAGGAAGTCTCCA 57 4915978 4915996 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060890 ENSRNOT00000081694 1 1 1 60 14 45812497 45812516 GGTGGCAGAAATGACAAAGG 60 45812456 45812476 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029938.2 ENSRNOG00000057597 ENSRNOT00000081750 1 1 1 80 10 60625969 60625987 GCCTATGACCGCTTATGTG 59 60625896 60625924 CAGAAGTAACACTAGACTACAGAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061894 ENSRNOT00000091874 2 1 1 60 2 102458347 102458365 CCTAGAAGCATTGCAGCAC 59 102458305 102458326 GACATTACTTCTTCTCTGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108588.1 ENSRNOG00000058408 ENSRNOT00000088163 2 1 1 80 10 12715385 12715410 AAATCATAGAGGACTTCCCTAACC 60 12715444 12715467 CCAATCTATTTGGAGTTCTGTAGG 59 Novel Rattus norvegicus 81 AABR07004960.1 ENSRNOG00000053648 ENSRNOT00000090018 3 1 1 60 1 172823127 172823148 CTGAAGTCATTCCAGCAATCTC 60 172823166 172823187 GCGATGATAAACACAGTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fendrr ENSRNOG00000051160 ENSRNOT00000076265 2 1 1 84 19 52996950 52996968 CCTAAAGGAAGAGGCCTGG 60 52995547 52995565 GTGTGGGAAATGGAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005758.2 ENSRNOG00000060297 ENSRNOT00000083692 3 1 1 76 1 196471625 196471644 CCTGAGCCATTGATATTGGA 58 196471568 196471586 GGTGAAAGACATCTGAGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004022.1 ENSRNOG00000045763 ENSRNOT00000071788 3 1 1 60 1 122662198 122662216 AGCTCTAAGCTGGATCCAG 59 122662156 122662176 CCTTCTCTATTGAGCAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060124 ENSRNOT00000085913 2 1 1 60 2 47092403 47092421 AGAGACTTTGACAGCCCAG 59 47092361 47092382 CATATAGGAGAACTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076124 1 1 2 95 4 32379361 32379380 AAATGACAAGACTGATCGGT 57 32336628 32379303 TTCTCAGCAGCAATATCCC 57 Novel Rattus norvegicus 81 AABR07040782.1 ENSRNOG00000011067 ENSRNOT00000014702 2 1 1 102 X 110178221 110178245 GAATTACCTTCAGAATTACAGGGAG 59 110178142 110178161 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073485.1 ENSRNOG00000019107 ENSRNOT00000025907 1 1 1 60 9 66712841 66712860 ATTTGACAAAGCTGCTGAGG 59 66712800 66712819 CATCTCTTCATCCATTGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010787.1 ENSRNOG00000053939 ENSRNOT00000079146 3 1 1 88 2 151684436 151684455 ACCTATTCCTAAACCCAGGC 59 151684366 151684386 CGAGCCTCTTATACCTTCCC 60 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056,ENSRNOT00000071395 2 2 2 98 5 77314735 77314756 ATCTGAGTTCAGACATCAAGGA 59 77314489 77314676 GACAGCGATCAGTCTTGGT 60 Novel Rattus norvegicus 81 SNORD88 ENSRNOG00000060695 ENSRNOT00000088583 2 1 1 61 1 100224544 100224562 CCTGTGATGTTCAGCACTG 59 100224587 100224605 CAAAGGTCCTGGGTAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016950.2 ENSRNOG00000056911 ENSRNOT00000082029 1 1 1 80 15 5428507 5428526 GTTTGTGAACTGCAAGTTCC 58 5428444 5428467 TTTCTTGGGTCTTTCTGATAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000052342 ENSRNOT00000082488 1 1 1 60 14 32821248 32821270 GATACAGAGAAGATTAGCATGGC 59 32821210 32821229 GGAAGCCTCACGAATTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0635.2 ENSRNOG00000051341 ENSRNOT00000076867 1 1 1 60 X 62820653 62820673 AAGACTTGCCATTCTATGACC 58 62820695 62820713 TTCCTGTAGCCACAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050622 ENSRNOT00000071073 3 1 1 60 17 53714745 53714763 AGCTACGTAGGATCAAGCC 59 53714783 53714805 ACCAGATATTCACTGGTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040494.1 ENSRNOG00000058719 ENSRNOT00000082854 3 1 1 81 X 102509862 102509906 AAGCTGGATGTATAAGAAGGAC 58 102509787 102509805 TTCCATGATGACAAAGGCT 57 Novel Rattus norvegicus 81 AC103129.2 ENSRNOG00000053541 ENSRNOT00000081766 1 1 1 80 7 140142113 140142131 AAGCCTTACTACACAGGCA 59 140139490 140142069 AACGAGTGGTATGAGCCTG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000060891 ENSRNOT00000090304 2 1 1 60 14 23597255 23597275 TTAGCCTAGATGTGTTAACCC 57 23597215 23597234 AGTCAGTTTCCCACATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Eif6-ps1 ENSRNOG00000058513 ENSRNOT00000083783 2 1 1 60 14 86979986 86980004 CGTCGTTCGAGAACAACTG 59 86979944 86979963 AGGGAGTAGGTGTTAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054873 ENSRNOT00000082543 1 1 1 60 12 33875885 33875906 CCAAATCGGGAAATAGACAGAG 59 33875927 33875945 AATTTGCATGCCATCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053461 ENSRNOT00000091604 2 1 1 60 12 44052250 44052271 TGCGATACAGAAGAGATTAGCA 60 44052292 44052310 ACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000061089 ENSRNOT00000088081 1 1 1 60 2 153673393 153673414 TGGTTCTTCCTGAAAGAATCTG 58 153673432 153673453 TATGTATGAAGACATTGCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048387 ENSRNOT00000074592 2 1 1 60 17 53916383 53916402 TGAACACATCCCATCTTGTC 58 53916422 53916443 AAGTAATAACCAGGCTTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096804.1 ENSRNOG00000041549 ENSRNOT00000063302 3 1 1 61 17 80895495 80895517 TACATAAGGACACTGGAAGAAGG 60 80895538 80895556 GTCCCACAAGGCAGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057962 ENSRNOT00000082737 3 1 1 60 14 31648839 31648857 CTTCTGTGTCACAGGTGTG 58 31648797 31648816 ACATAGACAGACACAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051807 ENSRNOT00000090392 2 1 1 76 12 695177 695195 AGTGAGGCTGCTATGTCAC 60 695119 695137 GGCTACACCGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048653.1 ENSRNOG00000047928 ENSRNOT00000073640 3 1 1 61 5 86870028 86870048 GAAAGCCAAATTAGGTGACAC 58 86869987 86870005 AGGTTCTGTCCAGATCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051665 ENSRNOT00000079693 1 1 1 60 3 51875171 51875190 ACATGTGCATCCATAGATGG 58 51875130 51875151 GGTCAGCATCTTGAATGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD12 ENSRNOG00000056200 ENSRNOT00000085589 1 1 1 60 3 163815550 163815569 GCTGGTGTAAATGATGACCT 58 163815590 163815610 TTTAAGACATCAGCACTGTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058965 ENSRNOT00000088186 3 1 1 60 1 239841698 239841717 TATGAGTCAGTAGGTGGCAG 59 239841657 239841678 TCATAGGTCAGAACATTGAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058423.1 ENSRNOG00000058042 ENSRNOT00000091186 1 1 1 141 7 115946623 115946641 TTTCCTGAAGAACGGAAGC 58 115946746 115946765 ATGGGAAGGAGTTCCTAGC 59 Novel Rattus norvegicus 81 SNORA73 ENSRNOG00000053880 ENSRNOT00000088346 2 1 1 60 1 6440083 6440103 CAGGATCTGTCCTAGTAAAGG 57 6440125 6440143 CTGTAAACAAGGTTGGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055664 ENSRNOT00000083486 2 1 1 60 14 75953651 75953673 AGAGGTTATGTCTACAGTCAGTG 59 75953688 75953711 GCTAGGTTACTAATCATTCAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035957 ENSRNOT00000054080 2 1 1 60 1 199087171 199087189 TGAAGCTAAGCAGGGTGAG 59 199087213 199087231 CCGGTATTCCCAGGTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035957 ENSRNOT00000054080 3 1 1 60 1 199087155 199087176 CATCTCATCTGATCTCTGAAGC 59 199087192 199087215 GTCTCCCATCTAAATACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060705 ENSRNOT00000090931 3 1 1 63 1 213992503 213992521 ATCCTAATCCCTGCTGGTC 59 213992548 213992566 CTAGGATGCTCTGGTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058031 ENSRNOT00000081602 1 1 1 60 1 173139665 173139684 TTTGGTCAAGGGTATACGAG 57 173139707 173139725 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.2 ENSRNOG00000052593 ENSRNOT00000082798 2 1 1 91 17 43632745 43632763 TCTCAGTCTTCTTGGGCAG 59 43632672 43632690 GGAACTCAACAAGCTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054509 ENSRNOT00000077872 1 1 1 60 1 148033343 148033364 GAATGATACAGAGAAGATTGGC 57 148033384 148033403 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048135 ENSRNOT00000053353 1 1 1 60 1 264649143 264649161 CGATCTCGTCTGATCTTGG 58 264649183 264649203 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128154.1 ENSRNOG00000060588 ENSRNOT00000090067 2 1 1 80 10 46484159 46497606 GTCTGCTCTTCTGAAATTGGG 59 46484099 46484118 TCAAAGGAAAGTGCAGAACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058640 ENSRNOT00000089681 2 1 1 60 1 184495655 184495676 GACGGAATTCTTCAATCAAGAG 58 184495693 184495715 CTATGATGGTTATTCCAGGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056383 ENSRNOT00000078246 2 1 1 65 1 30150400 30150419 CAATGAGGTTTATCCGAGGC 59 30150354 30150375 CATAACAGAAAGATGCTCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055268 ENSRNOT00000078933 2 1 1 60 6 91633118 91633139 GAGCAGTGTTATTTCTTACGTG 58 91633079 91633100 GCAGTTACTCTGCTAATTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000061306 ENSRNOT00000082268 3 1 1 60 2 550734 550752 ATGGACACTATGAACGCAC 58 550775 550794 CTCTCAGATAGCTGTAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044605 ENSRNOT00000069872 3 1 1 60 1 161836645 161836668 CATGATATACCATCCTGAACATGC 60 161836608 161836627 CCCAACCCTTCTTAGTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048698.1 ENSRNOG00000061625 ENSRNOT00000072346 1 1 1 80 5 88657213 88657235 AGATTTCACCTCACATGCG 58 88657151 88657170 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 LOC100360491 ENSRNOG00000006283 ENSRNOT00000008276 2 1 1 80 8 6749877 6749895 ACTTTAAGGCTTTCGCCAG 59 6749814 6749832 CTTCTTTCGCCCTCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056100 ENSRNOT00000081079 2 1 1 90 2 124592191 124592209 CTTAGAGGCATTGCAGGTG 59 124592119 124592138 AACACTGAGCAGAGACAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055881 ENSRNOT00000091833 2 1 1 60 1 115333983 115334001 GTCCTAGAAGCTTTGCAGG 58 115334023 115334043 CTCTTTGCCATCAAATGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055558 ENSRNOT00000083447 1 1 1 75 2 264595674 264595692 GTGCTTACTTCAGCAACAC 57 264595731 264595749 TATCATCTTTGCTCACGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014426.1 ENSRNOG00000053903 ENSRNOT00000083237 3 1 1 80 14 15461572 15461590 CAATTGCCTCCAGCATCTC 59 15460745 15461528 GTCATCAGGGACCCTAGGA 60 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000052538 ENSRNOT00000090677 3 1 1 61 1 116744567 116744588 GACAACAGAAAGTCAAGAACAG 58 116744527 116744546 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015596.1 ENSRNOG00000048944 ENSRNOT00000071542 2 1 1 60 14 65152762 65152780 TGCCTATGACTACTCCGTG 59 65152720 65152738 GGCTCCAGTCACATTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061029 ENSRNOT00000078858 3 1 1 65 14 18972547 18972571 GAACAACACAGAGAAGATTAGTCTG 60 18972592 18972612 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006619.1 ENSRNOG00000050486 ENSRNOT00000071075 1 1 1 214 1 242809206 242809224 CATCGAGAGCATCATGCAG 59 242809006 242809024 AGTGATGCTCTTCCTGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC106947.2 ENSRNOG00000060070 ENSRNOT00000079475 3 1 1 81 1 168098044 168098062 ATTGCTTTAGCCTCCATGC 59 168097980 168097999 GCACTAGCAAGAAGTCAGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057242 ENSRNOT00000079970 1 1 1 60 1 58787420 58787438 GAGAAGATTAGCATGGCCC 58 58787462 58787480 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD107 ENSRNOG00000058701 ENSRNOT00000081554 3 1 1 62 1 195072351 195072369 TGACATGGGACCTTGTCTG 59 195072307 195072329 GATTTCAGAGTCACTCTAAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012012.1 ENSRNOG00000053134 ENSRNOT00000075009 3 1 1 85 2 182113785 182113803 TCTTCCAGCTCTTTAGGCA 58 182113714 182113736 CTGGCTTAGTGAAGAGGCT 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059226 ENSRNOT00000077834 2 1 1 60 1 282379435 282379453 TCCAAGGATAGAGCTGGGT 60 282379393 282379412 TCTCCAATTACTCTGGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061743 ENSRNOT00000090628 3 1 1 60 1 113937973 113937994 ATACAGAGAAGATTAGCATGGC 58 113938014 113938033 GGCATGCTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054261 ENSRNOT00000091871 1 1 1 60 4 17910526 17910544 ATCGGTCTTTGGTCAAGGG 60 17910566 17910586 CTTGTTTGGAGGTTCTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044767 ENSRNOT00000070034 2 1 1 60 4 125508150 125508169 GATCTCAGAAGCTAAGCAGG 58 125508109 125508128 TACTCCTTCATTCTCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000053589 ENSRNOT00000077827 3 1 1 60 10 66596116 66596134 CACTGTTGTCAGTGTCCAG 58 66596155 66596176 ATTTCCTGTGATAGAAGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061491 ENSRNOT00000084575 2 1 1 74 4 66286622 66286640 ATGGTGCTCACTCATACAC 57 66286566 66286584 TTGCATGTCCTCTTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC239813.1 ENSRNOG00000053042 ENSRNOT00000077708 2 1 1 80 Y 214666 215147 GAGGATGATGTAGGAGAAACTG 58 215186 215206 ACTCTGATCAATGACTTCAGC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061866 ENSRNOT00000084887 3 1 1 60 2 260066837 260066855 TCACATGGACGTCAGTAGG 59 260066879 260066897 AGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056602 ENSRNOT00000077130 1 1 1 60 1 234591797 234591815 CCCAATTTCTCCCTCACTG 58 234591838 234591857 TCTTCAGTGGAGTACACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128960.2 ENSRNOG00000057958 ENSRNOT00000085104 3 1 1 142 17 78911821 78911839 ATTGTGGGAGTCACACTCC 59 78911944 78912000 AAATCCACTGAAGGTCGAGG 60 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000061593 ENSRNOT00000081154 1 1 1 60 1 58335064 58335085 AGTTATAGGATAAAGGGCTGAC 57 58335105 58335124 CTTTCTTCCAAGTTGCTACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057801 ENSRNOT00000081166 1 1 1 80 2 30580276 30580294 CTGAGGCACGATTACTGCT 60 30580214 30580233 TTGGATGCTAAAGAATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059864 ENSRNOT00000087676 3 1 1 61 1 48643754 48643772 GAGGCTACGTCTACCTAGG 58 48643711 48643729 TCCACCACTAGTCACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057383 ENSRNOT00000084124 1 1 1 60 14 108524860 108524878 AGGCTTAGCCACTGTACTC 59 108524818 108524838 GATTCTCCCATATCTGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036487.1 ENSRNOG00000047830 ENSRNOT00000070891 3 1 1 60 12 44686301 44686319 TGTTAAGAGACTGCTCGGA 58 44686259 44686279 CTAAGTGCTGAGATTACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055144 ENSRNOT00000089647 1 1 1 60 14 82322595 82322615 ACGATACAGGGATTAGCATGG 60 82322635 82322655 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059557 ENSRNOT00000086555 2 1 1 60 5 68338911 68338930 ATAAGTTGCAGAGATGGGAG 57 68338870 68338890 CTGATCACTCAGATCAGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014478.1 ENSRNOG00000043813 ENSRNOT00000069080 1 1 1 60 14 16802955 16802975 GCCATATCTGACGTTCAACAC 60 16802996 16803015 GAGGCAAATCCTCCCTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053636 ENSRNOT00000083206 1 1 1 60 14 115409138 115409157 GAAGAGGATGACCTTCCCTG 60 115409177 115409198 CTACTCATATACCCTTGACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032265.1 ENSRNOG00000059754 ENSRNOT00000088527 2 1 1 92 18 58097188 58097208 TTTGGTCAAGGAAATCAACCC 59 58096361 58097134 TGAGCCTAGAGCTTGTCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052090 ENSRNOT00000089302 3 1 1 60 3 52704704 52704723 ACAAAGAAGATGGCATTCCC 59 52704744 52704764 TCCTTTAACCTAAGACCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055066 ENSRNOT00000083524 3 1 1 60 3 113086312 113086333 TGTGCTAACATTGGAATGACAC 60 113086273 113086291 TCATGTCATCCTTGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054464 ENSRNOT00000081664 1 1 1 61 5 52582802 52582820 AGAGAAATTAGCATGGCCC 58 52582845 52582863 CAGCTAATGTCCTGTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060039 ENSRNOT00000082222 1 1 1 60 14 84619510 84619529 GAGTTGGAATAGGAGCTTGC 59 84619469 84619488 GGAGATACTGCAATACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061060 ENSRNOT00000082515 3 1 1 60 3 120039598 120039620 GAGGAACAATCTTTAGTCAAGGG 59 120039560 120039582 GTTTAGAGGTTCAAGAGATCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012467.1 ENSRNOG00000060494 ENSRNOT00000075272 3 1 1 60 2 195486485 195486504 ATCCTGTGTTGTAAGGTGTC 58 195486444 195486462 TCATGTTATGTCCAGGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032821.1 ENSRNOG00000013622 ENSRNOT00000018214 2 1 1 106 18 84444050 84444070 TCCACAGACACTTGAAGACTC 60 84443895 84443982 GATTGCAAGCTCAGCTGTG 60 Novel Rattus norvegicus 81 U4 ENSRNOG00000056709 ENSRNOT00000090484 1 1 1 60 3 155054497 155054515 GGGCGGTTATTGCTAACTG 59 155054455 155054474 TGTATTTCAAGCCGTCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017639.2 ENSRNOG00000055238 ENSRNOT00000078176 2 1 1 60 15 29547993 29548011 TGGAAGACTGACATCCACG 59 29547951 29547969 GGAGGAGATGTGCAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053423 ENSRNOT00000071507 3 1 1 60 13 34148838 34148856 GGAGGAATGGGACTGTCTG 60 34148880 34148898 GTCCCACATGACATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060575 ENSRNOT00000080664 3 1 1 60 12 6108546 6108566 CATATACACAGAGCTGCACTC 59 6108506 6108525 AGAACGTATTCTGAGCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036163 ENSRNOT00000054286 1 1 1 60 12 9651859 9651877 GAGCTCATTTGCTCTTGTG 57 9651899 9651919 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051549 ENSRNOT00000086347 2 1 1 60 12 25779618 25779639 CACTAAGATTGGAACAACACAG 58 25779657 25779678 AATATGAGTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 2 1 1 60 1 20332054 20332074 CCTGTCCTAATAAGAACTGGG 58 20332013 20332032 CTATGTCTCCTGCTTCCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013073.1 ENSRNOG00000048332 ENSRNOT00000073342 3 1 1 60 2 221659045 221659063 TTCTTTGGGACACTTCTCC 57 221659086 221659105 TTTGAGACTCATCCCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061868.1 ENSRNOG00000037266 ENSRNOT00000056335 1 1 1 60 4 150030344 150030364 AATTCTGGAGTACCTCACAGC 60 150030304 150030326 GAGATCTTTAGAAGCGTTACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0740.2 ENSRNOG00000051175 ENSRNOT00000076615 2 1 1 80 X 73082070 73086676 TCAGGACCTTGAAAGGTAGAG 59 73082010 73082030 GCTGGATATGACACTGTTTCC 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054690 ENSRNOT00000079238 1 1 1 60 12 7353811 7353829 GGAGTTCTGGGCTGTAGTG 60 7353769 7353789 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054690 ENSRNOT00000079238 3 1 1 61 12 7353811 7353829 GGAGTTCTGGGCTGTAGTG 60 7353768 7353789 ATATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049293 ENSRNOT00000075643 1 1 1 60 12 29014606 29014626 TATCTCAGAAGCTAAGCAGGG 59 29014566 29014586 CTAATACTTCCTGGGTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt2 ENSRNOG00000051905 ENSRNOT00000083039 2 1 1 80 4 45325046 45325064 ATGCCAAGGAAAGGAAAGG 58 45309867 45325002 GCTTTACAGCCTTCCTTCC 59 Novel Rattus norvegicus 81 AABR07060628.1 ENSRNOG00000051748 ENSRNOT00000090943 2 1 1 60 4 87293902 87293922 TCATGTCTAAGTCAGAGTCCC 59 87293944 87293962 CCTCCAGTGAAGAGCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.4 ENSRNOG00000058821 ENSRNOT00000084170 1 1 1 60 4 117767522 117767540 TCTTTCTGCTCCTACTCCT 57 117767480 117767498 GTAGCCACATACTCCTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000052910 ENSRNOT00000090248 1 1 1 60 2 188059523 188059542 GCAAGACTTTGCTGATACAC 58 188059565 188059583 TCCAATAAGGGCTGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059398 ENSRNOT00000084316 1 1 1 60 10 4629574 4629595 TTCAAGGGTATATGAGTAGCTG 57 4629535 4629553 CACTTCTAGAGCTTGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054798 ENSRNOT00000080958 1 1 1 60 1 75508681 75508700 GGTCTTAACATCTGTCACCC 58 75508721 75508741 TTAGCCACCAAGATTAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010575.1 ENSRNOG00000051881 ENSRNOT00000079366 1 1 1 82 2 141078564 141078582 GTTATGTGATGGGAGAGGG 57 141078499 141078519 AAACAAACAAGAGTCTCCCT 57 Novel Rattus norvegicus 81 AABR07058542.1 ENSRNOG00000057768 ENSRNOT00000087720 1 1 1 86 7 123908418 123908735 TATAAAGGGCCCTTCAGCA 58 123908350 123908373 GCCCATTCTGTATATTACTTCCTG 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000053442 ENSRNOT00000089159 3 1 1 60 6 133824030 133824049 ACCAATGATGAGATCTGGTG 57 133824070 133824090 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058651 ENSRNOT00000091774 2 1 1 60 1 163897023 163897041 GACAGGGTATATCTGTGCC 57 163897062 163897083 TCAGGAAATGTTAAGCTTCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056430 ENSRNOT00000090553 1 1 1 60 6 77138527 77138546 CTAGAGGCATAGTGGGTGTG 60 77138486 77138504 CTCTTCTCAGCCACCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056430 ENSRNOT00000090553 3 1 1 62 6 77138486 77138504 GGTAGGTGGCTGAGAAGAG 59 77138442 77138460 TTCAGAAGTTCACGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057695 ENSRNOT00000082465 2 1 1 60 2 153680875 153680896 GAAAGACATTCTTCAGTCAAGG 57 153680836 153680856 TGTTTAGAGGGTTAAGCAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114446.1 ENSRNOG00000059545 ENSRNOT00000001163 1 1 1 153 7 140608449 140608467 AATGGCATGATCCTGAAGC 58 140608609 140608627 TAACTGTAGGGCACCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049347.1 ENSRNOG00000055254 ENSRNOT00000084226 2 1 1 91 5 117948629 117948648 GCCATGTGATTCTCAATCCC 59 117948700 117948724 GAACTGCTGTATCTCATTGGG 59 Novel Rattus norvegicus 81 AABR07017824.2 ENSRNOG00000051728 ENSRNOT00000092182 2 1 1 68 15 31417215 31417233 CTAGGCCTTCACCTGTCTG 60 31417402 31417420 ACTTTGTTTCACCTGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010609.1 ENSRNOG00000051802 ENSRNOT00000089823 3 1 1 114 2 143405791 143405809 GGAATGCCAAATGGCTGAG 60 143405884 143405910 TTTGATCATTCTCACTGGTGTG 59 Novel Rattus norvegicus 81 AABR07067234.1 ENSRNOG00000056702 ENSRNOT00000083699 2 1 1 76 9 35966445 35966464 TAAATGTGATCGCTTCTCGG 58 35966497 35966521 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051348.2 ENSRNOG00000060791 ENSRNOT00000078218 2 1 1 80 3 5305935 5306039 TACTTCACACTGTGGATGTG 58 5306080 5306100 ACTATTTAAGTAGGCCACACC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000057625 ENSRNOT00000078387 2 1 1 60 6 83242297 83242315 ACAAGTAGCTGCACTCCTC 59 83242255 83242275 TACTACCCTACGTTCCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054906 ENSRNOT00000091247 1 1 1 60 1 5740177 5740196 GTCACATGTGCATCAGTAGG 59 5740214 5740237 CAGAACACTAAGTGAAGACATAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056296 ENSRNOT00000091361 3 1 1 60 3 114443807 114443828 GACCATAATCAAGATGATGGCT 58 114443768 114443787 GTCCATCTCAATAGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053336 ENSRNOT00000088400 3 1 1 60 3 60690291 60690309 ACACAGAGAAGGTTAGCCT 58 60690249 60690268 TACCATACAAATTTGCGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052871 ENSRNOT00000084931 3 1 1 60 1 167899405 167899425 TATGATGCTGTGCTACAAGTG 59 167899365 167899387 AGGTAGACATAGCATCTTTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057140 ENSRNOT00000084778 1 1 1 60 1 161893118 161893139 AGGATACAGACAAGATTAGCAC 58 161893079 161893100 GTGCTTTACGAATTCTTGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000060430 ENSRNOT00000086005 1 1 1 60 4 77463141 77463159 CTGGTCCGAAGGTAGTGAG 59 77463099 77463122 GAGTTCAATCTGTAACTGACTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.1 ENSRNOG00000053459 ENSRNOT00000081806 1 1 1 68 15 29246143 29246161 TACTCCTAGGCCTTCACCT 59 29217582 29217600 GTTTCACCTGTTGCTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056634 ENSRNOT00000084542 1 1 1 60 14 33240242 33240264 GGAACGATACAGAGAAGATTAGC 59 33240204 33240222 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057771 ENSRNOT00000091718 1 1 1 62 13 72734479 72734497 AGAGATCAGCCAGCATGAC 60 72734435 72734453 AACGTGTAACACTTCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058210 ENSRNOT00000077410 3 1 1 60 5 144877440 144877458 GGAGGAGCTGCTACTTCAC 60 144877398 144877417 AGCAAAGACATAGTCCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.2 ENSRNOG00000057861 ENSRNOT00000080341 2 1 1 60 14 85277068 85277088 GATGATTCCTCTTCCTGAGTG 58 85277107 85277128 AGTCAGTTTCTTAGAGGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003017.1 ENSRNOG00000040273 ENSRNOT00000013741 1 1 1 60 1 93242189 93242210 AATATCATCCAGGTTACTTCGG 58 93242231 93242249 TGGTTCCTCTTCAAGTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058179 ENSRNOT00000085773 3 1 1 60 5 74897201 74897219 GGAGTTCTGGGCTGTAGTG 60 74897159 74897179 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017804.1 ENSRNOG00000052364 ENSRNOT00000079661 3 1 1 86 15 31209812 31209962 TAATGTTTGGAGGAAGCAATGG 59 31210008 31210027 AGTTCACAGTCAAAGAAGCC 59 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000061124 ENSRNOT00000082915 1 1 1 60 1 116982237 116982258 ACAACAGAAAGTCAAGAACAGG 59 116982198 116982216 TCAGCGTAATCCTATTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tcap ENSRNOG00000060511 ENSRNOT00000085408 3 1 1 80 10 86337743 86337761 CTGAGCTGTCAAGTGTCTG 58 86337805 86337826 CCGGTAGACAGATGAGGTC 59 Novel Rattus norvegicus 81 AABR07068750.1 ENSRNOG00000056482 ENSRNOT00000091931 3 1 1 60 9 117484226 117484244 AGAAAGGCTGGAAGAACAC 58 117484184 117484202 GTACCAGTTTCTGGAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.3 ENSRNOG00000054164 ENSRNOT00000085845 3 1 1 80 X 123822916 123822934 AGTTCGAGAACCAGGACAC 59 123822386 123822875 TCATAAGTGGCTTCACTTTAGC 59 Novel Rattus norvegicus 81 AABR07018058.1 ENSRNOG00000057750 ENSRNOT00000083365 2 1 1 60 15 37711082 37711100 GGAAGGACAGCAATTCCAG 59 37711040 37711063 GAACGGAAGACTAGATAACTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290,ENSRNOT00000031927 3 2 3 94 X 73504771 73504789 GATTGGAGACAACTGCCAG 59 73504847 73505716 ATTAAGCTGTGCCATTGCA 58 Novel Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 2 1 3 74 X 73496701 73496719 AGTATTGAAGCAGAGCGTC 58 73496757 73501442 TTTCTTTACACCACGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000051971 ENSRNOT00000083852 1 1 1 60 13 54153016 54153034 AACACAGAGAAGATCGGCA 59 54152974 54152994 GGACCACTTCATAAATTCGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054161 ENSRNOT00000082510 2 1 1 60 5 27614534 27614553 TGTACCTAGAGGTGTTGCAG 59 27614493 27614511 TCTTGCCACCTACAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056282 ENSRNOT00000077747 1 1 1 60 10 6694371 6694389 GGTTGTCATCTTGCTCCCT 60 6694413 6694431 GACTGACTTCACAGCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058607 ENSRNOT00000089430 2 1 1 60 5 106328530 106328551 CTGTTGTGTTACATGTGTAGGT 59 106328572 106328590 GGAACACTGAGTGTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021736.1 ENSRNOG00000034300 ENSRNOT00000048823 2 1 1 60 13 88782106 88782125 CTGTGGGTTCACATTGTTGG 60 88782145 88782166 ACTTATAGGCAGTAGCAAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034739.1 ENSRNOG00000058590 ENSRNOT00000086514 2 1 1 80 11 86094797 86095951 CAGATTGACTGTCCTAGACCA 59 86095991 86096011 TCAGTCTTGAGCTCTTCAGAG 59 Novel Rattus norvegicus 81 AABR07044405.1 ENSRNOG00000055272 ENSRNOT00000087702 2 1 1 60 20 4808256 4808275 CGTGAAACTGAAGGACAACG 60 4808215 4808233 CTCGAGGACATCGAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059285 ENSRNOT00000085955 2 1 1 62 14 23935955 23935973 CCACGATTACAACGTTGGT 59 23935911 23935929 TTCATTGTACCTGGTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055388 ENSRNOT00000083616 1 1 1 74 3 70717013 70717036 CGGCAGCACATATACTAATATTGG 60 70717069 70717087 ATTTGCGTGTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055388 ENSRNOT00000083616 3 1 1 79 3 70717013 70717036 CGGCAGCACATATACTAATATTGG 60 70717073 70717092 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065498.1 ENSRNOG00000051719 ENSRNOT00000079807 3 1 1 81 6 132131056 132149971 CCAAAGGAACACATTATCCCTC 59 132130996 132131014 GGGAGTTTGTCACCATCCA 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000054253 ENSRNOT00000086818 1 1 1 60 3 119097364 119097386 CTCATCTATTACAGTGTGGATGG 59 119097326 119097345 ACTTATGCCAAGTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059094 ENSRNOT00000088266 3 1 1 60 14 83170411 83170429 ACAGATACTGGCATTGGGA 58 83170369 83170387 TGCATGTCTTCCTTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060610.1 ENSRNOG00000033748 ENSRNOT00000041683 1 1 1 60 4 85215671 85215689 GAGATTGTCAACATTGCCC 57 85215713 85215731 TTCCAGAAAGTTCTCTGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060610.1 ENSRNOG00000033748 ENSRNOT00000041683 2 1 1 60 4 85215672 85215690 AGATTGTCAACATTGCCCG 59 85215713 85215732 GTTCCAGAAAGTTCTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051583 ENSRNOT00000086121 2 1 1 62 13 102768750 102768768 GGCTGCAATATCTGTCACC 59 102768706 102768724 AGGAAGAAAGCCAGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 1 1 1 61 4 103403549 103403568 GCCTGAAGATATTGCAACCT 58 103403091 103403528 TTATCACTGTGGGAGGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005028.1 ENSRNOG00000056820 ENSRNOT00000080423 2 1 1 92 1 175684053 175684071 ATGTGTCCTTCCAAGGACC 59 175683978 175683997 GAAAGGAACACTGAGCAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054895 ENSRNOT00000078377 1 1 1 60 13 82960358 82960381 CGATACAGAGAAGATTATCATGGC 59 82960321 82960341 GAAGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054820 ENSRNOT00000085854 3 1 1 60 3 10783685 10783703 TTGAGTGGGTAAAGGTTGC 58 10783727 10783745 ATTACTTAGGCATCCCGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045510 ENSRNOT00000070777 1 1 1 60 20 37200835 37200853 TAAGCAGGATCAAGCCTGG 60 37200874 37200895 AGAGCACATGGTATTTCTAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ct55 ENSRNOG00000027899 ENSRNOT00000031815 3 1 1 87 X 73525485 73525503 ATTTCCAGATTTCGTGCCA 58 73523165 73525435 TGGTATCATCTTCCAAGAGC 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000052031 ENSRNOT00000088832 3 1 1 60 5 2829045 2829064 TTCGATTGTGTTGCTCTGAC 59 2829004 2829022 AATGGAAAGTGTCAGGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054159 ENSRNOT00000079945 2 1 1 60 15 93623349 93623369 TACAGAGTAGATTAGCATGGC 57 93623309 93623330 TAAGGAAGTCTTCACGAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000058284 ENSRNOT00000081726 1 1 1 60 10 111019057 111019079 ACCTATAAGGATAGATGAGTGGC 59 111019019 111019037 ACTCACTGGACCAAATGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054252 ENSRNOT00000084629 3 1 1 60 5 113399678 113399696 CACTTCTCCACCGAAACCT 60 113399636 113399655 GAGGGCATAGTTTCCAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.3 ENSRNOG00000055942 ENSRNOT00000088542 3 1 1 60 17 14686709 14686728 GATCTTCGACACAGAGAAGG 58 14686668 14686686 TTTCTGATCAGCCTTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051783 ENSRNOT00000091219 3 1 1 88 3 147326053 147326071 TGACTGTGACACCTGTCAC 60 147326123 147326141 CTTTGAGAGGGAGGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055134 ENSRNOT00000085509 1 1 1 60 13 109881241 109881261 GGATGTGAGTGTAATCTTGCT 58 109881282 109881301 CAGAACAAACCCTGTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071874.1 ENSRNOG00000055529 ENSRNOT00000083436 2 1 1 66 1 63456981 63456999 GTAGACATGGGTGAGTTGG 58 63454701 63454719 CACAGTCTTCACTGCACAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000051511 ENSRNOT00000088496 1 1 1 60 5 147585656 147585677 GATTAAGTCAACCAGGAAGGTC 59 147585698 147585716 ATCTGCAACAATTGCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043886 ENSRNOT00000069153 3 1 1 60 13 7160215 7160236 CACCTTGAATATCCCTGTTCTC 59 7160255 7160275 TGAATCAGATCCAATCCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061274 ENSRNOT00000077104 2 1 1 60 13 74169749 74169769 AACTGGAACAATACAGAGCAG 58 74169709 74169727 ACGAATTTGCGTGTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052436 ENSRNOT00000086037 1 1 1 60 13 35558722 35558743 GATACACAGAAGATCAGCATGG 59 35558764 35558782 GAACACTTCACGGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056688.1 ENSRNOG00000043567 ENSRNOT00000068834 3 1 1 66 7 36917681 36917700 GAGGGAAGTATGTCACTGGG 60 36917634 36917652 AATGACACTAGGCCTGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004894.1 ENSRNOG00000028974 ENSRNOT00000047494 2 1 1 90 1 166282440 166282458 ACTAAGAGACCACCTGTCC 58 166282364 166282386 CATCATGGGCAATCACCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060209 ENSRNOT00000090567 1 1 1 60 13 16320237 16320257 TATATGAGTAGCTGTGCTTCC 57 16320278 16320297 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056909 ENSRNOT00000091047 1 1 1 60 19 18783403 18783421 TGGTTGTGACTACTGTGTC 57 18783444 18783463 AGACATAGCCTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050530.1 ENSRNOG00000050867 ENSRNOT00000075406 3 1 1 89 5 168474712 168474731 CGGTCGAGATCAAGAAAGGA 60 168474784 168474807 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054025 ENSRNOT00000082993 3 1 1 60 7 136948371 136948391 GATAGCATGGAGATTAGCCTG 58 136948331 136948350 GGACACTTCACAGAATTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2786.1 ENSRNOG00000051329 ENSRNOT00000076564 1 1 1 97 2 259914260 259914913 AGATGGCACTGAAGATGCA 59 259914972 259914992 TGTATTGTATGTGGAACGGGT 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000056919 ENSRNOT00000077870 3 1 1 60 6 81835445 81835463 TCTCACTCAGGTTGTGCTG 60 81835486 81835505 TTATTCAGTCGAGTTTCCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015002.1 ENSRNOG00000056869 ENSRNOT00000080087 3 1 1 89 14 44556989 44557008 CGGTCGAGATCAAGAAAGGA 60 44557061 44557084 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 AABR07005533.1 ENSRNOG00000020477 ENSRNOT00000027758 2 1 1 60 1 185171557 185171575 TCTTGTACCCTTGGCACAG 60 185171596 185171617 TTTAGAAGGCACAATCTACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056568 ENSRNOT00000088541 2 1 1 60 X 116101888 116101907 CTTGGTTGAAGTTTGTTCCC 58 116101930 116101948 AGCAGGAGGTAAGTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000054644 ENSRNOT00000080954 2 1 1 60 X 125425675 125425694 CATAGTGTCCCGTGCTAGAG 60 125425717 125425735 CTACATACACCGAGGCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052042 ENSRNOT00000084405 1 1 1 60 3 103948412 103948434 CTGTCATCTCATTGATTGTCAGG 60 103948450 103948472 TGGTGAGAGTTAGAAGACATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126292.2 ENSRNOG00000055526 ENSRNOT00000091664 2 1 1 60 5 135687778 135687797 CAGATGAGAATCCACAAGCG 59 135687817 135687838 TCTGCTTAACAATCTCTGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045321.1 ENSRNOG00000046812 ENSRNOT00000073740 3 1 1 65 20 42964159 42964178 TTTGTTAACAGGCTGTCGTG 59 42964112 42964130 GATACCAGGCAAATAGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051895 ENSRNOT00000079952 1 1 1 60 X 135846448 135846466 TTTGGTCCAGGGTATACGA 58 135846490 135846508 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.3 ENSRNOG00000051073 ENSRNOT00000076494 2 1 1 80 X 115601048 115606869 TCAAGATGGGTAATGTCCTG 57 115600987 115601008 AGGACATCAGATCTCATTACAG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000060797 ENSRNOT00000083051 3 1 1 60 18 34023737 34023758 TACAGAGAAGATTAGCATGGTC 58 34023698 34023718 CACAAAGGACACTTACTTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054434 ENSRNOT00000087507 3 1 1 60 19 54528514 54528532 AGCCAGGCTAGACATTCAC 60 54528551 54528574 GTAAAGAACTAGTTCTGGTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035961 ENSRNOT00000054084 3 1 1 60 13 55895727 55895746 AATGTGCCTGATCTCATCTG 58 55895686 55895705 CTAAGTACTAACCAGGCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058879 ENSRNOT00000089412 3 1 1 60 19 56323252 56323270 GGCTCTGTCATTTGTCACC 59 56323293 56323312 CTGGCCAACTTAATCAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043915 ENSRNOT00000069182 1 1 1 60 3 103957871 103957889 GCCTATAGCCATACCACCC 59 103957829 103957851 TACTATCCAGCTTCCAAGATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061852 ENSRNOT00000087946 2 1 1 60 3 109913369 109913391 CGATACAGAGAAGATTAGCATGG 59 109913411 109913429 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061030 ENSRNOT00000088360 1 1 1 60 18 53669661 53669679 CTGCTGTGTAACAGGTGTG 59 53669619 53669637 CTGAGCATAAGCAGAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060510 ENSRNOT00000083721 3 1 1 60 5 127646214 127646235 GATACAGAGATGTTAGCATGGC 59 127646175 127646193 GGAACGCTTCACAAATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034530 ENSRNOT00000052653 3 1 1 60 20 33366702 33366725 CAATCTCATATGATCTCAGAAGCC 59 33366665 33366687 TCTCCCATTCAAGTACTAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055548 ENSRNOT00000077478 3 1 1 60 10 88679254 88679274 GGTCAAGGATAGACAAGTAGC 58 88679214 88679233 CACCTGACCACTTTATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041864 ENSRNOT00000063617 2 1 1 61 18 11640216 11640234 ACCCTGAATGCACCTAGTC 59 11640257 11640277 TTATAACTGGGACCCACTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058713 ENSRNOT00000091074 3 1 1 60 20 13149998 13150020 CAATAAGGAGACGATTAGCATGG 60 13149960 13149981 GAATGCTTCACGAATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056340 ENSRNOT00000084479 2 1 1 67 7 83264178 83264201 TGGTAGGTGTGACTTCTATATCAC 60 83264226 83264245 ACTGGTAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054175 ENSRNOT00000088741 2 1 1 80 X 119599651 119599669 GCTCACTTCAGCAGTACAC 59 119599713 119599731 TAACATGTCATCCTTGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055002 ENSRNOT00000079353 3 1 1 61 4 70860626 70860647 AATACAGAGATGATTAGCACGG 58 70860667 70860687 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054945.1 ENSRNOG00000060485 ENSRNOT00000083781 3 1 1 60 3 174466544 174466563 GAATCCAAGTGTGAGATGGA 57 174466586 174466604 CTTCCTTTGGCTTTGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052788 ENSRNOT00000079768 1 1 1 61 1 2886324 2886342 CAAGTTCAGTTCAGGGCAG 59 2886281 2886299 GTCACTTTCAATGTCCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052788 ENSRNOT00000079768 3 1 1 62 1 2886324 2886342 CAAGTTCAGTTCAGGGCAG 59 2886280 2886298 AGTCACTTTCAATGTCCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109837.1 ENSRNOG00000053934 ENSRNOT00000073331 3 1 1 82 15 110436370 110437193 GGGACCACAGAAATAGCAG 58 110436306 110436324 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057735 ENSRNOT00000086801 2 1 1 71 7 134567406 134567424 GCTTGCTTCAGTAACCCAG 59 134567459 134567477 GTATACACCCTTGTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057735 ENSRNOT00000086801 3 1 1 71 7 134567405 134567423 TGCTTGCTTCAGTAACCCA 60 134567458 134567476 TATACACCCTTGTGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051658 ENSRNOT00000091002 1 1 1 60 9 102542665 102542689 CTGTCACATATTCATCAGTAGATGG 59 102542629 102542647 CAGAGCACTGGGTATAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067649.1 ENSRNOG00000055155 ENSRNOT00000085339 3 1 1 60 9 56455061 56455080 ATGGATGACAGCAATCACTC 58 56455103 56455121 CATCACCCTCTCCAACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057838 ENSRNOT00000082643 1 1 1 60 5 162797880 162797898 CTTATCCATTGCACTCCGG 58 162797922 162797940 TCGAGTTTCCCGAATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000056736 ENSRNOT00000077141 3 1 1 60 10 47471482 47471500 GGTGCTGCTCCTATATCAG 57 47471440 47471460 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095278.1 ENSRNOG00000020749 ENSRNOT00000028152 2 1 1 60 10 89510258 89510276 CAGTGACCATCTTTGTGGC 59 89510299 89510318 CCCATCTTCTTCCAGATGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060621 ENSRNOT00000081836 3 1 1 60 18 2725226 2725248 GATACAGAGAAGATTAGCATGGC 59 2725268 2725286 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039202.1 ENSRNOG00000041435 ENSRNOT00000063188 2 1 1 60 X 71470011 71470032 CCTTGAACTCAAGAGATCTACC 58 71469972 71469991 GTGCATGCCTTTAATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057317 ENSRNOT00000079352 1 1 1 60 18 81593951 81593969 CCTTATCCATGGCAGTCTG 58 81593909 81593927 GAAGTTTCCTGCATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065601.2 ENSRNOG00000053458 ENSRNOT00000081560 1 1 1 130 6 136984864 136984883 GTACTTGTCACAGCTGTCAC 59 136984746 136984766 AGTCAGCCAGAAGACAGTG 59 Novel Rattus norvegicus 81 SNORA16 ENSRNOG00000059814 ENSRNOT00000078280 1 1 1 60 X 62313194 62313212 GTGGTCAAACACAAGTCCC 59 62313234 62313254 TACTGCAAATGGAACCATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054963.1 ENSRNOG00000061850 ENSRNOT00000077751 2 1 1 60 3 175779587 175779606 GAACCAAATCAGCTGTTGGA 59 175779629 175779647 ATCAATGCACAGCTACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052961 ENSRNOT00000085433 3 1 1 62 X 44899703 44899721 GCTGATCCATTGCACTCTG 59 44899745 44899765 CTTGCTGTATCTTGCAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060772 ENSRNOT00000080196 2 1 1 60 4 116931018 116931038 CACATGTTCATCATGGGATGG 60 116931060 116931078 GTCACTGTGCTTAGCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054918 ENSRNOT00000080858 2 1 1 60 6 79057969 79057989 GAACGATACAGAGAAGAAGCA 58 79058011 79058029 ATGCTTCACGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051509 ENSRNOT00000085425 3 1 1 60 X 137025264 137025285 GTATGTTCCTCCTGAAACTGTG 59 137025305 137025324 ACTGGTCTATTCTGGAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.4 ENSRNOG00000060552 ENSRNOT00000090133 3 1 1 107 6 139719186 139719288 ATTTCCAACCTGTGTCCTG 58 139719097 139719115 AGTGAGAACCCAGAGACAG 58 Novel Rattus norvegicus 81 AABR07061345.2 ENSRNOG00000057086 ENSRNOT00000087750 3 1 1 60 4 117757956 117757974 CCTAGTGTCTGGCTCTTGG 60 117757914 117757933 CAGGCAAAGGAGAAAGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034736.1 ENSRNOG00000053527 ENSRNOT00000084433 3 1 1 60 11 85992699 85992718 TATGAGCTGATCCAACCACC 60 85992738 85992759 AAGTGATTGAGACAGTGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000055399 ENSRNOT00000091870 1 1 1 60 7 104532878 104532899 GATGCCAGAAACTCTAAATACC 57 104532839 104532857 ACCTAGGACATGTTGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000054099 ENSRNOT00000086077 1 1 1 75 20 45346661 45346679 ATTCCTACAGTGCTTGCCA 59 45346604 45346624 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000051393 ENSRNOT00000080558 2 1 1 77 7 141587032 141587051 CCTGAGTCCTCATAACTGGT 59 141586974 141586992 CATTTACTCAGGCGTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054304 ENSRNOT00000088368 2 1 1 60 6 94133699 94133721 GGAACGATACAGAGAAGATTAGC 59 94133661 94133679 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056074 ENSRNOT00000077524 1 1 1 60 20 17843334 17843353 TGTGTCAGTAGATGGCAGAG 59 17843293 17843312 TCATAGGTCAGAACGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044765.1 ENSRNOG00000050313 ENSRNOT00000075759 3 1 1 60 20 19864249 19864270 CTTGAACTCATAGAGATCCACC 58 19864290 19864309 GAGCATGCCTTTAATCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061550 ENSRNOT00000077400 2 1 1 60 20 29265857 29265875 TCAGTGAGTGCAAAGAGGA 59 29265815 29265839 GATGTTCATAGATCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549158 ENSRNOG00000056964 ENSRNOT00000089651 3 1 1 60 11 28056286 28056305 GCCACAAATTCTCCTAAGCC 59 28056327 28056346 GATCCTCCTGTTCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061398 ENSRNOT00000088731 3 1 1 60 15 24789363 24789384 ATACCATGATCATGAAGGTGGT 59 24789405 24789423 CACATCCAGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.3 ENSRNOG00000060613 ENSRNOT00000085454 1 1 1 119 4 164253017 164253035 TAAGGAGACTCAAAGGCCC 59 164249769 164250650 ATGTTTGTCACCAACATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059107 ENSRNOT00000082032 1 1 1 60 4 53535264 53535284 TGTCTCTTGTGCATCAGTAGG 60 53535224 53535247 AGAATACTGGGCATAGATGTATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055470 ENSRNOT00000080483 1 1 1 60 20 45494475 45494496 ATACAGAGAAGATTAGCATGGC 58 45494516 45494535 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061039.1 ENSRNOG00000058405 ENSRNOT00000092130 1 1 1 80 4 103049573 103049970 TGGATTCCTGCTTCCAGAG 59 103049511 103049529 AGAGACTTGACCTCCAAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060424 ENSRNOT00000091293 2 1 1 61 4 135568296 135568316 GCAACACAGAGAAGATTAGCA 59 135568339 135568357 AGAAGCATGAGTGTTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060918 ENSRNOT00000080086 1 1 1 60 20 13248833 13248856 GGCTAAGATCAAGTGTAGTATCTG 59 13248796 13248815 GATATTGCCGCCATAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058535 ENSRNOT00000087296 1 1 1 60 20 7437480 7437500 CAGAAGGGTAAAGGAAGTCTC 58 7437440 7437458 ATCCAAAGAGGAGGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051473 ENSRNOT00000091194 3 1 1 60 20 51711743 51711761 CTTCTGTGTCACATGTTGC 57 51711701 51711721 TTAGCGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000052933 ENSRNOT00000078542 2 1 1 60 19 46006523 46006544 ACTAAATCTTTCTGCTACCCAG 58 46006484 46006503 CTCCTCACAGGTTTCAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054443 ENSRNOT00000090503 1 1 1 60 20 36760111 36760129 GGCATTGTAGGTGTGACAG 59 36760153 36760171 CACAGGTCAGAAGACAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061658 ENSRNOT00000078352 3 1 1 60 11 33789918 33789937 TGCGATTGTTGCTAATTGGA 59 33789960 33789978 CCAATAGGAGAACCAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD66 ENSRNOG00000056119 ENSRNOT00000089119 1 1 1 60 11 83915941 83915959 GATGACGTCTGTTAGTGCC 58 83915899 83915919 GATCCTCAATCCCATCATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000056138 ENSRNOT00000088423 1 1 1 60 19 22964727 22964745 ACTGAGCTAAGGCACTCTG 59 22964685 22964703 TGCTGAAGACAGGTCAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC104053.2 ENSRNOG00000059424 ENSRNOT00000091921 3 1 1 60 18 53089867 53089885 CAGCACACTCTACAGTCAC 58 53089908 53089927 AATAGGGTTAGCACAAACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057652 ENSRNOT00000078104 3 1 1 62 19 24845074 24845098 CAATACAGAGAAGATTAGCATGGTC 60 24845117 24845136 GGAACGATTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000054529 ENSRNOT00000079897 3 1 1 60 9 94900064 94900082 TGAGGATTCTGCCAGTGTG 60 94900106 94900124 TGTTGGATAGCAGTCAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056488 ENSRNOT00000084914 2 1 1 60 19 49521684 49521704 GTTTACCCATTGTTCTCAGTG 57 49521644 49521663 TAGATGAGTTTGCCTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055848 ENSRNOT00000085783 2 1 1 60 18 29382412 29382436 ATGGGAGATAGTATCATCAAGAAGG 60 29382454 29382472 CATGTCAGAAAGCGATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 2 1 1 169 13 54915004 54915026 AGTATCATTACTGGAGAGGCA 58 54915158 54915176 TTTGCACCTACACATTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007385.1 ENSRNOG00000050701 ENSRNOT00000072289 3 1 1 82 2 11885805 11885824 AAGTAAAGGCATTTCCCACC 59 11885868 11885889 AGACAGTACGTAGCAGTCAC 59 Novel Rattus norvegicus 81 AABR07065010.1 ENSRNOG00000042752 ENSRNOT00000064247 2 1 1 60 6 103927707 103927725 GGGTGGAGAGTCATACTGG 59 103927665 103927683 GTGTGAAAGATTGGGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000057441 ENSRNOT00000082127 2 1 1 64 11 70601616 70601634 GTTGAGTTCAGTTCAGGGC 59 70601570 70601588 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 1 1 1 60 4 157008635 157017338 TCAAACAAAGAAGCGGAGG 58 157008593 157008611 CAGTCAGTGCTCTTAACCA 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA5 ENSRNOG00000056003 ENSRNOT00000087539 2 1 1 91 19 10832364 10832382 CTCTCATGATGGGAGCTGG 60 10832435 10832455 CTTATCCCTAGTTCCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051577 ENSRNOT00000089012 1 1 1 60 5 109013252 109013270 GAGAAGATTAGCATGGCCC 58 109013210 109013228 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051685 ENSRNOT00000091779 1 1 1 60 9 84197553 84197574 ATACAGAGAAGATTAGCATGGC 58 84197594 84197613 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034502.1 ENSRNOG00000036328 ENSRNOT00000054450 1 1 1 60 11 74222656 74222674 ATGACCCAAGGCATCTCTG 60 74222698 74222716 CTAGTCGTGCTTGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000054676 ENSRNOT00000086482 2 1 1 82 19 55874990 55875008 AAACAGCAAACAGCATCCC 59 55874926 55874944 GATCGTTAGTGGCAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057193 ENSRNOT00000088074 2 1 1 60 18 2103623 2103641 TCTCCTGTCAGAACTTCCA 58 2103661 2103683 GAAGTCTACAGTATGAAGTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059030 ENSRNOT00000086381 3 1 1 60 5 59230811 59230833 GATACAGAGAAGATTAGCATGGC 59 59230773 59230791 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059918 ENSRNOT00000087014 2 1 1 60 18 56799772 56799790 ACGAAGATTAGCACAGCTC 58 56799730 56799750 TGAACACTTCACATCCTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034772 ENSRNOT00000052895 1 1 1 60 19 42305955 42305973 TGATCTCGGAAGCTAAGCA 59 42305913 42305933 TTGTGTACTATCTCCCATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043829.1 ENSRNOG00000049520 ENSRNOT00000070941 3 1 1 60 19 42778070 42778089 CTCTGAAGCTAGACATTCCG 58 42778029 42778047 TCCTTGGGACTCTAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034324.1 ENSRNOG00000050506 ENSRNOT00000075798 1 1 1 60 11 65309282 65309300 GCCTTGAACTCAGAGATCC 58 65309240 65309258 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC102976.1 ENSRNOG00000057798 ENSRNOT00000086690 2 1 1 60 19 24656570 24656588 AGAAGCCTACAGAACTCCA 58 24656612 24656630 AATTATGTGACGGGAGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000052950 ENSRNOT00000084400 3 1 1 63 5 104951924 104951943 CAATTGTCACTAGACCTCCC 58 104951880 104951898 ATTTCACTCAATTCGCCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068668.1 ENSRNOG00000061298 ENSRNOT00000090539 3 1 1 60 9 114281455 114281473 GCACTGTCAGGATACAAGG 58 114281413 114281433 TACAATCTGGAGAAATGGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 1 1 2 60 6 139486817 139486945 AAAGGTGTCCAGTGTGAGG 60 139486969 139486987 TTCCAGGCTGTACTAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056818 ENSRNOT00000084820 1 1 1 62 6 117514972 117514991 GTAAGTCGTAGGTAGCAGAG 57 117515016 117515034 TTCCGATGGTCATAGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062185.1 ENSRNOG00000056529 ENSRNOT00000080754 3 1 1 80 4 164170206 164170227 GGAATGGATGTAAACAAACCTG 58 164167188 164170167 GAAGGAACTTCAGTTCATCCT 58 Novel Rattus norvegicus 81 AABR07064011.1 ENSRNOG00000047769 ENSRNOT00000071847 1 1 1 138 6 60151456 60151474 ACGCCTTAAGTAGCCAGAC 60 60151577 60151595 GAAGCTCTGGGAATGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026797.1 ENSRNOG00000018554 ENSRNOT00000025031 3 1 1 60 17 1909839 1909860 TGGACTGTAAGGTTTATGTAGG 57 1909800 1909821 CGTTCTAATTCAGTCTTGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131806.3 ENSRNOG00000058218 ENSRNOT00000090787 3 1 1 60 19 22748247 22748267 ACTGTTCCATTCAATGTGCTC 59 22748207 22748226 TCTGAAACTGCTTCTTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051898 ENSRNOT00000085878 1 1 1 60 11 50431627 50431645 CTCCCACTTCTCCTAGCAG 59 50431585 50431603 AGGTCAGAACACTGAGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060768 ENSRNOT00000085428 1 1 1 60 7 5602200 5602219 TCTGTTACACTGTTGATCCC 57 5602242 5602260 ACACCTGCCTAATGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056590 ENSRNOT00000089710 1 1 1 60 7 80951081 80951100 ATCCATGGTCCCTAGAAGGT 60 80951118 80951141 CAACTCAGAGAAAGTCTGATTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057617.1 ENSRNOG00000057824 ENSRNOT00000039430 3 1 1 60 7 80457522 80457544 GTGTAATGAGGATGAGGATTCAC 59 80457484 80457502 AACAGGCACGTAAGTTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052098 ENSRNOT00000079903 1 1 1 60 11 11772996 11773017 TTCATTACATTAGGTGGCAGAG 58 11773032 11773056 CATAGGTCAGAACATTGTAGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058280.1 ENSRNOG00000056425 ENSRNOT00000081130 2 1 1 70 7 108383880 108383898 TGAGATCCAGCTGTAAGGC 59 108383828 108383846 ACAGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045014 ENSRNOT00000070281 2 1 1 60 9 67192638 67192656 TGCACCTGATCTTGTTCTG 58 67192680 67192698 CTCCCATTCATAACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001880.1 ENSRNOG00000060596 ENSRNOT00000015370 1 1 1 70 1 60846713 60846731 ATGATTCCTGGGCACTCAG 60 60846658 60846678 TTCTTGGCTAGAGTCTTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000052826 ENSRNOT00000077203 3 1 1 60 5 8730019 8730040 GGTCATTAGACTGATATGGCTG 59 8729980 8729998 ACTTGGAACTGTGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 3 1 1 74 6 140642047 140642179 AAAGGTGTCCAGTGTGAGG 60 140641991 140642010 GAGTTTCAGAGACCTTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000057766 ENSRNOT00000084504 2 1 1 60 7 140922101 140922119 TAATGGCTGCAAACAGCAG 59 140922059 140922078 GTAACCCACATAGGTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073038.1 ENSRNOG00000017708 ENSRNOT00000023806 2 1 1 60 4 118328559 118328577 ACTCAACGTGACTCTCACC 59 118328517 118328535 GATGATGCTGCCTACTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073038.1 ENSRNOG00000017708 ENSRNOT00000023806 3 1 1 60 4 118328559 118328577 ACTCAACGTGACTCTCACC 59 118328517 118328536 GATGATGCTGCCTACTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000055237 ENSRNOT00000091857 2 1 1 64 7 114579376 114579394 GCAGTTCTTTCCTGTTGGG 59 114579422 114579440 CCAACGATGCCAGATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058464.1 ENSRNOG00000052981 ENSRNOT00000089076 1 1 1 80 7 118473954 118474546 CTGCTATTCTTGAGGGAATCAG 59 118473895 118473913 CTCCTTCAAGGCATCTTCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060993 ENSRNOT00000091180 2 1 1 60 7 6059086 6059104 TGTGTCACATGTGCATCAG 59 6059125 6059146 TACACTGAGTGTAGAAGTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058687 ENSRNOT00000077234 3 1 1 62 11 2143693 2143717 GAGGAAAGAGGTTATTTCTACACTC 59 2143734 2143755 GCTACTAAGCATTCAGTTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061178.1 ENSRNOG00000054121 ENSRNOT00000085062 3 1 1 92 4 108701011 108701030 TGAACAAGACCTTGCAAACC 59 108696741 108700956 TCCTTCAGCTCCTGTTGTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044997 ENSRNOT00000070264 1 1 1 60 4 143489655 143489673 CACATGCCCATCTCATCTG 58 143489695 143489715 TCAAAGTGTTACCTAGACCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0044.1 ENSRNOG00000051195 ENSRNOT00000076373 1 1 1 80 8 4364358 4375127 TCCAATGAGACAGATATGGATCAG 60 4375164 4375184 CTCTAGGCAGTGGATCTTCTC 60 Novel Rattus norvegicus 81 AABR07058633.1 ENSRNOG00000046123 ENSRNOT00000075490 2 1 1 68 7 128762937 128762955 CTACGAAGCACACTGAGTG 58 128762887 128762908 ACTTGGAGTGACAAATGAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054738 ENSRNOT00000079597 1 1 1 60 4 176450599 176450619 TCATAAGGAGGAAGGTCATGG 59 176450559 176450579 GGTTCTAACAGGAGAGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1362.2 ENSRNOG00000051304 ENSRNOT00000076363 3 1 1 83 1 135135848 135135867 CTGTAGCTGGTATGCTTCTG 58 135135912 135162480 TCATGTTCTCTTTCCAGACG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052321 ENSRNOT00000078307 2 1 1 60 11 55842876 55842897 CATTGATTGCCAAGATGATCTG 58 55842837 55842858 CAGTGATAGAGAAAGGGAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033287.1 ENSRNOG00000055793 ENSRNOT00000090586 3 1 1 161 11 15858253 15858271 CAGATAGCTTAGCCAGCAC 58 15858110 15858129 AGAACAGCTGGATAAAGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051649 ENSRNOT00000083406 1 1 1 60 11 29660061 29660081 TATACAAGTAGCTGTGTTCCC 57 29660102 29660121 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112440.2 ENSRNOG00000058234 ENSRNOT00000084680 2 1 1 75 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370602 93370626 GATCAGAACTTGACTATCTAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058239 ENSRNOT00000090829 2 1 1 60 11 10274898 10274917 TATCCTTAGAGGCACTGCAG 59 10274857 10274877 CTCTCAGTCACCTAATGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033859.1 ENSRNOG00000036332 ENSRNOT00000054454 1 1 1 60 11 40945160 40945181 TAACATGCCTTAGGTATCACTG 58 40945201 40945220 GTCATGCTTGAGAATGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053493 ENSRNOT00000088359 1 1 1 60 17 18319732 18319750 GAGAAGATTAGCATGGCCC 58 18319774 18319792 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051715.1 ENSRNOG00000047541 ENSRNOT00000072214 1 1 1 82 3 19961698 19961718 CTGTCAGCCTTGATCAAGC 59 19961762 19961782 CCAATGCAAATGGGTATTTCC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000060092 ENSRNOT00000086170 2 1 1 73 9 107804416 107804436 GTGATCTGGCTGTGAAATCTC 59 107804363 107804381 AATCCACCAAGTCAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057508 ENSRNOT00000077779 2 1 1 62 9 43323787 43323807 CAATGAGGTTTATCTGAGGCA 58 43323831 43323849 CCAGAAGAGGGCATCAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056664.1 ENSRNOG00000041366 ENSRNOT00000063119 3 1 1 61 7 35249844 35249865 TCAGAGGCTTATAGATCCAAGC 60 35249887 35249905 CAGCTTCTGAAGCCTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003650.1 ENSRNOG00000054073 ENSRNOT00000072981 1 1 1 81 1 117180173 117180195 TCACCTCACACCAGAATGG 59 117180239 117180258 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000061452 ENSRNOT00000079635 2 1 1 60 17 25600751 25600772 TCCTCAAACAGAAGAAACTCAG 58 25600790 25600811 AAAGTATAACCGCCATAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063282.1 ENSRNOG00000056254 ENSRNOT00000089127 1 1 1 61 6 26641096 26641118 ATACTGAGGAGAGCCACCA 60 26641053 26641071 TTTCCACCTTTGCTCTGAC 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000055906 ENSRNOT00000091802 2 1 1 60 4 93981209 93981231 CTACAGGTATAGAAGGTGTTTCC 58 93981171 93981192 CTCTTATCTGCCACCTAATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061717 ENSRNOT00000090020 2 1 1 60 7 23826042 23826063 ACACTACAGATATTAGCATGGC 58 23826082 23826102 GGAATGCTTCACAAATTTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059499 ENSRNOT00000081274 1 1 1 60 17 88628607 88628626 TGTGTCAGTATGTGGCAGAG 60 88628566 88628586 TCATAGGTCAGAACTCCAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057900 ENSRNOT00000081093 1 1 1 60 7 93868669 93868687 GGCAGGAAATATACCACGA 57 93868709 93868729 GCAGAGTGTAATGGGTAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064218.1 ENSRNOG00000053727 ENSRNOT00000089761 1 1 1 60 6 69619428 69619446 AGTTGAAGAAGAGCCTGGA 58 69619470 69619488 TTCATCACCACGTCATGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057694 ENSRNOT00000081451 2 1 1 60 9 96338201 96338223 GGAACGATACAGAGAAGATTAGC 59 96338163 96338181 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000057120 ENSRNOT00000085369 3 1 1 60 10 55593682 55593702 GAGAACTGCTAGTATTCTGCC 58 55593721 55593742 TACCTCTGCTAGACTTGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000059318 ENSRNOT00000085365 1 1 1 60 8 22715693 22715711 GGAGCCACCTCTAAAGGTG 60 22715735 22715753 AGAAGCTGAGTTGAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910814 ENSRNOG00000030477 ENSRNOT00000042020 1 1 1 198 10 87788657 87788675 CTTGCTGTCAAACCACCTG 59 87788837 87788855 CTGGAGATACAGCACCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054837 ENSRNOT00000087077 2 1 1 60 8 94377984 94378002 GTCAGTAGGTGGCTGAGAG 59 94378025 94378044 TGTTTACAGGTCAGAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009715.1 ENSRNOG00000031378 ENSRNOT00000049885 3 1 1 60 2 109317620 109317641 TGACTGTGTCTATGGACTAGAG 59 109317662 109317680 GAGGACTTCAAGTGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025787.1 ENSRNOG00000059962 ENSRNOT00000089505 3 1 1 89 16 50502266 50502284 TCTTCTGCAGCTGAAACTC 58 50502338 50502356 AGTAAGCTTGCAGTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026063.1 ENSRNOG00000052943 ENSRNOT00000083358 2 1 1 81 16 62165422 62165444 CAGTCCTTACAAGCATTAACAC 58 62165484 62165505 TACAAGAAAGAGTAACTGCTGG 58 Novel Rattus norvegicus 81 AABR07012587.1 ENSRNOG00000002223 ENSRNOT00000003022 1 1 1 60 2 198591468 198591486 CAATGGCTCTGACAGTTGG 59 198591426 198591445 AATGCAGCCATAGCTAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680428 ENSRNOG00000042701 ENSRNOT00000065405 3 1 1 60 10 87808857 87808875 GCTTCCTACCAACTTGCTG 59 87808899 87808917 CAGGTGGGTTTAATCGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 3 1 1 74 X 157458859 157458879 CATTCTTCTTGCAAGGGAGG 59 157458804 157458827 GTAAAGGGATGGATCTCTATAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054551.1 ENSRNOG00000058278 ENSRNOT00000085848 3 1 1 114 3 159863543 159863563 AGAGTGCAAGTCTACATCCAC 60 159863640 159863663 CGAGAATCCCACAAGGGAG 60 Novel Rattus norvegicus 81 AABR07002250.2 ENSRNOG00000059513 ENSRNOT00000083609 2 1 1 80 1 69876854 69876876 TCTTGATGATTCTCAGAGACTCC 60 69876915 69877349 GGTATGAGTCCCAATGAGGT 59 Novel Rattus norvegicus 81 AABR07071328.1 ENSRNOG00000043551 ENSRNOT00000068818 3 1 1 62 8 109711134 109711152 GTGTGGCCTTATTGGAGGA 59 109711177 109711196 GCTTGAGCATCTGAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034612 ENSRNOT00000052735 2 1 1 60 8 39196750 39196768 TGATCTCGGAAGCTAAGCA 59 39196708 39196728 CCATCTTTCATCTCCCATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060332 ENSRNOT00000092052 3 1 1 60 3 44774043 44774063 CAATCCTGCTGAAGCTATTGG 60 44774003 44774024 CAAGTTATAGGCACAGACAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059193 ENSRNOT00000091547 3 1 1 60 13 64233742 64233761 TTCTGTCAAGGGTATTCGAG 57 64233784 64233802 TTGAGAGCTTGTTTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059242 ENSRNOT00000084943 1 1 1 60 13 7096356 7096374 TAGGTGGCAGGAAGTAGAG 58 7096314 7096335 CATTCAGAAGTTCATAGGTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010682.1 ENSRNOG00000047765 ENSRNOT00000072356 1 1 1 80 2 147207918 147207940 AGATTTCACCTCACATGCG 58 147207983 147208002 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054897 ENSRNOT00000089600 3 1 1 60 8 97413489 97413510 TCCCAAATACTGAAGAACTCTG 58 97413528 97413549 GCTTAAAGGTTCTAGACAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.1 ENSRNOG00000049620 ENSRNOT00000071360 3 1 1 64 8 116713481 116713499 TTTCTCTGTGTAGCCCTGG 59 116713527 116713545 TATGAGTTCAAGGCCAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130555.1 ENSRNOG00000051506 ENSRNOT00000083931 2 1 1 60 8 22529831 22529849 CAGTGTTCCTCGTGTTCAG 59 22529789 22529807 CAGCCTAACCAATGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114017.2 ENSRNOG00000061210 ENSRNOT00000078747 3 1 1 81 10 38827094 38827116 TCATTTAGTCAACAAGGCTTGG 59 38827034 38827053 CTGTCGGAAAGAAATTCGGG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000058622 ENSRNOT00000089738 1 1 1 60 8 72902462 72902480 TGCATGTGATCCCTCAGTC 60 72902504 72902522 ATTGCAGTGGCTAAGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069611.1 ENSRNOG00000061279 ENSRNOT00000041677 1 1 1 82 8 33902660 33902678 AAACACCAATGGCTTACGC 60 33902592 33902615 CGTGTCCTTCTTACAGAAGC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000060720 ENSRNOT00000086743 3 1 1 60 8 64477632 64477650 TCATAGGAGACAGGGAAGC 58 64477671 64477692 ACATTCCTAAACTCAATGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056584 ENSRNOT00000084606 2 1 1 61 8 102277729 102277753 GGATACCCTATCTACTGAAATTGGA 60 102277772 102277790 CATCCTTTCTCAGGGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048483 ENSRNOT00000074952 2 1 1 60 1 262963642 262963661 CTGAACATGCCAGATCTCAG 59 262963601 262963622 CTCCTATCCAAGTTCTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114502.1 ENSRNOG00000056363 ENSRNOT00000081642 2 1 1 86 16 49518964 49520297 AAGGATTTGCCTAACAAGACAC 59 49518899 49518919 CATTGAATGGAGAGTCTTGGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056046 ENSRNOT00000080882 3 1 1 60 8 76838274 76838296 GATACAGAGAAGATTAGCATGGC 59 76838236 76838254 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126581.1 ENSRNOG00000058291 ENSRNOT00000090642 3 1 1 114 1 220072136 220072325 AAGTTACACAGTCAAGGGTC 58 220072402 220072420 CTATGAAGCCTTCACAGGG 58 Novel Rattus norvegicus 81 ENSRNOG00000032310 ENSRNOT00000044428 2 1 1 71 1 129227883 129227902 TTATGCCAGGATTCATGTGG 58 129227816 129227837 AGTTCTTACCCTCCAATTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000077198,ENSRNOT00000084699 2 2 4 85 20 4428379 4428397 ATCGTCTCTGCAAGCTCTG 60 4427917 4427935 TGGAGGGTTTCTCTTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055825 ENSRNOT00000083885 1 1 1 60 8 63239968 63239987 CTAGACTATGTCCTGCTGCC 60 63240008 63240028 TGGTGAAAGTCAGATGTACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055825 ENSRNOT00000083885 2 1 1 60 8 63239958 63239980 TGTCATGTCTCTAGACTATGTCC 59 63239997 63240018 CAGATGTACCCTGAAATTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044278.1 ENSRNOG00000049494 ENSRNOT00000071753 2 1 1 80 20 956123 956143 TGGTGACATATCTATTGGGCT 59 956061 956081 ACATTGGAGACTGGAGTGG 59 Novel Rattus norvegicus 81 AC094221.1 ENSRNOG00000054338 ENSRNOT00000079863 3 1 1 82 20 1050063 1050283 GGGACCACAGAAATAGCAG 58 1049999 1050017 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 AC108323.3 ENSRNOG00000057487 ENSRNOT00000079725 2 1 1 73 20 11620795 11620813 TACCAAGTGGCTTACTGTG 57 11620740 11620758 ACAGAAGACTGACAGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024795.1 ENSRNOG00000028958 ENSRNOT00000047499 1 1 1 60 16 16949458 16949477 TCTTCCAGGAACAAGATCCC 59 16949500 16949518 ACGACATACTCAGCACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024825.1 ENSRNOG00000048427 ENSRNOT00000071397 2 1 1 60 16 18380519 18380539 GAACCTTGTTGCTGAAATCCT 59 18380479 18380498 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055360 ENSRNOT00000087882 2 1 1 85 3 15415345 15415363 GTCCACAGGTCAGGTACAG 59 15415278 15415296 CATCCATGTCGGCTTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057435 ENSRNOT00000089019 1 1 1 60 3 141985146 141985164 GTGCTCAATTCGGTAGCAC 59 141985104 141985123 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061745 ENSRNOT00000079666 1 1 1 60 3 141471559 141471578 GCTTGATTGAAGAGGATGCC 59 141471518 141471537 TTGAACTCACATGCCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 1 1 1 65 18 2189093 2195793 GTAGGTGAAGAGGTTGAGTG 58 2195821 2195839 AACTCAGAGCAGTTCTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 2 1 1 78 14 31003064 31058230 GAATTTCAAGAAGTCCGGTG 57 31003005 31003025 AGCACAACATGTAGCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 2 2 2 80 14 32869829 32869849 ATTCTCAGGTTCATCCAAACG 59 32856122 32869790 AGTATAAGAAGGCTCTGTCCAC 59 Novel Rattus norvegicus 81 AABR07014875.1 ENSRNOG00000058665 ENSRNOT00000088185 1 1 1 80 14 34905938 34906491 CCATGTTCCAAAGGTCGTG 59 34906531 34906553 GGATAATTAATCGTCTGGAGGTC 59 Novel Rattus norvegicus 81 AABR07014885.1 ENSRNOG00000053058 ENSRNOT00000081289 1 1 1 88 14 35803125 35803143 CTAAGCTGCTGGGAGAGTG 60 35802376 35803074 CTCTCAAATCAGTGCCATCG 59 Novel Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 2 1 1 82 18 8497668 8503629 TTCCTGGAACAGAGCACAG 60 8497604 8497622 ACTTTCCATTTCCAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031404.1 ENSRNOG00000061117 ENSRNOT00000081412 1 1 1 99 18 12390174 12390193 TTTCCAGTCATGTGGAAGAG 58 12384198 12390112 TTCTTAAGGTTCCCGTCAC 57 Novel Rattus norvegicus 81 AABR07015399.1 ENSRNOG00000051674 ENSRNOT00000090450 3 1 1 80 14 53798630 53798652 GCTCAGTACATCTTTACTACCAC 59 53798692 53806679 ATCACTCTACCTTCCTGGG 58 Novel Rattus norvegicus 81 AABR07047054.2 ENSRNOG00000058921 ENSRNOT00000086257 2 1 1 60 5 17592632 17592652 AAGGATTATCTTGTCAGGCCA 59 17556481 17556501 ATTCAGGACAATAGCCAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029831.1 ENSRNOG00000053014 ENSRNOT00000086494 1 1 1 93 10 53680331 53685777 CCGTTGTGAATGCAAAGGA 59 53680256 53680274 ACTGTCTAAACCAGTGGGC 60 Novel Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 3 1 1 61 5 24974449 24974469 GTACAGGCTATGAACTTTGTG 57 24970313 24974429 ACCTTTCCTGATGAATGAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030085.1 ENSRNOG00000053262 ENSRNOT00000088849 1 1 1 60 10 66582269 66582287 TTGAGGGAGCTGCTTTCTC 60 66582776 66582794 TCTTCTGTGTTGCAAGGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060930.1 ENSRNOG00000059343 ENSRNOT00000083757 2 1 1 63 4 101318766 101318784 CTCTAATGGGTGGCACCTC 60 101307121 101307143 GTCATTACTTGTAAGCTGGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030086.1 ENSRNOG00000055755 ENSRNOT00000079968 3 1 1 81 10 66631600 66674100 AGGAATGTCCCTATCTAAGGT 57 66674140 66674161 AAGGTAAACTCTTCCAGTTGAC 58 Novel Rattus norvegicus 81 AABR07015654.1 ENSRNOG00000054916 ENSRNOT00000090988 3 1 1 80 14 68876578 68876597 AAGCCAACAGGATTTAGTGG 58 68802065 68876535 ACATTCTTCAAGCTTGCCA 58 Novel Rattus norvegicus 81 AABR07061096.1 ENSRNOG00000058873 ENSRNOT00000080070 1 1 1 121 4 104290717 104290736 CATATGTGGCATTTCTCCAC 57 104301204 104301224 CCACCTGAAGTTTAACTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07047528.1 ENSRNOG00000055329 ENSRNOT00000077184 3 1 1 62 5 36435104 36435124 ACTGGATCCTCTACAACTGTG 59 36434047 36435083 TTCTGAGATTGCTGAAGATCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000085786 2 1 2 82 1 14938552 14949523 AGAATTCAAGCATGCAATGG 57 14949568 14949586 ACACGTAGGTTGAGATCCA 58 Novel Rattus norvegicus 81 AABR07061246.1 ENSRNOG00000057830 ENSRNOT00000079910 3 1 1 68 4 111738358 111738377 GGACCACCTTACTTCTACCC 59 111743434 111743455 AGTGGAAATCATCGTGTAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 1 1 1 73 10 78339985 78340602 AACCAATAGCCCAATGGTG 58 78339930 78339948 GAGTAATGCACTGTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048010.1 ENSRNOG00000057330 ENSRNOT00000091600 2 1 1 82 5 56684245 56684878 CCCTTTCTAAAGATAACACAGCG 60 56684915 56684938 CATGTTGTCATATACTCTTAGGGC 59 Novel Rattus norvegicus 81 AABR07000523.1 ENSRNOG00000053617 ENSRNOT00000081799 2 1 1 60 1 16462966 16462987 CCATGATCCTTCCTTACTTCCT 59 16463008 16463026 GCCCTTAGACATCACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048139.1 ENSRNOG00000057107 ENSRNOT00000078497 2 1 1 92 5 64438017 64438035 GGAAGAAGCCAGGAAGGAG 60 64438089 64440482 TTCTCGGGAACTATGATGTCC 59 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000084174 1 1 2 80 4 117655198 117663064 ACGTTGAAGACCTGAATCCA 59 117655137 117655157 AAGGATGATTCCAGAATCCGT 59 Novel Rattus norvegicus 81 AABR07030450.1 ENSRNOG00000055695 ENSRNOT00000077366 3 1 1 99 10 87041798 87045812 CTGTGACATAGGAGCCCAC 60 87045875 87045893 TGTTTACCTGTGGTCGACC 60 Novel Rattus norvegicus 81 AABR07061384.1 ENSRNOG00000058483 ENSRNOT00000091313 2 1 1 80 4 120994863 120994884 AGAACAAAGACTCATGTAGGAG 58 120993721 120994822 ATGCAATGAGTGAAGCTGG 59 Novel Rattus norvegicus 81 AABR07030482.1 ENSRNOG00000053646 ENSRNOT00000085625 2 1 1 81 10 89777861 89778356 GACATTGAAGGGTTTACTCCAG 59 89778398 89778416 ACCTGACGGTTACTTGGTC 59 Novel Rattus norvegicus 81 AC128759.3 ENSRNOG00000052726 ENSRNOT00000086202 1 1 1 60 1 22454805 22454825 AGTGTTTACTCTGTGTTCTGG 58 22453893 22454783 GAACAAGGTGTGGTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048856.1 ENSRNOG00000061374 ENSRNOT00000084791 1 1 1 80 5 93794072 93794093 AGGAAGATCCTCAGTAGTACAC 59 93794133 93799972 CAAGGGTATCAGAAGATGCG 59 Novel Rattus norvegicus 81 AABR07061609.1 ENSRNOG00000057913 ENSRNOT00000087666 1 1 1 96 4 135877624 135886919 TTCATAATGAGGCCAACGC 59 135886976 135886997 ACTGGATAAACTCAACCTTCTC 58 Novel Rattus norvegicus 81 AC133055.1 ENSRNOG00000056790 ENSRNOT00000083042 2 1 1 106 10 94485401 94485419 ACCTGTGAGAATCCTGTGG 59 94483767 94485334 TTCTGAATCTGAATCCAGTGTG 59 Novel Rattus norvegicus 81 AABR07049033.1 ENSRNOG00000055709 ENSRNOT00000089350 2 1 1 80 5 100777503 100812143 GTCCATAAGCTCATCAGCTC 58 100812186 100812204 CTCAGTGTCTTCTTCACGC 59 Novel Rattus norvegicus 81 AABR07061848.1 ENSRNOG00000052200 ENSRNOT00000089502 2 1 1 85 4 149372162 149382964 CACTGTAGTGATATTCTCAGTGTC 59 149383008 149383026 CATTAAAGGGACCCGACCA 59 Novel Rattus norvegicus 81 AABR07049035.1 ENSRNOG00000057188 ENSRNOT00000086659 1 1 1 83 5 100882903 100882921 GTTACAGCTTCTCCTCCCA 59 100872247 100882856 TTCGTGGGAACCTCAAGTC 60 Novel Rattus norvegicus 81 AABR07062026.1 ENSRNOG00000054974 ENSRNOT00000090715 3 1 1 60 4 156727579 156727597 CATTTCAGAAGCTGCAGGA 58 156736834 156736853 ATGTTGGCTTTAGCATGTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062046.1 ENSRNOG00000057403 ENSRNOT00000084248 1 1 1 60 4 158762663 158791070 CAGAATCATTGCCAGGCTC 59 158791092 158791112 GCTTTCTGATCATTCCATGAG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07001054.2 ENSRNOG00000057357 ENSRNOT00000086733 2 1 1 80 1 35965854 35965872 GTTTACCAGGAGACCAGTG 58 35924779 35965811 GGAAAGTGACCCATGATGAG 58 Novel Rattus norvegicus 81 AABR07049503.1 ENSRNOG00000059476 ENSRNOT00000087040 3 1 1 80 5 124772447 124772467 TGACTGGAAACTAACACAGCT 60 124771035 124772407 GGCAAATGCTACAGTCATCTC 60 Novel Rattus norvegicus 81 AABR07049510.1 ENSRNOG00000052641 ENSRNOT00000083989 2 1 1 80 5 125069360 125070166 CTTCCAGAACTGAGTCCTAGAC 60 125070206 125070225 CTTTGGAGGTTCTGATGCAC 59 Novel Rattus norvegicus 81 AABR07049510.1 ENSRNOG00000052641 ENSRNOT00000083989 3 1 1 80 5 125069361 125070166 TTCCAGAACTGAGTCCTAGAC 59 125070208 125070226 GCTTTGGAGGTTCTGATGC 59 Novel Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 2 1 1 60 4 171959402 171960438 TTAGTGCCACGATTCAGTG 58 171960461 171960480 ACACTCTTCCTTTCCAATCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033184.1 ENSRNOG00000056410 ENSRNOT00000078567 2 1 1 88 11 9373180 9416205 AAAGAACCGACCAGACTCTC 60 9416255 9416274 GGGTATTCACTGAACTGCAC 59 Novel Rattus norvegicus 81 LOC102548428 ENSRNOG00000054173 ENSRNOT00000079775 2 1 1 81 15 23984837 23985079 GGGACTCTAATGGCAATATTGC 60 23984777 23984799 CTAGAATTCCAAGATGTCCTCAC 59 Novel Rattus norvegicus 81 AABR07017701.1 ENSRNOG00000060201 ENSRNOT00000084474 1 1 1 84 15 30218952 30219194 TTTGTCTGGATGTAATGTGGC 59 30218888 30218906 GTCCAGGGTGATGTCTTCC 60 Novel Rattus norvegicus 81 AABR07017765.1 ENSRNOG00000058922 ENSRNOT00000083279 3 1 1 80 15 30752071 30752092 AGCATGGAAGTCATTACTAGAG 58 30752128 30769957 GAATATCCACTAATTCCTAGGGAG 58 Novel Rattus norvegicus 81 AABR07062539.4 ENSRNOG00000057468 ENSRNOT00000086445 2 1 1 79 4 181686280 181686298 AGAAACTGGCCTTTGATGG 58 181686144 181686168 CCTGTGTCCTTGTTAATATCTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017846.1 ENSRNOG00000054812 ENSRNOT00000083711 2 1 1 80 15 31812764 31812782 CATGCAGAAGGACAAGTGC 60 31812824 31813066 ACATTACATCCAGACAAAGCC 59 Novel Rattus norvegicus 81 AABR07017846.1 ENSRNOG00000054812 ENSRNOT00000083711 3 1 1 81 15 31812763 31812781 TCATGCAGAAGGACAAGTG 58 31812824 31813066 ACATTACATCCAGACAAAGCC 59 Novel Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 3 2 2 84 5 142406974 142406992 CCATACAGACATCACCGTG 58 142405990 142406926 CAGAATGTGCTGGTCTGTG 59 Novel Rattus norvegicus 81 AABR07031762.1 ENSRNOG00000054852 ENSRNOT00000092001 2 1 1 65 18 33155990 33156008 CCCACAGGATGAGAATCAC 58 33142297 33142316 GCTTCTTACACTTCAGTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001623.1 ENSRNOG00000061719 ENSRNOT00000089974 1 1 1 60 1 54325039 54325057 TGCTACAAACCAGGTCCAG 60 54325343 54325361 GAGGGTGACAGATCTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001634.1 ENSRNOG00000060438 ENSRNOT00000078019 2 1 1 119 1 54441388 54441406 CCTCCATAGGTCAGTGTCC 59 54441152 54441305 ACCACTGAAGGAACCTCTG 59 Novel Rattus norvegicus 81 AABR07018116.1 ENSRNOG00000054194 ENSRNOT00000081842 2 1 1 80 15 40681587 40684482 GCTTCAGAAAGTCTTATGTACAGAG 60 40681531 40681550 TGTCCAACTGCTGTATAGCT 59 Novel Rattus norvegicus 81 AABR07032135.1 ENSRNOG00000054920 ENSRNOT00000090933 1 1 1 80 18 48828259 48853177 GACGGAAAGTTAAAGGCTCTC 59 48853218 48853237 TGTTCTCAACAAGGTATGCC 58 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000085066 1 1 2 61 18 50430251 50434457 TACCACCAGTGTGCTAAGG 59 50430208 50430226 AAGCACTCCTCCATCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC118858.1 ENSRNOG00000052836 ENSRNOT00000080156 3 1 1 102 18 51732430 51732448 CTCTCGTACCCACTCAGAG 59 51732622 51732640 GAGGAGAGGGTGGATACGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 2 2 2 81 6 37195834 37199499 AGGGACAAGAACAGGATGG 59 37199543 37199562 TTCCCTGAGAAGTGAATTGC 58 Novel Rattus norvegicus 81 AC098462.3 ENSRNOG00000058214 ENSRNOT00000088236 1 1 1 80 1 63301740 63315764 CTAGTATCACAGCGTCTGGT 59 63301679 63301699 AGCACCAATAGCTGTAATCTG 58 Novel Rattus norvegicus 81 AABR07063640.2 ENSRNOG00000056615 ENSRNOT00000079323 2 1 1 70 6 38859622 38859641 TATGAATGTCCCTGGACCTC 59 38858031 38858049 CACGTAGAACAATGGCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063654.1 ENSRNOG00000051754 ENSRNOT00000080278 2 1 1 95 6 40140392 40140414 GGTCAGATAGAAGACTTCTACAC 58 40137560 40137579 GTTTCCACAATTTCTCCCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018390.1 ENSRNOG00000060737 ENSRNOT00000078552 2 1 1 98 15 55406344 55406362 TCTGATACCTCCAACTGGA 57 55405124 55406285 CCTTACTGTGTTGATTTCTTCC 57 Novel Rattus norvegicus 81 AABR07002262.2 ENSRNOG00000061569 ENSRNOT00000090639 3 1 1 80 1 70297333 70297352 CTTCACACCTGGAAGAAGAG 58 70297394 70300603 GTCTCCTCTCAGGACTTCTC 59 Novel Rattus norvegicus 81 AABR07063743.1 ENSRNOG00000051468 ENSRNOT00000091185 1 1 1 80 6 45384349 45389174 CTAGGATGCAGAATTCCCG 58 45384287 45384305 TTGCCTTCCAGAAACATCC 58 Novel Rattus norvegicus 81 AC130035.2 ENSRNOG00000055931 ENSRNOT00000079780 2 1 1 103 5 172891806 172891824 CTGCCCTCAGATAAGAGGG 59 172891177 172891197 GGTTTCCAGGATACAGATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063755.1 ENSRNOG00000054811 ENSRNOT00000080008 1 1 1 80 6 46622299 46622318 TCATGAAGAAAGGCAAAGGG 59 46621698 46622259 TGGAGAAATTTCTGGAACTGTG 59 Novel Rattus norvegicus 81 AC135265.2 ENSRNOG00000058112 ENSRNOT00000079142 1 1 1 60 18 70787511 70787529 CTGCTCCTATAGAGGCTGC 59 70787016 70787034 GCTTCTAAGAGATGCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 1 1 1 79 3 3955902 3956355 ACCAGGACTGAATGCTGAG 59 3956398 3956416 CTGATTGGACTCAGGACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051332.1 ENSRNOG00000053371 ENSRNOT00000090398 2 1 1 131 3 4988253 4988272 TTATGTGCAGCTCAACATGC 60 4988613 4988631 TTCAGAGACAGCACTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019140.1 ENSRNOG00000057742 ENSRNOT00000089362 2 1 1 80 15 90809242 90842233 AGGATGAAAGATTTGCCAACTC 59 90842274 90842292 TCAAGCTCGCTATCCTCTC 59 Novel Rattus norvegicus 81 AABR07019253.1 ENSRNOG00000057939 ENSRNOT00000080408 2 1 1 60 15 96608595 96608877 CTTCTTTAGGCCACAGTGAC 59 96608554 96608575 TCCATACATAAATCCCAGTTGC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07019254.1 ENSRNOG00000052453 ENSRNOT00000089312 1 1 1 105 15 96779981 96789138 GGTTTATGAAAGCAATCGCT 57 96779895 96779913 GTCAAGTTCAGTGTTGGGA 58 Novel Rattus norvegicus 81 AABR07064230.1 ENSRNOG00000054247 ENSRNOT00000092098 1 1 1 80 6 70217558 70218073 CAATAAAGTGTCACCGTGAGAG 59 70218110 70218132 CAGCTGTCTTCCTGTATTAACTG 59 Novel Rattus norvegicus 81 AABR07064230.1 ENSRNOG00000054247 ENSRNOT00000092098 3 1 1 81 6 70217557 70218071 CCAATAAAGTGTCACCGTGAG 59 70218110 70218132 CAGCTGTCTTCCTGTATTAACTG 59 Novel Rattus norvegicus 81 AC132699.2 ENSRNOG00000058830 ENSRNOT00000088688 2 1 1 80 18 79316761 79316780 ATTATCCAAACCCATCAGCC 58 79316821 79317515 GAACGATATTGATGCATGGAG 57 Novel Rattus norvegicus 81 AABR07051431.1 ENSRNOG00000060585 ENSRNOT00000089483 1 1 1 86 3 10966162 10967069 CTTTGTGATGCTGTGGAGAC 59 10967118 10967136 GAAGATCCCAGCTTCCCTG 60 Novel Rattus norvegicus 81 AABR07019383.1 ENSRNOG00000056294 ENSRNOT00000080477 1 1 1 80 15 103286822 103286932 AGGAACCAGATCTGTGGAC 59 103286974 103286994 ACATCAACTCCAGAACTTGTC 58 Novel Rattus norvegicus 81 AABR07051438.1 ENSRNOG00000060208 ENSRNOT00000082735 3 1 1 80 3 11277975 11277994 GTTAGGACCTTCCCTATGCT 59 11278036 11278803 GTCAGGATGTGTCTTGAAGG 58 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 3 1 1 79 15 103583562 103583580 ATGTTGGACATACTCGGCT 59 103576117 103583520 AATACCTGTTTGATGCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032834.1 ENSRNOG00000057899 ENSRNOT00000088704 2 1 1 80 18 85003641 85067853 AGAATGGGCAGGAGATCAC 59 85003579 85003597 CTCTGAGGCAGAACAATGG 58 Novel Rattus norvegicus 81 AABR07051639.1 ENSRNOG00000058342 ENSRNOT00000078895 1 1 1 80 3 18562154 18562175 CACAGATCACATACAGACATGG 59 18562212 18562357 GTCACATATGGCATCTGTAATCC 60 Novel Rattus norvegicus 81 AABR07071904.2 ENSRNOG00000061879 ENSRNOT00000089191 1 1 1 80 1 94834265 94834285 GATCTTCAAGTTGGAGCATGG 59 94834325 94836520 TACATGCTCAGATCTGGAAGG 59 Novel Rattus norvegicus 81 AABR07064840.1 ENSRNOG00000061310 ENSRNOT00000088224 3 1 1 94 6 97456282 97457244 ATGAGACAACTGAACGGCT 59 97457301 97457320 CTCTTCTGAATGAGCTGCTC 59 Novel Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 2 1 1 88 11 27599556 27599574 AGGAGCAAGAACAGGATCG 60 27599624 27607278 TGCAGCTTCTCAATTTCTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020744.1 ENSRNOG00000060402 ENSRNOT00000087283 2 1 1 82 13 38191284 38206386 GTCTCAGAAAGACAGAACCC 58 38191221 38191242 CTGACCTTTAGTTTCAACTAGC 57 Novel Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 3 1 1 96 3 30111698 30111716 ATTCATGTGAACCCTCACG 58 30111775 30111918 AAAGTCCGAGCCAAATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC120732.1 ENSRNOG00000056508 ENSRNOT00000087222 1 1 1 64 11 31269699 31269717 CATACTCAAAGGCCTGCCT 60 31270276 31270294 AGTGCTTAACAGCAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033688.1 ENSRNOG00000061175 ENSRNOT00000091641 3 1 1 80 11 35327108 35327128 AAGTCCATCATCTTCCATCTC 57 35326018 35327069 GTCATTTCCATCCTTTCAATGG 58 Novel Rattus norvegicus 81 AABR07033697.2 ENSRNOG00000056122 ENSRNOT00000083241 1 1 1 117 11 35618885 35618903 TTTACTGCTGTGTCACCAC 58 35608237 35608255 TACTGTGTCCACGTTCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021213.1 ENSRNOG00000055995 ENSRNOT00000086787 1 1 1 83 13 60825107 60825126 CCAGTGATATGGAGTCTCCC 59 60824903 60825062 CCTTGTATTCGATGCCACTG 59 Novel Rattus norvegicus 81 AABR07021221.1 ENSRNOG00000052921 ENSRNOT00000086824 2 1 1 63 13 61423319 61423337 GAAACAAACATCGAGGCCA 59 61422836 61422860 GTAGGAGAAGACTTAGTCTATTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 1 1 1 60 13 65747809 65750216 GACTTCATGTTCAGAGCACC 59 65750236 65750257 TGTTTGTAGGTAGCTCTATGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033854.1 ENSRNOG00000054956 ENSRNOT00000091956 2 1 1 135 11 40603456 40603478 CCAGCTGATTCCAACTTATAGTG 59 40601999 40602017 AGTCTTGATGACAGTGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065312.1 ENSRNOG00000057714 ENSRNOT00000088639 3 1 1 100 6 120649369 120649387 TCAGGCACTTCTCCATGTC 59 120636335 120649309 GTGTAGGTCACCTATATCCAAGG 60 Novel Rattus norvegicus 81 AABR07021430.1 ENSRNOG00000051975 ENSRNOT00000077264 2 1 1 80 13 71444373 71444391 ATGACCGACGTTAAAGGGA 59 71441225 71444331 TTTCATCCTCTTGTCTTTGGC 59 Novel Rattus norvegicus 81 AABR07021433.1 ENSRNOG00000054898 ENSRNOT00000088145 2 1 1 61 13 71599699 71599717 ACTACCTACACTCTGCTGC 59 71614071 71614089 CTGATGACGTTTCGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021433.1 ENSRNOG00000054898 ENSRNOT00000088145 3 1 1 62 13 71599700 71599718 CTACCTACACTCTGCTGCC 60 71614073 71614091 GTCTGATGACGTTTCGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021503.1 ENSRNOG00000056444 ENSRNOT00000089079 1 1 1 80 13 75234120 75234141 GCCAAATCTTAAGCTCCTTCTG 60 75234179 75235095 ATTCTCCCACAAACTCAAACTG 59 Novel Rattus norvegicus 81 AABR07021636.1 ENSRNOG00000056222 ENSRNOT00000088180 1 1 1 80 13 83138213 83138233 GGAAACACATTTCACTCTCCT 58 83130011 83138172 GAAGCCTGAAGTTCCAAGTC 59 Novel Rattus norvegicus 81 AC141937.2 ENSRNOG00000060226 ENSRNOT00000081046 3 1 1 153 6 127386250 127386268 CAGTTCTTGTTGCCTGTGG 59 127385350 127385620 CAAATGATGTTCCCGGCAC 60 Novel Rattus norvegicus 81 AABR07021717.1 ENSRNOG00000057638 ENSRNOT00000090606 1 1 1 94 13 87438521 87442514 AGGATACAGACTGAGGCTG 58 87442572 87442590 ACCACCAGTCCTTGATCTG 59 Novel Rattus norvegicus 81 AABR07004085.1 ENSRNOG00000061295 ENSRNOT00000086546 2 1 1 84 1 124059668 124076270 CTAAGAGCACAGCAATGGA 58 124059602 124059620 TATTTACTGCCGCAGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065429.2 ENSRNOG00000060399 ENSRNOT00000086417 1 1 1 80 6 128349578 128358866 GGGATGAACAGAAGTGTCTC 58 128349517 128349535 TTTCTCCAAAGTGGGATGC 58 Novel Rattus norvegicus 81 AABR07065460.1 ENSRNOG00000053628 ENSRNOT00000079871 1 1 1 95 6 129372342 129378222 TCCTTTGGATTCAGTCAGCA 59 129378280 129378298 TGTGAGCTCTGACCAACAG 60 Novel Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 1 1 1 60 3 71664833 71666533 TATGACAAATGCTGCTTTGGG 60 71666555 71666573 AACAACTGAAGGCTTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 3 1 1 61 3 71664834 71666533 ATGACAAATGCTGCTTTGGG 60 71666556 71666575 ACAACAACTGAAGGCTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 1 1 1 67 6 133633008 133642495 ATCCTGGATAGTGAACCGG 59 133632959 133632977 TTTCTACCCAGGCAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065566.1 ENSRNOG00000052627 ENSRNOT00000080743 2 1 1 114 6 134718926 134718944 CCCATGAGTCTCAATGTCC 58 134719022 134719225 GGTTGGTTCCCTTATCCAG 58 Novel Rattus norvegicus 81 AABR07035008.3 ENSRNOG00000058876 ENSRNOT00000089215 2 1 1 83 12 3198507 3208118 ATGCTGTGACACTCCTCTG 59 3208160 3208183 CTTATCACTGGTAGTAACTTGCTG 59 Novel Rattus norvegicus 81 AABR07052894.1 ENSRNOG00000060152 ENSRNOT00000081781 3 1 1 60 3 81753760 81754092 TGAAAGGAGAAGACAGCGG 60 81753718 81753736 AGTGCACCTCAAGGATGAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07004241.1 ENSRNOG00000055614 ENSRNOT00000081182 1 1 1 82 1 132343962 132348771 CCATTACTCTAGGTATTGTATGAGG 58 132343904 132343925 CTACAGCTCAATTCCATTTCTG 58 Novel Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 3 1 1 107 13 105918531 105919468 AAGTCACATTCCCTGGAGC 60 105918442 105918464 GGTCTGACAGTTCTAGAAATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC134037.1 ENSRNOG00000057992 ENSRNOT00000086639 3 1 1 80 13 107643161 107643179 GACTCGGATCTGGATCAGC 60 107643223 107643594 AATCCGGCACATACTTGGA 59 Novel Rattus norvegicus 81 AABR07024546.1 ENSRNOG00000053192 ENSRNOT00000086069 1 1 1 80 16 4707599 4723591 GAGAGGGAGTACAGATACAAGC 60 4707540 4707560 AAGAACTCCTTGGATCCAGAG 59 Novel Rattus norvegicus 81 AABR07004421.1 ENSRNOG00000061327 ENSRNOT00000088363 1 1 1 84 1 141964144 141964162 CTAGGAGGTCTGGTTGAGG 59 141961915 141964096 TTTGCCACCTCTAGCTCTC 59 Novel Rattus norvegicus 81 AABR07024641.1 ENSRNOG00000055192 ENSRNOT00000081730 3 1 1 91 16 9896254 9896272 GAGTGAGAGTGACTGGGAG 59 9898031 9898050 TTCTATCTCAGGAGACTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 2 1 1 60 16 17138165 17139387 GGTGGATAAGATTCATCAAGGT 58 17138126 17138145 AAGCTTGTGGTTACAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.2 ENSRNOG00000056066 ENSRNOT00000088682 2 1 1 81 3 120114665 120116085 GTCAGTAATGAGGCTGGCA 60 120116129 120116148 CTATACCTGTAGGCACTGGG 59 Novel Rattus norvegicus 81 AC096454.2 ENSRNOG00000053575 ENSRNOT00000090408 3 1 1 89 9 17762358 17762380 GTGAGACTGATAGATAAAGACCC 58 17756665 17762309 ATGCGACAGGCATATACTC 57 Novel Rattus norvegicus 81 AABR07024802.1 ENSRNOG00000051830 ENSRNOT00000077235 2 1 1 80 16 17435902 17456244 GAGGAAGATAAGTCTTGACTCAG 58 17456284 17456302 CCTGTTGAAGTGGAAGTGC 59 Novel Rattus norvegicus 81 AABR07053710.2 ENSRNOG00000056972 ENSRNOT00000092011 3 1 1 99 3 121567831 121567851 TGGCCATGATGTTCATTACAG 59 121567911 121568108 GCCATCTCCCATAGACTCTC 59 Novel Rattus norvegicus 81 AABR07066829.1 ENSRNOG00000054111 ENSRNOT00000080385 3 1 1 92 9 18206899 18206918 GCCTGCATTGTATTAGGGTC 59 18206973 18209219 TTCTTCGGCATCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07053717.1 ENSRNOG00000057575 ENSRNOT00000087160 2 1 1 123 3 122417299 122417317 GAACAGACTGCTACCCGAG 60 122418894 122418912 AATCTCAGAATCGCACAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004876.2 ENSRNOG00000053276 ENSRNOT00000084807 3 1 1 80 1 164815956 164815975 GGGTCTTCTTCCTTGAAGTG 58 164823248 164823267 GAAGGAGGACCTCCTAAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 2 1 1 78 9 20523786 20525041 GGGATCCTTCACATGTGAG 58 20525080 20525101 CATAACCTTTGGATCCATTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 1 1 1 60 16 29984016 29993404 CTGGGATGCTTTCAATACTGAC 60 29983977 29983998 ACTTAACTCCTTTCTCCAAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035802.1 ENSRNOG00000052918 ENSRNOT00000078493 2 1 1 97 12 22796247 22796265 TTGAGGAAGCTTCTGGGAC 59 22792789 22796186 TTCAAATGTGGTCCAGGGT 59 Novel Rattus norvegicus 81 AABR07025662.1 ENSRNOG00000059162 ENSRNOT00000089914 1 1 1 80 16 44809930 44809949 AAGCATTCATGTGGAACCTC 59 44783535 44809889 CCTTGTGTCATCAGTTCAGAG 59 Novel Rattus norvegicus 81 AABR07025698.1 ENSRNOG00000054658 ENSRNOT00000090945 2 1 1 60 16 46539952 46539972 GTTCAAGTCCATTCTACTGCT 58 46539912 46539930 CTATCTGAGTCCCACTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036089.1 ENSRNOG00000055993 ENSRNOT00000086585 2 1 1 81 12 34225974 34231596 GATACCCAAGCTGTCTCCA 59 34231638 34231659 TCCACTCAAACTGAAGTTTCTC 59 Novel Rattus norvegicus 81 AABR07005779.3 ENSRNOG00000054961 ENSRNOT00000086620 2 1 1 60 1 198242838 198242856 CCTACCTTGTTGCTTCCCA 60 198242796 198242814 GCACCAAATAGATGCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036302.2 ENSRNOG00000060862 ENSRNOT00000089655 3 1 1 81 12 37055821 37055840 ACAGAGTGGCTTCTAGACAG 59 37055882 37056832 CATCTATCCCTGTCCATCCTG 60 Novel Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 1 1 1 60 16 58493582 58493600 TCAAACCACCAGAGATGGG 59 58493623 58494260 GTCCACCATATCTCTGCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 3 2 2 95 3 154850624 154850643 GATTACAGCTTCTGCAGCAG 59 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07026032.2 ENSRNOG00000057634 ENSRNOT00000090326 1 1 1 80 16 60080416 60082209 TTGACTCAGTCGGAGAACAG 60 60080355 60080374 TGTTGCAGATGAACCAAAGC 60 Novel Rattus norvegicus 81 AABR07067728.1 ENSRNOG00000052194 ENSRNOT00000081963 3 1 1 80 9 59576310 59581990 GTCATTATGCAGCAAGATTCGA 60 59576251 59576269 TATTGCAGAAGTGGTCGCT 59 Novel Rattus norvegicus 81 AABR07054490.1 ENSRNOG00000061347 ENSRNOT00000090335 3 1 1 82 3 156589900 156589918 GATGGCAGCCTTGAAACTG 60 156581803 156589854 GAAGATTGTCCAGGACCCA 59 Novel Rattus norvegicus 81 AABR07054554.1 ENSRNOG00000059169 ENSRNOT00000080353 3 1 1 80 3 160047036 160047055 ATGCCTCATTTCGTCTTTGG 59 160045980 160046996 GATGGTCCCTTTATCTCTAGCA 59 Novel Rattus norvegicus 81 AABR07036507.1 ENSRNOG00000056419 ENSRNOT00000088173 2 1 1 104 12 45482675 45482694 GTTTATCCTGTGACTGACCC 58 45482758 45487384 CTGATCCGCCTAATTAATTCTG 57 Novel Rattus norvegicus 81 AABR07054597.1 ENSRNOG00000056015 ENSRNOT00000080316 3 1 1 85 3 163006938 163008517 TAAATCAACTGGAGCCAAGAG 58 163008564 163008582 AAGCAGAAGGAGTTGTCAC 58 Novel Rattus norvegicus 81 AABR07036679.1 ENSRNOG00000054596 ENSRNOT00000081300 3 1 1 92 X 259511 259532 TACTAATGCTTGGATCCCTGAC 60 259585 260122 TCTTGTCCACTTGAGCAGG 60 Novel Rattus norvegicus 81 AABR07068035.1 ENSRNOG00000057294 ENSRNOT00000078904 2 1 1 101 9 78487466 78487486 CTAAGGCCCAATTCAAACCAG 60 78487549 78501516 CACAGTACAGAGACCTGGC 60 Novel Rattus norvegicus 81 AABR07068043.1 ENSRNOG00000051933 ENSRNOT00000080398 3 1 1 85 9 79295180 79295342 CTCATCTGAATCAGCTGGAC 58 79295114 79295132 GTGTTTGCATTCTTCAGCC 58 Novel Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 3 1 1 61 1 227289073 227290251 CGGCAATCCAGATCATGTG 59 227290274 227290294 AACTGATGCCAGAATGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026499.3 ENSRNOG00000061042 ENSRNOT00000077817 1 1 1 73 16 79078627 79078645 CTGAAACAGCCAATTGGAC 57 79074479 79074498 TCAACTTTGACTGGAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068107.1 ENSRNOG00000056443 ENSRNOT00000078713 2 1 1 80 9 83786687 83813229 TTAACCAGAAGTCCATTCCTG 58 83786627 83786645 TGGTTCAAACGTGAGACTG 58 Novel Rattus norvegicus 81 AABR07068107.1 ENSRNOG00000056443 ENSRNOT00000078713 3 1 1 80 9 83786688 83813231 TCTTAACCAGAAGTCCATTCCT 59 83786629 83786648 GTTCAAACGTGAGACTGTCG 60 Novel Rattus norvegicus 81 AABR07006389.1 ENSRNOG00000058399 ENSRNOT00000086844 3 1 1 129 1 232345459 232345478 CCTTTCCAAAGGTGACTGAC 59 232316089 232345370 GTTGTGTAGTTTGTTTCCTGAG 58 Novel Rattus norvegicus 81 AABR07026503.2 ENSRNOG00000058205 ENSRNOT00000084677 2 1 1 60 16 79480082 79480100 ACAACCTTCTCAGCATGGA 59 79477533 79477553 GGTCTTGTGAGATAACCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026503.1 ENSRNOG00000051884 ENSRNOT00000087757 3 1 1 81 16 79532526 79539696 TCCTGAAGATTCTAAACGCA 57 79532464 79532483 TTCAGAGAATTGAGAGCAGG 57 Novel Rattus norvegicus 81 AC111257.3 ENSRNOG00000056910 ENSRNOT00000092115 3 1 1 87 16 81082292 81087862 AAGAATAGGGAGTGTTCGCT 59 81082224 81082242 CCTTGTCCATAAGAACGGC 59 Novel Rattus norvegicus 81 AABR07055191.1 ENSRNOG00000052514 ENSRNOT00000078281 3 1 1 82 7 450274 450612 GTCTGACAAGAGATGAAATTGC 58 453651 453671 TATACTCCTTTCCATGGTCCT 58 Novel Rattus norvegicus 81 AC109891.1 ENSRNOG00000061821 ENSRNOT00000091991 1 1 1 80 7 2685064 2685084 CTAGCTCTTTCTCACTTGCTG 59 2683787 2685025 AGCGTATATTTGAGGAAGTGAG 58 Novel Rattus norvegicus 81 AC109891.1 ENSRNOG00000061821 ENSRNOT00000091991 2 1 1 80 7 2685064 2685082 AGCTCTTTCTCACTTGCTG 58 2683785 2685023 ACAGCGTATATTTGAGGAAGTG 59 Novel Rattus norvegicus 81 AABR07039206.1 ENSRNOG00000060462 ENSRNOT00000082606 2 1 1 65 X 71711113 71711132 TTAAGGAAATTGCCCATGCC 59 71710528 71710546 GATACATGCACACGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056014.1 ENSRNOG00000053585 ENSRNOT00000081476 1 1 1 80 7 18340162 18341617 AGAGGTAGGATCTGGTATATCCA 59 18340104 18340122 AGTTATGGGCTGAAGGAGG 59 Novel Rattus norvegicus 81 AABR07006656.2 ENSRNOG00000055788 ENSRNOT00000082007 1 1 1 80 1 244800241 244800260 CATAGGCTTCTGTCTTTGCC 59 244799107 244800198 GGAGTTTCTTGACCAGTGG 58 Novel Rattus norvegicus 81 AABR07039773.1 ENSRNOG00000059472 ENSRNOT00000078766 1 1 1 85 X 84529518 84530011 CTCCACAAGAGATGTCCTG 57 84530056 84530078 GTAGTAGTCTTAGGTTCAGTGTC 58 Novel Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 3 1 1 86 9 106784561 106784579 ATCACGGAGGATGTGTCTC 59 106734761 106784511 AAATGACCGGAAAGTGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006724.1 ENSRNOG00000053728 ENSRNOT00000091108 1 1 1 182 1 250199233 250199251 AAGTACCGCTCGGTAATCC 59 250105951 250199087 GAGATCCTTCGACTGTGGG 60 Novel Rattus norvegicus 81 AABR07006724.1 ENSRNOG00000053728 ENSRNOT00000091108 2 1 1 183 1 250199233 250199251 AAGTACCGCTCGGTAATCC 59 250105950 250199086 TGAGATCCTTCGACTGTGG 59 Novel Rattus norvegicus 81 AABR07056390.1 ENSRNOG00000056018 ENSRNOT00000087111 1 1 1 60 7 23198306 23251327 CAAGGCACGTATTAAATTTCCG 59 23198267 23198287 CAAGAATCTGAAGGTAGGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026936.4 ENSRNOG00000055275 ENSRNOT00000090529 3 1 1 63 17 5694022 5694040 AGAAGGAACTCCTGGTCTG 58 5693041 5693059 GTGTTCAGCAAGACTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC123495.2 ENSRNOG00000055653 ENSRNOT00000091034 3 1 1 81 1 251824334 251825664 GTACTTACAAGGGTGGAACAG 58 251825705 251825725 TTTCAGAAAGTCCTTGCAGTG 59 Novel Rattus norvegicus 81 AABR07026984.3 ENSRNOG00000055805 ENSRNOT00000086573 1 1 1 84 17 8394340 8394358 GACTCTGTGTCTCCCACAG 59 8394403 8395652 TGCATCTTCACACTAGTATCCA 59 Novel Rattus norvegicus 81 AABR07042733.1 ENSRNOG00000053984 ENSRNOT00000089379 1 1 1 87 19 6013280 6013298 AATGTGGGTAGCACATGTG 58 6004071 6004089 AGATCCAGTGGGTAAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056624.1 ENSRNOG00000061113 ENSRNOT00000090732 1 1 1 80 7 33244818 33244836 TGTCATCCTGTAACCACCG 59 33239232 33244774 TTAGGAGTGCAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07027137.1 ENSRNOG00000058611 ENSRNOT00000078319 1 1 1 80 17 15109013 15109031 TGGAACTCTCGACCAATGG 59 15109070 15111285 CCCGTATCCCATTTAGTACTAGAG 60 Novel Rattus norvegicus 81 AABR07056678.1 ENSRNOG00000059437 ENSRNOT00000088749 2 1 1 80 7 35698152 35699127 CTGGACCAGAAAGTTCTAGC 58 35698091 35698109 GGTACTCATCTTCCTGCTG 57 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000084754 2 1 2 225 1 264487887 264487905 CATGGGCTCAGAATGTCAC 59 264488418 264488725 AAGGAAATCGCTGATTCCG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07042989.1 ENSRNOG00000054003 ENSRNOT00000088811 1 1 1 108 19 15609287 15609305 AGCTACAGAACAAAGGCAG 58 15608590 15609215 GCTGACTTTCTATCCCTGC 58 Novel Rattus norvegicus 81 AABR07042989.1 ENSRNOG00000054003 ENSRNOT00000088811 2 1 1 109 19 15609287 15609306 GAGCTACAGAACAAAGGCAG 59 15608590 15609216 GCTGACTTTCTATCCCTGCA 60 Novel Rattus norvegicus 81 AABR07042990.1 ENSRNOG00000060444 ENSRNOT00000078262 3 1 1 82 19 15633796 15635263 CTTCAGAGAACCCGGAAGG 60 15635309 15635327 ACTGACGTATCACTTCCGC 60 Novel Rattus norvegicus 81 AABR07043028.1 ENSRNOG00000059724 ENSRNOT00000082309 3 1 1 87 19 17755224 17756104 GATATGGGTTTGTGCTGGG 59 17756155 17756173 GGAGAACAGAAGACAGGGT 59 Novel Rattus norvegicus 81 AABR07073303.1 ENSRNOG00000055879 ENSRNOT00000088546 2 1 1 80 7 54740584 54740604 AAACAGAGGACATGGAAGAGG 60 54740644 54741721 GATCTTAAGCAGCATCTCTGC 59 Novel Rattus norvegicus 81 AABR07043190.1 ENSRNOG00000055271 ENSRNOT00000084676 2 1 1 81 19 26352704 26353788 CGAAACCTAAAGAGGCCTG 58 26352641 26352659 CTCTCCTCTTCCTCGTTGG 59 Novel Rattus norvegicus 81 AABR07043276.1 ENSRNOG00000054414 ENSRNOT00000082006 1 1 1 80 19 26979283 26979305 CAACTTAGAGATGGAGAACACTG 59 26979344 26981630 AGCAGGTTTCTAGAGAAGGT 58 Novel Rattus norvegicus 81 AABR07069728.1 ENSRNOG00000058251 ENSRNOT00000090767 2 1 1 80 8 38128781 38128801 GATTGGGAATCATTTCAGCTC 57 38128843 38128991 ATGTAGTGGACCCTCTGAG 58 Novel Rattus norvegicus 81 AABR07057436.1 ENSRNOG00000055483 ENSRNOT00000086346 3 1 1 85 7 71103441 71104219 GAGCATCATGAAAGTCCAGG 59 71104267 71104285 TCAACCCTGACTGTATGGG 59 Novel Rattus norvegicus 81 AABR07007078.1 ENSRNOG00000056390 ENSRNOT00000085111 3 1 1 90 1 279688280 279688298 GGCATCAAAGCAGTAGAGC 59 279694933 279694951 TATCACACTGGTCACTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057510.1 ENSRNOG00000058442 ENSRNOT00000080586 3 1 1 80 7 75167502 75169721 CCCATCAGAATGATACAAAGGA 58 75167443 75167463 CACATGTCATTTAGGTTTGCC 58 Novel Rattus norvegicus 81 AABR07043698.1 ENSRNOG00000054321 ENSRNOT00000084956 1 1 1 91 19 36126059 36126606 CCTTCTAGGTACTGTGACTCG 59 36125988 36126006 CTATGGGTCTTCCTGGTGC 60 Novel Rattus norvegicus 81 AABR07028995.2 ENSRNOG00000057886 ENSRNOT00000083856 2 1 1 88 10 1702572 1702590 CAGTTTGAGGAACACCCTC 58 1701686 1701706 CCCTTCTTTACTGGTATTGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 2 1 1 78 8 48308935 48379611 GATGAAATGACAGAAGACGTCTG 60 48308879 48308897 GTAATGCTTCCGTTTGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000082351 2 1 3 80 7 97421459 97462347 AAGGAAGGTCAGAGGATCAC 59 97421398 97421416 TCTGTGCAGATGACGAGAG 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000090860 3 1 3 85 7 97462387 97462407 GAACATGGACTTACTGTTTGG 57 97358537 97462341 TCTAGGAAGAACCTCTGACC 58 Novel Rattus norvegicus 81 AABR07029260.1 ENSRNOG00000058259 ENSRNOT00000090851 3 1 1 82 10 18546765 18546783 TGTGGCCTTGCAAATTGAG 59 18546828 18549649 CACAGTTCAGAAGGTTCTGG 59 Novel Rattus norvegicus 81 AABR07041411.1 ENSRNOG00000059746 ENSRNOT00000077836 2 1 1 81 X 129299459 129299477 AACTGGAAGTGTACAGCCT 59 129254090 129299417 AGTGTACTGCAATTACATAGGC 59 Novel Rattus norvegicus 81 AABR07029470.1 ENSRNOG00000057519 ENSRNOT00000085360 3 1 1 143 10 29635876 29635895 TAAGCAGAGAACAGATCACC 57 29636001 29773011 TTTCCTTTCAACCACCTGG 58 Novel Rattus norvegicus 81 AABR07041514.1 ENSRNOG00000051679 ENSRNOT00000077586 3 1 1 104 X 132099827 132099847 CAATAAGCCAAAGGACATGGA 59 132099655 132099764 CTTGAAAGCCAAATACTGTGTC 58 Novel Rattus norvegicus 81 AABR07029490.1 ENSRNOG00000052198 ENSRNOT00000089508 2 1 1 84 10 30626159 30627593 CTGTAAAGGTTGAATCCTGCA 59 30626095 30626114 AACGCAATTCTATCCAAGCA 58 Novel Rattus norvegicus 81 AC091481.1 ENSRNOG00000060442 ENSRNOT00000090899 1 1 1 97 7 107847306 107861531 ACAGCCTGGAGCTTTACAG 60 107861592 107861610 AAGGGATGCAGTGTACTCC 59 Novel Rattus norvegicus 81 AABR07058383.2 ENSRNOG00000053930 ENSRNOT00000085641 3 1 1 93 7 113338861 113357245 ATGTGAACAGGTCCTTGCT 59 113357300 113357320 GGTCCTATTGGCTTACAACTG 59 Novel Rattus norvegicus 81 AABR07029573.2 ENSRNOG00000057579 ENSRNOT00000078755 1 1 1 84 10 35210847 35213617 GAACCAACGCTGATCATGAG 59 35210782 35210800 CTGGACTCCTTTCCTGACC 59 Novel Rattus norvegicus 81 AABR07058410.2 ENSRNOG00000053874 ENSRNOT00000080383 1 1 1 80 7 114895893 114910215 TGAGCAACAGAAGGGAGAG 59 114895831 114895850 GGAATGTATGAGAACTGCGT 58 Novel Rattus norvegicus 81 AC141334.3 ENSRNOG00000057687 ENSRNOT00000083724 3 1 1 107 10 36628688 36628708 TCTTACAAGGGACCTTGAGAG 59 36612795 36628619 ATCTCTGGAGTGCTTGAGG 59 Novel Rattus norvegicus 81 AABR07058511.1 ENSRNOG00000061168 ENSRNOT00000090660 1 1 1 82 7 121438588 121456064 ACAATGTGAGGCCAGAGAC 60 121438524 121438542 TAGGTGGGTATGGGTACCA 59 Novel Rattus norvegicus 81 AABR07027870.2 ENSRNOG00000061816 ENSRNOT00000085839 1 1 1 81 17 47712631 47712649 GATTTGGATCCGAGTTCCG 58 47711954 47712588 GTTTGTCAAACATGTCCTCTC 58 Novel Rattus norvegicus 81 AABR07042465.1 ENSRNOG00000060122 ENSRNOT00000082615 3 1 1 96 X 157591201 157591429 CTTGGTCTTTCAGGTGCAC 59 157591123 157591141 CAGCTCCTACCACATTCCC 60 Novel Rattus norvegicus 81 AABR07058608.1 ENSRNOG00000060713 ENSRNOT00000081449 2 1 1 79 7 127566844 127566863 AATCCACTGAGAATCGTTGC 59 127572169 127572187 GATGCAGTAAGGTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044415.1 ENSRNOG00000055766 ENSRNOT00000079282 1 1 1 113 20 5261161 5261539 TTGCAGAGATTCTCCACTG 57 5261616 5261634 TTCTCAGCTTCTCCATTGG 57 Novel Rattus norvegicus 81 AABR07028069.1 ENSRNOG00000057788 ENSRNOT00000087652 2 1 1 81 17 55556322 55557235 ACCATGAGACTGACTCATCTC 59 55556261 55556279 CTGTAGCAGTTCAGCAGGA 59 Novel Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 1 1 1 63 2 32633017 32636210 AAGTTCTGCTGGTAAGATCTG 58 32632974 32632993 ACACTCAGGATTCTACAACC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028143.1 ENSRNOG00000057590 ENSRNOT00000083646 2 1 1 80 17 57832246 57837037 CCTGAAGATAAGCGTCTCGT 60 57837080 57837098 TCCATGCATGGGATTTCCT 59 Novel Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 2 2 2 80 17 62609740 62618039 GTCCAATATAAGGCTTGAACAG 57 62609681 62609702 AGAAGTTCTTCATCTTTCCCAG 58 Novel Rattus norvegicus 81 AABR07070714.2 ENSRNOG00000057135 ENSRNOT00000088843 3 1 1 85 8 81465372 81465396 CTATCAAGAATGGATATAACGGGAC 59 81464678 81465330 CTCATCCCATAGCCCTAGAC 59 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 2 1 1 62 8 81635504 81635522 TGAAGGCTACAGGTGATGG 59 81490685 81635478 GAATGGCCCATAAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044804.1 ENSRNOG00000054048 ENSRNOT00000087778 3 1 1 82 20 21191103 21191802 GGAGTGCATTAGGGTTACC 58 21191039 21191058 GGCATAGACAGATGAAAGGA 57 Novel Rattus norvegicus 81 AABR07044820.1 ENSRNOG00000054712 ENSRNOT00000078940 3 1 1 85 20 22265149 22274436 CTGTTACAGGTCTATCTACAAACC 59 22274480 22274498 GCTTCCTTTCCCAAAGGTG 59 Novel Rattus norvegicus 81 AABR07071210.2 ENSRNOG00000054553 ENSRNOT00000082571 2 1 1 82 8 104913751 104913876 AGTTTCCAGAAGACAAGCAC 59 104913921 104913939 CAGTCTGGGAGAGGAACTC 59 Novel Rattus norvegicus 81 AABR07059974.1 ENSRNOG00000057555 ENSRNOT00000078551 1 1 1 82 4 47296197 47296215 CTCTCCTAATCTGCAAGGG 57 47296258 47330976 GCAATTTCACCTGATATGATGG 58 Novel Rattus norvegicus 81 AABR07071299.1 ENSRNOG00000058871 ENSRNOT00000088614 2 1 1 86 8 108470828 108470846 CAGGTGTGATGGGAAGGAG 60 108466723 108466741 GTTCACCAAATCGTGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060062.1 ENSRNOG00000055894 ENSRNOT00000082083 3 1 1 60 4 52015169 52015188 ACATTCCACCTTGTGTTCTC 58 52017661 52017681 AATGAAGATACTCAAGGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071335.1 ENSRNOG00000056720 ENSRNOT00000088673 1 1 1 60 8 110111695 110111713 TCTTCAGCTTAGCTTGTGC 58 110112370 110112388 TCTGTGTCTCAGTCCACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008386.1 ENSRNOG00000058923 ENSRNOT00000077095 2 1 1 81 2 55309130 55309148 GGTGTTCTGTTCTTTGCCC 59 55309192 55340512 GGAGTGAAGATGTCTGTGGA 59 Novel Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 3 2 2 84 20 41022101 41023151 GTTGACTGGTAGATCCCAGG 60 41022036 41022054 GTCATCTTCTCCTAGCGCT 59 Novel Rattus norvegicus 81 AABR07045403.1 ENSRNOG00000058135 ENSRNOT00000087000 1 1 1 80 20 46420554 46421376 CTCAGAGCTCTATGAAGCC 57 46421419 46421438 TCAAATTCATCGTCTTTGCC 57 Novel Rattus norvegicus 81 AC095678.2 ENSRNOG00000053392 ENSRNOT00000087373 1 1 1 60 2 62340826 62340845 CAGCAGGTGAAAGGAAACAC 60 62341468 62341487 GCTTCTTTCCGCATCTTAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC095678.2 ENSRNOG00000053392 ENSRNOT00000087373 2 1 1 65 2 62340829 62340847 CAGGTGAAAGGAAACACGC 60 62341477 62341495 ACACAATGGCTTCTTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC095678.2 ENSRNOG00000053392 ENSRNOT00000087373 3 1 1 66 2 62340828 62340846 GCAGGTGAAAGGAAACACG 60 62341477 62341495 ACACAATGGCTTCTTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060379.1 ENSRNOG00000060461 ENSRNOT00000080619 2 1 1 80 4 70483517 70483538 CCAGAGATGTACCTTAAGTTCC 58 70480350 70483478 GTAGATGAACAACCTGGAACC 59 Novel Rattus norvegicus 81 AABR07060519.1 ENSRNOG00000059013 ENSRNOT00000086066 3 1 1 114 4 77415654 77446386 GTGAGAAGGCAGACAATGAG 59 77415559 77415577 TTCTTCCTCCATCCACAGC 59 Novel Rattus norvegicus 81 AABR07043829.2 ENSRNOG00000051461 ENSRNOT00000078854 3 1 1 94 19 42964791 42964810 TGGCCAATGGTTCAATTCTG 59 42964867 42966573 GGACACCAGAGGACATCTG 60 Novel Rattus norvegicus 81 AABR07043877.3 ENSRNOG00000056500 ENSRNOT00000088864 1 1 1 85 19 45441912 45460463 GCAGAACATCTTGAGAAGATACC 59 45460508 45460526 TTGTCCTGGACATCTTGGG 59 Novel Rattus norvegicus 81 AABR07071619.1 ENSRNOG00000058565 ENSRNOT00000081690 3 1 1 82 8 124414810 124415725 ATGCAGCAGTTTGCATCTC 59 124415770 124415789 TCACTTCTTCCAGGTTCCTC 59 Novel Rattus norvegicus 81 AABR07071620.1 ENSRNOG00000061859 ENSRNOT00000086230 1 1 1 87 8 124506368 124506386 ATTTGCTTCCGGGACTCTC 60 124506436 124526668 TCTTTATTCTGGCTGAGCCC 60 Novel Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 1 1 2 105 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131375136 131375156 AGGAGTCTCAAGGAAGATGTC 59 Novel Rattus norvegicus 81 AC096792.2 ENSRNOG00000055230 ENSRNOT00000079155 2 1 1 81 7 133241879 133252489 GGTTCACCCAAGGTCTACC 60 133252530 133252552 CTGATCTTCGTAGTAGCTTTCTG 59 Novel Rattus norvegicus 81 AABR07071659.3 ENSRNOG00000059340 ENSRNOT00000087790 2 1 1 80 8 126258532 126258552 TGGATATTAAGATGCCTGGGT 59 126252848 126258490 CTCCTTCCGTACTGAGGAC 59 Novel Rattus norvegicus 81 AABR07058699.1 ENSRNOG00000057791 ENSRNOT00000083170 2 1 1 81 7 133648781 133648799 ACCGTTGTGTTGGAAAGAG 58 133648844 133650874 ATTGCTTCTGGGAACTCTG 57 Novel Rattus norvegicus 81 AABR07071697.1 ENSRNOG00000059784 ENSRNOT00000090101 1 1 1 92 8 126966292 126966310 AGGGAGAAGTGGAAAGCTC 59 126966366 126969202 CATTGGTGCCCACATAGAC 59 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000077173 2 1 2 81 7 134986633 134988454 TAGACTGAGATCTCTTCCCGT 60 134988497 134988515 TCTCGTGGAACTGGATTGG 59 Novel Rattus norvegicus 81 AABR07008948.1 ENSRNOG00000055866 ENSRNOT00000085119 2 1 1 104 2 80861339 80861357 AACCAACCTCAGAACCAGG 60 80853596 80853614 CAAAGGTGCTGGTGTAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008970.1 ENSRNOG00000058721 ENSRNOT00000077499 3 1 1 120 2 81722585 81722608 CTATGTCCTCATTTGTTCTTCCTG 60 81729495 81729513 AAGGGTCCACGTAAGATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044063.2 ENSRNOG00000056401 ENSRNOT00000081448 3 1 1 81 19 54532218 54532236 GAAAGAGCAGTAGCAACGC 60 54531291 54532176 TTGTTGTTTGAAGGTACCTGTC 59 Novel Rattus norvegicus 81 AABR07072664.1 ENSRNOG00000060142 ENSRNOT00000083059 1 1 1 179 19 56878623 56879777 GATCTCACAGACCGAACTG 58 56879920 56879938 TACTGCTTAGGTCAGAGGC 59 Novel Rattus norvegicus 81 AABR07072664.1 ENSRNOG00000060142 ENSRNOT00000083059 2 1 1 180 19 56878624 56879778 ATCTCACAGACCGAACTGC 60 56879921 56879940 GGTACTGCTTAGGTCAGAGG 59 Novel Rattus norvegicus 81 AABR07044167.1 ENSRNOG00000051801 ENSRNOT00000091145 1 1 1 60 19 60942738 60942757 TTGCACAGTCTCTTCTCTGG 60 60960581 60960601 CTTTATCCATGAGTGACCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 3 1 1 61 19 61766133 61766152 TTGACCGTCCACATACTCTG 60 61763281 61766112 CCCTTCAAGCTCTTGTTTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC103129.4 ENSRNOG00000057792 ENSRNOT00000090952 2 1 1 110 7 140075934 140075953 GCTTTGGATATCCAGAACCC 58 140073693 140075861 TTTCTGCACAAATGCTGGT 59 Novel Rattus norvegicus 81 AABR07009599.1 ENSRNOG00000051894 ENSRNOT00000084565 2 1 1 90 2 105399948 105400196 TTGCTTGTTGGGAAATCCT 58 105400248 105400268 CTATACAGATCCAGCTCAGTG 58 Novel Rattus norvegicus 81 AABR07010121.1 ENSRNOG00000059906 ENSRNOT00000086707 1 1 1 84 2 124696890 124696908 CTGTCTAGGGCAGGAACAC 60 124696955 124702411 AAAGCTGCTTAATCCAACGG 59 Novel Rattus norvegicus 81 AABR07010144.1 ENSRNOG00000057060 ENSRNOT00000083246 2 1 1 80 2 126274703 126274721 ATTCAGGACTCGGAGTGAG 59 126274762 126278790 CCGTTCTTAATCTTCACTGTGG 59 Novel Rattus norvegicus 81 AABR07010342.1 ENSRNOG00000053123 ENSRNOT00000077766 1 1 1 97 2 132846554 132847601 TGAAATGACAGGTTTGGAGAC 59 132847658 132847678 TGATTTGGATTCAGTTGGCTC 59 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 2 2 2 67 2 156405588 156405606 TCAGGAGCCACTTTAGCAC 60 156399653 156405557 CTCTGCTGGATTTGATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011682.1 ENSRNOG00000058126 ENSRNOT00000080884 2 1 1 89 2 165931233 165931252 TAACACAATGGTACGGTCCA 59 165917593 165931182 GAGGAAAGATTTCGAGTCCC 58 Novel Rattus norvegicus 81 AABR07012047.1 ENSRNOG00000061118 ENSRNOT00000078941 2 1 1 102 2 183810042 183810743 ACCCGAAGATTCTGGTCTG 59 183809958 183809979 AACACTGTGGTTCTTTATCTCG 59 Novel Rattus norvegicus 81 AABR07012065.1 ENSRNOG00000056112 ENSRNOT00000086755 1 1 1 115 2 184693456 184693474 TATCGGCATCATCACCCAG 59 184693058 184693377 ATGCAAGGACCTGGTAGAG 59 Novel Rattus norvegicus 81 AABR07012711.1 ENSRNOG00000054483 ENSRNOT00000084047 1 1 1 80 2 203049465 203049488 GAGGAGTTTCTACTGAAGTATCAC 59 203049527 203049970 TAGAGGCTCAGCTTTGTCC 59 Novel Rattus norvegicus 81 AABR07014125.2 ENSRNOG00000059179 ENSRNOT00000084593 3 1 1 80 14 1536603 1536621 AATCAGATCTGCAGTGGCT 59 1514980 1536559 TTTGGGATTCATGTGCCTG 58 Novel Rattus norvegicus 81 AABR07014306.1 ENSRNOG00000051571 ENSRNOT00000084014 2 1 1 81 14 8903576 8903597 GATACAAACAATCTGCCTACCA 59 8903639 8912495 TGAACGTTGAAGATCCTCG 58 Novel Rattus norvegicus 81 AABR07014350.1 ENSRNOG00000057070 ENSRNOT00000085549 1 1 1 60 14 10957278 10957296 GGTGAAATCAAAGCAACCC 58 10958165 10958186 AACTGTCATAATTTCCAGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AC131411.3 ENSRNOG00000060007 ENSRNOT00000083098 3 1 1 75 14 11367993 11368848 CTATCCAAGTGAACATGTTTCC 58 11367939 11367958 GCATAGCAAGGTCTCATCTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013550.1 ENSRNOG00000054761 ENSRNOT00000086668 3 1 1 93 2 243344246 243344873 TCCAAACCACCCTAGTGTG 59 243344171 243344189 ATCAGAGCTGTAGGCAGAC 59 Novel Rattus norvegicus 81 AABR07013639.1 ENSRNOG00000055914 ENSRNOT00000089942 1 1 1 80 2 248079566 248079587 TGACAACCAGATTATCTCTGGA 59 248079624 248081859 CGGGTCTTATTACCTTACTTGAG 59 Novel Rattus norvegicus 81 AABR07013653.1 ENSRNOG00000059088 ENSRNOT00000090535 3 1 1 80 2 248544276 248545255 CTCTTATCCTTCAGGAGCGA 59 248545295 248545316 TCTGAATCTCTTTCTCATGCCT 59 Novel Rattus norvegicus 81 AABR07013743.1 ENSRNOG00000052422 ENSRNOT00000090154 1 1 1 85 2 254177921 254177942 AAATAAAGAGGAGCAGGATGAC 58 254176234 254177875 ATAGCAGCTCAAATGCCAC 59 Novel Rattus norvegicus 81 AABR07013931.3 ENSRNOG00000061742 ENSRNOT00000080020 1 1 1 80 2 264213046 264215683 CTGTCTTGCCTGAAAGGAG 58 264215727 264215745 GTTAGAGCTGGGTGTTAGG 57 Novel Rattus norvegicus 81 AABR07013931.3 ENSRNOG00000061742 ENSRNOT00000080020 3 1 1 80 2 264212992 264213011 ATCAGGCAACAAAGATACCA 57 264213054 264215691 TCTTGATGCTCCTTTCAGG 57 Novel Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 3 1 1 60 2 220647228 220647246 CTACAAACAGGTCCAGGCA 60 220645951 220645969 ACAACTGCATTTGACTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000007671 3 1 4 83 7 115858881 115860524 TCCTTCTGCAGCACATAGAG 60 115858817 115858835 GAAGCAGGTAGGTGGACTG 60 Novel Rattus norvegicus 81 AABR07063082.1 ENSRNOG00000031342 ENSRNOT00000050986 2 1 1 60 6 17759744 17759762 TCGCCAATCACTTCTTCAC 58 17759785 17759804 TGAGGTTCGTAAACACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000060577 ENSRNOT00000084254 3 1 1 62 8 70702118 70702139 CAGATCGTATAAATCTTTCGCC 58 70702077 70702097 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 1 1 1 60 X 46934424 46934444 AATGTGATGACTCATCAGAGC 58 46934383 46934401 GCAGGATACACAGTACTCC 57 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052112 ENSRNOT00000085973 3 1 1 85 17 37178287 37178306 GATACCATGACCACAAAGGT 58 37178354 37178372 CGAGTTTCCTGCATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053149 ENSRNOT00000082391 3 1 1 65 4 139837334 139837354 GTGTCTGCTGTATCACATGTG 59 139837377 139837399 ACTCAGTATAGACACAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057486 ENSRNOT00000082816 2 1 1 60 4 170258214 170258232 GGGCAAGATCTGTTCTCGT 60 170258253 170258274 ATATGCGGTCTTCAGATAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000080556 3 1 2 82 13 49006129 49006147 GTCTCCCTGTGAATCTGTC 57 49006192 49010593 TTACGGATGGATCTTCACTG 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041852 ENSRNOT00000063605 1 1 1 60 1 252987428 252987447 TGGAAGCTAAACAACGTTGG 59 252987469 252987488 AGCACAGTAAGCCATTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005838.1 ENSRNOG00000020446 ENSRNOT00000027709 1 1 1 60 1 202904737 202904756 CAGAAGCAAACAAACCTGGA 59 202904779 202904797 GCTCTGTCACAGCTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000055091 ENSRNOT00000086834 1 1 1 60 17 14226232 14226253 GAGTTACCTCAGTTGATTGTCC 59 14226193 14226211 GGAAAGCACAGAGTAGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000090573 3 1 2 81 15 36897697 36897715 ATTCCAGTTCTGCCTTCCT 59 36897759 36898029 GTTGGGATGAATCCTACCAG 58 Novel Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 3 2 2 80 4 7149630 7150064 GAATGCCATGCCCTTACTG 59 7150108 7150126 CTTGTCTGCGAAGATCAGG 58 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 3 2 2 86 7 142860724 142861286 TGGATGTTAGCACATGACCA 60 142860657 142860675 ATTCCTTCACTGCTGACCT 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056 2 1 2 86 5 77433381 77433708 ATGTGGACAAACTCAATGGG 59 77433314 77433332 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000058552 3 1 5 80 2 123753599 123753618 AAGGTCACAGTTAGACTCCA 58 123753659 123753783 GAAATATGAGCGACCATCTCC 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000077423 3 1 4 80 1 49425799 49425818 TAGCTTTGAACCTGATCACC 58 49293485 49425757 AGGAAGAGCTATCCAAACTG 57 Novel Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 3 1 1 89 13 77850595 77850613 AGATGCCATTTGGAAGCTG 59 77876040 77876059 AGAAACTCAGATGCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000055658 2 1 3 96 5 164954760 164954885 TCAGTCAGTTCAGACTCCC 58 164954945 164954963 GATTATGGTCGAGGACAGC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054232 ENSRNOT00000085282 1 1 1 81 14 14101124 14101143 AGCTTACGTTTGTAGCTCAC 58 14101062 14101083 TTATATGTTACCCTTTCTCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0055.3 ENSRNOG00000058373 ENSRNOT00000081611 1 1 1 94 20 3398540 3398560 CTGGCTCTTCTCTTTACTCTC 58 3395532 3395550 CTTCCTATCTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042609.1 ENSRNOG00000051666 ENSRNOT00000078232 3 1 1 82 19 275690 276869 AAGAACAGGCCCTACTTCAG 60 276912 276932 TTGTGCAGAATTGACATGACC 60 Novel Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000076090,ENSRNOT00000004278 2 2 2 80 X 72076609 72076630 ACTTCCGTCTGATCTATGACAC 60 72075768 72076568 TGCACAACTTGTACTTGGC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058851 ENSRNOT00000077549 2 1 1 64 2 101369821 101369840 GGACTGCTGTGTAACATGTG 59 101369863 101369885 GCTGAGTATAGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044463 ENSRNOT00000069730 2 1 1 60 1 166886676 166886695 CCATGAACATGCCTGATCTC 59 166886635 166886656 CCCATCCAAATTCTAACTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053180.1 ENSRNOG00000058655 ENSRNOT00000090423 1 1 1 70 3 95731143 95731164 GGTTACCTGATGCTAAGAACAC 59 95731197 95731217 CAGTTTAGTCATCTGTGACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC139391.1 ENSRNOG00000045604 ENSRNOT00000072004 2 1 1 83 18 73563742 73563761 AATAACGTAAAGGGCCAGGT 59 73563676 73563694 CCATGCAAATGCTCGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051675 ENSRNOT00000083238 1 1 1 60 3 38777695 38777714 ACTAGACAGACTGAACAGGG 59 38777735 38777755 AACTAAATGAGTGACCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 2 1 1 97 1 20332054 20332074 CCTGTCCTAATAAGAACTGGG 58 20331976 20331994 GATAAGAAAGCAGCCGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 2 3 4 134 9 81644546 81644564 CAAAGCCAAGGATCACCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 ENSRNOG00000031519 ENSRNOT00000048715 2 1 1 60 17 81558254 81558272 CAAGTTTGTGATGGGTGTG 57 81558212 81558233 ATTGCTGACAATCTTGAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058060 ENSRNOT00000086965 2 1 1 60 7 20742906 20742926 TTTGTGCTCTGACAGAATCAC 59 20742944 20742966 GAATTAGCAGTAATCACTCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056000 ENSRNOT00000091660 3 1 1 60 X 34159464 34159485 TTGATCACAGTACATGAGTAGC 58 34159505 34159524 CTTTCAAGAGCTTGTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020058.1 ENSRNOG00000048245 ENSRNOT00000073312 1 1 1 60 13 12662278 12662297 AGGAAAGAAAGCTCTTCCCT 59 12662320 12662338 GATCATCTGAGGATGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043040.1 ENSRNOG00000056923 ENSRNOT00000080685 1 1 1 60 19 18820052 18820073 CTTTAGTAATGCTTGGTTGCTC 58 18820088 18820112 CTCCTTTCTAAATCAGTTCCTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000088581 1 1 6 109 10 74871647 74877552 TGGATGACAAGGAGTACGTG 60 74877624 74878027 CAGACCAGATTCTCCTGCC 60 Novel Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 2 1 1 60 2 131957275 131957296 ACATTCTTTGCTATTCCTCTGC 59 131957234 131957254 GCTTATAAATGGCACTGACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 3 1 1 66 1 136075099 136075117 CACCTAGACTTGGTGTGGT 59 136075144 136075166 GAGTAATTTAGGCAGAAGGTACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 1 1 1 60 9 4107560 4107578 AGACTTTCCTCAGCCTGTG 59 4107659 4107682 CGTAGTTTCTATCAGTATTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 1 1 1 60 18 2189054 2189078 GAAGTACAAGTAGGTTCCTTAAGAG 59 2195777 2195795 AGCACTCAACCTCTTCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 3 1 1 107 10 78686120 78686140 TCTTTATTCAGTGCCTCAGGA 59 78687057 78687075 GACAACGACGATGTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 1 1 1 60 10 79210657 79210675 GACTCCCAAGGACGTAGAG 59 79208787 79208805 TGATGCCAGGAACTACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 3 1 1 61 5 85124139 85124157 CCCGAATCGTGATTCTAGC 58 85137788 85137809 AGGATAGTTGTTTGCATAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 2 1 1 86 1 30666704 30666723 CTACACAGTCCACCAGTGAG 60 30666151 30666169 AAAGTAAGATGCCCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 3 2 3 90 1 47513247 47513265 CACTTCATCCGCATTACCC 59 47513319 47513703 TTCTTCTGAACGTGGACCC 60 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 2 1 1 60 5 143851543 143851564 CAGAAGACATGATCTTGGAGAC 59 143852402 143852422 TCTCTTCTTTACTGGTAAGGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000083718 2 1 2 124 3 4734109 4734221 AGTCTACCATGCTGATGGG 59 4734773 4734792 GTACTGAGGAGTGGGTTCTG 60 Novel Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 2 1 1 61 6 97206216 97206236 GGACCATGGATTAAGCAACAC 60 97205293 97205311 CTACAGAGGGAGGGATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492 3 1 2 85 9 605115 605253 CATCTCCAGCTTGTGTATGAG 59 605050 605069 TGGTCAATGTACTTCTTGGC 58 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 1 2 2 98 6 129000923 129000941 CTGAGATTGTGATCGCCAC 59 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000084305,ENSRNOT00000091301 2 2 2 99 6 129000924 129000942 CCTGAGATTGTGATCGCCA 60 129000586 129000861 CTATGACCAGGCACCTGAG 60 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 2 1 2 80 1 131385501 131385759 AAATGATAGGAGGGAGATGGAG 59 131385442 131385464 AGACTGTAGAAAGACATCTTCCC 60 Novel Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 3 1 1 62 3 125025761 125025779 ATCAGTGCTTACACAGCTG 58 125023191 125023210 ACTTTGTGTCCTCACTTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 3 1 1 61 16 58777739 58777758 AGCCAGGATAGAAGAGTCTG 58 58774437 58774456 TTCTTGCCATTCCCATTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 3 1 1 60 16 64924503 64924522 TATTCACTGACTGTCAGCAG 57 64923426 64923447 ACAGGATTAGTAAATACCCTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 1 1 1 60 12 46494630 46494649 AGCAAGATCGTGAAGATCTC 58 46495851 46495869 CCTACCGATGCTCTAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 1 1 1 60 1 227289047 227289068 TCTAAAGGCAGAGATCAAAGTG 58 227290249 227290267 CAACACCATCACAGCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 1 1 1 67 16 78903739 78903758 GAGGTGGAATTTAGGTCCTG 58 78880272 78880290 GTCTCCTCTGTGTAAACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 3 1 1 60 9 86775909 86775927 ACAGAGACCATGCTTAGCA 59 86781384 86781403 GTTCCTTGGGAGTATCTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000084598 2 1 2 80 16 87443361 87470791 CACCTGAGATTTGCCTCCA 60 87470835 87470853 ACCTAAGGCTCTCGTACCT 59 Novel Rattus norvegicus 81 AABR07040252.1 ENSRNOG00000057853 ENSRNOT00000087742 1 1 1 60 X 96469349 96469368 TCCAGTCAGGTAGTTCATCC 59 96466462 96466480 GGACCTGCTGATTTGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 3 1 1 70 17 18866590 18866608 CTGAACTACATCTGAGGGC 57 18866923 18866941 ACTTTGGGAGAACTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 2 1 1 71 7 36160485 36160503 TTCCAGAAACTGCTCCCTG 60 36164774 36164793 GATATGGTCATGTGGATCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 3 1 1 61 8 12822965 12822983 CTCAGCCAATGAGTAGCGT 60 12794641 12794660 CTCTCCATCTGCTCTGAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 1 2 2 80 X 113550887 113550905 CCTGCAAACAACTATGGGT 58 113550949 113581954 CTGAGGAGGTGTCTTTCCA 59 Novel Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 1 1 1 60 7 105102041 105102060 TGTTAGTCATCTTCTGAGCC 57 105122128 105122147 AAGATGGTTCTTAGCTCAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 1 1 1 62 10 30555462 30555483 GAATTTAATCTGCAACTGCCAG 59 30546839 30546859 GCAATGGTACAGTGTAATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 1 1 1 60 X 155797945 155797963 AGTACTTTGACCAAGCCAG 57 155796431 155796449 TCTGTGGACTCTTCATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 2 1 1 60 17 79978366 79978387 CTAGACAACATGGAGACTTCGA 60 79964656 79964674 GCAGCTGCTTACTGATCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 1 1 1 68 Y 2027469 2027487 ATGCTGTGACTCTTCTGGT 59 2038673 2038694 ACTTTACTCAATCTAGGACAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 2 1 1 79 2 149090437 149090456 AGTTCTGCAGTTTGGATGTC 59 149096545 149096563 TCCAAATGACAGTGTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 1 2 2 81 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647893 211647912 TTAACTGCTTCATGCCTGTC 59 Novel Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 3 1 1 61 2 254280095 254280114 TTTCTTGGAGGAAATCTGCC 58 254285562 254285580 GCACTGGAGACAACTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd5 ENSRNOG00000029971 ENSRNOT00000048767 1 1 1 60 MT 12420 12438 CATCCATGACTCCCATCAG 57 12461 12480 TTGAGTGTAGTAGGGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499530 ENSRNOG00000031115 ENSRNOT00000049679 3 1 1 125 2 48966162 48966181 TGGTTGAATTGGAAGATCCA 57 48966268 48968456 CAACTGTGATCCAAGATCGT 58 NA Rattus norvegicus 81 LOC100362724 ENSRNOG00000038965 ENSRNOT00000015146 1 1 1 60 X 20563672 20563690 ACAGACTACGAAGGAGCAG 59 20563711 20563732 ATTCCTCTTTCACCAATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0211.1 ENSRNOG00000050700 ENSRNOT00000074085 2 1 1 60 X 21032874 21032892 GACAGACTACGAAGGAGCA 59 21032914 21032934 TTCCTCTTTCACCAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa9 ENSRNOG00000021134 ENSRNOT00000028693 2 1 1 80 2 196477305 196477324 GATGTACTGACCAATCGCAG 59 196477037 196477264 CAATAGATCCTGTTTGGTGCG 60 NA Rattus norvegicus 81 LOC680190 ENSRNOG00000047829 ENSRNOT00000051551 2 1 1 60 X 43781097 43781115 TCCTTCCCACCATCTTTCC 59 43781055 43781073 TGGCACTTCCCATCTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 2 2 3 85 15 35032721 35032739 TAAGGGTCATCTGTGGTGG 59 35032785 35033323 GATGACTGTGATTTCTCTTCCT 58 NA Rattus norvegicus 81 Olr1687 ENSRNOG00000046708 ENSRNOT00000074145 3 1 1 60 20 650470 650490 AGCCTAAGGAACAAGGAAGTC 60 650510 650530 GAACTTTCTTCAGACCCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fsip2 ENSRNOG00000051199 ENSRNOT00000089165 2 1 1 80 3 70355141 70356379 AACACGTTTCAGAAATGCCT 59 70356420 70356440 TTGACAGAGTGGAAGATACCT 58 NA Rattus norvegicus 81 LOC100365012 ENSRNOG00000049037 ENSRNOT00000052052 3 1 1 60 20 1165188 1165206 ATGTAGCTGTTTGCCTTCC 58 1165230 1165248 CACCTACACTTTCTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 2 2 2 83 2 52505527 52507205 GAATGCCAGGTCTGTAACAG 59 52505463 52505483 GTTGGGTTTATCTCCAGTGTG 59 NA Rattus norvegicus 81 Sgcg ENSRNOG00000014603 ENSRNOT00000019639 2 1 1 84 15 41552383 41556143 CCATTTCAAGACCTTAGGTTGG 59 41552320 41552338 CAGCACGAGCTTCAATGTG 60 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847,ENSRNOT00000080677 2 2 2 80 2 56112343 56112364 AGATCATATTACCCATGACCCT 58 56112049 56112302 ACTTCTCCTTCACCCACTG 59 NA Rattus norvegicus 81 Btbd19 ENSRNOG00000042163 ENSRNOT00000067675 2 1 1 86 5 135993010 135993145 GATACTCTGTGCTGGAGGT 59 135991249 135991267 CCTTCACCACAAACTCCAG 58 NA Rattus norvegicus 81 Tmem89 ENSRNOG00000031141 ENSRNOT00000049240 2 1 1 60 8 117661263 117661281 GCTAAGGTGGCTAAGGGTC 60 117661692 117661710 GTTTCCAGTGTTTGCAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Htr1b ENSRNOG00000013042 ENSRNOT00000017411 1 1 1 60 8 89130161 89130180 GGCTTTCTATTTACCCACCC 58 89130120 89130138 GGCTTCCACATAGATACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nme6 ENSRNOG00000020721 ENSRNOT00000028125 1 1 1 80 8 117923729 117923747 TCAGACTCTCCAACTCACG 59 117923791 117925336 TGTTGATGAACAGCCTCCA 59 NA Rattus norvegicus 81 LOC680520 ENSRNOG00000027997 ENSRNOT00000033716 1 1 1 80 11 44072072 44072092 ATGCACAGATGCTTTGAACAG 60 44072133 44072580 CTGAAACTGTAGGCCATTGC 60 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 2 3 3 80 2 216507973 216509445 GACGCCTGAAACATACAGC 59 216505040 216505059 TCAGCTGATGGAGTCTTGTC 60 NA Rattus norvegicus 81 LOC100912529 ENSRNOG00000049347 ENSRNOT00000075742 3 1 1 60 5 137565232 137565251 TCATCTTGCTTCTGATCCCA 59 137565268 137565292 GCTATAAAGATCCGAACATATGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687401 ENSRNOG00000029050 ENSRNOT00000061413 1 1 1 97 5 24725894 24725912 TTGCTCTCCACAAGATGCA 60 24725971 24727109 GGACTCAAAGTTGTTCCTGTC 59 NA Rattus norvegicus 81 Fcrl2 ENSRNOG00000016164 ENSRNOT00000021938 1 1 1 80 2 186601051 186601070 GATACTACTGCACTGCAGAC 58 186600607 186601008 GCAACACTGGAACTTTCAC 58 NA Rattus norvegicus 81 Mir3597-1 ENSRNOG00000035551 ENSRNOT00000053674 3 1 1 61 2 187582840 187582862 CTAGCTTTATGAAGACTCCACAC 59 187582801 187582821 GGGTTGGTTGTTATCTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem202 ENSRNOG00000026112 ENSRNOT00000030199 1 1 1 80 8 64304992 64305210 AATACCAACAGCCTACCCT 58 64304930 64304951 TGTAAGCCTCACTCAAATACTG 58 NA Rattus norvegicus 81 Mcpt1l4 ENSRNOG00000031304 ENSRNOT00000045948 1 1 1 80 15 34928496 34928520 TGGAAGGATGAGATCAGGAG 58 34928956 34928976 CGTCCATGAGATACAATACCA 57 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000066940 3 1 2 87 11 35098840 35099370 AGTTGACAAGACTGACAGCT 59 35098772 35098790 AACTTTGGCTGGTGAATGG 59 NA Rattus norvegicus 81 LOC686967 ENSRNOG00000046235 ENSRNOT00000074881 3 1 1 60 1 229100876 229100897 GTATGATTGTGCTGATTCTCTG 57 229100916 229100936 GCAAGGAAACAATACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb ENSRNOG00000058566 ENSRNOT00000089411 3 1 1 107 20 5185420 5185444 CTGTGGATTCTATACTAGATCCAGG 60 5185509 5185881 TCATCCAAGCGCCTATGAG 60 NA Rattus norvegicus 81 RGD1307262 ENSRNOG00000016973 ENSRNOT00000046311 1 1 1 80 1 46322899 46322917 CTTTATGCCTGGTGTGGAG 58 46303332 46322855 CCGAAAGTCCTTCATGCTG 59 NA Rattus norvegicus 81 Sowahd ENSRNOG00000049392 ENSRNOT00000075314 3 1 1 60 X 123663460 123663480 AAATGCACCTCAAGTGTATCG 59 123663496 123663520 GAGATGCCTCTTTGTAGTTTATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr15 ENSRNOG00000039680 ENSRNOT00000002258 1 1 1 82 11 44002947 44002965 CAACGCAACTTCAGGTCTC 59 44003009 44003176 AAGCTATGACAGATGAAGGCA 60 NA InUTR Rattus norvegicus 81 Gpr15 ENSRNOG00000039680 ENSRNOT00000002258 2 1 1 83 11 44002947 44002965 CAACGCAACTTCAGGTCTC 59 44003010 44003177 AAAGCTATGACAGATGAAGGC 59 NA InUTR Rattus norvegicus 81 Taar7b ENSRNOG00000046302 ENSRNOT00000021559 1 1 1 60 1 22518745 22518763 GACTCCATCATTGACGCCT 60 22518703 22518726 CTAGGATTTCATACACATACGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr119 ENSRNOG00000033350 ENSRNOT00000044641 1 1 1 60 1 168795205 168795226 CGGATCTTGGAGTAACATTGAC 59 168795166 168795186 TGATTTAACCACAGTACACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp8b1 ENSRNOG00000019481 ENSRNOT00000026355 3 1 1 60 8 130549041 130549059 TCGGGTGTCTCCATATGTC 59 130548999 130549019 GGACAAAGGTCTTCATCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 1 1 1 63 2 193429253 193429271 AGTACTCACGAAGCAGGAG 59 193429298 193430050 CTTCACTATGACGTCGGCA 60 NA DesignNoJunction Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 3 1 1 64 2 193429252 193429271 AAGTACTCACGAAGCAGGAG 60 193429298 193430050 CTTCACTATGACGTCGGCA 60 NA DesignNoJunction Rattus norvegicus 81 Olr96 ENSRNOG00000015832 ENSRNOT00000021191 1 1 1 60 1 168489127 168489145 AGGCATCCCTGGTTATGAG 59 168489169 168489187 GTAGATGAGGCAGAATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000014761 2 1 2 85 2 45813980 45858986 AAGAACTTGGAGGAGCTGAC 60 45859030 45859052 GCTGTCTAATACGAATATGACCC 59 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095,ENSRNOT00000091612 3 3 3 82 15 42661444 42661463 CATAACTCCACAGGATGCCT 60 42661508 42664200 TTGTTGGTCGAACAGTCCA 60 NA Rattus norvegicus 81 Ercc3 ENSRNOG00000013180 ENSRNOT00000018422 1 1 1 80 18 25059212 25059232 AGAAAGGATGCAGATTCTCCA 59 25059272 25061200 GATGTGTCACCAACCTTAGAG 59 NA Rattus norvegicus 81 Tbc1d23 ENSRNOG00000001642 ENSRNOT00000002240 3 1 1 80 11 45452268 45455632 GAGGAATACGACACAGATGAG 58 45455674 45455692 CCAGGTCTGGATGTTTACG 58 NA Rattus norvegicus 81 Olr347 ENSRNOG00000057869 ENSRNOT00000089953 1 1 1 60 1 229877643 229877666 CTTTCTTCTCATCTACACCATCAC 59 229877680 229877703 GACAATCAGTAGAATCAATCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc1 ENSRNOG00000017839 ENSRNOT00000024113 3 1 1 82 1 80262036 80262054 ACTACATCCATGAACGGCT 59 80262100 80263566 GGGATCTTTCACATCCACC 58 NA Rattus norvegicus 81 Ecsit ENSRNOG00000014128 ENSRNOT00000019115 2 1 1 80 8 23089075 23089094 CATCTTTGTCCACTACCCAC 58 23088092 23089032 TTGGGCATAACTCCATGTC 58 NA Rattus norvegicus 81 RGD1306233 ENSRNOG00000010152 ENSRNOT00000013473 2 1 1 80 3 7050972 7050991 TGTTTCCATGTACAGGACCA 59 7048177 7050933 GGATAATATGCTTTCGGCATCTC 60 NA Rattus norvegicus 81 Olr263 ENSRNOG00000047215 ENSRNOT00000071859 3 1 1 60 1 172625556 172625574 TTGGCTTCTGTTGACATGG 58 172625595 172625616 GGAAGTTGATAAGCATATTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb11 ENSRNOG00000001613 ENSRNOT00000034940 2 1 1 80 11 47087270 47087288 TGAGCTATGCGTCAAGTCC 60 47085549 47087228 AAGTACTTGGACTCTCCTGTG 59 NA Rattus norvegicus 81 Mir370 ENSRNOG00000035615 ENSRNOT00000053738 1 1 1 60 6 133739933 133739951 CACGTCTCTGCAGTTACAC 59 133739975 133739993 GACAGACAAACCAGGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr313 ENSRNOG00000029226 ENSRNOT00000043996 2 1 1 60 1 213427608 213427626 TGTGTTCTGTGCCTATGTC 58 213427648 213427668 GGAAACTTTGCTTCTTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sepw1 ENSRNOG00000013548 ENSRNOT00000018559 3 1 1 104 1 77533617 77533753 AAGCCCAAGTATCTCCAGC 60 77533350 77533368 CACTTCAAAGAACCCGGTG 59 NA Rattus norvegicus 81 Cdc42ep5 ENSRNOG00000018616 ENSRNOT00000025110 2 1 1 60 1 73719282 73719300 TACTGTCCTTCCACCTGGA 60 73719324 73719342 TCCATGACGCCTAACACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp1b1 ENSRNOG00000040287 ENSRNOT00000082017 3 1 3 81 6 2314980 2315000 TTACAGACATCTTTGGAGCCA 60 2311887 2314938 ACATCCGGTCTGGTAAAGAG 59 NA Rattus norvegicus 81 Fbxo11 ENSRNOG00000016396 ENSRNOT00000021998 3 1 1 80 6 11682310 11683361 CAACAGTTGTATAAAGGTGCAC 58 11682251 11682270 TCTCCCTTTGTATCTGGCAG 59 NA Rattus norvegicus 81 LOC681382 ENSRNOG00000038257 ENSRNOT00000058235 3 1 1 60 X 57995760 57995779 CCTTAAAGCAGAAGAAGCCG 59 57995802 57995820 AAATGGATCAGGAGGTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgd2 ENSRNOG00000000528 ENSRNOT00000041665 1 1 1 81 20 6976567 6976588 CAAGAATAAGCTATCGAGTGGG 59 6976630 6977340 CTCAGGTTCCTGAGTCTCC 59 NA Rattus norvegicus 81 Mageb3 ENSRNOG00000038269 ENSRNOT00000044910 2 1 1 60 X 54843259 54843280 TGATGAGGCTTTGAAAGATGAG 59 54843220 54843239 TGTGTCACCAAATGTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 3 2 2 80 X 13277354 13278850 GATGCTGAAACTGTATGCCA 59 13277293 13277314 CGAAACACAAATCCAGAAATGC 60 NA Rattus norvegicus 81 LOC288978 ENSRNOG00000045570 ENSRNOT00000071437 2 1 1 81 13 36200024 36205223 CCACAAAGCAAAGACAAATGAG 59 36205265 36205283 CTTCAGCGTTCTGTCTTCC 59 NA Rattus norvegicus 81 LOC100911849 ENSRNOG00000045969 ENSRNOT00000072508 1 1 1 60 8 17965270 17965291 TGGTTATCATCTTGGCTATCAG 58 17965231 17965249 AGGAAGAGGTACATGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsk ENSRNOG00000021155 ENSRNOT00000028730 2 1 1 80 2 196660054 196660072 TGCCTTCCAATATGTGCAG 58 196660115 196664027 ATACAACTTTCATCCTGCCC 58 NA Rattus norvegicus 81 Acbd5 ENSRNOG00000017642 ENSRNOT00000076964 2 1 1 80 17 89904436 89904456 TGACAAGTGACTCAGATAGTG 57 89900394 89904398 GATCACCACCTAAGTAATACTCC 58 NA Rattus norvegicus 81 Olr106 ENSRNOG00000015893 ENSRNOT00000021273 2 1 1 60 1 168611635 168611653 CACCAACTCCATCTTCTCC 58 168611593 168611611 GTACACTGTCTCCAACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdga1 ENSRNOG00000000536 ENSRNOT00000048845 3 1 1 80 20 8522738 8523672 AGCCTGTCAGACAATACCT 58 8522676 8522694 CCAGTCGAAGTTGTCTGTC 58 NA Rattus norvegicus 81 Dmpk ENSRNOG00000015085 ENSRNOT00000020428 1 1 1 80 1 79992787 79993045 AATTGTGCATTACAGGGAACAC 60 79993086 79993104 CCACGAATGAGGTCCTGAG 60 NA Rattus norvegicus 81 Rsph3 ENSRNOG00000018762 ENSRNOT00000067916 3 1 1 82 1 47446829 47449408 GGATGTGCAGACAGAATTATACC 59 47446769 47446787 GAAATGCATCTGTCTGGCA 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 2 2 2 80 2 263212271 263348580 ATCTCACTGTGCAAGTTCCA 60 263348623 263348641 TAAGGGTGACGTTGGTTCC 60 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076641 3 1 2 80 X 58187093 58187158 AACTCTAAAGATCCACTCGCA 59 58187033 58187053 AATCTTCAGAGATGAGCACCT 59 NA Rattus norvegicus 81 Rn60_X_0604.2 ENSRNOG00000060566 ENSRNOT00000042809 1 1 1 60 X 59762118 59762138 GTAAGATACTTCCGAACGTCC 58 59762078 59762098 GCTTCAGACCAAATGATTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oosp1 ENSRNOG00000020998 ENSRNOT00000028498 1 1 1 80 1 228033092 228050081 TTCTGCACAGTCGGTATCC 60 228033030 228033048 CTACTGCCCATTCAGGAGG 60 NA Rattus norvegicus 81 Ntrk1 ENSRNOG00000013953 ENSRNOT00000018961 1 1 1 80 2 187151514 187153687 AGCCACCATGAAGAAATCTG 58 187151453 187151474 TTCTTCTTGTTGAGATCACTGG 58 NA Rattus norvegicus 81 AABR07070032.1 ENSRNOG00000034066 ENSRNOT00000044608 2 1 1 80 8 44992727 44992999 GGATAAGAACCAGACTGCG 58 44993042 44993061 GTGATGATAGGGTTGCAGAC 59 NA Rattus norvegicus 81 Rn60_X_0616.3 ENSRNOG00000032361 ENSRNOT00000051547 2 1 1 80 X 60929660 60929678 TTTCTGGAACACATGTGGC 59 60929721 60929752 ACAGACTAGGAAGCAGATGC 60 NA Rattus norvegicus 81 Pip5k1b ENSRNOG00000015232 ENSRNOT00000068645 1 1 1 82 1 242233786 242244906 AATTCAAGCTCTGAAGGCCT 60 242233723 242233741 ACAGAATCTCCTGGGAGGT 60 NA Rattus norvegicus 81 Rn60_17_0410.2 ENSRNOG00000051206 ENSRNOT00000077042 2 1 1 80 17 39106296 39108784 GAGCCATCATCTATTGGTGG 58 39108827 39108845 GAGTCGCTGTTTACCTGTC 58 NA Rattus norvegicus 81 Tdh ENSRNOG00000011342 ENSRNOT00000015353 1 1 1 80 15 46671309 46671330 CTCTGTGTTCAAAGACCTAGGA 60 46670001 46671272 CCGGTAATAATAGTACTCTCCCA 59 NA Rattus norvegicus 81 Git2 ENSRNOG00000001190 ENSRNOT00000045946 1 1 1 80 12 47611031 47611049 GTAACTGAGACAACCGTCG 58 47611092 47612056 TAATTTCTGTCTGCCCTGGT 59 NA Rattus norvegicus 81 Adipor2 ENSRNOG00000007990 ENSRNOT00000010556 2 1 1 80 4 151421877 151425374 GTTTGTTTGTAAGGTGTGGG 58 151421816 151421835 AAGTCATTGTCCTTAAGCCA 57 NA Rattus norvegicus 81 RGD1563159 ENSRNOG00000042727 ENSRNOT00000064799 1 1 1 80 18 30801816 30801962 AACTACTTTAAGGTGCCGAG 58 30801755 30801773 GGTATGATACAGCTGCGTG 59 NA Rattus norvegicus 81 Mir3558 ENSRNOG00000050479 ENSRNOT00000073156 1 1 1 60 6 10992714 10992733 GTCCATAGAAGTCATCCCAC 58 10992756 10992774 TAGAAACCCTCCACAGTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3558 ENSRNOG00000050479 ENSRNOT00000073156 3 1 1 60 6 10992719 10992738 TAGAAGTCATCCCACAGTGC 60 10992759 10992779 TGACATAGAAACCCTCCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam168a ENSRNOG00000018873 ENSRNOT00000025827 1 1 1 80 1 165854235 165859819 ATGCTCCAGAATTTCAGTTCC 59 165865016 165865034 AGGAAGAGGAGTTCTGTGG 58 NA Rattus norvegicus 81 Zfp777 ENSRNOG00000033639 ENSRNOT00000038517 1 1 1 90 4 77700169 77704260 GTCTCTATGGACTATGCAATATCC 59 77700102 77700120 CAGAGTCCTCTTGCTCCTG 60 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 3 2 2 80 X 22410691 22410951 CTAGGAAAGGAAAGTAGAGCCA 59 22410632 22410652 GTCTTCAACGGCATAATGGTC 60 NA Rattus norvegicus 81 Ccdc147 ENSRNOG00000053565 ENSRNOT00000077738 2 1 1 80 1 267734059 267734954 TAGACCAGGTCATCAGTGAG 58 267734997 267735015 TCTCATAGAGCAAGGCCAG 59 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000085146 2 1 2 136 6 55698702 55698722 CCTTCAATCAATAGCATTCGG 58 55694613 55695549 GGTCATCAAATACTGTCTTGTC 57 NA Rattus norvegicus 81 Sfi1 ENSRNOG00000018412 ENSRNOT00000036848 2 1 1 80 14 83365528 83365546 GTCTCGAGTTGAACAGAGG 58 83363870 83365485 AGGACTGTCATCCTGTAGTG 59 NA Rattus norvegicus 81 AABR07049783.3 ENSRNOG00000060798 ENSRNOT00000071106 1 1 1 80 5 137738862 137738880 TATGACAGGTACATCGCCA 58 137738799 137738818 TGTAACCATCTTGGCACAC 58 NA Rattus norvegicus 81 Slc26a5 ENSRNOG00000011616 ENSRNOT00000015733 1 1 1 80 4 9851022 9851040 GGGCTTGGACTATGGACTG 60 9851084 9854354 GTGTAGCTCGGACTCTGTG 60 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 2 2 2 80 1 7314032 7316425 CAACAGATGTTCTGGAAAGAC 57 7313972 7313991 GCTTTAAGGAGTTGAAGGGT 58 NA Rattus norvegicus 81 Syt12 ENSRNOG00000019306 ENSRNOT00000026152 3 1 1 80 1 219695934 219695953 CTGAAGCTGTCTGTTCTGGA 60 219694331 219695892 ATCAGCAGCCTTATTCTGGT 59 NA Rattus norvegicus 81 Opn3 ENSRNOG00000003778 ENSRNOT00000005072 3 1 1 81 13 93719599 93746550 CCTCTTTGGGTTTGTTTCCA 59 93719537 93719556 GATCACTCTGGCATGTACCA 60 NA Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 2 2 2 74 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882503 100882798 TGTTCAATGGTCTCTTTGGT 57 NA DesignRelaxed Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675,ENSRNOT00000014030 2 3 3 80 4 156412931 156412952 GGAGTATCTGGAACAGTCTGAG 60 156412455 156412890 TCATCGTACCATCGGTCAG 59 NA Rattus norvegicus 81 Lce1d ENSRNOG00000046788 ENSRNOT00000012464 2 1 1 71 2 193042244 193042262 AGACTCCAAAGTGTCCTCC 59 193042191 193042209 TACAGCAGGAAGACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360439 ENSRNOG00000029560 ENSRNOT00000043110 1 1 1 74 12 13461896 13461914 ATATGATCCGGGAGGTGTG 59 13461840 13461858 TGTCCTTGGACACCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdrd6 ENSRNOG00000025693 ENSRNOT00000038239 3 1 1 81 9 19923734 19923754 CTTATTGGCACCCTTGTTCTC 59 19923797 19925802 CTGTAGCTCAACTGCTGGT 60 NA Rattus norvegicus 81 Slc10a1 ENSRNOG00000005794 ENSRNOT00000007825 2 1 1 80 6 104624006 104630890 CATGAACCTCAGCATCGTG 59 104623944 104623966 CTGTAGACGTATAAGAGGAGTGG 60 NA Rattus norvegicus 81 Olr330 ENSRNOG00000029943 ENSRNOT00000051381 1 1 1 60 1 228628621 228628639 AACAGCCATGACCTATGAC 57 228628660 228628681 GATTGATGAGTAGAGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nipsnap1 ENSRNOG00000008374 ENSRNOT00000011158 1 1 1 80 14 85132233 85132398 ACCAACAAGGAGTACCTAGAG 59 85132439 85132458 GAATTCCAGAAGCAACTGGT 59 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862,ENSRNOT00000003428 2 2 2 80 13 35641267 35641397 GGAATACAGAGGTCAGACAC 58 35641206 35641224 TCAACGCCATACATTTCCA 58 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355,ENSRNOT00000085462 3 2 2 82 16 19047168 19047187 GAACATGGTGGCAGTATTGG 59 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 AABR07016166.1 ENSRNOG00000050592 ENSRNOT00000070839 1 1 1 80 14 94776665 94776683 AGCGACATCTTAACGGGTC 60 94776726 94776982 AAGTACACGAAAGGCTTTGC 60 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091,ENSRNOT00000012295 2 2 2 80 8 63423928 63433252 TTGAAGTGAAAGCTGCTCC 58 63433294 63433314 AATACATCATAGCATCCTGCC 58 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 3 2 2 80 X 39835628 39850825 AATCATCAGACTGTGGTGG 57 39850867 39850887 AGTTAAGATAACACCACTCGG 58 NA Rattus norvegicus 81 Mir433 ENSRNOG00000036497 ENSRNOT00000054605 3 1 1 60 6 133712339 133712357 GAGAAGTACGGTGAGCCTG 60 133712379 133712399 GATCCTTCTCAACACAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000076380,ENSRNOT00000015578 1 3 5 80 7 115821780 115821799 TGGTAGATCGACAAGAGGAG 58 115821842 115823249 CAAAGTCGGTCATGAGCTG 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000076380,ENSRNOT00000015578 3 3 5 80 7 115821782 115821801 GTAGATCGACAAGAGGAGGG 59 115821844 115823251 CTCAAAGTCGGTCATGAGC 59 NA Rattus norvegicus 81 Hey2 ENSRNOG00000013364 ENSRNOT00000018718 2 1 1 81 1 29191303 29193221 GAACAATTACTCCGGGCAC 59 29193262 29193284 CTTTCTTGCCATAATCTGAGAGG 59 NA Rattus norvegicus 81 Calr ENSRNOG00000003029 ENSRNOT00000004091 3 1 1 80 19 25958999 25959185 AAATCCTGAATACAAGGGCG 58 25958938 25958956 ATCTCTGGGTGTATCCAGG 58 NA Rattus norvegicus 81 Aox2 ENSRNOG00000033923 ENSRNOT00000048027 1 1 1 80 9 65220021 65220722 GATCAGATAGTTGAAGGGAAGG 58 65220763 65220781 TGGAATGACAAGCACTCTC 58 NA Rattus norvegicus 81 Dcdc2 ENSRNOG00000017511 ENSRNOT00000068021 3 1 1 80 17 41880785 41959691 TTCCAGACAACGATGAAGG 58 41880723 41880742 CATCTTCCTGAACTTCTGCT 58 NA Rattus norvegicus 81 Elavl3 ENSRNOG00000013752 ENSRNOT00000018416 3 1 1 80 8 23048205 23048432 ATAAGATCACAGGACAGAGCC 59 23048145 23048165 GAGTGTTGATGGCTTTGTCTG 60 NA Rattus norvegicus 81 Lrrtm2 ENSRNOG00000047085 ENSRNOT00000075420 2 1 1 128 18 28017620 28017639 CAGAAAGCAGGAAACTGGTC 59 28017177 28017530 CCACTTGAAATGTAAGCCCA 59 NA InUTR Rattus norvegicus 81 Col8a1 ENSRNOG00000039668 ENSRNOT00000060838 2 1 1 84 11 45000778 45000799 CCCAGTATATGAAGGAAATCCA 58 45000841 45004161 GCTAATGGTATTTCTCCTTTGC 58 NA Rattus norvegicus 81 RGD1563941 ENSRNOG00000005918 ENSRNOT00000007754 3 1 1 63 8 52829275 52829293 AAGGAGATCTCAACCCGTC 59 52829320 52829338 GTAACCAGGAAGCTGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magee2 ENSRNOG00000021400 ENSRNOT00000037575 1 1 1 60 X 75793526 75793545 GATACTCAGACGAGCCTCAG 60 75793566 75793586 AAGGACTCTCAGATTCAACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036746.1 ENSRNOG00000052909 ENSRNOT00000071634 3 1 1 60 X 1543431 1543449 GGCTCTGTGTTGACAAGTG 59 1543473 1543491 CAGATGGTTCTGACAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360117 ENSRNOG00000032635 ENSRNOT00000041984 1 1 1 60 3 3390054 3390073 AACCCAGAGACCAAGAAGAC 59 3390095 3390114 AGGAAATGACCTTCTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp1 ENSRNOG00000015121 ENSRNOT00000049285 1 1 1 80 19 21262781 21262799 GGTTCCTGATGACCCTCTG 60 21262840 21264476 TGCATGTCTCTAAGAAAGACCT 59 NA Rattus norvegicus 81 Bpi ENSRNOG00000034195 ENSRNOT00000039994 2 1 1 80 3 154759089 154759108 GCTTATTGGCGAGATGAAGC 60 154760123 154764640 AGTAACTCCACCTTAAAGGAGC 60 NA Rattus norvegicus 81 RGD1559600 ENSRNOG00000042232 ENSRNOT00000066597 2 1 1 80 1 189348257 189359689 CTACTCAAGATGCAGGTTGAC 59 189348197 189348216 AGACAGAGTCCAAGTCTCTG 59 NA Rattus norvegicus 81 Hars2 ENSRNOG00000016087 ENSRNOT00000021797 3 1 1 80 18 29635191 29635295 GAATTGCCGATAAGATCTCCC 59 29635332 29635355 GTACTGCTTCATAAATGACTCCTG 60 NA Rattus norvegicus 81 Col9a2 ENSRNOG00000011502 ENSRNOT00000048506 3 1 1 92 5 139966007 139966025 CAGGTAAAGTTGGTCCTCC 58 139966164 139967340 CCATTAAACCATCAATGCCAG 58 NA Rattus norvegicus 81 Nhlh1 ENSRNOG00000005166 ENSRNOT00000006862 1 1 1 194 13 90440088 90442856 GAGTCCTTCTAGGCTCCAG 59 90439912 90439930 AGTTGAGCATCATGGTGGA 59 NA InUTR Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076526 1 1 4 97 1 216295152 216295170 GATGCTAGCTCCTGAGTGG 60 216295231 216335842 AACAATGAGGAAGCCCTCC 60 NA Rattus norvegicus 81 Ano7 ENSRNOG00000023427 ENSRNOT00000033233 3 1 1 80 9 100517606 100521381 ATAGATCAGCGCGATGTCC 60 100521425 100521443 GTAGCAGAGTACAGCCCAG 60 NA Rattus norvegicus 81 Rspo4 ENSRNOG00000009662 ENSRNOT00000012951 1 1 1 81 3 147386818 147386836 GAAGAGATGGCAAGTTGCC 59 147386880 147389618 TGGGATTTCTTTCTCCTGGG 59 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 3 2 2 80 1 171974085 171974104 CAGCTAATTCGCCACATCAC 60 171972980 171974043 ATCCTCTTCTGTCTGGTTGG 59 NA Rattus norvegicus 81 Mrps23 ENSRNOG00000010363 ENSRNOT00000013771 1 1 1 82 10 75535130 75535150 TCAACCTATGGATCTGGTCAC 59 75535194 75535417 TACTTCTCCACAAACCGCT 59 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846,ENSRNOT00000067129 3 2 2 80 5 24609699 24609717 TTGTAAGTGAGGAGCACAG 57 24609540 24609658 CTTTGTAAACCTCGATGTAACG 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 1 2 4 101 6 52663090 52663108 ACTGTCCAGTGATGAAGGG 59 52663173 52667416 AATGAGCAGAACGCAAGAG 59 NA Rattus norvegicus 81 Nrsn1 ENSRNOG00000017444 ENSRNOT00000023519 1 1 1 85 17 41806433 41806454 CCTCTATCTGGGAGTATGAGGA 60 41806500 41815376 GATGAGTCCGACCTTCCAG 60 NA Rattus norvegicus 81 Ltbr ENSRNOG00000019264 ENSRNOT00000026184 3 1 1 90 4 157824273 157825219 CATCCAGAGGGAGAAGAATCTC 60 157824204 157824222 CAGACATGGGTAGGAGTGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000076508,ENSRNOT00000041271 3 2 3 60 5 48290120 48290138 GAATACCTCCATGAGCCCT 59 48290162 48290180 AGACGACCTTCTCTGACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Selplg ENSRNOG00000000699 ENSRNOT00000000888 3 1 1 80 12 48578421 48578441 ATAAAGGCAGAGACCTCACAG 60 48578509 48578527 TGAGGTCTCTGCCTTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 1 2 2 80 13 96231313 96231333 AGGTGGTTACTCAAACAGAGG 60 96231029 96231271 CGTCCTCTGAAGTTCTGGT 59 NA Rattus norvegicus 81 LOC100364352 ENSRNOG00000043320 ENSRNOT00000040989 3 1 1 80 1 83310138 83310157 CTTCAGCACTTTCTGGATGC 60 83310199 83315149 ACAAATTCGCTTTCCTGTGG 60 NA Rattus norvegicus 81 Ptch2 ENSRNOG00000057616 ENSRNOT00000087353 3 1 1 115 5 135981922 135981940 GTACTTCTTCGTGGTGCTG 59 135982017 135982344 TGTATATCTGGACCACCTGTG 59 NA Rattus norvegicus 81 Olr1192 ENSRNOG00000033025 ENSRNOT00000044249 2 1 1 60 8 21341184 21341203 ACGATCCCTAAGATGTTGGT 59 21341143 21341162 ATTCTGCATAGGTGATGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 2 2 2 80 1 143374931 143378414 GGTAACTGAATCTGTTGTAGGC 59 143374872 143374891 ACGTAGATCGTGTAGCTGTG 60 NA Rattus norvegicus 81 Rhoq ENSRNOG00000015415 ENSRNOT00000020822 1 1 1 80 6 10563152 10563171 AAAGGAGGAATGGGTACCAG 59 10563212 10563508 CGGAGATCAATCTGAGTTCCT 59 NA Rattus norvegicus 81 Pate3 ENSRNOG00000046243 ENSRNOT00000074011 2 1 1 81 8 36841020 36842329 CATTGTGGAAGCAACAACAC 59 36840958 36840976 AACACCAAAGCCTCTTCTG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 1 1 1 85 1 67371549 67372156 CATCATCCCTCCTCAGGTG 59 67371482 67371500 TATGCATGAAGTCCAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Prkdc ENSRNOG00000025028 ENSRNOT00000035247 2 1 1 80 11 89459589 89463677 TGTTACATCTGACGAAGCAC 58 89459528 89459547 ATTTGTCCTCCCAGAGATCC 59 NA Rattus norvegicus 81 N4bp3 ENSRNOG00000045965 ENSRNOT00000075465 1 1 1 130 10 37092762 37093266 TTTACTCAGGTGCTCGAGG 59 37092650 37092668 ATAAACAGCTGCAGCTGGA 60 NA Rattus norvegicus 81 RGD1311946 ENSRNOG00000025245 ENSRNOT00000034240 2 1 1 60 1 218951900 218951918 TGCCCTTATCTAGAAGCCA 58 218951936 218952657 CACTTATTAGTGACTAAGTGTCGTG 60 NA DesignRelaxed Rattus norvegicus 81 Syce1 ENSRNOG00000024073 ENSRNOT00000033074 1 1 1 80 1 213526598 213527157 GAAGTGGACTCATTACACGA 57 213526306 213526324 CTGCATAATCCTCAGGGTC 57 NA Rattus norvegicus 81 Olr340 ENSRNOG00000031648 ENSRNOT00000046384 3 1 1 60 1 229755728 229755752 TTGTCTTCCTTCTCATCTATCTCAG 60 229755770 229755788 ATCAACCCTACCATTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spef1 ENSRNOG00000021247 ENSRNOT00000028861 2 1 1 80 3 123716205 123716223 GCTCATTCCATTGAGGCAG 59 123715933 123716161 GGAACCAGCTCCTGTAAGG 60 NA Rattus norvegicus 81 Sval1 ENSRNOG00000025519 ENSRNOT00000021832 3 1 1 95 4 71376564 71376584 CTTCAAATTCTCTACCAGCCC 59 71376636 71377715 TAGAGTGTTCCTATTATCCTGACC 59 NA Rattus norvegicus 81 Olr922 ENSRNOG00000047837 ENSRNOT00000043396 1 1 1 60 11 23062623 23062644 TATTAAACCATCTGCAAGGGAG 58 23062584 23062604 AGTATACAGCAAAGCTACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Decr1 ENSRNOG00000008236 ENSRNOT00000011330 1 1 1 80 5 29587220 29587241 TCGAGATCCTGATATGGTACAC 59 29586101 29587182 GCATTGTTTATCACCACATCAG 58 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000076918,ENSRNOT00000015576 2 2 2 60 5 74954659 74954677 CCTAGATGAGGTGCTGGAG 59 74954701 74954719 CCCGTTGTAAGTTCCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 3 2 2 83 1 266953220 266953239 CTTCTCCAGTGTCTCCTCTC 59 266953285 267018766 CCGATGGAGTCTTTGAGGT 59 NA Rattus norvegicus 81 Psmc5 ENSRNOG00000010038 ENSRNOT00000013997 3 1 1 80 10 94450349 94450367 AAGAAGTGATTGAGCTGCC 58 94450411 94450637 ATAGCAGGACTCCCTTTGG 59 NA Rattus norvegicus 81 Olr1557 ENSRNOG00000046622 ENSRNOT00000060874 2 1 1 60 11 43617397 43617417 TTATCATCCACAGTGACACCA 59 43617357 43617375 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr1 ENSRNOG00000048145 ENSRNOT00000073970 2 1 1 76 6 79254397 79254416 CCTGAAATCTCCAGGTACAG 57 79254821 79254840 TTAATAAGCAGCACCATCGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911801 ENSRNOG00000046963 ENSRNOT00000071964 2 1 1 60 8 42010506 42010524 TCTTCAGGTAAGGGTTGGT 58 42010548 42010566 TAGCAGTGATGATGTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 3 2 2 81 2 123271336 123271354 TAGCTGGTGTGAAAGTAGC 57 123271397 123272310 CCACCTTCTTTCCTAACTCTC 58 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637,ENSRNOT00000085613 3 2 2 80 6 27559350 27559368 CCAACAGACTGAGGAAGGA 59 27555908 27559308 CAATCATAGCATGACCCTGTC 59 NA Rattus norvegicus 81 Hoxd3 ENSRNOG00000001577 ENSRNOT00000033511 3 1 1 160 3 61658535 61666296 GGATCCAGGTTACCTGGAG 59 61666419 61666438 CATAGTATGCAGCCTTCTGC 59 NA InUTR Rattus norvegicus 81 Itk ENSRNOG00000006860 ENSRNOT00000009211 3 1 1 80 10 31438113 31438132 GCTTTCGGTTATACAAGCCC 59 31434117 31438071 CTTCCGGTTTCTCTTTCCAG 59 NA Rattus norvegicus 81 Mir448 ENSRNOG00000035635 ENSRNOT00000053758 2 1 1 60 X 118277707 118277725 TAGTGCTGCCAGGAAATCC 60 118277749 118277767 CCTACATATGCAACCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1316 ENSRNOG00000057118 ENSRNOT00000087263 2 1 1 60 8 43567480 43567499 TGAGAGCAGATTCAAAGCCT 60 43567522 43567540 GAAGACAGCCACAGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 1 2 2 80 1 177195004 177199075 AATTCCAGTCCAATTCAACACC 60 177199115 177199134 AAGACGACGAAGATGAAGGA 59 NA Rattus norvegicus 81 R3hcc1l ENSRNOG00000051256 ENSRNOT00000081765 1 1 1 80 1 261815885 261815906 TTCCTGATATTGACCTCAGTG 57 261815947 261815968 CTTCTGTACGAAATTCTTGAGG 57 NA Rattus norvegicus 81 Plk3 ENSRNOG00000018484 ENSRNOT00000025197 3 1 1 80 5 136002410 136002428 TAGTATAGCCTACGCGGTC 58 136002261 136002369 ATCTCGTTTATGATCTTCTCGC 59 NA Rattus norvegicus 81 Olr148 ENSRNOG00000016993 ENSRNOT00000022789 3 1 1 60 1 169305663 169305682 CAACCATACTGTCATAGCCC 58 169305705 169305723 GACAATAGCCACACTACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr208 ENSRNOG00000045631 ENSRNOT00000051962 1 1 1 60 1 170742975 170742994 GTGGTTGGAATGTGGTATGG 59 170742934 170742953 TGTGAAAGGAACTGGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dtnbp1 ENSRNOG00000048719 ENSRNOT00000074600 1 1 1 82 17 20166602 20167630 AGGATTTGACCAAGTTTGCTC 59 20181075 20181093 TTCCATGGAGGACATGCTG 60 NA Rattus norvegicus 81 Fkbp1a ENSRNOG00000008822 ENSRNOT00000012608 3 1 1 103 3 147058198 147058218 AGAAATTTGACTCCTCTCGGG 60 147058283 147060551 CACACTCATCTGGGCTACC 60 NA Rattus norvegicus 81 Olr1320 ENSRNOG00000058809 ENSRNOT00000090359 2 1 1 60 8 43628582 43628601 TCACCATGTCTTACCAAGTC 57 43628623 43628642 ATGAAGCCCATACCATACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000075056 3 1 2 89 17 39725096 39725117 GGATGAAAGACAGGATACTTCC 58 39724815 39725049 GAGACAGTTTGATTTCATGGAC 58 NA Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000065685 2 1 2 80 17 39724824 39724933 GCATTAATAGATCTGTCCAGCA 58 39724765 39724786 ATGTTTAAGGATGAGTGTCCAG 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000036654,ENSRNOT00000086418 1 5 6 105 4 157545531 157545549 CATCCGTATCCATTCAGGG 58 157545618 157546300 CATCTTGGAGTGAATCCGG 58 NA Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 2 1 1 66 8 38154249 38154267 ATCTTGCTGCTCCTACTGG 59 38153336 38154219 ACTCAAAGCACACCAAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Rnf11l1 ENSRNOG00000048819 ENSRNOT00000071608 1 1 1 60 9 86653637 86653656 GACCCAATTCGATTTCTGCC 60 86653596 86653616 ACCAGTCATCTATACAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap25 ENSRNOG00000009347 ENSRNOT00000012645 2 1 1 80 4 119281673 119285661 GAAGTTATTCCAGCCTCAAGTG 59 119281614 119281632 CATCTCTACCTGGGAGCTG 59 NA Rattus norvegicus 81 Coro2b ENSRNOG00000015257 ENSRNOT00000020951 2 1 1 80 8 67382902 67382920 GCTTCTACAAGCTCGTGAC 59 67382531 67382858 CCTGGTAGGAATCTGACCT 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000004010,ENSRNOT00000083688 3 3 3 80 10 35356393 35356413 ATACCTCCTCTACCAGATGCT 60 35356454 35361839 TTGCTAGGCTTCAAATCCCT 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 2 2 2 80 12 2549754 2549772 GAGAAGCTGAAGAAACGGA 58 2549601 2549710 CAATGCTTTCACAATCGCC 58 NA Rattus norvegicus 81 LOC102546937 ENSRNOG00000049468 ENSRNOT00000044160 1 1 1 80 19 28594228 28594249 AACTTAGTGATGGAGAACACTG 58 28593536 28594188 GAGCAGGTTTCTAGAGAAGG 57 NA Rattus norvegicus 81 Cep55 ENSRNOG00000016377 ENSRNOT00000022133 3 1 1 80 1 256750470 256755011 ATGCAGCTGAAAGATGCTC 59 256755055 256755073 AAGCCCTTTAACGTAGGCT 59 NA Rattus norvegicus 81 Tamm41 ENSRNOG00000007874 ENSRNOT00000010397 2 1 1 80 4 146948611 146948629 ACTCTGATTGAGGACCTCC 58 146941631 146948569 CATCGATACAATCTTCACCGG 59 NA Rattus norvegicus 81 Cbln1 ENSRNOG00000000010 ENSRNOT00000000011 2 1 1 87 19 20607759 20607945 TACTTCGACCAGGTACTAGTG 58 20607994 20608012 AACTGTAGATGCCTTTGCG 59 NA Rattus norvegicus 81 Rpap1 ENSRNOG00000005483 ENSRNOT00000007299 2 1 1 80 3 111566476 111566494 CCGTCCTCTACACTGTAGC 59 111566282 111566432 CCTTCACCTCATCTGAGCT 59 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967,ENSRNOT00000087964 3 2 2 80 13 96149087 96153401 CCTGTCAGAGATTCTCTGTG 58 96153443 96153462 AGAAAGGGTATACAGGAGCT 58 NA Rattus norvegicus 81 Tgfb1 ENSRNOG00000020652 ENSRNOT00000028051 2 1 1 105 1 82496397 82496903 CACAGTACAGCAAGGTCCT 59 82496972 82496990 TAGTAGACGATGGGCAGTG 59 NA Rattus norvegicus 81 Ibtk ENSRNOG00000027728 ENSRNOT00000056930 2 1 1 80 8 93326391 93326803 GTAGACAGTCCCAATCCCT 58 93326329 93326347 TACAATGGATGCGAACGTG 59 NA Rattus norvegicus 81 Mir125b2 ENSRNOG00000035502 ENSRNOT00000053625 1 1 1 60 8 45746966 45746984 TAGATCCGAACTTGTGCTG 57 45747002 45747026 CTAACAGACACATACCTATAGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc39b ENSRNOG00000042603 ENSRNOT00000058611 1 1 1 80 5 101346820 101346838 TTTGTACCGTGTGACACCA 60 101339964 101346777 CTTGGCTGATGAACCTTCTG 59 NA Rattus norvegicus 81 Gli2 ENSRNOG00000007261 ENSRNOT00000009963 1 1 1 80 13 34843248 34843266 ATCTACGAGACCAACTGCC 59 34840803 34843206 ATTGTTGATGTGATGCACCAG 60 NA Rattus norvegicus 81 Gli2 ENSRNOG00000007261 ENSRNOT00000009963 2 1 1 80 13 34861031 34861051 GGACATTCTAATGCAAAGTGG 58 34851186 34860989 AATCGTGATGCATCCACAG 58 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 3 1 1 63 18 29587487 29587637 GAGATTTCATCCAGCAACGG 59 29587443 29587461 ATTAGAATGGGCAGGTCGG 60 NA DesignNoJunction Rattus norvegicus 81 Fnip1 ENSRNOG00000009104 ENSRNOT00000012671 2 1 1 80 10 39852045 39852069 CACAGACTCATCCATATAACCCT 60 39853471 39853490 TTGCTAACCGTACTGGAGAC 60 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252,ENSRNOT00000001203 2 2 2 80 12 6292045 6292065 AGTTTGGAATGTCATCTCAGG 58 6292104 6296821 CCTTCTCTTTCTTCTCTAGGGT 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719,ENSRNOT00000080684 2 4 4 80 17 43522915 43523202 TATTGCTCCAAGGTATGCC 57 43522853 43522872 ACAATGGGTACCATTACAGC 58 NA Rattus norvegicus 81 LOC100909409 ENSRNOG00000046751 ENSRNOT00000042150 2 1 1 80 19 27840023 27840673 TAACTTCTATCGCAACCTGCA 60 27840715 27840733 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Tpt1 ENSRNOG00000001049 ENSRNOT00000001383 3 1 1 83 15 57892625 57892991 CATGAAATCACTCAAGGGCA 59 57893036 57893055 TTAATTTGCTCTGCAGCTCC 59 NA Rattus norvegicus 81 Dhx33 ENSRNOG00000007054 ENSRNOT00000009468 1 1 1 80 10 57634409 57634427 TGTGCTCTTTGGAGTAGTG 57 57634180 57634368 GACATCACAATCACTTTGAGAG 58 NA Rattus norvegicus 81 Il17d ENSRNOG00000051120 ENSRNOT00000091953 2 1 1 102 15 37799617 37806846 GCCCACATGATTTCCTACG 59 37806912 37806930 AGTCCTCCTCACCGTAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Il17d ENSRNOG00000051120 ENSRNOT00000091953 3 1 1 106 15 37799613 37806843 ATTTGCCCACATGATTTCCT 58 37806912 37806930 AGTCCTCCTCACCGTAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Tagln3 ENSRNOG00000002151 ENSRNOT00000002942 3 1 1 80 11 57507148 57517017 ATCTATGGGAAGGGAAGGAC 58 57517059 57517078 CATCATCCTTGGTAACTGCA 58 NA Rattus norvegicus 81 AABR07062513.1 ENSRNOG00000001804 ENSRNOT00000040645 3 1 1 80 4 180689375 180689394 CCAACAAAGTATTGGCCACC 60 180684365 180689335 ACTTAGTCACAAACCTCCTCTC 60 NA Rattus norvegicus 81 Slc4a9 ENSRNOG00000018525 ENSRNOT00000025137 2 1 1 80 18 29354937 29355234 AGTGACCCTCAATTCCAGTG 60 29355276 29355295 CTGTAGGAAGGCATCTAGGG 59 NA Rattus norvegicus 81 LOC680528 ENSRNOG00000039678 ENSRNOT00000060861 3 1 1 81 11 44090881 44090899 TGGTTCTATGCCCAAAGTG 58 44090943 44091993 TTTCAGGCCTCTGAATATCC 57 NA Rattus norvegicus 81 Eif2ak4 ENSRNOG00000006027 ENSRNOT00000009222 2 1 1 80 3 110226694 110230047 CCTTGTCATCTAATAGTCTGTGTC 59 110230086 110230104 TTATGGTCGGCGTTAGGTC 60 NA Rattus norvegicus 81 Stmnd1 ENSRNOG00000031595 ENSRNOT00000051732 3 1 1 81 17 18812679 18817010 ATAAATTCAGACCCAGTGGC 58 18812617 18812636 TGTCTGATGACTTTGGTCTC 57 NA Rattus norvegicus 81 Taf11 ENSRNOG00000024601 ENSRNOT00000038195 2 1 1 81 20 7480330 7480350 AGCTGAAATTAGACACCAAGG 58 7478530 7480288 ACCAGGATTTGCATCTTCTG 58 NA Rattus norvegicus 81 Olr1356 ENSRNOG00000039773 ENSRNOT00000061019 2 1 1 60 10 11942154 11942172 CAATACATGCGTCTCCCAC 59 11942112 11942130 CCCATAGATAGCAGAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk6 ENSRNOG00000020599 ENSRNOT00000027953 2 1 1 60 16 21274554 21274573 GCGAACTTGGCTATAAGCTG 60 21274513 21274531 ACCTTCACCTTGGAGTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erlin1 ENSRNOG00000012911 ENSRNOT00000017268 2 1 1 80 1 263823136 263824696 TTGAGTTAATGGAGGCAGAG 57 263823075 263823094 CTGTCTCAGCTTCTTTCTCC 58 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 3 2 2 80 20 10830405 10830424 TGAGATTGGACTGTGAACAC 58 10820969 10830363 CCAACTTCTCCTTCTTCTCC 58 NA Rattus norvegicus 81 Tmem176a ENSRNOG00000023708 ENSRNOT00000049891 2 1 1 92 4 78461265 78461730 CATGCTAAAGACCCTGCTC 58 78461783 78461804 TAGACACATACAGGGATGAGAG 59 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263,ENSRNOT00000086491 3 2 2 81 8 102146739 102146758 AGGTAATCATTGTGGATGCT 57 102143550 102143568 ACATCCCAATTCTCAGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 1 2 2 80 17 15691886 15691906 TGTCCTTATCAACACTCAGTC 58 15686210 15691845 TCCACATTCTGGTTGATCTC 57 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 2 2 2 175 18 32340785 32340803 TGAGGATTCTTCCCGATGG 59 32351714 32356444 TTCATTTGGTGTCTGCGAG 59 NA Rattus norvegicus 81 Defb43 ENSRNOG00000038759 ENSRNOT00000059212 1 1 1 80 15 46196814 46201120 CCATACTTCCTCTGGCCAG 60 46201164 46201182 CTTTGCACTTCATCCTGCA 59 NA Rattus norvegicus 81 LOC100364827 ENSRNOG00000048656 ENSRNOT00000050384 2 1 1 60 2 31379027 31379046 CATCAAGCACTCAAAGAGCA 59 31379067 31379087 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin2b ENSRNOG00000008766 ENSRNOT00000011697 1 1 1 80 4 169873165 169873185 ATTTCTGCTCAGACTCTCACC 60 169752533 169873124 GGAGGACTCATCCTTATCCG 59 NA Rattus norvegicus 81 AABR07052753.1 ENSRNOG00000009376 ENSRNOT00000012416 3 1 1 85 3 72786497 72786515 CATGAAAGTGGCCTCTGTG 59 72786428 72786453 CATCTGAGACCTCTTTATTCAAGG 59 NA Rattus norvegicus 81 Rab3d ENSRNOG00000011582 ENSRNOT00000015609 1 1 1 151 8 22926884 22926902 GATCAAGCTGCAGATCTGG 58 22926203 22926312 TAATCTGCGTAGCCCAGTC 59 NA Rattus norvegicus 81 Olr1156 ENSRNOG00000029802 ENSRNOT00000049712 2 1 1 60 8 19811633 19811655 CTTGAAGATAGCATCATTGGAGG 59 19811672 19811693 CAAGTGAGTTCCACAAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nab1 ENSRNOG00000012959 ENSRNOT00000017813 1 1 1 80 9 53916131 53924672 CTCACATTGCATGAGCTCAC 60 53924715 53924733 ATCTCTTCTCGTCAGCAGG 59 NA Rattus norvegicus 81 RGD1561661 ENSRNOG00000023094 ENSRNOT00000030170 2 1 1 60 X 13442070 13442089 GATTAGCGACTACCTGACCA 59 13442112 13442130 CTCACTCAGGCTTTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Umodl1 ENSRNOG00000001157 ENSRNOT00000050744 1 1 1 80 20 9681330 9681348 CCACCTTCCTCTTTCCCAG 60 9681392 9682633 AATGGGTCCAGGAACACAG 60 NA Rattus norvegicus 81 Ndufs5 ENSRNOG00000026646 ENSRNOT00000036389 1 1 1 97 5 141393947 141405369 CCAAGAAGTCATGCCTTTCC 59 141393869 141393889 CATTCTTGTAAGGCTGCTCAG 59 NA InUTR Rattus norvegicus 81 Cabp2 ENSRNOG00000018339 ENSRNOT00000071109 1 1 1 87 1 219333329 219333910 CACAGCAAATCAGTGGTGG 60 219333961 219333979 ATCATGTCTGCCGTCTCTG 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000004252 ENSRNOT00000005786 1 1 1 80 6 10222510 10224011 TCGTTCTCATTTACGATCCC 58 10224052 10224072 CCATCAGTTTAGGAGTCAGTC 58 NA Rattus norvegicus 81 Grb2 ENSRNOG00000037360 ENSRNOT00000056528 1 1 1 78 1 98046701 98046719 ATGAGCTGAGCTTCAAGGG 60 98046641 98046662 GCCTTATACCAGTTCTGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1086 ENSRNOG00000042262 ENSRNOT00000067342 3 1 1 60 7 13699349 13699368 TACAAAGCCGTTTCAACCTG 59 13699388 13699409 CATTGCTGTAGAACAAGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1095 ENSRNOG00000050274 ENSRNOT00000051928 1 1 1 60 7 15622290 15622308 CCAGCCAGATGTTCTTCTC 58 15622331 15622350 ATGACGGTGAGTAGAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr94-ps1 ENSRNOG00000000767 ENSRNOT00000000994 2 1 1 60 20 1875092 1875110 ATGTGGCTCTCACTTGACC 60 1875133 1875152 CAGATAAGTGTAGGTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Commd5 ENSRNOG00000050582 ENSRNOT00000075405 2 1 1 60 7 117964148 117964166 CTTCTCGACTCTGTAGCCC 59 117964188 117964208 ACCGGAAGTAAGACATGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000043822 3 1 5 80 4 22142210 22144585 CAAGGATGTCATCCTGGTG 58 22142148 22142166 TAGTCTGGAGCAAATGAGC 57 NA Rattus norvegicus 81 Zfp192 ENSRNOG00000053635 ENSRNOT00000088280 1 1 1 80 17 45083167 45083185 ATGGAGAAGAGGTGGTGAC 59 45083228 45084470 GTGTATGAGCTGAGACTGGT 59 NA Rattus norvegicus 81 Vom1r44 ENSRNOG00000033483 ENSRNOT00000046788 2 1 1 60 1 67175128 67175148 AGAAATATGGCAACTGCACTG 59 67175088 67175107 TCAAACACAAGCCATCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ugt8 ENSRNOG00000009345 ENSRNOT00000012676 1 1 1 80 2 229646618 229650536 CAATCCCAGTTATCGGCAG 58 229646556 229646574 GTAGTCCGATTGACAGGGT 59 NA Rattus norvegicus 81 Ngrn ENSRNOG00000013553 ENSRNOT00000018107 1 1 1 80 1 142051123 142051142 AATTCGAAGGCAAATGGAGG 59 142051182 142055339 TGTAAATACCGGATCTGTTCCA 59 NA Rattus norvegicus 81 Mettl1 ENSRNOG00000047895 ENSRNOT00000075544 3 1 1 81 7 70330008 70331281 GCTTGTTAGTGGCACTGTC 59 70331325 70331344 ACATAGTCGGACACCTTCAC 60 NA Rattus norvegicus 81 Rtbdn ENSRNOG00000043215 ENSRNOT00000064289 2 1 1 80 19 26069284 26069302 CATAGACAGACCAGAGGCA 59 26069343 26069488 AGAAAGAATTCACATTCTGGGC 59 NA Rattus norvegicus 81 Kcnj11 ENSRNOG00000021128 ENSRNOT00000028685 1 1 1 60 1 102105001 102105021 GTAGAAACCACAGGCATTACC 59 102104961 102104979 ACAGAATCTCGTCAGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1g3 ENSRNOG00000016677 ENSRNOT00000022792 1 1 1 80 18 48887469 48888588 ATTGGTAAACAGTTGCCTACTC 59 48888629 48888647 GTGTTGGTGTGCTTCTCTG 59 NA Rattus norvegicus 81 Tmem252 ENSRNOG00000025476 ENSRNOT00000035123 2 1 1 80 1 242572813 242572833 AAAGAGATGTTCAACCACGTG 59 242572874 242576101 AAAGTCAGGCCTGTCTACAG 60 NA Rattus norvegicus 81 Olr1142 ENSRNOG00000045713 ENSRNOT00000050754 3 1 1 60 8 19274641 19274664 CTCTGTAACCTGTCCTTTAATGAC 59 19274681 19274701 ACAACATCTTTGGGATTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912054 ENSRNOG00000048549 ENSRNOT00000044283 2 1 1 60 8 42309480 42309500 ATTACTTCTGTGACATCCTCC 57 42309522 42309540 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 2 2 2 80 3 5561767 5561787 CATCTCTGGACTCTTCAACTG 58 5561826 5562856 ATAAAGGCGTTCATGATCATCC 59 NA Rattus norvegicus 81 Chl1 ENSRNOG00000045771 ENSRNOT00000073039 2 1 1 80 4 70279881 70286096 TCACGTCATAGTAGAAGAGCC 59 70286138 70286156 AAGATACCGTTGCTCCCTG 60 NA Rattus norvegicus 81 LOC100910414 ENSRNOG00000037984 ENSRNOT00000003791 3 1 1 80 13 97944087 97944108 GATATCAGTAATCCAGCCTCAC 58 97944148 97949503 AAATCGATAAGGTCCTACGC 58 NA Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 2 2 2 83 7 70584141 70584160 TATGAGGATCTGCAGGAGGT 60 70584203 70584526 TGATTCTTCCTCTTCGTTTCCT 60 NA Rattus norvegicus 81 Olr766 ENSRNOG00000050138 ENSRNOT00000043664 2 1 1 60 3 102741394 102741412 TGAACCTGAAGAGATGCAC 58 102741352 102741373 CCATGTATAAAGCCAATTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1737 ENSRNOG00000048048 ENSRNOT00000040388 3 1 1 60 20 1781781 1781801 CCTGCTTCACTCTGTAATGAC 59 1781822 1781841 ATGATGGACATGATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pten ENSRNOG00000020723 ENSRNOT00000028143 1 1 1 92 1 251461652 251463517 TTAACTGCAGAGTTGCACAG 59 251463570 251463590 GCCATTGGTCAAGATCTTCAC 60 NA Rattus norvegicus 81 Zfp518b ENSRNOG00000028534 ENSRNOT00000037291 2 1 1 60 14 76869168 76869189 GTCATCGTGTTAAACCATCCTG 60 76869207 76869228 TTACCTTCATCACATTGGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grifin ENSRNOG00000001251 ENSRNOT00000001686 1 1 1 103 12 16170778 16171642 CCTTTGAGGTGGAGGTGAG 60 16171709 16171727 GATGGTAGCTAGCGGTCTG 60 NA Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 2 2 2 80 3 148804537 148804557 AGGATACAAGAGACCACTGAG 59 148804599 148809496 ATGTTCTCTGCCCTGTACC 59 NA Rattus norvegicus 81 Pdrg1 ENSRNOG00000008845 ENSRNOT00000012141 2 1 1 80 3 148488504 148490462 TGATCCAGAAAGATCAGGAGC 60 148488444 148488462 GGAGGCGGTTAACTTTCAC 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417,ENSRNOT00000087094 2 2 2 80 12 13109127 13109851 CGTGCAAAGTGGTATCCTG 59 13109894 13109913 CCTAAGATCAAGCTTCGTCC 58 NA Rattus norvegicus 81 Cxcr6 ENSRNOG00000006319 ENSRNOT00000008294 3 1 1 60 8 132870631 132870651 ACCTCTGGAAACTTATGAAGG 57 132870673 132870691 CACTGACTTGAGACTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000054857,ENSRNOT00000017914 3 2 2 80 1 218443824 218444682 GAAGATGCCATAAAGTACCGA 58 218443764 218443782 GTTCGAGTAATACCAGCGG 58 NA Rattus norvegicus 81 Mir551b ENSRNOG00000036429 ENSRNOT00000054541 2 1 1 60 2 116867663 116867682 TGAAATCAAGCTTGGGTGAG 59 116867704 116867723 CTGAAACCAAGTATGGGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000065194 2 1 2 80 X 63165758 63165958 GGAGAAGATGACTTAGGTGG 57 63165697 63165715 TGGATCAAGCAGTTCAACC 58 NA Rattus norvegicus 81 Tnp2 ENSRNOG00000002566 ENSRNOT00000003455 2 1 1 80 10 4954213 4954232 AAAGTGAGCAAGAGAAAGGC 59 4954273 4954486 CTTGTATCTTCGTCCTGAGCT 60 NA Rattus norvegicus 81 AABR07012329.1 ENSRNOG00000009602 ENSRNOT00000056479 1 1 1 173 2 193572439 193572457 CTCAACCACTCACAGGAGG 60 193572660 193572678 CTGTCAATGCTTGTGGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Irx6 ENSRNOG00000011037 ENSRNOT00000014831 1 1 1 80 19 15731569 15731587 AGAGTTACCCAGGGTACCT 59 15730927 15731531 CCTTAAACTCATACTGAGGATTCAG 59 NA Rattus norvegicus 81 Lipk ENSRNOG00000019409 ENSRNOT00000026299 2 1 1 80 1 252336206 252337452 GCTCAAGGAAAGCAGTTCC 59 252337494 252337514 GGTTGCAAATCCAGTTACTGG 60 NA Rattus norvegicus 81 Gtf2e1 ENSRNOG00000026008 ENSRNOT00000042864 3 1 1 81 11 66083155 66083174 TCCTTCAAATGTCCTGTCTG 58 66083218 66096174 GGAAAGTTCCTGTCATGGG 58 NA Rattus norvegicus 81 AABR07051791.1 ENSRNOG00000046568 ENSRNOT00000071143 2 1 1 60 3 21521430 21521449 TGCTTATTGAACCCTTCTCC 58 21521845 21521863 ATCACATCTGGAAGCTCCG 60 NA DesignNoJunction Rattus norvegicus 81 Nkd2 ENSRNOG00000016103 ENSRNOT00000021898 2 1 1 80 1 32080132 32080601 TCTGCCTATAGCAGGAAGC 59 32080644 32080663 CTCTGTGTTCTCATCCACAC 58 NA Rattus norvegicus 81 Dguok ENSRNOG00000011617 ENSRNOT00000066678,ENSRNOT00000084388 2 2 2 80 4 115187390 115191300 AGTGACAGGTATATCTTTGCG 58 115187330 115187348 CCAGTCCTGATAGATGTGC 57 NA Rattus norvegicus 81 LOC100360933 ENSRNOG00000036981 ENSRNOT00000055614 1 1 1 90 1 143317680 143318053 CAACTCAGACCCTGGTAGG 59 143317608 143317626 TCTAACTCCACCTCCTGGA 59 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 2 2 2 80 5 156301239 156301998 GACAGCAAGAACATAGCCA 58 156302042 156302060 CATCCATTTCAGGGTGCTC 59 NA Rattus norvegicus 81 Crk ENSRNOG00000025792 ENSRNOT00000006407 2 1 1 60 10 63841133 63841152 TAATGCCTACGACAAGACAG 58 63852452 63852472 CTTCGTAACCTTTACCAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100363537 ENSRNOG00000047067 ENSRNOT00000071701 2 1 1 80 4 6029699 6029721 ATCAAGTTCCACATCAAGTTCC 59 6029762 6029780 GTCATCGGTCATCTTCACG 58 NA Rattus norvegicus 81 Csf2 ENSRNOG00000026805 ENSRNOT00000032333 2 1 1 86 10 39603060 39603789 GAGTTCTCCATCCAGAGGC 60 39602992 39603011 ATTGAGTTTGGTGAGGTTGC 59 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 2 2 2 80 16 19512855 19512874 GTGATGATGCCCTTAAAGCC 59 19512916 19515086 CATGTTCATCCTTGCTCAGC 60 NA Rattus norvegicus 81 Rn60_20_0013.1 ENSRNOG00000061444 ENSRNOT00000043674 2 1 1 60 20 1299942 1299960 CACCCACTGCTCTATCCAC 60 1299982 1300002 ACCCACTGACCAGAATATCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacs1 ENSRNOG00000020350 ENSRNOT00000027632 2 1 1 80 1 220516657 220518030 GAGAAGAACAAGAAAGTGCCC 60 220516597 220516618 GATGACTTGGCTCTTAGAATCC 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090,ENSRNOT00000077994,ENSRNOT00000019040,ENSRNOT00000089736 3 4 4 81 17 27502609 27504342 GATTTGAATGGCAACGTATTCC 59 27504384 27504402 CTCCATCTAACCCGTCCTC 59 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000046941 ENSRNOT00000071638 3 1 1 80 13 27653529 27653548 CAGAAAGGAACAGTAGAGCC 58 27652378 27653488 CATATCTGCTCCTGCATACAC 59 NA Rattus norvegicus 81 Prss2 ENSRNOG00000032916 ENSRNOT00000018852 1 1 1 80 4 70692338 70693566 TCACTGCTATAAGTCCCGC 59 70693609 70693628 TTGACAAACTGCTCATTGCC 60 NA Rattus norvegicus 81 Rn60_19_0521.1 ENSRNOG00000057215 ENSRNOT00000086367 2 1 1 60 19 41207713 41207732 CAAGGAGTCACCAAACAAGC 60 41207672 41207690 CGTCTATGTGGTAACAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabrr3 ENSRNOG00000001679 ENSRNOT00000002281 2 1 1 80 11 43071881 43072919 GGAAAGCTATGCCTATAATGAAGAG 60 43071825 43071846 ATGTGCTCTTCTGTGTTTAAGG 59 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 1 2 2 68 2 61691904 61692307 GGAGAACAACCAAATCTGGA 58 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 Wwtr1 ENSRNOG00000016617 ENSRNOT00000022507 2 1 1 83 2 147581135 147582559 TCCTTTCCTCAATGGAGGG 59 147581070 147581090 GTAGGGACACTGTAACATCCT 59 NA Rattus norvegicus 81 Gpnmb ENSRNOG00000008816 ENSRNOT00000011945 2 1 1 80 4 78705775 78706068 GACGTGTATGTGATAACAGATCAG 60 78706106 78706125 GGTTTCATCAGACGAGTTCC 59 NA Rattus norvegicus 81 Commd1 ENSRNOG00000009281 ENSRNOT00000012750 2 1 1 81 14 107728885 107759658 GGGAATTCTCAAGTCTATTGCA 59 107728825 107728843 TTGCTTCTTGGTTTGAGCG 59 NA Rattus norvegicus 81 Tex10 ENSRNOG00000008618 ENSRNOT00000011401 1 1 1 80 5 64186119 64187941 TCAGTAAGCATTTGGTTGGG 59 64186058 64186076 CCAGGAGCTTACACATCAC 58 NA Rattus norvegicus 81 Rptn ENSRNOG00000018679 ENSRNOT00000025249 1 1 1 80 2 193724372 193725097 GAGACATCCTTCGGAGACC 59 193725137 193725159 CATATCCATTTCTATCTCGGTCC 58 NA Rattus norvegicus 81 Apoo ENSRNOG00000046918 ENSRNOT00000073955 1 1 1 80 X 63542237 63542257 TCACCTTCAGAGTTTATGCAG 58 63542298 63544459 AGTAGAGTGAGAGCTCATCG 59 NA Rattus norvegicus 81 RGD1562200 ENSRNOG00000026157 ENSRNOT00000030771 3 1 1 83 X 45521427 45522082 AGGATAGAGGCATGTACCAG 58 45521363 45521381 ATATCCAGGTGTCAAGGGC 59 NA Rattus norvegicus 81 Ruvbl2 ENSRNOG00000020793 ENSRNOT00000028217 1 1 1 80 1 101420959 101420978 TCTCTGGAGATGAGCAAGAC 59 101420796 101420918 CTCTGTCTCCTCCTTGATACG 60 NA Rattus norvegicus 81 Slc25a20 ENSRNOG00000020288 ENSRNOT00000027520 3 1 1 80 8 117473033 117473381 CACAGGGAAAGAGTGTCCA 59 117473423 117473443 CAACCCAATTGAAGATCCCTG 59 NA Rattus norvegicus 81 Zfp57 ENSRNOG00000022730 ENSRNOT00000011704 1 1 1 80 20 2016935 2016956 TCTACACAGAAGACCCTTTACC 59 2015567 2016896 AGGTTTCTTCTTGCTTTCCAC 59 NA Rattus norvegicus 81 Rn60_X_0639.2 ENSRNOG00000051228 ENSRNOT00000077027 3 1 1 60 X 63821067 63821085 ACCTGAAGCCTTCAGTCTG 59 63821108 63821127 TTCAGGACTCAAAGACCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrh ENSRNOG00000053349 ENSRNOT00000085096 2 1 1 80 2 235239377 235239395 TCATAGCTCCACTGTTTGC 58 235237893 235239335 CCTTCCGAAACTTCTTATTGG 57 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000054017 ENSRNOT00000080490 2 1 1 140 17 44522346 44522364 TTCCTGGAGAACGTGATCC 59 44522467 44525634 TCACTTTGTTTCTTAGCCGC 59 NA InUTR Rattus norvegicus 81 Samd14 ENSRNOG00000004155 ENSRNOT00000005519 1 1 1 83 10 82823929 82823947 AAAGCTTCGAGAACCTGTG 58 82825752 82829051 TTGTGTAAGCTAGTATCCAGC 58 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000035411 2 1 2 80 2 181900843 181904572 GCTGAGAAGTTTCACGAGAC 59 181900782 181900801 CACTAATCCCAAGACAGCTG 58 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435,ENSRNOT00000066430 1 2 2 80 10 15621058 15621077 GGCAATAAGCTGCTCTTCAG 59 15621117 15629990 TCTGCTACGTGGTTTATTTGTC 59 NA Rattus norvegicus 81 Hspd1 ENSRNOG00000014525 ENSRNOT00000066589 2 1 1 80 9 61682217 61683065 TGTGTTGAAGGTTGGAGGG 60 61682155 61682176 CTTGTAGCATTGAGAGCATCTG 60 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493,ENSRNOT00000034256 2 2 2 60 3 142781736 142781755 GACAGCTATTCCTGGATTCC 58 142781447 142781713 GGCTGTACTGATTCTCTGG 57 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0639.3 ENSRNOG00000051322 ENSRNOT00000076936 2 1 1 60 X 63824567 63824586 TACCCATTCTCTTCCACGAC 59 63824609 63824627 AGGCTACATCTGAATGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkce ENSRNOG00000015603 ENSRNOT00000020959 2 1 1 80 6 9790453 9791683 AATGTCAAGTTTGTACCTGCG 60 9791725 9791743 CCTGTTTCTTTAGCCCAGC 59 NA Rattus norvegicus 81 Olr735 ENSRNOG00000054245 ENSRNOT00000089680 1 1 1 60 3 79009712 79009733 GTGCTGTTAGTTTCTTATGTGG 58 79009673 79009691 GTCCTTCTGCTGTATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ints5 ENSRNOG00000026005 ENSRNOT00000036115 1 1 1 60 1 225094759 225094778 AGAAGCCCTGAAGAGTTGAG 60 225094800 225094819 AGAGACTAACCACTAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470,ENSRNOT00000043271 2 2 2 80 18 29592929 29593081 AGGAAACCAAGAAAGATGAGGA 60 29596355 29596376 AAAGCATCCGATACACATTTCG 60 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 2 1 1 117 3 81509499 81510706 AGCTGAGTTCCAGAAGACC 59 81510787 81510805 GTACTGGATGGCAATGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp40 ENSRNOG00000011675 ENSRNOT00000015520 2 1 1 60 1 62557380 62557400 CATTCATCAGGCTTTGAAAGG 58 62557340 62557361 AACATTTGTAAGTCTCCTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl10 ENSRNOG00000045948 ENSRNOT00000073186 3 1 1 82 17 10569125 10571508 CCAACAAGCAAGACCTGAG 59 10569061 10569079 TCTCTGGTTGTCACTAGCA 58 NA Rattus norvegicus 81 AC094001.1 ENSRNOG00000054026 ENSRNOT00000028126 3 1 1 60 1 216953443 216953464 GCATGTTTCTCTTAGTCTTTGG 58 216953404 216953422 TTGCAGAATTTGGAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mnd1 ENSRNOG00000024733 ENSRNOT00000031179 1 1 1 80 2 183120953 183120971 TACTATTGGGCTTTCCCGA 58 183099993 183120909 TCCCTCTGATAGCTGAGAG 57 NA Rattus norvegicus 81 Rn60_6_0964.4 ENSRNOG00000056507 ENSRNOT00000083827 1 1 1 60 6 86813728 86813748 GGGTCATTTAGGTGCATAGTC 59 86813767 86813788 TCTTCAGCCACTTTCTTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1750 ENSRNOG00000043481 ENSRNOT00000075060 3 1 1 60 20 1945708 1945729 AACTCCTTCTCTTAACCCTCTC 59 1945749 1945768 GAGTGCCCTCTTTACTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 1700092M07Rik ENSRNOG00000048966 ENSRNOT00000073052 3 1 1 63 1 224938852 224938870 GTAACAGAGGAAGGCAGGG 60 224939012 224939031 TAGATCTTTGTTTACGGCGG 58 NA DesignNoJunction Rattus norvegicus 81 Paqr6 ENSRNOG00000026059 ENSRNOT00000036143 1 1 1 83 2 187738936 187738954 TAGACTGTGTCCTCAGCTC 58 187739001 187739100 ACAGGAAGTACCAAGTGGG 59 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792,ENSRNOT00000017243 3 2 2 96 8 123344460 123344480 GCATCTCATGGGTTCTATGAG 58 123341181 123344402 TCAATCCTGGGTAAACGGT 59 NA Rattus norvegicus 81 Cdon ENSRNOG00000011789 ENSRNOT00000016248 2 1 1 80 8 36690421 36690442 TTATGGTCCTCATTCTTCTGGT 59 36690480 36692403 GATCATATTTCTGTATGGCGCT 59 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469,ENSRNOT00000079999 2 3 3 80 9 10638140 10638326 CCTGCTGTACAAGAACAAGC 60 10638838 10638859 AGGTCTGCATTGTTCAATAAGC 60 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448,ENSRNOT00000005545,ENSRNOT00000088861 1 4 4 80 7 64850405 64853722 CAGGCTCTTACAGGTTAACCA 60 64853763 64853782 TTACCGGATTCGGCTATGAG 60 NA Rattus norvegicus 81 RGD1560695 ENSRNOG00000046438 ENSRNOT00000075402 1 1 1 60 1 18511424 18511443 AATGTGGTGAATCGTCTCGT 60 18511383 18511401 AGGCAGGGATAAAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata31d1b ENSRNOG00000043261 ENSRNOT00000064170 2 1 1 80 17 5334320 5334380 GCAAAGGAAGAGAAGCTGC 60 5334258 5334277 CTTGCTTCTTGCTGAGTGAG 59 NA Rattus norvegicus 81 Nmur2 ENSRNOG00000014081 ENSRNOT00000018967 2 1 1 80 10 41397391 41401301 AAGATGCTGTTTGTCTTGGTC 59 41397331 41397350 CACAAAGCTGAAGAAGAGCC 60 NA Rattus norvegicus 81 Coq3 ENSRNOG00000009974 ENSRNOT00000013384 3 1 1 80 5 36044872 36044891 TCCAGGAAAGCCTTTATCTG 57 36044934 36046436 AGTCTCCCTAGAGGTTCAG 57 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117,ENSRNOT00000080694 2 2 4 80 19 41068069 41068090 GCTTCCTATAAGTGTGAAACGA 59 41066816 41068031 AAGGTCAAACTCAAATACTCGG 59 NA Rattus norvegicus 81 Slc27a3 ENSRNOG00000015421 ENSRNOT00000020815 1 1 1 87 2 189761737 189761756 CTTGTACAGCTCTACACCCA 59 189761029 189761687 TAGTGGCCAAAGACTCCTG 59 NA Rattus norvegicus 81 Slc35b1 ENSRNOG00000004510 ENSRNOT00000006179 2 1 1 80 10 83205810 83205831 TTACCAAACAGGTTCCAATCAC 59 83205872 83207046 GTAAACAGGATCCCAGCAC 58 NA Rattus norvegicus 81 Uroc1 ENSRNOG00000043404 ENSRNOT00000038251 2 1 1 80 4 122248435 122249129 CAGCATTGAAATGAGGGCT 59 122249172 122249191 ATGATCATGTGCATGATGGC 59 NA Rattus norvegicus 81 Olr1143 ENSRNOG00000048354 ENSRNOT00000044135 1 1 1 60 8 19289602 19289622 TCCATGTATCTGATCACCACC 59 19289644 19289662 AGTCAGAGCTAACAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201,ENSRNOT00000024414 2 2 3 80 4 118521722 118521743 GAGATGACGTCTTAATAAAGCC 57 118518705 118521682 GTATCAAACCATCCAACTGC 57 NA Rattus norvegicus 81 Alg1 ENSRNOG00000002883 ENSRNOT00000067932 3 1 1 80 10 10547822 10547842 ACTATGGCTACTCCATCATGG 59 10545829 10547783 AGAACTTCTCATACCATTTGGC 59 NA Rattus norvegicus 81 AABR07029742.2 ENSRNOG00000046598 ENSRNOT00000072548 2 1 1 60 10 48995543 48995561 CTGACAAACCCGATATGGT 57 48995583 48995603 TCTGTCTTCTTCAACTTCGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr289 ENSRNOG00000031903 ENSRNOT00000046290 3 1 1 60 1 212836484 212836504 GGACATTGTCTGTACATCCAC 59 212836526 212836544 GCTCTTAAGCACTAGACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ing4 ENSRNOG00000023363 ENSRNOT00000024116 1 1 1 80 4 157561983 157562002 ACCCACATATTGCCTTTGTC 59 157562044 157562297 AACCACTCAATGGAACAGTC 58 NA Rattus norvegicus 81 LOC100911047 ENSRNOG00000047110 ENSRNOT00000075736 2 1 1 80 1 147045789 147045807 CAAAGAAGTCCCTGTTGCC 59 147043838 147045746 TGATCTTGTAGGCACCTGTC 60 NA Rattus norvegicus 81 Zxdc ENSRNOG00000025818 ENSRNOT00000038244 2 1 1 84 4 122294034 122294052 TCTATCCAGCTCTGCAGAG 58 122294099 122295726 CCCACTTTCCAAGTAGAGAC 58 NA Rattus norvegicus 81 Ccdc88a ENSRNOG00000004057 ENSRNOT00000067591 2 1 1 80 14 113923431 113923455 CTACATCCTTTGAAGATGTAAGTCC 59 113923491 113925193 CTGGTCTTGAAGCATGAACTC 59 NA Rattus norvegicus 81 Rn60_X_0647.1 ENSRNOG00000051094 ENSRNOT00000077067 2 1 1 60 X 63692435 63692456 GAACAAGATTACAGTTGTTGGG 58 63692396 63692417 TTAAGATACTGATGACACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc16a5 ENSRNOG00000023476 ENSRNOT00000032016 2 1 1 114 10 104024143 104030737 CAGGACTTATCACAGGCCT 59 104030815 104030833 ATTCCTATGGAGGCCAGTG 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000003713 ENSRNOT00000046768 3 1 1 82 X 45251456 45251478 GACAGAATACATGAACTTCGTGG 60 45250791 45251414 TTGGACAGGTGTCTGTGTC 60 NA Rattus norvegicus 81 Fam19a4 ENSRNOG00000005830 ENSRNOT00000067881 2 1 1 80 4 129213148 129228684 TGTGTTGAAGCTTCCATTGTG 60 129213088 129213108 AAGCACTTTACAGTCCTCTCC 60 NA Rattus norvegicus 81 Mdfic ENSRNOG00000053787 ENSRNOT00000082453 3 1 1 81 4 42222616 42252587 AACTTGTCAGAACCCAACCT 60 42252631 42252649 ATCTTGCTGGTTTCCTCCT 59 NA Rattus norvegicus 81 Hexim2 ENSRNOG00000021287 ENSRNOT00000004218 3 1 1 97 10 91218681 91221838 AGAAGACGAAGACTTCTGGTG 60 91221897 91221915 AATCTCCCTTCCTGGTTGC 60 NA Rattus norvegicus 81 Cfl2 ENSRNOG00000045892 ENSRNOT00000072589 2 1 1 81 6 75761699 75761838 GACCTAGTATTTATATTCTGGGCTC 59 75761642 75761663 TAATGGCATCTTTAGAGCTAGC 58 NA Rattus norvegicus 81 Tnpo2 ENSRNOG00000003970 ENSRNOT00000005571 1 1 1 80 19 26154987 26155005 ACAGCTCAACCAGTTTCCT 59 26155049 26155143 CGGGTTGGTTCATCTTCTG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 2 2 5 175 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80529950 80531281 AAGTTGTTAAAGCTGTGCCG 60 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000052387 1 2 5 70 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80533706 80536651 TCGATGATTTCCAGTTCATCTG 59 NA DesignRelaxed Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964,ENSRNOT00000039953 3 2 2 80 4 10456688 10457220 AGAATTCCTAATTGCGTCCT 57 10456627 10456646 ACAGAGGAGTAGGGTAAGAG 57 NA Rattus norvegicus 81 Olr361 ENSRNOG00000053372 ENSRNOT00000088190 2 1 1 60 1 230160514 230160533 TTTCTTAGACTCTCGGCTCC 59 230160556 230160574 CACCAGGGACAAATTACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brwd3 ENSRNOG00000002291 ENSRNOT00000050336 1 1 1 80 X 79875848 79875985 GAATCGCATACGGATAATTCCT 59 79868677 79868699 GTCTCTACTTCCACTAACAAACC 59 NA Rattus norvegicus 81 Timm22 ENSRNOG00000007988 ENSRNOT00000010778 2 1 1 80 10 64559973 64562547 CTTCAGAGCTGGAGTAAAGG 58 64562587 64562608 CGTAGGTAATAATCGATTGCAG 57 NA Rattus norvegicus 81 Dexi ENSRNOG00000002635 ENSRNOT00000003544 1 1 1 216 10 5199875 5199895 CGTCTTCGATGGATATTTGGA 58 5211365 5211383 CTCACTTCTCCTGGCAGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adgrf3 ENSRNOG00000024766 ENSRNOT00000032829 3 1 1 80 6 27538122 27538140 TCCAGACGTCCAATGAGAG 59 27538182 27539837 AGATGCTTTCATACTCACCTG 58 NA Rattus norvegicus 81 Cend1 ENSRNOG00000045680 ENSRNOT00000074016 2 1 1 61 1 214408312 214408330 AATCACAGCAACCTGAAGC 59 214408269 214408287 GTTGTATCAGGACTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc112 ENSRNOG00000003559 ENSRNOT00000004742 1 1 1 80 18 40230752 40230772 TGGCCAAGATACATAACAACG 59 40228879 40230711 GCTTCTCAACAAAGTCAGGG 59 NA Rattus norvegicus 81 Zfp235 ENSRNOG00000032625 ENSRNOT00000026088 1 1 2 63 1 80974455 80974473 CTCACATTTCCACACGCAC 60 81099310 81099331 GCACTCTTCACATTTATACGGT 59 NA DesignNoJunction Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000033661 2 1 2 83 1 88353116 88356855 ATCTCACTGGATCTGGAGTC 58 88353052 88353074 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 3 2 2 81 4 148233572 148247007 ATCTTTAAGTGGTGGCTCTG 58 148247051 148247069 GATTTGTTGCCCAGAAGGA 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000058357 3 1 4 81 X 53054455 53054474 CCCTGTTACAAAGACGTCTG 59 53054515 53062534 AAATGGGACCGAATATTGAGAG 58 NA Rattus norvegicus 81 Ranbp9 ENSRNOG00000017951 ENSRNOT00000024174 3 1 1 80 17 24036989 24037010 TGAATGTACCGGAACTAAACAG 59 24034355 24036951 CCATGTCTACATCATTACTGGT 58 NA Rattus norvegicus 81 Olr1106 ENSRNOG00000033022 ENSRNOT00000048039 3 1 1 60 7 139978394 139978415 TCAGAATATTCACCACTTCGTC 58 139978355 139978373 ATCAGAGCAAGACAAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd8 ENSRNOG00000000054 ENSRNOT00000000060 2 1 1 221 16 19871066 19872580 CTCGATGACCTCAGGACAC 60 19870863 19870884 CCTGGATTATCTTCAGGAGGAG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Taf6 ENSRNOG00000001355 ENSRNOT00000001829 1 1 1 80 12 19322780 19322799 GATGAGAAGACTCCATGGAC 58 19322620 19322740 TAGGGTCTTAATCACATCATGC 58 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000032303 ENSRNOT00000040261 2 1 1 60 1 219395505 219395524 TTATGCCCGAGATGAAACTG 58 219395464 219395485 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304728 ENSRNOG00000014027 ENSRNOT00000018808 1 1 1 80 10 58742807 58742826 TTTGAAGGATCTCCCATCAC 57 58741084 58742765 AAATGGACATCTGAAGCCTG 58 NA Rattus norvegicus 81 Slc22a12 ENSRNOG00000021108 ENSRNOT00000028665 1 1 1 84 1 221915518 221915855 TGCCTCAGATAGGTTTGGG 59 221915452 221915470 CATGAGGGCAGCTATTGTG 59 NA Rattus norvegicus 81 Rn60_5_0814.13 ENSRNOG00000051116 ENSRNOT00000076260 2 1 1 64 5 77898555 77898573 AACCTGAGCAGAGAAACGA 59 77898509 77898527 CATCGAGGTTGGATTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgc ENSRNOG00000014492 ENSRNOT00000019650 1 1 1 80 9 15267325 15267344 CTACCCTCAGTTTCGTCCTC 60 15266968 15267282 TGCAGAAGTTGTCCTCCTG 60 NA Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 2 1 1 60 2 191291778 191294223 AAGGCATTGAATGCAAGTG 57 191291736 191291756 CAAGGGTTATCTCCTTCTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266,ENSRNOT00000000053 1 2 2 87 13 89975511 89983958 CATCAGGGCCAAGATTGTG 59 89984009 89984027 TTTGTATGTTGGAAGGCCG 59 NA Rattus norvegicus 81 AABR07040288.1 ENSRNOG00000047560 ENSRNOT00000049969 2 1 1 60 X 96991682 96991702 TTTCTTGGGTTCTTGTTGCTG 60 96991835 96991853 ACTGGGTCATCTGGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Shmt2 ENSRNOG00000008106 ENSRNOT00000011082 1 1 1 80 7 70826596 70826615 CCCTCACCTTTCAAGTATGC 59 70826336 70826554 AAAGATGAGTCCTGACCTGG 59 NA Rattus norvegicus 81 Ndufa11 ENSRNOG00000048320 ENSRNOT00000070862 3 1 1 88 9 10338080 10338098 CGAAGCCTACAATGAGACC 58 10335199 10338028 TTATTAGGCCACAAAGGCC 58 NA Rattus norvegicus 81 Rpl13a ENSRNOG00000020618 ENSRNOT00000027976 2 1 1 80 1 101121020 101121269 CTACCAGAAAGTTTGCTTACCTG 60 101120962 101120980 CCTCCAGAGTAGCTGTCAC 59 NA Rattus norvegicus 81 Fsd1 ENSRNOG00000050318 ENSRNOT00000072830 1 1 1 80 9 11073514 11073532 ATGTTCGTGTGAAAGCCTG 59 11071809 11073470 ACATGAATGCTGGTGTCTC 58 NA Rattus norvegicus 81 Klk14 ENSRNOG00000033706 ENSRNOT00000029197 3 1 1 85 1 99620483 99620895 TCATGTCAGGGTGATTCTGG 60 99620942 99620961 ATAGCACAACGTTCCATTCC 59 NA Rattus norvegicus 81 Smarcb1 ENSRNOG00000028302 ENSRNOT00000029458 2 1 1 80 20 13684954 13686562 ATCGTCACATGACCATGGA 59 13686605 13686624 TCCAGAATCTCTTCCACCTC 59 NA Rattus norvegicus 81 Tfam ENSRNOG00000000613 ENSRNOT00000000753 3 1 1 124 20 18595147 18596700 AGCTAAACACCCAGATGCA 59 18597314 18597332 TGTACACCTTCCACTCAGC 59 NA Rattus norvegicus 81 Irf7 ENSRNOG00000017414 ENSRNOT00000023504 3 1 1 91 1 214251498 214251517 GGAGCTTGGATCTACAACTG 58 214251017 214251105 ATCCTAGGGACATACCCTG 57 NA Rattus norvegicus 81 LOC100911615 ENSRNOG00000018736 ENSRNOT00000025319 2 1 1 80 1 214437899 214438019 CTTAGGAGGAATGGCCTACTG 60 214438061 214438079 CTCTGCATCCTCTTCCTGG 60 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755,ENSRNOT00000037028 2 2 2 80 8 66890608 66890628 GTCAATAGTACAACCGTGCAG 59 66886524 66890570 GTACTGAGTCTCCTTGTAGTCTC 60 NA Rattus norvegicus 81 Rad1 ENSRNOG00000018063 ENSRNOT00000024557 3 1 1 80 2 60463852 60466161 CAAGTCCTACACCAGGGAC 59 60466201 60466223 CTTCTAGAAATAGCATCAGTGGG 59 NA Rattus norvegicus 81 Mir672 ENSRNOG00000040357 ENSRNOT00000062110 3 1 1 65 X 74982122 74982141 TTTGAGGTTGGTGTACTGTG 58 74982076 74982094 CACTTTCGAAGATGGCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kank3 ENSRNOG00000007230 ENSRNOT00000009532 1 1 1 80 7 18677575 18677593 CCACAATGACCAAGATGCG 60 18677637 18677749 AGTTCACACCTCCCTTCTC 59 NA Rattus norvegicus 81 Man2b1 ENSRNOG00000023910 ENSRNOT00000037699 1 1 1 80 19 26215721 26216087 AGATACTGGTCCCATCTCCT 59 26216129 26216148 GTACGGATTTGCATAGGCTG 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 1 2 2 80 10 29177341 29177359 GAGACTTGCAGAGGGTCTC 60 29177400 29179210 CATTGTCATATGCTACCAGCAG 60 NA Rattus norvegicus 81 Slc4a3 ENSRNOG00000020138 ENSRNOT00000027337 1 1 1 80 9 82744327 82744345 AGAAGAGGGAGAGTCTGAG 57 82744388 82744485 CTTCCAATGGAGAACTTTGC 57 NA Rattus norvegicus 81 Slc4a3 ENSRNOG00000020138 ENSRNOT00000027337 3 1 1 80 9 82750916 82751185 TCTATAAGGTGTTCACAGAGC 57 82751227 82751245 TATTCAGTTCCAAGCCAGG 57 NA Rattus norvegicus 81 Drap1 ENSRNOG00000020527 ENSRNOT00000038138 3 1 1 80 1 220805750 220805768 CTGTTGAAGAAGGCTTGCC 60 220805409 220805706 CTCAATGCACTGCTTCAGG 59 NA Rattus norvegicus 81 Boc ENSRNOG00000002041 ENSRNOT00000002790 1 1 1 80 11 61155751 61155769 TTCTGGGCTCTATCGTCCT 60 61155810 61156476 TTGTATGCTTCTGCTTAGACCA 60 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000048168 ENSRNOT00000063905 1 1 1 125 12 52638249 52638613 CCTGACAGAGAAGATCAGGG 59 52638786 52638804 GTGAATCTGTCGAACACGC 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758,ENSRNOT00000066128 1 2 2 81 15 51461133 51461151 CAGAACTCAGAGTTCGCCA 60 51461195 51462873 GATCAACTTCAGGGCATCAG 59 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075884 3 1 4 83 15 37825098 37825116 CAGAAGCAAACCATCAACC 57 37822841 37825054 TGTATGTGGTAGGTTTATCCAG 57 NA Rattus norvegicus 81 Parva ENSRNOG00000015713 ENSRNOT00000021671 3 1 1 80 1 177389688 177391997 TAACACAGAGGCCCTTTCC 59 177393290 177393309 ACATTGAGTTTGTCTGGTGC 59 NA Rattus norvegicus 81 RGD1565682 ENSRNOG00000025444 ENSRNOT00000035013 1 1 1 80 1 252104215 252104233 GAAGTGGTGAGTTTCAGGC 59 252103532 252104171 ATAACGGAGGAGTGGTCTG 59 NA Rattus norvegicus 81 Gli4 ENSRNOG00000021765 ENSRNOT00000077773 1 1 1 136 7 116675160 116675815 TACCTGGCTTGACTCTGAG 58 116675915 116675933 ATTCCTGGTCAATGCTGTC 58 NA Rattus norvegicus 81 RGD1559578 ENSRNOG00000024233 ENSRNOT00000037415 1 1 1 80 10 98097887 98112422 AAAGATATGCAAGGAGCGAG 58 98097826 98097844 TCGGAAGCTCATTGTTGTC 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 2 3 4 89 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342959 76342978 GAATCACATCGACACCAGTC 59 NA Rattus norvegicus 81 Tmem139 ENSRNOG00000028024 ENSRNOT00000033775 1 1 1 81 4 71650747 71650765 TTATGGAACGGTGTCTCCA 58 71650810 71651047 TCATTGACCTGTGCATTGC 59 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623,ENSRNOT00000078227 3 2 2 82 9 14550180 14550560 AGGAAGTCGAATCACTTATGTG 58 14550119 14550139 AATCCTCACTGATACAATGGG 58 NA Rattus norvegicus 81 Chrna2 ENSRNOG00000017424 ENSRNOT00000023475 1 1 1 80 15 42817405 42817424 TTGCTCAGCTCATAGATGTG 58 42817862 42820346 TGTAGTCATTCCATTCCTGC 58 NA Rattus norvegicus 81 Slpil3 ENSRNOG00000049280 ENSRNOT00000076624 2 1 1 80 3 160776306 160776324 GAAAGGAGAAGTGTTGCGA 58 160775786 160776263 ACTTCTTCATGACTGGTCTG 57 NA Rattus norvegicus 81 Olr1325 ENSRNOG00000061476 ENSRNOT00000084016 1 1 1 60 8 43722930 43722948 TCTAAAGCCTTCAGCACCT 59 43722967 43722990 CAGAACCATAGAAGATAGCAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slpi ENSRNOG00000046699 ENSRNOT00000076191 3 1 1 120 3 160801488 160801507 AAACGTGAGAAACCAGAGTG 59 160800913 160801405 TCTTCTTCACTGGTCCACG 59 NA Rattus norvegicus 81 Vom1r26 ENSRNOG00000032657 ENSRNOT00000048309 1 1 1 60 14 62309960 62309979 ACTTCCACATAAGACCTGCC 60 62309997 62310020 GTCACCAAGATAAGGATAGTACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 3 3 3 80 15 51815486 51815505 GCCACGATTCTATAACAGCC 59 51815545 51817860 GAGTAGTAGATAACCTGTGCCC 60 NA Rattus norvegicus 81 Rn60_20_0048.4 ENSRNOG00000048140 ENSRNOT00000071931 3 1 1 64 20 2623331 2623349 TCACTTACAGGGAGCACTG 59 2637497 2637517 AAGGGTCACATGTACCTTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 3 2 2 84 16 758331 758431 AACAGATGGTCATTGATGTCC 58 758477 758495 TTGTACATCTTGGCCAGCT 59 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000015125 ENSRNOT00000020493 2 1 1 94 4 157327783 157328047 AAAGAAGAGCGGAGGAACC 60 157328104 157328123 ACTGGATATTTGACCCAGCC 60 NA Rattus norvegicus 81 Rn60_7_1164.3 ENSRNOG00000051320 ENSRNOT00000076415 3 1 1 60 7 116531957 116531975 GTGACCTGGATGAGAAGGA 58 116531915 116531934 TAGATTCCCGGTATCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map7d1 ENSRNOG00000010237 ENSRNOT00000065871 2 1 1 80 5 144251646 144251847 GCAGAAACCAAGAAGCAGG 60 144251486 144251506 CCGAGTTTCTACAGCTTTCAC 59 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 2 1 1 61 7 140467185 140467203 TACGCTTCCTCATGAACCT 58 140467228 140467661 CATCTCAGAGAACACGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Cmtm5 ENSRNOG00000016828 ENSRNOT00000022664 3 1 1 93 15 33601590 33601609 GAGTTCTTCATCACACTGGC 59 33601665 33602162 GGAGGAAGTCCAGACAAGG 59 NA Rattus norvegicus 81 Idi2 ENSRNOG00000046404 ENSRNOT00000045035 2 1 1 93 17 57702166 57702708 CAGGACCAGATTTCCATAATGG 59 57702094 57702112 AGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817,ENSRNOT00000030760 3 2 2 80 10 39674035 39676985 GGAAGAAGTAGAGGACAGTGG 60 39677025 39677045 TCGTCATAGTAGTGGGTAAGC 59 NA Rattus norvegicus 81 RGD1561197 ENSRNOG00000033366 ENSRNOT00000040244 2 1 1 80 15 67092878 67092950 AAGAGTCCAATGAGACCGC 60 67092991 67093012 TCTCTAAATCTCCAGAGGTGTG 59 NA Rattus norvegicus 81 Bpifb5 ENSRNOG00000025238 ENSRNOT00000034798 2 1 1 80 3 149711364 149711793 GCTACACATCATTCTTCCTCC 59 149711835 149711853 CCTTCTGTGAACTCTGTGG 58 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 1 2 3 80 14 22725131 22726259 CAGTGATGTTCTAGGTAGACCC 60 22726299 22726318 TCCCAGAAGGTTCGAATGAG 60 NA Rattus norvegicus 81 Nanos2 ENSRNOG00000038088 ENSRNOT00000057963 1 1 1 60 1 79894541 79894559 CCCTTTGACAGGTGGAGAG 60 79894581 79894601 TCTGAATTATACCCAGCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nanos2 ENSRNOG00000038088 ENSRNOT00000057963 2 1 1 60 1 79894803 79894822 GGCATTACGTATGTCCTCTC 58 79894843 79894863 CAATACTTGAGTGTATGCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nanos2 ENSRNOG00000038088 ENSRNOT00000057963 3 1 1 60 1 79894802 79894822 AGGCATTACGTATGTCCTCTC 60 79894843 79894862 AATACTTGAGTGTATGCGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346,ENSRNOT00000004524 1 2 2 80 10 107521531 107521552 TATGCAGCTTACAGATATGCTC 58 107520425 107521493 CGCATAGACTCTACCATAACTG 58 NA Rattus norvegicus 81 LOC691921 ENSRNOG00000026982 ENSRNOT00000031297 2 1 1 92 7 27221591 27224097 GCCTGACCTGACAATACCT 59 27224153 27224171 ACCTGAGATTCACGGTGTC 59 NA Rattus norvegicus 81 Fibp ENSRNOG00000020567 ENSRNOT00000027927 3 1 1 80 1 220840883 220840903 ACCAAGAAAGACCTTGATGAC 58 220840944 220841858 CTTGAAGTTGTCAAACTGCC 58 NA Rattus norvegicus 81 Tbc1d10b ENSRNOG00000017349 ENSRNOT00000023706 1 1 1 80 1 198648354 198648633 GTTTCCAGAAGGTAAAGCTACG 59 198648295 198648315 TATTAGACAGGTACTGCCAGG 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773,ENSRNOT00000010419 3 2 2 81 6 25099679 25100258 AAGAGGATGCAGGATCAGC 60 25100302 25100321 CATCAACCACTTCTAGCAGC 59 NA Rattus norvegicus 81 Clk4 ENSRNOG00000003714 ENSRNOT00000005048 3 1 1 80 10 36732841 36732861 AACCAGCTAGATTGGGATGAG 60 36732900 36732999 CAGCATAAATTCCTTTAACGGC 59 NA Rattus norvegicus 81 Cracr2b ENSRNOG00000019199 ENSRNOT00000025964 3 1 1 100 1 214443042 214443137 TCAGGATTTGCAGGGTCTG 60 214443201 214443219 CTGTCAAGAAGCCAGTGTG 59 NA Rattus norvegicus 81 Myt1 ENSRNOG00000017346 ENSRNOT00000031448 2 1 1 80 3 177336712 177336734 AGATACGAGACTTGAATGAGTCC 60 177336770 177339218 TCTCCATGGAAGATATCTGAGAC 59 NA Rattus norvegicus 81 Jazf1 ENSRNOG00000027026 ENSRNOT00000039580 3 1 1 80 4 82963790 83137423 CAACCACATCGATACAGATCC 59 82963730 82963749 TTAATGTAACTGAGGGCGAC 58 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000005829,ENSRNOT00000087045 1 2 2 87 7 67341727 67344075 TTTCATCTGGACCGATTCAG 58 67341659 67341677 GTATATCCACGGGTTGCAG 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 3 3 8 80 13 68709933 68710069 ACACTGCTCAGTTGAAAGC 59 68710112 68710131 TTACTCGGTCCATCTTCAGC 60 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321,ENSRNOT00000085022 2 2 2 80 8 49238672 49239753 TGACATCAGAGATCAAGTCAC 58 49238612 49238630 GCTGCAGGAAGTAGTTGAG 58 NA Rattus norvegicus 81 LOC102551255 ENSRNOG00000049257 ENSRNOT00000074410 2 1 1 60 1 129613621 129613640 TTACTCTGGGCACGTATCTC 59 129613663 129613681 AGCACAAAGGGAATGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.28 ENSRNOG00000051270 ENSRNOT00000076132 1 1 1 60 5 77396339 77396359 ATTCATCAGAGATTCCCACAC 58 77396299 77396318 GGCTTTACCACATTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 3 1 1 61 18 40723983 40724710 GAAGTTGGGACTCTATATGAGTG 58 40723944 40723963 TTGCAGTAATGTAGGACCAG 57 NA DesignNoJunction Rattus norvegicus 81 Chrne ENSRNOG00000003777 ENSRNOT00000005050 1 1 1 80 10 57242822 57242841 TAACCAACCTCATCTCACTG 57 57242588 57242710 GATAGTCTTGCCATTCAATTCC 58 NA Rattus norvegicus 81 Adam28 ENSRNOG00000014518 ENSRNOT00000058715 3 1 1 80 15 50420511 50425840 TCTCCAGTTCCAGCAAGTG 60 50420449 50420473 CAGATGAAGTCTTATGGGATAAACC 60 NA Rattus norvegicus 81 Rn60_6_0926.2 ENSRNOG00000051280 ENSRNOT00000072892 1 1 1 60 6 82908661 82908679 AAACCAAGAACCTCAGCCT 59 82908701 82908721 TCCTTCTGGTAAATTCGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr153 ENSRNOG00000010718 ENSRNOT00000014444 2 1 1 80 5 169460399 169460831 GACTCAGACAACGAGACCA 59 169460874 169460893 GTCACCTCCATAGTCAAGGG 60 NA Rattus norvegicus 81 Pofut1 ENSRNOG00000010104 ENSRNOT00000013730 3 1 1 81 3 148728952 148729982 CCATGAAGGAAGGAAATCCT 57 148730026 148730044 ATGCCTGTGAACAACTCTG 58 NA Rattus norvegicus 81 Olr298 ENSRNOG00000061803 ENSRNOT00000091487 1 1 1 60 1 212991601 212991619 TTCTCAGAAATGCCTCACC 58 212991559 212991577 CAGCCATGTATAGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867,ENSRNOT00000091150 1 2 2 80 1 214194947 214194968 TCCTATAGAACAGGAAGACCAG 59 214195007 214196548 GATGTCCTGGAAAGTTCTGAG 59 NA Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 3 2 2 80 1 229049451 229050281 AGATCCAAAGTTCACAATCCAG 59 229050321 229050340 GTGTTCTCTTGACCTTGACC 59 NA Rattus norvegicus 81 Srd5a2 ENSRNOG00000027042 ENSRNOT00000008983 3 1 1 80 6 25292361 25292381 AGCCTACTACCTGGTTTACTG 59 25288086 25292320 AACAGGAAGACACCAAAGCT 60 NA Rattus norvegicus 81 Hoxb3 ENSRNOG00000008313 ENSRNOT00000011027 2 1 1 212 10 84193591 84193610 AAAGAGTCAAGGCAAACGTC 59 84194614 84194632 CTCCTTCTCCAGCTCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286,ENSRNOT00000066137 3 2 2 88 10 105757218 105771725 GGAGGCAGGATGAAGACTC 60 105752621 105752641 GTACTTAAAGGAGAAGGCTGC 59 NA Rattus norvegicus 81 Ebi3 ENSRNOG00000050509 ENSRNOT00000072031 1 1 1 85 9 11111691 11111709 CCTTCCCGGACATCTTCTC 60 11111265 11111642 TTCAATAGGTCCCACCTGG 59 NA Rattus norvegicus 81 AABR07054332.1 ENSRNOG00000005116 ENSRNOT00000006859 1 1 1 108 3 148283640 148283662 GGTGTTAAGTCCAAGGAGGT 59 148283733 148283751 GCTTGCCAATCTTGTTCCC 60 NA Rattus norvegicus 81 Olr1160 ENSRNOG00000049729 ENSRNOT00000050608 2 1 1 60 8 19995043 19995064 ATTTGTCACCCTCTACACTACC 60 19995083 19995103 TGAGCAAACATCTACACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn4 ENSRNOG00000002625 ENSRNOT00000003568 2 1 1 80 13 35730505 35736468 GGGTATTTGCAAGATCTCCA 58 35730444 35730465 CAGATAACGAATTTCTGCTGAC 58 NA Rattus norvegicus 81 Ccl12 ENSRNOG00000029768 ENSRNOT00000031626 3 1 1 80 10 69477671 69477690 CACATTCGGAGGCTAAAGAG 59 69477729 69478134 CAGTACAGTTCTGAAGATCACAG 59 NA Rattus norvegicus 81 Olr304 ENSRNOG00000049502 ENSRNOT00000041953 3 1 1 60 1 213132414 213132432 CTGCATCCAGTTATAGCCC 58 213132453 213132474 ATGAGGACTGAGTATAGCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc4 ENSRNOG00000061040 ENSRNOT00000083017 2 1 1 80 20 26828464 26828484 GGTGCAACAGAAGTGAAAGAG 60 26828526 26829363 ATCAACAAACTCCTGCCGA 60 NA Rattus norvegicus 81 LOC100359431 ENSRNOG00000038276 ENSRNOT00000058263 1 1 1 60 1 77721702 77721720 AATCCAGTGCTCCAAGACC 60 77721660 77721678 CTTGAACACAGTGCTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864 3 1 2 83 5 90349008 90349026 CTAGGTTCCTTGTGGTGGG 60 90349071 90352001 TAGAGACTGGAACTGACTCCA 60 NA Rattus norvegicus 81 Prss55 ENSRNOG00000047258 ENSRNOT00000072994 1 1 1 95 15 47439005 47442520 CAAATGTTGAATGCGGTGTG 59 47438929 47438947 ATGGGAATTCACCCACCTC 59 NA Rattus norvegicus 81 LOC100909487 ENSRNOG00000042748 ENSRNOT00000066360 1 1 1 85 4 82215067 82215251 ATTTGGAGACCCACCTCAG 59 82215300 82215318 CAACATGAGTTACACCGGC 59 NA InUTR Rattus norvegicus 81 LOC100909487 ENSRNOG00000042748 ENSRNOT00000066360 2 1 1 86 4 82215066 82215251 AATTTGGAGACCCACCTCAG 60 82215300 82215318 CAACATGAGTTACACCGGC 59 NA InUTR Rattus norvegicus 81 RGD1562977 ENSRNOG00000034215 ENSRNOT00000046165 2 1 1 60 12 888611 888629 CACAACTCTGAACCGTTGC 60 888569 888588 CTCGAATTTAGCAGACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pax1 ENSRNOG00000024882 ENSRNOT00000067983 2 1 1 87 3 141583523 141583919 AATATACCCAGTCGGCTTCC 59 141583969 141583987 TATACTCCGTGCTGGTTGG 59 NA Rattus norvegicus 81 Abi3 ENSRNOG00000005575 ENSRNOT00000007897 1 1 1 80 10 83644537 83644930 CTTGGAGAAAGTGGTGACG 59 83644475 83644493 CAGATGACGGTTCCTTCAG 58 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 1 2 2 84 1 72639156 72639174 AAAGACTCTGGAGCCAGAG 59 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076539,ENSRNOT00000076320 3 3 5 82 13 77942361 77942382 TTATGAATATGCAGATGAGCGG 59 77942425 77945180 CAGCCATTTCCTGAAGGTC 59 NA Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000076786 2 1 2 83 2 30666586 30666605 CACTAGGCAAAGAACTTGCA 59 30666650 30667401 TATCCGGTGATCAGACTTCC 59 NA InUTR Rattus norvegicus 81 AABR07051746.1 ENSRNOG00000047162 ENSRNOT00000072306 3 1 1 60 3 20695931 20695950 CATCCAGATGACACAGTCTC 58 20695890 20695910 GATGGTGACAATTTCTTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxf1 ENSRNOG00000049906 ENSRNOT00000073858 2 1 1 87 19 53013297 53014614 AGAATTGCAAGGCATCCCT 60 53014665 53014683 GGCCATGGCATTGAAAGAG 60 NA Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 1 1 1 93 10 13073543 13073675 TCTTGTCAACACCCTTGGG 60 13073468 13073486 TGCAGTGTAACCCATCAGG 60 NA DesignNoJunction Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000090815 1 1 2 80 4 117583564 117584158 CTATGTTCTGGAGGCATCAC 58 117583503 117583522 CTTGCATCAGTATCCAGTCC 58 NA Rattus norvegicus 81 AABR07059215.1 ENSRNOG00000031486 ENSRNOT00000046248 3 1 1 86 4 9043574 9060457 ACTGTAGTAGCAACAACAGC 58 9043507 9043526 TGTTATTGCTGTTGTTGCTG 58 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 2 2 2 80 15 36940141 36940159 GCACTGTACTTTGCAAAGC 58 36940202 36942782 AACTCTTGAAAGGGTCTCCA 59 NA Rattus norvegicus 81 Lsm6 ENSRNOG00000049370 ENSRNOT00000071471 3 1 1 89 19 32781420 32781438 GCATTGGAACAGACAGAGG 59 32781488 32783514 TATGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 LOC100911631 ENSRNOG00000025247 ENSRNOT00000034771 2 1 1 60 1 220097972 220097993 CTGATCGTCTTATTGGGAACAC 59 220098012 220098032 GAGACTCGGCTTATCAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000061954 2 1 2 80 1 4494446 4494464 CAATGACACGTTGGAGCAG 60 4485707 4494407 GTATATCCCTTCTTGTTCTTGGAG 59 NA Rattus norvegicus 81 Olr1165 ENSRNOG00000047835 ENSRNOT00000044463 1 1 1 60 8 20230189 20230210 GTTTACTGTGCTTGGAAATGTG 59 20230231 20230249 GTGGAGGTGGGAATCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1364 ENSRNOG00000048685 ENSRNOT00000060994 3 1 1 60 10 12385345 12385367 AACCCTTTCATCTATAGCCTGAG 60 12385307 12385326 TGAGCAGTTTCCTTAAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1166.1 ENSRNOG00000031770 ENSRNOT00000041702 3 1 1 60 7 116616942 116616960 AAGGGCAAGATTCTAGCCA 59 116616900 116616918 TCTTCGAGTGCTTGATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gle1 ENSRNOG00000015237 ENSRNOT00000020630 2 1 1 80 3 8522361 8522379 GAAGCAGTACCAGGTCCAG 60 8522421 8525943 CTCGTGATGGCTTCAATTCTG 60 NA Rattus norvegicus 81 Fahd1 ENSRNOG00000014727 ENSRNOT00000019767 3 1 1 60 10 14215364 14215382 CAAGAGCTTCACGTCATCC 59 14215322 14215341 GTCAGGAATCTTCTCCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685406 ENSRNOG00000033407 ENSRNOT00000048225 1 1 1 107 4 82639920 82643831 TGCTTCAGAGACAGTGTACTC 60 82643900 82643918 TGTATGAAATGGTCCGCGA 60 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892,ENSRNOT00000025871,ENSRNOT00000065483 3 3 3 80 18 57728704 57743436 TTCCCTGGATAGGTATTATGCC 59 57743476 57743495 ATTAATGCGATGCGTAGAGG 58 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022428 1 1 3 80 3 150068052 150068071 GAAACTGACCATCAGTACCT 57 150067668 150068010 AGATTTCACACCTTTCCCTG 58 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022428 3 1 3 80 3 150068052 150068072 GGAAACTGACCATCAGTACCT 60 150067669 150068011 GATTTCACACCTTTCCCTGG 59 NA Rattus norvegicus 81 LOC684499 ENSRNOG00000032728 ENSRNOT00000040211 2 1 1 94 11 67332862 67336700 TCATTAAGATGGATGTAGGGTG 58 67336755 67336773 CCGGTAACCATGAAGTTCC 58 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 3 2 2 81 1 185478309 185479014 GACCCAAGATCATCAAGTCC 58 185479057 185479076 GGAACATTAAGGTTCCTCCG 58 NA Rattus norvegicus 81 Brinp2 ENSRNOG00000005592 ENSRNOT00000007455 1 1 1 80 13 75969009 75970213 CACTCTTGGAGGAGAAGAGTC 60 75968949 75968969 ACACCTCCTAGTGTTTCTGAC 60 NA Rattus norvegicus 81 Brinp2 ENSRNOG00000005592 ENSRNOT00000007455 2 1 1 80 13 75952496 75954233 GAAGAGTCAGAAGAATTCCAGAC 59 75952438 75952456 GTACTGGGAGATGGCTGTG 60 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 3 2 2 80 19 33334778 33340695 GCCAGAGAAGGAAATGACAG 59 33334717 33334737 ATATTCTCCAGAAGCCAAGTG 58 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 2 2 2 80 1 259065527 259065545 GCATTCTTCACCTCCTGAC 58 259063837 259065484 CTTCTCTGGTGTTTACCAGC 59 NA Rattus norvegicus 81 Ywhaq ENSRNOG00000051650 ENSRNOT00000077786 1 1 1 80 6 43493113 43493132 AGCTGATCAAGGACTATCGG 59 43471403 43493073 ACTTATCCAACAATTCCAGGAC 59 NA Rattus norvegicus 81 Pamr1 ENSRNOG00000005348 ENSRNOT00000064282 3 1 1 80 3 92443836 92443854 GGGTTATACCATCCCATGC 58 92443897 92450307 TCAAAGATGGTACAACCTGG 58 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 2 2 2 80 7 139715019 139715446 GGCCAAAGGTCAGATTGAG 59 139715487 139715508 TTAGTACCAAGTTTGGAACCAC 59 NA Rattus norvegicus 81 AABR07047232.1 ENSRNOG00000048316 ENSRNOT00000075288 3 1 1 97 5 24926091 24926109 TTGCTCTCCACAAGATGCA 60 24924894 24926032 GGACTCAAAGTTGTTCCTGTC 59 NA Rattus norvegicus 81 Ubxn1 ENSRNOG00000019666 ENSRNOT00000026651 3 1 1 80 1 225068568 225068689 AGTTGGTCCTGAAGGATCTG 59 225068730 225068750 TTAGTCTGTTCTTGCCTCTCC 60 NA Rattus norvegicus 81 Prpf6 ENSRNOG00000051498 ENSRNOT00000083423 2 1 1 80 3 177124483 177131338 TTAGCCAGGTATCTGACTCAG 59 177131377 177131398 GGATCATAGAGTTTAGGTCCGT 59 NA Rattus norvegicus 81 A3galt2 ENSRNOG00000005935 ENSRNOT00000007851 1 1 1 96 5 146940273 146940291 AAGAAGAGACTCCTGTGGC 59 146940350 146940527 TGAACACTTCAAAGAGCCTG 59 NA Rattus norvegicus 81 Rn60_6_1087.2 ENSRNOG00000052719 ENSRNOT00000090480 2 1 1 60 6 99249924 99249944 CCTGGACATCAAATATGACCC 59 99249966 99249984 TGGCACCACATAGAAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppil4 ENSRNOG00000015552 ENSRNOT00000021437 2 1 1 80 1 1905366 1906186 ACGAAGGAGCAATTAGATAGTG 58 1906224 1906245 TACTTCTTCAGCTGATCTTCCT 59 NA Rattus norvegicus 81 Ppil4 ENSRNOG00000015552 ENSRNOT00000021437 3 1 1 80 1 1905367 1906187 CGAAGGAGCAATTAGATAGTGG 59 1906225 1906246 CTACTTCTTCAGCTGATCTTCC 58 NA Rattus norvegicus 81 Dip2c ENSRNOG00000015288 ENSRNOT00000020634 1 1 1 80 17 63764356 63770096 CTAGCTGGTGTAAAGATGTCTC 58 63770135 63770155 AGAAGGGTAAAGTTCACACTG 58 NA Rattus norvegicus 81 Hormad1 ENSRNOG00000021160 ENSRNOT00000066821 1 1 1 80 2 197684789 197688261 GGACAAGATATCTGGATGATCTC 58 197688298 197688319 ACTTAACTAGCTGTGAAGAACC 58 NA Rattus norvegicus 81 Hormad1 ENSRNOG00000021160 ENSRNOT00000066821 2 1 1 80 2 197684790 197688263 GACAAGATATCTGGATGATCTCTG 59 197688298 197688320 CACTTAACTAGCTGTGAAGAACC 60 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000088730 3 1 2 93 7 142877269 142877287 GGCTGCTCAAATTCATCCC 59 142877343 142878267 TATCTGCTGTGGGTATCTGC 59 NA InUTR Rattus norvegicus 81 Nxnl1 ENSRNOG00000042658 ENSRNOT00000080706 3 1 2 83 16 19996454 19996472 CTACAGAGGAGCAACAGGA 58 19995041 19996408 TACTCCTCAGGTCATCATGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100360056 ENSRNOG00000031802 ENSRNOT00000051411 2 1 1 60 1 141218138 141218160 CCTACTATACCCAGGTTTACCAG 60 141218180 141218198 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gimap8 ENSRNOG00000020169 ENSRNOT00000059173 3 1 1 94 4 78283445 78283564 TCTACCGATCCCTCTTTAGGA 59 78283620 78283638 TCCATCTGACTTCCTGCTG 59 NA Rattus norvegicus 81 Prrc1 ENSRNOG00000016433 ENSRNOT00000022017 3 1 1 80 18 52441145 52441166 CTGGATAAGACCAAGCATTCTG 59 52441205 52443477 GCCTCCAGATTTGATATACGG 59 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 2 1 2 70 10 43633056 43637224 CCACAAATGATACGGAAGGT 58 43637256 43637275 TTAAACAATGGCGGCTTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Smarcd3 ENSRNOG00000010077 ENSRNOT00000066598 1 1 1 80 4 7107619 7107639 ATGCTAAGTTTCTCCAGAGAC 58 7107680 7107820 TGTCATCACCTTGAGATCAC 57 NA Rattus norvegicus 81 Tcea2 ENSRNOG00000016288 ENSRNOT00000022073 1 1 1 80 3 177191280 177191298 GCAGAGTTCAGACGAGGAG 60 177191340 177192125 CCATCAGAAACATCCAAGAGC 59 NA Rattus norvegicus 81 Dytn ENSRNOG00000042181 ENSRNOT00000064447 2 1 1 80 9 70360831 70360849 GGAAACAGTCACTCACCCT 59 70359059 70360791 CACTTTAGACAACGGTATCTCAG 59 NA Rattus norvegicus 81 Cdca2 ENSRNOG00000025302 ENSRNOT00000031163 3 1 1 80 15 44391916 44391937 CATCTACTAAGACCTTTGTGCT 58 44390536 44391878 GGTTGTATCCCTTTCCATTCTC 59 NA Rattus norvegicus 81 Zc4h2 ENSRNOG00000056735 ENSRNOT00000084107 3 1 1 81 X 64893911 64908521 AGAGATCAGGAACAAGACTCTG 59 64893851 64893869 CTCTTCAGACTCCAGAGCC 59 NA Rattus norvegicus 81 Plekha4 ENSRNOG00000020942 ENSRNOT00000028423 2 1 1 80 1 101522453 101522471 TGACACATTGGAAGACCTG 57 101522515 101525514 GGTAGTCCACAATCTTCCC 57 NA Rattus norvegicus 81 AABR07049880.1 ENSRNOG00000049397 ENSRNOT00000010885 3 1 1 80 5 142315635 142316978 ACAACTGGGATACCAGTGAG 59 142317020 142317039 GCTGACTGATGTTCTTTCCC 59 NA Rattus norvegicus 81 Gnrh1 ENSRNOG00000013441 ENSRNOT00000018006 2 1 1 81 15 44444451 44444470 CCAGAACTTCGAATGCACTG 60 44444512 44445884 CTCTTCAATCAGACGTTCCAG 59 NA Rattus norvegicus 81 Igf2r ENSRNOG00000014997 ENSRNOT00000021840 2 1 1 80 1 48227476 48228499 TGTGCTGTGGATAAGAGTGG 60 48228540 48228560 GAGCTGAATGTGTCCTTTCTC 59 NA Rattus norvegicus 81 Mex3b ENSRNOG00000025142 ENSRNOT00000039748 3 1 1 115 1 144832037 144832055 AGAAGAGCGTGAACATGAC 58 144832969 144832987 GTAAGTGTTGGTCTTCGCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 2 3 4 108 5 78369878 78369896 GAGAGTTTGCCATGTTGTG 57 78368993 78369806 ATGATAATGTCAGCACCGG 58 NA Rattus norvegicus 81 Olr757 ENSRNOG00000032386 ENSRNOT00000041799 3 1 1 60 3 102630387 102630408 CATAGCTATCTGTAAGCCTCTG 58 102630426 102630447 TGAAATGCATATTCTAGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhpn2 ENSRNOG00000011885 ENSRNOT00000016148 2 1 1 80 1 91643727 91645626 GTGTACTGCTCGGTAAAGGA 60 91645669 91645687 TCTTGCACAGGTTAGCCTC 60 NA Rattus norvegicus 81 Slc26a11 ENSRNOG00000030537 ENSRNOT00000054987 3 1 1 80 10 108494960 108495040 CTCAGGATATCTCTTTGTTCCTC 58 108495658 108495677 CGGTAATTATTCTGGGAGGC 58 NA Rattus norvegicus 81 Ehf ENSRNOG00000007484 ENSRNOT00000010580 1 1 1 80 3 93186889 93189342 CTGAACAAACTGATCCTTCCA 58 93186829 93186848 CTACTGTGCTACCATAGCTG 58 NA Rattus norvegicus 81 Tmem87a ENSRNOG00000008455 ENSRNOT00000067836 1 1 1 80 3 112164392 112167681 GAAGTCTACAATTTCAAGGCAG 58 112164333 112164351 GTATCTCCCAGACAAGCCT 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232,ENSRNOT00000051009 3 2 2 82 2 233617249 233617268 CTACCCAGACATGTCCACTC 60 233617312 233619811 GATTCTTGAACCAAACCCGG 60 NA Rattus norvegicus 81 Polr3k ENSRNOG00000017843 ENSRNOT00000024096 1 1 1 93 3 177376274 177378315 TCTACTGCAGAGCCATGTC 59 177378372 177378390 AGAAGGTGGTCATTGGCTC 60 NA Rattus norvegicus 81 Pla2g4f ENSRNOG00000008135 ENSRNOT00000010959 1 1 1 80 3 112083068 112083087 GAAACCCACCCATACTACGA 59 112082241 112083028 AGCTTTGGACAATTTATCCGTG 60 NA Rattus norvegicus 81 Zfp655 ENSRNOG00000060129 ENSRNOT00000084637 1 1 1 80 12 11142980 11142999 GCCAGTCTGAATGTCTTTCC 59 11132225 11142940 TTGGAAATCCATCAGTGTATCC 58 NA Rattus norvegicus 81 Klhl4 ENSRNOG00000005215 ENSRNOT00000006992 3 1 1 80 X 86201636 86201654 AGCTAGGCAACAAGATCTG 57 86201697 86208522 TCTAGATCTGCAAGCAACTG 58 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613,ENSRNOT00000079263 2 2 2 80 13 91844279 91844297 GTGGCTTTCATCGTCTTCC 59 91843471 91844235 CAGGTACGTTCCTTTGTGC 59 NA Rattus norvegicus 81 Snn ENSRNOG00000058739 ENSRNOT00000088279 1 1 1 60 10 4638440 4638462 CTTTCTACTGGTGCAGTATTCTG 59 4638402 4638423 CATCAATTTGGCCTTTCTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssna1 ENSRNOG00000011093 ENSRNOT00000014993 2 1 1 96 3 2489577 2489960 CTACCTCAAGATCCTGGAGAG 59 2489501 2489519 ACTCTTCTGGTCTGAAGCC 59 NA Rattus norvegicus 81 Ccdc9 ENSRNOG00000048848 ENSRNOT00000075700 2 1 1 80 1 78215200 78215420 CCTCGTGCCTATAGTGACC 59 78215138 78215157 GGACTGAGAGGATTTGGGAG 60 NA Rattus norvegicus 81 Fam103a1 ENSRNOG00000019426 ENSRNOT00000026385 2 1 1 98 1 143588309 143588327 ATACTTGAAACGCCCTCCT 59 143588389 143589064 TTATCTTGCAGCCAGTTGC 59 NA Rattus norvegicus 81 Hcar2 ENSRNOG00000026653 ENSRNOT00000032249 1 1 1 60 12 38161291 38161314 CCTTAGCTTTACCTACATGAACAG 59 38161331 38161351 TGGGCTGGAGAAATAGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja4 ENSRNOG00000014357 ENSRNOT00000019246 1 1 1 60 5 145375307 145375325 CAATTTGACCACCGAGGAG 59 145375265 145375283 GGCTGCATTTACAAATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560175 ENSRNOG00000027756 ENSRNOT00000046208 3 1 1 86 11 61473236 61474171 CAGCACAGAAAGAAGAACCG 60 61450433 61450454 TCCTATTCTGTTTATCCCAGCA 59 NA Rattus norvegicus 81 Hoxa7 ENSRNOG00000046361 ENSRNOT00000071729 3 1 1 83 4 82184722 82185730 CAGTTCAGGACCCGATAGG 59 82184657 82184678 TTGAAGTGGAATTCCTTCTCCA 60 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458,ENSRNOT00000084445,ENSRNOT00000015158 3 3 3 83 19 49476092 49476110 GTGAGAATCCACAGAGCCA 59 49476155 49478936 GGTTTCCAGCTTATACTGTGC 59 NA Rattus norvegicus 81 Rn60_X_0651.2 ENSRNOG00000051255 ENSRNOT00000076745 2 1 1 60 X 64157508 64157527 GAATATTGTCTCCAGGGCTC 58 64157467 64157486 AATCCTGATCATCAATGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc37a1 ENSRNOG00000001169 ENSRNOT00000001544 1 1 1 80 20 10075489 10075507 TGATCTCTGACCGTCTGGA 60 10075551 10076413 AGAACACATAGAGCGTGGG 60 NA Rattus norvegicus 81 Wnt9a ENSRNOG00000003066 ENSRNOT00000058327 1 1 1 85 10 45659228 45680170 CCTACTTCGGGCTAACAGG 60 45680219 45680237 CTTGTAGTGAGCTTGGGCT 60 NA Rattus norvegicus 81 Rn60_X_0695.2 ENSRNOG00000051338 ENSRNOT00000076189 2 1 1 60 X 68596485 68596504 TCTACCGTTCCTAGCTAGTG 58 68596444 68596462 TCTGGCGTCAATCATCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690251 ENSRNOG00000048136 ENSRNOT00000075655 2 1 1 80 11 72897644 72897665 TCAGAATTGGTTGAATGACCAG 59 72897890 72901973 AAGAAGTGGACCTTGTCGG 60 NA Rattus norvegicus 81 Man2b2 ENSRNOG00000061779 ENSRNOT00000078562 2 1 1 80 14 78948145 78949782 CCTTTCTCTAACAGGTCTGG 57 78949824 78949843 GTTAGGATACACGCCATCTG 58 NA Rattus norvegicus 81 Fzd3 ENSRNOG00000047211 ENSRNOT00000071464 3 1 1 80 15 48650114 48650134 CCTATAGTGAGTGCTCAAAGC 59 48646469 48650073 AATCTGGAAACCTACTGCAC 58 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 1 2 2 84 3 112371000 112371021 CCTACCACCTCTGATAATAGGA 58 112370312 112370957 TTCATCAGGTAGAACAGTCAG 57 NA Rattus norvegicus 81 Acer1 ENSRNOG00000047368 ENSRNOT00000075180 1 1 1 80 9 10088436 10088454 AGTCAATGCCTATGCCCTC 60 10088494 10091283 CTGTTGCTAGTCTTCTTGTACTC 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 1 4 4 89 12 19760520 19760538 CTCTTCAGGAAGGGAAAGC 58 19754106 19760470 GATCAATATACTTGCCTGTTCC 57 NA Rattus norvegicus 81 Senp5 ENSRNOG00000024794 ENSRNOT00000034757 3 1 1 80 11 72064891 72064909 ATTTGCTGACTGAAGCCAG 59 72064950 72066354 GTGGAATACACTTTGTAACAGC 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 3 2 2 80 17 66256284 66258073 AAACTATGAGGAAGCCCTGAG 60 66256224 66256244 CCGTCATCCATGTTGATATCC 59 NA Rattus norvegicus 81 Otog ENSRNOG00000010983 ENSRNOT00000068434 3 1 1 80 1 102266345 102266364 TCTGTCAGTCTCTTCCTCTC 58 102266406 102267208 CAGCTGGATCCTTATACCTC 57 NA Rattus norvegicus 81 Nkpd1 ENSRNOG00000043378 ENSRNOT00000067272 2 1 1 125 1 80430047 80431080 AAATCATGACGCTGATGCA 58 80431169 80431187 GAAACACCAGGAACCACAG 59 NA Rattus norvegicus 81 Sergef ENSRNOG00000011488 ENSRNOT00000015352 1 1 1 81 1 102461688 102527982 GGTAATTAGGGACAAGTGCTG 59 102461627 102461645 AGTCCAGACATTGGACTCG 59 NA Rattus norvegicus 81 Mnx1 ENSRNOG00000046959 ENSRNOT00000072287 2 1 1 80 4 2377912 2377930 CTCAACAAGTACCTGTCGC 59 2377306 2377868 CCAAATCTTCACCTGGGTC 58 NA Rattus norvegicus 81 Fstl5 ENSRNOG00000047002 ENSRNOT00000076793 3 1 1 80 2 175187206 175189640 CTTTACAGGTGATCACTCTGG 58 175189682 175189700 TGTCAAACTGTTTCCCGAC 58 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455,ENSRNOT00000064332 3 2 2 80 1 78711572 78711592 TCTGTTGTAGACTCCAGTGTC 59 78711631 78714759 GAACATATTCCTCAGGAGTTCC 58 NA Rattus norvegicus 81 Jmjd4 ENSRNOG00000022438 ENSRNOT00000039012 1 1 1 80 10 45799478 45799497 TACATCCAAGGAGGCTACTC 58 45799540 45802196 ATCCACCAAGGAGTCTCTG 58 NA Rattus norvegicus 81 Mrpl22 ENSRNOG00000027039 ENSRNOT00000029238 1 1 1 80 10 43608558 43608576 ATTGATCAGGCTTTGGCTC 58 43608618 43609817 TTGTGCTTCTAAGAGAACCTC 58 NA Rattus norvegicus 81 Mrpl22 ENSRNOG00000027039 ENSRNOT00000029238 3 1 1 81 10 43608558 43608576 ATTGATCAGGCTTTGGCTC 58 43608618 43609818 CTTGTGCTTCTAAGAGAACCTC 59 NA Rattus norvegicus 81 LOC100911730 ENSRNOG00000046094 ENSRNOT00000072434 3 1 1 80 1 214448883 214449192 GTTACGCTTGTACTTCATCCT 58 214449232 214449252 TGATAGTAGACATAGGCCAGG 58 NA Rattus norvegicus 81 Cd209a ENSRNOG00000040128 ENSRNOT00000061727 2 1 1 80 12 2346957 2347246 TCAGTAGCTTCACAGGATACC 59 2346897 2346915 GCACAGAGAACACAGTGAG 59 NA Rattus norvegicus 81 Reg3a ENSRNOG00000006360 ENSRNOT00000008468 3 1 1 80 4 109478315 109479062 AGGTACGAGGTGAAGACTC 58 109479105 109479124 AAGAACGATAAGCCTTGGAG 58 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000059870 ENSRNOT00000010256 1 1 1 182 4 82214393 82214411 CAACTTCAAGTTCGGACGG 59 82212819 82212837 ATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Hapln2 ENSRNOG00000018870 ENSRNOT00000025624 1 1 1 132 2 187398443 187401296 TCTTGCAGTACTAAGGCGT 59 187398329 187398347 TTGTGAAAGACGGTGAAGG 58 NA InUTR Rattus norvegicus 81 Lgals5 ENSRNOG00000012557 ENSRNOT00000016897 1 1 1 80 10 66229058 66229235 CCATACCCGAACCTAACTG 57 66228996 66229014 GCCTGATATGACGATGGAC 58 NA Rattus norvegicus 81 Ccbl1 ENSRNOG00000016097 ENSRNOT00000021865 2 1 1 80 3 8754450 8754878 CCTTTAGGAAAGGTATTCTCTAGG 58 8754393 8754411 AGAGATGCACAAGACATCG 58 NA Rattus norvegicus 81 Reg3g ENSRNOG00000006579 ENSRNOT00000008665 2 1 1 80 4 109530200 109530220 ATTACTTCAACTGGGAGACGA 59 109529961 109530158 TCAGAAATCCTGAGGCTCG 59 NA Rattus norvegicus 81 Apcs ENSRNOG00000009086 ENSRNOT00000012092 3 1 1 100 13 91427423 91427441 CTGCTGTCATACCCTGGAC 60 91427231 91427360 TGATTGAGGTCTGTCTGAGC 60 NA Rattus norvegicus 81 RGD1561277 ENSRNOG00000023431 ENSRNOT00000061005 2 1 1 114 10 45201911 45201929 TGTCTGTGGACTTCACCTG 59 45202005 45205505 TCACATTGATTCAAGGACAGC 59 NA Rattus norvegicus 81 Nkain3 ENSRNOG00000013085 ENSRNOT00000017479 3 1 1 81 5 34499687 34644574 GCATGTATCTTTCAGCTTTGGA 59 34499627 34499648 TGCAGGAAATTTCCAAGAATGG 60 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045329,ENSRNOT00000045821 1 2 2 81 8 107231091 107231112 GTGCACAAGATTGAATTTGAGC 60 107231150 107231449 CTCTTCTTATCTCTTCCTTCCCA 59 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048400 ENSRNOT00000072216 1 1 1 60 2 234298988 234299006 CTTCCCATCCACCAGACTC 60 234299029 234299048 AGATACAACAGGTAAGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr63 ENSRNOG00000007675 ENSRNOT00000010081 2 1 1 81 5 39329619 39329638 TGATGCTTGTTAGTGCTGTG 59 39329681 39368761 TCTGTTTGCTGTTTCCACAG 59 NA InUTR Rattus norvegicus 81 LOC100910849 ENSRNOG00000047384 ENSRNOT00000072173 3 1 1 124 11 72086623 72086641 CAGTCACCTGAGGTCATGG 60 72084673 72084691 CAGAAGGTAGAGCCAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp867 ENSRNOG00000022431 ENSRNOT00000038951 1 1 1 87 10 45812119 45812522 TTCTATAGAGAAAGGGTGGGA 57 45811576 45811594 AGAGTTGGCTATGATGTGC 58 NA Rattus norvegicus 81 Fuca1 ENSRNOG00000009325 ENSRNOT00000012455 3 1 1 80 5 154271393 154271411 AACTGGAACTCGAAGGACG 60 154271455 154273689 TCGTATGTTCCTCTTCCGC 60 NA Rattus norvegicus 81 Eva1b ENSRNOG00000024818 ENSRNOT00000064972 2 1 1 63 5 144160738 144160756 GATGACTCCAGCCTGTCAG 60 144160783 144160801 TCTCAGGGTTAGCTAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143,ENSRNOT00000086745 2 3 3 80 3 93690172 93690194 GCTACTGCTACTACAATGAAACC 60 93688891 93690135 TTAATGCTTCAAAGTCCTGGAG 59 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000074608 2 1 2 60 13 91954393 91959724 AAAGAAGCCTCAGAAGAAACAG 59 91959742 91959763 CTGTAAATCTTCTCTGATGGCT 58 NA DesignNoJunction Rattus norvegicus 81 AC130866.1 ENSRNOG00000055188 ENSRNOT00000087788 2 1 1 176 4 113901181 113901199 AAGACCTGGTTCCAGAACC 59 113900944 113900962 GAAGAGTGACGAGTTGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Elfn1 ENSRNOG00000022767 ENSRNOT00000033551 3 1 1 135 12 16753146 16813487 GTTCAGCAGAGAACACTTCAG 59 16753031 16753049 GAGAATGGCTCCCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccne1 ENSRNOG00000014786 ENSRNOT00000020014 1 1 1 80 1 94487143 94487161 TTCCTTATGGTGTCCTCGC 60 94486984 94487102 ACTGATAACCTGAGACCTTCTG 59 NA Rattus norvegicus 81 Ccny ENSRNOG00000018123 ENSRNOT00000024545 1 1 1 80 17 62375846 62388764 GAGTCTCTTCATTAACCATCATCC 59 62375789 62375809 CTGTCGTCTAGAAAGATGGTG 58 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 1 2 2 80 12 17254617 17257980 CATTCAAGAAGGATGTGCAGG 60 17258021 17258040 CATCTGGGATGTCACCTCTC 60 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690,ENSRNOT00000085074 3 2 2 80 10 65691909 65691929 TATCGCTTCTACCTGATTGTG 58 65675976 65691869 GTAGGCTTCCTTAGTTTGGAC 59 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 2 2 2 80 13 48648526 48648544 CAGGATCTGGATAGCAAGC 58 48648587 48649273 GGACAGATCACTCTTGTTGG 58 NA Rattus norvegicus 81 Dscaml1 ENSRNOG00000016502 ENSRNOT00000022476 3 1 1 80 8 50049536 50049556 AAAGAAGAGGAAGGAGAAACG 58 50052118 50052342 CGGTTGTTCTTGCTTATCAG 57 NA Rattus norvegicus 81 Copz2 ENSRNOG00000009225 ENSRNOT00000055464 3 1 1 80 10 84724501 84725230 ACATCTTAAGGAAGAACGTGGA 60 84725269 84725289 CAACAATTTCATCCAGCACCA 60 NA Rattus norvegicus 81 Prox1 ENSRNOG00000003694 ENSRNOT00000004905 1 1 1 85 13 108406770 108406788 AGGAACTGTCCATCACCAG 59 108406836 108438727 CTCTGGAACCTCAAAGTCGT 60 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 3 2 2 82 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886900 151886918 GATCCTGAAGCAGGTAAGC 58 NA Rattus norvegicus 81 AABR07061378.1 ENSRNOG00000059069 ENSRNOT00000073799 2 1 1 60 4 120040914 120040935 TTCAGGAGCTACTTAGTAAAGG 57 120040875 120040893 ATTACTTGGGCTCTGTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911763 ENSRNOG00000020801 ENSRNOT00000002054 2 1 1 80 1 251334266 251336136 AACTGAAGAAATACAAGGGAGC 59 251334207 251334228 CAATGGAGCATATGATGTTTGC 59 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 1 2 2 123 17 78493164 78493182 GTGATGGAGAAGAGGAGGC 60 78492251 78493077 CAAGTTCAAGCTGCTCCAG 59 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 3 2 2 124 17 78493164 78493182 GTGATGGAGAAGAGGAGGC 60 78492250 78493076 TCAAGTTCAAGCTGCTCCA 60 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 3 2 2 80 X 118455764 118456312 ATAGCAGATGAAGGAAGCC 57 118455702 118455720 AGAGCAGACCAAATACTGC 58 NA Rattus norvegicus 81 Heatr4 ENSRNOG00000038183 ENSRNOT00000058127 1 1 1 80 6 107447923 107447942 AGAATGTTACTTGGGAGCTG 58 107446641 107447881 GCCATTCAATAATGAGTGCC 58 NA Rattus norvegicus 81 Appl2 ENSRNOG00000008174 ENSRNOT00000010986 2 1 1 80 7 26289354 26289372 GGAGCAGAGATGTTCTCCA 59 26289416 26292311 CAGTTCCACCTGAATGCTC 59 NA Rattus norvegicus 81 Rn60_X_0652.2 ENSRNOG00000038169 ENSRNOT00000058100 1 1 1 60 X 64220205 64220227 TACATCACCTACGAGAAAGATCC 60 64220167 64220185 CTTTGTAGTCGTCCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564792 ENSRNOG00000040214 ENSRNOT00000061894 3 1 1 68 4 8256682 8256700 AAGTGATGACGGTGATCGT 59 8256732 8256750 CTTGAGACTTCCTTCGGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr590 ENSRNOG00000049292 ENSRNOT00000073455 1 1 1 60 3 75957747 75957765 TCCACAGCTACAAACACCA 59 75957789 75957807 GCAGAGATCACAGAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000056436,ENSRNOT00000089402 2 3 3 80 2 195863943 195864922 TTGGAGGCTGAGAACTTAGAG 59 195863883 195863904 TGTACTGAAGTTTCCATGACTG 58 NA Rattus norvegicus 81 Rassf2 ENSRNOG00000021261 ENSRNOT00000028883 2 1 1 81 3 124579463 124580025 AGGTCACCTATGATGTGGC 59 124579400 124579419 TCTTCCTCCTGGAGTTTCTG 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 1 3 3 80 7 99175713 99177159 CATGTCGCAGAGAAAGTCC 59 99177203 99177221 TTTACTGCGGTCATCAAGG 58 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 3 2 2 80 4 129480479 129481524 CTGTATTCGAGCTGTACAACTG 59 129480420 129480440 AGGTGATGTAGTAGATGCCTC 59 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883,ENSRNOT00000081916 1 2 2 92 20 32099566 32099586 ACTCAGAGCAGAAGCTATGAC 60 32098255 32099512 AAGGAAATACCTCAGGCGG 60 NA Rattus norvegicus 81 Bcs1l ENSRNOG00000016754 ENSRNOT00000022632 1 1 1 80 9 81869869 81869887 CCTTCAGCATGAAAGTGGC 60 81869929 81870030 CCCTGATACCAAATGAAGTGG 59 NA Rattus norvegicus 81 Kctd21 ENSRNOG00000024793 ENSRNOT00000035743 2 1 1 90 1 162320890 162322289 ATCTGGGCAAACTGTTTCC 58 162322343 162322361 AGTGAGGTTGTGTAGAGCT 58 NA Rattus norvegicus 81 Kctd21 ENSRNOG00000024793 ENSRNOT00000035743 3 1 1 90 1 162320891 162322290 TCTGGGCAAACTGTTTCCA 60 162322343 162322362 CAGTGAGGTTGTGTAGAGCT 60 NA Rattus norvegicus 81 Zfand6 ENSRNOG00000013506 ENSRNOT00000018098 3 1 1 81 1 146757375 146757394 CAGTATCCGAGACAGAAGAC 57 146748757 146751732 GATACTGAAGATGGAGGATCAC 58 NA Rattus norvegicus 81 Psx1 ENSRNOG00000043179 ENSRNOT00000066033 3 1 1 60 3 574367 574385 CTTGCTCAAGAAGAGCCTG 59 574325 574343 CCTCTCCTACTCCTGTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psenen ENSRNOG00000020941 ENSRNOT00000028438 1 1 1 80 1 89016642 89017023 CGGAAGTACTATCTTGGTGGA 59 89016582 89016601 GAAGGCCTCTTTGAAGAACC 59 NA Rattus norvegicus 81 Olr777 ENSRNOG00000050428 ENSRNOT00000045645 1 1 1 60 3 103089739 103089758 CTTGTTGCTTCTCATCTCCT 58 103089698 103089718 ACCTGATGAATGTTTCCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 3 2 2 80 20 13620667 13620686 CTACCTAAAGCTGCTTCCCA 60 13618495 13620624 CATGCCACTTGATCTGGGA 60 NA Rattus norvegicus 81 Scgb3a1 ENSRNOG00000002718 ENSRNOT00000051916 3 1 1 60 10 35133581 35133599 CACCGCCATCTTTCTAGTG 58 35133623 35134267 GAAGAAAGCAACGCCAGAG 60 NA DesignRelaxed Rattus norvegicus 81 Lrcol1 ENSRNOG00000037466 ENSRNOT00000056712 3 1 1 88 12 52385716 52385734 TCAGGACTAGCAACAACCC 59 52385536 52385665 TACTTCTCCTTCAGGCTTGC 60 NA Rattus norvegicus 81 Lrrc46 ENSRNOG00000009902 ENSRNOT00000013542 2 1 1 80 10 84972568 84972587 ATGAGGAGGACAAATCCTCG 59 84972094 84972525 TGAAGAATCCTCGCTCTGC 60 NA Rattus norvegicus 81 AABR07041078.1 ENSRNOG00000000620 ENSRNOT00000045110 1 1 1 80 X 118747156 118747177 AGACCACATCATAACCTCTCAG 59 118747216 118748385 AAGTGGTCTAACTGAGAGGTC 59 NA Rattus norvegicus 81 Aak1 ENSRNOG00000018317 ENSRNOT00000043082 3 1 1 80 4 118788420 118788439 TGCTTTCTAACCCTACTGCT 59 118788480 118790205 CTTCTGCAGCTTTATGAGTGG 59 NA Rattus norvegicus 81 Stambpl1 ENSRNOG00000050224 ENSRNOT00000075598 2 1 1 80 1 252527987 252528005 GCGATCTCGCTAACTACTC 58 252528047 252528915 CCACTAAATTCTGAACAGCAC 58 NA Rattus norvegicus 81 Mroh2b ENSRNOG00000042327 ENSRNOT00000060376 1 1 1 80 2 54684370 54684391 ACATTCATTCACCTTCTTCACC 59 54684430 54685372 TGGAGAATAATGGCATCTGTG 58 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 3 2 2 81 7 143137696 143137715 TCAAGGCTCAGTACGATGAC 60 143137400 143137655 TTTATTTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135,ENSRNOT00000091273 2 2 2 80 3 153403192 153409422 AGATGTCAAGAAAGCGTGTG 59 153409464 153409483 GATTGGGCAGCATAGAAGAG 59 NA Rattus norvegicus 81 Fam83e ENSRNOG00000021039 ENSRNOT00000028564 1 1 1 80 1 101706499 101709144 TCCTACAGCTTCACATGGA 58 101709187 101709206 GAAGGCATCTGCAATTTCTC 58 NA Rattus norvegicus 81 Ptgr1 ENSRNOG00000015072 ENSRNOT00000020335 1 1 1 80 5 76115796 76118289 CTACTTTGATAATGTCGGTGGAG 59 76115738 76115757 CCACAGATGGCAATTCTTCC 59 NA Rattus norvegicus 81 Psmb3 ENSRNOG00000052730 ENSRNOT00000086608 3 1 1 81 10 85650772 85651106 TGTATGAGAAACGGTTTGGT 58 85651148 85651168 CAAATGAAGGGCTTAAAGGTC 58 NA Rattus norvegicus 81 Siglec8 ENSRNOG00000022640 ENSRNOT00000048947 2 1 1 80 1 99584731 99584750 AGTGTATACCTGCCAAGCTC 60 99583704 99584689 AAAGTTGCACTTCTCTGTGG 59 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 3 2 2 80 5 151198709 151198727 AAATCAGACGTGTGGTCCT 59 151198769 151198876 GTTGTTCATACCTGGGTATGG 59 NA Rattus norvegicus 81 Acyp2 ENSRNOG00000042419 ENSRNOT00000067998 2 1 1 82 14 115033027 115033046 GCTGGGTGAAGAATACAAGC 59 114891976 115032984 CCAGGACTTCATGGAATTGAC 59 NA Rattus norvegicus 81 Olr646 ENSRNOG00000049365 ENSRNOT00000074443 3 1 1 60 3 77018558 77018577 TGTAAGCCTCTGCACTACAC 60 77018600 77018618 CTCCTACCATCAAGCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa3 ENSRNOG00000005616 ENSRNOT00000007768 2 1 1 80 3 162785684 162786327 TGCGACAAATTATGGAATGGG 59 162786368 162786387 GATGACATCATTGCACTGGG 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 2 2 3 80 7 143493424 143493809 TGAAGAAGGATGTGGATGGAG 60 143493364 143493384 AGTTGATTTCATCAGTCAGGC 59 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000026489,ENSRNOT00000077952 2 2 2 80 1 81236142 81236160 TTAATCACGCTGTCCACTG 58 81236204 81238042 GTCAGTCATGAACAGCTGG 59 NA Rattus norvegicus 81 Sri ENSRNOG00000049780 ENSRNOT00000073790 1 1 1 84 4 23016165 23016183 AACTCAGTCTGGCATAGCG 60 23011931 23012797 CATATCTCTATCCAGCATTGAAACC 60 NA Rattus norvegicus 81 Zp4 ENSRNOG00000027506 ENSRNOT00000038938 2 1 1 80 17 65501880 65501898 GCGCTTCAGTATCTCTACC 58 65501942 65502240 CAGTGCAGGTATACCTGTC 57 NA Rattus norvegicus 81 Casp4 ENSRNOG00000033697 ENSRNOT00000061973 2 1 1 80 8 2641846 2647691 TACTCTACAACACCACACCA 58 2647732 2647752 GAAGCAGGAAATGAGTTTGGA 59 NA Rattus norvegicus 81 Otulin ENSRNOG00000012017 ENSRNOT00000016111 1 1 1 80 2 80273765 80278781 AGCTCATACTGTTACCGGA 58 80273703 80273722 TCCCATCAAATTTCAGTCCA 57 NA Rattus norvegicus 81 Aco1 ENSRNOG00000005849 ENSRNOT00000008337 3 1 1 80 5 56479273 56480450 TGAAGGTTCAGATAAAGCTGGA 60 56480491 56480509 AGTAAGTGAGCTCCACGTC 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483,ENSRNOT00000041365,ENSRNOT00000077167 3 3 4 80 12 5671543 5671766 ATAAGTGACAGCACAAATGGAG 59 5671484 5671503 GGTCAAGTCCACGTATTCCA 60 NA Rattus norvegicus 81 Zfp458 ENSRNOG00000017986 ENSRNOT00000032909 1 1 1 88 2 86975601 86975619 ATACCTTGGTCCTGCTCAG 59 86975671 86976140 TAGAGGAAGCAAGACCCAG 58 NA InUTR Rattus norvegicus 81 Clvs2 ENSRNOG00000012122 ENSRNOT00000016518 2 1 1 80 1 25174903 25174922 CAATCTGGACCACTATGGGA 59 25174962 25216066 ATATCCACCAGTGTATACCTGC 60 NA Rattus norvegicus 81 Slc43a2 ENSRNOG00000003835 ENSRNOT00000005100 2 1 1 80 10 63707426 63707446 ACGACTCATCTTCTACATGGG 59 63707487 63710680 TAGAGGGCAACTGTCTTCTG 59 NA Rattus norvegicus 81 Sepn1 ENSRNOG00000017078 ENSRNOT00000022921 1 1 1 80 5 152755127 152755147 ACCGGCCATATCATCTTATCC 60 152753554 152755086 ATTCAGAGACCTGTGGTTGG 60 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 2 2 2 80 8 6057030 6057049 TCAGAATCAAAGGCCAAGAG 58 6056214 6056990 CTGACGTAGATAATAGCTGCTC 58 NA Rattus norvegicus 81 Tmem203 ENSRNOG00000010894 ENSRNOT00000014454 1 1 1 60 3 2475317 2475335 CTGGTGGAACGTCTTTGTG 59 2475357 2475377 GGTGGTGAAGTAGGTACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 1 2 2 80 X 122590468 122591754 CAGATCCCATAAAGACAGCC 58 122591796 122591815 AGGGCATTCTGTATTGTCCA 59 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 3 2 2 80 15 18664542 18675304 GAATCTATTATTGGTACTGGCGG 59 18664484 18664506 AGTAACAGAACTGATAGTCCTCG 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000055427 3 1 2 80 10 85281508 85281527 CCTTCTCCTCTTCTTCCTCC 59 85280617 85281465 GGCTTCCAGAACTTAGGGA 59 NA Rattus norvegicus 81 Aif1l ENSRNOG00000009951 ENSRNOT00000013286 2 1 1 80 3 9243115 9243133 TGTCAGTGACACCATCTCC 59 9240512 9243072 ATCATGACCAGCTTGAGGAC 60 NA Rattus norvegicus 81 Cav3 ENSRNOG00000005798 ENSRNOT00000007601 1 1 1 94 4 144383179 144397818 GAGGACATTGTGAAGGTGGA 60 144397875 144397893 AAAGTGGTGTAGCTCACCC 60 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 2 2 2 60 14 107393319 107393337 CACCTTTGACAAACACGGA 59 107393358 107393379 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf40b ENSRNOG00000052539 ENSRNOT00000091306 1 1 1 80 7 140971921 140972250 AAGGAGAAGGAACAAGCCA 59 140972293 140972312 GACACTACTCATCCCATCCA 59 NA Rattus norvegicus 81 Zfp956 ENSRNOG00000026874 ENSRNOT00000059263 2 1 1 80 4 77632517 77632535 CAAGCAAGAGGAAGAGGTG 58 77632579 77633343 TTAGCCAGCCATGTTTCTG 58 NA Rattus norvegicus 81 Cdk8 ENSRNOG00000039819 ENSRNOT00000061105 2 1 1 81 12 10497446 10499008 GACTATCAGCGTTCCAATCC 59 10497384 10497402 AGTATCCCATGCTGCTCTG 59 NA Rattus norvegicus 81 Tyro3 ENSRNOG00000058586 ENSRNOT00000081462 1 1 1 80 3 111607874 111607892 GAAGGAGAAGCTGGAGGAC 60 111607935 111608348 GATCCAAACTCTCCTTTGCC 59 NA Rattus norvegicus 81 Tyro3 ENSRNOG00000058586 ENSRNOT00000081462 2 1 1 80 3 111610996 111611019 CTGAGATTTACAACTACCTCATCG 59 111611054 111614707 ACATGAGATCATACACTTCCTCC 60 NA Rattus norvegicus 81 LOC498316 ENSRNOG00000048659 ENSRNOT00000073985 1 1 1 131 13 109646499 109648747 GGTGTTACTAAAGGACCGC 58 109648842 109648860 TCTCGTTCAGCTCTTCCAG 59 NA InUTR Rattus norvegicus 81 Olr184 ENSRNOG00000017341 ENSRNOT00000023279 2 1 1 60 1 169903584 169903606 CCTTTCTCAGATGTTCTTCATCC 59 169903546 169903567 GACCAACAATGTAATGCTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frem3 ENSRNOG00000039152 ENSRNOT00000059896 3 1 1 80 19 31024650 31024668 CATCCTGAACAAGGACCAC 58 31010814 31024606 CTTAACTGGCTTCCTCCAC 58 NA Rattus norvegicus 81 Tuba1b ENSRNOG00000053468 ENSRNOT00000081355 3 1 1 81 7 140616384 140616402 TCTTCAGTGAGACAGGAGC 59 140616190 140616342 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Epha4 ENSRNOG00000013213 ENSRNOT00000041689 3 1 1 80 9 83121259 83121280 AACATGTTGGACAAACTCATCC 60 83118790 83121218 CAAGGCTGTGTTTGGTCTG 59 NA Rattus norvegicus 81 Txn1 ENSRNOG00000012081 ENSRNOT00000016447 1 1 1 80 5 75057679 75057697 ACAAGCTTGTGGTAGTGGA 59 75056754 75057637 CACAGAGGGAATGAAAGAAGG 59 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 1 3 3 80 8 100043153 100043752 AAATATAGTCGAGCAGCCCT 59 100043793 100043813 TCTTCTACCAACTCGTCACAG 60 NA Rattus norvegicus 81 LOC100911794 ENSRNOG00000020133 ENSRNOT00000027335 2 1 1 81 1 220429402 220429420 ATCTCTTTGGAGGGCTCAG 59 220429463 220429593 GAAGAATGTCCCTGGTATGAC 58 NA Rattus norvegicus 81 Foxk1 ENSRNOG00000001104 ENSRNOT00000001466 1 1 1 81 12 14190941 14190959 ACTAAGTGGCATCTACGCC 60 14189348 14190896 TCGGATAGAGTTCTGCCAG 59 NA Rattus norvegicus 81 Rars ENSRNOG00000007739 ENSRNOT00000010252 3 1 1 80 10 20652142 20652160 CGTAACACCAAGTCAGCAG 59 20650944 20652098 TTTGCCTTGAGCATCTGAG 58 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927,ENSRNOT00000074740,ENSRNOT00000070907 1 3 3 80 4 183353987 183355034 AAGTTTGAGTGTTGAAGACCAG 59 183353928 183353947 ACCACTGCTTTCTCACTACC 60 NA Rattus norvegicus 81 Gpr33 ENSRNOG00000038990 ENSRNOT00000009040 3 1 1 80 6 72805602 72805621 TTCCACATTGATTCTGCCCT 60 72805465 72805561 GTGATAACGGTCAACATTCCG 60 NA Rattus norvegicus 81 RGD1560455 ENSRNOG00000037838 ENSRNOT00000049779 1 1 1 80 X 78259571 78281489 TTCAGTGAGAAATCACGATGC 59 78281528 78281549 CTGTTTGTTCTGTTACTTCCCA 59 NA InUTR Rattus norvegicus 81 Sh3rf3 ENSRNOG00000046791 ENSRNOT00000072485 3 1 1 84 20 28652351 28662875 CCTCAACATGTACCTGGCT 59 28662923 28662941 TACACGGTACATCTCACCC 59 NA Rattus norvegicus 81 Gla ENSRNOG00000011513 ENSRNOT00000015494 3 1 1 81 X 105412728 105417133 CCTGCATAAGTGAGCAACTG 59 105412666 105412684 AGGTATTCATAACCCGCGT 59 NA Rattus norvegicus 81 Taar1 ENSRNOG00000016073 ENSRNOT00000021510 2 1 1 60 1 22596125 22596143 CCACCTAGCCTTCATTTCC 58 22596083 22596104 TTTGTATCTTAAAGGGTCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g2e ENSRNOG00000017024 ENSRNOT00000022847 3 1 1 92 5 157330954 157332456 TCTTCTGTGCTGGTAGAACG 60 157332510 157332529 TATAAGTGCCCAGGTTGTGG 60 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 1 2 2 111 6 109097472 109103608 AAGTACACTCAGGCTGAGG 59 109097379 109097397 TAAAGCGGACCTTGGAGAC 59 NA Rattus norvegicus 81 LOC100912408 ENSRNOG00000047813 ENSRNOT00000075693 2 1 1 60 1 173128164 173128184 GAATCCACTAATCTACAGCCT 57 173128124 173128144 CCATAATTTCAACACAGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310647 ENSRNOG00000045919 ENSRNOT00000051570 1 1 1 92 17 57814843 57815626 AGGACCAGATTTCCATAAAGGA 59 57814772 57814790 AGCCAATCTCATGGTCTCC 59 NA Rattus norvegicus 81 Smyd2 ENSRNOG00000003583 ENSRNOT00000004783 2 1 1 80 13 108683133 108684484 ATCATCAAACCCTACAGTAAGC 58 108684523 108684543 GTACAGTCTTCCCAACTTCAG 58 NA Rattus norvegicus 81 LOC100362814 ENSRNOG00000011132 ENSRNOT00000015073 3 1 1 80 3 94156023 94156041 CTGTTCATGATGTCCCAGC 59 94152686 94155979 CTTCACCATCTGCACAGTG 59 NA Rattus norvegicus 81 Kbtbd2 ENSRNOG00000013809 ENSRNOT00000018442 1 1 1 80 4 87091457 87092809 TCCTACAGGTAGAAGATGTGC 59 87091397 87091415 ACAGCCGTACACAGTTCTC 60 NA Rattus norvegicus 81 Mgme1 ENSRNOG00000028196 ENSRNOT00000038865 3 1 1 61 3 138405226 138405244 GTGCTGTGAACCATGATGC 60 138405617 138405636 GGCCACCACAATTAATCCAC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1561748 ENSRNOG00000028214 ENSRNOT00000030164 1 1 1 80 7 17859329 17859348 AGCAAGTGGAAGAAACATGG 59 17853389 17859288 GATACATAGACCATGGCAGGA 59 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207,ENSRNOT00000086391 2 2 2 80 9 70432412 70432433 TCCTTACTGATTTGGAAGACCT 59 70432069 70432376 CAAGTTTCTCCTGAATCAGATCAC 60 NA Rattus norvegicus 81 Oaz2 ENSRNOG00000015953 ENSRNOT00000021372 2 1 1 81 8 71227460 71228317 GGAGCAAAGAAGGATTATTAGC 57 71228358 71228377 TTCCTGAAGCAGATGAAGAC 58 NA Rattus norvegicus 81 Tbrg4 ENSRNOG00000052477 ENSRNOT00000089133 2 1 1 81 14 86881742 86881760 TACCACCTGGTACAGAAGC 59 86881433 86881699 GGAAACTGAGCTTACCATAGG 58 NA Rattus norvegicus 81 Dynlt1 ENSRNOG00000018207 ENSRNOT00000024656 1 1 1 81 1 47208268 47211469 GTAAAGGAGGCTATAGAAAGTGC 59 47208209 47208230 CTACAACATTAGTGGTCCACTG 59 NA Rattus norvegicus 81 Dynlt1 ENSRNOG00000018207 ENSRNOT00000024656 2 1 1 81 1 47208268 47211468 TAAAGGAGGCTATAGAAAGTGC 58 47208208 47208228 TCTACAACATTAGTGGTCCAC 58 NA Rattus norvegicus 81 Ell3 ENSRNOG00000022868 ENSRNOT00000036823 1 1 1 80 3 113402716 113402833 CAGATTATCTCCTGCAATACAGC 60 113402658 113402678 CATAGTCGGTCTCAAAGTCCT 59 NA Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000089242,ENSRNOT00000063900 1 2 2 80 6 108145861 108146044 GAGAAATGAAAGAAAGTAGGGAGG 59 108146083 108146101 TGGAGTCTGATACTGGCAC 59 NA Rattus norvegicus 81 Zfp609 ENSRNOG00000015977 ENSRNOT00000021554 3 1 1 80 8 71236807 71240294 CTACCCAGGTTCCTATCTGC 59 71236746 71236764 TTGTCAGCATCCTCTCCAC 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000046388,ENSRNOT00000086036 1 3 3 80 10 65588101 65588122 TACCAGAAAGATGACAATGGTG 59 65588163 65588277 CTTGTCAACCTTGATGCCT 58 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000030243 ENSRNOT00000044209 1 1 1 80 3 26025772 26049599 GTGACATCCTGTGAATTTCCA 59 26025712 26025733 CCATTTGTTGCTGATACATCTC 58 NA Rattus norvegicus 81 M6pr ENSRNOG00000014992 ENSRNOT00000020364 1 1 1 80 X 88315129 88315148 GAGATGGATAGCAGCCTAGC 60 88314338 88315089 TGATGCAAATATGACAAGGAGG 59 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 2 2 2 81 1 196858969 196858987 GGAGCAGTTTATCCGAGAG 57 196858190 196858924 GCTTTGACCCTGGATAAGG 58 NA Rattus norvegicus 81 LOC100912616 ENSRNOG00000002497 ENSRNOT00000003376 1 1 1 66 10 70999824 70999845 GGGAATGAACATAACCTATGCT 58 71000489 71000507 TTTGGGACACATTCCAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Riiad1 ENSRNOG00000037310 ENSRNOT00000056449 1 1 1 80 2 195711837 195712385 ATTTCAAGATCCAGACTCGG 57 195711776 195711795 AGAAGCTGCTAATGAGAAGG 57 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 3 3 3 100 12 17743243 17743262 CTTGGAGACAAACCTGAGAG 58 17743324 17745689 TGGCTTCCTCAATACTTCTC 57 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076431,ENSRNOT00000035113 2 2 4 80 13 79029219 79029239 GCGTCTTTAGCTTACTGTTGG 60 79029278 79031154 AGAATATACACATATGTGGCGC 59 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076249,ENSRNOT00000035113 2 2 4 122 13 79046171 79048925 GCTATTAGAGAACTAGGCCTC 57 79049009 79049027 TGACCAAAGAAAGGTGAGG 57 NA Rattus norvegicus 81 RGD1310769 ENSRNOG00000008781 ENSRNOT00000012327 3 1 1 80 6 109684161 109684181 CTCGGAGTTGTTTGTATTTGG 58 109683995 109684121 AGGATTGAGAAACTTGCTACC 58 NA Rattus norvegicus 81 Dennd6a ENSRNOG00000011636 ENSRNOT00000016233 3 1 1 80 16 2314911 2314930 GCCCAAAGTGTTATTCTCCG 59 2314968 2322126 GCTAGCCACATATCTTTCTAATGG 60 NA Rattus norvegicus 81 Hdac1l ENSRNOG00000009568 ENSRNOT00000012854 3 1 1 80 5 147731784 147731803 ACTACATCAAGTTCTTGCGT 58 147725998 147731741 CACCCACGTTGAATCTCTG 59 NA Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000073770 3 1 2 92 1 227454475 227457484 TCTTAGGGTTCATTAACTCTGGG 60 227452375 227452394 GTAAATTCATCGCCTGGCTC 60 NA Rattus norvegicus 81 Klhdc2 ENSRNOG00000004474 ENSRNOT00000006223 3 1 1 80 6 91595967 91598993 GGCTACAAGAGTAATCAAGTGAG 59 91599028 91599051 AGTCTCCATATTGTAGATCCACAG 60 NA Rattus norvegicus 81 Rpl26-ps2 ENSRNOG00000039783 ENSRNOT00000061041 2 1 1 60 1 31527940 31527959 ATAATGTTCGGTCTATGCCC 58 31527899 31527917 TAGTGTCCTCGAACAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 1 2 2 80 1 31979803 31980075 TTTGTTCTGATTGATGAGGTGG 59 31980115 31980134 GATAGCATCTGATGGCTCTG 58 NA Rattus norvegicus 81 Hlx ENSRNOG00000002309 ENSRNOT00000003155 3 1 1 90 13 102642524 102642545 CCTCAAATTTGGTATTGACCGA 59 102641755 102642474 TAGCAGCGATGTGAGATCTC 60 NA Rattus norvegicus 81 Olr614 ENSRNOG00000049509 ENSRNOT00000043599 1 1 1 60 3 76368368 76368389 GAATCATCAATCACTTTGGCTG 58 76368329 76368349 GGGTCAGAACAGGATACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx21 ENSRNOG00000009427 ENSRNOT00000012538 2 1 1 80 10 85036796 85048707 CAAGGACGGAGAATGTTCC 58 85036734 85036755 ATCCACAAACATCCTGTAATGG 59 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423,ENSRNOT00000089292 1 2 2 80 4 31565927 31565946 GAAGGCTCTAGAAAGAACCC 58 31565988 31566576 CCAGTAGTAATCGCTCTTCC 58 NA Rattus norvegicus 81 Atp13a1 ENSRNOG00000010776 ENSRNOT00000015247 2 1 1 80 16 21364632 21364731 CATCAACTACAAGGGCCCA 60 21364570 21364588 ATCAGTGACACTGCCAGAC 60 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 3 3 3 84 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509310 49509329 TCTTCTTTGACCAGATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395,ENSRNOT00000080406 3 2 4 86 20 3122036 3122410 GAACAAGGGAGGAGACAGAG 60 3122543 3122561 GGTCAGGAACTTTCCTTGC 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 2 2 2 75 12 2581133 2581152 TAAGGAACCTGTGGTCAGAG 59 2581190 2581292 AACTCTTCGTGTTCCAGAG 57 NA DesignNoJunction Rattus norvegicus 81 Kin ENSRNOG00000026690 ENSRNOT00000039689 1 1 1 80 17 72201490 72201593 GACGCTTTGGCACTAAGAG 59 72201428 72201446 CGTTCATGTGGATGTGCTC 59 NA Rattus norvegicus 81 Kin ENSRNOG00000026690 ENSRNOT00000039689 3 1 1 80 17 72209120 72209141 AATTAAGTCTAAAGGGCTGCAG 59 72206373 72209079 TTGAAACCATTCTCGTCGC 59 NA Rattus norvegicus 81 Tmem62 ENSRNOG00000023874 ENSRNOT00000030065 2 1 1 80 3 112920903 112925900 ACTATTACAGGAAGTACTCCGC 60 112925941 112925959 AGGAGTAGTTGCCGAAAGG 59 NA Rattus norvegicus 81 Vom1r81 ENSRNOG00000048807 ENSRNOT00000044913 3 1 1 60 4 88048725 88048743 AACCAACCAGATGAAGGTC 57 88048765 88048785 CCTGATGATGTAGTTCTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zkscan1 ENSRNOG00000001335 ENSRNOT00000045379 3 1 1 107 12 19242211 19242229 CCTCATCCTGGAGGAATGG 59 19242300 19245244 CTGTTCTCAGAACCCTGGG 60 NA Rattus norvegicus 81 Ncbp2 ENSRNOG00000001746 ENSRNOT00000002381 2 1 1 80 11 72075651 72075671 GAAGATCATCATGGGTCTGGA 59 72073875 72075614 GCATCTGCTCTTGAATAGTATTCC 60 NA Rattus norvegicus 81 Etaa1l1 ENSRNOG00000006185 ENSRNOT00000008135 2 1 1 60 14 102292388 102292408 GAAATGCTTGAACTCTTTCCC 58 102292348 102292366 TACAAACTGCCTTCTGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 3 2 2 81 6 110646940 110646960 TTAGGTCTTGGGATGACAGTG 60 110646199 110646898 CCAACCTGTGATCACTTCTG 59 NA Rattus norvegicus 81 Ftsj2 ENSRNOG00000043267 ENSRNOT00000042366 1 1 1 119 12 16399440 16399458 GAAGCATCACATCCTGAGG 58 16399541 16402477 ATGGGAGAGCTGGAATCTG 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 3 3 3 80 17 66447368 66447389 TCACTTGTCTCCTTATTTCCTC 58 66447428 66449232 TAAAGATGGATGTGGAACCTG 58 NA Rattus norvegicus 81 AC139950.1 ENSRNOG00000056011 ENSRNOT00000083110 2 1 1 60 6 78179981 78180000 ACATGCATCTCAGATTCAGG 58 78180020 78180041 TGGCTCTGCATATAAATTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Szrd1 ENSRNOG00000009183 ENSRNOT00000045226 1 1 1 98 5 159643874 159645428 AAAGGAGAGCAGGAAATCCA 59 159643795 159643813 TTGAGGATGCGGATCTGTG 60 NA Rattus norvegicus 81 Mrpl49 ENSRNOG00000020975 ENSRNOT00000028475 2 1 1 81 1 221417627 221417648 CCTGTCTATAAGGAGATCACAC 58 221417473 221417585 TCTGTAGAGCCCAGATGTC 58 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000022466 ENSRNOT00000038096 2 1 1 80 4 123112422 123112441 CATGAAACTCCTAGCAGTGC 59 123109955 123112380 ATTAGGCAGTATCAACCCGT 59 NA Rattus norvegicus 81 Hagh ENSRNOG00000014743 ENSRNOT00000020192 3 1 1 81 10 14218979 14219001 CATGTACCTGATCATTGATGAGG 59 14219037 14219724 CACAGTTTCTATAACCTTCTGTGG 60 NA Rattus norvegicus 81 RGD1560556 ENSRNOG00000022791 ENSRNOT00000032743 2 1 1 80 6 78590412 78590430 AGACCAGACCATCAAGGAG 58 78590472 78625339 TCCATCATCGAAATGTCTTCC 58 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 3 1 1 61 1 255801696 255801714 GGCCAAGATTAAGGCTTGG 59 255801738 255801864 GTCGTTTCAATAGCTCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Nudt16l1 ENSRNOG00000003224 ENSRNOT00000004314 2 1 1 97 10 10831530 10831631 CGTTTCTCAGTACTGATGCAG 59 10831453 10831471 TTCAAGCCATCCTCCAGTG 60 NA Rattus norvegicus 81 Tfpi2 ENSRNOG00000010513 ENSRNOT00000013989 2 1 1 80 4 28952677 28952695 CTGAGACTGTGGAATCTGC 58 28952393 28952634 TAAGTTATTCCCTTGGGCAG 57 NA Rattus norvegicus 81 Nnmt ENSRNOG00000005930 ENSRNOT00000007789 3 1 1 95 8 52937681 52937700 TATTACAGCTTTGGGTCCAG 57 52936048 52937623 CTTTACACCATCCAGGCAG 58 NA Rattus norvegicus 81 Olr775 ENSRNOG00000045988 ENSRNOT00000052294 2 1 1 60 3 103043339 103043359 AACCACTCCACTATTTCACCA 59 103043299 103043317 GAAACCAACACCAACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599,ENSRNOT00000085031,ENSRNOT00000089972,ENSRNOT00000082402 3 4 4 81 6 109658473 109658494 GATGCTTCGTACTTAAGTTCCA 59 109658533 109667442 CATTCAGACCATAGGTGATGAC 59 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 1 2 2 80 1 162871797 162871817 CCTTAACAGATGTGGTGACAG 59 162871857 162875025 CCAAAGCTTGTAGACACTCTC 59 NA Rattus norvegicus 81 Tm4sf19 ENSRNOG00000001757 ENSRNOT00000002396 1 1 1 158 11 71611979 71611997 ATGGGACCTACCTGATGAG 58 71608201 71611079 ATAGACCAACGAACACCTG 57 NA Rattus norvegicus 81 Tm4sf19 ENSRNOG00000001757 ENSRNOT00000002396 2 1 1 159 11 71611979 71611997 ATGGGACCTACCTGATGAG 58 71608200 71611079 AATAGACCAACGAACACCTG 58 NA Rattus norvegicus 81 RGD1562558 ENSRNOG00000029613 ENSRNOT00000043588 3 1 1 60 15 27408211 27408231 TTTATTCAGAAGTGTGCCCAG 59 27408171 27408189 GTCCAGTCTTATGCTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl11 ENSRNOG00000022298 ENSRNOT00000031667 3 1 1 81 14 17197008 17197121 AGTTGAAGTGATTGTTACCCTG 59 17197163 17197181 CATTATGAGGCGAGCTTGC 60 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 3 2 2 87 9 17227410 17227430 CCTTCACACGAGTATGAACAC 59 17227479 17231875 CCTTGATTTGGACCACCAC 59 NA Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000047169 ENSRNOT00000075173 2 1 1 60 1 259665523 259665541 CTCGAGCAATTAGGTTGGG 58 259665481 259665502 CCTAGAATAACCCGATGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cul4b ENSRNOG00000002585 ENSRNOT00000065023 1 1 1 80 X 124861102 124867946 GAAGATAACAGTTCAGAAACCTCC 60 124861045 124861063 AAGAGGTGGATAGGGAGGA 59 NA Rattus norvegicus 81 Cul4b ENSRNOG00000002585 ENSRNOT00000065023 3 1 1 80 X 124846279 124846298 TCAATGCCATGAAAGAAGCA 59 124845201 124846241 CCACATACTTAGCTATCAGTTCAG 59 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 3 2 2 80 16 21070984 21071003 AGAATTCATGGATTGGCCTG 58 21071045 21073376 TCTCATATTGCAGTCCTGTG 57 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800,ENSRNOT00000028406 1 2 2 80 1 221311457 221311475 GTACCCAGAACCACTCACC 60 221310892 221311416 ATCTTACAGGTCAGAACTTCCC 60 NA Rattus norvegicus 81 LOC100909692 ENSRNOG00000046043 ENSRNOT00000072524 1 1 1 60 3 103485107 103485126 ACATTCCTCAAGTGGTTCCT 59 103485066 103485085 CACAACAGAGATGTGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 2 2 2 80 7 143692857 143692970 TATGACCGAGGCTATGACTC 59 143693013 143693031 TCTGTAGTCGTCATCCCTC 58 NA Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000063807 1 1 2 80 15 24090880 24090902 CTGAATAATCCTTACCAAGTGCC 60 24090942 24101146 CTACTTCAGCAAAGCGTGG 59 NA Rattus norvegicus 81 Eif3j ENSRNOG00000016459 ENSRNOT00000022437 1 1 1 102 3 113976922 113976940 GTTCTCTATGGAGGACCCG 59 113977005 113989404 CCAGTTATCCTTCACGTCCT 59 NA Rattus norvegicus 81 RGD1563222 ENSRNOG00000010963 ENSRNOT00000014767 2 1 1 80 3 94036398 94036418 AGCTAGAGATCCGGATTAAGG 59 94036459 94037646 TCAGGAATTTATAGCGCTGG 58 NA Rattus norvegicus 81 Mettl15 ENSRNOG00000004926 ENSRNOT00000006670 3 1 1 81 3 100222458 100277882 TTCAGAAATGTACCCGACAC 58 100222396 100222415 CACTCCAGCTTTCATTAGCA 58 NA Rattus norvegicus 81 LOC100363427 ENSRNOG00000047502 ENSRNOT00000073793 1 1 1 60 15 19052777 19052798 GACAATGATCTCTATGGTTGGG 59 19052738 19052761 CTTCATAAAGTGTATCTGGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC239701.1 ENSRNOG00000060437 ENSRNOT00000088616 3 1 1 60 Y 67340 67358 ACAGCCATTTCCAAAGCAG 59 67298 67319 TGTAGGAGATGAAGTAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cda ENSRNOG00000049700 ENSRNOT00000075128 1 1 1 90 5 156768242 156781151 GAGGATCTTCTCTGGGTGC 60 156768170 156768188 TTCAGAGATGGCCTTCTGG 59 NA Rattus norvegicus 81 Cda ENSRNOG00000049700 ENSRNOT00000075128 2 1 1 91 5 156768243 156781152 GGAGGATCTTCTCTGGGTG 59 156768170 156768188 TTCAGAGATGGCCTTCTGG 59 NA Rattus norvegicus 81 Ptger2 ENSRNOG00000050968 ENSRNOT00000075209 2 1 1 91 15 19339132 19339150 CTTCTATGGCGGAGGAGAC 59 19339204 19349300 AGCAAAGATTGTGAAAGGCA 59 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000089279 1 1 2 60 7 143597036 143597054 ACATAGCCGAGTAGTGACC 59 143596994 143597012 CACAGATGGAGAGGTTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 3 2 2 80 8 52808666 52808687 GATTATCAAACAGCCGGATGAG 60 52807983 52808626 TTGGTAAGACCAGACTTCCC 59 NA Rattus norvegicus 81 Hoxb4 ENSRNOG00000008191 ENSRNOT00000010965 1 1 1 60 10 84167561 84167583 GATCAACTCAAACTATGTCGACC 60 84167602 84167621 ATCGCTCTGTGAATACTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912292 ENSRNOG00000043300 ENSRNOT00000066977 3 1 1 210 5 58018833 58019697 CTCAACTCAGGCTCAGGAC 60 58018641 58018659 GACTATGGCAATGAGAGCC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 3 3 3 81 20 3149177 3149685 GAAGAAGGCAGGTGAAAGAG 59 3149851 3149870 CCACAACAATCCTGCAAGAG 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000064873 2 1 2 86 7 118490615 118490633 GTCTGGATTCCGGTCAGAG 60 118490681 118492884 TAAAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Fbxl15 ENSRNOG00000019509 ENSRNOT00000026471 1 1 1 209 1 266077162 266077180 CAACTCGAGCACCTAGACC 60 266077817 266077835 CATGTCCTGGAGTAGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Tppp3 ENSRNOG00000016890 ENSRNOT00000022863 3 1 1 88 19 37425125 37425259 TCTTCTCCAAAGTCAAGGCA 59 37425056 37425074 GAACCTCTTTGTTGCCAGC 60 NA Rattus norvegicus 81 Ankrd24 ENSRNOG00000006759 ENSRNOT00000008882 3 1 1 82 7 10922236 10922255 ATAGTGGCTTCCCTACAGGA 60 10922073 10922191 TCCTCAAGGATCTGGACCT 59 NA Rattus norvegicus 81 Vopp1 ENSRNOG00000006646 ENSRNOT00000008885 1 1 1 87 4 88441267 88469740 CTAATGGAGTGCACAGAGG 58 88483667 88483685 AGTCTTCATAGGAACGGCA 58 NA Rattus norvegicus 81 Tmem185b ENSRNOG00000047257 ENSRNOT00000072632 3 1 1 60 13 35555372 35555390 GACAGGTCTTTGGAACTGG 58 35555412 35555432 CGATGAAGATAAACTGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlg5 ENSRNOG00000005783 ENSRNOT00000007828 1 1 1 80 15 214977 215906 CTGATTCTTGAGTATGGCAACC 60 215944 215965 ATCCTTAGGCTTCATCATCTCC 60 NA Rattus norvegicus 81 Gpr39 ENSRNOG00000021586 ENSRNOT00000038811 2 1 1 60 13 42009527 42009545 CTGTTTACCTGGTGGTCCT 59 42009568 42009587 AGCACTTTCATCATGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 3 2 2 80 13 99246577 99246596 CATCCTCTATACCTTCCGCA 59 99246638 99247895 TATTCAAAGGCCTGGTTCTG 58 NA Rattus norvegicus 81 Rhox12 ENSRNOG00000040033 ENSRNOT00000061546 1 1 1 80 X 124252016 124252035 AAGTACCCGGATGTGATCAC 60 124247259 124251423 CTTAAACCATCTCTTCACTCTGG 59 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000019206 ENSRNOT00000025988 3 1 1 112 1 194768973 194769332 ATCTTATGTCGTCGGTGGAG 59 194768880 194768898 TCTGGAACTTGGTCAGCAG 60 NA Rattus norvegicus 81 Olr154 ENSRNOG00000059092 ENSRNOT00000087952 1 1 1 60 1 169576055 169576076 AGACCACTTCACTATACATCCA 59 169576097 169576115 ATGCCAGACCAATCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 2 3 3 80 11 67635525 67635545 AGGAACACTGACTTGAAGAGG 60 67635586 67637690 TCTGTAAGACTGGGTTGGAG 59 NA Rattus norvegicus 81 Sry ENSRNOG00000051574 ENSRNOT00000084732 1 1 1 60 Y 327502 327523 CACTATCATATACGGACAGGAC 58 327544 327562 TTTCTGGTTCTTGGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 3 6 7 89 X 70645330 70646351 CTTTACAGCCATTGTACAGGG 59 70646401 70646420 CAAATGTAGTGCCCAGACTG 59 NA Rattus norvegicus 81 Atp1b4 ENSRNOG00000007059 ENSRNOT00000009329 3 1 1 80 X 124640796 124640816 ACTTCAACGTTTCTGAACCTG 59 124640856 124645151 GACTGTCATTATAGCCCTGGA 59 NA Rattus norvegicus 81 AABR07070892.1 ENSRNOG00000000896 ENSRNOT00000001195 3 1 1 92 8 90304378 90304398 CTTACAAGAAACCAGCTTCAC 58 90304487 90304506 TTAATTTGCTCTGCAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Mmp11 ENSRNOG00000028344 ENSRNOT00000031400 3 1 1 82 20 13674820 13674930 ATTGACTTCACCAGGTACTGG 60 13674974 13674992 TTAGGGAAGAAGGCATGGG 59 NA Rattus norvegicus 81 Prdx5 ENSRNOG00000021125 ENSRNOT00000028687 1 1 1 89 1 222165403 222165757 CTGTTCCAAGACCCATCTG 58 222165332 222165350 TTAACACTCAGACAGGCCA 59 NA Rattus norvegicus 81 Susd4 ENSRNOG00000003562 ENSRNOT00000052407 2 1 1 80 13 101305496 101305514 CCCTGACACGATTTCAAGC 59 101305557 101306595 ATGAGTGGGATCTCATCTGC 59 NA Rattus norvegicus 81 Tmem238 ENSRNOG00000017306 ENSRNOT00000023246 3 1 1 66 1 72624906 72624924 GACCTGCTCATCTACTCCG 59 72624954 72624972 TGTACCAGAGAATCCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021239.1 ENSRNOG00000025794 ENSRNOT00000033201 3 1 1 60 13 62524456 62524480 CACAAAGATACGAATCTCTTAAGGG 60 62524420 62524439 GCAAAGCTCATGTTCCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mef2b ENSRNOG00000020400 ENSRNOT00000027661 2 1 1 80 16 21003422 21003440 TGCTGCTCAAATACACCGA 60 21003112 21003378 CCCTCCTCTTCAGTGTCTG 59 NA Rattus norvegicus 81 Ccdc104 ENSRNOG00000003901 ENSRNOT00000005306 2 1 1 80 14 113620216 113622600 CCGTCCTCAGAAGTTAAAGTG 59 113620156 113620174 AGTTTCAGGCAACAACTCC 58 NA Rattus norvegicus 81 Nfe2l1 ENSRNOG00000008830 ENSRNOT00000067542 1 1 1 80 10 84689839 84690546 CATGGAAATGCAGGCTATGG 60 84689778 84689796 GTGGTAAGAGGGTCTCCAG 59 NA Rattus norvegicus 81 Parp2 ENSRNOG00000008892 ENSRNOT00000011840 3 1 1 80 15 27748007 27748176 GACCTTCCTAACAGGATGCT 59 27748219 27748237 GACTCTAAGTCCGTGGCTC 60 NA Rattus norvegicus 81 Scfd1 ENSRNOG00000031203 ENSRNOT00000040548 3 1 1 80 6 72162077 72163553 AACATAAAGGAAGTCCATTCCC 59 72163593 72163612 CCTCATCTTCTTGTGCTCTG 58 NA Rattus norvegicus 81 LOC102557302 ENSRNOG00000047845 ENSRNOT00000040545 2 1 1 93 19 29133721 29134758 GAATGTTCAACGCTGGGAG 59 29133646 29133666 AGCTCTTTAATCAGCCTCTCC 60 NA Rattus norvegicus 81 Fam178b ENSRNOG00000023941 ENSRNOT00000037570 3 1 1 80 9 43207066 43207084 TTCCTGAGCAACCTCTACC 59 43204576 43207023 AGGCCATGTTAACAACTGGA 60 NA Rattus norvegicus 81 Dner ENSRNOG00000016640 ENSRNOT00000022564 2 1 1 80 9 91993803 91993821 GAATGGAGGTACCTGTGAC 57 91984729 91993759 ATGTCACACTCTTCACCTG 57 NA Rattus norvegicus 81 Tmem229b ENSRNOG00000010646 ENSRNOT00000014132 1 1 1 80 6 102155475 102166220 AGACTGTGACAACAGGAGG 59 102155413 102155431 ATATAGGTACCAGCGGGAC 58 NA InUTR Rattus norvegicus 81 Vom2r49 ENSRNOG00000050003 ENSRNOT00000049498 1 1 1 80 6 56767201 56773916 TACAATGTCCCACAGATCAG 57 56767140 56767159 AAACTGGTAAGGAGACTGGA 58 NA Rattus norvegicus 81 Vom2r49 ENSRNOG00000050003 ENSRNOT00000049498 3 1 1 80 6 56767201 56773917 CTACAATGTCCCACAGATCAG 58 56767141 56767160 AACTGGTAAGGAGACTGGAG 59 NA Rattus norvegicus 81 LOC100363509 ENSRNOG00000006924 ENSRNOT00000009061 3 1 1 60 5 137371934 137371953 GCAGCATCTTTAGCATCTCG 60 137371893 137371911 CTGGAGGTGGTCTCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak2 ENSRNOG00000000122 ENSRNOT00000000134 3 1 1 83 5 147195228 147195247 AATTTGGAGACTCCTTCCTG 57 147195293 147195404 GTCATCAAGCATTTCAGCC 57 NA Rattus norvegicus 81 RGD1561415 ENSRNOG00000017867 ENSRNOT00000024125 2 1 1 80 19 37675377 37675633 GCAGAGATCCCTGAGTGTC 60 37675677 37675695 CCTGTCTTCACCTGGAGTG 60 NA Rattus norvegicus 81 Slc39a14 ENSRNOG00000009832 ENSRNOT00000013067 1 1 1 80 15 51987528 51987547 AGTCACTTCTCTGCAAACTG 58 51986139 51987485 CTCAGGGAACATATCGGCT 59 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152,ENSRNOT00000015325 1 2 2 80 4 81238264 81238283 CTACGGTCCAATGAAGAGTG 58 81237542 81238221 CCAGGACCATAGTTCCCTC 59 NA Rattus norvegicus 81 Olr527 ENSRNOG00000050009 ENSRNOT00000043964 2 1 1 60 3 74448182 74448200 TCTCTGTGCTGTTTCTCCT 58 74448140 74448159 AGTATCATGCCTGTGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata3 ENSRNOG00000017540 ENSRNOT00000023581 3 1 1 171 9 93030903 93034129 CAAACGGATGATCGGAGAC 58 93034264 93034282 TGCGGTGAAATGGAATTCC 59 NA InUTR Rattus norvegicus 81 RGD1566073 ENSRNOG00000028320 ENSRNOT00000034681 1 1 1 129 19 30588245 30588794 TGAGTGTACAAGCAGAGGC 60 30588134 30588152 ATCTTCTTCCCGAGCTTGG 60 NA Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 3 1 1 63 7 123283119 123284470 GAAAGGAGCCAATGAAGCC 59 123283074 123283093 TGCCATCACAATGAACTCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1564319 ENSRNOG00000038050 ENSRNOT00000057901 1 1 1 60 3 65672238 65672257 AACTTAGCATTTGTGAAGCC 57 65672274 65672298 CCATCTGTATAAGATAGTTCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072400.1 ENSRNOG00000033214 ENSRNOT00000041866 3 1 1 60 14 43694400 43694419 CTTGCCGTTCTTAATGAGGT 58 43694359 43694377 CAAACAGCCAAATTCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688613 ENSRNOG00000043197 ENSRNOT00000064487 2 1 1 68 7 123482572 123482590 ATGACAGATGCAGAGAACC 57 123489568 123489586 AAACCAGTCCAGAAAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Sugp1 ENSRNOG00000052111 ENSRNOT00000078005 1 1 1 80 16 21103410 21107394 CACCTCTTTCAGTTCAAGATCTC 59 21103352 21103370 ACAACTCTGTGACACCCAC 60 NA Rattus norvegicus 81 Nubpl ENSRNOG00000027444 ENSRNOT00000038074 3 1 1 80 6 72996702 73104493 TACTGAGACAGGTTGATTGGG 60 73104534 73104553 CTGATAACTGCACGTCTCCT 60 NA Rattus norvegicus 81 Ikzf3 ENSRNOG00000007200 ENSRNOT00000009454 2 1 1 81 10 86442564 86446157 ACATTCTGTGGAGAAGCCC 60 86442501 86442519 TTCCTTGTGTTCCTCCAGG 59 NA Rattus norvegicus 81 Olr1411 ENSRNOG00000032495 ENSRNOT00000049730 1 1 1 83 10 36554929 36554948 TCCTCGATTCCAGAGATCTC 58 36554993 36567790 TTGATTGACTCGAGTGTCTG 58 NA Rattus norvegicus 81 LOC102553249 ENSRNOG00000045707 ENSRNOT00000075012 2 1 1 80 3 167225454 167225475 CTGAATCCTTCTCAGAAGAGTC 58 167225084 167225418 CCAAATGTATCCTATAGCACTGAG 59 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325,ENSRNOT00000073757 3 2 2 80 12 22446375 22446393 CAACTGAGTAAGGCCTGGA 59 22446701 22446844 TGATAGTCTTATCAGTGGTAGAGC 59 NA Rattus norvegicus 81 Ppef2 ENSRNOG00000052061 ENSRNOT00000077636 1 1 1 80 14 17316918 17316938 AAGCTACAATTCCTGATCCGA 59 17315149 17316876 AATGGTTAACACCTTGCGG 59 NA Rattus norvegicus 81 Utp14a ENSRNOG00000005012 ENSRNOT00000048022 3 1 1 80 X 135112676 135112696 CCTCCTGACTACAAGAACTCC 60 135112734 135113503 CTCTTCACTTCATCATCCAACTC 59 NA Rattus norvegicus 81 Rab40b ENSRNOG00000036661 ENSRNOT00000054917 3 1 1 83 10 110558969 110559453 CAAGCAAAGTACTGAGTTTGC 58 110558906 110558924 GAGGGAGCTTGTCTACCAG 59 NA Rattus norvegicus 81 Alkbh1 ENSRNOG00000012264 ENSRNOT00000016389 1 1 1 80 6 111459219 111461325 GTCCTTCAGCTTTGGACAG 59 111459157 111459175 TGCATAAACATGGCTGTGG 59 NA Rattus norvegicus 81 Cyba ENSRNOG00000013014 ENSRNOT00000017564 3 1 1 83 19 55252349 55252367 GAGTGCTCATCTGTCTGCT 60 55252095 55252303 TCAGGTACTTCTGTCCACAC 59 NA Rattus norvegicus 81 Cdk17 ENSRNOG00000004148 ENSRNOT00000005762 1 1 1 80 7 34057143 34057161 TCTGATGAAGTCCAGTCCC 58 34057202 34058326 CTTATTCAAGTCCTCCATCGAG 59 NA Rattus norvegicus 81 Mir6321 ENSRNOG00000049481 ENSRNOT00000073362 1 1 1 60 14 21097454 21097473 TGTTGAAGTCTCAGGTAGCA 59 21097413 21097433 GAGGCTTCATAGAACTCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnp1 ENSRNOG00000017611 ENSRNOT00000023769 2 1 1 118 9 80295378 80295396 ATGAGGAGAGGCAAGAACC 59 80295080 80295298 TAATTGCGACTTGCATCATCG 60 NA Rattus norvegicus 81 March1 ENSRNOG00000026310 ENSRNOT00000032289 1 1 1 82 16 25001957 25014627 GTAACGACAATGGTGTGCTG 60 25001894 25001912 GAAGACGAGACCTCCTGTG 60 NA Rattus norvegicus 81 Olr862 ENSRNOG00000046223 ENSRNOT00000072067 3 1 1 60 5 137603003 137603023 GTGTCTGTGGTTTCTTCTCTG 59 137602963 137602982 CAATAGGGCAGTCTCATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762,ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 3 10 10 80 7 117244591 117244609 GGAGTTGGAATTGACCCTG 58 117243408 117244549 CTGATGGTCTTGAGTTTCTCC 59 NA Rattus norvegicus 81 Olr598 ENSRNOG00000045832 ENSRNOT00000039963 3 1 1 60 3 76052683 76052701 ATGGTAGACGCTTTGACAC 58 76052724 76052743 CATTGGACCGACAGAAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bms1 ENSRNOG00000006576 ENSRNOT00000008741 2 1 1 80 4 150451233 150451251 AGATTGCTTTGTGACTGGG 58 150449260 150451189 TCACCATAGAGCTCTTCGT 58 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 1 2 2 80 20 29411309 29411330 CCTGAAGAACATTAATGACGTG 58 29411370 29429207 TGCATGGTCACTTTATCGAG 58 NA Rattus norvegicus 81 LOC679195 ENSRNOG00000029868 ENSRNOT00000045263 1 1 1 60 13 37697420 37697438 GATCAACAAGTCCACACCC 59 37697378 37697397 AGGCATGTTCCCATTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex19.2 ENSRNOG00000036671 ENSRNOT00000054927 3 1 1 197 10 110307578 110307597 GCCTGTCTACTTCTCCAGAG 59 110307279 110307297 TTCTCCATGGACAAGCTGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 3 4 4 80 7 142048708 142050535 GATTCCAGACGATGGTGCT 60 142048646 142048665 GAAGAGTTGCTGTAAGCAGG 59 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 2 2 2 80 13 101011950 101012899 TATGCCAAGCTAAATGGTTCG 59 101012941 101012959 GATGCCACCTGTGAAATCC 59 NA Rattus norvegicus 81 Fpr-rs4 ENSRNOG00000043056 ENSRNOT00000066769 1 1 1 60 1 86074275 86074294 CCAGCAAACACTTTAGCCTC 60 86074313 86074335 CGAGAAAGACATAGAGTATTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim6 ENSRNOG00000017147 ENSRNOT00000023043 2 1 1 80 1 169416859 169416878 TTTGTGAGCGATCTCTGGAG 60 169416920 169417418 GGAACATGTCCTGGTACTCC 60 NA Rattus norvegicus 81 Olr658 ENSRNOG00000049836 ENSRNOT00000007996 1 1 1 60 3 77127046 77127064 ATCCTAGTCACCATCACCT 57 77127004 77127025 GGCAGAGAAAGTAGTACATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pradc1 ENSRNOG00000050483 ENSRNOT00000073135 2 1 1 81 4 117231280 117231301 GGAGATGATCCAGGATAGTACC 59 117231007 117231239 TCGGATCATGTAGCCATCTC 59 NA Rattus norvegicus 81 LOC686900 ENSRNOG00000049864 ENSRNOT00000072638 3 1 1 60 3 77226266 77226287 ACTCATCTTTACCTATGTCCCA 59 77226227 77226248 CAGAGCAAATACCTTGTCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 3 1 1 60 8 43480641 43480693 GGTAAAGCTGAAGACAAGGAG 59 43480601 43480619 TGTCCTTAACCAGGTGACC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07052768.2 ENSRNOG00000055669 ENSRNOT00000068048 3 1 1 60 3 74567492 74567513 CAATGTATTTCTTCCTCACCCA 59 74567453 74567475 GTGATGACAGTTGAGTAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr625 ENSRNOG00000050217 ENSRNOT00000051292 1 1 1 60 3 76626385 76626405 GGACATTTGCTATACCTCCTG 58 76626345 76626364 TCTCCTTACAAGCAGATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmx1 ENSRNOG00000057934 ENSRNOT00000087540 2 1 1 86 6 92869783 92869801 CATGGTTTGGTCCAAGCTC 59 92871194 92871298 AATAGCTGTGGCTAGTCCTG 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 1 1 3 89 20 31273158 31273176 CAGTCACAGGAATCACTGG 58 31275564 31276863 GTCCTTTGTAGCAATCTCCA 58 NA Rattus norvegicus 81 Olr592 ENSRNOG00000049572 ENSRNOT00000075834 2 1 1 60 3 75971198 75971220 GTCTGTCTATGTGGTTGTTATGG 59 75971236 75971258 GGATGTTAGCACCAGAATAAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rras ENSRNOG00000037247 ENSRNOT00000027809 1 1 1 80 1 101016209 101016227 TTACTTTGAGGCCTCAGCC 60 101016271 101016362 TGGTATTTCCGGACAGTCC 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 3 2 2 81 2 248723399 248724221 ATTGGCAAGGGTACAGGAG 59 248724265 248724284 CAGAGCTGCTCATTGTTCTC 59 NA Rattus norvegicus 81 Usp12 ENSRNOG00000033411 ENSRNOT00000044038 3 1 1 84 12 10085221 10085241 GTTTAACACTTCAGGAGACGC 60 10085287 10086413 ATTGGGACCACTTCCACAG 60 NA Rattus norvegicus 81 Fbxl20 ENSRNOG00000005081 ENSRNOT00000067317 1 1 1 80 10 86052864 86052884 CATTCAAGCACTAGTGAGAGG 59 86051402 86052825 AGAGCTTCATCTTCTAGCTGAG 60 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 2 2 2 100 4 178069483 178075006 GATACTGGGATCTCGTTGGA 59 178069402 178069420 CTGGGTACTTCTCCAGGTG 59 NA Rattus norvegicus 81 Olr1499 ENSRNOG00000061111 ENSRNOT00000083428 2 1 1 60 10 60572346 60572367 GGTCTCTACTTATGTCCATCAG 58 60572307 60572327 TCATAGCCATGACAATCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syn2 ENSRNOG00000008157 ENSRNOT00000011292 3 1 1 80 4 147165933 147165951 GCAGAACCCTTCATTGACG 59 147165994 147172928 GGATGTCCTCATGTAAGCCT 59 NA Rattus norvegicus 81 Vsig8 ENSRNOG00000008668 ENSRNOT00000011539 2 1 1 67 13 90949381 90949700 AAAGTCTCAGACTCCCAGC 59 90949731 90949749 GCTAGCATGAGCAAAGAGC 59 NA DesignRelaxed Rattus norvegicus 81 Slc8a3 ENSRNOG00000029871 ENSRNOT00000048606 2 1 1 80 6 104898110 104902634 TTATCTCCAGAGGTGACAGAC 59 104898050 104898069 TACTGGCTTTCCCATCTCTG 59 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292,ENSRNOT00000084238 1 2 3 80 2 154567244 154567264 GACAGTGTAGACAAAGTAGCT 58 154567304 154569736 AGATTCATTGGCTATACCTGC 58 NA Rattus norvegicus 81 Cks1l ENSRNOG00000032516 ENSRNOT00000052379 1 1 1 60 5 110832036 110832058 GAATCTGAATGGAGAAATCTCGG 59 110831998 110832019 GGATCATATAGTGAACCCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Panx3 ENSRNOG00000031675 ENSRNOT00000042717 3 1 1 81 8 40136958 40136977 GGTCAAGTTCGTTACTGTGG 59 40134615 40136914 GATCGGAGACCCTGATGAG 59 NA Rattus norvegicus 81 Rassf6 ENSRNOG00000002866 ENSRNOT00000003836 1 1 1 80 14 19017082 19017104 CGTATTAGTGAGATGGACAAGAC 59 19017138 19017878 GCTGTAGCAAGATAAATAGTCTTCC 60 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382,ENSRNOT00000067141 1 3 3 95 19 53641908 53642511 ATAATTAGAAGGCGCCTGC 58 53642570 53642588 TTCAGAGATGGGTGTGGAC 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382,ENSRNOT00000067141 2 3 3 96 19 53641907 53642511 GATAATTAGAAGGCGCCTGC 59 53642570 53642588 TTCAGAGATGGGTGTGGAC 59 NA Rattus norvegicus 81 March5 ENSRNOG00000017396 ENSRNOT00000023562 2 1 1 80 1 255861412 255861579 ATATTTCCAGGGATTGGTTGTC 59 255861616 255861638 TCTAGTAGCAGAGACATGATCTG 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432,ENSRNOT00000085655 3 3 3 80 18 63036454 63039322 AACTTTGTGCACAGATTCCC 59 63040957 63040977 GTGAATCACTCCGAATTCCAG 59 NA Rattus norvegicus 81 Rn60_4_2163.2 ENSRNOG00000042507 ENSRNOT00000034180 3 1 1 61 4 150301920 150301938 CCTGAAGCGTTTACTGCTG 59 150301877 150301897 CAGTTTCTCAATCAGGTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap17b ENSRNOG00000009746 ENSRNOT00000039809 1 1 1 87 X 123220974 123224706 AACTGTCTGGGATCCACAC 59 123220905 123220923 ATTTCACTGTGGTCCCTGG 60 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423,ENSRNOT00000080686 2 2 2 192 5 171459140 171459159 CAAGGAGTACTTCGTGTTCC 58 171458898 171458920 GAAGTCATATTTGCAGATGAGC 58 NA Rattus norvegicus 81 Olr1386 ENSRNOG00000046838 ENSRNOT00000047186 3 1 1 60 10 34383532 34383552 TCATCCTCCTCATCTACACTG 59 34383571 34383592 TGACTGAGGAAGAAGTACATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794 2 1 2 80 20 30969449 30969467 TCATGAGAACCTCAGGGAC 58 30967706 30969406 AAGTCATGGATCTCTTTCCG 57 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 1 2 2 80 3 79257481 79257501 GTTTACCTAAATATGCAGCGG 58 79254704 79257442 GAGAAATATCATAGGGCAGGAC 58 NA Rattus norvegicus 81 Wdhd1 ENSRNOG00000011167 ENSRNOT00000015100 3 1 1 80 15 24028437 24028456 GTTGAAGAAGATGCTGAGGA 58 24028015 24028395 GATTAAGTTCTGCCCATGGT 58 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 1 2 2 91 17 76008864 76008884 CAAGGCCGTTATCACACTG 59 76016102 76016120 TTGACCATGGCAATGATGG 59 NA Rattus norvegicus 81 Rn60_13_0844.1 ENSRNOG00000051105 ENSRNOT00000076665 3 1 1 60 13 79493502 79493522 GCTCCAATATGACTCTACCCA 59 79493540 79493562 CTTCCTATTCTCATCCTTGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cst8 ENSRNOG00000004989 ENSRNOT00000006667 2 1 1 81 3 143135781 143155906 CTTCCCTGGAATGTGTCAG 58 143155951 143155969 GTAGATGTAGCCAGCAAGG 58 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 3 1 1 62 17 66240143 66240335 GGAAAGAGGTGCAAAGAAGAC 60 66240359 66240377 GAGCTTTCACCCATCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm46 ENSRNOG00000025823 ENSRNOT00000035846 2 1 1 82 2 181861691 181861709 GATAAACTCTGCACAACGC 57 181831428 181861645 CGACGGAAATTGTAGTCCA 58 NA Rattus norvegicus 81 Olr556 ENSRNOG00000043492 ENSRNOT00000066249 1 1 1 60 3 75323313 75323333 ATTCCAGTAGAAATTGGGCAG 58 75323355 75323373 TGTTAGAAGCACAGAAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyrm1 ENSRNOG00000024530 ENSRNOT00000033673 3 1 1 105 1 189683305 189684960 CCAGACCGATCCATCTACC 59 189685026 189685047 GACTTCAGATACAGTGGTTTGG 59 NA Rattus norvegicus 81 Fam185a ENSRNOG00000048371 ENSRNOT00000074662 2 1 1 108 4 10269375 10269393 CAGACGACATTGATCCCGA 60 10266541 10266559 ATATTCTGCACGCTCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Med22 ENSRNOG00000049749 ENSRNOT00000066193 2 1 1 81 3 5458496 5458515 ATAACAAGCGGCTCAAAGAC 59 5457282 5458452 TCATCCTCAATCTTGGCCG 60 NA Rattus norvegicus 81 LOC100360908 ENSRNOG00000043249 ENSRNOT00000066168 3 1 1 87 16 20464563 20466246 TTACATGTACAGGTGTTGCT 57 20464495 20464516 GAGGTTGTCTGTATTGATTCTG 57 NA Rattus norvegicus 81 Ifitm1 ENSRNOG00000004273 ENSRNOT00000005645 1 1 1 81 1 213766957 213766975 GGTCCCTGTTCAATACGCT 60 213767018 213767528 CTGTCCCTAGACTTCACAGAG 59 NA Rattus norvegicus 81 AC099183.3 ENSRNOG00000060941 ENSRNOT00000074099 2 1 1 137 10 87529562 87529580 GATCCTTCTCCTCCCAGAG 58 87529443 87529461 AGATGGGCCTAGTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klri2 ENSRNOG00000057643 ENSRNOT00000078642 2 1 1 82 4 163570608 163570628 ACAGGAACTGAAAGTTCACAC 59 163569494 163570564 TCAACCAGGGATCTGTTCC 59 NA Rattus norvegicus 81 Acss2 ENSRNOG00000018755 ENSRNOT00000064013 1 1 1 80 3 151062848 151067981 TCCAGATGTCCAGATCTCC 58 151068025 151068043 TCAAACTCATCTCCTGCCT 58 NA Rattus norvegicus 81 Dnajc24 ENSRNOG00000004842 ENSRNOT00000006431 1 1 1 80 3 96030005 96030025 AGATGAGCTAAGAAATGTGGG 58 96025780 96029966 AAAGACTCCTCATCTTTGTTCC 58 NA Rattus norvegicus 81 Scrn2 ENSRNOG00000010214 ENSRNOT00000013580 3 1 1 88 10 84970224 84970243 CCAGTATGGTGTCAGTCCTG 60 84970294 84970394 GAATACCGACCTGGATGGG 60 NA Rattus norvegicus 81 AABR07017658.1 ENSRNOG00000046197 ENSRNOT00000075008 1 1 1 60 15 29680305 29680417 GGGATAAACTTTCTCCTGAGAG 58 29680266 29680285 CACGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr808 ENSRNOG00000029299 ENSRNOT00000048987 3 1 1 60 4 72273458 72273479 CTTACATCCAGATCATCTCCAC 58 72273500 72273518 GCCTTTCTCCTTCCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp13a4 ENSRNOG00000001714 ENSRNOT00000002333 3 1 1 80 11 74943752 74943772 CCATCTTTGCAAGAATGTCTC 58 74943813 74945615 ACATACCCACAAAGTAGTCC 57 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000001075 3 1 3 108 20 40683499 40683517 ACAGGACACCATGGATGTG 60 40683588 40701728 CCTCATCACAGAGTCTTGCT 60 NA InUTR Rattus norvegicus 81 Ppm1d ENSRNOG00000003329 ENSRNOT00000004540 3 1 1 80 10 72924849 72924868 GACACAAGATCACAAGCCAG 59 72924909 72931330 CCAGACTTGTTCATCACACTC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090,ENSRNOT00000090218 1 2 2 80 4 152955818 152956182 ATGACATGAAGGATACAGCCA 59 152956221 152956242 TGATAGGAATCTCTTCATCGCA 59 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629,ENSRNOT00000068177,ENSRNOT00000041994,ENSRNOT00000067886 2 4 4 80 16 23752837 23758926 TTATCCCAGGAGGAACAGC 59 23758969 23758988 ATATGAGCGATGTTCAGCCA 60 NA Rattus norvegicus 81 Abhd17c ENSRNOG00000012683 ENSRNOT00000017362 2 1 1 86 1 146253428 146253446 CTCTGATGTCTGGATTGCG 58 146249905 146253381 TAGATATCTTGTCAATGCTGGG 58 NA Rattus norvegicus 81 Map2k2 ENSRNOG00000020005 ENSRNOT00000027272 1 1 1 83 7 11464788 11464806 TAGGGAAGGTCAGCATTGC 60 11463949 11464038 AGGGCTTCACATCTCTATGC 60 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 2 2 2 80 2 243429659 243429678 TACTTGACAAGCCATGGAGG 60 243429718 243431340 GTGAATATCCTTCCAGTTGACC 59 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000007158 2 1 2 84 10 47131590 47131608 CCGAGAGTCTCCAAGATGG 59 47118013 47131542 CTGACAGGCTAACCCTCTC 59 NA InUTR Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000068003,ENSRNOT00000077857 1 2 2 80 13 48828477 48833438 GTTCATCAATGTGGTGGGAG 59 48828416 48828435 CCCACAAACAGGAAGTTGAC 59 NA Rattus norvegicus 81 Sfxn2 ENSRNOG00000049308 ENSRNOT00000071243 1 1 1 80 1 266341718 266344080 CAGTTCTACAGGACCATGC 58 266344123 266344142 GTTGGTGTAGTTGACCAAGG 59 NA Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 3 2 2 80 1 257902411 257912905 AAGATGTTAGAAGAGGCTCG 57 257912947 257912966 TTCAAGCAAATGTTGCAGTC 58 NA Rattus norvegicus 81 Pcdhb4 ENSRNOG00000027469 ENSRNOT00000027210 1 1 1 60 18 30388525 30388545 AGAAATGCTCCTAACAATCCC 58 30388566 30388585 TGCCTTTAGAGGAAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dram1 ENSRNOG00000038916 ENSRNOT00000059487 2 1 1 80 7 28932442 28932461 TCATCATCTCCTACGTGGTC 59 28921369 28932400 GAGTTGTTCCTGTGTCACTG 59 NA Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 3 2 2 80 10 45905791 45908375 AGAAACTCTGGTTGGTCAG 57 45908419 45908437 GAGAATGGTTGGAGCTCAG 58 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 1 2 2 80 17 77686401 77686421 TAATCAAGTCTATCTGGGCGA 59 77680010 77686362 CATGGATCTTGGACTTACTCTG 58 NA Rattus norvegicus 81 Pcdhga7 ENSRNOG00000027290 ENSRNOT00000027015 2 1 1 60 18 30866434 30866452 CACACTTTGTAGGCTTGGA 58 30866474 30866494 GAAACCTCGTGGGAATATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf1 ENSRNOG00000061088 ENSRNOT00000087298 2 1 1 80 7 141889561 141889580 CTTCAGAGACTGCATCACAG 58 141889623 141905479 CTGACAACGATGACACCTG 59 NA Rattus norvegicus 81 Ptp4a2 ENSRNOG00000050044 ENSRNOT00000074415 1 1 1 80 5 148054488 148054506 ACTTTGGTCCGAGTTTGTG 58 148054550 148057665 AAATGGCCAGTCTAGAACG 58 NA Rattus norvegicus 81 Csgalnact1 ENSRNOG00000013024 ENSRNOT00000017822 1 1 1 80 16 23069728 23073078 CATCAACATAGGTGGATTTGAC 58 23073115 23073137 CTATGGAGATATTTCCGGTACAG 58 NA Rattus norvegicus 81 LOC361346 ENSRNOG00000028677 ENSRNOT00000014670 3 1 1 80 18 68974563 68978064 GTCCCTGTTACTTTCAAATCTCC 60 68974505 68974524 CTCAAGACACTTTGTCCTGG 59 NA Rattus norvegicus 81 AC095263.1 ENSRNOG00000054374 ENSRNOT00000078918 2 1 1 80 20 7140512 7140635 ACCCTAAGGTGGTTCATGG 59 7140450 7140471 CAGACCTTCATGTCTTGATGTC 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000082962 1 1 4 88 2 149530408 149532043 AGCTTTCTAGTAATCAGCCAC 58 149532093 149532111 ACAACCTTCGTGTCTTCTC 57 NA Rattus norvegicus 81 Pfkp ENSRNOG00000017163 ENSRNOT00000023252 1 1 1 80 17 68539671 68539689 CATTGTGTCTGAAGGAGCA 58 68537946 68539628 AAATTTGTCACCACAAGCTC 57 NA Rattus norvegicus 81 Psmf1 ENSRNOG00000009640 ENSRNOT00000029620 1 1 1 80 3 147248571 147252905 TGAGTGATTTCCACAGGACC 60 147248510 147248533 CATGGATAGGTGTGATAATTCCAG 59 NA Rattus norvegicus 81 Snai3 ENSRNOG00000013586 ENSRNOT00000018387 1 1 1 101 19 55278728 55279904 CCATACAGGTGAGAAGCCT 59 55278645 55278663 TTCTTGGTACCAGCGTGAG 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 2 2 2 80 3 5118968 5118988 CCGAAATGCTACTCACTTCAC 59 5119030 5119672 GCTCAGGAATCCATAGCCA 59 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141,ENSRNOT00000066975 1 2 2 80 7 49131613 49131631 GCAATTAGAGCCATCCGTC 59 49113327 49131572 AAACAGTGTCTTGAACCTTGTC 59 NA Rattus norvegicus 81 Grik4 ENSRNOG00000030910 ENSRNOT00000048347 3 1 1 80 8 46806872 46810079 CAGAAGCATCAGAGGTGTC 58 46806810 46806829 GATGGATATTGTCCTGGCAC 59 NA Rattus norvegicus 81 Mir3102 ENSRNOG00000049574 ENSRNOT00000074461 2 1 1 63 1 165921237 165921255 TCTATTGCGGGCTCTACTC 59 165921192 165921210 CTGTGTACCTGTGGGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000058492 3 1 2 81 12 36313967 36313986 GAGTGAACTCTTCGTCTCTG 58 36269515 36313923 AACTTCTGTGTCCATGGTG 58 NA Rattus norvegicus 81 Gpatch2 ENSRNOG00000002512 ENSRNOT00000040543 1 1 1 82 13 105701769 105701787 AAGCTAGACTCAGTTGCCT 58 105701832 105775861 AGCAGACATCATTGAAGGTG 58 NA Rattus norvegicus 81 Gpatch2 ENSRNOG00000002512 ENSRNOT00000040543 3 1 1 83 13 105701768 105701786 CAAGCTAGACTCAGTTGCC 58 105701832 105775861 AGCAGACATCATTGAAGGTG 58 NA Rattus norvegicus 81 Mob1b ENSRNOG00000010996 ENSRNOT00000014650 2 1 1 80 14 20971982 20992495 TTCTTGTTTGGTAGTCGCTC 58 20971921 20971942 TAAGAGCTCATACTGGTGAGAC 59 NA Rattus norvegicus 81 Tbxa2r ENSRNOG00000020585 ENSRNOT00000027932 2 1 1 80 7 11254779 11254798 TGGAGATGATGGTTCAGCTC 60 11253897 11254736 TCTGCAGGATGAAGACCAG 59 NA Rattus norvegicus 81 LOC100360432 ENSRNOG00000032925 ENSRNOT00000052236 1 1 1 60 3 151691688 151691708 CCACATTTCCTATCTCTTGCC 59 151691728 151691748 TCAAGGTGGTTGATGTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gins2 ENSRNOG00000017575 ENSRNOT00000023709 3 1 1 80 19 54158924 54158942 AAGGAGGAGACTTTCACCC 59 54154909 54158882 GTTGTCAGAAGCATGATTCAG 58 NA Rattus norvegicus 81 Bmp8b ENSRNOG00000033209 ENSRNOT00000050949 3 1 1 80 5 140818130 140818596 CCTAGGAATCTTTGATGATGGC 59 140818636 140818655 TCACGGAAGCTGACATACAG 60 NA Rattus norvegicus 81 Dpp8 ENSRNOG00000019105 ENSRNOT00000025873 3 1 1 80 8 70540732 70542353 CACAAGCCGAAAGAACTCC 59 70542393 70542415 TAATCTCCACCTCAGATTCATCG 60 NA Rattus norvegicus 81 Nqo1 ENSRNOG00000012772 ENSRNOT00000017174 2 1 1 81 19 38431938 38431956 GAGAGTGCTTGTAGCAGGA 59 38431998 38433638 AAGCAAGGTCTTCTTATTCTGG 59 NA Rattus norvegicus 81 Ptpn5 ENSRNOG00000013981 ENSRNOT00000018860 3 1 1 80 1 103203711 103206864 CATCCTTCCCAATCCTCAC 58 103203649 103203669 TTGGCATTGATGTAGGAACTC 58 NA Rattus norvegicus 81 Rpl41 ENSRNOG00000042233 ENSRNOT00000066159 2 1 1 80 7 2973782 2973915 CCATCTTCCTTGAGACTCCT 59 2973200 2973219 TTTCTTCTCTTGCGCTTCAG 59 NA InUTR Rattus norvegicus 81 Cyb5a ENSRNOG00000015205 ENSRNOT00000020446 2 1 1 80 18 81694990 81713718 GTTTCTCGAAGAGCATCCT 57 81713762 81713780 ACGTCCTCAAAGTTCTCAG 57 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 1 2 2 81 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827601 8827619 GAACATTGTTGCCCAGGTG 60 NA Rattus norvegicus 81 Cyp2d5 ENSRNOG00000029128 ENSRNOT00000046024 3 1 1 80 7 123619019 123619037 ACCTCATCAGGATGCTGAC 59 123618343 123618977 GGAACGTGTTAAGAACCTCAG 59 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357,ENSRNOT00000080666 1 3 3 80 10 46129355 46129374 AAAGCAATCCTGACTTCCTG 58 46129416 46129840 CAATTACGGACTTGGACCTG 59 NA Rattus norvegicus 81 Mical3 ENSRNOG00000053203 ENSRNOT00000082982 2 1 1 80 4 153591803 153591821 CATGATCTTCGAGGTCTGG 57 153589895 153591759 CTGACGGATACTGATGTGG 57 NA Rattus norvegicus 81 Stmn2 ENSRNOG00000011705 ENSRNOT00000015720 1 1 1 80 2 95443545 95443564 TATGCTGTCACTGATCTGCT 59 95439715 95443502 TTCACCTCCATGTCATCGT 59 NA Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 1 1 1 227 5 166870243 166871269 GCTTTCTGAAGTCACAGGA 57 166871459 166871478 GGTAGATCTCCTCCAAGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07016841.1 ENSRNOG00000006051 ENSRNOT00000008154 3 1 1 60 15 1055158 1055179 TGGAGAAGAGAATAAATGCTGG 58 1055198 1055218 TGTTACAGATGACAGAGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prame ENSRNOG00000011113 ENSRNOT00000049735 1 1 1 80 X 106085631 106085650 CAACGTGAACTCCTGAAAGC 60 106085065 106085594 CAATTTAGGACTCCTAGAAGAACAG 59 NA Rattus norvegicus 81 Snapc3 ENSRNOG00000010825 ENSRNOT00000015254 1 1 1 80 5 101549829 101549853 CTTGGCTTTCCTTACTTATACTGTC 60 101549889 101550960 ATGATGCACAAGCCTTATGTC 59 NA Rattus norvegicus 81 Ncln ENSRNOG00000004793 ENSRNOT00000007110 3 1 1 82 7 11086709 11086727 ATCTCTGTACTGCTGGAGC 59 11086773 11087631 AACAGAAGGTTGTACGCTG 58 NA Rattus norvegicus 81 Nell1 ENSRNOG00000015675 ENSRNOT00000056030 3 1 1 80 1 105600840 105611610 GGAATGTCGAGGTGGAGTC 60 105611649 105611672 GGAAGAATATGATCCTTTGCTGAG 60 NA Rattus norvegicus 81 LOC100360619 ENSRNOG00000053623 ENSRNOT00000087392 2 1 1 67 19 38643184 38643202 AAGTCCTCCGAAGAGACTG 59 38643319 38643337 GTTGATGGCGGTGAAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 2 2 2 107 2 54819098 54823567 TTAAAGCAGGAAGTTCCACG 59 54819010 54819028 GAGCTCTGCTATTTCTGGG 58 NA Rattus norvegicus 81 Myod1 ENSRNOG00000011306 ENSRNOT00000015109 1 1 1 81 1 102397367 102397839 ATGGCATGATGGATTACAGC 59 102397883 102397901 GACGCCTCACTGTAGTAGG 59 NA Rattus norvegicus 81 Tm6sf2 ENSRNOG00000042237 ENSRNOT00000027800 3 1 1 80 16 21097646 21098309 TCTCTATGCTGTCTTTGTGG 57 21097585 21097605 ATCAAGTAGCCATCTTCTTGG 58 NA Rattus norvegicus 81 Dpp3 ENSRNOG00000031485 ENSRNOT00000026968 3 1 1 80 1 220182639 220183878 CCTGGACTCTCAGAACCTC 59 220182577 220182596 ACCTCATAGTGGTACTTCCC 58 NA Rattus norvegicus 81 Nceh1 ENSRNOG00000013313 ENSRNOT00000017805 3 1 1 90 2 112929545 112931209 TGGACAGCAGTTTACCTACG 60 112931262 112931280 GTTGAAGTCCAAAGCCTGC 60 NA Rattus norvegicus 81 Ppp1r1b ENSRNOG00000028404 ENSRNOT00000037752 3 1 1 96 10 86306287 86310333 CCATCACTGAAAGCTGTGC 60 86310392 86310411 CTAACTCGTCCTCTTCCTCC 59 NA Rattus norvegicus 81 Mir16 ENSRNOG00000035504 ENSRNOT00000053627 2 1 1 67 2 165606094 165606114 CACGTAAATATTGGCGTAGTG 58 165606142 165606161 CTGTCACACTAAAGCAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1622 ENSRNOG00000008804 ENSRNOT00000011636 1 1 1 60 15 27438909 27438929 TCCCTGGAAGATTCAAATCAC 58 27438946 27438969 CAAAGTTATCATGTAGACCAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr151 ENSRNOG00000027103 ENSRNOT00000043544 1 1 1 60 18 36892750 36892769 CCAGAAAGCCTGTAGTTACC 58 36892709 36892727 AGGGTCTCAATGTTTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mef2d ENSRNOG00000031778 ENSRNOT00000051394 2 1 1 86 2 187527813 187528773 GCTATGGGTCATCTGTTCC 58 187528823 187528841 GATTGCTGAACTGCATGGA 59 NA Rattus norvegicus 81 AABR07035776.1 ENSRNOG00000050059 ENSRNOT00000072653 2 1 1 81 12 21932325 21932345 TCTTCTGCAAACAACAGAAGG 59 21932388 21937334 GGTGCTGGTGTTATTGGTC 59 NA Rattus norvegicus 81 Slc30a10 ENSRNOG00000002397 ENSRNOT00000049499 1 1 1 80 13 103404501 103405654 ACATGGAGGAGCTGATGAG 59 103405696 103405716 TTATCAGTTCCCAGATGTGCA 60 NA Rattus norvegicus 81 Rnf43 ENSRNOG00000007606 ENSRNOT00000010296 3 1 1 85 10 74959523 75013548 GGAAGCTAATGCAGTCCCA 60 75013596 75013615 CTTGACGATGCTGATGAAGC 60 NA Rattus norvegicus 81 Ppp1r3d ENSRNOG00000053869 ENSRNOT00000090468 2 1 1 63 3 173953054 173953072 GGATTTGTGCTGCAGTAGC 60 173953009 173953027 CTGGAAGTCAGGAACCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 1 2 2 80 1 142973167 142973185 CATCTTCTTCAGCTGCGTC 59 142973228 142977077 ATCAACCAGGCAATCTTCAG 58 NA Rattus norvegicus 81 Ccl20 ENSRNOG00000015992 ENSRNOT00000021730 1 1 1 91 9 88919646 88919664 ACGTGTATCATCATGCGAG 58 88919716 88919868 CTTCAGGTGAAAGATGATAGCA 58 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062,ENSRNOT00000090832 2 2 5 84 9 81675650 81675668 AGTTCCTACAGCGAATGGG 60 81675830 81675848 AGATCAGCTACAGGGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 3 2 2 80 18 68995290 68997658 CATTATCAGTACTAGGAGTGTGGA 59 68997697 68997715 CCGGAGGGATGGTTATAGC 59 NA Rattus norvegicus 81 Olr763 ENSRNOG00000042991 ENSRNOT00000046220 1 1 1 64 3 102683154 102683401 AAAGCAAATCGCTCTGCAG 60 102683427 102683447 TGAAGTTCCTGAGAGTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910829 ENSRNOG00000047507 ENSRNOT00000071447 1 1 1 60 4 117568222 117568240 CTGACACTGCCTCATTCTC 58 117568180 117568200 ACACTAGGATTATGGTCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr422 ENSRNOG00000032102 ENSRNOT00000044461 2 1 1 60 3 21060913 21060931 TTGTTGCTTGTTCAGACCC 59 21060871 21060889 GAAAGTTGGCTGAGAAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp1b ENSRNOG00000001194 ENSRNOT00000001583 1 1 1 80 20 10863021 10863039 GTCAGAGAAGGCACAAGAG 58 10863082 10863756 CAGAGACTGTGTTTCCTTCC 58 NA Rattus norvegicus 81 Eif4e3 ENSRNOG00000010301 ENSRNOT00000013719 3 1 1 91 4 132083994 132084012 ACAACATCCCTCCTGTGAC 59 132082541 132083941 ATTACTCTCCTCTTCCCACAG 59 NA Rattus norvegicus 81 Pard6g ENSRNOG00000055157 ENSRNOT00000084621 2 1 1 81 18 76559934 76590089 GAAGTCAAGAGCAAGTTTGG 57 76590130 76590151 GGTAGAAATCTTCAAACTTCCC 57 NA Rattus norvegicus 81 Rhox3 ENSRNOG00000040010 ENSRNOT00000041904 3 1 1 82 X 124575548 124575567 GCTTCCTCAGTGTAGAAGCA 60 124572150 124573499 CTTCCGAAACCATCTCTTCAC 59 NA Rattus norvegicus 81 Arrdc5 ENSRNOG00000047223 ENSRNOT00000073054 3 1 1 81 9 10762778 10762796 CCAAGAAGAGGCTGTACCT 59 10762840 10765661 TCTACAGACAGTGGGTTCTC 59 NA Rattus norvegicus 81 AABR07036698.1 ENSRNOG00000046702 ENSRNOT00000075665 2 1 1 80 X 586451 586469 AAAGCTGACCAAATGGCAG 59 586513 587156 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291,ENSRNOT00000043199 2 2 2 80 4 99786215 99787542 TTGAATTTGAACAGGACCTGTC 59 99787581 99787601 TGTCCATTTGTTCTTGACTGC 60 NA Rattus norvegicus 81 Olr712 ENSRNOG00000058008 ENSRNOT00000044992 2 1 1 60 3 78571133 78571152 TGACACCTACTTCATTGGAC 57 78571092 78571111 GATGACTATACACATGGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000086146 2 1 4 80 9 81579496 81579693 TCTATACCAAAGACTCAGGACTC 59 81579438 81579456 CAGGGTAAATGACACTCGG 58 NA Rattus norvegicus 81 Gigyf1 ENSRNOG00000001410 ENSRNOT00000001912 1 1 1 80 12 22238430 22238735 CTTCATCACAGTCAGGTGG 58 22238368 22238388 GTTGTTCTAGAATTGGACCCT 58 NA Rattus norvegicus 81 LOC100911372 ENSRNOG00000007663 ENSRNOT00000010383 1 1 1 80 5 105212093 105212112 AGCTTCGTACGTTCTATGAG 57 105211689 105212050 CCACATAACCCTTCCACTC 58 NA Rattus norvegicus 81 Depdc7 ENSRNOG00000012262 ENSRNOT00000016677 3 1 1 80 3 94668773 94670869 GGTGACTCTCAGGAAGATGAG 60 94668713 94668732 TATGTCCACAACCATCTGGT 59 NA Rattus norvegicus 81 Cant1 ENSRNOG00000003239 ENSRNOT00000066303 1 1 1 80 10 107436909 107436928 TCTACCAGATCGAAGGTACC 58 107435008 107436866 CTTTGAAGCCCTTCTCCAC 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673,ENSRNOT00000091461 1 2 3 80 20 3346192 3346211 GATGCTTCATCCTCACTTCC 59 3346253 3346366 GCGGTTCTGGTATTCTTCTG 59 NA Rattus norvegicus 81 Gba ENSRNOG00000049281 ENSRNOT00000074727 1 1 1 80 2 188517878 188517897 CTCAACATCCTTGCCTTGTC 59 188517938 188519008 GTTATACTCAATGCCTTCGCT 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 3 2 2 81 2 78408017 78409686 GAAGACGACGAAGATTGGGA 60 78409730 78409748 CTGCATCCTCTTCCTCCAC 60 NA Rattus norvegicus 81 Rpf2 ENSRNOG00000000587 ENSRNOT00000000717 1 1 1 80 20 45331687 45332827 CAATAATCTCGTGATAGGTCGT 58 45331628 45331649 AGAGACACGAATTTCTCAATCC 59 NA Rattus norvegicus 81 Setd5 ENSRNOG00000007472 ENSRNOT00000066723 1 1 1 80 4 145065997 145066015 CTCACCCTTTATGCCTGAG 58 145066057 145072226 TTTATCCAGCGCTTCTTACAG 59 NA Rattus norvegicus 81 P2ry2 ENSRNOG00000019283 ENSRNOT00000026115 3 1 1 92 1 166037229 166037247 ATCCTCGTCACACCAAGAG 59 166032745 166032764 TACTATTCCAGGAGTCCAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Suds3 ENSRNOG00000001139 ENSRNOT00000075646 1 1 1 80 12 45206442 45206466 GTACGTTACAGGAATATCAGAAGAG 59 45206504 45207348 GGAAGAGTTCTGCATTCCG 59 NA Rattus norvegicus 81 Triap1 ENSRNOG00000047812 ENSRNOT00000075320 2 1 1 81 12 47031402 47031420 TTTCTCAAAGGAGACGGCT 59 47029932 47031359 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 2 1 1 62 14 21819575 21820860 TGCCAGTGATGAGTTACCTG 60 21819532 21819550 TATCCACCAAATGGAGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Srsf9 ENSRNOG00000001163 ENSRNOT00000001539 2 1 1 83 12 47040636 47042130 TCTTGTTTCAGGGCTTCCT 59 47040571 47040589 TCTGCGTAACAGACATCCC 60 NA Rattus norvegicus 81 LOC100911027 ENSRNOG00000046250 ENSRNOT00000074549 3 1 1 90 1 54730525 54748641 TGCCTGGAGATTGTACTTGG 60 54730454 54730473 CAAACATGACCCATCCTTGC 60 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900,ENSRNOT00000063902 3 2 4 83 13 80431158 80432587 GCTACTCTTAGAGACTCCACTG 60 80431096 80431119 GGGAAATGATCATGAATGAAGAGG 60 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 3 1 1 64 4 10794823 10797179 AAGTGTACATTGCCATGGG 58 10797205 10797225 TCATCACTATCTTTCCGACTC 57 NA DesignNoJunction Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000075504 2 1 3 85 12 22473604 22473626 GCAATACGTGAGCAACCTG 60 22473537 22473556 GGAGAAACGATTCCAGAAGC 59 NA Rattus norvegicus 81 Gpr83 ENSRNOG00000030318 ENSRNOT00000044945 1 1 1 82 8 13369946 13369965 CTTTGCCCAGTACTGTTCTC 59 13370010 13371992 GATGCATGATGACCTGGTG 59 NA Rattus norvegicus 81 Neto1 ENSRNOG00000014006 ENSRNOT00000019384 3 1 1 80 18 83556781 83577384 TTTCAAGAACCTCCCTGTG 57 83577428 83577446 CCCATTGCAGACTAGTGTG 58 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000089980,ENSRNOT00000043799 1 2 2 80 5 140830827 140830845 TTTGGACGGACAATTCGTG 59 140830344 140830783 ATCATCTGACCAAACTGGC 58 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000011998 3 1 10 99 15 32774710 32774731 GAACAATATGCAGATTCTGTCG 58 32775337 32775942 GAATCATGACTCTTGGGCT 57 NA Rattus norvegicus 81 Fuca2 ENSRNOG00000015551 ENSRNOT00000020946 3 1 1 80 1 7672053 7672071 TGAAATGGCCCATCTCTGG 60 7672115 7673405 GGCCCAGTAGTTCTACCTC 59 NA Rattus norvegicus 81 Krtap12-2 ENSRNOG00000042956 ENSRNOT00000067800 3 1 1 104 20 11638333 11638381 TATGTGCCTGCTGTATGCA 60 11638247 11638265 CAAAGAGGACTGGCATGAG 58 NA DesignNoJunction Rattus norvegicus 81 Spty2d1 ENSRNOG00000050806 ENSRNOT00000075006 3 1 1 83 1 103120065 103120083 GTGAAAGGTGTCCAGTCAG 58 103119296 103120019 TTTCTCTTCCAAGGCTTTCC 58 NA Rattus norvegicus 81 Olr1443 ENSRNOG00000046777 ENSRNOT00000047914 3 1 1 60 10 44548132 44548151 AAGACACGTCCCAATATGAG 57 44548172 44548192 GGTAACAACAGAATGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000042100,ENSRNOT00000061303,ENSRNOT00000048137,ENSRNOT00000048353,ENSRNOT00000012129 1 5 5 80 3 2268941 2269102 GAGGACATGATCCACTTCTG 58 2269143 2269163 CATGATGTGGATGACATTTGG 58 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000091945,ENSRNOT00000090039 1 4 6 80 20 3436302 3436796 CGATGACCAGGATTACTTACAC 59 3436243 3436261 TCTGCTTCTCCAATCCGAG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000082523 3 1 6 60 20 3428334 3428352 CCGACTTCTTCTGTGATGG 58 3428292 3428311 TGATCTACACAGCAAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 2 2 2 81 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027269 48027290 CACTGGAATATTGAAGAAGCCC 60 NA Rattus norvegicus 81 Nmrk2 ENSRNOG00000042897 ENSRNOT00000066348 2 1 1 80 7 11385665 11385684 CTTTGATGGTCACGTATGGC 59 11385723 11385908 TCTAAATAGACCACTTCCACTCG 60 NA Rattus norvegicus 81 Tbc1d16 ENSRNOG00000049758 ENSRNOT00000075171 1 1 1 80 10 108266427 108266447 TTCGGACAGATAGGAACAACC 60 108265486 108266386 AATTCAGCAGGATCCTCCTC 59 NA Rattus norvegicus 81 Srrd ENSRNOG00000000662 ENSRNOT00000000826 3 1 1 80 12 50319368 50320390 TCAGTGAGAATGAGGAAGGC 60 50320433 50320451 ATAGAGCTGTCCCACAGTG 59 NA Rattus norvegicus 81 Tspan12 ENSRNOG00000059016 ENSRNOT00000083938 2 1 1 80 4 48879809 48879830 AATGACAAATTACGGCTTACCC 59 48874319 48879768 CCGCAGCACTTAAACTCTC 59 NA Rattus norvegicus 81 Nkg7 ENSRNOG00000017749 ENSRNOT00000023942 3 1 1 87 1 98493552 98493649 CAAGTAGCAGGTTATATCCACG 59 98493486 98493504 ACAGAACCAGGAAGCTCAC 60 NA Rattus norvegicus 81 Rab25 ENSRNOG00000023640 ENSRNOT00000032355 1 1 1 80 2 187904017 187904035 CCTGCTATTCCTGGAGACC 59 187903632 187903976 GCAAAGATCTCTTTGAGGACAG 59 NA Rattus norvegicus 81 Bmp8a ENSRNOG00000030155 ENSRNOT00000045922 3 1 1 83 5 141019931 141033085 CTTCGTCAACATGGTGGAG 59 141019866 141019887 ATCTGGGTTAAGTCAAAGTGGA 60 NA Rattus norvegicus 81 Lcn4 ENSRNOG00000030708 ENSRNOT00000046109 1 1 1 80 3 5168345 5168595 AGGCACACTCTTATATCTGAGG 59 5168636 5168654 ACTGTATTGACCAGGCTCC 59 NA Rattus norvegicus 81 Usp22 ENSRNOG00000032492 ENSRNOT00000050061 2 1 1 80 10 47429999 47430019 CAGTGGTTCAAGTGTGATGAC 60 47429231 47429957 GAAGAGCAGGTACCCTTCG 60 NA Rattus norvegicus 81 Arg2 ENSRNOG00000053811 ENSRNOT00000083433 3 1 1 83 6 102312235 102330146 GGCTTTCTATGTTGGGATGC 59 102330186 102330210 GATTATTGTAGGGATCATCTTTGGG 60 NA Rattus norvegicus 81 Ces2a ENSRNOG00000011330 ENSRNOT00000015451 3 1 1 80 19 62704 62723 CTGAAGACTGCCTGTATCTC 58 61876 62661 GGATCCATACCATCACAGG 57 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934 2 1 2 83 18 55897696 55916080 GAGTCCAGCTCCAGATAGC 59 55897631 55897649 TCTGAGCTGGGTAATGACG 59 NA InUTR Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000088553,ENSRNOT00000010243 1 2 2 80 8 2682190 2682211 CAATTCTAACTGTCCGAGTCTG 59 2682249 2682963 ATAGTACCAGTATGTCTGCCTC 59 NA Rattus norvegicus 81 Lag3 ENSRNOG00000021334 ENSRNOT00000028965 3 1 1 80 4 157425903 157426187 CTGTGGAGAAGACAGTTGC 59 157425841 157425861 TATCTTACTCTGAACCGGAGG 59 NA Rattus norvegicus 81 LOC501282 ENSRNOG00000046883 ENSRNOT00000072870 3 1 1 85 9 10891048 10891069 AAATCCTACCTCTACTTCACAC 57 10891116 10891587 AATGCAGCTTTGGAGTAGG 58 NA Rattus norvegicus 81 LOC102553715 ENSRNOG00000045683 ENSRNOT00000057880 1 1 1 103 10 49002532 49002550 GTTGACTTCTCCATCTCCC 57 49002617 49003004 TAGGACAGTGAGTCACCTG 58 NA Rattus norvegicus 81 rno-mir-29b-2 ENSRNOG00000049256 ENSRNOT00000071880 3 1 1 65 1 38238383 38238401 AAGCTGGTTTCACATGGTG 59 38238429 38238448 ACACTGATTTCAAATGGTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem198 ENSRNOG00000020061 ENSRNOT00000027208 3 1 1 80 9 82674973 82677132 CTACTGCTTCTTTGGTTACCG 59 82677173 82677192 AGGAAGATAACCACTGAGCC 59 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 1 2 2 80 6 125877504 125877523 GCCATCTATGCAACAATTCC 58 125877564 125877662 TTCTGTATTGTGTCGAGACTG 58 NA Rattus norvegicus 81 Mfap2 ENSRNOG00000008257 ENSRNOT00000010993 3 1 1 80 5 159537502 159537520 CCAATACGACCTGGATCCT 59 159537563 159537809 TCTGCGTTCTCTATCTGGTC 59 NA Rattus norvegicus 81 Pnoc ENSRNOG00000014231 ENSRNOT00000019117 2 1 1 81 15 48809569 48818458 GCTTCAACCTGAAGCTGTG 60 48809506 48809524 ATGGCTTTGGTGCAAAGAG 59 NA Rattus norvegicus 81 Setd6 ENSRNOG00000012447 ENSRNOT00000016626 1 1 1 80 19 9763447 9763468 CCTAACAACACAGATGACACAG 59 9763301 9763407 GGTTTCATCCTCTGTTCCCT 60 NA Rattus norvegicus 81 Setd6 ENSRNOG00000012447 ENSRNOT00000016626 3 1 1 80 19 9763577 9764362 CTAGAGTACTCTGCAGAATATCTC 58 9763520 9763541 CCCATATGTGTTGAAGATTTCG 58 NA Rattus norvegicus 81 Alg9 ENSRNOG00000010877 ENSRNOT00000029166 1 1 1 80 8 55214756 55216011 CATCGTCTGCATTCCTTCC 59 55216052 55216073 GTGTCTTGTCCATATACCATCC 58 NA Rattus norvegicus 81 Rn60_13_0873.1 ENSRNOG00000051337 ENSRNOT00000075901 3 1 1 60 13 82366339 82366357 CCGATTACATGGCTTTCCT 58 82366297 82366319 CTGAAGGTGAATCTTGAACTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002768.1 ENSRNOG00000055096 ENSRNOT00000081294 3 1 1 73 1 83818447 83818465 AACAGTGATGCTGAAGCAC 59 83818391 83818410 TTGTCCTTCTGAGGCTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 H1fx ENSRNOG00000027722 ENSRNOT00000033687 2 1 1 72 4 119889833 119889851 CAAGAGAAGGAAGAACCGC 59 119889779 119889797 CTTACGGATCGTCTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbmx2 ENSRNOG00000007371 ENSRNOT00000048922 3 1 1 86 X 135553309 135555310 TGTGTTCTCACAGTATGGAGAG 60 135555354 135555375 CACAGGAAACAGAATCCTTTGG 60 NA Rattus norvegicus 81 AABR07017662.3 ENSRNOG00000052843 ENSRNOT00000040046 1 1 1 77 15 29852631 29852649 TTTCACTGGTGGTCCTGTG 60 29852393 29852411 TGAGTGATTCTGGGCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Rpusd4 ENSRNOG00000011567 ENSRNOT00000015670 1 1 1 103 8 36474697 36474715 ACATCAGCTCCGAGTTCAC 60 36474781 36476303 CAGCAGAAAGTTTCTGAGGG 59 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 3 2 2 81 1 164302575 164302593 GGGAAGATGCAGAAGAAGG 58 164301987 164302530 CCAGATGTTTCTGCAGGTC 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601,ENSRNOT00000010739 1 2 2 80 6 126647159 126647177 GACAAGGAGGTGAAAGCTG 59 126647217 126647837 CTTAAATACTGTCTGGAGGTGAG 58 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 2 1 1 153 6 26602161 26602441 TAGACACTCCGATAACCTGG 58 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ssx2 ENSRNOG00000049427 ENSRNOT00000071047 2 1 1 80 X 709348 709818 GAGGCATGTAAGGCATTCG 59 709860 709880 GATCTTCTCTGAATGGCTGAG 58 NA Rattus norvegicus 81 Rab14 ENSRNOG00000018901 ENSRNOT00000025649 1 1 1 80 3 14382950 14382968 GGTTCAGAGCTGTTACACG 59 14379892 14382909 ATGTACTTCTTCTGGTGATGTC 58 NA Rattus norvegicus 81 Smpd2 ENSRNOG00000000306 ENSRNOT00000000336 3 1 1 81 20 46213866 46213884 TTCTCCAGACACCCAATCC 59 46213696 46213826 AGTCTCCATGATAGAACTTGTAGG 60 NA Rattus norvegicus 81 Rn60_2_2281.4 ENSRNOG00000051107 ENSRNOT00000076959 3 1 1 63 2 208593288 208594252 TCAAGGAGAGGAACAGGGA 60 208594279 208594297 GATGTGCCAAAGTTCCACC 60 NA DesignRelaxed Rattus norvegicus 81 Med17 ENSRNOG00000010496 ENSRNOT00000014435 3 1 1 80 8 13827957 13827979 TCAGATTAAGTCTCAGATCCCTC 59 13827155 13827918 ATAGACAACTGCAAGCTTGG 59 NA Rattus norvegicus 81 Hgs ENSRNOG00000036696 ENSRNOT00000054966 3 1 1 81 10 109651921 109652292 TTAGTGAGCAGTACCAGAACG 60 109652334 109652353 AAAGTGCTGACTGCATTCTG 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000090445 2 1 8 103 3 100803308 100815570 GTCATAAAGTTCCACCAGGTG 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000077703 3 1 8 103 3 100770329 100815568 GCAAAGAAGTTCCACCAGG 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Dpep3 ENSRNOG00000019757 ENSRNOT00000026809 2 1 1 80 19 37951204 37951222 AGATTGACCTCATCCGACG 59 37951054 37951162 GAGTGCTATTCAGACCATCAG 58 NA Rattus norvegicus 81 Hrct1 ENSRNOG00000039336 ENSRNOT00000060282 3 1 1 60 5 59228348 59228366 GCCTAGACTCTTCTACGGC 59 59228390 59228408 GTGATGGTGATGGTGAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693,ENSRNOT00000066634 2 2 2 82 20 46219691 46219712 CGAAGATCCTGTGATAATTCCT 58 46219755 46223703 TTTCACCCTTCAGTTCCCT 59 NA Rattus norvegicus 81 Zfp365 ENSRNOG00000000638 ENSRNOT00000057992 2 1 1 84 20 22063448 22063466 GTGGCTGTGGAAATGATCG 59 22063511 22075305 TGACAACTTCTTCCTCTTTCCT 59 NA Rattus norvegicus 81 Mmp7 ENSRNOG00000010507 ENSRNOT00000014041 2 1 1 80 8 5896517 5896537 TGCAGAATTCTCACTAATGCC 59 5896574 5896682 TCTGTAGTATAGGACACGATTCTG 59 NA Rattus norvegicus 81 LOC100912283 ENSRNOG00000049757 ENSRNOT00000074839 1 1 1 80 10 70655930 70658457 ATAAACACGGCGTGAAGAC 59 70658501 70658519 AATCGTCCTCCAGTTCCTC 59 NA Rattus norvegicus 81 Mir411 ENSRNOG00000035574 ENSRNOT00000053697 3 1 1 60 6 133858868 133858890 GTATAGCGTACGCTTTATCTGTG 60 133858907 133858928 ATTTGATACTGAGGGTTAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83g ENSRNOG00000027924 ENSRNOT00000027312 2 1 1 80 10 47972171 47972195 GATGAGAGTAACGTGAAGTATTTCC 60 47972230 47978374 TACCCTAAGATTCTTGAGGTGC 60 NA Rattus norvegicus 81 Dicer1 ENSRNOG00000010711 ENSRNOT00000014405 1 1 1 80 6 128408651 128408769 CAAACCCATACCTCAGATCC 58 128408590 128408608 GACTTCTTCAGCTCGATGG 58 NA Rattus norvegicus 81 Orai2 ENSRNOG00000001427 ENSRNOT00000001938 1 1 1 112 12 23553826 23553844 GAGGAAGCTGTACCTGAGC 60 23560988 23561006 GGTACTTGGTCTCCAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000019853 3 2 4 88 7 117709548 117711085 CTACACAGAGGTTCAGTTCC 58 117709479 117709497 GGTTCAGTACTGTGAACCG 58 NA Rattus norvegicus 81 Olr441 ENSRNOG00000034115 ENSRNOT00000048581 3 1 1 60 3 72808373 72808394 ACTTCTATCTTCTGGGATTTGG 58 72808334 72808354 AACACGATGAAGAGGATACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thegl ENSRNOG00000002085 ENSRNOT00000002860 3 1 1 90 14 33401979 33405181 GAACTCCAGATAGGAGGCTG 59 33401908 33401926 ATTCTCTTGCTCGACGGAG 60 NA Rattus norvegicus 81 LOC689396 ENSRNOG00000032418 ENSRNOT00000041429 3 1 1 109 X 151745543 151752813 CAATGGACAGATATGACTATGTGG 59 151752881 151752899 CCCTGGGTCTATGTTGTCG 60 NA InUTR Rattus norvegicus 81 Sgpp2 ENSRNOG00000037695 ENSRNOT00000018882 3 1 1 81 9 84284949 84287713 ATGGACAGGTACCAGTACC 58 84287758 84287776 AGAGTCTGCTGAGACTCAC 59 NA Rattus norvegicus 81 Chmp6 ENSRNOG00000004014 ENSRNOT00000005379 3 1 1 80 10 109075900 109075918 ACGCAGATCGAGATGAAGG 60 109075962 109076545 TATGGACATCACCTGGTGC 60 NA Rattus norvegicus 81 Ahsp ENSRNOG00000020165 ENSRNOT00000027297 2 1 1 80 1 199720421 199720669 GATCAGCAGGTCTTTGATGAC 59 199720709 199720729 GATGTACAAGTTCACCCAGTC 59 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000058437 ENSRNOT00000089436 1 1 1 154 17 44758672 44758690 GAGGGACAACAAGAAGACG 58 44758808 44758826 TCTCTGTCTTCTTGGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051266.1 ENSRNOG00000050908 ENSRNOT00000072025 1 1 1 88 3 4404473 4404491 TCTCAGAAGCCAGGAATGG 59 4401749 4402252 CATCTGTCCTAGTGGGTGTC 60 NA Rattus norvegicus 81 Nipal4 ENSRNOG00000006255 ENSRNOT00000008544 1 1 1 88 10 31244511 31244529 GTGATGGTCATACATGCCC 58 31243974 31244460 AATACGATGAACCCTGTGTC 58 NA Rattus norvegicus 81 RGD1311805 ENSRNOG00000012597 ENSRNOT00000017045 1 1 1 80 18 3615727 3615747 CACCCAAGTTTGTGATAGCTG 60 3615788 3616027 GTAAGTAATGCTGCACTGGG 59 NA Rattus norvegicus 81 Tbp ENSRNOG00000001489 ENSRNOT00000002038 3 1 1 81 1 57504898 57505485 GCCAAGAGTGAAGAACAATCC 60 57505528 57505546 AGAACTTAGCTGGGAAGCC 59 NA Rattus norvegicus 81 Htr1d ENSRNOG00000012038 ENSRNOT00000016046 3 1 1 60 5 154800388 154800408 TTCGTACTTACCACCATCCTG 60 154800429 154800448 CAATGAGATAGTTGGCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnmt ENSRNOG00000016698 ENSRNOT00000022410 1 1 1 80 18 64102783 64102803 CCGAGTACATGAAGAACAGTC 59 64103641 64104765 AGTAAATGCTTGTAGCTTCCC 58 NA Rattus norvegicus 81 Olr1096 ENSRNOG00000014386 ENSRNOT00000019271 3 1 1 66 4 1842183 1842204 ACCATACCCAAGATGGTATCAG 60 1842357 1842375 CTGCACAACCTTCAAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 AABR07060952.1 ENSRNOG00000061169 ENSRNOT00000058282 3 1 1 80 4 101639708 101640093 TGGATCCAGGAAACTAGAGG 58 101640135 101640154 GGAGACTGATTGTCCAATGG 58 NA Rattus norvegicus 81 Arid3c ENSRNOG00000013416 ENSRNOT00000046589 3 1 1 91 5 58113299 58113318 GATGTCCCAATTCACCATCC 59 58111549 58113245 GTCGAGTTCATACAGCTGC 59 NA Rattus norvegicus 81 Pcf11 ENSRNOG00000009891 ENSRNOT00000013552 1 1 1 80 1 157487815 157488138 AATAAATCGCCTGATGAGCC 59 157487754 157487773 ATCAGGTACAATGGGAGGAG 59 NA Rattus norvegicus 81 Pcf11 ENSRNOG00000009891 ENSRNOT00000013552 2 1 1 80 1 157487815 157488137 ATAAATCGCCTGATGAGCC 58 157487753 157487772 TATCAGGTACAATGGGAGGA 57 NA Rattus norvegicus 81 Kbtbd3 ENSRNOG00000022252 ENSRNOT00000034503 3 1 1 166 8 1459619 1459639 TTGCATCAGAAGATCATGGAC 59 1459764 1472225 GTTTACTTCAAACATAGCCCTG 58 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 1 2 2 80 5 167297623 167298213 CAAGGACTACCCAGTGGTG 60 167298256 167298275 GCAGTAGCTGTGAACTTCTG 59 NA Rattus norvegicus 81 Trim69 ENSRNOG00000017157 ENSRNOT00000023209 2 1 1 80 3 114114653 114114671 TTCAGACAACCCTGAAGGA 58 114114712 114117457 GTATCTTGTTGTCCTTGTAAGC 58 NA Rattus norvegicus 81 Smr3a ENSRNOG00000001949 ENSRNOT00000002669 3 1 1 105 14 21703819 21707236 ATGCTTCCTGTCTGGTGAG 59 21703732 21703750 AATTCCTGGACCAAAGGGA 59 NA Rattus norvegicus 81 Phf21b ENSRNOG00000013067 ENSRNOT00000017906 1 1 1 80 7 125717331 125717349 AAAGAAAGACGAGGGTGTG 58 125717391 125717593 TCTTCTTTCACTGTCTTGTGG 58 NA Rattus norvegicus 81 Tet2 ENSRNOG00000023579 ENSRNOT00000046775 3 1 1 80 2 238735560 238736359 GCTAAATGGGTGTATCGGAG 58 238735499 238735517 GTCACATGTATGCTTGGCT 58 NA Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763,ENSRNOT00000076921 3 2 2 78 13 82595876 82595894 AGCAGAAGTCTGCAGTACC 59 82593136 82593154 TTCTGTACAGGCAACTGGA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017623.1 ENSRNOG00000046052 ENSRNOT00000075484 1 1 1 80 15 29345550 29345742 AGATTTGCTGGGTGAGAGG 59 29345488 29345506 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000021768 3 1 2 186 18 79841867 79841885 CATTCCAAAGGACTTCGCC 59 79846504 79848369 ACACTCAAACACCACTGTG 58 NA Rattus norvegicus 81 Gen1 ENSRNOG00000004667 ENSRNOT00000006470 1 1 1 80 6 36923225 36923245 CTACTCTGTTCCACAATCAGC 59 36921996 36923186 TCATGATCCTTAGGAGAACCTG 59 NA Rattus norvegicus 81 Itgbl1 ENSRNOG00000004516 ENSRNOT00000006264 3 1 1 80 15 110248294 110265596 GATGATTTCTGTTCAGGTCACG 60 110265635 110265655 CTCACACTTCTTCCCATACCA 60 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214,ENSRNOT00000038264 1 2 2 80 13 103305505 103305523 AGTGGAGCATGTGAAAGGT 59 103305567 103307554 ACCACACTCTCAGAAACCC 59 NA Rattus norvegicus 81 Nrde2 ENSRNOG00000004004 ENSRNOT00000005369 2 1 1 80 6 124157833 124157854 TTCAGGACAGATAAGAAACCAG 58 124156050 124157795 CCTCTTGTACCTTGCTATATCC 58 NA Rattus norvegicus 81 AABR07017868.1 ENSRNOG00000050053 ENSRNOT00000071627 1 1 1 95 15 31948068 31948204 CTCCTCATCCTCACAAGGG 59 31948257 31948281 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Fkbp4 ENSRNOG00000006444 ENSRNOT00000008737 3 1 1 80 4 161753935 161754629 TTGTATTTGAGGTGGAGCTG 58 161753874 161753892 GTATTCTGCGGATGATCCC 58 NA Rattus norvegicus 81 Slc22a17 ENSRNOG00000016414 ENSRNOT00000021851 1 1 1 80 15 33571294 33571481 CTTCACCAACTTTATCGCCC 59 33571233 33571253 AAGTAGAAGTCTGATGGGCTC 59 NA Rattus norvegicus 81 Timm8a2 ENSRNOG00000013835 ENSRNOT00000018486 2 1 1 81 15 108453406 108453424 GCCAAACCGTTCTTCTCAC 60 108453467 108456293 CCTAAGGAACAGGGATCTTCC 60 NA InUTR Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 1 3 3 80 20 3731249 3731429 AGTCTATGAAAGGCTCCCTG 59 3731188 3731206 AAATAGCGTCGTCTCTGGA 59 NA Rattus norvegicus 81 Stath ENSRNOG00000054677 ENSRNOT00000085234 3 1 1 84 14 21958273 21959058 GGTCTCCATGATTACTGCTG 58 21957139 21957158 CACATATCGGCGATAACGTC 59 NA Rattus norvegicus 81 Fbxl3 ENSRNOG00000059334 ENSRNOT00000089876 2 1 1 80 15 93656809 93660049 TATGGATCTACCAAAGTCTCAC 57 93656750 93656769 ATCTTAAGTGAGGACAGGGA 58 NA Rattus norvegicus 81 Svip ENSRNOG00000037137 ENSRNOT00000056024 3 1 1 101 1 107371452 107371470 GATATCCAGTCGGTGGAGG 59 107368948 107371389 TGACACTGTCCATCTAAGTCC 59 NA Rattus norvegicus 81 Mkrn2 ENSRNOG00000009176 ENSRNOT00000013146 2 1 1 84 4 147530828 147531011 CTGTGAGGTTCTTTAACTCAGTG 59 147531055 147531073 TCCACATCATCAGTGCTGG 60 NA Rattus norvegicus 81 Serpina3m ENSRNOG00000009921 ENSRNOT00000013175 3 1 1 80 6 127813479 127813497 AGATCCAGGAACTGGTCTC 58 127811660 127813437 TCCATTTGCCTCTAAAGAGGA 59 NA Rattus norvegicus 81 Vom1r93 ENSRNOG00000055542 ENSRNOT00000084689 2 1 1 60 4 121778905 121778923 TCTTCAAAGGCATCTCCAG 57 121778946 121778965 AGAAACTCATAAGCAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr836 ENSRNOG00000033862 ENSRNOT00000050490 1 1 1 60 5 59265796 59265815 AGACATCTTTAGCAATGCGG 59 59265755 59265774 CAGGTGAAGTGGTTGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngdn ENSRNOG00000018069 ENSRNOT00000024337 1 1 1 80 15 33682226 33682244 GTCCTTTGGACCAGAAGCT 60 33682288 33682383 GGTCATTCTCACTGAGGCT 59 NA Rattus norvegicus 81 Ccdc178 ENSRNOG00000022156 ENSRNOT00000050933 3 1 1 81 18 13018770 13020372 ACTTGTAAAGTTGCAGGAAGAG 59 13018710 13018730 TCTTAAGATGTGGTCGAACAC 58 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337,ENSRNOT00000019748 1 2 3 80 2 144887911 144898660 AGAACCTGCTGGTGTATGAG 60 144898703 144898721 CATCGACAATTGTGGCCAG 60 NA Rattus norvegicus 81 Hrh1 ENSRNOG00000007420 ENSRNOT00000009775 3 1 1 60 4 146456718 146456738 CTTCATGGTCATTGCCTTCTG 60 146456759 146456778 AATGGTGAACATATGCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex101 ENSRNOG00000020057 ENSRNOT00000027202 1 1 1 80 1 81531771 81532220 TTAAAGCAGAAGGAACCAAGAC 59 81531712 81531732 GAACGAATGTCATCGTCTCTG 59 NA Rattus norvegicus 81 LOC100911147 ENSRNOG00000042719 ENSRNOT00000045085 2 1 1 80 1 71629618 71629897 TGGCTTTCAAGATCAGTACTC 58 71629936 71629957 AAATGGGAATGACCAAGTTAGG 59 NA Rattus norvegicus 81 Pcgf6 ENSRNOG00000020250 ENSRNOT00000027450 1 1 1 80 1 266820885 266820904 TCAGGAGAAGCAACTATTGG 57 266815635 266820843 GATGTCTACCTGACAAGCTG 58 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 2 2 2 107 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362991 81363009 TTGAGTGAGACACAGAGGC 59 NA Rattus norvegicus 81 LOC100910670 ENSRNOG00000047359 ENSRNOT00000073194 2 1 1 60 1 169669835 169669855 GCTTTGCTCAGATGTATACCA 58 169669875 169669895 CAGACAAAGATACCTGACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pih1d1 ENSRNOG00000020634 ENSRNOT00000028022 3 1 1 81 1 101155227 101155334 TACCTGAGGATGCAGAACAG 59 101155377 101155396 GGCCATACTTGTCTTCAAGG 59 NA Rattus norvegicus 81 Clmp ENSRNOG00000053239 ENSRNOT00000080288 3 1 1 80 8 44930808 44930826 TGAGAAAGACACCCTGGAC 59 44930866 44962688 CGACTGGAATACGTAATAACCAC 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000032835 ENSRNOT00000040815 2 1 1 60 18 6587042 6587061 TCAGAATCAAGCGATTCCTG 58 6587001 6587021 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbd ENSRNOG00000004687 ENSRNOT00000006200 1 1 1 60 3 142751148 142751167 CCTCAGCTCTGTTCTAACAC 58 142751107 142751126 ACTCATAGCCATCATAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan18 ENSRNOG00000008758 ENSRNOT00000011650 3 1 1 80 3 82100851 82100870 GTGATCCTCAACACCTTCGA 60 82099570 82100809 GAGGAAGAGCTCAATAGCCA 59 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102,ENSRNOT00000083941 1 2 2 117 15 33722559 33722813 TCTTTCAATTCAGGCCCTG 58 33722460 33722478 CAGGTCTCTGAGGTAAGGG 59 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 1 2 2 80 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044949 78044968 CTCGATGAAGAAGTTGTCCT 57 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 2 2 2 80 1 78040220 78044909 ATGACGAGACCATGAAGACTC 60 78044950 78044969 GCTCGATGAAGAAGTTGTCC 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 2 2 2 80 20 28046425 28047181 TGGTTCAGAAATTGCCTGTC 59 28047221 28047242 CACTGTAGTCTTCAAGTTCCTG 59 NA Rattus norvegicus 81 Sgta ENSRNOG00000019891 ENSRNOT00000026960 3 1 1 85 7 11530179 11530197 ATGCCATCATCCAGTTCCT 59 11530246 11531492 CTGGATGGCAACCTCTAGG 60 NA Rattus norvegicus 81 Serac1 ENSRNOG00000017889 ENSRNOT00000060527 3 1 1 80 1 46959178 46960496 AGTAAAGCACTCAGAGATACCT 59 46959119 46959137 TGGTAGAGTCTCTGCAGGA 59 NA Rattus norvegicus 81 AC136661.1 ENSRNOG00000037380 ENSRNOT00000047772 3 1 1 87 1 91747009 91747028 AAGACCTACAGCTACCTGAC 59 91747082 91747115 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Nmt2 ENSRNOG00000026248 ENSRNOT00000030228 1 1 1 80 17 78933634 78933737 ATGCTGAAGTGCTCAAGGA 59 78933572 78933593 AGTCAAAGCGGAACATATTGTC 59 NA Rattus norvegicus 81 Znhit1 ENSRNOG00000001418 ENSRNOT00000040015,ENSRNOT00000077293 2 2 2 127 12 22729840 22729860 CAAGAGACTACCTCAGTTCGA 59 22732233 22732378 CACTCAGGTTCTGCTCCTC 60 NA Rattus norvegicus 81 Pdgfra ENSRNOG00000002244 ENSRNOT00000003077 2 1 1 80 14 35562241 35562259 GAAGGACAACTTGACCCTG 58 35560757 35562198 CTTTGATACCTCGTCTCCTG 58 NA Rattus norvegicus 81 RT1-N3 ENSRNOG00000000795 ENSRNOT00000001035 3 1 1 80 20 3169651 3170158 AGAAGGCAGGTGAAAGAGG 59 3170322 3170343 CCACAACAATCTTGCTAGAGTC 59 NA Rattus norvegicus 81 Tldc2 ENSRNOG00000006395 ENSRNOT00000008386 3 1 1 80 3 153200102 153200122 CTATACCGACAAATGGAGGGT 59 153200164 153202673 GAAGGCACCAAACATCTGG 59 NA Rattus norvegicus 81 Gtf2f1 ENSRNOG00000047134 ENSRNOT00000073683 2 1 1 81 9 10036978 10036997 GTACAATTTCACACCGCTGG 60 10037041 10038478 GACCTTGTTCCTCCTCTCC 59 NA Rattus norvegicus 81 AABR07049408.1 ENSRNOG00000023286 ENSRNOT00000057697 2 1 1 80 5 120952049 120957750 CACAGCAATTCAGTGTCCA 58 120960218 120960242 TCAGGATCTGTATGACAGTATAGAC 59 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576,ENSRNOT00000082855 2 2 2 80 11 87063279 87063300 TTTATCCTGGACTATGGTGTGG 60 87063341 87066626 TTCAGAGGTGCATGACTCC 59 NA Rattus norvegicus 81 Clptm1 ENSRNOG00000018255 ENSRNOT00000024779 3 1 1 80 1 80550781 80551062 TATGATGACATGGCGTTCC 58 80550719 80550737 GTACAGAAGGCTGTAGACG 57 NA Rattus norvegicus 81 Bcl7b ENSRNOG00000032705 ENSRNOT00000041798 3 1 1 82 12 24544743 24544907 CCAATAGAGACCCAGACCAC 60 24544680 24544698 ACTACAGGTTGGTCCACAC 59 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000074621 2 1 2 60 6 129425158 129425177 GTGGAAGTGGCTATGTTCTG 59 129425199 129425978 TGAACATTTCAATGCAGGTG 57 NA DesignRelaxed Rattus norvegicus 81 Tcf20 ENSRNOG00000009585 ENSRNOT00000012699 1 1 1 80 7 123709388 123709407 TGGAATCTACCTGGTCTGTG 59 123685148 123709346 CAGTGGGAGCATTTCATCTC 59 NA Rattus norvegicus 81 Igfbp7 ENSRNOG00000002050 ENSRNOT00000002809 1 1 1 98 14 33067484 33067502 AGAACTCTTGCCTGGTGAC 60 33067562 33068158 CTTAGAGGAGATACCAGCACC 60 NA Rattus norvegicus 81 Olr744 ENSRNOG00000028267 ENSRNOT00000032617 1 1 1 60 3 79164839 79164862 GAACCCTATCATCTATACACTGAG 58 79164802 79164820 CCACAACTTTCTCACAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem81 ENSRNOG00000028752 ENSRNOT00000035335 3 1 1 111 13 49277754 49277772 TTACACTAGCCAGGTCCTG 58 49277847 49278664 TTAAACCCACAGGCTTCCT 59 NA InUTR Rattus norvegicus 81 Akap14 ENSRNOG00000006899 ENSRNOT00000009123 2 1 1 81 X 123783572 123783593 AGAGGATGAATGAGATAGCTCG 59 123783421 123783531 GGATTTCTGGCTTCTTCCAC 59 NA Rattus norvegicus 81 Olr16 ENSRNOG00000031741 ENSRNOT00000052199 2 1 1 60 1 149859321 149859341 ATCACTCTGGATCTGAAACTC 57 149859281 149859300 ACAGGGACAGATTCTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr444 ENSRNOG00000053361 ENSRNOT00000091920 3 1 1 60 3 72990681 72990699 GGCAACTGAATGCTTTCTC 57 72990722 72990741 CTTACAGATGGCTGCATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf10 ENSRNOG00000061312 ENSRNOT00000085273 1 1 1 80 1 56961649 56962523 GCACACTAGGTTTAACAGCA 59 56961588 56961606 ATTCAGCGTGTTTAGCTGG 59 NA Rattus norvegicus 81 Htra1 ENSRNOG00000020533 ENSRNOT00000027860 2 1 1 80 1 201523467 201523848 TATCGCAAGCTTCCTTTCTC 58 201523891 201523909 AATCAGTCCATCCTCCGAC 59 NA Rattus norvegicus 81 Cep135 ENSRNOG00000002153 ENSRNOT00000032156 2 1 1 80 14 34060578 34061410 CTCAGAAAGCAAACTAACTACCC 60 34060520 34060541 TCATAATCTGTCTGCAACTGTG 59 NA Rattus norvegicus 81 Rsph4a ENSRNOG00000047471 ENSRNOT00000064063 3 1 1 80 20 33958696 33958714 GCCTGACTACGTAGAGCAG 60 33958752 33959480 GAGGGTATATTCTGAATCTCTAGGT 59 NA Rattus norvegicus 81 AABR07060979.1 ENSRNOG00000030177 ENSRNOT00000048263 3 1 1 86 4 102124173 102124572 TCTGGATCCAGGAAACCAG 59 102124105 102124123 AGATGGAGACTGACTGTCC 58 NA Rattus norvegicus 81 LOC100911932 ENSRNOG00000050278 ENSRNOT00000074361 2 1 1 60 1 220363054 220363073 GGTGGCTTTGAGTGTTACTG 59 220363093 220363114 TACAACTGATACCATCTGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan32 ENSRNOG00000026039 ENSRNOT00000054863 2 1 1 80 1 216192652 216192674 GGAGACCACTTTACTGTAATTGG 59 216192712 216193579 CACATAGAAAGCCCAATAGCG 60 NA Rattus norvegicus 81 Sema3g ENSRNOG00000018952 ENSRNOT00000025656 2 1 1 80 16 7307482 7307665 GAGCCTCCTACATGATCCC 59 7307706 7307727 AAGTACACTTTGTCATCATCCC 59 NA Rattus norvegicus 81 LOC100125364 ENSRNOG00000015597 ENSRNOT00000020889 3 1 1 275 1 56949712 56949730 GACTACACTACTTCCGGGC 60 56950151 56950169 TTACCAGGATCACCACCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07051533.1 ENSRNOG00000038274 ENSRNOT00000045492 1 1 1 60 3 16495785 16495804 GTCTTCATATTCCTGCTGCT 58 16496011 16496029 ACTGGGTCATCACAGTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000090417 3 1 2 105 1 78818854 78818872 AGACATTCAGAGGTGGTGC 60 78818941 78821692 GTTGGACATGGCTTGTCAC 60 NA InUTR Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627,ENSRNOT00000045766,ENSRNOT00000037974 2 3 3 80 9 73399548 73416489 GAAACAGCAGAGGAAGTGTC 59 73416530 73416550 CTCTTGTTCACCTTTCAGGAC 59 NA Rattus norvegicus 81 LOC100912327 ENSRNOG00000046038 ENSRNOT00000072957 1 1 1 60 5 69170882 69170902 GCAAAGAGGTGTATGTATCCA 58 69170842 69170862 ACTGAATTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912327 ENSRNOG00000046038 ENSRNOT00000072957 2 1 1 60 5 69171124 69171142 CGCCCATGTACTTCTTCCT 60 69171082 69171105 GAAGATGTTGTGTAGCAGATATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar4 ENSRNOG00000021763 ENSRNOT00000034563 2 1 1 107 1 256786639 256786657 GCTGCTGGCTTTCATATGG 59 256786728 256796425 ATCGGAATTTCCTGGTCCC 60 NA Rattus norvegicus 81 Jsrp1 ENSRNOG00000032951 ENSRNOT00000044417 1 1 1 107 7 11771179 11771404 CAAGACTCGAGGGACATCC 60 11772464 11772482 TTCTCCGTCTTCTTGAGCC 59 NA Rattus norvegicus 81 Hspb1 ENSRNOG00000023546 ENSRNOT00000031555 2 1 1 119 12 23839696 23839825 GAAATACACGCTCCCTCCA 60 23839595 23839613 GTGATCTCCGCTGATTGTG 59 NA Rattus norvegicus 81 Vom2r69 ENSRNOG00000040210 ENSRNOT00000039900 1 1 1 80 14 1016574 1016593 TTTCCTTGTTTCCCACAGAG 58 1016635 1018823 GGAAGGAACTGATGTTCCTC 58 NA Rattus norvegicus 81 Fam184a ENSRNOG00000026407 ENSRNOT00000000475 1 1 1 80 20 34991247 34991265 ACACCACATGGCTATCGAG 60 34983237 34991205 TGTTGTTCTTCCAATTCCGTC 59 NA Rattus norvegicus 81 Th ENSRNOG00000020410 ENSRNOT00000027682 2 1 1 80 1 216074304 216074325 CTACCAAGATCAAACCTACCAG 58 216073440 216074264 GCATAGTTCCTGAGCTTGTC 59 NA Rattus norvegicus 81 RGD1561465 ENSRNOG00000048439 ENSRNOT00000075506 2 1 1 60 5 150994753 150994773 CAACAACATCAAGAACACGTC 58 150994713 150994731 AACACCTCGAGTCACAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 1 2 2 80 13 53165293 53165314 TTCTTCTAGTTCTGACTTCACC 58 53160493 53161470 GAAGACCTTCTAATTCCTCCTG 58 NA Rattus norvegicus 81 Ankzf1 ENSRNOG00000019052 ENSRNOT00000032419 3 1 1 80 9 82397102 82397320 CATGCTCTACAAGGATGTTCG 59 82397361 82397380 AGCAGTATTGTTTCTGCCTC 58 NA Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000077580 3 1 3 221 3 147487141 147487159 CACTTCCCTTTCCTCTGGG 60 147478072 147478091 GATACAGGCACAAAGTTGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 2 2 2 80 10 37175559 37178248 CTTCAGAGTACATGTTACGACC 59 37175500 37175520 CAGTTTCTATTGCGTTGTGAG 58 NA Rattus norvegicus 81 Wbscr22 ENSRNOG00000033700 ENSRNOT00000044449 1 1 1 80 12 24677374 24677858 CCAAAGCAAAGAAGTTCTACCT 59 24678157 24678176 CTTCCTGACTTTCAGTCAGC 59 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531,ENSRNOT00000081244 2 2 2 80 4 86430372 86430392 GACTGAGAAGATTGTGAGTCC 58 86427663 86430331 CTGTTCAAACTTGATCGCCT 59 NA Rattus norvegicus 81 Pou5f1 ENSRNOG00000046487 ENSRNOT00000084526 2 1 1 80 20 3748656 3748883 GGCGTTCTCTTTGGAAAGG 59 3748594 3748614 ACACATGTTCTTAAGGCTGAG 58 NA Rattus norvegicus 81 Slc35f5 ENSRNOG00000003403 ENSRNOT00000004581 2 1 1 80 13 41892371 41898176 GTAGTTCTTTGAGTGAACCTCTG 59 41898215 41898234 CAATGTTTGTGCTCTCAAGC 58 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050808 ENSRNOT00000073056 3 1 1 62 15 29728629 29728744 GGGATAAACTTTCTCCTGAGAG 58 29728588 29728607 GACATGAGCATCAGGTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100360645 ENSRNOG00000042271 ENSRNOT00000066885 2 1 1 80 10 48881062 48881080 TGCAGATTCTCGTGAAGAC 58 48881124 48881143 CCTCACTCACTTTCATGGT 57 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052,ENSRNOT00000075041 2 2 2 84 10 109965700 109965818 CTGGACGGAAATGGTTCTG 59 109965634 109965653 GAAGAGAAGGTGGAAAGCAG 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000080462 1 1 3 81 5 159961492 159961510 TCTGCAAGAACTCTGGAGG 59 159960720 159960738 TCACAGCTCTTTCCTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07051678.1 ENSRNOG00000048541 ENSRNOT00000074445 3 1 1 85 3 19174315 19174333 GAGAAGGTCACCATCACCT 59 19174382 19174411 ATCCAGGGTTTAGGGTTCG 59 NA Rattus norvegicus 81 Dhrs4 ENSRNOG00000018239 ENSRNOT00000024782 1 1 1 80 15 34165240 34166559 CATGCAAATTAGAAGGCTAGG 57 34166599 34166619 ATGTAACTGGCATCTTCAGAG 58 NA Rattus norvegicus 81 Dhrs4 ENSRNOG00000018239 ENSRNOT00000024782 2 1 1 80 15 34156856 34156874 AGGGACTGAGTGTTACTGG 58 34156917 34161464 GCTTCAGAGCCATGTTTACC 59 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000058298 ENSRNOT00000088867 3 1 1 60 4 1431101 1431121 ATTAGCCTCAATCCTCACCTG 60 1431142 1431161 TGAAGGAGAGGTTGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tln1 ENSRNOG00000016630 ENSRNOT00000022400 2 1 1 80 5 59040204 59040307 TGGTAACCCTAAGCAAGCA 59 59040142 59040162 AGGTCTTCTACAGCTTCTGTC 59 NA Rattus norvegicus 81 Wdr25 ENSRNOG00000004733 ENSRNOT00000006281 2 1 1 84 6 132807011 132807029 AACAGCATTCAGTGGTGTC 58 132807077 132887300 CATTCCACACCTTGAAGGT 58 NA Rattus norvegicus 81 AC098125.1 ENSRNOG00000012898 ENSRNOT00000017200 1 1 1 93 1 229835048 229835070 GCATTCATACTTGGGACTGAC 59 229835124 229835143 CCAGGTTCCCAATTAGTGTG 59 NA Rattus norvegicus 81 Zmat3 ENSRNOG00000010119 ENSRNOT00000013858 1 1 1 80 2 118721740 118723807 CCAGAGCAATTCAGGTCCT 59 118721678 118721696 CTTGGAGTAACGCACATGG 59 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838,ENSRNOT00000018097 3 2 2 103 9 73940551 73943411 CTAGCAATGAAGAGATGAATGC 58 73940469 73940489 GAAATCTTCATAGCCTCCCTG 58 NA Rattus norvegicus 81 Dok5 ENSRNOG00000013196 ENSRNOT00000017654 1 1 1 80 3 168438313 168438454 GCTTGTGAATCAGATCTTGAGG 60 168438493 168438513 GATGTCATTGATTCTGGTCCC 59 NA Rattus norvegicus 81 Cpne6 ENSRNOG00000018399 ENSRNOT00000024978 1 1 1 80 15 34189775 34189934 CACTATCACGATCGTGGCT 60 34189978 34189996 TTATCCAGCTTGTGGGCTC 60 NA Rattus norvegicus 81 Slc35d1 ENSRNOG00000022967 ENSRNOT00000032126 3 1 1 80 5 122702513 122717624 GCCTAAATATCAGTATTGCTGG 57 122702454 122702472 TCTCTGACTGTTTGCTCAG 57 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 1 2 2 80 5 50125103 50125543 CTGGTTTGTTATCTTCCTTGC 58 50125043 50125063 CCTTTCATGATGTTGTCTGTG 58 NA Rattus norvegicus 81 Olr14 ENSRNOG00000050901 ENSRNOT00000048861 2 1 1 60 1 149632672 149632693 CTGACTTCCATGTCTTATGACC 59 149632633 149632651 TGGCATCATAGTTGAGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtmr11 ENSRNOG00000021176 ENSRNOT00000056262 3 1 1 80 2 198306145 198306246 AAGACATCAGAGCAGTGGA 58 198306290 198306308 TAGGCATCTCATCCATGGT 58 NA Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980,ENSRNOT00000081254 1 2 2 99 20 25990832 25990853 CGACCTTTGAACAATACAAAGG 58 25991236 25991256 CATAGTCAGTAAGACAGTGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017769.1 ENSRNOG00000046681 ENSRNOT00000071566 2 1 1 93 15 30862518 30862682 TCCTAATGCTCCGAAGGAG 59 30862739 30862757 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 1 1 1 91 8 76450875 76452409 AGCCAAGAAGGTATCAAAGAG 58 76450804 76450822 AACCTCCTCCATGAAACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Xpnpep2 ENSRNOG00000004009 ENSRNOT00000005604 3 1 1 80 X 134965238 134968276 CAAAGACCAAGTACCCAGG 58 134968319 134968338 TGACATCAATGAGGTTTCGG 58 NA Rattus norvegicus 81 Dhx38 ENSRNOG00000014619 ENSRNOT00000019810 3 1 1 80 19 42113475 42113495 TAAGGATGACCAGAAGGATGC 60 42113537 42113864 GATCGGTAGTGCCTGTCTC 60 NA Rattus norvegicus 81 LOC686442 ENSRNOG00000016952 ENSRNOT00000022747 3 1 1 149 7 12171234 12171252 CTCAGCAGATTTCTAGGCC 58 12174386 12174404 CTTGCCATTGATGTACGGC 60 NA DesignNoJunction Rattus norvegicus 81 Sco1 ENSRNOG00000028699 ENSRNOT00000044116 2 1 1 83 10 53602515 53602533 ATTGATGGAGTGGCCAGAG 60 53602575 53607626 TGTATGATCCACTATGTAGTCCTC 59 NA Rattus norvegicus 81 Dis3 ENSRNOG00000009125 ENSRNOT00000037588 1 1 1 80 15 83469385 83469553 CTTCTCCTATCAGAAGATATGCAG 59 83469328 83469348 CTGGATAAGTACAATCAGCCC 58 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530,ENSRNOT00000080068 1 2 2 106 12 22973725 22974961 CAAAGCCATCTGGTGAACC 59 22978249 22978267 CTCTGCCAGGATCTTCAGG 60 NA Rattus norvegicus 81 Olr1581 ENSRNOG00000046418 ENSRNOT00000045565 2 1 1 60 13 91693322 91693343 TATTCTCTGGTCATCATCCCAC 60 91693283 91693302 AGATGGATTGGCTAAGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026252 2 1 4 99 1 81126012 81126030 TTTCGGAACCTGCTCTCAG 60 81124240 81124918 TGTTCATTCCTGAACCTTGC 59 NA Rattus norvegicus 81 Isg15 ENSRNOG00000021802 ENSRNOT00000039263 2 1 1 149 5 173626165 173626185 CCACAGCTCAGACTTTAAGAG 59 173625411 173626054 TTAGGTTCCAGGTCATGGC 59 NA InUTR Rattus norvegicus 81 Zfp579 ENSRNOG00000016608 ENSRNOT00000022349 3 1 1 212 1 72399208 72399226 GCAGGGAAGGAAGAAAGGA 59 72400430 72400448 GTAAGGGAAGCGGAAGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tph2 ENSRNOG00000003880 ENSRNOT00000005157 3 1 1 80 7 58143962 58143983 TCTCTGAGTTAGACAGATGCTC 59 58139442 58143921 TGTCCTTGAATCCTGGGTG 59 NA Rattus norvegicus 81 Slain2 ENSRNOG00000002271 ENSRNOT00000003087 1 1 1 80 14 37812058 37819466 TTCAGCCACTTCTCAAAGG 58 37811996 37812016 TTTGTAGATGGAGTTGGAAGC 58 NA Rattus norvegicus 81 Ddx21 ENSRNOG00000043099 ENSRNOT00000068184 2 1 1 80 20 32225423 32225442 AAGACTTCAGTGACATCACC 58 32224977 32225380 TTCGTTCGATTTGACCACC 59 NA Rattus norvegicus 81 AABR07051583.1 ENSRNOG00000050066 ENSRNOT00000050825 2 1 1 82 3 17546607 17546992 GATTCTGGGAACCAATGGTG 59 17547037 17547055 AGATGGAGACCGATTGTCC 59 NA Rattus norvegicus 81 AABR07051583.1 ENSRNOG00000050066 ENSRNOT00000050825 3 1 1 82 3 17546601 17546985 GCTTTGGATTCTGGGAACC 59 17547031 17547049 AGACCGATTGTCCAATGGT 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198,ENSRNOT00000083028 1 2 2 87 5 149063490 149063508 TTTGAGCATCCTGACCCTG 60 149063559 149065106 CGGCAGGTAATTCATGTGG 59 NA Rattus norvegicus 81 Nin ENSRNOG00000005540 ENSRNOT00000007529 3 1 1 80 6 92470905 92470923 GTCGCTAATGGCTTCTGAG 58 92470579 92470861 TCATCCAGTTTCCTGAGGT 58 NA Rattus norvegicus 81 Chic1 ENSRNOG00000037919 ENSRNOT00000076490 3 1 1 82 X 74201231 74201249 AGTGAGCGAGGAGAATCTG 59 74201291 74211363 CGGTATTTATCACAGTGATGTGG 60 NA Rattus norvegicus 81 LOC100910867 ENSRNOG00000006114 ENSRNOT00000009264 2 1 1 80 4 25572947 25572967 CTTGAGAATCAGCTTGTTGAG 57 25573008 25573118 CAAAGTGCAGTTAACTCCAG 57 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 1 2 2 80 9 15114043 15114063 CTTTATGGACATGGAGAATGC 57 15114102 15114790 GTTGAGGTGTTTGATAAACTGG 58 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 1 2 2 80 4 88868767 88868786 CTTCCTTGACGTCATCAACG 59 88868827 88871435 TCTGTCTTGTTTGCTTCATGG 59 NA Rattus norvegicus 81 Lgr4 ENSRNOG00000005715 ENSRNOT00000007681 2 1 1 80 3 101146313 101147125 GACTTTGCTAATCTCAGGTCTC 59 101147164 101147184 ATTTGCATAAGAGTCACACCC 59 NA Rattus norvegicus 81 Flywch2 ENSRNOG00000004461 ENSRNOT00000005899 3 1 1 86 10 13112393 13114877 CCGAACCTGGATACAGGTG 60 13112325 13112343 CTTAGGGAGTGCAGTGGTC 60 NA Rattus norvegicus 81 Srpx ENSRNOG00000039666 ENSRNOT00000045753 3 1 1 80 X 14162592 14171189 CCTGTGTAGATATGGAACCTC 57 14162532 14162551 GGACTGTCAGCTTATTAGGC 58 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 2 2 2 80 12 23607119 23607375 GGAATCCTTTCTGAAGGTGG 58 23607058 23607077 TTCTCCTCGAACACTCTGTC 59 NA Rattus norvegicus 81 Zfp821 ENSRNOG00000000262 ENSRNOT00000000279 1 1 1 80 19 41944491 41944513 GGAAAGAGAATTAGACAGTGCAG 60 41944045 41944453 TTTAGGTTCTCTGTGACCTCG 60 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211,ENSRNOT00000068199 2 2 2 80 3 63444879 63444897 CATTACGGCGAAGTAACCA 58 63444940 63446096 CCAGTAATTCACCTTGACGA 58 NA Rattus norvegicus 81 Avil ENSRNOG00000050419 ENSRNOT00000073237 1 1 1 80 7 70300018 70300037 CGTATGGAAAGGCAAAGGAG 59 70300076 70300790 CCCTTCATCTTGATGAAATCCAG 60 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 3 2 2 80 7 34636064 34636083 TGCACAATAAGAGTGAGCCA 60 34636123 34641550 ATTCACATTTACCTGAGTGTCG 59 NA Rattus norvegicus 81 Apobec1 ENSRNOG00000015411 ENSRNOT00000020735 2 1 1 85 4 155390059 155398192 CACTCTGAGGAGAAGAATTGAG 58 155389995 155390013 CATACAGCAGACAGGTCTC 57 NA Rattus norvegicus 81 Adh6a ENSRNOG00000012281 ENSRNOT00000016556 2 1 1 80 2 243591526 243593176 TGTGAAACCAGGAGATAAAGTC 58 243593217 243593235 TTTCCTTTGAGGTGCAAGC 59 NA Rattus norvegicus 81 Prss41 ENSRNOG00000033690 ENSRNOT00000007039 3 1 1 80 10 13186027 13186759 GCTTTAGAAAGTTCCTTGATCC 58 13185968 13185986 CCCTGTTCCAGAAAGAAGG 58 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491,ENSRNOT00000089783 1 2 2 80 19 38062179 38077421 CATCCTGTTGTGAAGCTCC 59 38077462 38077483 ATATCTATCATCGGCTGTTCCA 59 NA Rattus norvegicus 81 Wwc1 ENSRNOG00000008065 ENSRNOT00000011061 3 1 1 80 10 20708191 20708209 GGAGGAGACTGGAGAAGGA 60 20701450 20708150 TGCTGTTTAACTTCAACCTCTC 59 NA Rattus norvegicus 81 LOC102548369 ENSRNOG00000031960 ENSRNOT00000041344 1 1 1 60 15 100303732 100303750 TTCGGATGCAAGAAGACAG 58 100303690 100303708 TGATGAGCCCATTTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata6 ENSRNOG00000023433 ENSRNOT00000030726,ENSRNOT00000081399 2 2 2 125 18 2425170 2425192 GGCTTTATATGAAACTCCATGGG 60 2426448 2426553 GAACAGAGCTGTTACCGGA 59 NA Rattus norvegicus 81 Swi5 ENSRNOG00000022860 ENSRNOT00000030558 1 1 1 80 3 11309711 11310949 TTAATAGCCGAGGGCTATCG 59 11309650 11309673 CACATCCTTGATGTCATTGTACTC 60 NA Rattus norvegicus 81 Rnf165 ENSRNOG00000048824 ENSRNOT00000075580 3 1 1 80 18 73840031 73849292 ACTGACTGGGATCTCAGTG 58 73839969 73839989 CTGATAGTGTTGAGGAATGGG 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033,ENSRNOT00000005317,ENSRNOT00000081141 3 3 3 80 6 28531320 28536547 AACGAGATGTTCCAGACCT 58 28536591 28536609 ACTGCTATTTGCGGTAGGA 59 NA Rattus norvegicus 81 Olr377 ENSRNOG00000013198 ENSRNOT00000017615 2 1 1 60 1 230649454 230649474 TGGCTTTATTCGTACTGTCAC 59 230649414 230649433 GTTGATCTCATTGCTTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efhd1 ENSRNOG00000015596 ENSRNOT00000021168 3 1 1 114 9 94387928 94387948 ACTCATGATGGAGAAACTGGG 60 94388024 94395520 AATGAGCAGAAACTCCCGA 59 NA Rattus norvegicus 81 Rnf40 ENSRNOG00000018840 ENSRNOT00000025499 3 1 1 80 1 199049760 199051679 ATCAAGGAGTACAAGGCCC 59 199051723 199051741 GTGGAAGCACTTGGTAAGC 59 NA Rattus norvegicus 81 LOC100912759 ENSRNOG00000049264 ENSRNOT00000071062 2 1 1 60 13 100189362 100189382 ATCAGCAAAGAACAACAGTGG 60 100189322 100189341 CCAGTGTCATCTCAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2g1 ENSRNOG00000020827 ENSRNOT00000028261 2 1 1 80 1 83627568 83629167 CAAGGTTATGGTTTAGCTCTGTC 60 83629205 83629225 AAAGTTTCGAAGGACAGTCAG 59 NA Rattus norvegicus 81 LOC100362808 ENSRNOG00000047490 ENSRNOT00000050604 3 1 1 83 1 75194602 75194788 TATTGCAGTTCTGTCTTGGTG 59 75194832 75194851 TATACTGAGGCCTGAAGACG 59 NA Rattus norvegicus 81 Olr1662 ENSRNOG00000061218 ENSRNOT00000086807 3 1 1 60 17 45687204 45687225 CACAATTATCACTCCAAGTCTC 57 45687165 45687186 TTTCATGTCTCGGTTTCTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmod ENSRNOG00000003183 ENSRNOT00000004382 3 1 1 93 13 50878437 50878455 ACTTGTCCTACAACCAGCT 59 50878510 50883601 ATGGAGAACTCATTGATCCTG 58 NA Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 2 2 2 80 5 120639705 120642142 CATGAGTAAAGTGAATGCTGTG 58 120642183 120642201 GACAGTGTCCAGGAAAGGA 59 NA Rattus norvegicus 81 Hopx ENSRNOG00000024689 ENSRNOT00000049774 1 1 1 85 14 33355168 33361770 AGACGCAGAAATGGTTTAAGC 60 33361817 33361835 CTAGTCCGTGACCGATCTG 59 NA Rattus norvegicus 81 Tsx ENSRNOG00000002925 ENSRNOT00000003922 3 1 1 80 X 74280230 74280248 CAGTGACAGCGACATTGAC 59 74280287 74281242 AACATCTCCATATACATGGAGGAG 60 NA Rattus norvegicus 81 Vom1r110 ENSRNOG00000060529 ENSRNOT00000078889 3 1 1 60 1 63185368 63185386 GGGTTCAACACATCCACAG 59 63185410 63185428 GTGGCTTGAGATTCTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr845 ENSRNOG00000059811 ENSRNOT00000085133 3 1 1 60 5 69477817 69477838 AGCAAAGAGGTGTATGTATCCA 59 69477778 69477797 CTGAGTTGATTCCACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304694 ENSRNOG00000031269 ENSRNOT00000042070 1 1 1 80 7 125864924 125864943 GACAGCAAAGGAGAAGAGTC 58 125863779 125864881 GTCACTGAACACCTCTTCG 58 NA Rattus norvegicus 81 Prg2 ENSRNOG00000008394 ENSRNOT00000011168 3 1 1 80 3 72386563 72387178 CTCTTCATCTAAGCTCTGAAGC 59 72387218 72387237 TTGATATCTCTGCTTCCCGA 58 NA Rattus norvegicus 81 Rac2 ENSRNOG00000007350 ENSRNOT00000009994 3 1 1 84 7 119788691 119788710 ACCATTGAGAAGCTGAAGGA 59 119785042 119788647 TCACTGAATCAATATCCTTGGC 59 NA Rattus norvegicus 81 Dpep1 ENSRNOG00000015880 ENSRNOT00000021397 1 1 1 80 19 55996617 55996635 CGACAATTGGCTAGTGGAC 59 55996679 55996963 TCATTCAGCACAAGCTTCC 59 NA Rattus norvegicus 81 Hist1h4m ENSRNOG00000057690 ENSRNOT00000091201 2 1 1 156 17 44815830 44815848 CTCATCTACGAGGAGACCC 58 44815692 44815710 CGAAGCCATAGAGGGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nub1 ENSRNOG00000009282 ENSRNOT00000045311 2 1 1 80 4 6957940 6957963 GTGTTGTTTAGACTCTACTTGC 57 6957881 6957899 GTTGAGATATTCCCGAGCC 58 NA Rattus norvegicus 81 Recql5 ENSRNOG00000005107 ENSRNOT00000007246 1 1 1 80 10 104445784 104446135 TTGTACTCGCTCAAACCCA 59 104445722 104445740 CAACAGTTCTGTGGCTGTC 59 NA Rattus norvegicus 81 AABR07017892.1 ENSRNOG00000048543 ENSRNOT00000072496 3 1 1 94 15 32296158 32296322 CTCCTAATGCTCCGAAGGA 59 32296380 32296398 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 RGD1564937 ENSRNOG00000030962 ENSRNOT00000068366 3 1 1 81 8 55193516 55193535 CTGATAGGCAACTGGAACCA 60 55192353 55193472 AGTGTCCAAACTGGGAAGG 60 NA Rattus norvegicus 81 Olr1652 ENSRNOG00000018492 ENSRNOT00000024940 1 1 1 60 17 2704728 2704749 CAACCCTCTCCTATACTCTGTG 60 2704689 2704707 CCCTGATACTAGCAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndrg3 ENSRNOG00000036813 ENSRNOT00000055232 1 1 1 80 3 153035668 153035949 CAGATTTGCACTCAATCATCC 58 153035608 153035626 TCAATCCAGCCTTTAGCAC 58 NA Rattus norvegicus 81 M1ap ENSRNOG00000007288 ENSRNOT00000009701 3 1 1 80 4 113793218 113811749 TCCCTGGAGATTACTGTCCT 59 113811786 113811810 GTTTATATCTTTCAACCCTTCCTCC 60 NA Rattus norvegicus 81 Mir3570 ENSRNOG00000035494 ENSRNOT00000053617 1 1 1 60 13 54952796 54952815 TACAATCAACGGTCGATGGT 60 54952755 54952773 GAACATTCAACGCTGTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3570 ENSRNOG00000035494 ENSRNOT00000053617 2 1 1 60 13 54952796 54952814 ACAATCAACGGTCGATGGT 60 54952754 54952772 TGAACATTCAACGCTGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Disc1 ENSRNOG00000019779 ENSRNOT00000057945 3 1 1 80 19 58040656 58040674 CAGGTACTCTGTGAGTGGA 58 58040716 58057075 GACATGAGATTCCTCTTTCCA 58 NA Rattus norvegicus 81 Gpr25 ENSRNOG00000008603 ENSRNOT00000011368 2 1 1 72 13 53137221 53137239 GTCCTGGAATTCTAGCTGG 57 53137167 53137185 CTCTACTTGGTCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204,ENSRNOT00000083181,ENSRNOT00000079694 1 3 3 80 2 240642915 240642933 ACAATGTTCTGCAGGTCCA 60 240643071 240648124 TGATATGGGCTGTCATTAGGT 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330,ENSRNOT00000064780,ENSRNOT00000077402 1 3 3 80 X 142123776 142129435 AGGACAGCACTTACACTCTG 60 142123715 142123734 ACAGCTTGGTTTGAACTCCT 60 NA Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 2 2 2 80 4 88713888 88713907 GATCTGCGACTTTGTCAACC 60 88713949 88717202 GTACCGTACTGAATTGCCTG 59 NA Rattus norvegicus 81 Ctsl ENSRNOG00000018566 ENSRNOT00000025462 1 1 1 80 17 1876235 1876466 CCCTATGAAGCAAAGGATGG 58 1876174 1876192 AGGGATATCCACAAACCCT 58 NA Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 3 2 2 83 20 31169983 31170001 TCAAGACTTCCCAGAGCAG 59 31170047 31200020 ACCGGAACATCCACTATCTC 59 NA Rattus norvegicus 81 Hist1h2aa ENSRNOG00000048122 ENSRNOT00000050526 2 1 1 65 17 43422606 43422625 CAAGAAGACGCGCATTATCC 60 43422560 43422578 TTATTGAGCTCCTCGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam188b ENSRNOG00000011530 ENSRNOT00000015469 1 1 1 80 4 85523385 85523924 GCTGACTGTTGATACCACC 58 85523965 85523986 GTTCTGATACAGAGCTCAAGAG 58 NA Rattus norvegicus 81 Fkbp7 ENSRNOG00000011758 ENSRNOT00000015722 2 1 1 80 3 63527042 63527062 GGAGCATTGAAACGTTTAAGC 59 63522800 63527005 TCTGTAAGTAAAGCTCTATCTCGG 60 NA Rattus norvegicus 81 Upk3a ENSRNOG00000013593 ENSRNOT00000018365 3 1 1 80 7 125921244 125921263 ATGTTCGATAGCTCAGAGCC 60 125921304 125922242 ATTCCAGGAGATAGCTGAGTC 59 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311,ENSRNOT00000065909 2 2 2 89 5 59063817 59063835 AAAGTGGAGATTTGTGGGC 58 59063888 59063991 ATTCTTGCACGGAGTTCTC 58 NA Rattus norvegicus 81 Mettl16 ENSRNOG00000002764 ENSRNOT00000003750 2 1 1 80 10 61648690 61651705 AAGCCAAGGGTGTAAACTC 58 61651749 61651767 CCATGATCTCTGTGATGCC 58 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 3 3 3 80 12 25478033 25478372 AACACTAAAGCATTGCAGTCC 60 25478413 25478432 CACAGTGACCTCGATTTCAG 59 NA Rattus norvegicus 81 LOC100910138 ENSRNOG00000031710 ENSRNOT00000051031 3 1 1 83 14 33908893 33911134 TTCAGAACACCAGACTGTC 57 33911181 33911199 AGTGTTCATATCCGTTCCG 57 NA Rattus norvegicus 81 Mcf2 ENSRNOG00000003435 ENSRNOT00000051550 2 1 1 80 X 143186108 143186127 TGTCAGAATAAACCCAGGTC 57 143177434 143186067 CAATTTCCGTTGACATTCCTG 58 NA Rattus norvegicus 81 Sorcs1 ENSRNOG00000011313 ENSRNOT00000015979 2 1 1 80 1 270001934 270001954 TGAACACTATCACGGTACAGG 60 269996374 270001893 GGAATTCCTCGTATACCGCA 60 NA Rattus norvegicus 81 Nudt12 ENSRNOG00000022576 ENSRNOT00000066968 3 1 1 81 9 105691028 105691047 ACTGCTTTAATGTATGCCGC 59 105690358 105690985 CAGACGATCTGTCACATCCT 59 NA Rattus norvegicus 81 Lrrc47 ENSRNOG00000024796 ENSRNOT00000034284 1 1 1 80 5 171305029 171305440 GCTGCACAGATACCTTCAC 59 171305484 171305502 AAAGAGATCACGTCTCCCT 58 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330 2 1 2 80 9 113355580 113356146 GTAGCAATGAGTTCTTGGATACAG 60 113355523 113355543 TGGACATATGAAGCATGTTGC 59 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 3 2 2 81 19 56784321 56787156 TTTCTCACTGATTCTGACTCCC 60 56784261 56784279 GGTTGAGGTGGAGGTAGAC 59 NA Rattus norvegicus 81 Phc1 ENSRNOG00000015191 ENSRNOT00000020529 3 1 1 80 4 155095523 155095544 TTCTTGTCCAGTAATCCTAGCC 60 155094828 155095482 AATCTCTTGGCAACCTTGC 59 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000076152 1 1 2 80 2 238605419 238606724 GCAGTGTAGAAGAAGTGTGG 59 238606765 238606785 CTCGGAGGTTTAAAGTCTCAG 58 NA Rattus norvegicus 81 Dnah9 ENSRNOG00000004171 ENSRNOT00000005583 1 1 1 80 10 52487332 52496197 CATCATATCTGTCACATCAACC 57 52487273 52487292 CTTACCACTTCCACCTACAC 58 NA Rattus norvegicus 81 Olr821 ENSRNOG00000046688 ENSRNOT00000044838 2 1 1 60 4 72670960 72670978 TGTAGTATCCTGGCTGCTG 59 72670999 72671020 GTAAGTGGACCAAAGAAAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500460 ENSRNOG00000005666 ENSRNOT00000007462 2 1 1 60 5 64615552 64615572 TCACTATCCTTGATTCTCACC 57 64615512 64615530 AAGGAGAGGTTGCTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnal4 ENSRNOG00000015583 ENSRNOT00000020941 1 1 1 105 7 120988544 120989651 CAACAATGAGAGTGCTGCA 59 120988457 120988475 GTGGGTGATCTCAAACCCA 60 NA Rattus norvegicus 81 Cebpd ENSRNOG00000050869 ENSRNOT00000074586 3 1 1 72 11 89008726 89008744 GAACGAGAAGCTGCATCAG 59 89008780 89008798 CTCTTTGAAGAACTGCCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565685 ENSRNOG00000023187 ENSRNOT00000031808 1 1 1 80 X 11091446 11092732 CCAGAATAGAACAGCTGTTGAC 59 11092770 11092791 TTTCAAATTCACACCCATCTCG 60 NA Rattus norvegicus 81 LOC100911363 ENSRNOG00000045747 ENSRNOT00000072756 1 1 1 80 1 91062395 91062414 TATTGAGGCCAACGAGAGTG 60 91062203 91062352 CTGACCTCCATGTCGTCTC 60 NA Rattus norvegicus 81 Rabgef1 ENSRNOG00000000895 ENSRNOT00000001196 3 1 1 81 12 29963767 29965459 GATCACAGACATCATTGAGATGG 59 29963708 29963726 GATGTGCTTGCTACACCTG 59 NA Rattus norvegicus 81 Gsc2 ENSRNOG00000000282 ENSRNOT00000041975 1 1 1 88 11 87221220 87221238 ACAGAACCAGTATCCCGAC 59 87221290 87222035 TCTTGAACCAGACCTCCAC 59 NA Rattus norvegicus 81 Haus1 ENSRNOG00000017067 ENSRNOT00000023101 2 1 1 80 18 74145246 74145264 TCCAGAACATGGACTTCCT 58 74144836 74145202 TGGATGAAAGTTGCTCCTC 58 NA Rattus norvegicus 81 Ssbp3 ENSRNOG00000007920 ENSRNOT00000011408 3 1 1 81 5 126640465 126646464 CGGTCTAACTTTCCAATGGG 59 126646508 126646526 ATCCATTCATGTGGTGTGG 58 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943,ENSRNOT00000080056 2 2 2 80 7 139633282 139633300 TGTGGAATGTTTGCTTGCA 59 139630563 139633239 ATATGGCATGTGTTGCTGTG 59 NA Rattus norvegicus 81 Fam228b ENSRNOG00000049615 ENSRNOT00000072340 2 1 1 80 6 30038824 30038842 GTTTCCCAAGCTCAAGAGC 59 30038881 30043465 GTATCTTCTTTAGCTAAAGCCTCC 59 NA Rattus norvegicus 81 Cabyr ENSRNOG00000047436 ENSRNOT00000071392 2 1 1 85 18 4086403 4086513 TTAGAGAAGGGAATTCGTCTCTG 60 4091685 4091703 CACTCCTTCTGCCCATCTC 60 NA Rattus norvegicus 81 Krtap7-1 ENSRNOG00000043017 ENSRNOT00000064103 1 1 1 60 11 29641360 29641378 GGAACCATCTACAGCTCCC 60 29641318 29641340 CTGGATTCTGGAAGTTACTAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam71d ENSRNOG00000028351 ENSRNOT00000029888 2 1 1 80 6 101883254 101885005 GTGCTCACCAGGTTTATCC 58 101885049 101885067 CAGCTTTACCTTGAGACGC 59 NA Rattus norvegicus 81 Krtap16-5 ENSRNOG00000040064 ENSRNOT00000061606 2 1 1 60 11 28900185 28900203 ATGGTTCTGGTTTCGGAGG 60 28900143 28900161 GAGCCATATCCGTAGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb14 ENSRNOG00000020059 ENSRNOT00000027168 3 1 1 60 18 30529210 30529229 GCTCATTTCCATCAATGCTG 58 30529252 30529270 CTCATAGTCCATCGCCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789,ENSRNOT00000064557 3 2 2 98 3 8958396 8961468 ATACCCTGCAGGTGATCTG 59 8961528 8961548 CGCTTGAATATGATGAGGGTC 59 NA Rattus norvegicus 81 Olr1528 ENSRNOG00000039716 ENSRNOT00000041445 1 1 1 60 11 43144068 43144088 CTTGGAAATTTAGCCTTTGCC 59 43144108 43144128 TAAGCATCTTTGGTGTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35 ENSRNOG00000014272 ENSRNOT00000019162 2 1 1 81 3 23297405 23297424 ATCTGAAGGTGGAACTGTCC 60 23296870 23297362 ACGACTCGTATCTTGGAGAG 59 NA Rattus norvegicus 81 Rn60_10_0700.6 ENSRNOG00000037114 ENSRNOT00000055958 2 1 1 60 10 70366991 70367012 ACAAAGGCAAACAAACCTAGAG 60 70367033 70367051 CTCTGTCACAGCTTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 2 1 1 60 X 70428078 70428333 TGGACTAAGGAAGCTAGGG 58 70428036 70428057 CCTAGTGATGTGAATAGCAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr728 ENSRNOG00000051785 ENSRNOT00000049936 3 1 1 64 3 78877468 78877487 CCCTCAGAAATGAGGAAGTC 58 78877511 78877676 ATGAGATTTCCTCATTTGACCC 59 NA DesignNoJunction Rattus norvegicus 81 Capn1 ENSRNOG00000020935 ENSRNOT00000028431 2 1 1 80 1 221363276 221363296 TATGAGTGGAACAAAGTGGAC 58 221363130 221363234 GAAGGACATCCAGAACTCC 57 NA Rattus norvegicus 81 Klhl5 ENSRNOG00000008421 ENSRNOT00000004003 3 1 1 80 14 44844692 44844711 GATAGACCAGAAGTGGACGA 59 44834093 44844651 ACTACTATTGGAAGTCCTGCT 58 NA Rattus norvegicus 81 Ginm1 ENSRNOG00000015239 ENSRNOT00000020810 1 1 1 80 1 1870695 1872485 TGTGCGTGAGAACAAAGGA 60 1870633 1870655 CCGTCTGGGTATAAGATGATAGG 60 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758,ENSRNOT00000037100,ENSRNOT00000011801 1 3 3 80 13 52274088 52274112 CCTATATTATAGGTACCACCAACCA 60 52273551 52274051 AGGTTAGCATCCTGAAGCTC 60 NA Rattus norvegicus 81 Nepn ENSRNOG00000000410 ENSRNOT00000066492 3 1 1 80 20 33528034 33539113 AAGTCAGACCTCCTATCTAACCT 60 33539151 33539171 AATAGACTCTGTTCCACTGGC 60 NA Rattus norvegicus 81 Sssca1 ENSRNOG00000012736 ENSRNOT00000017034 1 1 1 81 1 221088499 221089050 GATAAAGATAACCCGGCTCTG 58 221088438 221088456 CAGGCTCTGTAGTAGAGGC 59 NA Rattus norvegicus 81 Kifc3 ENSRNOG00000014087 ENSRNOT00000066032 2 1 1 80 19 10329946 10329964 TGCTTAAGGAGATGGAGCA 58 10330006 10330437 CCTCATACATGGCAATCTGAG 59 NA Rattus norvegicus 81 Polg2 ENSRNOG00000013728 ENSRNOT00000018394 3 1 1 80 10 94972364 94972383 TACCTCTACGATTCCTTCCA 57 94972183 94972324 GTGAAGTTTAAGCACCTTTCTC 58 NA Rattus norvegicus 81 Znrf1 ENSRNOG00000019028 ENSRNOT00000025716 1 1 1 106 19 43750757 43750775 CCATAGAGACGGGATGCTG 60 43750845 43821781 GGCACTTGAAACCACTGTG 60 NA Rattus norvegicus 81 Tbc1d1 ENSRNOG00000002180 ENSRNOT00000029209 2 1 1 80 14 45683816 45683836 ATTAGAACTCCAGAAGCACCT 59 45679907 45683777 GGTCTCAATTTCTGAACTTCCT 58 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000039151 2 1 2 103 3 11812927 11812945 ACAAACCCTTGGGAAAGCT 60 11813179 11813295 CCTTGGCATTGCATTGGAG 60 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140,ENSRNOT00000018452,ENSRNOT00000018272 3 3 3 80 1 231458389 231458408 CACTAGGAGGTCAGTCTCAC 59 231457051 231458347 TGGAGTCTCTGTCTCTTTGG 59 NA Rattus norvegicus 81 Rnf138 ENSRNOG00000015645 ENSRNOT00000021061 2 1 1 80 18 15162362 15162382 TCAGGATGAATATGGTGTCTC 57 15156815 15162321 TCACTCCTATTACTGCTCCT 57 NA Rattus norvegicus 81 Cts7 ENSRNOG00000033540 ENSRNOT00000043686 1 1 1 80 17 3281874 3281892 CACACTATGCAGAATGGCC 59 3281934 3282042 CATTTCCTCACCAGTCATGTC 59 NA Rattus norvegicus 81 Hs6st3 ENSRNOG00000048243 ENSRNOT00000071685 2 1 1 60 15 105253497 105253517 TACTACATCACAATGTTGCGG 59 105253538 105253557 GAACGTGTTTCCATTCACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122,ENSRNOT00000085899 3 2 2 80 7 12161995 12164217 GACTCCTTTAGTGGACTCGG 60 12164260 12164278 CTCCTCGTCCTCTTTCTCC 59 NA Rattus norvegicus 81 Ccdc59 ENSRNOG00000004183 ENSRNOT00000005740 1 1 1 80 7 47929932 47932406 CCGAGTACAGTAAATTCTGTGAC 59 47932445 47932464 TTCATACTCTTCCTGTGCCT 59 NA Rattus norvegicus 81 Mmp15 ENSRNOG00000012622 ENSRNOT00000017629 2 1 1 82 19 10082713 10084087 TTCTTCAAAGGTAACCGCT 57 10082649 10082667 GTACCATAGCTGCTCAGTG 58 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000056933,ENSRNOT00000027987 3 2 2 81 1 87187547 87187565 CCTATGTCCAACATGGCGA 60 87187606 87187713 AGCGGTCGATATTCTTATCTACC 60 NA Rattus norvegicus 81 Cask ENSRNOG00000003054 ENSRNOT00000004187 1 1 1 80 X 9442541 9446830 TGAACTTCAGGAATGGCGA 59 9446874 9446892 CCAAACCAAGTACAGCTGG 59 NA Rattus norvegicus 81 AC117925.7 ENSRNOG00000061571 ENSRNOT00000083404 1 1 1 175 4 114767025 114767043 AAGACCTGGTTCCAGAACC 59 114766790 114766808 AAGAGTGACGAGTTGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Ptpmt1 ENSRNOG00000009723 ENSRNOT00000013584 1 1 1 90 3 79742857 79742875 CTGGTACTGGACGAGAACG 60 79739413 79742804 TCTTCCATTCCTTCGAGGTG 60 NA Rattus norvegicus 81 Arl2 ENSRNOG00000021010 ENSRNOT00000028525 2 1 1 82 1 221507388 221507406 GGAGAAGATGTGGACACCA 59 221507235 221507344 CAGATGTTCAGCTTGAATCCC 59 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77292177 77292681 GAATTTGCCTTCCGATATGTG 58 77292117 77292137 ATCCACAGTAGGTTTCTTAGC 58 NA Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 1 1 2 73 20 3821638 3821783 CTTGGAACCTCATTCGCAC 59 3821583 3821602 CTAACTCTTTCTCACCGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 3 1 2 74 20 3821638 3821783 CTTGGAACCTCATTCGCAC 59 3821582 3821600 CCTAACTCTTTCTCACCGC 58 NA DesignNoJunction Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000089622 1 1 2 60 20 3820325 3820345 CAGCAGATACTACAATGGGTC 58 3820285 3820305 CCATGTAAGGATAGGAGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1587 ENSRNOG00000050941 ENSRNOT00000049819 2 1 1 60 13 92136589 92136608 GCTGTATGTCTTCCACTCCT 59 92136629 92136649 CAGAGCCATGACACTTAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560925 ENSRNOG00000011042 ENSRNOT00000056434 2 1 2 98 9 105545604 105545848 ACGATAGAGATCCTTGCGC 60 105545524 105545542 TTCAGGGTGCTTGATAGCC 60 NA Rattus norvegicus 81 Amh ENSRNOG00000019377 ENSRNOT00000026220 1 1 1 97 7 11776760 11777111 GGCTGAAGTGATATGGGAG 57 11776681 11776699 GGTATAGCACTAACAGGGC 57 NA Rattus norvegicus 81 Slc25a2 ENSRNOG00000027359 ENSRNOT00000027128 2 1 1 60 18 30775111 30775129 GTCAGGAAAGTGGCAAGAG 59 30775069 30775087 CAGTGGCAGTCTCAAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 3 1 1 62 18 75203899 75203918 CAGGCCTTCAAGATGAATCG 59 75127374 75203874 CATCCCTGGAGTCATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 1 2 2 80 X 10404718 10405260 CCTAAGGAAATACAGATGCTGG 59 10404659 10404679 TGAAGTAGACCCAACTCTTCC 59 NA Rattus norvegicus 81 Jag2 ENSRNOG00000013927 ENSRNOT00000019213 2 1 1 80 6 137715804 137715825 TAGATGAGATCAATGGGTACCG 59 137715655 137715765 TCGTGAATATGACCACTTCCT 59 NA Rattus norvegicus 81 Kcna4 ENSRNOG00000004918 ENSRNOT00000006524 3 1 1 60 3 98298523 98298543 TTGAATATCCCGAGAGTTCCA 59 98298565 98298583 ATGACCAGGACAGATACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023404,ENSRNOT00000023574 3 2 2 80 1 205005225 205005645 TTCACCATCAAGCAGATGAG 58 205005164 205005183 AGCTAAGGCTTTCTCATCCA 59 NA Rattus norvegicus 81 Usp50 ENSRNOG00000011401 ENSRNOT00000015238 1 1 1 80 3 119234218 119234240 CTGGACCTCACTCCTTATATCTG 60 119225369 119234179 TCCAAAGTGGTTCACAACTG 59 NA Rattus norvegicus 81 Bsnd ENSRNOG00000006543 ENSRNOT00000008739 3 1 1 93 5 126076387 126080281 CTATCCTAAGATCACCTTTGTGC 59 126076316 126076334 TTCTGAAAGCCCAGTCTCC 59 NA Rattus norvegicus 81 Ang2 ENSRNOG00000025562 ENSRNOT00000032536 2 1 1 60 15 28104040 28104059 TGCGAAAGCATGATGAAGAG 59 28103999 28104019 TAAAGGTGTTGACCTCTTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herpud1 ENSRNOG00000018796 ENSRNOT00000025559 3 1 1 80 19 11050648 11050987 TACTACATGCAATACTTGGCTG 59 11050589 11050609 GACCACAGGTATTTCTTGTGC 60 NA Rattus norvegicus 81 Fam159a ENSRNOG00000030641 ENSRNOT00000043054 2 1 1 83 5 127977555 127977574 CTGCTACCTGTTCATCAGCT 60 127968135 127977509 GACATCTCCTTGGAGCCTG 60 NA Rattus norvegicus 81 Nr2e1 ENSRNOG00000050550 ENSRNOT00000075151 3 1 1 80 20 47288294 47291532 GCTACATTCATACGAGATACCC 58 47288235 47288253 TAATCGACCGTAAAGCTGG 57 NA Rattus norvegicus 81 Tbc1d19 ENSRNOG00000003003 ENSRNOT00000004030 2 1 1 80 14 59494601 59497047 CTGAATGTGTTTCCTTTGCC 58 59494540 59494558 TGCTTTCCTCATGTACACC 58 NA Rattus norvegicus 81 Trappc12 ENSRNOG00000009039 ENSRNOT00000029859 1 1 1 80 6 48008225 48016565 GACAACATTCAGGGAGATGC 59 48008164 48008183 TAAGACTTGCCTCTTTGCTG 58 NA Rattus norvegicus 81 Tsen34 ENSRNOG00000059572 ENSRNOT00000084846 1 1 1 80 1 64097883 64097901 GAAGTGAAGCTACCCAAGG 58 64097689 64097839 GGGATGAAGAATCTGCTCC 58 NA Rattus norvegicus 81 Tsen34 ENSRNOG00000059572 ENSRNOT00000084846 2 1 1 80 1 64097886 64097904 GTGGAAGTGAAGCTACCCA 59 64097692 64097844 ATGAAGAATCTGCTCCTTCCT 59 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 1 2 2 80 15 35415511 35415657 TGTTAAAGCTGAAGAGTAAGGC 59 35415452 35415470 GTTTCACTTTGACGTTGCG 59 NA Rattus norvegicus 81 LOC100359752 ENSRNOG00000038241 ENSRNOT00000058219 2 1 1 80 18 81666902 81673341 CTCCTGAGAAGCTACAGGAG 59 81666841 81666861 TCTCAATGACAGCATTCTGGT 60 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042,ENSRNOT00000085966 3 2 2 80 4 123536754 123538079 GTGTGATAAGATCCAGGGTG 58 123536693 123536711 GGTTCCTTCTTGGTCAAGG 58 NA Rattus norvegicus 81 Dsg2 ENSRNOG00000016526 ENSRNOT00000022270 3 1 1 80 18 15598592 15598614 CATTCACCTTCTCCATCATTGAC 60 15596418 15598553 GCACACTGGTACTTTCTTGG 59 NA Rattus norvegicus 81 Ankrd65 ENSRNOG00000043331 ENSRNOT00000068770 1 1 1 112 5 173238616 173239536 CACCACCAAGAAATTGAGGTG 60 173239610 173239628 ATAGCACGTAGACAGCCAC 60 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586,ENSRNOT00000073105 1 2 2 80 12 31249061 31249080 GCTATTCTGGTCCTTCTGTG 58 31238104 31248934 GCTAAGACCTCAAACCCTG 58 NA Rattus norvegicus 81 Hmgb3 ENSRNOG00000011096 ENSRNOT00000015044 1 1 1 80 14 51460501 51460756 TCTGAGAGGTGGAAGACGA 60 51460439 51460458 ATCGTAGCGTACCTTATCCG 59 NA Rattus norvegicus 81 Atp13a3 ENSRNOG00000001724 ENSRNOT00000002350 2 1 1 81 11 73957899 73962705 GATGAAATGGAGATACATGGCT 58 73962746 73962765 AACCACCAGTACAAATCACC 58 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 2 2 2 80 18 11780755 11780774 AGCCTGTAAAGATGTGACCT 59 11779024 11780716 CACTCCTTCAAACTAACTCTTCC 59 NA Rattus norvegicus 81 Lep ENSRNOG00000045797 ENSRNOT00000071926 1 1 1 69 4 56347131 56347152 CAGGATCAATGACATTTCACAC 58 56348747 56348765 AATGAAGTCCAAACCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr271 ENSRNOG00000034061 ENSRNOT00000048478 1 1 1 60 1 172931694 172931715 CCCAAATCTAACTACTCCACAG 58 172931655 172931673 TCACCACCATGTAGAACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.1 ENSRNOG00000022251 ENSRNOT00000029030 2 1 1 60 X 73988714 73988733 GACAGTGAAGGCTAAGTTGG 59 73988673 73988692 GGTAAATGGCATCCACTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr724 ENSRNOG00000006706 ENSRNOT00000008750 3 1 1 60 3 78790334 78790352 ACAGTGATGGCTTATGACC 57 78790292 78790312 TGATGGTCATATAGTGCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000090716,ENSRNOT00000007887 3 2 2 81 6 72487069 72487088 TTCAAATTGATCTACCGGCA 58 72487128 72489113 CATAGATAGCCATCTCATTCTCC 58 NA Rattus norvegicus 81 Mzt2b ENSRNOG00000001834 ENSRNOT00000002511 3 1 1 81 11 89277669 89277847 CCGATGTGTTCAAGATTCTAGTG 60 89277887 89277906 CACATGGACTTCAGCATCTG 59 NA Rattus norvegicus 81 Dhrs2 ENSRNOG00000018177 ENSRNOT00000024483 1 1 1 81 15 33885376 33885397 GTTCAGCCAATTAACAGATGAG 58 33885439 33886699 AAAGCCAATCCCTCTTGTG 58 NA Rattus norvegicus 81 Dhrs2 ENSRNOG00000018177 ENSRNOT00000024483 2 1 1 91 15 33885366 33885384 CAGCAAGAAAGTTCAGCCA 59 33885439 33886699 AAAGCCAATCCCTCTTGTG 58 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000026231 3 1 2 83 1 198116553 198116687 TGTCCTAGCTGCAAGAAGTC 60 198116489 198116508 CAAATCCACCTCTTCCTCCT 59 NA Rattus norvegicus 81 Tpgs2 ENSRNOG00000054118 ENSRNOT00000082963 3 1 1 80 18 17343786 17343804 TTTGAGCTGGATTCATGCG 59 17342083 17343744 AGTGTCATGAGCTAATCCAGG 60 NA Rattus norvegicus 81 Mir17 ENSRNOG00000035657 ENSRNOT00000053780 3 1 1 61 15 100179879 100179900 GTCAGGATAATGTCAAAGTGCT 59 100179921 100179940 CTTCACTGCAGTAGATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458,ENSRNOT00000081087 2 2 2 80 14 37214456 37216374 CACCAATTCTTAGAGCAATCGA 59 37214397 37214416 TATTGTCCTGCTGAACTCCA 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869,ENSRNOT00000003928 2 3 3 80 13 71974302 71976496 TGGTGAACATTAGCAACAAGAC 60 71974243 71974261 CCACCTCTTCCTCTTCCTC 59 NA Rattus norvegicus 81 LOC687896 ENSRNOG00000047331 ENSRNOT00000066983 2 1 1 60 10 60849783 60849804 ACCACACTCATATCTTTGTCAC 59 60849823 60849843 GATTAGCACAGAATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 2 2 2 82 20 32296564 32296582 ATATGAACGCAGGTCAGGT 59 32294811 32296518 GGGAACAGCAATACCTGGA 59 NA Rattus norvegicus 81 LOC680624 ENSRNOG00000029763 ENSRNOT00000043227 1 1 1 110 11 12276132 12276727 GTGGTAGTTCGCAGTAGCT 60 12276801 12276819 CTTGTAGCCTAGGCCACTC 60 NA DesignNoJunction Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600,ENSRNOT00000015426 1 2 2 80 4 9188678 9188780 CTGTAGTTAAAGGAGAAGCAGG 59 9188821 9188839 GCATGGCCTTCTTCAAGTG 60 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600,ENSRNOT00000015426 3 2 2 80 4 9170098 9170120 CTGGATAAAGCTGACTATCTGAG 58 9170160 9174025 TCTGTCAGTCAACTCTTGC 57 NA Rattus norvegicus 81 Tut1 ENSRNOG00000020047 ENSRNOT00000027187 3 1 1 80 1 225151541 225152714 TTACTACAGCCAACCGACC 59 225152757 225152776 TGGTAGCTCGTAGTTGTACC 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000032885 ENSRNOT00000048429 3 1 1 60 18 62476530 62476550 GATGCCAACAAGAACAAAGGT 60 62476490 62476511 TTTCCAAATACTCCATCAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083,ENSRNOT00000082627 3 2 2 80 2 104778669 104778688 GCCATATTCAATACATGCCC 57 104778731 104781437 TAAGTGCGAACTTCACCTG 58 NA Rattus norvegicus 81 Fam81b ENSRNOG00000026845 ENSRNOT00000036547 1 1 1 80 2 3094058 3099084 AACATTGAGCTCCTAGAAGAC 58 3093998 3094016 GTTTAGATCCTGCACTGCA 58 NA Rattus norvegicus 81 Nap1l2 ENSRNOG00000003025 ENSRNOT00000004038 1 1 1 60 X 73998849 73998867 GAGACTAACGGCAATGAGG 58 73998807 73998828 CATAACCATCATCTTCATCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC103179.2 ENSRNOG00000047174 ENSRNOT00000074051 3 1 1 60 18 29973252 29973272 GACACTTGGTTTCCACTAGAG 58 29973294 29973312 TCAGCACAGCATTGATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap10 ENSRNOG00000002899 ENSRNOT00000003871 3 1 1 81 10 48194412 48194431 TTTCAAGTAGCAGGACAGCA 60 48193729 48194368 CAGGATCTGCCCAAGTCTC 60 NA Rattus norvegicus 81 Supt4h1 ENSRNOG00000007845 ENSRNOT00000010448 2 1 1 80 10 75032440 75032949 GCTCGTTAGTCAAGACTATAGAC 58 75032988 75033007 TGTTGCCCTTCATTTGTAGG 59 NA Rattus norvegicus 81 Slc7a9 ENSRNOG00000012344 ENSRNOT00000016919 2 1 1 80 1 91722422 91722936 AAACCCTTACAGAAACCTGC 58 91722976 91722997 GCAATATTCATGAGGATGTAGC 58 NA Rattus norvegicus 81 Olr1347 ENSRNOG00000047997 ENSRNOT00000051413 1 1 1 60 9 99735066 99735084 TCGTTCTGGTAGGGTTTGG 59 99735107 99735126 AGGAACACAGCAAATAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1002 ENSRNOG00000046978 ENSRNOT00000050967 3 1 1 60 7 6216514 6216534 CTTAAACCATCAGTCAAGCAG 57 6216553 6216574 AGGTATTGAGCACAGAAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 3 2 3 82 4 163419650 163419670 CTGGATTCTTTCGAAAGAGCA 59 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047658 ENSRNOT00000042220 2 1 1 60 11 85042362 85042380 CCATGCTCAGTTTCTTGGG 59 85042514 85042533 CTGAATGTCACATCTGGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hpgd ENSRNOG00000010610 ENSRNOT00000014229 3 1 1 81 16 37460912 37474134 ATTTCTTCAATAGCAGGGCTC 59 37460851 37460870 GTGTGAATCCGATTATGCCA 59 NA Rattus norvegicus 81 Fndc5 ENSRNOG00000030238 ENSRNOT00000047152 2 1 1 93 5 147325927 147326254 AGAACAAAGATGAGGTGACCA 59 147326309 147326327 CACATGAAGAGGACCACGA 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855,ENSRNOT00000081679 3 2 2 80 8 17466266 17471905 GAACGTCCTAGAATCAATAAGTTGG 60 17466210 17466228 TCTGCCTGAAGCAATTCCA 60 NA Rattus norvegicus 81 Ccdc81 ENSRNOG00000033733 ENSRNOT00000055488 2 1 1 80 1 154072145 154073047 AAGAAATACAAGGCTACAGCAG 59 154071300 154071320 GATCAGGAAGTATGAGAGGGA 58 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000091089 3 1 2 80 13 91057762 91061670 CAGTCCACTCTTGTCAAGTG 59 91061712 91061731 CCTTCTCCCAAATCATTGCC 59 NA Rattus norvegicus 81 Grin3b ENSRNOG00000012562 ENSRNOT00000017064 1 1 1 80 7 12770115 12770209 TTTGCTATCGAGGGCTACG 60 12770251 12770271 GTACCTACTGATGAACTCCGA 59 NA Rattus norvegicus 81 Olr1490 ENSRNOG00000050244 ENSRNOT00000072840 3 1 1 60 10 60391806 60391825 AACTTGTCCTTCACTGACCT 59 60391848 60391866 TGTTCTGTAGCAACTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689766 ENSRNOG00000021411 ENSRNOT00000029081 3 1 1 81 13 95902003 95902022 CGGACAAGTGGCATAATGAG 59 95902063 95907633 CCTAGTTTCTTATCCCAACCGA 60 NA Rattus norvegicus 81 Rbm15b ENSRNOG00000014161 ENSRNOT00000018995 3 1 1 60 8 115618631 115618649 ACTTCTCACAGCAGTACCT 58 115618589 115618608 TGTTCTTCCTCTAACTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 3 3 5 91 8 39379835 39379854 TTACCATGGTAACCTCCCAG 59 39378996 39379782 GAGGTCAAGGTTAACCTGTG 58 NA Rattus norvegicus 81 Olr1423 ENSRNOG00000049845 ENSRNOT00000045318 2 1 1 60 10 44122299 44122319 ATCCTACTCATCCATCTTCCT 58 44122259 44122277 CTTCTTCCTACCCTCTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000089443,ENSRNOT00000009444,ENSRNOT00000089238 2 3 3 60 6 135088683 135088701 TTTGCTGAAGGCATCTGGA 60 135024790 135024808 GGGTATCCTCTGAGTCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Pus7 ENSRNOG00000010572 ENSRNOT00000014063 2 1 1 80 4 7918416 7918435 GGCTTCATCAACTACTACGG 58 7918476 7921292 CTGTAGAATTGCTCTTCCGAC 59 NA Rattus norvegicus 81 Afmid ENSRNOG00000050205 ENSRNOT00000073809 1 1 1 80 10 106840142 106840160 CCTGTGTTGGTGTTTGTGG 60 106840204 106840936 AAGGCGTAGTGTCTCACAG 60 NA Rattus norvegicus 81 AABR07058267.1 ENSRNOG00000005486 ENSRNOT00000007587 3 1 1 80 7 107413915 107414166 TTCAGTACCAGAAGTGCCTG 60 107414205 107414227 CCACAACTTAAATCAAGAGGGAG 60 NA Rattus norvegicus 81 Gnpda2 ENSRNOG00000002177 ENSRNOT00000002992 2 1 1 88 14 62638544 62638562 GATTTGCAGGCAGAGTGTG 60 62633514 62638493 CCATCTGGACCTATTCCTCC 59 NA Rattus norvegicus 81 Rn60_X_0749.4 ENSRNOG00000051178 ENSRNOT00000076567 1 1 1 80 X 74018359 74018378 ATTGCATGTTATGGTGCCAG 59 74018415 74018630 CTGCCACCATAATATTCTAGAAGAG 59 NA Rattus norvegicus 81 Olr1061 ENSRNOG00000048023 ENSRNOT00000046955 1 1 1 60 7 9193061 9193079 AGCCCTTTCTTCTCTAGCA 58 9193019 9193038 GTAGGTAACCAAGAACACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osr1 ENSRNOG00000004210 ENSRNOT00000005666 1 1 1 80 6 35314666 35314684 TCTCTGGTCACTCAAGTCC 58 35314726 35319111 CAATAATCGATCTTGTTCCGC 58 NA InUTR Rattus norvegicus 81 Olr95 ENSRNOG00000045808 ENSRNOT00000055226 3 1 1 60 1 168479338 168479356 ATTGGGATTCCCTTCTGCT 59 168479296 168479320 CCAGAATAGTTACATTTCCCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kat8 ENSRNOG00000019585 ENSRNOT00000026527 2 1 1 80 1 199372067 199372245 CTATCAAAGATCTTAGCCAGATGAC 59 199372283 199372301 ACTTGACCATGTTGAGGGA 59 NA Rattus norvegicus 81 Kat8 ENSRNOG00000019585 ENSRNOT00000026527 3 1 1 80 1 199372072 199372247 AAAGATCTTAGCCAGATGACCA 59 199372286 199372306 CCAGTACTTGACCATGTTGAG 59 NA Rattus norvegicus 81 Rnf181 ENSRNOG00000012035 ENSRNOT00000016699 2 1 1 80 4 100223312 100223478 CCCTGGTTAAGTAAGACAAATTCC 60 100223255 100223276 CTTGTGCTCTTCATAACTGTCG 60 NA Rattus norvegicus 81 LOC100360056 ENSRNOG00000032130 ENSRNOT00000044231 3 1 1 60 1 183763633 183763654 GCTTTATTAAGAAGGTCTGGGT 58 183763594 183763612 ATTTCCTGGTAAACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdrd9 ENSRNOG00000053631 ENSRNOT00000086594 1 1 1 80 6 136600459 136601128 CTGTTGAAGGAGGTTGGAG 58 136601172 136601190 CAGGAAGGTCAATTCACCA 57 NA Rattus norvegicus 81 Mus81 ENSRNOG00000020617 ENSRNOT00000028015 1 1 1 80 1 220865168 220865186 CTGAACACTGCCTTTCAGC 60 220864976 220865124 AGTAGTGCCAGGTTCTGAC 59 NA Rattus norvegicus 81 AABR07002689.1 ENSRNOG00000050032 ENSRNOT00000075189 1 1 1 80 1 81377921 81377939 CAAAGAGATCCTCCAAGCG 58 81377778 81377877 AGACTGGAGATGTAGGAGC 58 NA Rattus norvegicus 81 Rdh14 ENSRNOG00000039551 ENSRNOT00000006020 1 1 1 80 6 36107752 36111050 CAAGAACTGCTACAGGAGGA 59 36111091 36111111 AGTCTTCGTATATGGGCACTG 60 NA Rattus norvegicus 81 Tmem110 ENSRNOG00000017051 ENSRNOT00000023314 3 1 1 80 16 6956395 6956413 AACCAGGACTCAAGGAACG 60 6956454 6958043 GATCAGGATCTCAGACTCAGAC 60 NA Rattus norvegicus 81 LOC100910109 ENSRNOG00000031244 ENSRNOT00000051207 1 1 1 60 18 4371195 4371216 AATGACAGATATGACGAGATCC 58 4371156 4371174 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapre2 ENSRNOG00000049681 ENSRNOT00000075444 2 1 1 96 18 15764829 15770190 AACGAACAGGTTCATTCACTG 59 15770248 15770266 GGCATAGCAGCTCAATCTC 59 NA Rattus norvegicus 81 Sp1 ENSRNOG00000014084 ENSRNOT00000019403 3 1 1 80 7 144038720 144039007 TAAACGTACACATACAGGAGAG 58 144039048 144039066 TTTGACAGATGATCGCTCC 58 NA Rattus norvegicus 81 Tcf7l1 ENSRNOG00000014753 ENSRNOT00000020005 2 1 1 80 4 100659443 100659462 GATGATTCCAGACCTGAGCA 60 100514478 100659400 TTCATCTGCAGGTAGGTGC 60 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 3 2 2 83 1 199019940 199026205 GACATCATTGGCAGAGGAG 58 199026250 199026270 CATGATCTTCACTGCAAACTC 58 NA Rattus norvegicus 81 LOC680656 ENSRNOG00000042062 ENSRNOT00000065877 1 1 1 60 5 173140165 173140183 CTCCATCTGTGTCATGCTG 58 173140206 173140225 GAGGTTCTCGGTGATGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tenm4 ENSRNOG00000011151 ENSRNOT00000015181 1 1 1 80 1 161876581 161880096 CAACAGCAAGTCCATCCTC 59 161880140 161880158 TGGTCAAAGCGTTCTAAGG 58 NA Rattus norvegicus 81 Ccdc174 ENSRNOG00000010090 ENSRNOT00000013498 3 1 1 80 4 123781161 123781179 CTTTGCCCGAGACAAAGAG 59 123781221 123783269 ATTCTCTGATCTGTTGTCTGC 58 NA Rattus norvegicus 81 Nudt19 ENSRNOG00000059386 ENSRNOT00000079088 3 1 1 80 1 91827110 91827129 AGAAGTACCCGAGAAATGGC 60 91820709 91827067 TACAGCTCATCTCCTGGGA 59 NA Rattus norvegicus 81 Olr898 ENSRNOG00000046110 ENSRNOT00000051724 3 1 1 60 7 5250633 5250652 TGTAGCTGTGCTCAATACCT 59 5250592 5250613 CCTTAGGGTGTAAATGAAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcmt1 ENSRNOG00000014330 ENSRNOT00000019623 2 1 1 80 1 1750802 1750825 ATCTAACCCTTACATGGATTCTCC 60 1746390 1749371 AGTGCATATGCATGCATGTG 60 NA Rattus norvegicus 81 Prss54 ENSRNOG00000023092 ENSRNOT00000033953 3 1 1 80 19 9899987 9905695 CTCCAGAACAGGAAGGAGG 59 9905737 9905757 TGAATACTCTTTGTGGTCAGC 58 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000072206,ENSRNOT00000076142 3 2 3 82 1 32574331 32581224 CGTCAGAAAGAGGTGAATGAG 59 32581267 32581286 GCTATGATACGATGGTCCAC 58 NA Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 3 1 1 81 18 15918302 15918321 TACCGAGTTCTGAGCTTGAC 60 15915133 15918258 TCATCACAGTGCCTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000043306,ENSRNOT00000077017 2 2 2 60 10 70424381 70424401 TTAAGAAGTTCCTGCAACCTG 59 70424341 70424362 TCATCATAGTGACCATCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dos ENSRNOG00000024349 ENSRNOT00000060690 1 1 1 60 7 12437420 12437440 AGGTCAAGAAATGGAAGTTGG 59 12437462 12438759 GAACCTCTCGTGTCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07049401.1 ENSRNOG00000037977 ENSRNOT00000057774 3 1 1 80 5 120740728 120740749 ACTTAGACATCTCCAGCATCTC 60 120739805 120740687 TTCAGGCATCTGAAGAGCT 59 NA Rattus norvegicus 81 Map3k2 ENSRNOG00000014089 ENSRNOT00000060996 1 1 1 80 18 25016133 25016151 TGATACCGGACGAGAACTG 59 25016193 25017144 AGTGCATTTACTTCCTTGCTG 59 NA Rattus norvegicus 81 Ccdc92 ENSRNOG00000021691 ENSRNOT00000032739 2 1 1 95 12 37232828 37232846 GAACCTGCTCTTCCTCCAG 60 37232902 37233619 TATGTTAGATCTGTGCAGTGCT 60 NA Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 1 2 2 80 17 6730558 6730576 TTCTCCACTGCCAGTTCTC 59 6730616 6731535 GACTTCTAGATCTAACTCTGGGC 60 NA Rattus norvegicus 81 Kpna5 ENSRNOG00000030109 ENSRNOT00000046268 2 1 1 80 20 32513732 32513751 TCCTCAAGAGATGCGAAGAC 60 32513793 32515313 CGTTTGAACAACTGCTCCTC 60 NA Rattus norvegicus 81 LOC691196 ENSRNOG00000037027 ENSRNOT00000040763 3 1 1 107 5 166295435 166327430 CAGTCTGGATGTTTACCATGG 59 166294255 166294274 ATAACAGGATGACGGTGGTC 60 NA Rattus norvegicus 81 Rn60_10_0698.9 ENSRNOG00000051182 ENSRNOT00000076370 1 1 1 60 10 70075566 70075584 GATTGGTGAAGTCCTAGGC 58 70075608 70075626 GGACCACATAAGCAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr132 ENSRNOG00000013914 ENSRNOT00000018613 2 1 1 87 6 137654432 137658392 ATGCAACAGGAAATGCCAC 59 137654363 137654381 CTCTCCTCGTAGGACAACG 59 NA Rattus norvegicus 81 Krtcap3 ENSRNOG00000047941 ENSRNOT00000073236 3 1 1 114 6 26486163 26486266 GGGACTACTGAGCGTTACC 60 26485946 26485964 AGACAAGAGCAGGTTCACC 60 NA Rattus norvegicus 81 Rtn4r ENSRNOG00000030920 ENSRNOT00000051037 2 1 1 60 11 86993153 86993171 TTAGAGGGTTGTGCTGTGG 60 86993111 86993129 CAGTGAGCTGATTGGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC103169.1 ENSRNOG00000054122 ENSRNOT00000088247 2 1 1 60 7 9103929 9103949 CCTTAAACCATCAGTCAAGCA 59 9103889 9103909 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1565 ENSRNOG00000048434 ENSRNOT00000044043 2 1 1 60 11 85158502 85158521 TGGGAACTACACTTTCAGCA 59 85158542 85158562 TGTCTTGGAAGAAGAGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1565 ENSRNOG00000048434 ENSRNOT00000044043 3 1 1 60 11 85159163 85159182 ACTGTCTTCCAAATGCAGTC 59 85159202 85159223 GGAATAAACAGGTGGATAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008379.1 ENSRNOG00000053756 ENSRNOT00000047109 2 1 1 60 2 55108993 55109012 AGTGTGGAGTTATAAGCCCT 58 55108952 55108971 TTCTGCCACTTCTCTAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834,ENSRNOT00000047602 2 2 2 60 1 264094101 264094598 GAGATTTCCAGCAAGTGTGG 59 264094621 264094639 CCTGATGTCTCCAGGAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Fam150b ENSRNOG00000005154 ENSRNOT00000006921 2 1 1 83 6 49826197 49828212 GAGAGTGGAGATTGTTCCTC 57 49828335 49828356 TTCGGACTGAAATAAAGAGGAC 58 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 3 2 2 80 10 88699366 88699463 ACTTCAGAAACATGTCCCTG 58 88699305 88699324 TTGTGAACTTCTCTTCCGTG 58 NA Rattus norvegicus 81 Hmgb2l1 ENSRNOG00000033321 ENSRNOT00000046874 1 1 1 60 11 49708821 49708840 ACAAAGCTCGTTATGACAGG 58 49708780 49708801 CCTTTCTTATCACCTTTGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dr1 ENSRNOG00000000070 ENSRNOT00000000080 2 1 1 83 14 1631591 1631609 TATCTTCCGAAGCCAACGA 59 1625630 1631547 AACTTTCTAGTGCTTGGATGAC 59 NA Rattus norvegicus 81 Samd8 ENSRNOG00000013236 ENSRNOT00000018023 1 1 1 80 15 2689989 2690399 TCTTTGTCACAGAATATACGCC 59 2689930 2689951 AGAAGATTCCAAAGAGGTTGAG 58 NA Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 3 1 1 86 1 213745008 213745574 CTGGTCCACTCTGTCAAGG 60 213744940 213744958 GTAGCACTTGGCTTTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lemd3 ENSRNOG00000024027 ENSRNOT00000039532 3 1 1 80 7 63001185 63002404 GTGCTTAGGTGTAGTCCTGG 60 63001124 63001143 TGCCTTGTCTCTTCTTCCTC 60 NA Rattus norvegicus 81 Moxd1 ENSRNOG00000015321 ENSRNOT00000061234 3 1 1 80 1 22150890 22178158 GCATCATGTGATAAAGGTGG 57 22150829 22150847 CTGCATTGATACAGCAGGA 58 NA Rattus norvegicus 81 Zyg11b ENSRNOG00000010859 ENSRNOT00000014436 1 1 1 80 5 127872876 127872895 TGCAATTTGTAGGTTTGCTG 58 127867079 127872835 CTCCAGATACCTTCAAGTGTC 58 NA Rattus norvegicus 81 Zyg11b ENSRNOG00000010859 ENSRNOT00000014436 2 1 1 80 5 127873572 127878372 ATAGCTCTTCATGGTCTCCTG 59 127873512 127873530 AATGCAAGCTCGCTTTAGG 59 NA Rattus norvegicus 81 AC141516.2 ENSRNOG00000057036 ENSRNOT00000089423 2 1 1 80 11 87296492 87296934 CCATACAGTGCTACTGCGA 60 87296977 87296996 TATTCTGATGATGGGAGCCC 59 NA Rattus norvegicus 81 LOC100911597 ENSRNOG00000049236 ENSRNOT00000037611 3 1 1 80 7 119013505 119013523 TCTGAACGACAACATTGCC 59 119011751 119013462 ATTCGATCCACATCCTTCCA 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 2 2 2 80 10 107313685 107313703 ATGCACATGAATTCCTGCG 59 107312551 107313641 TCTGCCGATCCAACTTAGC 60 NA Rattus norvegicus 81 Elf4 ENSRNOG00000005352 ENSRNOT00000044487 2 1 1 80 X 135247402 135247420 GCATCATAAGGGACAGGAC 58 135247001 135247359 ACACATTGTCATCTGTCAGC 59 NA Rattus norvegicus 81 Gtf3c6 ENSRNOG00000000586 ENSRNOT00000000716 2 1 1 97 20 45353034 45353156 ATATGAAGATACTCTTGGGACCTG 60 45350426 45350445 GGCATTTGTACTTCAGCACC 60 NA Rattus norvegicus 81 RGD1310641 ENSRNOG00000009061 ENSRNOT00000051243 2 1 1 80 5 50185153 50185172 ACATGTTAAAGGAAGCGCTG 59 50184687 50185114 CACAGGTGATTATATCTGACAGG 59 NA Rattus norvegicus 81 Stam2 ENSRNOG00000027447 ENSRNOT00000037857 2 1 1 80 3 38241289 38241308 ATTCTCCAGAGCATAGACCC 59 38239997 38241249 CATCTGTTGGCAAATATCTTCC 58 NA Rattus norvegicus 81 Rpl7l1 ENSRNOG00000016269 ENSRNOT00000021803 3 1 1 87 9 16511460 16511478 CGTCTTTGTCAAGGTCACC 59 16511526 16512684 AGACTTCAGATTTGGAAATCCC 59 NA Rattus norvegicus 81 Ogn ENSRNOG00000047786 ENSRNOT00000072490 1 1 1 105 17 15456945 15456963 ATTGATGCTGTACCACCAC 58 15454291 15456877 TTAAGTTAGGCATGTCTGCA 57 NA Rattus norvegicus 81 Vom2r80 ENSRNOG00000055298 ENSRNOT00000086274 2 1 1 80 1 65115387 65196403 AGGAAGTACACAGATGCCA 58 65196446 65196465 GGCATTCCATTCTTCCAGAC 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286 2 2 3 82 6 100002767 100010500 GTTTCAATCTGCGGCTGAC 60 100002703 100002724 TGTGAAAGCTGTCTTTGATGTG 60 NA Rattus norvegicus 81 Tmem225 ENSRNOG00000054439 ENSRNOT00000084164 2 1 1 82 8 44002316 44002604 AGTTTCTTCACAGGTTGCC 58 44002648 44002668 ACGAAGTACACATACTGACCT 59 NA Rattus norvegicus 81 Mapk8ip2 ENSRNOG00000032828 ENSRNOT00000055792 3 1 1 81 7 130432282 130432305 TGATGAAGACCTATCTGAGATCAC 60 130432345 130433591 GAGACTGTCCTTCTCGCAG 60 NA Rattus norvegicus 81 LOC100363232 ENSRNOG00000033165 ENSRNOT00000050837 1 1 1 60 5 126691235 126691254 AAGCCTTTGGCAAGTATTCC 59 126691194 126691212 TCTCTGGACTTGCAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006,ENSRNOT00000046611 3 2 2 82 1 87201459 87202102 CAACTATGAAGAATACTGTGTCCC 59 87201400 87201421 TTTCAACATCATAGTACCAGCG 59 NA Rattus norvegicus 81 Mir20a ENSRNOG00000035605 ENSRNOT00000053728 2 1 1 60 15 100180347 100180368 ACTAAAGTGCTTATAGTGCAGG 58 100180388 100180407 ACTGTAAGTGCTCGTAATGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rac3 ENSRNOG00000048172 ENSRNOT00000073886 1 1 1 95 10 109905885 109905903 AAGGACACAATTGAACGGC 59 109905960 109906118 GTACTTGACAGAACCGATCTC 58 NA Rattus norvegicus 81 P2ry6 ENSRNOG00000019270 ENSRNOT00000050227 2 1 1 114 1 165974713 165975734 ATGAGACAGATTCTCCAAGC 57 165974618 165974636 GAAATCCTCACGGTAGACG 58 NA InUTR Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 1 4 4 80 20 4583703 4583721 GGAAGAGGAGGAAGAGGAG 58 4583765 4583867 CTAGAGCCACTCCTGTCTG 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 3 4 4 80 20 4591626 4591815 CTTAGACAACAAGGATGGTGAG 59 4591855 4591874 CACAGGTGGTTAATGAAGCG 60 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910,ENSRNOT00000076336 1 3 3 80 X 70974879 70974897 TGGACCTCATGTCAATCGG 60 70974365 70974836 GGTCAGGCTGATATCTGAGG 60 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000044325,ENSRNOT00000019319 3 2 2 80 1 4802188 4810362 AGGGTCAGATTAAGGTCATACG 60 4802129 4802149 GCACAAACTCATTCTCTTTGC 59 NA Rattus norvegicus 81 dsr-2 ENSRNOG00000060470 ENSRNOT00000080308 1 1 1 62 6 112526811 112526832 GTGTGATATGTTTGTGTTGTGC 59 112526770 112526793 CCTACATTTATGGTCATGTACACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584,ENSRNOT00000078650 3 2 2 80 2 124166673 124166691 GGAGCTCAAAGTGAAGTGG 59 124166735 124168801 TTCACTTCCTTCTGAGCCA 59 NA Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000088314 3 1 2 83 9 15389770 15389790 GTGGACTGTGAAACTTACCAC 59 15380772 15380790 CAGTCACTAGCTACCACAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dusp7 ENSRNOG00000010789 ENSRNOT00000014770 1 1 1 89 8 115071380 115071398 TCACCTACAAGCAAATCCC 57 115071451 115073966 GGGCTTCATCAATGAAGCT 58 NA Rattus norvegicus 81 Tshz3 ENSRNOG00000013938 ENSRNOT00000018931 3 1 1 98 1 92708024 92774931 AGCCTATGTTTCCGATGAG 57 92707944 92707963 ATATACTTGGCTGAAGGCTC 57 NA DesignNoJunction Rattus norvegicus 81 Mir3546 ENSRNOG00000035583 ENSRNOT00000053706 2 1 1 60 15 33613477 33613497 CGTCTTATACGTGAGAGTCAG 58 33613519 33613537 TTACTTCCTTTGACGGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpp6 ENSRNOG00000030547 ENSRNOT00000045773 3 1 1 80 4 4033914 4037405 GTGGAAGATTACAGCTTGCC 59 4033853 4033873 CACGAGCAATAAAGGGTAGTG 59 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 1 2 2 95 8 116885170 116887269 GACTAGGTAGCCAGGTGTC 59 116885093 116885111 GAAGGTGAGCTTCCTCTGG 60 NA Rattus norvegicus 81 Zbtb41 ENSRNOG00000011137 ENSRNOT00000015596 2 1 1 80 13 56530765 56532445 CTCATACAGGCTTCACTTACG 59 56532487 56532505 TGGCGAATGAATGTCTTCC 58 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 3 2 2 80 7 117057213 117057682 GTTTGAGTCCATGGACACC 59 117057726 117057744 AAGATGCAACGTTTGTGGA 58 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 2 2 2 89 8 49096434 49096725 ACATGATCTGTGCCATCCT 59 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 1 3 4 80 10 23952934 23969021 CTGGAGTGAGTTGATAACTCCT 59 23969061 23969080 AATGTGACTTCCACAACACC 59 NA Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 1 2 2 85 5 133872161 133875346 GGAGATAACGGATGGTCCC 59 133875395 133875413 CATTCACATTCTGCTGCCT 59 NA Rattus norvegicus 81 Lrrc40 ENSRNOG00000011555 ENSRNOT00000015434 3 1 1 80 2 264880757 264882888 TATTAGTAGTCTGCCCTGCTC 59 264882926 264882948 CGAATGGTTCTTAGAGGATTTCC 59 NA Rattus norvegicus 81 Asb4 ENSRNOG00000009197 ENSRNOT00000012657 1 1 1 80 4 30492243 30498144 GTTCCACAAGGTGATCCAG 58 30498188 30498206 CATCTGATGTGCTCGTAGG 58 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 1 1 2 60 18 17550590 17550611 CAAAGCTTCTCCTTAAACAGCA 60 17550626 17556811 CTTAACCAATTGTAATCTAGTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 Rasa1 ENSRNOG00000029185 ENSRNOT00000046251 1 1 1 80 2 13618120 13619490 GATGAACTTGGGAATGTACCT 58 13618060 13618078 CAATGCTGCTAAGTCACGA 58 NA Rattus norvegicus 81 Vstm4 ENSRNOG00000020078 ENSRNOT00000027198 1 1 1 80 16 9099795 9099814 TGCAAGAAATCAGCAAACTC 57 9099855 9116888 GGGAGATCACTCTCATTTCTG 58 NA Rattus norvegicus 81 Rab44 ENSRNOG00000001869 ENSRNOT00000002553 2 1 1 81 20 6409156 6409174 GGATTTCCTTCGGTGAGTG 58 6409219 6410112 ATCTTAAGTGACCGAGCCA 58 NA Rattus norvegicus 81 Slc34a1 ENSRNOG00000015262 ENSRNOT00000033749 1 1 1 80 17 9759056 9759180 GCTTATCATCCAGCTGGAC 58 9758994 9759013 CGAATGAGACTGTGATTCCT 58 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287,ENSRNOT00000040740 2 2 2 80 1 261425655 261425673 TGTGCTATACCTGCGAGTC 59 261425715 261427013 GAAGAGCACCATAGAACTGTG 59 NA Rattus norvegicus 81 Tmsb10 ENSRNOG00000036921 ENSRNOT00000055447 1 1 1 70 7 122433134 122433152 CTTCGATAAGGCCAAGCTG 59 122433186 122433204 CAATGGTCTCTTTGGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smco4 ENSRNOG00000011162 ENSRNOT00000014827 2 1 1 93 8 14060555 14060573 AAATCAGTTGACCCACGTC 58 14079308 14079326 CTTGAAGAAAGGGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Bhlha9 ENSRNOG00000022232 ENSRNOT00000032934 2 1 1 64 10 63499141 63499159 GAAGCGTTTAATGCTCTGC 58 63499095 63499113 ATCTTGGAGAGCCTCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub1 ENSRNOG00000032778 ENSRNOT00000051783 3 1 1 80 3 120374800 120376400 TTTAGAAGGCTTCCTCATTTGG 59 120374741 120374762 TGGAAGATTATGACAATCCGGT 60 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 3 2 2 80 16 48341958 48342374 CCAGTGGATTCAGGAACGA 59 48341896 48341916 CAGAAGATGTCAGTCATCCCA 60 NA Rattus norvegicus 81 Snai2 ENSRNOG00000047699 ENSRNOT00000073049 2 1 1 81 11 90406693 90406713 CGTCAAGAAACATTTCAACGC 59 90405964 90406654 GAGGTATGGAGAAATGATCACTG 59 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000091565 2 1 2 61 9 16530126 16530144 TGTCCATCTGAAGCATGGG 60 16536300 16536318 GAGCCAAAGAAGGAAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC103689982 ENSRNOG00000052600 ENSRNOT00000090873 3 1 1 80 1 64032777 64032901 CCTCTTTAAGAAAGCTGGACC 59 64032942 64032961 CCACAGGTGAATAAGGTGAG 58 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 1 2 2 82 2 95021080 95025900 CGGGAACTTACTAAGGTGGA 59 95025945 95025963 TTGATCTCCGCAAGATGCT 60 NA Rattus norvegicus 81 AABR07052130.1 ENSRNOG00000008501 ENSRNOT00000011239 1 1 1 95 3 38280644 38280662 AGGCCTGAAGAAGATGCAG 60 38280912 38280930 TTAGGCTTGATGGCCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000088261,ENSRNOT00000085235 1 2 2 80 5 135152559 135153133 TCCTCATTCCTTCAGAACAC 57 135152498 135152516 ATGATGGGTTGGATGACTG 57 NA Rattus norvegicus 81 Mir1949 ENSRNOG00000044615 ENSRNOT00000069882 1 1 1 60 18 28353165 28353183 ATAGCTGGTTGGCATTCTG 58 28353201 28353225 CATCCTGGTATAGTTAACAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909464 ENSRNOG00000016849 ENSRNOT00000022862 3 1 1 80 9 16605528 16605737 CCTGCCTTGAAAGATTCGC 60 16605781 16605799 GTCAAAGAGGACACAGCAC 59 NA Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000019473 2 1 2 159 17 13802803 13812448 AGAACGAGAGCCTGTTTCC 60 13802662 13802682 TGCCATGACTTCCTATAGACG 60 NA InUTR Rattus norvegicus 81 Olr1084 ENSRNOG00000051708 ENSRNOT00000083548 2 1 1 60 7 13632668 13632686 GTTCAAGGGAAGCACAAGG 59 13632707 13632728 ATAAGGAGACAATGGAAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1084 ENSRNOG00000051708 ENSRNOT00000083548 3 1 1 60 7 13632433 13632454 CATCCTCCATGCCTTATTACAG 59 13632475 13632493 CACATCTCCACAGAAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgbp ENSRNOG00000019129 ENSRNOT00000057122 3 1 1 82 1 85035560 85035582 AGTGTCACTCTGCATATCTATGG 60 85035623 85036081 ACGAACTCTCCATTCACCTG 60 NA Rattus norvegicus 81 Atp6v1g3 ENSRNOG00000022480 ENSRNOT00000029679 2 1 1 80 13 55284074 55287158 AGTCTAAGATAATGGGCTCTCAG 59 55287194 55287216 CGCTCAATTCCTTTATCTTCTCC 60 NA Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 1 2 2 81 9 16819536 16819554 AAAGGAGAACATAGCACCC 57 16819262 16819491 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 AABR07025051.1 ENSRNOG00000042099 ENSRNOT00000065453 1 1 1 89 16 26593403 26593424 GCAGAGGCCTACTGTATCTG 60 26593473 26593494 CACAATGATGTAGGAAGGACAG 59 NA Rattus norvegicus 81 Wdr78 ENSRNOG00000006999 ENSRNOT00000046691 1 1 1 80 5 122569798 122569817 TTGGTGTCTATATCAGCCGA 58 122569214 122569756 CAGGTGCATCAAATCATGAC 58 NA Rattus norvegicus 81 Hpd ENSRNOG00000001338 ENSRNOT00000001809 2 1 1 80 12 38836153 38837706 AAGACATCATCACAACGATCC 59 38837746 38837766 GCAGTCTGTAGTAAGAAGACG 58 NA Rattus norvegicus 81 Proca1 ENSRNOG00000023381 ENSRNOT00000037048 3 1 1 80 10 65465868 65467942 TTCTGAAGGTGAGAACAAGG 58 65467983 65468003 GAGAAGGAGTGGATGATATGC 58 NA Rattus norvegicus 81 Fcgbpl1 ENSRNOG00000042899 ENSRNOT00000057120 1 1 1 80 1 85062481 85068029 TCGCCAAGATCAACTACCA 59 85068073 85068091 GTGTTCCACTCTGGTACAC 58 NA Rattus norvegicus 81 Cecr6 ENSRNOG00000046851 ENSRNOT00000074558 2 1 1 61 4 153027163 153027183 TCTACTCCATCGCTTTCACTC 60 153027122 153027140 GAGGTCCAGGATGGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689599 ENSRNOG00000012115 ENSRNOT00000016155 1 1 1 80 9 114784637 114784656 TGTCAGAGCAGAAGTGAAGG 60 114754971 114784594 AGTTGGAAGTTCCCTTCGT 59 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000085954 2 1 3 63 1 199060239 199060258 CCATACATCTGTGCTGACTG 59 198895476 198895494 TGACTTGGTGCTGAGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Pcdh15 ENSRNOG00000000606 ENSRNOT00000067633 1 1 1 80 20 15275769 15279488 AAAGACATAGAAGACGTGCC 58 15271664 15271683 CGAGGTGTAATCATTCAGGA 57 NA Rattus norvegicus 81 Vom1r107 ENSRNOG00000042090 ENSRNOT00000065474 1 1 1 60 7 18068440 18068461 CTTCCAAGCAATCACAATTACC 58 18068478 18068500 GACTCTGTGTTTAAGCATCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r107 ENSRNOG00000042090 ENSRNOT00000065474 2 1 1 60 7 18068482 18068502 GATGCTTAAACACAGAGTCAC 57 18068521 18068542 CATAAGCCAGTTTAATGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 3 2 2 80 18 27097240 27097258 TCATTGAAAGTGGAGGTGG 57 27097300 27098770 CTCTTAGGATTTGTCTGTGGT 58 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501,ENSRNOT00000045647 1 2 2 60 7 130542283 130543210 GATAACACCACGTGTGATGG 59 130543233 130543251 TACCTGCTTGTGGGTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Mtcp1 ENSRNOG00000024071 ENSRNOT00000033663 1 1 1 108 18 411786 411804 CACTGTGAGGGTGTCTACC 59 411580 411598 CCAGAGGAACTGGAACTCG 60 NA DesignNoJunction Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 1 2 2 89 5 4971313 4971333 ACTTAAAGAAAGCAGGAGGAG 58 4959567 4971263 GGACAAACCAATACCTTGTG 57 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385,ENSRNOT00000067528 3 2 2 80 10 55539384 55539403 GTCCTTTCTCCGTGTATGTG 58 55538828 55539342 CGTTTGTATCCATAAGGCGG 59 NA Rattus norvegicus 81 Pddc1 ENSRNOG00000045795 ENSRNOT00000073220 3 1 1 82 1 213953639 213954395 TCCACTCTGAGAGCAAACC 59 213953575 213953595 CCAGGACCTATCTTCATTGGT 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000080590,ENSRNOT00000060327 1 3 7 80 20 4087729 4087747 GTTGCTAACAGTGCTGAGC 60 4091565 4091586 CACTCGGATTTATACTGTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000080091 1 1 7 63 20 4087729 4087747 GTTGCTAACAGTGCTGAGC 60 4087774 4089341 GAAATCACTCATCCGCGTG 59 NA DesignRelaxed Rattus norvegicus 81 Amigo2 ENSRNOG00000007032 ENSRNOT00000009199 1 1 1 60 7 138705810 138705828 TGACTGTTCCCTGTACTCC 58 138705768 138705787 CGTCACAGAGTTAAAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem179b ENSRNOG00000019341 ENSRNOT00000065694 2 1 1 84 1 224972556 224972771 AATGCTGAAACCTCTTCTTGG 59 224972492 224972510 TCGCTTGAAACTTGCACTG 59 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 2 2 2 80 6 135786707 135786725 GAGGTTCTACATTGGCGAG 58 135780462 135786664 TCGGGTTTAATGTCTCTGTG 58 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 2 2 2 80 12 39587623 39587645 GGTTGTACTTCTGTTATCTGCTC 59 39587683 39589329 CAGAATGAACATCCTGCAGAC 59 NA Rattus norvegicus 81 Klhl17 ENSRNOG00000020302 ENSRNOT00000027547 1 1 1 80 5 173658719 173658738 GAGATCCGTGCTCATAAGGT 59 173658570 173658679 GCTCTCACTCATCTCATTTGTG 60 NA Rattus norvegicus 81 Mir148a ENSRNOG00000046475 ENSRNOT00000073699 1 1 1 60 4 81013323 81013344 CAAAGTTCTGAGACACTCTGAC 59 81013284 81013304 ACAAAGTTCTGTAGTGCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir148a ENSRNOG00000046475 ENSRNOT00000073699 2 1 1 60 4 81013319 81013339 TTCTGAGACACTCTGACTCTG 59 81013279 81013300 TAGAGACAAAGTTCTGTAGTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpin3 ENSRNOG00000016636 ENSRNOT00000022403 2 1 1 80 3 156893475 156893493 TTATAACTGGGCTGTGGCT 59 156893537 156895290 TTGTCCACAGTGCTCTCAG 60 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 2 2 2 80 2 22073908 22073926 GTGGTGTTCAATGGTGCTC 60 22070369 22073867 TTGAACCATTAAGCCATCTTCG 59 NA Rattus norvegicus 81 Naglu ENSRNOG00000032381 ENSRNOT00000052157 1 1 1 98 10 88979712 88979730 GTCACATAGCCTGGTCCAG 60 88979792 88980472 AATAGCGGTACCTGTTGGG 60 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000067311,ENSRNOT00000089310 2 2 2 80 17 15772423 15772443 CTCTTCTATCTACCGCTTCCA 59 15772485 15774793 GGCTTTGTATCCCACTCCT 59 NA Rattus norvegicus 81 Stra8 ENSRNOG00000010573 ENSRNOT00000014093 1 1 1 80 4 62470770 62473300 ACTCCATTAAACCAGGAACCA 59 62473341 62473360 TTCATCATCGAAGGTCTCCA 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000085873 2 1 18 81 1 43508704 43508723 GAGTCCGTCAGAACACTAGG 60 43508765 43510405 GTTTCAAATTGCTTGCTCTGG 59 NA Rattus norvegicus 81 Spem1 ENSRNOG00000015419 ENSRNOT00000020675 3 1 1 151 10 56429431 56429538 ACTTAGTGACCCTGCTCTG 59 56429127 56429145 ACATCGGAGATGGACTTCG 59 NA Rattus norvegicus 81 LOC100911859 ENSRNOG00000016141 ENSRNOT00000021589 2 1 1 114 7 144566001 144566019 GAGAACACGAATCCCAGCT 60 144567371 144567389 ATTTCGAATAAGGGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Runx3 ENSRNOG00000054217 ENSRNOT00000086650 3 1 1 60 5 153526878 153530612 AATCCAAGGCTCCTCAGAC 59 153530636 153530654 GAAGGAGCGATCAAACTGG 59 NA DesignRelaxed Rattus norvegicus 81 Nfil3 ENSRNOG00000011668 ENSRNOT00000015525 2 1 1 177 17 12261220 12274492 CTGGCAACCTTGGATAACC 59 12274633 12274651 CTGCATCAGAAAGGACCTC 58 NA InUTR Rattus norvegicus 81 LOC302999 ENSRNOG00000020212 ENSRNOT00000027371 1 1 1 69 10 15310052 15310070 AAACTTGGCTGTCAGAGCA 60 15309723 15309741 CTGGTTCCTTGTCCTCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 2 2 2 80 4 168616028 168616047 CAGTACTTGGAGGAGTTGGT 59 168616088 168618069 CCACTGCTTGTACATTTCCAG 60 NA Rattus norvegicus 81 Ubp1 ENSRNOG00000009729 ENSRNOT00000013050 3 1 1 80 8 122229209 122229227 GTGAATAACAGCCCTTCCC 58 122229271 122231140 TGAAGAATTGCTGTCTGGG 58 NA Rattus norvegicus 81 Arl6ip1 ENSRNOG00000017751 ENSRNOT00000024648 1 1 1 81 1 187777007 187777025 CTGACAAAGTCCTTCGGTG 59 187776498 187776965 TAGATAATCAGGAACAGCAGGG 60 NA Rattus norvegicus 81 Arl6ip1 ENSRNOG00000017751 ENSRNOT00000024648 3 1 1 87 1 187777013 187777031 TGATGGCTGACAAAGTCCT 59 187776498 187776965 TAGATAATCAGGAACAGCAGGG 60 NA Rattus norvegicus 81 AABR07021066.1 ENSRNOG00000039332 ENSRNOT00000060277 3 1 1 81 13 55701239 55701258 GAAGAGGAGGAAGAAGATGG 57 55701141 55701196 CATCCTCAGCTTTATCTCCG 58 NA Rattus norvegicus 81 Rbm33 ENSRNOG00000006718 ENSRNOT00000033377 1 1 1 80 4 667262 667281 AAAGCCAAACCACTTAGTCC 58 667319 669906 CTCTTCATCTTCATCAGGAAACTC 59 NA Rattus norvegicus 81 Nlgn2 ENSRNOG00000015430 ENSRNOT00000056872 2 1 1 81 10 56435498 56435516 TCACCATCTTTGGGTCTGG 59 56435326 56435453 TTCTGGAACAGCCCTTCTG 60 NA Rattus norvegicus 81 LOC100912418 ENSRNOG00000048642 ENSRNOT00000074198 1 1 1 60 4 170117220 170117238 ATTACCAAGCCCGCTATCC 60 170117178 170117196 GACCTGAGATACGCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911305 ENSRNOG00000048668 ENSRNOT00000070844 3 1 1 60 9 61825064 61825084 GTGTTTGGAACTTTGCTTCAG 59 61825104 61825124 GTCTTGACAGCAACTTATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000048908 3 1 2 106 6 142635627 142635726 CAGCTACATGTGTCCACTC 58 142635539 142635557 GAATGTGTAGCCAGAAGCC 59 NA Rattus norvegicus 81 Ctnnbl1 ENSRNOG00000012021 ENSRNOT00000066808 1 1 1 80 3 154351412 154353348 ACAGTGAGAAGGTCGACAG 59 154353390 154353410 CTTCAATCTTCTTGTCAGCCA 59 NA Rattus norvegicus 81 RGD1562963 ENSRNOG00000039379 ENSRNOT00000060340 1 1 1 80 17 21604709 21608984 AGACTTTCTCAGAGACCCA 57 21609028 21609046 TAGAGCTCTTCCCTTACGG 58 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000049799 ENSRNOT00000047974 2 1 1 60 10 44174799 44174817 ATTTCTGTCACTGTGCCCA 60 44174757 44174775 CTGAGATCCTGTGGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dld ENSRNOG00000006364 ENSRNOT00000008980 1 1 1 80 6 50612465 50612485 TGTGACAGTGATAGGTTCTGG 60 50611120 50612425 ATGCAGACTGTCTTAAAGCCT 60 NA Rattus norvegicus 81 LOC100909954 ENSRNOG00000048986 ENSRNOT00000075676 2 1 1 60 6 129320400 129320418 TCTCTTCTCCTTGCAGCTG 59 129320442 129320460 GTCCTCATTGGGTGAGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl4 ENSRNOG00000011406 ENSRNOT00000015199 1 1 1 80 10 70885291 70885988 CCAGCTGTGGTATTTCTGAC 59 70886028 70886049 ATTCACATACTCATTGACCCAG 58 NA Rattus norvegicus 81 Ccl4 ENSRNOG00000011406 ENSRNOT00000015199 3 1 1 80 10 70885292 70885989 CAGCTGTGGTATTTCTGACC 59 70886029 70886050 CATTCACATACTCATTGACCCA 59 NA Rattus norvegicus 81 Rnd3 ENSRNOG00000004624 ENSRNOT00000006111 1 1 1 80 3 36648990 36649008 CAGATTCTGATGCTGTGCT 58 36646370 36648949 CACCTTTCCACTTCTTTAAGAC 57 NA Rattus norvegicus 81 Olr1536 ENSRNOG00000053715 ENSRNOT00000081508 2 1 1 60 11 45687776 45687798 CTTCTCTTCATGTATCTGCTTCC 59 45687738 45687757 AGTCCATCATGTCTTCATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sostdc1 ENSRNOG00000005770 ENSRNOT00000008106 2 1 1 80 6 55813025 55813044 AACAGCACCTTGAATCAAGC 60 55813084 55815662 CACTTGAACTCGACTATTTCGA 59 NA Rattus norvegicus 81 Slc30a9 ENSRNOG00000002246 ENSRNOT00000065550 1 1 1 80 14 42478822 42478841 CCTCAACCAATGGAATCCCT 60 42475194 42476230 AACGAGAAGTGTTGCTCCT 59 NA Rattus norvegicus 81 Ubald2 ENSRNOG00000010029 ENSRNOT00000013359 2 1 1 82 10 105393377 105396564 CCGCAGATGATGTGTACTC 58 105396610 105396628 CGAAGCTTGGAGAACATGG 59 NA Rattus norvegicus 81 Slc6a11 ENSRNOG00000005697 ENSRNOT00000008342 3 1 1 80 4 146110216 146110237 CCATCTTCTACTTAAGCAACTG 57 146110277 146113928 CACATTTCTCTGTGTTCCAC 57 NA Rattus norvegicus 81 Gprc5d ENSRNOG00000008439 ENSRNOT00000011141 3 1 1 106 4 168882572 168882590 GATGGAGAACCAGGAACCC 60 168873178 168874646 TGGGATCAACAGTCTGCAG 60 NA Rattus norvegicus 81 Nudt14 ENSRNOG00000014362 ENSRNOT00000019550 2 1 1 96 6 137741839 137742271 ACACATGACAGTGTGACGA 59 137741550 137741568 CTACCTCGCCTGCATAGAC 60 NA Rattus norvegicus 81 Prpf40a ENSRNOG00000004864 ENSRNOT00000006549 1 1 1 80 3 38684214 38684233 AAAGACAGAAGTAGGCAGAG 57 38682929 38684172 ATCCCAGTTACCAGAATCCT 58 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 2 2 2 80 17 9625116 9626019 TACTTCAAGAGGTTCTGTTTGG 58 9626060 9626078 CTTGAGGCTGAAGTTGGTC 59 NA Rattus norvegicus 81 Mir455 ENSRNOG00000036266 ENSRNOT00000054389 1 1 1 60 5 79097222 79097240 TGCCTTTGGACTACATCGT 59 79097264 79097282 GAGGCAAGTGTATATGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp33 ENSRNOG00000011294 ENSRNOT00000066125 1 1 1 80 2 257580855 257580874 CCACGTTTATCAGCAAGTCC 59 257580915 257584413 TGAAGACTGAGCTTTCTTGTG 59 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 1 2 2 80 10 90379806 90379824 CCTGATGGCTACTCTTGTC 57 90379866 90380008 ATCATCACAAGATACACCCTC 57 NA Rattus norvegicus 81 Zfp647 ENSRNOG00000050651 ENSRNOT00000075636 3 1 1 82 7 118515001 118517484 GGAAGTGATCACTCAGAATGC 59 118514939 118514958 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 RGD1565159 ENSRNOG00000048753 ENSRNOT00000049363 3 1 1 60 2 53717938 53717958 AAGAGTCTACAATGTCACCCA 59 53717898 53717919 GCCTTTAACTTGCTTGTTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex19 ENSRNOG00000022572 ENSRNOT00000032563 1 1 1 80 18 71607625 71608349 CGATCTTATGCAGCAGTTACAG 60 71607404 71607422 TCAAAGTTGAGGCCAGGAG 60 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 2 1 2 137 7 54012507 54012525 AAGTGAAACATCGCACTCC 59 54022613 54024193 CAGATTGAGCTTCACTTCCA 58 NA Rattus norvegicus 81 Nsdhl ENSRNOG00000057814 ENSRNOT00000091154 2 1 1 80 X 152957637 152959640 CAGGAAAGAGCAGTACTGGA 59 152959682 152959701 GCCAAATATGCCATGAGGAC 60 NA Rattus norvegicus 81 Orai1 ENSRNOG00000001336 ENSRNOT00000001806 3 1 1 180 12 38995300 38995324 CGGACTGGACAGAGTTACTC 60 38982632 38982650 AGTCATGATCCGTGTCCAG 59 NA Rattus norvegicus 81 Snrpn ENSRNOG00000059764 ENSRNOT00000077253 3 1 1 84 1 195078754 195078772 CATTGGCACCTTTAAGGCT 58 195078180 195078709 ATTCTTTGGCTTGATCTTCCTG 59 NA Rattus norvegicus 81 Fam228a ENSRNOG00000050114 ENSRNOT00000070908 1 1 1 85 6 30087014 30088270 CAAATGAACCGACCAAACCA 59 30088318 30088336 GTAACTGGGTCCCTTTGCT 60 NA Rattus norvegicus 81 Tmem167a ENSRNOG00000016686 ENSRNOT00000022377 1 1 1 100 2 18937514 18937532 GTGTGCTTATGTGCGATCC 59 18940039 18943502 TCTTGCGTTCACCAATTCG 59 NA Rattus norvegicus 81 AABR07065651.2 ENSRNOG00000047641 ENSRNOT00000075175 2 1 1 80 6 138764645 138764665 CCTATACCTGCAAATGGACAC 59 138764542 138764606 TGGTCACTAGTATCTGTGTCTG 59 NA Rattus norvegicus 81 Vom2r75 ENSRNOG00000022955 ENSRNOT00000036914 2 1 1 80 18 35117 35137 TTACAGGACCACATTGGAGAG 60 33278 35077 AAAGCTGAAGGAAATGTGGAG 59 NA Rattus norvegicus 81 Bbs10 ENSRNOG00000026913 ENSRNOT00000039096 3 1 1 102 7 54031548 54031924 CTTAGCCAGGATGATAGTGG 57 54031988 54032007 AAGTCCTCTGAGTAAATGGC 57 NA Rattus norvegicus 81 Trim68 ENSRNOG00000047229 ENSRNOT00000075222 3 1 1 80 1 167840649 167843037 GAGTATAAGTGGAAACTCCAGC 59 167840590 167840609 CTCACTGACTTCCAGTTTCC 58 NA Rattus norvegicus 81 Prp15 ENSRNOG00000028983 ENSRNOT00000045884 1 1 1 81 4 166222501 166224139 GGAAGCAGAACTTCAGAGC 59 166224184 166224202 ATTAGCAGGTGGTCTTGGT 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 1 1 1 60 5 135396664 135396686 GAGTAGAAACCAGAATGCTTCAC 60 135395774 135396647 AGTATCTTTGAAGATGCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mpst ENSRNOG00000000185 ENSRNOT00000000201 3 1 1 123 7 119627167 119627186 ATCCTGGAGAACTTGGATGC 60 119630844 119630862 TTACTGAGCCAGGGATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem116 ENSRNOG00000027480 ENSRNOT00000067503 1 1 1 80 12 40564427 40564445 GACGCCTGTGTTCTTTCTG 59 40563334 40564385 GAGTGCATTAGCATACACCTG 59 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 2 2 2 80 7 41186208 41189738 CTTCTTTCAGGTACTCATGTAATGG 60 41189774 41189794 GATCCCAGTTTGAGAGTTCAC 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 1 2 2 80 8 85503240 85503260 AGCTCTACTACTTTCAAGGCA 59 85503300 85504613 CTTCTTCAAACTCCACTCCAG 59 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000015365 ENSRNOT00000020669 1 1 1 80 9 88481177 88481734 GACAAGACCTTGGTACTCTG 58 88481776 88481795 ACACGTTATCGACGTTACAG 58 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 2 2 2 80 X 14965037 14965150 GATATCTTTGGGTTTATTGGCTCC 60 14964980 14965000 TACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Rph3a ENSRNOG00000001368 ENSRNOT00000001844 1 1 1 80 12 41147550 41148044 AATGATTACATCGGAGGCTG 58 41148085 41148105 GTTCTTCAGACACTCATACCA 58 NA Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000075284 1 1 2 108 6 138550442 138550544 GACATTTCCAAGCTGTGCC 60 138550352 138550370 TGAGAAGCCAGAGACAGTG 59 NA Rattus norvegicus 81 Rfxap ENSRNOG00000028382 ENSRNOT00000000101 2 1 1 87 2 144215271 144217039 AAACTGGAGGAAAGCACAG 58 144215202 144215221 ATAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 3 2 2 89 8 22985428 22985446 CCTGGAGAAGCACAATGTG 59 22981357 22985375 TCAGGAATCAGGAGCTCTC 58 NA Rattus norvegicus 81 Sertm1 ENSRNOG00000014046 ENSRNOT00000018780 2 1 1 277 2 144322453 144322471 GGAGCTTTCTTAGCTTCCC 58 144306203 144306221 CCTGCAAATCCAGATGAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nxnl2 ENSRNOG00000014538 ENSRNOT00000019489 2 1 1 86 17 14058393 14058411 GAGATGCTGGACTTCATGC 59 14054469 14058343 CCTCTTCTTCAGCTCATGC 58 NA Rattus norvegicus 81 Olr1541 ENSRNOG00000029104 ENSRNOT00000043299 2 1 1 60 11 43340885 43340906 CAAACCTTTACTTTACCCAGTC 57 43340924 43340945 CATTGTTAGAAGACGTACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt21 ENSRNOG00000042983 ENSRNOT00000026297 1 1 1 80 19 11451533 11451555 CCAATTCGGTAACAAGTACATCC 60 11451593 11455344 TAGTTGGTAAGTGGGTACAGG 59 NA Rattus norvegicus 81 Crebbp ENSRNOG00000005330 ENSRNOT00000007079 2 1 1 80 10 11678988 11680451 AATGCTCTAGGAAACAACCCA 60 11680491 11680511 TTCTGAAATCAAGTTTGGCGG 60 NA Rattus norvegicus 81 Idnk ENSRNOG00000019519 ENSRNOT00000026407 2 1 1 81 17 6889534 6889555 CTATGATGCCGATGATTACCAC 59 6887055 6889494 AATCCTGTCCTGGTCATTCAG 60 NA Rattus norvegicus 81 LOC100361515 ENSRNOG00000017915 ENSRNOT00000024348 2 1 1 80 10 56617616 56617951 GCGAGAGTTACCTAGTTAACCT 59 56617992 56618010 GAGGAGCCAGAGTATCCTG 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 2 2 2 80 1 133375598 133375622 CTCTTTCTGTACAACTTCCTTAGAC 59 133372426 133375563 CTCTATGTCTGTGCTATCCTGG 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713,ENSRNOT00000065521 3 2 2 87 13 69778366 69780803 ACCCTAAGTACTTAGAGATGATGG 59 69778302 69778322 TCCATGAGATCCAGGTAAACC 59 NA Rattus norvegicus 81 Dusp11 ENSRNOG00000022082 ENSRNOT00000036247 1 1 1 80 4 117803567 117803801 GTCGTGTCAGAAAGAACCAG 59 117803506 117803527 GGACTTGTTCTGTAAGATGTGC 60 NA Rattus norvegicus 81 RGD1304624 ENSRNOG00000006986 ENSRNOT00000009180 2 1 1 81 6 75953851 75959547 CGGTGACAGAATAAAGGTGC 59 75953789 75953810 ATTCATTACAATGATGTCGGCG 60 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 2 2 2 80 8 118621892 118621911 AGAACGTAGCAACTGAACTG 58 118621953 118622584 CAAAGAGGCAGAACTCTTGG 59 NA Rattus norvegicus 81 Zscan18 ENSRNOG00000026861 ENSRNOT00000036880 2 1 1 80 1 65852198 65852219 ATCCTGAGAATTGCAAGAAAGC 60 65852257 65852818 AACACAACATCATTCCTGACTC 59 NA Rattus norvegicus 81 Ssbp2 ENSRNOG00000016213 ENSRNOT00000021857 2 1 1 80 2 20681830 20686158 TAGTCCAGCAGATTCAACCA 59 20686201 20686219 TTAGGTCTGTTAGGCCCAG 58 NA Rattus norvegicus 81 Olr1223 ENSRNOG00000051138 ENSRNOT00000076963 2 1 1 60 8 41303176 41303194 TGACATCTTCCCTCTCCTC 58 41303214 41303236 GCTCATAAGCTCATTGACATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a35 ENSRNOG00000004668 ENSRNOT00000006597 1 1 1 85 10 55557907 55558236 CAGTGGGAGATCTTTCCTCC 60 55558284 55558302 GTCATGGCCAGGACTACTG 60 NA Rattus norvegicus 81 Aldh1a3 ENSRNOG00000052070 ENSRNOT00000085158 3 1 1 80 1 127322233 127330016 ATCCTGGCAACTCTAGAGAC 59 127322172 127322191 CTTAATACAGCCCTCCAGGT 59 NA Rattus norvegicus 81 Vom2r1 ENSRNOG00000048575 ENSRNOT00000075323 2 1 1 80 10 111552460 111561234 GAGAAACATTGGTTCCCTCC 59 111552399 111552419 TGGCTGTTTGTTTCTGATGAC 60 NA Rattus norvegicus 81 Tmem161b ENSRNOG00000032414 ENSRNOT00000050072 3 1 1 80 2 12519829 12529149 AAGTGGATACTTTAGCACTGC 59 12529190 12529209 AATACACAACAGTAGCAGCC 58 NA Rattus norvegicus 81 A2m ENSRNOG00000028896 ENSRNOT00000019346 3 1 1 80 4 154348003 154348025 GTAGAAGATGAAGTCACCTTGTC 59 154348064 154348988 GACAACAGGATGAGTGACAG 58 NA Rattus norvegicus 81 Cd207 ENSRNOG00000013222 ENSRNOT00000017691 3 1 1 82 4 115352531 115352549 GAACACAAAGGTCCAGGGA 60 115351511 115352488 TCATCTCCAGAATGTCACTCTG 60 NA Rattus norvegicus 81 MGC94207 ENSRNOG00000045765 ENSRNOT00000021775 1 1 1 80 7 117788389 117788408 ACTATGTGGATCACCAAGGC 60 117787726 117787916 ATTGCAGGTCTTTGAAGCAG 59 NA Rattus norvegicus 81 Aldoart2 ENSRNOG00000030869 ENSRNOT00000043224 2 1 1 60 6 76350223 76350242 AGTCACTTTCCTGTCTGGAG 59 76350263 76350283 GATAGCATTGAGGTTGATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipi ENSRNOG00000033441 ENSRNOT00000045835 3 1 1 81 11 13980252 13980274 CCTACAGAGATTACAAGAGTGGT 59 13978245 13980213 GCTTGAATACCAAGTCTTGGG 59 NA Rattus norvegicus 81 LOC688981 ENSRNOG00000032000 ENSRNOT00000046585 3 1 1 60 6 96202116 96202135 CACAAGAAGATCCTGGAGAG 57 96202075 96202094 ATTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam6 ENSRNOG00000037524 ENSRNOT00000056829 3 1 1 60 6 138434458 138434479 CTTGCTCCCAAACTAACTTCTG 60 138434498 138434518 TCCAACCGAGATAAACTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wipi1 ENSRNOG00000003827 ENSRNOT00000005172 1 1 1 80 10 97891136 97896382 AAGACTGCACATCCCTAGC 60 97891074 97891092 CTTGGTCAAGTTGCTCCAC 59 NA Rattus norvegicus 81 LOC100911758 ENSRNOG00000049320 ENSRNOT00000072554 1 1 1 60 4 1356390 1356410 TCCTGCAGTAACACCTATGTC 60 1356432 1356450 TGATACCTGTACCCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911758 ENSRNOG00000049320 ENSRNOT00000072554 2 1 1 60 4 1356570 1356593 GTTAGTTTCTTCTATGGATCTGGG 59 1356612 1356630 CAGTCTCAGCAGAAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam174b ENSRNOG00000012369 ENSRNOT00000016481 2 1 1 89 1 135126257 135126275 CTGAACGTGTGGAAATGGC 60 135126322 135162482 GTTCATGTTCTCTGTATCTGATGTC 60 NA Rattus norvegicus 81 AABR07065889.1 ENSRNOG00000047011 ENSRNOT00000046694 1 1 1 60 6 143768722 143768741 ACACAGCCTACATGGAACTC 60 143768681 143768699 GCACAGTAATAGACCGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Opn1mw ENSRNOG00000051529 ENSRNOT00000083147 2 1 1 80 X 156576518 156576537 CCTACCATCCTACTTTGCCA 59 156569783 156576475 CAATTTCGAAACTGCCGGT 60 NA Rattus norvegicus 81 Wdr1 ENSRNOG00000028498 ENSRNOT00000024012 1 1 1 80 14 77004396 77004415 GGAAGATCAAGGACATAGCC 58 77004458 77005514 CAGCTCCAAATTTCTCCCT 57 NA Rattus norvegicus 81 A1cf ENSRNOG00000033195 ENSRNOT00000067643 3 1 1 80 1 250481660 250484177 GCTGCCAGGAAGAATTCAG 59 250484220 250484239 GTGTCTTCGTCAACTTCGAC 59 NA Rattus norvegicus 81 Dennd2a ENSRNOG00000026748 ENSRNOT00000034549 2 1 1 80 4 67245775 67248248 CCTCAGACAGATGGAGGAC 59 67245713 67245732 TTCCTCTGCTCCAGAATGTG 60 NA Rattus norvegicus 81 Dmrtc2 ENSRNOG00000020109 ENSRNOT00000027242 2 1 1 82 1 81737765 81737784 GAAAGGAGAACATAGCACCC 58 81737829 81738058 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 Senp6 ENSRNOG00000024336 ENSRNOT00000015741 1 1 1 80 8 87540324 87542100 CAGGATAACGAGTTTAGAAGAACAG 60 87542138 87542156 TCAAAGACCACATCTGCCT 59 NA Rattus norvegicus 81 Dennd5a ENSRNOG00000012206 ENSRNOT00000017485 2 1 1 80 1 174527982 174528518 CCAACAATAAGCCCAAGCTG 60 174527921 174527939 GGAAGTGCTTCACAATGCC 60 NA Rattus norvegicus 81 LOC100911617 ENSRNOG00000048996 ENSRNOT00000075181 1 1 1 60 2 213420557 213420575 CTTCTGCGCTACAAAGTGG 59 213420515 213420533 AGTCCTCCATGGCAAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 1 2 2 82 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821384 144826170 CGATATCATTGCTTTGCTCTC 58 NA Rattus norvegicus 81 Kcnf1 ENSRNOG00000024310 ENSRNOT00000033327 1 1 1 60 6 42472908 42472929 TATACTATTTCGGTGAGGTCCA 58 42472869 42472888 TCGTTCTTGAAGCAGATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnf1 ENSRNOG00000024310 ENSRNOT00000033327 2 1 1 60 6 42472184 42472202 CATCTTCGTCTTCTCCGCA 60 42472142 42472160 GAACAGAGTTTCAGGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tecta ENSRNOG00000031126 ENSRNOT00000052293 3 1 1 80 8 46611167 46611665 GTGAAGCCTATGCTAAGTGTC 59 46611107 46611127 TTTATAGAGCGCCATCTTGGT 60 NA Rattus norvegicus 81 Pptc7 ENSRNOG00000021440 ENSRNOT00000036137 2 1 1 60 12 39734187 39735079 CGGATTAAATGTGAGAGGTGG 59 39734147 39734165 AGCCACTATTGAGAGGAGC 59 NA DesignRelaxed Rattus norvegicus 81 Pptc7 ENSRNOG00000021440 ENSRNOT00000036137 3 1 1 61 12 39734187 39735079 CGGATTAAATGTGAGAGGTGG 59 39734146 39734164 CAGCCACTATTGAGAGGAG 57 NA DesignRelaxed Rattus norvegicus 81 Armc1 ENSRNOG00000013253 ENSRNOT00000018548 1 1 1 82 2 103963282 103963300 GAATGTCGTGCGAACAGAG 59 103957213 103963238 GTTGTAGTCTTCTGGATGACG 59 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 2 2 2 81 4 148401775 148402037 AGAAAGGCCTCAGGTTTCC 60 148401712 148401730 AGGCTGTGAAGATCACCAC 60 NA Rattus norvegicus 81 Rn60_1_1373.2 ENSRNOG00000051334 ENSRNOT00000076469 3 1 1 60 1 136285232 136285254 CAGTTAGATACTACACCAAGGTC 58 136285274 136285292 ATCCTGAGTTCTTTCAGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 1 2 2 80 14 71877481 71884738 GGTCTCAGGGTTCTGACTC 59 71884781 71884800 ACCAGTTACAGTCAGACAGC 60 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000080202,ENSRNOT00000034283 1 2 2 87 16 8637299 8638583 TACTACAGGCTTTACCAGAGAC 59 8637233 8637251 ATCTGATGTTGTCCACCCG 60 NA Rattus norvegicus 81 Slc13a4 ENSRNOG00000011184 ENSRNOT00000059892 1 1 1 80 4 62799348 62800552 TCCTATGTACCCTGTCCGA 59 62799286 62799306 CAGCAAAGGAGATAGACATGG 59 NA Rattus norvegicus 81 Fan1 ENSRNOG00000023985 ENSRNOT00000031067 1 1 1 80 1 125203827 125203845 CCGAATGGAGTTTCCTCAG 58 125201452 125203785 GCTGCGTATCTGATAAGATCC 59 NA Rattus norvegicus 81 Ccnh ENSRNOG00000031656 ENSRNOT00000049423 1 1 1 93 2 13612391 13612410 CCAGATCTGAAGAAGTTGCT 58 13612463 13612833 CCTTTCCTCTTCTTTGTAACCA 58 NA Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000076039 1 1 2 80 1 166670565 166676989 CAAACACCTTCTCAGCAGG 59 166670503 166670521 CTTCCACAGACTCAACCGT 60 NA Rattus norvegicus 81 Tktl1 ENSRNOG00000055557 ENSRNOT00000091029 3 1 1 80 X 156532773 156532791 GCTCAAGTAAGAGGCAAGC 59 156531104 156532731 TTCTGCATCCTCAACATTTGG 59 NA Rattus norvegicus 81 Foxc2 ENSRNOG00000047446 ENSRNOT00000072369 3 1 1 64 19 53045414 53045434 GAAGAAAGTGGTGGTCAAGAG 59 53045460 53045478 TCTCCACCTTGGTGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000052029 2 1 3 80 1 66010533 66011112 CCGGTTATCATTGCTTCTTCC 60 66011151 66011172 ACAAAGACAGACACTACCTCAG 60 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 1 2 2 81 4 169147344 169175827 TACTCCAGAATTCTCTACTCAGG 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Acbd6 ENSRNOG00000003550 ENSRNOT00000004772 2 1 1 80 13 73255328 73265728 ATGACAGATGAAGAGGGCAG 60 73265769 73265789 CTGTAGCAAGACTTTCACCAG 59 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018928 ENSRNOT00000025586 1 1 1 91 1 84723296 84731823 GAGCCCAGAATTGGAAACAG 59 84723224 84723242 GCTTTACCCTCTGTTTGGG 59 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 3 1 1 96 X 15324584 15325008 TGCTGAGGTACTTGCTAGG 59 15324506 15324524 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Prokr2 ENSRNOG00000021266 ENSRNOT00000028889 3 1 1 80 3 125009947 125016816 GCTATTGACAGATATCTCGCT 58 125009887 125009905 CAAAGCGATCAGGAAGGAG 58 NA Rattus norvegicus 81 Gzmm ENSRNOG00000030530 ENSRNOT00000011086 3 1 1 83 7 12894512 12894531 CCTTCTACATCAAGCAAGCC 59 12894353 12894466 GTCCATCCAGCTTAAGCAG 58 NA Rattus norvegicus 81 Rn60_8_0402.2 ENSRNOG00000051359 ENSRNOT00000077043 2 1 1 60 8 40198946 40198965 CTAAAGTCTTCCCAGTGTCC 58 40198905 40198923 CTCCATAGAAACCCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkk2 ENSRNOG00000001309 ENSRNOT00000001774 1 1 1 80 12 39280640 39280660 AGGTGTATCAGGAAATTGCCA 60 39280702 39284854 TAGGGTCATCCAGGACCTC 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078690 2 1 5 80 4 164893888 164893907 TGCATTGGTTATGCTATGGT 58 164893824 164893848 TCTGGCAGGTTATACATTTACG 58 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 2 1 1 77 16 14320959 14323462 TTTGATGTGTTGGCCTTGC 60 14323503 14323521 GTCTACCAGTTGAGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Timm17b ENSRNOG00000025156 ENSRNOT00000037066 3 1 1 102 X 15346145 15346163 ATTGTGGATGATTGTGGCG 59 15343544 15346079 GGTGTCGAATTCCAACAGG 59 NA Rattus norvegicus 81 Hspb9 ENSRNOG00000036819 ENSRNOT00000055248 3 1 1 60 10 88620883 88620901 CTCAAGGATGATCTGGCTG 58 88620923 88620943 TCATCTGGAAACTTGGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa13 ENSRNOG00000060979 ENSRNOT00000081096 2 1 1 80 11 14150689 14150707 GTCATTTCTGTGCCAGCAG 60 14149370 14150646 GATCTTCAGTCCAGCAAGGT 60 NA Rattus norvegicus 81 Enthd1 ENSRNOG00000025344 ENSRNOT00000034912 3 1 1 80 7 121728139 121728158 CTCTGACCTCTCCTACTTCC 58 121692424 121728097 GAGTAGACACAGCTTCTGTG 58 NA Rattus norvegicus 81 Herpud2 ENSRNOG00000029995 ENSRNOT00000046432 1 1 1 80 8 26290141 26290160 GTACTCTTCCACAAGCACAG 59 26271156 26290099 ACTGGTGATCCACATTTCCT 59 NA Rattus norvegicus 81 Mir3561 ENSRNOG00000045781 ENSRNOT00000071252 3 1 1 60 7 26427793 26427811 CCTGAGACTGTGTCAATCC 58 26427751 26427770 TACCCTGGATAGACACAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000055290 3 1 2 190 7 144778334 144778485 TCCATACCAGGTCACAACG 59 144778162 144778180 GGGTTGTAGATGACACCCA 59 NA InUTR Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 1 2 2 80 7 54910514 54910535 TTATGGAGAATTCAAACGTGCC 60 54910575 54912744 AATTTCATGAAGGCCTTGCG 60 NA Rattus norvegicus 81 Olr927 ENSRNOG00000048132 ENSRNOT00000050751 2 1 1 60 7 16305389 16305408 GTCTGTTTGAAATTGGCTGG 58 16305431 16305449 TCTGGGCTGATTCTACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ust5r ENSRNOG00000061890 ENSRNOT00000051289 1 1 1 80 1 224525970 224526080 CTTGCTCATGTTTGAATGGAC 58 224525910 224525928 CTTCCAAAGCTACCAGCAC 59 NA Rattus norvegicus 81 AABR07027342.1 ENSRNOG00000024499 ENSRNOT00000072904 3 1 1 80 17 25344569 25344587 TCACGATGGGACTATGGAC 59 25344631 25350572 CATTATGTGCAAGCCTCCC 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 2 1 2 97 10 88537805 88538475 CCATGTTGTGGGTTCTGAG 59 88538535 88538554 CATAGAAACGCACCTGTTCC 59 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000078718,ENSRNOT00000012354 3 2 2 80 3 21629774 21629792 CTGTCGATTCAAGGTGGAG 58 21629463 21629731 TAACAATGAATCTGTCCCGT 57 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 2 3 7 80 19 15170538 15172216 TGCCAACAATGATGAACTATCC 59 15172254 15172275 AAGAAGACTTCTTCAAGAGCGA 60 NA Rattus norvegicus 81 Adam4 ENSRNOG00000038275 ENSRNOT00000008367 3 1 1 60 6 105158543 105158563 CGGAAATGGGACTTGTATTGG 59 105158503 105158524 TGAGCTTTACAGAATTTGCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin3a ENSRNOG00000005723 ENSRNOT00000007957 2 1 1 80 5 64970903 64970923 TTTATGGATGTGCTCCATGAC 59 64936597 64970861 TTGCAAAGTCTCAGTGACG 58 NA Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000013569 3 1 2 81 4 61924604 61939862 CATCTAGAAGGTATCTCAGACGA 59 61939903 61939921 TCTCATCCAACTCCAGCAG 59 NA Rattus norvegicus 81 Ctla2a ENSRNOG00000039971 ENSRNOT00000061422 2 1 1 80 17 4170979 4170998 AAACGACTCATGATTTGCCC 59 4171040 4171363 CTTACTCTGGCTGATCCCTC 59 NA Rattus norvegicus 81 Runx2 ENSRNOG00000020193 ENSRNOT00000061014 1 1 1 80 9 18660834 18718040 GAACCAAGAAGGCACAGAC 59 18718084 18718102 AATGCGCCCTAAATCACTG 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 1 3 3 138 1 168964654 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 2 2 2 92 10 36590562 36590580 ACCAAAGGTGATCTCCCTG 59 36590636 36598159 CTGCACTTCAATCCGAGAG 58 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742,ENSRNOT00000076341 2 2 2 80 16 84850586 84850604 GTTCCTAGCTTAGCACAGG 58 84842312 84850542 CAGAGGACTGAGCTTACTG 57 NA Rattus norvegicus 81 AABR07065886.2 ENSRNOG00000046401 ENSRNOT00000051410 1 1 1 82 6 143701895 143701996 TAACTGCTGGTGTCCACTC 59 143701831 143701850 GGACATCTTTACTGAAGCCC 58 NA Rattus norvegicus 81 Dnajc10 ENSRNOG00000006803 ENSRNOT00000009839 2 1 1 80 3 67540031 67540052 AGCAGAGAAATAAGACAAGCCT 60 67540091 67541444 ATGTGCATTTGGGTTATTCGG 60 NA Rattus norvegicus 81 Mroh9 ENSRNOG00000003698 ENSRNOT00000004931 2 1 1 80 13 80944568 80944587 GGACAAGGTGATCTACTCCA 59 80939305 80944527 ATGCCACCATTAACATGATCC 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 3 2 2 80 14 66742813 66744685 CTACATCACTAAAGAGGAAATGCTG 60 66744723 66744741 TTGAGGACAGGGTATGTGC 59 NA Rattus norvegicus 81 F13a1 ENSRNOG00000015957 ENSRNOT00000021568 2 1 1 80 17 28580340 28580361 ACATCGGAGTGATATTTCATGG 58 28580401 28583722 GGATGCCATCTTCAAACTGG 59 NA Rattus norvegicus 81 Strap ENSRNOG00000007134 ENSRNOT00000009923 3 1 1 80 4 171734425 171734444 TTACCTGTTGACTGGAGGAC 59 171734485 171736060 CTAATTTCCTTGGGTTCTGCT 58 NA Rattus norvegicus 81 Fam60a ENSRNOG00000046048 ENSRNOT00000075027 1 1 1 80 16 18450948 18450966 ACTCTGTCTGGAAACAGGA 58 18451010 18453298 AGCATCAGAATCTGCTGTG 58 NA Rattus norvegicus 81 Sarm1 ENSRNOG00000010244 ENSRNOT00000013639 1 1 1 80 10 65757409 65757690 AGAACTTTCGGGATCAGCA 59 65757347 65757365 TCATGCCTAGGTCTGTCTG 59 NA Rattus norvegicus 81 Pde6h ENSRNOG00000005947 ENSRNOT00000007905 2 1 1 85 4 170960867 170962779 CTAGGAACAGATATCACGGTG 58 170962826 170962844 CAGATGATCCCGAACTGAG 57 NA Rattus norvegicus 81 Bmp15 ENSRNOG00000002984 ENSRNOT00000003989 3 1 1 92 X 17017389 17021030 CTTCTCAGAGGTCCTTGGC 60 17021086 17021104 GTAGACCACAGTGGCTCTG 60 NA Rattus norvegicus 81 Vom2r16 ENSRNOG00000054736 ENSRNOT00000080747 1 1 1 80 1 62848042 62848062 TATTCAAGTGGGAAACAGCTC 58 62848103 62851633 CACAGAAGATGGCATCTGTC 59 NA Rattus norvegicus 81 Ccdc97 ENSRNOG00000020675 ENSRNOT00000028065 3 1 1 80 1 82505459 82506678 CTTTGACTACAGCACGGTG 59 82505397 82505418 AAGTATCGATCCTCCTCATCAC 59 NA Rattus norvegicus 81 Nqo2 ENSRNOG00000017820 ENSRNOT00000024141 3 1 1 80 17 32137374 32137395 GACCAGTGACATACTTGAAGAG 59 32136160 32137337 CTGAACCAGTATAGTGGAAACTG 59 NA Rattus norvegicus 81 Tmem151b ENSRNOG00000019958 ENSRNOT00000031706 2 1 1 166 9 17844055 17844073 AATGGAGATGCCTACACGA 59 17844915 17844933 CTGAAGCACTTGGTGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Best3 ENSRNOG00000005491 ENSRNOT00000007309 3 1 1 80 7 60033740 60033758 AATCTTGCAACCAAAGCCC 59 60033800 60035146 CCGATTCATTTCGGTCATCAG 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410 3 2 6 95 20 4612465 4613894 CTCTGGCATTCAGAAACAGC 60 4613952 4613970 CTGAGGAGACAGAAGACCC 59 NA Rattus norvegicus 81 Ncapg2 ENSRNOG00000004968 ENSRNOT00000035255 3 1 1 80 6 144315763 144318780 GAACGCCAGTGTACTAGAC 58 144318822 144318842 AGGATCACGATGATTTCTAGC 58 NA Rattus norvegicus 81 Sh3rf1 ENSRNOG00000010358 ENSRNOT00000013816 2 1 1 80 16 32120861 32120881 CAGTGCAAAGCACTTTATGAC 59 32120397 32120820 TACGTCATCCTTTGCAAAGG 59 NA Rattus norvegicus 81 Rn60_1_1354.1 ENSRNOG00000051332 ENSRNOT00000076660 2 1 1 67 1 134335898 134335917 TTAAGCAGCATGAACGACTC 59 134335850 134335868 TAGGCATCACCCATCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685,ENSRNOT00000078530,ENSRNOT00000088002 1 3 4 80 12 38446623 38446642 AGAAATCCATCAGCCTCACC 60 38446685 38446782 GCACTGTGACCTCATTCCT 60 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788,ENSRNOT00000040482 3 3 3 80 3 48295612 48295630 ACTCAACAGTCATGAGCAG 58 48295282 48295571 GAACATTATCATCTGCTGTACC 57 NA Rattus norvegicus 81 Dmap1 ENSRNOG00000019407 ENSRNOT00000026336 1 1 1 80 5 136535833 136540403 AGGTTCAATAAGACAGTACAGG 58 136535774 136535793 CTTAGTCCATGCATCATCGT 58 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157,ENSRNOT00000066711 3 2 2 80 1 204271815 204273953 GAAGCGCTTTGGAATTGTC 58 204271753 204271771 AAGTCAAAGAGGTCCAGGT 58 NA Rattus norvegicus 81 Usp16 ENSRNOG00000001598 ENSRNOT00000002173 2 1 1 80 11 27110308 27110327 TGAAGCACTACACAACACCA 60 27110370 27111963 ACTTGTAACACCAGACGCT 59 NA Rattus norvegicus 81 Apba2 ENSRNOG00000016358 ENSRNOT00000022049 3 1 1 80 1 125532435 125532454 GACACTGACAGAAGTAGACC 57 125532497 125534428 TCCATCATGGTTTCCTGTG 57 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 1 1 1 66 2 25225110 25235101 GGACCCAACAGTAAAGGGA 59 25225062 25225080 CTTTCCCAGTGATGGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Lhpp ENSRNOG00000017097 ENSRNOT00000022971 1 1 1 80 1 204641640 204641658 GAACAGAGCCTTCCAAGTG 59 204641700 204648284 GTCTCCTTGTAATAGCGTCCT 59 NA Rattus norvegicus 81 Il17a ENSRNOG00000012467 ENSRNOT00000016664 2 1 1 80 9 26841370 26842474 GAATTCCATCCATGTGCCTG 59 26842517 26842535 TTTGAGGGATGAGTACCGC 60 NA Rattus norvegicus 81 F2r ENSRNOG00000048043 ENSRNOT00000074626 3 1 1 84 2 26122019 26135190 ACAGCCAGAATCTGAGAGG 59 26121953 26121973 ATCTTCACTGGGATTCCTGAG 59 NA Rattus norvegicus 81 Mlxip ENSRNOG00000001255 ENSRNOT00000001690 3 1 1 80 12 38573049 38573618 TGGCTGCATTAAAGAACCG 59 38572987 38573006 GAGTGTTAAAGCCCATCCTG 59 NA Rattus norvegicus 81 Fam46a ENSRNOG00000010240 ENSRNOT00000056937 2 1 1 80 8 92940149 92941195 CTCTCAAGGAAGCGTATGTG 59 92940088 92940109 TGTTTGACAGGGATATAAGGCT 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 3 1 1 60 2 140708481 140721854 AGAATATTTCGCGCACAGC 59 140721876 140721896 ACAGCGATATGATGAATACGG 58 NA DesignNoJunction Rattus norvegicus 81 Cdc7 ENSRNOG00000002105 ENSRNOT00000068520 3 1 1 88 14 3835587 3836374 TGCAGAGAAACTCATCAAGC 59 3835518 3835536 CAGCCTTTGTAGAAACGGC 60 NA Rattus norvegicus 81 Pebp1 ENSRNOG00000001136 ENSRNOT00000001500 2 1 1 83 12 45028174 45028471 CAAATTCAGGGAGTGGCAC 59 45028518 45028536 ACGTATTCGGAGAGGACAG 59 NA Rattus norvegicus 81 Mpc2 ENSRNOG00000003150 ENSRNOT00000004206 2 1 1 80 13 83697317 83697335 CTGGATTAGCTGACATGGC 58 83697376 83698395 AAATAAACCCTGTAGCCATCAG 59 NA Rattus norvegicus 81 Wdr81 ENSRNOG00000003243 ENSRNOT00000004365 2 1 1 80 10 62283336 62283356 AGACAGAGAAGAGGAAGAGGA 60 62282542 62283294 TTGCAGGCTGTATCAAGGA 59 NA Rattus norvegicus 81 Ccdc107 ENSRNOG00000017253 ENSRNOT00000023411 2 1 1 89 5 58995629 58995647 TGCTGTTCAAGTGTTTGCA 59 58997149 58997248 GCTGTTGTTCTGACTGTGAG 59 NA Rattus norvegicus 81 LOC297568 ENSRNOG00000042228 ENSRNOT00000041957 2 1 1 80 4 154810347 154811059 CTTAGTCCAAACCCAACAAGAG 59 154810288 154810308 AACTGGATCTTTAGGTGGTGG 60 NA Rattus norvegicus 81 Fbxo36 ENSRNOG00000017053 ENSRNOT00000022901 1 1 1 80 9 92435931 92435950 GAAATTGTAGGACAAGGCCC 59 92435988 92477214 CCATCTAAAGATGATCTGAGTTCG 59 NA Rattus norvegicus 81 AABR07036505.1 ENSRNOG00000052647 ENSRNOT00000041732 2 1 1 80 12 45319939 45320513 TTCTGTCTACATACAGAAGCCT 59 45320640 45320664 TGAAGTATGTGTACCTAGAGAAGAC 60 NA Rattus norvegicus 81 Cacna1f ENSRNOG00000010348 ENSRNOT00000066489 3 1 1 80 X 15715979 15716389 ACATACAAAGACTCCATAGACTCC 60 15715922 15715945 TTTCTCCTTAACTGGTAGAGACAC 60 NA Rattus norvegicus 81 Snhg11 ENSRNOG00000036802 ENSRNOT00000055200 2 1 1 106 3 154863626 154863644 ATGACGACTCAGGTTCTGC 60 154863714 154864428 CACCAAGCTGTCAATTCGG 60 NA Rattus norvegicus 81 Gps2 ENSRNOG00000016360 ENSRNOT00000022041 2 1 1 80 10 56525447 56525569 GGAACAGAGTGACTTAACCAC 59 56525611 56525629 CTGAGGAGGTGAGTTCCTG 59 NA Rattus norvegicus 81 Atxn2 ENSRNOG00000001256 ENSRNOT00000001691 3 1 1 80 12 40329498 40329517 TTCAAATGCTCAGACTTCGT 58 40307273 40329456 AGAGTCAGTGAAAGCATCTC 57 NA Rattus norvegicus 81 AABR07011951.1 ENSRNOG00000034093 ENSRNOT00000047593 3 1 1 60 2 177652027 177652047 GTCAACCATTTCATTGCTGAG 58 177652067 177652087 TCTTGTTCTCACTGATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 1 2 2 80 1 65663872 65663890 GACATCAAGCTCTTTGGGA 58 65661741 65663830 CTTCACAGCAATGTAATCCTG 57 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 3 2 2 85 1 65661606 65661625 GTAACAACGGCAAGAAGCTC 60 65661418 65661558 CAGAGGGTTCTCACCAGTG 60 NA Rattus norvegicus 81 AABR07009890.1 ENSRNOG00000050470 ENSRNOT00000075039 1 1 1 78 2 115159310 115160088 TATGTGGTGACAGCAGTGG 60 115159250 115159268 AGTACATGGGAGTGTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 2 1 2 81 2 118989113 118989136 ATTAAGAACGATATGCACGCC 59 118989052 118989070 CTACGTAGTTCCCAGACGG 59 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 3 1 2 82 2 118989113 118989135 TTAAGAACGATATGCACGCC 59 118989050 118989068 GGCTACGTAGTTCCCAGAC 60 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 3 1 1 61 5 58416610 58416967 AAATGATACAAGGCAAGGGC 59 58416990 58417009 CCACAGGTAGTCAAGGAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ubxn2b ENSRNOG00000009137 ENSRNOT00000012551 3 1 1 80 5 19297563 19298255 ATCAGCTGCAAGATGTTCAG 59 19298298 19298316 TGTAAGGCCTCAGTTCTCC 59 NA Rattus norvegicus 81 Sgsm3 ENSRNOG00000018745 ENSRNOT00000025382 2 1 1 80 7 122230182 122230298 AGAACTGTAGTGTGGAGCTG 60 122230338 122230359 GTAAGCATGCCACATAGTTCTC 60 NA Rattus norvegicus 81 Sapcd1 ENSRNOG00000000858 ENSRNOT00000080415 1 1 1 60 20 5019705 5019945 AACTTCTTCCTCTGGCCAG 59 5019663 5019681 CAGAGCATCTTGTTCCCTC 58 NA DesignRelaxed Rattus norvegicus 81 Klhdc7b ENSRNOG00000032419 ENSRNOT00000040769 2 1 1 60 7 130357867 130357887 ACCACCAATGAGTTTAGAGAC 58 130357908 130357927 AGTTTCATCTCCTCTAGGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col9a1 ENSRNOG00000012920 ENSRNOT00000018116 2 1 1 80 9 30420782 30420914 GATGACTTGCCAGGATTTGAC 60 30420956 30420974 CACCACCCTCTGGATAGTC 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 3 3 3 80 7 2470143 2470293 GAAGAGGAGGTTGATGAAACG 59 2470333 2470353 CTTTGCTCTTGACACATTTGC 59 NA Rattus norvegicus 81 Csdc2 ENSRNOG00000005332 ENSRNOT00000007091 2 1 1 90 7 123181119 123181501 ATGTTTCTGACATCGAGGG 57 123181555 123181573 AACTTCTGGTTCTTGGGTG 58 NA Rattus norvegicus 81 Vwa7 ENSRNOG00000000860 ENSRNOT00000001153 2 1 1 80 20 5016155 5016174 GTTTCACTTCGGGATCTCTG 58 5016217 5016463 GTCTGAAGACCTGCAACTG 59 NA Rattus norvegicus 81 Stk25 ENSRNOG00000018181 ENSRNOT00000024487 2 1 1 80 9 100769089 100770009 GTCTTTGGAGAGCTCAAAGAG 59 100769029 100769047 GCTGAAGGCATTCTCTAGC 58 NA Rattus norvegicus 81 Ccl5 ENSRNOG00000010906 ENSRNOT00000014865 1 1 1 96 10 70743038 70743056 CTTTGCCTACCTCTCCCTC 59 70740090 70742978 AGTGACAAAGACGACTGCA 60 NA Rattus norvegicus 81 Ccl5 ENSRNOG00000010906 ENSRNOT00000014865 2 1 1 97 10 70743038 70743056 CTTTGCCTACCTCTCCCTC 59 70740089 70742977 GAGTGACAAAGACGACTGC 59 NA Rattus norvegicus 81 Mir30d ENSRNOG00000035611 ENSRNOT00000053734 1 1 1 60 7 109286523 109286543 AGTCTGTGTCTGTAAACATCC 58 109286483 109286501 CTGACTGAAAGCTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyyr1 ENSRNOG00000001544 ENSRNOT00000002109 1 1 1 87 11 24972622 24984190 CCATCTCCTATCCCATGGC 59 24972553 24972571 GCTGGAGAGTATGGTGGTG 60 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682,ENSRNOT00000087439 3 2 2 80 3 46894990 46895008 AGACGAACCTCTACATCCG 59 46847416 46894947 TCTTCCCGTATGGTTGACAG 60 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076758,ENSRNOT00000000787 3 2 3 80 20 21789423 21840972 ATGAGTTTGCGCCAAATCTC 60 21841015 21841033 TTGAGCCACTGAAGGAGTC 59 NA Rattus norvegicus 81 Ms4a18 ENSRNOG00000042330 ENSRNOT00000067235 1 1 1 83 1 227054350 227054369 GGAATTCATCCTCACCTGTG 58 227051428 227054305 GGGAACACTGTCATGTTCTC 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 3 5 5 80 4 176268641 176268660 AATGGCCTAGCATACATGTC 58 176266480 176268599 ATTGTGAAACACCATGTTGG 57 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623,ENSRNOT00000078559 3 2 2 80 19 60342941 60351803 CAGATGTAACGAGTTGCGG 59 60351846 60351865 CGTTCTCTGTCATCCAACTC 58 NA Rattus norvegicus 81 Tmem26 ENSRNOG00000027859 ENSRNOT00000038095 1 1 1 80 20 21667267 21673018 CCATGGAAACCAGTATTGCAG 60 21667207 21667227 AGGGTTTGATTGATGTCTCCT 59 NA Rattus norvegicus 81 Olr38-ps ENSRNOG00000055775 ENSRNOT00000083691 1 1 1 90 1 167580754 167580774 GAGAACTAAGGAACGGCAG 58 167580682 167580702 TCTCACAATCTGTGACTTCTC 58 NA Rattus norvegicus 81 AABR07064538.1 ENSRNOG00000049817 ENSRNOT00000072657 1 1 1 60 6 84293407 84293425 GGACACGACAGATGATCCA 59 84293449 84293467 ATTGGAGAGGGCTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsbn1 ENSRNOG00000019671 ENSRNOT00000026631 2 1 1 80 2 206407049 206439491 TTCATACTCAGGTCAACAGGA 59 206439530 206439551 CTGCTCCAACAAGACTTATCTG 59 NA Rattus norvegicus 81 Prss58 ENSRNOG00000013132 ENSRNOT00000017611 3 1 1 80 4 69145887 69147440 TATGTGACGTCACCAAGGA 58 69145825 69145843 AGGCATTATGACACTCAGC 58 NA Rattus norvegicus 81 Myo1a ENSRNOG00000004177 ENSRNOT00000005575 1 1 1 80 7 71013115 71013135 GGGACCCAGTTTAAGAATTCG 59 71013173 71013498 CTTTATGCACCTGATGTAGTTCG 60 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933,ENSRNOT00000031855 2 2 2 80 5 155980846 155981155 TTTCTGAGCCTAATCTCTGTCC 60 155981193 155981214 CTTGGGTATACTCTCGAAGGTC 60 NA Rattus norvegicus 81 Hspb8 ENSRNOG00000022392 ENSRNOT00000039275 3 1 1 61 12 45906052 45906073 GAAGAACTGATGGTAAAGACCA 58 45906095 45912649 TTCTCTTCGTGCTTCCCTG 60 NA DesignRelaxed Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 2 2 2 84 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122546 5122564 TTGCCAACTCTTCCATGGT 60 NA Rattus norvegicus 81 Lrpprc ENSRNOG00000005877 ENSRNOT00000008200 2 1 1 80 6 7995245 7999848 TGAAAGATTTCGCTGAGACC 58 7995184 7995202 TAACTTGCGCGATGATGAG 58 NA Rattus norvegicus 81 Sod1 ENSRNOG00000002115 ENSRNOT00000002885 3 1 1 82 11 30367700 30368667 GTACTATGGTGGTCCACGAG 60 30368712 30368730 GCTTCCAGCATTTCCAGTC 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843 2 1 3 142 4 149957229 149970694 TCGTCTTCCTGAAGGTTGAG 60 149970798 149970817 GGGAGGAAGGTAGAAGTGAC 59 NA InUTR Rattus norvegicus 81 AABR07042903.1 ENSRNOG00000030174 ENSRNOT00000043480 2 1 1 87 19 14346726 14346745 AAGACCTACAGCTACCTGAC 59 14346799 14346832 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Tiam1 ENSRNOG00000021569 ENSRNOT00000046486 3 1 1 80 11 29957479 29958562 CACCTATGTGAAGGACTTAAACTG 60 29957422 29957440 TCATCCTGGGTGAGAAAGG 59 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000034166 1 1 2 60 3 154044019 154044037 CAGAACTGCTCATCATCGG 58 154044061 154045358 GAGTACCTGAACACCTGCA 59 NA DesignRelaxed Rattus norvegicus 81 Olr1108 ENSRNOG00000010804 ENSRNOT00000014337 2 1 1 60 7 140055267 140055285 CTGAGCATGAAGTCCACCA 60 140055308 140055327 TGAGGTGAGAAGAGCAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc7 ENSRNOG00000016679 ENSRNOT00000022800 1 1 1 80 1 188219455 188222872 GCATTGAAGGGAAGTTTGG 57 188219393 188219411 ATATCACCAGGTTCAGCAC 57 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000091152,ENSRNOT00000034889 3 2 3 86 10 87350677 87350695 GTACGAAACCAATGCACCG 60 87348387 87350630 GCATCCTTAATCTGATCTTGCA 59 NA Rattus norvegicus 81 Stac3 ENSRNOG00000008050 ENSRNOT00000010639 2 1 1 80 7 70810071 70811100 GTATGCTTGTGTCTCTGCTG 59 70811142 70811161 TCCTTGTTTGCCATGATCAC 59 NA Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 1 1 1 60 3 148051633 148057399 GGAACTGGTAATGTCAGGC 58 148051591 148051609 ACAGAATCCTCTGTTGCCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364265 ENSRNOG00000012088 ENSRNOT00000072844 1 1 1 80 5 16782502 16782520 AGAGTAAGAACAAGCAGCC 58 16781992 16782460 GTAATAAATCTCCTGGTGGCA 58 NA Rattus norvegicus 81 Cds1 ENSRNOG00000002142 ENSRNOT00000002918 3 1 1 80 14 9429011 9440822 TCATCAAGATGGAAGAACTGG 58 9428951 9428975 CATATAGATGATCAGGAAGAAGAGG 58 NA Rattus norvegicus 81 Sntg1 ENSRNOG00000007294 ENSRNOT00000009679 2 1 1 80 5 10434587 10434605 GGAGAGTCACCTAATGGGC 60 10434647 10476236 CAAAGTACAGCCTTTGTTGCT 60 NA Rattus norvegicus 81 RGD1563354 ENSRNOG00000014424 ENSRNOT00000019453 3 1 1 80 3 154692778 154695032 AGTTCTTCCAGAAGCTGGAC 60 154692717 154692736 CAAACTCTTGGATGGAAGCC 59 NA Rattus norvegicus 81 Fmo3 ENSRNOG00000003620 ENSRNOT00000004864 2 1 1 80 13 80845126 80845145 TGACTGGTGGTATATGAAGC 57 80841931 80845085 CTGAGTGTTCCATTTAAAGGC 58 NA Rattus norvegicus 81 Ctr9 ENSRNOG00000017195 ENSRNOT00000023741 3 1 1 80 1 175847587 175847606 AAGAAGGACTACAGAGGAGC 59 175847648 175851179 TAGACGAACTTCAGCTGGAC 60 NA Rattus norvegicus 81 Cd68 ENSRNOG00000037563 ENSRNOT00000056918 3 1 1 80 10 56269599 56269749 TTGGATTCAAACAGGACCG 58 56269537 56269557 GGAAGGACACATTGTATTCCA 58 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 3 2 2 137 3 143807137 143807155 ACTGTCCAAGGGATCACTG 59 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Dcstamp ENSRNOG00000004704 ENSRNOT00000006243 2 1 1 60 7 78650307 78650325 ATCGAAGCCATTGAGTGGA 59 78650346 78650367 CAAGGTCATCAAGTACATTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb4 ENSRNOG00000014689 ENSRNOT00000019687 2 1 1 85 10 56383205 56383223 CTGTGAGAAGGTGTTTGCC 59 56383271 56383843 AGAAGATGCACTGGTACCTG 60 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733,ENSRNOT00000085987 3 2 2 80 20 44581246 44588537 ATATTGAACAGCTCGGAAGGA 59 44588575 44588597 GTAGTTGCTAGGAATGTAACCAG 59 NA Rattus norvegicus 81 Nuf2 ENSRNOG00000002711 ENSRNOT00000003650 3 1 1 80 13 87840916 87842540 ATTTCTACATGATGCCGGTG 59 87840855 87840873 AGAACAAATTGCTGACCGG 59 NA Rattus norvegicus 81 AABR07033590.1 ENSRNOG00000040050 ENSRNOT00000061592 3 1 1 84 11 29284273 29298099 GGTTCCAGATATGGCTGTG 58 29284207 29284225 CATAGCCAGAGCCATATCC 57 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507,ENSRNOT00000034991 1 3 3 80 6 10364247 10372395 TACTGTGATGACAGAATCTTGG 58 10372433 10372454 GTGGTAGAATTCATAGGCAGAG 59 NA Rattus norvegicus 81 Mtl5 ENSRNOG00000014671 ENSRNOT00000019861 3 1 1 81 1 218635682 218635700 AGTTCTCATCATCCCAGGA 57 218635745 218637408 AGCTGACAAATCACCATGG 58 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073 1 1 2 81 1 99532572 99532590 CCGCTGACGTGAATTTCTG 60 99532635 99533738 AAGGACACCAACCTCTCAC 59 NA Rattus norvegicus 81 Olfml2a ENSRNOG00000014034 ENSRNOT00000018853 3 1 1 80 3 23237671 23237692 TGGATCTGATGAAAGTACATGC 59 23237733 23239584 GGTTGGTCTTGATGCTCTC 58 NA Rattus norvegicus 81 Tbca ENSRNOG00000048342 ENSRNOT00000073688 1 1 1 80 2 24495036 24499662 CCATTAAGAAGCAGGCAGAG 59 24499705 24499723 TGTAAGCAGCCTCTAACCG 60 NA Rattus norvegicus 81 Pnliprp1 ENSRNOG00000017908 ENSRNOT00000024164 3 1 1 80 1 279868874 279868893 ACTCGGTTTATCATCCATGG 58 279868935 279870336 CACTTGGAACATGTTCTTGC 58 NA Rattus norvegicus 81 Ccpg1os ENSRNOG00000052869 ENSRNOT00000089949 2 1 1 84 8 79660267 79660286 TCAGACTTCTCGCTATCAGG 59 79656472 79660222 TTTCTTATCCAAGTCGCAGTC 59 NA InUTR Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000088493,ENSRNOT00000013761,ENSRNOT00000067349,ENSRNOT00000051097,ENSRNOT00000067189,ENSRNOT00000079935 3 6 6 84 5 150140519 150148642 TCATACAGGTCCATGACTCC 59 150140454 150140476 GAAGATCAACTCCATACATGGAC 59 NA Rattus norvegicus 81 Myh9 ENSRNOG00000004860 ENSRNOT00000007398 2 1 1 80 7 118762373 118762392 CTCTGAACGACAACATTGCC 60 118760620 118762331 TTCGATCCACATCCTTCCAC 60 NA Rattus norvegicus 81 Fabp12 ENSRNOG00000038825 ENSRNOT00000059326,ENSRNOT00000077782 2 2 2 82 2 93764930 93764948 AAGTTCAGGACTGGGATGG 59 93764994 93766521 ATTCACTGCACTTTCCACC 58 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653,ENSRNOT00000081878,ENSRNOT00000006727 2 3 3 80 14 72347521 72354603 GTTAAATGCAAGGAGTTATGGG 58 72339153 72339171 TGACCATCATCCAACAAGC 58 NA Rattus norvegicus 81 Baz2a ENSRNOG00000053881 ENSRNOT00000079383 3 1 1 80 7 2543505 2543524 TTTAGACGCCATTACTGGGT 59 2543565 2544510 ATCTTCAGTAACTGCACTCCC 60 NA Rattus norvegicus 81 Hspa12a ENSRNOG00000018019 ENSRNOT00000024548 3 1 1 80 1 279952073 279956609 TTGAGGAAGAGCAATGTGGA 59 279952012 279952030 GAGGGCATTCATTGCATCC 59 NA Rattus norvegicus 81 Gcn1l1 ENSRNOG00000021871 ENSRNOT00000001517 3 1 1 80 12 46740435 46740563 AGTCTAACAAGGCAATCATCAC 59 46740376 46740394 CTGAGCGGCCCATATAGAG 60 NA Rattus norvegicus 81 Irx3 ENSRNOG00000011533 ENSRNOT00000015583 1 1 1 108 19 15839664 15839872 TGGAACAGATCGCTGTAGTG 60 15839105 15839123 TAAGACCAGAGCAGCATCC 59 NA Rattus norvegicus 81 Zfp746 ENSRNOG00000007064 ENSRNOT00000009247 2 1 1 81 4 77743714 77743732 GGAAGACTGGCAGAAGGAG 60 77742850 77743669 GGAGATGGCATAGTCCAGG 59 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000077479,ENSRNOT00000051402 1 2 2 80 1 129775238 129775258 CAGACCAGAGTGTAAGAAGAG 58 129773126 129775198 TCAGCATAGGAGTCAATAAGG 57 NA Rattus norvegicus 81 LOC100911774 ENSRNOG00000045655 ENSRNOT00000070921 1 1 1 80 1 88686030 88686050 TCTACAGCAAGTTGGATCAGG 60 88683097 88685989 GGTCAATGACATGGATTCGG 59 NA Rattus norvegicus 81 Mir135a ENSRNOG00000035529 ENSRNOT00000053652 1 1 1 61 7 32894948 32894967 CACTCTAGTGCTTTATGGCT 57 32894906 32894930 CATCCCTACATGAGACTTTATTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 2 2 2 82 9 41007335 41007353 TACAAGCCCTCACAAACAC 58 41007398 41008032 TTGCCACAGATTTCCTTCTG 59 NA Rattus norvegicus 81 RGD1562084 ENSRNOG00000015201 ENSRNOT00000020410 3 1 1 82 8 59955905 59955923 CTGCTGTAGACCTCTCCAC 59 59955968 59972521 CAGCCAGTTAGACCCTTCTC 60 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 2 2 2 93 13 89300246 89300761 CTGTCCAAGAGTTGTTCGC 59 89300171 89300189 TTTGTCTCACAGCTCAGGG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 1 5 10 82 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000085389,ENSRNOT00000014230,ENSRNOT00000083233 1 6 10 86 10 87122195 87126965 CCCAGACGATTATGATGACG 58 87122128 87122146 AGGATCTCACTGATGAGGC 59 NA Rattus norvegicus 81 Ndufs2 ENSRNOG00000038372 ENSRNOT00000058423 1 1 1 80 13 89610274 89610490 TGAACTATGGATTCAGTGGAG 57 89610214 89610233 AAACATCATATGGCTGGGTC 58 NA Rattus norvegicus 81 Olr1666 ENSRNOG00000017868 ENSRNOT00000024040 3 1 1 60 19 27534919 27534938 GAACCCTTTCATCTACAGCC 58 27534878 27534899 TAGTAGTGTATTCAGGGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhx6 ENSRNOG00000005996 ENSRNOT00000008817 2 1 1 80 3 15419087 15419106 ACGACATCCACTATTCTCCG 59 15415347 15419046 GTACCTGACTCTCGATGTAGC 60 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000048561 ENSRNOT00000065935 3 1 1 80 X 158216382 158216405 GCGCTGAATAGAAATAGTGATAGG 60 158210289 158216345 TGACTGGTCATTACAGTAGCT 59 NA Rattus norvegicus 81 Sdcbp2 ENSRNOG00000009528 ENSRNOT00000012690 3 1 1 80 3 147092430 147092450 AGTTATATGGGACTGTCCCTC 59 147092488 147097761 GATCACCATATTGTCACCATCTG 59 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 1 2 2 80 7 136611968 136658189 CTCGTGTACGGAACATGAC 58 136611906 136611924 CCTCCAACGGTGTTAAAGC 59 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 80 10 109899136 109899158 CTTGGATATGGAGAAGAGGAGAG 60 109899198 109899534 GTCATGTGATCCACCTCCT 59 NA Rattus norvegicus 81 B3galt5 ENSRNOG00000030983 ENSRNOT00000050178 3 1 1 86 11 36677879 36679001 CTCTTACCTGGCAAAGATGG 58 36679050 36679068 CTGAAGTACAAGCAGAGCG 59 NA InUTR Rattus norvegicus 81 LOC100363068 ENSRNOG00000049446 ENSRNOT00000075091 2 1 1 80 14 6140808 6140828 GATCCTTCCCAGAAGAGTCTC 59 6140423 6140768 TTCCCAGTAATAGCCTACAGC 59 NA Rattus norvegicus 81 Adcy7 ENSRNOG00000014776 ENSRNOT00000020700 1 1 1 80 19 19710820 19710838 AGCCTGGAGACAATGAGAC 59 19710140 19710776 AGGTGTAGTACGGGAGGAG 60 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 3 2 2 95 7 2850708 2851376 ATCCTTGAGTGGGTGAACTC 60 2851434 2851452 CTTGATTACAGCCTGCAGC 59 NA Rattus norvegicus 81 Coq5 ENSRNOG00000001171 ENSRNOT00000001546 2 1 1 80 12 47079605 47080435 ATCTCCAGGCTTTATGATCTG 57 47079545 47079564 ATAGGACTTCCAGTCTCCTG 58 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000085275,ENSRNOT00000042200 1 2 2 80 14 77143877 77151829 TGGACTCAATGCGATCTGG 60 77151870 77151891 GTGATGTATGGGATCTTGTCCT 60 NA Rattus norvegicus 81 Zfp451 ENSRNOG00000012718 ENSRNOT00000017022 2 1 1 81 9 38437285 38439490 CTTTCAAGGAGGAAACACCA 58 38439534 38439552 AAAGAAGCATCCGATCCTG 58 NA Rattus norvegicus 81 Olr214 ENSRNOG00000048643 ENSRNOT00000067201 3 1 1 60 2 4859123 4859144 CTCACTTCAGTTATCACTCCCA 60 4859162 4859183 ATATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1262 ENSRNOG00000045981 ENSRNOT00000072858 2 1 1 60 2 46140901 46140922 GTGTTCTTATCTCATGCTTGCT 59 46140942 46140961 AGTGTGGATCATAGCATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbbp9 ENSRNOG00000007972 ENSRNOT00000010678 1 1 1 80 3 138705855 138705873 GAGACAGAACTGCACTGTG 59 138703576 138705811 CTCTGCATACCTCATGGCT 59 NA Rattus norvegicus 81 Aldh1a2 ENSRNOG00000055049 ENSRNOT00000079115 1 1 1 80 8 77685434 77687415 ATTATCCCGTGGAATTTCCC 58 77687457 77687476 GATGACCACAGTGTTACCAC 59 NA Rattus norvegicus 81 Dram2 ENSRNOG00000017744 ENSRNOT00000023903 3 1 1 80 2 209185519 209185539 TCACAGCAAACAAGTCTTCTG 59 209185578 209186360 GAGCAAGTCATCATGCTAAGTG 60 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 3 2 2 80 7 91833301 91833322 AGTTTCTTGAGAGGACTTACCT 59 91833363 91844394 TCTGTCCACGTTCTCTGTC 59 NA Rattus norvegicus 81 Cartpt ENSRNOG00000017712 ENSRNOT00000023869 2 1 1 85 2 30127092 30127110 GTCCCATGAGAAGGAGCTG 60 30126636 30126654 TCTTCAGGACTTCCTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910928 ENSRNOG00000008499 ENSRNOT00000011225 3 1 1 60 7 9280243 9280263 ACTGGTGTTAGTGAACCTCTC 60 9280284 9280303 AGATGGGATTCTCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikzf4 ENSRNOG00000005535 ENSRNOT00000019738 1 1 1 81 7 3072539 3074286 AAGGGAAGGATAATCTGGAGAG 59 3072479 3072497 AAATGGTTGGAGTCCTGGG 60 NA Rattus norvegicus 81 LOC100360726 ENSRNOG00000045728 ENSRNOT00000074653 1 1 1 61 11 42936444 42936462 GGAAACCACTGATACGCTG 59 42940620 42940638 ATGTCACTGAGGGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ola1 ENSRNOG00000019047 ENSRNOT00000026040 2 1 1 80 3 59862206 59862229 GGGCCCATTATAGATAAACTAGAG 58 59848068 59862169 GCACATTATGTCATATTCGGG 57 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 3 2 2 89 10 63476653 63490910 TCCATCATGTCTCGAAGTAGTG 60 63476585 63476603 GAAGGTGATGCTAAGCAGC 59 NA Rattus norvegicus 81 Cd3g ENSRNOG00000015945 ENSRNOT00000021390 2 1 1 80 8 49279405 49280803 CTTCTTCAAGGCACCATGG 59 49278338 49278356 TACAGAGCCATCTCCTTGG 59 NA Rattus norvegicus 81 Acat1 ENSRNOG00000007862 ENSRNOT00000010573 1 1 1 80 8 58178833 58178851 GAAGTAAAGAGGCGTGGGA 59 58176087 58178791 CGTCTGGTTTACCTTTCACTG 59 NA Rattus norvegicus 81 AABR07002093.1 ENSRNOG00000048663 ENSRNOT00000074234 2 1 1 80 1 66310541 66313169 TTGAAGGAGGATATCCAAGTACC 60 66310483 66310502 TCCTAGTTGGAGTACTTGGC 59 NA Rattus norvegicus 81 Lrrc52 ENSRNOG00000004356 ENSRNOT00000005768 2 1 1 96 13 85672464 85694469 ATATGGACCACCCAGATGC 59 85672386 85672405 ATGTACTGGAGTGGATTCCC 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 2 3 3 80 7 61183065 61184368 TCTCCAGAGAAGAAGGCAG 58 61184409 61184430 CTTCTTTATAGGCTGGTCTGAG 58 NA Rattus norvegicus 81 LOC100361411 ENSRNOG00000030234 ENSRNOT00000042460 2 1 1 80 7 23012791 23012811 AAATCTTCACGGTTTCACCAG 59 23012851 23017392 GGAGGGAAGATTTCTTGATCC 58 NA Rattus norvegicus 81 Srsf4 ENSRNOG00000010007 ENSRNOT00000013301 1 1 1 80 5 150050598 150050617 GTGAACGAGTCATTGTTGAG 57 150050659 150051438 GATAACCATATCCACTGCGT 58 NA Rattus norvegicus 81 AABR07002241.1 ENSRNOG00000015707 ENSRNOT00000021046 3 1 1 81 1 69514821 69521267 CTTCTGCTACTGATATGGATCAG 58 69521307 69521326 TTCTGAATGCATTTGTCCCG 59 NA Rattus norvegicus 81 RGD1565616 ENSRNOG00000021237 ENSRNOT00000028842 3 1 1 80 3 123276936 123278853 TTTACTCAGAGGTCTTCTCCC 59 123276876 123276897 ATAATCCATCCTCCTGGATCAC 59 NA Rattus norvegicus 81 Olr1767 ENSRNOG00000029322 ENSRNOT00000040369 1 1 1 60 X 137014457 137014477 GGATCTCAAGCAGGAAATCAG 59 137014417 137014437 TTAGCATAGGGATCACCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem29 ENSRNOG00000049908 ENSRNOT00000073957 3 1 1 87 X 20821686 20833308 CTATAGAGTCGACAAGCAGTG 58 20821619 20821638 TTTAAGCTGTTCTCTGGCAC 59 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 3 1 1 91 7 144648435 144648929 AAATTCACGTTAGCACGGTG 60 144648983 144649001 TAATTCCAGGACCTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Atp6v1c1 ENSRNOG00000004846 ENSRNOT00000006917 2 1 1 80 7 77697546 77697564 GTACATGGCTGATGTGCTG 59 77697606 77698818 TAAGTGACCAAGTCAACTCCA 59 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043,ENSRNOT00000032299 1 2 2 80 5 73944327 73949551 TGGATAACTCACAAGCTTCAC 58 73944267 73944287 CAGCTCTAGAACTTGCTTCTC 59 NA Rattus norvegicus 81 Wfdc8 ENSRNOG00000014771 ENSRNOT00000055160 3 1 1 85 3 161064489 161064508 AACAGACTTCAACTGTGAGG 58 161062136 161064441 GGCAGGGTTCTTCATAAGG 58 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 2 2 2 80 1 100832592 100832610 AAGGTGGTAGTGGTTGGTG 60 100832654 100833315 GATGGTGACCTTGTGTCCT 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 2 2 4 80 13 91222605 91227128 TCTGGAAGTGATTTCTGACTG 58 91222545 91222565 CACCTTAATGTGATGGTTTCC 57 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208,ENSRNOT00000035915 1 2 2 81 16 9607725 9607743 ACTTGGCAACTGTCTTTGG 59 9607788 9609870 ACCAAAGATGTGCCTTCCA 60 NA Rattus norvegicus 81 RGD1561875 ENSRNOG00000047992 ENSRNOT00000050291 3 1 1 60 2 235950836 235950857 TTGTGAGGACTAATGGAAAGGA 59 235950797 235950817 GCCATGAATTCGTATGGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 2 1 2 81 19 19777431 19779368 CAACAAGTCACAGCATGGA 58 19771877 19771896 GTTGCTTAACACTGAAGGCA 59 NA Rattus norvegicus 81 LOC100910872 ENSRNOG00000054063 ENSRNOT00000090123 2 1 1 127 8 116336623 116338470 TTGAACATGAAGTGACACAGC 60 116338559 116338577 GGTACTCAGGATCAGCTCC 59 NA InUTR Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000008944,ENSRNOT00000082469 1 2 2 80 13 90572707 90576199 GGAGGTGTGGTAAACTGTC 58 90576240 90576261 GATCTTCACATCATGGTCTAGG 58 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940,ENSRNOT00000091355,ENSRNOT00000078354,ENSRNOT00000079962 3 5 5 80 7 80780605 80780626 CCGTTTAAAGTAAGTGATGGCT 59 80780663 80782242 CTTGAAGACCTCAAATTCTGGAC 60 NA Rattus norvegicus 81 Prkcsh ENSRNOG00000013360 ENSRNOT00000018009 3 1 1 80 8 23024473 23024492 CTTTGATTTCGGTCCCTCTG 59 23024533 23024905 CGGTAGACATACTCATTGGTG 58 NA Rattus norvegicus 81 Gstm5 ENSRNOG00000049743 ENSRNOT00000072342 3 1 1 80 2 210685692 210685710 CATCCGTATGCTCCTGGAG 60 210685751 210686055 CTATCATAGTCAGGAGCTTCCC 60 NA Rattus norvegicus 81 Htr1a ENSRNOG00000010254 ENSRNOT00000013618 1 1 1 60 2 36247207 36247225 GGCTACACCATCTACTCCA 58 36247249 36247267 GAACCAGCATGAGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef26 ENSRNOG00000014549 ENSRNOT00000019553 3 1 1 80 2 27181855 27181874 CCACGTTTGATCCCTATGTG 59 27181914 27184130 GGTTGGTTGTTAACAACTTCTG 58 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000067975,ENSRNOT00000080557,ENSRNOT00000000821 1 4 4 80 12 48164253 48164271 CATATTCGATGTCCTGCCC 58 48162028 48164210 CTCCTCACATAAACCTCCAG 57 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000078868,ENSRNOT00000067975,ENSRNOT00000080557,ENSRNOT00000000821 3 4 4 80 12 48164252 48164270 ATATTCGATGTCCTGCCCA 59 48162027 48164210 TCTCCTCACATAAACCTCCAG 59 NA Rattus norvegicus 81 Ccdc18 ENSRNOG00000024545 ENSRNOT00000036442 1 1 1 80 14 2582857 2582878 TTATGACAGTCGAGAATGTAGC 58 2578692 2582819 CCTTGATCCTTTATGCTTTCAG 58 NA Rattus norvegicus 81 Hykk ENSRNOG00000013419 ENSRNOT00000018003 3 1 1 81 8 59511204 59511740 TCATGTCCATTGACAGTGGA 59 59511784 59511802 TCAGCGATTGGTCTTCCTG 60 NA Rattus norvegicus 81 Zdhhc5 ENSRNOG00000006832 ENSRNOT00000009708 2 1 1 80 3 72096797 72096964 CGAACTGCTGTCACAATGG 60 72096735 72096754 CACATGAAATCCTGTGAGGC 59 NA Rattus norvegicus 81 Ppy ENSRNOG00000020874 ENSRNOT00000028318 3 1 1 84 10 90042152 90042170 ATGCTACGCATGAACAGAG 58 90041902 90042104 CTCTTCCCATACCTAGGCC 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000002379 ENSRNOT00000003235 1 1 1 93 X 158094074 158132625 AGAAGGAGAATCCCTTCCTG 59 158132679 158132699 ACCTCCTAGGAACTTGATGAG 59 NA InUTR Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000086090,ENSRNOT00000089198 2 2 3 82 14 83343375 83343393 CTCTACTACCTCCTGCCCT 60 83343439 83344712 TTATACAGGGACACCCTGC 59 NA Rattus norvegicus 81 LOC100361645 ENSRNOG00000031951 ENSRNOT00000051344 2 1 1 80 3 46198184 46208146 AAAGAAAGAACTGTGGGAAGG 59 46208188 46208206 TCCTCCTCACTGATTGCAC 59 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076211 3 1 3 60 20 47159157 47159176 GGATACACCGCCTTAAACAG 59 47159116 47159135 TACGACTTAGCCATGAATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805,ENSRNOT00000078514 2 3 3 80 1 217625141 217629046 GCAAGATAGGATGGACAAATCAG 60 217625083 217625101 ACTGAGTCCACTTGTGAGC 60 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 2 2 2 80 8 50073571 50074248 TGGAAGAGGTCTCTGACGA 60 50073509 50073527 AGTCATCCATGTCGCTGAG 60 NA Rattus norvegicus 81 Il36a ENSRNOG00000005722 ENSRNOT00000007540 1 1 1 80 3 1332420 1332441 GTGAAGAAACCTCAAAGTTGTC 58 1332482 1334544 CAGTATGTTCCCTTCCCGA 59 NA Rattus norvegicus 81 RGD1560672 ENSRNOG00000025005 ENSRNOT00000031190 2 1 1 80 13 88266672 88266690 CTATCACGTGAAGTCGCTC 58 88266732 88271529 TTCTTGACGATATCTTGCTGC 59 NA Rattus norvegicus 81 RGD1560672 ENSRNOG00000025005 ENSRNOT00000031190 3 1 1 80 13 88266670 88266688 CTCTATCACGTGAAGTCGC 58 88266731 88271527 CTTGACGATATCTTGCTGCA 59 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 3 2 2 80 20 4540678 4540788 ATGATGGAGCGGGATACTG 59 4540616 4540635 TGTCTTCAAGACGGTACTGG 60 NA Rattus norvegicus 81 Cops4 ENSRNOG00000023650 ENSRNOT00000003046 3 1 1 83 14 10732679 10732697 AGGCTTACATAAACCGAGC 58 10732479 10732635 GTGCATAGCAAACCTTATAGTG 58 NA Rattus norvegicus 81 Klk5l ENSRNOG00000046267 ENSRNOT00000073513 2 1 1 105 1 99363026 99363044 AGAGACATTCCCAACCCTG 59 99363113 99371058 TTATGCGAGGGAGAAGTGC 60 NA Rattus norvegicus 81 R3hdml ENSRNOG00000027432 ENSRNOT00000031868 1 1 1 80 3 159887397 159887415 CGCCTTGCTGGATTATCAC 59 159887456 159890797 TCATCCCAAACCATATACTCCA 59 NA Rattus norvegicus 81 Psrc1 ENSRNOG00000020013 ENSRNOT00000055880 3 1 1 81 2 211178197 211179163 CCAGTATAAAGAAGGAATCACCC 59 211179204 211179222 GTTGGTTGTGCAAGAGGAG 59 NA Rattus norvegicus 81 Olr77 ENSRNOG00000045576 ENSRNOT00000049645 2 1 1 60 1 168224396 168224415 GTTGTCTTTATGCCACTGCC 60 168224435 168224456 TGGGTCACAATGATAAAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx5 ENSRNOG00000030680 ENSRNOT00000048490 3 1 1 80 10 94985245 94985481 GATGGGCCTATTTGCTTGG 59 94985183 94985203 TCTACAATATTCAGCAGCGAC 58 NA Rattus norvegicus 81 Slc39a5 ENSRNOG00000033361 ENSRNOT00000045547 1 1 1 80 7 2817184 2817204 TTTATCAGATTGACAGCCGTG 59 2816968 2817142 TATGAAGCAGGGCAGACAG 60 NA Rattus norvegicus 81 Lrrc1 ENSRNOG00000005970 ENSRNOT00000007867 1 1 1 80 8 84732764 84732782 CAGACTGACCCGAATACCT 59 84725021 84732720 TGGTGTAACCTGTTCCCTG 59 NA Rattus norvegicus 81 Tceal3 ENSRNOG00000049020 ENSRNOT00000071874 3 1 1 60 X 107323593 107323612 TTACAGGACAGGCATGTGAG 60 107323634 107323653 CCCTTGTCATATCTGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edem2 ENSRNOG00000019299 ENSRNOT00000026120 2 1 1 80 3 151239094 151241003 GGTCTTCAGAGCCTTATTGG 58 151239033 151239052 CCCAAACTGCTTCCATACAG 59 NA Rattus norvegicus 81 Krt35 ENSRNOG00000013754 ENSRNOT00000018566 3 1 1 80 10 88007658 88007676 GAGGTGCCAGTATGAGACC 60 88007428 88007614 TTCAGTTCCTCAGTCTGGG 59 NA Rattus norvegicus 81 Or51t1 ENSRNOG00000048436 ENSRNOT00000072815 1 1 1 60 1 168092733 168092754 TCAAATTCTCATACACCAACCC 59 168092773 168092793 TAGAGCTGAAGAAACATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287,ENSRNOT00000050330 3 2 2 80 2 247325986 247326005 CGAATTATACCTGTGTTGCC 57 247326045 247330410 CACCATTAACATACACGATGAC 58 NA Rattus norvegicus 81 Coa3 ENSRNOG00000020487 ENSRNOT00000027782 1 1 1 80 10 89199222 89199511 GGTGTTAGCTATTTATGGTTACACC 60 89199166 89199185 GCTTTGGCTTCATCTTCCAG 60 NA Rattus norvegicus 81 LOC257642 ENSRNOG00000048268 ENSRNOT00000071572 1 1 1 90 14 46593807 46593825 GATCCCTACAACTCGGTGG 60 46588773 46588791 AGGTCTCCAAGGTGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Osm ENSRNOG00000024390 ENSRNOT00000035591 3 1 1 101 14 84465658 84467211 AACACTGCTTAGTTTGGCC 59 84467276 84467294 CTCTTCAACTGGCTGAGGA 59 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223,ENSRNOT00000083659 3 2 2 80 8 32551934 32552034 CTAGTTCAGGTGTTCTTCTGGT 60 32552075 32552093 GAGTCTGGATGGAAGCAGG 60 NA Rattus norvegicus 81 Gpsm2 ENSRNOG00000012149 ENSRNOT00000066178 3 1 1 80 2 211504570 211506228 GCTCAAGGATCGAATTGGTG 59 211504509 211504530 GCTTGGTCATGATTTCCTAGAG 59 NA Rattus norvegicus 81 AABR07041141.1 ENSRNOG00000061620 ENSRNOT00000080863 2 1 1 60 X 120521848 120521866 TCAGGTAACGCAGTTTGTC 58 120521806 120521825 AACCAGCTGAATTGAGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppwd1 ENSRNOG00000012505 ENSRNOT00000016863 2 1 1 81 2 34295009 34295027 AAACGAGTTTCCGACAGTG 58 34293099 34294964 TCTTGGGACACTCAACAGG 59 NA Rattus norvegicus 81 Rnft2 ENSRNOG00000001124 ENSRNOT00000001486 3 1 1 80 12 43943874 43949230 CATTCCACCTGAAAGAAGTCG 59 43949270 43949290 TTCAGGCTCTCAAATACACCA 60 NA Rattus norvegicus 81 LOC100910697 ENSRNOG00000050594 ENSRNOT00000050480 2 1 1 60 X 95352599 95352617 TGCTGGACATATTCTGCCC 60 95352640 95352659 TCAGCCAACAGATTCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000065115,ENSRNOT00000084198 1 2 2 92 2 178117637 178169840 GGTCATCACAGGTCCAGAC 60 178169896 178169914 TTCTCTAATGCTGGACGCT 59 NA Rattus norvegicus 81 Nck2 ENSRNOG00000017155 ENSRNOT00000023029 1 1 1 99 9 50313762 50313781 TTCAAGGTGTCCTCAGACAG 59 50313843 50335809 TCATGGAGCCCTTCTTTGG 60 NA InUTR Rattus norvegicus 81 LOC100912928 ENSRNOG00000048573 ENSRNOT00000045710 3 1 1 60 X 17540825 17540843 AAGATGCCATCAAGGTCCT 59 17540867 17540885 AGTTTCTCCAGGTACTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acads ENSRNOG00000001177 ENSRNOT00000001556 3 1 1 83 12 47256230 47256248 ACTTTGCTGAGAAGGAGCT 59 47256295 47260964 CCATCTTCTTCACCTGCGA 60 NA Rattus norvegicus 81 Rdh8 ENSRNOG00000025767 ENSRNOT00000032076 1 1 1 80 8 21840294 21840312 TTCCAGGCATGAAGAGGAG 59 21840356 21841168 CATTGAACATGACGCCCTG 60 NA Rattus norvegicus 81 LOC100363125 ENSRNOG00000021470 ENSRNOT00000036543 1 1 1 60 X 13992122 13992142 CAGTTAACAAAGTAGAACGCC 58 13992164 13992182 GAGGAGTTAGGGCATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angpt4 ENSRNOG00000005008 ENSRNOT00000006786 3 1 1 81 3 147445633 147447143 CCTCTCAAGGTGTTCTGTG 58 147447187 147447206 AATTCAAGCTTCCATCCTCC 58 NA Rattus norvegicus 81 Tiparp ENSRNOG00000011238 ENSRNOT00000015387 2 1 1 82 2 157320151 157334141 ATGAAGTATGGAGGTCAAGAC 57 157334182 157334203 CTTCGTAGTTGGTCAAATTCAG 58 NA Rattus norvegicus 81 Limd2 ENSRNOG00000025448 ENSRNOT00000035973 3 1 1 81 10 94351821 94351924 AGCGGTCTAAGTCCTTTAGC 60 94351759 94351777 CGCTCCATAGGGTACACAG 60 NA Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 3 2 2 80 1 126980281 126980299 CATCCAGAAGCTCTCCCTG 60 126980343 126983024 ACATCAGGCTCCAGAACAG 59 NA Rattus norvegicus 81 Nkd1 ENSRNOG00000014293 ENSRNOT00000019301 3 1 1 80 19 19443848 19445635 TCAAGTTTGAAGAACTGCAGTG 60 19443789 19443811 CGAAGTCATACAGAGTGAAAGTC 59 NA Rattus norvegicus 81 Sppl3 ENSRNOG00000001178 ENSRNOT00000001562 1 1 1 80 12 47299691 47299714 GAACCAAGATAAGGAGAAAGACAG 59 47292037 47299655 ATGGTCTGAATGCTGTTATTGG 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 2 2 2 80 8 118871496 118873074 GTAATCACGAGACAGACTCAG 58 118873116 118873134 CTCAGCTTCATGCTCAAGG 59 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 1 2 2 80 1 71687041 71687059 TGGACAAAGGGATCTCCTC 58 71680854 71686997 AACAGTTGGCTAACACCAG 58 NA Rattus norvegicus 81 Ube2q2 ENSRNOG00000014529 ENSRNOT00000019539 3 1 1 80 8 59740753 59743232 AGACCATTTAAATGGTGCGG 59 59743274 59743293 GATCTGTAGACGTCCCTGAG 59 NA Rattus norvegicus 81 Dido1 ENSRNOG00000009936 ENSRNOT00000013189 1 1 1 80 3 176175358 176175906 TATCTCAGTGAGGATTTGCCA 59 176175298 176175316 TTTGCCAACGTAATCCCAC 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000087190,ENSRNOT00000089624 1 2 5 98 8 99717198 99717219 TTCAGAATGACAAGAAGGAGGA 59 99717272 99723368 CATCAAGAGACTTGATCTCAAAGTC 60 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000049355 ENSRNOT00000070802 1 1 1 60 X 106523749 106523767 CCTCTTGTGACTGGATCTG 57 106523788 106523809 TGGCTATTTCATAGGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Doc2g ENSRNOG00000018029 ENSRNOT00000024353 1 1 1 127 1 219251433 219251525 AAGACCCTGAGGCTATGTG 59 219251616 219251634 CAGATGTCAAAGCTCCTGG 58 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767,ENSRNOT00000083702,ENSRNOT00000026482 1 3 3 80 1 40903940 40905587 CAGAATCCTAAGATGTTAGTTGCTC 60 40905624 40905643 CAGCAGCATCTTGTTCTGTG 60 NA InUTR Rattus norvegicus 81 Anxa5 ENSRNOG00000014453 ENSRNOT00000019554 1 1 1 80 2 123165474 123165495 TCAGATTGAGGAAACCATTGAC 59 123163782 123165434 CTCCGAATAGACTTCACGAC 58 NA Rattus norvegicus 81 LOC685789 ENSRNOG00000003531 ENSRNOT00000004683 3 1 1 85 X 22734739 22736745 TACACAAAGATTTGACAGTGGG 59 22736789 22736809 GTATTTCCAACACGAAAGCTG 58 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 2 2 3 82 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294627 89294647 TGATGAGACAGTACCTCTGGA 60 NA Rattus norvegicus 81 Olr113 ENSRNOG00000015940 ENSRNOT00000021334 1 1 1 60 1 168702727 168702745 CTTTGACCGCTACATTGCT 59 168702685 168702705 GTCATTGGTTAGGATGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 1 2 2 137 1 80606778 80609216 GATCAAGACTCGGAACTGGT 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Aoc3 ENSRNOG00000051307 ENSRNOT00000076820 3 1 1 85 10 89256078 89256097 GATACTCAGCTTTGCTGGGA 60 89256144 89256483 TCACAGCCAAGTGATACCTG 60 NA Rattus norvegicus 81 LOC683684 ENSRNOG00000048516 ENSRNOT00000075757 3 1 1 60 X 20807179 20807198 TGGGATCCAATGTCAATTGC 59 20807138 20807158 CATCTTGTGAGCTCTTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 2 3 3 80 8 26434143 26447683 CTCTTATGGTAGTAGGTGAATCTG 58 26447718 26447740 CTGGAGAATACAAATCTGTGAGG 59 NA Rattus norvegicus 81 Cep112 ENSRNOG00000024557 ENSRNOT00000037067 3 1 1 80 10 96943301 96943320 TGAGACTGAGATGACTCTGG 58 97046944 97046963 TGTTTGGCAAGCTTCTGAG 59 NA Rattus norvegicus 81 Mir6330 ENSRNOG00000050956 ENSRNOT00000072980 2 1 1 60 8 113718182 113718203 GGTCATTTCAGTACATGTACAC 57 113718143 113718162 GTTACACATGTGTTGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685762 ENSRNOG00000031555 ENSRNOT00000049256 3 1 1 60 X 24059559 24061083 GATTTGCAGGAGTGAAGGA 58 24061104 24061125 GATAATAGACTGCAAAGGAAGC 57 NA DesignNoJunction Rattus norvegicus 81 Nelfb ENSRNOG00000009377 ENSRNOT00000012978 3 1 1 80 3 2430484 2430502 GTTTGATGAGCTACGCGAC 59 2430263 2430441 TTCTTGTACCTCTCCTCTGC 59 NA Rattus norvegicus 81 Ptpn11 ENSRNOG00000030124 ENSRNOT00000046323 2 1 1 80 12 40923496 40923514 GGAGTTAAGCAAGCTAGCC 58 40923557 40930394 TCCTGTTGCTGTAGAGTCTC 59 NA Rattus norvegicus 81 Lipt1 ENSRNOG00000018464 ENSRNOT00000024896 3 1 1 93 9 44466669 44466687 CAAGTGCTCTAGGTCCCAC 60 44466743 44469371 AATGGAATTAGCATGCTGCC 59 NA InUTR Rattus norvegicus 81 Pfdn5 ENSRNOG00000012985 ENSRNOT00000017794 2 1 1 80 7 143925360 143926966 CTGACGAGTTCTATGTATGTCC 58 143927007 143927025 CACGTAGTAACCAGTTCCC 58 NA Rattus norvegicus 81 Enoph1 ENSRNOG00000002262 ENSRNOT00000003083 3 1 1 80 14 11176770 11176789 GTTACCGGAAGATTGCAGAC 59 11173308 11176727 CACTGGCCTCTACAGTGAC 60 NA Rattus norvegicus 81 AABR07006688.1 ENSRNOG00000030934 ENSRNOT00000048735 3 1 1 60 1 248213692 248213710 ATGTCTGTCTCATCGTCCC 59 248213650 248213669 CAGTTGTTGCGAAGTCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paox ENSRNOG00000018838 ENSRNOT00000064501 1 1 1 81 1 212601204 212601225 GAGTTTATGGAGACTCTGTCAG 58 212601267 212602079 ATTGTGGGTTTCCTGTCAC 58 NA Rattus norvegicus 81 Zmat5 ENSRNOG00000007849 ENSRNOT00000010332 1 1 1 98 14 84953926 84959955 GACATGTTCCGAGATGCAG 59 84961758 84961776 GTTGGAGCCAAAGTCACAC 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 1 3 3 80 5 61604367 61604387 TAATTCCTACCGAGGCTTCAC 60 61604426 61606802 TGCCTACATACCTGATAACCAC 60 NA Rattus norvegicus 81 LOC100910559 ENSRNOG00000047090 ENSRNOT00000048564 2 1 1 60 7 13674656 13674675 ATGTGCCTCTCATCTTTCCA 59 13674697 13674716 GATGTATACTCCGATGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1087 ENSRNOG00000007348 ENSRNOT00000009615 1 1 1 60 7 13997097 13997119 CATCATCCTAGCCATCATATCAG 59 13997138 13997157 GCAGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1065 ENSRNOG00000049157 ENSRNOT00000048396 3 1 1 60 7 9294828 9294848 CTCAGCCATCATTCTGTTGAC 59 9294864 9294888 GAAGAAATACATAGGTGTTTGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1572 ENSRNOG00000024527 ENSRNOT00000037311 1 1 1 60 12 13478452 13478470 CTAGCTTGCTGTTGTTTGG 57 13478493 13478512 GGAATATAGCGGTGGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag7 ENSRNOG00000004246 ENSRNOT00000005653 3 1 1 80 10 57285910 57285929 GAAGAGCTAGATTCCTACCG 57 57285747 57285868 AGCTAGCTCCTTTAGTTTCC 57 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000047779 3 1 3 90 20 4772559 4772671 CAGAGATGGGAGCCTTCTC 59 4772487 4772507 AAACTACAAAGACAGCCACAG 59 NA Rattus norvegicus 81 Itgax ENSRNOG00000036703 ENSRNOT00000054983 2 1 1 80 1 199561963 199561984 GAAGGTTGTCATCTTTACCCAG 59 199562025 199562203 AAGTAGGAGCCGATCTGTG 59 NA Rattus norvegicus 81 Rad21 ENSRNOG00000004420 ENSRNOT00000006209 1 1 1 80 7 91522319 91522342 CAGAGTAGAAGAGATAACCATGAG 58 91521684 91522281 ATTCCAAAGTCACCGAAGTC 58 NA Rattus norvegicus 81 Ccr10 ENSRNOG00000020275 ENSRNOT00000027458 3 1 1 173 10 89088242 89088956 CACAGAACAGGTCTCCTGG 60 89088087 89088105 AAGACTAAGCCATTGCCCA 59 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551,ENSRNOT00000001552,ENSRNOT00000039281 1 3 3 80 12 47206530 47206548 CTAAACTCCTGGCGGAGAC 60 47206592 47206816 CACCGTTGGTGTCAAACTC 59 NA Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 2 2 2 81 8 32211454 32213615 GCTTATCCACTCAGGAATTAAACC 60 32213653 32213673 ATGCATCTTTAGCGAGTAAGC 59 NA Rattus norvegicus 81 Fbxo17 ENSRNOG00000019942 ENSRNOT00000027006 3 1 1 81 1 86916683 86917426 TCTACATAGCTGACTGGTGG 59 86917470 86917488 TCATGTTCGTCCAGTAGGC 60 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 1 2 2 72 12 52641971 52641989 GATGTGCTGTTGCAGTTCC 60 52641434 52641452 TGATGCCAGCAACAAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Axin2 ENSRNOG00000055010 ENSRNOT00000088599 3 1 1 81 10 97220684 97220702 CAACGACAGCGAGTTATCC 59 97220747 97228748 AGGAGGGATTCCATCTACG 58 NA Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000084971 2 1 2 137 20 4698680 4698698 ACCTCACACTCTGCTTCTG 59 4698358 4698376 TAGCCGACAGAGATGAACC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000084971 3 1 2 165 20 4698708 4698726 GTCTGGGATCTCAGATGGG 59 4698358 4698376 TAGCCGACAGAGATGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Tnk1 ENSRNOG00000015578 ENSRNOT00000056860 2 1 1 80 10 56464807 56464945 TGGGTGTACAAGATACTTGGG 60 56464747 56464765 ATGGAGGTGTGGAAGACTG 59 NA Rattus norvegicus 81 Ppp2ca ENSRNOG00000005389 ENSRNOT00000007621 1 1 1 80 10 37542432 37542453 TTATGGGAGACTATGTGGACAG 59 37540275 37542393 CTCGGTAACGAACCTTAAGAG 58 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 2 2 2 80 8 59580255 59580275 ATATCTCAGTTAGTGGACGTG 57 59582917 59584585 CACATCTATCCATTCCTGCT 57 NA Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000084421 1 1 2 95 12 46869878 46870176 GGAGTGGACAGAATGAGGG 60 46870235 46870253 TAACCCTGTGGATCCATGG 59 NA InUTR Rattus norvegicus 81 Erlin2 ENSRNOG00000013763 ENSRNOT00000018973 3 1 1 80 16 69185471 69185490 CAGAAATCACCTATGGGCAG 59 69182600 69185428 CCAGAAATGCAGCATCCTC 59 NA Rattus norvegicus 81 Scn7a ENSRNOG00000029342 ENSRNOT00000041096 2 1 1 80 3 52844785 52844806 TAATTAGTGTTCTCACCGACAG 58 52843106 52844746 GCAAAGTATTCTCTACTGCCA 58 NA Rattus norvegicus 81 Trub1 ENSRNOG00000017321 ENSRNOT00000023309 1 1 1 80 1 278321837 278332196 GGGTCCAAGAGGTATATCGC 60 278332239 278332257 CTCCTCTGTTACCTTCCCG 59 NA Rattus norvegicus 81 Hgfac ENSRNOG00000009572 ENSRNOT00000013257 1 1 1 80 14 80972173 80972191 ACAACTACGACAGAGACCG 59 80971556 80972129 AAGGATCAAGGACAGCTGG 59 NA Rattus norvegicus 81 Tmem182 ENSRNOG00000028945 ENSRNOT00000049349 1 1 1 80 9 47538899 47572516 GACTCCGCAATTATTTACCGT 59 47572557 47572576 CAGAAAGCTTGCAGTCAAGG 60 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 3 1 1 85 8 36909476 36909928 TGTACAAGTCTCATACAATGGG 58 36909974 36909992 TCCCAAGTTTCTTCTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000071613 3 1 2 114 12 50397044 50397062 TTTGTCCTGGAGAAGGGTG 59 50393155 50396378 TATGCTCCTGGGAATCTGC 59 NA Rattus norvegicus 81 Trim28 ENSRNOG00000027487 ENSRNOT00000029996 2 1 1 80 1 65544943 65545041 TCTACATTCTCCATGGAGCAG 59 65544883 65544901 AGGTGACAGCTTCTCTTGG 59 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 3 2 2 80 14 86146442 86146639 ATTCAAGGAAGCCTTCAGCT 60 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 Olr729 ENSRNOG00000006771 ENSRNOT00000008864 3 1 1 60 3 78885808 78885826 TCTTATGAGGGTTGCATGG 57 78885766 78885784 TGATCTCAACACCTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 2 2 2 80 8 129206271 129206289 GCATCGTGGTACTTGTGAC 59 129206332 129218203 CGATTCCATACTTCAGCCCT 60 NA Rattus norvegicus 81 Ubxn8 ENSRNOG00000015109 ENSRNOT00000020347 2 1 1 80 16 62256633 62256651 TTACGATCGTCATTTCCGT 57 62256694 62259393 CTTCTTCTCCTTCTTTCGGA 57 NA Rattus norvegicus 81 Olr143 ENSRNOG00000016964 ENSRNOT00000022759 1 1 1 60 1 169240795 169240816 CTGTCTAGTCCAGATGTTTCTC 58 169240837 169240855 CAGCAGTATCCCTGACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a36l1 ENSRNOG00000013802 ENSRNOT00000037120 3 1 1 80 8 104966869 104966888 TGTGAGAATGATGCTAGCTG 58 104966302 104966829 CTTGTTCTTACAACTTCGTGTG 58 NA Rattus norvegicus 81 LOC100911874 ENSRNOG00000049995 ENSRNOT00000073557 2 1 1 80 9 52822785 52823724 CTCACCTAAAGATACTGAGCC 58 52822725 52822745 TCAAGTTCACGGATGTTAGAG 58 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000092165 3 1 2 173 9 8399672 8400358 ACAGTTCCTACCGCATCAG 60 8400495 8400513 CACAGATGTTCATTCCGGC 59 NA InUTR Rattus norvegicus 81 Rtp3 ENSRNOG00000037167 ENSRNOT00000056100 2 1 1 84 8 119264346 119264364 AGACAAGGAGCTTCTTCCC 59 119262334 119264298 GGAAGAACAGTGGAACCTG 58 NA Rattus norvegicus 81 Hirip3 ENSRNOG00000029061 ENSRNOT00000039964 2 1 1 80 1 198299040 198299060 AAAGTTAAGAGGTCTCCTGCT 59 198299101 198299376 AGAGCTGGATTCTGACTCTG 59 NA Rattus norvegicus 81 Mrps22 ENSRNOG00000047984 ENSRNOT00000070953 2 1 1 80 8 106609711 106610222 GAACCTTAAGACCATGTACAGC 59 106609652 106609671 GTGGAATCTGGCTCAAACTG 59 NA Rattus norvegicus 81 Hspa1b ENSRNOG00000050647 ENSRNOT00000081924 2 1 1 60 20 4879276 4879294 TGCAGGTGAACTACAAGGG 60 4879234 4879252 ACCATGGACGAGATCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr352 ENSRNOG00000054590 ENSRNOT00000087890 2 1 1 60 1 230011500 230011518 AAGCCTCTACGTTATGCCA 59 230011540 230011560 AGACAATAACTAGACCCACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756,ENSRNOT00000078085 3 2 2 80 16 72103339 72103357 TGCAAAGGTTTCTGCTGTG 59 72103396 72104471 GGTCCTTATACAGGAGTAAGTAGG 59 NA Rattus norvegicus 81 Olr88 ENSRNOG00000060826 ENSRNOT00000079028 2 1 1 60 1 168404256 168404276 TTATCCTCATATCGTATGCCC 57 168404298 168404316 GCCTCCTTCTGTTGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r46 ENSRNOG00000032817 ENSRNOT00000048152 3 1 1 60 1 67065123 67065144 TCTTTATAGGCACAGGAGTCAG 59 67065084 67065102 CATTCTCAGGGAATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr8 ENSRNOG00000030070 ENSRNOT00000050607 2 1 1 60 1 70496149 70496168 CAAGCCCATGTACTTCTTCC 59 70496108 70496128 GACTGACACATAGCACATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccno ENSRNOG00000010454 ENSRNOT00000013871 3 1 1 95 2 44858464 44859141 CTTGCAAGCAGGTAGAAGTG 59 44859199 44859217 ACTCGAGGTTACACAGCTG 60 NA Rattus norvegicus 81 Slc30a7 ENSRNOG00000013912 ENSRNOT00000019172 2 1 1 80 2 218937570 218937588 GCCATATTGGCTGGATTGG 59 218934773 218937529 CGCTCTAACATACCCATAAGAG 58 NA Rattus norvegicus 81 Spsb4 ENSRNOG00000012862 ENSRNOT00000017363 3 1 1 98 8 104891725 104891743 AACTATACCCGGTGGTGAG 59 104842285 104842303 ATAGGTCCATCAACGGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347,ENSRNOT00000088462 1 2 2 80 16 71669475 71670681 TGCCCAAATGATCGAAGAC 58 71670724 71670743 TGCTCCTTCTCCATAGTCAG 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980,ENSRNOT00000029284 3 2 2 80 16 71269257 71269277 CTGTCTTCCAAAGATCTGGTG 59 71267794 71269217 GTGTATACACTTCTTCGAGGC 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 3 2 2 81 8 130768294 130768313 TGTGGATCTCTTGCGTACTC 60 130768355 130792992 CCAGGCTCCATATGTCTACTG 60 NA Rattus norvegicus 81 Fst ENSRNOG00000011631 ENSRNOT00000015680 1 1 1 80 2 46538831 46539703 GATCTTGCAACTCCATCTCG 59 46538770 46538789 TGGAAGAGATAGGGAAGCTG 59 NA Rattus norvegicus 81 Klkb1 ENSRNOG00000014118 ENSRNOT00000019237 2 1 1 80 16 50168510 50168529 CTAGGATCACCTATGAGGCA 58 50168572 50169052 TCGTACAGTCAGAGCTCTC 58 NA Rattus norvegicus 81 RGD1306215 ENSRNOG00000015294 ENSRNOT00000020806 1 1 1 86 3 2679353 2679529 CTTACCAGAACTTGATCACCAG 59 2679288 2679306 AAACCAGGGTTGACGAGAG 60 NA Rattus norvegicus 81 Tmem56 ENSRNOG00000025160 ENSRNOT00000032324 3 1 1 80 2 224778021 224778039 GAGTGCTTGCATACATTGC 58 224773459 224777979 CTTCAAAGAACCATCTCTGGT 58 NA Rattus norvegicus 81 Ap3m2 ENSRNOG00000018650 ENSRNOT00000025675 2 1 1 80 16 74088053 74088071 CATCCTCTCCTTCATCCCT 58 74088114 74089444 GGAATGGCAACTAGGTTCTG 59 NA Rattus norvegicus 81 Frmpd1 ENSRNOG00000012546 ENSRNOT00000016839 1 1 1 80 5 60825636 60827484 GCTACTCTGATGCTACAGG 57 60827526 60827546 ATTGATGATCTGGCTAATCCC 58 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 1 2 2 80 2 225586276 225586616 TTACCTTTGGAAACATCCTCAC 59 225586656 225586675 CTCGAGAAATAGGCAGTCGT 60 NA Rattus norvegicus 81 Olr1328 ENSRNOG00000061713 ENSRNOT00000080504 3 1 1 60 8 43764059 43764077 CTTCATTGACCTCTGCCAC 59 43764100 43764119 TGACACAAAGTTTACCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg13 ENSRNOG00000016984 ENSRNOT00000022841 2 1 1 80 3 80584814 80584833 TGACGAGTTTGGACATACCC 60 80584378 80584773 GAGGGTTCACCATAGGATCAG 60 NA Rattus norvegicus 81 AABR07070046.1 ENSRNOG00000039200 ENSRNOT00000059997 3 1 1 91 8 45797688 45806548 CTCTACTTCAAATGGCTGGC 59 45806602 45806620 ATCAGTCTGCAGTCTCTGC 60 NA Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 2 2 2 81 2 34110114 34110132 AGACATGATGAAGTGCGGA 59 34100636 34110069 ATCGTGCAAAGTCAGTCTG 58 NA Rattus norvegicus 81 C4b ENSRNOG00000030729 ENSRNOT00000031704 1 1 1 80 20 4314876 4315005 GAAGTGAAGAAATATGTCCTTCCC 60 4314819 4314837 GTAGCTAGGCACTGTCAGG 60 NA Rattus norvegicus 81 Adam26a ENSRNOG00000038743 ENSRNOT00000059182 1 1 1 100 16 51749027 51750596 ACCTGATCTTATGCCAGCT 59 51750660 51750678 GTCATAAGAGCAGCAGGAC 58 NA InUTR Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 1 2 2 80 5 159521402 159521421 GTATGCTGTCTGCATCTTCC 59 159521464 159521567 AGAGTCATGCTTTGCTTCC 58 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 2 2 2 80 8 62407322 62407341 GGTGGACTATCTTCGATCAC 58 62407161 62407279 GCTTCACAGACGTCTAGTG 58 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000051720 2 1 2 107 16 60419348 60427279 TGTACCGGACTTCTAGCCT 60 60419259 60419277 GATCTTGAAGGTGAAGCGC 59 NA InUTR Rattus norvegicus 81 Akna ENSRNOG00000008005 ENSRNOT00000010516 1 1 1 80 5 79190765 79191032 GCTATGGCAGTAAATCCACAG 59 79190705 79190723 CTTGCCTTCTTCCCATTGG 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 2 3 3 80 20 48570166 48570189 CTGTGGACTTTAAGTACATAGCAG 59 48570226 48572173 CTAGCCATTTCCCATTTGGAG 59 NA Rattus norvegicus 81 Esm1 ENSRNOG00000010797 ENSRNOT00000014559 2 1 1 82 2 45104816 45108283 TGGTGTCTGTAAAGACTGTCC 60 45108327 45108345 TGTCACATATGCCCGACTG 60 NA Rattus norvegicus 81 Mpi ENSRNOG00000018898 ENSRNOT00000025783 1 1 1 80 8 62328201 62328222 CTGATGAAGAGTGAGAAGAAGG 58 62326123 62328162 TCCGTTAGATATTTGCTGGGA 59 NA Rattus norvegicus 81 LOC100910936 ENSRNOG00000049753 ENSRNOT00000075252 2 1 1 60 20 1134056 1134075 AGTGATGTCTTATGACCGCT 59 1134096 1134116 CATGATGACCTCATAGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dkk4 ENSRNOG00000019267 ENSRNOT00000026067 3 1 1 98 16 74262529 74262869 CGTGAATGATGTTTGCACTG 58 74262450 74262468 CATTTGGTGGTTCCCTCTG 59 NA Rattus norvegicus 81 LOC690478 ENSRNOG00000043302 ENSRNOT00000064565 1 1 1 60 20 11655997 11656016 AGTGACCTGAGCTACAACAG 60 11656037 11656057 AGTCAGTACAAGAGTCACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 3 2 2 80 8 132495520 132495538 CATGGGCTTCTACATGGCT 60 132495582 132504653 TGGTGTGAGGCAATCTCTG 60 NA Rattus norvegicus 81 Cd99 ENSRNOG00000050735 ENSRNOT00000073028 2 1 1 89 20 56196903 56196921 GATAACCTTGGCGCTACTC 58 56195758 56196140 TTCTTGTCAGTGTCCTCCA 58 NA Rattus norvegicus 81 Rcc2 ENSRNOG00000006327 ENSRNOT00000008940 2 1 1 80 5 159225947 159226751 CTGCCCAGATTATGTACAATGG 59 159226790 159226810 CTTTACAGTCCATCAGCATGC 60 NA Rattus norvegicus 81 Lrrc3 ENSRNOG00000001217 ENSRNOT00000001632 3 1 1 60 20 11490250 11490269 TGTAGTGTACTACGTACGCC 59 11490291 11490310 CTTGAGGTACTCCAGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500567 ENSRNOG00000026676 ENSRNOT00000030881 2 1 1 82 5 153976731 153976751 CATCAGAGGAATGTCAAGGTC 59 153976795 153977552 CTTGCTCCAGAGATCCCTC 59 NA Rattus norvegicus 81 Fut10 ENSRNOG00000050857 ENSRNOT00000071166 1 1 1 80 16 64698048 64703840 GGTGACAGTCCAGGTAGTG 59 64697986 64698006 TTCTGTCCATCTTGCAAATCG 59 NA Rattus norvegicus 81 Gm10100 ENSRNOG00000033928 ENSRNOT00000045125 3 1 1 129 20 11612394 11612412 CAGTTGCTCTTCAGGTTGC 60 11612504 11612523 CACAGGAACACATATGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026236.1 ENSRNOG00000039287 ENSRNOT00000060162 1 1 1 80 16 68697934 68697952 CTGCTGCTACTGTTAGTGC 59 68697839 68697890 CAGCAGCACTAACACTACC 58 NA Rattus norvegicus 81 Tmem82 ENSRNOG00000011970 ENSRNOT00000016176 3 1 1 90 5 160171400 160171419 CTGGGTATCTTTGTCTCCCT 59 160171085 160171347 GTGGAAAGCCCTGTATCTG 58 NA Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051,ENSRNOT00000084974 1 2 2 70 16 70665537 70665555 ATAAGGACAAGCCCGTCTC 59 70661770 70661788 GTGAAGGAGAGGGAAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000079849 1 1 2 80 5 99102699 99103010 AGAAGGTTAGACTTAGGATGTG 57 99103048 99103069 CAGTATACCCTTTCCAGAAGTC 58 NA Rattus norvegicus 81 Pramef5 ENSRNOG00000047341 ENSRNOT00000079849 2 1 2 81 5 99102698 99103010 CAGAAGGTTAGACTTAGGATGTG 58 99103048 99103069 CAGTATACCCTTTCCAGAAGTC 58 NA Rattus norvegicus 81 AABR07054909.1 ENSRNOG00000047007 ENSRNOT00000073650 1 1 1 80 3 173371751 173371772 CCTTCTCAGAAGAGTCTCTACC 59 173371373 173371715 GTCTTCCCAAATGTATCCTATAGC 59 NA Rattus norvegicus 81 AABR07054909.1 ENSRNOG00000047007 ENSRNOT00000073650 2 1 1 80 3 173371757 173371778 CTGAATCCTTCTCAGAAGAGTC 58 173371379 173371721 CCAAATGTATCCTATAGCACTGAG 59 NA Rattus norvegicus 81 Clic4 ENSRNOG00000018109 ENSRNOT00000024464 1 1 1 80 5 153569097 153570028 CTTCACATTGTCAAGGTGGT 58 153569036 153569054 CAGGTATCTCCAGATGCCC 59 NA Rattus norvegicus 81 Cbfa2t2 ENSRNOG00000016352 ENSRNOT00000021907 2 1 1 80 3 150010506 150010525 CAGTTTGGCAATGACATCTC 58 150010568 150014224 TGTCACTGTTGAGTTCACC 58 NA Rattus norvegicus 81 Defb4 ENSRNOG00000013939 ENSRNOT00000058029 1 1 1 108 16 75634814 75637604 GCCTCTTTCAGCCTTTACTC 59 75634725 75634743 ACAAGTGCCAATCTGTCGA 60 NA Rattus norvegicus 81 Rem1 ENSRNOG00000007567 ENSRNOT00000010149 1 1 1 80 3 148110993 148115275 AGAAACTGGATGAAAGCTGG 58 148115318 148115336 GATCTGCGATGGAGTACAC 58 NA Rattus norvegicus 81 Bpifa2f ENSRNOG00000036870 ENSRNOT00000055345 2 1 1 82 3 149530984 149531004 TCAACTTAGCTCTGGACTCTG 59 149531048 149531769 GAGCACTGGACACAATTGG 59 NA Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 2 2 2 80 3 176915013 176925762 CGAGACTCAAATGTGGACC 58 176914951 176914969 ATGAGCATAGAGCTCTGCT 58 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 3 2 2 87 16 66230930 66230949 GAAGTGTCAATTCGAGAGGG 58 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280,ENSRNOT00000091265 2 2 2 80 3 80847936 80847954 TCCTCCAAGTGGTGTTTCC 60 80847199 80847750 ATAGTTGAGGTGCTCCTGG 59 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 3 2 2 80 3 65864533 65869283 TTAAGCCACCAAAGGTTACC 58 65869324 65869344 GAATATCCAGGCAGATGACTC 58 NA Rattus norvegicus 81 Arhgef10 ENSRNOG00000012561 ENSRNOT00000073971 3 1 1 80 16 79751817 79752265 GGAGCTATCAGAACTTAAACCA 58 79751758 79751779 CATCTTCTTTCCTCAGGATCAG 58 NA Rattus norvegicus 81 Erich1 ENSRNOG00000042114 ENSRNOT00000064468 2 1 1 91 16 80616338 80616356 AGACTCCAGCTTTGGACAC 60 80616409 80631362 CTTAATGTCACCAGCTGTCAG 59 NA Rattus norvegicus 81 Mcph1 ENSRNOG00000028586 ENSRNOT00000043384 2 1 1 80 16 76079501 76081511 CCTTCGAGTTCAGATGAATCC 59 76079441 76079462 CAGTTTCCTTTCTTGATCTCCA 58 NA Rattus norvegicus 81 Csmd1 ENSRNOG00000030719 ENSRNOT00000057897 3 1 1 80 16 78677305 78677326 CTTGGCAGAATTGTTTGATGGA 60 78677366 78678586 AGTGTTTCACCTGAATGGGA 59 NA Rattus norvegicus 81 LOC689713 ENSRNOG00000033703 ENSRNOT00000043188 2 1 1 80 16 84487920 84487938 GAACTCAGCCACAGAACCT 60 84487981 84492463 TTCTGGTGGTGTGATTCCTC 60 NA Rattus norvegicus 81 LOC100364509 ENSRNOG00000050067 ENSRNOT00000074978 1 1 1 60 16 61874364 61874387 GCTAAAGTTGATTGGAGAGTATGG 60 61874327 61874346 AAATTTGACCCTCCACACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d2 ENSRNOG00000019473 ENSRNOT00000026370 3 1 1 82 16 81609310 81611530 ATTTCTGCTGGAGCATCAC 58 81611576 81611594 CGTCTGCAATCATGTTTCC 57 NA Rattus norvegicus 81 Kcnb1 ENSRNOG00000046949 ENSRNOT00000074023 1 1 1 94 3 163935115 163935133 TTTGACAACACGTGCTGTG 60 163853543 163935057 ATGATGGCCAGGATCTTGG 60 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000058072,ENSRNOT00000089265 1 2 2 80 16 74913973 74915847 ACATCGAACTGATTATCACAGG 58 74915888 74915906 TGCCATTTGTCCTTGTGAG 58 NA Rattus norvegicus 81 Coprs ENSRNOG00000000111 ENSRNOT00000000123 1 1 1 80 16 80831077 80831628 TCCTTACGATGCTGATGAC 57 80831672 80831690 ATATCTCCTTGTGGTGCAC 57 NA Rattus norvegicus 81 Rtfdc1 ENSRNOG00000005083 ENSRNOT00000006884 1 1 1 80 3 170448085 170448107 GAACTACTGTACTCTAAGTCAGG 58 170448144 170448746 GCATCTTTGTTATACAGTCTGC 58 NA Rattus norvegicus 81 Nr1h3 ENSRNOG00000013172 ENSRNOT00000018154 2 1 1 80 3 80011157 80011691 GCCTACAGAACTTCGTCCA 59 80011095 80011114 CCACATACACTGCATAGCTC 59 NA Rattus norvegicus 81 Insl3 ENSRNOG00000018757 ENSRNOT00000025347 3 1 1 127 16 20122375 20122393 CTTCCTCACCAGGCTTCTC 60 20122483 20122502 AGCCCTACAATCCTTCAGTG 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000071923 3 1 2 80 19 36278294 36326961 GTACATAGTGACTGGACATCC 58 36278234 36278254 TCTCTTATGGATCTAGCCACC 59 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000082726 3 1 2 80 19 36270940 36326962 AGTACATAGCACCCTTCCT 57 36270878 36270898 GATTCATCAGATGAGGGAGTC 58 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000031743 1 1 2 118 2 186439635 186480157 TTGTGACTTTGGCTTTGGC 60 186439535 186439553 AGAGTAGTTGAGGAGCACG 59 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 3 3 3 141 5 171571046 171571439 AGCTTGTGAACACTCTTGC 59 171571544 171571562 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 1 2 3 82 15 34862328 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032714 TCTCAGTGACGATGTCCAG 59 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000087430 2 1 2 132 15 33756362 33756380 ATCATCAGCGTCAGTAGCA 59 33757607 33758567 CTGAGGATCCGGAACTGTC 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 2 2 2 81 2 178744933 178744953 CAATAAGGGCTTCTTTGACAG 57 178744995 178748146 TGCAGATTCAGGAAACTCTC 58 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 1 3 3 89 2 219086269 219094349 ACTACAAGTCTACACCTCCC 58 219086199 219086217 CATGTCATCGTCACAGCAG 59 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859 2 1 2 82 20 5540749 5540767 GTCCAGCCGAAACAAACTG 60 5540812 5546588 CCAAGTGGTATTCATGCTCG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 1 3 3 115 2 216493577 216498238 TTCCCAAAGTTTGCATCCTG 59 216493481 216493499 TGTTTAATGCTGCAGGCAC 60 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 3 1 5 80 X 26443967 26443985 ACCAGAGCATGATAAGGCA 59 26448509 26450396 TTTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056161 3 1 2 80 8 118148724 118148745 GAGCTACAGCCATATTCAATCC 59 118148785 118153782 TGAATCTGAACATTGCCACC 59 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000090705 2 1 2 92 2 248758803 248758821 GAACCTGAAGCTCCTCCAG 60 248758662 248758753 CTGTTTAGCCACTATAATGGTTCTC 60 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000045362 1 1 2 94 3 110556793 110556811 GATCTCTTGTGCTGAGCAG 58 110556699 110556722 GAATTCCAAAGCACGGGAG 59 NA Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000090588 3 1 2 91 8 62930842 62931168 CATCCAGTCCAGATGGAGAG 59 62931397 62931415 AGCCAGAGGGTAGTAGAGG 60 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065 3 1 2 80 1 56163457 56166045 GATTCCGTAACTTCACGGC 59 56163395 56163415 TTCACTTATCTGCTGGTCCAG 60 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 1 2 2 80 2 183529494 183534333 CAACACATATAAGTGTACTCGGC 60 183529436 183529455 GCTTCAAGTTCAAGGTCCAC 60 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777 2 1 2 98 X 29611076 29611096 AACATCTGCAACACCAATGAG 60 29608193 29609597 CATGTAGATCAGCAGGGCA 60 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076925,ENSRNOT00000076756,ENSRNOT00000018532 1 3 3 81 1 178388930 178390104 GCTGATTGATTCCTTAGAATGG 57 178390146 178390164 TGTATTAGGTCTGTCGCCT 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076756,ENSRNOT00000018532 1 2 3 81 1 178394366 178394386 GGAAGGGTGTCAAACATACAG 59 178394428 178401757 TTCATCATCCACGGTTTCTG 58 NA Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 1 2 2 80 2 46983766 46983785 CAATCAGTGGAGGATAGTGC 58 46983825 46987453 ATCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000079850 2 1 2 80 17 10138991 10139010 AGATTTGTGGAAGGATCGTG 58 10139051 10139552 TGGTATTGACTACTTGCAGTG 58 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000074298 3 1 2 82 1 212021555 212021810 CACTCAAGATGAAAGAGCCTG 59 212021493 212021511 CAGGAACTGAGTGACTGGT 59 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 1 3 3 80 9 8158119 8160745 GGAACATACAACCACTGCTG 59 8160787 8160806 CAAGATAATGGCTGCCACTG 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268 2 1 2 80 4 64474894 64474914 TCTAGTTGTTCGTGGAGACTG 60 64472380 64474853 GAAACTGACTGCAAGTCCTC 59 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152 1 1 2 81 11 46202502 46205911 GTATTCAGCTAGTTACAGCCAG 59 46205953 46205971 CTGGGAAGTTGGTTGTTGG 59 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000033010 2 1 2 80 X 40265814 40277886 GTTGCAAGTTGTGGTTCCT 59 40277929 40277948 ACACCACTAATGAGGACTGC 60 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 2 3 3 80 9 94953008 94953027 CAGAGAAAGAAGAGGCATCG 59 94953069 94955354 TCCTTGATAATGGTGCTGGA 59 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 1 2 2 82 9 63564835 63564853 AATGCCTTAAAGGAGCTGC 59 63558403 63564793 GATGAAATCATACTCTGGGAGAG 58 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000085905 1 1 2 80 X 22411489 22411617 CAATCTTCAGGTACAGGATCTC 58 22411430 22411450 GTGAAGTATGGGTTTGTCTGG 59 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 2 2 2 82 1 243386255 243386917 CCGGTCTCTATGTATGTCCA 58 243386960 243386980 TCCGTTCGAATCTTTATTCCC 58 NA InUTR Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 1 2 2 80 1 167489809 167506849 CATCAGAAGTGTATAACTGGACC 59 167506889 167506907 TCTCCTCATACTGTGGCAG 59 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002946 2 1 2 90 14 6931049 6931068 GAATCTCAGTCCCACAGAGG 60 6930260 6930998 ACCTTCGGTTTCTAATCCCTG 60 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000028763 1 1 2 198 1 222531359 222531377 CGAACTAATTTCCCACGGG 59 222528276 222531197 GTTCATTCAGGTTCCTGCG 59 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000085462 3 1 2 82 16 19044831 19047167 ATCCCATGTCAGAAATCCG 57 19047213 19047231 TGCCTCTTTGGTGATAGGA 58 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 1 2 2 105 1 243518368 243534147 AGTGGCAGATGAAGACCTC 59 243534216 243534234 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 3 2 2 80 1 189905628 189905648 TGAAGCTCTTGTTCTCAAGTC 58 189905463 189905586 AAGCCACAGAAAGATCTGG 57 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 2 1 1 67 4 120157482 120157500 GAGAACGGACATGAACGTG 59 120159004 120159022 GATCTTGGGATACCTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000022705 1 1 5 89 17 39413207 39413226 CGGAAGCATTTAACAGTGC 58 39413276 39414092 AGAATTGGTTCTGGAAGAACTC 58 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060 3 1 2 186 16 18974586 18974605 CTACCTGAAGTATGAGCCAG 57 18966240 18966522 AATCAAGTACCACACTCCG 57 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 1 1 2 61 8 91099640 91099660 GCCTCCTCAGATATTCAATGG 58 91160223 91160241 TAAGCTGACCCGTCAAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 3 2 2 80 1 83211326 83211344 TTCTCCAATGGGTTTGCCA 60 83211387 83211573 TACACCTCAGTGTTCTTGGG 59 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 1 3 3 80 X 37983847 38026664 AACCAATAAACGAGGAGAGC 58 37983786 37983805 TCAAGCTCATCGTCATTCTG 58 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000065211 1 1 2 95 2 187282004 187282026 CTGATGTCTCCCAGTCCTC 59 187282085 187282103 CATTGCCCTTCTTGTCACC 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214 3 1 2 87 1 80172763 80172888 GAAGAACAGCTCTTCCAGGA 60 80172695 80172713 GGAGTCATCACTGGAGCTG 60 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 3 2 2 83 11 57489212 57492715 CTTTATCAGGTTTGACTACTCTGG 59 57492756 57492775 ACATCCTTTCTCCACTTCCC 60 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000041271 3 1 3 80 5 48284404 48284422 GGAATCGATTCAAGCCAGG 59 48284465 48285690 AGATGAATTGACTTCGGCCT 60 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 3 2 2 80 1 80710176 80710195 AGCATCCTACAGACCATTCC 59 80708335 80710133 GTAGAGGAAGATGCCGTCC 60 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 1 2 2 80 1 257390511 257393468 TATGTCAGCTTCTATCAGGAGG 59 257393507 257393527 TCTCCTACCACCAAACAACTC 60 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000011340 2 1 4 87 10 39212474 39220271 TCTCAGACAGGTTTGGTCG 59 39212405 39212423 TTCACAGAGAAGAGCTGCA 59 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650 3 1 2 83 1 220244975 220246091 GTGAAAGACCTCAGTGTAGAC 58 220246135 220246154 CAAATCCGCCTCTTTCTGAG 59 NA Rattus norvegicus 81 Rab1a ENSRNOG00000004992 ENSRNOT00000021040 2 1 2 80 14 104499529 104500359 GTCAAGCAGTCAGACTTCAC 59 104500402 104500420 AGATGAAGCGCTAAGAAGC 58 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 1 2 2 80 1 86981633 86981651 GAAACACAGCTGGATGTGG 59 86981691 86981842 GGTAAGATAATACCCAGCTTCTC 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492 2 1 2 84 3 151359872 151359890 TGGAGAGTGTCTTCAAGCT 58 151357130 151359825 CATGTGAGGCTGTCAATGAG 59 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000074278 1 1 2 80 2 173834560 173835737 GGGATATAACTGGAAAGGTGC 59 173834500 173834518 CACATGCATTAGCAGGTCG 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927 3 1 2 80 18 37943308 37951075 GGCACCAGAATGTTAAAGGC 60 37941846 37941867 GTAGTCTAGTTCTTCCTCCAGG 59 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 3 2 2 80 13 89392369 89395472 AAGCATAGGAGATCCGACG 59 89395514 89395534 AACAAGAGTCCTATCAGCAGG 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 1 3 3 80 15 45505722 45505740 GATCCAGAACCTGAATGCC 58 45503369 45505680 GGAGTACATACTTCCTTCCCA 59 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 3 2 2 80 17 15999697 15999715 AACCACAAGATGGTGACCT 59 15999756 16002413 GTCATGCTCTACCATGTATGTG 59 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449 2 1 2 80 16 83017031 83019469 AGACCCTGAACTCAACATGG 60 83016970 83016991 AGTCTAGACTTGATTGGTCGTC 60 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161 2 1 2 171 8 96026393 96026413 GTCACTCATAACCCTTCTCAG 58 96023448 96023474 ACTTATACTTTCAAAGGGTGCC 59 NA Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 3 2 2 83 8 11904563 11909128 TTTGTATGCTGGCAAGAGGA 60 11909171 11909192 GGTTGAATAAAGCGATCATCCA 59 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 1 2 2 80 12 12724614 12724633 CCTTGATGGGAATGTTCGAC 59 12722469 12724575 CTAAGTTACCTTCGACATTCAGC 60 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 2 2 2 83 3 44081639 44084950 TTTCCAAGAAGGGCATCCA 59 44081574 44081595 TGGACAATTCTTTCCTTCTGTC 59 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 3 2 2 80 6 49529802 49530694 AGTGATCATGGAGACGGAC 59 49530737 49530756 CATGTGAGAAGTAGGCACAG 58 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000065753 1 1 2 80 7 145088599 145088737 AGACTATGCTGACTCCATCG 59 145088778 145088798 ATCACTTTGATGTGTCTTCGG 59 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 3 2 2 105 6 27155931 27189840 ACCACAATCGGCTATGGTC 60 27155844 27155865 TCTGGAACATGACTAGTGTGAG 60 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000018014 1 1 2 84 9 65340398 65342515 GGACCTTAGAGTCTCCAGTC 59 65342562 65342580 TAAAGGTCGGCCTCTACTC 58 NA Rattus norvegicus 81 Ankhd1 ENSRNOG00000030247 ENSRNOT00000082079 2 1 3 80 18 29487828 29487846 CACCTCAGCTAACCAGACC 60 29487889 29492126 GTAGATGATCCTGGTGCCTC 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162 3 2 3 80 10 38891203 38891224 GTTCATCTCAAACTGACCATCG 60 38891263 38891605 AACTATGGGCCTGTAACTGTC 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000083162 2 1 3 92 10 38894546 38905203 AGGACAAGAAGAACAGATCAG 58 38905257 38905275 GTTCCACATTTGCTTTGGT 57 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000078619 2 1 3 107 1 220855178 220857628 TTGCCGGGACATAGATGAG 59 220857699 220857717 TTAGGTCCCAACTGGAAGC 59 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000010789 3 1 2 139 5 24489263 24491816 ATTGTGTTGAACATGCTGCT 59 24488895 24489165 CTAATTGCCCATCTGTTGTAGAG 59 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 3 1 2 103 1 267607702 267607720 TCTGTCCCTTTGCTCAGAG 59 267608875 267608895 CTGTTTAAGATGTCACTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 1 2 2 80 3 124097253 124097417 GTACCTGAAGGTGGAGAGC 60 124097461 124097479 TCCGTCCATTCTCCAAAGG 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000011166,ENSRNOT00000082359 2 2 5 80 4 22376329 22378006 TCATGACTCAGACAGCAGG 59 22376267 22376288 TGTCCACATTATCAATTCCGTC 59 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 2 2 2 81 14 7738210 7738588 ATGCCTAAAGCCTGGAGAC 60 7738147 7738165 AATGTCAACTGCAGCATGG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 3 2 5 87 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729171 19730712 TTTGGTTATGCAAATCGCTC 58 NA Rattus norvegicus 81 Cacfd1 ENSRNOG00000005840 ENSRNOT00000007677,ENSRNOT00000083078 1 2 2 80 3 5561761 5561779 CTGTGCCATCTCTGGACTC 60 5561822 5562850 GCGTTCATGATCATCCACAC 60 NA Rattus norvegicus 81 Stx5 ENSRNOG00000018847 ENSRNOT00000025664 2 1 1 81 1 224949044 224954931 GGAAACAATTCAGAGGATTGAC 58 224954970 224954991 GTACTTGAGGATCTCTGAATGG 58 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 2 2 2 80 9 61922579 61922600 CAGTAGAGATTGCACAAGATGG 59 61916078 61922540 CAGAATAAGGCTCTGGAACTG 59 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 3 1 1 78 1 94760651 94760669 CCAGACACCAGTCTTCTGG 60 94759389 94759407 CCAACAGACAGAGTGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Sdr16c6 ENSRNOG00000040151 ENSRNOT00000080197 1 1 2 124 5 16975564 16975582 CTTACCTCTCCTGGAGCAG 59 16973156 16975476 TTCGGCTCTCCTGTTTGAG 60 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 2 1 1 148 10 103873189 103873207 TATCTGGAGCTCCTCAAGG 58 103870582 103870600 TCACACTTATCCGGGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000030461 1 1 2 82 1 211368573 211368591 TGTCTACCATCTGCACCAG 59 211368636 211378117 TTATCTCCTCCATCAGCCTG 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570 1 1 2 80 18 51492344 51560425 GTTTCTCAGCTCAGAGGCT 59 51560469 51560487 GAGGTAGGAGATTGGGCTG 59 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000042754 3 1 2 86 11 57457812 57460552 AGTTCAGAGCACTTTAGAAGC 58 57460600 57460618 TTTCTTTCGAGGCAGAGTG 58 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000079035 2 1 2 85 17 45446847 45446867 TTATGGCTTTGGCTCAGGA 59 45445269 45445287 GTACTCATAGACGGTGCCA 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000080655 1 1 2 81 17 45255680 45255698 AGTAGCCAGATGGAGTCCA 60 45255739 45256025 GGGTGACTACTCTAACTTCTGAG 60 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 3 2 2 80 7 116703257 116707140 GGCAGAAGGAAATGACAGC 59 116703195 116703213 AGTGCCTATGGATCTCCGA 60 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 1 3 9 99 20 2087658 2087969 TTCTGAGCACTTGAAAGCG 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000080381,ENSRNOT00000089216,ENSRNOT00000077991 3 3 9 108 20 2083571 2088291 CAAGTTAAGATTGGCTTGGG 57 2079778 2079797 TGGGAGTTGTAATTCTGGTC 57 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000089216 2 1 9 86 20 2077532 2078843 GCAGTACAAGGAATCTTCTATCC 59 2077468 2077487 CAGATAGTGACTGTCCCAGG 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000041631,ENSRNOT00000027918 1 3 4 80 15 34751610 34794199 TGGAGCTGAGGAGATTATCG 59 34794240 34794260 TCAGTGACGATCTTCAGAAGG 60 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 3 2 4 80 15 34752192 34752210 TCATGTGACCTTCTGTGGT 59 34752252 34753084 GTGATTTCCCTTCCATGACAG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 2 2 2 80 3 46305799 46308048 CACTGTCAGATTCTTCTTGGAG 59 46308086 46308107 TCAAGTCTGTTCCAAATGAACC 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000089006 3 1 2 129 14 79938592 79938611 CTTTATGAACAGGAGGGCAG 58 79933544 79938500 TTTGTTCTTCAACGAGCCG 59 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 3 3 3 90 17 47320790 47320836 AGAAGAACCTGACCCTTTGG 60 47320884 47321921 GTCCATATACTCTTGCAAACTGTC 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073 1 1 4 80 3 8470139 8474435 AGGATTGTCAGGATTCCGAG 59 8474478 8474496 CTTTCTCTGAGTCGGCCTC 60 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000087547 2 1 4 80 X 54231717 54231735 TCTGTAGTCTGCCTTTGGG 59 54229835 54231675 ATGGGATACCTGAGATGTACC 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249,ENSRNOT00000087919 2 3 4 85 X 54259441 54262385 TATGGCCTAATGAAAGCTGG 58 54258975 54258993 ATTTGTCCCACCAAAGCAG 59 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621 3 1 2 96 12 52068980 52068998 AGTGTGGCTGAATTCTCCT 59 52068450 52068920 CTGTTCTCCCTACCAGCTG 60 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 1 2 2 80 10 40563931 40565137 CATTGTCCAGAGGATCCCA 59 40565181 40565199 GCTGTGCCAAAGAACAGAG 60 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000078039 1 1 3 80 1 32092719 32093424 TTTCAGCCTAAAGCCAGAG 58 32089808 32089826 ACACCATTGAGCTTCACAG 58 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000082192 1 1 2 132 1 188693805 188693823 TTGGAGCAAAGATCCAGCA 60 188692426 188693709 CAGTTGGGATAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056693 1 2 5 80 12 52397971 52398133 TTTACTTCGTGTGGTACGTC 58 52398176 52398194 TGGTGATGATGGAGCTCTC 59 NA Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 3 2 2 94 15 55421916 55423682 GAATTTGGTGAGACCTGGG 58 55421840 55421858 TTTACCACCGAAGCAAAGC 59 NA Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 3 2 2 82 4 157355825 157355957 ACACCACCAATAAGGTGCA 60 157355761 157355779 CACGAAGTTCCCTGATGGT 60 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000092189 1 1 2 80 10 40913745 40953429 GACCATTGTATTCTTCAGGTCC 59 40913686 40913704 TTGTCTCGGCGATAGAACC 60 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889 1 1 2 84 10 40920162 40953421 TATTCTTCAGCCTTGCTGC 58 40920096 40920114 TTATCCAGGAAGTCCGAGG 58 NA Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 2 2 2 80 9 11180005 11180023 TGCACATGAATGATGGGAG 58 11174733 11179963 CAGATCCATATACTGTGAGCG 58 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 1 2 2 80 4 182594137 182594157 AAAGAGTTAGATGCCTTTCCC 58 182592588 182594098 TGCTATTAGAGAAACTGTTCCC 58 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 3 2 2 80 5 152375722 152375740 CAGCTCATCAGGGAGTCTC 59 152371302 152375680 ACCTTTAACCCTTTCCTCCTG 60 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965 2 1 5 110 X 64275182 64275848 CGTCTAAACAGAAAGTAACCCA 59 64272981 64272999 TAGGAAGGTGGAACTGAGC 59 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091 3 1 2 86 3 107564481 107565838 GTCAAATCGAGCAGTGAGC 59 107564413 107564431 ATGTGTTGCTGACCATCCA 60 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448 3 2 4 80 7 64722481 64722501 ATGAGCATCCTTAAACAGTGC 59 64722541 64754445 TGTTGCTACAGAATCCATCAC 59 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 3 2 2 80 5 167173268 167173383 CCCATTCATTCAAGTGGGC 59 167173425 167173445 AAGATGTAGATGGTGGTGAGG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000055473 3 1 3 85 4 181148155 181148397 CCTCTGAAGAGGCATTCAG 58 181152759 181152777 CTGAACAATCACTCCAGCC 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000087597 3 1 2 62 16 19637823 19637841 GATGGAGGAGACCTTCAGG 59 19637565 19637586 TCTATGTTCTGGTCTTCTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312 2 1 2 82 3 111444239 111450081 AATTCCACTGCAGGAAAGC 59 111450127 111450145 AGGGTAACTCTGCTCACAC 59 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829 2 1 2 86 17 43500370 43500388 AGCTTGAAATCCAAAGGCA 58 43499607 43500321 TTCTCCAATCCTCAATGCAC 58 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000033068 3 1 3 80 9 65162024 65162494 CTGGATATTTCAAAGGCTACCAG 59 65162533 65162552 CGCCATAGACATAGTACGGG 60 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000009660 2 1 3 83 6 8344422 8344440 GCTAACCAAGTGTCTGCAG 59 8337408 8344376 CTCTCCTTCAGTGAGAAGCT 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 1 2 3 80 9 10707117 10707515 CAACAGTGAGAAGTACTGTACC 59 10707058 10707077 ACAAAGGTCAGGTTCTTCCA 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 2 2 3 80 9 10687252 10687271 TCCTAAGGCACAAGATGACG 60 10683947 10687209 CTTCCTGTGTAATCCGGCT 60 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 3 1 1 61 20 7219421 7219439 ACAAGAACGTTCCCAACCT 60 7219300 7219319 GTAGCCTCGAGACTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642 1 1 3 80 18 39470829 39474232 AAGCTATTCATCAAGCTCGG 58 39476859 39476878 CCACTAGAGTATTCGCTTGG 58 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076520,ENSRNOT00000075125 1 2 5 80 15 10263135 10263915 AAACAGCCAGCAAGAAACC 59 10263073 10263093 CAGAAGTGAAGTCTGAAGGGA 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000078765 3 1 3 80 8 1611901 1611920 AGATATGCCTACTCTTGGCA 58 1610417 1611861 TTCATCAGAGGCATAATTGTGG 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887,ENSRNOT00000012588 2 2 2 80 4 179500994 179512375 GATCCTACGATAGAGGACTCC 58 179500934 179500953 TGCTGTGTCGAGAATATCCA 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887 3 1 2 88 4 179498595 179498613 CAGTAGACACGAAACAGGC 59 179486810 179498543 GTCAACACCCTGTCTTGTC 58 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000012988 3 1 2 80 15 37702521 37702539 GAGTTGGAGAATGACACGG 58 37702581 37706302 TGGTATCTTTGCAGTTACTGG 58 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000079874 2 1 2 198 14 104250831 104268379 AGTGACAGCTATATTGTGCG 58 104268537 104274877 CATAGCATTCCAATACAACCAG 58 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 3 3 3 83 17 43667354 43667373 AAGTGGGATCACCATTTGTG 59 43667419 43668789 ATGGTTCCTCCTGAAACCT 58 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000037028 2 1 2 80 8 66870167 66870187 GCCTCTAATGTGCAAACTGAG 60 66870083 66870130 CATGTACTTCTCACACTTAGACAC 59 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000068410 1 1 2 91 4 22970355 22970373 GGAATAATTGCTGGCACCA 59 22975179 22982551 CCATTTGACCTCTGTTCTCG 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000064331 1 1 2 80 17 55269464 55270582 TCTAATCTGCTCTGGGAACC 59 55269403 55269424 TACAAAGGACAGGTGTTTATGG 58 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171,ENSRNOT00000078415 2 2 2 169 10 29177397 29179206 ATCCTGCTGGTAGCATATGAC 60 29179337 29179355 CTCTGGAACTGGGCTAGTG 60 NA InUTR Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000082239 3 1 2 97 5 101563363 101563381 CTCACAGGAGGAACATGCT 59 101562300 101563302 TGTTGTTTGGTGCTCAGTC 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000089005 2 2 3 92 20 13971558 13971576 TATCATCTTCGGAGGCCTG 59 13971632 13971797 CTCCACAAGTTCCTGTTGC 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 2 3 3 80 18 31077936 31077957 AGAGTTTCAATATCCCTCTCCT 58 31077780 31077895 TTTCATATGTCCAGCACCG 58 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 2 2 2 80 4 133318859 133318879 AACAAATGGTTTGCCTGAGAG 60 133318917 133319612 GAAGAATCACTGTGTCCTTTCTC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912 3 2 3 91 20 2205975 2206407 GACTTCGCCAACAAGTACC 59 2205902 2205922 TTATCTGAGAATTCTCCCGCT 59 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 2 2 2 115 7 104525511 104527565 ATTAATAACGTCCCGGCAG 58 104525414 104525432 GTTGTTGCGTCACTTAAGG 57 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 2 4 4 80 5 116637620 116652350 AAGAGTGTCACAAACACCA 57 116652391 116652412 CTGTAGTATGAGGAACTTTCCA 57 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 3 4 4 81 5 116637619 116652350 TAAGAGTGTCACAAACACCA 57 116652391 116652412 CTGTAGTATGAGGAACTTTCCA 57 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000004017 2 3 4 80 5 116652392 116652413 GGAAAGTTCCTCATACTACAGC 59 116652454 116658826 TTGGTAGAGCTGGTAGAGG 58 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089 3 1 4 150 5 116705256 116705275 CCAACCACATCAACAGAAGG 59 116720811 116721036 CCCAATACCATAACTGTGTCTG 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 1 3 3 84 7 2907679 2907935 AAGAGCGATGAGATGAATGTG 59 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622 2 1 2 80 8 69072600 69072619 GAAGGAACTACAAGTCAGCC 58 69072662 69072902 ACCTGTTCAGCTCTGATCC 59 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 2 2 3 90 1 197549471 197549489 AAACCTTCTACCTCCTGCA 58 197549110 197549418 ACATGAGACCTCTCATCGAG 59 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 3 4 7 82 20 2517188 2517356 AATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 3 1 1 145 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565087 105565105 CCCTTCTGACCTTTAGCAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891 2 1 2 166 19 37204577 37204598 CCGAAATATGCACAACCTACAG 60 37206280 37215173 CCACTGAATCTCAAAGATCATCC 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000085265 2 1 3 80 14 86218586 86219917 CGGCATTAAGGAATCTTCCG 59 86211886 86211905 TTGATGATTTCCTGCTTCCG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421 3 2 4 101 10 1312751 1312770 AGACGGATTACTGTGCAGAC 60 1309762 1312687 TATCTGAGGCACTTCCTGC 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 3 1 1 74 20 2541198 2541216 ATACACATGCCATGTGGAG 58 2541020 2541038 GGCATACTGGACTGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 2 2 2 80 13 41706956 41706977 AGGAATTCTCCATTGATGTTGG 59 41699659 41706918 AATCTGGATTAGCAAACTCTGG 59 NA Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 2 2 2 80 2 198291941 198291961 TGATCAAACTTGCCTCAAGTG 59 198292002 198292409 CTTCTGAACTCTCCACTCCT 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 2 2 4 80 2 9465208 9465228 GGAAATATCACCTTTCCACCC 59 9463421 9465167 ATCATTCTCTGGTACCTCGT 58 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625 3 1 2 83 X 82644542 82644562 ACCCTTGGATAACCCAAAGAG 60 82643430 82644498 CCACTGCTTCCATAACAACC 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000088197 1 1 2 84 14 76793195 76799192 AGACTTCAGTAAGAACACGTC 58 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000066137 2 1 2 89 10 105752612 105752630 CTTTAAGTACAGCCCTGGG 58 105751467 105752559 AGCTCAATCCTCTGTTCCT 58 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 2 2 2 112 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863378 102873768 TTCTTCTCATCCTGACGGTC 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187,ENSRNOT00000020160 3 3 7 80 17 57033685 57050879 TAGCTCAGGTTTCTGTAGCT 58 57050922 57050940 TTTGGCCTGAAGGTAACTG 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000084632 1 3 5 80 X 63806025 63806048 GAGATATCATCCGAGAATACACTG 59 63805819 63805989 TTCCAAATTTCTTCTCCAGGAC 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076320 2 1 5 80 13 77940814 77940835 GTACAAAGAGACTGAAAGGGAC 59 77940874 77942284 GAGGAACTGCTCGAAATTCTG 59 NA Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 2 2 2 80 5 67900755 67985208 TTGTTGAGCTTGTCATCATGG 59 67900695 67900714 GGATATGCACCTGAAAGGTG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000065011 1 1 2 80 1 88725220 88725240 AATATGAAGCACATCGTGTCC 59 88724387 88725180 CACCACAATGTCTTTCTTCCA 59 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050 1 1 2 95 14 35085621 35087228 CAGCAAAGAGCAAATCCAG 57 35085544 35085563 AGAACCATCACAATGATCCC 58 NA Rattus norvegicus 81 Paqr4 ENSRNOG00000003721 ENSRNOT00000005220 3 1 1 79 10 13075404 13075422 TACCTACACAACGAGCTGG 59 13073838 13073856 ATGGTCATTGGCACTAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759 2 1 2 111 10 65495515 65496569 GAGGATGATGGTGAGGAGG 59 65495422 65495440 CATCCTCCTCTCCTTCCTC 58 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892 2 1 3 80 18 57654317 57727192 GACTTGATGCTAATGTGAGTTCC 60 57727231 57727250 TAACCATTGCGAAGAACGTG 59 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 1 2 2 81 5 48775561 48775579 ACAGCTGGGTCTTCATGAG 59 48775624 48776832 ATACTATTGCACACGGCCA 60 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 3 2 2 81 1 185478309 185479014 GACCCAAGATCATCAAGTCC 58 185479057 185479076 GGAACATTAAGGTTCCTCCG 58 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000049391 3 1 2 80 17 63849454 63860376 GATGAGATTGACTGGGAAACAG 59 63849395 63849415 GTCACATATCAACACCTCTCC 58 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057988,ENSRNOT00000088393 3 2 5 81 1 79685410 79685430 TTCTACACCCTACGAACTCTG 59 79684584 79685367 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Zfp597 ENSRNOG00000007576 ENSRNOT00000045192 1 1 1 85 10 11913368 11913386 CAGAAGACCCTCAGCAGAG 60 11916808 11916826 TTCTGACTGGTCTCAGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509 1 1 2 90 3 8949320 8949554 TCTTCAAGCACCAGATTGTG 59 8949607 8949625 ATGTCTTCTGCTAGGGCTG 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 2 4 6 80 14 44526462 44526480 GGGTCTCTGGTTGAAATCC 58 44526524 44526856 AGAACAAGCAACACCTGTC 58 NA Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000035894 2 1 2 156 10 82864257 82864277 ATGGAGAATAAGACCACATGG 58 82857125 82858268 AGAAGTCACACTTCCACAG 57 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 2 2 2 88 10 105235581 105235599 GCAAGGCTGTTCATTTCCT 59 105235651 105236676 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000005637 2 1 2 80 6 54549981 54550004 AGTTAGAAGCAGTCAGAGATAAGG 60 54550041 54554510 GCATATAATCATCACCGGCTG 59 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 2 2 3 81 8 107522047 107525332 TTGGATAAACAGCAGTGTGG 59 107525376 107525394 TATAGGTTGGTGAGACGCC 59 NA Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000019396 2 1 2 82 17 52555004 52555022 AGTTCCATTGCGAAGTGTC 59 52477565 52554961 CTTTCATCCTCATTTGAAGTGG 58 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 3 2 2 80 3 48508582 48508600 ACACTATCTACCCACACCA 57 48506646 48508540 AGGTGAAATAGTAGTCACTCG 57 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 3 3 3 82 3 93926445 93926463 CTACTACAAGCTGGGACGG 60 93930933 93930951 TGTCACAGGAAGCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 3 1 4 134 5 78378402 78378421 ATTCTTTAGCAGTCTGCGGA 60 78373769 78373787 GAAAGTAGCCACTGTGCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000040701 2 1 2 92 2 60953048 60953066 AGCTGCCAAGTAATGATCC 58 60953119 60953302 GAATCCTACCTTCCTTAGTGTC 58 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000043661 1 1 2 81 3 9434568 9447758 CATTTATGGAAGCCCTGCAG 59 9434506 9434524 TTGGAGTTCCATCGAGCTG 60 NA Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000082688 3 1 2 94 15 87776861 87777266 AGCAGAAGAGGTAAAGACCT 58 87778446 87778464 TTAATCAGTCCACCGAGGT 58 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000078754 3 1 2 84 1 214323079 214324994 GCTCAGCTATACCTAGGCAC 60 214325041 214325059 CACTGACTGCTGTGAATGC 60 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000061525 2 1 7 81 15 5417534 5417552 AAGCTCCTTCAGAAGGAGG 59 5416721 5417491 GAATAAACCAAGACAGGAGGC 59 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000073865,ENSRNOT00000063883 1 2 3 80 11 71027571 71030014 CTATGACAGACACAGGTCG 57 71027509 71027527 GCTGTCTTGCTATGGAGTC 58 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000073865,ENSRNOT00000063883 3 2 3 98 11 71027570 71030013 TATGACAGACACAGGTCGC 60 71027490 71027509 AATCTCAGCTCTTCTTCCCG 60 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613 2 1 2 85 13 91852605 91872886 ATCTTTCCCAGGACGATAGC 59 91852539 91852557 TTTCACTTGGCACTTGAGC 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000072536 3 1 2 80 16 20806739 20806758 ACAGATGCTTCGAGAACTCC 60 20806259 20806696 ATCTCCTTGACCTGCTGTC 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 3 2 3 84 3 57837674 57840096 ATTCCGATTTGGGACGAGG 60 57840142 57840162 TATGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123 1 1 3 121 4 99799984 99800005 GAAATGGTTCCTCAGATTTGGA 59 99798444 99799405 GCTGAGAGGATCTCTGGTG 59 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000082196 2 1 2 98 15 4895579 4895597 ACTTCTACCACACGGACTG 59 4894711 4894730 AGAGGTGAGACTGTTCAGG 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 81 1 257876099 257878443 TCTCTACATCTTTCAGAAGGGTG 60 257878479 257878502 GTCAGGTCTGTAACATGTATATGC 60 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000010910 3 1 2 102 13 113915555 113927695 AGTTCTTGAGCTTTCTTGTGAC 59 113915474 113915492 ACAAGTGTACCTCACGACC 59 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000044145 2 1 2 88 1 88189751 88189770 GCTCCAGACCTCTACATTCC 60 88189930 88190773 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313 1 1 2 83 13 105071381 105123696 TCTGTGGGTACCTTGATGC 59 105071316 105071336 TCTCCATTGTTGAGACATCGA 59 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 1 2 2 80 X 65600082 65601034 AGATGGCAAGCAGAAAGGA 59 65601078 65601096 TTGTTGTACCAGCTCTCGT 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 1 2 2 80 7 35086882 35090770 GGATGAAGCAAGACTCCGT 60 35090814 35090832 TAGAAGCTGCACAGTTGGA 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000090799 2 1 6 80 5 47987067 47987731 GGAGATTCTATCCATCATTGTTGAG 60 47987768 47987787 TCATCTTCCAGGTCTCTTCC 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 3 4 8 62 20 1983257 1983275 CCTGGACGGATATGGACAC 60 1982464 1982484 GGGTCAAATAAGACTTGGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 3 2 8 157 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979762 1979782 ATAAGCTTGAGCTCGTAGTCC 60 NA InUTR Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000086745 1 1 3 80 3 93690251 93690272 AAGAAGATAAAGAGTGGGACCT 59 93690190 93690210 GTAGCGAATGTTTGTGCTG 58 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255 3 1 5 114 4 140269796 140269814 CAGTGGTAAGCACTCTGAG 58 140269892 140272579 ATCAACCAAGCAGGAAGAG 57 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 1 2 2 96 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879512 142879530 ATCCACGCCACTAATCTCC 59 NA Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 3 2 2 80 X 68630152 68631796 TCACTTGCATTGATGCTACAG 59 68631836 68631856 AACGAACACTTCTGCAAACTC 60 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977 3 1 2 80 14 45856714 45856732 GCGACTGCATTTATCAGCC 60 45856237 45856671 CACTGTGTAAGGCACAAAGG 60 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138 1 1 2 80 5 171268494 171269602 AAGTACAACGTAAATCAGGTGG 59 171269643 171269661 AGTATTGCTTTCATCGCCC 58 NA Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 3 1 1 78 1 229938563 229938581 GATGCTTGACAAGTTGCTG 58 229938626 229938644 CATCAGTCGAGACTCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 1 2 2 80 16 18699876 18704782 TCTAAGACTCAGGTAACAGTTCAG 60 18704821 18704839 AGAGATGACGATGGTGTGG 59 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 3 2 2 128 20 7296596 7298838 TGAATATCACAGCCGACCC 60 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000009400 3 1 2 80 X 115764022 115764044 ACAATGTCAACATCTGCATGG 60 115763962 115763986 CCATGATCTCTAAGTTCTCATTCTC 59 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 2 2 3 80 2 195883206 195883226 CTCCGGGAGGATATAAGTAGC 59 195880868 195883167 TTCTAGTACCACCTGTATCTCC 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000013026 2 1 3 105 6 107283897 107283915 AGATCACCAGTGCCTTCAC 60 107280629 107283827 GTCCCTAGAACCACAGGAG 59 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045 1 1 2 98 10 61209961 61209979 TCGGTGTACACCACTTTCC 60 61207916 61209901 AATATGTCGCTTTCTCTGCTG 59 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000092203 2 1 2 80 10 61232691 61233526 AAGAACAAGGAGGACTATATCCC 59 61232293 61232313 CAGGATGATCTGAGGGTATGG 60 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 2 2 4 100 14 85876551 85876569 TGAAAGTTCTCAGCTGTCG 58 85879265 85879283 TCTCAGACAGGAGACAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000002030 2 1 3 85 12 25511226 25513253 GACTTGAACTCAGTAATGTGGG 59 25511162 25511180 GAAGAAATACGCTCGCTCC 59 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390 1 1 2 80 1 214477323 214485879 GGAGCCAGGTACATACAGAC 60 214477262 214477281 CTCAAAGAAGTGTTCCGCAG 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 2 2 4 86 15 8920795 8920813 ATGAGCTCTGCGTAGTGTG 60 8914483 8920747 TTCTAAAGAAACCCTTGCAGC 59 NA Rattus norvegicus 81 AC128759.2 ENSRNOG00000039872 ENSRNOT00000061221 3 1 1 63 1 22431438 22431456 CAGAGATCTGCTCTCAGCC 60 22431391 22431409 GTATGGGCTCCTGACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 3 2 2 82 1 266115658 266115676 CTTGGGTCAGTATCTCCGG 59 266115721 266117042 AGTGAAACACCTGTACCAGG 60 NA Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000009879 2 1 2 165 5 138246013 138246126 CAAGGTCAGAGCTGATCAG 58 138246254 138250949 GAGAGCATAGATCTCTGCTC 57 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000048592 2 1 4 84 1 265552642 265560295 TGTCTCCTTGGAAGACAGC 59 265552576 265552594 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890 3 1 3 82 18 60496833 60572939 AAAGCATATTGCCAGTGACC 59 60572984 60573002 TAGTCTGAACCAGAGCGAG 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 1 2 3 80 X 65083768 65087330 ACTAAGCTCTGATGATGTACGA 59 65083709 65083727 ATAAGCTCTGTTGGGTCCT 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 2 2 3 80 X 65083768 65087330 ACTAAGCTCTGATGATGTACGA 59 65083709 65083728 ATAAGCTCTGTTGGGTCCTC 59 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000089222 1 1 2 88 2 243464070 243469412 CATCCAAGGTTTGAACAACGT 60 243464002 243464020 AAGGACTTAACTGGCGAGG 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000092002 3 1 2 83 15 4883229 4883968 GCAGCAGGATGAAACAGAG 59 4884011 4884033 CCTCTGTCTTCAATCTTGTAGTG 59 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291 1 1 2 81 7 35383433 35531261 GAGTGAAGGTAGAACGCCA 59 35531306 35531324 TTGAGGTTGGTGTCTGACC 60 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 3 2 2 80 6 55482107 55484780 GAATTGTGTTTGTGGACCCT 59 55484823 55484841 GTTCGTAAGCGTAGAGACG 58 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 2 2 3 80 15 60745330 60746561 CTAAATCAGAGTCACCATTCAGG 59 60745272 60745295 GATGAAATCAATTCTGAGTCCTGG 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81636986 81637007 CCACAAGATACTCCAATGAGTC 59 81635619 81636945 TATATGCCGAAGAGACGGA 58 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 3 3 3 80 8 100036605 100036626 AGTCCTGATGGATACTATGCTC 59 100036663 100038878 TGGGACATTCCATATTCCTACTC 60 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 3 2 3 93 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038992 100040214 CTTTGTAAGGTCATGTCTCGA 58 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 2 2 2 80 18 63388242 63388261 TGGAATGGAGATCTGTTCTG 57 63384949 63388199 TTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305 1 1 2 129 12 2145515 2145533 AGAACAAGAAGCAACCCAG 58 2148026 2148308 GCGGTATCGAATCATAGGG 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305 3 1 2 130 12 2145514 2145532 CAGAACAAGAAGCAACCCA 58 2148026 2148308 GCGGTATCGAATCATAGGG 58 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287 2 1 2 86 20 27720965 27728772 AACTACAGGTTGGTGAAAGAC 58 27720899 27720918 TAAGAAGTCATACGCAGTGG 58 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 1 2 2 80 18 64053897 64057243 GCCATGTTTAAGATCGCCA 59 64053835 64053854 ACTTCGCAGATACTTCACAG 58 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 80 4 14166253 14166274 ATCCATTCTTGAGTTTGGTTCC 59 14166309 14169640 CTCCATCTACAGTGTTATTGTAAGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 80 4 14177575 14184198 CTCTGACATTTGCAGGTCC 59 14184241 14184260 AGAACAAATCTGTACACGGG 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 2 2 2 80 2 173472398 173475434 AACATCCACAGTTTCAGAAGAC 59 173472339 173472360 TTCAAGACATCGGTATTACCAG 58 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306 3 1 2 80 7 116960403 116960510 ATTGATGAGACCATGATCCAC 58 116960343 116960362 CACGTCAATCATCCTCTTGG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488 1 1 6 80 4 154554041 154554795 CACTCCCAGACACAGATCC 60 154554836 154554857 TTCCTCCTTGCTCTATGTTCTC 60 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 2 2 2 66 15 19727787 19727805 GACAGAGACTGGTGTCGTC 60 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 2 2 2 80 4 89165557 89165577 CCACTGTGAAACTATTCTGGG 59 89165619 89167470 TGCCTGTCAGGAACAAGAG 60 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000086036 2 2 3 81 10 65588747 65589005 GTTTGTTACAGAGAAGGTCCTG 59 65589047 65589065 CTTGAGGAGAGTCCCTTCC 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 1 3 3 80 10 84630213 84631885 GGAGACCAACTTAACAGTTGC 60 84630153 84630173 CTTCTCTTCACTGAGAGGTGG 60 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 3 2 2 82 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066374 117066585 ACCACATGAAGCTATAACTACC 58 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000058885 1 1 2 80 11 72181379 72182200 GTAGTTACCATGAATATGGCTGC 60 72179880 72179898 CTTCTTGCTGATTCACCGG 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 2 1 4 72 X 71961128 71961146 GTGTAGAGGAACTGCTTCG 58 71965794 71965812 TGTCTATCAAACTGCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 3 3 3 90 7 123134431 123134449 TCCTCACAGTGAAAGGTGG 59 123134503 123135293 CAAATTGTTGCCATGCCAG 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612 2 2 3 83 7 123125397 123125415 CCATCAACCATCCACTGTG 59 123125462 123129586 CTGGTTTATGTCCTTGGCC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802 2 1 4 180 17 72209468 72218772 GGATCCAAGTTCGAAACATGG 60 72219621 72225933 TTCTCATACAGAGCCAAGGAG 59 NA Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 2 2 2 80 4 155333365 155333386 GCTTGTACAAGACTGTACTCTG 59 155333427 155334229 CATGCGACGTAAACTGGTG 60 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 3 3 3 80 17 66580118 66580139 TCACTTGTCTCCTTATTTCCTC 58 66580178 66581982 TAAAGATGGATGTGGAACCTG 58 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 2 3 3 80 17 66447369 66447390 CACTTGTCTCCTTATTTCCTCC 59 66447428 66449233 GTAAAGATGGATGTGGAACCTG 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447 2 1 2 94 7 142147371 142147389 TATGTCTGTCAGGAGTCGT 57 142146930 142147316 GCATGGTACACATTTGAATCTC 58 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000080352 2 1 2 80 1 48539490 48539510 TGGGAGACATTTCTGATTCAC 58 48538787 48539448 GTTCATCTCCAAGCCACTG 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 2 2 2 80 14 91855031 91855051 GAAGAACATAAAGAGCGATGC 58 91855090 91858066 AGTTTCTTCCTTAATGACTGGG 58 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000080753 1 1 2 112 14 91845578 91850871 AGTCATACTGGTGAACGGC 60 91850947 91850965 CATTTGAAGGGCTTCTCGC 60 NA Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 3 1 1 65 13 36265316 36265334 AACTGGAAGGAGTTCAGCT 59 36258661 36258679 CATTGTGCTCAGCATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 1 1 1 64 1 255573151 255573169 TGCTGAGACTTCATGGTGG 60 255573027 255573048 CTTATGCTTGTTCTTCTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000089042 1 1 2 85 2 189337102 189337122 CCTTTATGCACATTCTGACCC 59 189335009 189337055 GAGGATATCCTGGCCATCC 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000067333 2 2 3 80 7 82058614 82058635 TTGCTCTCATCATTCTGAACTG 59 81992029 82058575 CATAACTAGCTCGCTTACTGC 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741 2 2 3 80 7 81976519 81976538 ATACCATGTCCAACCATTGC 59 81925877 81976477 CTTTGGTGTTCTCTTCCCTC 58 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000040188 3 1 3 80 3 146383979 146388989 GGATGTGAAGCATGTGCTG 60 146383917 146383937 GCGATGGTCTCTATTTCTCCA 60 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154 1 1 2 80 14 92414839 92414857 TGTAACAGAGCCTGTCACC 59 92378775 92414796 AGAGGCAGACTCAGTTTAGG 59 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000058548 1 1 2 93 17 63265506 63265524 CAAGGACAGCTCTCATCTG 58 63267338 63278531 CTTAGTTGTTGGGACCTGAG 58 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 2 2 2 80 16 21069202 21069221 TGCATTGATGAGGTGAATGG 59 21069264 21069694 TCCTTCTGTGTCCTTCTCG 59 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 1 2 2 100 4 117597682 117600453 CCAATGTGATTGTCGATCCA 58 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000079304,ENSRNOT00000046771 2 2 3 90 14 17555402 17555421 AATATCCCAAAGTCGACGTG 58 17555472 17555618 CTAGAATTTCGAGCTATGCCT 58 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 2 2 2 80 1 189171375 189173015 CAGTGTCAACCATCTTGCT 58 189171313 189171332 TCCTATATCCAGAACCCGAG 58 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292 3 1 2 115 7 141388618 141388636 CTACCCAGGAGGGATTAGC 59 141387760 141388541 CATCCTTAGACACATGCAGAG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 1 2 2 80 4 77277922 77278629 CAAACTACTGATTCAGGCGG 59 77278671 77278690 ACTTCACCAAGTAACTGCTG 58 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 2 2 2 80 4 77277923 77278629 AAACTACTGATTCAGGCGG 58 77278672 77278691 GACTTCACCAAGTAACTGCT 58 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809 2 1 3 80 1 247251526 247251544 TGTTCTTAAGGCAACAGCA 58 247251588 247251867 CGTCGCAAGATCTTTAGCT 58 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910 3 1 3 113 1 247291703 247291721 AGAAGGCTCTACAGTGGAG 58 247296037 247305648 AACTTTCTCCGAGAACCGT 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000022574 2 3 4 83 5 152683515 152685792 GACGCAAGTCTCATGAAGC 59 152685839 152685857 CAATGGCTTTCTGGAGCAC 60 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 2 2 2 80 15 109339952 109340899 TACCATGGTAATTTGGCTGTG 59 109339892 109339912 CTGCAAGGAGATCTCATAGTG 58 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373 3 1 2 85 6 111283582 111283600 CTCCCTCCAGGATAAGCTG 59 111283002 111283534 TCAGGAAGATCAGAACTGCA 59 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572 1 1 3 80 10 5240097 5260253 GACCATGGAGGCCATACTC 60 5240035 5240055 ATCACTGTTAAGGAGCTCCAG 60 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000085310 3 1 3 80 10 5240097 5253200 TACCTGCAAGGCCATACTC 59 5240035 5240055 ATCACTGTTAAGGAGCTCCAG 60 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000060311 1 1 2 82 3 94636352 94636375 TCGCTATCAGCATGTAGGC 60 94636288 94636306 TGCTTCTCCAACACTTCCT 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351 3 1 2 83 10 46992251 46992867 CAAACTGATGCTCACCCTC 59 46991219 46991238 GATGAACTCATACAGTCGCC 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000030352 1 1 2 80 4 22619752 22619772 CTTTGGATATGTCAACCTGGA 58 22619362 22619713 GAATTAGACCTGTAAACAACCC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000059545 3 1 3 80 7 27289977 27289997 AAGTCTCCAAGTACGTGATGG 60 27290037 27290143 TACCAACTGGGATGAGAACAC 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 2 2 2 80 7 123047239 123052960 TCCAGCACAGAATCATCCT 58 123053003 123053022 GTTCACATCAACCTCCACAC 59 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 2 2 2 80 9 10274694 10274712 CTCACAGCAACATGCACAG 60 10274754 10275245 GGGACACATCTATGTACTGCT 59 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 2 2 2 80 10 105319451 105320990 AGACTTGTCAAATGTGCTGAG 59 105319391 105319409 GAACTCGACGTTGTAGTGG 58 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 2 2 2 81 5 157751742 157751935 CAGGCAATAAGCCCTTCAC 59 157751679 157751697 CTTGAGAGCAGGTACAGCA 59 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000008471,ENSRNOT00000085097 3 2 3 80 7 42331547 42332266 TAGGTCCTGAGAAAGATTCCA 58 42332308 42332326 CATTCCTAAGGGAACTGGC 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928 3 2 3 92 13 48071614 48075035 CATCAACAAGCAAAGGAAGC 58 48071541 48071559 GAGTCAGTCAGAGAACTGC 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000001464 2 1 4 89 12 781531 781549 ATCCTCACGGATGGAAACC 60 781602 786747 TCCAACTCAGATTGCCTCC 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000064951 3 1 4 87 12 785901 785919 GAAGACAGTTGCTCACCAG 59 786067 786746 CCAACTCAGATTGATACAATGC 58 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015325 2 1 2 80 4 81238332 81239327 AGGACCTGGAGGAAATTATGG 59 81238272 81238292 ATTGGACCGTAGTTAGAAGGT 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282 3 1 2 112 17 69391756 69392418 GTGTCTGTCAACTAAATGGGT 58 69388582 69391683 GGCCTTCAAATATTCCACCA 58 NA Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 1 2 2 80 20 29045759 29045777 GCTTAATAAGGAGCGGGAG 58 29044038 29045715 TCAATCCGTACCTTCTCCA 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 3 2 4 80 2 182032104 182032122 GCAGGTCAGAAGAAAGTGG 59 182031600 182032061 ACATAGCACTCCCATGTCTC 59 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546 3 1 2 80 1 256664564 256664584 AAATGATGTAGTTGGGACGAC 59 256660619 256664523 TCTCCTGTATTTGCTTCCAC 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000088892 1 1 7 80 1 102915703 102929766 AAACAATCCCGATAAGGAACAG 59 102930384 102930403 CCCTTCAGGTTAAGGACCTC 60 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000020705 3 1 3 80 9 90891938 90907023 TCAGAAACGATTCCATGTATGG 59 90907062 90907082 CATCTACCACAGACATGTCCT 59 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005 2 1 2 80 13 101039155 101039175 ATGGACCATAACCATGTAGGG 59 101039216 101039769 GTTGTTGAGGGTGAAACCTG 59 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 2 2 2 80 14 21052110 21052130 GTGCACTTTGATACCCATGAG 59 21052167 21052715 CAGCTCAATATACCTATGTTGGAC 59 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000080600 1 1 2 86 2 251024408 251026063 CTAGAGAAGATGAGAGGCCAG 59 251026111 251026129 GAGTCTCTGTTCGGCTGAG 60 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873 1 1 2 85 1 143661628 143679883 CGATCAAATTCCTGGACCA 58 143679932 143679950 TTTCTTCTGACAAGGACCC 57 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 3 2 2 85 3 3791477 3792895 CAAATACCAGTCCTCCAGGA 59 3792943 3792961 AATCCTCATCAGGCATGGT 59 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000080686 3 1 2 109 5 171458882 171458900 TTCATCAGCCTTCAGTGTC 58 171457333 171458809 GCTTTCCAATTGTTGAGCG 58 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509 2 2 3 80 6 122735705 122735723 ACACAATTCGATTCACCGT 58 122738900 122739817 ACTTTAGACTAGAGGGCTCAG 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000046884 3 1 2 80 10 14527320 14527338 TGCAGCTTCTGAAAGAGGA 59 14527380 14527533 TCATTTGCTTCTGAAACGTGG 60 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543 3 1 2 80 4 78776367 78776388 GTTTGTTGGAGCCATTATAGGA 59 78770613 78776328 TGGACATCGATCTTAGACTGG 59 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 1 2 2 80 20 13114818 13114979 GAAGATGATTGTCGAGGTCAG 59 13115020 13115039 GCTTCTTTGGACTTGAGCAG 60 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450 1 1 2 134 2 198439030 198457795 TGGACATGTTCCAGTTGGT 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000028780 2 1 2 135 2 198439030 198439416 TACTTTGGGTTCCAGTTGGT 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 3 1 2 69 15 28018056 28018074 AACAAAGCCGTCATCTCCA 60 28034122 28034140 TTGGGTCCTCTGTATGTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 2 2 2 80 2 198704295 198704313 ACCACCATTATCCTTCCCA 58 198704127 198704255 CTCTAGAGTCTCTAGTTTCTGGA 58 NA Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 3 2 2 80 2 198704290 198704310 ACCATTATCCTTCCCAAGAGG 59 198704124 198704254 CTTCTCTAGAGTCTCTAGTTTCTGG 60 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 3 2 2 80 8 14115815 14117150 CAAAGCAACAGATCTCAGACAG 60 14115756 14115776 CTAAGTCTCCCATCATTCCCT 59 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382 2 2 3 80 5 159090017 159090035 ATCCATCCACCCATCATCC 59 159089340 159089363 TCTTAGTCCTGACGTACTCC 58 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000041994 1 1 4 83 16 23553675 23555932 GCTGTTGTTATGGCTATTGCT 59 23555977 23555995 CCAGAATTTCAGTGCTCCC 59 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629 1 1 4 80 16 23448652 23487944 CGGATGCTAGTGATCATGG 58 23487986 23488006 CTTCCATGGTCCCATATTCTG 58 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000003494 1 1 2 87 X 71474776 71474794 AAAGAAGCAGCTCTGGAGG 60 71474845 71478295 AATCAGGAGGCTTAGCCTG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 1 2 6 118 20 3300786 3301071 ACAGTTAAGGACCACCCAG 59 3305191 3305209 TGGTGGAATCATTGGTCCC 60 NA InUTR Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 2 2 2 80 10 110161504 110162245 CTATCCTTCTGAATTTGCCAC 57 110161444 110161463 CTCAGGTAGGAGTAGTCAGG 58 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721 2 1 2 98 19 43163611 43163629 GTCTCTTGCTTCTGCTCCT 59 43163688 43164044 AGATGATATCTTGCACAATGGG 59 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000067665 3 1 2 85 10 84988059 84988078 CAGAAGACATCATGCCTGAG 59 84988126 84989279 CTTGGTGATCTTGTGCCAG 59 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000085897 3 2 3 90 15 28311305 28311634 CCAGGGACAGACTCATTCTG 60 28311234 28311253 GAATATCGCTGGACGTTTGG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 1 4 10 80 9 95234837 95298732 CACTTTCCAAGGAATTTGAAGC 59 95298772 95298791 AGACCATGGATCCCAAAGAG 59 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 1 2 2 84 6 126682423 126683876 TGACTACCTACAGGCAAGC 59 126682357 126682380 GTCTGCTATTCTCTTCATCAACTG 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 5 6 94 20 3563785 3563803 GAGTTCTCCCGAAGCTACC 60 3563860 3565217 TTACCCGAAATCACCTCCTG 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 3 5 6 95 20 3563785 3563803 GAGTTCTCCCGAAGCTACC 60 3563861 3565218 GTTACCCGAAATCACCTCCT 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 3 3 3 80 X 128446881 128446899 GCAGATCTTGTGAGTGCTC 59 128446940 128452172 TTCAGTACTGATGTCTTTCTGC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 1 3 4 80 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230014 124230032 TTAGGGTGACACCATCAGC 59 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000065187 1 1 2 81 1 199198892 199198915 GGTGTTATCAATTCAGAGATACCC 59 199198954 199199763 CTCCTTTCACCTTGCTTGTC 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000036483 3 2 4 121 13 79740182 79744861 TACTGGCAAAGAAGACCCG 60 79738393 79738414 GATCTGCAGGCTTTATTGTCTC 60 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 2 2 4 120 13 79740183 79744859 CTGGCAAAGAAGTAGACCC 58 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000036483 2 1 4 80 13 79784540 79784563 ACAGCGAAGTCTACCTGTG 60 79784478 79784498 TCACTGCCTACAACTACACTG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000082793 1 1 8 80 6 64790206 64794466 CTCTTGATCTGGTACAGCCT 59 64794507 64794527 TTACAATATTCTCCCGTGGGT 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 1 2 8 80 6 64838566 64838586 TCTATGCACAAACATCAGTGG 59 64838627 64839960 GAAGAATACCAGCTTCGTCC 59 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 2 2 2 100 18 35780441 35780459 TATGAGGAGCGCATCACAG 60 35762724 35780379 GAGTACTCATCTTCCTCCCTG 59 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000071324 2 1 3 100 12 20951191 20955435 CAATGGAACAGGCAAGAGG 59 20944754 20944772 AAGCCAGAAATGTCACAGC 59 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000071324 3 1 3 101 12 20951191 20955435 CAATGGAACAGGCAAGAGG 59 20944753 20944772 AAAGCCAGAAATGTCACAGC 60 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000020608 2 2 3 83 14 21103510 21114285 GACCCAGAAGATCCTAATTATCTC 58 21103450 21103468 AATCAAGCCCTTGATGCTC 58 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000081547 2 1 2 82 19 562362 562382 GTTTACAAGGTGGCTGCTG 60 562427 562447 TCAGGTCCGTCTTCTATACCA 60 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000067070 3 1 2 94 1 15475039 15488396 TTCAGTCCCTGAAGGTGTG 59 15488454 15488472 CATGAAGCTGCTGTCACAG 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000054812 2 1 4 81 1 226783344 226783398 CCTTGGACAGTCTGGAAGG 60 226779511 226779529 CTCCACTAGACCCTGACAC 59 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 1 1 1 60 4 49372182 49372202 CCATGAATCTACACAACAACG 58 49378959 49378978 TCCACAGACATTAACTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000018153 1 1 2 163 1 92091148 92091276 CAAAGTGGCAGAGTTCTGG 59 92091003 92091021 AGTTTCTCAAGTTCGCTGG 58 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000047737 2 1 4 80 16 6156343 6156361 CTGGAACACGTTTGACTCC 59 6150107 6156299 TCACTGTCAGATGGGTCAG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 3 2 4 73 13 80440890 80440909 CAAATACATCAAGCCCAAGG 57 80439235 80439253 CATAGAGTTGCTCGCTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000 3 1 2 80 12 47953040 47953058 GTCAAGAGTCATCGTCTGG 58 47949622 47952995 ACAAACTGCAATACAAGCTC 57 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445 1 1 2 90 10 27096954 27096972 GGAGTATGGTACCCTGCAC 60 27094720 27096901 AAACATCCGAAGAAGAGGGT 59 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445 3 1 2 92 10 27096956 27096974 GTGGAGTATGGTACCCTGC 60 27094720 27096901 AAACATCCGAAGAAGAGGGT 59 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000061303 3 1 5 81 3 2267460 2268299 CTCCCGAGACACTAATCTCC 59 2268343 2268361 ATGATGGATGGGTCGTCTC 59 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 2 3 3 80 6 127611483 127612376 CAAACAAGGTCAGCCATTCTC 60 127611423 127611441 CAGTGAGCTCAGGAGTGTC 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 3 3 6 98 20 3430210 3430228 GAGCAAATGGCCAAGAAGG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 3 2 4 80 1 102824433 102824454 GGAGAAAGAAATCCATCAACCT 59 102824087 102824392 AACTTGGTCACTGCTTCTG 58 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 1 2 2 80 8 104152436 104152455 TGAAGTAGCTGATGAACTGG 57 104152496 104154705 TTCTTCTGATCATAAGCCGAG 58 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000074991 2 1 2 80 19 118968 118989 GTTTAAGCTTGACTATGCACTC 58 118786 118928 GGAGTGTAACCTTCTTGGTC 58 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000089715 1 1 2 100 1 78755917 78755935 GGAATTCTTGCTGACCTCC 58 78755998 78756364 ATGAAGACGTCTTCATGAGG 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 1 3 3 179 14 28430099 28448338 AAGTCATGGGTTATAGGTGCA 59 28422443 28429961 TTTCCGTACCTTCTTCTGTAGG 60 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000025764 2 1 2 94 3 3854951 3854972 CTTACAGGAGATACCTAAGCCC 60 3854874 3854895 AAGGAGGTGCTGATTCCAG 59 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163 1 1 2 80 15 3974338 3974360 GAGCCTATTGAACAAGAAGTCAG 60 3981769 3985015 GTTTGTGGCTCCATTAGGTG 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000079836 1 1 2 80 12 12761977 12761995 CAAGAACTGGTGGAAGGTG 58 12756944 12761938 CTTACTCTCAGAATACACCTTCAG 59 NA Rattus norvegicus 81 Snx22 ENSRNOG00000022852 ENSRNOT00000091751,ENSRNOT00000031207 1 2 2 82 8 71727708 71728098 ACAAGCGGATCAAGAAACG 59 71727644 71727662 CTGTTCCAGTCCTCTGGTC 59 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786 3 1 3 80 13 103239791 103239809 AATCCAACGTCTTCACGGA 59 103239087 103239750 TGTTTCTAAGCTTGCTGATGTC 59 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000063977 2 1 2 80 19 38925004 38925024 GAACTTGGAGCATGAAGACTC 59 38925063 38925089 AAGTGAACACAATCTTTGGTCC 60 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000088679 3 1 5 88 9 81657354 81657372 TTTCCTCATGAGCATCGCT 60 81657422 81657690 CCCAGAGCAGTTTGAATTCAG 60 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 1 2 3 81 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179843 143179862 CATGAGAACAAGCCTGAAGC 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080158,ENSRNOT00000080419 3 2 12 103 20 3358361 3358379 TGTGGTCGATCCTATACCC 58 3360455 3360679 CCTTCAGGAATTCTCTGTCAC 59 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196 1 1 3 80 2 62193111 62193132 AGACAGTTTGTCTGAACATGAG 59 62193171 62194511 TTCAGAGCTCTGTCTTTACCT 59 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000080241 2 1 3 80 2 62193176 62194515 AAGACAGGTCTCTGAAAGGG 59 62194556 62194576 GGTTGACATTTCTGTCTCCTC 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316 3 1 3 80 11 84399531 84425174 GGAAGATCATTGGAATGCCA 58 84425216 84425235 AGAATGCACAGAGATGTCCA 59 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 2 1 1 69 20 14618775 14618795 CTTTATGAGGACAACCAGACG 59 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 2 1 1 100 7 74327028 74327046 GAAACCCAAACCTGTAGGA 57 74326943 74326961 CCATATGACGAATGGACGC 59 NA DesignNoJunction Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 2 2 2 80 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141007 11142014 AGGATAAAGCCCTTGTGAGG 60 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 3 3 3 122 12 22753562 22753580 ATGACGACATCCGTAGAGG 59 22751133 22751549 TTTCATATTCCTTGAGCCGG 58 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000005213 3 1 3 88 13 85392394 85392611 TTCTGCTTGCCAAAGTTGG 59 85377172 85377190 ATATGCTGCACGATGAGGT 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000091242 1 1 2 84 10 37048175 37048195 AGCTGGATGACATTCTAACAG 58 37049124 37051307 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 3 2 2 148 10 37039447 37039557 AATCTGGATGGCCAGAAGG 60 37039668 37041547 AAGAAGGCTGCAATCTTCCT 60 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 1 2 2 80 7 126661149 126667203 GTCATCACAGACACCCTCTC 60 126667245 126667264 GGACTCATCTGTACTGGTGG 60 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000012137 3 1 3 112 4 147333202 147351550 GAGCACTTCACAAGAAATTACC 58 147351623 147351641 CAAAGGAATGGGAGTGGTC 58 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 3 2 3 86 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086531 GAGATACAACCTGCCAAATGTC 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000041473 1 1 4 80 7 51425413 51431824 ACACAGAGCAGGTCATACC 59 51425351 51425372 TCTTGCTTGTCTAGATCTTGCT 60 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709 1 1 2 93 13 113710385 113711082 AGAAAGGCTGGGTGAAGAC 60 113711139 113711157 CTTTCCCTGAGTCTCAGGG 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 1 2 2 80 6 128666628 128668305 AGAGCAAACTTCAGAGCCT 59 128666566 128666584 GGTCTAGGAGCTTCCTGTG 59 NA Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 3 2 2 81 1 90512427 90517107 CTGACTCCAGAATAAGCCGT 60 90512365 90512386 CGGTCGATGAAATAATGTTGCT 60 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016 2 1 2 81 1 273743351 273750851 GTGGAAACAGACCACAGGA 60 273743288 273743306 ACTCCGAGTTCCTCATAGC 59 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 2 3 3 80 14 34748936 34756738 CTTCATAATAGAAGGTGCCCA 58 34756780 34756798 AAGAACATGGCGATCACTG 58 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 2 2 2 80 20 28046425 28047181 TGGTTCAGAAATTGCCTGTC 59 28047221 28047242 CACTGTAGTCTTCAAGTTCCTG 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000081051 1 1 2 144 5 133762246 133762266 GTAGGAGTGATGACAACAGAG 58 133761559 133761807 CCAATCTTTCCTTCATCAACAG 58 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 1 2 2 80 3 2644808 2644930 TGGATGAATTGTATTGGGTGC 59 2644970 2644990 TACCATGAGTGTTGTACCTCC 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000055983 3 1 2 87 2 208399393 208400116 CACCATCAGAACAATCTCCAC 59 208398766 208398784 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017413 2 2 3 87 19 9770401 9770419 GTGGTCTTCCTCAGGTGAC 60 9768968 9770218 TTCAAGTGTGCAATGTAGCC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199 2 1 2 179 1 100231452 100233897 GGACATACATGGTGTTCCGA 60 100231214 100231232 TCAGGAAGGCCTTGTAACG 60 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000026146 1 1 2 81 1 198099984 198100002 GGTGCTGGCTCTATATCCC 59 198100047 198100299 GTAGTCATCCTGAGGCCTC 59 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000041140 1 1 2 82 10 71547070 71560739 GATGATGGACTGAAGGCAG 58 71560785 71560803 CTGATTCCCTTCCCTCCTC 59 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000002557 1 1 2 86 11 87418313 87424007 GTTCTGATTGGTATCCAAGTAAGC 60 87418250 87418271 GTGCTTTATACAGAGTCCTGGA 60 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 2 2 2 80 4 85125048 85127604 ACAGAGATTTGCCTCAATGGA 60 85124988 85125008 GAAACAGATGATCCGCTTCTC 59 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000029046 2 1 2 80 X 70377001 70377463 CATTACCACTGTTGTTGGAGAG 59 70377504 70377522 TCAAAGTACTTTGCCACGG 58 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 2 2 2 80 19 44064410 44065805 TCACAAGTTAAGGTAGCAGAG 58 44064350 44064370 AGGTTTCTCTAGTTCATCTGC 58 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 2 2 2 80 7 66881596 66881616 CATGACCTGAAGGTTCATGAC 59 66863057 66881556 GAGATCGTAGACTCTGACCTC 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550 2 1 3 90 5 159960634 159960652 GTACTTCCTGGTGGCTCTC 60 159960133 159960581 CCACTTATGTGCTCTGACCA 60 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 1 2 2 80 1 89321901 89322045 CTCACGGTGCTCTATCCTC 59 89321839 89321857 CAGCTCTACTGACTGTCCC 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 2 4 4 80 10 18571047 18571819 AAGTTCGAGGACTTTGTGAC 58 18570986 18571006 CAAATTAAACGTCCACCTCAG 58 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 3 2 2 80 1 78460733 78470359 AGCTCACAAGATCAACGAC 58 78460671 78460689 TCATGGTTCTCCTTAGGGA 57 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784 2 1 2 80 20 20644279 20650227 TTGGTTCCACTTGTAGAACAG 58 20644219 20644239 TACTTCACCATCAATGCTCAC 59 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000084760 3 1 2 80 1 281828655 281828674 TCAACACCATTTCAGGTCAC 59 281825476 281828612 CTGAACCCATTCTGGTCTG 58 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000086250 1 1 2 80 20 21937102 21941627 CTTTGATCTCAGCCACTGGA 60 21937041 21937059 AACAAAGGTGGTTTCCGTG 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 3 2 2 80 14 83092688 83092708 AGATAAATATTCTGCCTCCGC 58 83092508 83092647 AGAAACACTGTTCCTGTGAC 58 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 3 2 2 81 2 259382705 259382723 TTTATCCTGGCCATGGACG 60 259381631 259382661 TATACCCTTCTGTCGTGCAG 59 NA Rattus norvegicus 81 Rps6kc1 ENSRNOG00000003767 ENSRNOT00000067017 3 1 2 80 13 109442304 109442324 GAAGATGACTATGAAGCAGCT 58 109403590 109442263 ACTTAGTGCTCCTTGTACAC 57 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 1 2 2 101 4 162281656 162281674 CCTTGAGGCAGAGTAGCAG 60 162281737 162397232 CTTGGAGCATTTCACTGTGAG 60 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000060871 3 1 3 82 13 49353556 49354821 GAGTACATCGACAGCAACC 58 49353492 49353510 GGAAAGAGGTCTGTCAGCT 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 1 2 2 80 5 124021425 124143314 GAAGAAAGGTCAGGATCGC 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530 2 1 2 81 12 22965194 22965673 GAGAAGACTCACAGGTCCC 59 22967755 22967773 GTCACCTTTGGAACCTGGA 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431 2 1 4 133 1 81144003 81144021 ATGGTGACCTTTAGGGACG 59 81124967 81143908 AGTTGATACTCCACTGAGAGC 59 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529 1 1 2 80 6 135229071 135229174 GTGAACAAGAAGACAGACACTC 59 135229012 135229030 CCCTTTCCTGTTGATCGTG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021226 1 1 5 82 1 259479449 259481603 TACTCCCTCCAGACATGGA 59 259479385 259479403 CTCCCTGTAGGAAGACGAG 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777 3 1 2 80 3 45086603 45088865 CATCATTTGGTAGAACACGAGAG 60 45086545 45086569 CCAGTTGTCTATCAGAATTCTTCTC 59 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296 3 1 2 88 16 7068515 7068533 CAAGTATCGAGACACGCTG 59 7068585 7070212 CTGGTGTGATACCTGGAGG 59 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000087107 1 1 2 158 9 15122958 15123294 TCCTCAGTACAGTCACCAG 58 15123416 15123434 TAGGACATGTCCTCTCCTG 58 NA Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 3 2 2 81 10 88264444 88264788 CTGGAAGAGAAAGAACGGG 58 88264381 88264402 CCTCCATCAGAACACTATTCTG 58 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 1 3 3 80 18 70623818 70632435 ATGAGGAGTGTAAGGTCCC 58 70632479 70632497 AGTGTTGACTGTTGGAGTG 58 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600 3 1 2 91 1 81699326 81699585 ACTTGACAATCCGGAAAGC 59 81699640 81700299 ACTTCTTGCTCTTTCTGCG 59 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000056439 1 1 3 80 9 111248315 111248334 GCAACTTCTTTATGGAGCTG 57 111248379 111248402 CTAGCACAGTCCTTGACTC 57 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055 1 1 2 80 13 47962104 47992973 CCAACCTTCAACAAGAATGTC 58 47962044 47962064 AATCTTCTGCTTGATCTCCTG 58 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 3 2 3 86 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638481 TACAATCATTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 2 2 2 80 18 2064994 2065012 GGTTATACTGCCTTGCACC 59 2065056 2065464 GTTTGCATTTCCCTGATGC 58 NA Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 3 2 2 80 6 93582324 93582347 CTGAATCATCAGACATAACCTCAC 59 93582384 93584129 GTAGAGTTTCAGTGCTGTCTC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 3 5 7 80 15 34644701 34691910 CTACTGGTAAGGGAGACTCAG 59 34644641 34644662 CAGTACACAAGCGATAACTGAC 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 2 3 3 80 18 73272157 73272176 AGACATTCTTTCTGGAAGCA 57 73272219 73274059 CATCCCTGCAATCATCTCC 58 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000029634 1 1 3 80 8 13871595 13871707 GAGAAGCTATCTACAAGTTCATCC 59 13871424 13871443 GCTCCTGTTTCTCTTTGCTG 60 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 1 2 3 80 10 35872971 35872989 GGCTTTGTACGGCTTAGAG 58 35873033 35874540 CACGATTTCCAACCCTGAG 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789 2 1 2 96 3 8962201 8962219 CAAATAACGCCAGGTTCCT 58 8962278 8962926 AGGTAGACCCTGCTATAGGA 59 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 1 2 2 80 1 32328464 32329759 TGCTTCCTCCTGTATGTGG 59 32328402 32328421 CCAGTCTGGGAAGATGTAGG 59 NA Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 3 2 2 81 8 117592546 117592564 CCTTGGAGCATGAAGTGTC 59 117592606 117598489 AGATGAATTTGTACTGGTTCCG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000077808 1 1 4 140 5 127613023 127614091 ACTATCAGGGATCGCTTCC 59 127614965 127614983 CACTGGCTTGGTTTCACAG 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 1 2 2 80 6 42274335 42274444 AGATACCCAAGAACAACTGTC 58 42274486 42274504 AGCTGCTTCTCAAACTGTG 58 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321 2 1 2 80 3 149200750 149200769 TGGATGTTTGAGAATGTGGT 58 149200812 149203925 CATCACTGGGTTACACTCC 58 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 3 2 2 80 4 153929494 153930269 TGGAACACAGAACATTGCG 59 153930312 153930331 TGGTGAGGTGAAGTTCTCAG 59 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 1 2 3 129 18 15463871 15480352 GCCAACACATACCTCTTTATGG 60 15480441 15494599 CTTCGGGATAATCTGTCCCA 59 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 1 1 1 62 1 276011869 276011887 TCCGAGATAAATCCCGGGA 60 276011595 276011614 TAAAGAGCCCTCCATCTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 1 2 2 85 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108085 25108104 GTTGGCTACTTGATTGAGGG 59 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000049380 3 1 2 80 1 189264245 189264264 CATTGGGAAGGAACTTCCTC 58 189264307 189264563 GCCTTTACCACAATGGCTC 59 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 3 1 1 73 7 12420952 12420971 GAAAGTTTGACTGAGACCCA 58 12418967 12418985 TATTTCCGGAAGCCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 1 1 1 60 18 75203861 75203879 GAGTCCTCGATGACTCCAG 59 75127337 75127355 GTACTGTCGTCTGGTCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 3 2 3 91 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146089 115146108 CAGTAGGAACATGAGGAGCA 59 NA InUTR Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000085582,ENSRNOT00000004295 2 3 6 80 10 53721427 53749673 CTCATCGAGAAGCCAATGG 58 53749717 53749735 CTTGAAGGAGGTGTCTGTC 58 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 1 2 2 84 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128196 AGCAAATGATCTCCTGGGT 59 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 2 2 2 85 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128197 GAGCAAATGATCTCCTGGGT 60 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 2 2 2 119 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044061 51044079 CACACTCAGGTTGTTCCAG 58 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 3 2 2 80 5 126671247 126671266 TGTCCGGTTTACACTACCTG 60 126671306 126674104 TCATCTACTACACCTCGTAGGA 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000012201 2 1 2 87 5 126670829 126671167 ACAATAAAGACCTTGAGGGCT 60 126671216 126671234 CTGGTGACCTTCTCCATGG 60 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 2 2 2 80 1 112890219 112890237 GTGTCCAATGCAGCTTGAG 60 112863386 112890179 GAATTAGGGTAAGCATAACTGCC 60 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600 2 1 2 81 4 9203447 9203466 TTCTGAGAACAGAACAGCAC 58 9203506 9215579 GGAGGTAATCTTTAAACTGACCC 59 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900 2 1 2 82 9 116058679 116061762 GAGGAAATATAGGACAACACTGC 59 116058619 116058637 GACCCATTCTGCATGAGGA 60 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000030470 3 1 2 80 6 101612850 101612868 AGACAGTGGTGTAGCTTCG 60 101612911 101636739 GAGTCTGGAATCTTTGCAGC 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302 2 1 3 80 1 189974768 189975002 TCTAGAAGTTGGTTCTCTACCTC 59 189975854 189975874 ATCATACATACGACCAAAGCG 59 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 3 2 3 82 4 163419650 163419670 CTGGATTCTTTCGAAAGAGCA 59 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291 3 1 2 83 8 49300850 49306235 CCAGGAAGAGTATGAAGTCTC 57 49300787 49300806 TCCCACTTTAAGTTGTCCTC 57 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258 2 1 2 80 7 59928765 59930704 AACAGCAGGATGTTGATCAG 58 59928704 59928723 TGAAATATCCCAGCTTTGCC 59 NA Rattus norvegicus 81 RGD1564770 ENSRNOG00000057254 ENSRNOT00000088759 3 1 1 62 4 163095330 163095348 CACCACCGGTTAACATTCG 59 163094809 163094828 AACACCAATTACCAGGATCC 58 NA DesignNoJunction Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 3 2 2 81 11 82647442 82649228 ACATCATAGTTCTCAGAGAACG 58 82647382 82647402 TGTTCTGACTCCATGATTCTG 58 NA Rattus norvegicus 81 Rgs14 ENSRNOG00000015616 ENSRNOT00000090536,ENSRNOT00000021596 1 2 2 80 17 9779649 9779670 AGTGGATTTGGAGAATCTAGTG 58 9779482 9779608 TCCCTTGTCTTTGCATCTG 58 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 2 3 3 131 6 34029246 34053191 GGTGGTCAACCTATTGATGG 58 34053283 34056189 CAGGCATTATCAGCCATTCTC 59 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000091651 2 1 3 80 6 34030884 34053177 TCAACACAACCAAGGTGGT 60 34053221 34053239 CAGCTGGCATGGAATTTGG 60 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000091651 3 1 3 82 6 34030882 34053176 ATTCAACACAACCAAGGTGG 59 34053221 34053239 CAGCTGGCATGGAATTTGG 60 NA Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 2 2 2 80 6 102013316 102013336 AACCAGCATAGATTCTGTACG 58 102013378 102014733 GTCTTCAAGGACTGTGCTC 58 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 1 1 1 60 4 163122240 163122262 GAAGGTTAAGAACAAGGATGAGC 60 163126765 163126789 CCAATAATTGTATAGCTCCTTGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487 3 1 2 84 1 123914240 123959929 CTATAACAGTGCTGATGAGCG 59 123914176 123914194 AGGGAGATACTGGCAATGC 60 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850 3 1 2 83 1 8878088 8878108 AGTTTAAGAGCATACAGCACC 59 8860021 8878045 ATAAACGACAGTAGTAGGCCA 59 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000002006 3 1 2 80 12 29057181 29070399 ATCCCAAAGCCTGATGAGG 60 29070442 29070461 ATTGAAGAGCTCCTTCACCT 59 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 3 2 2 83 1 199019940 199026205 GACATCATTGGCAGAGGAG 58 199026250 199026270 CATGATCTTCACTGCAAACTC 58 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334 3 1 2 84 12 36970819 36981000 CAAGAGTCAGCAGCAACAG 59 36981048 36981066 CTTCTCCTCCTTCTCCTCC 58 NA Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 2 2 2 80 10 55434297 55434319 GGCTGAACAAAGAAATAGAGACC 60 55431654 55434260 TCTAGTTTCTCCTTTAACGCCT 59 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885 1 1 2 80 16 39901558 39903837 GAGAAAGTTAATGCAGAGGAGAG 59 39903875 39903895 CCAGTGGCTATACAGTATGGA 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000071522 2 1 2 84 7 117678056 117678152 ATCACAGTGACCATGGCTC 60 117677902 117677923 TCTTCAGATAGCCCATACACAG 60 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 1 2 2 117 7 142459199 142459217 CATGGACCTCTGCTTCTCC 60 142459298 142461325 CATCTTCTCAGCCTCCTCC 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230 1 1 2 80 6 132510958 132551404 TTGAAGAATTCAGCGAACAGAG 59 132551442 132551463 GTACCCATTTCTTACTGGTGTC 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230 3 1 2 80 6 132510963 132551410 GAATTCAGCGAACAGAGTATCTG 60 132551446 132551468 GATTGGTACCCATTTCTTACTGG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704 3 1 8 81 1 226463364 226480827 GAAAGCCATCAAGTTGCCT 59 226480872 226480890 GTCAGACTCATCATGTGGC 58 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036283 2 1 8 80 1 226468245 226475590 CAACTTGTCCAAGGAAGGC 59 226475632 226475652 GGGATATTGGCAAAGTCATCC 59 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339 3 1 2 97 10 104540029 104540132 AGAAGAAAGACTGCCTCCC 59 104540195 104540213 GTATTTCCAGCAGAGCAGC 59 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054 1 1 2 101 18 24743886 24744529 CACTACAACCAGCTCTTTGG 59 24744593 24744611 AGAAAGCAAGGGAGGAAGG 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000087621 1 1 2 80 X 29476586 29476605 AATGAAGCAGAGGATTTGGA 57 29476646 29481423 GTTTAAGTCTGCTTTGTGCTC 58 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 3 2 2 80 10 88699366 88699463 ACTTCAGAAACATGTCCCTG 58 88699305 88699324 TTGTGAACTTCTCTTCCGTG 58 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000086835 2 1 3 80 2 200760290 200760311 GACCATCCTAGATGTCAATCTG 58 200757648 200757668 CAGTAGATGAAGGCCACAC 58 NA Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 3 2 2 80 1 64020995 64021232 GTTGATTGGAGAGTATGGGC 59 64020934 64020952 GCAGCCTTACGAATCTTCG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 1 2 3 81 5 167992672 167992690 CGAAGTAGGCTTTGGATGC 59 167988716 167992628 TGAGTAGCTGTAGTGACTGC 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450 2 1 2 84 10 107319234 107319257 TTCAGTGCTTGACTTACACG 59 107314303 107314321 CAGAAGCTTCCTTGGTGAC 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571 3 1 2 83 5 134484618 134484636 AAGGGAGAGCATGGAAGAG 59 134477692 134477728 GGTAAGACAAACCTGCCTG 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954 2 1 3 82 6 99985696 99986387 AAGGAAATTCCGTGCACTG 59 99985632 99985651 TGTAGAGGCTGTTGTCTGAG 59 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 2 3 3 80 3 118152230 118175175 GAAGAGTGAACATAATAGGTGAGC 59 118175214 118175232 TTAGCATGTCCTGCTCCAC 60 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000077770 3 1 2 80 6 135680858 135680876 CACGTCTGACATGCTTCAG 59 135680919 135690463 GGGAGGAGAAATTCTGAGGT 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000091697 3 1 5 99 3 8594947 8594965 GAGAATGACAAGCTACGCC 59 8595378 8596387 GATATGCTATGCCGTCGAG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071741 3 1 3 84 1 217565365 217566577 AGTGGATAAAGCCTCAGTCC 59 217573349 217573367 GTTCTCTGCAGTCCTGGAG 60 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713 3 1 2 104 9 15695793 15695811 CTCCATCTGCCTGAAGGAG 60 15694252 15695726 TCTCCTTCCTCCTGTTTGAG 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000048752 2 1 2 102 18 27414126 27419086 AGAACAAGGGTATCAGTTAGC 58 27413092 27413111 GCTCAGAATACTGAGAAGCA 58 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404 3 1 2 82 3 123597650 123597671 TACTCCCTGATACTCATCTGGA 59 123597500 123597607 CTGGCACACCATTCTAGGT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000079571 3 1 3 92 4 27593757 27593777 GTTGTCATTGCAAGAGTCTGG 60 27593831 27594158 TCTGTGGTTGCTATGGCTC 60 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000091560,ENSRNOT00000088795 2 2 3 81 6 103379893 103380869 ACTTTGACCGGGATCACTC 59 103379830 103379851 TTGCCAATATCATAACCCAAGC 60 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 1 2 2 80 1 57726557 57727339 GCCTTACAACACTTAATCCGT 59 57727378 57727399 ATTGCCTCTTTCTCTTAGACGA 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 1 2 2 105 19 10131817 10211830 CACCAAAGATGATTTCAACGAG 58 10131507 10131525 CTTGTGACAGAGCTTCTGG 58 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 2 2 2 80 16 48341956 48342372 AGTGGATTCAGGAACGAGG 59 48341894 48341914 TCCAGAAGATGTCAGTCATCC 59 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423 3 1 2 81 7 130252448 130252467 CTTCACTCCTCAAGTGAGGA 59 130252511 130252897 GGTACTCAGAGAAGGCCTG 59 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584 2 3 5 81 10 56194529 56194547 AAGGCAACTATGGCTTCCA 59 56194590 56195296 TTGAGGGAAATTGAGTACGTG 58 NA Rattus norvegicus 81 Tjp1 ENSRNOG00000011077 ENSRNOT00000014988,ENSRNOT00000087332 2 2 2 80 1 126178006 126180607 ATGGGATTCTTAGGCCCAG 59 126177944 126177962 CATTTCCACCAGCTAGTCG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524 1 1 3 80 19 62066519 62066540 ATCTCCAAATGGAGAACTTCAC 59 62064496 62064535 TTCAGTTGTTCTTTCAGGGC 59 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 3 2 2 82 8 82272010 82272935 CACTACTAACAAGGAGCACG 58 82272980 82272998 CAATGGCACATCCTGATGG 59 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 3 2 2 80 18 27097240 27097258 TCATTGAAAGTGGAGGTGG 57 27097300 27098770 CTCTTAGGATTTGTCTGTGGT 58 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000079501,ENSRNOT00000045647 3 2 2 64 7 130542279 130542298 CAAGGATAACACCACGTGTG 59 130543233 130543251 TACCTGCTTGTGGGTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787,ENSRNOT00000077749 2 2 2 81 9 17123211 17123675 GAATATCGGAACCCAGGAGAG 60 17123718 17123736 GGTTCCTGGTACACCTGAC 60 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787 2 1 2 81 9 17122855 17123098 TTCTGTTAGCTGAGGTGCC 60 17123143 17123161 AGGATCTCATCCTGGACGA 60 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000079719 3 1 3 104 6 51297219 51316870 CAGTGCTGACTGTATGTGC 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000082985 2 1 3 109 6 51297219 51297710 GAGGACTACACTTATCTTATGTGC 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 2 2 2 84 8 76426398 76427600 CTCATACAGTCTCAACAGATCAC 59 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 1 3 3 80 5 134206571 134206591 GACTATGTGAAGGTGGTTCTG 59 134205115 134205840 GAGCAAACCATAACCAATCCA 59 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000039059,ENSRNOT00000080623 3 2 2 80 6 135774212 135774597 GAAGAATTGCACAAGCAATTGG 60 135774153 135774173 CTGCTGATGAGCATCTTTGAG 60 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000078117 3 1 2 95 8 13248032 13250742 CATTTCACAGCCACATGAG 57 13247955 13247973 AAATCGACGAAGTCCTGTC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000082455 2 1 18 102 1 43454955 43475251 TTACCTCAGTGCATGGAGAC 60 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000075728 3 2 3 91 2 235708723 235709242 AGAAAGGAGAACAGGGATTCC 60 235709295 235709313 CAATTGGCAAGGAGCATCC 60 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463,ENSRNOT00000075728 1 2 3 84 2 235645099 235645117 CTGGAGAATCTGGTCGTCC 60 235650125 235660902 CCTGGTTCTCCCTTTATCCC 60 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815 1 1 2 89 9 16754372 16754634 GAAACTGGATAAGGCCGTG 59 16754687 16754705 TTACTGAGAACCTGCAGCA 59 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000083672 1 1 2 80 4 65113045 65113172 TCTTCCAATCATCAAAGTACCC 58 65113213 65113231 CCATCAATATGCCGGTACC 58 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000026716 1 1 2 137 9 17689305 17693097 CTCATGCTAGCAGGTTTGC 59 17688193 17688211 CATCTTCTGGATTGCGCTG 59 NA InUTR Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 1 2 2 60 1 90961664 90961682 ACCATTCAGGGTGGAACAG 60 90961104 90961123 CTTGGAGATGAAGTCAGGGA 59 NA DesignNoJunction Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161 3 1 2 81 5 134738190 134738997 TAGATGGGAATGGGTGCTC 59 134739042 134739060 GATCTTCCCTCTCCATGGT 58 NA Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 1 1 1 60 11 33890010 33890028 CTGTACAGAGCTACTCCCT 58 33893003 33893022 TAGGCTTGAGACATTCACCA 59 NA DesignNoJunction Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000083764 2 1 2 83 9 17208178 17208198 CTCCTTCAATGTGGAACTGTG 59 17204707 17208133 TTCCATCTTCAGCCTCTGG 59 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 2 2 2 80 18 28654625 28654643 GACTGGCCATCAGATTTGC 59 28654687 28655896 AGCATCACCTTCTCCAGAG 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695 3 1 2 122 11 7210335 7210353 TCCGAAGCTCAACTGAAGG 60 7210434 7265848 CTGGTTAAACTTCTTATACCTGCG 60 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 1 2 2 139 X 15449238 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451890 AAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 3 3 3 80 1 214154476 214154494 TTCCATGAGGCTGGTATCC 59 214154339 214154434 GTTCTCCAGTTTGAGTGACTC 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000091292 3 1 3 107 1 214157219 214159066 ACCAGAAGACTACACTGTGC 60 214157131 214157152 CACTTGGTATTGTTGGATCAGG 59 NA Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 2 2 2 80 4 2063322 2063343 GAACCAATATCAAACGAGAGTG 58 2063383 2063794 CAATAGGCTTGGATTCTGGT 58 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165185215 165185235 GAATGTAAACAGACCTGCCAG 59 165176321 165185173 TTGCTGAAGGAACTTCCGT 60 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000091227 2 1 2 80 7 30104792 30104811 GATTAGCCTTCAACACAGCC 59 30095638 30104749 GTTAGCACTCCTTTAGCCG 58 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910 1 1 2 87 7 30095634 30113478 CTTATTTGGAGTGCTAACAGAG 57 30095568 30095586 CTGCACATTGTTGTATGGG 57 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000067281 1 1 4 80 5 58711025 58713080 GGGACTAAGGACTACTGGG 58 58713121 58713142 TGAATAGAGACTTCTCCCACAG 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000057435 1 1 2 80 12 40447494 40448822 TTATGGAACAGAAGGGTGAC 57 40448865 40448883 AAGGTGAAGAAAGGAAGGC 58 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000084825 1 1 3 266 2 124149565 124149583 GTTGTTCTCGGCTTTGCTC 60 124134790 124138859 CTGTGTCTCCAATATCTTCTCC 58 NA DesignRelaxed Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 1 3 3 80 2 124134788 124138856 GAAGATATTGGAGACACAGCA 58 124134728 124134746 GATGCTCAACAGAGACCTG 58 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054 3 1 3 94 16 49562101 49562120 AGAAACTCGCTTATGGTCCC 60 49553511 49562044 AGTAGTTCACATCCTGCGG 60 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945 1 1 2 80 3 1801830 1801849 GGAACGTCTTTGACTTTGTC 57 1790830 1801788 TGAAGTTGTTCTTTACCGCA 58 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000006162 2 1 2 80 3 1893845 1893863 TCCTGTTTGCCATCTTGAC 58 1883609 1893804 CCGCATCATTTGTATTGTAGAG 58 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 1 2 2 80 7 41186203 41189729 CCTTGCTTCTTTCAGGTACTC 59 41189770 41189789 CAGTTTGAGAGTTCACACCT 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069 3 1 2 80 3 15374120 15379234 GAAAGTAGAGGAGGTGAAAGTC 58 15374061 15374079 TTGGTCTTATCGCACTGAG 57 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841 2 1 2 80 1 28564232 28564253 AACAGCAGCTTTCAGTAATGTG 60 28567837 28569648 ATGGAGTACCCAATAGAATGAGAC 60 NA Rattus norvegicus 81 Mier1 ENSRNOG00000007175 ENSRNOT00000086765 1 1 2 81 5 122643554 122655276 GATGTGATGCTGCCATCTG 59 122659425 122659443 CAGCTGACGGATCAAACTC 59 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000068077 2 1 2 84 6 71349048 71349066 CTCCTTCAGGACTCCTCTG 59 71180530 71349001 ATTCAGGGAACTTCTGGTCC 60 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 1 2 2 84 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989038 22992503 CTCAGTGGTCTCTTCCTGG 59 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 2 2 2 85 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989037 22992502 CCTCAGTGGTCTCTTCCTG 59 NA Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 2 2 2 84 7 141092658 141093221 TACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000044015 2 1 2 88 8 4333344 4333362 CTGGAAGAATGGAATGCCA 58 4333411 4375131 CACACTGATCCATATTTGTCTC 57 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713 3 1 2 80 13 69766151 69766171 CATAGTGGAGTCAGATTCCAC 58 69765629 69766112 AGAGAAATATTCTGAGGGTCTG 57 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000086244 1 1 2 80 12 37761832 37765907 TAAATCAGGAGGCCTTGGA 58 37765948 37765969 GAAACTTCTTGAGTGTCATTCG 58 NA Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 1 3 3 101 3 22943647 22943665 AACTTGGAGCTCCACTCTC 59 22938849 22943585 ACCAATGTAACCTTGATACCTG 58 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000005861 1 1 2 80 6 86739088 86739109 GTTCAACAAGACTTTCTTCTGC 59 86739147 86744799 TTGATGACCTTGTAAATCCTGC 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006 2 1 4 142 16 54293338 54298750 AGTCTCTGTTTGTGGGCTC 60 54298856 54298874 GTTCTTCCTCCTCAGGCAG 60 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 2 1 1 60 7 5655687 5655705 ACAGATGACCAACAACTGC 58 5657551 5657572 TCAGTGAGTAGGTGAAGAAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 3 3 3 80 13 71132311 71132329 GACTGCAAAGCTAGTCACC 59 71132373 71136849 TCGATATTCACCTCCCGTG 59 NA Rattus norvegicus 81 Aurkb ENSRNOG00000005659 ENSRNOT00000008492,ENSRNOT00000091016 2 2 2 80 10 55631044 55631650 GGATTGTCAAGGTAGACCTG 58 55631692 55631711 TATGTTTGAGCAGCTTGGAG 58 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000073286 3 1 2 80 8 85795617 85795638 TGGCCTATTAGTACCAAAGGAG 59 85795556 85795578 AACGGCTCTTCTTAGATTGGT 60 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 2 2 2 61 7 60316398 60316416 CTAGCAGGCTATCGTGGAG 60 60319996 60320014 TTACTCTCATGCTGAGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000008298 2 1 3 93 10 74537199 74568352 TGAAGGCAGTGGAAGACTG 60 74568409 74568427 CCCTGTACATGCAGTCTCC 60 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071 3 1 2 101 6 986475 986493 AGAACACAAGGAGACAGCC 60 970091 986411 GTCGTCAAATATGTGCCTGG 59 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000046370 3 1 2 81 11 4261687 4261705 CTTATCGATGCGAAGCCAC 59 4177343 4261642 GCCAGAGAATTGGGATCGT 60 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 2 2 2 82 4 169161728 169175827 ATACTCCAGAATTCTCTACTCAGG 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889 2 1 2 85 11 17558997 17559235 AGTGGCATGGAGGATACAC 59 17559278 17559302 CAGGTAATTCCAGATATTTCCATGG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000086093 1 1 2 89 8 87211820 87211845 CAGAGTACGTTGAGAGCCA 59 87211898 87211916 TAACCTCACCATAGCGCTC 59 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 3 2 2 81 13 73689565 73689588 AGATGATCTTGAGAGCTCTTACAG 60 73684777 73689525 TGCGGCTTCATCTCTAGAC 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 3 2 5 80 2 258837765 258843814 GAATGTGTCCCTTACATGGC 59 258837704 258837727 TTCATAGATACTTGGAGAGTCCAC 60 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654 2 1 2 105 5 14297762 14297780 TGGAGAATTTGGAGCAGCA 60 14295175 14297695 TCAAATGAGCTAAGGTCCTGG 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 3 2 6 81 12 41262183 41262202 CTGTACTTCCTGAATTGGCG 59 41230421 41262141 TCTCCTTACACAGTTGGTACC 59 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 1 2 2 80 11 15495176 15495194 ATGTTGATCCATCCAGAGC 57 15495238 15498329 ACTCACTCACATCTTGCTG 58 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000077715 2 1 2 81 6 98437669 98438566 ACTAGGGAGTATTATCAATGGC 57 98437609 98437629 CAAAGGGATCAACACTTTCAC 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 3 3 7 90 19 15151176 15151196 GGACAACATTGACAACTTTGG 58 15151250 15165619 AGACAACACAAGAACAGAGAC 58 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000072225 3 1 3 108 8 90629291 90629311 GATTAACAGAGCTGCTAAGGG 59 90628667 90629222 AGTTCTCTGTGCCTCTTCAG 60 NA Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 1 2 2 100 7 70538435 70552572 GGGAAAGCCATATGTCTTCG 59 70538259 70538372 CAGCAAGGACGTCTTTGAC 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596 1 1 2 81 10 36590001 36590019 ATCTGTCTCAGAGAAGCCT 57 36590064 36590558 GTAAACAGGAATCCTGCCA 57 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942 1 1 2 80 17 12641583 12641601 GTCCTCACGGTACCATGTC 60 12639594 12641076 TGACCAAGTCACAGGATGG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000090638 3 1 6 192 1 41635493 41635511 TTCAGACCTACACTGGCAG 59 41635318 41635338 GAGATGCTGACTCAGGTCTC 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000047472 1 2 6 80 1 41618659 41619702 GCAGTCAGCAGGATTTGTC 59 41618597 41618618 TTCTTCCTGATGTAGGACTCAC 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903 1 1 3 80 5 136051598 136051618 GGTGAACTTGGAGAAATCCTG 59 136049264 136051559 TCGTCAATGTCAATCTCTTTGC 60 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903 3 1 3 81 5 136051600 136051619 CGGTGAACTTGGAGAAATCC 59 136049264 136051559 TCGTCAATGTCAATCTCTTTGC 60 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000079371 2 1 3 80 5 136049256 136049274 GACATTGACGATGTGGCTG 59 136049189 136049212 TTCTCCTGCAGTACTGTCC 59 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 1 2 2 80 X 16180433 16184451 ATCAGCACAGATCAGGGAG 59 16184494 16184513 GAGGAAAGCAAACAGGAGAG 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000088313,ENSRNOT00000045532 3 2 4 80 2 18522665 18525804 TATCTACCAGGACCTGATCTC 58 18522605 18522626 CACATAGGAAGTCTCAGTAGGA 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854 2 1 2 81 11 24441019 24447176 AAATGAAGTTGAGCCTGTCG 59 24435416 24435435 GATGTTTGTCAACCCAGACC 59 NA Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 2 3 3 83 7 144941888 144941906 CTAAGCGTCTGCTCTACTG 58 144941492 144941844 GCTTAGTACCTTTGTTATGTGC 58 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151 3 1 2 82 8 91384940 91387818 CCAAAGGCTGATAAAGAGAAGTG 60 91387858 91387878 GGAACTGATAATGGTGGTGAC 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000078874 2 1 3 81 19 15209048 15212169 CTGCTCCTGTGTTATCTCCT 59 15212212 15212231 AGAGCAGTATTGAGGGACAC 59 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000028347 2 1 2 80 1 226851983 226852003 AGTTCTGAATCCGACTATGAG 57 226850568 226851942 CCTCTGGGAATTGTAGAAGG 57 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000074723 1 1 2 124 2 113605823 113605842 GTATCACCTGACCCTTCAGG 60 113599727 113605736 CACATGGCCCATTTACGTG 60 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 1 2 2 80 6 91891993 91892014 TAGATGTGGACCTCAATAGCTC 59 91888219 91890318 TGAAGAAAGACTTTGAGTGTGG 59 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 1 2 2 80 12 42486590 42488682 CTATCAGAATGACAAGATAACCCAG 59 42486534 42486552 CTGCCATTGCCAGTATCTC 58 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000058689 3 1 2 118 13 84591836 84598177 CTACACCAGCATAGATTTCAGC 59 84598255 84598274 GTAGGAAGCATCATGGTGTG 59 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 1 2 2 80 5 151454915 151454934 ACACCATAGAAGAGGCAGAG 59 151453367 151454797 AATCAGGCTCTTGGGTCTC 59 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000080188 2 1 2 82 10 109604597 109604896 GCAGAAGGTACAATAATCCGTG 60 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 3 2 2 125 7 117777670 117777880 GTTTGCAGGAAGCATACAC 57 117777969 117777987 GGCAATACAAGTTCTGGCT 58 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 3 3 3 124 5 2051971 2054771 AACACAATGGATGGAGAGG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 2 2 3 81 20 5109838 5109857 CTCACATGCTCTTCATGGTG 59 5108905 5109794 TTGAAACCGTAGAGCCTGG 60 NA Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 2 2 2 80 8 76545393 76560133 ATATTGAGGTTCTCCAGGAGC 59 76545333 76545353 TCTCCAGTGTCTTTAAGGCAG 60 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849 2 1 2 80 9 76638715 76638733 TCATAGAGAAGCTCACGGC 59 76621472 76638673 GCAGTAGATGTCTCATTCCCA 60 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000066431 2 1 2 80 7 118168640 118172119 CTATCCAGGTGTGGTTTACC 58 118159161 118159179 GGCTGTGCATATCTGTAGG 58 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000002881 2 1 2 80 11 30400986 30401004 GTTCAGGCTATCACAGCTC 58 30398536 30400944 CTCATGTACCTTGTCAAATGC 58 NA Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 3 1 1 62 1 31531999 31532017 CACTGACTGGGAAGATCCA 59 31533640 31533658 GGTCCAGCACTCTTAGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000018137 2 1 2 100 1 234364031 234377621 CTGCACAAATTGAAGTGATACC 58 234377682 234388937 CCTGAAGAATCCCTTGCAG 58 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 3 2 2 80 1 83104083 83108846 TTCCTTCATGCAGTTTCGC 59 83108890 83108908 CCACATAGCATGACCACAG 58 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000050344 2 1 2 91 8 116841404 116841668 GTCTTGGAGAGCCAGACAG 60 116841331 116841349 GGGTTGGAGAACTTAGCCA 59 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 2 2 2 80 2 96497888 96497907 TCCTTTGGGAAACAAACCTC 58 96488699 96497845 GACTTGGTGTTAGCTCCTG 58 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 2 2 2 80 10 62689402 62689557 CTTCCCAGTCAAGATTGAAATCC 60 62689597 62689615 TCATCGCAACCATTGAGGT 60 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 2 2 2 80 7 18600668 18600687 TTGTCCTTCATTGAGACCTC 57 18599925 18600626 ACGGTAGATTTCTGTGAGGA 58 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000002812 2 1 3 110 11 31115568 31117713 AAAGAATTTGGAGCACCCA 58 31115324 31115342 ACCATATCCAGAAGGTCCT 57 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 2 2 2 84 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122546 5122564 TTGCCAACTCTTCCATGGT 60 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 3 2 2 80 1 89182309 89182329 AGAACATCATCCCATCTTCCA 59 89182119 89182270 TTCCTGTTAACTTCCCATTGAG 58 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000024445 2 1 2 80 9 94897839 94898738 ATCTTTGGGAGACGCTCTG 60 94898780 94898800 CACATCTTTACCAGAAGCAGG 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 2 3 3 80 19 21479336 21481582 AGAAGCTCCAGATCTTAGATGC 60 21479277 21479298 CTTCAATCTGTCTGACAAGCAG 60 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660 3 2 3 80 19 21484626 21492244 ACTGCACAGAATTGGAACG 59 21484564 21484585 ATCAGTAAAGTGTAGTGTGGCT 60 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000079935 1 1 6 80 5 150162919 150163394 TTGTTTGGATGTTCCAACCAG 59 150162859 150162878 CCTCAATCCCTTCTCCTTCC 60 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067349 2 1 6 98 5 150116059 150122081 CAAGCTCAGGATTTAGACAAGAG 59 150115983 150116001 TGGTTCGGGTACTGATTCC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 1 2 3 80 14 72335551 72335569 GTTCTCAGCCTTTGGATCC 58 72333614 72335507 TCATAGCAAGTTCCACAGC 58 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 2 2 2 80 8 116514282 116514301 GGAGGCAATGTTGACTACAG 59 116514138 116514243 CTGGTAATCCTGTGAGTATTGAG 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 3 2 3 82 20 4534058 4534076 CCGGGACAGAGACAAAGAG 60 4534121 4534227 GGAATGAGTCTGACCTACGG 60 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 1 2 3 87 14 81944455 81944474 GCTGTCTACATCAGAAGCCA 60 81948658 81950490 CTTGTGAACCTGTCTATATTCCAG 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684 2 1 2 82 1 251266107 251266127 AAAGACACAGTCATCCTACCT 59 251262383 251266063 AGGAGAACACCTTTGGGAG 59 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 1 2 2 80 4 66418796 66420754 TTGACCCAGACACATTCAC 58 66420798 66420816 GACACTCTGTTGACACCAG 58 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 2 2 2 80 2 206076486 206076504 ACAATCTCTTCGAGGCCTC 59 206076547 206109302 CCACACTTTCACTAGTAGCG 58 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000082892 1 1 3 80 8 128229094 128235583 CGTCATGGCGTATGTATCAG 59 128229033 128229051 TTCAGAGCTCTCAGGACTC 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000090755 2 1 2 146 1 263917805 263917988 CTACTCCAACATTTGGGCC 59 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769 2 1 2 80 11 31836024 31836149 ACTTGTCAGGCAAACATCC 58 31836192 31836211 CCAAGAGAAATTCAGGTGGT 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 2 2 2 81 1 89353353 89354513 CTGAGCGTCATGTATGCAC 59 89353290 89353308 ACAGGATGGAGACTGTCTC 58 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 3 2 2 80 14 82777267 82786027 ATTGGACTAGGTCGTGTGG 59 82786068 82786089 GTATGGGTCATAGAAGAGGACG 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000068592 3 1 2 172 3 148714455 148714473 TGTTTCACCGAAAGGACCA 60 148712374 148714319 CCAATTGCAGACCTTGCAG 60 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 3 2 3 80 9 100564153 100564171 GAATCCAGCAGATCACTCG 58 100562614 100564109 GCTCTACACTGTGAACTGG 58 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 1 3 3 121 2 148050380 148050398 ATAACCTGATGTGCGATGG 58 147957465 148050295 ATCTATTTCTGCTGGCGTG 58 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230 1 1 2 80 7 70372587 70373498 CCTTAGCACCGACTGTACC 60 70373542 70373560 TGCTTCTTCACCATGGGAG 60 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230 2 1 2 80 7 70372588 70373499 CTTAGCACCGACTGTACCC 60 70373543 70373561 CTGCTTCTTCACCATGGGA 60 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 3 3 3 80 8 78379473 78385827 GCCTTGGCATCTATTTATTCTC 57 78379414 78379433 TGAAGGAGATCCTACTGGTG 58 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066896 1 1 5 95 1 215673201 215676241 GGAACCAGAGGAGAAACCA 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 1 2 5 80 7 80745186 80745205 TGGTCAAGAAGATGGCAGAG 60 80745248 80777746 GTGTGGTGATCTCCCACTC 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 2 2 5 80 7 80745248 80777746 GAGTGGGAGATCACCACAC 60 80777789 80777808 GAAAGATTCTGGCTCCAGGT 60 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000023446 ENSRNOT00000037931 2 1 1 80 14 3298201 3299060 AGGAAATGGGCTTTACGTG 58 3298139 3298157 GGACAGCATAGAACGACTG 58 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038 1 1 2 109 1 277166031 277166050 CTTCCATAAGATGAAGGGCG 59 277162976 277165959 TGTACTCCACCTCACTCAC 58 NA Rattus norvegicus 81 Cs ENSRNOG00000023520 ENSRNOT00000033726 2 1 1 80 7 2771966 2771986 TCAACAGTGAAAGCAACTTCG 60 2772026 2776130 AGTCTTCATAGATGAGCTCCC 59 NA Rattus norvegicus 81 Mospd1 ENSRNOG00000002332 ENSRNOT00000003192 3 1 1 86 X 157759931 157761591 GTGTGGATATTGTCATTCGTC 57 157761639 157761657 TTTGTTCCGAAACCTGGAG 58 NA Rattus norvegicus 81 Celsr2 ENSRNOG00000020058 ENSRNOT00000027263 3 1 1 80 2 211185866 211185884 TGGAGATGCTCTAACTCGG 59 211185709 211185823 TTCTTGAGGATGCCTTTGTG 59 NA Rattus norvegicus 81 Pdha2 ENSRNOG00000016223 ENSRNOT00000021719 2 1 1 60 2 246737045 246737065 CAGGGATCAGTTATCGTACAC 58 246737005 246737027 ATTGGATCACTCTTACTCCTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 1 2 2 80 X 20144999 20145019 TTAAGACGGCCAAAGAAACTG 59 20144747 20144960 CATCATTAGTAGCTGTCACCTC 59 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029,ENSRNOT00000076929 3 2 2 129 10 88336516 88336534 TGATCGAAGGTCTGGACAG 59 88336833 88336851 AATAACAGCACAGCACTGC 59 NA DesignNoJunction Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029 2 1 2 86 10 88336904 88336922 GTGTGGTACCAGGATCCTC 59 88336972 88337263 GGAGGAGAACTCTTCTGGG 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 2 2 2 80 8 36235133 36240063 CCTTGACTGTCAATGGACC 58 36240107 36240125 ATTTGATCTGGCCCTTCTC 57 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 2 2 6 80 10 89217313 89217333 AATAGCTTCACTCTGATCGGG 60 89217148 89217272 GTCTCCAGTGACCTTGAGTC 60 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 3 2 2 99 3 166985499 166987008 CCTTGAAGGAAAGAGGCCT 59 166985418 166985438 TGGTCGATAATGCGTATTTCC 59 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 3 2 2 126 10 56578180 56578291 GACGCCCATGAATATTAAGTACG 60 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 2 3 3 82 12 46801167 46801916 CATCTTGGATAAAGTGGTGACAG 60 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305 1 1 2 82 8 118393836 118393854 ACTGAGGACTTCATGAGGC 59 118393900 118395798 TAGGACAGATCCCTGTCCT 59 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000039696 1 1 2 123 8 115255794 115255812 GAAGGAGACAAAGAGCAGG 58 115252085 115252659 TTAAAGGAAGGAGCTTTGGT 57 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 2 2 2 80 5 76414449 76415251 CAATCCAGAATGATCAGGTGG 59 76415292 76415311 GCATTCTGAAATTGGCTCAC 58 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 3 2 2 80 8 118827255 118827276 TAAAGATGAACGAGCTCAAGGT 60 118827313 118830159 CGAGAGGAACATTCAATCATGAG 60 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 3 1 2 87 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561901 83562976 GTGTCTCTTTGTCACCAGG 58 NA DesignRelaxed Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000092151 2 1 2 109 1 255069900 255069918 TATATGACAAGATGGCGGC 58 255075448 255085650 ATACCATCGGGTAGGACTG 58 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015 3 1 2 82 2 211221390 211221409 TCTAACTGCACGGATTACCA 59 211220520 211221345 ACAAACTCCACCTTGTCCA 59 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 2 2 2 80 10 91925997 91926490 CGTTATTGGAATGACCAATCG 58 91925937 91925958 ATCTCCATCTTAACTTCCAGTC 57 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 3 2 2 80 10 91883440 91883460 GTCAAAGGGAAGAAAGTCTGG 59 91880608 91883398 GTACTCAGGGTCCATCTGC 60 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 1 3 4 80 9 47030662 47030683 TCATCTGCTTCGTTAAGAACAC 59 47030721 47032109 AATTCTTGAAGTCAGGAACTGG 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 1 3 4 80 9 47030662 47030683 TCATCTGCTTCGTTAAGAACAC 59 47030721 47032109 AATTCTTGAAGTCAGGAACTGG 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000015365 1 1 3 80 8 87355573 87355593 AGTCTGTGGAGTTATCCAAGG 59 87315942 87355531 TGACATCTTCTCGAGCCTG 59 NA Rattus norvegicus 81 Filip1 ENSRNOG00000011521 ENSRNOT00000015365 3 1 3 81 8 87355573 87355594 AAGTCTGTGGAGTTATCCAAGG 60 87315942 87355531 TGACATCTTCTCGAGCCTG 59 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000091128 2 1 2 84 8 61715121 61715254 AAATCTGGACTGGGACTCAG 59 61715299 61715319 TTGCCTGGTGTTAACATAGTC 58 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000091128 3 1 2 85 8 61715121 61715254 AAATCTGGACTGGGACTCAG 59 61715299 61715320 TTTGCCTGGTGTTAACATAGTC 59 NA Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 1 2 2 81 10 91098712 91100969 TACTTCCTCCGAGGGTACC 60 91098649 91098668 GCTTCATGTACTTGAGCAGC 60 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 1 3 3 80 8 26434089 26434108 CCAACCTCCCAAATCAAGTG 59 26434149 26447686 GTCCAGATTCACCTACTACCA 59 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 2 2 2 101 1 101085490 101085509 TTTCCAGTACGACCATGAGG 60 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000050819 3 1 2 80 X 23489659 23489677 CCTCCTAGAGGAAGCTCAG 58 23488145 23489615 GGACAAGAGTTGTCCTCTG 58 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000090424 1 1 2 80 8 22825596 22825616 CTGGATGAACAAGAGTTTGTG 58 22825448 22825554 ATAGAACTCCTCTAGCCGG 58 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 2 2 2 80 2 38983671 38983689 ACTCTCATGGACAGTCTGC 59 38982034 38983629 CAGTGTCATTCGCATAACCTG 60 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179 1 1 2 85 10 90410631 90410801 TTCATGGAGAGCAGATGGC 60 90410411 90410429 CACCAGTAGGTCATGCCTC 60 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515,ENSRNOT00000078891,ENSRNOT00000041655 1 3 3 80 8 96262302 96262421 TGTTGGCACTGAGATATTTGTG 59 96262243 96262263 CCAGCTTTCTCAAACAATGGA 59 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 1 1 1 78 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482772 35482792 TTAGAGCATGAGAGCTTAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 3 3 5 89 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4419002 4419022 TGAAGGCAATGAAGAGAAGGA 60 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086 3 1 4 81 8 39200847 39209298 GTCAGGATATACAAGTTGCTGTG 60 39200788 39200806 TCTCCCAAAGTTTGCACCA 60 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 2 3 3 80 9 50708349 50708368 TCGGCACATAAACATACGTG 59 50708407 50709075 GCTATATCATACCCACATACCTC 58 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 1 2 2 80 9 64835039 64837464 GAAATTAAGCACTTTGTCAGCG 59 64837505 64837523 CTGTTCAATGTCGCAGGAG 59 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826 1 1 2 80 2 45230143 45231286 CAAATACAGGAGCCTCTGTC 58 45231328 45231347 GAAGTAAGAGGTTGGAAGCA 58 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000077719 2 1 2 81 1 72881336 72881357 TCTAAAGTTCTGGCTCCTACTC 59 72881397 72882805 CTCACTGAGGACACTCTAGAG 59 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574 1 1 2 84 2 227580639 227582831 CTAGCTCAGCAGTTGGGAG 60 227580573 227580591 TTTCAGCGATCTCCCTCTG 59 NA Rattus norvegicus 81 Ube2c ENSRNOG00000015131 ENSRNOT00000082303,ENSRNOT00000020323 2 2 2 82 3 161237439 161238011 ACCCTCATGATGTCTGGTG 59 161238057 161238075 CCATGGATGGTTCCTACCC 60 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 2 2 2 80 3 161816963 161818569 CTGAAACAGAACAAGGAGGTG 59 161816903 161816922 AGGAGCGATGAAATTCAGTG 58 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215 3 1 2 98 2 227199238 227206859 GAAATCCATGGACACGATGTC 60 227199160 227199178 GCGATTACCGAAATGGGAC 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488 1 1 2 80 8 132515155 132518469 CCCTCACAATACTCATAGTCCT 59 132518509 132518528 TCTTTCCCTCCGATGTACAG 59 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000055839 1 1 2 108 5 159569694 159574307 AATGAGAGGGACACAGAGC 59 159569519 159569537 CTCTCAGCATGTCGTTCAC 59 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 2 2 2 81 16 74548732 74550599 ATGAACTGGGTCCTATCCC 58 74550644 74550662 CAATCCACCGGATACACAG 58 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353 1 1 2 81 3 80411685 80414297 CTGTGCTATAAGAAAGAGGGTG 59 80414339 80414357 CCAGGAGGTGAATTCCCTC 60 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 3 2 2 80 16 69070875 69074895 TCATGAAGAAATACCAGCCCT 59 69074937 69074955 TGAGGACCAACTGGATCAG 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128 1 1 2 80 16 69067593 69067612 GGAGTCTAAGTGTGAACCGA 59 69067654 69068378 ACTTCCAGTCTAGGCTTCAC 59 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 3 3 3 80 5 59630462 59630480 GTCTGTTACATCCAGCTGC 59 59624444 59630418 CTGTTCCTTGATGGAGCTG 58 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000078862 2 1 2 91 5 101104596 101105826 TCATTTACTCAGCATGCTGTG 59 101104525 101104543 GTGAACTGCACATGTCGAG 59 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000033653 2 1 2 80 3 424002 429521 TATTCTGTGAGGTGAGTGTGG 60 423942 423961 ATTCTGGCACCTTCAAAGTG 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000079096 1 1 4 121 16 81843115 81843133 AACATCCCACTCACTGGAG 59 81841616 81843030 TACCTGAAAGCAGCTTCCT 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000043170 2 1 4 83 16 81897672 81979866 AGCCTCAGATGAAATCATGC 58 81897608 81897627 TAAGCAAAGCGCTTCTTCAG 59 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095 3 1 4 83 16 81912519 81912537 TTTGAGCCTCATCTCCGTG 60 81897668 81912473 TGGTGCATGATTTCATCTGC 59 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194 2 1 2 81 3 151329858 151332977 GGCAGAAGAAACATATGCCTC 60 151335338 151335356 TGACGAATAGCCTTCCGTG 60 NA Rattus norvegicus 81 AY172581.18 ENSRNOG00000032609 ENSRNOT00000048525 3 1 1 60 MT 5129 5147 TGAAGCCAGTAAGTAGGGT 58 5087 5107 TGGAAGGATTCAAACCTACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060522 ENSRNOT00000083901 2 1 1 60 5 5737091 5737109 CTGTAGTACGCTATGCCGA 59 5737049 5737068 GGAGGTCACCATATTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060109 ENSRNOT00000081535 3 1 1 60 5 135784921 135784941 GAATCCTCTTCCTCCCTACTG 59 135784881 135784900 TCCTCCTTTATCCCATCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000053278 ENSRNOT00000079766 2 1 1 60 5 5464375 5464395 AGTAAATGGTCTTCTGCAACC 59 5464414 5464435 TCCTGTATGTGTTAGTACTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059291 ENSRNOT00000088361 3 1 1 60 5 22830782 22830800 TCTGACCTCTGCGATTTCC 60 22830740 22830761 CACCAACTACCACAATTTATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017922.1 ENSRNOG00000060405 ENSRNOT00000087476 2 1 1 81 15 34634258 34634677 AAGAGATCACCATATGAGACTCC 59 34634199 34634223 CTTCTCCTCCATAAGATACAATACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000056354 ENSRNOT00000080766 3 1 1 60 2 49203740 49203761 CAGGGTTTATTTGGTGATCTGG 59 49203781 49203800 GTGAGAAAGAAGGGAACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 1 1 1 76 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35953410 35955776 AGAGCATGAGAGCTTAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054911 ENSRNOT00000077732 1 1 1 60 8 25522799 25522817 TTGTCGGTAGGTGGTAGAG 58 25522839 25522859 ATACAGCAGTTCATAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000054318 ENSRNOT00000083725 2 1 1 60 2 210843415 210843435 CCAACAATCCAATGATTCTGC 58 210843456 210843475 AATGGACTGGTTTCAAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060836 ENSRNOT00000091638 2 1 1 67 2 198597576 198597594 CTTATCCATTGCACTCCGG 58 198597527 198597545 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056744 ENSRNOT00000092087 2 1 1 61 5 137274086 137274108 GAACGATACAGACATTAGCATGG 60 137274129 137274147 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036044 ENSRNOT00000054167 2 1 1 60 11 72575271 72575291 CCAGATCTCATCTGATCTCGG 60 72575231 72575250 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000060760 ENSRNOT00000081657 1 1 1 92 11 7583039 7583057 TCCTGTCCTAGCTCCAGAG 60 7582965 7582985 CCATTAGACAGTTCCTTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048748 ENSRNOT00000074754 3 1 1 76 11 5746944 5746963 TCTTACTGTGTTACGCCCTG 60 5746887 5746905 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058536 ENSRNOT00000080027 1 1 1 60 8 67905434 67905452 GAGAAGATTAGCATGGCCC 58 67905476 67905494 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052659 ENSRNOT00000077407 3 1 1 60 16 60112175 60112195 GAGTACATCCTCAGTCTGAGC 60 60112135 60112153 ACATCAACCTCTGCTCACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000056601 ENSRNOT00000089049 3 1 1 60 2 146466917 146466941 GTTACTAGAGAAGTTTCTCTGACTG 59 146466958 146466977 GCTATGTCTCGTCTTTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060895 ENSRNOT00000082804 1 1 1 60 11 19700052 19700070 TTGGAACATCTTGCAGCAC 59 19700010 19700029 GGCCATGCTAATCTACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057446 ENSRNOT00000083954 1 1 1 60 8 110837277 110837296 CGTGTAGAGATTAGCATGGC 59 110837317 110837337 TGTAAGGCTCCACAAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051997 ENSRNOT00000087319 1 1 1 60 8 131897370 131897391 ATTACAGAGAAGATTAGCACGG 58 131897331 131897349 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056250 ENSRNOT00000078902 1 1 1 60 16 51239318 51239336 GAGAAGATTAGCATGGCCC 58 51239360 51239378 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056250 ENSRNOT00000078902 3 1 1 60 16 51239312 51239334 GATACAGAGAAGATTAGCATGGC 59 51239354 51239372 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058113 ENSRNOT00000080814 1 1 1 60 2 210827379 210827399 CTGTGTTGGAAAGTGATTGTG 58 210827421 210827439 TCCTCTTCCAGCAGTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060639 ENSRNOT00000090570 1 1 1 60 11 14141011 14141034 GATACAGAGAAGATTAGCATGACC 59 14141053 14141071 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034249.1 ENSRNOG00000046846 ENSRNOT00000072958 3 1 1 60 11 58661244 58661262 GAAATAACTGGGCAAAGGC 57 58661286 58661304 ACTGAGAAATGGGCAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ40 ENSRNOG00000057682 ENSRNOT00000079136 1 1 1 60 8 13870489 13870507 TGATGTTGTGATGATGGGC 58 13870531 13870549 AGGCTACTTTCATTCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051395 ENSRNOT00000079119 3 1 1 60 16 25809421 25809441 ATAGAGATTAGCATGGTCCCT 58 25809462 25809481 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055692 ENSRNOT00000086018 2 1 1 68 16 56611597 56611618 GTCAATGAGGTTTATTCAAGGC 58 56611645 56611665 CAGGGACATCGACATAAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056774 ENSRNOT00000086568 1 1 1 60 X 80139386 80139407 ATCTAAGGAACTTGACTGACCC 60 80139347 80139367 ACAGGGAAAGCACTAATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057474 ENSRNOT00000081241 1 1 1 75 16 73461213 73461231 ATGAGGTTTATCCGAGGCG 60 73461156 73461174 AATTACATCGCTGTCCCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033910.1 ENSRNOG00000052102 ENSRNOT00000080403 1 1 1 81 11 43932701 43932725 TCTGTTTCACTATTCGGATCTC 58 43932765 43932785 CAGCCGGTATATCTTTATCCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058256 ENSRNOT00000091984 2 1 1 60 2 82949124 82949142 GTCACATGCATGTTCACTG 57 82949082 82949100 CAGAACACTGAGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000058708 ENSRNOT00000078805 3 1 1 60 16 24545285 24545303 ACATGTGTCACTAGGTGGC 60 24545326 24545345 CAGGTCAGAACACTGATGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056077 ENSRNOT00000081135 2 1 1 60 X 31947535 31947554 CACATGTGCATCAGTAGGTG 59 31947494 31947514 GTCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042012.1 ENSRNOG00000048494 ENSRNOT00000073030 1 1 1 60 X 145822421 145822439 TGAAACCACCTTCAACTCC 58 145822463 145822481 GGCATACAGGTCTTTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036855.1 ENSRNOG00000056398 ENSRNOT00000082159 1 1 1 60 X 4286794 4286814 AGGACCAGATGAAACTTTGAG 58 4286835 4286854 TACAGTAGGTATGCCATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059941 ENSRNOT00000088216 3 1 1 90 17 47856781 47856799 TCTCAGAAGCTAAGCAGGG 59 47856709 47856730 AGACAACTAGCAGAACTATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057887 ENSRNOT00000084201 2 1 1 60 9 79596975 79596993 AGTTGGAATAGGAGCTTGC 58 79597016 79597035 TGAAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057374 ENSRNOT00000089691 3 1 1 60 X 3465622 3465643 ACAATACTGAGATTAGCATGGC 59 3465583 3465601 GGACCATGTCAGGAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057793 ENSRNOT00000082820 2 1 1 60 4 116782929 116782947 GATCACTACGGTTGACTGG 58 116782970 116782989 GTGAAGAAGGAAGGGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072054.2 ENSRNOG00000056787 ENSRNOT00000079734 3 1 1 83 1 260061053 260065782 AACATGAGGACCATTGTCTC 58 260065828 260065846 AGAAAGGGAAGCTGATGGA 58 Novel Rattus norvegicus 81 AABR07035368.1 ENSRNOG00000054882 ENSRNOT00000091384 3 1 1 61 12 11364215 11364234 AGAAAGGAGAAGGAGAGGAG 58 11364173 11364192 TCCTCCTTTCCTTCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033745.2 ENSRNOG00000057895 ENSRNOT00000085972 2 1 1 108 11 38776461 38776479 TTAGCACAGATGAAGCAGC 58 38776556 38776574 GCTTTAACCTTTCCTGCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002835.1 ENSRNOG00000031073 ENSRNOT00000050523 1 1 1 106 1 86653683 86653709 CTACACAAAGGAATAGCAATAGGAC 60 86653773 86653791 GAACACCCAAAGTGCTGTG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000058253 ENSRNOT00000090191 2 1 1 67 X 75529008 75529026 CTTATCCATTGCACTCCGG 58 75528959 75528977 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067736.1 ENSRNOG00000041717 ENSRNOT00000063470 2 1 1 60 9 60070211 60070229 GATGTCACATGGTGACAGC 59 60070169 60070189 TAACATATGCCTGTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042316.1 ENSRNOG00000056242 ENSRNOT00000085142 1 1 1 60 X 152584678 152584699 TCATGCACTGTATTTGTCTGAG 59 152584639 152584658 CAGGAACCATGAGGTATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061586 ENSRNOT00000077572 2 1 1 60 X 156720347 156720366 CTTTCCCATCGGATCTTGAC 59 156720387 156720407 CTTCAGTGTACTCTTCCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035541.3 ENSRNOG00000061371 ENSRNOT00000089349 1 1 1 60 12 19254271 19254290 AGGGTCCGCTATACTAACAG 58 19254230 19254249 CAATTTCAGGTGCAATTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058769 ENSRNOT00000085705 2 1 1 60 6 81053951 81053971 GCTCATACACTACACATACCA 57 81053911 81053929 TGCAAGGTCTGTGTTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053606 ENSRNOT00000081699 3 1 1 60 9 94908435 94908453 CTTCCCTAACAGCCCAGAG 60 94908477 94908495 TACTCCCTTGTGACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031734.2 ENSRNOG00000042376 ENSRNOT00000065447 1 1 1 60 18 30838423 30838443 TATCAGTACTCTTCCTCCTGG 58 30838466 30838484 GCTGATCTGGAGGAGTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045182 ENSRNOT00000070449 2 1 1 60 X 80217874 80217895 CACACTATCTCATGTGATCTCC 58 80217835 80217858 CTATCCAAGTACTAATCAGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045182 ENSRNOT00000070449 3 1 1 60 X 80217874 80217895 CACACTATCTCATGTGATCTCC 58 80217835 80217859 CTATCCAAGTACTAATCAGATCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056424 ENSRNOT00000081890 2 1 1 60 9 51519343 51519365 CGATACAGAGAAGATTAGCATGG 59 51519305 51519323 AACGCTTCAAGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044473.1 ENSRNOG00000046314 ENSRNOT00000072845 2 1 1 88 20 6945339 6945358 CGGTCGAGATCAAGAAAGGA 60 6945410 6945433 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000055787 ENSRNOT00000090555 2 1 1 60 15 28166476 28166494 GATGTATGCATGGGAGCTG 59 28166517 28166536 CAGTGTACCAATGACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000056449 ENSRNOT00000089605 3 1 1 60 16 90164115 90164134 AACATGCCTGATCTCTTCTG 58 90164155 90164175 AAGTACTAAGAAGGCTTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035975 ENSRNOT00000054098 2 1 1 60 16 39300289 39300307 ATGTGCCTGATCTCGTCTG 60 39300330 39300349 TCCAAGTACTAAACAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057211 ENSRNOT00000088051 1 1 1 60 3 114432242 114432262 TAGCCAATGAGGTTTATCCGA 59 114432202 114432220 AACACCAATGGCTTATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057211 ENSRNOT00000088051 3 1 1 60 3 114432243 114432262 TAGCCAATGAGGTTTATCCG 58 114432202 114432220 AACACCAATGGCTTATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041010 ENSRNOT00000062763 2 1 1 60 16 47464385 47464407 GGTACCAGAACTCATTTGATCTC 59 47464347 47464365 ATCCAAGTTCTAACCAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054722 ENSRNOT00000085308 1 1 1 66 6 75590253 75590271 TTATCCATTGCACTCCGGA 59 75590301 75590319 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055833 ENSRNOT00000077393 1 1 1 109 7 46482810 46482828 GTCAGGAAGGATGTTTCCC 58 46482719 46482740 CCATTACCACAAACTACTAGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053333 ENSRNOT00000092038 1 1 1 60 17 24046674 24046695 ATACAGAGAAGATTAGCATGGC 58 24046635 24046654 GGACTAGTTCACGAATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055274 ENSRNOT00000085486 1 1 1 60 6 107753315 107753333 GTTACTGTGTCACATGGGC 59 107753273 107753291 TGAGCACAGACATAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054364 ENSRNOT00000089431 1 1 1 60 1 94897819 94897843 GAACAATACAGAGAAGATTAGCCTG 60 94897783 94897802 GCTTCATGAATTCGCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060692 ENSRNOT00000078334 3 1 1 60 16 41019739 41019758 GGTGGCAGAGAAGATAGAGG 59 41019698 41019718 ATTCAGATGCTCGTAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058792 ENSRNOT00000088641 2 1 1 60 X 71442975 71442996 CAGAAGGATAAAGGAAGTCTCC 58 71443017 71443035 ATCCAAAGAGGAAGTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059470 ENSRNOT00000081387 1 1 1 60 16 82517418 82517436 CTCACTGCTTAACACCGAG 58 82517376 82517394 GGACATCATCCTCTTCCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059470 ENSRNOT00000081387 2 1 1 60 16 82517500 82517518 GTTGAAATGTTGGCTGGGA 59 82517458 82517478 AGACATGCAAATCAACTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051788 ENSRNOT00000087195 1 1 1 60 2 47297121 47297143 GGGACAAAGAAGAATAGTATGGC 59 47297163 47297181 TAATGCTTCGTGAGTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040715 ENSRNOT00000062468 2 1 1 60 10 86231452 86231473 CTGATCTCAGAAACTAAGCAGG 59 86231413 86231434 CTCAGTTGTTCTACAATGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061599 ENSRNOT00000081769 3 1 1 60 12 38675077 38675096 GATTACCCTTGGGATCCTCC 59 38675036 38675055 ACCAATTACCACGAACTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109427.1 ENSRNOG00000056259 ENSRNOT00000082987 2 1 1 61 9 100885054 100885072 GTTCCTTTCCCTGTTGCTG 59 100885096 100885115 GCTAGGAGAAAGACCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067743.1 ENSRNOG00000056312 ENSRNOT00000081493 2 1 1 64 9 60496705 60496723 AACATGTCCTTGCCCTCTC 60 60496751 60496769 ATCATGTCAGTGCCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013116.1 ENSRNOG00000053956 ENSRNOT00000087559 3 1 1 81 2 223121451 223121601 GCTTACAGGTGGTAAATGTGAC 60 223121639 223121661 GATGGTGACAATTTCTTCCAGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051738 ENSRNOT00000077769 3 1 1 77 8 65308020 65308038 GTGTCAGTAGGTGGCAGAG 60 65308078 65308097 TTGGGCCACTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057172 ENSRNOT00000078873 3 1 1 60 8 36342862 36342883 TTTGTTCATCCTAGCTTGATGC 59 36342901 36342922 TGAGTCCTAGACATAAGACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043564.1 ENSRNOG00000059734 ENSRNOT00000078023 3 1 1 80 19 29243213 29243234 CTTAGAGATGGAGAACACTGAG 58 29241310 29243175 AAGTGGTGATTTCTAGAGAAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000053157 ENSRNOT00000078693 1 1 1 60 8 79648788 79648806 TGCTCATTTAGCAGCACAG 59 79648827 79648848 GGGACTACAATACCCTTCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053157 ENSRNOT00000078693 2 1 1 60 8 79648792 79648810 CATTTAGCAGCACAGATGC 58 79648833 79648852 CACAGGGACTACAATACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061671 ENSRNOT00000089838 2 1 1 60 10 68008212 68008232 GGTACTTTAAGAGGCAAACAC 57 68008172 68008191 ACAGGATCCAAAGAGAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061671 ENSRNOT00000089838 3 1 1 60 10 68008210 68008231 GTACTTTAAGAGGCAAACACAG 58 68008171 68008191 GACAGGATCCAAAGAGAAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050574 ENSRNOT00000072609 3 1 1 60 10 105278140 105278159 TCTGTTAAGGCTTCCATCTC 57 105278099 105278119 CTAGCTTCCAAGATAACTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.4 ENSRNOG00000055877 ENSRNOT00000083044 3 1 1 60 1 1669199 1669217 GCATCAATGCAGAGCTTCC 60 1669157 1669176 GCCATGTTGAGAATGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052073 ENSRNOT00000079729 1 1 1 60 9 108838904 108838923 AGTTCTCAAGGTCCGTTCTG 60 108838943 108838964 AGTCCAGTTGAAGAACATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118147.1 ENSRNOG00000056651 ENSRNOT00000078600 1 1 1 88 1 88193292 88193310 GAGTTTGACTTGGCTGCTG 60 88193103 88193122 TTTAGAGGACAGTGTTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 U11 ENSRNOG00000053127 ENSRNOT00000084206 3 1 1 71 16 44929553 44929571 AAAGGGCTTCTGTCCTGAG 59 44929605 44929624 TTTCTTGATGTGGATTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141334.4 ENSRNOG00000058960 ENSRNOT00000086239 3 1 1 71 10 36691055 36691073 CTCTGTACAGGATCCTGGG 59 36691406 36691424 CATCAGCCTCATCGTAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000057346 ENSRNOT00000091033 2 1 1 60 16 8066692 8066713 GGTGTCCTTATTTCAATCAGGG 59 8066732 8066752 ATCAAGCTAGGATGAACAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012274.1 ENSRNOG00000059604 ENSRNOT00000090155 2 1 1 61 2 191986142 191986160 TGGGTTGTGGAAAGACCTC 60 191986099 191986117 ACCACCGCTATAGTAACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056685 ENSRNOT00000078691 2 1 1 61 6 18956393 18956416 AATCCAGTGAAGACTAGTATAGCC 60 18956433 18956454 GGAATGCTTCATAAGTTTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054608.1 ENSRNOG00000052603 ENSRNOT00000091109 2 1 1 60 3 163139047 163139068 TCTGGGTGAAGTTCTAATAAGG 57 163139089 163139107 CTCCTCTTCAATGCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.1 ENSRNOG00000046746 ENSRNOT00000075018 2 1 1 74 17 43621454 43621472 TTCCTGGAGAACGTGATCC 59 43621394 43621412 ATAGACCACATCCATGGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC097153.1 ENSRNOG00000045403 ENSRNOT00000070670 3 1 1 61 2 2478748 2478766 GAACAGCAGCCAATAGCTG 59 2478705 2478724 AGTTAACAACAGAGTTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027731.1 ENSRNOG00000049396 ENSRNOT00000072988 1 1 1 60 17 42825643 42825661 GCACTAGTTCAGCTGTTCG 59 42825601 42825621 CATGGATGAGAAGATGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.2 ENSRNOG00000060434 ENSRNOT00000079959 1 1 1 95 3 110508431 110572547 ACTGTTCTCTGGGACACTG 59 110572606 110572624 GTCCTGGAGGGTGATTTCC 60 Novel Rattus norvegicus 81 AABR07068355.1 ENSRNOG00000051904 ENSRNOT00000082949 3 1 1 96 9 101005211 101005229 CTTAGCCCTGATGACTCCC 59 101005395 101005414 TTTCCAGTACACTCAGAACG 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061173 ENSRNOT00000078794 2 1 1 61 10 25895178 25895197 CAATGAGGTTTATCCGAGGC 59 25895220 25895239 GCAAGTACTCTATGCTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000055961 ENSRNOT00000084941 3 1 1 61 10 92417397 92417418 TTTGCTAATAACCCACTGAGAC 59 92417357 92417375 ATCATGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767,ENSRNOT00000076749 3 2 2 84 7 115830004 115830360 TCTCCTTCAGAATGTGGTGAG 60 115829940 115829958 ACTGTCCTCAAGCAGTGAC 60 Novel Rattus norvegicus 81 AC140988.1 ENSRNOG00000032900 ENSRNOT00000051579 1 1 1 60 3 82971400 82971418 GGTCTTCGAGGAATAGCAC 58 82971442 82971460 GTGCATAGACACTGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2682.1 ENSRNOG00000051306 ENSRNOT00000076237 3 1 1 80 1 260678892 260678912 AAATGCAGATTTGGCTGAGAC 60 260645473 260678850 GTGGATCCAAAGTGCTGTC 59 Novel Rattus norvegicus 81 AABR07035428.1 ENSRNOG00000056768 ENSRNOT00000087860 1 1 1 82 12 14166732 14166750 AAGACCCACAGTTCCAAGG 60 14166261 14166686 ATGAAGTGGCGTCAGTCTC 60 Novel Rattus norvegicus 81 SNORD62 ENSRNOG00000056657 ENSRNOT00000078591 2 1 1 60 3 11240159 11240180 GTTCCAATAGATCCTTCTGACC 58 11240200 11240219 CTGTCCTCTTCATCTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065768.3 ENSRNOG00000055620 ENSRNOT00000079087 1 1 1 109 6 140407173 140407275 GACATTTCCAAGCTGTGCC 60 140407082 140407101 ATGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07065768.3 ENSRNOG00000055620 ENSRNOT00000079087 3 1 1 110 6 140407173 140407275 GACATTTCCAAGCTGTGCC 60 140407081 140407101 AATGAGAACCCAGAGACAGTG 60 Novel Rattus norvegicus 81 AABR07065776.1 ENSRNOG00000006321 ENSRNOT00000008286 3 1 1 83 6 140934814 140934836 CAAGACCTAAGCAAACTACAGAC 60 140934877 140934900 TTTCTTCCCGTCTTCTATCCC 59 Novel Rattus norvegicus 81 AABR07027870.1 ENSRNOG00000059510 ENSRNOT00000080800 1 1 1 80 17 47727296 47729582 TTGGTGAGAAGTGTGATGTG 58 47729625 47729643 GGTATGTGTCCAGTGTCAG 58 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000054406 ENSRNOT00000078410 3 1 1 63 17 37186464 37186483 AGGTGAGTTCCTCTTCAAGG 59 37186509 37186527 TTTCTTCCAAGTTGCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052314 ENSRNOT00000079150 3 1 1 76 2 179615880 179615898 ATTCCTACAGTGCTTGCCA 59 179615935 179615956 TCTATAACCTTGCTCTGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061724 ENSRNOT00000085314 2 1 1 60 2 62691070 62691088 CATCCATAGCAGTCTGACC 57 62691028 62691047 AAACCAAGCAGTCAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041779.2 ENSRNOG00000056851 ENSRNOT00000081147 3 1 1 80 X 139781845 139781867 CTAGGTATTCAGATGAGGTTCAG 58 139781902 139782286 CATCTGAATACCTAGTAACCTGAC 58 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000056164 ENSRNOT00000079132 1 1 1 60 3 150417931 150417949 AGAGACTTTGACAGCCCAG 59 150417971 150417991 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.2 ENSRNOG00000060924 ENSRNOT00000087056 1 1 1 60 1 174134773 174134793 CGTGCTTAATCGAGACTAGAG 58 174134815 174134833 AACTCTAGCACACCAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053739 ENSRNOT00000089489 1 1 1 66 3 7399569 7399587 TTATCCATTGCACTCCGGA 59 7399521 7399539 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053752 ENSRNOT00000082957 1 1 1 60 17 90799710 90799730 TCAAGGGTATACGAGTAGCTG 59 90799670 90799690 AAGTCTTGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063346.1 ENSRNOG00000051471 ENSRNOT00000078660 2 1 1 80 6 29518419 29518437 ATGGAGTCAGAAGCTGAGG 59 29518480 29522269 TCTATACACTGCTTTCGCCA 59 Novel Rattus norvegicus 81 AABR07036567.1 ENSRNOG00000020112 ENSRNOT00000027236 2 1 1 60 12 48560750 48560771 TGTTTGGTAGCTTGACTATTGG 59 48560789 48560810 GAGAAGAGTTGCTGCTTTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051386 ENSRNOT00000089526 3 1 1 60 X 104127696 104127718 GTGTGACCTAGCTACTATATCTG 58 104127658 104127678 CTAGATCAGCCAAGAACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.3 ENSRNOG00000053319 ENSRNOT00000082057 2 1 1 65 3 153521616 153521638 CAATACAGTACCGTACAGTACAG 59 153521661 153521681 GTATGGTACTGCACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004025.1 ENSRNOG00000048533 ENSRNOT00000074828 3 1 1 60 1 122701288 122701306 AGCTCTAAGCTGGATCCAG 59 122701246 122701264 CCTTCTCTATTGGGCAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061462.1 ENSRNOG00000056316 ENSRNOT00000083740 2 1 1 81 4 126509356 126509375 ATTATCATGGGTTTCCTCCC 57 126509419 126509439 CCTTGAGACCAGAAACCAG 58 Novel Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051,ENSRNOT00000090573 3 2 2 81 15 36878956 36879184 CTCATTGTACACAGGCATCC 59 36879226 36879246 TTCTGAAGCTCTGTAGTTGAC 58 Novel Rattus norvegicus 81 AABR07006105.1 ENSRNOG00000052685 ENSRNOT00000080189 3 1 1 60 1 220355089 220355107 TTTGCTCCCAGATGTTCCA 59 220355131 220355149 GAGAGCTGAGACAGAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055511 ENSRNOT00000088008 1 1 1 60 14 60986955 60986974 TTTCTTGTAGGAACGCAGAG 58 60986914 60986933 GTGGTACATTGCTGAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060481 ENSRNOT00000083805 2 1 1 60 1 116978574 116978594 CAACAGAAAGTCAAGAACAGG 58 116978534 116978554 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044193 ENSRNOT00000069460 1 1 1 60 14 66685020 66685039 AGAGAACAGGACCAAGACAG 59 66684979 66684997 CCAACCAAGTACCAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000053726 ENSRNOT00000078749 1 1 1 62 1 194926724 194926742 AACATTGCTTGGAAAGCAG 57 194926680 194926698 CAGTCACGATGATAGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076888 3 1 2 84 13 77800240 77818849 ACACATCCTTAGTGCTCCC 59 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel Rattus norvegicus 81 AABR07051689.1 ENSRNOG00000059910 ENSRNOT00000086557 3 1 1 60 3 19366542 19366560 CAAATCGCTTCAGTGGCAG 60 19366583 19366602 TCCATGGTGTTGATTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062599.2 ENSRNOG00000050557 ENSRNOT00000074530 1 1 1 60 4 183933809 183933832 CTCAATTAGTGATCAAAGGGAGAG 59 183933772 183933790 ACTACTAGCCCAGGAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061810 ENSRNOT00000086013 3 1 1 61 4 156751797 156751816 GAGATGCTATGACTTCGCTC 58 156751755 156751775 TCATGGGTACAAGTCATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123251.1 ENSRNOG00000039721 ENSRNOT00000060915 1 1 1 60 4 15698008 15698029 GAAAGAACACATGGAAACAACC 59 15697967 15697985 ATCTACGGCTCCTTGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000060659 ENSRNOT00000092080 2 1 1 60 10 74764120 74764138 GCTTTGAGTGGCAGTATCG 59 74764160 74764180 TCAATTAGCAATAATCGCGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056,ENSRNOT00000071395 3 2 2 99 5 77314735 77314756 ATCTGAGTTCAGACATCAAGGA 59 77314488 77314675 AGACAGCGATCAGTCTTGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060533 ENSRNOT00000086638 1 1 1 60 14 27392160 27392182 GTAAGTGTCATAGAAGACAGAGG 58 27392200 27392220 TTGATAGCTCAGAACACTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014301.1 ENSRNOG00000047391 ENSRNOT00000071282 3 1 1 60 14 8065779 8065799 TCTGGATAGAATCCTCTTCCC 58 8065739 8065757 CTGTCTGAGAGTGCCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hhipl2 ENSRNOG00000056400 ENSRNOT00000077166 1 1 1 80 13 101823254 101824625 CTTCCTTGGACGACATTCTG 59 101824667 101824686 CACGGTAGACATAACCTCCA 59 Novel Rattus norvegicus 81 AC093965.2 ENSRNOG00000056321 ENSRNOT00000089960 1 1 1 80 10 40373858 40373881 AGCTTCTTCAAGAGATTTCCTG 59 40373799 40373818 ATCTCCCATCCTCCATATGG 58 Novel Rattus norvegicus 81 RGD1305207 ENSRNOG00000008242 ENSRNOT00000010881 2 1 1 81 7 143099697 143099717 AGACTCTGAACAGACTCAACC 60 143099760 143101303 TGTAGCTCACATGGCTGAC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058811 ENSRNOT00000080131 1 1 1 60 17 70657696 70657716 ACGATACAGAGATTAGCATGG 58 70657736 70657756 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057246 ENSRNOT00000084048 2 1 1 60 1 257148173 257148191 CAAGCAAGCTCTCAATGCT 59 257148131 257148151 TAGGTTAGAGGCTCTATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044699 ENSRNOT00000069966 3 1 1 60 17 25470960 25470979 CTCTGAACTTGCCTACTCTC 58 25470919 25470937 TACTAACCTGGTCCAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0449.2 ENSRNOG00000051316 ENSRNOT00000076753 3 1 1 60 14 45025522 45025540 CAAGAGAAGTGGTGGAGGG 60 45025561 45025582 TTAATGCTGTCTGGGTAATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027519.1 ENSRNOG00000061059 ENSRNOT00000089878 2 1 1 81 17 35129269 35129944 TATATTTGAAGGTGCCCTTGG 58 35129208 35129227 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060028 ENSRNOT00000078604 1 1 1 60 2 177737286 177737304 CAGGTGCATCAGTAAGTGG 58 177737328 177737346 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052892 ENSRNOT00000079496 3 1 1 78 2 186583601 186583619 TCACATGTGCGTCAGTAGG 60 186583541 186583559 CATTCAGATGTTCACGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059290 ENSRNOT00000087224 1 1 1 60 2 186951611 186951629 GTGTCAGTAGGTGGCAGAG 60 186951569 186951589 GATGTTCACAGACCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059573 ENSRNOT00000088271 1 1 1 60 2 173210281 173210299 ATAGGCTATGCAAGTGTGG 57 173210320 173210341 GGTCTTTCTTCTGTACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061204 ENSRNOT00000079400 1 1 1 92 14 21558060 21558079 CAATGAGGTTTATCCGAGGG 58 21557987 21558005 GCTGTGTAAGGTAGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062912.1 ENSRNOG00000040076 ENSRNOT00000061631 2 1 1 61 6 14350373 14350393 AAACAATCCGAAACATAGCCG 60 14350417 14350435 CTGCCTTTCTGGACAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA8 ENSRNOG00000053279 ENSRNOT00000079529 1 1 1 68 1 251889297 251889315 AGTTCTTTCCTGTTGGGTG 58 251889347 251889365 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053279 ENSRNOT00000079529 3 1 1 69 1 251889297 251889315 AGTTCTTTCCTGTTGGGTG 58 251889348 251889366 CAAGAAACCAACGATGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061052.1 ENSRNOG00000056290 ENSRNOT00000086827 2 1 1 60 4 103257951 103257969 TCTGGAATTCCATCGAGGT 58 103257909 103257929 TGATGGTGAGAGTGAAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.1 ENSRNOG00000052420 ENSRNOT00000087848 2 1 1 250 12 2589830 2589848 GAATCCGAATGGTTCAGCT 58 2590062 2590081 TTGATCCACCCTCTTACCC 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000054369 ENSRNOT00000081139 2 1 1 64 2 139869794 139869816 GAGAATCTATGTCTACACCAGTG 58 139869752 139869776 GCGTTAGGCTACTAATTATTACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000060705 ENSRNOT00000090931 2 1 1 62 1 213992505 213992523 CCTAATCCCTGCTGGTCAG 60 213992549 213992567 TCTAGGATGCTCTGGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000058808 ENSRNOT00000077244 1 1 1 63 1 1115905 1115923 TTTGCTGTGGACATGACCA 60 1115949 1115968 GCTAGACAAGTAGCATCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055017 ENSRNOT00000087281 2 1 1 60 1 143658353 143658371 ATGTAAGTACCAGGCTCCC 59 143658311 143658331 TTGTGTTCCTGATCCTGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053785 ENSRNOT00000085977 2 1 1 60 1 243119385 243119403 GTATCTTTGGGCCAACCAG 59 243119343 243119361 AGGAATGTGCTCTTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126572.3 ENSRNOG00000056197 ENSRNOT00000082327 1 1 1 71 12 13284068 13284086 ATTTCTCAAACTCCCGTCC 58 13284011 13284030 TGATCACAACAAGCAAACAC 58 Novel DesignNoJunction Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 2 2 2 60 5 151395728 151395746 CACTGTCTACTGCCTCCTG 60 151395686 151395706 CAGGGTAAGGTAGGTGTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056535 ENSRNOT00000090084 1 1 1 60 3 123241707 123241727 GAAACGACACAGATACTAGCA 58 123241749 123241767 ACGCTTCATGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118350.1 ENSRNOG00000036784 ENSRNOT00000055170 1 1 1 60 1 172719118 172719137 ATGCAGTGAATCCAGATGAC 58 172719077 172719096 TCTGAAGACTCCTCCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110306.1 ENSRNOG00000053603 ENSRNOT00000084656 2 1 1 84 7 139784345 139784364 CGATTCAGTGCAGCAAGAG 59 139782690 139782708 GAACTCAGTCACTGTGCTG 59 Novel Rattus norvegicus 81 AC123185.1 ENSRNOG00000052414 ENSRNOT00000077638 2 1 1 77 15 108924513 108924532 ATTTGCTTTCTACAGTCGCC 59 108924574 108924592 GAAGTGAGTCCGACCATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047771.1 ENSRNOG00000061900 ENSRNOT00000083099 3 1 1 80 5 46752102 46752125 AGATTTCACCTCACATGCGA 60 46752041 46752061 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844,ENSRNOT00000059261 2 2 2 60 13 78987055 78987074 GATGAAATGGACGAGACACC 59 78985220 78985239 AGCATGCTTCTCTAAAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0839.3 ENSRNOG00000038786 ENSRNOT00000075844,ENSRNOT00000059261 3 2 2 60 13 78987055 78987073 ATGAAATGGACGAGACACC 58 78985219 78985239 TAGCATGCTTCTCTAAAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028568.2 ENSRNOG00000058428 ENSRNOT00000085781 1 1 1 80 17 75207300 75207319 CAAGTCAAGTGTGCAGAGTC 59 75207361 75207382 ATAGCCTGTTTGACATGTGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054621 ENSRNOT00000089046 2 1 1 61 6 70169550 70169571 CATGTCTTTCAGTATGTGACAC 58 70169510 70169533 CATAGGTCAGAACACTTAGTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053966 ENSRNOT00000083455 1 1 1 60 1 118905043 118905062 ACACATGTGTCAATAGGTGC 59 118905082 118905103 GGTCAGAATACTGATCAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064048.1 ENSRNOG00000050810 ENSRNOT00000073963 1 1 1 81 6 62336616 62336635 TCCCTGAAAGAATTCCAGGA 58 62336810 62336829 CGTGTTCTTTCTTGATTGCT 57 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000051936 ENSRNOT00000081868 2 1 1 60 2 171006102 171006124 GGAAGTAGGAGTTGGAATAGGAG 60 171006064 171006082 CCTGGAGGTACTGTGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047744.1 ENSRNOG00000057999 ENSRNOT00000078109 1 1 1 60 5 45560759 45560778 CAACAATGGAGGAGTGTTCC 59 45560800 45560821 AAATAGGTGACAGCAAATGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009221.1 ENSRNOG00000049504 ENSRNOT00000073391 1 1 1 80 2 89259193 89259215 AGATTTCACCTCACATGCG 58 89259258 89259277 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07048957.1 ENSRNOG00000048415 ENSRNOT00000075294 1 1 1 60 5 98683918 98683938 CGAGGACTACAAGGTATACGG 60 98683878 98683898 CACCACCATGACAAATTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048957.1 ENSRNOG00000048415 ENSRNOT00000075294 2 1 1 60 5 98684076 98684095 ATTACCCTCTGTACATCCGA 58 98684035 98684054 ACCATGTAGTGGAACTTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059887 ENSRNOT00000087478 3 1 1 60 1 265925694 265925716 GATACAGAGAAGATTAGCATGGC 59 265925656 265925674 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015080.2 ENSRNOG00000059586 ENSRNOT00000079916 1 1 1 60 14 46653359 46653377 AGAGGGTGTAAATCTCGCG 60 46653401 46653419 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061333.1 ENSRNOG00000052508 ENSRNOT00000079243 1 1 1 60 4 116912804 116912822 CAGTTTCTGGGCTGAAGTC 59 116912843 116912864 ACTGCAGAAGTTGAATTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028414.1 ENSRNOG00000049178 ENSRNOT00000073676 3 1 1 80 17 68389118 68389141 AGATTTCACCTCACATGCGA 60 68389182 68389202 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059457 ENSRNOT00000080661 2 1 1 62 5 150492365 150492383 CATAGCCATGGGATCTCCA 59 150492321 150492339 ATACCTGGGCTGTCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054792 ENSRNOT00000082490 2 1 1 61 1 116729372 116729393 CAACAGAAAGTCTAGAACAGGA 58 116729332 116729353 GATAAGCATGGATCAATTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051709 ENSRNOT00000085571 1 1 1 60 3 54140901 54140924 GTGTAGTATCTAAGTACATGGAGC 59 54140942 54140961 TTCAATCTCCTGCTCATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056403 ENSRNOT00000085602 3 1 1 61 5 111649890 111649913 ATACAGAGAAGATTAGCCTGATCC 60 111649852 111649873 ACGAAATGCTTCATGAAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059228 ENSRNOT00000088862 1 1 1 60 5 118496274 118496292 GGAACGGTACAGAGACTCG 60 118496232 118496250 GATGCTTCATGGATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA1 ENSRNOG00000057829 ENSRNOT00000087842 1 1 1 60 5 151024603 151024622 AGCACTTGATACTAACCGAG 57 151024562 151024583 CAACATATCCAAGCCTTTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000061593 ENSRNOT00000081154 3 1 1 60 1 58335063 58335085 GAGTTATAGGATAAAGGGCTGAC 58 58335103 58335123 TTTCTTCCAAGTTGCTACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141172.1 ENSRNOG00000061735 ENSRNOT00000083818 1 1 1 80 17 70655979 70655997 CTGGACCACAATGCAAACC 60 70655915 70655937 TGAAGTCATCAGCACATTTGG 59 Novel Rattus norvegicus 81 Rn60_9_0429.1 ENSRNOG00000051277 ENSRNOT00000076303 1 1 1 100 9 43139398 43139416 TACTCTTGCAGCTTGGGAG 59 43145293 43145734 AGTCTCCCAAGATGATCCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054503 ENSRNOT00000078234 2 1 1 63 14 104467084 104467102 GAAGACGCAGAGATCAGCA 60 104467039 104467060 CTACATGGTATGCTTCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053637 ENSRNOT00000089785 3 1 1 60 12 12727305 12727324 AAACCTACCCTGTGTACACC 59 12727346 12727365 ACCCATTCACAATACAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060873 ENSRNOT00000083377 3 1 1 60 12 37657024 37657045 CCAAACAAGCTCTCAAGAAGTC 60 37657063 37657084 CTAGTCAAGAAGTCATTTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040652 ENSRNOT00000062405 2 1 1 60 12 39942387 39942406 TCAATCTTGTCTGATCTGGG 57 39942346 39942365 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055865 ENSRNOT00000081814 3 1 1 61 12 37915392 37915414 GAACGATACAGAGATTAGCATGG 59 37915353 37915371 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055645 ENSRNOT00000086593 2 1 1 60 6 87391971 87391989 AGGTGCTAGAAAGGAGGGA 60 87391929 87391948 CTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057537 ENSRNOT00000092149 3 1 1 61 14 86882094 86882112 CAAACTCTGCTGCTCATGG 59 86882051 86882072 AACCAAACTTATCCCTAGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055376 ENSRNOT00000087776 2 1 1 60 12 37762989 37763008 AAGCTCTCACAAGCAATTCC 59 37762948 37762967 ACATGGCATTGCTCTTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043823.1 ENSRNOG00000032799 ENSRNOT00000051721 1 1 1 66 19 42430543 42430562 AAACTGTTTGTCCGTTGCC 60 42430592 42430610 ATACAAGTGCCTTCTGCTG 58 Novel DesignRelaxed Rattus norvegicus 81 Rn60_2_2049.3 ENSRNOG00000054907 ENSRNOT00000089421 1 1 1 60 2 185438190 185438208 TGACTGCTCTTTGCATAGG 58 185438148 185438169 CTCATCCTTCAGGTATACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059151 ENSRNOT00000086556 1 1 1 60 6 124644924 124644948 GGGAAGGATACAAAGATTAACATGG 60 124644888 124644908 ACACTTCACAAATTGCCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057828 ENSRNOT00000083305 2 1 1 60 6 59266311 59266329 AAGCATCAGTAGGTGGCAG 60 59266352 59266371 CACAGATCAGAACACAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056841 ENSRNOT00000081381 3 1 1 60 6 110820497 110820515 GTTGTGACATCTGTCACCC 59 110820539 110820557 CTAGTCAGCCAGATCAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055752 ENSRNOT00000091477 2 1 1 60 14 12686316 12686335 CTCTGTCACATGTGCATCAG 59 12686275 12686295 ACATTGAGCTTAGATGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054464 ENSRNOT00000081664 2 1 1 62 5 52582801 52582820 CAGAGAAATTAGCATGGCCC 59 52582845 52582863 CAGCTAATGTCCTGTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049048.1 ENSRNOG00000054330 ENSRNOT00000085610 1 1 1 92 5 101640205 101640225 ACTTTACAGTTAAAGGCAGGG 58 101640278 101640298 ATTTACACAGAAGCTCCAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060427 ENSRNOT00000080298 3 1 1 60 12 49964977 49964999 GATACAGAGAAGATTAGCATGGC 59 49965018 49965037 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054059 ENSRNOT00000079461 3 1 1 64 1 236005225 236005246 TGGAATAACACAGAGAAGATCG 58 236005268 236005289 CCTGCTCATGAATTTGTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000054326 ENSRNOT00000081120 3 1 1 60 1 100224883 100224902 ATGTATAGCACTGGGCTCTG 59 100224925 100224943 ATGTCAAAGGTCCTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056709 ENSRNOT00000090484 2 1 1 61 3 155054497 155054515 GGGCGGTTATTGCTAACTG 59 155054454 155054474 CTGTATTTCAAGCCGTCATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009052.1 ENSRNOG00000049844 ENSRNOT00000072419 2 1 1 68 2 85818924 85818942 TGAGATCCAGGTGTAAGGC 59 85818974 85818992 TGGTATCACCCACAAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067976.1 ENSRNOG00000057942 ENSRNOT00000077342 2 1 1 80 9 74960336 74960354 GCAGGTAAGAAGTCCTGCA 60 74960395 74960432 CACCATGATACACAGAGATTCG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055478 ENSRNOT00000086437 3 1 1 60 2 169249234 169249254 TAATCAGTCTTTGGTCAAGGG 58 169249194 169249214 TGTTTAGAAGTTCTAGCAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006591.1 ENSRNOG00000056301 ENSRNOT00000084204 1 1 1 67 1 241771599 241771617 AGACATCTCTGGCTGTCAC 59 241771650 241771668 GTTTCAGAGTGTGGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055108 ENSRNOT00000086981 2 1 1 60 1 109182498 109182520 CGATACAGAGAAGATTAGCATGG 59 109182460 109182478 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000058420 ENSRNOT00000091110 3 1 1 80 1 214748496 214748516 ATGCTGCACCATTTGTCAG 59 214748559 214748578 GGATAGAGTTGGTGTACGGG 60 Novel Rattus norvegicus 81 AABR07047844.1 ENSRNOG00000047509 ENSRNOT00000073903 1 1 1 88 5 50372917 50372935 CGGTCGAGATCAAGAAAGG 58 50372841 50372863 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AC109096.1 ENSRNOG00000046560 ENSRNOT00000071617 2 1 1 118 1 220836244 220836262 CTGCTTCCTGGACTCAGAG 60 220836144 220836162 CTAGCTTCTGCCAACAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056677 ENSRNOT00000079286 3 1 1 60 5 90533589 90533609 GTATAGCTGCTGTGTCATGTG 59 90533628 90533649 GCATTGACATAGTCTCTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056423 ENSRNOT00000083889 1 1 1 67 5 69072371 69072395 CTCCTGTCATTAGAACAATACAGAG 59 69072420 69072438 TTCATGAATTTGCAGGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056423 ENSRNOT00000083889 2 1 1 68 5 69072370 69072393 GCTCCTGTCATTAGAACAATACAG 60 69072420 69072438 TTCATGAATTTGCAGGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035641.2 ENSRNOG00000059625 ENSRNOT00000090081 1 1 1 80 12 20669031 20671354 TACACATGCTCTCAGTACTACC 59 20671395 20671413 CTTATGTCCTCCAGGCCAG 60 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000051787 ENSRNOT00000078042 3 1 1 61 1 56880589 56880610 TGACAACCGAATTCAAGAACAG 60 56880549 56880569 TCAGTGTAGTCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060628.1 ENSRNOG00000051748 ENSRNOT00000090943 1 1 1 60 4 87293944 87293962 GGAAGCTCTTCACTGGAGG 60 87293985 87294004 AAATGGCTCCTCAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044940 ENSRNOT00000070207 1 1 1 60 1 79664470 79664489 GGCCATACAACCATGAAAGG 59 79664429 79664449 AACCAATCATGCTTAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030841.1 ENSRNOG00000057615 ENSRNOT00000082089 1 1 1 60 10 106022244 106022265 AATTTGCAGTAACAGGTGTGAG 60 106022283 106022304 GTTTGCAGTATCATACATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055907 ENSRNOT00000091902 2 1 1 60 3 20431052 20431076 GTAACAATACAGAGAACTAGCATGG 60 20431016 20431036 TGCTTCATGAGTCTATGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058635 ENSRNOT00000086372 2 1 1 60 3 165667602 165667620 GATCCTAAAGGCTGCAGGT 60 165667560 165667578 CTTCTCTGCCACCTACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000222.1 ENSRNOG00000014431 ENSRNOT00000019345 3 1 1 60 1 5238793 5238811 TAGGAAGGTAGCTGATGGT 57 5238751 5238769 CTTACTGGCAATGTTCCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.2 ENSRNOG00000059506 ENSRNOT00000084156 3 1 1 80 X 128182887 128182910 AGATTTCACCTCACATGCGA 60 128182951 128182971 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07028795.1 ENSRNOG00000061514 ENSRNOT00000078827 3 1 1 60 17 86657386 86657405 GATAAAGGTGGACAACCACC 59 86655449 86655469 CTTAAACTTGAAATGGCTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC098750.6 ENSRNOG00000058618 ENSRNOT00000081189 1 1 1 80 2 188695885 188695903 TGTTTGGCAGCTATGTCAG 58 188695947 188696692 AGGTGATCCTTTCCTGCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053305 ENSRNOT00000083473 3 1 1 63 1 254469983 254470002 ACGAGGCAGAGAAGATTAGC 60 254469939 254469959 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071898.1 ENSRNOG00000056095 ENSRNOT00000090687 1 1 1 166 1 89551354 89551377 TAAGTCTCCACTTCTTACCCTG 59 89551209 89551227 TCCACTGCAGAACTGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059972 ENSRNOT00000086139 2 1 1 60 6 52789512 52789531 CTGTGTCAAACATGCCTCAC 60 52789471 52789490 ACACTGAGCATAGAAATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055208 ENSRNOT00000077260 2 1 1 60 6 43246857 43246880 GATACAGAGAAGATTAGCATGACC 59 43246899 43246917 GAACGCTTCACAAACTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053170 ENSRNOT00000082948 1 1 1 64 9 24194569 24194587 ATTGTTCTCCTGGTGTGCT 59 24194523 24194543 GCACAAATAATGCACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045211 ENSRNOT00000070478 2 1 1 60 5 115698805 115698827 CTTAGAAGCTAAGCAAGATCAGG 59 115698846 115698865 GGAGCTATCACTTGTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059917 ENSRNOT00000089815 2 1 1 60 5 173170953 173170971 TGGAGATTAGCATGGTCCC 59 173170911 173170930 AAACATGGAGTGGTTCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054906 ENSRNOT00000091247 3 1 1 60 1 5740173 5740192 CTGTGTCACATGTGCATCAG 60 5740212 5740233 ACACTAAGTGAAGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052084.1 ENSRNOG00000048601 ENSRNOT00000075631 2 1 1 64 3 35661220 35661238 TCTGCACCTTCGAAGATGG 60 35661174 35661193 TATCGTGCTTTCTTTCCCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055576 ENSRNOT00000079467 3 1 1 60 3 121401861 121401881 CACATGCATGTCAATAGGTGG 60 121401903 121401921 AGGTTAGAACGCAGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD28 ENSRNOG00000060156 ENSRNOT00000086925 1 1 1 60 1 224922537 224922558 TTGATACACTGATAACTCCGTG 58 224922577 224922597 CCATCAGAACTCTAACATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061908 ENSRNOT00000088275 1 1 1 60 1 190338271 190338290 TTCGGTCAAGGGTATACGAG 59 190338313 190338331 TCGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.4 ENSRNOG00000052896 ENSRNOT00000077849 3 1 1 80 15 31469997 31470192 GATTTGCTGGGTGAAAGGA 58 31470235 31470254 CTCAGAACAGAACTGGTTCC 58 Novel Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 3 1 1 62 1 142027778 142027798 CTTCCTAAGGCTGCTACCT 59 142027824 142027842 TGCTGGCTCAGTAGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056634 ENSRNOT00000084542 2 1 1 60 14 33240237 33240259 GATACAGAGAAGATTAGCATGGC 59 33240199 33240217 GGAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056056 ENSRNOT00000079716 3 1 1 61 14 52980941 52980964 CGATACAGAGATTATTAGCATGGC 60 52980903 52980921 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056459 ENSRNOT00000081853 3 1 1 66 14 86398225 86398244 TACTAGCACTGGAAGCACAC 60 86398178 86398196 CATGAATTTGCACGTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061131 ENSRNOT00000085388 1 1 1 60 13 99460387 99460406 AAAGCTGGAACGATACAGAG 58 99460429 99460447 CGAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000061144 ENSRNOT00000083541 1 1 1 60 14 36664777 36664796 AAGGGTAAAGGAAGTCTCCA 58 36664736 36664754 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060805 ENSRNOT00000091199 3 1 1 86 5 81732281 81732301 CTGCACTTATTTCAGAAGCAG 58 81732215 81732233 GAATTTGTGCCATCCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000054827 ENSRNOT00000086749 2 1 1 60 7 109924551 109924570 CCGATCTCATCTGATCTCGG 60 109924510 109924530 CTCCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD24 ENSRNOG00000060649 ENSRNOT00000091054 3 1 1 60 13 78853457 78853476 TTGCTACTCTTGACAGTTGG 58 78853495 78853517 GCCTCAGTTATGATTAATGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061022.2 ENSRNOG00000061699 ENSRNOT00000085205 1 1 1 60 4 102876266 102876287 AGCTTGGAGTCTGAAGATATGG 60 102876305 102876326 TGGGAGGATACTCATTATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0699.2 ENSRNOG00000051079 ENSRNOT00000076509 1 1 1 60 10 70222883 70222907 GCTCAATCACTATTAGTTCTTCTGG 60 70222847 70222866 TCCTAGTGCCCTGATTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054666 ENSRNOT00000090195 2 1 1 62 5 55823644 55823662 ATATACGAGTAGCTGCGCT 59 55823600 55823621 CCTACAATGGACATTAAGAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025048.2 ENSRNOG00000057966 ENSRNOT00000079010 2 1 1 86 16 26499896 26518823 GAATGAAGATGAGGACCTCC 58 26518872 26518890 CTGTGTTCTTCCTCTGAGC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057302 ENSRNOT00000079051 1 1 1 60 1 4731983 4732002 CTCAGTAGGTGACAAACAGG 58 4732024 4732043 ATGTTCATCTGTTGATCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000076115 2 1 2 91 X 73425474 73426374 TGTGCCTGAAGACATTGGT 60 73426429 73426447 TACTACAGCAACAGTGGCA 59 Novel Rattus norvegicus 81 AABR07015320.1 ENSRNOG00000058176 ENSRNOT00000083767 3 1 1 106 14 51960285 51960307 TAAGAGGCTTTCTCTACCAAGAG 59 51960373 51960418 TAACCTACCGCCTGTTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059104 ENSRNOT00000081887 2 1 1 60 1 104456839 104456858 AGACTGAGTCAGCTGATCTG 59 104456880 104456899 CCCATGCAACAATAAGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052768.1 ENSRNOG00000009952 ENSRNOT00000013190 1 1 1 87 3 74585590 74585608 TGCTTCCTATACTGGTGGA 57 74585656 74585681 GACGTCTAATTTCATTCCACAG 58 Novel Rattus norvegicus 81 AABR07054845.1 ENSRNOG00000049107 ENSRNOT00000070970 2 1 1 77 3 171784406 171784424 CTTCTTCGTCCAGGTCAGG 60 171784347 171784366 CTTCAAACTCCGAAGACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044576 ENSRNOT00000069843 2 1 1 61 1 129014456 129014474 TAAACATGCCCAGTCTCGT 59 129014413 129014431 CACATACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053909 ENSRNOT00000087707 3 1 1 60 20 37370376 37370395 TAGAACCTCCAAACAAGCTC 58 37370415 37370436 CATGTGATCTCTTCAGTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000054191 ENSRNOT00000089688 2 1 1 64 1 228362701 228362719 TTTGCTGTGGACATGACCA 60 228362744 228362765 TGCTAGTCAAGTAGCATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028776.1 ENSRNOG00000056540 ENSRNOT00000085236 2 1 1 80 17 85749443 85749466 GAACTGCCTAACTTCCTAACCT 60 85749501 85749525 GGAATAACACTCTAGTATTCGACAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056693 ENSRNOT00000085025 1 1 1 60 1 248174114 248174134 GTACTTTGATCATCACGGTGG 59 248174155 248174174 AGACTTGGAGTACAATGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.1 ENSRNOG00000051739 ENSRNOT00000082031 3 1 1 80 4 102489956 102490091 GGACATCAGGTATACAGTGTG 58 102490133 102490151 TGGAAACACTTTCTCCAGG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061817 ENSRNOT00000086901 2 1 1 60 13 94121992 94122012 TGTCACATGTACAGCTGTAGG 60 94122034 94122052 AGAGCACTGAGCATACACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057544 ENSRNOT00000082436 1 1 1 60 13 9405630 9405649 TTTGAACCTTTCACAGTGCC 59 9405671 9405690 GAGGCCATACAATGGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052213 ENSRNOT00000078295 3 1 1 60 6 56740928 56740949 CGAAGAGAAGAGAAACAAAGTC 58 56740967 56740988 TTGTTAGGCTACCAATCATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056270 ENSRNOT00000087440 2 1 1 60 3 134461517 134461537 GCAATACAGAGAAGACTAGCA 58 134461477 134461496 ATGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057428 ENSRNOT00000087881 2 1 1 60 5 128142903 128142921 GTGGTCTCTTTCAACAGCA 58 128142861 128142879 GCCATGCTAATCTTCCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000083333,ENSRNOT00000085393 1 2 4 61 X 73460260 73460279 GAAAGACGGGAGTACTTCAG 58 73460868 73460889 CATCTTGAGTTAATGGAGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA42 ENSRNOG00000055313 ENSRNOT00000082213 1 1 1 60 3 58503770 58503790 GGTGAATACTCTCATAGTGCC 58 58503812 58503830 TGGAGGCAATGGTTAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034751.1 ENSRNOG00000060656 ENSRNOT00000079948 2 1 1 82 11 87484241 87485767 CTTCGGGTTCTGATTATTTCCA 59 87484180 87484198 GATTTGTTGCTCCGGACAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054832 ENSRNOT00000083927 1 1 1 60 5 145168646 145168665 GGGTAACGACACAGATTAGC 59 145168605 145168625 CAGTTCATGAATTTGCATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060744 ENSRNOT00000086811 1 1 1 60 4 125904894 125904913 AGACATTCTGACAGCTCAGG 60 125904930 125904954 CCTTCTAAGAAAGATACTAACAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000059721 ENSRNOT00000090263 1 1 1 64 4 173331629 173331647 AACCAGAGTGATTCCCAGG 59 173331583 173331601 TCTGCATCTGTCACTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028568.1 ENSRNOG00000053515 ENSRNOT00000085840 2 1 1 60 17 75190915 75190935 CCTATAGCTTTGGCAGTTGAG 59 75190955 75190975 TGGAAGTTGAACTTAGGTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057213 ENSRNOT00000081782 3 1 1 60 5 73513630 73513650 TTTCGATTTATGGCAGACCTG 59 73513590 73513609 TAGCAAGGGTTCTAGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021734.2 ENSRNOG00000059957 ENSRNOT00000079363 1 1 1 60 13 88556912 88556931 CACATGGGAGTTTCTCAGAC 58 88556954 88556972 TCCATCCTGTTTCAGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 1 1 1 62 5 124275985 124276008 CAATCGCCCAGTGAAATCG 60 124276034 124276052 TATCTGCCATTGGTTGCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049326.2 ENSRNOG00000054188 ENSRNOT00000082201 2 1 1 81 5 117442683 117442701 CATGGCAGGGAGTCTACAG 60 117442617 117442637 TGTGTATCCATTTCTGCCCT 59 Novel Rattus norvegicus 81 AC133265.1 ENSRNOG00000059203 ENSRNOT00000084514 1 1 1 98 8 46694494 46694554 GCGTCTCCAGTCTTTATTCTC 59 46694416 46694435 GGTGATTTCCCATCTTTGGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000040878 ENSRNOT00000062631 1 1 1 62 14 60192210 60192228 TGTTCAAGCCTGACCTCAG 60 60192166 60192184 AGTCTCCCATCTGAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054253 ENSRNOT00000086818 2 1 1 60 3 119097363 119097386 CTCATCTATTACAGTGTGGATGGA 60 119097326 119097345 ACTTATGCCAAGTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057388 ENSRNOT00000082147 3 1 1 60 14 14198172 14198191 ATGAGGTTTATCTGAGGCAC 57 14198131 14198152 ACCTATCCATTTGGGAATATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051508 ENSRNOT00000078401 1 1 1 60 5 41320715 41320737 GAACGATACAGAGAAGATTAGCC 59 41320756 41320775 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055462 ENSRNOT00000078694 1 1 1 60 10 65247466 65247485 GGAAGATAGCGTGACTATGG 58 65247425 65247445 CCAATGTTAGGATCAATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051583 ENSRNOT00000086121 1 1 1 61 13 102768749 102768767 GCTGCAATATCTGTCACCC 59 102768706 102768724 AGGAAGAAAGCCAGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005028.1 ENSRNOG00000056820 ENSRNOT00000080423 1 1 1 80 1 175684032 175684051 GTTCAGCGTCAAACTGAAGG 60 175683970 175683991 AGCTGAATGAAAGGAACACTG 59 Novel Rattus norvegicus 81 AABR07017902.1 ENSRNOG00000061828 ENSRNOT00000079158 2 1 1 108 15 32487766 32487934 ATCTGAACTTGGTGAGTGG 57 32488004 32488024 GCTGTGTTTGTATAAGTGCAG 58 Novel Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000082773,ENSRNOT00000071700 2 2 4 80 9 81647076 81649319 GCTGTGCTATTGTACCTATAAATCC 60 81649356 81649375 TCCACGATGAACATTTCAGC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058806 ENSRNOT00000079793 3 1 1 60 3 53529496 53529518 CGGTATGTCTACTATACTCAGTG 58 53529536 53529556 ATTAGCCTACTCACCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057648 ENSRNOT00000078829 2 1 1 62 9 120318631 120318655 CAATACAGAGAAGATTATCATGGCC 60 120318673 120318693 GGAATGCTTCCAGAATTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035323 ENSRNOT00000053446 2 1 1 60 3 162114744 162114762 TGATCTCGTCTGATCTCGG 58 162114784 162114804 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056518 ENSRNOT00000091559 2 1 1 60 3 154867009 154867027 CTGAAAGCCATTTCCCGTG 60 154867050 154867069 TGAAAGCACCAGCATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049466.1 ENSRNOG00000053013 ENSRNOT00000077106 3 1 1 69 5 122136509 122136527 CAAATAGCAGTTCCGTGCT 59 122136561 122136579 TGGCTTCTACTACAGCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054159 ENSRNOT00000079945 3 1 1 60 15 93623349 93623371 GATACAGAGTAGATTAGCATGGC 59 93623311 93623330 AGGAAGTCTTCACGAATCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057029 ENSRNOT00000082541 1 1 1 60 13 4115242 4115260 AGAGACTTTGACAGCCCAG 59 4115200 4115220 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055397 ENSRNOT00000089969 3 1 1 61 7 30801061 30801082 TTGGAATTAGGAGTTGGAATGG 59 30801101 30801122 GCAATACCAGGTTGATACATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052426 ENSRNOT00000084497 1 1 1 60 7 109352344 109352364 CTAGAACCTCCAAACAAGCTC 59 109352304 109352324 CAAAGATAAACAAAGGTGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051595 ENSRNOT00000091617 3 1 1 60 15 36604885 36604904 ATACACTCACATTGGAACGA 57 36604924 36604945 TGCATGTTATCCTGCTATAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025673.1 ENSRNOG00000052847 ENSRNOT00000073762 1 1 1 80 16 45085905 45085927 AGATTTCACCTCACATGCG 58 45085843 45085862 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07018627.1 ENSRNOG00000038122 ENSRNOT00000058010 2 1 1 60 15 66165743 66165764 AACATCAGATCTTGCCTAAGGA 59 66165783 66165803 TCAAGGTAGAATTTGTCCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052042 ENSRNOT00000084405 2 1 1 60 3 103948394 103948414 GTGATATGGCTGTGACATCTG 59 103948434 103948454 ATCTGTCTAGCCAAATCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112001.1 ENSRNOG00000057296 ENSRNOT00000083751 3 1 1 80 2 2038268 2038291 AGATTTCACCTCACATGCGA 60 2038332 2038352 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054894 ENSRNOT00000088069 2 1 1 60 19 62201050 62201070 GACGATACAGAGAAGATAGCC 58 62201092 62201110 ATTTGCGCTATGTCATCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059187 ENSRNOT00000091766 2 1 1 60 15 33275492 33275514 CGATACAGAGAAGATTAGCATGG 59 33275454 33275472 AACGCTACACGAATTCGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.2 ENSRNOG00000051136 ENSRNOT00000075905 1 1 1 60 X 115561340 115561360 TCCAGATTCGGAATTACTGGA 59 115560086 115560107 GTATACTCTTTGTTGCATGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_1141.2 ENSRNOG00000051136 ENSRNOT00000075905 2 1 1 60 X 115561339 115561360 TCCAGATTCGGAATTACTGGAG 60 115560086 115560107 GTATACTCTTTGTTGCATGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053426 ENSRNOT00000082155 2 1 1 62 19 17357809 17357827 AGCATGCCTATGTCTACAC 57 17357851 17357871 GGCTACCAATCAATCTTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049201 ENSRNOT00000075520 2 1 1 60 13 34620809 34620828 CAGCTATACCACCCTGAAGG 60 34620768 34620788 ACCTGCCTCAATTAACTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000056759 ENSRNOT00000081439 2 1 1 77 15 58025902 58025920 TTTCATGGTGGGAGCTAGC 60 58025843 58025865 AGGTTACTAGTTGTAAGTGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058886.1 ENSRNOG00000055307 ENSRNOT00000083250 2 1 1 83 7 141675484 141675502 AATCAGGGAACAGAGACGC 60 141675548 141676403 TATTCAGGTTGCTCCTTCCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000053714 ENSRNOT00000078852 2 1 1 61 15 19143450 19143470 GACGACCTTCCCTGAATAGAG 60 19143492 19143511 AGCACAGCTACTCGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052317 ENSRNOT00000087654 2 1 1 60 15 64346714 64346735 GTCAAGGGTATACAAGTAGCTG 58 64346753 64346774 TACCTTGAGAACTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066532.1 ENSRNOG00000050812 ENSRNOT00000074139 3 1 1 60 9 10900366 10900384 GTTATGAGCCACCATGTGG 59 10900405 10900426 GTTAAGAGCACTTCCAGAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000059492 ENSRNOT00000088689 1 1 1 89 1 60884984 60885543 GTCTCCCTGGGAATGACAC 60 60885596 60885614 TATTGCCTCACTCTCCACG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060504 ENSRNOT00000080592 2 1 1 60 18 48672942 48672964 GGAACGATACAGAGAAGATTAGC 59 48672984 48673002 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018048.2 ENSRNOG00000059279 ENSRNOT00000085358 3 1 1 81 15 37276459 37276478 GACCTGTACAGGATCTTGGG 60 37268182 37268467 CAAAGGGATTCCCATGTATTGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000057974 ENSRNOT00000084253 1 1 1 60 20 2565490 2565509 GTCTACCCATTGATCACCAG 58 2565449 2565469 GGCATACTTAGAGCTAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052072 ENSRNOT00000082018 2 1 1 60 19 14012750 14012768 GTGGCAATGCAGGTATGTC 59 14012789 14012810 GACATAGCCTCACTTCTTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059101 ENSRNOT00000086388 3 1 1 60 4 98855119 98855139 TTACCTGTCAGGGATATACCA 58 98855079 98855098 ATGAATATGCTTAGCCCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051765 ENSRNOT00000090169 3 1 1 60 15 39046985 39047006 GTGTCACATGTGTTTGAGTAGG 60 39046946 39046968 GAATACTGAGTTTAGACCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061873 ENSRNOT00000091692 2 1 1 60 18 11766652 11766671 TTCGGTCAAGGGTATACGAG 59 11766611 11766629 GAGATGGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056234 ENSRNOT00000091233 2 1 1 60 5 123058857 123058875 CGATGAAGAATGCAGCCAG 59 123058898 123058917 TCCATGATCAATGTGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135285.4 ENSRNOG00000060386 ENSRNOT00000077339 2 1 1 60 18 28355452 28355471 GTATTGCATCCCTGAGAGTG 58 28355493 28355512 GTTCGCACCTAGACTAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691301 ENSRNOG00000056993 ENSRNOT00000081909 1 1 1 60 1 230207672 230207690 CCCTACACTATGCCACCAC 60 230207714 230207732 TAGCAGCCTATGACCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057897 ENSRNOT00000085806 2 1 1 60 X 41163564 41163582 CCCTGAGGACATAAGAGCA 59 41163522 41163541 GAGCCTGACAGGTATCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD23 ENSRNOG00000059690 ENSRNOT00000080874 3 1 1 64 1 24306081 24306099 CATTCTGAGGGTAGGGCTG 60 24306126 24306145 CTCAAGCAATGGTCCAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056990 ENSRNOT00000083599 2 1 1 60 1 157687799 157687817 AACAGAAGCAACCTTGGGA 60 157687757 157687775 TCTTCAAGGTCCCTTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057735 ENSRNOT00000086801 1 1 1 70 7 134567406 134567424 GCTTGCTTCAGTAACCCAG 59 134567458 134567476 TATACACCCTTGTGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045261 ENSRNOT00000070528 1 1 1 60 3 149709950 149709968 GTCTTTGACCATTCCACCT 57 149709991 149710010 GTCTGCTTAGCTTCTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 1 1 1 62 4 90089755 90090484 CATGACGTTCTATGTCAGGA 57 90090507 90090527 GATTTATCAGCCCAAACTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC130624.1 ENSRNOG00000046397 ENSRNOT00000073929 1 1 1 60 X 15536949 15536969 GTTTGTTATGTGTTCCTGGGT 59 15536909 15536928 TGAGTTTGAAGCTAGCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.3 ENSRNOG00000057421 ENSRNOT00000081684 3 1 1 107 6 139551786 139551888 ATTTCCAACCTGTGTCCTG 58 139551959 139551977 AGTGAGAACCCAGAGACAG 58 Novel Rattus norvegicus 81 AABR07041532.1 ENSRNOG00000049651 ENSRNOT00000072582 2 1 1 60 X 132506961 132506979 CCTCCTCTTCCTCTTCCTC 58 132506919 132506938 TCAGAGAATTCTGAGGAGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051439.1 ENSRNOG00000049599 ENSRNOT00000072773 2 1 1 60 3 11348214 11348236 TGTTTAGACTACCTGTTCAGGAC 60 11348256 11348274 CAGCCTAACCAATGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120727.1 ENSRNOG00000009609 ENSRNOT00000012762 2 1 1 80 X 1615491 1615512 ATTATCAAGCAGAGGCAGAG 58 1615430 1615449 ATTTGGATCAATGGTTGGCA 59 Novel Rattus norvegicus 81 AABR07065601.2 ENSRNOG00000053458 ENSRNOT00000081560 2 1 1 132 6 136984864 136984883 GTACTTGTCACAGCTGTCAC 59 136984744 136984764 ACAGTCAGCCAGAAGACAG 59 Novel Rattus norvegicus 81 AABR07052071.1 ENSRNOG00000050109 ENSRNOT00000074833 2 1 1 64 3 35019893 35019914 CTCAATTAGTGATCAAGGTGGG 59 35019939 35019957 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052720 ENSRNOT00000085992 2 1 1 60 X 158258547 158258568 AACGATACAGAGATTAGCATGG 58 158258508 158258527 GAACGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Aim1l ENSRNOG00000057957 ENSRNOT00000089849 2 1 1 80 5 152308221 152308241 GATTTGAAAGACTCTCAAGGC 57 152308282 152309509 GTATAACAGCCACAGTCCTG 58 Novel Rattus norvegicus 81 AC135265.1 ENSRNOG00000042387 ENSRNOT00000046606 3 1 1 60 18 70960415 70960435 GGCTTTAATGTGTCAGTACAG 57 70960455 70960475 CATAGATACCGAAGTAGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000087321,ENSRNOT00000079111 3 2 2 61 20 3952654 3952672 ACTCAGTTCCACTTTCCCA 59 3952694 3952715 GCAGATTTGATTACGAATACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060577.1 ENSRNOG00000015328 ENSRNOT00000020546 3 1 1 60 4 81302086 81302104 ACTCCAACTTCAAGAGCAG 57 81302127 81302146 CTCTCCTTAGCAAGCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050489 ENSRNOT00000073598 1 1 1 81 6 142533974 142534075 TAACTGCAGGTGTCCACTC 59 142533911 142533929 GACAACTTCACTGAAGCCC 59 Novel Rattus norvegicus 81 U11 ENSRNOG00000059869 ENSRNOT00000086455 3 1 1 60 6 108403976 108403996 ACATCAAGAGATTTCGGAAGC 59 108404018 108404036 GGACCAATGATCACCAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061830 ENSRNOT00000085740 2 1 1 60 6 128084108 128084126 CATACGTGTGCCAGTAGGT 60 128084066 128084086 ATCAGAATGCTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058360 ENSRNOT00000088631 2 1 1 60 15 13852693 13852711 GGCTGCTGTGTCATATGTG 59 13852651 13852675 GAGTATAGACATAACCTATCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041787.1 ENSRNOG00000041292 ENSRNOT00000063045 1 1 1 60 X 140117791 140117810 TGTCTCTTGTGTTAAGGTGC 58 140117750 140117770 AGGGCAGTAGATTATAAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057767 ENSRNOT00000087261 1 1 1 60 7 31130733 31130754 TAATCTTAGCACGATAGCATGG 58 31130774 31130793 GAACGCTTCATGGATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000051393 ENSRNOT00000080558 1 1 1 76 7 141587032 141587051 CCTGAGTCCTCATAACTGGT 59 141586975 141586993 ATTTACTCAGGCGTTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054010 ENSRNOT00000083717 2 1 1 60 1 131869360 131869382 GGAACGATACAGAGAAGATTAGC 59 131869402 131869420 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043101.1 ENSRNOG00000055046 ENSRNOT00000084965 2 1 1 60 19 21049347 21049366 AGTGTGGAGTTATAAGCCCT 58 21049388 21049407 TTCTGCCATTTCTCTAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061874.1 ENSRNOG00000046940 ENSRNOT00000072408 3 1 1 60 4 150484498 150484516 GTGTTCTCTGATGGACGGT 59 150484538 150484558 TGCAATGCATGTAGGAAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041779.1 ENSRNOG00000043755 ENSRNOT00000069022 1 1 1 60 X 139999285 139999305 TTGAGATTCTGTGCTTCTTGG 59 139999327 139999345 CTCCTGGGAACTTGTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000057109 ENSRNOT00000087653 1 1 1 60 15 79318849 79318867 CTCTCACTGAAGACCAGCA 59 79318807 79318826 GTTCTTTAGGCATCTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055034 ENSRNOT00000084231 1 1 1 60 4 103410326 103410347 GACTTATAGAGTCATTGCAGGT 58 103410287 103410305 TTCTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056821 ENSRNOT00000089330 1 1 1 60 15 8020705 8020723 GCAAGTTGGACATGTTGAC 58 8020663 8020681 AAATGTGGCCAAGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.10 ENSRNOG00000059953 ENSRNOT00000087855 1 1 1 102 6 138908968 138909070 ATTTCCAAGCTGTGTCCTG 58 138908884 138908902 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000018378 1 1 2 80 17 13534917 13536195 CCTCGTGCCTGGATAAGAG 60 13536237 13536257 GGAAACACTTGAGTTCTGCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060234 ENSRNOT00000077987 2 1 1 73 5 164490575 164490593 CTCCAGCAGCACATATCCT 59 164490630 164490648 GCATGTTCTCCTTGTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059107 ENSRNOT00000082032 2 1 1 60 4 53535268 53535287 CTGTGTCTCTTGTGCATCAG 59 53535227 53535248 ATACTGGGCATAGATGTATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061838 ENSRNOT00000085717 3 1 1 68 15 14527532 14527550 CATATGGCTGCTGTGTCAC 59 14527482 14527504 GCTTAGATGTAACCTTTCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055740 ENSRNOT00000087650 2 1 1 60 20 2971782 2971803 ATCTGTCTACACATTGATCACC 58 2971821 2971842 TCCTTAGAGCTAGTCAGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058865 ENSRNOT00000083838 3 1 1 62 15 81606799 81606821 CCTACCACTAGAGTTATTTCAGG 58 81606759 81606780 TTCTGCAACCTACAACTATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055587 ENSRNOT00000090311 1 1 1 60 15 7954189 7954207 GCATCAATGTGGTGACCTC 59 7954231 7954249 CAGTTCACCCTCCTTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061919 ENSRNOT00000090008 3 1 1 60 6 70216463 70216484 ATGGTTGATTCTGATGATCTGG 58 70216502 70216523 GAAGGACAGTAAGGGAGAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071500.1 ENSRNOG00000042061 ENSRNOT00000065507 1 1 1 85 8 118618766 118618784 TTGCCTAAAGAGCAGAGGG 59 118618695 118618719 GCACAGTCTATAGGAGCTGAG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045387 ENSRNOT00000070654 3 1 1 60 20 7231374 7231395 ACGTGATCTCATATGATCTCAG 57 7231335 7231354 ACCCTCCAAGTATGAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059168.2 ENSRNOG00000061080 ENSRNOT00000077289 1 1 1 80 4 6185557 6185576 TGTTACTCCATTAAGGCGTG 58 6185617 6187358 CTATCTTCTCCCGATTGTCTG 58 Novel Rattus norvegicus 81 AABR07002001.1 ENSRNOG00000058538 ENSRNOT00000078512 2 1 1 80 1 63966826 63966845 TCAGAAGTTCACCAACTCAC 58 63966885 63967323 ATTGATGTCAGAGTAACAAGGG 58 Novel Rattus norvegicus 81 AABR07061533.1 ENSRNOG00000048087 ENSRNOT00000075654 1 1 1 60 4 132360805 132360826 TGTATGTCTGTATGTGCATGTG 59 132360847 132360865 TACATGCTCATGCACATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053809 ENSRNOT00000085136 1 1 1 60 5 128628218 128628237 TGGTCCGATACAGAGAACAG 59 128628177 128628201 GATGAATTTGCCTATCCTATCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061892 ENSRNOT00000081583 1 1 1 60 11 64748618 64748636 ACTCCTCTGCTAGAACCTC 58 64748659 64748678 CGTCTGTCTTTCAAGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061892 ENSRNOT00000081583 2 1 1 60 11 64748538 64748556 AGCTAGGCACTCAGTTGAC 59 64748577 64748598 TGACCTAACAATGATCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052853 ENSRNOT00000081391 3 1 1 60 19 61757571 61757592 ATGCATTATTAGGTGGTAGAGG 58 61757611 61757631 CACAGGTTAGAACACTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052166.1 ENSRNOG00000053755 ENSRNOT00000091168 1 1 1 95 3 40477692 40477711 CCATATGGCCAATGGTAGAC 58 40477153 40477555 TGGGACTTGATGAATGTTGAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000055754 ENSRNOT00000085057 3 1 1 72 5 151099252 151099271 TTGCTTCACAACACAAACAC 58 151099306 151099324 ATCTGCATGTCATCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060906 ENSRNOT00000078484 2 1 1 60 19 45848858 45848877 GTTGCACTCCAATATGCTGG 60 45848817 45848835 GATGTGGTTGACTCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 3 1 1 169 13 54915004 54915027 AGTATCATTACTGGAGAGGCAG 59 54915158 54915176 TTTGCACCTACACATTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000051891 ENSRNOT00000088408 1 1 1 60 17 43770521 43770539 GTAAGGGCCTGGGTAAAGG 60 43770479 43770498 TGGATGTTGTCTCGTAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027388.1 ENSRNOG00000031706 ENSRNOT00000041892 3 1 1 60 17 27765497 27765515 CCCTGGCATGATCAAAGAC 59 27765455 27765474 TCTTCTTTCAGAGTGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058104 ENSRNOT00000080360 1 1 1 60 19 55619177 55619195 GGGACAGGCTAAACATCAC 58 55619135 55619153 AGGGAAAGAACTCGGTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053345 ENSRNOT00000083506 3 1 1 60 7 36699315 36699335 TCACAGAAGACGAAGACATCC 60 36699353 36699375 CACATATCCTTAATGAAGGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043039.1 ENSRNOG00000055398 ENSRNOT00000077099 1 1 1 60 19 18812747 18812768 CTTTAGTAATGCTTGGTTGCTC 58 18812783 18812807 CTCCTTTCTAAATCAGTTCCTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043039.1 ENSRNOG00000055398 ENSRNOT00000077099 2 1 1 60 19 18812765 18812789 GCTCTATGAGTTACAATTCTGTAGG 59 18812804 18812825 AAAGAATTCTATGTGCTGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060698 ENSRNOT00000085827 3 1 1 60 3 61415752 61415771 ATCAGGAAGGTGGTTTACCC 59 61415711 61415729 GAAGTCAGCACATCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015165.1 ENSRNOG00000057821 ENSRNOT00000079316 3 1 1 86 14 48169816 48169838 CAGTAAGAAATATGGTGTGGACC 59 48169878 48169905 CGAATAGTATCGTCTATGTTAGAGC 59 Novel Rattus norvegicus 81 AABR07046669.1 ENSRNOG00000051429 ENSRNOT00000082787 1 1 1 69 5 1507144 1507162 GATGGAAGTCAACAGCTGC 59 1507196 1507214 AGTCTTCTCAACCCAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA15 ENSRNOG00000057229 ENSRNOT00000085729 3 1 1 61 5 29494860 29494881 CAGTCAGTAATTTACACAGCCA 59 29494901 29494921 CCAGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126530.1 ENSRNOG00000047101 ENSRNOT00000071596 3 1 1 63 18 28205266 28205284 AGAGAAGAAGGAAGGAGGG 58 28205311 28205329 AGAGGATGATGGCACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053277 ENSRNOT00000084468 3 1 1 61 3 124796082 124796100 CATGAGCGATTGTACTCGG 59 124796124 124796143 ATTCCAGTTTCCCACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056099 ENSRNOT00000091451 1 1 1 60 18 81588150 81588168 GAGTGCTTACTGCTTCCTG 58 81588108 81588126 TGGGCTAAAGAATGGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059360 ENSRNOT00000079652 2 1 1 60 4 25065763 25065783 CTTCTCTGAATGTGCTGACTC 59 25065804 25065823 AGTTATGCAGTAGCATTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034573.3 ENSRNOG00000059468 ENSRNOT00000073785 2 1 1 82 11 78980278 78980498 CGGGACCACAGAAATAGCA 60 78980214 78980232 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053209 ENSRNOT00000077300 2 1 1 60 20 56179341 56179362 AACCTAAAGATCCTTATGGCTC 58 56179302 56179322 ACTCATTCTTGCAGCTAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065165.1 ENSRNOG00000053619 ENSRNOT00000088043 3 1 1 60 6 112726774 112726794 TCATCATTACTCACTGAGAGC 57 112726734 112726752 AAGGAGGAGTCTCCATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059598 ENSRNOT00000079372 1 1 1 60 4 157768762 157768780 GGCACCTTTGTAGTGTACG 59 157768720 157768739 TCTCCTAGGTCTCTTAGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139605.1 ENSRNOG00000060996 ENSRNOT00000091556 2 1 1 151 7 117644267 117644285 GTCTCCCTAAAGGCACTGG 60 117644133 117644151 GATTCTGCTTTCCGCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07046866.1 ENSRNOG00000060709 ENSRNOT00000085321 3 1 1 62 5 10125141 10125159 AGACCTGCTGATGCTACAG 59 10125184 10125203 CCAGAATAGAAAGGCTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042385.1 ENSRNOG00000047872 ENSRNOT00000070905 2 1 1 77 X 154585152 154585171 TCCCTGAAAGAATTCCAGGA 58 154585210 154585231 CCTGTGTTCTTTCTTGATTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000057288 ENSRNOT00000080839 1 1 1 60 9 81007269 81007293 GGTATTGTTCTTATATCAGTCAGGG 59 81007233 81007255 CAAGCTAGGATAACAAAGGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057288 ENSRNOT00000080839 2 1 1 61 9 81007269 81007293 GGTATTGTTCTTATATCAGTCAGGG 59 81007232 81007253 ACAAGCTAGGATAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095267.4 ENSRNOG00000061511 ENSRNOT00000088637 2 1 1 82 X 156153952 156154149 GTATCTTAGCTGTTAGGTGGAC 58 156153891 156153909 CAGGGAGAGTTGATCAAGG 57 Novel Rattus norvegicus 81 SNORA3 ENSRNOG00000051445 ENSRNOT00000079946 1 1 1 60 4 33946895 33946913 GAGAATCTGCTGGTCTTGG 58 33946937 33946955 GCACTGGTCACTAACAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD71 ENSRNOG00000059926 ENSRNOT00000082476 1 1 1 60 19 41824898 41824916 CTGGAGGATGAAGCAAGGA 59 41824856 41824874 GTGAGTTTCAGCACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056085 ENSRNOT00000083136 2 1 1 60 11 27642529 27642547 TAGGAGCGGAACCATTGAG 59 27642487 27642506 GAACACAGTGTAGACACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000052120 ENSRNOT00000081392 3 1 1 60 6 133829665 133829683 CGATGATGAGATCTGGTGG 58 133829707 133829725 AGATGTCTGGTTACTTGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057302.1 ENSRNOG00000040372 ENSRNOT00000062125 3 1 1 63 7 65243026 65243044 GGATTAATGACCAGCTGGG 58 65242981 65242999 AATTAATGGCTGGCTGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052321 ENSRNOT00000078307 3 1 1 60 11 55842870 55842889 GCCAAGATGATCTGACTGGT 60 55842829 55842847 ACGCGGATCAGTGATAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066096.1 ENSRNOG00000045962 ENSRNOT00000070833 2 1 1 69 9 2135873 2135892 TGAAATCCAGCTGTAAGGCA 60 2135823 2135841 ATGGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061585 ENSRNOT00000083060 2 1 1 60 4 80302916 80302936 CATGTTTCATGTGCATCAAGG 59 80302876 80302895 CACACTGAGCATAGACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060397 ENSRNOT00000084301 3 1 1 66 11 16763449 16763469 GCAGTTATTCTGTCACATGTG 58 16763495 16763515 CACTAAACATAGGTGAAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136847.1 ENSRNOG00000046430 ENSRNOT00000074835 2 1 1 60 11 71469344 71469363 GTGTAGTCCTGGCTATCCTG 59 71469386 71469404 ATCTCTGAGTTCAAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033859.1 ENSRNOG00000036332 ENSRNOT00000054454 2 1 1 60 11 40945161 40945181 AACATGCCTTAGGTATCACTG 58 40945202 40945221 AGTCATGCTTGAGAATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065154.1 ENSRNOG00000036501 ENSRNOT00000054609 3 1 1 61 6 111845952 111845973 GCTGTATAAGAACTTCAAGCCT 59 111845912 111845930 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057448 ENSRNOT00000083733 2 1 1 60 7 3870034 3870052 CAAAGAGGACAACCTTCCA 57 3869992 3870011 TACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.5 ENSRNOG00000055437 ENSRNOT00000084298 2 1 1 95 17 44738995 44739013 TAGCTCTCCGTCTTCTTGG 59 44738918 44738936 GGAGCTCAACAAACTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076396,ENSRNOT00000085052,ENSRNOT00000088581 3 3 6 61 10 74882538 74882556 GCTGCCTGTACTTCATCTC 58 74882691 74882712 CATGAATTCAACATCCAATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058826.1 ENSRNOG00000036515 ENSRNOT00000054622 2 1 1 63 7 138683288 138683309 GCGTATTTAAGAAAGCATCCTC 58 138683333 138683351 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052417 ENSRNOT00000083771 3 1 1 60 4 12884156 12884174 GTCACTGTGCTTCTGAAGG 59 12884114 12884132 CAGACAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055528 ENSRNOT00000085160 3 1 1 66 4 103047065 103047084 TCAGTGCTGTATCACATGTG 58 103047018 103047036 AAATACTGGGCAGACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058346 ENSRNOT00000082093 1 1 1 60 17 50959711 50959729 GGGATATCTCCTTCCTCCC 58 50959669 50959688 ACAGAACATGCAACTTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027810.1 ENSRNOG00000036339 ENSRNOT00000054460 2 1 1 64 17 44708738 44708757 GTGCATGGAGTTGAATGGAG 59 44708693 44708711 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054187 ENSRNOT00000085036 3 1 1 60 17 75846128 75846146 GACACCGAGAAGATTAGCA 57 75846168 75846188 GGAATGCTTCATGGATTTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056829 ENSRNOT00000078339 1 1 1 60 17 1725274 1725292 CGAGGTGCAGTTATTGCTG 59 1725232 1725250 ATTGCAAGTCATGATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114111.1 ENSRNOG00000052955 ENSRNOT00000090498 2 1 1 195 7 70452546 70452564 CTGAATCGTAAATCCGCCG 59 70452369 70452387 GCTTGAGCAATCTTCTCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071966.1 ENSRNOG00000043180 ENSRNOT00000047859 3 1 1 150 1 174825951 174825970 GAAGAGCTCTTTCCTTACGG 58 174825818 174825838 GATGATCCCATTGGTGCAC 59 Novel Rattus norvegicus 81 AABR07067042.2 ENSRNOG00000048697 ENSRNOT00000073490 1 1 1 71 9 27589333 27589351 ATGAGACCCAGCTGTAAGG 59 27589280 27589298 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053082 ENSRNOT00000077633 2 1 1 60 10 48902772 48902790 GTGCCATGATCTGAAGGGA 60 48902809 48902832 CTCCAACCATTTCATATAGAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000054319 ENSRNOT00000077706 1 1 1 83 14 80678609 80679548 CATCTGCTGAGACACTTGC 59 80678544 80678562 ACTTCCAGTTCAGGCTCTC 59 Novel Rattus norvegicus 81 AABR07021558.1 ENSRNOG00000055673 ENSRNOT00000088425 3 1 1 96 13 78328809 78328832 CTATGGCTTACCAGTGCCT 59 78328724 78328744 AGTGAAAGCAAGAAACAACCC 60 Novel Rattus norvegicus 81 AABR07052500.1 ENSRNOG00000055605 ENSRNOT00000082936 1 1 1 174 3 58173396 58173423 CCTCTTTCCTCTTTATTCTCAGC 59 58173241 58173259 TTGGCTGGGAGAATGACAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055283 ENSRNOT00000080135 2 1 1 60 12 43916883 43916902 TACATCAGTAGGTGGCAGAG 59 43916842 43916863 TAATCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142458.1 ENSRNOG00000054641 ENSRNOT00000089872 1 1 1 77 8 79690914 79690933 AACCTATCTGAACACTGCAG 58 79690855 79690876 GTTGAAGTAATATCCCTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061666 ENSRNOT00000083832 1 1 1 60 9 41373995 41374017 CAGTACCATGATCATGATCATGG 59 41374037 41374055 CATCCGGAGTACAATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071870.1 ENSRNOG00000058422 ENSRNOT00000077327 2 1 1 80 1 64079923 64080017 CAGAAGAGGTCAAACCCAG 58 64080290 64080310 ACCATCCTTAGTTTCCATGTC 58 Novel Rattus norvegicus 81 AABR07061530.1 ENSRNOG00000043588 ENSRNOT00000068855 3 1 1 61 4 131919684 131919702 GTCTTCTGAGCAGACCCTG 60 131919641 131919660 AATACAAACACGGGCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056357 ENSRNOT00000079611 3 1 1 61 10 25516048 25516066 ATACTTTCCCAGAAGGCGG 60 25516005 25516024 ATGGATGATCCTCACTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096792.1 ENSRNOG00000054624 ENSRNOT00000085280 2 1 1 80 7 133135800 133135822 CGCAGGCTCAAATATAATCTCAG 60 133135858 133135991 GAACGGGATTCTGATATTGTGAC 60 Novel Rattus norvegicus 81 AABR07009715.1 ENSRNOG00000031378 ENSRNOT00000049885 1 1 1 60 2 109317592 109317613 CCCTGTATCTCATAAAGTACGA 57 109317633 109317652 TCCTTGTTCAGCTCTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD82 ENSRNOG00000055464 ENSRNOT00000089999 1 1 1 60 9 93374094 93374115 CACAAGTGATGACTAACAAAGG 58 93374055 93374075 CATACTGCATTTCAATCCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055808 ENSRNOT00000083797 3 1 1 60 8 6876594 6876615 AAGAAAGGTTACCTATGTGCTC 58 6876555 6876575 AGGCTACTAAACATTCAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041972.1 ENSRNOG00000058507 ENSRNOT00000088855 3 1 1 60 X 144418606 144418626 AGAGACGGCTCATCTTTACTG 60 144418648 144418666 ACTACGGTTTCCGTCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043776.1 ENSRNOG00000061454 ENSRNOT00000078388 1 1 1 60 19 39670667 39670686 TTAGAATCCACAAGCGACTC 58 39670626 39670647 GTAATCCGCTTAACAATCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054716.2 ENSRNOG00000053380 ENSRNOT00000086910 2 1 1 80 3 167442587 167442609 TGAATCCTTCTCAGAAGAGTCTC 59 167442647 167442870 CCCAAATGTAGCCTATAGCAC 59 Novel Rattus norvegicus 81 AABR07038219.1 ENSRNOG00000052118 ENSRNOT00000084562 1 1 1 60 X 43294048 43294066 TTCCCACCCAGACATTCAG 59 43294090 43294108 AACCGCAGCTATAATTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009965.1 ENSRNOG00000053688 ENSRNOT00000079431 3 1 1 74 2 118746508 118746526 CCCGGGATACCTTCAAGAG 59 118746564 118746583 CACATGCAGAAGGTACAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040282.1 ENSRNOG00000061407 ENSRNOT00000089023 2 1 1 60 X 96822699 96822719 CCAGTGTCTTTGTTGATTACC 57 96822659 96822678 TCTGACTTGACTTGCAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071328.1 ENSRNOG00000043551 ENSRNOT00000068818 1 1 1 60 8 109711137 109711156 TGGCCTTATTGGAGGAAGTG 60 109711179 109711197 GGCTTGAGCATCTGAAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042397.1 ENSRNOG00000056855 ENSRNOT00000085224 3 1 1 60 X 154917328 154917347 GAATGGTGACAACATGCTGG 60 154917287 154917306 GACTTTCCATCCCTTGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071935.2 ENSRNOG00000061441 ENSRNOT00000087364 3 1 1 60 X 157200723 157200742 CACCATCAACAAGAATGCTC 58 157200682 157200701 GTTCTTTCGGATCATCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123425.1 ENSRNOG00000059703 ENSRNOT00000080546 1 1 1 126 12 46718802 46718820 TCCTTCTGCCTCAGTTTCC 59 46718915 46718933 AATCCCTGCAAACTTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021987.1 ENSRNOG00000058348 ENSRNOT00000080475 1 1 1 80 13 101664048 101664637 GAACACAAACCAAGGACCA 58 101663986 101664006 ACCTTTCATTAGGAACCTCAG 57 Novel Rattus norvegicus 81 AABR07054460.1 ENSRNOG00000048284 ENSRNOT00000072710 3 1 1 60 3 154868922 154868941 GTGTAATCTTGGCTGTCCTG 59 154868881 154868901 AATCTTTGAGTTAGAGGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054116 ENSRNOT00000089813 3 1 1 61 3 156985118 156985136 GTCACATGTGCATCAGTGG 59 156985160 156985179 CAGAACACGAGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071746.1 ENSRNOG00000018786 ENSRNOT00000025383 2 1 1 83 8 128943721 128943742 GCCAGAGTAAACATTAACACTG 58 128943658 128943679 TTCCACCACAGATTTCATGTC 59 Novel Rattus norvegicus 81 AABR07057460.1 ENSRNOG00000014169 ENSRNOT00000018963 3 1 1 60 7 72599678 72599698 TGATTACCATCATGCAGAACC 59 72599719 72599738 TGTCTGTCCAAGAACCAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061033 ENSRNOT00000083313 1 1 1 60 8 67919713 67919731 GTGACTTCTCCAAAGGCAG 59 67919755 67919773 GTGAGCATAGACCCAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054897 ENSRNOT00000089600 2 1 1 60 8 97413445 97413464 CTTCCTTCCTCATCCATGTG 58 97413485 97413505 TTCTTCAGTATTTGGGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057922 ENSRNOT00000084909 2 1 1 60 8 72774536 72774554 AGGGAAGATTAGCATGGCC 60 72774494 72774514 GTAACACCACGAATATCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000060267 ENSRNOT00000080953 1 1 1 60 8 44992802 44992823 TGATGAATGGTCCAAACATTCG 60 44992843 44992862 GAAGGTAACTGCCAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030729.1 ENSRNOG00000030224 ENSRNOT00000044922 1 1 1 60 10 102289439 102289457 CATGTTTGTGATGGGTGTG 57 102289397 102289416 ATTGCTGACAATCTTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.1 ENSRNOG00000054716 ENSRNOT00000077800 2 1 1 80 14 85236641 85236664 CTGAAGGAAAGAGAAATTGCAG 58 85236582 85236600 TGTCTTTCTTTGCCAGCTC 58 Novel Rattus norvegicus 81 AC130555.1 ENSRNOG00000051506 ENSRNOT00000083931 3 1 1 61 8 22529857 22529875 AGACTGAATAGCCAACCCT 58 22529814 22529833 GTACATGTCTTGGTCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058622 ENSRNOT00000089738 2 1 1 61 8 72902462 72902480 TGCATGTGATCCCTCAGTC 60 72902504 72902523 GATTGCAGTGGCTAAGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041053 ENSRNOT00000062806 2 1 1 60 8 39495992 39496013 TCCTGGATATGTCTGATCTCAG 59 39496034 39496052 CCCATCCAAGCACTAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066339.1 ENSRNOG00000048566 ENSRNOT00000074536 3 1 1 79 9 8026006 8026024 ATCCCGGAAAGAATTCCAG 57 8027007 8027028 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000051651 ENSRNOT00000081581 1 1 1 60 8 109746306 109746325 GCCTGGTCTTATCTCATCTC 57 109746348 109746366 TCTCCTCTGACCACTACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 2 1 1 88 1 214009854 214009873 ACGAGACTAGGAACACCAG 59 214009782 214009800 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058555 ENSRNOT00000079055 1 1 1 60 8 85480360 85480379 CCATTGTAGGAGAACGTAGG 58 85480319 85480338 GCCTCATTTGGATGTGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073400.1 ENSRNOG00000059084 ENSRNOT00000088997 2 1 1 84 8 50539065 50539279 ACAGACAGGTTCTTCTCCAG 59 50539000 50539019 AGATGGAGAAGTTCAGGCAG 60 Novel Rattus norvegicus 81 AABR07071431.1 ENSRNOG00000046630 ENSRNOT00000073748 2 1 1 60 8 114847383 114847402 CCTCACTGTTCTCTATGGCT 59 114847425 114847443 ATCCCTATATGAGCGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052812 ENSRNOT00000078659 2 1 1 60 8 48825744 48825766 CTTTGAAAGATACAGAGTGTCCC 59 48825783 48825804 GTTAAGTGCTACTCAAGTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058872 ENSRNOT00000081507 1 1 1 101 8 85366254 85366272 TGAGGTTTATCTGAGGCGC 60 85366334 85366355 AGAGACAAAGTAGTGAGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000058779 ENSRNOT00000079614 2 1 1 65 8 96302132 96302153 TGATGATCCTATCCCGAATCTG 59 96302088 96302106 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000090814,ENSRNOT00000091341 2 2 4 60 20 4427219 4427237 TTTCAGCCCTAAACTTGCC 58 4427177 4427196 ACCTCTTGATTCTGCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000053212 ENSRNOT00000080362 3 1 1 60 3 40419844 40419865 AGCAAATGCCTAAAGAACTGTC 60 40419882 40419904 TCTCTAGTGAAGTCCAGAATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024908.1 ENSRNOG00000055634 ENSRNOT00000078775 3 1 1 60 16 21807236 21807255 CTGAATTCCCAATTGCACCT 59 21807195 21807213 TCTAAGAAGTTCACGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA18 ENSRNOG00000061856 ENSRNOT00000080529 3 1 1 60 3 153072079 153072099 GTGAGAACTTGATCACTACGT 58 153072039 153072057 CAAAGCACACTCCATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056926 ENSRNOT00000087681 3 1 1 61 3 146718693 146718713 AGAGAAGATTAACATGGGCTC 58 146718652 146718670 TTTATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057435 ENSRNOT00000089019 2 1 1 60 3 141985110 141985132 GGAACGATACAGAGAAGATTAGC 59 141985072 141985091 GCTTCCGGAATTTACGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130232.1 ENSRNOG00000039505 ENSRNOT00000060549 1 1 1 60 16 19622212 19622230 TGTTGCTATGGACACCGAG 60 19622252 19622272 GCTTCTGAATTCTCCAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031164.1 ENSRNOG00000055448 ENSRNOT00000089998 1 1 1 80 18 2501695 2511003 CAGCACAAGGCATCTATCC 58 2501633 2501652 CCAGGATCAGAAGTAAGCAG 58 Novel Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 1 1 1 66 14 32773505 32773523 TGCATTTGTATTCTCCGCA 58 32770359 32773475 TCTCTTAACCCATCTGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC125757.1 ENSRNOG00000058467 ENSRNOT00000087795 3 1 1 81 5 2888559 2888578 TGTTTGACCTTTCACCACAG 59 2888307 2888325 ACAAGTGCTGCCAAATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062664.1 ENSRNOG00000056230 ENSRNOT00000088290 1 1 1 80 6 2399607 2399937 CACATACCTCAGGCTTCAC 58 2399977 2399999 CAGGATAAGGGCTTTATCATAGG 58 Novel Rattus norvegicus 81 AABR07031328.1 ENSRNOG00000061291 ENSRNOT00000087124 1 1 1 80 18 9430268 9433033 GTAATTGTCTCGAGGTCCG 58 9430206 9430225 GAAACTGCCATCATGTTGTG 58 Novel Rattus norvegicus 81 AABR07014897.1 ENSRNOG00000052390 ENSRNOT00000091721 2 1 1 80 14 36889985 36890201 AAGGTCAGGAAGATACTTATCCTG 60 36889928 36889950 CTGACATTTCTACTCAGAGAAGC 59 Novel Rattus norvegicus 81 AABR07031388.1 ENSRNOG00000054849 ENSRNOT00000079904 2 1 1 80 18 12104431 12116524 TTCCGAAGTTCACATGAGAG 58 12104370 12104389 GTGACAATGTTGCTTACTGC 58 Novel Rattus norvegicus 81 AABR07014897.3 ENSRNOG00000058471 ENSRNOT00000090509 1 1 1 80 14 36981934 36983754 CATAGGATTTATGCAGATCATGGAG 60 36983789 36983810 AAGTATCTGAGTGGTCCTTGTG 60 Novel Rattus norvegicus 81 AABR07046779.1 ENSRNOG00000058268 ENSRNOT00000077796 2 1 1 80 5 6404510 6422772 ATTCAGGTCTCAGGGTTGG 59 6422811 6422834 ATTACTGGAGACTTCTAGCATAGG 59 Novel Rattus norvegicus 81 AABR07062758.1 ENSRNOG00000056625 ENSRNOT00000083746 1 1 1 80 6 6498725 6498743 TCCTGTCACAGATGTCTGC 59 6498785 6499257 AGGAGATGCTTCATGACTGAG 60 Novel Rattus norvegicus 81 AABR07031419.1 ENSRNOG00000058992 ENSRNOT00000077144 1 1 1 81 18 13276140 13276159 ACACTTTGGACAGCATAGAG 58 13276203 13276344 AAAGAACCCATGGTCTGAG 57 Novel Rattus norvegicus 81 AABR07015394.1 ENSRNOG00000056871 ENSRNOT00000078937 1 1 1 97 14 53771878 53771896 CACCATACTCCTTTGCCGA 60 53771956 53774428 ATCTTTGGTCCCAAGTAGCA 59 Novel Rattus norvegicus 81 AABR07015467.1 ENSRNOG00000061025 ENSRNOT00000077556 3 1 1 66 14 58196930 58196950 CAGATGATTGTGACCACACTC 59 58213143 58213161 TCTTCTGTGTCTTCCTCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07029639.1 ENSRNOG00000058124 ENSRNOT00000086993 3 1 1 80 10 42312754 42312775 CAACACCTCACAGAGAATTCAC 60 42312814 42312985 AAAGTGAACTGTTCCTGTTCC 59 Novel Rattus norvegicus 81 AABR07029769.1 ENSRNOG00000053841 ENSRNOT00000090454 2 1 1 97 10 49607216 49614164 CACAAAGGGCCCTTTAGGA 60 49607137 49607155 CTGTCTCTGGATGCTCCAC 60 Novel Rattus norvegicus 81 AABR07029831.1 ENSRNOG00000053014 ENSRNOT00000086494 2 1 1 94 10 53680332 53685778 TCCGTTGTGAATGCAAAGG 59 53680256 53680274 ACTGTCTAAACCAGTGGGC 60 Novel Rattus norvegicus 81 AABR07060769.1 ENSRNOG00000052931 ENSRNOT00000088910 3 1 1 84 4 93013148 93033355 ACCATCAAGAAGGGTGGAG 59 93033403 93033421 TTTCGAAGTGGACATTGGG 58 Novel Rattus norvegicus 81 AABR07030180.1 ENSRNOG00000055718 ENSRNOT00000090718 2 1 1 80 10 74152533 74153630 TATTTCAGCTGGAAAGCCA 57 74152471 74152489 GTATCCCAGAGCTGAACTC 57 Novel Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 3 1 1 65 5 46306982 46314589 GTTAGCACAGAGTGGATTTCAG 59 46306938 46306958 GTCATGGTGATTCTCCAAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015791.1 ENSRNOG00000059384 ENSRNOT00000090953 3 1 1 84 14 76474393 76474412 CTAAGTTCCAGGAATGTGCA 58 76473227 76474346 TTTCATATGTGCGACTGGG 58 Novel Rattus norvegicus 81 AABR07048075.2 ENSRNOG00000053369 ENSRNOT00000085035 2 1 1 108 5 60521828 60521846 GGCTTCTGAAGCTGTACCT 59 60524218 60524236 GGTTTCCTCTACCTTCCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000544.1 ENSRNOG00000055971 ENSRNOT00000091657 3 1 1 81 1 17432133 17432295 GCATTATGGAGGGACAAGC 59 17432338 17432358 TCTAGAATAGTGCAGTGGTCC 59 Novel Rattus norvegicus 81 AC109660.1 ENSRNOG00000052427 ENSRNOT00000079555 2 1 1 81 14 83082377 83083593 GAACACAGACCAAAGCCAC 59 83083637 83083656 AGAAGAGCAGAGATTCTGGG 59 Novel Rattus norvegicus 81 AABR07030366.1 ENSRNOG00000060524 ENSRNOT00000088573 1 1 1 90 10 82739590 82742963 AATGTACCAGGCCTTCCAG 59 82739518 82739537 TGATACGGTGGTCTTGTCTC 59 Novel Rattus norvegicus 81 AABR07015917.1 ENSRNOG00000052037 ENSRNOT00000083054 2 1 1 80 14 86100199 86100217 GATGGATGCTAGGGTTGAC 58 86100259 86100577 AGAGTACATCTCAGTGTATGC 57 Novel Rattus norvegicus 81 AABR07015942.1 ENSRNOG00000057726 ENSRNOT00000078849 1 1 1 85 14 87140446 87140464 GTGATTCCAACGTGGTCAG 59 87141743 87141761 CATGAGAGCTGTTGCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048303.2 ENSRNOG00000055665 ENSRNOT00000077721 2 1 1 81 5 71461322 71461344 CTTCTACTATTACCACTCCCTGG 60 71452153 71461281 CACAACAGCCATATGCCTC 59 Novel Rattus norvegicus 81 AC117122.1 ENSRNOG00000053986 ENSRNOT00000081751 1 1 1 153 4 120882754 120882772 GTTTCAGCTCACTCTGCAC 59 120918186 120918204 AGGATCTTCAGTTCTGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048478.1 ENSRNOG00000060139 ENSRNOT00000090293 3 1 1 80 5 77979859 77979882 GAAGATCGATAGATCCTGTTATGG 59 77978894 77979823 TTCTTAGTTCACTTGAGACCTG 58 Novel Rattus norvegicus 81 AC229945.2 ENSRNOG00000057584 ENSRNOT00000079104 2 1 1 108 5 79922578 79922596 TCTGACCTCATCTCCACCT 59 79922668 79955164 TTTGTTCCAGGACCTCCTG 59 Novel Rattus norvegicus 81 AABR07061453.1 ENSRNOG00000052345 ENSRNOT00000086966 2 1 1 80 4 125607138 125607159 ATAGTAACTAGAGCTGGAGTGG 59 125605238 125607097 AGGCAAGCTTCTTACTCGT 59 Novel Rattus norvegicus 81 AABR07030566.2 ENSRNOG00000053962 ENSRNOT00000081928 3 1 1 81 10 93181121 93181139 CAACATGGGAGTCAAGCTG 59 93181183 93182209 AGGCACTTTATTGTCAGCAC 59 Novel Rattus norvegicus 81 AABR07061465.1 ENSRNOG00000056263 ENSRNOT00000081330 1 1 1 88 4 126985928 127004758 TACATCACCACGTGGACAC 60 127004806 127004828 CAGCTTCTCTTGTTCACATATCC 60 Novel Rattus norvegicus 81 AABR07000723.1 ENSRNOG00000056881 ENSRNOT00000080217 3 1 1 81 1 24737872 24737892 GCTCTAACACAGAGATTCAGC 59 24737931 24739749 GTTTCTAGAACCATAGAAGACCC 58 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000081578 1 1 2 82 10 93234873 93235423 GTAAAGTGGCATTCTGGGTC 59 93235468 93235486 TCATCCTCCAGATCGAAGC 59 Novel Rattus norvegicus 81 AABR07048977.1 ENSRNOG00000055657 ENSRNOT00000089752 2 1 1 88 5 98846535 98846555 TCAGACTTTATCAGGAGCCTC 59 98830827 98830851 GCTCTTTCTTGATAGGTTGTATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000986.1 ENSRNOG00000054753 ENSRNOT00000089420 2 1 1 80 1 31002555 31003545 CCTTTGTAGACAGGTTTATCTCC 59 31002497 31002520 CAGTTGAGTTAACTGAGCTATGTC 60 Novel Rattus norvegicus 81 AABR07030642.1 ENSRNOG00000054591 ENSRNOT00000079534 1 1 1 80 10 97347949 97349585 AGAAGAGATGGAAGGCTGG 59 97349627 97349647 TTCCACTGTCATCTACATCCA 59 Novel Rattus norvegicus 81 AABR07049282.1 ENSRNOG00000061020 ENSRNOT00000091898 2 1 1 80 5 113190824 113202716 GACAGCTAGTGTTGTTATCGT 58 113190764 113190783 CCAGTGTTTCTAATACCGCC 59 Novel Rattus norvegicus 81 AABR07049288.1 ENSRNOG00000054667 ENSRNOT00000087340 3 1 1 125 5 114037379 114037397 GTTTCCATTGCTTCCGGAC 60 114114161 114114180 TCCACTTCTTTGGTCTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030714.1 ENSRNOG00000054938 ENSRNOT00000077545 2 1 1 83 10 101113033 101113051 TGTATCAGCCCAACAGGAG 59 101113094 101123579 CGAGGAGAAATAAGATACAGAGC 59 Novel Rattus norvegicus 81 AABR07062061.1 ENSRNOG00000053096 ENSRNOT00000083680 3 1 1 91 4 159340943 159341288 GACTTCACTGTACAGCTGG 58 159340870 159340888 TCGTATCTCTTCCAACCCA 58 Novel Rattus norvegicus 81 AABR07030793.1 ENSRNOG00000059335 ENSRNOT00000081753 3 1 1 60 10 104841911 104841929 ATCTCTGCTCTGCTCTTCC 59 104839179 104839202 CTATGAGTAAATCTTGAGCAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030796.1 ENSRNOG00000059563 ENSRNOT00000085850 1 1 1 103 10 104902303 104902321 CTTCAGCTCTGCTCCTCTC 60 104901777 104901795 ATACTGACACCACACGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062112.1 ENSRNOG00000056752 ENSRNOT00000083544 3 1 1 60 4 161519685 161519703 AGAACTTCACCATCCTGCA 59 161519826 161519845 ATACACAGCAAGGTCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017227.1 ENSRNOG00000056328 ENSRNOT00000081094 2 1 1 83 15 18257069 18257308 CAGGCAGGATCAATCATGC 59 18257354 18257373 ACCTCAATTTCCACTTTGCA 58 Novel Rattus norvegicus 81 AABR07049520.1 ENSRNOG00000058765 ENSRNOT00000088258 3 1 1 90 5 125571207 125571225 AAGTGAAGGGTCAGACTGC 60 125567382 125571154 TCATCTCATGTTCAGGGAGC 60 Novel Rattus norvegicus 81 AABR07030914.1 ENSRNOG00000061432 ENSRNOT00000091969 3 1 1 129 10 109098800 109098818 CAGTGAGCTATGTGGGAGG 60 109097700 109098708 TCAGATCTGTCACGTGTCTG 60 Novel Rattus norvegicus 81 AABR07049669.1 ENSRNOG00000055693 ENSRNOT00000092111 1 1 1 73 5 132418049 132418067 GAGTCATGCTCATTCTGCA 58 132420888 132420906 TTCTAACCACAGGGTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049669.1 ENSRNOG00000055693 ENSRNOT00000092111 3 1 1 74 5 132418048 132418066 GGAGTCATGCTCATTCTGC 59 132420888 132420906 TTCTAACCACAGGGTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062404.2 ENSRNOG00000051444 ENSRNOT00000078325 1 1 1 80 4 175052247 175054389 CTGCCTCTTTCTTATAAAGGTTCC 60 175052190 175052212 TTTAGGGAGGATGTAGTTGATCC 60 Novel Rattus norvegicus 81 AABR07017512.1 ENSRNOG00000059064 ENSRNOT00000081480 1 1 1 84 15 24746951 24748751 CATACAAACGAGGAACTGGG 59 24746886 24746904 AGATACCGTGCCATGTCTG 60 Novel Rattus norvegicus 81 AABR07017512.1 ENSRNOG00000059064 ENSRNOT00000081480 3 1 1 86 15 24746951 24748751 CATACAAACGAGGAACTGGG 59 24746884 24746902 AAAGATACCGTGCCATGTC 58 Novel Rattus norvegicus 81 AABR07049769.1 ENSRNOG00000055686 ENSRNOT00000085080 3 1 1 80 5 137290715 137290867 GTTGTTAATCAGAGGACATCGA 58 137290908 137290926 GGAACAGGGATTATGCAGG 58 Novel Rattus norvegicus 81 AABR07062539.3 ENSRNOG00000053613 ENSRNOT00000080716 1 1 1 83 4 181705792 181706403 TGTGCTTGTAAGCAGATGTG 59 181706449 181706467 AAACTGTCCTTGGAAGCGT 60 Novel Rattus norvegicus 81 AC114389.2 ENSRNOG00000056441 ENSRNOT00000087503 1 1 1 84 1 48267903 48267922 CAAATTCCATGTGAGTGCCT 59 48266295 48267856 GTTTCAGAAGCTGCCTTGG 60 Novel Rattus norvegicus 81 AABR07031689.1 ENSRNOG00000056190 ENSRNOT00000090460 1 1 1 101 18 26996191 26996742 TGTATGTGCAGAAGCAGCT 60 26996807 26996825 TCAGACACAGTAGGCTGTG 59 Novel Rattus norvegicus 81 AABR07062885.2 ENSRNOG00000057197 ENSRNOT00000090924 3 1 1 95 6 12716926 12716944 GTCACATGGCAAGATCCAG 59 12714958 12714976 AAACTCCAAGTTCACCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031759.1 ENSRNOG00000059937 ENSRNOT00000079229 2 1 1 60 18 32992379 32997310 GCCATAAAGATACAGCTTACAC 57 32997330 32997349 TTTGCTCAGACTGCTAAGGA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07001699.1 ENSRNOG00000052700 ENSRNOT00000077249 1 1 1 84 1 55356222 55359260 CTGGAAGGACTGAGGATCC 59 55356156 55356175 GCACTCTGTTCATTCATGGT 59 Novel Rattus norvegicus 81 AABR07001734.1 ENSRNOG00000054834 ENSRNOT00000089548 2 1 1 80 1 55730728 55731219 CTTTCTCAGGAAAGGGCAG 58 55731263 55731281 GAGGATGCCTTGATTTGCA 59 Novel Rattus norvegicus 81 AABR07063553.1 ENSRNOG00000055840 ENSRNOT00000078414 1 1 1 80 6 35091805 35091825 GGATCCCTGTATAGTGTAGGC 59 35091865 35096305 TCAAGCTTTCACATCTTGGAC 59 Novel Rattus norvegicus 81 AABR07001926.2 ENSRNOG00000051875 ENSRNOT00000090676 1 1 1 84 1 62208083 62223193 GCAATAGATTCTGGGTGCT 58 62208017 62208035 AGATACACAGGTGACCGAG 59 Novel Rattus norvegicus 81 AABR07050283.2 ENSRNOG00000061263 ENSRNOT00000082432 3 1 1 62 5 159213622 159213640 CTTCCTTGGTCCTGGTACC 59 159213956 159213976 ATTTGATTCGTCGTGGATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 1 1 1 69 15 50310005 50310023 AGACAAAGGCAGGATGAGG 59 50301627 50309972 CAACATAACAGGGAGGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063652.1 ENSRNOG00000053504 ENSRNOT00000087716 3 1 1 83 6 39879463 39879483 CATGGGTTTGTCTTCATTCAG 58 39863866 39863886 GGAGATTGTGTAGTTCTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050391.1 ENSRNOG00000055061 ENSRNOT00000082166 3 1 1 74 5 163593752 163593775 GGAGACGTACAACAATCTATTGTC 60 163594672 163594691 TCTTGTTCCAAGACCTTCCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 2 1 1 68 15 52501656 52501674 TCTGAAGAGCTGTTGAGCC 60 52501706 52502272 CATCATAACTGCCTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032289.1 ENSRNOG00000053900 ENSRNOT00000091628 3 1 1 83 18 59815365 59815383 TGATTGGAGGTGTTGGGAG 59 59817053 59817071 TTTGTCTGGGTCAAGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050466.1 ENSRNOG00000059002 ENSRNOT00000086073 1 1 1 60 5 166262794 166262812 AAGCCTACCGAAGACACAG 59 166259303 166259321 GAATTGGGAAACCTCCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032393.1 ENSRNOG00000055190 ENSRNOT00000080879 1 1 1 88 18 63834728 63838947 TTGGCAGACTGAGGTTGAG 60 63834658 63834676 CATCCTTCCAGGGTCTGTG 60 Novel Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000084961 2 1 2 90 6 44731305 44731323 TACAGACTCCCACCATGGA 60 44731374 44732612 ATCCAGGAGAAAGACCATACAC 60 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 2 1 1 60 6 45023557 45024525 GGATTTGTGAGTCACTATCCAG 59 45024543 45024564 GAGTAACTGCTCTCAATTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050648.1 ENSRNOG00000059071 ENSRNOT00000089887 1 1 1 66 5 172176793 172176811 ACACAGTGAAGATGGAGCC 60 172176024 172176042 AGCCATTGGTGGTACAGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018504.1 ENSRNOG00000054268 ENSRNOT00000080169 2 1 1 80 15 62346561 62379362 CTGAAGACAAGAATTGGAAGTC 57 62379401 62379421 GGGACTGATGAATAAATGCAC 57 Novel Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 1 1 1 60 15 72057972 72078623 GTCAGTTATATCAGCCAGTCAC 59 72078643 72078662 ATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07002805.1 ENSRNOG00000056831 ENSRNOT00000078361 2 1 1 111 1 85574476 85574495 CAAGTCCATCTGTCCTACCC 60 85567970 85567988 GAAGAGGACCAGACAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032593.2 ENSRNOG00000057541 ENSRNOT00000080563 2 1 1 81 18 72876865 72877559 GACAGCTTGCGATTCTAGAC 59 72876803 72876821 CAGAATGCTGTCTGGATGC 59 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 1 2 2 84 6 64609021 64609039 AGAGGTGACAGTGCTTGAG 59 64593182 64608973 TGTCTTCCAGTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 2 2 2 88 6 64609021 64609039 AGAGGTGACAGTGCTTGAG 59 64593178 64608969 GTTGTGTCTTCCAGTGCTC 59 Novel Rattus norvegicus 81 AABR07032724.1 ENSRNOG00000053886 ENSRNOT00000077887 2 1 1 101 18 78289057 78289076 AGATAGGAAGCAGTGGTGTG 60 78288535 78288553 TCCAAGGCCTGTGTTACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 1 1 1 60 6 67771811 67771830 TTTCCTGGCAATTTAGACCT 57 67771851 67775149 TCATCAAGTGTAAGAGGTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07051376.1 ENSRNOG00000057465 ENSRNOT00000087557 1 1 1 60 3 7033039 7033059 AACCAACAACCATTGAGACTG 59 7033080 7033099 TCACAGCTTATACGATGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115341.2 ENSRNOG00000059168 ENSRNOT00000081056 2 1 1 96 3 9109353 9109371 TTACGGGAAGATTGGTGGA 58 9115109 9115127 AGTTCACAGGATTCCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064264.1 ENSRNOG00000059058 ENSRNOT00000090871 1 1 1 80 6 71837409 71837427 TCTATGGCCTGAGTGAGAC 58 71835333 71837366 AGTCTGAGGTAGCATCTTCC 59 Novel Rattus norvegicus 81 AABR07032758.1 ENSRNOG00000052976 ENSRNOT00000089151 2 1 1 82 18 80201038 80201057 TTAAACTTCCAGCTGATGCT 58 80197365 80200996 CTCTTACAGATAATCATGGGCT 58 Novel Rattus norvegicus 81 AABR07032787.1 ENSRNOG00000052546 ENSRNOT00000088794 1 1 1 80 18 82089109 82108783 GTAACTGTTGACCTCTACTGTC 58 82108823 82108842 TCTAGATGGACTCCATCCAC 58 Novel Rattus norvegicus 81 AABR07064635.1 ENSRNOG00000056583 ENSRNOT00000089798 3 1 1 88 6 88087807 88087825 TACAGCAACCTTCTCAGGC 60 88081237 88087759 AAGGAATGGCTGTAGATAGTCTC 60 Novel Rattus norvegicus 81 AABR07051515.2 ENSRNOG00000059518 ENSRNOT00000088402 2 1 1 91 3 14699895 14705331 GACTCACTGATTTGATGTGGC 60 14705384 14705402 GTCATTCTTCCACTGCGTC 59 Novel Rattus norvegicus 81 AABR07019437.7 ENSRNOG00000060778 ENSRNOT00000081262 3 1 1 105 15 105513079 105513097 CATTGGTTAGTGCACCAGC 60 105513165 105518751 ATGGTACCTTTCACATCCGG 60 Novel Rattus norvegicus 81 AABR07019437.4 ENSRNOG00000055566 ENSRNOT00000089537 3 1 1 137 15 105550870 105550889 TCTGGGTAGCAGATTTGCTC 60 105550989 105551927 GTAAGAGGATCGGGCAGAC 60 Novel Rattus norvegicus 81 AABR07033271.1 ENSRNOG00000052428 ENSRNOT00000089620 1 1 1 80 11 14545614 14545633 AGATAGAGCTTTCACTGGGA 58 14545676 14576108 AACACAGTAGCCTTTCGTC 58 Novel Rattus norvegicus 81 AABR07033484.1 ENSRNOG00000059738 ENSRNOT00000089854 2 1 1 60 11 23815817 23815836 ATTTGATCCATCCTGCAAGG 58 23796139 23796159 GCAAATTGACTGAAAGGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051882.2 ENSRNOG00000060195 ENSRNOT00000086466 3 1 1 90 3 25414326 25414493 CTCAGATGAACTTAACTGTGACAC 60 25414259 25414278 TCTGAGGTTTACTGGGATGC 60 Novel Rattus norvegicus 81 AC094784.1 ENSRNOG00000059931 ENSRNOT00000084426 3 1 1 123 11 30977551 30978838 CAGTCTTCGGTCTACAGAGAC 60 30978920 30978941 GGTCACAGTCTGTCTTTATCCT 60 Novel Rattus norvegicus 81 AABR07003310.2 ENSRNOG00000056203 ENSRNOT00000081118 1 1 1 80 1 105039507 105040920 CTTTACAACCAGGAGGAGAC 58 105040960 105040981 CAAGATTAGGCATATTTCTGCG 58 Novel Rattus norvegicus 81 AABR07065118.1 ENSRNOG00000057327 ENSRNOT00000091235 2 1 1 83 6 110719567 110720225 CCAAAGCAGACAGGTTTCAC 60 110720266 110720289 CTGAACTCAGGATCTCTAGAAGAG 60 Novel Rattus norvegicus 81 AABR07003310.1 ENSRNOG00000052766 ENSRNOT00000084269 2 1 1 64 1 105036254 105036272 TAAGCTTGGCAAGTATCGC 58 105036970 105036988 ACTTTCTCTGAGGACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033666.1 ENSRNOG00000055823 ENSRNOT00000085292 2 1 1 108 11 34313561 34313579 CTTCGAGGCTATGGAACTG 58 34310346 34310368 GGCTGAGCATATTCTAGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.1 ENSRNOG00000055422 ENSRNOT00000083960 3 1 1 83 6 110891034 110891968 AAGAGGAGTGCACTGATCC 59 110892015 110892033 ACCATCCATCCCTTGTGTC 59 Novel Rattus norvegicus 81 AABR07003310.3 ENSRNOG00000056597 ENSRNOT00000091414 3 1 1 80 1 105045463 105046161 TGGAGTCAGGAATGAAGGC 59 105046204 105046223 GAGAGGACGATGACTCTGTC 59 Novel Rattus norvegicus 81 AABR07065261.1 ENSRNOG00000054797 ENSRNOT00000092089 3 1 1 96 6 117645870 117645889 GGTATTGACGTGTCCTTGAC 59 117651868 117651887 CTCCATCACTAAGCTGTACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021199.1 ENSRNOG00000061752 ENSRNOT00000088390 3 1 1 85 13 60313722 60313742 TAATGGACTCCCTTCCTACCA 60 60313788 60314034 CATCTGCACCTTACAACACG 60 Novel Rattus norvegicus 81 AABR07065276.1 ENSRNOG00000056267 ENSRNOT00000080057 1 1 1 108 6 118718450 118732430 TTTGAAAGGGCCACTAAGAG 58 118737362 118737380 GCTGAGGCAGAATTAAGCA 58 Novel Rattus norvegicus 81 AABR07021293.1 ENSRNOG00000057047 ENSRNOT00000081122 2 1 1 64 13 64551465 64551485 TCGAGAGGATAATTCAGGTGC 60 64549152 64551442 AACATATTCCTTTGCACCAAGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07052347.1 ENSRNOG00000059316 ENSRNOT00000085686 1 1 1 84 3 48413340 48413358 CTGAGGGTATACCGCTGTC 59 48411522 48413293 GTATGGATGCACAAGCTCTC 59 Novel Rattus norvegicus 81 AABR07021357.1 ENSRNOG00000054544 ENSRNOT00000083880 2 1 1 139 13 67695064 67695083 CCCTGACTCTGATGAAATCC 58 67695185 67749219 AGATTGCCACATGTCTGTC 58 Novel Rattus norvegicus 81 AABR07003449.1 ENSRNOG00000051655 ENSRNOT00000089769 1 1 1 60 1 110026784 110028035 TCTCCATCAGTTGGAATGTCC 60 110028056 110028075 AAATCTGATTGGCAAGAGCT 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000088159 1 1 2 80 11 44736636 44753144 CTCCTGAAGAGAAAGCTGTG 58 44736575 44736596 CAATGACATCCCAAATGTTGAG 58 Novel Rattus norvegicus 81 AC098929.1 ENSRNOG00000060126 ENSRNOT00000086253 3 1 1 81 6 122728625 122729616 TTCCACAGCACCAATTACAG 59 122728563 122728584 GCAATTATTTCTTCCTAGGCCA 59 Novel Rattus norvegicus 81 AABR07052523.2 ENSRNOG00000060690 ENSRNOT00000086643 3 1 1 81 3 59393778 59393797 AATGAATGGACATGGTGCAG 59 59389455 59393736 CATGGCTGTTAATTTACGCTG 58 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000086316 2 1 2 80 1 118076228 118076249 GAAGAAACTGAGACCTAGAAGG 58 118076290 118076989 CACAGTGTAACAAGGCCTC 59 Novel Rattus norvegicus 81 AABR07065364.1 ENSRNOG00000061184 ENSRNOT00000083777 1 1 1 68 6 124247206 124247224 AGAGAAGAATCAGGTCGGG 59 124247725 124247743 TTGTGAACTGTAAGCTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021590.1 ENSRNOG00000051371 ENSRNOT00000081991 1 1 1 80 13 79710112 79712027 TTAAGTCAGCCTCTGAGCA 58 79710050 79710071 GTCCAGCAACTTTAGAGATGTC 59 Novel Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 3 1 1 60 11 64195357 64195378 CTGTAAACTACTACCGAAGGAC 58 64195399 64225618 CCCTTTGGGTAGGAGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052550.2 ENSRNOG00000051639 ENSRNOT00000089819 1 1 1 81 3 61093130 61099465 GGAAGAGAATGAATTTGAAGGC 58 61093070 61093091 TCTTCCATAGACTTCAACTCAG 57 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 3 3 3 80 6 125287309 125289661 ATATGACCGCCACAATTGC 59 125287247 125287267 CTGTCATCAATCCACTTCGTC 59 Novel Rattus norvegicus 81 AABR07072876.2 ENSRNOG00000061268 ENSRNOT00000085572 3 1 1 80 3 62279709 62279728 CTGATTAGCTGCTTGTCGTC 59 62279769 62282585 TTGGTATGAGACTCTGTAGCC 59 Novel Rattus norvegicus 81 AABR07021635.1 ENSRNOG00000057731 ENSRNOT00000084244 2 1 1 98 13 83108870 83110828 TTACACTATTGTTCGCCCG 58 83108790 83108808 GGAAGGAACTGGAACTCTC 57 Novel Rattus norvegicus 81 AABR07004061.1 ENSRNOG00000051782 ENSRNOT00000090893 2 1 1 80 1 123524626 123529077 AATGAAACAAGTCAAGTGTGGG 60 123524477 123524499 CTTAGGCTTGTAGATTGGATGAG 59 Novel Rattus norvegicus 81 AABR07004061.1 ENSRNOG00000051782 ENSRNOT00000090893 3 1 1 80 1 123529083 123529103 ACAACACAGGAAATGGTACAG 59 123524503 123524611 AATCCCTAGTCTCTGGGTG 58 Novel Rattus norvegicus 81 AC120076.1 ENSRNOG00000060422 ENSRNOT00000080870 1 1 1 80 11 76808375 76812603 CTCATTGGACTATTGAAGCGAG 59 76808316 76808336 GCCTAGAAGCTGACTAATTCG 59 Novel Rattus norvegicus 81 AABR07004100.1 ENSRNOG00000057921 ENSRNOT00000081060 2 1 1 80 1 124743487 124756083 ACAGGACTTTGATATAGGCCT 58 124743427 124743448 TGTAATCTTAGCACTTGGAAGG 58 Novel Rattus norvegicus 81 AABR07065504.1 ENSRNOG00000051387 ENSRNOT00000083887 1 1 1 84 6 132464332 132464995 CCTTCCGAAGAGGTTCCAG 60 132465043 132465061 GAAAGACTCCGTGCTTGTG 59 Novel Rattus norvegicus 81 AC115369.1 ENSRNOG00000056279 ENSRNOT00000082620 1 1 1 89 13 97920626 97920644 AGAAACATCTCGGATGGCC 60 97920697 97921745 GTCTTTCTCAGGGACCTCC 59 Novel Rattus norvegicus 81 AABR07021972.1 ENSRNOG00000061273 ENSRNOT00000080652 3 1 1 119 13 101364814 101364832 ACACTTTGGTGCTCTCCTC 60 101364915 101371465 GGAATGTTTCCTCCCAAGC 59 Novel Rattus norvegicus 81 AABR07034991.1 ENSRNOG00000057612 ENSRNOT00000090701 2 1 1 80 12 2938842 2940284 GGTTGGACTAAACTCCCTG 58 2938780 2938799 TAACAGTTTCCACTGTCGAG 58 Novel Rattus norvegicus 81 AABR07065602.2 ENSRNOG00000056047 ENSRNOT00000087717 3 1 1 113 6 137122255 137122273 CAGGTCTCCTCCAAGTGTC 59 137121517 137121535 GGCAGAGTTCTCAACTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065766.1 ENSRNOG00000054462 ENSRNOT00000080005 1 1 1 102 6 140400188 140400290 TCCAATCAGTGTCCTGTCC 59 140400104 140400122 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07024468.1 ENSRNOG00000060607 ENSRNOT00000089982 2 1 1 122 16 535766 569367 CCTATGAAGGCCTTATAGATTCAC 59 535667 535685 GACCCGAAAGAGATTTCCC 58 Novel Rattus norvegicus 81 AABR07024473.1 ENSRNOG00000051956 ENSRNOT00000082788 2 1 1 152 16 624614 624632 AAATCGAACCGTGGTTTGC 60 618595 618615 CCTACCTACATGTGGAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000078698 2 1 2 80 1 141944959 141944977 TCAGCTCAAGGACGATGTC 60 141945021 141945852 TTCTTTGACCTGTGCTGCT 60 Novel Rattus norvegicus 81 AABR07024542.1 ENSRNOG00000058571 ENSRNOT00000084733 1 1 1 86 16 4439789 4439809 AGCCACTCTTAAAGAAAGCTG 59 4439857 4443036 TTCTGACAGCTGTGAAAGC 58 Novel Rattus norvegicus 81 AABR07004421.1 ENSRNOG00000061327 ENSRNOT00000088363 3 1 1 86 1 141964145 141964164 CTCTAGGAGGTCTGGTTGAG 59 141961915 141964096 TTTGCCACCTCTAGCTCTC 59 Novel Rattus norvegicus 81 AC114460.2 ENSRNOG00000058477 ENSRNOT00000078130 1 1 1 70 1 142134733 142134751 TTGGATGAACCTCGCTCAG 60 142134505 142134525 GTGTAGTCTGACACAAATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 2 1 1 194 12 13450171 13450189 GCACCTGACAATTCTTGGG 59 13450460 13450813 GAATTTCTTCGAGTACACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066470.1 ENSRNOG00000054362 ENSRNOT00000087249 3 1 1 147 9 9087118 9087136 TCAGCAGGTTGGGTATGTG 60 9104434 9104452 TCCTCCTTGTGCCTATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004530.1 ENSRNOG00000056445 ENSRNOT00000084442 1 1 1 81 1 147157922 147158114 TAAAGGCCTTGGAATTGCT 57 147157859 147157879 CAAATTCTGCAAGGTCATGAG 58 Novel Rattus norvegicus 81 AABR07066636.1 ENSRNOG00000052783 ENSRNOT00000085782 3 1 1 80 9 12068262 12068867 AGCATTGACAGGAACATCTC 58 12068910 12068928 GGGCATGTTCAGGATATCC 58 Novel Rattus norvegicus 81 AABR07024721.1 ENSRNOG00000056527 ENSRNOT00000077902 2 1 1 83 16 12592271 12592290 ATGGCCATTTACTCAAAGGG 58 12592082 12592226 GCAGAAACCTTCTCATCCAG 59 Novel Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 1 1 1 65 3 109814065 109814083 GTCCTGCTGGGATTAGTGG 60 109811961 109814036 GCAGAGACAAAGCTGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024724.1 ENSRNOG00000053759 ENSRNOT00000087993 1 1 1 80 16 12713529 12715061 TGCTGTTTGTGAGGTATGC 59 12713467 12713485 CCAAGAAGCTACAGAGGGT 59 Novel Rattus norvegicus 81 AABR07024724.1 ENSRNOG00000053759 ENSRNOT00000087993 3 1 1 81 16 12713529 12715062 CTGCTGTTTGTGAGGTATGC 60 12713467 12713485 CCAAGAAGCTACAGAGGGT 59 Novel Rattus norvegicus 81 AABR07024734.1 ENSRNOG00000055616 ENSRNOT00000085284 2 1 1 84 16 13013410 13014953 TGCTGTTTGTGAGGTATGC 59 13015000 13015019 GTTTCCAGGAAGCTACAGAG 58 Novel Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 2 1 1 65 1 153456499 153457372 GGTCCAAGACCTGGAAGAG 59 153457401 153457419 TTATTTGGTAGATGGGCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035779.1 ENSRNOG00000055147 ENSRNOT00000090947 2 1 1 80 12 22315484 22317709 ACTTCAAGGTACAGGAGCAG 60 22317751 22317770 TGCAGCGAATATTGTTGTGG 60 Novel Rattus norvegicus 81 AABR07053717.2 ENSRNOG00000058520 ENSRNOT00000087780 2 1 1 80 3 122394594 122394612 GTTCAGTTTCACAGTCGGG 59 122393044 122394551 TCAGAAGAGGACCTGTATCC 58 Novel Rattus norvegicus 81 AABR07053767.1 ENSRNOG00000053376 ENSRNOT00000088660 2 1 1 60 3 125025761 125025780 CATCAGTGCTTACACAGCTG 59 125023194 125025738 TTGTGTCCTCACTTTGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000081199,ENSRNOT00000089862 1 2 3 67 12 22360251 22360269 CAGAATTGAGTGTGGCTGC 60 22360716 22360734 TAGGAATCCAGGTCTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000084705 2 1 3 91 12 22357215 22357233 CATCCAGTGCCAGAATTCC 59 22357288 22357706 ACTGCAGAGTGATTTCGAC 58 Novel Rattus norvegicus 81 AABR07066871.1 ENSRNOG00000052332 ENSRNOT00000091769 3 1 1 92 9 20463857 20463875 GGCCTTGGTTTCTTAGACC 58 20463931 20466459 GGTCAGCTTCAAGAGACTC 58 Novel Rattus norvegicus 81 AABR07004888.1 ENSRNOG00000056725 ENSRNOT00000082638 1 1 1 76 1 166120707 166120726 GCTATCACCATACCCTTCCC 60 166119890 166119908 TAGACCCACATGACAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025023.1 ENSRNOG00000055076 ENSRNOT00000082578 2 1 1 83 16 26081426 26098257 TAACGACAATGGTGTGCTG 59 26081361 26081379 ATGAAGACGAGACCTCCTG 59 Novel Rattus norvegicus 81 AABR07005032.1 ENSRNOG00000057739 ENSRNOT00000087078 3 1 1 81 1 176622004 176622816 CAACTGCTCTGGAGATATACC 58 176622859 176622877 GTACGGAATAGCTGCAAGG 58 Novel Rattus norvegicus 81 AABR07025178.1 ENSRNOG00000053455 ENSRNOT00000090846 3 1 1 147 16 30411271 30412654 TTCTTTCGAGACTCCTCCAG 59 30412763 30412782 GAAGTACATGGAAGGCTTGG 59 Novel Rattus norvegicus 81 AABR07067006.1 ENSRNOG00000059681 ENSRNOT00000078230 1 1 1 122 9 26061336 26061453 AGAGCACCACAGTTAAAGGT 59 26061538 26061556 TCACAGACATCCATGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 3 1 1 75 3 130601387 130601408 CTAGGAATGTTTATCCATGGGA 58 130594904 130601352 TTATTCTTTGACAACGGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025303.1 ENSRNOG00000059212 ENSRNOT00000079403 3 1 1 82 16 32656087 32656106 CCACCACATCTCAGAAAGTG 59 32656148 32656307 CCATTAAATCTGGAACCAACAC 58 Novel Rattus norvegicus 81 AABR07005596.1 ENSRNOG00000059503 ENSRNOT00000091780 3 1 1 64 1 189798282 189798300 TCAAGAATCGGACTCCTCG 59 189819342 189819360 GTGTAGTCTAGCCTGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 1 1 1 97 16 51791908 51791926 TCTTCTACCACACCAACCA 58 51791096 51791847 TTTGCAGAGACATTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AC111428.1 ENSRNOG00000055430 ENSRNOT00000082569 2 1 1 82 3 148057935 148061782 TGGCTCTGAACTACAACCTC 60 148061827 148061845 ATTTCCCAGGTCAGGTTCC 59 Novel Rattus norvegicus 81 AABR07067404.1 ENSRNOG00000052867 ENSRNOT00000079214 2 1 1 84 9 43495254 43495277 CCTCTACATCTACTGTATGTTCTC 58 43495318 43495445 GGATACGCAGTAGATGTAGAG 57 Novel Rattus norvegicus 81 AABR07067404.2 ENSRNOG00000057258 ENSRNOT00000081049 3 1 1 80 9 43496419 43496440 ACATTCTACTGTATGTTCGTCG 58 43496477 43496736 AGGATACACAGTAGATGTAGAGG 59 Novel Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 3 1 1 82 12 36812690 36812708 TTACTGGGCTGATGGATGG 59 36812753 36813671 GTACAGGATAGAACGAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026012.1 ENSRNOG00000060807 ENSRNOT00000084522 2 1 1 66 16 58938473 58938491 GACTTAGTGGCTGTGGAGG 60 58937766 58937784 AAACCAATTCTGTCTGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036376.1 ENSRNOG00000060770 ENSRNOT00000087812 3 1 1 66 12 40971021 40971039 AATTAAGGCTGCAGCAAGC 60 40978289 40978307 AGATAAGTGAGCTTCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026125.1 ENSRNOG00000053207 ENSRNOT00000082833 3 1 1 92 16 64984119 64984138 ATGGACTTGGATAGGACTGG 59 64982386 64984064 CAAAGAAGCCACCTTTGCA 59 Novel Rattus norvegicus 81 AABR07054562.1 ENSRNOG00000053747 ENSRNOT00000078224 1 1 1 81 3 160585262 160585280 TCACAAGGTGGAGTGAAGG 59 160585323 160587015 CATCCCTAGGATTGGCTAGAG 59 Novel Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 1 1 1 62 3 160964930 160972965 GAGGCTTGGAAATGGAGAG 58 160972991 160973009 AGTGCTCTTGACTGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054565.1 ENSRNOG00000053069 ENSRNOT00000079564 2 1 1 81 3 160993357 161013962 GAAGAGGCAGGAGGAAGAG 59 161014004 161014025 TTGGGTAGTGAATGTTCTTCCT 60 Novel Rattus norvegicus 81 AABR07036507.1 ENSRNOG00000056419 ENSRNOT00000088173 3 1 1 105 12 45482674 45482693 TGTTTATCCTGTGACTGACC 57 45482758 45487384 CTGATCCGCCTAATTAATTCTG 57 Novel Rattus norvegicus 81 AABR07005985.2 ENSRNOG00000059125 ENSRNOT00000089947 3 1 1 111 1 212146436 212146455 CAGCTCACTGAAATTGTCCC 59 212146528 212148515 GATTCTGTCAGACGTGTCTG 58 Novel Rattus norvegicus 81 AABR07026281.1 ENSRNOG00000054991 ENSRNOT00000083606 2 1 1 86 16 70487186 70487204 TCATCTCTTCCTACGCAGG 59 70484463 70487136 AGAAAGGTAGCTCGCAGAG 59 Novel Rattus norvegicus 81 AABR07054619.1 ENSRNOG00000060501 ENSRNOT00000078209 2 1 1 81 3 164625948 164625967 TGGCCTAGGGTTTGATAGAC 59 164626009 164626665 TTTCATTTCCCTGTCATCTGC 59 Novel Rattus norvegicus 81 AABR07026483.1 ENSRNOG00000054984 ENSRNOT00000085058 1 1 1 80 16 78273344 78273362 GCAATTGAGCTGAAGTCCA 59 78273406 78340657 TCCTTGGGTCAAGACAGAG 59 Novel Rattus norvegicus 81 AC131024.2 ENSRNOG00000058055 ENSRNOT00000086662 3 1 1 69 3 170332311 170334187 GGCTTCTATTGGATATGTCCT 57 170332262 170332282 TTTAGATTGATCTGCGTCCTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07022162.1 ENSRNOG00000053159 ENSRNOT00000088762 2 1 1 80 13 110479890 110480843 GCTGAACAGAAGTTTCTGGC 60 110479829 110479848 ACTGCTCTCACAGAACTCTG 60 Novel Rattus norvegicus 81 AABR07022202.1 ENSRNOG00000054878 ENSRNOT00000082516 2 1 1 165 13 112760483 112761227 TCACAGAAGATGGTGAAATGG 58 112761352 112761372 TGCAGGAAACAATTAAGTGGG 59 Novel Rattus norvegicus 81 AABR07022202.1 ENSRNOG00000054878 ENSRNOT00000082516 3 1 1 166 13 112760482 112761227 CTCACAGAAGATGGTGAAATGG 59 112761352 112761372 TGCAGGAAACAATTAAGTGGG 59 Novel Rattus norvegicus 81 AABR07068086.1 ENSRNOG00000055414 ENSRNOT00000088698 1 1 1 80 9 83313378 83313399 CCATGAAAGGGAAATTCTTGTC 58 83311870 83313338 ACTTCCTTGGAGTTTAGTGG 57 Novel Rattus norvegicus 81 AABR07026492.1 ENSRNOG00000060128 ENSRNOT00000081210 3 1 1 63 16 78903781 78903799 AAAGCAGTCAAGGAACCAG 58 78880317 78903755 ACACAGGACCTAAATTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068094.2 ENSRNOG00000055588 ENSRNOT00000085866 2 1 1 80 9 83420139 83420158 CGTTCAGAAGGAGAGGAGAG 59 83419337 83420097 TTCCTACCGAACCAAGACAG 60 Novel Rattus norvegicus 81 AABR07037899.1 ENSRNOG00000056843 ENSRNOT00000091339 1 1 1 85 X 35198780 35198798 TGACCCAGATATTGTGGGA 58 35197115 35198733 CTGGTATTTCCAAATTGGGAG 57 Novel Rattus norvegicus 81 AABR07055162.1 ENSRNOG00000052669 ENSRNOT00000089774 1 1 1 91 7 241064 245331 ATAGTTCCTACCGCAACAC 57 240991 241010 TTGTCTGTTCTCATTCAGCA 58 Novel Rattus norvegicus 81 AABR07055191.1 ENSRNOG00000052514 ENSRNOT00000078281 2 1 1 81 7 450274 450612 GTCTGACAAGAGATGAAATTGC 58 453651 453670 ATACTCCTTTCCATGGTCCT 58 Novel Rattus norvegicus 81 AABR07026534.3 ENSRNOG00000056791 ENSRNOT00000087854 1 1 1 61 16 81262041 81262059 AACAAGACAGCTTGAGCCA 60 81265336 81265354 CCTCGGCAAGAGTCTAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068203.1 ENSRNOG00000054773 ENSRNOT00000083335 2 1 1 84 9 90678602 90678620 CTACATGGTCAGTGCATGG 58 90606941 90678555 GACTCCATTCTGGGTTTCTG 58 Novel Rattus norvegicus 81 AABR07055333.1 ENSRNOG00000060440 ENSRNOT00000077500 1 1 1 96 7 1587159 1587177 AGAATCCCGATTCTACGCA 59 1587236 1591324 GTTCATTAATGGACCTGCCT 58 Novel Rattus norvegicus 81 AABR07055801.1 ENSRNOG00000060675 ENSRNOT00000079790 2 1 1 167 7 10168415 10169144 TTCAGCAACCTCTACGTGG 60 10169274 10169293 GTGTCCTCCATACAGGATCC 59 Novel Rattus norvegicus 81 AC095563.2 ENSRNOG00000059544 ENSRNOT00000083435 3 1 1 73 9 95362215 95362233 ATGCGCATTACTTCATGCG 60 95383871 95383889 ACTCCATAAGGGCCTTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068308.1 ENSRNOG00000056453 ENSRNOT00000087447 2 1 1 60 9 97539926 97539945 GATCTTCTGCAAGGTTCCAC 59 97538729 97538749 ATCACTGATCACTGGATTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026596.3 ENSRNOG00000060353 ENSRNOT00000082350 3 1 1 84 16 85391119 85392616 AAAGCCAAGTGTTTCAGGG 59 85391053 85391072 GAAAGCAGCAAGTACCTCAG 59 Novel Rattus norvegicus 81 AABR07026614.1 ENSRNOG00000056366 ENSRNOT00000079039 2 1 1 122 16 86537922 86538760 AAAGGTAGGAGGTGTCAGC 59 86538846 86538864 TACCTGAGACGTCCATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026623.1 ENSRNOG00000052556 ENSRNOT00000085748 3 1 1 60 16 86818859 86818877 CTGAGTCCGTTACTCTGCA 59 86818899 86829775 GGCATAGTTTCAACACTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 1 1 1 71 X 77956553 77957195 GCCCTTCATCTCTGAATGTG 59 77956501 77956519 TACCAAGAGGTCACTGGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026936.3 ENSRNOG00000054793 ENSRNOT00000086021 3 1 1 78 17 5656256 5656274 GACCCTCCAACCAGAAGTC 60 5660638 5660656 CCATGTGACATCTCCTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056415.2 ENSRNOG00000058322 ENSRNOT00000087908 3 1 1 83 7 24400119 24403938 CCATTTCTAAGAGACAACATCG 57 24403979 24404000 TATGAACCTTACTTCTGCTCAG 58 Novel Rattus norvegicus 81 AABR07026969.1 ENSRNOG00000053948 ENSRNOT00000090380 1 1 1 86 17 7611045 7611066 GTACTATAACCCAGTCACAGAC 58 7607109 7610998 TGAATCACAGCAACACCTG 58 Novel Rattus norvegicus 81 AABR07068614.1 ENSRNOG00000060213 ENSRNOT00000080518 2 1 1 82 9 112181730 112206028 TGCGAATACTCTGTAGAGATATGG 60 112181671 112181689 GGATAAGAGGCAGGCTCAG 60 Novel Rattus norvegicus 81 AABR07026984.1 ENSRNOG00000052412 ENSRNOT00000081442 1 1 1 80 17 8438908 8440242 TACAGTCTTTGGAGAAGGTGAG 60 8440280 8440301 GTAGACCATCGTTGAGATAGCA 60 Novel Rattus norvegicus 81 AABR07056465.1 ENSRNOG00000058036 ENSRNOT00000087421 1 1 1 80 7 26181698 26186143 TACCTCTAGAAGTTCAAAGTCCC 59 26186181 26186201 ACAACAGCCTTTCTTTCTTCC 59 Novel Rattus norvegicus 81 AABR07042662.1 ENSRNOG00000052666 ENSRNOT00000079178 2 1 1 80 19 2085412 2085430 GTGACTGCTTCAGATCCCT 59 2088132 2088152 GACATTCAGTCTCTGTCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068810.1 ENSRNOG00000059433 ENSRNOT00000078089 3 1 1 80 9 120345169 120349511 AGTTGTGATGTAGGAAACAGC 59 120349552 120349571 GAATGACGGAATATGCACGG 60 Novel Rattus norvegicus 81 AABR07056605.1 ENSRNOG00000061490 ENSRNOT00000077675 3 1 1 125 7 31988090 31988109 TTTCAAGCTCTGTTGTGGGA 60 31988196 32049205 TTGTCAAACCTTTCAACGGG 59 Novel Rattus norvegicus 81 AC096317.1 ENSRNOG00000055885 ENSRNOT00000077734 1 1 1 119 1 261923640 261923659 CTGGGCACATGTAGTAAGGA 59 261922751 261923558 GATGAGTCCCTTTCGAGCA 60 Novel Rattus norvegicus 81 AABR07027116.1 ENSRNOG00000059028 ENSRNOT00000091406 2 1 1 83 17 14791666 14791684 GCTAGTCCCTCACAGACTG 59 14791731 14792267 CTATGCCCTGCTCTTCCTC 60 Novel Rattus norvegicus 81 AABR07069211.1 ENSRNOG00000054478 ENSRNOT00000083731 2 1 1 70 8 12459038 12459056 ATGCCCAGACTGTTCAGAC 60 12457448 12457467 TACTTCTTGGAAGCTCAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027268.1 ENSRNOG00000054163 ENSRNOT00000090770 1 1 1 80 17 22097843 22097863 CTTGAGAAGCTCAGAACTTCC 59 22097904 22098744 AGATGAATGGGTGACAAGTG 58 Novel Rattus norvegicus 81 AABR07027272.1 ENSRNOG00000051772 ENSRNOT00000089995 3 1 1 91 17 22263056 22263074 GTCACCTTCCTCAGTAAGC 58 22253642 22263001 TTGACTGACAACAGAAGCA 57 Novel Rattus norvegicus 81 AABR07027287.1 ENSRNOG00000051834 ENSRNOT00000086273 1 1 1 90 17 22983150 22984073 AGAACAATACACCACTTGGG 58 22983079 22983099 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07043031.3 ENSRNOG00000059345 ENSRNOT00000081723 1 1 1 80 19 18024604 18043702 AACTGGGTAATTGCGAGAC 58 18024542 18024563 TGCTTATCTACTGTCTGAAGAG 57 Novel Rattus norvegicus 81 AABR07069454.1 ENSRNOG00000059163 ENSRNOT00000079540 3 1 1 81 8 23178283 23179277 GGCAGAATCTTAAGCAACCA 59 23179320 23179339 GGTCGTGGTCAAGAATTTGG 60 Novel Rattus norvegicus 81 AABR07057146.1 ENSRNOG00000052524 ENSRNOT00000086704 2 1 1 107 7 57736568 57737952 TTGTATTCCTGTGAGAGTCCA 59 57736481 57736499 TCTTCTCTTCCCATTGGCT 58 Novel Rattus norvegicus 81 AABR07027390.2 ENSRNOG00000056672 ENSRNOT00000092082 3 1 1 77 17 27842348 27842369 CACAGTGTTTCATAGAAACCTG 58 27849428 27849447 TCATCTTCCTCCTTCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043108.1 ENSRNOG00000057049 ENSRNOT00000078652 3 1 1 93 19 21619379 21619397 TTCATTTCAAGAGGCAGGC 59 21619453 21623410 CTCTGTCCAGCCTACTAGAG 59 Novel Rattus norvegicus 81 AC111781.1 ENSRNOG00000053126 ENSRNOT00000090710 2 1 1 60 8 36397143 36397162 TCTGGTGGAGATGAGAAGAC 59 36397102 36397123 TTGAGATAAGGTCTGATAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027478.3 ENSRNOG00000053076 ENSRNOT00000087967 3 1 1 80 17 33084324 33085399 AAACACAAGTAAGAGCAGAGG 58 33085439 33085459 GAGGCTTCTTATTCTGACTGG 58 Novel Rattus norvegicus 81 AABR07057382.1 ENSRNOG00000052935 ENSRNOT00000080127 1 1 1 87 7 68891993 68892012 GGCTAACCGACTTTGTTCTC 59 68892062 68926517 AATCTTTCTCCCGGGTGTG 60 Novel Rattus norvegicus 81 AABR07057415.2 ENSRNOG00000056418 ENSRNOT00000087453 2 1 1 91 7 70151933 70152621 CTCCTTCACAGAGCCAGTC 60 70151860 70151880 TAAATCCAAATGGCAGTTGGC 60 Novel Rattus norvegicus 81 AABR07043525.1 ENSRNOG00000055482 ENSRNOT00000088267 1 1 1 81 19 29169403 29169422 TTTCTCGATCTTGGAGAGGA 58 29137185 29169359 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000088664 1 1 2 88 17 37911579 37911598 AATTACAAGCAGAAACGCCT 59 37911643 37912744 CTTGATATTTCTAACCTCTCAGCAG 60 Novel Rattus norvegicus 81 AABR07069821.1 ENSRNOG00000061154 ENSRNOT00000081200 3 1 1 80 8 40902668 40903646 AAGCAACATCTGGATAACACC 59 40902608 40902627 ATTGCTGTTTCTCCTCTAGC 58 Novel Rattus norvegicus 81 AABR07043698.1 ENSRNOG00000054321 ENSRNOT00000084956 3 1 1 94 19 36126060 36126609 CTTCCTTCTAGGTACTGTGACTC 60 36125988 36126006 CTATGGGTCTTCCTGGTGC 60 Novel Rattus norvegicus 81 AABR07057590.1 ENSRNOG00000061701 ENSRNOT00000082015 3 1 1 90 7 79455645 79456888 AGCACATTGAAGAACGAGAG 58 79455574 79455592 CTGTTCCCTCTCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 1 1 1 60 7 80270624 80270645 GTTGTACATTCACAAGTCTCAG 57 80270666 80283148 CATCAATTACACCGGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073391.1 ENSRNOG00000058361 ENSRNOT00000078268 1 1 1 103 8 46501109 46502492 CTCAGCATCGAAGATAGACAC 58 46503405 46503423 ATCCAAGTACAGGGACTGC 59 Novel Rattus norvegicus 81 AABR07073391.1 ENSRNOG00000058361 ENSRNOT00000078268 2 1 1 105 8 46501109 46502492 CTCAGCATCGAAGATAGACAC 58 46503406 46503425 AGATCCAAGTACAGGGACTG 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 1 2 2 80 19 38366016 38366034 CCAGTGAGACCAAGAAGAC 58 38365660 38365975 CTGTAACATTCAGAACGATGAC 58 Novel Rattus norvegicus 81 AABR07029111.2 ENSRNOG00000056145 ENSRNOT00000077595 3 1 1 84 10 7871856 7871875 TTGACATCGTGAAGGTTGTC 59 7871920 7880165 GAAGTCAAGAGTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 3 1 1 64 X 108894002 108894024 GATGTGGAAAGCATTATGGAGAG 60 108894048 108894891 AACCACCTGCAAATTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040797.1 ENSRNOG00000061692 ENSRNOT00000088702 1 1 1 80 X 110482734 110484083 GCTTTGTACAAGTTGGAGAC 57 110482673 110482692 TTTGTAATGACCAAGAGCCT 57 Novel Rattus norvegicus 81 AABR07040797.1 ENSRNOG00000061692 ENSRNOT00000088702 3 1 1 80 X 110482731 110484082 CTTTGTACAAGTTGGAGACCTG 59 110482672 110482692 CTTTGTAATGACCAAGAGCCT 58 Novel Rattus norvegicus 81 AABR07029218.1 ENSRNOG00000054167 ENSRNOT00000082397 3 1 1 87 10 15837097 15837115 TTCCAGGAGCAGTTCAAGG 60 15837163 15838247 TGTGAAAGAATCCTTCCAAAGC 60 Novel Rattus norvegicus 81 AABR07041096.1 ENSRNOG00000054795 ENSRNOT00000082683 1 1 1 82 X 119200635 119200653 TTATGGCTGCTTTGAGCTC 58 119198968 119200592 GGAAATTTCTTTGTCCTTCTCC 58 Novel Rattus norvegicus 81 AABR07058134.1 ENSRNOG00000055252 ENSRNOT00000089725 2 1 1 80 7 101983836 101998435 GTAGTCATAGGAGACCTGGG 58 101998478 101998496 TGGTGACATGTACACATGC 58 Novel Rattus norvegicus 81 AABR07041316.1 ENSRNOG00000054068 ENSRNOT00000085411 2 1 1 81 X 126062962 126117065 TACATACCTTAAAGGCTTGCTG 59 126117101 126117125 CCTTATTATTTATGCAGAGGACCTG 60 Novel Rattus norvegicus 81 AABR07007717.3 ENSRNOG00000060525 ENSRNOT00000090546 2 1 1 80 2 25535833 25536870 CCAGTGGATAGATCTCCGAG 59 25536913 25536931 TGATGACGATCGGACTTCC 59 Novel Rattus norvegicus 81 AABR07058240.1 ENSRNOG00000053987 ENSRNOT00000087433 3 1 1 60 7 106055588 106055607 TCCAAACAGATGTTGACCCT 59 106054606 106054626 TGGATCTCTTCCAAGTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058332.1 ENSRNOG00000058554 ENSRNOT00000084008 3 1 1 80 7 110624348 110673490 GACTCAAGAACATCAGAAGCA 58 110673530 110673550 AGGCATCTTAGATGAAGGGAG 59 Novel Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 3 1 1 67 X 139471810 139473963 AAAGAGTTGGAGAGCAGGT 59 139473993 139474012 GTCTTGGTGACTTACCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029573.2 ENSRNOG00000057579 ENSRNOT00000078755 3 1 1 92 10 35210847 35213616 AACCAACGCTGATCATGAG 58 35210773 35210791 TATCCTCTGCTGGACTCCT 59 Novel Rattus norvegicus 81 AABR07041794.1 ENSRNOG00000052271 ENSRNOT00000088248 1 1 1 60 X 140171769 140171787 AGTTACCCTCAAGGAACCC 59 140171810 140171829 CGTATTCCCATTGCTTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058420.1 ENSRNOG00000056933 ENSRNOT00000088860 1 1 1 90 7 115577725 115587961 CACTCAGGAAGACCACTCC 59 115577653 115577671 AGTCTTCTCTGCCAGTGAG 59 Novel Rattus norvegicus 81 AC127919.1 ENSRNOG00000054996 ENSRNOT00000089246 1 1 1 80 10 40727285 40727304 TCACAAATCCTGATTTGCCC 59 40727346 40728521 ACAAGATCATTGAACCGCTG 59 Novel Rattus norvegicus 81 AC127919.1 ENSRNOG00000054996 ENSRNOT00000089246 2 1 1 80 10 40727286 40727305 CACAAATCCTGATTTGCCCT 59 40727346 40728522 TACAAGATCATTGAACCGCTG 59 Novel Rattus norvegicus 81 AABR07029634.4 ENSRNOG00000057177 ENSRNOT00000089816 2 1 1 94 10 41816369 41816391 CCCAAATATCAGGAAAGAGATGG 59 41795055 41816315 TCTTGGCATCCTGCTACAG 60 Novel Rattus norvegicus 81 AC095267.2 ENSRNOG00000055050 ENSRNOT00000077315 1 1 1 77 X 156235690 156235708 AGAAGCTACCAAGTGGTCC 59 156235958 156235976 TCAGGAAAGGCACCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027961.1 ENSRNOG00000058818 ENSRNOT00000085858 3 1 1 81 17 51105081 51105100 AAGCTTTGTACTTGAGCCAG 59 51105144 51112693 GCCAGAGACCTACAAACCA 59 Novel Rattus norvegicus 81 AABR07058647.1 ENSRNOG00000054074 ENSRNOT00000081985 1 1 1 80 7 129595024 129595042 TGAAGAGACCTGTTGGAGC 59 129587201 129594980 TAGCACAGGTGCTTGTCTC 60 Novel Rattus norvegicus 81 AABR07058656.1 ENSRNOG00000053803 ENSRNOT00000080276 2 1 1 91 7 129842307 129842325 TCTTCTTGTTCTGCAGCTC 58 129855856 129855874 CACTGATACTAGCCCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044418.2 ENSRNOG00000060090 ENSRNOT00000084566 1 1 1 81 20 5314713 5314731 TCTTCAGGGATCTCTGGGT 59 5314545 5314563 TCCTGATTTCCCAGACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028055.1 ENSRNOG00000059796 ENSRNOT00000090292 2 1 1 81 17 54937089 54940855 TGAAGTGAAGGTCACAGGA 58 54940900 54940918 TGTTCACAGTGGCAAAGAC 59 Novel Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383,ENSRNOT00000085713 2 2 2 80 4 5722469 5723891 CTACCAAGTGGCCTATACG 57 5722407 5722426 ACTTAAAGACCACCTGTTCC 58 Novel Rattus norvegicus 81 AABR07044668.1 ENSRNOG00000055480 ENSRNOT00000086314 3 1 1 76 20 16531395 16531415 TCACTCTTGATAGTCAGCTGG 59 16636031 16636049 ACAATGGTAGCTGGTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059499.1 ENSRNOG00000058022 ENSRNOT00000081034 1 1 1 80 4 22048280 22048300 TTAAGGTTCCACAAAGACAGC 59 22048341 22068928 CAGATCTTCCTCTGCATTCC 58 Novel Rattus norvegicus 81 AABR07028469.2 ENSRNOG00000051853 ENSRNOT00000084039 3 1 1 84 17 71451027 71451047 TAATCAGCTTCTCAAGGACAG 58 71451093 71522293 CTTTAGTGCCAACCTTCCT 57 Novel Rattus norvegicus 81 AABR07008066.3 ENSRNOG00000056624 ENSRNOT00000085890 3 1 1 80 2 41528214 41528234 AAAGAACTGATGAAGCCACAC 59 41528276 41528887 GCTCTGATCACTCACTTGC 59 Novel Rattus norvegicus 81 AC094253.1 ENSRNOG00000059771 ENSRNOT00000085697 1 1 1 94 4 29027383 29027401 TGACTTATACGGTGCCCTG 59 29027456 29047491 CAGTCGTTCCTGTATAATGCAG 59 Novel Rattus norvegicus 81 AABR07028513.2 ENSRNOG00000054192 ENSRNOT00000082986 3 1 1 84 17 73116026 73118335 GGGACTACATGAAGCTTCTG 58 73118382 73118400 AGATTATGCTCATGGCCCA 59 Novel Rattus norvegicus 81 AABR07072979.1 ENSRNOG00000056814 ENSRNOT00000077829 1 1 1 80 4 31989024 31989044 TCATTTCTCAACATGGACAGC 59 31989086 32002538 CCATCCTGCGAAGAAACTC 59 Novel Rattus norvegicus 81 AABR07044799.1 ENSRNOG00000051810 ENSRNOT00000090124 1 1 1 80 20 20982170 20982192 GGATAATCAACCAATCTGTCCAC 60 20980929 20982131 AAATAGGCTCCTTCGTTCCC 60 Novel Rattus norvegicus 81 AABR07044799.1 ENSRNOG00000051810 ENSRNOT00000090124 3 1 1 81 20 20982172 20982193 AGGATAATCAACCAATCTGTCC 58 20980929 20982130 AAATAGGCTCCTTCGTTCC 57 Novel Rattus norvegicus 81 AABR07028534.1 ENSRNOG00000059907 ENSRNOT00000081693 3 1 1 80 17 74003717 74004574 TCAAGTTAGTAACCTCGGGA 58 74004615 74004635 ACCGTATACTCACCTCATAGG 58 Novel Rattus norvegicus 81 AABR07044820.2 ENSRNOG00000059723 ENSRNOT00000081132 3 1 1 80 20 22199961 22201930 AAACCTATGAATTGGCTCTGAG 59 22199902 22199920 AATACTGCCCTCATCTTGC 58 Novel Rattus norvegicus 81 AABR07028691.2 ENSRNOG00000056948 ENSRNOT00000092155 1 1 1 60 17 81443970 81443990 CAAATGCTCAACTCATGACTC 58 81442727 81442746 TTGTAGGGCTATACCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059875.2 ENSRNOG00000054496 ENSRNOT00000091342 1 1 1 81 4 39644734 39644752 AAACAGGGAATGTGTTGCC 59 39644588 39644689 GTGACAGATGGCAGTTTGG 59 Novel Rattus norvegicus 81 AABR07059876.1 ENSRNOG00000057613 ENSRNOT00000085398 2 1 1 86 4 39657226 39657247 GCTCTTGTTTGATTTGTAGACC 58 39654685 39654704 GCAGTGTTTGAATCACAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028793.1 ENSRNOG00000056309 ENSRNOT00000083259 1 1 1 80 17 86593652 86595012 GAAACCTAAGCTTCAGCTCTC 59 86593592 86593610 CAGGATGCAGTTGATGGAG 58 Novel Rattus norvegicus 81 AABR07028793.1 ENSRNOG00000056309 ENSRNOT00000083259 2 1 1 89 17 86593652 86595012 GAAACCTAAGCTTCAGCTCTC 59 86593583 86593601 TTCAAATGGCAGGATGCAG 59 Novel Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 3 1 1 60 4 59196421 59202837 AACTTTACTACTGCTGAGGG 57 59196380 59196399 AGTAAACTCTAGCACGTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045262.1 ENSRNOG00000059536 ENSRNOT00000086768 1 1 1 80 20 39771902 39778793 CTCTACATTCTCTGAGAATGACTG 59 39771845 39771865 TATGTTCAAGGAAGGACTGTG 58 Novel Rattus norvegicus 81 AABR07045313.1 ENSRNOG00000052239 ENSRNOT00000080484 1 1 1 95 20 42398709 42398727 CTTCTGGAGATTGCCACAC 59 42399935 42399953 ATGTGAATGGAGTTCGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 2 2 2 80 4 68424644 68424665 GAGATTAAAGAACTCCACAGCA 59 68424703 68425216 TTCATTCATGTCAATCCACAGG 59 Novel Rattus norvegicus 81 AABR07073453.1 ENSRNOG00000051701 ENSRNOT00000079538 1 1 1 98 8 119372025 119376810 CTCAGACAGGACCGAAGAG 59 119376872 119376890 AGAATGCTGTGACCCTCTG 59 Novel Rattus norvegicus 81 AC241722.1 ENSRNOG00000053975 ENSRNOT00000085523 3 1 1 100 Y 1949498 1949516 ATTTCTTGGCAGCATTGTG 57 2027160 2027179 CGGTATTCTCCAGCAATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043844.1 ENSRNOG00000059155 ENSRNOT00000082617 1 1 1 85 19 43534888 43534906 CTGGAGTCTGAGGACTCAG 59 43534955 43536179 ATCCTACTGGAACACTGGC 59 Novel Rattus norvegicus 81 AABR07043928.1 ENSRNOG00000053616 ENSRNOT00000086963 3 1 1 93 19 48222129 48222150 GCACTAATGTCCATTAATCAGG 57 48220961 48222076 GAAGGGCTCAACAAATTGTG 58 Novel Rattus norvegicus 81 AABR07009357.2 ENSRNOG00000060543 ENSRNOT00000086398 2 1 1 81 2 94302507 94303487 GTTAACTTGTCAGTCCTAGGGA 59 94303529 94303547 GATATTCCCGCTTCCTGGT 59 Novel Rattus norvegicus 81 AABR07007078.2 ENSRNOG00000061164 ENSRNOT00000078143 3 1 1 80 1 279710210 279713217 TTCCTAATGAGAATCCGTGC 58 279710149 279710169 ATCTTCCTGTCTTCACTTCCT 59 Novel Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 1 1 1 60 2 126934610 126934628 GGAGTCCTTCCAGACAGTG 59 126933556 126934586 TCTACTGCTCACTCCTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010160.2 ENSRNOG00000058063 ENSRNOT00000088347 1 1 1 80 2 127352904 127354852 AATATGCTGCCAGCAACTG 59 127352842 127352861 TGTATCACCTAGGGTCCTCC 60 Novel Rattus norvegicus 81 AABR07010502.1 ENSRNOG00000051733 ENSRNOT00000084083 1 1 1 62 2 137473722 137473744 CCAACCAACCTCATGTATTACTC 59 137472768 137472791 GAGGATGTCACTCCTAAATATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 3 1 1 68 2 139942376 139945246 CACAGACATGACCAGGAGG 60 139945276 139945296 ATATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010585.1 ENSRNOG00000059063 ENSRNOT00000084748 3 1 1 123 2 141576462 141576481 TGACATACATCCAGCCAGTG 60 141577881 141577899 CTGGAGAGCTGAAGGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010710.1 ENSRNOG00000060053 ENSRNOT00000084544 3 1 1 60 2 148568154 148568855 TTACTGCCTCAAATGATGCA 58 148568113 148568134 TAACTCTTGTCATGAAACTCCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07010868.1 ENSRNOG00000052016 ENSRNOT00000078455 3 1 1 81 2 154030672 154033219 GAAAGAATGGCTGAGAAAGAGTC 60 154030613 154030631 TGCAGCCTACAATCCATCC 60 Novel Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 3 1 1 64 2 155301995 155303700 GTTGTAGCTTCAGTCTTAAAGGAC 60 155303723 155303741 AAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011084.1 ENSRNOG00000057289 ENSRNOT00000086020 3 1 1 80 2 157359158 157359181 CTTTGAATGTGTCTCTATGGTCTG 60 157359217 157360149 AATAAACCTCTTCCACACTTGG 59 Novel Rattus norvegicus 81 AABR07011127.1 ENSRNOG00000053128 ENSRNOT00000077124 1 1 1 60 2 158795225 158795246 CTCCTCAGAGAAACAAGAAACC 59 158791519 158791539 GTCAGGAAGAATTTCTGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011888.1 ENSRNOG00000053028 ENSRNOT00000085019 2 1 1 80 2 174306753 174306772 TCTAGGACAGATTCGACTCC 58 174254896 174306710 GTTCCACTGAAATGTCCGT 58 Novel Rattus norvegicus 81 AABR07012065.1 ENSRNOG00000056112 ENSRNOT00000086755 3 1 1 117 2 184693458 184693476 CTTATCGGCATCATCACCC 58 184693058 184693377 ATGCAAGGACCTGGTAGAG 59 Novel Rattus norvegicus 81 AABR07014118.1 ENSRNOG00000058018 ENSRNOT00000090252 3 1 1 88 14 1439968 1439988 CCTAGAAGCTTCACAAGTTGG 59 1438918 1439918 AGAGGATGGCATCTGACTG 59 Novel Rattus norvegicus 81 AABR07014161.1 ENSRNOG00000052143 ENSRNOT00000091056 2 1 1 80 14 4064527 4064545 CCTCCATAGATCATGCCCT 58 4064587 4064747 CTCTTGTCTTTGGATCCTGAG 58 Novel Rattus norvegicus 81 AC129695.1 ENSRNOG00000053644 ENSRNOT00000083507 3 1 1 141 14 6875512 6877508 TATATGCCAGACTGCTGCC 60 6875389 6875408 GACAGAGATGCACTACATGC 59 Novel Rattus norvegicus 81 AC136013.4 ENSRNOG00000061793 ENSRNOT00000091589 2 1 1 80 14 17659901 17659919 TAGAGAAGGGCCACAATCC 59 17661229 17661247 TTTAGTGGACCCAGATCGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 2 1 1 60 2 206162762 206162780 TGCACCAAGAAGGATTTCC 58 206157124 206162741 GGGCAAATACAAATTTCCTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072775.1 ENSRNOG00000052798 ENSRNOT00000082525 1 1 1 80 2 209358491 209358509 CTTTCAGCCCTAGAGCTGG 60 209319616 209358449 ATGTTTGCTTCAAAGAGCTGG 60 Novel Rattus norvegicus 81 AABR07072775.1 ENSRNOG00000052798 ENSRNOT00000082525 2 1 1 80 2 209358492 209358510 CCTTTCAGCCCTAGAGCTG 60 209319617 209358449 TGTTTGCTTCAAAGAGCTGG 59 Novel Rattus norvegicus 81 AABR07013250.1 ENSRNOG00000053168 ENSRNOT00000088970 1 1 1 80 2 230477283 230477301 TGACACCATGGATGAGCTG 60 230477339 230478422 GCCATATGTTCATAGGATTTCTGAG 60 Novel Rattus norvegicus 81 AABR07013314.1 ENSRNOG00000060298 ENSRNOT00000091790 1 1 1 82 2 232988643 232988661 ACTTTGAACTAGCAAGGCA 57 232988706 232993623 TTCCAGCAAATCTTTCTCCA 58 Novel Rattus norvegicus 81 AABR07013323.1 ENSRNOG00000054971 ENSRNOT00000081788 2 1 1 80 2 233444065 233448958 CACGTTCCTGAGGTTACAC 58 233444003 233444024 ACTCTCCTTACCTCCTTTAGTC 59 Novel Rattus norvegicus 81 AABR07013365.1 ENSRNOG00000058246 ENSRNOT00000085046 3 1 1 133 2 234491504 234493137 TATGACTGCAGGTTTGACG 58 234491389 234491409 CAAGTTTGTCAAGAACAGGAC 58 Novel Rattus norvegicus 81 AABR07013676.2 ENSRNOG00000057293 ENSRNOT00000087350 3 1 1 98 2 249528201 249529899 GAGTAATACTAACTACTGATGGCG 59 249528126 249528144 CAAACTGCTCCAACTTGGG 59 Novel Rattus norvegicus 81 AABR07013724.1 ENSRNOG00000057103 ENSRNOT00000080920 3 1 1 80 2 253691753 253691772 GATGATGACTCAGCATGGTG 59 253691814 253698807 GTAGGTGTCTTGACATGCTG 59 Novel Rattus norvegicus 81 AABR07013762.1 ENSRNOG00000057395 ENSRNOT00000082852 3 1 1 81 2 255038547 255038567 GCAACACAGTTCCATTATCCA 59 255038606 255076491 GTGTTCAGTTTCTGGTCTATCAG 59 Novel Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 1 1 1 60 2 115231956 115231974 CCCTCTTCCTTCTGTTCCT 58 115231911 115231929 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786 1 1 2 80 X 22399655 22399673 GAGGATCCTTTGCGTAGCA 60 22369771 22399614 AATAATGGTGGATGTTCTGGGT 60 Novel Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 2 1 1 195 12 50212240 50212258 AAAGGAGAAGCTGGAATGG 57 50212027 50212045 CTTAGGATTGGCTTTCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767 3 1 2 104 7 115830351 115830370 CACTACGGACTCTCCTTCAG 59 115829168 115829948 CCTTCAGACCACTGTCCTC 59 Novel Rattus norvegicus 81 AABR07061577.1 ENSRNOG00000061726 ENSRNOT00000077970 3 1 1 80 4 134398446 134398767 GAAGGAAGAAATGAGCAGAGG 59 134398807 134398827 GTACAAATCAGCGTGTAACCA 59 Novel Rattus norvegicus 81 AABR07012475.1 ENSRNOG00000051678 ENSRNOT00000081672 2 1 1 63 2 196582948 196582966 AAGAGGAGGAAGAGGAGGA 59 196582590 196582608 TCTTCCTCCTCTTCCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_5_0825.2 ENSRNOG00000051299 ENSRNOT00000076838 1 1 1 60 5 78365927 78365946 GGAGAAACTCATTCTTCCCA 57 78365886 78365904 CCATGCAGAACAATCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053399 ENSRNOT00000087208 3 1 1 60 1 271059377 271059399 GATACAGAGAAGATTAGCATGGC 59 271059339 271059358 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd1 ENSRNOG00000051244 ENSRNOT00000076975,ENSRNOT00000080556 1 2 2 80 13 49005515 49006088 CCCAATACTACCTTCCACCA 59 49006129 49006149 ATGACAGATTCACAGGGAGAC 60 Novel Rattus norvegicus 81 AABR07053741.1 ENSRNOG00000053270 ENSRNOT00000085922 3 1 1 85 3 123157002 123157024 CACCATATAACAAGAACGTGTG 58 123156938 123156956 AATAGCTTGAGAGTGGCTG 57 Novel Rattus norvegicus 81 AABR07030543.1 ENSRNOG00000051634 ENSRNOT00000090759 2 1 1 61 10 92771475 92771493 GACCGAAAGTGAACGTCTC 59 92771515 92771536 CCTCATTTGATTTCTGAAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005040.1 ENSRNOG00000054914 ENSRNOT00000078844 3 1 1 60 1 177529416 177529435 TCAAAGATCAAGGTGTTGGC 59 177529458 177529476 CTGCAAGCCAAAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000076044 1 1 4 87 5 171667068 171668411 AAGAACCAGAGCTCACTGG 59 171666999 171667017 CTCAGAGGTGGTTGATGGG 60 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 2 2 4 87 5 171667126 171668412 TAAGAACCAGGCATACGCA 59 171667057 171667075 CAACCAAGCATCCAGTGAG 59 Novel Rattus norvegicus 81 AABR07024498.1 ENSRNOG00000052713 ENSRNOT00000077284 3 1 1 81 16 1953221 1953240 TTTCCACAGCTTTCCAAAGC 60 1953283 1953304 AATCAGCCTCAGGTGTACTG 60 Novel Rattus norvegicus 81 AABR07022134.1 ENSRNOG00000053694 ENSRNOT00000085932 1 1 1 118 13 109490651 109490669 GAGTGAAGAAGCCCTACCG 60 109490464 109490569 CACTCGCTTCTGAAACAGC 60 Novel Rattus norvegicus 81 AC119462.1 ENSRNOG00000058599 ENSRNOT00000081209 2 1 1 60 10 86579933 86579952 ACATTCATACACTCTCACGC 58 86579972 86579993 GAGTATGTGAGTGTATGTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029866.1 ENSRNOG00000054223 ENSRNOT00000086471 2 1 1 60 10 56685033 56685051 GGTAATGCAGTTGGTCGAG 59 56684991 56685011 TTTAACCTGCCAAATCGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004765.1 ENSRNOG00000056160 ENSRNOT00000088468 2 1 1 61 1 155281292 155281312 AGATCAAGTGTAGAAAGCGTG 59 155281335 155281353 GGAAAGCATGGAGTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061462 ENSRNOT00000079397 1 1 1 60 2 169730528 169730550 GGAACGATACAGAGAAGATTAGC 59 169730570 169730588 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0829.1 ENSRNOG00000051025 ENSRNOT00000075859 3 1 1 85 13 77892349 77892367 CGAGAAACACTTTGCTCGG 60 77892413 77903732 ACAGCTGAACCTCAGTATACAG 60 Novel Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847 2 1 2 80 16 31274706 31274726 TACATTTCATAGAGAAGGCCC 57 31273648 31274406 GTATGGTCTGGGTGATGAG 57 Novel Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 1 1 1 60 20 33520835 33520853 TCTCAGATCAACCACAAGC 58 33493057 33493075 TCTCAGTCAGTTCAGACCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 3 1 2 80 4 113982398 113983038 TCATCAACAAGGAGACTAGGG 59 113983080 113983098 GGTTGCTGATACTGAGGGT 59 Novel Rattus norvegicus 81 Rn60_X_0746.4 ENSRNOG00000051339 ENSRNOT00000076603 1 1 1 60 X 73774894 73774912 GTATAGCCCAGACCATCCT 58 73774852 73774870 TTCTAGCAGTTGGAAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057108 ENSRNOT00000081930 3 1 1 61 9 2678510 2678528 AGAGACTTTGACAGCCCAG 59 2678551 2678571 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.1 ENSRNOG00000052845 ENSRNOT00000084538 2 1 1 170 17 44528336 44528354 CGAGGGACAACAAGAAGAC 58 44528488 44528506 TAACCTTGTGGTGGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.2 ENSRNOG00000060938 ENSRNOT00000079073 1 1 1 61 7 143212729 143212747 TGATGCTGTCCAGATCCAG 59 143212772 143212790 CTCTGAGACCTCTGTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.1 ENSRNOG00000053103 ENSRNOT00000086098 1 1 1 101 6 139660634 139660652 CAGCTTGGGTTTCCTTGTC 59 139660441 139660459 AGTTTCAGGGACCTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065656.4 ENSRNOG00000053312 ENSRNOT00000087351 3 1 2 82 6 139004725 139004746 CTATACCTGCAAATGAACAGTC 57 139004621 139004684 TGCTGGTCTATAATACCTGTG 57 Novel Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 1 2 2 60 6 143194593 143194611 GCTCACAATCTCCAAGGAC 58 143194551 143194571 GTCCACATTGGTGATCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029417.1 ENSRNOG00000053479 ENSRNOT00000081888 2 1 1 60 10 28192520 28192540 TCAAGTCAGCATTTCCATCAG 59 28192565 28192584 GTGTGGACTCGTAATCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000081697 2 1 2 80 8 64852335 64855080 GGATGTCTATATGATACACCAGC 58 64852277 64852296 GGACTGATGGCATTATTCCC 59 Novel Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 3 1 1 79 1 234836370 234836390 ATCCCTGAAAGAATTCCAGGA 59 234836239 234836260 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071701.1 ENSRNOG00000057397 ENSRNOT00000088348 1 1 1 67 8 126975980 126975998 GTAAGTTCAGCTCGCAGAG 58 126976819 126976837 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341 1 1 4 120 20 4428452 4428470 ATCAGTCAGCCTCTGTAGG 58 4427878 4428368 TAAGTAGCAGAACTGGGCT 58 Novel Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 1 1 1 72 20 896889 896909 CTCTGCTATACCACTTCTACC 57 896946 896965 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 1 1 1 79 18 7118599 7118617 GAAGACAACACTGGGTCAG 58 7118826 7118844 TCTCCTGATCGCGAATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 3 1 1 82 18 7118596 7118614 TTCGAAGACAACACTGGGT 59 7118826 7118844 TCTCCTGATCGCGAATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 2 2 2 80 1 1441915 1441935 CAATCTTTCTCTGAGTCTGGG 58 1440628 1441878 CTAAAGGAGTGTACATCTTCTAGC 59 Novel Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 3 1 1 60 5 7577076 7577097 CAATGATCTCATCTTGGAAAGC 58 7577471 7577489 TTCCTCAGAACATTGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 2 1 1 72 10 66654458 66654476 GAGTTGAGTCTAGCAGCCT 59 66652844 66652862 TCTCTTCGGTCTCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 3 2 2 81 10 67111281 67127724 CTCTGGAACTTACAGAATGGA 57 67111220 67111238 GAGAAGAGCTGGTCTTCTG 57 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 3 1 1 88 5 38572312 38572333 ACTTACACAGTGAACTACTGGA 59 38567803 38567821 CCATTGTTCCATCCCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161 3 1 2 83 10 88568241 88577769 CTGTTCAGAATCATCGAAGCC 60 88568178 88568196 GAGTTCAGCTGGATGTTGC 59 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 3 3 3 82 20 56198702 56199212 TGGTTATGCAAATCAGAACCTG 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 1 1 1 64 5 132777766 132777785 ACATCAAGCTCATGTCACTG 58 132791301 132791319 ACATGCTTCACCTCTAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 1 1 1 69 1 45409547 45409565 TATTTCAGTCTTCGTCGGG 57 45409398 45409416 ATCTCAGCACATAAACCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 3 1 1 64 6 32307983 32308007 CTCCTGGAAGTGAATTCTATTTACG 60 32307329 32307348 CAAACAGCAGTGTAAGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 1 2 2 80 15 46495173 46495191 ATCTTGGGAAAGGCAACGA 60 46495231 46502322 GTCATCTTCTTTGAATCTCCTGG 59 Novel Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 1 1 1 60 18 71990598 71990616 TTGGACAAGTCACTGACCT 59 72001708 72001726 TCCACTCTACAATGCTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 1 1 1 73 18 80294332 80294350 ACTCTGGACTTCTACCCTC 57 80300885 80300903 GTGAGTGACTTCTTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 2 1 1 71 15 105845853 105845877 GAATAGGGCTTACATAGACATAGAC 59 105849425 105849443 TCATGGACGTTTGGTTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 1 1 1 61 3 30111753 30111771 TGTGAATCCTGCTCTCAGC 60 30111920 30111938 GTTTCTGAAGCCAGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 3 1 1 60 1 108840493 108840512 CTGGCTACTGTCAAGTAACC 58 108840348 108840368 TTCTTTACAGACTGACTGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 1 1 1 60 13 65747802 65747824 CAATCCTGACTTCATGTTCAGAG 60 65750231 65750250 AGGTAGCTCTATGAGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 2 3 3 80 6 125287309 125289661 ATATGACCGCCACAATTGC 59 125287247 125287266 CTGTCATCAATCCACTTCGT 58 Novel Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 1 1 1 60 13 95702818 95702836 GGCTGTTAAAGGTCTCCGT 60 95698434 95698452 GAGACCGCCATTTGAAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 3 1 1 84 13 105919492 105919510 CAGACCCTATGCAGAAAGC 58 105918507 105918525 CTATGGTAGCAGCATCGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 1 1 1 60 13 107491188 107491206 GAGATGAACGTACGGACAC 58 107501005 107501023 CAGTCCTTTGTGCAGACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 1 1 1 69 1 141675224 141675242 AAGAAAGAAGAAAGGCGGA 57 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 1 1 1 67 3 109814065 109814083 GTCCTGCTGGGATTAGTGG 60 109811959 109811977 AAGCAGAGACAAAGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC141028.2 ENSRNOG00000052813 ENSRNOT00000091502 2 1 1 73 X 5824567 5824585 GAAACATGCCTGCCTTTCC 60 5789722 5789741 ATTTGCTCCATTTGCTTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 3 1 1 63 X 28942389 28942413 CCATTAGGTCTTTACTAATAGCCTG 59 28943223 28943242 GTAGCCTTCTCTGAAATGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000087267 1 1 2 88 X 35972463 35972481 GGAAATGGACAGTATCGGG 58 35971858 35972411 CAAATGACACCTGGTCCTG 59 Novel Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 3 1 1 72 7 36160483 36160501 CATTCCAGAAACTGCTCCC 59 36164774 36164792 ATATGGTCATGTGGATCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545 1 1 2 80 17 19056999 19057694 CAAACTCAGAGTTCCGATGG 59 19057737 19057755 GATGACAGGCAAGACATGG 59 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 3 1 1 69 17 20636849 20636867 ATTAGAGGAGTTCAGCGGC 60 20668851 20668869 CTGAGAGTTCTGGGTTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.3 ENSRNOG00000057364 ENSRNOT00000077658 2 1 1 64 17 28002999 28003017 GAACTTCCAAGGCCAACTC 59 28000104 28000127 GGCAGCATTTCTTAGTATACAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 1 1 1 60 17 37332684 37332702 CTGCAGAAGTTGGACTCAG 58 37337150 37337168 TCAGTGGAAGACTTGGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 1 1 1 60 10 15170420 15170439 CCCTACTGACCTACGATTGG 59 15175417 15175436 TTGAGAAGCAGGGTCTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 2 1 1 60 10 16236007 16236028 CTTGGAAGAAAGATACGTTGGG 59 16236407 16236430 GTCTTCTTTCTATCTTGTGGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057 2 1 2 80 17 62673843 62673861 TGTTTAGCTCCCAGTCACG 60 62673390 62673799 AGTCACGTTTCGAGCTCTC 60 Novel Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 3 1 1 76 8 84681119 84681137 GAAGAAGTGGACCATCAGC 58 84671526 84671544 CTTCGAAGTTGGGTCAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 3 1 1 63 2 44647332 44647350 GGTGTACACGTCATCTGAC 58 44645819 44645837 CTTCCGATTAGCATTGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 3 1 1 60 17 86214920 86214939 CAATGTGAGGCACATCTGTG 60 86214789 86214808 CTTTCAGTTTCTGGAGACCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 2 2 2 84 20 41022102 41023152 TGTTGACTGGTAGATCCCAG 59 41022037 41022055 TCATCTTCTCCTAGCGCTG 59 Novel Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 3 1 1 73 7 138150646 138150664 CAACTCTCCATACACTGCA 57 138150088 138150108 TGAAGGTGTAACTTGTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 1 1 1 72 2 173565611 173565629 TACCAAACTGCTACAGCAC 58 173568550 173568569 AAGTGTACAAGGTTACAGGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 3 1 1 70 2 177343674 177343692 TTCTGCCTTGGGATTCCTG 60 177343189 177343207 TCAAGGTTCCTTCTTCGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014158.1 ENSRNOG00000059950 ENSRNOT00000081969 2 1 1 64 14 3792321 3792340 CATTAACACTTGAGCAACGG 58 3792967 3792985 CTCCGCAACATATAAGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 Prkaa1 ENSRNOG00000012799 ENSRNOT00000017626 1 1 1 80 2 54884826 54888153 AGATATCAGGGAACATGAATGG 58 54888192 54888212 ATGGTTGAACTATAAGACGGG 58 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152,ENSRNOT00000038543 1 2 2 80 2 178277413 178277433 GAAATGATGTTCGGCTCTGTC 60 178277256 178277371 CAGTTGTGGAGGAGATCGT 59 NA Rattus norvegicus 81 Frmpd4 ENSRNOG00000004118 ENSRNOT00000039796 3 1 1 80 X 28201249 28202949 GAAACCACAGCTTTAACAGAG 58 28202991 28203009 ATCAGCTTCAGGATGTGGA 58 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375,ENSRNOT00000031743 2 2 2 80 2 186430873 186431092 TAGTGAACGTTCACTTTGCC 59 186430812 186430830 TGAGGGTCACATCAGATCC 59 NA Rattus norvegicus 81 Gpr150 ENSRNOG00000026944 ENSRNOT00000029265 3 1 1 60 2 2814450 2814468 CGGTGTCTAACCTATCCCT 58 2814408 2814427 TGCTTAGAAGTGAGGTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnlz ENSRNOG00000018791 ENSRNOT00000076487 1 1 1 80 3 3797926 3797944 TACCAGCTCGTCTACACCT 60 3797679 3797882 GAGTCCCACAGACCTTCAG 59 NA InUTR Rattus norvegicus 81 Dnlz ENSRNOG00000018791 ENSRNOT00000076487 2 1 1 81 3 3797927 3797945 CTACCAGCTCGTCTACACC 59 3797679 3797882 GAGTCCCACAGACCTTCAG 59 NA InUTR Rattus norvegicus 81 LOC365839 ENSRNOG00000016146 ENSRNOT00000021604 3 1 1 81 2 186631005 186631025 TAGGAATTCAGAACCTTGGCT 59 186631063 186631204 GTAAGCCTATGATAGTTGTCACTG 59 NA Rattus norvegicus 81 Prmt6 ENSRNOG00000017187 ENSRNOT00000023079 3 1 1 218 2 213177266 213177284 TTTGCCATGGAGGACTGAG 60 213175148 213175167 CTTCATGTATAGCCAAGGCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100359563 ENSRNOG00000029843 ENSRNOT00000043008 2 1 1 60 8 93439880 93439900 ATCGTTTCCAGATGAGAATCC 58 93439921 93439940 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srsf11 ENSRNOG00000029592 ENSRNOT00000044236 1 1 1 80 2 264845314 264845336 GAAATAGAGGAAGCCATGAAGAG 59 264843828 264845275 TTCTTCCTTCTTGTCTGGCT 59 NA Rattus norvegicus 81 LOC100909993 ENSRNOG00000045993 ENSRNOT00000075059 1 1 1 60 2 115272512 115272531 CTATGATCGCTATGTTGCCA 58 115272551 115272572 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909993 ENSRNOG00000045993 ENSRNOT00000075059 3 1 1 60 2 115272326 115272346 ACCCATGTACTTCTTCCTCAG 59 115272366 115272386 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847,ENSRNOT00000080677 1 2 2 80 2 56112345 56112366 GCAGATCATATTACCCATGACC 59 56112051 56112304 TTCTCCTTCACCCACTGAC 59 NA Rattus norvegicus 81 Olr1125 ENSRNOG00000026489 ENSRNOT00000039181 2 1 1 60 8 18846348 18846368 GTGTTTATCTGAGTTCTGCTG 57 18846390 18846408 ATCACAGAGGCTATTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppcs ENSRNOG00000008572 ENSRNOT00000011392 3 1 1 80 5 138469276 138469296 GTAGAGTTTACCACTTTGGCG 59 138469054 138469234 CGCAGAAGAGCCTAATGGA 60 NA Rattus norvegicus 81 LOC102550734 ENSRNOG00000030296 ENSRNOT00000042885 1 1 1 60 8 104155529 104155548 AAGGAATGTTCCATACCGCA 60 104155488 104155507 ATCCTCATCCTCATTACGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc33 ENSRNOG00000013217 ENSRNOT00000017665 2 1 1 80 2 54921921 54921939 GAAGTGGGATGAAGCACTC 58 54921982 54926871 TGAAGAGACATCAGGACCTG 59 NA Rattus norvegicus 81 RGD1562683 ENSRNOG00000042967 ENSRNOT00000065810 1 1 1 81 11 33757997 33758015 AAAGCAGCTACTCTGAGCA 59 33748099 33757952 CTGAAAGTACGCAGTCAGC 59 NA Rattus norvegicus 81 Bak1 ENSRNOG00000000485 ENSRNOT00000000576 3 1 1 80 20 5612309 5612330 GAATTTACTGGAACAGCTTCAG 58 5611066 5612269 CTCTTAAATAGGCTGGAGGC 58 NA Rattus norvegicus 81 Slc26a8 ENSRNOG00000000512 ENSRNOT00000059264 2 1 1 80 20 5887943 5887961 CCTCAGACTTAAGCGTGGA 59 5882324 5887902 TGCTCAGATTGTCATTCTTGTC 59 NA Rattus norvegicus 81 Med8 ENSRNOG00000028477 ENSRNOT00000067237 3 1 1 62 5 137243340 137243598 TTCTAGAAGTCCATTCTAGGGA 58 137243620 137243639 TGAAGCTGACTTGATGTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000086854 2 1 2 91 15 38096051 38096069 AATACGTACCTCTCGCAGG 59 38096507 38096525 CTCTCACTCTAACGGGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 3 2 2 104 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549974 34549992 CACATGGAATCGGAAGCTG 59 NA Rattus norvegicus 81 AABR07047219.1 ENSRNOG00000048760 ENSRNOT00000075052 3 1 1 80 5 24694096 24694115 CAAAGAAGACAGCAATGGCT 59 24694159 24694177 AGACCTTGACAGGCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1565653 ENSRNOG00000007803 ENSRNOT00000010249 2 1 1 60 8 119285695 119285716 CACAAGACCACTATCTTTACGG 59 119285737 119285755 TGTGCTTCAGTTCGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr453 ENSRNOG00000055374 ENSRNOT00000084321 2 1 1 60 3 73089884 73089905 GTATTAGTTGTCAGTAGCACCA 58 73089926 73089944 GGATAGCGATGAGGATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd20 ENSRNOG00000000517 ENSRNOT00000000624 3 1 1 80 20 6211568 6214493 CCAGGAATGAAGACTTTGCAC 60 6214533 6214553 CAGGAAGTGGCATTATGTGAG 59 NA Rattus norvegicus 81 LOC100365336 ENSRNOG00000003783 ENSRNOT00000005021 1 1 1 60 X 53629378 53629398 AATCAAGAGGAAGTAGCCCTG 60 53629420 53629438 ACTTCTGTGACTGACGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igsf1 ENSRNOG00000007600 ENSRNOT00000010325 1 1 1 80 X 136800765 136801296 GATTGTTGTAGCTTGGCCC 59 136800703 136800723 AGAACTGGATGAGATACTCGG 59 NA Rattus norvegicus 81 Mcpt1l4 ENSRNOG00000031304 ENSRNOT00000045948 3 1 1 80 15 34928498 34928919 GAAGGATGAGATCAGGAGACTC 60 34928956 34928978 CTCGTCCATGAGATACAATACCA 60 NA Rattus norvegicus 81 AC118954.1 ENSRNOG00000058912 ENSRNOT00000090993 1 1 1 80 20 7333892 7333910 GCTGACACCCGTTTAAGAC 59 7333950 7335367 GTAGCCACATAATTTGTCCTCAC 60 NA Rattus norvegicus 81 AABR07006258.1 ENSRNOG00000028444 ENSRNOT00000039369 3 1 1 60 1 226252516 226252534 CAACTCTTCTTCGTTTGGC 57 226252558 226252576 GGAAGTACTGGACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561590 ENSRNOG00000010732 ENSRNOT00000014397 2 1 1 81 15 38069676 38072777 CAGATCTACACCTGGATGGA 58 38072821 38072839 CCTTCTTTCTGGCTTCTGG 58 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000015502 ENSRNOT00000020907 1 1 1 80 2 219664444 219664463 GTCTAGCATCACCTTTCCAG 58 219663612 219664401 ATTCCCTGAACAACACCCT 59 NA Rattus norvegicus 81 Zscan2 ENSRNOG00000022164 ENSRNOT00000034267 2 1 1 125 1 142679826 142679844 AGCTGAGGTGAATCCAGAG 59 142679933 142682109 CAAGAAACACTGCCTCTCC 59 NA InUTR Rattus norvegicus 81 Olr105 ENSRNOG00000015885 ENSRNOT00000021264 2 1 1 60 1 168600221 168600241 GCTCAATCCAATCGTCTACAG 59 168600181 168600200 CATCTTTAGAATGCGAACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 1 3 3 146 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 AABR07041987.1 ENSRNOG00000049579 ENSRNOT00000071783 1 1 1 226 X 144999344 144999362 AATCGTGTGGAAACAACCG 59 144999713 144999735 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Sowahd ENSRNOG00000049392 ENSRNOT00000075314 2 1 1 60 X 123663245 123663264 ATATGGTCATCAAGGTGCTG 58 123663286 123663305 TTGTAATCTCGACGTGAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpox ENSRNOG00000001654 ENSRNOT00000002257 3 1 1 80 11 44041761 44041780 AAGTTTGGCCTCTTTACTCC 58 44041081 44041719 CATATACTCCCACCTTGCTG 58 NA Rattus norvegicus 81 Cyp8b1 ENSRNOG00000019481 ENSRNOT00000026355 2 1 1 60 8 130549082 130549101 AAGTCAGGCAAGAAGATCCA 59 130549041 130549059 GACATATGGAGACACCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000071353 1 1 2 80 2 45801863 45801881 CTCTGGGAAGACCAGTCTG 59 45801924 45858991 ATATTGTCAGCTCCTGTGGT 59 NA Rattus norvegicus 81 Inpp5f ENSRNOG00000020388 ENSRNOT00000027630 3 1 1 80 1 200088108 200088128 TTGTGTAGATGACATTCACCC 58 200088170 200088799 TTATACCGCATTCCTGCTC 57 NA Rattus norvegicus 81 Hrc ENSRNOG00000020719 ENSRNOT00000028116 3 1 1 82 1 101327375 101327396 CGATGTAGTGAATGTGAAAGCT 59 101327439 101327654 CAGAATTGGCAGTGCTGAC 60 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 1 3 3 80 2 184901907 184903595 ACATACAGGACTCTGCTGG 59 184903639 184903657 CAGAAAGCCAAGAGAAGCC 59 NA Rattus norvegicus 81 Gemin8 ENSRNOG00000029038 ENSRNOT00000048155 2 1 1 65 X 29825388 29825407 TAGATCCGTTGTTACCCACC 59 29817393 29825360 AAGTCCAAGTGGGAACTCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Sass6 ENSRNOG00000046153 ENSRNOT00000020757 1 1 1 80 1 69829399 69830788 CCTGAATGTGGTTGATAGTAGAC 59 69829341 69829359 TTCTGGAATGTGAACGCAG 59 NA Rattus norvegicus 81 Sass6 ENSRNOG00000046153 ENSRNOT00000020757 2 1 1 81 1 69823396 69825006 GCTGACAAGGAGAATGGTG 59 69823333 69823351 GTCCACGTAAAGGAATGCT 58 NA Rattus norvegicus 81 Nr0b1 ENSRNOG00000003765 ENSRNOT00000005023 2 1 1 84 X 54735556 54737923 TTTAACCCAGACCTGCCTG 60 54737971 54737989 TGTGCTCAGTGAGGATCTG 59 NA Rattus norvegicus 81 Kcnk7 ENSRNOG00000020784 ENSRNOT00000028197 2 1 1 86 1 221059904 221059922 CTAGGAGACTTGCTGCCTG 60 221059970 221060229 GAGCAAGTAACCAAGAAGTGC 60 NA Rattus norvegicus 81 Irx2 ENSRNOG00000012742 ENSRNOT00000017019 2 1 1 80 1 33273685 33273703 CTTCCAGAAGCAAGGAGGA 59 33273341 33273642 GTAGACTGATCCCTTCGTCC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567,ENSRNOT00000087709 3 3 3 80 15 43021136 43022132 GGAGCGAAGGAAGTACCAG 60 43022175 43022194 TTCTGGATTACCTCACGCTC 60 NA Rattus norvegicus 81 Tmem219 ENSRNOG00000020000 ENSRNOT00000027094 1 1 1 91 1 198333168 198333186 CTTCGGAGGTGATCCAGAC 60 198328877 198333119 CCTCTTCTGGTATGTCTTTAAATCC 59 NA Rattus norvegicus 81 Hars ENSRNOG00000028105 ENSRNOT00000039291 2 1 1 80 18 29615053 29615163 TGGCATTGATGACAAGATCTC 59 29614993 29615011 ACTGCCTCATAGATGACCC 59 NA Rattus norvegicus 81 LOC100912580 ENSRNOG00000049807 ENSRNOT00000074733 2 1 1 60 3 158936802 158936822 CTGAATTCTCACCTTCACACC 59 158936762 158936786 GGTCTACAAAGGACAAGTTAAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 3 2 2 80 1 176929807 176929826 CCAGCAATCAAGAGTTTGAG 57 176929866 176930210 GTCGGATTGTGATCTTATTGTC 57 NA Rattus norvegicus 81 Irf2bp1 ENSRNOG00000014252 ENSRNOT00000019075 2 1 1 60 1 79912686 79912704 TGGCTATGAGTTTGAGCTG 58 79912728 79912746 GTACACATTGCCAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt10c ENSRNOG00000039567 ENSRNOT00000002198 2 1 1 84 11 47047377 47049851 GCGCTTTAAAGTGGTTCCT 59 47049899 47049917 ATGGCACCAGATATCTGGC 60 NA InUTR Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728,ENSRNOT00000090097 3 2 2 80 13 26801747 26801932 TCATAAAGCAGGCACAGGA 59 26801685 26801707 CAAACTTTCCTGACTTAGAGGTG 59 NA Rattus norvegicus 81 Rab43 ENSRNOG00000037768 ENSRNOT00000013299 3 1 1 106 4 119697270 119697288 GACATCAGCAAGAGGAGCA 60 119695469 119697201 TCTGACTTGTTCCCGATCAG 60 NA Rattus norvegicus 81 Vsig10l ENSRNOG00000023411 ENSRNOT00000039446 2 1 1 84 1 98461416 98461434 ACCTCAGTGGAAACCTCAC 59 98459890 98461368 GGCTGATGACTTGTTGAGC 59 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 2 2 2 78 1 222244594 222245105 AAAGAGCTACACCCTGACC 59 222244534 222244552 CTCGATACGCCTCACTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Cadps ENSRNOG00000008570 ENSRNOT00000012153 3 1 1 80 15 15654590 15654610 GAGTTTGGAAAGCACTTAGAG 57 15654652 15658480 AATCCTGGTTCTCTTGACG 57 NA Rattus norvegicus 81 Csprs ENSRNOG00000017256 ENSRNOT00000023184 2 1 1 60 9 92565697 92565715 AGCTAAGTGTGGGAGAAGG 59 92565735 92565757 AGGTAAGTATTCAGAGCCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.8 ENSRNOG00000051097 ENSRNOT00000076662 2 1 1 60 X 58595183 58595202 GCATCCCTACTGATGTTCCT 59 58595142 58595160 GCAAAGCCTTCCTCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000056515 1 1 2 80 1 99132995 99133019 GTTCTTACAAGGATGTACAGTTCTC 60 99131577 99132962 CAGACTGAGGAATCTTTGTAAACC 60 NA Rattus norvegicus 81 Zbtb22 ENSRNOG00000000476 ENSRNOT00000000558 3 1 1 60 20 5477245 5477264 CGTGAATATGCATCTCAACC 57 5477204 5477224 CTTGAACTTCTTGTTGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559,ENSRNOT00000022980 1 3 3 80 17 10610971 10610990 CACCTACAGCAATCCATTGC 60 10609362 10610931 CAGCCACTTGATAACATCTCTG 59 NA Rattus norvegicus 81 Pdzd8 ENSRNOG00000009460 ENSRNOT00000068082 1 1 1 80 1 280485670 280496133 GCTAGAATGTAGCAGGTTACTC 59 280485611 280485629 CCACTGCTTAGCTCAAGTG 59 NA Rattus norvegicus 81 Zmym5 ENSRNOG00000029220 ENSRNOT00000047731 2 1 1 80 15 37050117 37056231 CAATCCTGATTCTTGTATCTCCC 59 37050059 37050078 ACTGGTGATAAAGAATCCGC 58 NA Rattus norvegicus 81 Lingo4 ENSRNOG00000022863 ENSRNOT00000036656 2 1 1 89 2 195623680 195626820 CTCACACTATGCACAAATCGA 59 195626871 195626889 CCCTCACAGGTGATAACCC 60 NA InUTR Rattus norvegicus 81 Psd2 ENSRNOG00000019177 ENSRNOT00000026112 2 1 1 80 18 28800892 28804261 GAGCACTCAGAACCTTCCT 59 28804305 28804323 GGGAGAAGTGGGTAAGGAC 59 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190 3 1 2 81 6 96165189 96165571 CTCGGTCTACAGAATGACCA 59 96153212 96153233 TCTATTCTTCAGACAGGGATCG 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000087366,ENSRNOT00000085770,ENSRNOT00000024733 3 3 3 80 9 94940174 94942940 ATGTAGGGAAGAGCTGTGG 59 94942983 94943002 GGATCTTGTCCTCTTCAGCA 60 NA Rattus norvegicus 81 Rn60_7_0058.1 ENSRNOG00000056345 ENSRNOT00000079966 3 1 1 60 7 5624948 5624969 CTTGAAGATTTCATGCTCAGAC 58 5624988 5625008 CAGTGCACAAATAATCACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neil2 ENSRNOG00000010696 ENSRNOT00000014198 2 1 1 83 15 46377580 46377599 CTGGGTGAATGACTTCTCCA 60 46375404 46377534 AAATGGAGTACCAGCCTGG 59 NA Rattus norvegicus 81 Kctd18 ENSRNOG00000027091 ENSRNOT00000029879 3 1 1 168 9 64905114 64911594 TCAGGTGATCTGACAGGAG 58 64865032 64865051 GATATCTCGCATCTCCTCTG 57 NA InUTR Rattus norvegicus 81 Plcl2 ENSRNOG00000013368 ENSRNOT00000018146 1 1 1 80 9 1878096 1878114 GAGGTGTTCAAGAATGCCC 59 1875738 1878054 GAAAGAAACCACTGCATTCTG 58 NA Rattus norvegicus 81 Rhbg ENSRNOG00000019412 ENSRNOT00000026396 3 1 1 81 2 187611763 187612232 CTTATGGAGATGGCCTGCA 60 187611700 187611718 AGCTGATACATGGCCTGAG 59 NA Rattus norvegicus 81 Olr128 ENSRNOG00000016052 ENSRNOT00000021468 2 1 1 60 1 168930747 168930768 GGTCTCTTTCTTTCACAATCAC 58 168930708 168930729 GATTCCAATCAGAACATACCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnrg ENSRNOG00000021831 ENSRNOT00000032514 1 1 1 80 15 41938382 41938400 GACCTTCTCACCATGACCT 59 41938443 41941981 TGGAAATGTACCTGACTCCA 58 NA Rattus norvegicus 81 Magebl1 ENSRNOG00000043508 ENSRNOT00000067446 1 1 1 108 X 60940901 60942812 TCTGGTCAATGTTCTTGGGA 59 60940706 60940724 TATGGTCAGGAGAGTTGGC 59 NA InUTR Rattus norvegicus 81 Ephx4 ENSRNOG00000023389 ENSRNOT00000037101 2 1 1 84 14 3363950 3370675 GATTTCAAGGCTTTGAAACACC 59 3363887 3363908 CTAGATCTTCTGTTGTCAGCTG 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271,ENSRNOT00000035888 3 2 2 80 15 45926333 45927165 TGCTATCAAGGCTGGATGG 60 45926271 45926289 GTCGTAAGTCCTTCTGCCT 59 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073,ENSRNOT00000020994 3 2 2 81 1 196958940 196958958 CATCGAACAACTTCCTGCA 59 196959003 196960356 TAGACTTTGAATTCCGCCG 58 NA Rattus norvegicus 81 Vps45 ENSRNOG00000021173 ENSRNOT00000028751 2 1 1 80 2 198184040 198184611 CATGGATAAAGAGACGACTGG 58 198183980 198184002 TCGAAGAGGTATACTTCCTTCTG 59 NA Rattus norvegicus 81 Pcdhgc3 ENSRNOG00000019799 ENSRNOT00000026947 3 1 2 80 18 30952871 30954311 TAGCCAATCTGAAGTTCCTGG 60 30964433 30964452 GTATCGAACTGGTTGTTGGG 59 NA Rattus norvegicus 81 Actl11 ENSRNOG00000032642 ENSRNOT00000047309 2 1 1 60 8 116709865 116709885 TGATACCCAGATAGTGTCCAG 59 116709907 116709925 TTGCTGGTTATTGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msx3 ENSRNOG00000046776 ENSRNOT00000074875 2 1 1 197 1 212516988 212517006 CACATAGAGCAGGGACCAC 60 212516190 212516208 TTTGTGTTTGCGAAGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Guca2a ENSRNOG00000008849 ENSRNOT00000011867 2 1 1 89 5 138685645 138685663 CATGAATGCCTGGTTGCTG 60 138685716 138686511 GAAAGGTCTCCATCCTGCA 59 NA InUTR Rattus norvegicus 81 Erp27 ENSRNOG00000005787 ENSRNOT00000055691 1 1 1 80 4 170898941 170901842 GAGTACAGCCCTATGATTGG 58 170898880 170898900 GGAAGCCTTGTTCATTATCAG 57 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245,ENSRNOT00000085005 1 2 2 80 1 101505751 101505771 CTTGTCACCATGAGCTATGTC 59 101505813 101505952 CCGAGTGTATACTGCTCCT 58 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000064245,ENSRNOT00000085005 3 2 2 80 1 101505751 101505771 CTTGTCACCATGAGCTATGTC 59 101505812 101505952 CCGAGTGTATACTGCTCCTC 60 NA Rattus norvegicus 81 RGD1564878 ENSRNOG00000049074 ENSRNOT00000059672 2 1 1 80 15 35131350 35132409 AAGCTGGAGCAGTTAAAGAG 58 35131289 35131309 ACTGAATAAACGCCATGTAGG 59 NA Rattus norvegicus 81 Rn60_7_0063.2 ENSRNOG00000059341 ENSRNOT00000081851 2 1 1 60 7 6165154 6165174 AAGAACAACACGATAACCACC 59 6165194 6165214 TCTGAAGTTGAGGATCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0063.2 ENSRNOG00000059341 ENSRNOT00000081851 3 1 1 60 7 6165155 6165174 AGAACAACACGATAACCACC 58 6165194 6165215 ATCTGAAGTTGAGGATCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 1 1 3 160 4 78378381 78382295 TGCACTCAGAAGAGAATGGA 59 78383697 78383715 GTTCCTCAAAGCCATGGTC 59 NA InUTR Rattus norvegicus 81 LOC100360439 ENSRNOG00000029560 ENSRNOT00000043110 3 1 1 76 12 13461898 13461916 AGATATGATCCGGGAGGTG 58 13461840 13461858 TGTCCTTGGACACCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc20 ENSRNOG00000028415 ENSRNOT00000036151 2 1 1 80 5 137263451 137263469 GCTTCGAAACATGACCAGC 60 137263309 137263408 GATCGTGAACCACTTGACAG 59 NA Rattus norvegicus 81 S1pr5 ENSRNOG00000020901 ENSRNOT00000028380 3 1 1 70 8 22269977 22269995 CTATGTGCTCTTCTGCGTG 59 22269925 22269943 AAATCCTTGCATAGAGCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nipsnap1 ENSRNOG00000008374 ENSRNOT00000011158 3 1 1 81 14 85132232 85132398 AACCAACAAGGAGTACCTAGAG 59 85132439 85132458 GAATTCCAGAAGCAACTGGT 59 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797,ENSRNOT00000087330 2 2 2 89 17 39511103 39511881 TCAGATACATGTAGAGCTCTACC 59 39512725 39512747 GCAGTCTTGTCTTTCCTAATCAC 60 NA Rattus norvegicus 81 Cnih2 ENSRNOG00000020247 ENSRNOT00000027421 1 1 1 80 1 220479844 220479863 GCATTCTGCTACATGCTCAC 60 220476360 220479804 CTCATCAAAGGCTATGATGTGC 60 NA Rattus norvegicus 81 RGD1308706 ENSRNOG00000017090 ENSRNOT00000023169 3 1 1 99 19 22699950 22705965 ACCAACAGATTCCTGTTGC 58 22706028 22706046 GACGGTGGTGATTTCTCTG 58 NA Rattus norvegicus 81 RGD1566320 ENSRNOG00000036971 ENSRNOT00000055588 3 1 1 87 3 138765177 138766039 CGAAGATGTCAGACTATGGG 58 138766086 138766107 ATCGCTAAATCAGAGTCTTCAC 58 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 1 2 2 80 1 189905628 189905649 CTGAAGCTCTTGTTCTCAAGTC 59 189905464 189905587 AGCCACAGAAAGATCTGGT 59 NA Rattus norvegicus 81 Nat8l ENSRNOG00000049351 ENSRNOT00000074734 1 1 1 85 14 82046614 82046632 GATTCTGGCCTACCTGGAG 59 82044351 82046565 AGAAACAGGAACCAGGTGG 60 NA Rattus norvegicus 81 Mir3560 ENSRNOG00000036567 ENSRNOT00000054671 1 1 1 78 X 16117947 16117965 CAGACCAGGCTTACCTTCC 60 16117887 16117905 AATCCTTTGTCCCTGGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000086426,ENSRNOT00000090139 3 3 3 80 8 90936509 90937400 ACAAGCTGAAGGAGAAGGAG 60 90936448 90936468 CTTTCTTTGGAGAGGACTTGG 59 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 1 2 2 80 18 28039110 28039129 TCCAATAATGAAGAAGGCGT 57 28039171 28042803 AGCATTGATAACCTGAGGAC 57 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 2 2 2 80 18 28039111 28039130 CCAATAATGAAGAAGGCGTG 57 28039172 28042804 CAGCATTGATAACCTGAGGA 57 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 3 2 2 80 18 27977856 27978329 AGCTGAAAGTTGTGGAAGAC 59 27978371 27978390 GAGCTCTGTACTGTATCCCT 58 NA Rattus norvegicus 81 Serpinb13 ENSRNOG00000028194 ENSRNOT00000031789 3 1 1 80 13 27051126 27061746 TGGCCTAGAGAAGATAATCGA 58 27061787 27061806 TTCCTTTGCTTCAGTTGTCC 59 NA Rattus norvegicus 81 Ppp1r17 ENSRNOG00000012235 ENSRNOT00000016414 1 1 1 82 4 86286025 86291233 TTTGTTGCAGGTTTGACTCTC 59 86291277 86291295 GCTAGCTTGTCACCATCCA 60 NA Rattus norvegicus 81 Pcsk5 ENSRNOG00000012036 ENSRNOT00000016164 2 1 1 80 1 236276502 236277452 ACAAATCAAGACCATTCGCC 59 236277493 236277513 TGATGGTTGGGATTATCCGAG 60 NA Rattus norvegicus 81 Rasgef1b ENSRNOG00000002345 ENSRNOT00000003207 1 1 1 80 14 12022802 12023710 ATTCAGTGAAGACGCTCTC 57 12023753 12023772 GACTTCCATCTGTCCTTCTC 57 NA Rattus norvegicus 81 Rn60_X_0636.4 ENSRNOG00000048066 ENSRNOT00000072905 2 1 1 60 X 63002140 63002158 CAAGTACAGCACAGTCCCT 59 63002098 63002119 TCTGTTGGTAGCCTTACTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap31 ENSRNOG00000003088 ENSRNOT00000004138 1 1 1 80 11 64691760 64691781 GAGTTCATACTGAATCACGCTG 60 64691822 64694501 GATAGTGCGGCTTTCATCC 59 NA Rattus norvegicus 81 Rn60_7_0099.2 ENSRNOG00000051213 ENSRNOT00000076768 2 1 1 60 7 9731234 9731253 AAAGGAATGTCCCATACGTG 58 9731193 9731211 CCTGGGTGACACTGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563425 ENSRNOG00000000973 ENSRNOT00000049512 1 1 1 80 12 2031841 2032898 TGCGGAAGTGCAAATACAG 59 2032938 2032960 GAAACTCCTTCTGATACTGAGTG 59 NA Rattus norvegicus 81 RGD1560958 ENSRNOG00000026419 ENSRNOT00000036625 2 1 2 80 1 201906208 201906227 TCTACTGACAGGAGTTGTGC 60 201905334 201906168 TCTAACTCCTTTCCAGTTCCAG 60 NA Rattus norvegicus 81 Sspo ENSRNOG00000025848 ENSRNOT00000035906 2 1 1 80 4 78100354 78100372 CTGTGGACTGTGAGGATGG 60 78100416 78100861 CTGTGGAATGGACTCTGCT 59 NA Rattus norvegicus 81 Clgn ENSRNOG00000003755 ENSRNOT00000005071 2 1 1 80 19 24575595 24575617 GAAGACGCAGAAACTATAGAAGG 59 24575655 24576515 AGCATCCTTCATCTCATCCTC 60 NA Rattus norvegicus 81 Sema4b ENSRNOG00000025167 ENSRNOT00000030914 1 1 1 80 1 142012129 142012151 GAACTCTGCAATATTTCAGCC 58 142012721 142012739 TGTGTTTGCTTGGATCTGG 58 NA Rattus norvegicus 81 Prkar1a ENSRNOG00000049876 ENSRNOT00000071153 2 1 1 83 10 97951767 97952451 CAAGGAGAAATGGATGTGTATGTC 60 97952493 97952511 AATCAAAGCCAGCTCTCCA 59 NA Rattus norvegicus 81 Cd209c ENSRNOG00000042807 ENSRNOT00000061750 1 1 1 80 12 2842698 2843571 GCTGAAGCCTCAAATAAACCA 59 2842638 2842661 GAGAAGAAGTAACAGTTTCCTTGG 60 NA Rattus norvegicus 81 Cd209c ENSRNOG00000042807 ENSRNOT00000061750 2 1 1 80 12 2841752 2841770 CTGGATGGTCCTGTCAGAC 60 2838270 2841709 TTCGTGAAACTGAAGAGCAG 59 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 1 2 2 80 10 109857052 109857071 CAACCTTCCTAACAATGCCA 59 109857113 109858454 GCAATTCGAACTGTGTTCTC 58 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 2 2 2 80 10 109857059 109857077 CCTAACAATGCCAAGCTGG 59 109857118 109858461 CTGTAATGCAATTCGAACTGTG 59 NA Rattus norvegicus 81 AABR07017825.2 ENSRNOG00000047570 ENSRNOT00000071012 2 1 1 60 15 31436330 31436445 GGATAAACTTCCTCCTGAGAG 57 31436465 31436485 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Ss18l1 ENSRNOG00000060010 ENSRNOT00000085718 3 1 1 81 3 175439751 175439771 ACTACAGTGAACAGTACAGCC 60 175439814 175440753 TAGTCACTGTGGCCATCTG 59 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497,ENSRNOT00000030259 2 2 2 146 1 69738151 69739294 CTGACTCCAGGTTGTTGGA 59 69738023 69738041 CACATTGTCCGTGCTTAGC 60 NA InUTR Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 2 2 2 80 13 96232928 96233088 GAAGAAGGATTGTGAAGTTGTG 58 96232869 96232889 TCAGCTGCATGTTTAGTAACC 59 NA Rattus norvegicus 81 Olr1192 ENSRNOG00000033025 ENSRNOT00000044249 3 1 1 60 8 21341183 21341202 CGATCCCTAAGATGTTGGTG 58 21341142 21341162 CATTCTGCATAGGTGATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 3 2 2 81 1 207756471 207756490 ATCAGCAACCCTTACCAGAC 60 207752090 207756429 TCAGAAACACAAAGGATGCAC 60 NA Rattus norvegicus 81 Sfxn1 ENSRNOG00000018279 ENSRNOT00000024707 3 1 1 80 17 11063182 11063202 ATAAACCAGTCCTTCAATGCC 59 11062150 11063141 CGTTCCCAGCTCATTTACAG 59 NA Rattus norvegicus 81 RGD1559683 ENSRNOG00000009905 ENSRNOT00000013198 3 1 1 83 6 27309161 27323858 ATGCCCGGATATAAAGGCC 60 27309096 27309116 TTGGAAGTACTTGAAGGTGGT 59 NA Rattus norvegicus 81 Jtb ENSRNOG00000016379 ENSRNOT00000064752 2 1 1 80 2 189592241 189592471 GGAGAAGCTATCAGTGAGCA 59 189592514 189592532 CACGGAGTACACTCTTCGG 60 NA Rattus norvegicus 81 Tnip2 ENSRNOG00000013805 ENSRNOT00000018477 2 1 1 80 14 81496906 81496924 ACATCTGGCCAAATGTCTG 58 81496968 81499490 GTATGCTCTAGCTCAGCAG 58 NA Rattus norvegicus 81 Mrpl19 ENSRNOG00000006968 ENSRNOT00000009308 3 1 1 81 4 112705240 112705259 GATTTGCATCAAGCGATCAG 58 112703844 112705196 AATCTCCACACCTTGTCCT 58 NA Rattus norvegicus 81 LOC103693060 ENSRNOG00000052550 ENSRNOT00000088406 3 1 1 60 8 43496665 43496684 GGCAGACAGAAAGCATTCTC 59 43496624 43496643 CGTAGGCACAAAGAATAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp19 ENSRNOG00000020204 ENSRNOT00000027418 1 1 1 80 18 27119268 27120620 GTTCCCATCACGTAAGTCG 58 27120664 27120682 CCTCCTGACTTCTGAGTCC 59 NA Rattus norvegicus 81 Olr922 ENSRNOG00000047837 ENSRNOT00000043396 2 1 1 60 11 23062623 23062644 TATTAAACCATCTGCAAGGGAG 58 23062584 23062605 AGTATACAGCAAAGCTACACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc4a1ap ENSRNOG00000004901 ENSRNOT00000006525 3 1 1 80 6 26222607 26225919 ACAGTAGGGAAGTTGCCAC 60 26222545 26222566 CTCCTCTACTTCAGGTTCATCC 60 NA Rattus norvegicus 81 Decr1 ENSRNOG00000008236 ENSRNOT00000011330 2 1 1 80 5 29586017 29586038 ACATAGTTCTCAATGGTACAGC 58 29579788 29585976 GAAAGGCAGCTCCTTTCTG 59 NA Rattus norvegicus 81 Klhl7 ENSRNOG00000010453 ENSRNOT00000013932 3 1 1 80 4 7560320 7560339 AGTAGAACTCAAAGATGCCG 58 7559624 7560280 CTATTCACAGAAATTCTCGCAG 58 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000076918,ENSRNOT00000015576 3 2 2 60 5 74954786 74954806 ACCAAGGTAGAACCCATTGAG 60 74954828 74954846 TGAGTTCGATGTGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk1 ENSRNOG00000017787 ENSRNOT00000023962 3 1 1 80 17 31558574 31558592 CAGATGTGTACAGCTTCGC 59 31557132 31558533 GCTCAGTACAGATGACATTCTC 59 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 2 2 2 91 10 37757309 37764325 CCTGTGCTATGGTATACCAG 57 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Sstr1 ENSRNOG00000048145 ENSRNOT00000073970 3 1 1 76 6 79254396 79254416 ACCTGAAATCTCCAGGTACAG 59 79254821 79254839 TAATAAGCAGCACCATCGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clip3 ENSRNOG00000050104 ENSRNOT00000072819 3 1 1 80 1 90974145 90974249 ATTGGCAATGAGATTCTGCG 59 90974084 90974102 CGCATAATGGAGCAGTGTC 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000009617 ENSRNOT00000013281 3 1 1 81 10 105244439 105244458 TATGAGGATCCAGCTCTGAG 58 105244153 105244395 TCAGCTCAGACTTCTCCAG 58 NA Rattus norvegicus 81 AC120310.1 ENSRNOG00000045684 ENSRNOT00000071131 3 1 1 80 17 14711343 14711364 TGCATTTATGGAGACTTCACTG 59 14709556 14711304 GATTGAATTCCCAACCAGCTC 60 NA Rattus norvegicus 81 Mir880 ENSRNOG00000041210 ENSRNOT00000062963 1 1 1 60 X 151282034 151282055 TACTCAGATTGGTATGAGTCAC 57 151281995 151282015 TGCTCTACTCAGAATGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pyroxd1 ENSRNOG00000012472 ENSRNOT00000016794 3 1 1 80 4 176571618 176571639 TAAGCCAAAGTTAATCTGCGAG 59 176571677 176573745 TGTTTCTGAAATTCCTGAGCAC 60 NA Rattus norvegicus 81 Gjc3 ENSRNOG00000001329 ENSRNOT00000001797 2 1 1 60 12 19166351 19166371 TTTAGGGAGGGTTTGGAAGAC 60 19166311 19166333 GGTTGACAAGTTCTTAAAGAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knop1 ENSRNOG00000048270 ENSRNOT00000075020 3 1 1 84 1 188373472 188373491 AAATTCGAAGCTGACTTCCG 59 188371245 188373430 GTTGACCATTACTGGTCTATTAGC 59 NA Rattus norvegicus 81 Olr1147 ENSRNOG00000006577 ENSRNOT00000008594 1 1 1 60 8 19527451 19527471 ATGAGACTTACCCATGATCCT 58 19527411 19527430 ATGTAAACAGGAAGAAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1147 ENSRNOG00000006577 ENSRNOT00000008594 2 1 1 60 8 19527321 19527342 CCAATGTACCTCTTTCTTTCCA 58 19527282 19527301 CAGTGGTTGTACTTAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC363337 ENSRNOG00000042971 ENSRNOT00000041051 1 1 1 80 19 27861032 27861515 ATCCATGAAGAACAGGCCA 59 27860970 27860988 ATTGACATGACTGCCTCCT 59 NA Rattus norvegicus 81 Nckap5 ENSRNOG00000021553 ENSRNOT00000038020 2 1 1 80 13 42616577 42616595 CGAAGTCTGTTACAGAGCC 58 42582884 42616534 TACTCTTTCCTGGTAGGCTG 59 NA Rattus norvegicus 81 Sac3d1 ENSRNOG00000021003 ENSRNOT00000028509 1 1 1 121 1 221484796 221485850 CTACAACTTGGGTTCCGTG 59 221484693 221484713 CATAGTTGTCTTCACGGAAGG 59 NA Rattus norvegicus 81 Sac3d1 ENSRNOG00000021003 ENSRNOT00000028509 2 1 1 122 1 221484798 221485852 CTCTACAACTTGGGTTCCG 58 221484694 221484713 ATAGTTGTCTTCACGGAAGG 57 NA Rattus norvegicus 81 Mllt1 ENSRNOG00000048736 ENSRNOT00000071211 3 1 1 83 9 10151251 10151270 GGGTCAGATGAGGATGACTC 59 10151316 10152806 ACTGAAGCTTAGCCTGGAC 59 NA Rattus norvegicus 81 Sox7 ENSRNOG00000012049 ENSRNOT00000016503 2 1 1 81 15 47293950 47293968 GGATGAGAGGAAACGTCTG 58 47294013 47297511 CTTCCATGACTTTCCCAGC 59 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 3 2 2 80 18 37007715 37007734 TGACCAGAGACTATCTGACC 58 36988931 37007673 AGTCATGAACCTGGTATGTC 57 NA Rattus norvegicus 81 Farsa ENSRNOG00000003149 ENSRNOT00000004370 3 1 1 80 19 25976986 25977004 CCCAATGGACTATGTCCAG 57 25977046 25977156 TTCCAGGTATACTTGTAGCCT 58 NA Rattus norvegicus 81 LOC100911939 ENSRNOG00000048942 ENSRNOT00000043810 1 1 1 60 8 42285336 42285354 GTTCATCTAAGGGCAGGTC 58 42285376 42285396 GAAACAACAATGATGTGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Napsa ENSRNOG00000019854 ENSRNOT00000026992 1 1 1 80 1 100584900 100584919 GGACCAAGTTTGCCATTCAG 60 100584962 100585520 GGATACCGCCGATAGTCAG 60 NA Rattus norvegicus 81 Olr1320 ENSRNOG00000058809 ENSRNOT00000090359 1 1 1 60 8 43628581 43628601 GTCACCATGTCTTACCAAGTC 59 43628622 43628641 TGAAGCCCATACCATACACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx3-1 ENSRNOG00000015477 ENSRNOT00000020753 3 1 1 83 15 51065540 51065559 GTAGCAGTGTGACTCTGGAG 60 51065605 51066434 AATGTGCATCTGACTCGGT 59 NA Rattus norvegicus 81 Mir222 ENSRNOG00000035581 ENSRNOT00000053704 3 1 1 60 X 3683958 3683979 GATCCTGTCTTTGGTAATCAGC 59 3683998 3684018 TAGATGATGCCATCAGAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563378 ENSRNOG00000048574 ENSRNOT00000050544 2 1 1 60 X 45637566 45637584 TCAAGCGATTCTTCCTGAG 57 45637608 45637626 AACACAAACATCTCCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000036654,ENSRNOT00000086418 2 5 6 105 4 157545530 157545549 ACATCCGTATCCATTCAGGG 59 157545617 157546299 ATCTTGGAGTGAATCCGGG 59 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000072928 3 1 2 81 3 134441436 134441456 AGAGTGTGAACTTCCTGAAGG 60 134441496 134441519 AGGAAGGTCAGTATTACATGCA 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599,ENSRNOT00000004577 1 2 2 80 13 80690652 80690670 TGATCAGCCTTACTGGGTC 59 80686842 80690612 TACAGAGCCCTTTGAATACTCTC 60 NA Rattus norvegicus 81 Spink6 ENSRNOG00000046265 ENSRNOT00000072078 1 1 1 60 X 43044946 43044964 AGGTGTCTTTCTGCTCCTC 59 43042272 43044922 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Rai2 ENSRNOG00000006670 ENSRNOT00000008703 2 1 1 186 X 34794511 34794529 GGTGACAGCAAAGACAGAG 59 34734208 34734226 TTGAAAGGTTCTGGGACTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524,ENSRNOT00000074278 2 2 2 80 2 173798984 173800666 TTTAATTGCAACTGCTGGCA 59 173798923 173798946 CATAGAACACCAACTGGTTTAGAC 60 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638,ENSRNOT00000010113 1 2 2 69 13 90706829 90706847 GTAGTCATTCTCGAGGGCA 59 90704225 90704243 CTACCAGGTACGAGCTTCG 60 NA DesignNoJunction Rattus norvegicus 81 Slc38a9 ENSRNOG00000009851 ENSRNOT00000013218 1 1 1 80 2 44564069 44564091 CTATTCGCTTAGGATTCCATCTG 59 44564128 44574928 GAAACTGAGCTCTTATCTCTGG 58 NA Rattus norvegicus 81 Olr1280 ENSRNOG00000050953 ENSRNOT00000073657 1 1 1 60 2 115075120 115075139 ATTCATGTACCTTCAGCCCT 59 115075162 115075180 CACAGACGACACTTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Six6os1 ENSRNOG00000031655 ENSRNOT00000041409 2 1 1 85 6 95793123 95795051 GCTGTAGTAACTGGAAGCCA 60 95793057 95793081 GGTTTCTTGGTAAGTAGTAAGTTGG 60 NA Rattus norvegicus 81 Il33 ENSRNOG00000016456 ENSRNOT00000022056 1 1 1 80 1 248141757 248141780 CTCCGTTATTACGAGTCTTCCT 60 248143224 248143244 AGGACTCATGTTCACCATCAG 60 NA Rattus norvegicus 81 Ubn1 ENSRNOG00000003019 ENSRNOT00000061236 1 1 1 80 10 10714341 10714362 TTGCAGTTTAGACAAGCTTCAG 60 10713671 10714301 CAACTTCCGCTTCTTTGGAG 60 NA Rattus norvegicus 81 Xpo4 ENSRNOG00000010137 ENSRNOT00000013901 3 1 1 80 15 37870079 37870097 CTCCTCCTTTGTGAACTGC 59 37863785 37870037 TCCTTATCAAGCACTTCTTCC 58 NA Rattus norvegicus 81 Ube2d2 ENSRNOG00000042523 ENSRNOT00000067702 1 1 1 110 18 28594902 28594920 GGCAGGCTACAATAATGGG 58 28595074 28595172 TAAATGCAACCTTAGGCGG 58 NA Rattus norvegicus 81 Noc3l ENSRNOG00000013965 ENSRNOT00000019056 3 1 1 80 1 257479650 257483511 GCAAAGAAAGTGGAAGAAAGC 59 257479590 257479608 TTCTTCTCAGTGCTCTCCG 59 NA Rattus norvegicus 81 Polb ENSRNOG00000019150 ENSRNOT00000026039 1 1 1 80 16 74248985 74249005 CAGAGTCCAGTGGAGATATGG 60 74249045 74251145 GTAACAACTTTGGCTGTTTGC 59 NA Rattus norvegicus 81 Dtwd2 ENSRNOG00000059142 ENSRNOT00000088900 3 1 1 80 18 43905161 43905179 GTCCATATCTGCCAGTTCG 58 43901817 43905117 ACACTTTGCTTTCCTCTGC 59 NA Rattus norvegicus 81 Jak2 ENSRNOG00000059968 ENSRNOT00000087011 2 1 1 80 1 247448065 247448222 TGGACTCTCAAAGAAAGCTG 58 247448264 247448283 TAAGGTTTGCCAACTCTGTC 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252,ENSRNOT00000001203 3 2 2 80 12 6292045 6292066 AGTTTGGAATGTCATCTCAGGT 60 6292103 6296821 CCTTCTCTTTCTTCTCTAGGGTC 60 NA Rattus norvegicus 81 Adamts16 ENSRNOG00000016812 ENSRNOT00000022790 1 1 1 80 1 35067753 35073592 GAAACCAGCGAGTATGACC 58 35073634 35073654 GTGATGCATGATGTCATAGGA 58 NA Rattus norvegicus 81 Olr1561 ENSRNOG00000052915 ENSRNOT00000081342 1 1 1 88 11 43743157 43866643 ATCTACCTGGTCACCATGG 59 43866693 43866713 AGAAAGATGTACATGGGTGTG 58 NA Rattus norvegicus 81 Pif1 ENSRNOG00000015878 ENSRNOT00000021265 3 1 1 81 8 71127599 71129564 TGAGATTAGGCAGATGTTCAG 58 71129606 71129625 ATAATTCCATCTCGTCCCAC 57 NA Rattus norvegicus 81 Socs2 ENSRNOG00000008965 ENSRNOT00000011948 1 1 1 81 7 36497161 36498868 GTCAAACAGGATGGTACTGG 58 36497099 36497117 AAGAAAGTTCCTTCTGGCG 58 NA Rattus norvegicus 81 LOC100911854 ENSRNOG00000050305 ENSRNOT00000072188 3 1 1 80 1 248728140 248728861 GCTATGAGAAAGTGGGTGC 59 248728905 248728923 GGGCATCCTTCTAACACTG 58 NA Rattus norvegicus 81 Rnf219 ENSRNOG00000009690 ENSRNOT00000012881 3 1 1 81 15 88659188 88659207 AAGAACAACAGCCAATGTCC 59 88656944 88659147 CACTGGTTCCTCCAATAATCTC 59 NA Rattus norvegicus 81 Prl ENSRNOG00000017374 ENSRNOT00000023412 3 1 1 83 17 39814558 39817622 ATTAGCCAGGCCTATCCTG 59 39814493 39814511 TTCATCAACTCCTTGCAGG 58 NA Rattus norvegicus 81 Cd70 ENSRNOG00000051015 ENSRNOT00000070806 2 1 1 110 9 9843617 9845263 AGCTGAATCTCACAGACCC 59 9845337 9845355 TACGCAGATTGCCCTTCTC 60 NA Rattus norvegicus 81 Loxl4 ENSRNOG00000015727 ENSRNOT00000021144 2 1 1 87 1 261843193 261844032 TGCTATCAAGGACACCTGG 59 261843124 261843142 CATTTCTGTGCCTGAGCAG 59 NA Rattus norvegicus 81 Sh3bp4 ENSRNOG00000019316 ENSRNOT00000026312 3 1 1 81 9 96271685 96277401 GCTTTAATGATGTCAAAGTGCC 59 96277443 96277461 ATCACTTCCTTTGCGTTCC 59 NA Rattus norvegicus 81 Zfp74 ENSRNOG00000048894 ENSRNOT00000073092 2 1 1 80 1 88235420 88235666 CAACTTAATCACAGTTGGCCC 60 88235360 88235379 ACTACACATGGCTCTTCCTC 59 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 2 1 1 106 5 162032740 162052410 CATCCAAACTGCCCAAAGG 59 162052479 162052498 CTTACACTCGCTGAAACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam175a ENSRNOG00000002165 ENSRNOT00000002956 1 1 1 80 14 10424802 10426833 CAGATACGGAGGGTCTTCTC 59 10426875 10426894 TAACGCTGTCCATCTGTGAG 60 NA Rattus norvegicus 81 LOC689927 ENSRNOG00000042329 ENSRNOT00000066482 2 1 1 110 20 11538582 11538600 CCAGCAGTCTAGCTGTGAG 60 11538490 11538508 GATTCAGAGCAGATGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnh6 ENSRNOG00000008078 ENSRNOT00000010816 2 1 1 80 10 94226593 94226612 CTGAAACTTCAGTGACTCGG 59 94226655 94227428 CACCGTAGCTTAGGGTCTG 60 NA Rattus norvegicus 81 Cdk15 ENSRNOG00000022899 ENSRNOT00000071819 3 1 1 80 9 66131576 66147984 AGCTTCCTGATGAGGAGTC 59 66148028 66148046 TGTAGGAGGCAGAAAGGTC 59 NA Rattus norvegicus 81 Agbl5 ENSRNOG00000008612 ENSRNOT00000011635 3 1 1 80 6 26854291 26854310 ACTACGAGTTCAACGTATGG 58 26854021 26854249 TGAAGTAGAACCATGACCTG 57 NA Rattus norvegicus 81 Serpinb5 ENSRNOG00000002640 ENSRNOT00000003625 1 1 1 80 13 26916735 26920062 CAGAATCAACAAGACAGACACC 60 26920100 26920121 ATGTCATCAATGTTACCCAAGC 59 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000075999,ENSRNOT00000007958 1 2 2 81 7 115968007 115968025 GACTGCGTCAAGATCACAC 59 115967552 115967963 AAGGAAACACTATCTCCCGG 59 NA Rattus norvegicus 81 AABR07054522.2 ENSRNOG00000058577 ENSRNOT00000073941 2 1 1 89 3 158964364 158964383 TTCCTCAGTGATTACACCCA 58 158964551 158964569 AAGTAGAGCTGGGTCATGC 60 NA DesignNoJunction Rattus norvegicus 81 Ints4 ENSRNOG00000012552 ENSRNOT00000016770 3 1 1 80 1 162500620 162502780 GAAGTAGATTTCTTTCAGAGGTGC 60 162502817 162502837 GAGATCAAGCAGTTTGTCCAC 60 NA Rattus norvegicus 81 Fv1 ENSRNOG00000019132 ENSRNOT00000025846 1 1 1 131 1 100224731 100225040 TACTTCCCTTCAGCCTCTG 58 100225135 100225153 TATGTGTAGTAGCGGTCCC 58 NA InUTR Rattus norvegicus 81 RGD1563570 ENSRNOG00000029461 ENSRNOT00000046342 2 1 1 60 14 43694359 43694377 CAAACAGCCAAATTCTGCC 58 43694399 43694419 CTTGCCGTTCTTAATGAGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inip ENSRNOG00000017047 ENSRNOT00000022987 3 1 1 133 5 77022132 77029501 GCAAATCCTTCAGGACAAGG 59 77021041 77022036 GACAGGGAGATGCTAGCTC 59 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 1 1 1 103 12 11734975 11734996 TACAGTTCCATGCTGGAGC 60 11735063 11735081 GTTATCCTCCAGGTGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000060802 2 1 3 93 11 45888302 45888320 AGAGACAAGGATGAGCGAG 59 45888377 45902394 GAAATGCAGGAAATGGGCA 59 NA Rattus norvegicus 81 LOC100362342 ENSRNOG00000050554 ENSRNOT00000073093 2 1 1 85 1 209722690 209722815 TGAGCTCAATGATTCTGCAG 58 209722624 209722643 GGTGACACTTACAGATTCCC 58 NA Rattus norvegicus 81 LOC100910719 ENSRNOG00000053256 ENSRNOT00000045736 1 1 1 60 15 35586410 35586429 CTCAGAGAAGCCAGAACTCC 60 35586447 35586470 GATCAGATAGATTCCAGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam173a ENSRNOG00000019684 ENSRNOT00000026641 3 1 1 196 10 15160507 15160899 AGATCTCTGGAAGGTGAGC 59 15160175 15160193 CATAGGCCCAAACTCTGTC 58 NA Rattus norvegicus 81 Fam98c ENSRNOG00000024036 ENSRNOT00000056964 3 1 1 85 1 88097289 88097754 CATGACAAGATCTCTGAGCTG 59 88097224 88097242 CATCGAGATGCATCCAGTG 59 NA Rattus norvegicus 81 Irak1bp1 ENSRNOG00000008984 ENSRNOT00000068482 1 1 1 81 8 90350569 90350590 GAGAATGTAACTGTGACAAAGG 57 90350629 90359372 CAGTAAATGTAATGCAGACCTC 57 NA Rattus norvegicus 81 Olr1736 ENSRNOG00000061930 ENSRNOT00000075084 2 1 1 60 20 1765393 1765412 TTAAGCCATTGCTGGATCTG 58 1765435 1765453 GTATTGAGCAGCCAAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a10 ENSRNOG00000023226 ENSRNOT00000035240 2 1 1 117 2 193898571 193898589 ATGGAAAGGGAGTTCCCTG 59 193900909 193900928 ATAGAAAGCTCTGGAAGCCC 60 NA DesignNoJunction Rattus norvegicus 81 Aebp2 ENSRNOG00000008929 ENSRNOT00000035507 2 1 1 80 4 174831365 174862203 AGAGGTTGAAGAGTTCCTCG 59 174862246 174862264 TTCTCATGGCTGTGAGGTC 59 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000088763 1 1 2 60 20 1814968 1814992 GGACATTTGAGTTTGGATCTTAGAG 60 1814932 1814955 AGAAGATATTCAGCCTATCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj11 ENSRNOG00000021128 ENSRNOT00000028685 3 1 1 60 1 102105424 102105443 TCGTGCAGAATATCGTAGGG 60 102105383 102105401 TTCATGAAGATGCAGCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690273 ENSRNOG00000053485 ENSRNOT00000088755 3 1 1 60 8 43523829 43523847 GCTACCCTCTACGCTACTC 59 43523787 43523805 CCTATGGCTAGGATGGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp54a ENSRNOG00000032776 ENSRNOT00000052076 3 1 1 80 6 76017900 76018453 TAAACTTCTTGGAATGGGTGAC 59 76018491 76018512 ATAAGTGCCTCGTTATCATCCA 60 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 1 1 1 60 X 48779565 48792366 GATTGGCAGATCGCTACTC 58 48792388 48792408 ATGCAATGAGTATGATGGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Noxa1 ENSRNOG00000009286 ENSRNOT00000012375 2 1 1 80 3 2304542 2304564 CTAGTAGAAGCAATCTCCAAACG 59 2304297 2304504 TACCTGTTTCTGCACTTTGTC 59 NA Rattus norvegicus 81 Banf1 ENSRNOG00000020460 ENSRNOT00000027734 1 1 1 95 1 220744727 220745382 TTGACAAGGCGTATGTGGT 60 220744650 220744668 CATTGGCACCACATGTGTC 60 NA Rattus norvegicus 81 Rictor ENSRNOG00000011341 ENSRNOT00000029565 3 1 1 80 2 56087582 56087600 AAATGTTCGCACTCCAGAC 59 56087644 56088063 CCAATATTTCCCAAGGCCC 59 NA Rattus norvegicus 81 Phactr1 ENSRNOG00000014264 ENSRNOT00000046523 2 1 1 80 17 23661585 23684388 ATGGATGGACCAGATCCTG 59 23684432 23684450 TTTCTTTGGAGGTAGCGGA 59 NA Rattus norvegicus 81 Phactr1 ENSRNOG00000014264 ENSRNOT00000046523 3 1 1 80 17 23759826 23759847 CATTCGGAAGGAACTCAATGAG 60 23759885 23761072 CGATGAAACCTGGTTAAGTGTC 60 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472 3 2 4 162 19 753484 753502 CATACCCGCCTTAGTTGTG 58 755472 755925 GTCATGGACCAGCTTTCTC 58 NA Rattus norvegicus 81 Npr3 ENSRNOG00000019184 ENSRNOT00000025966 1 1 1 80 2 61890305 61892042 CTTGCAAATCATGTGGCCT 59 61890243 61890261 CCATTAGCAAACCAGCACC 60 NA Rattus norvegicus 81 Ctsf ENSRNOG00000019708 ENSRNOT00000026718 3 1 1 80 1 220117767 220118525 AAAGAATTTGGGAGGGCTG 58 220118566 220118587 ATCTGTGTTGAGAAGTTACAGG 58 NA Rattus norvegicus 81 Gpr176 ENSRNOG00000005971 ENSRNOT00000007882 3 1 1 80 3 110046057 110049619 CTGGACAGGTACTATTCAGTC 57 110045997 110046017 GATGTACATCACTAGTTCCCG 58 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000049216 ENSRNOT00000071160 3 1 1 62 1 121201295 121201314 CAGGCTGCTGGTTATATTCC 59 121201252 121201270 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35d3 ENSRNOG00000012311 ENSRNOT00000016400 3 1 1 239 1 15301199 15301217 CTTGTCACCATGCTCATCG 59 15300113 15300132 GACATATTGTGCGGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AC093965.1 ENSRNOG00000032531 ENSRNOT00000019871 1 1 1 76 10 40323225 40323243 CTTTAAGGCTTTCGCCAGC 60 40323286 40323304 CTTCTTTCGCCCTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC688176 ENSRNOG00000017329 ENSRNOT00000023259 2 1 1 84 14 82353910 82353928 ACTCAAACCTACCTGTGCA 59 82353972 82354406 GAGTTCAGCCTAATATCAAAGGG 59 NA Rattus norvegicus 81 Rwdd3 ENSRNOG00000029893 ENSRNOT00000040080 1 1 1 80 2 224713363 224723004 GCTGTTCAGAGACAGATGG 58 224713301 224713319 ACTCTAAGGGCACATCCTC 59 NA Rattus norvegicus 81 LOC680367 ENSRNOG00000047843 ENSRNOT00000071798 2 1 1 60 8 41702572 41702590 CATATCTTGCTGCTCCCAC 58 41701867 41702549 CACAGGAATCTAGCAGGGAG 60 NA DesignRelaxed Rattus norvegicus 81 LOC685203 ENSRNOG00000038738 ENSRNOT00000059159 2 1 1 60 9 53440534 53440555 ACATCCAATACTACAACATCCC 58 53440574 53440594 CAATCAATGGTGATGTCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc7a15 ENSRNOG00000006119 ENSRNOT00000039492 3 1 1 80 6 33734858 33738055 AGAACCCAAAGCAGAACCT 59 33734796 33734818 TGATATTGACCAGGACATACAGG 60 NA Rattus norvegicus 81 Olr1343 ENSRNOG00000047906 ENSRNOT00000051686 3 1 1 60 9 99659281 99659299 CTAGCCATCATCCTCACTG 57 99659239 99659258 GGAAGTAGTACATGGGTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogfod3 ENSRNOG00000036668 ENSRNOT00000054925 1 1 1 86 10 110386072 110386091 CTTAGAGGACTTCGGTGGAG 59 110378891 110386023 AATGAGACTCGACCAGCTC 59 NA Rattus norvegicus 81 Ogfod3 ENSRNOG00000036668 ENSRNOT00000054925 2 1 1 87 10 110386072 110386091 CTTAGAGGACTTCGGTGGAG 59 110378890 110386022 GAATGAGACTCGACCAGCT 59 NA Rattus norvegicus 81 Tacr3 ENSRNOG00000009372 ENSRNOT00000012473 3 1 1 80 2 240021819 240021840 CAGAACTTCTTTCCCATCACAG 59 240021877 240052591 AATAGCCATATACCTGTCCACTG 60 NA Rattus norvegicus 81 Olr1738 ENSRNOG00000029883 ENSRNOT00000041883 1 1 1 60 20 1787546 1787565 GCTTGAGAACTTCTTCTCCA 58 1787588 1787606 AAGCTGAGTTATGCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1738 ENSRNOG00000029883 ENSRNOT00000041883 2 1 1 60 20 1787732 1787751 GTTGACTGTTGTCATCTGGG 59 1787772 1787792 CGTCAATATGGAGTGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr484 ENSRNOG00000045807 ENSRNOT00000012959 3 1 1 60 3 73522853 73522872 CCCATGTACTTCTTCCTCAG 57 73522812 73522830 CAATGACAGTTGAGTTGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dock8 ENSRNOG00000015894 ENSRNOT00000015668 3 1 1 80 1 243055172 243057621 CATCTTCTTCAAGCAGGAGG 58 243057661 243057682 GACGAAGATCTCTTGTAGTCAG 58 NA Rattus norvegicus 81 Polr3d ENSRNOG00000010028 ENSRNOT00000013390 3 1 1 81 15 52130240 52130402 TTCTTTCCTGCAGGAACTG 58 52130177 52130195 GTGCTTCACATGTCCTAGG 58 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 1 2 2 80 4 79912005 79923395 CAGTGCCATTTACTTCACGG 60 79923438 79923456 CCATCTCTGATCGGGACAC 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000075860 1 1 4 80 3 57260257 57267221 TATTCACCCTGACAGGATGC 60 57260196 57260216 TCCCGAAACAATAGCATTCCT 60 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 1 1 1 71 1 89132655 89132841 TCTACTTCAGCATCCAGGC 59 89132602 89132620 GAGATGAGTTCCGGTAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Pkia ENSRNOG00000012095 ENSRNOT00000016567 1 1 1 88 2 96600312 96600330 TTGGTTTCCTCTGCAAGTG 58 96596516 96600262 CCATCATCTTCACCTTCTGTC 59 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000084868 2 1 6 83 1 262001412 262001430 CCAGAACATCCCAGTCCAG 60 262001189 262001366 ATGCTGTCTGTGTCTGTCTC 60 NA Rattus norvegicus 81 Icam2 ENSRNOG00000025143 ENSRNOT00000035474 3 1 1 82 10 94571180 94572449 CATCAGGGTGTATGAGCCT 59 94571116 94571134 CAATGGTGAAGGCTTCACC 59 NA Rattus norvegicus 81 Ssh2 ENSRNOG00000014285 ENSRNOT00000019410 1 1 1 80 10 62751285 62762632 CATAAGGCTGGCTGTAAGAC 59 62751224 62751244 TGTCTACCGTTAGTTGAAACC 58 NA Rattus norvegicus 81 Col14a1 ENSRNOG00000026415 ENSRNOT00000067649 3 1 1 80 7 95181881 95181901 TCAGCGTTTATACAAAGCTCC 59 95181941 95185953 GTTCTGTGGGAAGTGATTGTG 60 NA Rattus norvegicus 81 Pdzrn3 ENSRNOG00000057556 ENSRNOT00000090506 3 1 1 80 4 133720703 133720721 TGCACATGGATATGCTCGA 59 133719889 133720659 CCTCATGCTTCTTCTGCTG 59 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 3 2 2 80 17 45439905 45441047 TCTTTCCTAAAGAGCTCCTGC 60 45439845 45439863 GACCTTCATGGGATCCCAG 60 NA Rattus norvegicus 81 Bub1b ENSRNOG00000007906 ENSRNOT00000010406 2 1 1 80 3 110387775 110387793 ACATCTGTACCCAGTGTGC 60 110387834 110389694 TTTACATGGCGTCATTACTGTC 59 NA Rattus norvegicus 81 Sbsn ENSRNOG00000021015 ENSRNOT00000028526 1 1 1 86 1 89204361 89204379 AAATGAACAGGTTGCAGCA 59 89204429 89205736 CTTGATGAGGCCCATTCAG 58 NA Rattus norvegicus 81 Mir3579 ENSRNOG00000035473 ENSRNOT00000053596 2 1 1 61 6 133860546 133860570 CTTTGATAATGAGAAGATGTGGACC 60 133860509 133860530 CATAGAACATGCGCTACTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3579 ENSRNOG00000035473 ENSRNOT00000053596 3 1 1 61 6 133860545 133860566 GATAATGAGAAGATGTGGACCA 58 133860505 133860523 TGACCATAGAACATGCGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Manf ENSRNOG00000014201 ENSRNOT00000019107 1 1 1 80 8 115624630 115624649 CCCTGTGGAGAAGATCTGTG 60 115623614 115624587 AGGTCAATCTGCTTGTCGT 59 NA Rattus norvegicus 81 Mir204 ENSRNOG00000035472 ENSRNOT00000053595 1 1 1 60 1 240403037 240403056 TTTGTCATCCTATGCCTGAG 57 240403079 240403097 AATTGAACGTCCCTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx8 ENSRNOG00000010461 ENSRNOT00000013979 1 1 1 80 2 44906838 44906860 CTTCTACTCCTTTGAAGTGAAGG 59 44906316 44906798 ACAACTAGGGAAGCTTTGC 58 NA Rattus norvegicus 81 Cuzd1 ENSRNOG00000029945 ENSRNOT00000050519 3 1 1 80 1 201892780 201892798 ATGAGAACTGCACTTGGAC 58 201890579 201892736 CTGGATCCAACTGGATGTG 58 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 1 2 2 80 9 10021187 10021291 CATGACCCAAACAAAGCTG 58 10021335 10021353 TTGCTGGTAGTAGTGGGAG 58 NA Rattus norvegicus 81 Adam12 ENSRNOG00000018384 ENSRNOT00000024974 1 1 1 80 1 206074017 206187199 CTTGGAGAGGAATGAGGGAC 60 206073956 206073976 GTGAAGGAGACATCACTACCA 59 NA Rattus norvegicus 81 Olr756 ENSRNOG00000048607 ENSRNOT00000040285 2 1 1 60 3 102620367 102620387 CTCATCAAAGGCACTATCCAC 59 102620408 102620427 CCCAAAGAATAGCACAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ulk2 ENSRNOG00000002763 ENSRNOT00000003792 2 1 1 80 10 48114150 48125112 CTCTATGATGTTCAGGAATTACCC 59 48113137 48113158 CAAATAATCTGCCAGATCTCCA 58 NA Rattus norvegicus 81 LOC498155 ENSRNOG00000032693 ENSRNOT00000042421 1 1 1 80 12 17861013 17861036 TAAGAATGAGTATCCTAACCTGCC 60 17860666 17860974 CTATAACCGGAATGGGCCT 59 NA Rattus norvegicus 81 Cryz ENSRNOG00000028319 ENSRNOT00000032808 1 1 1 80 2 260891089 260891107 TTGAATTTGGTGGACCGGA 60 260891150 260895046 TGATTAGGACCTGATGGCTC 59 NA Rattus norvegicus 81 RT1-M6-2 ENSRNOG00000040052 ENSRNOT00000041500 2 1 1 80 20 2076847 2077116 GCGATAAAGGGCATCATAGAC 59 2077158 2077176 CGACACTCCATGTTGTCAG 59 NA Rattus norvegicus 81 Gga1 ENSRNOG00000008897 ENSRNOT00000063876 1 1 1 80 7 120113723 120113887 GGACCTCATGAAGGAACTG 58 120113931 120113949 TTGTCTTCTGTGTCACTGG 57 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629,ENSRNOT00000029487,ENSRNOT00000027933 1 4 4 80 1 82341432 82341452 GATACTATGAGTGTGAAGCCC 58 82340896 82341390 CCGGACCATAGATAACGTC 57 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700,ENSRNOT00000083438 1 2 2 80 11 53222746 53224594 AGGAGGTACACTGGATGAC 58 53224637 53224656 TTATCACCGCAGAATGTCTC 58 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000002700,ENSRNOT00000083438 3 2 2 80 11 53168646 53171804 GTTTGCCGAGATATCCTCC 58 53171848 53171866 GCAAACTGAAACAAGGCTG 58 NA Rattus norvegicus 81 Eml1 ENSRNOG00000043143 ENSRNOT00000071733,ENSRNOT00000071863 2 2 2 80 6 132431603 132431622 TCTTCGAGAACACAATGCAC 59 132432519 132432864 TTCGAACACTTCTGATTCCC 58 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 1 3 3 80 17 47320823 47320841 ACCTGACCCTTTGGAAGAG 59 47320882 47321917 ATATACTCTTGCAAACTGTCCC 58 NA Rattus norvegicus 81 Irx1 ENSRNOG00000033609 ENSRNOT00000044690 2 1 1 93 1 33911403 33914380 TTCTCACAGATGGGCTCTC 59 33914437 33914455 AGGGATAATAAGCAGGCGT 59 NA Rattus norvegicus 81 Prss2 ENSRNOG00000032916 ENSRNOT00000018852 3 1 1 81 4 70692343 70693571 GCTATAAGTCCCGCATCCA 59 70693616 70693634 GCAGCATTGACAAACTGCT 60 NA Rattus norvegicus 81 Arl14epl ENSRNOG00000025590 ENSRNOT00000035656 3 1 1 82 18 40983595 40983615 ACAACTCTACTCAAGAGGAGC 59 40983657 40985989 TATCTGTTGCAGTTGCTTCTG 59 NA Rattus norvegicus 81 Lxn ENSRNOG00000013572 ENSRNOT00000018402 3 1 1 80 2 164631389 164631407 TGTAATGTGGCAGAACTCG 58 164629203 164631345 TCGTTTCTTTGCACTTGCT 59 NA Rattus norvegicus 81 AABR07001408.1 ENSRNOG00000033265 ENSRNOT00000045014 3 1 1 60 1 42741273 42741291 CAGAGTATGCATCCTGGCT 59 42741231 42741255 GGGCATGCTTCTAATAATATCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr303 ENSRNOG00000047015 ENSRNOT00000040258 3 1 1 60 1 213095243 213095265 CTTCTTCCTAGTCAATCTTTCCC 59 213095205 213095224 TTTAGGCAAGACAGTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rptn ENSRNOG00000018679 ENSRNOT00000025249 3 1 1 83 2 193724372 193725097 GAGACATCCTTCGGAGACC 59 193725138 193725162 CAACATATCCATTTCTATCTCGGTC 60 NA Rattus norvegicus 81 Il12a ENSRNOG00000009468 ENSRNOT00000012831 3 1 1 80 2 165076984 165077464 TCAATCACGCTACCTCCTC 59 165077508 165077526 CCAGAGACTGGTATGACCC 59 NA Rattus norvegicus 81 Epha7 ENSRNOG00000007030 ENSRNOT00000009899 1 1 1 80 5 43755968 43755992 GAGAGGTATAAAGACAACTTCACAG 59 43756030 43757444 CATCACATCGTCGATGGTC 59 NA Rattus norvegicus 81 Ppm1l ENSRNOG00000046168 ENSRNOT00000074564 3 1 1 82 2 166140221 166140239 TCGAGCAGCAGATCTTGTC 60 166140285 166206871 CAAACACGTTGTTCCTGCT 59 NA Rattus norvegicus 81 RGD1565323 ENSRNOG00000021789 ENSRNOT00000065674 3 1 1 99 17 32973866 32975580 TACAGACGTCAAGAGAAGGG 59 32975642 32975660 GACTACTGTCAGGAGTGGG 59 NA Rattus norvegicus 81 Hmga1 ENSRNOG00000000488 ENSRNOT00000000580 3 1 1 103 20 7137429 7137448 GAAGGGAAGCAAGAACAAGG 59 7138036 7138942 CCTCTTCCTCCTTCTCCAG 59 NA Rattus norvegicus 81 Spdya ENSRNOG00000004534 ENSRNOT00000083858,ENSRNOT00000006073 2 2 2 80 6 23527228 23527247 TAAAGTTACGGGACCAGCTG 60 23510534 23527186 TGGCCATAACCTCTTCACAG 60 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000034237 ENSRNOT00000043244 2 1 1 60 14 33031219 33031238 TCAGAATCAAGCGATTCCTG 58 33031178 33031198 ATCCATTGAGGAATAGGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atrip ENSRNOG00000020670 ENSRNOT00000028055 1 1 1 80 8 117798937 117799361 AGCTGGAACAAGAGGTAGTG 60 117798876 117798895 GACAGTCAGAAACAATGCCA 59 NA Rattus norvegicus 81 Lgi3 ENSRNOG00000011323 ENSRNOT00000015104 3 1 1 83 15 52221093 52221111 CCAGGGATACAGCCTTCTG 60 52221158 52221973 CATTCACCAGTGTCAGGGA 59 NA Rattus norvegicus 81 Nkx6-2 ENSRNOG00000017748 ENSRNOT00000054887 3 1 1 101 1 211923101 211923120 AGAAGACTTTCGAGCAGACC 60 211922826 211923037 TCTGGAACCACACCTTCAC 60 NA Rattus norvegicus 81 Arl11 ENSRNOG00000014653 ENSRNOT00000019646 2 1 1 80 15 41643597 41643618 AAAGAAGCTTGATTGTGGAGAG 59 41643659 41644367 TACATGGAGCTCCTCTGTG 59 NA InUTR Rattus norvegicus 81 Mog ENSRNOG00000000775 ENSRNOT00000001008 3 1 1 80 20 2012625 2012643 TTGTCCCTGTTCTTGGACC 60 2012687 2012985 CAAGAAACTGTCCTGCCAG 59 NA Rattus norvegicus 81 Wee2 ENSRNOG00000026446 ENSRNOT00000036398 1 1 1 80 4 68625192 68625211 TTCTTCTGCAGATTTCCCTG 58 68625251 68626058 AGATGTTACTGGGTTTGATGTC 59 NA Rattus norvegicus 81 Isg20l2 ENSRNOG00000011402 ENSRNOT00000015471 2 1 1 88 2 187304110 187310798 GGAGTCAGATCTTGAAGATACTC 58 187310845 187310864 GGGATGAAAGTACTGTAGGG 57 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 3 2 2 130 17 44757797 44757815 TCACCAAGTACACCAGCTC 59 44756636 44756657 TCAGTCTCCACTCAGATAAGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gdf3 ENSRNOG00000015331 ENSRNOT00000041552 1 1 1 93 4 155421670 155421688 TATGCTACGTGAAGGAGCT 58 155418517 155418535 TCTTGGGAAGGTTTCTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Klhl15 ENSRNOG00000006515 ENSRNOT00000008558 2 1 1 83 X 63358960 63358978 TCTGATGACTCCATCCAGC 59 63388851 63388869 TCAACTTCATACCGCAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Dppa3 ENSRNOG00000022950 ENSRNOT00000031353 3 1 1 80 4 155439992 155440469 GAAGATTTGTTCGGATTGAGC 58 155440742 155440760 TGCAGAGACATCTGAATGG 57 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583,ENSRNOT00000041165 2 2 2 80 20 14578845 14579769 CATCAACATAGGCTGCCTG 59 14579813 14579831 ACCTCGGTGGTCTTTATCC 59 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 1 2 2 88 5 157764183 157764201 CAACTATGCCTCCTGGGAG 60 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 Npy2r ENSRNOG00000049213 ENSRNOT00000072029 2 1 1 60 2 181531266 181531287 CTCTGGGCATCATATCTTTCTC 59 181531227 181531250 CTAACGTGGTTCTTTAGCTTACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftcd ENSRNOG00000001261 ENSRNOT00000001699 1 1 1 96 20 12817086 12817104 GTACCTCTATGGTGAGGCG 59 12816887 12817026 CTGTTTGAGCTTCTCAGGC 59 NA Rattus norvegicus 81 Jam3 ENSRNOG00000009149 ENSRNOT00000012247 3 1 1 90 8 28148511 28148529 TCAGCAGTAAACAGGATGG 57 28148067 28148375 CTGAAGTCACCCTCTTCAC 58 NA Rattus norvegicus 81 Olr1749 ENSRNOG00000048828 ENSRNOT00000073981 1 1 1 60 20 1937283 1937304 ACTGAACCCTCTCATTTATACC 57 1937325 1937343 AAGTCTCCAGAATGCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 2 2 2 80 4 182575594 182575612 ACAGTTGTGCCAACAAAGC 60 182570914 182575550 GATGCGTTCCCTTTCTGTC 59 NA Rattus norvegicus 81 Thbs3 ENSRNOG00000059903 ENSRNOT00000087934 3 1 1 80 2 188534685 188534907 GTGTCATGCCAGTGTAACG 59 188534949 188534969 GTCTGGATAGCCGTCTATGTC 60 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 1 2 2 80 5 152378285 152378305 GTGGATCAGCATCTTGAACAG 59 152377790 152378247 GAGATATGTTTCCTCTGCTTGTC 59 NA Rattus norvegicus 81 Pkp3 ENSRNOG00000015152 ENSRNOT00000020864 2 1 1 80 1 213892777 213892796 GCATCTTTGAGCTGTTGAGG 60 213892837 213894871 ACAGGTTCCATAGAATCCCTG 59 NA Rattus norvegicus 81 Rhbdd3 ENSRNOG00000027032 ENSRNOT00000031914 2 1 1 80 14 85356551 85356570 TCTTGATGTGTCAGTCCAGG 60 85356613 85356716 AGCTGCTGAAGCCTTAGAG 60 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 3 2 4 80 7 116743372 116743391 CCTACAACTGCTGAAAGAGG 58 116743431 116743560 ATAGTAACACTCTCACCCTCTG 59 NA Rattus norvegicus 81 LOC100362023 ENSRNOG00000042449 ENSRNOT00000063891 3 1 1 94 10 40057179 40057197 AGGGAGGTTATGGAGGAGG 60 40056554 40057123 TCACAATGACAGATGAAGGGA 59 NA InUTR Rattus norvegicus 81 AABR07070416.2 ENSRNOG00000050915 ENSRNOT00000074153 1 1 1 130 8 69530707 69530731 CTGACAACATACGTATATCTGTGAG 59 69489040 69489061 GAACAGTGCACAGATTATACAC 58 NA DesignNoJunction Rattus norvegicus 81 Paqr6 ENSRNOG00000026059 ENSRNOT00000036143 3 1 1 84 2 187738936 187738954 TAGACTGTGTCCTCAGCTC 58 187739002 187739101 CACAGGAAGTACCAAGTGG 58 NA Rattus norvegicus 81 Trim10 ENSRNOG00000000782 ENSRNOT00000001016 1 1 1 80 20 2189450 2190863 CCCTACAGGGAACAAATACAG 58 2189390 2189410 TTCTCTTGATTGGGTTTCCTG 58 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 1 2 2 80 3 176098008 176098512 CCACAATCTGAACAGCCAC 59 176098556 176098574 TGTTCTAAGCCCAGCTCAC 60 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005539,ENSRNOT00000064448,ENSRNOT00000005545,ENSRNOT00000088861 2 4 4 80 7 64776376 64786604 TGTTGCAGAATCTGTCATCC 58 64786647 64786665 GTTATTCCAAGCTCCACGC 59 NA Rattus norvegicus 81 Nudt8 ENSRNOG00000017955 ENSRNOT00000024237 3 1 1 87 1 219248679 219248698 AGAAAGGCAACCATAGTCCC 60 219248748 219248856 CTTCATCCACCTCCTCAGG 59 NA Rattus norvegicus 81 Pglyrp3b ENSRNOG00000045617 ENSRNOT00000066410 2 1 1 80 2 191912362 191914614 GTGACATTGCATATCACTTCCT 59 191914653 191914673 TGTGAGAGCCTTCAATAGTCC 60 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 1 2 2 80 12 13902577 13903161 AAATTCAATGTGCTGAGCCA 59 13903200 13903222 CTGTATCTTTGCTAGTCTTCCTG 59 NA Rattus norvegicus 81 Mrpl46 ENSRNOG00000018547 ENSRNOT00000067172 2 1 1 86 1 140476008 140477394 TTACAGCAGGTAGAGGTAGAG 58 140475942 140475960 TTTCTTCTTTGCCAGTCGC 59 NA Rattus norvegicus 81 RGD1561694 ENSRNOG00000029107 ENSRNOT00000040676 2 1 1 60 14 73675121 73675141 AGATACTGCAAAGAAACTGGG 58 73675162 73675181 CGGTTGTTTATCTTTGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000001014 3 1 3 85 20 2101567 2103340 CAAGGAGAGGATATGAGAAAGAC 58 2101283 2101301 TCTTCAGGGAGATCCTCCT 59 NA Rattus norvegicus 81 Uprt ENSRNOG00000021552 ENSRNOT00000033494 2 1 1 80 X 75383123 75395172 TATCATCCGGGACAAGACAG 59 75399403 75399423 CCCTCTTCTACAACAAGTCTG 58 NA Rattus norvegicus 81 Uprt ENSRNOG00000021552 ENSRNOT00000033494 3 1 1 80 X 75383124 75395172 ATCATCCGGGACAAGACAG 59 75399403 75399424 TCCCTCTTCTACAACAAGTCTG 60 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000011659 3 1 2 83 6 51018049 51019008 CAAATCTTTAGCAGAGGGCC 59 51017985 51018004 CCAGGGAGCCTCTTAATCAG 60 NA InUTR Rattus norvegicus 81 Olr1197 ENSRNOG00000048941 ENSRNOT00000049660 1 1 1 60 8 40263267 40263288 GAGCCTATTTGATGGGTTTCTC 59 40263306 40263327 GTCAGATTCATTAGGTTCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000081146 3 1 3 80 9 65049034 65049673 AGCTAAAGAGGAGGAATCCC 59 65049714 65049734 TGGTCAAAGGAAAGTCTTCCA 60 NA Rattus norvegicus 81 LOC100911999 ENSRNOG00000060167 ENSRNOT00000073800 3 1 1 60 8 41987929 41987949 GCCCTTATTTGTTCTGTTCCT 59 41987969 41987989 TAAGCACAAGTTTCCCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pinx1 ENSRNOG00000012012 ENSRNOT00000016027 2 1 1 80 15 47219222 47219241 TCACCAGGATGACTTCAACC 60 47219282 47222990 TTGTTGTCTGAGGAATCTGCT 60 NA Rattus norvegicus 81 AC117091.1 ENSRNOG00000032352 ENSRNOT00000041415 1 1 1 120 13 92197697 92197715 AATGTTTGCTGTCCTTGCC 59 92197800 92197818 TCAGTGACCAGAGATGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 2 1 1 68 10 90930962 90930980 TTCATACCAGAGTGGCAGC 60 90931012 90931518 ACATTGTATACACGGCACC 58 NA DesignNoJunction Rattus norvegicus 81 Nagpa ENSRNOG00000002895 ENSRNOT00000003888 3 1 1 81 10 10575410 10575428 GCTCATCCGTAATGGAAGC 59 10575472 10576830 GCTGAAAGAACCTGTCTCCT 60 NA Rattus norvegicus 81 Catsper3 ENSRNOG00000011374 ENSRNOT00000015163 3 1 1 80 17 8923399 8923418 CCAACTCCTTCCTATTGGTC 58 8909346 8923359 AAAGCTCTGAGATCTCAAAGAC 58 NA Rattus norvegicus 81 Cfl2 ENSRNOG00000045892 ENSRNOT00000072589 3 1 1 123 6 75761696 75761835 CTAGTATTTATATTCTGGGCTCCTG 59 75761512 75761530 AGCCATTTACTTGCCACTC 58 NA Rattus norvegicus 81 Olr1504 ENSRNOG00000045754 ENSRNOT00000050847 2 1 1 60 10 60772101 60772120 ACTTGTCCTTCTCTGACCTC 59 60772060 60772079 ATGTTCTGAAGCAATTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx2-1 ENSRNOG00000008644 ENSRNOT00000011453 1 1 1 60 6 77419327 77419345 CATCTGAACTCCTCTGGCT 59 77419285 77419306 GACCATAAAGCAAAGTAGAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027902.1 ENSRNOG00000050847 ENSRNOT00000074309 2 1 1 80 17 48438241 48438259 AGAGACTGAAGGAACACCC 59 48444117 48444996 TTTCTATACCCATGGCATGTC 58 NA Rattus norvegicus 81 Ankrd61 ENSRNOG00000001048 ENSRNOT00000001382 2 1 1 115 12 12756634 12756653 GAAGACTGCGACACAATCAG 59 12756730 12757857 AAGATAGGCTGTGTCTGCTG 60 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 1 2 3 80 13 50484201 50484219 CCATTTCTTCTGGGCACTC 59 50482135 50484157 ATCACTGCATACCTGAGGA 58 NA Rattus norvegicus 81 LOC500028 ENSRNOG00000013438 ENSRNOT00000017955 1 1 1 80 17 49610677 49612134 ACGAGTCCAAGAAGGTTACAG 60 49612173 49612194 TTATAGCCTTGATTGAAGCCCT 60 NA Rattus norvegicus 81 Pithd1 ENSRNOG00000010873 ENSRNOT00000014458 2 1 1 83 5 154325202 154331791 GATGAGACTGTACAAGAACATTCC 60 154325142 154325162 TCTCGGTTCAGACTAAAGGTC 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 1 2 2 82 20 5804099 5804117 AACATGACACCATCCTGGG 60 5803656 5804053 CCCATAGAGGGTCTTTGGG 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 2 2 2 83 20 5804100 5804118 CAACATGACACCATCCTGG 59 5803656 5804053 CCCATAGAGGGTCTTTGGG 59 NA Rattus norvegicus 81 Hook1 ENSRNOG00000026226 ENSRNOT00000012396 2 1 1 80 5 114989760 114991258 GAAACTGAGCAAAGGTTGAG 57 114991299 114991319 TTCTTGTAACGACTTCTGGAG 58 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 1 2 2 80 17 29646262 29646282 TTGTCTGTGTACAATCACAGG 58 29646322 29647502 TCATCAAAGTAGTGACACAGC 58 NA Rattus norvegicus 81 Aqp3 ENSRNOG00000009797 ENSRNOT00000013803 1 1 1 80 5 57425558 57425898 GGCTCTACTATGATGCAATCTG 59 57425499 57425517 CAAAGATACCAGCTGTGCC 59 NA Rattus norvegicus 81 Zfp260 ENSRNOG00000020762 ENSRNOT00000049877 2 1 1 61 1 88457639 88461514 AAGAACATCGATCTGCGGA 59 88461537 88461557 TTCATCCTGTGTCCTTATCTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100362038 ENSRNOG00000007419 ENSRNOT00000059780 1 1 1 80 10 20598626 20598644 TCAACCTTACAAACGGTGC 59 20598688 20600119 GAGGTTTCCAATTGTGCGA 59 NA Rattus norvegicus 81 Gimap1 ENSRNOG00000042229 ENSRNOT00000059157 2 1 1 85 4 78371453 78373275 TTCAGCAAGAAAGGGATGAG 58 78373322 78373341 CTCTCACCATCTTTCTTCCC 58 NA InUTR Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157,ENSRNOT00000091532 1 2 2 80 9 14568991 14569286 ATGGTCATGATGGTACCAGG 59 14569329 14569347 TTCTTCCAGCATCTCTGCC 60 NA Rattus norvegicus 81 Tescl ENSRNOG00000019427 ENSRNOT00000026268 1 1 1 60 1 81193066 81193085 TTCGAGGACTTCTTCAAGAC 57 81193025 81193043 AGCTGACTTGCATCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pof1b ENSRNOG00000004795 ENSRNOT00000006415 1 1 1 80 X 84110832 84119847 CGTTATATTCTGCAGATGAGGG 59 84110773 84110791 TTCCTCCCGTATGTTGCTG 60 NA Rattus norvegicus 81 AABR07027457.1 ENSRNOG00000048067 ENSRNOT00000074220 3 1 1 81 17 31916120 31916517 TGGATTCCTGCTTCCAGAG 59 31916057 31916076 TAGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 Matn3 ENSRNOG00000056141 ENSRNOT00000084212 3 1 1 80 6 34079551 34079571 GTATACCTTGAACGCTGATGG 59 34082514 34082535 CAGATCTGTTCACATCCTCG 58 NA Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000025451 2 1 2 165 10 14853756 14853774 TGCCTAACTGCGAAGTACC 60 14848902 14848920 ATGGTTACCACTGGAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gtf3c1 ENSRNOG00000016218 ENSRNOT00000022271 2 1 1 80 1 197053407 197053427 GACTCTAGCTTCTATGCACAC 58 197053051 197053365 GGTGTTGTTCTTTCTGGCT 58 NA Rattus norvegicus 81 Tgs1 ENSRNOG00000008156 ENSRNOT00000010783 3 1 1 80 5 16413543 16413563 ATGCTGCTCTTCATTGAAGAC 59 16413603 16417302 TTTCCGATCCTCTACAAATGC 59 NA Rattus norvegicus 81 Rn60_5_0814.19 ENSRNOG00000051122 ENSRNOT00000075877 1 1 1 80 5 77742334 77743075 CCTCAATAGGAAATCATGATCCC 59 77742276 77742295 CCTTTCCTGAAGAACATCGC 59 NA Rattus norvegicus 81 Entpd6 ENSRNOG00000007427 ENSRNOT00000009946 2 1 1 80 3 146551004 146551022 GATCATGTTTGATGCCGGG 59 146551066 146553207 AAGGTGGGAGTTTCTCCAG 59 NA Rattus norvegicus 81 Olr1521 ENSRNOG00000030521 ENSRNOT00000040681 2 1 1 60 10 75187410 75187430 CCTGTTTCTGGTGTTCTTGTG 60 75187370 75187389 TATGATGAGGAGGTTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282,ENSRNOT00000066823 1 2 2 80 1 224936293 224936314 GGGACCAAGATATACAGTTCCT 59 224936352 224937346 GATCATAGATTCTGACCTGGTG 58 NA Rattus norvegicus 81 Shmt2 ENSRNOG00000008106 ENSRNOT00000011082 2 1 1 80 7 70828340 70828358 GAGATATGGGAGCTTCTGC 58 70827782 70828296 GCTGCAGAAGTTCTCTGAG 58 NA Rattus norvegicus 81 Olr1275 ENSRNOG00000047973 ENSRNOT00000073449 3 1 1 60 8 42979110 42979130 TGTACTTCTTCCTCAGCAGTC 60 42979070 42979093 GGAGTAATAACAGTAGATTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35b3 ENSRNOG00000016174 ENSRNOT00000021669 3 1 1 80 17 26494811 26497730 AATCTGACAGGTGTGATGC 58 26497771 26497792 TTTCATAGCTTTCTCCTGAACG 59 NA Rattus norvegicus 81 Nolc1 ENSRNOG00000018704 ENSRNOT00000025791 2 1 1 80 1 265836518 265836536 CCAGTCTCCAAAGAAAGCG 59 265836578 265836755 GAACTTGAATCAGACTCCTCG 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 3 2 2 87 20 19352583 19357846 TGACTATGTTAGAGATCACTATGGG 60 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 2 2 2 80 9 78919507 78920734 TGTCAGTCCAGATCAAACAG 58 78919446 78919466 TTCTGAGCATAGACACTAACC 57 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 3 2 2 80 9 78944022 78944828 CCTCAGTACCTTGATCTTCCA 59 78943962 78943982 GTTGACGATGTACTTTCTGCC 60 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000007807 1 1 2 84 4 82126451 82126469 TCAGAGACGTCTTCTCCAG 58 82125899 82126405 CATACTCTCCAACTTTCCCTG 58 NA Rattus norvegicus 81 RGD1306072 ENSRNOG00000025796 ENSRNOT00000030658 2 1 1 83 19 25283134 25283386 TCTCCAGTCTCAATCGACTG 59 25283432 25283450 GGTAAGGCAGAGACTTGGT 59 NA Rattus norvegicus 81 Poll ENSRNOG00000016748 ENSRNOT00000023137 2 1 1 80 1 265296871 265296889 CTGAGCTTGTGTCTACAGG 58 265296620 265296829 TTCATTCAAGGACCTCTTAGG 57 NA Rattus norvegicus 81 Acot5 ENSRNOG00000032508 ENSRNOT00000013760 1 1 1 63 6 107555754 107555775 GGAGTACTTTGAAGAAGCTGTG 59 107555799 107556976 AATTCCTGGACCCTTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1470 ENSRNOG00000055982 ENSRNOT00000090151 2 1 1 60 10 60220044 60220063 ATTTATCCTTTGCCGACCTC 58 60220085 60220104 ATGTTCTGCAACAACTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1313 ENSRNOG00000031942 ENSRNOT00000043988 1 1 1 60 8 43409102 43409121 CCTAACTTCCCTCACTTTCC 58 43409141 43409162 GAAATAATAGCCCACTTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684545 ENSRNOG00000049759 ENSRNOT00000073464 3 1 1 80 1 73118908 73120821 ATGAAGCAAGTCGAAGAAGC 59 73118847 73118870 GGAGAAACTGTTGAGATTACTTGG 60 NA Rattus norvegicus 81 Slc51b ENSRNOG00000028889 ENSRNOT00000042353 1 1 1 84 8 70931522 70931540 ATTCCATCCTGGTTCTGGC 60 70930537 70931476 TTTCGATTTCTGTTTGCCAGG 60 NA Rattus norvegicus 81 Slc51b ENSRNOG00000028889 ENSRNOT00000042353 2 1 1 85 8 70931522 70931541 TATTCCATCCTGGTTCTGGC 60 70930537 70931476 TTTCGATTTCTGTTTGCCAGG 60 NA Rattus norvegicus 81 Tmed3 ENSRNOG00000013889 ENSRNOT00000018603 3 1 1 80 8 97075957 97081087 TCACTCAGATGGAGTCTGC 59 97075895 97075914 GCAGTCGATAATGTGTCTGG 59 NA Rattus norvegicus 81 Gpr174 ENSRNOG00000032970 ENSRNOT00000046164 2 1 1 70 X 78372310 78372328 GAGCTTCTATCAGCACTGG 58 78395312 78395333 ACATTGAAGAAGAGCATGAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bet1l ENSRNOG00000013165 ENSRNOT00000017684 3 1 1 85 1 213604201 213604443 TTAAATCGCTGGCTTTGGA 58 213603993 213604013 CACACTTGTGAAATCTGAGTC 57 NA Rattus norvegicus 81 AABR07035107.1 ENSRNOG00000000891 ENSRNOT00000035992 2 1 1 80 12 4737875 4737893 TGGATCCTTCCCAGAAAGG 59 4737933 4738277 CCAAACTGTAACCTATAGCAGTG 59 NA Rattus norvegicus 81 RGD1565682 ENSRNOG00000025444 ENSRNOT00000035013 3 1 1 81 1 252104215 252104233 GAAGTGGTGAGTTTCAGGC 59 252103531 252104171 TATAACGGAGGAGTGGTCTG 58 NA Rattus norvegicus 81 Bcat2 ENSRNOG00000020956 ENSRNOT00000028474 1 1 1 80 1 101570904 101570999 CTATATGAAGGCAAGCAACTCC 59 101571039 101571058 CTTCAACTCCTTCTGGAAGC 59 NA Rattus norvegicus 81 Gspt2 ENSRNOG00000048817 ENSRNOT00000076205 1 1 1 80 X 63959427 63961124 GGAGCCTCAAGAGAAATTTCAC 60 63959368 63959386 CAGGAGTGACACGACTGAG 60 NA Rattus norvegicus 81 LOC100911889 ENSRNOG00000046734 ENSRNOT00000072934 2 1 1 80 4 82373108 82373127 AGAACTACGTTTCAAGACCG 58 82373170 82373758 GAAACCACACCTTGATGGT 58 NA Rattus norvegicus 81 Pcdh20 ENSRNOG00000013306 ENSRNOT00000017765 2 1 1 60 15 71778823 71778841 CATCTACATCGTCCCAGCA 59 71777703 71778799 AAAGCAGAACAACATGCGG 60 NA DesignRelaxed Rattus norvegicus 81 Atp5h ENSRNOG00000003626 ENSRNOT00000004836 2 1 1 80 10 103968765 103968783 TGCTCTGAAGATCCCTGTG 59 103967724 103968722 GCACAGTTCTTCACATCCTC 59 NA Rattus norvegicus 81 Gal3st1 ENSRNOG00000042041 ENSRNOT00000066362 2 1 2 102 14 84233117 84244977 AATCATCAGTGGTTTCCTGAG 58 84245038 84245059 GCAATAGGAAACTGGTTAAGAG 57 NA Rattus norvegicus 81 Olr1318 ENSRNOG00000060661 ENSRNOT00000088053 1 1 1 60 8 43590948 43590966 GATTCAAAGCCTTCAGCAC 57 43590987 43591008 GAACCAAAGAAGACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1318 ENSRNOG00000060661 ENSRNOT00000088053 3 1 1 60 8 43590648 43590667 TCACCATGTCTTTCCAAGTC 58 43590689 43590708 ACGATGCCTATACCATACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629,ENSRNOT00000081715 2 2 2 80 20 8303383 8304358 TACTTCATCGAGGCTGTCAC 60 8304401 8304419 CACTTTCCGCTTCATCCAC 59 NA Rattus norvegicus 81 Enpep ENSRNOG00000051854 ENSRNOT00000087062 1 1 1 80 2 233732592 233732615 CTTACAACATATCCCTCATTCACC 59 233730695 233732556 TATCCAGTGTCTCTTCCTTCTC 59 NA Rattus norvegicus 81 Tradd ENSRNOG00000015179 ENSRNOT00000020405 1 1 1 150 19 37215174 37215336 TCAGCTCATAGTGAACCGG 59 37215042 37215060 ATACTCATAGGCCAGCGAG 59 NA Rattus norvegicus 81 Slpi ENSRNOG00000046699 ENSRNOT00000076191 1 1 1 80 3 160801449 160801467 CAGGAAAGCAGAGATGCTG 59 160800913 160801405 TCTTCTTCACTGGTCCACG 59 NA Rattus norvegicus 81 Adck1 ENSRNOG00000012685 ENSRNOT00000016962 1 1 1 80 6 111718865 111724411 CTTTGACTTCCTAAAGGTCCC 58 111724453 111724471 CCTCCCTCCACAAATTCCA 59 NA Rattus norvegicus 81 Hibadh ENSRNOG00000008063 ENSRNOT00000011069 1 1 1 80 4 82607259 82607277 GGGTTATGGATGGAGTTCC 57 82605228 82607215 CTAATCCCAGATCCTTGGC 57 NA Rattus norvegicus 81 Rabl6 ENSRNOG00000016795 ENSRNOT00000065410 2 1 1 80 3 2808600 2808623 GAAGAATGACTCAGATCTCTTTGG 59 2807879 2808564 TTGCTGTCTTTATCTTCCTCAC 59 NA Rattus norvegicus 81 Ap2a1 ENSRNOG00000026243 ENSRNOT00000020304 2 1 1 80 1 100913823 100913842 ATTGACTTTGGACACATGGA 58 100913604 100913782 GATGAACAGGTACCCTATCTG 57 NA Rattus norvegicus 81 Sidt1 ENSRNOG00000002013 ENSRNOT00000002759 1 1 1 80 11 61412468 61412487 TGCTGGGTTTCTTTGATGAC 59 61412529 61414399 TCAACAACACCAGGAATGAG 58 NA Rattus norvegicus 81 Mrpl34 ENSRNOG00000017552 ENSRNOT00000023579 1 1 1 106 16 19874115 19874297 GAGTGGCAGGTATCTCCAG 59 19874367 19874385 TCGGCTGATACTCGTTTCC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881,ENSRNOT00000022281 3 2 2 80 9 89076195 89082200 TGATGTTTCACAGTGCCCT 60 89076133 89076153 CAGTTGGTACTGTTTGGTCTG 59 NA Rattus norvegicus 81 Ica1l ENSRNOG00000017258 ENSRNOT00000041546 1 1 1 80 9 66806718 66808436 GCTCTCAAGCAACTACAAGAC 59 66806658 66806677 ACTAAGACAACTGCCCTCTG 60 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502,ENSRNOT00000043433,ENSRNOT00000079044 3 3 3 81 1 197553101 197553119 GAAACTGTCTGGGACAAGC 59 197549850 197553059 TCAGTAAATCACCACTTTCTCC 58 NA Rattus norvegicus 81 Lrrc26 ENSRNOG00000011457 ENSRNOT00000015242 1 1 1 80 3 2507225 2507320 CCCACTTCAGAAACTGAGAC 58 2507363 2507381 GTTGTCCGGAAAGTCTGTC 59 NA Rattus norvegicus 81 Rnf144a ENSRNOG00000007370 ENSRNOT00000009877 1 1 1 80 6 45537339 45537357 GAAACTGCAATTAGCTGCC 58 45537113 45537297 TGCAACCATACACTCAATCTC 59 NA Rattus norvegicus 81 Fam131c ENSRNOG00000023008 ENSRNOT00000037202 1 1 1 80 5 159929785 159930304 CTTCCAGCTCCAAGACCTC 60 159930347 159930366 GCTAGGAGACTGTCATCCTG 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 3 2 3 80 14 22725128 22726258 TTACAGTGATGTTCTAGGTAGACC 60 22726297 22726315 CAGAAGGTTCGAATGAGCC 59 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891,ENSRNOT00000020003 1 2 2 80 19 37204782 37206226 GTTGTCTTGCACAGATCCTC 59 37206269 37206287 GATCATCCGCTGAAGACCA 60 NA Rattus norvegicus 81 Nmur1 ENSRNOG00000018521 ENSRNOT00000025024 2 1 1 80 9 93403686 93404039 CCAAGATGCTAATTGCTCTG 57 93403625 93403643 CCATACTCCACATGAGACG 57 NA Rattus norvegicus 81 Olr257 ENSRNOG00000051603 ENSRNOT00000090373 3 1 1 60 1 172551286 172551304 AAGTCCACCTTCTCCACTG 59 172551244 172551265 GGATTACCACCATGTAGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr27 ENSRNOG00000010880 ENSRNOT00000014455 1 1 1 62 4 132138650 132138668 GATGTTCTACGCCATCACG 59 132138693 132138712 TAACTGGCAACCACATAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fibp ENSRNOG00000020567 ENSRNOT00000027927 2 1 1 80 1 220840882 220840903 TACCAAGAAAGACCTTGATGAC 58 220840943 220841857 TTGAAGTTGTCAAACTGCCT 58 NA Rattus norvegicus 81 Birc5 ENSRNOG00000050819 ENSRNOT00000072387 1 1 1 81 10 106856695 106860790 AACCCTATAGAGGAGCATAGGA 60 106860832 106860850 TGACGGTCAGTTCTTCCAC 60 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 2 2 2 81 9 49872109 49872129 TGGAAGAGGCTTTAGTCTTGG 60 49867744 49872070 AGAATCCTCCTGTACATTACCTG 60 NA Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 3 2 2 80 1 84367075 84369905 TGACTATGGCCACTTCTGAG 59 84369948 84369966 TCACAGCATAATTGACGGC 59 NA Rattus norvegicus 81 Fam98a ENSRNOG00000030328 ENSRNOT00000052131 2 1 1 80 6 21063719 21064009 GGTCTGACAGAGCTAAGAGTC 60 21064049 21064069 TACCTTTGGGAGACAAGACTG 60 NA Rattus norvegicus 81 LOC680161 ENSRNOG00000028826 ENSRNOT00000047694 3 1 1 60 4 147121360 147121381 ATGACAGATATGACAAGATCCG 58 147121321 147121339 ACAGACTTAGGACCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.1 ENSRNOG00000051274 ENSRNOT00000076406 3 1 1 60 X 62926161 62926179 TGCAAGGAGATCTGCTCTG 60 62926119 62926138 TGCCAAAGTGACAGTAACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 3 2 2 80 5 169395408 169400256 AACATCCTCACAGGTACCA 58 169400297 169400318 CTTGTCCACATTCTTCAATGAC 58 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645,ENSRNOT00000088070 2 2 2 80 4 136889458 136891533 TGGGCTATGAGGTCTTATACTG 59 136891572 136891592 TTGTGACATTTCCACTGACTC 59 NA Rattus norvegicus 81 Chrne ENSRNOG00000003777 ENSRNOT00000005050 3 1 1 80 10 57241078 57241097 CAGACTGTCTTCTTGTTCCT 57 57239841 57241035 AATAAGATACCTGCCCAGC 57 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152,ENSRNOT00000003255 2 2 2 80 11 66777522 66777542 ACTGCTCTAAAGGATCAGCTC 60 66776577 66777480 GTCATGTTCAAGCCTGGAC 59 NA Rattus norvegicus 81 Rn60_6_0926.2 ENSRNOG00000051280 ENSRNOT00000072892 3 1 1 60 6 82908697 82908716 CCACCAGTCGAATTTACCAG 59 82908738 82908757 GAGTTGTGGTCTAGTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0655.1 ENSRNOG00000051282 ENSRNOT00000076575 2 1 1 60 X 64528910 64528930 CAGTGAATTGACAACTACCCT 58 64528870 64528888 AGAGGAGGGTGATTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pofut1 ENSRNOG00000010104 ENSRNOT00000013730 2 1 1 80 3 148730020 148730041 ATAAGTCAGAGTTGTTCACAGG 58 148730081 148739256 GCTCCTTTGGAGGAAATCTC 58 NA Rattus norvegicus 81 Apaf1 ENSRNOG00000008022 ENSRNOT00000010869 1 1 1 80 7 31725520 31728200 AAACAATAAGGGTCTGGGAG 57 31725459 31725480 GAAACACGACATCTATTTCCTG 58 NA Rattus norvegicus 81 RGD1563562 ENSRNOG00000042222 ENSRNOT00000058288 3 1 1 80 2 132300535 132301056 GTGGTACTTCTTTCTACAAAGATCC 60 132300479 132300497 TCGGTGAGTATCTGCATGG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020012 1 1 7 127 17 57074600 57082578 GATGAAACTGCTGCCACAG 60 57082669 57082687 TCTTCTGCTAGTTGCTGGG 59 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864 2 1 2 83 5 90349007 90349025 TCTAGGTTCCTTGTGGTGG 59 90349072 90352000 AGAGACTGGAACTGACTCC 58 NA Rattus norvegicus 81 Steap2 ENSRNOG00000006076 ENSRNOT00000007977 1 1 1 80 4 25521763 25521781 CTACAGCCTCTGCTTACCA 59 25521824 25523184 ATATTCGCATGAACCTGCTG 59 NA Rattus norvegicus 81 LOC683549 ENSRNOG00000022136 ENSRNOT00000033595 1 1 1 80 11 60152317 60152335 CGTGCTCAAGATTCCAGAG 58 60152378 60159041 CTATACATGTCCGTGAGCCT 59 NA Rattus norvegicus 81 Adgre1 ENSRNOG00000046254 ENSRNOT00000073926 2 1 1 80 9 9439041 9442926 ATCATCACGATCAACTCTGC 58 9438980 9438999 GACTTCTGAGTTGACACTGC 59 NA Rattus norvegicus 81 LOC100910611 ENSRNOG00000049059 ENSRNOT00000072914 3 1 1 82 1 82934193 82935518 CTGCTCAGATATGCTGACC 58 82935563 82935582 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Aqp2 ENSRNOG00000054378 ENSRNOT00000091717 1 1 1 80 7 141241355 141241373 GTTGCTCCATGAATCCAGC 59 141241417 141242143 CGATCCAGAAGACCCAGTG 60 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000072149 2 1 2 86 1 80218449 80218912 CCCGAGAAGAAACACTTACC 58 80218382 80218400 TTCTGCATTTAGCTGCAGC 59 NA Rattus norvegicus 81 Olr413 ENSRNOG00000047478 ENSRNOT00000046877 2 1 1 60 3 20879436 20879460 TCTGTGGTATCTCTGTATTATGGTG 60 20879476 20879496 TGCTGGATGAAGGTATAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh8 ENSRNOG00000013101 ENSRNOT00000017599 2 1 1 60 15 62197829 62197847 ATCAACCACATGCAGAGTG 58 62197395 62197413 AATGGCCTAGGATCTTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Fign ENSRNOG00000004679 ENSRNOT00000006175 2 1 1 109 3 49995426 50119289 GTGTTTATGGCTTGAAGATGC 58 49995337 49995356 ATAGGCTTCAACTTTGTGGG 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240,ENSRNOT00000050535 2 3 3 128 11 71117904 71117924 GATTAACTCGTACTGCTGTGC 60 71116664 71117814 TCAACGTCATCCCTGTCTG 59 NA Rattus norvegicus 81 Atox1 ENSRNOG00000013118 ENSRNOT00000017588 1 1 1 80 10 40798825 40798844 TTCTCTGTGGACATGACCTG 60 40794223 40798782 GTTGAACTCCACTCCTCCC 60 NA Rattus norvegicus 81 LOC102555578 ENSRNOG00000050230 ENSRNOT00000042110 2 1 1 80 3 145882877 145882897 TGGATCCTTCTCAGAAGAGTC 59 145882939 145883157 CCCAAACGTAGCCTATAGC 58 NA Rattus norvegicus 81 Raet1c ENSRNOG00000040300 ENSRNOT00000062027 1 1 1 80 1 1103544 1103562 CCAGATATCACCCAGCCTC 59 1103481 1103502 GATGATGGATGATGAGTCCAC 58 NA Rattus norvegicus 81 AABR07000137.1 ENSRNOG00000050129 ENSRNOT00000075346 1 1 1 80 1 1391099 1392247 TGCTAGATGGTACAGACTCTC 59 1391039 1391057 TTCCATTCACTGAGCACTG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084724 2 1 11 60 6 99033054 99033074 ATCAAAGCCATCCTGTTATCC 58 99033095 99033114 GCTTGAGATGTTCTTCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr309 ENSRNOG00000047518 ENSRNOT00000073278 3 1 1 60 1 213335557 213335577 TAGCAGATGCCATTTATGGAG 58 213335598 213335617 ATGCAGCCATAGGATAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ascc2 ENSRNOG00000007349 ENSRNOT00000065188 2 1 1 80 14 84882841 84882860 AACTTCGTAGCCAATGACCT 60 84882901 84883284 GCTCTCATCAAAGATGACCTG 59 NA Rattus norvegicus 81 Ascc2 ENSRNOG00000007349 ENSRNOT00000065188 3 1 1 80 14 84903330 84903350 CGGGTTATCAACAACATCCTG 59 84903387 84904344 CTTTACTTGTCTTTCTAGGCTTCG 60 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000047303,ENSRNOT00000078816 1 3 3 80 8 48999574 49003767 CCTACTATGTGGACAAACACG 59 48999514 48999534 GGTGGTCATAGTACACTTCCT 59 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 3 2 2 82 5 48579176 48579276 TGTAAAGGACATGGTGAGTG 58 48579319 48579339 GGGCTTCTTTCATTAAACCTC 57 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 1 3 3 80 20 20588827 20588935 GGATCTTCAGAGCTCTGGG 59 20588976 20588997 GGAAAGTGTTCTTGTAGTCCTG 59 NA Rattus norvegicus 81 Deaf1 ENSRNOG00000017960 ENSRNOT00000048817 2 1 1 80 1 214312394 214313250 TATCAGGACATGTCCTGTCTG 59 214312334 214312357 CAACTATTAGTGTGGCTTTCTCAG 60 NA Rattus norvegicus 81 Mipol1 ENSRNOG00000009151 ENSRNOT00000012282 2 1 1 80 6 78475361 78475380 GCTCCTCAATCTTTCTGGTG 59 78475421 78499349 CCAACCTTTCTAACATCAGCC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075993,ENSRNOT00000075879 2 4 6 110 15 36972746 36972764 GGAACTATACCTGGCCCAC 60 36970624 36972672 CCTATCATTGTGCACTGCG 59 NA Rattus norvegicus 81 Muc20 ENSRNOG00000001776 ENSRNOT00000002418 3 1 1 93 11 71227330 71227348 TTAACCAAGACCACAGCCT 59 71227402 71232623 CATTTATACCTGGATCGTGCTC 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076372 1 1 5 122 2 30665211 30666571 AGATGTCAGGTACACCAGG 58 30667388 30667407 CCATGATATCCGGTGATCAG 58 NA InUTR Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 2 4 5 87 2 30666640 30667390 ATCTAGCTCGGGAAGTCTG 58 30667441 30667459 ATCATCTGTGCGTCTTTCG 58 NA InUTR Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 2 2 2 80 13 90451832 90452418 CAAAGAACTTGAGTTCATCACG 58 90451773 90451794 GCGTTGATACAATAAGTGACGA 59 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 1 2 2 80 1 259079870 259079889 AGATCCTTCTGTCTCAGAGC 59 259079726 259079830 CTAAGACTGGAATTGCCATCTC 59 NA Rattus norvegicus 81 Tas2r145 ENSRNOG00000037036 ENSRNOT00000055734 2 1 1 60 4 167017877 167017898 GACTGGTAAACTACTCTGACTG 58 167017917 167017937 AGGATGAAGTTGATGAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Narfl ENSRNOG00000019522 ENSRNOT00000026518 3 1 1 80 10 15150683 15150702 GAAGTCTTCAGACTGCTGGA 60 15150745 15151021 ACTCCTGGTTAAGCCATCC 59 NA Rattus norvegicus 81 Asb12 ENSRNOG00000004197 ENSRNOT00000086265 3 1 1 134 X 64714609 64715033 CTACAAGCCCGAGCTACTC 60 64714493 64714515 CTTGAGGTAGCTAATCAACACAG 59 NA Rattus norvegicus 81 Tex21 ENSRNOG00000038496 ENSRNOT00000088808 1 1 1 80 6 99257870 99257891 GAATCTCAGAGTTTCGGAAGAC 59 99254401 99257829 CAGGTGCTCCCTTAGACAG 60 NA Rattus norvegicus 81 Prpf6 ENSRNOG00000051498 ENSRNOT00000083423 1 1 1 80 3 177124069 177124090 GTTCCTGATAGTTTCTTTGCCA 59 177124130 177124343 TCCAAATTGAGTTTGTCGGG 59 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560,ENSRNOT00000027849 1 2 2 80 1 101054046 101054065 CCTGCTCTTAGTCTACATGG 57 101053663 101054004 AAGATGTCAAGAACTTGGCT 58 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000048976,ENSRNOT00000065051 3 2 2 80 1 72644962 72644982 TGACATTCTGTTGATTGCTCG 59 72645022 72645123 AGGTCTAATGGGATCATCCTG 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000088509,ENSRNOT00000065300 1 2 2 80 3 8944501 8944520 GAACAACCAGGTGTTCTTCG 60 8944563 8947177 CCCTTGGGACTCTTCTCAG 59 NA Rattus norvegicus 81 LOC679894 ENSRNOG00000042340 ENSRNOT00000061664 1 1 1 60 14 6585388 6585411 CATTCCCTTATCAGCATAGATACC 59 6585351 6585374 CTGTTGTAAGTCTCATTCTTCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914 1 3 6 88 14 44525549 44525567 TAACAGGAAGGAACTGGCC 59 44525619 44526411 TCTTGTAACGGAAGCCCAG 60 NA Rattus norvegicus 81 Dcaf15 ENSRNOG00000006551 ENSRNOT00000008786 1 1 1 80 19 25214182 25214202 CTGGCTACATCAATTACACCA 58 25214036 25214142 CATCCTCAAACTCATCCTCAG 58 NA Rattus norvegicus 81 Map2k1 ENSRNOG00000010176 ENSRNOT00000013933 1 1 1 95 8 69164610 69164629 GAGAAGATCAGTGAACTGGG 58 69162819 69164553 GTGAATTAGCTTCCTAGCCA 57 NA Rattus norvegicus 81 Zfp786 ENSRNOG00000006925 ENSRNOT00000038550 2 1 1 80 4 77499580 77502749 AGTTACCCGAGAGTAGCCA 60 77499518 77499537 TCTCCAGAGGATGTATGGGA 59 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000027502 2 1 2 80 1 225826302 225826321 GTGAAGCAATTCAAGCAGTG 58 225825558 225826262 TAAATATTGCCTCCGTCATCAC 59 NA InUTR Rattus norvegicus 81 Dpcd ENSRNOG00000017241 ENSRNOT00000023278 3 1 1 80 1 265304007 265311932 GTGAACTCCTTGTGAGAAAGTG 60 265311973 265311991 TTGGTTCTCCCACTTCGAG 59 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000009979 1 1 2 80 7 142875914 142875932 CTGGAAACCCTGTATGGGA 59 142875973 142876188 CTCATACAGGGTTTGCTTAAGG 59 NA Rattus norvegicus 81 Nudcd2 ENSRNOG00000060914 ENSRNOT00000086814 1 1 1 80 10 25893314 25895546 CCAGAAAGAGAATCCTGGGT 59 25895587 25895607 TTTGAGAAATCTGGTCCACCT 59 NA Rattus norvegicus 81 RGD1561282 ENSRNOG00000043071 ENSRNOT00000066837 2 1 1 117 3 177164471 177165901 TGAGAGGCCTATGGTACCT 59 177165982 177166000 GAGTACCTCCTGGACACTG 59 NA InUTR Rattus norvegicus 81 Tas2r125 ENSRNOG00000021397 ENSRNOT00000029713 1 1 1 60 4 167068362 167068380 TGATACCTGGAGTGATGGA 57 167068320 167068340 GCAATTCTTTGATCTGAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 1 2 2 80 17 54022254 54022273 CCAAAGGAGACAAAGCAGAG 59 54022315 54023733 CTGGAAGAATCTGACACCTG 58 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000039335 1 1 2 80 10 43647782 43652381 AGTCTACATCCAGGGTTGC 59 43652422 43652443 AGCATGCAAACTGTTTATCCTC 60 NA Rattus norvegicus 81 Rbm41 ENSRNOG00000057622 ENSRNOT00000086785 1 1 1 80 X 111275889 111285991 ACCAAACAAGGTGCTATATCTG 59 111275830 111275850 TGGAATCGAGCGAATAATGAG 58 NA Rattus norvegicus 81 Fopnl ENSRNOG00000053230 ENSRNOT00000083714 2 1 1 80 10 734070 735318 CTGTCCTCATAGCAGAATCTG 58 735357 735378 CTTCAAAGGCATTTAGTTCACG 59 NA Rattus norvegicus 81 LOC100911204 ENSRNOG00000026378 ENSRNOT00000041727 3 1 1 87 3 112539157 112540208 GAAGAGAATGACAATACACAGAGG 59 112541444 112541464 ATTTGAGGTCCTGAAGAGGAC 60 NA Rattus norvegicus 81 Dhps ENSRNOG00000004219 ENSRNOT00000005656 1 1 1 80 19 26185442 26185460 GGGCTATACGTCCAACCTC 60 26185501 26186201 AGTACATCCACCATATTGTGCT 60 NA Rattus norvegicus 81 Dhps ENSRNOG00000004219 ENSRNOT00000005656 2 1 1 80 19 26186590 26186608 TTCCAAGATGATCTCCCGG 59 26186651 26187151 GGTATGTGGTTCTTATGGGC 59 NA Rattus norvegicus 81 Gpr85 ENSRNOG00000024636 ENSRNOT00000039005 1 1 1 184 4 40384294 40385268 GCATATTCCAGATATTCTGATGGC 60 40384133 40384155 CCATAGATGGATGGAGGATAAGG 60 NA InUTR Rattus norvegicus 81 Ltc4s ENSRNOG00000003244 ENSRNOT00000004359 3 1 1 81 10 35738504 35738523 GAAGAACTTTCCACGTGTCG 60 35738366 35738460 CTGCAATTTACCTGGGCTC 59 NA Rattus norvegicus 81 LOC681198 ENSRNOG00000040020 ENSRNOT00000061522 3 1 1 91 15 5667222 5667240 TCCACAAGATGCAGAAGGA 59 5539923 5667169 AGACTCAAAGTTGTTCCTGTC 58 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 2 1 4 129 5 78373879 78378415 TAGCAGTCTGCGGAAAGAG 60 78373768 78373786 TGAAAGTAGCCACTGTGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr760 ENSRNOG00000027004 ENSRNOT00000030909 2 1 1 60 3 102671651 102671670 ACCTGCTTTATTCTGTTGCT 58 102671610 102671632 AGCTCTGACATACAGTGATAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rlbp1 ENSRNOG00000016897 ENSRNOT00000022962 2 1 1 80 1 141099029 141099047 AACCATGGTACTTCACCAC 57 141098789 141098985 CATGAACGAAGACCCTCTG 58 NA Rattus norvegicus 81 Tas2r116 ENSRNOG00000021366 ENSRNOT00000028970 2 1 1 60 4 167144896 167144918 GGTTAGTATTAGTGAGTTGGTGG 59 167144858 167144878 CCTTCAGTCATCCATTGTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912609 ENSRNOG00000047561 ENSRNOT00000073975 3 1 1 60 4 170812413 170812431 CGAGAAGCATCTGACTGAG 58 170812371 170812389 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ar ENSRNOG00000005639 ENSRNOT00000009129 1 1 1 80 X 67759589 67759607 TTGTCACTACGGAGCTCTC 59 67759646 67795605 CATAGATACTTCTGTTTCCCTTCC 59 NA Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617,ENSRNOT00000043661 3 2 2 83 3 9422204 9427786 GAAGACCCTGAAGGAGGAC 59 9422139 9422158 AGGTTAGGGTGCTTGATCTC 59 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000049611 ENSRNOT00000072284 1 1 1 60 4 1602421 1602441 TTATGTACCTAAAGCCCTCCT 58 1602462 1602481 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gkn3 ENSRNOG00000037782 ENSRNOT00000057350 1 1 1 85 4 119186547 119187940 GATACCTTATTGCACCTTCCA 58 119186306 119186327 CAGAAGATGACTGTCACTAGTG 58 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830,ENSRNOT00000060810 2 2 2 80 6 27994871 27998987 TCTTCATAGAAATGCGTGCTC 59 27999028 27999047 GCACAAATCGTAACTTGCAC 59 NA Rattus norvegicus 81 Prps1 ENSRNOG00000060262 ENSRNOT00000078582 2 1 1 80 X 111809223 111811308 TAAGAAGGATAAGAGCCGGG 59 111811349 111811369 ATAATATGATCCGCACCTGCT 60 NA Rattus norvegicus 81 Gstt4 ENSRNOG00000038300 ENSRNOT00000058314 3 1 1 82 20 13783634 13783654 GACAAGTTGTTCATCACTGGG 60 13783698 13784530 TTAGTTCCCATTGGCTGCA 60 NA Rattus norvegicus 81 Fam20c ENSRNOG00000001314 ENSRNOT00000001783 1 1 1 81 12 17931696 17960495 CTATTCAAACCCATGAAGCAG 57 17931635 17931653 CATTGTGCCTCTCGTAGTC 58 NA Rattus norvegicus 81 Appl1 ENSRNOG00000013574 ENSRNOT00000018413 2 1 1 80 16 2579996 2580015 TGCTCTAGAAGCTGTCACTC 59 2579070 2579953 GGTGGTCGAGATTGTCCTC 60 NA Rattus norvegicus 81 Olr768 ENSRNOG00000047849 ENSRNOT00000050334 3 1 1 60 3 102801914 102801934 CATGAACCTGAAGAGATGCAC 59 102801874 102801895 ATGAGTAAAGCCAATTGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910,ENSRNOT00000081951,ENSRNOT00000066474 1 3 3 80 10 75094269 75094287 TGAATCCTCGCTGGAATGG 60 75094329 75095253 GGTATGTGATGATCTGGACCA 59 NA Rattus norvegicus 81 Pla2g4f ENSRNOG00000008135 ENSRNOT00000010959 2 1 1 80 3 112083067 112083086 AAACCCACCCATACTACGAC 60 112082240 112083027 CAGCTTTGGACAATTTATCCGT 60 NA Rattus norvegicus 81 Zfp655 ENSRNOG00000060129 ENSRNOT00000084637 3 1 1 84 12 11142979 11142998 CCAGTCTGAATGTCTTTCCC 58 11132220 11142935 GGAAATTGGAAATCCATCAGTG 58 NA Rattus norvegicus 81 LOC102549803 ENSRNOG00000045933 ENSRNOT00000075813 2 1 1 60 4 117574975 117574993 CCTAGTGTCTGGCTCTTGG 60 117574933 117574951 CAGGCAAAGGAGAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap32 ENSRNOG00000008709 ENSRNOT00000011589 1 1 1 80 8 33317695 33335345 AAGCATGGATTTCAGGTGG 58 33335389 33335407 GTTGGTCACTGACTGAGGA 59 NA Rattus norvegicus 81 Slc13a1 ENSRNOG00000008121 ENSRNOT00000010788 1 1 1 80 4 51167517 51167617 GCTCTAGGAAGCAGTAATGAC 58 51152364 51152383 ATACTTTGCTCCTGTGACTG 58 NA Rattus norvegicus 81 Camkmt ENSRNOG00000030629 ENSRNOT00000048550 3 1 1 84 6 8669776 8671667 TTATTCAGGGACCTTGCTG 57 8672771 8672790 TGACATCTGCAGAAATAGCA 57 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043,ENSRNOT00000015840 1 2 2 80 5 169574714 169574824 GTTCCACAAGATAGGAGTAGGT 59 169574655 169574674 ATGCCACTGTCATACTTCCC 60 NA Rattus norvegicus 81 Snn ENSRNOG00000058739 ENSRNOT00000088279 2 1 1 60 10 4638498 4638516 CAGCCAGTCAGAGGATGAG 60 4638456 4638476 TAGAAAGGGCTCCTTTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plin3 ENSRNOG00000048834 ENSRNOT00000070978 3 1 1 80 9 10777396 10779443 CAGAACTAGCCCTGATTGC 58 10779486 10779505 AGTAGCTCCTTTCCTGTCTC 59 NA Rattus norvegicus 81 Msantd4 ENSRNOG00000022245 ENSRNOT00000034482 3 1 1 99 8 1510795 1510813 GAATGTGGCAGATTTCCGG 59 1510874 1511487 CTCCTCAATCTCAAATTCGGG 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000083955 1 1 4 80 7 140400779 140401204 CACATACACTACACGGGCA 60 140400717 140400739 AAGTTCTATGACCAGAGGATCTC 59 NA Rattus norvegicus 81 Dusp10 ENSRNOG00000004003 ENSRNOT00000005400 2 1 1 89 13 104315435 104315453 AACTACAAGAGGCTGCCAG 60 104315503 104320101 ATGAGCTTCCTCAATGAATTCG 59 NA Rattus norvegicus 81 Nkiras1 ENSRNOG00000008565 ENSRNOT00000011438 3 1 1 92 15 8183635 8183653 TGCAAGGTTGTCGTTTGTG 60 8182145 8183581 GTCTTCCATGCCAATAGTGTG 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243,ENSRNOT00000013400 2 3 3 80 3 57852940 57853268 CATCCACAGGATAGCATGG 58 57853312 57853330 GTCTCCAACAGGGAAAGAC 58 NA Rattus norvegicus 81 Wdr83 ENSRNOG00000004287 ENSRNOT00000005917 1 1 1 81 19 26189787 26189805 TCTGATATCCAGCCTGGAC 58 26189640 26189742 TTTATGGCCCACATACTCG 57 NA Rattus norvegicus 81 LOC100910478 ENSRNOG00000048310 ENSRNOT00000079606,ENSRNOT00000012636 3 2 2 96 3 112370317 112370962 ACAAACTGACTGTTCTACCTG 58 112370241 112370259 AAGGAAGACGGTAGCTCTC 59 NA Rattus norvegicus 81 Rn60_X_0634.1 ENSRNOG00000051033 ENSRNOT00000076203 2 1 1 60 X 62743057 62743077 GGAAAGTGTGCTCAAGTTACC 60 62743017 62743036 GCAAGACTGCATTTATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 1 2 2 90 8 111213744 111213762 TAATGGCTCAGGAGACTGC 59 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 AABR07008940.1 ENSRNOG00000011997 ENSRNOT00000015975 2 1 1 81 2 80270086 80270773 GAACATTTCAACCTGTTCAAGG 59 80270814 80270833 ATCAAATGACCCTGAACAGC 59 NA Rattus norvegicus 81 Mmp20 ENSRNOG00000021896 ENSRNOT00000033306 3 1 1 82 8 5858435 5859345 TCTTCTTCAAAGGTCCTCAC 57 5859387 5859408 GAACCCGAAGTCATAAATTGTG 58 NA Rattus norvegicus 81 Olr782 ENSRNOG00000047084 ENSRNOT00000074043 3 1 1 60 3 103171958 103171979 TTATCTAAAGCCCTTTCCACTC 58 103171919 103171938 GCCCAAAGAACAAGATGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055539.1 ENSRNOG00000058125 ENSRNOT00000034346 1 1 1 80 7 5573638 5573660 CCCTCATCATGAATCAGAAAGTC 59 5573578 5573598 TGAGCAATGGGATGGTCAG 60 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000059496,ENSRNOT00000081280 1 2 2 80 10 31292473 31308016 AAGCTCTGTCTCAAGAGGA 58 31292411 31292430 CTTTGATATAGACCCGAGGC 58 NA Rattus norvegicus 81 Raph1 ENSRNOG00000014722 ENSRNOT00000036194 2 1 1 80 9 67302814 67302834 AGTCAGCTTATGATTGGACCT 59 67298837 67302773 ACTGAGACTCTGGGATACTG 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616,ENSRNOT00000010910 2 2 2 80 13 113909309 113909327 TGTCTTTGAGAGGCCTCAG 59 113908962 113909267 CTCTCACTTATCTGGAACCCT 59 NA Rattus norvegicus 81 Slc25a33 ENSRNOG00000016949 ENSRNOT00000022799 1 1 1 80 5 166703496 166706980 GCAGCTAGAACGAAAGATGAG 59 166703436 166703455 ATGCCTTCTGTCTGGTACAC 60 NA Rattus norvegicus 81 Fam50a ENSRNOG00000045790 ENSRNOT00000073104 1 1 1 80 4 104949756 104949777 CCATGCACCTAATGAAGAAGAG 59 104949815 104951157 TTATGTTCTCCTCTGCAATCCT 59 NA Rattus norvegicus 81 Actr1a ENSRNOG00000019725 ENSRNOT00000026792 3 1 1 80 1 266127359 266127981 ATAAAGGAAAGAGCTTGCTACC 59 266127300 266127320 CAGGTAGTACTGAGCCTTCTC 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643,ENSRNOT00000022445 3 2 2 80 17 53680740 53680759 CCATTTCCAGAGGAAAGGGA 59 53678261 53680701 CCGTTTGTTAATAGGTGTACCTC 59 NA Rattus norvegicus 81 Bfar ENSRNOG00000003151 ENSRNOT00000004217 3 1 1 81 10 1487863 1491894 TCTCTGGGAATACAAGGCTG 59 1491938 1491956 CAAGCCAAGTCTTGGTGAG 59 NA Rattus norvegicus 81 Reg3a ENSRNOG00000006360 ENSRNOT00000008468 2 1 1 80 4 109478313 109479060 TCAGGTACGAGGTGAAGAC 59 109479104 109479122 GAACGATAAGCCTTGGAGC 59 NA Rattus norvegicus 81 Rbl1 ENSRNOG00000006921 ENSRNOT00000064824 2 1 1 80 3 153278877 153280733 CAAGCTAATAGTCACGTATACAGG 59 153278820 153278841 CTCATAGTCACCATTGTATGCC 59 NA Rattus norvegicus 81 Car6 ENSRNOG00000021355 ENSRNOT00000051309 3 1 1 80 5 167232018 167233589 AGTATACAGGACAAACCACGA 59 167231958 167231979 AGGTGTAGTAGTGTCTGATGTC 59 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 2 2 2 80 18 4077883 4077902 ATAACTCATACGTCCAGCCA 59 4077945 4078981 TGCCTCTTGCTACAGTCTC 59 NA Rattus norvegicus 81 AABR07004232.1 ENSRNOG00000048904 ENSRNOT00000075481 1 1 1 60 1 131585136 131585155 GAACACATGGAAACAACCCT 59 131585095 131585114 TATCTACCGCTCCTTGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359546 ENSRNOG00000029847 ENSRNOT00000041537 2 1 1 60 3 104675358 104675376 GAGCCACAGAGAAGATCTG 57 104675316 104675335 CCTTCTTAGGCTTTGAAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016992.1 ENSRNOG00000047272 ENSRNOT00000043553 2 1 1 87 15 5774227 5774702 ATGACTGGTACTGCCACAG 59 5774753 5774771 CTGTTCTCATTCCGTGCTC 59 NA Rattus norvegicus 81 Olr150 ENSRNOG00000017143 ENSRNOT00000023007 2 1 1 60 1 169386828 169386851 CTTTCTGCTTTATCTATCTGGTGG 59 169386791 169386809 GCGATGAGGTAGAGAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563307 ENSRNOG00000028984 ENSRNOT00000030832 1 1 1 60 1 89645975 89645993 GATGCTGACGACTTAGGAG 58 89645933 89645951 AGTACTGCAAGGGATTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000010626,ENSRNOT00000088917 3 2 3 107 6 106068445 106072524 GAACTAGTGAGCTCATGACAC 59 106072593 106072611 GTTCCAGCACCTCTTTCAG 59 NA Rattus norvegicus 81 Ino80d ENSRNOG00000024272 ENSRNOT00000035879 3 1 1 80 9 69843001 69843019 CAGTGGAACAGTGAAGGGT 60 69840231 69842957 TTCAAGAGGATGTGCTGGA 59 NA Rattus norvegicus 81 Slc38a10 ENSRNOG00000004604 ENSRNOT00000006225 2 1 1 80 10 109291732 109296977 GCTATCAGTCCAGGATCCC 59 109291670 109291688 AGGACCTCTTTGTCCTCTG 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 2 6 8 80 20 1960694 1960715 TCTATGTTCACCAAGATCTGGT 59 1960549 1960653 CTCTAGGGTCTTCCTCCAC 58 NA Rattus norvegicus 81 Cebpa ENSRNOG00000010918 ENSRNOT00000014517 1 1 1 60 1 91364504 91364522 AAGAGCCGAGATAAAGCCA 59 91364546 91364564 TCAACTCCAACACCTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phospho1 ENSRNOG00000005569 ENSRNOT00000007352 3 1 1 183 10 83640473 83642199 TGTCTAGGGTCTTGGATGTG 59 83642345 83642363 CATCGAAGTCGAAGGTCAG 58 NA InUTR Rattus norvegicus 81 AABR07044935.1 ENSRNOG00000059663 ENSRNOT00000084720 1 1 1 80 20 27197955 27198552 CTAAACAGACAACTCAACAGCA 59 27197896 27197919 GATCAGCTTAGTGTTTGACTTCTC 60 NA Rattus norvegicus 81 Gpr142 ENSRNOG00000024446 ENSRNOT00000035963 2 1 1 127 10 103349224 103349242 AATACGACAGTGTGGACGG 60 103349332 103350867 TGTAGTCAGGACGTTGACAG 60 NA Rattus norvegicus 81 AABR07061755.1 ENSRNOG00000042732 ENSRNOT00000056573 1 1 1 60 4 142453448 142453468 AAGCCAGAGAAAGTAGTTGGA 59 142453490 142453508 CTACCATGATGGAGACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552166 ENSRNOG00000049489 ENSRNOT00000074641 3 1 1 80 8 114200323 114201297 AAACCTCATCAGATTGGTGG 58 114200262 114200281 GCCACTACTGGTCTTAAACC 58 NA Rattus norvegicus 81 Klf14 ENSRNOG00000027557 ENSRNOT00000048436 3 1 1 60 4 58249916 58249934 CATCCAAGCGACATCAGTG 59 58249874 58249893 TGCGAAGACTTGTAATAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scrt1 ENSRNOG00000025594 ENSRNOT00000035423 3 1 1 85 7 117586761 117586779 CACATTCTCTTCGGCAGAC 59 117584768 117586715 TGAGGTATCCTTTATCTTGCAG 58 NA Rattus norvegicus 81 Cap1 ENSRNOG00000013492 ENSRNOT00000018711 3 1 1 80 5 140561254 140561606 TCAAAGTTCAGGTGATGGG 57 140561192 140561211 AGTTCTTACTCAGGTAAGCG 57 NA Rattus norvegicus 81 Tex43 ENSRNOG00000023034 ENSRNOT00000039486 3 1 1 86 18 51680896 51680915 TAAAGCAAGGGATGATCCCA 59 51680961 51682773 CTTCTGCTTGCTTTAGATTGAC 58 NA Rattus norvegicus 81 Sh3yl1 ENSRNOG00000005522 ENSRNOT00000068208 2 1 1 98 6 49860401 49860420 GTCAGAAGCAAAGAAGGCTG 60 49860481 49863329 TTTGCAATCACATGGGCAG 59 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690,ENSRNOT00000085074 2 2 2 80 10 65667705 65667725 TAAGATGCCCTGGAATATCGT 59 65666743 65667664 TCAGACAGACCTGATTGCTC 60 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041,ENSRNOT00000036156 3 2 2 80 1 265992752 265992770 ACACCACTGGTCCTATCAC 59 265992811 265998319 CATGAGTTGGATCTATGAGTGC 59 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000092079 1 1 2 234 15 5306564 5306582 TTCTGTTTCAGTGTCCAGC 58 5307860 5307878 ATGAACGGAGGACATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Sparc ENSRNOG00000012840 ENSRNOT00000017486 2 1 1 80 10 40751212 40751861 GAGGAGACAGGGTTACCTG 59 40751150 40751168 GACAGTTTCCTCTGCACCT 60 NA Rattus norvegicus 81 Gorasp2 ENSRNOG00000055853 ENSRNOT00000088097 2 1 1 80 3 56991417 56992791 ACATTACCAAGTCTGATGCCT 60 56992833 56992851 AGGGAGGTTGAAGTTGGAG 59 NA Rattus norvegicus 81 Rrp15 ENSRNOG00000002450 ENSRNOT00000003359 3 1 1 80 13 105160410 105160428 TTCTGCGAGGAATGGATGG 60 105156266 105160368 CTGATTTCACTTCGGTCTGTC 59 NA Rattus norvegicus 81 Olr785 ENSRNOG00000045817 ENSRNOT00000049984 2 1 1 60 3 103224039 103224059 GCACAGATACATACAAACTGG 57 103223999 103224017 CCCACAGACATGAATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prorsd1 ENSRNOG00000004145 ENSRNOT00000005504 1 1 1 120 14 113938953 113940211 CATCCGGAGGTGTTTACAG 58 113938851 113938872 GAACTGTGACTAACCAATAGCT 58 NA Rattus norvegicus 81 Mycbp2 ENSRNOG00000010479 ENSRNOT00000014583 2 1 1 80 15 93750016 93752819 CATTGAAATAGATGCTGGCCT 59 93749956 93749974 TTGACGAGCTGAGTTCCTG 60 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 3 2 2 80 1 72775636 72775654 CTCAGCCTTCATTGACCAC 59 72775697 72779292 TTGTCAAATGGTGCATTCAC 58 NA Rattus norvegicus 81 AC128618.1 ENSRNOG00000055221 ENSRNOT00000080859 2 1 1 73 6 107489658 107489676 AAGAAGCCGTGAACTACCT 59 107492191 107492209 TTTGGAAATCCCAAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 1 3 3 80 18 59994486 59995703 TTGTCAGATGACTTGTGTCAG 58 59994426 59994444 GTTCAGTGTCCCGTATACC 57 NA Rattus norvegicus 81 Pah ENSRNOG00000004302 ENSRNOT00000005844 2 1 1 80 7 28118236 28118254 TCTGCCATGAACTCTTGGG 60 28118298 28122143 ATGCAAGCCCAATTTCCTG 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 3 2 3 83 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068770 65070960 ATATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Dcaf17 ENSRNOG00000009403 ENSRNOT00000031463 1 1 1 80 3 57647572 57647593 TCATTCCAAGTCACCTATAGCC 60 57647634 57651023 GATGCAACACTGCTGACAC 60 NA Rattus norvegicus 81 Ankrd33b ENSRNOG00000010888 ENSRNOT00000059565,ENSRNOT00000077598 3 2 2 204 2 84436729 84436747 GATTCCTTCTACCCTCCGG 59 84394084 84436562 CAATAATAAGGCCAGTCCGG 59 NA DesignRelaxed Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000056436,ENSRNOT00000089402 1 3 3 80 2 195863943 195864923 TTTGGAGGCTGAGAACTTAGAG 60 195863884 195863906 GTACTGAAGTTTCCATGACTGAC 60 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 1 2 2 80 18 61689896 61689915 ACTTCATGGACATCAAGGAG 57 61686817 61689853 CATTAGATGACATGCTGCG 57 NA Rattus norvegicus 81 Matn1 ENSRNOG00000010932 ENSRNOT00000014666 2 1 1 80 5 149083560 149083578 CATCGTCTTCACTGATGGC 59 149083620 149084193 AACATCTTAAAGCCAAGGTCC 59 NA Rattus norvegicus 81 Mlf1 ENSRNOG00000012827 ENSRNOT00000017151 2 1 1 81 2 164570764 164572458 AAAGAAACTTTGGCCAGCT 58 164572497 164572521 CCTACTTTGGAATAGGTCATAACAG 59 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 1 1 1 60 7 15482985 15483371 GTTAAGTTTCCATACCGGCA 58 15482944 15482963 GTTGAGGCTGCTGTAATTGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom1r86 ENSRNOG00000051609 ENSRNOT00000087374 1 1 1 60 4 88271135 88271159 CTATATCTTCATAATCCCAGGTCAC 59 88271177 88271195 CAGTTGACAGGAGATCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edem1 ENSRNOG00000055365 ENSRNOT00000088273 1 1 1 80 4 140899883 140899903 TCAAGTTAGTGATCAACACCG 58 140899945 140901086 TTCCCAGAACCCTTATCGT 58 NA Rattus norvegicus 81 Tmem130 ENSRNOG00000025235 ENSRNOT00000039149 2 1 1 80 12 11820125 11823617 CCCATTAAAGAGTCCCTGG 57 11823660 11823679 CTTGGTGATGTAGGAGTTCG 58 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073,ENSRNOT00000071713 3 2 2 87 4 480760 482513 AGACCTTTGAAATTCGCGTG 60 480692 480710 CTAGATGGTGTGCCTCCTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 2 2 2 80 3 95313044 95397388 CTACCTGCTGAGGTACTGTG 60 95397431 95397449 TTGCACTGATTGGTCACCA 60 NA Rattus norvegicus 81 Lrcol1 ENSRNOG00000037466 ENSRNOT00000056712 1 1 1 86 12 52385714 52385732 AGGACTAGCAACAACCCAG 59 52385536 52385665 TACTTCTCCTTCAGGCTTGC 60 NA Rattus norvegicus 81 Otud6a ENSRNOG00000042687 ENSRNOT00000029298 2 1 1 60 X 70256803 70256822 CAAGCTCATATCCAGACCCT 59 70256845 70256863 GCTTTCGTCTTCCCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glb1l ENSRNOG00000019243 ENSRNOT00000026081 2 1 1 80 9 82403310 82403329 ATACTCAAGTTGGGAGCCAG 60 82402961 82403172 GTCATCAGCACCATTCCAG 59 NA Rattus norvegicus 81 RGD1359449 ENSRNOG00000059240 ENSRNOT00000090226 2 1 1 80 7 104508694 104509092 AGCTAGAGGATACGCTGGA 60 104509136 104509154 TGCATAAGACACAGCCTCC 60 NA Rattus norvegicus 81 Nox4 ENSRNOG00000013925 ENSRNOT00000018990 1 1 1 80 1 150866579 150866600 TCTTCTGGTATACTCACAACCT 58 150866640 150871124 GATACTTCAACAAGCCACCC 59 NA Rattus norvegicus 81 Rpl23a ENSRNOG00000023344 ENSRNOT00000035657 3 1 1 80 10 65441581 65441817 ATACTCTGATACGGCCTGAC 59 65441520 65441539 TGTTGGCAACATCTAGAGCA 60 NA Rattus norvegicus 81 LOC691352 ENSRNOG00000038422 ENSRNOT00000058517 1 1 1 80 10 44242511 44242725 GGCTCTGTAGAGGGTTACAC 60 44242450 44242471 GGTGTCACAAGTAGTTAAAGGC 60 NA Rattus norvegicus 81 Csmd3 ENSRNOG00000004937 ENSRNOT00000057108 2 1 1 80 7 86998958 87006349 CACCAGTCTGTATAGCACCT 59 86998897 86998915 ACGGATGAGGGAAGTTTGG 60 NA Rattus norvegicus 81 Nxph1 ENSRNOG00000008939 ENSRNOT00000011833 1 1 1 60 4 35279242 35279260 CCCAGAACCTTATTCCGAG 57 35279282 35279302 CTGAAGATCTGTGGAGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624,ENSRNOT00000083363 1 3 3 80 18 60702765 60709183 GAACTTTGGGCAGACTTACC 59 60709223 60709244 TATTCTCGCTTGTTCTCATTGG 59 NA Rattus norvegicus 81 Coq6 ENSRNOG00000011164 ENSRNOT00000014913 2 1 1 80 6 108076586 108076604 AGACTCCGTGTACGATGTG 59 108076646 108080400 TGAATATCATGTCCCAAGGCA 60 NA Rattus norvegicus 81 Mamdc4 ENSRNOG00000016584 ENSRNOT00000022390 2 1 1 80 3 2792674 2792777 CAGGGTGACTTCAAAGTGAC 59 2792613 2792632 GAACTCCATGTCATCCAAGG 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 2 2 3 80 X 65083768 65087330 ACTAAGCTCTGATGATGTACGA 59 65083709 65083728 ATAAGCTCTGTTGGGTCCTC 59 NA Rattus norvegicus 81 Olr623 ENSRNOG00000047555 ENSRNOT00000071021 3 1 1 60 3 76518382 76518402 TGGACATTTGCTATACCTCCT 59 76518342 76518360 CTCCTTACAAGCAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mboat2 ENSRNOG00000061050 ENSRNOT00000082657 2 1 1 80 6 44118928 44118948 AGCCACCTATCTGTATGTCTC 59 44118987 44122002 TTGTTAATGGCATCAGCTAAGG 59 NA Rattus norvegicus 81 Amn1 ENSRNOG00000036917 ENSRNOT00000055441 3 1 1 80 4 183671070 183676101 CCTGATAACAGATCATTCACGAG 59 183671012 183671032 TAAACAGACCAAGTCACTTGC 59 NA Rattus norvegicus 81 AABR07053379.1 ENSRNOG00000047116 ENSRNOT00000073004 2 1 1 60 3 103597452 103597471 AGAAAGCACAAAGCCATCTC 59 103597491 103597512 CAGTGTGAATGAAGAACATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sri ENSRNOG00000049780 ENSRNOT00000073790 3 1 1 86 4 23011457 23011475 AAACTGAGGGCTCTCACAG 59 23006449 23010614 CTGGATGAAATCATCGTACGAG 59 NA Rattus norvegicus 81 Olr581 ENSRNOG00000046632 ENSRNOT00000049950 1 1 1 60 3 75810274 75810294 TTTACCTCCTCATTATCCCGA 58 75810314 75810334 ACATCCTTATTCCGTAGACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650 3 1 2 80 11 75955063 75955082 GGGATATTTCCTGCAGATGC 59 75955123 75980375 AGATTGAAGAGGGTGTAGTCG 59 NA Rattus norvegicus 81 Cd52 ENSRNOG00000015403 ENSRNOT00000020688 3 1 1 187 5 152323319 152324363 GTGGTCCAGATACAAACAGG 58 152323151 152323169 ACATCGGTGATGGATGAGG 59 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 1 2 2 80 2 243453783 243453803 TGAACACCAGAATCAACAGGA 60 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 RGD1563620 ENSRNOG00000028052 ENSRNOT00000033132 3 1 1 88 2 166349679 166349749 ATACTTCCAAGCCAAGCCA 59 166349796 166349819 GGCAAGAATGAACTCACTATTAGG 60 NA Rattus norvegicus 81 RGD1564865 ENSRNOG00000038361 ENSRNOT00000058413 1 1 1 80 17 69468526 69468544 GGAGAGGCTATTCGAAGCA 59 69468585 69476409 TGTACTCCAAAGCTTTGTAGTG 59 NA Rattus norvegicus 81 Ldha ENSRNOG00000013009 ENSRNOT00000017468 3 1 1 81 1 102904966 102905328 CAAACCCAGTGGATATCTTGAC 59 102905367 102905388 TTGCAACCACTTCCAATAACTC 60 NA Rattus norvegicus 81 Hsdl2 ENSRNOG00000016692 ENSRNOT00000059458 3 1 1 80 5 76821414 76821432 GTCATTGCTGCAAAGACCA 59 76821475 76822379 AGCTGCTTCAATTTCTTCGG 59 NA Rattus norvegicus 81 Zfp458 ENSRNOG00000017986 ENSRNOT00000032909 2 1 1 89 2 86975601 86975619 ATACCTTGGTCCTGCTCAG 59 86975672 86976141 TTAGAGGAAGCAAGACCCA 58 NA InUTR Rattus norvegicus 81 Mylk4 ENSRNOG00000050349 ENSRNOT00000072764 2 1 1 80 17 33035665 33036987 GTCATGGAGTATGTGGAAGG 58 33037030 33037048 GATGGTATCCAGCTCTGTC 57 NA Rattus norvegicus 81 Ctxn2 ENSRNOG00000037146 ENSRNOT00000056054 3 1 1 60 3 117416580 117416599 CCTCTTCTACATGGGAGGAC 59 117416621 117416640 AGTGCATACTCAAAGGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga6 ENSRNOG00000001518 ENSRNOT00000002075 2 1 1 80 3 58492309 58492327 TCACAGTGACTCCTAGCAG 59 58492368 58492629 CTTTAACCTTGAGGCATATCCC 59 NA Rattus norvegicus 81 Olr183 ENSRNOG00000027423 ENSRNOT00000037868 3 1 1 60 1 169892808 169892827 GATTCACCCTTCATCCTTCC 58 169892767 169892786 CCAGAACTGTGACTCTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Soga3 ENSRNOG00000012324 ENSRNOT00000016712 3 1 1 86 1 31118438 31120321 GATCTCAAGGTTGCAAAGGA 58 31118371 31118389 TTCGTCTTCTGTTGTGGTC 58 NA Rattus norvegicus 81 Olr268 ENSRNOG00000053711 ENSRNOT00000087448 3 1 1 60 1 172753206 172753224 TGCCCAAGTCTAGCTACTC 59 172753246 172753266 ACCACTATGTAGAACACAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jdp2 ENSRNOG00000008224 ENSRNOT00000011339 2 1 1 88 6 109474898 109499251 TGAAGAGTGAGCTAGATGAGG 59 109499301 109499319 CTTCTTGTTCCGGCATCTG 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 3 2 2 80 7 143519387 143519544 GGTACCAGATCAAGGTCCA 58 143519325 143519344 AGATCTCATTCTTGGTGCTC 57 NA Rattus norvegicus 81 Serpinc1 ENSRNOG00000002783 ENSRNOT00000046512 2 1 1 80 13 78811195 78811217 GTAGAGATAGAAGACAGATCCCT 58 78811255 78811810 ACTGGTTATAGAAGGTTGCTC 58 NA Rattus norvegicus 81 C1qc ENSRNOG00000012804 ENSRNOT00000017065 1 1 1 167 5 155258042 155258335 ATGCTCAGGATGGTTGTAGG 60 155257894 155257912 AAGTCCATCATGCCCATCC 60 NA InUTR Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000091536,ENSRNOT00000025270 3 2 3 131 18 47630886 47630907 ATCTATTAGCATCCATGAGCCA 59 47630999 47633963 TCGTAGAATCCTTTGGCGG 60 NA Rattus norvegicus 81 Cbll1 ENSRNOG00000007253 ENSRNOT00000009566 1 1 1 80 6 50779921 50782319 CACAAGGTGATGAAGAAGGA 58 50779860 50779879 GCTGATTTCCAAAGAGTTCG 58 NA Rattus norvegicus 81 Pard3b ENSRNOG00000024345 ENSRNOT00000040778 2 1 1 80 9 68926501 68926522 AGACGTTATGAATGGTGAACAG 59 68926561 68939401 ACAGCTCTCGTCATATCACTC 60 NA Rattus norvegicus 81 Pard3b ENSRNOG00000024345 ENSRNOT00000040778 3 1 1 80 9 68868850 68926484 GTTGTTCTGGATTCTGCCC 59 68926527 68926546 TTTGTGCAGCATAAGTAGCC 59 NA Rattus norvegicus 81 RGD1564419 ENSRNOG00000050564 ENSRNOT00000075254 1 1 1 135 4 82301548 82301566 ACCTTGGGCTGCTTTAGAG 60 82303927 82303945 CTAGGACTGGAACTCGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Gimap7 ENSRNOG00000038740 ENSRNOT00000059167 3 1 1 97 4 78354395 78357313 TGTCCTGCAGAAGTCAAGG 60 78357371 78357392 TTTCCCTACCAGAACAATCCTC 60 NA InUTR Rattus norvegicus 81 Rnf6 ENSRNOG00000000968 ENSRNOT00000001282 3 1 1 103 12 10577157 10577178 CAGAGAAGAAGCCTATTACCAG 58 10577242 10578795 CGGATGTTATGTCTCCAGG 57 NA Rattus norvegicus 81 Vom1r84 ENSRNOG00000059448 ENSRNOT00000082459 1 1 1 60 4 88207880 88207901 CTGTTATGGAGATATGACCCTG 58 88207919 88207940 GATAGGCATTCATCACAAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030375.2 ENSRNOG00000049667 ENSRNOT00000072972 3 1 1 155 10 83104672 83104986 CCGAACCTCAAATGCTCTG 59 83109618 83109636 AACCACAGCTCGATCTCAG 60 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103,ENSRNOT00000089408 3 2 2 80 18 63236338 63240002 GGAAACCCTCAAAGGAGGA 59 63236276 63236294 CCTGACGAATGTGCATCAC 59 NA Rattus norvegicus 81 Slc35f6 ENSRNOG00000009459 ENSRNOT00000012558 2 1 1 81 6 27098003 27098626 CAGTGAAGTAATCACAGGTGAC 59 27097943 27097962 AAACTTCTCCTCTAGCACCA 58 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 1 1 1 88 10 13537927 13537945 GTTATGGCTGGGATCATCG 58 13537764 13537875 CTCCTGTAGAGGGTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 3 2 2 80 8 71918618 71918637 AAATCGTGAACTATGAGCCA 57 71919309 71923105 CTCCACTTAGAAGGATGTAGG 57 NA Rattus norvegicus 81 3298a3 ENSRNOG00000057560 ENSRNOT00000082597 2 1 1 60 20 2280138 2280157 GGGAAGAGTAGACTTACCCA 58 2280180 2280198 CCATCTCAAGGTGAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025952 3 1 3 80 5 173275823 173275844 CGTAAACTGATCAAGAGGACAC 59 173275883 173276000 CTCAAACTTGATCTGCTTCCT 58 NA Rattus norvegicus 81 Smurf2 ENSRNOG00000014623 ENSRNOT00000019781 1 1 1 80 10 95029125 95029145 CATGAACTCAAACCAAATGGC 59 95026620 95029085 CCAGTTTACGTAAAGCCTGAC 59 NA Rattus norvegicus 81 LOC100359802 ENSRNOG00000038520 ENSRNOT00000058749 2 1 1 80 17 66665216 66665615 ACCATTGATAAAGGCAGTACAG 59 66665157 66665175 TTTATGTTTGGGTCAGCCC 58 NA Rattus norvegicus 81 Mir6331 ENSRNOG00000049586 ENSRNOT00000071790 2 1 1 60 6 133878621 133878640 GTTCTTTGTGCTTGGTTTGG 59 133878661 133878681 TTAACAGCAACAACAGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6kl1 ENSRNOG00000005530 ENSRNOT00000007350 1 1 1 168 6 108966544 108973090 CATCAAGAAGGTGCAGGTG 59 108966050 108966068 GAAGATGGAGTCCTCGCTC 60 NA Rattus norvegicus 81 Rn60_13_0841.2 ENSRNOG00000051185 ENSRNOT00000076486 2 1 1 83 13 79148138 79148156 CATGTGCAGAAGGCTAAGC 59 79147842 79148091 AACATGGGCTTGATCACCT 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 3 3 3 80 3 95723752 95723964 AAGCAAGGATACAGGTGTG 58 95724008 95724026 CCTGTCTTCTCTGGTTCCT 58 NA Rattus norvegicus 81 LOC100360055 ENSRNOG00000050823 ENSRNOT00000031923 3 1 1 81 1 251363283 251363445 GGGATATGGTGTGATCTTTGC 59 251363222 251363240 CCCGAAGTTTCTCATGGTG 59 NA Rattus norvegicus 81 Hacd2 ENSRNOG00000038761 ENSRNOT00000003013 1 1 1 80 11 68925199 68925218 TTGTCCTGACTTCTTTCCAG 58 68900816 68925156 CACTCTGCACCTCTTTGAC 59 NA Rattus norvegicus 81 Grpel2 ENSRNOG00000042682 ENSRNOT00000065046 3 1 1 89 18 57042621 57043528 GGATTTAACACTGAGATACCAGAG 59 57042555 57042576 AATATCTTCGCATCTTCCACAC 59 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076101 2 1 2 80 12 28913030 28971112 TTGGAATCAAGGTATGGCTC 58 28971155 28971173 TCTTCTTCCGCTCAATGTG 58 NA Rattus norvegicus 81 Pla2g2e ENSRNOG00000017024 ENSRNOT00000022847 1 1 1 91 5 157330955 157332457 CTTCTGTGCTGGTAGAACGA 60 157332510 157332529 TATAAGTGCCCAGGTTGTGG 60 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467,ENSRNOT00000081958 1 2 2 80 9 82440879 82441074 GGCAACTCTGATTTCTCCTC 58 82441116 82441135 GGTTGTGGACGTAGAAACAG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000008319 3 7 9 98 4 14151453 14151471 GTTATTGGTGCTGTCCTGG 59 14151531 14159595 TTCTTCAAGGACAACTTCCCT 59 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 2 2 2 87 10 46314836 46327719 CATCAAATGCATGGACAAGGA 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 Cradd ENSRNOG00000008507 ENSRNOT00000063946 2 1 1 100 7 36407123 36407142 GGAATTTCCCTGGGTAAGAG 58 36395966 36395984 GCTTCTCAGGCAAATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rpp14 ENSRNOG00000039829 ENSRNOT00000061123 1 1 1 80 15 18632473 18632493 CAGCTACTGCTTATGAAAGGG 59 18632295 18632434 GTTCCTGAAACTCTAAGCAGAC 59 NA Rattus norvegicus 81 LOC100364027 ENSRNOG00000049045 ENSRNOT00000074989 2 1 1 80 20 32027034 32027451 TATATGGGAAGCACGGTGG 59 32026688 32026708 CAGAGAACAGGGTCAAATGAG 59 NA Rattus norvegicus 81 Nt5c1a ENSRNOG00000015283 ENSRNOT00000020524 3 1 1 81 5 140896498 140899858 CAGTATCAACCATTACGACCTG 59 140899900 140899918 GTAGGCCTTGAGGTAGCAG 60 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 1 2 2 80 13 107790701 107827401 GAACTCATCCAGCAAATAGTGAC 60 107790643 107790664 CCAGTGACTAACTTGATTGGAG 59 NA Rattus norvegicus 81 Rspo1 ENSRNOG00000009656 ENSRNOT00000012811 1 1 1 95 5 143005918 143005936 TGTACTTACACAAGGGCCG 60 143005994 143006310 TTTCACATTGTGCAGGACTG 59 NA Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000089242,ENSRNOT00000063900 3 2 2 81 6 108145860 108146043 GGAGAAATGAAAGAAAGTAGGGAG 59 108146083 108146101 TGGAGTCTGATACTGGCAC 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000015535,ENSRNOT00000046388,ENSRNOT00000086036 3 3 3 80 10 65588103 65588124 CCAGAAAGATGACAATGGTGTC 60 65588165 65588279 CCCTTGTCAACCTTGATGC 59 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288,ENSRNOT00000092075 1 2 2 80 20 27988260 27988281 TGAAGGAAGAAAGTACTGTGAG 58 27988320 27989450 CCAATGATGAATTCACCACAC 58 NA Rattus norvegicus 81 Pxk ENSRNOG00000008024 ENSRNOT00000010763 1 1 1 80 15 18584292 18591995 CAACAGCTTGCAGATTACAG 58 18584231 18584249 GCTATGAATTCACGGTCCA 58 NA Rattus norvegicus 81 Mppe1 ENSRNOG00000018648 ENSRNOT00000025164 3 1 1 86 18 62952417 62952435 TCAGAGGATGTTCAGGCAC 59 62951551 62952370 TTACTCATCTGGTAGTGGAAGC 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 2 2 2 80 8 116327227 116327680 TCACAGAACTTAGCCAGATGG 60 116327721 116327740 CCCAGAAGATAACACCAGCT 60 NA Rattus norvegicus 81 Appbp2 ENSRNOG00000027654 ENSRNOT00000033684 3 1 1 80 10 72527338 72527356 GCCTTCAGTTGTGTACCCT 60 72522827 72527294 GCACATGAAGCAACCTCAC 60 NA Rattus norvegicus 81 Ptprn ENSRNOG00000019587 ENSRNOT00000026654 1 1 1 80 9 82451769 82451932 CCTGACTTCTTACCCTATGACC 60 82451710 82451729 GGCGTTGATGTAATCACTCC 59 NA Rattus norvegicus 81 Lrrcc1 ENSRNOG00000010891 ENSRNOT00000014762 2 1 1 80 2 88398559 88398579 CTTGAGAACTCTGGAAAGAGC 59 88397578 88398518 TGGATCAGTCTCATCTGTGC 60 NA Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 2 1 1 60 3 44833037 44845171 CTATGTGGCTTGAGAGCTG 58 44845195 44845213 GGTCACTCTCGAGTCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc3 ENSRNOG00000017933 ENSRNOT00000024110 1 1 1 133 17 76995308 77089828 GAAGACAACAGGCTCATGTG 59 76995194 76995212 ACCTTCTTGACTCGCTCTC 59 NA Rattus norvegicus 81 Snf8 ENSRNOG00000006500 ENSRNOT00000008964 1 1 1 80 10 83863575 83863595 CTTCTATTATGAACTGGGCGT 58 83863636 83864875 TCCAGAGTTATCAGACCTCC 58 NA Rattus norvegicus 81 Treml1 ENSRNOG00000040109 ENSRNOT00000018138 3 1 1 80 9 14597725 14598324 AAATTCAGGCATGGACCCT 59 14597663 14597683 AGCCTCATATGTGGTATGTCC 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076212,ENSRNOT00000057718 1 2 4 60 X 71968352 71968370 GAGACACCCACACCTACTG 59 71968394 71968412 TGCTTGGAGGAGGTAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sugp2 ENSRNOG00000020269 ENSRNOT00000027457 2 1 1 80 16 20937216 20937238 CAGGATAAATCTAAACGGTACGG 59 20930028 20937178 TGTCCGTAAGAGATCTTGAGC 60 NA Rattus norvegicus 81 Olr1637 ENSRNOG00000025640 ENSRNOT00000034647 2 1 1 60 15 27997547 27997568 GAAGATGTTGAGCAATTTCCTC 58 27997508 27997527 AGTAATACAGGCAGCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mob2 ENSRNOG00000020044 ENSRNOT00000027195 1 1 1 96 1 214962094 214971637 GTGCTCAGGAAGTCTAAAGC 59 214962017 214962035 TGATCCTGGACTTGGTGTG 59 NA Rattus norvegicus 81 Mob2 ENSRNOG00000020044 ENSRNOT00000027195 2 1 1 98 1 214962094 214971637 GTGCTCAGGAAGTCTAAAGC 59 214962015 214962033 AGTGATCCTGGACTTGGTG 59 NA Rattus norvegicus 81 Pcyox1l ENSRNOG00000019643 ENSRNOT00000026583 3 1 1 83 18 57022575 57022593 GTTCTGGTTTGCTGAAGCT 59 57022145 57022528 CTTTCCCTTCTGTGCTGTG 59 NA Rattus norvegicus 81 Rsf1 ENSRNOG00000024194 ENSRNOT00000037050 3 1 1 80 1 162643719 162643737 GTGAAGAAGCAGTCCTTCC 58 162643778 162648558 ACAGAAGAATTAGTTCTGGGTG 58 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307,ENSRNOT00000086502 1 2 2 101 15 14560246 14565409 ATACATCTGTGGTCTTCGGG 59 14560164 14560182 GGTATCTCTGTCCCGAGGA 60 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181,ENSRNOT00000090680 2 2 2 80 3 112693805 112693824 TGCAAGTCAGTTCATCACAG 59 112691061 112693764 GGAATTGTAATCGCAGTCAGG 60 NA Rattus norvegicus 81 Zfp672 ENSRNOG00000002713 ENSRNOT00000003639 1 1 1 80 10 43757049 43757067 ACTGGCCTAGAAGAAGGTG 59 43755316 43757005 TGCAACAACTTTGGCTGAG 59 NA InUTR Rattus norvegicus 81 Acadl ENSRNOG00000012966 ENSRNOT00000017686 1 1 1 80 9 73863995 73864015 CAACATTGCAGAGAAACATGG 59 73862475 73863955 TTTGAGTATGCTTGCTCTTCC 59 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 3 2 2 80 6 76063467 76063486 ACCATGACCAATGTCTTCCT 59 76059980 76063429 CAGGTAGGTCTTATAGTCCATCTC 60 NA Rattus norvegicus 81 Fbxo6 ENSRNOG00000009217 ENSRNOT00000012301 3 1 1 81 5 164959611 164959635 TGACTGGAAGATCTTCTATATCCTG 60 164957652 164959573 TGATCTCAGGTTCTCTTCGG 59 NA Rattus norvegicus 81 Car12 ENSRNOG00000017766 ENSRNOT00000023952 3 1 1 80 8 72448126 72448144 AGTTTGATGAGAGGCTGGT 59 72457193 72458020 AAAGGATGATACCCAAACTCAG 58 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000084324 1 1 4 60 20 3115840 3115858 GAACACTTAGCACTGCCTG 59 3115879 3115900 CTCTAGACTGTACTTGTGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066,ENSRNOT00000071760 3 2 2 60 X 73616561 73616579 ATGGCGATATGGACAAGCT 59 73616603 73616621 TCCACCAACATGTAGGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999,ENSRNOT00000076272,ENSRNOT00000087506 2 3 4 80 13 78504235 78504253 GAGCTTCCAGTCAATACCC 58 78502291 78504191 ACTGGTCGATGATTCTCAC 57 NA Rattus norvegicus 81 AABR07030970.1 ENSRNOG00000049635 ENSRNOT00000041082 2 1 1 80 10 111280518 111280537 ATCAGAAACAAACAGCCGAC 59 111279299 111280478 TATCTGTTGGTGTATCATTGGC 59 NA Rattus norvegicus 81 Pde4c ENSRNOG00000019518 ENSRNOT00000026457 1 1 1 80 16 20446031 20446126 TTCTAACAAGTTCAAGCGCA 59 20445970 20445988 TCTGACACTTGGTTCCCTG 59 NA Rattus norvegicus 81 Dbf4 ENSRNOG00000050482 ENSRNOT00000072455 3 1 1 93 4 22905428 22906268 GTGAACCGGACTTACAAGC 59 22906325 22906343 CGATATCAAACGGACTGCA 58 NA Rattus norvegicus 81 LOC100910668 ENSRNOG00000046526 ENSRNOT00000074267 1 1 1 80 9 14951090 14951807 CAAGTGACTTCGGAGAGGA 59 14951847 14951869 CCCAAATATCTTCCACTGATGAG 59 NA Rattus norvegicus 81 LOC100910668 ENSRNOG00000046526 ENSRNOT00000074267 2 1 1 83 9 14951090 14951807 CAAGTGACTTCGGAGAGGA 59 14951852 14951872 TGTCCCAAATATCTTCCACTG 58 NA Rattus norvegicus 81 LOC100362078 ENSRNOG00000024026 ENSRNOT00000032208 3 1 1 87 8 37064742 37069415 TGTTCATCCAAGTCCAAGCT 60 37064674 37064692 GTAGTGCAGTTGCTCTTGC 60 NA Rattus norvegicus 81 Fkbp14 ENSRNOG00000009886 ENSRNOT00000013205 1 1 1 80 4 84764865 84767956 CCCTGTTTCATTCCACTCAC 59 84764804 84764822 AGCCTTTGAGAACCTCCAG 59 NA Rattus norvegicus 81 Fkbp14 ENSRNOG00000009886 ENSRNOT00000013205 3 1 1 81 4 84764865 84767956 CCCTGTTTCATTCCACTCAC 59 84764803 84764821 CAGCCTTTGAGAACCTCCA 60 NA Rattus norvegicus 81 Olr1579 ENSRNOG00000049212 ENSRNOT00000045429 3 1 1 60 13 91638551 91638574 GTCTTCTTTACCCTATACATCCTG 58 91638514 91638535 GGATAATGGTCACAATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifi30 ENSRNOG00000019387 ENSRNOT00000026225 3 1 1 82 16 20429360 20430174 TCAACGAGAAACCGTTGAC 58 20430307 20430325 GATGTCTGGCTTCTCTGTC 58 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672,ENSRNOT00000078647 1 2 2 80 10 12989799 12989900 GACTGGATGGTCTGTGGAG 60 12989737 12989756 AATGGGAAAGACCGTAGTGG 60 NA Rattus norvegicus 81 Cyp27a1 ENSRNOG00000017188 ENSRNOT00000023152 3 1 1 80 9 81995673 81995692 AATTGCTCAGTCCTCAAGAG 58 81995734 81996995 TCAGTGTATTGGATGTCGTG 58 NA Rattus norvegicus 81 AABR07021930.1 ENSRNOG00000037928 ENSRNOT00000029787 2 1 1 80 13 99346048 99346066 AGAGAAGTTCTCCACCTGG 58 99346110 99346230 TGTTCCTCTGTTTCCAGGG 59 NA Rattus norvegicus 81 AABR07016805.1 ENSRNOG00000028222 ENSRNOT00000037897 2 1 1 60 14 115116759 115116777 TCGACACCAACTGTTACAG 57 115116717 115116735 GGACAGATGGAACTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 1 2 2 80 6 110649115 110660491 ACAGACACTAAGCCAGATCG 60 110649054 110649073 GAAGACAGGCTCAAGTTCAG 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 1 3 3 80 17 66462653 66462673 TCTTTGAAATGTTGCTGGAGG 59 66462709 66463403 CTTGTAGATGTACCTTCACTATGAG 59 NA Rattus norvegicus 81 Alkbh5 ENSRNOG00000028341 ENSRNOT00000034006 2 1 1 80 10 46915952 46915971 AGATCACTCACTGCATACGG 60 46916010 46926514 GTGCATCTAATCTTGTCTTCCTG 60 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 2 1 1 175 X 106791472 106791964 CTTGCTTGAATTCAGCAGG 57 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hoxb9 ENSRNOG00000007573 ENSRNOT00000009951 2 1 1 99 10 84120369 84120387 AGGAAGCGAGGACAAAGAG 59 84123019 84123038 GTATTTGGTGTAGGGACAGC 58 NA DesignNoJunction Rattus norvegicus 81 LOC688922 ENSRNOG00000027445 ENSRNOT00000035326 1 1 1 60 4 66336213 66336233 CCTCTATATCCGTTCTTGGCT 59 66336173 66336191 GTTTCCCACTGTGACACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mlf2 ENSRNOG00000016589 ENSRNOT00000022467,ENSRNOT00000088622 2 2 2 80 4 157455004 157455318 ATGATTGGGAACATGGAGCA 60 157455360 157455379 GTTGGAGTAGGAGATGACCG 60 NA Rattus norvegicus 81 Hagh ENSRNOG00000014743 ENSRNOT00000020192 2 1 1 80 10 14227253 14227271 ACAACCTTAAGTTTGCGCG 60 14227315 14229792 CATTCTTCTCCTTGGCCCA 60 NA Rattus norvegicus 81 Immp1l ENSRNOG00000004829 ENSRNOT00000006406 1 1 1 80 3 96002549 96023072 AGAGCCGTAACTATGTACCA 58 96023115 96023133 CGTAACATCTGGAATCGGT 57 NA Rattus norvegicus 81 Rspo3 ENSRNOG00000011568 ENSRNOT00000015395 2 1 1 81 1 30713329 30713347 TTGGAAAGTGCCTTGACAG 58 30713389 30718307 TCACAGTGTACAATACTGACAC 58 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 2 3 3 80 15 24161529 24164290 AACGCAAACAGTATCACTCTG 59 24164331 24164350 GTTGTTCTCATTGAAGCGGG 60 NA Rattus norvegicus 81 Hdac11 ENSRNOG00000006824 ENSRNOT00000008962 2 1 1 80 4 122793062 122795930 GATCGCTTTGCTAAAGAGGC 60 122795971 122795991 CACCTTCTCCAGATACTCCTC 59 NA Rattus norvegicus 81 Gimd1 ENSRNOG00000042721 ENSRNOT00000064628 3 1 1 81 2 237704806 237704826 GTCCATAGAGCTGATATGCCT 59 237704866 237713510 AAGAATCTCCCAGAAGTTCCTG 60 NA Rattus norvegicus 81 Olr775 ENSRNOG00000045988 ENSRNOT00000052294 3 1 1 60 3 103043375 103043394 GGTAATGGCTTATGATCGCT 58 103043334 103043353 CATGGTGGTGAAATAGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lamp2 ENSRNOG00000000164 ENSRNOT00000000177 3 1 1 80 X 124745155 124750130 GTGCTGTACCTAAAGGAATCC 59 124745095 124745116 TACTGCACTTAAAGATGACACC 59 NA Rattus norvegicus 81 Zrsr1 ENSRNOG00000009639 ENSRNOT00000012767 2 1 1 60 14 107751319 107751337 CACTCCTCCAAGAGAAGCA 59 107751359 107751379 GAGATTTCTTCCACCTGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr292 ENSRNOG00000057889 ENSRNOT00000083924 2 1 1 60 1 212885937 212885955 CCTGATGTTGCGTCTACCA 60 212885977 212885997 AATCTCACAGAAGAAGTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561381 ENSRNOG00000003606 ENSRNOT00000004798 2 1 1 60 14 21163895 21163913 TTATGATGGTGCTCCACCT 58 21163935 21163955 TCTATCTTGTACTTCTTGCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561381 ENSRNOG00000003606 ENSRNOT00000004798 3 1 1 60 14 21163942 21163965 AAGTACAAGATAGAGTACCCTGTC 59 21163981 21164002 TGAACATATACCCATTCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro1a ENSRNOG00000019430 ENSRNOT00000026496 2 1 1 80 1 198127103 198127123 CAAGTTCATGGCTCTGATCTG 59 198126228 198127061 TCTACTCGTCCAGTCTTGC 59 NA Rattus norvegicus 81 LOC688684 ENSRNOG00000008516 ENSRNOT00000011244 1 1 1 60 5 125345466 125345484 TGTCAAGGAGCTGGAAGTG 60 125345424 125345442 GTGAGCAATCTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000047169 ENSRNOT00000075173 1 1 1 60 1 259665523 259665541 CTCGAGCAATTAGGTTGGG 58 259665481 259665501 CCTAGAATAACCCGATGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000047169 ENSRNOT00000075173 3 1 1 60 1 259665527 259665545 AAGGCTCGAGCAATTAGGT 59 259665485 259665504 GAATAACCCGATGTCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a1 ENSRNOG00000004749 ENSRNOT00000006340 2 1 1 60 13 110678558 110678576 GCTAACACCAGCAATTCCA 59 110678598 110679882 TTCTCAACTTCTCTGGCTCTG 60 NA DesignRelaxed Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000084800,ENSRNOT00000028406 3 2 2 80 1 221311458 221311476 GGTACCCAGAACCACTCAC 60 221310893 221311416 TCTTACAGGTCAGAACTTCCC 59 NA Rattus norvegicus 81 LOC100909692 ENSRNOG00000046043 ENSRNOT00000072524 2 1 1 60 3 103485061 103485080 CACATCTCTGTTGTGGTCCT 60 103485020 103485038 GCGAAGGCCATGTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samd15 ENSRNOG00000050413 ENSRNOT00000074634 2 1 1 129 6 111224619 111224638 AGGACGTAGACATCCTAGGA 59 111225596 111241159 AGATGGGAGCCTTCATGTC 59 NA InUTR Rattus norvegicus 81 LOC100363914 ENSRNOG00000048882 ENSRNOT00000071450 2 1 1 80 12 2948793 2948811 CATCACTGTGCTGAAGCTC 59 2948854 2950297 AGAAACTCAGTGCCTTTGAC 59 NA Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 2 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981793 CCCACAGAACATAACAAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000091985,ENSRNOT00000078701,ENSRNOT00000080317 3 6 6 90 19 33986090 33986108 CCCTCTTCACTTAAGCCGA 59 33986162 33986505 CATGAGCAGCAAGAAGCTG 60 NA Rattus norvegicus 81 Ubl3 ENSRNOG00000000921 ENSRNOT00000061229 3 1 1 88 12 7904379 7904399 ACGAAAGAGTTCCTCTTCTCC 60 7904449 7906876 TCTTCTTCCCAGTCCATGG 59 NA Rattus norvegicus 81 Il15ra ENSRNOG00000018706 ENSRNOT00000025252 2 1 1 81 17 70466274 70467725 AACCTCAAGTGTATCAGAGACC 60 70466214 70466232 GTTGTGAGGTCACCTTTGG 59 NA Rattus norvegicus 81 Gpr12 ENSRNOG00000039832 ENSRNOT00000061129 3 1 1 60 12 10256668 10256689 GTACAATTCCATCATCAACCCT 59 10256709 10256728 GGCTTTCTGGATCTCTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000084292,ENSRNOT00000080109 1 2 2 80 7 141397229 141397248 GAGTCAGATTTCTCTGGTCG 58 141392282 141392882 TTGAGAGTGGCTGATATGGA 58 NA Rattus norvegicus 81 AC113925.2 ENSRNOG00000061299 ENSRNOT00000090745 1 1 1 138 1 168957928 168958585 GAGAACTTCAGGCTCCTGG 60 168958687 168958705 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974,ENSRNOT00000085188 1 2 2 80 13 100308200 100312024 CATCAACAAGTACACCTGAACC 60 100308141 100308161 AGATGACAGGTGACTTACTGC 60 NA Rattus norvegicus 81 Gp6 ENSRNOG00000047204 ENSRNOT00000071927 2 1 1 80 1 73046104 73046125 TGCTCATATCAGAATGAGAGTC 58 73046165 73047556 GGGCTTAGAGTAAACACCTG 58 NA Rattus norvegicus 81 Abcb11 ENSRNOG00000050860 ENSRNOT00000075107 2 1 1 80 3 55548433 55551656 GTCATAGGTCTGAGTATAGCCA 59 55548374 55548394 GACTTCATCAGCAATAGACCC 59 NA Rattus norvegicus 81 Pitx3 ENSRNOG00000019194 ENSRNOT00000026013 2 1 1 81 1 265888917 265888935 TCATTGTCAGATGCAGGCA 60 265888675 265888872 CCTTCTCCGAGTCACTGTG 60 NA Rattus norvegicus 81 LOC100910893 ENSRNOG00000048609 ENSRNOT00000049527 3 1 1 60 3 77261821 77261839 GATTACCATTCTGTGGCCC 58 77261863 77261881 AACAAGGGCTGCAAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53bp2 ENSRNOG00000003237 ENSRNOT00000004330 2 1 1 80 13 100844253 100844273 CCAAGATGCAGGTGTAAAGAG 59 100844311 100845757 CTAGGACTGTTAACTCCATTCTC 58 NA Rattus norvegicus 81 Stk16 ENSRNOG00000019294 ENSRNOT00000026194 2 1 1 80 9 82413649 82413668 GTTCCAGAAAGGTGACAGTG 59 82413711 82413838 AATGCTGAAGAATGCCTGG 59 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000084848,ENSRNOT00000008503 3 2 2 80 X 135312290 135312311 GCAATTGTACAATCAGTTGGAG 58 135311670 135312250 GTGGTCAGTTTCTACCTTCC 58 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521,ENSRNOT00000086038 2 2 2 80 6 53732300 53732320 TCACTCACTACTGTATGGCAC 60 53728197 53732261 TTTCGAGAATCATCACCTAGGA 59 NA Rattus norvegicus 81 LOC499219 ENSRNOG00000024789 ENSRNOT00000034019 2 1 1 79 1 169145702 169145720 CAGAGAAGAGCCTTGTTGG 58 169151922 169151940 CTTCACCTTCATGCTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Zranb2 ENSRNOG00000009990 ENSRNOT00000055259 1 1 1 80 2 263872778 263874471 AAATCAAGATCCAGCTCCAG 58 263874513 263874533 CAGGAGATGATGAAGAACTCG 58 NA Rattus norvegicus 81 Eid1 ENSRNOG00000008452 ENSRNOT00000042411 2 1 1 60 3 117938633 117938651 TACGAAGAAAGCAACGAGC 59 117938675 117938693 CTACCTCCATATCGCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med1 ENSRNOG00000005606 ENSRNOT00000067901 3 1 1 80 10 86122612 86122632 CTAAGATGTATCTGGCTCTCC 57 86121919 86122571 TAGCATTAGTTGCCTTCCAG 58 NA Rattus norvegicus 81 Ccdc134 ENSRNOG00000007262 ENSRNOT00000056048 1 1 1 80 7 123369810 123375461 GGACCGAGTTTATTCCTAGCA 60 123375503 123375521 GCTTCTCCTCCTTCTTCCG 60 NA Rattus norvegicus 81 LOC102553814 ENSRNOG00000042321 ENSRNOT00000067452 2 1 1 75 3 64554930 64554948 TATGGCAAGCTTCCTACGG 60 64554873 64554892 CTCTTTACTGAACTGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc11 ENSRNOG00000039743 ENSRNOT00000060971 3 1 1 81 1 31934952 31934971 CACCTTTGGGATCTTCATCC 58 31926337 31934910 ACCCATCACTAGTACAAAGGA 58 NA Rattus norvegicus 81 Rpp38 ENSRNOG00000038025 ENSRNOT00000057855 2 1 1 86 17 78915703 78916033 CTTCTGCACAGCATCTCTG 59 78916083 78916101 AATTCCTTCCGAAGGAAGC 58 NA InUTR Rattus norvegicus 81 Fgfbp3 ENSRNOG00000022796 ENSRNOT00000033780 3 1 1 80 1 255557034 255557053 CAGACAGCCGTATAAAGCAG 59 255556689 255556991 ATCCTCGGATCGAATTCCA 58 NA InUTR Rattus norvegicus 81 Olr240 ENSRNOG00000030648 ENSRNOT00000049763 1 1 1 60 1 172100818 172100837 TCTACACAGTGGTCATTCCT 58 172100860 172100878 ACATCCCTGTTCCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361,ENSRNOT00000077941 1 2 2 80 2 179638750 179648585 GTGACAGAGGCTTATCAACAC 59 179638690 179638709 CCACATTGATAGCAGTCACC 59 NA Rattus norvegicus 81 Repin1 ENSRNOG00000008239 ENSRNOT00000011032 1 1 1 155 4 78233380 78233401 AGGGATGTCTTTATTGCTACAG 58 78233517 78234742 TCTTCCTCTGCCTGAAGAC 59 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000019206 ENSRNOT00000025988 1 1 1 111 1 194768973 194769331 TCTTATGTCGTCGGTGGAG 59 194768880 194768898 TCTGGAACTTGGTCAGCAG 60 NA Rattus norvegicus 81 Cxcl2 ENSRNOG00000002792 ENSRNOT00000003745 2 1 1 80 14 18733080 18733100 GACTTCAAGAACATCCAGAGC 59 18732902 18733042 CTTAAGAGTGGCTATGACTTCTG 59 NA Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000064310 3 1 2 81 5 159735504 159735696 GCGTGAGTTTGCTAATTCTG 58 159735740 159735758 CATCTCTGGTGACAGTTGC 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000025731,ENSRNOT00000051067,ENSRNOT00000025700 3 4 4 80 17 70702956 70702975 CGTATTGGTCATCTGTCACC 59 70703018 70703373 TATGGCATCTCCTCTGCAC 59 NA Rattus norvegicus 81 Lzts1 ENSRNOG00000011826 ENSRNOT00000015799 2 1 1 83 16 22295795 22297894 TGGAAATGAGTTCAGACAAGG 58 22297939 22297957 AAGAGTGGAGAATGGCTCC 59 NA Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 1 1 1 74 19 54553783 54574634 AGACCTACTCGGATGGAGG 60 54574672 54574690 TCTGTCGTACACCATAGCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055827.1 ENSRNOG00000059620 ENSRNOT00000091611 1 1 1 91 7 10629668 10629689 ATGACCTTGTCACCGAGAG 59 10629744 10629762 TTCTTCACCCATCAGGCTG 60 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000049723 ENSRNOT00000074596 1 1 1 83 16 5082805 5082823 GAAACTCTGGCTGGAGAGG 60 5087447 5087465 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 2 2 2 78 4 82159735 82159755 GATGAAGAAGATCCACGTGAG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Lgsn ENSRNOG00000012205 ENSRNOT00000016316 2 1 1 85 9 37477086 37477106 CCAAGATCAGATACCAGTGGT 59 37477151 37483653 GAGTGTGATCAGTATTCGGGT 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 3 2 2 80 7 123047241 123052963 CAGCACAGAATCATCCTTGG 59 123053005 123053024 AAGTTCACATCAACCTCCAC 58 NA Rattus norvegicus 81 Olr267 ENSRNOG00000049197 ENSRNOT00000075297 2 1 1 60 1 172729124 172729144 GTTGAACCCTCTCATCTACAG 58 172729165 172729184 ATGTTTCTTCAGAGCACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 1 2 2 80 9 10274750 10275241 CACCAGCAGTACATAGATGTG 59 10275283 10275301 ACTCTCCTGCAGTAACGTG 60 NA Rattus norvegicus 81 Ccdc175 ENSRNOG00000004774 ENSRNOT00000006346 2 1 1 80 6 94882055 94886232 ATATCTCAAATACAGCAGGTGG 58 94881996 94882014 CGTGTTCAGTCTATCTCGG 58 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 3 1 1 68 16 21085680 21087803 GTAAAGCTGGATCTAGAAGGG 58 21085632 21085651 GAAAGTCATCTTGTAGCGGC 59 NA DesignNoJunction Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 3 1 1 60 15 19196492 19197508 GTTCCCTGCCTTTAATTGTC 57 19197915 19197934 TTATTCTCACTGAAGCAGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC102547811 ENSRNOG00000046212 ENSRNOT00000075433 1 1 1 80 19 389939 389961 CAACTTAGAGATGGAGAACACTG 59 390000 390650 AGCAGGTTTCTAGAGAAGGT 58 NA Rattus norvegicus 81 Ttc17 ENSRNOG00000010495 ENSRNOT00000014088 3 1 1 80 3 83238620 83248529 AGACTTGAAAGCACAGTGG 58 83238558 83238579 CTCTTCTGACATCTTTGTTTCC 57 NA Rattus norvegicus 81 Vil1 ENSRNOG00000015408 ENSRNOT00000021432 1 1 1 80 9 81695722 81696435 GGAGGATAGAGGCTATGCAG 59 81696477 81696496 GGACTACATAGCAGTCACCA 59 NA Rattus norvegicus 81 Pmm1 ENSRNOG00000005358 ENSRNOT00000007164 3 1 1 83 7 123184330 123184348 CTACTGCCTGGACAGTCTG 60 123183989 123184283 AAGTCATTCCCACCAGGAC 59 NA Rattus norvegicus 81 AABR07040617.1 ENSRNOG00000043306 ENSRNOT00000067828 2 1 1 80 X 106234723 106234745 GTAGTAGACATTTGTGTCCAGAC 59 106234889 106235546 TTCCACTTCAATGGCTTCC 58 NA Rattus norvegicus 81 Zfp143 ENSRNOG00000010087 ENSRNOT00000013733 2 1 1 80 1 174731248 174731266 CAAGTAGCCACAGTAACCC 58 174731309 174734078 TATGTTGACGTGTTGAGTCC 58 NA Rattus norvegicus 81 Mtss1l ENSRNOG00000017500 ENSRNOT00000023645 1 1 1 80 19 40908176 40908195 CAGTACTCCAGTGGCTACAG 60 40907923 40908133 GTAGTCTGAGCCTTGGGAG 59 NA Rattus norvegicus 81 Mtss1l ENSRNOG00000017500 ENSRNOT00000023645 3 1 1 82 19 40908285 40908470 ATAGCAGCCAAACATGGTG 59 40908221 40908239 TGTTCTAGGCTCAGTCCAC 59 NA Rattus norvegicus 81 RGD1566270 ENSRNOG00000048003 ENSRNOT00000048356 2 1 1 60 3 58009259 58009280 CAAGTTAAAGGCAAGATTCTGG 58 58009220 58009240 AGTGCTTGATGTACTCAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Larp1b ENSRNOG00000038366 ENSRNOT00000090861 2 1 1 80 2 127863199 127863218 ACAGCTCTAGATGTCAACCT 58 127863261 127865663 TATCCCGTCTCCAACTTCG 59 NA Rattus norvegicus 81 Mnat1 ENSRNOG00000007267 ENSRNOT00000010163 3 1 1 80 6 96073231 96079550 TTTAGATGAGCTGGAGAGCTC 59 96079590 96079610 ATTTCCAGCTGGGTAGATCTG 60 NA Rattus norvegicus 81 Cltc ENSRNOG00000004291 ENSRNOT00000005987 2 1 1 80 10 74048670 74048690 AACCATCTTTGTTACTGCTCC 59 74045974 74048630 CAAACTGATAGGACTTGTCCC 59 NA Rattus norvegicus 81 LOC100365556 ENSRNOG00000016910 ENSRNOT00000022755 2 1 1 80 3 12306769 12306788 GACAACTACAAGCGAACTCG 59 12217686 12306732 CAGAAGGTAGATTCCTAGATAAGGA 59 NA Rattus norvegicus 81 Nubpl ENSRNOG00000027444 ENSRNOT00000038074 1 1 1 80 6 72996418 72996632 GTATTGCTTGTATGTCGATGG 57 72996673 72996692 TGGCTGACATTACCATAAGG 57 NA Rattus norvegicus 81 Aldh1l2 ENSRNOG00000008586 ENSRNOT00000059639 3 1 1 80 7 26404550 26404570 AAACGGACAGTTTGTAGATGC 59 26404611 26405136 ACTCTGCATAGCGTAGTTCC 60 NA Rattus norvegicus 81 Ptchd2 ENSRNOG00000026447 ENSRNOT00000036647 2 1 1 80 5 165073172 165081774 GTCTACTAGCAAAGTCCAGG 58 165073111 165073130 ATGTCGTTATTGAAGGTCCG 58 NA Rattus norvegicus 81 Itga8 ENSRNOG00000016538 ENSRNOT00000022711 1 1 1 80 17 79675480 79675498 GCTGTCTACTACTGTCCCT 58 79644796 79675436 TTTCCTGTTGTTGGTGGTG 59 NA Rattus norvegicus 81 Cd209b ENSRNOG00000029881 ENSRNOT00000061749 3 1 1 80 12 2826062 2826180 TTGATTCCATGGAGGACGG 60 2826000 2826020 CAGAATTTGGTCGTAGTCTGG 59 NA Rattus norvegicus 81 Degs1 ENSRNOG00000003223 ENSRNOT00000004319 2 1 1 80 13 100669288 100672613 GGAGATCTTAGCGAAGTATCC 58 100669228 100669247 AGCATTGAGGTTACAATCCA 57 NA Rattus norvegicus 81 Tubb6 ENSRNOG00000018371 ENSRNOT00000024947 3 1 1 115 18 63131112 63131130 GAAGTGATCAGCGATGAGC 59 63131205 63132710 ACGTACTTCTTAGAGGATGACTC 59 NA Rattus norvegicus 81 Cyba ENSRNOG00000013014 ENSRNOT00000017564 1 1 1 81 19 55252349 55252367 GAGTGCTCATCTGTCTGCT 60 55252097 55252304 AGGTACTTCTGTCCACACC 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646,ENSRNOT00000089750 3 2 2 80 18 44875402 44878136 TTCAAACCAAGGTCCAAGAG 58 44878179 44878197 CGGAAACTCCAGATGTAGG 57 NA Rattus norvegicus 81 Prap1 ENSRNOG00000018446 ENSRNOT00000024912 1 1 1 80 1 212561628 212561747 AAAGCATTCAGATACCATGACC 59 212561788 212561806 AGTTCTGGACCCTGAAGAG 58 NA Rattus norvegicus 81 Fbll1 ENSRNOG00000015303 ENSRNOT00000020554 2 1 1 60 10 20621353 20621371 TTTCCATCAAGGCCAACTG 58 20621311 20621329 TCTGAAGCAAACACAGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asic3 ENSRNOG00000008380 ENSRNOT00000011300 2 1 1 80 4 7289283 7289301 TTCCAAGACAGAGTCCTGG 59 7289099 7289239 CTCTTCCTGGAGCAGAGTG 60 NA Rattus norvegicus 81 Tpcr12 ENSRNOG00000048210 ENSRNOT00000072317 2 1 1 60 10 34403292 34403310 CAGGACAAAGTGGTCTCTG 58 34403332 34403352 AAATAAGAGGGTTGAGCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr103 ENSRNOG00000045842 ENSRNOT00000048299 3 1 1 60 1 168575480 168575498 CTGCACTACTCAACCATCC 58 168575522 168575540 TCAAGCCAACTACACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0077.1 ENSRNOG00000046104 ENSRNOT00000072991 1 1 1 80 9 8661679 8661698 GTGGCTAAAGTCAGGAAGGA 60 8661524 8661637 TGAAGCCTTAAACCTCTCGT 59 NA Rattus norvegicus 81 Rn60_9_0077.1 ENSRNOG00000046104 ENSRNOT00000072991 3 1 1 80 9 8661679 8661697 TGGCTAAAGTCAGGAAGGA 58 8661523 8661636 CTGAAGCCTTAAACCTCTCG 58 NA Rattus norvegicus 81 AABR07035501.1 ENSRNOG00000049220 ENSRNOT00000072986 2 1 1 69 12 18227517 18227535 GTCACTGTGGCTATTGGTG 59 18222301 18222319 ATTCTGGAGTTCCCAAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Cops6 ENSRNOG00000001346 ENSRNOT00000001820 3 1 1 80 12 19305630 19305737 CTGAAGCAGGAGAGGTTCC 60 19305780 19305799 TGCTGAGAACTGGAAGACAG 60 NA Rattus norvegicus 81 Sh2d5 ENSRNOG00000014909 ENSRNOT00000020069 2 1 1 84 5 156622505 156622523 TCAGCTGTCACAGAATGTC 58 156622571 156622711 CAGCTCCTTCCCATTACTG 58 NA Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 1 2 2 80 6 26261342 26262444 GAGTACGAAAGGGAATATCGTC 59 26259814 26259834 CTCCTTCTGCTCATTACTCTG 58 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 1 1 1 75 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123034596 123042390 TAACTGACTCCTCGACTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408,ENSRNOT00000068594 1 2 2 80 19 42856390 42911946 AAGTTGTATAAGCACCTGCA 58 42856329 42856347 GTAGTTGCACAGGACACAG 59 NA Rattus norvegicus 81 Olr541 ENSRNOG00000049276 ENSRNOT00000041127 2 1 1 60 3 74701063 74701084 CTTTCATCATTGTCATGGTGTC 58 74701024 74701042 GAACGGATTCTCAGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tet3 ENSRNOG00000011387 ENSRNOT00000015296 2 1 1 80 4 115085437 115085457 GAAGGCCCATATTACACTCAC 59 115079644 115085395 TTCTCCATACCGATCCTCC 58 NA Rattus norvegicus 81 Cdk9 ENSRNOG00000022586 ENSRNOT00000032893 3 1 1 80 3 11744551 11744571 CACGTTGTCTGAGATCAAGAG 59 11744380 11744509 CTGTGCAGGATCTTGTTCC 59 NA Rattus norvegicus 81 Cct4 ENSRNOG00000009642 ENSRNOT00000012847 3 1 1 80 14 107774920 107774938 AAAGTGATCGATCCAGCCA 59 107774982 107775381 ATCTATCGTCCCACCAAGC 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939,ENSRNOT00000087458 1 3 3 80 9 65715984 65716003 CGAGAAGGAAGAACTGAGAC 58 65712982 65715941 TGTAACTCGTGAAGCTCCA 59 NA Rattus norvegicus 81 RGD1565693 ENSRNOG00000012652 ENSRNOT00000016884 2 1 1 72 6 111570909 111570927 TTGGACAAATGTCTGCAGC 59 111570786 111570804 AAGAGTTCCAGAAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Mir6316 ENSRNOG00000049017 ENSRNOT00000075015 1 1 1 60 1 278298681 278298699 ACATGTCTGTCTCTGTGGC 60 278298721 278298741 ACAGACATGTGAAAGTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp1 ENSRNOG00000019059 ENSRNOT00000025761 1 1 1 81 19 43882378 43884776 CTTTCAGTGGAAGTGTGGA 57 43884821 43884839 TTGTAAGTGATGGTGCCTG 58 NA Rattus norvegicus 81 AABR07061382.1 ENSRNOG00000034129 ENSRNOT00000046568 3 1 1 60 4 120157414 120157433 TGACATCACTGACTTGAACC 58 120157373 120157393 TTCATCTACTTCCTTTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 1 4 5 80 9 43834355 43834373 AGTATCCAGCCAGGAAAGG 59 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 Tipinl1 ENSRNOG00000037221 ENSRNOT00000056239 2 1 1 60 5 174150 174168 ATCTCTGCTGATGGTCCAC 59 174108 174126 CCAACTGTCCTTCTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgi1 ENSRNOG00000014758 ENSRNOT00000020411 3 1 1 81 1 256956645 256975954 CTGCAGCTCTTGTTATTCAC 57 256975995 256976016 AATATTCTAGGTGTGGAAGACC 57 NA Rattus norvegicus 81 Crygb ENSRNOG00000032926 ENSRNOT00000043766 1 1 1 92 9 71798129 71798236 CGAGATGGGAAAGATCACCT 59 71798056 71798074 AAGTAGGTCTGCAGGTTGG 59 NA InUTR Rattus norvegicus 81 Spata7 ENSRNOG00000003955 ENSRNOT00000005297 1 1 1 82 6 122639841 122639860 TAACTCTGAGCTTGGGACAG 59 122639902 122642900 TTCTCATGTAATTAGGTGCCTG 58 NA Rattus norvegicus 81 Spata7 ENSRNOG00000003955 ENSRNOT00000005297 3 1 1 84 6 122639839 122639858 TTTAACTCTGAGCTTGGGAC 58 122639902 122642900 TTCTCATGTAATTAGGTGCCTG 58 NA Rattus norvegicus 81 AABR07068187.1 ENSRNOG00000048388 ENSRNOT00000074236 2 1 1 76 9 88749379 88749397 AGAGTATGCACACTGGCTG 60 88748920 88749339 GGAGGAGCACTCTGTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc7a6 ENSRNOG00000019943 ENSRNOT00000027117 1 1 1 80 19 38176481 38176992 CATTAGGAAAGTTCTGGCTACTG 59 38177030 38177050 TCAGCTACATCTAGCTCAGTC 59 NA Rattus norvegicus 81 Rab9b ENSRNOG00000047960 ENSRNOT00000074140 2 1 1 147 X 107536277 107542369 CCATTGTGTTGGAACTCGA 58 107534961 107534980 AGAGAAGGGATTTCCCACTC 59 NA InUTR Rattus norvegicus 81 Zfp518a ENSRNOG00000036592 ENSRNOT00000054717 2 1 1 162 1 260171523 260171927 CAACCTGTAATCAGGTGCA 58 260172053 260172071 CTGTGTCTGTTCAAATGGC 57 NA InUTR Rattus norvegicus 81 Ggt7 ENSRNOG00000018441 ENSRNOT00000025315 1 1 1 80 3 151012314 151012333 TCAACAGCCAGATGCTAGAC 60 151011550 151012271 GCTGTACCGAGTTCTCCAG 60 NA Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423,ENSRNOT00000080686 3 2 2 194 5 171459136 171459154 AGTACTTCGTGTTCCGACC 60 171458891 171458913 GGCTGATGAAGTCATATTTGCA 60 NA Rattus norvegicus 81 RGD1560186 ENSRNOG00000031098 ENSRNOT00000049634 3 1 1 60 13 110372245 110372263 CACCTTCAGAAGTTGACCT 57 110372285 110372305 TACACTTTCTCTTGCACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 2 2 2 80 2 197981407 197981425 CTGAAGTTCATTGCCAGGA 58 197975042 197981363 GGTGAGGATTCTGTTCAGG 58 NA Rattus norvegicus 81 Olr318 ENSRNOG00000049602 ENSRNOT00000029224 2 1 1 60 1 228225504 228225524 GGTTTACACCTTCATCACTCC 59 228225464 228225482 TTCTCTGTTCCTCATGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpp10 ENSRNOG00000002595 ENSRNOT00000003527 2 1 1 80 13 39436887 39436907 TTCATTTCCAGCATTCAGCAG 60 39434336 39436847 CATCTGGATAGACCTGCAGAG 60 NA Rattus norvegicus 81 Slc25a42 ENSRNOG00000020345 ENSRNOT00000027615 1 1 1 80 16 20981083 20981493 CCCAAGGAGATGTACAGCA 59 20981535 20981555 CCCGAAATAAAGGGTCTTCAG 59 NA Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000075324 2 1 2 102 4 55398567 55398585 CTCTGTGTCCATCATGGTG 58 55398221 55398502 TATGGTTGTCAAGATTGCCG 59 NA Rattus norvegicus 81 Sprr3 ENSRNOG00000024046 ENSRNOT00000030295 2 1 1 60 2 192642331 192642350 TACACTGTTGTTCTTGAGCC 58 192642290 192642309 TGACGTTGGTAGAACATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif19 ENSRNOG00000003105 ENSRNOT00000004141 1 1 1 80 10 103324270 103324614 CAATGCCAAGGAGATCATGC 60 103324657 103324675 GAAGTCTGATTGGCAGCTG 59 NA Rattus norvegicus 81 Ubox5 ENSRNOG00000021230 ENSRNOT00000028834 1 1 1 80 3 123140407 123141943 ATTCACTGCAACAAGGTGTC 59 123140346 123140366 GCCATGGCTTCTCTTTATGAG 59 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 2 3 3 80 11 71350983 71351156 CCCAGTATCTGAAGGTGGAG 59 71350922 71350943 CGAACATCTCTAGCACTTTGTG 60 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183,ENSRNOT00000059181 1 3 3 80 5 78504610 78504628 AGTGTGAAGCTACAGGAGG 59 78510572 78516416 GAATAAGCACTCTGCCTTCTC 59 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183,ENSRNOT00000059181 2 3 3 80 5 78504607 78504626 CAGAGTGTGAAGCTACAGGA 59 78510570 78516413 TAAGCACTCTGCCTTCTCTG 60 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000082668,ENSRNOT00000008256 3 2 2 80 10 86180024 86184294 TTTCAAGAAGGACAAAGGTGC 59 86184334 86184354 AAACCTGATTCTAGCAGTCCC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 3 4 5 80 19 43225392 43226685 GATGAGAAAGAGGACAGAGCT 59 43226725 43226745 CACTTGGTTGGTGTTATCCAC 60 NA Rattus norvegicus 81 LOC100360908 ENSRNOG00000043249 ENSRNOT00000066168 1 1 1 82 16 20464563 20466247 CTTACATGTACAGGTGTTGCT 58 20464501 20464524 GTCTGTATTGATTCTGTAGTTGGG 59 NA Rattus norvegicus 81 Megf8 ENSRNOG00000052687 ENSRNOT00000077313 2 1 1 80 1 82227199 82229569 CTGCTACAAGTACCAGTGTG 58 82229612 82229630 ATGAGTCGGTAACACTGCT 59 NA Rattus norvegicus 81 RGD1564379 ENSRNOG00000042501 ENSRNOT00000064861 3 1 1 60 3 3592645 3592664 TCGACGTGTATGTCAAGACC 60 3592604 3592623 CTGAAGTAGAGCAGAAAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slk ENSRNOG00000011339 ENSRNOT00000015495 3 1 1 80 1 267380813 267381149 CCGTGATGCTTGAACTTGAG 60 267381189 267381210 AATTCAACGCCTCTAATGTCTG 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 2 2 3 80 1 79066943 79077380 ATATCTCTACGTGTACAGCTCAC 60 79077418 79077438 GGTGGCACTGATTCAATACTG 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312,ENSRNOT00000090540 3 2 2 81 2 84528505 84528524 TGTGGCTACACAGAAGACTG 60 84526370 84528464 ATATTGTTTGTGGCTACACTGC 60 NA Rattus norvegicus 81 Zfand1 ENSRNOG00000010342 ENSRNOT00000013905 1 1 1 80 2 93665666 93665777 TAACAGCAAAGAAGCTGAGG 58 93665819 93665838 TGATCCACCTTTCCAATGTG 58 NA Rattus norvegicus 81 Actr10 ENSRNOG00000007504 ENSRNOT00000010300 3 1 1 80 6 93405694 93405714 CCTCCAAATGTCGACTATCCA 60 93405753 93407109 AATTTCCACGACTGAATCTCTG 59 NA Rattus norvegicus 81 Olr420 ENSRNOG00000007965 ENSRNOT00000010473 2 1 1 60 3 21016791 21016813 CATTTCTTCTGTGACCTCTATCC 59 21016833 21016851 TGTTGAGTTCAATGCTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657,ENSRNOT00000039273 2 2 2 83 19 55223106 55225349 AGAGACACGACACTTGAGC 60 55225395 55225414 ATTCTCGTACTGTCCACCAC 60 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 3 2 2 183 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885041 171885059 TCAAAGCTGAAATGCCGAG 59 NA Rattus norvegicus 81 Mir216b ENSRNOG00000036371 ENSRNOT00000054490 3 1 1 63 14 113101108 113101126 GGCAAATGTGATGTCACTG 57 113101150 113101171 TGTTGTCAGACTGAAGAATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000089899,ENSRNOT00000088239 1 4 7 82 9 43743204 43743224 CAAGCCATCAGATCCTATGAG 58 43749935 43751263 GCATCCAACTTCTCTTTCTCC 59 NA Rattus norvegicus 81 Rn60_18_0146.1 ENSRNOG00000029958 ENSRNOT00000051543 2 1 1 60 18 14732083 14732101 CACAGTAGCCAGAGTTCAC 58 14732125 14732143 ATTCTGCAGTTTGGTTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Desi1 ENSRNOG00000005577 ENSRNOT00000007424 3 1 1 91 7 123259404 123259422 TCTACGTGTACGACCTGTC 59 123247545 123248749 TATAGAGGTATGCCAGATTCCT 58 NA Rattus norvegicus 81 Faslg ENSRNOG00000002978 ENSRNOT00000003998 3 1 1 130 13 79705391 79705410 AACATAGAGCTGTGGCTACC 60 79704594 79705298 CTGTGGTTGGTGAACTCAC 59 NA Rattus norvegicus 81 AABR07019102.1 ENSRNOG00000032106 ENSRNOT00000051173 1 1 1 80 15 89348089 89348110 TTGGCTATGATGTTGAAGACC 58 89348029 89348048 GTCTCATTACGCATGATCCA 58 NA Rattus norvegicus 81 Mrgprx3 ENSRNOG00000014227 ENSRNOT00000019051 1 1 1 60 1 103299380 103323416 GAAAGCTTCACCGGTACAG 59 103299338 103299356 TGACTGCTATTGTCGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Ivd ENSRNOG00000009421 ENSRNOT00000013829 1 1 1 80 3 110683748 110683766 TGGACAAGCTAGGCATGAG 60 110683810 110685393 TCAGGATGTTAGCAGCAGG 60 NA Rattus norvegicus 81 Cers4 ENSRNOG00000001072 ENSRNOT00000001418 1 1 1 80 12 4445228 4445942 AGAATTACCCACATCAGACCC 60 4445168 4445189 TTAGCAGTGAAATGTAGAAGCC 59 NA Rattus norvegicus 81 Il17ra ENSRNOG00000011153 ENSRNOT00000014885 2 1 1 80 4 153013177 153013196 TTATCTGCATGACCTGGAGG 59 153014785 153015754 TTGGCAAGATGCCATTGAC 59 NA Rattus norvegicus 81 Lrsam1 ENSRNOG00000022312 ENSRNOT00000060186 1 1 1 80 3 11986901 11986919 GGTTCCAGCAGATTCTGTC 58 11982465 11986857 TCTGCATCACACTCTCCTG 59 NA Rattus norvegicus 81 Hddc3 ENSRNOG00000012236 ENSRNOT00000016445 2 1 1 131 1 142137156 142137174 AAACTGGAAAGAAAGCGGC 59 142137269 142137594 TTCTGACCAGCCTTTAGGG 59 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000043851,ENSRNOT00000035722,ENSRNOT00000046192 3 4 4 80 4 85682356 85682376 CTCAAGTAGGTGAGATGGTCC 60 85682416 85684390 TTTCTGTCATCCAGACTTGGT 59 NA Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 1 2 2 80 1 257942714 257943249 ATGACAGTGATTGGAATCCTC 58 257943291 257943309 CAACAACTGGCTTTGTCTG 58 NA Rattus norvegicus 81 Gpr87 ENSRNOG00000013894 ENSRNOT00000018573 1 1 1 87 2 149404556 149404576 ACATCACAACTAGAGAATGGG 58 149400036 149400054 GTTTGCAGTGTGACTTGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cass4 ENSRNOG00000021560 ENSRNOT00000035245 2 1 1 119 3 170432964 170432982 AAGAGAAGCTGAGTCCCAC 59 170433065 170434385 TTAGGTGACTTCTGCCCAC 59 NA Rattus norvegicus 81 Cdh12 ENSRNOG00000026392 ENSRNOT00000034044 3 1 1 80 2 72379235 72379253 TGCCAGAGTTGTTTACAGC 58 72379294 72387503 AATGCTGTTCTAATGACACCTG 59 NA Rattus norvegicus 81 Stard5 ENSRNOG00000025052 ENSRNOT00000015320 1 1 1 80 1 145774999 145775973 CCATCAGTTCCAATGCTACC 59 145776013 145776034 ATGGATGGTTAAATCCTCTCAC 58 NA Rattus norvegicus 81 Exoc5 ENSRNOG00000013804 ENSRNOT00000067735 2 1 1 80 15 25892106 25894035 GCCACTAATAAGCTCTTCTCC 58 25892046 25892065 AACTTCATCTCCATCTGCTC 57 NA Rattus norvegicus 81 LOC100910401 ENSRNOG00000047637 ENSRNOT00000075276 3 1 1 80 15 47457076 47457819 CCCATGGCAAATTAGAACTGG 60 47457861 47457879 TCTCCAAGTTGATGTCGCT 59 NA Rattus norvegicus 81 Rufy2 ENSRNOG00000000390 ENSRNOT00000037409 2 1 1 80 20 27237600 27238195 AACAGACAACTCAACAGCAC 59 27237539 27237560 TTCGATCAGCTTAGTGTTTGAC 59 NA Rattus norvegicus 81 Sumo1 ENSRNOG00000016133 ENSRNOT00000022047 1 1 1 80 9 66460523 66470230 TCAAAGTTATTGGACAGGACAG 58 66460464 66460485 ACGATTCTTTGAGCTTCTTGAG 59 NA Rattus norvegicus 81 RGD1304770 ENSRNOG00000042918 ENSRNOT00000066856 3 1 1 86 20 45020692 45020710 TCCTTTGTGCAAGAAGGTG 58 45017631 45020643 ACATTTGCACCTGTATCCAC 59 NA Rattus norvegicus 81 Zc3h13 ENSRNOG00000011237 ENSRNOT00000015467 2 1 1 80 15 57385926 57388876 CAGAGAACGAGATCAAAGACC 59 57388918 57388936 TCTCTTCTTTCCTCTCGCT 58 NA Rattus norvegicus 81 Igdcc3 ENSRNOG00000030800 ENSRNOT00000051353 2 1 1 80 8 70676531 70676903 GATGATGAGAGGTACACATTACTG 59 70676942 70676960 ATGGAAGACACCGCTATCC 59 NA Rattus norvegicus 81 Cdk5r1 ENSRNOG00000021685 ENSRNOT00000031746 2 1 1 60 10 67863052 67863070 GCTGCAGATCAATGCTGAC 60 67863089 67863112 CTCATTCTTCAAGTCAGAGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830,ENSRNOT00000067665 3 2 2 80 10 84991720 84991740 TCCACTCACTCTCCATATCCT 60 84991781 84992874 TGTACAGAGCTTCTTGCTCC 60 NA Rattus norvegicus 81 Glg1 ENSRNOG00000018668 ENSRNOT00000025570 1 1 1 80 19 43069673 43069693 ATCTGGATGACTTAGCTGTGG 60 43069729 43070953 CTTCTATTTGTATGTCCTCAGACTC 59 NA Rattus norvegicus 81 Olr649 ENSRNOG00000054715 ENSRNOT00000078540 3 1 1 60 3 77073082 77073100 AAGCAGTCATCAGAAGGGA 58 77073123 77073142 CAACAGCAATGTGAGATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn21 ENSRNOG00000060568 ENSRNOT00000079697 3 1 1 80 6 122689221 122699248 ATCACCAGGTACCAGTATTACC 59 122689162 122689180 AATGGCTTGCTCCAATGTG 59 NA Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 3 2 2 80 8 13865013 13865031 GACTTTGACAGCCGTAGAC 58 13865075 13865404 TTCATCTTCAGTTGACGGC 58 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000087633,ENSRNOT00000032518 3 2 2 83 11 71004185 71004204 GCAGAACGAGTTAAATGCTC 58 71004250 71005180 TACTCCCGGATCATCTTCG 58 NA Rattus norvegicus 81 Tbl2 ENSRNOG00000046252 ENSRNOT00000075138 1 1 1 97 12 24574064 24574082 AAAGATTTCCTTCAGCGGG 58 24571594 24574003 TGAATTTCCCTGCAGTCAG 58 NA Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374,ENSRNOT00000088018 2 2 2 80 4 99410037 99413191 CCAGTGATCCCAGGTACTG 59 99413234 99413253 TAGATGTGCTTGTTTGTGGG 59 NA Rattus norvegicus 81 Nfatc2ip ENSRNOG00000057384 ENSRNOT00000090200 3 1 1 80 1 197799763 197800462 TCTGGAAAGGTACAGAGCAG 59 197799702 197799720 ATCTTCAGGCTCTGAGGGA 60 NA Rattus norvegicus 81 LOC500034 ENSRNOG00000007224 ENSRNOT00000009752 2 1 1 97 4 40092913 40121954 GAATGGTGTTGTAGTGTATGCA 59 40092837 40092855 GTCTTAGTGGCGAGGACAG 60 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000012422 2 1 2 81 2 166655621 166681792 AAAGGCAGACTTTCCACAG 58 166655558 166655577 ATTGATAGTAGAGCCAGGCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000012422 3 1 2 82 2 166655621 166681792 AAAGGCAGACTTTCCACAG 58 166655557 166655577 TATTGATAGTAGAGCCAGGCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cndp2 ENSRNOG00000015591 ENSRNOT00000021400 2 1 1 80 18 81525716 81525739 CACATTGACTTCGATATGGAAGAG 60 81524829 81525678 CAGGATGTCTTTCTTGCAGC 60 NA Rattus norvegicus 81 Tnfrsf13c ENSRNOG00000007664 ENSRNOT00000056037 2 1 1 85 7 123455139 123455627 AAGGAGTCCAGCAAGAGTC 59 123455072 123455090 GAATGGAGGCCAGTTAGGA 59 NA Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 2 2 2 80 7 76093045 76096821 TCTATGACTACTACAAGGTTCCTC 59 76096860 76096878 TTTCCTCGTCTTCTTGGCT 59 NA Rattus norvegicus 81 Tmem207 ENSRNOG00000048672 ENSRNOT00000074688 3 1 1 82 11 77654669 77654687 AAAGCTGTGGAACTGATCG 58 77654732 77663704 CATTTCTGCACCATAAACGG 58 NA Rattus norvegicus 81 RGD1560065 ENSRNOG00000014857 ENSRNOT00000019964 1 1 1 80 2 251818097 251818115 CTTCCTCTACAACCCGCTC 60 251818158 251819020 AATTCCTTTGGAGGCTCCTC 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 1 3 3 80 X 128443670 128444870 GGGAATCTGTGGTAAGAACTG 59 128446753 128446773 CCATAGGATTCTGGAAGATGG 58 NA Rattus norvegicus 81 Vcsa2 ENSRNOG00000001945 ENSRNOT00000002667 1 1 1 80 14 21559007 21612303 TCTTATAGTATGCTTCCCGTCAG 60 21558949 21558971 GAAAGATCTTGTGGTCTTCTAGG 59 NA Rattus norvegicus 81 Kctd3 ENSRNOG00000002627 ENSRNOT00000003556 1 1 1 80 13 107460637 107461242 CTATTAGGCTGGGAGTCCC 59 107460575 107460594 CATAGGCAGCTACAATCCAG 58 NA Rattus norvegicus 81 Izumo1r ENSRNOG00000019894 ENSRNOT00000051471 1 1 1 92 8 13418193 13418766 TCTACTTTGAGTGCATGCC 58 13418119 13418137 AGTTAAAGAGCAAGGGCTC 58 NA Rattus norvegicus 81 Etv3l ENSRNOG00000043511 ENSRNOT00000057490 2 1 1 91 2 186905558 186905576 ATCCAGATGAAGTGGCTCG 60 186905630 186905857 GTAGTAATACCTGAGGGCCC 59 NA Rattus norvegicus 81 Galr1 ENSRNOG00000016654 ENSRNOT00000022401 3 1 1 88 18 79257743 79257761 CAAGAAGGCTTACGTGGTG 59 79252290 79257693 GATTGAGAACCTTGGCATAGC 60 NA Rattus norvegicus 81 Cyp51 ENSRNOG00000007234 ENSRNOT00000009985 1 1 1 80 4 27184506 27188217 TATGAGCAGTTGAAGGATCTG 58 27188258 27188277 CATGGTCATTATAGGAGGCC 58 NA Rattus norvegicus 81 Fbln2 ENSRNOG00000007338 ENSRNOT00000009696 1 1 1 80 4 122892667 122894220 CTCAGAAACGAAGTGCGAG 59 122894264 122894282 TGGTAGTGCGTGATACGAG 59 NA Rattus norvegicus 81 Fbln2 ENSRNOG00000007338 ENSRNOT00000009696 3 1 1 80 4 122890922 122890942 CATCTACGGCTCCTATCAGTG 60 122890984 122891401 TCATCGATGTCTGTGCAGG 60 NA Rattus norvegicus 81 Aldh3b2 ENSRNOG00000017872 ENSRNOT00000024034 2 1 1 80 1 219202423 219202442 GATTGAGTTCATCAACCGGA 58 219202484 219205080 AACACCTGTTTGATGACCTC 58 NA Rattus norvegicus 81 Sorcs3 ENSRNOG00000028832 ENSRNOT00000065001 1 1 1 80 1 268601798 268604761 GATTGCTGTACACGAATACTTCC 60 268604799 268604819 TCAGGGATATCAGGATTGTGG 59 NA Rattus norvegicus 81 Mtfr1 ENSRNOG00000021359 ENSRNOT00000045586 2 1 1 80 2 104037310 104037329 GCTTGACATGCCAAATATGC 59 104037369 104038210 TCTTTCTCTGACCTCTTGACTG 60 NA Rattus norvegicus 81 Mtfr1 ENSRNOG00000021359 ENSRNOT00000045586 3 1 1 81 2 104037367 104038205 GCCAGTCAAGAGGTCAGAG 60 104038250 104038268 CAGAGCCTCTGCTATGAGG 59 NA Rattus norvegicus 81 Lmx1b ENSRNOG00000017019 ENSRNOT00000022953 3 1 1 80 3 12614382 12614401 CAAGGGTGACTACGAGAAGG 60 12612376 12614341 TCATCCTCACTCTTCACAGAG 59 NA Rattus norvegicus 81 Atp5g3 ENSRNOG00000001596 ENSRNOT00000058234 3 1 1 80 3 60812475 60812495 ATCCAGAGTTGCATATAGACC 57 60812089 60812433 AATACCGTAGAGCCCTCTC 58 NA Rattus norvegicus 81 Lama4 ENSRNOG00000000599 ENSRNOT00000000737 2 1 1 80 20 44182386 44183419 GCCTACTTTACCAGGTTGGA 60 44183461 44183480 ATAGAGTGAAGTGTGCACCT 59 NA Rattus norvegicus 81 Rrnad1 ENSRNOG00000011645 ENSRNOT00000015793 1 1 1 84 2 187296998 187297016 CTAGTAGCGAGAGCTCAGC 60 187296315 187296950 TTTGCACCATCTTTGGGTG 59 NA Rattus norvegicus 81 Slitrk6 ENSRNOG00000022337 ENSRNOT00000038433 2 1 1 90 15 95511358 95513748 TCTGCTTTACAGACACGGA 59 95511286 95511309 GTAGAGATAGACAAGCAAGAAGAG 59 NA InUTR Rattus norvegicus 81 Mss51 ENSRNOG00000007632 ENSRNOT00000010178 2 1 1 80 15 4248293 4248565 GCTATGAAGAGTACAAGTTGGTG 60 4248602 4248623 GGAACATTTCTTGTTGACATCG 59 NA Rattus norvegicus 81 Uck1 ENSRNOG00000011467 ENSRNOT00000015792 2 1 1 80 3 11276056 11276221 ACCCACTCAAGGTTACCAG 59 11275994 11276014 GGTGTAGAATACCAAGATGCC 59 NA Rattus norvegicus 81 LOC100361240 ENSRNOG00000049099 ENSRNOT00000047113 2 1 1 60 15 19429702 19429722 ACATTTCTACTGGTACCTCAC 57 19429744 19429762 TAGGTGCAGGTAATCTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn5 ENSRNOG00000007038 ENSRNOT00000009418 3 1 1 80 8 8130302 8173013 TTCGAAATGATGGTGTAATGGG 59 8130243 8130261 TTCCCTTAGCAGCTGTGAC 60 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000085170 2 1 3 83 X 123988492 123988512 AGGAATCACTATCTCAGTGCT 58 123888234 123963879 AAACCATCTCTGCACTTTGG 59 NA Rattus norvegicus 81 Timm13 ENSRNOG00000019682 ENSRNOT00000026648 1 1 1 82 7 11677570 11677589 GATGACGGACAAGTGTTTCC 59 11677634 11677877 ACATGGCGATGCATTTCTG 59 NA Rattus norvegicus 81 Pih1d3 ENSRNOG00000054900 ENSRNOT00000087634 1 1 1 80 X 111400750 111402807 AAGAGTCCAAAGCCATTCCT 59 111402850 111402868 CTGCTCCTTCTGGAACCTC 60 NA Rattus norvegicus 81 Tnmd ENSRNOG00000060970 ENSRNOT00000083229 2 1 1 80 X 104684929 104685115 CACATTCTAAATGCAGAAGCTC 58 104685154 104685174 CAGGATACCAAACACTAGTCC 58 NA Rattus norvegicus 81 LOC680910 ENSRNOG00000048881 ENSRNOT00000074057 1 1 1 100 12 20483173 20485361 CATCATTCATGCTCTCAATACTACC 60 20483097 20483115 AAGGATTCCTCTGGTCCCT 60 NA Rattus norvegicus 81 LOC680910 ENSRNOG00000048881 ENSRNOT00000074057 2 1 1 101 12 20483173 20485361 CATCATTCATGCTCTCAATACTACC 60 20483096 20483114 GAAGGATTCCTCTGGTCCC 59 NA Rattus norvegicus 81 Sccpdh ENSRNOG00000046051 ENSRNOT00000057787 3 1 1 80 13 97704427 97704448 GATATCAGTAATCCAGCCTCAC 58 97704488 97709843 AAATCGATAAGGTCCTACGC 58 NA Rattus norvegicus 81 Ptprz1 ENSRNOG00000006030 ENSRNOT00000008719 1 1 1 80 4 50124689 50129732 GAAACAATTCCAGCTTCTGAG 58 50129774 50129792 TTCTCCCTGTTACACTGCT 58 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000064138 3 1 2 218 1 215135700 215136095 TCTGTTCCTGCTCTAGCTG 59 215143863 215143882 CACAACCTGAAGAGCAACAG 60 NA DesignNoJunction Rattus norvegicus 81 Fam105a ENSRNOG00000012109 ENSRNOT00000067638 1 1 1 80 2 80391259 80391277 TCTCTTCTGTCAGCTACCC 58 80391114 80391217 ATAGCCAATCCACCATTTCAG 59 NA Rattus norvegicus 81 Fam105a ENSRNOG00000012109 ENSRNOT00000067638 3 1 1 80 2 80384092 80384111 GACTTTGCAGTCTACTACCC 58 80384028 80384049 AATGTGGTACTGGTCATTCTC 58 NA Rattus norvegicus 81 Igip ENSRNOG00000049067 ENSRNOT00000073131 2 1 1 60 18 29124482 29124503 ATATTTGCTGTCATGTTCTCCC 59 29124524 29124542 TTGCTTGGTTTCCACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spry2 ENSRNOG00000010058 ENSRNOT00000013342 2 1 1 178 15 90174611 90175647 TGCTGTTGGAGGAGTTCAG 60 90174451 90174469 ATGTACCTGCTGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496,ENSRNOT00000067070 1 2 2 80 1 15535249 15535269 CTGTCGATCAACAATGAAGTC 57 15535309 15545027 CTCATGGATACCCTTCTTGTC 58 NA Rattus norvegicus 81 Tmprss6 ENSRNOG00000000184 ENSRNOT00000000200 2 1 1 80 7 119679921 119680630 AAGCCCAGAAGATGTTCCA 59 119679859 119679878 CAAAGGCGTAGATGGAACTG 59 NA Rattus norvegicus 81 Pop7 ENSRNOG00000025310 ENSRNOT00000001913 1 1 1 90 12 22259897 22260115 GGGAAGAAGGACTTAGAGCA 59 22260168 22260186 TTTCCGAAGGGTGTACTCC 59 NA InUTR Rattus norvegicus 81 Olr1457 ENSRNOG00000050914 ENSRNOT00000042919 3 1 1 60 10 44750033 44750054 ATATTGTCATGCGTTAGTGGTC 59 44749994 44750013 ATGGAAGGCTGAGTAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000058750 ENSRNOT00000079546 3 1 1 90 12 30223367 30227086 ATTACTTGGCATGACAGCC 58 30223295 30223313 GTAGGCCAGGTACAAAGAC 58 NA Rattus norvegicus 81 Cdk2ap1 ENSRNOG00000001070 ENSRNOT00000001419 3 1 1 90 12 37672703 37672721 CTACTAGCATGGCGACCTC 60 37672774 37674164 CTATTTCCAGTTCCCTGGGT 59 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236,ENSRNOT00000071818 1 2 2 80 7 115034617 115035324 GTGTCTGATGACACTGATGGA 60 115034557 115034575 GAGACAATGCGGATGACCT 60 NA Rattus norvegicus 81 Lasp1 ENSRNOG00000004132 ENSRNOT00000005522 2 1 1 91 10 85744808 85752115 CTGGATAAGTTCTGGCATAAAGC 60 85752166 85752184 GGCTTCTTCTCGTAACCCT 59 NA Rattus norvegicus 81 Ovol3 ENSRNOG00000024880 ENSRNOT00000041301 2 1 1 80 1 91039962 91039981 TGCCACTATTGTGGTAAAGG 58 91040024 91040923 GAATGGCCGTATTCCAGTG 59 NA Rattus norvegicus 81 Card14 ENSRNOG00000047367 ENSRNOT00000070842 1 1 1 80 10 108446583 108446601 AGGAGAGGAACTGAATCGG 59 108446644 108447971 AGAATGTCCTTCTCCACCAG 59 NA Rattus norvegicus 81 Pibf1 ENSRNOG00000009208 ENSRNOT00000036350 3 1 1 80 15 83608864 83627135 AGCTTTCTCAAGAGCTTGAC 58 83627174 83627196 TCACAGACTCTATGAGGTATCTG 59 NA Rattus norvegicus 81 Prcc ENSRNOG00000012933 ENSRNOT00000017735 3 1 1 80 2 187236150 187240719 GATGAAGCATTTAAGCGGC 58 187236088 187236108 GTCATCACCTTTGATCTCCAC 59 NA Rattus norvegicus 81 Rhox3 ENSRNOG00000040010 ENSRNOT00000041904 1 1 1 80 X 124575549 124575567 GCTTCCTCAGTGTAGAAGC 58 124572152 124573499 TCCGAAACCATCTCTTCAC 57 NA Rattus norvegicus 81 Tm4sf20 ENSRNOG00000015460 ENSRNOT00000020880 1 1 1 80 9 88524546 88524567 ACCTCTAGTTTGTAACACTCAG 58 88522268 88524507 TCAGGACGAAAGTTACTTAGG 57 NA Rattus norvegicus 81 AABR07000550.1 ENSRNOG00000046617 ENSRNOT00000075461 1 1 1 85 1 17602368 17602386 AACGAAGACTGGTGGTACG 60 17602435 17605526 CGGTACAGTGTCTCACTGG 60 NA Rattus norvegicus 81 LOC100911372 ENSRNOG00000007663 ENSRNOT00000010383 3 1 1 81 5 105212093 105212113 AAGCTTCGTACGTTCTATGAG 58 105211689 105212050 CCACATAACCCTTCCACTC 58 NA Rattus norvegicus 81 RGD1564955 ENSRNOG00000024068 ENSRNOT00000033044 3 1 1 80 X 135732636 135733432 TGGAAGCAATAACACCTCC 57 135732574 135732594 TGGATTCCAGAGATTCTTGAG 57 NA Rattus norvegicus 81 Fah ENSRNOG00000013223 ENSRNOT00000068167 2 1 1 80 1 146721627 146723565 GTTGCTTTGAAAGGAGAAGGA 59 146718835 146718855 CAGAATGGTCCAGTACATGTG 59 NA Rattus norvegicus 81 Agpat2 ENSRNOG00000019466 ENSRNOT00000026408 2 1 1 80 3 4047655 4048360 CATCCTAGACATGATGGGTCTC 60 4047596 4047615 CCTGTGAACATTAGCTCACG 59 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000085901 3 1 3 98 9 81562790 81563017 GTCCTCCCTGATGGAAAGAG 60 81562711 81562731 ACCTTTCAGTACATGGATGGG 60 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354,ENSRNOT00000090267 2 2 3 60 9 81563431 81563450 GAGACCAAGGAAGAAGTCTG 58 81563390 81563408 ACTCCAAGGATCTCACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csf2rb ENSRNOG00000000187 ENSRNOT00000000203 1 1 1 80 7 119565576 119565594 TCCTCATCCTGGTCTTCCT 59 119565637 119565858 TTCTGTACAACTTGCACCCA 60 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 3 2 2 80 12 47957901 47958009 CCTGTTCAAGACAACCAGTG 59 47957840 47957859 AAGAGCTGCAGGTAGTTCTC 60 NA Rattus norvegicus 81 Rep15 ENSRNOG00000001840 ENSRNOT00000002518 2 1 1 60 4 181429213 181429234 CAGATTCGATAAGCTGGAAGAG 59 181429254 181429273 AAACAGACCTAGACAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1248 ENSRNOG00000050945 ENSRNOT00000075645 1 1 1 60 4 1626523 1626543 TTATGTACCTAAAGCCCTCCT 58 1626564 1626583 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpgds ENSRNOG00000006583 ENSRNOT00000008826 1 1 1 80 4 95949585 95949603 TCAAGCACCTCATCTTCTG 57 95946391 95949542 GCCCAAGTTACATAATTGCC 58 NA Rattus norvegicus 81 LOC501618 ENSRNOG00000037711 ENSRNOT00000057217 3 1 1 80 X 105428005 105428248 GAAATAATATGGCTGGAGGCC 59 105428294 105428312 GTCCTTGCAGTGGAATGTG 59 NA Rattus norvegicus 81 LOC687298 ENSRNOG00000032482 ENSRNOT00000047732 1 1 1 60 10 2229228 2229246 AGATCTACGGAGGACAGCA 60 2229186 2229205 TTAGAGCCTCTGCTGAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 1 3 3 80 6 127611491 127612384 TAAACAGGCAAACAAGGTCAG 59 127611431 127611454 TCAGGAGTGTCTTCAAGTTATAGG 60 NA Rattus norvegicus 81 Tnfsf10 ENSRNOG00000013269 ENSRNOT00000017758 1 1 1 80 2 113023080 113024116 CTTAATTCCAATCTCCAAGGATGG 60 113024155 113024173 AATGAATGCCCTCTCCGAG 60 NA Rattus norvegicus 81 Mn1 ENSRNOG00000027489 ENSRNOT00000029508 3 1 1 82 12 51214357 51246502 CAACAAAGAAGTTCATGACCAC 59 51214296 51214314 AGTGGACAGTCAGACACTG 59 NA Rattus norvegicus 81 AABR07036649.2 ENSRNOG00000058250 ENSRNOT00000075791 1 1 1 104 12 52649788 52652110 AGTCCAGGATATCATTTGAGG 57 52649704 52649723 TCTCCAACATCACATCTCTG 57 NA Rattus norvegicus 81 Lcn4 ENSRNOG00000030708 ENSRNOT00000046109 2 1 1 80 3 5168346 5168595 GGCACACTCTTATATCTGAGG 58 5168637 5168655 AACTGTATTGACCAGGCTC 57 NA Rattus norvegicus 81 AABR07051260.1 ENSRNOG00000026208 ENSRNOT00000035050 3 1 1 81 3 4285467 4285995 CAGAAGACAGGAATGTCTCAG 58 4286036 4286056 TCCATTGAGATTAACTCTGGG 57 NA Rattus norvegicus 81 Usp22 ENSRNOG00000032492 ENSRNOT00000050061 1 1 1 80 10 47447078 47447097 CTTCTTTGGCTGTTTCACGA 59 47445525 47447036 TACATCAGGTCAATGGCCAG 60 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 3 2 2 81 10 61706682 61707879 CCTCATCCAGATCTTGGACTC 60 61706621 61706643 GCGATAACAGAAATAGAAGTGGG 60 NA Rattus norvegicus 81 Prrg4 ENSRNOG00000022710 ENSRNOT00000038464 1 1 1 83 3 94785102 94794918 TATCCGAGTTCTTCAGCCA 58 94785037 94785055 CAAGACAGTTTCCTCAGGG 58 NA Rattus norvegicus 81 Prrg4 ENSRNOG00000022710 ENSRNOT00000038464 2 1 1 84 3 94785102 94794919 ATATCCGAGTTCTTCAGCCA 59 94785037 94785055 CAAGACAGTTTCCTCAGGG 58 NA Rattus norvegicus 81 LOC100360432 ENSRNOG00000046176 ENSRNOT00000073201 3 1 1 62 3 152226199 152226220 TTCCACATTTCCTATCTCTTGC 59 152226241 152226261 TCAAGGTGGTTGATGTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pan3 ENSRNOG00000000942 ENSRNOT00000044134 3 1 1 81 12 9238412 9238432 TCATGTTGCTTACATGCAACC 60 9237100 9238370 TCTGTTGATCAGCTCCTGTC 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000089229,ENSRNOT00000037115 2 3 3 80 2 174323433 174330977 AGGAGAGGAAGAGGTTCAG 58 174323371 174323390 TCACCATAAGTCTCTTCAGC 57 NA Rattus norvegicus 81 AABR07000658.1 ENSRNOG00000055111 ENSRNOT00000086275 1 1 1 80 1 21145672 21145693 CGCTGTCAAGAACTATGCC 59 21145610 21145630 AGGTCTTTGATGGTTCTGGAG 60 NA Rattus norvegicus 81 Mospd3 ENSRNOG00000001396 ENSRNOT00000001890 1 1 1 80 12 22166049 22166068 CAGCACCTGCCAAATATACG 60 22166111 22166296 CGTGCCGTATCACAATGTC 59 NA Rattus norvegicus 81 Sdhaf2 ENSRNOG00000020646 ENSRNOT00000028028 3 1 1 88 1 226566439 226566536 TTCTCCTGAGCCTCTTTGC 60 226566369 226566389 GCTAGGCTCATTAATCAGACG 59 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892,ENSRNOT00000082669 2 2 2 101 17 76399818 76401198 CTTTCAGAGGAGTTGATCTCAG 58 76394928 76394946 AAGCTTCACTGTTTCCCAG 58 NA Rattus norvegicus 81 Hpse2 ENSRNOG00000043120 ENSRNOT00000067274 3 1 1 115 1 262023553 262040798 CTAAAGTCCAAGTCAGTGCAG 59 262023458 262023476 GGAGGGATGACCAATGTCC 60 NA Rattus norvegicus 81 Rnf186 ENSRNOG00000017244 ENSRNOT00000023358 2 1 1 60 5 157417521 157417539 GTAGTGAGTGTCAACCGTG 58 157417563 157417581 GAGCCAACAAGAGCAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf8 ENSRNOG00000017869 ENSRNOT00000024069 3 1 1 85 19 54332389 54332407 AAGGGTAGACCCAACAAGC 60 54332456 54334314 TAGAACTGCTGCAGGTCTC 59 NA Rattus norvegicus 81 Tbx1 ENSRNOG00000001892 ENSRNOT00000002597 2 1 1 80 11 86558445 86558465 TGAAGCAGATCGTATCTTTCG 58 86558504 86559073 TGGAGTTAAGAATAATGTGGCC 59 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 3 2 2 80 3 3845412 3845432 AAGTTTGACATTGGGAAGGAC 59 3844831 3845373 TTTGTATAGGACTCGGTCTGTG 60 NA Rattus norvegicus 81 LOC498308 ENSRNOG00000032812 ENSRNOT00000048200 3 1 1 80 13 108455538 108455561 GACAAACTCCAAATCTACTTCCTG 60 108454928 108455502 CTTATCTTGCGAGGAGATAAGC 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601,ENSRNOT00000010739 3 2 2 82 6 126647157 126647175 CTGACAAGGAGGTGAAAGC 59 126647217 126647837 CTTAAATACTGTCTGGAGGTGAG 58 NA Rattus norvegicus 81 Ganc ENSRNOG00000024563 ENSRNOT00000011369 3 1 1 80 3 112206496 112210073 AAAGTATGGTGCAGTGTGG 58 112210114 112210135 AGGGTAAGTAACATAGGGATGG 59 NA Rattus norvegicus 81 Nyap1 ENSRNOG00000050511 ENSRNOT00000059602 2 1 1 88 12 21773013 21773031 ATCCACCATGATCGAGGAG 59 21773082 21773847 CCTGTGAAATCTCCATTCCG 59 NA Rattus norvegicus 81 AABR07060190.1 ENSRNOG00000030979 ENSRNOT00000051232 3 1 1 60 4 61502380 61502398 GCTAAAGCATCAGCCTGTG 59 61502338 61502358 TTCCTTTCCGTTAGTCCTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163,ENSRNOT00000065644 2 2 2 80 15 3965121 3965768 CCTACGATTTCCCATCACC 58 3965810 3965830 GGTTTATGGTCAACATCTGGT 58 NA Rattus norvegicus 81 LOC100909736 ENSRNOG00000046241 ENSRNOT00000074921 1 1 1 60 3 158920224 158920242 CTTCAACTCTCCTGCACCA 60 158920182 158920203 TGCCTATAACAACAAAGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065420.1 ENSRNOG00000055661 ENSRNOT00000086287 3 1 1 80 6 127842275 127842296 GAAGCTCAAAGCACAGGAG 59 127842339 127842358 TGGGTGACAATCTCTGTGTC 60 NA Rattus norvegicus 81 Chtf18 ENSRNOG00000019174 ENSRNOT00000026139 1 1 1 80 10 15096304 15096892 CTGCTCAGTGATGACTTTACC 59 15096244 15096262 CCTCTCATGACCAAACACC 58 NA Rattus norvegicus 81 Agps ENSRNOG00000001547 ENSRNOT00000002111 2 1 1 80 3 62675253 62681508 TCACAAATGAACCGGATTCTC 59 62681547 62681568 CAAATCTTGTCCTGTTATCCCA 59 NA Rattus norvegicus 81 Ssx2 ENSRNOG00000049427 ENSRNOT00000071047 3 1 1 80 X 709351 709821 GCATGTAAGGCATTCGAGG 59 709863 709883 TGTGATCTTCTCTGAATGGCT 59 NA Rattus norvegicus 81 Clk1 ENSRNOG00000025768 ENSRNOT00000030934 1 1 1 80 9 65297749 65297770 GGGAACATTTAGCAATGATGGA 59 65297561 65297708 AGTATGTGCGTTTCCTGGT 59 NA Rattus norvegicus 81 Cwc22 ENSRNOG00000012651 ENSRNOT00000037684 3 1 1 80 3 64758446 64758466 CAGATTGGAGAACTGATCCTC 58 64758103 64758404 CAGGCAAAGTTGCTTATCG 57 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000067585 3 1 2 82 9 9935917 9935936 ATAGTGGCTTCCCTACAGGA 60 9935754 9935872 TCCTCAAGGATCTGGACCT 59 NA Rattus norvegicus 81 Ccdc181 ENSRNOG00000002860 ENSRNOT00000003844 2 1 1 80 13 82587150 82587168 GAGCTGAGAAAGCAAGAGG 58 82587211 82588312 TCTGAGCCATTGTCTAAAGG 57 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 3 3 3 80 6 129631682 129632371 AAGAAGCCTTAATGGTTGCAG 59 129632409 129632431 CTCAGAGTTAACCTGAAGTTGTC 59 NA Rattus norvegicus 81 Actr6 ENSRNOG00000007875 ENSRNOT00000010414 2 1 1 80 7 30397841 30397861 GACCTTAGTTCTGGATAACGG 58 30394037 30397801 TGACAATTGGGAATAACCGAG 58 NA Rattus norvegicus 81 AABR07055527.1 ENSRNOG00000039997 ENSRNOT00000061482 2 1 1 97 7 4951956 4951976 CCCAATTAAAGTAACACTGGC 58 4952034 4952147 CTAACAGTTGACCACAGGTG 59 NA Rattus norvegicus 81 Ribc2 ENSRNOG00000033502 ENSRNOT00000042412 1 1 1 80 7 126035019 126038772 CAACAAGAAACAGGTTGTGG 58 126038814 126038833 ATCTCGCTCATGTTATCCTC 57 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350,ENSRNOT00000067650,ENSRNOT00000077242 1 3 3 80 14 33113726 33117596 GATTTCCTACAGGGAAATCAATCAG 60 33117630 33117652 GTCCAAGGAAGAAATATGAACGG 60 NA Rattus norvegicus 81 Ap3b2 ENSRNOG00000019249 ENSRNOT00000026030 1 1 1 80 1 143306552 143306887 ACATAGAGGTGAAGAAGCTG 57 143306491 143306510 AGATGGACAGTAGAGCTAGG 58 NA Rattus norvegicus 81 Mir411 ENSRNOG00000035574 ENSRNOT00000053697 1 1 1 60 6 133858870 133858890 ATAGCGTACGCTTTATCTGTG 58 133858908 133858930 GGATTTGATACTGAGGGTTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777,ENSRNOT00000051362 1 2 2 80 18 1307684 1307703 TTACGGAAAGCAAGTCAGAG 58 1307535 1307643 GTCATTCGCTTCTTCTAACTG 57 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777,ENSRNOT00000051362 3 2 2 80 18 1299300 1299321 GATGTTGACCTGAAACAGTCTC 59 1297583 1299260 ACTCTTAACTGCATCCTCCA 59 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 1 2 2 80 3 55969195 55969305 AATAATCAACCTGCTGGAAGAG 59 55969343 55969364 AAGACAACGAAAGTTCTCACAC 60 NA Rattus norvegicus 81 Olr153 ENSRNOG00000017214 ENSRNOT00000023124 3 1 1 60 1 169562646 169562664 TACACTACCATCCTCACCC 58 169562687 169562706 TCCTGCTGATAATCACCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83g ENSRNOG00000027924 ENSRNOT00000027312 3 1 1 81 10 47978480 47979123 TCCTACAGCTTCACATGGT 58 47979168 47979186 CAAACATCTCGACCACCTG 59 NA Rattus norvegicus 81 Olr1408 ENSRNOG00000047426 ENSRNOT00000040534 2 1 1 60 10 36517946 36517966 ATCTACATACGACCTCCAGAC 59 36517986 36518006 TAAACATGATGGTGGCTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl7a ENSRNOG00000016641 ENSRNOT00000022395 1 1 1 60 5 73496336 73496356 TACTGGCTTCTGTAAATGTGG 58 73496376 73496396 TGTTGAGATCTTATGAGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000019853 2 2 4 87 7 117709548 117711085 CTACACAGAGGTTCAGTTCC 58 117709480 117709498 GTTCAGTACTGTGAACCGT 57 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 2 1 1 66 15 31642298 31644840 AAACCTCACTCACATCAGG 57 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Gabrb2 ENSRNOG00000003680 ENSRNOT00000004970 2 1 1 80 10 27976655 28040684 CTGAAGTCAATATGGACTACACC 59 28040720 28040742 GGATTACATTGTAGGACAGTCTC 59 NA Rattus norvegicus 81 LOC684828 ENSRNOG00000048264 ENSRNOT00000075069 1 1 1 60 17 43798188 43798206 CTAGCTGCGCTTAAGAAGG 58 43798146 43798164 GGCTGTTGTTCTTCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000086216 2 3 12 60 20 3361585 3361605 ATGATACTCTCCCACAGACAG 59 3361627 3361645 GTAGGAGCCATTTAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd1 ENSRNOG00000025689 ENSRNOT00000010403 1 1 1 80 6 26788981 26788999 GTGAAGCACATAAAGCACC 57 26788801 26788939 GTTAAGTACCAGTATCCCTCC 57 NA Rattus norvegicus 81 LOC100911795 ENSRNOG00000022462 ENSRNOT00000030579 2 1 1 80 15 57715836 57715858 AGGATATTCTGTCTCCCTAAGAG 59 57715896 57717512 AGTATGAGTTTGGTAACCGAC 58 NA Rattus norvegicus 81 Scamp4 ENSRNOG00000018271 ENSRNOT00000024980 2 1 1 111 7 11972752 11972770 CATTGGGTTCTTTGGGACC 59 11970850 11972680 CCTGTGTACCTTCACAATAGTG 59 NA Rattus norvegicus 81 LOC100909476 ENSRNOG00000009166 ENSRNOT00000012256 3 1 1 84 6 127310092 127311127 GCTGGAAGACTGTGTTCTC 58 127310026 127310045 CTGGTAATGGATGACATGCT 58 NA Rattus norvegicus 81 Sec31b ENSRNOG00000025781 ENSRNOT00000035758 2 1 1 80 1 264279143 264279162 CTTGGAGCATGATTCCAGAC 59 264278856 264279101 CATGTGTCCACCTTCTTCTG 59 NA Rattus norvegicus 81 Nid1 ENSRNOG00000002461 ENSRNOT00000003349 2 1 1 80 17 90588895 90588913 GCCACAGATTCCCTATGGT 59 90585694 90588852 GAAGTGATCACTGAGCTGGA 60 NA Rattus norvegicus 81 Rcor3 ENSRNOG00000046445 ENSRNOT00000073588 3 1 1 80 13 110851576 110853639 ATGTTGAACAGGCACTTGG 59 110851514 110851532 GCGTGAAATTAGGGAGGTC 58 NA Rattus norvegicus 81 Shf ENSRNOG00000028685 ENSRNOT00000064592 1 1 1 80 3 114295830 114298060 AAGATGATGGCTGAGATCCG 60 114295769 114295787 TTCTGGCTCATAGGGTGTG 59 NA Rattus norvegicus 81 Shf ENSRNOG00000028685 ENSRNOT00000064592 2 1 1 80 3 114295673 114295693 CCTCCAGAAGAGTATGACCAG 59 114294200 114295633 GATGACCTTTATGTCAACCGC 60 NA Rattus norvegicus 81 Nkapl ENSRNOG00000056708 ENSRNOT00000080417 2 1 1 60 17 45175630 45175649 AAGGAGGAGAGCTATAGGCA 60 45175672 45175690 CTCCCAGTTCTCCAATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkapl ENSRNOG00000056708 ENSRNOT00000080417 3 1 1 60 17 45175630 45175649 AAGGAGGAGAGCTATAGGCA 60 45175671 45175690 CTCCCAGTTCTCCAATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr305 ENSRNOG00000052972 ENSRNOT00000089511 3 1 1 60 1 213169687 213169707 CATGGACATTATCTGCACCTC 59 213169727 213169747 CTCAGACAGTAGACCAACCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 1 2 2 80 7 38919684 38924097 CACACCAATGAAGACTTTCCA 59 38924136 38924157 ATCAAGTTCATGGTCATCACAG 59 NA Rattus norvegicus 81 Glrx5 ENSRNOG00000004206 ENSRNOT00000005781 3 1 1 97 6 128751101 128759062 GAGGCAAGGTATTAAAGACTATTCC 60 128759117 128759135 GCATCTGCAGAAGGATGTC 59 NA Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 3 2 2 80 19 56026712 56027324 TATGGCATTGTGTATCGAGC 58 56027367 56027385 TTTCTCTTTGTCCATCCGC 58 NA Rattus norvegicus 81 AABR07017900.1 ENSRNOG00000054909 ENSRNOT00000072382 1 1 1 72 15 32355641 32355659 TACTCCTAGGCCTTCACCT 59 32355830 32355848 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 H1foo ENSRNOG00000025251 ENSRNOT00000042673 1 1 1 80 4 147847386 147848093 CAGCTTCAAGCTAGTTCCC 58 147848137 147848155 TCCTTGGTACCTGTAGCTC 58 NA Rattus norvegicus 81 Trappc3l ENSRNOG00000031290 ENSRNOT00000047000 2 1 1 92 20 27660744 27660762 ATAGAAGAGCTGCCTGCTG 60 27660816 27664292 CGCTAAATGAACCATCTCCAG 59 NA Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000063970 1 1 2 146 6 127333679 127333697 GTCAGCCATTGCTAATGGG 59 127334212 127334320 ACCTCTGTTCCCATGTTGG 60 NA Rattus norvegicus 81 Psmb2 ENSRNOG00000011463 ENSRNOT00000015618 1 1 1 80 5 144702089 144702107 CCTGACTATGTCCTGGTCG 59 144702148 144708567 AAACATCTTGTCATGATCGTCC 59 NA Rattus norvegicus 81 Psmb2 ENSRNOG00000011463 ENSRNOT00000015618 2 1 1 80 5 144702087 144702105 GTCCTGACTATGTCCTGGT 58 144702148 144708565 ACATCTTGTCATGATCGTCC 58 NA Rattus norvegicus 81 AABR07072562.1 ENSRNOG00000050653 ENSRNOT00000073029 2 1 1 60 17 69617331 69617351 AGGAACCTAAACAACAGACAC 58 69617373 69617391 TGGTAGAAGAACTGGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc47a1 ENSRNOG00000057404 ENSRNOT00000086579 1 1 1 80 10 47647809 47647827 CTGTGACCTTCTGTGTCCT 59 47641362 47647765 AGGCCACAATATCCCAGTC 59 NA Rattus norvegicus 81 Tfec ENSRNOG00000061595 ENSRNOT00000086810 1 1 1 80 4 44066845 44066863 CCCGGGAGTTAGAACACAG 60 44065867 44066804 GTATTTCTAGCTCCTGAATGCG 59 NA Rattus norvegicus 81 Tfec ENSRNOG00000061595 ENSRNOT00000086810 3 1 1 82 4 44077828 44077849 ATTTCTCCAGTTAACACTGGTC 58 44076641 44077787 GTGTCAGTTTCTGCAATTTCC 58 NA Rattus norvegicus 81 Fam151b ENSRNOG00000024136 ENSRNOT00000031909 1 1 1 89 2 22038346 22039197 GAAAGTCAATGAAGGATACACCTG 60 22038280 22038298 CTGACAGGGAAGGTGACAG 60 NA Rattus norvegicus 81 AABR07017830.1 ENSRNOG00000046356 ENSRNOT00000071642 1 1 1 95 15 31579511 31579647 CTCCTCATCCTCACAAGGG 59 31579700 31579724 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763 1 1 2 80 13 82600396 82602391 AGTACAGACAGAGGTAAATCGT 59 82600337 82600357 CGTTCAAAGTGATACTGTGGG 59 NA Rattus norvegicus 81 Gcc2 ENSRNOG00000000823 ENSRNOT00000001092 1 1 1 80 20 27848358 27848467 TCTAACAGGAAAGAGGCCC 59 27848509 27848529 CATAGAAGCAGATAAGCGGTC 59 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 1 2 2 80 3 56063550 56063570 AGGTGCAGAGTTACAATTCAG 58 56063610 56067512 CTGAGCACAGTCCATATTCTG 59 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 2 2 2 80 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141007 11142014 AGGATAAAGCCCTTGTGAGG 60 NA Rattus norvegicus 81 Sec1 ENSRNOG00000021014 ENSRNOT00000028522 2 1 1 60 1 101664149 101664167 CTCCTGGACCTTCTACCAC 59 101664107 101664126 GTCATGCAGAGTGAACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910308 ENSRNOG00000046308 ENSRNOT00000002890 2 1 1 80 14 33973607 33973625 AGTAACTCCGGAAGGACTC 58 33971781 33973565 TTTGACTTGAGAAGCAACTCC 59 NA Rattus norvegicus 81 Grina ENSRNOG00000029941 ENSRNOT00000059599 1 1 1 80 7 117306888 117306996 ATCTTCTCCATGCAGACCC 59 117307040 117307058 GAAGATGAAGAGCACCACC 58 NA Rattus norvegicus 81 RGD1311756 ENSRNOG00000004442 ENSRNOT00000005903 2 1 1 80 6 124824657 124826269 GACATAAGGACCATCTGTCCA 59 124826309 124826329 GTACTCTTCCAGTGAGGTCAG 60 NA Rattus norvegicus 81 Agtrap ENSRNOG00000008619 ENSRNOT00000011747 1 1 1 80 5 164891675 164891693 CTTCACTATCCTGGCCCTG 60 164891114 164891631 AAGCCACCAAGAAACATGC 59 NA Rattus norvegicus 81 Agtrap ENSRNOG00000008619 ENSRNOT00000011747 3 1 1 82 5 164891677 164891695 AACTTCACTATCCTGGCCC 59 164891114 164891631 AAGCCACCAAGAAACATGC 59 NA Rattus norvegicus 81 Klk4 ENSRNOG00000018864 ENSRNOT00000025614 1 1 1 80 1 99831627 99831890 TGCATACAGGACTCCTACAC 59 99831933 99831951 CTCTAACATCCGACTGCCA 59 NA Rattus norvegicus 81 LOC100365136 ENSRNOG00000049881 ENSRNOT00000048256 2 1 1 81 1 38486274 38486294 AGAAGTGTAAATTCGAGAGGC 58 38484845 38486231 ACATCCAGACTGTAGTCCC 58 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 2 3 3 80 13 85398134 85398154 ACTCAAAGAAATCACCGAAGG 59 85397250 85398092 ACTGTCTCCTCTTTCCGTG 59 NA Rattus norvegicus 81 Klhl2 ENSRNOG00000029441 ENSRNOT00000047223 3 1 1 80 16 26838129 26838147 TGCTACGACTTCAAAGAGG 57 26838191 26840089 CATATACACCATCCCTGCC 58 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962,ENSRNOT00000021258 2 2 2 81 9 112026375 112027134 GAACCATCAGTAATGGATCAAGAC 60 112026317 112026335 TCCTGCCTGTAATCGTCTG 59 NA Rattus norvegicus 81 Olr1616 ENSRNOG00000053022 ENSRNOT00000087369 2 1 1 60 15 27267297 27267318 TTACTCCACTCATTAATCCCGT 59 27267337 27267357 AGGGCATGTTTCATATCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1616 ENSRNOG00000053022 ENSRNOT00000087369 3 1 1 60 15 27267299 27267318 ACTCCACTCATTAATCCCGT 59 27267339 27267359 GCAGGGCATGTTTCATATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000060179,ENSRNOT00000080114 2 3 3 80 14 22109727 22109746 GACTGGTGAAGACACATCTG 58 22109787 22113678 GTGCCACATAAATCATCTTGC 58 NA Rattus norvegicus 81 Spag6l ENSRNOG00000022021 ENSRNOT00000002513 2 1 1 80 17 85433453 85433471 AGAACCGGGTTCTATCCTC 58 85433510 85437712 GGAGAATAATACCTCACTATCTCC 58 NA Rattus norvegicus 81 Zfp511 ENSRNOG00000018272 ENSRNOT00000046314 3 1 1 81 1 212360273 212360291 GCATTTGCTGGATGTCCAC 60 212360336 212360440 GCACTGGTACATGTCTTGC 59 NA Rattus norvegicus 81 AC133424.2 ENSRNOG00000059982 ENSRNOT00000085376 2 1 1 60 15 35571189 35571208 CCTCTTCTTCCTCTTCACAG 57 35571231 35571249 AATTATGCCCAGGTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.2 ENSRNOG00000059982 ENSRNOT00000085376 3 1 1 60 15 35571480 35571498 TGTTGCCATCTGTAACCCA 59 35571519 35571540 AGAAGTGTAAATCTGAGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrn1 ENSRNOG00000006802 ENSRNOT00000008879 3 1 1 60 4 139670242 139670265 CTTCCATATTGAATAGTGAGTGCC 60 139670281 139670302 GTAAACCAAGGACGAATTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink2 ENSRNOG00000047065 ENSRNOT00000075226 1 1 1 82 14 33249356 33251599 AATTCAGAACACCAGACTGTC 58 33251643 33251661 GTTCATATCCGTTCCGCAC 59 NA Rattus norvegicus 81 LOC100362366 ENSRNOG00000028690 ENSRNOT00000037043 1 1 1 60 3 24600761 24600779 GGTCTCAGCCCTAGATCAG 59 24600719 24600739 CTTCAGCATTTCCTTGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11e ENSRNOG00000022255 ENSRNOT00000036948 3 1 1 81 14 23089761 23089782 CCTCATCTCTTTCTTATCCCTG 58 23089822 23092892 TCTCCTGTGATTGTATCTGAC 57 NA Rattus norvegicus 81 Calb2 ENSRNOG00000016977 ENSRNOT00000022943 3 1 1 80 19 41503558 41503913 GATGTCTAGACTCTTGCCTG 58 41504223 41504242 GCATTGAACTCTTCTGAGGT 58 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337,ENSRNOT00000019748 2 2 3 80 2 144876434 144876454 TCCTCCACTTCACTTTCATCC 60 144876496 144879011 TTCGTCGGACTCTTCTTCC 59 NA Rattus norvegicus 81 RGD1565911 ENSRNOG00000042840 ENSRNOT00000068178 3 1 1 60 5 87354137 87354157 CACAGTCCTGAAACAAATGAG 58 87354176 87354197 GTATTGTATGTCCTTCAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 3 2 2 81 12 23789797 23789815 GCAACTAGTGCAGAAAGCC 60 23789859 23814659 CTCTGTCACGTTCTTCATGG 59 NA Rattus norvegicus 81 Magec2 ENSRNOG00000026265 ENSRNOT00000033723 3 1 1 145 X 145359797 145360510 CCTGGAGTTCATCAGGATCC 60 145360754 145360772 TACACCTTCTTCCAGGCTG 59 NA InUTR Rattus norvegicus 81 Dmc1 ENSRNOG00000013807 ENSRNOT00000018526 1 1 1 80 7 120833806 120835194 CACGGAATCAACATGGCTG 60 120833744 120833765 TCTCGTTGTCATTTGTATCCCT 60 NA Rattus norvegicus 81 Pcgf6 ENSRNOG00000020250 ENSRNOT00000027450 3 1 1 80 1 266826052 266826070 CCCTAGAGTCAGTGTTTCG 57 266823472 266826009 CTGTGTCTTCATTAGCACCA 58 NA Rattus norvegicus 81 Prmt5 ENSRNOG00000012046 ENSRNOT00000016302 2 1 1 80 15 33160631 33160651 GGACAATCTGGAATCTCAGAC 58 33160477 33160589 TTATAGATGGCCTGCTGGT 58 NA Rattus norvegicus 81 Atp6v1b2 ENSRNOG00000011891 ENSRNOT00000015931 2 1 1 80 16 22331107 22331802 CACAACAGACAGATTTACCCT 58 22331047 22331068 CATTCCTTCTCCAATAGCTGAC 59 NA Rattus norvegicus 81 Pmaip1 ENSRNOG00000018770 ENSRNOT00000025362 1 1 1 133 18 62176730 62176748 AAAGTGTACTGCACGTGGA 60 62176845 62178749 CACTCGTCCTTCAGGTCTG 60 NA Rattus norvegicus 81 Gbp1 ENSRNOG00000023943 ENSRNOT00000045855 1 1 1 80 2 248405007 248405027 CCAAGGAGGCTATTACTACTG 57 248405069 248407169 TCCGTTCCACTTCAATCTC 57 NA Rattus norvegicus 81 Rn60_13_0880.3 ENSRNOG00000051312 ENSRNOT00000075853 2 1 1 60 13 83037176 83037195 AAACATGCACCATCGTTGTC 60 83037135 83037154 CTTAGCCAGAACACCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913,ENSRNOT00000055077 1 2 2 80 X 2089986 2104897 AATTGATGAGATGGTTGGCA 58 2089925 2089943 ACCCTCTGAGCATCTTCAG 59 NA Rattus norvegicus 81 Zfp276 ENSRNOG00000016631 ENSRNOT00000022324 3 1 1 80 19 56064511 56064826 GCATGAAGAAGCACATTAAGG 58 56064867 56064886 TGAATACCTTGTTGCAACCA 58 NA Rattus norvegicus 81 Foxi3 ENSRNOG00000006491 ENSRNOT00000008494 1 1 1 65 4 98776471 98776489 CTGCTTCAAGAAAGTGCCC 60 98779480 98779502 GGATCTAGAGTCCAGTAATTACC 58 NA DesignNoJunction Rattus norvegicus 81 Derl1 ENSRNOG00000005551 ENSRNOT00000007484 3 1 1 80 7 97745963 97745981 CAGTACTTTACGTCTGGGC 58 97744889 97745921 AGTAACAGGCCTTAAATCGTG 59 NA Rattus norvegicus 81 Lpcat4 ENSRNOG00000005058 ENSRNOT00000006776 1 1 1 80 3 103726344 103727779 GGGTTAAGTTCTGCCTCCT 59 103727823 103727841 GCCAGAGGAGAAAGAGGAC 60 NA Rattus norvegicus 81 Actl10 ENSRNOG00000036864 ENSRNOT00000055335 2 1 1 60 3 150056273 150056291 CAAGACCGTTACACAGCTC 59 150056314 150056333 ATCACCCTGGAAATCTAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040947.1 ENSRNOG00000011100 ENSRNOT00000014756 2 1 1 96 X 115425507 115425575 AAGAGATGGCTAGTGTCGTG 60 115425430 115425448 ATGACTGACACCAAAGCCA 60 NA Rattus norvegicus 81 Rgn ENSRNOG00000007949 ENSRNOT00000010984 3 1 1 80 X 1837853 1846026 GGAGATACTTTGCTGGTACCA 60 1837793 1837811 AAAGGGAGTACAAGGACCC 59 NA Rattus norvegicus 81 Rn60_10_0694.1 ENSRNOG00000057272 ENSRNOT00000087601 1 1 1 60 10 69732708 69732728 CTGGAAGTCCAATATGAAGGT 58 69732668 69732686 AAGACATCCATCTGCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pzp ENSRNOG00000006709 ENSRNOT00000009467 3 1 1 80 4 161849575 161849596 GAGTACAGTACTCAAACCTCCT 59 161848517 161849535 GCCTTGAGATCGTGAAAGAG 59 NA Rattus norvegicus 81 Sphk2 ENSRNOG00000021032 ENSRNOT00000028549 2 1 1 85 1 101695060 101695186 ACCTCATACAGACAGAACGAC 60 101694995 101695013 CACAGTGACAATGCCTTCC 59 NA Rattus norvegicus 81 LOC362901 ENSRNOG00000031383 ENSRNOT00000040687 3 1 1 81 7 75559669 75559687 GATGGTGCTGATGATGGTG 59 75554436 75556150 CACCCATGAGTCCTCTGTC 60 NA Rattus norvegicus 81 AABR07049136.1 ENSRNOG00000058501 ENSRNOT00000051752 3 1 1 60 5 107505212 107505230 TCAAGCTATCCCTGTCCTG 59 107505170 107505190 CTTTGATGTGAAGAGGCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2f1 ENSRNOG00000047134 ENSRNOT00000073683 1 1 1 80 9 10036979 10036997 TACAATTTCACACCGCTGG 59 10037041 10038478 GACCTTGTTCCTCCTCTCC 59 NA Rattus norvegicus 81 Folh1 ENSRNOG00000013770 ENSRNOT00000018592 1 1 1 80 1 150357441 150359472 AAGAAGAAAGGTTGGAGGC 58 150357379 150357397 AGTAGAACCAAGAAGGCCA 58 NA Rattus norvegicus 81 Folh1 ENSRNOG00000013770 ENSRNOT00000018592 3 1 1 80 1 150365717 150380677 AGCAAATGAATATGCCTACAGG 59 150365658 150365679 TCATATCCAATTGGATGGACAG 58 NA Rattus norvegicus 81 Suox ENSRNOG00000005987 ENSRNOT00000008018 1 1 1 99 7 3100380 3100399 TGATAACTCAAGGACTCGGG 59 3100121 3100318 CTCCTGAGAAGCCCTACAC 59 NA Rattus norvegicus 81 Olr869 ENSRNOG00000048408 ENSRNOT00000048274 1 1 1 60 5 137927632 137927652 GATCTGTGGTTTCTCTTCCTC 58 137927592 137927611 ACAATAGGGCAGACTCATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcorl1 ENSRNOG00000005076 ENSRNOT00000006805 2 1 1 80 X 135218150 135218168 CATTGGCTACCTACTCGGG 60 135218210 135225937 AGAGGTGATCACTGAGAAAGC 60 NA Rattus norvegicus 81 Casc3 ENSRNOG00000009716 ENSRNOT00000013204 3 1 1 80 10 86734411 86734432 ACTTTATGGCTATGACATTCGG 59 86734472 86734631 CTTCCAAATCGAGGTTTCCG 59 NA Rattus norvegicus 81 Rn60_X_0695.1 ENSRNOG00000038099 ENSRNOT00000057979 2 1 1 60 X 68581242 68581262 AGCTTCCTTGTATCTACACCA 59 68581283 68581302 ATAGATGGTAGCACCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032,ENSRNOT00000021196 2 2 2 130 7 126423887 126429684 GCAGAAAGGTTCTGGAGGA 59 126423775 126423794 CTTCTCCTTGAGTAGGTGGC 60 NA Rattus norvegicus 81 Elmo3 ENSRNOG00000015800 ENSRNOT00000021362 1 1 1 80 19 37264360 37264379 TTCTCCATCAGCTATGACCA 58 37264422 37264523 CCACAGGTAGAAATCCCGT 59 NA Rattus norvegicus 81 Elmo3 ENSRNOG00000015800 ENSRNOT00000021362 2 1 1 80 19 37262755 37262874 CTAGGCTTCTCCAATAGCAG 58 37262917 37262935 GTAGAGCATGTTGTCCAGG 58 NA Rattus norvegicus 81 Tspan32 ENSRNOG00000026039 ENSRNOT00000054863 3 1 1 80 1 216203955 216203974 GCATCAGGAACTTTCTGTGG 59 216204017 216204330 TAGCATATACCGTGAGGGC 59 NA Rattus norvegicus 81 Zg16 ENSRNOG00000016857 ENSRNOT00000022758 2 1 1 80 1 198484202 198485179 CATAATAGGTCTCCAGGTGC 58 198484141 198484159 AAGATCTCCTCCAGGTCTC 58 NA Rattus norvegicus 81 Dstyk ENSRNOG00000021298 ENSRNOT00000004810 1 1 1 80 13 49211121 49211140 CAAGAAGACAGTGAGGACAC 58 49211182 49224926 GTCCACTTCCTGTAGGAGAG 59 NA Rattus norvegicus 81 Marf1 ENSRNOG00000056248 ENSRNOT00000091520 3 1 1 80 10 932965 932986 CCAGTTCTCTTTGAAGAGTTGG 59 933026 933131 TACAAGTTCGCTGAAGTCCT 59 NA Rattus norvegicus 81 Nap1l1 ENSRNOG00000003890 ENSRNOT00000005286 2 1 1 80 7 54233183 54233201 GGACAGTTCGTACTGTGAC 58 54233244 54233384 CATTCTCAGGAACTTCAGGA 57 NA Rattus norvegicus 81 Tmcc2 ENSRNOG00000000033 ENSRNOT00000000036 2 1 1 80 13 49135265 49136561 CGCTACAGGTATGAGAGGC 60 49135203 49135223 CTGCTTTAGGTTGGTCATCTC 59 NA Rattus norvegicus 81 Mkrn3 ENSRNOG00000010172 ENSRNOT00000013551 3 1 1 102 1 123064618 123064636 GAGTCTACAGCTCCCATGG 59 123064341 123064359 AAGCCTCAAACTGAGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem165 ENSRNOG00000002199 ENSRNOT00000003010 3 1 1 80 14 34503801 34504423 CTCTGTCAGAACTGTGACG 58 34503739 34503761 GACTCTGGACTTATAAACAGAGC 59 NA Rattus norvegicus 81 Jsrp1 ENSRNOG00000032951 ENSRNOT00000044417 3 1 1 67 7 11771179 11771404 CAAGACTCGAGGGACATCC 60 11772424 11772442 TAACTGGGTCCTGAAGGAC 58 NA DesignRelaxed Rattus norvegicus 81 Fam184a ENSRNOG00000026407 ENSRNOT00000000475 2 1 1 80 20 34991249 34991267 AAACACCACATGGCTATCG 58 34983239 34991207 TTGTTCTTCCAATTCCGTCTG 59 NA Rattus norvegicus 81 Wbscr28 ENSRNOG00000001474 ENSRNOT00000033499 1 1 1 80 12 24807197 24807215 CTGGTACTGCTGCTAACCT 59 24807259 24807993 CATAGAACTCTGGCTGTGC 58 NA Rattus norvegicus 81 Exd2 ENSRNOG00000027707 ENSRNOT00000033378 2 1 1 80 6 104032909 104032929 CTTCTACAGGATTATGGCCTC 58 104032971 104037568 GAGTACACTGTTTCCCTGC 58 NA Rattus norvegicus 81 Exd2 ENSRNOG00000027707 ENSRNOT00000033378 3 1 1 80 6 104037613 104037631 CTTCCCACTTGACAAGTCC 58 104037672 104043374 GCATAAGTTACCTGGTCTTCAG 59 NA Rattus norvegicus 81 Zfp541 ENSRNOG00000021800 ENSRNOT00000058241 1 1 1 80 1 77986172 77986192 ATGAGAATGTAGCTTCTCTGG 57 77986234 77986552 GTTCCATCACTCTGTCCTG 58 NA Rattus norvegicus 81 Olr854 ENSRNOG00000014263 ENSRNOT00000019099 2 1 1 60 5 75910038 75910058 GTATACTTCTGGCTGTGATGG 58 75909998 75910019 TATCTCAGAGGGTTACAAATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr854 ENSRNOG00000014263 ENSRNOT00000019099 3 1 1 60 5 75910167 75910185 GACATCTGCTACACGTCTG 58 75910125 75910146 TCTTAGATGACAGCAAGTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St5 ENSRNOG00000013934 ENSRNOT00000064902 1 1 1 80 1 174151690 174152303 TCAGAATACAGCAGTGAAACC 58 174151630 174151648 TAAGCGCCTACAATAGCCA 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 3 2 2 80 4 162182042 162183073 AACAACTTGGTTCCCATCC 58 162181980 162181998 ATAGACCCTGCTACTGCTG 59 NA Rattus norvegicus 81 Sf3a2 ENSRNOG00000019349 ENSRNOT00000026202 2 1 1 80 7 11779874 11780236 ACATCAGACTAACTTGGCCC 60 11779813 11779831 ACCTTGACCTTCTCTGGTG 59 NA Rattus norvegicus 81 Impdh2 ENSRNOG00000031965 ENSRNOT00000047717 3 1 1 80 8 117350760 117350779 CTGTTATTGCTGATGGAGGA 57 117350822 117350926 CCATCATGACTGTAGAGGC 57 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 2 2 2 80 1 78518366 78518390 GTCATTCCTTATGAAACAGATGAGG 60 78505961 78518330 CTTTGGTTTCTTGGTGTTCCT 59 NA Rattus norvegicus 81 Fgf6 ENSRNOG00000053662 ENSRNOT00000081426 2 1 1 102 4 159564054 159564072 GGAGACTCTACTGCAACGT 59 159564138 159565198 ATTTCCAGCAGGCTGTAGG 60 NA Rattus norvegicus 81 Nlrp4a ENSRNOG00000042030 ENSRNOT00000043739 2 1 1 80 1 69369783 69377883 CCTCAAGTCACTATGTTTGAGAC 59 69369725 69369746 TGGTTGTTCCTTAAGACTTCAG 58 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 2 2 2 80 14 83092688 83092709 AAGATAAATATTCTGCCTCCGC 59 83092509 83092648 GAAACACTGTTCCTGTGACG 60 NA Rattus norvegicus 81 Mtmr11 ENSRNOG00000021176 ENSRNOT00000056262 2 1 1 80 2 198306303 198306322 TGCCTAGTCTTGCTGATGTC 60 198306360 198307838 TATCTTCAGCTACAGATGAGTCAG 60 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 3 2 2 80 10 13736555 13736683 TACTCTGAAGAAACGGAAGGTC 60 13736724 13736742 AGCCAAATCAGGATCCCAG 60 NA Rattus norvegicus 81 Foxb2 ENSRNOG00000032137 ENSRNOT00000052350 1 1 1 91 1 237066950 237066968 GTCTCAGTTCCCACCTACG 60 237067028 237067046 TCTCTATAGCGAACGGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 2 2 2 83 12 24149027 24149045 ATTAGCTACCAGTTGGCCA 59 24151422 24151440 CGTACAGATCTTATGGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Myeov2 ENSRNOG00000037402 ENSRNOT00000056600 2 1 1 61 9 99816010 99818200 TGTAGACTTGGATGAGGCTG 59 99815968 99815986 TTTCATTGGCTGCCAAGTC 59 NA DesignRelaxed Rattus norvegicus 81 Fam209a ENSRNOG00000005235 ENSRNOT00000006949 2 1 1 95 3 170476119 170477184 AGAACAAGGAGCAGAATCCT 59 170477242 170477260 AAGTGAAGTCTTTGCTGGG 58 NA Rattus norvegicus 81 Mlc1 ENSRNOG00000032871 ENSRNOT00000055879 1 1 1 80 7 129958279 129958727 TCCTAAAGTCCTATTCTGTGGT 58 129958220 129958241 CCTCTACATTTAGAGCGATCAC 59 NA Rattus norvegicus 81 Mlc1 ENSRNOG00000032871 ENSRNOT00000055879 3 1 1 80 7 129956004 129956815 CAAATGTCTGGTGGAGGTC 58 129955942 129955960 AAGGACAGGTATCCAGAGG 58 NA Rattus norvegicus 81 Ms4a6a ENSRNOG00000020991 ENSRNOT00000033795 2 1 1 80 1 227923909 227926579 GATGACTAAGCCTTTGGTTCAG 59 227923850 227923872 AGTATAACAAGGCCTATGAGAGC 60 NA Rattus norvegicus 81 Chrm3 ENSRNOG00000049410 ENSRNOT00000075651 2 1 1 60 17 63993610 63993628 TAGACCACTCACCTACCGA 59 63993568 63993587 CAGACCAATCATCACACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc74a ENSRNOG00000001876 ENSRNOT00000002567 3 1 1 81 11 87552780 87552970 CCTTAGTAAGAAGTGCCTAATTCTG 59 87553008 87553027 CTTCAGGCTCTGTTTCAACG 60 NA Rattus norvegicus 81 Tas2r121 ENSRNOG00000005717 ENSRNOT00000007521 2 1 1 60 4 166868936 166868957 TCAACACTCACATAGAAGACTG 58 166868897 166868920 CTGGAATCCCACGTTATATTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1601 ENSRNOG00000003560 ENSRNOT00000004728 1 1 1 60 13 92413181 92413199 AGACAAGGAGCAAGCAGAG 60 92413221 92413241 AGGCAACAGAATCATTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas1 ENSRNOG00000050485 ENSRNOT00000073271 3 1 1 97 17 4847602 4847620 TCGGTCAAGGAGAACATGG 59 4847681 4847699 TCGTAGTAGTCGTCTAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Opn1sw ENSRNOG00000006874 ENSRNOT00000009278 2 1 1 80 4 56656647 56656667 CAGCTGTCATGGATACTTCCT 60 56656416 56656607 GTCACTAGACCTGCTACAGAG 59 NA Rattus norvegicus 81 LOC688776 ENSRNOG00000029859 ENSRNOT00000049703 1 1 1 60 13 69172441 69172459 ATCCTCGAAAGAGTGCACC 60 69172399 69172422 GGGAATTTGATGATAGCATAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocs3 ENSRNOG00000025067 ENSRNOT00000039403 3 1 1 60 3 164987611 164987631 GAGGAGAAGCGAAATTCACAG 59 164987650 164987671 CCAGTTTGCAAATCACATACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adprm ENSRNOG00000003397 ENSRNOT00000004560 3 1 1 80 10 53585532 53586726 AGTCCTCAAGGACTTTCTGAG 59 53585472 53585490 TTCGTTCAACCAGTTCAGC 59 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 1 1 1 95 10 109786436 109786529 CAAGCGTAAGAAGCCTTGC 60 109786588 109786606 TACACTGGAAAGTCCCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Slc14a2 ENSRNOG00000061714 ENSRNOT00000078016 2 1 1 80 18 74546609 74547089 TATGATGGCAGTGGTTGGT 59 74546547 74546565 TTGCTTGTGAGGAGAAGGA 59 NA Rattus norvegicus 81 Zc3h11a ENSRNOG00000053210 ENSRNOT00000090858 3 1 1 80 13 50230034 50230052 AACTTGAGGACAATGGTGG 58 50230093 50231214 TTATGGTCTCATCTGAAGTCTC 57 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215,ENSRNOT00000084173,ENSRNOT00000064174 2 3 3 81 4 161734321 161734707 AGGAGACAGTAGGGAGACC 59 161734258 161734277 GGAAACGTTCTTGTTGTGGA 59 NA Rattus norvegicus 81 Arih2 ENSRNOG00000031827 ENSRNOT00000042577 1 1 1 80 8 117392463 117392829 TGTTCTACTTTGAGAGGTGGG 60 117392403 117392421 TCTTCTCGTGAATCCGCTG 60 NA Rattus norvegicus 81 Arih2 ENSRNOG00000031827 ENSRNOT00000042577 3 1 1 80 8 117394189 117394302 AATCACATGCAATGCTCCA 58 117392915 117392933 GTACTCACTACCATGCGTC 58 NA Rattus norvegicus 81 Oxa1l ENSRNOG00000009713 ENSRNOT00000013246 3 1 1 82 15 33012088 33012106 CTGAAATTGCACATCGGCT 59 33012152 33012252 CTGTCGTAAGGGTCCTCTG 59 NA Rattus norvegicus 81 Spcs1 ENSRNOG00000018075 ENSRNOT00000024447 3 1 1 81 16 7080772 7081245 TTCTCGTGTTTGCTGACAC 59 7080709 7080727 TGCCTGAGTCTTGAACAGG 60 NA Rattus norvegicus 81 AABR07017875.1 ENSRNOG00000052759 ENSRNOT00000072888 2 1 1 97 15 32160404 32160614 AGTTTAATTGGGTGAGCAGC 59 32160673 32160692 ACTGAATGTGCAGTTGAGAG 58 NA Rattus norvegicus 81 Slc7a12 ENSRNOG00000033830 ENSRNOT00000051741 3 1 1 80 2 88560193 88591529 ACCAAGACCTTATAAGGTGC 57 88560132 88560151 ATCACTGGTGTGAGAATGAG 57 NA Rattus norvegicus 81 Cx3cl1 ENSRNOG00000016326 ENSRNOT00000022128 2 1 1 113 19 10648702 10648720 GAAATGCAACATCACGTGC 59 10647109 10648625 CTCGTCTCCAGGATGATGG 59 NA Rattus norvegicus 81 LOC100360087 ENSRNOG00000031506 ENSRNOT00000044711 1 1 1 60 5 152326455 152326474 GTGACTTCTTGGAAAGCCAC 60 152326496 152326515 TTGCCCATCTTCTTGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360087 ENSRNOG00000031506 ENSRNOT00000044711 2 1 1 60 5 152326456 152326474 TGACTTCTTGGAAAGCCAC 58 152326496 152326516 GTTGCCCATCTTCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr853 ENSRNOG00000018357 ENSRNOT00000024722 3 1 1 60 5 69785584 69785602 CCAAGTCAAAGCACACCAC 60 69785625 69785644 GTCACGACTCCATAAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r43 ENSRNOG00000013563 ENSRNOT00000052226 3 1 1 80 1 149511054 149512028 TTGATTCTTTGCAGGTCCTC 58 149510993 149511013 TCTGATTCAGGTTCACTAGGT 58 NA Rattus norvegicus 81 Prss41 ENSRNOG00000033690 ENSRNOT00000007039 1 1 1 80 10 13186033 13186765 CACACTGCTTTAGAAAGTTCCT 59 13185974 13185992 TCCAGAAAGAAGGCTTGGA 59 NA Rattus norvegicus 81 Lrba ENSRNOG00000023453 ENSRNOT00000088188 1 1 1 80 2 185604526 185606190 ACACCAGTGATACCTTTGAC 58 185606233 185606251 TCATCTGACCACAGAACAC 57 NA Rattus norvegicus 81 Trem3 ENSRNOG00000013748 ENSRNOT00000018500 1 1 1 80 9 14714822 14714841 GGCTTCATACTGAACAAGGG 59 14714312 14714779 AGGCTGTAACACCTTAGGC 59 NA Rattus norvegicus 81 Npepl1 ENSRNOG00000028384 ENSRNOT00000034915 3 1 1 80 3 172198815 172199216 ATCTTCCTTGAGGAGATTAGCC 60 172199255 172199275 GGTCTTTAGCTGTTCATCACG 59 NA Rattus norvegicus 81 Ms4a14 ENSRNOG00000025805 ENSRNOT00000035812 3 1 1 80 1 227477384 227477404 GTAGAGTTCAGCATCTCTGTG 58 227474521 227477343 AAAGAAGAACACAGCCTCTC 58 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 1 1 1 60 4 149801039 149801057 GGTGTCCATTGAAGATCCC 58 149800994 149801015 AGTAGCTGTGAGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC691272 ENSRNOG00000043229 ENSRNOT00000064531 3 1 1 81 X 124047506 124052289 ATGCACTCCAAAGGAAAGAG 58 124045912 124045930 GCTCTTCGTTTGTTGAACC 58 NA Rattus norvegicus 81 Olr375 ENSRNOG00000032600 ENSRNOT00000040608 2 1 1 60 1 230605009 230605029 CATCCTAGTTCTGACAGTACC 57 230605048 230605069 AGAAGCGATGAACACATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgals12 ENSRNOG00000021207 ENSRNOT00000059154 1 1 1 80 1 222897893 222898913 ATGAAGAGGTGAAGGTGAGTG 60 222897833 222897851 GAGTATCCACCCGTGACAG 60 NA Rattus norvegicus 81 Nsrp1 ENSRNOG00000022502 ENSRNOT00000030749 2 1 1 84 10 63128568 63130452 TTTCGTGAAGCCAGAACTG 58 63130500 63130518 TCTGCTGTGGTCTGTTCTC 59 NA Rattus norvegicus 81 LOC100910565 ENSRNOG00000033358 ENSRNOT00000051671 1 1 1 80 1 81549444 81549464 AAGTCCAACCTTGTTCTATGC 59 81549105 81549402 GATACTGAGGCTACCTCCC 58 NA Rattus norvegicus 81 Zfp580 ENSRNOG00000016274 ENSRNOT00000021772 3 1 1 257 1 72339270 72339288 CTCCACTTCTTCCTCGGTG 60 72339031 72339050 CAAGTAAAGGGCTTGAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359587 ENSRNOG00000049342 ENSRNOT00000060304 3 1 1 95 15 31141178 31141291 TTTCTCCTGAGAGTTGCCC 59 31141349 31141368 ATACTTGCATCTCAGCTGCA 60 NA Rattus norvegicus 81 Pgk1 ENSRNOG00000058249 ENSRNOT00000077604 2 1 1 80 X 77263404 77263423 TGTCGCTTTCTAACAAGCTG 59 77263465 77267984 GAACATTGAAGTCCACCCTC 59 NA Rattus norvegicus 81 RGD1562165 ENSRNOG00000027547 ENSRNOT00000029187 2 1 1 60 5 71999987 72000008 TAACTATGGGACAGCTTTACGA 59 71999948 71999967 TAGGCCACATACAAGAATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cideb ENSRNOG00000020377 ENSRNOT00000027612 2 1 1 80 15 34441137 34443652 TGCTAGATAAGGAGGATGGGA 60 34441077 34441095 GAGCCATCAAGCATGTGTC 59 NA Rattus norvegicus 81 Riok3 ENSRNOG00000023376 ENSRNOT00000039377 3 1 1 80 18 3585275 3587189 AGACTCTCCACTTGATGCAG 60 3587232 3587250 GCCACAGCATGTTGTACTC 59 NA Rattus norvegicus 81 Arf5 ENSRNOG00000007806 ENSRNOT00000010429 1 1 1 80 4 55715896 55716436 TCCTTATGGTTGGCTTGGA 59 55716480 55716498 GGATGGTGGTGACAATCTC 58 NA Rattus norvegicus 81 Sbds ENSRNOG00000000888 ENSRNOT00000001190 1 1 1 80 12 29922644 29925410 GCAAGCAGATTCTGACTAAAGG 60 29925448 29925469 TATCCCTAAACATCTGCTCCAG 60 NA Rattus norvegicus 81 Arhgdia ENSRNOG00000036688 ENSRNOT00000054957 2 1 1 98 10 109755489 109755586 TCTTTCCGGGTGAACAGAG 59 109755323 109755341 CCCGACCATGTAGTCAGTC 60 NA Rattus norvegicus 81 Zfp939 ENSRNOG00000037366 ENSRNOT00000039649 3 1 1 138 1 95402784 95403884 GGAAATTATTGAAGCAGACCTG 58 95403983 95404001 TTTCTTACGTGCGTGACTC 58 NA Rattus norvegicus 81 AABR07022022.1 ENSRNOG00000023547 ENSRNOT00000034990 3 1 1 60 13 103080671 103080689 CCCGCTAACATCAAATGGG 59 103080629 103080647 AGTTGCCAGTAGACTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 2 2 2 80 2 93795275 93795887 GAAAGTGAAGAGCATCATAACC 58 93795927 93795946 TTTATGGTGGTCGACTTTCC 58 NA Rattus norvegicus 81 Hip1 ENSRNOG00000001448 ENSRNOT00000030497 1 1 1 80 12 24285809 24285827 GTCGTCTCCAGACAGTGAG 60 24285869 24287021 TTGTCAAACAAACTCTGCTGG 60 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000008067 ENSRNOT00000010676 1 1 1 80 6 135538803 135544081 TCCATCAAACGACAGATTCAG 59 135544122 135544141 ATAAGGCTCTATCCCACCAG 58 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000008067 ENSRNOT00000010676 2 1 1 80 6 135535104 135536994 GTGAGCGAGAAGAAAGTGAG 59 135537037 135537055 CTCTGTTTGGGTCGATGTC 58 NA Rattus norvegicus 81 LOC686911 ENSRNOG00000050100 ENSRNOT00000072588 1 1 1 85 14 34194475 34204666 AAGCAGATACGGACAATCCA 59 34194409 34194427 GGAGTACTTGGAGGCACAG 60 NA Rattus norvegicus 81 Mab21l2 ENSRNOG00000031398 ENSRNOT00000049461 2 1 1 60 2 185851046 185851069 CTCAATAACTACCACATGAAGACG 60 185851009 185851027 TTTCCCTCGGGTGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb26 ENSRNOG00000009346 ENSRNOT00000012433 2 1 1 133 3 21697893 21697911 CTTTGGCTCAGGTTGTCTG 59 21689984 21690006 GAAGGAGATCTGATCTTTCAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slitrk2 ENSRNOG00000011562 ENSRNOT00000015401 2 1 1 111 X 151103929 151104441 CTCCTGATGTGTTTGCCTG 59 151104516 151104534 TCGATCTGTAAGATCCCGG 58 NA InUTR Rattus norvegicus 81 Mir194-1 ENSRNOG00000035482 ENSRNOT00000053605 1 1 1 60 13 103250586 103250604 CACGTGTAACAGCAACTCC 59 103250628 103250646 AAAGTAACAGCAGCTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500594 ENSRNOG00000023112 ENSRNOT00000031564 3 1 1 80 5 169635925 169635943 TTATGGATGTGCAATGCCC 59 169635986 169636996 AGGTGATTGTTAAGACGACC 58 NA Rattus norvegicus 81 Tmod2 ENSRNOG00000010447 ENSRNOT00000014124 1 1 1 80 8 82509708 82511721 AAGATCGACAACCAGAGGC 60 82509646 82509666 GATCCTTGAGTTCTCCTCCAG 60 NA Rattus norvegicus 81 LOC100912543 ENSRNOG00000050632 ENSRNOT00000073807 2 1 1 60 3 158932021 158932040 AACTTGGCCTTTGTAGACCT 59 158931980 158932000 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h3a ENSRNOG00000050478 ENSRNOT00000074292 1 1 1 81 17 43626288 43626306 ACTTCAAGACCGACCTTCG 60 43626225 43626243 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000000525,ENSRNOT00000086283 3 2 5 104 20 4045453 4045471 CACAACTACGAGGAGACGG 60 4046884 4046902 CAAGTTGTGGTGGTTGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ythdf2 ENSRNOG00000010892 ENSRNOT00000014479 1 1 1 165 5 150389974 150389992 GTTACCAGTGAGGATCCGA 59 150383805 150388801 ATGCATTATTCGGCCTTGC 59 NA InUTR Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 2 1 1 61 X 152108567 152109992 TCCAGAGTAAGCCTGATGG 59 152108524 152108542 TTGTTGCTAAATGCCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Atad2 ENSRNOG00000025604 ENSRNOT00000008508 2 1 1 80 7 98021697 98021716 GTCAGATCAAGAGCAGAAGG 58 98021759 98022566 TTTCTCTTCAACCGAGCAG 58 NA Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 1 2 2 81 20 31102606 31142381 CTCAGATACCCTGGACCTG 59 31142426 31142444 GTCAGAGACGTTCCTCAGG 60 NA Rattus norvegicus 81 Lrrc20 ENSRNOG00000000560 ENSRNOT00000000676,ENSRNOT00000078719 2 2 2 82 20 31102606 31142381 CTCAGATACCCTGGACCTG 59 31142427 31142445 GGTCAGAGACGTTCCTCAG 60 NA Rattus norvegicus 81 Fgf7 ENSRNOG00000009425 ENSRNOT00000012700 2 1 1 81 3 118318089 118318108 AGTGGTACCTGAGGATTGAC 59 118318149 118365600 CTGATTTCCATGATGTTGTAGC 58 NA Rattus norvegicus 81 Comt ENSRNOG00000001889 ENSRNOT00000050269 3 1 1 81 11 86731438 86731456 ACCATGGAGATGAACCCTG 59 86731501 86731828 GGATGGTGACTTTGTCCTG 58 NA Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046434 ENSRNOT00000073188 1 1 1 86 17 43814938 43814956 TCAGGACTTCAAGACCGAC 59 43814870 43814888 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hax1 ENSRNOG00000045647 ENSRNOT00000076846 2 1 1 100 2 189333248 189333272 CAGAGTTTCAAAGTTTCTAGTACCC 60 189332687 189333190 AAAGGATCTCTGTGGCTCC 59 NA DesignRelaxed Rattus norvegicus 81 Rps15-ps2 ENSRNOG00000043026 ENSRNOT00000067441 3 1 1 65 7 2961561 2961579 AAGACCTTCAACCAGGTGG 60 2961451 2961470 GATAAATCGGGAGGAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Vps9d1 ENSRNOG00000028904 ENSRNOT00000051945 1 1 1 80 19 56047389 56047407 CTGAGGGCCACATATGAGG 60 56047239 56047348 TAGAGACAGAGTCAGTGATGTC 59 NA Rattus norvegicus 81 Rnpep ENSRNOG00000006720 ENSRNOT00000009198 3 1 1 80 13 52097745 52098554 AGATTGAACCAGGTGTTGAC 58 52097684 52097703 CCAGGTATGAGACAAAGCAG 58 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 3 1 1 60 4 56450997 56451124 TTGGGTTCTTCGGTACTACTC 59 56450957 56450975 CCTTGGTAACTCTGACTCG 57 NA DesignNoJunction Rattus norvegicus 81 Apbb2 ENSRNOG00000025509 ENSRNOT00000050664 2 1 1 108 14 43517821 43517839 ATCATGGACACTGGGAACC 59 43517911 43522925 TCTGATATCGCAGCATGCA 60 NA Rattus norvegicus 81 Apbb2 ENSRNOG00000025509 ENSRNOT00000050664 3 1 1 109 14 43517821 43517839 ATCATGGACACTGGGAACC 59 43517912 43522926 TTCTGATATCGCAGCATGC 59 NA Rattus norvegicus 81 Phf13 ENSRNOG00000009046 ENSRNOT00000012407 3 1 1 98 5 169164392 169166053 CTATCCGAAGGAGGAGCTC 59 169164312 169164330 TCAGAGAAACCAGTGTCCC 59 NA Rattus norvegicus 81 LOC100911319 ENSRNOG00000005067 ENSRNOT00000006725 1 1 1 60 6 7420675 7421187 GACTTCTTGTGCAAGACGG 59 7420633 7420651 TGTCCAGCATGTTGTTCAG 58 NA DesignRelaxed Rattus norvegicus 81 Olr203 ENSRNOG00000045907 ENSRNOT00000043904 1 1 1 60 1 173180029 173180047 CAGGAAGAAAGCCCTTGTC 59 173179987 173180005 CCCATACCACATCCCTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565685 ENSRNOG00000023187 ENSRNOT00000031808 3 1 1 81 X 11092889 11095963 GGTGTTGTCAGAAGAGATCTC 58 11096003 11096024 AAGGGCATTTCTAAGATCTGTG 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 2 2 2 80 7 130168950 130168970 CTGTTTCAGTCACTCCTAAGC 59 130168807 130168911 CTCATTACAAACTGCTTCCAGG 60 NA Rattus norvegicus 81 Lamb3 ENSRNOG00000006025 ENSRNOT00000008440 1 1 1 80 13 112061214 112061232 TAGTTCTGCAGCCATTCGT 59 112061276 112062002 AAGTCACAGTCACAGGCTC 60 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 3 2 2 80 19 1034445 1034465 AAGAAGAAACCACTGATTGGC 59 1030851 1034403 CTTGCGGATGGAGTATCCT 59 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 3 2 2 86 20 32124114 32133340 CAGTTCAAGGTTATCCTGCTC 59 32124048 32124066 TCTCCTCAATGCAGTTTGC 59 NA Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000060937,ENSRNOT00000077245 1 2 2 80 4 155535022 155535040 AGAGGCAAAGGTACCTCAG 59 155535082 155537199 AGGTCTTCACCTGCTTATAGC 60 NA Rattus norvegicus 81 Psme1 ENSRNOG00000019041 ENSRNOT00000025887 1 1 1 80 15 34258156 34258175 AAGGTGTTTGAGCTGATGAC 59 34258215 34258342 CCTCTCGGAGAAGTACTTAGAG 59 NA Rattus norvegicus 81 Psme1 ENSRNOG00000019041 ENSRNOT00000025887 2 1 1 80 15 34257216 34257328 ATGCCTTCTTAAAGGAGCCA 59 34257371 34257389 GATCAGGGACTGGGATGTC 59 NA Rattus norvegicus 81 Psph ENSRNOG00000000925 ENSRNOT00000001228 1 1 1 80 12 30522822 30525559 GAAATTCTACTTCAACGGTGAG 58 30525599 30525618 ATAACCTTTCCTTTCCCACC 58 NA Rattus norvegicus 81 Rnf151 ENSRNOG00000014127 ENSRNOT00000018964 3 1 1 122 10 14084380 14084794 TACAAGTCAAGTGCAAGAACG 59 14084278 14084296 CAGTGCAACCCTCATTTGG 59 NA Rattus norvegicus 81 Ncdn ENSRNOG00000011751 ENSRNOT00000016230 2 1 1 85 5 144772317 144772335 AAGACTGCTTCTAGCTGCC 60 144770961 144772268 GAGTTCCTTGGAGAGCTGG 60 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058,ENSRNOT00000086447 1 2 2 80 3 1542954 1542973 TGACACCTTCCAATACACCT 59 1542412 1542911 AGGGTGAATGAGGATCTGC 59 NA Rattus norvegicus 81 Cwc15 ENSRNOG00000008490 ENSRNOT00000011855 2 1 1 81 8 12996848 12998015 CGATCCTCTCACAGATGAGG 60 12998058 12998077 TAGCTCTGCAAGAAGAGCTG 60 NA Rattus norvegicus 81 Coil ENSRNOG00000000244 ENSRNOT00000037693 2 1 1 80 10 76328920 76328939 AATAGAAGCTCTGAGAGCCA 58 76328981 76329126 TACTGGATTCTGGATCACCG 59 NA Rattus norvegicus 81 Slc38a7 ENSRNOG00000012007 ENSRNOT00000061498 2 1 1 80 19 9629493 9629511 TTGCAGTCTACACCTTCGG 60 9629551 9629775 CCATGACAGCTATAATCTTGTCC 59 NA Rattus norvegicus 81 Prkag2 ENSRNOG00000009085 ENSRNOT00000067183 2 1 1 80 4 6782221 6782240 CCTTCTTTGCTTTGGTAGCC 60 6782283 6784491 TGAGCATTCCTACGAAGCT 59 NA Rattus norvegicus 81 Rheb ENSRNOG00000050578 ENSRNOT00000071737 1 1 1 80 4 6827592 6852037 ATCGGTCTGTGGGAAAGTC 59 6852078 6852099 TTTCTATGGTTGGATCGTAGGA 59 NA Rattus norvegicus 81 Olr1292 ENSRNOG00000052895 ENSRNOT00000073166 1 1 1 60 15 36287618 36287637 CTCAGAGAAGCCAGAACTCC 60 36287577 36287600 GATCAGATAGATTCCAGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sssca1 ENSRNOG00000012736 ENSRNOT00000017034 3 1 1 83 1 221088499 221089050 GATAAAGATAACCCGGCTCTG 58 221088436 221088454 GGCAGGCTCTGTAGTAGAG 59 NA Rattus norvegicus 81 Ehhadh ENSRNOG00000001770 ENSRNOT00000002410 1 1 1 80 11 82955826 82955844 CAGAAAGCTGGATCAGACC 58 82955888 82959740 GATATCAGCACCTGCACAG 58 NA Rattus norvegicus 81 Arhgap19 ENSRNOG00000048166 ENSRNOT00000071417 2 1 1 80 1 261028859 261030153 TCAGAAACTCTTTAAGGCCC 58 261028798 261028817 TTTGACACTTGAGTTCTGGA 57 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000052138,ENSRNOT00000016221 2 2 2 80 10 13989410 13989430 CTGCCTCTGTTCATTATCACC 59 13988307 13989368 GTTTCGCATCAGCTTCCAG 60 NA Rattus norvegicus 81 Ndufb10 ENSRNOG00000014568 ENSRNOT00000019624 3 1 1 80 10 14090730 14090748 ATCACGGAATGCAAAGAGG 58 14090549 14090686 TTGGTCCACTTTGAAGTCC 58 NA Rattus norvegicus 81 Kctd1 ENSRNOG00000016467 ENSRNOT00000061504 2 1 1 80 18 6473785 6473803 CTGTAAGGCGTTCTTCCAG 58 6473719 6473742 TTGCCTATGGCTTTGTTCTC 59 NA Rattus norvegicus 81 Tpd52l2 ENSRNOG00000015122 ENSRNOT00000020373 3 1 1 80 3 177005790 177007776 CCATAAAGTCTAAGGTTGTGGG 59 177007817 177007835 ATGTCTGGTCACCACTTCC 59 NA Rattus norvegicus 81 LOC289035 ENSRNOG00000027702 ENSRNOT00000033636 1 1 1 181 13 51218518 51218661 CCATTCCAGTTTCTATGGATCC 59 51220572 51220590 ATTAGGGATGCCAGGACTC 59 NA InUTR Rattus norvegicus 81 Psma8 ENSRNOG00000030363 ENSRNOT00000044541 2 1 1 101 18 6177593 6177947 TGCTTGAAGTTGTGCAGTC 59 6181324 6181345 CCTCCAATTCAATTTCTTTGGC 59 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000091596,ENSRNOT00000055285 2 2 2 80 7 144868673 144868691 GAAACTTTGGAGGCAGGAG 59 144868735 144868943 CATAGCCACCTTGGTTTCG 59 NA Rattus norvegicus 81 Mbnl3 ENSRNOG00000002487 ENSRNOT00000043258 3 1 1 80 X 138404768 138435158 ATGATTCACTAAAGGGTCGGT 59 138404708 138404729 TTTCTAGCTGCGACTTTAAGTG 59 NA Rattus norvegicus 81 Ptchd3 ENSRNOG00000046946 ENSRNOT00000074372 3 1 1 80 10 111032517 111033361 CTGGAAGACATAGAGGTGGT 59 111033403 111033422 AGGAATCACAGTCTTGGAGG 59 NA Rattus norvegicus 81 Ada ENSRNOG00000010265 ENSRNOT00000014151 2 1 1 80 3 160119592 160119610 GTGAAGGATGGCATTCACC 59 160119450 160119549 GAGTATGTCCACAGCCTCTC 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165,ENSRNOT00000012102 1 2 2 80 5 126664809 126666441 TCCTTGAGGGTATGAAGCAG 59 126664748 126664769 CAAGACTAAGCACTTTCTTGGG 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165,ENSRNOT00000012102 3 2 2 80 5 126664810 126666442 CTCCTTGAGGGTATGAAGCA 59 126664749 126664769 AAGACTAAGCACTTTCTTGGG 58 NA Rattus norvegicus 81 Hist1h2ah ENSRNOG00000049649 ENSRNOT00000013790 3 1 1 61 17 43632620 43632638 AGAAGACACGCATCATCCC 60 43632662 43632681 GTTGAGTTCCTCATCGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015057.1 ENSRNOG00000060518 ENSRNOT00000077306 3 1 1 85 14 46529354 46529372 GATCCCTACAACTCGGTGG 60 46525534 46529306 GTTGGATTGTTCACCCACAC 60 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 3 2 2 80 15 34297863 34297883 ATATCCTAGAGCACCTACACC 58 34297922 34298325 GAAGAAGCAAGCTAGGTAAGTC 59 NA Rattus norvegicus 81 Ascl5 ENSRNOG00000033391 ENSRNOT00000048033 3 1 1 72 13 52887807 52887825 CTACGATGCCTACACTGGG 60 52887861 52887879 GAACGGGTAGTCGTAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 1 2 2 81 4 153937143 153937890 CTTCTGGTCACTGAGGGTG 60 153937932 153937953 AGAGGAAGAGTAGGCATATTCC 59 NA Rattus norvegicus 81 Vom1r8 ENSRNOG00000051757 ENSRNOT00000080437 1 1 1 60 1 60117818 60117839 CATGGCAGTTGGAATCATACTC 60 60117857 60117878 AGAGAAGTTTCCCAGAATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm17a ENSRNOG00000007040 ENSRNOT00000009398 1 1 1 80 13 52125100 52126071 ACAGTTTCCTAATGGCCCT 59 52125038 52125056 TCTCCAAATGGTGAGGACG 59 NA Rattus norvegicus 81 LOC683156 ENSRNOG00000031461 ENSRNOT00000047872 1 1 1 91 17 2824680 2826818 TTTCGAAACAAATCCCAGGC 60 2824608 2824626 GGGATCTTCTGAGTGTGCT 59 NA Rattus norvegicus 81 Spata4 ENSRNOG00000048035 ENSRNOT00000071331 1 1 1 80 16 39968853 39968872 ACAATTCACTGTAAGGCTGG 58 39968683 39968813 GCTTCTAATTTCTTGATGGGTG 58 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 3 2 2 87 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108087 25108106 GGGTTGGCTACTTGATTGAG 59 NA Rattus norvegicus 81 Gatad1 ENSRNOG00000008613 ENSRNOT00000067376 3 1 1 87 4 27654890 27656990 ATATAATAGGGCCAGAGGAAGAC 59 27657032 27657055 CTTGACTTGAAATACTCAGAAGGG 60 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 3 2 2 85 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939448 198942665 TGAATACATCCACCATGTTGGA 60 NA Rattus norvegicus 81 Acp2 ENSRNOG00000013594 ENSRNOT00000018620 1 1 1 80 3 80026837 80026858 GTCTACAATGGTAAACAAGCCC 60 80026893 80027030 GACTGAGAAATTCCCATTATCTTCC 60 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 2 1 1 71 7 12419019 12420968 AGTTTGACTGAGACCCAGC 60 12418966 12418984 GTATTTCCGGAAGCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Has1 ENSRNOG00000010994 ENSRNOT00000014824 3 1 1 81 1 59725408 59725426 GTAGCCTTCAATGTGGAGC 59 59724878 59725365 TTCTGTATAGACCCAGAGGAC 58 NA Rattus norvegicus 81 Mir205 ENSRNOG00000035520 ENSRNOT00000053643 2 1 1 60 13 112233348 112233367 GTCCTCCTGTCCTTCATTCC 60 112233307 112233326 TCACTCCACTGAAATCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910,ENSRNOT00000013937 2 2 2 80 4 28654583 28655945 GGGAGAAGGTCCATATTGC 58 28654521 28654540 TGATAGGACATTACACCAGC 57 NA Rattus norvegicus 81 Olr737 ENSRNOG00000052463 ENSRNOT00000088256 1 1 1 60 3 79050613 79050632 TTCATCACTATCCCTTTGCC 58 79050572 79050590 GGTCACAGAAGTAGTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 3 3 3 89 12 31589111 31589892 GACAGATCATCAAGGTATATGGAG 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Fam222b ENSRNOG00000029570 ENSRNOT00000045107 3 1 1 81 10 65402021 65413041 CTTCAGAAATGGGACACTACAC 59 65413083 65413101 CCTTCTTAGCATACGCGTC 59 NA Rattus norvegicus 81 Nr2e1 ENSRNOG00000050550 ENSRNOT00000075151 1 1 1 80 20 47292441 47292462 TGTTCTAGGAATAGCACAATGG 58 47291994 47292403 GTGTTATCACTATTCATGCCAG 57 NA Rattus norvegicus 81 Olr677 ENSRNOG00000051514 ENSRNOT00000087979 2 1 1 60 3 77882364 77882385 GTACTGAAGGACGACTTAAAGC 59 77882325 77882346 AAGACAACAACTGTAATGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vmp1 ENSRNOG00000003967 ENSRNOT00000005658 1 1 1 80 10 73952306 73952326 GCTGAACCAGATGATGAAGAG 59 73930084 73952265 TCGTGATGCAAAGTCTTGTG 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575,ENSRNOT00000029842 3 2 2 80 11 72801684 72801702 AACCGTGATGTATGGAGCA 59 72799838 72801641 GCTGTCATGATAAACCTGCC 59 NA Rattus norvegicus 81 Pabpc1l2a ENSRNOG00000022267 ENSRNOT00000029100 2 1 1 60 X 73895231 73895251 ATATGTCAACTACCAGCAACC 58 73895191 73895211 GTCAAAGTTCATGGTCTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rlf ENSRNOG00000027921 ENSRNOT00000046906 2 1 1 80 5 140116183 140116201 GGCAGTTTGGTGTCATAGC 59 140112256 140116140 CAGCATCTTGTGCTTCAGTC 60 NA Rattus norvegicus 81 RGD1560987 ENSRNOG00000022882 ENSRNOT00000032787 1 1 1 80 14 51439113 51439131 GTCCTGCAGATGAAGGAGG 60 51439173 51439194 CATCTGAAAGTCAAGGTTGCC 60 NA Rattus norvegicus 81 Rexo4 ENSRNOG00000027867 ENSRNOT00000042289 2 1 1 81 3 5503486 5503505 TCTGTTCCTTGAACATCCGA 59 5502659 5503443 CCGTGCACTCTTTACTAGAC 58 NA Rattus norvegicus 81 Atp13a3 ENSRNOG00000001724 ENSRNOT00000002350 1 1 1 80 11 73957898 73962704 AGATGAAATGGAGATACATGGC 58 73962745 73962763 CCACCAGTACAAATCACCC 58 NA Rattus norvegicus 81 Olr87 ENSRNOG00000021290 ENSRNOT00000039822 3 1 1 60 1 168391425 168391446 CGTTACATTCACATTCTCTTGG 58 168391464 168391485 CTGGATTTAAACAAGGAGGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.2 ENSRNOG00000051293 ENSRNOT00000076241 1 1 1 60 X 73976840 73976858 CTCTACCATAAACAGCGCC 58 73976881 73976900 TCATGCATCTTAATGGTCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr463 ENSRNOG00000060217 ENSRNOT00000082357 1 1 1 60 3 73235750 73235770 ATGGCCCTGATTAAGATTGAC 58 73235786 73235810 GACTGCTGAGAAAGAAATACATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0718.1 ENSRNOG00000051198 ENSRNOT00000076206 2 1 1 60 X 70844287 70844305 CAAGTCCAAGAACCACACC 59 70844327 70844347 CTTGATGCCATTTCTGTACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 2 2 2 84 6 137210241 137212039 GAGGTCTTCGAAAGAACCA 57 137212087 137212105 TGATGGAACAACCTTCACC 58 NA Rattus norvegicus 81 Klhl12 ENSRNOG00000004193 ENSRNOT00000005832 2 1 1 80 13 51310750 51310768 GAGATATGCAGACAGCTCG 58 51310810 51311117 AGCCATCATATCCTCCTAGAC 58 NA Rattus norvegicus 81 Yipf1 ENSRNOG00000010512 ENSRNOT00000014091 2 1 1 80 5 126934340 126935831 GACTTGCAGTTTGAAGAATTCG 59 126935871 126935890 GTCCTCGATGTTTATCGTGG 59 NA Rattus norvegicus 81 MGC116121 ENSRNOG00000015546 ENSRNOT00000020856 1 1 1 80 18 16443211 16443230 GCAGGCTCTACAAACATCAG 59 16443272 16445025 AGATGTAGGTGTTCTGACGG 59 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000013443 3 1 2 83 3 6790704 6797057 AAGGTGATAACCGGGTCTG 59 6797103 6797122 TCATGAAGTCCACCATGGAC 60 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000077226 3 1 2 85 1 198112416 198116488 GAATTAGAGGAGGCATTGCTG 59 198112351 198112369 ATCGGCTCAATGTAGTGGG 60 NA Rattus norvegicus 81 Krtap14l ENSRNOG00000042680 ENSRNOT00000064058 1 1 1 60 11 28735601 28735621 TCAGATCCCTGAATTGTGGAG 60 28735561 28735582 TAGGTTCTAGACCCATAACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021022.1 ENSRNOG00000029425 ENSRNOT00000043688 3 1 1 81 13 53721473 53721491 TCAGAACAAGAGTCAGGGC 59 53720752 53721429 CCCTGTCTACTCGGTAAAGG 59 NA Rattus norvegicus 81 Nr5a1 ENSRNOG00000012682 ENSRNOT00000017651 3 1 1 90 3 23000501 23006367 CAGCCTCGATGTGAAATTCC 59 23000430 23000449 ACACAAGGTGTAATCCAGCA 60 NA Rattus norvegicus 81 Vrk1 ENSRNOG00000005274 ENSRNOT00000036035 2 1 1 80 6 129871214 129878424 TTGTGAAAGTGGAACCCAG 58 129878468 129878486 TTTGCTCTGGTTTAGCAGC 59 NA Rattus norvegicus 81 Olr1568 ENSRNOG00000046589 ENSRNOT00000074815 3 1 1 60 11 85031635 85031654 CTTACACCTATCTACGCCCA 59 85031674 85031695 ACTGCAAGAATCTTATCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360344 ENSRNOG00000031848 ENSRNOT00000052021 1 1 1 72 6 138736059 138736185 AAAGGTGTCCAGTGTGAGG 60 138736005 138736023 GTTTCATGGACCTTCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Mrps17 ENSRNOG00000000926 ENSRNOT00000001229 1 1 1 81 12 30572267 30572285 AAAGTAAGAGCGACCAGAC 57 30571161 30571179 CGTCATGAGCAAAGTAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Olr299 ENSRNOG00000031394 ENSRNOT00000043726 1 1 1 60 1 213011971 213011990 GTACATCCACTGTTCTTCCC 58 213011930 213011949 GAAATGTGGCTGCTCTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737,ENSRNOT00000036366,ENSRNOT00000083068 2 3 3 82 5 59497113 59498121 ATACTACCAGGAGAGCAATGG 59 59498164 59498183 TACTTTCAGGCTCTGACTGC 60 NA Rattus norvegicus 81 Lad1 ENSRNOG00000009144 ENSRNOT00000012801 3 1 1 83 13 52655326 52655345 TATCTTCACCCACACTCACC 59 52655391 52656199 CTTTCTTGAGGCTCATCCG 58 NA Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 2 2 2 81 9 121712376 121712396 GGTCTACGGGATAATAATGCA 58 121710266 121712333 TTCTTCTGGTCTGATCCCA 58 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000057362,ENSRNOT00000080701 3 2 2 80 5 126864665 126864683 GGGACAGAAGTGATTCTGG 58 126864727 126876027 AAAGGTTTCTGGATTCCCG 58 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 3 2 2 80 4 57760338 57762692 GATATACGGACAGGCAATGG 58 57762733 57762753 TCTGTGCTATAGATGTAGCCA 58 NA Rattus norvegicus 81 Tmem222 ENSRNOG00000008564 ENSRNOT00000011357 3 1 1 80 5 151462822 151464121 GGAAGTATGTCAGTGTTGGAG 59 151462762 151462782 GACTGATGGTCAGGATAATGC 59 NA Rattus norvegicus 81 Thpo ENSRNOG00000050172 ENSRNOT00000073743 3 1 1 96 11 82849544 82851448 AAACCCAGACGGAACAGAG 60 82851508 82851526 GAGGGTTCCAACTGTCCTC 60 NA Rattus norvegicus 81 Dtna ENSRNOG00000016671 ENSRNOT00000045224 2 1 1 80 18 14552988 14580662 CAGAAGAAATGCAACTTGCAC 59 14580704 14580722 GTCCAGGTTGTTCAAAGCG 60 NA Rattus norvegicus 81 Rfesd ENSRNOG00000012810 ENSRNOT00000017098 3 1 1 83 2 2778984 2779002 TGTCCATGGCAGAGAAGTG 60 2778827 2778937 GGTCCTCCAGAATGGTAGC 60 NA Rattus norvegicus 81 Slc7a9 ENSRNOG00000012344 ENSRNOT00000016919 1 1 1 80 1 91732462 91732483 CACATGCTTAAAGTGCTATCCT 59 91732519 91733423 GGCTATTATGCCATAGAATACGAG 59 NA Rattus norvegicus 81 Scyl1 ENSRNOG00000023668 ENSRNOT00000032387 2 1 1 80 1 221117974 221117994 TTAAGACCATTCGAAGCTTCC 59 221117671 221117933 CGTCCTTCTCTATTTCTGCC 58 NA Rattus norvegicus 81 Ankrd1 ENSRNOG00000018598 ENSRNOT00000025258 1 1 1 80 1 254732464 254733438 CTGCGATGAGTATAAACGGAC 59 254732404 254732423 GCCTCCATTAACTTCTCCAC 58 NA Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000082321 3 1 2 135 20 3935572 3935590 GCATGAGCAGAAGTCAGGA 60 3936956 3936974 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Lats2 ENSRNOG00000056343 ENSRNOT00000087978 2 1 1 80 15 37950248 37950750 TACTACCAGAAAGGGAACCAC 59 37950188 37950206 ACAACGACAGTTGGAAACG 59 NA Rattus norvegicus 81 Iqcf1 ENSRNOG00000037289 ENSRNOT00000056391 2 1 1 96 8 115193214 115193611 TGAACAATGGATGAGGAGCA 60 115193670 115193688 CTGAGGACAGATCAGCTGG 60 NA InUTR Rattus norvegicus 81 Tmem44 ENSRNOG00000001726 ENSRNOT00000002353 3 1 1 80 11 73747257 73747275 TGAATACCTCCTTCAGGCC 59 73747315 73748650 GACAGAATGATGATAGCAAGGTC 59 NA Rattus norvegicus 81 Olr1382 ENSRNOG00000050905 ENSRNOT00000060972 2 1 1 60 10 12817528 12817552 GAGTTGATGATTAATACAGAGGGAG 59 12817492 12817511 TCAGAATGCAAACAAATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phgdh ENSRNOG00000019328 ENSRNOT00000056173 1 1 1 80 2 200491752 200491770 AGAGGAGATCTGGCCTCTC 60 200491254 200491708 CTGTCATTGAGCAAGCCTG 59 NA Rattus norvegicus 81 Pck2 ENSRNOG00000018536 ENSRNOT00000025260 1 1 1 80 15 34221724 34221744 AACTGAACAAGGAGTCCTCTG 60 34221783 34221882 CGATGGCTTCTTGTCTATTGTG 60 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000057729,ENSRNOT00000013459 1 2 2 80 5 129070496 129071684 AGGAAATATTGATGCTGCTGTC 59 129071725 129071743 CACATGTGGTGAAACTGCT 59 NA Rattus norvegicus 81 Vom2r29 ENSRNOG00000038497 ENSRNOT00000040441 3 1 1 81 1 74257794 74257813 GAGAGTCATCTGCAACAGGT 60 74257854 74265851 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 LOC499781 ENSRNOG00000039315 ENSRNOT00000020660 3 1 1 80 3 11816312 11816330 CAGGAGGGTGAATACAAGG 57 11815905 11816268 GATCTCTTTCCTCAGCCTG 57 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 1 3 3 80 6 34056249 34056356 CCATTTCTTATCAAGTGGGCTG 60 34056397 34056415 TGGCTACCAGACAACTGAG 59 NA Rattus norvegicus 81 Micu2 ENSRNOG00000011168 ENSRNOT00000084698,ENSRNOT00000015233 2 2 2 80 15 38217676 38219484 TACGATCCTCACAAAGCCTC 60 38217615 38217639 CTCTCAATCATCTCATTACCATCTG 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 3 2 2 80 4 86223630 86230710 CCTGTGTTCTTGCACAGTC 59 86230751 86230772 TCAATTTCCTCTAAGTGCTCCT 59 NA Rattus norvegicus 81 Tap2 ENSRNOG00000000455 ENSRNOT00000000527 3 1 1 83 20 3996989 3998847 ATTCTCTGTTGGGAGCTCC 59 3998894 3998912 CGTATGCGAAGGTTGATCC 59 NA Rattus norvegicus 81 Fam20a ENSRNOG00000003969 ENSRNOT00000005367 1 1 1 80 10 97973038 97974980 CTCCCAGATTGTGAAACCC 58 97972976 97972994 GGTTTGAACATGGCTTTCC 58 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076025,ENSRNOT00000091894 3 2 5 213 8 39437202 39437220 CCAGCTCTGACAATGATGG 58 39404784 39422108 AAAGAGGGTGCCTGTACAC 60 NA DesignRelaxed Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000057404,ENSRNOT00000006624 1 3 3 80 15 109779704 109780217 CCAACTTTATGATTTGCTGGGA 59 109779645 109779666 ATAGAAATGCAAGAGCAGATGG 59 NA Rattus norvegicus 81 Clec1a ENSRNOG00000060460 ENSRNOT00000091602 2 1 1 80 4 163200651 163200669 CTCACTGAAACTCTGCAGC 59 163197086 163200608 AGGACTGCATCTATGTCCTC 59 NA Rattus norvegicus 81 Mmrn1 ENSRNOG00000024986 ENSRNOT00000030320 3 1 1 80 4 91001029 91001052 CACTCATGGCTCTAATGTAAACAG 60 91001089 91003597 GACTTCTGAGATCTTCGGGAG 60 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 2 2 2 80 1 80345146 80345805 AAGAGAATTGAGGTGATGGTG 58 80345086 80345105 CTCGTTGTACTTCTGGTTGG 59 NA Rattus norvegicus 81 Gnpda2 ENSRNOG00000002177 ENSRNOT00000002992 1 1 1 80 14 62638532 62638552 CAGAGTGTGATGCATTTGAGG 60 62633512 62638492 GACCATCTGGACCTATTCCTC 60 NA Rattus norvegicus 81 Olr1870 ENSRNOG00000045610 ENSRNOT00000044955 2 1 1 60 7 9342383 9342403 CCTTAAACCATCAGTCAAGCA 59 9342422 9342443 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 2 2 2 80 16 24981004 24982623 GAAGGAAAGATTGAAGACGGA 58 24983634 24983653 TCCAGATGACTGTGAAACCA 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193,ENSRNOT00000033863 1 2 2 80 3 172801150 172802361 CTCTAAAGGATATTTCTCCAGCTG 59 172802399 172802418 ATAGTCCAAACCCATCAGCA 59 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696,ENSRNOT00000002006 2 2 2 80 12 29026479 29026497 GCCTCTCATCCAGAATGTC 58 29026541 29028104 AAGGGATCCCACTTCTCTG 58 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907,ENSRNOT00000088674 3 2 2 80 14 44657491 44657510 TGCCAGTGTCTTGTAAACCT 60 44657550 44665283 AGTCATCGTCTTCATCTGTCTC 60 NA Rattus norvegicus 81 Mfsd11 ENSRNOG00000000247 ENSRNOT00000000264 1 1 1 80 10 105803882 105804162 CCCAGATTTCAGAGAATGACAG 59 105804203 105804221 GAAAGAACAGAACGGTCCC 59 NA Rattus norvegicus 81 Mfsd11 ENSRNOG00000000247 ENSRNOT00000000264 2 1 1 80 10 105803884 105804166 CAGATTTCAGAGAATGACAGAAGG 60 105804204 105804223 GAGAAAGAACAGAACGGTCC 59 NA Rattus norvegicus 81 Pon1 ENSRNOG00000008902 ENSRNOT00000011823 3 1 1 80 4 30260769 30260787 TAAAGTCCGAGTGGTAGCA 58 30259270 30260727 GCGATATAGACATACTTGCCA 58 NA Rattus norvegicus 81 Pdlim1 ENSRNOG00000016166 ENSRNOT00000022000 1 1 1 80 1 259333225 259333243 TCTCCTCTAGTGACCGAGG 60 259328804 259333181 GATGTGCAGGACTTCTTGG 59 NA Rattus norvegicus 81 Reep1 ENSRNOG00000008481 ENSRNOT00000064772 3 1 1 87 4 99681305 99681326 GTCAAATGGATGATGTACTGGA 58 99681373 99696933 AGAATGGAAACCAGCAAAGG 59 NA Rattus norvegicus 81 AABR07037412.1 ENSRNOG00000030999 ENSRNOT00000049138 1 1 1 60 X 20359642 20359661 CATCAAGCACTCAAAGAGCA 59 20359601 20359621 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glt1d1 ENSRNOG00000000961 ENSRNOT00000064526 2 1 1 80 12 32698465 32709793 AGCAATCAGAGATCGACCA 59 32698403 32698422 AAGGATCCTTCACTGGTCTG 59 NA Rattus norvegicus 81 Pcdhb12 ENSRNOG00000033719 ENSRNOT00000043846 3 1 1 60 18 30511592 30511612 CACTGTACCTAGTCATTGCCT 60 30511634 30511652 AGCACTACAGACAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC094516.1 ENSRNOG00000057064 ENSRNOT00000082938 3 1 1 60 15 28128233 28128256 CTACTGTAACGAGATGATGAAGAG 59 28128275 28128293 GTTCATGGACTTGCACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dut ENSRNOG00000007221 ENSRNOT00000009549 1 1 1 80 3 117516841 117516859 TGGGTGCTATGGAAGAGTG 59 117518879 117524588 TCATCTATGACACCGGCTC 59 NA Rattus norvegicus 81 Dut ENSRNOG00000007221 ENSRNOT00000009549 3 1 1 80 3 117516847 117518841 CTATGGAAGAGTGGCTCCA 59 117524573 117524594 TAATCTTCATCTATGACACCGG 58 NA Rattus norvegicus 81 Olr937 ENSRNOG00000049098 ENSRNOT00000050023 2 1 1 60 7 8809966 8809987 AATTCTGAAATTCCCTTCTGCC 59 8809927 8809945 GTGTGAGTAACAGGTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362687 ENSRNOG00000043109 ENSRNOT00000063929 1 1 1 90 6 142371781 142371800 CAAAGCATGGTTTACTTGCA 58 142371689 142371731 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 1 2 2 80 10 15196440 15196460 ACGTACTCCGAATTTATGCAG 59 15196650 15196743 TCTGAACTTCGAGTTGTCTG 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000091182 2 1 4 144 20 3824224 3824832 GCCCTCAGATTAACTCCAC 58 3824940 3824958 ATTGCACAAAGTCGTTTGC 58 NA Rattus norvegicus 81 Aplf ENSRNOG00000043059 ENSRNOT00000041234 2 1 1 80 4 119548347 119548367 CATGGATGTTAGCAGGAAGTC 59 119544664 119548307 TCTGGATGGCATCCTTATCTC 59 NA Rattus norvegicus 81 Pcmt1 ENSRNOG00000014330 ENSRNOT00000019623 3 1 1 80 1 1750802 1750824 TCTAACCCTTACATGGATTCTCC 60 1746389 1749371 TAGTGCATATGCATGCATGTG 60 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000050297 1 1 2 60 6 139293540 139293558 CAAATGGACAGTCTGAGGT 57 139293581 139293894 AATTTGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000050297 3 1 2 60 6 139293542 139293561 AATGGACAGTCTGAGGTCTG 59 139293581 139293896 GAAATTTGTGTCTGTTGCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Txndc12 ENSRNOG00000008090 ENSRNOT00000010700 1 1 1 80 5 128473273 128473294 GCCCTGAAATCATCAATGAGAG 60 128473334 128475138 TCATCCCTTGAACAACTTGC 59 NA Rattus norvegicus 81 Chrna9 ENSRNOG00000002484 ENSRNOT00000003382 1 1 1 80 14 43885837 43888358 ATTGTCCTATACAACAAGGCTG 59 43885778 43885796 GATGAGCCCATCATATCGC 58 NA Rattus norvegicus 81 LOC498368 ENSRNOG00000002191 ENSRNOT00000002982 1 1 1 90 14 46052423 46053140 CAAAGCTATCTCTTTGATCCAG 57 46052354 46052372 TGACAGTGTCATCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Fam172a ENSRNOG00000013844 ENSRNOT00000041541 2 1 1 80 2 5335504 5411544 GTTGAACTGATGATCCAACGA 59 5411583 5411604 CACATTGTGAACAGAGTCTGTC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 3 4 8 80 1 226463307 226463325 CAAGAACTCCTTGGAGACG 58 226463369 226467009 CTGTCTAGGTCGTTGATGG 57 NA Rattus norvegicus 81 Trps1 ENSRNOG00000024998 ENSRNOT00000050774 2 1 1 80 7 90263417 90276510 TGATGTACAGGTCACTTCAGG 60 90263357 90263377 AAATACTTGGTGTTGCCTTGG 60 NA Rattus norvegicus 81 Rab3b ENSRNOG00000008001 ENSRNOT00000010645 3 1 1 84 5 128557931 128557955 GGGAATAAATGTGATATGGAAGAGG 60 128557996 128567621 AGAAGTCAAACCCAAGTTGC 59 NA Rattus norvegicus 81 Amotl1 ENSRNOG00000008990 ENSRNOT00000061616 2 1 1 80 8 13089939 13089959 TAGTTTCCACCACTTTCACAC 59 13089561 13089620 TGACAACTTAAGGCTTTACCC 58 NA Rattus norvegicus 81 Abca7 ENSRNOG00000012939 ENSRNOT00000064886 2 1 1 80 7 12748858 12748879 CTAGATCGTATCCTGAACAACC 58 12748712 12748819 GTTGTTGAACCAGATCTTGAG 57 NA Rattus norvegicus 81 AABR07065804.1 ENSRNOG00000049252 ENSRNOT00000068561 1 1 1 90 6 141866506 141866525 CAAAGCATGGTTTACTTGCA 58 141866414 141866456 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Doc2a ENSRNOG00000019920 ENSRNOT00000027022 1 1 1 80 1 198285421 198285439 AAGCCCATGGATTTCAACG 59 198285483 198285611 TAGCTTATTGGCCTTGCAG 58 NA Rattus norvegicus 81 Polr2d ENSRNOG00000016231 ENSRNOT00000021738 3 1 1 82 18 24570881 24572240 TTCCCAAAGAGTTCGAAACAG 59 24572284 24572302 CTCATTCTGCTGCTTTCGG 59 NA Rattus norvegicus 81 Itpkc ENSRNOG00000013945 ENSRNOT00000018696 1 1 1 80 1 84025323 84025341 AAGAAGACACAGGCTCTGG 59 84024719 84025284 GTACTTTCTTAGGATTCCAACGTC 60 NA Rattus norvegicus 81 Olr1174 ENSRNOG00000049712 ENSRNOT00000049066 2 1 1 60 8 20536091 20536114 TACTAGGTGTGATTCCTATGACAG 59 20536131 20536151 AAGGATGAGACAATCTGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565784 ENSRNOG00000029415 ENSRNOT00000047111 2 1 1 115 10 14543235 14543254 TATGAACAGTGTCCTGTGCT 59 14543411 14543429 CAGACTGAACTGGAGACCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625,ENSRNOT00000073341 1 2 2 80 4 156986032 156986357 TCTGTTGTCTGACTCCCTG 59 156985970 156985988 GGGTCAATGGATGTAGGGT 59 NA Rattus norvegicus 81 Spata31a5 ENSRNOG00000018202 ENSRNOT00000024504 3 1 1 82 17 2421261 2423289 AAATTTCACCAGGAAGCCTC 59 2421198 2421219 CATCGTTCCTACAATGATTCCT 58 NA Rattus norvegicus 81 Tas2r108 ENSRNOG00000012195 ENSRNOT00000016232 2 1 1 60 4 68657645 68657663 CCATATTCAATCGCTGCCT 58 68657687 68657705 GGGCTCTCAGATTCTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000055957 2 1 2 96 10 70370602 70370620 AGACAACCACAGAGCTCAC 60 70374940 70374958 AGCATACTCAGCTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ccnd3 ENSRNOG00000050258 ENSRNOT00000074217 2 1 1 104 9 15406466 15406919 CTGTGCCACAGATTACACC 59 15406380 15406398 TCTGCAGACATAGAGCAGG 59 NA Rattus norvegicus 81 Jun ENSRNOG00000026293 ENSRNOT00000011731 3 1 1 62 5 114012475 114012495 GCACAGCTTAAACAGAAAGTC 58 114012433 114012451 CTGCGTTAGCATGAGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511,ENSRNOT00000056172,ENSRNOT00000086835 1 3 3 80 2 200762115 200762133 AGGAGAAAGAACTGCAGGA 58 200760406 200762072 TCTGCAGCTTAGAGAATTCC 57 NA Rattus norvegicus 81 Socs5 ENSRNOG00000028504 ENSRNOT00000020337 1 1 1 60 6 10674726 10701120 TCTCGCTCTTCTAATCAATGG 58 10701139 10701160 CACCTGTATTTGAAGTTGTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Socs5 ENSRNOG00000028504 ENSRNOT00000020337 2 1 1 60 6 10674726 10701121 TCTCGCTCTTCTAATCAATGGA 59 10701139 10701160 CACCTGTATTTGAAGTTGTTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rpf1 ENSRNOG00000015969 ENSRNOT00000021705 2 1 1 80 2 252379291 252380943 GCTCTTGGTGATAAGGCTC 58 252379229 252379248 GTCTACTGTGGTCTCATCGT 59 NA Rattus norvegicus 81 Crispld1 ENSRNOG00000017773 ENSRNOT00000024199 3 1 1 80 5 689515 689533 CATGACACTCATGTTCGGA 58 689076 689473 AACAATCTGAGACATCTGCTG 59 NA Rattus norvegicus 81 Rhobtb3 ENSRNOG00000012414 ENSRNOT00000016838 3 1 1 80 2 2665689 2665707 ACTGGGAGCTACCTATCTG 58 2661441 2665646 AAATACTCCAACACTCCTCC 57 NA Rattus norvegicus 81 Colec11 ENSRNOG00000008373 ENSRNOT00000011290 1 1 1 80 6 47858947 47859430 AGAACCTGGTATTCCATGTG 57 47858886 47858904 GTTGTCAGTTGAGTGACCT 57 NA Rattus norvegicus 81 Rn60_X_0770.1 ENSRNOG00000048710 ENSRNOT00000073878 3 1 1 60 X 76998205 76998223 AATGATGAGAGTTGCCTCC 57 76998246 76998265 CTGTTCTCGTGTGAAACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011,ENSRNOT00000085516 2 2 2 80 18 24869738 24870604 AAGATTCTGCAAGAGCTACCT 59 24870643 24870664 ATACAGATACATCACTGCTCGG 60 NA Rattus norvegicus 81 Hpdl ENSRNOG00000018143 ENSRNOT00000024393 1 1 1 60 5 135676373 135676394 ATAGATGCTTCTGAAGGAATGG 58 135676334 135676352 AAGCTTCAGGAGGAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam111a ENSRNOG00000012067 ENSRNOT00000016152 1 1 1 80 1 229013597 229013616 GCAAATCACAGAAGATCCCA 58 229013659 229016611 GCTCTTCTTTGGGAACCTG 59 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 3 2 2 80 4 57805012 57805033 TTTATCAGAGTGCTATCAACCC 58 57803190 57804973 TATTTCTGCCCTTTGGAAGAC 58 NA Rattus norvegicus 81 Oxt ENSRNOG00000021225 ENSRNOT00000028829 3 1 1 133 3 123106839 123107080 ATATGCGCAAGTGTCTTCC 58 123107177 123107195 CAGGTAGTTCTCCTCCTGG 59 NA Rattus norvegicus 81 P2ry6 ENSRNOG00000019270 ENSRNOT00000050227 1 1 1 113 1 165974712 165975734 ATGAGACAGATTCTCCAAGCA 59 165974619 165974637 AAATCCTCACGGTAGACGC 60 NA InUTR Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000085222 2 1 2 141 10 104953151 104953169 TCACAGTGACCTTGGAGAG 59 104953274 104978643 CTTGAACCTGTGACTGGGA 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000010906,ENSRNOT00000077770 1 2 2 80 6 135696413 135696431 TGTAAATACCGAGAGGCCA 58 135696473 135701451 ATCCGTGTCTTCATGTTTCTG 59 NA Rattus norvegicus 81 Olr931 ENSRNOG00000047264 ENSRNOT00000044977 1 1 1 60 7 16405069 16405089 ATATTCTTGGGAGGCACAGAG 60 16405106 16405129 CAATATAGTGGTCATAGGACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219,ENSRNOT00000079599 1 2 2 80 7 114466647 114468700 CAGACCAATCACTATCAGATCTC 58 114466589 114466607 CTGACCTGGGTAAATGCTG 58 NA Rattus norvegicus 81 Rn60_17_0348.1 ENSRNOG00000059621 ENSRNOT00000086900 1 1 1 60 17 34712152 34712170 AACATTGTCACCTGGAGAG 57 34712110 34712129 CTTGAGCACATTGAATCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_17_0348.1 ENSRNOG00000059621 ENSRNOT00000086900 2 1 1 60 17 34712113 34712131 TGCTCGATTCAATGTGCTC 59 34712071 34712092 CTTCTGAAACTACTTCTTGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hic2 ENSRNOG00000051458 ENSRNOT00000079595 3 1 1 94 11 87994886 88016688 AGGCACATGAGGTAACCAG 59 87994810 87994828 GAAACCATGTGAGCAGCAG 60 NA InUTR Rattus norvegicus 81 Tbc1d15 ENSRNOG00000003889 ENSRNOT00000067907 3 1 1 80 7 58196796 58196815 AGAGCAGCTATGAAGCAGAG 60 58192938 58196753 TTGGAGCATCTCCATTGGT 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 3 2 3 80 17 9838224 9838350 CAATTGTCTGTTATGACCTCAC 58 9838391 9838409 CTTCTAAACTGCGGAGCTC 58 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000021946 3 1 3 86 17 9831363 9831509 CTGGAGAAACGGAGGAGAG 59 9831557 9831577 ATATCGGGTATGGTCAACTCC 59 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713,ENSRNOT00000035907 1 2 2 80 9 15661308 15661327 CCATCTCACAGTACCACCAG 60 15656268 15661268 CTTAAAGAAGACCTTGCCACAC 60 NA Rattus norvegicus 81 Rpp25l ENSRNOG00000059653 ENSRNOT00000082496 3 1 1 60 5 58096484 58096502 GTGAATGTGGCTACCAACC 59 58096442 58096461 CTGGAACTAGGTATGGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco4c1 ENSRNOG00000022711 ENSRNOT00000033958 1 1 1 80 9 104324530 104324548 GCCATTGGCTATGTGTTGG 60 104323055 104324490 CTCAGTCAGATCTGAACTTTGTC 59 NA Rattus norvegicus 81 Slco4c1 ENSRNOG00000022711 ENSRNOT00000033958 2 1 1 80 9 104321013 104321034 AGTACTTCCTTCCAACATATGG 58 104319816 104320974 CCTCATCAAATTCTTCACAGC 58 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000042425 2 1 2 80 1 86618088 86618109 CATTCACAGGAACATCATGGAC 60 86613191 86618051 CAATAGAAAGCTGTGGGAATCTG 60 NA Rattus norvegicus 81 Dlx5 ENSRNOG00000010905 ENSRNOT00000014946 3 1 1 92 4 32389642 32391482 CCAGCCAGAGAAAGAAGTG 58 32389568 32389589 AAGCTGGAATAAATAGTCCTGG 58 NA Rattus norvegicus 81 Olr960 ENSRNOG00000057263 ENSRNOT00000075430 3 1 1 60 7 6691534 6691555 TAATTATCTTCCTCACCCTGCT 59 6691495 6691515 CGGAGAAAGAAGTACATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crip3 ENSRNOG00000018613 ENSRNOT00000061503 1 1 1 80 9 16932882 16932900 GCCCTCCCTACTTGAAGAC 60 16932695 16932840 CCTTCTCAGCGAAATAGACAG 59 NA Rattus norvegicus 81 Olr1029 ENSRNOG00000047357 ENSRNOT00000048223 3 1 1 60 7 7753187 7753207 CTTAAACCATCAGTCAAGCAG 57 7753147 7753168 AGGTATTGAGCACAGAAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gypc ENSRNOG00000029939 ENSRNOT00000046369 3 1 1 94 18 25314266 25316763 ATCATTGCAGCTGTGATCAC 59 25314191 25314209 TAGTAAGTGCCCTTGTGCC 60 NA Rattus norvegicus 81 AC094643.2 ENSRNOG00000053040 ENSRNOT00000079128 3 1 1 61 7 11181618 11181636 GTACCCAGCTGGATACTCC 59 11181659 11181679 ATGACTGCATAAGATCTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr157 ENSRNOG00000017252 ENSRNOT00000023170 1 1 1 60 1 169616219 169616237 TATGTGGCTCTCACTTCCC 59 169616258 169616279 GGTTATATTGCCCATGATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl5 ENSRNOG00000006331 ENSRNOT00000010409 1 1 1 80 8 85263851 85278865 TCTATGAGTTGGTGACAGGT 58 85278908 85278926 TATCTGATTCTCCTGCGCT 58 NA Rattus norvegicus 81 Il11ra1 ENSRNOG00000015068 ENSRNOT00000020885 1 1 1 80 5 58155048 58155067 CAATGTGACTGAGGTGAACC 59 58155108 58155667 GGATCAGGACGTAAGATCCTC 60 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000074951 1 2 3 89 4 61825563 61825583 CTGATCCGGTTCCATATAGAG 57 61825632 61826190 GTCAAAGACCTGAATGTTCTC 57 NA Rattus norvegicus 81 Rabgap1 ENSRNOG00000009402 ENSRNOT00000013378 1 1 1 80 3 21721500 21721518 CCAGGCAAGGAGATGAGAC 60 21721559 21724207 TCCCATTCCCTACAATCTTGAG 60 NA Rattus norvegicus 81 Shisa6 ENSRNOG00000029012 ENSRNOT00000057509 1 1 1 80 10 53015253 53037187 GATGAACATCCACAGGGCT 60 53015191 53015212 ATGGTTTCTCTTTCACAGTGTG 59 NA Rattus norvegicus 81 Rpl31l3 ENSRNOG00000029926 ENSRNOT00000049211 1 1 1 60 7 35549959 35549980 AGAAAGCATAATGAGGATGAGG 58 35549920 35549944 GCATGTAAGTTACCAGTATGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gfra3 ENSRNOG00000020309 ENSRNOT00000027544 1 1 1 83 18 27493701 27493719 CACCCTATGGACATCCTCG 59 27493504 27493654 CATGGCAGTCCCAATTAGC 59 NA Rattus norvegicus 81 Cdc73 ENSRNOG00000003258 ENSRNOT00000004495 1 1 1 80 13 60479242 60484211 CCACGAATTGAGGATGAAGAG 59 60479182 60479203 GATTCCTTCTTTATGGCCTTCC 59 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 2 2 2 80 2 203832412 203832430 AACAATACCTGGACGAGGC 60 203832474 203844311 CTGAAGCTTTGTCACTGGC 60 NA Rattus norvegicus 81 Cd83 ENSRNOG00000018092 ENSRNOT00000024458 2 1 1 82 17 24431080 24433050 TTCTGAAGGTGACAGGATGTC 60 24433094 24433112 AGAGAAGAGCAACACAGCT 59 NA Rattus norvegicus 81 Il2 ENSRNOG00000017348 ENSRNOT00000023327 3 1 1 102 2 123851702 123851721 CTTACAGGTGCTCCTGAGAG 60 123849149 123851552 TTTCAATTCTGTGGCCTGC 59 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 1 2 2 80 16 48341957 48342373 CAGTGGATTCAGGAACGAG 58 48341895 48341914 CCAGAAGATGTCAGTCATCC 58 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 2 2 2 80 7 37141469 37141490 AGTGAGAAGCTGATGGATAAGG 60 37141530 37142621 TTCCTTCAACTGCTCTTCCA 59 NA Rattus norvegicus 81 Rrp36 ENSRNOG00000017836 ENSRNOT00000024010 2 1 1 80 9 16624468 16625485 CTGAAGAAATCTGAGCAGCG 59 16625527 16625546 GAAACTCTCCAGCTTCTTGC 59 NA Rattus norvegicus 81 Dppa5 ENSRNOG00000000199 ENSRNOT00000000215 3 1 1 92 8 85712341 85712359 TTATGGCTCTTGCAACCAC 59 85711844 85712286 TTGAGCATTCCTCTTTCCTG 58 NA Rattus norvegicus 81 Tas2r139 ENSRNOG00000028135 ENSRNOT00000037220 2 1 1 60 4 71512701 71512719 CAACCCAGCAACTATTGGA 58 71512740 71512761 CAAGTGTTAGGATCAAGATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7b ENSRNOG00000035636 ENSRNOT00000053759 2 1 1 66 7 126590630 126590649 GGGTGAGGTAGTAGGTTGTG 60 126590674 126590696 GGTTGTATAGTTATCTTCGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plk1 ENSRNOG00000018815 ENSRNOT00000025629 1 1 1 80 1 192125320 192125474 CAGATTAATTTCTTCCAGGACCAC 60 192125511 192125531 CCTCTTCTCGTTGATGTAGGT 59 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000084062,ENSRNOT00000009666 2 2 2 80 6 76196146 76196167 CTTACATCTGTAGCTGTCAGAG 58 76196206 76196664 GGAATCCAGTAGTTTGTCAGG 59 NA Rattus norvegicus 81 RGD1563835 ENSRNOG00000033603 ENSRNOT00000042756 2 1 1 60 11 64472077 64472096 CAAGTTTATGAAACCCGGGA 58 64472119 64472137 TTTGTATCCGGAGTAGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559995 ENSRNOG00000032335 ENSRNOT00000040010 2 1 1 60 7 69982377 69982400 CTTACCGAGGTCTTAATTTATGGC 60 69982340 69982358 GAAGCATCCATTTAGCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp1 ENSRNOG00000013994 ENSRNOT00000019519 3 1 1 80 1 21804403 21804423 GTCCCATGCATAAATGTTCCT 59 21804465 21805664 CTCTGTTTAGTCTTGGCGG 58 NA Rattus norvegicus 81 Rit2 ENSRNOG00000017568 ENSRNOT00000023874 3 1 1 82 18 23881309 23881329 CGTCACACCTATGAAATTCCC 59 23701160 23881268 CCTTCTTCTGTAGAAACCTGAC 59 NA Rattus norvegicus 81 Kat2a ENSRNOG00000018364 ENSRNOT00000055250 2 1 1 80 10 88617703 88617809 AAGGTCAATTATACCAGATGGC 58 88617644 88617662 ATGGGTGGTCTCATATCGG 59 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 3 2 2 84 7 12607671 12608826 AACTACATCCAGCAGGTCTC 59 12607606 12607624 GGAACACAGTCACGTACCA 60 NA Rattus norvegicus 81 Rn60_10_0700.3 ENSRNOG00000014534 ENSRNOT00000019503 3 1 1 60 10 70329438 70329458 GTTTGTGATAGGTGTGAACCA 59 70329478 70329498 TGCATTGCTGACAATCTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnd2 ENSRNOG00000020698 ENSRNOT00000028089 1 1 1 80 10 89377294 89377313 TGTTTGAGAACTACACTGCC 58 89377354 89378161 AAGAGGAACCTGAAGTATCCC 59 NA Rattus norvegicus 81 Rn60_1_0437.1 ENSRNOG00000055098 ENSRNOT00000088838 3 1 1 60 1 43662399 43662421 CGGAAAGAATGGTTATATCCCTG 59 43662440 43662459 TTCTGCCTGAATGGAATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r52 ENSRNOG00000033494 ENSRNOT00000042249 1 1 1 80 4 156607327 156610914 ACACCACAATCAGACTCCT 58 156607265 156607283 GGTTTCCCTTCAACAGGTG 59 NA Rattus norvegicus 81 Zfp367 ENSRNOG00000027234 ENSRNOT00000036287 3 1 1 84 17 1662978 1662997 AGAGAAGAGCCAACAGACAC 60 1655387 1662931 TCTCCCAGTACTTTGCCAG 59 NA Rattus norvegicus 81 AABR07066782.1 ENSRNOG00000050818 ENSRNOT00000073333 3 1 1 94 9 16094773 16094985 ATGATTTCGAAGTCAGGAAAGC 59 16094700 16094718 CTCATTCCCAGGTGAGTGG 60 NA Rattus norvegicus 81 Ifitm6 ENSRNOG00000036645 ENSRNOT00000054875 1 1 1 80 1 213817435 213818078 GTCTACTCTGTGAAGTCCAGG 60 213817375 213817393 TTTCTTGGCAGTTGAAGCG 59 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 2 2 2 80 5 134726695 134726713 CCCTTTGTAGGTCACTGTG 58 134726757 134727340 TTCGAACAGCTTGTTCTGG 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 2 2 2 80 18 27097239 27097258 ATCATTGAAAGTGGAGGTGG 58 27097299 27098769 TCTTAGGATTTGTCTGTGGTC 58 NA Rattus norvegicus 81 Agbl2 ENSRNOG00000008467 ENSRNOT00000011467 1 1 1 80 3 79641207 79643683 GAGGCTCAATGAGACACAG 58 79643726 79643745 TCTTTAGTCTTAGGGCTGGT 58 NA Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 3 2 2 90 5 4971313 4971333 ACTTAAAGAAAGCAGGAGGAG 58 4959566 4971263 AGGACAAACCAATACCTTGTG 59 NA Rattus norvegicus 81 RGD1566006 ENSRNOG00000028965 ENSRNOT00000046100 1 1 1 81 12 21891068 21891086 TTCCTGGAAGGAATCTGGC 59 21890711 21891023 TATCCTGCTGAGTTCCCAG 59 NA Rattus norvegicus 81 RGD1566006 ENSRNOG00000028965 ENSRNOT00000046100 2 1 1 83 12 21891069 21891088 ACTTCCTGGAAGGAATCTGG 59 21890711 21891023 TATCCTGCTGAGTTCCCAG 59 NA Rattus norvegicus 81 Prr11 ENSRNOG00000006198 ENSRNOT00000038296 1 1 1 80 10 74407797 74407817 AGCTGCAATAAACCTTTGGAC 60 74407507 74407758 ACTTCTAAACTCTGGGCTACAC 60 NA Rattus norvegicus 81 Ccdc149 ENSRNOG00000024454 ENSRNOT00000034411 2 1 1 80 14 60929134 60935582 AGGCAAACCAACAGAATCC 58 60935625 60935644 CCACAAACCAGAAACTTCCA 59 NA Rattus norvegicus 81 Amigo2 ENSRNOG00000007032 ENSRNOT00000009199 2 1 1 60 7 138705319 138705338 GCATTTAACACGGCTTTCAC 59 138705278 138705297 GTAGCACTAGGACGATACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499240 ENSRNOG00000013713 ENSRNOT00000055158 2 1 1 229 1 174344704 174344724 TTTCCAGAGGATGTCATTCAG 58 174339417 174343033 TTTAACTTCCTGACCCTGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Sike1 ENSRNOG00000017502 ENSRNOT00000024270 1 1 1 80 2 205490105 205490124 TGGTTGCTAAACAAGCAGTG 59 205490164 205491288 CGATCTGACTTTCAATTTCTGC 58 NA Rattus norvegicus 81 Hacl1 ENSRNOG00000019630 ENSRNOT00000026588 1 1 1 80 16 7745655 7745675 TTGTGATTGGTGGTTCTTCTG 59 7742029 7745613 ATCTGCAAGCTTCAACCTG 59 NA Rattus norvegicus 81 Hacl1 ENSRNOG00000019630 ENSRNOT00000026588 3 1 1 80 16 7728863 7731007 CCGTATCCAAGGAATTAGCT 57 7728802 7728821 GCAACTGTTCTTGAACATGG 58 NA Rattus norvegicus 81 Myl12a ENSRNOG00000015278 ENSRNOT00000021048 2 1 1 126 9 119328282 119332865 GCTGAGCAGGGATTTAACC 59 119328174 119328192 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 Mfsd7 ENSRNOG00000023937 ENSRNOT00000037459 2 1 1 80 14 2314766 2314784 CTCTGGGCATCCTAATAGC 57 2314828 2315268 AGATGCCAAGCATCATAGG 57 NA Rattus norvegicus 81 Fbln7 ENSRNOG00000017550 ENSRNOT00000023708 1 1 1 80 3 121421381 121423391 GATGCACCTCCAGTTTCCT 60 121423433 121423453 GTGGTCCACTAAGTACTTGCT 60 NA Rattus norvegicus 81 Palm ENSRNOG00000009760 ENSRNOT00000013762 3 1 1 80 7 12720096 12720114 ACATGAGGAAGCAGATGCA 59 12718296 12720055 CAATTTCTTTCTCGAGTCTGGT 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000085873,ENSRNOT00000077168,ENSRNOT00000091832,ENSRNOT00000089428,ENSRNOT00000092034,ENSRNOT00000024682,ENSRNOT00000079628,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 15 18 60 1 43507444 43507463 CTGCCTGTAATGTTCATGGC 60 43508250 43508268 TGAGGGTGCAATCTATGGA 58 NA DesignNoJunction Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 2 2 2 89 10 53576934 53579198 TCATCCAAGAATTCAGTCGGT 60 53579249 53579267 GTACACGTAGACCCACGAC 60 NA Rattus norvegicus 81 Mir145 ENSRNOG00000035474 ENSRNOT00000053597 3 1 1 64 18 56969954 56969972 TTTCCCAGGAATCCCTTGG 59 56969908 56969926 GCCATGACCTCAAGAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000080815,ENSRNOT00000028786 2 2 2 80 9 16754943 16754962 GCTGTTCAATCAGCTTCTGG 60 16755004 16755401 GTTCTGGCCATTTCAGTAGC 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884,ENSRNOT00000083693 2 2 2 80 13 57310022 57312742 AGACTGCAGGATTATTATGTGG 58 57312780 57312801 CATTGGAATCTGTAGCACTCTC 59 NA Rattus norvegicus 81 Olr1058 ENSRNOG00000050142 ENSRNOT00000041157 3 1 1 60 7 16395124 16395144 CCTTAAACCATCAGTCAAGCA 59 16395163 16395184 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 1 2 2 85 9 82597335 82597353 CTACCATGAAGCCCAGTCC 60 82597400 82597740 CATGAGTGAGACCTTGAAGGT 60 NA Rattus norvegicus 81 Copz1 ENSRNOG00000036835 ENSRNOT00000065270 3 1 1 83 7 144917805 144918406 GGACGGATAGTGAAATCGC 59 144918450 144918471 TGCCGATCACATAGAAATAGAG 58 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949,ENSRNOT00000042314 1 2 2 80 8 22163104 22163122 GCAGAAGTGCTTTGATGTG 58 22161441 22163062 TGATACTTGGCATCAGTAGGA 58 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000,ENSRNOT00000022801 1 2 2 118 5 59021757 59021775 ATTCAGCTCGTAGAGGAGG 58 59021554 59021677 TCAATGACCTTCATTCCTCTC 58 NA Rattus norvegicus 81 Yipf3 ENSRNOG00000018998 ENSRNOT00000025769 3 1 1 80 9 17119554 17119713 AGGTAGCAGATCAGATGTGG 59 17119493 17119512 TCAGGATGTCGATATTGGCA 59 NA Rattus norvegicus 81 Thoc3 ENSRNOG00000000104 ENSRNOT00000000116 1 1 1 80 17 10679512 10681676 AACATCCTCAGCTACCCAG 59 10681717 10681738 GTCAAACTTGATACAGATGCAG 58 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 2 2 2 82 3 152631147 152631165 CATGGACTTGAGCTATGCC 58 152631211 152635247 ACTGGAGTTCACCAAGGAC 59 NA Rattus norvegicus 81 Loxl3 ENSRNOG00000061373 ENSRNOT00000081196 1 1 1 80 4 113882789 113882809 CATGACATTGACTGTCAGTGG 59 113882849 113882983 ATTTGGGTTGATAACCACCTG 59 NA Rattus norvegicus 81 Ly6g6e ENSRNOG00000027157 ENSRNOT00000037482 3 1 1 121 20 5068172 5068190 GAGTGTCGGGAAGATGAGG 60 5068371 5068389 TAGGTAGTATGGCCCAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 1 2 2 80 2 93537550 93538048 ACCAGAATCAGAACATTGTCC 58 93538090 93538108 CACCCTTAGGATCTGTCCA 58 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767,ENSRNOT00000086682 2 2 2 80 9 112408367 112408387 GCCATCACCATAGAGAATTCC 59 112408424 112409504 GTCTTCTTTCCTTCTCACTTTCTC 60 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 2 2 2 80 10 88282226 88282427 TATGCAGATGACATGGATGC 58 88282165 88282183 GTCCATGTGCATATCCAGG 58 NA Rattus norvegicus 81 Wdr7 ENSRNOG00000018387 ENSRNOT00000025325 1 1 1 80 18 59345596 59345615 AGTCACAGAATTGCAGTTGG 59 59345656 59387345 GTGGATTGTCTGACATTTCCC 59 NA Rattus norvegicus 81 Slc30a9 ENSRNOG00000002246 ENSRNOT00000065550 2 1 1 80 14 42486647 42489571 TTGGGAAACACAAAGCCAC 59 42486585 42486603 GCAAATAGCGACCATCACC 59 NA Rattus norvegicus 81 Akap8 ENSRNOG00000006559 ENSRNOT00000008827 2 1 1 80 7 14328449 14329405 TCCATTCAAAGGGATTGGC 58 14328387 14328405 GGAATCAGCATGTCACAGG 59 NA Rattus norvegicus 81 Pik3r5 ENSRNOG00000023428 ENSRNOT00000032785 3 1 1 80 10 55076801 55077057 TATCAAGGCTTCAGGTCCG 59 55077096 55077119 ATAATCTGTAGTGTTAGAGGGACG 60 NA Rattus norvegicus 81 Sec62 ENSRNOG00000009057 ENSRNOT00000012240 1 1 1 80 2 116219352 116219654 GAACACGAGATGCATTCCT 58 116219290 116219308 TAGAGGTGTTGGTGTTTGG 57 NA Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 1 2 2 80 10 15490656 15491082 GAGGGCTAACAAGTCAGAG 57 15491126 15491144 TTGAAGCTGAGGAAAGGTG 58 NA Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 1 2 2 80 6 133578595 133578615 TAATGGACTCTGTGAAGAACC 58 133578656 133581249 GCCCGAATATCTATTTCGCA 58 NA Rattus norvegicus 81 Obsl1 ENSRNOG00000015346 ENSRNOT00000020673 2 1 1 80 9 82696896 82696916 TGACGATGGTGTCTATCTGTG 60 82696759 82696855 TTCAGGATGGGTCCTTTGAC 60 NA Rattus norvegicus 81 Smpd5 ENSRNOG00000037299 ENSRNOT00000056421 2 1 1 109 7 117352655 117352675 CAAAGGTCTATTATCCGTCCA 57 117352837 117353068 GAATATGTCCATCCTCAAGGG 58 NA Rattus norvegicus 81 Ctf2 ENSRNOG00000030907 ENSRNOT00000041840 2 1 1 102 1 199169469 199173868 CAGACCTATCTCCAGTACCAG 59 199169387 199169405 TCTTGAAGGAGACAGCTGC 60 NA Rattus norvegicus 81 Tspan2 ENSRNOG00000023338 ENSRNOT00000035605 1 1 1 80 2 205191818 205191839 ACCATAATCAGTGTTAAGCTCC 58 205191877 205199575 GAATATCATGCCAAAGATCGTG 58 NA Rattus norvegicus 81 Pmpcb ENSRNOG00000012693 ENSRNOT00000017018 1 1 1 80 4 9911646 9911664 ACACGATCTGTCTCATGGT 58 9910527 9911605 TGCTCGATAAATTCATTCCTCC 59 NA Rattus norvegicus 81 Pmpcb ENSRNOG00000012693 ENSRNOT00000017018 2 1 1 80 4 9911645 9911664 ACACGATCTGTCTCATGGTC 60 9910527 9911605 TGCTCGATAAATTCATTCCTCC 59 NA Rattus norvegicus 81 Dok3 ENSRNOG00000013564 ENSRNOT00000018232 2 1 1 80 17 9639407 9640198 GAAGTTTGGCAAGAAATGCT 58 9640241 9640259 CTTTCTAGCCGAGCTACTC 57 NA Rattus norvegicus 81 Otop1 ENSRNOG00000028423 ENSRNOT00000050367 3 1 1 80 14 77236438 77238543 ACATCTCGCTTTGGATTCC 58 77236376 77236397 CAAAGCCAAAGACAATTTCCTC 59 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216,ENSRNOT00000067281,ENSRNOT00000078274,ENSRNOT00000064755 2 4 4 80 5 58713125 58713145 GGGAGAAGTCTCTATTCAGGT 58 58713187 58713649 GCTGCTACCACTTTCACTG 59 NA Rattus norvegicus 81 Slc7a4 ENSRNOG00000001874 ENSRNOT00000002560 3 1 1 82 11 87447299 87447317 GTGGTGCTGTCTTTCTGTC 59 87446955 87447255 CAAAGGGATCTGGAAAGTGTC 59 NA Rattus norvegicus 81 Cdkn2c ENSRNOG00000008956 ENSRNOT00000012088 2 1 1 86 5 129351827 129351848 GAGCAACTTACTAGTTTGTTGC 58 129348491 129351781 AAGTTTCATAACCTGCAGCG 59 NA Rattus norvegicus 81 Tmem63b ENSRNOG00000019743 ENSRNOT00000026728 3 1 1 80 9 17719080 17719099 AGAAAGTGAATGAGAAGCCC 58 17719140 17719294 AGTCCTTTAGGATGATTGCTG 58 NA Rattus norvegicus 81 Lim2 ENSRNOG00000017681 ENSRNOT00000023858 2 1 1 105 1 98500403 98500421 CATTGGATGCAATACCGGC 60 98497609 98500334 TCCAGTATGCGATGCTCTC 59 NA Rattus norvegicus 81 RGD1307916 ENSRNOG00000042494 ENSRNOT00000064853 3 1 1 98 4 156944582 156944601 TCTCAGATGCCGATGTTCTC 60 156824501 156944521 TGAAGGAGACTTCTTGCCC 59 NA Rattus norvegicus 81 Nags ENSRNOG00000020879 ENSRNOT00000028332 1 1 1 93 10 90088328 90089099 AATCCTTGGTACTTCAAGCAC 59 90089154 90089172 CATAGGAGTCCCGGATGTC 59 NA Rattus norvegicus 81 Hsbp1l1 ENSRNOG00000059055 ENSRNOT00000078797 1 1 1 80 18 76752532 76752551 CCGAGAACCTACTTCAGGAG 59 76750699 76752492 TTCCCATTTCTTCCATTCTGAG 59 NA Rattus norvegicus 81 Mir141 ENSRNOG00000035577 ENSRNOT00000053700 1 1 1 60 4 157236416 157236434 ACTCTGAGTCCATCTTCCA 57 157236374 157236392 ACAGTGTTAGGAGCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054,ENSRNOT00000085535,ENSRNOT00000017568 1 3 3 80 16 49543723 49544914 GGTATTGTAGGTGCTGTGG 58 49543661 49543680 GTTGAGGTTACAGTCAGCAC 59 NA Rattus norvegicus 81 Anxa11 ENSRNOG00000010984 ENSRNOT00000014941 2 1 1 80 16 3870759 3870778 GACATCGAGAAGAGCATCTG 58 3869790 3870717 GTTCTTGAGGCATTTCACCA 59 NA Rattus norvegicus 81 Poldip2 ENSRNOG00000009252 ENSRNOT00000013100 2 1 1 80 10 65782065 65783386 AGACGGGACAGCTATTTCTC 59 65783429 65783447 GGTCATACAGTCTGGCCTG 60 NA Rattus norvegicus 81 Prp15 ENSRNOG00000028983 ENSRNOT00000045884 3 1 1 83 4 166222499 166224138 CAGGAAGCAGAACTTCAGAG 58 166224184 166224202 ATTAGCAGGTGGTCTTGGT 59 NA Rattus norvegicus 81 Ift81 ENSRNOG00000001294 ENSRNOT00000066952 2 1 1 80 12 39426050 39426070 CGCTTCTTAATAAAGCTGGAG 57 39426109 39428201 CTCTTCATACTGTTTGTTGGTG 58 NA Rattus norvegicus 81 Nmnat2 ENSRNOG00000027697 ENSRNOT00000038183 2 1 1 80 13 70519978 70524807 ACCTCATGAAGAGGGTGAC 59 70524851 70524869 GTTGTGGCTGTCCAATCAC 60 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 3 2 2 130 5 64673618 64673636 ACAGTCAGAATTCCACCCA 59 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Olr1509 ENSRNOG00000027806 ENSRNOT00000026926 3 1 1 60 10 60942173 60942192 ATAGAACCCAAACTCCACAC 58 60942132 60942152 CATCCAGCATAGACAAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365839 ENSRNOG00000048109 ENSRNOT00000074617 2 1 1 60 11 79548073 79548092 GCAGACCATGATTGAAGCTC 59 79548115 79548133 AAGTCGGAGCAAATACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifnl3 ENSRNOG00000026584 ENSRNOT00000035328 1 1 1 113 1 85236698 85236716 TGACACTGAAGGTCTTGGG 59 85236502 85236621 GAGGCTCTGTACAGGTCTG 59 NA Rattus norvegicus 81 AABR07010570.1 ENSRNOG00000058402 ENSRNOT00000072578 1 1 1 61 2 140805663 140805684 AGAGTCTAATCAGGAGGTTGC 59 140805707 140805725 ACCTGTTCTGTAGAGGGTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07010570.1 ENSRNOG00000058402 ENSRNOT00000072578 2 1 1 62 2 140805663 140805684 AGAGTCTAATCAGGAGGTTGC 59 140805707 140805726 CACCTGTTCTGTAGAGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07010570.1 ENSRNOG00000058402 ENSRNOT00000072578 3 1 1 62 2 140805663 140805684 AGAGTCTAATCAGGAGGTTGC 59 140805708 140805726 CACCTGTTCTGTAGAGGGT 58 NA DesignNoJunction Rattus norvegicus 81 AABR07064867.1 ENSRNOG00000051449 ENSRNOT00000082695 2 1 1 60 6 98665973 98665992 AATAGTAGCACTTTCCACGG 58 98665932 98665950 CGACGATATCTTGGTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr35 ENSRNOG00000024030 ENSRNOT00000036328 1 1 1 60 9 100137888 100137909 ATACAAATTGTAGCATCCTCCC 58 100137929 100137948 AAGTAGATGGTGAAGACGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-196b-1 ENSRNOG00000049663 ENSRNOT00000071351 1 1 1 60 4 82284900 82284920 TAGGTAGTTTCCTGTTGTTGG 58 82284860 82284878 TAATGAAGGCAGTGTCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgsl1 ENSRNOG00000026952 ENSRNOT00000029773 3 1 1 80 13 71260295 71260939 AAGGATTCAGACTCAAACAGC 59 71260235 71260255 ACGAGACATGTCTTCTTTCTG 58 NA Rattus norvegicus 81 Prps1l1 ENSRNOG00000032513 ENSRNOT00000052356 1 1 1 60 6 54418072 54418093 ACTTATCCCAGAAGATTACCGA 59 54418113 54418132 TTCTTAGTTACCACCTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idnk ENSRNOG00000019519 ENSRNOT00000026407 1 1 1 81 17 6889532 6889551 GATGCCGATGATTACCACTC 59 6887051 6889488 ATGGAATCCTGTCCTGGTC 59 NA Rattus norvegicus 81 Wdr54 ENSRNOG00000009324 ENSRNOT00000013128 2 1 1 88 4 113986909 113987022 ATGCTTCTTCAGTACAGGCT 59 113986542 113986560 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000085241 2 1 6 80 9 17341349 17341369 GAAACCATGAACTTTCTGCTC 58 17341411 17353781 TTGTCACATCTTGGCATGG 59 NA InUTR Rattus norvegicus 81 AC115158.1 ENSRNOG00000046391 ENSRNOT00000039829 1 1 1 91 6 76050501 76051997 CATCAACCCTCTCAGTGTG 58 76052051 76052070 CTCATCAATGGCATACTGGT 58 NA Rattus norvegicus 81 AC115158.1 ENSRNOG00000046391 ENSRNOT00000039829 2 1 1 92 6 76050501 76051997 CATCAACCCTCTCAGTGTG 58 76052052 76052071 ACTCATCAATGGCATACTGG 58 NA Rattus norvegicus 81 Cd27 ENSRNOG00000027466 ENSRNOT00000038023 3 1 1 80 4 157749935 157749954 AAACAACTGTCCAGACAGAC 58 157749721 157749892 TTCACAAGGAATGTCCCTG 57 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482,ENSRNOT00000002477,ENSRNOT00000002478 3 3 3 80 11 88831161 88831179 TGCAAGACGTCTTCAACAC 59 88831223 88846644 TTCCACTGCTCTGAGTTCC 59 NA Rattus norvegicus 81 Gabarap ENSRNOG00000017417 ENSRNOT00000023724 1 1 1 90 10 56601349 56601367 TACAAAGAGGAGCATCCGT 58 56601421 56601980 TTTCCACTATCACCGGGAC 59 NA Rattus norvegicus 81 Olr889 ENSRNOG00000033344 ENSRNOT00000047673 1 1 1 60 7 4183097 4183117 AAAGTTTGTGCCATCCTTGTC 60 4183057 4183078 GTATGATAATGATCAGCAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995,ENSRNOT00000067135 3 2 2 80 13 69928458 69929808 CTACATTGAGGGTGGACTG 57 69926060 69926080 GACTGTAGGAGCTTTATCTGG 58 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450,ENSRNOT00000067176 3 3 3 82 12 41205372 41205391 AGAGGAACTTCCTGAAGCAG 60 41205434 41208790 CTCCTTACACAGTTGGTACCA 60 NA Rattus norvegicus 81 Slc15a5 ENSRNOG00000007717 ENSRNOT00000010158 3 1 1 81 4 172030769 172044390 AGAGAACCATTGCTCCCTC 59 172030706 172030724 AAGATGGCAGTACAGCAGG 60 NA Rattus norvegicus 81 RGD1311863 ENSRNOG00000012872 ENSRNOT00000017405 2 1 1 80 1 234699018 234699037 ATCAGGAAATACTGCTGACC 57 234698235 234698975 TTCCATTGGCATCTTCTCC 58 NA Rattus norvegicus 81 Olr877 ENSRNOG00000043299 ENSRNOT00000066301 3 1 1 60 7 3450751 3450770 CACATCCACGTTTACTCCTC 58 3450710 3450731 GCTGATGGTCTTAATTCCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009978.1 ENSRNOG00000038552 ENSRNOT00000058810 3 1 1 78 2 119139955 119139973 AAGGTCACCTGGAAAGAGC 60 119139895 119139913 GAGCTTTCCGAAGACTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myadm ENSRNOG00000053450 ENSRNOT00000081980 1 1 1 133 1 64441131 64444181 GTTAAGGAAGCAGCCATGC 60 64441016 64441034 GATACTAGCTGCAGGAGGC 60 NA InUTR Rattus norvegicus 81 Olr1453 ENSRNOG00000029615 ENSRNOT00000040655 3 1 1 60 11 55475594 55475612 TACATGAGACCCAAGTCCC 58 55475636 55475654 TGTAGAAGGCAGACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307595 ENSRNOG00000011239 ENSRNOT00000014928 1 1 1 98 2 138194454 138194472 ATGCTTCTCAGTCAGCAGG 60 138194534 138197269 GATCAGAAATGTTCCCGGC 59 NA InUTR Rattus norvegicus 81 Tdgf1 ENSRNOG00000037171 ENSRNOT00000040840 3 1 1 89 8 119218168 119218186 TAACGACATTCGGGACCAG 60 119217674 119218118 AGCAACTTATTGCTCTGTATCC 59 NA Rattus norvegicus 81 Pdcd1 ENSRNOG00000049797 ENSRNOT00000074915 1 1 1 80 9 101309913 101319780 GTGGCTTCTAGAGGTCCTC 59 101309851 101309869 TTTGCTCCCTCTGACACTG 60 NA Rattus norvegicus 81 Wipi1 ENSRNOG00000003827 ENSRNOT00000005172 3 1 1 81 10 97888927 97888945 AGAAAGGCACCGAGATCTG 60 97881380 97888882 CAGACCAGCAGTCTCTGTC 60 NA Rattus norvegicus 81 Olr881 ENSRNOG00000043125 ENSRNOT00000065917 3 1 1 60 7 3804482 3804500 GTGATGTGTCTCCCTTCCT 59 3804440 3804458 ACCATCTGCTCAATGACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap14 ENSRNOG00000001567 ENSRNOT00000002132 1 1 1 60 11 28777180 28777199 ATCCCATGGTTTCCAGTCAG 60 28777139 28777157 CCCACCATTTAGGGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd7 ENSRNOG00000036674 ENSRNOT00000054934 2 1 1 80 10 110230914 110230933 TTGCTGTAAGCTTCTTCCTC 58 110230317 110230871 ACAGTTTCTTGATCTGCGT 57 NA Rattus norvegicus 81 A1cf ENSRNOG00000033195 ENSRNOT00000067643 2 1 1 80 1 250484315 250490613 CAACAGTATTAAACCAGGTGC 58 250490653 250490673 TCTTCTCGGTTACTGAAATGC 59 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631,ENSRNOT00000085414,ENSRNOT00000083623 1 3 3 86 16 10932306 10941154 CACTATCTCCCGGATCACC 59 10932238 10932256 TTGACTCCATCAATGGCCA 59 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 1 2 2 61 7 60316387 60316405 GAAGTTCTGCACTAGCAGG 58 60316430 60320003 CTGAGCCATACACATCCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 3 2 2 80 9 20215437 20215455 AGTTAGACGAAAGGGAAGC 57 20215498 20215933 AGTCCTTCACATTATCTGCG 58 NA Rattus norvegicus 81 Ankrd34b ENSRNOG00000040166 ENSRNOT00000061812 3 1 1 116 2 22006794 22013351 CACATCTCAGGTATTGATTTCTGAC 60 22013424 22013443 AAGTCTAGTGAGGCGAAGTC 59 NA InUTR Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 2 2 2 80 14 71870248 71870266 ACTAAGTGGTCTCAGCTGG 59 71870310 71872638 ATACCAGTCACCTCTTGCC 59 NA Rattus norvegicus 81 Glp2r ENSRNOG00000003683 ENSRNOT00000004946 3 1 1 80 10 54317356 54323260 CATCAAGCAAGTTACAGGATCG 60 54317297 54317317 AAGTCTTCCAGACACTTCTCC 60 NA Rattus norvegicus 81 Polr2f ENSRNOG00000011214 ENSRNOT00000015009 2 1 1 84 7 120384862 120389672 CTCTCCAGATTGCGATGTG 58 120389720 120389738 TTGAGTTCCTTCATGGCGA 59 NA Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 1 2 2 80 6 145783930 145783951 CACTGGGATTCTCATTCATCTG 59 145783991 145784399 AGCTGCTTCTGTAAGCTCTC 60 NA Rattus norvegicus 81 Krt39 ENSRNOG00000031422 ENSRNOT00000051080 2 1 1 80 10 87435469 87436117 TTGAGAGCCAACTATGAAGC 58 87435408 87435426 ATCCAGGATCTGCTTCAGG 59 NA Rattus norvegicus 81 Dsn1 ENSRNOG00000006236 ENSRNOT00000008254 1 1 1 80 3 153103212 153103661 GTCAGTACAGCTCAAGAAGAG 58 153103152 153103171 CTCTGTAGATGGAGCTTGAG 57 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183,ENSRNOT00000022382 3 2 2 80 1 277095777 277096807 CAACTTCTGCAGAAACCCAG 60 277096847 277096868 TACTCCCATTTCACCTTCTCAC 60 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 1 2 2 80 X 15100795 15100913 TACTCTAGAGGTGGTGGAGAC 60 15100953 15100973 CCCATACCCATATCCATAGCC 60 NA Rattus norvegicus 81 Gpd1 ENSRNOG00000056457 ENSRNOT00000087662 3 1 1 82 7 141373340 141373358 ATGCAAACACCCAACTTCC 59 141373402 141374715 GCCACTATATTCTTCAAGGCC 59 NA Rattus norvegicus 81 Slit3 ENSRNOG00000007377 ENSRNOT00000009714 3 1 1 80 10 20442002 20442022 CCTCTATGACAATCGGATCAC 58 20442063 20443905 GACAAGAGGTTTATGGTGGA 57 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 1 1 1 174 7 122160544 122162676 AAGGTCTAACTCCAGCACC 59 122162814 122162832 GACTTCAGAACGGTTAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Gna14 ENSRNOG00000014840 ENSRNOT00000020201 2 1 1 80 1 235336902 235339745 CTGCCAAATATTACCTGACGG 59 235339787 235339805 GAACACGAAGTACGTCCTG 58 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 1 2 2 80 7 70565893 70565911 ACACCACAGCAGAAGTACC 60 70565952 70566350 CACTGTTGTCTTGATCTTCTCC 59 NA Rattus norvegicus 81 Dctn2 ENSRNOG00000025481 ENSRNOT00000087495,ENSRNOT00000008120 2 2 2 80 7 70564752 70565870 CTGGAGACTATGAAATGCTTGG 59 70565910 70565929 CTTCATGCAGTAGTCGTTGG 59 NA Rattus norvegicus 81 Cds2 ENSRNOG00000021265 ENSRNOT00000028888 1 1 1 80 3 124930205 124930223 CTCCAAAGAAGACCTGGGA 59 124930267 124931051 ACATCACGTAGGAGAGCAG 59 NA Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 2 2 2 80 7 133457355 133457377 CTGCTAATCTCCTTAACATCCTG 59 133460969 133469106 TTTATCCTCCTCAGAAACTCCA 59 NA Rattus norvegicus 81 Acbd6 ENSRNOG00000003550 ENSRNOT00000004772 1 1 1 80 13 73239893 73255246 AGAAACAATCAGGGAAGAAGAC 58 73255285 73255305 TTGATGGCTTTGGTTATGTGG 59 NA Rattus norvegicus 81 Baz1a ENSRNOG00000006828 ENSRNOT00000009080 3 1 1 80 6 75800669 75800687 AAACATGGTGCTCTGTGAC 58 75800525 75800626 CCATCAGGAACAGTCTTGAG 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018928 ENSRNOT00000025586 3 1 1 94 1 84723296 84731823 GAGCCCAGAATTGGAAACAG 59 84723221 84723241 ATTGCTTTACCCTCTGTTTGG 59 NA Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000081775,ENSRNOT00000037589 2 2 2 96 3 149337642 149338103 TTGTCATCTACGGCATGGA 59 149337564 149337582 TGGAGCTGAAATGTCTGGA 59 NA Rattus norvegicus 81 Cggbp1 ENSRNOG00000000718 ENSRNOT00000000909 2 1 1 80 11 1909364 1911667 CTGGAAATTAAGCCGAAGAGC 60 1911709 1911727 GAACGATTTCTAGCAGGCG 59 NA InUTR Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695,ENSRNOT00000024526 3 2 2 153 9 100839074 100839093 AATTTGTACGCAAGACCCTG 59 100839837 100839855 AAGAATGCAGCCTTCAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Prss42 ENSRNOG00000031971 ENSRNOT00000051211 3 1 1 90 8 119065661 119066081 CATTGCATACACAGCCGAG 59 119066135 119066153 TCTGGATGGGAATCACCAG 59 NA Rattus norvegicus 81 Cytl1 ENSRNOG00000028108 ENSRNOT00000035427 2 1 1 83 14 77808016 77808037 CCGAAGTAGATATGCTGAAGGA 60 77806632 77807972 AGAGAAACACCAAGTCCCG 60 NA Rattus norvegicus 81 MGC114246 ENSRNOG00000039990 ENSRNOT00000061470 2 1 1 80 17 3927484 3927959 ATCCATATGAAGGGAAAGATGG 58 3927999 3928018 GTAGGGACACAAATCCTGTG 58 NA Rattus norvegicus 81 Cnppd1 ENSRNOG00000018325 ENSRNOT00000024975 3 1 1 80 9 82342642 82342743 TGTTTCTGATCTCCATGATGGT 60 82342583 82342604 CCCATTCATCATTGAAGACCTC 59 NA Rattus norvegicus 81 C1qtnf5 ENSRNOG00000007613 ENSRNOT00000010127 2 1 1 138 8 48443822 48443840 CTAGGAGTCTGTCAGCGAG 59 48443942 48444205 CTTGTAGTCTGTAGGCCCT 58 NA InUTR Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 2 1 2 96 4 39521392 39521410 AAGTCGAGATGTCGAAGCA 59 39522599 39526701 TACAGCTTTGTTCTTCTTGGTC 59 NA Rattus norvegicus 81 Efna5 ENSRNOG00000034177 ENSRNOT00000045096 1 1 1 80 9 110057267 110062673 CATTAGAACCAGCAGATGACAC 60 110057208 110057227 GTATCCTTGGTGTTTGTGCC 60 NA Rattus norvegicus 81 Gsg1 ENSRNOG00000008518 ENSRNOT00000011295 2 1 1 81 4 169036817 169036838 CAGAACCTCAACAGTGAATGAG 59 169027655 169036776 CCCTTCTGGAACTCCATCTC 60 NA InUTR Rattus norvegicus 81 Ilkap ENSRNOG00000020115 ENSRNOT00000027295 1 1 1 80 9 98519054 98520191 ATAGTCGGGCAATCCTGTG 60 98518992 98519011 TTGGATTGTGCTCTTTGCTG 60 NA Rattus norvegicus 81 Fgfrl1 ENSRNOG00000024207 ENSRNOT00000000037 3 1 1 87 14 2021990 2022009 GAAGACAGTGGCAAGTACAC 59 2021843 2021942 GAGTACGCTGGATTACATCCA 60 NA Rattus norvegicus 81 Crisp3 ENSRNOG00000013496 ENSRNOT00000018163 2 1 1 80 9 24078720 24082340 ACACTATACTCAGGTTGTTTGG 58 24082379 24082399 TATTTCAATGGTTGGTCAGGG 58 NA Rattus norvegicus 81 Fam195a ENSRNOG00000020029 ENSRNOT00000027170 1 1 1 92 10 15231453 15231698 GATTTGTGTCCGAAGCCTG 59 15231379 15231397 TCTCCACATACTGCACAGG 59 NA Rattus norvegicus 81 Arfgef1 ENSRNOG00000005703 ENSRNOT00000007766 1 1 1 80 5 8693412 8698132 CATCATTGTTGGAGACATGGG 59 8698174 8698192 CTGCCATCCTCTACAGCTC 60 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627,ENSRNOT00000084769 3 2 2 80 9 82375071 82375089 GGACAGTGAGATACAGGCT 59 82374880 82375028 TGTGTCTCATACCCTTCAGG 59 NA Rattus norvegicus 81 Lyve1 ENSRNOG00000026902 ENSRNOT00000030474 1 1 1 80 1 175673153 175673171 GGTTCTGGGACTGACTCTG 59 175672992 175673110 CATCCATAGCTGCAAGTCTC 59 NA Rattus norvegicus 81 Runx2 ENSRNOG00000020193 ENSRNOT00000061014 3 1 1 80 9 18718196 18737579 CAGATTACAGATCCCAGGCA 59 18737620 18737640 CATCTGGCTCAGATAAGAGGG 60 NA Rattus norvegicus 81 AABR07063995.1 ENSRNOG00000056931 ENSRNOT00000042029 1 1 1 60 6 59531323 59531342 ATCTCCAAGATTACCTGCAC 57 59531282 59531300 TGGCTGAGACTAAAGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 1 2 2 80 8 56236904 56239226 TGTTAGGGATAACTGGCTCC 59 56239269 56239287 CAATGAGTGGGTATGGTGC 59 NA Rattus norvegicus 81 Ppp3r2 ENSRNOG00000005368 ENSRNOT00000007290 3 1 1 80 5 64946098 64946119 ATATCCTTTGAAGAGTTCCGTG 58 64945782 64946059 TTGACCGTGATCTACAAACAC 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 1 2 2 80 10 56860221 56861092 GGAGAAAGAACTCAAGGATGG 58 56860161 56860179 CCTCGGATCACATTAGCTG 58 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 2 2 2 80 17 12643344 12653925 AAATTCCTGATCAGGGCCA 59 12643282 12643303 GCGATAGTGTAATACCTTCCCT 60 NA Rattus norvegicus 81 Ccdc38 ENSRNOG00000021892 ENSRNOT00000030985 3 1 1 80 7 34462732 34462753 AAAGAAATAACAGCACCGACTC 59 34462794 34462956 GTCTTCCTCCTAGGCTTCC 59 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 2 1 1 60 6 141715824 141715842 AGTTGTTGCTAAACTGGGT 57 141715652 141715802 TTCACCTCACACTGAATACCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911479 ENSRNOG00000045886 ENSRNOT00000072282 2 1 1 60 10 44959110 44959131 TGAAGACACATCCCAATATGAG 58 44959151 44959170 TATCAGCACAAGGACAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 1 1 1 79 16 50358467 50358485 TATCGTGGTGGACATCCTG 59 50340728 50358424 TATTCCCTGCGTTCCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tbx5 ENSRNOG00000001399 ENSRNOT00000001893 2 1 1 80 12 42104768 42104786 GGATGCGACAACTTGTCTC 59 42104828 42108028 AGTTCAGGATAATGTGTCCGA 59 NA Rattus norvegicus 81 Arrb2-ps ENSRNOG00000052437 ENSRNOT00000090505 2 1 1 60 20 4121320 4121338 ACCATTGTGAAGGAGGGAG 59 4121360 4121380 TGACCCTGTAGGATACTAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559724 ENSRNOG00000034203 ENSRNOT00000047882 3 1 1 60 6 75470255 75470273 AGCCTTCCTCACAAAGTCC 60 75470213 75470232 CAACTTGACTATGTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpgs1 ENSRNOG00000008296 ENSRNOT00000011010 3 1 1 70 7 12917637 12917655 GCCAATTTCCCAGACAGTG 59 12917585 12917603 AAATCCTCCTCGCTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abl2 ENSRNOG00000004305 ENSRNOT00000059524 1 1 1 80 13 74229006 74229025 TATGGAGAGGTTTACGTTGG 57 74229066 74230469 CTCCATGGTATCTTCCTTCAG 58 NA Rattus norvegicus 81 LOC100359978 ENSRNOG00000029776 ENSRNOT00000044381 2 1 1 60 6 142992902 142992923 CTCCAATAACCAAGCATTCCTG 60 142992863 142992881 ATATGTGCCAGTATCCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456,ENSRNOT00000063821,ENSRNOT00000088313,ENSRNOT00000045532 3 4 4 102 2 18521978 18521996 AACCCTTGTCGGAATGGAG 60 18516701 18521912 TCTCAGTGTCTTGTTCGCA 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854,ENSRNOT00000044081 3 2 2 80 11 24550690 24550709 CAAGTTTCTACACCAGGAGC 59 24548173 24550647 TCACTGCATGTCTCTTTGG 58 NA Rattus norvegicus 81 Olr59 ENSRNOG00000018606 ENSRNOT00000025097 1 1 1 83 1 167908342 167911398 AATTTCCAGGCTGTTCCTG 58 167908277 167908295 GTGAGTGAAGTTGCAGGAG 59 NA InUTR Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000091558 1 1 2 103 14 6783549 6786066 GGGAAAGTGTCACAAGCTG 59 6783464 6783482 CTGTTCCTTTACCCACCGT 60 NA Rattus norvegicus 81 Hist3h2bb ENSRNOG00000031790 ENSRNOT00000041187 2 1 1 60 10 45297087 45297105 TCGTCAACGACATCTTCGA 59 45297045 45297063 TTGTTGTAATGAGCCAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635,ENSRNOT00000015067 1 2 2 80 2 140316009 140322475 AAAGAAGAAAGTTGGCCGT 58 140315947 140315968 TTCTTCTTGACTCCTAACTCAG 57 NA Rattus norvegicus 81 Mns1 ENSRNOG00000057867 ENSRNOT00000077613 2 1 1 80 8 79062605 79064926 CAAGTACGAGCAAATGAAACG 59 79064967 79064986 TTCTCTTCCTTCAGTAGCCT 58 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000030518,ENSRNOT00000091264 2 2 2 102 6 26541887 26541905 ACCTGAGACGTTCAGACAG 59 26541632 26541736 CTCAGTTTACTTGAGAGTTTGACC 60 NA Rattus norvegicus 81 Irs1 ENSRNOG00000014597 ENSRNOT00000019579 2 1 1 81 9 88082227 88082245 TATGCCAGCATCAACTTCC 58 88034697 88082185 CATTTAGGTCTTCATTCTGCTG 58 NA InUTR Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000084053,ENSRNOT00000078412 1 2 4 80 20 12855160 12855179 GGGTTTGCTACCTATGAGAC 58 12854534 12855118 CATGATGTCTCCAAAGACCT 57 NA Rattus norvegicus 81 Lrpap1 ENSRNOG00000009313 ENSRNOT00000012665 2 1 1 80 14 80918806 80918827 TGCACTACAAAGAGAAGATCCA 60 80918863 80919328 GAAGGTTCTCATAACCTTCTTCAG 59 NA Rattus norvegicus 81 Mr1 ENSRNOG00000003522 ENSRNOT00000004694 2 1 1 85 13 72775689 72779719 CCTAGAAAGAACAGAACATCCAG 59 72775626 72775644 CATGAGCTCTGCAGAAGAG 58 NA Rattus norvegicus 81 Nostrin ENSRNOG00000006611 ENSRNOT00000067161 3 1 1 80 3 55393247 55393268 TTGAGTTGGAAGCAATAAAGCC 60 55393308 55396826 CCACTTCATTATCGAGCGAC 59 NA Rattus norvegicus 81 Vom1r50 ENSRNOG00000031734 ENSRNOT00000049387 3 1 1 60 9 52401035 52401054 GTGTATCTGAGCCTCATGGT 59 52400994 52401015 TGTGCCTATAGAGAATGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldob ENSRNOG00000006807 ENSRNOT00000086505,ENSRNOT00000009111 1 2 2 81 5 64810549 64810567 CTTCCAGCCTTGCTATCCA 60 64809168 64810505 ATAGGTACCAGCCCATTCTG 59 NA Rattus norvegicus 81 LOC100910708 ENSRNOG00000027433 ENSRNOT00000013133 2 1 1 91 4 62028075 62028096 TCTGATCCGGTTCCATATAGAG 59 62028145 62028704 AGTCAAAGACCTGAATGTTCTC 58 NA Rattus norvegicus 81 Lysmd2 ENSRNOG00000010642 ENSRNOT00000014301,ENSRNOT00000083410 1 2 2 85 8 82574859 82576117 AGAAGAGAACAGGGATGAAGAG 59 82576163 82576181 CTGTGATCTGGCTCAGTCC 60 NA InUTR Rattus norvegicus 81 Plp2 ENSRNOG00000039496 ENSRNOT00000045256 2 1 1 81 X 15679421 15680637 TGCTGAGATTATACTGTGCCT 59 15680680 15680698 CTCAATCACCGACAGGGAG 60 NA Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 2 1 1 60 10 55998318 55998338 ATCGTGACTGTAATGTCATCC 58 55998358 55998537 AATGAATCAGAAGGCTTGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 3 1 1 60 10 55998319 55998338 TCGTGACTGTAATGTCATCC 58 55998358 55998538 AAATGAATCAGAAGGCTTGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Gpr89b ENSRNOG00000000095 ENSRNOT00000000106 2 1 1 80 2 199020982 199021978 CCTACTTCCTCAGGAATGTG 57 199020921 199020942 TTATGATCATGTCCATGGTCTG 58 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000009513 3 1 2 86 6 105395476 105395494 GGCCTTCTATCATCTTGGG 57 105395544 105398067 ATCACATTGGTGTCTGAGG 57 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 1 2 2 80 9 27447842 27447861 TCCTTCACTACTTCGATGGC 60 27442411 27447802 GTTCTTCAAACTCTACTCCAGC 59 NA Rattus norvegicus 81 Sh3rf1 ENSRNOG00000010358 ENSRNOT00000013816 1 1 1 80 16 32090361 32091821 CGTCCCAGTGTATATGTTGC 59 32090300 32090318 AAACATCTCGCCTTTCCTC 58 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 3 2 2 80 5 59517452 59517782 ATTCTGGGAGTAGGCATCTC 59 59517391 59517409 CTGTATCAGCTTGGTCGAG 58 NA Rattus norvegicus 81 Zfp719 ENSRNOG00000033729 ENSRNOT00000024645 2 1 1 84 1 99507963 99510587 GGCAGTGGGTAAATTGCAG 60 99510634 99510653 GACTTCGTTGGTTGCATCAG 60 NA Rattus norvegicus 81 rno-mir-3542-1 ENSRNOG00000050396 ENSRNOT00000074009 3 1 1 68 17 9370881 9370900 ACTATGGTAGGGAGAGTGGG 60 9370931 9370949 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690326 ENSRNOG00000024508 ENSRNOT00000034403 1 1 1 80 4 165732693 165732711 CCTCCAGGATTCTTCTGGT 58 165732753 165734092 TTTCATCATCTTCATTGGCCC 59 NA Rattus norvegicus 81 AABR07055413.1 ENSRNOG00000049415 ENSRNOT00000071785 2 1 1 81 7 2300751 2300832 GAACAGGACTGTGTCTCTG 58 2300877 2300895 GAAGGCAGCTAGAGATGTG 58 NA Rattus norvegicus 81 Mirlet7i ENSRNOG00000035642 ENSRNOT00000053765 1 1 1 60 7 66802740 66802760 GTAGTAGTTTGTGCTGTTGGT 59 66802782 66802800 CTTGCGCAGTTATCTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306474 ENSRNOG00000005790 ENSRNOT00000007610 3 1 1 80 7 60308865 60308886 TAGCCGATACTGGTGTAATGAC 60 60306789 60308825 TTCTTCAGCAAAGCTTTGCA 59 NA Rattus norvegicus 81 LOC688459 ENSRNOG00000048967 ENSRNOT00000073595 2 1 1 83 9 23421369 23421387 CCTGAGATGTCCTCTGTGG 59 23421433 23424326 AATGTTCTTCACCACCAGTG 58 NA InUTR Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000085165,ENSRNOT00000027064 3 2 2 82 9 82638375 82638393 CGATACCAGATCACCCACC 60 82638434 82638607 GGATGGATGTAAACATTTCCTCTG 60 NA Rattus norvegicus 81 Mir154 ENSRNOG00000035600 ENSRNOT00000053723 3 1 1 60 6 133888588 133888609 GGTGCTTGAAGATAGGTTATCC 59 133888630 133888648 ACCGTGTATGATTCGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 1 1 2 122 16 85305322 85305427 GAGTCAAACTCCCAACACC 58 85299028 85299046 CTGGAGTAGCTGAGAGGTC 59 NA Rattus norvegicus 81 Gosr2 ENSRNOG00000003506 ENSRNOT00000005046 1 1 1 80 10 91742938 91745495 TCACCACTAACGACTCTGAC 59 91742877 91742895 CGTGGTGAATGTTCTGGAG 59 NA Rattus norvegicus 81 Hba2 ENSRNOG00000047321 ENSRNOT00000048977 2 1 1 80 10 15590131 15590150 ACCAACATCAAGAACTGCTG 59 15589955 15590088 AGCGAACATCCTCTGTAGG 59 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000035648 3 1 3 60 1 82832290 82832310 GAACTGTGTAACAATGCTGAG 58 82832161 82832269 GGGCTTTAACTGATAGGGAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1564345 ENSRNOG00000008594 ENSRNOT00000011359 3 1 1 109 4 23718021 23718040 ACCTCAGACCTCAAAGACAG 59 23717361 23717382 CCGATTATGGACGATGAAAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Trim24 ENSRNOG00000013251 ENSRNOT00000047954 1 1 1 80 4 65683904 65684275 TTCTCCCAGCATTTGTCAC 58 65684315 65684337 CTCTCAAAGACAAGATCTCTTCC 59 NA Rattus norvegicus 81 Fscb ENSRNOG00000032241 ENSRNOT00000046828 3 1 1 60 6 86220744 86220762 CCCTTGCAGAAGAGTCTCC 60 86220702 86220720 GGCATAGGAACCACATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mlxip ENSRNOG00000001255 ENSRNOT00000001690 2 1 1 80 12 38582268 38582985 ATATGCAGTATTTGGAGAAGCG 59 38582209 38582230 GTTCATCTACATCAACAGAGCC 59 NA Rattus norvegicus 81 Il17rc ENSRNOG00000027376 ENSRNOT00000037788 1 1 1 80 4 145433142 145433163 TTGGCTTCTTACTATACTGGGA 59 145433204 145433423 TGTTCTGAGGTCCAGTCAG 59 NA Rattus norvegicus 81 Rn60_1_1734.1 ENSRNOG00000036817 ENSRNOT00000031043 3 1 1 60 1 167162227 167162247 ACACAGGTTAACTCTGAAGAC 58 167162187 167162207 TTTCCCTAATAGCTTCCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 2 2 2 80 19 14552813 14553124 TTGATGAGTTCGACAAGATGC 59 14553166 14553184 TGGCAATGGAGATGGTCTG 60 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 3 2 2 125 7 117777670 117777880 GTTTGCAGGAAGCATACAC 57 117777969 117777987 GGCAATACAAGTTCTGGCT 58 NA Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 2 2 2 80 8 58089853 58089871 CCAGAGTTGGTTCACTGAG 58 58088770 58089811 TCTTGTTTAGAGTGTGCTTGG 59 NA Rattus norvegicus 81 Paqr8 ENSRNOG00000012830 ENSRNOT00000029696 3 1 1 135 9 27047648 27049825 TTCTACAAAGGTTGTCCTACTG 58 27049921 27049939 TCTTCCAGAATCTTGGGCA 59 NA InUTR Rattus norvegicus 81 Capza2 ENSRNOG00000056207 ENSRNOT00000090451 2 1 1 80 4 44952876 44952896 CATTTGCACAGTATAACCTGG 57 44952935 44955239 CATGTTCTGTTATCAAGACCTG 57 NA Rattus norvegicus 81 Hunk ENSRNOG00000002092 ENSRNOT00000002866 1 1 1 80 11 30642836 30647718 CGTTATCTGTCAGGGAAATCG 59 30647758 30647778 AGCTCTGCACTTCTCTATCTG 59 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 1 2 2 80 13 74796685 74796703 CAGCTCCAGTCCAAATGTC 59 74795830 74796641 TGCAAATCACTGTCAGTGG 58 NA Rattus norvegicus 81 Ankub1 ENSRNOG00000043466 ENSRNOT00000057909 2 1 1 89 2 147805170 147805188 GTGTCTACTGTCTCCGGAC 59 147800256 147805118 GAAGTGTTGTGCCGATATCC 59 NA Rattus norvegicus 81 Ldoc1l ENSRNOG00000021671 ENSRNOT00000039588 1 1 1 60 7 125465313 125465331 TACGCAGAACCTACAAGCC 60 125465271 125465289 GACGTCTTCCGGATTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ghrl ENSRNOG00000010349 ENSRNOT00000014103 3 1 1 89 4 145675334 145677246 AAATCAGGTTCAATGCTCCC 59 145675264 145675282 GAAGAAACTTTCCCAGGGC 59 NA Rattus norvegicus 81 C1qtnf6 ENSRNOG00000007300 ENSRNOT00000009551 2 1 1 96 7 119748143 119749936 CCTGAAAGGTGACAAAGGG 58 119748065 119748083 TTTGATACCCTGAGAGCCA 58 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756,ENSRNOT00000082008 2 3 3 86 3 14621396 14621414 TACGACACAGCTCTGTTGG 60 14616678 14621348 CTCAATGTACTTTCCCACAGC 59 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000091814,ENSRNOT00000018137 3 2 2 80 1 234412765 234416171 TTACTTCTGAAGTCAGGTTGC 58 234416210 234416231 CAGAACAGTGTTGTTTAATGGG 58 NA Rattus norvegicus 81 Rpl26-ps1 ENSRNOG00000032777 ENSRNOT00000046460 2 1 1 60 7 121943092 121943111 ATCCCTTCGTGACTTCTGAC 60 121943051 121943072 TGAGATGGTGCATTGAAATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792,ENSRNOT00000010549 2 2 2 103 7 13014383 13014401 GGCAGTGTCTGAAAGACAG 59 13014722 13015358 GTATACAGAAGGCCAATACAGG 58 NA Rattus norvegicus 81 Olr1083 ENSRNOG00000061480 ENSRNOT00000088783 2 1 1 60 7 13587700 13587721 TCAGTTAAAGGGAAGTACAAGG 58 13587661 13587681 AGGAGACAATGGAAAGGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6pdx ENSRNOG00000056728 ENSRNOT00000080887 3 1 1 80 X 156291028 156291046 CCAGATCTACCGCATTGAC 58 156291088 156291334 AAGATCCTGTTGGCAAATCTC 59 NA Rattus norvegicus 81 RGD1310212 ENSRNOG00000026582 ENSRNOT00000036473 2 1 1 60 7 15362658 15362677 TGGCTAGGGAAATCTGTCTG 59 15362617 15362636 GTACTTGTCTTTGGGATGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 1 2 2 80 8 116843564 116843582 CAAGGTGGACTACTTCGAC 58 116841762 116843522 GAAGCAAGGTCATCTTTAAGG 57 NA Rattus norvegicus 81 Slc26a1 ENSRNOG00000000041 ENSRNOT00000000047 2 1 1 92 14 2052583 2053343 GCTTTATCAGGTCCTCATGG 58 2053398 2053416 GAAGCTCCCATAGCAAAGC 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 2 2 2 80 10 89935835 89936096 TCCAGCACAACAAGTTCCT 60 89935773 89935791 TAACGGTCTGAATGGCCTC 60 NA Rattus norvegicus 81 Rpl7 ENSRNOG00000006992 ENSRNOT00000009431 3 1 1 81 5 2634306 2634530 CTGAAGACACTGCGAAAGG 59 2634573 2634593 GGTACATCTGTCTGTACTCCT 58 NA Rattus norvegicus 81 Pram1 ENSRNOG00000039204 ENSRNOT00000060002 2 1 1 80 7 18511958 18512047 CATATTGCACAGAACCCGG 59 18512089 18512109 TCTAGGGCTGAGACTAGAGTC 60 NA Rattus norvegicus 81 Zscan22 ENSRNOG00000031113 ENSRNOT00000026305 1 1 1 60 1 65681053 65681072 GGAGGATATGACTCAACTGC 58 65678680 65678698 CTCTTCACGGTCCATTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Zfyve28 ENSRNOG00000014874 ENSRNOT00000020154 2 1 1 80 14 81807198 81808354 GAAGCTAAAGAAGGTAACCCA 58 81808395 81808414 GAGGATGACACAGTTTCCTG 58 NA Rattus norvegicus 81 Vps37a ENSRNOG00000012001 ENSRNOT00000016321 2 1 1 81 16 54863645 54863663 CGAAGATTTCCTGGAGGGA 59 54862590 54863603 TCTACAGTGGCAAATTGTTCTC 59 NA Rattus norvegicus 81 Csdc2 ENSRNOG00000005332 ENSRNOT00000007091 3 1 1 91 7 123181117 123181500 GCATGTTTCTGACATCGAGG 59 123181554 123181572 ACTTCTGGTTCTTGGGTGG 60 NA Rattus norvegicus 81 Ly75 ENSRNOG00000007012 ENSRNOT00000010683 1 1 1 80 3 46421992 46426013 TTTCTTGAACCAGCGTCTC 58 46421930 46421948 GCAGTTCTTCACTTCCCAC 59 NA Rattus norvegicus 81 Artn ENSRNOG00000019842 ENSRNOT00000026852 1 1 1 91 5 136762638 136762656 GATCCATTTGAGCTTCGGG 59 136761279 136762583 CTTCTTGAGGCAGCAAAGG 59 NA InUTR Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 1 2 2 80 19 16419493 16419511 AAAGAACGACGAGGACGAG 60 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 2 2 2 80 8 94326201 94326222 TTATCAGTATCCACGACAAAGG 58 94322635 94326160 TCACCACAATAGCCTTGAC 58 NA Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 2 2 2 80 7 18416360 18416380 ACGTAGTATACAAGCGTTCCT 59 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Tcta ENSRNOG00000048237 ENSRNOT00000075241 3 1 1 94 8 117081468 117081813 GTATCACCGTCCAGGTCTG 60 117080344 117080362 TGAGAGCTTCATTTGCTGC 59 NA Rattus norvegicus 81 Thap4 ENSRNOG00000018351 ENSRNOT00000024794 2 1 1 80 9 100885330 100888004 TCTCCTTCCACAGGTTTCC 59 100885268 100885286 GGGTCCAGTTATCCCTCTG 59 NA Rattus norvegicus 81 Mir148b ENSRNOG00000035525 ENSRNOT00000053648 3 1 1 60 7 144912069 144912088 GTTATACACTCAGGCTGTGG 58 144912109 144912129 AGCTTTCGAGACAAAGTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912512 ENSRNOG00000016653 ENSRNOT00000022485 2 1 1 80 9 94574753 94576533 AGCTAGAAATGGTGGTAAAGG 58 94574693 94574714 TCTTCTGAATGCTGATCATCTG 58 NA Rattus norvegicus 81 AABR07067339.1 ENSRNOG00000022456 ENSRNOT00000037392 2 1 1 87 9 40817839 40817882 CCAAATACACAGCCTTCCAG 59 40817932 40817950 CACTCCATTGGAACTGCTC 59 NA Rattus norvegicus 81 Trpm3 ENSRNOG00000027770 ENSRNOT00000018521 1 1 1 80 1 240356641 240369097 CAAAGCCATGTATGTCCGAG 59 240369139 240369158 TCTAGTTGCCATTCCTTGGT 59 NA Rattus norvegicus 81 Sox17 ENSRNOG00000027357 ENSRNOT00000033116 3 1 1 104 5 14893659 14893678 GAATGCCTTTATGGTGTGGG 59 14893745 14894200 TTCCAGGATTTGCCTAGCA 59 NA Rattus norvegicus 81 Fam50a ENSRNOG00000058439 ENSRNOT00000086921 3 1 1 80 X 156394592 156394774 ACTGTTAAGATGAAGAAGGGC 58 156394532 156394550 CTCACTGAAGTCTTTCCGC 59 NA Rattus norvegicus 81 Sepsecs ENSRNOG00000049244 ENSRNOT00000070892 3 1 1 80 14 60680770 60680788 CTACAGAAGTTGGCAGAGG 58 60680830 60682594 CTCAAGTGTCATAGCTAAGGA 57 NA Rattus norvegicus 81 Tmem26 ENSRNOG00000027859 ENSRNOT00000038095 3 1 1 80 20 21667269 21673019 ACCATGGAAACCAGTATTGC 59 21667208 21667227 GGGTTTGATTGATGTCTCCT 58 NA Rattus norvegicus 81 Psmb6 ENSRNOG00000019551 ENSRNOT00000026507 2 1 1 80 10 57132403 57132542 TGGTTTCCACAGTATTGAGC 58 57132585 57132603 TAGCGGTAACACATCTCCT 58 NA Rattus norvegicus 81 Wisp2 ENSRNOG00000010666 ENSRNOT00000014346 1 1 1 82 3 160212100 160215426 TGTGTCTCTTGGATGAGGA 58 160215470 160215490 GCAATTGGGTTTAAAGGTCTC 58 NA Rattus norvegicus 81 Elp6 ENSRNOG00000020847 ENSRNOT00000028288 2 1 1 81 8 118539897 118539915 CAAAGTCACCTGATCCTGC 59 118539960 118540554 TCCAGAGAATGCTCAGCTG 60 NA Rattus norvegicus 81 Tmem14a ENSRNOG00000013238 ENSRNOT00000037489 3 1 1 80 9 27349478 27350054 CAAAGTGTCACTGTTTACAGCT 60 27350094 27350113 GCAGGCATTACTTTCTTGGA 59 NA Rattus norvegicus 81 Klrg2 ENSRNOG00000006814 ENSRNOT00000009194 3 1 1 87 4 66375513 66375531 AAGTCCAAGACTGGGAGAG 58 66372066 66375463 CTTAAGAAGTCCTGGGTGTG 58 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000085355 2 1 2 84 2 207277444 207277462 ACATGGCAAACAGGATCAG 58 207277510 207279005 AGATTCCTGGAGTTCTCCC 58 NA Rattus norvegicus 81 Tiam1 ENSRNOG00000021569 ENSRNOT00000046486 2 1 1 80 11 29957467 29957487 CTTAAACTGCCTCATGGAGAG 59 29957124 29957427 AAGAGTACATCGAGCTCATCC 60 NA Rattus norvegicus 81 Cars ENSRNOG00000020651 ENSRNOT00000050721 3 1 1 80 1 216771639 216771657 TCTTTGGAGCCATAGAGGA 57 216768100 216771596 CTGTAGACTCGAGATTCAGG 57 NA Rattus norvegicus 81 LOC100910721 ENSRNOG00000061282 ENSRNOT00000074845 3 1 1 60 19 9436276 9436296 CATTTCAATGCACCTTCTCAC 58 9436315 9436336 GTTCTTTGGAAAGAGGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202,ENSRNOT00000085435 3 2 2 80 16 54091836 54092877 TAGTGGATAATGAGCTGTGGT 59 54091776 54091796 CAAGTTGCTTCCTTCTCTGTC 59 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000034166 2 1 2 60 3 154044018 154044036 GCAGAACTGCTCATCATCG 59 154044060 154045357 AGTACCTGAACACCTGCAG 59 NA DesignRelaxed Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 2 2 2 80 13 80761259 80761277 AAGTGGATGATGGAACGAC 58 80760054 80761218 CATAAGGTATTTGTTCTGAGGC 57 NA Rattus norvegicus 81 Trpm1 ENSRNOG00000015829 ENSRNOT00000021262 1 1 1 80 1 125058011 125060451 GAATGGAAGATGATGAGCCC 59 125060490 125060512 CCACATCTATATCAATCTCCTCC 58 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596,ENSRNOT00000080691 1 2 2 80 X 157353894 157354654 GAGAAGCTAAAGGGTATTAGCTG 59 157354691 157354712 ACACAGCAGTTCCATAATTGTC 59 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596,ENSRNOT00000080691 3 2 2 80 X 157353834 157353854 GACAGCTACTACGAAGATGTG 58 157353893 157354652 GCTAATACCCTTTAGCTTCTCG 59 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000077950,ENSRNOT00000039553 3 2 2 60 20 4170824 4170843 ATGACAACATCATCACGCTC 59 4170865 4170884 ACCTCCCAGTAGTATCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149,ENSRNOT00000055829 1 2 2 80 1 134844971 134848685 CTGATGTGAAGAAGATGTGGG 59 134844911 134844930 GTGATGGTTCTTGTCTGCTC 59 NA Rattus norvegicus 81 AABR07007675.1 ENSRNOG00000058886 ENSRNOT00000080942 1 1 1 128 2 23257962 23257983 CGAGGAAGTAAACGATATCGAG 59 23258296 23258314 TAAAGCTCAGTGACTCGTG 57 NA DesignNoJunction Rattus norvegicus 81 Krtap2-4 ENSRNOG00000060847 ENSRNOT00000086873 1 1 1 136 10 87535401 87535419 GATCCTTCTCCTCCCAGAG 58 87535283 87535301 GATGGGCCTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2d1b2 ENSRNOG00000038432 ENSRNOT00000058547 2 1 1 91 13 88572823 88575398 ATTATGGAGGCTAAGCCCAG 59 88575452 88575470 ACCATTCCTTGACCTGGTG 60 NA Rattus norvegicus 81 AABR07060287.1 ENSRNOG00000049746 ENSRNOT00000043147 3 1 1 106 4 66091873 66091982 ACATCCCACAAAGCAAAGG 59 66092052 66092070 ATAGGGCTGCTTGTCATCC 60 NA Rattus norvegicus 81 RGD1564719 ENSRNOG00000022393 ENSRNOT00000033396 3 1 1 83 1 91661937 91661960 GCATTCTCTATATCACTGAAGCAG 60 91661731 91661898 GATGTGCAGAATTTCTAAAGCG 59 NA Rattus norvegicus 81 Tbca ENSRNOG00000048342 ENSRNOT00000073688 3 1 1 81 2 24495035 24499660 GCCATTAAGAAGCAGGCAG 59 24499705 24499723 TGTAAGCAGCCTCTAACCG 60 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843,ENSRNOT00000066777 1 2 2 80 3 1981339 1981357 GCTGTGAATATCCACGGAG 58 1980589 1981298 AGAAAGAAAGAGGACAACACAG 59 NA Rattus norvegicus 81 Bod1 ENSRNOG00000020717 ENSRNOT00000028115 2 1 1 80 10 16260168 16262068 ACACTAAGCCAGCTTACCA 59 16262110 16262130 GATTCCATTCCTGTTTGTCCA 59 NA Rattus norvegicus 81 Trim66 ENSRNOG00000014373 ENSRNOT00000019368 3 1 1 80 1 174070711 174071000 GCATGTCCATTAAGGTCAGC 59 174070650 174070669 TGACAGTGACCTTTCTTCCC 60 NA Rattus norvegicus 81 Lzts2 ENSRNOG00000014969 ENSRNOT00000048843 1 1 2 95 1 264774403 264775290 AGACCAAATGGGAGGTGTG 60 264775349 264775367 CACTACCCTTCTGGACCAG 59 NA Rattus norvegicus 81 Lrig2 ENSRNOG00000019957 ENSRNOT00000027042 2 1 1 80 2 206936512 206936530 GAGAGTTGTCTGCCTTTCC 58 206932634 206936471 GGAATATTTCACTGCTCCTCTG 59 NA Rattus norvegicus 81 Donson ENSRNOG00000002012 ENSRNOT00000061304 1 1 1 80 11 31842464 31842906 TGAGTGACTGGTCTGTGAG 59 31842402 31842423 AGGAACAAACGTAGAAATAGGG 58 NA Rattus norvegicus 81 Donson ENSRNOG00000002012 ENSRNOT00000061304 3 1 1 80 11 31838603 31840572 CAAATGCTTAAGAAAGGTGCTC 59 31838544 31838562 CATTTGACTGAGCTGCTCC 59 NA Rattus norvegicus 81 Hsd17b10 ENSRNOG00000003049 ENSRNOT00000043559 3 1 1 80 X 21697291 21697310 CCTAACTCAGAGGGTGAGAC 59 21697351 21698204 CTTCTCAGAGGTCACATTTGC 59 NA Rattus norvegicus 81 Tomm40l ENSRNOG00000003398 ENSRNOT00000004641 2 1 1 80 13 89593163 89593185 GAATATCGAGGAGATGACTACAC 58 89592810 89593126 AGCAACCATAATCACTGATTCC 59 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 3 2 2 80 8 116512952 116514096 ATCAGCTACATCAGGTACCA 58 116512891 116512913 GAGGTCTGATTATAGAGTTGAGG 58 NA Rattus norvegicus 81 Glyatl3 ENSRNOG00000050990 ENSRNOT00000074110 2 1 1 80 9 23379265 23380413 TGAATCACTCAAGGTGTATGGA 59 23380451 23380472 CATGAATCCAATACCACTTCCT 58 NA Rattus norvegicus 81 Msh2 ENSRNOG00000015796 ENSRNOT00000021538 2 1 1 80 6 11267715 11267733 CAACCGGTTACTGAAAGGC 59 11263017 11267673 GAAACTGCAACCTGATTCTCC 60 NA Rattus norvegicus 81 Sim2 ENSRNOG00000054203 ENSRNOT00000081834 2 1 1 80 11 34335925 34338388 GGATACAAGGTCATTCACTGC 59 34338428 34338448 GTAACAGGAGTCATACAGGGA 59 NA Rattus norvegicus 81 Ccdc184 ENSRNOG00000021945 ENSRNOT00000031157 2 1 1 100 7 139763107 139763125 GAGATCATGACCAAGGACG 58 139763189 139763207 ATACCGCCGTTATACTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058068,ENSRNOT00000058067 2 3 3 80 14 81858806 81858828 CAGAAGATTATGTCTGCTATGCG 60 81858865 81875494 CACTTCTGAAGTCTTTGTCCTC 59 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 2 1 1 75 10 17375114 17389907 ACATAACACTACCACACGGT 59 17389945 17389963 CAATAGACTGGCAGCTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Apof ENSRNOG00000033619 ENSRNOT00000041341 3 1 1 115 7 2689582 2689841 GACTATATGGGTGCTCAGCT 59 2689919 2689937 ATCGTAGAGACACCCTTCG 59 NA InUTR Rattus norvegicus 81 Pced1b ENSRNOG00000022807 ENSRNOT00000037874 2 1 1 80 7 138739182 138742239 GTCTCCAGCAAACGTAGGA 59 138742281 138742301 CTTCAAGCAGGGAATCAAACC 60 NA InUTR Rattus norvegicus 81 Ms4a4c ENSRNOG00000020997 ENSRNOT00000033613 1 1 1 80 1 227658561 227660994 CTAGTGAGGTTCTTGTAGTGC 58 227661035 227661054 GTAGCAATGGTTGAAGTGGT 59 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891,ENSRNOT00000011000,ENSRNOT00000084499 2 3 3 80 6 3784823 3784842 TAAAGTCAGCGGAAAGACTG 58 3783519 3784780 GTAGTCTTCCTCTGTGCAG 57 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853,ENSRNOT00000079510,ENSRNOT00000064756 1 3 3 80 12 44106490 44122295 GGGAAACAAGATCCTGGTG 58 44122339 44122357 CAGGTGAAGTCTCCAAGTG 58 NA Rattus norvegicus 81 Ets2 ENSRNOG00000001647 ENSRNOT00000002247 2 1 1 80 11 36082178 36083865 TTCTGTCTCCCATGACTCG 59 36083908 36083927 TTTAAGGCTTGGCTCATCAC 59 NA Rattus norvegicus 81 Cebpzos ENSRNOG00000040303 ENSRNOT00000062031 3 1 1 88 6 1516261 1516873 ACTCGAGCCAAGATTTCAG 58 1517547 1517567 CATTCCAGACTGTTCAATGGA 58 NA Rattus norvegicus 81 Fam19a3 ENSRNOG00000030253 ENSRNOT00000040772 1 1 1 98 2 207254763 207255521 ATCCACAGTCCTAGTGAAGC 59 207254684 207254702 CATTTGACCGTTTGGGAGC 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 1 2 2 80 11 34592889 34592909 TGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 2 3 3 80 10 109899137 109899158 TTGGATATGGAGAAGAGGAGAG 59 109899199 109899535 AGTCATGTGATCCACCTCC 59 NA Rattus norvegicus 81 Tcaf1 ENSRNOG00000017911 ENSRNOT00000024428 1 1 1 80 4 72124682 72126195 CGTACCTACAGCTTCAAGAG 58 72124621 72124640 AGTTCGTTGTCTGGTTTCTG 59 NA Rattus norvegicus 81 Foxd1 ENSRNOG00000043332 ENSRNOT00000066819 3 1 1 61 2 28460472 28460490 GAGGAGACAGACATCGACG 60 28460515 28460533 TCATCGTCCTCTTCCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpsa ENSRNOG00000018645 ENSRNOT00000025225 1 1 1 88 8 128806858 128806876 CAGGAACCCACTTAGGTGG 60 128806924 128807490 GTTGATGATGTAGATACCGTCAC 59 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 1 2 2 80 9 100298056 100298972 TTTCTGCTAGATAAGTTCCAGG 58 100297997 100298017 GGTCTTCTGGAAGATGTTCTG 59 NA Rattus norvegicus 81 Tmem50b ENSRNOG00000002028 ENSRNOT00000002775 3 1 1 82 11 31730169 31730188 GTGTATCCTAAGCCTGAGCA 59 31727437 31730127 GCATTTATCATGAAGAAGGCCA 60 NA Rattus norvegicus 81 Tmem74 ENSRNOG00000005114 ENSRNOT00000006791 3 1 1 60 7 82686756 82686776 AACTTGGAACAGAGAAGTCAG 58 82686716 82686737 GATCTCCAGGGTGATTATTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363068 ENSRNOG00000049446 ENSRNOT00000075091 3 1 1 80 14 6140808 6140827 ATCCTTCCCAGAAGAGTCTC 58 6140422 6140767 CTTCCCAGTAATAGCCTACAG 57 NA Rattus norvegicus 81 Tesc ENSRNOG00000001128 ENSRNOT00000001490 2 1 1 80 12 44148528 44149578 CTTCTTCGACAACAGGAACC 59 44148467 44148487 ATGATAGTCAGGAAGTCCTCG 59 NA Rattus norvegicus 81 LOC100911224 ENSRNOG00000046455 ENSRNOT00000072367 1 1 1 85 1 68265759 68265780 TCTTGATGAGACTCAGAAGCTC 60 68263814 68265713 TTCTATGCCCACAACCCTG 60 NA Rattus norvegicus 81 Gorab ENSRNOG00000003861 ENSRNOT00000005148 3 1 1 80 13 81690625 81690645 GAACAACGACTGATGGAAGAG 59 81688527 81690584 GGTCCTCCTAGATCTTTCCG 59 NA Rattus norvegicus 81 Zfp414 ENSRNOG00000008378 ENSRNOT00000011094 2 1 1 82 7 18499383 18499845 TACTTCAAGTGTGAGAATTGCC 59 18499885 18499906 CCATGGTCTATACAAACATGCA 59 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000089843,ENSRNOT00000063781 2 2 2 99 9 43000895 43000913 CTGACTGGAGTAAGGACCC 59 43000493 43000833 TTGGTGGTTCTGTCATCTCC 60 NA Rattus norvegicus 81 RGD1564039 ENSRNOG00000048021 ENSRNOT00000073262 3 1 1 88 3 143395911 143395931 TGTAATTTCCAGAGGGAATCC 58 143394847 143394915 GGACATAGTTTAGATATGGGCA 58 NA Rattus norvegicus 81 Naa25 ENSRNOG00000001350 ENSRNOT00000048984,ENSRNOT00000080418 1 2 2 80 12 40636096 40636115 AAAGACGGCAATGTGAAGAC 59 40634807 40636058 CCAAAGGACGATAGAAATAGTCTC 59 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185,ENSRNOT00000073296 3 2 2 82 10 55922894 55922913 ATCTTTGAGATGGAAAGCGT 58 55922583 55922849 TCTGAGCCAGTTCGATAGG 59 NA Rattus norvegicus 81 Rbl2 ENSRNOG00000012153 ENSRNOT00000017361 1 1 1 80 19 17315124 17318162 AGGACTTGGAAGAAGTGTG 57 17315062 17315081 CGCCTTCTAGTAGTACTGAC 57 NA Rattus norvegicus 81 Zfp451 ENSRNOG00000012718 ENSRNOT00000017022 1 1 1 80 9 38431145 38431164 TCCGTTTCTGGTTAAGTGTG 58 38431207 38432369 CAACGAACCCTGAAATGGG 59 NA Rattus norvegicus 81 Lamtor5 ENSRNOG00000018186 ENSRNOT00000024473 1 1 1 92 2 210037293 210037311 ATATCTGTTCTCGCCCAGC 60 210037362 210039016 CATAACATTCCCGTTATCTGACTC 60 NA Rattus norvegicus 81 RragB ENSRNOG00000003160 ENSRNOT00000004235 1 1 1 80 X 19126356 19130932 GTGCAACAATACTAGACCGT 58 19126295 19126315 TTCCAACAGAGTCTACGAGAG 59 NA Rattus norvegicus 81 AABR07055492.1 ENSRNOG00000056878 ENSRNOT00000077369 2 1 1 83 7 4127105 4127123 AAAGCCATCAACACCAAGG 59 4127039 4127057 GAGCTAGGTCCTTTGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Olr662 ENSRNOG00000048178 ENSRNOT00000047726 1 1 1 60 3 77493473 77493491 AGTGAGTTTCCTCATGCTG 58 77493431 77493449 GTGGTTTCTTAGGGAACGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a8 ENSRNOG00000057620 ENSRNOT00000092123 3 1 1 80 X 157132210 157132314 TGGGTTTATGGAGCTGACC 59 157132148 157132166 GCACCATTTCATCCAAGGG 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 1 2 2 80 13 85852693 85854905 CAGATCCTCAGGAAAGCAC 58 85854947 85854967 AGGTCTTTCCTTATGGTTCTC 57 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 1 2 2 106 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Foxl1 ENSRNOG00000047125 ENSRNOT00000074430 2 1 1 60 19 53055914 53055932 TTATAGCCATGGCGATCCA 59 53055956 53055974 TGGTAGATGCCGTTCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cryzl1 ENSRNOG00000028014 ENSRNOT00000033745 3 1 1 80 11 31855554 31855573 CAAGGTGATCTCAACAGCAC 59 31853234 31855511 TCAATCACTCGGGCTAGAG 59 NA Rattus norvegicus 81 Gltp ENSRNOG00000001192 ENSRNOT00000001581 2 1 1 94 12 47667714 47681127 CCTTCTTCGATTGCCTTGG 59 47682853 47682871 GTCAGTGTCATAGACGGCT 59 NA Rattus norvegicus 81 Vps16 ENSRNOG00000021222 ENSRNOT00000028821 3 1 1 80 3 122967659 122967680 TTACAATCAGGACGACAATCAC 59 122967721 122967992 CCTTCAATACGCTCTTCCG 58 NA Rattus norvegicus 81 Aldh1a2 ENSRNOG00000055049 ENSRNOT00000079115 2 1 1 80 8 77685435 77687415 TTATCCCGTGGAATTTCCC 57 77687459 77687477 TGATGACCACAGTGTTACC 57 NA Rattus norvegicus 81 Ppp1r16b ENSRNOG00000015614 ENSRNOT00000021133 2 1 1 80 3 155253777 155253796 GACATCCACTGCATGATAGC 59 155253838 155255736 TCCAGCTATGTGTAGCAGTG 60 NA Rattus norvegicus 81 Tnfrsf17 ENSRNOG00000021987 ENSRNOT00000035886 2 1 1 82 10 4256795 4257624 GTGATCCAAGCATGACCAG 59 4256731 4256749 CAAACAGACGACCAAGGTC 59 NA Rattus norvegicus 81 Arl4d ENSRNOG00000020770 ENSRNOT00000028178 3 1 1 136 10 89578279 89579072 CTGACTGAAGACAACCCAG 58 89579171 89579190 CATTTCAGTCAAGTGGTTCC 57 NA InUTR Rattus norvegicus 81 P4hb ENSRNOG00000036689 ENSRNOT00000054958 1 1 1 80 10 109739941 109739959 TGTGTCTGACTACGATGGC 60 109739651 109739900 ATGAAGATGAACAGGATCTTGC 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129,ENSRNOT00000060832 1 2 2 80 20 5132793 5133051 CATTCAAGACTCCGGAGCA 60 5133095 5133113 CTCTGTCCATGACCAGGAG 59 NA Rattus norvegicus 81 Zfp423 ENSRNOG00000014658 ENSRNOT00000020028 3 1 1 84 19 20285810 20285828 GGACCACCGTGATCTTACC 60 20285876 20292392 CTGGTACGTCTTCTTCCGG 60 NA Rattus norvegicus 81 LOC100360726 ENSRNOG00000045728 ENSRNOT00000074653 2 1 1 62 11 42936443 42936461 AGGAAACCACTGATACGCT 59 42940620 42940638 ATGTCACTGAGGGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912866 ENSRNOG00000029597 ENSRNOT00000043327 1 1 1 85 10 92787534 92787552 CACACTCCCACAGTACCAG 60 92784185 92787487 CATTGGTAGCTCTTCCAAGTC 59 NA Rattus norvegicus 81 Mboat4 ENSRNOG00000030102 ENSRNOT00000042003 1 1 1 81 16 61783749 61786146 CCTGTGAGGTTCTACATCAC 58 61783687 61783706 CTTCAGAAATGTCCAGGGAG 58 NA Rattus norvegicus 81 Mboat4 ENSRNOG00000030102 ENSRNOT00000042003 2 1 1 82 16 61783749 61786146 CCTGTGAGGTTCTACATCAC 58 61783686 61783704 CCTTCAGAAATGTCCAGGG 58 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 1 1 1 66 8 55037845 55038757 AGGTGCATCACTTCATGGA 59 55038787 55038805 GAGTCTAGCCGACTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Htatsf1 ENSRNOG00000027761 ENSRNOT00000065636 3 1 1 80 X 159525243 159526048 GAAGCTCCTTCTGTTTGATAGAC 59 159526084 159526106 ATACAATTATCAGCCTCCTCTGG 60 NA Rattus norvegicus 81 Ftsj3 ENSRNOG00000009857 ENSRNOT00000013295 2 1 1 80 10 94440321 94440339 GGTAAGAAACGAAGCCGTG 59 94440179 94440278 TCGATATTTCACTGGGTCCT 58 NA Rattus norvegicus 81 LOC100912937 ENSRNOG00000037684 ENSRNOT00000029656 1 1 1 80 2 102419071 102419984 CTACACAAATTGCTCAGAGTCC 59 102420023 102420043 GAAGTCACGGTAAGAAAGCTC 59 NA Rattus norvegicus 81 AC109707.1 ENSRNOG00000049527 ENSRNOT00000050715 2 1 1 70 13 31752889 31753063 GGCAATCATAGTGGAAGCA 58 31752837 31752856 GACTGGTTGTTGTAATTGCC 58 NA DesignRelaxed Rattus norvegicus 81 Mrps11 ENSRNOG00000018531 ENSRNOT00000025008 1 1 1 80 1 140478228 140483144 GAGTCGCTTCAGCATTTACC 59 140483184 140483205 GGGACTTCCTCAAATTTCATCC 59 NA Rattus norvegicus 81 Slc13a5 ENSRNOG00000014870 ENSRNOT00000020043 3 1 1 80 10 58815529 58817585 AGGATGTGAGACTTCAGGG 58 58815467 58815490 GTAATAATAGCAGGTCTCACTGAG 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 3 3 3 85 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583917 100584968 GGTACATGAAACACCTGAGTG 59 NA Rattus norvegicus 81 LOC691170 ENSRNOG00000022871 ENSRNOT00000034545 2 1 1 80 7 13323908 13323927 ACATCAAGTTACAGCATGGA 57 13323967 13335408 TTACATTATGGACATCTGGGAG 58 NA Rattus norvegicus 81 Coro1b ENSRNOG00000021828 ENSRNOT00000029829 3 1 1 80 1 219398785 219399121 CCCTCTAAACAAGACAGGC 58 219399163 219399183 CAGTCAATATCCAGAACAGGT 58 NA Rattus norvegicus 81 Rn60_10_0876.8 ENSRNOG00000059238 ENSRNOT00000086748 1 1 1 60 10 87798113 87798131 ATTCCCTCACCCTCTTACC 58 87798155 87798173 CTATGAAGCTGTCACTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 3 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726068 TTCTCTGCTGCATAGTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Nuak1 ENSRNOG00000008061 ENSRNOT00000010636 3 1 1 90 7 25039652 25039670 GCTATGAGCTGCAAGAGAC 58 25039724 25075303 TTTATAGCAACCACTCGGC 58 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000083256,ENSRNOT00000042227 3 2 2 80 9 45005864 45067878 TAATTCGGGAGATGACCTGG 59 45005803 45005821 GGAATGGGAACTTGCTTGG 59 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 3 3 3 80 2 147957331 147957350 ATCCGGACAAAGAGTCAAGG 60 147955474 147957292 CATTACAAAGACCAAGACTCTCC 59 NA Rattus norvegicus 81 Eef2kmt ENSRNOG00000002876 ENSRNOT00000003843 2 1 1 83 10 10536589 10536890 CTATTTGCTGCCTTCAGGAG 59 10536936 10536954 CATGTAACCAAGCCTGTGG 59 NA Rattus norvegicus 81 Serpinb7 ENSRNOG00000002555 ENSRNOT00000003466 3 1 1 80 13 27345853 27353666 CTATCCGAAATTGAAAGCAAGC 59 27353701 27353725 CACATACTGAGATTTCATCTTCCTG 60 NA Rattus norvegicus 81 Tanc1 ENSRNOG00000025394 ENSRNOT00000038983 1 1 1 80 3 45773501 45800525 CAAGAAGGAAGCAGGAGGT 59 45800567 45800587 GACAAACTGTTCACAGGAGAG 59 NA Rattus norvegicus 81 Chrnd ENSRNOG00000019527 ENSRNOT00000026504 2 1 1 80 9 94291777 94291877 CTTTGGTAGGCAAGTTCCTG 59 94291920 94291938 GGATGTTGAGCACGATGAC 59 NA Rattus norvegicus 81 Pi4k2a ENSRNOG00000014675 ENSRNOT00000019874 2 1 1 80 1 261355570 261357365 AATCCTAACTGTCGGGACAC 60 261357407 261357426 AGCCAGTCCATTGTCTATGG 60 NA Rattus norvegicus 81 Fcrl6 ENSRNOG00000000055 ENSRNOT00000000059 1 1 1 80 13 90989184 90992334 TTCTACTGCTCTGTGTTTCC 58 90988522 90988541 TCTCTGAAGAGTTGAGACGA 58 NA Rattus norvegicus 81 Ccdc125 ENSRNOG00000027410 ENSRNOT00000031385 3 1 1 81 2 30692038 30694457 ATATGACAGGCTGAACTGTG 58 30694499 30694519 AGACTTGAGCATCTTTACCTC 58 NA Rattus norvegicus 81 Olr1768 ENSRNOG00000058820 ENSRNOT00000077744 1 1 1 60 X 156210473 156210493 TCACTTACTCTTACCACACTG 57 156210515 156210533 GGTTGATGACATGGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp39a1 ENSRNOG00000010519 ENSRNOT00000014051 1 1 1 80 9 19858597 19858616 AGAGACACGTCTACACAGTC 59 19848952 19858554 CAGAACGCAATAGGAGCAG 59 NA Rattus norvegicus 81 Krt32 ENSRNOG00000013611 ENSRNOT00000091394 1 1 1 80 10 87997287 87997389 TGGTTCAATATGCAGATGGAG 58 87997227 87997247 GATGTCTGACTGGTAACTCTG 58 NA Rattus norvegicus 81 Brs3 ENSRNOG00000000873 ENSRNOT00000001164 2 1 1 82 X 159505713 159505731 AAGTGCTTTCCTTCATCCG 58 159505777 159507339 TGCTTTGTATCTGTCAGCG 58 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000037315 ENSRNOT00000048323 3 1 1 60 9 117466693 117466711 AGCATAGTAGAACGCTCCT 58 117466651 117466670 GATCCTTGATTGCAGGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 1 1 1 99 1 100811813 100824824 GACATCTTCCCAAGGTTGC 59 100824885 100824905 CCTCCAAAGTTAAACCCACTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dctn6 ENSRNOG00000013254 ENSRNOT00000017756 1 1 1 80 16 61795629 61800695 GAGAAGACTCAGAAGAGTGTG 58 61800736 61800755 TATGGTTACATCTCCTCGGA 57 NA Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 1 2 2 80 10 94620140 94622450 CTACATGGGTAAGAAGCAAGAC 59 94620081 94620100 AAGGCTGATGACAAAGTCTG 58 NA Rattus norvegicus 81 Chp2 ENSRNOG00000019112 ENSRNOT00000025832 1 1 1 87 1 192171259 192171277 GATGAAGACGATGCCACAC 59 192171328 192171494 AGAGCTGAAATGCAAAGCG 60 NA Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 1 2 2 80 7 123409468 123412072 GATGATGCAAAGGTCAAGGA 58 123412112 123412133 ACATAAGAGAATTCGAGATCGG 58 NA Rattus norvegicus 81 Eif1b ENSRNOG00000018848 ENSRNOT00000025615 2 1 1 81 8 129158303 129159538 ACCTCCAATCTTTCGACCC 59 129159579 129159601 ATATGAATGTAGTCCTCAGTCCC 59 NA Rattus norvegicus 81 Tbc1d17 ENSRNOG00000020191 ENSRNOT00000027436 2 1 1 80 1 100843015 100844606 TCTCTAAGAAGGACCCAAGTG 59 100842955 100842973 AGTCAGGTTCATAGCCTGG 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 3 2 2 80 8 36241904 36241925 GACCATATACAACTGTACAGCC 59 36241966 36246694 GGCACTGACTCTTGTTCCT 60 NA Rattus norvegicus 81 Vom1r106 ENSRNOG00000043367 ENSRNOT00000064298 1 1 1 60 7 17957437 17957458 CATCAATCACCTCACTTCTCTG 59 17957478 17957497 GTGACTCAGAAGAACGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055943.1 ENSRNOG00000000958 ENSRNOT00000001268 1 1 1 95 7 16157074 16157093 ATCGAGGCCATTATATTGCA 57 16156996 16157014 CTTCAATAGCTTGTGCGTC 57 NA DesignNoJunction Rattus norvegicus 81 AABR07055943.1 ENSRNOG00000000958 ENSRNOT00000001268 3 1 1 96 7 16157074 16157093 ATCGAGGCCATTATATTGCA 57 16156995 16157014 TCTTCAATAGCTTGTGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 2 2 3 80 14 83344922 83345147 GCTTGCACAGTGTGATCAG 60 83345190 83345209 TTACTTGCTCCACCTCAGAG 59 NA Rattus norvegicus 81 AABR07052807.1 ENSRNOG00000047074 ENSRNOT00000007835 1 1 1 81 3 76314617 76314641 GGGATCATTCTCCTACTATATTGTG 59 76314559 76314581 TCATGACTGTATAAAGAGCGAC 58 NA Rattus norvegicus 81 Tlr10 ENSRNOG00000038722 ENSRNOT00000059124 3 1 1 87 14 45068278 45081673 ACTCATCAGAGGAACTTTGAC 58 45081720 45081740 GCACAAAGATGGACTTATAGC 57 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255,ENSRNOT00000092045 2 2 2 60 3 77153040 77153060 CTGTTGAACTTCCTCCTACTG 58 77153080 77153100 GGTTCTTTAGGGAGTGAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805,ENSRNOT00000078514 3 3 3 80 1 217629151 217631196 CCAGGAACACATCAACATACAC 60 217629092 217629110 GTTTCCAGCTCCTTCTCCT 59 NA Rattus norvegicus 81 Actl9 ENSRNOG00000049571 ENSRNOT00000075258 2 1 1 60 7 18311815 18311836 CAACAGGAATCTTTCAGTGTGG 60 18311856 18311875 CTGGAAAGCATGTAGTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mc1r ENSRNOG00000038193 ENSRNOT00000058145 3 1 1 60 19 56217157 56217175 GCTGGACAATGTCATCGAC 59 56217199 56217217 CAGGAAGCAGAGACTGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 3 2 2 80 12 48346501 48346522 TCTTACTGTTCATTGCAAGAGC 59 48346563 48347853 CCGTTGGATACACCTCAGG 60 NA Rattus norvegicus 81 Zfp87 ENSRNOG00000016462 ENSRNOT00000022527 2 1 1 88 1 37932010 37932028 ATGTCTGGACCTTGCTCAG 59 37931488 37931958 TACAGGATGCAAGACCCAG 59 NA Rattus norvegicus 81 RGD1310262 ENSRNOG00000005619 ENSRNOT00000007519 2 1 1 215 19 25133118 25133136 GTCACTGCTAGAGCAGGAG 60 25132342 25132360 CTTCACAGACCTCAGGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tas2r119 ENSRNOG00000011963 ENSRNOT00000015904 1 1 1 60 2 85305800 85305822 TGTTCTGCTCTTGATATACTCCC 60 85305840 85305860 GCCTACCATAGTCCTCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkaca ENSRNOG00000005257 ENSRNOT00000041717 1 1 1 80 19 25117380 25117710 CCATCTATCAGAGAAAGGTGG 58 25117749 25117770 CATAGTCGTCAAAGTTACTCGT 58 NA Rattus norvegicus 81 Rnf150 ENSRNOG00000003479 ENSRNOT00000004621 2 1 1 90 19 24221048 24263927 ACAACTAACAGTGACCAAGAG 58 24263979 24263997 GTTCTACATCAGACAGCCC 58 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631,ENSRNOT00000023610 2 2 2 80 1 211557899 211557917 CTGCCACCAAATCTCAAGG 59 211557960 211559532 AGACCTCTTTCTGAGTGTGG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068,ENSRNOT00000081570 1 3 3 86 14 80985660 80987122 AGGGAAAGTGTCCACAGAG 59 80985592 80985610 ATAGCCGAGTGGTTTCTGG 60 NA Rattus norvegicus 81 LOC100364989 ENSRNOG00000037452 ENSRNOT00000056688 2 1 1 82 X 159097014 159097032 TCAGGCCATCTTCGATCAG 59 159097076 159099628 CGGACTTAAGCTCAATGAGAC 59 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146,ENSRNOT00000005958 1 2 2 80 7 83396248 83403125 TTCAAACATATGCAGAGGTCG 59 83403164 83403185 GCCCATGTATTGTCAATATGGT 59 NA Rattus norvegicus 81 Rpl31 ENSRNOG00000013508 ENSRNOT00000033733 1 1 1 80 9 46089215 46090069 CAAAGGAATAAGGAATGTTCCG 58 46090108 46090128 TTGTTTGGTGAATCCTCATCC 59 NA Rattus norvegicus 81 RGD1561106 ENSRNOG00000048318 ENSRNOT00000044849 3 1 1 60 X 14733527 14733546 AACTTCTCACGCTACTTCCT 59 14733486 14733506 GAAATATCTCAGCATTGCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef4 ENSRNOG00000014035 ENSRNOT00000018935 1 1 1 80 9 41298036 41298057 GAAGATCTGCAAGTATCCTCTC 58 41298096 41298502 TCGACATTCTTAAAGTCCCTG 58 NA Rattus norvegicus 81 Gpatch8 ENSRNOG00000021044 ENSRNOT00000050474 2 1 1 80 10 90483081 90501728 CAGAGACTTTCAGGGTAATCAC 59 90483022 90483040 ATAGGCTTGTCAAGGGACG 60 NA Rattus norvegicus 81 Prex1 ENSRNOG00000006952 ENSRNOT00000009517 3 1 1 80 3 163377156 163382181 AGCGGAAATCTAGGGTCAC 59 163377094 163377113 CCCTGAAGATGTACAGGGAG 59 NA Rattus norvegicus 81 Olr72 ENSRNOG00000047528 ENSRNOT00000075135 2 1 1 60 1 168176487 168176505 TGGTGTGCATTTCTGTGTC 59 168176445 168176463 TGTGAAGTAATGCCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361422 ENSRNOG00000031956 ENSRNOT00000040168 2 1 1 60 X 97261853 97261872 GAAGAACCCAAGGTTTCCTC 59 97261812 97261833 AAATACAGGCTCTCCAAATACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 2 2 2 80 2 137325786 137325806 CAAATTATACGACCAGTGGCT 59 137325339 137325747 TCTAGAAGACTCTTCACTGCTG 59 NA Rattus norvegicus 81 Ptgds ENSRNOG00000015550 ENSRNOT00000020926 2 1 1 80 3 2687206 2687225 CATCACCTTTAGCAAGGACC 59 2686735 2687166 TACTCTTGAATGCACTTATCCG 58 NA Rattus norvegicus 81 Galnt12 ENSRNOG00000008099 ENSRNOT00000011112 3 1 1 80 5 62735412 62735430 TGCTGACATTTCTGGACTG 58 62735473 62738780 ACTCCTTCTCATGGATCCTC 58 NA Rattus norvegicus 81 Hspa5 ENSRNOG00000018294 ENSRNOT00000025067 1 1 1 80 3 13838624 13838642 GAGGAGGACAAGAAGGAGG 59 13838686 13838814 CTTGAATACACCGACGCAG 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 1 4 5 81 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Tiparp ENSRNOG00000011238 ENSRNOT00000015387 1 1 1 81 2 157335649 157340395 TATTTACAGACACTTGGTGGG 58 157340436 157340456 CATCTGGACAGATGATTTGTG 57 NA Rattus norvegicus 81 Gjc1 ENSRNOG00000048838 ENSRNOT00000073372 1 1 1 81 10 90782876 90784291 TGGTTAACAGGGCAAACCA 60 90782813 90782833 TCGAATGGTTGTGTATCTCCT 59 NA InUTR Rattus norvegicus 81 LOC100365525 ENSRNOG00000031248 ENSRNOT00000058250 2 1 1 80 2 132548070 132549341 GCAACCTTTCGTTCCATGG 60 132547413 132547433 GTTCTGCTTCTTGACTTCACG 60 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 2 1 2 282 14 83560718 83561582 CCTATGGATCTGGAGGCTG 59 83562962 83562980 ACCTGTGTCTCTTTGTCAC 57 NA DesignRelaxed Rattus norvegicus 81 LOC100911874 ENSRNOG00000003872 ENSRNOT00000005228 1 1 1 80 9 52897698 52898637 TCACCTAAAGATACTGAGCCA 58 52897638 52897659 TTCAAGTTCACGGATGTTAGAG 59 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015,ENSRNOT00000091896 3 2 2 80 2 211226243 211227163 CCATTAGTAACGATGAGGATGC 59 211226184 211226207 CATGGGAATACTTCTTTCTGACTG 60 NA Rattus norvegicus 81 AABR07041973.1 ENSRNOG00000031222 ENSRNOT00000048467 1 1 1 60 X 144446433 144446453 TTCCACCTTCTCATCTCATCC 59 144446475 144446493 AACAGACTCTTCCATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 3 2 2 80 10 59810588 59810606 TATTTCCGAGTCACCGGAG 59 59810646 59812798 CTGCAGGAAATATTGAATCCCTC 60 NA Rattus norvegicus 81 Hfm1 ENSRNOG00000023299 ENSRNOT00000033794 2 1 1 80 14 3887547 3887566 TGATGCAAAGCTGCATACTG 59 3887604 3893475 CTGCCACATGTTCTAGATAATCTG 60 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 2 2 2 80 2 180118950 180123367 AAAGCAAAGCGGTGAATCTG 60 180123410 180123428 TGGACACAGAGAAGTTCCG 59 NA Rattus norvegicus 81 Cib2 ENSRNOG00000059834 ENSRNOT00000078571 3 1 1 80 8 59124314 59126688 CAAGATCTATGACTTCAACACTGAC 60 59124258 59124278 TCTGACTTAGTAAGTCTGGCC 59 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087520,ENSRNOT00000078309 2 2 3 79 20 5227632 5227650 CTACACTCCTCTCCCTGGA 59 5227307 5227325 TCTGGATCTCCTTCTCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000089958,ENSRNOT00000022861 3 2 2 80 3 156971598 156971616 TCCCAGTAGATTGGTGGGA 60 156969674 156971557 CATTGTACCTCTCATAACCGTG 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 1 3 3 80 3 147808383 147809352 GACCAAGAAAGCAGAGGAG 58 147808321 147808339 GCATACTTGATTGCAGCCT 59 NA Rattus norvegicus 81 Nkx1-1 ENSRNOG00000005113 ENSRNOT00000073177 1 1 1 189 14 82603956 82603974 TTCAACAGTAGGAGACGCC 59 82604127 82606174 TACTTGTAGGCTCAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr98 ENSRNOG00000033060 ENSRNOT00000045286 3 1 1 60 1 168520273 168520292 TTCCTAACTCATCGCATTGG 58 168520314 168520333 GGCTCGCAAAGATGATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wwc3 ENSRNOG00000024250 ENSRNOT00000071173 2 1 1 80 X 24984693 24984712 GCCTCCAAAGAGATCTACCA 59 24984752 24986142 TGCTATCTTCTCCCTAAAGGTC 59 NA Rattus norvegicus 81 Tmbim4 ENSRNOG00000004312 ENSRNOT00000005694 3 1 1 80 7 65000434 65000452 TCTTTCTTGGCTTGACTGC 58 65000495 65001478 ATAAACAAGCAAACAGCCCT 58 NA Rattus norvegicus 81 Eno3 ENSRNOG00000004078 ENSRNOT00000005612 3 1 1 80 10 57283400 57283517 AACCAGCTTATGAGGATTGAG 58 57283559 57283577 TTTGGCCTTTGGATTACGG 59 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 1 2 2 80 9 35289616 35291111 GAACATCTCAGAGGTGGTG 58 35291155 35291173 TGACTATCTCTGCAACCGT 58 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 3 2 2 80 9 35289615 35291110 AGAACATCTCAGAGGTGGT 58 35291154 35291172 GACTATCTCTGCAACCGTC 58 NA Rattus norvegicus 81 LOC100910227 ENSRNOG00000047523 ENSRNOT00000074802 1 1 1 60 2 115290368 115290391 CATTCTTCTCACTATTGTCTCCTC 59 115290409 115290428 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myrip ENSRNOG00000018797 ENSRNOT00000025460 1 1 1 80 8 129134849 129134870 CAATTTCCTTCTACAAGGCTCC 59 129134910 129137262 AGAACAGGCTCCATCAAGTC 60 NA Rattus norvegicus 81 Trhr ENSRNOG00000005048 ENSRNOT00000006783 3 1 1 81 7 83147057 83147075 CGTCACTGACACGTATGTG 59 83147118 83151679 AGAACTGGGTCCATTCTTCTC 60 NA Rattus norvegicus 81 Wfdc6b ENSRNOG00000031823 ENSRNOT00000048654 2 1 1 86 3 161077091 161078032 GAAACACAGTGTTCATATCAGC 58 161078077 161078097 AGCAGCTTACAATAGACACTG 58 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 1 2 2 80 2 27976386 27977918 CCTGACTCTGGACAAACTG 58 27977960 27977980 ATACTCCCTCTTGATACGGTC 59 NA Rattus norvegicus 81 Helz ENSRNOG00000003213 ENSRNOT00000030300 2 1 1 80 10 95867189 95867207 AATACGAGCTGAACTTCGG 58 95867250 95869673 CTGAATTGCTTTCCTTGGAC 57 NA Rattus norvegicus 81 Pes1 ENSRNOG00000004515 ENSRNOT00000005996 3 1 1 80 14 84221987 84222006 GCATCTACTATCAGGCTGAG 57 84222048 84224467 CTGTTGGATGATCATGGGAG 58 NA Rattus norvegicus 81 Eras ENSRNOG00000048396 ENSRNOT00000071835 2 1 1 60 X 15321900 15321919 ACCACTGCTTTGTGAAAGAC 59 15321942 15321960 GCCACTTCCTTCCAGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055353.1 ENSRNOG00000047912 ENSRNOT00000073169 3 1 1 81 7 1720250 1720269 AAGTGTAAATTCGAGAGGCA 57 1720313 1721486 TGAGATCCAGCCTGTAGTC 58 NA Rattus norvegicus 81 Nf2 ENSRNOG00000007948 ENSRNOT00000010690 1 1 1 80 14 85033665 85034789 ATAAGCTGATTCTTCAGCTGTG 59 85033606 85033627 GCTGAACTTCTAAAGAGTCAGC 59 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 2 2 2 80 3 72456006 72456149 CAAAGAGAAGAAAGAGGAGTGG 59 72456188 72456208 CCTTCATACTCTTTCATGGCT 58 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000048074 1 1 2 80 13 111947018 111947036 CTTCTGCTTGGGAATCCAG 58 111932454 111946974 CCACCTGTCAAATAGGTCC 58 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200,ENSRNOT00000085698 3 2 2 80 5 75187501 75187735 TCCTGTGAAGCCATTTCCT 59 75187439 75187457 ACTGCCATATGTGAACGCT 60 NA Rattus norvegicus 81 Cabp4 ENSRNOG00000022044 ENSRNOT00000001550 2 1 1 80 1 219387189 219387611 CATGTTTGGAAAGGACCGTG 60 219387048 219387067 TGGTCAGTGTCAAACTCCTC 60 NA Rattus norvegicus 81 LOC317471 ENSRNOG00000025637 ENSRNOT00000037047 2 1 1 60 X 29520735 29520756 ATACACCGAGAAGTATCCTACC 59 29520776 29520795 CTTGGGTTTGAAGGACTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC317471 ENSRNOG00000025637 ENSRNOT00000037047 3 1 1 60 X 29521870 29521889 AAGGAAATTCAAAGGTGCCC 59 29521911 29521930 CCTCATCAAAGATGTAGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 3 2 2 80 20 50447314 50448806 TCCTAAAGGGAAGAATGAAGGTC 60 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Chsy1 ENSRNOG00000012698 ENSRNOT00000016939 3 1 1 80 1 127025942 127068622 CGTCTGGTCATATGAGATGC 58 127068660 127068683 CTATGGAGATCTCTAATGTACCCT 59 NA Rattus norvegicus 81 LOC679811 ENSRNOG00000009837 ENSRNOT00000013260 3 1 1 80 2 182898857 182898875 TCCTCTACCTGGAACACTC 58 182898255 182898813 TGTGAGGTAGGATGGAGAG 58 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 3 2 2 80 8 119508814 119508832 GAACACTACCCAATGCCAC 59 119507083 119508772 CAACTTCGATCAGTTCTCGAC 59 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 2 2 2 101 1 101085490 101085509 TTTCCAGTACGACCATGAGG 60 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 2 1 1 61 14 72889365 72889386 TGTGAAAGGCCAATTTCATGAG 60 72889408 72889701 TGCATAGGACTGTGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Hspa4 ENSRNOG00000016596 ENSRNOT00000023628 1 1 1 80 10 38626079 38628460 CTGTGTTGTTTCGGTTCCT 58 38626017 38626035 TTGAGACCAGCAATCTGTG 58 NA Rattus norvegicus 81 Ube2m ENSRNOG00000027514 ENSRNOT00000031007 2 1 1 80 1 65538311 65539329 GATTCAGAAGGACATTAACGAGC 60 65539369 65539387 AAGTTGAGGAGGTCGTCTG 59 NA Rattus norvegicus 81 Armcx5 ENSRNOG00000003187 ENSRNOT00000004252 2 1 1 60 X 106254768 106254788 CAAGCCAATACAAGAGAACTG 57 106254809 106254828 GAAAGTGAGCAACCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armcx5 ENSRNOG00000003187 ENSRNOT00000004252 3 1 1 60 X 106254064 106254084 GCAGGTTTATTGTCCTAGTCC 59 106254104 106254124 TTCCCTTCTGGAGGTAAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809,ENSRNOT00000080174 3 3 5 81 20 4810732 4812491 CTTGAACAGCTCGACATGC 60 4810669 4810688 CACTGAACATCATGACCTGC 59 NA Rattus norvegicus 81 Defb22 ENSRNOG00000007525 ENSRNOT00000009913 3 1 1 95 3 147962147 147965793 ACTTGGTCACAGGTAACTGG 60 147962071 147962089 CAGGGTCTGTCTGGTACTC 59 NA Rattus norvegicus 81 LOC100910559 ENSRNOG00000047090 ENSRNOT00000048564 1 1 1 60 7 13674656 13674674 ATGTGCCTCTCATCTTTCC 57 13674697 13674716 GATGTATACTCCGATGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr114 ENSRNOG00000048293 ENSRNOT00000047399 1 1 1 60 1 168710080 168710098 CTTTGACCGCTACATTGCT 59 168710038 168710058 GTCATTGGTTAGGATGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2aipnl ENSRNOG00000005024 ENSRNOT00000006708 1 1 1 84 10 37422886 37424949 GGTTGCAGTTACAATAAAGACC 58 37424994 37425012 TTGTAAACTGTGGCAGGTC 58 NA Rattus norvegicus 81 Tmem167b ENSRNOG00000042160 ENSRNOT00000023728 3 1 1 61 2 211349065 211350216 TTACAAAGCTGCTGTGATTGG 60 211349024 211349042 TTACGATGCAGGCAATTGC 60 NA DesignRelaxed Rattus norvegicus 81 Olr1572 ENSRNOG00000024527 ENSRNOT00000037311 2 1 1 60 12 13478453 13478471 TAGCTTGCTGTTGTTTGGG 59 13478493 13478513 TGGAATATAGCGGTGGTAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apon ENSRNOG00000033466 ENSRNOT00000043908 3 1 1 100 7 2676980 2677164 TTCAGACAGGACTGTCCTG 59 2676898 2676917 CTGAGTCTTCCATGGAAAGG 58 NA InUTR Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 1 2 2 80 8 22868391 22868411 GCTGATGACCTAGAACTACTG 58 22867274 22868350 GTCCAACTTTCCATCCTCTG 58 NA Rattus norvegicus 81 LOC100363319 ENSRNOG00000028988 ENSRNOT00000041268 2 1 1 60 7 91756791 91756809 GGCTAAAGGAGACAAAGCC 59 91756749 91756770 AGACAACTTTGCAGATCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000047779 2 1 3 87 20 4772559 4772671 CAGAGATGGGAGCCTTCTC 59 4772490 4772508 CTACAAAGACAGCCACAGC 59 NA Rattus norvegicus 81 Tgfbr3 ENSRNOG00000002093 ENSRNOT00000002867 3 1 1 80 14 3651843 3651864 CGATAATGGATTTCCTGGAGAC 59 3651905 3652139 CTGCAGTTAAACACCACCA 58 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487,ENSRNOT00000085210 3 2 2 81 10 95259395 95261696 GATGAGTCCAAGTTCTATATTGGC 60 95259337 95259355 CCTCCTTCTCTGTGATGCC 60 NA Rattus norvegicus 81 Creg2 ENSRNOG00000013991 ENSRNOT00000046557 3 1 1 80 9 46398811 46398829 GTGAAGAACCCTGTAGCCT 59 46373643 46375943 GTCATCAGGTTCATCCAGC 58 NA Rattus norvegicus 81 LOC100361854 ENSRNOG00000029512 ENSRNOT00000051134 2 1 1 60 X 115495839 115495857 GCTTCCCAAGCTCTATGTC 58 115495797 115495816 AACCTTGCTATGAATGGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 3 2 2 61 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794546 117794565 GAACCACGGTAGTAGTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Nlrp5 ENSRNOG00000022994 ENSRNOT00000041542 3 1 1 80 1 71471077 71471097 ACGATGACATCAAGTTAGCCT 60 71469343 71471036 ACTCACAGGAATCCAACCTC 60 NA Rattus norvegicus 81 Olr1105 ENSRNOG00000032839 ENSRNOT00000051304 1 1 1 60 7 139953898 139953918 CTGTTCCTTCTGGTTTACCTC 58 139953858 139953877 CAATCACGAACAACATCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tom1l1 ENSRNOG00000002474 ENSRNOT00000003369 2 1 1 80 10 78191100 78201210 TCCTGAGGAAACTTTACAAGAC 58 78191041 78191061 CGTCTTCATTCTCAACTACCA 58 NA Rattus norvegicus 81 Pstpip1 ENSRNOG00000016413 ENSRNOT00000063930 2 1 1 83 8 60797061 60797079 GAACTACTACGACCGGGAG 59 60797123 60797910 CCAGAGAACCTCTTTATCACAC 59 NA Rattus norvegicus 81 Shroom1 ENSRNOG00000007431 ENSRNOT00000074769 3 1 1 95 10 38821580 38821598 GTTCAGAAAGGACTGTGGC 59 38821738 38822355 GAGTCAAGAACCTGGAAAGC 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000051016 ENSRNOT00000074521 1 1 1 82 2 36093344 36093362 TTCTCAGCAACATGAAGCC 59 36093408 36094989 GCTCACAGCATCTACAGAG 58 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000051016 ENSRNOT00000074521 2 1 1 82 2 36093346 36093364 CTCAGCAACATGAAGCCAG 59 36093410 36094991 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Tex15 ENSRNOG00000007748 ENSRNOT00000034325 3 1 1 80 16 62327313 62329521 CTAAGAGGCTTGAAAGAGCA 58 62327252 62327271 TGACAGTAGCATCTTTCCCT 59 NA Rattus norvegicus 81 Topaz1 ENSRNOG00000025601 ENSRNOT00000036545 2 1 1 80 8 131837876 131839315 CAGAACTCTCAAGAAGCAATGG 60 131839353 131839374 GTTACTTTCTATGCAGGCATCC 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171,ENSRNOT00000083387 3 2 2 83 9 1313267 1313285 AGACATCCTCTGCAGTCAG 59 1313332 1363303 ACAGGAATCTCCTCTTGGC 59 NA Rattus norvegicus 81 Scn7a ENSRNOG00000029342 ENSRNOT00000041096 3 1 1 80 3 52844785 52844805 AATTAGTGTTCTCACCGACAG 58 52843105 52844745 AGCAAAGTATTCTCTACTGCC 58 NA Rattus norvegicus 81 Fbxo32 ENSRNOG00000006738 ENSRNOT00000010361 3 1 1 81 7 98077053 98077855 GTAGTACTGAAAGTTCTTGAAGACC 60 98076996 98077016 TGCATAAGGATGTGTAGAGGG 59 NA Rattus norvegicus 81 Il6st ENSRNOG00000013963 ENSRNOT00000018877 1 1 1 80 2 44300001 44303548 ACATATGAAGACAGACCATCCA 59 44303588 44303607 TGCAGACCTATACTCCTGTG 59 NA Rattus norvegicus 81 Mmab ENSRNOG00000049426 ENSRNOT00000072511 1 1 1 87 12 47927276 47927294 CACGGGAGAAAGAAGACCT 59 47927345 47927897 CATGGCAAACCCAATAGCC 60 NA Rattus norvegicus 81 RGD1306941 ENSRNOG00000010185 ENSRNOT00000013511 1 1 1 94 9 64066827 64066845 CAATGAACTGCTCCTGCTG 59 64066902 64072571 CATGGTAATTCTGCACGTCC 59 NA Rattus norvegicus 81 Nipal3 ENSRNOG00000037165 ENSRNOT00000025075 1 1 1 80 5 153816105 153816124 CTACGACTCCTCCTTGATCG 60 153814764 153816063 AGGTAGAAGATCGAACCTGC 59 NA Rattus norvegicus 81 LOC687430 ENSRNOG00000000943 ENSRNOT00000001251 1 1 1 60 12 31258309 31258327 GGGATTAACATGGTGCTGG 59 31258349 31258369 GTTCCTTGTAAGAAATGCCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp717 ENSRNOG00000014331 ENSRNOT00000019204 1 1 1 80 8 23282764 23282787 CTTAAACTTAGAACAGGGACTTGG 60 23280840 23282727 TTCCCTTTGTCGATACCTGAG 60 NA Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000086867 2 1 2 80 1 64930785 64930803 ACAGGAGTAAACTGGGCAC 60 64930845 64931178 AGTAAGATGAGGGAACTGCTG 60 NA Rattus norvegicus 81 Bbs1 ENSRNOG00000019832 ENSRNOT00000026915 3 1 1 80 1 220149900 220149918 CCAGGACTCAGTTACCCAC 59 220149595 220149858 CACGAGCACCTTGATTATGTC 60 NA Rattus norvegicus 81 LOC691141 ENSRNOG00000033256 ENSRNOT00000041091 1 1 1 80 8 22566861 22570852 GTGAGGAAAGCTAAGGCCA 60 22571453 22571473 TGTGTTGGTGAAGTTGATCTG 59 NA Rattus norvegicus 81 LOC691141 ENSRNOG00000033256 ENSRNOT00000041091 3 1 1 80 8 22571462 22572332 TTCACCAACACAGACATGTC 59 22575544 22575566 GGTTACCATTGAGTCTTCTTGAG 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000077863 1 2 6 108 5 158125985 158126003 GTACTCAGCAGTTTACGCG 59 158126075 158127824 GATCTCCCTGAGTAGCTGC 59 NA Rattus norvegicus 81 LOC100910294 ENSRNOG00000046661 ENSRNOT00000072622 3 1 1 60 8 42846868 42846889 TGATCCTGCTCATCATAGTCAG 60 42846829 42846850 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr49 ENSRNOG00000015444 ENSRNOT00000020699 1 1 1 60 1 168028468 168028486 TATGTCCACTTCCTGCTCC 59 168028426 168028447 CCTTCATCTTGACACTGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtp3 ENSRNOG00000037167 ENSRNOT00000056100 1 1 1 83 8 119264346 119264364 AGACAAGGAGCTTCTTCCC 59 119262335 119264299 GAAGAACAGTGGAACCTGG 58 NA Rattus norvegicus 81 LOC691491 ENSRNOG00000045737 ENSRNOT00000048862 2 1 1 86 16 66381093 66381112 AAGTGTCAATTCGAGAGGGA 59 66381161 66382521 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Scamp5 ENSRNOG00000054008 ENSRNOT00000080012 1 1 1 80 8 62225222 62226174 CAAGGCCTTCAAGACAGAC 59 62225160 62225178 ATGATGCTGATGACCAGCT 59 NA Rattus norvegicus 81 Vps33b ENSRNOG00000013149 ENSRNOT00000017862 3 1 1 80 1 142061349 142065880 TCTGCTAGAACAGCTTCCT 58 142065924 142065942 ACGTTAGCAATTCGATCCA 57 NA Rattus norvegicus 81 LOC100360835 ENSRNOG00000000423 ENSRNOT00000000484 3 1 1 124 20 4318131 4318256 GCTTTGTTAAAGGACGCCA 59 4318025 4318043 ATGGTAGGCAAGACCTAGC 59 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 3 2 2 80 1 73730944 73731240 CAGTGCACAATACGTTTCTC 58 73730883 73730901 TACTGTTGGTACCACTGGT 58 NA Rattus norvegicus 81 Prpf4 ENSRNOG00000014777 ENSRNOT00000019910 1 1 1 80 5 78276256 78276274 ATTGAAGGCCATACAGTCC 57 78276318 78279042 ACGGTCATAACAGGTTGTG 58 NA Rattus norvegicus 81 Olr89 ENSRNOG00000050189 ENSRNOT00000072397 3 1 1 60 1 168411890 168411910 TTCTAGGTCGGATGATAGTGG 59 168411932 168411950 GGTAACAGGCCTACAAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mast4 ENSRNOG00000010720 ENSRNOT00000061032 3 1 1 80 2 32497935 32497956 CGTTTATTAAGCAGCTAGTCCG 60 32496561 32497896 GATCAAATTCCAAGCACTCCA 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 2 1 1 66 2 42727711 42727730 CTTGGACTGTGGTACTGAGG 60 42727759 42727807 CCCAATCTGCTTAGCTCGA 60 NA DesignNoJunction Rattus norvegicus 81 Olr142 ENSRNOG00000016954 ENSRNOT00000022740 2 1 1 60 1 169229499 169229520 GTCTATTTGTTTGTACCTCCCA 58 169229460 169229479 TCTCCTTGGTCTTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360154 ENSRNOG00000038864 ENSRNOT00000059383 1 1 1 80 8 50604895 50604914 CAGGCCGATTTAATGGTCAG 59 50604955 50605006 TAGAATCGGAGATAGACTCGC 59 NA Rattus norvegicus 81 Inafm1 ENSRNOG00000049661 ENSRNOT00000071098 3 1 1 239 1 78212247 78212265 GTCTGATAGGGCGTGACTC 60 78212026 78212044 AGTATACCGCAAGCAACAC 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000012806,ENSRNOT00000047571 1 2 2 80 3 82943526 82958037 CTTTCCATTTGCAAGGTGAC 58 82936628 82936648 AGAGGAGATGTTGAGAATCAC 57 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 2 1 1 65 3 153949310 153951982 GATTCAAAGGAAGATGATTCGG 58 153949266 153949284 CTCAGATGGTCCTTTGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Ccser2 ENSRNOG00000022781 ENSRNOT00000016494 3 1 1 80 16 14142618 14142636 GGACCATTACCACCTTAGC 58 14131509 14142576 TCTCTATAAGGAGAGCCTCTG 58 NA Rattus norvegicus 81 A4gnt ENSRNOG00000042649 ENSRNOT00000039690 2 1 1 80 8 107859770 107865184 GTACACCAAAGTCAACAGCA 59 107865226 107865245 TTCCAGATAATAGCCAGGCG 60 NA Rattus norvegicus 81 Scaper ENSRNOG00000006864 ENSRNOT00000009169 2 1 1 80 8 60452220 60453295 CTGTGCAGGAACGTAAGAG 58 60452158 60452177 CTTGCTCTTTCCTCTTCGTC 59 NA Rattus norvegicus 81 Mthfs ENSRNOG00000013229 ENSRNOT00000017879 3 1 1 88 8 96569000 96569021 TTACTTCCCAAGACATCTTGGA 59 96569070 96611997 ATGAGGTCAAGTCCACCAG 59 NA Rattus norvegicus 81 Mettl14 ENSRNOG00000015250 ENSRNOT00000020574,ENSRNOT00000065222 2 2 2 80 2 227577847 227578221 ACCTTCCTTAAGGGAACGC 60 227577785 227577805 CTGAGGTCTATGTCCAGTGTC 60 NA Rattus norvegicus 81 Cyp1a1 ENSRNOG00000019500 ENSRNOT00000026473 3 1 1 80 8 62476622 62476644 AGTCTGAATGGCTTCTATATCCC 60 62476683 62476848 CCATAGTTCCTGGTCATGGT 59 NA Rattus norvegicus 81 B3gat1 ENSRNOG00000007142 ENSRNOT00000009825 1 1 1 80 8 27800416 27800434 AGGAAAGCAGTCTCCTTCG 59 27800477 27801087 AGACCAGGATCTTGGTACAG 59 NA Rattus norvegicus 81 Eepd1 ENSRNOG00000006931 ENSRNOT00000009342 3 1 1 118 8 26755384 26757632 GAAAGTGTTCACGGGTCAC 59 26757714 26757732 ACAATTCAGCAAGCACAGG 59 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 3 2 2 80 8 132860183 132860202 GAAGACACTGAAGACATGCC 59 132852087 132860144 GGGTAATTTGATCATCAGCTCTC 59 NA Rattus norvegicus 81 RGD1562839 ENSRNOG00000045767 ENSRNOT00000048115 3 1 1 60 8 60751746 60751765 CACATCAAGCACTGGAAGAG 59 60751705 60751725 TCTGATCATTCTCCTTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edc3 ENSRNOG00000019579 ENSRNOT00000026492 2 1 1 80 8 62486652 62486671 GACCATTTCTCTTACTCGGC 59 62486714 62489551 GTAATATCACCTGCCCGGA 59 NA Rattus norvegicus 81 Olr1328 ENSRNOG00000061713 ENSRNOT00000080504 2 1 1 60 8 43764257 43764278 TGTTGTCATGTCTCATCATCTC 58 43764296 43764317 AACACCCAAAGTATAAACTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 3 2 2 80 16 72018787 72019645 CATACTTACTGGCATTTGTGGAG 60 72019684 72019703 CACCATAGATCGGTTTGCAC 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000077635 3 1 8 82 20 4443810 4443828 GGACTACCAGGTCACTGTC 59 4443872 4444024 CATCGATCATGGTAGTGATGG 59 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 3 2 2 80 2 52397468 52397489 ACTTCTGGAAAGAGTGAATTCG 59 52397527 52402881 TTAACATGAAGGATGACAGCAG 59 NA Rattus norvegicus 81 Atg13 ENSRNOG00000016984 ENSRNOT00000022841 1 1 1 80 3 80601388 80601407 GAAACTGATCTCAGTTCCCA 57 80599724 80601347 AATCACTTGGACAGTCTTGAG 58 NA Rattus norvegicus 81 Atg13 ENSRNOG00000016984 ENSRNOT00000022841 3 1 1 80 3 80601389 80601408 GGAAACTGATCTCAGTTCCC 58 80599725 80601347 ATCACTTGGACAGTCTTGAG 57 NA Rattus norvegicus 81 AABR07070046.1 ENSRNOG00000039200 ENSRNOT00000059997 2 1 1 91 8 45797689 45806548 TCTACTTCAAATGGCTGGC 58 45806603 45806621 CATCAGTCTGCAGTCTCTG 58 NA Rattus norvegicus 81 Rpp25 ENSRNOG00000018812 ENSRNOT00000025410 3 1 1 65 8 62284044 62284062 AATCTGCAGCTGGAGAAGG 60 62284091 62284109 GGTCCTCATTCTCAGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc110 ENSRNOG00000045697 ENSRNOT00000074490 2 1 1 86 16 47160703 47162036 AAGGATTTGCCTAACAAGACAC 59 47160638 47160658 CATTGAATGGAGAGTCTTGGG 59 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884,ENSRNOT00000088082 2 2 2 80 5 159521402 159521421 GTATGCTGTCTGCATCTTCC 59 159521463 159521567 AGAGTCATGCTTTGCTTCCT 60 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 3 2 2 80 20 4379799 4379994 AAAGAAAGTTTGGGAGTGTGC 60 4379739 4379759 GTACACTGGTTGACTGTAGGA 59 NA Rattus norvegicus 81 Ostm1 ENSRNOG00000037647 ENSRNOT00000057116 1 1 1 81 20 47408597 47408617 GACAGAATGCAGATAGTTGTG 57 47408659 47420634 TTGTTAGGCAATTTGCACAG 58 NA Rattus norvegicus 81 Ostm1 ENSRNOG00000037647 ENSRNOT00000057116 3 1 1 83 20 47427653 47427671 TTCTCTTTCTGCCTGTCGT 59 47427717 47429844 GACGTTTGGGTAGAATGAGC 59 NA Rattus norvegicus 81 LOC683897 ENSRNOG00000047118 ENSRNOT00000072716 1 1 1 80 20 48276205 48276451 GGAAGAGCTTAAAGAGACGG 58 48276144 48276164 GTTAATGTGGGAAGTGGTAGG 58 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000082091 3 1 2 104 16 60426537 60426555 CTTCAGGCTCTCCCATGAG 60 60419313 60419331 GTATTCTATGTCCACGGCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1562618 ENSRNOG00000026238 ENSRNOT00000033397 3 1 1 89 8 63287491 63287509 CGCATGAAGATGGTCATCG 59 63287562 63296310 GATCTGACTCACCACCTCC 59 NA Rattus norvegicus 81 Lpar1 ENSRNOG00000013656 ENSRNOT00000044348 1 1 1 81 5 75603509 75603528 CATAGTTCTGGACCCAGGAG 59 75559378 75603465 CAATAAAGGCACCCAGCAC 60 NA Rattus norvegicus 81 Lpar1 ENSRNOG00000013656 ENSRNOT00000044348 2 1 1 82 5 75603511 75603529 GCATAGTTCTGGACCCAGG 60 75559378 75603465 CAATAAAGGCACCCAGCAC 60 NA Rattus norvegicus 81 Mettl24 ENSRNOG00000024221 ENSRNOT00000036766 2 1 1 81 20 48649175 48656898 GCCTCTACTCTTTAGGGCTG 60 48649113 48649131 AAACGATGCACTTCACACC 59 NA Rattus norvegicus 81 AABR07070824.1 ENSRNOG00000050216 ENSRNOT00000073726 1 1 1 62 8 85749872 85749892 CCTATACTTGCTCCATCTGTG 58 85749830 85749848 CTTTCCGTGCCTTTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690478 ENSRNOG00000043302 ENSRNOT00000064565 2 1 1 60 20 11655998 11656016 GTGACCTGAGCTACAACAG 58 11656038 11656058 GAGTCAGTACAAGAGTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wasf1 ENSRNOG00000047476 ENSRNOT00000073091 2 1 1 81 20 48473714 48473735 ATTAAGAACGAGCTGGAATGTG 59 48468981 48473678 CAGCATATTTACTTAGGCTACTCAG 59 NA Rattus norvegicus 81 Tbc1d21 ENSRNOG00000008737 ENSRNOT00000011820,ENSRNOT00000078666 2 2 2 80 8 63146094 63146114 GTTCCTTACAGGGTACTACTC 57 63143297 63146055 TTATAGTTCCTCCTTCTGTTGC 58 NA Rattus norvegicus 81 Aim1 ENSRNOG00000025998 ENSRNOT00000036753 1 1 1 80 20 48937543 48937563 GAAACAGTCAATCTCCGATCC 59 48935418 48937502 ATAGGTGACCCATATGCCAC 59 NA Rattus norvegicus 81 Olr1702 ENSRNOG00000050738 ENSRNOT00000041697 3 1 1 60 20 1111551 1111571 ATCCTAACAGCTCCTATGCAC 60 1111593 1111611 ACCACGGTATACAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sim1 ENSRNOG00000037600 ENSRNOT00000057010 1 1 1 80 20 55609970 55637042 AACTACGTCCTCACAGACAC 60 55637084 55637103 GGAGAAAGTGGGCTTAGAGG 60 NA Rattus norvegicus 81 RGD1559903 ENSRNOG00000000607 ENSRNOT00000000745 1 1 1 60 20 17751023 17751042 GTACAAACTCGACATCGTCC 59 17751064 17751083 GGGAGCCAAATATGTCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910894 ENSRNOG00000050769 ENSRNOT00000072544 2 1 1 60 20 1124355 1124375 CTGAAGCACCTTTCCATTCTG 60 1124394 1124415 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pragmin ENSRNOG00000011407 ENSRNOT00000015166 1 1 1 80 16 59713766 59716342 GTTCCAAAGGTCAACTGGAG 59 59713705 59713723 GCCGAGGTAAACTATTGGC 59 NA Rattus norvegicus 81 LOC100912186 ENSRNOG00000050017 ENSRNOT00000073897 1 1 1 60 8 42348568 42348588 TTATGTACCTAAAGCCCTCCT 58 42348609 42348628 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1683 ENSRNOG00000047702 ENSRNOT00000047478 2 1 1 60 20 556124 556145 GTAGTAACTCCTACACTGAACC 58 556085 556106 CTCCCTTTACATCCTTATTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000084375,ENSRNOT00000087712,ENSRNOT00000087134 1 4 4 80 3 56871803 56872984 TTGCTCAAGATCTGCTTCCA 60 56873026 56873045 TGAGGAGTATGTCAACCACC 59 NA Rattus norvegicus 81 Ckap2 ENSRNOG00000024650 ENSRNOT00000029266 2 1 1 80 16 74763630 74763651 AAGACGAGCAGAGATTATTCAC 58 74763689 74764313 TTGGGCATCCCTTATTAATGAG 58 NA Rattus norvegicus 81 Spag4 ENSRNOG00000019566 ENSRNOT00000026578 3 1 1 80 3 152144601 152144619 CAACCTTCTCCCGATACTG 57 152144663 152145009 TGAAAGAAGAGGCTCAGGA 58 NA Rattus norvegicus 81 Sfrp1 ENSRNOG00000017783 ENSRNOT00000024128 3 1 1 122 16 73410325 73410343 GTTCTTCGGCTTCTACTGG 58 73405376 73410239 CACACTGTTGTACCTTGGG 58 NA Rattus norvegicus 81 Agpat5 ENSRNOG00000028623 ENSRNOT00000031291 3 1 1 80 16 75818177 75818195 TCACAGTGGTTTACGAAGG 57 75816786 75818134 GTTTGCAGAGAAACTCAGTC 57 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126,ENSRNOT00000079020 1 2 2 80 3 52599714 52599736 CCATTAAATCTCTACGGACACTG 59 52597802 52599674 TGACCACTACCCTCATTCC 58 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113,ENSRNOT00000064400 1 2 2 82 3 171780789 171781335 GATCTTACTGATGTCAGAGAAGTC 59 171781374 171781394 CTGGTTTCTACAAAGATGGCA 59 NA Rattus norvegicus 81 Myom2 ENSRNOG00000011754 ENSRNOT00000015908 3 1 1 80 16 79587942 79589538 GAAGGCAAGACCTTGAACC 59 79587880 79587900 GTCCTTGTCGTTCTTAAACCA 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634,ENSRNOT00000046115 2 2 2 80 5 162246509 162247046 GAAAGGTTTGCTCCAGTAGG 59 162247086 162247107 CAGCCCATATTCCAGATAACTC 59 NA Rattus norvegicus 81 Lrit1 ENSRNOG00000012790 ENSRNOT00000017773 2 1 1 81 16 14309256 14309274 CTACTGGATACGTGGGCTC 59 14309319 14311755 TGTCCTGAAGCCCTAAGAC 59 NA Rattus norvegicus 81 Fbxo25 ENSRNOG00000042464 ENSRNOT00000065526 2 1 1 80 16 80785968 80788909 CTTATGTGGTCAAACTACTGC 57 80785908 80785927 TGAAGTAGTTCTTCTGTGCC 58 NA Rattus norvegicus 81 Fbxo25 ENSRNOG00000042464 ENSRNOT00000065526 3 1 1 80 16 80784495 80784513 GATAGAGCCATGTGCTCTG 58 80780905 80781631 GTGTTTACCTGTTTGTTGAGC 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740,ENSRNOT00000073240,ENSRNOT00000026546 2 3 4 81 16 81679493 81684922 GAATACTGCCTGATTACTATAGCC 59 81684962 81684980 TTCATCCTCACCAGCTCTG 59 NA Rattus norvegicus 81 Clic4 ENSRNOG00000018109 ENSRNOT00000024464 3 1 1 80 5 153569096 153570028 CTTCACATTGTCAAGGTGGTG 60 153569036 153569054 CAGGTATCTCCAGATGCCC 59 NA Rattus norvegicus 81 Bpifa1 ENSRNOG00000013859 ENSRNOT00000018581 2 1 1 80 3 149627012 149627310 CCAAGTGAATATGCCCGTG 59 149627353 149627372 TTCATGGCTACAATCTCTGC 58 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 2 1 1 90 3 171302446 171302464 TGAGCCACTACAAGCTGTC 60 171296484 171302392 CATCCTTCCGAGGACAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Brf2 ENSRNOG00000012739 ENSRNOT00000017324 3 1 1 87 16 69092362 69092381 CAGATAGTGAAGCTTCTGGG 58 69092431 69093449 GGAACAGTTTGAAGCTGCT 59 NA Rattus norvegicus 81 Gsr ENSRNOG00000014915 ENSRNOT00000020252,ENSRNOT00000090036 2 2 2 80 16 62226129 62226150 TCGGAATTCATACATGATCACG 59 62225060 62226089 CTTCTCCTTGATGACATGCC 59 NA Rattus norvegicus 81 Ankrd10 ENSRNOG00000013618 ENSRNOT00000018870 1 1 1 80 16 83222384 83222404 GGAACCAATCGAAAGAGATGC 60 83222446 83224746 ATCCAGGCTTGGAACTCTG 59 NA Rattus norvegicus 81 Ankrd10 ENSRNOG00000013618 ENSRNOT00000018870 2 1 1 81 16 83222385 83222405 GAACCAATCGAAAGAGATGCT 59 83222448 83224748 TGATCCAGGCTTGGAACTC 59 NA Rattus norvegicus 81 Traf6 ENSRNOG00000004639 ENSRNOT00000006148 2 1 1 80 3 91265005 91266224 TATGAAGAGAAAGAGATCCACG 58 91266262 91266283 TCTTATGAGGATTGTACCACAG 57 NA Rattus norvegicus 81 Ankle1 ENSRNOG00000017156 ENSRNOT00000023065 2 1 1 85 16 19803366 19803384 TCTCTACACTGCTTCCAGC 59 19803433 19803636 AGTGTCTGGAGACCTAGGG 60 NA Rattus norvegicus 81 Adam9 ENSRNOG00000017231 ENSRNOT00000041330 3 1 1 80 16 71823167 71823191 CGACTTTGTAGTTTATACCTACGAC 60 71823228 71828789 CGGTAATGGCAATGACTCTG 59 NA Rattus norvegicus 81 Mrpl41 ENSRNOG00000029875 ENSRNOT00000044802 1 1 1 101 3 2181889 2181907 TTTAAACGGCTAAGGCTGC 59 2181593 2181824 TAAATCAGCTCTGGGCTGG 60 NA InUTR Rattus norvegicus 81 LOC686662 ENSRNOG00000042867 ENSRNOT00000064470 2 1 1 60 16 81479614 81480637 TCAAGAAGTTGAAGATGGAGG 58 81480658 81480677 AGCAGGTAGTTGTTTCTGTC 58 NA DesignRelaxed Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000087095,ENSRNOT00000023352,ENSRNOT00000079096,ENSRNOT00000043170 3 4 4 80 16 81849006 81849218 AGTCCTTGAATATGACTGCTG 58 81848946 81848964 TTGCGTTGTACCAGATCTC 58 NA Rattus norvegicus 81 Fam83c ENSRNOG00000046772 ENSRNOT00000073178 1 1 1 80 3 151367231 151367588 AGTTACAGCTTCACTTGGCT 60 151367170 151367189 AAAGTCTTCCACAATGTGGC 59 NA Rattus norvegicus 81 Mtch2 ENSRNOG00000058658 ENSRNOT00000079709 1 1 1 80 3 79680571 79680590 GGCTTAACTCCAAGACTGTG 59 79680631 79683813 CTCACACTCCTGGTAATACTG 58 NA Rattus norvegicus 81 Coprs ENSRNOG00000000111 ENSRNOT00000000123 3 1 1 81 16 80831012 80831030 ATGGAACAGGCTTCTGGTC 60 80831073 80831626 CATCAGCATCGTAAGGATTCC 59 NA Rattus norvegicus 81 AABR07024666.1 ENSRNOG00000049047 ENSRNOT00000023369 3 1 1 60 16 11214836 11214855 GTAAAGTTCAAGGTCCGCTG 59 11214795 11214815 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtfdc1 ENSRNOG00000005083 ENSRNOT00000006884 2 1 1 80 3 170448084 170448106 GGAACTACTGTACTCTAAGTCAG 58 170448143 170448745 CATCTTTGTTATACAGTCTGCC 57 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 1 1 1 62 16 82439226 82439360 TCGTCATATTTCCTGAACTGTG 59 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000089329,ENSRNOT00000068416 1 2 2 80 16 82200666 82200690 GAATAAATGGTCAATCCTCTACCTC 59 82200726 82201684 GCATAGCTAGTTACCTTGCTG 59 NA Rattus norvegicus 81 LOC100909556 ENSRNOG00000045875 ENSRNOT00000072097 2 1 1 110 12 20809022 20809598 CAACCCTAGTAAGGCTCCTC 59 20808931 20808949 GAAGACATGGAAGGCTGTG 59 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375 2 1 2 119 2 186439634 186514928 TTTCTCACAAGCTTTGGCG 59 186439533 186439551 CCAGAGTAGTTGAGGAGCA 58 NA Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375 3 1 2 119 2 186439634 186514928 TTTCTCACAAGCTTTGGCG 59 186439533 186439552 CCAGAGTAGTTGAGGAGCAC 60 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 1 3 3 139 5 171571048 171571441 CTTGTGAACACTCTTGCCC 59 171571544 171571562 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 3 3 3 80 11 38046464 38051174 CTCAATTCAGAGCTCTTCTGG 59 38051216 38051234 GTGAGATGAGCTCCATGGT 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000091593 3 1 2 91 8 108791314 108801359 TAAGGACACCTGGCATTGG 60 108791241 108791261 TTCTCCTGGATCAACAAAGCT 60 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204 1 1 2 80 15 40526761 40528110 CTCCTGCTGACTACTTCAGAG 60 40526701 40526721 CTAGTTCTTCAATCTGCTGCC 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377 2 1 3 80 16 2117321 2117340 GCAATCAATCACAGATGAGC 58 2114065 2117280 GGCCAGGGTTTATTATTTCCT 58 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377 3 1 3 80 16 2114064 2117279 GGAAATAATAAACCCTGGCCC 59 2114004 2114022 ACCTGGTACATACAGCACC 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195 3 1 2 80 5 136075076 136075094 CATAGCCATGCTCATCCCT 59 136074941 136075035 ATCTGGAGAATCGAAGAGTCAC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046 2 1 6 80 1 76392718 76530891 ATGAGAAACGGCACAACTG 59 76252476 76252498 CTCCTGGAACACTTTATCAAAGG 60 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165 2 1 2 80 5 28092434 28092453 CTTATCGGAGTTTGAGCTGC 59 28063537 28092392 AACATGACCAGCTGAATCAC 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000088131 1 1 2 80 2 170283073 170283095 AGGTCGAATATGATGGACTATGG 60 170282188 170282211 TTAGAAGTACACCCTTCAGAGAC 59 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 2 3 3 80 2 184901906 184903595 TACATACAGGACTCTGCTGG 59 184903638 184903656 AGAAAGCCAAGAGAAGCCT 59 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 3 3 3 80 2 184901905 184903595 CTACATACAGGACTCTGCTGG 60 184903637 184903655 GAAAGCCAAGAGAAGCCTG 59 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000078856 1 1 2 80 11 47264336 47264355 TCTCCACCTCAGAAATACCA 58 47264396 47264417 TGAATACTGGAACATAGACGC 58 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000031254 2 1 2 109 1 89106778 89106796 GAGAGGCCATGTTCCTGAG 60 89105108 89105205 AGAAGAAAGAGCAGAATCTGCT 60 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076986 3 1 6 81 17 84358311 84426616 AAACACCAGAGACACTACCC 59 84358249 84358267 CACTTTGCTGCTTCAGACG 60 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220 2 1 2 80 11 51057311 51057329 GGGACAACCTAAAGCATGG 59 51054723 51057269 CATCTTCACCTAATGGAGGGA 59 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 2 3 3 80 9 8164431 8164449 ACCATCATCAATGTCCTGC 58 8164491 8183089 CTTATACTCCATTCGCACCTG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000070871 3 4 7 81 11 46297192 46297210 TCAAGTGAAGAGCCATGGG 60 46290880 46297147 CGTAAGTTGCAGTTCGAGG 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000050010 3 1 2 102 1 224340332 224340351 TTTATCATGGCCATGATGGC 59 224321274 224340267 TAGCTGTTGCCCTTAACGT 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408 2 1 2 99 1 224340332 224340350 TTATCATGGCCATGATGGC 58 224320087 224340270 TCTTTCCAACTTAACGTGGT 57 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000020994 1 1 2 80 1 196960492 196961778 GTGGTACAACCACTTCCAG 58 196961820 196961840 AACAATAGGATGCAGATGCAG 59 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073 1 1 2 91 1 196960420 196960438 CTATAGGGCACGTGTGAGG 60 196960490 196960854 CATTATTTGGGTTGTACCACGT 59 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 3 1 1 74 4 145145930 145145948 TCTACAAGATCTGCGCCTG 60 145121715 145121734 CATCAGGGAAGATCATGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 1 2 2 80 17 38461286 38462011 TCATTGCTCAAATTGGTTCG 57 38462053 38462072 CAGATGCAATGATGGAAGTC 57 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 1 1 1 60 1 81501871 81501889 ACTCAACCTCACTTTGCGA 60 81502205 81502223 GTTGTGCTCATACGCACTC 59 NA DesignNoJunction Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000085005 1 1 2 81 1 101503493 101503956 AAGAAAGAGACCTTGGAGGA 58 101504732 101504752 GCTTCTTCTCAAATAGCTGTC 57 NA Rattus norvegicus 81 Tulp2 ENSRNOG00000020927 ENSRNOT00000085005 3 1 2 82 1 101503492 101503956 GAAGAAAGAGACCTTGGAGGA 59 101504731 101504752 GCTTCTTCTCAAATAGCTGTCG 60 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370 1 1 2 92 1 167522964 167524814 TTGTCCATGCAGTATGCTG 58 167524870 167524888 GAGGGACTGATCATCCGAG 59 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 2 2 3 69 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383831 78383849 AGATTTACCCACCAGGAGG 58 NA DesignRelaxed Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402 2 1 2 81 1 170397177 170403330 AGGACACAGATTCCTTCTGG 59 170397115 170397133 GTGTCTTGGACCCTCATCC 60 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 3 2 2 107 1 243518368 243534147 AGTGGCAGATGAAGACCTC 59 243534218 243534236 AGATCTGGGACATGCTCTG 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000036781,ENSRNOT00000071919 2 2 3 107 15 39732047 39735102 AGATCATACACCTGTGACTCAG 59 39728177 39731985 CCTGTAGATAGAATGATACAGTCCT 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076380 2 1 5 134 7 115821782 115821801 GTAGATCGACAAGAGGAGGG 59 115823287 115825575 TTTGTTCAGCACTGTCAGG 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000022251 2 1 2 81 17 38993246 38994443 TCAATCTTGCTCCTCAGGG 59 38994488 38994506 TATGGGTGCAGAGGATACC 58 NA Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 2 2 2 80 20 6895719 6898882 TTACCCATGGAGAAGACCTC 59 6898924 6898943 TTTGGAAATGGAAGTTGGGT 58 NA Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 3 2 2 80 20 6895461 6895591 TCCTCTGGTGATCAAGACAG 59 6895633 6895652 TCTGTGACTTCAGGGTACTG 59 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000065328 2 1 2 87 15 40584587 40584605 GAGCATTTGCTTCAAGCCA 59 40584656 40586956 CCATTGCATTGAGCTTGGG 60 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665 3 1 2 80 15 40587860 40587878 TTGGAGAGTTCAGGATGGC 59 40587920 40588400 TTCAACCACTATTGCTTTGGC 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000089904 2 1 2 80 9 9143108 9143127 AAGGCAGAAGGAAGATGACC 60 9142326 9143066 TTCCTACCAAATCCAAGCCT 59 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000081708 3 1 2 80 17 18037356 18037377 ATCTGTCATACACAGAAGAACC 58 18037416 18038282 GGAAGAACTCATAGTCAGTGC 59 NA Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 2 2 2 80 X 43628856 43628878 CTTTGTGATGAGTGATTACCGAG 60 43629007 43629255 CGACACTTCATAGCAACCTG 59 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 2 3 3 80 8 109533483 109541515 ATCCCTCTACTTCAGGATGTG 59 109533423 109533442 GTAGCGGGAATGGAATTCAG 59 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060 1 1 2 102 16 18966589 18966607 TTGGGAGTTACATCCTGGC 59 18966241 18966523 ATCAAGTACCACACTCCGG 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875 1 1 4 97 1 216565237 216565255 AGCCATCTTTGTTCATCCC 58 216566192 216629194 TTGTGTCACCTTGTCTTCC 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 3 3 3 105 20 9749958 9817306 GGAAGAAAGGATACAAGACCC 58 9817373 9817391 ATGAGTGTGGACTTCCCAG 59 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000080021 3 1 2 90 10 18258425 18359730 GAACCTCAAAGGTTGTACGC 60 18250380 18250399 TCTGACATACGGGCATACAC 60 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 3 3 3 80 2 188191511 188191531 CAGCTCATTGAAGACTTCACC 59 188191573 188192626 GGGAAATTCACTGGCAGTC 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000077698 1 1 3 80 2 188174883 188184544 GAGCTGTTTGAGACGTTCC 59 188184588 188184606 TGTTACACGCTCCTCTTCC 59 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234 1 1 2 82 2 187275411 187275429 GAAAGAGTACAAGTGCGGG 59 187275475 187281076 CAGGCATCTCATCAATCCG 59 NA Rattus norvegicus 81 Abhd10 ENSRNOG00000043107 ENSRNOT00000048533,ENSRNOT00000086393 2 2 2 82 11 57492805 57493285 GACCACAGATACTGGTTGGA 59 57493330 57493348 AGCTATGACCTTCTCTGGC 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 1 3 3 80 10 4441836 4441857 GATTCTTCCAGGATTCATCCTC 58 4441896 4443388 ATAATCACTATCTGGGCATCG 58 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 2 2 2 80 11 60084766 60086078 CTGGTTTCACAGGAAAGCC 59 60086121 60086140 AGGCCTATGACATTCTGTCC 59 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000091746 1 1 2 81 X 34658826 34661125 GTAGAAAGTCCCACTCTCCA 59 34661169 34661187 GGAACATTGTGGATTGGGT 58 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010 3 1 2 81 6 11058410 11058506 ATACTCCAATACCCGGCAG 59 11058347 11058366 GGACTATATTGCGGGAGGTC 60 NA Rattus norvegicus 81 Neurl1 ENSRNOG00000020339 ENSRNOT00000076452,ENSRNOT00000054696 3 2 2 83 1 266953220 266953239 CTTCTCCAGTGTCTCCTCTC 59 266953285 267018766 CCGATGGAGTCTTTGAGGT 59 NA Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 1 2 2 80 7 15199962 15199982 AGTCTTATTAATCTCCCGCTG 57 15199809 15199920 ACACAGATGTTCCCTTTGG 58 NA Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 3 2 2 82 14 88573312 88573330 GATGACTCTGCTGAGGAGG 59 88573375 88573499 TCATCCTTCAACTCCAGCTG 60 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000075545 1 1 2 85 20 10438618 10438636 TCCTGTCTTCCACCATCAG 59 10438685 10438963 ATGGGTCATGAGCTCAGAG 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459,ENSRNOT00000060495 3 2 2 80 15 28548761 28549194 ACTTGTGTTATCAGGAGGAGC 60 28549236 28549254 TCTCCATCGTCTCTTCGTG 59 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 2 1 1 60 15 4130898 4130916 AAGGCTACCACAACTCCAG 59 4131051 4131072 CTTCCTTCTTGGCATTCTTACC 59 NA DesignNoJunction Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 2 2 3 80 10 35361918 35361938 GACTCCCTATGTGGTAACTCG 60 35361974 35363416 CAGATATCAACATTCTCCTTGTAGC 60 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 3 2 2 80 12 2548508 2549052 GTCAAAGACTGCCTTACTAAAGAC 60 2548329 2548349 ATAGTGCTTGATGAAGCTGTG 59 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 1 1 1 61 1 239223091 239223109 CAAACCACTGTCAAAGCCT 59 239209366 239209387 AAGAGTCCTTTACTGTCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939 2 1 2 81 17 43464315 43464334 ATGACCCACAGAATCATCCC 60 43464378 43464509 AGCGAGCAATCCTCTTGAG 60 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000007069 3 1 2 80 3 51749916 51751032 TTCTGTAATTCCAGGCCTG 57 51751076 51751094 GTGAGGATCATGACGTCAG 58 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291 2 1 2 80 4 174758958 174760292 AAATGGATCTCACTGTGGTC 58 174760334 174760353 GATTCATCAACTTCTGCCAC 57 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 1 2 2 81 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054946 AGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332 1 1 2 85 8 64496170 64496188 CTGACTGCATCATGCTGTC 59 64496237 64498959 CTCTCGAGCTATCAGGTGC 60 NA Rattus norvegicus 81 Pde6g ENSRNOG00000046962 ENSRNOT00000074354 3 1 2 86 10 109621047 109621529 CCTGGGAACAGATATAACCGT 59 109620981 109621000 TAGATGATGCCATACTGGGC 60 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 2 2 2 80 2 157750044 157750155 GCTAGAGCACTTCAAATTCCA 59 157749984 157750005 TTCTTGAATCTCCTCTTCTGTG 58 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000010373 1 1 3 85 5 142717683 142717702 GATTGAAGATGCTGTCTCCT 57 142721317 142722103 CATATTCTTCCTCGGTGTCAG 58 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 3 3 3 82 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528276 53529908 GGTTCACAAGCCATGATGC 60 NA Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 3 2 2 80 17 15686126 15686144 AGGACTACTCTGAGCTGGA 59 15682723 15686083 CAAATTCCACCTGGTTCTGC 60 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724 3 1 2 81 6 7882909 7882929 GCATTCGCATTTACTTGACAG 59 7882971 7886521 GACGGTGTTATAGGTTTGGC 59 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000006832 2 1 2 81 6 7882909 7882929 GCATTCGCATTTACTTGACAG 59 7882972 7885430 CCACTGACAGATGGTTTGG 59 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894 3 1 2 84 9 10164931 10164949 AATCAGTGCTGTGCTTTGG 59 10164668 10164889 CATCCAAGATATTGTCATGACTCAG 60 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072 3 1 2 81 1 192034370 192036725 CCACATGATGGCGTTTCAG 60 192036768 192036788 TGCATCCACATATTGAGTTGG 59 NA Rattus norvegicus 81 Slc25a22 ENSRNOG00000018450 ENSRNOT00000054869,ENSRNOT00000086238 2 2 2 86 1 213977332 213977598 GTATGCCAGCATGTCTGAC 59 213976471 213976489 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 2 2 2 80 1 88038173 88039265 GACACTCAAGACTCTGCTG 58 88038111 88038130 TTCGTCTTCTTCAGGTTGTC 58 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000018014 3 1 2 87 9 65340395 65342511 GGAGGACCTTAGAGTCTCC 58 65342562 65342580 TAAAGGTCGGCCTCTACTC 58 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 1 1 2 80 12 9990082 9990103 ATGGAACTTAACCAGTGATGTG 59 9988452 9990042 AGCTTAATGTCCGAGTAGCC 60 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 2 1 2 80 12 9990082 9990102 TGGAACTTAACCAGTGATGTG 58 9988451 9990041 CAGCTTAATGTCCGAGTAGC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000091236 3 1 3 83 10 38891571 38891598 GTGATAAAGTGTAGTTACAGGCC 59 38891641 38891659 GCGAATCTTCAACTCCTCC 58 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000067442 2 1 2 145 7 115908653 115908671 ACAGACACAGCAGATCCAG 59 115908286 115908545 TGGTATGAATCACTGCTGGG 60 NA InUTR Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 2 2 3 81 10 56717027 56717045 CTGAGGCTGACCAGTACTG 60 56717088 56722806 TTTACAACGAATTCCTGCTCC 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064 3 2 3 136 10 56716967 56716986 TTAACTGGGTGGAGTTTGGT 59 56717085 56722801 AACGAATTCCTGCTCCTCC 60 NA Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 1 2 2 80 5 16913699 16913718 TAACAACCATGGCCATTTGG 59 16909788 16913658 CTTGCACAATAGTCTGACAGC 60 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 2 3 3 83 12 7478996 7479015 GCACACCAGATATCGAAGAG 58 7479060 7530858 TTTCCTTGCCTTGTCATCTC 58 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 1 2 2 80 10 105137851 105137871 ATGAACTCATGCAGATGAGAC 58 105137710 105137809 TCTGAGTGATCAAGGCCTC 59 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056251 2 1 3 102 9 121862805 121862825 CGCTTTATGGTCGATTTACGA 59 121862889 121877752 CTCAGGACCTCTGGATACG 59 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000086534 1 1 3 80 9 121862876 121862895 AAAGGAAGAGTGCCGTATCC 60 121899256 121901253 TCCTTTCTCTGGACCAATCAG 60 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 1 3 3 89 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738158 97738176 CCATGACATTCAGCTGCAG 59 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000046215 1 1 2 86 2 60564107 60564125 AATGCAGGAATTCAGAGCC 58 60561393 60563570 ATCACTCAACTGCTTTGCT 58 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 2 2 2 80 9 66510826 66511915 TTACAGAAAGTTGGAGACAGG 58 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742 1 1 4 81 19 757166 757536 ACAAGAACCTCCGAATCCC 59 757581 757599 TTGGTACACTAGCTGGTCC 59 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 3 1 1 69 5 25168639 25168658 CCTGGTAAGAGACAGGAACC 60 25172438 25172456 TGAACTGGTACCAGCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 1 2 2 80 3 148804541 148804559 TACAAGAGACCACTGAGCC 59 148804603 148809500 CATGATGTTCTCTGCCCTG 58 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 2 2 2 80 3 5711845 5711863 GTCAAACAGCCTATCCCTG 58 5711906 5713771 ACAGTGTCATCCTCAATGAC 58 NA Rattus norvegicus 81 Ccdc89 ENSRNOG00000022766 ENSRNOT00000024095 1 1 1 60 1 154606714 154606732 CTTGAAACGCAGATCCGAC 59 154606756 154606774 CGAGTTGAGCAGTTCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563590 ENSRNOG00000038231 ENSRNOT00000045816 3 1 1 60 X 60989784 60989802 CTGAAGTACCTGGAGTCCC 59 60989742 60989760 ACAGGAACTCATAGCGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3597-3 ENSRNOG00000035580 ENSRNOT00000053703 2 1 1 60 1 141229437 141229456 GCACGCAGAAGTTGTTAGAG 60 141229396 141229414 ACAGAGCCGTCATAAAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat1 ENSRNOG00000031208 ENSRNOT00000052360 2 1 2 147 10 34519821 34534714 AGGTACATGGCTACTTCCC 59 34534825 34534843 CTGCAGACTGCTTCTTCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cdh18 ENSRNOG00000010535 ENSRNOT00000014013 2 1 1 80 2 74669709 74684504 ACAATGAAGATAACACAGCCAG 59 74684543 74684563 TGGGCAGATAATACACATCCT 59 NA Rattus norvegicus 81 Slc45a2 ENSRNOG00000018759 ENSRNOT00000025490 3 1 1 80 2 60995004 60995025 CATGTCCAGCACATTATACACC 60 60995065 60998689 TCCTGCTGCTTCTCTTTCTC 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000031770 1 1 3 85 1 193239867 193246176 AGAATCGTCACTGACACCA 59 193239800 193239818 TCTTTGCTTGCCAAGTCTG 59 NA Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 1 2 2 80 1 165675071 165676039 GGATGATGCCATAGCATGG 59 165667662 165667685 TAGTCTTGATATGGACTGTAGACG 59 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249 2 1 2 80 4 114922708 114922726 AAAGTGGAAGAGAAGGCTG 57 114922768 114924171 TGAAGGGAAATCTTGTTCTGG 58 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000089973 3 1 2 80 4 79895991 79896013 ACAGAGATACTATTGCTCCTCAG 59 79905299 79906814 ACTTGACAAACACCTGACG 58 NA Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 1 2 2 80 17 42813730 42813751 AGCCATAGAGCTTAACTATGGA 59 42812812 42813690 TCAATTCCAGGCTGAATCCT 59 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 3 1 1 148 10 103873188 103873207 TATCTGGAGCTCCTCAAGGA 60 103870582 103870600 TCACACTTATCCGGGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623 2 1 6 80 1 262013610 262013929 CTTTGCCAAGATGAGGTGTG 60 262013549 262013568 TCCTCAAATTCCTCATCCGT 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 3 2 4 97 20 2058454 2058655 AACCAGAGCGATAAAGTCTC 58 2058715 2058733 AAAGCATGGCTATAGTGCG 58 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000086007 1 1 4 80 20 2059772 2078312 CTCACACTGAGATGGAAACC 58 2078355 2078373 AATGGTGACAAACCCAAGG 58 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 1 2 2 83 19 25953641 25955248 TGATGAGACGGTGAAGGTG 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097 1 1 2 83 11 57458601 57460553 AACAACAGCACTTTAGAAGCC 60 57460598 57460616 TCTTTCGAGGCAGAGTGTC 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 3 2 2 80 2 118960524 118960542 CGATTCCTGGGTTCTACGA 59 118960584 118963025 AGCTAAAGATCTAGGGACCTG 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063 1 1 2 81 17 45255680 45255698 AGTAGCCAGATGGAGTCCA 60 45255741 45256028 CCTGGGTGACTCTAACTTCTG 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230 3 1 6 84 6 4311765 4311888 TGGCTTCACATTAACAGAAGG 59 4307794 4307813 AGAGGGAATCGGATGATCTC 59 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919 2 1 2 89 3 7746888 7752843 CTTTGGCACTGTGACTATCC 59 7746818 7746836 ATCACCTGAGGAGATCTGG 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 1 2 2 102 5 156289543 156290095 CAATGTGATCCAGGTGGAC 58 156291407 156291427 GTAGTTCAGATAGCCAGTCAG 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 3 2 2 103 5 156288489 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291429 ATGTAGTTCAGATAGCCAGTCAG 60 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000083438 1 1 2 86 11 53202292 53202315 CGGAAATGTGTATCTATTCCAAGG 60 53202360 53214544 CTGGAAAGGACCTTTGCTG 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597 1 1 2 92 14 79938505 79938523 TATGACGACGTCCCTTGTG 60 79933547 79935751 GTTCTTCAACTCTTCCACTGG 59 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073 2 1 4 81 3 8467306 8467325 CTGAGCACCTTTGAAGAGAC 59 8467369 8470096 GAACTTTCAGGCACAGCTC 59 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020407,ENSRNOT00000041921 3 2 4 81 3 8487986 8494327 GGACTCGTGATGATGTGGA 59 8494372 8494390 TTGGTGCTTTCAGACTGCT 60 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 1 2 2 82 2 144551513 144553592 CACATGAAGGATGTCGTGC 59 144553638 144553656 AGGTCAGTGTTGAGGTTGG 60 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 2 2 2 80 20 13761044 13761357 ATTTACTCAAAGGGCAGCAC 59 13761400 13761418 TTCCGTCTTTGAGGACAGG 59 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 3 2 2 80 8 48668967 48670198 CTGGAATTCAAGAGTATTCGGG 59 48668908 48668928 GATAATGGCACTGAACTCCTG 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 1 3 3 80 1 32118936 32118956 TCATCAATAATGTGGAGGTGG 58 32118456 32118894 TGCTGTCCATCTCTTCCTC 59 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000091085 3 1 2 115 3 77709984 77791837 TTCTTCTTGGCATTCCTGTC 58 77709888 77709906 GTCATACACCAGCCAAAGG 59 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536 1 1 2 80 9 66902635 66903406 CTCCCAAATGACCAGTGTC 58 66903448 66903468 CTGTCTTCTAGAGCATCTGTG 58 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464 1 1 2 80 4 157234382 157234401 CAGAACCGGATCTATCTCAC 57 157234444 157235039 CTTAATGAGGCTGTCACGA 57 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583 3 1 2 105 20 14649403 14651260 CTCATTGCCATCAGCATCC 59 14651329 14651347 CCTTAACCTCTTCGTCGGT 59 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000079999 3 1 3 87 9 10624633 10624653 AAAGAAGACAACCACCACG 58 10624704 10624722 GATGGAGTTGACAGCTGAC 58 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469 1 2 3 80 9 10641922 10642106 CTTGAGTTCAAGAGGCTTGC 60 10642147 10642167 CTTAAACTTGTTGCAAGGCAG 59 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314 1 1 2 80 5 167173504 167174099 AAGAAGAACAAGCCATGTCAC 59 167174138 167174159 CGTTGACAGTTGATAATTCACG 58 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 3 2 2 80 14 108446304 108446853 GACTGCCATTTCCTAGGTG 58 108448409 108448428 GGCCATTCTGGTGAATACTG 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 2 2 2 80 8 70722984 70726651 GTCACCTGAACAAGACTTCTC 59 70726691 70726711 GAGGACTATAAATGAGGGCCA 59 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 1 2 2 80 15 56772099 56772119 TACTCCCTGACAACTTCATCG 60 56772156 56776140 TATGATCATAACCCTCTTGTAGCC 60 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 2 2 2 80 12 13902578 13903161 AATTCAATGTGCTGAGCCA 58 13903202 13903223 CCTGTATCTTTGCTAGTCTTCC 58 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 1 2 2 80 11 61467131 61468658 CAACATCTATCTGCATGTCCA 58 61467071 61467091 GTCTCGATAATCTCAAAGCCA 58 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833 1 1 2 80 3 163840192 163840213 AGACTTTGGCTGTATAAATGGG 59 163813141 163829314 GAACTCATCCTTGCTCCAC 58 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833 2 1 2 80 3 163813144 163829317 CTTGTGGAGCAAGGATGAG 58 163813082 163813102 TGTCTTGACGATTTCTGATGC 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 3 2 2 67 16 19637556 19637577 ACCAGAACATAGATGATGACCA 59 19636633 19636651 CAGTCTTTCCACAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286 1 1 2 80 11 61253474 61253493 GCAATTCCTGTTCTCCACTG 59 61252346 61253434 GCTTCTCAGTCTTTGTTCTTGG 60 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 3 1 2 80 1 84891895 84891917 CCTTACTAGAGCAGGAGAAAGAG 60 84882123 84891855 AACCTGTCTCCAACTCTGG 59 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000091060 1 1 2 80 9 67774216 67779929 ATTCAATAACGGAGGAGAACTC 58 67779968 67779988 CAAGAAATCTGTACACCTCCA 58 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000081445 2 1 2 80 20 12884261 12885543 TGAGTCAAGGATGTTCGGG 59 12884199 12884218 CTTTATGGCGTCCATGAAGC 60 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 3 1 1 67 X 65335850 65335868 TGGAAAGGTAAGAAGGCCC 59 65335639 65335658 GGATTCTTGGTAGGGTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Uspl1 ENSRNOG00000000909 ENSRNOT00000001210,ENSRNOT00000072129 2 2 2 80 12 6949105 6949124 GAAGCTGTTCGAAACCTACC 59 6944182 6949064 TTACAATCTTCACCTGTGACG 58 NA Rattus norvegicus 81 Txnrd1 ENSRNOG00000009088 ENSRNOT00000013613,ENSRNOT00000089545 2 2 2 81 7 26958250 26958776 TTAACACAGTGTTGCTTGCA 59 26958188 26958206 TCATTGATCTTCACGCCCA 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910 2 1 2 80 17 46682514 46682535 AAATCCAGACTTACACCATTGC 59 46680226 46682475 TCTCTACATCAACCTGTCTCC 59 NA Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 1 2 2 80 8 107910961 107910981 TGATTCTGAGACCTCAGAGGA 60 107911023 107913472 TGTACCAGTGTTGCTGAGG 60 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000071615 2 1 3 81 10 42618641 42618660 GTGACTGTGAATCCGAACG 59 42629482 42629500 ATGTAGTGGTACCCGATGC 59 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642 3 1 3 80 18 39470828 39474231 CAAGCTATTCATCAAGCTCG 57 39476858 39476877 CACTAGAGTATTCGCTTGGT 57 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075125 1 1 5 80 15 10291852 10291878 GTGATTACGTAGTAGATCAAGTTGG 60 10291792 10291813 GAAATGGCTTCACTGATACACC 60 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866 3 1 2 104 14 85271593 85272701 ACAGCCTGATTGGAGACAG 59 85272768 85272787 AGAGGTCACTTAAGCCACTG 60 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 1 2 2 80 1 220784683 220784783 GAGGCAGAGGATCTCTTCAG 59 220784622 220784642 GCCATCTATGATGAAGCTCTC 59 NA Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674 2 1 2 85 13 48679955 48690251 CGGCCTGTCAGAAATAGGA 59 48694879 48694902 CCTGAATCTCTTCCATAATCTTCG 59 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 3 2 2 80 2 188667415 188667553 AGCTTGTGACTGTTACTTCCT 59 188667355 188667374 CCGAGAAGTCAGGAGAACAG 60 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 2 2 2 80 11 64837651 64837671 GTTCAAAGGTACGAAGGAGGA 60 64834628 64837609 GGTAGGGAAGTCAGCTCTG 59 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000002089 3 1 2 81 11 64828799 64830868 CACTGTCAAATTCCGACGC 60 64828736 64828754 CACAGGCCCTATGTAGAGG 59 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000079874 1 1 2 197 14 104250832 104268380 GTGACAGCTATATTGTGCGT 59 104268537 104274877 CATAGCATTCCAATACAACCAG 58 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 3 2 5 266 2 192604979 192604997 TGTCTTACCAACAGCAGCA 60 192616091 192616109 ATGGTGGAGGAGTTTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 1 3 3 80 2 236669100 236669118 AATCGTTCCCTTCCGAGTC 60 236669162 236680079 AAGTCTTCGTGGTGATCCG 60 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 3 3 3 80 2 236649901 236651304 CCCTACATCAAGATGATTCTGGA 60 236651343 236651362 GTTCCAGTAAATCCGGTCCA 60 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881 2 1 3 80 17 43664739 43665693 CAACTATAACCACAGTAAGGTCAC 59 43665731 43665750 ACCTCACATCCTAGGATCAC 58 NA Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 1 2 2 80 3 165520822 165522726 ACCTGAAGGTACACTACATGAC 60 165520763 165520782 TGGTATTCTCTATGGCCAGC 59 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 1 2 2 80 15 103244246 103244264 TCGAAATCAGGATGACCGT 59 103235740 103244204 TAACCAGCAAAGTTTCCTGTG 59 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000081104 2 1 2 81 7 134482358 134482514 GCTCGATTGGTATGGTCTG 58 134482295 134482313 TTCTTCCAGTCTGTCACCA 58 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 3 2 2 101 14 107792116 107794197 TCTTCTAGTTCTGCATCGGA 58 107794261 107794279 AGTTGTGGACAAGGAGGAC 59 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 1 2 2 82 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487481 69487501 TTTCCAGTTCCACAACATCAG 59 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 1 3 3 167 15 51798781 51799358 GGATTCCATTTAAGATCGGGC 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 3 2 2 81 3 91476412 91477405 CAGATGAAGATCCAGGAGGA 58 91477449 91477467 TTTCTTTGCTCAGCTCCAC 58 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346 1 1 2 135 10 107522922 107523495 CATTCCAACTTACGGAGCG 59 107520434 107521503 TCTACCATAACTGTCACTGTAGG 59 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346 2 1 2 138 10 107522922 107523495 CATTCCAACTTACGGAGCG 59 107520431 107521499 GACTCTACCATAACTGTCACTG 58 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560 3 1 2 134 5 88601663 88612315 ATCTTGCTACCGAAATCGC 58 88600078 88600096 CATTCAACTCTGCCATGGT 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 3 2 8 113 13 68703049 68707606 AGATGACCCAGATTATGATGC 58 68707681 68707699 GGCTTTAATGGTGGTTCCA 58 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000079607 3 1 2 86 17 56962227 56962246 GAAGTGCACGGTAAATTCGT 59 56961185 56962180 CGTAAGGGCCTTATCTAAAGC 59 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000088070 2 1 2 120 4 136676784 136678205 TATTCTCATCCTCAGGTGAGAG 59 136678285 136678304 CCACTTGCAGTACAACTCAG 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 2 4 4 88 1 24190586 24191685 GCTTTCATGAAACAGAGAAGGA 59 24190134 24190537 TGAACTTCAGGGTGTTTGC 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321 1 1 2 80 8 49258216 49264833 AAACAGCAGTCTGATGAGC 58 49258154 49258173 GTAGTCAAACTCATCCAGGC 58 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233 1 1 2 87 8 65686783 65736423 GTGACCAGTTCGCTTTCAG 59 65736472 65736492 AGGATACTTTCTCCACATCCC 59 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233 2 1 2 89 8 65686783 65736423 GTGACCAGTTCGCTTTCAG 59 65736473 65736494 AGAGGATACTTTCTCCACATCC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 1 3 4 81 10 67622363 67622381 TGTCTGGAGTATCTGGGCT 60 67622424 67624294 CTCTTGTTACTGTGATGGCTG 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000088988 1 1 3 114 18 56435911 56438188 CTTGTACGTCAAAGCCCAC 59 56438266 56438284 AACTTCTGAGTGAGTGGCC 60 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000089460 1 1 2 80 10 16009600 16009620 CTATTCATACCCAGGATCCGA 59 15998607 16000179 AACAATGAAGACTGACCTCTC 58 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082 2 1 2 81 4 7111908 7112348 AAGAAGGTGCTCAGGACTC 59 7111845 7111863 CTCGAGAAGTCAGGACAGC 60 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 2 3 3 84 13 50754129 50754148 AACAAGATCAGCAATGTGCC 60 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000088928 2 1 2 80 15 51240762 51242252 CACAGCAGGAAGAAGTAGC 58 51242296 51242314 GGTACACATGCTCAGTCTG 58 NA Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 2 1 1 65 10 42942679 42942697 GTACAACTCGAAAGGACGG 58 42944138 42944159 AGGAAGTTATCAGAAACCAACC 58 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000074146 3 1 7 80 17 57074600 57079369 GATGAAACTGATGAGGAGACTG 59 57082586 57082604 TCGGATCTGGTAAGTTGGC 60 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864,ENSRNOT00000058882 2 2 2 60 5 90339025 90339043 ATGGCTCCAAGGTCATACC 59 90348636 90348654 CCAGAAGCATCCACTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310 3 1 2 81 6 48809750 48857856 TCTCATCGAAGCCTTTCCG 60 48857899 48857919 GGTCTTCCTTGTCTTCTTTGC 60 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076320 3 1 5 80 13 77940820 77940839 AGAGACTGAAAGGGACTAGC 59 77940882 77942290 ATGACAGAGGAACTGCTCG 60 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076539 2 1 5 106 13 77940622 77940640 ATCCCAAGGCTCCTTTCTG 59 77940710 77942290 ATGACAGAGGAACTGCCTC 59 NA Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 2 1 1 97 10 84032659 84032677 TGGAAAGCAGCATTTGCAG 60 84033665 84033683 CCCTTGCTATAGGGAATGC 58 NA DesignNoJunction Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018340 2 1 2 80 14 81382551 81383177 AAGTCGAAGACTAAGCCTCC 59 81380632 81380652 ATGTCCATCCTCTTTAGTCCA 58 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524 3 1 2 126 13 34250323 34251490 GACATCCGAGAGGAAATACG 58 34249215 34249234 CTTTCAAGCACCTCTTTGGA 58 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 2 2 2 81 5 48579176 48579276 TGTAAAGGACATGGTGAGTG 58 48579317 48579338 GGCTTCTTTCATTAAACCTCTC 58 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614,ENSRNOT00000091827 3 2 2 82 5 48579176 48579276 TGTAAAGGACATGGTGAGTG 58 48579319 48579339 GGGCTTCTTTCATTAAACCTC 57 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614 1 1 2 80 5 48561455 48561473 TTACAACAAGATCCCGCCT 59 48561511 48574681 GTCTTTAGAGGTAAGAATCTTCCTG 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 1 3 3 80 4 125704022 125704042 GACTAATGCGGAGAAGATTGC 60 125694034 125703980 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 2 2 4 80 5 104739501 104740930 CTTTGGTGATCCAAGATTACTGG 60 104740968 104740988 GATGAACACCTCTGTTACCAC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000000756 1 1 2 100 20 19373670 19373690 GAGTCCTGTCTGTGACCTG 59 19373588 19373606 CACCTCTCCTCCACAAGTG 60 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000079698 1 1 2 80 10 17619640 17619658 AAGCTGATCGAGAGGATGG 59 17619701 17621123 AAACAGGTACTGATCCCAGC 60 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798 3 1 3 92 1 46871430 46873006 GATGCATGTGCCAAATGTC 58 46873062 46873080 CATCTGGAATTCTGCCCAC 59 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089805 1 2 4 88 2 78249580 78251288 CTACCTACTGTTACTGTTTGCT 58 78251336 78251355 GAATGGACTTGACTTTGCTG 57 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837,ENSRNOT00000082844 2 2 2 80 13 98348905 98351523 ACTAGTAGCTGTGTTCTTTCTG 58 98351563 98351582 GACATTGACGTCAAGATCCA 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837 3 1 2 80 13 98274777 98274796 GCAAATGCGCTTACATAGAG 58 98274838 98311839 TTAACTACAGCAACCTCACC 58 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000033512 3 1 3 147 8 71036626 71036644 GAACTAGGAGCTACCAGGA 58 71035721 71036515 ATCTTCCTGGTGCTTTCTG 57 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512 1 2 3 80 8 71048928 71050411 TGGACTCGTTTGGAATGAC 58 71048866 71048884 CAGCATTGACCAGGATCTG 58 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000083264 3 1 3 80 7 107470602 107474194 CTACAACAGCAACAAACCTC 57 107474235 107474255 CATGTTAAAGGTGCTCTTGAC 58 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 2 2 3 81 8 107522047 107525332 TTGGATAAACAGCAGTGTGG 59 107525376 107525394 TATAGGTTGGTGAGACGCC 59 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 3 3 3 82 3 93926445 93926463 CTACTACAAGCTGGGACGG 60 93930933 93930951 TGTCACAGGAAGCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 2 2 2 80 17 54670697 54670717 TACACCTTTGCATACAGAACC 58 54668772 54670656 CTGTGTCACATGTCTTTGCT 59 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 1 2 2 80 8 67741612 67742496 CTTCTGCTAAAGCTGATGGA 58 67742536 67742557 CATGATGAATGTGATGATGCTG 58 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 1 2 2 80 4 87243332 87243353 TGCTTATTGAACAAGGCATACC 59 87241045 87243294 CATATCCTTCCTTGAGCATGAC 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 2 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833085 TGTCAATGTTTGTGACCCA 58 NA Rattus norvegicus 81 Tmem169 ENSRNOG00000016091 ENSRNOT00000021539,ENSRNOT00000083979 3 2 2 80 9 79649556 79649574 AATCTGAAGCTGGAGATCG 57 79649616 79652302 TGTTCCACATACCATCATCTC 58 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458 3 1 3 84 19 49468479 49472218 AGAACCAGGTTACGGTCAG 59 49472265 49472284 GGCTGTGAATACTGTGTTCC 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 3 2 3 84 19 49462559 49462580 GGAAGTGATTCTGCTATGTGAG 59 49465033 49469933 CCGATGAAATTGAGTATACATGAGG 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 1 4 4 80 3 3000771 3000792 AAGGGTCATTGTCATTTGAGAC 59 3000830 3001449 CTTCTTGCCTTTGAAGGTAGTG 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000083774 1 1 4 98 3 3168428 3178668 TGACAGAAACCTTACCACAC 58 3178729 3178747 ATCTGGACCTCTAAGTCCC 58 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 2 2 2 80 15 4923227 4923247 TATCCCAGCAAATTTCACAGC 59 4921852 4923185 CTGGAGGATGTCACGACTG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 2 5 5 84 1 257590076 257592415 CATCTTTCAGAAGGGTGGC 59 257592463 257592481 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 1 2 2 80 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041797 177041817 CTCCTTAAACTTGTCTGCAGC 60 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000068748 2 1 2 80 7 143108235 143108256 GCCGTAAATGTAAACTGCC 57 143108173 143108191 CCCAATATTGGTCAGCCAG 58 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 2 2 2 80 17 27433731 27433752 GATGTGGACATAATGATGAGGT 58 27432372 27433696 GACAGTCTGGTATAGAATATTGTCC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000090799 3 1 6 80 5 47987750 47987768 GTTGTCCACCTACAAACCG 59 47987810 47988578 GGGAAGTAACCTGATATGTGG 58 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000073669 3 1 2 85 13 48649370 48649675 AATGAGGCCATGAGAGTCC 59 48649724 48649742 ATGTAGTTCCCTTGGGTGG 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977 2 1 2 80 14 45856215 45856233 CACCTGAAACTCTGTGCTG 59 45856049 45856173 GTCCCAGTAGACCTTATAGCC 59 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000065893 3 1 3 148 12 52360966 52361846 GACATTCCAACACTTCAAACTC 58 52364032 52364050 CTTTGTGCCAACCTCTAGC 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 3 3 3 109 13 48801361 48804630 AATACGCTCTTCCAGTTCCC 60 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 3 2 2 80 16 18706327 18706655 GAGTCCTTGTTCAGGTGTC 58 18706699 18706717 TCTTGGAAGTTCCGTAGGT 58 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392 3 1 2 82 10 13415272 13415290 AATGGAGCTCACTTCTGTG 58 13415336 13416597 TCTGATGTGTTGGAGAAGC 58 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000091923,ENSRNOT00000079036,ENSRNOT00000044127 1 3 3 89 7 99155552 99155724 GGAATATGGTGTGATCTTTGC 57 99155775 99155793 TTTCCCATCCCAAAGTCTC 57 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000092203 3 1 2 80 10 61188072 61188091 CTCAGGAGATAAAGTCGGAG 57 61187792 61188029 ACTTGATGAAGGGCTTCTC 57 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 1 3 3 80 5 169285361 169285379 GACGAAGGTCATCAGACCA 59 169285423 169285523 ATGAGGAGGAAGGAACCAG 58 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 1 3 3 80 5 169285361 169285379 GACGAAGGTCATCAGACCA 59 169285423 169285523 ATGAGGAGGAAGGAACCAG 58 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121 2 1 2 84 4 130172949 130342633 CTGAAGAGCAGCAGTTCTG 59 130342680 130342699 GTAGCAAGATGCGTGATGTC 60 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520 2 1 2 83 15 104095342 104095360 GTGGAAGATGTGCGTTACC 59 104095407 104101867 TGGATGTAACCATCCAGCG 60 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 3 2 2 91 17 31495003 31497409 CAACTTTGTGTTCGGTCAGAG 60 31497462 31497480 CATCCAGGACAGAGTCCAC 60 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000011432 1 1 3 80 4 23115820 23115839 CTTGGGAATCACTTCCTTGC 59 23114477 23115778 TAACCCAGTTTGGACTGGAC 60 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923 2 1 2 105 7 143219713 143220815 CAGTGAACATCTCTGTGGTC 58 143219627 143219645 AAGGAGTAGCCACTGTTCC 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169 2 1 2 85 14 115391892 115391913 CTAGTGAGACTAGGAAGAGGAG 58 115391956 115396013 TTTGATCAGTGTGCTAACTGTG 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000034969 2 1 4 82 4 15742475 15748957 TACAGGTATTTGGCCTTGGT 59 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240 2 2 4 83 4 15742476 15748961 AGATTACAGTTTGGCCTTGG 58 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 2 2 2 80 10 10797361 10797379 CCACTGTCTTCCTTGACCT 59 10797061 10797318 AGCTATGTTCAGAGCTCTCC 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000012943 2 1 2 80 7 143518091 143518110 GTATTTATGGCAGCTCTGGT 58 143518027 143518048 CAGGATCCTGTCTTGTTCG 58 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 3 2 2 80 6 18919635 18930042 TGCAATTGTAGTTACTCCTCC 58 18930084 18930102 TGCTTCTTTACTGCTCTCC 57 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000010991 3 1 3 128 8 68114180 68154064 GGATCTCTTTCATGGAGATTCAG 59 68092091 68092110 TGAAATGTACAAACGGCTCC 59 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 3 2 2 86 17 58292593 58292612 ATACTGTCAACCTTCCTCGC 60 58280156 58292546 ACTGCTGGTACTCAGATTGTC 60 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 3 2 2 80 7 27231492 27231511 GAGTGTTCATCACAGACGAC 59 27231307 27231451 GATCATCGGAATCCACAACAC 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 81 11 81635521 81635539 CGACAAGTACAAAGCGGAG 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000090096 1 1 2 80 8 71663004 71670024 AGAAATCAGACCACATCTTCAG 58 71670064 71670083 CGTCAGGTATGAGGTATTGG 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000087695 3 1 4 102 20 2505243 2505261 AAACTTCAGAAGTGCCTGG 58 2505326 2509631 GCTTCTCTTCCTTGAGTTCC 58 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 1 3 3 80 3 95724044 95724062 CACATCCCTATCAGCAGCA 60 95724105 95724237 TGTAAAGGAGGAGACAGGTG 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 3 2 2 91 7 97899360 97899378 AAGGGATGTCCAAGAAGGC 60 97897456 97899305 CTTTGCTTTCCAGGTCCAC 59 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000081958 1 1 2 81 9 82437535 82437557 CCCGGATAATAAAGAGTTTGCTG 60 82437598 82439124 CCGTTTGTGCTTGTCAGAC 60 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 3 1 2 73 15 2966167 2966187 CGAGAAGTATCTGAGAAGCCA 59 2813614 2813634 TGTACATCATGTTACTGTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000054828 1 1 3 141 1 221893580 221906693 CTAGTACTGGTCCCACAGC 59 221906798 221906816 AGGATAAGGATGCAGAGCG 59 NA Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 1 2 2 80 4 89120760 89128656 CATCAATCCGGAATGAAGGC 60 89128781 89128803 GGCATCAAAGATGAAAGGATAGG 60 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000075569 2 1 2 92 2 195678388 195678406 GAACAGGAGGACCTGACTC 59 195678312 195678332 GTCCTTCTAGGGACTCGAG 58 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 3 2 2 119 7 75578736 75579367 CAAGAAAGGAATTGTGGACC 57 75578636 75578654 AACACAGAGAAGTTGAGGG 57 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000038612 2 1 3 80 7 123140053 123140072 AGATCCTAAGGGATGTGGGT 60 123140114 123140637 TGATGTCTTTCCTGTCCCAC 60 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762 1 1 2 80 1 245905511 245905530 AAGCTGTGGCAAACATTCTG 60 245901176 245905468 GTCAAGGCACCTTGATTCC 59 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762 3 1 2 80 1 245901181 245905473 ATTACGGAATCAAGGTGCC 58 245901119 245901137 TTCATGGCATTTGAAAGCC 57 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000090680 1 1 2 80 3 112714661 112714682 TGGTCTTTATTCTACATGCTGG 58 112713638 112714620 ACCTACTTGCTCCTTGTCC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097 1 1 2 80 8 111840529 111840551 CCACCAGAAATATACAGTGACAC 59 111839431 111840491 TTCTTTATCCTTCCGGCTCTC 60 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 3 2 2 80 2 232155841 232155862 AGAGGCATTATGACTCTATTGC 58 232154422 232155803 TCTCCTCTTGTAAGGCTAACTC 59 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 3 2 2 80 X 124338834 124338853 AAGTGGCATCGTACAATACC 58 124329089 124338791 CTCCGGAATGCTGAAAGTC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000088270 3 1 3 81 4 155561306 155623160 AACAAACAGAACGTGACCC 59 155561243 155561261 CGGTGTTGTAGCCAAACTG 60 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000004672 2 1 2 80 10 12990839 12990947 CTGAAGAAGGGCTGTAAGGA 59 12990699 12990717 CAAGGCGTTGATTTCAGGA 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000078906,ENSRNOT00000070825,ENSRNOT00000071829 1 3 3 80 17 66595403 66595423 TCTTTGAAATGTTGCTGGAGG 59 66595459 66596153 CTTGTAGATGTACCTTCACTATGAG 59 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000015322 3 1 2 81 4 9997026 9997044 CACATTGACGTTCAAGCCA 59 9997089 10002128 GCGGCTCTAAGTAATGCTC 59 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000089042 2 1 2 86 2 189337103 189337123 CCCTTTATGCACATTCTGACC 59 189335009 189337055 GAGGATATCCTGGCCATCC 59 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364 3 1 2 86 2 189337102 189337122 CCTTTATGCACATTCTGACCC 59 189336617 189337055 AATATGGTAGCTGGCCATCC 60 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000082741 2 1 3 80 7 82058595 82058614 GTATGGATTACAGCCAGTGC 59 81992029 82058553 CATAACTAGCTTCAGGCGAG 58 NA Rattus norvegicus 81 AC103056.1 ENSRNOG00000014105 ENSRNOT00000018878 1 1 1 60 1 255801701 255801720 AGATTAAGGCTTGGGACCTG 60 255801849 255801868 TCCAGTCGTTTCAATAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310 2 2 3 84 3 146381295 146381313 GGATTCTAGCAGCAAGTGG 58 146380163 146381247 ATCATACTCCAACAAGCGC 58 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000064483 3 1 2 102 14 92485010 92485029 CTCAGGGACAATATTGCTGG 59 92478991 92484948 TGAGCATTTCTCTTCTGTTGTC 59 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471 3 1 2 80 17 63273007 63273027 CCTTTATCAGCTACCAGTGTC 58 63273066 63278530 TTAGTTGTTGGGACTAACTGTC 58 NA Rattus norvegicus 81 Otof ENSRNOG00000009967 ENSRNOT00000044278 3 1 2 80 6 27373613 27373632 GAGACAGATGGTCTGCTACC 60 27373675 27378384 CTCTTTGCCTTTGCTTCGA 59 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386 1 1 2 80 4 179904689 179904708 TTCTGGGTACCTGTTATGCA 59 179830715 179904646 CCCTGGATACCCAGAAGAC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 3 3 4 80 8 70175531 70175970 TGTGAACGTGTTAGACTCCC 60 70176008 70176031 CTAAGTTCAATGTAGAAGTCCTCG 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000081109,ENSRNOT00000089775 3 2 4 86 12 14502266 14505252 GTTACAAGGTTTACTACTGGGAG 59 14502202 14502220 TCTTTACCACAGGCTCAGG 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000089775 2 1 4 102 12 14621313 14621332 AGAGATCTTGGACACCTCTC 58 14613489 14613508 ATTCCTCCCATACACCTCC 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035 2 1 3 92 10 13321393 13321412 GTAATGACTGGAGTGACGTG 58 13312755 13321341 CAATAATAACCTGTGTCACGTG 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035 3 1 3 93 10 13321395 13321414 TGGTAATGACTGGAGTGACG 60 13312756 13321342 AATAATAACCTGTGTCACGTGC 59 NA Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407 3 1 2 115 4 81249079 81249097 AAAGTTGAAGAGGCAGAGC 58 81249176 81255874 CTTGTCAGCTCTGTGAACC 59 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 2 2 2 80 3 82610411 82611680 GCTGTCATCAAGGTAACCC 58 82610349 82610368 AGTCTGGTCTAGTGAGAGTC 58 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974 3 1 2 80 13 100353033 100405248 GCCTCAGAATCAGTGAACAG 59 100352972 100352991 GCACCCATTTCTTATTGGCA 59 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159 1 1 3 106 20 3147444 3147645 AAGAGCATGGACGACTTCC 60 3147714 3147733 TCTACACCATCAAAGGCGAG 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 1 2 4 100 5 152685886 152685904 AGAGGAGAAACTGACCCAC 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 2 2 2 80 2 235350411 235351813 TATTCATCATCCAGGCCTGTC 60 235351854 235351873 TGTCTGTCTGATGATCCACC 59 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000058422 2 1 2 80 11 81713668 81713686 TTTATTTCTCAGCCCGCGA 60 81712561 81712838 CATATTGCTGTTTCTGGAGTAGG 59 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 1 2 2 80 3 173867264 173868468 TTAACCAGGAAGCTTAACCAG 58 173868509 173868528 CACATAGTCACTGAAACGGA 58 NA Rattus norvegicus 81 Phactr3 ENSRNOG00000057996 ENSRNOT00000083726,ENSRNOT00000081235 3 2 2 80 3 173821100 173821118 GAGCTCAAGGATGACTTGC 59 173821161 173841825 CTTCCTTGGCAATGTTCCAG 60 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000061279 1 1 2 80 7 11003226 11003245 TTCTCAGTCCTGGAAATCTG 57 11002827 11003183 CTCTAGCTTAAGGCTGTGG 57 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 1 2 2 118 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 2 2 2 80 1 220470241 220470896 ATATGGAGTCCACGGTTCC 59 220470938 220470958 TAACCACCACTTGTATCATCG 58 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000077790 1 1 4 80 2 57868683 57876552 CTGGATTTAATCAGGTATGCAC 57 57868624 57868644 CACACCCATATCTTCCATCTC 58 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000011085 2 1 2 84 5 50068704 50072279 ATCTCTGTGCCAATAGAGGAC 59 50068640 50068661 GCAAGCGATATGTTTCAAATCG 59 NA Rattus norvegicus 81 Rfx2 ENSRNOG00000045846 ENSRNOT00000084312,ENSRNOT00000073025 1 2 2 80 9 10274750 10275241 CACCAGCAGTACATAGATGTG 59 10275283 10275301 ACTCTCCTGCAGTAACGTG 60 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 1 2 2 80 1 222862262 222862280 GCCCTATGTACAGTCACTG 57 222862324 222869436 CTCCTGGGATTTCACTTGG 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000065542 1 1 4 80 15 898430 898449 TTTGTGAAGCTTAAGCTCCT 58 898489 907071 TAATATTCTGCTCAGTGAACGG 58 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 2 2 2 81 10 85992283 85992301 AATGTTTGGCGATGCTGTC 60 85989823 85992239 CCACGCAAATCTGATTCTCC 59 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000079217 3 1 2 61 18 54113120 54113142 GAGGAAGACACATGTACTATTGG 59 54118152 54118171 CCCTTGATTCGTTGAGTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000092086 1 1 4 80 1 154447405 154447425 AGCCAACCTTAATATACAGCC 58 154447465 154447617 GTACTTGTATCTGTGCTCCTG 58 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000091681 3 1 3 154 2 196638216 196638310 AAGTAACCAGTTCTCCTAACTG 58 196638423 196641481 ATTCTTTCCTAAGAGCTCCTG 57 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 1 2 3 80 9 50929802 50930817 GAAACAGACCTTGGCAAAGAG 60 50930858 50930877 TTCAGAAGCTTCTCTGTGGT 59 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 1 2 2 80 4 99509049 99509070 CCAATGGTGTTGAAACTTAAGG 58 99508463 99509010 CATCAGATCATCAAACCTGGA 58 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 1 2 2 80 13 102843850 102845016 GAACCATCCTAACATAGTGAAACTG 60 102843794 102843813 CCACTTGCGTATTCCATGAC 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851 3 1 7 81 1 102924364 102926950 TTGTCACAAACCCAGTCGA 60 102926995 102927013 CCACTTCCAATCACACTGC 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 2 1 1 80 9 85542900 85542918 CTTCCAGAAGGAGCTGGAG 60 85544453 85544471 TCCCAGTTTGGCTTCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000040762 3 1 10 81 7 117258795 117258813 GGTCATGTTGTCAGTCTGG 58 117253868 117258750 GGTCTCGTTCATCTTGCTC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000006311 2 1 10 80 7 117254545 117254563 GGTAGCAAGAGAACCAGCT 59 117253869 117254503 GTCTCGTTCATCTTTCTTGCC 60 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 3 2 2 82 3 11790208 11791182 GATGGCCCAGATTTCAAGG 59 11791226 11791246 TCTTCTCATACAGAATGGCAC 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 2 4 4 80 7 142044287 142046420 CGTCAGTATCCCAAGGTCC 60 142044225 142044245 GACTTCCTGCATATCAGAACC 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000089142 3 1 3 80 9 90891940 90893523 AGAAACGATTCCATGTGGC 59 90893567 90893585 CGGTGCAGAAATCGATGAC 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 3 5 5 80 8 73060934 73060953 GACACCACCATTATGTTTGC 58 73058143 73060891 AATGTTCTCCCTGTGATCG 57 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000022557,ENSRNOT00000081669 3 2 2 83 1 164117972 164118465 TGATGTCTGGAGGCATCTG 59 164117907 164117926 TGACAATGGCATTACCACTC 58 NA Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000080600 3 1 2 89 2 251024405 251026060 AAGCTAGAGAAGATGAGAGGC 59 251026111 251026129 GAGTCTCTGTTCGGCTGAG 60 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 3 2 2 82 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277525 171278571 GCTTCAGAACTTGCACCTG 60 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 2 2 2 80 1 102864263 102867293 CATTAGACGAGGGCTATGG 57 102867336 102867355 TGGCAGCATTACTATTCTCC 58 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000087920 1 1 2 90 1 102874794 102874814 GAGTAATTTGGAACGGTTCCA 59 102874866 102876983 GTGAGTCACCAGGTTTGTG 59 NA Rattus norvegicus 81 Tead2 ENSRNOG00000020695 ENSRNOT00000090838,ENSRNOT00000028086 2 2 2 81 1 101217211 101218539 AGCTGAAGGACCAAGTCTC 59 101218584 101218602 GAAGGTGCAGAGATGAGCT 60 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 3 1 1 114 15 27968305 27968323 GCAAGAGTCTGGTGAAGAG 58 27965914 27965932 GTGCACTTGATGACCAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767 2 1 2 80 15 23576466 23576487 CCAGTGTAATACCCTGAATCCT 59 23572678 23576182 GGAAGCACAAGCTTTAGGG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000091346 3 1 3 157 12 11544130 11544150 CATCTCCCGCTACTATGACAG 60 11540848 11543581 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000072868 1 2 3 80 9 10467473 10470828 TTAAGAAGGCCATTGAAGAGG 58 10467413 10467433 TCTTAGGCATCTTCTTGTTGC 59 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 1 2 2 80 4 72016401 72016700 AAATAAGCACAGGCAACGAC 60 72016340 72016360 GAAGTGTTACTTGTGCAACCT 59 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 1 2 2 105 17 76008900 76016082 GTTCTGAGGTCATGATGCTG 59 76016150 76016168 ATATCACAGCTGGCAACCA 59 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440 1 1 3 80 6 122754139 122754158 AGAGGCAATTGTTATCCCGA 59 122754195 122759254 CCATGTCATAGTAATCTTGACTCAG 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699 2 1 3 83 1 3879189 3886252 GTGATCTAGCAAAGATGTCAAGG 60 3872207 3872228 TGCTGAAGGAATTGTCTTTCAC 60 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000050994 1 1 2 85 4 78746839 78750199 TATCAGTGCAAAGGTTGCC 59 78746772 78746790 CACTCTGCAGAGCTTTCTG 59 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 2 3 3 80 11 71350983 71351156 CCCAGTATCTGAAGGTGGAG 59 71350922 71350943 CGAACATCTCTAGCACTTTGTG 60 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768 1 1 3 80 11 71352674 71353345 CCATCTTCACTCACAAGCC 59 71352612 71352630 GGCCAAGTCTCTTGAAGTC 58 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183 2 2 3 85 5 78565302 78565321 CAAATCGCAGTCCAAGATGG 60 78565369 78566345 CCAGGTTTACCTCCTTGCA 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566 2 1 5 89 19 43217285 43217303 GAATTCACTTTCCCTGCCC 59 43224101 43225360 TTAACAACAGCACCATTGGC 60 NA Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000028801 2 1 2 80 2 198704066 198704086 AAGAAGAGGAAGAGGAGAAGG 59 198703053 198704026 TGATGTAATCAGTCTCCTCCT 58 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 3 2 2 60 16 21347813 21347831 CAACCTGCTGGTTATTGCA 59 21347771 21347790 GTAGTATATGGGCTGGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368 2 1 3 80 3 11230400 11230418 GAACAAGGGCTACTCACTG 58 11230460 11231036 TAAGACCTTTCATTCCTGACG 58 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000065649 1 1 3 80 4 38338323 38338345 CAAGGCTGAAGACTTAAGAACTG 60 38338385 38338994 CAGCTGAAGTTCCTGACGA 60 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000088239 1 1 7 80 9 43729282 43729395 TAGTGACCACACCTCTTCG 59 43729438 43729457 GTGATGGTGAGTTTCTTGGC 60 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074378 3 1 3 98 5 159091425 159091443 ACTTAGAAGCCACCGTCTC 59 159084216 159085681 ATGAGCTGGGTCATCTTCG 60 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090 2 1 2 98 4 152960562 152960581 TCAAAGTATGACTGGTCGGG 60 152960639 152965998 TACAACTCCCTTGTCCTTACAC 60 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000043851 1 1 4 80 4 85694883 85703849 GTCCAGCATCTACTTACGG 57 85703892 85703911 AAGGCGAATACTGTGTAGTG 58 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 3 2 2 80 1 52444621 52444640 TCTGAAAGTGTTAGTGCGGA 59 52424719 52444582 CTTAGGAGATGGTTCATCTTCTG 59 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593 3 1 2 80 6 44240078 44240749 CACTGGTTTGTATAGTGTCTACC 59 44240788 44240807 TTCTGCAGTAGAAGATGCAC 58 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 2 2 2 80 2 195744537 195744556 ATGTTATCACAGCCATCAGC 59 195744014 195744495 CTATTACCTGGTTCTCCAGC 58 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218 3 2 3 80 7 70980742 71069220 TTGGGAACAGAGGACTCTG 59 71069262 71069282 GTTTGTTCATCCACTCATTGG 58 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000063853 3 1 10 81 9 95286390 95286410 CCCATCATGCCTAATATGGTC 58 95286449 95298737 CATAGGCTTCAAATTCCTGAGAG 59 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000081127 1 1 2 80 6 126668026 126668046 TCAGCTATGAGATCCAGATCC 59 126665973 126667984 TGTGAGGATTCTGCAGGAG 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000067913 3 1 4 82 7 124230077 124233810 TGAGGATGAAGAGTGGTCTG 59 124230014 124230032 TTAGGGTGACACCATCAGC 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 1 2 2 106 20 45189544 45189562 CTTTGCCCTCTTCAAGGAG 58 45158830 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 2 1 1 97 3 11477620 11477639 GTACCACAGAGATCCATCCC 59 11479523 11479541 GTGGTAGGTGGTCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 1 2 2 80 X 114992186 114992208 CTTTGTACAGGAATACAGATCGG 59 114992244 114998949 CAATGCTTCTTAGCTTCTCTAGG 59 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000080666 1 1 3 107 10 46118789 46118807 CAAATGGGTGTCATGCGAG 60 46118878 46121874 ACATGTAGCCTTGAGGCTC 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 3 2 3 81 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085429 46089140 GAGCATCTCTAACCACCCA 59 NA Rattus norvegicus 81 Rps2 ENSRNOG00000059428 ENSRNOT00000088299 2 1 1 230 5 166870240 166870259 CATGCTTTCTGAAGTCACAG 57 166871460 166871478 GGTAGATCTCCTCCAAGGA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324,ENSRNOT00000042677 1 3 3 100 12 20956240 20966602 CCTTGAAGCTGAACTCCCT 59 20956158 20956181 GTCATAATCTATGTGCAAGCTCTC 60 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000005467 1 1 2 81 13 94832715 94832737 CAAATCTCATGGAGACTCCAC 59 94832652 94832670 TAGACTTTGCTGCTTTGCC 59 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000089966 3 1 5 116 1 15839161 15844911 AGTGTCAGCTTACCCACAG 59 15844988 15845009 TTCTGTTCTGACTTAGAGCAGG 60 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692 3 1 2 167 X 71541178 71543908 ACAGGGTTAGCTGAGTTGG 59 71544038 71544836 AAAGTGAGCAGATCTGTCCA 59 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000082967 1 1 2 192 X 71541181 71543882 GAACCAACGAAACGTATGCT 59 71544037 71544834 AGTGAGCAGATCTGTCCAG 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 2 3 4 83 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470323 28485474 AGTGTACTTCCTTTCCTTCTCC 60 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236 1 1 2 80 7 115038529 115044457 GATCTGCTTTCTCAGATGACC 59 115038469 115038487 GATAGCCCACAGCAATTCC 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 3 2 7 89 2 186122531 186122551 AGCACTTTAATAATGCGCTCC 60 186117949 186119088 ATCTAGAGCCGTGTTCATGG 60 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000077701 3 1 2 81 19 55936768 55936787 ATAGCAGAGGACATCTCTGG 58 55936830 55937689 TGAAGAGGTCCTTGTCATCC 59 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 2 2 2 80 X 110846463 110862326 AAAGTAGGAAGCAGAGGCAG 60 110862369 110862387 CTCCTTGTTTCAAGGTGCG 60 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855 1 1 3 82 8 111768498 111770117 ACTATGGATCCAAAGATGATCCTC 60 111768439 111768457 CTGGTTTAGCTGGAAGCCT 60 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000037168 2 1 2 80 3 113929638 113929658 CAGTACTACGTCAGCTAATGG 58 113929699 113930558 TCCTCAGTCCCATCATTCAG 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705 1 1 2 80 15 107971212 107972625 TTCGGACAGGGATTCTTCG 60 107971150 107971168 AATCTCTGACAGAGGCGTG 60 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 1 2 2 82 17 87933920 87950481 TGGCTGGAAAGAATGTTCTC 58 87932530 87932548 TTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000051371 1 1 4 80 16 6161308 6161326 TCTGAACATGGTCTTCACG 58 6155844 6161264 GTGAAATAGTGCTTGGGCT 58 NA Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000087404 1 1 2 113 10 107470418 107471085 TAGACTGAGGAAGATGGGCT 60 107471161 107471179 TGTTCCTCCTGAACTCGTG 59 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000077461 3 1 2 81 10 47529372 47529390 GTTCAACAAAGGAAGGCTG 57 47528450 47529328 AGCTTGGTATTTCTTGACGA 57 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298 2 1 2 159 10 10828180 10828198 GATTGAAGCAGCACCACTC 59 10828708 10828954 TTACGGAGCATAATGCCCA 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019 1 1 10 80 15 32614112 32801000 CTACTTCTGTGCTGCACAC 59 32801040 32801062 GGTTTAATAGTGAGTCTGGTTCC 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000090355 3 1 2 118 3 119383803 119384553 GTTGCCAGTAGTTATCAGGG 58 119379337 119383722 ATGCAATCAACAGACCTGG 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048137 1 1 5 110 3 2263970 2263992 GTATAGTGTTGATGGAGTGTCTG 59 2264995 2266026 AATACCGAGATGGCTTGCA 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000091945 2 1 6 177 20 3437180 3437577 GCATTCAACAAATCCAAAGGTG 59 3436892 3437046 GTCCTTATAGATCTCCTCCACAG 59 NA InUTR Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000078448,ENSRNOT00000003697 2 2 2 81 10 48027332 48031409 GATGTGCAAAGCTGGTCTG 60 48027269 48027290 CACTGGAATATTGAAGAAGCCC 60 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 1 2 2 80 13 82355956 82356453 TGCTCTCACCTTTGTTCTC 57 82356494 82356515 TCATCATATGTCATGAGCTCAC 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928 2 1 2 60 X 111131157 111131177 TGAGTTCAACTCATACAGCCT 59 111136317 111136336 GACTGAGAGTTACGGTTCCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000010243 3 1 2 82 8 2662685 2678115 TCTGCATCAGAATCCAGGG 59 2678159 2678179 AGCATTAGATGTGATGCATGG 59 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932 2 1 2 80 13 82757495 82757515 AGCTGGAAGAAATTCATCTGG 58 82753354 82757458 CAGAAGGATCTTAAACCAACTACC 59 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725 3 1 2 81 4 100423162 100424701 TTGTCCTCAAAGATTTGGAAGC 60 100423102 100423121 AACTGGGCTAGGTAGTTGTC 59 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495 3 2 3 80 4 158242389 158242407 CAGAGGGACAATTCTAGCC 57 158242448 158244181 GTAGTTATTGATGACAGAACGG 57 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548 3 1 2 80 7 120184176 120185328 CCTCTTCTGTGGATTGGGA 59 120185372 120185390 TCCTTGGGATCATCATGGT 58 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000063875 1 1 2 82 20 30840342 30840360 CTTTCATTGGTCTCGCTGC 60 30839344 30840298 ATTGTAGGATAGGAGGTAGCG 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000078577 1 1 2 92 10 11874600 11877428 CCTCCGCAATTTCACAGAG 59 11874526 11874544 GAGACAAGCCCAAAGTTGG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253 1 2 4 80 1 200671087 200672160 ATGGTGAATGTCACAGATGC 59 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110 2 1 2 80 1 171929217 171932133 GGTCACCTGAGTTACTGCA 59 171932176 171932195 ACTCATACTGGTTCCGTTCG 60 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 1 3 3 80 1 273945315 273945335 GGACCACATCATAATCATCCC 58 273945373 273946208 CCTATTATGTTGACCTTCACCAG 59 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779 2 1 2 80 9 93677322 93677340 TGTTGCTCGTAATAGAGCC 57 93677383 93873183 GGTTTAACTCCCTTCCACTG 58 NA Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000084590 3 1 2 80 9 93815920 93815939 TGTTGCTCGTAATAGAGCCT 59 93829736 93845273 GTTATCCTTGGCTTCCAAGTC 59 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 3 2 2 80 3 8974203 8974224 CAGTGGTGAACTTCTTAAAGTC 57 8973957 8974162 CATCCAGCTCGAAGAACTG 58 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418 3 1 2 104 12 17506437 17506456 GAAGAAGCACCTTGAGACAC 59 17503986 17506370 AAGAGGTCACCTGTGTAGG 58 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 1 2 3 81 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179843 143179862 CATGAGAACAAGCCTGAAGC 60 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000047394 1 1 2 84 20 30791692 30794133 CAAGGTACAGAAGAGGAGGAC 60 30794181 30794199 GAGTGAGATCTGTGGGCTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 3 7 12 96 20 3352061 3352081 TGTACTAAAGGACACCTCAGC 60 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000080241 1 1 3 80 2 62179356 62179377 TGTATTCTGTACTCTGCAACTC 58 62179417 62182352 ACACATCACAGAGTCTACAC 57 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228 2 1 2 139 10 47724291 47724554 AGATCTCGGAGAGCAAACG 60 47723428 47723446 TTCCAGACAGATGGAGCAG 59 NA Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000005687 1 1 2 81 10 109179990 109180008 TACAGTGTGGCAGTTCCTG 60 109181270 109187065 CATTGGCAAAGGGATTCCTG 60 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000082412 3 1 2 80 1 264723510 264723530 ACCTGACCTACATTCTTCTCC 59 264723572 264724741 CGAAGTGTTTCCGTTGTCC 60 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537 1 1 2 80 10 86687976 86690582 CAACACAGGTGGTGTTATCAC 60 86687916 86687936 TCACTATAGAGGGACTCTGGG 60 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000005213 2 1 3 87 13 85392392 85392609 CTGCTTGCCAAAGTTGGAG 60 85377171 85377190 TATATGCTGCACGATGAGGT 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000080114 2 2 3 104 14 22122627 22124645 TGAGGAAGGGCATTTCAGG 60 22124711 22124731 ACTTGAGTGTTGACTCTTCCA 59 NA Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 1 2 2 80 1 260896734 260896753 AGCTGAACGGTATCAAATCC 58 260896274 260896693 GGTTGTTACTCAGGTCTATCC 58 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950 1 1 2 80 4 120295691 120295709 GATGACTGGGACCATCCTC 59 120219423 120295650 TAGTCATCCATTACCTTGAGGG 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000017323 3 1 2 94 4 120232837 120232857 GAGGACAAGAACTACACAGAG 58 120219423 120232781 TAGTCATCCATTACCCGCT 58 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 2 3 3 80 10 109714267 109714512 GAGAATGTCCAGTGCTGGA 59 109714555 109714574 CAGTATGGCCAGGAGTACAG 60 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000083601 1 2 3 157 10 109713438 109713551 GAGATCGAGGTCCAGAAGG 59 109713761 109713779 TTCCCGTGGATGTAGTTCC 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 2 3 3 80 2 208577931 208580556 GCTTCTGATTCAGGTGCTG 59 208580598 208580618 CTCATACTTGCAGAACTTGCT 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956 3 1 2 113 10 109972686 109972705 TGTGACCAATGTGGAAATCC 59 109972377 109972482 AAAGCAATCATGACCTGGG 58 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 2 2 2 80 2 188562603 188564538 AAATCTTCCCTGAGATTCTCCT 59 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097 2 1 2 100 15 57133806 57133827 ATTTGGAGATCAGAGAAAGCAG 59 57133408 57133745 CAAGCTGCTAGCCTTTCTC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494 2 2 3 99 19 9774386 9780740 GGACTGGAAGGAACATGAC 58 9774305 9774323 GTGGTAGGTAAGGATGGCT 59 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401 1 1 2 81 11 89557313 89570161 GTCCACAGGAGTTAAAGTTCC 59 89570204 89570222 CGTACCATCACCTACTCCT 58 NA Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 1 2 2 83 1 198089474 198089492 TTGTGTCTGCTGACTCTCG 60 198089539 198091662 TTCTCGATCGCTCTTCCTG 59 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 3 2 2 89 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789126 GAGTACAATTTGTGGCCAGC 60 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008003 1 1 2 81 4 161690878 161690896 TTAAGCACATTGCCAAGCC 59 161691677 161692276 TTGTGACGAATAGAGTTCTGTG 59 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000037974 3 1 3 80 9 73418546 73418566 AGAAACAGTTAATCTGCCACC 59 73418607 73437252 CCACTTGTTGCTTCTTCCAG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798 2 1 2 80 7 67017913 67017933 AACAGAAATTCCAAGCGAAGG 60 66982507 67017871 GATGCCCTCAGACTCAGAG 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000073528 3 1 2 81 1 1772310 1774172 GACTTACAGACCCTGTCCG 60 1774217 1774235 CACTGCTATAGGAAGGGCT 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000088089 3 1 3 158 6 126109514 126109535 TCCTATGTATCATTGGAGTGTG 58 126113999 126116796 GCATCTTCATATTGTACCACAC 58 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 1 2 2 80 1 78518363 78518384 CCTTATGAAACAGATGAGGACC 59 78505955 78518323 TTTGGGCTTTGGTTTCTTGG 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802 3 1 2 80 3 116950547 116950565 TGCTGGAGGATATGAGCAG 59 116950606 116950989 GTTGAAGTAGGCAAACTTTCGT 60 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844 1 1 2 109 14 33150506 33164070 GCAGGAAGCTACAGTTATGG 59 33150416 33150436 CATACATGTCGTTGGGTAAGG 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 3 2 2 80 10 13736555 13736683 TACTCTGAAGAAACGGAAGGTC 60 13736724 13736742 AGCCAAATCAGGATCCCAG 60 NA Rattus norvegicus 81 Nfasc ENSRNOG00000030515 ENSRNOT00000051512,ENSRNOT00000044972 3 2 3 87 13 49407445 49413717 ATTCCGATGGATCTGACCC 59 49407376 49407396 CAATCAGGATGTTATCTCGGG 58 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000078956 2 1 2 80 4 100765965 100767016 ATGGATCCTATAGCTGCAGAG 59 100765905 100765924 GCCTGAAGAGTTAAGCTGTC 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021229 3 2 5 80 1 259406627 259406648 TTATCACTAATGAGCGCTTTGG 59 259402829 259406587 CAGGTCTCATCTCTAACCCA 58 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000074245 2 1 2 88 7 118715092 118715113 GCTGAGATCTTTGAAGATTCTG 57 118715161 118717564 GCATCTTCCTCTTTCCTCTC 58 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911 1 1 2 91 7 118715145 118715163 CCCTCAGGACAAGAAAGAG 57 118716608 118717563 CATCTTCCTCTTTCGTGGG 58 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 3 2 2 80 1 64122929 64122950 CAAACTTGTGCTCTTTGATCTG 59 64122991 64124661 AGGCCACAGAGTATCTTCC 59 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324 3 1 2 89 6 127650075 127650093 GACCGGGTCAATGAATTCC 59 127649638 127650023 CAAATCCAACAGACTCCACG 59 NA Rattus norvegicus 81 LOC100909893 ENSRNOG00000021060 ENSRNOT00000075068 1 1 1 88 1 89409704 89409722 CCTTCGCAACCATCTACAG 58 89416278 89416296 GTTGATCTCCTGGCCAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000081992 3 1 2 80 9 98633994 98634014 TTCTGTAGGAGCATCCAAGTC 60 98634055 98636442 GAGTCCCTTCTTCCTTCCAG 60 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 1 2 2 80 20 32067887 32067906 GGCTGTGATCGATGAAATCC 59 32066334 32067844 GCACAGAGTCCTAGCAGAG 60 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 1 2 2 80 1 74978364 74978383 TTATGGGACCGAATTTGTGG 58 74978423 74985457 AGGAAATCTGAAGGAAATGAGG 58 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 1 2 2 80 8 72221760 72221778 TCCAAGTCAGTTCAGAAGC 57 72210882 72221716 AAGCTGCGAAGACAATCTC 58 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 3 1 1 60 X 124228612 124228631 TTCGAAGAAACTCAGTACCC 57 124232883 124232901 CATTCATGAGCTCTGCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 1 2 2 80 3 120729883 120729902 TGACAAGTCAACACAAACCC 59 120729945 120749195 GACTGCCTTATGGAAGCCA 60 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 3 2 2 80 3 120729876 120729896 TGAGTTGTGACAAGTCAACAC 59 120729937 120749188 TTATGGAAGCCATTGCACTG 59 NA Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 1 2 2 80 4 88712897 88712918 CAAGGAGTATTGGAGATTTGGA 58 88712958 88713826 CGTGGTAGAGCTTAATCCTG 58 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 1 2 2 80 7 11501687 11501705 AGTGAGGTGTACTCCATGG 58 11501486 11501644 GTAATCCATGCCAACCTTGG 59 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000088697 3 1 2 107 10 94475389 94475407 CTACCATTCAGGCCATGGA 59 94475475 94475886 TTCTAAAGGTGTAGACATGCAC 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 3 2 3 87 11 82753128 82753146 TCAATGGCTGTCAGTCTGG 60 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000002020 2 1 3 92 12 25447473 25452063 CATTCAAGGAAGCCATCACTC 59 25453985 25454006 GTTTCTGAAGGGACATGTTGAG 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 1 3 4 84 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 1 3 3 80 18 73272160 73272181 CATTCTTTCTGGAAGCATTGAG 58 73272220 73274062 CATCATCCCTGCAATCATCTC 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 2 2 2 60 2 86474338 86474359 GGAGAATTACAGCAACCTTCTG 59 86471479 86471500 CCCACATTCTTTACATTTGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Nanog ENSRNOG00000008368 ENSRNOT00000077245 1 1 2 80 4 155534952 155534973 CTCACCAAGACAGAAGATGC 59 155535015 155535034 TACCTTTGCCTCTGAAACCT 59 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 3 3 3 80 15 4040901 4041093 AGCTGTATCAATGATGTGCC 59 4040840 4040858 AGGACGGTCATAAGCATCC 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000064557 2 1 2 83 3 8962280 8963395 CTATAGCAGGCCCATCTCC 59 8963438 8963460 GTTACTGTGTACTCAAACCAGAG 59 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 2 3 3 80 4 156063842 156063862 GAACGAGAGTGAGAAGAACTG 59 156063902 156064911 GTGATGAAGTCCTGTTCTTCC 59 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000002507 1 1 2 80 11 80800660 80800678 GAACCATGGTCATCGTCAG 58 80800719 80802640 TTGGGATTTCAATCTCCATCAG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000037100 1 1 3 112 13 52282367 52282386 CAGATAGCATCTCCAGCCTC 60 52278946 52282292 ACTTCGAAGTTGGGCTACC 60 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000038748 2 1 2 87 3 122001154 122057407 GTTACCTGTTGGGAAGCCT 60 122001085 122001104 AGCAGTACAGAGAAACTGCA 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253 3 1 3 167 15 35001891 35002420 TGAGGAGATTGTTGGTGGT 59 35002549 35003086 GTGACTGTGATTTCTCTTCCA 58 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000077808 3 1 4 144 5 127613019 127614088 CATCACTATCAGGGATCGCT 59 127614965 127614983 CACTGGCTTGGTTTCACAG 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 1 2 2 97 8 117065069 117065517 GTTCAAGCACCAGATGCTG 60 117065578 117065596 CCTCCACGGAGAAAGACAG 60 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939 2 1 2 89 4 10687782 10687800 GGAAGAAATCCTCCAGCCA 59 10687853 10687873 ACACAGTGTAAGGTTGGGA 59 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122 2 1 2 80 7 12164272 12164290 CGAGGAGGTCACATCAGTG 60 12164334 12167376 TCTGTACTGCTGGTACGTG 59 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000085709 2 1 2 81 5 58309000 58309291 TTTGGTCGCTATGTTTCCG 59 58308547 58308567 GCTTCCTCCTTAGATGTTCTC 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 1 3 3 80 12 30069029 30069050 GATATGATCCATACGCCAATCC 59 30051549 30068989 CTTTATGGACCCTCCTGGTG 60 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 2 3 3 80 12 30069029 30069048 TATGATCCATACGCCAATCC 57 30051547 30068986 TCCTTTATGGACCCTCCTG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000043079 2 1 4 80 7 78462383 78482265 TCGAAGAAATATCGCTCAGGA 59 78482306 78482325 ACTTACATCACTGTCCGAGG 59 NA Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 3 2 2 80 12 25060980 25062073 TTCCTCAAGGAGGTGAAGG 59 25062117 25062135 CTTGTCCTTGTACAGCACG 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916 1 1 2 82 15 34342141 34352412 GCTAATTAAAGTGAAGACGCTG 58 34341771 34341789 GCTCCTTGATTCGTTCCAC 59 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552 1 1 2 80 4 163225196 163225214 CATTGCGGTAGCTTTAGGA 58 163224129 163225152 AATCTCCGAAATGCTAGGG 57 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552 3 1 2 80 4 163225197 163225215 CCATTGCGGTAGCTTTAGG 59 163224130 163225153 ATCTCCGAAATGCTAGGGC 60 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013937 3 1 2 98 4 28647767 28647790 GTTCCTCACTTATATCCTGAACTC 59 28637800 28647712 TTGCAACTTATAGGATCCCGT 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004236 2 1 6 80 10 53735718 53735737 TCAGGCTTCAAGATTTGGTG 59 53735780 53737894 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000004236,ENSRNOT00000085582,ENSRNOT00000004295 3 4 6 80 10 53724224 53725606 CTTCAAGCAGAGATACAAGGT 58 53725648 53725666 TTCTCAGAAGCCTTCTTGC 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599 2 1 6 80 10 53846101 53846667 GAACTTACCTACCAGACCGAG 60 53846706 53846727 CACCTTCGCCTGTAATTTATCC 60 NA Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000027789 3 1 2 91 15 34501008 34501026 GAGCAGGAGAAATCCAGGG 60 34501079 34501856 ATGATCTCACTCACTTCCTCC 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000072073 2 1 2 81 1 261177911 261177931 TCCCGTGGTATCAGTAATGAG 59 261171649 261177871 AATTTCTACCTTACAGGTGACG 58 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000056221 2 1 2 96 7 119826156 119829233 CTACTGGAGGACATCCAGC 59 119829292 119830479 ATACTGGATGCCCTTAGCAG 59 NA Rattus norvegicus 81 Wdr45b ENSRNOG00000036662 ENSRNOT00000054918,ENSRNOT00000088474 2 2 2 80 10 110533802 110535464 CCCTAAAGGCCTCTGTGTC 60 110533740 110533758 TGTACATGGCCAGTGTGAG 60 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 3 2 2 92 10 35713752 35714015 CATTAAAGAGAAGAAGGAGTGCC 60 35713682 35713701 CCATCACAAATCACGTTGGG 60 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 1 2 2 81 1 198458188 198458208 TCAGCTTATATTTCGGACCAC 58 198456845 198458145 CACCAGTACCTTTGTTGCA 58 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930 3 1 2 82 7 106739114 106742870 TTCTTCAGGAAAGAACAACTGG 59 106728765 106728783 CCACGAGGATTAGAAAGGC 58 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000085285 3 1 5 81 8 6140685 6152369 GTTATTTCGGCAGACCGTC 59 6140324 6140342 TTCTGAGTCCCTCCATCCT 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000087961 3 1 2 92 1 216728549 216728567 CAAGCAAGTGCCCAATGAG 60 216725495 216726170 GTGAATTCGGAATCTTCATCCAG 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 2 4 4 80 9 104698717 104700324 TCGGTCTTAATTCATGGTGCT 60 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 3 4 4 81 9 104698717 104700323 CGGTCTTAATTCATGGTGCT 58 104698655 104698678 CTCTTTGACAGAGTAAGTAGACTG 59 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 3 2 2 80 8 116273328 116273348 GTCGTAGTATGATTGACGGAG 58 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544 1 1 3 80 13 71911370 71915147 CAATCGCTGGTGGTAACAG 59 71911308 71911326 CCAGGAGGAATTTGAACGC 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000015426 1 1 2 98 4 9197713 9197731 AGCCATTTCCATTGGACAG 58 9197792 9215583 CTAGGGAGGTAATCTGGGAG 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678 3 1 2 80 5 173620597 173620615 TTGATGCTTAACTCCAGCC 58 173610410 173620554 TCCAGGTTTGTCTTCTACAC 57 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000082627 1 1 2 80 2 104785122 104785140 TACTCCACTGCCATGTGAC 59 104785183 104799770 GAGACGATGCTTGATTTGGT 59 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000002010 3 2 3 80 12 25350156 25363307 ATCCCAAAGCCTGATGAGG 60 25363350 25363369 ATTGAAGAGCTCCTTCACCT 59 NA Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000087656 2 1 3 80 12 25364078 25364098 CGGATGGTTATCATCAACCAG 59 25364814 25365912 GTTAGAGTCGTCCTCATCTGG 60 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000089441 2 1 2 81 5 128723583 128730211 TTGCTAAAGACCAGAGTAATGC 59 128718826 128718847 GGCTGGTATATTGCATCTACAG 59 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 3 1 1 71 1 81844062 81844080 TTCCCTTTCTTCTGGCTGG 60 81843925 81843944 TATAAGTACCAGGGTGGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 2 2 2 87 8 49299518 49299536 CGAGGAACTGGTACTGGTG 60 49298213 49298960 TTCGGATGGGCTCATAGTC 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 3 3 3 81 14 763273 763293 CATCAGAAACAAACAGCAGAC 58 762048 763233 CCATATGTACTGTCTCATTGGA 58 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 1 1 1 60 7 114944353 114944372 ATGGATATGGTCAGCATGCA 60 114944311 114944329 GTGCTGAGGATGTGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000056058 1 1 2 80 4 157148803 157149697 GCTACATCTTGGAAATTTGCTG 59 157148744 157148762 AATAGTTAGCGGTCCAGGG 59 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425,ENSRNOT00000087105 1 2 2 80 11 82647411 82647431 CATTAAAGACCAAAGGCTGGA 59 82646670 82647373 CAACTCTATACTGTTTGGGAACC 59 NA Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632 1 1 2 81 16 48732620 48732639 TGAACACTTAACCCACAGGT 59 48634956 48732576 CATGGTACCCTGAAGGTGG 60 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 1 4 4 104 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831507 215831525 CAGTATGTCTCCAGGAGGG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 1 3 5 80 8 39404674 39404692 GAACTTTGTCCACCAGCAG 59 39392764 39404631 GCCTTCACCATCAGATTGTC 59 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000084882 1 1 2 137 1 80339419 80339570 GAAGGGTTACCCTCGATCC 59 80336779 80338367 AGATGGCAACTTGTGACCT 59 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000049221 2 1 2 81 7 11685443 11685461 GATCCAGACATTTCTGCGG 59 11684996 11685400 AGTTTGGTGTGGTTGAAACAG 60 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000076955,ENSRNOT00000049974 2 2 2 80 11 70096538 70103143 CAATGCGTACAGTAGCATCC 59 70096477 70096498 GCAGTGAAGAAGAGATTAAGGT 58 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 2 2 2 80 18 16541462 16541480 ATTCTGTGAGTGAGCCCAG 59 16539870 16541419 TTGTTGCATTGAAGCACTCC 60 NA Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 1 2 2 80 7 122955907 122957473 CCAGCTCTGATCTCACTAGG 59 122955846 122955864 AAATGCGTTGTCACTGAGG 59 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 2 2 2 83 5 129163927 129163946 TGCAAACCAAAGCTTAAAGC 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497 1 1 3 80 11 11213809 11516566 CTGGAAGTAGCATTATTGCGAG 60 11213750 11213768 CAAGATTGCAGGCTCTCCT 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036283 3 1 8 81 1 226468243 226475589 CTCAACTTGTCCAAGGAAGG 59 226475631 226475651 GGATATTGGCAAAGTCATCCT 58 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 2 2 2 81 1 105311388 105314761 ATAACAACTGCTACAGGGAC 57 105314805 105314823 GAGAAGATGACGAACCCAG 58 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 2 2 2 80 2 199836145 199837433 CCCTCTGATTAAGAGTCATAATGAC 59 199837469 199837489 TCCACAAAGAACTTGTACTGG 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000044638 2 1 7 89 3 48198912 48198930 TTTCTCCTCAGTCTGCTCC 59 48198980 48204883 GAAGATCAACCTTGCTGAAGTC 60 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278 3 1 3 81 5 121953215 122019313 GTGGATATGCTTTGATGTGG 57 122019357 122019375 CAGTCCTGAAGAAGAGCTG 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 2 2 2 102 7 12621670 12623747 GTAGAGAAGTCTGGTGCCT 58 12623813 12623831 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 2 2 5 83 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114410 55114429 TATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000085336 2 1 3 80 1 199609420 199609441 GAAGGTTGTCATCTTTACCCAG 59 199609482 199609662 AAGTAGGAGCCGATCTGTG 59 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 1 2 3 150 10 70566473 70566491 AAATCTTGACCTGGGTCCC 59 70579746 70580554 GAAGGACTGTCCTACTGCC 60 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 2 4 4 80 20 4586977 4586995 CATGCTGTCAACTACCACG 59 4587039 4587153 CAGGAACAACAGAACGCAG 60 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 1 2 4 91 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583962 4584130 CATTCACTCCTCTGGGCTC 60 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531 1 1 2 80 1 48026713 48026846 CGACCAGTATGGGATCTCG 60 48026651 48026672 CTGCCAGTGTATTAGGAATCAC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079108 2 3 5 81 3 8582484 8584234 CAACATCCAGAGCAAGCAC 60 8584278 8584297 AATAACTCCACGGATTCGGT 59 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 2 1 2 80 9 15626011 15626030 AAGATCTACGACAAGGACCG 59 15624547 15625973 GTTAATTGTTCTACTGACCTCCAC 60 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000064255 2 1 2 80 16 8760624 8772194 AAAGCTCTTTAAGTTCGAGGG 58 8772234 8772254 AATTCTTTCACCCACTGATGC 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 2 2 2 80 10 88513968 88513986 GCAGCATGTCGTAGTTTCC 59 88510975 88513926 ATTGGCATTCTTGAACTCCTG 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521 2 1 2 137 10 88517716 88533102 AAGAAGCAAAGAGGGAAGC 58 88514465 88514484 GATTACCGTAATAGCTGGCA 58 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000021152 2 1 2 115 9 79523411 79544937 CTGGTCAGTGGTAACAATCC 58 79523315 79523333 CTGTCATCATCTGCCTCTG 58 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940 2 1 3 80 4 27585342 27592365 CATCACCTGAGTATCGGAGG 60 27592408 27592426 GGTCCGTAGGGTTACTGAG 59 NA Rattus norvegicus 81 Ezr ENSRNOG00000018524 ENSRNOT00000046746,ENSRNOT00000090033 2 2 2 84 1 47296042 47296063 GGAGTGAAATCAGGAACATCTC 59 47292111 47295998 TAGAACACGAAGTCAGGAGC 60 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000076225 1 1 3 80 1 48051108 48051127 AAGCAGAACATCCATAGCCT 59 48051170 48052272 GAAACGCAGTTCCTTCCAG 59 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000050620 2 1 2 80 7 130036183 130037255 GTCATCTCCACTGATCCCT 58 130037299 130037317 AGGTAGATCACACCCTGTG 58 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 1 1 2 60 18 17556867 17556885 CCTGGAAGTGACTCTGGAC 59 17606024 17606042 GTAGAGCAAGCCTCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000074951 2 1 3 97 4 61818982 61819000 GGTGAAGAAAGCCTTCCAG 59 61819059 61820246 CATTTCCAGACTGAAATCCCT 58 NA Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 1 2 2 81 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567343 49567361 TAGTCGTTGTTGACATGCC 58 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821 1 1 2 124 10 109966945 109967713 AGGTGTTTAACTTGCAGGG 58 109967801 109968418 ATACTGCTCCAGATCCAGG 58 NA Rattus norvegicus 81 Slc7a14 ENSRNOG00000028097 ENSRNOT00000036717,ENSRNOT00000085452 3 2 2 81 2 115774712 115774734 TCTATCTCATGCTAAAGCTCTCC 60 115774772 115788189 CCAAAGTAAATGAGCATACCCA 59 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000077898 1 1 2 98 2 203386766 203386784 CTGAGTGGCAGCAATATGG 59 203385167 203386704 TGGAATATCCTGAGCGCAG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134206577 134206596 ACCCTGACTATGTGAAGGTG 59 134205120 134205588 AACCATAACCAATCCAGGGAG 60 NA Rattus norvegicus 81 Cpa5 ENSRNOG00000010467 ENSRNOT00000085798,ENSRNOT00000013948 2 2 2 80 4 57940576 57940594 CAAGTCAATTCAACCCGGC 60 57940638 57943610 GAACCATTTCCTCCGAAGC 59 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294 2 1 2 84 7 117149828 117149846 CATCATCCACGGAAACCTG 59 117149545 117149780 ATCGTCAGGAAGTGCAGAG 60 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898 1 2 3 114 18 25199539 25206121 AATTGCCAAGGCAGAAGAG 58 25206343 25206361 GACATAGAAACCCACACGG 58 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724 3 1 2 89 8 13248026 13251717 TTCTGTCTATGAGCTTGGC 57 13247955 13247973 AAATCGACGAAGTCCTGTC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 1 2 18 80 1 43637347 43637369 CCCAGATCTTTACAGGATATCCT 59 43637409 43697833 CACAGGGTCTAGGTCTGTC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000090697 3 1 18 85 1 43454879 43474988 CTGGTCCAATGCTATACGC 59 43475037 43475055 GACTCAACTGCCCATATGC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000045144 1 1 18 101 1 43454884 43475251 CCAATGCTTGCATGGAGAC 60 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA InUTR Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 2 2 2 80 1 19089928 19089951 AAGGACTCCTTACAATATCCTCAG 60 19089987 19092969 ACTGTGTAAACATTCTCCAGTG 59 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 3 2 2 95 9 82597733 82597752 CACTCATGGACCAATCAGTG 59 82597810 82598553 GATTCCTCAGCCAGGAGAC 60 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 1 2 2 80 5 165355346 165355364 AATGCAGCCAACAAGATCC 59 165355407 165355564 CTCTTCACTCACCATCATGG 58 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 1 2 2 80 5 165355096 165355114 AATGCAGCCAACAAGATCC 59 165355157 165355564 CTCTTCACTCACCATCATGG 58 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000018763 1 1 3 110 1 233125889 233125909 CAACATGATCTCCTTGAAGGG 59 233124158 233125052 AAAGACCTCAGGAAGGCAG 59 NA Rattus norvegicus 81 Tdrd1 ENSRNOG00000017064 ENSRNOT00000084861,ENSRNOT00000023024 3 2 2 80 1 277658580 277658598 AATATGGTGCCTGAAGACG 58 277658642 277659093 GTTCCAGGTCTGATCAACC 58 NA Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 3 2 2 80 13 68836905 68836923 CACCATGACCACAAAGGAG 59 68836210 68836863 CATTCTTTGTTGCCACTTCTG 58 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767 1 1 2 80 9 112436731 112447390 ACAATACAGTCAAAGGTGGG 58 112447433 112447451 CAACTGGCAATCAAACACC 58 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157 1 1 2 80 1 85118921 85118939 GCTCGCAAGTACTTTGAGC 60 85118983 85119275 GCCCTGGTAATCCTTCCTG 60 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000017349 2 1 2 85 17 9611504 9613040 CAGTGGCGATTTCCTTGTC 59 9613088 9613107 GGATGATGAAGAGGACGAGG 60 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 3 1 1 60 14 43834069 43834087 TCATTCCTGCGGTATCCAC 60 43837013 43837034 GTGTACACAGGAGTTATTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 1 2 2 80 5 135660912 135661126 CGCTTTCCGGAAATGTGAG 60 135660850 135660868 TAGCTGCAGAATTCCAGGG 60 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 2 2 2 80 5 135661784 135661918 CAGCAACCAGATAAGGGTG 58 135661722 135661743 TATAACATACTCCTCCATGCAC 58 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000007572 3 1 2 81 4 21541924 21559902 ACCTATTCTCAGTCCTCTGC 59 21559946 21559964 GAGATGAGGTGGTGGAGTC 59 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 1 2 2 80 X 15157991 15158012 CAACTGATAAGAAACGCTCAGG 60 15158053 15158910 GGCTGACGTGTTTGAATCC 60 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216 2 1 4 80 5 58554270 58557716 TTCATGTTTGAGATCAGCCG 59 58557757 58557777 CACCATTGTGTCCCATATCAG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000006144 2 1 2 82 6 144118111 144123590 CCTGGGAAGAGAAGAACCA 59 144117050 144117068 GGACTACCTGATTGTGCAG 58 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255 3 1 2 80 8 22940200 22941924 CACAGCATAGTCAAGAAATCC 57 22942333 22942351 CTGAGAGTCAGGAATCAGC 57 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017568 3 1 3 90 16 49562101 49562120 AGAAACTCGCTTATGGTCCC 60 49554067 49562049 TTTGAATTCCTGCGGTTCAG 59 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 3 2 2 80 3 123783604 123783623 GGCTTCCAAGATAAACCAGG 59 123783664 123785606 TTCCTCCGAATTCTCTACTGG 59 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945 3 1 2 80 3 1801826 1801846 ACGTCTTTGACTTTGTCACTG 59 1790827 1801787 TGATGAAGTTGTTCTTTACCGC 60 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675 3 1 2 81 10 17236637 17246709 CTTTGACCTCCAGATGCAG 58 17246753 17246772 AAATGGGATGATCCTCTGCT 59 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000025548 1 1 2 80 19 57455886 57471139 CCATGCTCCAGATTCTGTC 58 57455824 57455842 AGGGCTGAAGTTGAATAGC 58 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 1 2 2 80 X 14965038 14965151 GGATATCTTTGGGTTTATTGGCTC 60 14964981 14965000 ACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883 3 1 2 117 6 71180526 71198949 TATTTGAGTTCCCTGAATGTGG 59 71180430 71180448 TCCTGAATGTCACTTGCGA 59 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000078799 2 1 2 80 4 11161058 11161080 GAGAGCCATTTATGAAAGTAGGC 60 11146266 11152028 TAATCTGGACTGTTGCCAGAG 60 NA Rattus norvegicus 81 Vom2r18 ENSRNOG00000049092 ENSRNOT00000044015 3 1 2 89 8 4333343 4333361 TCTGGAAGAATGGAATGCC 58 4333411 4375131 CACACTGATCCATATTTGTCTC 57 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 2 2 2 80 11 10021252 10022877 AAATCCAGATATGAGATCCGAG 57 10022916 10022936 ACAAGTGTATGATCCCATGTC 58 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 2 1 1 60 8 76479840 76479861 CTGGGAAATAGCAGAATTTGTG 58 76479800 76479819 CTTCACATCTTGCTGAAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491 2 1 2 80 9 97218477 97225640 TCATAACTGGGACCATCGA 58 97218415 97218433 AGAGTTTGACCTTCAGAGC 57 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 2 6 6 80 7 132140133 132140896 CAGAACCAGAGATGATGCAG 59 132140072 132140090 AGCTCTGCACATTCATCTG 58 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000056493 3 1 2 130 4 145453516 145453534 AGCTGCAAATGGAACAGAG 59 145453402 145453425 GGTGCTTTCTATTTAACCCTGG 59 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000071916 2 1 2 80 1 79982695 79982716 CAAATGTAAGATGCAAAGCCAC 59 79982755 79982780 GTGGTCGTTGTATGTATGTGG 59 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 2 1 1 75 8 18431103 18431121 ATTGATGGCAGTCTTCCAG 58 18433990 18434008 TCCTCTGTGAAGTCTTGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289 2 1 2 83 5 153262558 153263950 CCAAAGACGGAGCATTCAG 59 153263996 153264015 TATGTTTCTCTGTGCAGCAG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 3 2 3 80 16 10889646 10895048 GTGAGAAAGACTACATCAACCT 58 10889587 10889606 CGATAAACTTGTCACCAGCT 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 3 2 3 80 16 10889646 10895048 GTGAGAAAGACTACATCAACCT 58 10889587 10889606 CGATAAACTTGTCACCAGCT 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824 3 1 3 80 6 76568435 76570339 GATGGATAGATACTCTCATTGTTGC 60 76568379 76568400 GTAAGTCATCCCAAAGTTCTCG 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000089723 3 1 4 81 1 128217311 128226058 AATCTAGAGCTGAATGCCCA 59 128217249 128217267 GAGTTGTCACAGACACCAC 58 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907,ENSRNOT00000017633 2 2 2 81 4 148401775 148402037 AGAAAGGCCTCAGGTTTCC 60 148401712 148401730 AGGCTGTGAAGATCACCAC 60 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071 1 1 2 97 9 10997101 10997394 GGAACCAGGTGAGAAAGGA 59 10997615 10997636 GATTTCATCTTTGGTCTCAGGT 59 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 1 2 2 80 14 71877481 71884738 GGTCTCAGGGTTCTGACTC 59 71884781 71884800 ACCAGTTACAGTCAGACAGC 60 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 1 2 2 80 11 17119499 17119518 AACTGGGAACAGACAAAGAC 58 17080150 17119459 GATTAGACTTTGGTACTCCCTC 58 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 2 2 3 88 4 58839568 58892954 CCCAGGATAATGGAAATAAGACTG 59 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000084413 3 1 3 89 8 111064464 111066160 GTATCTTCGTGCTCGATGC 59 111064393 111064413 TAGAATGTGGTGAGACCTCAG 59 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000086093 2 1 2 90 8 87211820 87211845 CAGAGTACGTTGAGAGCCA 59 87211899 87211917 TTAACCTCACCATAGCGCT 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666 1 1 2 80 2 23290361 23290381 TGAATTGTATCCAGCCATCCT 59 23290421 23292858 CTTTCCTGTCTGGAATAAGCC 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666 3 1 2 81 2 23290361 23290381 TGAATTGTATCCAGCCATCCT 59 23290422 23292859 GCTTTCCTGTCTGGAATAAGC 59 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000079917 1 1 2 80 5 7660405 7660611 CTACATAGAGAAGCTCATGAGG 58 7660346 7660365 CGCTTGGATCTGATAAACGA 58 NA Rattus norvegicus 81 Tdrd5 ENSRNOG00000004018 ENSRNOT00000090848,ENSRNOT00000005353 1 2 2 80 13 73880824 73889867 GAAGGAAGAGAATGAGGATGAG 58 73880765 73880784 TCATCCCAAATGTCATCACC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000065402 1 1 2 82 5 14287922 14297696 TCCAGGACCTTAGAATCTTGAC 59 14287861 14287879 TCCAACATCATGAGCAGCA 60 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 1 1 2 99 10 88538701 88539127 AAGAAGGAGGTCACCATCG 59 88539190 88539208 TCTCTGATTTGGCCCAGTG 60 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 3 3 3 81 8 90629319 90630522 TCTGCTAAGAAAGAACCCG 57 90629256 90629274 CTTCCTTTCCAGCTTCCTG 58 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675 2 1 2 80 6 147104400 147110362 AAGCCTACAAGAAACTCATCTC 58 147104341 147104360 TGGCAGTGATGTTGAAATGG 59 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 3 2 2 80 13 68754398 68756584 TGAAAGCAGAAGTACCACC 57 68754336 68754355 TGCGTTCAAGTAGAATGGAC 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 3 2 2 81 11 27026480 27026502 CATGGTTTCAACTATTCCCTTCC 60 27024746 27026441 ACCATTTGTACAAGCAAGCTG 60 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 3 3 3 139 1 168946040 168952773 TGAGAACTTCAGGCTCCTG 59 168952876 168952894 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 1 2 2 80 17 12643344 12653925 AAATTCCTGATCAGGGCCA 59 12643282 12643302 GCGATAGTGTAATACCTTCCC 58 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776 2 1 2 93 7 130326793 130331208 AGTATCTGGAGGAGCTGGA 59 130331265 130331283 GAACCCTGGATCAACAGTG 58 NA Rattus norvegicus 81 Asah2 ENSRNOG00000012196 ENSRNOT00000077135,ENSRNOT00000016688 2 2 2 80 1 250621260 250621281 GTCAAATCGAATGGCATTTGTG 60 250615353 250621221 TGTAGTCTCTTCAAGACCTCC 59 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 3 2 2 83 2 24670390 24670408 CCTACACTGAACTGCTGGT 59 24670455 24689819 CAGATGCAAACCTGTAGCC 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 3 2 6 81 1 41928758 41928778 TTCCAGAGACCTTAAACAGCA 59 41928252 41928718 TCTTGCATATTGCTTGACTTCC 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000079371 3 1 3 81 5 136049257 136049275 TGACATTGACGATGTGGCT 60 136049189 136049212 TTCTCCTGCAGTACTGTCC 59 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754 2 1 2 80 9 17742304 17742323 AGAAGAACTGGAGACATGCT 59 17742366 17746330 GAAACTCCTTTGGGACCGA 60 NA Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637 3 1 2 83 5 149982077 149987674 ACTATGCCTAGCAGATCTGG 59 149982013 149982031 ATCATACTGAGCCTGGCTG 59 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 2 2 2 80 8 78892925 78893343 CATCACAAGGTACAAATTGCTC 58 78893381 78893402 GAATATTACACTTGGGACATGC 58 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 1 2 2 80 14 66742819 66744688 CACTAAAGAGGAAATGCTGGAC 59 66744729 66744747 TCTTCCTTGAGGACAGGGT 60 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054 1 1 2 80 X 16144165 16172938 GGGAAATAGAAGGGAACAAGTC 59 16172979 16172997 TTGGCTCCTCCAAGAAGTC 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000045532 3 1 4 84 2 18531194 18544072 AACAAGACAGGTCGAATGAG 58 18531129 18531147 CTTCACTGCAAGGTTCCTC 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000015067 1 1 2 80 2 140322594 140324477 CAAGAAGTCCCGAGTTTATCC 59 140322534 140322552 ACTCCTCTGTTGACACCTC 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192 2 1 2 93 8 54975819 54978583 GGACCAAGAGGTTCTTGCT 60 54975744 54975763 TAGAACATACTACCTGCGCC 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192 3 1 2 94 8 54975819 54978583 GGACCAAGAGGTTCTTGCT 60 54975743 54975763 ATAGAACATACTACCTGCGCC 60 NA Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 2 1 1 60 1 100205058 100205079 ACTTCATCTTCAGTTTCCTCAG 58 100204565 100204583 CAGGCTGAGGAGAATCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000078412 2 1 4 80 20 12859746 12860308 TCAAAGATTATCTTTGGCTGGG 59 12858060 12858079 CAAATGAAGTGTCCCAGGTC 59 NA Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 1 1 1 82 10 55998351 55998371 AAGAATTCCTCAAGCCTTCTG 58 55998574 55998592 GATGTGGTGTCCTGGTACC 60 NA DesignNoJunction Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 3 5 5 125 11 27868022 27876205 AGATTGGGATTTGGAACTCCA 60 27865914 27867936 AGGGCTCTTCCAGAATAGTG 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000081066 3 1 5 102 11 27831407 27831425 TTCATTGTTCTGGCTGCAG 59 27812813 27831342 TTCAGTAATGCTGCTCAACG 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000010482 3 1 4 85 14 80071064 80071082 CAGTCAGTCTCTGTCCCTC 59 80054845 80071019 TCTTATACTGTGAGTAGAGGCTG 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366 2 1 3 172 6 3373055 3444295 CTACAAGGCACGGAATGTC 59 3345402 3355250 TCCAAAGTTTATCTCGCCTG 58 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000084302 3 1 2 83 2 207420796 207473265 TTTGCTAAAGCTGCGATCG 59 207473311 207473330 CGCTTCTGTGAGTTTCTGAC 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 1 2 2 80 9 27408407 27408427 CCATTCTCAACTACATTGCCA 59 27408468 27409549 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 2 2 2 80 14 3217069 3217980 TGGTGAAGTTGTGTAATCCA 57 3218022 3218041 GAGATATCTGTTTCCCGGAG 57 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000077125 3 1 2 81 1 175256112 175284099 GATCAATCTCCAGGGAACG 58 175256049 175256067 TGCAAATACTTCTGCAGGT 57 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000072244 1 3 6 88 13 84513783 84514806 TCAGGCCTTGTATGAAGCA 59 84514858 84514876 CAGAGGGAATGGAGTAGGG 59 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678 1 1 2 142 7 143784233 143784617 TACACGTGGATGCTGACTC 60 143783801 143783819 TTGCTGGAAGAGGTAGCTG 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076069,ENSRNOT00000000787 2 2 3 80 20 21857395 21874599 CAGACACTACGAAAGGTTAATCC 59 21874639 21874657 GGTTTGATTGGAGGCAGAG 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000049303 1 3 5 80 4 176287334 176287353 GATTGGTGTTGGATGTGCAG 60 176282121 176287293 TATTCATATCGGCCCATGAGG 60 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809 2 1 2 82 16 54471466 54471486 GCATTTGAATATGTCGGATGG 58 54469219 54471425 CCAAGAAGACTTGTTGATAAGG 57 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 2 2 2 88 5 136704958 136705433 CAGACACCTGAGAAGCCTC 60 136704556 136704575 TCTGCTCCATTTCCAGACAG 60 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 2 3 3 80 1 87004747 87005048 GATGAATGTCTGTGTCTCCA 57 87005091 87005109 TTGTAACTGCAAGATCCGT 57 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 1 3 3 112 4 149972333 149972351 TACAGAAGGCATCTGTGGT 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000014202 3 1 2 85 16 54114233 54114256 GTCTTACTCATCTAATAGAGCACC 58 54107334 54114189 CTGAGGATCTCTGGCTAGG 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014104 3 1 4 80 10 65316638 65316656 CAAGCAGTATGTGTTTGGC 58 65310826 65316599 GTCATAATCTCTAGGGAAATCCTC 58 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596 3 1 2 82 X 157362154 157362174 AAGCAACTACAGTTCATGGAC 59 157362216 157362691 TCCTTCAGGCTAGAACTACTG 59 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750 2 1 2 80 11 32048106 32048126 CAAGGCTACATCCATGAACTC 59 32048165 32049781 TTTCTGAAAGATCTCTGTGACC 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000084806 3 1 2 80 1 69616217 69618779 TGATCTGTACACAGGGCTG 59 69618823 69618841 CTTCATCCAGGAGCTTCCA 59 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000034991 3 1 3 89 6 10348324 10349065 AGAAGCATGAGAGCAGCTC 60 10349117 10349136 CATAGAAGACCTCCGTCTCC 59 NA Rattus norvegicus 81 Epb4.1 ENSRNOG00000010037 ENSRNOT00000067189 3 1 6 83 5 150162763 150162781 AGGAGACACAGGAACATGC 60 150156364 150162716 AGAATCCAGCCATGTCTCC 59 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 1 2 2 80 5 135445036 135445054 GAGATACAGATGCCCAGAC 57 135445098 135445452 AACTGGACATCATTGGTGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 1 4 10 80 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118026 87118044 CCTCAGGAGTAGATGTGCC 59 NA Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 1 2 2 80 2 257656065 257656085 GGAGACTCCCTTTCATATTCC 58 257656126 257656623 ACCTCTGATCATCTGAGGAC 58 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 2 2 2 80 7 136700864 136704141 ATGAATGCAAGGATCAGACCA 60 136700804 136700822 CGATCTGATGAGACTCGGG 60 NA Rattus norvegicus 81 Vapa ENSRNOG00000014765 ENSRNOT00000086340 2 1 2 80 9 113306782 113306800 GCAGTACAGTTGCAACACC 60 113303110 113306738 CCATGTCGTTCTGCTTCAC 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000082892 3 1 3 80 8 128225404 128229020 TATTCCAGGCCTGAAGACC 59 128225342 128225361 AAGACAGTGAGGACCATCAC 60 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000011185 1 1 2 92 10 55907107 55907126 TCAAGAACTTTCTGCAGCAG 59 55904817 55905850 CCCGAGAACCAGACTTAGG 59 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 1 2 2 80 14 82775367 82775386 AGCTCTCAGAATCATCGTCC 59 82775429 82777079 ACTGCGATGCCTAGATCAC 60 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413 1 1 2 109 11 38088744 38091020 TTGAACTCAGGGTCACCTC 59 38088653 38088671 AAGTTGTAGCCACTGGGAG 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129 3 1 2 105 20 5136996 5137015 ATCCAGCAGGACATTCAGAG 60 5137083 5137930 TATCAGACCGGAGCTTTCG 59 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 1 3 3 90 9 44493705 44571061 CTGGGACTACAGAAGGCAC 60 44571112 44571133 TGCGTATCAAGTGTTTAACCAC 60 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000040162 1 1 2 80 8 55458327 55458345 GTTCCAGTGGAATGACGAC 59 55454422 55458286 GGTGTTGTACTTGGTTTATCGT 59 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000085857 2 1 2 106 2 25088073 25088092 CAGCCTTATCAGACATCCAG 58 25087850 25088007 CTTGAACCTTTCTTCTCTTCAG 57 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000085857 3 1 2 109 2 25088075 25088095 TTACAGCCTTATCAGACATCC 57 25087850 25088007 CTTGAACCTTTCTTCTCTTCAG 57 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155,ENSRNOT00000086433 2 3 3 81 9 100585015 100585033 GAAAGTGCCCAAGAACCTG 59 100583921 100584973 CATGAAACACCTGAGTGATGAC 60 NA Rattus norvegicus 81 Zbtb45 ENSRNOG00000027459 ENSRNOT00000038860 2 1 1 85 1 65566939 65566957 AGCACATGTTCATCCACTC 58 65567651 65567669 TTTGAGCAGATAGTCGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000032299 1 1 2 92 5 73937558 73942300 TTCTGTCGATCCTGGAGTC 59 73937484 73937502 AGAAGAGGATGGTCAGCAG 59 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 2 3 3 122 2 147959524 147959543 GATAACCTGATGTGCGATGG 59 147957465 147959439 ATCTATTTCTGCTGGCGTG 58 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 1 2 2 80 10 88160540 88160558 AAGAGCGAGATCTCTGAGC 59 88160389 88160496 GGATGCTTTCATGCTGAGC 60 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 2 1 1 62 3 137632373 137632396 GGTAGAAGGTTTAAGTGAAGATGG 59 137632331 137632352 CATTTGGATTCTCCTGTTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 2 2 5 112 1 215672161 215673426 AGGAGGAAGAGGAAGTCCA 59 215679173 215679191 GTTCTGACGCTTCTTCTGG 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 1 1 2 82 19 19782085 19782106 GTTACCACATACAGAGATTGGA 58 19781921 19782043 GTAACACCATTTCCATTGCA 57 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000089895 1 1 2 95 7 137290342 137290363 TGAATATCACCTGTGAATCCTC 58 137294512 137303369 ACAATGTAACCCACACTCC 57 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 3 2 4 83 3 152600423 152600441 CAGGAAAGATGCACAGACC 59 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000080168 1 1 2 80 2 149004849 149004867 AAGGAAGATCTGAGGGAGC 59 148997473 149004808 GAGATTGTGCTTTAGTCCACTG 59 NA Rattus norvegicus 81 LOC680885 ENSRNOG00000039749 ENSRNOT00000060975 2 1 1 89 16 8555093 8555111 GTGACATCCAAGACCTGGA 59 8554207 8554225 ATCAGAAGGCGTCTAGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038 3 1 2 110 1 277166032 277166051 ACTTCCATAAGATGAAGGGC 57 277162976 277165959 TGTACTCCACCTCACTCAC 58 NA Rattus norvegicus 81 Pdzd7 ENSRNOG00000032946 ENSRNOT00000043623 1 1 1 80 1 264779161 264779180 TTCTGCTTTGAGACCTACCA 59 264778681 264779118 AAACCTCCACGGCTATCAG 60 NA Rattus norvegicus 81 Cela3b ENSRNOG00000021619 ENSRNOT00000036788 2 1 1 80 5 155764811 155764830 CTGTAACACCCTGAAGAAGC 59 155763940 155764769 TTGTTGGCTATGGTCTCCTC 60 NA Rattus norvegicus 81 Sdad1 ENSRNOG00000022229 ENSRNOT00000030222 1 1 1 80 14 17253111 17253130 ATCAATCCATCGGATCTGCT 59 17253173 17254908 TGTGTACAGAGTCTTCCGC 60 NA Rattus norvegicus 81 Mcoln2 ENSRNOG00000015089 ENSRNOT00000020452 2 1 1 80 2 252065083 252065102 GGTAGCAAAGAAGGGTACCA 60 252065144 252067421 GTCATCACTTCCTCTCCTCC 59 NA Rattus norvegicus 81 Nxt1 ENSRNOG00000004700 ENSRNOT00000006205 2 1 1 98 3 142993680 142993698 AGAGAAACTCTTCTGGCCC 59 142993760 142995847 TTAGGGATCCAGTGACTGC 59 NA InUTR Rattus norvegicus 81 LOC685699 ENSRNOG00000043358 ENSRNOT00000065789 3 1 1 151 X 23468080 23468521 GAGGCAAAGAAGTACTTCCA 58 23465654 23465672 ATCCATTCCTTCAACCCTG 57 NA InUTR Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000066767,ENSRNOT00000086116 3 2 2 80 7 60722195 60723489 GATGATGAGGTCTATCGGGT 59 60722134 60722154 GGAAATTTCAGGATCTCCCTC 58 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712 2 1 2 80 8 50083267 50083285 GCTGGAATTGCAGAAAGAG 57 50083043 50083223 TAAAGCCAGTTCTCCTCCT 58 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115 2 1 3 81 12 46808357 46808463 CTTCTCTGCAGATGAAGCAG 59 46808295 46808313 ATTGTTACTCTCCGGGACG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649 3 1 2 106 2 34255465 34258833 TGTGGTGAAGGTTCTGGAG 59 34258902 34258921 GACAGTCATGACAGACTGTG 58 NA Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 2 2 2 81 10 89403465 89403486 GGAGGAAAGTGGATAGTTAGCT 59 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000009920 1 1 2 85 3 48801446 48810138 GTCGAAATGTCAAAGGACCT 58 48801380 48801399 GGTGCTGTATTTGTTGAGGT 59 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 1 2 2 80 1 219135375 219135395 TTGGATGACCTTTGTCATCTC 58 219135130 219135333 TGACAGTGAAAGCAGTCTG 58 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000003072 2 1 3 87 14 10897135 10897153 CTTCAGCTTATGCACTGCC 59 10897203 10902045 TTCTGAGGACCTGTTCTCTG 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367 3 1 3 81 14 10897135 10897153 CTTCAGCTTATGCACTGCC 59 10900795 10902045 TTCTGAGGACCTTCCAATACAG 60 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000078931 1 1 3 102 10 89182644 89183348 CACTGTTATGTACTCGGAAACTC 59 89183410 89183428 TAGAAGCGGACGATGTTGG 60 NA Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000084198 3 1 2 90 2 178184174 178197720 AACCCTTGTGAGATGGAGC 60 178197773 178197792 TGTCTGAGTCGATCTTCCTG 59 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000064184 1 1 2 80 1 101166910 101166928 AGGTCTGTCCACAAACAGG 60 101166971 101167223 GTTGAACTGGGCTTTCTCAG 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944 2 2 5 104 10 89174753 89174994 CCTTCTTTACGTTACAGCCG 59 89175061 89175079 TCATGCTGGACTGTTTGTG 58 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 3 1 1 60 1 207655047 207655065 CAGAGATGAGAACGACCCA 59 207655727 207655745 CTTCTCACAGTTTGGGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 3 2 2 89 10 89168321 89168340 AAATGTCCTACCTTGCTGGT 59 89168386 89168540 CTGTAATACCTGCTAATCAAAGTCC 60 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945 3 1 2 81 5 150872783 150872801 CTTACCTGCACTACAGGCT 59 150872845 150880369 CATTTGTGCTTGAAGCTGGA 60 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 2 2 2 80 10 59810588 59810606 TATTTCCGAGTCACCGGAG 59 59810647 59812798 CTGCAGGAAATATTGAATCCCT 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 2 3 4 80 9 47030664 47030685 ATCTGCTTCGTTAAGAACACTC 59 47030721 47032111 GTAATTCTTGAAGTCAGGAACTGG 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 1 2 3 166 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147799835 147799853 AGAAGGTGTGCAGACACTC 60 NA Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 3 2 2 81 9 43077782 43078065 CACGTACACTGACAATCGA 58 43078109 43078128 ATTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000061657 3 1 2 126 7 3379290 3379308 GTATACTTGGACCCGGTGG 60 3379398 3383232 TGAAGAATCCCAGCTTCCA 59 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 1 2 2 80 2 28798501 28798522 GATACCTCTGAAATCGAAGGTG 59 28794470 28798465 GAATATTATCACTGAGTCACCCAC 59 NA Rattus norvegicus 81 Mrps24 ENSRNOG00000011979 ENSRNOT00000016207,ENSRNOT00000080848 2 2 2 60 14 85948311 85951511 CACAGGTAACCTGGATGGAG 60 85948270 85948289 AAGGAATACATCCTCCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624 2 1 2 86 1 99949744 99949765 TCATCAGTAGATCCTTATGCGG 60 99948834 99949703 CATGGTAATAGTTGCTATAGCAGTG 60 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551 3 1 3 84 12 47185985 47203596 TTCGGTCAGGATAGATCGT 58 47204380 47204398 AGCCATCTTTGTCCTTGTC 58 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179 2 1 2 105 10 90412713 90412819 TTTCGACCTCAGGGATGAG 59 90412626 90412644 AATGACGTCATTCCAGCTG 58 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 2 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532383 22534333 CTTGTAGACGTTCCTCTGC 58 NA Rattus norvegicus 81 Ide ENSRNOG00000016833 ENSRNOT00000085303,ENSRNOT00000023342 2 2 2 80 1 255942436 255944779 CTCTTATTAAGGATACAGCCATGAG 59 255942380 255942398 AGTTGAGACAAGCTTTCGG 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 3 3 8 89 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364299 4364317 ATCAGAGGTTTCCCATCCA 58 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000038898 1 1 2 80 1 73396101 73397156 TGAAGATGCTCAAAGAGATGC 59 73396041 73396061 TTCTGGTGGAGTCTATCTCTG 58 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452 2 1 2 82 2 44339292 44339311 GACTCTAATTGGAGGAGGCC 60 44337785 44339247 GAGTCAATCGGCTGTTTGG 59 NA Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 1 2 2 80 8 61810251 61811220 TGTCACATTGATACAGCCTG 58 61811263 61811281 CTTCACAGCTGTTGACCAG 59 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347 3 1 2 97 16 71653845 71657641 TTTAATAACGAGTGGCTGCA 58 71661145 71661163 CAATCTGTGAGATCACGGC 59 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900 1 1 2 80 1 72881480 72881750 CCTCTAGAAGCGATGAGCC 60 72881793 72881812 GACTACCTCAGCCTGAAGTG 60 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 2 2 2 80 8 132884299 132884317 TTGCAGACCTAGATGACCT 58 132882217 132884255 GAGCATCTTTGTCCCTGAG 58 NA Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 2 2 2 81 2 34110114 34110132 AGACATGATGAAGTGCGGA 59 34100636 34110069 ATCGTGCAAAGTCAGTCTG 58 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 3 2 2 80 2 227188351 227190467 TGCACCAGGATATTCTGGA 58 227188289 227188310 GACTGGTAGTACTTAGGAACAG 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 1 3 4 80 2 53166095 53179745 TGAAATAGTGCAACCTGATCC 58 53166035 53166053 ATATCTCCACGGATCCCAG 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951 1 1 4 80 2 53157881 53159886 CATGTGAAGAAGATTTCCGGT 59 53157821 53157844 CTACAAATAGCATCACTGCTACTC 60 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 1 2 2 80 3 132958333 133012108 TGTGAGTACCTCAGGATGTG 59 132958272 132958291 TCTTCAGCTTGTAAAGCGTG 59 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114 1 1 2 82 5 159569995 159570013 CAAGCTACAGGCCTACCAG 60 159569844 159569951 TCTTGTACTGCAGGATCTTGG 60 NA Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 2 1 1 60 16 75120353 75120374 TCTTCATTGTAGTTGAACTGCC 59 75119956 75119977 AATGACTGGGAATACTCAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000047761 1 1 2 86 16 75145530 75146005 TGACTTTAGGGTCGTCCAG 59 75146055 75146073 CTTGGGCAGGAAATTCGTC 59 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 2 2 2 80 3 148354055 148354075 AAGGATGAAACTCTGGAGAGG 59 148354114 148357120 ACTCTTTACAGTCTTCTCCCTG 59 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000064400 3 1 2 109 3 171774086 171780556 CTGGACAAGAACGATTCCG 59 171780701 171780722 GTTCTTCAAAGTTGAGAACGTC 58 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 2 2 2 83 3 172177590 172177608 ATCGCAGCATTTCTTCGAC 59 172177655 172178006 TCATCCGTGAAACCCTGAC 60 NA Rattus norvegicus 81 Cdc42 ENSRNOG00000013536 ENSRNOT00000029025 2 1 2 97 5 155702788 155702808 CCTATTACTCCAGAGACTGCT 59 155691741 155702732 ACATTCTTTAGGCCTTTCTGTG 59 NA Rattus norvegicus 81 Gba2 ENSRNOG00000016364 ENSRNOT00000066708,ENSRNOT00000022002 2 2 2 80 5 59070232 59070253 GTACCTGATGAGTGGAGTAGTG 60 59070073 59070191 GGCTCATCATCTGGATCCC 60 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067435 1 1 3 80 5 100439798 100454038 TACTTGGCAAAGTCCTGGT 59 100439736 100439754 ACATTTGCCGGTAAGATGG 58 NA Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 2 2 2 82 3 175887064 176040689 TCGTCATCCAGGTTAACACC 60 176040734 176040752 TTTGTTGGCAATCACGGTG 60 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 3 2 2 81 16 71258290 71260011 CCCAGTATAGAGACTCCAAAGAC 60 71260052 71260070 CAGGGTCCGTAATGTCCTC 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000034141,ENSRNOT00000006634 3 2 3 83 3 51410898 51410916 CAAGACCTTTGGCTTTCCA 58 51408701 51410853 GTGCCATTTACTCCATATCCT 58 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000067508 1 1 2 119 16 81351451 81351469 GTCTGTCACAAACTCGCTG 59 81349438 81349878 TTTCTTCGCAAGTTGCCTG 59 NA Rattus norvegicus 81 U6 ENSRNOG00000057529 ENSRNOT00000077895 1 1 1 60 2 57997117 57997137 CAGTTATGACGACCTAGACAG 58 57997156 57997177 CAAATTTGCATGTCATCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000061662 ENSRNOT00000084684 2 1 1 60 5 150530234 150530252 ACAACGTTGGAGATGAAGC 59 150530192 150530213 CTGAGAAGTCGTAGGAATATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017922.1 ENSRNOG00000060405 ENSRNOT00000087476 3 1 1 81 15 34635922 34636169 AAGAGCTCCTTGGAGAGGA 60 34635859 34635877 GTGATCTTCAGATGGGCCA 60 Novel Rattus norvegicus 81 AABR07010878.1 ENSRNOG00000051664 ENSRNOT00000086522 3 1 1 80 2 154501757 154501780 AGATTTCACCTCACATGCGA 60 154501821 154501841 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000060836 ENSRNOT00000091638 1 1 1 66 2 198597575 198597593 TTATCCATTGCACTCCGGA 59 198597527 198597545 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056014 ENSRNOT00000087465 2 1 1 60 8 116766418 116766440 AAGATCGATGGAAGAGTATACCG 60 116766458 116766478 ATGCTCTATACCAGGTCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056877 ENSRNOT00000084423 2 1 1 60 8 9365361 9365379 TCCCTTTCCTTCCTCACTG 59 9365403 9365421 TCTTCAACCAAGCATGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000059039 ENSRNOT00000082785 2 1 1 60 8 69760816 69760836 CTGTACCTGGTATTGATTGCA 58 69760856 69760876 ATGTATGTGACTGTCTACGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052965 ENSRNOT00000082169 3 1 1 65 8 91224323 91224341 CATTTGCTGTGGACATGAC 57 91224276 91224296 GCTAGTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052471 ENSRNOT00000082689 1 1 1 60 5 39687933 39687956 TACAGAGAAGATTATCATGGCCTC 60 39687972 39687993 TTCCAGGCTGAATGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056286 ENSRNOT00000079873 3 1 1 60 11 27171156 27171174 TGTTTCGCTTGTGCATCAG 60 27171114 27171137 AACACTGGATGTAGTCATATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049764.1 ENSRNOG00000041600 ENSRNOT00000063353 3 1 1 61 5 136907959 136907978 GGACATTGGAAGAAGGAAGG 58 136908002 136908020 TTACTCAGTCCCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061086 ENSRNOT00000081889 3 1 1 66 2 243846078 243846097 TCATGTGGGATCACATACAC 57 243846126 243846144 CATCCTTCCACAAGGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000058606 ENSRNOT00000080499 2 1 1 60 8 13870213 13870231 CAGGTCATGCTTCCATCAC 59 13870253 13870273 AATGTTGCAGGTCTCATTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060579 ENSRNOT00000077684 3 1 1 60 11 85813961 85813981 ATTCCTAGAGGCATTGAGGTG 60 85814003 85814021 CAGGTCAGAACACTGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000053795 ENSRNOT00000083849 1 1 1 61 2 260115222 260115240 GGTCAATGATGTGTTGGCA 59 260115179 260115199 AGAGCTCAAATGTTAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060942 ENSRNOT00000083562 1 1 1 60 16 34695233 34695257 GGTGTTGTTCTTATATCAGTCAGAG 59 34695197 34695217 AAGCTAGGATGAACCAAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061140 ENSRNOT00000077299 2 1 1 60 16 37035380 37035400 CTGGAACATCTATCACCTCCT 59 37035340 37035358 GCCTAGCCAGACAAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060696 ENSRNOT00000077724 3 1 1 60 16 81030654 81030674 AGGACACAGAGATTAGCTTGG 60 81030614 81030634 GGGAACACTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058620 ENSRNOT00000089247 2 1 1 62 16 21397294 21397313 CCAATGAGGTCTATCCGAGG 60 21397251 21397269 CTACAGCTGCCACATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026361.2 ENSRNOG00000054572 ENSRNOT00000089722 3 1 1 60 16 74072487 74072507 TAGTATCGACTCCGCTAAGGA 60 74072447 74072468 AACTGATTATGTTTGGCTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059115 ENSRNOT00000082466 3 1 1 60 X 95958695 95958713 TTATCCATTGCACTCCGGA 59 95958653 95958672 GTCGAGTTTCCAACATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025366.1 ENSRNOG00000045619 ENSRNOT00000074539 3 1 1 65 16 35524608 35524626 GTGGGACTCCTAACAGCAG 60 35524655 35524673 GAAAGGGATCCAAAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058256 ENSRNOT00000091984 3 1 1 60 2 82949123 82949142 GTCACATGCATGTTCACTGG 60 82949082 82949100 CAGAACACTGAGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055427 ENSRNOT00000083041 3 1 1 60 16 70579576 70579598 TTCTACCTTCCCTCATAGAAGAG 59 70579616 70579636 AACACAGCTATACATGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000052277 ENSRNOT00000078472 3 1 1 60 16 10631124 10631145 AGTAATTTACACAGCCAGACAC 59 10631085 10631105 CATATCGGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025065.1 ENSRNOG00000036388 ENSRNOT00000054504 2 1 1 60 16 27094284 27094303 AGCTTTGCATGGAAACTGAC 60 27094323 27094344 CCCACTTCAGATACCTAATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025065.1 ENSRNOG00000036388 ENSRNOT00000054504 3 1 1 60 16 27094284 27094303 AGCTTTGCATGGAAACTGAC 60 27094322 27094344 CCCACTTCAGATACCTAATTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056684 ENSRNOT00000092171 2 1 1 60 16 46532723 46532742 TACTTCAGAAGCATGTAGCC 57 46532763 46532783 TGTAGGGACCTTGCTAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057479 ENSRNOT00000080244 1 1 1 60 16 21047044 21047065 ACGTGTTGTTAGTATGTGTCAG 59 21047084 21047104 AGTCAGAACAGAATACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056975 ENSRNOT00000081177 1 1 1 60 X 21025972 21025990 GTTGATCTGGCTGTCTAGG 57 21026011 21026032 GACTGATGCAAATGAAGTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053676 ENSRNOT00000084384 3 1 1 60 16 33976081 33976103 GATACAGAGAAGATTAGCATGGC 59 33976123 33976141 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061334 ENSRNOT00000079395 1 1 1 60 6 133828796 133828815 CCAATGATGAGATCTGGTGG 58 133828835 133828856 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061649 ENSRNOT00000086337 2 1 1 80 1 121563651 121563670 GGGTCTATGTCGATGATAGC 58 121563710 121563731 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055514 ENSRNOT00000088718 1 1 1 60 X 152074557 152074577 CAAGAAGCATTGCAGTTACAG 58 152074517 152074540 TAGGTCAGATCACTGAGAATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055603 ENSRNOT00000086736 2 1 1 60 6 91645218 91645239 GAGCAGTGTTATTTCTTACGTG 58 91645179 91645200 GCAGTTACTCTGCTAATTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128792.2 ENSRNOG00000057558 ENSRNOT00000091848 1 1 1 100 1 101449940 101449962 GGCTGGAAGATAAAGTGGGA 60 101450025 101450043 CTCTTATCTGAGCAGCGCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000053335 ENSRNOT00000091974 1 1 1 60 4 46079783 46079801 CCTTCAGCAGGACATTCAC 59 46079741 46079763 CTTGACTAGGATTGAGACTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061400.2 ENSRNOG00000060373 ENSRNOT00000091705 3 1 1 83 4 121704316 121704335 TAGCTATGCCACAGTCAGTC 59 121704381 121704402 GCTATTCTGTCAAACATTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057259 ENSRNOT00000092057 3 1 1 71 9 110649033 110649051 GGTGTGGATGCTATGTCAC 58 110649086 110649104 CTCTGAGCACAGACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052033 ENSRNOT00000082748 2 1 1 60 4 54935448 54935466 ACAACGTTGGAGATGAAGC 59 54935406 54935427 CTGAGAAGTCGTAGGAATATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055110 ENSRNOT00000078590 1 1 1 60 2 147058286 147058309 GATGGGTACTAAGTCATTTGTGAG 59 147058328 147058346 AGCTTAGCTATTGCCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055110 ENSRNOT00000078590 3 1 1 60 2 147058285 147058307 GGATGGGTACTAAGTCATTTGTG 59 147058327 147058345 GCTTAGCTATTGCCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052123 ENSRNOT00000091066 1 1 1 60 X 40865772 40865791 AGAGGAGATACCATGACCAG 58 40865731 40865750 TAGAGTGCAGTGAGCAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052274 ENSRNOT00000080290 2 1 1 60 1 5438064 5438082 CTTTCCTCATTGGGAGCCT 59 5438022 5438041 CATACACAATGCCCAGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057864 ENSRNOT00000079306 3 1 1 60 2 213301994 213302012 TAGAGGAGGACCGAATAGC 58 213301952 213301972 CTTTGGGCAAATCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.2 ENSRNOG00000055449 ENSRNOT00000089603 2 1 1 60 3 102703753 102703775 CTGCTTTACACAGATATTCCTCC 59 102703792 102703813 TACAAGGGTTACCATCTCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056313 ENSRNOT00000086604 2 1 1 60 X 32227775 32227796 GATGCAGAGAAGATTAGCATGG 59 32227817 32227835 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053898 ENSRNOT00000084360 2 1 1 60 2 227719240 227719258 TTCCTAGCCATGGAAGAGC 59 227719198 227719218 GTACCAATGAAATGGTGACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000052615 ENSRNOT00000081976 1 1 1 60 3 11869621 11869641 CCTAGGATGACAAAGGAAAGG 58 11869663 11869681 CCCAAGTCAATGCCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052951 ENSRNOT00000087155 2 1 1 60 X 9504861 9504884 CGTCAGTTACAGATTAAACTCCTG 60 9504899 9504921 GTCAAGTACAGTAGTAAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059951 ENSRNOT00000087687 3 1 1 60 2 164737339 164737358 TGTGTCCATGTCAGTAGGTG 60 164737298 164737318 TTGACAGGTCAGAACAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055016 ENSRNOT00000086386 3 1 1 61 9 15830756 15830777 TTGTCATGATATAGGGACATGG 58 15830716 15830740 GGACCACTCCATAAATTTATAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055073 ENSRNOT00000080392 2 1 1 61 17 42568506 42568527 ACTTTGGCTGTGTAACATACTG 59 42568549 42568567 TCACCTTTGTGCATGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056181 ENSRNOT00000088810 1 1 1 60 3 31041569 31041588 AGTAAGACCACACTCCACAG 59 31041528 31041549 GCCACAATATAGTAATGAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056181 ENSRNOT00000088810 3 1 1 60 3 31041587 31041608 TCACACTATTTGGCAGAATGAG 59 31041548 31041571 CATACTAAGTGGTATAGTCCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035238 ENSRNOT00000053361 3 1 1 61 X 106830688 106830707 CTCCCGATCTTGTTTGAACC 59 106830730 106830749 CCCATCCAAGTACTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059357 ENSRNOT00000084517 3 1 1 60 16 20568028 20568046 AACTGACTCCTGGCTACTC 58 20568069 20568088 CACTTCTCCTAGCAAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 3 1 1 64 1 149718189 149718208 TGTGTTCAGATGACACTGAC 58 149718234 149718254 TTGAAAGTATGCACACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061287 ENSRNOT00000080889 1 1 1 60 15 88787231 88787251 GATGTGTCACATGAGCATCAG 60 88787191 88787211 ACACTGAGCATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059930 ENSRNOT00000089566 3 1 1 60 1 9201926 9201944 GTGCCTCAGTAGGTGACAG 60 9201966 9201986 TTGCATTTGGAAGACTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061087 ENSRNOT00000084635 3 1 1 61 6 80224798 80224816 AGGGTAAAGGAACTCTCCA 57 80224841 80224859 CAGGATCCAAAGAGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006742.1 ENSRNOG00000036287 ENSRNOT00000054410 2 1 1 77 1 251158483 251158502 GTCTTTGTTGCAATCCTGTG 58 251158541 251158560 ATTAACAGCTGAGCCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053797 ENSRNOT00000081039 1 1 1 60 1 227935212 227935231 TGTGTCAATAGGTGGCAGAG 60 227935171 227935191 GTACAAAGCTCAGAACTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055884 ENSRNOT00000088014 2 1 1 60 7 119070257 119070278 AAACGATACAGATTAGCTTGGC 59 119070218 119070237 ATGGAACTCAATGCATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686748 ENSRNOG00000051847 ENSRNOT00000090997 2 1 1 60 8 18785986 18786005 TCCCACAAATGCTAAATCCC 58 18786026 18786046 AAGCCTTCTTTCATGTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041374.1 ENSRNOG00000049682 ENSRNOT00000071553 1 1 1 70 X 127804081 127804099 CAGCATTAAGGTGGGTGGA 60 127804133 127804151 AATGCATCAGGGTAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066871.3 ENSRNOG00000061718 ENSRNOT00000085293 3 1 1 113 9 20528638 20528658 CATACGCACATACATTCACAC 58 20528545 20528566 TGTGAATGTATGTGCGTATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039377.1 ENSRNOG00000054546 ENSRNOT00000091088 3 1 1 60 X 74871154 74871173 ACATGTACAAGGGATACTGC 57 74871195 74871214 ACACTCATCAATCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044409 ENSRNOT00000069676 3 1 1 60 X 40233341 40233362 CTGGATCAAGTCAGTACTAGGT 59 40233383 40233401 ACTGAGTCTTCTCACTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056408 ENSRNOT00000084456 2 1 1 60 6 46921260 46921279 CTGTGTCACATGTGCTTCAG 60 46921300 46921320 ACACTGAGCATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109427.1 ENSRNOG00000056259 ENSRNOT00000082987 3 1 1 61 9 100885054 100885072 GTTCCTTTCCCTGTTGCTG 59 100885097 100885115 GCTAGGAGAAAGACCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010944.1 ENSRNOG00000056299 ENSRNOT00000080951 3 1 1 60 2 155555887 155555908 CAACAGCAAGTTTAGAAAGCAG 59 155555928 155555947 CTTGGGAGATCTGTCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061092 ENSRNOT00000079271 2 1 1 60 3 163528956 163528978 CAATTCAGAGGAGATTCACATGG 60 163528998 163529016 ACAGCTTCCTAGATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057172 ENSRNOT00000078873 2 1 1 60 8 36342865 36342884 GTTCATCCTAGCTTGATGCC 59 36342901 36342925 TTATGAGTCCTAGACATAAGACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.2 ENSRNOG00000059160 ENSRNOT00000081495 2 1 1 101 5 163879668 163898845 CACTCTTCAGGGTTTCTTAACC 59 163898907 163898925 ACATCCATGTACAGTGCCC 60 Novel Rattus norvegicus 81 U5 ENSRNOG00000052027 ENSRNOT00000090353 3 1 1 62 8 70698757 70698778 CAGATCGTATAAATCTTTCGCC 58 70698716 70698736 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053594 ENSRNOT00000089558 2 1 1 60 9 41046445 41046467 GAAGAGGCAGAATAAACCTACAG 59 41046407 41046426 TCCCTATTCACCCTACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053157 ENSRNOT00000078693 3 1 1 60 8 79648792 79648811 CATTTAGCAGCACAGATGCT 59 79648833 79648852 CACAGGGACTACAATACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052012 ENSRNOT00000079858 3 1 1 68 9 71697700 71697718 GCTCCTTCTCCAAATGTGG 59 71697650 71697668 GGAGCATAGCATAGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056402 ENSRNOT00000082721 3 1 1 103 4 20016434 20016453 ACCTGAAGCAGTTAACTCTC 57 20016519 20016537 TCAATCTTGACTGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027672.1 ENSRNOG00000059482 ENSRNOT00000085069 3 1 1 117 17 40171132 40171155 AAGGAGGAGCCTGATTGAG 59 40171236 40171254 GCTCCTCTTCAGACTCTCC 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000061591 ENSRNOT00000082866 1 1 1 60 9 10325801 10325819 ATTCTTCACAGTCGGTCAC 58 10325843 10325861 GCAGTAGTGAGAAGAGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000057346 ENSRNOT00000091033 1 1 1 60 16 8066690 8066711 GTGGTGTCCTTATTTCAATCAG 58 8066732 8066750 CAAGCTAGGATGAACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055857 ENSRNOT00000077191 2 1 1 63 2 118692317 118692335 AAAGAGTCACCTTGGTGGT 59 118692272 118692290 AAGACAGCCATCTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062395.1 ENSRNOG00000043616 ENSRNOT00000068883 1 1 1 79 4 174283848 174283867 GCCTTGTTGAAGGAAGTGTG 60 174283909 174283927 AGAGGGAATGCCACTAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057336 ENSRNOT00000090117 1 1 1 60 3 20380839 20380862 CAGTACAGAGAATTAGAATGGCTC 59 20380879 20380899 GGAATGCTTCAAGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056068 ENSRNOT00000088830 2 1 1 60 6 133823321 133823339 ATGATGAGATCTGGTGGCG 60 133823360 133823381 TCAGATGTCTGGATACTTAGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000056619 ENSRNOT00000087738 3 1 1 60 1 231901114 231901137 GTAAAGGTTGCTATCTAAGGTGAC 59 231901155 231901174 CAGATTGCATTACCTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052991 ENSRNOT00000083905 3 1 1 60 3 114557044 114557065 GACCATAATCAAGATGATGGCT 58 114557005 114557024 GTCCATCTCAATAGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053912 ENSRNOT00000087807 1 1 1 62 4 76229736 76229754 TTTACAGGTGTGGTTGCTC 58 76229692 76229712 AGACATAGACTGTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055697 ENSRNOT00000086006 2 1 1 60 4 34460400 34460421 AAGCTGCACATTTCTTTAAGGG 60 34460441 34460460 GACCTACCAAGAGTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053167 ENSRNOT00000079491 1 1 1 60 9 65918930 65918951 CTGGAACAGTATGGAGATTAGC 59 65918970 65918990 CTTCACAAATCTGCATGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057331 ENSRNOT00000079228 3 1 1 60 9 9954468 9954488 ATACCATGATCATGAAGGTGG 58 9954428 9954446 CACATCCAGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000061486 ENSRNOT00000086763 1 1 1 60 10 103280335 103280356 TGTAGAAACTTGGAAGAAAGCC 59 103280296 103280317 GAAAGAAGTATTCCTTGTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000060660 ENSRNOT00000077760 3 1 1 60 4 120182173 120182196 CCTAATAGAGTTTAGTGGCTATGC 59 120182136 120182154 CCTCTTCAGATCATGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043626.2 ENSRNOG00000058304 ENSRNOT00000087801 3 1 1 86 19 33266503 33266521 AGACTGATTTCCACAGTGG 57 33266571 33266591 GCAGATGTGGAGGATATGG 58 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000053313 ENSRNOT00000083519 2 1 1 60 10 12933618 12933636 TCGTACTGTAGCTGTTGGT 58 12933576 12933596 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054243 ENSRNOT00000090974 3 1 1 60 10 13397042 13397060 TATCAGTAGGTGGCAGAGG 58 13397000 13397021 CTAATCATTCGGATGTTCAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066516.1 ENSRNOG00000031079 ENSRNOT00000043571 2 1 1 80 9 10208797 10208819 TGTTTGACTCCCAGATCCAG 60 10208736 10208754 CCTCCTTGTCAATGAAGCC 59 Novel Rattus norvegicus 81 LOC103694487 ENSRNOG00000057166 ENSRNOT00000089271 1 1 1 106 X 63897893 63898089 CAATGTAGTGGAAAGGTGCA 59 63898155 63898176 CTCTTCTTTGTAGGTGGTACAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000056979 ENSRNOT00000079569 3 1 1 61 10 55500052 55500075 CATACTAACATTGGAAGGTCACAG 60 55500094 55500113 TTTGTGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098160.1 ENSRNOG00000055322 ENSRNOT00000086578 2 1 1 80 10 89892906 89892928 AGTGGAGGAACTGACTCTG 58 89892969 89892990 TTCTAAGAACAAACCATCCCTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000053525 ENSRNOT00000080130 2 1 1 60 2 224903686 224903704 TGTTCCACTGCTAGAACCT 58 224903728 224903746 AGAAACACCATGACCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052314 ENSRNOT00000079150 1 1 1 75 2 179615880 179615898 ATTCCTACAGTGCTTGCCA 59 179615935 179615955 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056547 ENSRNOT00000082416 2 1 1 60 X 1791142 1791161 GAATAGCTTGCTCTGTCCAC 59 1791184 1791202 ACCATTCCTAGTGGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690863 ENSRNOG00000057644 ENSRNOT00000078311 1 1 1 137 X 64034782 64034802 AGAACTAGAAGTGGTGAACCT 59 64034591 64034683 TGGCCAAGTTTCATTGGAC 59 Novel Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 2 1 1 61 3 76976072 76976091 AACGTGACTGAATTCATCCT 57 76976112 76976134 AATAGAATTCTCTGAACCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052799 ENSRNOT00000090061 2 1 1 60 10 85256453 85256472 CTTTGGAGGAACACAGAGAC 58 85256412 85256432 TTCATATACTGGCCTGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052799 ENSRNOT00000090061 3 1 1 60 10 85256453 85256471 TTTGGAGGAACACAGAGAC 57 85256411 85256430 CTTCATATACTGGCCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056104 ENSRNOT00000084763 1 1 1 61 12 47549560 47549580 GAAGGGTAAAGGAATTCTCCA 57 47549519 47549537 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC104053.1 ENSRNOG00000057738 ENSRNOT00000082062 3 1 1 81 18 53056468 53056490 TCACCTCACACCAGAATGG 59 53056534 53056553 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000060358 ENSRNOT00000090349 1 1 1 79 X 11866187 11866205 GTAGTGTGCTAAACGAGCG 59 11866126 11866146 GCAAAGGTTACTATCAAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051769 ENSRNOT00000079188 2 1 1 60 X 96455357 96455376 TTGCAGTTATGGCTACTGTG 58 96455399 96455417 GACAAGAGCCTCTTTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058079 ENSRNOT00000087691 2 1 1 64 2 189938517 189938535 TGATACAGAGGAGACCAGC 58 189938560 189938581 GGTGACCATTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004025.1 ENSRNOG00000048533 ENSRNOT00000074828 1 1 1 60 1 122701290 122701308 CCAGCTCTAAGCTGGATCC 60 122701248 122701267 TTCTCTATTGGGCAGACTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052353 ENSRNOT00000080514 2 1 1 60 3 113392035 113392055 ATACAGAGAAGATCAGCACGG 60 113391995 113392015 GGAACATTGCACAGATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012377.1 ENSRNOG00000056468 ENSRNOT00000086434 3 1 1 83 2 194510514 194510532 GCTCCTGAAGACTAGGGTC 59 194509688 194510470 GCATGAAGTATATTCCACTCCA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055165 ENSRNOT00000091591 3 1 1 61 4 22005647 22005665 CACATGTGGGTCAGTAGGT 59 22005690 22005708 AGATGTTGGCAGGTCAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000051369 ENSRNOT00000077431 1 1 1 60 3 4915935 4915954 AAGGGTAAAGGAAGTCTCCA 58 4915977 4915995 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0041.1 ENSRNOG00000056193 ENSRNOT00000089398 3 1 1 99 20 1980947 1982945 GCAAGAAACAGAGCAATCTC 58 1983005 1983025 TCGTCTTCATTAGGATACCGA 58 Novel Rattus norvegicus 81 AABR07006105.1 ENSRNOG00000052685 ENSRNOT00000080189 1 1 1 60 1 220354346 220354365 GGTGGCTTTGAGTGTTACTG 59 220354386 220354406 TACAACTGATACCATCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015556.1 ENSRNOG00000047460 ENSRNOT00000075037 1 1 1 106 14 63307932 63307950 GACAGAGAAGGAGGGAAGG 59 63307844 63307862 AATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054510 ENSRNOT00000086615 2 1 1 65 10 63946019 63946037 AGAGAAGATTAGCATGGCC 57 63945972 63945993 GAGCTATAGGAACAGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051998 ENSRNOT00000086201 3 1 1 61 14 62686965 62686984 AGAGAAGCCATGTCTTCACC 60 62686923 62686946 GTTAGGCTACTAATCATTCAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059283 ENSRNOT00000090130 3 1 1 60 14 21783064 21783082 TTGGTCGAAGATAGCCCTC 59 21783102 21783124 CTACTATACCCTCAACCAAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 1 2 2 80 4 7150069 7150089 GTTCCCTGATTATCCAGACGA 59 7150131 7150554 TCTTGTCTCACCTGCTCTG 59 Novel Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 3 2 2 80 4 7149630 7150064 GAATGCCATGCCCTTACTG 59 7150108 7150126 CTTGTCTGCGAAGATCAGG 58 Novel Rattus norvegicus 81 AABR07051689.1 ENSRNOG00000059910 ENSRNOT00000086557 2 1 1 60 3 19366374 19366392 TTGTGCTCACTCAGTCTCC 59 19366416 19366434 GTGATGGTGACCTTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006160.1 ENSRNOG00000017884 ENSRNOT00000024056 3 1 1 60 1 223549222 223549240 ACGGACAGTTAAAGTCCCT 58 223549180 223549199 TTGTTATCCAAGCGTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004022.1 ENSRNOG00000045763 ENSRNOT00000071788 1 1 1 60 1 122662200 122662218 CCAGCTCTAAGCTGGATCC 60 122662158 122662178 TTCTCTATTGAGCAGAGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059256 ENSRNOT00000083460 2 1 1 60 2 34483467 34483489 GGAACGATACAGAGAAGATTAGC 59 34483429 34483447 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059256 ENSRNOT00000083460 3 1 1 60 2 34483462 34483484 GATACAGAGAAGATTAGCATGGC 59 34483424 34483442 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061330 ENSRNOT00000089797 1 1 1 60 4 10104130 10104148 GTGTCAGTAGGTGGCAGAG 60 10104172 10104190 TGTTCACACGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000051870 ENSRNOT00000082770 2 1 1 60 12 30194169 30194189 AGAGTAATTAACTGCTCTGGG 57 30194209 30194229 ACACTGGACCTTAGGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035427.1 ENSRNOG00000047489 ENSRNOT00000074546 3 1 1 65 12 14102122 14102141 TTACTGTGTAGACCAGGCTG 59 14102169 14102187 TAGCACTTAGGAGGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054372 ENSRNOT00000080081 2 1 1 60 14 100762540 100762560 GGACAAGTCTCTTGTAGTCAC 58 100762579 100762600 CTCTCCCTAAGGCTAGTAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059300 ENSRNOT00000091862 3 1 1 61 10 45963489 45963507 AGAGACTTTGACAGCCCAG 59 45963530 45963550 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057246 ENSRNOT00000084048 1 1 1 60 1 257148174 257148192 CCAAGCAAGCTCTCAATGC 60 257148132 257148151 AGGTTAGAGGCTCTATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060828 ENSRNOT00000078808 3 1 1 60 2 251466910 251466932 GATACAGAGAAGATTAGCATGGC 59 251466872 251466890 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007023.1 ENSRNOG00000056577 ENSRNOT00000086008 3 1 1 251 1 277459510 277459528 TACAATTCCTCCAGTCCCA 58 277459743 277459761 GTGAGTGAGTGTGAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110387.1 ENSRNOG00000054854 ENSRNOT00000080741 1 1 1 60 1 196095269 196095287 AATGCCAGGTCCTCATCAG 60 196095309 196095329 ATCATCACAGTTAGGAACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Pramef20 ENSRNOG00000053942 ENSRNOT00000091592 1 1 1 85 5 162407719 162407737 TAAGCTGGAAAGCCTCCAG 59 162407786 162410506 TCTTCACAGACCCAAGCAG 60 Novel Rattus norvegicus 81 AABR07007730.1 ENSRNOG00000018045 ENSRNOT00000024269 2 1 1 60 2 26085987 26086005 CCTCTGACCTCGCTTATCC 59 26086029 26086047 CGATGTCCCTTGAAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035819.1 ENSRNOG00000046565 ENSRNOT00000073701 3 1 1 69 12 23598977 23598995 CACTCTGTAGACCAGGCTG 60 23599027 23599046 TTAATCCCAGCACTTGGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052890.1 ENSRNOG00000043655 ENSRNOT00000068922 1 1 1 60 3 81106502 81106520 TACTACAAGTCCCAGGGTG 58 81106543 81106562 GCATGCAATGCTCTTATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_1002.4 ENSRNOG00000057321 ENSRNOT00000087976 1 1 1 80 14 100356722 100357098 AAGTTGAGGTTCGCTTTCC 58 100357142 100357160 CTTCAACACCTGGAAGAGC 59 Novel Rattus norvegicus 81 AABR07027519.1 ENSRNOG00000061059 ENSRNOT00000089878 3 1 1 85 17 35129268 35129942 TATTTGAAGGTGCCCTTGGA 59 35129202 35129220 CAGAACCACATGAACAGCA 58 Novel Rattus norvegicus 81 AABR07004949.1 ENSRNOG00000046444 ENSRNOT00000071554 2 1 1 70 1 171520071 171520091 CCAGCTGTAAGGCAATTTCTC 60 171520021 171520039 CCCAGGGATAGTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000053824 ENSRNOT00000087965 3 1 1 60 17 15400576 15400594 TGCCAGTACAGTTCTCCAG 59 15400534 15400553 CCCATGCATAAATCAAAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057962 ENSRNOT00000082737 1 1 1 60 14 31648821 31648839 GTCAGTAGGAGGCAGTGAG 59 31648779 31648798 GATGTCACAGGACAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061497 ENSRNOT00000090862 2 1 1 60 2 124471344 124471366 GGAACGATACAGAGAAGATTAGC 59 124471386 124471404 CTTCACGAATTTGCCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034111.1 ENSRNOG00000060133 ENSRNOT00000086671 3 1 1 132 11 53503597 53503615 AACACAACCACAACAAAGC 58 53503477 53503495 TTTGCTGTGCATTCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034393.1 ENSRNOG00000052264 ENSRNOT00000089347 2 1 1 80 11 68060821 68060844 GAGATTTCACCTCACATGCG 59 68060760 68060779 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC094902.1 ENSRNOG00000053771 ENSRNOT00000082550 1 1 1 60 1 267652363 267652381 CTCCACGGCAGGAATAGAG 60 267652321 267652339 AATCCTCCATCTCGTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058965 ENSRNOT00000088186 2 1 1 60 1 239841698 239841717 TATGAGTCAGTAGGTGGCAG 59 239841657 239841677 TCATAGGTCAGAACATTGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044786 ENSRNOT00000070053 2 1 1 65 2 166385288 166385306 TATACGCCCTGATCATGCC 59 166385241 166385259 TCAATTCAGATGCAGCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056379 ENSRNOT00000088057 3 1 1 60 12 52411665 52411683 GTGCAGTGGTCGTAAACAG 59 52411623 52411641 GACAACCATACAGGCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053266 ENSRNOT00000083648 3 1 1 62 3 171596234 171596253 GGGACTCCAAATCAGAACGA 60 171596278 171596296 TTTATGTCATCCTTGCGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057991 ENSRNOT00000084686 1 1 1 60 2 203106359 203106377 AGCCTCCAAACAAGTTCTC 58 203106317 203106335 TCTTCTCTTTGCCTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059140.1 ENSRNOG00000060116 ENSRNOT00000089932 3 1 1 60 4 4502121 4502141 AGAGCCATTTGAAATGACAGG 59 4502162 4502181 ATGGCTCACTAGAGCATCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056093 ENSRNOT00000092185 1 1 1 60 2 22157942 22157961 CACTAGAGCTTGCAACAGAC 59 22157982 22158002 AAGAAGGATAGCCACTTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.2 ENSRNOG00000059027 ENSRNOT00000082961 1 1 1 83 1 167673269 167673288 CTCCACATCAAACCAGACAC 59 167673334 167673354 CAGGAAATTTCCAGTGCCC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000057436 ENSRNOT00000090132 1 1 1 60 1 139604456 139604474 ATTCTCAATGTGCTGACCC 58 139604414 139604432 CAATCCATCCAGCTGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.1 ENSRNOG00000052420 ENSRNOT00000087848 1 1 1 249 12 2589831 2589849 AATCCGAATGGTTCAGCTG 58 2590062 2590081 TTGATCCACCCTCTTACCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07060632.1 ENSRNOG00000056865 ENSRNOT00000008357 2 1 1 92 4 87404352 87404370 ATAGCATCAGCCACCTGAG 59 87404427 87404446 AATCCACCCAGTACATGACC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061190 ENSRNOT00000088325 1 1 1 60 2 202894249 202894267 TGTGTCAGGTGGAAGAAGG 59 202894207 202894225 GTGTTTGCAGGTCAGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057818 ENSRNOT00000085353 3 1 1 61 1 178184124 178184142 GAGAAGATTAGCATGGCCC 58 178184166 178184185 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052068 ENSRNOT00000081871 1 1 1 60 1 176645957 176645979 GATACAGAGAAGATTAGCATGGC 59 176645999 176646017 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055517 ENSRNOT00000087941 3 1 1 61 1 56863003 56863026 TGACTACAGAAAGTCTAGAACAGG 60 56862965 56862984 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118350.1 ENSRNOG00000036784 ENSRNOT00000055170 2 1 1 60 1 172719118 172719136 TGCAGTGAATCCAGATGAC 58 172719076 172719096 TTCTGAAGACTCCTCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112624.1 ENSRNOG00000056438 ENSRNOT00000083155 1 1 1 60 14 43855047 43855068 CTTCACCAACAGAATACAAGAG 57 43855008 43855029 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112624.1 ENSRNOG00000056438 ENSRNOT00000083155 3 1 1 60 14 43854597 43854617 ACTATGAAAGCCAGAAGATCC 58 43854557 43854577 GGCATTTGTGTTCTCTTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055558 ENSRNOT00000083447 3 1 1 77 2 264595674 264595692 GTGCTTACTTCAGCAACAC 57 264595731 264595751 TTTATCATCTTTGCTCACGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057265 ENSRNOT00000089084 3 1 1 60 2 33531929 33531947 AGGCTTGATCTAGCTGCTG 60 33531887 33531907 ATGAAGTGGTAAGGAAGGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059226 ENSRNOT00000077834 1 1 1 60 1 282379434 282379452 CCAAGGATAGAGCTGGGTG 60 282379392 282379411 CTCTCCAATTACTCTGGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000061657 ENSRNOT00000077629 3 1 1 115 1 282154359 282154377 GCACATTTCATTGACCTGC 58 282154262 282154285 GACTGGCAGAATTACTATATGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056767.1 ENSRNOG00000058819 ENSRNOT00000088769 2 1 1 80 7 40405587 40405610 GAGATTTCACCTCACATGCG 59 40405652 40405671 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07061860.1 ENSRNOG00000043615 ENSRNOT00000068882 3 1 1 61 4 149826578 149826596 GGCCTTGTTGAAGGAAGTG 59 149826620 149826639 CTGGCTTGAACATCTGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061743 ENSRNOT00000090628 1 1 1 60 1 113937971 113937993 CGATACAGAGAAGATTAGCATGG 59 113938011 113938031 CATGCTTTACGAATTTGCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054062 ENSRNOT00000080968 3 1 1 89 2 248718723 248718746 CTGAAGCACATATACTAACACTGG 59 248718657 248718678 TGGATCCCTTCACAAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059280 ENSRNOT00000079657 1 1 1 60 5 136071242 136071263 CAGATCGTATAAATCTTTCGCC 58 136071283 136071302 ACTCAGAGTTGTTCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028414.1 ENSRNOG00000049178 ENSRNOT00000073676 2 1 1 80 17 68389117 68389140 GAGATTTCACCTCACATGCG 59 68389182 68389201 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AC142187.1 ENSRNOG00000036473 ENSRNOT00000054581 3 1 1 64 5 142721661 142721681 ATGGCTACCATACATTGAAGG 58 142721707 142721725 GAGACTACTGTCGGTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA1 ENSRNOG00000057829 ENSRNOT00000087842 3 1 1 60 5 151024583 151024604 AGCTATCTATATCCTCGTCCTG 58 151024544 151024562 TCTGCAACCCAACTATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.6 ENSRNOG00000047713 ENSRNOT00000074576 3 1 1 60 1 121212175 121212194 AGATCTGATCAGTCAGGCTG 59 121212134 121212152 TGGTTATACCCAGGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060403 ENSRNOT00000089786 3 1 1 60 2 54697620 54697639 CACATGTGCATCAGTAAGTG 57 54697660 54697680 GGCAGAATACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056602 ENSRNOT00000077130 3 1 1 60 1 234591799 234591818 CAATTTCTCCCTCACTGTCC 58 234591839 234591859 CCTCTTCAGTGGAGTACACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121415.2 ENSRNOG00000051581 ENSRNOT00000090449 1 1 1 80 2 178336418 178338344 CTCCAGTTCAGAAACCTACCT 59 178338385 178338404 CAAGTAGAATCCAGCCTCCA 59 Novel Rattus norvegicus 81 AABR07067760.1 ENSRNOG00000051624 ENSRNOT00000082300 2 1 1 81 9 61692309 61694020 GAAAGGAAAGGGTGGAGAG 58 61694064 61694083 TTTGGTGCCTCCATATTCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055710 ENSRNOT00000086108 2 1 1 60 14 52485803 52485821 GTGTCAGTAGGTTGCAGAG 58 52485761 52485780 TTCAGATGCCCATAGGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000083614 2 1 5 80 2 123754488 123757916 ATTCGCAGGAACAATGTTCC 59 123757958 123757977 GGTCATGTGATTTCCATGCA 59 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000086063,ENSRNOT00000058552 1 2 5 80 2 123616615 123616635 TTACCATTGATTACACCTGGC 58 123616674 123617702 CTTCCATTTCTGACAATGACTG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000056835 ENSRNOT00000081846 1 1 1 60 Y 83952 83970 CCCGATCTCGTCTGATCTC 59 83910 83929 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061044 ENSRNOT00000077686 3 1 1 63 5 50252875 50252899 GAAGAAAGACTGTATCTATGCTCAG 59 50252919 50252938 TTAGGCTCCCAATCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280,ENSRNOT00000072059,ENSRNOT00000076044 1 4 4 80 5 171690751 171690769 CAAGACCTTTGCCACATCC 59 171687439 171690709 CAGACCTCACATATGAATGGC 59 Novel Rattus norvegicus 81 AABR07003264.1 ENSRNOG00000058252 ENSRNOT00000080576 2 1 1 72 1 103053077 103053095 TACATGGGCACATTTCCAG 58 103053631 103053649 TGTTCTCCCGAACAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000051913 ENSRNOT00000090471 3 1 1 60 6 79926890 79926911 CAAGGATGAAGGAACTACTGGA 60 79926851 79926871 CATGTAGATGGGACAACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA13 ENSRNOG00000059389 ENSRNOT00000078535 1 1 1 60 6 128749262 128749280 TTGCCACGGTGATAATGAC 58 128749220 128749238 AAGCTTCTCTGACTGTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063621.1 ENSRNOG00000055827 ENSRNOT00000077815 1 1 1 60 6 37325272 37325290 AGTAAAGTTCGGGCTGGAG 59 37325311 37325332 TATATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD125 ENSRNOG00000051515 ENSRNOT00000082663 1 1 1 60 14 85277067 85277088 TGATGATTCCTCTTCCTGAGTG 60 85277107 85277127 GTCAGTTTCTTAGAGGCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044505 ENSRNOT00000069772 3 1 1 60 14 34698460 34698480 TCCCATCTCATCTGATCTTGG 59 34698502 34698520 TCCCACTCAAGTACTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054177 ENSRNOT00000089700 2 1 1 60 14 5803105 5803126 TACAGAGAAGATTAGTGTGGCC 60 5803066 5803086 CGGAACTCTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057816 ENSRNOT00000077700 3 1 1 60 14 86881587 86881605 AGAAACTGTGACTGCTGAG 57 86881545 86881566 GTCTGTGACTAAATTCATCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035175.1 ENSRNOG00000050533 ENSRNOT00000073242 2 1 1 68 12 5942218 5942236 TTTCTCTGTGTAGCCCTGG 59 5942268 5942286 AATCTCTGAGTTCGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139927.1 ENSRNOG00000052634 ENSRNOT00000087306 1 1 1 80 8 116349073 116349245 ACCTAAGTGTGCTGCAGAG 60 116349011 116349030 GCAATTTGAGCAGAGTCTCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058502 ENSRNOT00000083630 3 1 1 60 2 107628979 107628999 TGTGTCACATGTATGTCAGGA 59 107628939 107628960 TTCAGATAGGCAGAACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108295.1 ENSRNOG00000059430 ENSRNOT00000083575 1 1 1 60 3 72403293 72403311 ACAGTTCCACAACCTTCCC 60 72403251 72403269 GGTAACTTGCCGAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060215 ENSRNOT00000090363 1 1 1 60 1 207364594 207364615 TCACATGTGAGTCAGTAGTAGC 60 207364555 207364575 GTCAGAGCACTGATTACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0739.1 ENSRNOG00000051360 ENSRNOT00000076498 2 1 1 81 X 73005122 73005140 TTCCTCCAAGAAGGGATGG 59 73005573 73008819 GCATTGCTAAGGTGAGCTC 59 Novel Rattus norvegicus 81 SNORD62 ENSRNOG00000060627 ENSRNOT00000086225 1 1 1 60 3 11243826 11243847 GGTTCCAATAGATCCTTCTGAC 58 11243868 11243886 TGTCCTCTTCATCTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0865.1 ENSRNOG00000051045 ENSRNOT00000075984 3 1 1 88 13 81521220 81521238 TTCCTGAAACCTGACACCA 59 81518467 81521170 AGTGAAAGAGCATCTGTTAGG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061673 ENSRNOT00000085838 2 1 1 83 5 168053589 168053607 AAGGTGGTTTCCCAGAGTG 60 168053654 168053672 AGTTAAGTTTCCCACGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044065.1 ENSRNOG00000028578 ENSRNOT00000030142 1 1 1 79 19 54872628 54872649 CCAAATGTGTAACAATCATGCC 59 54872373 54872589 AATAGTGGCCTCTTAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011697.1 ENSRNOG00000054429 ENSRNOT00000078007 2 1 1 136 2 166319733 166319753 CATGGAGTCTCAGGGTGTG 60 166319615 166319637 CCAGAAGTTTCTTCATACACCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058969 ENSRNOT00000081128 3 1 1 70 5 164201035 164201054 GCTCCAGTAGCACATATCCT 59 164201087 164201105 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054380 ENSRNOT00000090551 2 1 1 60 5 65696139 65696159 CAAGGAGGTGAGTTCTCAGAG 60 65696099 65696117 GGCTTCTTCTGTCTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.4 ENSRNOG00000058821 ENSRNOT00000084170 3 1 1 60 4 117767521 117767540 TCTTTCTGCTCCTACTCCTG 59 117767480 117767498 GTAGCCACATACTCCTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031138.1 ENSRNOG00000030649 ENSRNOT00000043882 3 1 1 60 18 1412585 1412604 GACGTGAAAGACATTGACCC 59 1412544 1412564 CACAATGCAGTTGGGATACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018132.1 ENSRNOG00000045597 ENSRNOT00000085508 3 1 1 60 15 42271013 42271031 AACACATGGAAACAACCCT 58 42270971 42270991 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052832 ENSRNOT00000077460 1 1 1 60 1 245898165 245898184 GGAGGCAGAATAAACCTACC 58 245898124 245898143 ATACAGACTAGGCACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041949.1 ENSRNOG00000058173 ENSRNOT00000083615 3 1 1 82 X 144036670 144036688 CACATGAAGGAGTACCCGG 60 144036605 144036624 TCCCTATCTTGAAGCAGCG 60 Novel Rattus norvegicus 81 ENSRNOG00000054605 ENSRNOT00000092043 1 1 1 83 10 14570127 14570145 TGGTGAATGAGTGGAGCTG 60 14570192 14572382 CTTTCCGTTTGGCACTTCC 60 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 3 3 4 95 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336265 88341872 CCATATTTCTTGCTGCTCCC 59 Novel Rattus norvegicus 81 Dppa1-ps1 ENSRNOG00000028544 ENSRNOT00000037099 3 1 1 60 12 4516888 4516907 TCTCCTACTCCTTCTCCCAG 60 4516927 4516948 CCAAAGCTGATCTGATGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058025 ENSRNOT00000078242 1 1 1 76 1 239184575 239184593 TAGAGCATTGCAGATGTGG 58 239184517 239184535 AGCGTAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004497.1 ENSRNOG00000041552 ENSRNOT00000063305 1 1 1 63 1 146824875 146824899 CTTCTGCTGTAGACTACATAAAGAC 59 146824836 146824854 GCAAGCAGGTGAAGAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0771.2 ENSRNOG00000055485 ENSRNOT00000080128 2 1 1 80 X 77065756 77073616 TGCTAATGCTTCTAAGGTCTC 58 77065696 77065715 ACAGTGGCTTTATCATCCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059972 ENSRNOT00000086139 3 1 1 60 6 52789512 52789530 TGTGTCAAACATGCCTCAC 59 52789470 52789490 AACACTGAGCATAGAAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000058594 ENSRNOT00000080262 2 1 1 68 6 116905062 116905083 AGTAGGAATGTATCCAGAACAC 57 116905015 116905033 CTCTACTAGAAGGCTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000052791 ENSRNOT00000077654 3 1 1 60 3 63024814 63024832 TGGCAGCTGATACTTCAGG 60 63024772 63024791 CAGCTATGAACCGATCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057303 ENSRNOT00000086462 3 1 1 60 1 100213553 100213574 TAGCTCTGTTATTTCTGTCACC 58 100213593 100213613 GCTAGTCAGATTAGTCGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.3 ENSRNOG00000054804 ENSRNOT00000084028 2 1 1 80 15 31041981 31042176 AGATTTGCTGGGTGAGAGG 59 31042218 31042238 TCAGAGAAGAATTGGTTCCCA 59 Novel Rattus norvegicus 81 AABR07017783.3 ENSRNOG00000054804 ENSRNOT00000084028 3 1 1 80 15 31041980 31042175 CAGATTTGCTGGGTGAGAG 58 31042218 31042237 CAGAGAAGAATTGGTTCCCA 58 Novel Rattus norvegicus 81 AABR07047041.1 ENSRNOG00000048432 ENSRNOT00000072046 2 1 1 65 5 16959186 16959204 GAAAGACTCCTAACGGCAG 58 16959139 16959157 AAAGTGGCCTAAGGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1340 ENSRNOG00000053238 ENSRNOT00000079362 2 1 1 60 8 43970373 43970391 AGCATAGGGAATCACTCCA 58 43970331 43970349 CTGGCTCCTCAGTTAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 1 2 2 93 2 208550253 208550271 TTGTGTACTGATTAGCGGG 57 208550328 208550854 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000060036 ENSRNOT00000091776 1 1 1 64 1 196649594 196649613 GCTTACCAATTGGAGTCCAG 59 196649549 196649567 GAAGGCACAAATGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000061755 ENSRNOT00000086489 1 1 1 63 1 3952654 3952672 TTGAGTTCAGTTCAGGGCA 59 3952609 3952627 AGCCAATTTCCATGTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000051969 ENSRNOT00000079223 2 1 1 60 1 48030521 48030544 CCTAATAGAGTTTAGTGGCTATGC 59 48030484 48030502 CCTCTTCAGATCATGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045327 ENSRNOT00000070594 1 1 1 60 1 87612009 87612027 CTAAGGCCATAACTGCCCT 59 87611967 87611985 GACCCTGCTAGCTTCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057423 ENSRNOT00000078539 1 1 1 60 1 147397268 147397289 GAATGATACAGAGAAGATTGGC 57 147397309 147397328 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056113 ENSRNOT00000080970 2 1 1 60 1 69630391 69630412 TTGATTCGGTTAATGTGACTGG 59 69630430 69630451 GAGAAATATGGAACAGTGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051526 ENSRNOT00000084524 1 1 1 60 6 67112895 67112916 GTTGACTTGAATGGTCTGACTG 60 67112936 67112955 AGCTAGAACAGTGAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025301.1 ENSRNOG00000060395 ENSRNOT00000082590 2 1 1 101 16 32509993 32510012 AGAGCCTGAAGAATTTGTGG 58 32509748 32509929 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061568 ENSRNOT00000079065 2 1 1 60 6 8579248 8579270 GGAACGATACAGAGAAGATTAGC 59 8579210 8579228 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061214 ENSRNOT00000088452 3 1 1 60 5 150492129 150492148 CTCATAGCCATGGGATCTCC 60 150492171 150492189 ACCTGGCTGTCAAAGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056634 ENSRNOT00000084542 3 1 1 60 14 33240237 33240258 ATACAGAGAAGATTAGCATGGC 58 33240198 33240217 TGGAAGCTTCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 1 1 1 60 10 35058564 35058582 TGTGTCACTCCCAGATTGG 59 35058521 35058540 TTTCCTGCATTTCTTGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032255.1 ENSRNOG00000028381 ENSRNOT00000033768 3 1 1 69 18 56965395 56965413 AATTCCCTTTGCGTGAGAG 58 56965339 56965358 GTACAAGAAAGCCCACTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054198 ENSRNOT00000085700 2 1 1 60 4 93723022 93723043 CACATGTATCAGTAGGTGACAG 58 93722983 93723003 AGGCCAGAATACTGATCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.1 ENSRNOG00000055292 ENSRNOT00000087602 2 1 1 60 5 25727354 25727374 TCAAATGAGAAGACACAAGCC 59 25727394 25727414 ACAGACAGGAACAGTCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060805 ENSRNOT00000091199 2 1 1 85 5 81732281 81732301 CTGCACTTATTTCAGAAGCAG 58 81732216 81732234 AATTTGTGCCATCCTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055615 ENSRNOT00000085884 1 1 1 62 2 32319588 32319609 GAACGATACAGAGAAGATTTGC 58 32319547 32319568 GAACTTAACAGATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061124 ENSRNOT00000082915 2 1 1 60 1 116982237 116982257 CAACAGAAAGTCAAGAACAGG 58 116982197 116982216 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037058.1 ENSRNOG00000053827 ENSRNOT00000081308 1 1 1 133 X 11082209 11082235 TCCTAATTTCACCTTTGAGTGC 59 11082328 11082347 CCAATTCCAAGTACCAAGCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055214 ENSRNOT00000083311 1 1 1 60 7 16079615 16079633 AGTAGGTGGCAGAGAAGAG 58 16079573 16079594 AGATGTTCATAGACCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058896 ENSRNOT00000077643 1 1 1 60 6 30630936 30630954 GATGAAGAACGCAGCTAGC 59 30630977 30630996 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051348.1 ENSRNOG00000059455 ENSRNOT00000081193 2 1 1 80 3 5328191 5328209 AGACTTTGCTATTGCTGCC 59 5326065 5328148 AACATGTTTCGACCCATGAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054161 ENSRNOT00000082510 3 1 1 60 5 27614535 27614553 TGTACCTAGAGGTGTTGCA 58 27614493 27614511 TCTTGCCACCTACAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053475 ENSRNOT00000085627 2 1 1 62 3 61498748 61498771 GAACGATAGAGAAGATTAGCATGG 59 61498709 61498727 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028568.1 ENSRNOG00000053515 ENSRNOT00000085840 3 1 1 60 17 75190915 75190935 CCTATAGCTTTGGCAGTTGAG 59 75190954 75190975 TGGAAGTTGAACTTAGGTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059142.1 ENSRNOG00000059626 ENSRNOT00000089919 1 1 1 168 4 4690126 4690144 GACGTAAGAGCATCGTGGT 60 4689973 4689991 TCTTGGTGACTGAGCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053830.1 ENSRNOG00000055829 ENSRNOT00000077755 2 1 1 60 3 129462760 129462778 GCTTTGTGGATCTCATGCT 58 129462799 129462820 ATCAAGTAGGCAGCATATAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072440.1 ENSRNOG00000033030 ENSRNOT00000042119 2 1 1 60 15 18532698 18532716 TCCCAACTAAGAGACCACC 58 18532656 18532674 TCCACCAAAGTGGTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044405.1 ENSRNOG00000055272 ENSRNOT00000087702 3 1 1 60 20 4808260 4808281 ATACTACGTGAAACTGAAGGAC 58 4808221 4808241 GACATCGAGAAGGTCAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060610.1 ENSRNOG00000033748 ENSRNOT00000041683 3 1 1 60 4 85215670 85215689 TGAGATTGTCAACATTGCCC 59 85215712 85215730 TCCAGAAAGTTCTCTGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000055560 ENSRNOT00000091141 2 1 1 60 1 101122230 101122251 TCTGTGATGAGCAATAATCACC 59 101122191 101122210 ATGGGTTGATCTCACAGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060163 ENSRNOT00000086566 3 1 1 60 5 135496259 135496277 CGACACAGAGAAGGTTAGC 58 135496300 135496319 GAAGCTTCAGGAATTTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000057313 ENSRNOT00000080796 2 1 1 97 3 164163731 164163749 TAAGTCAGCCTGTCCTAGC 59 164163652 164163670 CTCAGACAGTTCCTTCTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053911 ENSRNOT00000080515 3 1 1 60 20 45874493 45874515 ATGATCTAGTTCTGTCACTCCAC 60 45874534 45874553 CATCTAACCAGCCGTATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110351.1 ENSRNOG00000031220 ENSRNOT00000043975 3 1 1 60 5 58184980 58184998 ACCACGGAAAGTAGTTGGT 59 58184938 58184959 CTGAGATTCTTTGCCATAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047580.1 ENSRNOG00000043726 ENSRNOT00000068993 3 1 1 66 5 38293096 38293114 AAAGCAATGTTTGACAGGC 57 38293142 38293162 CAGAGTCAAGCACAAATACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.1 ENSRNOG00000050010 ENSRNOT00000075743 1 1 1 60 13 85672646 85672664 TCTTGTTACAAGCGCATGG 59 85672604 85672625 GTTAGAAATGCAGAATCTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0812.2 ENSRNOG00000058128 ENSRNOT00000090235 3 1 1 92 9 81399136 81399154 CATGTCTGAAGAGCAGCAG 59 81399210 81400070 CGTGGTTTCCTTGATGCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055134 ENSRNOT00000085509 3 1 1 60 13 109881375 109881393 CTCCATTGAGGAAGACGAC 58 109881417 109881435 TTCCATACCCTGACCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060944 ENSRNOT00000086973 2 1 1 60 10 28889724 28889743 CTGCACTGGATTCCAAAGAC 59 28889766 28889784 ATGACAAAGGACACTGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060944 ENSRNOT00000086973 3 1 1 60 10 28889725 28889743 TGCACTGGATTCCAAAGAC 58 28889766 28889785 TATGACAAAGGACACTGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056766 ENSRNOT00000077540 1 1 1 60 15 94701908 94701926 CAGACAGGAGACAGTTGTG 58 94701866 94701887 AGAGATTGTTAGGAGTTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060813 ENSRNOT00000091160 2 1 1 60 13 100452045 100452064 CTGAAGCTAAACAGGAGAGG 58 100452004 100452025 ATCCAATCACTGTCATTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044555 ENSRNOT00000069822 2 1 1 60 15 43258155 43258174 TACCACTCTAAATGTGCCTG 57 43258114 43258132 AACTAACCAGGTGTGACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053254 ENSRNOT00000086636 2 1 1 60 20 46535683 46535701 CTACCCTTGCTTGGAAGTG 58 46535641 46535661 GCTTGTTTGGAGATTTCTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044555.1 ENSRNOG00000041610 ENSRNOT00000063363 1 1 1 60 20 10530692 10530710 TTCTCCTGTTTGCCTCGAG 60 10530734 10530752 AGCTGTGAATGGAAGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052295 ENSRNOT00000088285 1 1 1 60 3 38037706 38037727 GAGAGGCTATGTCTACACTCAG 60 38037743 38037766 GTTAGCTACTAATCATTCAGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060531 ENSRNOT00000081005 2 1 1 60 19 37117713 37117735 GATACAGAGAAGATTAGCATGGC 59 37117754 37117773 GAACGCTTCACGTATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010085.1 ENSRNOG00000054039 ENSRNOT00000086831 2 1 1 92 2 122690589 122690607 AAGCCTCTTGTTCCCTGTC 60 122690662 122694243 GGACAATCTACTTTGAGACACC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052805 ENSRNOT00000086601 3 1 1 60 13 100177991 100178010 ATCTGTCATCCCATTGGTCC 60 100178031 100178051 GAACATCTGCTTATCCATGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055727 ENSRNOT00000053449 1 1 1 60 19 54166981 54167001 CCTGATCTTGTATGATCTCGG 58 54167022 54167041 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052571 ENSRNOT00000087974 1 1 1 60 X 81921167 81921188 AACGATACAGAGATTAGCATGG 58 81921209 81921227 AAACGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057223 ENSRNOT00000087136 1 1 1 60 X 10460335 10460356 CGTCAGTTACAGATTAAACTCC 57 10460373 10460395 GTCAAGTACAGTAGTAAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060013 ENSRNOT00000078147 3 1 1 60 19 31615888 31615908 GCTCATTGCAAGATTTGTCAC 59 31615848 31615866 GTCTCCTCTAGTCTGACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058826 ENSRNOT00000088154 1 1 1 60 1 270022489 270022507 AAGATCCCACAGAGCATCC 59 270022447 270022466 AACATGCAGCTTAGGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060679 ENSRNOT00000081591 1 1 1 60 18 60285908 60285927 GAGACAGAACAAGTTAGCCT 57 60285867 60285885 GGCCACTTCACAGATTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056288 ENSRNOT00000092025 1 1 1 61 13 58388658 58388679 TCTCAATTGATTGCTCGTAGTC 59 58388696 58388719 GAAGTGTGGAAAGTATAGAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053426 ENSRNOT00000082155 1 1 1 60 19 17357786 17357805 TGTGTCAGTAAGTGGCAGAG 60 17357825 17357846 TGACAGATCAGAACATCAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055143 ENSRNOT00000077673 3 1 1 60 13 90650394 90650413 TGAGTTCAAGAGTTCTGGAC 57 90650435 90650454 CTGGACTTAGTGTGAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054117 ENSRNOT00000088690 2 1 1 60 5 36591878 36591896 TGCTATGTTGCATGAGCCT 60 36591918 36591938 ACACAGAGCAAATACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056732 ENSRNOT00000087228 1 1 1 60 18 62405938 62405958 ATTCCTTGTGCATCTTCTTCC 59 62405979 62405998 CCAGCAAAGGTTGTCTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043573.1 ENSRNOG00000046882 ENSRNOT00000054555 3 1 1 61 19 29481761 29481779 AGGCTGTCTTGCTTAATGC 59 29481804 29481822 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053714 ENSRNOT00000078852 1 1 1 60 15 19143451 19143470 ACGACCTTCCCTGAATAGAG 59 19143492 19143511 AGCACAGCTACTCGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043915 ENSRNOT00000069182 3 1 1 60 3 103957838 103957859 AATCTCATCTGATCTTGGAAGC 58 103957799 103957819 TCTGGCTCAGATTCAAATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054720 ENSRNOT00000078621 1 1 1 60 19 34524197 34524217 GGGAGAACCTATGTTTCACTG 59 34524235 34524257 GTGTTAGGCTATGAATCGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057467 ENSRNOT00000081742 2 1 1 69 5 133644746 133644765 ATCCACTGTACTCCAGATGC 59 133644696 133644714 CAAATCATGCAGCCGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056090 ENSRNOT00000078357 1 1 1 60 4 40615246 40615266 TTATCAGTTGAGTGACAGAGG 57 40615286 40615306 GTACATAGGTTAGAACACCGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052908 ENSRNOT00000081038 2 1 1 62 7 140132879 140132897 TTCAAGCAGACGCCTAGAG 60 140132835 140132854 TCTGTTGAAGTCCAGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056234 ENSRNOT00000091233 1 1 1 60 5 123058856 123058874 TCGATGAAGAATGCAGCCA 60 123058897 123058916 CCATGATCAATGTGTCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055291 ENSRNOT00000079574 3 1 1 60 4 102866480 102866498 ACCTACAGGTAAAGCAGGT 58 102866438 102866457 CTCTTCTATGCCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059631 ENSRNOT00000090635 1 1 1 60 4 112572684 112572704 GTCACATGTCCATCAGTAGGT 60 112572724 112572744 ATCAGAGCACTGAGCTTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054027.1 ENSRNOG00000047995 ENSRNOT00000070910 2 1 1 60 3 137018719 137018737 CTCTGTGTAGCCCTAGCTG 59 137018761 137018779 CTGAGTTTAAGGCCAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054120 ENSRNOT00000082194 3 1 1 60 18 17811638 17811657 ATCTGGGAGTAGTGTGACTG 59 17811597 17811615 AGCCTAATCAACCCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057897 ENSRNOT00000085806 3 1 1 60 X 41163576 41163594 AAAGCTTTGAGTCCCTGAG 57 41163534 41163552 TATCTGAGTTGGTCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054456 ENSRNOT00000083716 3 1 1 60 15 101142886 101142906 CAAGGGTATAGGAGTAGCTGC 60 101142923 101142946 CATAGTGGATTACCTTGTTTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130053.1 ENSRNOG00000049798 ENSRNOT00000071763 1 1 1 63 3 163658451 163658469 TTTCTCTGTGTAGCCCTGG 59 163658496 163658514 TTGAGTTCAAAGCCAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045261 ENSRNOT00000070528 3 1 1 60 3 149709982 149710001 TCTCATCTGGTGTCAGAAGC 60 149710023 149710042 TTAACACCTCTCATCCAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000055955 ENSRNOT00000080673 3 1 1 74 5 35951226 35951244 ACTCTGACATAGTGGTGCA 58 35951279 35951300 ACCTCTAATATTGTGGAAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.3 ENSRNOG00000056285 ENSRNOT00000088974 1 1 1 80 6 139406422 139406442 AAATGGACAGTCTGAGGTCTG 60 139406478 139406773 CTCCATAACAGTAACATTCACTCAC 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056663 ENSRNOT00000079331 1 1 1 60 18 46914181 46914199 GACTCCGTTAAGAACGCAC 59 46914139 46914158 CCATGATCAATGTGTCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057838 ENSRNOT00000082643 3 1 1 60 5 162797879 162797897 GCTTATCCATTGCACTCCG 59 162797921 162797939 CGAGTTTCCCGAATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053330 ENSRNOT00000077713 2 1 1 60 5 54337278 54337296 GAAGATTTAGCATGGCCCT 58 54337319 54337338 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095278.1 ENSRNOG00000020749 ENSRNOT00000028152 1 1 1 60 10 89509932 89509953 CAGGCGAATTAGAGATGAACTG 59 89509974 89509992 CACATCAGCAACCATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.1 ENSRNOG00000052226 ENSRNOT00000081761 1 1 1 88 X 123803252 123805426 TACTATGTGTCCAAGGGCC 59 123803182 123803202 GAACAGATGACCATAGCTGAG 58 Novel InUTR Rattus norvegicus 81 AABR07032622.1 ENSRNOG00000051848 ENSRNOT00000086400 1 1 1 138 18 74006049 74006068 GCTGAATTCAGTCCTCAGAG 58 74102608 74102626 TTGAACAGGACGTTAGTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000056195 ENSRNOT00000085457 3 1 1 60 3 95997512 95997530 AGTTGGAATAGGAGCTTGC 58 95997553 95997572 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.3 ENSRNOG00000057421 ENSRNOT00000081684 2 1 1 106 6 139551785 139551888 CATTTCCAACCTGTGTCCTG 59 139551957 139551975 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000052997 ENSRNOT00000081858 1 1 1 60 9 99150843 99150861 AGAGACTTTGACAGCCCAG 59 99150883 99150903 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120727.1 ENSRNOG00000009609 ENSRNOT00000012762 1 1 1 80 X 1615491 1615513 GATTATCAAGCAGAGGCAGAG 59 1615431 1615449 TTTGGATCAATGGTTGGCA 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000054994 ENSRNOT00000082070 1 1 1 60 7 126244058 126244078 GGTGTTGTTCTATCAGTCAGG 59 126244018 126244039 ATCAAGCTCAGATGAACAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058297 ENSRNOT00000082526 2 1 1 60 3 7177504 7177524 ATACAGAGGTTAGCATAGCCC 59 7177545 7177564 TATGGAATGCTTCACAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052720 ENSRNOT00000085992 3 1 1 61 X 158258544 158258562 ACAGAGATTAGCATGGCCC 60 158258501 158258520 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055443 ENSRNOT00000088477 3 1 1 61 X 139963328 139963348 AGGATGAAGATGAGATTAGCC 57 139963287 139963306 AAATACAGATGGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD94 ENSRNOG00000055675 ENSRNOT00000083533 3 1 1 60 4 99797598 99797617 TGAATGTATGTGCTCTGCCT 60 99797557 99797576 TCATGTATGTGAATGCCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055774 ENSRNOT00000081532 2 1 1 69 X 96926262 96926282 CTACCACCTACAGGTATAGCA 58 96926213 96926231 TTCTGTGCCACCTACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060859 ENSRNOT00000091433 3 1 1 60 4 23688775 23688795 CAGCAGTGTGGTATTGTAAGC 60 23688735 23688753 TCATGCATAAGGAATGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060291.1 ENSRNOG00000053744 ENSRNOT00000090055 1 1 1 60 4 66236902 66236920 ATTCAGATGGGCAGATTGG 58 66236941 66236962 TATTCAGAAAGGGAAGCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060291.1 ENSRNOG00000053744 ENSRNOT00000090055 3 1 1 60 4 66236903 66236921 TTCAGATGGGCAGATTGGG 60 66236942 66236963 ATATTCAGAAAGGGAAGCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058584 ENSRNOT00000087202 3 1 1 60 15 27845186 27845204 TGTAATGATGCAGAGGACG 57 27845228 27845246 GCTTCAGGAATTTGAGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.5 ENSRNOG00000061647 ENSRNOT00000082576 2 1 1 100 6 139654369 139654471 TTCAAAGCTGTGTCCTGTC 58 139654287 139654305 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052476 ENSRNOT00000089337 1 1 1 66 5 99476610 99476628 TAGGTGTGGCTACTCTGTC 58 99476562 99476580 ACAGTAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057640 ENSRNOT00000077160 2 1 1 60 5 43674578 43674600 GATACAGAGAAGATTAGCATGGC 59 43674615 43674638 GAACTAGGAAAGTGAATACTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.6 ENSRNOG00000058444 ENSRNOT00000085381 3 1 1 87 17 44744806 44744824 ATCCAGGGCATCACTAAGC 60 44744737 44744755 GGGTCTCCTCGTAGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044895 ENSRNOT00000070162 2 1 1 60 4 121147381 121147400 TCTCATCTGATCTCCAACGC 60 121147340 121147358 TCTTCCTCTGAGCCAAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055173 ENSRNOT00000089437 1 1 1 60 15 35649501 35649523 TCAGTCAAGGGTATATCAGTAGC 59 35649463 35649482 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059107 ENSRNOT00000082032 3 1 1 60 4 53535268 53535287 CTGTGTCTCTTGTGCATCAG 59 53535227 53535249 ATACTGGGCATAGATGTATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061200 ENSRNOT00000088436 3 1 1 60 15 85171659 85171678 TGGTCAAGGGTATACGAGGA 60 85171618 85171636 AACTGAGAGCCTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055740 ENSRNOT00000087650 1 1 1 60 20 2971954 2971974 CTAGAACTTCCAAACAGGCTC 59 2971992 2972014 AGACTTCACCTCATAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035243 ENSRNOT00000053366 3 1 1 60 11 83746282 83746301 CTCGTCTGATATCGGAAGCT 59 83746318 83746342 ATATTCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044437 ENSRNOT00000069704 1 1 1 60 20 55529409 55529430 ACTCAGTGTAGTCTGATCTTGG 59 55529450 55529469 CCCACTCAAGGATTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055897 ENSRNOT00000088563 2 1 1 60 4 179556365 179556383 CTCCTTCCTCCCTTACCAC 59 179556323 179556346 GAAGACTAGTTCTCTTCTATTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056822 ENSRNOT00000086741 1 1 1 60 5 39954115 39954133 AGAAGTGGGTTGGTAGGTG 59 39954073 39954094 AGTCAGAACACTGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055415 ENSRNOT00000085192 3 1 1 60 20 10593492 10593514 GTTAGAACGATACAGAGATCACC 59 10593454 10593472 CCTCTTGAATTTGCATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057066 ENSRNOT00000077536 2 1 1 61 11 54256359 54256377 AGAGACTTTGACAGCCCAG 59 54256400 54256420 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050160.1 ENSRNOG00000041443 ENSRNOT00000063196 2 1 1 60 5 153861513 153861531 TTAGGCTCACAAACGACGA 59 153861471 153861489 TCCCAAATACTTCCTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054193 ENSRNOT00000078385 1 1 1 60 7 124020912 124020931 GAGTCCTCACTGCTTATGTG 58 124020954 124020972 TCGCCTTAGATAGCAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061628 ENSRNOT00000090185 2 1 1 60 19 33861483 33861504 TTGCGTCTGTAGGAATAAAGAG 58 33861444 33861464 CACAGGTTCAGAACACTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034673.1 ENSRNOG00000059680 ENSRNOT00000084380 2 1 1 115 11 83483453 83483492 TTGATCATCTTCGTGGGCA 59 83483356 83483375 TCTAAGTCATTCTCACCGGG 59 Novel Rattus norvegicus 81 AABR07014123.1 ENSRNOG00000054053 ENSRNOT00000090361 1 1 1 97 14 1501066 1502813 ATAACGTGCAGAGTTCTGC 58 1500987 1501008 AGCTAAGCTTATACCAAATCCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000061437 ENSRNOT00000077190 1 1 1 64 11 67314312 67314333 CGGCATGTCTATTTAACATTGG 58 67314269 67314288 TACATCATCCTTGGGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060986 ENSRNOT00000084951 3 1 1 83 11 35841918 35841937 CAATGAGGTTTATCCGAGGC 59 35841983 35842001 GGGCTGAGAGGATTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115473.1 ENSRNOG00000060981 ENSRNOT00000088844 3 1 1 61 4 115218299 115218318 TCAGCTGGAATTCATGAGAC 58 115218257 115218275 TTGCGGATGTCAATGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061323 ENSRNOT00000084037 3 1 1 60 9 64111884 64111902 ACGTATGCATCAGTAGGTG 57 64111842 64111860 CATGGGTCAGAACACTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054190 ENSRNOT00000086664 1 1 1 60 11 85373439 85373462 GAAGGATACAGAGAAGATTAGCCA 60 85373481 85373499 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.1 ENSRNOG00000049084 ENSRNOT00000072234 1 1 1 60 9 34552797 34552815 AGCAATCTGGTCTCTGAGG 59 34552755 34552776 CTCAAAGGAACAAACTCAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034761.1 ENSRNOG00000037898 ENSRNOT00000034210 2 1 1 87 11 88570261 88570281 GCCTGTAATGACACCTTCAC 59 88570330 88570349 AATAAAGGATGCCAGCAAGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059462 ENSRNOT00000082232 2 1 1 60 19 9121354 9121373 TCACATGTGAGTCAGTAGGT 58 9121395 9121414 TCATAACACTGAGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052131 ENSRNOT00000091169 1 1 1 60 4 150159681 150159700 AGGGCTATGTCTATGCTCAG 59 150159640 150159661 TGTTAGGCTACTACTCATTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000054676 ENSRNOT00000086482 1 1 1 60 19 55875031 55875052 AAGTTTCCCTGACTGTGTAGAG 60 55874992 55875011 GATGCTGTTTGCTGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014132.1 ENSRNOG00000052854 ENSRNOT00000073831 2 1 1 82 14 1691100 1691924 CGGGACCACAGAAATAGCA 60 1691970 1691988 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058878 ENSRNOT00000087545 1 1 1 60 11 82036649 82036669 CAAACAAGCTCTTAAGGTCCA 59 82036609 82036630 GGGATGTATCAGATGACTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058878 ENSRNOT00000087545 2 1 1 60 11 82036730 82036749 GAAGAGGGTGATCTTCCCTG 60 82036689 82036709 CTACTTGTCTACCCTTGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035926 ENSRNOT00000054049 3 1 1 60 18 59604065 59604085 GATCTCGTTGTCTCATCTCAG 58 59604025 59604047 TCCCATTCAAGTACTATCTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054471 ENSRNOT00000085417 3 1 1 60 19 28930880 28930902 GATACAGAGAAGATTAGCATGGC 59 28930922 28930940 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058319 ENSRNOT00000079663 1 1 1 60 18 74218080 74218098 TTCCCTGTAGAGGAGAACC 58 74218038 74218058 AATGAAGGAAAGCAGCTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060748 ENSRNOT00000091291 2 1 1 66 5 68794323 68794341 GCATCAGAAGGTGGTAGAG 57 68794275 68794293 CAGATGTTCACAGGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120246.3 ENSRNOG00000055053 ENSRNOT00000079465 1 1 1 85 19 25839662 25839680 AAGTGGACCAGAGTTCCAG 59 25839730 25839750 GCTTTCAGTATGTCCTGGTG 59 Novel Rattus norvegicus 81 AC120246.3 ENSRNOG00000055053 ENSRNOT00000079465 3 1 1 86 19 25839661 25839679 CAAGTGGACCAGAGTTCCA 59 25839730 25839750 GCTTTCAGTATGTCCTGGTG 59 Novel Rattus norvegicus 81 AC095267.3 ENSRNOG00000060839 ENSRNOT00000083949 1 1 1 94 X 156228622 156228811 TAGTATCCTGGCCGTTAGG 58 156228869 156228887 TTCTCATCACCAGGGAGAG 58 Novel Rattus norvegicus 81 AABR07003944.1 ENSRNOG00000057110 ENSRNOT00000083396 3 1 1 82 1 121471313 121471533 GGGACCACAGAAATAGCAG 58 121471249 121471267 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 AC096370.2 ENSRNOG00000060047 ENSRNOT00000091116 3 1 1 80 1 259648110 259649756 CCATACAGCTGGTAAACACC 59 259648049 259648067 CTCGAGGGATGATCAGGTC 59 Novel Rattus norvegicus 81 AABR07061345.1 ENSRNOG00000056962 ENSRNOT00000088557 2 1 1 94 4 117789844 117790303 GTGTAGTAGCGGGACTCAG 59 117789768 117789788 TCGCAGATGTGATAAGAAACC 59 Novel InUTR Rattus norvegicus 81 AABR07065768.2 ENSRNOG00000054688 ENSRNOT00000086301 3 1 1 127 6 140418652 140418671 CATTTAAATCCCGACTGAGC 57 140416677 140418562 CTCCCATTTCCTCACTGTG 58 Novel Rattus norvegicus 81 AABR07043347.1 ENSRNOG00000051410 ENSRNOT00000074702 3 1 1 60 19 27603687 27603706 AAAGAAGAGACAAGGAGCTG 58 27603726 27603747 CTCTCCCATCTCTTGTATTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015674.1 ENSRNOG00000059284 ENSRNOT00000084502 2 1 1 88 14 69510055 69510074 CGGTCGAGATCAAGAAAGGA 60 69509980 69510003 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 AABR07015674.1 ENSRNOG00000059284 ENSRNOT00000084502 3 1 1 89 14 69510055 69510074 CGGTCGAGATCAAGAAAGGA 60 69509979 69510002 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058979 ENSRNOT00000086113 1 1 1 60 7 711763 711783 CTAGCTGCGAGAATTAATGTG 57 711723 711741 AGTGCGTTCATAGTGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058979 ENSRNOT00000086113 3 1 1 60 7 711724 711742 ATGGACACTATGAACGCAC 58 711682 711701 CTCTCAGATAGCTGTAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130162.1 ENSRNOG00000034030 ENSRNOT00000049830 3 1 1 80 16 49396365 49396644 CCTTTCTCTTAGGCAACCA 57 49397321 49397339 AGGGAGTATTTGATCGGGT 58 Novel Rattus norvegicus 81 Xlr4a ENSRNOG00000055822 ENSRNOT00000091365 3 1 1 80 X 153079227 153079245 ATCTGGCCTTTGAAACTGG 58 153077617 153079185 AAGATTTCTTACTAGGCCCTG 57 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058080 ENSRNOT00000085998 1 1 1 60 7 2221841 2221860 GACATTTCGAAAGCACTTGC 59 2221800 2221820 AGACTATCAGACAGGTGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000057766 ENSRNOT00000084504 1 1 1 60 7 140922102 140922120 GTAATGGCTGCAAACAGCA 60 140922060 140922079 TAACCCACATAGGTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054645 ENSRNOT00000080789 3 1 1 60 11 49046060 49046080 AGTTTAGCTATGAACCCTGTG 58 49046101 49046120 ATCATTTGAACGCTGTACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046699.1 ENSRNOG00000049217 ENSRNOT00000051988 3 1 1 114 5 2177267 2177288 TTGGACCAGAGAAACACCTC 60 2177172 2177196 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AC135901.1 ENSRNOG00000054640 ENSRNOT00000086148 1 1 1 80 5 154103440 154103458 AGGAGTCTCTACAGAGCCT 59 154103498 154103522 GGCTTCTATCATCAAAGAGAAGG 59 Novel Rattus norvegicus 81 AABR07055482.1 ENSRNOG00000048108 ENSRNOT00000072656 3 1 1 82 7 4048014 4048081 ACCTGTTCTTACATCAACCC 58 4048125 4048144 GGAGCAATTGATGTCATCAG 57 Novel Rattus norvegicus 81 AABR07009377.1 ENSRNOG00000055011 ENSRNOT00000087889 1 1 1 66 2 94960470 94960490 GAAGTGATGGCGTTGATGG 59 94960520 94960538 CACCAACAATCCCAACTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07068417.2 ENSRNOG00000048666 ENSRNOT00000072142 1 1 1 60 9 104325110 104325128 TGGAACTCACCCTGTAGAC 58 104325152 104325170 GGAGGTAGAGACAGGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045242 ENSRNOT00000070509 1 1 1 60 4 39094494 39094514 GATCTCAGAAGCTAAGCAAGG 59 39094533 39094554 TTCCCAAACAATTTACCATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061585 ENSRNOT00000083060 1 1 1 60 4 80302880 80302899 GAAGCTGTGTCTATGCTCAG 59 80302839 80302860 TGTTAGGTTACCCATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066826.1 ENSRNOG00000039790 ENSRNOT00000061048 1 1 1 80 9 17944188 17946115 GAGAGTGTCAGCAGAATCTG 58 17944123 17944144 AACTGTAAAGGTATACTGCTGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000058466 ENSRNOT00000090935 1 1 1 60 11 52753787 52753808 GATACAGAGAAGACTAGCATGG 58 52753829 52753847 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055047 ENSRNOT00000085051 3 1 1 60 9 31651485 31651508 TGATGTAGAGATTAGCTTGGTCTC 60 31651526 31651545 TGGAGCACATCTCAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024716.1 ENSRNOG00000057312 ENSRNOT00000077763 1 1 1 87 16 12510996 12511146 CAGACAAGGATGAGAATGATTCTG 60 12511192 12511210 AGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050366 ENSRNOT00000072740 2 1 1 60 7 116076540 116076558 CTACAGCGATACCACACTG 58 116076498 116076517 AGCTCTGTTTAGCTTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057448 ENSRNOT00000083733 1 1 1 60 7 3870034 3870053 TCAAAGAGGACAACCTTCCA 59 3869993 3870011 ACTCCTACACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048338 ENSRNOT00000062639 1 1 1 60 9 30067749 30067767 CCCAATCTCGTCTGATCTC 57 30067790 30067809 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056857 ENSRNOT00000078728 3 1 1 63 7 116793261 116793279 GTGTCAGTAGGTGGCAGAG 60 116793305 116793324 GATGTCAGAGGTCAGAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU89 ENSRNOG00000052563 ENSRNOT00000084518 3 1 1 60 4 157233727 157233746 AGATCTGGAATCTTGGCAGG 60 157233769 157233787 ATTGATCTGGCCTTACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057412.1 ENSRNOG00000050895 ENSRNOT00000074506 3 1 1 63 7 70020530 70020550 TAGTATTGGCCTTGGAGTCAG 59 70020487 70020505 CATGCATATTGGACGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027754.1 ENSRNOG00000053374 ENSRNOT00000078962 3 1 1 65 17 43835442 43835462 ATGGACTTGAAATCCATTGGG 59 43835397 43835415 AACATAAGCACGTAGTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054599 ENSRNOT00000085128 2 1 1 60 7 78697933 78697955 CGGTGATGGTGTTCTTATATCAG 59 78697973 78697993 TCAGATAAACAAAGGACTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000028767 ENSRNOT00000033187 3 1 1 80 1 62191040 62191229 GACATTACAGCATCCACATAGG 59 62190981 62190999 TCAGATGGTATTTCCGGGT 58 Novel Rattus norvegicus 81 AABR07067042.2 ENSRNOG00000048697 ENSRNOT00000073490 3 1 1 82 9 27589344 27589362 GAAATGCCTCCATGAGACC 58 27589280 27589298 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054913 ENSRNOT00000084519 2 1 1 60 4 93769416 93769436 TTGCAGGTATGTCAGTAGGAG 59 93769376 93769394 TCAGTGAGCTGAGCATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051731.1 ENSRNOG00000053899 ENSRNOT00000088492 1 1 1 80 3 20375740 20375891 GCTTACAGGTGGTAAATGTGAC 60 20375929 20375950 ATGGTGACAATTTCTTCCAGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059708 ENSRNOT00000084832 3 1 1 84 4 67043334 67043352 GTGCTCAATTTGGCAACAC 59 67043268 67043286 ATGTTTGTGTCACCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068674.1 ENSRNOG00000057758 ENSRNOT00000085481 2 1 1 83 9 114324846 114326789 GAACTAACTTTGTCACCTAAGACC 60 114324786 114324806 AATCTCACTGGCATTAAACCC 59 Novel Rattus norvegicus 81 AABR07005939.1 ENSRNOG00000054593 ENSRNOT00000078318 3 1 1 80 1 207639359 207639381 TGGTTTACCTGGGAAGACAG 59 207639422 207639442 ATCGCATTAAATCACAGCCTC 59 Novel Rattus norvegicus 81 AABR07067457.1 ENSRNOG00000032108 ENSRNOT00000051231 3 1 1 60 9 46951725 46951743 GGTGAAGAAACCTCATCGT 58 46951683 46951702 ATAGCATCTGGTTTCACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000073764,ENSRNOT00000064626 2 2 2 67 10 87819559 87819578 ACTTGCTGTGAAACAAGCTG 60 87819608 87819626 CTGCAGCCAATGATCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058213 ENSRNOT00000079343 2 1 1 60 8 49368991 49369010 CCTCTGTGGGAAAGAAACTG 59 49368950 49368974 CTCTTTCTATGTGGCTAAGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 3 1 1 68 2 209779347 209779366 TCAGAGATACGTTGCCACC 60 209779397 209779416 ATATGAAGGGTAGCCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004297.1 ENSRNOG00000060667 ENSRNOT00000090236 1 1 1 62 1 136075099 136075117 CACCTAGACTTGGTGTGGT 59 136075142 136075162 AATTTAGGCAGAAGGTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07067355.1 ENSRNOG00000057235 ENSRNOT00000086189 3 1 1 60 9 41208431 41208449 TAGCAGTAAGGCAGGAAGG 59 41208471 41208491 GATTCTAGAAGACAGTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014301.2 ENSRNOG00000050982 ENSRNOT00000074231 1 1 1 64 14 8149932 8149951 AGAGAATTGCCAGAGAAGGA 59 8149886 8149904 TTCAGGATTGAGGTGGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001435.1 ENSRNOG00000004144 ENSRNOT00000058849 3 1 1 86 1 43933722 43933744 AAGTCGGTAGAGGTGAAGC 59 43933654 43933675 GTCTATTTCCTTTCCAGTGCTG 59 Novel Rattus norvegicus 81 AABR07054167.1 ENSRNOG00000058400 ENSRNOT00000088666 1 1 1 80 3 143645289 143646072 CCTATTACATAAAGCGGACTCCT 60 143645231 143645250 ATAGGAGCTTCCTGCATCTG 59 Novel Rattus norvegicus 81 AABR07040393.1 ENSRNOG00000050970 ENSRNOT00000075783 1 1 1 60 X 99389390 99389411 ATGAGTCCAAACAAATGGTCTG 59 99389431 99389450 GTACAACCGAGTTCTCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058192.1 ENSRNOG00000057662 ENSRNOT00000088526 2 1 1 80 7 104197223 104197246 GAGATTTCACCTCACATGCG 59 104197288 104197307 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AC123425.1 ENSRNOG00000059703 ENSRNOT00000080546 2 1 1 127 12 46718802 46718820 TCCTTCTGCCTCAGTTTCC 59 46718916 46718934 CAATCCCTGCAAACTTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000045084 ENSRNOT00000070351 3 1 1 62 3 60364181 60364199 TCTTGTCCATCTCGGAAGC 60 60364222 60364243 GAACTTCATTTCCATCCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054460.1 ENSRNOG00000048284 ENSRNOT00000072710 1 1 1 60 3 154868922 154868940 TGTAATCTTGGCTGTCCTG 57 154868880 154868900 GAATCTTTGAGTTAGAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059242 ENSRNOT00000084943 3 1 1 60 13 7096402 7096421 TCCCTAAAGGCATTATGGGT 59 7096361 7096379 CTTCCTGCCACCTAGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.4 ENSRNOG00000059412 ENSRNOT00000082045 1 1 1 60 X 123807195 123807216 CTAAACAGAAGACAAACTACGG 57 123807236 123807255 AGACCCTCAGGTTCATTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000051521 ENSRNOT00000083265 1 1 1 64 8 13870805 13870823 ATTTGCTGTGGACATGACC 59 13870849 13870869 GCTACTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025900.1 ENSRNOG00000049606 ENSRNOT00000074244 1 1 1 79 16 54608583 54608604 CCAAAGCAAACACTGAATATCC 58 54608648 54608666 GTCTTCCAGCATCATGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030254.1 ENSRNOG00000052096 ENSRNOT00000079364 3 1 1 107 10 78112876 78173853 TGTTAGGCCTAGAGTGCTG 59 78173924 78173942 AATGCTAGCTTAGCCAGCA 60 Novel InUTR Rattus norvegicus 81 AABR07002779.1 ENSRNOG00000054614 ENSRNOT00000078369 1 1 1 60 1 84793062 84793080 AGAGAAATCGGAAGGAGGG 59 84793020 84793038 TGCTCTTCCTCTGTTGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060155 ENSRNOT00000085774 3 1 1 60 8 17657251 17657269 CCTTTCTCCCTCACCACTC 59 17657290 17657311 TACTCTTCGACCTAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070952.1 ENSRNOG00000051779 ENSRNOT00000079911 3 1 1 60 8 93161214 93161235 TCTCACAGAACTTGACTTTGGA 60 93161175 93161194 CAGAAGAATCCAAACCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051411 ENSRNOT00000077608 1 1 1 60 8 70362859 70362878 TGTGTATCAGTAGGTGGCAG 59 70362818 70362836 CACAAGTCAGAACCCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073400.1 ENSRNOG00000059084 ENSRNOT00000088997 3 1 1 84 8 50539067 50539280 GACAGACAGGTTCTTCTCC 57 50539001 50539019 GATGGAGAAGTTCAGGCAG 58 Novel Rattus norvegicus 81 AC141517.1 ENSRNOG00000057297 ENSRNOT00000086156 2 1 1 80 1 72966512 72966535 GAGATTTCACCTCACATGCG 59 72966451 72966470 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07008255.1 ENSRNOG00000054421 ENSRNOT00000085374 1 1 1 156 2 49682760 49682778 GTACACTTGCTGGTAACCG 59 49682620 49682638 TAATTGATGGAGGGTTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 1 1 1 60 2 35185905 35185926 CTTCTGTTCCTGAGCATCG 58 35185950 35185968 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026359.1 ENSRNOG00000060898 ENSRNOT00000088219 1 1 1 80 16 73758562 73759369 ATCACAATTACTGCAGAAACCC 59 73759409 73759428 ACTCCGTGGTATACTTCCCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000061067 ENSRNOT00000092135 3 1 1 60 3 161229461 161229480 TTCTGGTCAGAGGTACACAG 59 161229501 161229521 TCTGAGAGCTTATTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024907.1 ENSRNOG00000051631 ENSRNOT00000091071 2 1 1 60 16 21768011 21768031 CAAGGTCCGCTATACTAACAG 58 21767971 21767989 AATTTCAGGTGCAGTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031164.1 ENSRNOG00000055448 ENSRNOT00000089998 2 1 1 80 18 2501694 2511002 AGCACAAGGCATCTATCCT 59 2501632 2501651 CCCAGGATCAGAAGTAAGCA 59 Novel Rattus norvegicus 81 AABR07046732.1 ENSRNOG00000058240 ENSRNOT00000079313 2 1 1 94 5 3951133 3951152 TTAAGTGAACTGGTAGCTGG 57 3945649 3951077 ATGTTCCTGCAAGATCTCAC 58 Novel Rattus norvegicus 81 AABR07031380.1 ENSRNOG00000058674 ENSRNOT00000090177 2 1 1 103 18 11722022 11723830 GAAAGAGAAGCCAAGGCAC 59 11723897 11723915 CCTACCTGCCCTTTCTGAG 60 Novel Rattus norvegicus 81 AABR07062756.1 ENSRNOG00000054819 ENSRNOT00000086518 3 1 1 120 6 6386506 6390990 ACTCTCCTCAGAGGACCAG 60 6391074 6391092 CTCGGTGTGGATTGGAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07000200.1 ENSRNOG00000053182 ENSRNOT00000087887 2 1 1 81 1 4356403 4356421 GAGCTGGACTACTGTGGAC 60 4328368 4356362 CTTGTTCTTTGTCTCTAGACTGC 60 Novel Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 1 1 1 60 14 58282730 58289710 TTCAGCGACATGGAAAGGT 60 58289731 58289752 GATATAAATTCAGTGGCCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029768.2 ENSRNOG00000055459 ENSRNOT00000085491 3 1 1 87 10 49335103 49335123 GAATGAACCGGAATGAACAGG 60 49333875 49335054 TGTGACCTGATGTCACCAC 60 Novel Rattus norvegicus 81 AABR07060743.1 ENSRNOG00000051546 ENSRNOT00000088444 3 1 1 81 4 92104690 92108357 CCTGTCAGAGGAAGAACGT 59 92104627 92104648 TTTCCATCTCTAATCTCTGCCT 59 Novel Rattus norvegicus 81 AABR07047194.1 ENSRNOG00000058576 ENSRNOT00000081862 1 1 1 80 5 23391927 23391945 GTCGAAACAGTCTGTTGCA 59 23391989 23392610 TGACCAGACGTCTTTGACC 60 Novel Rattus norvegicus 81 AABR07015647.1 ENSRNOG00000059908 ENSRNOT00000091793 1 1 1 183 14 68607717 68607740 CCTCAATGATAATGGGCTTTAGTG 60 68600354 68600373 GCCATACAGACAGGTTACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060920.1 ENSRNOG00000054587 ENSRNOT00000090082 2 1 1 82 4 100861391 100862288 CTAACACTATGCACTGCCT 57 100861327 100861345 CATTTGATGGAATGCTGGG 57 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 2 1 1 60 5 38572346 38572366 CATCAACATTGAAGTGTGCTC 58 38567864 38572326 ATGACTTCCAGTAGTTCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000085786 3 1 2 83 1 14938551 14949523 CAGAATTCAAGCATGCAATGG 59 14949568 14949586 ACACGTAGGTTGAGATCCA 58 Novel Rattus norvegicus 81 AABR07048010.1 ENSRNOG00000057330 ENSRNOT00000091600 1 1 1 80 5 56684245 56684877 CCCTTTCTAAAGATAACACAGC 57 56684915 56684936 TGTTGTCATATACTCTTAGGGC 58 Novel Rattus norvegicus 81 AC108312.2 ENSRNOG00000061022 ENSRNOT00000082693 2 1 1 81 14 80468243 80474175 TGTCTCCACAGGTTTCCAG 59 80468180 80468203 CTTATCTGACTAATCCAAGTTCCC 59 Novel Rattus norvegicus 81 AABR07015917.1 ENSRNOG00000052037 ENSRNOT00000083054 3 1 1 81 14 86100199 86100217 GATGGATGCTAGGGTTGAC 58 86100259 86100578 GAGAGTACATCTCAGTGTATGC 58 Novel Rattus norvegicus 81 AABR07048322.1 ENSRNOG00000059020 ENSRNOT00000081402 1 1 1 80 5 73297557 73326543 CCAGACAATGGAGATGCCT 60 73297495 73297515 CCTGATCTCTTTCTTTGCAGG 59 Novel Rattus norvegicus 81 AABR07030482.1 ENSRNOG00000053646 ENSRNOT00000085625 3 1 1 81 10 89777863 89778357 CATTGAAGGGTTTACTCCAGC 59 89778398 89778418 TAACCTGACGGTTACTTGGTC 60 Novel Rattus norvegicus 81 AC098180.1 ENSRNOG00000061271 ENSRNOT00000079772 1 1 1 82 14 100131852 100133751 TCTTGGACAGGTTGGAAGAC 60 100131789 100131813 GGAGCACTTTGTAATATACTGAGAC 60 Novel Rattus norvegicus 81 AABR07048478.1 ENSRNOG00000060139 ENSRNOT00000090293 2 1 1 80 5 77979857 77979879 GATCGATAGATCCTGTTATGGAG 58 77978891 77979821 CTCTTCTTAGTTCACTTGAGACC 59 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 3 1 1 68 14 104764531 104768599 GGTGTTCTGCAAGCATCTC 59 104768631 104768649 AGTTACCTGTAAGACGGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000082506 2 1 2 127 10 93203369 93204402 CAAACTCTTCACAGGCCAG 59 93204493 93204511 GATGCTTACCATCCACTGG 58 Novel Rattus norvegicus 81 AABR07001018.1 ENSRNOG00000053323 ENSRNOT00000089213 2 1 1 80 1 33794840 33794858 CAGGCATTGACTAAGCCTG 59 33794897 33796999 CTGTAGGCAATTCTTAGATTCGAG 60 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000077705 2 1 2 80 4 157752863 157752886 CCTAACGAAGACAGATATGAAGTG 59 157752923 157753753 GGATATCTTCATTCCTGCCCA 60 Novel Rattus norvegicus 81 AABR07030832.1 ENSRNOG00000055043 ENSRNOT00000077850 1 1 1 91 10 105426368 105426386 TGATGGAGAAACCTGAGCC 59 105426177 105426313 ATCGGTGATCTTGGTCAGG 59 Novel Rattus norvegicus 81 AC093960.1 ENSRNOG00000061275 ENSRNOT00000088076 3 1 1 63 15 18745548 18745566 GAACTATGGCTGGCATGTG 59 18742940 18742958 AATTCTGGCATGAGTTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC103692434 ENSRNOG00000058853 ENSRNOT00000083620 2 1 1 80 5 126222804 126222822 TAAGTCCTGCATCCAACCC 59 126222865 126223547 AAGGAGATCACTTGGTGAGG 59 Novel Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 3 1 1 62 4 170077450 170077469 GAGAAAGTACTCGGGAACCC 60 170075684 170077425 AAACGACTGAGAGTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045658.1 ENSRNOG00000055472 ENSRNOT00000086208 2 1 1 81 20 55722621 55724620 GCCTTTGGAGACCAAAGAG 59 55729665 55729684 TGGTGAGAAACACTCATCAG 58 Novel Rattus norvegicus 81 AABR07017506.1 ENSRNOG00000052920 ENSRNOT00000084371 1 1 1 81 15 24379138 24379157 CATTTCACCTCCCAGTTTCC 59 24379200 24379407 AGATCATCAAGCCCTCTGTC 59 Novel Rattus norvegicus 81 AABR07017512.1 ENSRNOG00000059064 ENSRNOT00000081480 2 1 1 85 15 24746951 24748750 ATACAAACGAGGAACTGGG 57 24746884 24746902 AAAGATACCGTGCCATGTC 58 Novel Rattus norvegicus 81 AABR07001444.1 ENSRNOG00000057561 ENSRNOT00000086762 3 1 1 83 1 44201798 44227777 AGGTGGAGGGACTAGAGAC 59 44227822 44227842 GAATGATCAGATGCCAATGGG 60 Novel Rattus norvegicus 81 AABR07017540.1 ENSRNOG00000058949 ENSRNOT00000086339 2 1 1 80 15 26257436 26264489 ATGTCAAGGAACATGGAAGG 58 26264530 26264550 AGGTTAAGCTTGTGTTCTCTG 58 Novel Rattus norvegicus 81 AABR07031537.1 ENSRNOG00000055852 ENSRNOT00000087406 2 1 1 80 18 19071451 19071470 CCTAGGGATGATCACAAGCA 59 19067217 19071410 CCTAGATGTCCATACCTGGAG 59 Novel Rattus norvegicus 81 AABR07049688.1 ENSRNOG00000052085 ENSRNOT00000083808 2 1 1 92 5 133151606 133159553 AAGGGAAGAGATCTTTCTGTCC 60 133151535 133151553 GCATTCCAGCATCCTAGGA 59 Novel Rattus norvegicus 81 AABR07031604.1 ENSRNOG00000051421 ENSRNOT00000090746 1 1 1 80 18 21896652 21915012 CTAAGACTGAGCACCAGCT 59 21915056 21915074 AATAGAGGTGGGTGTCAGC 59 Novel Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 1 1 1 60 4 181524202 181524895 GCCAGAACCTCTACATCCA 59 181524160 181524178 TCACAGTTCTTGTAGTGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017768.5 ENSRNOG00000059044 ENSRNOT00000085722 2 1 1 82 15 30790054 30790296 GCTTTGTCTGGATTTAATGTGG 58 30790338 30790357 TATGAACAGTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07049783.2 ENSRNOG00000057360 ENSRNOT00000089945 3 1 1 93 5 137659952 137659970 GTCAAACCTCGTCTACTGG 58 137658190 137659896 GATGCTAACCTGGTAGATGG 58 Novel Rattus norvegicus 81 AC114389.2 ENSRNOG00000056441 ENSRNOT00000087503 3 1 1 87 1 48267905 48267925 ACACAAATTCCATGTGAGTGC 60 48266295 48267856 GTTTCAGAAGCTGCCTTGG 60 Novel Rattus norvegicus 81 AABR07017818.1 ENSRNOG00000051907 ENSRNOT00000082274 3 1 1 82 15 31351917 31351937 AGACCACTTTCTAGATGACAC 57 31351981 31352106 ATGAGTCCTTCCGAGTAGG 58 Novel Rattus norvegicus 81 AABR07031724.1 ENSRNOG00000061564 ENSRNOT00000087492 1 1 1 75 18 29732435 29732456 GTTCTAACAGGATACCATTGCT 58 29724901 29724919 TTCTCCCAGATCCTCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 1 2 2 80 5 142406975 142406993 GCCATACAGACATCACCGT 60 142405995 142406931 TGTGCTGGTCTGTGATAGG 59 Novel Rattus norvegicus 81 AABR07062915.1 ENSRNOG00000056572 ENSRNOT00000077527 1 1 1 80 6 14598347 14599307 CTACTCCCATTGTACAGAAACC 59 14599348 14599366 CCATACTTGGAACATGCGA 58 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 1 1 1 63 5 143851531 143851550 GACAGAAGGATCCAGAAGAC 57 143851576 143852413 TACTGGTAAGGCAGTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001619.1 ENSRNOG00000053004 ENSRNOT00000088831 3 1 1 108 1 54297911 54300406 CCTGGAAAGTTCATCCACAG 59 54300477 54300495 CTCCTCAGTGTCCACTAGC 59 Novel Rattus norvegicus 81 AABR07072591.1 ENSRNOG00000056586 ENSRNOT00000090562 1 1 1 81 18 47339782 47350541 CAAGAAAGGTGGCTGTGTC 59 47339719 47339740 GAAGATGTAGTTGTCCATGGAG 59 Novel Rattus norvegicus 81 AABR07050057.1 ENSRNOG00000061203 ENSRNOT00000086977 1 1 1 95 5 149430857 149430876 TCAGCTTACAGTTCTGTCCT 58 149421118 149421136 GACTGAGACAGGAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07050061.1 ENSRNOG00000058693 ENSRNOT00000077103 2 1 1 82 5 149707902 149707920 ATTCCTGTTGGGCTCAGTC 60 149666787 149707857 CCTTTCTCCACCTCTACAGG 59 Novel Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 3 1 1 77 1 56541447 56541465 AAAGATTCTCGGCTCACCT 59 56539474 56541406 AAACTATGACTTCTGCCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001799.1 ENSRNOG00000052286 ENSRNOT00000084574 3 1 1 80 1 57999561 58094546 GGCTTAAAGAATCCCTTCTAGG 58 58094586 58094605 TAAGCTGATTGGCACTTGTC 59 Novel Rattus norvegicus 81 AC105604.1 ENSRNOG00000061285 ENSRNOT00000086938 1 1 1 89 18 52593721 52593739 TATTGGAAGTCGATGGCTG 57 52593792 52600082 GTCTCCATTGCATAAGCGA 58 Novel Rattus norvegicus 81 AABR07018262.1 ENSRNOG00000052442 ENSRNOT00000088926 3 1 1 80 15 49535971 49537409 TATTTCCTTGGACCGAATGC 58 49535910 49535929 CGACATTTCCACTCTTACCA 58 Novel Rattus norvegicus 81 AABR07050288.1 ENSRNOG00000057085 ENSRNOT00000084042 2 1 1 96 5 159805227 159805245 ACAGCTACATGAACTTGCC 58 159805305 159808018 TGTAGTGAGATCCTTGCGA 58 Novel Rattus norvegicus 81 AABR07063642.1 ENSRNOG00000059067 ENSRNOT00000088515 2 1 1 98 6 39128153 39128172 AATGTCTGGGAATGGTTTGG 59 39128232 39134838 CAAAGGTACCTGGCTTATCC 58 Novel Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 2 1 1 61 6 39679926 39679947 AACTATCCAGCATCTAGAAGAG 57 39679969 39692702 AATGGCATGCAGTTCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032261.2 ENSRNOG00000051724 ENSRNOT00000084329 2 1 1 80 18 57572581 57572601 GTTTGTTGGTTCATATGGCCA 60 57553173 57572540 AGGATCATCGAGGGTTTGTG 60 Novel Rattus norvegicus 81 AABR07063674.1 ENSRNOG00000058570 ENSRNOT00000085751 3 1 1 89 6 41275315 41275333 ATGACGACTTCTGCAACAC 59 41275383 41275904 CTTTGTTCTTCCTTGTGAATCC 58 Novel Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028 1 1 2 92 5 167081201 167081219 GTCTCTGTGAAGGGATCCC 59 167084932 167084950 CATAGTCAGGCTTCTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063740.2 ENSRNOG00000057022 ENSRNOT00000091112 1 1 2 80 6 44732825 44732843 CTTGGTTTGCTCCATGCTC 60 44732884 44733616 TCAACGTTGATATCCTGAATCG 59 Novel Rattus norvegicus 81 AABR07032520.2 ENSRNOG00000052705 ENSRNOT00000082939 1 1 1 106 18 69876151 69879800 TTGGAAAGACTGAGCAGAG 57 69876063 69876081 CTTCTCCAAACCTCTGAGC 58 Novel Rattus norvegicus 81 AABR07051250.2 ENSRNOG00000061542 ENSRNOT00000090507 1 1 1 86 3 3492161 3492179 TTGAGACAGACCACAGCAG 60 3489163 3489181 TTCTTCTGAGCTCCAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102548225 ENSRNOG00000053223 ENSRNOT00000084356 1 1 1 60 18 71885837 71885856 AACTTTGGCCGATTTCTGTG 60 71886821 71886839 CTCAACCAGTGTGAGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032582.2 ENSRNOG00000055139 ENSRNOT00000088233 2 1 1 80 18 72650659 72650678 AACATGCTGTAGCTACTCCT 59 72650719 72651967 AAGTTCAAAGAGACCCATCTG 58 Novel Rattus norvegicus 81 AABR07051255.1 ENSRNOG00000058226 ENSRNOT00000088512 3 1 1 81 3 4153823 4154294 CCCTAATGTGGATTGCAGG 58 4154339 4154357 CAGGCTGTGTATTTGGCAG 59 Novel Rattus norvegicus 81 AABR07019162.1 ENSRNOG00000059860 ENSRNOT00000084495 2 1 1 95 15 91810959 91810977 GAAATCCCAGAGACAAGCA 58 91811034 91818932 GTTCTGATAACTTCCTGTGGT 58 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000088090,ENSRNOT00000080938 2 2 2 94 15 98619330 98619348 ATAACTGTAGCTTGCGAGC 58 98620276 98620294 GCACAACTCTGCATAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019387.1 ENSRNOG00000056606 ENSRNOT00000091078 3 1 1 81 15 103505130 103505507 ATCTAGAAACTCAAGGTACCCT 58 103505549 103505567 TCTTTCAGTCAACTGGGTG 57 Novel Rattus norvegicus 81 AABR07064584.1 ENSRNOG00000056792 ENSRNOT00000085837 3 1 1 64 6 86022850 86022868 AACTGAGAGTAGACTGCCT 57 86020058 86020078 TCAATATTCTCATCTCCGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 1 1 1 86 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14433622 14434665 TTCATTGGCTGAAGTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 3 1 1 91 3 14433549 14433567 CAGAAGCCGATTCATTCGC 60 14433622 14434665 TTCATTGGCTGAAGTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032834.1 ENSRNOG00000057899 ENSRNOT00000088704 3 1 1 80 18 85067889 85067908 ATCAGGGATCTTCTGACACC 59 85003634 85067848 TTTATCTGTGATCTCCTGCCC 60 Novel Rattus norvegicus 81 AABR07032843.1 ENSRNOG00000057359 ENSRNOT00000088232 1 1 1 89 18 85642500 85642521 GACAAACATCTTCTGTGTTCTC 58 85642568 85643904 CAATATGCATATTTCCCTGTCC 57 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 2 1 1 62 18 85814356 85816847 GTACTATACATATGTACCTGGGCA 60 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 3 1 1 61 15 105845864 105849404 ACATAGACATAGACATGAACGC 59 105849426 105849444 TTCATGGACGTTTGGTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.2 ENSRNOG00000061836 ENSRNOT00000085091 3 1 1 80 3 21442535 21442553 ACAAGGAAATGGTCCTGGG 60 21441770 21442493 CTTCTGAGCAAACTCTTCTCC 59 Novel Rattus norvegicus 81 AABR07065044.1 ENSRNOG00000052650 ENSRNOT00000091878 3 1 1 109 6 105553945 105564148 GAGAAGAATCCAGGCATGTG 59 105564220 105564238 CAAAGTCTCAGTGCCACAG 59 Novel Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 1 1 1 60 6 110258882 110258901 CCAACACTTCACAGAAACGG 60 110258329 110258859 AGGGACCCAGAATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.3 ENSRNOG00000060921 ENSRNOT00000087637 2 1 1 80 3 30297851 30297870 TGGAGGAGAGGATTTCTGTC 59 30297910 30300516 GAGATCTCTTGGAAACTTTCCA 58 Novel Rattus norvegicus 81 AABR07033688.1 ENSRNOG00000061175 ENSRNOT00000091641 1 1 1 80 11 35327112 35327131 CCCAAGTCCATCATCTTCCA 60 35326021 35327071 ATTTCCATCCTTTCAATGGGC 59 Novel Rattus norvegicus 81 AABR07033697.2 ENSRNOG00000056122 ENSRNOT00000083241 2 1 1 118 11 35618886 35618904 GTTTACTGCTGTGTCACCA 58 35608237 35608255 TACTGTGTCCACGTTCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020990.1 ENSRNOG00000057117 ENSRNOT00000087989 1 1 1 73 13 51336890 51336908 CTCTCATTAGGCAAGCGGT 60 51335772 51335790 TTCAAGTGTCCGAGTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC141136.1 ENSRNOG00000052394 ENSRNOT00000083923 3 1 1 82 11 43028696 43029958 CACACTCACCAGGAATCTG 58 43030003 43030022 AATCATGCTCCAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07052458.1 ENSRNOG00000058327 ENSRNOT00000092139 1 1 1 84 3 55021884 55024751 GAGAAGTTCTTAAATGGTCTGC 58 55021821 55021841 GTAGCAATGCATCAAGTTCAG 58 Novel Rattus norvegicus 81 AABR07052502.1 ENSRNOG00000051686 ENSRNOT00000083298 2 1 1 99 3 58269479 58269498 CCCAGGAGATGAGTTGAGAG 59 58269559 58271372 TATTCTGAGAGCTGACTGGC 59 Novel Rattus norvegicus 81 AABR07052502.1 ENSRNOG00000051686 ENSRNOT00000083298 3 1 1 100 3 58269479 58269498 CCCAGGAGATGAGTTGAGAG 59 58269559 58271373 ATATTCTGAGAGCTGACTGGC 60 Novel Rattus norvegicus 81 AABR07021465.2 ENSRNOG00000058710 ENSRNOT00000083523 1 1 1 80 13 73868446 73868465 ACATTTGTAGATCAGGTGGC 58 73867932 73868403 AGCGGAAGTATCAACATGG 58 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000086316 1 1 2 80 1 118076227 118076249 TGAAGAAACTGAGACCTAGAAGG 60 118076289 118076988 ACAGTGTAACAAGGCCTCC 60 Novel Rattus norvegicus 81 AABR07021636.1 ENSRNOG00000056222 ENSRNOT00000088180 2 1 1 80 13 83138212 83138233 GGAAACACATTTCACTCTCCTG 60 83130011 83138172 GAAGCCTGAAGTTCCAAGTC 59 Novel Rattus norvegicus 81 AABR07021714.1 ENSRNOG00000059942 ENSRNOT00000089304 2 1 1 96 13 87327812 87327830 ATTATTCCCTCGGGACAGG 59 87322978 87327758 CTAGTATCTTTACTGTTGGATGTGG 59 Novel Rattus norvegicus 81 AABR07021730.1 ENSRNOG00000055968 ENSRNOT00000087825 3 1 1 61 13 88130767 88130788 CTGTGTTCAAGACATTTCACTG 58 88077621 88130750 CTTACTAAGTGTGATACACCATGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07021823.2 ENSRNOG00000060190 ENSRNOT00000079818 3 1 1 151 13 93936988 93937007 CATGGACCTTTCAATTTGCG 58 93936185 93936874 CAGAGGAGTCTTGCAAGGA 59 Novel Rattus norvegicus 81 AABR07065476.1 ENSRNOG00000057859 ENSRNOT00000080761 1 1 1 114 6 130201944 130201962 ACCGCAAAGATCTCCTTCC 60 130202037 130204242 TTCAAAGCACCTTCTTAGAACC 59 Novel Rattus norvegicus 81 AABR07021910.1 ENSRNOG00000058321 ENSRNOT00000086734 2 1 1 80 13 97626794 97626812 CTTAAAGCTGGTGCCAGAG 59 97624059 97626752 CGCATTCTTCCTTAAGGACTC 59 Novel Rattus norvegicus 81 AABR07065566.1 ENSRNOG00000052627 ENSRNOT00000080743 3 1 1 116 6 134718927 134718945 CCATGAGTCTCAATGTCCC 58 134719024 134719228 TAGGGTTGGTTCCCTTATCC 59 Novel Rattus norvegicus 81 AABR07021972.1 ENSRNOG00000061273 ENSRNOT00000080652 2 1 1 118 13 101364915 101371465 GCTTGGGAGGAAACATTCC 59 101371547 101371565 ACAGAGTCTCACTGTGCAG 59 Novel Rattus norvegicus 81 AABR07035005.1 ENSRNOG00000058796 ENSRNOT00000081048 3 1 1 100 12 3134352 3134729 AATCCTATGGAACTTGATGGGT 59 3134790 3134808 TTACCTCCTCCCTCTCCTG 59 Novel Rattus norvegicus 81 AABR07052897.2 ENSRNOG00000056421 ENSRNOT00000083244 2 1 1 81 3 83146337 83146357 TCTGCTAGTCAACTCAAAGGT 59 83146176 83146294 ACTCCAAGGGTTGTCTTGG 60 Novel Rattus norvegicus 81 AABR07004254.1 ENSRNOG00000053587 ENSRNOT00000086737 3 1 1 89 1 134029111 134030285 GGTCTCCATATTCCTATAGGCA 59 134029043 134029061 AAGATGTAGCATGGTGGGT 59 Novel Rattus norvegicus 81 AABR07053118.1 ENSRNOG00000058450 ENSRNOT00000084353 2 1 1 100 3 92139499 92139812 CATAATTGGCATCAAGCAACAG 59 92139872 92139891 ACAGTGATGGAAGGACTGTC 60 Novel Rattus norvegicus 81 AABR07065883.1 ENSRNOG00000052278 ENSRNOT00000081721 3 1 1 80 6 143599304 143605630 AGTAACTGATGGTGTCTACTCC 59 143599245 143599264 AGTTTCACTGAAGACCCAGG 60 Novel Rattus norvegicus 81 AABR07004364.1 ENSRNOG00000060303 ENSRNOT00000086092 3 1 1 83 1 139199159 139199177 TTTGGGCTGTAACTCAGAC 57 139197602 139199113 CTCTTTCTAGGCACTGTCTC 58 Novel Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776,ENSRNOT00000078681 1 2 2 81 6 143749809 143749911 TCCCTGCATATGTCTTGTCC 60 143749747 143749765 GTCAGGCTTAGGGTCTTGG 60 Novel Rattus norvegicus 81 AABR07053437.1 ENSRNOG00000059542 ENSRNOT00000091667 1 1 1 86 3 107017234 107017252 AAACAAGAGCAAGCTGAGC 59 107015467 107017186 TTCCTGTAACAAATGGAAGCC 59 Novel Rattus norvegicus 81 AABR07053481.1 ENSRNOG00000058370 ENSRNOT00000078988 3 1 1 80 3 109582018 109582036 AGATTCGAGGTGGTTCAGC 60 109581534 109581976 GTCACATTGCTCCTGAAACTG 60 Novel Rattus norvegicus 81 AABR07004572.1 ENSRNOG00000054930 ENSRNOT00000084334 2 1 1 84 1 147696947 147696965 TGATTGATCACGGAGAGGA 58 147697013 147697991 ATCTGTTCATCACCAAGGC 58 Novel Rattus norvegicus 81 LOC685564 ENSRNOG00000055239 ENSRNOT00000084235 1 1 1 80 16 13002551 13002570 ATGGACAAGAAACCTGAGGA 59 13002608 13005252 TATGCATACTCAAGTAGGACTCAG 60 Novel Rattus norvegicus 81 AABR07035650.1 ENSRNOG00000061750 ENSRNOT00000087357 1 1 1 92 12 20785584 20832370 AAACAGGAAGGGATCACCC 59 20785510 20785528 CCATGGTGAGAGGTCATGG 60 Novel Rattus norvegicus 81 AC096454.2 ENSRNOG00000053575 ENSRNOT00000090408 2 1 1 89 9 17762358 17762381 AGTGAGACTGATAGATAAAGACCC 59 17756666 17762310 TGCGACAGGCATATACTCC 59 Novel Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 2 1 1 67 3 120257560 120259518 CATCTCATCATTGCTAGACGA 58 120259544 120259565 TCCAGAATGAATAACTCAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035790.1 ENSRNOG00000054574 ENSRNOT00000080074 3 1 1 62 12 22512601 22528104 GAAAGCGACCATGAACTGG 59 22512557 22512578 TGATTCTCAACTTCTGTTGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067006.1 ENSRNOG00000059681 ENSRNOT00000078230 2 1 1 122 9 26061337 26061453 GAGCACCACAGTTAAAGGT 58 26061539 26061557 TTCACAGACATCCATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071969.1 ENSRNOG00000056322 ENSRNOT00000089770 1 1 1 98 1 178596627 178607747 CCTATTCAATTAAACCCACTGC 58 178596550 178596568 TAATAACCAGCAGTTGCCC 58 Novel Rattus norvegicus 81 AABR07035813.1 ENSRNOG00000058330 ENSRNOT00000090379 3 1 1 80 12 23130467 23130486 ATCCATGTGCTGGTTTATGC 59 23130526 23132389 CCTTTAATACCAGCATGCTCAG 60 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000080625 1 1 2 80 16 31172102 31172203 AAAGGATCAGATCAGGTTCC 57 31171900 31171919 CTGGCCCTATTTATCCTCTC 57 Novel Rattus norvegicus 81 AABR07035926.2 ENSRNOG00000060196 ENSRNOT00000085590 3 1 1 72 12 28024990 28025307 GGAATACTGAATGGAAGAATCCAG 59 28024941 28024962 TATTAATGAGCCCAATCAGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025698.1 ENSRNOG00000054658 ENSRNOT00000090945 1 1 1 60 16 46539963 46539981 AAGACCTTGGTTCAAGTCC 57 46539921 46539939 TCCCACTGGATGAAATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067404.1 ENSRNOG00000052867 ENSRNOT00000079214 3 1 1 85 9 43495254 43495277 CCTCTACATCTACTGTATGTTCTC 58 43495318 43495446 AGGATACGCAGTAGATGTAGAG 59 Novel Rattus norvegicus 81 AABR07036080.3 ENSRNOG00000061665 ENSRNOT00000086476 3 1 1 120 12 33693466 33693487 AGACAAAGAGACTGAGACAGAG 59 33693567 33694569 TATGAGCACCATAGGTCCTG 59 Novel Rattus norvegicus 81 AABR07072515.1 ENSRNOG00000061819 ENSRNOT00000084264 3 1 1 62 16 54765149 54765167 CTCTCCTTCCTGCTTCCTC 59 54752475 54765125 GGTCTCTTCCTAGTGACTTGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07054341.1 ENSRNOG00000052433 ENSRNOT00000087730 2 1 1 93 3 148973444 148973462 TCTGAAATTCCAGCTGCCT 59 148973519 148974068 GATCCCAGTCTCGTTGGAG 60 Novel Rattus norvegicus 81 AABR07067462.2 ENSRNOG00000054376 ENSRNOT00000081258 1 1 1 66 9 47335589 47335609 AGGTGTCATCAGACATTACTC 57 47366032 47366050 TCATGAGCAAGACAATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 3 1 1 61 16 58493582 58493600 TCAAACCACCAGAGATGGG 59 58493624 58494261 AGTCCACCATATCTCTGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 2 1 1 61 16 58774474 58777752 GATAGAAGAGTCTGCCCGG 59 58774431 58774449 AACACGTTCTTGCCATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005950.1 ENSRNOG00000059014 ENSRNOT00000085634 2 1 1 91 1 208478507 208478528 ATTCATCCTTCATTTGGGTGAG 59 208478575 208501197 GTGTCAGACCCTTTAATGTTATCC 60 Novel Rattus norvegicus 81 AABR07036514.1 ENSRNOG00000057122 ENSRNOT00000081685 1 1 1 80 12 45941027 45941435 TACAGACCAGAGATTCTTTCCC 59 45941476 45941494 CAGCTTCTCCGTCAGTAGG 60 Novel Rattus norvegicus 81 AABR07054609.1 ENSRNOG00000056512 ENSRNOT00000090601 1 1 1 80 3 163243214 163243234 GAAATGGGTCAGCATTCTGAG 59 163241705 163243172 GTGCCATGAATGAGCATCC 59 Novel Rattus norvegicus 81 AC099449.1 ENSRNOG00000056268 ENSRNOT00000079820 1 1 1 80 1 215969679 215972996 GTCACTTCCTCAGGACTACTG 60 215969619 215969638 TAAGATCGCAGGAAACCCTC 60 Novel Rattus norvegicus 81 AC114391.1 ENSRNOG00000052249 ENSRNOT00000080762 3 1 1 80 16 75649838 75649856 CAGGGATCTTAAGGTGGGC 60 75649900 75663335 GGAGACAGTTCCTCTCAGC 60 Novel Rattus norvegicus 81 AABR07026441.1 ENSRNOG00000055536 ENSRNOT00000085982 2 1 1 95 16 76750241 76750260 GATTGTCAATGCAGGATGAC 57 76719470 76750186 CCAATTCCACCTTAGTAATTGC 58 Novel Rattus norvegicus 81 AABR07026447.1 ENSRNOG00000057882 ENSRNOT00000084958 3 1 1 81 16 77130341 77136770 AGGCATTCAAGGAAAGGAG 57 77130278 77130299 ACACATAAGTGAGGATGATTGG 58 Novel Rattus norvegicus 81 AABR07068044.1 ENSRNOG00000059671 ENSRNOT00000083737 3 1 1 80 9 79357293 79357312 TTAACTGGGTGAAGAGTGGA 58 79357352 79357836 CTTCATGAGACGGTTATCAGAG 59 Novel Rattus norvegicus 81 AABR07072028.1 ENSRNOG00000056436 ENSRNOT00000091800 1 1 1 80 1 226794325 226794343 CTAGGCCAGTGTCAGAACC 60 226794385 226811723 GTGATACATTTCTGGTGTCGC 60 Novel Rattus norvegicus 81 AABR07054855.1 ENSRNOG00000058795 ENSRNOT00000086974 2 1 1 82 3 172371197 172373908 TGGACTCAGACACTGTTCC 59 172371133 172371151 GATTCGTGTTGCTCGATGG 59 Novel Rattus norvegicus 81 AABR07006436.1 ENSRNOG00000058581 ENSRNOT00000085400 3 1 1 80 1 233668475 233669868 ACAAACATGAAAGGCGAGC 60 233668413 233668431 GTGCAACCACAGTAGACAG 59 Novel Rattus norvegicus 81 AABR07026509.1 ENSRNOG00000061179 ENSRNOT00000083285 1 1 1 80 16 79816812 79817084 TCCACCCTCTACCTACAGG 59 79817128 79817146 CCTGGACTGACTATGCAGG 60 Novel Rattus norvegicus 81 AABR07037927.1 ENSRNOG00000054850 ENSRNOT00000087600 3 1 1 155 X 35554535 35554554 AAGATCCTGCAGAAGATTGG 58 35554670 35599133 AAATGAGTCCCTGGAATAGAC 57 Novel Rattus norvegicus 81 AC111257.3 ENSRNOG00000056910 ENSRNOT00000092115 2 1 1 87 16 81082293 81087863 AAAGAATAGGGAGTGTTCGC 58 81082225 81082243 CTTGTCCATAAGAACGGCT 58 Novel Rattus norvegicus 81 AABR07068285.1 ENSRNOG00000060928 ENSRNOT00000079425 1 1 1 81 9 95795107 95795126 CTTGCTTGATGAAGCTAGGC 59 95794702 95795063 CCTCCTTGACGTAAGCCTC 60 Novel Rattus norvegicus 81 AABR07039697.1 ENSRNOG00000058861 ENSRNOT00000087618 1 1 1 80 X 82840088 82845589 AACTTGACTGAATGGGATGTG 59 82840028 82840048 AGGTTATCCTTCTCATTGCCA 59 Novel Rattus norvegicus 81 AABR07006689.1 ENSRNOG00000056566 ENSRNOT00000079361 3 1 1 81 1 248405052 248405070 GAAGCTGAGCTTACAGCAC 59 248405113 248412512 ATTCAAGCAAACTCTGAGCTG 59 Novel Rattus norvegicus 81 AABR07026778.1 ENSRNOG00000061436 ENSRNOT00000078120 2 1 1 125 17 445565 445584 TATCAGACGATTTGTGCACG 59 448744 448762 ACACGTAAGCTTCCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026778.1 ENSRNOG00000061436 ENSRNOT00000078120 3 1 1 126 17 445564 445584 CTATCAGACGATTTGTGCACG 60 448744 448762 ACACGTAAGCTTCCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026936.4 ENSRNOG00000055275 ENSRNOT00000090529 2 1 1 63 17 5694021 5694039 GAAGGAACTCCTGGTCTGG 59 5693040 5693058 AGTGTTCAGCAAGACTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056415.1 ENSRNOG00000057536 ENSRNOT00000085114 1 1 1 80 7 24514478 24528967 CTGGACATTGATGTACCCTG 58 24514417 24514437 CTGAGTGATTCACAATGGAGG 59 Novel Rattus norvegicus 81 AABR07056415.1 ENSRNOG00000057536 ENSRNOT00000085114 2 1 1 80 7 24514480 24528968 GCTGGACATTGATGTACCC 58 24514418 24514437 TGAGTGATTCACAATGGAGG 58 Novel Rattus norvegicus 81 AABR07068612.2 ENSRNOG00000052177 ENSRNOT00000081086 3 1 1 81 9 112125003 112125021 ATGAGTGGAAGAGTCCCTG 58 112121786 112124960 CAAACCAGGTGTGATAAGCTC 59 Novel Rattus norvegicus 81 AABR07026975.1 ENSRNOG00000057274 ENSRNOT00000081536 3 1 1 107 17 8106190 8106209 TGCATGTGGAATTATCACCA 58 8106276 8118119 GGATCTGTCTTTACTAAACCGT 58 Novel Rattus norvegicus 81 AABR07068709.1 ENSRNOG00000056020 ENSRNOT00000087394 1 1 1 60 9 115804355 115804373 CAGGAATCCCACAATCCCA 59 115806172 115806193 AACCAGAATCTTGGGATTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027022.1 ENSRNOG00000057452 ENSRNOT00000081011 1 1 1 77 17 11214306 11214324 AAGTCACTGACTGCATGTG 58 11213966 11213984 TAACACAGAAGCTGCTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068799.1 ENSRNOG00000052844 ENSRNOT00000079914 3 1 1 81 9 119948081 119948894 AATTTGCCAGTGCCATATCAG 59 119948937 119948955 CCCGTAGTTCCAGGATTCC 60 Novel Rattus norvegicus 81 AABR07056576.1 ENSRNOG00000054263 ENSRNOT00000087101 1 1 1 93 7 30507259 30527256 ATCTGCTAAGGCTGTGGAG 59 30527313 30527331 TAAAGATGCAGTCGGTGGA 59 Novel Rattus norvegicus 81 AABR07068949.1 ENSRNOG00000060886 ENSRNOT00000082853 1 1 1 87 8 3074878 3074896 GCTCACTAGCTTGTTTGGT 58 3074944 3096296 TCTTCAGGTGAGTTTATACCTG 57 Novel Rattus norvegicus 81 AABR07027072.1 ENSRNOG00000053171 ENSRNOT00000091031 1 1 1 60 17 13057570 13069338 GTGTTTACTGAGCATGATGGA 59 13057530 13057549 GAGTATGTGGTCCTGATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07072058.1 ENSRNOG00000051500 ENSRNOT00000089252 2 1 1 88 1 262458904 262458923 ATCCGGATTTACTCCAGAGC 59 262432275 262458854 TTCAGGAATCCATCCAGGAG 59 Novel Rattus norvegicus 81 AABR07056624.1 ENSRNOG00000061113 ENSRNOT00000090732 2 1 1 82 7 33244819 33244838 ACTGTCATCCTGTAACCACC 60 33239232 33244774 TTAGGAGTGCAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07006888.2 ENSRNOG00000061256 ENSRNOT00000090950 3 1 1 81 1 262851691 262854136 GAAGCAAAGTGAAGGAGCAC 60 262851629 262851647 GAGTCTCTGATGGCACCAG 60 Novel Rattus norvegicus 81 AABR07027141.1 ENSRNOG00000061738 ENSRNOT00000082199 1 1 1 87 17 15153710 15153730 TGGGCTCTATTTCCTACTGAC 59 15153777 15155508 CTTCACATCCTCTGTGATGTC 59 Novel Rattus norvegicus 81 AABR07027152.1 ENSRNOG00000053097 ENSRNOT00000082420 2 1 1 89 17 16662932 16662950 TAGCCAGTACTGTCCATGG 59 16663000 16665540 CTGGATTTCTCTGTCTCTTCTC 58 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000084754 1 1 2 224 1 264487887 264487905 CATGGGCTCAGAATGTCAC 59 264488417 264488724 AGGAAATCGCTGATTCCGT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07056710.1 ENSRNOG00000055041 ENSRNOT00000092134 3 1 1 102 7 37647158 37647178 CTCCATTCCTGTACTCTTCAC 58 37647240 37647966 AAGAAGACAGCAATCACTCAC 59 Novel Rattus norvegicus 81 AABR07069186.1 ENSRNOG00000060057 ENSRNOT00000077533 3 1 1 80 8 10985848 10986635 AGCTCCAATTATCAGTTTCTCC 58 10986675 10986694 AACTCTGGCTAAGTAGTGGA 58 Novel Rattus norvegicus 81 AABR07069197.1 ENSRNOG00000059516 ENSRNOT00000084249 2 1 1 81 8 11546919 11548906 CCAGCTCAATTCCTAAGATACAG 59 11548945 11548965 TATCCACAAAGCCCATATTCC 58 Novel Rattus norvegicus 81 AABR07042903.2 ENSRNOG00000057776 ENSRNOT00000082870 1 1 1 87 19 14433105 14440457 GAGATCTGAGTCCACAGAAGG 60 14440506 14440524 TCGGAATTGAACGCCTAGG 60 Novel Rattus norvegicus 81 AABR07042999.1 ENSRNOG00000058341 ENSRNOT00000084464 1 1 1 117 19 15844909 15844927 ATCCTTCAGCTTCCTGCAG 60 15845465 15845483 ATGTGAATTCCTCCCGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.2 ENSRNOG00000053722 ENSRNOT00000085478 1 1 1 80 8 12821407 12821425 GGAAATGAGAATCTGCCCG 59 12818420 12821367 GCAGATTCCTCTAACCATATCAC 59 Novel Rattus norvegicus 81 AABR07056858.1 ENSRNOG00000054216 ENSRNOT00000085795 2 1 1 90 7 44144931 44144949 CAGACACCAAGACACAGAC 58 44142165 44144877 CTTGCCTTCCAATGTCCTG 59 Novel Rattus norvegicus 81 AABR07043030.2 ENSRNOG00000058644 ENSRNOT00000087582 1 1 1 92 19 17930223 17930241 GTTAGTCTGAGAGGGCCAC 60 17930294 17939337 GTCGTTTGTCTCTTTGAAACCT 60 Novel Rattus norvegicus 81 LOC102546383 ENSRNOG00000052557 ENSRNOT00000083644 2 1 1 80 17 27390105 27393482 GGATGGTGCTGTCTATTCC 58 27393524 27393544 AAGTTGTAGAGGACTAGAGGA 57 Novel Rattus norvegicus 81 AABR07027394.1 ENSRNOG00000052212 ENSRNOT00000078151 3 1 1 112 17 27991847 27995392 TTAGACAGCACGAGGACTG 59 27991753 27991772 CCAGTTAAGTAGTCCTCGGG 59 Novel Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 3 1 1 61 19 22770761 22775608 CTGCTAACCCTACTCACTG 57 22775633 22775651 GAACTGAAGTCGTCCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057381.1 ENSRNOG00000053077 ENSRNOT00000079124 2 1 1 83 7 68838360 68838378 CTGCCCTGATAGAGGTTCC 59 68837107 68838313 GCCCTTGGTAAAGCTTCTC 59 Novel Rattus norvegicus 81 AABR07027526.1 ENSRNOG00000052525 ENSRNOT00000083869 1 1 1 139 17 35532583 35542282 GATGGATGAGAGCAGGACC 60 35542383 35542403 CCAGGAATTTACTCGTCAGGA 60 Novel Rattus norvegicus 81 AABR07007055.1 ENSRNOG00000061365 ENSRNOT00000077804 3 1 1 152 1 278478864 278478882 TTGAGGCCAAGGATGAGTG 60 278477564 278478748 CCAGGAGGTCATTTCCCTG 60 Novel Rattus norvegicus 81 AABR07057415.1 ENSRNOG00000051512 ENSRNOT00000077075 1 1 1 99 7 70157365 70167198 GTGGTTGCTTTCTGGTGTG 60 70157284 70157302 ACCTTCAGAAGAGCAGCAG 60 Novel Rattus norvegicus 81 AABR07069791.3 ENSRNOG00000056347 ENSRNOT00000080549 1 1 1 60 8 40037648 40037668 CTCTTCAGTCCTCAAGTTGTC 58 40037364 40037382 AAGACAGGGTTGGAAGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069816.1 ENSRNOG00000052868 ENSRNOT00000086487 1 1 1 87 8 40855280 40855298 CTGGAGTGAGGGAATCTCG 59 40795822 40855229 GTCAGTCTCCCATCCTTCC 59 Novel Rattus norvegicus 81 AABR07007065.1 ENSRNOG00000061842 ENSRNOT00000081741 3 1 1 83 1 279109575 279110381 CACCATCATCAACAGAAGGC 59 279109511 279109529 CCTCAGGAGACATTTGCAC 59 Novel Rattus norvegicus 81 AABR07043625.1 ENSRNOG00000053062 ENSRNOT00000080396 1 1 1 81 19 32836217 32836236 TCTCAAGTCCTCTGTCTCTG 58 32836280 32837392 GTCTCCAACTGTTGCTCTG 59 Novel Rattus norvegicus 81 AABR07057633.1 ENSRNOG00000053925 ENSRNOT00000080336 1 1 1 80 7 81884325 81884346 GAAGAACTCAGACATACAAGCC 59 81884384 81899745 AAGAGTTGCTTCTTCAGAAGAG 58 Novel Rattus norvegicus 81 AC107174.2 ENSRNOG00000060513 ENSRNOT00000087425 3 1 1 78 8 48308937 48379612 AGATGAAATGACAGAAGACGTC 59 48308880 48308898 TAATGCTTCCGTTTGCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000077876 3 1 2 80 19 39502518 39502537 ACTTCATCTCATTGCTCAGC 58 39502577 39504268 GGTGTAACTTCAGAGAATCTCG 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000091294 1 1 3 82 7 97462387 97462407 GAACATGGACTTACTGTTTGG 57 97397638 97462345 ATCAAACATCTCTGACCTTCC 58 Novel Rattus norvegicus 81 AABR07040959.1 ENSRNOG00000056071 ENSRNOT00000091436 2 1 1 60 X 115910649 115910670 GCTTTCTATGCAAGAAAGACCT 59 115910686 115910709 CTACTTACTCTTAAGGAAGGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 3 1 1 61 10 16235992 16236012 GACAAGAGTCCTGTACTTGGA 59 16236035 16236416 TTGTGGAGTGAAGGATGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070122.1 ENSRNOG00000061391 ENSRNOT00000080725 1 1 1 81 8 53558569 53560971 AGCATTAGGCACTACAGGAG 59 53561015 53561033 GTCTGGCCTTCAATTCGTG 59 Novel Rattus norvegicus 81 AC111369.1 ENSRNOG00000053789 ENSRNOT00000086750 1 1 1 80 10 16949165 16949183 CCATGCCAGCTTCTATCCA 60 16948878 16949122 TCCTGAGGATGGTGATTCTC 59 Novel Rattus norvegicus 81 AABR07041239.1 ENSRNOG00000054788 ENSRNOT00000083591 2 1 1 88 X 123662353 123662372 CTACCTTCTGGGTACCACTC 59 123603291 123662302 CAGGAACGCAGAAAGACTG 59 Novel Rattus norvegicus 81 AABR07058141.1 ENSRNOG00000056489 ENSRNOT00000079932 1 1 1 80 7 102155701 102162789 ATCAGGGCCTCAATCTCAC 59 102155639 102155658 TCGTCTTCCATCCCTTTGTC 60 Novel Rattus norvegicus 81 AABR07070151.1 ENSRNOG00000058918 ENSRNOT00000091893 1 1 1 80 8 54640858 54640877 GGATGATTCAGTCTGGTGCT 60 54639422 54640816 GTCATAGGAGCTTGGACCTC 60 Novel Rattus norvegicus 81 AABR07041316.1 ENSRNOG00000054068 ENSRNOT00000085411 1 1 1 80 X 126062963 126117065 ACATACCTTAAAGGCTTGCTG 59 126117101 126117125 CCTTATTATTTATGCAGAGGACCTG 60 Novel Rattus norvegicus 81 AABR07058173.1 ENSRNOG00000056959 ENSRNOT00000087542 2 1 1 118 7 103557104 103557124 GAAGTTCAAGAAAGGATGCTG 58 103568784 103582818 TTGATGCTTGAACCTTAGCA 58 Novel Rattus norvegicus 81 AABR07070161.4 ENSRNOG00000055224 ENSRNOT00000080908 1 1 1 80 8 55530130 55530262 TTGCATATCCAGCTTAAGGC 58 55530069 55530090 GGTGACTGTTCCATAGAATCTC 58 Novel Rattus norvegicus 81 AABR07041411.1 ENSRNOG00000059746 ENSRNOT00000077836 1 1 1 80 X 129335580 129335600 ACAGGATTCAGTTCATCTGCA 60 129299626 129335540 TGTTTGAACAGGAAATGCCTG 60 Novel Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 1 1 1 60 7 105102037 105102059 CAGATGTTAGTCATCTTCTGAGC 59 105102077 105122143 TGGTTCTTAGCTCAGGATTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122 2 1 2 79 X 137478042 137478060 GAAATTGGTGATGGGCCTG 59 137473721 137473740 CTTGTCTTCAGTTCTCCCGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058332.1 ENSRNOG00000058554 ENSRNOT00000084008 1 1 1 80 7 110624300 110624319 AGTTCCTATCAGTCTCACCT 57 110624361 110673502 CATGGCTTAGAATGCTTCTG 57 Novel Rattus norvegicus 81 AABR07058360.2 ENSRNOG00000053271 ENSRNOT00000083791 3 1 1 176 7 111697216 111697234 CCACCAATGCCTTAACAGG 59 111675346 111697078 AGAGCTTTAGGAGACCATCTC 59 Novel Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 2 2 2 81 10 35049328 35053146 AGACAATGACAGACCTTCCA 59 35049266 35049285 CTCTGTTCTCTAAGCCAGGA 59 Novel Rattus norvegicus 81 AC115159.2 ENSRNOG00000059416 ENSRNOT00000084731 3 1 1 132 10 35965638 35965656 CATACCTCCCACAGGTAGC 59 35962360 35965548 CCCTCAAAGGATCTTTATCTTTCTG 60 Novel Rattus norvegicus 81 AC112328.1 ENSRNOG00000053602 ENSRNOT00000090955 3 1 1 83 8 59108065 59110116 CTGTGAGAGCTAGCAACAG 58 59110163 59110181 TTGTAGTCAGTCTTGCCCA 59 Novel Rattus norvegicus 81 AABR07058498.1 ENSRNOG00000055973 ENSRNOT00000083221 1 1 1 93 7 119690093 119690111 CTGGTTACAGACCCTGGTC 59 119696018 119696036 ATCCTGACACTTCCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058501.1 ENSRNOG00000057757 ENSRNOT00000080245 2 1 1 80 7 119753568 119754512 GTCCTCAAAGGGACAACCT 59 119754555 119754574 GAACATCTTCATGCCTGAGG 59 Novel Rattus norvegicus 81 AABR07027910.1 ENSRNOG00000053712 ENSRNOT00000080015 2 1 1 80 17 48644950 48644968 GCTGACTCTTTGTCATTGC 57 48645010 48645136 TTCACAGATATTCTCCTCGTC 57 Novel Rattus norvegicus 81 AC141997.1 ENSRNOG00000059136 ENSRNOT00000083119 3 1 1 99 7 126702251 126702270 GATTCTCAGGACCAAGGAGG 60 126702332 126702506 GTGTCCAGTCTTCCTGGAG 59 Novel Rattus norvegicus 81 AABR07007853.1 ENSRNOG00000056525 ENSRNOT00000086168 1 1 1 125 2 31386333 31388254 ATGTAAACACATTGAGGCCT 58 31388342 31388360 TTGACCGAGTGTCTATCCA 58 Novel Rattus norvegicus 81 AABR07028039.1 ENSRNOG00000058764 ENSRNOT00000090269 3 1 1 87 17 54485326 54485344 CATGTCTGAGGGAGCTCAG 60 54485394 54497526 AGTCAAGTTCTCCTGTTCCA 59 Novel Rattus norvegicus 81 AABR07028113.1 ENSRNOG00000060370 ENSRNOT00000082440 2 1 1 80 17 57471313 57471884 TGCTGTTGAAGAGGTTTGC 59 57471927 57471946 TTTCTACAAAGCCCACTTGC 59 Novel Rattus norvegicus 81 AABR07044562.1 ENSRNOG00000052789 ENSRNOT00000082975 1 1 1 80 20 10613772 10613795 GGTTTGTAGAAAGAGAAGAACTCG 60 10613832 10614490 CGTTGATCTTAAACGCTCTGG 60 Novel Rattus norvegicus 81 AABR07070714.2 ENSRNOG00000057135 ENSRNOT00000088843 2 1 1 81 8 81465370 81465392 CAAGAATGGATATAACGGGACAG 59 81464678 81465330 CTCATCCCATAGCCCTAGAC 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089706 3 1 2 80 8 82416601 82416622 AACTGTTTATACGGGAAGACAC 59 82416660 82417949 CTGTACAGTGAGGTCTAAAGGT 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089552 2 1 2 81 8 82418052 82419539 GCCCAGATTTGATCAAGATACAG 60 82419580 82419598 CTCTGGTTCTTCCTCTGCA 59 Novel Rattus norvegicus 81 AABR07044752.1 ENSRNOG00000055901 ENSRNOT00000089930 2 1 1 63 20 19555186 19555204 CTGATTCCAGAATGGCTGC 59 19554430 19554448 CAAACTGGAGGTCAGAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008066.3 ENSRNOG00000056624 ENSRNOT00000085890 2 1 1 80 2 41528213 41528234 TAAAGAACTGATGAAGCCACAC 59 41528274 41528886 CTCTGATCACTCACTTGCCT 60 Novel Rattus norvegicus 81 AABR07059641.1 ENSRNOG00000052257 ENSRNOT00000084091 3 1 1 81 4 29623275 29624096 GTCAAAGATCAGGGCTCCA 59 29623212 29623231 GTCTCTACCACATCTCCCTG 59 Novel Rattus norvegicus 81 AABR07059869.1 ENSRNOG00000057426 ENSRNOT00000089394 2 1 1 97 4 39145253 39147498 GGAGATCAGAAAGATAGACACC 58 39147553 39147574 TGCAGAGAATAGTAGCATACCT 59 Novel Rattus norvegicus 81 AC130585.1 ENSRNOG00000052904 ENSRNOT00000082020 1 1 1 80 8 99958629 99960515 GATTGACAGGTTGTTCATACAG 58 99958570 99958590 CTTTCTAGGTTCTTGCCTCTC 58 Novel Rattus norvegicus 81 AABR07044825.1 ENSRNOG00000057203 ENSRNOT00000089779 2 1 1 65 20 22491986 22492006 CTTATCCGGAGTTCTTTACCA 57 22491248 22491962 CCCTTCAGGAGTCTATATTGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07028749.1 ENSRNOG00000056802 ENSRNOT00000083328 2 1 1 89 17 84664912 84665809 TCCAAGGAGTCAAGCACTC 59 84665861 84665880 ATTTGTGAAGTGTTGGCTCC 59 Novel Rattus norvegicus 81 AABR07072984.1 ENSRNOG00000059602 ENSRNOT00000087184 2 1 1 81 4 43161600 43163815 CTGCTTTCCATGAAACAAGC 58 43163857 43163877 CATGAAGTCAGACATTGTTGC 58 Novel Rattus norvegicus 81 AABR07028792.1 ENSRNOG00000054565 ENSRNOT00000088124 2 1 1 92 17 86511675 86519499 TGGTCAAAGCAAGGTATTTCC 59 86519553 86519571 GAAGTGGTCAGGCAAACAG 59 Novel Rattus norvegicus 81 AABR07044903.1 ENSRNOG00000057647 ENSRNOT00000087727 2 1 1 93 20 25963730 25963751 CCATCTAAAGAGCTATGGAGAG 58 25968732 25968752 GACGTGGGATCTATTTCAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060084.1 ENSRNOG00000058930 ENSRNOT00000091929 3 1 1 83 4 53255691 53271213 CAAGGCAAGGATTCAGCTC 59 53271258 53271278 GCAGGAAATCTGGTAGTTCAC 59 Novel Rattus norvegicus 81 AABR07045015.1 ENSRNOG00000054550 ENSRNOT00000084794 1 1 1 80 20 31695981 31696479 TACGAAATGCCCATCCTGG 60 31696523 31696541 CACAGGAAGTCTAGACGGG 59 Novel Rattus norvegicus 81 AABR07071374.1 ENSRNOG00000061212 ENSRNOT00000087863 1 1 1 83 8 112487989 112488260 TAAGCTCAAGGCTAGTGACC 59 112487925 112487947 CACTGGTATAGATTCCATCTGAC 58 Novel Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 1 1 1 60 20 38137036 38137056 AATCTCAGTGGGTGATCTCAG 59 38137075 38140118 AACTGGATAGAATGGATGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 2 1 1 60 20 38137038 38137056 TCTCAGTGGGTGATCTCAG 58 38137075 38140120 GTAACTGGATAGAATGGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 3 1 1 61 20 38137040 38137058 TCAGTGGGTGATCTCAGGA 60 38137077 38140123 GATGTAACTGGATAGAATGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 2 1 1 70 4 63631540 63698671 GAACAATAGAAGGCGAAGATAGC 60 63631492 63631511 GTAGAAGGGAGGTAGGTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071543.1 ENSRNOG00000060423 ENSRNOT00000080802 2 1 1 80 8 121433467 121434760 AAATGAGAGCATCAAGTGGT 58 121434801 121434821 GGTCATTAGGAGTTCATGGTG 59 Novel Rattus norvegicus 81 AABR07060560.4 ENSRNOG00000057253 ENSRNOT00000083187 1 1 1 134 4 80811256 80849094 CAGGAATTCTCAAGTGTTTCTG 58 80811143 80811161 ATGTTCTTTCTCCTCTGGC 57 Novel Rattus norvegicus 81 AABR07044036.1 ENSRNOG00000059054 ENSRNOT00000080991 1 1 1 60 19 53395381 53396305 CCATCATTTGAAGAAGATCTGC 58 53395342 53395362 AGGTGATTACTCTTCCTCACG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07071765.2 ENSRNOG00000051645 ENSRNOT00000080648 1 1 1 100 8 130243161 130243179 ATATGCAGGTGTCCAGCTG 60 130246377 130246395 GCCTGAATCCAAAGTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 1 1 1 61 8 130967925 130967943 CTCCCAGCAGAACAGAGTC 60 130967674 130967900 CTGTTCGTTCCTAGCACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058955.2 ENSRNOG00000054057 ENSRNOT00000079399 3 1 1 80 7 145375694 145375712 CTCAGAGCCAGTCTGTCAG 60 145375753 145376717 CACCTATGTAGCTTCTCAGGAG 60 Novel Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 2 1 1 61 2 102164297 102164316 CTTAACTGCTGAGCCATCTC 59 102154178 102164275 TTGATGCAGAACAAATAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010155.1 ENSRNOG00000054869 ENSRNOT00000083082 3 1 1 80 2 127249173 127249347 ATGCTCAGGAGTTATCAACAC 58 127249113 127249134 CAGTTAAATGTACAGACTCGGT 58 Novel Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 3 1 1 92 2 150686687 150686705 GGACATCTGAAGGCAAAGG 59 150686758 150689251 TCTTTCAGATTAGACCATGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 3 1 1 65 2 162021747 162022789 TTTCCTTCTTACAGCAGCA 57 162022816 162022836 TAATCAGGCTTCATACTTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC131411.1 ENSRNOG00000052870 ENSRNOT00000078297 2 1 1 82 14 11297311 11312056 TAGCACAGCACATGATGGA 59 11297247 11297268 TTTGACATCAGACACTTGACTC 59 Novel Rattus norvegicus 81 AABR07014424.1 ENSRNOG00000051389 ENSRNOT00000080921 3 1 1 82 14 15418315 15418336 ATTCAATTGTCTCCAGCATCTC 59 15418379 15419169 TCATCAGGCTCCTGAAGAC 59 Novel Rattus norvegicus 81 AABR07072775.1 ENSRNOG00000052798 ENSRNOT00000082525 3 1 1 81 2 209358494 209358512 AACCTTTCAGCCCTAGAGC 59 209319618 209358450 GTTTGCTTCAAAGAGCTGGT 59 Novel Rattus norvegicus 81 AABR07013070.1 ENSRNOG00000054507 ENSRNOT00000083297 3 1 1 82 2 221230473 221237037 GTGGCATAAGGAACTCCTG 58 221237081 221237101 GTTCTAGTTTGCCAGGATGAG 59 Novel Rattus norvegicus 81 AABR07013073.2 ENSRNOG00000056395 ENSRNOT00000084403 1 1 1 80 2 221510443 221512165 GTCCAGAGGAAGCAATCTG 58 221512206 221512227 GCGCAGATACAAGAATTAATGG 58 Novel Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 2 1 1 62 2 249514673 249514692 AAGAGAATTAGCTGCACGGA 60 249514717 249515168 AATTTCAGCCTCCATCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013788.1 ENSRNOG00000055552 ENSRNOT00000084573 1 1 1 73 2 256767239 256767257 GTAGTCGGTTCTCCCAGAC 59 256767761 256767779 GTCCTTGAATGCTGTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013788.1 ENSRNOG00000055552 ENSRNOT00000084573 3 1 1 76 2 256767239 256767257 GTAGTCGGTTCTCCCAGAC 59 256767764 256767782 TCAGTCCTTGAATGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000007671 1 1 4 80 7 115858879 115860521 TTCTGCAGCACATAGAGCA 59 115858817 115858835 GAAGCAGGTAGGTGGACTG 60 Novel Rattus norvegicus 81 ENSRNOG00000030948 ENSRNOT00000048541 3 1 1 196 12 50212240 50212259 GAAAGGAGAAGCTGGAATGG 59 50212027 50212045 CTTAGGATTGGCTTTCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014242.1 ENSRNOG00000051404 ENSRNOT00000057117 2 1 1 60 14 5868912 5868931 CATGATAATTGGGCCTCCAC 59 5868871 5868895 CTCTATCTTAAGGCTGTATATTCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000056002 ENSRNOT00000086711 1 1 1 64 8 96169259 96169279 GATGATCCTATCCCGAATCTG 58 96169215 96169233 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0863.2 ENSRNOG00000051077 ENSRNOT00000082286 1 1 1 80 6 76684928 76684948 CACCAGAGTATTTGGAACCAC 59 76684985 76685751 GTTCTCTATAGATTCCTGCTACCT 59 Novel Rattus norvegicus 81 AABR07002267.1 ENSRNOG00000057132 ENSRNOT00000091621 3 1 1 80 1 70516689 70516709 CTAGTCAGCTTCCTGCTAGAC 60 70516626 70516646 AGATGAGTGGTTGCAGGAC 60 Novel Rattus norvegicus 81 AABR07063649.2 ENSRNOG00000056890 ENSRNOT00000078333 3 1 1 84 6 39517610 39517630 GACTACTGTTCAGGAAGAGCT 59 39517676 39517696 CTTTGTGCTCGATTGTCCC 59 Novel Rattus norvegicus 81 AABR07047750.1 ENSRNOG00000054604 ENSRNOT00000072326 3 1 1 66 5 45729574 45729595 CCTAGCCATTCTGACTTGTG 58 45729527 45729546 TTAGTCATCAGGGAAAGGCA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07005838.1 ENSRNOG00000020446 ENSRNOT00000027709 3 1 1 60 1 202904638 202904659 TTATGTGCACGCTTTAAGACAG 60 202904680 202904698 CACAAATGCAGCTCTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056998 ENSRNOT00000082325 2 1 1 60 3 58994493 58994512 GGGTCATTTGGAGAATTGGA 58 58994535 58994553 GATGCATGGAGGAATGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061309 ENSRNOT00000085521 2 1 1 60 17 63251801 63251820 TGAATGACCCTTACTGTCCC 59 63251841 63251861 ATCTTTGTCAACTGAGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055631.1 ENSRNOG00000050212 ENSRNOT00000075246 2 1 1 61 7 7291085 7291103 TTTGTTGTGATGCAGCTCC 59 7291129 7291150 CATCTGTTCTATCAACCATGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 2 1 1 66 18 40124192 40124210 CCCAGTGTTACTGGGACAG 60 40124242 40124260 TGACTTGAATCCTTGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 2 2 2 80 5 77341446 77341467 AGTGCAGGGAACTATATTTGGT 60 77246988 77341408 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 1 2 3 72 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386148 121386166 CTTCTGTCCAGACTCTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420 1 1 2 156 14 83885878 83887533 TCTTTCTTCTCGGCCAGAC 59 83885740 83885759 CTTTCTCCAGAGGAAAGCCT 60 Novel Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420 2 1 2 157 14 83885878 83887533 TCTTTCTTCTCGGCCAGAC 59 83885739 83885758 TCTTTCTCCAGAGGAAAGCC 60 Novel Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000090573 2 1 2 80 15 36897697 36897715 ATTCCAGTTCTGCCTTCCT 59 36897758 36898028 TTGGGATGAATCCTACCAGG 59 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 2 1 1 60 16 19954694 19954712 GCGACTTCAACAGCAACTC 60 19954739 19954758 GTCATTGAGAGCAATGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA61 ENSRNOG00000058216 ENSRNOT00000088590 1 1 1 60 1 267567063 267567082 TCCCATTGGATGTTGATGCT 60 267567103 267567123 CACCTTCAGTACACTCTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059952 ENSRNOT00000091784 2 1 1 60 5 147361841 147361863 GGAACGATACAGAGAAGATTAGC 59 147361883 147361901 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000004278 1 1 2 81 X 72075658 72075678 AAGGTGAATGACACCATTCAG 59 72074840 72075615 TACACAGGTTCCCAGTGTC 59 Novel Rattus norvegicus 81 AABR07006081.1 ENSRNOG00000016597 ENSRNOT00000022226 1 1 1 60 1 218972667 218972688 AAGAATCTCTTGGTTAGGACTC 57 218972628 218972647 ACTAAAGGCAAAGATCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052823 ENSRNOT00000091548 1 1 1 60 10 89277138 89277156 CTTATCCATTGCACTCCGG 58 89277180 89277198 TTGAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 2 1 1 64 8 13223532 13223552 ACTAAGTTGCTTCTGATGTCG 59 13223582 13223600 CTCCTGCTCATCATGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 1 1 1 60 15 109346165 109346184 TTCTTAAGGGATGGTTGGGT 59 109346208 109346228 ACAATTTCTCCACCAAGTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 1 1 1 91 X 147586611 147586629 GACCAAACCAGCTGAAACC 59 147586536 147586555 ATTCACGAATGTATTCGGGT 57 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 1 1 3 118 X 73496702 73496720 GTATTGAAGCAGAGCGTCG 59 73501469 73501487 AATTCTTCAGGGTCCCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 1 1 1 63 5 124275960 124275978 ACTTCACCTCATCCCACAG 59 124276010 124276028 CACTCTGTTCCCTCTTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059689 ENSRNOT00000082568 3 1 1 60 13 91063305 91063327 TGAAGATGGTCTAGTTACACCTG 60 91063267 91063286 AGCCAGATCAATGGAATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058060 ENSRNOT00000086965 1 1 1 60 7 20742918 20742937 CAGAATCACAGCCAATGAGG 59 20742957 20742978 GAGTCACACTTTGAATTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056000 ENSRNOT00000091660 1 1 1 60 X 34159381 34159399 GGTTAGGCAGATGTCCCTC 60 34159419 34159441 GGAAAGATTGTCCTCTTCAACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056000 ENSRNOT00000091660 2 1 1 60 X 34159355 34159377 CTAGGGTTGATTTGGTTGATCTG 60 34159397 34159415 ACCTAGAGTGGTGAGGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 2 1 1 65 13 52266821 52266840 AAGATGATGCTGGAAGGAGG 60 52266774 52266792 AGAAGGCAAGATCTGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 3 1 1 62 4 89960564 89960582 CTGCTGAGGATCCCTTACC 59 90089657 90089675 TGGATTTACCTGCTAGGGA 57 Novel DesignNoJunction Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 3 3 3 90 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016318 74016336 GTGGAGGCAGATTCTTTGG 59 Novel Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000081697 1 1 2 80 8 64852295 64852315 CTATGAGTACGTGATCATGGG 58 64844477 64852253 CCATTGAAAGGTTCTCCCG 59 Novel Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000081697 3 1 2 80 8 64852296 64852317 CACTATGAGTACGTGATCATGG 59 64844479 64852255 ATTGAAAGGTTCTCCCGGT 59 Novel Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 3 1 2 83 17 14947099 14947117 ATGCTGCAAAGAATGTGGA 58 14946566 14947026 GACTAAATTCCTTCTTCCTCTCAC 59 Novel Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 3 1 1 60 1 99888422 99888442 TCATCTTCAGTTTCCTCAGCA 60 99889271 99889290 TGAAAGGCGTACTGTAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147 1 1 4 81 1 134885496 134887638 CCCGGTATCTTAGAAGATGGT 59 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 1 2 3 60 20 4871818 4871838 ATCTCATTGTCTAACAAGCCC 58 4871531 4871549 TTTGAGTAGCAGCTAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 1 2 2 80 1 11984283 11985887 GATTAGAAAGCAGGGTTTCACC 60 11984224 11984242 CACCTGCCATCAATGTACG 59 Novel Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 3 2 2 86 1 11985928 11985947 CTGAAAGAGTTGCTGCAGAG 59 11984278 11985879 TCTTTGGTGAAACCCTGCT 60 Novel Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 1 1 1 73 5 24974435 24974453 TTGTGCATGGTATTGGTCC 58 24970285 24970303 GCTACATCCTCATGCTAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 2 1 1 73 5 24974435 24974453 TTGTGCATGGTATTGGTCC 58 24970285 24970304 GCTACATCCTCATGCTAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047761.1 ENSRNOG00000061618 ENSRNOT00000091625 3 1 1 60 5 46314595 46314618 GAATACGGAACAGATACTTATGGC 60 46306972 46306994 CAGACATCTTCTGAAATCCACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 2 2 3 87 1 19639162 19639280 CATTGATGTATCTGCAACTGCT 60 19639096 19639116 CTCGTTGATGTTCTGGATGTC 59 Novel Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 2 1 1 62 10 93238199 93238221 GTGAAATGATGGAGAATGTGGAG 60 93239922 93239943 CACCTATTTGATCAGCATTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 2 1 1 60 15 1161397 1161418 CAGCATGATGAATGTCATATGG 58 1152896 1152916 AGCAAATTAGGTCCACATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 2 1 1 60 5 123667091 123667111 TGCAGACGAGTTATTATGCCT 60 123663580 123663598 TGTTCTCCACCATCAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 2 1 1 60 4 162999616 162999637 TTTCCTTCTCATTCGGAAATGG 59 162999656 162999676 TACAGCTGTTCTTTCAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 2 1 1 67 4 171959381 171959399 AGACATCAGCAAGTACCCA 58 171960448 171960466 CAATCGTTTATGGTCGCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033145.1 ENSRNOG00000057439 ENSRNOT00000081332 1 1 1 75 11 7581426 7581445 TGAAGAGTCTACAAAGGCTG 57 7582452 7582471 CCATGGTTATTTGTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 3 1 1 70 1 45409547 45409566 TTATTTCAGTCTTCGTCGGG 58 45409398 45409416 ATCTCAGCACATAAACCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 1 1 1 70 5 133892896 133892915 GACTCAAGAGCTTCCTTCTC 58 133890126 133890144 TTCTTGTCCACTCAGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 2 2 2 81 15 46495173 46495191 ATCTTGGGAAAGGCAACGA 60 46495232 46502323 GGTCATCTTCTTTGAATCTCCTG 59 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 3 2 2 90 6 64609027 64609045 GTTTGCAGAGGTGACAGTG 59 64593182 64608973 TGTCTTCCAGTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 2 1 1 60 3 22637557 22637577 GCTGTAAACACAGATCCTGAC 59 22636551 22636572 CAAACTGTCTTCACATACTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 2 1 1 60 3 25350837 25350855 AGTTTGACTGTGCTGATGG 58 25335836 25335855 TGATCTTTGGAACAACTCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 1 1 1 60 1 108840492 108840511 TGGCTACTGTCAAGTAACCC 60 108840347 108840368 GTTCTTTACAGACTGACTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021392.1 ENSRNOG00000052094 ENSRNOT00000081477 1 1 1 60 13 69628274 69628292 AAACGGTGCTCTGTTACTG 58 69628521 69628541 GTTATTGCAACAGATGCTGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 3 1 1 61 3 71664834 71664852 ATGACAAATGCTGCTTTGG 57 71666556 71666575 ACAACAACTGAAGGCTTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 2 1 2 117 12 3807977 3808636 CTTACTCCTCATGCAGATGC 59 3808716 3808734 GATACAGAGTCCCAGCTCG 59 Novel Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000078486 1 1 2 83 3 108641405 108641424 AGACTCTTGAGTTCCTTCCT 58 108640273 108641359 TTCATTTGCTTCCCTGAGC 59 Novel Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 2 1 1 104 12 33221228 33221246 GATCACATCTGTCGCTGAG 58 33231344 33231362 TGTCAAGTCTCAGGGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 3 2 2 95 3 154850624 154850643 GATTACAGCTTCTGCAGCAG 59 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 1 1 1 60 16 64924504 64924523 GTATTCACTGACTGTCAGCA 58 64923427 64923448 CAGGATTAGTAAATACCCTGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07037715.1 ENSRNOG00000058602 ENSRNOT00000085095 2 1 1 62 X 28942389 28942413 CCATTAGGTCTTTACTAATAGCCTG 59 28943222 28943241 TAGCCTTCTCTGAAATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 1 1 2 80 X 35983909 35984120 GAGAAGACCATATCTACGCCT 59 35983849 35983867 AATGCTGATGTCCTGTCCA 59 Novel Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 1 1 1 66 1 259107321 259107342 GCAAGAACTGGAATTACTTGTG 58 259111310 259111330 AGACCTTTCGTTCTTCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006953.1 ENSRNOG00000051797 ENSRNOT00000083332 1 1 1 60 1 272859338 272859359 CTGTGGAAAGAATGATAGATGC 57 272858845 272858863 TTCGTTCCATGATTCAGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 3 1 1 61 7 80270652 80270671 GTACCAGTATGCTAGAGGCC 60 80283157 80283177 CTCCACTTCTCTTCTCTTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 1 1 1 60 7 126382975 126382993 AACTGGAGTCACTCCAGAG 58 126383597 126383617 TGATGGATGATAGATGCCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 1 2 2 80 4 106454 107901 GGATAGCTGAGTCACTACCTG 60 107941 107961 GAAGTTCCATGAGAGGATTGC 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 2 2 2 80 4 106457 107902 TAGCTGAGTCACTACCTGG 58 107945 107964 GAGGAAGTTCCATGAGAGGA 59 Novel Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 1 1 1 60 4 5628101 5628119 TTATGGGATGTGCTGAGGA 58 5627168 5627189 GCTGATGTCCTATGACTTTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 3 1 1 91 4 17666210 17666230 TAAGGATTCAGAGTGAGTCCC 59 17668584 17668602 GAACTCCAGGCTCCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 2 1 1 64 20 48815843 48815862 CAATGAAGACCACCACAGTG 59 48814469 48814490 CATGTCCTTGCTTGTTTATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 1 1 1 60 2 63732541 63732559 GGCATGAAACCCTGATGAG 59 63734650 63734669 TTGTCAGTAAAGGATTGCGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 1 1 1 60 7 140008674 140008694 AATGTCTCCAGTGTTTCTTCC 58 140010227 140010245 GAAAGTCTTCTGCGTGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011864.1 ENSRNOG00000058315 ENSRNOT00000087391 3 1 1 73 2 173565611 173565629 TACCAAACTGCTACAGCAC 58 173568550 173568570 TAAGTGTACAAGGTTACAGGG 57 Novel DesignNoJunction Rattus norvegicus 81 Mt-cox3 ENSRNOG00000030700 ENSRNOT00000049683 3 1 1 60 MT 8623 8643 CATATAGTAAACCCAAGCCCA 58 8660 8683 ATGTAAGTAGAAGAGCTGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd3 ENSRNOG00000033615 ENSRNOT00000041241 1 1 1 60 MT 9641 9661 TATTCGACCTAGAAATCGCCT 59 9680 9701 GTATTGGTTGTTTGAATCGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir137 ENSRNOG00000035491 ENSRNOT00000053614 3 1 1 60 2 221658140 221658161 GGGTGGATAATACGGATTACGT 60 221658182 221658200 GGTACTCTCCTCGACTACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362724 ENSRNOG00000038965 ENSRNOT00000015146 3 1 1 60 X 20563918 20563936 AACCTGAGAATCGTTGGAG 57 20563960 20563978 TTACAGATGGTGTCAGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf11 ENSRNOG00000018825 ENSRNOT00000077584,ENSRNOT00000059987 2 2 2 80 15 34237873 34238158 ATGTCTCACTTCTTGCCCA 59 34238201 34238220 ATCTTTGCTGTAGATGCCAC 58 NA Rattus norvegicus 81 Mir124-2 ENSRNOG00000035499 ENSRNOT00000053622 1 1 1 64 2 102311609 102311627 ATCAGAGACTCTGCTCTCC 58 102311654 102311673 GCGTGCCTTAATTGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375,ENSRNOT00000031743 3 2 2 80 2 186425959 186425980 ATGATGTGGATCTGAAACAGGA 60 186425687 186425921 CATTGGTTGGATCCTTCATCTC 59 NA Rattus norvegicus 81 AC115371.1 ENSRNOG00000048644 ENSRNOT00000065210 1 1 1 119 15 33610921 33611434 TATTCATCAGGAAGCCGCA 59 33611517 33611535 GAAGGACGAGGAGATGGAG 59 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813,ENSRNOT00000077883 2 2 2 80 2 212547367 212547386 GACGAAACTTAGCTTCAGGA 58 212547426 212552007 CTACTGGTTTAGGTACACATGG 58 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 2 3 3 87 5 171525695 171544602 AAACCTGCCAAGATGTGGA 60 171544653 171544671 TCACAGAGGTAAGAACCGG 59 NA Rattus norvegicus 81 Hist2h2aa2 ENSRNOG00000047898 ENSRNOT00000044268 1 1 1 61 2 198381950 198381968 AAGAAGACCCGCATCATCC 60 198381907 198381925 TTGAGTTCTTCGTCGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 1 2 2 87 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757573 33757591 CTGATAGTCCTGAGGCCTG 59 NA Rattus norvegicus 81 Gzmbl3 ENSRNOG00000046301 ENSRNOT00000045209 3 1 1 83 15 36112996 36113154 CTATTAAAGCTGAAGAGTAAGGCC 59 36112936 36112955 TGGCTTCACTTTGAAGTTGC 60 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 3 2 2 83 2 52505527 52507204 AATGCCAGGTCTGTAACAG 58 52505462 52505481 GGTTGGGTTTATCTCCAGTG 58 NA Rattus norvegicus 81 Ermap ENSRNOG00000000335 ENSRNOT00000039305 1 1 1 80 5 138237931 138239251 CACAGAAGATGTCAGTTCATATGG 60 138237874 138237893 AGATGGCTATCGTGAAGAGG 59 NA Rattus norvegicus 81 Ermap ENSRNOG00000000335 ENSRNOT00000039305 3 1 1 81 5 138237931 138239251 CACAGAAGATGTCAGTTCATATGG 60 138237873 138237893 AAGATGGCTATCGTGAAGAGG 60 NA Rattus norvegicus 81 LOC100911669 ENSRNOG00000049874 ENSRNOT00000074860 3 1 1 86 5 135030108 135030126 ACTGATCCGTCTTCTGTGG 59 135030175 135030768 GTGTCTGAGAACTTGAGGTG 58 NA Rattus norvegicus 81 Ttc3 ENSRNOG00000001682 ENSRNOT00000065600 2 1 1 80 11 34612713 34612736 TGTATCTGTACTCCTGACTTTACC 60 34612775 34613071 ATATTGCATACCCACGCCT 59 NA Rattus norvegicus 81 Zic1 ENSRNOG00000014644 ENSRNOT00000019860 1 1 1 164 8 98735788 98735806 CTTCAAGTGCGAGTTCGAG 59 98734946 98735661 GACTCATGGACCTTCATGTG 58 NA Rattus norvegicus 81 Mpl ENSRNOG00000028377 ENSRNOT00000034762 3 1 1 80 5 137270120 137270138 CTCACTTCCCGACCTACAC 60 137269736 137270078 GTAACTGTGGCCTTAGAAGGA 60 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 1 2 2 80 20 5548776 5548998 GCTTTGAGGTAACAACATCGT 59 5549037 5549058 GATTCTCAATCCATTTGTCCCT 59 NA Rattus norvegicus 81 Crybg3 ENSRNOG00000001687 ENSRNOT00000002292 1 1 1 80 11 42995433 42997810 GTGGATAAAGAGTGGCTTATGG 59 42997849 42997869 ATCTCATTAGGCACAAGGAGG 60 NA Rattus norvegicus 81 Ttc33 ENSRNOG00000013217 ENSRNOT00000017665 3 1 1 80 2 54921922 54921940 AAGTGGGATGAAGCACTCC 60 54921982 54926872 ATGAAGAGACATCAGGACCTG 59 NA Rattus norvegicus 81 Ankrd55 ENSRNOG00000013555 ENSRNOT00000018438 1 1 1 80 2 44145047 44158612 AGGACACAGAGGGAATGAC 59 44158655 44158674 CCTTCTTCAACAGCATCTGG 59 NA Rattus norvegicus 81 Sclt1 ENSRNOG00000014139 ENSRNOT00000019256 1 1 1 80 2 128653264 128653284 CTTTACCTCCTCTCATTGCTG 59 128642826 128653225 CCATGTGTTTCTGGTAATAGGT 58 NA Rattus norvegicus 81 Mir6325 ENSRNOG00000049963 ENSRNOT00000072252 2 1 1 60 11 36729310 36729328 TGGCCTTTCAACTGAACTG 58 36729352 36729370 AATGAAGGCCTGGAACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6325 ENSRNOG00000049963 ENSRNOT00000072252 3 1 1 60 11 36729266 36729284 CTTGAACTTGCTGCTGACC 60 36729307 36729326 GTTCAGTTGAAAGGCCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcrl2 ENSRNOG00000016164 ENSRNOT00000021938 2 1 1 80 2 186605082 186606152 TTTGATCTTTACTCCTGTCGG 58 186602913 186602932 ACTTGGTCTCCTTCATAAGC 57 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166,ENSRNOT00000056161 2 2 2 80 8 118114898 118114916 CCAGACTCTCCACACTCAG 59 118114959 118116147 CTTGGATAGCTCTGTTGCTG 59 NA Rattus norvegicus 81 Stk38 ENSRNOG00000000519 ENSRNOT00000059194 3 1 1 80 20 6228001 6228021 AAGGAAACTTTGACCTTTCCC 59 6227786 6227959 CCATTCACAGCAGAACCTC 59 NA Rattus norvegicus 81 Adpgk ENSRNOG00000026178 ENSRNOT00000013022 1 1 1 80 8 64114156 64115235 GTATTGTGCATCAGCAGGT 58 64115279 64115297 CTGACTGGCTGAGAAACAG 58 NA Rattus norvegicus 81 Sh3bgr ENSRNOG00000028238 ENSRNOT00000064981 3 1 1 85 11 36555593 36560733 TGGGTCCATAGCGATTAGG 59 36560779 36560800 CTATGTCCAGCTCCTTAAAGTC 58 NA Rattus norvegicus 81 RGD1560997 ENSRNOG00000032132 ENSRNOT00000051805 1 1 1 60 X 37026760 37026780 AATGTCCTTCTGATGAACGTG 59 37026802 37026820 TAATGCCTGTCAAAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhcg ENSRNOG00000015526 ENSRNOT00000021109 1 1 1 80 1 141336223 141336244 CTGCTCATTATGACCTTCTTCC 59 141334482 141336183 ATCCTTTGCCTCTATCAGGT 58 NA Rattus norvegicus 81 Prrg3 ENSRNOG00000047013 ENSRNOT00000071232 2 1 1 81 1 69286842 69287503 CATCATGGCTGTGTTCCTG 59 69286779 69286799 CTCCTCCAGAAACTCATTTGC 59 NA InUTR Rattus norvegicus 81 Mir383 ENSRNOG00000035589 ENSRNOT00000053712 3 1 1 66 16 57519679 57519698 CAGATCAGAAGGTGACTGTG 58 57519727 57519745 TCTTTCTGACCAGGCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000061047 3 1 2 98 11 36880190 36911835 ATCAGGAGATAATGATGGGCA 59 36911895 36911913 TGAGACTGAATGGCCACAG 60 NA Rattus norvegicus 81 Olr482 ENSRNOG00000049721 ENSRNOT00000071782 1 1 1 60 3 73493034 73493053 CAGACACTCACTCCAAACAG 59 73492993 73493013 GAGGAAATGAACATGATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910163 ENSRNOG00000047977 ENSRNOT00000074449 3 1 1 60 16 72402092 72402110 AGACAAGAAGGCAGAGGAG 59 72402134 72402152 CTCCTCCAAATCTTGGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srsf3 ENSRNOG00000000520 ENSRNOT00000000627 3 1 1 80 20 6295757 6295778 TAGGAGAAGAGAAAGGTCTCTG 59 6295819 6295924 CTAGATCGGCTACGAGACC 59 NA Rattus norvegicus 81 Smcp ENSRNOG00000009326 ENSRNOT00000012371 2 1 1 125 2 192776120 192780488 TGCCTGATCAGAAACTCCA 59 192776013 192776031 GATTTCTGCAGACAGCACG 60 NA InUTR Rattus norvegicus 81 Gpd1l ENSRNOG00000026455 ENSRNOT00000033976 2 1 1 80 8 122974175 122974194 TTCACAAGATCTGCGATGAG 58 122971928 122974135 CCTCATCTATACCCTTGATGAG 57 NA Rattus norvegicus 81 Plekhf2 ENSRNOG00000026662 ENSRNOT00000037483 1 1 1 60 5 24242149 24242168 TACAGTCAGTCGTTGAAGTC 57 24242108 24242126 TATCATCGTCATCGTCGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg5 ENSRNOG00000058694 ENSRNOT00000088575 3 1 1 80 2 143943131 143943150 GCGGATTCAAACTACTGACC 59 143943192 143945069 CTACATCAAATGCCCATCGT 59 NA Rattus norvegicus 81 Dhfr ENSRNOG00000013521 ENSRNOT00000018259 1 1 1 80 2 21932419 21934549 CAGTAGAAGGTAAACAGAATCTGG 59 21934583 21934606 CCTTTAAAGGTCGATTCTTCTCAG 60 NA Rattus norvegicus 81 Inpp5f ENSRNOG00000020388 ENSRNOT00000027630 2 1 1 80 1 200088107 200088128 CTTGTGTAGATGACATTCACCC 59 200088168 200088798 TATACCGCATTCCTGCTCTG 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775,ENSRNOT00000064593 3 2 6 82 1 76515642 76517007 CCAAGTCAGGAACGAACTG 59 76515578 76515596 GGGCATAGATTGGATCCAC 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 1 2 6 81 1 76558943 76572735 CTCATGAGGAAAGGCACTG 58 76558880 76558901 CCTGAAACACTTTATCAAAGGC 58 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095,ENSRNOT00000091612 1 3 3 80 15 42661446 42661464 TAACTCCACAGGATGCCTG 59 42661508 42664200 TTGTTGGTCGAACAGTCCA 60 NA Rattus norvegicus 81 Dpf1 ENSRNOG00000020687 ENSRNOT00000028091 3 1 1 80 1 87251894 87252129 TATGGACTGTCAGAAACAGC 58 87252172 87252190 CTCCTGGGAATGTCTTCCT 58 NA Rattus norvegicus 81 Slc2a12 ENSRNOG00000011161 ENSRNOT00000015566 1 1 1 80 1 24014512 24014533 TGTTGTTCTGTTTATACCCGAG 59 24005844 24014471 TTCACATAGTTCGCCTTCG 58 NA Rattus norvegicus 81 AABR07070594.1 ENSRNOG00000053282 ENSRNOT00000071321 2 1 1 60 8 76239683 76239703 AGGATGTGTTCAGAGACTCAG 59 76239643 76239661 AACTTGACCTTGACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911047 ENSRNOG00000047630 ENSRNOT00000074398 2 1 1 80 1 147004852 147004870 CAAAGAAGTCCCTGTTGCC 59 147004913 147006821 TGATCTTGTAGGCACCTGTC 60 NA Rattus norvegicus 81 Ppp1r14b ENSRNOG00000021151 ENSRNOT00000051749 1 1 1 80 1 222231183 222231201 AGAGCTGGAGATCGATGTG 59 222231245 222231491 ACTAGCAGCTCCTTGACTC 59 NA Rattus norvegicus 81 Nr0b1 ENSRNOG00000003765 ENSRNOT00000005023 1 1 1 80 X 54735556 54737923 TTTAACCCAGACCTGCCTG 60 54737966 54737985 CTCAGTGAGGATCTGCTGAG 60 NA Rattus norvegicus 81 Slc2a6 ENSRNOG00000005900 ENSRNOT00000008034 1 1 1 80 3 5571772 5572425 CTTGGCAAGTCTTCTGCTG 59 5571710 5571729 CTAAGCAGCAGGATCATGAC 59 NA Rattus norvegicus 81 Pkd2l2 ENSRNOG00000025489 ENSRNOT00000037690 1 1 1 80 18 27193917 27193937 CACTTCTCTACCTGATGACGA 59 27193978 27195740 GGTCCTTCCATGAACTTCCA 60 NA Rattus norvegicus 81 Cd19 ENSRNOG00000018311 ENSRNOT00000055027 3 1 1 80 1 197817833 197817969 AGACATGAAACAGGACTGGA 59 197817772 197817793 ATTCTCATAGAATTCAGAGCCC 58 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 2 2 2 84 1 79649698 79649717 GAGGATCTGCAGGAAATGGT 60 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 AC127217.3 ENSRNOG00000051586 ENSRNOT00000088386 1 1 1 60 1 172464646 172464664 CTATGTGATGCCCAAGTCC 58 172464604 172464623 GTAGAACACAGAAACCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim1 ENSRNOG00000015735 ENSRNOT00000021070 3 1 1 60 3 161290491 161290510 AAAGCTGCTTCATGCAAGAC 60 161290527 161290551 GTCCGGTGTATAAATAAGACATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911801 ENSRNOG00000049658 ENSRNOT00000071307 1 1 1 60 8 41358996 41359015 GTCTTCAGGTAAGGGTTGGT 59 41359038 41359056 AGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728,ENSRNOT00000090097 2 2 2 80 13 26801748 26801933 GTCATAAAGCAGGCACAGG 59 26801686 26801707 AAACTTTCCTGACTTAGAGGTG 58 NA Rattus norvegicus 81 LOC681382 ENSRNOG00000038257 ENSRNOT00000058235 1 1 1 60 X 57995808 57995828 TCCTGATCCATTTGAATTGCC 59 57995848 57995868 TTTGTCCTAGACTCTTCTGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681382 ENSRNOG00000038257 ENSRNOT00000058235 2 1 1 60 X 57995821 57995842 GAATTGCCTACTCTTTGTTCAG 58 57995862 57995881 ACTTTCACCAGCATTTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc30 ENSRNOG00000008560 ENSRNOT00000011325 2 1 1 80 5 138395653 138395672 GATCAAGGAAGCAAAGAGCA 59 138389321 138395612 TGGTCTAGAAGAATCCTCCTC 58 NA Rattus norvegicus 81 LOC100910899 ENSRNOG00000046328 ENSRNOT00000071676 1 1 1 60 4 1372158 1372176 TCTTCTATGGATCTGGGCT 57 1372200 1372218 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir379 ENSRNOG00000035556 ENSRNOT00000053679 3 1 1 60 6 133857719 133857737 AGACTATGGAACGTAGGCG 59 133857761 133857779 ACTGAGAGTTAGTGGACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhod ENSRNOG00000019220 ENSRNOT00000026092 2 1 1 87 1 219674981 219674999 TGTTTGAGCGCTATAACGC 59 219674274 219674930 TCATAGTCATCTTGCCCGG 59 NA Rattus norvegicus 81 Cdc23 ENSRNOG00000024241 ENSRNOT00000037888 1 1 1 80 18 27441153 27445391 AAGAGATGCTGAAGTTCCTG 58 27441092 27441113 GCTGCAATTCTGTGTATATGTG 58 NA Rattus norvegicus 81 Smpx ENSRNOG00000007495 ENSRNOT00000010027 1 1 1 80 X 40071228 40082842 GTCAGATCCATTCAGGCCA 60 40071166 40071184 CTCTTTCCTTCTGGGAGGC 60 NA Rattus norvegicus 81 Rgs9bp ENSRNOG00000012877 ENSRNOT00000017172 1 1 1 62 1 91855900 91855918 CTTAGTGCTTACTGTGGGC 58 91855856 91855874 GTCTTCTGCAGTTCTTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd17b ENSRNOG00000012514 ENSRNOT00000044486 1 1 1 80 1 239293564 239293583 GTTCTGGAAAGCCAACAGAG 59 239293626 239297832 GAATGCCGTATCTTGTCCG 59 NA Rattus norvegicus 81 LOC307727 ENSRNOG00000039726 ENSRNOT00000060930 1 1 1 60 X 10811703 10811722 GAGCCCTACAGTGAAATACG 58 10811745 10818494 AAACTCCCTGAGTTCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Dmbt1 ENSRNOG00000020560 ENSRNOT00000054910 1 1 1 80 1 201671338 201671356 TTTCCCTCTCCAGATTGGT 58 201671640 201671737 CTGAATGGGATAGGGATAGGT 58 NA Rattus norvegicus 81 Scamp2 ENSRNOG00000019136 ENSRNOT00000066923 2 1 1 80 8 62360034 62360052 GACTTCTCCACGGAGATCC 59 62360095 62360691 AGTCACTGAATGCAACATCC 59 NA Rattus norvegicus 81 Flrt1 ENSRNOG00000022428 ENSRNOT00000030625 2 1 1 60 1 222348931 222348949 CTGTTTACCCTCAAGGCCA 60 222348889 222348909 GGTAGTCAATGTTGGAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdzd8 ENSRNOG00000009460 ENSRNOT00000068082 3 1 1 86 1 280485670 280496133 GCTAGAATGTAGCAGGTTACTC 59 280485605 280485623 CAAACACCACTGCTTAGCT 58 NA Rattus norvegicus 81 Tada2b ENSRNOG00000027326 ENSRNOT00000037061 3 1 1 276 14 79446081 79446100 AAGAAGTACTGCGTGTACTG 58 79454046 79454064 CAACATGAGCAGCCATGTC 60 NA DesignNoJunction Rattus norvegicus 81 Cnot11 ENSRNOG00000023220 ENSRNOT00000031352 1 1 1 80 9 46277528 46277546 CCGAGTATTTCTCGGTCCT 59 46277589 46279442 CCACAGCTGTAGTTAGTCGA 59 NA Rattus norvegicus 81 Mei4 ENSRNOG00000023794 ENSRNOT00000037530 2 1 1 80 8 89434325 89487281 TATAAACAGGTTCCAGGTGC 58 89487322 89487342 ATAGACTTCCTCAACAAGCTG 58 NA Rattus norvegicus 81 Oosp1 ENSRNOG00000020998 ENSRNOT00000028498 3 1 1 83 1 228033092 228050081 TTCTGCACAGTCGGTATCC 60 228033027 228033047 TATCTACTGCCCATTCAGGAG 59 NA Rattus norvegicus 81 Olr338 ENSRNOG00000048005 ENSRNOT00000016484 1 1 1 60 1 229108253 229108271 GCAATGGCTTATGATCGCT 59 229108292 229108313 TCATTGTGGTGGTATAATGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0058.1 ENSRNOG00000056345 ENSRNOT00000079966 1 1 1 60 7 5624614 5624634 TTACATCTGCTTGTATCCCTC 57 5624656 5624674 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hus1b ENSRNOG00000055922 ENSRNOT00000086985 2 1 1 60 17 35424473 35424492 CGTGAGTGTTTATCTGCCTG 59 35424515 35424533 ATTTGCCATCCTTTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0942.1 ENSRNOG00000026659 ENSRNOT00000031629 3 1 1 60 7 93517532 93517551 GAGTTGTTCCAGCTAATCGG 59 93517573 93517592 CCAATGTAACCTTGACACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 3 2 2 80 13 94101523 94101541 ATTGTGGACAAACAGCACG 59 94050508 94101481 GACACCGAGTTCTTTCATCTG 59 NA Rattus norvegicus 81 Rpl10a ENSRNOG00000000505 ENSRNOT00000000603 3 1 1 80 20 7910475 7910676 GATGAAGAAGGTGCTGTGTC 59 7910717 7910737 AGGTGGATGTTGTAGACTAGC 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000074299 2 1 5 80 1 87904395 87906070 GCTTTCACTGAGTCTTGCC 59 87906114 87906132 CTCATAACCATCCAGGGCT 59 NA Rattus norvegicus 81 Git2 ENSRNOG00000001190 ENSRNOT00000045946 2 1 1 80 12 47611032 47611050 TAACTGAGACAACCGTCGT 59 47611093 47612057 CTAATTTCTGTCTGCCCTGG 58 NA Rattus norvegicus 81 Serpini1 ENSRNOG00000010248 ENSRNOT00000013904 3 1 1 80 2 174107440 174107459 TCCAAAGCTGTTCACAAGTC 59 174107500 174109768 AATTGCAATCATTCCTGAGGC 60 NA Rattus norvegicus 81 Mgp ENSRNOG00000005695 ENSRNOT00000007577 1 1 1 80 4 170857599 170858603 AATCCTATGAAGTCAGTCCCT 58 170857539 170857557 CTTTAGCGTGCCATCTCTG 59 NA Rattus norvegicus 81 Mcm2 ENSRNOG00000016316 ENSRNOT00000022231 3 1 1 80 4 120833994 120834758 TGATATGTGCAAAGAGAACCG 59 120833934 120833954 AAGTATGCCAACACATGTTCC 59 NA Rattus norvegicus 81 Magebl1 ENSRNOG00000043508 ENSRNOT00000067446 2 1 1 109 X 60940902 60942813 CTCTGGTCAATGTTCTTGGG 59 60940706 60940724 TATGGTCAGGAGAGTTGGC 59 NA InUTR Rattus norvegicus 81 Ctsm ENSRNOG00000030276 ENSRNOT00000045830 1 1 1 80 17 3823198 3823216 GAAGGACAGATGTTCCGGA 59 3823260 3823279 GCCTTGAGGTCTAGAGCAG 60 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408,ENSRNOT00000050010 1 2 2 80 1 224340362 224343631 TTTGCACCTCAAGAAATGGA 58 224340301 224340320 AGCAGCATAACTTAGAGCAG 58 NA Rattus norvegicus 81 AABR07036648.2 ENSRNOG00000050234 ENSRNOT00000072562 2 1 1 60 12 52630850 52630868 GGGACACATCTGTAATCCC 57 52630890 52630910 CTAATTTCGAACTTGTGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps45 ENSRNOG00000021173 ENSRNOT00000028751 1 1 1 80 2 198184041 198184612 TCATGGATAAAGAGACGACTG 57 198183981 198184002 CGAAGAGGTATACTTCCTTCTG 58 NA Rattus norvegicus 81 AABR07002094.1 ENSRNOG00000046802 ENSRNOT00000072667 1 1 1 60 1 66389688 66389707 CATTGGCTGATTACCATGTC 57 66389730 66389748 CAAAGGGACTGAGTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rimkla ENSRNOG00000008625 ENSRNOT00000011586 1 1 1 80 5 138521792 138523767 CAACTGCTTTCTAGGTGGTG 59 138521731 138521749 ATGTTGGACACCTGGATCG 60 NA Rattus norvegicus 81 Olr1233 ENSRNOG00000051518 ENSRNOT00000081759 1 1 1 60 4 1447813 1447831 TGAAGCCAATGAGGATGGA 59 1447851 1447873 GTCAGTCCCATAAGAATGAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr354 ENSRNOG00000061455 ENSRNOT00000075730 1 1 1 60 1 230031120 230031138 GGTGGACTGTGTTTATGCT 58 230031161 230031180 TCCTGTAAGAAACCCTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000075883 2 1 2 85 7 115979242 115979262 TCAGAATCCAAGGAAGAAAGC 58 115978563 115979196 GTGTTACAGCTGTCTACCTG 58 NA Rattus norvegicus 81 Prl8a2 ENSRNOG00000017048 ENSRNOT00000022923 1 1 1 80 17 39572903 39572924 TGCTGAGCAAATACATGAAGAG 59 39571287 39572123 CTATACATGCGTGCAACCAG 60 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990 1 1 2 80 1 222530198 222530216 TGTCTTTCAGGTTTGCCAG 58 222527637 222528249 CTACCACGTGAGGTCTGAG 59 NA Rattus norvegicus 81 Mageb18 ENSRNOG00000038230 ENSRNOT00000039605 3 1 1 169 X 61231638 61232010 GTTTGTCAAGGGTGACCTC 58 61231487 61231507 CAAAGAAAGGACTTGGAGAGG 59 NA InUTR Rattus norvegicus 81 Agk ENSRNOG00000011509 ENSRNOT00000015744 3 1 1 80 4 68551142 68551161 AAGATGTACAACTGTCCACC 58 68551203 68557484 TAAAGTCCTCTTTGCTCGTC 58 NA Rattus norvegicus 81 Them6 ENSRNOG00000005929 ENSRNOT00000007773 2 1 1 60 7 115956849 115956868 CGAGTAGTACAGCACTTGTG 58 115958527 115958545 TCAAGTCTTCTGGCAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0625.1 ENSRNOG00000051030 ENSRNOT00000076040 1 1 1 60 X 61839691 61839709 CTGGAAGTGATCCACAGAG 57 61839732 61839751 CTGAAAGTGGTGGGTAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr371 ENSRNOG00000030471 ENSRNOT00000045383 3 1 1 60 1 230451284 230451307 GATCATCTTCATGTACTTACAGCC 60 230451326 230451344 TGCTACCTTGTCAGTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meox2 ENSRNOG00000006588 ENSRNOT00000008803 2 1 1 80 6 56678256 56678277 GCCCATCATAACTATCTGACCA 60 56678315 56687836 CACTTTCACCTGTCTTTCAGTG 60 NA Rattus norvegicus 81 Fgfr4 ENSRNOG00000016763 ENSRNOT00000042394,ENSRNOT00000082836 3 2 2 80 17 9991339 9991357 GGAGGAGCTGTTCTCACTG 60 9990996 9991297 ATTAGCCCATACAGCTCTGAG 60 NA Rattus norvegicus 81 Heatr3 ENSRNOG00000015459 ENSRNOT00000020793 1 1 1 80 19 19884242 19884261 GAGTCTGCTTTGCTTTGTCC 60 19881602 19884200 TAGGTTCCAGATTGTGCCTG 60 NA Rattus norvegicus 81 Ndufaf6 ENSRNOG00000040040 ENSRNOT00000061569 1 1 1 80 5 24297307 24299993 TTCAGACGGTTTCTCTAGAGG 59 24297247 24297266 TCTGCTGTAAAGACGGATGG 60 NA Rattus norvegicus 81 Mrps33 ENSRNOG00000026528 ENSRNOT00000039067 2 1 1 80 4 67610527 67610545 GTACCCGAATCACAACACG 59 67607614 67610485 AAGTCCTGATGCTCATCTCTG 60 NA Rattus norvegicus 81 Ubqln3 ENSRNOG00000023833 ENSRNOT00000032587 2 1 1 109 1 169333743 169334041 CACAGCAGATTGCTGTGTC 60 169333652 169333670 GCTGGGAATCCTGTACTGG 60 NA InUTR Rattus norvegicus 81 Rn60_X_0636.4 ENSRNOG00000048066 ENSRNOT00000072905 1 1 1 60 X 63002141 63002159 ACAAGTACAGCACAGTCCC 60 63002099 63002119 CTGTTGGTAGCCTTACTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 3 2 2 80 20 6895461 6895591 TCCTCTGGTGATCAAGACAG 59 6895633 6895652 TCTGTGACTTCAGGGTACTG 59 NA Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000082665,ENSRNOT00000065328 1 2 2 80 15 40577652 40577670 AGAGTACGAGAGGATGGGA 59 40577710 40580281 TAAGTCTCACAGACCTTGTACTC 59 NA Rattus norvegicus 81 LOC100910363 ENSRNOG00000058097 ENSRNOT00000086631 3 1 1 60 2 35192167 35192187 GTTTCTTGTACACAGTGATGG 57 35192127 35192148 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218,ENSRNOT00000067037 1 2 2 80 13 88638291 88638309 TAACAAGACTGCTGAGGCC 60 88637362 88638248 TGGACTGACCTTTCATCCTC 59 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000085856 1 1 3 60 5 48084773 48084791 AAGGGATTTAGAACGCAGG 58 48084731 48084752 AGTCATCTCAGTAATAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias1 ENSRNOG00000034272 ENSRNOT00000066009 1 1 1 80 8 67809843 67809863 CACAAGAAGATCACTTCCCAC 59 67808999 67809802 TAGGTGGAAGGTAACCTGGA 60 NA Rattus norvegicus 81 AABR07004984.1 ENSRNOG00000049516 ENSRNOT00000075518 2 1 1 80 1 173124914 173124932 TGGAGGATGGGAACTACAC 58 173124851 173124873 AGAGGATGACTCTAAGAACTGG 59 NA Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 1 1 1 60 1 247473676 247476488 GAAGATTCACAAACCCAGGC 60 247473635 247473654 GACTGAGATTCCCAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1169 ENSRNOG00000047916 ENSRNOT00000071855 3 1 1 60 8 20358343 20358365 GCCCATCTTATTTGTACTGTTCC 60 20358384 20358403 GAGCACATTTCCAAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100g ENSRNOG00000004222 ENSRNOT00000005622 2 1 1 85 X 33443612 33443630 AAGAAGGCGATCCAAACCA 60 33443679 33445509 ACTTGAAGCCTTCAGGAGG 59 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000013114,ENSRNOT00000065555 1 2 2 60 10 84982900 84982919 GGATCTTAAAGAGCGTTCCT 57 84983676 84983696 AGAATGGTGTCATCAATGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mir509 ENSRNOG00000054747 ENSRNOT00000077913 1 1 1 60 X 155317214 155317236 GGTTCTTTACTCCAGAATATGGC 59 155317255 155317274 ACTGCAGACATGTCAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir509 ENSRNOG00000054747 ENSRNOT00000077913 3 1 1 61 X 155317225 155317244 CCAGAATATGGCAATCATGC 57 155317268 155317286 ATGTGTTACTCCACTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214,ENSRNOT00000088676 1 2 2 81 1 80178584 80178603 GTCCAGATCTACCACAACCC 60 80178447 80178540 TGATAACCACCTGCTGGTC 59 NA Rattus norvegicus 81 Ccdc153 ENSRNOG00000039086 ENSRNOT00000084030,ENSRNOT00000059776 2 2 2 80 8 48571693 48572556 AGAATTCAAGTCCTGGTGTG 58 48572599 48572617 CTAAGTGGTCCTGAAGCAG 58 NA Rattus norvegicus 81 Dnd1 ENSRNOG00000016894 ENSRNOT00000022685 2 1 1 81 18 29610144 29610162 CCCTCTCAAATTGCACTGC 60 29609445 29610099 GTGACTGCCCTTCTACCAG 60 NA Rattus norvegicus 81 Tmem104 ENSRNOG00000025669 ENSRNOT00000055037 2 1 1 80 10 103753662 103777384 GATTTATCTGGCCATCTTCACC 59 103777425 103777443 AGGATCTGCAGGTACTTGG 59 NA Rattus norvegicus 81 Rbks ENSRNOG00000004710 ENSRNOT00000006452 2 1 1 83 6 26096557 26098865 GAGAGTGAGGCTGAGATCC 59 26098912 26098930 CCGTTCTAGGAGAACCAGC 60 NA Rattus norvegicus 81 Sash1 ENSRNOG00000013160 ENSRNOT00000017688 2 1 1 80 1 2817586 2817606 AAACTCTACCCGAAGAGTCAG 59 2812298 2817544 TGTTCCTCTCCACCTTCTG 59 NA Rattus norvegicus 81 AC141516.3 ENSRNOG00000061814 ENSRNOT00000083415 3 1 1 81 11 87276611 87276963 GAAGTGGCATTCAAAGGCTC 60 87277005 87277025 CGTTGTCATTCTCAGACATGG 59 NA Rattus norvegicus 81 Fam131b ENSRNOG00000017149 ENSRNOT00000059447 3 1 1 80 4 71710411 71710431 CGATCAGATCAACATGGACAG 59 71710081 71710369 TCTGTTCGTGTTTGCTCTG 58 NA Rattus norvegicus 81 Pabpc1l ENSRNOG00000012750 ENSRNOT00000055172 2 1 1 80 3 160431461 160431480 ATAGTTCTGCCTCCATAGCC 59 160431523 160432260 GAGGGCAGGTAGATGAAGG 59 NA Rattus norvegicus 81 LOC100910363 ENSRNOG00000057610 ENSRNOT00000090325 1 1 1 60 2 35398732 35398755 CATTCTTCTCACTATTGTCTCCTC 59 35398695 35398714 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910363 ENSRNOG00000057610 ENSRNOT00000090325 3 1 1 60 2 35398532 35398552 GTTTCTTGTACACAGTGATGG 57 35398492 35398513 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 1 3 3 80 12 8101781 8101799 TCTCACCCAAGAACATGGA 58 8101842 8102178 TGATAAGAACGGCTAGGAGG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 2 3 3 80 12 8091945 8091966 ATTTGTGAAAGGCTCCATTGAG 60 8092006 8094725 ACGTTTGTGTCATTGTTCCC 59 NA Rattus norvegicus 81 N4bp3 ENSRNOG00000045965 ENSRNOT00000075465 2 1 1 131 10 37092762 37093266 TTTACTCAGGTGCTCGAGG 59 37092649 37092667 CATAAACAGCTGCAGCTGG 60 NA Rattus norvegicus 81 AABR07061003.1 ENSRNOG00000038336 ENSRNOT00000031103 2 1 1 60 4 102592994 102593012 CCTGCTTATCAGCATTGGA 58 102593036 102593054 TACCAGGCTCTGACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Palm2 ENSRNOG00000025558 ENSRNOT00000030913 2 1 1 80 5 74766742 74767758 ACTTGCAGAAGAGTTTCTCC 58 74786182 74786203 CTCCTGTTTGTTTGTCTTTCTC 58 NA Rattus norvegicus 81 Prdx2 ENSRNOG00000003520 ENSRNOT00000004799 1 1 1 81 19 26085708 26085726 CTGAGGACTTCCGAAAGCT 59 26085771 26086644 GTATTGATCCAGGCCAGGT 59 NA Rattus norvegicus 81 Zfp869 ENSRNOG00000033351 ENSRNOT00000015611 1 1 1 80 16 21447026 21447489 CTGAAGTAAATCTAAGGGACATCG 59 21447527 21447546 GCGGCTTCTCTTCATATTCC 59 NA Rattus norvegicus 81 Cbx8 ENSRNOG00000048113 ENSRNOT00000073337 1 1 1 121 10 108149637 108149753 TTGAAGAAAGGGAACGGGA 59 108149126 108149146 GTCGCTTCTGAATTCATAGGT 58 NA Rattus norvegicus 81 Klc2 ENSRNOG00000020299 ENSRNOT00000041238 3 1 1 85 1 220495619 220495764 CAAGAACAACCTGGCTTCC 59 220495552 220495570 GAGCACGGGTAAGGATCTC 60 NA Rattus norvegicus 81 Myot ENSRNOG00000047186 ENSRNOT00000070817 2 1 1 80 18 35577344 35577365 TTCTATATTACCGTCTCAGCCT 58 35577403 35581416 ACTGAGGATTGTTGATAGTTGG 58 NA Rattus norvegicus 81 Trim41 ENSRNOG00000002388 ENSRNOT00000003246 3 1 1 80 10 34161499 34161519 ACTTAGGAAGCATCTAGAGGC 59 34158405 34161458 TTCATCTGGCTCTTCAGCTC 60 NA Rattus norvegicus 81 Ccl1 ENSRNOG00000021851 ENSRNOT00000031360 1 1 1 80 10 69535230 69536624 ACCCAGCTGTAATATTCAGG 57 69535169 69535188 TCAGGTAATCTTGAACCCAC 57 NA Rattus norvegicus 81 Map4k1 ENSRNOG00000020505 ENSRNOT00000027837 2 1 1 80 1 87947066 87947203 CTGACACTGTTCTCTTACAGC 59 87947333 87947352 AGTCGTCATCAGAGTCTGAG 59 NA Rattus norvegicus 81 Mgat5 ENSRNOG00000003614 ENSRNOT00000004995 3 1 1 80 13 44146977 44146997 GAGCCGTATATGCCATATGAG 58 44147039 44155061 GCAGAAGTCCTGTTTCTCG 59 NA Rattus norvegicus 81 Rnf31 ENSRNOG00000019438 ENSRNOT00000026333 2 1 1 80 15 34280034 34280302 ACGCCAAGAATAAATGTCCA 58 34280345 34280363 AGAAGAGGCAATCTCGAGG 59 NA Rattus norvegicus 81 Gna12 ENSRNOG00000001235 ENSRNOT00000001654 2 1 1 80 12 15890526 15934049 AACATCCTTAAGGGCTCGA 58 15934093 15934111 CTTCTCGTTCTCAGAGTGC 58 NA Rattus norvegicus 81 Ubxn4 ENSRNOG00000003625 ENSRNOT00000004878 1 1 1 80 13 44967799 44967820 CTTTGGAAGTAATAGCAGGGAG 59 44967860 44971125 TCAATGAGTGCATCTGTTGG 59 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000014637,ENSRNOT00000085613 1 2 2 80 6 27559347 27559366 AACAGACTGAGGAAGGATGG 59 27555906 27559306 CACAATCATAGCATGACCCTG 59 NA Rattus norvegicus 81 Prdx4 ENSRNOG00000003763 ENSRNOT00000005014 3 1 1 80 X 43506798 43506817 AAGCCTTCCAGTACACTGAC 60 43510822 43512895 GATCTGGGATTATTGTTTCACTACC 60 NA Rattus norvegicus 81 Sec13 ENSRNOG00000010628 ENSRNOT00000014377 1 1 1 80 4 145689153 145693300 AACAATGCTCACACGATTGG 60 145689092 145689112 GGATGGTTGGTCTATAAGGCT 59 NA Rattus norvegicus 81 Olr1304 ENSRNOG00000039239 ENSRNOT00000060095 2 1 1 60 8 43234789 43234808 TTACCATGTCCTACAACGTG 58 43234748 43234768 ATCAAGCCTACACTATACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432,ENSRNOT00000077624 2 2 2 80 4 119916767 119924481 CTTGTTACCATGCAGATCTGG 59 119916707 119916726 ATCTGCACCTCTGTAGAAGG 59 NA Rattus norvegicus 81 LOC100911727 ENSRNOG00000047206 ENSRNOT00000064178 1 1 1 80 1 75244076 75244238 CTGAGCAGTTTCTTCACACC 59 75244280 75244299 TTCCTTCCTTGGAGTGTCTG 59 NA Rattus norvegicus 81 Pyroxd1 ENSRNOG00000012472 ENSRNOT00000016794 1 1 1 80 4 176571620 176571638 AGCCAAAGTTAATCTGCGA 58 176571680 176573747 GCTGTTTCTGAAATTCCTGAG 58 NA Rattus norvegicus 81 LOC100910822 ENSRNOG00000046892 ENSRNOT00000049709 1 1 1 60 8 41954269 41954288 GGCAACTTGAGCTTAATGAG 57 41954310 41954329 AGTACACGGGAGTATGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc18a1 ENSRNOG00000011992 ENSRNOT00000016193 1 1 1 80 16 22393390 22394524 AGAAGCGTGCAATTCTGAG 59 22394568 22394586 GTGGAAACTCCTTTGTGGG 59 NA Rattus norvegicus 81 Bnc1 ENSRNOG00000019770 ENSRNOT00000067423 1 1 1 80 1 143804926 143804944 CAAAGCTTCAAACCTGGGA 58 143803899 143804884 CTTACTTAGAGCATGAGCCAC 59 NA Rattus norvegicus 81 Nckap5 ENSRNOG00000021553 ENSRNOT00000038020 3 1 1 80 13 42364516 42364535 AGTCGACGAAGATGTACGAG 59 42332271 42364476 CAGTTCGATTCTATTACGTGGC 60 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 2 2 2 87 1 247871968 247876370 ATATCACTGCTGAAGAGGCC 60 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Olr221 ENSRNOG00000048930 ENSRNOT00000048699 3 1 1 60 1 170988649 170988667 GCAGATACCTACAGCACAG 58 170988607 170988625 GTGCTAGGAGGATTACCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itpka ENSRNOG00000005284 ENSRNOT00000007247 3 1 1 80 3 111551866 111551886 CTTACAGTTACAGGACCTGCT 60 111551927 111552042 TCCAGGTAAGTTCTGACACC 59 NA Rattus norvegicus 81 Sucnr1 ENSRNOG00000014039 ENSRNOT00000018767 2 1 1 60 2 150212554 150212573 GCTATCGCTGAACAAACCTC 59 150212594 150212614 GAGTACAGAGAAGATCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307443 ENSRNOG00000018141 ENSRNOT00000024536 1 1 1 80 17 42166591 42178668 CCAAATACGGTATCAAGCACAG 60 42166532 42166550 CCTGGTCGCTTTCAAACTC 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000089616 1 1 2 170 10 90349333 90349448 GCTATTTCGGAGACACAGC 59 90350652 90350670 TCGTTGGATTTGAAGCTCG 59 NA InUTR Rattus norvegicus 81 Fam167a ENSRNOG00000011316 ENSRNOT00000015055 1 1 1 80 15 46629609 46640685 CAGAAAGGAACTGGCAGAG 58 46640729 46640747 TTGTTGATGTCTCCTCGGA 58 NA Rattus norvegicus 81 Fkbp1a ENSRNOG00000008822 ENSRNOT00000012608 2 1 1 102 3 147058199 147058219 GAAATTTGACTCCTCTCGGGA 60 147058283 147060551 CACACTCATCTGGGCTACC 60 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 2 2 2 80 4 176588159 176588977 ATCTCTACTATGAGGTTCGGC 59 176588099 176588120 ACCGTCCATTAATAAGGTTTGC 59 NA Rattus norvegicus 81 AABR07073531.1 ENSRNOG00000038397 ENSRNOT00000058474 1 1 1 80 X 45596477 45596881 CATGGTAACTTCCAGGCCT 59 45596415 45596434 GATGATGTCATCCTTGTCCG 59 NA Rattus norvegicus 81 AC121415.1 ENSRNOG00000007402 ENSRNOT00000009702 2 1 1 60 2 178212427 178212445 AGCTCATCTACAAGCGAGG 59 178212385 178212405 TTATCTGTCAAGGCAATCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000004010,ENSRNOT00000083688 2 3 3 80 10 35356392 35356412 CATACCTCCTCTACCAGATGC 60 35356454 35361838 TGCTAGGCTTCAAATCCCT 59 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638,ENSRNOT00000010113 2 2 2 71 13 90706831 90706849 TCGTAGTCATTCTCGAGGG 58 90704225 90704243 CTACCAGGTACGAGCTTCG 60 NA DesignNoJunction Rattus norvegicus 81 Capg ENSRNOG00000013668 ENSRNOT00000018562 3 1 1 83 4 100414159 100414361 CTCAAGTATCGGGAGGGTG 59 100414408 100414426 GTAGAGCTTCCTGATGGCT 59 NA Rattus norvegicus 81 Xpo4 ENSRNOG00000010137 ENSRNOT00000013901 2 1 1 80 15 37863783 37870035 AAGAAGTGCTTGATAAGGACG 59 37863723 37863742 CTTGGACCAAAGTTAGCCAG 59 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188,ENSRNOT00000079598 1 2 2 80 11 47219003 47219021 ACTTCAAGGGCGGATACAC 60 47219061 47224722 GCATCTTGATATTCACACCACTC 60 NA Rattus norvegicus 81 Upp1 ENSRNOG00000004972 ENSRNOT00000006765 3 1 1 80 14 89331058 89332482 TCAGGAGGGATAGGTCTGG 60 89332524 89332544 CTCAAACTCTGGTTTGAAGCA 59 NA Rattus norvegicus 81 Timp4 ENSRNOG00000007955 ENSRNOT00000010748 2 1 1 84 4 147161202 147161221 CACGCCATTTGACTCTTCTC 59 147158826 147161155 ACTGAGAATCTGGCCAGTC 59 NA Rattus norvegicus 81 Noc3l ENSRNOG00000013965 ENSRNOT00000019056 2 1 1 80 1 257488723 257488742 TGTTTAAGGACATCACTCCC 57 257488470 257488682 GGGTTTCTTTACGAATCTTGG 57 NA Rattus norvegicus 81 Tmem159 ENSRNOG00000048250 ENSRNOT00000075003 3 1 1 81 1 189873045 189873064 CTCCAGAGACTTACAGGAGC 59 189873108 189883214 AAAGGCAACCACCTTTGAG 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 1 3 3 80 1 140853878 140854473 GGAGACAAGGAGTTTATGGGT 60 140853818 140853836 GTACTGTGCCTCCAGAGTG 60 NA Rattus norvegicus 81 Tldc1 ENSRNOG00000016224 ENSRNOT00000021743 1 1 1 80 19 52409022 52410348 TCAGAGAAAGATCAGGGCA 58 52408960 52408978 TCCACTGATCTCCAACAGG 59 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 2 2 2 80 X 44976228 44979110 TTCCAAGGACATACTAATGAGG 57 44979151 44979169 CATGTCATCAGAGCAGGAG 58 NA Rattus norvegicus 81 Mmp16 ENSRNOG00000005708 ENSRNOT00000050137 2 1 1 80 5 31679884 31688972 GACAGAAACACAATTGACTGGA 59 31689010 31689031 GATGTTGAATTTAGAGCTGCCT 59 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000065899,ENSRNOT00000006249 1 2 2 83 7 28657442 28657871 GATGTCTCTGAGGGAGCAC 60 28657377 28657397 CTTACTTCTGTCCACATGCAC 59 NA Rattus norvegicus 81 Cap2 ENSRNOG00000043350 ENSRNOT00000078992,ENSRNOT00000065742 1 2 2 80 17 18447403 18447421 CGCTAGACTGTGAGATCGT 59 18442833 18447365 GAAATTCTCTATAATCGTCACCCTG 60 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464,ENSRNOT00000012634 2 2 2 80 14 85329598 85330000 ATCTCGATCTAGGCCTTCC 58 85329536 85329557 CACTGTCATTTAATCCTTGCAC 58 NA Rattus norvegicus 81 Egflam ENSRNOG00000012058 ENSRNOT00000016722 3 1 1 80 2 56592069 56593121 CCACTTTGTCTCAAGATTCCTG 59 56592010 56592031 CCACTTCAGAATCAGAAACCAC 60 NA Rattus norvegicus 81 Spib ENSRNOG00000019660 ENSRNOT00000026599 1 1 1 80 1 100535262 100536575 ACACTTAAGCTGTTTGTACCC 59 100535202 100535222 CCATCTGAATCTGGGTAACTG 58 NA Rattus norvegicus 81 Dmxl1 ENSRNOG00000024671 ENSRNOT00000031812 3 1 1 80 18 44564457 44565184 AGAATCTCAGCAGGAAACAG 58 44565227 44565245 CAAGCAAAGAGAAGAGGCA 58 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000020774 ENSRNOT00000074580 1 1 1 97 1 87792307 87797515 AACATAAGAAACAGGTGGCG 59 87797575 87797593 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 Sema3a ENSRNOG00000023337 ENSRNOT00000034692 2 1 1 80 4 18179300 18180695 AAGGAGGAGATCAGAGTGG 58 18179238 18179257 TGAATCCTTCTTCTGCAGAC 58 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228,ENSRNOT00000072911,ENSRNOT00000072009 3 3 3 84 9 10359327 10359421 GAAGCCGGAGAAGACTCTG 60 10359261 10359283 CTGAATGCGTTAGAGATGATGTC 60 NA Rattus norvegicus 81 Pcdh17 ENSRNOG00000008970 ENSRNOT00000045882 1 1 1 80 15 67588833 67643260 TTGAACAAGAACCGGAAGAG 58 67643301 67643321 GTGGCATCCAACATCTATCAG 59 NA Rattus norvegicus 81 AC127013.1 ENSRNOG00000059373 ENSRNOT00000088728 2 1 1 81 4 155091435 155091453 TTGAGATGGATAGCAGCCT 58 155091495 155092246 GATGCAAATATGACAAGGAGGA 59 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000002151 ENSRNOT00000002942 2 1 1 80 11 57517101 57518450 CTGGTTTCACAGGAAAGCC 59 57518493 57518512 AGGCCTATGACATTCTGTCC 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 2 1 1 78 3 155103619 155105724 CATTCAGGGCATGTTCGTG 60 155105764 155105784 GAAGATGATGAGGAACAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Smtn ENSRNOG00000019451 ENSRNOT00000026481 3 1 1 80 14 83763479 83766437 TGCAACTTTAAGATGGAGCC 59 83763418 83763436 CAGAGTCTGCTCTGTTCCA 59 NA Rattus norvegicus 81 RGD735029 ENSRNOG00000019276 ENSRNOT00000026273 1 1 1 89 18 31397849 31397949 TTTGACAGATCAGGCTCCC 59 31398002 31398020 ATGAGCAGACATCCAGTGG 60 NA Rattus norvegicus 81 Podnl1 ENSRNOG00000006741 ENSRNOT00000037453 3 1 1 81 19 25241768 25241907 ACAACAAGCTTTCTGTAGCA 58 25241951 25241969 ATTTCCACCACTTCGTTGG 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724,ENSRNOT00000006832 1 2 2 80 6 7856341 7858899 GAGTCAGGAGGATAAGTTCCC 59 7858941 7858959 GAGTCACATGACCTGTCCA 59 NA Rattus norvegicus 81 Eef1a2 ENSRNOG00000012477 ENSRNOT00000016947 1 1 1 80 3 176659367 176660461 ATACAAGATTGGTGGCATTGG 59 176659307 176659325 AAGGTCACCACCATACCAG 59 NA Rattus norvegicus 81 Gcg ENSRNOG00000005498 ENSRNOT00000007356 1 1 1 80 3 48446787 48448556 GAGAACGCCAGATCATTCC 58 48446725 48446743 TGAATGGCGTTTGTCTTCG 59 NA Rattus norvegicus 81 Vom2r50 ENSRNOG00000049200 ENSRNOT00000039327 3 1 1 80 4 156484067 156484085 TAGGAGGCATTTCAACAGG 57 156484129 156494213 GAGCATAGCTGATCTGAGG 57 NA Rattus norvegicus 81 Nr3c1 ENSRNOG00000014096 ENSRNOT00000044287 3 1 1 80 18 31742701 31742720 CACTCAACATGTTAGGTGGG 59 31741714 31742660 GGTGTAAGTTTCTGAAGCCTG 59 NA Rattus norvegicus 81 Sh3gl2 ENSRNOG00000006761 ENSRNOT00000008999 2 1 1 80 5 103615249 103615267 AGTGAGTGAGAAGGTGGGA 60 103615308 103623353 GTAACATCCACTTTCCTCTCCA 60 NA Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000000995 2 1 2 81 20 1878097 1878119 CACATATAAGCAGACATGAGGAC 59 1876758 1878056 GAATGGACAACACAGACGC 60 NA InUTR Rattus norvegicus 81 Pigs ENSRNOG00000011366 ENSRNOT00000015207 3 1 1 80 10 65602888 65602907 ACATTCAGGACAAGGATGGA 59 65602946 65603449 CATTGTATACCATAATGCCACCC 60 NA Rattus norvegicus 81 Nit2 ENSRNOG00000027797 ENSRNOT00000029420 3 1 1 80 11 45465567 45465590 GATGGGAAACTGTATAATACCTGC 60 45465626 45467489 AAACAGATGGATCTTTCTGTGC 59 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 1 1 1 60 15 18516965 18521109 AGAATGATGTGCTCATGAGG 58 18516924 18516943 GTAGCAGAGCTGATGAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Doxl1 ENSRNOG00000023612 ENSRNOT00000032300 3 1 1 85 4 78566724 78566957 AAGATAAGGATTTGGTGGCCT 60 78567003 78567022 CTTAGGTGTGGTCATGTTGG 59 NA Rattus norvegicus 81 AABR07052762.1 ENSRNOG00000048599 ENSRNOT00000071292 2 1 1 80 3 74318860 74318878 GTTGCTTCCTATGCTGGTG 59 74318920 74318943 TTCATTGGACTGGAACAACAG 59 NA Rattus norvegicus 81 Olr1306 ENSRNOG00000039236 ENSRNOT00000060093 1 1 1 60 8 43283177 43283197 TGATACATCCTTAGCACAGAG 57 43283137 43283156 GCAGACAAGAGACACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162,ENSRNOT00000084505 3 2 2 84 15 39809383 39809401 CAGATTGGTACACGGTGTC 58 39809449 39819862 GGGCTTCATAGCCTTTGAG 58 NA Rattus norvegicus 81 LOC680370 ENSRNOG00000043402 ENSRNOT00000066493 2 1 1 98 X 43871257 43878749 GCATTATAGGCAATTGACGAG 58 43871179 43871197 ATGCTATGGTACTTGCAGC 58 NA InUTR Rattus norvegicus 81 Ext1 ENSRNOG00000024886 ENSRNOT00000037809 1 1 1 80 7 92606301 92610786 CAATGATGGGACAGACTTCC 58 92606240 92606258 ACGTATTCATGCAGCTCTG 58 NA Rattus norvegicus 81 Gal3st2 ENSRNOG00000022982 ENSRNOT00000038687 1 1 1 97 9 100991810 100991828 TATGTAGAGGGCCTGAAGC 59 100991889 100992401 ATGACTTTCTGCACCTCAC 58 NA Rattus norvegicus 81 Olr30 ENSRNOG00000029233 ENSRNOT00000051266 3 1 1 60 1 150225533 150225554 ATACACCCATGTACTTCTTCCT 59 150225574 150225593 ACAGAAACATAGCCCATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd15 ENSRNOG00000015002 ENSRNOT00000034282 2 1 1 80 10 62645607 62647919 CTCAGCAGGTATGCTTCTG 58 62645545 62645563 CTCAAACTCTCGAAGGGAG 57 NA Rattus norvegicus 81 Olr1086 ENSRNOG00000042262 ENSRNOT00000067342 1 1 1 60 7 13698715 13698734 ACAGTCATTCTTCTTTGGGT 57 13698757 13698775 TAAGTTGCCTGTGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000071932 3 1 3 80 11 45888333 45888351 ACCACCGACTACAAGAAGC 60 45899629 45901364 CATAGACTCTCAGACTCAGGC 60 NA Rattus norvegicus 81 LOC100362690 ENSRNOG00000046489 ENSRNOT00000030635 1 1 1 80 8 38240254 38240901 GGCTTCCTACAAGCTTTGAC 59 38240940 38240962 ACAGGTAGAGTATCCTTTCTCAC 59 NA Rattus norvegicus 81 LOC100910575 ENSRNOG00000048985 ENSRNOT00000074673 1 1 1 80 4 173118784 173118803 ATTACCTGTTGACTGGAGGA 58 173118845 173120419 TAATTTCCTTGGGTTCTGCT 57 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 1 2 2 80 5 24454644 24457632 CATTTACTTTGCCACCAACC 58 24454583 24454602 TTGAAGAAGTCAGAGCACAC 58 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202,ENSRNOT00000051910 2 2 2 80 2 61406109 61406718 AATACACAAGAATTCCTCCACG 59 61406050 61406073 GGGAATGAAATCCCATAAATCCTC 60 NA Rattus norvegicus 81 Rbp7 ENSRNOG00000015850 ENSRNOT00000021348 3 1 1 82 5 166280680 166280700 ACTTGTGTACAGAAAGGAGAG 57 166278443 166280636 CAGAACATTTCCAGGTGGA 57 NA Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378 3 1 2 80 6 73385828 73385847 ACAGCTGAGAAGCCTATACC 59 73385886 73396579 TAGTCCTTCGGTACATAATCCTG 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037372 2 1 2 94 10 15242317 15242545 TGTTGATCACCTATGGGCC 60 15242601 15251704 TCTTGAGAACCTGCATCTGAG 60 NA Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 3 2 2 80 1 100856290 100856309 CTAGATGGGACCCTCATCAC 59 100856351 100856455 CTCTGGGTACAGAATCCTCC 59 NA Rattus norvegicus 81 R3hdm1 ENSRNOG00000004099 ENSRNOT00000005372 2 1 1 80 13 44893750 44896094 ATTCTCCCAAGACTCCCTG 58 44896220 44896239 TGGGTACCAATAGTGTCCTC 59 NA Rattus norvegicus 81 Rabep2 ENSRNOG00000018462 ENSRNOT00000025043 2 1 1 80 1 197853988 197854006 CACTAGACGAGGAGACAGC 59 197854050 197854177 CCTCCAGCACATCTGTCTC 60 NA Rattus norvegicus 81 Kdm4d ENSRNOG00000045905 ENSRNOT00000071532 1 1 1 60 8 13512841 13512860 CTATTGGAACAGGAATGCGG 59 13512800 13512818 CAAAGTACAGGTAGGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtmr9 ENSRNOG00000011560 ENSRNOT00000015452 1 1 1 80 15 46715538 46715559 GTTTGAAGTGATTGAAGATGGC 59 46712517 46715499 CATTCACTGGTAGCAGAAGAG 59 NA Rattus norvegicus 81 Csnk1g3 ENSRNOG00000016677 ENSRNOT00000022792 2 1 1 80 18 48865663 48865681 CCCATGAAATCCAGAGCAC 59 48865725 48868856 AGAGGAAATGCCATCTCCA 58 NA Rattus norvegicus 81 Prss16 ENSRNOG00000057865 ENSRNOT00000086540 3 1 1 80 17 44557163 44557310 CAGTAATGACAGGGCATCC 58 44557352 44557372 GACCATAGAATCTGTGTTCCA 58 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 2 1 1 60 X 48779565 48792366 GATTGGCAGATCGCTACTC 58 48792389 48792408 ATGCAATGAGTATGATGGCA 58 NA DesignNoJunction Rattus norvegicus 81 Tmem252 ENSRNOG00000025476 ENSRNOT00000035123 3 1 1 81 1 242572811 242572831 ACAAAGAGATGTTCAACCACG 59 242572874 242576100 AAGTCAGGCCTGTCTACAG 59 NA Rattus norvegicus 81 Rwdd2a ENSRNOG00000009599 ENSRNOT00000012864 3 1 1 94 8 94244343 94244361 TAAAGAGGTACCTGGACGG 58 94244419 94245461 ATCAATTGTCACCTTGGGC 58 NA Rattus norvegicus 81 Rph3al ENSRNOG00000061429 ENSRNOT00000081725 1 1 1 80 10 63993767 64013761 GAGGGAGAGTGGTTTCTAGTG 60 63993707 63993725 CAGAGGGCATAGGTCTGTC 59 NA Rattus norvegicus 81 Retnlb ENSRNOG00000032187 ENSRNOT00000046890 2 1 1 82 11 54565725 54566260 TCCTGTTGGGATGGTTGTC 60 54565661 54565680 AGTGGCAAGTAGTTCCATCC 60 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000049216 ENSRNOT00000071160 2 1 1 61 1 121201294 121201313 AGGCTGCTGGTTATATTCCA 59 121201252 121201270 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam170a ENSRNOG00000015834 ENSRNOT00000039379 2 1 1 91 18 45026127 45026924 TCCATCGTAGTAAGGGAACC 59 45026978 45026996 AATAGTGGCCTCTCCTTCC 59 NA Rattus norvegicus 81 Entpd1 ENSRNOG00000014574 ENSRNOT00000054719 1 1 1 80 1 259801905 259802915 GACATTCAGGTTTCAAGTGG 57 259802957 259802976 TTCGCTTACATTCACAACCT 58 NA Rattus norvegicus 81 Prl3b1 ENSRNOG00000017185 ENSRNOT00000023086 1 1 1 80 17 42776100 42777143 TCAACCATGCTTCTCTGGG 60 42776038 42776056 TTTGGTGCAGAAGTCACCT 60 NA Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000034289 3 1 2 80 6 95480925 95481762 CTTCACGGAGACCAGACTG 60 95480863 95480882 AGGGAGACAAGGATTAGCTG 59 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 1 1 1 64 5 25168668 25172435 GTACAAACTTGGATGAGGCT 58 25172462 25172480 ATGGTGATCCACCATCACC 60 NA DesignNoJunction Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107,ENSRNOT00000073209 3 2 2 80 10 59669093 59669112 AATTCAGCAGTCCTGTATCG 58 59669153 59669914 CATAAGGATGTGCTCTACTGG 58 NA Rattus norvegicus 81 Nppa ENSRNOG00000008176 ENSRNOT00000011005 3 1 1 105 5 164808509 164808527 CTTCTTCCTCTTCCTGGCC 60 164808593 164808718 GTCTAGCAGGTTCTTGAAATCC 59 NA Rattus norvegicus 81 Lama5 ENSRNOG00000053691 ENSRNOT00000081226 2 1 1 80 3 175569641 175569660 TTGGATGTTACGGACAACGA 60 175569180 175569600 GACAAGTATGTAGTCCAGCCA 60 NA Rattus norvegicus 81 Emc2 ENSRNOG00000005123 ENSRNOT00000006890 3 1 1 80 7 82368722 82377027 AAACAGGGCTTATCAGTTTGC 60 82377066 82377087 GTCTCCAACATGTCTTCAACTG 60 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 2 2 2 80 13 98453787 98454009 GAAGTGCGGAATGAGATCTG 59 98453726 98453744 GTCAGTCTGCATGACATGG 59 NA Rattus norvegicus 81 Ly6d ENSRNOG00000026133 ENSRNOT00000036268 3 1 1 84 7 115994026 115994045 TCAGCAGTGACAACTGTAGG 60 115993814 115993979 TTCAGAGGCTCCACTTTGG 60 NA Rattus norvegicus 81 Tmem198b ENSRNOG00000006827 ENSRNOT00000008929 2 1 1 92 7 3226068 3226212 CCAGCTCCAAGTTATCAGC 58 3225994 3226012 AGAATCAAGGTCCAGGACG 59 NA Rattus norvegicus 81 Armc8 ENSRNOG00000014521 ENSRNOT00000019536 2 1 1 80 8 107751212 107751230 ATGGACCGAATTGTGACTG 58 107750847 107751171 GGATAAACTGTGCAAACATCTG 58 NA Rattus norvegicus 81 LOC102555919 ENSRNOG00000022971 ENSRNOT00000039827 2 1 1 86 10 36365081 36371567 TTGTTCTGGGAGGGATGAC 59 36365013 36365034 CCGTAATCCATTGATCTGATCC 59 NA Rattus norvegicus 81 Aoah ENSRNOG00000054964 ENSRNOT00000087838 1 1 1 80 17 45895691 45901120 GATGTTTGTAATGGGAGAGCTG 60 45895632 45895651 CAGAGTCTGCATGACATTGG 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 3 1 1 60 2 111061157 111061179 GCTGTAGTAATGACATACTGGAC 59 111059908 111061139 GAACTGGTTGATTTGGGTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000080654,ENSRNOT00000010377 2 2 2 60 4 78074629 78074647 GAGATGAGAGCACACTGCA 60 78073846 78073865 ATACCTTCTTTCTGGCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 3 2 2 80 18 51574550 51574571 ACATATTCGTTTCCTTGCTGTC 59 51574609 51574718 CACTTGTGTTCTCTAAGTGTCC 59 NA Rattus norvegicus 81 Tmem150a ENSRNOG00000061100 ENSRNOT00000079415 3 1 1 81 4 100218840 100219259 GCATATGGACTGTGTATGCC 59 100219566 100219586 GAGCAGGAATCATTGTAGGAC 59 NA Rattus norvegicus 81 LOC100911547 ENSRNOG00000048711 ENSRNOT00000072882 3 1 1 60 8 21033860 21033882 GCCCATCTTATTTGTACTGTTCC 60 21033901 21033920 GAGCACATTTCCAAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map6 ENSRNOG00000027204 ENSRNOT00000034389 3 1 1 97 1 164227993 164271772 TCCTACAGGAACGAATTCAG 57 164271831 164271850 TGAACCATCTTGTCATCTGG 58 NA Rattus norvegicus 81 Cdip1 ENSRNOG00000003328 ENSRNOT00000004999 2 1 1 231 10 10986705 10986725 CTTATCCAGGAGGTCCTACAG 59 10987158 10987776 GGAGGGTAGAAACCTGCAG 60 NA DesignRelaxed Rattus norvegicus 81 Mtif2 ENSRNOG00000004161 ENSRNOT00000005834 1 1 1 80 14 113958084 113958103 CTCCTGGCTTATGATGTGGT 60 113958143 113960019 GTTCTTTCCTGTTAGTGCAGAG 59 NA Rattus norvegicus 81 Prss53 ENSRNOG00000026040 ENSRNOT00000035672 3 1 1 80 1 199334159 199334296 GAACACCAGTGATGTTTCCAG 60 199334099 199334120 TTGTAGAGACAGTTACAGGTGG 60 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097,ENSRNOT00000042754 2 2 2 80 11 57478684 57478702 AAACGTGGAAGAAACGCTG 59 57478744 57480864 ATTTAGCCTCATGCTTGTCTG 59 NA Rattus norvegicus 81 LOC687679 ENSRNOG00000032232 ENSRNOT00000050931 2 1 1 60 1 91588480 91588499 GCATGTACAAGGAATACTGC 57 91588439 91588457 ACACTCATCAATCACGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub1b ENSRNOG00000007906 ENSRNOT00000010406 3 1 1 80 3 110387771 110387790 TGTGACATCTGTACCCAGTG 60 110387832 110389690 CATGGCGTCATTACTGTCTG 59 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000088770 3 1 2 66 19 41010090 41010108 CAACCCTGAGGATTCCCTG 60 41004668 41004686 TGTTTCCTTTCACTTGCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 1 3 3 80 5 151051031 151052226 CATTTGACAGCCATGAGGAG 59 151050970 151050990 TAAGTTCCAGGTCTTGCTCAG 60 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 2 2 2 80 3 138385450 138385470 CTTTCTTCTCACCCTGTTCTC 58 138384536 138385409 CCGCCTAACACTTAGATCCT 59 NA Rattus norvegicus 81 Sbsn ENSRNOG00000021015 ENSRNOT00000028526 2 1 1 87 1 89204360 89204378 GAAATGAACAGGTTGCAGC 58 89204429 89205736 CTTGATGAGGCCCATTCAG 58 NA Rattus norvegicus 81 Stub1 ENSRNOG00000019798 ENSRNOT00000026921 3 1 1 88 10 15198453 15198656 CCAAGCACGATAAATACATGG 58 15198299 15198319 CAAGTAGTCAGGGATATCTCG 57 NA Rattus norvegicus 81 Gtf2e1 ENSRNOG00000026008 ENSRNOT00000042864 2 1 1 81 11 66083156 66083175 CCTTCAAATGTCCTGTCTGC 59 66083219 66096175 CGGAAAGTTCCTGTCATGG 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 2 3 9 101 20 2087659 2087971 AGTTCTGAGCACTTGAAAGC 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 LOC100910965 ENSRNOG00000051156 ENSRNOT00000076565 3 1 1 60 7 116585549 116585568 CTGTGAGGTATGTGGACAGG 60 116585591 116585609 GATCTTGTGATGCTGTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hook2 ENSRNOG00000003682 ENSRNOT00000035987 3 1 1 80 19 26118542 26118564 CCAGAATTCCATACTCTAAGGTC 58 26118601 26118689 ACTCTTCTCATAGTCCATCTCC 59 NA Rattus norvegicus 81 Fhl5 ENSRNOG00000007680 ENSRNOT00000046595 1 1 1 94 5 39571657 39574803 GTAAGAAGGTGATAACTTCTGGTG 59 39571586 39571605 ATAAAGCTCTTTCCTGCAGC 59 NA Rattus norvegicus 81 LOC100912474 ENSRNOG00000045635 ENSRNOT00000071521 2 1 1 60 1 103681984 103682003 TATCCCTGAGGAAGAAGGTG 58 103681943 103681962 ACTGCTCTGTACTCGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supt5h ENSRNOG00000032034 ENSRNOT00000048905 1 1 1 80 1 85450371 85450688 GACGGTCAAGTGTAAGATTGG 59 85450730 85450748 TCTGTGAACTGGTAAGCGA 59 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 2 2 2 80 19 674658 674677 GTCCTGTACCTAATGTTGCG 59 674714 678096 AACTTGATAGTTAGATACTCCTGGG 60 NA Rattus norvegicus 81 Rn60_X_0598.1 ENSRNOG00000031719 ENSRNOT00000046065 3 1 1 60 X 59149706 59149724 AATACATTGAACGGCTCCA 57 59149748 59149766 TGTGAGCCATCTGATTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3hav1 ENSRNOG00000013948 ENSRNOT00000018782 1 1 1 80 4 66036068 66036087 CAAGAACTCCACCCATACCT 59 66035744 66036026 CGTAGGAGATACTCATCGGG 59 NA Rattus norvegicus 81 LOC100911545 ENSRNOG00000045772 ENSRNOT00000075799 2 1 1 80 4 154461901 154461921 GGAGTAGAAGATGAAGTCACC 58 154461963 154462886 AACAGGATGAGTGACAGGA 58 NA Rattus norvegicus 81 LOC683581 ENSRNOG00000049827 ENSRNOT00000075529 1 1 1 60 2 165835736 165835754 GCAAGCCCACATTCTTCTG 60 165835774 165835796 CCTGTAAAGCAGAGTAGATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl11 ENSRNOG00000007335 ENSRNOT00000009756 2 1 1 81 10 69435009 69435028 CCACAGCACTTCTATTCCTG 58 69435072 69438322 GAAGTTGGGATGGAACCTG 58 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000023477 3 1 2 80 1 211255804 211255823 ACACCACAAGATACCAACAG 58 211251535 211255764 ATAATCTTCCTCAGACAGAGTG 57 NA Rattus norvegicus 81 Rgs4 ENSRNOG00000002773 ENSRNOT00000003774 3 1 1 80 13 88057825 88058138 CTGATTAACCATGAATGTGGAC 58 88057766 88057785 CCAGAAGTCAATGTTCTCCT 57 NA Rattus norvegicus 81 Mettl9 ENSRNOG00000025940 ENSRNOT00000039186 2 1 1 82 1 190985347 190990874 GAAGAAATACAGAGTGCTTGGT 59 190990917 190990935 CCAGCAGATTTAAGCAGCT 58 NA Rattus norvegicus 81 Olr1868 ENSRNOG00000047298 ENSRNOT00000075472 2 1 1 60 20 1323033 1323052 AGTGGCTTCTTTCTGTTGTC 59 1323075 1323093 AGGACTATGAGGAGGAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alcam ENSRNOG00000001989 ENSRNOT00000002738 2 1 1 80 11 50967557 50967578 GTTACATTAACTTGCACAGCAG 59 50967616 50969442 TTCTGGAATACTTATCGCAGAG 58 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589,ENSRNOT00000080460 3 2 2 60 10 95243366 95243385 GTGCATATACTAGCCCTGGA 59 95243407 95243426 CGGGTTTAAATTCTGGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r45 ENSRNOG00000028882 ENSRNOT00000045214 3 1 1 60 1 67134084 67134102 AGCCACCCAAACTATCCTC 59 67134042 67134065 GGATGAGAATGAGTAAGAGATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563962 ENSRNOG00000045814 ENSRNOT00000073716 1 1 1 134 2 165805259 165805277 AGAACGAGCTAGTGTCAGC 60 165815082 165815100 GCTTCTTCCTCATGGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Gpr141 ENSRNOG00000059698 ENSRNOT00000092193 3 1 1 110 17 47241539 47241559 CGAGATTATGTGCAAGTCGTC 60 47241631 47262234 TAGAGCTTGCTCCATGGAC 59 NA Rattus norvegicus 81 Ndufb4l1 ENSRNOG00000034289 ENSRNOT00000044617 3 1 1 60 14 7949524 7949543 TTAGGGCCTCTCATCTTCTG 59 7949565 7949584 GTCTTTCCTTTCTGTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000023536,ENSRNOT00000087194 1 2 2 80 9 66923355 66923374 GTAAAGAGGACTCTGTTGGG 58 66923415 66925484 ATCTTCTTCAACAAGAGCTGG 58 NA Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000091464,ENSRNOT00000017472 3 2 2 80 4 157231013 157231182 TATTCACTGTGGAAGGTGGT 59 157231225 157231243 CTTCGGCTAGGATTGTGTC 58 NA Rattus norvegicus 81 Olr1135 ENSRNOG00000049064 ENSRNOT00000073314 2 1 1 60 8 19081663 19081684 GGATTCTCTTAGAAACACAGCA 59 19081624 19081645 GAGTAAAGGAGGAACTACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 3 5 5 80 13 47430810 47430828 GATGCCACCAATACCACTC 58 47430385 47430768 CACAAAGAATACCTTGAAGGC 58 NA Rattus norvegicus 81 Olr63 ENSRNOG00000018551 ENSRNOT00000025027 3 1 1 60 1 167870562 167870580 CCTTATTGCTGTGCTAGGT 57 167870604 167870622 TAGTCTGTGCTCTGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtif3 ENSRNOG00000047329 ENSRNOT00000075162 2 1 1 97 12 9855659 9855680 ACAGATTCAACAGTGGATTGAG 59 9855735 9856652 ATATCTCATCCATCTCACTCCC 59 NA Rattus norvegicus 81 RGD1307537 ENSRNOG00000033763 ENSRNOT00000048146 3 1 1 80 17 30642150 30653577 CACCATCATTGTCAGGTGG 59 30642088 30642106 AGTGCTGACAGTCTTTGGA 59 NA Rattus norvegicus 81 LOC100361194 ENSRNOG00000033839 ENSRNOT00000048082 2 1 1 60 8 21271245 21271263 AAGATCCAGAGCATCAACC 57 21271286 21271305 ACAGTGACCACAAACATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fads2 ENSRNOG00000020440 ENSRNOT00000027756 2 1 1 80 1 226115186 226115379 TCCTCAACTTTATCAGGTTCC 57 226115126 226115147 GATCAATCTCCATGACAATGTG 58 NA Rattus norvegicus 81 Trim31 ENSRNOG00000021518 ENSRNOT00000061558 1 1 1 80 20 2148999 2150100 CTGACAGAATTCAAAGACAACC 58 2148940 2148961 TTCTTCTTTATTCAGGCTGCTC 59 NA Rattus norvegicus 81 Trim31 ENSRNOG00000021518 ENSRNOT00000061558 2 1 1 80 20 2148992 2150092 ATTCAAAGACAACCTGAAGGC 59 2148932 2148955 CTCTCCCTTTCTTCTTTATTCAGG 59 NA Rattus norvegicus 81 Ehd4 ENSRNOG00000007584 ENSRNOT00000010701 1 1 1 80 3 111915613 111915632 GAAGAGCATCAGCATCATCG 59 111892276 111915570 TGGCAGAAGTCATACCCTC 59 NA Rattus norvegicus 81 Cenpo ENSRNOG00000050111 ENSRNOT00000070979 1 1 1 80 6 28660634 28660652 ACCAAGATTCGAGAACTGC 58 28652961 28660592 AGATTCTTTAACTCTGGCTCG 58 NA Rattus norvegicus 81 Lpcat3 ENSRNOG00000012269 ENSRNOT00000017090 2 1 1 80 4 157218499 157218646 CATTGAAGCTAATTGGGCTG 58 157219081 157219100 ATTTCTGTTGCTCAGAGGAC 58 NA Rattus norvegicus 81 Rab10 ENSRNOG00000047088 ENSRNOT00000071425 1 1 1 80 6 27678166 27678184 TGTATGACATCACCAACGG 58 27674444 27678122 CATCTTCATTGGCATGCTC 57 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 2 2 2 93 8 70726809 70728709 GAAGAAGGATTCCAAGGAAATCG 60 70728756 70728780 GTTAGTGACTACAAAGTACTTAGGG 59 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 1 1 2 106 6 93440013 93440031 TGAACTAGAGCTCAGCTGG 59 93440426 93441796 CCTTCAAAGATTCCTTGGCA 59 NA Rattus norvegicus 81 Haao ENSRNOG00000031263 ENSRNOT00000045996 3 1 1 80 6 7045524 7045646 TGGGTTCTCGTACATGTGG 59 7045462 7045480 AGTGGCTTCTTACAGGCAG 60 NA Rattus norvegicus 81 Nmur2 ENSRNOG00000014081 ENSRNOT00000018967 3 1 1 80 10 41397325 41397345 TTCTTCAGCTTTGTGGAAGAG 59 41394918 41397285 AAAGAAGACACCTGATACCAC 58 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 2 2 2 61 16 19636635 19637532 GAAATGGAGTTGTGGAAAGAC 58 19636594 19636615 GAAGATTGCTTTACACTCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312,ENSRNOT00000081934 2 2 2 80 3 111422565 111422583 CTCCTTCAAGTACAGCGAC 58 111422626 111427217 CTTAACAACTTGTCTGCCCT 58 NA Rattus norvegicus 81 Mir3542 ENSRNOG00000050699 ENSRNOT00000072537 1 1 1 67 17 9636485 9636503 CTATGGTAGGGAGAGTGGG 58 9636534 9636552 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr319 ENSRNOG00000021050 ENSRNOT00000028575 1 1 1 60 1 228318198 228318216 CCCAGTTCCAGCTACTCTC 59 228318238 228318258 TGATGAAAGTGTAGACCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr319 ENSRNOG00000021050 ENSRNOT00000028575 3 1 1 60 1 228318156 228318175 GTCCTCCTACAATATGGCTG 58 228318198 228318216 GAGAGTAGCTGGAACTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cep120 ENSRNOG00000017035 ENSRNOT00000023236 2 1 1 80 18 48714559 48716082 CTTCATCAGCACAGGTTACAG 59 48714499 48714517 GGTTTCCTTGGCAGAAGTC 59 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263,ENSRNOT00000004350 3 2 2 85 13 99143917 99145149 AGTCCTCAAAGGTATGCAGG 60 99145197 99145215 TCTTTGACCTGTTAGGCCG 60 NA Rattus norvegicus 81 Tbc1d2b ENSRNOG00000014543 ENSRNOT00000030645 2 1 1 80 8 97590407 97593415 CTAAACAGGTTGGTGGCAG 59 97590345 97590364 GACTTCCACAATGGTAACGA 58 NA Rattus norvegicus 81 Rn60_7_1168.2 ENSRNOG00000051155 ENSRNOT00000076207 1 1 1 60 7 116858049 116858070 ACATCAAGCACTCAAAGAACAG 60 116858088 116858109 TTCTGATCATTCTCCTTCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tie1 ENSRNOG00000020173 ENSRNOT00000027414 1 1 1 80 5 137306829 137306851 CTAGAAGTTCTGTGCAAACTAGG 59 137306572 137306791 ATACAAGTAGCCTCGGTTCTC 59 NA Rattus norvegicus 81 Troap ENSRNOG00000060703 ENSRNOT00000089448 1 1 1 80 7 140761537 140761555 GTACTGACAGCAGGACCTC 60 140761599 140762056 TGAGGGTTAAGGAAGCAGG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 3 2 3 82 5 57447667 57448325 GTGAGTTGACTGCTGAGGA 59 57447603 57447621 AACGATGACCATGACTGGG 60 NA Rattus norvegicus 81 LOC100911999 ENSRNOG00000059901 ENSRNOT00000072049 3 1 1 60 8 41336420 41336440 GCCCTTATTTGTTCTGTTCCT 59 41336460 41336480 TAAGCACAAGTTTCCCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps41 ENSRNOG00000012940 ENSRNOT00000067636 3 1 1 80 17 48705937 48708215 GGGAACTTCCATCAAGATATGC 59 48705878 48705898 ATTTCAACGTATCGACTTGGC 59 NA Rattus norvegicus 81 Wfs1 ENSRNOG00000005108 ENSRNOT00000034730 1 1 1 88 14 78654803 78654821 AAGGCAGATGTGGAGATCC 59 78654873 78656300 TAGTGTTTGCCCACCTCTG 60 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 1 1 1 63 X 65335684 65335864 AAGGTAAGAAGGCCCAAGG 59 65335639 65335658 GGATTCTTGGTAGGGTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Eme1 ENSRNOG00000024420 ENSRNOT00000032693 3 1 1 80 10 82370333 82372315 CTGGAAGAGGATGGAGATGAC 60 82370273 82370292 GACCATGGACATGAAGACCT 60 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467,ENSRNOT00000086979 2 2 2 80 18 36835813 36835833 CTAATATGCCACCAATGCCTC 59 36835875 36838896 GCATGAATGGTGGTCTCTG 59 NA Rattus norvegicus 81 Hgd ENSRNOG00000002701 ENSRNOT00000003645 3 1 1 80 11 65991284 65991303 ACTTTGTGATCTTCCCACCT 59 65986873 65991241 CACTCATGCAGTTCCTGTG 59 NA Rattus norvegicus 81 Catsper3 ENSRNOG00000011374 ENSRNOT00000015163 2 1 1 80 17 8923496 8925221 CTCAGCCAATATAAGAGAAGGGA 60 8923438 8923457 CAGGATCTGGAACAAAGTGC 59 NA Rattus norvegicus 81 Nudt9 ENSRNOG00000002186 ENSRNOT00000002973 1 1 1 80 14 7044382 7045493 CCTATTATAACCAGGTGGAAGAG 58 7044324 7044343 GAACTGCAAGATGCATTTCC 58 NA Rattus norvegicus 81 Ints1 ENSRNOG00000047880 ENSRNOT00000001727 2 1 1 80 12 18080176 18080194 ATGATGCTGGGCATTACAG 58 18080238 18080464 TAGCACCTCGAGGTTTCTC 59 NA Rattus norvegicus 81 Tnpo2 ENSRNOG00000003970 ENSRNOT00000005571 3 1 1 80 19 26155045 26155142 AAATCAGAAGATGAACCAACCC 59 26155182 26155201 TGGGAAGCTCTGGTAATGTG 60 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 1 2 5 174 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80529951 80531281 AGTTGTTAAAGCTGTGCCG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 2 1 5 83 1 80543677 80543695 TTCCAGTGACATCCCTTCG 59 80534709 80534949 TCTCTAGTGTAGAAGACTCCCA 59 NA Rattus norvegicus 81 AC106663.5 ENSRNOG00000061438 ENSRNOT00000067997 3 1 1 60 14 86751561 86751579 GAAGGGAGACAGTTCTGCT 59 86751603 86751621 CATCACAGGTCCTGTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx2-1 ENSRNOG00000008644 ENSRNOT00000011453 3 1 1 60 6 77419789 77419807 AGCATGATTCACCTGACAC 58 77419747 77419765 TCTTGTAGCGGTGGTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm22 ENSRNOG00000007988 ENSRNOT00000010778 1 1 1 80 10 64556239 64556258 AGGAGCAGAAGATGATCGAG 59 64556301 64558624 CCAAGACAAATCCTCCCAC 58 NA Rattus norvegicus 81 Timm22 ENSRNOG00000007988 ENSRNOT00000010778 3 1 1 80 10 64556243 64556261 GCAGAAGATGATCGAGAGG 58 64556305 64558628 CCTCCCAAGACAAATCCTC 58 NA Rattus norvegicus 81 Olr365 ENSRNOG00000046596 ENSRNOT00000074432 3 1 1 60 1 230306668 230306688 TGTCCATCTTCTTTGGTTCAC 59 230306710 230306728 ATTGAGTGACTGGAACTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685391 ENSRNOG00000043170 ENSRNOT00000051812 1 1 1 133 4 82649498 82654713 GCACTAGTGATGTTCTTTCATACC 60 82649388 82649406 GGGACTAGAAGACTGCTGC 60 NA Rattus norvegicus 81 Rxra ENSRNOG00000009446 ENSRNOT00000012892 2 1 1 80 3 6292044 6293430 TCCTCTTCAACCCTGACTC 58 6293471 6293492 CTAGTGATGCATACACCTTCTC 59 NA Rattus norvegicus 81 Neb ENSRNOG00000006783 ENSRNOT00000059461 1 1 1 80 3 37679087 37679706 ACTTCAGCCTCCTTCAATACC 60 37679027 37679046 GTATTTCTGGCGTGTCTTGG 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040,ENSRNOT00000021703 2 2 2 80 17 53476879 53476897 GCTTCCAACTGACCATGTG 59 53476941 53478496 ATCTCTTCATCGTCTGCGT 59 NA Rattus norvegicus 81 Ammecr1 ENSRNOG00000022166 ENSRNOT00000042639 3 1 1 81 X 114232512 114232530 ATGTGCTCTACTGTCACCT 58 114183311 114232468 GTTACAAACAGTGGGTAGGG 58 NA Rattus norvegicus 81 Ccdc112 ENSRNOG00000003559 ENSRNOT00000004742 2 1 1 80 18 40230751 40230771 GGCCAAGATACATAACAACGT 59 40228878 40230710 AGCTTCTCAACAAAGTCAGG 58 NA Rattus norvegicus 81 Phlpp1 ENSRNOG00000002821 ENSRNOT00000003840 1 1 1 80 13 26325529 26325547 GGAACTGTATGGAGACCCT 58 26325588 26340146 GTATGTTCAGTCTTAGGTCCAC 58 NA Rattus norvegicus 81 Fgl2 ENSRNOG00000012881 ENSRNOT00000017232 1 1 1 80 4 10328687 10328706 CTCTGTGGTCAACAGTTTGG 59 10326677 10328646 AGATGTTGAACTGGATTTGGC 59 NA Rattus norvegicus 81 Rps15a ENSRNOG00000018320 ENSRNOT00000024678 1 1 1 80 1 187760805 187765292 AGGAAGGTTGAACAAGTGTG 58 187760744 187760763 AGATTGTTCTGCCACTTCTC 58 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 3 2 2 80 9 66013520 66013540 AGAAGCTATCAGAGCATTCAG 58 66009842 66013479 CTTCTTCTACAAGAGGCTGG 58 NA Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 2 2 2 80 X 128186546 128186565 TGGGACTTCTTCATCATCCA 59 128186265 128186507 CTCTCCCTTGATTTATCAGTCTC 58 NA Rattus norvegicus 81 LOC100909435 ENSRNOG00000047193 ENSRNOT00000072832 2 1 1 60 1 11758357 11758375 TCATCACTCTCACCTTGCT 58 11758393 11758417 TTCTGGAGGAAGAAATACATAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 3 2 2 90 2 189995076 189995094 TACAAGATCTGCCAGTCGG 59 189995556 189995575 TATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Lbx1 ENSRNOG00000025520 ENSRNOT00000021748 2 1 1 74 1 264974837 264974855 CCAGCAAGACCTTTAAGGG 58 264974127 264974146 CAAAGATGGTCATCCCATCG 59 NA DesignNoJunction Rattus norvegicus 81 Ralgapa2 ENSRNOG00000036964 ENSRNOT00000015637 2 1 1 80 3 140599060 140599079 TAACCAGTCGTCTCCATCTC 59 140598777 140599020 AGAGTTGTAGCCTTAAATAGCC 58 NA Rattus norvegicus 81 RGD1309621 ENSRNOG00000036913 ENSRNOT00000055437 2 1 1 81 4 183900569 183900590 CTATTGAAGAACACAAGCTCTG 58 183900632 183902130 TTCCTGAAACTTGCACAGG 58 NA Rattus norvegicus 81 Gtf3c1 ENSRNOG00000016218 ENSRNOT00000022271 3 1 1 80 1 197046711 197048152 TGAACTACAAAGTCTGCCTG 58 197046650 197046669 CGTAGTTATCCTTCCGACTC 57 NA Rattus norvegicus 81 Taar2 ENSRNOG00000025951 ENSRNOT00000035424 3 1 1 61 1 22579002 22581972 AGGAAACCTTCGATTGTTCAG 59 22578961 22578981 CAGAGACCTTTCATTCTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cyb561 ENSRNOG00000007433 ENSRNOT00000009778 3 1 1 96 10 94139207 94139552 CTACTTCATGCAGTGGCTC 58 94139129 94139147 AAAGAAAGTGTGCTGAGGG 58 NA Rattus norvegicus 81 Tmed9 ENSRNOG00000021882 ENSRNOT00000036140 3 1 1 83 17 9564897 9565072 CATGGTCATCGGAAATTACCG 60 9564834 9564852 AACATACCAAGCCCAGGAG 59 NA Rattus norvegicus 81 Gpr75 ENSRNOG00000022176 ENSRNOT00000033437 1 1 1 60 14 115276619 115276638 CACAGTTGATGCTTCCAGAC 59 115276660 115276679 ATCTCCATTTCCCTTCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681195 ENSRNOG00000031560 ENSRNOT00000048373 2 1 1 60 10 72556513 72556536 GTACTCGGTATATGTTCTCTAGAC 58 72556476 72556494 TATGTGGCCAAAGGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cysrt1 ENSRNOG00000010600 ENSRNOT00000014080 3 1 1 63 3 2459305 2459323 AAGAAGACAGACTGCTGCT 59 2458930 2458949 CTTGACAACCATCTCATGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853,ENSRNOT00000060020 3 2 2 81 12 19580692 19580842 CCTCAAGGTGCTGAATAGC 58 19580629 19580648 ATAACTGGCGTTGAAGTTGG 59 NA Rattus norvegicus 81 Tfap2e ENSRNOG00000027595 ENSRNOT00000038248 1 1 1 112 5 144747421 144760212 TCCGTGATCAAGAAAGTCCC 60 144747328 144747346 GAGCAGAAGACCTCACTGG 60 NA Rattus norvegicus 81 Syn1 ENSRNOG00000010365 ENSRNOT00000014250 2 1 1 80 X 1333189 1334441 TCAAAGTTGTGAGGTCTCTG 58 1334484 1334502 GGTAGTCTCCATTACGTGC 58 NA Rattus norvegicus 81 Nolc1 ENSRNOG00000018704 ENSRNOT00000025791 1 1 1 80 1 265832443 265832461 GAGCAGCAGTAGTGAAGAG 58 265832504 265833334 TTAACTGCTTTCTGCTGGAC 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 2 2 2 86 20 19352584 19357847 GACTATGTTAGAGATCACTATGGGA 59 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Faim3 ENSRNOG00000004441 ENSRNOT00000038822 3 1 1 80 13 47611285 47612099 TCATAGACAAAGTCACCACAC 58 47612141 47612159 GGCTTACTGAAGTGTTGGT 58 NA Rattus norvegicus 81 LOC688553 ENSRNOG00000037632 ENSRNOT00000035922 2 1 1 80 14 89257313 89258828 CAGACCTGATTTGTTGAAGC 57 89258871 89258889 ATATACCAGTCTGGCAGGG 58 NA Rattus norvegicus 81 Rn60_6_1120.1 ENSRNOG00000000345 ENSRNOT00000000387 2 1 1 60 6 103808616 103808634 GCTACTCCAGAGATGTCCT 58 103808574 103808592 ACCAAGTTGAGAACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560821 ENSRNOG00000023733 ENSRNOT00000034329 1 1 1 88 X 77885618 77885636 CAAGATCTACCCGGGACAC 60 77885796 77885814 ATGCGGACTCACATTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Irf7 ENSRNOG00000017414 ENSRNOT00000023504 2 1 1 90 1 214251153 214251510 GGATCTACAACTGGCCCAG 60 214251011 214251032 GGAATGATCCTAGGGACATACC 60 NA Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000007160 2 1 2 80 6 29192617 29192840 TACCTCTCAGGTGGTATGGA 59 29192556 29192576 CAGGTTCCAGTTATCCAACAG 59 NA Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000084903 1 1 2 74 6 29239011 29239029 TATGAGTTCACCGACCCAG 59 29236867 29236885 ATAACATCGTGTGGTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501,ENSRNOT00000068410 3 2 2 80 4 22871502 22871522 CAACGCATAAATATCACTGCC 58 22871563 22875806 AGGAAATCGAAGAAGCTGTC 58 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 3 2 2 82 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556154 22557559 ACGAAGTCTTCAATATCCTTGG 58 NA Rattus norvegicus 81 Inha ENSRNOG00000020097 ENSRNOT00000027227 3 1 1 122 9 82700773 82700791 GACCTCTGAACCAGAGGAG 59 82702379 82702398 GTGAAGAGACCTTCCTCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr1305 ENSRNOG00000039238 ENSRNOT00000060094 3 1 1 60 8 43249866 43249884 GCCGAAGGAAATTACTCCA 58 43249824 43249843 CTGGCTTCTCTGTTAATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 2 3 3 80 18 31077936 31077957 AGAGTTTCAATATCCCTCTCCT 58 31077780 31077895 TTTCATATGTCCAGCACCG 58 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 3 2 2 80 3 47475067 47475086 CATATGAAGCCTTCCGACAG 59 47475125 47488366 GTTCATAGTTCTCAGTCTTCTGC 59 NA Rattus norvegicus 81 Tmed3 ENSRNOG00000013889 ENSRNOT00000018603 1 1 1 80 8 97075963 97081093 CAGCTCTCACTCAGATGGA 59 97075901 97075920 GATAATGTGTCTGGGAGTCG 58 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254,ENSRNOT00000085125 2 2 2 80 1 214604686 214604813 GAAGCAGTTGAGCAATCCAC 60 214604853 214604874 GCTTTAGTGATTTCTGTGTCCA 59 NA Rattus norvegicus 81 Rn60_7_1409.3 ENSRNOG00000046625 ENSRNOT00000074411 2 1 1 60 7 143052102 143052125 GTTCCCAACTACAGCTTATTACTC 59 143052065 143052083 GAACCTTGAATCTCCCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt3 ENSRNOG00000018764 ENSRNOT00000025363 3 1 1 110 16 20125454 20125619 CTGACACTTAAGCAGGTCC 58 20125362 20125380 GACCATGTTGTCCGTATGG 58 NA Rattus norvegicus 81 Colec10 ENSRNOG00000008591 ENSRNOT00000011379 1 1 1 80 7 93975536 93975554 TGGGTCTGGATGTTGATGG 59 93975594 94005579 CATTATCTCCTTTAGGTCCTGGT 60 NA Rattus norvegicus 81 RGD1565682 ENSRNOG00000025444 ENSRNOT00000035013 2 1 1 80 1 252104214 252104232 AAGTGGTGAGTTTCAGGCT 59 252103531 252104171 TATAACGGAGGAGTGGTCTG 58 NA Rattus norvegicus 81 Gli4 ENSRNOG00000021765 ENSRNOT00000077773 2 1 1 137 7 116675160 116675815 TACCTGGCTTGACTCTGAG 58 116675915 116675934 CATTCCTGGTCAATGCTGTC 59 NA Rattus norvegicus 81 Slpil3 ENSRNOG00000049280 ENSRNOT00000076624 1 1 1 80 3 160776412 160776996 GGGAACAACAATGATGCTG 57 160776350 160776371 CTGTGATTTCTGAGGTTTAAGG 57 NA Rattus norvegicus 81 Olr1409 ENSRNOG00000047344 ENSRNOT00000046476 3 1 1 60 10 36530901 36530920 GTACTTCTTCCTTGCCAACC 59 36530943 36530961 GGGAATGAGATTGGTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol4l ENSRNOG00000010417 ENSRNOT00000013881 3 1 1 80 3 148914669 148914687 CTGCCTGTGAGAGTGAGAC 60 148914088 148914628 CTATGGGTTCTTCTTGTGAGGA 60 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 2 2 2 82 14 107792108 107794191 GGGATGATTCTTCTAGTTCTGC 59 107794234 107794252 TAGGTCAGGCTCTGAAAGC 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458,ENSRNOT00000080386 3 2 2 90 X 104430003 104430021 AGCCTGTACTGCGATACTG 59 104393044 104429949 CGTCATTCTGGTCATGGTC 58 NA Rattus norvegicus 81 Cfap126 ENSRNOG00000034221 ENSRNOT00000050804 3 1 1 94 13 89492034 89494141 GCCAACCAGTATGAAAGGG 59 89494363 89494381 TAACCTTCATGGGTAGCGA 58 NA Rattus norvegicus 81 Usp13 ENSRNOG00000030639 ENSRNOT00000048030 2 1 1 80 2 119197472 119224127 CCTACGACTCTCCGAACTC 59 119224171 119224189 TTTCAACGTGTTCCCTTCC 58 NA Rattus norvegicus 81 Krt83 ENSRNOG00000032859 ENSRNOT00000031257 3 1 1 80 7 143081280 143081299 TCAAGGCTCAGTACGATGAC 60 143081038 143081238 TCATCTCCTCACACTTGGTG 60 NA Rattus norvegicus 81 Rn60_5_1061.2 ENSRNOG00000025809 ENSRNOT00000035806 2 1 1 60 5 101998017 101998037 GCAAGGATGAAGAAGATGCAG 60 101998059 101998077 TTGAGGGAACTGCTGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl2l13 ENSRNOG00000012394 ENSRNOT00000016561 2 1 1 81 4 153409489 153411550 AGAAGTCTCTGAAGCCTTCAC 60 153411593 153411611 GGAGCTTTCAGGGTTAGCA 60 NA Rattus norvegicus 81 Glis3 ENSRNOG00000014768 ENSRNOT00000019816 1 1 1 80 1 246472273 246476295 GGACACATCTTGACACTAAACC 59 246472214 246472234 TTCTTAGGGAGCTTGGATCTG 59 NA Rattus norvegicus 81 Rabl6 ENSRNOG00000016795 ENSRNOT00000065410 3 1 1 80 3 2809657 2810502 GATAGTGACAGTGATGATGGAG 58 2809598 2809619 GTCTTCTATGTCCACATCATCC 59 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000015125 ENSRNOT00000020493 1 1 1 92 4 157327783 157328047 AAAGAAGAGCGGAGGAACC 60 157328103 157328121 TGGATATTTGACCCAGCCG 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 1 2 2 80 12 11723028 11723127 AAGACTCAAGGAGATGTTCCC 60 11722968 11722986 GGTTTGCCTTTCTCTTGCC 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 2 2 2 80 12 11722669 11722968 CTGTCCCTGTGAAAGAAGTG 59 11722608 11722627 GGGAATCAACATTCACTCCA 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 1 3 3 84 7 2907679 2907935 AAGAGCGATGAGATGAATGTG 59 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Olr384 ENSRNOG00000032117 ENSRNOT00000041509 1 1 1 60 1 230812034 230812052 CCTCAGATTCTTGCCACAC 59 230812076 230812094 CAGCACAGTGACCATAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fancf ENSRNOG00000023968 ENSRNOT00000032922 1 1 1 60 1 107231433 107231451 GGAAGAGCTGTGTCTAAGG 57 107231391 107231409 CTCTTCCTGCAGAAATGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502,ENSRNOT00000043433,ENSRNOT00000079044 2 3 3 80 1 197553101 197553119 GAAACTGTCTGGGACAAGC 59 197549851 197553061 CAGTAAATCACCACTTTCTCCTG 60 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 1 2 3 80 X 65279579 65279599 GAAGTTTGGTTCTTTGGTCTG 58 65279639 65280649 TGCAGTCACCTTCTTATTGAG 58 NA Rattus norvegicus 81 Fibp ENSRNOG00000020567 ENSRNOT00000027927 1 1 1 80 1 220843647 220843756 CTTGTGGAGAAGTTTGTGGA 58 220843797 220843817 TGAATACTGGTTGAGGAAGAG 57 NA Rattus norvegicus 81 Fam220a ENSRNOG00000024605 ENSRNOT00000029692 2 1 1 144 12 13044629 13066938 GCCTGCAGGTTCATATTGAG 59 13044504 13044523 CTTGTGACTGCTTCACACTG 60 NA InUTR Rattus norvegicus 81 Rogdi ENSRNOG00000003125 ENSRNOT00000004176 1 1 1 80 10 10764118 10764138 GCCAAGCTATTTATCTCCTGG 59 10764180 10764484 CATCCATGAGCTTGAGGAC 58 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 1 2 2 80 16 20403812 20403831 GAAGATGGTCACTTGCTTCC 59 20403874 20404072 AGGATGAGCTTGACGACAC 60 NA Rattus norvegicus 81 Mir181a2 ENSRNOG00000035630 ENSRNOT00000053753 3 1 1 60 3 23150363 23150381 CAAGGCAGCCTTAAGAGGA 59 23150405 23150423 TTGAATCCCAAACTCACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam26e ENSRNOG00000000825 ENSRNOT00000057313 3 1 1 87 20 27652853 27657256 AGTCTCAGATTCTAGGATGGTG 59 27652787 27652805 ACTTTAGATCTGCAGCGTG 58 NA Rattus norvegicus 81 Doxl2 ENSRNOG00000032432 ENSRNOT00000043790 3 1 1 91 4 78621965 78622234 GACGATCAGGATTTGGTAGC 59 78622288 78622306 AAGTTCCTAGATGAGGCCA 58 NA Rattus norvegicus 81 Pdia6 ENSRNOG00000050197 ENSRNOT00000074829 3 1 1 80 6 42581437 42581458 GAGATCTGACATAGTGTCAAGG 58 42581498 42582166 TCGTTGATTATCTCGAGCAG 58 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 3 1 1 66 9 65789158 65789176 GACCTCATCTCCGGAAGTC 59 65784832 65789131 TCATGTATAGTTCTCCTTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066,ENSRNOT00000013851 1 2 2 96 1 157654845 157654863 ACCTGTGAGGAATCCTTCC 59 157654923 157659069 TCTTGTTGCCCACTAACAC 58 NA Rattus norvegicus 81 Ccdc124 ENSRNOG00000018932 ENSRNOT00000025626 1 1 1 80 16 20321181 20321199 GAAGGAGCTGGAAGATGCT 60 20321243 20322136 TTCTCCTTCTCCTCCTTGC 59 NA Rattus norvegicus 81 Olr796 ENSRNOG00000049431 ENSRNOT00000043710 3 1 1 60 3 103249271 103249289 AATGAAGAGGGCAATGAGG 58 103249310 103249331 TCAAGAGATTTGTCTATAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360244 ENSRNOG00000029808 ENSRNOT00000045115 2 1 1 148 15 61873263 61873283 GAACGACAAATAGCAAAGGTG 58 61872670 61872688 TTCTCCACGGATAGTCGAG 58 NA DesignNoJunction Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 2 2 2 80 1 229049450 229050280 CAGATCCAAAGTTCACAATCCA 59 229050320 229050339 TGTTCTCTTGACCTTGACCT 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000005428 2 1 4 80 10 67536189 67539775 CTGCACATGGATTCTTCCTC 59 67539818 67539836 TTTCTTCTGAGACGCACTG 58 NA Rattus norvegicus 81 Rpl18 ENSRNOG00000021035 ENSRNOT00000028555 1 1 1 80 1 101702000 101702018 CACAACAAGGACCGAAAGG 59 101702061 101702275 CCTGTACAGCTTGACTAGCA 60 NA Rattus norvegicus 81 Lkaaear1 ENSRNOG00000024815 ENSRNOT00000034209 1 1 1 99 3 177205683 177205807 GATATACACAGGACTGGAGCA 59 177205604 177205622 TTACGCTTCTCACCAGCTC 60 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 3 2 2 80 5 19541775 19542047 CAGCCCATTCTTAAGATTCCT 58 19541715 19541734 TGCAAAGTGTTTATTGGCTC 57 NA Rattus norvegicus 81 Olr1132 ENSRNOG00000039919 ENSRNOT00000061323 3 1 1 60 8 19020329 19020347 AATTCCATCTGCTTGGGCT 60 19020287 19020305 AACATGGTGAGGACGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc4 ENSRNOG00000061040 ENSRNOT00000083017 1 1 1 80 20 26818608 26819729 AGATGCAGATGGCTATTGAC 58 26819769 26819790 AAGGATTCACAGACTCAATCAC 59 NA Rattus norvegicus 81 Ivl ENSRNOG00000009314 ENSRNOT00000012343 2 1 1 80 2 192762569 192762587 CAGCATCAAGAGACTCAGG 58 192762180 192762526 CGGATCCAGTACCATATCTG 57 NA Rattus norvegicus 81 Pkn1 ENSRNOG00000004131 ENSRNOT00000005770 3 1 1 80 19 24806715 24806822 GTCACTTTGGAAAGGTGCT 58 24806653 24806671 TGTCACCTTTCTTCAAGGC 58 NA Rattus norvegicus 81 Olr823 ENSRNOG00000013247 ENSRNOT00000017689 2 1 1 60 4 148477586 148477605 CGTATGGCTTCATCATCTCC 58 148477628 148477646 GCTTTCTGCTTCCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1055 ENSRNOG00000030191 ENSRNOT00000051359 2 1 1 60 7 16462745 16462766 CTAAACCCTTTCATTTACACCC 57 16462786 16462805 GCATATGTTTGAAGGCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189,ENSRNOT00000036205 2 2 2 81 10 11810929 11810947 CAGGCAGAGCTCTTTAGCA 60 11811171 11822706 GAGCCAAGACTGTACCTGG 60 NA Rattus norvegicus 81 Adgre1 ENSRNOG00000046254 ENSRNOT00000073926 1 1 1 80 9 9497851 9497871 TTTGTGAATGCCACCTTTACC 60 9494663 9497810 TGTAGCTGCACTCTGTAAGG 60 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 1 1 1 82 16 2004612 2036290 TTAAGGATTGCCCTCAGGC 60 2004548 2004566 CTTGTACTCGCCAAAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076962,ENSRNOT00000076675,ENSRNOT00000076539,ENSRNOT00000076320 2 4 5 60 13 77942281 77942299 CCTCTGTCATCGTCAGGTC 60 77942322 77942341 CATCACGCAACATTCTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051746.1 ENSRNOG00000047162 ENSRNOT00000072306 2 1 1 60 3 20695883 20695901 ATTGTCACCATCACATGCC 59 20695841 20695859 GCTGATACCATGCTAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066753.1 ENSRNOG00000032086 ENSRNOT00000040323 3 1 1 72 9 14779790 14779808 TACCTGCTCTCCTCAATGC 59 14780085 14780103 TTCGAAGTACCTCTGGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Fzd9 ENSRNOG00000001452 ENSRNOT00000001973 2 1 1 60 12 24475760 24475780 AATCTTCATGTCCTTGGTGGT 60 24475801 24475820 AGTCTTGGAACTCCATACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073,ENSRNOT00000018340 1 2 2 80 14 81380602 81380620 CTCTGCTGTCCCTAACCTG 60 81379956 81380559 TGCTCTCGAATCTTGTTCCT 59 NA Rattus norvegicus 81 AABR07066754.1 ENSRNOG00000042468 ENSRNOT00000066779 1 1 1 80 9 14864587 14864608 TGCACTTCTCATCAAGAATGTG 59 14864647 14864670 TGTAGCTTCAAGATCTGTCCA 59 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000016759,ENSRNOT00000089615 3 2 2 80 10 65488077 65488230 GTAGAAAGGATGTGGATGAGG 58 65488017 65488038 CGTCTCTTAGCTCTTTAACAGG 59 NA Rattus norvegicus 81 Fign ENSRNOG00000004679 ENSRNOT00000006175 3 1 1 110 3 49995424 50119288 TGTTTATGGCTTGAAGATGCAG 60 49995335 49995356 CTATAGGCTTCAACTTTGTGGG 59 NA Rattus norvegicus 81 Kank4 ENSRNOG00000007779 ENSRNOT00000066139 2 1 1 80 5 117397195 117399227 GTTAACGGTGGCTATGAGAC 59 117397134 117397152 CTCACTGTCAGACAAGTCC 58 NA Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000082415 1 1 2 88 1 4535426 4535492 GGGACATCATTGGAAGAGG 58 4529639 4529657 CTGTTCCTTCAGGTTCTGG 58 NA Rattus norvegicus 81 Olr1165 ENSRNOG00000047835 ENSRNOT00000044463 3 1 1 60 8 20230456 20230478 CATTTGTCATCCTCTACACTACC 59 20230495 20230516 GACCAAACATTTACACAGACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0967.1 ENSRNOG00000051064 ENSRNOT00000076252 2 1 1 60 14 96896018 96896042 CGCCTTTATATGTAGAGAAAGTCTG 60 96895982 96896003 TGTTGCAGGTAGATTAGATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019,ENSRNOT00000081124 3 2 2 60 X 63290360 63291042 GCCACATTGGATGTTACCA 58 63290318 63290337 TAGCTTGTCTGCTGATAACC 57 NA DesignRelaxed Rattus norvegicus 81 Ranbp10 ENSRNOG00000018000 ENSRNOT00000024891 2 1 1 80 19 37738887 37739360 ATGAGTCTAGCATGGACGA 58 37738825 37738844 ACAGGATGATCCTTTCTGTG 57 NA Rattus norvegicus 81 Csap1 ENSRNOG00000049151 ENSRNOT00000075648 1 1 1 60 10 13230191 13230211 CTTAAGTTTGGCAACAACTGG 58 13230233 13230251 CTTCAATCTCAGCCCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj14 ENSRNOG00000021056 ENSRNOT00000028591 1 1 1 156 1 101808393 101808411 CTTCAGTGAGAACGCAGTG 59 101806970 101806988 GTCCAGTGGGATGTACTCG 60 NA DesignNoJunction Rattus norvegicus 81 LOC306079 ENSRNOG00000031061 ENSRNOT00000040851 3 1 1 87 15 62521317 62521335 CTGTGAAGGCTCAATTCCC 59 62521386 62531562 TCAACCTCCATGAAACGCT 60 NA DesignNoJunction Rattus norvegicus 81 Tmem221 ENSRNOG00000018167 ENSRNOT00000024424 2 1 1 85 16 19985017 19985035 TCCTCTGAAGATGAGCCAG 59 19984341 19984968 GTCTCCGTTTCCTCATCCT 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424,ENSRNOT00000090009 3 2 2 81 15 84446917 84446938 CCAAATGTGACCTTAGATAGCG 59 84396792 84446877 ATGGATGGACCTCTTGTACTG 59 NA Rattus norvegicus 81 Rsb66 ENSRNOG00000012697 ENSRNOT00000017004 1 1 1 80 3 7270827 7271399 TCCTCAGAGCAAAGTACCC 59 7270765 7270783 TGACCACACCTCCATAGTG 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 1 3 3 80 4 125774156 125777392 CTACTATGTAGACCACATCAACAG 59 125774099 125774118 TGTTCAAGCTGTCTCTTCCT 59 NA Rattus norvegicus 81 Dkk2 ENSRNOG00000011360 ENSRNOT00000015116 1 1 1 80 2 237236430 237236450 GTCACTATTCCAACCATGACC 59 237236488 237239077 CTTCATGTCCCTTTATATGAGGC 59 NA Rattus norvegicus 81 Apip ENSRNOG00000007446 ENSRNOT00000009797 1 1 1 80 3 92992287 92994530 CTCTGGAGGGTATTACAGATACG 60 92994567 92994588 TCTTTGAGGTCCTTCTCTTCAG 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000086980 1 1 4 90 5 104652112 104656795 GGTCAGAGTGCTCTGTGAG 60 104656849 104656867 ACAACAGTGGAGACTCCAG 59 NA Rattus norvegicus 81 LOC100911909 ENSRNOG00000050809 ENSRNOT00000045673 3 1 1 60 10 62365518 62365537 GAGGATAACTTAATCCGCCA 57 62365477 62365495 AGCAGGCCAACTTAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt14 ENSRNOG00000046139 ENSRNOT00000073041 2 1 1 80 13 111640510 111667744 CAATCCTTCTGGTTGTGACTC 59 111640450 111640469 TCTAGAGACTGACAGGAGGA 59 NA Rattus norvegicus 81 LOC103690280 ENSRNOG00000058762 ENSRNOT00000083315 1 1 1 60 10 44458658 44458679 TGAAGACACATCCCAATATGAG 58 44458700 44458718 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr37 ENSRNOG00000016834 ENSRNOT00000022688 2 1 1 80 17 58013218 58017036 TTCTACCAGCAAGATTGTCTC 58 58017077 58017096 TGGCCAATATACTCCTTCAC 57 NA Rattus norvegicus 81 Rn60_X_0592.1 ENSRNOG00000051296 ENSRNOT00000076286 2 1 1 82 X 58335571 58335694 TCTTTCTGCATAGTGTCATTGG 59 58335734 58335755 GCATAAGATTTAGCACCAACAC 58 NA Rattus norvegicus 81 Gtpbp10 ENSRNOG00000007098 ENSRNOT00000009340 1 1 1 80 4 25639751 25644103 CTAGTAGGATTCCCAAATGCTG 59 25644142 25644162 TGCATAACTTGCAATCACAGG 60 NA Rattus norvegicus 81 Hipk2 ENSRNOG00000007034 ENSRNOT00000064891 3 1 1 80 4 66498565 66498584 CAGGGACAAAGACAACTAGG 58 66496757 66498523 GGTCATCTGGTGTCTTTAGC 58 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 1 2 2 80 7 23818969 23820423 TTTCACACGACAAGTGCTG 59 23818907 23818926 CGGAAGATGCGTAGTTTCAG 59 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 3 1 1 99 1 221538210 221540485 AGACCTCGAGGAGTCTCAG 60 221540548 221540566 TAGAGCATCCGCCTTACTG 59 NA DesignNoJunction Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079,ENSRNOT00000079698 1 2 2 80 10 17609907 17609931 GCATGGACATATTAACTCTTACCTG 60 17609968 17619533 TGATCTAAGCCTTGCTCTGG 60 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079,ENSRNOT00000079698 2 2 2 80 10 17632045 17632065 GCTGCTGTCAATGTAGTAGAC 59 17632104 17634621 CGTGCTCCACACTTTAATAGTC 60 NA Rattus norvegicus 81 Dao ENSRNOG00000054962 ENSRNOT00000077317 3 1 1 80 12 48357138 48357156 GCTAAACAGCGTCCATGAC 59 48355306 48357097 ATGATTCTTGCATTCTTCAGGG 59 NA Rattus norvegicus 81 Col18a1 ENSRNOG00000001229 ENSRNOT00000045315 3 1 1 81 20 12289500 12297309 AAGTTCCAGGGAATGATCTC 57 12297353 12297371 CATCTTCTTCATCCAGGCA 57 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 2 2 2 80 17 54021140 54021160 ACTAGACCTTTCTTCCAACCC 60 54021198 54021654 AGTAGGTGTTCTAATCTTGGGAG 59 NA Rattus norvegicus 81 Gimap8 ENSRNOG00000020169 ENSRNOT00000059173 1 1 1 92 4 78283445 78283564 TCTACCGATCCCTCTTTAGGA 59 78283618 78283636 CATCTGACTTCCTGCTGCT 60 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 3 3 3 80 20 27173891 27173910 TGCAGTTTGCTTCAAAGGAG 59 27173950 27174505 AGATCTCAATATACCTGTGCCC 60 NA Rattus norvegicus 81 Adss ENSRNOG00000004481 ENSRNOT00000005961 1 1 1 80 13 95919331 95919351 TTACGGAGATCAAAGTCGGAG 60 95917929 95919292 TTAAGACTTCTTGGTTTGCTGG 59 NA Rattus norvegicus 81 RGD1565131 ENSRNOG00000025212 ENSRNOT00000038919 3 1 1 83 12 12203939 12204072 AGTCTGTTGCTGAGGAGAG 59 12204118 12204137 ATGTGGAATCTTCACCAACC 58 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148,ENSRNOT00000083536 2 2 2 80 3 48508583 48508602 TGACACTATCTACCCACACC 59 48506648 48508543 GTGAAATAGTAGTCACTCGAGG 58 NA Rattus norvegicus 81 Bri3 ENSRNOG00000001009 ENSRNOT00000001336 3 1 1 93 12 12330356 12330374 ATAACATCCACAGTCGAGC 57 12322626 12330299 TATTCCAGGACACCAACCC 59 NA DesignNoJunction Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677,ENSRNOT00000067125 2 2 2 81 4 79035885 79035903 TCATGGACCATCCATTCCT 58 79035948 79037290 TGAGTGCTTGGACCTACTG 59 NA Rattus norvegicus 81 Fut1 ENSRNOG00000020995 ENSRNOT00000028494 2 1 1 105 1 101599489 101600208 AAGCTCAGCTATGTGGACTC 60 101600275 101600294 GTTTCCTCCATTCAGGTGGA 60 NA InUTR Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491,ENSRNOT00000081173 3 2 2 81 4 117862445 117864957 CACCTGCAAGATTCTGGTG 59 117864999 117865020 GAAGACCTTGTAGAAAGCTTCC 59 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 1 2 2 80 18 58415752 58418515 ATTCACTGCAGATCTTACTTGG 59 58415693 58415712 GAAGATGATGGTGAGGACGA 59 NA Rattus norvegicus 81 Emc1 ENSRNOG00000018097 ENSRNOT00000068168 3 1 1 80 5 157821014 157822326 GGCAAGTTTGACTGGAGAC 59 157822370 157822388 CAACTTCTTGGATCCAGGG 58 NA Rattus norvegicus 81 Crlf1 ENSRNOG00000020030 ENSRNOT00000060097 3 1 1 100 16 20680064 20680082 CATGAAGGACCTGACATGC 59 20679850 20680000 CCTGACCATACCACCTCAG 59 NA Rattus norvegicus 81 Gngt2 ENSRNOG00000006108 ENSRNOT00000008011 1 1 1 80 10 83657973 83658344 GTGATCCGATTTCCAAGACAG 59 83658386 83658404 TGCCTTTCAGAAGAGGGTC 59 NA Rattus norvegicus 81 Rbm48 ENSRNOG00000008980 ENSRNOT00000012086 1 1 1 80 4 27702574 27702593 CAGTAGATCTGCAGGATGAC 58 27702636 27707765 GCACAGATGAAGTCACCTC 58 NA Rattus norvegicus 81 Vom2r41 ENSRNOG00000028804 ENSRNOT00000041780 2 1 1 88 1 149440118 149441409 TTCAAATGCTTTACTTCGGGC 60 149440050 149440070 TGTGTCCTTAGGAGTCATCTG 59 NA Rattus norvegicus 81 Mrpl55 ENSRNOG00000002943 ENSRNOT00000003931 1 1 1 88 10 45552943 45554174 CATGATAAGGGCCTACATCAG 58 45554224 45554242 CAAGCAGACTACCCAAAGG 58 NA InUTR Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975,ENSRNOT00000036051 2 2 2 80 8 48429250 48429374 GATGAGAAACCAACATGCTG 58 48429417 48429435 GATCTTTGGGAACCTCTGG 58 NA Rattus norvegicus 81 Mir6326 ENSRNOG00000046282 ENSRNOT00000072421 2 1 1 60 10 62299379 62299397 TTGCCAAGAGTTGCTAGTG 58 62299420 62299439 TCCTAAATGCACTTGTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r109 ENSRNOG00000032724 ENSRNOT00000045376 3 1 1 60 4 166993821 166993839 TAACCAAATCCTCACCACC 57 166993861 166993881 TAATAGCATGAACCAGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549291 ENSRNOG00000046638 ENSRNOT00000073416 3 1 1 80 X 100632484 100632504 TGGATCCTTCTCAGAAGAGTC 59 100632224 100632443 CCCAAACGTAGCCTATAGCA 60 NA Rattus norvegicus 81 Mirlet7a1 ENSRNOG00000035632 ENSRNOT00000053755 1 1 1 60 17 16417857 16417876 CTGTGGGATGAGGTAGTAGG 59 16417899 16417917 AGTTATCTCCCAGTGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hacd3 ENSRNOG00000030232 ENSRNOT00000041915 3 1 1 81 8 70490022 70492654 GCTGCATTTCAAAGCTCAG 58 70489959 70489979 CTTCACGAGGTCTAAGAACTC 58 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845,ENSRNOT00000031328 1 2 2 80 3 177229382 177229483 AGTGGAAGATGAAGAGATCGA 58 177229525 177229543 ATGCAGATGGCGAATACAG 58 NA Rattus norvegicus 81 Olr807 ENSRNOG00000032535 ENSRNOT00000048423 3 1 1 60 4 72240565 72240589 ACCTTTCTTCCTAGTTCTCTTATCC 60 72240604 72240625 CTGTATCTTTAGGATGGTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r66 ENSRNOG00000047851 ENSRNOT00000058702 3 1 1 60 4 87608783 87608803 TAAATCCTGCTCACTCTTCCC 60 87608822 87608843 TGTCACTGTTACAATCATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcyox1 ENSRNOG00000016704 ENSRNOT00000022532 2 1 1 80 4 118191601 118191619 TGAGATGATCGCTCCTGTC 59 118191273 118191558 GTCATTGATACTGCACCCAC 59 NA Rattus norvegicus 81 Igf2bp1 ENSRNOG00000006122 ENSRNOT00000008139 3 1 1 86 10 83787926 83788630 GATCACCATCTCCTCGCTC 60 83787858 83787876 CTGCAGCAGTTCTCAATGG 59 NA Rattus norvegicus 81 Rn60_X_0594.1 ENSRNOG00000051096 ENSRNOT00000076001 1 1 1 60 X 58512807 58512825 CTTTGCCTTGACTGAGCAC 60 58512846 58512867 ATGTTTGTGGAAGGTATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911403 ENSRNOG00000045611 ENSRNOT00000074966 3 1 1 80 1 227225925 227227719 AAAGGTTTGGTTCGAAGCAG 59 227227758 227227780 CAGTGAGTTGATTATCATCCCTG 59 NA Rattus norvegicus 81 Rn60_X_0641.1 ENSRNOG00000022607 ENSRNOT00000039583 1 1 1 60 X 64096142 64096160 CATTACTGTGAGTGCCCTG 58 64096100 64096118 AAAGAGTTCCTGCTCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688739 ENSRNOG00000027656 ENSRNOT00000065766 1 1 1 81 11 65610769 65610788 GTGATGTAATGGCCATGGTG 59 65610831 65611101 GGAAATGAGCTTGGTGACAG 59 NA Rattus norvegicus 81 RGD1563483 ENSRNOG00000050184 ENSRNOT00000034101 3 1 1 80 15 52782985 52783004 GTGCATTGATGAAGACACCT 59 52783047 52783533 TGGTGAAACTTGTCAGTCG 58 NA Rattus norvegicus 81 Gsdmd ENSRNOG00000007728 ENSRNOT00000075917 2 1 1 80 7 116892850 116892868 GCGGCATGACTTTAGTCTG 59 116892910 116893056 TCCTCATTGGTTCCATCTGAC 60 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 1 2 2 80 1 48724193 48726150 GACTGCTACGTTAGGAGGA 58 48724131 48724149 GTAGAGCTTGTGTAGCCAG 58 NA Rattus norvegicus 81 Anapc2 ENSRNOG00000011295 ENSRNOT00000015099 1 1 1 80 3 2496517 2496536 TTATCAATGAGTACCGCTCC 57 2496578 2497342 CATTACGAATCTCCCTCTCC 57 NA Rattus norvegicus 81 Isoc1 ENSRNOG00000019711 ENSRNOT00000026706 3 1 1 82 18 53738089 53738107 TTGTGACATGCAGGAAAGG 58 53738153 53738291 CTCCTTGCAACAGTCTCTG 58 NA Rattus norvegicus 81 Slc27a4 ENSRNOG00000014369 ENSRNOT00000019500 3 1 1 80 3 8370398 8370419 TCTTCTATATCTACACGTCGGG 59 8370459 8370581 CAGCCATTCGGTAATACCTG 59 NA Rattus norvegicus 81 Gan ENSRNOG00000012671 ENSRNOT00000016963 3 1 1 80 19 49724010 49724029 TTGGCAACGAAAGATACGTG 59 49724071 49727013 CCTTCATGTGGACCTTTCTC 58 NA Rattus norvegicus 81 Ubap1l ENSRNOG00000050979 ENSRNOT00000072939 1 1 1 83 8 70887128 70889641 TACAGTAGCTTCCCTCAGC 59 70889688 70889706 GGATGCAGTCTACAGGAGG 59 NA Rattus norvegicus 81 Olr769 ENSRNOG00000050221 ENSRNOT00000073423 2 1 1 60 3 102826243 102826263 GTCTGGAAACATTGTCATCCT 58 102826203 102826222 CATGGGAGAATGAAGATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0690.1 ENSRNOG00000051240 ENSRNOT00000075845 2 1 1 60 X 68088907 68088925 ATGCTCATTGCCTTGATCC 58 68088865 68088889 GAATACCTTCCTGAATGATGAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galnt10 ENSRNOG00000002488 ENSRNOT00000003447 2 1 1 80 10 43067463 43142697 GAGGCGATACAGGAATTACAC 59 43142739 43142757 GTTATGCCAGTCCTTCAGC 59 NA Rattus norvegicus 81 Olr779 ENSRNOG00000050125 ENSRNOT00000046310 3 1 1 60 3 103128148 103128166 GCTCTTTGTGTTCTCCTCC 58 103128106 103128125 TACGATGAGTGAGTTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Terf2ip ENSRNOG00000010712 ENSRNOT00000014660 3 1 1 71 19 44232027 44234571 GAGCCACAGAACAAGAGGA 59 44234606 44234624 TCCATTCTCCTTGGTCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Klf5 ENSRNOG00000008785 ENSRNOT00000090637,ENSRNOT00000057843 1 2 2 95 15 83711211 83712317 TCTGTGATTATGATGGTTGCAC 59 83721151 83721169 TGCACTTGTAGGGCTTCTC 60 NA Rattus norvegicus 81 Sergef ENSRNOG00000011488 ENSRNOT00000015352 3 1 1 82 1 102660612 102660632 GAGTGACTTCTGTAAATCGGG 59 102659039 102660568 GACCTCCTCCATCTGTGAC 59 NA Rattus norvegicus 81 Ccdc25 ENSRNOG00000015939 ENSRNOT00000021621 1 1 1 80 15 42544547 42544566 TCTAACCTGAAGAAGACAGC 57 42544606 42544794 CACTGTCACAATCTTTACATCC 58 NA Rattus norvegicus 81 Treml4 ENSRNOG00000042360 ENSRNOT00000048975 3 1 1 80 9 14701283 14701302 CTTAGTTCTGACCACCTCTC 57 14700472 14701242 GAGGAAGAACTTTGGTTTCTG 57 NA Rattus norvegicus 81 LOC100909612 ENSRNOG00000046239 ENSRNOT00000072100 3 1 1 82 19 29400068 29400177 CAACACTGTGGAAAGGGAC 59 29400004 29400024 CATGAGGTCATATGTCACCAG 58 NA Rattus norvegicus 81 AABR07007928.2 ENSRNOG00000059867 ENSRNOT00000087827 2 1 1 60 2 35435570 35435588 CACGATCATCCTGATCCTG 58 35435528 35435547 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564804 ENSRNOG00000027455 ENSRNOT00000009044 3 1 1 88 5 138275728 138276051 CATTATTTCTCCACAGGAATGGG 60 138275662 138275680 ATGGAGTCCACGACATGTC 60 NA Rattus norvegicus 81 Six2 ENSRNOG00000058827 ENSRNOT00000079027 2 1 1 185 6 8955487 8955507 CTACTGCTTCAAGGAGAAGAG 58 8953330 8955340 CTGTTCTCCCTTTCCTTGG 58 NA Rattus norvegicus 81 Ostf1 ENSRNOG00000012156 ENSRNOT00000016871 1 1 1 80 1 234789415 234792166 TGAACCAGCAGAACAAGCT 60 234792208 234792228 GTAGCAACTGGACAATGTCTG 59 NA Rattus norvegicus 81 Flt1 ENSRNOG00000000940 ENSRNOT00000001248 2 1 1 80 12 9190060 9190079 GGATGAAGACTTCTGTAGCC 58 9190119 9196204 ATTTGGTAGATTTCAGGTGTGG 59 NA Rattus norvegicus 81 Als2cr12 ENSRNOG00000024917 ENSRNOT00000038431 3 1 1 80 9 65678766 65680471 ATGTACCAGGATAGCATTTACG 58 65678707 65678726 CATCTTCTCATCCTTCTCCC 57 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873,ENSRNOT00000019511 2 2 2 80 16 3020309 3020328 AAGATTCCCTGATTGACAGC 58 3020370 3023052 AAACATGGAGTTTCACACCC 59 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410,ENSRNOT00000021193 2 2 2 80 4 179305674 179305693 AGAATTAGAAGCTTCGACCG 58 179298018 179305631 AGATCTTTGGCCCTAAACG 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388,ENSRNOT00000090799 1 2 6 95 5 48007755 48007773 AAGTCCTCAGGAGTTGCTC 59 48007832 48008872 GTGAGGAGCCTAGAATCGG 59 NA Rattus norvegicus 81 Rn60_X_0651.3 ENSRNOG00000051090 ENSRNOT00000076515 3 1 1 60 X 64160604 64160622 ACATCTTGGAGCATTCGGT 59 64160645 64160664 GTGATACTGGGCAGAATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000087752 2 1 2 156 3 149235270 149235289 TCAAGAGGATGGGCTTGAC 59 149237187 149237205 TTCTTGACCTTGTCTGGCA 59 NA InUTR Rattus norvegicus 81 Fzd4 ENSRNOG00000016848 ENSRNOT00000023205 1 1 1 103 1 153589841 153589859 CAACTTAGTGGGACACGAG 58 153589926 153592001 AAAGGAAGAACTGCAGCTG 58 NA Rattus norvegicus 81 Dll4 ENSRNOG00000014011 ENSRNOT00000018970 1 1 1 80 3 111140088 111140280 CAGCTGTAAGGACCATGAG 58 111140323 111140342 AAGGTACTGTGTTCACAGTG 58 NA Rattus norvegicus 81 Zbtb39 ENSRNOG00000004306 ENSRNOT00000005685 1 1 1 64 7 71036613 71038300 GATTGACCTTGCTGATACTGAG 59 71038325 71038343 AGTTTGATCCTCATGCCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AC130866.1 ENSRNOG00000055188 ENSRNOT00000087788 3 1 1 177 4 113901181 113901199 AAGACCTGGTTCCAGAACC 59 113900943 113900961 CGAAGAGTGACGAGTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 1 2 2 80 7 143387077 143388134 CTGAAGAAGGATGTGGATGC 59 143387016 143387037 TTTGATGTCATCTGTCATGGAG 59 NA Rattus norvegicus 81 LOC689968 ENSRNOG00000042265 ENSRNOT00000066536 2 1 1 80 10 31651087 31651105 CCGAGTGGAAATGAAGGGA 59 31651149 31656932 CTGGTCGAATTGCTTCCTG 59 NA Rattus norvegicus 81 Gbx1 ENSRNOG00000013369 ENSRNOT00000017854 1 1 1 60 4 7175042 7175061 GCACTTCTCAGAGACTTTCC 58 7200045 7200063 CTCATCTGAGCTGTACACC 57 NA DesignNoJunction Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866,ENSRNOT00000080774 2 2 2 104 12 16098096 16098434 CTACGACTGGTACAGGTGG 59 16098501 16098520 AAGATACCCTTGGAGCTTCG 60 NA Rattus norvegicus 81 Pnpo ENSRNOG00000046493 ENSRNOT00000073746 1 1 1 93 10 84876842 84876860 AACTACTTCCATTCCCGGC 60 84876458 84876786 TCTTTCTCAGGTACTCCCGA 60 NA Rattus norvegicus 81 Psmd14 ENSRNOG00000061129 ENSRNOT00000082769 2 1 1 80 3 47651269 47651287 GGTCTTAGGACATGAACCG 58 47651331 47657333 CCGTGAATTAATGCCTGGA 58 NA Rattus norvegicus 81 Ago3 ENSRNOG00000034269 ENSRNOT00000042371 3 1 1 80 5 144424165 144424184 CCCAAAGATCGATGTCTACC 58 144415740 144424125 TCAACTACTTCTCTGTTCACTC 58 NA Rattus norvegicus 81 Hes1 ENSRNOG00000001720 ENSRNOT00000002346 1 1 1 115 11 74315030 74315049 TGCCAGCTGATATAATGGAG 57 74314790 74314954 CTTTGATGACTTTCTGTGCTC 58 NA Rattus norvegicus 81 Dppa1 ENSRNOG00000043293 ENSRNOT00000067312 3 1 1 80 10 31698141 31698162 GACCTCTATATTGGAACCTCTG 58 31695643 31698102 GTGTCTGTACTTTAGGACAGC 59 NA Rattus norvegicus 81 Atp5j2 ENSRNOG00000027049 ENSRNOT00000033537 3 1 1 80 12 11195245 11197493 TTTCGGAGAGGCTATGACC 59 11197536 11197555 CAGCACCATGTTAATCCCTG 59 NA Rattus norvegicus 81 Ccr9 ENSRNOG00000006311 ENSRNOT00000008269 1 1 1 80 8 132835317 132839698 CAGAATTCACAAGCCTTATTCC 58 132839737 132839757 AATTCATGTAGTCGTCTGTGG 58 NA Rattus norvegicus 81 Rars2 ENSRNOG00000008643 ENSRNOT00000011688 1 1 1 80 5 50114716 50115040 CTTCTCAGGTTCGATGAGGT 59 50115079 50115101 CAGGGTTAAGAGGTAACTAACGA 60 NA Rattus norvegicus 81 Mettl7a ENSRNOG00000001376 ENSRNOT00000052075 1 1 1 101 7 141974038 141974056 AGCCAAGAGAAGATCCTGC 60 141980224 141980242 GTAATTCCAGGTGGACCGT 59 NA DesignNoJunction Rattus norvegicus 81 Mettl7a ENSRNOG00000001376 ENSRNOT00000052075 3 1 1 103 7 141974036 141974055 AGAGCCAAGAGAAGATCCTG 59 141980224 141980242 GTAATTCCAGGTGGACCGT 59 NA DesignNoJunction Rattus norvegicus 81 Flg2 ENSRNOG00000050967 ENSRNOT00000074518 2 1 1 80 2 193483859 193483878 GAAGAATGTGGCACACTGAG 59 193483918 193484683 ATCTGGATTCTTCAGAATTGGC 59 NA Rattus norvegicus 81 Ppp1r9b ENSRNOG00000052113 ENSRNOT00000089497 2 1 1 80 10 82802536 82802554 GCTTTCAGAGGAAGAGGAC 58 82802596 82806195 GAGTAGGTGCTGAATACTTGG 58 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000077012 1 1 3 80 X 65068718 65068740 GACATCACTGTATTTGTACCAGC 60 65068779 65071792 CATCTGGTGGCATAAACCTG 59 NA Rattus norvegicus 81 LOC100362344 ENSRNOG00000036910 ENSRNOT00000055433 2 1 1 60 4 184096727 184096745 ACCCACAGAAAGAGATCCT 58 184096685 184096705 AAGTCCAATTCCTCTTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf2 ENSRNOG00000021261 ENSRNOT00000028883 3 1 1 82 3 124579463 124580025 AGGTCACCTATGATGTGGC 59 124579399 124579419 TTCTTCCTCCTGGAGTTTCTG 60 NA Rattus norvegicus 81 Vom1r83 ENSRNOG00000058204 ENSRNOT00000077129 2 1 1 60 4 88185623 88185643 ATAGCAGCAACAACATGAGAG 59 88185664 88185683 AGAATCAAGATGGTCTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr255 ENSRNOG00000051414 ENSRNOT00000083135 1 1 1 60 1 172485468 172485486 CTATGTGATGCCCAAGTCC 58 172485426 172485445 GTAGAACACAGAAACCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr776 ENSRNOG00000047253 ENSRNOT00000044181 1 1 1 60 3 103065996 103066014 TGTAAGCCTCTGCACTACC 59 103065954 103065973 CAGCCAGAAACAAAGTACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfkb1 ENSRNOG00000023258 ENSRNOT00000036838 2 1 1 80 2 240792101 240792120 GAGATGTGAAGATGCTGCTG 59 240789920 240792060 CTAAGTGTAGGACACTGTCCC 60 NA Rattus norvegicus 81 Olr533 ENSRNOG00000030825 ENSRNOT00000045231 2 1 1 60 3 74574415 74574435 GAATGAACTTCTGCTCTTCGT 59 74574375 74574396 GATGACCAAGATAGTGAGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kremen2 ENSRNOG00000004122 ENSRNOT00000005718 1 1 1 88 10 13079132 13079862 CTTCTGTAGGAACCCGGAC 60 13079062 13079080 GGATATCACAGTAGCGCCA 59 NA Rattus norvegicus 81 AABR07058199.1 ENSRNOG00000054576 ENSRNOT00000084764 2 1 1 80 7 104475934 104476428 CTGATAAACATGCTGGAGTTGG 60 104475875 104475897 GTTCTTTCTCAGCTCATCTAGGA 60 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 2 3 3 80 1 149150765 149151497 AATTTGACTCTTGGCAGATGG 59 149150705 149150726 GATTCAGGTTCACTTTGTCTCC 59 NA Rattus norvegicus 81 Cdx2 ENSRNOG00000032759 ENSRNOT00000048188 3 1 1 82 12 9469714 9469929 TCTGTTTGGAGCTGAGGAG 59 9469975 9469993 TCTTGGCTCAAGTGTTGCT 60 NA InUTR Rattus norvegicus 81 Fcho1 ENSRNOG00000033912 ENSRNOT00000040464 3 1 1 81 16 20141277 20141749 ATATCCTTTGACTCTGCCG 57 20141214 20141235 CATAGAACTTTCTAGGCTCCTC 58 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000067491 3 1 2 80 7 92241630 92241650 AAGCTACGACTGGTCTATGAC 59 92241688 92255750 CTTCTGTTTGAGTTTCTCCACAG 60 NA Rattus norvegicus 81 Tor1a ENSRNOG00000006894 ENSRNOT00000064660 2 1 1 80 3 9806533 9806553 AACAGTGACTATGTACACCTG 58 9803646 9806494 TAATTGGTCCTTATACAGGGTG 57 NA Rattus norvegicus 81 Uimc1 ENSRNOG00000016891 ENSRNOT00000022703,ENSRNOT00000091200 1 2 2 80 17 10107678 10107700 AATGGAGAAGACTCTGTAGATGG 60 10107734 10112284 CCTATTATCAACCTGCCTATTACTC 59 NA Rattus norvegicus 81 AABR07061362.1 ENSRNOG00000051562 ENSRNOT00000080213 2 1 1 80 4 119466007 119466025 ATCTTCAGGATACCAGCCT 57 119466071 119466097 GAACAAATAACCTGAGCATCAG 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000076811,ENSRNOT00000016468 2 3 3 80 14 85965015 85965374 CATTATGGAGATGGTACAAATGAGG 60 85960944 85960962 GGACAGCATTTCCTGAAGC 59 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000076811,ENSRNOT00000016468 3 3 3 80 14 85960972 85965005 ATGACTTCCCAACAGTGGA 59 85960910 85960931 GCTTCTGTACTTGGTATGTCTC 59 NA Rattus norvegicus 81 Olr587 ENSRNOG00000050681 ENSRNOT00000073336 3 1 1 60 3 75923546 75923565 GGCCCAAGATGTTGATAGAC 59 75923505 75923523 GCACAACCAACAAATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp260 ENSRNOG00000046867 ENSRNOT00000074301 1 1 1 60 1 88452338 88452358 CGAAAGCCTCTTCACTTACTC 59 88452378 88452398 CACTTATATGATTCCCTCCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcc1 ENSRNOG00000009787 ENSRNOT00000013274 2 1 1 80 4 119652611 119652629 GTGAACCTACGGCTAGAGG 59 119652673 119653993 GCTGTTCTTCCTTGGTGTC 59 NA Rattus norvegicus 81 Ror2 ENSRNOG00000053232 ENSRNOT00000090782 1 1 1 84 17 11987374 11987392 GAAGTGGAGGACTCAGAGG 59 11987438 12113452 GAAAGTAGCCTTTCAGAGTGG 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 1 3 3 80 X 104883834 104883854 GAAGCTACTGAAGAACAACTG 57 104883893 104884169 CTCCCTATCGTATACCAATCTG 58 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 1 2 3 80 7 143493426 143493810 CTGAAGAAGGATGTGGATGG 58 143493365 143493384 GTTGATTTCATCAGTCAGGC 57 NA Rattus norvegicus 81 Npc1l1 ENSRNOG00000049955 ENSRNOT00000075827 2 1 1 80 14 86349578 86349597 CAACCTTCTGATCACCTTGC 59 86346606 86349535 ACATCTGGTCCCAGATAGC 59 NA Rattus norvegicus 81 Atp5b ENSRNOG00000002840 ENSRNOT00000003965 1 1 1 80 7 2505867 2506152 AACCAAACAATTCGCTCCT 58 2506196 2506214 CCAGTCACCAGAATTTCCT 57 NA Rattus norvegicus 81 Nup188 ENSRNOG00000025185 ENSRNOT00000030996 1 1 1 80 3 8898029 8898498 CTATGTAGTTAAGGGTTCATTGGAC 59 8898535 8898554 CAGTAGGCAAAGCGTTTCTC 60 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 2 2 2 109 17 31494558 31494576 GATAAGCGATGAGCATGGC 59 31494648 31494917 CATATTTGTTGCCAGCAGCT 60 NA Rattus norvegicus 81 Prune ENSRNOG00000021120 ENSRNOT00000028677 3 1 1 80 2 196438216 196439892 ATATGTTACCCAAGAGCGAC 58 196438155 196438175 AGTATTTCTGCTCGATTGGTC 58 NA Rattus norvegicus 81 Pcnxl3 ENSRNOG00000020742 ENSRNOT00000064136 3 1 1 80 1 221040473 221040491 GGAAAGTGAGTTCCACACC 58 221040289 221040429 GCAGCAATTCTGAAACCTG 58 NA Rattus norvegicus 81 Asmt ENSRNOG00000001324 ENSRNOT00000001791 1 1 1 94 12 18524115 18524133 GATCTCCCTGATGTCATCG 57 18522681 18524057 GAACGGAAGAAGTCACCAG 58 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 2 1 1 78 20 2485182 2485200 GACTTACCTGCTACGGGAG 59 2485242 2485782 ATAAGAGCGCAGCAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236,ENSRNOT00000068174 2 2 2 80 17 68506520 68507489 CTCTACTCTTACAGGGATCCA 58 68507529 68507549 CTTTCCAGATTTAGCCCAGTC 59 NA Rattus norvegicus 81 Btnl8 ENSRNOG00000029340 ENSRNOT00000041348 2 1 1 80 20 2851385 2851404 TTCATTTACAGCCTGGAGGA 59 2847806 2848167 TCCAGAGTGAAAGTCCAGG 59 NA Rattus norvegicus 81 Krt82 ENSRNOG00000033403 ENSRNOT00000029461 2 1 1 80 7 143200538 143201070 CCTTGAAGAAGGATGTGGAC 58 143200477 143200498 CAATCTCATGTTCTAGAGCCTC 59 NA Rattus norvegicus 81 AABR07058124.1 ENSRNOG00000037549 ENSRNOT00000056894 1 1 1 80 7 101069768 101069974 AAGGAGTATGTCATACCTCCAC 59 101070015 101070033 CATTTGGGTCATCTCGGGT 60 NA Rattus norvegicus 81 Tspan4 ENSRNOG00000029810 ENSRNOT00000049448 1 1 1 80 1 214470362 214471392 CTGCTCACTTTCTTTGTGCT 59 214471433 214471453 GTCACTGTAGGCAAAGAAGAG 59 NA Rattus norvegicus 81 Olr194 ENSRNOG00000046579 ENSRNOT00000042936 3 1 1 60 1 170034218 170034237 TTTCCTATGCCCTCATCCTC 59 170034177 170034196 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc3a ENSRNOG00000014478 ENSRNOT00000066888 2 1 1 80 15 54398810 54399453 CAAGTGAATTGGGAGATTCCT 58 54398750 54398768 ACTTCCTTCAACTCCTCCC 59 NA Rattus norvegicus 81 Ap2s1 ENSRNOG00000015865 ENSRNOT00000021310 3 1 1 80 1 78676247 78676266 GAAGTTGATCGAGGAAGTGC 59 78676309 78681275 TTGAAGTTCCGGAACTCCA 59 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973,ENSRNOT00000081825 2 2 2 80 5 48330508 48341077 TCGGGACAAATTTCCATGC 59 48341121 48341139 GCCTCAGATTCACTGTAGC 58 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 2 1 1 97 10 13537936 13537954 ATCCCAGTGGTTATGGCTG 60 13537764 13537875 CTCCTGTAGAGGGTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Otoa ENSRNOG00000017487 ENSRNOT00000023591 3 1 1 80 1 191029889 191029907 TTCTCCTGGTCCTCTTCCT 59 191029948 191030840 GCAACAATGGATGTAAATCCTG 58 NA Rattus norvegicus 81 LOC100911558 ENSRNOG00000045991 ENSRNOT00000075695 2 1 1 89 18 35069405 35071501 TTTAGCAGGTAACACTACAGCT 60 35067870 35067889 ACAGGATCATAATCCCTGGG 59 NA Rattus norvegicus 81 Necap2 ENSRNOG00000008427 ENSRNOT00000011394 2 1 1 80 5 159597316 159597336 TTTATTGGGATTGGCTTTGGG 59 159596106 159597276 CTTCACCCACTTGAAATGGTC 60 NA Rattus norvegicus 81 Rn60_X_0660.5 ENSRNOG00000051113 ENSRNOT00000076162 2 1 1 60 X 65149482 65149500 GCCAGAGACAAAGCAAGAG 59 65149524 65149542 AGCAGCTTTCTTCTCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bex2 ENSRNOG00000032729 ENSRNOT00000042126 3 1 1 164 X 106557464 106557881 ATAGGCCCAGGAGAAATGG 59 106557318 106557337 AGGCACGTAGTATTCTCCAG 59 NA InUTR Rattus norvegicus 81 LOC102551702 ENSRNOG00000032548 ENSRNOT00000042191 3 1 1 84 20 43584141 43584161 GAGAAAGAGGAGAGGGAGAG 58 43584714 43584732 TGTTGAAGGTCATCTGGGT 59 NA Rattus norvegicus 81 Rn60_12_0305.1 ENSRNOG00000051210 ENSRNOT00000076527 2 1 1 60 12 28476999 28477019 TCATCAAACAGTCAGAGTTGG 58 28477039 28477059 AAGATTTGTCTCTACTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr33 ENSRNOG00000038990 ENSRNOT00000009040 1 1 1 80 6 72805602 72805620 TCCACATTGATTCTGCCCT 59 72805464 72805560 GGTGATAACGGTCAACATTCC 59 NA Rattus norvegicus 81 Lurap1l ENSRNOG00000033740 ENSRNOT00000041374 1 1 1 80 5 98469442 98514393 AGGAGATGGTGAACCTCAG 58 98514437 98514455 TGATGGACTCGATGCTCTC 59 NA Rattus norvegicus 81 Slc39a10 ENSRNOG00000011677 ENSRNOT00000016262 1 1 1 80 9 60040310 60042383 CCAACATGAATGTTTGAACGTC 59 60042423 60042442 AATAGATCAGGCGAGATGGG 59 NA Rattus norvegicus 81 Rn60_13_0841.2 ENSRNOG00000051185 ENSRNOT00000076486 1 1 1 82 13 79148137 79148155 ATGTGCAGAAGGCTAAGCA 60 79147842 79148091 AACATGGGCTTGATCACCT 59 NA Rattus norvegicus 81 Ganab ENSRNOG00000019724 ENSRNOT00000035650 3 1 1 80 1 225114250 225114270 ACTCCTTATTCACCCTGTGTC 60 225114310 225114417 TCATACCACACCTCTTCTTCG 60 NA Rattus norvegicus 81 Tmem86a ENSRNOG00000013663 ENSRNOT00000018688 1 1 1 136 1 103175368 103176036 GATACTTTGAACATGGTCTCCTG 59 103176132 103176150 GTAGAGGAGGGCATAGCAC 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000085067,ENSRNOT00000083682 3 2 3 86 2 243553526 243554696 GAAACCAGGTGATAAAGTCATCC 60 243554742 243554760 CAACAGAGGTTGCTTTCCG 60 NA Rattus norvegicus 81 Mpp7 ENSRNOG00000018760 ENSRNOT00000025458 2 1 1 80 17 60180821 60180841 CCTGACGATATTGATGACGAG 59 60180883 60181982 AATAGTAGCACCCAGAGGC 59 NA Rattus norvegicus 81 Pla2g2e ENSRNOG00000017024 ENSRNOT00000022847 2 1 1 92 5 157330955 157332456 CTTCTGTGCTGGTAGAACG 58 157332511 157332530 TTATAAGTGCCCAGGTTGTG 58 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191,ENSRNOT00000011073,ENSRNOT00000084004 3 3 3 82 10 12052238 12052257 GGTTTCCCTACTGGATAAGC 58 12052302 12052718 CTCCAATGTCCTGCATGAG 58 NA Rattus norvegicus 81 Txndc16 ENSRNOG00000006334 ENSRNOT00000008372 2 1 1 80 15 19486553 19486573 TAAAGACCTGTTCAGCTTCTC 58 19483483 19486511 TGGAAACACTCTTTCGCTG 58 NA Rattus norvegicus 81 Bpifa6 ENSRNOG00000043258 ENSRNOT00000065104 3 1 1 80 3 149469365 149469384 GCCAACTTGATCAACCTGAG 59 149469426 149470676 GGACAGGTGTTGACAATTGG 60 NA Rattus norvegicus 81 Vom2r30 ENSRNOG00000038479 ENSRNOT00000046047 3 1 1 80 1 74582069 74593981 TCATTGCTTGAAGCTAAACTCC 59 74582010 74582033 CTGTGTTTCATAATCACTCTGTCC 60 NA Rattus norvegicus 81 Selk ENSRNOG00000014624 ENSRNOT00000020284 2 1 1 96 16 6036021 6038717 ACATCTCGAATGGTCAGGT 58 6038775 6038795 ACCACAAATTCTGCTATTCCC 59 NA Rattus norvegicus 81 Ier3ip1 ENSRNOG00000030004 ENSRNOT00000050772 2 1 1 146 4 132141670 132142355 ATTGTAGCAGAGCAGGGAC 60 132151584 132151602 GATACCGACCAGGATGTGG 60 NA Rattus norvegicus 81 Emx1 ENSRNOG00000015493 ENSRNOT00000020786 3 1 1 86 4 116973986 116974004 AGAATCACTACGTGGTGGG 59 116983574 116983592 TCTGGAACCACACCTTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Fam96a ENSRNOG00000017119 ENSRNOT00000022999 1 1 1 88 8 71795035 71797645 GAAGAAGACATCAACAAGCAG 58 71797695 71797713 CACTGTTCCACAATCTCCC 58 NA Rattus norvegicus 81 Ube2n ENSRNOG00000058053 ENSRNOT00000089874 3 1 1 88 7 36638810 36638830 TGCTCCTAATCCAGATGATCC 59 36638878 36639468 ATGCTCTTGCTGTTTCTATGG 59 NA Rattus norvegicus 81 Rpl36 ENSRNOG00000033473 ENSRNOT00000043704 2 1 1 60 9 10441345 10441447 CAAGTTTATCAAGAAGAGGGTGG 60 10441307 10441325 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Slc25a5 ENSRNOG00000039980 ENSRNOT00000015085 1 1 1 80 X 123406817 123406837 GCTGGCCTAACTTCTTATCCT 60 123406876 123407233 CATGATATCAGTTCCTTTGCGT 59 NA Rattus norvegicus 81 Kb15 ENSRNOG00000009105 ENSRNOT00000038242 3 1 1 80 7 143211747 143211765 AGATCTCTGAGCTGAACCG 59 143210915 143211703 CATCAGCAATGGAAGCCTG 59 NA Rattus norvegicus 81 Fam179a ENSRNOG00000026344 ENSRNOT00000036374 3 1 1 80 6 23385141 23388604 ATGCATCAGCTAACTCATTACC 59 23385082 23385101 GATCCATCTCCTCTTCCTCC 59 NA Rattus norvegicus 81 RGD1561870 ENSRNOG00000042782 ENSRNOT00000067026 3 1 1 60 1 163814053 163814074 TATCTTTAGAGACCCAGCTCTG 59 163814014 163814033 TTCAAACTTAACCTTGGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp609 ENSRNOG00000015977 ENSRNOT00000021554 2 1 1 80 8 71245288 71266640 GAAACAGAAGATGGGATGCT 58 71245227 71245246 TCTTGTGCAGTCAAGAAGTG 59 NA Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000076989 2 1 2 60 13 79079819 79079838 CTGTGTTAGAGGAGGGATGG 59 79079778 79079797 CAAGGTAGCCAAACTAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000076989 3 1 2 60 13 79079858 79079879 CTGTATTAAAGGGTCACAGCAC 59 79079819 79079838 CCATCCCTCCTCTAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctcf ENSRNOG00000017674 ENSRNOT00000023853 3 1 1 81 19 37638492 37641888 AAAGTGATTTGGGTGTCCAC 59 37641932 37641950 AACACAGCATCACAGTAGC 58 NA Rattus norvegicus 81 Rn60_20_0031.1 ENSRNOG00000039966 ENSRNOT00000061411 2 1 1 75 20 3076642 3076661 CTTCTGCTGCCTTCTTTGTC 60 3079184 3079202 AACTGTGTAGGTGGGTTCG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07015066.1 ENSRNOG00000046600 ENSRNOT00000072398 1 1 1 60 14 46588730 46588748 AGAGGGTGTAAATCTCGCG 60 46588772 46588790 TGTTCACCTTGGAGACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc27 ENSRNOG00000042932 ENSRNOT00000006505 2 1 1 80 6 21815429 21815447 GAGAAGCTGGAGATGTGGG 60 21797123 21815389 CCTAAGAATTTCTTCTGCCTTCC 60 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000023407 ENSRNOT00000029531 3 1 1 144 1 31262393 31262411 GGTCGATTGCCGATTTCTC 59 31262026 31262044 CTAGCAGGATCGAGAAGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fos ENSRNOG00000008015 ENSRNOT00000010712 1 1 1 80 6 109301675 109301693 GTGGTGAAGACCATGTCAG 58 109301735 109302160 TTCCTCTTCAGGAGATAGCTG 59 NA Rattus norvegicus 81 RGD1310769 ENSRNOG00000008781 ENSRNOT00000012327 1 1 1 80 6 109684001 109684128 CCTTGATGGTAGCAAGTTTCTC 59 109683942 109683962 TCTGTCTGGATACTGGTTCTG 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982,ENSRNOT00000021008,ENSRNOT00000089433 1 3 3 80 3 113418582 113418782 CAACTGGTTCAGCTATGAGG 58 113418521 113418539 GCAACTTTGACCCAGAAGG 59 NA Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000035910 1 1 2 80 1 227455867 227455885 GGTAAACCCATACCCAAGG 58 227454476 227455826 CCAGAGTTAATGAACAAAGCAG 58 NA Rattus norvegicus 81 LOC100909648 ENSRNOG00000048522 ENSRNOT00000074512 2 1 1 111 13 48368947 48368966 AAGATGACCTTTGTCATCGT 57 48369037 48377758 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627,ENSRNOT00000065931 3 2 2 80 19 26194564 26194693 ACAAAGTGCTGAGGTATAAGC 59 26194733 26194753 GAAGATTCATGTAGTCCGGAG 58 NA Rattus norvegicus 81 Rab5b ENSRNOG00000006130 ENSRNOT00000061878 2 1 1 80 7 3108402 3109801 ATGGTGGAGTATGAAGAGGC 59 3108341 3108362 CATAGCAGTCTTAGCTGAAGTC 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076212,ENSRNOT00000057718 3 2 4 60 X 71968135 71968153 CACCTACCAATCCTTGTCC 58 71968176 71968195 AGTACACTCAATGACTGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909722 ENSRNOG00000050844 ENSRNOT00000073999 2 1 1 130 3 9373345 9377046 TCGCCTCATTCAGCTTCTC 60 9377140 9377158 TCTGAAGGTCAGCCTTGAC 59 NA Rattus norvegicus 81 LOC100910990 ENSRNOG00000046990 ENSRNOT00000067490 2 1 1 80 3 152151973 152152144 ACGATTTCAGAATGCTCCA 57 152151911 152151932 TTGAAGTAGGAAACCATCTGAG 58 NA Rattus norvegicus 81 Tbx21 ENSRNOG00000009427 ENSRNOT00000012538 3 1 1 80 10 85034498 85034521 CTAACACTCACATCTTTACCTTCC 59 85034343 85034459 TCAGCTGAGTGATCTCTGC 59 NA Rattus norvegicus 81 Rn60_12_0468.1 ENSRNOG00000030813 ENSRNOT00000043984 3 1 1 60 12 44890771 44890789 GAAGTGCCTCAAGTCTCAG 58 44890813 44890831 TTTGAAGTGGCTGTAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562229 ENSRNOG00000006356 ENSRNOT00000034584 1 1 1 87 14 114850328 114850346 AGTGACTTCCAGAAGCCAG 59 114835944 114850283 TAAGTGGAACTATCCCATAAGAAGG 60 NA Rattus norvegicus 81 Olr374 ENSRNOG00000030032 ENSRNOT00000049799 3 1 1 60 1 230577030 230577048 GCTTTCTCTACCTGCTCCT 59 230577072 230577090 GGCTACAGCATCCATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0735.2 ENSRNOG00000051269 ENSRNOT00000076628 3 1 1 60 X 72611814 72611833 TATGAAAGGCCCATTAGGCT 59 72611855 72611874 CAGGGTGTATGACATAGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 1 4 4 80 7 122238165 122238964 TGACATGAAGGTGGCAGAG 60 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 2 2 2 80 5 173349616 173349634 CCTATGCTCTGTGAAGCCA 60 173349677 173349768 AGCATACAGCTCTTGGTAGG 59 NA Rattus norvegicus 81 LOC683674 ENSRNOG00000024567 ENSRNOT00000039191 3 1 1 82 12 13302906 13302924 GATCTTTAGTGCCAGCCCT 60 13302969 13306890 TGAGGTCATCTGATGACAGG 59 NA Rattus norvegicus 81 Socs4 ENSRNOG00000011377 ENSRNOT00000015120 1 1 1 158 15 24056460 24068949 GATCCGTCAAGAAAGTGCC 59 24069071 24069089 TCAGCACTTCTACTCCGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Socs4 ENSRNOG00000011377 ENSRNOT00000015120 3 1 1 159 15 24056459 24068948 AGATCCGTCAAGAAAGTGC 58 24069071 24069089 TCAGCACTTCTACTCCGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ttll6 ENSRNOG00000004939 ENSRNOT00000006594 3 1 1 80 10 83991709 83993423 TTCCCAAGACACAATACCCA 59 83993465 83993484 CCTCCATTCCTTTCTTCCTG 58 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000047971 ENSRNOT00000072992 1 1 1 60 1 32570372 32570391 AAGAAGCGCTGTAGAGACTG 60 32570331 32570349 TACAGAGGACAAACCAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftsj2 ENSRNOG00000043267 ENSRNOT00000042366 3 1 1 121 12 16399438 16399457 GAGAAGCATCACATCCTGAG 58 16399541 16402477 ATGGGAGAGCTGGAATCTG 59 NA Rattus norvegicus 81 Stbd1 ENSRNOG00000002218 ENSRNOT00000003020 2 1 1 90 14 16977996 16979486 CAAAGCAGAGCATCTTCGA 58 16977924 16977942 ATTCTGCAGTCTCTGTGCT 59 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 2 2 2 92 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952980 47958504 CTGGATTTGAGTGGTGCAC 59 NA Rattus norvegicus 81 Lyrm5 ENSRNOG00000015848 ENSRNOT00000021284 2 1 1 100 4 179481306 179481405 ATCTGCTGTATCTTGGACGG 60 179481468 179481486 CTCTGGGTCCTTCACATCC 60 NA DesignNoJunction Rattus norvegicus 81 Plet1 ENSRNOG00000024346 ENSRNOT00000059210 1 1 1 80 8 54930362 54930380 ACAACTCAGCCTTCCAGAC 60 54930422 54932618 TGACAATGAAGATCGTCAGGT 60 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 1 1 1 174 X 106791473 106791965 TTGCTTGAATTCAGCAGGT 58 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc68 ENSRNOG00000021381 ENSRNOT00000039702 2 1 1 80 18 68423748 68423768 GGAATCGCATGTTTAAGGAGG 60 68423807 68427363 TCTGAACATTTCCAGATTGCTC 59 NA Rattus norvegicus 81 Rps27l3 ENSRNOG00000020492 ENSRNOT00000027780 1 1 1 60 1 255573047 255573145 AGAAGAAGTCTTACACCACCC 60 255573007 255573027 GCCAACTTGACCTTCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Pdia3 ENSRNOG00000015018 ENSRNOT00000020478 1 1 1 80 3 113399531 113400318 AGAAGTATGAAGGTGGCCG 60 113400356 113400380 CTTGAATTATAGGAGGGTTTGTAGC 60 NA Rattus norvegicus 81 Ccdc91 ENSRNOG00000001847 ENSRNOT00000002527 1 1 1 80 4 181942686 181942705 GGAGAAAGACTTCCTGAAGG 58 181942747 181971836 TTATGCTTCTCCTGAAGCTC 57 NA Rattus norvegicus 81 Cmc2 ENSRNOG00000011279 ENSRNOT00000014997 2 1 1 80 19 49433669 49438103 GCTTGAAGAATGAGTACATGGA 59 49433610 49433628 GAGGATCAGAAAGCCTGCT 60 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 1 2 2 80 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615633 141641691 GGATGTAGTGCACCTTATCCA 60 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 1 2 2 80 3 3541057 3541076 TACGATACCATGGTGGAGGA 60 3517147 3541015 CTCTGGTTTCTCTTGCACTG 59 NA Rattus norvegicus 81 Nomo1 ENSRNOG00000021118 ENSRNOT00000028680 3 1 1 80 1 102062833 102062853 GATCAACCAGTTTGACCTGAG 59 102062894 102064334 CTCTTGTACAGCTTCACCCA 60 NA Rattus norvegicus 81 Olr775 ENSRNOG00000045988 ENSRNOT00000052294 1 1 1 60 3 103043340 103043359 AACCACTCCACTATTTCACC 58 103043299 103043317 GAAACCAACACCAACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561195 ENSRNOG00000030383 ENSRNOT00000046725 2 1 1 60 5 83647753 83647774 CGTAATGAGGATGAGGATTCAC 59 83647714 83647733 TAACAGGCCCGTAAGTTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 1 2 2 80 13 95128709 95128730 TCTATGGTGCAGAAATTGTCTC 59 95120871 95128671 AATTCTCCAACTTGAGATCTCG 58 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471,ENSRNOT00000058548 3 2 2 80 17 63265463 63265482 CTAAAGTTGTGGCTGAACCG 60 63265522 63267301 GCGATATAGGACCATTCATCAG 59 NA Rattus norvegicus 81 Flii ENSRNOG00000004159 ENSRNOT00000006753 3 1 1 80 10 46956541 46956629 GCAAACAGGTCATCAACGA 59 46956479 46956499 CATCGTCATAGGGTTTCTGTG 59 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000087057 1 1 4 60 5 50232937 50232955 AACCTTGTTTCGAGCTGTG 59 50232244 50232915 TCATGGTTGATACAGAACAGG 58 NA DesignRelaxed Rattus norvegicus 81 LOC100912429 ENSRNOG00000046920 ENSRNOT00000075184 3 1 1 81 15 19278211 19281263 CAAAGTGAAGCAGGAACGG 60 19278148 19278168 GTGCTCCTGTTCTGATAACTC 59 NA Rattus norvegicus 81 Myrf ENSRNOG00000028274 ENSRNOT00000039133 2 1 1 80 1 226268558 226269211 GTAGTGAACAAGGAGCGGA 59 226268496 226268514 AGTCTCCAGGTTGTCTGTC 59 NA Rattus norvegicus 81 LOC100911994 ENSRNOG00000050855 ENSRNOT00000064866 1 1 1 80 4 31343271 31343291 TTCAACCACATTTGGATGCTG 60 31343332 31343977 CAGTTGAGACTGTCTGGGAG 60 NA Rattus norvegicus 81 Marc1 ENSRNOG00000004101 ENSRNOT00000005459 2 1 1 80 13 102699587 102706785 CTGGAAACACTGAAGAGTTACC 59 102699528 102699546 ATATTGTCCGAAGGTGGGT 58 NA Rattus norvegicus 81 Marc1 ENSRNOG00000004101 ENSRNOT00000005459 3 1 1 80 13 102699587 102706784 TGGAAACACTGAAGAGTTACC 58 102699527 102699545 AATATTGTCCGAAGGTGGG 57 NA Rattus norvegicus 81 Fbxo18 ENSRNOG00000018549 ENSRNOT00000025228 3 1 1 80 17 70423125 70423824 AGTGAGAAGCTGAATGGTG 58 70423868 70423886 TGCCTCTTCTTTGCATTCC 59 NA Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000015511 2 1 2 81 15 24090882 24090903 GAATAATCCTTACCAAGTGCCT 58 24090942 24100141 GTCACCTTAATGGTAAGAGTGG 59 NA InUTR Rattus norvegicus 81 Lrrc25 ENSRNOG00000022565 ENSRNOT00000031692 2 1 1 60 16 20561616 20561634 CCGAGGATTGTTCATGGTC 58 20559742 20559761 ATGTAGCAGTCATTGTCTCC 57 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000068147 1 1 4 87 1 215109216 215109234 CTTCTTGCTGTCAGTCCAG 58 215057753 215057771 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Car2 ENSRNOG00000009629 ENSRNOT00000013354 3 1 1 85 2 88111628 88111646 TAAGGTTGCTTCCAAGAGC 58 88105019 88111579 CTTTCAGCACTGCAAAGTC 58 NA Rattus norvegicus 81 AABR07054723.1 ENSRNOG00000036747 ENSRNOT00000051082 2 1 1 80 3 167788706 167788979 GCATGAAAGAACACATACAGGA 59 167789019 167789038 TTCAGATCACTTCTTCGTGC 58 NA Rattus norvegicus 81 Nap1l5 ENSRNOG00000007808 ENSRNOT00000010263 1 1 1 85 4 89150635 89150653 GAGGAAGAAGAGGAGGCTG 59 89150309 89150587 AGTCTCAAGTCTGTCAGCTG 60 NA InUTR Rattus norvegicus 81 Hoxb5 ENSRNOG00000008010 ENSRNOT00000010724 3 1 1 84 10 84152823 84153517 ATCAGCCACGATATGACTGG 60 84153564 84153582 ATTCCTTCTCCAGCTCCAG 59 NA Rattus norvegicus 81 Vps11 ENSRNOG00000010733 ENSRNOT00000065456 1 1 1 80 8 48684771 48684791 CTTTATCTGGCTGAGAACCAC 59 48684595 48684734 GGCTTCCTGATAGTTCTTAATGTC 59 NA Rattus norvegicus 81 Mir34a ENSRNOG00000035623 ENSRNOT00000053746 1 1 1 60 5 167092494 167092513 GCTGTGAGTAATTCTTTGGC 58 167092533 167092554 TGCTTCCTTAGCTAATACTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502660 ENSRNOG00000031514 ENSRNOT00000050168 3 1 1 60 3 103556932 103556951 AGAAAGCACAAAGCCATCTC 59 103556971 103556992 CAGTGTGAATGAAGAACATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171,ENSRNOT00000016341 1 2 2 80 3 11335504 11335622 GGAGACAGACACTATTGGAGAG 60 11335663 11335681 TCCTTCTCCAAATGCCGAG 60 NA Rattus norvegicus 81 Synpo2l ENSRNOG00000008949 ENSRNOT00000011956 3 1 1 80 15 4064797 4066022 TACAGGTATCTAAGATCCGAAGAC 59 4066060 4066079 CGTTGATCGATAAGAGCTGG 59 NA Rattus norvegicus 81 RGD1564999 ENSRNOG00000046403 ENSRNOT00000044132 1 1 1 80 17 57763363 57764382 ATAGAATGTCTCCAGGTCGG 59 57763302 57763320 CTGCAGCTGGTGTTTATCG 59 NA Rattus norvegicus 81 Eif1ad ENSRNOG00000020463 ENSRNOT00000027753 2 1 1 85 1 220748075 220748093 CAGCAAGAGGAAGCATGTG 59 220748139 220748306 TCCTGAGGACTTTCACTATCTG 59 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 1 2 2 80 1 31730601 31731454 ATATCCAGACATCAGAGATGACC 59 31731494 31731512 ATGGTCTGCTTCATGTCCC 60 NA Rattus norvegicus 81 Rps16 ENSRNOG00000019578 ENSRNOT00000026576 1 1 1 80 1 85406081 85406190 CAAATTTATGCTATCCGGCAG 58 85405928 85405948 CTTCTTAGAGGCTTCATCCAC 58 NA Rattus norvegicus 81 Tpra1 ENSRNOG00000016665 ENSRNOT00000022534 2 1 1 80 4 120851981 120852001 GGATTTCAACATCTATGGCCA 59 120852043 120852140 ACCAGTGAGTAGACCAGGA 59 NA Rattus norvegicus 81 Atp1a3 ENSRNOG00000020263 ENSRNOT00000027497 3 1 1 80 1 81863226 81863244 ACACTGAGATCGTCTTTGC 58 81862870 81863182 CAATTGCTCCCTGTCTCTG 58 NA Rattus norvegicus 81 RT1-M1-1-ps ENSRNOG00000061923 ENSRNOT00000088528 2 1 1 80 20 2436554 2436815 GAGAAATGAGATCCTACAAAGGG 59 2436496 2436516 CTGGATTGCATGATAACCTGG 59 NA Rattus norvegicus 81 Ska1 ENSRNOG00000015275 ENSRNOT00000020637 1 1 1 80 18 70179582 70181214 AACAGTTCACTCAAGGAGC 58 70179520 70179540 GGAAGGAATGTGTTCTTTGAG 57 NA Rattus norvegicus 81 Ccng2 ENSRNOG00000002089 ENSRNOT00000002876 2 1 1 80 14 16270348 16270367 CCACAACAGCTACTACAGTG 58 16268941 16270305 GAGTCCTCACTCTCACTCC 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361,ENSRNOT00000077941 2 2 2 80 2 179648616 179648639 TCCTTAGCTTGATTGAGTACTACC 60 179638744 179648579 CTTGCAGTGTTGATAAGCCTC 60 NA Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000064792,ENSRNOT00000037399 2 2 2 80 3 11406265 11406288 CAGTCAAGAGAAACATCTTCAGAG 60 11406326 11406465 CAGGAAGTCCACACCATAGG 60 NA Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000021956 3 1 2 81 9 43134321 43134339 GTGCAGAATTTGAGGACGG 59 43134143 43134277 AGTTCACCATCCACAAGGAG 60 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 1 3 3 80 11 67635525 67635544 AGGAACACTGACTTGAAGAG 57 67635587 67637690 TCTGTAAGACTGGGTTGGA 58 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342,ENSRNOT00000030352 2 2 2 85 4 22654127 22655960 CCATTCCCTAAAGGCAAGTG 59 22654061 22654080 CATGCTTTCTTGCTCTCCTC 59 NA Rattus norvegicus 81 Foxd2 ENSRNOG00000007759 ENSRNOT00000010201 2 1 1 60 5 133709669 133709687 AGATCATGTCCTCCGAGAG 58 133709627 133709645 ACGTCTATATCTGCGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 3 1 1 79 19 54553783 54574634 AGACCTACTCGGATGGAGG 60 54574677 54574695 GACACTCTGTCGTACACCA 59 NA DesignNoJunction Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 2 2 2 80 1 100892388 100892406 TGGATGTGCAACTGAACTC 58 100892450 100892659 CAATGAGGGTGATGCTGTC 59 NA Rattus norvegicus 81 Mmp10 ENSRNOG00000032832 ENSRNOT00000013119 3 1 1 89 8 5734464 5735119 GATCTTGCTCAGCAATACCT 58 5735171 5735189 GACAACAGGACTACTGTCC 57 NA Rattus norvegicus 81 Atl1 ENSRNOG00000005063 ENSRNOT00000046085 3 1 1 80 6 92362318 92362812 AGTCCATGTTACAGGCCAC 60 92362852 92362874 CCATCTTCTTGTTGTATGTGTCC 60 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203,ENSRNOT00000025217 2 2 2 80 18 70970768 70971072 GTGTTCACTTTAAGAACACCC 58 70971114 70971132 CCTTCAGATACTTGGTGGC 58 NA Rattus norvegicus 81 LOC100362384 ENSRNOG00000031540 ENSRNOT00000044575 2 1 1 60 13 89254000 89254018 TGACTTCTTGGAAAGCCAC 58 89254040 89254060 GTTGCCCATCTTCTTGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362384 ENSRNOG00000031540 ENSRNOT00000044575 3 1 1 60 13 89253992 89254011 CACCTTTGTGACTTCTTGGA 58 89254033 89254052 TCTTCTTGATGAGCTTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snw1 ENSRNOG00000037998 ENSRNOT00000057807 2 1 1 80 6 111488014 111488032 TGAAATCCGTCATGACAGG 58 111486548 111487972 AGTTTGGACCTCTTATCAGGA 58 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342,ENSRNOT00000024162,ENSRNOT00000091561,ENSRNOT00000081940,ENSRNOT00000074087 2 6 6 80 17 77195853 77195871 TTCTGCGATTGAGACCCAG 60 77195914 77196912 ACTTCGATTCCCACACTCTC 60 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000066855,ENSRNOT00000091978 3 2 2 81 10 85993694 85993712 GAGCGTGATGAGCTAACAG 58 85993539 85993649 GGGCTGTGAATACACTGTC 58 NA Rattus norvegicus 81 Olr654 ENSRNOG00000047650 ENSRNOT00000042667 2 1 1 60 3 77169601 77169621 TGCTTTACTACTCATGGTGCT 60 77169561 77169580 GTAGTGGTTGATGTGGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561114 ENSRNOG00000030956 ENSRNOT00000057099 2 1 1 96 18 41898799 41898817 TCACTCTTGCTTTCAACGC 59 41898596 41898739 ATTCTCCACCTGGTCTGTG 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283,ENSRNOT00000090375 3 3 3 80 1 215281837 215283882 CCAGGAACACATCAACATACAC 60 215281778 215281796 GTTTCCAGCTCCTTCTCCT 59 NA Rattus norvegicus 81 Six6 ENSRNOG00000006296 ENSRNOT00000008880 2 1 1 140 6 95817352 95817370 CCTTCAGGACCCATATCCC 59 95817474 95818474 TGCTGGAGTCTGTTCTTGG 60 NA Rattus norvegicus 81 LOC100909740 ENSRNOG00000047484 ENSRNOT00000072302 3 1 1 103 4 82193195 82194362 CCATCGATCCCAATAACCC 58 82193110 82193128 TTCTTTCTCCAGTTCCAGC 57 NA Rattus norvegicus 81 Tmem229b ENSRNOG00000010646 ENSRNOT00000014132 3 1 1 81 6 102155475 102166220 AGACTGTGACAACAGGAGG 59 102155412 102155431 CATATAGGTACCAGCGGGAC 60 NA InUTR Rattus norvegicus 81 RGD1561226 ENSRNOG00000048835 ENSRNOT00000040280 1 1 1 83 14 15724264 15725031 AATCAAGTCCTAGGGTGCC 59 15725077 15725096 GGAATCCAAGTCGTTCTGTG 59 NA Rattus norvegicus 81 Ift74 ENSRNOG00000008075 ENSRNOT00000011336 1 1 1 80 5 113676658 113676680 GAAGCTGACTACAGATTATGAGG 59 113676717 113680990 CTCTCCAAGTTTGTAAGCTGAG 59 NA Rattus norvegicus 81 Slc39a14 ENSRNOG00000009832 ENSRNOT00000013067 2 1 1 80 15 51987526 51987545 TCACTTCTCTGCAAACTGGA 59 51986137 51987484 ATCTCAGGGAACATATCGGC 60 NA Rattus norvegicus 81 Olr527 ENSRNOG00000050009 ENSRNOT00000043964 1 1 1 60 3 74448182 74448200 TCTCTGTGCTGTTTCTCCT 58 74448140 74448158 AGTATCATGCCTGTGTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clic3 ENSRNOG00000015184 ENSRNOT00000020497 2 1 1 89 3 2677943 2678043 CACATTGTGGATACCGTGTG 59 2678094 2678113 CAATGCACTGTCCAAGTAGC 60 NA Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 2 2 2 80 8 48440269 48441148 ACCAACAGCTTTGTACCTG 58 48441192 48441210 CTTCCAGGCTGAAGTTGTG 59 NA Rattus norvegicus 81 Tas2r126 ENSRNOG00000017881 ENSRNOT00000024048 2 1 1 60 4 71837038 71837056 GGTTGAAGTGGAGATTCCC 58 71837080 71837098 GACACCAAGATAGAGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 3 2 3 65 9 50968836 50968857 ACAGATGAATCCCTGTATCCAG 60 50968883 50970326 ATCAATCCGTAGCTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Tubb6 ENSRNOG00000018371 ENSRNOT00000024947 2 1 1 115 18 63131111 63131129 GGAAGTGATCAGCGATGAG 58 63131205 63132709 CGTACTTCTTAGAGGATGACTC 58 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000087638 2 1 5 60 20 3405230 3405249 TCCTGCATCTGTTTCAAGGT 60 3405189 3405210 TTATGACAACTCTGTGAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp24a1 ENSRNOG00000013062 ENSRNOT00000046011 1 1 1 80 3 168111363 168111382 CACTGCTAGGGAGTCTACTG 59 168111144 168111320 TCTTGTGGTACTCTGCCAG 59 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546,ENSRNOT00000089456 1 2 2 80 1 256679819 256680357 GGATTTCCAGATCCGTGTC 58 256679757 256679775 ACGTGAACTTTCACCACAG 58 NA Rattus norvegicus 81 Rnase3 ENSRNOG00000031445 ENSRNOT00000040857 3 1 1 67 15 28217591 28217609 TGATTTCCAGGACAGCCAG 60 28217382 28217560 TCAGACCCATGTTTCCCAG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 C1ql1 ENSRNOG00000002963 ENSRNOT00000003986 3 1 1 63 10 91046585 91046603 CAGATCTCTGCAAGAACGG 58 91040603 91040622 TAGTTCTGGTCAGCATCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000088892 1 4 7 80 1 102930492 102931622 CTGGTTAAGGGCTTATATGGGA 60 102931662 102931681 GTCTGTGATGCCACTTTGTC 60 NA Rattus norvegicus 81 Dhrs11 ENSRNOG00000027891 ENSRNOT00000030841 3 1 1 89 10 72150000 72150018 ATCTGCATCAACAATGCCG 59 72146428 72149949 CACGTTCACATTGAACATGTC 59 NA Rattus norvegicus 81 Ipmk ENSRNOG00000000609 ENSRNOT00000000748 2 1 1 80 20 18465949 18465967 TCTGACAGCTACGAGACAC 59 18461998 18465905 AAACTTGGAGACACCCTCC 59 NA Rattus norvegicus 81 Kcnk13 ENSRNOG00000047363 ENSRNOT00000075794 3 1 1 87 6 123975216 124075603 TAACTACCATAGGGTTCGGG 58 124075653 124075671 CTCGCACATCCAATGAGAC 59 NA Rattus norvegicus 81 Olr597 ENSRNOG00000032521 ENSRNOT00000049471 2 1 1 60 3 76044806 76044827 CTGCATCTTTACCGATGTTGAG 60 76044847 76044866 CTTGTACCGATCAAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550196 ENSRNOG00000021551 ENSRNOT00000035071 3 1 1 80 3 170456770 170457720 GAACCGACTGAAAGATGCTC 59 170456709 170456727 TCTGTTCTCTGCTTCGTGG 60 NA Rattus norvegicus 81 Cox5b ENSRNOG00000016660 ENSRNOT00000022487 3 1 1 81 9 43260354 43260372 CCCTACTGATGAGGAGCAG 59 43260414 43260597 CATATTGTATGGATCCAGTCCC 58 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 2 2 2 85 3 11773729 11782760 CTATGTGAAGTTCTCCAAGGAG 58 11782806 11782824 TGAGCTTCAGCTCTTCCTC 59 NA Rattus norvegicus 81 Ubac1 ENSRNOG00000017983 ENSRNOT00000024352 2 1 1 81 3 3463645 3463848 AAGGCAAATGCTATGTTGGA 58 3463583 3463601 GAAAGCCCATCTCTGTGAG 58 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000089257 1 1 3 80 20 3399697 3399715 GGACATCACGGTACTTTGG 58 3398698 3399655 CATGGTAATAAACCTGCAAGG 57 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000089257 3 1 3 81 20 3399697 3399715 GGACATCACGGTACTTTGG 58 3398697 3399655 ACATGGTAATAAACCTGCAAGG 59 NA Rattus norvegicus 81 Apoc2 ENSRNOG00000018402 ENSRNOT00000024800 2 1 1 81 1 80589273 80589760 GAAACTGAGGGACATGTACAG 59 80589212 80589231 GAGAGTAAGGAGCTGGTCTG 59 NA Rattus norvegicus 81 Hoxd9 ENSRNOG00000001580 ENSRNOT00000065426 3 1 1 81 3 61621026 61621391 CAACTTGACCCAAACAACC 57 61621435 61621454 GGTATTTGGTGTAGGGACAG 58 NA Rattus norvegicus 81 Acmsd ENSRNOG00000003884 ENSRNOT00000005206 3 1 1 81 13 44459728 44468286 TAGGGAAGGATAGAGTTATTCTGG 59 44468322 44468344 ATAGACTCTATCAACTTCCCAGG 59 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 3 2 3 235 20 3439936 3439954 ACCATCTCCACACCATGAC 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000080822 1 1 3 68 20 3439751 3439769 CCTCGAGTGGTGAGTATCG 59 3439701 3439719 GTTGTTCCCAAAGGTACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp12 ENSRNOG00000033411 ENSRNOT00000044038 1 1 1 81 12 10085224 10085242 TAACACTTCAGGAGACGCA 59 10085287 10086413 ATTGGGACCACTTCCACAG 60 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 2 4 5 81 9 43834351 43834369 AGGAAGTATCCAGCCAGGA 60 43834414 43844719 TTCTTCCTGCCTTTCCCTC 59 NA Rattus norvegicus 81 Tbc1d20 ENSRNOG00000005766 ENSRNOT00000008713 2 1 1 80 3 147785304 147785478 CACCTCAGGGATTTCATGGA 60 147785521 147785539 CACTTGGTCAATGATGGGC 59 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000029046 ENSRNOT00000042095 3 1 1 61 12 10966577 10966600 CGGATGAAAGTTAAGAAACTACCC 60 10966412 10966433 TACTTAAACCTCTTCAGGTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Pnpt1 ENSRNOG00000003600 ENSRNOT00000004919 3 1 1 80 14 113536166 113536277 GCAATTAATGGCGCTTCTG 58 113537153 113537172 CATTCCTATTCGTACTGCCC 58 NA Rattus norvegicus 81 Mir199a2 ENSRNOG00000029459 ENSRNOT00000044190 2 1 1 60 13 80125523 80125543 GTTCAGACTACCTGTTCAGGA 59 80125564 80125583 CCAGTCTAACCAATGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304870 ENSRNOG00000029479 ENSRNOT00000051823 1 1 1 60 10 76281164 76281182 GTGTTCAGAGAAGACGCCT 60 76281203 76281224 GAAGCAGAGGAGTAGAATAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbcb ENSRNOG00000020781 ENSRNOT00000028211 2 1 1 80 1 91046340 91046358 CGGAGAATATGAGGACGTG 58 91046402 91046822 CGAACTGTGTTCTGTCTCC 58 NA Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 3 1 1 83 3 11088921 11101625 CATGTCTAGCTGGGAGCTC 60 11088856 11088874 TACCAGGGATAGTTCACCC 58 NA DesignNoJunction Rattus norvegicus 81 Spata7 ENSRNOG00000003955 ENSRNOT00000005297 2 1 1 83 6 122639839 122639858 TTTAACTCTGAGCTTGGGAC 58 122639902 122642899 TCTCATGTAATTAGGTGCCTG 58 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767,ENSRNOT00000013331 1 2 2 80 15 23580278 23580296 CGGCCTTCTGCTATATGCT 60 23576519 23580237 CATCAAATGCTATGATGTGCCA 60 NA Rattus norvegicus 81 Foxe3 ENSRNOG00000007770 ENSRNOT00000010208 3 1 1 71 5 133725426 133725444 TCTTATCGCTATGGCCCTG 59 133725373 133725391 GTGATGAAGCGGTAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_1636.2 ENSRNOG00000055662 ENSRNOT00000084019 2 1 1 60 4 163558964 163558983 GTTTAGTTTCAGCTTCAGCC 57 163559006 163559024 ATCAAAGCCAAAGTTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Batf3 ENSRNOG00000003716 ENSRNOT00000004962 2 1 1 100 13 109715829 109715848 CAGGAAGGTTCGAAGAAGAG 58 109715911 109724650 GACTCTCATGTTCCTCGTG 58 NA Rattus norvegicus 81 Cbx1 ENSRNOG00000008689 ENSRNOT00000011665 1 1 1 80 10 84670040 84670575 AAAGGTTTCTCAGATGAGGAC 58 84670614 84670635 CTGTAGAAACTCAGCAATAAGG 57 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210,ENSRNOT00000084595,ENSRNOT00000083528 1 3 3 80 14 114567426 114567448 GTCACTTACTACCACTACTTCTC 58 114566724 114567387 AGCATTATCAAGCACCTTCC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000008210,ENSRNOT00000084595,ENSRNOT00000083528 2 3 3 80 14 114567425 114567447 TCACTTACTACCACTACTTCTCC 59 114566723 114567387 TAGCATTATCAAGCACCTTCC 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 2 2 2 80 4 163393744 163395472 TCACCCAACGAGTTAACAC 58 163393682 163393701 TTCTGTGTAGGCCTTAAAGC 58 NA Rattus norvegicus 81 Hsdl1 ENSRNOG00000015576 ENSRNOT00000020859 3 1 1 85 19 52211478 52215695 GTCCCATTCTATTCAGTTCCT 57 52211413 52211431 GTAAAGAGCGGTTGAGGAG 58 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266,ENSRNOT00000017550 1 2 2 80 X 122952625 122952645 AACCGGATCTCAGTATTCCAC 60 122952681 122960246 GCTCATAGAACAATCTCATACACAG 60 NA Rattus norvegicus 81 LOC100909796 ENSRNOG00000009770 ENSRNOT00000012938 3 1 1 60 3 74737639 74737659 AGCTTTCTCTACATGTGGGTC 60 74737599 74737622 GAATAGAGTACCATAGAACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r99 ENSRNOG00000053093 ENSRNOT00000085001 2 1 1 60 4 121969356 121969377 CACACTGATTCTCACATAAGGG 59 121969317 121969336 TGACTGAGATTCCAATGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543,ENSRNOT00000050994 1 2 2 84 4 78750318 78754696 CTTCGATTAAGATCGCGCC 59 78750252 78750270 TTGAACTGAGCCTCTGGTG 60 NA Rattus norvegicus 81 Athl1 ENSRNOG00000014783 ENSRNOT00000020004 1 1 1 80 1 213741998 213742081 GCACAGGATTCAGGATCAC 58 213742124 213742143 CAGAGACAGAGACTTTGGAG 57 NA Rattus norvegicus 81 LOC100909940 ENSRNOG00000061224 ENSRNOT00000080494 3 1 1 60 3 74782063 74782081 TTCATGCTTGCTGTGATGG 59 74782021 74782040 TATAGAGCAGTGGGTTGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med22 ENSRNOG00000049749 ENSRNOT00000066193 1 1 1 80 3 5454395 5456451 CTCGTCCAGCTCAAGTCTC 60 5454333 5454351 GAATCTGTGTCGAGGTCCA 59 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 2 2 2 80 X 72686321 72686339 GAACCTAGGCTCAGAGGAC 59 72686383 72686543 TCCTTGTTCCCTGACTTGG 59 NA Rattus norvegicus 81 Atad5 ENSRNOG00000021903 ENSRNOT00000035642 3 1 1 80 10 67450849 67450868 GTACCAGCCTCAGAATTCGA 60 67450909 67452230 TTCCAATCCTTCAACCAACTG 59 NA Rattus norvegicus 81 Eif4ebp2 ENSRNOG00000055391 ENSRNOT00000082448 1 1 1 66 20 31072126 31072144 CTCAGGACTACTGCACCAC 60 31058369 31072096 ATGATTCGTGTTCCTCCCG 60 NA DesignRelaxed Rattus norvegicus 81 Rn60_X_0683.1 ENSRNOG00000051137 ENSRNOT00000076199 1 1 1 60 X 67362028 67362049 GTAGTCCTTGGTCAGTATCTGG 60 67361989 67362009 TTAGCCATTCTCAGTTGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myoc ENSRNOG00000003221 ENSRNOT00000004386 3 1 1 80 13 80525309 80526681 AAGAGGGAGACAAAGGATGTG 60 80526722 80526741 TTCCAGTGATTGTCTCAGCT 59 NA Rattus norvegicus 81 Olr828 ENSRNOG00000048689 ENSRNOT00000051285 3 1 1 60 4 148624207 148624226 GTGCTTCCTTCTCGTTACTG 59 148624247 148624267 AACTGGAATGGACATGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc73 ENSRNOG00000022660 ENSRNOT00000041362 3 1 1 80 3 94980649 94980670 GTTTGGATACTGAATACAGGGA 58 94980709 94981707 CAAGAGGCTGTAAGTCTTCTG 59 NA Rattus norvegicus 81 Gatb ENSRNOG00000037655 ENSRNOT00000075823 2 1 1 80 2 184602566 184628454 GAACTTTACCGGTTCTCAACAG 60 184628492 184628513 TCTTGTTTATGTGGCAGTTCAG 59 NA Rattus norvegicus 81 Faslg ENSRNOG00000002978 ENSRNOT00000003998 2 1 1 129 13 79705391 79705409 ACATAGAGCTGTGGCTACC 59 79704594 79705298 CTGTGGTTGGTGAACTCAC 59 NA Rattus norvegicus 81 Ifitm3 ENSRNOG00000015078 ENSRNOT00000020265 2 1 1 81 1 213811003 213811528 CTGTGAAGTCTAGGGATCGG 59 213810941 213810959 ATGTTCAGGCATTTGGCAG 59 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457,ENSRNOT00000066268 1 2 2 80 5 147261995 147262015 GGAATTTGGCCATTACAGGAG 59 147262055 147263870 CACCAATACCAACGCTAACAG 60 NA Rattus norvegicus 81 Usp26 ENSRNOG00000029106 ENSRNOT00000047605 2 1 1 98 X 139068904 139068923 TAAAGGTTGTTCTCCCTTGG 58 139034220 139068846 GTTTGTTTCCTAAGTTCACCAG 58 NA InUTR Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 2 2 2 113 1 90952694 90953343 AAGCCTCAGGACAAGAAGAG 60 90952508 90952526 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Dbx1 ENSRNOG00000014706 ENSRNOT00000019739 3 1 1 91 1 104972464 104973289 CAGAAGAGAAACTTCGCCG 59 104972391 104972409 TGATGAAGGGTTGGAACGA 59 NA Rattus norvegicus 81 Zfp827 ENSRNOG00000011697 ENSRNOT00000015929 1 1 1 80 19 32404049 32404067 TTGCTGGTCATCTCTGTGG 60 32403669 32404007 AACACATTCGAACCCTTTCTC 59 NA Rattus norvegicus 81 Pcdhb4 ENSRNOG00000027469 ENSRNOT00000027210 3 1 1 60 18 30388526 30388546 GAAATGCTCCTAACAATCCCT 58 30388566 30388586 CTGCCTTTAGAGGAAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnmt3l ENSRNOG00000001212 ENSRNOT00000001610 3 1 1 80 20 11356633 11356651 ACACCAGAGCTACTGTACC 58 11355954 11356590 CAGTAGCATCTGGTACAGTC 58 NA Rattus norvegicus 81 Rab4b ENSRNOG00000001500 ENSRNOT00000002052 3 1 1 80 1 83984981 83985000 AACAAGAAGGACCTGGATCC 60 83983451 83984940 GAACATCAGCTCATTCTCCTG 59 NA Rattus norvegicus 81 Pcdhb8 ENSRNOG00000020073 ENSRNOT00000027190 1 1 1 60 18 30437380 30437398 TCTGACTGAAGACTCTGGG 58 30437422 30437440 ACTGGTGGGAATGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912836 ENSRNOG00000023469 ENSRNOT00000047532 1 1 1 80 2 102452256 102453029 TGAAAGTGTCCTGAGAGTCC 59 102453069 102453090 TTGAAGTCGCTGTAAGAAAGTC 59 NA Rattus norvegicus 81 Sec16a ENSRNOG00000019122 ENSRNOT00000064083 2 1 1 80 3 3871986 3872202 GCTCAAATCACAGTTTGCCA 60 3871925 3871944 ACTGAGCGTACTCATAAGCC 60 NA Rattus norvegicus 81 Pqlc1 ENSRNOG00000059215 ENSRNOT00000089389 2 1 1 81 18 76770337 76776399 ATACTCTTCTGGTTTGGCAG 58 76776442 76776461 GCATCAGTAGCATCGTAAGG 59 NA Rattus norvegicus 81 Rn60_13_0855.2 ENSRNOG00000051083 ENSRNOT00000076593 3 1 1 61 13 80539437 80539584 CCTGCAAAGAAGAATGTGCT 59 80539607 80539626 TCACTCCTGTGATTTCTTGC 58 NA DesignRelaxed Rattus norvegicus 81 P2ry13 ENSRNOG00000029756 ENSRNOT00000051027 2 1 1 60 2 149431911 149431935 CAATTCCACCTTTATCATCTACCTC 60 149431875 149431896 TAGTGTCATTATCAAGTCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h15 ENSRNOG00000005256 ENSRNOT00000007276 2 1 1 81 3 71037085 71037571 AGGTGATGAGGTTGATGACTC 60 71037613 71037632 CCCTGTCTCTTCCACATCTC 60 NA Rattus norvegicus 81 Olr386 ENSRNOG00000056884 ENSRNOT00000084162 1 1 1 60 1 64491698 64491716 TCTCATCATCGCTCTCACC 59 64491740 64491758 CAGGAAGAAGTACATCGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C5ar1 ENSRNOG00000047800 ENSRNOT00000073034 3 1 1 64 1 78195120 78195138 ATCGTTGGTCACCACAGAG 60 78188471 78188491 CACTGCTGTCGTTACTTATGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr235 ENSRNOG00000050756 ENSRNOT00000048370 1 1 1 60 1 172051606 172051624 GCTACTCCACTCTCATGTC 57 172051648 172051666 CCCGCATAGGAAATAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hps3 ENSRNOG00000031406 ENSRNOT00000050440 1 1 1 80 2 104815453 104819311 GTCATCACAAGCCAAAGCC 60 104815391 104815411 GTCCATGTATAGGTCCTCCTC 59 NA Rattus norvegicus 81 Kpnb1 ENSRNOG00000009275 ENSRNOT00000012376 3 1 1 80 10 85100602 85100622 CCTGCAGTCTAACATCTTACC 58 85100238 85100561 CTGTGGACATTCTCATTCCC 58 NA Rattus norvegicus 81 Chordc1 ENSRNOG00000026643 ENSRNOT00000030569 1 1 1 101 8 17425047 17432187 ATGCCCTAAAGGGTTGGTC 60 17433159 17433181 GCTTCTCACTATTATGCCTACCT 60 NA Rattus norvegicus 81 Nt5dc3 ENSRNOG00000026793 ENSRNOT00000031871 1 1 1 80 7 27344140 27344161 AAGAGGTCATTGACATGTACGA 60 27344202 27345218 TCCCGTGAGAACTCTTTCC 59 NA Rattus norvegicus 81 AABR07017707.1 ENSRNOG00000047808 ENSRNOT00000070991 1 1 1 95 15 30270773 30270909 CTCCTCATCCTCACAAGGG 59 30270962 30270986 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Nxf2 ENSRNOG00000011729 ENSRNOT00000015806 3 1 1 80 X 105785490 105785511 CTATAATGAAACGGTATGACGC 58 105785274 105785449 CCTTGTCCATCAAGTCCTG 58 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593,ENSRNOT00000005858 1 2 2 80 6 44265615 44267027 CTCTCAACAGAAGGGACAC 58 44267070 44267089 GCTTTGTGAGATCAAAGGAC 57 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 2 2 2 80 14 21996858 21997904 CAAGTTCAGATGAGACATCCT 58 21995118 21995137 ATATTGGGAGAGTTGTGGGA 58 NA Rattus norvegicus 81 Spert ENSRNOG00000047413 ENSRNOT00000072138 2 1 1 138 15 57643929 57650547 AATGTGATTCTACCTCAGAGGG 59 57643812 57643830 GGTTGAGTGGGTAGGAGTG 59 NA Rattus norvegicus 81 Sfmbt2 ENSRNOG00000029235 ENSRNOT00000065942 3 1 1 80 17 71825923 71837762 GAAGTATTTAAGGACCATGCAGAC 60 71825866 71825887 ATCATTGATGTGCAATGTCTCC 60 NA Rattus norvegicus 81 Noxred1 ENSRNOG00000047312 ENSRNOT00000074037 3 1 1 88 6 111266856 111266874 TTACAGGGTCGTTACCGAG 59 111260862 111266804 AGCAGTTTGCTCAAATCGT 58 NA Rattus norvegicus 81 Socs6 ENSRNOG00000038212 ENSRNOT00000058179 3 1 1 183 18 85980711 85980731 TGCCTCCATAAGATTTGTCTG 58 85965387 85965406 TCCTGAAGGTCTTCAGACTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Basp1 ENSRNOG00000046313 ENSRNOT00000073915 1 1 1 60 2 77587227 77632424 CGAACTCCAAGATGGGAGG 60 77587185 77587203 TCGTCGTTCACATTGTAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rpl39 ENSRNOG00000043348 ENSRNOT00000064521 3 1 1 106 X 123707221 123707240 CAGAATCAAGCGATTCCTGG 59 123705413 123707156 GTCTTCTCTTAGAGTTGTACCTG 58 NA Rattus norvegicus 81 C6 ENSRNOG00000024115 ENSRNOT00000033112 2 1 1 80 2 54466359 54466378 CACTACCCATGGACTCACTG 60 54466418 54467972 CACTACGATTTGTCTCTGTCTG 59 NA Rattus norvegicus 81 Hsf2 ENSRNOG00000000808 ENSRNOT00000001059 1 1 1 80 20 38945368 38945536 GCTAAATATGTATGGCTTCCGT 59 38945577 38945595 AATTCAACAGGGCCATCTC 58 NA Rattus norvegicus 81 Tbxa2r ENSRNOG00000020585 ENSRNOT00000027932 3 1 1 81 7 11254786 11254804 GTGAGGTGGAGATGATGGT 59 11253902 11254741 AGGATGAAGACCAGCAAGG 59 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535,ENSRNOT00000050764 2 2 2 84 2 127723012 127723030 CATATGTCCATGTGCCAGC 59 127721796 127722964 GCTACATTTCCTGCTCCGA 60 NA Rattus norvegicus 81 Olr308 ENSRNOG00000050992 ENSRNOT00000047834 1 1 1 60 1 213288295 213288314 CCTAGATCCAGCTACAACCC 59 213288337 213288355 TGAGGACCGAGTATAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr63 ENSRNOG00000014893 ENSRNOT00000020141 1 1 1 80 2 251921677 251927139 ACTTATGGCCAAGAAACCTG 58 251921616 251921635 TTGAAGAAAGGTGACCTCTG 58 NA Rattus norvegicus 81 Dok6 ENSRNOG00000038190 ENSRNOT00000058139 3 1 1 80 18 86878077 86878095 GGCCTCCAACTTTAACGAC 59 86719607 86878034 CAGCATCGTCTGAATATCCC 58 NA Rattus norvegicus 81 Chrna1 ENSRNOG00000018286 ENSRNOT00000024706 1 1 1 80 3 60446195 60446816 AGTCTAACAATGCGTCTGAG 58 60446134 60446152 ACACCAGCATAAAGACTCC 57 NA Rattus norvegicus 81 Ccs ENSRNOG00000047816 ENSRNOT00000073983,ENSRNOT00000091787 3 2 2 82 1 220075542 220075657 ATTCTGGGAAGAGGTTGGC 60 220075478 220075496 ATCACAGGAGCAGATCTGC 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144,ENSRNOT00000079727 2 2 2 80 3 103845788 103846706 TGGTGGAGATGCATGACAG 60 103846750 103846768 GAAGCATCTGGGACCTCTG 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144,ENSRNOT00000079727 3 2 2 80 3 103820410 103821116 CACTCTTTGAGGAAGAAATGGA 58 103821154 103821175 GTGTCAGATTTGTATAGTTGGC 58 NA Rattus norvegicus 81 Wipf2 ENSRNOG00000027849 ENSRNOT00000029021 1 1 1 80 10 86801765 86801783 AAGACATCTGCAAAGGGAC 58 86801827 86802516 CTTTGGGCTTCTCGATGAC 59 NA Rattus norvegicus 81 Cpsf4 ENSRNOG00000000985 ENSRNOT00000042474 3 1 1 81 12 11200806 11203682 CACTTGCTACAAGTGTGGTG 60 11200744 11200763 TCACTGTCCACTGAGAAAGG 59 NA Rattus norvegicus 81 Eml5 ENSRNOG00000004207 ENSRNOT00000057601 2 1 1 80 6 122838867 122838885 AATAGATGACAGCCACACC 57 122837767 122838825 TTATCTTTACTGCCTCTTGCC 58 NA Rattus norvegicus 81 Fam96b ENSRNOG00000011865 ENSRNOT00000015811 2 1 1 80 19 551886 552064 GATCTTCGATCTTATTCGCTCC 59 552105 552123 CGAACCTGCTCTACTACGT 59 NA Rattus norvegicus 81 Pcdhb9 ENSRNOG00000020072 ENSRNOT00000027188 2 1 1 60 18 30476249 30476268 GCATCTTCAGAGTTGGAGAC 58 30476291 30476309 GAGATAGAGCAAACCGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000089879 3 1 5 92 18 79352049 79372050 AAGGCCAGTAAGGATGGTG 59 79372106 79372124 ATCACTGTCTTCTGAGGCG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793 3 7 8 80 6 64814376 64814394 TCATCTGCAGAGCTAACGG 60 64814435 64821510 CATCGAGAGCAATTTCTACTGG 59 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 2 2 2 81 18 35728809 35728827 TCTACTCACACGGATCTGC 59 35723745 35728766 TCAATACGACTATTCAACCGC 59 NA Rattus norvegicus 81 Fam229b ENSRNOG00000024918 ENSRNOT00000036853 3 1 1 89 20 44219171 44219192 GTTGTGAGAAAGTCCTTACGAG 59 44210587 44219121 TCACATAGCTTCCTGCCTG 60 NA InUTR Rattus norvegicus 81 AABR07017768.1 ENSRNOG00000046840 ENSRNOT00000060420 3 1 1 80 15 30812618 30812813 CAGATTTGCTGGGTGAGAG 58 30812856 30812875 CAGAGAAGAATTGGTTCCCT 57 NA Rattus norvegicus 81 Pigt ENSRNOG00000014690 ENSRNOT00000019761 2 1 1 80 3 160947890 160947908 AACTTCATCGACTCCACCA 59 160947951 160948280 GTAGTGGTCAGTGTCATTGG 58 NA Rattus norvegicus 81 Prr15l ENSRNOG00000049162 ENSRNOT00000073292 1 1 1 60 10 84871837 84871855 GCCTGGAGAAGATTGTGGA 59 84871878 84871897 CCTGAGTTGGAGACTTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564212 ENSRNOG00000042119 ENSRNOT00000060357 1 1 1 101 15 30462686 30462704 TTCACTAGTGGTCCTGTGG 59 30462948 30462966 GAAGTCTTGGCTCCCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925,ENSRNOT00000033672 3 2 3 80 4 85289218 85289236 TCAATCCTGGAGAGGACGA 60 85288754 85289177 CAAAGAAACCCTGAAAGGACTG 60 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 1 2 2 80 10 16724114 16724133 AGGAGGAAGAAGAGGAAGAG 58 16712059 16724072 TTTCATAGCCTGGTTCAGAG 57 NA Rattus norvegicus 81 Lta4h ENSRNOG00000004494 ENSRNOT00000005930 1 1 1 80 7 34318376 34320031 TACACGACCTCTATTCAAGGAC 59 34320070 34320090 GCTTTATGTTCCTGGTAGGTG 59 NA Rattus norvegicus 81 LOC679582 ENSRNOG00000042286 ENSRNOT00000068623 3 1 1 81 13 109675924 109675942 GAGGCAGTATCCCAGAAGG 59 109675986 109677086 AGGGTGATACTGCTTCAGAC 59 NA Rattus norvegicus 81 Pex2 ENSRNOG00000008748 ENSRNOT00000011579 3 1 1 81 2 98265924 98267937 CAAGGAAAGACAGCATCAGAG 59 98267978 98267998 TGACTTATCCTCAGCACTCTG 59 NA InUTR Rattus norvegicus 81 Ttll1 ENSRNOG00000010141 ENSRNOT00000055978 2 1 1 80 7 124359295 124359314 CAGGAAGGAACTGGAGAAGG 60 124357787 124359254 GGAACGAAGTCCAGATAGAGG 60 NA Rattus norvegicus 81 Tnmd ENSRNOG00000060970 ENSRNOT00000083229 1 1 1 80 X 104684927 104685113 GTCACATTCTAAATGCAGAAGC 58 104685152 104685172 GGATACCAAACACTAGTCCAC 58 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 2 2 2 80 5 147861942 147862700 TTCCAAAGAGCCAAGTCCT 59 147861880 147861901 CTCTTCAGAAACTCCACAAACC 60 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866 1 1 2 80 1 215143863 215143882 CTGTTGCTCTTCAGGTTGTG 60 215143925 215143973 TTACAGCAGCTGGACTGAC 60 NA Rattus norvegicus 81 Tfb2m ENSRNOG00000002695 ENSRNOT00000003618 1 1 1 80 13 97837878 97837896 CAGGAACCTGGTACGAGAC 60 97837070 97837834 ATTCCTGGACCTGGATTGC 60 NA Rattus norvegicus 81 Mlkl ENSRNOG00000042353 ENSRNOT00000036972 2 1 1 80 19 43513253 43517692 TCGATCAAACAGTGAAGCC 58 43513191 43513209 TATCCAGCAGTTCCCTCAG 59 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000088000 2 1 2 90 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126622248 126622267 CTAATACGCAGAGGTCCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr1619 ENSRNOG00000048856 ENSRNOT00000046317 3 1 1 60 15 27347359 27347377 TCCTGGTTCTTCCTTTCCT 58 27347401 27347419 AACACAGTTCTCAGGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 1 2 2 80 1 36303738 36303757 TACTGGAGGGTTCTTTGTGG 59 36301932 36303696 TTACTCTGTACCTTGGGCTG 59 NA Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 1 2 2 102 10 15325080 15325098 AGTATGCATGTGGAGAAGC 58 15324436 15325017 CCACAAAGTTCACACTATTCTC 57 NA Rattus norvegicus 81 Ccl20 ENSRNOG00000015992 ENSRNOT00000021730 2 1 1 92 9 88919646 88919664 ACGTGTATCATCATGCGAG 58 88919717 88919869 ACTTCAGGTGAAAGATGATAGC 58 NA Rattus norvegicus 81 Rpa3 ENSRNOG00000008309 ENSRNOT00000011123 1 1 1 80 4 34280185 34281087 GAATTGATGGAGCCACTGG 59 34280123 34280141 TAGTATGGTTGCCTTGGCT 59 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391,ENSRNOT00000033806 1 2 2 80 14 20750015 20769501 AGAAGTAGAAGGTCACCACAC 60 20749955 20749974 TTTCTCTTATGGCGTCTCCT 59 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000081073 2 1 5 61 9 81672868 81672889 ATTACTCAGATCAGCAAGGAGG 60 81672911 81674230 GACTTCTGGTCACCTTTGC 59 NA DesignRelaxed Rattus norvegicus 81 Olr423 ENSRNOG00000031803 ENSRNOT00000044947 3 1 1 60 3 21115273 21115296 CTCTGTCTGAGGATAACATTAACC 59 21115311 21115333 TGTATAGGAGACTGTTAAGGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd302 ENSRNOG00000006623 ENSRNOT00000008987 1 1 1 86 3 46335145 46335163 CCAAGACAGGTGAATGGAG 58 46333535 46335097 TCTTGTCATATGGGATTGCTG 58 NA Rattus norvegicus 81 Olr705 ENSRNOG00000034169 ENSRNOT00000042658 2 1 1 60 3 78429561 78429579 GACAGGGCTACAATGTCAC 58 78429519 78429537 TGTCCAGCAGGATCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368,ENSRNOT00000026587 3 2 2 80 1 199394997 199395338 TTGTAGTCCTGGTGGTCAG 59 199394638 199394657 GGTCTTCGAATTCTCCTTGG 58 NA Rattus norvegicus 81 Ptges ENSRNOG00000006320 ENSRNOT00000045993 3 1 1 62 3 9736238 9736256 GAGTGACCCAGATGTGGAG 60 9728377 9728396 GGGTAGATCGTCTCCATGTC 60 NA DesignNoJunction Rattus norvegicus 81 Pcdhb13 ENSRNOG00000020062 ENSRNOT00000027172 1 1 1 60 18 30516999 30517018 CTTATCCTCACTCAACAGCC 58 30517038 30517059 GAATACTGCCACTATGATACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r103 ENSRNOG00000031836 ENSRNOT00000049487 1 1 1 60 4 167180079 167180098 ACATTCATCCCATTCACGAC 58 167180038 167180056 TCCACAGGGAGAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pate4 ENSRNOG00000039447 ENSRNOT00000060454 3 1 1 82 8 36815788 36816131 AATCTATCACGGACAACGG 57 36815724 36815742 AGTCTCCATTGTAATGCGG 58 NA Rattus norvegicus 81 LOC681241 ENSRNOG00000021898 ENSRNOT00000034474 1 1 1 80 17 86308789 86310588 GGAGAAGTTAATGCGTACGA 58 86308728 86308748 TCCTCGAACTTTAGTTGAACC 58 NA Rattus norvegicus 81 Natd1 ENSRNOG00000050567 ENSRNOT00000075751 3 1 1 192 10 47158440 47164507 CCTCAACGGATGTCATGAC 58 47157532 47157550 CTTCTGGATGTACCAGCAG 58 NA Rattus norvegicus 81 AABR07000550.1 ENSRNOG00000046617 ENSRNOT00000075461 3 1 1 86 1 17602368 17602386 AACGAAGACTGGTGGTACG 60 17602436 17605527 TCGGTACAGTGTCTCACTG 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664,ENSRNOT00000005853 3 3 3 80 13 47586401 47586420 GCTTCTACTGGTGTCTTACC 58 47586463 47587016 GCTTCTTTGTAGCTTCAGC 57 NA Rattus norvegicus 81 Sigmar1 ENSRNOG00000014604 ENSRNOT00000019795 1 1 1 89 5 58122897 58123872 GAGGTCTATTACCCAGGAGAG 59 58122828 58122846 ATACTCCACCATCCACGTG 59 NA Rattus norvegicus 81 Sigmar1 ENSRNOG00000014604 ENSRNOT00000019795 2 1 1 90 5 58122897 58123872 GAGGTCTATTACCCAGGAGAG 59 58122827 58122845 CATACTCCACCATCCACGT 59 NA Rattus norvegicus 81 Rnf213 ENSRNOG00000029658 ENSRNOT00000044983 1 1 1 80 10 108620898 108621475 AAATGACACAGAACCCACTC 58 108621516 108621536 CTTCACAGGCATCACTATAGG 58 NA Rattus norvegicus 81 Cyp2s1 ENSRNOG00000020743 ENSRNOT00000028177 3 1 1 80 1 82596473 82596644 CCTACTCCTTAGGTAAGCGAG 59 82596413 82596434 GCAAGATGGAAGTGAAGAAGAG 59 NA Rattus norvegicus 81 Rttn ENSRNOG00000038200 ENSRNOT00000058160 1 1 1 80 18 86116110 86116128 CTCCATATGCTGTCTCACC 57 86116169 86117636 TAAACACTCCTTCACAATCTCC 58 NA Rattus norvegicus 81 Rttn ENSRNOG00000038200 ENSRNOT00000058160 3 1 1 80 18 86116112 86116130 CCATATGCTGTCTCACCCA 59 86116170 86117638 CCTAAACACTCCTTCACAATCTC 59 NA Rattus norvegicus 81 Atoh8 ENSRNOG00000010716 ENSRNOT00000014277 2 1 1 145 4 100087870 100087889 TAACTACATCCTGTCCCTGG 58 100068322 100087762 TGACAGGTCACTCCTTACG 59 NA InUTR Rattus norvegicus 81 Clcn7 ENSRNOG00000016976 ENSRNOT00000023615 1 1 1 80 10 14503108 14503126 AGTAGCCTGCTTCATTGAC 58 14503170 14503636 AACTTGTCGATGTTGTCCT 57 NA Rattus norvegicus 81 Sft2d2 ENSRNOG00000003038 ENSRNOT00000004065 1 1 1 80 13 83451850 83454618 TGTTTGCTGTTGTGGAGTC 59 83451788 83451806 GGATCCCTAGAGCAAAGCA 59 NA Rattus norvegicus 81 Itpkb ENSRNOG00000002969 ENSRNOT00000004032 2 1 1 80 13 98705834 98706918 AACCAGAACATCCTGATTGC 59 98706961 98706979 GCACTTGAAGAAGGGAGAG 58 NA Rattus norvegicus 81 Nsun6 ENSRNOG00000018520 ENSRNOT00000025046 2 1 1 80 17 82058080 82058101 TCAGAGTGAATACGCATTTAGG 58 82053961 82058039 ATCCACCAAACTGCTTCTG 58 NA Rattus norvegicus 81 Col20a1 ENSRNOG00000010326 ENSRNOT00000040270 2 1 1 80 3 176507888 176508061 GCCCATGAGATCTCTGTCC 60 176508102 176508123 GGTGATCTCATATTCCACATGC 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705,ENSRNOT00000090572 1 2 2 80 15 108081473 108083384 GACAGCTTCCAAACAAAGTG 58 108081412 108081430 CATCTTTGTCAGCCTCCTC 58 NA Rattus norvegicus 81 LOC100363112 ENSRNOG00000033429 ENSRNOT00000046977 1 1 1 80 3 119354956 119354974 ACTCAATCTGCTCACCGAC 60 119355015 119376028 GTGAAGTTCCATTTCCTACACC 59 NA Rattus norvegicus 81 Iqgap3 ENSRNOG00000027894 ENSRNOT00000038589 2 1 1 80 2 187476834 187477128 GGAAATCAAGTCAAAGGTGGA 59 187477170 187477188 TAGAACCTCACCACCAGTC 58 NA Rattus norvegicus 81 Unc79 ENSRNOG00000008728 ENSRNOT00000011775 3 1 1 80 6 127047930 127047950 GAGATAACAAAGCCGTGATCC 59 127047989 127048970 TGAATTCTTTAGGTCCTTGCTG 59 NA Rattus norvegicus 81 AABR07000276.1 ENSRNOG00000016624 ENSRNOT00000022273 1 1 1 62 1 7801343 7801386 CACTAGAAGACGTGAAGAAACAC 60 7801303 7801321 TCCTTGTGTCCTTGCTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Car1 ENSRNOG00000010698 ENSRNOT00000014267 2 1 1 94 2 88217824 88217842 CTACAATCCTGCAACTGCC 59 88217900 88220206 CACCTTTCAGCACTGACTG 59 NA Rattus norvegicus 81 Ccnd2 ENSRNOG00000057710 ENSRNOT00000086440 2 1 1 80 4 159685695 159685713 GACGAGGAAGTGAATGCAC 59 159675573 159685651 GAGACAATCCACATCGGTG 58 NA Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 3 2 2 62 1 79899813 79899832 ACAACGGTATGTGTTGTCAG 59 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392,ENSRNOT00000075504,ENSRNOT00000086915 2 3 3 77 12 22476004 22476022 AGGCCCTCATCAATACTGG 59 22475581 22475599 GAAAGTAGGAGCCCTCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Bckdha ENSRNOG00000020607 ENSRNOT00000027995 3 1 1 80 1 82423770 82424347 TCACGAAAGAAGGTGATGGA 59 82423709 82423727 CACATCGGAGAAGAGGAGG 59 NA Rattus norvegicus 81 Vom1r89 ENSRNOG00000030085 ENSRNOT00000042169 3 1 1 60 4 97567224 97567242 CTTGTGCAGACATCAGAGG 58 97567182 97567200 GGATGCTCTCAAGTGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr83 ENSRNOG00000030318 ENSRNOT00000044945 2 1 1 85 8 13369946 13369965 CTTTGCCCAGTACTGTTCTC 59 13370013 13371995 AGGGATGCATGATGACCTG 60 NA Rattus norvegicus 81 Gpr83 ENSRNOG00000030318 ENSRNOT00000044945 3 1 1 100 8 13372105 13373388 CAAGTACAGTGAGGACATTGTG 59 13373449 13373467 GTAGGATGAAGGTGGCCAG 60 NA Rattus norvegicus 81 Mapkap1 ENSRNOG00000017583 ENSRNOT00000023889 3 1 1 80 3 13588097 13602254 TTGTTCGAATAAATGCTGCC 58 13602294 13602315 TGAGTAAGATCTCCTTCATGGT 59 NA Rattus norvegicus 81 Spata16 ENSRNOG00000024521 ENSRNOT00000035263 2 1 1 80 2 112572093 112572111 TGAGACACATGGAGATGGT 58 112572153 112594102 GGAAATTCCCATTTAGTTGCG 58 NA Rattus norvegicus 81 H2afj ENSRNOG00000045819 ENSRNOT00000073287 1 1 1 74 4 170149241 170149259 GAGGGACAACAAGAAGACG 58 170149297 170149315 TTGTTGAGCTCTTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Swap70 ENSRNOG00000009910 ENSRNOT00000013276 2 1 1 80 1 174897153 174905067 TATTGTGCCAGAAGAGATCG 58 174905110 174905128 TCAAATTGCTCTTGTTGCC 57 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000046006 ENSRNOT00000059593 2 1 1 81 12 22005807 22005828 CGTAGTCAATTCAGTTTCTACG 57 22001036 22005767 ACTCATAGAAGACTTCCACCT 58 NA Rattus norvegicus 81 Dclre1c ENSRNOG00000015980 ENSRNOT00000021506 2 1 1 80 17 78807485 78810799 CTGGAATGCAGTTTGAAGGT 59 78807424 78807443 GAACTTGTACTTTGGGCTGG 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000011998 2 1 10 94 15 32775339 32775946 CCCAAGAGTCATGATTCATGC 60 32776000 32776020 AATTGATGGCAACAGTCTTGG 60 NA Rattus norvegicus 81 Csgalnact2 ENSRNOG00000014713 ENSRNOT00000019778 1 1 1 80 4 150176308 150176328 TGATGAACAGGAAGATGAGGA 59 150173753 150176270 CGGTAATAGCCTTCTATGAAGTC 59 NA Rattus norvegicus 81 Olr1875 ENSRNOG00000021727 ENSRNOT00000033009 1 1 1 60 1 172877610 172877631 TGCATTATCCAATCCTGATGAC 59 172877571 172877590 ACACCAGAGGCTATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xpc ENSRNOG00000008274 ENSRNOT00000011490 1 1 1 80 4 123150624 123150642 TTCGCTTTACCAAAGTGCC 59 123150111 123150581 TGAAGGTTCCAATGAACCAC 58 NA Rattus norvegicus 81 Etfb ENSRNOG00000017851 ENSRNOT00000024083 3 1 1 91 1 98472985 98473949 TGCCCAACATCATGAAAGC 59 98472912 98472930 GATCACGGAGACCTTGGAG 60 NA Rattus norvegicus 81 Tesl ENSRNOG00000033628 ENSRNOT00000044165 3 1 1 94 X 121054604 121066747 TGATCTGAAAGCAGATGGAC 58 121054529 121054548 AAAGTGTAGCTCAAACCCTG 58 NA InUTR Rattus norvegicus 81 Foxs1 ENSRNOG00000008529 ENSRNOT00000011262 2 1 1 60 3 148407640 148407659 CATGGCTATCCAGAGTTCAC 58 148407599 148407617 GATGTAGCGGTAGATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfxn5 ENSRNOG00000037871 ENSRNOT00000057537 1 1 1 80 4 116995322 117008827 AGATGTCAGAGATTGAAACCTC 58 116995263 116995282 CCTTGTTGTACACCACTGTC 59 NA Rattus norvegicus 81 AABR07005667.1 ENSRNOG00000024217 ENSRNOT00000029967 2 1 1 80 1 193537822 193537856 TGGGCTACATTGAGGAAGAC 60 193537897 193537917 TGTCATTGAAAGGAATGCCAG 59 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000080132,ENSRNOT00000078692 1 2 4 80 1 102779530 102779550 TATCCTCTGCTCTTTGTTCCT 59 102777916 102779488 TCCCAAGTCCCTTGTATGG 59 NA Rattus norvegicus 81 Psen1 ENSRNOG00000009110 ENSRNOT00000012495 1 1 1 80 6 107181067 107181085 GCACCTTTGTCCTACTTCC 58 107181127 107195577 TTGATTGTCATTCTGGCTACG 59 NA Rattus norvegicus 81 Olr455 ENSRNOG00000009586 ENSRNOT00000012711 3 1 1 60 3 73124394 73124413 CCAAAGATCCTAGTGACCTG 57 73124353 73124372 CCAGACATCCAGCAAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam227b ENSRNOG00000037124 ENSRNOT00000055995 2 1 1 80 3 118406318 118406816 GAGAAGAATATAGAGGGTTGCAC 59 118406260 118406281 CTGTTTAGCATCCAAATGTCTG 58 NA Rattus norvegicus 81 Olr1507 ENSRNOG00000019898 ENSRNOT00000026924 3 1 1 60 10 60864662 60864682 CATCATTTGGCTACTCAGCTC 59 60864622 60864640 GTGACTACCGCATAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036649.2 ENSRNOG00000058250 ENSRNOT00000075791 2 1 1 105 12 52649788 52652110 AGTCCAGGATATCATTTGAGG 57 52649703 52649723 TTCTCCAACATCACATCTCTG 58 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000009491 1 1 2 96 6 44361502 44361520 GACATCAGCATCCTGTCCT 59 44360325 44361155 CCCAAATGCCATTTATTTAGCC 59 NA InUTR Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000088588 1 1 2 88 1 218098403 218098422 AGATGAAGGAGACCATTCCC 59 218097794 218098352 GTTCCATTTGCTGCACTCC 60 NA InUTR Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000088588 3 1 2 89 1 218098403 218098422 AGATGAAGGAGACCATTCCC 59 218097793 218098351 AGTTCCATTTGCTGCACTC 59 NA InUTR Rattus norvegicus 81 LOC502894 ENSRNOG00000051816 ENSRNOT00000091662 3 1 1 88 4 159638151 159639583 TTCGGGAAAGGATGTACGG 60 159638081 159638099 CATGGGACACTCTTCTCCA 59 NA InUTR Rattus norvegicus 81 LOC102552796 ENSRNOG00000027296 ENSRNOT00000027019 1 1 1 60 18 30858347 30858365 TTCCTCTCCATCAACTCCA 58 30858386 30858407 GCTCATAGTCAAAGGAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paics ENSRNOG00000002101 ENSRNOT00000063942 2 1 1 80 14 33569325 33569343 AGTAACTCCGGAAGGACTC 58 33567499 33569283 TTTGACTTGAGAAGCAACTCC 59 NA Rattus norvegicus 81 Olr445 ENSRNOG00000049448 ENSRNOT00000072510 2 1 1 60 3 72997813 72997833 AAAGAATGAGACCACAGTGAG 58 72997853 72997873 CTGATGGAGATGATTCGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam72a ENSRNOG00000042747 ENSRNOT00000068223 1 1 1 80 13 48293460 48293480 GGACACTTCTGGATGTTTCAC 59 48293518 48298529 CCAAAGTAGGAAGTTTACACCAG 59 NA Rattus norvegicus 81 Nr3c1 ENSRNOG00000048800 ENSRNOT00000019409 2 1 1 60 18 32670052 32670071 GGCAGTGTGAAATTGTATCC 57 32670011 32670031 ACTCCAAATCCTTCAAGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360432 ENSRNOG00000046176 ENSRNOT00000073201 1 1 1 60 3 152226201 152226221 CCACATTTCCTATCTCTTGCC 59 152226241 152226261 TCAAGGTGGTTGATGTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362684 ENSRNOG00000030596 ENSRNOT00000040481 3 1 1 60 5 161889575 161889594 TCGTTTCCAGATGAGAATCC 57 161889615 161889635 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564306 ENSRNOG00000029793 ENSRNOT00000049144 1 1 1 60 3 38367565 38367586 CTTGTGACCCGTAAAGATATCC 59 38367605 38367625 CTGGATCTTTCAGGTCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 1 2 2 80 7 53642213 53645189 TTCTGTGCATGGTTTGCAG 59 53645230 53645251 AGCATGATTTGCAGTAGATCTC 59 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000068237 3 1 2 98 10 87564191 87564251 AGACTACCTGCTCTTGCAG 59 87564111 87564129 TAGAAATGCAACAGCTGGG 58 NA Rattus norvegicus 81 rno-mir-29b-2 ENSRNOG00000049256 ENSRNOT00000071880 2 1 1 65 1 38238382 38238400 GAAGCTGGTTTCACATGGT 58 38238428 38238447 CACTGATTTCAAATGGTGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb3 ENSRNOG00000020095 ENSRNOT00000027216 2 1 1 60 18 30382468 30382489 GAAATGCGTAGTCATAGTTCAG 57 30382510 30382528 CAATGTCAGTTCTGGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361537 ENSRNOG00000026900 ENSRNOT00000034506 3 1 1 80 11 88166273 88166605 AGGAACTTTGTGATCCAGGG 60 88167124 88167142 GTCTTTGAAAGGCTTGCCC 60 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 1 2 2 80 12 22209636 22209973 CTCAAGAACGGCATGATTGAG 60 22209576 22209595 TTCGGACTTGACATGTTTGC 60 NA Rattus norvegicus 81 H1fx ENSRNOG00000027722 ENSRNOT00000033687 1 1 1 71 4 119889832 119889850 AAGAGAAGGAAGAACCGCA 59 119889779 119889797 CTTACGGATCGTCTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll3 ENSRNOG00000009032 ENSRNOT00000012015 3 1 1 80 4 145360883 145364340 GCTCATCTATAAGCAGCCTG 58 145364383 145364401 TTCTTGATGGTAGAGCCCT 58 NA Rattus norvegicus 81 Chst4 ENSRNOG00000016953 ENSRNOT00000022749 2 1 1 100 19 41631798 41638249 CAGAATATCGGGATGATGCTG 59 41638311 41638329 CTATGACCGGACATGTGGA 59 NA InUTR Rattus norvegicus 81 Aimp2 ENSRNOG00000001044 ENSRNOT00000001379 2 1 1 87 12 12744533 12746415 GTGCTTGGAAAGGATTATGGG 59 12746464 12746482 TATGTAGCACAAGCAGGGA 58 NA Rattus norvegicus 81 LOC102551435 ENSRNOG00000029529 ENSRNOT00000002334 2 1 1 88 11 83979254 83985183 GTATCCTCGTGCTAGGCTG 60 83979184 83979204 AGAGTAATCCACACTGGTCAC 60 NA Rattus norvegicus 81 AABR07053580.1 ENSRNOG00000051627 ENSRNOT00000080247 2 1 1 80 3 114688364 114688384 ATCCAGATCTGAATCTAGGGC 59 114688301 114688325 CTATGAGAGTGAGATGATCGTG 58 NA Rattus norvegicus 81 Col16a1 ENSRNOG00000031475 ENSRNOT00000067663 2 1 1 80 5 148288454 148290439 CAGCATCTCCTCAAGAGCA 60 148290482 148290501 TTCTCCTTTCACCAGAAGGG 59 NA Rattus norvegicus 81 Cptp ENSRNOG00000022455 ENSRNOT00000039117 2 1 1 80 5 173315782 173316012 CTTGTCAGGTTTCTGAACAGC 60 173315722 173315745 CTCCATAATCTGAAGCTTTGAGAC 60 NA Rattus norvegicus 81 AABR07069386.1 ENSRNOG00000046689 ENSRNOT00000075473 2 1 1 80 8 20565882 20565903 CCATTCTCTGGACTGTTCCT 59 20565946 20565964 ATTAGAGCTGACAGCCAGG 59 NA Rattus norvegicus 81 Ncl ENSRNOG00000018273 ENSRNOT00000024712 3 1 1 80 9 93371739 93371760 TGTTTCACTCTACTACACTGGA 59 93371221 93371700 TTTGATTCACCACTCCAAGTG 59 NA Rattus norvegicus 81 Polr2b ENSRNOG00000024779 ENSRNOT00000039252 1 1 1 80 14 33075335 33075903 GAAATGAGGTGCTCTACAATGG 60 33075276 33075294 AACGCTGGTAGTAAGTGGG 59 NA Rattus norvegicus 81 Ncor1 ENSRNOG00000055246 ENSRNOT00000081409 1 1 1 80 10 48753150 48753170 CACAGAGCAAAGTCGTTATCC 59 48749869 48753108 GGAACTGCAAATTCCTGCT 59 NA Rattus norvegicus 81 Ncor1 ENSRNOG00000055246 ENSRNOT00000081409 2 1 1 80 10 48710845 48714187 AAGAAAGATTTCAGCGAGTTGG 60 48710786 48710806 TTTCGGAAATCTCATGCTCAC 59 NA Rattus norvegicus 81 Stfa2l2 ENSRNOG00000033929 ENSRNOT00000045639 3 1 1 91 11 67396004 67398083 ACTTCATTAAGATGGATGTGGG 58 67395934 67395955 ACCACTAAGTTCCAAATCATCC 59 NA Rattus norvegicus 81 Hyal5 ENSRNOG00000039466 ENSRNOT00000060478 1 1 1 86 4 52247278 52247297 ACCCTCATAATCCACTTCCT 58 52247346 52248153 CAAGGTCATCCTGTTCCAG 58 NA Rattus norvegicus 81 RGD1559909 ENSRNOG00000042421 ENSRNOT00000065105 3 1 1 62 5 142844428 142844447 CATCTGTATCCACCAGAGGT 59 142844385 142844403 ATCAAGACTCTGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000080190 2 1 8 134 3 100787162 100787183 CTGCCTTGATGTTTACTTTGAC 58 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732,ENSRNOT00000091338 1 3 3 80 6 129622935 129627834 GTGAAAGCAAGAATCTTCCAC 58 129627875 129627894 CTCCTAGTCTGTAGGATCCA 57 NA Rattus norvegicus 81 Mif4gd ENSRNOG00000003837 ENSRNOT00000005198 3 1 1 83 10 104160866 104163115 ACTCAAAGATCCAGGTGCT 59 104160801 104160819 TTGCTGAATACGCAGTCCT 59 NA Rattus norvegicus 81 Actr6 ENSRNOG00000007875 ENSRNOT00000010414 3 1 1 80 7 30397847 30397865 TGACGACCTTAGTTCTGGA 58 30394041 30397805 AATTGGGAATAACCGAGACAC 58 NA Rattus norvegicus 81 Cidea ENSRNOG00000018505 ENSRNOT00000024968 2 1 1 80 18 63099467 63099488 GTTCTTTCAGACCCTAAGAGAC 58 63099529 63106745 ACATACTTATTGCCCGGTG 58 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000066292 2 1 2 75 1 89785903 89785921 TGACAGACGAAGACAAGCA 59 89786710 89786728 CGTACCCATCAACACAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rnf166 ENSRNOG00000013777 ENSRNOT00000018591 3 1 1 86 19 55294667 55294686 AAGAAAGTGGACAAAGCCAC 59 55293084 55294619 CAGTGTCACCTTCTTGTTGC 60 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 3 2 2 80 3 161413486 161413504 CGACTTATGTGGTCTTCCC 58 161413548 161414007 AGCGGTACAGGTAATCCTC 59 NA Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 1 2 2 80 13 84789727 84789748 TAGTCTTTGATGGGATTCTGGT 59 84787908 84789687 TCTCAATACCTGGGAAGGAC 59 NA Rattus norvegicus 81 Cbx4 ENSRNOG00000046207 ENSRNOT00000075440 3 1 1 85 10 108196154 108196172 ATCGAGAAGAAGCGGATCC 59 108194631 108195961 GGTTCCCACGTGTTATATTTGG 60 NA Rattus norvegicus 81 Eef2 ENSRNOG00000020266 ENSRNOT00000047450 2 1 1 80 7 11403665 11403770 CGCCATGGGTATTAAGAGC 59 11403603 11403621 CCTTTGTCAGATGTTGGCA 58 NA Rattus norvegicus 81 Ppp1r16a ENSRNOG00000015450 ENSRNOT00000020768 1 1 1 80 7 117754302 117755153 CTTATTTCACGTGGTGCAG 57 117755197 117755215 TGTCTGTTCATCCTCACAC 57 NA Rattus norvegicus 81 Chmp6 ENSRNOG00000004014 ENSRNOT00000005379 1 1 1 80 10 109075905 109075924 GATCGAGATGAAGGTGATGG 58 109075966 109076550 TCCTCTATGGACATCACCTG 58 NA Rattus norvegicus 81 Kcnn3 ENSRNOG00000020706 ENSRNOT00000028117 3 1 1 80 2 188931934 188966567 TGTGAAAGGTACCATGACCA 59 188966610 188966628 GGAAAGGAACGTGATGGAG 58 NA Rattus norvegicus 81 Tmprss11g ENSRNOG00000029964 ENSRNOT00000060109 1 1 1 80 14 23204025 23204047 TATGGTGGTGCTATATCATCAGG 60 23204087 23205800 TCCAGAATCACCCTCACAG 59 NA Rattus norvegicus 81 Sft2d1 ENSRNOG00000024140 ENSRNOT00000049831 2 1 1 80 1 53003986 53005078 ATTATGCTGTTGTGCCTGG 59 53002365 53002384 TATGCAGAAGAGTAAGGCCA 59 NA Rattus norvegicus 81 Xrn2 ENSRNOG00000011785 ENSRNOT00000016351 2 1 1 80 3 141244026 141244047 CTTTGTAATCAGTTTGGACACG 58 141244087 141245334 TGCAAGTTCATCATGCTTCC 59 NA Rattus norvegicus 81 Klhdc7a ENSRNOG00000018867 ENSRNOT00000025517 3 1 1 60 5 158438289 158438309 CTTCCCATACCTTCTCATCTG 58 158438249 158438268 GCCTTCTGTATCACGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pigo ENSRNOG00000009930 ENSRNOT00000013213 3 1 1 80 5 58467685 58467861 CTCTATCCTACCATGGACAGC 60 58467625 58467646 ATGCTTATGACCACAATGATCC 59 NA Rattus norvegicus 81 Epo ENSRNOG00000001412 ENSRNOT00000001914 3 1 1 80 12 22275559 22276051 AAATGTCACAATGGGCTGTG 60 22276093 22276112 GCGTAGAAGTTGACTTTGGT 59 NA Rattus norvegicus 81 AABR07067896.1 ENSRNOG00000046343 ENSRNOT00000072983 1 1 1 80 9 71845941 71848856 AGTGGGAGAAAGTGAGAGC 59 71845879 71845900 AGGATAAGATCAGTGCTTCTCG 60 NA Rattus norvegicus 81 Tbp ENSRNOG00000001489 ENSRNOT00000002038 1 1 1 80 1 57505576 57505594 AGCTGTGATGTGAAGTTCC 58 57505635 57506788 TAATTCTGGCTCATAGCTACTG 58 NA Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000084293 3 1 2 114 5 107825387 107825406 GTCCAAAGTTGCAGCTCTC 59 107825290 107825308 CAGAGTGTCTAGGAAGCCC 59 NA Rattus norvegicus 81 Cdkn2a ENSRNOG00000059837 ENSRNOT00000079251 2 1 2 133 5 107841069 107841087 TTTCTTGGTGCAGTTCCTG 58 107825415 107840972 CATCATCACCTGGTCCAGG 60 NA DesignRelaxed Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720,ENSRNOT00000084739 1 2 2 80 19 43347529 43347548 TGTAGCACGTTACCTGAAGG 60 43347589 43348065 GGGACATACACCATAGTGAGG 60 NA Rattus norvegicus 81 Cd2bp2 ENSRNOG00000017201 ENSRNOT00000023285 3 1 1 81 1 198637730 198637748 CTGGACATGTTTGCTGAGG 59 198637593 198637687 CAGCTGAATCTGCTTCTTCTC 59 NA Rattus norvegicus 81 Asz1 ENSRNOG00000060343 ENSRNOT00000091311 3 1 1 80 4 45371634 45372544 AAGACGAGCTTACAAAGAATGG 59 45371575 45371599 CTTCTACTTCTAGTTCCTTAAGAGC 59 NA Rattus norvegicus 81 Zfp868 ENSRNOG00000028919 ENSRNOT00000015635 1 1 1 80 16 21521738 21521759 CTTCTCAGAAGAGTCTCTATGG 57 21521798 21522082 GGTCTTCCCATTCATATCCTG 58 NA Rattus norvegicus 81 Gfy ENSRNOG00000047401 ENSRNOT00000073918 3 1 1 99 1 101174131 101174423 TGAAAGAGACCGGGATGAC 59 101174050 101174068 AAGATGCCAATCAGCATCC 58 NA Rattus norvegicus 81 Eif5a2 ENSRNOG00000011859 ENSRNOT00000015779 3 1 1 89 2 115338310 115338832 GTCATGCCAAGGTACACCT 60 115338883 115338903 GAACATCCATGTTGTGAGTGG 60 NA Rattus norvegicus 81 MGC94199 ENSRNOG00000026672 ENSRNOT00000037547 2 1 1 83 5 24159477 24159496 GTGACTTCCAGATAGTGAGC 58 24159541 24164043 ATTCTGGCATGTTGTTTCTG 57 NA Rattus norvegicus 81 Taf10 ENSRNOG00000019178 ENSRNOT00000025955 3 1 1 87 1 170585551 170585570 AGATATTGCCAATGATGCCC 59 170585318 170585501 GTACTTGCGATCCTTGCTC 59 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 2 2 2 80 2 195667316 195668200 GAATCATAGGGAGAGGCGG 59 195668243 195668262 CTGATTCCTTGTCGCAAGTG 60 NA Rattus norvegicus 81 Cops8 ENSRNOG00000019635 ENSRNOT00000026581 1 1 1 80 9 97780509 97781121 TTCCCTTATCAGAGCCTGC 59 97781165 97781183 AGAAAGCCACGTAATCGGT 59 NA Rattus norvegicus 81 Pbrm1 ENSRNOG00000028227 ENSRNOT00000016581 3 1 1 80 16 7107744 7109254 GTAAAGCTGAAGAAGTTGGAG 57 7109296 7109314 AAAGTCTCCACTGACACTG 57 NA Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 1 2 2 80 10 109107493 109122262 ATGTCTACAAGACCATCATGGA 59 109122300 109122321 GTGCTTTCTCATAGTTCTTCCC 59 NA Rattus norvegicus 81 LOC100364191 ENSRNOG00000030447 ENSRNOT00000041753 3 1 1 60 5 173149094 173149114 AAGTGTGGAGTTATAAGCCCT 59 173149136 173149154 TCTGCCACTTCTCTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam151b ENSRNOG00000024136 ENSRNOT00000031909 2 1 1 91 2 22038348 22039199 GAGAAAGTCAATGAAGGATACACC 60 22038280 22038298 CTGACAGGGAAGGTGACAG 60 NA Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763,ENSRNOT00000076921 2 2 2 75 13 82595876 82595894 AGCAGAAGTCTGCAGTACC 59 82593139 82593157 TGTACAGGCAACTGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515,ENSRNOT00000019577 1 2 2 80 19 42153380 42159877 TCATTTGTCAGGACCCTGAG 60 42153319 42153340 GATGTTCTTGAATCATGCATGG 59 NA Rattus norvegicus 81 Zdhhc8 ENSRNOG00000021891 ENSRNOT00000048063 3 1 1 81 11 86909718 86909736 GCAACATGCCACTTCTACC 59 86909781 86909889 AGTGGTGGTCAAAGTCCTC 59 NA Rattus norvegicus 81 Brk1 ENSRNOG00000010184 ENSRNOT00000013600 3 1 1 81 4 145559282 145559303 GGGAGTACATTGAGATCATCAC 59 145559342 145573282 CTTGAACGACAAGACATATCGA 59 NA Rattus norvegicus 81 Olr1294 ENSRNOG00000050283 ENSRNOT00000075732 3 1 1 60 15 35549113 35549132 TGATTGCATTGATTTGGCTC 58 35549151 35549173 CTGCTGAGGAAATAATACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0645.1 ENSRNOG00000029091 ENSRNOT00000050325 1 1 1 60 10 67250565 67250586 TTCTGATATTCAGGCGAAAGAG 58 67250607 67250625 ACCAAGGGTTGAGAATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec1 ENSRNOG00000021014 ENSRNOT00000028522 3 1 1 60 1 101664228 101664250 CAGAAATACCATCTCAACGACTG 60 101664190 101664208 CATAGTGTCCCGGAATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684539 ENSRNOG00000049125 ENSRNOT00000072178 3 1 1 60 3 73064798 73064817 GAGCTTTCTCTACATGTGGG 58 73064838 73064858 AGTAAAGCACCATAGAACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002120.1 ENSRNOG00000060288 ENSRNOT00000084168 1 1 1 60 1 66644861 66644880 CGGATGTTGTTTGACTACCT 58 66644820 66644841 GCATATCTAAGTACTCCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911101 ENSRNOG00000005555 ENSRNOT00000007338 1 1 1 60 7 60099693 60099711 TCAGAACCATCTGGCTCTC 59 60099735 60099753 ATGTGAAGCAACACTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga1 ENSRNOG00000039463 ENSRNOT00000060475 2 1 1 60 18 30809840 30809858 TGACCACAATGAGAATGCT 57 30809879 30809900 TACTCCCTGAATAGTGTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aass ENSRNOG00000039494 ENSRNOT00000060530 3 1 1 80 4 50188814 50188837 GTCTTTAATGAGCTACCTTGTGAG 60 50188635 50188775 CACTTTCCTGAGGTCTCCA 59 NA Rattus norvegicus 81 AABR07002623.1 ENSRNOG00000038251 ENSRNOT00000058230 2 1 1 80 1 77782841 77784013 GTTCTCTGACCTCCTATACCA 58 77784054 77784073 TGAAATGTTGTTCCAGCTCC 59 NA Rattus norvegicus 81 Mir6334 ENSRNOG00000049688 ENSRNOT00000071266 1 1 1 60 3 150911627 150911649 CTAAGCACTGTAATCACTAGTGC 59 150911589 150911607 TTCCCATCAGATCCCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl2 ENSRNOG00000029441 ENSRNOT00000047223 1 1 1 80 16 26843110 26843130 CTATAATGCTACTGCCAACGA 58 26843172 26843701 TTTAACACGCCAACACCTG 59 NA Rattus norvegicus 81 Nudt2 ENSRNOG00000013110 ENSRNOT00000017712 2 1 1 87 5 57845847 57857013 TGCTGCGGATAGATCATGG 60 57857062 57857082 CAATTGTTGTGTTGTCCACCT 60 NA InUTR Rattus norvegicus 81 Trim52 ENSRNOG00000024509 ENSRNOT00000020876 2 1 1 103 15 90364640 90364734 ATTTCCAGGCTCCAGTCAG 59 90365525 90365543 GAAGTGACTGCATAGGGCT 60 NA InUTR Rattus norvegicus 81 LOC100912070 ENSRNOG00000048407 ENSRNOT00000073438 3 1 1 97 1 91153935 91153953 GTCATCTCTGCAGAAGAGG 57 91154120 91154411 TGTAGTAGTTCTTGGCTGAC 57 NA Rattus norvegicus 81 Stath ENSRNOG00000054677 ENSRNOT00000085234 2 1 1 84 14 21958274 21959059 TGGTCTCCATGATTACTGCT 59 21957140 21957158 ACATATCGGCGATAACGTC 58 NA Rattus norvegicus 81 Cmtm3 ENSRNOG00000010691 ENSRNOT00000014234 1 1 1 255 19 838011 838032 AAATAGAGAAGACAGACTGGAC 57 834879 837530 AATGAATGAAAGGCCCGAC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Lrwd1 ENSRNOG00000001429 ENSRNOT00000001940 3 1 1 80 12 23586853 23586873 GATCTACGATGTTGAACACCT 58 23586914 23587027 CACTTCAGGATCTGTGTTGG 59 NA Rattus norvegicus 81 Ngdn ENSRNOG00000018069 ENSRNOT00000024337 2 1 1 81 15 33682227 33682245 TCCTTTGGACCAGAAGCTG 60 33682290 33682385 CGGGTCATTCTCACTGAGG 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337,ENSRNOT00000019748 3 2 3 80 2 144904636 144904656 CATGATGCTGTTGGTTAACGT 60 144904698 144917369 AGGCCATCATCGTTAACCC 60 NA Rattus norvegicus 81 Abr ENSRNOG00000056837 ENSRNOT00000080703 3 1 1 80 10 64602779 64603783 CAGCAATAAAGATGACGATGAG 58 64602720 64602738 TGTTTAAAGCCCTTGGCAG 59 NA Rattus norvegicus 81 Pmaip1 ENSRNOG00000018770 ENSRNOT00000025362 2 1 1 134 18 62176729 62176748 TAAAGTGTACTGCACGTGGA 59 62176845 62178749 CACTCGTCCTTCAGGTCTG 60 NA Rattus norvegicus 81 Pglyrp3 ENSRNOG00000046881 ENSRNOT00000016364 1 1 1 80 2 192260365 192262618 TGTGACATTGCATATCACTTCC 59 192262657 192262677 GTGAGAGCCTTCAATAGTCCA 60 NA Rattus norvegicus 81 Pglyrp3 ENSRNOG00000046881 ENSRNOT00000016364 3 1 1 80 2 192260366 192262618 GTGACATTGCATATCACTTCC 58 192262659 192262678 TGTGAGAGCCTTCAATAGTC 57 NA Rattus norvegicus 81 Rn60_13_0880.3 ENSRNOG00000051312 ENSRNOT00000075853 3 1 1 60 13 83037141 83037159 GGGAAGACAAGGTGTTCTG 58 83037099 83037119 TCTGTCAGTGTAATTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365061 ENSRNOG00000048578 ENSRNOT00000060322 1 1 1 78 15 32386839 32386857 GTTCCTGTTCTTCTGGCTG 59 32387058 32387076 GACACTCAGGTGAGATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tnfsf18 ENSRNOG00000026607 ENSRNOT00000039221 1 1 1 82 13 79378914 79384131 CTTCACTCAAGCCAACTGC 60 79386663 79386681 TTCAGGAGCTGTCATTTGC 59 NA Rattus norvegicus 81 RGD1560831 ENSRNOG00000007605 ENSRNOT00000009988 2 1 1 60 3 52998051 52998069 AAGCGGTAAGATTGGTCCC 60 52998009 52998029 TTTAGGTTCCACAATGCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911127 ENSRNOG00000055735 ENSRNOT00000091636 1 1 1 60 15 36157801 36157821 CTATGTTGCCATCTGTAACCC 59 36157761 36157779 ACAGTGCTTCTCATCGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfpq ENSRNOG00000058461 ENSRNOT00000084202 1 1 1 80 5 145085573 145085675 AATGAACATGGGAGATCCCT 59 145085717 145085736 GCTTCATAACCTATGCCACC 59 NA Rattus norvegicus 81 Olr1293 ENSRNOG00000047227 ENSRNOT00000075675 2 1 1 60 15 36302840 36302859 CCTCTTCTTCCTCTTCACAG 57 36302799 36302817 AATTATGCCCAGGTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pygo1 ENSRNOG00000051813 ENSRNOT00000087114 1 1 1 89 8 79622284 79622302 GACTGGATGGGTTAGGAGG 59 79622355 79624085 GAGGAAAGGAAGCTCCCTG 60 NA Rattus norvegicus 81 Rn60_10_0631.1 ENSRNOG00000043259 ENSRNOT00000065209 1 1 1 60 10 63320442 63320462 AACCAAGTGGAGATCAAACTG 59 63320483 63320502 AGGTGATGGAGAACTTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd7 ENSRNOG00000014097 ENSRNOT00000019104 1 1 1 80 19 39643402 39643420 CCAAACTGCACAAGAACGA 59 39642617 39643361 CATCAATAATGACCAGTACCGA 58 NA Rattus norvegicus 81 Olr840 ENSRNOG00000030761 ENSRNOT00000052426 3 1 1 60 5 59327327 59327345 CAACCACTTCACCTGTGAG 58 59327369 59327387 GATGGAGATGTCAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pzp ENSRNOG00000006709 ENSRNOT00000009467 2 1 1 80 4 161808296 161808701 TCAACGTAAGCTACATTGGA 57 161808235 161808253 CAGGTATGAAGCCTGACAC 58 NA Rattus norvegicus 81 Klhdc8b ENSRNOG00000047867 ENSRNOT00000071381 1 1 1 81 8 117233642 117233985 AGATCTACGTCCTGGGAGG 60 117233579 117233597 GTCCATGTACGTGTCTCCA 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 1 2 2 83 2 208398701 208398719 TCCTCATCAAGAGCTGCAG 60 208398123 208398406 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 1 2 2 80 2 197988353 197989385 CATCAGATAAGCAAGCACTTCC 60 197988294 197988313 GCCCATCTTCCCTATGAGAG 60 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 2 2 2 80 2 197988353 197989384 ATCAGATAAGCAAGCACTTCC 59 197988293 197988311 GGCCCATCTTCCCTATGAG 59 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274,ENSRNOT00000083830 3 2 2 85 7 125952981 125955357 CAGAAGTAATGGAAGTCCTGC 59 125955404 125955422 TATCTGGTCACGCAGTGTC 60 NA Rattus norvegicus 81 Olr16 ENSRNOG00000031741 ENSRNOT00000052199 3 1 1 60 1 149859364 149859385 TGTACCTAGCAGTCATAATGAG 57 149859325 149859346 TTCAGATCCAGAGTGATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1642 ENSRNOG00000047738 ENSRNOT00000060437 3 1 1 60 15 28852920 28852938 CTTCCTGCTGATTCTGCTC 58 28852878 28852897 AGTGCGTATCTTCAGGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565767 ENSRNOG00000023181 ENSRNOT00000032528 1 1 1 60 3 57191816 57191835 CCTTCAATCTGTTGTCGAGG 59 57191775 57191794 ATTCAGGACTCTCCAAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra4 ENSRNOG00000002336 ENSRNOT00000003191 3 1 1 80 14 39169682 39172223 TTTGGGAGTTATGCATATCCC 58 39172265 39172283 CTTTGGTACCTCCACTGAC 58 NA Rattus norvegicus 81 Ccl26 ENSRNOG00000001444 ENSRNOT00000001963 1 1 1 80 12 24159091 24161618 AATGAGGGCGTCATATTCAC 58 24161661 24161679 AATGTATCTCTGCACCCAC 57 NA Rattus norvegicus 81 Nek11 ENSRNOG00000042432 ENSRNOT00000046816 2 1 1 80 8 113866133 113866155 CTGACAATCAGATAGTGGAATGG 59 113854257 113866096 CTCGATGAAGTATCCTCCTCTC 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 3 2 2 80 2 196157729 196158561 TCAATTCCAAGGATAAGGCTC 58 196158601 196158621 CAGGAACATTAGTTGTGTCGA 58 NA Rattus norvegicus 81 Cenpa ENSRNOG00000032178 ENSRNOT00000012512 2 1 1 91 6 27075654 27075674 GAGATTCCTGTGGCTTAAGGA 60 27075188 27075601 TTTCTCTTACCACGAGGCC 59 NA Rattus norvegicus 81 Olr847 ENSRNOG00000046095 ENSRNOT00000075727 2 1 1 60 5 69178881 69178899 CGCCCATGTACTTCTTCCT 60 69178839 69178862 GAAGATGTTGTGTAGCAGATATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tubb3 ENSRNOG00000017209 ENSRNOT00000023452 3 1 1 87 19 56226776 56228387 TTTATCTTCGGTCAGAGTGGT 59 56228436 56228454 CATCCAGGACTGAGTCCAC 60 NA Rattus norvegicus 81 Zfp687 ENSRNOG00000021026 ENSRNOT00000028553 1 1 1 80 2 196174549 196174569 TTTAAGTGCCCATCTTGTCCT 60 196174336 196174512 TCCAGACTGATGAGTATTCTTGAG 60 NA Rattus norvegicus 81 Nrip3 ENSRNOG00000013290 ENSRNOT00000065288 2 1 1 80 1 174393290 174393308 TAGTAGGCCAGATTGAGCA 58 174389312 174393246 CATTGTCATCAACCACAGC 57 NA Rattus norvegicus 81 LOC100909998 ENSRNOG00000015188 ENSRNOT00000020367 1 1 1 60 3 120157647 120157666 CATGGATCTGAGGAGAAAGC 58 120157136 120157629 CAGAGTTAGTTTCCAAGTCTAGAG 59 NA DesignRelaxed Rattus norvegicus 81 Lipn ENSRNOG00000057173 ENSRNOT00000078405 2 1 1 81 1 252384744 252386835 CCATGATCAAGCTTATGTTTGG 58 252386875 252386895 TTGCAGACTGTGACATAAGAC 58 NA Rattus norvegicus 81 LOC103693822 ENSRNOG00000059282 ENSRNOT00000080898 2 1 1 60 15 27590436 27590454 CTCATTGGATTCCTTGGCT 58 27590394 27590412 CACAGAAGGGAAGTTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 3 2 2 81 7 125230554 125230573 CAAGAGCGCCATCAATTCTC 60 125230615 125232681 CTCCTCATTCTCCTCTAGCTG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763,ENSRNOT00000003021 1 2 3 82 14 34557028 34557980 GGAGAAATAAGAAAGGTGTGGTC 60 34556753 34556771 GCGCTCTTCACCATAAAGC 60 NA Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000056393 1 1 2 82 4 148048212 148048235 CAGCTCTTCTGTGATAGAAATAGC 60 148045493 148048171 ATAGTGAGACCCGTTCTGC 59 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000080604 1 1 2 60 14 72025102 72025121 TTTGTACACTGGGAATCCTG 58 72018123 72025079 ACAATCATCTTGGGCTCGT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495,ENSRNOT00000080604 2 2 2 97 14 72017925 72017943 GGGATGGTAGAGATGGCAG 59 72012500 72012518 TCCTTTCTCACCAGCAAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100360516 ENSRNOG00000050808 ENSRNOT00000073056 1 1 1 60 15 29728629 29728744 GGGATAAACTTTCTCCTGAGAG 58 29728590 29728609 CATGAGCATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Maob ENSRNOG00000029778 ENSRNOT00000044009 2 1 1 80 X 6518028 6518046 AAGCTCCAATTGCGTACAC 59 6518088 6519575 TGTGAGCAAGGATAAATCCCA 60 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214,ENSRNOT00000077362 2 2 2 80 2 189876931 189877057 CCTAGAACAGCAGGATATGGT 59 189877099 189877117 AGGATCTTCCGAAAGCCTC 59 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549,ENSRNOT00000080834 1 2 2 80 11 73144026 73144044 AGGCTGCAAACATTCTCAC 59 73144087 73148796 GAAGCACGTTAATCTGCAGG 60 NA Rattus norvegicus 81 Por ENSRNOG00000001442 ENSRNOT00000001961 1 1 1 81 12 24003308 24003326 TGCGCAGGACTTCTATGAC 60 24002832 24003265 GTTCCCAAGACCAAATACAGC 60 NA Rattus norvegicus 81 Lax1 ENSRNOG00000028250 ENSRNOT00000029533 1 1 1 141 13 50164806 50165666 AGGTCAAGCAACTTAGAAAGAG 58 50165768 50165786 TCTTGTGATCTCTGGAGGG 58 NA InUTR Rattus norvegicus 81 Icam5 ENSRNOG00000020694 ENSRNOT00000028096 2 1 1 102 8 22054574 22054671 GTCACGGTGGAATATGGTC 58 22054737 22054755 TCCCATCAACTTCACAGGA 58 NA Rattus norvegicus 81 Nisch ENSRNOG00000018823 ENSRNOT00000036910 3 1 1 80 16 7274573 7274592 CAATATTCGAGAGCAGCTCC 59 7273183 7274531 GCATCACAGTGACTCATCTC 59 NA Rattus norvegicus 81 Pnn ENSRNOG00000004061 ENSRNOT00000005439 1 1 1 80 6 80159484 80160145 AATGATGTGAGGCCCATCC 60 80160185 80160207 TAGCAATAAACTACCTCGTCCTC 60 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 2 2 3 80 19 10186440 10186459 ATCTACCTCCTGGACATCAC 58 10186496 10188532 CTCCTTCTTATCTGTAATGATGTCC 59 NA Rattus norvegicus 81 AABR07055446.1 ENSRNOG00000050691 ENSRNOT00000074535 3 1 1 191 7 3631079 3631097 AATCGTGTGGAAACAACCG 59 3631448 3631471 AGTATTAGATTCTTCTGGGACCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017772.1 ENSRNOG00000049108 ENSRNOT00000072686 2 1 1 93 15 30910074 30910187 CTTTCTCCTGAGAGTTGCC 58 30910243 30910262 CTTGCATTTCAACTGCAGAG 58 NA Rattus norvegicus 81 Msrb2 ENSRNOG00000016873 ENSRNOT00000022661 2 1 1 86 17 86073297 86078635 GAACTGAAGCGCCTTTCAG 60 86078684 86078703 TGAAGAGTGGGCTATCACAG 59 NA Rattus norvegicus 81 LOC100271845 ENSRNOG00000042706 ENSRNOT00000066652 2 1 1 60 1 196738069 196738087 CTATGAAGCCGATGAGGAG 57 196738111 196738129 CCTCACTGTTTGCTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpf ENSRNOG00000003388 ENSRNOT00000004525 3 1 1 80 13 108160973 108160993 AGACTTACCCAGGAGTTACAG 59 108158625 108160933 CTTCACTGATGTGACCTTCTC 59 NA Rattus norvegicus 81 Psg29 ENSRNOG00000029485 ENSRNOT00000043333 3 1 1 81 1 79237299 79238272 TTATGTAACCAAGCCTGTGAC 58 79237238 79237256 CGTGAAGGTCACAGATCTG 58 NA Rattus norvegicus 81 Hist1h1b ENSRNOG00000060355 ENSRNOT00000091688 2 1 1 60 17 44766899 44766918 CGTCCAAGCCTAAAGTTACC 59 44766941 44766959 TTCTTTACCTTGGCAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ep300 ENSRNOG00000000190 ENSRNOT00000000206 3 1 1 80 7 122849479 122852259 CCATGAACAACATGAGTGC 57 122852301 122852321 TGGAGTCAGAAAGAAGATTCG 58 NA Rattus norvegicus 81 Apln ENSRNOG00000003984 ENSRNOT00000005331 3 1 1 115 X 134859924 134859942 CCCAGAACTTCGAGGACTG 60 134859213 134859849 CCTTCAATCCTGCTTTAGAAAGG 60 NA InUTR Rattus norvegicus 81 RT1-Ha ENSRNOG00000026669 ENSRNOT00000086964 1 1 1 174 20 3880737 3880847 TCACTGGGAAATGCAGGAG 60 3880984 3881003 CTCCACAGTTACTCACAGGG 60 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000029949 ENSRNOT00000044152 3 1 1 86 6 129056980 129057000 CATTAGGGAAGTCTTCTCCCA 59 129057048 129057968 GCCTTGTGGACTACCTGAG 60 NA Rattus norvegicus 81 Gcnt3 ENSRNOG00000059540 ENSRNOT00000079815 2 1 1 92 8 76450875 76452410 CAGCCAAGAAGGTATCAAAGAG 59 76450804 76450822 AACCTCCTCCATGAAACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000087669,ENSRNOT00000080820 1 3 4 80 1 63845175 63845417 ATTCATCTCAGGACCATCGAG 60 63845459 63845477 AGTGTGAGGCTCATTCCAG 59 NA Rattus norvegicus 81 LOC680875 ENSRNOG00000023828 ENSRNOT00000014191 1 1 1 80 7 117185516 117185689 AGGATCTGAAGCAGCTGAG 59 117185454 117185472 TAGAAGTCTCTGCCCACTG 58 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000024077,ENSRNOT00000085395 2 2 2 80 1 170262333 170262352 CCTTCTCAACAGCAGTAGTG 58 170262394 170269732 ATCTCCAATTCTCTGGTCCC 59 NA Rattus norvegicus 81 Apol9a ENSRNOG00000023410 ENSRNOT00000031951 3 1 1 61 7 118928781 118928800 TGTATCAAAGGCCAAGTTGC 59 118928276 118928294 GATCCCTCAGTGCTTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ufd1l ENSRNOG00000047394 ENSRNOT00000071493 2 1 1 80 11 86315562 86315580 AATGCACTGAGGAACTTCG 58 86312990 86315520 CCGCAGTTCATAGATCTTCTC 58 NA Rattus norvegicus 81 Arl6ip5 ENSRNOG00000006818 ENSRNOT00000010185 2 1 1 81 4 129574466 129574485 GTGTAGTGAGCAATCTGCTC 59 129574529 129593038 CTCAGAAACCCAACGACTG 59 NA Rattus norvegicus 81 Sco1 ENSRNOG00000028699 ENSRNOT00000044116 3 1 1 84 10 53602515 53602533 ATTGATGGAGTGGCCAGAG 60 53602575 53607627 TTGTATGATCCACTATGTAGTCCTC 60 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 1 2 2 80 9 81842000 81842018 CCCAGAGTTCCTTCAATCC 58 81842062 81842671 TTTGACCACTGATCACCTG 57 NA Rattus norvegicus 81 Slc16a8 ENSRNOG00000012090 ENSRNOT00000016247 2 1 1 138 7 120489132 120489290 CTTTGCAGGAAGCAGAAGC 60 120489012 120489030 GCCTTAGGGAAGCCATAGG 60 NA InUTR Rattus norvegicus 81 Thoc5 ENSRNOG00000008456 ENSRNOT00000011281 1 1 1 80 14 85142329 85142347 CCCAAAGTGATCCGAAGTG 59 85142389 85143917 ATAGTATCTGCCTTCCTGCTC 59 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 2 5 5 81 10 70163838 70163856 GAGAAGTGGGAGCTGATGG 60 70162263 70163795 CTTCATTACCAGACACCAGGT 60 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000003660,ENSRNOT00000046049 3 2 2 82 1 63558874 63558893 TGAGTTGAATCTGCAACAGG 59 63557447 63558832 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 Zc3h11a ENSRNOG00000053210 ENSRNOT00000090858 2 1 1 80 13 50230033 50230052 GAACTTGAGGACAATGGTGG 59 50230091 50231213 TATGGTCTCATCTGAAGTCTCAC 60 NA Rattus norvegicus 81 LOC100125367 ENSRNOG00000005558 ENSRNOT00000007341 2 1 1 111 13 111891039 111891502 AACGCATGGGATCTTTCTC 58 111891576 111891595 GTGTTGACATGAGATCTGGA 57 NA InUTR Rattus norvegicus 81 Vom2r25 ENSRNOG00000047696 ENSRNOT00000075203 2 1 1 80 1 116872215 116872585 CAGTCATGATTTAGAGCTTCAC 57 116872625 116872644 TCATCCAGAACCACATTGTC 58 NA Rattus norvegicus 81 Ddah1 ENSRNOG00000014613 ENSRNOT00000045016 2 1 1 81 2 251724257 251729899 GTCCTATTCACAGGCAGAG 57 251729942 251729962 AAGTATCAGCCAAGATCTCAG 57 NA Rattus norvegicus 81 Sipa1 ENSRNOG00000020726 ENSRNOT00000028137 2 1 1 80 1 221011502 221014185 AGCAAGTGCTGAGTTTCCA 60 221011440 221011462 TGTTGTACATCTCTTCCTCAGAG 60 NA Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485 2 1 2 95 20 3891808 3891998 TACCCGCAGGTAACTTCTG 59 3892057 3892075 CACACTGTAATAGGCTGCC 58 NA Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485,ENSRNOT00000088132 3 2 2 60 20 3891240 3891258 TCTTGGCCCTAGTAAAGCC 59 3891281 3891300 GGAATCAGAACCTGAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gjb3 ENSRNOG00000014372 ENSRNOT00000019266 2 1 1 60 5 145391488 145391507 TCTGCTACCTCATCTTCCAC 59 145391447 145391465 CTCTTCGTCGATTTGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 3 2 2 80 1 142155170 142155188 GACAGTCGAGTAAGTCACG 58 142154984 142155126 AAAGACCACCACAAACCTG 58 NA Rattus norvegicus 81 Flywch2 ENSRNOG00000004461 ENSRNOT00000005899 2 1 1 85 10 13112392 13114876 CGAACCTGGATACAGGTGG 60 13112325 13112343 CTTAGGGAGTGCAGTGGTC 60 NA Rattus norvegicus 81 Chst5 ENSRNOG00000021521 ENSRNOT00000026262 2 1 1 115 19 44135290 44135308 TGAGCTGCTCATTGTATGC 58 44116916 44116934 ACTACAGTGCTGGAGAAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atg4c ENSRNOG00000008767 ENSRNOT00000011631 3 1 1 80 5 117905838 117905859 TACATGGATCCTCATTACTGCC 60 117905898 117911708 AGATGGACAGTGGAATGTCTC 60 NA Rattus norvegicus 81 Nop2 ENSRNOG00000018453 ENSRNOT00000024938 3 1 1 80 4 157654905 157655068 AGACGAACAAGGATGAGAAGG 60 157655107 157655128 TGACTGAGTCTATAGCACTGAG 59 NA Rattus norvegicus 81 Parvg ENSRNOG00000052064 ENSRNOT00000085216 1 1 1 80 7 125290309 125290327 TTCCTCTACGACCTGTTGC 59 125290370 125291785 TCTCTTCTTTCCTCCTCGTG 59 NA Rattus norvegicus 81 AABR07050637.1 ENSRNOG00000048616 ENSRNOT00000075354 2 1 1 60 5 171825996 171826014 CACCTACGAGAAAGACCCA 59 171826036 171826056 ACCTTCTGTGTAATCATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 3 1 1 102 5 126087287 126092302 CTACAGGCCTCCTAAGGAG 58 126087203 126087221 ATCTTCTTCAGCTTGCACG 59 NA DesignNoJunction Rattus norvegicus 81 Yy1 ENSRNOG00000004339 ENSRNOT00000005743 2 1 1 84 6 132717671 132717690 CAAGAAACTCCCTCCTGGAG 60 132717737 132724267 TCTTGGCTTCATTCTGGCA 60 NA Rattus norvegicus 81 Gemin7l1 ENSRNOG00000034168 ENSRNOT00000040934 2 1 1 60 4 78954727 78954745 GAAGGTGTACACGTGACTG 58 78954685 78954706 CGTAGAAGTTAGCTACATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aven ENSRNOG00000006419 ENSRNOT00000065752 2 1 1 90 3 104113881 104113899 AGTGAGTCACTGGTTCGAG 59 104113953 104115686 CTAAAGGAACTGCGGTCTG 58 NA Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 2 1 1 69 7 144624136 144624879 GAATGAATTCGCACAGTGG 57 144624912 144624930 TACCGAGAGTAGATCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 3 1 1 69 7 144624137 144624880 AATGAATTCGCACAGTGGG 59 144624912 144624931 GTACCGAGAGTAGATCTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r73 ENSRNOG00000052492 ENSRNOT00000078886 2 1 1 60 4 87758736 87758756 TTTCTTGTAGGAGTCATGCTG 58 87758775 87758796 GATGTCTGCACAAGATAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059478.1 ENSRNOG00000047774 ENSRNOT00000075169 2 1 1 89 4 21051555 21051772 TGTATAATAAGGGCATGGCC 58 21051485 21051503 CATTACCACCACTGACCAG 58 NA Rattus norvegicus 81 Brms1 ENSRNOG00000020117 ENSRNOT00000027258 1 1 1 80 1 220330336 220330354 GGAGGCAGATGAGAGTGAG 59 220330398 220330521 TCCTCGTCATCCATCTCTG 58 NA Rattus norvegicus 81 Pnisr ENSRNOG00000008782 ENSRNOT00000061139 2 1 1 80 5 36003663 36004966 GAACCTCCACAGATTGATGC 59 36005009 36005027 TTCACGCTCCATCTTCTCC 60 NA Rattus norvegicus 81 Ermard ENSRNOG00000015230 ENSRNOT00000059845 1 1 1 80 1 56986182 56986202 AGTGTCCCTTTCTCCTAAGAG 59 56986243 56987919 TTAGTACGTCCATCACAGCA 59 NA Rattus norvegicus 81 Asb2 ENSRNOG00000051619 ENSRNOT00000085517 2 1 1 80 6 127212860 127215205 TCAAGGAGAAGGCAGAACC 59 127212798 127212816 TCCGGTATTTCCCTATGGC 59 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033,ENSRNOT00000005317,ENSRNOT00000081141 2 3 3 80 6 28530232 28530250 AATGAAGCAAGAGCTTGGG 58 28530291 28531225 TTAGAGCAGTCAATCTTGTTGG 59 NA Rattus norvegicus 81 Olr217 ENSRNOG00000050569 ENSRNOT00000041974 1 1 1 60 1 170915186 170915204 AACCCACTCATTTACAGCC 58 170915144 170915164 CCAGAACCCTTATTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps15 ENSRNOG00000024603 ENSRNOT00000029791 3 1 1 85 7 12282437 12282455 ATCATTCTGCCCGAGATGG 60 12282270 12282390 ATCATCTCGGGTTTGATCTCC 60 NA Rattus norvegicus 81 Gpr183 ENSRNOG00000025094 ENSRNOT00000034560 2 1 1 81 15 108366170 108376176 CTCTGATACTAACTCTGACCAC 58 108366110 108366128 TTATTGCCGTGAGAAGCTG 58 NA InUTR Rattus norvegicus 81 Mir103-2 ENSRNOG00000035496 ENSRNOT00000053619 3 1 1 60 3 123833685 123833703 AGCTTCTTTACAGTGCTGC 59 123833726 123833745 TTCATAGCCCTGTACAATGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrt2 ENSRNOG00000016301 ENSRNOT00000067372 2 1 1 188 1 243664363 243665790 CCACAGAGGACAAGAAGGG 60 243668044 243668062 TCATCCTGTCACTGACAGG 59 NA Rattus norvegicus 81 Arhgdia ENSRNOG00000036688 ENSRNOT00000054957 3 1 1 100 10 109755489 109755586 TCTTTCCGGGTGAACAGAG 59 109755321 109755339 CTCCCGACCATGTAGTCAG 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 2 3 3 80 3 21850539 21850561 GGTCTCAAGTATGAACTCATCTC 59 21844842 21850502 CTGTCCATCTACTTCTACCTCC 59 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 2 2 2 80 1 80096281 80097762 ATGATGACATCAAATGTCTGGC 60 80097803 80097821 CTTCCTTTGTGGTTCCTGC 59 NA Rattus norvegicus 81 Sppl2b ENSRNOG00000057881 ENSRNOT00000084144 2 1 1 80 7 11718844 11719640 ATGACCTCAACAAAGTGTCTC 58 11718784 11718802 CTACAGGAACATCGAGGTG 57 NA Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 1 2 2 80 5 120639706 120642143 ATGAGTAAAGTGAATGCTGTGC 60 120642184 120642202 TGACAGTGTCCAGGAAAGG 59 NA Rattus norvegicus 81 Olr1641 ENSRNOG00000047787 ENSRNOT00000060439 3 1 1 60 15 28835134 28835152 CTTCCTGCTGATTCTGCTC 58 28835092 28835111 AGTGCGTATCTTCAGGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastk ENSRNOG00000011667 ENSRNOT00000064893 1 1 1 80 4 7262783 7263239 CAACAGCAAGGTGGTACAG 59 7263283 7263301 CAGGGCATAAACTGTTGCT 59 NA Rattus norvegicus 81 AABR07006774.1 ENSRNOG00000050417 ENSRNOT00000075515 1 1 1 88 1 257727284 257727307 CAGAAGACATAACATCAGAGAAGC 60 257727354 257729177 AGCAAAGACCTGAGTCCAC 60 NA Rattus norvegicus 81 Rac2 ENSRNOG00000007350 ENSRNOT00000009994 1 1 1 80 7 119795092 119795112 CAAGACATGCCTTCTCATCAG 59 119789807 119795053 GCTGAGTAGTTGTCAAACACAG 60 NA Rattus norvegicus 81 4931400O07Rik ENSRNOG00000026227 ENSRNOT00000032522 3 1 1 93 X 145558938 145558956 CACGAATAAGGGAGGACGA 59 145559007 145559200 CACTTTCCAGACCTTCTTATTTCTC 60 NA Rattus norvegicus 81 Fam83f ENSRNOG00000018330 ENSRNOT00000024835 1 1 1 86 7 121908291 121909488 TCTTACAGCTTTACCTGGAGC 60 121909536 121909554 TATGTCAAAGGGCTCCACG 60 NA Rattus norvegicus 81 Otud1 ENSRNOG00000016950 ENSRNOT00000022734 2 1 1 60 17 86409342 86409361 CTTAGTTGGCTCAGCAATGG 59 86409384 86409402 CTGGGTTAGGGTAGGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vezt ENSRNOG00000006514 ENSRNOT00000030015 2 1 1 80 7 34919078 34922604 TACTCCACAAGCTGGACAC 59 34919016 34919034 CATCCTCTTGGAGCAGGAC 60 NA Rattus norvegicus 81 Ndrg3 ENSRNOG00000036813 ENSRNOT00000055232 3 1 1 80 3 153035667 153035947 GATTTGCACTCAATCATCCG 58 153035606 153035624 AGTCAATCCAGCCTTTAGC 58 NA Rattus norvegicus 81 AC108631.1 ENSRNOG00000021066 ENSRNOT00000028600 1 1 1 60 1 228504191 228504211 GGAAATGAAGTCAGCCATGAG 59 228504151 228504172 CTCTATCCTATGAGAAGGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx3y ENSRNOG00000002501 ENSRNOT00000003378 2 1 1 60 13 105409455 105409474 CCAGGAAATTCTCATACCGA 57 105409495 105409515 ATATCAGCTCCACCATAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btd ENSRNOG00000019656 ENSRNOT00000061063 2 1 1 134 16 7783725 7784376 CCAAAGCGATTTACGGTCTG 60 7784473 7784491 CACGTAGTACTCAGCCTCG 60 NA Rattus norvegicus 81 Ipo4 ENSRNOG00000019553 ENSRNOT00000026552 1 1 1 80 15 34310413 34310806 TCAGACAAAGACTGCTATACC 57 34310353 34310371 CAGCATTTCGAACAACCTG 58 NA Rattus norvegicus 81 Olr485 ENSRNOG00000009747 ENSRNOT00000012912 1 1 1 60 3 73542433 73542451 CCCTCCTCATTGTACTCGT 59 73542391 73542411 GAGTTCATCCTGAGAATTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3120 ENSRNOG00000035513 ENSRNOT00000053636 1 1 1 61 13 80130989 80131007 GTTGTCATGTGACTGCCTG 59 80130946 80130964 CTTGCTGTGCAGAACATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr841 ENSRNOG00000049788 ENSRNOT00000073545 1 1 1 60 5 64622197 64622215 TTGATTCTCACCTGCACAC 58 64622155 64622173 ATGTCCAGAAAGGAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P4htm ENSRNOG00000020249 ENSRNOT00000027466 3 1 1 80 8 117370777 117382047 CATTGCTCTTCGAAATCCCAG 60 117370717 117370736 GTAACCCTTTCATCTGTGCC 59 NA Rattus norvegicus 81 Fam188b ENSRNOG00000011530 ENSRNOT00000015469 3 1 1 80 4 85523382 85523921 ACGGCTGACTGTTGATACC 60 85523962 85523983 CTGATACAGAGCTCAAGAGGAG 60 NA Rattus norvegicus 81 Klrg1 ENSRNOG00000014918 ENSRNOT00000020094 3 1 1 80 4 155046866 155046887 CTCTAGTCTGAAGTTCTGTGCA 60 155042057 155046825 TCCTGGAACAGGTTCACTC 59 NA Rattus norvegicus 81 Mtmr14 ENSRNOG00000007881 ENSRNOT00000010723 2 1 1 80 4 145212037 145213277 TGGCATGAATGTAACCTCCT 59 145213315 145213338 GGATATGGAATAGAAAGGAGAGTG 58 NA Rattus norvegicus 81 Olr1615 ENSRNOG00000049936 ENSRNOT00000046583 1 1 1 60 15 27243590 27243610 TCTTCTCCTTGGGTTCTACAG 59 27243632 27243650 AGGTAACGATCAAATGCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054,ENSRNOT00000071503 3 2 2 81 1 100716903 100716921 AATATGGTGTTGGTGGGAG 57 100716966 100721219 ATGTATAAGCCGCGATCAG 58 NA Rattus norvegicus 81 Ercc2 ENSRNOG00000017753 ENSRNOT00000024246 3 1 1 80 1 80298818 80298836 GATCGCAGACCTGGTATCC 60 80298877 80298997 CAGACATTGTCGATATTGTGGG 60 NA Rattus norvegicus 81 Acadsb ENSRNOG00000020624 ENSRNOT00000027999 1 1 1 80 1 202017097 202019354 ATTATGCATCAGAGGTCGC 58 202019397 202019416 GGTAATCTTTGGTGTAGCCG 59 NA Rattus norvegicus 81 Mcpt1 ENSRNOG00000053494 ENSRNOT00000090206 1 1 1 80 15 34610175 34610606 AAGATCAGCATATAAGGGAGACTC 60 34610118 34610140 CCACGTCCATAAGATACAATACC 59 NA Rattus norvegicus 81 Pdpn ENSRNOG00000014961 ENSRNOT00000020316 1 1 1 80 5 161949290 161950700 AGATAAGAAAGATGGCTTGGC 59 161949230 161949248 CCTCCAATGAAGCCAATGG 59 NA Rattus norvegicus 81 Nr6a1 ENSRNOG00000013232 ENSRNOT00000018751 2 1 1 80 3 23046633 23046651 AGCAAGCAGATCTTTGGAG 58 23037282 23046592 ATCACTAAATCTGTGCAGTTCC 59 NA Rattus norvegicus 81 Nsun5 ENSRNOG00000001450 ENSRNOT00000001970 3 1 1 109 12 24346688 24346817 CAACTTCCAGAATCTGAAGCAG 60 24346600 24346618 TCTTCTCAGCACGAAGGAG 59 NA Rattus norvegicus 81 Gsc2 ENSRNOG00000000282 ENSRNOT00000041975 3 1 1 89 11 87221220 87221238 ACAGAACCAGTATCCCGAC 59 87221291 87222036 TTCTTGAACCAGACCTCCA 58 NA Rattus norvegicus 81 Lamb3 ENSRNOG00000006025 ENSRNOT00000008440 3 1 1 80 13 112062352 112064123 ATCCTGTCTATCAGGAGGAC 58 112064165 112064184 GTCTCCAGAGAAGGATTCCA 59 NA Rattus norvegicus 81 AABR07054265.1 ENSRNOG00000050729 ENSRNOT00000075429 3 1 1 80 3 145810756 145810776 TGGATCCTTCTCAGAAGAGTC 59 145810489 145810715 CCCAAACGTAGCCTATAGCA 60 NA Rattus norvegicus 81 Rabggtb ENSRNOG00000009992 ENSRNOT00000065997 3 1 1 80 2 260111395 260112362 CCGAGAAGTTACCAGATGTG 58 260111334 260111354 TGTCAATCCAATGAAGTCTCC 58 NA Rattus norvegicus 81 Ppm1m ENSRNOG00000046535 ENSRNOT00000074934 1 1 1 87 8 114889588 114889606 GATGTCCTGTCCAATGAGC 58 114889213 114889537 CCAACTCTGAGAACCTGTG 58 NA Rattus norvegicus 81 LOC102557244 ENSRNOG00000017519 ENSRNOT00000058040 1 1 1 80 1 79338674 79349940 TACCTCAACGTGTACTCACC 59 79349983 79350001 GGGTGGTACTGATTCAACG 58 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 1 3 3 80 4 156063902 156064911 GGAAGAACAGGACTTCATCAC 59 156064953 156064971 TGTCGATGACCTGAATCCC 59 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 3 3 3 80 4 156063904 156064913 AAGAACAGGACTTCATCACTG 58 156064954 156064973 ATTGTCGATGACCTGAATCC 58 NA Rattus norvegicus 81 St6galnac4 ENSRNOG00000048870 ENSRNOT00000072685 2 1 1 80 3 11614828 11614847 AGTGTACACCTTCACTGAGC 60 11614890 11616210 GATTGTCTCCGGTTCTTGC 59 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 3 3 3 81 20 3991813 3991961 GCAGGAAGTTACATTGCTACC 59 3992004 3992022 CACAACCAGACATGGTTCC 59 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417,ENSRNOT00000082891 2 2 2 80 18 11846782 11847859 TTCAACAGATCCAATCCGAC 58 11846721 11846740 CGGGTTCTTTATCAACTCCT 57 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 3 1 2 188 4 161727352 161728159 GGTTAGGAAAGAGGGTCCC 59 161728500 161728768 GGTCAATGCAGCACTTGAG 60 NA Rattus norvegicus 81 AABR07051532.1 ENSRNOG00000049009 ENSRNOT00000047784 3 1 1 60 3 16441001 16441019 CACACTTCTGCTATGGGTG 58 16440727 16440746 CAAGACAATGTCACCAGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rheb ENSRNOG00000050578 ENSRNOT00000071737 3 1 1 80 4 6856595 6856614 ATTCACCAAGCTGATCACAG 58 6856655 6866082 ATGGAATATTCATCCTGCCCT 59 NA Rattus norvegicus 81 Mir3556b ENSRNOG00000035509 ENSRNOT00000053632 1 1 1 61 13 113782640 113782661 CATAACCGATTTCAAATGGTGC 59 113782600 113782618 TGACCGATTTCTCCTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 1 2 2 80 8 117592552 117592570 AGCATGAAGTGTCATCAGC 58 117592611 117598494 CAGCAAGATGAATTTGTACTGG 58 NA Rattus norvegicus 81 Tube1 ENSRNOG00000000598 ENSRNOT00000047194 2 1 1 80 20 44233341 44233359 TCATTATCTCGTGTCGAGC 57 44233402 44235451 AACATCTGATCCAATCTCCG 58 NA Rattus norvegicus 81 Plxna1 ENSRNOG00000017003 ENSRNOT00000022951 3 1 1 80 4 121224859 121225115 TGGCTCACTATCAGGTGAC 59 121224797 121224817 AGGAGTTGGAGATGTTGTAGG 59 NA Rattus norvegicus 81 Thpo ENSRNOG00000046850 ENSRNOT00000072402 3 1 1 96 11 83870775 83872679 AAACCCAGACGGAACAGAG 60 83872739 83872757 GAGGGTTCCAACTGTCCTC 60 NA Rattus norvegicus 81 Psma8 ENSRNOG00000030363 ENSRNOT00000044541 3 1 1 102 18 6177592 6177947 TTGCTTGAAGTTGTGCAGTC 60 6181324 6181345 CCTCCAATTCAATTTCTTTGGC 59 NA Rattus norvegicus 81 AABR07058091.2 ENSRNOG00000061264 ENSRNOT00000074953 2 1 1 80 7 99758042 99758482 CCTAGTTCAATGGGAGGGC 60 99757980 99757999 ATCCGGTCTGTTTCCTTCAG 60 NA Rattus norvegicus 81 Agtr2 ENSRNOG00000050006 ENSRNOT00000074269 1 1 1 88 X 119390213 119391119 TCTGGAAGAAAGAGTGTAAGGA 59 119391168 119391186 GTGATGTTTCTGCTGGTGG 59 NA InUTR Rattus norvegicus 81 Nudt13 ENSRNOG00000048195 ENSRNOT00000070933 2 1 1 102 15 4443200 4443219 AAGATTCAGTGCTGGTTGGA 60 4441818 4443135 GATTTCGGCAAAGAGGCTC 59 NA Rattus norvegicus 81 Pld4 ENSRNOG00000028566 ENSRNOT00000029017 2 1 1 80 6 137330100 137330120 CACCATGTTCGCTTATCTGAG 59 137330159 137330267 ATGAAGACTTTCACATCCACTG 59 NA Rattus norvegicus 81 Gpr21 ENSRNOG00000042269 ENSRNOT00000063938 3 1 1 83 3 21764415 21764434 TTCAAATACTGCACTGCAGG 59 21764479 21765087 TCTGAACAGCATTCATTCCC 58 NA InUTR Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681,ENSRNOT00000087680 1 2 2 80 1 276296973 276301983 GAAGAGAAGGCTAAAGATCGG 58 276296913 276296936 CCATTTACTTCCCATATCGTAAGG 59 NA Rattus norvegicus 81 Siglec15 ENSRNOG00000033588 ENSRNOT00000045278 2 1 1 61 18 74409252 74417291 CTCCAGATGGGATCACCTG 59 74409209 74409228 TCTGTGTTGAGAGCATTTCC 58 NA DesignRelaxed Rattus norvegicus 81 Clcn6 ENSRNOG00000008345 ENSRNOT00000011287 1 1 1 80 5 164830717 164831365 TGTCTTGATAGAGCCGGTG 59 164830655 164830673 ATTCCTGGCACTTTCACAC 58 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000083769,ENSRNOT00000028814 1 2 2 80 2 198829561 198829581 GCAGTGATTTCCTGTCTAGTC 59 198829620 198829802 AATCTAAACCTTGGATGTCAGC 59 NA Rattus norvegicus 81 Glycam1 ENSRNOG00000036826 ENSRNOT00000055270 3 1 1 97 7 145174696 145174714 CTATTTGCCAGCCTTGCTG 60 145173178 145173902 GAAGCTGGAATGGCATCTG 59 NA Rattus norvegicus 81 LOC684762 ENSRNOG00000045646 ENSRNOT00000072119 3 1 1 84 17 43633907 43633925 ACTTCAAGACCGACCTTCG 60 43633973 43633991 TCAAACAGACCCACAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja5 ENSRNOG00000017484 ENSRNOT00000023488 3 1 1 99 2 199162790 199181922 GAAAGGAAGCAGAAGGCTC 59 199181985 199182003 TAGAGTGCTTGTGGACCTC 59 NA InUTR Rattus norvegicus 81 Svs4 ENSRNOG00000013796 ENSRNOT00000018456 1 1 1 60 3 160660792 160660810 TAGTGACAGGAGCCATTGG 59 160661294 160661312 ACAACTTCTTCCGACTGTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07032888.1 ENSRNOG00000046679 ENSRNOT00000072475 3 1 1 60 18 87415588 87415606 AATGTCACACTCAGTTGCC 58 87415627 87415648 TTTCCCATATGACTAGTTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H3f3b ENSRNOG00000006532 ENSRNOT00000050223 3 1 1 145 10 104575378 104575775 CTTCAGCTTTGGGTGAGAG 58 104575251 104575269 AGCGATGAGGTTTCTTCAC 58 NA InUTR Rattus norvegicus 81 Eftud1 ENSRNOG00000032723 ENSRNOT00000047408 1 1 1 80 1 144625484 144625506 GATAGTGGAACTGAAATTCACCC 60 144625543 144627070 CCTGTAAGTGCGTTAATCTGTC 60 NA Rattus norvegicus 81 Rps6kb1 ENSRNOG00000003919 ENSRNOT00000005226 1 1 1 83 10 73865209 73865227 CTCTGAGGATGAGCTGGAG 59 73855779 73857041 TCCATGCCAAGTTCATATGGT 60 NA Rattus norvegicus 81 Rps6kb1 ENSRNOG00000003919 ENSRNOT00000005226 2 1 1 83 10 73865209 73865227 CTCTGAGGATGAGCTGGAG 59 73855779 73857040 TCCATGCCAAGTTCATATGG 58 NA Rattus norvegicus 81 Rn60_X_0773.5 ENSRNOG00000032807 ENSRNOT00000047432 2 1 1 62 X 77299135 77299153 CATCATTGCTGCCAAGGAC 60 77299091 77299109 GTACTCCTGTCAACCTCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a2 ENSRNOG00000027359 ENSRNOT00000027128 1 1 1 60 18 30774710 30774732 GGCTTATCATATTCCCAGTAGAC 58 30774672 30774693 CCAAACATAGAAAGAACCTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 3 2 2 61 15 34342123 34342142 TGACTGGAAAGGAGATTGAG 57 34341772 34342099 CTCCTTGATTCGTTCCACC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0746.1 ENSRNOG00000051044 ENSRNOT00000075847 1 1 1 60 X 73790354 73790374 AGACATGTACAAGGGATACTG 57 73790395 73790414 ACTCATCAATCACAAGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466,ENSRNOT00000015420,ENSRNOT00000088049 2 3 3 98 5 127660361 127660379 TTCAAAGTGAAGGATGGCC 58 127651616 127660300 AGCCTTCTTATCTGAATCCG 57 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914,ENSRNOT00000010929 3 2 2 173 7 31784583 31784601 GTGAAGAGCCGAAAGAAGC 59 31784738 31792214 TTGAAATACAAGCCAGGCC 58 NA Rattus norvegicus 81 Creld2 ENSRNOG00000004659 ENSRNOT00000006357 3 1 1 80 7 129813122 129813642 GAATTCAGTGAGATCCGGC 58 129813686 129813704 CTCCAAGAGTTGGTTGCAC 59 NA Rattus norvegicus 81 Smarca4 ENSRNOG00000009271 ENSRNOT00000013165 2 1 1 80 8 22707700 22707719 ACATGTTCCAGCACATTGAG 59 22709486 22710485 GATATAGGTCCAATCCTTGCAC 59 NA Rattus norvegicus 81 Shoc2 ENSRNOG00000015339 ENSRNOT00000020580 1 1 1 80 1 274749562 274749580 GTCACCTTACCAACCTCAC 58 274749621 274750813 TTTCCAGTGTACCAATTTCCTC 59 NA Rattus norvegicus 81 Ttl ENSRNOG00000018205 ENSRNOT00000024694 2 1 1 80 3 121612715 121613481 GTTTGACATTCGAAGCTGGG 60 121613524 121613542 GAAGCAGTTCGAAGCACAC 60 NA Rattus norvegicus 81 LOC497899 ENSRNOG00000022555 ENSRNOT00000038838 1 1 1 171 10 36710610 36711486 TGGGTTATACAGAAGCAAACC 58 36709957 36709978 ATTTCCTGTTCAACTACTTCCC 58 NA InUTR Rattus norvegicus 81 Tprn ENSRNOG00000010896 ENSRNOT00000014489 1 1 1 80 3 2486815 2486836 AAATCCTTCACAGTTCTCTTGC 59 2486877 2486982 GTAGCTGGACAGACCTGAG 59 NA Rattus norvegicus 81 Fam159a ENSRNOG00000030641 ENSRNOT00000043054 1 1 1 82 5 127977554 127977573 TGCTACCTGTTCATCAGCTC 60 127968135 127977509 GACATCTCCTTGGAGCCTG 60 NA Rattus norvegicus 81 Olr802 ENSRNOG00000045828 ENSRNOT00000045027 2 1 1 60 4 71881538 71881556 GTCACCTACCTGCTGACTC 60 71881496 71881514 GGTCCAGTGCAATAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps34 ENSRNOG00000015479 ENSRNOT00000021075 1 1 1 124 10 14257552 14257655 TTTCAAAGGGAAGAGTGAGGA 59 14257741 14257759 ATCTGTCCTCTGCTTTCCC 59 NA Rattus norvegicus 81 Ccsap ENSRNOG00000017690 ENSRNOT00000023911 2 1 1 83 19 56620581 56620599 AGAGACAGATGGACATGGG 59 56617755 56620537 GAAGTGCTGACTCATGAATCTC 59 NA Rattus norvegicus 81 Olr1400 ENSRNOG00000045932 ENSRNOT00000046027 2 1 1 60 10 34631611 34631630 TGTTATACCACAAGCACCGT 60 34631652 34631671 TGGTCCTATCAAACCCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hs1bp3 ENSRNOG00000006062 ENSRNOT00000007991 1 1 1 80 6 33525579 33527741 TGCTAGAATTCTTAGGCACCA 59 33527783 33527801 TGGCTGTCTCATCCAAGAC 59 NA Rattus norvegicus 81 Hs1bp3 ENSRNOG00000006062 ENSRNOT00000007991 2 1 1 81 6 33525578 33527740 CTGCTAGAATTCTTAGGCACC 59 33527783 33527801 TGGCTGTCTCATCCAAGAC 59 NA Rattus norvegicus 81 Brix1 ENSRNOG00000018021 ENSRNOT00000024285 1 1 1 82 2 60452180 60452396 GTCTCCAAACATGCATCGG 59 60452116 60452137 TCTGAACATCTTTGACTTGCTG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000075042,ENSRNOT00000085966 2 2 2 80 4 123547448 123549769 GGGAATGACGATAGAATGTTGC 60 123547389 123547407 CTTGAAGAACTGGGAGGCT 59 NA Rattus norvegicus 81 Yeats4 ENSRNOG00000005689 ENSRNOT00000007580 3 1 1 80 7 60291344 60292556 CGTACAGAAACGAGGATATGTC 59 60291285 60291305 CTCTTAACGGATTGCCATAGC 59 NA Rattus norvegicus 81 LOC100360891 ENSRNOG00000048413 ENSRNOT00000042721 3 1 1 93 15 31243133 31243246 TTTCTCCTGAGAGTTGCCC 59 31243303 31243321 ACTTGCATTTCAGCTGCAG 60 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 3 2 2 80 4 57561510 57561533 CAAACATGAGGTTACAATCCTAGG 60 57560183 57561474 CCTTCATATGGTGTTCCTTGTG 59 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 1 2 2 80 13 67600982 67601632 CGATCCAAAGAGTTCAGCA 58 67600920 67600939 GTACAGTCTAGAGACAGCCA 58 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984,ENSRNOT00000059982 2 2 2 80 13 67602887 67602907 AGTGACACTTCACATTTGCTC 59 67600980 67601632 CTTGCTGAACTCTTTGGATCG 60 NA Rattus norvegicus 81 Rexo4 ENSRNOG00000027867 ENSRNOT00000042289 3 1 1 81 3 5503487 5503505 TCTGTTCCTTGAACATCCG 58 5502659 5503443 CCGTGCACTCTTTACTAGAC 58 NA Rattus norvegicus 81 Itsn2 ENSRNOG00000046741 ENSRNOT00000074150 3 1 1 80 6 30139613 30139633 TGGACAGGAAGTATTGGAGAG 59 30137014 30139574 ATTCCCAACATTCTCTTGATCC 59 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 1 2 2 83 6 137210176 137210194 AACTCAAAGTCCACGTGAG 58 137210241 137212039 TGGTTCTTTCGAAGACCTC 57 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382,ENSRNOT00000082316,ENSRNOT00000084218 2 3 3 85 X 10141559 10141577 CATGGTGTTGGGAGAAGAC 58 10141626 10144017 CTGGTTGTATGCGGAATGG 59 NA Rattus norvegicus 81 Smarcad1 ENSRNOG00000006391 ENSRNOT00000008585 1 1 1 80 4 95936296 95936314 ATCCTTTACTACACCGCCA 58 95936358 95937545 AATGCGTAGGTTCCTTCAG 58 NA Rattus norvegicus 81 Cbln2 ENSRNOG00000013654 ENSRNOT00000018682 3 1 1 83 18 83781113 83781235 ACAGACAAACTATCCAGGTCAG 60 83781279 83781297 CCCTGGTAACATCCTGGTC 60 NA Rattus norvegicus 81 Rnf222 ENSRNOG00000022964 ENSRNOT00000038454 1 1 1 121 10 55478304 55478322 TTAGGAAATGCCTCCACAG 57 55478406 55481659 CACTGAGATCCAAGTCTGAG 58 NA InUTR Rattus norvegicus 81 AABR07033582.1 ENSRNOG00000050693 ENSRNOT00000073385 2 1 1 60 11 29087822 29087841 CTATGGTTATGGATGCTGCC 59 29087864 29087882 GTAGAAGCCACAGGACCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam214b ENSRNOG00000009323 ENSRNOT00000012386 1 1 1 80 5 58478895 58478913 GAGTCGTGGACCTGAATCC 60 58478736 58478856 GGTTAAATAAGGTCACTTGGATGG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278,ENSRNOT00000031189 1 2 5 200 8 6152524 6161630 TTTGCCATGAACCAGAGGA 59 6150167 6152361 GATATTCCGTATTGCCTGCC 59 NA Rattus norvegicus 81 Bap1 ENSRNOG00000019097 ENSRNOT00000025853 1 1 1 80 16 7340676 7340695 AGGGTTAAGTATGAGGCCAG 59 7340738 7341010 TCTAATCAGCTGCTGCAGG 60 NA Rattus norvegicus 81 Coa7 ENSRNOG00000010636 ENSRNOT00000014401 1 1 1 64 5 127929339 127929357 GACAGCTGTTACAAGCTGG 59 127934017 127934035 TTTAGGTCCTGAGTGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC691354 ENSRNOG00000023452 ENSRNOT00000031978 2 1 1 80 5 165470954 165470972 CATCCTGCTCATGAGGGAG 60 165471011 165472253 CCTGTAATCTGCTTTCTCTTTCTG 60 NA Rattus norvegicus 81 Ddx58 ENSRNOG00000006384 ENSRNOT00000060765 2 1 1 80 5 56511089 56511107 AGCCTTCTTCCATGATGTC 57 56500741 56511046 TCTTCAAAGCCTTCAAACCT 58 NA Rattus norvegicus 81 Tsku ENSRNOG00000027784 ENSRNOT00000034843 2 1 1 76 1 163319705 163328460 CCTGTGTCACCATGTTGTG 59 163319647 163319665 GAAACATGGCCGAGTTGTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 1 2 2 80 8 116273329 116273350 TCGTAGTATGATTGACGGAGAC 60 116273387 116273516 TCATCTATGTACCTCTCATCCAG 59 NA Rattus norvegicus 81 Col23a1 ENSRNOG00000003349 ENSRNOT00000064078 2 1 1 88 10 37015003 37016616 TTAGATGCCCTGAAGGGTC 59 37017353 37017371 CCAGGCAATCCAAGTTCAC 59 NA Rattus norvegicus 81 Clca2 ENSRNOG00000013771 ENSRNOT00000018435 3 1 1 80 2 250963208 250966079 AGCTTACAGCTTGAAAGCAC 59 250963147 250963165 CACAGCCCTATCCACAGTC 60 NA Rattus norvegicus 81 Krtap13-2 ENSRNOG00000043083 ENSRNOT00000061620 3 1 1 60 11 28739554 28739574 TGGATCTAGAATCTGCTACCC 59 28739595 28739614 ACAATTCATGGATCCGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9a8 ENSRNOG00000008354 ENSRNOT00000012175 2 1 1 80 3 164192896 164195141 CTGGCAAATTGGAAGGAGG 59 164195183 164195203 CGACTCAAAGATGATAGGTGG 58 NA Rattus norvegicus 81 Hira ENSRNOG00000045770 ENSRNOT00000075164 3 1 1 80 11 86242388 86242407 GTTTGAAGGTATGGAGGACG 58 86237917 86242345 GTGTTGTTCCTCCACACTC 58 NA Rattus norvegicus 81 Pik3c3 ENSRNOG00000017840 ENSRNOT00000066816 1 1 1 80 18 22989432 22989450 CCTCTCATTACACCAACCC 58 22989494 22993537 ACATCAGCAAATCCTCGTC 58 NA Rattus norvegicus 81 Rn60_11_0375.6 ENSRNOG00000051288 ENSRNOT00000077019 2 1 1 60 11 33857976 33857994 GGTATGATCCAAGGCTCCC 60 33858017 33858036 ACTTCAGGTTCAGGTTGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nubp2 ENSRNOG00000015090 ENSRNOT00000020504 2 1 1 84 10 14247022 14247041 ATCTCCCTTATGTCTGTGGG 59 14246094 14246978 TTATCAGTGCATGTTTCTTGGG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 3 2 2 80 10 47985104 47985124 CGTGATATACACAGATGCCCT 60 47983787 47985065 ATCTGGTTGAAAGCTTTGACTG 60 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051115 ENSRNOT00000071422 1 1 1 60 8 40384641 40384661 TTCTTATGCCCTCATCCTCTC 59 40384683 40384701 TTTAGACCTGCCCTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 3 2 2 80 4 153877650 153877669 AGAGATCATTGGCTTAGGCA 59 153877709 153892738 TAGGGAATAAAGAAGGCACCTC 60 NA Rattus norvegicus 81 RGD1560608 ENSRNOG00000043137 ENSRNOT00000066715 1 1 1 158 6 135859590 135859608 CTCTATCGTGGTGGAACCC 60 135860710 135860728 TCATCTGCTTCCTTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909747 ENSRNOG00000048028 ENSRNOT00000071957 2 1 1 60 1 76651881 76651900 CACGAGGAAGACTTTGAGAG 58 76651840 76651860 TTTGATACCACTGGATAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam196b ENSRNOG00000032329 ENSRNOT00000050610 2 1 1 60 10 19368123 19368141 CTTCCTCCATTCCAAGGCA 60 19368164 19368183 TTACTGGCACCTATCTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 3 3 3 80 12 25319451 25319470 CCTCTCATCCAGAATGTCCA 59 25319512 25321076 GAAGGGATCCCACTTCTCTG 60 NA Rattus norvegicus 81 Snap29 ENSRNOG00000001867 ENSRNOT00000002550 2 1 1 80 11 87839398 87839418 AAATCCAAACCAGTAGAGCCT 60 87834889 87839359 TATGGCTTCTTTCAATCTGCTG 59 NA Rattus norvegicus 81 Zfp397 ENSRNOG00000048101 ENSRNOT00000071548 1 1 1 105 18 15858815 15858833 ATATGGGTTCAACAGCACG 58 15858902 15859124 GATTATCTGGGACCTGCTG 57 NA Rattus norvegicus 81 Olr1614 ENSRNOG00000008739 ENSRNOT00000011549 1 1 1 60 15 27207927 27207947 TCCTTCACTCAATGCCTACTC 60 27207969 27207987 GACATTCAGTTGTGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 2 3 4 80 17 4271373 4271865 ATATGAAGCACAGGATGGAC 58 4271908 4271926 AGTGGGACTTTCACAAAGC 58 NA Rattus norvegicus 81 Tbcc ENSRNOG00000048291 ENSRNOT00000073079 2 1 1 60 9 16405376 16405395 CGATTTCAATTGGCTAGCCC 60 16405335 16405355 CTCCTCAGGAAGAATACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l4 ENSRNOG00000010111 ENSRNOT00000013460 1 1 1 80 6 135877150 135877569 GACATTCAGCCACTATTCAAGG 60 135877610 135877628 CACCTTGTCCATGAGTGGA 59 NA Rattus norvegicus 81 Sel1l3 ENSRNOG00000004932 ENSRNOT00000006610 2 1 1 80 14 60163876 60163896 AGGTCTGGGACATAATATCCT 58 60163937 60166087 AGTTACGGAAGTCACATGTC 58 NA Rattus norvegicus 81 Sel1l3 ENSRNOG00000004932 ENSRNOT00000006610 3 1 1 80 14 60180144 60180163 AAGCATCCTACTACCTCACC 59 60180206 60181488 GACTGTATAGCATGCCCTG 58 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000049311,ENSRNOT00000084432 3 2 2 80 10 59882516 59882535 TTTACCTCATCGAGCATCCT 59 59876176 59882476 GACCAACTTCTATACCAACAGG 59 NA Rattus norvegicus 81 Llgl1 ENSRNOG00000003948 ENSRNOT00000005366 2 1 1 81 10 46944000 46945744 GGGCTGTCAAGATCTATGG 57 46945789 46945807 AAATGCATCTGGGTGACAG 58 NA Rattus norvegicus 81 Nadsyn1 ENSRNOG00000020736 ENSRNOT00000028175 3 1 1 80 1 216986204 216987890 TGACAACCAGGTTGTACAG 57 216986142 216986161 GATGGCTCTTTGAAATGCTC 58 NA Rattus norvegicus 81 Cldn9 ENSRNOG00000003654 ENSRNOT00000004848 1 1 1 99 10 13003523 13003541 CTCCTCTGCTGTACGTGTC 60 13003442 13003460 TATCAAGTCCCGAAGCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabp5 ENSRNOG00000014787 ENSRNOT00000020090 2 1 1 80 1 75698507 75701047 AAATCCGAATGAACCTTGGTG 59 75701087 75701107 CTGTTTCTGCAAGCAATTTGG 59 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000000058 2 1 2 82 13 91080502 91080743 GGTCATGAAGACATGTCTAAACAG 60 91080784 91080802 TTTGACTCTGCTTCCAGGG 60 NA Rattus norvegicus 81 Ifna4 ENSRNOG00000033823 ENSRNOT00000046207 3 1 1 60 5 106922807 106922827 AACCCTCCTAGACTCATTCTG 59 106922767 106922787 ACAGACTTTGAGGTCACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 2 2 2 80 12 30795657 30795675 AAGATGGGAGTTACCTGCA 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Rer1 ENSRNOG00000014270 ENSRNOT00000019620 1 1 1 80 5 172479512 172480997 AAGACTCAGATGATGGCCC 59 172479450 172479469 TGAATTCTGGAAGCCTTCGA 60 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 2 2 2 80 1 209792224 209792439 GAGGACTTGACATAATTAAGGAGC 59 209792477 209792496 TTTCCTCTAACTTGGGTGCT 59 NA Rattus norvegicus 81 Fam20a ENSRNOG00000003969 ENSRNOT00000005367 3 1 1 80 10 97964718 97965385 TTCCTGATTGGAAACATGGAC 59 97964658 97964679 GTCAAGATGAATAAGGTACCCA 58 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 1 2 2 80 15 33382929 33383507 TCCTTACAAGAACCTTCCTAGAG 59 33382871 33382891 TAGGCGATATTAGCAAAGACG 58 NA Rattus norvegicus 81 RGD1307315 ENSRNOG00000013690 ENSRNOT00000018568 3 1 1 80 6 137388355 137388373 ACGTTTGTTCTTTGGACCG 59 137388415 137389621 TCCTAGATTCGGAACACAGTC 59 NA Rattus norvegicus 81 Klhl24 ENSRNOG00000033372 ENSRNOT00000052120 2 1 1 80 11 84615911 84615933 TGGTAAATCTATCCTGGGTGG 59 84615851 84615869 ATACTTGTCGCAGGATCGT 59 NA Rattus norvegicus 81 Ctsg ENSRNOG00000020647 ENSRNOT00000059677 2 1 1 80 15 35111817 35111837 GTTTCCAATTCTACAACAGCC 58 35111357 35111775 CAGAATCACCCTTGAAGGC 59 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 2 2 2 80 10 49271861 49271880 CTCAGCTGATCCAGATGGAG 60 49271922 49273823 TTTGGTCAAACGTGTCAGAG 59 NA Rattus norvegicus 81 AABR07034721.1 ENSRNOG00000049950 ENSRNOT00000046865 2 1 1 100 11 85189737 85189755 TCAACTCCATAGTGCACAC 58 85189824 85189842 CAACTTCAACATGGCAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242,ENSRNOT00000037296 1 2 2 80 12 31352556 31353497 GCTAGAGATCACTGGGAGG 59 31353541 31353559 GAGATGAAGATGGACGGCT 59 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800,ENSRNOT00000081373 3 2 2 80 15 39645002 39645021 CTCTTGGTCAAACAAGTGGT 58 39645062 39648851 AGCAAATAACTCTCCATCAGC 59 NA Rattus norvegicus 81 Il22 ENSRNOG00000007365 ENSRNOT00000009776 3 1 1 94 7 61236682 61236816 GAGGAGTCAAAGCCAAGGA 59 61236873 61236892 CTGGAATCTGTCTGACTGGG 60 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850,ENSRNOT00000064836 2 2 2 80 1 8839729 8839748 CAGTGGGATACAGATCCCTC 59 8834859 8839687 CTTGTTACACCTGTGCTGTG 60 NA Rattus norvegicus 81 Hspa1a ENSRNOG00000045654 ENSRNOT00000049667 3 1 1 60 20 2701292 2701310 GAGAACCGGTCGTTCTACC 60 2701250 2701269 TCTCCTTCATCTTGGTCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam71f1 ENSRNOG00000006132 ENSRNOT00000041207 1 1 1 80 4 56603113 56603131 CCTACCATCCTCGTCACTC 59 56603172 56605727 ATTCTTCTGCACTAACTCAGAC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000067251,ENSRNOT00000068116,ENSRNOT00000002636,ENSRNOT00000036179 1 5 5 80 11 78263149 78264882 TTCAATGAGGGACAGATTGC 58 78263088 78263108 AGGATCTTCTACATACTGGGC 59 NA Rattus norvegicus 81 Msrb3 ENSRNOG00000042668 ENSRNOT00000064251 3 1 1 81 7 62929560 62929580 GAAGGAGAATACACCCATCAC 58 62899734 62929518 TCGTTTCTGACTTGAACAGC 59 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697,ENSRNOT00000057216 3 2 2 80 5 128885225 128888779 TATTACATCATGTTCGGCCCA 60 128888818 128888839 GTATTTCCCTCGGTGATAAAGG 59 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 2 2 2 81 1 199019942 199026207 CATCATTGGCAGAGGAGTG 58 199026250 199026270 CATGATCTTCACTGCAAACTC 58 NA Rattus norvegicus 81 Polr2e ENSRNOG00000013545 ENSRNOT00000018169 3 1 1 80 7 12534093 12535064 GTCTTCTTCCCAGAGGAGC 60 12535108 12535126 TGTGATGTTCTCCTCCTGC 59 NA Rattus norvegicus 81 Cebpg ENSRNOG00000021144 ENSRNOT00000028703 1 1 1 60 1 91290898 91290919 CATGGATCGAAATAGCGATGAG 60 91290859 91290879 TTTCACAGCCATATTGTTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cebpg ENSRNOG00000021144 ENSRNOT00000028703 3 1 1 60 1 91290691 91290709 CAACCTCGCAGACAATGTG 60 91290649 91290668 GTTATCAGAATTTGCCACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789,ENSRNOT00000082567 2 2 2 80 10 15196650 15196744 CAGACAACTCGAAGTTCAGAG 59 15196783 15196804 TACTCAAGCGAACAACATTGTC 60 NA Rattus norvegicus 81 Olr1529 ENSRNOG00000039714 ENSRNOT00000048427 3 1 1 60 11 43153880 43153901 CTTTGTTCTATGGTACTCTCCT 57 43153922 43153940 TGTTTACCTGACCCAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim72 ENSRNOG00000022099 ENSRNOT00000029994 1 1 1 80 1 199454318 199454771 TCCTCATGAAATTCTGCCTG 58 199455623 199455641 GGATATCTAGCCTTGCTGG 57 NA Rattus norvegicus 81 Tmem88b ENSRNOG00000036869 ENSRNOT00000055343 1 1 1 86 5 173231747 173232659 CACTCGAGGGTTCATCCAG 60 173231679 173231698 GAATCCGAACACTATGAGCG 59 NA Rattus norvegicus 81 Yipf2 ENSRNOG00000022043 ENSRNOT00000012138 1 1 1 80 8 22623248 22623266 GCTGTACACCTTCCTGGAG 60 22623106 22623204 ATAAGCCACAGGACCACAG 59 NA Rattus norvegicus 81 Olr1372 ENSRNOG00000049118 ENSRNOT00000074440 3 1 1 60 10 12570905 12570927 GTACTACACAACAAAGATGACCC 60 12570867 12570885 GACCCATGATCCAGACACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk2a2 ENSRNOG00000011933 ENSRNOT00000016386 3 1 1 80 19 9983241 9983262 TAAGATTCTGGAGAACCTTCGT 59 9983303 9987077 GGTGTCTTTGACACAGGGT 60 NA Rattus norvegicus 81 Rbsn ENSRNOG00000011391 ENSRNOT00000015602 2 1 1 80 4 124062591 124064074 GCTCTACGAGAAACTTCGAC 59 124062530 124062550 TTTAATGATGCTGCCATCCTG 59 NA Rattus norvegicus 81 Stpg2 ENSRNOG00000023457 ENSRNOT00000029382 3 1 1 80 2 244638253 244646478 GTGATTATCAGGTGGTTAGAGG 58 244646517 244646537 CTTCTCTTGACAAGAAAGCAG 57 NA Rattus norvegicus 81 Zfyve9 ENSRNOG00000027183 ENSRNOT00000037523 1 1 1 80 5 128286650 128289813 AATCTTCTAGCAGACTTCCGA 59 128286590 128286611 TTTCCGAACTTCCATATCAACC 59 NA Rattus norvegicus 81 Atg7 ENSRNOG00000007486 ENSRNOT00000067532 2 1 1 80 4 146602243 146603834 CAGCCAATGAGATCTGGGA 59 146603875 146603896 TCAAGAGCAGAAACTTGTTGAG 59 NA Rattus norvegicus 81 AC114343.2 ENSRNOG00000052100 ENSRNOT00000090835 1 1 1 60 15 28091642 28091664 GAAGGAGTTACAGCTATGTTCAG 59 28091604 28091623 TCTATGCTGTCCACATACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf217 ENSRNOG00000013323 ENSRNOT00000017831 1 1 1 80 1 28386914 28386933 GGATGCAAATATCGCTACCT 58 28386976 28389611 GAAGAGCTTTCCAGCACAG 59 NA Rattus norvegicus 81 Gpr132 ENSRNOG00000013914 ENSRNOT00000018613 1 1 1 85 6 137654432 137658392 ATGCAACAGGAAATGCCAC 59 137654365 137654383 CTCCTCGTAGGACAACGTG 60 NA Rattus norvegicus 81 Nol12 ENSRNOG00000010209 ENSRNOT00000013764 3 1 1 83 7 120163906 120164375 AGAGGAGGCACTAGAGGAG 60 120164421 120164440 TGATTGGGATGGTCGTACTG 60 NA Rattus norvegicus 81 AABR07055747.1 ENSRNOG00000030254 ENSRNOT00000041966 1 1 1 80 7 8883046 8883064 TCACATATGTGCTGAGCGT 60 8882982 8883004 AATACATGGTCTTCAGGTGGG 60 NA Rattus norvegicus 81 Cox10 ENSRNOG00000024972 ENSRNOT00000034261 1 1 1 80 10 50560738 50560756 GAGATGAAGCTTCACACCG 59 50527532 50560694 GCTTACCACAAGAGCTGTG 59 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 3 2 2 87 18 24744869 24745414 CACTCTGAAGAACAAGTTTGTG 58 24745462 24745480 CCTCTTCTTCAGTTCCAGG 57 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000063783,ENSRNOT00000086588 3 2 2 80 2 199836145 199837433 CCCTCTGATTAAGAGTCATAATGAC 59 199837469 199837489 TCCACAAAGAACTTGTACTGG 58 NA Rattus norvegicus 81 Dxo ENSRNOG00000000422 ENSRNOT00000000483 2 1 1 81 20 4518841 4518859 GAACCCAGAAGGTTTCGTC 59 4518904 4519030 GCCTTCTTGGTCATTCCTG 59 NA Rattus norvegicus 81 RGD1565784 ENSRNOG00000029415 ENSRNOT00000047111 1 1 1 114 10 14543236 14543254 ATGAACAGTGTCCTGTGCT 59 14543411 14543429 CAGACTGAACTGGAGACCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1286 ENSRNOG00000055935 ENSRNOT00000086118 3 1 1 60 15 35762223 35762242 CTACTGTTGTTCCCATGCTG 59 35762263 35762283 ACACTGACATCCTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef39 ENSRNOG00000021433 ENSRNOT00000031336 2 1 1 80 5 58999020 58999249 TGCTCAGTCTGTCCTTTCC 59 58998958 58998977 GACTGTGGTACCATTGTGAC 59 NA Rattus norvegicus 81 Prom2 ENSRNOG00000014710 ENSRNOT00000020354 2 1 1 80 3 120096081 120096099 CCTTCTTGACATAGTCGCC 58 120095849 120096037 AAACACTCAGTGGCATTCC 58 NA Rattus norvegicus 81 Crtap ENSRNOG00000009878 ENSRNOT00000074238 3 1 1 80 8 122398415 122401659 TACTTCAAGGCCAATGACCT 59 122398354 122398372 CATCATCTCGTCCTCAGGA 58 NA Rattus norvegicus 81 Usp39 ENSRNOG00000010930 ENSRNOT00000015562 1 1 1 80 4 100202721 100205700 GGATACTATTAATAGGAGTGTGCTG 59 100202665 100202684 GCATATGCATTGATGTGCGA 60 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011,ENSRNOT00000080404 3 2 2 81 10 17512960 17513482 GAGAAGGTCAAGCAGTTCTC 58 17513526 17513544 GGTTCTCGTGTTTCTGCTG 59 NA Rattus norvegicus 81 AABR07029262.1 ENSRNOG00000029706 ENSRNOT00000039882 2 1 1 60 10 18637212 18637230 GTCCTAAGTCTGTGGCTCG 60 18637254 18637272 GTGGCAAGTTCTTTAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zyg11b ENSRNOG00000010859 ENSRNOT00000014436 3 1 1 81 5 127872876 127872897 CATGCAATTTGTAGGTTTGCTG 59 127867080 127872836 TCCAGATACCTTCAAGTGTCC 59 NA Rattus norvegicus 81 Cirbp ENSRNOG00000015999 ENSRNOT00000021648 3 1 1 104 7 12402860 12402878 CAGGGAGACTCAACGATCC 60 12402695 12402792 CTCCCATCCACAGACTTCC 60 NA Rattus norvegicus 81 Cfap70 ENSRNOG00000007046 ENSRNOT00000035345 3 1 1 80 15 4311586 4311604 CGGAGTGAAGAGGATACGA 58 4311647 4315640 AACAAGCACTTGGTCTTCTC 59 NA Rattus norvegicus 81 Trpm4 ENSRNOG00000020714 ENSRNOT00000041513 1 1 1 80 1 101298702 101298720 CCTCATCGTCTTCTTGCTG 58 101295618 101298660 ACTTTGTTGAAGGTGTAGCTG 59 NA Rattus norvegicus 81 Avp ENSRNOG00000021229 ENSRNOT00000028833 2 1 1 132 3 123118134 123119321 GGAGCTGAGACAGTGTCTC 60 123118020 123118038 GTAGTTCTCCTCCTGGCAG 59 NA Rattus norvegicus 81 RGD1562299 ENSRNOG00000015249 ENSRNOT00000020499 1 1 1 88 9 15514540 15514558 GAGCTCTTTGCTGACAGAG 58 15514610 15516600 CTGAGATGTAGCTCTGCAG 57 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 3 1 1 83 3 122930698 122930716 TCTTCTCCACACTGCTGAG 59 122930762 122930782 CCTTCTATTGGTCCAAGTCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363184 ENSRNOG00000042531 ENSRNOT00000002135 3 1 1 60 11 28693150 28693171 CCTATAGAACCTGTCAGTCTCC 59 28693191 28693210 TAGAATCCAGATCCAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl18 ENSRNOG00000014582 ENSRNOT00000020064 2 1 1 86 1 48034293 48034311 GAGCTCTTAGGTGTAGCCC 59 48034358 48036258 CTTTACAACTCTCAACCTGTGC 60 NA Rattus norvegicus 81 Ephb3 ENSRNOG00000031801 ENSRNOT00000044896 2 1 1 80 11 83528842 83528971 TGACTGCAGAAGATCTGCT 59 83528780 83528798 GCATGTCCTGGATACTGCT 60 NA Rattus norvegicus 81 Scarf2 ENSRNOG00000000288 ENSRNOT00000000313 3 1 1 112 11 87729239 87729257 GTAATGTAACTTGCCCGGC 59 87729333 87729427 CTGATTGGTCTCCAGGTGG 60 NA Rattus norvegicus 81 Ncf4 ENSRNOG00000006940 ENSRNOT00000009544 2 1 1 80 7 119487655 119487674 AGATGATGTGGCCATCTCAG 60 119487715 119488238 TCGATGACAAACACAAAGTGG 60 NA Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000085799,ENSRNOT00000088198 2 3 3 80 10 70537281 70537304 TACCTCTATCTGATGAACTATGCC 60 70537340 70539809 TTCACAATCCTTCACAAAGCTG 60 NA Rattus norvegicus 81 Acadm ENSRNOG00000009845 ENSRNOT00000013238 2 1 1 80 2 260127441 260131979 CTAGTGGAGCACCAAGGAG 60 260127379 260127397 TCGCTGGTAACTGAGTCTG 59 NA Rattus norvegicus 81 Raf1 ENSRNOG00000010153 ENSRNOT00000013831 2 1 1 80 4 147533097 147533115 GCAATGAAGAGGTTGGTGG 59 147532878 147533055 AATGGAAGACAGGATCTGAGG 59 NA Rattus norvegicus 81 Mir344a-2 ENSRNOG00000046685 ENSRNOT00000053682 1 1 1 60 1 122309607 122309625 GGCTAGATTCCAGGTACCA 58 122309565 122309584 TTTACAGCTTACAGTCAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 2 2 2 80 14 1777494 1778388 TGTCAGCAGGTTTCTTCCT 59 1777432 1777452 TTCCCTATGGTTCATGTTCAC 58 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571,ENSRNOT00000012681 3 2 2 80 5 134476376 134476394 CCTTCCACTATGGCATCCT 59 134475647 134476333 GCTTCTCCCATTTGTCTAGC 59 NA Rattus norvegicus 81 Evpl ENSRNOG00000009343 ENSRNOT00000012373 3 1 1 80 10 105113629 105113650 AGATCTCTTCCTGGATGTAGAC 59 105113481 105113589 AGCTGCTTGATGTCTTTCTC 58 NA Rattus norvegicus 81 AC229945.1 ENSRNOG00000056748 ENSRNOT00000074379 1 1 1 80 5 79894287 79894309 AGATTTCACCTCACATGCG 58 79894225 79894244 TTCCTCTTTCTCCACATCCT 58 NA Rattus norvegicus 81 Cul7 ENSRNOG00000017857 ENSRNOT00000024266 3 1 1 80 9 16639561 16639580 AAGAAGTTAAACGCAGAGGA 57 16639247 16639518 AAAGTCCAGAACATGCTCC 58 NA Rattus norvegicus 81 Stx8 ENSRNOG00000003849 ENSRNOT00000005204 2 1 1 80 10 54516282 54518242 AAGACACCTAAGCTTACCCTG 60 54518281 54518302 AAGTAAGTCCTTCAAGAGGTCG 60 NA Rattus norvegicus 81 Kcnab3 ENSRNOG00000008480 ENSRNOT00000011523 2 1 1 80 10 55931800 55931820 TGACCTATGTCATCAACCAGG 60 55931860 55931986 AGTAGGCCTCCATGATTTCTG 60 NA Rattus norvegicus 81 Ptk7 ENSRNOG00000039976 ENSRNOT00000061432 1 1 1 80 9 16713025 16713159 GCTTATCTCGGAGGACTCAC 60 16713201 16713220 GTCCCGTCATATACCTCCAC 60 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 3 2 2 81 1 48029792 48029814 GAGAAGTCAGATAGAAAGCATGC 60 48029427 48029752 TATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000047264 2 1 2 73 8 52753763 52753784 AGATGTTTCTTATCTCACTGCC 58 52762416 52762436 CTGGTAACAGATATTGGTGGA 57 NA DesignNoJunction Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584,ENSRNOT00000078650 1 2 2 80 2 124166674 124166692 GAGCTCAAAGTGAAGTGGA 57 124166736 124168802 CTTCACTTCCTTCTGAGCC 58 NA Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000018523 2 1 2 80 9 15382746 15382765 CAGTATTGTGACTTCCTGGT 57 15380798 15382703 ATACTCCACCTCCACAGAG 58 NA Rattus norvegicus 81 Med20 ENSRNOG00000013852 ENSRNOT00000088314 1 1 2 81 9 15389768 15389788 GGACTGTGAAACTTACCACAC 59 15380772 15380790 CAGTCACTAGCTACCACAC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 1 3 3 98 6 136151629 136153817 CTGTGGTCTGTGAATCAGG 58 136153879 136153897 GGTGGAATTCTACCGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Cc2d1b ENSRNOG00000008634 ENSRNOT00000011670 2 1 1 80 5 128220639 128220971 ATGCAGACCTTCTGACAGAG 60 128221012 128221032 TTGTTTCCTCACTGTCATCCA 60 NA Rattus norvegicus 81 Map6d1 ENSRNOG00000001911 ENSRNOT00000058043 3 1 1 89 11 84321454 84325776 CACGTCTTATAGACAGGAATTCC 59 84325825 84325843 TGAGTCGTGACAACTCTGG 59 NA Rattus norvegicus 81 RGD1560687 ENSRNOG00000004662 ENSRNOT00000042108 1 1 1 60 7 15386240 15386259 CACCTCTGTGACTTCTTGGA 59 15386282 15386300 TCTTCTTGCTGAGCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rho ENSRNOG00000011144 ENSRNOT00000064603 3 1 1 83 4 147835858 147836828 TCATGATGAACAAGCAGTTCC 59 147836873 147836891 CAGAGGCCTCATCATCTCC 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084274 2 1 5 88 14 71542352 71542370 GCTGGGATTATTGACCCTC 58 71542422 71567743 TAGACAAGCAAGCCTTGAG 58 NA Rattus norvegicus 81 Ulk4 ENSRNOG00000019271 ENSRNOT00000074423 1 1 1 80 8 129910120 129910140 GCCATGGTGGAATTAAATCCT 59 129908748 129910082 GCTTGTCATCTTGGATAAAGGAG 60 NA Rattus norvegicus 81 Adi1 ENSRNOG00000008950 ENSRNOT00000011951 2 1 1 82 6 47940337 47942970 TATTGGAAGCTAGATGCGG 57 47943015 47943034 TCCATCCATGAGTAGTTCCT 58 NA Rattus norvegicus 81 Best1 ENSRNOG00000020346 ENSRNOT00000007320 2 1 1 80 1 226040545 226040927 AGAGCCTGATGAATGAGGTG 60 226040484 226040505 CCAATGGGATATTGATCCAGTC 59 NA Rattus norvegicus 81 Snx12 ENSRNOG00000004036 ENSRNOT00000068098 2 1 1 80 X 71120004 71120976 GATAGTAAGATCGTAGTACCACCA 59 71119947 71119967 AAAGATCCCTTCATCTCCTCG 59 NA Rattus norvegicus 81 Oscar ENSRNOG00000055716 ENSRNOT00000090790 2 1 1 80 1 64186679 64186928 CTGCTGGTAACAGATCAGC 58 64186972 64186990 GCTTACAGTGGTTTCTGGG 59 NA Rattus norvegicus 81 Zfp180 ENSRNOG00000029336 ENSRNOT00000026077 3 1 1 105 1 80923852 80929169 GTGTGGAGAACTTTGTTCTACC 59 80933251 80933271 ACAATCTTGAAGTCTGTGCTC 59 NA Rattus norvegicus 81 Galnt1 ENSRNOG00000016207 ENSRNOT00000022117 2 1 1 80 18 16169931 16172348 CCTTTAGGATTTGGCAGTGTG 60 16172390 16172408 GCGTAGCTTTCCGAAACAC 60 NA Rattus norvegicus 81 Mir138-2 ENSRNOG00000035643 ENSRNOT00000053766 1 1 1 62 19 11149801 11149819 CTGGTGTTGTGAATCAGGC 59 11149757 11149775 CTGGTGTCGTGAAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdzk1ip1 ENSRNOG00000008161 ENSRNOT00000011434 1 1 1 190 5 133896293 133897980 TCAACAAGGTCTAGGGAACC 59 133899771 133899789 AGTATCTGCCATCCATGCC 60 NA Rattus norvegicus 81 Snrnp35 ENSRNOG00000001060 ENSRNOT00000001402 1 1 1 80 12 37532102 37538323 CACTTAAGAACATGAGCGAC 57 37532041 37532059 CATCTGTACCATCGATGCT 57 NA InUTR Rattus norvegicus 81 Asb4 ENSRNOG00000009197 ENSRNOT00000012657 3 1 1 81 4 30492242 30498143 AGTTCCACAAGGTGATCCA 59 30498188 30498206 CATCTGATGTGCTCGTAGG 58 NA Rattus norvegicus 81 Vstm4 ENSRNOG00000020078 ENSRNOT00000027198 2 1 1 81 16 9099794 9099814 GTGCAAGAAATCAGCAAACTC 59 9099855 9116888 GGGAGATCACTCTCATTTCTG 58 NA Rattus norvegicus 81 Gnpat ENSRNOG00000019205 ENSRNOT00000026617 1 1 1 80 19 57614874 57622177 CTCCTCTATGCGAAAGACCT 59 57622217 57622238 TTTGAAATCACTGACCTGTCTC 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910,ENSRNOT00000059592 3 2 3 83 12 21756612 21759545 GAGACAGGGAAGGTACCTC 59 21756547 21756565 TGGAGACTTGTGAACCAGG 59 NA Rattus norvegicus 81 Elovl5 ENSRNOG00000006331 ENSRNOT00000010409 3 1 1 81 8 85263850 85278865 TTCTATGAGTTGGTGACAGGT 59 85278908 85278926 TATCTGATTCTCCTGCGCT 58 NA Rattus norvegicus 81 Hoga1 ENSRNOG00000029501 ENSRNOT00000049914 3 1 1 109 1 261307717 261308389 CACTACACCAAGGTTGCTG 59 261308462 261308480 TGCTGAGACAATGTGACCA 59 NA Rattus norvegicus 81 B3gnt5 ENSRNOG00000046258 ENSRNOT00000071848 2 1 1 81 11 84930807 84930825 AACCACTAACTGAAGCGTG 58 84926533 84930763 AATCTGGACCTTTCATCCAG 57 NA InUTR Rattus norvegicus 81 E4f1 ENSRNOG00000009224 ENSRNOT00000012506 3 1 1 80 10 13817054 13817467 TAGAGACACAGGTAGCCAG 58 13816992 13817011 CTGATGGGAAAGTCTCACTG 58 NA Rattus norvegicus 81 Tmsb10 ENSRNOG00000036921 ENSRNOT00000055447 3 1 1 72 7 122433134 122433152 CTTCGATAAGGCCAAGCTG 59 122433187 122433206 CTCAATGGTCTCTTTGGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg10 ENSRNOG00000016342 ENSRNOT00000021941 3 1 1 80 2 19984646 20076768 CCACAGAGGAGAACTTGGA 59 19984584 19984603 ACTCCTGTCTAATCACTGCC 59 NA Rattus norvegicus 81 LOC100912538 ENSRNOG00000050877 ENSRNOT00000074157 3 1 1 81 2 9683774 9685323 TTTAGCTCTGAGAGGTGAGC 59 9685364 9685385 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 Alyref ENSRNOG00000036687 ENSRNOT00000054955 2 1 1 80 10 109772423 109772443 TGTACACTTTGAACGGAAAGC 60 109772170 109772381 GGGATGTAGCTTGCATCCA 60 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894 3 1 2 152 9 16529619 16536286 GTCAGGCTCTACCATCAGG 59 16536402 16536420 CTGAGAACCAGACAAGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 1 1 1 60 5 58198209 58198229 TCTAAGTCTGGGAAGAAAGGA 58 58198086 58198187 AGTCTGTCTGTTCAGTCCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362150 ENSRNOG00000046854 ENSRNOT00000048400 2 1 1 60 4 102794182 102794200 CCATGCTCAGTTTCTTGGG 59 102794334 102794353 CTGAATGTCACATCTGGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Hes3 ENSRNOG00000010893 ENSRNOT00000014536 2 1 1 81 5 169466218 169466236 CTGGAGAAGGCCGATATCC 59 169465784 169466174 GTACTAGCCAAAGTCCTTGC 59 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 2 2 2 80 9 16486867 16487897 CTGAGCAAAGTGGACAGTG 59 16487938 16487959 TCTGTATTTGTTCAGCATAGCG 59 NA Rattus norvegicus 81 Olr1077 ENSRNOG00000054107 ENSRNOT00000083574 1 1 1 60 7 13461238 13461257 TCTCAGATGCCAACTTACAC 58 13461197 13461217 TCCACAAATGACAGGTTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps29 ENSRNOG00000029443 ENSRNOT00000050726 1 1 1 60 7 76980137 76980155 AATACGGGCTGAACATGTG 58 76980179 76980197 ATGAAGCCTATGTCCTTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 3 2 2 80 3 118594312 118597333 CTTTGTTGGAAATGCACGG 58 118594250 118594268 ATGACTGATGTCACTGCTG 58 NA Rattus norvegicus 81 Prkcz ENSRNOG00000015480 ENSRNOT00000021285 1 1 1 80 5 172693299 172694561 GGAGGCATATGGATTCTGTC 58 172693238 172693258 CTTCTGAAGGAAGGTCTACAC 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584,ENSRNOT00000091216,ENSRNOT00000083458 3 5 5 80 10 56194212 56194328 GATGATATTCTGCCCACCAC 59 56194371 56194389 CAACTCTGCAACATCCTGG 59 NA Rattus norvegicus 81 Olr569 ENSRNOG00000046501 ENSRNOT00000007665 3 1 1 60 3 75772042 75772060 ATGGTAGACGCTTTGACAC 58 75772083 75772102 CATTGGACCGACAGAAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tigd5 ENSRNOG00000008686 ENSRNOT00000056527 1 1 1 60 7 116943606 116943625 GTCTACTCGTGGTTCCTCAC 60 116943648 116943666 GGATAACTGGTCCGGACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1450 ENSRNOG00000033659 ENSRNOT00000044332 3 1 1 60 10 44679898 44679917 ATGGACACCTTCCTCTTCAC 60 44679940 44679958 TGTTGCCTATGAGAGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnaq ENSRNOG00000014183 ENSRNOT00000019174 2 1 1 80 1 233581114 233581134 GTCACCTCGATCATGTTTCTG 59 233581174 233616804 CTCCATTCGGTTCTCATTGTC 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746,ENSRNOT00000079201 1 2 2 80 12 39374342 39375606 CCACAAAGTAAAGGAATCCAGAC 60 39374284 39374303 ACACCAGGCAAAGATTTCAC 59 NA Rattus norvegicus 81 Ppp1r3a ENSRNOG00000059350 ENSRNOT00000085596 1 1 1 80 4 41180019 41180134 ACTTTGAAGTTCACAGAGTCC 58 41179959 41179979 TTGATAATTGGCTCCCAAGTC 58 NA Rattus norvegicus 81 Fam217a ENSRNOG00000016672 ENSRNOT00000022369 3 1 1 93 17 30675718 30675737 CATTACACTGAAAGCCAGGC 60 30675790 30675813 AGAGTTGTTTCTCTTGTCTCGA 60 NA Rattus norvegicus 81 Gng11 ENSRNOG00000047914 ENSRNOT00000075326 3 1 1 95 4 28989489 28989507 TTCACATTGAGGATCTGCC 58 28989563 28993222 ATTTAGACACCTGTTGTCTCTG 58 NA Rattus norvegicus 81 Fdx1l ENSRNOG00000023020 ENSRNOT00000028127 2 1 1 68 8 22087023 22087041 TCTCCTACCACCTCCTGAG 59 22086875 22086893 GAGTTCTCCTGGAGCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000088525,ENSRNOT00000066934 3 2 2 80 9 93183045 93183064 TTCTTCCCTTCTATGCCCTC 59 93183106 93188808 TCCAAGAATCCTGGAAGAGC 60 NA Rattus norvegicus 81 Il17re ENSRNOG00000009204 ENSRNOT00000056508 1 1 1 80 4 145424839 145424939 GTCCTGATGTCTCCCATAGAC 60 145424979 145424999 CCAGAACTACACCCAGTAGAG 59 NA Rattus norvegicus 81 Wdr3 ENSRNOG00000019670 ENSRNOT00000026726 1 1 1 80 2 202459554 202459573 CCATGCCTTGTGAATATGCT 59 202457791 202459513 TATTTCCTGTCTTTGTCCCGA 59 NA Rattus norvegicus 81 Reep5 ENSRNOG00000020167 ENSRNOT00000027345 2 1 1 80 18 27158703 27158722 TCTGGTGTTCGGTTATGGAG 60 27141128 27158663 ATGGCTTTCATTGAGATGTAGG 59 NA Rattus norvegicus 81 Hmha1 ENSRNOG00000013220 ENSRNOT00000060648 2 1 1 80 7 12730688 12731039 ATGTGAAGAGTGCTGTCTG 58 12730626 12730644 CCCTGAAGCTTCTTGTGAC 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000052101 2 1 2 60 4 122131671 122131690 AACTCTTTGAGGTCCATGTG 58 122131717 122131736 TGGAGCTTGTCTATCAAGGA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grin2c ENSRNOG00000003280 ENSRNOT00000004477 3 1 1 87 10 103803188 103803207 TAGCTATACGGCCAATCTGG 59 103802777 103803139 CCGCTGAAACTTCTTGTCAC 60 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653,ENSRNOT00000028329 2 2 2 80 1 217782979 217786724 GAAACAAAGAGACTGACAAGG 57 217782919 217782939 AGATGATGGAGACAAGATTGG 58 NA Rattus norvegicus 81 Mir674 ENSRNOG00000040429 ENSRNOT00000062182 2 1 1 61 3 108864470 108864488 TTGCACTGAGATGGGAGTG 60 108864513 108864531 GCCTTGTTCTGAGATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000091832 3 1 18 125 1 43508656 43508674 AGTTCTGCATCCCAACCTC 60 43508763 43509782 ATAACTCTGCTCCCTGGTG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 1 1 18 63 1 43508707 43508725 TCCGTCAGAACACTAGGGA 60 43508750 43518467 TTCTGGTGGTTAGTTCGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 3 1 18 72 1 43475890 43527497 GGTCATGTATGTGATTGTAAGC 58 43527530 43527548 GTGTGAGACCCAGTTAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Cbx2 ENSRNOG00000049215 ENSRNOT00000072534 1 1 1 80 10 108136073 108137531 TCCAAGCTCAAGGAACCAG 60 108137574 108137593 GGAAGAGGAGGAAGATGTGG 60 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675,ENSRNOT00000083672 2 2 2 80 4 65139409 65139430 CACCAAAGAAGAAATGAAGGAC 58 65139470 65141700 GGATGATCACTCCACATGAG 58 NA Rattus norvegicus 81 Tmem216 ENSRNOG00000020692 ENSRNOT00000028079 1 1 1 80 1 226605709 226605729 CCTGTTCTTTCTGAATGGGTG 59 226605249 226605668 AGCAGGAGACCTTTGTACAG 60 NA Rattus norvegicus 81 Tctn1 ENSRNOG00000028523 ENSRNOT00000030604 3 1 1 80 12 39806292 39806310 TTACACTGAGTGCCGAGTC 60 39806350 39808519 GGGCTCCATACTCATATTTAGTG 59 NA Rattus norvegicus 81 LOC100910051 ENSRNOG00000047332 ENSRNOT00000071649 3 1 1 60 2 115207440 115207460 ACCCATGTACTTCTTCCTCAG 59 115207480 115207500 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hhip ENSRNOG00000018268 ENSRNOT00000024616 2 1 1 80 19 31593185 31595385 GGAAGAGATTACGAAAGCGA 58 31595427 31595446 GTAAACGAATCCACCAACCA 59 NA Rattus norvegicus 81 Akt2 ENSRNOG00000018677 ENSRNOT00000025303 3 1 1 81 1 84431168 84431186 CTTTGTCATACGCTGCCTG 59 84431230 84441061 CCACTCTTCCCTCTCATCTG 59 NA Rattus norvegicus 81 Trove2 ENSRNOG00000003434 ENSRNOT00000004701 3 1 1 80 13 60556596 60557231 CCTGAAGTCTAAAGAGGTATGG 58 60556537 60556555 GTCATCTTTCCCAGGTTCC 58 NA Rattus norvegicus 81 Slc44a4 ENSRNOG00000000878 ENSRNOT00000001174 1 1 1 80 20 4607675 4607695 TCGTCCTGGATAAAGTCACTG 60 4607737 4607858 AGAAGGACAGAACACCGAC 59 NA Rattus norvegicus 81 Gmpr ENSRNOG00000017250 ENSRNOT00000023613 1 1 1 87 17 19574418 19574436 CTACTCAGGGATTCCCGTC 59 19571796 19574367 GAACATGGCATGCTGTGAC 60 NA Rattus norvegicus 81 St3gal1 ENSRNOG00000008209 ENSRNOT00000010980 2 1 1 80 7 107898931 107900313 ATTCATATCTGTGATGAGGTGG 58 107898872 107898891 GTTGTTCTCCCAGTAATGGT 58 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 1 2 2 80 5 6040004 6040022 CCCTACGACTTTGACATCC 58 6038086 6039961 AACAATCTGTGGGACTATGG 57 NA Rattus norvegicus 81 Cdkn1b ENSRNOG00000007249 ENSRNOT00000049848 3 1 1 99 4 168689959 168689977 CATTTGGTGGACCAAATGC 58 168690040 168690588 AAGAAGAATCTTCTGCCGC 58 NA Rattus norvegicus 81 Gng3 ENSRNOG00000019570 ENSRNOT00000026539 2 1 1 80 1 225035039 225035058 CTATGAGTATTGGCCAAGCA 58 225034708 225034996 CCTTGGACACCTTTATCCG 58 NA Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000083157 1 1 2 83 1 222619952 222619970 CCACCGACAGTAAGAACTC 58 222619717 222619905 TGGTCTAAGCTGAAGAGGG 58 NA InUTR Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 1 2 2 80 13 55502923 55515774 GCTGCACATTCTTTAGTGGG 60 55502862 55502883 GTCAGACTTGAAGTTGTATCCG 59 NA Rattus norvegicus 81 AABR07062183.2 ENSRNOG00000054265 ENSRNOT00000078121 3 1 1 80 4 164011495 164011513 CAGATGTCAACAAGCCTGC 60 164007787 164011451 AGCTGAAGGAACTTCAGCT 59 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767,ENSRNOT00000086682 1 2 2 80 9 112408362 112408381 GAGATGCCATCACCATAGAG 58 112408422 112409499 CTTTCCTTCTCACTTTCTCCA 58 NA Rattus norvegicus 81 Ifna16l1 ENSRNOG00000033602 ENSRNOT00000040254 1 1 1 60 5 107447388 107447406 TATCCCTGTCCTGCAAGAG 59 107447346 107447366 TGACTCCTTTGATGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lypd6 ENSRNOG00000038980 ENSRNOT00000059588 2 1 1 80 3 35702570 35704321 GCATGAAGGCTACAAGATCTG 59 35704362 35704381 GCATCAGTGTCATTTCGAGG 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461 1 3 4 89 4 165176291 165176311 CCAGACAATTACTGGATTGGA 58 165169861 165176242 GTTTGAGGCAAGTTTAGATGG 58 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000012020 ENSRNOT00000016714 2 1 1 80 5 134372573 134372592 GACATTGTGCTTGACCTGTG 60 134370192 134372530 AGCTAGGTTACGGCAACAG 60 NA Rattus norvegicus 81 Rbm25l1 ENSRNOG00000002871 ENSRNOT00000003832 1 1 1 60 10 10459845 10459864 GCACATAGTTCACCACAGAG 59 10459885 10459905 CTGCTTCTTCATCTAGTACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hcrt ENSRNOG00000018892 ENSRNOT00000025547 1 1 1 143 10 88669655 88670333 TTCTACAAAGGTTCCCTGGG 59 88669531 88669549 AACAGTTCGTAGAGACGGC 60 NA Rattus norvegicus 81 Gprc5d ENSRNOG00000008439 ENSRNOT00000011141 2 1 1 104 4 168882573 168882591 GGATGGAGAACCAGGAACC 60 168873181 168874649 GATCAACAGTCTGCAGCTG 59 NA Rattus norvegicus 81 Tomm20 ENSRNOG00000019980 ENSRNOT00000027088 1 1 1 80 19 59865199 59865218 TTACAACAGACTCTTCCACC 57 59863883 59865157 AGCACTGACAATTCTCTGAC 58 NA Rattus norvegicus 81 LOC100911093 ENSRNOG00000006432 ENSRNOT00000008526 1 1 1 80 4 138865661 138865821 TGTTATAGATTCTAGGGAACCG 57 138865862 138865880 TTGAGAAGAGCATGCTCTC 57 NA Rattus norvegicus 81 Rax ENSRNOG00000016944 ENSRNOT00000022784 2 1 1 75 18 61641265 61641283 TTAACCTACCCGAGGTTCG 59 61638785 61638803 TCTAGTTTCTCCTGGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912034 ENSRNOG00000050469 ENSRNOT00000074048 1 1 1 94 4 31387739 31387757 TTCACATTGAGGATCTGCC 58 31387813 31391468 TTTAGACACCTGTTGTCTCTG 58 NA Rattus norvegicus 81 Slc2a13 ENSRNOG00000015741 ENSRNOT00000021153 1 1 1 80 7 132511330 132581136 CATCAACACTATCATGTACTACAGC 60 132511274 132511292 GCCAGCCATATTGCAAGTC 60 NA Rattus norvegicus 81 Dok3 ENSRNOG00000013564 ENSRNOT00000018232 3 1 1 80 17 9639406 9640197 TGAAGTTTGGCAAGAAATGC 58 9640240 9640258 TTTCTAGCCGAGCTACTCC 59 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000002656,ENSRNOT00000007876 2 2 2 60 9 17212367 17212385 CTGCCCATTAAGGAGTCTG 58 17212325 17212346 CTTCATCCTTTAGAGATGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem140 ENSRNOG00000026965 ENSRNOT00000029845 3 1 1 60 4 62391069 62391088 GCCTTACTCATCATCTTGCT 58 62391109 62391129 TGTCCTTCTTATCTCGTGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf182 ENSRNOG00000018070 ENSRNOT00000024323 3 1 1 143 17 24242724 24289906 CTGGTCAGATCCTTCAGCT 59 24290011 24290031 TATCACATCATCCGAGTCAGG 59 NA InUTR Rattus norvegicus 81 Baiap3 ENSRNOG00000017893 ENSRNOT00000024072 3 1 1 80 10 14604613 14604632 CTTGCAGACATCATCTACGA 58 14604450 14604570 GTCCACCTTAAGGATACCG 57 NA Rattus norvegicus 81 Rn60_10_0702.1 ENSRNOG00000052330 ENSRNOT00000090215 2 1 1 60 10 70476779 70476797 GTAACGGACTTGGAGAAGG 58 70476819 70476839 AAAGAAGGAGCAGTTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem121 ENSRNOG00000005174 ENSRNOT00000006872 3 1 1 60 6 137997549 137997567 GTGGCTACGCTATGATCCT 59 137997589 137997609 AAATAGAGCTTGATCTCCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 2 3 3 80 2 124134792 124138861 CTGGAGAAGATATTGGAGACAC 58 124134733 124134753 TCAACAGAGACCTGAATTCTG 58 NA Rattus norvegicus 81 Agt ENSRNOG00000018445 ENSRNOT00000024917 1 1 1 80 19 57327141 57327160 ATGAACTTGCCACTAGAGGG 60 57324471 57327100 TCTCATCTTCCCTTGGAAGTG 60 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000076258,ENSRNOT00000087175 3 2 2 80 1 85497586 85497604 CTAGAGTTCTTGGCCTCCC 59 85499565 85499702 TCAGTAGAATGTACCGAAGGC 60 NA Rattus norvegicus 81 LOC102549198 ENSRNOG00000046839 ENSRNOT00000074629 2 1 1 60 18 55467200 55467221 ATGTTTGAAGCAGAGGATTTGG 60 55467241 55467260 AGGGAGGATTCTCAGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653,ENSRNOT00000016946 3 2 2 80 2 127696214 127696234 CATTACCTCTCCTTTGGTTGC 59 127696275 127697885 GAATCAAGGATGCTCACCAC 59 NA Rattus norvegicus 81 RGD1565117 ENSRNOG00000033161 ENSRNOT00000045687 1 1 1 60 7 70445556 70445574 TTGTCAAGCTGCACTACTG 58 70445598 70445616 GATGGATTCCTGGTGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ferd3l ENSRNOG00000011091 ENSRNOT00000014731 2 1 1 60 6 53372158 53372176 TATGAGAAGAGGCTGTCCA 57 53372197 53372218 TGAAAGAAATGTAGACGATGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 3 1 1 63 5 135396668 135396689 CTTGAGTAGAAACCAGAATGCT 59 135395774 135396647 AGTATCTTTGAAGATGCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lipt2 ENSRNOG00000016906 ENSRNOT00000022879 3 1 1 70 1 165171100 165171551 AAGATCTGCGCTATCGGAG 60 165171583 165171603 GTAGAACAATTCAGAGCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000078502 2 1 2 80 5 64790193 64790593 GTCTGGACTCAAGGAGGAG 59 64790636 64790655 CCATAACTGTCCATCACGAC 59 NA Rattus norvegicus 81 Tmem70 ENSRNOG00000006608 ENSRNOT00000008680 1 1 1 86 5 2034279 2034300 CCTCTTACATACACAAGTTGGT 58 2021184 2034235 CATTTCACACCAAATACTGTCC 58 NA Rattus norvegicus 81 Tmem116 ENSRNOG00000027480 ENSRNOT00000067503 3 1 1 80 12 40586376 40588932 GTCTGCAGAGGTAAAGTCAC 58 40586315 40586333 ACAAGTGCCTTTATGAGCC 58 NA Rattus norvegicus 81 Dhx9 ENSRNOG00000002735 ENSRNOT00000064860 2 1 1 80 13 70888343 70888364 ACAATTACTTCTCTTTGCCTCC 59 70887975 70888303 ATTTGCAGTCTGATCCAGTC 58 NA Rattus norvegicus 81 Pdlim7 ENSRNOG00000013653 ENSRNOT00000018899 1 1 1 94 17 9659530 9659548 GAATACTGAAGACTGGCGC 59 9659605 9659745 GGTCTTGCATGAACTCTGTG 59 NA Rattus norvegicus 81 Pdlim7 ENSRNOG00000013653 ENSRNOT00000018899 3 1 1 97 17 9659528 9659547 GAGAATACTGAAGACTGGCG 58 9659607 9659746 GGGTCTTGCATGAACTCTG 59 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 2 1 1 94 16 9074178 9074196 GACACCAATCAATGGGACG 59 9074254 9075397 CATTCCTCCTCATGGTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883,ENSRNOT00000068077 3 2 2 80 6 71035997 71036882 GGCTACAGGACTACCAGAC 59 71035935 71035956 CGCTTTCATGGGTAATATAGCG 60 NA Rattus norvegicus 81 Ube2k ENSRNOG00000027088 ENSRNOT00000030485 1 1 1 103 14 44296294 44305789 AAAGATCAATGGGCAGCAG 59 44296209 44296227 GCTACTACTGCATCTTGGG 58 NA Rattus norvegicus 81 LOC100910999 ENSRNOG00000046736 ENSRNOT00000075557 2 1 1 60 11 85015431 85015451 CCATTTCTTCTGTGATGTTCC 57 85015470 85015491 ATAAACCCAAGTGTCCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361944 ENSRNOG00000029172 ENSRNOT00000042226 1 1 1 60 6 95558835 95558853 AGTGAAGCTAGGTACTGGT 57 95558875 95558895 TCTCTTAAAGAAGGTGAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361944 ENSRNOG00000029172 ENSRNOT00000042226 3 1 1 60 6 95558835 95558853 AGTGAAGCTAGGTACTGGT 57 95558874 95558895 TCTCTTAAAGAAGGTGAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734,ENSRNOT00000086756 1 2 2 80 1 16863987 16864005 CAGATAGACGTGAAAGCGG 58 16864048 16864474 ATCAACATGACCAATGACCA 58 NA Rattus norvegicus 81 Evc2 ENSRNOG00000007025 ENSRNOT00000009914 1 1 1 80 14 78179937 78186749 AGCCCTAGAAGAGTTGGAG 58 78179875 78179896 TCCTTACTAATCTGGTTTCGAC 58 NA Rattus norvegicus 81 Nudt21 ENSRNOG00000042983 ENSRNOT00000026297 3 1 1 82 19 11451533 11451555 CCAATTCGGTAACAAGTACATCC 60 11451593 11455346 TATAGTTGGTAAGTGGGTACAGG 59 NA Rattus norvegicus 81 Glul ENSRNOG00000049560 ENSRNOT00000075480 3 1 1 82 13 71333973 71335305 TGTAGAAGAGTTACCCGAGTG 59 71335349 71335367 GATGGAGGTACATGTCGCT 59 NA Rattus norvegicus 81 Aunip ENSRNOG00000022030 ENSRNOT00000039322 2 1 1 119 5 152732312 152732330 AAATGCTGACGTTGCTTCC 60 152732413 152733595 CACCATTTGCCATTCCTGG 60 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000049124 ENSRNOT00000074775 2 1 1 80 17 32090309 32091631 GTCATGGAGTATGTGGAAGG 58 32091674 32091692 GATGGTATCCAGCTCTGTC 57 NA Rattus norvegicus 81 LOC689412 ENSRNOG00000027254 ENSRNOT00000035431 2 1 1 80 13 65551152 65551216 TGGTTATCTGGTGTTGATAGC 58 65551257 65551276 ACATAACCTCTGTCCTCTGG 59 NA InUTR Rattus norvegicus 81 Mrpl21 ENSRNOG00000013845 ENSRNOT00000018848 2 1 1 81 1 218534156 218535214 CCACAAGGATATGTTCCTAAGAC 59 218535255 218535273 TAGTCTCTTCAGCAGGGTC 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000082538 3 1 5 95 20 5416959 5416978 GAAACACAGGTGGAAAGGG 59 5417399 5417554 ATGCTTTACAATCTGGGAGAG 58 NA Rattus norvegicus 81 Fam83b ENSRNOG00000011925 ENSRNOT00000015947 3 1 1 82 8 83618679 83625909 GTATGGTTCTTACAGTTACATGTGG 60 83618621 83618640 ACTCTACAAGGTGTCCTGTG 59 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 1 1 1 86 6 141487858 141488223 GATGGCACTAACTACAGGG 57 141487790 141487808 AACTTGACTGAGGTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 A2m ENSRNOG00000028896 ENSRNOT00000019346 2 1 1 80 4 154348000 154348020 GGAGTAGAAGATGAAGTCACC 58 154348062 154348985 AACAGGATGAGTGACAGGA 58 NA Rattus norvegicus 81 Atp1b2 ENSRNOG00000011227 ENSRNOT00000015076 1 1 1 80 10 56207516 56208371 TTGGGAAGAAAGATGAAGATGC 59 56207457 56207477 AATACATCAGGTCGATGTTGC 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000078114 3 1 3 80 4 164352077 164352097 GGCATGAATGTAAACAGACCT 59 164345868 164352037 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000022022 1 1 3 80 17 30557835 30560011 CTGTATAAGCAGGCCACAG 58 30560053 30560073 ATCCCACTTGGCTTTATTGAC 59 NA Rattus norvegicus 81 Hoxc13 ENSRNOG00000028679 ENSRNOT00000033300 1 1 1 80 7 144532478 144532496 ACAGTCAGGTGTACTGCTC 59 144532540 144537724 GTAGAGGAACCACGTCTGG 60 NA Rattus norvegicus 81 Mir99a ENSRNOG00000035524 ENSRNOT00000053647 3 1 1 61 11 16052158 16052177 TGGCATAAACCCGTAGATCC 60 16052200 16052219 CCCATAGAAACGAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 3 2 2 80 5 153261797 153262442 TGAGTGAGAAAGATCGAATGGA 59 153262483 153262501 GGTCAAAGTTGGCTGTTCC 59 NA Rattus norvegicus 81 LOC100911044 ENSRNOG00000047616 ENSRNOT00000075013 2 1 1 80 1 62968875 62979030 GGTTTCCAATGAGACAGATATGG 59 62979070 62979088 AGGCAGTGGATCTTCTCTG 59 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 1 1 2 86 2 148621025 148621043 GAATCAAAGAGCCTCTGGG 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Tmem30b ENSRNOG00000008046 ENSRNOT00000010923 3 1 1 60 6 96441751 96441772 GTCAACATCACCTACAACTACC 59 96441712 96441732 TAAGGATGATAAGCTTGTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scly ENSRNOG00000020083 ENSRNOT00000027220 1 1 1 80 9 98454962 98454981 GAACTGCGAGACTTATGAGG 58 98455022 98455490 CTCTTACCAAATTCAGCCTCC 59 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506,ENSRNOT00000039993 3 2 2 80 14 820234 820253 GAAACAAACAGCAGACTGCT 59 820295 821486 TGCTCCATATCTGCTGTCTC 59 NA Rattus norvegicus 81 Ddx54 ENSRNOG00000001377 ENSRNOT00000001859 2 1 1 80 12 41477764 41477887 TGAACAGCTCAAGACTTCCT 59 41477703 41477721 ACGACATTCTGTAGCAGGT 59 NA Rattus norvegicus 81 Mybl1 ENSRNOG00000021669 ENSRNOT00000067977 1 1 1 80 5 9303062 9304177 TATTGAATCGGATCCTGTAGC 58 9304218 9304237 GTAGACTTGACAGGAGAAGC 58 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 2 1 1 60 9 18334669 18334687 AACTATGGATTCGGCTCAG 57 18331276 18334648 TTTGGAGAAACTTAACTGTCGG 59 NA DesignNoJunction Rattus norvegicus 81 Mir130b ENSRNOG00000035541 ENSRNOT00000053664 1 1 1 60 11 88129784 88129802 CACTCTTTCCCTGTTGCAC 59 88129825 88129844 ATGCCCTTTCATCATTGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sycp1 ENSRNOG00000016835 ENSRNOT00000023333 1 1 1 80 2 205389123 205391231 GAACAGAACAGCAAAGATTGG 58 205389063 205389084 GTTCACTTGATTTCTTCTGGAG 57 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594 2 1 2 80 7 60320827 60320845 GCGAGCATCCACTTAAGTG 59 60320888 60322022 CTGCAGCAGAGATGTATGGA 60 NA Rattus norvegicus 81 Olr1533 ENSRNOG00000050062 ENSRNOT00000072466 2 1 1 60 11 45666853 45666874 CAAACCTTTACTCTACCCAGTC 59 45666814 45666837 CATTGTTAGAAGACGTACACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561849 ENSRNOG00000021663 ENSRNOT00000039237 2 1 1 119 5 9360838 9364072 AGTCATTGATTCCTCCAGTG 57 9357925 9357943 TCTTCTTGAGGTGTCTGGA 58 NA Rattus norvegicus 81 Urod ENSRNOG00000018211 ENSRNOT00000024719 3 1 1 80 5 135855655 135856407 GCATCTGAGGAAGAGATTGG 58 135855594 135855613 CCCTAGGTTAGCAATGTAGC 58 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 2 2 2 80 4 66144873 66146418 AGAGAACCCAAAGAGACCC 59 66146459 66146480 CCTGATGATATACTCCACTTGG 58 NA Rattus norvegicus 81 Enpp5 ENSRNOG00000010232 ENSRNOT00000013703 1 1 1 86 9 19472995 19473013 GAGTTCAACCGATCGTAGC 58 19470651 19472945 AACCATGGTTGCCTAACAG 58 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000092127 1 1 2 60 20 4020430 4020448 CTCATGAGGCCAGATTCCT 59 4020472 4022406 AGGTTGAAGATGAACCTGG 57 NA DesignRelaxed Rattus norvegicus 81 Pim2 ENSRNOG00000008177 ENSRNOT00000011207 2 1 1 83 X 15463960 15464537 ACTTTGATGGGACAAGGGT 59 15463895 15463913 GTGACCAGACAGTAGCTGG 60 NA Rattus norvegicus 81 Gpi ENSRNOG00000023150 ENSRNOT00000032613 1 1 1 80 1 90090337 90091111 CAACCACTTCAGCTTGAACC 60 90090276 90090294 ACCTCCTTGTTCACAAGGT 59 NA Rattus norvegicus 81 Rassf9 ENSRNOG00000038574 ENSRNOT00000058842 2 1 1 85 7 44146727 44176796 CGGCATAAGAACAGATCTCC 58 44176844 44176862 ACAATCTTCTCCTCCTGGC 59 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 1 2 2 80 1 184387168 184387186 CATCTGTCTTTCACCCAGC 59 184387229 184392550 TTGGCACAGTTTGATTAGGG 59 NA Rattus norvegicus 81 Sh3gl1 ENSRNOG00000049683 ENSRNOT00000074695 2 1 1 80 9 11053093 11053114 CCCTAGAGAAGTTTGAGGAGTC 60 11053152 11053309 TCACCTGCTCAATATCAGTCTC 60 NA Rattus norvegicus 81 Ccnh ENSRNOG00000031656 ENSRNOT00000049423 2 1 1 93 2 13612392 13612416 CAGATCTGAAGAAGTTGCTATTCTG 60 13612464 13612834 GCCTTTCCTCTTCTTTGTAACC 60 NA Rattus norvegicus 81 Prss57 ENSRNOG00000025293 ENSRNOT00000038553 1 1 1 93 7 12802056 12802074 ACAGGTATTTGGCATTGCG 59 12802131 12803282 AGAGCCATTCAGCCTTAGC 60 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 1 2 2 80 7 122131639 122134433 ACTCCACAGATTGATGGGT 58 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 AABR07027277.1 ENSRNOG00000059415 ENSRNOT00000083122 3 1 1 80 17 22662058 22662077 TGTGGATGGTATCTGAGCTC 59 22656205 22662017 GGAAGAAGTGTGAAGTTCCAC 59 NA Rattus norvegicus 81 Akap6 ENSRNOG00000004841 ENSRNOT00000006562 3 1 1 80 6 73868883 73905453 GCATCTTTACAAGAGGTACAGTG 60 73905492 73905511 AAAGCTTCAACCTTGCTGAG 59 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000039050 ENSRNOT00000040023 1 1 1 80 3 25211804 25212044 AACATTGGTGAAGTGCTCC 58 25211742 25211762 ATATGCTCAGATTTGCTGCTC 59 NA Rattus norvegicus 81 AABR07033020.1 ENSRNOG00000018224 ENSRNOT00000024520 1 1 1 80 11 1773325 1773348 TGTTGGCTATGATGAAGACC 58 1773388 1773409 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Tktl1 ENSRNOG00000055557 ENSRNOT00000091029 2 1 1 80 X 156508613 156510211 GAGGATCACTATCTAGAAGGTGG 59 156508555 156508575 CCGATGAACCACAATGTTAGG 59 NA Rattus norvegicus 81 Dr1 ENSRNOG00000048308 ENSRNOT00000074874 2 1 1 83 14 2474217 2474235 TATCTTCCGAAGCCAACGA 59 2468256 2474173 AACTTTCTAGTGCTTGGATGAC 59 NA Rattus norvegicus 81 Gna14 ENSRNOG00000014840 ENSRNOT00000020201 1 1 1 80 1 235336903 235339746 TGCCAAATATTACCTGACGGA 60 235339788 235339806 CGAACACGAAGTACGTCCT 60 NA Rattus norvegicus 81 Cspp1 ENSRNOG00000021718 ENSRNOT00000008480 2 1 1 80 5 8763698 8765611 ACTAGAGTTTGAGAGTAGTCGG 59 8763639 8763659 TGATCGACATTTACACTGGAG 58 NA Rattus norvegicus 81 Kdm2b ENSRNOG00000025702 ENSRNOT00000044071 2 1 1 80 12 39148414 39149431 CTGGATGCCTTAAGATTAAGGA 58 39149472 39149490 GGTTACACTTCGGACACTC 58 NA Rattus norvegicus 81 Vax1 ENSRNOG00000008824 ENSRNOT00000011743 3 1 1 116 1 280337455 280338585 ATCCTAGTCCGAGATGCCA 60 280337357 280337375 CAGTCTGTAGAGCTGCTCC 60 NA Rattus norvegicus 81 Ppp2r3b ENSRNOG00000049270 ENSRNOT00000071648 1 1 1 80 14 1472587 1472775 GATTATGTCACCACGGTGAC 59 1472817 1472836 AATCTCCTGGCAAGAGATCC 59 NA Rattus norvegicus 81 Nfkbia ENSRNOG00000007390 ENSRNOT00000009894 1 1 1 80 6 76268638 76268657 CTCTATCCATGGCTACCTGG 59 76268484 76268595 CCATTACAGGGCTCCTGAG 60 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 1 1 1 76 16 14320959 14323462 TTTGATGTGTTGGCCTTGC 60 14323502 14323520 TCTACCAGTTGAGCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Prss42 ENSRNOG00000031971 ENSRNOT00000051211 2 1 1 89 8 119065660 119066080 TCATTGCATACACAGCCGA 60 119066133 119066151 TGGATGGGAATCACCAGAC 59 NA Rattus norvegicus 81 Atrn ENSRNOG00000021240 ENSRNOT00000028847 3 1 1 80 3 123516101 123519843 TTATTCACTGTCCAGCTTGC 59 123519886 123519904 TCAGGTCCTCACACTTCTC 58 NA Rattus norvegicus 81 Fgf4 ENSRNOG00000020890 ENSRNOT00000028355 1 1 1 179 1 218026049 218026067 GAGACTCTACTGCAACGTG 58 218026631 218027054 GTAAAGAAAGGCACACCGA 58 NA Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000082149,ENSRNOT00000055290 3 2 2 227 7 144778073 144778091 TTCCTGGGCATGAATCCAG 60 144776900 144776919 GAAGAAGACTTGAGGCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911672 ENSRNOG00000049575 ENSRNOT00000051841 1 1 1 80 9 20270911 20271081 CGACAGAATAAAGACTCGATGTC 59 20271121 20271139 CCTCGATCTCAGCTCTTCC 59 NA Rattus norvegicus 81 AABR07065768.1 ENSRNOG00000050944 ENSRNOT00000048463 3 1 1 62 6 140485742 140485877 AAAGGTGTCTGGTGTGAGG 60 140485698 140485717 ACTTCCAGGCTGTACTAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Frmd6 ENSRNOG00000007329 ENSRNOT00000009610 2 1 1 80 6 93350123 93351066 GACTCGCAAGATGATGAAATAGAG 60 93351105 93351123 CACTTCCAGGGACTCTTCG 60 NA Rattus norvegicus 81 Gfer ENSRNOG00000013370 ENSRNOT00000017917 1 1 1 85 10 14060047 14060826 AAGGAAGAGGATAGACAGGAG 58 14059982 14060000 TCACTTCATTGTGAAGGCG 59 NA Rattus norvegicus 81 Crisp3 ENSRNOG00000013496 ENSRNOT00000018163 3 1 1 80 9 24078721 24082341 CACTATACTCAGGTTGTTTGGA 58 24082380 24082400 GTATTTCAATGGTTGGTCAGG 57 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755,ENSRNOT00000077715 2 2 2 80 6 98428247 98431009 TTGGAATCCGGCTATTGTG 58 98428185 98428205 AGCTCATCAAACATAGTGCTG 59 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000022824,ENSRNOT00000023020 2 2 2 80 1 219124078 219124580 GCTTGAAGTCAACAGATTTGC 59 219124622 219124640 ATGGATGAGATCTTGGCCT 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904,ENSRNOT00000036642 2 4 4 80 8 125086632 125086652 CTTTGGACACGTGATATCCAC 59 125070956 125086590 GACTCCATTCTGGCAAAGC 59 NA Rattus norvegicus 81 Gpr65 ENSRNOG00000003806 ENSRNOT00000005055 1 1 1 60 6 122255831 122255850 TGGAAAGCAGACATTTACGG 59 122255871 122255891 GACACAGTTTAGACTCGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051626.1 ENSRNOG00000029562 ENSRNOT00000040689 2 1 1 80 3 18244371 18244412 AAACCAGGACAATGCATCC 58 18244309 18244327 AATGGTGAAGTCTGTCCCA 59 NA Rattus norvegicus 81 AABR07051670.1 ENSRNOG00000047535 ENSRNOT00000070878 3 1 1 117 3 19045255 19045444 TATCACAGTCACAGTGTCCA 58 19045524 19045542 GTAGCTTACACTGGAGCTG 58 NA Rattus norvegicus 81 Rbm19 ENSRNOG00000001397 ENSRNOT00000001891 1 1 1 80 12 41977176 41977194 CGGCCATTGTAGAGTTCCT 60 41976418 41977132 GGACATGGTGGAACTTGGA 60 NA Rattus norvegicus 81 AABR07063995.1 ENSRNOG00000056931 ENSRNOT00000042029 2 1 1 60 6 59531322 59531341 TCTCCAAGATTACCTGCACC 60 59531281 59531300 ATGGCTGAGACTAAAGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct8 ENSRNOG00000001592 ENSRNOT00000002169 3 1 1 80 11 27132486 27132592 CACATCATATGGAGAAACGTG 57 27132426 27132445 CGTGGAATAGCTTCAAATGC 58 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754,ENSRNOT00000067104 2 2 2 80 9 17747371 17747390 CAAGAGCTTCAAGTCGAAGG 59 17747431 17747721 TTTCCAGAATCGTCTTTGTCC 59 NA Rattus norvegicus 81 Myd88 ENSRNOG00000013634 ENSRNOT00000018341 1 1 1 82 8 128024560 128024579 GTTTCTGACGATTACCTGCA 58 128024243 128024515 TTCTGTTGGACACCTGGAG 59 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 1 2 2 80 8 78892863 78892883 AGATGCCTCTTCTGTAGTCTC 59 78892923 78893340 CAATTTGTACCTTGTGATGGC 58 NA Rattus norvegicus 81 Dapl1 ENSRNOG00000005743 ENSRNOT00000007632 3 1 1 131 3 45539341 45539359 CCAGTTACAACTGGCACTC 59 45539454 45548546 ATCCCTCCAGCTTTCACTG 59 NA Rattus norvegicus 81 Vom2r53 ENSRNOG00000007730 ENSRNOT00000010203 3 1 1 81 7 13177247 13183153 ATTTCCAACGAGACAGATGTG 59 13183196 13183214 TCAGGCAGTGACTCTTCTC 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 3 1 2 142 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120114 4124693 ATGAGACACTGATCCTCTCAG 59 NA Rattus norvegicus 81 Trhde ENSRNOG00000005278 ENSRNOT00000007461 1 1 1 80 7 57296463 57296481 AACCTACAGCAAGCTTGGA 59 57294982 57296422 CGTAGCTCTTCATGTTGATAGG 59 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000087534 2 1 2 81 1 165646311 165647841 ACCTATCAGGCAACAATTGG 58 165649278 165649296 CCCATAATTGCAATCGCAC 58 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839,ENSRNOT00000046849,ENSRNOT00000045165,ENSRNOT00000025536 3 4 4 80 1 140141579 140142657 GAACATCAGTCAGTGTGATCTC 59 140141520 140141541 ATTACAGCATTGTCTCCTTCTC 58 NA Rattus norvegicus 81 AABR07064667.1 ENSRNOG00000004163 ENSRNOT00000005511 3 1 1 60 6 89932870 89932890 CTCAGTCACTGGAAACTTTGG 59 89932830 89932848 GCTCGGGTCATATTTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 2 2 3 102 8 22967060 22967651 GACAGTTCGAAGATTCGATTCC 60 22967714 22967732 GTAGAAGGGATGGGACAGG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000016819 3 1 3 242 8 22966769 22966787 TGAGGCGGGTACTAAATGC 60 22966992 22967651 GGAATCGAATCTTCTGGAGC 59 NA DesignRelaxed Rattus norvegicus 81 Mpdu1 ENSRNOG00000012162 ENSRNOT00000017201 3 1 1 80 10 56262903 56262921 GTTCCTGACACTACAGACG 58 56262745 56262860 AGGAAAGCAACTCCTTTCAC 58 NA Rattus norvegicus 81 Sfrp5 ENSRNOG00000014940 ENSRNOT00000020182 2 1 1 80 1 261445860 261445878 AGTTTCCTCTGGACAACGA 59 261444078 261445816 AGATCTTGGTCACTGGAGG 58 NA Rattus norvegicus 81 Mutyh ENSRNOG00000017887 ENSRNOT00000024375 2 1 1 80 5 135673491 135673509 CCACCTGTGTTGTAGAGCA 60 135673553 135673666 CCAGCAGACCTGAGTTAGG 60 NA Rattus norvegicus 81 Styxl2 ENSRNOG00000004453 ENSRNOT00000005884 3 1 1 60 7 62911533 62911555 TCTGTTCATTCTGGTACTACAGG 60 62911573 62911593 CAAAGTCACCATCATCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062266.1 ENSRNOG00000049892 ENSRNOT00000073394 3 1 1 61 4 166602670 166602691 AAGAATCTGATAGGTGGAGGAG 59 166602713 166602744 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Trpc2 ENSRNOG00000020188 ENSRNOT00000048172,ENSRNOT00000045726 1 2 2 80 1 167189410 167189429 TCATGGTGATTGTGCTACTC 58 167189472 167190144 CTACATCAGCATCGTCCTC 58 NA Rattus norvegicus 81 Cxcl16 ENSRNOG00000026647 ENSRNOT00000032926 1 1 1 80 10 57063700 57063931 TTTATCAGGTTCCAGTTGCAG 59 57063640 57063660 AAAGCAGTTCACTAGTTCACG 59 NA Rattus norvegicus 81 Bhmt ENSRNOG00000011200 ENSRNOT00000015336 1 1 1 80 2 23246244 23246264 CAGACCTTCACTTTCTATGCA 58 23244857 23246204 CTTCTGCCCAGATATCTTCTC 58 NA Rattus norvegicus 81 Ccdc97 ENSRNOG00000020675 ENSRNOT00000028065 1 1 1 80 1 82506792 82507068 ACAGTGATGAGGAAGACCAG 59 82506731 82506749 CTCGAAGGATCAGCCTCTC 59 NA Rattus norvegicus 81 Lysmd2 ENSRNOG00000010642 ENSRNOT00000014301,ENSRNOT00000083410 2 2 2 85 8 82574860 82576117 GAAGAGAACAGGGATGAAGAG 58 82576164 82576182 TCTGTGATCTGGCTCAGTC 59 NA InUTR Rattus norvegicus 81 Nqo2 ENSRNOG00000017820 ENSRNOT00000024141 1 1 1 80 17 32135157 32135176 GGTACAGCAGAGATGTACAC 58 32132711 32135115 CAATGTACCATGCTGAAGTG 57 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542,ENSRNOT00000040187 2 2 2 80 2 136997589 136998112 GCCGAGTTAACAGTTCTGC 59 136998156 136998174 CTCCCTGTTCACTGTCTCC 59 NA Rattus norvegicus 81 LOC100360411 ENSRNOG00000039601 ENSRNOT00000060703 1 1 1 95 16 15106093 15106112 TACAGCCGTGGTTCTACAC 59 15106016 15106034 AAGAGTGTATGCCCAGTCC 59 NA Rattus norvegicus 81 Slco6b1 ENSRNOG00000019252 ENSRNOT00000026099 3 1 1 80 9 104427980 104437177 CTTCGTGCTCTTTGGTATCTG 59 104427920 104427938 CAAAGCCAAGGACTCTGTG 59 NA Rattus norvegicus 81 Pik3c2g ENSRNOG00000034228 ENSRNOT00000041499 2 1 1 80 4 174017144 174017165 AAATACGTACACGACAATCTCC 59 174017205 174032288 ACTCTGCTTTATCTTCGTGG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302,ENSRNOT00000027271 1 2 2 80 5 137053204 137053223 CTGCAATGAAGACATCTGTG 57 137052958 137053162 TGTACAGGATCTTGAAGGGT 58 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 3 2 2 80 1 166433675 166453787 AGATCAAGTGCAGGATGGA 58 166453828 166453849 TCTTTCGGTATTCTATGTCGTG 58 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 1 2 2 80 5 59533404 59533423 CCCTTCCTATGACAAACTGC 59 59528969 59533363 TTTACATCATCACCTAGCCAC 58 NA Rattus norvegicus 81 Rgma ENSRNOG00000012874 ENSRNOT00000076446 2 1 1 80 1 134732175 134732193 ATTACCTGAACGTGCAGGT 59 134732237 134740039 AGATGATGGTGAGCTTGCT 59 NA Rattus norvegicus 81 Angptl6 ENSRNOG00000020603 ENSRNOT00000027963 2 1 1 80 8 21896999 21897017 CTGGAGATTCCCTCTCCTG 59 21895783 21896958 CACAGTTGCCAGAATATGAGTC 60 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000059465 ENSRNOT00000086907 2 1 1 60 17 34746600 34746618 AGATGCCGAGAGGAATGAG 59 34746642 34746660 AGAAACTGAAGAGCAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir154 ENSRNOG00000035600 ENSRNOT00000053723 1 1 1 60 6 133888591 133888611 GCTTGAAGATAGGTTATCCGT 58 133888632 133888651 TCAACCGTGTATGATTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157,ENSRNOT00000066711 1 2 2 80 1 204267470 204271693 TGAATAGGATCATTATCGGAGAGG 60 204267413 204267434 TGCTGTTGTCATAGAAGAAGGT 60 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 2 2 2 80 7 119705872 119706590 GCCAGCAGATCCTAAGGAG 60 119705810 119705828 AAGAAGCCAAAGAAGCAGC 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 2 1 2 120 16 85305323 85305428 GGAGTCAAACTCCCAACAC 58 85280726 85280745 GAAGCCATGGAACAAATGTG 58 NA Rattus norvegicus 81 Cxadr ENSRNOG00000001557 ENSRNOT00000050701 2 1 1 80 11 16857092 16857803 GCTAGCAGAAATGACTTCACC 59 16857845 16857863 TGGACTGTGCAACTGTAGG 60 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 3 2 2 83 9 19126820 19134321 CATGTGGTCAAGATTGTGGC 60 19126756 19126774 ATTCTTGAGGTACCGCCAC 60 NA Rattus norvegicus 81 Lhpp ENSRNOG00000017097 ENSRNOT00000022971 3 1 1 80 1 204648267 204648286 ACGCTATTACAAGGAGACCT 58 204648328 204649234 TCGATACCACAGGCATACTC 59 NA Rattus norvegicus 81 Ccdc103 ENSRNOG00000002905 ENSRNOT00000003890 1 1 1 80 10 90985986 90986384 CCTATGAGGAGTTCAGAGGG 59 90986424 90986445 ATCTCCTTCCTCCTACTTTGTC 59 NA Rattus norvegicus 81 Ccdc103 ENSRNOG00000002905 ENSRNOT00000003890 2 1 1 81 10 90985986 90986384 CCTATGAGGAGTTCAGAGGG 59 90986424 90986446 AATCTCCTTCCTCCTACTTTGTC 60 NA Rattus norvegicus 81 Hddc2 ENSRNOG00000021442 ENSRNOT00000029444 1 1 1 80 1 28593034 28593053 AGGCCATGAAAGAGATAACC 57 28583630 28592991 GGGTCTCATACTCTTCCCA 58 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 1 2 2 80 19 14552762 14552780 TCATCATGGAAGGTGGAGC 60 14552824 14553133 CATCTTCCCGCATCTTGTC 59 NA Rattus norvegicus 81 RGD1563986 ENSRNOG00000011854 ENSRNOT00000015921 1 1 1 80 4 68573381 68578287 GTATCCTGAGATGAAGATCACAC 59 68573323 68573343 AGAATGAGGATCTGTTCTCCA 58 NA Rattus norvegicus 81 Gpn3 ENSRNOG00000001278 ENSRNOT00000001722 2 1 1 80 12 39677818 39677836 CCGATCTGTCCAGGTAGTC 59 39674752 39677774 ATCAGTTCCCGGATGTCAG 59 NA Rattus norvegicus 81 AABR07059632.1 ENSRNOG00000033874 ENSRNOT00000047419 3 1 1 82 4 28246278 28246927 ATTAACTTCTGTCGCAACCTG 59 28246216 28246234 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 LOC100912604 ENSRNOG00000046379 ENSRNOT00000071712 3 1 1 80 3 14589845 14590602 ATCGATGAGGATGTCATTGAG 58 14590644 14590662 GAGAGTCAGCTTTGAGCTG 58 NA Rattus norvegicus 81 Ccrn4l ENSRNOG00000010799 ENSRNOT00000014348 2 1 1 60 2 140302960 140302979 GTTATGCAGTGGAACATCCT 58 140304949 140304969 ACTGGACAAAGTTGTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Ibsp ENSRNOG00000002158 ENSRNOT00000002938 1 1 1 82 14 6802640 6803211 CTACCCAAGAAGGCTGGAG 60 6802576 6802594 TCCTCCTCTTCCTCTTCCT 59 NA Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370,ENSRNOT00000066431 2 2 2 82 7 118179223 118179241 ATAGTGCTGATGCAGACAG 57 118176518 118179178 GGTAGCATTATTCACCTCGA 57 NA Rattus norvegicus 81 Fbxo36 ENSRNOG00000017053 ENSRNOT00000022901 3 1 1 80 9 92435928 92435949 TTTGAAATTGTAGGACAAGGCC 60 92435986 92477211 TCTAAAGATGATCTGAGTTCGGG 60 NA Rattus norvegicus 81 Cacna1f ENSRNOG00000010348 ENSRNOT00000066489 2 1 1 80 X 15737252 15737270 ATTTACGCCATCATCGGAC 58 15736591 15737208 TGCCTCCATATCAGATCCC 58 NA Rattus norvegicus 81 Nppc ENSRNOG00000018854 ENSRNOT00000025582 3 1 1 133 9 93734808 93734826 CAACAAGAAGGGCTTGTCC 59 93731904 93731922 AAGGATGACCTCAGTGCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 1 1 1 60 1 31531972 31531991 TCACTGAGCTAAGTGTAGCT 58 31532014 31533629 GGGCTAAGCAATGTTTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Plxna4a ENSRNOG00000013072 ENSRNOT00000017536 1 1 1 80 4 59473485 59476635 TTGAATATAAGACCCTGGTCCTG 60 59473427 59473446 AGTTGAGGATCTTCACTGGG 59 NA Rattus norvegicus 81 LOC681990 ENSRNOG00000047498 ENSRNOT00000051451 1 1 1 60 1 60633932 60633950 CGGAAGCTCAATGGTTGTC 59 60633890 60633909 GCAGTAGATGTGTTGAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem246 ENSRNOG00000006800 ENSRNOT00000008883 3 1 1 60 5 64849860 64849880 AGATGATTATGGTGATGACCC 57 64849820 64849843 GACATAGTCTTGCTTCTCTTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxn ENSRNOG00000008178 ENSRNOT00000050232 3 1 1 80 10 64431728 64431748 ATTCCTAGATGCCACTACTGG 59 64428422 64431686 AATTCCAGACCTTCTGGGT 58 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 2 2 2 80 3 72016570 72016591 ACCTAATGAAGACTGTAAGCCA 59 72015402 72016531 CTTACATTTCTAAGGCAGCCA 58 NA Rattus norvegicus 81 Khdc1c ENSRNOG00000028595 ENSRNOT00000051403 2 1 1 80 9 27546613 27546748 AGGAATACATATTTGGCCCG 58 27546791 27546809 CCCTTTCCAGCTGAATGAG 58 NA Rattus norvegicus 81 Sgsm3 ENSRNOG00000018745 ENSRNOT00000025382 1 1 1 80 7 122231346 122231514 GTTTATTGAGGAGGCAGCAG 59 122231556 122231575 TAGGTCTTACAGAGCACCAG 59 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 3 2 2 88 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371888 67372037 TCCAGCTTCACCTTATGGG 59 NA Rattus norvegicus 81 Olr1421 ENSRNOG00000050694 ENSRNOT00000051126 1 1 1 60 10 44081520 44081541 CTGCTGTCTATAACTACATGCT 58 44081481 44081499 ACCACCATGTTCTTCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmrn2 ENSRNOG00000051977 ENSRNOT00000084422 2 1 1 80 16 10743634 10743763 CAGAATTTGAGTCTCTTGGCA 59 10743805 10743823 GACTGAAGTGTGCTTCCAG 59 NA Rattus norvegicus 81 Grk4 ENSRNOG00000011847 ENSRNOT00000015894 2 1 1 80 14 81268745 81270614 CTTTCTGTCCTGATCCTGAG 57 81268684 81268702 GGTTGACTCCTTTCACCAC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000064168,ENSRNOT00000074954,ENSRNOT00000073696,ENSRNOT00000072244 1 6 6 80 13 84522992 84523011 AGGTCCTGTACTATGTCGAG 58 84523051 84527030 AGATGGTGTTGTTATATCTCCC 58 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034,ENSRNOT00000018552 1 2 2 80 9 27676748 27677020 CTCACAGCAAGGAATTAATCAC 58 27676689 27676709 CCACAAGATAGACAAGGAAGG 58 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 2 2 2 80 5 8989500 8990458 TGATTGGTCAGATGGATTGC 58 8989439 8989458 AAGACTCCTTGCAGTTAACC 58 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638,ENSRNOT00000061871 3 2 2 80 6 7976438 7977661 CAACCTGTGGATAGTACCTG 57 7977704 7977722 AACTGAATCTGCATCAGCC 58 NA Rattus norvegicus 81 Olr1196 ENSRNOG00000048325 ENSRNOT00000044652 1 1 1 60 8 40259428 40259446 TGTGATGGGTTTCTCTGGG 59 40259467 40259488 ACAGAAGGTCAGATTCATTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 3 2 2 80 2 122790958 122790977 TAGAACGAGACTTTGGTGGA 58 122791019 122792513 GGACTTCACATGTGTTGGAG 59 NA Rattus norvegicus 81 Ppp2r1b ENSRNOG00000010922 ENSRNOT00000064290 2 1 1 80 8 55298079 55298480 CATTCTAGACACCAACGCC 59 55298521 55298542 TTGACATCCATGTCTTCATCCT 60 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 1 2 2 80 7 18600666 18600685 GTCCTTCATTGAGACCTCAG 58 18599923 18600625 ATACGGTAGATTTCTGTGAGG 57 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 3 2 2 80 7 18602064 18612050 ATTCAAAGTGGTGCTTATTGGG 60 18602005 18602024 AGGTTGAACTCGTTTCTGGT 60 NA Rattus norvegicus 81 LOC102547118 ENSRNOG00000039305 ENSRNOT00000060213 3 1 1 123 X 17252371 17252825 TCAGGTCCCAAGGTAAAGC 59 17252266 17252285 ATGGAGAAGGTTTCAGGCTC 60 NA Rattus norvegicus 81 Tmx2 ENSRNOG00000005308 ENSRNOT00000007914 1 1 1 80 3 72073862 72074351 TTTCTGAGGAGAATGTGATTCG 59 72073803 72073821 TGTCTCCACCCTTTGAGAG 59 NA Rattus norvegicus 81 Phtf1 ENSRNOG00000019785 ENSRNOT00000026863 1 1 1 80 2 206489779 206490949 CCAAGTTGTTAAAGGAGCTGG 60 206490985 206491009 CTCTTGTGATGTTGTAGATTAAGGG 60 NA Rattus norvegicus 81 Krt24 ENSRNOG00000010970 ENSRNOT00000014851 2 1 1 85 10 87192685 87192703 TTGTGACCTGGAGATGCAG 60 87192412 87192636 GCAGGCACTTCATTTCCTC 59 NA Rattus norvegicus 81 Wisp2 ENSRNOG00000010666 ENSRNOT00000014346 3 1 1 85 3 160212100 160215426 TGTGTCTCTTGGATGAGGA 58 160215474 160215493 CCTGCAATTGGGTTTAAAGG 58 NA Rattus norvegicus 81 Ppp4r1 ENSRNOG00000013733 ENSRNOT00000066793 1 1 1 80 9 113540115 113542249 ACCAGAATAACCAGGTGAGG 59 113542292 113542310 CATCGAGTCGCTCAATCAG 59 NA Rattus norvegicus 81 Rps28 ENSRNOG00000042886 ENSRNOT00000068323 1 1 1 81 7 18683273 18683380 CTGGCTAGGGTAACTAAAGTG 58 18682352 18682373 TGTCATCCATAAATTCCACTCG 59 NA Rattus norvegicus 81 Xrcc5 ENSRNOG00000016105 ENSRNOT00000021656 3 1 1 80 9 79659379 79662141 TGGTCCGGTAATAAGGCAG 59 79662184 79662203 GGATTCTTCACCAGGAAAGG 58 NA Rattus norvegicus 81 Aloxe3 ENSRNOG00000007454 ENSRNOT00000010141 1 1 1 80 10 55713961 55713979 CTCTGTGGTTCACTTTCCC 58 55714023 55715242 ATGGTTCTTGCTGTTCCTG 58 NA Rattus norvegicus 81 Synm ENSRNOG00000014030 ENSRNOT00000050832 3 1 1 80 1 128701347 128701366 CTTGTTGGAAGGAGAAAGCA 58 128698300 128701304 GTGTTTCTGGACTCTCGTG 58 NA Rattus norvegicus 81 Ywhab ENSRNOG00000010945 ENSRNOT00000016981 1 1 1 84 3 160393157 160393175 CAGATGGGCAAGGAGTACC 60 160393220 160395210 GATATTTGTCCAACAGCTCCAG 60 NA Rattus norvegicus 81 Nup88 ENSRNOG00000006126 ENSRNOT00000009015 3 1 1 81 10 57601648 57602451 CAACTGTGAATTGTAGCACCA 59 57601587 57601605 CATGCAGCATGCTTCAGAG 60 NA Rattus norvegicus 81 Fam150a ENSRNOG00000048703 ENSRNOT00000073694 1 1 1 80 5 12898115 12900708 CATTTCACAGGACCTGTCAC 59 12898054 12898074 CGAGCAATCTCTGGTATTGTG 59 NA Rattus norvegicus 81 Slc3a1 ENSRNOG00000007006 ENSRNOT00000009581 3 1 1 80 6 8285328 8285347 TCCCATGTACCAGATCTACC 58 8285388 8288811 TTCTCTTGGATACCTTTCAGG 57 NA Rattus norvegicus 81 Lurap1 ENSRNOG00000023459 ENSRNOT00000035348 1 1 1 197 5 135001567 135001585 TGACTTACGAGACGTGGAG 59 134993072 134993090 ATCTTCACATCGATGGCTC 57 NA DesignNoJunction Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000039553 2 1 2 83 20 4167915 4168120 CAAAGAGGACTGGAAGATGG 58 4170713 4170734 TCATGATCTATCATCACAGGAG 57 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000077950,ENSRNOT00000039553 2 2 2 60 20 4170825 4170843 TGACAACATCATCACGCTC 58 4170866 4170885 CACCTCCCAGTAGTATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 2 1 1 60 3 148051634 148057400 CGGAACTGGTAATGTCAGG 58 148051592 148051610 CAGAATCCTCTGTTGCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Cebpz ENSRNOG00000005087 ENSRNOT00000006824 2 1 1 80 6 1526883 1528763 CAATTTGAAAGGTGGCAAGC 59 1526822 1526842 TTTGTATGTTCAGCTCCACAG 59 NA Rattus norvegicus 81 Asmtl ENSRNOG00000028166 ENSRNOT00000036606 1 1 1 130 12 18533988 18534086 GATGTTAACCAGGCTGAACG 59 18534282 18534300 AGAATGTCACCAGCGTCTC 60 NA Rattus norvegicus 81 Snx20 ENSRNOG00000014202 ENSRNOT00000019130 1 1 1 80 19 19399773 19399793 AATGCATAACAAGGACCAGAC 59 19399835 19401519 CATCTTGGGCTTCTTCTGG 58 NA Rattus norvegicus 81 Uap1 ENSRNOG00000002926 ENSRNOT00000058560 1 1 1 80 13 88464953 88464972 TGAAGGATGCCAATGATGTG 59 88464085 88464912 CATAGCCTTCAAGTCCTTCTC 58 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000042750,ENSRNOT00000047843 3 2 2 80 11 31974697 31974718 ATTGATGTTGCTATGTCTGGTC 59 31974757 31976093 GCGAACTCTTCTAAAGGAAGG 59 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 2 2 2 103 7 70479897 70480270 GGATCAAATGTCGTTCGTCC 59 70479813 70479831 TCTCCTTGCTCAGGAAGTC 59 NA InUTR Rattus norvegicus 81 Elmod1 ENSRNOG00000009054 ENSRNOT00000012041 1 1 1 80 8 58500950 58500968 TTCCAAGGTGATGATCCGA 58 58499387 58500906 CCGTTCTGCGAAATATTGC 58 NA Rattus norvegicus 81 Dcstamp ENSRNOG00000004704 ENSRNOT00000006243 3 1 1 60 7 78650445 78650463 GGAGAAGTCCTGAGTGTCC 59 78650487 78650505 CCACAGAAGTCAGAAGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morn5 ENSRNOG00000026111 ENSRNOT00000036495 2 1 1 80 3 15385042 15386550 CTGAAGCCCTCAGGTATCTC 59 15386591 15386611 ATCTCCACAGTCATAGTAGCC 59 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 3 2 2 94 8 117325016 117332220 CACTTGTTCAGCACAAACTG 58 117332276 117332295 GCTTCAGTGAATTTGGAAGC 58 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 1 2 2 81 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473130 38473148 GTTGATGACATCTCCACCG 58 NA Rattus norvegicus 81 AABR07060287.1 ENSRNOG00000049746 ENSRNOT00000043147 1 1 1 84 4 66091873 66091982 ACATCCCACAAAGCAAAGG 59 66092029 66092048 GCAGTGTTGTTCCAAATCTC 58 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 3 3 3 91 19 21448285 21455724 CATCACCAGATACACCAGAG 58 21448213 21448231 CTTCTGCAACTTTCACTGC 58 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000090420,ENSRNOT00000080507,ENSRNOT00000034991 3 3 3 80 6 10380497 10380518 AAGATCGAAGTAATCGAGAAGC 59 10380558 10381515 TTCATTGAAGTCCGTCTGAG 58 NA Rattus norvegicus 81 Rad54l2 ENSRNOG00000013570 ENSRNOT00000018475 2 1 1 80 8 115409179 115409411 TTACATATGAATGGGCCAAGG 58 115409119 115409139 AAAGAAGTACCATCTTGGGAG 57 NA Rattus norvegicus 81 Arid2 ENSRNOG00000004831 ENSRNOT00000006970 2 1 1 80 7 137751518 137751630 AGGCTCATGAAGATACACCA 59 137751673 137751691 CGATGTCGTTAATGCCCAG 59 NA Rattus norvegicus 81 Ckap2l ENSRNOG00000026143 ENSRNOT00000039794 1 1 1 81 3 121804885 121804903 TACTGGCAAGTAAAGGCCC 60 121799990 121804840 AGCTCCTGTATTGGTGCTG 60 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653,ENSRNOT00000081878,ENSRNOT00000006727 1 3 3 80 14 72335805 72335824 CTTGCATTGAAGAAGATGGG 57 72335603 72335762 AAGGACGGATTTGAACAGG 58 NA Rattus norvegicus 81 Eva1c ENSRNOG00000002072 ENSRNOT00000002838 2 1 1 84 11 31062873 31062891 AATTACCACTTCGGAAGCC 58 31062937 31066503 TGAGTATGTTCTTGGGAACAC 58 NA Rattus norvegicus 81 Ptgs1 ENSRNOG00000007415 ENSRNOT00000010218 1 1 1 80 3 15579229 15581069 CCAGGAGTTCACAGGAGAG 59 15581111 15581131 GGGTAGAACTCTAAAGCATCG 58 NA Rattus norvegicus 81 Rbx1 ENSRNOG00000058914 ENSRNOT00000086603 1 1 1 86 7 122703501 122705873 GGATCTTTGTATCGAGTGTCAG 59 122705920 122708668 AAAGCGTGGTTACAGACTC 58 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 1 2 2 92 13 89300245 89300760 TGTCCAAGAGTTGTTCGCA 60 89300171 89300189 TTTGTCTCACAGCTCAGGG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000089629,ENSRNOT00000014230,ENSRNOT00000083233 2 5 10 89 10 87121348 87122050 CTTTAATGGTTCATCAGCGGA 59 87121279 87121298 TGCTTTCCAGGAATTTCCTC 58 NA Rattus norvegicus 81 Tmem87b ENSRNOG00000017443 ENSRNOT00000023569 2 1 1 80 3 121380573 121383236 CAGCAAATAATCAGAGGTATGC 58 121383274 121383295 CAGATGTTACCATGAATTCCTC 57 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975,ENSRNOT00000051687 1 2 2 80 4 70968644 70968666 GTAGTGAGGAGATTGTTAGACTG 58 70968394 70968608 GTAGTACTGTATTTCCCAAGGAG 58 NA Rattus norvegicus 81 Hsd3b7 ENSRNOG00000019080 ENSRNOT00000025933 1 1 1 90 1 199250222 199250662 GTCTACGTTGGCAATGTGG 59 199250716 199250734 AGAAATACACCTGGCCACC 60 NA Rattus norvegicus 81 Fpgs ENSRNOG00000050780 ENSRNOT00000070916 1 1 1 80 3 11723169 11723269 CCAACATCATCAGAAAGCCA 59 11723108 11723128 CCACTGTATCTCCTAGCAGAC 60 NA Rattus norvegicus 81 Chchd5 ENSRNOG00000018491 ENSRNOT00000024942 2 1 1 90 3 121660594 121660613 CTTAAGATGAGCATCGCTCG 59 121660747 121660765 CCTCAAAGGCTTCAAACGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr442 ENSRNOG00000033543 ENSRNOT00000041926 2 1 1 60 3 72818499 72818519 ACCAGTGACTGTTACCTACTC 59 72818459 72818479 GCTTACAGATTGCCACATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 1 2 2 81 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890243 10890261 GAGCTGTAGTTCCTGTGGG 60 NA Rattus norvegicus 81 Eny2 ENSRNOG00000004681 ENSRNOT00000006402 1 1 1 80 7 83353029 83354282 AGGCACACTGTAAAGAGGT 59 83354326 83354344 TTGGAGTGATTTCAGCCAC 58 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 3 2 2 90 9 42881973 42882294 CTATGAGAGGCTGGTCCTC 59 42882348 42882366 CTTGTATTGCTTCCTGGGC 59 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 1 2 2 80 2 206076488 206076506 AATCTCTTCGAGGCCTCTG 59 206076548 206109304 GTCCACACTTTCACTAGTAGC 59 NA Rattus norvegicus 81 Cep250 ENSRNOG00000019340 ENSRNOT00000055251 3 1 1 80 3 151510128 151510149 GAGAAGAGCCAAGAGTTAATGC 60 151510189 151512032 GAGTTCTGTCACTCGATCCT 59 NA Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 1 2 2 80 2 149925053 149925071 ATGCTGCCGTATGATTCCA 60 149925114 149926806 AGCAAGTCTGTAGTCTGGAG 59 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157,ENSRNOT00000088824 2 2 2 80 9 38342983 38343002 TCCAACTCTACTTCCAGCTC 59 38343043 38344620 CTCAATCGTGAACTGCTTCTC 59 NA Rattus norvegicus 81 Slc48a1 ENSRNOG00000053196 ENSRNOT00000079388 3 1 1 88 7 139277772 139278313 GCACCAGAGTTTCAAAGACC 60 139278364 139278382 AGAGGCTGAGTAGAAAGGC 59 NA Rattus norvegicus 81 Napb ENSRNOG00000004753 ENSRNOT00000006329 2 1 1 80 3 143024413 143025820 AGATCTATGAGCAGGTGGG 58 143024351 143024371 CTGCCTTGAAGAAGTAATCCT 58 NA Rattus norvegicus 81 Eps8l3 ENSRNOG00000048209 ENSRNOT00000074806 2 1 1 80 2 210679462 210679483 CCTGTATGAGTTTGAAGCAAGG 60 210679523 210679720 TTGCTCTGGTCCAGAATCTC 60 NA Rattus norvegicus 81 Plxnb1 ENSRNOG00000029510 ENSRNOT00000043345 3 1 1 80 8 117844926 117844944 AGAACTCCAAGTGGGACTG 59 117844986 117845092 TACAATACCACATGTAGCCCA 59 NA Rattus norvegicus 81 Arhgap40 ENSRNOG00000015359 ENSRNOT00000040516 1 1 1 80 3 155018886 155018904 TGCTTCTACAGAGGACCTG 58 155018948 155021480 TGGGAATTCTGAACCTCGG 59 NA Rattus norvegicus 81 Olr214 ENSRNOG00000048643 ENSRNOT00000067201 1 1 1 60 2 4859122 4859143 TCTCACTTCAGTTATCACTCCC 59 4859162 4859182 TATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emilin2 ENSRNOG00000014837 ENSRNOT00000056272 1 1 1 80 9 119621356 119621374 AAAGACGCCATGAAGACTC 58 119617248 119621312 GCTTGGATCAGTGTCTGTG 59 NA Rattus norvegicus 81 RragB ENSRNOG00000003160 ENSRNOT00000004235 2 1 1 80 X 19104890 19104909 ACTTTGCTGCTTTCATTGAC 58 19103902 19104847 CTGCAGAAGGAATGGATGG 58 NA Rattus norvegicus 81 Ccdc106 ENSRNOG00000015997 ENSRNOT00000021613 3 1 1 80 1 72334533 72335816 AACTTCCCACTTAACAGACAG 58 72334473 72334493 GTCACCAAATGTAGTCAGTCC 59 NA Rattus norvegicus 81 Tbk1 ENSRNOG00000005528 ENSRNOT00000009260 1 1 1 80 7 63661297 63661318 GCTACAAGTCTTGTTGAATTGC 59 63660572 63661257 TTATACGCTAGTCTGCGCTC 60 NA Rattus norvegicus 81 Xirp2 ENSRNOG00000034258 ENSRNOT00000048300 1 1 1 83 3 53642581 53642599 TATGAAACCTCGGATGCAC 58 53642646 53644895 TGGACCAACAGTTTCACTC 58 NA Rattus norvegicus 81 Olr662 ENSRNOG00000048178 ENSRNOT00000047726 2 1 1 60 3 77493468 77493486 GTTTCCTCATGCTGATGGT 58 77493426 77493444 GCACTGTGGTTTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prnp ENSRNOG00000021259 ENSRNOT00000028881 1 1 1 80 3 124518291 124518312 TCAACCCAACTGAAGTATTCTG 58 124518353 124529334 GCCATGATGGCTGATAGTC 58 NA InUTR Rattus norvegicus 81 Mettl6 ENSRNOG00000057372 ENSRNOT00000084645 2 1 1 80 16 7581460 7586020 ACTACGTGAAGCAACATCC 58 7581398 7581419 CAAGAAGGTCATCTCTAGTGAG 58 NA Rattus norvegicus 81 Ankrd12 ENSRNOG00000012733 ENSRNOT00000017613 2 1 1 80 9 113673827 113673845 AAACACTGCCATTCAGTGC 59 113673888 113677040 TGTCATCAGACTGTGAGTCC 59 NA Rattus norvegicus 81 Rev1 ENSRNOG00000018623 ENSRNOT00000067197 1 1 1 80 9 44715499 44715906 CAGCTAGTACAAGTGTGCC 58 44715437 44715458 TCTTCCTCTTGTTTCTCTTGTC 58 NA Rattus norvegicus 81 Srgap1 ENSRNOG00000004603 ENSRNOT00000006180 3 1 1 80 7 64030937 64033462 ACATGACTACAAGGCCTCC 59 64030875 64030894 TAGCATTATACTGGGAGCGG 59 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 2 2 2 80 8 29714512 29853598 CATAGTGCAAGTTCCTCCC 58 29853642 29853660 CATAACAGGGTCACACTGC 59 NA Rattus norvegicus 81 Ooep ENSRNOG00000025957 ENSRNOT00000071049 2 1 1 84 8 85720337 85720552 AGAATCATTGGCTCAGACCA 59 85720272 85720290 CAGAGTTGGCCAAGTTCAC 59 NA Rattus norvegicus 81 Vps16 ENSRNOG00000021222 ENSRNOT00000028821 1 1 1 80 3 122967660 122967680 TACAATCAGGACGACAATCAC 58 122967722 122967993 CCCTTCAATACGCTCTTCC 58 NA Rattus norvegicus 81 Cthrc1 ENSRNOG00000004578 ENSRNOT00000006142 3 1 1 83 7 77974543 77976505 TACTTCCTCCGTGGAAGGA 60 77976552 77976570 TAATCTGAACAGGTGCCGA 59 NA Rattus norvegicus 81 Mmgt1 ENSRNOG00000000881 ENSRNOT00000001179 3 1 1 99 X 158972386 158976431 CCAATAGATATAGTTCTCCAGACAC 59 158972311 158972329 CTGAAGTGGCATCCATGTC 59 NA Rattus norvegicus 81 L3mbtl4 ENSRNOG00000025273 ENSRNOT00000029210 3 1 1 80 9 116975397 116981019 AAGAAGGAGCAGATAGATGGC 60 116981059 116981079 GCCCAGTTTGATTCTCATCAC 60 NA Rattus norvegicus 81 Aldh1a2 ENSRNOG00000055049 ENSRNOT00000079115 3 1 1 80 8 77676615 77676634 CTTCTGAAAGAGGACGTCTG 58 77676675 77678961 GTGATTCCATAGTTGCAAGAG 57 NA Rattus norvegicus 81 Ppp1r16b ENSRNOG00000015614 ENSRNOT00000021133 3 1 1 80 3 155253778 155253796 ACATCCACTGCATGATAGC 58 155253840 155255737 CTCCAGCTATGTGTAGCAG 57 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 3 2 3 113 11 36762882 36770740 GGAAATCTGCAAATGTGAGG 58 36770816 36773594 GAGAAGCAATTTGTGCAGC 58 NA Rattus norvegicus 81 Olr903 ENSRNOG00000047956 ENSRNOT00000050898 3 1 1 60 7 5401510 5401531 GAGAAATCGAACAGTAACAACC 58 5401551 5401570 TTGAAGCCGAATGTCATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ephx3 ENSRNOG00000027319 ENSRNOT00000038961 1 1 1 80 7 14213250 14213363 CGACTTCCAGATTCTGAAATCC 59 14213191 14213210 AACGCTTCAAGTTCACAAGG 59 NA Rattus norvegicus 81 Tmeff1 ENSRNOG00000008034 ENSRNOT00000065775 3 1 1 80 5 64352497 64356246 TGCTACTCTGATAACGGCT 58 64358525 64358544 CTTGGAATGCTTCCTGTGAG 59 NA Rattus norvegicus 81 Dlx2 ENSRNOG00000001519 ENSRNOT00000002076 3 1 1 124 3 58181653 58181671 AACAACGTCTCCTACTCCG 59 58181143 58181565 TCAAGGTCTTCCTTGTCGG 59 NA DesignRelaxed Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 2 2 2 89 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476584 63476602 TGAAGGTGATGCTAAGCAG 58 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888,ENSRNOT00000091626 3 2 2 82 19 19265341 19266947 TGATCGAGATGGTGGTCAG 59 19265277 19265299 GAGACATCTTCAAGTACTCTCCT 59 NA Rattus norvegicus 81 Htatsf1 ENSRNOG00000027761 ENSRNOT00000065636 2 1 1 80 X 159516148 159516166 CGCCACAGAAAGAAATCCC 59 159516208 159516558 CATGGAACCATCCAGATTCAG 59 NA Rattus norvegicus 81 LOC310177 ENSRNOG00000025157 ENSRNOT00000030328 2 1 1 60 2 77784449 77784467 GAGAAGGTGATTTGAGCCA 58 77784407 77784427 TTATGAGAGGGAAGGTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC310177 ENSRNOG00000025157 ENSRNOT00000030328 3 1 1 60 2 77784451 77784469 AGGAGAAGGTGATTTGAGC 57 77784409 77784427 ATGAGAGGGAAGGTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hectd4 ENSRNOG00000001352 ENSRNOT00000001826 1 1 1 80 12 40790711 40791543 CGATCACTACAGACTCAATGAC 59 40790652 40790671 TTGGTGATGAGGATACAGGA 58 NA Rattus norvegicus 81 AABR07067419.1 ENSRNOG00000050591 ENSRNOT00000072642 2 1 1 80 9 44504027 44509173 TTATTGCTCTCATTGGCACTG 59 44503967 44503987 ATAGACGAGAGTGCACATGAG 60 NA Rattus norvegicus 81 Krt19 ENSRNOG00000014233 ENSRNOT00000019133 3 1 1 80 10 88056655 88056675 GATGAGAAGTCAGTATGAGGC 58 88056437 88056615 AGCTCATCAATCTGAGTAAGG 57 NA Rattus norvegicus 81 Maea ENSRNOG00000005397 ENSRNOT00000007181 1 1 1 80 14 82665267 82665758 GCTATGTCTATGGCTACAATTCTC 59 82665210 82665231 GGAAGACTTCTTTGGTTCTTGG 60 NA Rattus norvegicus 81 Amica1 ENSRNOG00000026702 ENSRNOT00000007588 1 1 1 80 8 49386754 49386773 AGAGCACAGAAGAGAAACCT 59 49386814 49388146 ACAGCACGTATTCATTCTCAG 59 NA Rattus norvegicus 81 Alppl2 ENSRNOG00000042889 ENSRNOT00000033487 2 1 1 80 9 94180142 94180611 TCTCTTTGTGGAAGGACTGG 59 94180654 94180672 GGACCGTTGCCATATAGGA 59 NA Rattus norvegicus 81 Vom1r64 ENSRNOG00000048104 ENSRNOT00000074328 2 1 1 60 9 101223508 101223526 CCTCACTCCCAATCAGGAC 60 101223549 101223568 CAGGATAGTATGGGTTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mboat7 ENSRNOG00000054459 ENSRNOT00000078640 2 1 1 80 1 64109646 64113407 TCCTACGTATTGAGGAGTGC 59 64113448 64113468 GAAGCTTAGGTAGTAGCCAGG 60 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 3 2 2 80 1 100835151 100835262 AGCATACACTCCTGGAATACC 59 100835304 100835322 TGGACATCACATCTCCCAG 59 NA Rattus norvegicus 81 Eif2a ENSRNOG00000013393 ENSRNOT00000018022 3 1 1 84 2 148739237 148739259 CCCTAACCTACAACTTTATGACG 59 148739303 148739810 GGAAGGACACCAATTCTGC 59 NA Rattus norvegicus 81 Smarcd2 ENSRNOG00000010557 ENSRNOT00000014508 2 1 1 81 10 94453440 94453459 GCCCAGATGAGTAACTTCCT 59 94453228 94453399 CAATGGTCTCATGGATCTTGAC 59 NA Rattus norvegicus 81 Fcrl6 ENSRNOG00000000055 ENSRNOT00000000059 3 1 1 80 13 90989183 90992333 TCTACTGCTCTGTGTTTCCA 59 90988521 90988541 GTCTCTGAAGAGTTGAGACGA 59 NA Rattus norvegicus 81 Usf2 ENSRNOG00000053725 ENSRNOT00000087381 1 1 1 80 1 89372627 89372646 TATGCAGGAGACCTTCAAGG 59 89372486 89372585 TTCTTCAGCTCCTCGATCTG 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 3 1 2 80 19 19781790 19781812 CTCTTCAAACTCTTCATCAGGTC 59 19779507 19781750 GTTGCGTCAGAATCAACGT 59 NA Rattus norvegicus 81 Ube2g1 ENSRNOG00000010041 ENSRNOT00000013486 3 1 1 104 10 59246994 59247015 CCTATCCATACTGTGGAAACCA 60 59247080 59248244 TTCCCTCCATTCTTTCGCA 59 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348,ENSRNOT00000077275 2 2 2 116 19 22604858 22604880 GAAGATCTGTTTAACCAAGTCCC 60 22603135 22604782 TTTATGGGACTGAGCTGCC 60 NA Rattus norvegicus 81 Sh2d7 ENSRNOG00000023870 ENSRNOT00000029413 2 1 1 92 8 59117398 59119102 GTACAGAGGTACCCACTAGAG 59 59119156 59119174 AGTAGACGATACCACTGGG 58 NA Rattus norvegicus 81 RGD1560171 ENSRNOG00000043487 ENSRNOT00000064172 2 1 1 60 X 143682262 143682280 ATGGAGGTATTGCCAGCAG 60 143682220 143682240 GGGTTCTGATCATCTTCAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap31-1 ENSRNOG00000036838 ENSRNOT00000055286 3 1 1 60 10 87833156 87833174 GCTTCCTACCAACTTGCTG 59 87833198 87833216 CAGGTGGGTTTAATCGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myf6 ENSRNOG00000004878 ENSRNOT00000006523 1 1 1 81 7 49740633 49740942 ACCCAAGCAAGAAATTCTTGAG 60 49740573 49740592 CCTGGAATGATCCGAAACAC 59 NA Rattus norvegicus 81 Olr1667 ENSRNOG00000028439 ENSRNOT00000038213 1 1 1 60 19 24670900 24670919 TGTTCTGAGACCTGCTACAC 60 24670942 24670960 GAGCCAACAAGTCAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 3 2 2 80 8 82331818 82331837 ATAGAAGACGAAGTGGACGA 58 82330352 82331775 ACAATCGTGGTACCTTTCC 58 NA Rattus norvegicus 81 RGD1566136 ENSRNOG00000039203 ENSRNOT00000060001 1 1 1 60 X 113227780 113227798 CATTGACTTCTCCCTCCGT 59 113227738 113227756 CTTCCTCTTCACTCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244,ENSRNOT00000012417 2 2 2 80 2 166406984 166407005 TACAGTGTGCTTTAGAATCCAG 58 166407046 166409978 CAAGCCGAACCTTACTCAG 58 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000047302 ENSRNOT00000061556 2 1 1 80 14 3306878 3306902 GGCATCTATTCTAGAATGCTTAGTC 59 3304391 3306843 ATAATGCAGTTCATGCAGTCAG 60 NA Rattus norvegicus 81 Cst3 ENSRNOG00000005195 ENSRNOT00000007175 2 1 1 81 3 143220858 143220878 CGAACTACATGTACCAAGTCC 59 143219982 143220815 AGAGTGCCTTCCTCATCAG 59 NA Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327 1 1 2 80 20 46507101 46507119 AGGCCTCATCTCAAAGCTG 60 46507163 46518668 GTCAGTTTGAGGGTCTGCT 60 NA InUTR Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 1 2 3 80 14 83344867 83344885 AACCTCAGCGAGTTCTTCC 60 83344929 83345154 TGATGGGCTGATCACACTG 60 NA Rattus norvegicus 81 Rnf113a1 ENSRNOG00000034040 ENSRNOT00000051474 2 1 1 60 X 124517943 124517963 CTAAACTTGGAAAGCATCGAG 57 124517983 124518003 GGGTCTTCTAGGAAATCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0878.5 ENSRNOG00000051174 ENSRNOT00000076574 2 1 1 60 10 87946681 87946700 TCCAATGCATGTGATAAGCC 59 87946640 87946658 GAGGTCTTGTGACACAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453,ENSRNOT00000083915,ENSRNOT00000086967,ENSRNOT00000079684 1 5 5 80 9 28595496 28595515 TTATTTCTCCAACCAGCCCT 59 28590438 28595456 CATACCATAGCTTCACTGAGAG 58 NA Rattus norvegicus 81 Adgre5 ENSRNOG00000004489 ENSRNOT00000006152 2 1 1 80 19 24861353 24861373 TGAGTTTCTCTGTTGAAGTCC 58 24860547 24861312 CGATGAGTTTCTGGATGGTG 59 NA Rattus norvegicus 81 Fam91a1 ENSRNOG00000008271 ENSRNOT00000011797 2 1 1 80 7 98319232 98319662 TATCGCTGGTAAAGAATGCTG 59 98319700 98319722 GGTCCAAGTTTATTACTTGTCCC 60 NA Rattus norvegicus 81 Hipk4 ENSRNOG00000020835 ENSRNOT00000028266 2 1 1 80 1 84328820 84335244 TTCAGGGTAAAGGTGATCGAC 60 84335286 84335304 GGACTGGATGTAAGGCTCC 60 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607,ENSRNOT00000064140 2 2 2 80 8 118287784 118287804 AGCTAGAGATCAAACTTCGAC 58 118287845 118292415 GTCTCTGTTGTTCTAGAGCC 58 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607,ENSRNOT00000064140 3 2 2 80 8 118287783 118287804 AAGCTAGAGATCAAACTTCGAC 58 118287844 118292414 TCTCTGTTGTTCTAGAGCCT 58 NA Rattus norvegicus 81 RGD1564915 ENSRNOG00000054673 ENSRNOT00000056461 2 1 1 60 2 194389999 194390020 TGAGATCCATGACATTCATCTG 58 194390040 194390059 CCCTGTGTAAATGAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Palm3 ENSRNOG00000005729 ENSRNOT00000007535 3 1 1 128 19 25148808 25148826 TACAGCTGTTGCAAAGTGC 59 25149798 25149949 CATCTGTAGGGCCTGTAGG 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 1 2 2 80 10 90207278 90208567 TTCCAGACTGAGATTGTTACC 58 90208609 90208627 AGATTTCATGGTGAGCCAG 58 NA Rattus norvegicus 81 Scn11a ENSRNOG00000032884 ENSRNOT00000034025 3 1 1 80 8 128467531 128467549 TTGAAGTCCTTCCGGACTC 59 128467062 128467489 GTAGACGACAACCTTCATTCC 59 NA Rattus norvegicus 81 Sbk2 ENSRNOG00000038625 ENSRNOT00000058956 2 1 1 80 1 72425915 72426964 GGCCCAATTTGTAAATGCC 58 72427008 72427026 CTTCATCACCTCCATCCTC 57 NA InUTR Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223,ENSRNOT00000083659 1 2 2 80 8 32538729 32539765 TGCTTCCAGAAGTGATCTCC 60 32539807 32539826 GATGGTGAATGGTGCTTGTG 60 NA Rattus norvegicus 81 Gpsm2 ENSRNOG00000012149 ENSRNOT00000066178 1 1 1 80 2 211513449 211513470 ACGCTTACTTCTACTTACACGA 59 211512972 211513408 CTCCAATAGTCCTCGCCAG 60 NA Rattus norvegicus 81 Npas2 ENSRNOG00000013408 ENSRNOT00000059571 2 1 1 80 9 46045530 46045550 TACTACATCACCTACCACCAG 58 46045592 46048035 GACATCTGCGTAACTGACC 58 NA Rattus norvegicus 81 Slc4a11 ENSRNOG00000021234 ENSRNOT00000028839 1 1 1 80 3 123231503 123231521 TCAGATACCATCCAGGGAG 58 123230615 123231459 CATGGTACAGACGATGCAG 58 NA Rattus norvegicus 81 Smptb ENSRNOG00000028033 ENSRNOT00000014611 2 1 1 60 X 17486430 17486450 CTCCAACCTACTGTTTCTGAG 58 17486390 17486408 CTCCTCTGTGCTCATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3galnt1 ENSRNOG00000012019 ENSRNOT00000016012 3 1 1 83 2 166228471 166231375 CTGTGGTTAAGGACCTGTG 58 166228406 166228424 CATCCTATTGGGAATGGCA 57 NA InUTR Rattus norvegicus 81 LOC501033 ENSRNOG00000013399 ENSRNOT00000018553 3 1 1 94 8 96977749 96982850 GAAATCAAAGGAGGCAGACAG 59 96977675 96977693 TGAACACCTGTTCCACCAG 60 NA Rattus norvegicus 81 RGD1563606 ENSRNOG00000002975 ENSRNOT00000003981 2 1 1 60 X 16946427 16946446 CCTACATCTACGAGAAGCCT 58 16946469 16946487 TCTTCAGTTTGCACCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fat4 ENSRNOG00000028335 ENSRNOT00000038703 2 1 1 80 2 125835687 125842887 CTGTCATCAGTTACAGTATCATCG 59 125842924 125842944 GTGCACTAGTGATGATCTGTC 59 NA Rattus norvegicus 81 Syce2 ENSRNOG00000003279 ENSRNOT00000004404 1 1 1 86 19 25999951 25999970 GTCATCTGGAAATGGAGCTC 59 26000019 26001063 AAGTGGGAACCTCAGACTG 59 NA Rattus norvegicus 81 AABR07054708.1 ENSRNOG00000050969 ENSRNOT00000075542 2 1 1 103 3 167270462 167270480 CTTCACTCAGGAAGAGTGG 57 167270062 167270398 AAATGTATCCTATAGCGCTGAG 58 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 2 2 2 80 3 35791328 35791349 AACTGAACATGACATGACTGTC 59 35784858 35791290 GCACCATTAATGAACTTCTCCA 59 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 3 2 2 81 3 35784858 35791290 TGGAGAAGTTCATTAATGGTGC 59 35784798 35784816 GACGGGTCAATGAAGTCAG 58 NA Rattus norvegicus 81 Rad17 ENSRNOG00000018353 ENSRNOT00000024801 3 1 1 81 2 30659816 30662965 CTACAAAGGTAACAGACTGGG 58 30659755 30659773 GATGAAACGGTGATGGTGG 59 NA Rattus norvegicus 81 Tmem45b ENSRNOG00000008515 ENSRNOT00000011329 2 1 1 80 8 32567999 32568019 CTCCGAGATAACATTGTGCTG 59 32567477 32567958 AAATCCAATCTGCCAGAACC 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 3 2 2 89 9 45536282 45538227 GAAGTCATGAAGCCAACTGG 59 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 1 2 2 80 8 118830265 118834405 CAAGGATCTTCCTTCGAACAC 59 118834446 118834465 TTCACCCGAGCTTTAAACTC 58 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 1 2 2 87 10 89168394 89168545 ATTAGCAGGTATTACAGCAACC 59 89168593 89168611 TTTCTGCCAAGGGATTTGG 58 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 2 2 2 88 10 89168394 89168545 ATTAGCAGGTATTACAGCAACC 59 89168593 89168612 CTTTCTGCCAAGGGATTTGG 60 NA Rattus norvegicus 81 Sybu ENSRNOG00000004200 ENSRNOT00000005584 3 1 1 81 7 83606198 83606217 CCTTCTTCTCCAAGTAGCAG 58 83604125 83606155 TATATCGTCCAGACCTCCTC 58 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 3 1 2 282 14 83560719 83561583 CTATGGATCTGGAGGCTGC 60 83562962 83562981 CACCTGTGTCTCTTTGTCAC 59 NA DesignRelaxed Rattus norvegicus 81 Tchp ENSRNOG00000001191 ENSRNOT00000001577 3 1 1 84 12 47641222 47642452 TGATGAGCGAGGTTCTGAC 60 47641156 47641175 TTTAGGGTCTCCTCTTGTGC 60 NA Rattus norvegicus 81 Arid1a ENSRNOG00000006137 ENSRNOT00000009173 3 1 1 80 5 151946596 151947516 TATGCACAGCAGATTCCAC 58 151946534 151946554 CTGGTTATAGTACGGAGTCTG 57 NA Rattus norvegicus 81 RGD1560398 ENSRNOG00000037566 ENSRNOT00000056932 1 1 1 82 12 47552060 47555514 GAACCTGGTGTTGATGGGA 60 47555559 47555578 GAATGGGCTTGTAGACACAG 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000027641,ENSRNOT00000076499,ENSRNOT00000076592 3 3 3 139 1 167337326 167347638 GGTCACTACTTCCAGTGGG 59 167337205 167337225 TATAGCAGATGAGAAGGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grb14 ENSRNOG00000052498 ENSRNOT00000089243 3 1 1 80 3 50978194 50978214 CCTGAAGAACCACTATGTCGA 60 50963218 50978152 TCCACTGTCCTTTCTACGC 59 NA Rattus norvegicus 81 Fam222a ENSRNOG00000001198 ENSRNOT00000001588 2 1 1 67 12 47767028 47767046 TGACCTGTCCAAGCAAGAG 60 47749410 47749428 GGAGGAAGGCATAGAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_1_1736.2 ENSRNOG00000051224 ENSRNOT00000077009 3 1 1 60 1 167355694 167355713 GACTAAGCGACCTGAATGGA 60 167355653 167355674 AGACTAGCATGATTGGTATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irak3 ENSRNOG00000004226 ENSRNOT00000005686 2 1 1 80 7 64927611 64927716 AACATGTTCAGCTGAGGGA 59 64927549 64927567 TCCTGTCCAAGAACGAGAG 59 NA Rattus norvegicus 81 Nkx1-1 ENSRNOG00000005113 ENSRNOT00000073177 3 1 1 191 14 82603954 82603973 AGTTCAACAGTAGGAGACGC 60 82604127 82606174 TACTTGTAGGCTCAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr101 ENSRNOG00000061381 ENSRNOT00000086124 2 1 1 60 1 168546853 168546871 TGGCAAGAATGTGTCTCCA 59 168546895 168546913 GGGCACTAGAAGGTACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wwc3 ENSRNOG00000024250 ENSRNOT00000071173 3 1 1 80 X 24984188 24984641 GGAGAGGCAGACAAGACAG 60 24984684 24984703 TCTTTGGAGGCCTTCTTCAG 60 NA Rattus norvegicus 81 Olr94 ENSRNOG00000036811 ENSRNOT00000055227 3 1 1 60 1 168471027 168471046 CTTTCTGCCTTGTCTACCTG 58 168470986 168471006 CTGACGATAAAGAGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1471 ENSRNOG00000061453 ENSRNOT00000072328 2 1 1 80 10 60020298 60020316 ATGGCTATGATGTGCACAG 58 60020234 60020254 TGCCTCTTTCATGTCTCTG 57 NA Rattus norvegicus 81 Myrip ENSRNOG00000018797 ENSRNOT00000025460 2 1 1 80 8 129130741 129130759 AGAACTGGCAGATCTGGAG 59 129130802 129132829 TCGATGTCAGAGATCTGGAG 59 NA Rattus norvegicus 81 Olr113 ENSRNOG00000015940 ENSRNOT00000021334 2 1 1 60 1 168703013 168703032 TACTTCTGGCTATCTGTCCC 58 168702972 168702990 TGCAATTTCCCAGGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbl1xr1 ENSRNOG00000011216 ENSRNOT00000015573 1 1 1 80 2 107332523 107332543 GCACTCATCTCTATCATCCAG 58 107332583 107333842 ATCAAATAAGGTGCCATCCTC 58 NA Rattus norvegicus 81 Gstp1 ENSRNOG00000018237 ENSRNOT00000024601 3 1 1 80 1 219293399 219293419 CAAGTTTGAAGATGGAGACCT 58 219293011 219293358 CCATAAAGCCCTAAAGAGCG 59 NA Rattus norvegicus 81 Eif2d ENSRNOG00000004910 ENSRNOT00000006768 1 1 1 80 13 47945551 47945569 AGGTCCGAAGGATCATCAC 59 47945611 47946856 GATCCAACTTCACCAGATTCC 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 2 3 3 80 X 23101787 23101806 CTACCCTGAGGAATTTGCAC 59 23097041 23101745 ACCAGATCCTCATAGGACTC 58 NA Rattus norvegicus 81 Myl4 ENSRNOG00000050675 ENSRNOT00000072480 3 1 1 102 10 92635218 92635513 CAAGCCTGAAGAGATGAATTCC 60 92635576 92635594 GAAGTCCTCATAGGTGCCC 60 NA Rattus norvegicus 81 Med23 ENSRNOG00000013422 ENSRNOT00000032424 1 1 1 80 1 21582171 21583178 GGAGGAGTGGATTATAAGGGTG 60 21582112 21582133 GCTTACAGTATTCGGGATTGTC 59 NA Rattus norvegicus 81 Mdk ENSRNOG00000017560 ENSRNOT00000033978 2 1 1 109 3 80842059 80842077 CAAGGGACCCTGAAGAAGG 60 80841285 80841987 TTTCCTTTCTTGGCTTTGGC 60 NA Rattus norvegicus 81 Mdk ENSRNOG00000017560 ENSRNOT00000033978 3 1 1 164 3 80842113 80842133 AATACAAGTTTGAGAGCTGGG 58 80841286 80841987 TTCCTTTCTTGGCTTTGGC 59 NA Rattus norvegicus 81 Olr137 ENSRNOG00000049544 ENSRNOT00000052078 3 1 1 60 1 169153537 169153555 CTCACTCTCACCACACTCC 59 169153577 169153597 TGATTTCCCGAATGTTGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhdds ENSRNOG00000014665 ENSRNOT00000020051 2 1 1 80 5 152220500 152220518 GTCACGAGATCACCAATGC 59 152213656 152220456 ACTCGGAAACATCACTGGG 60 NA Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 3 1 1 71 14 72889355 72889373 TGCTTCGCTTTGTGAAAGG 59 72889408 72889701 TGCATAGGACTGTGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Lrfn4 ENSRNOG00000019356 ENSRNOT00000026169 2 1 1 129 1 219851464 219851482 AAGTGACAGAGGTGACTGC 60 219850877 219851373 GGTACAATCCGGTAGATGAGG 60 NA Rattus norvegicus 81 RGD1562433 ENSRNOG00000036807 ENSRNOT00000055216 2 1 1 60 1 169320083 169320101 TACTACCACCATTCCAGCC 59 169320041 169320059 TGTACTGACCTCTTGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000082233,ENSRNOT00000080174 3 3 5 83 20 4808255 4808274 GTGAAACTGAAGGACAACGA 59 4807035 4808210 CACAAAGATCACAACCTGGT 58 NA Rattus norvegicus 81 Cwc27 ENSRNOG00000013252 ENSRNOT00000017832,ENSRNOT00000090060 1 2 2 80 2 34816952 34816972 TTAAAGCGGGAACTCTTAGCA 60 34752383 34816912 AGCTTCTTCCTCTTCACTTCC 60 NA Rattus norvegicus 81 Trappc2 ENSRNOG00000042276 ENSRNOT00000068113 1 1 1 80 X 29556542 29556561 GTTGGCCACCATGATAATCC 59 29553975 29556501 ATGACGGTGATCATCTTTGGA 60 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213,ENSRNOT00000084311 2 2 2 80 10 89687232 89688907 TACGACTCAGATGTCCCTG 58 89687170 89687188 CACTCCATCACCTGAAGAG 57 NA Rattus norvegicus 81 Svs6 ENSRNOG00000026346 ENSRNOT00000018510 3 1 1 81 3 160696419 160696437 AAATTCTCACAGTCGGCTG 58 160696573 160696592 AGACATCCTCATGGATGACG 59 NA DesignNoJunction Rattus norvegicus 81 Olr1067 ENSRNOG00000049897 ENSRNOT00000049954 1 1 1 60 7 9393216 9393234 TTCTGCTGGGATTCTGGAC 59 9393174 9393195 AGCAAGAACAGTAAGAACAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem167b ENSRNOG00000042160 ENSRNOT00000023728 2 1 1 69 2 211349065 211350216 TTACAAAGCTGCTGTGATTGG 60 211349016 211349034 AAAGGCCATTACGATGCAG 59 NA DesignRelaxed Rattus norvegicus 81 Olr727 ENSRNOG00000047981 ENSRNOT00000043370 2 1 1 71 3 78852654 78852673 ATGACCATATCCACAAAGCA 57 78852796 78852814 GATGAGCATGTTACCTGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Erich3 ENSRNOG00000009533 ENSRNOT00000012638 3 1 1 80 2 261017376 261017394 AATGGAAGGGCAGGATAGG 59 261017436 261022738 CGAAATCTTCTTCGTAGTCGT 58 NA Rattus norvegicus 81 Olr57 ENSRNOG00000015407 ENSRNOT00000020655 1 1 1 60 1 167937223 167937241 CATGCTCTCCTTCACAGAC 58 167937265 167937283 GATGCCCAACACAGTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldoc1 ENSRNOG00000003409 ENSRNOT00000004529 1 1 1 60 X 144807742 144807763 TTATCGGGCCTTTGTTAATGAG 59 144807783 144807802 ATCTTCATCGTCGGTATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 1 3 3 80 9 51469351 51469370 TTGGCAGTACTGAAGTGGAG 60 51469412 51479678 TGTGTCTTGCAAACTTCAGC 60 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 2 2 2 80 2 38983671 38983689 ACTCTCATGGACAGTCTGC 59 38982034 38983629 CAGTGTCATTCGCATAACCTG 60 NA Rattus norvegicus 81 Msx1 ENSRNOG00000006876 ENSRNOT00000009101 3 1 1 183 14 77712766 77712784 GGAGAAGCTAGATCGGACC 59 77714970 77714988 AGACAGGTACTGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000084971 1 1 2 135 20 4698678 4698696 CTCACACTCTGCTTCTGCT 60 4698358 4698376 TAGCCGACAGAGATGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp12 ENSRNOG00000006958 ENSRNOT00000038577 3 1 1 60 12 13372764 13372783 GCCTACGAGTGTTATGAGTG 58 13372723 13372741 GGTGGATAGTGAGGTACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa1l ENSRNOG00000047966 ENSRNOT00000074223 3 1 1 255 20 4959428 4962712 CGTAGAGATTCCAGGCCTC 59 4962931 4962949 CAATTAGACGTTTGGCGTC 57 NA DesignRelaxed, InUTR Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 2 2 2 80 16 56326746 56326767 TTTAAGGAGGAACAACTTGGAG 58 56326802 56350386 GTCATAGCAAAGACTATACACAGAG 59 NA Rattus norvegicus 81 Tsr1 ENSRNOG00000002980 ENSRNOT00000003992 3 1 1 80 10 61749838 61749856 AGAGGTTATTCCAGACCCA 57 61749900 61750383 TTCAGTGAGTCATTTGCCT 57 NA Rattus norvegicus 81 S1pr1 ENSRNOG00000013683 ENSRNOT00000018318 2 1 1 60 2 218656770 218656788 CATCGGAGTGGAGAAGGAC 60 218656728 218656748 GCAGATGAGAATGAACACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000001523 2 1 2 80 12 46872920 46872938 GGTTGACTTTGTGCACCAG 60 46872981 46873333 TAACCGGAGTATACCTGCAG 59 NA Rattus norvegicus 81 Ssh1 ENSRNOG00000000695 ENSRNOT00000044751 2 1 1 80 12 48431730 48433268 ATGTGACTTCTAAGGAAATCCG 58 48433306 48433327 TATCGATGAACTCCTTGAACTC 58 NA Rattus norvegicus 81 Olr165 ENSRNOG00000048219 ENSRNOT00000072602 1 1 1 60 1 169769641 169769659 ACCATACCTACTGTGACCA 57 169769599 169769617 TTCACCTTGACATTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561453 ENSRNOG00000046395 ENSRNOT00000049732 2 1 1 60 1 240777142 240777160 GCCCATGTATGTCAAGCTG 59 240777181 240777202 CTTTATCAGGTTGATCTGGTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo11 ENSRNOG00000039717 ENSRNOT00000072212 3 1 1 80 2 38013489 38014286 TGTTATTGAAGGCGAGAGGT 59 38013428 38013449 CTGGCATTCTGTAGTAAGACTC 58 NA Rattus norvegicus 81 Ss18l2 ENSRNOG00000047853 ENSRNOT00000073376 2 1 1 81 8 130350834 130350852 GAGAATGACCAGCTGATCC 58 130350897 130352778 ACACATGCTGATACTGGAC 57 NA Rattus norvegicus 81 Cox5a ENSRNOG00000018816 ENSRNOT00000025525 1 1 1 81 8 62306298 62307467 TGCGTAAAGGGATGAATACAC 59 62307510 62307528 CTACATGCCCTCAAAGCAG 59 NA Rattus norvegicus 81 St6gal2 ENSRNOG00000046515 ENSRNOT00000072796,ENSRNOT00000079488 2 2 2 81 9 7027016 7029226 GCCAATCTTAACCTGTGGT 58 7029271 7029289 GAGTTGGGTATTTCAGGCG 59 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 2 2 2 80 8 61768825 61769541 ATCTCAGAGCATTGATACTCCA 59 61769582 61769600 AAGCCCATGATCAGGTCAG 60 NA Rattus norvegicus 81 Esyt1 ENSRNOG00000060753 ENSRNOT00000082107 2 1 1 80 7 2925541 2925632 CAATGAGCGGTTTGAATGG 58 2925479 2925499 GAGGAGTTTGACTTCACAGAG 58 NA Rattus norvegicus 81 Sf3b1 ENSRNOG00000013516 ENSRNOT00000019126 1 1 1 80 9 61596378 61597910 AATGGATAGGGACCTTGTACAC 60 61596319 61596339 CAGCCAAATCCATAAACACCA 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000090090 3 1 5 60 20 4420595 4420613 TCTCCCTCCTCCCTTTACC 60 4420636 4420655 GCTGAGACTTCTGGAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000012342 2 1 2 82 5 154267361 154267522 TGTCTCTGGCAGATTCAGC 60 154267567 154267586 TCTTCTCACTGAACACCACC 60 NA Rattus norvegicus 81 AC108546.1 ENSRNOG00000053404 ENSRNOT00000080448 2 1 1 84 8 62215271 62215290 ATCCCTGCTCAAGATCACAC 60 62214182 62215225 TGAGAAGAATCTGCCCTGTG 60 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 2 2 2 80 10 98342514 98344718 GCATTGACGACTATAAGAACAGAG 60 98342457 98342477 CATGACCAAACCAGTATGCAG 60 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 1 2 2 80 14 86146443 86146640 AATTCAAGGAAGCCTTCAGC 59 86146382 86146402 GGGAATAAGTCTCCTTCAGGT 59 NA Rattus norvegicus 81 Zfp524 ENSRNOG00000016565 ENSRNOT00000022193 2 1 1 60 1 72376508 72376529 CTTGTTTCTGGTGGTATTCCTG 59 72376469 72376487 CCAGAGGTTTAGGTCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cspg4 ENSRNOG00000017208 ENSRNOT00000023326 2 1 1 82 8 61532608 61550892 GATCTACAGCTCCTGCCTC 59 61550935 61550956 CAGTAAGTCTACTCTGGTCAGG 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 2 3 3 80 2 216341132 216341258 CGTCAAATCAGGAACATGGT 59 216341071 216341089 GTTGCTGCCATTATCCCAC 59 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 1 2 2 80 8 129206271 129206289 GCATCGTGGTACTTGTGAC 59 129206333 129218203 CGATTCCATACTTCAGCCC 58 NA Rattus norvegicus 81 Zfp865 ENSRNOG00000016279 ENSRNOT00000021917 1 1 1 148 1 72356902 72356920 TTAGGTACAAGATGGCCGC 60 72359147 72359165 CTGGATCTCGATGAGGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911874 ENSRNOG00000049995 ENSRNOT00000073557 3 1 1 80 9 52822206 52822227 AGATGAGTACTAAATCCGTCCC 59 52820988 52822166 ACCAAAGACCGATTCTAGCA 59 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 3 2 2 81 5 154312108 154312226 TTCCATTCGTGGAGAAGAC 57 154312271 154312289 CTCCTCAAACTCCACAGAG 57 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 2 6 8 103 20 4363557 4363723 GGAAACTGAACACAGGAAGG 59 4363788 4363807 AAGGAGGAGTGAACCATTGG 60 NA Rattus norvegicus 81 Olr339 ENSRNOG00000012838 ENSRNOT00000017126 1 1 1 60 1 229723149 229723172 TGTAGACCTCTTCATTATACCACC 60 229723190 229723209 CAATGGTCAGGATGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eps8l1 ENSRNOG00000027942 ENSRNOT00000032306 3 1 1 80 1 72929988 72930011 GTACCCTATAATATCCTGACACCC 60 72929666 72929952 GCTAGTCTCTAGGTTTATTGCG 59 NA Rattus norvegicus 81 Wnt8b ENSRNOG00000013817 ENSRNOT00000018815 2 1 1 126 1 264260530 264261244 TGGACCAAAGGCTTACCTG 60 264261334 264261352 GGACAGCTGTAAGGCTCTC 60 NA Rattus norvegicus 81 Twf2 ENSRNOG00000048915 ENSRNOT00000074683 2 1 1 82 8 114908553 114908571 TCTACTCCAGCTGCAAGAG 59 114908615 114908995 GCCGATCTCAATCTTCTTAGC 59 NA Rattus norvegicus 81 Ccdc13 ENSRNOG00000025643 ENSRNOT00000075439 2 1 1 81 8 130457573 130457592 AACCTGAAGATGAGTGACCT 58 130456535 130457529 CATTGGCCAGAACCTTCTG 59 NA Rattus norvegicus 81 Vom1r109 ENSRNOG00000047242 ENSRNOT00000070823 3 1 1 60 1 68239398 68239422 TACTACCTCATCCTTTACTACAGAC 59 68239437 68239458 GCATAAGAATCAAATCTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 3 1 8 63 20 4389044 4389478 TCATCTGCTACTCCCAGGA 59 4388999 4389017 TGGCTTCTACAGTCCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Ankrd28 ENSRNOG00000019697 ENSRNOT00000026680 1 1 1 80 16 7866220 7866238 AATGTGAACGTGTCAGACC 58 7864601 7866176 TAGCTTGACCATCTCACCA 58 NA Rattus norvegicus 81 Ido1 ENSRNOG00000031189 ENSRNOT00000051363 2 1 1 80 16 72224933 72225650 CCTGCAATCAAAGCAATTCC 58 72225693 72225711 ACTACACAGTGCCTTCTCC 59 NA Rattus norvegicus 81 LOC685629 ENSRNOG00000048679 ENSRNOT00000072045 2 1 1 97 16 12174787 12174805 ACACCTTCTATGTCCCTGC 59 12174866 12175642 TTGGACAGCCGTATCACTC 60 NA Rattus norvegicus 81 Ccdc12 ENSRNOG00000020946 ENSRNOT00000028426 3 1 1 80 8 118973938 118973956 CGGAACTATGTCCCAGAGG 59 118974000 118975338 CACCTTCTCTTCCACTGCA 60 NA Rattus norvegicus 81 Dph7 ENSRNOG00000008102 ENSRNOT00000046898 2 1 1 80 3 2171592 2173322 TGGAATGTGAGAAGAACAGC 58 2173363 2173383 CCAGTGATAAGGATAGACAGC 58 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595,ENSRNOT00000073847 1 2 2 80 2 49126685 49128077 CCAGCCTCCTACAAATGGT 59 49126522 49126540 TGCTCAGCAAACTCAATGG 59 NA Rattus norvegicus 81 Cplx3 ENSRNOG00000019317 ENSRNOT00000026165 2 1 1 80 8 62384505 62385729 CTGGTGGAGGAGAAGATGG 59 62384443 62384461 CCTGAAGTGACTCCGTAGC 60 NA Rattus norvegicus 81 Frmpd1 ENSRNOG00000012546 ENSRNOT00000016839 2 1 1 80 5 60825635 60827484 TGCTACTCTGATGCTACAGG 59 60827525 60827545 TTGATGATCTGGCTAATCCCA 59 NA Rattus norvegicus 81 Fgf10 ENSRNOG00000012278 ENSRNOT00000016485 2 1 1 86 2 51673816 51740169 TGTCCGTACAGTATCCTAGAG 58 51740214 51740235 CATGGCTAAGTAATAGTTGCTG 57 NA Rattus norvegicus 81 Fgf10 ENSRNOG00000012278 ENSRNOT00000016485 3 1 1 86 2 51673749 51673770 CTCCTTCACCAAGTACTTTCTC 59 51673815 51740168 TCTAGGATACTGTACGGACAG 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000086791 1 1 8 80 20 4458743 4458763 GTACAAGCTGCTACTCTATGG 58 4458805 4459671 TCTCTAGGGTCAGTCACAG 57 NA Rattus norvegicus 81 Rbm6 ENSRNOG00000018333 ENSRNOT00000024939 2 1 1 80 8 116536744 116536762 CTACTGGCTGGAGGAAAGG 60 116535631 116536700 TCATCCGCCCTTCAATCTC 60 NA Rattus norvegicus 81 Neil1 ENSRNOG00000018577 ENSRNOT00000058645 3 1 1 113 8 61819652 61819760 TCTTGTATCGGCTGAAGATCC 60 61819329 61819347 GTTTGGCCTTGACCTTCTG 59 NA Rattus norvegicus 81 Cnn3 ENSRNOG00000011559 ENSRNOT00000015579 3 1 1 80 2 225005341 225028165 CGAGGTCAAGAACAAGATCG 59 225028206 225028226 CCTGTCACCTCTTCTATCCAG 59 NA Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 3 2 2 81 2 34110113 34110131 GACATGATGAAGTGCGGAC 59 34100635 34110069 AATCGTGCAAAGTCAGTCTG 59 NA Rattus norvegicus 81 Olr1334 ENSRNOG00000058082 ENSRNOT00000088877 3 1 1 60 8 43848142 43848160 GACACCACTACTCAACCCT 59 43848100 43848119 GAGTGCTTTCTTCACCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1qa ENSRNOG00000012807 ENSRNOT00000017385 1 1 1 60 5 155264102 155264120 CCATCAGCAAAGGACTGGA 60 155263151 155264078 TCCATGATGTTCCTGCCTC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 C1qa ENSRNOG00000012807 ENSRNOT00000017385 3 1 1 62 5 155264102 155264120 CCATCAGCAAAGGACTGGA 60 155263149 155264076 TCTCCATGATGTTCCTGCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Zfp445 ENSRNOG00000025554 ENSRNOT00000034690 3 1 1 80 8 131898649 131898667 GAGTGGTGCAGAAGTTGTG 59 131893000 131898606 GTAAGGCATGAGTCCTTCAG 58 NA Rattus norvegicus 81 Skiv2l2 ENSRNOG00000010125 ENSRNOT00000060695 2 1 1 80 2 44738724 44742794 TGAGATAAGCAGTGCTGAC 57 44738662 44738680 GCCTGTTCTGAAGAAAGGT 58 NA Rattus norvegicus 81 Ubxn11 ENSRNOG00000015476 ENSRNOT00000021342 3 1 1 80 5 152338860 152338878 GGAAGGTGCCCTTAGAGTC 60 152339617 152340066 TGTCCACCTCATCTTCATCTC 59 NA Rattus norvegicus 81 RGD1560633 ENSRNOG00000031736 ENSRNOT00000041555 1 1 1 60 8 55275910 55275931 AATATCATCCTGGTTACTTCGG 58 55275871 55275889 TGGTTCCTCTTCAAGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bend3 ENSRNOG00000046505 ENSRNOT00000071494 3 1 1 133 20 48249913 48249931 CTCCACAATTCCAGCAAGC 60 48265299 48265317 CAGGGTGAACTGTTCTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485,ENSRNOT00000064466 3 2 2 83 20 50564002 50564023 GCTTCATCTCCATGATAAGTCG 59 50517995 50563961 CCATGAATAGTTTGCTTTGGTG 59 NA Rattus norvegicus 81 Hace1 ENSRNOG00000000327 ENSRNOT00000000365 3 1 1 80 20 50770878 50771177 GAAGATCCAGTTATTCAGTGGT 58 50771216 50771236 CACGAACTGTAAGAGAAGGAC 59 NA Rattus norvegicus 81 RGD1564138 ENSRNOG00000037172 ENSRNOT00000050117 3 1 1 60 8 119214856 119214875 AAGATTCGAAGCTACATGGC 59 119214898 119214916 TTTGAACCTTGGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 1 2 2 80 3 133122591 133122611 CAAGGAGTTAGAAACACAGCA 59 133113987 133122549 GAATGATAGCCTGCACCTG 58 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 3 2 2 80 3 133078944 133078962 AGAGATCGAATGTGATGCC 57 133068830 133078901 TTCTTGATTCCACTCAGTGC 58 NA Rattus norvegicus 81 Kdm1a ENSRNOG00000022372 ENSRNOT00000055992,ENSRNOT00000080881 1 2 2 80 5 154931752 154932854 AGAAGCACCTTATAACAGTGAC 58 154931693 154931711 CCGAAGTTGATAAGACCGT 57 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000043480 ENSRNOT00000067683 1 1 1 60 8 115512182 115512203 CAAGCCAGTTCATCTTAAATCG 58 115512223 115512242 TCTGAGAAGACAGGTTTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm8a1 ENSRNOG00000043480 ENSRNOT00000067683 2 1 1 60 8 115512182 115512203 CAAGCCAGTTCATCTTAAATCG 58 115512222 115512242 TCTGAGAAGACAGGTTTGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1709 ENSRNOG00000050354 ENSRNOT00000044130 2 1 1 60 20 1185476 1185496 TTATGTAGCTGTTTGCCTTCC 59 1185518 1185536 CCTACACTTTCTGGGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 1 2 2 91 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697028 74697046 AGTGGAAACCCACTGACAC 60 NA Rattus norvegicus 81 Pard6b ENSRNOG00000010883 ENSRNOT00000014568 3 1 1 85 3 164828333 164828354 AATGATGACAACTACCACAAGG 59 164828400 164840642 CTGTAGTCGGCTTCTTCCT 59 NA Rattus norvegicus 81 Olr1690 ENSRNOG00000046933 ENSRNOT00000049250 3 1 1 60 20 775981 776002 GTTATACACAGCAAGTACACTC 57 775942 775963 GAACTGGTGAATTATCTTGTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cer1 ENSRNOG00000010518 ENSRNOT00000014008 1 1 1 83 5 101005835 101005853 TACACTGGGAAACCTGCAG 60 101004119 101004137 GGTTGTTCTGGACAGTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 3 1 2 91 5 156682867 156683579 AATATCTCGGCAGGATCCTC 59 156682795 156682813 TACTCTCCATCCAAAGCCA 58 NA Rattus norvegicus 81 Rhd ENSRNOG00000017130 ENSRNOT00000023187 3 1 1 80 5 153197616 153207689 GGCGATCTATCAAGTCATCC 58 153207732 153207750 TGTCTCCGAAAGGATGAGG 59 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680,ENSRNOT00000091132 2 2 2 80 5 164687451 164688903 AAGTTCAGCAAGAATTGTCTGG 60 164687392 164687412 TTTCCTGCTCCAGATTATCCC 60 NA Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 2 2 2 80 16 62026499 62056606 AAGAATGCTTTGAACGGCA 59 62056650 62056668 CTTCGTGTTTGCCTTAGCA 59 NA Rattus norvegicus 81 Thap1 ENSRNOG00000056956 ENSRNOT00000080051 2 1 2 80 16 70663162 70663182 AACAACAAGCTACTGAAGGAG 58 70661798 70663122 TTCCAGTTCTTCCTTCTTCTC 57 NA Rattus norvegicus 81 Slc31a1 ENSRNOG00000014475 ENSRNOT00000019544 3 1 1 193 5 78245543 78245562 ATGGAGATGCATCATATGGG 57 78246115 78247630 AAAGCTCCAGCCATTTCTC 58 NA Rattus norvegicus 81 AC111257.2 ENSRNOG00000052837 ENSRNOT00000091296 1 1 1 80 16 81010119 81011119 TAACTACGATGAAGAAGGAGCA 59 81010060 81010078 CTCCCTCCTGTGACTACTG 59 NA Rattus norvegicus 81 Frmd3 ENSRNOG00000006503 ENSRNOT00000065792 2 1 1 80 5 90094335 90094356 TGGTAAAGTTGCTAAAGAGGTG 59 90080230 90094296 GTAATGTTGACTCTGTGCACC 60 NA Rattus norvegicus 81 C1qb ENSRNOG00000012749 ENSRNOT00000017060 3 1 1 60 5 155248631 155251860 GATTCCATACACAGGAGGC 58 155248589 155248609 AAGATCTCACTCCACTGTGTC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Tm2d1 ENSRNOG00000007527 ENSRNOT00000009897 2 1 1 80 5 116999733 117008365 ATTTCAATGCAGATCGTCGG 59 116999672 116999690 GCTGAGTCTCGTGAGTCTG 60 NA Rattus norvegicus 81 Bag4 ENSRNOG00000042560 ENSRNOT00000066901 3 1 1 80 16 71062335 71062398 TAAATCACTTGCCTGGCTC 58 71072032 71072053 CCATTTGCGTAAGAATTCAGAC 58 NA Rattus norvegicus 81 Ube2l6 ENSRNOG00000030467 ENSRNOT00000044319 3 1 1 81 3 72202121 72205563 AAGGCCTATCAAGTCTTGGAG 60 72205606 72205624 CAGCTAGTTCCAAACGCAC 60 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419,ENSRNOT00000087254 1 2 2 83 5 77132144 77137512 CTGCTAAGGACCTGAATGC 58 77137559 77137577 CTCCAGTGACATGCTTGAC 59 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 1 2 2 80 5 152104584 152104608 GCTCTATCTTATTCTGGACTTTCTG 59 152102912 152104550 TCCTCCTCTGTAAACATAACCTC 59 NA Rattus norvegicus 81 Ank1 ENSRNOG00000018241 ENSRNOT00000064070 3 1 1 80 16 73777045 73777065 CACTACGGAAACATCAAGCTG 60 73776779 73777003 GCTGTACCCTAGCTTGGTC 60 NA Rattus norvegicus 81 Adam18 ENSRNOG00000017683 ENSRNOT00000023805 1 1 1 80 16 72196504 72196525 GCCTCCAGATTGTAACTTACAG 59 72196566 72201102 AAAGCCGAATCAGTTCGGA 60 NA Rattus norvegicus 81 Nipsnap3b ENSRNOG00000010332 ENSRNOT00000013759 2 1 1 80 5 69844213 69844233 ATGGATGAACAAGAGGTTGAG 58 69844273 69847014 TTCATAGACTCCTTCCTTGGG 59 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 2 1 1 61 16 75400952 75401558 GAGATAGGAAGGCCAGTGAG 59 75401580 75401600 GCATATTCTTTAGGTCCGCAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07072894.1 ENSRNOG00000055818 ENSRNOT00000085004 1 1 1 80 3 78263326 78263347 TGTACCCACTATTGCTTGC 58 78263264 78263282 CCATACAGATTGCTCCACC 58 NA Rattus norvegicus 81 Col4a2 ENSRNOG00000023972 ENSRNOT00000057461 1 1 1 80 16 83400930 83400948 GAATCAAGGGAGAGGCTGG 60 83397869 83400888 CTCGGTTTCCTTTAACACCTG 59 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 3 1 1 85 16 75666711 75668089 GGTCCAAAGAAACTCAGGG 58 75666644 75666663 ACATGAAGAGCCTACAGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Micu3 ENSRNOG00000012767 ENSRNOT00000017025 3 1 1 81 16 55096002 55100380 ACAGATGAGCCCAAATTTGC 60 55086624 55086643 CTGGTGGAGTTTCTGAAAGC 59 NA Rattus norvegicus 81 Smim19 ENSRNOG00000024930 ENSRNOT00000036506 1 1 1 86 16 74413067 74413085 AGATGCTGTCAGAACCCAG 59 74413134 74420165 ACTTTCTTGAAACGGGATGC 59 NA Rattus norvegicus 81 AABR07026311.1 ENSRNOG00000038375 ENSRNOT00000058436 2 1 1 92 16 71438655 71438675 GCTGGAAAGTCTGGAAAGG 59 71438731 71438749 CAGGTGTCGATGAATACGG 58 NA Rattus norvegicus 81 Adam9 ENSRNOG00000017231 ENSRNOT00000041330 1 1 1 80 16 71828835 71829752 CTGCTTTGGACTCAGAGGA 59 71829795 71829814 TCAAAGTGTGAGCTGTTGTG 59 NA Rattus norvegicus 81 Proz ENSRNOG00000019700 ENSRNOT00000026666 1 1 1 80 16 81795739 81795758 AGTGTTACGAGGAAATCTGC 58 81794070 81795696 GACTCCAGAACTCATCCGT 59 NA Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 3 1 1 81 16 75027273 75028937 TCATTCAACTTCACCCAGC 58 75027210 75027228 CAGGCAGTTTCACATCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823,ENSRNOT00000008959 2 2 2 80 3 171001170 171002761 ATCATGGTTACGGGAAAGG 57 171002804 171002823 AGGAATATGAAAGGTGTCCC 57 NA Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163,ENSRNOT00000089447 2 2 2 80 16 82008246 82008264 GATTCTCCTGTACAGCCTC 57 82007016 82008202 GCAATGTCTCTGTAGAGGG 57 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 2 2 2 80 3 65864532 65869283 TTTAAGCCACCAAAGGTTACC 59 65869323 65869343 AATATCCAGGCAGATGACTCC 60 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 2 2 3 94 16 75415445 75415463 CTAGATCAGGAGCAGCTGG 59 75414889 75415389 GACTTCACATCTGCATCTTGG 59 NA Rattus norvegicus 81 Prrg3 ENSRNOG00000045663 ENSRNOT00000074955 2 1 1 67 16 69961010 69961033 GAAGAGGTCAAGGAAGTATTTGAG 59 69960581 69960599 GCATTTGGGTATCCCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Atp5hl1 ENSRNOG00000038744 ENSRNOT00000059185 1 1 1 60 16 51816661 51816682 TAGTATGTCTGAGAAACCACCA 59 51816703 51816721 CTTGCCTACATTGGTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybl2 ENSRNOG00000007805 ENSRNOT00000010343 2 1 1 80 3 159440990 159441010 TTCCTGGACTCCTGTAATAGC 59 159441051 159441908 GTTCAGAAACTGGGAAGGAG 58 NA Rattus norvegicus 81 Cul4a ENSRNOG00000019649 ENSRNOT00000026653 3 1 1 80 16 81720189 81722031 ATTTCCAGTAAAGCCTGGAG 58 81720128 81720146 CTGTCTTTGTCTCGTTCCA 57 NA Rattus norvegicus 81 Nat3 ENSRNOG00000029977 ENSRNOT00000043305 1 1 1 60 16 23903651 23903672 CAATCATCTTCTTTACTGGGCT 59 23903612 23903631 TCCTCCTAACATTGTGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364509 ENSRNOG00000050067 ENSRNOT00000074978 2 1 1 60 16 61874362 61874386 CTAAAGTTGATTGGAGAGTATGGAC 59 61874326 61874345 TAAATTTGACCCTCCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn22 ENSRNOG00000030889 ENSRNOT00000040731 1 1 1 60 16 47534913 47534931 GACCTCTGGTGTGATGGTC 60 47534871 47534889 CTCTTGCACTGTCATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000086896,ENSRNOT00000057845 1 2 2 80 16 79875340 79875358 AGTTCGATGAACTGCACCA 60 79872717 79875300 GGATCTTCCTTTCTTCCTTTCTC 59 NA Rattus norvegicus 81 Spi1 ENSRNOG00000012172 ENSRNOT00000016306 3 1 1 80 3 79921632 79921653 ATACCAACGTCAAACACATGAC 60 79921691 79935252 GAGAAATCCCAATAGTGATCGC 59 NA Rattus norvegicus 81 Jund ENSRNOG00000019568 ENSRNOT00000026470 3 1 1 63 16 20486271 20486289 AAGGCTGATCATCCAGTCC 59 20486226 20486244 GTAGAGGAACTGCGTACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83d ENSRNOG00000015794 ENSRNOT00000021308 1 1 1 107 3 155269748 155269766 TGTCGAGGCTCATTTCCAG 60 155269837 155281684 ACCACAGCAATCACCTCTC 60 NA Rattus norvegicus 81 LOC100359747 ENSRNOG00000042156 ENSRNOT00000064894 3 1 1 66 15 32136776 32136795 TATTCCTGTTCTCCTGGCTG 59 32136986 32137004 GAAAGAACCTGCTCGACCT 60 NA DesignNoJunction Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 1 2 2 80 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856013 150856032 CAGGATGAGCAAATCGACAG 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000080324 3 1 2 85 2 196494813 196496306 CATAACTGGAAAGGAGCTGG 58 196496354 196496372 CACTCTGAGGATCCCTTCC 59 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000080677 1 1 2 83 2 56123073 56123091 CATCTCAGCCAACAACAGC 60 56121597 56123028 TCATGGACTTTACCATGTCCA 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 1 2 3 80 2 219096813 219096831 AACACTCTTACCTGTGCAC 58 219094648 219096771 TAGGGAATGAGTAGATGTCCA 58 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174 2 2 3 176 2 187863138 187863156 AGTCTGAAGAGGTGGTCAG 58 187849810 187862996 CTCCTTCTTGGTATTGCGC 59 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748 1 1 2 80 2 248789493 248810740 GACTCTGCAGATTGTCCGA 60 248789431 248789451 GGCCATCAATCTATTGTTGCT 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 3 2 2 80 X 31154942 31157338 TGTCAATGACCTTAGTGAATCC 58 31157378 31157397 TCTTTGTCATAACCGTGCAG 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 3 3 3 147 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471746 170471764 AGAATGGATGAGCTTCCCA 58 NA Rattus norvegicus 81 Cuta ENSRNOG00000000481 ENSRNOT00000072319,ENSRNOT00000000568 3 2 2 85 20 5533014 5533032 ACGTTCCAGGATCAGTCTC 59 5532828 5532965 CTTCTCTACCACTGCCCTG 60 NA Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621 2 1 2 82 5 14616941 14617579 GACCCAAGAAGTCTAGAAATTCTG 59 14617619 14617638 GGTGGAAGCATTCTCTTTGG 59 NA Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 1 1 1 94 2 39316696 39316717 ACTCATTGATAATCCCAGAGGA 59 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 2 1 1 94 2 39316696 39316716 ACTCATTGATAATCCCAGAGG 57 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 2 2 3 86 15 42656260 42657861 GAGCTCCAAGAACTGTCCA 59 42657910 42657929 GGTCTTTATGTGCTTCACCC 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000078300 1 1 2 80 1 162030563 162034363 AAAGCCTATCAGTGGTACCT 58 162034405 162034424 GTAGCGTTCAAATCCCATCC 59 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000024023 3 1 2 80 2 30275074 30275093 GGAGGAACAAAGCATCAGAG 59 30274528 30275032 GTACAAGCTGTATCCCTGGT 59 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116 1 1 2 87 11 47263036 47263054 GAACTCGGTGAAAGAGCTG 59 47263103 47266325 AAAGGCACTCTTAAACTCGTC 59 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 1 2 2 84 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780747 132780768 GTTGATTTCCTTGATCAAGCTG 58 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 1 2 2 80 17 9552699 9554382 GATCACTTCAGGTTCAATCGG 59 9552639 9552657 CATGGCGATGTAGTCTGTG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000057734,ENSRNOT00000082549 1 2 6 84 17 84171263 84171281 AACCTATAAGGCCACTCCG 59 84168275 84171217 ATAATAAACCGCACTCAGCTG 59 NA Rattus norvegicus 81 Tspan7 ENSRNOG00000003229 ENSRNOT00000060857,ENSRNOT00000051898 1 2 2 80 X 13277348 13278845 TGAAACTGTATGCCATGTTCC 59 13277288 13277308 CATGACGAAACACAAATCCAG 58 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274 2 1 3 80 17 10623255 10623307 TTTGTCATCCTTGTCATGCC 59 10623194 10623212 CATGGCACTTCTTGAGGTG 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 3 2 2 80 4 64681870 64681889 CACATCCTCTTGGTCTTCCT 59 64660471 64681827 TCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000070871,ENSRNOT00000072140 2 6 7 81 11 46301818 46301838 TGAAACATTGGCTTTACCAGC 60 46299853 46301776 TTCCGGAGTCACTGTTACTG 60 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 1 2 2 80 1 32224229 32225001 ACAGAACAGGATTTGTGCAG 59 32225041 32225062 ACGTAATATTCAAAGTCTGCCG 59 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000005332 2 1 2 105 13 94209153 94355044 ATAAGCTGGAACACTCCCA 58 94209066 94209084 TCTCCCATGATGTCCACAG 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957 3 1 2 134 1 205712703 205712721 GAAGATCCCAGTGCTTCCA 59 205715295 205715563 TTTAAGACCCTGACTGTTCTCC 60 NA Rattus norvegicus 81 Tmsb10 ENSRNOG00000042499 ENSRNOT00000022846,ENSRNOT00000041880 1 2 2 73 4 100882835 100882853 CTTCGATAAGGCCAAGCTG 59 100882504 100882800 GTTCAATGGTCTCTTTGGTCG 60 NA DesignRelaxed Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 2 2 2 80 4 34255978 34255998 CTGATGGAGAGTTATGTGGAC 58 34256038 34259242 AACATCTAAAGGTGAACCCTG 58 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 3 2 3 66 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569123 2593683 TTTGCGAATCCTAAGGAGGT 59 NA DesignRelaxed Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000036781,ENSRNOT00000071919 1 2 3 106 15 39732047 39735101 GATCATACACCTGTGACTCAG 58 39728177 39731984 CCTGTAGATAGAATGATACAGTCC 58 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000015578 2 2 5 84 7 115823272 115825578 TAGATCAGTGCTGAACAAAGAC 59 115825623 115825641 CTCTTCAGGCAGTGATGGT 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000015578 3 2 5 84 7 115823271 115825578 GTAGATCAGTGCTGAACAAAGAC 60 115825622 115825640 TCTTCAGGCAGTGATGGTC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 2 2 2 80 3 110483715 110484300 GCTACTGAGGTGGATATCTGG 60 110484342 110484360 GGAGTCGCTGAAGTAAGGG 60 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501 1 1 2 90 14 84703626 84705942 CACCACTGCAGGAATTGTG 60 84703554 84703572 GACTGGGTTCAAAGAGCTG 59 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 3 2 2 112 3 146982030 146983297 CAGATTGCACTTGCAAGCT 60 146983368 146988572 ACTCTATTATCACTAGGAGCTGTG 59 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 3 2 2 80 1 100653099 100654319 AAACATCGAGACCTATCTGC 58 100653038 100653058 TGGTAGAAGATATGGAAGCTG 57 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 1 2 2 80 1 83210795 83210814 TCAATCCTGAGCACTTCCTG 60 83210855 83236194 TACGCTTTCCTATGGAGAAGG 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000077698 2 1 3 83 2 188174021 188174039 GACTTTCGAACTGACCGTG 59 188174886 188184549 ATCTTGGAACGTCTCAAACAG 59 NA Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 3 1 1 62 1 247476472 247476490 GGGAAGATTCACAAACCCA 58 247473635 247473654 GACTGAGATTCCCAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183 3 1 4 82 6 52608436 52631087 AGTCGTTCTAGAGAAGACACAG 59 52631130 52631148 TGATGTCCGGAGATTGGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000068415 2 1 10 99 2 231333163 231333181 TCACACCATACATGTGGCT 59 231329847 231333100 GGGCGGCATAATGTTAGTG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 1 6 7 102 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610920 215611166 TTCATGTCTTCCAGCTCCT 58 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 3 4 7 83 1 215610468 215610577 ACCTGAAGAGTGTGATGCTC 60 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 1 2 2 134 9 9984376 9985197 GCCAAGAAACACCAGACTC 59 9983270 9983288 CTATGAGGAGGGTTCCCAG 59 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 3 2 2 137 9 9984376 9985197 GCCAAGAAACACCAGACTC 59 9983267 9983285 CTGCTATGAGGAGGGTTCC 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 2 3 3 89 10 4345457 4345476 GTTTAAGGACAGCAGGAACC 59 4345523 4445725 TGGTCTTACCTTCATCTCTTAAGG 60 NA Rattus norvegicus 81 Gimap4 ENSRNOG00000008369 ENSRNOT00000032742,ENSRNOT00000091359 3 2 2 80 4 78322449 78322468 TGAACTACAATGGAAGCCCA 59 78322510 78325811 TTGTATTCCAAGCTCATGGC 59 NA InUTR Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000087291 1 1 2 80 17 42926486 42927681 AGGCTCCAGTATGCAACTG 60 42926424 42926442 ACAAGCACAGTTGGTTTGG 59 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000067325 3 1 2 82 8 21925199 21925219 GATCTCCTACTGGAGAGCC 58 21925135 21925154 GATATGGTCCCTGAGGATGG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898 3 1 4 84 10 39307416 39307435 TTTACTCTGCTCTTTGCCCT 59 39211428 39307372 TGGAAAGAATTTCTGTTCCCAG 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 2 1 2 80 10 90347995 90348164 ACCCAAAGCTACGACTACC 59 90348208 90348226 TTCTGGTGAGTTGTCCTCG 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459 3 1 2 80 15 28525463 28525483 TTTCAACTCCATGAAGATCCC 58 28525525 28528718 GTTAGTCCTTGGCCTTCTG 58 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000077185 3 1 2 176 10 39459276 39461608 TATGAGTGATGTTGAAGCTGG 58 39462057 39463632 TTATTGGAGACCCACTTGC 57 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 1 5 6 80 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550367 157550385 TGTGTATGCTCGGTGACAG 60 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000078175 2 1 2 83 4 114879993 114880012 AGACTCCTGATTCTTCTGCT 58 114880220 114884656 GAGTTGTGGTCAGTTTGCT 58 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000078175 3 1 2 83 4 114879992 114880011 GAGACTCCTGATTCTTCTGC 58 114880219 114884655 AGTTGTGGTCAGTTTGCTG 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599 1 1 2 80 13 80698458 80699828 GAAGTTTGCTGAAGCATCTG 58 80698397 80698416 CATGACATTTCCTTGCAGAC 58 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 2 2 3 112 10 77755794 77763104 ATTCCAGCGTTTCATGAACC 59 77765228 77765246 CAATGGCTGGAACGATGAG 59 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 2 1 1 62 1 239223092 239223110 ACAAACCACTGTCAAAGCC 59 239209366 239209387 AAGAGTCCTTTACTGTCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000029677 1 1 2 80 9 53453119 53453138 ATGGAGGGCTCTACAAAGAC 59 53450303 53453077 GTCATGACCTTCCATACACG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000012634 1 1 2 82 14 85343700 85343718 TATACCCAGGCTCAGAGCA 60 85339629 85343655 GTGGTATAACCAGTGGGAGG 60 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 2 2 2 85 3 123690557 123693735 TAGTCAAGGTAGGCTTCCT 57 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 1 3 4 80 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534705 43537130 ACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000078436 3 1 2 81 6 102357133 102357151 TGAGACAATAGCCAGACGG 59 102356873 102357094 CATGATACTACTAGAAACGCAATCC 60 NA Rattus norvegicus 81 Cd47 ENSRNOG00000001964 ENSRNOT00000078434,ENSRNOT00000078221,ENSRNOT00000050142 3 3 3 82 11 53529951 53529972 ACCATTGCCATATTGATCACTC 59 53528276 53529908 GGTTCACAAGCCATGATGC 60 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000006832 3 1 2 82 6 7882907 7882927 CTGCATTCGCATTTACTTGAC 59 7882971 7885429 CACTGACAGATGGTTTGGC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000074303 3 1 6 80 1 282700302 282700520 AGCACAAATGATGCTTCCTC 59 282700563 282700581 AGGGTCTGGGAATCATCAG 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 1 6 6 83 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282683838 AGGAAGCATCATTTGTGCT 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000028902 ENSRNOT00000048335 2 1 1 61 18 35196585 35196603 CTTCATTCGATGCTCCTGG 58 35197275 35197293 ATCAGTCCATGTGTAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994 2 1 2 94 7 9826302 9826321 CCTACTTGAACCTCTGTGGT 59 9750423 9826051 GGCTGAGATGCTTTCATGTC 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000015564 3 1 3 81 2 231059959 231059977 CAACTATGCTGGCTACGAG 58 231063293 231078913 CTCTCAGTTGACTCCTTTACC 58 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 3 1 1 63 15 18516849 18516867 TCATGCTAGCACAGTCCAC 60 18516278 18516296 AAGAAGAAAGCTGTGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 3 2 2 80 1 88042952 88043646 AACTACGTCACCAGCATCC 60 88042890 88042908 CTCGAAGTACCACTTGCCA 60 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 1 1 2 237 5 116963696 116963714 CAAGGAAAGAAATGGTGCG 58 116964752 116964770 TCAAGGCAGATTGCTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 3 1 2 238 5 116963695 116963713 CCAAGGAAAGAAATGGTGC 57 116964752 116964770 TCAAGGCAGATTGCTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 2 2 2 80 19 30880747 30883019 CAAGTTACGGAAAGATGCTGG 60 30883059 30883079 TCCAAGGAACTGGATCTATCG 59 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000067442 3 1 2 146 7 115908655 115908673 CTACAGACACAGCAGATCC 57 115908287 115908545 GGTATGAATCACTGCTGGG 58 NA InUTR Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 3 2 2 81 5 16913699 16913718 TAACAACCATGGCCATTTGG 59 16909787 16913657 ACTTGCACAATAGTCTGACAG 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 82 12 7478997 7479017 CACACCAGATATCGAAGAGTG 58 7479060 7530858 TTTCCTTGCCTTGTCATCTC 58 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 3 3 3 93 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738154 97738173 CAGACCATGACATTCAGCTG 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000076359 2 1 3 89 X 62693560 62698786 AAACAAGCGATGTGTCAGG 59 62693489 62693507 CTAAAGCTTCTTGGCGTCC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000034472 1 1 4 80 19 755960 757536 TGATGAAACAACAGGAATCCC 59 757578 757596 GTACACTAGCTGGTCCACC 60 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785,ENSRNOT00000049812 3 2 2 80 1 222683893 222686398 GGACATCCATTCAAGGCCT 60 222683831 222683851 CATTGCAGCATTCATGTAGCT 60 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401 3 1 3 82 7 116158778 116198846 GTATCAAGAAATGTGTATCGCG 58 116158717 116158736 GTACTCTGTGCTACCATCTC 57 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000088559 3 1 3 86 2 157873800 157873819 GAAGTTCATCAAGAGGTGGA 57 157869907 157873751 GGGTCGTCCTTAGATTTCC 57 NA Rattus norvegicus 81 Peli1 ENSRNOG00000006329 ENSRNOT00000009319 2 1 1 80 14 106056679 106059284 CACTGATATGTTTCAGATTGGC 58 106059325 106059343 CTCTGACTTCCAGGAACTG 57 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 2 2 2 123 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571936 21571954 AAGTCCAAGTTTGGCAACC 59 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 1 2 2 80 4 114962584 114964202 TCATGGTGGATGATCTCTTCAG 60 114964241 114964261 GAAATTCATCAACTCCTGCGA 59 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 3 2 2 80 4 114962585 114964202 CATGGTGGATGATCTCTTCAG 58 114964242 114964262 AGAAATTCATCAACTCCTGCG 59 NA Rattus norvegicus 81 Prl3c1 ENSRNOG00000017203 ENSRNOT00000023166,ENSRNOT00000088978 2 2 2 80 17 42813730 42813752 GAGCCATAGAGCTTAACTATGGA 60 42812813 42813691 CAATTCCAGGCTGAATCCTG 59 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 3 1 1 62 1 89132840 89132858 CTTAGGAGTGGTAGGCCTC 59 89132628 89132646 CAGTCACTGCTCTGATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 1 2 2 80 2 94720854 94720872 ATGTGTCACTGTCGATGGA 59 94717202 94720812 ATTTCTGACTCATTTCCCACC 58 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 3 1 1 60 2 111061156 111061177 TGTAGTAATGACATACTGGACG 58 111059906 111059924 AGGAACTGGTTGATTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 2 2 2 91 3 138387917 138388649 TCACACCAAGACCACACTG 60 138387844 138387862 TAAGAGTGTCATGCAGCCA 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275 3 1 2 88 20 10362822 10364717 CATGAGCAGATCCAATACCG 59 10362753 10362772 AAGTTTAGCAGGTCAATGGC 59 NA Rattus norvegicus 81 Mtss1 ENSRNOG00000009001 ENSRNOT00000080155 1 1 2 170 7 98835950 98849308 AAAGGGAGAGGTGACATCC 59 98834582 98835816 CTCTTCCTCAATCACTGGC 58 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788 1 1 2 83 4 138269325 138441408 GCCTTGCAGATGACTACAC 59 138441454 138441473 TCTCCTCAGAATCCAAAGGA 58 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 1 2 3 107 3 72432627 72432844 TTCTGTCCAGAGAATGAAGAG 57 72431993 72432011 AACAGAGCTGTAGTTCACG 58 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408 2 1 2 80 17 45510440 45510461 ACTGCTACAAAGATGTGAAAGG 59 45510504 45510523 ACTGCTTGAATGGAATGCG 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000070918,ENSRNOT00000052367 1 2 6 80 6 4307837 4311884 TTCACATTAACAGGCCAACC 59 4307776 4307797 TGAAATGCTGATTACGGTAGAG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000070918,ENSRNOT00000052367 3 2 6 80 6 4307840 4311886 GCTTCACATTAACAGGCCA 59 4307778 4307798 AAATGCTGATTACGGTAGAGG 58 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 2 2 2 80 8 48725160 48726452 CTCTATGTTCCACTCGCTC 58 48725098 48725116 GTTTCCAGCATCTCAATGC 57 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000087178 2 1 3 154 17 47309282 47309301 CCTGATGCTGTACTCATGAG 58 47318350 47320754 AACCTCTGTGTCTTCTCCTC 59 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000090021 1 2 3 80 17 47339836 47339856 CGTTGGAAAGAGTTAATCGGG 59 47339895 47340619 AGCAAACCGTACACATAAACTG 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000041921 2 1 4 80 3 8453646 8453665 ATGTGGATGAGAACACTCCT 59 8453707 8454011 TATGAGATTTCTGGCTGCTG 58 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020407,ENSRNOT00000041921 1 2 4 80 3 8487989 8494330 CTCGTGATGATGTGGATCG 58 8494374 8494392 GGTTGGTGCTTTCAGACTG 59 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 1 2 2 80 6 26693349 26693367 ACCTCCTGAAAGACATGCC 60 26693411 26693727 CGGAGGATATGGTGCTGAG 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000077994 2 1 4 80 17 27507194 27510665 AGAGTAGAAGAGATAAAGCTTCTCC 60 27510701 27510721 TTTACTCATCAGATCCCACCG 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000089736 3 1 4 82 17 27513010 27523781 GAGAACTGAGACTTGCCTG 58 27523830 27523849 CTAGCAACTTCCTGAAGCAG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008301 2 1 4 80 3 63186990 63187011 AAAGGTATCATTGGCTATGTCG 59 63139891 63186951 ATCATTGAATCTTCGGTCCTG 58 NA Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748 1 1 2 90 16 19366509 19369073 CTGCAGATATGGGACACAG 58 19363174 19363192 CGTAGACCAGCATGATACC 58 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000078039 3 2 3 80 1 32109976 32109997 GTACTTTGTGCAGAACAATGTC 59 32109364 32109935 CTCCACAGGTTATCCAGGA 58 NA Rattus norvegicus 81 Lrat ENSRNOG00000025608 ENSRNOT00000082156 3 1 2 247 2 181899921 181899942 GTAAACTGTACTTCTGGTTGCT 59 181899665 181899683 CTGCTGTGACATACCTCTC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Phb2 ENSRNOG00000012999 ENSRNOT00000017472 1 1 2 80 4 157234385 157234404 AACCGGATCTATCTCACAGC 59 157234841 157235036 AATGAGGCTGTCACTTCCC 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000080013 3 1 2 82 6 6637421 6638640 GAGTGGGTATATGGTTATCGAG 58 6638680 6638701 GCGATGAAATAAACTATCTCCC 57 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470 3 1 2 81 18 29590862 29590882 TCAGGAAACTTCTTATGACCC 57 29590925 29591621 TCTCTTGGCATCTCATGGT 58 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000078063 2 1 2 85 5 152367303 152368059 TCCGAAAGATCGTGGAGAG 59 152363748 152363766 TTCTTGTGCCAGTTCTTGC 59 NA Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 1 2 2 80 10 831375 833074 TTCACTAAAGTAAAGCCGCTG 59 833115 833134 GATCTTCTGCATCTCCTCCT 59 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991 2 1 3 99 9 10632348 10632366 TACCAGGTCCACTATGTGC 59 10632428 10634087 TTGTGATCACCATTTCCTGG 58 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991 3 1 3 100 9 10632348 10632366 TACCAGGTCCACTATGTGC 59 10632428 10634088 TTTGTGATCACCATTTCCTGG 59 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 3 2 2 81 3 176093763 176093782 GATGATACGACCGATGAGGA 59 176093826 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 1 2 2 80 8 70723518 70726653 ACCTGAACAAGACTTCTCTG 57 70726694 70726714 CGTGAGGACTATAAATGAGGG 58 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 1 3 3 82 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 2 1 2 80 6 93429467 93431202 ACATGTTGGAATGGCAGTG 59 93431246 93431264 AAGTTGGACGCTTCTTCTC 58 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000084155 2 1 2 80 6 41838908 41838926 AACACATCTGAGGACGAGG 59 41835610 41838866 AGCTCTAGAGGAATCCATCAG 59 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 3 2 2 80 5 36586202 36596525 TTTAGCAGGTTTCTGAAGGTG 59 36596565 36596585 GCAAGCGTCATTAAGAAAGTG 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000066384 3 1 3 85 2 41158103 41261851 TCCTACAGTTTCGATGTGGA 59 41261899 41261917 AGAATTAGCCCAGACCCTG 59 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000078714 1 1 2 81 16 19659071 19659089 CAGAAACATCAGGAGCTGG 58 19658291 19658311 TTTGAAGCGCTAACACAGG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000014211 3 1 3 80 5 57454210 57454231 CAAATGAAGAACTGAATCGCCT 60 57454067 57454172 GTAACTCCTCCACTTGTAAACG 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353 3 1 3 81 6 8344413 8344432 AGTGTCTGCAGAATAAACCC 58 8336093 8344369 GGCAGAAGATCCTTACGTG 58 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000009660 1 1 3 82 6 8344422 8344440 GCTAACCAAGTGTCTGCAG 59 8337409 8344377 TCTCCTTCAGTGAGAAGCTC 59 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937 1 1 2 95 6 27476725 27476748 CACATCCATTATGGAGTACAAGTG 60 27475090 27475114 CAGTCCTAGATCTGAGTTTGGT 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 2 3 3 80 9 10658953 10658973 GCTCAGACATTCTATGAGGTC 58 10658811 10658911 GTCTCTGCTTGTGATGCTC 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000074644 3 1 2 96 2 231873942 231873960 TGGAGACAGAGTCCAAAGC 59 231873198 231873218 ATCACTCCAGTCACGAACTG 60 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000073148 3 1 3 81 10 42629271 42629295 CAGTATAAATGTGAGGAACAGAGTC 59 42629334 42629356 CACAGGACTCATCCGTACC 60 NA Rattus norvegicus 81 Rell1 ENSRNOG00000002192 ENSRNOT00000076881,ENSRNOT00000002984 3 2 2 130 14 46022149 46024969 GATGTTGAAAGCCCTGTCAC 60 46025062 46025080 TCAACAACACCTCCCACTG 60 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 3 2 2 80 2 164611573 164614764 CTGATTTAAAGTTAGCGATCCG 58 164614805 164614823 TGTTCTTCAGAGCACTTCC 57 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 3 1 2 82 2 164627236 164627257 AGACCCAACATTTAAAGTCCAC 59 164627298 164627321 CATAGATCTCAGGTGCAATTCTC 59 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 1 2 2 80 20 5804162 5805501 TTTATCAACCTGGAGGACGG 60 5804101 5804119 CAGGATGGTGTCATGTTGG 59 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 1 2 2 80 16 19913525 19913645 ACCCATTGATCCAGCTAGC 60 19913463 19913481 ACAGCAGGGTTGACTAGAG 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000081061 2 2 4 96 X 53504942 53504962 GAAGATCTTCTGAGTCCTCCC 59 53505016 53512017 CATTTCTTCCTCTTGAACTAGGG 59 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 2 2 2 80 1 101898810 101899045 AAGGCACACCTGAAGAGAC 60 101899088 101899107 TTACATCACAGCCTGACTGG 60 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 2 2 2 81 15 37720361 37725215 TGGAACGTGAAAGGAAAGC 59 37725260 37725278 AAGGAGGCTTCGATCACAG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 1 2 5 260 2 192604979 192604997 TGTCTTACCAACAGCAGCA 60 192616085 192616103 GAGGAGTTTGGACAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001333 1 1 2 94 12 2239660 2240888 CAATCCAGAACGCTCTTCAG 59 2239394 2239412 GTTCTGGGAGAGCTGAGAG 59 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000073501 3 1 2 93 4 22970353 22970372 TAGGAATAATTGCTGGCACC 58 22975179 22980089 GGTAACTGTCTCTGTTCTCG 58 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433 1 1 2 83 6 42615652 42616478 CCTGGCTAATGGAGGTCTG 60 42609371 42609389 ATGTCCCACTCGAAGTGTG 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 1 3 3 80 20 2205231 2205628 GTATAAGACAGTAAGCGTCACC 59 2205172 2205191 GTAATGCACTTCCAGTCCTC 58 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623 2 1 2 83 9 14545241 14550055 TAAGTCAACGATTGGATGCG 59 14545177 14545196 TCTGTTGACTCAAACACCTC 58 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 1 3 3 167 15 51779927 51799358 GGATTCCATTTAAGATCGGGC 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000034495 3 1 2 80 5 17650896 17663136 ACGTGCAGATAAATACTGAGG 58 17650836 17650855 TGTCCTCAGGAATCTTACGG 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 2 3 3 84 7 2907679 2907934 AGAGCGATGAGATGAATGTG 58 2907614 2907632 CCTTGGTCCTTGTTCTTGG 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000085644 1 1 3 112 7 2907651 2907669 GACTTTGAGCACTTCCTGC 59 2907370 2907576 GTTGCTGTCCCTTCTTTGTC 60 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971 1 1 5 80 5 101697836 101738243 CTGAACTTGCTAAGAAGCACC 60 101738285 101738303 TGCCCAAGATGGATTCCAG 60 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000020003 1 1 2 171 19 37204579 37204600 GAAATATGCACAACCTACAGCA 59 37206291 37207053 GGTTGTTCTGCATGACCTC 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000083125 3 1 4 90 10 1459124 1459142 ATGGACCCTCAGTAACAGC 59 1457971 1459071 AAGTCCATGGAATGCATTGC 60 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 3 3 3 81 17 59714733 59714753 TTCAGAAGCTTGATGTGACAC 59 59714796 59723846 GATTCTCGCAACTCATCCC 58 NA Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 3 1 1 84 20 6194094 6194115 CAATCACAGGATGATTCAAGAG 57 6193126 6193144 GCCTCTCATGAACATGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 1 2 2 80 9 49859660 49859680 AAGAAATACCCTAAAGCCCTG 58 49858869 49859620 GGTGTGGTACTCTTCTTTCTG 58 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 3 2 2 80 7 30317098 30317809 CAACTGGATCAGTTGAGTCG 59 30317037 30317057 CAACAGTTTGACATGTTCACG 59 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000082016 1 1 2 146 7 30315058 30315079 TGTAAATCCTGACATGGTACCT 59 30312456 30314951 ATCATGTTGCTAGCCTGGA 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452 2 1 4 80 1 24215609 24215630 CATGTAATCATGCCAACATCCT 59 24190592 24215569 TCTGTTTCATGAAAGCTGGG 59 NA Rattus norvegicus 81 Rab30 ENSRNOG00000010224 ENSRNOT00000092066 1 1 2 80 1 157649677 157654754 TGGTGAGAAAGTGAAGTTACAG 58 157654793 157654813 CTTCGGTAGTAACTTTGGGTG 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000084295 3 1 4 83 2 9472246 9472372 ACACATTCAAGGATGGTCTC 58 9472182 9472202 TATTTCTGCTTCTCCACAGAC 58 NA Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 1 2 2 80 1 229049450 229050279 CAGATCCAAAGTTCACAATCC 57 229050321 229050339 TGTTCTCTTGACCTTGACC 57 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685 1 1 4 81 10 67614956 67614975 CCTTCACTTGTAACACTGCT 58 67615019 67615993 TGATCCTCTGGGTACATGG 58 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 2 2 2 91 9 100923719 100923737 TATGAGACTGGGACGTTCC 59 100922032 100923664 GAAGCATCAACCACCTTCC 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 1 2 4 173 15 36823466 36824068 AAGTCGTTGAGGTCTCTGC 60 36825285 36825303 GTGCTGCTATCACAAAGGG 59 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846 2 1 2 83 1 166781361 166786253 CATTCTTTGGAAGATGGGAGAC 59 166786297 166786315 CCATCTCCTGAACTCCAGG 59 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 1 2 2 84 1 72639156 72639174 AAAGACTCTGGAGCCAGAG 59 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000058735 2 1 11 103 6 99150486 99150504 GATCTGATGTCCTTGCAGG 58 99151226 99151872 TCTCCAAACTGCTTTGCTG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070 3 1 11 80 6 99141898 99143414 CGCACTGTCAGGTAAATCC 59 99143456 99143476 TTGTAGTGATGCTTGGAATGG 59 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299 2 2 3 188 13 52629403 52631325 GAGAGGAAATCTAAGATCACTGC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 3 2 2 80 3 3346295 3346314 CTCCCTCAAGATCGATCTCC 59 3346356 3346666 ATGACCACGTAGTAGTCCTG 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464 3 1 2 80 9 14499176 14499195 AATGGGAATGAAGAGTGCTC 58 14498305 14499133 TTTGGTTTCCAAGCCATCC 59 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 1 2 2 80 1 259079870 259079889 AGATCCTTCTGTCTCAGAGC 59 259079726 259079830 CTAAGACTGGAATTGCCATCTC 59 NA Rattus norvegicus 81 Gpihbp1 ENSRNOG00000007475 ENSRNOT00000009811 1 1 1 60 7 116633673 116633692 TGTATCACAGTCATCTCCCA 58 116633829 116633847 ACATGGAGTAGGTCGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 2 2 2 65 1 81376269 81376289 AAGATGATGAAGACCTTTCCC 58 81381492 81381510 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000081370 3 1 2 80 3 148654673 148654833 TAGCATTCTGATTTGGTGGC 59 148654876 148654894 ACTCCAGGGACATAGAAGG 58 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000079698 3 1 2 80 10 17636220 17636568 ACCTTGGTGGAACACTCTG 60 17636612 17636630 AGTGTCATCATGGGAGCTG 60 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951 3 1 4 81 2 78158677 78158697 GCAAATCATCAAGGACATGGT 59 78164707 78247462 GATAACTTCCCAGCTTTCACTG 59 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109 1 1 2 81 3 112486249 112486267 GATGGACAACTTGCAGCTC 59 112486312 112487625 CAGTTCATGACAGCACTGC 60 NA Rattus norvegicus 81 Pdhx ENSRNOG00000006947 ENSRNOT00000009552 2 1 2 80 3 92927037 92927056 CTGGTGTTCAGATTTCACGT 59 92924105 92926996 GAGTGCATCTTCATGACTGTG 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389 2 1 2 80 5 102432560 102432578 AATGCATGTCTGCACAGTG 59 102417194 102432518 TTTATGTTGGCACTGTGTCTG 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867 2 1 2 80 11 65076138 65076156 CTTATCCCTCCTCACGCTC 59 65066376 65076096 TCCAGCATTAGTATCTGAGGC 60 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677 3 1 2 95 4 79022007 79025374 GTACCGGAGAATTGTTGGT 58 79025432 79025451 TGTAAACGCATGGGTAAGAC 58 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115 3 1 2 80 19 28291653 28291689 CAAGAGACATGGAAGAAGACAG 59 28291594 28291612 CCTGTTGAGGATTGTGGTC 58 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 3 2 2 81 1 101071399 101071499 CCAACACAGATGGTGAACAG 59 101071543 101071561 ATCCAGAAGCTGGGTAGTG 59 NA Rattus norvegicus 81 Nt5c3a ENSRNOG00000005981 ENSRNOT00000083491,ENSRNOT00000058703 2 2 2 80 4 87249184 87249204 GTATCAAGAACCCAACGAGAG 59 87247941 87249145 CGGTTATTATCTGAAGTTTGGC 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602 1 2 4 87 6 99192274 99192292 ACCATAGACAAGAACCGGC 60 99184559 99192223 TCCTGGATCCACACTTGAC 59 NA Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266 2 1 2 85 20 9852853 9852871 GTAACAACCGTGGTTGCTG 60 9850974 9852807 AAACGTACATTCTGTCTCTTGC 59 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 2 2 2 89 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529440 18529459 AAGTTCCTGTAGTTTCTGCC 58 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613 3 1 2 86 13 91852605 91872885 TCTTTCCCAGGACGATAGC 59 91852537 91852556 TCTTTCACTTGGCACTTGAG 59 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663 3 1 2 80 20 28722660 28757515 ACCGAAAGAAGACTGATGGAG 60 28722600 28722622 GAGAAGAAATACACAGTCTCACG 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 2 3 4 81 7 140416206 140416225 TTCACAGTATGGGACGTAGG 59 140415949 140416165 ATATCAAGCCTTGGGTATTCTG 58 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 3 4 4 81 3 3000772 3000792 AGGGTCATTGTCATTTGAGAC 58 3000834 3001451 GTCTTCTTGCCTTTGAAGGT 58 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 2 2 2 83 12 11407276 11500483 GATCCGTCTGACAGTATTGTG 59 11501752 11501771 ACAACAATCTTGGCAAAGGG 59 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 3 2 2 80 17 66243017 66244878 CTTACGATATGCCCAGACTC 58 66242956 66242974 TCTTCAATCGAGCCATTCC 58 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000081280 2 1 2 80 10 31357911 31359498 AGAGAACAAATCCAAGCCC 58 31357849 31357867 AGAAGGACAGAATCACAGC 57 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896 2 1 2 83 12 11223690 11223708 CTGAAGACATATCACGCCC 58 11223752 11224486 GATGATTTCCTTGAAGACTTCC 57 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313 2 1 2 84 13 105071381 105123696 TCTGTGGGTACCTTGATGC 59 105071315 105071335 TTCTCCATTGTTGAGACATCG 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 1 1 1 99 10 45534517 45534535 AAGGTTTGCATTTCCAGCC 59 45528691 45528709 ATTGTGGATCTCCTCCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 3 2 2 80 11 68150278 68150297 CCTGATTTAAAGCGTTTCCC 58 68148921 68150236 AACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000091424 3 1 2 114 18 3996045 4031688 CAATACAGAAATCATAGCCCAC 57 4033872 4033891 TCTTTAAGTCATCACAGGCC 58 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045821 1 1 2 80 8 107230048 107231028 TTTGAAGATGATGAAAGCCCTC 59 107231068 107231087 GTCACTTAATGCTACGTCCC 59 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396 1 1 2 100 6 58523802 58542042 GCATATGATTCAGGCTGCA 58 58545000 58545018 GGCTCTTGCTTAATGTCCC 59 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000019511 3 1 2 81 16 2958427 2958446 CTACCTCACTGTCAAGAGGG 59 2958489 2984460 GTTACTAGGTTCCTCGTCCT 58 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000044143 1 1 3 85 3 93663845 93663863 TTATCCCAGCCATTTCCCG 60 93661930 93663796 CTTTGCTGCTTCATCCGAC 60 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000006924 1 1 2 92 13 75126751 75126769 TCCAAGAGCATGTCCACAG 60 75126824 75142883 ATCATTGACCTTCTCCAGCT 59 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000085042 1 1 2 80 3 8915075 8919282 CTCCCTATGGGAAGACACTG 59 8915014 8915033 CAGTGTGAATGAAATCCCGT 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 3 2 2 80 12 17254938 17257977 GCATTCAAGAAGGATGTGC 57 17258021 17258039 ATCTGGGATGTCACCTCTC 58 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 2 1 1 116 9 82054304 82054322 CTGTTCTTCCTACTGCTGC 58 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 1 2 2 80 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886902 151886920 TCCTGAAGCAGGTAAGCTG 59 NA Rattus norvegicus 81 Lrrc58 ENSRNOG00000027151 ENSRNOT00000034334 1 1 1 60 11 65751570 65751588 ATCCAAAGTGTGCCTCCTC 60 65750453 65750471 TGTGTAGACTGAGGGATCG 58 NA DesignNoJunction Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116 2 1 2 122 1 48318481 48327832 CGAGAATATGCAGAGGCCA 60 48318377 48318395 AGAGCAAAGTCAGCTCCAG 60 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000070981 1 1 2 80 10 13411005 13415180 CTGCTGAGATCTGTTCTTCC 58 13415223 13415241 ACCTTCTAAGGCATCCTCC 59 NA Rattus norvegicus 81 Cyp2b1 ENSRNOG00000033680 ENSRNOT00000044127 2 1 3 80 7 99175102 99175123 GAGACTTCATCGACACTTACCT 60 99175164 99175599 TGTGGTGGTTCGACTTCTC 60 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 3 2 2 80 18 61700396 61700415 GGGACTTCCGTAATAAACCC 58 61697280 61700356 CATTATTGATCATGACCGTCAG 57 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000045087 1 1 2 80 8 113960242 113960263 GAGACACAACAATGACTTTCAC 58 113957486 113960202 AGACTGCAAACTGAGATCTG 58 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175 1 1 2 80 8 114013464 114013484 ATGATCCCTGTACTGACATCC 59 114011255 114013422 ATTCTGAAGATCAGCCTGGAG 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 2 4 4 80 15 8895307 8898162 ATGTCTTCAGATCGCCCAG 60 8895245 8895263 GTGTTCAAAGGCCAACAGG 60 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193 2 1 2 83 10 37050001 37050285 GCTACGACTACAGTCAGGG 59 37049936 37049960 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000082205 2 1 2 81 8 49698667 49698687 TGCAGTTTCAATCAGAAACCC 60 49699378 49702192 TTCTGGAGGCATTTGTGGT 60 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000044195 1 1 4 81 1 265553269 265554219 CAGTGAAACATTAGCTGCC 57 265552627 265552645 AAACTCATCCTCTACGCTG 57 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 2 2 3 141 15 11874675 11878820 ACTGACTTCACTCCAGGGA 60 11872507 11874573 TCATGTCAACCTTGCTAAAGTC 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 3 2 2 82 19 39070889 39070907 CACCATTGAGATGCTTCGG 59 39070950 39071888 CGTATTTGTTGAGGATTTGGAC 58 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000079572,ENSRNOT00000074330,ENSRNOT00000082983 3 3 3 112 X 104896791 104897676 TAGAACCTAGAGCTTACCTGG 58 104897750 104897768 TCCTCCTCTCATGTCATGC 59 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000074330 1 1 3 93 X 104882883 104883819 CTGCGTTCTGTATTCGTGG 59 104883875 104883894 TGAAACTAACAACAGGCCCA 60 NA Rattus norvegicus 81 Cstf2 ENSRNOG00000048025 ENSRNOT00000074330 3 1 3 118 X 104882883 104883819 CTGCGTTCTGTATTCGTGG 59 104884154 104884174 CCTGTCTCCCTATCGTATACC 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000070975 2 1 2 80 10 109618710 109618731 GTTATCATGATCCAAGGGACTG 59 109618772 109618792 TATGTCCTCTGCCTTGTGG 59 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699 2 1 2 82 10 71418796 71418815 CTTTGATTCGTTGCTGTCTC 58 71417663 71418754 CTGCATAATTGTCAAACTCCTC 58 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 1 2 2 80 2 243453783 243453803 TGAACACCAGAATCAACAGGA 60 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 2 2 2 80 3 113269951 113270153 GGGAGAACCTTCAGGTGAC 60 113270197 113270215 GCTGTTCATGTGTCTGCTG 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000005325 2 1 2 80 10 67478823 67478847 CTAACTTAATTTCCCTCGTAGGGA 60 67478766 67478789 TATTATGTAGGACTGGAGACATGG 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000085650 2 1 3 82 7 104700051 104700069 CTACGAGCACAGATTTGCC 59 104681975 104700005 CACATCGTTACCTTTCCCG 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000079169 1 1 2 84 14 115391892 115391913 CTAGTGAGACTAGGAAGAGGAG 58 115391956 115396012 TTGATCAGTGTGCTAACTGTG 59 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 2 2 2 80 8 6057030 6057049 TCAGAATCAAAGGCCAAGAG 58 6056214 6056990 CTGACGTAGATAATAGCTGCTC 58 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 3 2 2 80 X 122659259 122659279 AGTGGAGGATCGAGATTTCAG 59 122659321 122661382 AGCAGTTGCCTTCATAGGT 59 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000000651 3 1 2 80 20 9432836 9433322 GCGAAACAACATAAAGCGG 58 9433363 9433384 TTTCTTCAGATAAGCCTTCACC 59 NA Rattus norvegicus 81 Dhx40 ENSRNOG00000004549 ENSRNOT00000085712,ENSRNOT00000006926 2 2 2 85 10 74098625 74098648 CCATATTTGGATCCACCTAATGAG 59 74097088 74098582 TGACCACTCCTGTCAATAGC 60 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000013333 2 1 3 80 15 60743015 60743037 AGACCCTTACATTCCTCATCC 59 60742955 60742976 CGTGTATTCCTTCTTATGCTCC 59 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000017885 1 1 2 93 1 193131923 193132728 TTGATAAGAATGGCAATCCCAG 59 193132782 193132800 GAACTGAGAGGTTGTGCTG 59 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 2 3 3 81 10 3342561 3360967 CATATAAGACTGGTCTGATGTACTG 59 3361172 3361191 TATGCTGTCCTCCAGTTCAC 60 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 3 1 1 61 13 42262671 42262689 GGATTGTTCTGGCTTCCAG 59 42261320 42261341 TGAAATTCTTCACACTGGTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 1 2 2 85 17 58301184 58301202 TACTGTCAACCTTCCTCGC 59 58280156 58301137 ACTGCTGGTACTCAGATTGTC 60 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973 3 1 2 82 5 48303574 48303592 TGATGGCTCTTGTGGAGAG 59 48303636 48311955 ATACAAGTGACTTGGCTTGGA 60 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253 3 1 3 82 2 243736952 243736972 AAGTCCTCATCGAGATGACAG 59 243737016 243738141 GGACAATGGCTTCATGACC 59 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 2 2 2 94 8 71938657 71941332 ACAAGTGAGGACCTGAGGA 60 71941390 71941408 TAGGAGGTACTGCTCCTCC 60 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 1 2 2 80 3 2937959 2938773 CTTTGTACCTGAACAGGTGAC 59 2937899 2937917 TCTCCTTCCTCAACGACAG 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 3 2 2 80 3 2937957 2938770 TGTACCTGAACAGGTGACAG 59 2937896 2937914 GCATCTCCTTCCTCAACGA 60 NA Rattus norvegicus 81 Zswim2 ENSRNOG00000032579 ENSRNOT00000083015,ENSRNOT00000040303 3 2 2 81 3 71293343 71293362 CTTGGAAACCCACATGAGTG 59 71291323 71293302 TCAATAACACCCAGCATATGTG 59 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210 3 1 3 80 13 76454249 76454267 GACCCTGTGATACTACCGG 59 76444765 76454207 CACGATACTCTGCACTTTGAC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 94 4 14186527 14186545 CATACTGGTCAAGCCAGCT 60 14187108 14188060 TGGTCCCAGTCTCATTTAGC 60 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034075 3 1 2 158 18 61788784 61788804 TGTGCTGTACGTGCTATCC 60 61787124 61787142 GACACTCACAGTGGTAGCT 59 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262 1 1 2 82 10 66802710 66812216 TTGTACCAGGTGGTTAGCC 59 66812262 66812280 GGGTTGATGAACCTCAGGA 59 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245 2 1 2 80 5 137670292 137670386 CTCAGATCAAGAGTTGCAGG 58 137670429 137670447 TTCTTCGGCTTCTCTAGCA 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 3 2 5 83 1 100134799 100134915 CCCTTATATGGGAATTCCCTG 58 100134959 100134978 CTTTGTAGGCTTTGATGCAC 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000044408 1 2 6 80 4 154560370 154560391 CTCATTACCATACATTCCTGGG 58 154560432 154560602 TATCTCAGCGTGGTCTGAG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192 3 1 6 80 4 154627212 154627231 AACCAAGAGACACTGAAGAG 57 154627273 154627912 AACCCATGTCCACATATCTG 57 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 1 2 2 80 19 38602054 38607143 TTCTGTCCAGACTGGAAGAC 59 38607185 38607204 TGCACTGTGGGATACTTCAG 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 2 2 2 80 8 116327227 116327680 TCACAGAACTTAGCCAGATGG 60 116327721 116327740 CCCAGAAGATAACACCAGCT 60 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 1 2 2 80 11 72164733 72167898 AGCATTTCACAGCTATTGTCC 59 72164673 72164694 CAGACTGCTCTTCTATGATCTG 58 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163 2 1 2 81 3 3414750 3433544 TATGGCCTAGACAACATCCC 59 3414688 3414706 CAGGTGGCTTAATGTGCTC 59 NA Rattus norvegicus 81 Sept11 ENSRNOG00000002182 ENSRNOT00000067222,ENSRNOT00000091577 1 2 2 80 14 16378596 16378618 GACAGATGTTTGTCATGAGAGTG 60 16377749 16378559 GGTCAAACTTCTCATGAAGCTC 60 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627 2 1 2 81 19 26195318 26195338 TCTACTGCTCCTTTATCAGCT 58 26195379 26195471 ATTGAGAGCATGAAGCTACTC 58 NA Rattus norvegicus 81 Art3 ENSRNOG00000002256 ENSRNOT00000052035,ENSRNOT00000085525 1 2 2 83 14 17145160 17146239 AAAGCCTGAAGACAGAAATCG 59 17143385 17143403 GAAGGATGGGACTTCGGAC 60 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016,ENSRNOT00000072486 2 2 2 80 8 70624056 70624518 TGATGCCATAAAGAGCAACG 59 70624561 70624579 GAGTGGACAATGACTTCGG 58 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016 2 1 2 80 8 70618097 70618116 AGCTTTCAACAAACACGAGG 59 70618159 70619597 ATAGGCAGATCTGGTGTGG 59 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000090739 1 1 2 87 5 107733563 107747672 ATTGACAGGACATCCCTGAG 59 107747722 107747740 GTTCAGCCATTGGGATGTG 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 1 3 3 88 7 123134431 123134449 TCCTCACAGTGAAAGGTGG 59 123134501 123135291 AATTGTTGCCATGCCAGTG 60 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181 2 1 2 81 3 112713639 112716596 GGAACAGGGAGCAAGTAGG 60 112713576 112713594 GTGCTGAATTCTGGAGGGA 59 NA Rattus norvegicus 81 Thoc6 ENSRNOG00000003497 ENSRNOT00000078647 3 1 2 89 10 12989713 12989732 CACCACAGAAACATGTCACC 60 12989556 12989575 TAAGCTCCCACTCAGTTGC 60 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447 3 1 2 94 7 142147371 142147390 TTATGTCTGTCAGGAGTCGT 58 142146931 142147317 CATGGTACACATTTGAATCTCC 58 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936 3 1 2 80 1 47964769 47966417 AAGCAGTCAGGATGAACTG 58 47966460 47966479 AGAACTAGAATGGTGCTCTG 57 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 1 3 3 80 11 67232407 67235050 GGAGTGCATTAGGTATAACTTCC 59 67235090 67235108 GGGCTGCTGTTTATCTCCT 60 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907 1 1 2 112 X 85465766 85465784 AGCTACATCTGGTGACAGC 60 85467506 85483678 AGTTACCTCCTTGCATAGCA 59 NA Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971 3 1 2 110 19 37668249 37669152 TGGGAGCGATCTAGTTTGAC 60 37669225 37669243 CAGGGATCTGGTGTACCAC 60 NA InUTR Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000085694 3 1 3 68 10 13289722 13289740 CTGTCTGTCTGCTCTGGAG 60 13306128 13306147 CAATCTGGCACTTAGAAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 1 2 2 80 Y 154320 154340 CTCACTTTCTTCAACTGGCTG 60 154377 154494 CCACAAGTCATCCATGATTATCTC 60 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000034041 3 1 2 90 2 27258067 27266477 CAAACAAACTCAACATCAGTGC 59 27257998 27258017 GAATCAGCGTTCTCACTGAG 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033 3 1 2 80 7 143688623 143688642 CTGCTTTCCTAGGGAATCTG 58 143688683 143688967 CAGCGCTGATATTTAATCCTC 57 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000064264 3 1 2 106 7 97778407 97782674 CCACTCACAACGGAATTATAGTG 60 97782740 97782758 GAAGGAATCTCCTGAGCCA 59 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000080109 3 1 2 80 7 141389523 141389542 AGATGTTGCATGTCATCTGG 58 141387760 141389480 CATCCTTAGACACCTTGCC 58 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000083743 1 1 2 84 3 82614558 82637786 TTGGTTATGAGGTCTGGCG 60 82614492 82614510 TTGTTCATCTCGTGGTCCC 60 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 3 2 2 80 11 83913106 83913269 GAGAGCTCTTTAGGGAAATTACG 59 83913048 83913066 AGAGACCCAGGATCTCCAG 60 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000008503 2 1 2 83 X 135327984 135333589 GGTGCATATGCCTACAAGAC 59 135327920 135327938 CTCTTCTGGTGACAGTCCT 58 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000058422 3 1 2 80 11 81713671 81713690 TCACTTTATTTCTCAGCCCG 58 81712565 81712838 TTGCTGTTTCTGGAGTAGG 57 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025731 1 1 4 105 17 70703392 70703410 CACAGTCCTGAAACTGACG 59 70703583 70705169 CTTTGCATCCTCTGACCTC 58 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226 2 1 3 168 15 23667034 23667052 GTTTAAGGGCTGGAACGAG 59 23667184 23792834 GTTAATGATTCCCGGGCTG 59 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 3 1 1 94 16 21087811 21087829 ATGAGTTGGAGGATGACGC 60 21085632 21085651 GAAAGTCATCTTGTAGCGGC 59 NA DesignNoJunction Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 3 1 1 70 15 19196481 19196499 CTTCACCATGTGTTCCCTG 59 19197914 19197933 TATTCTCACTGAAGCAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 3 3 4 119 2 250224153 250224173 GGTTTCACTACATCAATGGCA 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000066928 2 1 4 86 15 1038527 1043618 CAAACAGAACAATCGAAGATGC 59 1047615 1047635 ATCCGTCTCATCTGTAAACCA 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000050733 2 1 4 80 12 783320 786742 TGACCCTTGTAAGGTCTGAG 59 786780 786803 TACCTAATTTCTCTTCTGGGTCTG 60 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015325 1 1 2 80 4 81238332 81239326 GGACCTGGAGGAAATTATGG 58 81238271 81238291 CATTGGACCGTAGTTAGAAGG 58 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 1 2 3 80 2 196637082 196637100 ATGATGATCCAGAGGCTGG 59 196637141 196638309 AGTTAGGAGAACTGGTTACCTG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636 1 1 3 60 9 50966941 50966963 GCCTGATGTTGACAAGATTAGAG 60 50968817 50968835 CTTCATCCTGTTCCAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 3 2 2 80 9 79957615 79957633 GAAGCTGACCTTTCTGGAG 58 79957677 79959234 TATGGCAAAGCTAACTCCC 57 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000078746 3 1 2 81 14 18838971 18838991 TCAAGAAGTTTGTCTCAACCC 59 18838422 18838928 TCAGCTGGACTTGTCACTC 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000008819,ENSRNOT00000066849 1 2 2 80 7 123262391 123264947 TATGAGCATCCAGTGTATCCAG 60 123264987 123265006 TAGAACACCACTGCCAAGAG 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322 2 1 2 152 1 84147765 84147783 CAGGTATCCCTCAACTGGC 60 84142698 84147226 CAAGGGACATAGAACCCGG 60 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000089456 2 1 2 80 1 256664564 256664583 AATGATGTAGTTGGGACGAC 58 256662124 256664523 CGAGGATGAGAAATCTTCCAC 59 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000003872 2 1 4 94 X 70459607 70459625 CAAGATATCGAGCACAGCA 58 70459140 70459325 TGGCGATGATAATTGTAGGG 58 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 3 2 3 83 X 120958987 120960415 AGCAAGTTTCAGCCATGAC 59 120960460 120960480 AGGTCATGGTAAGTACTCCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091285 2 1 10 90 7 117253868 117287887 AGTACAAAGATGAACGAGACC 58 117253489 117253507 TCACTGATGTGCCTTTGAG 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 1 7 10 80 7 117249346 117249364 TGAGCAAGCTACAGATGGA 58 117248583 117249302 GAATATCCTGCGACTGCAG 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859 1 1 3 80 9 90891944 90898155 ACGATTCCATTGTGACACC 58 90898197 90898217 AGAGACTAGCTCCATCTTCAG 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 1 2 2 80 6 111381613 111381631 ATCTGTAGTGTGCCTGGAG 59 111379847 111381570 CCCTGTGTACTTGAATGACC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000031988 1 1 5 143 8 73164585 73164611 CAACTATGTAGAGTCAGTTTCCC 59 73161438 73161456 AACATTGAAAGTCTCGGGC 59 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000019408 2 1 2 112 19 42800135 42800153 GAAGATGCAGAAGGACCCA 59 42781545 42800059 TGACTGGATGATGCTGTCC 60 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 2 2 2 80 10 14310671 14310691 AAGACCAGTGACATATTTGGG 58 14307364 14310629 CAAGACATGATCCTTGGGC 59 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000674 3 1 3 86 20 31268796 31275526 CAGACAAGGATGTGTTCCAC 59 31276852 31276873 GGTTTAAAGGGTCCTTTGTAGC 60 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 1 2 2 80 6 111077267 111077702 CACAATGACAGCCTAACCT 58 111077746 111077764 TTCTGCCTCCAAGTAAACC 57 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 2 2 2 80 1 188035923 188061851 GCCTAGTATTCACAGTGTTCG 59 188035863 188035881 AGGAATACTGGCCGATGAC 59 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000028780 1 1 2 134 2 198439030 198439415 ACTTTGGGTTCCAGTTGGT 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644 1 1 2 80 X 72687448 72687466 GAACAGCAGTTGATGGGTC 59 72687504 72688393 GATCATATTTGAGTATGGGTTGGAC 60 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644 2 1 2 81 X 72687448 72687466 GAACAGCAGTTGATGGGTC 59 72687506 72688394 GGATCATATTTGAGTATGGGTTGG 60 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312 2 1 2 81 2 84522999 84523018 ATTGGATCCAGAATTCTCGG 58 84520578 84522958 GCCATTCTTTCTAGATTCTGAC 57 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 1 2 2 60 16 21347706 21347725 TACCTCTTCCTCATGTTCCA 58 21347665 21347683 ACCAGCCTTTGATGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000088576,ENSRNOT00000013546 1 2 3 80 3 11230399 11230418 AGAACAAGGGCTACTCACTG 60 11230461 11234260 CCTCATCTGGAGACCTGAC 59 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566 2 1 7 81 9 43751384 43751402 AATGTACATCCAGCAAGCC 58 43751446 43761317 CAATTTATGCTCCTGCAGTG 58 NA Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 2 2 2 81 9 80154621 80155296 CTACAAGAGAAAGCAGTGCA 58 80154559 80154579 CAGCTTCATCCCATACTTGTC 59 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 1 2 2 82 8 50223421 50223762 GTTTATGAAGAAAGCCCAGGA 58 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000067886 3 1 4 97 16 23758972 23758991 CTGAACATCGCTCATATCCC 58 23759049 23759396 ACCTAAACTCTCAAAGTCGAG 58 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629 2 1 4 81 16 23448652 23487945 CGGATGCTAGTGATCATGGA 60 23487986 23488007 TCTTCCATGGTCCCATATTCTG 60 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 3 1 1 107 7 140450502 140450520 TCTTGGATTCCAGGGAAGC 59 140449623 140449641 ATTTGCACTTCCGCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000016175,ENSRNOT00000035722 2 2 4 80 4 85701167 85703850 TCCACCATTACTCTACGGC 59 85703892 85703912 GAAGGCGAATACTGTGTAGTG 59 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000074005 1 1 3 119 19 53496530 53496549 GTAACTGTGTCCCTCCTCTC 59 53496030 53496448 TGAAGAGTCCATCCACCAC 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 3 2 2 80 17 77686404 77686424 CGCTAATCAAGTCTATCTGGG 58 77680013 77686363 GGATCTTGGACTTACTCTGC 58 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 1 6 7 80 5 166101436 166116419 ACTCGACCAGTATTATCAACCC 60 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000085647 3 1 3 80 3 117435009 117435553 GTCAGAGGAGGTCTTGGAG 59 117435595 117435615 TATTGCAGAAGTTGACAACCC 59 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196 3 1 2 91 3 148438976 148448816 CGACAGAAGAGTCAAACTTCC 59 148454338 148454357 ATAAGCGTGGTCTTGAATCG 59 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382 1 1 2 80 18 77251056 77251075 ATGTCTGGGAGATGGAAGC 59 77247236 77247254 TGCGGAAAGGTGGTATCTC 60 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549 3 1 2 80 4 147812000 147812018 GAGATGTACATCTCGGCAG 58 147812059 147814072 ATCTATCAACATGTCAACCCAG 58 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000033408 2 1 2 80 1 47985717 47985735 CTGTCATGGGAGTAGGACC 59 47989490 47991229 ACACGTCAACATCCTCCAG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000045163 2 1 10 81 9 95275501 95275519 CTTCATGCCCAACATGGTC 59 95275560 95298739 GACATAGGCTTCAAATTCCTGAG 60 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049 2 1 3 96 9 81615401 81628372 TCTTCCGAATCGGGTACAG 59 81628432 81628450 CCTTTGGGAAAGCGATTCC 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 1 2 2 80 3 60089324 60089342 CTCTATGGCGTCTTCCCTG 60 60088429 60089283 TGAGGTTATGATCTCCACTTCC 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716 2 1 2 81 6 124598864 124598888 GTATTCTTTCTGTGGGACTATTGAG 59 124583640 124598826 GCTCATTCCCTTGTCATGTC 59 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 1 2 2 80 1 142973167 142973185 CATCTTCTTCAGCTGCGTC 59 142973228 142977077 ATCAACCAGGCAATCTTCAG 58 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711 3 1 2 81 12 22102865 22103540 TCTACTTCAAGCCAGTCTGTC 60 22103583 22103601 TGGATGAATGGGAAGGAGG 59 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000033806 3 1 2 84 14 20483490 20488300 CGACAACGACGATTCTGAC 59 20483424 20483442 GAAAGGTTGCTGTTCCGTG 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000087088 1 1 7 80 2 186160509 186160529 CCTCAGCTGCTAAGTATTCTG 58 186154353 186160468 GAGTTCCATTCACTGAAGCT 58 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822 2 1 2 80 9 92381009 92404989 GACTCAATAGGAGGAAGAAGC 58 92380949 92380967 AGTATTGGCTCTGTCTGGA 58 NA Rattus norvegicus 81 Smcr8 ENSRNOG00000005165 ENSRNOT00000079375,ENSRNOT00000006984 3 2 2 80 10 47021784 47025671 GCTTATTGGCCTACAAAGAGTG 60 47025711 47025730 CTTGTATAGCGGCTGTAACG 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 3 2 2 84 17 87933920 87950482 CTGGCTGGAAAGAATGTTCTC 59 87932529 87932548 ATTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 2 2 2 80 12 47957905 47958014 CTCAACCTGTTCAAGACAACC 60 47957845 47957864 CTGCAGGTAGTTCTCATGGA 59 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754 2 1 2 80 3 5470399 5472256 AGCATGATGACGGTAGTCTG 60 5470338 5470356 AGATCATCAGAGCTGTGCC 60 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000077347 2 1 2 80 10 10828698 10828939 GTCCATGAGATGGGACAGG 60 10828981 10829001 CCTCCATTTCTTCCCATTCAG 59 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298 3 1 2 160 10 10828172 10828190 GTCAGCTCGATTGAAGCAG 59 10828700 10828947 GCATAATGCCCATCTCATGG 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019 2 1 10 82 15 32614112 32801000 CTACTTCTGTGCTGCACAC 59 32801043 32801064 TGGGTTTAATAGTGAGTCTGGT 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000090355 2 1 2 118 3 119383803 119384554 AGTTGCCAGTAGTTATCAGGG 60 119379338 119383723 TGCAATCAACAGACCTGGA 59 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 3 2 2 80 1 79950014 79950034 TCTGGACAAGTATGAAGACTG 57 79950073 79950510 GTAAAGATCCCATCTTTCTGGT 58 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 3 3 3 81 6 127612422 127612440 CAAGATGCAGCATCTGGAG 59 127611486 127612377 AATGGCTGACCTTGTTTGC 59 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391 3 1 2 86 13 48446461 48446577 GATGGAGAATATGCGGTGG 58 48446627 48446645 GCTGAGGGTGTATGAAACC 58 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 2 2 2 81 7 53642211 53645187 CTTTCTGTGCATGGTTTGC 58 53645230 53645250 GCATGATTTGCAGTAGATCTC 57 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000057989 2 1 2 118 4 100424263 100424703 CTTTGTCCTCAAAGAGCTGG 59 100424164 100424182 CTCGACTGTAGTCCCACAC 60 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000078495 1 1 3 80 4 158244432 158244451 AGCGAGATGAATTTGAGCAC 59 158244491 158334052 CTGCTTTGATCTCGTACATCTC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 1 3 3 80 7 28740027 28740361 ACTCGGTCCAGTTATCCTC 58 28741973 28741991 TTCACTAATGGCAGACCAC 58 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 3 2 2 81 7 125848025 125849366 CAACCTAGGCAACATTCTGC 60 125849406 125849428 GATAAGGACATTGTTCTTCCCTG 59 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000072803 2 1 2 80 17 90205181 90217423 AACGTGCAGATAAATACTGAGG 59 90205122 90205141 GTCCTCAGGAATCTTACGGT 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000079836 2 1 2 81 12 12761978 12761996 TCAAGAACTGGTGGAAGGT 59 12756944 12761938 CTTACTCTCAGAATACACCTTCAG 59 NA Rattus norvegicus 81 LOC361990 ENSRNOG00000012760 ENSRNOT00000017561,ENSRNOT00000010455 3 2 2 99 2 189893199 189896029 CTTAAGCAGAGCTTAAAGCAG 57 189893120 189893138 TTCTTCCTCCAATTGCTCC 57 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000090393 1 1 2 120 5 118491160 118491178 TCCCTAGTACCATGCTCCT 59 118487304 118489835 TCCATGATGCTTTGGGAGG 60 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 2 2 2 80 1 221743902 221743923 GAAGATGAACCTCTTCATGCTC 59 221743960 221744085 GATGTTTCTGATCTGTTCCACTG 60 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 1 2 2 93 3 119676286 119676304 ATGAGGTCAAGTCAGTGGC 60 119676111 119676231 TCTTCATCAACTTCCCAGACC 60 NA Rattus norvegicus 81 Ppig ENSRNOG00000007673 ENSRNOT00000010216,ENSRNOT00000086584 3 2 2 80 3 55971368 55971387 GAGGGAAGGATACAAATGGC 58 55972664 55972777 CAAAGACAACATGATGCCCA 59 NA Rattus norvegicus 81 Fmo9 ENSRNOG00000025119 ENSRNOT00000076886,ENSRNOT00000029706 2 2 2 80 13 84789727 84789747 AGTCTTTGATGGGATTCTGGT 59 84787907 84789687 TTCTCAATACCTGGGAAGGAC 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 3 2 3 85 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179839 143179857 GGGTCATGAGAACAAGCCT 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000079738,ENSRNOT00000080419 1 5 12 90 20 3352687 3352705 CAACTTGCCATTGACCGAC 60 3352759 3358165 AGTTGTTCACCTGTGGGAC 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079738,ENSRNOT00000080419 3 4 12 80 20 3352489 3352677 ATGTTACAGAAAGAGCGAGTG 59 3352718 3352737 CTTGTTCAGGAACTTGAGCA 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000090922 2 1 2 80 X 118200545 118265406 CTGTCCTTAGGAGCAATTCTG 59 118289380 118289401 CACATCTAGTGAAATCCAGACG 59 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734 2 1 2 83 4 123489644 123502739 CTCAACTATTTCCAGCACTGG 59 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000086473 1 1 2 152 4 83714014 83746159 TCAGTGATGTCCATGAGGC 60 83746273 83751863 CCTTTCCATAGGCATCAAGAC 59 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000019577 1 1 2 82 19 42163243 42180312 AAGATGAGAACAAGAAGCAAGC 60 42163182 42163203 GAGGTGATACTGCTTATTGGAC 59 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000019577 3 1 2 84 19 42163243 42180312 AAGATGAGAACAAGAAGCAAGC 60 42163180 42163201 CTGAGGTGATACTGCTTATTGG 59 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 2 2 2 80 3 56063603 56067503 CCACACCCAGAATATGGAC 58 56067546 56067565 CTCTGTGATCGTAGTCTGTC 57 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 1 2 3 82 12 22751092 22751110 ACTGTTACAGACTGAGCCC 59 22750797 22751048 CCAGTCCATCTTTCTTCATGG 59 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 2 3 3 80 13 85398134 85398154 ACTCAAAGAAATCACCGAAGG 59 85397250 85398092 ACTGTCTCCTCTTTCCGTG 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 3 2 3 102 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865898 120867397 AAGGATATGTCCGATAAACAGC 58 NA Rattus norvegicus 81 Dbndd1 ENSRNOG00000026974 ENSRNOT00000014090 3 1 1 69 19 56306599 56306617 ATCCCAATACCAGCACCAG 60 56305944 56305962 GAGAGGAGACACTGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337 1 1 3 80 2 144917460 144922288 TTCTGTAATAGCACTGGACC 57 144922329 144922349 CAATACATTCCTGGTTGTTGG 58 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 3 2 3 80 X 72513541 72514991 CTGTGCCATCAGAATCCAG 58 72513479 72513499 ATACACATTATCTCGGACCCA 59 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000050037 2 1 4 98 7 51431435 51432796 CTTACCATAGAAGTACCTCAAATCG 59 51431361 51431379 TTGGAGCAACAGGAATGGT 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000006773 2 2 4 83 7 51431868 51431886 AAAGCTTCCTTTCCAGCAC 59 51431436 51431823 GATTTGAGGTACTGCTCTGTG 59 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 2 3 3 80 10 109712028 109712145 CTGTCATGTCTGCCAAAGG 59 109712188 109712207 GCACTGGTCACTATAGAGCT 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 3 3 3 80 2 208580954 208583458 ATTCATACCGAGCTCATGC 58 208583500 208583520 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054,ENSRNOT00000073722 3 2 2 105 15 29208649 29208774 TTCTACTCGGAAGGACTCG 58 29208842 29208861 CTTGTGGCTGAATAAGTGCA 59 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 1 2 2 80 1 147808340 147808358 GGACAGAGACAACAAGCAC 59 147808402 147884083 CCTGGACTTTAGCTGTGAC 58 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 2 2 2 80 10 109976655 109976993 CAAAGAATGATTCTGTTGGCTC 58 109976596 109976616 CTTGTCAATCTCTGGGAAGAC 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 3 2 3 80 18 72571604 72593010 CATACCAAGCACTTGCTCTG 59 72593052 72593071 CTGTAAAGGCCTGTTGTGTC 59 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000065720 1 1 2 80 9 96905260 96905278 CCTACTCAGTCTCCAGTGC 59 96905321 96970468 TTTCTTCTTGCTCACTGCTG 59 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811 3 1 2 82 6 33215883 33223885 CACAGCCAATAATGGGCTG 59 33223930 33223949 AGCCTTCATTGTAGAGGCAG 60 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401 2 1 2 82 11 89557313 89570161 GTCCACAGGAGTTAAAGTTCC 59 89570205 89570223 CCGTACCATCACCTACTCC 59 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922 1 1 2 80 5 124442465 124475899 CCACAATGGAAGAGGAAGGA 60 124475939 124475960 CTGAAAGAGGTACAGCATTGAG 59 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403 1 1 2 93 18 61259243 61308859 TCTTCCACTCCAAACATCTG 58 61308915 61308933 TCTGGTATGTCAAACGCTG 58 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 2 1 1 66 12 23760205 23760224 GATACCATACGGTTCACCAC 58 23760367 23760385 CTACTAGCCTCAGCCTACC 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc101 ENSRNOG00000019245 ENSRNOT00000084824,ENSRNOT00000026146 3 2 2 84 1 198089529 198091652 CAAGCAAACCCAGGAAGAG 59 198091700 198091718 GTTCTCTGTCTGCATTCGC 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085 2 1 2 81 4 85141717 85141831 GCAGATGACAAATGCCTGG 60 85141654 85141672 GGTTGGTGAACTGGAAGTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 3 3 9 81 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000059763 1 1 3 80 14 34561661 34561680 CCCATTCTTCCTGCTTTGC 60 34561599 34561618 GAAGACTATGGACCCAGAGG 59 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000077362 2 1 2 80 2 189871159 189871177 AGACCTCCTTCAGTGAAGC 59 189871219 189871552 AAGAAAGGATAGAAGCCTGCT 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 2 4 4 80 10 18571047 18571819 AAGTTCGAGGACTTTGTGAC 58 18570986 18571006 CAAATTAAACGTCCACCTCAG 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645 1 1 2 85 1 267437789 267438615 AAGGACCTAAAGACCGTGG 59 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Aph1a ENSRNOG00000023816 ENSRNOT00000081383,ENSRNOT00000056289 1 2 2 80 2 198007496 198007514 GATGAGGGCTTAGCATCAC 58 198007557 198007804 GGACAGACCAGAAACATAGG 58 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879 1 1 2 80 14 36687229 36718154 CCTCCATCTGTAATATGGGCA 60 36718193 36718214 AGTGTTCATTGATCGGAAACTG 59 NA Rattus norvegicus 81 Pcbp2 ENSRNOG00000036852 ENSRNOT00000055302 1 1 2 125 7 144087723 144087741 CAAACAGATCTGCGTGGTC 59 144088687 144091517 ATGGTATAGGCCTGACCAC 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000085788 2 1 2 80 14 83208897 83208917 AGACTGTGACACAAGTATTCC 58 83207390 83208855 CAAGAGTCACATCCTTGGG 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000085708 2 1 2 81 6 23277651 23277673 GAGATGGAACGGATATGACTC 58 23276775 23276794 TTTACAGCTGTCTCAACGTC 58 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754 3 1 2 83 19 55904806 55904824 GAAAGGCCTCAAGTTGACC 59 55904869 55907875 TTAGCAGTTCCACTGAATCCA 60 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 3 1 1 184 10 109786347 109786365 GAGTTTCCACAGGTTCCCA 60 109786588 109786606 TACACTGGAAAGTCCCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 3 2 2 81 7 12269769 12270473 GTACAGGAGACACTCCTGTC 59 12269707 12269725 TCCTCGTCAAATGACAGCT 59 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 1 2 2 180 3 120076233 120076777 GGAAGCAATGAAGGCATCG 60 120032294 120076089 ACTGTCACTGCTGTCTGAG 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 1 4 4 80 1 250692825 250693531 AATCAGCAAGTGCTGAAGG 59 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 2 2 2 80 12 23607119 23607375 GGAATCCTTTCTGAAGGTGG 58 23607058 23607077 TTCTCCTCGAACACTCTGTC 59 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000047324 2 1 2 88 6 127650075 127650093 GACCGGGTCAATGAATTCC 59 127649639 127650023 AAATCCAACAGACTCCACG 58 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230,ENSRNOT00000059814 2 2 3 80 14 34145112 34145135 CTCTTTCCTAAGCACTACATTAGG 59 34144971 34145074 TCAGGTTCACAGCTAATGCA 60 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000086409 2 1 2 83 3 140024119 140024137 CAGTATAGCCCTCGCAGTC 60 140024184 140045044 CTCACCATGCTGAGAATGC 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880 2 1 2 171 1 253242741 253247463 CACTCAAGACATCAAGTAAGGT 58 253247592 253250176 AGTATAAGCCCTTTCTTTGCTG 59 NA Rattus norvegicus 81 Mib1 ENSRNOG00000013281 ENSRNOT00000018025,ENSRNOT00000092027 1 2 2 80 18 2071654 2071673 ATGGTTATACTGCCTTGCAC 58 2071716 2072124 TTGCATTTCCCTGATGCAC 59 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 2 2 2 80 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781644 2781893 AAAGGAAATCGAGAAGTCCAC 58 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 2 2 2 80 4 57038555 57039560 GACTATGTGCTATGCCAAGC 59 57039599 57039621 CCGATTCTTGATCTCACAATCAG 60 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000079254,ENSRNOT00000013410 1 2 4 126 2 118563168 118565896 GTACATGCAGAGTGTATGGAC 59 118565984 118566002 CAGGCAAGGGTACTGAGAG 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 2 2 4 80 X 115565310 115582387 TCTATTGTACTTGCAGGGTCC 60 115582429 115582447 GCAGAATCTTGGCACTTCC 59 NA Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 3 2 2 80 X 134746153 134746171 GTTGCATGGGAAGGAACAG 59 134746212 134749149 GTTTCTTCTGCTTCTTGAACAC 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 2 2 3 98 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563950 82563969 TCAAGATAAGGACACAGGCG 60 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000067118 2 1 2 134 6 136412014 136412032 GAATTCCAAGCTCCAGCAG 59 136409123 136411916 CATTCACACGGTTCAGGTG 59 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000085670 2 1 3 80 2 250763230 250765227 TTGTCGGATATGACAGTTGGA 59 250763170 250763189 CTGTCCACAGGTACTGTACC 60 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 1 3 3 80 X 77284303 77290479 CTACTACTCCTACTGTAGCACC 59 77284244 77284262 TTTGGCTTGTCACTGACAC 59 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 3 2 2 80 7 50173735 50173755 AACTGACTGTTGTCATTCTGG 59 50090474 50173695 GAATCTTCACGTAGGGATCAG 58 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 3 2 2 80 4 163220743 163220762 GGTCTATCTCGCAATCAGAG 58 163217927 163220701 TCTGACTTGAAACGAGTTGG 58 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000080207,ENSRNOT00000046700 2 2 3 80 2 123348670 123348688 AAATGCAGGAGGAGAAGAC 57 123345081 123348628 CTGAGTGAAGAGGTTTAACCT 57 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 2 3 3 80 4 162017579 162017597 AGTCTAGCTGACTGTGGTG 59 162017175 162017537 CAAGTTCCGTAGGAATCTCAG 58 NA Rattus norvegicus 81 Dapk1 ENSRNOG00000018198 ENSRNOT00000066950,ENSRNOT00000080750 3 2 2 80 17 4338153 4339219 GGATGTTAAAGACAAGTCTGGAG 59 4338095 4338116 CACAAGAGTTGAACCACATCTG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000084230 3 1 7 80 1 83655001 83655020 AAAGAGTTCCTGTCACTGCT 59 83655063 83657502 CATCTCATAGAGCCTGCCC 60 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000029842 1 1 2 80 11 72805392 72807392 AAACTGAAACGATTAGGCAGG 59 72805332 72805350 ATAGATCTGCAAGGGTGGT 58 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 2 2 2 80 4 57561513 57561534 GCAAACATGAGGTTACAATCCT 59 57560184 57561475 CTTCATATGGTGTTCCTTGTGG 59 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 3 2 2 82 1 198458188 198458208 TCAGCTTATATTTCGGACCAC 58 198456844 198458144 TCACCAGTACCTTTGTTGC 58 NA Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 1 2 2 83 6 137210176 137210194 AACTCAAAGTCCACGTGAG 58 137210241 137212039 TGGTTCTTTCGAAGACCTC 57 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760 2 1 2 121 3 14990816 15037154 CAATGAGAGGTCCCATCTG 57 15037239 15037257 GCTTGATAAGCACCTCCTC 58 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000024900 1 1 3 130 2 199893172 199893190 GAGAGTATCCCAGCTGGAG 59 199891634 199891654 ATATGACAGTTCGGGCCTG 60 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 1 2 2 80 20 32247687 32253324 ACACATAAAGCAGAACGCA 58 32247625 32247644 TCTCTGAAGCCTTTCAAGGT 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000003928 2 1 3 80 13 72281630 72282644 GAACAATTCAGGTATTCTAGAGGG 59 72281573 72281592 TTACATTCATAACCAGCCGG 58 NA Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000008359 3 1 2 82 6 33841512 33841530 TCTTGGCTTTGGAAGTGGT 60 33841575 33845675 CAGAACTGCCAACTGATGAG 59 NA Rattus norvegicus 81 Galnt7 ENSRNOG00000012037 ENSRNOT00000084707,ENSRNOT00000016474 1 2 2 80 16 36001826 36032281 CCAAGAAGAATGCAAGTATTGG 58 36032319 36032340 CATCCTTCATTATGGAAGACGA 58 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 2 2 2 80 10 47985106 47985125 CCGTGATATACACAGATGCC 58 47983788 47985065 TCTGGTTGAAAGCTTTGACTG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000021858 3 1 2 85 1 177154012 177154031 ACAAAGTCAAGTACATGGCC 59 177154078 177166146 CAGGGATTCCTGTTTCAAGG 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603 3 1 2 83 9 92628693 92628713 ATCACAGGACTGTACAAAGGA 59 92628757 92633478 TGTAGGATGCTTCCCTAACG 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 2 4 4 106 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831505 215831524 CACAGTATGTCTCCAGGAGG 59 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682 2 1 3 96 13 52677850 52677868 GAGAACAGGAGGAAGGCTG 60 52677928 52679429 TCTTCCGCTCTGTCTTCTG 59 NA Rattus norvegicus 81 LOC100910316 ENSRNOG00000047573 ENSRNOT00000072396 1 1 2 80 5 129257652 129257927 TACGATTGTGAAGGGTCTCC 59 129257970 129257988 GGTAAGGAAGAGGTCCAGG 59 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000080379 3 1 2 86 3 123072605 123073058 CATCCTTCATTGATCCATACAGG 59 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 1 2 2 80 18 15674293 15675028 ACTACACATAGAGTCGGGAG 58 15674232 15674251 CATTCACGTTTGTACCTCCT 58 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242 2 1 2 83 12 31353795 31355917 AGACTCAGGGTGAAATGGT 58 31355964 31355982 TAGTCTCTTCCTTGGCGTG 59 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800 3 1 2 80 15 39658029 39658047 ATCAAGCGAGGAATCACTG 58 39658089 39663370 TTCTTCTAAATCCTCTGCGTC 58 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 1 3 3 80 5 173479469 173479487 CCAGAGCATTGAGGATGAC 58 173478492 173479425 TGGACATATCTCTGCACCA 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 2 3 3 80 17 6187161 6187183 CAAGAATGAATATGGGAAGGACG 60 6177174 6187124 GGGTTTGTCTCATAGTCAACTC 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 3 3 3 80 17 6189448 6203238 ATTCCCAATTGTGGTCTGC 58 6189386 6189405 GGAAATGGTCACAGACTTCC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 2 3 5 80 2 1493436 1494357 CAGCCAAGGATAAAGATGGA 57 1489834 1489853 CAATCAGCTCTGACTCACTC 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895 3 2 4 97 20 3827468 3827601 CATCTTTGATCGGGTGCTG 59 3827661 3827680 TAAACAGTATGATTGCCCGC 59 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339 2 1 2 97 10 104540028 104540132 AAGAAGAAAGACTGCCTCCC 60 104540194 104540212 TATTTCCAGCAGAGCAGCA 59 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000001215 3 1 2 80 12 30207487 30210422 CGGATATTACTTCAAGACGCT 58 30210463 30210482 CTGGTATTGCTCACAAAGGT 58 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645 3 1 2 80 12 30223293 30223572 ATGTAGGCCAGGATAGTGTC 59 30223615 30223633 TGCATAGTTCATGTGCACG 59 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 3 2 2 80 16 48960073 48960091 ACAATGATCTGGTGGAACG 58 48955497 48960030 TCACTCTTCCAAGATCCTCC 59 NA Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 1 1 1 69 1 213745589 213745607 TACCTGAATCTGTGCTGCC 60 213744990 213745008 CTACCTTCTTGTCTCGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 3 2 5 83 13 55114476 55115291 AGATATCTCCTCAGGTGCC 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 1 2 2 80 15 27850698 27851130 AAAGAAAGGCTTGGATTGGG 59 27851170 27851191 AGTTTGTTCTCTGAGCATTTGG 60 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 2 2 2 80 16 47891486 47893208 CTCTGTAACCATGACGCTG 58 47893249 47893270 TCCATAGAAGTCAAGAACACCT 59 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000082042 2 1 2 83 17 10052067 10052088 AGAGATACCTAGCAATCCATGG 59 10050167 10052023 CTTTGCTTCTGCTGCTCTG 60 NA Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 1 1 1 65 11 87235290 87235308 TCACATCTCTGGAGCTGAG 59 87222246 87222264 TTCTCACCCATGAAGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000085799 3 1 3 93 10 70566558 70580550 GATAGCCTGGTAGGACAGTC 59 70580606 70580624 CATTCAGACCACTGCTGAC 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286,ENSRNOT00000041442 1 3 3 60 6 100002676 100002694 GACTCAGTCCCATCACTCC 59 99987018 99987038 TTGCTTTGTCTAGGATTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 2 2 2 80 7 130124240 130124452 GGAAATGACTACATCGACCAG 59 130124180 130124200 GGATATCTTTGCCAGAACCTC 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000077539 1 1 3 80 4 164439014 164439037 TCAGGACCACATTATTGACAG 58 164438953 164438972 GTGTTGTCAATCCATGACCA 59 NA Rattus norvegicus 81 Grm1 ENSRNOG00000014290 ENSRNOT00000019319 1 1 2 118 1 4786017 4786035 ACGACCTCTGATGTTGTCC 59 4756913 4785936 CCGTTAGAATTGGCATTCCC 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 1 2 2 107 7 49386173 49531755 GGACAGAGATGTTGCAAGAG 59 49531825 49531843 AACTCACTCTGAAGCACCT 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079640,ENSRNOT00000091697 2 2 5 87 3 8582415 8582434 AGATGAGATTGAAGCCTGGA 59 8582483 8582828 CTTGGAAAGCTGGATGTTGG 60 NA Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 1 2 2 80 10 13163199 13166144 CCTTTCGAGCAGATGACAC 59 13163137 13163156 GCTTCATCACATCTGGAAGC 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 1 2 3 80 17 9838226 9838351 ATTGTCTGTTATGACCTCACC 58 9838393 9838411 CTCTTCTAAACTGCGGAGC 58 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084322 2 1 5 92 14 71629417 71629435 CATGCTCTTACTTCCGGCT 60 71629486 71631483 GCTGATGGTTCATCATATACATCC 60 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822 3 1 2 155 6 55677876 55686720 CGCTCCAGTTGAAATCGTG 60 55686839 55687931 GAATTGGCATTCGCTTCCT 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968 3 1 2 102 18 27422864 27422882 ACAAGCTGCTGAGTACTGG 60 27414130 27422800 ACTGATACCCAGTTCTGATCC 59 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 3 2 2 90 8 49096433 49096724 GACATGATCTGTGCCATCC 58 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000079824 3 1 3 103 6 103379372 103380870 CACTTTGACCGGAAGAAGAC 59 103378141 103378159 ATGATCCGGGCAAATTCTG 58 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 1 2 2 80 4 133120717 133121614 GGAAGAAATAGGTGCTTCCG 59 133120656 133120675 GTCTGCTCAATTTCCCAGTC 59 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000074951 1 1 3 96 4 61818982 61819000 GGTGAAGAAAGCCTTCCAG 59 61819058 61820245 ATTTCCAGACTGAAATCCCTG 58 NA Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 1 1 1 80 10 14021922 14021940 GTCCTGGACTTCAGCAGAG 60 14021278 14021296 ATGATTTGCTGCAGGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 2 2 2 60 10 103409096 103409116 TTTCTATGGATGAACCAGCCT 59 103411691 103411710 CCATTGTAGCCACTGTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894,ENSRNOT00000091565 3 2 2 64 9 16538281 16538300 GAAGAAGCTTCCACAGACAG 59 16538891 16538909 AGTACCTGACGTTGTGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 3 2 2 80 7 37184564 37184582 GAGTTGCAAAGAAAGCTGG 58 37184624 37185783 GTGTTTGATCTGTAGGGACTG 59 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270,ENSRNOT00000015327 1 2 2 82 2 95021080 95025900 CGGGAACTTACTAAGGTGGA 59 95025945 95025963 TTGATCTCCGCAAGATGCT 60 NA Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 3 2 2 83 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567344 49567363 AGTAGTCGTTGTTGACATGC 59 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 3 2 2 80 3 118594312 118597333 CTTTGTTGGAAATGCACGG 58 118594250 118594268 ATGACTGATGTCACTGCTG 58 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357 3 1 2 80 3 118633304 118635208 GGAGACAAACAAGAAACTGC 58 118633243 118633262 TATCACAAACACAGCATCCA 58 NA Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 1 2 2 80 10 109969453 109969559 CAATGTCATCAAGGTCAGTGTC 60 109969600 109969618 TCTGGAGTAGACTCAGCCT 59 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040 1 1 2 80 13 56837131 56843508 CATGCAAAGGTATCTTTGGAG 57 56837071 56837089 TTAAAGGCCTCCTGTTGAG 57 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000068185 2 1 2 92 4 165621097 165621115 TAGAAGGGAGTCGCTATGC 59 165612402 165621042 CAATCTCACCAGCATTACGG 59 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000091675 2 1 2 86 11 87678480 87678498 TTAGATCCTGTACAGGCCG 59 87678548 87682446 TGTAGTCAGCCTAGGAAGC 59 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 2 2 2 80 14 3251055 3251436 GGATTCATCAGAGATCCCTG 57 3250994 3251013 TGCACATAAGATCAACAGCA 58 NA Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824 2 1 2 80 14 3248349 3248849 CTGAGTACTGACTCAGTACTGG 59 3248290 3248308 GGTTGGTGGTTTGTAACGT 59 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 3 2 3 80 10 11075536 11075557 TTTGGAGAGTTCTCATCTTCTC 58 11073739 11075497 TGTCAACTCCATGATGTACTC 58 NA Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 3 2 2 83 6 136393197 136394309 CTTGTAAGCGGAGCTACCT 59 136394355 136394374 CTGGTTGTTGGAAAGACGAC 60 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000066934 3 1 2 82 9 93239042 93239061 TGAATCCGATGATGACGAGG 60 93265896 93265915 AGAGTTCTCCAAGCTGGTC 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000080335 1 1 3 80 13 56607262 56607280 GATCCAGGGTTCAGATGCA 60 56610493 56612911 ACCTTCTCCTTCTCTTCCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 1 1 18 60 1 43475882 43475902 AACTTCCTGGTCATGTATGTG 58 43527510 43527528 AATGGAGCAGTTTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 9 18 60 1 43508743 43508764 ATACAGTGGATCGAACTAACCA 59 43527513 43527531 GGCAATGGAGCAGTTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389 3 1 18 60 1 43454858 43454876 ACAGAGCTTGAAGGATGGG 59 43475503 43475523 TCCGTCAGATTCTTACATGGA 59 NA DesignNoJunction Rattus norvegicus 81 Wdr36 ENSRNOG00000027355 ENSRNOT00000031530,ENSRNOT00000075283 2 2 2 80 18 25649071 25650398 CACAATTTGCTGCTGAGGA 59 25650441 25650460 TTGAGCAAGACAGCTTACCT 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 2 3 3 80 7 12665248 12665348 GCTTCAAGTTCTTCCAGAAGG 59 12665188 12665206 CAATTAGTGCCTGCACTGC 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 3 1 2 102 16 3759665 3759684 ACTTGGTTTCAGAAGCACAG 59 3759120 3759606 CTTCTTTAACTCTGGGTTTATCCTG 60 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660 3 1 2 95 9 17106859 17106877 TCAAGGACAAATTCCGCAG 59 17107140 17108130 CCTTCTTGATCAGTGCGTG 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 1 4 4 113 18 56316004 56318428 GTACTGGAGCCGATATGTCC 60 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000078969 3 1 2 81 18 27634684 27635005 CGTGAAGGAATATGGTAAACGG 60 27635048 27635072 GACAGTCATTATATCCGTAAGTGTC 59 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162 3 1 2 80 13 55540046 55547016 AAGTGCAGATCCTTAGGTGG 60 55539985 55540003 TCCATGAGGTACTGAGGGA 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770 1 1 2 105 19 10340776 10340794 CTCCCTCAAGCTGATCCTG 60 10340430 10340708 CTTATGCAGCCTCTCCTCTC 60 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 2 3 3 80 1 214154583 214155040 AGAAGCTTCAGTTGGAATACTG 59 214154524 214154542 AGTCAGGTTTCACCCTGAG 59 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 1 2 2 80 4 155665670 155665689 CATTCGACACAACCTTTCCC 60 155665732 155667187 CAATAGGAGCCCTTCCCAG 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000088724 2 1 4 80 13 70229131 70229150 GCATCAACAGAGACAAGCAC 60 70229189 70236257 CAAGGTCATATTTCTCCATGCTG 60 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 1 2 2 80 1 280146539 280150076 AGAAGCAGATAGCAGTAGTCC 59 280146479 280146498 CTGGATACAGAACCCAACAC 58 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 1 2 2 94 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579103 12579951 ACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 3 2 2 95 7 12580009 12580027 TCAACAAGAAGCTGTGGAG 58 12579103 12579950 ACTTCATGTACTGTGTCCG 57 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 2 3 3 80 12 37686734 37688472 TTGTAGTCAAGTGCCACCA 59 37686672 37686691 CATCCACTTTCTCCTGGAGG 60 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 3 3 3 80 12 37686735 37688474 CATTGTAGTCAAGTGCCACC 59 37686674 37686692 TCCACTTTCTCCTGGAGGA 60 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 2 2 3 80 3 121835299 121835321 TGCTATAGGGAAACGGAGTC 59 121831731 121831749 AAGTGAGCCATAGCTTGCA 60 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122 3 1 2 82 10 70719632 70719654 GAAGGAATTCCTGTAATCAGTGC 60 70719690 70721587 GATCATTTCTGTAGTCATTTCTCCC 60 NA Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 2 2 2 81 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692905 118692923 GTCTGACTTTGTCCTCCCA 59 NA Rattus norvegicus 81 Apol3 ENSRNOG00000042771 ENSRNOT00000089135,ENSRNOT00000068221 3 2 2 82 7 118692520 118692861 TTGTCCAGAGATGAGGAAGC 60 118692906 118692924 AGTCTGACTTTGTCCTCCC 59 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 1 2 2 98 4 7259172 7259190 ATGACTCTGAACAGGTGGC 60 7259525 7259543 AGATGAGTCGAACCTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000086756 2 1 2 126 1 16822454 16827567 ATCTCACCATTGACAGCTG 58 16827654 16827675 GGTCGATTTCACTTAATTGGTG 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 3 6 6 80 7 132140134 132140898 TACAGAACCAGAGATGATGCA 59 132140074 132140092 CTCTGCACATTCATCTGGG 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092 1 2 6 80 7 132088067 132091529 AAGATAGGCAGCATTTCCAG 58 132088006 132088025 TGCCTTTCTCCTTGTTACAG 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092 2 2 6 80 7 132088066 132091527 GATAGGCAGCATTTCCAGG 58 132088004 132088025 TATGCCTTTCTCCTTGTTACAG 58 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 2 2 4 82 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532949 120532967 TCTCATCCCTCATGGAGCT 60 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000064858 1 1 2 80 5 62241405 62259684 GTTATTACCCTCAAGACTCTGC 59 62241346 62241364 TTCCTGAAAGGAGAAGCGA 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271 2 1 2 81 6 86739088 86739109 GTTCAACAAGACTTTCTTCTGC 59 86739148 86743355 ACACTGGATGTAGTTATCCCTG 59 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 3 1 1 61 7 5655686 5655705 GACAGATGACCAACAACTGC 60 5657551 5657572 TCAGTGAGTAGGTGAAGAAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 1 2 2 95 7 121297699 121297828 CTTACTCTCCGGAAGTCCT 58 121297622 121297640 ATGTCCGAATTTGGAGGTG 58 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 2 2 2 80 13 56929304 56929323 CAGCAAATGGAGAAAGATCG 57 56928098 56929264 CACAAGACTTAATGCAAGAAGG 58 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 1 1 1 60 9 18334647 18334665 GCAGAGTTCTGTGAAAGCC 59 18331254 18331273 AGTCTCGAAATTTGGATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000072855 3 1 3 93 10 54155878 54156664 CACAGCAATTCAGAAGCCTG 60 54156720 54156738 AGACAAGTAGCTGTGCCAG 60 NA Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 1 2 2 80 13 73441427 73441448 CAAGAAGTAAAGCAGAGTACCT 58 73437570 73441386 ACAGGTCCAGAGTTACCTC 58 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 1 2 2 80 10 87225551 87225903 GGAAACCAAAGCAAAGATTCC 58 87225491 87225509 TAGAATCTTGCTGCGTTGG 58 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907 1 1 2 103 4 148399417 148399435 TTCGATTCCGCAAGAACCT 60 148399331 148399350 TGTTTGGAACCTGTCTGGT 59 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 1 2 2 80 9 10998329 10998350 GGACAATATCCATTTGCATCCA 59 10998390 10999104 TTGATTCGTTCCTGGAACAC 59 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071 3 1 2 98 9 10997085 10997103 TCTCAGGACTCCATTCGGA 60 10997440 10997621 CTCAGGTACCGAGTTGGTC 60 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000049325 3 1 2 131 8 4441117 4441135 CGGCTCATCTTAGTCTCCA 59 4441229 4577177 TCTCCGGTACAAGTCATCTC 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000040065 2 1 2 83 11 782889 782907 TCTCCATCCTCATCCTGCT 60 764396 782846 GTAGATTAACTTCGTTGGAAGGC 60 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 3 2 3 80 17 21639928 21704866 ATAGGATTCCAGGAGTCCCT 59 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 2 2 2 80 16 54011874 54016018 CTTCTGGACCAACCTATAGAG 57 54016058 54016078 ATTCATGCCATCTCTTGTAGG 58 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071 1 1 2 99 6 986475 986493 AGAACACAAGGAGACAGCC 60 970093 986412 CGTCAAATATGTGCCTGGC 60 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 3 1 1 125 7 122160440 122160458 GAGCTGAACAAGCTTCAGG 59 122162661 122162679 AGTGGTGCTGGAGTTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 3 2 2 80 10 56664540 56664563 GTGGGAAGAAAGATGAAGTTAGTC 60 56664599 56665025 TAGCAATCTAGAGTGGTCTTCC 59 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000015632 3 1 2 92 17 9328650 9328668 TTGTTCAGGCTGACATTGC 59 9328724 9332792 GTGTGCTTCCTACTTCACC 58 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000086093 3 1 2 91 8 87211820 87211845 CAGAGTACGTTGAGAGCCA 59 87211899 87211918 ATTAACCTCACCATAGCGCT 59 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000079917 2 1 2 80 5 7703829 7703847 CGTGGAAGAGTTTCAAGCG 60 7660657 7703786 TAGAATGCCCTGAGCTTCTG 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 2 3 5 80 4 164530394 164530413 GGCATGAATGTAAACAGACC 57 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045905,ENSRNOT00000081945 1 2 5 82 2 258805539 258805558 CCAGATTCTAGCAGGTTGGA 59 258804343 258804670 TCTTCATAGCCAGGTAAGTCC 59 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 3 2 2 80 8 6905790 6906790 GGAAATTGAGGATGATGCGG 60 6906829 6906851 GTTCTTCCCTCTTCAAAGTAGGA 60 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905 2 1 2 86 8 6908638 6914945 GACAGAAATCAGCTGGCAC 59 6914993 6915013 TCTTGGAGGATTACTGAAGCT 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 2 2 2 80 7 15785799 15786680 AGAGAAATCGGAGAATTCAGGT 59 15786721 15786739 TCTGTTGGTGGGTCTTTCC 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664 1 1 2 83 7 15785462 15785480 CTCTGCTGGATTCCTACCA 59 15785523 15785762 CTGTCTTTCCTATGGAAATCAGG 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024187 2 1 7 88 19 15119271 15119479 TCCTATATGGGTATACCAGAGG 58 15119527 15119546 CCATCTCTGATCTTGATGGG 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 2 3 7 89 19 15151177 15151197 GACAACATTGACAACTTTGGG 58 15151250 15165619 AGACAACACAAGAACAGAGAC 58 NA Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 2 2 2 80 9 25428542 25430357 TCCTCAGAAGAGCCAAATCG 60 25430400 25430418 CCGCGGGTAAATTCAAACC 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000038396 2 1 4 89 4 167483797 167483816 CACTATAGAGGTCGTCCTCC 59 167483868 167483889 ATTCCTAGGTTCGAGCCTG 59 NA Rattus norvegicus 81 Rsrc2 ENSRNOG00000001238 ENSRNOT00000087905 1 1 2 80 12 38279800 38282321 AAGCAAAGAGGCAAGAAGAC 59 38282362 38282382 TGTTCTTTGTCATTGTGCTCC 60 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758 3 1 2 82 9 111608028 111608046 TGATCAAGGACAAGCAGCA 60 111608089 111618868 CTTTGTGACCTTGATCATCTCG 60 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 1 1 1 60 16 50358420 50358439 TATCGCAACAAGAAGCTCAG 58 50340701 50340719 CTGCCACAGCTAAACTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000033265 2 1 2 81 4 68818498 68819243 TTCTGCTGTACTTCCCACAG 60 68818436 68818454 TGCACATTAGTGGTTCCGT 60 NA Rattus norvegicus 81 Clcn5 ENSRNOG00000002862 ENSRNOT00000079054,ENSRNOT00000003895 3 2 2 81 X 16180433 16184451 ATCAGCACAGATCAGGGAG 59 16184496 16184514 CGAGGAAAGCAAACAGGAG 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000091264 1 1 2 80 6 26544517 26544535 GGCAAGATCCATGTTGCTG 60 26544185 26544473 ACCTGTTGTGTCTCCTGTG 60 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029 2 1 2 80 1 83051444 83051462 CATACCAGTGTGAGGTCTC 57 83051506 83059287 TTGACGGTTGATAGAGCAC 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 1 3 6 60 20 4611845 4611863 GTTCATCGCTATGAGGAGG 58 4612225 4612243 AATGAAAGCCGTAGAGGAC 57 NA DesignNoJunction Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 3 3 6 60 20 4611846 4611864 TTCATCGCTATGAGGAGGT 58 4612225 4612244 CAATGAAAGCCGTAGAGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812 2 1 3 81 19 15210724 15212172 CTGTTCTTGTGTTATCTCCTCTG 59 15212212 15212231 AGAGCAGTATTGAGGGACAC 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000084602 1 1 3 80 6 3343368 3344109 CCAGGCAATAGGATTGTATTACC 59 3340517 3340537 TCCGTTAGTAGGATGTTAGCG 60 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000066711 3 1 2 81 1 204267369 204267387 CCAAGACTTCATCCATGCC 59 204261993 204267324 GCTCTGTTGAATGCTCTCC 59 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 3 2 3 80 1 82898408 82898427 GTCCAACCTTGTTCTATGCC 59 82898068 82898366 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 3 2 3 92 7 14541375 14550369 AGATTGAATGGGACGACCTG 60 14550424 14550442 GGGAGATGACTGTGACTGG 60 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 1 2 3 91 7 14541375 14544179 AGATTGAATGGGACGACCTG 60 14544233 14544251 GGAGATGACTGTGACTGGG 60 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271 2 1 2 89 19 14533694 14533713 ATGGACATGGAAGAAGCCA 59 14551324 14551342 GTTGATATCACCTCGGCGA 60 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271 3 1 2 89 19 14533693 14533712 CATGGACATGGAAGAAGCC 59 14551323 14551341 TTGATATCACCTCGGCGAG 59 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 1 2 2 80 13 74490422 74490440 CTTCATGCTCTCATGGCTG 59 74485280 74490378 ACTTAATAACGCCCACGTC 58 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169 2 1 2 80 13 74426080 74426098 GGATGAATGCAATGCTGTG 58 74423154 74426039 TCATCAAGTTTGTAGGAACCTG 58 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382 1 1 2 136 8 76413355 76413373 TGTTCCCATGGAGTACGTC 59 76416991 76426298 GCATTGATGTCTGCTCACTC 59 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 3 2 2 85 1 65661606 65661625 GTAACAACGGCAAGAAGCTC 60 65661418 65661558 CAGAGGGTTCTCACCAGTG 60 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792 1 1 2 80 7 13019976 13019994 GAAGAGTGGGACCCTATGC 60 13020037 13021103 GTGTTTAAGCTTTGCCAGCT 60 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 1 2 3 83 1 66233735 66237018 GCTGTCCAGAGTGGATGAG 60 66233670 66233690 CATTGCTGGATTGTTCTTCCT 59 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076 2 1 2 97 8 58149239 58149257 CAGGGACTCAGAAACAAGC 59 58153896 58154016 GCTTCAGTTCTTTGTGTATGAC 58 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277 2 1 2 80 4 67362050 67365128 ATGGTCCAACAGACAGACC 59 67365172 67365190 CACAGATGCCATGTTCTGG 59 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 2 2 2 80 11 27237363 27237382 AAACAGCACTGCCAAATAGC 60 27237424 27250681 GAGCTCCTTCTTCCTTTCCT 59 NA Rattus norvegicus 81 Atp2b2 ENSRNOG00000030269 ENSRNOT00000067931 1 1 2 85 4 145707963 145715506 GGATCCAGACACAGATCCG 60 145707896 145707914 GATGGAGGTTCGAGACTCG 60 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000072897 2 1 6 86 13 84491837 84491860 TCTATTACTGTATCATCACCACCC 60 84491905 84513655 CAAACACCCACTCCAACAC 59 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000010197,ENSRNOT00000078122 3 2 2 80 7 18602064 18612050 ATTCAAAGTGGTGCTTATTGGG 60 18602005 18602024 AGGTTGAACTCGTTTCTGGT 60 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461 1 4 5 80 4 176256441 176261737 TGATATAAATAGCTTCAGGCGC 59 176256382 176256403 ATAACAAATGCAGGGAGATAGC 59 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 3 2 2 88 5 136705422 136705440 AGGTTGTCAGACACCTGAG 59 136704563 136704913 CATTTCCAGACAGTGCTGC 60 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000082564 1 2 3 80 1 135800172 135813219 TTCGTTTGTTGGGTTTCATCC 60 135800112 135800130 AGAAGGTGCTCCAGAACAG 59 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000082564 2 2 3 94 1 135818678 135818698 TTCTGTCATCATCCTCATCAG 57 135800172 135813217 GGATGAAACCCAACAAACG 58 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 3 2 2 85 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122545 5122563 GTTGCCAACTCTTCCATGG 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 3 2 2 81 3 9865831 9868323 CTCTACACCTTTGAAGGTCAG 58 9865770 9865789 CTTTGTCCTCCTCAATCACG 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 2 3 3 80 8 77272811 77276552 AGACGCAGCAAAGAATGAC 59 77272749 77272768 TCACGAAGACTTTCTCCTGG 60 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 2 2 2 80 8 40004702 40007172 GACCAGCCTTAGATACCGT 59 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 3 1 1 61 7 1737908 1737926 CTGATAGGTGGAGGAGCTG 59 1737852 1737870 CATGTCAGCTTCTCCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760 2 1 2 81 2 100246432 100249438 AATCCCAATGACAGTTCTGC 59 100246370 100246389 CACAGATGGCACATAGACAG 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000048140 3 1 2 80 10 89681940 89683340 TCTGTACAATCGTGGAGAAGG 60 89683381 89683400 TAGTTGGTCCAGCAATCCTG 60 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653 2 1 3 80 14 72333625 72335516 CCATTAAGGGCTGAAGTGGA 60 72333564 72333583 ATCTGTATCGATTCCTGCGT 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000016454 1 1 2 81 1 229075806 229078806 AGATTCAAAGTTCCCAGTCC 58 229078849 229078868 TCTGAGTGTTTGACTTGGAG 58 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 1 3 3 80 3 134293428 134293450 TATTATCTAGCCGAGATGTACGC 60 134292330 134293391 GACTCCTTTATAAAGCTCCACG 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 2 2 2 80 8 21518761 21518781 CATTCCTAGTCTGACTCCCTG 59 21517638 21518719 TGCAGTTCCAATTGCTGAG 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 3 2 3 82 20 4534058 4534076 CCGGGACAGAGACAAAGAG 60 4534121 4534227 GGAATGAGTCTGACCTACGG 60 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000058068 1 1 3 80 14 81948656 81951872 TTCTGGAATATAGACAGGGCTC 59 81951912 81951931 GATGCTTGGCTGAAAGTCTC 59 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 1 2 2 80 11 31653471 31654075 GTATAAACACCACAGTGGCA 58 31654117 31654136 TCAGAACATAGCTGTCACCT 59 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510,ENSRNOT00000064756 3 2 3 80 12 44087267 44087285 TGGAATGCAGCCATATGTC 58 44087327 44103309 ACGTTAAGAATTCCATCCTCG 58 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 2 2 2 82 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890242 10890260 GGAGCTGTAGTTCCTGTGG 60 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 1 2 2 80 7 2850699 2851368 TACAACGAGATCCTTGAGTGG 60 2851409 2851428 GTCAGGAGTGGAGATCATCC 59 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000090755 1 1 2 145 1 263917804 263917987 TACTCCAACATTTGGGCCA 59 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000006410,ENSRNOT00000079792 3 2 2 80 7 91833301 91833322 AGTTTCTTGAGAGGACTTACCT 59 91833363 91844394 TCTGTCCACGTTCTCTGTC 59 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 2 2 2 80 12 40624381 40624399 GTTTAAGCGTCTGGCTGAG 59 40624440 40625103 TTGTCACCATAGTCTGAGATCC 59 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000016740 3 1 2 89 1 244757838 244765384 ACAAGGACAGGTGTAACGT 59 244776021 244776039 AGACTTCACTGAGCTGTCG 60 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000021740 3 1 2 101 3 120696923 120696941 TGTATGGAACGAAGCTGCT 59 120697006 120723884 AATTCAGCAACTGAGCCCT 60 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 1 2 2 88 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476585 63476603 GAAGGTGATGCTAAGCAGC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502 1 3 5 103 X 159158287 159167173 AAAGACACTCAGGTCCCTC 59 159167238 159167258 CTTCTGCACATACTTCTTCCC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502 2 3 5 104 X 159158287 159167173 AAAGACACTCAGGTCCCTC 59 159167239 159167259 CCTTCTGCACATACTTCTTCC 59 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 2 2 2 87 7 59302484 59302502 ATTTACGGCAAGGTTGAGG 58 59302553 59304080 GACTTCCTCGCTTCAAGAC 58 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000082645 3 1 3 80 1 169454326 169534360 AGTACAAGGAGAAGCTGCA 59 169454264 169454285 GAAGGTCATCTTTCCAGTTCTC 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 2 3 3 80 7 61183065 61184368 TCTCCAGAGAAGAAGGCAG 58 61184409 61184430 CTTCTTTATAGGCTGGTCTGAG 58 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 3 2 2 84 2 29614433 29614454 TGATCTTGCATCCTTAATGGAC 59 29614499 29616643 AATGTTGTCCACAAACCGA 58 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 3 2 2 81 10 88160540 88160558 AAGAGCGAGATCTCTGAGC 59 88160388 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 3 2 4 104 13 91222430 91222448 CAAAGCCAACCACAGTCAC 60 91220519 91222362 GTTGCTGAACCTTGGACAG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000071516 3 1 2 80 X 159190112 159190136 GTGAGGAATCATACTTTGATGAGAG 60 159189326 159190076 CCATTTCTGGGTTCTTTGGTG 60 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 3 1 2 81 19 19784525 19784548 CCTTAATGAAGTATTCACAGGTGG 60 19783625 19784485 CCTGGGATGTAACTGGAGG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000079962 2 1 5 81 7 80750779 80777746 AAATACACTCTGATCACCACAC 59 80777788 80777806 AAGATTCTGGCTCCAGGTC 59 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000081472 1 1 2 80 2 27943424 27943451 GAAAGCTACCTTTGCCTATACTC 59 27943366 27943384 CTTTGGTGATCACACCCAG 59 NA Rattus norvegicus 81 Rn60_10_0878.7 ENSRNOG00000051123 ENSRNOT00000075981 2 1 1 83 10 87922485 87922504 TAAAGATTGCTCTTCTGGCA 57 87922251 87922440 GAACAATCGTTCCTTTCCAG 57 NA Rattus norvegicus 81 Cox6b1 ENSRNOG00000034161 ENSRNOT00000045155 1 1 1 60 2 211337345 211337363 CCAGACTAAGAACTGCTGG 58 211337387 211337405 CGTCATTGCCTTCTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0878.6 ENSRNOG00000051172 ENSRNOT00000076076 3 1 1 60 10 87936169 87936191 ACAGTCAGATCCTTAGAATCGAG 60 87936131 87936150 GACCTGTCAGCAAACTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankfy1 ENSRNOG00000016212 ENSRNOT00000021816 3 1 1 80 10 59279496 59279519 GAATAGCAGTGAGTCATTCATCAG 60 59279555 59281607 TTCAAATCACTGTACTGCTCCT 60 NA Rattus norvegicus 81 Olr4 ENSRNOG00000047512 ENSRNOT00000072272 1 1 1 83 1 70454618 70454636 AACTTGCATGACGCAACTC 60 70465281 70465299 TAGCGGTCATAAGCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 C2 ENSRNOG00000051235 ENSRNOT00000060607 1 1 1 80 20 4553499 4553517 TGTCCGTCCTGAATGAGAG 59 4552280 4553458 TTTCGTGATCTTTGTAGCAGAC 59 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 1 2 2 80 5 62164778 62165735 ATGATTACAAGGTGATGGTGTG 59 62164719 62164738 GGTGACAGTTGATTGTCCTC 59 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 3 2 2 80 13 84611466 84612833 GTCCTGTCCCTGGAATTCC 60 84611404 84611424 ATCAGATTCAGGACACTCCTC 59 NA Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 3 1 1 97 8 55623429 55623447 CATACCAGTGTTGGGACAG 58 55624462 55624480 ATGTCAAGGCAGGAAGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 1 2 2 80 3 51605329 51606644 GGTACACTCTTTGTTCAGCA 58 51605268 51605286 TCGGGAGGATTACTCAACG 59 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255 1 1 2 60 3 77153136 77153156 TGCGTTTCTCACATTACAGTG 59 77196832 77196853 GCATATACACAAATATGCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124 1 1 2 80 3 79728837 79729745 GAGGTAACGCAGATAGTTGG 58 79729788 79729806 TTTCATCCATGGATGCTCC 58 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 3 2 6 80 10 89217315 89217336 GCTAATAGCTTCACTCTGATCG 59 89217151 89217274 TCCAGTGACCTTGAGTCTC 58 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000064140 3 1 2 111 8 118323043 118323062 CATTCACCCTACTGGGAGTG 60 118323136 118323832 CTGATGTAACCACATGCCG 59 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607 1 1 2 110 8 118323043 118323062 CATTCACCCTACTGGGAGTG 60 118323135 118325375 TCTACCCTAGACATGCCGT 60 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 2 2 2 92 5 157172163 157175035 ATCTTCTGCTGGACAACCTC 60 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000079993 2 1 2 127 2 210444067 210444086 ACCTTTGTCCTTTCCATCAC 58 210441380 210443468 CTGGCAACATACTCATCCA 57 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 1 2 2 80 16 61765423 61765443 TTAGTTTGTCCTTTGGAGGAG 58 61765482 61768142 GCCAGTATTGGTTGTATATTGG 57 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064 3 1 2 116 1 101166256 101166274 TTTCTGCATCAGCTTTGGC 59 101166353 101167225 CAGTTGAACTGGGCTTTCTG 60 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 3 2 2 80 19 25247895 25247998 AGAAAGGAAGATCCTGGCC 59 25247833 25247852 TGTACTACGTCCTGGTACTG 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513,ENSRNOT00000084506 3 2 5 80 13 34502080 34515339 GATTGGATTAGATCGGTTTGGG 59 34515380 34515398 CTGGTACTCAAGACTCGCA 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 2 4 5 82 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175938 89176831 TCGAGGTTCCCTTTCTTCC 59 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 1 2 2 84 10 59900972 59900993 CCTGAGAATTGAAGATCCTGTG 59 59901038 59903779 GTTGTTGCCTCTGTATCCC 58 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000086524 1 1 5 141 8 99636752 99637846 CATGTACATGGACCACCAG 58 99637951 99637969 CTGGATAGGGACCTTGAGG 59 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000091456 3 1 2 80 20 50201334 50201352 CCCGATGAGCCTAAATGGA 59 50212816 50212836 ATCACATCCTTCCCAGATCG 59 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000082273 1 1 2 85 2 180012620 180046271 ATTACAAGGAGTGCAAGATCC 58 180046318 180046336 TATGAGGAAACTTCGGGCT 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 2 2 2 80 8 109192412 109192431 TGTATAGCGATGCCTTCCTC 60 109192474 109202625 GTCTGACTTCACCTTGCCT 60 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000087824 1 1 2 94 10 91986232 91986628 GTTGTCGGACTATGCAAGC 59 91984585 91986174 CTGGCCAGACTGGTAATCC 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 2 3 3 70 10 89286283 89286304 GGTTCAACCTCGTCTTTAAGTG 60 89288292 89288310 ATAGTCAGTGTCCAGGACC 58 NA DesignNoJunction Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 1 2 2 137 1 80606778 80609216 GATCAAGACTCGGAACTGGT 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014147,ENSRNOT00000038549 3 2 7 137 16 64036978 64048152 GCTTCTACAAAGCGGAGGA 60 64049767 64049785 GATCATGAAGCTTCTGCCG 59 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 3 2 2 160 9 44478574 44560602 TCTGAAAGGCACCAAAGAG 58 44476128 44476146 TGAAACCAGTGGCATTCTC 58 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000037559 3 1 2 84 20 53830064 53830082 AGCGGAACTGTAACCTCAC 60 53804477 53830017 CGATATGGAGAGCCCATAGG 59 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381 3 1 2 81 7 3320348 3333283 AATGAGTTCTCAGGCCCAG 59 3333327 3333346 CCAGTAGGAGAACGTAGAGC 59 NA Rattus norvegicus 81 Etv4 ENSRNOG00000020792 ENSRNOT00000028213 1 1 2 125 10 89699275 89699486 CTTCTGCAGCAAATCTCCC 59 89698962 89698981 TGACTGAGATCCTGGAAGAG 58 NA Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 1 2 2 80 5 57001657 57001675 AGAAGCTGTTGTGATTGGT 57 56999846 57001614 GCTTTCAACTGTACTTGCTG 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854 2 2 3 80 8 120436693 120436714 TACGGATTCTACAGGCATAGAC 59 120435955 120436654 AAGAGTATCATCCTGTCCCTG 59 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000083579 1 1 2 95 16 32512845 32512863 TACAGTGACAGACCACACC 59 32512920 32516233 AAGACAATCCCATTGTGAGTG 59 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179 3 1 2 106 10 90412713 90412819 TTTCGACCTCAGGGATGAG 59 90412625 90412643 CAATGACGTCATTCCAGCT 58 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 1 2 2 84 1 127715293 127721451 CGTCACATAATGAAGTTTACGG 58 127721495 127721514 TTCTGGCGAATTCTAAACCA 58 NA Rattus norvegicus 81 Galnt9 ENSRNOG00000037476 ENSRNOT00000056722 2 1 2 83 12 52142248 52142266 TACACAGTGTGGTCAACCA 59 52140764 52142201 TGAGTTCCACATTGTCGCT 60 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139 3 1 2 82 7 94491066 94500825 GGATCAACAGAAGCTGAAACC 60 94491004 94491027 CTAGGTTCAACACTTCCATTAAGG 60 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000092200 3 1 2 170 8 23146189 23146605 TTCCTCCAGCATGGATACG 59 23146037 23146055 TTAGCATTGGCCATTTCCC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000043518 3 1 4 101 8 39209356 39209375 TTCGAAATGCTGAGATTGGT 58 39207909 39209296 GGTCCTTTACCTTGTATATCCTG 58 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 3 3 3 80 9 50705166 50705186 GACTCAGCTAATGAATGGGAC 59 50705226 50706520 GCTTTCAGTCCTGAAAGTACC 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023 1 1 2 81 16 50379267 50379285 CCTTCCAGTCAGAGTCCTG 59 50373562 50374550 GTATCCCAGTGGTACCCTC 59 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000087383 2 2 4 86 14 84277970 84277988 GGAGATCCTCCAGGATGTG 59 84278038 84282991 AGGTCAAAGTTCCGAGCTC 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 2 3 8 86 20 4364126 4364247 CCAATGTCCCTAATAAGGTGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 3 2 2 80 8 56594912 56594934 GCCTGATACTATTGAAGTACAGC 59 56594974 56597147 AATTGTGCCCGTTCTAGCT 60 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924 1 1 2 149 8 56609407 56609425 GAACGAGCATGATGAGCAG 59 56609537 56610458 GAACTTAATGCCTGGAGCTG 59 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000014248 3 1 3 91 16 54184311 54184329 CAATGAAGTTCAGCACACG 58 54184384 54187892 GACACCTGTTAACCACCAG 58 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000014152 1 1 2 128 1 131454164 131454182 GAGGAACCTGAGCTACACG 60 131452451 131454072 CTCTGTACAGCTTCCCGTC 60 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000078085 2 1 2 80 16 72133047 72133068 CAGATGTTCATAGGCTACACTG 59 72133107 72133223 TTCTGATATGGATCTGTGGGT 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055 3 3 8 80 20 4388935 4389041 GGACAGTATGGAGACACGG 60 4388873 4388894 GCTATAGCAGATCCGATAGAGG 60 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595 3 1 2 80 2 49155660 49155681 CAGTTAGAAGCTGATCTGTCTG 59 49147338 49155622 ATCGATAGCTCCATATTCCCTG 59 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330 1 1 2 88 16 72065765 72065783 GAGAAAGAAGCGAAGGCAC 59 72067770 72077726 TTAGTGAAGGGTGCTTCCT 58 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326 2 1 2 65 8 93491780 93492835 TTTGTTTCTGTCCGAGGTC 58 93492864 93492882 CCTCAACTCCTTTGTTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 3 2 2 80 16 73960387 73961931 TTCTGTCTTTGAGGTTGATGG 58 73960327 73960346 TGGTCAAGAAACAACTTTGC 58 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 2 2 2 80 20 4379800 4379995 CAAAGAAAGTTTGGGAGTGTG 58 4379740 4379759 TACACTGGTTGACTGTAGGA 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279 1 1 2 87 3 176854409 176854928 TCAACTGCCAGAAGGAGAG 59 176854979 176854997 GATTCAGGTGCTCTCCAGG 60 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000064466 2 1 2 80 20 50517873 50517892 CCTGCTTAGGAAGTGAACGA 60 50487162 50517832 CGCAGTTGTAGCATCTATCTG 59 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000064466 3 1 2 80 20 50487172 50517842 AAACCAAAGGCAGATAGATGC 59 50487112 50487131 CTTTGGCTGAGGAGGTAGAC 60 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000087740 2 1 3 80 20 48504444 48519710 GCAGTTAAGGAAGATCTGGAG 58 48519747 48519770 GGTCTCATAGGTAGGATTATACTG 57 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 3 3 3 85 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155169 155187 ACAAAGACAGCCAAAGGTC 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 3 3 4 85 3 56886774 56886879 CTCAGAACACAGTCACTATTCC 59 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 1 1 1 96 16 75241244 75241262 TTTCTCCTATGCCACTCCG 59 75227546 75227566 ATTGAGACAGAACCCTTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 2 2 2 80 5 156094783 156097868 ACATCGATGTGATCATGGG 57 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 1 1 1 85 16 75465836 75465854 TCTGTCTCCTTTGAAGGCC 59 75466488 75466506 AAACTTCTGCAATGGCACC 59 NA DesignNoJunction Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 2 2 3 100 3 150863526 150864911 GGTATTTATGATAACAGATGCCCTC 60 150850109 150850129 GCTCTAGGAGAAGTTTCTGCT 60 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067538,ENSRNOT00000067435 3 2 3 81 5 100464570 100467813 TACATCCACTGAAGCCTACAC 60 100464509 100464527 GAAGGATGGGTCTCTTGGG 60 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000064316 2 1 3 100 16 74800676 74800696 CCAGTCAAAGACAACAGTGAG 59 74800879 74801375 GAAGAGCTTGTCTCTTCTGTG 59 NA Rattus norvegicus 81 Spopl ENSRNOG00000005070 ENSRNOT00000081816 3 1 2 81 3 427929 429525 ACGTTATTCTGTGAGCATCTC 58 427868 427886 GAGGTGCCAGTTCTTTAGG 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000073240 2 1 4 80 16 81666028 81666046 AAGAGGGCGATCAAATGGT 59 81666089 81676861 GAATGTCCGGTTCAAGTCTG 59 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 2 1 1 87 16 75668073 75668093 GCTTGGTCCAAAGAAACTCAG 60 75666646 75666664 ATGAAGAGCCTACAGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974 3 1 2 81 16 71158640 71158659 GTAGTAACCATTCCAAGCGG 59 71147892 71158596 AATCTTCCACCTCTGGCAC 60 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000057310 2 1 2 174 16 90341679 90341700 ACCTTCCCACTCATCTATACTG 59 90345835 90345857 CTGGTTGAAACTTGTTTGTCTC 58 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 1 2 3 93 16 75415445 75415463 CTAGATCAGGAGCAGCTGG 59 75414890 75415390 ACTTCACATCTGCATCTTGGA 60 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 1 2 2 80 16 71245757 71245775 GGAAAGTGGTCCTTGAGAC 58 71245816 71245838 GGTGTCAATCCAAAGTAAACTG 58 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283 2 1 2 80 3 176459130 176459148 CCGACTGTCTCCATCTACG 59 176455213 176459086 AACTGTGACCAGAGTGTGG 60 NA Rattus norvegicus 81 AY172581.10 ENSRNOG00000031333 ENSRNOT00000045310 2 1 1 60 MT 5230 5251 GCCTTAAGGTGATTATCATGTC 57 5191 5213 TAGTAGAGGAGATTCTCTACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051663 ENSRNOT00000077470 3 1 1 60 5 67311874 67311893 TGAAGAAGATGACCATCCAG 57 67311913 67311934 CAGCTACTCATATACCCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041777 ENSRNOT00000063530 3 1 1 60 5 99616213 99616233 GTCAAGCTAAACAGAGTCAGG 59 99616173 99616192 AAGTATTCCCAGGCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009834.1 ENSRNOG00000061630 ENSRNOT00000082148 2 1 1 60 2 114386091 114386113 GACTTGTGTCCTTATAGAAACCC 59 114386132 114386151 CCCAGTCAGTCACATAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044362.1 ENSRNOG00000058490 ENSRNOT00000091390 1 1 1 90 20 3140444 3166525 GGCAACAGCTGTGTTTCTC 60 3140372 3140390 GATTGCTGTCCTGGTTGTC 59 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000054115 ENSRNOT00000088135 1 1 1 71 2 119156572 119156590 GCAGCCACTTAAGTAACCT 58 119156625 119156643 ATCACCAAGAGTGCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000056834 ENSRNOT00000088758 1 1 1 60 11 81375672 81375693 TTACTACAATATGGCTGCTCAG 58 81375633 81375653 GAAACAATTGTTCTGAGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011117.1 ENSRNOG00000047819 ENSRNOT00000073520 3 1 1 60 2 158455570 158455591 TCCTCTTCTTCATCTTCTCCTG 59 158455531 158455549 ATCAACACTCCACCAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055419 ENSRNOT00000091343 3 1 1 60 11 75965154 75965173 CTCTCCTTAAGCTGACTGGT 59 75965195 75965214 AGTTTGGAGGTTCTAGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054323 ENSRNOT00000079868 2 1 1 60 8 120775761 120775781 GGTGTTACAGGTGTTCATCAG 59 120775802 120775821 CTCCGAGCATAGACATAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055522 ENSRNOT00000090306 2 1 1 60 8 26732751 26732771 ACATGTGGATCAGTAGGTGAC 60 26732711 26732732 GGTAAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060433 ENSRNOT00000082094 2 1 1 61 11 72398328 72398347 AACTTTCCCTTCCCTCAGAC 59 72398286 72398305 CTCAGACACTGTGTCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058634 ENSRNOT00000087436 3 1 1 60 8 61160885 61160904 AACAATTCAGTGAGAGCAGG 58 61160844 61160866 GGGATGATTTACAGATTCGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025288.1 ENSRNOG00000047260 ENSRNOT00000071611 2 1 1 63 16 31624922 31624942 GACTGTAGAGATAGCTCAGTG 57 31624879 31624897 GGATCGAACTCACATCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051587 ENSRNOT00000080212 2 1 1 66 16 10439144 10439162 CACATCTGCGTCAGTAGGT 60 10439192 10439210 TCACAGGTTAGAACACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058814 ENSRNOT00000087256 1 1 1 60 2 109632954 109632974 GATCGCTTGACAAGTTATGTG 58 109632996 109633014 GAAAGTTTCACAGGGAGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056304 ENSRNOT00000079441 2 1 1 60 16 47057393 47057411 TCACGTGTACATCAGGAGG 59 47057434 47057453 CTGGAATACTGAGCTCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044386 ENSRNOT00000069653 2 1 1 60 16 50847077 50847096 TGAATGAACCAGATCTGGTC 57 50847036 50847054 CCTCTAAGCACTCACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053793 ENSRNOT00000088146 1 1 1 60 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874230 TTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054958 ENSRNOT00000084098 2 1 1 60 8 126883587 126883605 CGATGAAGAATGCAGCCAG 59 126883628 126883647 TCCATGATCAATGTGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055457 ENSRNOT00000086619 1 1 1 64 8 20768871 20768889 ATGCTCACTTTGGAAGCAC 59 20768825 20768848 CAGAGGCAATTCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061167 ENSRNOT00000080208 2 1 1 61 8 23032893 23032914 AATGAGGTTTATCTAAAGCGCG 60 23032936 23032954 CTGGGCTACATGGTGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033910.1 ENSRNOG00000052102 ENSRNOT00000080403 2 1 1 82 11 43932701 43932725 TCTGTTTCACTATTCGGATCTC 58 43932766 43932786 GCAGCCGGTATATCTTTATCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045798 ENSRNOT00000073711 1 1 1 60 16 5069317 5069338 CCACATTACCCTGAACATATCC 59 5069278 5069296 AGGCCTAACCAAGCTTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055427 ENSRNOT00000083041 1 1 1 60 16 70579540 70579561 TGCATCCTTTCCAAATCTTCAC 60 70579581 70579600 CCCTCTTCTATGAGGGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786,ENSRNOT00000082634 1 2 2 88 X 22399684 22399828 CTACGGAGACTAGAGGTCC 58 22399614 22399632 TATCGTCTGGAGAGGATGC 58 Novel Rattus norvegicus 81 AABR07042012.1 ENSRNOG00000048494 ENSRNOT00000073030 3 1 1 60 X 145822409 145822427 CTGTGGCGTACATGAAACC 59 145822450 145822469 TTTGAGGATGTCCACATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051749 ENSRNOT00000081923 1 1 1 60 4 6880678 6880699 GGAATGATAGAGATCAGCATGG 59 6880639 6880658 GGAAGCTTCATGAATTTGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051749 ENSRNOT00000081923 3 1 1 61 4 6880678 6880699 GGAATGATAGAGATCAGCATGG 59 6880638 6880657 TGGAAGCTTCATGAATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036509.1 ENSRNOG00000051479 ENSRNOT00000090580 2 1 1 68 12 45511330 45511349 TGTGGGACATTTCAAAGACC 58 45511279 45511299 CATTCCAGCCATCTTGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 Rn60_1_2465.1 ENSRNOG00000051330 ENSRNOT00000076845 3 1 1 60 1 239155789 239155808 ATCGGAGTGCTTTAAGAGGA 59 239155831 239155849 GTGGCAGCAATGAGAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059253 ENSRNOT00000091852 2 1 1 84 X 135651495 135651515 GGCTCTTTAAGAGGCTAACAC 59 135651561 135651579 CAGGAACCAAAGAGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035368.1 ENSRNOG00000054882 ENSRNOT00000091384 1 1 1 60 12 11364213 11364233 GAAAGGAGAAGGAGAGGAGTG 60 11364173 11364192 TCCTCCTTTCCTTCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053335 ENSRNOT00000091974 3 1 1 60 4 46079818 46079836 TGATTTGGCTACCTTTGCT 57 46079776 46079794 CAGAGCTGTGAATGTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052829 ENSRNOT00000083092 1 1 1 65 6 11304918 11304937 TGGTTCCTCTTCAGTTTGTG 58 11304965 11304983 AGTGGATGCTTTCCATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060809 ENSRNOT00000077795 1 1 1 60 9 23658600 23658622 AGTCAAGGGTATATGAGTAGCTG 59 23658562 23658581 ACCTTGAGAGCTTGTTTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054554 ENSRNOT00000077271 1 1 1 60 9 40543276 40543294 TTTCAGCACAGATGCTGGA 60 40543318 40543336 ATCCTTGACCAGGAACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073039.1 ENSRNOG00000028747 ENSRNOT00000034810 3 1 1 140 4 118705428 118705446 ATCACTGTCACTTCCGAGG 59 118705304 118705325 GATCTGGAAGTACAGCTCGT 59 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000055346 ENSRNOT00000082924 3 1 1 60 1 152004305 152004324 CTGTGTTGCATATGCATCAG 58 152004345 152004365 ACACTGAGTGTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056481 ENSRNOT00000082581 1 1 1 61 X 59952368 59952386 GTGATCATTTCTGCAGCAC 57 59952411 59952429 GGGCCATGCAAATCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072061.1 ENSRNOG00000050797 ENSRNOT00000075044 1 1 1 67 1 263589023 263589041 GAGATCCAGCTGTAAGGCA 59 263588974 263588992 TGGTACCACCCACAATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067441.2 ENSRNOG00000049160 ENSRNOT00000070128 1 1 1 60 9 45847499 45847522 CTTGAGTAAGAACAACTTACCAGG 60 45847541 45847559 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061021 ENSRNOT00000081505 2 1 1 61 2 139539918 139539936 AATGAGGTTTATCCGAGGC 57 139539875 139539893 AAGAGACATGAGGCTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053837 ENSRNOT00000083607 3 1 1 60 4 128865873 128865894 ATGATACAGAGATTAGCATGGC 58 128865834 128865854 GAAACACTTCACAGATTTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056549 ENSRNOT00000078677 1 1 1 60 2 100079487 100079505 CTGTGTACCAGCCAGTAGG 60 100079445 100079463 TCACAACACAGAGCAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053743 ENSRNOT00000081618 2 1 1 60 2 126550907 126550926 GGCCTATCCACTGAATTACG 58 126550947 126550967 TTGCATTTCCAGAGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053743 ENSRNOT00000081618 3 1 1 60 2 126550906 126550926 AGGCCTATCCACTGAATTACG 60 126550947 126550966 TGCATTTCCAGAGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057405 ENSRNOT00000077326 1 1 1 60 9 40909100 40909119 TGTATGTCAGTTGTCAGCAG 58 40909142 40909160 GATGTTGACATGTCGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057151 ENSRNOT00000081867 3 1 1 70 2 207172369 207172389 TCTCTAGCACCACATAAACTG 58 207172421 207172439 TTTCGTGTCTTCCTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027157.1 ENSRNOG00000045923 ENSRNOT00000072610 2 1 1 61 17 17137024 17137042 TAGCTTTGTAGACCAGGCT 58 17136981 17136999 ACTTAGGAGGCAGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056696 ENSRNOT00000086666 1 1 1 60 6 133822237 133822256 CCAATGATGAGATCTGGTGG 58 133822276 133822297 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054225 ENSRNOT00000082655 2 1 1 60 3 123643751 123643773 GGAACGATACAGAGAAGATTAGC 59 123643793 123643811 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000248.1 ENSRNOG00000051844 ENSRNOT00000091348 1 1 1 80 1 6279239 6279259 AGAATTGACAAATGGGACCTC 58 6279171 6279193 ATCTGTTCGTTGTCGTGTC 58 Novel Rattus norvegicus 81 AABR07024593.2 ENSRNOG00000048176 ENSRNOT00000075565 1 1 1 60 16 7817655 7817673 GTGTCTCTGTGTAGCCCTG 60 7817613 7817631 GATCAAGGGTAGCCTGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058181 ENSRNOT00000088150 3 1 1 60 15 84876529 84876548 GTCACATGTGCATCAGTAGG 59 84876568 84876589 GGTCAGAACACTGAGTATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056682 ENSRNOT00000080329 1 1 1 60 16 41951320 41951341 AGAATACAGAGATTAGCACAGC 58 41951281 41951300 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055960 ENSRNOT00000091895 2 1 1 60 X 77683562 77683582 GGGCTAAACTCACTCATTTCC 59 77683522 77683541 TTCCCACATGGAGAAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057211 ENSRNOT00000088051 2 1 1 60 3 114432242 114432261 AGCCAATGAGGTTTATCCGA 59 114432201 114432220 GAACACCAATGGCTTATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061087 ENSRNOT00000084635 1 1 1 60 6 80224782 80224801 AAGAGGCTAACACAGAAGGG 60 80224824 80224842 GAGTGGAGCCTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD43 ENSRNOG00000052611 ENSRNOT00000077507 1 1 1 60 7 121302276 121302297 CAAATGATGAATCCTTTGACGG 58 121302237 121302258 AGATCAGAACATGACAATCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000051716 ENSRNOT00000089356 2 1 1 60 16 14132962 14132982 GTAGTTTACACAGCCAGACAC 59 14133002 14133022 GCATATCGGCCATCTTAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000042015 ENSRNOT00000063768 2 1 1 60 16 50956722 50956740 ACCAGTCTTCACTGATCCT 58 50956762 50956782 TCCCATCCAAGTAATAGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000087649 2 1 2 60 5 47847427 47847450 CATATTCTTGAGTCGTCTTGAGAG 59 47848501 47848521 ATTCACCAGGTACACTTTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA30 ENSRNOG00000053245 ENSRNOT00000090351 3 1 1 60 1 194727846 194727865 TTGATTACATCCTTGCCCTG 58 194727887 194727906 CTGTTCCCTTGAGTAACAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055884 ENSRNOT00000088014 3 1 1 60 7 119070258 119070279 GAAACGATACAGATTAGCTTGG 57 119070219 119070238 TGGAACTCAATGCATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057559 ENSRNOT00000081018 2 1 1 60 16 56236983 56237003 GTGCATCATTAAGTGGCAGAG 60 56236943 56236961 GAATCCAAGCAGGTAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004993.1 ENSRNOG00000042292 ENSRNOT00000064130 3 1 1 106 1 173347207 173347226 TTGAAGAGCTCCTGGAACAG 60 173347294 173347315 AGTGGACCTGTTAGCATGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053293 ENSRNOT00000078095 3 1 1 63 1 239939936 239939954 ATGTTTGTCAGTTGGCAGC 59 239939891 239939910 TCATGGGTCAGAATGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041374.1 ENSRNOG00000049682 ENSRNOT00000071553 2 1 1 71 X 127804080 127804098 TCAGCATTAAGGTGGGTGG 60 127804133 127804151 AATGCATCAGGGTAGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052857 ENSRNOT00000085672 1 1 1 97 16 11921143 11921161 TAGAGCAGGTACAGCATGG 59 11921222 11921240 TTACCCTACAGGTGGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026984.2 ENSRNOG00000055099 ENSRNOT00000085437 3 1 1 82 17 8435406 8435427 TTGATCAGTTGGAGCAAAGC 59 8435343 8435362 AATAAGAAGTGACGTGTGGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052316 ENSRNOT00000081003 2 1 1 60 17 10713444 10713462 ATTCGGTTGATATGGCTGG 58 10713486 10713504 TGGGAGGAACAAACATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039377.1 ENSRNOG00000054546 ENSRNOT00000091088 1 1 1 60 X 74871152 74871172 AGACATGTACAAGGGATACTG 57 74871193 74871212 ACTCATCAATCACAAGGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056780 ENSRNOT00000087395 3 1 1 60 2 115807820 115807838 ATTGCACTCCGGATATGCT 59 115807862 115807880 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.4 ENSRNOG00000057799 ENSRNOT00000077370 3 1 1 73 17 43777485 43777503 CTTGTTGAGCTCCTCATCG 58 43777540 43777558 GAGACAACAAGAAGACGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057611 ENSRNOT00000081795 2 1 1 60 X 38392669 38392688 GGAGATGACAAGGACAAGTC 58 38392708 38392729 AGAACTTATTTGGAGACTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041847 ENSRNOT00000063600 2 1 1 60 16 39597947 39597965 AAGTTAGGCAGGGTTGGTC 60 39597905 39597924 CTCCCACTCCACAAATAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043564.1 ENSRNOG00000059734 ENSRNOT00000078023 1 1 1 80 19 29243215 29243236 AACTTAGAGATGGAGAACACTG 58 29241312 29243176 GTGGTGATTTCTAGAGAAGGT 57 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000051707 ENSRNOT00000082211 1 1 1 60 8 13867333 13867351 GACAAAGGCAGGTTGACAG 59 13867375 13867393 ACAATGAGTTCTGGGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060018 ENSRNOT00000054649 2 1 1 60 9 100762549 100762569 GCCCTATCTCATCTGATCTCG 60 100762588 100762609 CCCATCCAAATACTAACCAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052280 ENSRNOT00000090563 1 1 1 62 9 28372405 28372428 CCTGATTTGGCATGAGATATACTC 59 28372366 28372385 TGGATGGACTCTACCATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096051.1 ENSRNOG00000049764 ENSRNOT00000071702 2 1 1 60 10 15615954 15615974 TAGAGCCCATAGTTTCAAGAG 57 15615914 15615934 GAATAGCCAATAAACTGCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057627 ENSRNOT00000084922 3 1 1 60 8 49163048 49163066 AGTTGGAATAGGAGCTTGC 58 49163089 49163108 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067197.1 ENSRNOG00000056666 ENSRNOT00000086407 1 1 1 75 9 34381140 34381158 AAATGTGATCGCTTCTCGG 58 34381083 34381107 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000054069 ENSRNOT00000079601 2 1 1 60 10 57319447 57319468 TAGAGAAGTTGCTCTGACTGTG 60 57319408 57319428 GGGACACTATGTCTCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043395.1 ENSRNOG00000055892 ENSRNOT00000086160 2 1 1 74 19 28041833 28044370 AAATAGGCCACACTTCAGG 57 28041777 28041796 AGAATTGACATGACCTCCTC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA7 ENSRNOG00000053438 ENSRNOT00000090620 2 1 1 60 4 147718319 147718337 AGGTACCCATTCCATTCCC 59 147718277 147718295 ATGTTGCAGAGTGTCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000053438 ENSRNOT00000090620 3 1 1 60 4 147718319 147718337 AGGTACCCATTCCATTCCC 59 147718277 147718296 ATGTTGCAGAGTGTCTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056402 ENSRNOT00000082721 2 1 1 103 4 20016433 20016453 CACCTGAAGCAGTTAACTCTC 59 20016518 20016536 CAATCTTGACTGCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048308.2 ENSRNOG00000052929 ENSRNOT00000080570 3 1 1 80 5 71786650 71786674 TTCCCACAGCTGTTACTCTG 60 71786589 71786607 CATCTGGATTTGAGGCAGC 59 Novel Rattus norvegicus 81 AABR07016418.1 ENSRNOG00000051014 ENSRNOT00000071355 2 1 1 108 14 99787851 99787869 TGGTGTGAGGTGGAATCTC 59 99787759 99787779 ATTCTCAGCTGAGGGATCG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051871 ENSRNOT00000088373 2 1 1 60 2 112788087 112788108 ATGTAACATGTGCATCAGTAGG 59 112788128 112788147 TCAGAACACTGAGTGAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012274.1 ENSRNOG00000059604 ENSRNOT00000090155 1 1 1 60 2 191986140 191986158 GGTTGTGGAAAGACCTCTG 58 191986098 191986116 CACCACCGCTATAGTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053338 ENSRNOT00000086089 3 1 1 61 10 39414032 39414053 CAACCCATATGCTAAGATTGGA 58 39414074 39414093 GGTATTCATCCTTGCTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054705 ENSRNOT00000080634 3 1 1 63 6 11086916 11086934 GTATGCGTCAGTAGATGGC 58 11086871 11086889 TCACAGGTCAGAACACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061400 ENSRNOT00000082361 2 1 1 61 10 56507209 56507228 TTGGCTAAGATCAAGTGCAG 58 56507167 56507185 GACAACCAGAGTTTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103090.1 ENSRNOG00000053437 ENSRNOT00000084200 3 1 1 60 10 13780215 13780235 CCCTTCATGGAGTTATTTGCA 59 13780175 13780193 CAACAAGGACTTTGAGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038795.1 ENSRNOG00000055102 ENSRNOT00000088653 2 1 1 80 X 60864191 60864278 CTCTCCTGAGTTAGGTGCT 58 60864129 60864147 AAATGTGCACTTCTGTCCT 57 Novel Rattus norvegicus 81 AABR07051665.1 ENSRNOG00000053446 ENSRNOT00000088394 1 1 1 60 3 18970578 18970596 TTGTGCTCACTCAGTCTCC 59 18970620 18970638 GTGATGGTCACCTTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_0730.2 ENSRNOG00000060951 ENSRNOT00000086267 1 1 1 80 3 66404639 66436585 GCTTTCTAAAGGTGGTCCTG 59 66403370 66403388 TGCTGCCTACAAGGTAGAG 59 Novel Rattus norvegicus 81 AABR07014177.1 ENSRNOG00000039989 ENSRNOT00000047322 1 1 1 60 14 4539193 4539212 CAGTCCCACAAATGGTACAG 59 4539230 4539253 GAGATTCATATCTTTGTGACTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014177.1 ENSRNOG00000039989 ENSRNOT00000047322 2 1 1 60 14 4539474 4539496 GAAGAGGATTCAAAGCTACATGG 60 4539516 4539534 AACTTTGGGCTTTGGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit3 ENSRNOG00000022839 ENSRNOT00000031025 2 1 1 80 1 252906326 252906344 TTCTGAACTGTTCAGCCCA 59 252906387 252909510 ACTCCTTGTTGACCTCACTC 59 Novel InUTR Rattus norvegicus 81 AABR07067506.1 ENSRNOG00000016444 ENSRNOT00000021996 2 1 1 60 9 49795661 49795680 CAAACTTCAAGAGCAGCGAG 60 49795620 49795638 TCAATGCCATTCCTGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064634.1 ENSRNOG00000038771 ENSRNOT00000040085 1 1 1 60 6 88014047 88014066 GCAATTCTGGAGTACCTCAC 58 88014085 88014107 GATCTTTAGAAGCATTACCTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055945 ENSRNOT00000089465 3 1 1 62 4 182604665 182604686 CCAAACGTAGTAAACTCAACTG 58 182604624 182604642 AGAGAATGGGAATGCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141967.1 ENSRNOG00000057189 ENSRNOT00000088433 3 1 1 84 7 78733993 78734012 TTTCCTCCGTGAACAAACAG 59 78734058 78738561 CCGTGAGTTCCTTGTTTCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000051761 ENSRNOT00000089503 3 1 1 60 9 77004734 77004755 CCCTGAAATTCAGTCAGTTGAG 59 77004695 77004713 CACTCACATACCTCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057331 ENSRNOT00000079228 2 1 1 60 9 9954468 9954489 GATACCATGATCATGAAGGTGG 59 9954429 9954447 ACATCCAGAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053799 ENSRNOT00000083306 1 1 1 60 6 59461293 59461312 GTTCTATCTGATGCCTCCTC 57 59461252 59461270 AGCTCCTATTCCAAGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030183.1 ENSRNOG00000050745 ENSRNOT00000073297 3 1 1 60 10 74402111 74402129 ATTGCTATGTAGTCCTGCC 57 74402152 74402171 GAGTTAGAGGCCAGTTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 3 1 1 76 15 44329525 44329560 GAAACAAGCCGAGACACAG 59 44329600 44329618 CTCTTGGATCATGTCCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056361 ENSRNOT00000077488 1 1 1 60 12 26889720 26889738 GACCAGCAGATGATCTTCC 58 26889678 26889697 CTCTGCTTTACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005618.1 ENSRNOG00000061844 ENSRNOT00000084389 2 1 1 80 1 190369045 190369063 AGAGGCTGAGAAGATTCCA 58 190368904 190369003 AACCATTGTCTATCCCAAGTG 58 Novel Rattus norvegicus 81 LOC103694487 ENSRNOG00000057166 ENSRNOT00000089271 2 1 1 107 X 63897892 63898088 CCAATGTAGTGGAAAGGTGC 59 63898155 63898176 CTCTTCTTTGTAGGTGGTACAG 58 Novel Rattus norvegicus 81 SNORA3 ENSRNOG00000059726 ENSRNOT00000087701 3 1 1 60 8 62293283 62293302 ATCTGCTGGTCTTCATTCAC 58 62293242 62293262 TCTAATCTGGGCACTAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130391.6 ENSRNOG00000056989 ENSRNOT00000089167 3 1 1 92 17 43689912 43689930 CAGTCTTCTTAGGCAGCAG 58 43689838 43689856 ATGAGGAGCTCAACAAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD61 ENSRNOG00000054559 ENSRNOT00000078086 1 1 1 60 X 159889882 159889903 TTGAATCCACTGATCATCTGAC 58 159889843 159889863 AAGCTCAGAACTTCTTAGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057581 ENSRNOT00000088692 2 1 1 60 17 27281031 27281051 TCACTTTAGCAGCACATACAC 59 27281070 27281091 AAAGAGCCATGCTAATCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059236 ENSRNOT00000085489 2 1 1 60 X 73798423 73798444 GAACAATGCAGAGAAGATTACC 58 73798384 73798403 GCTTTGAGAATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056058 ENSRNOT00000086180 1 1 1 69 17 15377056 15377074 GACCTGTCTTCCCTTCCTG 59 15377005 15377024 CCAAACAGTGAGGCTTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053933 ENSRNOT00000078389 3 1 1 60 17 46177017 46177037 TATGATGCTGTGCTACAAGTG 59 46176977 46176999 AGGTAGACATAGCATCTTTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053739 ENSRNOT00000089489 3 1 1 67 3 7399569 7399587 TTATCCATTGCACTCCGGA 59 7399520 7399538 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053757 ENSRNOT00000082756 3 1 1 60 3 122805523 122805544 ATAAACTACCCTGTGTACACCT 59 122805564 122805583 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036567.1 ENSRNOG00000020112 ENSRNOT00000027236 1 1 1 60 12 48560749 48560771 CTGTTTGGTAGCTTGACTATTGG 60 48560789 48560809 AGAAGAGTTGCTGCTTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051386 ENSRNOT00000089526 1 1 1 60 X 104127656 104127675 TGTTCTTGGCTGATCTAGGT 59 104127615 104127635 CACATGAAGTGATGAACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060220 ENSRNOT00000082761 2 1 1 60 10 40173228 40173246 GTTCTTCATGTATGCCCGT 58 40173270 40173288 ATCAGTGCAGCTGAAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1408.2 ENSRNOG00000054935 ENSRNOT00000086833 1 1 1 60 7 142943789 142943807 GACTGGTGACTCCTCATCC 59 142943831 142943849 AGCATTGAGAGCCTCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004025.1 ENSRNOG00000048533 ENSRNOT00000074828 2 1 1 60 1 122701289 122701307 CAGCTCTAAGCTGGATCCA 59 122701247 122701266 CTTCTCTATTGGGCAGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055165 ENSRNOT00000091591 1 1 1 60 4 22005648 22005666 ACATGTGGGTCAGTAGGTG 59 22005690 22005708 AGATGTTGGCAGGTCAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044820 ENSRNOT00000070087 1 1 1 60 2 113091314 113091335 CATGTCATCTGATCTCAGAAGC 59 113091275 113091296 TTCCTCCTTTCAAGTACTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044820 ENSRNOT00000070087 2 1 1 60 2 113091318 113091337 CCCATGTCATCTGATCTCAG 58 113091277 113091297 CCTCCTTTCAAGTACTAACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000051369 ENSRNOT00000077431 3 1 1 60 3 4915933 4915953 AGAAGGGTAAAGGAAGTCTCC 59 4915975 4915993 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887,ENSRNOT00000076831 1 2 5 80 6 114770907 114780360 CCTTTAGGAACTCAATGTGTCC 59 114770848 114770866 AGTGATCTAGGCCATGAGC 59 Novel Rattus norvegicus 81 ENSRNOG00000050152 ENSRNOT00000075483 2 1 1 81 18 54247823 54495023 CTGGTCTTATGAGATGCAGC 59 54495067 54495085 GCTGTTGTGAAGGTCTTGG 59 Novel Rattus norvegicus 81 AABR07029938.2 ENSRNOG00000057597 ENSRNOT00000081750 2 1 1 80 10 60626302 60626321 ATTCACCTCAGTTCCTTCTC 57 60626237 60626257 TGAAGTACTGCAGAAACGG 58 Novel Rattus norvegicus 81 AABR07003935.13 ENSRNOG00000050415 ENSRNOT00000072072 3 1 1 60 1 121181127 121181149 GTTATATTCCAGGGCTTATCCAG 59 121181089 121181108 TTTAACACCATTCAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015556.1 ENSRNOG00000047460 ENSRNOT00000075037 3 1 1 108 14 63307932 63307950 GACAGAGAAGGAGGGAAGG 59 63307842 63307861 GTAATTCACATGCACATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320,ENSRNOT00000073954,ENSRNOT00000074349 1 4 4 86 5 77902648 77902974 ATGTGGACAAGCTCAATGG 58 77902580 77902598 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320,ENSRNOT00000073954,ENSRNOT00000074349 2 4 4 87 5 77902648 77902975 GATGTGGACAAGCTCAATGG 59 77902580 77902598 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058433 ENSRNOT00000085169 1 1 1 60 14 105497906 105497924 AGTAGGTGGCCAAGATGAG 59 105497864 105497885 AGATGTTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076888 1 1 2 82 13 77800242 77818851 ACATCCTTAGTGCTCCCAG 59 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel Rattus norvegicus 81 Dlx6 ENSRNOG00000010822 ENSRNOT00000076086 3 1 1 81 4 32375113 32377013 ACAAACACAGGTGAAGATATGG 59 32377054 32377073 CTCATGTGGGTTACTACCCT 59 Novel Rattus norvegicus 81 AABR07040782.1 ENSRNOG00000011067 ENSRNOT00000014702 3 1 1 103 X 110178223 110178246 GGAATTACCTTCAGAATTACAGGG 59 110178142 110178161 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029863.4 ENSRNOG00000061193 ENSRNOT00000084581 1 1 1 60 10 56561420 56561440 GTCATCAAGGTGTTCAATGAC 58 56561462 56561480 TCTTCACTTCTTCTGGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029863.4 ENSRNOG00000061193 ENSRNOT00000084581 2 1 1 60 10 56561751 56561772 CCATCAAGAAGAATCTGACAGG 59 56561792 56561811 TCCTCCTCGAAACAATTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000051870 ENSRNOT00000082770 3 1 1 60 12 30194169 30194190 AGAGTAATTAACTGCTCTGGGT 59 30194209 30194229 ACACTGGACCTTAGGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000059451 ENSRNOT00000087326 2 1 1 71 1 194988865 194988884 CCCAGTCAAACATTCCTTGG 59 194988813 194988831 ATTTCCGATGACAGTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053299 ENSRNOT00000078406 1 1 1 60 14 65733093 65733112 TTCACAGCTGACTGCTATCC 60 65733134 65733153 CATCCACCACTCATCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056952 ENSRNOT00000091329 1 1 1 60 3 148628947 148628969 CAATACAGAGATTAGAATGGCCC 59 148628988 148629007 TGGAATGCTTCACCAATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052329 ENSRNOT00000087438 3 1 1 60 3 159167264 159167284 ACTGTGATATCTCTGAGTGTG 57 159167224 159167244 GAGGTCAAGTTTCCAAATCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057608 ENSRNOT00000079396 2 1 1 60 17 90659468 90659488 GATGACCTTCACATTGGAGGA 60 90659428 90659450 GAGCACAGCTATTCATATACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000057377 ENSRNOT00000084436 3 1 1 61 12 7032844 7032862 GGTTTGGAAAGGACTGGGA 60 7032801 7032819 CTCTGTGGAATGGTTGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027267.1 ENSRNOG00000060618 ENSRNOT00000088725 3 1 1 80 17 22023898 22026550 TCTTGTGTCCAGCAGACTC 59 22026593 22026612 AGGTCTAGACTGAAGGAAGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061002 ENSRNOT00000082742 2 1 1 60 12 15115795 15115813 CATGTGCTGATACAGGACG 58 15115836 15115855 TATCTCATCCTTGCGAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059879.1 ENSRNOG00000031045 ENSRNOT00000046350 2 1 1 60 4 40004669 40004687 GTGTTCTTCGACATCACGG 59 40004711 40004729 CAAACAGCTCGAAGCAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sap25 ENSRNOG00000051023 ENSRNOT00000084480 2 1 1 80 12 22126725 22126743 AGACAGAAAGAAAGCAGCT 57 22126581 22126681 AGGGAGAAAGAGGTACTGG 58 Novel Rattus norvegicus 81 AABR07047262.2 ENSRNOG00000060913 ENSRNOT00000082001 1 1 1 60 5 25773846 25773870 TACAACAGATAGAGGCCTTATATCC 60 25773889 25773911 GTGGTCTAACTTCTTCAGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA2 ENSRNOG00000059636 ENSRNOT00000086552 1 1 1 60 2 97100103 97100123 TCTTCCTGTGGTTTATTGGCT 60 97100063 97100086 CTTCCAAATGGAATAGTCACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061204 ENSRNOT00000079400 3 1 1 93 14 21558061 21558080 CCAATGAGGTTTATCCGAGG 58 21557987 21558005 GCTGTGTAAGGTAGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060757 ENSRNOT00000080209 3 1 1 62 14 84034274 84034292 GAGAGGCTATGTCTACGCC 60 84034318 84034336 CGCTAGGCCACTTAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099360.1 ENSRNOG00000025214 ENSRNOT00000032728 2 1 1 60 4 7052742 7052760 TGATGAACTCGCTGAAGTG 58 7052700 7052718 TATGCCTTTGATGAGGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043453.1 ENSRNOG00000053751 ENSRNOT00000083821 2 1 1 81 19 28665647 28666844 CATGAAGAACAGGCCACAC 59 28665584 28665602 CAGAATTGACATGACCGCC 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 3 2 3 80 13 75164267 75164286 ATCTCTGACCCTTTCTGGTC 59 75164325 75167549 ATAAGAGCCTTCATCCTCTAGTG 59 Novel Rattus norvegicus 81 Rn60_X_0674.4 ENSRNOG00000051119 ENSRNOT00000076605 1 1 1 80 X 66528966 66534938 GTGAGCTAATTCAGTGCTTCC 59 66534978 66534998 TCCAGCTTTCATCAAGTTGAC 59 Novel Rattus norvegicus 81 SNORA26 ENSRNOG00000056287 ENSRNOT00000080374 2 1 1 60 14 36664777 36664795 AGGGTAAAGGAAGTCTCCA 57 36664735 36664753 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115159.1 ENSRNOG00000040383 ENSRNOT00000062136 3 1 1 60 10 35858123 35858142 TCTTTGAGGTCACAACTCCC 60 35858082 35858101 TGAGGAACAACTTGCAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD52 ENSRNOG00000057819 ENSRNOT00000081740 2 1 1 60 2 120783164 120783185 ATGAGTTCTTTGCAGACTAGAG 58 120783205 120783224 GATACCTTGCATTCTCGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063516.1 ENSRNOG00000060052 ENSRNOT00000083144 1 1 1 93 6 33080627 33088533 GTACAGCAGTTGTTGTAAATGG 58 33080555 33080577 CCTTAGGAAGACACTCAATATGC 59 Novel InUTR Rattus norvegicus 81 5S_rRNA ENSRNOG00000048135 ENSRNOT00000053353 2 1 1 60 1 264649143 264649162 CGATCTCGTCTGATCTTGGA 59 264649183 264649203 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066142.1 ENSRNOG00000057009 ENSRNOT00000079166 3 1 1 82 9 3897599 3897879 CATTCATGTTCTTGACTGGC 58 3897921 3897942 TCTTCACAAGACTTAACCAGTC 58 Novel Rattus norvegicus 81 AABR07063829.1 ENSRNOG00000043366 ENSRNOT00000065561 2 1 1 89 6 51663233 51663252 CGTGCTTGTGTAATAAAGCC 58 51663305 51663323 CTTCTGTCCAGAAAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063829.1 ENSRNOG00000043366 ENSRNOT00000065561 3 1 1 89 6 51663233 51663253 CGTGCTTGTGTAATAAAGCCA 60 51663305 51663323 CTTCTGTCCAGAAAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC123185.1 ENSRNOG00000052414 ENSRNOT00000077638 1 1 1 76 15 108924514 108924532 TTTGCTTTCTACAGTCGCC 59 108924574 108924592 GAAGTGAGTCCGACCATCC 60 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000059438 ENSRNOT00000087823 1 1 1 60 1 84992329 84992349 TAAAGGGTTCAACCTCTCCTC 59 84992289 84992308 TAACTTTCCTCTTCCACGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0829.4 ENSRNOG00000051100 ENSRNOT00000076902 2 1 1 87 13 77983547 77987970 CAGTAAAGGGTAAGATGATGGC 59 77983481 77983499 TCTCTACTTATGGCCACGG 59 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000076715,ENSRNOT00000089351 2 2 2 60 13 78997549 78997568 TTCTTCCTCATCCCATGACC 59 78997588 78997609 ACAGAATGAGGCTTTGTTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022057.1 ENSRNOG00000060929 ENSRNOT00000086497 3 1 1 60 13 104816509 104816529 CTGTCAGTTCTCTTCTTCCTC 58 104816551 104816569 CCATCAGGAAGTAGGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106947.2 ENSRNOG00000060070 ENSRNOT00000079475 1 1 1 80 1 168097986 168098008 ATCCTTATTGCTGACTTCTTGC 59 168097927 168097945 TTCACGAATTTGCCGTGTC 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000055074 ENSRNOT00000082472 2 1 1 60 6 80132278 80132297 GAGTTGGAATAGGAGCTTGC 59 80132317 80132338 GGAAATACTGCAATACCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060908 ENSRNOT00000084992 2 1 1 65 2 243616761 243616780 TGCTGACCCTTATGATTGTC 58 243616808 243616826 AACACAGCCTTCCACTACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054623 ENSRNOT00000085559 3 1 1 60 1 72342484 72342506 GATACAGAGAAGATTAGCATGGC 59 72342526 72342544 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058905 ENSRNOT00000082661 2 1 1 60 4 177714456 177714477 GAGGCTATGTCTACATTCAGTG 59 177714417 177714437 ATGTCGGGCTATTAACATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051717 ENSRNOT00000089301 2 1 1 60 4 101873499 101873519 CCTCCAGGATGTATACTAGGT 58 101873459 101873478 TCTATGGCACCTATTGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051717 ENSRNOT00000089301 3 1 1 60 4 101873464 101873482 ACATGTGTCAATAGGTGCC 58 101873422 101873443 TTGGTCAGAATACTGATCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059948 ENSRNOT00000082973 1 1 1 60 1 56860112 56860133 GACAACAGAAAGTCAAGAACAG 58 56860073 56860092 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049768.1 ENSRNOG00000057488 ENSRNOT00000088532 2 1 1 60 5 137125539 137125557 CACACTCATCTGCATTCCC 59 137125497 137125516 TCTGTGTCTGTGTCTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008681.1 ENSRNOG00000053969 ENSRNOT00000078674 2 1 1 83 2 70494159 70496878 GCTATAAGAGAACAAGTAGAAGCC 59 70496917 70496938 CAACTGTTTGATTGTGGTTTCC 59 Novel Rattus norvegicus 81 AABR07003935.5 ENSRNOG00000047240 ENSRNOT00000072474 3 1 1 60 1 121187530 121187548 TGATCAGTCAGGCTACTGG 59 121187488 121187507 GGCTTTGGTTATACCCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015080.2 ENSRNOG00000059586 ENSRNOT00000079916 2 1 1 61 14 46653358 46653376 GAGAGGGTGTAAATCTCGC 58 46653401 46653419 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.2 ENSRNOG00000060832 ENSRNOT00000082275 2 1 1 62 Y 1625134 1625152 CAAGAAGTTAGACCGCAGG 58 1625178 1625198 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061491 ENSRNOT00000084575 3 1 1 76 4 66286622 66286640 ATGGTGCTCACTCATACAC 57 66286564 66286583 ATTTGCATGTCCTCTTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017141.1 ENSRNOG00000054783 ENSRNOT00000073371 2 1 1 60 15 12723351 12723372 CAAAGGGAAAGAAGGTAGATGG 59 12723312 12723333 CTCTTCTGAGACACATTGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052786 ENSRNOT00000077736 1 1 1 60 5 39533678 39533697 CCCTAGAGGTATTGCCAGTG 60 39533719 39533738 CCTTTGTGACACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052786 ENSRNOT00000077736 2 1 1 60 5 39533680 39533699 CTAGAGGTATTGCCAGTGTG 58 39533721 39533740 CTCCTTTGTGACACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051673 ENSRNOT00000084695 2 1 1 60 2 224165160 224165180 TCATGTATGTCAGTAGGTGGC 60 224165120 224165144 GAACACCAAACATAGACATATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.15 ENSRNOG00000050556 ENSRNOT00000072543 3 1 1 60 1 121197434 121197452 AGAATTGTTTGGTCAGGCT 57 121197392 121197411 TGGTTATACCCAGAACTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121415.2 ENSRNOG00000051581 ENSRNOT00000090449 3 1 1 80 2 178336418 178338343 CTCCAGTTCAGAAACCTACC 58 178338386 178338404 CAAGTAGAATCCAGCCTCC 57 Novel Rattus norvegicus 81 AABR07014983.1 ENSRNOG00000041525 ENSRNOT00000063278 1 1 1 76 14 42763726 42763750 GGAGTACCTAATAAATGTGACTTCC 59 42763783 42763802 GTCCCAAATATCACATGGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067763.1 ENSRNOG00000060678 ENSRNOT00000079058 1 1 1 111 9 61810875 61812547 TTTCTCTGAATGGGCTGTG 58 61812622 61812641 GCACTTGACAAAGGTAATGG 57 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000084349 3 1 5 93 2 123562591 123564855 GCTTCTTGTTGACAGGGTC 59 123564912 123564930 CCAGAGACAGTAGGATCCC 58 Novel InUTR Rattus norvegicus 81 AC242055.2 ENSRNOG00000058897 ENSRNOT00000079141 1 1 1 69 Y 1252659 1252679 CCTGAAAGCTTCTAGCTTCTG 59 1252709 1252728 GCAATAACTCTCAGAGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040938.1 ENSRNOG00000005402 ENSRNOT00000007173 1 1 1 83 X 115269632 115269651 GATTTGACCGAGATTCTGGG 59 115269695 115269717 CACATAGTCCCTTGGTAGAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055144 ENSRNOT00000089647 2 1 1 62 14 82322593 82322611 GGACGATACAGGGATTAGC 57 82322635 82322655 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042607.1 ENSRNOG00000060419 ENSRNOT00000078228 2 1 1 95 19 248693 248725 GATTAAAGAGCTGCAGGAGAG 59 249245 249263 GGATTTGGCCTGAAGTGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057781 ENSRNOT00000078471 3 1 1 60 12 48724371 48724392 GACATCTGTCATTTCTGATTGC 58 48724332 48724352 AGGTATTTACCTAGCTAGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060873 ENSRNOT00000083377 2 1 1 60 12 37657025 37657046 CAAACAAGCTCTCAAGAAGTCC 60 37657064 37657085 TCTAGTCAAGAAGTCATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057697 ENSRNOT00000080861 2 1 1 63 1 214170108 214170129 GCAGCACATACACTAAATTTGG 59 214170066 214170084 AAATCCTTGTGCAAGGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000043128 ENSRNOT00000040476 2 1 1 80 X 105501531 105501551 TAACAATGTCATGGCTAAGGC 59 105501593 105501653 GCATTGTCCTTAGCCACAG 59 Novel Rattus norvegicus 81 AABR07073021.2 ENSRNOG00000057061 ENSRNOT00000089432 3 1 1 89 4 82229036 82229054 GGAACGGCCAAATGTACTG 59 82228241 82228259 CTGAAGGATGGGAGACGAC 60 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 1 1 1 60 1 37989909 37989930 GTGGAAATTGTACAGGGATGTG 60 37988432 37989888 AAGTCCCAGGAACACAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 3 1 1 61 1 37988435 37989891 CAACCTTGTGTTCCTGGGA 60 37988392 37988410 TTTGCTCCAGAAACGTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000055376 ENSRNOT00000087776 1 1 1 60 12 37763036 37763059 CTTCTATCAAGTCTGTATGAGTGG 59 37762999 37763017 GTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052090 ENSRNOT00000089302 1 1 1 60 3 52704701 52704722 GTTACAAAGAAGATGGCATTCC 58 52704741 52704761 TTTAACCTAAGACCAGGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052090 ENSRNOT00000089302 2 1 1 60 3 52704703 52704723 TACAAAGAAGATGGCATTCCC 58 52704744 52704763 CCTTTAACCTAAGACCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000055559 ENSRNOT00000088779 3 1 1 60 14 30523638 30523658 CATAAGTTAATGCTTTGCGGC 59 30523598 30523618 CTCCTGAAACCCAAGATACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053169.1 ENSRNOG00000058767 ENSRNOT00000088395 1 1 1 104 3 94987837 94987856 TTTGACCAACGTAACCCAC 58 94987751 94987770 AAGAGGAAGTGATGAGTCCT 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060427 ENSRNOT00000080298 1 1 1 60 12 49964983 49965001 GAGAAGATTAGCATGGCCC 58 49965025 49965043 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000061095 ENSRNOT00000085456 1 1 1 60 12 24679715 24679733 GATCACATTCCTCCTTGGC 58 24679757 24679775 ACGAGAATGCTCCTCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139927.1 ENSRNOG00000052634 ENSRNOT00000087306 2 1 1 80 8 116349288 116349307 GTTCCTTCTGCTATTGGCAC 59 116349073 116349245 CTCTGCAGCACACTTAGGT 60 Novel Rattus norvegicus 81 AABR07015078.1 ENSRNOG00000055956 ENSRNOT00000085875 2 1 1 61 14 46650294 46650312 GAGAGGGTGTAAATCTCGC 58 46650337 46650355 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059208 ENSRNOT00000090598 3 1 1 61 2 251978159 251978182 GGGAAGATACCATAATCAAGAAGG 59 251978121 251978140 AACATCTGAAATGCAGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006860.1 ENSRNOG00000053424 ENSRNOT00000086885 2 1 1 60 1 260832286 260832304 GGAGATTCCCTCGTAAGGT 58 260832327 260832346 CACCAACTTACCACTCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045650 ENSRNOT00000052983 2 1 1 60 3 159426761 159426779 CTTGGAAGCTAAGCAGGGT 60 159426803 159426821 GTATTCCCAGGTGGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057115 ENSRNOT00000087409 2 1 1 60 1 88820825 88820843 CTGAGTGCAGTATCAGCTC 58 88820783 88820801 ATATTGTCCTCGGACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052019 ENSRNOT00000089598 1 1 1 60 1 224886941 224886960 TAGAACAGCCAGACAAGCTC 60 224886900 224886920 ACATTTAGCTTCCTGAACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0056.5 ENSRNOG00000052122 ENSRNOT00000090050 2 1 1 60 20 3403350 3403371 TACACAGAAGCTGTTAAAGGAG 58 3403311 3403331 GACCTCAAGTCTTCCAATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055556 ENSRNOT00000085949 1 1 1 63 2 142743361 142743379 ATGTCAGTAGGTGGCAGAG 59 142743404 142743424 GCTCTCCTACTATCATGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059040 ENSRNOT00000083583 1 1 1 60 10 93368835 93368853 CATCTGCCACACTGTTGAC 59 93368877 93368895 ACACATGCTTAGCTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059040 ENSRNOT00000083583 2 1 1 61 10 93368835 93368853 CATCTGCCACACTGTTGAC 59 93368877 93368896 GACACATGCTTAGCTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053179.1 ENSRNOG00000054519 ENSRNOT00000079990 2 1 1 80 3 95619616 95619639 GAGATTTCACCTCACATGCG 59 95619681 95619700 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA73 ENSRNOG00000061302 ENSRNOT00000087596 3 1 1 60 1 157541780 157541798 TTGTCCACCTGCATATTCG 58 157541738 157541757 TTTCCTCCTCAGTCATTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055044 ENSRNOT00000080505 1 1 1 60 3 129406932 129406952 TAAATGCAAGGTCATCCACAG 59 129406973 129406992 GATCTCTTACAGCTTCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009106.2 ENSRNOG00000057159 ENSRNOT00000079449 1 1 1 80 2 87028515 87028533 TCTGGAGCAAAGACCAGAG 59 87028574 87038879 GGATCATTGAGTGCTATTCCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061123 ENSRNOT00000080893 2 1 1 60 2 205892265 205892283 CTGCTATGTCACAGGTTGG 58 205892307 205892325 GAGAGCATAGACTTGGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132028.2 ENSRNOG00000057419 ENSRNOT00000089105 1 1 1 60 3 77961375 77961393 CAACAGTGGGTCTATCTGC 58 77961333 77961354 GATAACACCATAGGAGACAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040284.1 ENSRNOG00000059352 ENSRNOT00000085665 1 1 1 90 X 96863932 96864330 GATTCAGGGAACCAGTGGT 59 96864384 96864402 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07040284.1 ENSRNOG00000059352 ENSRNOT00000085665 2 1 1 92 X 96863930 96864328 TGGATTCAGGGAACCAGTG 59 96864384 96864402 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07031138.1 ENSRNOG00000030649 ENSRNOT00000043882 1 1 1 60 18 1412565 1412585 CAGAAGGCAAGAAATTTGACC 58 1412525 1412546 ACCTTGAAAGATTCACTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0737.3 ENSRNOG00000053007 ENSRNOT00000091351 3 1 1 90 9 73682950 73686349 TATCATGGAGCTCAGGAGG 58 73682878 73682899 GACACTGTCCTTCATATCAGTG 59 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000052763 ENSRNOT00000088796 3 1 1 60 2 95138753 95138772 TAGATTTGGAAAGCCTGGGA 59 95138794 95138813 CTGTGGGATGATTGATCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051996.1 ENSRNOG00000033278 ENSRNOT00000041305 1 1 1 60 3 31803156 31803175 CTAAGAGGCGAAACACTACC 58 31803196 31803216 CTTCGGTAGACAGTCTTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000052832 ENSRNOT00000077460 2 1 1 60 1 245898164 245898183 GAGGCAGAATAAACCTACCC 58 245898123 245898143 AATACAGACTAGGCACAGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000058946 ENSRNOT00000084089 3 1 1 61 1 190917942 190917960 CACTGAGCTGTCAAGAAGG 58 190917899 190917918 ATTATGTTGCCACTTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141028.3 ENSRNOG00000055364 ENSRNOT00000081389 2 1 1 80 X 5691105 5691128 GAGATTTCACCTCACATGCG 59 5691170 5691189 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07029192.1 ENSRNOG00000061166 ENSRNOT00000081865 2 1 1 80 10 12284300 12284322 AAGCTCTGTGTCCTTATTGTG 58 12284240 12284259 GAGTTGAGTCATCAGCAGTG 59 Novel Rattus norvegicus 81 AABR07058102.1 ENSRNOG00000059201 ENSRNOT00000079389 3 1 1 82 7 100335281 100335455 GGGACCACAGAAATAGCAG 58 100335217 100335235 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 3 2 4 63 9 88280199 88282536 TTTGATGGACCTCCAGGTC 59 88280154 88280172 GACATCTCATACCAGGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056430 ENSRNOT00000090553 2 1 1 61 6 77138529 77138547 CCTAGAGGCATAGTGGGTG 59 77138486 77138504 CTCTTCTCAGCCACCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052960 ENSRNOT00000086153 3 1 1 61 2 30166711 30166732 ACAAAGAGGAGTTCTCATTAGG 58 30166754 30166772 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057695 ENSRNOT00000082465 3 1 1 60 2 153680874 153680896 GAAAGACATTCTTCAGTCAAGGG 60 153680836 153680856 TGTTTAGAGGGTTAAGCAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122990.1 ENSRNOG00000033642 ENSRNOT00000041248 1 1 1 61 15 27164517 27164538 CTAACTTAACCCACTTAGTCCA 57 27164476 27164495 GCCAAGAGTATCAAGTGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041725.1 ENSRNOG00000040189 ENSRNOT00000061851 1 1 1 113 X 137818861 137818881 TGGACCAGAGAAACACCTC 59 137818766 137818790 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000053170 ENSRNOT00000082948 2 1 1 65 9 24194570 24194588 CATTGTTCTCCTGGTGTGC 59 24194523 24194543 GCACAAATAATGCACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051806 ENSRNOT00000088975 2 1 1 60 9 16017834 16017852 AATGCAAGAGGCACAACAG 59 16017874 16017894 AAATGAGAACTGGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061674 ENSRNOT00000079878 1 1 1 60 1 253866779 253866797 CCATAGAGGCATTGCTGGA 60 253866816 253866839 CTCCTCTACCATGTATTGATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054807 ENSRNOT00000080211 1 1 1 60 1 141076319 141076337 AGGAACCTCCAACAAGCTC 60 141076277 141076295 AATGTCTTGTCTCTGCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057625 ENSRNOT00000078387 3 1 1 60 6 83242300 83242319 GTACACAAGTAGCTGCACTC 59 83242259 83242277 ACCCTACGTTCCTACAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028779.1 ENSRNOG00000016710 ENSRNOT00000022385 3 1 1 60 17 85948024 85948042 CCAAGTGGTTGATGGAGAC 58 85947982 85948000 CTGTCTTTCTGGGCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058630 ENSRNOT00000085569 2 1 1 60 6 93920689 93920708 TGGTCAAGGGTATATGAGCA 58 93920648 93920668 GTCTGAGAGCTTGTTTGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055477 ENSRNOT00000091269 3 1 1 60 1 163463411 163463431 CCAAAGTTCAGGAAACTTGAC 58 163463451 163463471 GAGAGCATGAACCTAGTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060321 ENSRNOT00000084828 3 1 1 70 1 189016603 189016621 TAGAGAAACTGCAGGTGTG 57 189016551 189016569 AGACATAGCCTCTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050321.2 ENSRNOG00000060181 ENSRNOT00000091640 1 1 1 118 5 161035118 161035136 GAGCTCAAGGTAGGGAGAG 59 161035018 161035036 ACAATGCAAAGCCATCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048971 ENSRNOT00000074679 1 1 1 60 1 217417675 217417694 GCCTAGTCTTAGCTGATCTC 57 217417717 217417735 CCCATACAAGTGCTAACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059853 ENSRNOT00000086327 2 1 1 60 6 73437915 73437937 GGAACGATACAGAGAAGATTAGC 59 73437877 73437895 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA54 ENSRNOG00000052577 ENSRNOT00000090108 1 1 1 60 1 216733169 216733188 GCTACAGGATTTCCAGTGAC 58 216733128 216733146 GACCTGAAACTGAAAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.2 ENSRNOG00000059176 ENSRNOT00000086458 2 1 1 86 4 101909425 101909807 CTCTGGATCCAGGAAACCC 60 101909857 101909875 GATGGAGGCTGATTGTCCA 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058615 ENSRNOT00000085421 1 1 1 60 1 197983400 197983421 AGTAAGATTAGTATGGGCCCAG 59 197983361 197983379 AATACGGAATGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076556 3 1 3 98 2 208416315 208419706 GGGTCCAGGTTTGTATAATGG 59 208416237 208416255 CAGGAAGAGGTGGTAGAGG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000059932 ENSRNOT00000088663 1 1 1 89 14 48993478 48993496 ATCACTGTAGGTGTGGCTG 59 48993543 48993567 CATGGTCAGATCTTTGAATGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000054518 ENSRNOT00000079318 2 1 1 100 14 16471870 16471889 GCCAGTTAAGCTAATCAGGT 58 16471789 16471807 TCATACAAGCAACAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 1 1 1 64 1 169095074 169095093 TACTTCACATCTGTGCGTG 58 169095121 169095139 AGCGGTGTACAAGAGACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 2 1 1 63 4 183941460 183941480 AGAAGGATCCTGGAGAGCA 60 183941505 183941525 GATGATACTGCTTCAGACTCG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056613 ENSRNOT00000082781 1 1 1 60 14 64848453 64848471 TGGTCAAGGCTATACGAGG 59 64848495 64848513 CCTTGAGAGCTTGTTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041894 ENSRNOT00000063647 2 1 1 60 6 54541832 54541851 GAGCTCACCAATCTTGTCTG 59 54541874 54541892 GGTCATACTAACCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001899.1 ENSRNOG00000058436 ENSRNOT00000089298 1 1 1 80 1 61504258 61506968 TGGTCTCTGTTGAGAACTACTG 60 61507007 61507027 CATTACCCTGACAAGAGTCCT 59 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000058803 ENSRNOT00000087736 1 1 1 60 1 56873040 56873061 GACAACAGAAAGTCAAGAACAG 58 56873001 56873020 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017804.1 ENSRNOG00000052364 ENSRNOT00000079661 1 1 1 84 15 31209813 31209962 AATGTTTGGAGGAAGCAATGG 60 31210007 31210026 GTTCACAGTCAAAGAAGCCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060253 ENSRNOT00000083836 2 1 1 60 13 34432175 34432193 GTGGCAGAAAGGAGATAGG 57 34432133 34432154 CATTCACATATTTACGGGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054997 ENSRNOT00000084153 2 1 1 60 10 21386900 21386919 TGTGCATTTCTCCCAAAGTC 59 21386859 21386878 CTTGCTGTAGACTGGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068253.1 ENSRNOG00000022614 ENSRNOT00000030314 1 1 1 60 9 93017837 93017856 TCAAATCTACTGAGAGCCGA 58 93017877 93017897 TACTCTTGTTCTTCTTGTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054473.1 ENSRNOG00000040443 ENSRNOT00000062196 1 1 1 60 3 155351403 155351421 CATTTGACCTGTCTGTCGG 59 155351445 155351463 GACAGACAGACCGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032261.1 ENSRNOG00000024970 ENSRNOT00000033372 2 1 1 60 18 57444718 57444740 GTTCGATATCATAGCTACTGAGG 58 57444680 57444698 GCCGAGGAATTTGGATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058360.1 ENSRNOG00000044626 ENSRNOT00000069893 1 1 1 165 7 111756172 111756193 CCTTACTTCACTTCCATATGCT 58 111756314 111756337 CCCTATAAGAATTAGCTTCTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051971 ENSRNOT00000083852 3 1 1 61 13 54153017 54153035 CAACACAGAGAAGATCGGC 59 54152974 54152994 GGACCACTTCATAAATTCGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057976 ENSRNOT00000091632 2 1 1 61 3 156106688 156106710 GATACAGAGAAGATTAGCATGGC 59 156106729 156106749 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006504.1 ENSRNOG00000031086 ENSRNOT00000042738 1 1 1 60 1 237574993 237575011 AAGTCCAAGCTTCCCTCTC 59 237575035 237575053 GGTTTGCCTTCTGCATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017798.1 ENSRNOG00000057267 ENSRNOT00000084286 1 1 1 80 15 31164444 31164636 AGATTTGCTGGGTGAGAGG 59 31164680 31164698 TCAGAGCAGGATTGGTTCC 59 Novel Rattus norvegicus 81 AABR07062152.1 ENSRNOG00000060202 ENSRNOT00000085918 1 1 1 80 4 162675229 162675249 GGGATGAATGTAAACAGACCT 58 162672171 162675187 GAAGGAACTTCCGTTCGTC 59 Novel Rattus norvegicus 81 AABR07062152.1 ENSRNOG00000060202 ENSRNOT00000085918 2 1 1 80 4 162677883 162677904 CGTTCAACAGATCAAAGAACAG 58 162675310 162677843 CAATTTCACTGCCTTTGTGC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059946 ENSRNOT00000088106 2 1 1 60 20 14164616 14164634 CTCTCCTGCTAGAACCTCC 59 14164574 14164592 AAAGCTGCTTGCTAAAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020835.1 ENSRNOG00000036368 ENSRNOT00000054487 1 1 1 60 13 43385471 43385489 CAACGCAAACTGACATGCT 60 43385512 43385531 AGAGTGAGGCACTCAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021734.2 ENSRNOG00000059957 ENSRNOT00000079363 2 1 1 60 13 88556912 88556931 CACATGGGAGTTTCTCAGAC 58 88556953 88556972 TCCATCCTGTTTCAGAACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 2 1 1 63 5 124275985 124276008 CAATCGCCCAGTGAAATCG 60 124276035 124276053 GTATCTGCCATTGGTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000056866 ENSRNOT00000080054 2 1 1 60 10 76580408 76580427 CTTGACAAGAGCCTAAAGCA 58 76580367 76580385 TAGATGCCACAAAGTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061902.1 ENSRNOG00000000021 ENSRNOT00000000022 1 1 1 75 4 151987132 151987152 TACTTGGACGTCCGAAAGG 59 151987191 151987209 ACACTGACTTGTGGTAGGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07065498.1 ENSRNOG00000051719 ENSRNOT00000079807 2 1 1 80 6 132117929 132121552 GGAAGTCCTACAGAACGGTC 60 132117868 132117887 TGTCCTGCTGAACTGTAGAC 60 Novel Rattus norvegicus 81 Hist1h2bh ENSRNOG00000058187 ENSRNOT00000086538 1 1 1 60 17 44520025 44520043 CGTGAACGACATCTTCGAG 59 44519983 44520001 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054253 ENSRNOT00000086818 3 1 1 60 3 119097364 119097385 TCATCTATTACAGTGTGGATGG 58 119097325 119097345 AACTTATGCCAAGTTTCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021527.1 ENSRNOG00000061773 ENSRNOT00000090371 2 1 1 67 13 76595610 76595630 GGGCTGTTGATACAATTTCTC 57 76595656 76595677 GAGTAGGATATTGACGATGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049554.1 ENSRNOG00000043738 ENSRNOT00000069005 1 1 1 62 5 128398353 128398371 CTTTGTAGTCCAGGCTGGT 59 128398309 128398327 CAGCACTTAGGAGGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054923 ENSRNOT00000082051 1 1 1 60 1 259193052 259193070 GAGAAGATTAGCATGGCCC 58 259193010 259193028 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054923 ENSRNOT00000082051 2 1 1 60 1 259193059 259193081 GGAACGATACAGAGAAGATTAGC 59 259193021 259193039 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055104 ENSRNOT00000084472 3 1 1 60 3 142940806 142940826 GTAACTGCTGTGTCACATGTG 60 142940845 142940866 AGGTAAACATAGCCTTTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059610 ENSRNOT00000084040 1 1 1 60 10 46960678 46960698 GTAATTTACACAGCCAGACAC 57 46960718 46960738 CGTGATCAGCCATCTTAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052197 ENSRNOT00000085551 1 1 1 60 3 79566466 79566484 AGAGACTTTGACAGCCCAG 59 79566506 79566526 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060244 ENSRNOT00000081528 1 1 1 60 5 135207860 135207878 GAGAAGATTAGCATGGCCC 58 135207818 135207836 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056518 ENSRNOT00000091559 1 1 1 60 3 154867006 154867024 TTGCTGAAAGCCATTTCCC 59 154867048 154867066 AAGCACCAGCATTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000056518 ENSRNOT00000091559 3 1 1 60 3 154866975 154866994 GCTCTGGTCATCCATAATGC 59 154867016 154867035 CCTTCAAACACGGGAAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054159 ENSRNOT00000079945 1 1 1 60 15 93623350 93623372 CGATACAGAGTAGATTAGCATGG 59 93623312 93623331 GGAAGTCTTCACGAATCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054094 ENSRNOT00000077343 3 1 1 61 13 49302653 49302675 CCATACAGAGAAGATTAGCATGG 59 49302614 49302633 GAATGCTTTGCAAATTTCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061558 ENSRNOT00000086826 1 1 1 60 3 93005645 93005665 TACAGAGAAGATTAACACGGC 58 93005605 93005625 CAGAAAGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057150.1 ENSRNOG00000058424 ENSRNOT00000090748 3 1 1 80 7 57814158 57816500 CCTATTATGGTAACTTGCGGC 59 57814098 57814120 CATTACAGGAGATCACAACAGAG 59 Novel Rattus norvegicus 81 LOC499229 ENSRNOG00000045560 ENSRNOT00000073421 1 1 1 60 1 173255291 173255310 ACAGTCACAAGAATCAGCAG 58 173255329 173255351 ACTCTAATGAAGGACACGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052252 ENSRNOT00000084314 2 1 1 60 13 80079629 80079648 GAGAGGCTACGTCTATGCTC 60 80079670 80079689 TTGGGCTGCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054397 ENSRNOT00000078253 2 1 1 61 6 125593238 125593256 TACTTCAGCAGCACATGTG 58 125593281 125593299 CTACATAAGGGCCATCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058889 ENSRNOT00000081541 3 1 1 60 1 251058171 251058190 CAATGATCAAACGGGAAAGG 58 251058130 251058148 AAATAACTCCAGACCCAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060121 ENSRNOT00000078069 2 1 1 60 7 143974994 143975014 CTTGGAACAACACAGAGATCC 59 143975030 143975054 CTTCATGTACTTGTGTATCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057970 ENSRNOT00000079471 2 1 1 62 15 41941450 41941468 AAAGAGACCATTGTGGCAG 58 41941406 41941425 GTTGCTATAGCACAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566029 ENSRNOG00000052725 ENSRNOT00000084666 3 1 1 80 7 125368100 125378977 TACATGCACAACAACTACACTG 59 125368041 125368060 TAGATCCAAGACCAGCAGTG 59 Novel Rattus norvegicus 81 AABR07017781.1 ENSRNOG00000053359 ENSRNOT00000088134 1 1 1 91 15 31010919 31010937 TACTCCTAGGCCTTCACCT 59 31011129 31011148 GACTGTCAGAGATTGGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000059617 ENSRNOT00000086312 2 1 1 60 10 106084725 106084748 TTCAGTCAAGGGTATATGAGTAGC 60 106084767 106084785 TTGAGAGCTTGTCAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053352 ENSRNOT00000089317 2 1 1 60 13 3086753 3086771 GGTGACAGTGAGCAAAGAG 59 3086711 3086731 AATTAGATCTCCACAGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019437.1 ENSRNOG00000046145 ENSRNOT00000074661 3 1 1 62 15 105371103 105371124 AATTAGTGAACAAGGGTGAGAG 58 105371147 105371165 CAAGACTACCAGCCCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052403 ENSRNOT00000080653 1 1 1 70 13 71532605 71532623 AAAGTATTGCAAGTGCGGC 60 71532553 71532573 AGACATGACCTCTTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061541 ENSRNOT00000077155 3 1 1 60 15 83813180 83813202 GATACAGAGAAGATTAGCATGGC 59 83813142 83813160 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021706.1 ENSRNOG00000049253 ENSRNOT00000074216 2 1 1 60 13 86733173 86733191 AACAGGTCACCTGATGGTG 60 86733213 86733233 ACAACTCATAAAGGCTGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000052741 ENSRNOT00000087314 3 1 1 85 10 85724722 85724740 TTGCTGATGACCCACTGAG 60 85724655 85724676 GTTAAACAACACAGCATGTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000060467 ENSRNOT00000090822 2 1 1 60 5 116923656 116923674 CTGGTCCAAAGGTAGTGAG 57 116923697 116923716 ACAGGAGTTCAATCTGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055815 ENSRNOT00000085244 3 1 1 60 20 20782604 20782623 GAACATGTTCCTGTTTGTGC 58 20782563 20782584 GTGAATCAGAATCAGACACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061082 ENSRNOT00000084477 3 1 1 67 7 140904476 140904494 TTATCCATTGCACTCCGGA 59 140904525 140904543 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052711 ENSRNOT00000085261 1 1 1 60 10 103384248 103384268 CCTGCTACAACATCTAAACAC 57 103384290 103384308 CTGTCAGAGGAGATTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044282 ENSRNOT00000069549 3 1 1 78 6 109955207 109955225 TTTAGGTCTATGGCCTCGC 59 109955147 109955165 CATCCAAGTACCAACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066532.1 ENSRNOG00000050812 ENSRNOT00000074139 1 1 1 60 9 10900365 10900383 GGTTATGAGCCACCATGTG 59 10900405 10900425 TTAAGAGCACTTCCAGAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057974 ENSRNOT00000084253 2 1 1 60 20 2565493 2565515 CAATCTGTCTACCCATTGATCAC 59 2565455 2565477 CTTAGAGCTAGTCAGATCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059639 ENSRNOT00000087755 2 1 1 60 4 40051849 40051870 ATTAGAATCTCCAACTGCATGC 59 40051810 40051828 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036007.1 ENSRNOG00000053790 ENSRNOT00000081099 1 1 1 85 12 30441688 30441706 CAGATTCCGAAGGTCCCTC 60 30443380 30443475 CAAGATAAGTACAGCATCTAAAGGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000053579 ENSRNOT00000087004 1 1 1 60 15 37261531 37261549 GGCAGCACATACGATAGAG 58 37261489 37261508 GATTTGCATGTCATCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000051425 ENSRNOT00000088417 2 1 1 60 6 80258598 80258616 AGAGTACACTGACACTGGC 59 80258556 80258574 TGAATCTGGACCAGTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044429 ENSRNOT00000069696 1 1 1 60 15 46039589 46039608 TGGAAACTAAACAGGTCAGG 58 46039629 46039649 CCAGAATCTCCAGGTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.3 ENSRNOG00000056474 ENSRNOT00000084443 1 1 1 60 13 52266800 52266819 GACCAGATGCCAAGATGGA 60 52266758 52266779 TCCTCTATTGTCATCCAGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000055610 ENSRNOT00000083790 2 1 1 60 4 179966449 179966470 GATCTGTTATGCCATTGATCCC 59 179966490 179966509 AAATATACGTAGGCAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689958 ENSRNOG00000055798 ENSRNOT00000091497 3 1 1 60 1 64487085 64487105 GGAATAGCTTTCTTCAACACC 57 64487127 64487145 TGAGGCAGTAGATGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057445 ENSRNOT00000090205 3 1 1 60 X 116177095 116177113 TCACATGTGCTTCAGTAGG 57 116177136 116177155 TCAGGATGTTGAAAGTAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060313 ENSRNOT00000078449 2 1 1 60 7 98454680 98454698 GGTGTGACTGACCTAGCTG 60 98454722 98454740 TGTACAAGGAGTGGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054382 ENSRNOT00000090906 3 1 1 86 X 49814544 49814562 AAGAGTGGCTTCTGGAGTG 59 49814609 49814630 CATTTCCATTTCTTTCCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059289 ENSRNOT00000084347 1 1 1 80 18 34418237 34418256 ACCAATGAGGTTTGACTGTG 58 34418296 34418317 CAGTTACTCTGCTAATGAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000385.1 ENSRNOG00000055421 ENSRNOT00000089608 3 1 1 61 1 11873244 11873265 TGGCATTGCAGTTGATATTCTG 60 11873286 11873305 TAAACGAGGACCATGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058532 ENSRNOT00000089267 2 1 1 61 10 66946187 66946206 CACCATACAGAGACTCACAC 58 66946229 66946248 GGACCGTTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061115 ENSRNOT00000081425 2 1 1 60 18 26873353 26873372 CAGTAGGTGGCAGAGAAGAG 60 26873389 26873413 CAGACATTTATAGGTCAGAAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054823 ENSRNOT00000079843 1 1 1 65 6 86491654 86491672 AATGAGGTTTATCCGAGGC 57 86491700 86491719 AATAAGCCTCAGTATGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056511 ENSRNOT00000082954 1 1 1 60 7 117016972 117016990 GGGCTCTACACTTGGACAG 60 117017014 117017032 GTGACAGATACAGCTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060254 ENSRNOT00000086107 1 1 1 69 3 88742405 88742424 TCTGAGGCACTATTACTGCT 58 88742456 88742474 AAGAGGCTTACCAGTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059332 ENSRNOT00000082558 2 1 1 60 9 112101919 112101941 CGATACAGAGAAGATTAGCATGG 59 112101961 112101979 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA16 ENSRNOG00000059814 ENSRNOT00000078280 2 1 1 60 X 62313195 62313213 TGGTCAAACACAAGTCCCA 59 62313234 62313255 TTACTGCAAATGGAACCATGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054994 ENSRNOT00000082070 3 1 1 60 7 126244059 126244080 GTGGTGTTGTTCTATCAGTCAG 59 126244020 126244039 CAAGCTCAGATGAACAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 NRON ENSRNOG00000058888 ENSRNOT00000084664 1 1 1 60 3 12870644 12870665 GATGACATATTCACAACACTGG 58 12870686 12870704 TTAGCCTAATGATTCCGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 3 3 3 90 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016318 74016336 GTGGAGGCAGATTCTTTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060592 ENSRNOT00000078062 2 1 1 60 4 168018478 168018497 GAGGCTATGTCTGTGTTCAG 58 168018437 168018458 TGTTACGCTGCTTATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053570 ENSRNOT00000078965 3 1 1 62 4 8204292 8204311 TCTGTCACCTCACTGATGAC 59 8204331 8204354 GGGTACATTAGACTAAACATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056247 ENSRNOT00000083070 3 1 1 60 18 40542273 40542292 TTCGGTCAAGGGTATACGAG 59 40542314 40542333 TTGAGAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057723 ENSRNOT00000089109 3 1 1 60 5 86556455 86556474 TGAGTTCTGCTTCTAGAACC 57 86556414 86556435 GACACTATTAGGAAATGGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052048 ENSRNOT00000085173 3 1 1 60 15 101593045 101593065 GCAGTACAGAGTAGATTAGCA 57 101593005 101593023 ATGCTTCACGAATTTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052447 ENSRNOT00000087273 3 1 1 60 15 32756616 32756634 AGACAACCTTACCCGAGAG 58 32756657 32756676 TAGCAGCTGCTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057123 ENSRNOT00000077212 1 1 1 64 15 14916979 14916997 GTGTCAGTAGGTGGCAGAG 60 14917019 14917043 GATGTTCATAGGTAAGAACACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055395 ENSRNOT00000081668 3 1 1 61 7 45856548 45856569 CACAGAGAAGATTAGCATAGCC 59 45856588 45856609 GTGGAACACTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 3 2 2 60 6 143194560 143194579 AAGCATTCCTCAAGATCACC 58 143194519 143194537 CGAGCACAGTAGTATGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061874.1 ENSRNOG00000046940 ENSRNOT00000072408 1 1 1 60 4 150484502 150484520 TCTCTGATGGACGGTTAGG 58 150484543 150484562 TGAATGCAATGCATGTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000018378 2 1 2 81 17 13534917 13536195 CCTCGTGCCTGGATAAGAG 60 13536239 13536258 TGGAAACACTTGAGTTCTGC 59 Novel Rattus norvegicus 81 AABR07059527.1 ENSRNOG00000060833 ENSRNOT00000082968 2 1 1 124 4 22986945 22986965 TTTGACTCTGTTACAGAGGGA 59 22987054 22987075 GGTATTTAGGCACTGAAACCT 58 Novel Rattus norvegicus 81 AABR07006333.1 ENSRNOG00000050414 ENSRNOT00000074256 1 1 1 80 1 229206224 229206245 TGGTACAAGTTGATAAGGGAG 57 229206164 229206183 TCGTCTCAGGAATTTCTCTG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000057334 ENSRNOT00000080378 3 1 1 60 1 124480772 124480791 GCGCCTGATGACTATAAGGA 60 124480814 124480832 TACCACCAATGGGTCAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058535 ENSRNOT00000087296 3 1 1 60 20 7437478 7437496 AGGGTAAAGGAAGTCTCCG 58 7437436 7437454 CAGGATCCAAAGAGGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044437 ENSRNOT00000069704 3 1 1 60 20 55529417 55529438 TAGTCTGATCTTGGAAGCTAGG 59 55529459 55529477 GGAAATCTCCCACTCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106225.1 ENSRNOG00000061557 ENSRNOT00000073359 1 1 1 60 20 7888019 7888037 TGAACTCTGGGATCCTCCT 59 7888058 7888079 GGTAGTGTATGCCTTTAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106225.1 ENSRNOG00000061557 ENSRNOT00000073359 2 1 1 60 20 7888017 7888035 CCTGAACTCTGGGATCCTC 59 7888056 7888077 TAGTGTATGCCTTTAATCCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056503.1 ENSRNOG00000053843 ENSRNOT00000077976 3 1 1 60 7 27438564 27438584 GACCAAATCAGAAGTATGCGG 60 27438603 27438624 CAGCAAGTCCAATATTCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057066 ENSRNOT00000077536 3 1 1 73 11 54256344 54256362 ATGCCAGAGTAACGGAGAG 59 54256398 54256417 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041708 ENSRNOT00000063461 1 1 1 60 7 77652757 77652775 CCTGAATGCACCCAATCTC 59 77652798 77652817 GTACTAACCAGGACTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 3 1 1 84 7 121773598 121773618 AAGACCCTTGACTGCACTC 60 121773666 121773684 CCTTGATCCTCTCCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000034695 ENSRNOT00000052818 1 1 1 60 19 38074294 38074314 CCTGATCTTGTCTGATCTCGT 59 38074254 38074273 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054066 ENSRNOT00000080268 1 1 1 60 18 58224001 58224020 TGGAACAGTACAGGGAAGAG 59 58223960 58223981 CTCATGAATTTGCATGACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057652 ENSRNOT00000078104 1 1 1 60 19 24845074 24845098 CAATACAGAGAAGATTAGCATGGTC 60 24845115 24845134 AACGATTCACGAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056488 ENSRNOT00000084914 1 1 1 60 19 49521684 49521705 GGTTTACCCATTGTTCTCAGTG 60 49521645 49521663 AGATGAGTTTGCCTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061437 ENSRNOT00000077190 2 1 1 66 11 67314312 67314333 CGGCATGTCTATTTAACATTGG 58 67314267 67314285 TGTACATCATCCTTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060986 ENSRNOT00000084951 1 1 1 81 11 35841920 35841938 ATGAGGTTTATCCGAGGCG 60 35841983 35842001 GGGCTGAGAGGATTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042891.1 ENSRNOG00000047770 ENSRNOT00000073653 3 1 1 69 19 14007352 14007370 TGAGATCCAGCTGTAAGGC 59 14007403 14007421 ATGGTACCACCACAAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000056676 ENSRNOT00000088693 3 1 1 60 18 10922312 10922334 CACTATGGAAATCAATAGGGCAG 59 10922354 10922372 TCTGGCAAGGTTTCTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115670.2 ENSRNOG00000060002 ENSRNOT00000077475 1 1 1 60 17 45745902 45745923 GAAAGATTACTTCAAAGCAGGG 58 45745863 45745883 AAACTCAAATACCTCTCGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061323 ENSRNOT00000084037 2 1 1 60 9 64111872 64111890 GTAGGTGGCAGAGAAGAGG 59 64111830 64111851 CATTCAAATGTTCATGGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052928 ENSRNOT00000077344 1 1 1 68 11 31688152 31688170 TTGACCTCTGTGATTTCCC 57 31688102 31688122 AGTGTAATTTCCCACTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058294 ENSRNOT00000085179 1 1 1 60 11 18918842 18918862 ATGGCTGCTATGTCATATGTG 58 18918883 18918902 CTGAGCAGTCATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058294 ENSRNOT00000085179 3 1 1 60 11 18918841 18918862 TATGGCTGCTATGTCATATGTG 58 18918883 18918901 TGAGCAGTCATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051652 ENSRNOT00000090389 3 1 1 62 19 32814401 32814420 TCTGAGGTGCGATTATTGCT 60 32814445 32814463 ATTGCAAGTTGTCATGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056824 ENSRNOT00000090116 3 1 1 60 19 22568579 22568598 TTGAGCATCTGTTACCAGGG 60 22568619 22568639 AGAGGGAACTTTCACCTACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000053608 ENSRNOT00000079078 1 1 1 60 3 9895531 9895552 GGGTAAAGGTTGCTATCTAAGG 58 9895492 9895512 GATCGCATTACTTAGGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052032 ENSRNOT00000078487 2 1 1 60 18 270873 270895 GGAAGGATACAGAGAAGATTAGC 58 270915 270933 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056291 ENSRNOT00000082768 2 1 1 60 18 34128196 34128219 CACACTTGATCAAATAGGATGACC 60 34128236 34128256 CCTCTTGAATGAAGATGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000057229 ENSRNOT00000085729 1 1 1 60 5 29494866 29494887 GTAATTTACACAGCCAAACACC 59 29494906 29494926 GCATACCAGCCATCTTAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051638 ENSRNOT00000086406 2 1 1 60 7 38426757 38426775 AGTTGGAATAGGAGCTTGC 58 38426715 38426733 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059511 ENSRNOT00000088989 2 1 1 60 4 179054880 179054898 ATGGCAGAGAACTGAGAGG 59 179054838 179054856 GTCAGGGTTGTTCACAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.4 ENSRNOG00000060540 ENSRNOT00000087074 2 1 1 85 X 152886089 152886965 ATCAGCAGGATTAAGCCCA 59 152887278 152887297 CCTGCACAAGATCTAGATGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000056761 ENSRNOT00000091455 2 1 1 60 6 111479713 111479735 GATACAGAGAAGATTAGCATGGC 59 111479755 111479773 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053209 ENSRNOT00000077300 1 1 1 60 20 56179338 56179356 AAGATCCTTATGGCTCGTG 57 56179296 56179315 AGTCACACTCATTCTTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000061903 ENSRNOT00000082308 3 1 1 89 6 43365336 43365355 TTTGCTAGTGACCCACTGAG 60 43365407 43365425 TTGACTGAAGCAAACAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.1 ENSRNOG00000054825 ENSRNOT00000077415 1 1 1 60 2 52618950 52618970 GTCAACCACTTCATTTCAGCA 60 52618910 52618928 TGAACAATCCAGCCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033524.1 ENSRNOG00000032213 ENSRNOT00000046693 3 1 1 60 11 25674468 25674487 AGTGAGTAGATGCACAGAGG 59 25674427 25674446 CTTGGTCTTGATGGTCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056346.1 ENSRNOG00000036410 ENSRNOT00000054522 2 1 1 60 7 22656950 22656974 TACTAATAGAGAAACACTGTCTCGG 60 22656914 22656932 GAGCCTAGCCTTTAATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056346.1 ENSRNOG00000036410 ENSRNOT00000054522 3 1 1 62 7 22656950 22656974 TACTAATAGAGAAACACTGTCTCGG 60 22656912 22656931 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054030 ENSRNOT00000091872 1 1 1 60 11 85129457 85129475 GCCACCTACAGGTAAAGCA 60 85129415 85129435 TTCTATGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061501 ENSRNOT00000085842 1 1 1 60 9 83766090 83766109 GTACTCCAGATGTCCTGACC 59 83766049 83766069 AATTATTCAGCCCACTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049149.1 ENSRNOG00000024197 ENSRNOT00000029509 3 1 1 60 5 107608848 107608866 ATGAGTTCCCAGAAAGGCA 59 107608806 107608827 TGAATGTATTCTGGTGCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055521 ENSRNOT00000052795 1 1 1 60 9 112906013 112906031 CCCGATCTCGTCTGATCTC 59 112905971 112905990 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127106.1 ENSRNOG00000061321 ENSRNOT00000089291 1 1 1 64 2 3124296 3124316 GTAACCTCCCTGCTCTGTC 60 3124343 3124362 AATGACTGTCTGTTCTGCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07065043.1 ENSRNOG00000056556 ENSRNOT00000089907 1 1 1 60 6 105394682 105394701 TTTGGACTTCTAGCCTCCAG 59 105394641 105394661 TCTAGATGGCTTCTGTCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059046.1 ENSRNOG00000041521 ENSRNOT00000063274 2 1 1 60 4 2561385 2561403 GATTCCTTCATAGCTGGGC 58 2561343 2561361 TCTTCCTCCCAATTGCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061808 ENSRNOT00000092059 3 1 1 60 6 10897211 10897230 TTTCCTCTTTCGTTGCTCTG 59 10897170 10897191 AGGTCATCTTCAACAGAATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058687 ENSRNOT00000077234 1 1 1 60 11 2143691 2143715 GAGAGGAAAGAGGTTATTTCTACAC 59 2143730 2143751 CTAAGCATTCAGTTTGTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054114 ENSRNOT00000082977 3 1 1 60 11 16497651 16497673 GATACAGAGAAGATTAGCATGGC 59 16497693 16497711 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061178.1 ENSRNOG00000054121 ENSRNOT00000085062 1 1 1 82 4 108701000 108701020 CTTGCAAACCGCTTTAAAGAG 59 108696741 108700956 TCCTTCAGCTCCTGTTGTC 59 Novel Rattus norvegicus 81 SCARNA18 ENSRNOG00000051481 ENSRNOT00000090549 1 1 1 60 18 70733268 70733286 CCGATGATGACATGACCAC 58 70733226 70733244 CAGCACAATCCATCACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.4 ENSRNOG00000057681 ENSRNOT00000090704 3 1 1 69 6 140586985 140587004 CAGCCATGTATTACTGTGCA 58 140585093 140585111 GTTGTGATGCCGAAGTAGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD113 ENSRNOG00000053839 ENSRNOT00000084683 3 1 1 60 6 133821533 133821551 GTGATGAGATCTGGTGGTG 58 133821572 133821593 TCAGATATCTGGATACTTGGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131848.1 ENSRNOG00000005898 ENSRNOT00000007732 1 1 1 80 3 76154752 76154775 TTCTCCATCTACTCTGTTACTCTG 59 76154811 76154836 CATGGGAATGTGTAAAGGACTG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056812 ENSRNOT00000091526 2 1 1 65 11 10610102 10610120 TTACCCATTGCACTGTGGA 59 10610055 10610074 TATCAAGATTCCTTCCGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033287.1 ENSRNOG00000055793 ENSRNOT00000090586 2 1 1 161 11 15858254 15858272 ACAGATAGCTTAGCCAGCA 59 15858111 15858129 GAACAGCTGGATAAAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053251 ENSRNOT00000091517 1 1 1 91 4 175972565 175972583 TGAGGTTTATCCGAGGCAC 60 175972492 175972510 TACCACTGAGCTAGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000057568 ENSRNOT00000084982 1 1 1 60 11 61751953 61751973 GTGGATAACAATGGGCAAGAG 59 61751994 61752013 TCTGAGAAGAAACAGCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060397 ENSRNOT00000084301 2 1 1 63 11 16763468 16763487 TGTGTCAGTAGGCAACAGAG 60 16763513 16763531 CGTTCATAGGTGGGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.1 ENSRNOG00000018537 ENSRNOT00000024998 2 1 1 66 1 167685252 167685273 GTGGTCTTGAGAAGTTTCTGTG 60 167685301 167685319 CATTGCTGTGGCAGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060151 ENSRNOT00000079213 1 1 1 60 4 52596423 52596442 CACAGGTGCATCAGTATGTG 59 52596382 52596402 GTCAGAACAGGGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076841,ENSRNOT00000085052,ENSRNOT00000088581 1 3 6 60 10 74882539 74882558 CTGCCTGTACTTCATCTCAC 58 74882902 74882920 TTCCAAAGTGCTCGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055628 ENSRNOT00000090915 3 1 1 60 9 15916205 15916225 GAGAAGATTGCATGATCCCTG 59 15916247 15916265 CAATATGGAACGCCTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055497 ENSRNOT00000080369 3 1 1 60 7 126242463 126242481 CTCCATCCACTGCATACAC 58 126242421 126242439 ATTCCCACTTCTCAGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060183 ENSRNOT00000077780 1 1 1 60 7 53616613 53616633 ACCACAACTGGAAGGATAGAG 59 53616573 53616592 TCTGTATGCTATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063424.1 ENSRNOG00000060896 ENSRNOT00000082885 2 1 1 61 6 30639056 30639074 GAGAGGGTGTAAATCTCGC 58 30639099 30639117 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108351.2 ENSRNOG00000060783 ENSRNOT00000090244 3 1 1 69 7 143492761 143492779 CCTCATACTGGGCCTTGAC 60 143492812 143492830 CTGTCCATGGACAACAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057015 ENSRNOT00000080726 1 1 1 60 9 56137057 56137081 AGTCAAGGGTATATGAGTATCTCTG 59 56137021 56137042 AGATGGAGAGTTTATTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056829 ENSRNOT00000078339 2 1 1 61 17 1725274 1725292 CGAGGTGCAGTTATTGCTG 59 1725231 1725250 TATTGCAAGTCATGATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054088.1 ENSRNOG00000059597 ENSRNOT00000088315 3 1 1 108 3 139735319 139735342 GAGAAGAGAATCTAAACAGGCG 59 139735154 139735172 CCAGCTCTCATTCCCTCTG 60 Novel Rattus norvegicus 81 AABR07007744.1 ENSRNOG00000045746 ENSRNOT00000074326 1 1 1 80 2 26812886 26812908 AGATTTCACCTCACATGCG 58 26812824 26812843 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07007744.1 ENSRNOG00000045746 ENSRNOT00000074326 2 1 1 80 2 26812886 26812909 GAGATTTCACCTCACATGCG 59 26812825 26812844 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051422 ENSRNOT00000089618 1 1 1 61 9 32739971 32739992 ATCCAGGAATATTATGTGGCAG 58 32740009 32740032 TAAGTCAGAACCTTGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067080.1 ENSRNOG00000057659 ENSRNOT00000085416 2 1 1 97 9 29571897 29571919 GGATATTGTGGATAACTGTGCC 59 29571821 29571839 TACACTCTTCGGAAGTGGC 59 Novel Rattus norvegicus 81 AABR07068711.1 ENSRNOG00000048020 ENSRNOT00000054648 2 1 1 60 9 116192196 116192214 AGGGCTACAATAGGTGTGC 60 116192237 116192256 AGAGTGAGGCACTCAAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053870 ENSRNOT00000091353 1 1 1 69 7 107447956 107447977 GATATGTCCTCTATCCAAGGAC 57 107447908 107447926 GCAGACTCCTATTCCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063703.1 ENSRNOG00000046279 ENSRNOT00000075437 3 1 1 60 6 42777947 42777966 CGATTACCACGGTGTTTGAC 60 42777987 42778007 GCATCTACTTCCTTAGTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041735 ENSRNOT00000063488 1 1 1 60 7 14118509 14118527 CCTCAGAAGCTAAGCAAGG 58 14118467 14118486 CAGTATTCCTAGGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041735 ENSRNOT00000063488 2 1 1 60 7 14118527 14118545 GAGTGTGCCTCACTTTGTC 59 14118485 14118505 CATCCAAGTACTAAGCAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055283 ENSRNOT00000080135 3 1 1 60 12 43916883 43916901 ACATCAGTAGGTGGCAGAG 59 43916841 43916863 CTAATCAGATGTTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061666 ENSRNOT00000083832 3 1 1 60 9 41373996 41374017 AGTACCATGATCATGATCATGG 58 41374037 41374056 ACATCCGGAGTACAATGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029023.1 ENSRNOG00000059756 ENSRNOT00000084112 2 1 1 80 10 2992424 2992447 GAGATTTCACCTCACATGCG 59 2992489 2992508 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC141966.1 ENSRNOG00000021435 ENSRNOT00000029099 1 1 1 60 9 98601404 98601424 GAAAGAGATGCAACTTACCCG 59 98601364 98601384 AAATACAGGAGAGTGAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058930.1 ENSRNOG00000056692 ENSRNOT00000079014 2 1 1 85 7 144368212 144368231 TTCATGACACCTTCATGCCT 60 144368142 144368164 CAAGGTTGTACTGCTGCAG 59 Novel Rattus norvegicus 81 AC117096.1 ENSRNOG00000057089 ENSRNOT00000089714 1 1 1 80 2 264755951 264755971 GCACAAATTGTCCACAAACAC 60 264753432 264755912 CAAAGGTCTCTGGAAATATGCA 59 Novel Rattus norvegicus 81 AC124874.3 ENSRNOG00000058855 ENSRNOT00000044263 2 1 1 69 13 82267413 82267431 TCTTTCTCCACATCCTCGC 60 82267360 82267378 CTCACACCAGTCAGAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067246.1 ENSRNOG00000047336 ENSRNOT00000075132 1 1 1 113 9 36475226 36475246 TGGACCAGAGAAACACCTC 59 36475131 36475155 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 AABR07054167.1 ENSRNOG00000058400 ENSRNOT00000088666 2 1 1 80 3 143645290 143646073 TCCTATTACATAAAGCGGACTCC 60 143645232 143645250 TAGGAGCTTCCTGCATCTG 59 Novel Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 2 2 2 80 10 89185622 89185641 AAAGTGAAGATGCCAGAGGT 59 89185682 89185781 ATCCTGGATAGTGAACCTCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044087 ENSRNOT00000069354 3 1 1 60 3 55740495 55740516 CATATCATCCTGAACATCCCTG 59 55740535 55740555 AACAAGGTTCTCCTGATCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058998 ENSRNOT00000084716 2 1 1 60 8 1160622 1160641 CAATGAGGTTTATCCGAGGC 59 1160581 1160599 TCACATCATGGTTCCAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061914 ENSRNOT00000087774 1 1 1 65 13 51327781 51327799 ATCAGACCTTGCTGCTGAG 60 51327828 51327846 TACATCACTGTGAGGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011956.1 ENSRNOG00000060006 ENSRNOT00000091605 1 1 1 122 2 177829219 177829239 ACCAAACAAGTGAAGGAACTG 59 177829323 177829342 TGACTCCTGTCTCTTCCCT 59 Novel Rattus norvegicus 81 AC125991.1 ENSRNOG00000043148 ENSRNOT00000067216 3 1 1 80 3 78934952 78934971 GTTCTCATCTTTCCTTTGCC 57 78935014 78935033 GTAGGAAGCAAGAGGAAGC 58 Novel Rattus norvegicus 81 AABR07054547.1 ENSRNOG00000008136 ENSRNOT00000010732 2 1 1 95 3 159452573 159452598 TGTCACCCAATGTTCTTAAGAG 58 159452499 159452517 GATCTTCTGGGCATTGGTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058817 ENSRNOT00000090144 1 1 1 60 8 115337970 115337991 AGAAGATAGCTTTCCTCCACAG 60 115338006 115338030 GTGTGGATGTTTATAGACTCTTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058817 ENSRNOT00000090144 3 1 1 60 8 115338006 115338030 GTCAAGAGTCTATAAACATCCACAC 60 115338048 115338066 GTTGACTTTGGGAGCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007905.1 ENSRNOG00000053229 ENSRNOT00000079385 1 1 1 60 2 34452824 34452844 ACTGAACTGAGAATAGGACCC 59 34444925 34444944 TTCTTCTACATGTTGCCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC113635.3 ENSRNOG00000061289 ENSRNOT00000086836 1 1 1 80 2 209849994 209850015 GGATCAAAGGGAATTGAGATCC 59 209850055 209850090 GATTAGGTTACGGCCAACAG 59 Novel Rattus norvegicus 81 AC114017.2 ENSRNOG00000061210 ENSRNOT00000078747 1 1 1 80 10 38827093 38827114 ATTTAGTCAACAAGGCTTGGG 59 38827033 38827052 TCTGTCGGAAAGAAATTCGG 58 Novel Rattus norvegicus 81 AABR07070603.1 ENSRNOG00000057772 ENSRNOT00000085213 1 1 1 60 8 76677305 76677323 TATCTGGCACTGTGGTTCC 59 76677347 76677365 TGGTATTGTAGGACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000061656 ENSRNOT00000090754 2 1 1 60 8 44992059 44992077 CGCTGTGATGATGGATTCC 59 44992099 44992119 CTAGCCAACACAGTACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024735.1 ENSRNOG00000058290 ENSRNOT00000077388 2 1 1 97 16 13050724 13050742 CACCTTCTATGTCCCTGCC 60 13050802 13051283 TATCACTTGGACCAAGCCTC 60 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471 1 1 3 105 20 4873104 4873334 CACAATGAATGGGCTTTGC 58 4871893 4871911 TAGCCCACATCTAGGTGAG 58 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000081704 3 1 3 102 20 4873104 4873334 CACAATGAATGGGCTTTGC 58 4873020 4873038 AGTAAGGGAGCAGAAACCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060576 ENSRNOT00000091673 2 1 1 60 8 105317913 105317932 ATATGTGCGTCAGTAGGTGG 60 105317872 105317891 CAGATCAGAACAGAGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000060429 ENSRNOT00000026540 1 1 1 80 1 65600280 65600300 GGGATAGACAGATCTACCCAG 59 65599944 65600239 GCTTGGAGATACCATCTCCT 59 Novel Rattus norvegicus 81 Rn60_20_0049.10 ENSRNOG00000058987 ENSRNOT00000082491 2 1 1 90 20 4900274 4900792 TCCATCTTCAACAGGTGCA 59 4900202 4900220 CCAGGTTGAGTTCCCTCAG 60 Novel Rattus norvegicus 81 AABR07071661.1 ENSRNOG00000053820 ENSRNOT00000089732 3 1 1 81 8 126347040 126347058 AAGCGTACCGACTCTACAG 59 126342377 126346995 CCTCTTCTGGTTCTGTCCC 59 Novel Rattus norvegicus 81 AABR07067759.1 ENSRNOG00000057866 ENSRNOT00000084904 3 1 1 141 9 61655963 61655981 ATCATCTTTGTGAAGCCGG 58 61655839 61655857 GACTTAGTGGGAAGAGGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004269.3 ENSRNOG00000058004 ENSRNOT00000083062 3 1 1 227 1 135084242 135084260 CATACCAGATCCCAGCTGG 60 135084032 135084050 CCTCCTAGGTGTAAGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052284 ENSRNOT00000087562 3 1 1 60 8 73362420 73362440 ACGATACAGAGAAGGTTAGCA 59 73362380 73362399 ATGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060736 ENSRNOT00000083997 1 1 1 60 8 13778525 13778547 GGGAAATACTGTGATCATGAAGG 59 13778487 13778507 CCAGAGCGTCATAGATAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052988 ENSRNOT00000092206 1 1 1 60 8 95657794 95657812 GTGTCAGTAGGTGGCAGAG 60 95657752 95657771 GTTCGTAGATCAGAACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073400.1 ENSRNOG00000059084 ENSRNOT00000088997 1 1 1 83 8 50539066 50539279 ACAGACAGGTTCTTCTCCA 58 50539001 50539019 GATGGAGAAGTTCAGGCAG 58 Novel Rattus norvegicus 81 SNORA43 ENSRNOG00000059581 ENSRNOT00000090357 1 1 1 64 8 118196837 118196855 GCTCTGTCTATGACACTGG 57 118196791 118196809 CTGGCTTCTGAAAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058872 ENSRNOT00000081507 2 1 1 102 8 85366253 85366271 ATGAGGTTTATCTGAGGCG 57 85366334 85366355 AGAGACAAAGTAGTGAGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052126 ENSRNOT00000088994 1 1 1 60 8 83860139 83860159 GGTCACATGGACATCAATAGG 59 83860099 83860119 TCAGAATGCTAAGCATAGACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096430.1 ENSRNOG00000050327 ENSRNOT00000072344 3 1 1 61 8 82512066 82512084 TGGCCTTGAACTCAGATCC 59 82512023 82512041 GGCACATGCCTGTAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132740.1 ENSRNOG00000054780 ENSRNOT00000084038 2 1 1 60 8 77978701 77978720 CTATGAAGGCCAGAAGATCC 58 77978660 77978680 TGGCATTTGTGTTCTCTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107446.3 ENSRNOG00000058163 ENSRNOT00000073343 3 1 1 62 3 57697536 57697556 CTACAAAGCTTCTGTAAGGCA 58 57697582 57697600 TTCCCAATCTGTTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053596.1 ENSRNOG00000050029 ENSRNOT00000071456 2 1 1 60 3 115621511 115621529 GAGTAGGCCCTTATGAGGT 58 115621552 115621571 GCATGGATAAAGCCACTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000059297 ENSRNOT00000086728 2 1 1 60 16 39146346 39146366 TACACAACTTCCCAAATCCAG 58 39146388 39146406 ATCACTCCATTTCCACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026233.2 ENSRNOG00000055604 ENSRNOT00000081838 3 1 1 60 16 68635161 68635182 ATCCATCACTGACAATCTTCTC 58 68635200 68635221 GTAGAGCCATATTTGAATGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014745.1 ENSRNOG00000060277 ENSRNOT00000089286 1 1 1 80 14 29645519 29650844 CTCAAGAAACGACAAGGTGG 59 29645458 29645478 GAAAGAGGATGTGCAGTTTCC 60 Novel Rattus norvegicus 81 AABR07014855.1 ENSRNOG00000054855 ENSRNOT00000079827 3 1 1 60 14 33960625 33960643 CAAAGGAACTCTTGCCCTG 59 33960583 33960601 TTGTCAGGCTGTTTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC116236.2 ENSRNOG00000059729 ENSRNOT00000089937 3 1 1 86 14 34329140 34329515 CAGTCTCTGAATGGGTCCAG 60 34329558 34329582 GTAGGAATTCAACATAGATCCACTG 60 Novel Rattus norvegicus 81 AABR07031285.1 ENSRNOG00000052609 ENSRNOT00000087554 1 1 1 88 18 7335070 7335089 TGCTCTTGATGATGGAACAG 58 7335137 7343946 TTCTAAACACTCATGGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07046779.1 ENSRNOG00000058268 ENSRNOT00000077796 1 1 1 80 5 6404509 6422772 AATTCAGGTCTCAGGGTTGG 60 6422811 6422833 TTACTGGAGACTTCTAGCATAGG 59 Novel Rattus norvegicus 81 AABR07072400.2 ENSRNOG00000061611 ENSRNOT00000089173 2 1 1 80 14 43647779 43647798 AGGACATGAACTAGCCACAG 60 43646629 43647739 TACACAGTACACTCATCTCAGG 59 Novel Rattus norvegicus 81 AABR07072400.2 ENSRNOG00000061611 ENSRNOT00000089173 3 1 1 80 14 43646640 43647751 CATTTGGTCATTCCTGAGATGAG 60 43646582 43646603 CCAACCAAGAGAAGATCTTCAG 59 Novel Rattus norvegicus 81 AABR07000173.1 ENSRNOG00000059137 ENSRNOT00000082859 1 1 1 80 1 2762086 2762104 GTTCCGAGCCGAAATTCTG 59 2751376 2762044 TTCTGGGAGATTCTTCATCCT 58 Novel Rattus norvegicus 81 AABR07047044.2 ENSRNOG00000060636 ENSRNOT00000090029 3 1 1 83 5 17064766 17064786 CCATTAAACACCACGAGAGTC 59 17063418 17064721 AGCCTTGGACCTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 1 1 1 75 5 17113874 17123496 TACATCGCAGTGACAAGTG 58 17113817 17113835 CAATACTTGGCACACCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015517.1 ENSRNOG00000058054 ENSRNOT00000088045 1 1 1 80 14 61298794 61298812 GAAACAGAGTCACTGCAGC 59 61298855 61299418 CAAGAGTACCACCATGATGC 59 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 1 1 1 77 1 12403150 12403168 TACATGGCACTCCTGATCG 59 12403209 12409367 GTCTGATCACCGAAGTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07047212.2 ENSRNOG00000061754 ENSRNOT00000077918 3 1 1 80 5 24223105 24225343 CAGCAATTAATCAGATGCGTC 58 24223045 24223064 TACAGTGTCTGCTACTGTCC 59 Novel Rattus norvegicus 81 AABR07000452.1 ENSRNOG00000052189 ENSRNOT00000081716 2 1 2 83 1 13371440 13371458 AAGTGGAGAGTTTCCACAC 57 13370278 13371395 CTCTTTCTTGAAAGAGCTGTC 57 Novel Rattus norvegicus 81 AABR07061022.1 ENSRNOG00000053033 ENSRNOT00000083892 3 1 1 61 4 102804958 102804977 GTTTATTGGGTTCTTGTGGC 58 102805112 102805130 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 2 1 1 60 10 66652860 66654440 GAATTTCAGAACATCCGGTGG 60 66652820 66652838 TAATCAGGTAGCATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC096263.1 ENSRNOG00000055694 ENSRNOT00000085732 2 1 1 82 10 71852048 71852066 CGTTCTCCACTTCCAACTG 59 71852111 71858973 CAATGCCATCTCAGATTCCC 59 Novel Rattus norvegicus 81 AABR07030351.1 ENSRNOG00000054174 ENSRNOT00000085242 3 1 1 83 10 82338507 82341074 AGAAACTCTACCTTGTCCCA 58 82341120 82341138 GGGAATTGAACTGGAGTCC 58 Novel Rattus norvegicus 81 AABR07048321.1 ENSRNOG00000057406 ENSRNOT00000081275 3 1 1 82 5 72892381 72892399 TCCATTTCAGACTCCTGGG 59 72892445 72929271 ATAAGGTCCCAGGACATCG 59 Novel Rattus norvegicus 81 AC095278.2 ENSRNOG00000061008 ENSRNOT00000089654 3 1 1 94 10 89496883 89496901 AGACTAGACTCTCGGGAGC 60 89496390 89496825 AACATTCGTGAGACCAGGG 60 Novel Rattus norvegicus 81 AABR07030501.1 ENSRNOG00000055811 ENSRNOT00000078597 2 1 1 92 10 90771263 90771985 TTTGTCTGCCCTTCCTCTC 59 90771189 90771208 TATTAGCTTCCAGCAACAGC 58 Novel Rattus norvegicus 81 AABR07016556.3 ENSRNOG00000058894 ENSRNOT00000083639 2 1 1 60 14 103457601 103457621 CAACGTCCCAATGTTCATCTC 60 103457308 103457329 GTGTTCTTTGTCTGACAAAGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061408.1 ENSRNOG00000055287 ENSRNOT00000081184 1 1 1 80 4 122050803 122050824 ATTGAAGCCTTTACAGTTGCTC 60 122048657 122050764 TGATCAGTTCTTTCCCTGGAG 60 Novel Rattus norvegicus 81 AABR07061408.1 ENSRNOG00000055287 ENSRNOT00000081184 2 1 1 80 4 122050805 122050826 CAATTGAAGCCTTTACAGTTGC 59 122048659 122050765 ATCAGTTCTTTCCCTGGAGC 60 Novel Rattus norvegicus 81 AABR07016592.1 ENSRNOG00000061602 ENSRNOT00000085828 2 1 1 80 14 105914837 105914855 CGTGAGATCTCGTTACCGA 59 105914896 105916806 TCAGAATATTCATCTGCACTGC 59 Novel Rattus norvegicus 81 AABR07030568.1 ENSRNOG00000051841 ENSRNOT00000082370 2 1 1 80 10 93242356 93242374 CTCCTTGTCAAATGCAGCC 60 93251185 93251204 CCTACGGTTTCCAGATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001001.1 ENSRNOG00000060926 ENSRNOT00000086351 3 1 1 85 1 31937685 31938902 CAGTATCCCTCCAGTAGCA 58 31938951 31938969 GTTGGTTCTTGGCTCTCAG 59 Novel Rattus norvegicus 81 AABR07049033.1 ENSRNOG00000055709 ENSRNOT00000089350 1 1 1 80 5 100777499 100812140 AAGGGTCCATAAGCTCATCAG 60 100812181 100812200 GTGTCTTCTTCACGCATCAG 59 Novel Rattus norvegicus 81 AABR07061899.1 ENSRNOG00000052822 ENSRNOT00000078796 3 1 1 64 4 151887088 151887107 AATTCCTTACAGTGCCACTC 58 151887043 151887067 GTCTAACAATGAAAGTCTATGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061902.2 ENSRNOG00000054613 ENSRNOT00000081622 1 1 1 73 4 151985851 151985869 GAGTGCCTTCGGTCTACAG 60 151982217 151982237 CCAACCATTCTGGATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000086379 3 1 2 82 10 99706395 99706413 ATCTGTGAACACAAGGCCT 59 99691229 99706352 CTGGAAATACCTTGCAGATGTG 60 Novel Rattus norvegicus 81 AABR07001018.5 ENSRNOG00000058487 ENSRNOT00000082414 2 1 1 82 1 33717913 33720647 TCTTGATGATGGAGAGTAAGGG 59 33717852 33717870 CTGGATACGCTGACCTAGG 59 Novel Rattus norvegicus 81 AABR07030706.2 ENSRNOG00000059380 ENSRNOT00000082818 3 1 1 92 10 100912505 100913757 TTATCCGAGTCCTCACAGG 58 100912431 100912450 GATGGTTTGAGGGCTAACAG 59 Novel Rattus norvegicus 81 AABR07001068.1 ENSRNOG00000058077 ENSRNOT00000081636 3 1 1 80 1 37059739 37059758 GATATGTCTGGTTGCCATGG 59 37059800 37162358 AGGAAGAATGACACCTGGTC 60 Novel Rattus norvegicus 81 AABR07017506.1 ENSRNOG00000052920 ENSRNOT00000084371 2 1 1 81 15 24379139 24379157 ATTTCACCTCCCAGTTTCC 57 24379202 24379408 GAGATCATCAAGCCCTCTG 57 Novel Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000080624 3 1 2 84 1 42230077 42230096 CAGCTAGTCCACCTTGAGAG 60 42230137 42232798 CTTTCTGAGTCTTTAGCTTTCTCTG 60 Novel Rattus norvegicus 81 AABR07033249.1 ENSRNOG00000055160 ENSRNOT00000089916 2 1 1 85 11 13072755 13108242 AAAGAAAGCACTTTGGAGTCAG 60 13108286 13108306 CTGCTTCATCGTGAGAAAGTC 59 Novel Rattus norvegicus 81 AABR07031533.2 ENSRNOG00000052914 ENSRNOT00000084983 2 1 1 84 18 18301454 18301476 GGAGAACTAACTGGATACCTGAG 60 18292170 18301415 GGATGCAAGGTAAAGTATCTATGC 60 Novel Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 2 1 1 69 1 45409405 45409526 GTAATAGAAGACCCGGTTTATGTG 59 45409359 45409377 TTTCGGTCCTCACGATCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 1 1 1 62 18 21111550 21111568 TTTGGTGGAACTGTGACAG 58 21111591 21113414 CTCTAAGTCATTTGTTTCACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001477.1 ENSRNOG00000058103 ENSRNOT00000086348 3 1 1 96 1 46741849 46744050 GGATACAAAGGGTTAAAGGAAGG 59 46741775 46741793 ACATTGTTGCATGCTAGCC 59 Novel Rattus norvegicus 81 AABR07062539.4 ENSRNOG00000057468 ENSRNOT00000086445 3 1 1 80 4 181686280 181686299 AAGAAACTGGCCTTTGATGG 59 181686144 181686168 CCTGTGTCCTTGTTAATATCTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 2 1 1 63 4 182329579 182329599 GAGATAGAGAAGTGGGAAGGA 58 182329624 182330270 TTGCCTTCTGTCTTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072580.1 ENSRNOG00000058600 ENSRNOT00000078778 3 1 1 76 18 27911226 27911247 GTTCTAACAGGATACCATTGCT 58 27903691 27903709 TTTCTCCCAGATCCTCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049804.1 ENSRNOG00000059592 ENSRNOT00000085217 1 1 1 80 5 138911880 138911898 AAATGTTCGCCTAGCTTGG 59 138909878 138911837 TCAGATTGAAGCAGGGACTC 60 Novel Rattus norvegicus 81 AC125248.1 ENSRNOG00000060829 ENSRNOT00000080979 2 1 1 82 18 29535541 29535560 GTTCAGAGTGATTCCCTAGC 58 29535605 29539024 GGAACCCAGTAGCAATGTG 59 Novel Rattus norvegicus 81 AC125248.1 ENSRNOG00000060829 ENSRNOT00000080979 3 1 1 83 18 29535601 29539020 CCTTCACATTGCTACTGGG 58 29539067 29539085 TTCTTGACAGTCACGTTGC 59 Novel Rattus norvegicus 81 AABR07063152.1 ENSRNOG00000053643 ENSRNOT00000089442 3 1 1 111 6 19299785 19299804 AGTTCAGAATGGAGCAACTG 58 19299876 19300733 AGCCTTATATCATTTGCCCTG 58 Novel Rattus norvegicus 81 AABR07063250.2 ENSRNOG00000061045 ENSRNOT00000087766 3 1 1 98 6 24260043 24260061 GACTCTGGAATGCACATCG 59 24264389 24264408 CTGATGTGGCAGTTTCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001619.1 ENSRNOG00000053004 ENSRNOT00000088831 2 1 1 107 1 54297908 54300404 CTACCTGGAAAGTTCATCCAC 59 54300473 54300491 TCAGTGTCCACTAGCACAG 59 Novel Rattus norvegicus 81 AABR07049961.1 ENSRNOG00000052753 ENSRNOT00000082281 3 1 1 81 5 146319731 146320629 TCATCTAAGCCTCAGGTGAG 59 146320671 146320691 TGCTATCATTTGTCTTCAGCC 59 Novel Rattus norvegicus 81 AABR07063507.1 ENSRNOG00000052716 ENSRNOT00000082944 1 1 1 60 6 32307335 32307970 TATCTGAAGGGTCTTACACTGC 60 32307296 32307316 CCTCCTTCAGTACCAATATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018100.1 ENSRNOG00000052751 ENSRNOT00000085733 2 1 1 86 15 39587381 39587953 AAATGTTGGCAGACTGGTG 59 39588003 39588021 CTATGTCTGCAGTGGTCCT 59 Novel Rattus norvegicus 81 AABR07063515.1 ENSRNOG00000051747 ENSRNOT00000083712 2 1 1 80 6 32959377 32959398 AAGATTTCATCTCAAGGCAGGA 60 32959000 32959336 AGACCTGTCAGGAATCTGC 59 Novel Rattus norvegicus 81 AABR07063515.1 ENSRNOG00000051747 ENSRNOT00000083712 3 1 1 80 6 32959377 32959397 AGATTTCATCTCAAGGCAGGA 59 32958999 32959336 TAGACCTGTCAGGAATCTGC 59 Novel Rattus norvegicus 81 AABR07063553.1 ENSRNOG00000055840 ENSRNOT00000078414 2 1 1 80 6 35091860 35096301 ATCTAGTCCAAGATGTGAAAGC 58 35096342 35096360 AGAAAGCGAAGGAAGAACG 58 Novel Rattus norvegicus 81 AABR07001780.1 ENSRNOG00000056729 ENSRNOT00000087541 2 1 1 89 1 57667191 57667210 AGCTAATATCGCCTCCTTGG 60 57667262 57667376 TCTTGGGTTTCCAGCTCTG 60 Novel Rattus norvegicus 81 AC111678.1 ENSRNOG00000055327 ENSRNOT00000079007 1 1 1 89 18 52053246 52053267 CTTACTGGCAGTGAAATTACAG 58 52053317 52125303 CGATACAGAAGCTTCCGTC 58 Novel Rattus norvegicus 81 AC111678.1 ENSRNOG00000055327 ENSRNOT00000079007 2 1 1 92 18 52053244 52053267 CTCTTACTGGCAGTGAAATTACAG 60 52053317 52125304 TCGATACAGAAGCTTCCGTC 60 Novel Rattus norvegicus 81 AC107505.2 ENSRNOG00000056691 ENSRNOT00000077835 3 1 1 80 18 53430404 53431331 TTAAACCATCCTACTGGTCCC 59 53430344 53430362 CATTTGCCATGACCTGCAG 60 Novel Rattus norvegicus 81 AABR07063654.2 ENSRNOG00000056738 ENSRNOT00000078812 3 1 1 65 6 39982734 39982752 TTGCCAGCCCAATATTCTC 58 39981946 39981965 TTTGAGAGGATGACTCTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018438.1 ENSRNOG00000054138 ENSRNOT00000089311 2 1 1 60 15 57860574 57860594 CAGGTCTTCATGTTTGACCAC 60 57860750 57860768 GCTTTCTGTTTCACTGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018447.1 ENSRNOG00000057931 ENSRNOT00000090053 1 1 1 91 15 58308021 58308039 ACACTTCTTGGGAGAGCAG 59 58307769 58307966 TACCTCTTCCCAAGAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032409.1 ENSRNOG00000057481 ENSRNOT00000082835 1 1 1 81 18 64327177 64327198 CTCAGTTGCTTCTTCAATATGG 58 64327238 64333577 GAAGAATGTTCCTGCAAACAG 58 Novel Rattus norvegicus 81 AABR07002627.1 ENSRNOG00000060587 ENSRNOT00000080668 2 1 1 142 1 78112685 78147919 GAGAATGGGTTACAGGCGT 60 78148022 78148043 CTCTTACCAAACCATTTCTCCC 59 Novel Rattus norvegicus 81 AABR07050652.1 ENSRNOG00000057101 ENSRNOT00000091594 2 1 1 80 5 172775754 172775774 TAGTGTGCTGTCAATTCTCAG 58 172774182 172775714 CCCAAACACAGATTCCTACAG 59 Novel Rattus norvegicus 81 AABR07063767.1 ENSRNOG00000056240 ENSRNOT00000082225 3 1 1 82 6 46950310 46958586 AGGAGGAAGAGGAAACTGC 59 46950246 46950266 TGGTAAAGCTTTGAGTTCCTC 58 Novel Rattus norvegicus 81 AABR07072841.1 ENSRNOG00000052706 ENSRNOT00000078087 1 1 1 95 3 3574881 3574899 GTTTAAAGGGACAGAGCGC 59 3584052 3584070 AATCAGTGAGCATCTGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.1 ENSRNOG00000053639 ENSRNOT00000081148 3 1 1 81 18 71988616 71991060 TGGAATGTGGCTTAAGAATCC 58 71988555 71988574 TTTAAGATGGCGCCATACAG 59 Novel Rattus norvegicus 81 AABR07002845.1 ENSRNOG00000055006 ENSRNOT00000080451 3 1 1 108 1 86803121 86803577 CCTGGAAAGTTCATCCACAG 59 86803032 86803050 CTCCTCAGTGTCCACTAGC 59 Novel Rattus norvegicus 81 AABR07032724.1 ENSRNOG00000053886 ENSRNOT00000077887 1 1 1 100 18 78289057 78289075 GATAGGAAGCAGTGGTGTG 58 78288535 78288553 TCCAAGGCCTGTGTTACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019253.1 ENSRNOG00000057939 ENSRNOT00000080408 1 1 1 60 15 96608602 96608883 AGCCTACTTCTTTAGGCCA 58 96608560 96608581 CATAAATCCCAGTTGCATAGAG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07019254.1 ENSRNOG00000052453 ENSRNOT00000089312 3 1 1 106 15 96779982 96789139 TGGTTTATGAAAGCAATCGC 58 96779895 96779913 GTCAAGTTCAGTGTTGGGA 58 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000080938 2 1 2 81 15 98620284 98620302 CAGAGTTGTGCTGGATCAG 58 98620341 98620472 GGGATTCCTTTACCTTACTTTACTC 59 Novel Rattus norvegicus 81 AABR07003001.1 ENSRNOG00000052011 ENSRNOT00000092128 3 1 1 81 1 92233726 92238146 CTCCCTTTGAGTGTATTAGGAC 58 92238188 92238206 AACAGACTGTTTCAGGTCC 57 Novel Rattus norvegicus 81 AABR07032759.1 ENSRNOG00000053053 ENSRNOT00000078489 2 1 1 60 18 80294293 80294312 CCTTCTCTTACTTGGCTCCT 59 80294335 80300851 TCAGAGGGTAGAAGTCCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07003001.2 ENSRNOG00000059068 ENSRNOT00000084767 2 1 1 80 1 92334407 92334426 GACGCCTCAGATTCATAAGG 58 92334467 92335266 GTGTTACAGCCCTGATATGAC 59 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 1 1 1 78 15 103583562 103583580 ATGTTGGACATACTCGGCT 59 103576118 103583520 ATACCTGTTTGATGCAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032806.1 ENSRNOG00000052865 ENSRNOT00000089224 2 1 1 80 18 82756738 82784798 CATAAGATACAGGAGTTGCTGC 59 82756679 82756697 AACTAGCCGTGTAGAGCTG 59 Novel Rattus norvegicus 81 AABR07019437.6 ENSRNOG00000060490 ENSRNOT00000091703 2 1 1 81 15 105499752 105499770 CTTGGGAGCTAAACCAACC 59 105499813 105500935 TACTAAGGGAGACCTGTAGGT 59 Novel Rattus norvegicus 81 AABR07051592.1 ENSRNOG00000052953 ENSRNOT00000081264 1 1 1 80 3 17648872 17649008 TGCTGTGGATAACAGATGG 57 17649052 17649070 CAGTTTCTCCCAGAGATGC 58 Novel Rattus norvegicus 81 AABR07003030.2 ENSRNOG00000055070 ENSRNOT00000092132 3 1 2 90 1 94028392 94093219 TTTAAGACTTGCCTGGGAG 57 94028320 94028341 CAGTCTAGTAAGAATGTGTCCT 57 Novel Rattus norvegicus 81 AABR07051592.2 ENSRNOG00000054125 ENSRNOT00000089977 3 1 1 80 3 17667332 17667471 TGCTGTGGATAACAGATGG 57 17667514 17667533 TAGTTTCTCCCAGAGATGCA 58 Novel Rattus norvegicus 81 AABR07064727.1 ENSRNOG00000060584 ENSRNOT00000080093 2 1 1 80 6 91803709 91803728 CCATTGGCTGGTTAACACTG 60 91803767 91803912 TCTCTGGTAGATTTAAACCCTGG 60 Novel Rattus norvegicus 81 AABR07003040.1 ENSRNOG00000055333 ENSRNOT00000079642 1 1 1 60 1 94454023 94454041 CCTGGAGAATGGTCATCGA 59 94451369 94451388 TAGAGGATGCTGCCATTAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051639.1 ENSRNOG00000058342 ENSRNOT00000078895 2 1 1 80 3 18562212 18562357 GGATTACAGATGCCATATGTGAC 60 18562397 18562415 TGGAGACAGTTTCTCCCAG 59 Novel Rattus norvegicus 81 AABR07033271.1 ENSRNOG00000052428 ENSRNOT00000089620 3 1 1 80 11 14545617 14545636 TAGAGCTTTCACTGGGAAGC 60 14545676 14576111 CATAACACAGTAGCCTTTCGTC 60 Novel Rattus norvegicus 81 AABR07019449.1 ENSRNOG00000059711 ENSRNOT00000086500 1 1 1 95 15 106195364 106195382 AGGAGTTTGGTCAGGTTCG 60 106155555 106195305 CTGAGGTGTAGCTTCCCTC 59 Novel Rattus norvegicus 81 AABR07071904.1 ENSRNOG00000052237 ENSRNOT00000077787 1 1 1 80 1 94836400 94836419 ACCACAAAGGACATTTGTGG 59 94836460 94837410 CCTTCAGGTCTGCTTTAACAC 59 Novel Rattus norvegicus 81 AABR07033283.1 ENSRNOG00000059856 ENSRNOT00000085016 2 1 1 80 11 15377894 15377912 AAGCTAAACACTCTGGACG 58 15375947 15375965 CATAACGGTGTTCGAACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033292.1 ENSRNOG00000060259 ENSRNOT00000079502 1 1 1 66 11 16276013 16276031 CATTTGGTTGCTGATGGCA 59 16274834 16274853 CAGCTCTGAGATTACAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003056.1 ENSRNOG00000055248 ENSRNOT00000088377 2 1 1 81 1 95430462 95430481 GGTGATCTTCAAGTTGGAGC 59 95430522 95432568 TTTATGAATACCTGGAAGGCTG 58 Novel Rattus norvegicus 81 AABR07064918.1 ENSRNOG00000053526 ENSRNOT00000087533 3 1 1 81 6 100671200 100673886 ATTGAACAATGCAGGGACTC 59 100671138 100671157 TACTTCAGCCCTGGATTCTC 59 Novel Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 3 1 1 89 3 22636574 22637558 ACACGCAGGGATGTTACTC 60 22636503 22636523 CCAAAGGCTGTAGAAATCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020744.1 ENSRNOG00000060402 ENSRNOT00000087283 1 1 1 80 13 38191284 38206386 GTCTCAGAAAGACAGAACCC 58 38191223 38191244 GACCTTTAGTTTCAACTAGCAG 57 Novel Rattus norvegicus 81 AABR07020859.1 ENSRNOG00000056388 ENSRNOT00000089001 3 1 1 81 13 43748993 43749012 TCTGGTAAGACATGAGAAGC 57 43749053 43773098 CAGCTTCTCCCTTACTATTCTC 58 Novel Rattus norvegicus 81 AABR07051982.2 ENSRNOG00000060164 ENSRNOT00000078770 2 1 1 142 3 30894416 30894436 ACTCCCAATCTTAGAAGAGGT 58 30892835 30892853 CAACCTGGAAGGACTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020966.1 ENSRNOG00000051872 ENSRNOT00000086053 2 1 1 76 13 48979267 48979285 TACATCAGGTTCCTGGCTC 59 48979933 48979951 CTTAGGAGACCGGATTTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07003349.1 ENSRNOG00000055821 ENSRNOT00000086165 3 1 1 65 1 106862817 106862835 TCAAACAACAGTCCCTGGG 60 106861356 106862789 TCAGCTCCCTTGTAAATGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033730.1 ENSRNOG00000055423 ENSRNOT00000083023 2 1 1 131 11 37726100 37726118 TTGGGAAGTAGAGGCATGG 59 37711544 37726005 CTGGTTGTTTCCCATCCAC 59 Novel Rattus norvegicus 81 AABR07033836.1 ENSRNOG00000060455 ENSRNOT00000086172 2 1 1 111 11 39710272 39756284 GATGATGAAGGCGAATGCTG 60 39756358 39756376 AAAGGACAGTCCTGAGGTG 59 Novel Rattus norvegicus 81 AABR07021355.2 ENSRNOG00000060838 ENSRNOT00000088350 1 1 1 80 13 67483717 67483736 GTACTCAGAATGGCAATCCT 57 67483779 67516973 TTCTGAGATTCCTGCTCCA 58 Novel Rattus norvegicus 81 AABR07021357.1 ENSRNOG00000054544 ENSRNOT00000083880 3 1 1 139 13 67695063 67695083 ACCCTGACTCTGATGAAATCC 60 67695184 67749218 GATTGCCACATGTCTGTCG 59 Novel Rattus norvegicus 81 AABR07033921.1 ENSRNOG00000059392 ENSRNOT00000078626 3 1 1 102 11 44490006 44501278 AATCTCTTGAGACGTCCGTC 60 44501342 44501361 CTCAGAATGGCTACGGAGAG 60 Novel Rattus norvegicus 81 AABR07065298.1 ENSRNOG00000059025 ENSRNOT00000087577 3 1 1 60 6 120103235 120103255 CAGTAAACTGCTCAGTTCTGC 60 120085230 120085248 GCACTGTGAAGTTGTAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021411.1 ENSRNOG00000052592 ENSRNOT00000090948 1 1 1 107 13 70832331 70832351 GGTGGTATGTATCAGACACTG 58 70830892 70832263 GTCTGGAGAACCATCATCTG 58 Novel Rattus norvegicus 81 AABR07065348.1 ENSRNOG00000054396 ENSRNOT00000092058 1 1 1 80 6 123108512 123108533 GCAGTAACCATGACGTTTAGAG 60 123108570 123109603 GTCGTCTTCATATGACATCTTGG 59 Novel Rattus norvegicus 81 AABR07021492.1 ENSRNOG00000056431 ENSRNOT00000089000 2 1 1 80 13 74612234 74616792 CACAAATACAGGTGAGCTACTC 59 74612175 74612193 TGTTCTCGTGGTATCCCTG 59 Novel Rattus norvegicus 81 AABR07021494.1 ENSRNOG00000051559 ENSRNOT00000089910 3 1 1 80 13 74763271 74764016 CAGCATCAGAATCAGAGCA 58 74764059 74764078 TCATCTCTTCTGGATCCCTC 58 Novel Rattus norvegicus 81 AC133316.3 ENSRNOG00000061032 ENSRNOT00000083671 1 1 1 72 6 127276978 127282051 GGCATTCAGCAGGTAAAGAG 59 127276925 127276943 ATCACCTCTTTGCTTTGGT 57 Novel DesignRelaxed Rattus norvegicus 81 AC094636.1 ENSRNOG00000059578 ENSRNOT00000078881 1 1 1 84 6 127591693 127591711 GAGGTCTTCAGCAAGGAGG 60 127591011 127591029 GTACAGTCTTGTGCACAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034573.2 ENSRNOG00000056536 ENSRNOT00000085341 2 1 1 80 11 79092007 79093434 TTCAAGGACCATACAGATGAC 58 79093474 79093494 TATGCTCACCTTTAAAGGCTC 58 Novel Rattus norvegicus 81 AABR07052598.1 ENSRNOG00000055544 ENSRNOT00000081155 2 1 1 81 3 65028839 65028860 CGTAATGAATCGGTTGAATGCT 60 65027328 65028798 CAGACGGTCTCTTGTACTGG 60 Novel Rattus norvegicus 81 AABR07034669.1 ENSRNOG00000056559 ENSRNOT00000084186 1 1 1 107 11 83413093 83415193 TACATCGCGAGCAATACCT 59 83415261 83415282 TCTGTCTTGATACTTGAGAGCA 59 Novel Rattus norvegicus 81 AABR07052666.1 ENSRNOG00000054083 ENSRNOT00000091511 1 1 1 81 3 68562518 68564864 ATCAGCAGGATAAATCCAGC 58 68564905 68564926 CAATATCTTAGTCTCCTCTGCA 57 Novel Rattus norvegicus 81 AABR07034745.1 ENSRNOG00000058421 ENSRNOT00000087019 1 1 1 80 11 86505941 86505960 CATGAAGGAAACCAAGACAC 57 86504526 86505899 GAACTTTCCTGTACTGTGCT 58 Novel Rattus norvegicus 81 AABR07034745.1 ENSRNOG00000058421 ENSRNOT00000087019 2 1 1 80 11 86505937 86505957 GAAGGAAACCAAGACACAGAC 59 86504523 86505897 CTGGAACTTTCCTGTACTGTG 59 Novel Rattus norvegicus 81 AABR07052750.2 ENSRNOG00000060591 ENSRNOT00000080439 3 1 1 80 3 71947942 71950949 GAAGTGAGCTAAGAGGTCCT 59 71950991 71951010 CACCTTCTCTTTGAACTGGT 58 Novel Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 2 2 2 83 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228241 74228469 TTTAGCTTGTTGCACTCGT 58 Novel Rattus norvegicus 81 AABR07022046.2 ENSRNOG00000052639 ENSRNOT00000090070 1 1 1 60 13 104140581 104140599 TGCAGAAACACAAGACGTG 59 104140623 104144803 AATCTTTCGGTCCCAGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 3 2 3 88 12 3223494 3223512 CCTGAGGTGTAGGCTTGAC 60 3223558 3301971 CAGTAGAAGTCTTTAAGACAGATGC 60 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000092216 2 1 2 83 3 83134275 83134293 GTGACTACCCAAGGGAGAC 59 83111299 83134233 CTTATGAAACCTGGAAATCCTGAG 60 Novel Rattus norvegicus 81 AABR07052915.1 ENSRNOG00000055847 ENSRNOT00000089284 3 1 1 80 3 84147668 84149141 TACCTCTGACTGAGTTGAGTG 59 84149181 84149201 TCTGTTCATGACTTTGCTGTC 59 Novel Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 1 1 1 60 13 105918534 105919472 TTTGAAGTCACATTCCCTGG 58 105918493 105918512 TGAGGCAGTTCTGTCTATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 3 1 1 62 3 90965826 90974804 GGCTGTACCTATTTGTTTCTGG 59 90965785 90965803 CAGTTCGAGGCATTTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07024473.1 ENSRNOG00000051956 ENSRNOT00000082788 3 1 1 177 16 624638 624658 ACTAAGGAGGAAGATGTAGGA 57 618596 618616 CTACCTACATGTGGAAATGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07053412.1 ENSRNOG00000051776 ENSRNOT00000078040 3 1 1 80 3 105316719 105330172 TGTCTCATTCAGGAAAGTCTG 58 105316659 105316677 CCTGTAGTTATGCAGCAGG 58 Novel Rattus norvegicus 81 AABR07066435.1 ENSRNOG00000049194 ENSRNOT00000083795 3 1 1 83 9 8817729 8853128 AACAGCAGGTCTGAAATTCTC 59 8817666 8817684 CCTGTACCACTTCTCACCA 59 Novel Rattus norvegicus 81 AABR07004482.2 ENSRNOG00000059905 ENSRNOT00000083794 3 1 1 96 1 144895956 144895975 ATAAATCCAGTCGCTGAGTG 58 144892229 144895900 AAGAACAGACCTGAAATGTCTC 58 Novel Rattus norvegicus 81 AABR07053471.1 ENSRNOG00000053580 ENSRNOT00000077088 1 1 1 80 3 108720536 108720558 CATATCATGGAATATCACTGCCC 59 108689045 108720496 CAGGTTTGCTCCATTCTGC 60 Novel Rattus norvegicus 81 AABR07035486.1 ENSRNOG00000059220 ENSRNOT00000080542 2 1 1 123 12 17720685 17729351 AGAGAATGGGACTGTCTACAC 59 17729436 17729454 AAATACTGACCAGGCTCGA 58 Novel Rattus norvegicus 81 AABR07066567.1 ENSRNOG00000052346 ENSRNOT00000082318 1 1 1 80 9 11588954 11589331 CAAATCCTATGGAACTTGATGGG 60 11589370 11589389 CCTCCTTCTCCTGTACTTGG 59 Novel Rattus norvegicus 81 AABR07035561.3 ENSRNOG00000058864 ENSRNOT00000079265 2 1 1 60 12 19705832 19705854 CACATACTTCTGTAACATCTGCC 60 19705873 19705892 AATCCACTGCCATCTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685564 ENSRNOG00000055239 ENSRNOT00000084235 3 1 1 80 16 13002553 13002571 GGACAAGAAACCTGAGGAC 58 13002612 13005254 AGTATGCATACTCAAGTAGGAC 57 Novel Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 3 1 1 60 16 17138164 17139387 GGTGGATAAGATTCATCAAGGTC 59 17138126 17138145 AAGCTTGTGGTTACAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035778.1 ENSRNOG00000054206 ENSRNOT00000079605 3 1 1 80 12 22294184 22294202 TCTTCTCAGGACATCCTGG 58 22294244 22294878 CCACCATGAACTGTATCTGTC 59 Novel Rattus norvegicus 81 AABR07053710.1 ENSRNOG00000053290 ENSRNOT00000078027 2 1 1 83 3 121564468 121566765 AAATCCTGACCAAAGATCAGC 59 121564405 121564423 TGATGCGAATGAGTCTGGT 59 Novel Rattus norvegicus 81 AABR07024856.1 ENSRNOG00000054993 ENSRNOT00000089499 2 1 1 80 16 19400296 19409329 TGCAAACAAGACCTCAAACTC 59 19400236 19400254 AACGAGTCAGCCTAATGGT 59 Novel Rattus norvegicus 81 AABR07004868.1 ENSRNOG00000056551 ENSRNOT00000081639 1 1 1 80 1 163520433 163522430 CCTCAGACAAGGATCTGGG 59 163522473 163522492 TATGGATGTGCAGATTGCTG 59 Novel Rattus norvegicus 81 AABR07024999.1 ENSRNOG00000053922 ENSRNOT00000089576 2 1 1 60 16 24630695 24632210 CTCCCAACCTTGAGTAAATATAAGG 59 24632225 24632246 TCTGTTTCCTTGTAAGAACTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025178.1 ENSRNOG00000053455 ENSRNOT00000090846 1 1 1 80 16 30411270 30412654 TTTCTTTCGAGACTCCTCCAG 60 30412694 30412714 TGGTGTACTGCAAACATTGAC 60 Novel Rattus norvegicus 81 AABR07025799.1 ENSRNOG00000052272 ENSRNOT00000088099 2 1 1 95 16 50896032 50896050 AGCAGCTCTACCCAAACTG 60 50896712 50896731 CACTTCTGTAGCATGTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005752.1 ENSRNOG00000057137 ENSRNOT00000080259 2 1 1 81 1 195865516 195866276 ATCCATATCAGAGGAAAGAGATGG 60 195865458 195865480 GTTGTGAGATAATGTCTCATGCC 60 Novel Rattus norvegicus 81 AABR07005778.1 ENSRNOG00000059566 ENSRNOT00000091912 2 1 1 80 1 198058979 198060587 AAGGGAATACTCTGACTCTTGG 59 198060627 198060646 GTTGTCTTTAGCCTGGTGTG 59 Novel Rattus norvegicus 81 AABR07025958.1 ENSRNOG00000057980 ENSRNOT00000091333 3 1 1 106 16 56485803 56485821 GCAATGTTGACAATCTCCC 57 56485889 56523232 GTTGTCAGTCCAATTGAAGTC 58 Novel Rattus norvegicus 81 AC135822.3 ENSRNOG00000061375 ENSRNOT00000088225 2 1 1 66 3 150414909 150414927 CCAGAATATGGAGCCCAGG 60 150415794 150415812 AGTTGAGGAGTAGCCAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005808.1 ENSRNOG00000052932 ENSRNOT00000081320 1 1 1 86 1 200782123 200782141 ACAAGACTTTCAAGCTGCC 59 200767588 200782075 TTCAGATATTCGACCTCTCCA 58 Novel Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000081777 3 1 2 81 16 60002272 60004352 TGATGATGCTCAGATCACC 57 60002209 60002227 AATCTTCTGGTCCACTTGG 57 Novel Rattus norvegicus 81 AC123083.1 ENSRNOG00000060182 ENSRNOT00000078386 2 1 1 80 1 201857598 201857619 CCTCTTCTCTGTTCATAGACGT 59 201857658 201858891 CAGAAGTCGAAGATGCATCAC 60 Novel Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 1 1 1 62 3 155679390 155687588 GAACCAAGGGTTTCGAAGC 60 155679346 155679364 ATAGACATGGCACTGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026032.2 ENSRNOG00000057634 ENSRNOT00000090326 3 1 1 80 16 60082380 60083143 CAGCATAGAGTATAACATACTGCAG 59 60082324 60082345 TGTTTCATTTGGAATCGACCTG 60 Novel Rattus norvegicus 81 AABR07005837.1 ENSRNOG00000054067 ENSRNOT00000080548 2 1 1 111 1 202705053 202707120 CAGTAACCACAGGAGACCT 58 202704960 202704980 GGTGAGGATGAGTAAGGAGAG 59 Novel Rattus norvegicus 81 AABR07054487.1 ENSRNOG00000061326 ENSRNOT00000087135 2 1 1 80 3 156368731 156376918 TGTACTTGGATGCAGGGTC 59 156368669 156368687 ACTGGACATTTCTCGGGAC 59 Novel Rattus norvegicus 81 AABR07072945.1 ENSRNOG00000051892 ENSRNOT00000090476 3 1 1 80 3 156629636 156631324 CAAATCACTTCAGCTGCTG 57 156631368 156631386 ATGGTAAACGTCCATGCTG 58 Novel Rattus norvegicus 81 AABR07067742.1 ENSRNOG00000061465 ENSRNOT00000089343 3 1 1 84 9 60370917 60372314 CTTTCTCCAAATACAAGTCCCAG 60 60372358 60372376 ATTGGCAGTCACAAATGGC 59 Novel Rattus norvegicus 81 AABR07054512.1 ENSRNOG00000051934 ENSRNOT00000083405 1 1 1 80 3 158692510 158692747 CAATATTATCCTCGAAACCGCA 59 158692785 158692806 AAAGAACTGAAGCTGACAAACC 60 Novel Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000087549 3 1 2 72 16 65178783 65178802 GGGAGAAGCAGTTTCAAGAC 59 65254110 65254128 GAATCCTCAGACACTTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054554.1 ENSRNOG00000059169 ENSRNOT00000080353 2 1 1 80 3 160047036 160047056 TATGCCTCATTTCGTCTTTGG 59 160045981 160046996 ATGGTCCCTTTATCTCTAGCA 58 Novel Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 1 1 1 60 12 46494665 46495865 TCAAATACACTTAGAGCATCGG 58 46495886 46495904 AACCTCCTCAAACCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC129370.1 ENSRNOG00000051812 ENSRNOT00000085734 3 1 1 81 9 66878604 66882969 CAAGACGAGAACATGCTACAG 59 66883010 66883030 TTGGAGCACTGAATTCTAAGC 59 Novel Rattus norvegicus 81 AC132720.2 ENSRNOG00000052089 ENSRNOT00000090045 1 1 1 68 1 215586157 215586175 ATGGTCTGTTCCAGCTGAC 60 215582318 215582336 CAGACCCATAGCAGTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC132720.2 ENSRNOG00000052089 ENSRNOT00000090045 2 1 1 69 1 215586157 215586175 ATGGTCTGTTCCAGCTGAC 60 215582317 215582335 TCAGACCCATAGCAGTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 1 1 1 68 12 49031218 49034030 AGGACCTCATTGCACAGTC 60 49034062 49034080 CTTCTTCCAACTGCAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026339.1 ENSRNOG00000061696 ENSRNOT00000086537 1 1 1 93 16 72698799 72698955 TTCGGATGCTGTTACTGCT 59 72699012 72699030 TACTAGCTGAGGCACTTGC 60 Novel Rattus norvegicus 81 AC141169.2 ENSRNOG00000059041 ENSRNOT00000080464 2 1 1 80 9 69896438 69896457 AACATCAACCTCAGAGAAGG 57 69896497 69899644 GAAGAGTACCTCCTCAATACAG 58 Novel Rattus norvegicus 81 AABR07054752.1 ENSRNOG00000054244 ENSRNOT00000080321 1 1 1 80 3 168603864 168603883 ATTTGAAGCCTTCAGAGTGC 59 168603926 168604053 TGGAACTGCCTTGATCCTG 60 Novel Rattus norvegicus 81 AABR07068043.1 ENSRNOG00000051933 ENSRNOT00000080398 2 1 1 85 9 79295182 79295343 GCTCATCTGAATCAGCTGG 58 79295115 79295133 TGTTTGCATTCTTCAGCCC 59 Novel Rattus norvegicus 81 AABR07068060.1 ENSRNOG00000052067 ENSRNOT00000077925 1 1 1 80 9 80425919 80427116 GAGGTACAAAGCTTGGGTC 58 80425857 80425875 CCACTTCTCATTCCTGGAG 57 Novel Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000080924 2 1 2 61 3 174035647 174035665 CACATCTCTTGAGCTGCTG 59 174040627 174040645 AATTCTTCTGAGGCCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000078709 3 1 2 79 3 174035647 174035665 CACATCTCTTGAGCTGCTG 59 174046850 174046870 CAGATTCTTCTGGCTTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026503.1 ENSRNOG00000051884 ENSRNOT00000087757 1 1 1 80 16 79532526 79539698 GATCCTGAAGATTCTAAACGCA 59 79532467 79532485 AGAGAATTGAGAGCAGGCA 59 Novel Rattus norvegicus 81 AABR07055146.1 ENSRNOG00000051476 ENSRNOT00000079578 2 1 1 162 7 100354 100372 TCCTTGCTTCCTACAAAGG 57 93955 93973 AAAGTTCTGTGGATCGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07055812.1 ENSRNOG00000055912 ENSRNOT00000084358 3 1 1 130 7 10265082 10265101 TTTGTACAATCGAGGGACCT 59 10266038 10266059 CTTGTTGATCTCATCAGTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056013.2 ENSRNOG00000052125 ENSRNOT00000081869 2 1 1 82 7 18291570 18291591 TGGACCATTTCTTTCTTGAAGG 59 18288587 18291530 TCTGTCAAACTAGTTCTTGTGC 59 Novel Rattus norvegicus 81 AABR07039233.1 ENSRNOG00000060509 ENSRNOT00000079320 2 1 1 80 X 72707051 72707073 GAATCATCTCTGAAGAAGAGTCG 59 72707112 72707224 CTGAGACATGTTCTGCTGTG 59 Novel Rattus norvegicus 81 AABR07039234.1 ENSRNOG00000055330 ENSRNOT00000077323 2 1 2 78 X 72723956 72723975 TATGTACGCATACGGACCAC 60 72724510 72724528 TCTCTTCTCGGTGTTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 3 1 1 75 1 244877738 244907923 TTGCAGAATCCTCCCAGTG 60 244907962 244907980 GATCTGTTCTCTGCCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.1 ENSRNOG00000053506 ENSRNOT00000084842 1 1 1 80 1 244977995 244980811 GGACCTCCTAGATAAGAGCTG 59 244980851 244980871 AAGAACTATCGAGAGCTTCCT 58 Novel Rattus norvegicus 81 AABR07056103.1 ENSRNOG00000054038 ENSRNOT00000083267 1 1 1 81 7 20217442 20217460 GAAAGAAGTGGGAGTGCTG 59 20207988 20217397 TAACTTCATCCAGCCTGGA 58 Novel Rattus norvegicus 81 AABR07039697.1 ENSRNOG00000058861 ENSRNOT00000087618 3 1 1 80 X 82840088 82845590 AAACTTGACTGAATGGGATGTG 59 82840029 82840049 GGTTATCCTTCTCATTGCCAC 59 Novel Rattus norvegicus 81 AABR07006713.1 ENSRNOG00000060655 ENSRNOT00000084859 3 1 1 67 1 248987699 248987718 ACTCTACCTCTCCACAAAGC 59 249002634 249002652 TTTGTTGTGGTTGATGCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 3 1 1 76 7 24031893 24034056 GGGTCCTGAACTGAATAGAG 57 24034094 24034113 GTAAAGGCTACCACAGTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040481.1 ENSRNOG00000052994 ENSRNOT00000088056 2 1 1 80 X 102051443 102055767 AAACAAACTAAAGGAAGAGGCC 59 102055802 102055826 CACAGATGTCCATTTAAGAGTAGAG 59 Novel Rattus norvegicus 81 AC123495.2 ENSRNOG00000055653 ENSRNOT00000091034 1 1 1 80 1 251824336 251825664 ACTTACAAGGGTGGAACAG 57 251825707 251825726 GTTTCAGAAAGTCCTTGCAG 57 Novel Rattus norvegicus 81 AABR07068614.1 ENSRNOG00000060213 ENSRNOT00000080518 1 1 1 81 9 112181729 112206027 GCGAATACTCTGTAGAGATATGGA 60 112181671 112181689 GGATAAGAGGCAGGCTCAG 60 Novel Rattus norvegicus 81 AABR07026984.3 ENSRNOG00000055805 ENSRNOT00000086573 2 1 1 85 17 8394340 8394358 GACTCTGTGTCTCCCACAG 59 8394404 8395653 CTGCATCTTCACACTAGTATCC 59 Novel Rattus norvegicus 81 AABR07056576.1 ENSRNOG00000054263 ENSRNOT00000087101 3 1 1 94 7 30507259 30527256 ATCTGCTAAGGCTGTGGAG 59 30527314 30527332 CTAAAGATGCAGTCGGTGG 58 Novel Rattus norvegicus 81 AABR07027030.1 ENSRNOG00000055200 ENSRNOT00000079154 2 1 1 80 17 11661160 11670306 TAAACAAGCAAGCACCACTG 59 11661099 11661119 AGCTCATCTTTGTACTAGCCT 59 Novel Rattus norvegicus 81 AABR07056605.1 ENSRNOG00000061490 ENSRNOT00000077675 2 1 1 124 7 31988091 31988109 TTCAAGCTCTGTTGTGGGA 59 31988196 32049205 TTGTCAAACCTTTCAACGGG 59 Novel Rattus norvegicus 81 AABR07042699.1 ENSRNOG00000060999 ENSRNOT00000077644 1 1 1 104 19 4462813 4483642 ACTATGAGATGTTGCCTGCT 59 4462728 4462746 ATTCATGAGCAGCTCTGCA 60 Novel Rattus norvegicus 81 AABR07068949.1 ENSRNOG00000060886 ENSRNOT00000082853 2 1 1 88 8 3074877 3074895 TGCTCACTAGCTTGTTTGG 58 3074944 3096296 TCTTCAGGTGAGTTTATACCTG 57 Novel Rattus norvegicus 81 AABR07027072.1 ENSRNOG00000053171 ENSRNOT00000091031 2 1 1 60 17 13057569 13069338 GTGTTTACTGAGCATGATGGAG 60 13057530 13057549 GAGTATGTGGTCCTGATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07072539.4 ENSRNOG00000060029 ENSRNOT00000085586 1 1 1 88 17 15336115 15336499 CAAAGTGAGCTTTGAGCCTC 60 15336046 15336064 ATATGGCTCCTGGTGAAGC 60 Novel Rattus norvegicus 81 AABR07056638.1 ENSRNOG00000057175 ENSRNOT00000079330 2 1 1 94 7 34323196 34323216 GGGCTCAACTGAAGAATTTGG 60 34321987 34323140 CATTTGCGTTTGCCTTTGC 60 Novel Rattus norvegicus 81 AABR07042911.1 ENSRNOG00000056588 ENSRNOT00000082572 3 1 1 101 19 14644784 14646335 ATCCAGTCTTTATGACTGCAC 58 14646398 14646416 TTCTGAGCAGAGACCTGAG 58 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089968 2 1 3 80 17 21002722 21005681 TTGCAGTTTAGAGGACAGC 58 21005723 21005743 GTGTGATGATCAAGAGATGGT 58 Novel Rattus norvegicus 81 AABR07056811.1 ENSRNOG00000053861 ENSRNOT00000085243 2 1 1 70 7 42113477 42113496 ATTCAAGCAAAGTTCCCAGC 60 42114954 42114973 TTGTCTTAGCTTGTGAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027287.1 ENSRNOG00000051834 ENSRNOT00000086273 3 1 1 91 17 22983150 22984074 AAGAACAATACACCACTTGGG 59 22983079 22983099 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07056953.1 ENSRNOG00000061159 ENSRNOT00000078831 1 1 1 80 7 48553917 48553937 CTCCAGGATGTCATCTACGAC 60 48553975 48644730 TGTTAGAGATTCGATGTCCTGAG 60 Novel Rattus norvegicus 81 AABR07043030.1 ENSRNOG00000055058 ENSRNOT00000083618 2 1 1 60 19 17928890 17928908 GCATCAAACACAGCTTCAC 58 17926611 17926630 GAGAAAGCTATGCAGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056998.1 ENSRNOG00000052964 ENSRNOT00000083398 3 1 1 67 7 50639890 50639909 ACTAAAGGGCTTTCTCCCTC 59 50639939 50640311 GATGCCACGATCATCTTGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07006925.1 ENSRNOG00000056850 ENSRNOT00000089632 1 1 1 89 1 271769391 271771578 AGCTGAAAGTTCTGTCATCAG 58 271769322 271769341 CCAGTTCGTTGCTAAGTCTC 59 Novel Rattus norvegicus 81 AABR07027371.1 ENSRNOG00000056603 ENSRNOT00000077509 1 1 1 80 17 26845230 26845778 TTCCTACATCCAAGGCCAC 59 26845168 26845187 TCAAACAACGTCGATGACAG 59 Novel Rattus norvegicus 81 AABR07027394.2 ENSRNOG00000054220 ENSRNOT00000089190 2 1 1 80 17 28008575 28008705 TATAGAAACACCCTCAGGTCAG 59 28008516 28008535 TTTCTGTCTGGGAAAGGACC 60 Novel Rattus norvegicus 81 AABR07069588.1 ENSRNOG00000054853 ENSRNOT00000089148 3 1 1 80 8 32737970 32741178 AATTCACCCAGTTGGTTGG 58 32741221 32741240 AGGTCATTCAGAAGAGTCCT 58 Novel Rattus norvegicus 81 AABR07027431.1 ENSRNOG00000061171 ENSRNOT00000082574 1 1 1 80 17 30818769 30822339 CATGAGCTTCTGGATGTACAC 59 30822381 30822399 GGTCTTTCTGACGATGTGG 58 Novel Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 3 1 1 79 7 63270920 63270938 AATTGAGCTGGAGTCAGCA 59 63269739 63270879 CCTGGGACATATTTAGCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043429.1 ENSRNOG00000059075 ENSRNOT00000079937 1 1 1 80 19 28317994 28318647 CACTTCTATCACAACCTGCAC 59 28317934 28317952 CTCCTGCTTCAATGTGACC 59 Novel Rattus norvegicus 81 AABR07043454.1 ENSRNOG00000055759 ENSRNOT00000083349 3 1 1 85 19 28706876 28707930 CATGTGGAATGTGGAAGGC 59 28707978 28707997 CCTCTCCTCTTCCTGATTGG 59 Novel Rattus norvegicus 81 AABR07043601.4 ENSRNOG00000058833 ENSRNOT00000090322 1 1 1 60 19 30775793 30775812 CTCAGATCCAAGAGAAACGA 57 30776725 30776743 CTGAAGATAGGAGCACGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069816.1 ENSRNOG00000052868 ENSRNOT00000086487 3 1 1 96 8 40855289 40855307 TTGGACAGACTGGAGTGAG 59 40795822 40855229 GTCAGTCTCCCATCCTTCC 59 Novel Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000084015 3 1 2 83 17 37687591 37689161 TAGAGGGAGAAGGTGTCGT 59 37689207 37689226 CCCAAGGCATTTCAGTAGGA 60 Novel Rattus norvegicus 81 AABR07057510.3 ENSRNOG00000061463 ENSRNOT00000082302 1 1 1 80 7 75228803 75248901 ATTTCAAAGGAGGCTTTCTTGG 60 75248940 75248960 AAGTAGGTACTCAGACTGAGC 59 Novel Rattus norvegicus 81 AABR07043667.1 ENSRNOG00000054455 ENSRNOT00000087527 1 1 1 102 19 35185307 35190976 CATCAAAGGTACCCTAAGAAGC 59 35191037 35191057 GAATACTGATTGAGCCATGGT 58 Novel Rattus norvegicus 81 AABR07043667.1 ENSRNOG00000054455 ENSRNOT00000087527 3 1 1 103 19 35185307 35190976 CATCAAAGGTACCCTAAGAAGC 59 35191038 35191058 AGAATACTGATTGAGCCATGG 58 Novel Rattus norvegicus 81 AABR07043684.1 ENSRNOG00000054327 ENSRNOT00000079272 2 1 1 70 19 35909902 35909922 TAGAAGAATGGATGGACAGGA 58 35904402 35904420 AATCCTTGCCAGTCTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 2 2 3 80 10 15260 15278 AAGCTGAAACCAGAAACCG 59 13173 15219 CAAACTTCTCCTTCACAGACTC 59 Novel Rattus norvegicus 81 AABR07057614.1 ENSRNOG00000055014 ENSRNOT00000089923 3 1 1 60 7 80270628 80270649 TACATTCACAAGTCTCAGGAGG 60 80270669 80283152 ACTTCATCAATTACACCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000077876 1 1 2 80 19 39502516 39502536 GGACTTCATCTCATTGCTCAG 59 39502576 39504266 TGTAACTTCAGAGAATCTCGC 58 Novel Rattus norvegicus 81 AC112557.2 ENSRNOG00000057691 ENSRNOT00000078804 3 1 1 68 8 48565080 48565099 CATGTTCTTTATGGCCTGGG 59 48565130 48567077 TCCTGTCTTAATGCGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007566.1 ENSRNOG00000054888 ENSRNOT00000086723 2 1 1 80 2 19431874 19431893 TATGTAGTTGATCGCAGCCA 59 19431935 19477034 TCTGGTTGTCTTACCTTGGG 59 Novel Rattus norvegicus 81 AABR07029217.4 ENSRNOG00000056131 ENSRNOT00000078756 1 1 1 80 10 15078038 15085972 AAGGACAAAGAGAATGCTGAC 59 15077978 15077998 ACTTCTGTTGCTCTAGAACCA 59 Novel Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 3 1 1 78 2 22864609 22867900 ACTTGTTTGCCAGACAAAGG 59 22864550 22864568 AATGTCATGGGAGAGGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC119699.2 ENSRNOG00000058480 ENSRNOT00000083520 2 1 1 81 10 16507228 16513537 AACCGCCTGAAATCTATGC 58 16507165 16507183 GAGTCGTCCTGTATTCTGC 58 Novel Rattus norvegicus 81 AABR07041019.1 ENSRNOG00000056360 ENSRNOT00000084894 2 1 1 88 X 117305266 117305284 ATCCAGTAAATGCTGCCTG 58 117305336 117323132 TGACTTCGTTCTTTGTGGG 58 Novel Rattus norvegicus 81 AABR07058124.4 ENSRNOG00000056785 ENSRNOT00000080596 1 1 1 80 7 101284594 101308855 GTAAGATCACAGATGCGTTGTC 60 101284535 101284554 AGATCACATCTGCTCCTTCC 59 Novel Rattus norvegicus 81 AC141541.1 ENSRNOG00000055007 ENSRNOT00000078418 1 1 1 80 8 54892420 54892438 ACTGTTTGTGCCTAACACC 58 54888216 54892377 GAAATGTCTCCATTCCTCCA 57 Novel Rattus norvegicus 81 AABR07058173.1 ENSRNOG00000056959 ENSRNOT00000087542 1 1 1 117 7 103557104 103557124 GAAGTTCAAGAAAGGATGCTG 58 103568784 103582817 TGATGCTTGAACCTTAGCA 57 Novel Rattus norvegicus 81 AABR07070161.2 ENSRNOG00000052054 ENSRNOT00000083870 1 1 1 107 8 55535806 55536357 ACTAATGCTGGTGACGTCC 60 55535717 55535735 TAAGATGGGCAGGTGAGTG 59 Novel Rattus norvegicus 81 AABR07029526.1 ENSRNOG00000053102 ENSRNOT00000081031 2 1 1 83 10 32637276 32695139 GTGAAGGAGACATAGAAGAACC 58 32637214 32637235 ACAATGTCCTTAACTTCCACAC 59 Novel Rattus norvegicus 81 AC115159.2 ENSRNOG00000059416 ENSRNOT00000084731 2 1 1 108 10 35965611 35965632 TCATAAGTTGTCTGTTTCCTGC 59 35962360 35965548 CCCTCAAAGGATCTTTATCTTTCTG 60 Novel Rattus norvegicus 81 AABR07072106.1 ENSRNOG00000060925 ENSRNOT00000089709 2 1 1 88 10 38053608 38053626 TTAAGGTCAGCCAGGACTC 59 38050169 38053557 GTTCTTGATGGCAAGACCTG 59 Novel Rattus norvegicus 81 AABR07029634.4 ENSRNOG00000057177 ENSRNOT00000089816 3 1 1 97 10 41816367 41816390 CCAAATATCAGGAAAGAGATGGAG 59 41795051 41816311 AGATTCTTGGCATCCTGCT 59 Novel Rattus norvegicus 81 AABR07029634.2 ENSRNOG00000056352 ENSRNOT00000086111 2 1 1 80 10 41833742 41835184 TTCTTTAGGGCACATCTGC 58 41833680 41833699 CCTCACATTCGTTATGGGTC 59 Novel Rattus norvegicus 81 AABR07070341.1 ENSRNOG00000053021 ENSRNOT00000078877 2 1 1 78 8 66356776 66356797 AGATTCTGAAGCAAGAGAAGAG 58 66356600 66356618 CTTCCATAGGTCACAGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027979.1 ENSRNOG00000053341 ENSRNOT00000082797 2 1 1 86 17 51949041 51980921 GTCTTAGAGGCTTCAAACGT 58 51980970 51980988 AAACTTCCACAACTGCTCC 58 Novel Rattus norvegicus 81 AABR07007861.1 ENSRNOG00000057995 ENSRNOT00000090612 1 1 1 92 2 31677263 31679160 GAGTGCAAACCTTGTCCTG 59 31679216 31679234 TAATGGTTGTCCACGGGAG 59 Novel Rattus norvegicus 81 AABR07028076.1 ENSRNOG00000058667 ENSRNOT00000087867 1 1 1 91 17 55966250 55966271 CAGTCTGTGTATCTGTGTAGAG 58 55973725 55973743 ATTATGTCATTGCCAGCGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028172.1 ENSRNOG00000058305 ENSRNOT00000090957 1 1 1 60 17 58678142 58680088 GTTGGGTGTCTTTGTACCAG 59 58678101 58678119 ATCAGCAAACTCAAGTCGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044559.1 ENSRNOG00000056023 ENSRNOT00000084010 3 1 1 86 20 10595766 10595784 ATTGATGGGCTGAGTGGAG 60 10595834 10596554 AACATCGCCTACGAGTCTG 60 Novel Rattus norvegicus 81 AC097312.1 ENSRNOG00000056114 ENSRNOT00000087367 2 1 1 87 4 7448426 7448445 AATTCCAGGGTCTACAGCAG 60 7448495 7449208 CATGATGCCCTTGTCTTGC 60 Novel Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 1 1 1 62 4 16953756 16953775 GTTGAAATTCTCCAGTGCAG 57 16953313 16953734 ATCTGGTAAATGATCTGGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008013.1 ENSRNOG00000053649 ENSRNOT00000081654 3 1 1 68 2 38743675 38745789 TTTAAGTTACAGGCTGCTGG 58 38745820 38745838 CATGCAGCATCTCAGAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070774.1 ENSRNOG00000055032 ENSRNOT00000088991 3 1 1 75 8 84044434 84044452 AATGCAGCTTCACATCTGG 59 84002082 84002102 CCGTTGTCACTGTTATCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070775.1 ENSRNOG00000060174 ENSRNOT00000091831 1 1 1 80 8 84143186 84144797 GAGTTCAGGATTCTGGTGGA 59 84143125 84143143 AAAGACAAACAGCCGTTCG 59 Novel Rattus norvegicus 81 AABR07059632.2 ENSRNOG00000052413 ENSRNOT00000078043 2 1 1 80 4 28271837 28272491 TAACTTCTGTTGCAACCTGC 59 28271776 28271795 CTCTCCTGCTTCAATGTGAC 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 2 1 1 65 8 84886687 84893245 AAGAGCAGCAGACAAGGAG 60 84886640 84886659 TCCTTCTCTTCCTCTTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044794.1 ENSRNOG00000056554 ENSRNOT00000080565 3 1 1 88 20 20893583 20894530 CTAGCACAGGGAAAGAAGGT 60 20894581 20894599 GTGCTCTGAGACTCTAGCC 59 Novel Rattus norvegicus 81 AABR07070872.1 ENSRNOG00000061781 ENSRNOT00000090757 1 1 1 80 8 89173277 89173296 AAGTGAAACCAGGATTTGCT 58 89173339 89174171 CTTCAACTCACATGGTCCA 57 Novel Rattus norvegicus 81 AABR07071101.2 ENSRNOG00000057868 ENSRNOT00000084793 1 1 1 80 8 100141690 100141709 AGACAGGGTCAAATCTGCTC 60 100141750 100143304 CAGAATTCAACCCAAGGACTC 59 Novel Rattus norvegicus 81 AABR07059875.2 ENSRNOG00000054496 ENSRNOT00000091342 2 1 1 81 4 39647016 39649609 GAAACACATGTCATGACTTGAG 58 39646956 39646974 GCAGGACTCCAAGTAAAGC 59 Novel Rattus norvegicus 81 AABR07044837.2 ENSRNOG00000060235 ENSRNOT00000088740 3 1 1 86 20 23073705 23073723 TGAACAAGAGTGGGACCAG 59 23083563 23083586 ATGTTATAGACAGATGAGACTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044875.1 ENSRNOG00000056803 ENSRNOT00000077159 3 1 1 64 20 24445735 24445753 GAGGTCATCAGAGTAGCCT 58 24445339 24445710 CAGACAATTACATTTGTCCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028874.2 ENSRNOG00000061654 ENSRNOT00000088066 3 1 1 103 17 89541792 89541812 TTACACCTGTTATACTGGCTC 57 89536071 89541730 AGACCTGTCTAATTCATCAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008287.1 ENSRNOG00000056600 ENSRNOT00000079713 1 1 1 90 2 51600255 51613842 TCTTCAAGCTGCAGATCAG 58 51600183 51600201 TATCCACTGTCCCACAGAG 58 Novel Rattus norvegicus 81 AABR07008341.1 ENSRNOG00000054353 ENSRNOT00000091750 2 1 1 103 2 53510846 53510866 CTGGAGAATGACAGCTTTGAC 59 53510238 53510256 CAAGATGCTCCCATTTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008386.1 ENSRNOG00000058923 ENSRNOT00000077095 3 1 1 81 2 55309129 55309147 TGGTGTTCTGTTCTTTGCC 59 55309191 55340511 GAGTGAAGATGTCTGTGGAC 58 Novel Rattus norvegicus 81 AABR07045313.1 ENSRNOG00000052239 ENSRNOT00000080484 2 1 1 96 20 42398709 42398727 CTTCTGGAGATTGCCACAC 59 42399936 42399954 GATGTGAATGGAGTTCGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008491.1 ENSRNOG00000059296 ENSRNOT00000082976 1 1 1 80 2 61496068 61507501 GACTAAAGGGTTCATGTGAACAG 60 61507538 61507559 GTGATAAGGTAAATGGTAGCCG 59 Novel Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650,ENSRNOT00000078712 3 2 2 80 4 68428818 68428838 GGAACGTAGACAAACAGTTCC 59 68428877 68429769 CAGTGACATTTCTGGCATTAGG 60 Novel Rattus norvegicus 81 AABR07060379.1 ENSRNOG00000060461 ENSRNOT00000080619 3 1 1 80 4 70483516 70483538 CCAGAGATGTACCTTAAGTTCCT 59 70480350 70483478 GTAGATGAACAACCTGGAACC 59 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 3 1 1 64 2 65010648 65011737 TGAGCACACTTTCTATGGAG 57 65010603 65010623 CTGACTAGGGTATGTCTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060539.1 ENSRNOG00000054527 ENSRNOT00000077611 2 1 1 62 4 79184164 79185861 TTGCTCAGATTGTTAAGGGAG 58 79184122 79184140 GCTTCTTTCAGGTTCCAGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07043829.2 ENSRNOG00000051461 ENSRNOT00000078854 1 1 1 87 19 42964791 42964810 TGGCCAATGGTTCAATTCTG 59 42964859 42966566 AGAGGACATCTGGCTTTCTG 60 Novel Rattus norvegicus 81 AABR07008597.1 ENSRNOG00000053100 ENSRNOT00000085017 2 1 1 83 2 66285636 66304340 ACACTGACTTATGGGACAGC 60 66285572 66285590 GACTTCAGAGTCTGCCCTG 60 Novel Rattus norvegicus 81 AABR07060560.4 ENSRNOG00000057253 ENSRNOT00000083187 2 1 1 135 4 80811256 80849094 CAGGAATTCTCAAGTGTTTCTG 58 80811142 80811161 AATGTTCTTTCTCCTCTGGC 58 Novel Rattus norvegicus 81 AABR07044081.2 ENSRNOG00000061604 ENSRNOT00000081420 3 1 1 81 19 56544896 56546221 GGAGACTGAGAGCTCTGTC 59 56546266 56546284 CTCTGAGGACATCAAGGCT 59 Novel Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 2 1 1 76 8 130967674 130967900 TGGTGCTAGGAACGAACAG 60 130967616 130967637 AGTCACAGCAATACATTTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 1 1 1 69 7 137542338 137543393 CACACTGTACTTCAACAAGAC 57 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072667.1 ENSRNOG00000060506 ENSRNOT00000077394 3 1 1 80 19 59690889 59700237 TCTTCTAGAAACGGACAGACTC 59 59690830 59690850 CTAACACGGGTGATTTCACTG 59 Novel Rattus norvegicus 81 AC103129.5 ENSRNOG00000058860 ENSRNOT00000084402 2 1 1 80 7 139993194 139993212 TCCATCTTCAACTGCAGGG 60 139993254 139997043 AATGGATGTGCTTCTTTGCTG 60 Novel Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 1 1 1 60 7 143620302 143620321 CAGCTGCTCATCTATGTCTC 58 143620342 143625150 TAAGTACCTGCAGATTTGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 2 1 1 60 7 143620303 143620323 AGCTGCTCATCTATGTCTCAG 60 143620342 143625151 TTAAGTACCTGCAGATTTGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009373.2 ENSRNOG00000055250 ENSRNOT00000091734 1 1 1 80 2 94866767 94868721 CTAAGGAAGAATGGAACACGA 58 94866707 94866726 TAAGAGGCACTTGTCATTGG 58 Novel Rattus norvegicus 81 AABR07009634.2 ENSRNOG00000052903 ENSRNOT00000091882 1 1 1 100 2 106593242 106593263 GGAATTGCATAACTACAAGGAC 58 106660534 106660554 TCCACTTGACAAGATGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010040.3 ENSRNOG00000060371 ENSRNOT00000092076 1 1 1 82 2 121772782 121774058 TGTATAAGCAGGACCTCCA 57 121772718 121772736 AAAGTAGTCTTCGGTGCAC 58 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 3 2 2 67 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399604 156399623 TAGTTGTTCCTGGCCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07011084.2 ENSRNOG00000060521 ENSRNOT00000078172 3 1 1 132 2 157392333 157392351 ATCTGAGCCAGTGATCGTG 60 157392447 157402615 TTGTCTCCAGCTTCTCCTC 59 Novel Rattus norvegicus 81 AABR07011088.1 ENSRNOG00000054942 ENSRNOT00000083257 3 1 1 81 2 157634334 157635732 TTCACGCACATGTAAAGAGTC 59 157635774 157635793 ACAGGAGCTATCATCACAGG 59 Novel Rattus norvegicus 81 AABR07011947.1 ENSRNOG00000061687 ENSRNOT00000090996 3 1 1 84 2 177482374 177489455 CAGAGACTTGGGTGGACTC 59 177482308 177482329 GTCTCCTCATATGTAGTCAGCC 60 Novel Rattus norvegicus 81 AABR07012040.1 ENSRNOG00000056769 ENSRNOT00000077123 2 1 1 62 2 183343855 183343975 AGAGCTGAGGAGTTTGTGG 59 183343811 183343829 TGAATGGGTCAGTACCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012053.2 ENSRNOG00000053765 ENSRNOT00000090222 2 1 1 120 2 184123024 184123044 TTGACAGTGGTACCTTATGTG 58 184111943 184121818 AATCCCATTTCCCTTCTGC 58 Novel Rattus norvegicus 81 AABR07014205.1 ENSRNOG00000053826 ENSRNOT00000084893 2 1 1 80 14 5495822 5495841 AGCAGATGCCACAATTAGGT 60 5495881 5507617 CTTGCTTGTATTCTTTGCACTG 59 Novel Rattus norvegicus 81 AABR07072374.2 ENSRNOG00000057504 ENSRNOT00000090980 2 1 1 80 14 11453768 11453933 TCAGAAGGATCAAGGTCCA 58 11453706 11453725 TGGTAAATGTCAGACACCAG 58 Novel Rattus norvegicus 81 AC136013.4 ENSRNOG00000061793 ENSRNOT00000091589 3 1 1 76 14 17659901 17659919 TAGAGAAGGGCCACAATCC 59 17661225 17661243 GTGGACCCAGATCGATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 3 2 2 95 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040927 204040946 GAGCTTCATCCAATGCAGAG 59 Novel Rattus norvegicus 81 AABR07013435.1 ENSRNOG00000059205 ENSRNOT00000084783 1 1 1 81 2 237343402 237343420 GAAGCATCCAGAGGAAAGC 59 237339694 237343362 GAAGTCAAGATCTGACTCATTTCC 60 Novel Rattus norvegicus 81 AABR07013784.1 ENSRNOG00000061028 ENSRNOT00000080709 1 1 1 80 2 256567934 256568659 TGGAATAATTGCAAGACCCA 58 256568701 256568720 CTTCATCCTCCCTTTGAACC 58 Novel Rattus norvegicus 81 AABR07013914.1 ENSRNOG00000058005 ENSRNOT00000077348 2 1 1 84 2 262799847 262803677 TCCTGATAGGTGAACTACAACAG 60 262803721 262803739 AACAGGTGACTGTCACTCC 59 Novel Rattus norvegicus 81 AABR07013057.1 ENSRNOG00000060159 ENSRNOT00000090294 2 1 1 60 2 220647230 220647248 AGCTACAAACAGGTCCAGG 59 220645953 220645971 AACTGCATTTGACTGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899 3 1 4 99 3 140225765 140227416 ATACGAGGCAAGGTCACTG 60 140230567 140230586 AAACTCAGGTGTGAGATGGG 60 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076767 1 1 2 80 7 115828729 115829013 CTGGTGATTTGCTTAGGTGAC 59 115828669 115828688 TCTGAGGCTGGACTTAACTC 59 Novel Rattus norvegicus 81 AABR07010672.1 ENSRNOG00000054545 ENSRNOT00000080780 3 1 1 85 2 147010504 147010522 GGAGGAGACAACAGGACTG 59 147010570 147013993 TGTTCCTTGGTACAGAAGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053149 ENSRNOT00000082391 2 1 1 64 4 139837335 139837354 TGTCTGCTGTATCACATGTG 58 139837377 139837399 ACTCAGTATAGACACAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094811.1 ENSRNOG00000047066 ENSRNOT00000072177 1 1 1 60 12 25262544 25262563 CCTGAACTCAGAGATCCTCC 59 25262586 25262604 TAGCTCGTGCCTTTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041852 ENSRNOT00000063605 3 1 1 60 1 252987427 252987447 TTGGAAGCTAAACAACGTTGG 60 252987467 252987487 GCACAGTAAGCCATTTCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 3 1 1 67 18 40124192 40124210 CCCAGTGTTACTGGGACAG 60 40124243 40124261 TTGACTTGAATCCTTGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 3 1 1 60 16 19954695 19954713 CGACTTCAACAGCAACTCC 59 19954741 19954759 TGTCATTGAGAGCAATGCC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 3 2 4 88 5 77902272 77902290 GTAAATGGAGAGTGCAGGG 58 77749598 77902221 GTATTCCCTCCGTCATACTC 57 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 3 2 2 80 9 4093076 4093095 ACAACTGGAGTCAGATTCAG 57 4093137 4093504 ATGTTGTCCCTGATTTAGGG 57 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079 1 1 2 80 7 142861355 142868588 TTCTTCCTGATGGAAGACCTG 60 142861295 142861315 GCTTCCATTTGTAGACTGCTG 60 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079 3 1 2 80 7 142861363 142868598 CTGACTTCAATTCTTCCTGATGG 60 142861305 142861326 GTAGACTGCTGTTGTAGAAAGG 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968 2 1 3 107 X 65455501 65559767 TACAAGGAGGATGGTCACAG 59 65455413 65455431 CTGTCGAACAAAGCTTGCT 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076968 3 1 3 108 X 65455501 65559768 TTACAAGGAGGATGGTCACAG 60 65455413 65455431 CTGTCGAACAAAGCTTGCT 59 Novel Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 1 1 1 60 X 100207598 100207616 CCTACTACCACCAATGCCA 59 100206833 100206852 CGACAATCTTTCCTGGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 3 1 1 61 5 107288852 107288870 TGAAGCTGAAAGAAGCCAC 58 107288805 107288823 AAAGAGGTCGAGGATCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056667 ENSRNOT00000084890 3 1 1 68 1 91464545 91464565 CCAGTAGGAGTCAGAGAAGAG 59 91464595 91464613 TCATTCAGATGCCCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000076305,ENSRNOT00000055658,ENSRNOT00000083678 3 3 3 80 5 164953616 164954139 TCCTGGAGAAGAACGATGTG 60 164954179 164954200 CAAAGACAAACTTCTCCACTGG 60 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000076934,ENSRNOT00000029245 2 3 3 117 X 73667467 73667486 TTTCACAAGCATGCCAAGAG 60 73666604 73666912 CATGAGAACTTCCCTCCCG 60 Novel Rattus norvegicus 81 U4 ENSRNOG00000057636 ENSRNOT00000089047 3 1 1 60 2 94735142 94735162 TTTGCGTAATGGCAGTATCAC 59 94735102 94735121 AATTAGCAATAATCCGCGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119462.1 ENSRNOG00000058599 ENSRNOT00000081209 1 1 1 60 10 86579935 86579954 ATTCATACACTCTCACGCTC 58 86579972 86579995 GAGAGTATGTGAGTGTATGTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019888.1 ENSRNOG00000053960 ENSRNOT00000090887 2 1 1 60 13 6055528 6055548 TCCATCATGTTCTAGTCACAC 58 6055488 6055509 ACTAGCATCTCTACTTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0746.3 ENSRNOG00000051300 ENSRNOT00000076663 2 1 1 60 X 73758179 73758199 AGATGTTTACTTGGGTTCCTG 58 73758139 73758157 GGCTTTACAGAGCTTTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068221.1 ENSRNOG00000048180 ENSRNOT00000035085 3 1 1 110 9 91063582 91063604 GTTACTAAAGATGCATGTGGG 57 91063492 91063510 GTAGCTTCATACCCAAGCA 57 Novel Rattus norvegicus 81 AABR07053180.1 ENSRNOG00000058655 ENSRNOT00000090423 2 1 1 71 3 95731143 95731164 GGTTACCTGATGCTAAGAACAC 59 95731198 95731218 GCAGTTTAGTCATCTGTGACC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0829.1 ENSRNOG00000051025 ENSRNOT00000075859 2 1 1 84 13 77892350 77892368 GAGAAACACTTTGCTCGGG 59 77892413 77903732 ACAGCTGAACCTCAGTATACAG 60 Novel Rattus norvegicus 81 AABR07034964.1 ENSRNOG00000052516 ENSRNOT00000082692 1 1 1 60 12 2262068 2262089 GAAACTAGAAACCTGTAGTGGC 59 2262028 2262047 CATGAATCTAAGTGCACACG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000083943 1 1 2 95 16 31273646 31274409 ACACTCATCAGACCATACCA 58 31273433 31273452 CCTAAGGGTCTAACAGAGCA 59 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627 2 1 2 80 1 254567149 254568216 TGGACAAGAAGAGTTAAGGGA 59 254571389 254571409 TCAGTATTGGTACTTGAGGGA 58 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258 1 1 2 80 13 95983836 95984148 CTTTCTTCTGGCCATTACTTATCTC 60 95985672 95985693 CCACGATTTAAATGTGTCTCCT 59 Novel Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 3 1 1 63 8 42786940 42786958 TTCCTTCTGTTCCTGAGCA 59 42786988 42787006 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056643.2 ENSRNOG00000055887 ENSRNOT00000090823 2 1 1 74 7 34484785 34484803 GAATGGAAGGCATAGCGTG 59 34484843 34484861 TGGTAAGGAGGATGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304 3 1 2 120 2 208383458 208383476 CTGACAACAGAGAAGACCG 58 208385092 208392611 GATCAGAATGGACATTCGGG 59 Novel Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 2 1 1 119 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673858 110673876 CCATGACTGCAGAACTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053046 ENSRNOT00000091091 1 1 1 60 19 24884211 24884229 TTTATGAGTACTGCGCTCC 57 24884252 24884271 TCAGCAAGCTTTCTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047744.2 ENSRNOG00000060249 ENSRNOT00000036616 2 1 1 66 5 45556455 45556477 TCCTAGCCATTCTGACTTGTG 60 45556409 45556427 TAGTCATCAGGGAAAGGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 3 1 1 67 2 2510218 2510241 TCTCCAACTACTGGAACTTATCAG 60 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091 1 1 2 147 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31265857 31267619 CGACAAATACTCTTTCTGACGA 59 Novel InUTR Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 2 1 1 60 13 54914980 54914998 AAAGAATCTCCTCCCAGCA 58 54915021 54915042 GTAATAAAGTACTCGCTGCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 3 1 1 87 9 110055970 110055989 GGGCTAAAGGGAAATTTGGA 58 110055901 110055919 TGTGTCAGAAAGGGAAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 3 1 1 76 X 157458861 157458880 ACATTCTTCTTGCAAGGGAG 58 157458803 157458827 GGTAAAGGGATGGATCTCTATAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 2 1 1 73 20 896888 896909 TCTCTGCTATACCACTTCTACC 59 896946 896965 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000062051 1 1 2 90 1 1440117 1440396 AACCAAGACCAGTGGTCAC 60 1440045 1440064 GTTGAATTCCCAGGAAGCAC 60 Novel Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 1 1 1 60 14 58282725 58282743 TTCATTTCAGCGACATGGA 58 58289729 58289747 AAATTCAGTGGCCATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000079528 3 1 2 81 10 67111164 67111184 AAGAGAAGTGAACTTGACCTG 58 67110306 67111121 CAGAAGCACACTCTAGCAG 58 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 3 1 1 105 14 104764445 104764463 AAGGGTGAACCTGTACTGG 59 104768582 104768600 GGAGATGCTTGCAGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 1 1 1 60 4 132914645 132914665 TTTGCCTTTGTTCTCACTCAG 59 132918164 132918183 TGTTGCCTTTAATGTGAGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 1 1 1 61 10 93238200 93238221 TGAAATGATGGAGAATGTGGAG 59 93239922 93239943 CACCTATTTGATCAGCATTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 3 1 1 87 1 30666706 30666724 TCTACACAGTCCACCAGTG 59 30666151 30666169 AAAGTAAGATGCCCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 2 1 2 60 15 20340588 20340606 CGTTAATTCTCCTCAGGCA 57 20340924 20340944 TACAGTTGGTGTCTAAACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000082897 2 1 3 149 20 56198185 56198203 CGTCTCTGTCCTCCATGTG 60 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07001452.1 ENSRNOG00000054504 ENSRNOT00000089088 2 1 1 70 1 45409547 45409567 TTTATTTCAGTCTTCGTCGGG 59 45409399 45409417 TCTCAGCACATAAACCGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 2 1 1 60 18 50133432 50133450 GCCTTGTATCCAGAGTCAC 58 50093995 50094013 TCTGTCAAAGAAGTCAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 1 2 2 93 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081099 167081117 AAGTTGTTTGTCTGGACGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 3 1 1 60 18 67748210 67748228 AATATGCCTGAAACCTGCG 59 67695153 67695172 ATGTCGCATAGTTTCCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 2 1 1 106 15 84004986 84005005 GTTCAGAAGGTTTCTGCTGC 60 84009913 84009931 CTCTGTGCTTCCCTCTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088122 1 1 2 84 15 87456925 87470767 GATGGAAGAGATGCAAGCG 59 87456859 87456877 AGTCAAACCTCACAGAGCC 60 Novel Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 3 2 2 81 1 88265242 88266843 TTAAGGAAAGCAAAGGCTGG 59 88266882 88266905 GATGACTCTTCTTCATAGAGTTCC 59 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 3 1 1 91 15 97420705 97420726 CTAGAAACAATGGCTTTCTCAG 58 97421813 97421833 GTTACTTACTGGCTTGCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 1 1 1 62 3 53506043 53506061 GAAATGTCAATCCGCTGGT 59 53444349 53444367 ATCCCTGATTGCTTCCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 3 1 1 68 11 64195367 64195385 CTACCGAAGGACCATTGTG 58 64225618 64225636 TCTTACTGTGCATGCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853 1 2 3 84 6 125302280 125302301 GCCTTCTATATTGTGAGATGGA 58 125298541 125302236 GCCTTTCATTCCATATCCCA 58 Novel Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 3 1 1 141 11 72450132 72450152 TCCTTGACCCAATCTGAAGAG 60 72450606 72450624 GAAGCTTCTGAGTCACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043 3 1 2 85 12 3807802 3807929 TCATGAAGGCATACTCCCTG 59 3807976 3807995 TACCTGCATGAGGAGTAAGC 59 Novel Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 2 1 1 60 3 90974784 90974806 GAGGCTGTACCTATTTGTTTCTG 60 90965789 90965808 TCGAGGCATTTAGCATAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053483.2 ENSRNOG00000059916 ENSRNOT00000081968 2 1 1 68 3 109814066 109814084 AGTCCTGCTGGGATTAGTG 59 109811959 109811977 AAGCAGAGACAAAGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 2 1 1 66 16 17139384 17139402 TTGGAGACAGTTCTGGGTG 59 17138135 17138153 GTTACAGTGTGCTACACGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 1 1 1 60 1 153456478 153456499 CAAGTGGAATTAGAAATCAGGG 57 153457375 153457393 AGCCAATTCAACCAAAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 1 1 1 78 16 19807200 19807218 ACCAGGTCTTACAGAAACG 57 19807026 19807044 AAGATACTGTGGAGGAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 1 1 1 143 16 51791833 51791851 CTACGCACCAATGTCTCTG 58 51790975 51790995 CGAACACTAAATGGAATCCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07025999.1 ENSRNOG00000060398 ENSRNOT00000092018 2 1 1 88 16 58493620 58493639 CATGGAGCAGAGATATGGTG 58 58494305 58494326 CCAGCTTTCTTAGATGATTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 2 1 1 68 19 5851824 5851842 ATCTCAGGAGGAGTCTCCT 58 5852488 5852509 CATGTAATTTGTCTGTACCAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 2 1 1 60 19 22770752 22770770 ACAGACTCACTGCTAACCC 59 22775623 22775641 CGTCCTCTGCTCTTAACGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC115255.2 ENSRNOG00000058203 ENSRNOT00000090374 2 1 1 71 1 274175055 274175073 CCAAAGGAAAGGCAAGCAG 60 274172640 274172658 ATGCTTATGCAGAAGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07041778.2 ENSRNOG00000052643 ENSRNOT00000085638 2 1 1 93 X 139471784 139471805 CTATTCCAAAGACATAGCACTG 57 139473993 139474012 GTCTTGGTGACTTACCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 3 1 1 61 X 155797945 155797964 AAGTACTTTGACCAAGCCAG 58 155796431 155796449 TCTGTGGACTCTTCATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 1 1 1 60 20 6394720 6394738 TTGTAGGGCAGATGGAGAC 59 6396007 6396025 CACAGTTTCCAGAGCTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 2 1 1 66 4 16953185 16953203 GATTCAGCCTAAGTCCTGC 58 16951451 16951471 ATAAACTTCCCTCCATTGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 2 1 1 63 8 84893249 84893267 AGAGCCCTATGAAAGGAGC 59 84886664 84886682 TCCTCTTCCTCTTCCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 2 1 1 117 4 63698700 63698718 TTTAACACTGAGCCACACC 58 63631492 63631511 GTAGAAGGGAGGTAGGTCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 2 1 2 82 7 131431131 131431149 AAGTCTGCTGAGACATGGG 59 131397413 131431086 AACTTCATGGGAGGTCTCAG 59 Novel Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 1 1 1 60 19 52061448 52061466 AGGCTTCAGTGAACTCCTG 59 52053580 52053598 GAGAGCAGTTACACCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071746.2 ENSRNOG00000055059 ENSRNOT00000091413 2 1 1 60 8 128962589 128962610 TCTGAAGAGCTTTGAGAATCAC 59 128964261 128964281 CTTTCTTGCTGTAAGGAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 1 1 1 98 2 119558769 119558787 GAAATGCCCAGCATACACC 59 119560978 119560999 TCCTGCAGAAATATCCTTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 3 1 1 78 2 206162762 206162780 TGCACCAAGAAGGATTTCC 58 206157106 206157124 TTTCCTTCTGGTCCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 2 2 2 82 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647893 211647913 TTTAACTGCTTCATGCCTGTC 59 Novel Rattus norvegicus 81 Mt-nd4l ENSRNOG00000031053 ENSRNOT00000044582 3 1 1 60 MT 10035 10056 TCCATAACCATCCCAATTACCA 59 10076 10095 CTAAACCTACTGCTGCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd4 ENSRNOG00000029707 ENSRNOT00000042928 2 1 1 60 MT 10524 10542 TCGAAGCCACTCTAATCCC 59 10566 10584 CGTTCTGTTTGGTTGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir30c-1 ENSRNOG00000035567 ENSRNOT00000053690 3 1 1 60 5 139699928 139699950 GTGTAAACATCCTACACTCTCAG 59 139699890 139699908 GAGTAAACAACCCTCTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0211.1 ENSRNOG00000050700 ENSRNOT00000074085 3 1 1 60 X 21033121 21033139 AACCTGAGAATCGTTGGAG 57 21033163 21033181 GTTACAGATGGTTCAGCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699,ENSRNOT00000080324 1 2 2 80 2 196494311 196494482 GACTACCTGCTGGAGTCTG 59 196494526 196494544 GGCGAAGACAATGAAGAGG 59 NA Rattus norvegicus 81 Tmem27 ENSRNOG00000003960 ENSRNOT00000005348 1 1 1 80 X 32139392 32148908 GGAACAGAAATTTCCCACGTC 60 32139332 32139351 TTTCAAAGGGTCTGTGACCA 60 NA Rattus norvegicus 81 Actrt1 ENSRNOG00000003456 ENSRNOT00000004591 3 1 1 60 X 133227866 133227886 TTCTGGACTCTGTAAAGTTGG 58 133227908 133227926 AGAGTTGATGACATGACGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 2 2 2 82 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395975 257395996 GATGTCAGTGACTGACATAGGT 60 NA Rattus norvegicus 81 LOC100910479 ENSRNOG00000048079 ENSRNOT00000073707 2 1 1 60 20 638415 638434 GACCACTTCACTATGCTACC 58 638374 638393 GCTATTCCTGCAAGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 2 3 3 80 11 38055775 38055794 TGCCTTTACAACGGTTTCTG 59 38055834 38057691 ATGTCTTCAAGTTTGGACTTGG 59 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 3 3 3 80 11 38046464 38051174 CTCAATTCAGAGCTCTTCTGG 59 38051216 38051234 GTGAGATGAGCTCCATGGT 59 NA Rattus norvegicus 81 LOC684822 ENSRNOG00000033199 ENSRNOT00000040365 3 1 1 61 8 3272029 3272048 CTGCGTATTGAACCCTTCTC 59 3271987 3272006 GAATCCTGTGGCTTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC171573 ENSRNOG00000008563 ENSRNOT00000011381 3 1 1 82 8 41444922 41444941 GAGAAAGGAAACTCCACCTG 58 41444424 41444880 AAGAGGATATCAACACCTTGAG 58 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181,ENSRNOT00000076134 2 2 2 87 3 37938599 37938618 CTGATGTGGGATATTGGTGG 58 37936936 37938552 CCACCACAACTATTACAAACTC 57 NA Rattus norvegicus 81 Hyls1 ENSRNOG00000012980 ENSRNOT00000017330 2 1 1 60 8 36764129 36764150 CACTTCATCAACAGTTTCAGAG 58 36764090 36764109 CTTCCTCTTCATTACTGGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6323 ENSRNOG00000048889 ENSRNOT00000074134 3 1 1 73 11 84827033 84827051 CTGTGAATGCAGTGAGTGC 60 84827088 84827106 AGAGATGGAGTTCCAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037166.1 ENSRNOG00000059740 ENSRNOT00000087609 3 1 1 60 X 14783512 14783531 CTACTTTGACCGTGATGACG 59 14783471 14783491 TGACTTGCTCAAGAAGAAACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3i-ps1 ENSRNOG00000055760 ENSRNOT00000081452 2 1 1 144 2 145937427 145937451 GAACATCATACTTTCCGAACAG 58 145937556 145937574 AGAACCTGTCCTCAAACTG 57 NA Rattus norvegicus 81 Nme6 ENSRNOG00000020721 ENSRNOT00000028125 3 1 1 81 8 117923728 117923747 CTCAGACTCTCCAACTCACG 60 117923791 117925336 TGTTGATGAACAGCCTCCA 59 NA Rattus norvegicus 81 Mir3597-1 ENSRNOG00000035551 ENSRNOT00000053674 2 1 1 60 2 187582840 187582861 TAGCTTTATGAAGACTCCACAC 58 187582801 187582821 GGGTTGGTTGTTATCTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 3 2 2 80 5 137259402 137259500 GATAAAGATTGCTCCAGGAGG 58 137259540 137259560 TAGTAGAGGTACATGACGACG 59 NA Rattus norvegicus 81 Bhlhb9 ENSRNOG00000003191 ENSRNOT00000049375 3 1 1 60 X 106391300 106391318 CTAGAACCAGCCACAAGTC 58 106391338 106391360 CCTATAACATTCTCTTCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962,ENSRNOT00000014820 1 2 2 80 15 38122146 38130863 TTTGGACGAATGAACCAACAG 60 38122086 38122106 AGAACAGGAACAGAACATGGA 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962,ENSRNOT00000014820 2 2 2 80 15 38130902 38130922 GTATTCTCTGCTGTATTGCCT 58 38122145 38130860 ACTGTTGGTTCATTCGTCC 58 NA Rattus norvegicus 81 Dcps ENSRNOG00000009993 ENSRNOT00000013763 2 1 1 80 8 36323963 36323983 CAGATCACTTCGAGATCTCAC 58 36322439 36323921 TTCAGGATGGCTTCTTGTC 58 NA Rattus norvegicus 81 Glrx ENSRNOG00000012183 ENSRNOT00000016372 3 1 1 82 2 2606258 2613225 GGAGCAAGAACAGTTCCTC 58 2613270 2613289 CCATTCTGTTGCATGGAGAG 59 NA Rattus norvegicus 81 Rhcg ENSRNOG00000015526 ENSRNOT00000021109 3 1 1 80 1 141336222 141336242 GCTCATTATGACCTTCTTCCA 58 141334480 141336181 GCATCCTTTGCCTCTATCAG 59 NA Rattus norvegicus 81 Hlcs ENSRNOG00000001686 ENSRNOT00000002291 3 1 1 80 11 34361540 34362979 TATATCCTCATTGGCTGTGGA 59 34361480 34361500 ATTGTGTTCTTCGATGAGGTC 59 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000031748,ENSRNOT00000090705 3 2 2 80 2 248738346 248738571 ATAATGAGAAGGCTGTTGAGG 58 248738286 248738305 GTGCTTCTTTACATCCTCGG 59 NA Rattus norvegicus 81 Kcnj6 ENSRNOG00000001658 ENSRNOT00000066940 1 1 2 86 11 35098840 35099369 GTTGACAAGACTGACAGCT 58 35098772 35098790 AACTTTGGCTGGTGAATGG 59 NA Rattus norvegicus 81 AABR07069837.1 ENSRNOG00000049187 ENSRNOT00000075103 2 1 1 80 8 41147484 41147502 GTTGACTTGCACAAGAACG 58 41146353 41147441 ACTTTCTGAGACCAGATGTG 57 NA Rattus norvegicus 81 Chaf1b ENSRNOG00000001692 ENSRNOT00000002299 3 1 1 80 11 34115948 34117506 AGTGACATTTCCTGGTCCA 59 34117549 34117568 CTCAAAGGTCACGAATGAGC 59 NA Rattus norvegicus 81 LOC100910163 ENSRNOG00000047977 ENSRNOT00000074449 1 1 1 60 16 72402047 72402066 AAACATAGACCAGGAGTCCC 59 72402089 72402107 CTCTGCCTTCTTGTCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr51 ENSRNOG00000015424 ENSRNOT00000020678 1 1 1 60 1 168006156 168006174 GTCTTCCTGCTCATCCCTC 60 168006197 168006216 TCTGCTTTGTCTTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102555453 ENSRNOG00000028993 ENSRNOT00000042736 2 1 1 60 X 1345841 1345859 AGATTGTCAACATTGCCCG 59 1345799 1345818 GTTCCAGAAAGTTCTCTGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 3 2 2 81 8 132730832 132730850 TATCTACTTGGTCCGTGGC 59 132729895 132730788 TAGCTGCTCCATCTTAGGTG 59 NA Rattus norvegicus 81 Ctgf ENSRNOG00000015036 ENSRNOT00000020528,ENSRNOT00000089196 1 2 2 86 1 21853792 21853810 GAAATGCTGTGAGGAGTGG 59 21853594 21853612 GTGTCTTCCAGTCGGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Rnf17 ENSRNOG00000008059 ENSRNOT00000010795 3 1 1 80 15 36727097 36727118 TCTATCCCATTCTGCTGTATCC 59 36727158 36728426 CATTCCCAACCGGTAAAGTC 59 NA Rattus norvegicus 81 H2afx ENSRNOG00000010386 ENSRNOT00000059715 3 1 1 211 8 48665921 48665940 CAAGAAGACGCGCATTATCC 60 48666114 48666132 CTCAGTACTCCTGAGAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpd1l ENSRNOG00000026455 ENSRNOT00000033976 1 1 1 80 8 122974179 122974198 TTCATTCACAAGATCTGCGA 58 122971932 122974138 ATCTATACCCTTGATGAGGGT 58 NA Rattus norvegicus 81 Gpd1l ENSRNOG00000026455 ENSRNOT00000033976 3 1 1 81 8 122974179 122974199 GTTCATTCACAAGATCTGCGA 59 122971932 122974139 ATCTATACCCTTGATGAGGGTG 59 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 3 2 2 80 1 83513496 83513712 CTGAAGAAATACAAGGGAGCC 59 83513754 83513772 GACAATGGAGCAGATGGTG 59 NA Rattus norvegicus 81 LOC688932 ENSRNOG00000030228 ENSRNOT00000041740 2 1 1 83 X 34296987 34297011 TCGATGATGCTGTTCAATCTG 59 34296924 34296942 ATTCGACTTGGACCTTGGG 60 NA Rattus norvegicus 81 AABR07054514.1 ENSRNOG00000052231 ENSRNOT00000071502 2 1 1 60 3 158847206 158847227 GCTTTGGTAAATAGCTCTATGG 57 158847247 158847266 CAGTCTGGTCTGTTAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr96 ENSRNOG00000015832 ENSRNOT00000021191 3 1 1 60 1 168489127 168489145 AGGCATCCCTGGTTATGAG 59 168489168 168489187 GTAGATGAGGCAGAATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11a ENSRNOG00000015003 ENSRNOT00000020229 3 1 1 83 1 141478604 141478622 GTCTAAGGCTGGCAAAGAG 58 141476160 141478557 AGTCTGAACCATTTACGGC 58 NA Rattus norvegicus 81 Olr1303 ENSRNOG00000046665 ENSRNOT00000071348 3 1 1 60 8 43208611 43208632 GTTCACTTAACGTTATTGTCCC 58 43208572 43208592 GCCATGATGAAGATGTAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f3 ENSRNOG00000029273 ENSRNOT00000050261 3 1 1 81 17 36400344 36400362 TCTACGACATCACCAACGT 59 36400404 36404695 TAACATAAGATCCACTGGACGT 59 NA Rattus norvegicus 81 Iqgap1 ENSRNOG00000012002 ENSRNOT00000018021 3 1 1 80 1 142551910 142552652 GCATTCAGTCACAGTGGAG 59 142551848 142551866 CGTCTTTATGGGAGTGCAG 58 NA Rattus norvegicus 81 Slc2a12 ENSRNOG00000011161 ENSRNOT00000015566 3 1 1 81 1 24018196 24018216 CTGACTTCTAGCATGAACTGG 59 24014580 24018155 ACGACAAGCCAATAAGATCAG 59 NA Rattus norvegicus 81 Ccp110 ENSRNOG00000027405 ENSRNOT00000037870 3 1 1 80 1 188420646 188422445 CTCCACTGCTTACCATTGAG 58 188422488 188422506 CCTGCTTTCTTGTTTGCAC 58 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 1 2 2 80 2 30314082 30319939 TAGACAAAGCCTTCCAGGA 58 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Tbc1d23 ENSRNOG00000001642 ENSRNOT00000002240 1 1 1 80 11 45455698 45455716 CAAGCCAGACATCAAGCAC 60 45455758 45456842 GTAACCAACAGATGACTGGGA 60 NA Rattus norvegicus 81 Olr1309 ENSRNOG00000050335 ENSRNOT00000043206 2 1 1 60 8 43355527 43355547 CCTAACTTCCCTCACTTTCCA 60 43355566 43355587 GAAATAATAGCCCACTTTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr347 ENSRNOG00000057869 ENSRNOT00000089953 2 1 1 60 1 229877675 229877697 GAAACCTGGGATTGATTCTACTG 59 229877715 229877735 ATATACATGGGACTGTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gemin8 ENSRNOG00000029038 ENSRNOT00000048155 1 1 1 64 X 29825388 29825406 AGATCCGTTGTTACCCACC 59 29817393 29825360 AAGTCCAAGTGGGAACTCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Tmco6 ENSRNOG00000017718 ENSRNOT00000038066 2 1 1 80 18 29583276 29583296 AGTTCTTCCTTCAGAAACAGC 59 29583335 29584581 AAGTAGGACTATTTGCAGTGAG 58 NA Rattus norvegicus 81 LOC100912580 ENSRNOG00000049807 ENSRNOT00000074733 1 1 1 60 3 158936803 158936823 GCTGAATTCTCACCTTCACAC 60 158936763 158936787 GTCTACAAAGGACAAGTTAAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr8 ENSRNOG00000045992 ENSRNOT00000073535 1 1 1 60 X 28539263 28539282 GAACCTTCCAGGGATCTCAG 60 28559570 28559588 TCAGAATCCACGACTGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr313 ENSRNOG00000029226 ENSRNOT00000043996 1 1 1 60 1 213427607 213427626 CTGTGTTCTGTGCCTATGTC 59 213427647 213427667 GAAACTTTGCTTCTTTCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2r1 ENSRNOG00000011367 ENSRNOT00000067609 2 1 1 82 1 184095574 184095592 TCCTGAGCGATTTCTGGAC 60 184094280 184095530 GACAGTGTCTTCTCCCTAGAG 59 NA Rattus norvegicus 81 Serpinb6b ENSRNOG00000016420 ENSRNOT00000059921 1 1 1 80 17 32771133 32771434 CATTGAACTGAGAATGGTGGA 58 32771073 32771093 CTTTCTTCCATCTTGTCCAGG 59 NA Rattus norvegicus 81 Rdh13 ENSRNOG00000027919 ENSRNOT00000031462 1 1 1 80 1 72957086 72957104 GTTATCGTGACAGGAGCCA 60 72957147 72958579 CAGAATGATGTTGCCTCCTC 59 NA Rattus norvegicus 81 LOC685505 ENSRNOG00000032860 ENSRNOT00000047929 1 1 1 60 9 65933116 65933137 CAATGATTTCTATGAGGAGCAC 57 65933156 65933176 GCAATTCCAGTTAATGTCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685505 ENSRNOG00000032860 ENSRNOT00000047929 3 1 1 60 9 65933120 65933139 GATTTCTATGAGGAGCACGG 58 65933159 65933180 ATGGGCAATTCCAGTTAATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab43 ENSRNOG00000037768 ENSRNOT00000013299 1 1 1 96 4 119697260 119697278 AGAGGAGCACCTTCTTGTC 59 119695469 119697201 TCTGACTTGTTCCCGATCAG 60 NA Rattus norvegicus 81 Mageb3 ENSRNOG00000038269 ENSRNOT00000044910 1 1 1 60 X 54843189 54843210 ACTAAATAAATGTCCCACAGCC 59 54843150 54843172 CTCTTAACTTCACTAGCCATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyw5 ENSRNOG00000010100 ENSRNOT00000013502 1 1 1 80 9 64083329 64083887 ACCCGAGGAAGGATATTGC 59 64083267 64083288 CTCTGAAGAACATTGGAAAGGT 59 NA Rattus norvegicus 81 Mir3578 ENSRNOG00000035497 ENSRNOT00000053620 1 1 1 60 6 133893763 133893782 AGCTGAGCATTGATACTGAG 58 133893722 133893740 ATTCGCTTAGCTGACTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3578 ENSRNOG00000035497 ENSRNOT00000053620 2 1 1 60 6 133893725 133893746 ATTATTCGAAGTCAGCTAAGCG 59 133893686 133893704 CTCTGCTGGTACTTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtfp1 ENSRNOG00000004640 ENSRNOT00000006160 3 1 1 82 14 84332540 84332558 CTGAATGTCCGCAAATGGA 59 84331015 84332494 TCTACCGACCTGTCAATGG 59 NA Rattus norvegicus 81 Rn60_X_0594.8 ENSRNOG00000051097 ENSRNOT00000076662 1 1 1 60 X 58595184 58595202 GCATCCCTACTGATGTTCC 58 58595142 58595160 GCAAAGCCTTCCTCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl3 ENSRNOG00000004016 ENSRNOT00000065814 1 1 1 80 X 27019899 27019922 ACTATAGAGATCCCTGAAGTTCTC 59 27019960 27020629 TTTCACTAACCGCTTTCTCC 58 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 3 1 3 105 2 189440049 189440213 ATAAACTCAAGGAGGCGGAG 60 189449999 189450017 TCTTTGGTGCACTTCAGCT 60 NA Rattus norvegicus 81 Olr92 ENSRNOG00000015811 ENSRNOT00000021169 2 1 1 60 1 168456062 168456081 CATGAGCCAATGTTTCTCCT 58 168456021 168456039 CTGTAACCAGGCACAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt8 ENSRNOG00000020245 ENSRNOT00000027454 2 1 1 80 1 215605726 215605747 GAAGCAACCCAAGGATAAAGAG 59 215605788 215606196 ACATCTGGTTGAACCAGGT 59 NA Rattus norvegicus 81 AABR07072463.1 ENSRNOG00000021843 ENSRNOT00000032631 2 1 1 65 15 41800256 41800274 CAAAGCTACATGGCCAAGG 59 41800303 41800350 AGCCTGGTTTAAACCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC688924 ENSRNOG00000037485 ENSRNOT00000056742 3 1 1 139 1 89150254 89150573 CTGTTCTCCCTGAAGACCC 59 89150674 89150694 ACTAAAGAGATAGAGCTGGCC 59 NA Rattus norvegicus 81 Dmbt1 ENSRNOG00000020560 ENSRNOT00000054910 2 1 1 80 1 201679760 201679779 CACAGTGTTACTCGAAGAGG 58 201679821 201680759 TGACAGACAAAGGAGATTGG 58 NA Rattus norvegicus 81 Zfp575 ENSRNOG00000024065 ENSRNOT00000035356 1 1 1 145 1 81448680 81449206 GAGACCAAAGTCTCCCACC 60 81448553 81448571 TTGGATGGGTACGAGAAGG 59 NA Rattus norvegicus 81 Zfp575 ENSRNOG00000024065 ENSRNOT00000035356 3 1 1 64 1 81448680 81449206 GAGACCAAAGTCTCCCACC 60 81448634 81448652 GGCACACTCCCAGATACAG 60 NA DesignRelaxed Rattus norvegicus 81 Psd2 ENSRNOG00000019177 ENSRNOT00000026112 3 1 1 80 18 28805144 28820600 TGCACGGACATAACATTGG 59 28820643 28820662 AGTCTTGTCCATCATTCAGC 58 NA Rattus norvegicus 81 Cybb ENSRNOG00000003622 ENSRNOT00000038994 1 1 1 80 X 14578363 14580258 ATCTTTGTCATTCTGGTGTGG 59 14580297 14580318 TTTAGGCTCATCGTCATAAACC 59 NA Rattus norvegicus 81 Cyb561a3 ENSRNOG00000020702 ENSRNOT00000028094 2 1 1 80 1 226634143 226635814 GTTCTGAAGGAGTTCTTGATCAG 59 226635854 226635872 CATTGATCCCAGGGATCCC 60 NA InUTR Rattus norvegicus 81 Bnip3l ENSRNOG00000009820 ENSRNOT00000014798 3 1 1 80 15 43647854 43647872 TCTGCAGAGTTCCTGAAGG 59 43646469 43647810 TCCGATATAGATGCCCAGC 59 NA Rattus norvegicus 81 Nr2e3 ENSRNOG00000050690 ENSRNOT00000073122 2 1 1 80 8 64797616 64797877 TCTTCAAACCTGAAACACGAG 59 64797556 64797574 GCTTAAGCATCACCTGGGA 60 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190,ENSRNOT00000010546 3 2 2 83 6 96165617 96165636 CTAACAAGGAGATGCTGTGC 59 96165190 96165572 GGTCATTCTGTAGACCGAGG 60 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849,ENSRNOT00000084023 3 2 2 80 2 196020132 196021420 ATCACTACCCAGGGATTCC 58 196021464 196021482 TACATTCAGCACGATCCCA 59 NA Rattus norvegicus 81 AC098125.2 ENSRNOG00000046407 ENSRNOT00000075607 1 1 1 60 1 229784082 229784105 CATCCTTCTCATCTATACCATCAC 59 229784045 229784065 GACAATTAGCAGGATCATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 2 2 3 80 5 22747113 22749238 GGCTAAAGTTAAAGAACCCACC 60 22747054 22747073 CTTCCCTCTTCAGTCTTGCT 60 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 2 2 2 82 18 28864784 28871685 CAACGGCAGAAAGAACTCAC 60 28864721 28864739 TGTTCTCAGCCTCACAGAC 59 NA Rattus norvegicus 81 Senp7 ENSRNOG00000001616 ENSRNOT00000044177 3 1 1 80 11 46885769 46885793 CATGTATTCTCATACTAGACTCCCT 59 46884838 46885733 CTACCTCCAAATACTCTCGCA 59 NA Rattus norvegicus 81 Serpini1 ENSRNOG00000010248 ENSRNOT00000013904 1 1 1 80 2 174107441 174107460 CCAAAGCTGTTCACAAGTCC 60 174107500 174109769 TAATTGCAATCATTCCTGAGGC 60 NA Rattus norvegicus 81 AABR07036187.1 ENSRNOG00000045833 ENSRNOT00000073223 1 1 1 60 12 35613298 35613319 ATCACCTATGAGAAAGATCCAG 57 35613340 35613358 CTTCCGCGTAATCATCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000088073,ENSRNOT00000020994 1 2 2 80 1 196958941 196958959 ATCGAACAACTTCCTGCAC 59 196959003 196960356 TAGACTTTGAATTCCGCCG 58 NA Rattus norvegicus 81 Ephb1 ENSRNOG00000007865 ENSRNOT00000010634 1 1 1 80 8 110392371 110392389 CTACGGGATTGTCATGTGG 58 110384414 110392330 GCATTGATGACATCTTGATTGG 59 NA Rattus norvegicus 81 Rab11fip2 ENSRNOG00000009523 ENSRNOT00000012734 2 1 1 82 1 281095119 281095137 GAAGTCTAGCACTGTAGGC 57 281094145 281095074 TGAGACTTCCACTTTCTGGA 58 NA Rattus norvegicus 81 Rn60_17_0530.1 ENSRNOG00000059319 ENSRNOT00000087008 2 1 1 60 17 52954207 52954226 CGAAGAGGAGGAAGACAGAG 59 52954249 52954267 CTGAGAACCATCAAACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb44 ENSRNOG00000038757 ENSRNOT00000059209 3 1 1 100 15 46236454 46237308 ATTGCCTGAAGGTTACTGTG 58 46237371 46237389 TCCAGCCTAGCTTACAACC 59 NA Rattus norvegicus 81 Arap1 ENSRNOG00000019555 ENSRNOT00000030037 3 1 1 80 1 166498783 166498806 CTTATATCTATCAGAAGCGATGGG 59 166498841 166499118 TAGAGTAGGCATCCTTGTTACTG 60 NA Rattus norvegicus 81 Zfp513 ENSRNOG00000005298 ENSRNOT00000050102 1 1 1 80 6 26538307 26538325 AGGAAGAGGAAGAGGAGGA 59 26538368 26539144 CCTGAGAGTCTCCTTCAGAG 59 NA Rattus norvegicus 81 LOC306766 ENSRNOG00000017133 ENSRNOT00000023125 1 1 1 80 17 10590307 10591299 TCTTGACAAGACAGAGGAAGG 60 10591341 10591359 TTGTCTGAGCTGTCAGTGG 60 NA Rattus norvegicus 81 Rn60_X_0586.1 ENSRNOG00000051324 ENSRNOT00000076188 2 1 1 60 X 57715402 57715422 GATGGAGGCTTATCTATCCCT 58 57715362 57715382 TGCTTTCAGAGACATAACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Commd2 ENSRNOG00000043386 ENSRNOT00000022778 2 1 1 81 2 147778086 147778104 GTAGCGACACTATCCAGCA 59 147777534 147778043 TCCAGTTCAGAAATCATGAGC 58 NA Rattus norvegicus 81 Clptm1l ENSRNOG00000016923 ENSRNOT00000023211 3 1 1 80 1 32285408 32286159 AAATACGATGCTCAGGCCA 60 32285346 32285364 CAGGAGTGAGTAGACAGCG 60 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 1 1 1 60 1 81501862 81501880 CAACGCCAAACTCAACCTC 60 81501904 81502214 ATACGCACTCTCATTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Erp27 ENSRNOG00000005787 ENSRNOT00000055691 2 1 1 80 4 170898939 170901841 AGTACAGCCCTATGATTGGAG 59 170898879 170898900 GGGAAGCCTTGTTCATTATCAG 60 NA Rattus norvegicus 81 Igfbp1 ENSRNOG00000058780 ENSRNOT00000077177 1 1 1 80 14 87449235 87450554 TTCTCAGCATGAAGAGGCA 59 87450597 87450616 AGCTGTTCCTCTGTCATCTC 59 NA Rattus norvegicus 81 Slc25a28 ENSRNOG00000016751 ENSRNOT00000022633 3 1 1 98 1 263422030 263423146 CCATATTGCCAATGGTGCA 59 263420850 263420868 TTGTACATCTGCATCCGCT 60 NA Rattus norvegicus 81 LOC100359656 ENSRNOG00000029090 ENSRNOT00000051511 3 1 1 60 X 77809040 77809061 GTAAGGAATGTTAGATGTGCCA 59 77809081 77809100 CGATACTTACAACAGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem154 ENSRNOG00000010866 ENSRNOT00000014433 1 1 1 80 2 183674673 183694306 AAGCCAGGGAAATGATGAG 58 183694350 183694368 CTTGTCGTCTCTTCCTCTG 57 NA Rattus norvegicus 81 Dspp ENSRNOG00000002168 ENSRNOT00000002943,ENSRNOT00000002946 3 2 2 95 14 6931924 6932095 CAGCACAGAATGAGTTGCA 59 6931847 6931866 TAGAGTGTACCTGCCTTCCT 60 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 1 2 3 68 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383830 78383848 GATTTACCCACCAGGAGGA 58 NA DesignRelaxed Rattus norvegicus 81 Map7d2 ENSRNOG00000005176 ENSRNOT00000045285 1 1 1 80 X 38409938 38409959 CTTGATGGGAAGTCAAACAGTC 60 38400809 38409900 CTCTTCTTTGGAAACAGGACTC 59 NA Rattus norvegicus 81 Vps4b ENSRNOG00000002705 ENSRNOT00000003715 1 1 1 80 13 26826651 26828164 GTTTCCATGTGGGATATGCT 58 26826590 26826611 CTTCTTCAGTTTCAACAAGTCC 58 NA Rattus norvegicus 81 Vps4b ENSRNOG00000002705 ENSRNOT00000003715 2 1 1 80 13 26836652 26841590 GAATCAACTTCAAGGTGCCA 59 26836591 26836609 TCTTTGGCTCCTTCCAGAC 59 NA Rattus norvegicus 81 Rell2 ENSRNOG00000019575 ENSRNOT00000026526 1 1 1 80 18 31096527 31096969 GTACAGCTCTCCAGTGTGG 60 31097013 31097031 AGAGCCAAGGTGTACTGTG 59 NA Rattus norvegicus 81 Nanos3 ENSRNOG00000031593 ENSRNOT00000050214 1 1 1 206 19 25287883 25287901 AAAGACACAGAATGCTGGC 59 25285006 25285024 TAAGCAAGGTCCAGTCTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir449a ENSRNOG00000035622 ENSRNOT00000053745 2 1 1 60 2 44897615 44897634 TTGGCAGTGTATTGTTAGCT 58 44897657 44897675 GAGCAGTTGCATGTTAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 1 2 3 80 5 25580002 25583507 CCCAGACGAATTGGAATCC 58 25579940 25579958 AAACAGTTGAGTTGGTGCT 58 NA Rattus norvegicus 81 Rn60_X_0616.1 ENSRNOG00000038235 ENSRNOT00000041226 2 1 1 60 X 60953718 60953739 ATGTTCCATCATAAGACCTTCC 58 60953760 60953778 ACTCCCTTTCGCTCATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016166.1 ENSRNOG00000050592 ENSRNOT00000070839 2 1 1 82 14 94776662 94776680 GACAGCGACATCTTAACGG 59 94776726 94776981 AGTACACGAAAGGCTTTGC 59 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091,ENSRNOT00000012295 3 2 2 80 8 63423929 63433253 TGAAGTGAAAGCTGCTCCT 59 63433294 63433315 CAATACATCATAGCATCCTGCC 59 NA Rattus norvegicus 81 Top1 ENSRNOG00000047611 ENSRNOT00000086260 3 1 3 80 3 156699453 156707473 TTCACGAATCAAGGGTGAG 58 156707517 156707535 TTTCGGATCTTGTCCACAC 58 NA Rattus norvegicus 81 Olr714 ENSRNOG00000049728 ENSRNOT00000051799 3 1 1 60 3 78361538 78361556 GACACCTACCTGATTGGTC 57 78361496 78361516 AGATGACTATACACATGGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000086426,ENSRNOT00000090139 2 3 3 80 8 90936510 90937400 ACAAGCTGAAGGAGAAGGA 58 90936448 90936468 CTTTCTTTGGAGAGGACTTGG 59 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000091240,ENSRNOT00000083362 3 2 3 60 X 62363956 62363976 AGCAATCAGTACCAGGAAGAG 60 62363998 62364016 TTGGCGATTTACTCTTGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem150c ENSRNOG00000002258 ENSRNOT00000003076 1 1 1 80 14 11158091 11158109 AATATCAGCGGTTTGGTGG 58 11158152 11160650 TTCATCATTTGTGAGCTGGA 58 NA Rattus norvegicus 81 Elavl3 ENSRNOG00000013752 ENSRNOT00000018416 2 1 1 80 8 23048206 23048433 GATAAGATCACAGGACAGAGC 58 23048146 23048165 AGTGTTGATGGCTTTGTCTG 59 NA Rattus norvegicus 81 Dpysl5 ENSRNOG00000008996 ENSRNOT00000012273 3 1 1 80 6 26959889 26959909 GAATTGAGATCAGCCATCCAG 59 26955675 26957338 GACAGTGAGTCCTGTTTGC 59 NA Rattus norvegicus 81 Gcdh ENSRNOG00000003307 ENSRNOT00000004570 1 1 1 80 19 26006263 26006560 TCGGTCAAATCCTCTCGTC 59 26006201 26006219 GAGTTTCTCATCGGCAGTC 58 NA Rattus norvegicus 81 Magee2 ENSRNOG00000021400 ENSRNOT00000037575 3 1 1 60 X 75794604 75794622 CTCTACAGAAAGCAGCCAC 58 75794646 75794664 CCTCATCTTCCACAGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1323 ENSRNOG00000053357 ENSRNOT00000079430 1 1 1 60 8 43676316 43676335 TATGTTGCCATCTGTAACCC 58 43676357 43676376 AAGACCACACTTGATAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgir ENSRNOG00000016756 ENSRNOT00000022461 1 1 1 80 1 78834320 78834339 GTTTACCACCTGATTCTGCT 58 78834382 78835424 CGTGAATCCTCTGATCGTG 58 NA Rattus norvegicus 81 Olr409 ENSRNOG00000048611 ENSRNOT00000010341 3 1 1 60 3 16312111 16312130 CTTCTGTGACCTGTCTACCT 59 16312149 16312171 CAGCTCATTGATGGATGTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr179 ENSRNOG00000048628 ENSRNOT00000039989 1 1 1 60 1 169845074 169845098 CCCTCTCCAATATAACACAATTCTC 60 169845038 169845057 TCCAACACCAGCAATAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmt1 ENSRNOG00000002989 ENSRNOT00000004046 3 1 1 80 10 91149233 91150397 AGAGTTTCTCTTGTGGGCT 59 91150441 91150459 TTCCGACTTGAGACCACTC 59 NA Rattus norvegicus 81 Zpld1 ENSRNOG00000039517 ENSRNOT00000060577 3 1 1 80 11 47947187 47947207 ATCCCGAGTATAGGATTACCC 58 47947248 47948640 TACATTCCATCTGCCATCCA 59 NA Rattus norvegicus 81 Jade3 ENSRNOG00000039837 ENSRNOT00000061140 1 1 1 80 X 1929470 1929489 TAAATGGGCTCATGTCAGCT 60 1915409 1920899 GTAACAGGTTTCCTTGATGATGG 60 NA Rattus norvegicus 81 AABR07019903.1 ENSRNOG00000040105 ENSRNOT00000061683 1 1 1 80 13 6712700 6712719 CTTTGGACTACTGAAGGCTC 58 6712597 6712659 GTCTGTTTCCTTGAATTTCCG 58 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438,ENSRNOT00000067530 3 2 2 85 1 71253365 71253386 GATCTCATTACTGGAACAAGGA 58 71253431 71260669 AAACATACTCCCAATCAGGG 57 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 2 2 2 80 17 18415768 18417037 TTAGCATCACAACGTCCAC 58 18415706 18415724 GCAATGTGATGAAAGCAGG 58 NA Rattus norvegicus 81 Zbtb7b ENSRNOG00000020640 ENSRNOT00000028010 2 1 1 80 2 188706110 188706129 TATGAGGACCCATACTGGTG 58 188705680 188706069 ATCTTCAGCTTGTCATTCCTG 58 NA Rattus norvegicus 81 Mrps23 ENSRNOG00000010363 ENSRNOT00000013771 3 1 1 101 10 75535522 75535934 CAAAGACTGTCAATGTGAGACTC 60 75535995 75536013 TCTCTGGCTCCTGTTTCAC 59 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000042903 ENSRNOT00000066084 3 1 1 84 8 87210401 87212441 GCTGTTTCAGGAGGATAATGG 59 87210337 87210355 CAGAAGCATTGTGGCTCTG 59 NA Rattus norvegicus 81 Olr1169 ENSRNOG00000047916 ENSRNOT00000071855 1 1 1 60 8 20358645 20358664 CCATTTGTCACCCTCTACAC 58 20358685 20358705 ACCAAACATCTACATAGGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000013114,ENSRNOT00000065555 2 2 2 60 10 84982902 84982923 ATCTTAAAGAGCGTTCCTTTCC 59 84983678 84983698 TGAGAATGGTGTCATCAATGC 59 NA DesignNoJunction Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 1 1 4 131 6 52663180 52667424 GTTCTGCTCATTTGGGAGTC 59 52667517 52668874 CTTCTGTGCTTCCACATCTG 59 NA Rattus norvegicus 81 Clec4e ENSRNOG00000061394 ENSRNOT00000078725 3 1 1 81 4 156273105 156273123 TGGGCAGAAGAAGTTACAG 57 156272970 156273061 GCAATTCTTGACTGAACCTG 57 NA Rattus norvegicus 81 AC141516.3 ENSRNOG00000061814 ENSRNOT00000083415 2 1 1 80 11 87276611 87276963 GAAGTGGCATTCAAAGGCTC 60 87277004 87277024 GTTGTCATTCTCAGACATGGC 60 NA Rattus norvegicus 81 Il12b ENSRNOG00000004380 ENSRNOT00000005898 1 1 1 80 10 30045801 30045819 TCCCTCAAGTTCTTCGTCC 59 30045863 30047382 CGCACCTTTCTGGTTACAC 59 NA Rattus norvegicus 81 Ube2b ENSRNOG00000005064 ENSRNOT00000016742 2 1 1 83 10 37452186 37454388 TTCAAGCGATTGCAAGAGG 59 37452121 37452139 TATAACTGCGTTCCACTGC 58 NA Rattus norvegicus 81 Pabpc1l ENSRNOG00000012750 ENSRNOT00000055172 3 1 1 80 3 160419489 160419509 CATCTATGTGAAGAACCTGCG 59 160419550 160419747 CTCTGCGTCTTTCCAAACTG 60 NA Rattus norvegicus 81 Gins1 ENSRNOG00000008091 ENSRNOT00000010955 1 1 1 80 3 146702662 146712144 CATGTCTGCTGAAGAAGTGG 59 146712187 146712205 TCATCTCCTCCAAGTGACC 58 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 2 2 2 80 10 91017976 91018280 TTACCTGGAGGTGTATAACGAG 59 91017917 91017935 TTATCAGGGTCCTCTCGGA 59 NA Rattus norvegicus 81 Cage1 ENSRNOG00000024111 ENSRNOT00000038349 3 1 1 80 17 27459104 27459125 AAATGAGTCTGTACACATGTCC 59 27459163 27467231 TAATTCCCAAGGTTGATGTCAC 59 NA Rattus norvegicus 81 Arl6 ENSRNOG00000001689 ENSRNOT00000002293 2 1 1 80 11 42875531 42875552 CAGTGACTTCTGTGAAAGTGTC 60 42875590 42878986 CATCACTAGCACAAATATGCCA 59 NA Rattus norvegicus 81 Rln1 ENSRNOG00000060867 ENSRNOT00000088193 2 1 1 137 1 247486052 247486070 CCAAGTCATTCAGGTGTGC 59 247483824 247485951 GATGGCACAACTTCTGCAG 60 NA Rattus norvegicus 81 LOC103693060 ENSRNOG00000052550 ENSRNOT00000088406 2 1 1 60 8 43496731 43496751 TCTCTTCAGTGTTTGTGTCTC 58 43496691 43496710 TGAACGGATTCTCAGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actbl2 ENSRNOG00000043292 ENSRNOT00000065528 1 1 1 60 2 42829728 42829747 CTTGACCCTGAAGTATCCCA 59 42829770 42829788 CTTCTCCATGTCATCCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actbl2 ENSRNOG00000043292 ENSRNOT00000065528 2 1 1 60 2 42829729 42829747 TTGACCCTGAAGTATCCCA 58 42829771 42829789 TCTTCTCCATGTCATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gsx1 ENSRNOG00000000952 ENSRNOT00000001260 1 1 1 124 12 9606761 9606779 GTTTCACTGCATCTCCGTG 59 9606145 9606163 AGAGGTACATGTTGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Prune2 ENSRNOG00000015088 ENSRNOT00000054794 2 1 1 80 1 236709563 236709582 TAATTGGAGAGCAGGAGCAG 60 236703106 236709526 CATAGTATCCTCCATGAGAAATGAC 59 NA Rattus norvegicus 81 Ripk1 ENSRNOG00000017787 ENSRNOT00000023962 2 1 1 80 17 31560579 31560600 CGAAGGTGTAATACACAAGGAC 59 31558745 31560542 CCAAGATCGGCTATCTTAATGTG 60 NA Rattus norvegicus 81 Vom1r90 ENSRNOG00000058136 ENSRNOT00000083168 2 1 1 80 4 121676553 121679168 AGTCACTCTGTTGTCTACTTACC 60 121676495 121676516 TTGTCAACAACTCCATACAGTG 59 NA InUTR Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 1 2 2 80 2 123271338 123271356 GCTGGTGTGAAAGTAGCAG 59 123271397 123272311 TCCACCTTCTTTCCTAACTCTC 59 NA Rattus norvegicus 81 Olr1316 ENSRNOG00000057118 ENSRNOT00000087263 1 1 1 60 8 43567480 43567498 TGAGAGCAGATTCAAAGCC 58 43567522 43567540 GAAGACAGCCACAGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wee1 ENSRNOG00000010017 ENSRNOT00000013362 1 1 1 80 1 174768597 174770224 CTCCCAAGAGTTTGCTTTCC 59 174770263 174770285 TGTCCATGAATAGAGAACTACCC 60 NA Rattus norvegicus 81 Dcst1 ENSRNOG00000020621 ENSRNOT00000027986 1 1 1 80 2 188676161 188676329 AGATGCGCAATGTGATAAGG 59 188676100 188676118 CCCAGTCGATTGCAAACAG 60 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000061158 1 1 2 84 15 18411108 18411127 GACATCGAGGGACTCATGG 60 18411175 18411193 GGTTTAGCAGCTTCTTGGG 59 NA Rattus norvegicus 81 Plk3 ENSRNOG00000018484 ENSRNOT00000025197 1 1 1 80 5 135999634 135999652 GTCAGCTTGGTAGAGACAG 57 135999436 135999592 ACCTTCTTCAAATCCATCTCC 58 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 1 1 2 80 10 90348248 90348266 ACCGATGAAGACAGTTGGT 59 90348310 90348434 CAGGTATCCCTTCTGAGCG 60 NA Rattus norvegicus 81 Ripk2 ENSRNOG00000009389 ENSRNOT00000012963 2 1 1 81 5 29843537 29843556 TAGAAACGCTGGTTCTCCTG 60 29841263 29843493 GTCTTGAGGTCCTCCATGG 60 NA Rattus norvegicus 81 Ceacam19 ENSRNOG00000043088 ENSRNOT00000045073 2 1 1 80 1 80804898 80804917 TTATGTGGCATTGCATACCT 58 80804655 80804855 CTCTGTGGCTGTATTCCTG 58 NA Rattus norvegicus 81 Mir222 ENSRNOG00000035581 ENSRNOT00000053704 2 1 1 60 X 3683948 3683966 AGCCAGTGTAGATCCTGTC 59 3683990 3684008 CATCAGAGACCCAGTAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppl ENSRNOG00000002930 ENSRNOT00000004026 1 1 1 80 10 10683841 10683859 TAGCAAGCATGGAACAAGG 58 10683901 10684589 CAAGCTCATAGTCCTTCACTG 59 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672,ENSRNOT00000079864 1 2 2 80 6 1675083 1681739 TCCTTGAAGGATGTCTCCG 59 1681783 1681801 GTGAAGAAAGGCCTCTTCC 58 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000036654,ENSRNOT00000086418 3 5 6 106 4 157545529 157545548 CACATCCGTATCCATTCAGG 58 157545617 157546299 ATCTTGGAGTGAATCCGGG 59 NA Rattus norvegicus 81 Cry1 ENSRNOG00000006622 ENSRNOT00000009124 1 1 1 80 7 24632310 24632328 ACTGCTCTCAAGGAAGTGG 59 24632370 24632486 AGCTTCTTCCTTGCTTTAGTG 59 NA Rattus norvegicus 81 Zwilch ENSRNOG00000009303 ENSRNOT00000012404 2 1 1 80 8 69114181 69114205 CTGCTATTTCTGATCTTTCTACTGG 60 69112542 69114144 GTCCAATTAGCTGCTTGCTC 60 NA Rattus norvegicus 81 RGD1563917 ENSRNOG00000017273 ENSRNOT00000029635 2 1 1 80 9 92764471 92764492 GTTCTGTTTAACAGAGTGAACC 58 92762127 92764430 GTCCTGTAGCTCAGTTTCC 58 NA Rattus norvegicus 81 LOC100909783 ENSRNOG00000050781 ENSRNOT00000071380 1 1 1 68 3 9403931 9403949 ACATCGGAGCCAGAATGAG 60 9403981 9403999 GTGGACTTTGAACTGAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca8 ENSRNOG00000004040 ENSRNOT00000005489 1 1 1 80 10 98273771 98273791 TCCATGACGACTTTGAATGAG 59 98264498 98273730 TCCCACTATGTCAACCTCTG 59 NA Rattus norvegicus 81 Uqcrq ENSRNOG00000048174 ENSRNOT00000073964 3 1 1 81 10 38782195 38782213 ATTTCAGCAAAGGCATCCC 59 38780338 38782151 TAGAACAGTACAAATGGCGG 58 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 1 1 1 66 7 26141420 26144307 CCTGCGAGCTTAATAGGGT 59 26141372 26141390 TCGTGTTGAATCAGGAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_15_0100.1 ENSRNOG00000051054 ENSRNOT00000076077 3 1 1 60 15 5652260 5652280 TTCACAGATTCCAGAAGACCA 59 5652299 5652320 GAAAGACCCAAGAAATCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr4 ENSRNOG00000010315 ENSRNOT00000013705 1 1 1 60 8 122531261 122531280 CCTGGAGATCAATGTCTTGG 58 122531220 122531242 GGAATAGCAGAACAACATGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbln1 ENSRNOG00000000010 ENSRNOT00000000011 1 1 1 86 19 20607760 20607945 ACTTCGACCAGGTACTAGTG 59 20607994 20608012 AACTGTAGATGCCTTTGCG 59 NA Rattus norvegicus 81 LOC100910667 ENSRNOG00000049512 ENSRNOT00000072050 2 1 1 60 8 43082320 43082341 GTTCACTTAACGTTATTGTCCC 58 43082281 43082300 GCCATGATGAAGATGTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem159 ENSRNOG00000048250 ENSRNOT00000075003 2 1 1 80 1 189873047 189873065 CCAGAGACTTACAGGAGCT 58 189873108 189883215 TAAAGGCAACCACCTTTGAG 58 NA Rattus norvegicus 81 Fntb ENSRNOG00000007660 ENSRNOT00000010588 1 1 1 80 6 99927135 99927156 CAGTACTTGTACTCCCTAAAGC 58 99927196 99935687 GTACGCACTTCTTACATCCA 58 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291,ENSRNOT00000011770 1 2 2 80 4 174733331 174733349 GCTGAGTAGTATCCGGGAG 59 174733391 174734173 AGAATTTCATTCTTCGGGCTG 59 NA Rattus norvegicus 81 Gli2 ENSRNOG00000007261 ENSRNOT00000009963 3 1 1 80 13 34861028 34861047 ATTCTAATGCAAAGTGGCGG 59 34851182 34860985 GGAGAATCGTGATGCATCC 59 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048445 ENSRNOT00000074937 3 1 1 60 2 115125993 115126013 TATTGATCTCTGCCATTCCAC 58 115126035 115126053 CTCTGCCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp1 ENSRNOG00000001203 ENSRNOT00000001597 3 1 1 81 20 10989916 10989935 TAAGTAGGGCTGACCTTGAG 59 10989979 10990704 TCGTAGTCAAACTGGAGGA 58 NA Rattus norvegicus 81 Nme2 ENSRNOG00000002671 ENSRNOT00000003611 2 1 1 156 10 81650958 81650976 GTACATGAACTCAGGGCCT 59 81648437 81649999 GTGAATGATGTTCCTGCCA 58 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000065899,ENSRNOT00000006249 3 2 2 84 7 28682811 28684140 GTCTATGTTTCTGATGGCCAC 59 28682747 28682765 CAGAGGATCTGATGGTGGG 59 NA Rattus norvegicus 81 AABR07043288.1 ENSRNOG00000057732 ENSRNOT00000074693 1 1 1 80 19 27106830 27108735 GCTCAACAACGTAATGAAGTC 58 27108775 27108795 AGGCTGAATAGTAAAGGTCTG 57 NA Rattus norvegicus 81 Jak2 ENSRNOG00000059968 ENSRNOT00000087011 1 1 1 80 1 247448064 247448222 CTGGACTCTCAAAGAAAGCTG 59 247448264 247448282 AAGGTTTGCCAACTCTGTC 58 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 2 2 2 85 3 123690557 123693735 TAGTCAAGGTAGGCTTCCT 57 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108,ENSRNOT00000068493 3 2 2 81 10 56640487 56640505 GTGTACCTAAAGGTGGCCA 59 56640547 56647334 GAGAATACGAGGTTGTGATGTC 59 NA Rattus norvegicus 81 Rn60_3_0729.2 ENSRNOG00000055145 ENSRNOT00000077283 2 1 1 60 3 66296066 66296084 GCCTACACTTCTTCAAGCC 59 66296107 66296126 ACTATACTGCTGACTGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd3 ENSRNOG00000060806 ENSRNOT00000089057 3 1 1 80 11 61855504 61873988 GTGTACTTGGAGGTGACAG 58 61855442 61855460 CATCATGACATCCAGGGTG 58 NA Rattus norvegicus 81 RGD1563242 ENSRNOG00000022273 ENSRNOT00000030491 2 1 1 87 1 236496785 236500462 AGAAGTCCATGGAAACCCA 59 236496716 236496734 CTGAGGTAGCCAACAATGG 58 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000050696,ENSRNOT00000084304 1 2 2 80 17 15978074 15978093 AAGACAATGGAGCGATAGAG 57 15978134 15985513 CGGAATCAATCATTTCTTGGG 58 NA Rattus norvegicus 81 LOC100360397 ENSRNOG00000011304 ENSRNOT00000015016 1 1 1 114 1 248647924 248647942 TTCTTCCTTCACCAGCGAG 60 248648017 248649441 TTAGTTTCATCTGGCTTCAGGA 60 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000037426 ENSRNOT00000056632 1 1 1 125 12 52672147 52672511 CCTGACAGAGAAGATCAGGG 59 52672684 52672702 GTGAATCTGTCGAACACGC 60 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000091442 3 1 2 80 5 154870213 154897624 AGTGCTCTGTAATGTTCAAGAG 59 154897665 154897683 CTGTTCCTGACTGTGACAG 58 NA InUTR Rattus norvegicus 81 Gzf1 ENSRNOG00000004735 ENSRNOT00000006287 2 1 1 80 3 143007498 143009949 CACCTGAGAGTTCATACAGG 58 143009991 143010010 AATCAGCATGTGGTTCTGAG 58 NA Rattus norvegicus 81 Olr767 ENSRNOG00000045977 ENSRNOT00000047051 1 1 1 60 3 102773651 102773672 GTCATCCTGATCTTAGTAACCA 57 102773612 102773631 CCAACAAGAAGTACATGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acot9 ENSRNOG00000003782 ENSRNOT00000005033 1 1 1 80 X 43562249 43575316 AGCTTAGGAGTTCTTGTTTGC 59 43562189 43562212 CAGGACTGTAACGATTGATAATGG 60 NA Rattus norvegicus 81 Gpld1 ENSRNOG00000017702 ENSRNOT00000024196 2 1 1 80 17 42094650 42095988 CGGAACGACAAAGAGTCAC 59 42094588 42094609 GTATCCAAACCATGAGAAGTCC 59 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000083381 3 1 2 136 15 45712980 45718134 GAAGGCTTGCATGTCATCC 59 45721100 45746775 CACAGAAAGCTCACTGCTG 59 NA InUTR Rattus norvegicus 81 Fbxl12 ENSRNOG00000020368 ENSRNOT00000068308 3 1 1 145 8 21660832 21660851 GAAGAGGCTAGTGGATGACC 60 21657984 21658002 CAGAGAATAGGTAGCCGCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sh3bp4 ENSRNOG00000019316 ENSRNOT00000026312 1 1 1 80 9 96271689 96277405 TAATGATGTCAAAGTGCCTTCC 59 96277446 96277464 GCAATCACTTCCTTTGCGT 60 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894,ENSRNOT00000073048 2 2 2 80 9 10165938 10165957 GCTGAGACCTCAGAAATGGA 60 10165376 10165895 CAAGTAGCCCTGGATCTGG 60 NA Rattus norvegicus 81 Card11 ENSRNOG00000024277 ENSRNOT00000051382 2 1 1 80 12 15831967 15831988 CTTTCTATATCCGCCTGAACCT 60 15832031 15832052 CCACCACATTCATCTTCATGG 59 NA Rattus norvegicus 81 Defb43 ENSRNOG00000038759 ENSRNOT00000059212 3 1 1 82 15 46196814 46201120 CCATACTTCCTCTGGCCAG 60 46201166 46201184 GGCTTTGCACTTCATCCTG 60 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 2 2 2 80 1 192026237 192027054 ATTCACTCCATTACAGGTCTC 57 192027095 192027114 TCTCAACGTCTTGTCTTCAG 58 NA Rattus norvegicus 81 Bmyc ENSRNOG00000042556 ENSRNOT00000064358 2 1 1 82 3 2916943 2916961 CTTCATGTGCGACGATGAG 59 2917006 2917025 ATTTCTTCCAGATGTCCTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000000995 1 1 2 80 20 1878095 1878117 CATATAAGCAGACATGAGGACTC 59 1876757 1878055 CGAATGGACAACACAGACG 59 NA InUTR Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956,ENSRNOT00000065753 1 2 2 80 7 145088844 145089205 GCTTAGTGACATCATTCAGAACC 60 145089241 145089263 GATAGCGTACTAACAAAGGAGGA 60 NA Rattus norvegicus 81 Hist1h2bg ENSRNOG00000021198 ENSRNOT00000028779 2 1 1 154 17 43688959 43688977 ATTACAACAAGCGCTCGAC 59 43680385 43688841 GGTCTACTCCTCTTGGCAC 60 NA InUTR Rattus norvegicus 81 AABR07052762.1 ENSRNOG00000048599 ENSRNOT00000071292 1 1 1 80 3 74318857 74318875 ATCGTTGCTTCCTATGCTG 58 74318919 74318940 ATTGGACTGGAACAACAGG 58 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162,ENSRNOT00000084505 2 2 2 81 15 39809384 39809402 AGATTGGTACACGGTGTCC 59 39809445 39819860 GCTTCATAGCCTTTGAGAAGC 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000004252 ENSRNOT00000005786 3 1 1 80 6 10234095 10234114 CCTCTCCAAACTCTTCAAGC 59 10234154 10236445 CAGTAAGTGTTAATCTGGCCTG 59 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336,ENSRNOT00000020717 2 2 2 80 2 187090660 187091313 GCTCATAGAGATTCACAATTCCTG 60 187091348 187091370 TCACTGATGTCTCTGATAATGGG 60 NA Rattus norvegicus 81 S1pr4 ENSRNOG00000005370 ENSRNOT00000007117 2 1 1 60 7 11078405 11078425 CTCTACTCCAAGGGCTATGTG 60 11078446 11078465 TAGTCACTAGGATTAGGGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcr5 ENSRNOG00000012430 ENSRNOT00000016580 2 1 1 80 8 48838214 48850452 TGGATGAGCTGTACAAGGA 58 48838152 48838174 CTGTAGAACAGAAGATACTGTCC 58 NA Rattus norvegicus 81 LOC689899 ENSRNOG00000030614 ENSRNOT00000040647 2 1 1 60 14 24129616 24129634 GCAAAGAAGGAAGCTCCTG 59 24129658 24129676 TAGCTTTCAAGGCCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3545 ENSRNOG00000035489 ENSRNOT00000053612 2 1 1 66 6 136705012 136705035 GTCTAGTGGTCCTAAACATTTCAC 60 136704969 136704988 GGTCCAGTGGTTCTTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyr ENSRNOG00000016421 ENSRNOT00000021971 3 1 1 80 1 151097513 151097534 GTTTGACCCAGTATGAATCTGG 59 151076301 151097472 GACTGGCAAATCCTTCCAG 59 NA Rattus norvegicus 81 Kdelr2 ENSRNOG00000001083 ENSRNOT00000001438 2 1 1 80 12 13197292 13197311 TGGAGTTTCTTGTGGTTCCT 59 13195893 13197251 AGGTCCACAAGATCTCAAGAG 59 NA Rattus norvegicus 81 Gsto1 ENSRNOG00000028746 ENSRNOT00000077011 1 1 2 61 1 267607698 267607716 AGGTTCTGTCCCTTTGCTC 60 267607741 267608849 AATCGTCGGATTCCCTTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC500300 ENSRNOG00000023465 ENSRNOT00000018133 2 1 1 80 4 148782616 148783455 CTGCTGACTTACAGCAATGAG 59 148783497 148783515 AGCTCCTCTGAAGTTTCCC 59 NA InUTR Rattus norvegicus 81 Jrkl ENSRNOG00000047133 ENSRNOT00000072420 1 1 1 60 8 11887123 11887142 TTGCACAAACTTAAGCTCTG 57 11887082 11887100 TTGACTTGAAGGAACGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcam ENSRNOG00000029399 ENSRNOT00000045574 3 1 1 81 1 80676871 80677046 GCGAGGAGATACTACTCCAG 59 80676809 80676827 GCTGGTGACTTTCAAGGTC 59 NA Rattus norvegicus 81 AABR07069676.1 ENSRNOG00000047150 ENSRNOT00000072224 2 1 1 80 8 37449414 37450255 TCTCCCTTCAAGCTTTGCA 60 37449352 37449373 GGCATATAAGTCTTCCAGTCAC 59 NA Rattus norvegicus 81 LOC100909989 ENSRNOG00000031423 ENSRNOT00000047107 2 1 1 60 8 42651045 42651066 TTGTGGTCTTTGTTCTAGTTGG 59 42651087 42651105 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad50 ENSRNOG00000033065 ENSRNOT00000063772 2 1 1 80 10 39031089 39031107 TACAGTGATGCCCGAAGAG 59 39030299 39031046 TTTAGCTCCATCTGGAACCT 59 NA Rattus norvegicus 81 Arhgap5 ENSRNOG00000004696 ENSRNOT00000088378,ENSRNOT00000041373 3 2 2 60 6 73361028 73361046 CCCTACAACAACTACCCAG 57 73361068 73361088 TTGGACTATATGGAGGTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esyt3 ENSRNOG00000022704 ENSRNOT00000017658 2 1 1 80 8 107562856 107562874 CCTTGAACAGTGCTTCCAG 59 107561748 107562812 ACACGTAAGAACCGAAGCA 60 NA Rattus norvegicus 81 Mettl1 ENSRNOG00000047895 ENSRNOT00000075544 1 1 1 80 7 70330009 70331283 CTTGTTAGTGGCACTGTCAC 59 70331325 70331344 ACATAGTCGGACACCTTCAC 60 NA Rattus norvegicus 81 Pus3 ENSRNOG00000012994 ENSRNOT00000017648 2 1 1 80 8 36767980 36767998 AGGAATGGAGAAGCCAGAG 59 36768042 36768455 ACAGCCATGCTATATTGCG 59 NA Rattus norvegicus 81 RGD1563383 ENSRNOG00000048925 ENSRNOT00000072026 2 1 1 60 X 49530119 49530137 AGATGGAATGACCTGCCTC 59 49530077 49530098 CAGGGTATAAGATGAAGTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Paqr7 ENSRNOG00000022054 ENSRNOT00000022713 1 1 1 80 5 152708812 152708831 CTCTTTATCTGCGACTCCAG 58 152708872 152711609 CATCCATATTCTAGGCCTGTG 58 NA InUTR Rattus norvegicus 81 Rwdd2a ENSRNOG00000009599 ENSRNOT00000012864 1 1 1 93 8 94244342 94244361 ATAAAGAGGTACCTGGACGG 59 94244417 94245459 CAATTGTCACCTTGGGCTC 59 NA Rattus norvegicus 81 Olr1387 ENSRNOG00000048858 ENSRNOT00000049989 1 1 1 60 10 34553685 34553703 CATCATGCACCCTGTTCTC 59 34553727 34553745 CAAGAAGCCTCCTACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066440.1 ENSRNOG00000045945 ENSRNOT00000051043 1 1 1 60 9 8899045 8899063 GAGAGCCACAGACTTAGGA 58 8899003 8899022 ATATGACAAGATCCACCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr408 ENSRNOG00000047092 ENSRNOT00000045825 2 1 1 60 3 16287896 16287916 GTCACACCAATGTTGAATCCC 60 16287937 16287956 GTGCTCCTTTCATATCCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472 1 2 4 159 19 753485 753503 ATACCCGCCTTAGTTGTGG 60 755470 755923 CATGGACCAGCTTTCTCAC 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654,ENSRNOT00000083153 3 2 2 80 1 189560253 189560272 ATAAGAACGTGAGCTTGACC 58 189560314 189571001 TAGGAGACCCTTGTAAAGGA 57 NA Rattus norvegicus 81 Kcnab1 ENSRNOG00000056697 ENSRNOT00000077973 2 1 1 80 2 155993011 155993477 ATGGAGATCATGGAAGCCT 58 155993519 155993539 AAGATGATACTCAGCTTGCTC 58 NA Rattus norvegicus 81 Kcnk12 ENSRNOG00000016110 ENSRNOT00000021570 1 1 1 104 6 11374922 11493592 TGTCGACCATAGGTTTCGG 60 11374836 11374854 TGAAGAACAGGATGGTCCC 59 NA Rattus norvegicus 81 Slc35d3 ENSRNOG00000012311 ENSRNOT00000016400 1 1 1 237 1 15301199 15301217 CTTGTCACCATGCTCATCG 59 15300115 15300133 CATATTGTGCGGTGAGAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100365622 ENSRNOG00000050411 ENSRNOT00000047138 3 1 1 60 3 102580141 102580161 CTCATCAAAGGCACTATCCAC 59 102580181 102580201 CCCAAAGAATAGCACAACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089,ENSRNOT00000042713 2 2 2 83 11 38677393 38677412 AAGAAGGAAATGTCAGCCTG 58 38675164 38677349 ACACATCTCCATGTTTGTCTC 58 NA Rattus norvegicus 81 Gdf7 ENSRNOG00000006046 ENSRNOT00000007928 3 1 1 118 6 33507241 33507259 TGATGTCGCTTTACCGGAG 60 33504475 33507160 TAAGAAGCTCTGGCCTTGAG 60 NA Rattus norvegicus 81 LOC100911271 ENSRNOG00000042112 ENSRNOT00000065485 1 1 1 80 4 69435735 69435848 TTGTTTCTTGAGAGCAGAACC 59 69435890 69435908 ACTTCTTGTCCCTTCCCTG 59 NA Rattus norvegicus 81 Kdm1b ENSRNOG00000016519 ENSRNOT00000022244 3 1 1 80 17 18012111 18014022 CCGAGGATCTAAGAGTGCTG 60 18012050 18012068 CACTGTCCTTCAGCAATGG 59 NA Rattus norvegicus 81 Cacna1a ENSRNOG00000052707 ENSRNOT00000083448 2 1 1 80 19 25623788 25623807 TTGATCTACGGACACTGAGG 59 25623849 25627651 GGACGACTTGTAAACTTGGG 59 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 1 2 2 80 11 57247457 57254070 CTAGTTCACAGGAATCTCCC 57 57254113 57254131 TGTGATGATGTTGACACCC 58 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000080745,ENSRNOT00000059510 1 2 2 80 17 43055090 43055109 GAGTGGAGAACAAAGTGCTG 59 43162927 43167460 TTAACTCGAGCTTGGTGGG 60 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056,ENSRNOT00000004885 3 2 2 80 10 34959132 34959152 TTTAAAGAGGAAGACCCTGTG 58 34957497 34959091 AACCTTGATTTCACACTTGC 57 NA Rattus norvegicus 81 Loxl1 ENSRNOG00000008680 ENSRNOT00000034300 1 1 1 80 8 63070122 63072126 TACATCCTCAAGGTGCACG 60 63070060 63070078 GATGTTGCATCTCACCACG 59 NA Rattus norvegicus 81 Adck3 ENSRNOG00000043201 ENSRNOT00000030135,ENSRNOT00000086306 1 2 2 80 13 98454044 98454062 CCACAGAGCTGATAACAGG 58 98453779 98454002 TGTTGTAGCAGATCTCATTCC 58 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 1 1 1 96 1 238834001 238834019 GAGAAGATGGCTGCTAGCA 60 238833707 238833941 AAATAGCTTCCACCTGCGT 60 NA DesignNoJunction Rattus norvegicus 81 Olr469 ENSRNOG00000031426 ENSRNOT00000051690 3 1 1 60 3 73307974 73307993 TGTGCTCTTTGTGGTATTCC 58 73308014 73308034 CATGCTCACATTACCAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gramd1c ENSRNOG00000047327 ENSRNOT00000071065 2 1 1 80 11 62611298 62628035 ATTGCTAGATAAGAGCCTGACC 60 62628074 62628094 GCGTTTAATCCTAGTTCGGTG 60 NA Rattus norvegicus 81 Trappc6a ENSRNOG00000017468 ENSRNOT00000023652 2 1 1 135 1 80423394 80423413 CACAGTACCTAGAGGAAGCC 59 80423626 80424176 ACCACCTGGAACTTACAGG 59 NA Rattus norvegicus 81 Serpinf1 ENSRNOG00000003172 ENSRNOT00000004313 2 1 1 85 10 62242566 62244360 CAACTGCAAGATTGCCCAG 60 62242499 62242517 TGGTCAAGTTCTGGGTCAC 60 NA Rattus norvegicus 81 Josd2 ENSRNOG00000019442 ENSRNOT00000026379 1 1 1 80 1 100474512 100476134 GAAATCTGCAAGAGGCTAGC 59 100476176 100476195 GTTGACATCATAGTTGCCGG 59 NA Rattus norvegicus 81 Cdc42se1 ENSRNOG00000060538 ENSRNOT00000086849 1 1 1 80 2 196406558 196407675 GATGGACTTGCCATGACAG 59 196407719 196407737 CCTAGAGTTGCTCCATGGT 59 NA Rattus norvegicus 81 Zc3hav1l ENSRNOG00000013944 ENSRNOT00000018645 2 1 1 80 4 65992836 66001144 TCCCAGAGGTCTGTTTACTG 59 65992775 65992796 ACTTGTTGCACTTATCCTTGAG 59 NA Rattus norvegicus 81 Dhrs9 ENSRNOG00000058568 ENSRNOT00000080525 2 1 1 93 3 55638575 55641847 CAATGACAGCTTAAGGCGG 59 55641903 55641922 TATTGGATCTGCCAGTCCTG 59 NA Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000010377 1 1 2 90 4 78074721 78075373 ACTCTTTGGGATTCTCAGTG 57 78074650 78074668 GATGACATCTTCTCCTGGG 57 NA Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000080654,ENSRNOT00000010377 1 2 2 60 4 78074630 78074648 AGAGATGAGAGCACACTGC 60 78073847 78073865 TACCTTCTTTCTGGCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem150a ENSRNOG00000061100 ENSRNOT00000079415 2 1 1 80 4 100218841 100219260 CATATGGACTGTGTATGCCA 58 100219567 100219586 GAGCAGGAATCATTGTAGGA 57 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 3 2 4 97 20 2058454 2058655 AACCAGAGCGATAAAGTCTC 58 2058715 2058733 AAAGCATGGCTATAGTGCG 58 NA Rattus norvegicus 81 Cpne5 ENSRNOG00000000522 ENSRNOT00000000629 3 1 1 80 20 6448944 6448964 CTGTGCAATGGAGACTATGAC 59 6438011 6440449 TCCAATGAAATCATGGCTGC 59 NA Rattus norvegicus 81 Hcn3 ENSRNOG00000020444 ENSRNOT00000027785 1 1 1 80 2 188464500 188464518 CAAGATCCTTAGCCTGCTG 58 188463070 188464457 ATGTGAAAGATCTCCTCCCA 58 NA Rattus norvegicus 81 Foxo6 ENSRNOG00000032639 ENSRNOT00000050941 2 1 1 89 5 139226840 139226860 CAGATCTACGACTGGATGGTC 60 139209506 139226789 CCGGATGGAGTTCTTCCAG 60 NA Rattus norvegicus 81 Ssh2 ENSRNOG00000014285 ENSRNOT00000019410 3 1 1 80 10 62751218 62751238 AACTAACGGTAGACAAGACAC 58 62743480 62751177 ATGGTACAAGTGCTACTGTC 57 NA Rattus norvegicus 81 Olig3 ENSRNOG00000012057 ENSRNOT00000016048 3 1 1 60 1 14798221 14798242 TCTAGCCAGAAACTACATCCTC 59 14798262 14798281 AACCAACCTCTTCATCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss53 ENSRNOG00000026040 ENSRNOT00000035672 1 1 1 80 1 199334161 199334298 CAGAACACCAGTGATGTTTCC 60 199334101 199334121 GTAGAGACAGTTACAGGTGGG 60 NA Rattus norvegicus 81 Olr233 ENSRNOG00000046869 ENSRNOT00000049607 2 1 1 60 1 171208634 171208658 GGGATTATTACCTATATGACTCCGA 59 171208598 171208617 AAACAGACACCAGTTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hn1 ENSRNOG00000003661 ENSRNOT00000004862 1 1 1 144 10 104064365 104064383 AACATCTTTGGGACACCTG 58 104062214 104063392 CACTTTCTCCCTTGAGGTC 58 NA Rattus norvegicus 81 Lipk ENSRNOG00000019409 ENSRNOT00000026299 1 1 1 80 1 252336207 252337453 CTCAAGGAAAGCAGTTCCG 59 252337495 252337515 AGGTTGCAAATCCAGTTACTG 59 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275,ENSRNOT00000042432 2 2 2 81 20 10375057 10375407 AGATGAGTATGGAGAAGGTGG 59 10374996 10375014 GAATCGAATCTGGCGTTGG 59 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 1 2 2 80 4 138701646 138745880 AATGTGGTTGTGAAAGACCC 59 138745922 138745941 AAGAACAATGCTTTCTCCCA 58 NA Rattus norvegicus 81 Rbm7 ENSRNOG00000005710 ENSRNOT00000007736 3 1 1 88 8 52827253 52827635 TAGATCAGGAAGTAGTCACCTC 58 52827184 52827202 TAGGAGATGTGGACGTAGG 58 NA Rattus norvegicus 81 Cuzd1 ENSRNOG00000029945 ENSRNOT00000050519 2 1 1 80 1 201890424 201890442 AGTCACTGACTGGACAAGG 59 201889159 201890383 CAGTTTGGAATAGTGGTACCAG 59 NA Rattus norvegicus 81 LOC100911028 ENSRNOG00000048275 ENSRNOT00000071925 3 1 1 82 1 213577937 213578950 GAGAACAAGCTACACAAACCT 59 213578994 213579012 ACAGCTTATAGGTGCCTGG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000088996 3 1 2 82 13 90521524 90522246 TTATGCAGCAGTTACAGGAC 58 90522453 90522471 ATCCAGGTCAAAGTTGAGG 57 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558,ENSRNOT00000015963 3 2 2 80 8 64681999 64682018 TTAGCTTTCTCCAACACCCA 59 64682056 64686967 GGGTTATACTGTACTTCTCTTCCT 59 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 1 2 2 80 19 674656 674676 TAGTCCTGTACCTAATGTTGC 57 674714 678094 CTTGATAGTTAGATACTCCTGGG 58 NA Rattus norvegicus 81 Olr295 ENSRNOG00000033387 ENSRNOT00000045179 3 1 1 60 1 212911348 212911366 CTCACTCCTCAGTCCAACC 59 212911306 212911326 CTTGACATCCTTGTTCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0641.3 ENSRNOG00000038181 ENSRNOT00000048151 1 1 1 60 X 63439762 63439780 CATGTTGGTGATGGGTGTG 59 63439720 63439741 ATTACTGACAATCTTGAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0641.3 ENSRNOG00000038181 ENSRNOT00000048151 2 1 1 60 X 63439921 63439939 CTTCCAGGAGCAAGATCCC 60 63439879 63439897 CACGACATACTCAGCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr3c2 ENSRNOG00000034007 ENSRNOT00000052018 1 1 1 80 19 34582038 34582056 TTCTGGGTGTCACTATGGG 59 34514078 34581994 TAGTTGTGTTGCCCTTCCA 59 NA Rattus norvegicus 81 Nr3c2 ENSRNOG00000034007 ENSRNOT00000052018 2 1 1 80 19 34750985 34751003 GGTGACCTGTCATCTAGGA 58 34582116 34750943 TCGTAAAGTAGAGCTTGACAC 58 NA Rattus norvegicus 81 Trim16 ENSRNOG00000003219 ENSRNOT00000065335 3 1 1 82 10 49245811 49248293 CTCTTCCTGGAGGAGTACTG 59 49248338 49248356 AGTTTATCCTTCAGCCCGA 58 NA Rattus norvegicus 81 Manea ENSRNOG00000008626 ENSRNOT00000011576 1 1 1 80 5 40856412 40860100 GCCTCCATTGGAGTACTGG 60 40856350 40856373 TACCAAGTAATCAGTAGCTTCTCC 60 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 1 2 2 80 6 26693349 26693367 ACCTCCTGAAAGACATGCC 60 26693411 26693727 CGGAGGATATGGTGCTGAG 60 NA Rattus norvegicus 81 Maff ENSRNOG00000012886 ENSRNOT00000017181 2 1 1 113 7 120590674 120590692 TCACCATTGTCAAGTCCGT 59 120590769 120590787 CTCTTTAGGACGGGAGTGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621,ENSRNOT00000088306 1 2 2 80 12 52069371 52069390 GCCCTAGAGACACAGTTGAG 60 52069211 52069328 ATGGCACATAGTGATGCGT 60 NA Rattus norvegicus 81 Mettl9 ENSRNOG00000025940 ENSRNOT00000039186 1 1 1 81 1 190985347 190990873 GAAGAAATACAGAGTGCTTGG 57 190990916 190990934 CAGCAGATTTAAGCAGCTG 57 NA Rattus norvegicus 81 Ywhae ENSRNOG00000005290 ENSRNOT00000007100 3 1 1 81 10 63914965 63914983 CTCCACACTCATCATGCAG 58 63915028 63920784 ATTCTGCTCTTCACCATCG 58 NA Rattus norvegicus 81 Trim35 ENSRNOG00000009449 ENSRNOT00000012528 2 1 1 82 15 42966578 42969596 CAAGCACAATGAGGTGCAG 60 42969642 42969660 CCACCCTCAGGAAATCTCG 60 NA Rattus norvegicus 81 Zc3h3 ENSRNOG00000007684 ENSRNOT00000010120 1 1 1 80 7 116868127 116868145 GTCTGATGCAGGTCAACAG 59 116840641 116868083 CATTGGAAGCTTCCTTGCT 58 NA Rattus norvegicus 81 Olr1315 ENSRNOG00000048263 ENSRNOT00000050312 3 1 1 60 8 43469986 43470004 GCTACCCTCTACGCTACTC 59 43469944 43469962 CCTATGGCTAGGATGGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga4 ENSRNOG00000004861 ENSRNOT00000006880 3 1 1 80 3 66252516 66252534 AGCTCAGGCGTAGTTAAGC 60 66252572 66253197 GAGAAAGCTAATGTCTATCCTTGAG 59 NA Rattus norvegicus 81 Olr270 ENSRNOG00000060915 ENSRNOT00000077837 3 1 1 60 1 172793161 172793182 CTACCTCGGATGTTCTATTCAG 58 172793203 172793221 GAAGCATTCAACTGTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Papl ENSRNOG00000047901 ENSRNOT00000071691 2 1 1 80 1 85145912 85145933 TTTCTTTCTCCACTATGGTCGT 60 85145971 85146067 TTCTTATTGGCTTTCTGGAGGT 60 NA Rattus norvegicus 81 Epha7 ENSRNOG00000007030 ENSRNOT00000009899 3 1 1 80 5 43742351 43742369 TCCATCAATTCGCCAAGGA 59 43742410 43743340 AAACTTCTCCAAATTCTCCTGC 59 NA Rattus norvegicus 81 RGD1565323 ENSRNOG00000021789 ENSRNOT00000065674 2 1 1 84 17 32973861 32975575 CCTCCTACAGACGTCAAGAG 59 32975621 32975640 CTTTCATCTCCCTCCGTCTC 60 NA Rattus norvegicus 81 Olr1130 ENSRNOG00000050565 ENSRNOT00000061325 1 1 1 60 8 18970318 18970338 GTTCCTCCAATGATGAATCCT 58 18970359 18970378 GTGCCTCCTTTATATCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1130 ENSRNOG00000050565 ENSRNOT00000061325 2 1 1 60 8 18969944 18969964 GTCTGCTTCATAGTCTGATGG 58 18969984 18970004 TGAAGGATTTCTAGGTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atrip ENSRNOG00000020670 ENSRNOT00000028055 2 1 1 80 8 117798937 117799361 AGCTGGAACAAGAGGTAGTG 60 117798876 117798896 GACAGTCAGAAACAATGCCAG 60 NA Rattus norvegicus 81 AABR07014487.1 ENSRNOG00000039548 ENSRNOT00000060618 3 1 1 60 14 17809284 17809302 GGAAGGAGTGGATAGGCTG 59 17809242 17809262 CTCTTTGAGTTTACACCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262,ENSRNOT00000084535 1 2 2 80 10 63380548 63381285 CTTCACAAGTAATGCTTCCCA 59 63381326 63381345 ATGGAAAGGCTGAAATCCTG 58 NA Rattus norvegicus 81 Arl11 ENSRNOG00000014653 ENSRNOT00000019646 1 1 1 80 15 41643601 41643620 AAGCTTGATTGTGGAGAGGT 59 41643663 41644371 CTCGTACATGGAGCTCCTC 59 NA InUTR Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073,ENSRNOT00000089056 3 2 2 80 16 19391922 19391941 TCGTAAGTTGGTCATCCTGG 60 19390289 19391882 AGGTCGCTACTCTTTAGTTCAG 60 NA Rattus norvegicus 81 Bcr ENSRNOG00000001304 ENSRNOT00000001766 1 1 1 80 20 14544969 14544989 CATAGTAGGTGTTCGCAAGAC 59 14480984 14544927 AACGAGGAATCTGCTTCCC 60 NA Rattus norvegicus 81 Isg20l2 ENSRNOG00000011402 ENSRNOT00000015471 1 1 1 87 2 187304110 187310798 GGAGTCAGATCTTGAAGATACTC 58 187310844 187310863 GGATGAAAGTACTGTAGGGC 58 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000032348 ENSRNOT00000043508 1 1 1 60 6 135139389 135139409 TTTATGCCCGAGATGAAACTG 59 135139429 135139449 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 1 2 2 80 17 10469489 10469586 GGAGAACTATGAGGCTCTCC 59 10469627 10469647 TCTATGTCTGCTTTGGTGAGG 60 NA Rattus norvegicus 81 Otop3 ENSRNOG00000053055 ENSRNOT00000083302 3 1 1 91 10 103892979 103896261 AGTTCTCAGGTAACGGGAC 59 103896315 103896334 GAAAGGGTAGAGCATCAGGA 59 NA Rattus norvegicus 81 Osgin2 ENSRNOG00000009358 ENSRNOT00000012394 2 1 1 80 5 29670989 29671008 GGAACAGCACCATTCTATCC 59 29667792 29670949 ATAGAGCCTTCCATATTATGCC 58 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583,ENSRNOT00000041165 1 2 2 80 20 14579851 14584816 CATAACGTAGGCAGAGTTGG 59 14584859 14584877 GAGGGTCTGGTGATCACTC 59 NA Rattus norvegicus 81 Obp1f ENSRNOG00000058697 ENSRNOT00000088538 3 1 1 80 X 45214324 45214343 TTGGACAGTGAATGTCAGAC 58 45214383 45215268 TCTACCAGAGTAGTCAGTAGTG 58 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000092223 3 1 3 88 6 29065173 29069743 ATGTGTTGGCTACTGTGGA 59 29069794 29069813 CATAGATCTGAGGGTAGCGC 60 NA Rattus norvegicus 81 RGD1310335 ENSRNOG00000039183 ENSRNOT00000033837 2 1 1 80 11 54397053 54397075 GTACTCAGTTGATCTACTCATGG 58 54395033 54397015 GAAGAGAAGTGCTCATACCTG 58 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076,ENSRNOT00000055238 2 2 2 80 10 88923981 88924004 CTAACATCCCAATTATGGACACTG 60 88924043 88924748 CGAAATTGGCCTCCAAGTC 59 NA Rattus norvegicus 81 Fads2 ENSRNOG00000020440 ENSRNOT00000027756 3 1 1 80 1 226119368 226119632 ACTTCTTCCTGATCGGACC 59 226119306 226119324 CTCTGCGTCTGATCATGGT 60 NA Rattus norvegicus 81 Sucla2 ENSRNOG00000017481 ENSRNOT00000065195 3 1 1 80 15 55485791 55485810 CCTGAAGCCATTGTAAAGGA 58 55485851 55488074 CATCTTCTTTGCAAGTGTCAC 58 NA Rattus norvegicus 81 LOC100911032 ENSRNOG00000049185 ENSRNOT00000058389 3 1 1 81 4 102643970 102644367 TGGATTCCTGCTTCCAGAG 59 102644411 102644430 TAGAGACTTGACCTCCAAGG 58 NA Rattus norvegicus 81 Olr1749 ENSRNOG00000048828 ENSRNOT00000073981 3 1 1 60 20 1937284 1937305 CTGAACCCTCTCATTTATACCC 58 1937326 1937344 AAAGTCTCCAGAATGCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC094001.1 ENSRNOG00000054026 ENSRNOT00000028126 2 1 1 60 1 216953437 216953458 TTCTCTTAGTCTTTGGGAACTG 58 216953398 216953417 GCCAACTTGCAGAATTTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs3 ENSRNOG00000059903 ENSRNOT00000087934 1 1 1 80 2 188537426 188537444 GACCGGGATGAAGATGGAG 60 188537488 188537586 ACTGTCTGCATCTGTCTGG 59 NA Rattus norvegicus 81 Gmds ENSRNOG00000017605 ENSRNOT00000023691 1 1 1 80 17 33659311 33659332 CAACTGGAATGTTTCAGTTTGG 59 33659370 33824015 CCACATAGCCTCTACATAGTCC 60 NA Rattus norvegicus 81 Def6 ENSRNOG00000000502 ENSRNOT00000000597 2 1 1 81 20 7797013 7797653 TCCTAGACAAGGTGGAGGA 59 7797697 7797716 TAGTTCTTCTTGGCCGTCAG 60 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 3 2 2 100 3 107754152 107754173 CATTGACCTCGTGATTGATGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Pcp2 ENSRNOG00000000993 ENSRNOT00000001313 2 1 1 106 12 2173672 2173690 ACCTCATGGATATGCTGGC 60 2172554 2173602 CATTCCATCCTTGGGACCA 59 NA Rattus norvegicus 81 Nudt8 ENSRNOG00000017955 ENSRNOT00000024237 2 1 1 87 1 219248680 219248698 GAAAGGCAACCATAGTCCC 58 219248749 219248857 ACTTCATCCACCTCCTCAG 58 NA Rattus norvegicus 81 Gtpbp3 ENSRNOG00000023403 ENSRNOT00000060355 3 1 1 81 16 19899777 19900011 TAGTGAATCTGCTCAGCCA 58 19900055 19900074 ACAGGAGTCTCCAAGATGTC 59 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753,ENSRNOT00000075868 3 2 2 82 6 93440425 93441796 ATGCCAAGGAATCTTTGAAGG 59 93441839 93441858 CAGAAATGGACACCAGAGGA 60 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000023117,ENSRNOT00000080694 3 2 4 80 19 41045407 41045430 TTCCATGTAAGACTCCCTATACTG 59 41044550 41045369 CCACAATGACTCGGAATCTC 59 NA Rattus norvegicus 81 Cgn ENSRNOG00000020952 ENSRNOT00000028440 1 1 1 80 2 195911585 195912166 CAGAAAGACCAGCTAACCCT 60 195911524 195911542 GTCCAGTCGCTCAATTTCC 59 NA Rattus norvegicus 81 LOC498414 ENSRNOG00000030665 ENSRNOT00000044737 3 1 1 80 14 90823145 90823421 CCTACATCCTGTGTCCTCC 59 90823083 90823104 GTAAAGACGAATGACATTTGCC 59 NA Rattus norvegicus 81 Pank1 ENSRNOG00000018944 ENSRNOT00000067822 3 1 1 80 1 253134782 253147933 TTCAGAATGATTGCGGACC 58 253134720 253134738 CGAGTCAACGTAAAGCAGG 59 NA Rattus norvegicus 81 Lfng ENSRNOG00000001250 ENSRNOT00000001682 3 1 1 80 12 16120818 16120952 CACAGAGTGAGACCTGTCC 59 16120756 16120774 CATCTTTAGGGCCAGTCCT 59 NA Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000082899 2 1 2 91 X 156891021 156891039 CATGCTCCTGGTGTCTACC 60 156890596 156890615 CATCCAGTAGTTCCTCCTGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 2 2 2 84 16 19663400 19667056 AAGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024,ENSRNOT00000033502,ENSRNOT00000016073 2 3 3 80 2 264992513 264994600 GATAATCAGTCCAAGGCCC 58 264992451 264992470 CATGTAGTTGGTCAGTACCC 58 NA Rattus norvegicus 81 Padi3 ENSRNOG00000006950 ENSRNOT00000009230 2 1 1 80 5 159312730 159313581 TTGCACAGAGCTGTATTGAC 59 159312669 159312688 GGATGTCAATGATGTCGCTC 59 NA Rattus norvegicus 81 Pbdc1 ENSRNOG00000002662 ENSRNOT00000003667 3 1 1 80 X 76046135 76046381 AACACTATCTTTGCACCCAG 58 76046422 76046442 GGAAACTGCTTTGTTATAGCC 58 NA Rattus norvegicus 81 Eaf2 ENSRNOG00000002350 ENSRNOT00000003208 2 1 1 80 11 66878824 66878844 CGAGCGGATTCTCAAATTAGG 59 66878886 66882209 GGTTTGAAGTCATAGCGCA 59 NA Rattus norvegicus 81 Wibg ENSRNOG00000058130 ENSRNOT00000092037 2 1 1 104 7 3173301 3173319 AGGCCAAGAAGTTACCTCG 59 3173387 3192580 GGCAATGTACTTGCCTGTG 60 NA InUTR Rattus norvegicus 81 AC117091.1 ENSRNOG00000032352 ENSRNOT00000041415 3 1 1 122 13 92197695 92197714 CTAATGTTTGCTGTCCTTGC 58 92197800 92197818 TCAGTGACCAGAGATGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 2 2 2 106 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199590 220199609 ATGACATCTGGCTTCACTCC 60 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409,ENSRNOT00000013514 1 2 2 80 4 175870651 175873786 TGATTATTCGAGCACTAGGAGG 60 175873823 175873845 CAGACCACTTAATACACGTTCTG 60 NA Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 3 2 2 80 3 82750196 82750215 GTGGTTGTTCTGAATGGCTG 60 82749551 82750155 GATCAAGAGGACTTCTCCTGG 60 NA Rattus norvegicus 81 Emc3 ENSRNOG00000009934 ENSRNOT00000013488 2 1 1 80 4 145476520 145477026 GCTTTGTCACAACTAAGGTC 57 145476459 145476477 GTGTGAGCAGCTCTATTCC 58 NA Rattus norvegicus 81 Fxyd7 ENSRNOG00000021067 ENSRNOT00000028603 3 1 1 95 1 89477256 89477275 CCACTATCATGTTCGTGCTG 59 89476835 89476951 ATTTGCATGTTGGGCTCTC 59 NA Rattus norvegicus 81 Ythdf1 ENSRNOG00000027015 ENSRNOT00000037271 3 1 1 80 3 176422824 176429636 CCAATCCGAGTAACAGTTACC 59 176422764 176422785 AGTAAGGAAATCCAATGGATGG 58 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 3 3 3 80 18 39476825 39476846 GAAGTGTGAAGATGGAACAGAG 59 39476884 39478985 ACATGATATTCTGGGTCTTTGC 59 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000065347 3 2 3 194 13 50498918 50498936 CTCATGGAGCATGGAGGAG 60 50497209 50498761 CCATCTTTGAAACGCTTGGT 60 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000075896,ENSRNOT00000075125 2 2 5 83 15 10289861 10291574 TTTAAAGCGGCCTCTAATTGTG 60 10289799 10289821 CTTCTTATTCAGCTGAGTCTGAG 59 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542,ENSRNOT00000081171,ENSRNOT00000078765 3 3 3 80 8 1676601 1676620 ACCAAACTAATGGATCGGTG 58 1654226 1676558 AGCAGAGGTGTACTTTGGA 58 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 1 2 2 80 1 101884699 101886182 CTCCTGATACAGGAGTTCCA 58 101886224 101886243 GGTACAGAAGTCCACATGAG 58 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076346 1 1 3 80 6 76701664 76702743 ACAATTAGGAAGGCAATGGC 59 76702783 76702804 CACAGAATAGGTCCCAATTCAC 59 NA Rattus norvegicus 81 Taf6 ENSRNOG00000001355 ENSRNOT00000001829 3 1 1 80 12 19325874 19325892 ATTCAGGAGGAGACTTGCC 59 19325426 19325831 GAACTTCAAAGCATCCTGGG 59 NA Rattus norvegicus 81 Bloc1s4 ENSRNOG00000054224 ENSRNOT00000091068 1 1 1 60 14 79014236 79014254 CAAACTAGAGGCCTTCGTG 58 79014278 79014296 GACTTGCTCCTCCATTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bloc1s4 ENSRNOG00000054224 ENSRNOT00000091068 2 1 1 60 14 79014237 79014256 AAACTAGAGGCCTTCGTGAG 60 79014278 79014297 TGACTTGCTCCTCCATTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.11 ENSRNOG00000051351 ENSRNOT00000076155 1 1 1 83 5 78041011 78041758 CTCGATGGGAAATCAAGATTCC 59 78040949 78040967 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 2 1 1 64 14 87701367 87701388 GGAGAAGAGAATAAAGGAGCAC 59 87701072 87701342 TTTCTGGTTGACAGGACTG 57 NA DesignNoJunction Rattus norvegicus 81 Cyb561 ENSRNOG00000007433 ENSRNOT00000009778 2 1 1 84 10 94138870 94139070 TGCTGTTTAAACTTGGGAGC 59 94138805 94138823 AAACAGATCAGCAGCAAGC 59 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000076276 1 1 3 80 14 60069713 60069731 GCTTCATCTCTATGGTCGG 58 60060090 60069670 GCTCCTTCTGGTATTCTTCC 58 NA Rattus norvegicus 81 Yipf4 ENSRNOG00000005610 ENSRNOT00000007607 3 1 1 87 6 22130181 22130202 GTGGTCTCATGGATTATAACCA 58 22128519 22130134 CATATGCAACTTCTCCACCA 58 NA Rattus norvegicus 81 Mylk3 ENSRNOG00000017546 ENSRNOT00000023657 3 1 1 80 19 27438278 27438296 GCTGATACCTTCAAAGGGC 59 27438335 27439587 CATCCTACAACTCTTCTCTTTGAC 59 NA Rattus norvegicus 81 Stk17b ENSRNOG00000012502 ENSRNOT00000016856 3 1 1 83 9 60416172 60420826 CGAAAGAACTTGGGAGAGGA 60 60416108 60416127 GGAATTTGGCAGCATACTCC 59 NA Rattus norvegicus 81 Adamts19 ENSRNOG00000019577 ENSRNOT00000026543 3 1 1 80 18 53958454 53958475 CTCAGAAGAAAGAGTCACAGAG 58 53958513 53967782 GACCTTGGTCTTCCTTTATCTG 59 NA Rattus norvegicus 81 Arhgef33 ENSRNOG00000007061 ENSRNOT00000061980 1 1 1 80 6 3075040 3075061 ATTACTATGTTGCCTACCTGAG 58 3075102 3076153 CTTCATCACCCTCCTTCAG 57 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 2 2 2 80 2 188670193 188670803 CAGAAGTGCTTCAGACTGG 58 188670131 188670152 GAAGCTCCAGGATATGATTCTC 58 NA Rattus norvegicus 81 Olr1521 ENSRNOG00000030521 ENSRNOT00000040681 3 1 1 60 10 75187410 75187429 CTGTTTCTGGTGTTCTTGTG 57 75187369 75187388 CTATGATGAGGAGGTTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0815.1 ENSRNOG00000046024 ENSRNOT00000059374 2 1 1 90 5 77298721 77298938 GATGTGGACAAGATGCAGC 59 77298419 77298437 ATACTTCCCTGCACTCTCC 59 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000010627 3 1 2 80 10 94179760 94179780 AGACATGGAGACGACTTACAG 59 94179822 94181917 TTTGTCAGATCAGGCTCCA 59 NA Rattus norvegicus 81 Nolc1 ENSRNOG00000018704 ENSRNOT00000025791 3 1 1 80 1 265832444 265832463 AGCAGCAGTAGTGAAGAGTC 60 265832504 265833335 CTTAACTGCTTTCTGCTGGAC 60 NA Rattus norvegicus 81 Sox13 ENSRNOG00000028353 ENSRNOT00000032244 3 1 1 81 13 50470756 50470858 TTACAGGAAGTTGTTCCAGC 58 50470902 50470920 CTTCCACAGAGCTTCTTCC 58 NA Rattus norvegicus 81 Ttpa ENSRNOG00000007139 ENSRNOT00000009611 2 1 1 80 5 34024501 34027015 TTAAGGGTCGGATTCATCTG 57 34027056 34027076 ATTCCAGAGGAAGAATGTCTG 58 NA Rattus norvegicus 81 Ndufs3 ENSRNOG00000009155 ENSRNOT00000012425 3 1 1 80 3 79726216 79726234 ACAGTTCAAATCCTTGGCT 57 79724395 79726173 AGCAGGTTGTAGACAATCTC 57 NA Rattus norvegicus 81 Bmp2 ENSRNOG00000021276 ENSRNOT00000028904 2 1 1 96 3 126337627 126343855 ATCACGAAGAAGCCATCGA 59 126343912 126343933 AGAAACTCATCAGTAGGGACAG 59 NA Rattus norvegicus 81 AC142181.1 ENSRNOG00000033815 ENSRNOT00000051964 1 1 1 80 4 70789102 70820224 AGGGTACAAGATTAGATATCGAGG 59 70820263 70820281 TCTCTGCTTCTGATGGCTC 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064395,ENSRNOT00000064345 1 4 4 80 3 111757459 111758443 TATGGCTCAGTCAGAGAACG 59 111758486 111758504 AAATCTTCCTCTGCAGCCA 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064395,ENSRNOT00000064345 3 4 4 80 3 111757402 111757420 AGCAGTTTCTCCTGCTCTC 59 111757463 111758447 TCATCGTTCTCTGACTGAGC 60 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 1 2 2 80 15 52302687 52302708 GAGGAGGAAGATGATGACTCTG 60 52301692 52302650 GGAAGTAACCTTACTGAGTTCCT 60 NA Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 3 2 2 80 15 52302680 52302701 AAGATGATGACTCTGAAGAGGA 59 52301685 52302643 CCAAGTTGGAAGTAACCTTACTG 59 NA Rattus norvegicus 81 LOC684545 ENSRNOG00000049759 ENSRNOT00000073464 1 1 1 80 1 73100718 73100736 TCTCTTGGACAAGGGTGTG 59 73095478 73100675 TTCTCCAACGATACCCTCTG 59 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332,ENSRNOT00000001333 2 2 2 80 12 2235235 2235254 GGATTGGTCTCCAGGATCTC 59 2234851 2235194 GACTCCAGTTGCTATAACCCA 60 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355,ENSRNOT00000013621,ENSRNOT00000080788,ENSRNOT00000079513 1 4 4 80 4 152473329 152475504 CTAATTCAGACCCAGCAACC 59 152473268 152473288 TGTCACTGGAATAGTCTCTGG 59 NA Rattus norvegicus 81 RGD1560523 ENSRNOG00000028513 ENSRNOT00000036417 1 1 1 81 13 30493750 30493771 CAGCATGATGAAGAAGTTTGTC 58 30493688 30493709 GGTACTTTGCTACAACAGCT 58 NA Rattus norvegicus 81 RT1-M3-2-ps ENSRNOG00000060503 ENSRNOT00000082075 3 1 1 64 20 1833014 1833033 TACTCCAACCAGAGTGAAGG 59 1832754 1832772 AGAAGTCTCATGTCTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Cd300a ENSRNOG00000057058 ENSRNOT00000085262 3 1 1 80 10 103446958 103448791 TCAGTCAAAGCTGATAAGCAC 59 103449202 103449223 ATTGACATACTGGGATTCACTC 58 NA Rattus norvegicus 81 LOC103690271 ENSRNOG00000052885 ENSRNOT00000091678 1 1 1 60 1 213258881 213258901 ATCGACCATGGACATTATCTG 58 213258923 213258941 TAGTAGACCAACCAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 2 3 3 80 4 7133354 7133592 ACCATCAGCACTTACAGGA 58 7133636 7133654 CCTTGATCTCTGGGTAGCA 59 NA Rattus norvegicus 81 Pth2r ENSRNOG00000015259 ENSRNOT00000021099 1 1 1 80 9 72096291 72102061 CATTGGCTATTTCAGGCGG 59 72102105 72102123 ATGGCTCTCAGCATGAAGG 60 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975 2 1 2 119 14 75852242 75880311 ACGCGACTCAGTAATTGGA 59 75880394 75880412 CATGCTGTACAGCTCAGGA 60 NA InUTR Rattus norvegicus 81 Fdxr ENSRNOG00000058497 ENSRNOT00000085636 3 1 1 85 10 103822206 103822228 TAGACATCTATGAGAAGCAGCTC 60 103821951 103822167 GATGACATTCTTTACTTCAGGATGG 60 NA Rattus norvegicus 81 Rn60_14_0459.2 ENSRNOG00000051132 ENSRNOT00000073146 2 1 1 60 14 46070116 46070134 GCCCATTAAGGAGCATCTG 58 46070074 46070093 GAAGTCGTTGACCAGATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gli4 ENSRNOG00000021765 ENSRNOT00000077773 3 1 1 138 7 116675158 116675813 GATACCTGGCTTGACTCTG 57 116675915 116675933 ATTCCTGGTCAATGCTGTC 58 NA Rattus norvegicus 81 Rn60_14_0792.1 ENSRNOG00000031296 ENSRNOT00000042870 1 1 1 60 14 79113508 79113530 ACAAGAAGATCAAGTCCCTAGAG 59 79113547 79113568 TCAGATCTTATAATGGGCAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr198 ENSRNOG00000049227 ENSRNOT00000041317 3 1 1 60 1 170109892 170109910 ACAGGGACTACCAGTTGAC 59 170109930 170109952 CAGACCAGAATCATGTCAATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc109b ENSRNOG00000009433 ENSRNOT00000012587 1 1 1 80 2 230203223 230213637 GCGTCACGAGAAAGAAAGG 59 230203161 230203182 GTAAAGAGTCTGTGAACCAAGC 60 NA Rattus norvegicus 81 LOC100911889 ENSRNOG00000046734 ENSRNOT00000072934 3 1 1 80 4 82373109 82373128 GAACTACGTTTCAAGACCGC 60 82373170 82373759 TGAAACCACACCTTGATGGT 60 NA Rattus norvegicus 81 Bin2a ENSRNOG00000032461 ENSRNOT00000037757 2 1 1 80 8 27936831 27937529 CCTTCATACAAGTAAAGGACTGG 59 27936773 27936794 GGCCAATATTCCAATATCGTCC 59 NA Rattus norvegicus 81 AABR07031918.1 ENSRNOG00000051569 ENSRNOT00000086651 1 1 1 86 18 39173119 39173141 CTCTGAAATGCCTTATCAGTCTC 59 39173182 39209265 CCATGAATAACTGTATTTCCCTGG 60 NA Rattus norvegicus 81 Olr1409 ENSRNOG00000047344 ENSRNOT00000046476 1 1 1 60 10 36530940 36530960 CTTCACCACCAATCTCATTCC 59 36530982 36531000 GATGATCTCCGTTCCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarcc2 ENSRNOG00000031135 ENSRNOT00000028244 1 1 1 80 7 2884845 2885139 AAATGCTAAGAAAGGACCCTC 58 2885180 2885199 TTTGTCAGGTCTTCTTGCTC 58 NA Rattus norvegicus 81 Rn60_X_0637.4 ENSRNOG00000051319 ENSRNOT00000076935 2 1 1 81 X 63107985 63108003 GAAAGAGGGCCAGAAAGGA 59 63107688 63107942 TCTTGGATCCAGTGTCATGTC 60 NA Rattus norvegicus 81 Commd7 ENSRNOG00000010538 ENSRNOT00000014038 1 1 1 81 3 149110863 149110882 CACCACCAATCAGATCAGTC 58 149104752 149110821 CTTCTTCAATGCACCATTTGG 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 3 3 3 85 7 2907679 2907936 CAAGAGCGATGAGATGAATGTG 60 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Sidt1 ENSRNOG00000002013 ENSRNOT00000002759 2 1 1 80 11 61376066 61384004 TCCATCACATGAGGTTCCA 58 61388276 61388295 GTGAGACAGCCATATTTCCA 58 NA Rattus norvegicus 81 Gtf2a1 ENSRNOG00000004300 ENSRNOT00000005873 1 1 1 80 6 115328268 115328289 TGATGTAAGTGATGAGGAAGGG 60 115324977 115328233 CTTCTGTGTATCTTATCATACTGGC 59 NA Rattus norvegicus 81 Gtf2a1 ENSRNOG00000004300 ENSRNOT00000005873 2 1 1 80 6 115332328 115332596 TTATCCAGCAGGTCCTAGC 59 115332266 115332285 ATAAGATTTGCTGTGGCTGG 59 NA Rattus norvegicus 81 Gtf2a1 ENSRNOG00000004300 ENSRNOT00000005873 3 1 1 80 6 115334044 115336090 GCATCAAGTATTACGAGTGCT 59 115333984 115334005 TAGTATCTGCTGAACAGGAGTC 59 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 3 2 2 81 3 91476412 91477405 CAGATGAAGATCCAGGAGGA 58 91477449 91477467 TTTCTTTGCTCAGCTCCAC 58 NA Rattus norvegicus 81 Map7d1 ENSRNOG00000010237 ENSRNOT00000065871 3 1 1 80 5 144257651 144259101 GACGTAAGACCAGTGGGAG 60 144257589 144257610 GCCGCTTGTTGATTATAGAGTC 60 NA Rattus norvegicus 81 Fbxo40 ENSRNOG00000002459 ENSRNOT00000003340 3 1 1 81 11 66728249 66728267 GATGGTCCTCTTGCAATGG 59 66728310 66730649 GAACTGCCAGATCTGATTGTG 59 NA Rattus norvegicus 81 Dnali1 ENSRNOG00000024957 ENSRNOT00000029388 2 1 1 81 5 143061550 143061568 CTCAACTTCCTGTGTCCCA 59 143060304 143061505 TTCTACCCACTCCCTTGGA 60 NA Rattus norvegicus 81 LOC100909966 ENSRNOG00000032371 ENSRNOT00000045582 2 1 1 60 1 149603103 149603124 GTACTTCCCATCAGTTACAGAC 58 149603064 149603084 TCCAAGAATGACAGATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glt6d1 ENSRNOG00000027900 ENSRNOT00000034538 3 1 1 80 3 3260581 3264026 ATCCACTTGAGGAACCACC 59 3257016 3257035 CGTGATAACATCCAAGCGTC 60 NA Rattus norvegicus 81 Emp2 ENSRNOG00000002664 ENSRNOT00000003615 1 1 1 80 10 5455771 5460795 AACCATTGACAATGCCTGG 59 5460838 5460857 GTACAGTTTGTGCTGTTGGT 59 NA Rattus norvegicus 81 Hoxb8 ENSRNOG00000007585 ENSRNOT00000009986 1 1 1 245 10 84131744 84131762 AACTTCTACGGCTACGACC 59 84132750 84132768 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Snx2 ENSRNOG00000017832 ENSRNOT00000050631 3 1 1 80 18 48161780 48161800 TATTGAGGATGGTGAACAAGG 58 48161842 48162115 CTTCAAACCATGCATCCGA 59 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 3 3 3 80 7 63797162 63797182 GACCCTAGGATTGATGTTCAG 58 63797223 63803501 AACAGTGTTCCCTTCTTAGC 58 NA Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 1 3 3 80 17 59742611 59746541 TAAGACTCGAGGGAGAAGC 58 59746585 59746603 TCTGGGTTAGGAAGGAAGC 59 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560,ENSRNOT00000058906 2 2 2 80 5 88573199 88573217 AAACGCAGAAATGGTCCAG 59 88569932 88573159 CCCATCACTGTCATAGTTATCCT 60 NA Rattus norvegicus 81 Rogdi ENSRNOG00000003125 ENSRNOT00000004176 3 1 1 80 10 10761870 10762662 GACATCCTTAAGGAGGCCT 59 10762705 10762724 GATGAAGTTCTCCTGCTTGG 59 NA Rattus norvegicus 81 Il18bp ENSRNOG00000020150 ENSRNOT00000027301 2 1 1 80 1 167091992 167092011 CTTCTCCTGTCTGTTTGTGG 59 167091751 167091950 GTCTTCAATCCATCCCAGAG 58 NA Rattus norvegicus 81 Gata4 ENSRNOG00000010708 ENSRNOT00000014320 3 1 1 94 15 46388296 46389260 TGTCCCAGACATTCAGTACTG 60 46388222 46388241 AGGAGATGGATAGCCTTGTG 59 NA Rattus norvegicus 81 Vwc2l ENSRNOG00000027400 ENSRNOT00000033459 1 1 1 80 9 77837096 77837117 TACTTCTATTGGTCATCCCTGG 59 77837157 77837317 CAGGTCCATCTTCATCAGCA 60 NA Rattus norvegicus 81 Rn60_5_0814.20 ENSRNOG00000051058 ENSRNOT00000076634 3 1 1 60 5 77733802 77733822 TTTGAATGTACTGAGTGTGGG 58 77733762 77733784 TCTGATGGATAACTAGGTGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdia6 ENSRNOG00000050197 ENSRNOT00000074829 2 1 1 80 6 42580689 42581373 GCCGGTATGGGATTAAAGG 58 42581417 42581435 TCCGTCCACCATCATAGTC 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 3 2 2 89 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940076 112940094 CTTTCTGCCGATCATCGTC 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 2 2 4 80 2 9465208 9465228 GGAAATATCACCTTTCCACCC 59 9463421 9465167 ATCATTCTCTGGTACCTCGT 58 NA Rattus norvegicus 81 AABR07073045.1 ENSRNOG00000060344 ENSRNOT00000072795 2 1 1 60 4 120413796 120413817 TTCAGGAGCTACTTAGTAAAGG 57 120413757 120413775 ATTACTTGGGCTCTGTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd8 ENSRNOG00000013390 ENSRNOT00000017889 3 1 1 82 4 127165614 127165632 GTAGTGGAAGTGGATCACG 58 127165677 127170199 AACATGGATCTGAAGTACGG 57 NA Rattus norvegicus 81 Fbxo28 ENSRNOG00000000066 ENSRNOT00000000074 1 1 1 80 13 100724765 100724786 CTGTCACTGTTAAACATGACCT 59 100716680 100724726 CTCATCAATCACCTTTCCTGG 59 NA Rattus norvegicus 81 Use1 ENSRNOG00000016619 ENSRNOT00000022650 2 1 1 86 16 19763263 19763575 CTGGAGAAGTATGTGGGTG 57 19763700 19763718 CTCACTGATCACTTCCGAG 57 NA Rattus norvegicus 81 Olr298 ENSRNOG00000061803 ENSRNOT00000091487 3 1 1 60 1 212990899 212990921 CTACTCCACTATCATCTACACCT 59 212990861 212990882 GTCCTTGTTCAATGAGTAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 1 2 2 80 7 97042784 97047404 AGTACCACTCAGGTCAACTC 59 97042723 97042742 ACAAGTGTTAGTGCAGACAG 58 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 1 3 3 83 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Olr1132 ENSRNOG00000039919 ENSRNOT00000061323 2 1 1 60 8 19019563 19019582 AGTCCCTTAGAAACACAGCA 59 19019522 19019540 TTGAGCAAAGGAGGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000021972 1 1 2 80 18 44737211 44737229 CCAGGTGGACATCTATGGA 58 44737271 44738108 TGTTACATTCTCCCTACAGCA 59 NA InUTR Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000021972 3 1 2 80 18 44737212 44737230 CAGGTGGACATCTATGGAC 57 44737272 44738109 TTGTTACATTCTCCCTACAGC 58 NA InUTR Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000020160,ENSRNOT00000020204,ENSRNOT00000074146 1 4 7 131 17 57082613 57082631 TACTGCTTTGCCACAAGGT 60 57082724 57088179 CATTCTTTAGCAGCTTCCCTG 59 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000045495,ENSRNOT00000081386,ENSRNOT00000067422 3 4 4 81 7 143125335 143125356 GATCAAGGCTCAGTATGATGAC 59 143125397 143125650 TATCTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Tmem64 ENSRNOG00000007426 ENSRNOT00000009759 3 1 1 98 5 28865043 28865061 ACTTGGGAACCACACTACG 60 28865120 28867054 GGCCTATGCTGATAACAATCTG 59 NA Rattus norvegicus 81 AABR07072759.1 ENSRNOG00000052461 ENSRNOT00000088298 3 1 1 80 2 193837469 193837490 TAAAGTCTGGATACCAAGCAG 58 193837409 193837428 CCTTCCGATGAATAGGAACC 58 NA Rattus norvegicus 81 LOC685157 ENSRNOG00000047079 ENSRNOT00000065873 2 1 1 80 12 20276083 20276102 TTCCTGAACAGAATCTGGCT 59 20275727 20276043 CTAATGAATTCCCAGTGTGCAG 60 NA Rattus norvegicus 81 Epc1 ENSRNOG00000014834 ENSRNOT00000019968 3 1 1 80 17 57318026 57318045 AGCTGAGGAAGAGAATGACC 59 57317889 57317989 TCTAAATGAGGAGCATAGTACTGAC 60 NA Rattus norvegicus 81 LOC102556447 ENSRNOG00000036958 ENSRNOT00000055537 3 1 1 80 2 238407379 238436967 AGCAAACAGATTGACAGGC 59 238407317 238407337 CAGTAGCTTGGCTGAAATCTG 59 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000072149 1 1 2 85 1 80218448 80218911 CCGAGAAGAAACACTTACCC 58 80218382 80218400 TTCTGCATTTAGCTGCAGC 59 NA Rattus norvegicus 81 Tmem261 ENSRNOG00000023946 ENSRNOT00000031852 2 1 1 94 5 92038919 92038937 CGTCTACTTTGTTGCCAGG 59 92038618 92038861 AACAGGCAATACTGATGCC 58 NA Rattus norvegicus 81 Olr413 ENSRNOG00000047478 ENSRNOT00000046877 1 1 1 60 3 20879434 20879458 TCTCTGTGGTATCTCTGTATTATGG 60 20879470 20879494 CTGGATGAAGGTATAAGGTAAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akirin2 ENSRNOG00000008288 ENSRNOT00000010962 2 1 1 80 5 50014829 50014848 TGTTGAAAGAACGGGAAGAG 58 50014890 50015610 ATGCATCGTATTGTTCTGCA 58 NA Rattus norvegicus 81 Fam109a ENSRNOG00000028206 ENSRNOT00000030600 2 1 1 77 12 40227213 40227232 CTTCCTGTACAAACGTGGTG 59 40227155 40227173 TAGAAGAGTATGTTGCCGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iah1 ENSRNOG00000060853 ENSRNOT00000087180 2 1 1 80 6 43396145 43396165 CGAGTGATTCTTATCACACCA 58 43396205 43397844 GTTCAATTTGCAACCCTTCAG 59 NA Rattus norvegicus 81 Zmat1 ENSRNOG00000024135 ENSRNOT00000042714 2 1 1 80 X 105818207 105818226 AACACAGTACTACTCCAGCA 58 105810430 105818166 AGGTTCTCATTCTGTATGCTG 58 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000026227,ENSRNOT00000080365 3 2 2 80 18 57148308 57148326 TTCCTACGAGCCTCATTCC 59 57146555 57148267 GATAATGTTCCCAGTGACTCTC 58 NA Rattus norvegicus 81 Tmem35 ENSRNOG00000001506 ENSRNOT00000002058 1 1 1 80 X 105134887 105143809 CAGTGAGATGAAACGTGCT 58 105143851 105143871 AGGAGAATGGAATTAATGCCC 58 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 3 1 2 100 X 63290361 63291043 CGCCACATTGGATGTTACC 59 63288340 63288358 TCCCATGAGCTACATGACC 59 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 2 2 2 80 2 149547643 149547662 AGACGTCTTTCTTCCTTGTG 58 149545983 149547603 ATTTCAAGTCCTGATGAGACTC 58 NA Rattus norvegicus 81 Cpvl ENSRNOG00000009172 ENSRNOT00000085812,ENSRNOT00000012196 1 2 2 80 4 84087867 84087885 GTGCGAAGGTTCAAGATCC 59 84087472 84087827 GTACCCTCCTATAATCGTTTCAG 58 NA Rattus norvegicus 81 Adam17 ENSRNOG00000060694 ENSRNOT00000081110 2 1 1 80 6 43425429 43427234 GGCAGAATATAACATAGAGCCAC 59 43425371 43425392 TCTTCAGACTTATACACCAGCA 59 NA Rattus norvegicus 81 Nacad ENSRNOG00000053875 ENSRNOT00000087212 2 1 1 80 14 86861299 86861317 GATTGCCAAGCCAGATGTC 59 86861155 86861256 GACAGATCCTCAATCTTGGC 59 NA Rattus norvegicus 81 LOC497934 ENSRNOG00000006513 ENSRNOT00000008507 2 1 1 62 10 55642722 55642740 CATCTCCAGCCCACTAGAG 59 55642766 55642784 ACAAAGTGAGTAAGGTCGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565212 ENSRNOG00000012402 ENSRNOT00000016562 3 1 1 80 15 47337440 47338853 AGTCTTCCAGTTTCAGAAACCT 60 47337381 47337400 TCCCTCAGCTCATCAAACTC 60 NA Rattus norvegicus 81 Dkkl1 ENSRNOG00000020686 ENSRNOT00000028082 2 1 1 80 1 101208786 101208933 GATAGACAAGATGACTGACAACC 59 101208728 101208747 TTCACTTCTGGCTCAATGGA 59 NA Rattus norvegicus 81 Rn60_X_0602.1 ENSRNOG00000051327 ENSRNOT00000076547 2 1 1 119 X 59591943 59591961 TAGCAACTCACTGGCAGAC 60 59591373 59591391 TAGATGCAAATGCTCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Apobec2 ENSRNOG00000012303 ENSRNOT00000016893 2 1 1 65 9 14529430 14529448 GAAGGAGCTGATCGATCTG 58 14538340 14538358 AAGAAGTTGACAGGCAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 1 2 2 81 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057334 17057352 CAGGAGATCCTTGCAGGTC 60 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 3 2 2 115 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057300 17057319 TGTTATCCCAAGGGAACTCG 60 NA Rattus norvegicus 81 Pamr1 ENSRNOG00000005348 ENSRNOT00000064282 2 1 1 80 3 92443890 92450300 AATTCACCCAGGTTGTACCA 59 92450342 92450361 TAGAAGTCGTCCAGAGTTCC 59 NA Rattus norvegicus 81 Syt14 ENSRNOG00000046139 ENSRNOT00000073041 1 1 1 80 13 111640510 111667743 AATCCTTCTGGTTGTGACTC 58 111640449 111640468 TTCTAGAGACTGACAGGAGG 58 NA Rattus norvegicus 81 Stfa3l1 ENSRNOG00000030984 ENSRNOT00000049463 2 1 1 92 11 67551150 67551169 CCTGTTACCTCTAGCATTCC 58 67544719 67551095 TGGTTTGACCAGGTAACAG 57 NA Rattus norvegicus 81 A3galt2 ENSRNOG00000005935 ENSRNOT00000007851 2 1 1 97 5 146940273 146940291 AAGAAGAGACTCCTGTGGC 59 146940350 146940528 ATGAACACTTCAAAGAGCCTG 59 NA Rattus norvegicus 81 LOC498933 ENSRNOG00000011671 ENSRNOT00000015541 3 1 1 81 19 32376407 32379111 ACTGAGACAACTTCAGCGA 59 32379156 32379174 GGAGGAGAATCGATCCGTG 60 NA Rattus norvegicus 81 Rn60_X_0592.1 ENSRNOG00000051296 ENSRNOT00000076286 3 1 1 85 X 58335571 58335694 TCTTTCTGCATAGTGTCATTGG 59 58335738 58335758 GCTGCATAAGATTTAGCACCA 59 NA Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 2 2 2 80 4 78451462 78451480 GATTGTTGTGTCTGTGGCT 58 78451044 78451420 TCTTCATCATTCAAGACCTGG 58 NA Rattus norvegicus 81 Afap1l1 ENSRNOG00000019403 ENSRNOT00000026495 3 1 1 80 18 57065491 57065509 CCTCCTGCAGTGAGAAGTC 60 57062296 57065449 ACTTGTATTGATTGGCACTGG 59 NA Rattus norvegicus 81 Dip2c ENSRNOG00000015288 ENSRNOT00000020634 2 1 1 80 17 63764357 63770096 TAGCTGGTGTAAAGATGTCTC 57 63770135 63770156 TAGAAGGGTAAAGTTCACACTG 58 NA Rattus norvegicus 81 Zfp786 ENSRNOG00000006925 ENSRNOT00000038550 1 1 1 80 4 77499579 77502748 GTTACCCGAGAGTAGCCAG 59 77499517 77499536 CTCTCCAGAGGATGTATGGG 59 NA Rattus norvegicus 81 Fgfbp1 ENSRNOG00000003095 ENSRNOT00000004128 3 1 1 60 14 71649751 71649769 AGGAAGGAGAAAGCAGAGG 59 71649793 71649811 TGGAGACAGCTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssc5d ENSRNOG00000016687 ENSRNOT00000022480 2 1 1 80 1 72445908 72445928 TACCACTAGCACCAGAAAGAG 59 72445203 72445866 GGCTTCCTTGGTAAACCTG 59 NA Rattus norvegicus 81 Kcnj8 ENSRNOG00000013463 ENSRNOT00000018057 2 1 1 80 4 176784305 176787762 GACCAATGTCAGGTCATTCAC 59 176784245 176784264 ATCATTCTCCCTCCAAACCC 60 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661,ENSRNOT00000005637 1 2 2 80 6 54585200 54585221 GGGATAAAGCCATTAGGATGAG 59 54585262 54588320 TGTGCTTCAGTTCATCTGG 58 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109,ENSRNOT00000048141 1 2 2 80 3 112473451 112473472 GTGAGACCATGAGTACAATGAG 59 112473513 112475209 CATTCGCATCCTCGTTCAC 59 NA Rattus norvegicus 81 AABR07040127.1 ENSRNOG00000053601 ENSRNOT00000080243 1 1 1 81 X 93530346 93530366 TGGACTAAGTGGACATTCCTC 59 93530406 93530430 ATGCTGTTCTTCAACTTCAACC 60 NA Rattus norvegicus 81 AABR07040127.1 ENSRNOG00000053601 ENSRNOT00000080243 2 1 1 82 X 93530345 93530365 CTGGACTAAGTGGACATTCCT 59 93530406 93530430 ATGCTGTTCTTCAACTTCAACC 60 NA Rattus norvegicus 81 Nek8 ENSRNOG00000012866 ENSRNOT00000017264 1 1 1 80 10 65426700 65426721 TGGATGAGACTCATCCTTACAC 59 65426255 65426659 CTGTGACTGATCGAACAGC 59 NA Rattus norvegicus 81 AABR07043892.1 ENSRNOG00000050326 ENSRNOT00000071024 2 1 1 143 19 46164476 46167631 TGATTACGTCTTTGTCGTGC 59 46164352 46164370 AGATCCTGTCCAAATGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Mrto4 ENSRNOG00000017979 ENSRNOT00000024326 3 1 1 80 5 157815873 157815893 TTGCTGTCTGACTATGAAGTG 58 157815701 157815831 ATACCCAAACAGCTTCAGG 57 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 2 2 2 80 14 11201123 11201142 TCACATACACAGACGAAGAG 57 11201184 11201308 TGATTTCACACTTCCCAGAG 58 NA Rattus norvegicus 81 Kcnk5 ENSRNOG00000047005 ENSRNOT00000075153 3 1 1 80 15 4590327 4590346 CCAGACTTTCAACAACTGGA 58 4590387 4591304 ACATTACCATAACCGATGGTG 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 2 2 2 80 X 82882743 82882766 TGAAGTAGGAGAGGATAATGACAG 59 82875543 82882704 TCGTTGGACTCCTCTTGAG 59 NA Rattus norvegicus 81 Rnaseh1 ENSRNOG00000008584 ENSRNOT00000011819 2 1 1 80 6 47923740 47924205 CATCAACGGGATAACTAACTGG 59 47924245 47924264 TTGTTGATCACGTCTTTCCC 59 NA Rattus norvegicus 81 Gnrh1 ENSRNOG00000013441 ENSRNOT00000018006 1 1 1 80 15 44444450 44444468 CCCAGAACTTCGAATGCAC 59 44444510 44445882 CTTCAATCAGACGTTCCAGAG 59 NA Rattus norvegicus 81 Lamtor1 ENSRNOG00000020016 ENSRNOT00000027150 2 1 1 83 1 166995141 166995159 TACCATAGCCTGCCTTCAG 59 166995203 166995444 ATCAATGATGTTGCTAGCTGTC 59 NA Rattus norvegicus 81 Cilp ENSRNOG00000029911 ENSRNOT00000044887 1 1 1 80 8 70771184 70773101 TGTCATTGCACACGATGAG 59 70773145 70773163 TTCTGGAAGCAATCATGGG 58 NA Rattus norvegicus 81 Olr760 ENSRNOG00000027004 ENSRNOT00000030909 3 1 1 60 3 102671518 102671538 CCCTGCATCTTCATTTATGTG 57 102671478 102671498 CAGCAAGAAATTTGTCCAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggct ENSRNOG00000034084 ENSRNOT00000043752 2 1 1 81 4 85188003 85189384 CTCTGGATGAACAAGAAGGA 57 85187941 85187959 ATGTCCTTCCCTTGTTGAG 57 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000012792,ENSRNOT00000091135,ENSRNOT00000029340 3 3 3 80 2 177849015 177853391 CGCCCTTTGGCATAAACTC 60 177848953 177848972 TCCTATGACGCTCCAAACTC 60 NA Rattus norvegicus 81 Dlx3 ENSRNOG00000004278 ENSRNOT00000005797 2 1 1 98 10 82938398 82938417 GCCCAAGTCGGAATATACCT 59 82938478 82939540 TCCTCTTTCACCGACACTG 59 NA Rattus norvegicus 81 LOC100361139 ENSRNOG00000037661 ENSRNOT00000057140 2 1 1 116 X 107613309 107613330 CAAGATGAGTGATAAACCAGAC 57 107612720 107613232 TCCTGCTGGATAGTTTCCT 58 NA InUTR Rattus norvegicus 81 Ahctf1 ENSRNOG00000023541 ENSRNOT00000078034,ENSRNOT00000035875 2 2 2 80 13 98070001 98070022 GTGTTCTTTGCCTTTATGACCT 59 98068345 98069960 GCTCGATAGCTGTTACCCT 59 NA Rattus norvegicus 81 Spesp1 ENSRNOG00000025359 ENSRNOT00000049441 3 1 1 96 8 67219142 67232101 CTTTCTGGCGTATCCAACC 59 67219064 67219083 GGGAACACTCATTATGAGGT 57 NA DesignNoJunction Rattus norvegicus 81 Spag16 ENSRNOG00000042609 ENSRNOT00000068450 3 1 1 80 9 77478284 77478302 TCCAACACTCTTCTCACGG 59 77573384 77573405 CAGAGACTGCTCACATTTACC 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 3 5 7 81 15 5509800 5509819 GCTAGTTCAGAAGGAGAGGG 59 5508988 5509758 CCGAATAAACCAAGACAGGAG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 2 7 7 80 15 5464589 5464609 AGATGACCAACTGGATAAGTG 58 5464086 5464547 AGTTTCTGATGCGGTAGGA 58 NA Rattus norvegicus 81 AABR07061078.1 ENSRNOG00000047920 ENSRNOT00000047620 2 1 1 60 4 103646652 103646672 AAGATCAGTAGAGTAGAGCCT 57 103646612 103646631 AATGTGTACCTTGGTAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2b ENSRNOG00000009192 ENSRNOT00000012231 3 1 1 80 15 45439914 45441852 GTCAGTTCAATCAGGAGGC 58 45441893 45441914 GCCTTTATGAGATAGTGAAGGA 58 NA Rattus norvegicus 81 Slc13a1 ENSRNOG00000008121 ENSRNOT00000010788 3 1 1 80 4 51125682 51125702 CATCTTTGACAGAGGTAGCCA 60 51124228 51125640 GAATGGCTTCAGCCAAAGG 60 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000090387 2 1 3 80 17 53967297 53967538 TCTGGAAGAACAGTCATGGT 59 53967581 53967599 GGTGAACTTTACTGTGGGC 59 NA InUTR Rattus norvegicus 81 Tacc3 ENSRNOG00000017259 ENSRNOT00000032972 2 1 1 80 14 82339988 82340903 GTGACAAATAGTACACAGGATACAG 59 82339932 82339953 CAAGAAATCTAAGTCGACGAGC 60 NA Rattus norvegicus 81 Gpr137 ENSRNOG00000021145 ENSRNOT00000028707 1 1 1 80 1 222195350 222195488 AACGTATCTGACCAGGCAG 60 222195288 222195306 CCACACGAAGAGGATGAGG 60 NA Rattus norvegicus 81 Rn60_X_0651.2 ENSRNOG00000051255 ENSRNOT00000076745 3 1 1 60 X 64157329 64157348 CATCCCTAGCAACCTATCCA 59 64157288 64157306 GAGCATGTTGCCATGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000051498 1 1 2 80 2 241445530 241445549 GAGCCAATGATGATCTTGCC 60 241442384 241445488 ACTCCTGTTAAGGACTGCAC 60 NA Rattus norvegicus 81 Rab3a ENSRNOG00000019433 ENSRNOT00000026391 1 1 1 83 16 20436538 20436556 GAACAAGTGCGACATGGAG 59 20435884 20436491 AAGAACTCAAAGCCCAGGT 59 NA Rattus norvegicus 81 Slc41a1 ENSRNOG00000042320 ENSRNOT00000063882 3 1 1 84 13 48619627 48619645 CTTTAGCATCCCACATGCC 59 48619692 48619853 CATGATCATACCCAGGACCA 59 NA Rattus norvegicus 81 Kpna3 ENSRNOG00000014945 ENSRNOT00000034400 3 1 1 80 15 41716546 41720315 GTCTAGAAAGGGATGATAACCCT 59 41716488 41716506 GTGCAGAAGTTCCTGATGC 59 NA Rattus norvegicus 81 Olr984 ENSRNOG00000051632 ENSRNOT00000078290 3 1 1 60 7 4713935 4713953 ACTGCCATGTCCTATGACC 59 4713976 4713995 TGATGGTTGTGTAGTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a5 ENSRNOG00000018822 ENSRNOT00000025576 2 1 1 80 16 20301360 20301378 AAGACCTCATCAAGCCGAG 60 20301421 20301519 CGTAGATGAATGAGAGCCCT 59 NA Rattus norvegicus 81 Rn60_X_0690.1 ENSRNOG00000051240 ENSRNOT00000075845 3 1 1 60 X 68089070 68089091 GATTCTTGGGATTCCGATACAG 59 68089031 68089049 CAAGGCAACAAGTCCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr779 ENSRNOG00000050125 ENSRNOT00000046310 2 1 1 60 3 103128149 103128167 TGCTCTTTGTGTTCTCCTC 57 103128107 103128125 ACGATGAGTGAGTTTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr331 ENSRNOG00000030201 ENSRNOT00000044115 1 1 1 60 1 229481041 229481061 TCCTTTGGTTTACAGTCTGAG 58 229481080 229481101 CTTCTTTAGCCTCTTTACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uvssa ENSRNOG00000005122 ENSRNOT00000006841 1 1 1 80 14 82649354 82649372 AAGAGGAGAAGCAGAAGCA 59 82648457 82649312 CAGACATTTCTTCCATCTCCC 59 NA Rattus norvegicus 81 RGD1560580 ENSRNOG00000029974 ENSRNOT00000048690 3 1 1 60 12 34651699 34651717 CTTCACAGCGATGAGAGGA 59 34651738 34651759 GAGGAAACACTACTTTGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfpm2 ENSRNOG00000004109 ENSRNOT00000029419 1 1 1 80 7 79738336 79804823 ATAATTCCTTGAAGACGAAGGC 59 79804864 79804882 CTTGCCAAGTCACATCCAG 59 NA Rattus norvegicus 81 Dap ENSRNOG00000010747 ENSRNOT00000014439 3 1 1 94 2 84287173 84287191 GGATTGTGCAGAAACACCC 60 84287249 84326563 TGTTGGTTTAGGAGGGCTG 60 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 2 2 2 80 1 197913603 197913759 TATCAATGGAGGTCCTTCCC 59 197913542 197913562 TTGTTGGGTGAAGATAAGGTC 58 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 1 2 2 80 13 105045621 105047220 CTATTGCTTTAGGAATGTGCAG 58 105045562 105045581 CATTTCCATCCAAGATCCCT 57 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 1 2 2 87 10 104455970 104455989 GCTGAAACTGAAAGAACTCC 57 104456039 104456439 CATCAGGACAGTAGCTGTG 58 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076334 1 2 3 86 13 77958975 77958993 CTGTCTACTTCAGTGCACC 58 77954861 77958925 TCTTTCTGCAACTCCTCCA 59 NA Rattus norvegicus 81 Flt1 ENSRNOG00000000940 ENSRNOT00000001248 1 1 1 80 12 9062198 9062218 ATACCTGCCTAAATCCACCTC 59 9062260 9080855 AAAGGACTCCCTGCATCAC 60 NA Rattus norvegicus 81 Bspry ENSRNOG00000015105 ENSRNOT00000020366 2 1 1 81 5 78346827 78348320 AGCTGATTCAGATGGAGCA 59 78353933 78353951 AATTTCTCCGACTCCTGGG 59 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873,ENSRNOT00000019511 3 2 2 80 16 3020309 3020329 AAGATTCCCTGATTGACAGCT 60 3020370 3023052 AAACATGGAGTTTCACACCC 59 NA Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 2 2 2 80 18 51845895 51859195 TGGACACTAGTGTCATTTAGGT 59 51845836 51845856 AATGAGGAGAATCACCCTCTG 59 NA Rattus norvegicus 81 LOC685596 ENSRNOG00000032204 ENSRNOT00000046035 2 1 1 60 1 94718461 94718482 CGGAAGTGGTATTATAATGCAG 57 94718501 94718521 TTGTGTCATCTCGCATTAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf139 ENSRNOG00000008987 ENSRNOT00000011891 2 1 1 80 7 98770942 98770961 ACTCCTACTACGATTCCAGC 59 98771001 98779485 TGGATACAACTATACCGAGGAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040,ENSRNOT00000067610 3 2 6 81 5 48012403 48013303 CAAGCACAAGGTCTTCAGC 60 48013346 48013366 GAGGATAAGGTCTGAGAAGCC 60 NA Rattus norvegicus 81 Fzd4 ENSRNOG00000016848 ENSRNOT00000023205 2 1 1 103 1 153589842 153589860 AACTTAGTGGGACACGAGC 60 153589926 153592002 CAAAGGAAGAACTGCAGCTG 60 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 2 2 2 80 7 143387081 143388137 GTGCTGAAGAAGGATGTGG 59 143387019 143387039 GATGTCATCTGTCATGGAGTC 58 NA Rattus norvegicus 81 Tuba4a ENSRNOG00000003597 ENSRNOT00000004797 1 1 1 80 9 82417008 82417284 GCCTACTGTAATTGATGAGATCC 59 82416950 82416970 TCTTCCTTCCCAGTGATAAGC 60 NA Rattus norvegicus 81 Tuba4a ENSRNOG00000003597 ENSRNOT00000004797 2 1 1 80 9 82417323 82417342 TCTTCTGTGAAACTGGAGCT 59 82417008 82417284 GGATCTCATCAATTACAGTAGGC 59 NA Rattus norvegicus 81 Nup210l ENSRNOG00000055790 ENSRNOT00000087063 2 1 1 80 2 189562893 189567160 AGAGCCTAGAGGTCTTCCA 59 189567203 189567222 GAGTTACGCTTGTTGTGAGG 59 NA Rattus norvegicus 81 Ppif ENSRNOG00000010558 ENSRNOT00000014382 1 1 1 82 16 1979403 1980528 GTGCTGGAGTTAAAGGCAG 59 1981052 1981070 TAGCCAAAGCCCTTCTCAC 60 NA Rattus norvegicus 81 LOC498084 ENSRNOG00000038987 ENSRNOT00000046605 3 1 1 85 11 63170203 63177106 GTTGGAAGAGGGATGAAGC 58 63177155 63177173 TTCTGTCTTGTCGAAAGCC 58 NA Rattus norvegicus 81 Olr1068 ENSRNOG00000050013 ENSRNOT00000041565 1 1 1 60 7 9427442 9427460 TTCTGCTGGGATTCTGGAC 59 9427400 9427421 AGCAAGAACAGTAAGAACAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pak2 ENSRNOG00000048597 ENSRNOT00000071060 1 1 1 80 11 72843797 72844806 GAACACCAGCACTGAACAC 59 72844850 72844868 GAGCAGCATCTTCATCGTC 59 NA Rattus norvegicus 81 Sh2d2a ENSRNOG00000013294 ENSRNOT00000017798 1 1 1 89 2 187220303 187220321 ATGGGTTCAGAAGACCCAG 59 187220374 187220955 CTCTCAGCTTCCCTTCTGG 60 NA Rattus norvegicus 81 Sh3yl1 ENSRNOG00000005522 ENSRNOT00000068208 1 1 1 96 6 49860403 49860421 CAGAAGCAAAGAAGGCTGC 60 49860481 49863329 TTTGCAATCACATGGGCAG 59 NA Rattus norvegicus 81 Ccny ENSRNOG00000018123 ENSRNOT00000024545 3 1 1 80 17 62366035 62366145 TCCACCCTCTTTCGAAATCC 60 62365974 62365993 GAACGAACCGGTAAATCTGC 60 NA Rattus norvegicus 81 Traf4 ENSRNOG00000013169 ENSRNOT00000018468 3 1 1 108 10 65421733 65424591 GAGTTCCTCAGTGAAGGAGTC 60 65420870 65420888 TAGCCAAGCCTAACACCTG 59 NA Rattus norvegicus 81 Papln ENSRNOG00000009448 ENSRNOT00000012757 2 1 1 80 6 107267712 107267979 CTCCTCTAACAGGTACCAGC 59 107268019 107268040 CTATAGATGCCAGCATCTTCTG 59 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000089921 1 1 2 62 19 37886056 37886074 TATACCGGCAGATCCTCAG 58 37903387 37903405 TAGATACACTAGGCCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000089921 2 1 2 63 19 37886056 37886074 TATACCGGCAGATCCTCAG 58 37903387 37903406 TTAGATACACTAGGCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Spink10 ENSRNOG00000043250 ENSRNOT00000039466 3 1 1 96 18 57971021 57971850 TTGTACTCCGAAACTGCCT 59 57973341 57973361 ACTCTTTGGTACACTTGTCGA 59 NA Rattus norvegicus 81 Zkscan5 ENSRNOG00000059552 ENSRNOT00000090073 1 1 1 80 12 11163994 11164012 GACCAGTCCCAGAAGTCTC 59 11157986 11163952 CTTGGGTTCATAATCCACAGG 59 NA Rattus norvegicus 81 Dscaml1 ENSRNOG00000016502 ENSRNOT00000022476 1 1 1 80 8 50045555 50045573 GAAAGATGTCCGACTGCCT 60 50045617 50045968 GCTGAGTCTTCACTGTCCT 59 NA Rattus norvegicus 81 LOC103691893 ENSRNOG00000045581 ENSRNOT00000073088 3 1 1 60 3 124460887 124460906 GATTGGCATACGAAGGTCAC 59 124460846 124460865 CTGTTCTCCATCTGTCATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snapin ENSRNOG00000013356 ENSRNOT00000018830 1 1 1 80 2 189879351 189879924 CAGAATGCACAGGAACGAC 59 189879289 189879307 TGAATCCAGCATGGCTCTC 60 NA Rattus norvegicus 81 LOC684171 ENSRNOG00000050377 ENSRNOT00000072109 1 1 1 60 1 167811909 167811929 GCCTTATTGGAAAGATTGGAC 57 167811950 167811969 ACAGGAAAGACAACACAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scin ENSRNOG00000004498 ENSRNOT00000005988 3 1 1 80 6 59978635 59978653 AAGTTCCGGGAGAGTTCAC 59 59976704 59978593 AAATGAAGATCTGTTCCCACG 59 NA Rattus norvegicus 81 Ldhb ENSRNOG00000013000 ENSRNOT00000017965 1 1 1 80 4 176717607 176717629 CAACAAGATTACTGTAGTAGGCG 59 176713147 176717567 TCATCAGCCAGAGACTTCC 59 NA Rattus norvegicus 81 Oog3 ENSRNOG00000033000 ENSRNOT00000055741 3 1 1 82 5 99042176 99042194 CCACTGTCTCCAGGAACTC 59 99041448 99042130 GCTTCTTCAGGCAACTGAG 59 NA Rattus norvegicus 81 Acot2 ENSRNOG00000010134 ENSRNOT00000013515 1 1 1 72 6 107463729 107463747 AGAAGCCGTGAACTACCTG 59 107466075 107466093 TTTGGAAATCCCAAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Actg2 ENSRNOG00000029401 ENSRNOT00000042699 1 1 1 80 4 115218317 115221475 CCTTCATTGGCATGGAGTC 59 115218255 115218273 CCTTGCGGATGTCAATGTC 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 1 3 3 107 13 48801367 48804635 CTCTTCCAGTTCCCTTCTG 57 48804705 48804724 TTATGTCTTCTGCAGGTCTG 57 NA Rattus norvegicus 81 LOC100362344 ENSRNOG00000036910 ENSRNOT00000055433 3 1 1 60 4 184096228 184096248 GAAGCTCCATATTTGTTCCAG 57 184096188 184096206 TGACTCTCACATCCCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 3 3 3 82 11 70356313 70356331 TACCCTAGCTAGCATGGGT 60 70349285 70356268 ATGCTGATCCGAGGTAAAGG 60 NA Rattus norvegicus 81 Rfxank ENSRNOG00000033318 ENSRNOT00000041221 1 1 1 83 16 21034196 21034214 CTTGAAGCACTCCACAACC 59 21034261 21034870 ATAGACAGGGAGTCCAGGG 60 NA Rattus norvegicus 81 Ttc34 ENSRNOG00000024526 ENSRNOT00000037211 2 1 1 86 5 172264585 172264606 AGGCACTGATTAGAATCAATGC 59 172264653 172265465 CCTCCTGATACTTGCCCAG 60 NA Rattus norvegicus 81 Rn60_13_0837.3 ENSRNOG00000061854 ENSRNOT00000088806 1 1 1 60 13 78725344 78725362 ACTAAGAGACCAGGGAGAG 57 78725386 78725404 CCATCTACTGAGCAAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076401,ENSRNOT00000075838,ENSRNOT00000003689 1 3 5 98 13 78771701 78771719 AAAGCTAGACCACCTGAGC 59 78772321 78772340 ACCATCTGAATTGGTTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Awat2 ENSRNOG00000003030 ENSRNOT00000076097 1 1 1 80 X 70227533 70256683 ACCAGACAGTCATCACTGTG 60 70227472 70227490 GCATCAACACAGTGACAGG 59 NA Rattus norvegicus 81 Matn1 ENSRNOG00000010932 ENSRNOT00000014666 1 1 1 80 5 149083559 149083577 GCATCGTCTTCACTGATGG 59 149083620 149084192 ACATCTTAAAGCCAAGGTCC 58 NA Rattus norvegicus 81 Hist1h2ak ENSRNOG00000052594 ENSRNOT00000080119 2 1 1 160 17 44841141 44841159 AGAAGACGCGTATCATCCC 59 44840999 44841017 CTTAGCTTTGTGGTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipf ENSRNOG00000019448 ENSRNOT00000027969 3 1 1 80 1 252289304 252289324 AGTCGAGGAAATACATGGTCC 60 252289365 252290446 TTCATCAAAGCTGAAAGCCC 59 NA Rattus norvegicus 81 Zer1 ENSRNOG00000025832 ENSRNOT00000035002 1 1 1 80 3 8675774 8675793 TTGTGCTCTACAACATGGAC 58 8675446 8675731 TCAGGATCTTACTCCGCAG 59 NA Rattus norvegicus 81 AABR07058199.1 ENSRNOG00000054576 ENSRNOT00000084764 3 1 1 80 7 104480852 104480870 TATCCCAAAGGGTGCAGTG 60 104478286 104480808 GCAGAAAGGAGAATGGCAC 59 NA Rattus norvegicus 81 Atp8b1 ENSRNOG00000024952 ENSRNOT00000038652 2 1 1 80 18 60063640 60063659 ATTCTGCTATTGTCCAGCTC 58 60062333 60063599 CTTCAAATTGGTTTCTCCGTC 58 NA Rattus norvegicus 81 Rad51ap1 ENSRNOG00000059878 ENSRNOT00000088333 3 1 1 80 4 159474126 159474144 GGAGGAAGCTCTCAGAAGG 59 159473033 159474084 TTTCTGAATCTTCACCAGTCG 58 NA Rattus norvegicus 81 Dyrk2 ENSRNOG00000007821 ENSRNOT00000010283 2 1 1 88 7 61791950 61798685 ACTACATCCCACACGATTGG 60 61791881 61791899 TGCTGAACCTGGATCTGTC 59 NA InUTR Rattus norvegicus 81 Tmc8 ENSRNOG00000046086 ENSRNOT00000075047 1 1 1 80 10 106793085 106793344 TTCTACATCAAGAAGTACACCC 58 106793385 106793403 GAAGAAGATGGAGCTGGAG 57 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000089991 1 1 2 80 7 92241634 92241655 TACGACTGGTCTATGACAAGTG 60 92241693 92244876 CCACATATGGAATCAGTTGCTC 60 NA Rattus norvegicus 81 Iba57 ENSRNOG00000022725 ENSRNOT00000036940 3 1 1 88 10 45508265 45514530 TTGTGTATGGACTCCCAGAG 59 45508196 45508214 GTACTTCTGTAGGGTGCCC 60 NA Rattus norvegicus 81 LOC691037 ENSRNOG00000038215 ENSRNOT00000058186 2 1 1 60 4 99168287 99168305 AGAAAGCAGAAAGCGAGAG 58 99168328 99168347 AATCCTCTGCCATCTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909678 ENSRNOG00000049858 ENSRNOT00000075005 1 1 1 81 4 82270517 82271525 CAGTTCAGGACCCGATAGG 59 82270454 82270474 GAAGTGGAATTCCTTCTCCAG 58 NA Rattus norvegicus 81 Gdf1 ENSRNOG00000020142 ENSRNOT00000027275 3 1 1 80 16 20853139 20853157 CGTGAACTGGAAGACTTGC 59 20847605 20853095 CCTTAGAGGCTTCTCAGCT 59 NA InUTR Rattus norvegicus 81 Rpl23a ENSRNOG00000023344 ENSRNOT00000035657 1 1 1 80 10 65441581 65441817 ATACTCTGATACGGCCTGAC 59 65441520 65441538 TGTTGGCAACATCTAGAGC 58 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264,ENSRNOT00000003946 1 2 2 82 X 70445542 70445560 CCTCACAGCCTTACAGGAG 60 70445606 70445728 GCAGGTTAGCAACCATCTG 59 NA Rattus norvegicus 81 Trim32 ENSRNOG00000010303 ENSRNOT00000013675 3 1 1 120 5 81431654 81439361 CAGCAGGAATTTGACACTGG 60 81439444 81439462 ATCCAGGTTCAGGTGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC683884 ENSRNOG00000018129 ENSRNOT00000024471 2 1 1 86 1 192046267 192048692 GTGTATGACTAAAGTATCAGATGCC 60 192046205 192046224 CCTATGTGGTTCACTCTTGC 59 NA InUTR Rattus norvegicus 81 Ror2 ENSRNOG00000053232 ENSRNOT00000090782 2 1 1 85 17 11987373 11987391 TGAAGTGGAGGACTCAGAG 58 11987438 12113452 GAAAGTAGCCTTTCAGAGTGG 59 NA Rattus norvegicus 81 Ror2 ENSRNOG00000053232 ENSRNOT00000090782 3 1 1 86 17 11987374 11987392 GAAGTGGAGGACTCAGAGG 59 11987439 12113454 CAGAAAGTAGCCTTTCAGAGTG 59 NA Rattus norvegicus 81 Cln5 ENSRNOG00000055439 ENSRNOT00000077597 1 1 1 80 2 66607375 66607398 TTGGTTTCTACCTATGAAACCC 58 66601159 66601181 GTAAATATCGTATGTCGGGTAGG 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 2 2 2 80 10 109616769 109618498 CAGAACCTGTACTTTAACTGCAG 60 109618538 109618556 TTCCTGGAGGTTGATGCAG 60 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 2 2 2 80 1 141566233 141566832 TGATGGAGCAGTACAACGA 59 141566171 141566190 CAACAACGAGATCCCTACAC 58 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000080260 3 2 3 89 7 143491700 143491719 GCTGATGAACGTTAAGCTGG 60 143490094 143491648 AACTCTCCAGACAACCTGC 60 NA Rattus norvegicus 81 Mboat2 ENSRNOG00000061050 ENSRNOT00000082657 1 1 1 80 6 44126563 44126585 GTCTACCCAGGATACTATCTGAC 59 44126622 44128695 CCTAAAGTTATTCCTCACAGCC 59 NA Rattus norvegicus 81 Omg ENSRNOG00000014107 ENSRNOT00000018891 3 1 1 105 10 66847335 66848252 CGACATTATGGCTTTGATGGA 59 66847250 66847269 ACATTGGAGAGGACAAATGC 59 NA InUTR Rattus norvegicus 81 Raly ENSRNOG00000017405 ENSRNOT00000023429,ENSRNOT00000080485 2 2 2 80 3 150382691 150384235 GCCAAGATCAAGTTAAAGAGC 58 150384277 150384295 AAGGGCATCAATGTTGGAC 58 NA Rattus norvegicus 81 AABR07013464.1 ENSRNOG00000023965 ENSRNOT00000041583 3 1 1 80 2 238303307 238311207 TATATGCAAGAGGGCAAGC 58 238303245 238303264 GGGATATTTCATCACTCGCT 58 NA Rattus norvegicus 81 Pappa ENSRNOG00000033527 ENSRNOT00000040898 3 1 1 80 5 80978182 80985474 ATGAGCTATGCAGATGACGA 59 80985517 80985535 TACGAGGTCCAGGTAACAG 58 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 2 1 1 92 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104821353 104884851 TATACAGTAATGCACAGCCCA 59 NA DesignNoJunction Rattus norvegicus 81 Casp4 ENSRNOG00000033697 ENSRNOT00000061973 1 1 1 80 8 2641845 2647691 CTACTCTACAACACCACACCA 60 2647731 2647751 AAGCAGGAAATGAGTTTGGAG 59 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 2 2 2 80 3 113261217 113261236 ACCTTATCCTACAGAGTGGT 57 113261279 113261516 TAAGCAACTGGGCAATCTC 58 NA Rattus norvegicus 81 Olr262 ENSRNOG00000009748 ENSRNOT00000012919 2 1 1 60 1 172615832 172615851 TTATGTGATGCCCAAGTCCA 59 172615791 172615809 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srcin1 ENSRNOG00000011475 ENSRNOT00000016070 1 1 1 80 10 85469508 85469628 GAACTCAAGGCTCATTTCCC 59 85469447 85469465 CAGAAACTTGACTGCCTCC 59 NA Rattus norvegicus 81 Serpinb6 ENSRNOG00000017962 ENSRNOT00000024161 3 1 1 81 17 32204406 32204425 CAAAGGAAACTGGGACAAGC 60 32204468 32208642 AGGTTTCTCCTCAGTCTTGC 60 NA Rattus norvegicus 81 Zfp458 ENSRNOG00000017986 ENSRNOT00000032909 3 1 1 89 2 86975601 86975619 ATACCTTGGTCCTGCTCAG 59 86975671 86976141 TTAGAGGAAGCAAGACCCAG 59 NA InUTR Rattus norvegicus 81 Slc17a8 ENSRNOG00000007581 ENSRNOT00000010207 2 1 1 80 7 30230678 30232242 TTTGCAATAAGTAAGGTGGGTC 59 30230619 30230637 CAGTTGTCCTCCAATGGGT 60 NA Rattus norvegicus 81 Slc43a2 ENSRNOG00000003835 ENSRNOT00000005100 1 1 1 80 10 63707425 63707446 TACGACTCATCTTCTACATGGG 59 63707487 63710679 AGAGGGCAACTGTCTTCTG 59 NA Rattus norvegicus 81 Lancl2 ENSRNOG00000006810 ENSRNOT00000008948 1 1 1 80 4 88540304 88540324 ACCTGTATGCCTTACTGTACC 59 88539352 88540267 CAGTGACTACCTCTTTAATAGCTG 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923,ENSRNOT00000012640 2 2 2 80 7 143223167 143224857 TGGTACCAGACCAAGTATGAG 59 143223107 143223126 GATCTCCTGTTTGGTGTTGC 60 NA Rattus norvegicus 81 Cd37 ENSRNOG00000020699 ENSRNOT00000066834 2 1 1 80 1 101235407 101235516 TTCTTCTTTGTACTAGGAGGCC 60 101235348 101235366 CACAAAGGACACGAAGCTG 60 NA Rattus norvegicus 81 Birc3 ENSRNOG00000005731 ENSRNOT00000090774,ENSRNOT00000007702 3 2 2 80 8 6057030 6057049 TCAGAATCAAAGGCCAAGAG 58 6056214 6056989 CTGACGTAGATAATAGCTGCT 57 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942,ENSRNOT00000090985 1 2 2 60 8 50530567 50530586 GGAGTCTGATATAGCTGTGG 57 50529556 50529574 TTTCAGGGATTTGAAGCGA 57 NA DesignNoJunction Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942,ENSRNOT00000090985 2 2 2 60 8 50530566 50530586 GGAGTCTGATATAGCTGTGGT 59 50529556 50529574 TTTCAGGGATTTGAAGCGA 57 NA DesignNoJunction Rattus norvegicus 81 Pon2 ENSRNOG00000009112 ENSRNOT00000036460 1 1 1 80 4 30349403 30351671 CCTTCCAAGTGTGAATGATGTC 60 30349344 30349363 AAAGGGTCGGAGAAGTAGTG 59 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 1 2 2 80 15 18664542 18675303 AATCTATTATTGGTACTGGCGG 58 18664483 18664505 GAGTAACAGAACTGATAGTCCTC 58 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000055427 1 1 2 80 10 85280533 85280551 CAGGCTCCTACCTCAACAG 60 85278940 85280491 TCAACTCATCCCGAATATCCC 60 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 1 1 1 97 5 169507809 169510110 TTTGAGCAGTTCCTCCAGG 60 169510171 169510189 GTGATCTTGCTCTTGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Abce1 ENSRNOG00000018345 ENSRNOT00000024753 1 1 1 80 19 31880379 31880397 ACCTTGATGTCAAGCAACG 59 31880436 31883055 CCACCACAATGATGTATCTATCTG 59 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 3 2 2 80 6 18919635 18930042 TGCAATTGTAGTTACTCCTCC 58 18930084 18930102 TGCTTCTTTACTGCTCTCC 57 NA Rattus norvegicus 81 Olr194 ENSRNOG00000046579 ENSRNOT00000042936 1 1 1 60 1 170034030 170034048 TCTATCTCCTTGTGCCACC 59 170033988 170034006 ATCTGTCGAGTCTTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683422 ENSRNOG00000047632 ENSRNOT00000072438 1 1 1 82 15 47470999 47472106 TCGACCAAATAAACAACGCT 59 47472150 47472169 CACTTTCTCATGCTTCACGT 59 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 1 2 2 138 4 151513686 151513704 AGCACATGTCCTACATCGG 60 151508269 151513584 TCTCGGCTACCTATCTGCA 60 NA Rattus norvegicus 81 Hmx3 ENSRNOG00000020637 ENSRNOT00000028007 1 1 1 139 1 203510124 203510745 CCAGAAGCCTCTGAGAAGG 60 203510848 203510866 TCCAGAATGATCTCGTCCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC687119 ENSRNOG00000049778 ENSRNOT00000073565 3 1 1 60 1 173048507 173048525 GTCTTGTGATTCCCATGCT 58 173048547 173048567 TCCTTTACCTCCGTGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp410 ENSRNOG00000010985 ENSRNOT00000014738 3 1 1 80 6 108037240 108038113 GAATCCAAACCAGAGCTCCT 60 108038154 108038174 AGCTTCTGATTCTACTAGCCC 59 NA Rattus norvegicus 81 Olr85 ENSRNOG00000015785 ENSRNOT00000021131 2 1 1 60 1 168348817 168348835 GGCTTATGACCGCTATGTG 59 168348859 168348877 GTTGGTGAGGATGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pikfyve ENSRNOG00000015158 ENSRNOT00000020447 2 1 1 80 9 71966841 71967097 TTGCCTAACGAACAAACCA 58 71967141 71967159 TCCTCTGAGCTTGATTGTG 57 NA Rattus norvegicus 81 AABR07061044.1 ENSRNOG00000046592 ENSRNOT00000074206 3 1 1 60 4 103115444 103115464 CTATCTCTTGCCGGTCTAGTC 60 103115404 103115424 CAATGCAAGTAGGTGTTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 2 2 2 80 3 2936816 2937530 TATACGTTTGACTACCAAGGC 58 2936756 2936777 GCTTTCCAAATCTATGATGGTG 58 NA Rattus norvegicus 81 Fam229a ENSRNOG00000042787 ENSRNOT00000064855 2 1 1 60 5 147693320 147693338 AGAAATCTCCGGTTGTCAG 57 147693359 147693380 AGAGAAACGAAGATGTCATTGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 3 2 2 80 7 143464075 143466097 CAAACCAAGTACCAAGAGCT 58 143464014 143464033 CTCTGAGATCTCCATCTTGC 58 NA Rattus norvegicus 81 Cyp17a1 ENSRNOG00000020035 ENSRNOT00000027160 3 1 1 80 1 266422589 266423010 GATCAGTTCATGCCTGAACG 59 266422528 266422546 TCCGAAGGGCAAGTAACTC 59 NA Rattus norvegicus 81 Ppard ENSRNOG00000000503 ENSRNOT00000042539,ENSRNOT00000083109 2 2 2 96 20 7880382 7880401 GCACATCTACAATGCCTACC 59 7880460 7880582 GATGAAGGGTGCGTTATGG 59 NA Rattus norvegicus 81 Cldn1 ENSRNOG00000001926 ENSRNOT00000002640 2 1 1 81 11 77815605 77823965 CTGAATCTGAATAGTACTTTGCAGG 60 77824003 77824022 ACACAAAGATTGCGATCAGC 60 NA Rattus norvegicus 81 Mir6331 ENSRNOG00000049586 ENSRNOT00000071790 1 1 1 60 6 133878619 133878640 TAGTTCTTTGTGCTTGGTTTGG 60 133878661 133878679 AACAGCAACAACAGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560455 ENSRNOG00000037838 ENSRNOT00000049779 3 1 1 80 X 78259565 78281484 GGAGACTTCAGTGAGAAATCAC 59 78281520 78281543 GTTCTGTTACTTCCCATCTTTAGC 60 NA InUTR Rattus norvegicus 81 Slitrk3 ENSRNOG00000009821 ENSRNOT00000013009 3 1 1 80 2 170460451 170460469 GAACCTCGGAGATCCTGAG 59 170455658 170455677 AGCATCTCAGTTATGGTTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mpp7 ENSRNOG00000018760 ENSRNOT00000025458 1 1 1 80 17 60244686 60246381 AGCCTCATACAGTGAAGCA 59 60246425 60246443 AACGCTCTATGGATGGAGG 59 NA Rattus norvegicus 81 Mpp7 ENSRNOG00000018760 ENSRNOT00000025458 3 1 1 80 17 60180822 60180842 CTGACGATATTGATGACGAGG 59 60180883 60181983 TAATAGTAGCACCCAGAGGC 59 NA Rattus norvegicus 81 Epsti1 ENSRNOG00000009471 ENSRNOT00000012632 3 1 1 80 15 60175522 60175543 TTACTGGAAACTAAAGGACAGC 58 60175582 60182396 AGCATTATTTACCCTCCAGTG 58 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 2 2 2 91 7 97900306 97900324 AGACGGAAAGTAGCAACGA 59 97899432 97900253 CAGAGCTTTCTCGTATTCCTG 59 NA Rattus norvegicus 81 Tor1b ENSRNOG00000006435 ENSRNOT00000066618 1 1 1 93 3 9795963 9796428 CATCTTCCTCAGCAATGCAG 59 9796484 9796502 CTTCAGCTGGATCTCCTCC 59 NA Rattus norvegicus 81 LOC100362814 ENSRNOG00000011132 ENSRNOT00000015073 2 1 1 80 3 94120125 94120143 AAATGGAGCATGCTTTGGA 58 94112914 94120082 AGTTCTTCATCTGTTGCCTG 58 NA Rattus norvegicus 81 Selk ENSRNOG00000014624 ENSRNOT00000020284 1 1 1 95 16 6036022 6038718 CATCTCGAATGGTCAGGTG 58 6038775 6038795 ACCACAAATTCTGCTATTCCC 59 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000010171 3 1 2 80 7 142918579 142919389 TCATCACTGATCGACATGG 57 142919433 142919451 GTTCCTTCAGACAGCTAGC 58 NA Rattus norvegicus 81 Olr343 ENSRNOG00000029027 ENSRNOT00000049665 3 1 1 60 1 229804511 229804535 TTGTCTTCCTTCTCATCTATCTCAG 60 229804475 229804493 ATCAACCCTACCATTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912259 ENSRNOG00000046844 ENSRNOT00000070936 3 1 1 60 4 170079854 170079872 CGAGAAGCATCTGACTGAG 58 170079812 170079830 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd5 ENSRNOG00000033206 ENSRNOT00000041163 1 1 1 80 6 108092826 108092846 TGGACCTCAGTTACATCACAG 60 108091033 108092788 CTTTCTTTGTGAGCTGTAAGAGG 60 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262,ENSRNOT00000089538 3 2 2 80 10 66919914 66919933 ATCACTGCCAACCTTAACCT 59 66919975 66928043 GTTCTCCTTGTCGATTCCTG 58 NA Rattus norvegicus 81 Snx6 ENSRNOG00000005249 ENSRNOT00000007300 3 1 1 80 6 75631749 75633660 CAGCTAAGGACCTTCTCTATCG 60 75631690 75631708 CTCTTGCTTTGTCCAGTGC 60 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418,ENSRNOT00000078705 1 3 3 80 1 192533862 192539534 TCTGCAAAGGGCTAATGAC 58 192539577 192539596 CATGCTCCTTAATGTCTCGT 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 2 2 2 80 2 173472398 173475434 AACATCCACAGTTTCAGAAGAC 59 173472339 173472360 TTCAAGACATCGGTATTACCAG 58 NA Rattus norvegicus 81 Trim44 ENSRNOG00000005191 ENSRNOT00000007018 1 1 1 80 3 92186956 92225436 GATCCTAAAGTAACTCGAGACC 58 92186897 92186917 CTCATCAGCAATCACTTTCTG 57 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 3 3 3 80 X 70333252 70333271 CATCTCTTCCAGAGAAGCCT 59 70333311 70333993 AACCAGTTCCAAATACTTTGGC 60 NA Rattus norvegicus 81 Bhlhe40 ENSRNOG00000007152 ENSRNOT00000009563 2 1 1 80 4 140704627 140705555 CATCTCAAACTTACTACTTTGGGTC 60 140705593 140705611 TGTCAATGCTTTCACGTGC 60 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288,ENSRNOT00000092075 3 2 2 80 20 27988262 27988283 AAGGAAGAAAGTACTGTGAGCA 60 27988322 27989452 TGCCAATGATGAATTCACCAC 60 NA Rattus norvegicus 81 Mppe1 ENSRNOG00000018648 ENSRNOT00000025164 1 1 1 80 18 62955909 62960402 GGACAAATTGCGAAGGGAG 59 62955847 62955868 ATGAAGACTACTTCTGGTTGCA 60 NA Rattus norvegicus 81 AC129365.1 ENSRNOG00000061358 ENSRNOT00000088499 2 1 1 81 2 147479606 147479628 GCTTACCCTCAGCTAGAGTC 59 147479670 147479690 CGATTGCTTCAACTTTGTCTG 59 NA Rattus norvegicus 81 Nkx1-2 ENSRNOG00000017006 ENSRNOT00000022904 3 1 1 97 1 204605348 204605366 AATCCAATCGGGTCACAGG 60 204603750 204603768 GCTTCTTCCTCCTCTTCCG 60 NA DesignNoJunction Rattus norvegicus 81 Pgf ENSRNOG00000005650 ENSRNOT00000007790 2 1 1 80 6 108999025 109003097 TCAACAGAAATGGAAGTGGT 57 108998964 108998982 AATGTACACCAGCTTCTCC 57 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303,ENSRNOT00000075569 1 2 2 90 2 195678736 195678757 CATACGCCTATTACCTCTACTG 58 195678405 195678687 TCCTTGTAAGTGATGCTTCTG 58 NA Rattus norvegicus 81 Adh7 ENSRNOG00000032959 ENSRNOT00000015870 1 1 1 80 2 243512602 243512620 GATGCTCAGCTATGACCCA 59 243512664 243513361 TCTCTGCTCTTCCAACCAC 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015058 1 1 2 80 4 132157655 132160025 GAGGAAGAAGGAGGTTCCA 58 132157593 132157612 GTCCTTAAACATGCCAAACC 58 NA Rattus norvegicus 81 Sptssa ENSRNOG00000004292 ENSRNOT00000005825 2 1 1 80 6 75551468 75551489 GTTCTACTACCAGTACTTGCTG 58 75541250 75551428 ACCAGCATCGAATTGAACAC 59 NA Rattus norvegicus 81 LOC100912616 ENSRNOG00000002497 ENSRNOT00000003376 3 1 1 68 10 70999822 70999844 GTGGGAATGAACATAACCTATGC 60 71000489 71000507 TTTGGGACACATTCCAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Riiad1 ENSRNOG00000037310 ENSRNOT00000056449 2 1 1 80 2 195711837 195712386 GATTTCAAGATCCAGACTCGG 59 195711777 195711796 GAAGCTGCTAATGAGAAGGG 59 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000023407 ENSRNOT00000029531 2 1 1 144 1 31262392 31262410 GTCGATTGCCGATTTCTCC 59 31262025 31262043 CCTAGCAGGATCGAGAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1559644 ENSRNOG00000042808 ENSRNOT00000068281 1 1 1 80 5 162750984 162751003 ATTCCATCTACCCTGAAGCA 59 162742604 162750944 TATGGTTCCCAAAGTTATCAGG 58 NA Rattus norvegicus 81 MGC94891 ENSRNOG00000011243 ENSRNOT00000015010 1 1 1 80 1 52330839 52332850 GAGGAAAGACAGATTCTGTGG 59 52330779 52330797 TCCAAGCATTTCAGAGTCG 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 1 2 4 85 13 79042701 79042722 TGGACGTGAATCAATCTATCAG 58 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 LOC686677 ENSRNOG00000046185 ENSRNOT00000071281 3 1 1 60 3 76179942 76179962 TTCACACCTGACTACCATCAC 60 76179981 76180002 GGGTACAGAATACAGAAACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult1a1 ENSRNOG00000019342 ENSRNOT00000026186 1 1 1 80 1 198103233 198103251 GGCCATTGCAGAACTTCAC 60 198103086 198103191 CACTCATCCAGGTAGTACCAG 59 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 3 3 3 81 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900107 TTCTACTGATCATCTGGTCAGC 60 NA Rattus norvegicus 81 RGD1560069 ENSRNOG00000038041 ENSRNOT00000057891 1 1 1 60 15 82581896 82581914 GGGCAAATTCAAGAGACCC 59 82581854 82581872 GCATCCAGAGTATTGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191,ENSRNOT00000084075,ENSRNOT00000077175 1 3 3 80 7 141349514 141350277 AGCAGAGGCTCATCTACCT 60 141350319 141350339 TGTAGGAGTCGAAGAAATCCG 60 NA Rattus norvegicus 81 Poli ENSRNOG00000012111 ENSRNOT00000016189 1 1 1 80 18 65751581 65751603 CTGACAAACACTGTAATCGAGAG 60 65751161 65751547 CATAATTTCCTGTCCCTAACTTCTG 60 NA Rattus norvegicus 81 Olr537 ENSRNOG00000034047 ENSRNOT00000047002 2 1 1 60 3 74606889 74606907 TACTGCCCAGCTTCATTCC 60 74606847 74606867 GAAATCCAAGAAAGCCAAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550160 ENSRNOG00000037285 ENSRNOT00000056386 1 1 1 84 8 115273849 115274022 TGGGCTGTCTGTATAGTAAGG 59 115273785 115273806 CGTGATTCTGTTTCTGTTTCTG 58 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371,ENSRNOT00000041988 3 2 2 80 4 82783832 82789359 GGTTGGTATATTCAAGGTTGGA 58 82789398 82789418 ACATACTGTTCAGGCATAGGA 59 NA Rattus norvegicus 81 Rn60_12_0468.1 ENSRNOG00000030813 ENSRNOT00000043984 2 1 1 60 12 44890770 44890789 TGAAGTGCCTCAAGTCTCAG 60 44890811 44890830 TTGAAGTGGCTGTAGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab27b ENSRNOG00000012176 ENSRNOT00000016369 2 1 1 92 18 68494058 68494076 TCTTCAGAGATGCCATGGG 59 68490578 68494002 CCTGCAGTTGACTCATCCA 60 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 2 3 3 83 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509311 49509330 CTTCTTTGACCAGATGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066,ENSRNOT00000071760 2 2 2 60 X 73616741 73616760 ACATTGGCTTCCTGAATGAG 58 73616782 73616801 TAGAAGTCCTCATCCTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nat9 ENSRNOG00000003264 ENSRNOT00000004372 3 1 1 90 10 103734198 103734217 GATCGAGGTCATGATTGCAG 59 103733145 103733307 CTTCGTCACTCCGTAGGAC 60 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000046639 1 1 2 80 14 14379764 14382832 CAGCCATCCAAACATTTAACTG 59 14365125 14365143 GGTCATAACACCACACCTC 58 NA Rattus norvegicus 81 Rn60_5_1607.1 ENSRNOG00000027882 ENSRNOT00000036895 3 1 1 60 5 156898074 156898093 CAAGGAGATCCTGGGTACTG 59 156898111 156898134 GTCATCTATGATGTCATTAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc4 ENSRNOG00000012348 ENSRNOT00000016464 3 1 1 89 7 117392241 117392359 ACATTTATGTGCAGGTGCT 58 117392412 117392430 GTATCCCAGCATCCATCAC 58 NA Rattus norvegicus 81 RGD1565660 ENSRNOG00000046931 ENSRNOT00000050518 1 1 1 81 14 15681807 15681828 ATTCAATTGTCTCCAGCATCTC 59 15681870 15682648 CATCAGGCTCCTGAAGACC 60 NA Rattus norvegicus 81 Stbd1 ENSRNOG00000002218 ENSRNOT00000003020 3 1 1 91 14 16977997 16979487 CCAAAGCAGAGCATCTTCG 59 16977924 16977942 ATTCTGCAGTCTCTGTGCT 59 NA Rattus norvegicus 81 AC139950.1 ENSRNOG00000056011 ENSRNOT00000083110 1 1 1 60 6 78180231 78180251 GATCGTGTGGCTATACTTGTG 59 78180272 78180291 CAGCATGACAGATTGTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 2 2 2 80 5 33177436 33177456 CATGAATGGAAATCGGTCCAG 60 33176956 33177300 GAGTGATGTATCCCAGGGC 60 NA Rattus norvegicus 81 Tgfb3 ENSRNOG00000009867 ENSRNOT00000013516 1 1 1 80 6 109915907 109915925 ACTATGCCAACTTCTGCTC 58 109914882 109915863 TGTATAGTCCAAGCACCGT 58 NA Rattus norvegicus 81 Utp3 ENSRNOG00000003599 ENSRNOT00000004787 3 1 1 60 14 21155055 21155075 ATGATACAGACTACGGTTCCA 58 21155015 21155036 TCCTCTTCTACTTCTTGCTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688922 ENSRNOG00000027445 ENSRNOT00000035326 3 1 1 60 4 66336209 66336228 ATATCCGTTCTTGGCTCCTG 60 66336168 66336187 CCTATGTTTCCCACTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691931 ENSRNOG00000010875 ENSRNOT00000014510 1 1 1 234 2 232245271 232245289 CTTCTAGGGTTCCCGTCTG 59 232214781 232245073 GTTCTTCAGCATCCTGCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000064073 2 1 2 80 5 138482346 138482364 ATGCCCTTCTTCAACTCAG 57 138482406 138485636 CAGAAATATGCACTTTGCCTG 58 NA Rattus norvegicus 81 Rn60_7_1411.3 ENSRNOG00000054046 ENSRNOT00000083662 2 1 1 86 7 143239556 143239574 TGAAGGAGTACCAGGAGCT 60 143238806 143239507 CCTTTCAACCTTCCAACAGC 60 NA Rattus norvegicus 81 Etv5 ENSRNOG00000001785 ENSRNOT00000002445 2 1 1 80 11 82197646 82197793 TATGGTCCCAGGGAAATCTC 59 82197835 82197854 TCTGTGTCCACAAACTTCCT 59 NA Rattus norvegicus 81 Etv5 ENSRNOG00000001785 ENSRNOT00000002445 3 1 1 80 11 82197647 82197793 ATGGTCCCAGGGAAATCTC 59 82197836 82197855 ATCTGTGTCCACAAACTTCC 58 NA Rattus norvegicus 81 Actr8 ENSRNOG00000015280 ENSRNOT00000020750 3 1 1 80 16 6052083 6053193 AGGGAAGGACTAAATAAACCTG 58 6053232 6053252 TTTAGACCATATTGCCTGGTC 58 NA Rattus norvegicus 81 Fpr-rs6 ENSRNOG00000048014 ENSRNOT00000044825 1 1 1 60 1 86263347 86263368 CAAGCACTGTAACAACAATCTG 59 86263308 86263328 GCCATATAAGAGAAGTCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr-rs6 ENSRNOG00000048014 ENSRNOT00000044825 3 1 1 60 1 86263164 86263182 TCATTGCTATGGATCGCTG 58 86263122 86263141 GTTCGATAATTCTGAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amdhd1 ENSRNOG00000005266 ENSRNOT00000007331 2 1 1 80 7 34406183 34406202 ATATCTGACAGGGTCTGAGC 59 34403581 34406141 TTTATAAGCCCATCAGTGCC 58 NA Rattus norvegicus 81 Mir3556a ENSRNOG00000035458 ENSRNOT00000053581 3 1 1 88 4 58343946 58343964 ACCGATTTCAGATGGTGCT 59 58344016 58344034 CACATGACCTCTTGTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 1 2 2 80 Y 154320 154340 CTCACTTTCTTCAACTGGCTG 60 154377 154494 CCACAAGTCATCCATGATTATCTC 60 NA Rattus norvegicus 81 Mir196b ENSRNOG00000049258 ENSRNOT00000071717 2 1 1 60 4 82199105 82199124 AGGTAGTTTCCTGTTGTTGG 58 82199064 82199082 GTAATGAAGGCAGTGTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbx4 ENSRNOG00000010736 ENSRNOT00000014265 3 1 1 84 16 21308879 21308897 ATCTGAGCAACCCTTACCC 59 21306159 21308832 CAGTTAGAGACCTGGGACAC 60 NA Rattus norvegicus 81 Nppb ENSRNOG00000008141 ENSRNOT00000010779 3 1 1 126 5 164796398 164796638 AATCCACGATGCAGAAGCT 60 164796725 164796746 CTGTCTTGAGACCTAAGGACTC 60 NA Rattus norvegicus 81 Gdi2 ENSRNOG00000018091 ENSRNOT00000024952 3 1 1 80 17 70308621 70309163 CAGAACAGATGACTACTTAGACC 58 70308563 70308581 TATCTTGCCAAAGACTCGC 58 NA Rattus norvegicus 81 Rhox4g ENSRNOG00000027994 ENSRNOT00000034056 3 1 1 80 X 124562840 124566273 GCAGAAGAAAGAAGACATCTGG 59 124561464 124561484 TTCTCGTCTTCCCTTAAACCA 59 NA Rattus norvegicus 81 Ncbp2 ENSRNOG00000048589 ENSRNOT00000071483 2 1 1 80 11 72923731 72923751 GAAGATCATCATGGGTCTGGA 59 72921955 72923694 GCATCTGCTCTTGAATAGTATTCC 60 NA Rattus norvegicus 81 Lamtor4 ENSRNOG00000027028 ENSRNOT00000029279 1 1 1 83 12 19576927 19576945 TCAGAACTGGTCAGCACAG 60 19576992 19577301 ACCAAAGACCACAGACAGG 60 NA Rattus norvegicus 81 Scx ENSRNOG00000021812 ENSRNOT00000029768 2 1 1 224 7 117519615 117519633 TACATTTCTCACCTGGGCA 59 117519819 117520724 GTCTTTGCTCAACTTTCTCTG 58 NA DesignRelaxed Rattus norvegicus 81 Avpr1b ENSRNOG00000049261 ENSRNOT00000074204 1 1 1 110 13 48399616 48399635 AGATGACCTTTGTCATCGTG 58 48390825 48399546 CATTGGTAGAATCTTCATTGGG 57 NA Rattus norvegicus 81 Gatm ENSRNOG00000000168 ENSRNOT00000000181 3 1 1 80 3 114726693 114726714 CCCTTTAGAGGAAGTGATAGTG 58 114720954 114726653 TATGTATTGGCCTTCACCTC 57 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000080899 3 1 4 80 5 50231078 50239331 CAGGAGATGCTAAGAACAAACC 59 50231019 50231039 GCAGATAACCAATGTAAGCCA 59 NA InUTR Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000091985,ENSRNOT00000078701,ENSRNOT00000080317 1 6 6 80 19 33986154 33986497 GAACTGCTCAGCTTCTTGC 60 33986538 33986559 AGCTATTGGGTTTATGCAAGAG 59 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 2 3 3 80 18 56400027 56400275 CTAAGAACTGTGTTCACCGA 58 56400316 56400336 CAAAGTCACAGATCTTGACCA 58 NA Rattus norvegicus 81 Iqcf6 ENSRNOG00000042065 ENSRNOT00000068240 3 1 1 101 8 115328553 115328571 CTAAAGACCAAGGCCATGG 58 115328632 115329192 GGCTGTCTTCTCTAACTTTACAC 59 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 1 2 2 80 10 13862085 13862103 AGTGAATGTCCCATCCGAC 60 13862147 13862247 AGCATCTCTGACACATCGT 59 NA Rattus norvegicus 81 RGD1563222 ENSRNOG00000010963 ENSRNOT00000014767 1 1 1 80 3 94036397 94036418 GAGCTAGAGATCCGGATTAAGG 60 94036458 94037645 CAGGAATTTATAGCGCTGGG 59 NA Rattus norvegicus 81 Arl3 ENSRNOG00000019973 ENSRNOT00000027093 1 1 1 106 1 266314477 266314496 CAGACCATACTGGAGAAGCT 59 266298033 266300103 ATTCCGTTAGCTCCTGACC 59 NA Rattus norvegicus 81 Irx4 ENSRNOG00000012720 ENSRNOT00000016975 1 1 1 80 1 32636899 32637689 TACCCTTATGACAGGTACGG 58 32636838 32636856 CTTAAGTGTGCTGGTGGTC 59 NA Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 2 2 2 80 17 78778222 78779256 AATGAAAGGTTCTGGAGAACTG 59 78779296 78779315 CATTTGCATTGGGTTCTGAC 58 NA Rattus norvegicus 81 LOC100362149 ENSRNOG00000029627 ENSRNOT00000041813 1 1 1 60 3 22964554 22964572 GTGAAGGTTCCAAGACGTG 59 22964595 22964614 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpatch2l ENSRNOG00000010227 ENSRNOT00000013602 2 1 1 80 6 110096530 110096549 GGAAAGAAAGGATGGAGTGC 59 110096590 110109294 CACTGCTAGTTTCACTTTCGG 60 NA Rattus norvegicus 81 LOC100363427 ENSRNOG00000047502 ENSRNOT00000073793 2 1 1 60 15 19052772 19052792 GATCTCTATGGTTGGGAAGTC 58 19052732 19052755 CACCACCTTCATAAAGTGTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr558 ENSRNOG00000048361 ENSRNOT00000071725 3 1 1 60 3 75379844 75379862 CTGGTTATGAACCCAACGA 58 75379885 75379904 GAATACCACCAAGCCAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdga2 ENSRNOG00000000618 ENSRNOT00000000767 3 1 1 80 6 88748694 88748712 CTTCAGTGAGGAACGTGTG 59 88717675 88748650 TAATTGACGGAGAAGCGGT 59 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 3 2 2 80 3 82610412 82611683 AAAGCTGTCATCAAGGTAACC 59 82610352 82610370 CTGGTCTAGTGAGAGTCCG 59 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000039974,ENSRNOT00000085188 3 2 2 80 13 100324518 100324537 CAGAATTCACAGCTACCTGC 59 100318029 100324475 CTCTTGCAGTTGCCTTCTC 59 NA Rattus norvegicus 81 Klf7 ENSRNOG00000012961 ENSRNOT00000017901 1 1 1 83 9 70787215 70787375 ACAAGAAGAGGAGGGTCCA 60 70787150 70787168 TCTGGTGGGCCTTTAAGTG 60 NA Rattus norvegicus 81 Olr91 ENSRNOG00000048810 ENSRNOT00000075766 2 1 1 60 1 168447755 168447774 CTCTGTTTAGCCATTGCTCC 59 168447795 168447815 CCATAGAACATGAACCAAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zmym6nb ENSRNOG00000028083 ENSRNOT00000038888 3 1 1 81 5 145188414 145190197 TGTCACAACAAATGAAAGCC 58 145190241 145190259 ATAGGATCTGGCTGGTAGC 58 NA Rattus norvegicus 81 Tppp3 ENSRNOG00000016890 ENSRNOT00000022863 2 1 1 88 19 37425125 37425258 CTTCTCCAAAGTCAAGGCA 58 37425055 37425073 TGAACCTCTTTGTTGCCAG 58 NA Rattus norvegicus 81 Ttc5 ENSRNOG00000008850 ENSRNOT00000011741 3 1 1 80 15 27708325 27708344 AGGTGTACTGGAAGAAAGGA 58 27707979 27708282 AGACCTTGTTCTTGCAGTG 58 NA Rattus norvegicus 81 Bpifb1 ENSRNOG00000015468 ENSRNOT00000055342 3 1 1 80 3 149682971 149682989 GATAAGTCTGGCAGCATCC 58 149683033 149683649 AGAGGTGACCTTCATCCAG 58 NA Rattus norvegicus 81 Eif1ad ENSRNOG00000020463 ENSRNOT00000027753 3 1 1 86 1 220748078 220748096 CAAGAGGAAGCATGTGGTG 59 220748145 220748310 GGAGTCCTGAGGACTTTCAC 60 NA Rattus norvegicus 81 Ikbke ENSRNOG00000025100 ENSRNOT00000038151 2 1 1 80 13 48034050 48034711 CTGGCCAAGATGTTTGATCAG 60 48033990 48034008 AGTTGCCATAGGTTGTGGT 59 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 1 2 2 80 2 235345530 235345940 TGGCTTCTACAGAAGTAGGG 59 235345983 235346001 ATTAGGGCAGTTCCTCTCC 59 NA Rattus norvegicus 81 Zdhhc11 ENSRNOG00000039743 ENSRNOT00000060971 1 1 1 80 1 31926339 31934915 CTGTATCCTTTGTACTAGTGATGG 59 31926282 31926300 CTGGGTCGATGGTAATTGC 59 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484,ENSRNOT00000060311 2 2 2 80 3 94626695 94626714 TAAGGAGACTGTGCTCAAGG 59 94624462 94626652 ATTCGGGACTCCATGATCC 59 NA Rattus norvegicus 81 Xrcc1 ENSRNOG00000019915 ENSRNOT00000027057 2 1 1 80 1 81434889 81434908 GGGTCTAGAAGACAAGAAGC 58 81434951 81435134 CTAGGAACAGGCAACTTGG 58 NA Rattus norvegicus 81 Ddhd1 ENSRNOG00000009481 ENSRNOT00000032704 3 1 1 81 15 19985391 19985409 TGAGGGACATGCTCAACAG 60 19981020 19985348 AGGCCTTTAACTAGCTCATCC 60 NA Rattus norvegicus 81 Med10 ENSRNOG00000017150 ENSRNOT00000023161 1 1 1 89 1 36112806 36112824 GTTCGTGGAGAACATTCGG 59 36111177 36112753 ATGAAGTTCAGCTTCTGGC 58 NA Rattus norvegicus 81 Med10 ENSRNOG00000017150 ENSRNOT00000023161 2 1 1 89 1 36112806 36112824 GTTCGTGGAGAACATTCGG 59 36111177 36112754 ATGAAGTTCAGCTTCTGGCT 60 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351,ENSRNOT00000080083 3 2 2 80 10 46989299 46989317 TGTATGTGGGACTCACCTC 58 46989136 46989258 CCATGGAATCATAACCTTCCAC 59 NA Rattus norvegicus 81 LOC100912186 ENSRNOG00000050613 ENSRNOT00000071489 1 1 1 60 4 1611810 1611830 TTATGTACCTAAAGCCCTCCT 58 1611851 1611870 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362601 ENSRNOG00000028909 ENSRNOT00000049011 1 1 1 96 1 225761762 225764646 GCTATGAAACTAATGCTGGC 57 225764705 225764723 TCAAGTTCCTTCCTCAGGT 58 NA Rattus norvegicus 81 Necab2 ENSRNOG00000015084 ENSRNOT00000020341 2 1 1 80 19 52109008 52110847 AAAGGAACTGCTTCCATGTG 59 52110890 52110908 CCTCTGTCTCCCAGAACTC 59 NA Rattus norvegicus 81 Hoxa2 ENSRNOG00000005968 ENSRNOT00000008023 2 1 1 94 4 82133135 82133153 GGATGAAGGAGAAGAAGGC 58 82132416 82133077 TTCCAGGGATTCTTTGTGG 57 NA Rattus norvegicus 81 Dnpep ENSRNOG00000019772 ENSRNOT00000026799 2 1 1 80 9 82508802 82508916 TGTTCCATAAGGGTCCTGTG 60 82508741 82508760 CTCGAATCAGGGACTCAGAC 60 NA Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000076247,ENSRNOT00000021956 1 2 2 61 9 43131311 43131330 TTGGACCCTTCAAAGATGTG 58 43131120 43131138 TTGGGAACAACAGGTCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Vash1 ENSRNOG00000010457 ENSRNOT00000014017 1 1 1 80 6 110633681 110633699 ATCTGGCCAAGGAAATGAC 58 110633742 110634381 TGTTGGTGAGGTAAATTCCC 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 2 6 7 87 X 70645330 70646351 CTTTACAGCCATTGTACAGGG 59 70646400 70646418 AATGTAGTGCCCAGACTGG 59 NA Rattus norvegicus 81 Smek2 ENSRNOG00000003712 ENSRNOT00000005170 2 1 1 80 14 113609004 113609385 GAAACTGAACAGTGTGCCA 59 113609426 113609447 ATTTCTTCATCCTCTTCCAAGG 58 NA Rattus norvegicus 81 LOC100911427 ENSRNOG00000048437 ENSRNOT00000071906 2 1 1 82 9 88748584 88748603 CTACAGAGTATGCACACTGG 58 88747962 88748541 GTGAGCTATCACTCTGTTCTG 58 NA Rattus norvegicus 81 Rgag1 ENSRNOG00000049853 ENSRNOT00000074676 3 1 1 63 X 114377878 114377896 GAATGAACTGGGCTGTCAG 59 114378517 114378535 GTAGTAACAGCGTTTGGGA 58 NA DesignNoJunction Rattus norvegicus 81 LOC102557415 ENSRNOG00000030626 ENSRNOT00000066317 1 1 1 157 1 215450567 215450585 CAGGATGTGGGTCTTCCTG 60 215450337 215450423 TTAGATCTTGCATTGCGAGC 59 NA Rattus norvegicus 81 Atl1 ENSRNOG00000005063 ENSRNOT00000046085 1 1 1 80 6 92362320 92362814 TCCATGTTACAGGCCACAG 60 92362853 92362876 CTCCATCTTCTTGTTGTATGTGTC 60 NA Rattus norvegicus 81 Fig4 ENSRNOG00000000312 ENSRNOT00000000343 1 1 1 80 20 45968365 45969714 GCCTTACGACGAAGTTATCTG 59 45968305 45968325 TCAATCTCCTCTTCCCATCTG 59 NA Rattus norvegicus 81 Parp2 ENSRNOG00000008892 ENSRNOT00000011840 1 1 1 80 15 27747600 27747621 TGGACCAACACTATAGAAACCT 59 27747659 27747905 ACTGGGAAATCACTTTGAACTC 59 NA Rattus norvegicus 81 Fzr1 ENSRNOG00000004169 ENSRNOT00000005624 2 1 1 102 7 11209050 11209069 GGAGCGTAAACTTCCATAGG 58 11209209 11209355 TAAGCAAGGCCATCTTTGC 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 2 3 8 80 4 8194327 8194475 AATCAAGAGGGATATGACCGAC 60 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 3 3 8 80 4 8194329 8194476 CAATCAAGAGGGATATGACCG 58 8194269 8194287 AGGCCTAGCTCATTTAGGT 58 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076642,ENSRNOT00000084050,ENSRNOT00000068276 2 3 8 93 4 8212568 8214526 AAGGGTTAAGGGTTCAGCA 59 8212493 8212511 GTAGCGATCCATCCATGCT 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618 3 3 4 119 2 250224153 250224173 GGTTTCACTACATCAATGGCA 59 250219402 250224072 CTCAGCAGACCTTCTGGTC 60 NA Rattus norvegicus 81 Dhrs7b ENSRNOG00000005360 ENSRNOT00000077868,ENSRNOT00000066250,ENSRNOT00000065294 1 3 3 80 10 47095600 47099559 GGTCTCGGCAAAGAATGTG 59 47099602 47099621 AAGAGCCTTCACATTTCGTC 59 NA Rattus norvegicus 81 Sesn3 ENSRNOG00000008173 ENSRNOT00000011008 2 1 1 80 8 12861019 12862371 GCAACTTTGGGATTGTGGA 59 12862415 12862433 CTTCCCTGTCTTCCTGGAG 59 NA Rattus norvegicus 81 LOC102547811 ENSRNOG00000046212 ENSRNOT00000075433 3 1 1 80 19 389941 389963 ACTTAGAGATGGAGAACACTGAG 59 390001 390652 TGAGCAGGTTTCTAGAGAAGG 59 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 1 1 1 60 7 123088735 123088755 AAGTACGAGGCCAGTTCAG 59 123088693 123088711 CCCTTTAGCTCCCGATAGC 60 NA DesignNoJunction Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 2 1 1 67 7 123088735 123088755 AAGTACGAGGCCAGTTCAG 59 123088686 123088704 TTCTGAGCCCTTTAGCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ano3 ENSRNOG00000004731 ENSRNOT00000006349 3 1 1 80 3 101935561 101935580 GCAGCAGGATAGTCTATCAC 58 101934308 101935521 TGATAAGCTTACGAATACCCAC 58 NA Rattus norvegicus 81 Vwa5b2 ENSRNOG00000001707 ENSRNOT00000037612 2 1 1 80 11 83996685 83996788 GAGACTCAGAGCAGACAGG 59 83996623 83996641 TGGCTGTGTCTGATGACAG 60 NA Rattus norvegicus 81 Grp ENSRNOG00000016999 ENSRNOT00000022845 3 1 1 129 18 61563703 61569954 GGCTGTAGGACACTTAATGG 58 61570046 61570064 AAGCAAATTCCTTGCAGCT 59 NA Rattus norvegicus 81 Tmem147 ENSRNOG00000021006 ENSRNOT00000028514 1 1 1 80 1 89178397 89178506 CCAACATCAGTCTGGTCCA 59 89178335 89178353 GGAAGGTGTGGTACAGGTC 60 NA Rattus norvegicus 81 LOC361108 ENSRNOG00000009738 ENSRNOT00000012906 2 1 1 80 16 6440631 6444250 ATTGGGAAATCCACAACAGC 59 6444292 6444311 CGTCATCATCGTCATCATCG 59 NA Rattus norvegicus 81 Ift74 ENSRNOG00000008075 ENSRNOT00000011336 3 1 1 80 5 113676650 113676671 ATAATGGAGAAGCTGACTACAG 58 113676711 113680982 GTTTGTAAGCTGAGCATGTG 58 NA Rattus norvegicus 81 Olr594 ENSRNOG00000058143 ENSRNOT00000091187 2 1 1 60 3 75988654 75988673 GAAGTGACTGCTGCTATGAG 59 75988694 75988714 TTCTATGCCTACACAAGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn3 ENSRNOG00000014208 ENSRNOT00000019561 2 1 1 80 5 58104972 58106595 CTAGGAAGGTAGCTGATGGT 58 58104911 58104929 GAATCTTCACCCTCTCCCT 58 NA Rattus norvegicus 81 Galnt3 ENSRNOG00000005727 ENSRNOT00000007615 1 1 1 80 3 52177336 52177358 CTGAAGGCATGTGTCTATAAAGG 59 52176404 52177296 GAGAAGTTGGTCCTTCCGA 59 NA Rattus norvegicus 81 Bcl2l12 ENSRNOG00000020486 ENSRNOT00000027777 3 1 1 170 1 100992203 100992221 CAAATGATGCAACACAGCG 59 100991485 100992069 CATGGAGGTACCTGGATCG 59 NA InUTR Rattus norvegicus 81 Ahsa1 ENSRNOG00000048981 ENSRNOT00000075425 3 1 1 80 6 111299847 111299866 CAGGAGTGCAGTACAAAGGA 60 111299907 111300292 TCACACTAATCTCCACTTCGT 59 NA Rattus norvegicus 81 Lrrc4c ENSRNOG00000029798 ENSRNOT00000044595 3 1 1 93 3 86792843 86817259 CCCTAATGGAGAACAAGACTG 58 86817313 86817332 ATCTGCTGTGGATGTAAGGT 59 NA InUTR Rattus norvegicus 81 Smu1 ENSRNOG00000007671 ENSRNOT00000010464 3 1 1 80 5 57048868 57050290 CGGAAAGATCAAGGTTTGGA 58 57048807 57048828 CAGGTGACACCTTTACTATGTG 59 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738,ENSRNOT00000091681 2 3 3 80 2 196642704 196645445 AACGTGAAGAACTCTAGCCA 59 196645486 196645506 ATTAGTTGTCGGACCTAGCTG 60 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000087940 2 1 2 95 15 70349978 70373801 TGACAGATGATATGCTGGAC 57 70349902 70349920 CAGACACAGTCTTCAGCTG 58 NA Rattus norvegicus 81 Asic2 ENSRNOG00000058308 ENSRNOT00000086961 2 1 1 80 10 68263261 68324707 AGCAGAGGCTCACATATCTG 59 68263200 68263221 TGTAAACAGGAAAGAAGTCGAG 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000077663 1 1 4 60 2 182034564 182034583 AGATTGTTTGCTCTTTGCTG 57 182034523 182034543 CCATACTCAGTAACCTCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmpo ENSRNOG00000008797 ENSRNOT00000012715 1 1 1 80 7 31853165 31853185 GATGGTGCAGTAATTTCAGAG 57 31852736 31853123 CCTATTGGCCACTAAGGAG 57 NA Rattus norvegicus 81 Kctd2 ENSRNOG00000023764 ENSRNOT00000067838 3 1 1 80 10 103975075 103977161 GTTGGCAGAAGAAGGTGTG 59 103977203 103977223 CGTATCCTTTCCTTAACCAGC 59 NA Rattus norvegicus 81 Jkamp ENSRNOG00000004751 ENSRNOT00000006321 2 1 1 80 6 94843178 94843197 GATGCTTTACAACCCAAGTC 57 94843240 94846463 ACGATGGTGTATAGTGGGT 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 1 4 4 80 2 92576355 92577316 CCATGAGGGCATTATAGATTCAC 59 92577354 92577374 TGTGGTGGATTAAGAGATGGT 59 NA Rattus norvegicus 81 Cdk17 ENSRNOG00000004148 ENSRNOT00000005762 3 1 1 80 7 34058370 34058388 TGGAGAAGCTGCAGATCAG 60 34058428 34062085 CAATTTCTGATAAGGAGGCTCTG 59 NA Rattus norvegicus 81 Slmo1 ENSRNOG00000017954 ENSRNOT00000024144 1 1 1 80 18 63211682 63213422 TGTGTTCCACCAATATCACG 58 63213465 63213483 CAGGGTTCTCTGGATGAGG 59 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 3 2 2 80 13 102842703 102842723 TTGATTACTTAGTTGCCCACG 59 102836769 102842664 ACTGTACAGCAGATACAATCTG 58 NA Rattus norvegicus 81 Cotl1 ENSRNOG00000016257 ENSRNOT00000021954 3 1 1 80 19 52499245 52499263 CACGAAGATCGACAAGGAG 58 52499084 52499201 AAAGTCACCCAGATGACCG 60 NA DesignRelaxed Rattus norvegicus 81 Cyp24a1 ENSRNOG00000013062 ENSRNOT00000046011 3 1 1 80 3 168101051 168101071 AAGTGTGCCATTTACAACTCG 60 168100303 168101011 GTTAACACTGTTCCTTTGGGT 59 NA Rattus norvegicus 81 AABR07064998.1 ENSRNOG00000038308 ENSRNOT00000058328 1 1 1 91 6 103807493 103807511 GTGTCGGAGGAAGAAATGG 58 103807222 103807439 CTATCCTCCTTCTGTTCCCT 58 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 1 2 2 80 12 25500931 25500949 TGCATCCTATTTGGAGCCC 60 25500992 25502891 GTTACATACGGTTCACCTGC 59 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 2 3 4 80 X 70459696 70460243 CTTCATCTCCAAGGTGATTCC 59 70459636 70459656 TCATTCACAGCTAGAACTTGG 58 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 1 2 2 80 6 1581574 1583197 GTTGTCCTGTCAGCTTTGG 59 1581512 1581532 AGGTGCTTTGTAAGAATGGAC 59 NA Rattus norvegicus 81 Mrps25 ENSRNOG00000010912 ENSRNOT00000014933 3 1 1 80 4 124048295 124048314 ATTCAAGGAGTCGGTGAAGG 60 124042675 124048252 AACACGAATTTCCTGGCAC 59 NA Rattus norvegicus 81 Pip5kl1 ENSRNOG00000048676 ENSRNOT00000074122 1 1 1 80 3 11594956 11595158 TTCACAAAGAGGGCTTCGA 59 11595202 11595220 CTTCAGTCAGGCCAATGGA 60 NA Rattus norvegicus 81 Fbll1 ENSRNOG00000015303 ENSRNOT00000020554 3 1 1 60 10 20621656 20621674 CCAAAGTGTTGTACCTGGG 58 20621614 20621632 ATGATGTCGGAGACGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr103 ENSRNOG00000045842 ENSRNOT00000048299 1 1 1 60 1 168575853 168575871 CTGCCCTGTTTAGTTTCCT 57 168575894 168575913 ATATGGACACTTGGAGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il24 ENSRNOG00000004470 ENSRNOT00000006106 1 1 1 80 13 47619785 47619805 CATGCTTCCCATTAGTGACAG 59 47618895 47619744 GCCACTTCTATGTCCAACTG 59 NA Rattus norvegicus 81 Scg2 ENSRNOG00000015055 ENSRNOT00000020219 2 1 1 80 9 85238715 85238857 CCTACTTGAGAAGGAATTTGCAG 60 85238657 85238676 CCAACCCATTTGGTTTCTCC 60 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400,ENSRNOT00000086368 1 2 2 80 15 19824849 19824869 CAAGATGTGAAGGAGAACGAG 59 19821958 19824809 GGCGTCATACTTTGGATTCAG 60 NA Rattus norvegicus 81 Ubac1 ENSRNOG00000017983 ENSRNOT00000024352 3 1 1 82 3 3463891 3463909 TCTCATTGAGGTGGCACAG 60 3463643 3463847 CATCCAACATAGCATTTGCCT 59 NA Rattus norvegicus 81 AC094212.1 ENSRNOG00000055222 ENSRNOT00000091773 1 1 1 200 8 26342525 26345544 AATTCAAGGAAGTTCTTCGTCG 59 26342346 26342365 TTTGTAGCAGTTCTGTGCAG 59 NA Rattus norvegicus 81 Skp2 ENSRNOG00000059059 ENSRNOT00000089178 2 1 1 80 2 58517051 58517069 GACTGAACCTTTGTGGGTG 59 58516178 58517007 GTTCATCCAGTCTGGAGCA 59 NA Rattus norvegicus 81 Pradc1 ENSRNOG00000050483 ENSRNOT00000073135 3 1 1 82 4 117231287 117231305 ATGTGGAGATGATCCAGGA 57 117231010 117231241 GATCATGTAGCCATCTCGG 58 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000084109,ENSRNOT00000081482,ENSRNOT00000091828,ENSRNOT00000045400 1 4 4 80 5 141170571 141170871 GAAGAAGAGAAAGTGGTAGAAGAG 59 141170514 141170532 CAGAGTAGACACCCAACCC 59 NA Rattus norvegicus 81 Hn1l ENSRNOG00000024661 ENSRNOT00000090587,ENSRNOT00000035513 2 2 2 80 10 14310671 14310691 AAGACCAGTGACATATTTGGG 58 14307364 14310629 CAAGACATGATCCTTGGGC 59 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344,ENSRNOT00000025354 1 2 2 80 18 56076571 56076765 TTCCGAAATCTGCCAAACC 59 56076807 56076827 GCATGTTATCCATGGACAGTG 60 NA Rattus norvegicus 81 Creld1 ENSRNOG00000009414 ENSRNOT00000013052 1 1 1 82 4 145448285 145448303 ACAGAGCAAGCTACCTGTG 60 145448349 145448513 CAGGCCTTTGCACAATCTC 60 NA Rattus norvegicus 81 Creld1 ENSRNOG00000009414 ENSRNOT00000013052 3 1 1 112 4 145448584 145448735 AAGTGCCTAGATGTGGATGAG 60 145448809 145448827 TCCTGTCTGAAGCCTTCAG 59 NA Rattus norvegicus 81 Zfp1 ENSRNOG00000019059 ENSRNOT00000025761 3 1 1 82 19 43882377 43884775 ACTTTCAGTGGAAGTGTGG 58 43884821 43884839 TTGTAAGTGATGGTGCCTG 58 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584,ENSRNOT00000000674 2 2 3 93 20 31268780 31268800 GATGTTCCAATTTACGCAGAC 58 31275565 31276864 GGTCCTTTGTAGCAATCTCC 58 NA Rattus norvegicus 81 Cyp2d4 ENSRNOG00000032261 ENSRNOT00000011880 2 1 1 81 7 123601771 123601789 CAAGAAGTCACTGGAGCAG 58 123601628 123601728 GAAAGGGAATCCACTATGGTC 58 NA Rattus norvegicus 81 Strc ENSRNOG00000014845 ENSRNOT00000020130 3 1 1 80 3 113327287 113328158 TCTCCAAGACCCTGTACCA 60 113327225 113327243 ATCTCTGCGATCTGTGTCG 60 NA Rattus norvegicus 81 Tbc1d20 ENSRNOG00000005766 ENSRNOT00000008713 1 1 1 80 3 147787328 147788323 CTTTGCAGCTGTGATCGTG 60 147788367 147788385 AACAGGTGGTGAACAGAGG 60 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076976,ENSRNOT00000084238 1 2 3 88 2 154585808 154585827 TGAACCTGACTGGGAATCTC 59 154585874 154588144 GGCCAAAGATATAGACAACTCTG 59 NA Rattus norvegicus 81 Cks1l ENSRNOG00000032516 ENSRNOT00000052379 3 1 1 60 5 110832008 110832026 GAGTCAGGGATGGGTTCAC 60 110831966 110831985 CCGGAACAGTAAGATGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr101 ENSRNOG00000027658 ENSRNOT00000033219 2 1 1 111 X 140301791 140303540 AGCAACAGATAGTGTGCAG 58 140301698 140301716 CTTGAGTACTGTTGGTGCA 58 NA InUTR Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 1 1 1 61 3 11088921 11101625 CATGTCTAGCTGGGAGCTC 60 11088878 11088896 CAGAGTCACTGATGGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Zranb1 ENSRNOG00000017294 ENSRNOT00000023257 3 1 1 80 1 204980055 204980073 CTACACTCTGGTCCACCTG 59 204980117 204984583 GCTTGTTGAGACACCTCTG 59 NA Rattus norvegicus 81 Clcn2 ENSRNOG00000001742 ENSRNOT00000050927,ENSRNOT00000002376 3 2 2 80 11 83893172 83896684 TTCTTTGCACAAGACCCAC 59 83896728 83896746 CCAATGAGTCTGCCAATGC 60 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625,ENSRNOT00000083573 3 2 2 81 16 2364355 2365877 CGTCTGTCCTTCAGATTTCAG 59 2364294 2364318 CAGTAGAGATGAGTATTAGCAACAC 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432,ENSRNOT00000085655 2 3 3 80 18 63036453 63039321 CAACTTTGTGCACAGATTCC 58 63040957 63040976 TGAATCACTCCGAATTCCAG 58 NA Rattus norvegicus 81 LOC100360137 ENSRNOG00000043400 ENSRNOT00000068441 1 1 1 80 4 79015539 79015559 GGAGGAACAGAAGAAACTCGA 60 79015329 79015502 GATTTCTTAATTCCACCTGTAGCC 60 NA Rattus norvegicus 81 Pdcd11 ENSRNOG00000020304 ENSRNOT00000027512 3 1 1 80 1 266896970 266896990 CATTTGAGTGACTCCTACTCC 58 266897029 266900439 TGTTGACAGGATATAACATCGG 58 NA Rattus norvegicus 81 Acsm4 ENSRNOG00000014726 ENSRNOT00000034610 2 1 1 80 1 189446172 189448300 CTTCCTAGATACGCTTACCTC 57 189448342 189448360 TCCTGTTGTACAAGCATCC 58 NA Rattus norvegicus 81 LOC100364634 ENSRNOG00000049529 ENSRNOT00000039088 1 1 1 60 1 66774831 66774854 GAGGTTGGGTTTCTTATTCTTAGG 59 66774794 66774815 GACCAGACACATTACATCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adap1 ENSRNOG00000054033 ENSRNOT00000089590 1 1 1 80 12 17433734 17439477 GACCCAAGTTGAGTTCATGAC 59 17439516 17439537 TAGTAGAAGGGTGGTACTTTGG 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699,ENSRNOT00000040559,ENSRNOT00000044778 1 3 3 80 1 3872043 3872061 TGTCATCACGCTGAATCTC 58 3871156 3872001 AATATAGTACCGCTTGGAGAC 57 NA Rattus norvegicus 81 Ktn1 ENSRNOG00000012255 ENSRNOT00000016449 1 1 1 80 15 24508181 24508201 TGAATGACCAGAATAAGGCGT 60 24508240 24514255 CCACATCTTTATTAGGCTGCTC 59 NA Rattus norvegicus 81 RGD1560303 ENSRNOG00000025799 ENSRNOT00000004344 3 1 1 60 1 14115836 14115855 GAAACCATGGCTACATACCT 57 14115795 14115815 CATAATTGCCACCATTCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr2a ENSRNOG00000010063 ENSRNOT00000013408 1 1 1 99 15 56669370 56731589 CATATCTGTAGGTATATCCATGCCA 60 56731646 56731664 AAAGTTGTCATCGGCAAGC 60 NA Rattus norvegicus 81 Aasdhppt ENSRNOG00000005795 ENSRNOT00000008062 1 1 1 81 8 1449359 1449378 CTATACAGTTCTTGCCGCAG 59 1444428 1449315 AATTGAACCACGACCTGGA 59 NA Rattus norvegicus 81 Mcm10 ENSRNOG00000017981 ENSRNOT00000024178 3 1 1 80 17 77239949 77240508 TTCTCCTGAAGATGAACTGG 57 77240550 77240569 TTCTGAAATTCCTCCGACTC 57 NA Rattus norvegicus 81 Ppp3cb ENSRNOG00000054782 ENSRNOT00000082236 2 1 1 81 15 4228233 4229061 GTCTTCTCTGTTCTCAGGGAG 60 4229104 4229122 CTCCACTAGGCAACATCCC 60 NA Rattus norvegicus 81 Pramel1 ENSRNOG00000027328 ENSRNOT00000038858 3 1 1 80 5 162162041 162162059 TGAAATGCCTCCAGATCCT 58 162162102 162162810 TCTTTAGCCACCAGAATAGC 57 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000085000 3 1 2 143 10 85629289 85631293 GTAAGAATCAGCCCTTCTGC 59 85631398 85631417 GGGTACCATCACAGTAAGGG 60 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029,ENSRNOT00000065649,ENSRNOT00000089897 1 3 3 80 4 38256122 38263249 AGATGCTTCAGATTCTGAAGG 58 38263288 38263309 GAATCACTACAGGAACCTTCTC 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000077566,ENSRNOT00000052054,ENSRNOT00000079735,ENSRNOT00000088239 3 4 7 91 9 43766442 43768283 TCCACAACTTCAGGTTGGG 60 43768336 43768356 GAAGAGCTATAACAATGGCGG 59 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000087346,ENSRNOT00000012340 1 2 2 80 10 86677012 86677031 ACAAGATCACCCGGAATCAG 60 86677074 86677836 CTAGAACCAGGTCCATGGC 60 NA Rattus norvegicus 81 Parm1 ENSRNOG00000002579 ENSRNOT00000003472 1 1 1 80 14 17973083 17982943 CTGAAGATCAGGCATTCCTC 58 17973022 17973042 GAGAGGGTTGTTGTAGTTTCC 59 NA Rattus norvegicus 81 Crtam ENSRNOG00000008153 ENSRNOT00000010792 2 1 1 81 8 45202668 45202686 GCTGAAGTGTTCCACAGAG 59 45171219 45202624 TGTTTCTTGCATCTCCAGAC 58 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 1 1 1 60 15 23603585 23603603 AGATGATGTACGCTGGGAG 59 23601471 23603562 AATACCTTAGTTAGCTCGGC 57 NA DesignNoJunction Rattus norvegicus 81 Csn1s2a ENSRNOG00000039331 ENSRNOT00000060273 3 1 1 80 14 21943336 21943355 TTCTTCATCTTCACCTGCCT 59 21941125 21941722 GGCAGATTCCTCACTGGAG 60 NA Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 2 2 2 81 9 80154621 80155296 CTACAAGAGAAAGCAGTGCA 58 80154559 80154579 CAGCTTCATCCCATACTTGTC 59 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 2 2 2 80 6 26572296 26572314 AGATGGGAAGGTACTGCTG 59 26572357 26573758 GCAGGTTTCATAGCATCTGG 59 NA Rattus norvegicus 81 AABR07007928.1 ENSRNOG00000047601 ENSRNOT00000072217 3 1 1 60 2 35392319 35392338 TGATCCTGCTCATCTCAGTC 59 35392358 35392379 CTGCTGAGGAAATAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glt8d2 ENSRNOG00000033579 ENSRNOT00000051181 2 1 1 80 7 27186272 27187278 TCGTACAAGGTGACATCCA 58 27187320 27187340 AATCACAGTCATCTGAGAAGG 58 NA Rattus norvegicus 81 Evx2 ENSRNOG00000001589 ENSRNOT00000002156 3 1 1 85 3 61580020 61580040 ACAGGGAGAACTATGTGTCTC 59 61578634 61579973 GAACCACACCTTGATGGTG 59 NA Rattus norvegicus 81 Hacd1 ENSRNOG00000043192 ENSRNOT00000063911 3 1 1 80 17 81187411 81187601 TTGCTTGAGGTAGTCCACTG 60 81187274 81187294 GATTCGTGAACTCACTTGGAC 59 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000007158 1 1 2 82 10 47131588 47131606 GAGAGTCTCCAAGATGGCC 60 47118013 47131542 CTGACAGGCTAACCCTCTC 59 NA InUTR Rattus norvegicus 81 Rab4b ENSRNOG00000001500 ENSRNOT00000002052 2 1 1 80 1 83984979 83984997 AAGAAGGACCTGGATCCTG 58 83983448 83984937 CAGGAACATCAGCTCATTCTC 59 NA Rattus norvegicus 81 Vps39 ENSRNOG00000008316 ENSRNOT00000011155,ENSRNOT00000085132 1 2 2 80 3 112095955 112095973 CACCATCAAGTCCAAGCAG 59 112095451 112095911 AGGGCCACATTTGTATGGA 59 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 3 1 2 63 3 55466596 55466614 CGTGGTCAGCTTGAATGTG 60 55466640 55466715 AAAGGTGAATGCAAACAGGA 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912836 ENSRNOG00000023469 ENSRNOT00000047532 2 1 1 80 2 102452254 102453028 CTTGAAAGTGTCCTGAGAGTC 58 102453068 102453088 GAAGTCGCTGTAAGAAAGTCC 59 NA Rattus norvegicus 81 Smpd3 ENSRNOG00000000257 ENSRNOT00000031977 3 1 1 90 19 38241069 38241087 ATCTGTTGAAGGGCAATGG 58 38240756 38241014 GAATTCTTCCACCTCAGCC 58 NA Rattus norvegicus 81 P2ry13 ENSRNOG00000029756 ENSRNOT00000051027 1 1 1 60 2 149431527 149431546 GGCATCAAGTAGTCAGTCAC 58 149431486 149431507 AGCATCAGAATAAACACAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 2 2 2 80 10 45905792 45908376 GAAACTCTGGTTGGTCAGC 59 45908419 45908438 AGAGAATGGTTGGAGCTCAG 60 NA Rattus norvegicus 81 Csgalnact1 ENSRNOG00000013024 ENSRNOT00000017822 3 1 1 80 16 23069721 23073071 CAGACTTCATCAACATAGGTGG 59 23073111 23073130 GATATTTCCGGTACAGGTGC 59 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 1 1 1 76 1 257080134 257081938 AAACTGGGTTCATAGGTCCC 59 257081977 257081995 AATCATGGCACTGGAACCA 60 NA DesignNoJunction Rattus norvegicus 81 Ppp2r5b ENSRNOG00000021025 ENSRNOT00000028542 2 1 1 80 1 221598531 221598730 TGGAATCAAACCATCGTGTC 59 221598470 221598489 AAGCTCATCAAACAGCTTCC 59 NA Rattus norvegicus 81 Sirt6 ENSRNOG00000006393 ENSRNOT00000008758 2 1 1 81 7 10937657 10937676 GTCGGTGAATTATGCAGCAG 60 10937718 10938615 CTCTGGTGGGTCGAATATCTC 60 NA Rattus norvegicus 81 Lactb ENSRNOG00000018081 ENSRNOT00000024452 3 1 1 80 8 72762050 72765533 CTGGTCAGAAGGTTTAGGC 58 72761988 72762007 ATGCTTGCAATTCTCATGAC 57 NA Rattus norvegicus 81 Manba ENSRNOG00000052247 ENSRNOT00000087371 1 1 1 80 2 240688542 240688561 CGATACAGTTGCAGAAATCC 57 240688602 240689347 ACGTCAAAGCTATATCTGGTG 58 NA Rattus norvegicus 81 Zmynd10 ENSRNOG00000021602 ENSRNOT00000039258 3 1 1 80 8 116305578 116305835 ACAGCTGCTTAAGCTTCAG 58 116305878 116305897 AGGAAACTCTTCAGATCAGC 57 NA Rattus norvegicus 81 LOC689991 ENSRNOG00000028362 ENSRNOT00000074427 3 1 1 82 9 73498060 73498078 CTTCCAGAACTCCATGGCT 59 73498121 73506084 TGAGATCGGATTCCTTTATCCT 59 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860,ENSRNOT00000008857,ENSRNOT00000085647 3 3 3 80 3 117496140 117497141 TCATCGTATTGAGCCTTCC 57 117497184 117497203 TGGTCAGGATTTCTAACCAC 57 NA Rattus norvegicus 81 Spink5 ENSRNOG00000013116 ENSRNOT00000078731 1 1 1 80 18 35182725 35182745 CATAACACAGCACAGGATGTC 59 35182786 35182904 GCACTCATCTTCACTGATCC 59 NA Rattus norvegicus 81 Spink5 ENSRNOG00000013116 ENSRNOT00000078731 2 1 1 80 18 35141731 35141752 AAGAAGCTCAAGTAAATGCCAC 60 35141790 35144530 CAAATTCCTTGCAAAGTTCCTC 59 NA Rattus norvegicus 81 Spink5 ENSRNOG00000013116 ENSRNOT00000078731 3 1 1 80 18 35182786 35182904 GGATCAGTGAAGATGAGTGC 59 35182945 35182965 ATGGATCATCCATTTCTGGAC 58 NA Rattus norvegicus 81 Pramel ENSRNOG00000047492 ENSRNOT00000052196 3 1 1 80 X 106003661 106003681 AACACCTTAAGGAACTCAGCT 59 106003720 106004649 AACCAGGTGGTAAGATTCTGAG 60 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196,ENSRNOT00000083812 1 2 2 80 3 148480474 148480496 GAAGACTATGAACTCAAGACCTG 59 148480536 148481077 TTCCTTTCCTGTGAGCCTG 60 NA Rattus norvegicus 81 C6 ENSRNOG00000024115 ENSRNOT00000033112 1 1 1 80 2 54466356 54466374 GACCACTACCCATGGACTC 59 54466416 54467969 TACGATTTGTCTCTGTCTGCT 59 NA Rattus norvegicus 81 Cyth1 ENSRNOG00000043381 ENSRNOT00000004196 2 1 1 80 10 107205759 107212049 GAATACACCACGGACAAAGAG 59 107205699 107205718 CTTCTTGGAGTCTTCCACCT 59 NA Rattus norvegicus 81 Ddias ENSRNOG00000022521 ENSRNOT00000031974 2 1 1 80 1 157679735 157679753 GAACTCAGAGCCTGTTGAC 58 157678519 157679692 CTCCAAAGTTCGTTACTCCA 58 NA Rattus norvegicus 81 Hsph1 ENSRNOG00000000902 ENSRNOT00000001201 2 1 1 80 12 6324934 6325616 TTTATATGTGAGCAGGAACACG 59 6324875 6324895 GTCCTCTCCTTCCTCATACAG 59 NA Rattus norvegicus 81 Hsph1 ENSRNOG00000000902 ENSRNOT00000001201 3 1 1 80 12 6324406 6324626 ACTTCAGAGGCAAGGATGAG 60 6324345 6324366 TCACCTCGTTAACAGACTTCTC 60 NA Rattus norvegicus 81 Tbl2 ENSRNOG00000046252 ENSRNOT00000075138 2 1 1 97 12 24574063 24574081 AAGATTTCCTTCAGCGGGA 59 24571593 24574003 ATGAATTTCCCTGCAGTCAG 58 NA Rattus norvegicus 81 Adamts3 ENSRNOG00000027463 ENSRNOT00000060465 3 1 1 80 14 19887979 19887999 GTATGTTGGTGACATCATGGA 58 19888038 19972346 CTCTTTATCATTCCAGCCAGAC 59 NA Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 1 2 2 80 7 76093044 76096821 CTCTATGACTACTACAAGGTTCCTC 60 76096859 76096877 TTCCTCGTCTTCTTGGCTG 60 NA Rattus norvegicus 81 Ppp1r37 ENSRNOG00000017692 ENSRNOT00000023867 3 1 1 80 1 80444139 80444550 GATGAAGATGGTGCCTCAG 58 80444077 80444098 CTTGTTGAAAGAGATGTTGAGG 58 NA Rattus norvegicus 81 Dpp8 ENSRNOG00000019105 ENSRNOT00000025873 1 1 1 80 8 70540739 70542361 CGAAAGAACTCCTAGTGGTG 58 70542401 70542422 ACATGAATAATCTCCACCTCAG 58 NA Rattus norvegicus 81 AABR07034730.3 ENSRNOG00000057165 ENSRNOT00000038646 3 1 1 80 11 85508364 85508506 ATCACTTAACAGGGTCATGTG 58 85508546 85508566 GTTTGACTGTGCTTCCTAGAG 59 NA Rattus norvegicus 81 Ska2 ENSRNOG00000025981 ENSRNOT00000036098 3 1 1 83 10 74414026 74421285 AACTGATGTTCCAGAAAGCTG 59 74421327 74421348 AGTGTGGGTGATTAATCTTGAC 59 NA Rattus norvegicus 81 E2f8 ENSRNOG00000022537 ENSRNOT00000035512 1 1 1 80 1 104192099 104192359 CAAGAGCAGCAAAGCTGAG 60 104192037 104192055 ATCTTGCAGATAGCAGCGA 59 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 3 2 2 80 19 55453585 55453605 AAGAGTTTCATTCCAAGCTCC 59 55449867 55453546 GAAGATTAGCCTTCAGAAAGGG 59 NA Rattus norvegicus 81 Exo5 ENSRNOG00000037432 ENSRNOT00000056644 3 1 1 100 5 139852794 139852812 AAGTACCTACGCATCTCCC 59 139851410 139852731 TTGAACAAGTAGGGACCTGG 59 NA InUTR Rattus norvegicus 81 LOC103692138 ENSRNOG00000057664 ENSRNOT00000088294 2 1 1 60 4 72333229 72333247 CCATCTTCTACTCAGCCAC 57 72333271 72333289 TTGAAGGCATGGATAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017658.2 ENSRNOG00000050394 ENSRNOT00000075194 1 1 1 68 15 29761071 29761089 TACTCCTAGGCCTTCACCT 59 29760883 29760901 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911595 ENSRNOG00000046581 ENSRNOT00000075061 2 1 1 96 5 67709287 67709305 CGAAATGATGGAGCTGGAC 59 67709365 67710823 CTGTGCTTTCTGACTCTCC 58 NA Rattus norvegicus 81 Bhlhe22 ENSRNOG00000021745 ENSRNOT00000033940 2 1 1 61 2 102686683 102686701 ACTACATCCTCATGCAGGC 60 102686726 102686744 GTTGAGGTAGGCGACTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 3 3 5 80 18 79424926 79426826 CTTCAAGAACATTGTGACACCT 59 79427268 79427287 CAGCTAAATCTGCTGAGGGA 60 NA Rattus norvegicus 81 Zfp362 ENSRNOG00000043364 ENSRNOT00000007761 1 1 1 99 5 146969345 146973909 GAAAGGACCCTCTAGGATGG 59 146969124 146969142 AATCAGGACCAGGTTGTCC 59 NA Rattus norvegicus 81 Cog4 ENSRNOG00000017745 ENSRNOT00000023927 3 1 1 80 19 43371389 43371408 GCTCTAACATCGACTGTCTC 58 43369683 43371349 TACATAGAACATCCCTGAAGTC 57 NA Rattus norvegicus 81 AABR07017639.1 ENSRNOG00000049830 ENSRNOT00000074782 3 1 1 105 15 29532819 29532955 CTCCTCATCCTCACAAGGG 59 29532732 29532750 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000004776,ENSRNOT00000020608 3 3 3 80 14 21073571 21075646 ACACAGTTACGATTGGACG 58 21073509 21073528 CATCTTCATAGCCAGTTCCA 57 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000079763,ENSRNOT00000005467 1 2 2 80 13 94852026 94852044 GTGGGAAAGAGCAGAAGAG 58 94847324 94851983 TGTTTGTTTCCTTTCAGCCT 58 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 1 2 2 80 3 60089324 60089342 CTCTATGGCGTCTTCCCTG 60 60088429 60089283 TGAGGTTATGATCTCCACTTCC 59 NA Rattus norvegicus 81 LOC681182 ENSRNOG00000047077 ENSRNOT00000068118 2 1 1 81 12 20883364 20885755 TACACATGATCTCAGTACGACC 60 20885797 20885815 CCTTATGTTCTCCAGGCCA 59 NA Rattus norvegicus 81 Sept12 ENSRNOG00000003137 ENSRNOT00000061208 2 1 1 81 10 10779146 10780821 AACAATGACAAGTGCTGGG 59 10780866 10780884 TGATGAGAAGCTCCTCCTG 59 NA Rattus norvegicus 81 Rltpr ENSRNOG00000024452 ENSRNOT00000041970 3 1 1 80 19 37664147 37664165 TGGACAGTTCCACAGAGAC 59 37664207 37664344 CAGGTCTACATGAGGGATCAG 60 NA Rattus norvegicus 81 Cmtm2a ENSRNOG00000025420 ENSRNOT00000061648 1 1 1 80 19 880541 883720 CCTATGACAGATCTATTGAACAGC 59 883759 883777 TCGTCTAGCCTTGAAAGCA 59 NA Rattus norvegicus 81 Olr125 ENSRNOG00000016027 ENSRNOT00000021436 1 1 1 60 1 168869075 168869095 TTTCCTTCACTGAATCCTCTG 58 168869035 168869054 CAGATAGCCACATAACGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir16 ENSRNOG00000035504 ENSRNOT00000053627 1 1 1 66 2 165606094 165606114 CACGTAAATATTGGCGTAGTG 58 165606142 165606160 TGTCACACTAAAGCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866,ENSRNOT00000064138 1 2 2 216 1 215135700 215136095 TCTGTTCCTGCTCTAGCTG 59 215143862 215143880 CAACCTGAAGAGCAACAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam135b ENSRNOG00000005159 ENSRNOT00000006966 1 1 1 80 7 112679247 112682698 CTGGTTAGTACTGGCTTGTG 58 112679186 112679204 AGCGTTATCCCTGAAGGTC 59 NA Rattus norvegicus 81 Fastkd2 ENSRNOG00000023923 ENSRNOT00000002872 2 1 1 80 9 70452537 70454483 CTGAGGACAATTCAGGAGC 58 70454526 70454545 CTCCATGGTCACTAAAGCAG 58 NA Rattus norvegicus 81 Zcwpw1 ENSRNOG00000050128 ENSRNOT00000065866 3 1 1 80 12 21447431 21447453 CTCTTACCAGTGCAGAATTTGAG 60 21446000 21447392 TACAGGAAGTCTCCAAGCAC 60 NA Rattus norvegicus 81 Mef2d ENSRNOG00000031778 ENSRNOT00000051394 3 1 1 89 2 187531020 187532622 ATCATTTGAACAATGCCCAG 57 187532674 187532692 GTAAACTTGGTGTTGCCAC 57 NA Rattus norvegicus 81 Map3k19 ENSRNOG00000003952 ENSRNOT00000005244 3 1 1 84 13 44527141 44529672 CTATGGCACAGTATATTGTGGG 59 44527078 44527096 CAGTTTGTCGGTCGAATCC 59 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 3 2 2 80 1 142963146 142965386 AGATCCAGGTCTTCCTGAG 58 142965430 142965448 AGGCAAAGACATCCTTCAC 58 NA Rattus norvegicus 81 Orm1 ENSRNOG00000007886 ENSRNOT00000010454 3 1 1 80 5 79181410 79181428 AATATTCCAGCAGGCTGTC 58 79181471 79182637 CTGCACTTATCCTTTGTCCA 58 NA Rattus norvegicus 81 Olr423 ENSRNOG00000031803 ENSRNOT00000044947 2 1 1 60 3 21115729 21115750 CGGAACCAAGATGTTAAAGGAG 59 21115768 21115789 AGTCTGAAGTATGGAGTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910829 ENSRNOG00000047507 ENSRNOT00000071447 3 1 1 60 4 117568075 117568096 TATGTGGCTAAATGTTTGCAGG 60 117568036 117568056 GTGCATTCAGGTAAGACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000040236,ENSRNOT00000071818 2 2 2 81 7 115034618 115035325 AGTGTCTGATGACACTGATGG 60 115034557 115034575 GAGACAATGCGGATGACCT 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000089339,ENSRNOT00000087088,ENSRNOT00000022292,ENSRNOT00000066004,ENSRNOT00000079954 1 6 7 80 2 186160559 186164820 TGTCCTGGATCATAGTGAGTG 59 186160499 186160521 CTTCTGGATCCAGAATACTTAGC 59 NA Rattus norvegicus 81 Ints12 ENSRNOG00000011844 ENSRNOT00000016066 3 1 1 80 2 238267557 238268596 AGAACTGAAGTTAAGCCGTC 58 238268636 238268657 TAGGCCACTAGTTACTGAAGAG 59 NA Rattus norvegicus 81 Edar ENSRNOG00000028598 ENSRNOT00000030348 2 1 1 80 20 28190788 28190806 GTTTCAGCTCACTCCTCCA 59 28189423 28190746 TTGACTTGAGAGCTCTTTGTG 59 NA Rattus norvegicus 81 LOC102549447 ENSRNOG00000029567 ENSRNOT00000041894 2 1 1 80 8 107254568 107254586 CACCTATCAGTGCAAGGTG 58 107251581 107254527 CTCCCAAGGATATTAGTGACAG 58 NA Rattus norvegicus 81 Grap ENSRNOG00000002599 ENSRNOT00000003515 3 1 1 81 10 47930708 47930726 GGCCCTCTACAACTTCCAG 60 47930767 47938080 GTCCATGTTTAGGATCTTAAGCG 60 NA Rattus norvegicus 81 Pde6d ENSRNOG00000018610 ENSRNOT00000025262 2 1 1 80 9 93565423 93565442 TCTTCAGCAGAGCAAATGGA 60 93564487 93565382 GAAGAACCACTCTTCTAGGCA 60 NA Rattus norvegicus 81 Tas2r140 ENSRNOG00000021329 ENSRNOT00000038581 1 1 1 60 4 167201530 167201551 TTCACATTCATACCCTTCACAG 59 167201491 167201509 ACAGGGAGAAGATGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgka ENSRNOG00000022943 ENSRNOT00000036373 1 1 1 80 7 3144223 3144460 CACCCTGTACAATCAAGATCAC 59 3144164 3144185 CAAAGAAATTGGAGGAACTGGG 60 NA Rattus norvegicus 81 Dgka ENSRNOG00000022943 ENSRNOT00000036373 3 1 1 80 7 3146007 3146025 CTTGGAGTTTGCCACATCG 60 3145084 3145963 TTCCCACATATCTCGACGG 59 NA Rattus norvegicus 81 Slc17a9 ENSRNOG00000010275 ENSRNOT00000013623 3 1 1 80 3 176240714 176240732 TCTTCTACTTCTCAGGCGG 59 176240775 176241444 GGACAAGGTCTTTCTCATCC 58 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000089985 2 1 4 128 9 81577355 81577699 ATGAACTACGGGCTGACAC 60 81576530 81576548 AAAGCTGTCACTTCCTGCT 60 NA InUTR Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 2 2 2 80 X 110846463 110862326 AAAGTAGGAAGCAGAGGCAG 60 110862369 110862387 CTCCTTGTTTCAAGGTGCG 60 NA Rattus norvegicus 81 Sigmar1 ENSRNOG00000014604 ENSRNOT00000019795 3 1 1 112 5 58122897 58123871 AGGTCTATTACCCAGGAGAG 57 58122804 58122822 GGTAGACGGAATAACACCC 57 NA Rattus norvegicus 81 Mettl11b ENSRNOG00000025415 ENSRNOT00000076404 1 1 1 85 13 81990754 81990772 TTACCACTGCTACAGCCTG 59 81989941 81990705 TCAGGTACCCTGATACCCA 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081673,ENSRNOT00000091461 2 2 3 80 20 3346187 3346207 CTGAAGATGCTTCATCCTCAC 59 3346245 3346361 TCTGGTATTCTTCTGAATCCAGG 60 NA Rattus norvegicus 81 Gba ENSRNOG00000049281 ENSRNOT00000074727 2 1 1 80 2 188520982 188521362 GTCACAGCATCATTACGAACC 60 188521404 188521422 GCCCTCCTTCAGGATTCAG 60 NA Rattus norvegicus 81 Cyp26a1 ENSRNOG00000016750 ENSRNOT00000022549 1 1 1 80 1 256385022 256385042 TCACTGATCACCTACCTAGGA 59 256385084 256385804 GCAAAGTAAGCCCTTGCTC 60 NA Rattus norvegicus 81 Dtx1 ENSRNOG00000050848 ENSRNOT00000074974 2 1 1 93 12 41413567 41413698 CCAATGGCAACAAGGATGG 60 41413754 41413773 AATTCCATCTTCCCAGGTGG 60 NA Rattus norvegicus 81 Ndufv3-ps1 ENSRNOG00000027593 ENSRNOT00000030926 2 1 1 60 13 51297380 51297399 CAGCATCATGAGTACAACGC 60 51297339 51297357 TGAACTTGGAGAGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setd5 ENSRNOG00000007472 ENSRNOT00000066723 2 1 1 80 4 145061735 145061754 CCAGAAGAGAATCATGACCC 58 145061796 145062428 ATTGTCAACTTCCTCATGCT 58 NA Rattus norvegicus 81 Cped1 ENSRNOG00000021840 ENSRNOT00000038566 3 1 1 80 4 49124558 49124576 GAAGCTGATGGGAAACCCT 60 49124618 49138268 TTCTGGTAACACATTCACCCT 59 NA Rattus norvegicus 81 Serpina1f ENSRNOG00000037762 ENSRNOT00000057322 1 1 1 81 6 127566067 127566902 GACGACAATCTAATCTAAGGATGG 59 127566009 127566029 ATCATTGACTCCACATCATGG 58 NA Rattus norvegicus 81 Nsun6 ENSRNOG00000018520 ENSRNOT00000025046 3 1 1 80 17 82058079 82058100 CAGAGTGAATACGCATTTAGGC 60 82053960 82058039 GATCCACCAAACTGCTTCTG 59 NA Rattus norvegicus 81 Col20a1 ENSRNOG00000010326 ENSRNOT00000040270 3 1 1 80 3 176515400 176515418 ACAGCTGGTTTCATCACAC 58 176515462 176515550 CATCTGGAGCTGGAATGTG 58 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705,ENSRNOT00000090572 3 2 2 80 15 108036706 108036725 AAACCAGCTATTCCGAGTCC 60 108034984 108036665 ACCACATGAATAATGACCCGA 60 NA Rattus norvegicus 81 Shc4 ENSRNOG00000037134 ENSRNOT00000011084 1 1 1 84 3 117944024 117944043 TGAACCTTGACAACCAACAG 59 117930078 117934059 TCTGTGGTATCAGGATCCC 58 NA Rattus norvegicus 81 Pex3 ENSRNOG00000015660 ENSRNOT00000021524 1 1 1 80 1 7698532 7698551 GCTTCTAGACAATATGGCGG 59 7688846 7698491 CTGGACAGACTGTTTATGGAG 58 NA Rattus norvegicus 81 Tgoln2 ENSRNOG00000014617 ENSRNOT00000019713 1 1 1 60 4 100480818 100480837 AAAGATCCAAAGTCACTCGG 58 100479045 100480797 AGCTTTAGGTTCAAACGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076186 1 1 3 60 13 82557540 82557561 GCTAAATGAGATGTTCTTTGGG 58 82559161 82559181 GTAAGAGTATGTCCACACTGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060250 3 1 10 80 15 32832041 32832061 GATAGAGGTTCAGCTCTAGGG 59 32832102 32852792 CTCTGGGTCTGTGACATCAG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848,ENSRNOT00000049681 2 2 2 80 1 140799925 140800993 TCTGCTACACAGGTGAAGAC 60 140801036 140801054 TCTGGATGGTGATGTCCTC 59 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 2 3 3 80 6 127611483 127612376 CAAACAAGGTCAGCCATTCTC 60 127611423 127611441 CAGTGAGCTCAGGAGTGTC 60 NA Rattus norvegicus 81 Rbm17 ENSRNOG00000018767 ENSRNOT00000025550 1 1 1 80 17 70596091 70597859 AGAGAAAGACAAAGAGTTACCC 58 70597899 70597918 ATAGCAGCTTTGGAAGACTG 58 NA Rattus norvegicus 81 Smim23 ENSRNOG00000027196 ENSRNOT00000031337 1 1 1 80 10 17718173 17718368 ACAGGGATATCAGGAAGCA 58 17718111 17718129 CTGGGATGTTACAGTCGTC 58 NA Rattus norvegicus 81 Olr519 ENSRNOG00000009852 ENSRNOT00000013060 3 1 1 60 3 74342355 74342377 CTCTTTGTTAGTTTAGGGACCAC 59 74342317 74342336 ATCTGTCATATGCCATTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srrd ENSRNOG00000000662 ENSRNOT00000000826 1 1 1 80 12 50319374 50320395 AGAATGAGGAAGGCAAGCA 59 50320437 50320457 TGTTGTATAGAGCTGTCCCAC 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692,ENSRNOT00000082289,ENSRNOT00000086856 2 3 4 80 1 102826909 102826927 CTTCAACATTCCACTGCCA 58 102825105 102826867 ACAAAGCTAGAAACACTGTCC 59 NA Rattus norvegicus 81 Higd2al1 ENSRNOG00000001071 ENSRNOT00000001416 2 1 1 60 12 4546469 4546488 CTATGGCCTTTACTGCTTCC 59 4546511 4546529 GGTGCGCATCATTAGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 2 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152497 104154706 GTTCTTCTGATCATAAGCCGA 58 NA Rattus norvegicus 81 Otub1 ENSRNOG00000021175 ENSRNOT00000028752 2 1 1 80 1 222453556 222457752 AGAAGATCAAGGACCTCCAC 59 222453495 222453513 CAAACGCTCGATAGAAGCA 58 NA Rattus norvegicus 81 Cdnf ENSRNOG00000026493 ENSRNOT00000036299 1 1 1 80 17 78726264 78726285 TGTGGATACCATAGAGGAAGAG 59 78724646 78726224 CCTAGATAATAGCACAGGCG 58 NA Rattus norvegicus 81 Zfp420 ENSRNOG00000037556 ENSRNOT00000032973 1 1 1 60 1 88542779 88542797 TTCTCCACAGACGAATCCA 58 88542819 88542839 GCTTTCCCACACTCTTTACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 1 2 2 80 7 142759256 142759274 TCCAGGGAAGCAAAGTCTG 60 142759318 142759341 CCTCGTGGTTCACTTTCCT 60 NA Rattus norvegicus 81 Ubxn2a ENSRNOG00000004950 ENSRNOT00000006668 2 1 1 80 6 28978533 28980225 ACTAGGAAGTGCTACACCA 58 28978471 28978489 GAAACAGCAGACAAAGTGC 58 NA Rattus norvegicus 81 Nr3c1 ENSRNOG00000048800 ENSRNOT00000019409 1 1 1 60 18 32670052 32670072 AGGCAGTGTGAAATTGTATCC 59 32670012 32670031 CTCCAAATCCTTCAAGAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll11 ENSRNOG00000019339 ENSRNOT00000032204 3 1 1 80 3 15119329 15131244 GGACCTTCATAAGGAACTGC 58 15119268 15119287 TGGTGATGTCGATGTAGAGG 59 NA Rattus norvegicus 81 Zic2 ENSRNOG00000054879 ENSRNOT00000089455 3 1 1 82 15 108911526 108911545 AGATAAGCCCTATCTCTGCA 58 108911590 108911775 ACTCATGGACCTTCATGTG 57 NA Rattus norvegicus 81 Gnptab ENSRNOG00000005228 ENSRNOT00000006946 1 1 1 80 7 28956628 28956646 GGTATGGGCTCTACGTCTG 59 28956690 28978050 ATTCCAGAACCACCTCTCC 59 NA Rattus norvegicus 81 LOC100360432 ENSRNOG00000046176 ENSRNOT00000073201 2 1 1 61 3 152226200 152226220 TCCACATTTCCTATCTCTTGC 58 152226241 152226261 TCAAGGTGGTTGATGTAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910824 ENSRNOG00000047036 ENSRNOT00000073693 3 1 1 60 13 100214508 100214526 TCACGAAGTAGCTGTGGTC 60 100214550 100214568 TAACTCTGAGCTCCTTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362684 ENSRNOG00000030596 ENSRNOT00000040481 2 1 1 60 5 161889574 161889594 ATCGTTTCCAGATGAGAATCC 58 161889615 161889634 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mllt3 ENSRNOG00000011280 ENSRNOT00000015094 2 1 1 80 5 106109689 106111000 TGAATGTGACAAGGCTTACC 58 106109628 106109646 TGCAGAATGTGTCTTTCCC 58 NA Rattus norvegicus 81 Wwp2 ENSRNOG00000012937 ENSRNOT00000018837 1 1 1 80 19 39611938 39611957 GACAACCCATGAACTGAAGG 59 39611998 39612486 GTCAGCAGCATGATATACTCC 59 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932,ENSRNOT00000076578 2 2 2 81 13 82739431 82742021 CTTCAAACCTAAGCCTCCCA 60 82739369 82739387 GACAGGTAGGACGTTTGGA 59 NA Rattus norvegicus 81 Kctd5 ENSRNOG00000057186 ENSRNOT00000084991 1 1 1 80 10 13432867 13445879 GATTCGGACAAGGATGAAACG 60 13432807 13432826 TCTCAGGTAGTTCAGCACAG 59 NA Rattus norvegicus 81 Zfp74 ENSRNOG00000046937 ENSRNOT00000072689 2 1 1 80 1 87820696 87820942 CAACTTAATCACAGTTGGCCC 60 87820636 87820655 ACTACACATGGCTCTTCCTC 59 NA Rattus norvegicus 81 Mfap2 ENSRNOG00000008257 ENSRNOT00000010993 2 1 1 80 5 159537502 159537520 CCAATACGACCTGGATCCT 59 159537564 159537809 TCTGCGTTCTCTATCTGGT 58 NA Rattus norvegicus 81 Ttll12 ENSRNOG00000022623 ENSRNOT00000037710 1 1 1 80 7 124478988 124479117 CTTCAAGGACTACACGAAACTC 59 124478929 124478947 ACAGTCAGCAGGTTCTCAC 60 NA Rattus norvegicus 81 AABR07054979.1 ENSRNOG00000052044 ENSRNOT00000089867 2 1 1 83 3 176151967 176151988 CTGCCGAGCATATTGATGC 60 176152030 176152053 CTTGTTGTAATACCGGTCATATCC 60 NA Rattus norvegicus 81 Tp53tg5 ENSRNOG00000026215 ENSRNOT00000029206 3 1 1 81 3 160919826 160921341 TCTGCTAGGGACAATGATGTC 60 160919765 160919783 GTTTCTTCTCAAGGGCCCT 60 NA Rattus norvegicus 81 Tbx1 ENSRNOG00000001892 ENSRNOT00000002597 3 1 1 80 11 86558444 86558465 ATGAAGCAGATCGTATCTTTCG 59 86558503 86559072 GGAGTTAAGAATAATGTGGCCA 59 NA Rattus norvegicus 81 Aimp2 ENSRNOG00000001044 ENSRNOT00000001379 1 1 1 86 12 12744534 12746415 TGCTTGGAAAGGATTATGGG 58 12746464 12746482 TATGTAGCACAAGCAGGGA 58 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 3 1 1 154 6 26602160 26602441 ATAGACACTCCGATAACCTGG 59 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1308923 ENSRNOG00000036876 ENSRNOT00000055361 1 1 1 123 5 172649695 172649713 AAGTAAGAGTGAGCCGTGG 59 172649800 172649921 GTCAGGCAGAGATTCCTGG 60 NA Rattus norvegicus 81 Ror1 ENSRNOG00000029449 ENSRNOT00000045987 2 1 1 80 5 119128882 119129452 TTGTCAAGTTTGGACCTCC 58 119207395 119207413 GGTATGGCTGACAGAATCC 58 NA Rattus norvegicus 81 Vwde ENSRNOG00000024709 ENSRNOT00000029602 1 1 1 80 4 39678975 39678995 AGACAGGAGAGCACTATTCAG 59 39678139 39678937 GCAGAATATCCTATCTCCAAGTC 58 NA Rattus norvegicus 81 Col16a1 ENSRNOG00000031475 ENSRNOT00000067663 1 1 1 80 5 148263206 148264194 CGGTTTCATTTGACCTTCAG 57 148264237 148264255 GTAAGATCTCACAGCAGCC 58 NA Rattus norvegicus 81 Dntt ENSRNOG00000013615 ENSRNOT00000051058 2 1 1 80 1 260317453 260320817 TGACAAGACCAAGAGGGTG 59 260320859 260320879 GGTTCAATGTAGTCCAATCCC 59 NA Rattus norvegicus 81 Angptl3 ENSRNOG00000008638 ENSRNOT00000011486 1 1 1 80 5 117701189 117702228 GAACAAGATGATCTGCCTGC 59 117702268 117702289 TGGTCTAATAGTATACACGCCA 59 NA Rattus norvegicus 81 Angptl3 ENSRNOG00000008638 ENSRNOT00000011486 2 1 1 80 5 117701189 117702228 GAACAAGATGATCTGCCTGC 59 117702267 117702289 TGGTCTAATAGTATACACGCCAC 60 NA Rattus norvegicus 81 Angptl3 ENSRNOG00000008638 ENSRNOT00000011486 3 1 1 80 5 117701188 117702227 AGAACAAGATGATCTGCCTG 58 117702267 117702288 GGTCTAATAGTATACACGCCAC 58 NA Rattus norvegicus 81 Cdh1 ENSRNOG00000020151 ENSRNOT00000027346 1 1 1 80 19 38769450 38769468 TCAGTTCCGAGGTCTACAC 59 38769510 38817346 CTTCAAATTTCACTCTGCCCA 59 NA Rattus norvegicus 81 Amt ENSRNOG00000050214 ENSRNOT00000073559 1 1 1 80 8 117068871 117068891 ACAGTCATGTTGATTCACACC 59 117068930 117069382 ATATCTTGGTCTGTAGCATGTG 58 NA Rattus norvegicus 81 Pnp ENSRNOG00000009982 ENSRNOT00000013582 3 1 1 80 15 27882241 27882370 CCAACGATGAAAGGTTTGGAG 60 27882411 27882430 CATTGAAAGCCTTCTGCCTC 60 NA Rattus norvegicus 81 Colec12 ENSRNOG00000016366 ENSRNOT00000065494 1 1 1 80 18 1049938 1049956 GCAGTGGAATGACTTCCAG 59 1049997 1052031 AATATGGATGATGGTACTGCCT 59 NA Rattus norvegicus 81 Creb3l4 ENSRNOG00000023493 ENSRNOT00000032062 3 1 1 80 2 189601114 189601296 CTCATCTCCATCCAGATAGATCAG 60 189601057 189601075 TTCAGAGGGCAGATCACTG 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000089233 2 1 8 108 3 100771187 100815563 TTCATTGAGCCCAGTTCCA 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Sdc1 ENSRNOG00000059947 ENSRNOT00000086633 2 1 1 80 6 33905137 33905157 TCTGTCATCAAAGAGGTTGTG 58 33905198 33905676 GGTGAAGTCTTGTTCTCCAG 58 NA Rattus norvegicus 81 Tnfrsf11b ENSRNOG00000008336 ENSRNOT00000011344 2 1 1 80 7 93802168 93802187 TTCCAGCTACTTAAGCTGTG 58 93800431 93802125 ACAGAGGTCAATGTCTTGG 57 NA Rattus norvegicus 81 Dpep3 ENSRNOG00000019757 ENSRNOT00000026809 1 1 1 80 19 37951205 37951223 CAGATTGACCTCATCCGAC 58 37951055 37951162 AGTGCTATTCAGACCATCAG 57 NA Rattus norvegicus 81 Tead4 ENSRNOG00000005608 ENSRNOT00000050834 3 1 1 81 4 161544412 161546240 GAAAGTTGAGACAGAGTTTGC 58 161544351 161544369 CATGTACTCACAGAGTGGG 57 NA Rattus norvegicus 81 Olr833 ENSRNOG00000015652 ENSRNOT00000020958 1 1 1 60 5 59198060 59198078 CATTTCCCTCAACGCACTG 60 59198018 59198036 GAGAGGAGTCACTGTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr833 ENSRNOG00000015652 ENSRNOT00000020958 3 1 1 60 5 59198602 59198621 AGAGTATATCCTCCTGGGAC 57 59198561 59198581 GAGCACAAACAGAGCTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brat1 ENSRNOG00000001236 ENSRNOT00000064726 1 1 1 84 12 16021072 16022225 TGAAACTTCAGCATTGTCCC 59 16021007 16021025 GTAGCTTTCAGGATGCAGG 58 NA Rattus norvegicus 81 Olr153 ENSRNOG00000017214 ENSRNOT00000023124 1 1 1 60 1 169562645 169562664 ATACACTACCATCCTCACCC 58 169562687 169562705 CCTGCTGATAATCACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83g ENSRNOG00000027924 ENSRNOT00000027312 1 1 1 80 10 47978479 47979123 TTCCTACAGCTTCACATGGT 59 47979166 47979184 AACATCTCGACCACCTGAC 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000019876 3 1 4 86 7 117721921 117721939 GGAATGAATGGAGCACTGC 59 117721678 117721872 CTCGACTGGACTGTACAGAG 59 NA Rattus norvegicus 81 Twistnb ENSRNOG00000010750 ENSRNOT00000014373 2 1 1 80 6 52765105 52765125 TGATGTGTTTCGCTTAGACTC 59 52765166 52765734 TTATGCTGCAAACTTGTGGT 59 NA Rattus norvegicus 81 Sgpp2 ENSRNOG00000037695 ENSRNOT00000018882 2 1 1 81 9 84284948 84287713 CATGGACAGGTACCAGTACC 60 84287757 84287775 GAGTCTGCTGAGACTCACC 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000082342 2 1 12 60 20 3363788 3363812 CTTATTCTCCAATCGAATAGGTCAC 60 3363830 3363848 ATACCAGGCATCTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049405.1 ENSRNOG00000037974 ENSRNOT00000057772 2 1 1 81 5 120869827 120869846 AATATCTCATCGGCACACTC 58 120869888 120869909 GTTTGGAATGCCAGATATCAC 57 NA Rattus norvegicus 81 Camta1 ENSRNOG00000042627 ENSRNOT00000067481 1 1 1 80 5 168991238 168991258 GTTTCCCAAAGTGTATTCTGC 58 168985535 168991201 GTTCCCATGATCATCTTCTATAGG 59 NA Rattus norvegicus 81 AABR07051266.1 ENSRNOG00000050908 ENSRNOT00000072025 3 1 1 90 3 4404473 4404491 TCTCAGAAGCCAGGAATGG 59 4401747 4402250 AACATCTGTCCTAGTGGGTG 59 NA Rattus norvegicus 81 Abhd1 ENSRNOG00000025689 ENSRNOT00000010403 3 1 1 80 6 26788980 26788998 TGAAGCACATAAAGCACCG 59 26788800 26788939 AGTTAAGTACCAGTATCCCTCC 59 NA Rattus norvegicus 81 Rab8b ENSRNOG00000018009 ENSRNOT00000024286 2 1 1 82 8 72646785 72646806 ATGATCCTGGGTAACAAATGTG 59 72645243 72646747 CCATAGTCAATTGCTAACTTCTCC 60 NA Rattus norvegicus 81 Cdh11 ENSRNOG00000013481 ENSRNOT00000018535 1 1 1 80 19 2511612 2511630 CAGGGACAACCAAAGTGAC 59 2511674 2514995 ACATCTGGTACACGCTCTG 60 NA Rattus norvegicus 81 Asic5 ENSRNOG00000011842 ENSRNOT00000016039 1 1 1 80 2 180949363 180950267 CCAACTGAAGACCATCCAC 58 180950309 180950329 CTGTAGGTGGTAAAGTTCCTC 58 NA Rattus norvegicus 81 AABR07051426.1 ENSRNOG00000047642 ENSRNOT00000073625 3 1 1 80 3 10894102 10900620 AACAGAAGGTAATCCTGGGA 58 10894041 10894059 TATCCAGCTTCACAGGAGG 59 NA Rattus norvegicus 81 LOC100911795 ENSRNOG00000022462 ENSRNOT00000030579 1 1 1 80 15 57715829 57715850 GTTTCCCAGGATATTCTGTCTC 58 57715891 57717505 GTTTGGTAACCGACTTGCT 58 NA Rattus norvegicus 81 Ndufb11 ENSRNOG00000008329 ENSRNOT00000011183 2 1 1 80 X 1787695 1787713 CAAAGAGAACCGACCATGG 59 1787756 1789017 GTGAAAGTCTGGGTTCTTCG 59 NA Rattus norvegicus 81 Ublcp1 ENSRNOG00000004477 ENSRNOT00000006063 2 1 1 80 10 30106175 30106195 TCAGTACCTCAAGGAGATAGC 59 30104675 30106138 TTCTTAGATAGATACCGTTCCCAG 59 NA Rattus norvegicus 81 Tex261 ENSRNOG00000013712 ENSRNOT00000065847 3 1 1 81 4 115449471 115450234 GAATATTATCCTTTCTCTGAGGTCC 59 115449414 115449432 AGAGTGACACGAAGAAAGC 58 NA Rattus norvegicus 81 Arhgap8 ENSRNOG00000033570 ENSRNOT00000017420 2 1 1 80 7 125753357 125753378 GCATTGTATGTTGTACATCCCA 59 125747955 125753318 CCCAAACTTGTGACTGATGAG 59 NA Rattus norvegicus 81 Slc9a3r1 ENSRNOG00000003232 ENSRNOT00000004351 3 1 1 86 10 103729312 103729330 CTGGTAGAGCCAGCTTCAG 60 103729379 103729616 ATCTTGGGCATTTAGCTCCT 59 NA Rattus norvegicus 81 LOC102552337 ENSRNOG00000045614 ENSRNOT00000034566 1 1 1 80 5 121453432 121453454 CGATGTAGATACTTTCAAGGCTG 59 121453229 121453393 AGTTTACACCTCCTAGACCG 59 NA Rattus norvegicus 81 Kcns3 ENSRNOG00000004899 ENSRNOT00000006499 3 1 1 80 6 36792246 36819719 TCAGACTTGGTGAACTTCAC 58 36792185 36792204 TGGCTCAAAGAAGAGAAGGA 59 NA InUTR Rattus norvegicus 81 Nkapl ENSRNOG00000056708 ENSRNOT00000080417 1 1 1 60 17 45175532 45175550 GTACTCTTGCCTCATCGTC 58 45175572 45175592 GCATAGTTATGGTGGTAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gfy ENSRNOG00000047401 ENSRNOT00000073918 1 1 1 97 1 101174129 101174421 AAAGAGACCGGGATGACTC 59 101174050 101174068 AAGATGCCAATCAGCATCC 58 NA Rattus norvegicus 81 Eif3l ENSRNOG00000011020 ENSRNOT00000014817 1 1 1 86 7 120328691 120330515 CATTGATAAGGACATGATCCAC 57 120330562 120330580 TCAAACTTGTGGATCTGCC 58 NA Rattus norvegicus 81 Ncapd3 ENSRNOG00000008932 ENSRNOT00000012078 1 1 1 80 8 28119170 28121124 TCATCACTCTGGGTAAACTCTG 60 28121164 28121183 CTTCAAGTTCTCGCACAAGG 60 NA Rattus norvegicus 81 Cdk10 ENSRNOG00000016088 ENSRNOT00000021607,ENSRNOT00000066552 2 2 2 80 19 56026711 56027324 CTATGGCATTGTGTATCGAGC 59 56027366 56027384 TTCTCTTTGTCCATCCGCA 59 NA Rattus norvegicus 81 Klk7 ENSRNOG00000018664 ENSRNOT00000025299 3 1 1 84 1 99751847 99751869 GAAGGTGTATAAGGATCTTCTGG 58 99751913 99753719 TGAGTCACCATTGCATGTG 59 NA Rattus norvegicus 81 AABR07001923.1 ENSRNOG00000047884 ENSRNOT00000072607 1 1 1 60 1 62114194 62114214 TGGTCTAAATCAAGGAGTCCA 59 62114154 62114175 CTTATTAAGCACTGTACCACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a14 ENSRNOG00000005687 ENSRNOT00000007967 1 1 1 80 X 120631251 120633590 AGTATTGGGATAAAGTGACGC 58 120633632 120633650 GGCAAAGTGCTAAGTACCA 58 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950,ENSRNOT00000066336 1 2 2 80 18 71064927 71064946 GTGAGATGTCTGAGGAAGAG 57 71064987 71086645 CTTCAGAGTCAGAACTGTAGG 58 NA Rattus norvegicus 81 Actrt2 ENSRNOG00000012586 ENSRNOT00000016781 1 1 1 60 5 172078166 172078184 GAGAATCGTGAGAAGACGG 58 172078124 172078142 GGTAGAAGGCAGGAACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr35 ENSRNOG00000028783 ENSRNOT00000051970 1 1 1 80 6 34098819 34098842 GAACAGTATCAGAAGTTGACTACC 59 34098876 34101011 CTCGTACCAAGAACCTTTATACAG 59 NA Rattus norvegicus 81 Hoxd12 ENSRNOG00000001587 ENSRNOT00000068636 3 1 1 115 3 61597961 61597979 AACTTGAACATGGCAGTGC 59 61598215 61598234 TATGGTTTCCTCTTCTTGCG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1565297 ENSRNOG00000001884 ENSRNOT00000002579 1 1 1 80 11 86894031 86894050 TAAGGAGAAAGGGACCATCC 59 86894090 86896944 ATTGGTGTGATATAGTGGTTGG 58 NA Rattus norvegicus 81 Cyb5r3 ENSRNOG00000009592 ENSRNOT00000064700 3 1 1 80 7 124031763 124031781 TGGTCATTCGTCCCTACAC 59 124030775 124031721 CCTTGAAGTAAACCTTGACCA 58 NA Rattus norvegicus 81 AABR07072562.1 ENSRNOG00000050653 ENSRNOT00000073029 1 1 1 60 17 69617332 69617352 GGAACCTAAACAACAGACACC 59 69617373 69617392 TTGGTAGAAGAACTGGGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Racgap1 ENSRNOG00000049033 ENSRNOT00000071885 1 1 1 80 7 141292874 141292893 AACGATTGATGAATCTGGCT 58 141291010 141292832 AAAGAAGAATCCCAGTCCAG 57 NA Rattus norvegicus 81 LOC100361067 ENSRNOG00000022652 ENSRNOT00000011446 3 1 1 60 10 65835873 65835893 AATATGCTATGAAGGCTGTGG 58 65835833 65835852 CCGTCTTTACATCTGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrde2 ENSRNOG00000004004 ENSRNOT00000005369 1 1 1 80 6 124157834 124157855 CTTCAGGACAGATAAGAAACCA 58 124156051 124157796 CTCTTGTACCTTGCTATATCCC 58 NA Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000022499 2 1 2 81 1 107295025 107295043 AATTTCCTCTCCTGGTGCC 60 107295088 107305647 GCTGCTTATGCAGAACCAG 59 NA Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000082582 2 1 2 175 1 107345218 107362386 AGATAAGAGAATGATGCTGCAC 59 107362522 107362540 GGTTCATGTCCTTCAGGGT 59 NA InUTR Rattus norvegicus 81 Tmem234 ENSRNOG00000049326 ENSRNOT00000074235 1 1 1 80 5 147805597 147810948 TGGCATCAACAGATCTGAC 58 147810992 147811010 GGACCTTCCCAACAATCAG 58 NA Rattus norvegicus 81 Sestd1 ENSRNOG00000012603 ENSRNOT00000016837 3 1 1 80 3 64076836 64076856 GTTGACAGAAGACTTTGGTGG 60 64075413 64076797 GTAAACTTCTCAAAGACCAGCC 60 NA Rattus norvegicus 81 Olr1436 ENSRNOG00000046642 ENSRNOT00000075204 3 1 1 60 10 44877354 44877374 TTCCTGTCAGACACTAAGACC 59 44877314 44877335 GAAACACAAATGCTTGGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adar ENSRNOG00000020744 ENSRNOT00000028181 3 1 1 80 2 189078769 189078787 TCTCAGCCTGAAAGGAGAG 58 189078828 189079366 CTGTAGAGAAACCTGATGAAGC 59 NA Rattus norvegicus 81 Gng5 ENSRNOG00000015936 ENSRNOT00000021358 2 1 1 82 2 252363675 252363696 GTGTCTTCAAGTACAAATCCCT 58 252363737 252367341 AGTAGTTTGAGAAACCTCGAG 58 NA InUTR Rattus norvegicus 81 RGD1560771 ENSRNOG00000042103 ENSRNOT00000066351 1 1 1 60 15 32412330 32412350 ACAGCTTGAAGGAAATGAGAG 58 32412290 32412309 ATGGCAGAAAGTACAGAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6334 ENSRNOG00000049688 ENSRNOT00000071266 3 1 1 63 3 150911633 150911652 AGCCTAAGCACTGTAATCAC 58 150911589 150911607 TTCCCATCAGATCCCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erf ENSRNOG00000020426 ENSRNOT00000027684 1 1 1 96 1 82116267 82116285 CAAGGACCCTGATGAGGTG 60 82115842 82116207 ATAGTAATAGCGCAGGGCC 59 NA Rattus norvegicus 81 Trem1 ENSRNOG00000022859 ENSRNOT00000049193 3 1 1 80 9 14734323 14734341 CCACTGCTGTTGTTTCCTC 59 14728260 14734281 CATTGTATGTGGAGACACTCG 59 NA Rattus norvegicus 81 Plxna2 ENSRNOG00000007324 ENSRNOT00000009900 2 1 1 80 13 113403046 113466664 GCAAGCTAAAGAAGATTCGAG 58 113466705 113466724 TCCCATCTTTGAACACAGAG 58 NA Rattus norvegicus 81 LOC100912070 ENSRNOG00000048407 ENSRNOT00000073438 1 1 1 95 1 91153936 91153954 TCATCTCTGCAGAAGAGGG 59 91154118 91154410 GTAGTAGTTCTTGGCTGACTC 58 NA Rattus norvegicus 81 T ENSRNOG00000012229 ENSRNOT00000016471 3 1 1 89 1 52890700 52890718 AGAGGTACCCGACTCTGAG 60 52889593 52890648 AATTGTCGGCATAGGTTGGA 60 NA Rattus norvegicus 81 Olr837 ENSRNOG00000033505 ENSRNOT00000041134 1 1 1 60 5 59278662 59278682 CACTTTACCTGTGAGATCCTG 58 59278622 59278642 TATTGATGGAGATGTCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr837 ENSRNOG00000033505 ENSRNOT00000041134 2 1 1 60 5 59278723 59278741 CTCTGGTTCAAACATCCCT 57 59278681 59278699 TGATTGATGACGTTGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 2 2 2 84 2 208556342 208556360 CTCCTCATCAAGAGCTGCA 60 208555763 208556046 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Ptges2 ENSRNOG00000014050 ENSRNOT00000019184 1 1 1 80 3 11429207 11429225 CAAGTACTGGCTCATGCTG 59 11429269 11429606 CACTTCATCTCCTCCGTCC 60 NA Rattus norvegicus 81 Olr678 ENSRNOG00000056750 ENSRNOT00000080803 3 1 1 60 3 77893533 77893555 GATCTACCTTGCAACTATTGGTG 60 77893495 77893513 AGGGCTGTAGATGATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr1 ENSRNOG00000008223 ENSRNOT00000010850 1 1 1 114 5 49311091 49311109 ATTTCAAGCAAGGAGCACC 59 49327749 49327767 AAGGCCATCTAGGATCGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1559493 ENSRNOG00000030914 ENSRNOT00000052130 1 1 1 80 5 126220534 126220554 CCAACCAGAAGAAATTCAGCA 59 126220107 126220492 CAGGTCCTATGTGGGACAG 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867,ENSRNOT00000058479,ENSRNOT00000080949,ENSRNOT00000078131,ENSRNOT00000080562 2 5 5 80 11 81435004 81440266 AATATTACTCCAGGTAAGGGTCC 59 81434946 81434964 GCTATCCATCGGTATGGGT 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867,ENSRNOT00000058479,ENSRNOT00000080949,ENSRNOT00000078131,ENSRNOT00000080562 3 5 5 80 11 81435007 81440268 GCAATATTACTCCAGGTAAGGG 58 81434948 81434967 TATCCATCGGTATGGGTTGG 59 NA Rattus norvegicus 81 RGD1311164 ENSRNOG00000055036 ENSRNOT00000089513 3 1 1 80 4 159493937 159493958 AAGCAAGAATATCAGGAATGGG 59 159493998 159498449 AATTTCTTCACTGAGGGAGC 58 NA Rattus norvegicus 81 LOC100365061 ENSRNOG00000048578 ENSRNOT00000060322 3 1 1 79 15 32386839 32386857 GTTCCTGTTCTTCTGGCTG 59 32387059 32387077 GGACACTCAGGTGAGATGG 60 NA DesignNoJunction Rattus norvegicus 81 Avl9 ENSRNOG00000013314 ENSRNOT00000018425 2 1 1 80 4 87039037 87039058 CCTCATTAGAAGGATCACAGGT 59 87040124 87041027 GGATCAAGACCTTGTGTCGA 60 NA Rattus norvegicus 81 Thbd ENSRNOG00000004687 ENSRNOT00000006200 2 1 1 60 3 142751147 142751166 CTCAGCTCTGTTCTAACACC 58 142751106 142751126 AACTCATAGCCATCATAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdh2 ENSRNOG00000001440 ENSRNOT00000001958 1 1 1 80 12 23948699 23954249 CTTCAGCCCAGAACAATGC 60 23948637 23948656 TCTTCAGGAGGAGTGAAAGG 59 NA Rattus norvegicus 81 Anks4b ENSRNOG00000046181 ENSRNOT00000075035 1 1 1 60 1 189940301 189940322 CTAGTGGAGACCCTGATAAGTG 60 189940343 189940361 GAGGCTGCGTAATGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hhat ENSRNOG00000003925 ENSRNOT00000072729 3 1 1 82 13 111435291 111436314 GAGGAAGTTAAGAGAAGGTGGT 60 111435230 111435248 TAGTACAGGCAGCGAACTG 60 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102,ENSRNOT00000083941 2 2 2 118 15 33722558 33722812 CTTTCAATTCAGGCCCTGC 60 33722458 33722477 CACAGGTCTCTGAGGTAAGG 59 NA Rattus norvegicus 81 LOC100911840 ENSRNOG00000019293 ENSRNOT00000026113 1 1 1 97 1 214018118 214024115 CTTTGTTTCCAGAGACACCTG 59 214018041 214018059 AAGCAGAGGTTCCGTAGAG 59 NA InUTR Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 3 2 2 81 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044950 78044969 GCTCGATGAAGAAGTTGTCC 59 NA Rattus norvegicus 81 Olr1232 ENSRNOG00000060071 ENSRNOT00000088564 1 1 1 60 4 1436497 1436520 CTGATGAACTTCGTACTAAAGGAG 59 1436538 1436557 AGAACTGAGTCATGCATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563812 ENSRNOG00000031864 ENSRNOT00000042547 2 1 1 60 13 96196199 96196219 AAACACCTTCACCATTACAGG 59 96196241 96196259 GCTGGGAAGCATTTCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmt2 ENSRNOG00000026248 ENSRNOT00000030228 2 1 1 80 17 78933635 78933738 AATGCTGAAGTGCTCAAGG 59 78933573 78933593 GTCAAAGCGGAACATATTGTC 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970,ENSRNOT00000085403 1 2 2 80 8 79673679 79673700 TCCAGAATATTCCTCACCAGAC 59 79673740 79674090 ATGTTTGCACTGCTTTCTCC 60 NA Rattus norvegicus 81 Fut7 ENSRNOG00000014156 ENSRNOT00000081798,ENSRNOT00000037169 2 2 2 82 3 2644815 2644935 ATTGTATTGGGTGCAACCC 58 2644980 2644999 GAGCCAGATTACCATGAGTG 58 NA Rattus norvegicus 81 Ms4a13-ps1 ENSRNOG00000033714 ENSRNOT00000054806 3 1 1 87 1 227371459 227380195 ATTATGGACAAGCAAAGCTGG 59 227371392 227371410 GAATATGTGAGGGCGACCA 60 NA Rattus norvegicus 81 Cux1 ENSRNOG00000001424 ENSRNOT00000059486 2 1 1 80 12 23412368 23429869 GTGAGTTCAGAAAGCACTCC 59 23429912 23429930 CACAGATTCGCTGGAACTC 59 NA Rattus norvegicus 81 Net1 ENSRNOG00000017765 ENSRNOT00000023945 1 1 1 80 17 70016185 70016204 TGTCCATCATGTCAGAAGAG 57 70016244 70016393 CTAACAGATCTTCGTGTAGAGG 58 NA Rattus norvegicus 81 Mvp ENSRNOG00000020182 ENSRNOT00000027360 1 1 1 80 1 198436598 198436618 CTGGACCAGAACAGTAATGTG 59 198436395 198436558 AAACAGTACCCTCTCATTGTC 58 NA Rattus norvegicus 81 Csf3r ENSRNOG00000008759 ENSRNOT00000011694 3 1 1 80 5 144048832 144048850 TTCCTGGGCATACTTTGCT 59 144048893 144049073 AGTCTTTCTGCTTTGCTTGC 60 NA Rattus norvegicus 81 Ccdc71 ENSRNOG00000048718 ENSRNOT00000074493 2 1 1 60 8 117248905 117248923 GAGATGATGGCTTCCAACC 58 117248941 117248965 CATGAACTATAACCATAGACATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hfe2 ENSRNOG00000021200 ENSRNOT00000028781 2 1 1 80 2 198657483 198657501 ACGACTTCCTCTTTGTCCA 59 198657543 198658075 TGATAGTGATCTTCCGGATGG 59 NA Rattus norvegicus 81 Rasl11b ENSRNOG00000002097 ENSRNOT00000002869 2 1 1 123 14 36552532 36553687 GAAATGCAGGTAACCTCTACAC 59 36551698 36551716 TTCAACTGCTCATTGCAGC 60 NA Rattus norvegicus 81 Fhdc1 ENSRNOG00000024594 ENSRNOT00000066477 1 1 1 80 2 183453074 183455353 AAGGCAGTTAAGGACAACCA 60 183453013 183453031 CCTCTTCTGTTCCAGCTCC 60 NA Rattus norvegicus 81 Fezf1 ENSRNOG00000007608 ENSRNOT00000010019 1 1 1 125 4 50311618 50311636 TACATGAAAGAAAGCGCCC 59 50311264 50311531 ATTAAAGACCTTTCCGCAGAC 59 NA Rattus norvegicus 81 Rn60_X_0695.1 ENSRNOG00000038099 ENSRNOT00000057979 1 1 1 60 X 68581241 68581261 CAGCTTCCTTGTATCTACACC 58 68581283 68581301 TAGATGGTAGCACCCACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usmg5 ENSRNOG00000020296 ENSRNOT00000027496 1 1 1 81 1 266862810 266862828 AAGTGATGGCCAATTCCAG 58 266862660 266862768 CAGGACACAATTCATTCTACCT 58 NA Rattus norvegicus 81 Samd7 ENSRNOG00000027995 ENSRNOT00000033449 3 1 1 80 2 116247202 116247220 ACAGAACAGCATCTTCGAG 58 116243553 116247159 CACATGCTGAGATACCTGAG 58 NA Rattus norvegicus 81 Tgm2 ENSRNOG00000012956 ENSRNOT00000018328 1 1 1 80 3 154607405 154608489 GAAGAGCGAAGGAACATACTG 59 154607345 154607364 GCATCATACTTGGTGCTCAG 59 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012,ENSRNOT00000008003 2 2 2 80 4 161692362 161692382 TACTTGACATTGGACCAAGTG 58 161693342 161693891 TTTCTGCTGTGATTCCAAGTG 59 NA Rattus norvegicus 81 Mkrn3 ENSRNOG00000010172 ENSRNOT00000013551 1 1 1 101 1 123064617 123064635 AGTCTACAGCTCCCATGGA 60 123064341 123064359 AAGCCTCAAACTGAGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem165 ENSRNOG00000002199 ENSRNOT00000003010 1 1 1 80 14 34507745 34507765 TTAACATTCTTGGCGGAATGG 59 34504501 34507704 CACACCATAGGGATCCTCTC 59 NA Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 2 2 2 80 6 132099609 132104004 GATGACCCAAAGGAAGAAGTC 59 132104044 132104064 CGGATGCTCTACTTGTAAGTC 58 NA Rattus norvegicus 81 Vps72 ENSRNOG00000021081 ENSRNOT00000028625 2 1 1 80 2 196278156 196284102 CTTCACTGAGGAGTCTGGA 58 196284144 196284164 ATGTCAAAGTCAGAGTCTACC 57 NA Rattus norvegicus 81 Th ENSRNOG00000020410 ENSRNOT00000027682 3 1 1 80 1 216074298 216074316 TCAAACCTACCAGCCTGTG 60 216073431 216074256 ATACGAGAGGCATAGTTCCTG 59 NA Rattus norvegicus 81 AABR07056633.1 ENSRNOG00000024494 ENSRNOT00000065354 3 1 1 80 7 33783746 33783764 TTCCACACCCAAGAACCTG 60 33771650 33783707 GCTAGTTTAATCTCTGAAAGGACG 60 NA Rattus norvegicus 81 AABR07051550.1 ENSRNOG00000047915 ENSRNOT00000071666 2 1 1 80 3 16817092 16817315 GGTATCTGGTACCTGTGGG 59 16817358 16817377 ATAGTGACCTTGTCTCCTGC 59 NA Rattus norvegicus 81 Spred1 ENSRNOG00000005209 ENSRNOT00000007028 2 1 1 83 3 108846986 108850932 GATTTACAAACAACTGAGGAGG 57 108850974 108850994 ATCACAGGTAACAACTGTCTC 58 NA Rattus norvegicus 81 Pdzd2 ENSRNOG00000013140 ENSRNOT00000017937 3 1 1 80 2 62410129 62410147 CACTGGATCCAGGGAAGAG 59 62409336 62410086 AGGAGTCGATCCAAACTCAC 60 NA Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000056393 2 1 2 84 4 148048212 148048235 CAGCTCTTCTGTGATAGAAATAGC 60 148045491 148048170 ACATAGTGAGACCCGTTCTG 59 NA Rattus norvegicus 81 Psmd5 ENSRNOG00000018809 ENSRNOT00000025433 3 1 1 80 3 13925756 13927538 GTGTTAGTCAGAGCCACCT 59 13925694 13925714 TTCTTGAGCCAAGTATTGTCG 59 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530,ENSRNOT00000003438 2 2 2 90 17 90696041 90697979 TGGAATCAAAGGGCTCCTC 59 90698033 90698051 AATAGGTTGTAGCAGGCCC 60 NA Rattus norvegicus 81 Zfp830 ENSRNOG00000007578 ENSRNOT00000009970 2 1 1 60 10 70119053 70119072 ATCAGATGGACAAAGAGTGG 57 70119094 70119113 GAGATAGTGTTGACTTGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r51 ENSRNOG00000047370 ENSRNOT00000029114 3 1 1 60 1 66873717 66873738 GGATGTCTTCGTTACAATTCAC 58 66873678 66873697 AGCAGTGGTCTGAATAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344,ENSRNOT00000078148 1 2 2 81 2 116399130 116401696 CAAAGGTCCATTCTGGTACAG 59 116399069 116399090 CTCTGTATGGAGTCTTGTTCAC 59 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645,ENSRNOT00000084851 3 2 2 80 1 267446404 267446422 CAACAACATAGCGACCCAG 59 267445729 267446363 TTATTTGGCACTCCAAAGACTG 59 NA Rattus norvegicus 81 Ube2u ENSRNOG00000023895 ENSRNOT00000035949 2 1 1 80 5 118581267 118584722 GATCTACAGATGTTGCTTTCTTACC 60 118584758 118584778 CTCATCTTTAACCAGCAGCTC 59 NA Rattus norvegicus 81 Pter ENSRNOG00000017328 ENSRNOT00000023446 2 1 1 80 17 80290337 80290356 TCCAGATCATCCGAGTACTG 58 80290395 80304579 CAAATATAGACCTGTCAAGGTGG 59 NA Rattus norvegicus 81 AABR07068042.1 ENSRNOG00000037894 ENSRNOT00000057584 1 1 1 198 9 78969040 78969058 ATATGGGACAGTCCCTTCC 58 78969221 78972831 TTACATCATTCTGGCGGGA 59 NA Rattus norvegicus 81 Cenpf ENSRNOG00000003388 ENSRNOT00000004525 1 1 1 80 13 108160980 108160998 AAACCAGACTTACCCAGGA 58 108158630 108160936 CTGATGTGACCTTCTCCAG 57 NA Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 3 1 1 64 4 149880318 149881911 CAATGTGATGACAGAAGCCC 59 149881938 149881956 AATCCCAGCTTGAGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 rno-mir-350-1 ENSRNOG00000048587 ENSRNOT00000074854 2 1 1 63 13 94849874 94849892 TAAAGTGCACGTGCTTTGG 59 94849829 94849847 GGGTGAAAGTGTATGGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000083572 3 1 2 83 19 57651076 57651816 AAAGGACCTTGTAGAGACTCTC 59 57651859 57651878 TGTCCTTCTCGGTCTTTGTC 60 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000038257 3 1 2 90 19 57651010 57651028 CTATGAAGGGAGAGGAGGC 59 57651080 57653039 GTGGTAGACCTCTACAAGGTC 59 NA Rattus norvegicus 81 Znrf2 ENSRNOG00000049057 ENSRNOT00000072271 3 1 1 80 4 85060230 85060250 TGTACCCTCAGATGAAATGGA 59 85060289 85075714 CTCAGCACATCCTCATTATACG 59 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 3 2 2 134 5 169296482 169300942 GGAGGAAGGAAGAAGAGGA 58 169294256 169294274 GGATTTCCTCCAGCTTCTG 58 NA Rattus norvegicus 81 Atg14 ENSRNOG00000011873 ENSRNOT00000016274 1 1 1 80 15 24348161 24349306 CTGTGCAACAGTGAGTTCTG 60 24348100 24348120 GATGTTTGCGTTCAGTTTCCT 60 NA Rattus norvegicus 81 Ccr7 ENSRNOG00000010665 ENSRNOT00000014163 1 1 1 79 10 87067373 87067391 TGACTTCAACTGCCCAGAG 60 87061444 87061462 AAATGACCAGGAGAGCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccr7 ENSRNOG00000010665 ENSRNOT00000014163 2 1 1 103 10 87067373 87067391 TGACTTCAACTGCCCAGAG 60 87058393 87058411 CATCTTGGCAGAAGCACAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp648 ENSRNOG00000031569 ENSRNOT00000050365 3 1 1 60 13 71656734 71656754 CTTGGAGAGTGAAGAAGAGGA 59 71656774 71656794 AGTGTTGTTCTGAGTTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11f ENSRNOG00000002005 ENSRNOT00000002745 3 1 1 80 14 23996031 23996050 ATAAGCCATCGTTTAGCCTC 58 23993528 23995185 ACATTCTTATCCCACATCGAC 58 NA Rattus norvegicus 81 Car9 ENSRNOG00000017073 ENSRNOT00000023060 3 1 1 80 5 59010604 59010624 CTGGAACTACTGGGTTATGAG 58 59010666 59010787 CAGAGTCAGCTGTACAGTG 58 NA Rattus norvegicus 81 LOC688320 ENSRNOG00000046260 ENSRNOT00000072947 1 1 1 80 10 109912868 109912973 CCTTTGACAGGTCCTTCAG 58 109912712 109912730 CACGGTTAATCATGTCCCT 57 NA Rattus norvegicus 81 Ctnna2 ENSRNOG00000006003 ENSRNOT00000007971 2 1 1 80 4 107964722 107997086 TCAGAAACAGTGATGCCAC 58 107964660 107964679 GAATGGTTGAGGGACATTGG 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 2 2 2 80 8 5686590 5688287 CAGATGATGTCACAGGTACCA 60 5688329 5688347 TGGCTGAGTGAAAGAGACC 59 NA Rattus norvegicus 81 Mir134 ENSRNOG00000035626 ENSRNOT00000053749 1 1 1 65 6 133884554 133884572 TGTGACTGGTTGACCAGAG 59 133884601 133884619 GAGGGTTGGTGACTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr47 ENSRNOG00000018501 ENSRNOT00000024948 2 1 1 60 1 167769346 167769364 TATCTCCTCATCCCACCCA 59 167769304 167769322 GGATCTGTTTGGTACGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164,ENSRNOT00000091573 3 3 3 80 8 117773125 117773146 TGTAAAGTGGAGTCCATATTCC 58 117773183 117774816 CCTGGATATGTCTACATTCTGAG 58 NA Rattus norvegicus 81 Slc10a4 ENSRNOG00000026091 ENSRNOT00000029721 1 1 1 80 14 37768749 37769481 CATGAATCTCAGTATCATCATGACC 60 37768693 37768712 CTGTAGATCCAGAGGCAGAG 59 NA Rattus norvegicus 81 Olig1 ENSRNOG00000028648 ENSRNOT00000002827 3 1 1 60 11 31428831 31428849 TTATCCTACCCTACTCCGC 58 31428873 31428891 ATCTTGGAGAGCTTACGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tph2 ENSRNOG00000003880 ENSRNOT00000005157 2 1 1 80 7 58143960 58143980 CTGAGTTAGACAGATGCTCTC 58 58139439 58143918 CGTTGTCCTTGAATCCTGG 59 NA Rattus norvegicus 81 Med14 ENSRNOG00000003792 ENSRNOT00000066480 1 1 1 80 X 11055306 11058140 CTCAGCAACAGCCATTTCC 60 11058184 11058202 TGCTGTGATAGGATGCAGG 60 NA Rattus norvegicus 81 Zfp287 ENSRNOG00000003215 ENSRNOT00000004291 1 1 1 80 10 49148391 49148411 CAAGAAATCCCAGAGGAAGAC 58 49146227 49148351 TGTCACTGATTCTTTGGTCAC 59 NA Rattus norvegicus 81 Cdh9 ENSRNOG00000033837 ENSRNOT00000043050 3 1 1 80 2 67049330 67049348 ATCAACGACAATGAGCCCA 60 67049391 67053418 AACAGAGGTACCAACTCCAG 59 NA Rattus norvegicus 81 Bricd5 ENSRNOG00000009611 ENSRNOT00000012794 3 1 1 105 10 13840156 13840174 CCACTCTAGTGGATGTGGC 60 13840243 13840333 CAGATGTAGCCACTTTGCC 59 NA Rattus norvegicus 81 Tas2r144 ENSRNOG00000028130 ENSRNOT00000037194 3 1 1 60 4 71589532 71589552 AAGACCAATGTACTCAACCTG 58 71589571 71589592 TGAACAAAGGAATGAAGATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr694 ENSRNOG00000006415 ENSRNOT00000008396 2 1 1 60 3 78112617 78112636 CATTGTCCTCACCATCTCCT 59 78112576 78112596 AGTGAGAAAGAAGTACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thnsl1 ENSRNOG00000033076 ENSRNOT00000045984 3 1 1 80 17 88099326 88099918 CGACTTACTTGGCTAAAGCC 59 88099960 88099979 TGGTGACATCTGGTAAAGCT 59 NA InUTR Rattus norvegicus 81 Slc14a2 ENSRNOG00000061714 ENSRNOT00000078016 3 1 1 80 18 74570428 74571443 AAGAACTGGCTGAAAGATAAGC 59 74570369 74570388 GACAAACATCACCTGAGCTG 59 NA Rattus norvegicus 81 Apobec3b ENSRNOG00000016852 ENSRNOT00000037134 2 1 1 80 7 121125844 121125864 TCCTATCTGTGCTACCAACTG 59 121125901 121126743 CTGTTCACCTTTCTTGTATAGCAG 60 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 3 2 2 81 16 7040472 7043930 ATTGAAGGAAAGTTGCCACC 59 7043974 7043992 GTCTCCTGCTCAACATGGT 60 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000047696 ENSRNOT00000075203 3 1 1 81 1 116872215 116872586 CAGTCATGATTTAGAGCTTCACC 60 116872625 116872645 CTCATCCAGAACCACATTGTC 59 NA Rattus norvegicus 81 Olr155 ENSRNOG00000017234 ENSRNOT00000023147 2 1 1 60 1 169590361 169590379 TGGGATGGAAGACAAACAC 58 169590400 169590421 GGTGATTAAGTACATGGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000041527 3 1 2 82 1 72785136 72785574 TCAGACCAATATCCACAGGTC 59 72785618 72785636 TCAGGAATCCAGAGGAGGA 59 NA Rattus norvegicus 81 Pcdhb1 ENSRNOG00000020103 ENSRNOT00000027229 1 1 1 60 18 30285593 30285613 AACTGGTCATTCTTGTTCAGG 59 30285635 30285653 TTGAGTGAGGCAGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb1 ENSRNOG00000020103 ENSRNOT00000027229 3 1 1 60 18 30285134 30285152 TAACATACTCCCTGCTGCC 59 30285173 30285194 ATGGAGATGTAAGCAAAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hap1 ENSRNOG00000014819 ENSRNOT00000090702,ENSRNOT00000020603 2 2 2 81 10 88264832 88264850 GTCCTAATCCACTGCCCAG 60 88264443 88264788 TCCCGTTCTTTCTCTTCCAG 60 NA Rattus norvegicus 81 Nop2 ENSRNOG00000018453 ENSRNOT00000024938 1 1 1 80 4 157654906 157655069 GACGAACAAGGATGAGAAGGA 60 157655107 157655129 TTGACTGAGTCTATAGCACTGAG 60 NA Rattus norvegicus 81 Nop2 ENSRNOG00000018453 ENSRNOT00000024938 2 1 1 80 4 157652163 157652185 CCACCTACTATTCTTATGGAGAC 58 157652219 157652377 CTAAGAACTCTATCAACTCAGACAG 59 NA Rattus norvegicus 81 Gabpb1 ENSRNOG00000010659 ENSRNOT00000045443 1 1 1 80 3 119113899 119113917 TGTGACAATACATGCTGCC 59 119113518 119113860 GATACTCCTGTTTCATCTGTAAGG 59 NA Rattus norvegicus 81 AABR07017745.4 ENSRNOG00000061290 ENSRNOT00000072978 3 1 1 94 15 30557607 30606115 CTCCTAATGCTCAGGAGGAG 59 30606172 30606190 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Olr468 ENSRNOG00000056132 ENSRNOT00000085420 3 1 1 60 3 73302624 73302642 AGATCGAGCAGAGCTTCAG 59 73302664 73302684 CGTGATGAGGTAAATGAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529,ENSRNOT00000085225 3 2 3 60 20 3985660 3985680 TATGATCACCACTACCTGCAC 60 3985952 3985972 CAAATAGCAGTGGCTCTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 2 2 2 80 7 126127689 126127708 ACATGTCAGAAGAATGTGCC 59 126127751 126128426 CTCATCCACGTCAACACAG 59 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000076441 1 2 4 98 9 111219326 111220645 TAGGACCACTTCGAAGCAG 59 111219246 111219264 ACTCATGGTGATCCTCCTG 59 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 2 2 2 80 13 51194015 51199862 GAGACACAAAGAAGACCTGGA 60 51193955 51193973 CGGATATAGGAAGCCAGCA 59 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 3 2 2 80 13 51194015 51199861 AGACACAAAGAAGACCTGGA 59 51193954 51193972 ACGGATATAGGAAGCCAGC 59 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974,ENSRNOT00000082392 1 2 2 80 16 32864335 32864353 TCAACTACTCACCCAACGA 58 32861322 32864294 TTTCAAACACCTTACAGAGACC 59 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974,ENSRNOT00000082392 2 2 2 80 16 32864330 32864348 TACTCACCCAACGAAGGAC 59 32861317 32864289 GAGCATTTCAAACACCTTACAG 58 NA Rattus norvegicus 81 Vom1r32 ENSRNOG00000048505 ENSRNOT00000044754 2 1 1 60 1 71844718 71844739 TCTTGTTCCTGTTCATAGAGGT 59 71844759 71844778 CTTTGCCAAATCTGGGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps29 ENSRNOG00000032542 ENSRNOT00000046690 1 1 1 60 3 147490551 147490569 AATACGGGCTGAACATGTG 58 147490509 147490527 ATGAAGCCTATGTCCTTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359986 ENSRNOG00000025536 ENSRNOT00000039731 1 1 1 60 15 52712726 52712745 GCATCCGAGTACATTTGTCC 59 52712685 52712706 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr375 ENSRNOG00000032600 ENSRNOT00000040608 1 1 1 60 1 230605009 230605030 CATCCTAGTTCTGACAGTACCA 59 230605048 230605069 AGAAGCGATGAACACATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr375 ENSRNOG00000032600 ENSRNOT00000040608 3 1 1 60 1 230604494 230604518 CTTCTCTATTTGATGATCCTCTGTG 59 230604535 230604554 TGTACTTGGACACTACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr336 ENSRNOG00000021078 ENSRNOT00000028617 3 1 1 60 1 229417296 229417317 GGTTATGACAAGATGGCTTCTG 60 229417337 229417356 TCAGAGGATTCAACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntn5 ENSRNOG00000021016 ENSRNOT00000028524 2 1 1 84 1 101674700 101675038 CCCTGTCAACGAATTCCAG 59 101675476 101675494 AGTAGCCTTGACACTGTGG 59 NA Rattus norvegicus 81 Ntn5 ENSRNOG00000021016 ENSRNOT00000028524 3 1 1 85 1 101674700 101675038 CCCTGTCAACGAATTCCAG 59 101675477 101675495 CAGTAGCCTTGACACTGTG 58 NA Rattus norvegicus 81 Cideb ENSRNOG00000020377 ENSRNOT00000027612 3 1 1 80 15 34441134 34443649 TAGATAAGGAGGATGGGACTG 58 34441074 34441093 CTAGAGCCATCAAGCATGTG 59 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 2 2 2 80 19 43937547 43937566 GTTGGATGTGTATGACGTGC 60 43936506 43937505 GGAGGAACATCATACACCGA 59 NA Rattus norvegicus 81 Eapp ENSRNOG00000004509 ENSRNOT00000006030 1 1 1 80 6 75589124 75589143 CTCCAGGATGACTATGACCC 59 75581885 75589084 CACTTCATCTTCAGAACTGCTC 59 NA Rattus norvegicus 81 Dnai1 ENSRNOG00000013734 ENSRNOT00000067657 2 1 1 80 5 58010465 58012013 ATCTACAAGTGCTCCAAATCCT 60 58012054 58012072 TAACACAGCGTCTACTGCC 60 NA Rattus norvegicus 81 Fgf23 ENSRNOG00000052205 ENSRNOT00000078299 3 1 1 81 4 159622543 159622561 CCAGGAACAGCTATCACCT 59 159622604 159627834 ATCAGGGCACTGTAGATAGTC 59 NA Rattus norvegicus 81 N4bp2 ENSRNOG00000027152 ENSRNOT00000031792 3 1 1 80 14 44057720 44059610 GAGGACAGAAATTCTAGCCCA 60 44057660 44057680 CTTTGGAGATGCAGATGAGAC 59 NA Rattus norvegicus 81 Fzd8 ENSRNOG00000059244 ENSRNOT00000058837 1 1 1 60 17 63000726 63000744 TCTTCTGGATCGGCTTGTG 60 63000768 63000786 GTAGAGACAGTGGCGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfn3 ENSRNOG00000047752 ENSRNOT00000072298 1 1 1 151 17 9746753 9746771 TATCCGTGACTACCTGCTG 59 9746885 9746904 TCTTATTGAGGATGCCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911035 ENSRNOG00000045648 ENSRNOT00000042245 2 1 1 60 1 149963920 149963938 GCAAGCCTCTCCTCTATCC 59 149963960 149963980 GCCAGTGTCATTTGAATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595,ENSRNOT00000089473 2 2 2 80 6 93513239 93513257 AGATCAAACAGCAGGAGGA 58 93513300 93515542 TGCTTTCAGTTTCTTCCCTC 58 NA Rattus norvegicus 81 LOC654482 ENSRNOG00000043410 ENSRNOT00000068290 2 1 1 80 8 6223073 6223094 CAGTATGAAGATGTGCTAAAGC 58 6220625 6223032 AGGATGTTTCCGAACACTC 58 NA Rattus norvegicus 81 Sardh ENSRNOG00000006916 ENSRNOT00000009555 3 1 1 80 3 5777964 5777983 GTGTTTCAAGAACGACAGGG 60 5775814 5777923 GTAGTCGTAGTCTAGGACCTG 59 NA Rattus norvegicus 81 Fam83f ENSRNOG00000018330 ENSRNOT00000024835 3 1 1 88 7 121908291 121909488 TCTTACAGCTTTACCTGGAGC 60 121909537 121909556 TCTATGTCAAAGGGCTCCAC 60 NA Rattus norvegicus 81 Olr6 ENSRNOG00000045783 ENSRNOT00000072404 2 1 1 60 1 70481159 70481178 GGAGATGTGCTATGTGTCTG 58 70481200 70481219 GAGTCCATTCCATAGTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnl3 ENSRNOG00000028461 ENSRNOT00000033677 1 1 1 80 16 7099035 7099395 GGACTTACAAGGAGTATGCAG 58 7098975 7098994 AGGTGAGATAATGAAGCACG 58 NA Rattus norvegicus 81 Crygn ENSRNOG00000009226 ENSRNOT00000012285 1 1 1 85 4 6903267 6905955 TGTAGGCATGCATGGAGAG 60 6906004 6906022 AATCCTCCACGAACTCCAG 59 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 1 2 2 80 10 70150132 70150151 CCTGGCTGACATGATAAACC 59 70150193 70150446 GGCTCATATGTACCCTTCAC 58 NA Rattus norvegicus 81 Cklf ENSRNOG00000012752 ENSRNOT00000017127 3 1 1 87 19 912356 912379 CACCATCATTCTCTTTCTCATAGC 60 908333 912312 GATAACATCAAGCAAAGGCCA 59 NA Rattus norvegicus 81 Ndrg3 ENSRNOG00000036813 ENSRNOT00000055232 2 1 1 80 3 153035667 153035948 AGATTTGCACTCAATCATCCG 59 153035607 153035626 GTCAATCCAGCCTTTAGCAC 59 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204,ENSRNOT00000083181,ENSRNOT00000079694 3 3 3 80 2 240642916 240642934 CAATGTTCTGCAGGTCCAG 59 240643071 240648125 TTGATATGGGCTGTCATTAGGT 59 NA Rattus norvegicus 81 AABR07027811.3 ENSRNOG00000053155 ENSRNOT00000052073 2 1 1 65 17 44760227 44760245 TCGACAGAGTTGCTGATCC 60 44760273 44760292 GAAGTCCTGAGCAATCTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr485 ENSRNOG00000009747 ENSRNOT00000012912 2 1 1 60 3 73542435 73542454 CCTCCCTCCTCATTGTACTC 59 73542394 73542413 TTCATCCTGAGAATTGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690035 ENSRNOG00000008244 ENSRNOT00000050558,ENSRNOT00000011056 1 2 2 80 6 93563584 93563603 GCACTGTCTGCAAATAAACG 58 93563645 93565104 AGTTAAATCCAACGAGCCAC 59 NA Rattus norvegicus 81 Blcap ENSRNOG00000024437 ENSRNOT00000033525 1 1 1 60 3 154041748 154041766 GCCCTCTTTCTCATCTGCT 60 154041706 154041724 AATCGGAGCAGTGGTACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psgb1 ENSRNOG00000027288 ENSRNOT00000037132 2 1 1 80 1 79187828 79187848 TTGTACACCCTAGGAATTCTG 57 79187890 79189080 AAACACAAGACTCTCCACC 57 NA Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 2 2 2 80 9 85566394 85566413 CTCACATCTTGCAGAAAGCA 59 85563574 85566354 CAATTAGGATTGCAGTTGTCAC 58 NA Rattus norvegicus 81 Olr1605 ENSRNOG00000021557 ENSRNOT00000029318 3 1 1 60 15 12128789 12128810 CAGGATTTGTTTGCTTATGGTG 59 12128750 12128770 CATGAATCCATCCAAAGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sord ENSRNOG00000017291 ENSRNOT00000023350 3 1 1 81 3 114201218 114202393 CTCAAGTAGTGGTGATTGACCT 60 114202434 114202453 GCAACCTGGATGGTAAAGTC 59 NA Rattus norvegicus 81 Lsm7 ENSRNOG00000019552 ENSRNOT00000026551 1 1 1 85 7 11724986 11725525 CAAGATGGCGGACAAAGAG 59 11725573 11725592 GGAACTTGACTCGAATGGTC 59 NA InUTR Rattus norvegicus 81 Plk5 ENSRNOG00000034102 ENSRNOT00000042204 1 1 1 92 7 12218979 12218997 AAGTGCGCTACTACTTTCG 58 12218167 12218926 AGAAATTACTGGGTTTCAGGTC 58 NA Rattus norvegicus 81 Cnga1 ENSRNOG00000004778 ENSRNOT00000006469 3 1 1 80 14 38156629 38156651 CTGAAGAATCAGAGAATGAGGAC 59 38156691 38158186 AGTAATGCTCCCTCTGGGA 60 NA Rattus norvegicus 81 Ocrl ENSRNOG00000003875 ENSRNOT00000005267,ENSRNOT00000082363 3 2 2 80 X 134746153 134746171 GTTGCATGGGAAGGAACAG 59 134746212 134749149 GTTTCTTCTGCTTCTTGAACAC 59 NA Rattus norvegicus 81 A2ml1 ENSRNOG00000007247 ENSRNOT00000009557 1 1 1 80 4 161901878 161902458 CGTTAACCAAGATGTATTGCC 58 161901818 161901836 GGAAACTGATTGTCTGCGA 58 NA Rattus norvegicus 81 Duoxa1 ENSRNOG00000018005 ENSRNOT00000024245 2 1 1 81 3 114241587 114242260 TCACATTAGCCACAGGACTG 60 114241525 114241543 TTCAGTCTGTGAGGTTGCA 59 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 2 1 1 61 15 34252026 34252046 TCTGCAGTTTCACGTTAACTC 59 34252066 34252437 TTATGTTGAAGAAGTTGCCGTG 60 NA DesignNoJunction Rattus norvegicus 81 Clec12b ENSRNOG00000053638 ENSRNOT00000089712 2 1 1 80 4 163145856 163146222 AAGAAAGGGATCTCCTTCAGTC 60 163145797 163145816 TGCTAGATGAATCCCAGGAC 59 NA Rattus norvegicus 81 Olr821 ENSRNOG00000046688 ENSRNOT00000044838 3 1 1 60 4 72670744 72670762 GTCGATATGGCCTATGCCT 59 72670783 72670804 TCTCATCCAAGAGGTTTACCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976,ENSRNOT00000085991,ENSRNOT00000002981 3 3 3 80 14 34456753 34456775 CTGGTAATGCTAGAAAGATGGAC 59 34456812 34459691 CAGTGATCTCTTTATGTTTGCG 58 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325,ENSRNOT00000070819 2 3 3 80 9 95101066 95103685 CAGACAGTGATGATAACAGTCTG 59 95101008 95101026 TCACTTGGAGCCAGTTGAG 60 NA Rattus norvegicus 81 Nup214 ENSRNOG00000023393 ENSRNOT00000037164 3 1 1 80 3 11012308 11012327 CCTGTTACAGAGAAGCAGAG 58 11012369 11012792 GAAGTGTGCAATCTCCTCTC 58 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131,ENSRNOT00000028132 2 3 3 80 1 82579639 82579657 TGATAACACCCAGACCCAG 59 82579265 82579595 GCTGAGATTCTGAGCTGAC 58 NA Rattus norvegicus 81 Krtap7-1 ENSRNOG00000043017 ENSRNOT00000064103 3 1 1 60 11 29641361 29641379 TGGAACCATCTACAGCTCC 59 29641319 29641340 TGGATTCTGGAAGTTACTAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpn1 ENSRNOG00000042195 ENSRNOT00000021096 2 1 1 81 15 33557182 33557299 TTGGCAATGTGGACTATGGT 60 33557343 33557361 ATAGTCACCCGGTTGACTG 59 NA Rattus norvegicus 81 Klhl14 ENSRNOG00000015418 ENSRNOT00000020697 2 1 1 80 18 12531286 12534954 AATCATTTGAAAGGCTTCTCCC 59 12531227 12531248 GAGTATATTCCACTGGTCACCT 59 NA Rattus norvegicus 81 Pcdhb14 ENSRNOG00000020059 ENSRNOT00000027168 2 1 1 60 18 30528871 30528889 TCCTTTCCTCCTGAAACCT 58 30528912 30528931 CAGTGCTCTTTCAGTTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000021156,ENSRNOT00000079745 2 2 2 80 2 123278578 123278597 ATTCCTCTCCTCCATGTCTG 59 123277916 123278537 TCAAACTTTGAAGCTAGCAGC 60 NA Rattus norvegicus 81 Gabarapl1 ENSRNOG00000053362 ENSRNOT00000077356 3 1 1 82 4 163297941 163297959 GAGAAGGCTCCTAAAGCCA 59 163298004 163298941 TAGAACTGGCCAACAGTGAG 60 NA Rattus norvegicus 81 Vom2r24 ENSRNOG00000049838 ENSRNOT00000072660 3 1 1 82 8 3990567 3990585 CTTACAGGACCATCGTGGG 60 3984404 3990522 GGTCCAAATGTAAGCTGTGG 59 NA Rattus norvegicus 81 Aqp6 ENSRNOG00000053181 ENSRNOT00000083570 3 1 1 81 7 141259931 141260207 ATCTCATTGGGATCTACTTCAC 58 141260248 141260267 GCAAACTTCCCAACAATGAC 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000378 ENSRNOT00000049437 3 1 1 80 20 26589148 26589166 ATGCAGGATCTGCAGATCC 60 26564239 26589107 ATTCACAAGGGTAGTAACCTGG 60 NA Rattus norvegicus 81 LOC680045 ENSRNOG00000047468 ENSRNOT00000073445 1 1 1 84 8 117223500 117223518 GAAAGTGCCGGAGAATACC 58 117223566 117230179 GTTGTTTAGCTGGCTCCTC 59 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 3 2 2 80 7 45372138 45372158 CATTGCCTCTGTTAATCGTGG 60 45372194 45379109 GGTCTTCTAGAAACTTATCTATGCC 59 NA Rattus norvegicus 81 AABR07028748.1 ENSRNOG00000030638 ENSRNOT00000043042 3 1 1 100 17 84613313 84613332 CTCTTCCACCTTTGATGCTG 59 84613134 84613250 GCTGAGGTACCTGATTGGT 59 NA Rattus norvegicus 81 Rheb ENSRNOG00000050578 ENSRNOT00000071737 2 1 1 80 4 6856595 6856614 ATTCACCAAGCTGATCACAG 58 6856656 6866082 ATGGAATATTCATCCTGCCC 58 NA Rattus norvegicus 81 LOC687088 ENSRNOG00000059135 ENSRNOT00000072772 3 1 1 60 1 230217229 230217248 AGAAGTGACAGAGTTCCTCC 59 230217270 230217289 GAGTGGGATCTGTAGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctpp1 ENSRNOG00000017850 ENSRNOT00000024074 3 1 1 87 1 198703829 198705711 CAGAACTCTTTCAGTGGAAGTC 59 198703763 198703781 CTAAGCTCCTCCTGAAGGG 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 3 2 2 80 6 42276301 42276321 ATGGACAGTTCCAGTATAGGC 59 42276359 42278089 CCATCCTTCTAATCGTGATTCTG 59 NA Rattus norvegicus 81 Mir215 ENSRNOG00000036241 ENSRNOT00000054364 3 1 1 60 13 103250870 103250890 ATGATTTGACAGACAGTGTGG 59 103250907 103250930 CAGAATATTGGCCTACAGAATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000061249 1 1 2 94 17 6688532 6688550 GTTTGCTGACTACAGGCTG 59 6688606 6689005 GCATTTCTCCTTCTAGAAGCT 58 NA Rattus norvegicus 81 Pax5 ENSRNOG00000024729 ENSRNOT00000033373 1 1 1 80 5 60171671 60171689 GTGTCAGCTCCATCAACAG 59 60158858 60159422 TGAGGTGCGAAGAATTTGG 59 NA Rattus norvegicus 81 Alpk3 ENSRNOG00000011659 ENSRNOT00000015898 1 1 1 80 1 142921289 142921307 TGTATCGCTGTACCATCCA 58 142921350 142921499 TGAAGCCAGACAATACTTCC 58 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 1 2 2 80 11 84045613 84045632 TACTTTGGCAAGATCAGCGA 60 84044727 84045572 AAAGTCCAGAATCTCGTCCAG 60 NA Rattus norvegicus 81 Cts7 ENSRNOG00000033540 ENSRNOT00000043686 3 1 1 82 17 3281866 3281885 TCAAATGGCACACTATGCAG 59 3281930 3282036 CTCACCAGTCATGTCACCA 59 NA Rattus norvegicus 81 Cyb5r1 ENSRNOG00000003973 ENSRNOT00000060669 1 1 1 104 13 51235160 51235178 AAAGGACATAATCCTGCGG 58 51235246 51235581 TAGGTCCAGTCTTCTGGAG 57 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000048215 ENSRNOT00000075065 1 1 1 81 17 43617431 43617449 TCCTGGAGAACGTAATCCG 59 43617494 43617512 TAGACCACGTCCATAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ap1m2 ENSRNOG00000043093 ENSRNOT00000066340 3 1 1 80 8 22333893 22334118 CACAGCAATCTCTACTTGGT 58 22333832 22333852 CACAGTCTTGTACAGAAAGGA 58 NA Rattus norvegicus 81 Serinc3 ENSRNOG00000009552 ENSRNOT00000013445 3 1 1 80 3 160031459 160032844 TCAGCTGAAGAAGATTCCTG 57 160031398 160031416 TCACAGTCTTTCTCTGCCT 58 NA Rattus norvegicus 81 Ldlrad1 ENSRNOG00000037795 ENSRNOT00000057372 1 1 1 80 5 126818035 126818928 ACTTGTGTCGAGATTTGCC 59 126818970 126818990 CTGAGTAGATCCAGGAGTCTG 59 NA Rattus norvegicus 81 Clec9a ENSRNOG00000051690 ENSRNOT00000088108 2 1 1 80 4 163185854 163185873 GTGGGAGTGTTTCAAGATGG 59 163185916 163186975 TGTTGGCAACAAGTCAGAG 58 NA Rattus norvegicus 81 Gins3 ENSRNOG00000011863 ENSRNOT00000015795 1 1 1 68 19 9839576 9839594 TATCTCCCAGTCACTGCTG 59 9836914 9836932 GAATTCTGGGAGGAGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 LOC684762 ENSRNOG00000045646 ENSRNOT00000072119 1 1 1 81 17 43633907 43633925 ACTTCAAGACCGACCTTCG 60 43633970 43633988 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582,ENSRNOT00000040306 1 2 2 80 3 104385188 104385208 ATCTGTGACAACCTACTACCC 59 104383556 104385146 GTTTGGTCGGATACTGGTG 58 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 1 2 2 80 7 50219001 50221986 ACAATTTACTTTCAAGGTGCCC 60 50218942 50218964 GAGAAGCGATCAAAGTCATACAC 60 NA Rattus norvegicus 81 Rps6kb1 ENSRNOG00000003919 ENSRNOT00000005226 3 1 1 84 10 73865209 73865227 CTCTGAGGATGAGCTGGAG 59 73855778 73857040 TTCCATGCCAAGTTCATATGG 59 NA Rattus norvegicus 81 Npepo ENSRNOG00000017505 ENSRNOT00000023638 1 1 1 80 17 699024 718537 GAATGCAGGTGTTAAGACCC 59 718578 718598 TGAGTCCATTCTTGACAACAG 58 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 1 2 2 80 3 11704124 11706117 ACTTGGTCTACCACTCCAG 58 11706160 11706179 TCTTGGAGGTAAAGGATGGT 58 NA Rattus norvegicus 81 Tmem126a ENSRNOG00000022748 ENSRNOT00000038333 1 1 1 80 1 156285026 156287288 GAATCAGACAGGAATCTGCT 57 156287331 156287349 ACTGTTTGCTATTAGGCCC 58 NA Rattus norvegicus 81 Tmem54 ENSRNOG00000024259 ENSRNOT00000033285 1 1 1 91 5 147291662 147293941 CCATTGTGGTCATCCTTGC 59 147294085 147294103 ACTCAGGCTAAACACGGTC 60 NA Rattus norvegicus 81 Smarca4 ENSRNOG00000009271 ENSRNOT00000013165 3 1 1 80 8 22691465 22694339 ATTATTGAGAACGCCAAGCAG 59 22694380 22694399 ATAGTAGGACTGCAGACCAC 59 NA Rattus norvegicus 81 Mcmbp ENSRNOG00000020394 ENSRNOT00000027644 2 1 1 80 1 200129441 200130696 AGAACCTGTCAGTTTGTGTC 58 200129380 200129398 TGCATGAGTGAGGAATCCA 59 NA Rattus norvegicus 81 Vom1r23 ENSRNOG00000047128 ENSRNOT00000059638 2 1 1 60 1 61686856 61686876 TTTCTTTCTCCTCTACCACTG 57 61686816 61686836 TATAGACCTCAACCTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045411.1 ENSRNOG00000049990 ENSRNOT00000071045 2 1 1 83 20 46715883 46716242 GACCACACCTCTGAGAACC 60 46716288 46716307 CTGAGCCTCTTTCCTCTCAG 60 NA Rattus norvegicus 81 AABR07063459.1 ENSRNOG00000049435 ENSRNOT00000071242 3 1 1 91 6 31011738 31011790 AAATTCACGCATCATCCCA 58 31011843 31011863 TGATAAAGTTCATGCCTCTCG 58 NA Rattus norvegicus 81 Efcab1 ENSRNOG00000050091 ENSRNOT00000071986 3 1 1 80 11 90226235 90226914 TGGACAGAGTATTTCGAGGT 58 90226174 90226194 ACAGTGATAATCCATGAACCC 58 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000085887,ENSRNOT00000009904 1 2 3 80 4 162019665 162019683 GATTGGCTCTGAAACTCGG 59 162018981 162019622 ATGTTAGCACTAAGACACCG 58 NA Rattus norvegicus 81 Cdca4 ENSRNOG00000013898 ENSRNOT00000018596 1 1 1 141 6 137421115 137421133 GGTTTGAACGAAAGCTCCG 60 137398153 137421010 TAGCAAACATCCTGTCCGG 60 NA InUTR Rattus norvegicus 81 Mfn2 ENSRNOG00000046447 ENSRNOT00000065985 1 1 1 80 5 164563647 164565098 CCAAGTTCAGCAAGAATTGTC 58 164563587 164563605 TCCTGCTCCAGATTATCCC 58 NA Rattus norvegicus 81 RGD1308112 ENSRNOG00000039568 ENSRNOT00000060656 1 1 1 80 13 51370703 51370724 CTCCAAATCACTAAACAGCTGG 60 51365973 51370666 GTCAACCATGTCTTTCTTCTCTG 60 NA Rattus norvegicus 81 Tnnc1 ENSRNOG00000018943 ENSRNOT00000025606 1 1 1 81 16 7295048 7295066 ATCACGGAAGATGACATCG 57 7295111 7295215 CCAGGAACTCGTCATAGTC 57 NA Rattus norvegicus 81 Olr677 ENSRNOG00000051514 ENSRNOT00000087979 3 1 1 60 3 77882364 77882384 TACTGAAGGACGACTTAAAGC 58 77882324 77882345 CAAGACAACAACTGTAATGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhcr24 ENSRNOG00000006787 ENSRNOT00000009402 1 1 1 80 5 126164929 126167999 CCAGAAACAGGTACGGGAG 60 126168043 126168061 GAGACAGTGAGCCATCCAG 60 NA Rattus norvegicus 81 Olr1400 ENSRNOG00000045932 ENSRNOT00000046027 1 1 1 60 10 34631928 34631949 CTGTGAGATGCCCATATTTCTG 59 34631967 34631988 CTTCACCTCTGTTCCATTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hemk1 ENSRNOG00000015458 ENSRNOT00000020781 2 1 1 87 8 116083542 116084779 ACCTTGATATAACCTCAGAGGG 59 116083476 116083494 AAGATGTAGGGAGGGTTGC 59 NA Rattus norvegicus 81 Hs1bp3 ENSRNOG00000006062 ENSRNOT00000007991 3 1 1 82 6 33525577 33527739 GCTGCTAGAATTCTTAGGCAC 59 33527783 33527801 TGGCTGTCTCATCCAAGAC 59 NA Rattus norvegicus 81 AC096404.1 ENSRNOG00000000574 ENSRNOT00000000700 1 1 1 103 20 29579060 29579568 TCTATCTGCATGGGATCGG 59 29577788 29577806 ATCAGTAGGGACACCACCT 60 NA Rattus norvegicus 81 Rabif ENSRNOG00000004424 ENSRNOT00000005845 2 1 1 135 13 51317511 51317529 AGAACGAGCTAGTGTCAGC 60 51328897 51328915 GGCTTCTTCCTCATGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Obox5 ENSRNOG00000029702 ENSRNOT00000045660 2 1 1 80 9 101197786 101198245 GAGAAGGAGATCAAGGTCTGG 60 101198286 101198305 TGTCTCTGGAAGTGCTTCTG 60 NA Rattus norvegicus 81 Obox5 ENSRNOG00000029702 ENSRNOT00000045660 3 1 1 81 9 101197789 101198246 AAGGAGATCAAGGTCTGGT 58 101198290 101198309 CATTTGTCTCTGGAAGTGCT 58 NA Rattus norvegicus 81 Vegfb ENSRNOG00000021156 ENSRNOT00000050891 2 1 1 80 1 222241459 222241765 CAGAAGAAAGTGGTGTCATGG 59 222241399 222241417 CATGCTCAGAGGTACCACC 60 NA Rattus norvegicus 81 Rn60_X_0752.1 ENSRNOG00000051243 ENSRNOT00000075937 3 1 1 60 X 74295881 74295899 ATGACTGATCCCGTGAGAC 59 74295923 74295941 GCCACAGGATGATAGAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164l2 ENSRNOG00000009505 ENSRNOT00000012626 2 1 1 91 5 151414688 151416249 ACAAGTACGACAGGGAGTC 59 151416304 151416322 CTCAGTACCAGCACAATGC 59 NA Rattus norvegicus 81 Gif ENSRNOG00000021001 ENSRNOT00000028507 1 1 1 80 1 228127113 228127131 CATTGCCCAGATTCTCCCT 60 228127175 228128416 ACTTCATGATCAGGGCCAC 60 NA Rattus norvegicus 81 Map2k4 ENSRNOG00000003834 ENSRNOT00000005293 3 1 1 80 10 52270575 52290633 AAGGCACAAAGTAAACGCA 59 52270513 52270532 ATTCAGAGTAAACCGTGCTG 58 NA Rattus norvegicus 81 Klhl12 ENSRNOG00000004193 ENSRNOT00000005832 3 1 1 80 13 51299793 51299811 AAGAAGTTTCACCTGAGGC 58 51299854 51308137 CACTTCATTGGCTCCTAGTC 58 NA Rattus norvegicus 81 Mzt2b ENSRNOG00000001834 ENSRNOT00000002511 1 1 1 80 11 89277617 89277637 GAGGAGATGGAGCTGTATGAG 60 89277674 89277853 CAAGTCCACTAGAATCTTGAACAC 60 NA Rattus norvegicus 81 Rpl3l ENSRNOG00000014641 ENSRNOT00000019660 3 1 1 80 10 14099871 14099889 TTCAAGACCATCTTTGCCG 59 14099930 14100996 TTTCTTCTTACTCTTGTGCCAG 59 NA Rattus norvegicus 81 Ctsq ENSRNOG00000017946 ENSRNOT00000024208 3 1 1 81 17 3995054 3995755 CTACCAGAAAGGTGTTTATCATGAG 60 3995793 3995812 CTCAAATCCATAGCCCACCA 60 NA Rattus norvegicus 81 AC124205.1 ENSRNOG00000012595 ENSRNOT00000016814 1 1 1 81 5 140486349 140486374 CAGGGATATGAGTGGATATGCA 60 140486416 140486434 CTCTTGTTGCCGCATACAG 59 NA Rattus norvegicus 81 Vom2r48 ENSRNOG00000028538 ENSRNOT00000039463 1 1 1 80 4 156326528 156349843 TCTACAACATTCCACAGATCAG 58 156349884 156349902 ACTGGTAAGGAGACTGGAG 58 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 1 1 1 60 4 98481763 98481783 CAGGCTGATGATATTGCAACC 60 98481805 98542657 CGAATGTGGGAGGAGACTC 60 NA DesignNoJunction Rattus norvegicus 81 Cpa4 ENSRNOG00000010463 ENSRNOT00000013880 2 1 1 80 4 57891671 57891691 AATGCAACACAATGAAGGGAG 60 57891733 57895241 TCGTGGTAAATAGCCTCCG 59 NA Rattus norvegicus 81 Tbcd ENSRNOG00000036658 ENSRNOT00000054913 1 1 1 80 10 110759500 110759518 CGAGAACTGTCTGCAAAGG 59 110759561 110760344 TAGTGCTGGGAATACGTGAG 59 NA Rattus norvegicus 81 C8g ENSRNOG00000028701 ENSRNOT00000061904 2 1 1 83 3 2725074 2725350 ACTATACACCCGCACACTG 60 2725009 2725027 TCTTCTGTCAGGTTGGCTC 59 NA Rattus norvegicus 81 Per1 ENSRNOG00000007387 ENSRNOT00000057136 1 1 1 80 10 55687384 55687406 GAGTTCTCACAGTTCATCTTCTG 59 55687444 55687585 GAGTTTGTACTCTTGCTGCTC 59 NA Rattus norvegicus 81 LOC690918 ENSRNOG00000042246 ENSRNOT00000067992 2 1 1 119 5 56798684 56798702 TAACTGGAGACGCTGAGAG 59 56799037 56799057 TCGGATTTATGTCATCAGGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC690918 ENSRNOG00000042246 ENSRNOT00000067992 3 1 1 119 5 56798683 56798702 CTAACTGGAGACGCTGAGAG 60 56799035 56799056 CGGATTTATGTCATCAGGTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Npy ENSRNOG00000009768 ENSRNOT00000013145 2 1 1 85 4 79563030 79563048 CAAGAGATCCAGCCCTGAG 60 79563096 79564868 GGTCTTCAAGCCTTGTTCTG 59 NA Rattus norvegicus 81 LOC498236 ENSRNOG00000025987 ENSRNOT00000036094 3 1 1 80 13 53030914 53031563 GAATATGCAGCCTTCAGGT 58 53030852 53030872 TAGGATGTAGAAAGTCTGCAC 57 NA Rattus norvegicus 81 Slc12a3 ENSRNOG00000057072 ENSRNOT00000081246 1 1 1 80 19 11143358 11144363 GTTCCTCAAGCAGGAAGGT 60 11143296 11143315 ACAAGTCCATCAGTCAGCTC 60 NA Rattus norvegicus 81 Tex11 ENSRNOG00000025672 ENSRNOT00000041731 1 1 1 80 X 70833262 70835001 CTAACAAGGAGCATTTAGATCCAG 59 70833205 70833226 GTTCTTCATTGAATGCTTTCCC 59 NA Rattus norvegicus 81 Eps15 ENSRNOG00000010299 ENSRNOT00000064145 1 1 1 80 5 129000451 129000470 CAACCTCAATGAACATGCTG 58 129000511 129003142 GGACTACTTCTCACTGATGAC 58 NA Rattus norvegicus 81 Caln1 ENSRNOG00000000886 ENSRNOT00000001185 3 1 1 81 12 29308459 29326913 TTGAAGGAGTCCATTCGCA 59 29308396 29308414 ATAAAGGCCATGGCAAAGG 59 NA Rattus norvegicus 81 Pitx1 ENSRNOG00000011423 ENSRNOT00000015307 2 1 1 273 17 8880904 8880922 CACTCACTTCACAAGCCAG 59 8882997 8883015 GTTGTTGTAGGAGTAGCCG 58 NA DesignNoJunction Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598,ENSRNOT00000008359 3 2 2 80 6 33861367 33861385 ACTGTACTGCAGAGCAGAC 59 33861428 33861634 TGCCATACTGATCCTGTACC 59 NA Rattus norvegicus 81 LOC680624 ENSRNOG00000029763 ENSRNOT00000043227 2 1 1 116 11 12276132 12276727 GTGGTAGTTCGCAGTAGCT 60 12276807 12276825 CAGGTCCTTGTAGCCTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr529 ENSRNOG00000054730 ENSRNOT00000057508 2 1 1 60 3 74503008 74503027 TCTCTGTGCTGTTTCTCCTG 60 74502967 74502986 AGTATCATGCCTACGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 3 2 2 81 9 121712377 121712397 TGGTCTACGGGATAATAATGC 58 121710267 121712334 TCTTCTGGTCTGATCCCAG 58 NA Rattus norvegicus 81 Cmtm4 ENSRNOG00000011009 ENSRNOT00000014749 3 1 1 81 19 821563 823461 TGCTGCTGTGATATTTGGC 59 823506 823524 GCTGACTCTCCATTTCTGC 59 NA Rattus norvegicus 81 B2m ENSRNOG00000017123 ENSRNOT00000023017 2 1 1 80 3 114090357 114090376 AGACCGATGTATATGCTTGC 58 114090419 114090950 ATTACATGTCTCGGTCCCA 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 2 1 1 67 1 229349180 229349198 GCTTCATTCGATGCTCCTG 59 229349873 229351031 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000047759 ENSRNOT00000075350 3 1 1 62 1 121185934 121185953 CAGGCTGCTGGTTATATTCC 59 121185891 121185909 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000077143 3 1 2 81 20 4067038 4067057 CCATTCCTTCCACAAGATGG 59 4066687 4066995 CTGGAATCTCAGGTTCTTGC 59 NA Rattus norvegicus 81 Olr1614 ENSRNOG00000008739 ENSRNOT00000011549 3 1 1 60 15 27207929 27207948 CTTCACTCAATGCCTACTCC 58 27207971 27207989 TAGACATTCAGTTGTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 3 2 2 80 1 104136039 104139851 ATGGATCTTTCGTCTACTGGTC 60 104139890 104139910 CTATCTGGTTGAGGTAGGTCC 59 NA Rattus norvegicus 81 Exoc3l4 ENSRNOG00000010111 ENSRNOT00000013460 2 1 1 81 6 135877144 135877560 CAGCAAGACATTCAGCCAC 60 135877605 135877623 TGTCCATGAGTGGATGCAG 60 NA Rattus norvegicus 81 Zfp64 ENSRNOG00000012762 ENSRNOT00000017063 1 1 1 84 3 165739858 165739876 TCAGAAGAGACAGTGCCTG 59 165728315 165739811 GAGCTGCAACTGTGATAGTC 59 NA Rattus norvegicus 81 Dhx37 ENSRNOG00000022171 ENSRNOT00000030823 3 1 1 81 12 36600005 36600969 TGTCACATCGGGTTGTCTC 60 36601011 36601032 CCATCTGTCATGAACTTGATCC 59 NA Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 1 2 2 80 13 26988202 26988220 GCAAAGCATCTGACAGCTC 60 26988261 26988587 GCTCATTTGTAGATTCACCCTG 60 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000087106,ENSRNOT00000079526 1 2 3 81 4 163419650 163419669 TGGATTCTTTCGAAAGAGCA 58 163419283 163419609 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 Cerk ENSRNOG00000017022 ENSRNOT00000022882 3 1 1 80 7 127019979 127019998 CTTATCCGGAAATGCTCCAG 59 127018921 127019936 AGTGAAGCCAAACTGATCC 58 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047658 ENSRNOT00000042220 3 1 1 60 11 85042373 85042391 TTCTTGGGTTCTTGTTGCT 58 85042525 85042544 GACTGGGTCATCTGAATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Lats2 ENSRNOG00000056343 ENSRNOT00000087978 1 1 1 80 15 37951317 37952558 CAGGAAATGGCCAAAGCTG 60 37951255 37951274 GTAGTTCGACTCCTTCTGGT 59 NA Rattus norvegicus 81 Scgb2b2 ENSRNOG00000023367 ENSRNOT00000030687 2 1 1 82 1 89724362 89725019 AAGTGAGAAAGCATGCTTTCC 60 89725063 89725081 AAAGTTCATGCTGCAACCA 59 NA Rattus norvegicus 81 Olr276 ENSRNOG00000055310 ENSRNOT00000087918 1 1 1 60 1 172892216 172892236 TCATCCTCTTCACCATCATCC 59 172892257 172892276 GTACTGAGGTTCCCAGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mthfd2 ENSRNOG00000010833 ENSRNOT00000014603 3 1 1 80 4 115010232 115011422 GCTGAAGTGGGAATCAACAG 59 115010171 115010192 TGTCCTGATTGAATTCAACAGC 60 NA Rattus norvegicus 81 Prr14 ENSRNOG00000018518 ENSRNOT00000055002 2 1 1 80 1 198915582 198915602 GATTCAGCAACAAATACGGAG 58 198915651 198915921 TTCAAGGCACTGATTGGTC 58 NA Rattus norvegicus 81 Ppp1r14a ENSRNOG00000020676 ENSRNOT00000028070 3 1 1 86 1 87230810 87230829 CTGGAATTGGACAGTGAGGA 60 87231330 87232653 CTGGACGAAGTCCTCTGTG 60 NA Rattus norvegicus 81 Zfp251 ENSRNOG00000030308 ENSRNOT00000028184 3 1 1 112 7 117938520 117938538 TAAGCCAGAGCTGATCTCC 59 117912918 117938445 TGATCTCAGAATCTGTCCCG 59 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001,ENSRNOT00000085483 3 2 2 81 4 56815280 56815513 AGCTCATTACTGTACAGGTGG 60 56815556 56815574 TCTGCTGACCAAGAAAGCT 59 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 2 2 2 61 7 144267236 144269421 GATCAGGAGCACCTCTCAG 59 144267193 144267211 GTGGTCGCTTTAACTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952 2 1 2 81 16 24781218 24781350 GCTACTTCAAGATATACGTTCGC 60 24781159 24781179 TCACTGGACCTGTACTTACTG 59 NA Rattus norvegicus 81 Mir2964 ENSRNOG00000035452 ENSRNOT00000053575 2 1 1 60 3 8407436 8407454 CTCAACCACAGATGTCCAG 58 8407477 8407496 ACGCAATTCTTGTACGAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stat5a ENSRNOG00000019496 ENSRNOT00000026662 2 1 1 80 10 88767360 88769579 GAGAAGCCAACAATTGCAG 58 88769622 88769641 ACGTTTGGTTGATCTGAAGG 59 NA Rattus norvegicus 81 Cpt2 ENSRNOG00000012443 ENSRNOT00000016954 1 1 1 81 5 127514747 127514767 ACTTGAAGACACCATGAAGAG 58 127513149 127514704 CAACGCTTCTGTTCTCCTG 59 NA Rattus norvegicus 81 Cpt2 ENSRNOG00000012443 ENSRNOT00000016954 3 1 1 82 5 127514747 127514768 AACTTGAAGACACCATGAAGAG 59 127513149 127514704 CAACGCTTCTGTTCTCCTG 59 NA Rattus norvegicus 81 Mir20b ENSRNOG00000036558 ENSRNOT00000054662 3 1 1 60 X 140117562 140117581 AAAGTGCTCATAGTGCAGGT 60 140117521 140117540 TACCAGAAGTGCTCACACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Siglech ENSRNOG00000021499 ENSRNOT00000032254 2 1 1 83 1 114147258 114148125 TCTTCCTCAGCATGAGACC 59 114148171 114148190 ACTAATCCATGACAGTGGCT 59 NA Rattus norvegicus 81 Fstl3 ENSRNOG00000009311 ENSRNOT00000012578 3 1 1 103 7 12809182 12809200 AACATCAACACAGCCTGGT 60 12807659 12809116 TCGCAAGAATCTTTGCATGG 60 NA Rattus norvegicus 81 Smlr1 ENSRNOG00000047821 ENSRNOT00000071726 2 1 1 120 1 20856273 20856293 CGATCTTCTTACAGGAACTCC 58 20856374 20877360 TGTTCTTCAACTGCCATCAG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076540 2 1 5 61 8 39370496 39378905 TTCCAGCATCTCATGGGTG 60 39370453 39370474 ACTTGCCATGTTTAGAATGCTC 60 NA DesignRelaxed Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 2 2 2 80 15 33382929 33383506 CCTTACAAGAACCTTCCTAGAG 58 33382870 33382891 ATAGGCGATATTAGCAAAGACG 59 NA Rattus norvegicus 81 Vapb ENSRNOG00000005331 ENSRNOT00000007554 2 1 1 80 3 171864527 171864546 AAACCGGAAGACCTTATGGA 59 171864586 171866099 TTCTACATCATGTGGTTTAGCG 59 NA Rattus norvegicus 81 Olr907 ENSRNOG00000048775 ENSRNOT00000042179 1 1 1 60 7 5594295 5594313 AGACACTTGGTTCATGGAG 57 5594333 5594355 CGTTATAATGAGAGTCCGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnot1 ENSRNOG00000012271 ENSRNOT00000016563 2 1 1 80 19 9724013 9724032 AGTATTGTCAACACCTGGCT 59 9724071 9726642 GTTGTCCATATTCGATGTACTCC 59 NA Rattus norvegicus 81 Gnb1l ENSRNOG00000001891 ENSRNOT00000002596 1 1 1 80 11 86598282 86598301 GCAAGAGTTCCATCTTGGTC 59 86594234 86598239 GAATCTGAACCTCGTCGCT 60 NA Rattus norvegicus 81 AABR07065776.2 ENSRNOG00000047996 ENSRNOT00000045885 3 1 1 80 6 140834024 140834124 ACTAGCTACACGTGTCTACTC 59 140833964 140833983 AACTTGACTGAGGACCAAGG 60 NA Rattus norvegicus 81 Eif2s1 ENSRNOG00000009432 ENSRNOT00000013375 3 1 1 80 6 102064004 102064027 GGTCTTTGATGACAAGTACAAGAG 60 102064063 102067894 AAGATAGATGGGTCTGAGACTG 59 NA Rattus norvegicus 81 Mrpl35 ENSRNOG00000008546 ENSRNOT00000012021 2 1 1 80 4 99741316 99741335 GAGAAAGACAGTGAAGTCGG 58 99739990 99741274 TTATAGCCAGCCTTTCTCCT 58 NA Rattus norvegicus 81 Iffo1 ENSRNOG00000018533 ENSRNOT00000048379 3 1 1 80 4 157666858 157666880 TGATCAAAGATACTGAGTCCCTG 60 157666920 157673510 CCAGCTCCAGCTCTATCTG 59 NA Rattus norvegicus 81 Rn60_X_0750.3 ENSRNOG00000051231 ENSRNOT00000075856 3 1 1 61 X 74163484 74163506 CCAGGAATAACAATAGACTTCCC 59 74163526 74163545 CAAGATTCTGCTGAGGTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 1 2 2 80 7 122955907 122957473 CCAGCTCTGATCTCACTAGG 59 122955846 122955864 AAATGCGTTGTCACTGAGG 59 NA Rattus norvegicus 81 Pon1 ENSRNOG00000008902 ENSRNOT00000011823 1 1 1 80 4 30260768 30260786 AAAGTCCGAGTGGTAGCAG 59 30259269 30260727 AGCGATATAGACATACTTGCCA 59 NA Rattus norvegicus 81 Prss29 ENSRNOG00000039405 ENSRNOT00000060387 1 1 1 80 10 14681414 14681432 TCCAATCATGGCCAGAGAC 60 14681476 14681574 TGAGTCACCATAGCAGGAG 59 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704,ENSRNOT00000078453 2 2 2 80 5 173337675 173337765 TTTCCTCTATCGACAGGTGC 60 173337614 173337632 TTCACTTGTGTAGGTGCCA 59 NA Rattus norvegicus 81 Helz2 ENSRNOG00000013267 ENSRNOT00000017787 1 1 1 80 3 176732941 176732959 AGTGAGCAACAGGAGTCTG 59 176732799 176732899 TGGTGAAGGGTAATACTCCTG 59 NA Rattus norvegicus 81 Anxa7 ENSRNOG00000007136 ENSRNOT00000061686 3 1 1 80 15 4278910 4280877 GGAGTGAGATTGACCTCGT 59 4280921 4280939 CACTTGCAATCATCGTGCT 59 NA Rattus norvegicus 81 Anapc11 ENSRNOG00000036686 ENSRNOT00000054954 1 1 1 80 10 109775572 109782995 TGTCCAGACTGTAAGGTGC 59 109783038 109783057 GATGCAGTGCATATGGAAGC 60 NA Rattus norvegicus 81 Mir676 ENSRNOG00000061112 ENSRNOT00000090243 3 1 1 61 X 70207030 70207049 TGACTCTGCAACCTTAGGAC 60 70207073 70207091 ATAGCTCGACAAGCTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gfral ENSRNOG00000032063 ENSRNOT00000052341 2 1 1 80 8 83277122 83277142 CTTGACTGATACAGATGGCTG 59 83274445 83277080 ATCTTGCAGGAGTCACCTG 59 NA Rattus norvegicus 81 Fam43a ENSRNOG00000001728 ENSRNOT00000002355 1 1 1 60 11 73677706 73677724 CTTCAGACATGAAGGCCCA 60 73677664 73677682 CCAAAGCTAAGGTCACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txndc12 ENSRNOG00000008090 ENSRNOT00000010700 2 1 1 80 5 128473274 128473296 CCCTGAAATCATCAATGAGAGTG 60 128473334 128475139 TTCATCCCTTGAACAACTTGC 60 NA Rattus norvegicus 81 AC109901.1 ENSRNOG00000053208 ENSRNOT00000045807 1 1 1 80 11 85633277 85633418 ATCACTTAACAGGGTCATGGG 60 85633456 85633478 GTTTGACTGTGATTCCTAGAGAC 59 NA Rattus norvegicus 81 Kdm4d ENSRNOG00000024726 ENSRNOT00000033932 2 1 1 73 8 12993631 12993649 AAGGCGCAAATAAGTACGG 59 12970445 12970465 GAATCTCTTCAGGGATGTGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gcm1 ENSRNOG00000007932 ENSRNOT00000010583 2 1 1 80 8 85357587 85357605 CTGGACGACTTTGATCCTG 58 85357648 85363694 CTTCTTCACATTCTGAGGCA 58 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000028113,ENSRNOT00000086509,ENSRNOT00000079879,ENSRNOT00000078885 1 4 4 83 8 117880997 117887825 CTTCATAAGGGTGCTGTGAC 59 117880933 117880951 AATGTGCATCTCAGGGAGG 60 NA Rattus norvegicus 81 Serinc2 ENSRNOG00000012989 ENSRNOT00000017577 1 1 1 80 5 148472042 148474758 CACCTTCTTCATTAGCCTGAG 59 148471982 148472000 ATTTCTGCTGGACACTCCT 59 NA Rattus norvegicus 81 AC114343.2 ENSRNOG00000052100 ENSRNOT00000090835 2 1 1 60 15 28091636 28091655 ACAGCTATGTTCAGTTCCAC 58 28091595 28091614 TTCATGTCCTCTATGCTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704,ENSRNOT00000036232,ENSRNOT00000035576,ENSRNOT00000036180,ENSRNOT00000036168,ENSRNOT00000047964,ENSRNOT00000036283,ENSRNOT00000007429 2 8 8 80 1 226484714 226488197 CCTTTCTATTTGAAGGGTTTCCC 60 226488235 226488255 TGAAACGGTCATAATCCAGGA 59 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 1 2 2 80 10 104555270 104557234 CAGATGACACTGAGCACCT 59 104557277 104557296 CAGTCATCCTATGCAGGGAG 60 NA Rattus norvegicus 81 Foxc1 ENSRNOG00000017800 ENSRNOT00000023957 3 1 1 60 17 33950565 33950585 TCTATCGGGACAATAAGCAGG 60 33950525 33950544 TCATTAAGCGAGAGGTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102555727 ENSRNOG00000029686 ENSRNOT00000052316 3 1 1 84 4 9810501 9810523 ATCTTTGCATCAAAGACGTG 57 9810570 9810588 GCCTCATACAGTGGAATGG 58 NA Rattus norvegicus 81 Fam219a ENSRNOG00000039559 ENSRNOT00000060642 1 1 1 81 5 57900742 57900763 CTAATAAAGGCTACTCTTCGCT 58 57900042 57900700 AAATCGTCATCGCTGTCTG 58 NA Rattus norvegicus 81 Olr951 ENSRNOG00000047710 ENSRNOT00000051670 2 1 1 60 7 6645015 6645034 TGCAGACCATTACATTACCC 58 6645056 6645075 TGAGGACAAGTTGATGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912356 ENSRNOG00000059274 ENSRNOT00000058358 3 1 1 60 5 107388156 107388174 GCTCTGTGCTTTCCTAGTG 58 107388114 107388132 TCCTAGACAGCAGGTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011,ENSRNOT00000080404 2 2 2 80 10 17512963 17513484 AAGGTCAAGCAGTTCTCCC 60 17513528 17513546 CTGGTTCTCGTGTTTCTGC 59 NA Rattus norvegicus 81 Dr1 ENSRNOG00000000070 ENSRNOT00000000080 1 1 1 82 14 1631591 1631609 TATCTTCCGAAGCCAACGA 59 1625631 1631547 ACTTTCTAGTGCTTGGATGAC 58 NA Rattus norvegicus 81 Phkg1 ENSRNOG00000000920 ENSRNOT00000001222 1 1 1 80 12 30462519 30462540 ATGATCATGGATGGCAAATACC 59 30462579 30463518 GCGAGATACCAAGTCTTTCAC 59 NA Rattus norvegicus 81 LOC100912204 ENSRNOG00000048626 ENSRNOT00000044928 1 1 1 60 11 43476413 43476435 TCTATCTCATCACTATAGCAGGG 59 43476454 43476473 TGAGAGTCACTCCAGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc9 ENSRNOG00000004581 ENSRNOT00000006484 3 1 1 80 X 135013298 135014092 AAACTCCTGGAACTGTTCTG 58 135013237 135013256 AAGTGTGAAATCCAGTCAGC 59 NA Rattus norvegicus 81 Olr1073 ENSRNOG00000031688 ENSRNOT00000042747 2 1 1 60 7 13378736 13378757 AAGCATTATGACACCTCATCTC 58 13378778 13378796 GACACTTGCGATCCAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174,ENSRNOT00000083194 1 2 2 80 8 22300236 22300254 TTCTGCTCTACCTGGATCC 58 22300298 22300394 AGTGAAAGGACTCCAGTGG 59 NA Rattus norvegicus 81 LOC100911597 ENSRNOG00000049236 ENSRNOT00000037611 1 1 1 80 7 119013504 119013522 CTGAACGACAACATTGCCA 59 119011750 119013461 GATTCGATCCACATCCTTCC 58 NA Rattus norvegicus 81 Kctd7 ENSRNOG00000042384 ENSRNOT00000001198 2 1 1 81 12 30029889 30029907 CGGCATTACATCCCTACAG 58 30025464 30029845 GGAAATTCAGCACATCTCCA 58 NA Rattus norvegicus 81 AABR07049728.1 ENSRNOG00000033231 ENSRNOT00000044921 2 1 1 84 5 134444684 134444702 CACCAATGTCAGATCTGCT 58 134444750 134444967 TTCTTTCTTTCGGGTGGTG 58 NA Rattus norvegicus 81 Hivep2 ENSRNOG00000011015 ENSRNOT00000015131 3 1 1 80 1 8326312 8326331 ACCATAACCCACCATTACCA 59 8326370 8331430 ATCCTCTTCTTAGATTAGGAGGC 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 3 2 2 80 20 25826623 25826644 GAGTAATACCCTGAATACTGCC 58 25817614 25826583 ATAATAGCTTTGCGGAGCTG 59 NA Rattus norvegicus 81 Gnmt ENSRNOG00000016349 ENSRNOT00000022307 2 1 1 80 9 16566989 16567008 AGATGCTGAAATACGCACTG 59 16567051 16567625 TGGCTTCTTCAATGACCCA 59 NA Rattus norvegicus 81 Ran ENSRNOG00000000938 ENSRNOT00000001247 2 1 1 80 12 31323155 31323259 GAGAAGAAGTATGTAGCCACC 58 31323095 31323113 GTTGAACTTGATGGGTCCT 57 NA Rattus norvegicus 81 Evpl ENSRNOG00000009343 ENSRNOT00000012373 1 1 1 80 10 105113417 105113437 TATGAGAAGATAGTGCTGCCG 60 105112694 105113377 GATCAGCTTCTGTTTCTGCTC 59 NA Rattus norvegicus 81 AC229945.1 ENSRNOG00000056748 ENSRNOT00000074379 3 1 1 80 5 79894286 79894309 AGATTTCACCTCACATGCGA 60 79894225 79894245 TTCCTCTTTCTCCACATCCTC 59 NA Rattus norvegicus 81 Akap5 ENSRNOG00000006410 ENSRNOT00000008416 3 1 1 120 6 99356681 99356699 GAATCTGATGCACTGAGCC 59 99356781 99359502 TATTTAAAGCCCAACCTGGAG 58 NA InUTR Rattus norvegicus 81 Hao2 ENSRNOG00000019470 ENSRNOT00000091845,ENSRNOT00000046942,ENSRNOT00000091444 3 3 3 88 2 200798229 200798247 AGCAATGAAGCACAACGTC 60 200798297 200806602 TCAGAGCATCAATTGAAGCAG 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000027771 1 1 2 83 18 25956633 25956651 CTGAGATTCTCCGAGGCTG 60 25956695 25960921 ATCCACAAAGTAGGATGTAGGT 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000027771 2 1 2 86 18 25956633 25956651 CTGAGATTCTCCGAGGCTG 60 25956696 25960924 CAAATCCACAAAGTAGGATGTAGG 60 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 2 2 2 80 4 57805012 57805034 GTTTATCAGAGTGCTATCAACCC 59 57803191 57804973 ATTTCTGCCCTTTGGAAGAC 59 NA Rattus norvegicus 81 Olr109 ENSRNOG00000015919 ENSRNOT00000021304 3 1 1 80 1 168643817 168644020 ACTATTCAACCACCTACCCT 58 168643756 168643776 ACATAGTGGGATACAGAACCA 58 NA Rattus norvegicus 81 Lmntd2 ENSRNOG00000017050 ENSRNOT00000022954 2 1 1 80 1 214198487 214198619 CCAGTTGAATCCATTTGGC 57 214198425 214198443 GACTGGTTGATAATGCGGA 58 NA Rattus norvegicus 81 Zswim7 ENSRNOG00000002970 ENSRNOT00000003974 3 1 1 81 10 48593301 48596020 CTCTTATCGCTGAAGTTTGTG 57 48593240 48593261 AGATTAAAGTGACTGACTCTCG 58 NA Rattus norvegicus 81 RGD1564102 ENSRNOG00000047758 ENSRNOT00000042604 2 1 1 93 14 525009 525755 GAGTCAAGTCCTAGGGTGC 60 525810 525830 GCAGGAGAAGGAATTCAACTC 59 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 2 4 4 80 20 4586977 4586995 CATGCTGTCAACTACCACG 59 4587039 4587153 CAGGAACAACAGAACGCAG 60 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000074082 2 1 2 145 10 104953150 104953169 TTCACAGTGACCTTGGAGAG 59 104953277 104955086 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000010906,ENSRNOT00000077770 2 2 2 80 6 135696467 135701445 ACACTGCAGAAACATGAAGAC 59 135701487 135701505 CAGAAGAGTCTGAACGCTG 58 NA Rattus norvegicus 81 Taf1b ENSRNOG00000061415 ENSRNOT00000086798 3 1 1 80 6 43710777 43711485 AAGCTGGAATGGTCTTACTC 57 43713391 43713409 TCTGAAATCAAACTGCGGA 57 NA Rattus norvegicus 81 Hic2 ENSRNOG00000051458 ENSRNOT00000079595 1 1 1 91 11 87994883 88016685 CACATGAGGTAACCAGGCT 59 87994810 87994828 GAAACCATGTGAGCAGCAG 60 NA InUTR Rattus norvegicus 81 LOC100910837 ENSRNOG00000050235 ENSRNOT00000071834 3 1 1 60 10 44375949 44375969 TTCCTGTCAGACACTAAGACC 59 44375909 44375930 GAAACACAAATGCTTGGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 2 1 2 170 9 15626099 15628717 GGACAACACCATTGACTTCC 59 15624545 15625971 CAGTTAATTGTTCTACTGACCTCC 59 NA Rattus norvegicus 81 Olr1445 ENSRNOG00000046040 ENSRNOT00000073040 3 1 1 60 10 44568915 44568933 ACCTTTGTGTTTCTGACCC 58 44568957 44568975 CATAGGACATGAAGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000082774 3 1 2 82 8 133210537 133213191 GAAACTCTGGCTCTTGCAG 59 133213234 133213255 GGGTGCTGACATACTATAATCG 59 NA InUTR Rattus norvegicus 81 Ear1 ENSRNOG00000025515 ENSRNOT00000021645 1 1 1 60 15 28260535 28260553 AATGTAATGCTGCCATGCT 58 28260571 28260595 GTATTTATGCCCTTACATCTTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kntc1 ENSRNOG00000033658 ENSRNOT00000063990 2 1 1 80 12 38261787 38261806 CTTCTCTTCCCATAGAGCAG 57 38259012 38261745 CAGAGTCTTCACATAGGCAG 58 NA Rattus norvegicus 81 Fam46c ENSRNOG00000015222 ENSRNOT00000020401 1 1 1 82 2 202816335 202816353 GTCACCTCTTCTTCCAACG 58 202799929 202799947 GGAGTCCTTGGTACTGCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ly49s2 ENSRNOG00000053772 ENSRNOT00000090110 2 1 1 80 4 164399249 164399267 GTGGATGTACCCAGACCTG 60 164396882 164399209 GATGAAGGAACATCAGTTCATCC 60 NA Rattus norvegicus 81 Cc2d1b ENSRNOG00000008634 ENSRNOT00000011670 3 1 1 80 5 128220640 128220971 TGCAGACCTTCTGACAGAG 59 128221013 128221033 CTTGTTTCCTCACTGTCATCC 59 NA Rattus norvegicus 81 Dusp7 ENSRNOG00000010789 ENSRNOT00000014770 3 1 1 90 8 115071379 115071398 TTCACCTACAAGCAAATCCC 58 115071451 115073966 GGGCTTCATCAATGAAGCT 58 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000021946 2 1 3 85 17 9831363 9831509 CTGGAGAAACGGAGGAGAG 59 9831557 9831576 TATCGGGTATGGTCAACTCC 59 NA Rattus norvegicus 81 AC126957.1 ENSRNOG00000042397 ENSRNOT00000064835 3 1 1 80 1 230704198 230704224 CTCCCTCTCCTTCTGTAATAACC 60 230704264 230704282 GTGTTACTACAGGCCAGCT 59 NA Rattus norvegicus 81 Cenpu ENSRNOG00000022261 ENSRNOT00000041596 2 1 1 80 16 48906781 48906799 TCAGAAGAAAGTCAGGCCA 59 48905832 48906739 ATGCTTTCAGAAGCATCTGAG 59 NA Rattus norvegicus 81 Dlx5 ENSRNOG00000010905 ENSRNOT00000014946 1 1 1 90 4 32389642 32391482 CCAGCCAGAGAAAGAAGTG 58 32389570 32389590 GCTGGAATAAATAGTCCTGGG 58 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 2 2 2 83 1 98521276 98521377 TGTTGGATGGGTCTCAAGG 59 98521211 98521231 AGATACACAAACCCTCCTGTG 60 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404,ENSRNOT00000028854 3 2 2 80 3 123602549 123604979 AAAGAGCAGATCTCCAAGC 58 123602487 123602506 CTTCTCCAATTCAAGCAGGA 58 NA Rattus norvegicus 81 RGD1560883 ENSRNOG00000045639 ENSRNOT00000071535 2 1 1 80 2 4340259 4341616 CAGCTAAGAAACCCATATTCCT 58 4341657 4341675 AGTCCGTAAGCTGAAACTG 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000086185,ENSRNOT00000077999 2 2 3 80 8 78068978 78068997 AAGGAAATGGTGGTGTATGG 58 78065491 78068935 CAATGTAGCCCTCACATCC 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000085843,ENSRNOT00000086185 1 2 3 80 8 77988180 77990033 AAGACCAATGTGTTACCCAC 58 77988119 77988137 CTCTTCTGAGGAAGCAGGA 58 NA Rattus norvegicus 81 Rbmxl1 ENSRNOG00000012138 ENSRNOT00000016184 3 1 1 60 19 33084275 33084295 ATTACAGTCATTCCAGTTCCC 58 33084315 33084335 CCATCTCTATCACCATAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000021158,ENSRNOT00000081621 3 2 2 80 9 16049763 16051234 AAAGAAGATACAGCACTTCCTC 58 16051274 16051293 ACACTGCAAGATGTTAACCA 58 NA Rattus norvegicus 81 Sdc2 ENSRNOG00000004936 ENSRNOT00000007255 2 1 1 80 7 71669610 71669633 TGAGGAAGCTTCAGGATTATATCC 60 71669669 71675868 CCTTTGTCTTCATAAGCTCCTG 59 NA Rattus norvegicus 81 Nol9 ENSRNOG00000010109 ENSRNOT00000013535 1 1 1 80 5 169228164 169228183 TATGAAAGGCTACACTCGGG 59 169228226 169229211 CCTCTGCAGATACCAAAGC 58 NA Rattus norvegicus 81 Krtap27-1 ENSRNOG00000049035 ENSRNOT00000071257 2 1 1 60 11 28629501 28629521 ATCTTCTAGCACTTATGAGCC 57 28629461 28629481 CTTACTAGGCAATTGTGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbp1 ENSRNOG00000017597 ENSRNOT00000023685 3 1 1 80 17 400180 400200 TAATGAGGGCTATGCTAAGGA 58 398613 400138 AGTGAATTATCCGGAGGGA 58 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911 2 1 3 86 X 71166679 71166697 GGAAGCTGTGCTTATCCCT 60 71166421 71166629 ATTCGAGGCATTCGTTCCA 60 NA Rattus norvegicus 81 Olr1063 ENSRNOG00000046346 ENSRNOT00000047647 2 1 1 60 7 9263108 9263128 ATCATTCTGTTGACTCTGCTG 59 9263147 9263168 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 1 3 3 87 7 120659554 120659572 AGAAGTACGAGCGGATCAG 59 120659003 120659506 AGGTAAGTTGAGAACTCAGAGG 59 NA Rattus norvegicus 81 Pld3 ENSRNOG00000018390 ENSRNOT00000057177 3 1 1 81 1 84339941 84340785 ATCCAGGTGAAACTGTTTGTG 59 84339880 84339899 TGTACTTGTTGTGGTTGACG 59 NA Rattus norvegicus 81 Rasl10b ENSRNOG00000010302 ENSRNOT00000013687 1 1 1 144 10 70629262 70629280 GTCCATCTCCAGAGTCCTG 59 70629387 70630117 CCACCTAGACACGTTTAAGC 59 NA InUTR Rattus norvegicus 81 Cenpv ENSRNOG00000003086 ENSRNOT00000004127 3 1 1 80 10 48855797 48858077 TTTGACTGCAACTGTAGCA 58 48855735 48855753 CTTCAGGAGTTTGAAGCGA 58 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 1 2 2 80 19 61338473 61393962 GACTGCAAGTATGACTATGTGG 59 61394002 61394021 GATCTTCCCACAGAACTTCC 58 NA Rattus norvegicus 81 Rps23 ENSRNOG00000016580 ENSRNOT00000022348 1 1 1 80 2 19823267 19823688 GGCAAGATGGGTAAGTGTC 58 19823730 19823750 TTTATCATGCCACTTCTGGTC 58 NA InUTR Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000081305 2 1 2 61 2 95078045 95173486 ATGGCGAGAAGTACCAGAG 59 95173511 95173529 CGTCAGTTCAAGATCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmsb10 ENSRNOG00000036921 ENSRNOT00000055447 2 1 1 71 7 122433134 122433152 CTTCGATAAGGCCAAGCTG 59 122433187 122433205 TCAATGGTCTCTTTGGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgcr14 ENSRNOG00000000283 ENSRNOT00000000308 1 1 1 81 11 87229264 87229881 CTGCTCCTGGTATGAATGAG 58 87229924 87229943 CTCTCAGATCCTTCAACTCG 58 NA Rattus norvegicus 81 Sh2d6 ENSRNOG00000013605 ENSRNOT00000018251 1 1 1 80 4 100377671 100378366 CCGTCTTATTCTCAAGAAACCA 59 100377276 100377294 AGAGACCTAGTCAAGGCTG 58 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 3 2 2 111 19 10130852 10130870 TACTGCCTCAACCAGAACC 59 10129854 10130574 GATAGTTGATGCGACTGTAGTG 59 NA Rattus norvegicus 81 Gpr50 ENSRNOG00000011335 ENSRNOT00000015147 1 1 1 80 17 36771804 36771822 CGTCGTAGACCTGATTGGA 59 36771864 36774459 AAGATGTTGCCAGAATTTCGG 60 NA Rattus norvegicus 81 Nup205 ENSRNOG00000010852 ENSRNOT00000014832 2 1 1 80 4 62722535 62722556 TGAGTATACAGATGGGTAACGA 58 62722595 62722797 ATAGTTCACCAATCAGGAGCA 59 NA Rattus norvegicus 81 Coq7 ENSRNOG00000017012 ENSRNOT00000022988 2 1 1 80 1 188178481 188178501 GCTCATCACTACAACAACCAG 59 188176873 188178439 CTTAATGACCTGCAGCAGC 59 NA Rattus norvegicus 81 Blvrb ENSRNOG00000024410 ENSRNOT00000031026 2 1 1 80 1 84268654 84268672 CGATGTGGACAAGACTGTG 59 84268715 84268876 ACTGTAGTAGGACTGAGGTC 58 NA Rattus norvegicus 81 Vom2r15 ENSRNOG00000029458 ENSRNOT00000042466 3 1 1 81 1 62668493 62676247 GAAGGTTCACAGATGCTGAC 59 62668431 62668450 CTGGCATTCCATTCTTCCTG 59 NA Rattus norvegicus 81 Uchl1 ENSRNOG00000002343 ENSRNOT00000003248 1 1 1 80 14 43137886 43140370 AGCTGGAATTTGAGGATGGA 59 43137825 43137843 ACTTGGCTCTGTCTTCAGG 59 NA Rattus norvegicus 81 Aire ENSRNOG00000001213 ENSRNOT00000001611 2 1 1 80 20 11369492 11369512 ATTTGAAGAACAAGACCCGAG 59 11369554 11369765 TCTGCTCATCTCTACCCTG 58 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357,ENSRNOT00000055975 2 2 2 80 3 118608410 118608429 CAACACATTGCTGACTACCA 59 118597456 118608367 CAAAGCTATCTGGACGCTG 59 NA Rattus norvegicus 81 LOC100360499 ENSRNOG00000039562 ENSRNOT00000060645 3 1 1 60 11 47090351 47090370 AGTTCTGTCTGCAGAATGCT 60 47090390 47090411 TTTGTACTTGAAGACACTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk20 ENSRNOG00000017991 ENSRNOT00000024466 2 1 1 80 17 1936848 1939165 CGAGGACAGTCAATATGTGG 58 1939208 1939226 AGCATAAACTCGAAAGCCA 58 NA Rattus norvegicus 81 Wdr33 ENSRNOG00000011382 ENSRNOT00000017075 1 1 1 80 18 24665781 24665799 GGGATGATCTGGAGTTTGG 58 24665842 24669749 CCAGAATTTGCTGGTATGGT 58 NA Rattus norvegicus 81 Pde6b ENSRNOG00000000065 ENSRNOT00000000077 1 1 1 80 14 2337144 2337447 ATGAAGTCCTTATGGAGTCTCTG 60 2337086 2337107 GCTTGTTCATCTTGTCATAGGT 59 NA Rattus norvegicus 81 Chrna10 ENSRNOG00000020293 ENSRNOT00000027507 2 1 1 80 1 167209742 167210113 CTCAGATCATTGATATGGATGAACG 60 167209686 167209704 GGTAGGCATCTGTCCACTC 60 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000087971,ENSRNOT00000040204 1 2 2 80 9 15640554 15640578 CAAGGCTGTATTAGACAGTTATGAG 60 15639804 15640521 GGCTCGTGTACTTTAATAGAAAGG 60 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 2 2 2 81 2 12102690 12104239 GTTTAGCTCTGAGAGGTGAG 58 12104281 12104301 TCTTGCTTCTGTTCTTCAGAG 58 NA Rattus norvegicus 81 Mir181c ENSRNOG00000035569 ENSRNOT00000053692 1 1 1 66 19 25290297 25290315 GAACTTGCCAAGGGTTTGG 60 25290249 25290267 GATGGTTTGTCTGAGCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499715 ENSRNOG00000033088 ENSRNOT00000043369 2 1 1 80 2 242824502 242825598 TTCACAATGTCAAGCTATGCTC 59 242824443 242824464 TGTTCTTTAAGGTGAGATCCGA 59 NA Rattus norvegicus 81 Mib2 ENSRNOG00000017564 ENSRNOT00000023696 2 1 1 80 5 173084885 173084903 CATCGATGTCACTGCTACC 58 173084700 173084841 CTAACTGCTAGCACATGGC 59 NA Rattus norvegicus 81 Kif20a ENSRNOG00000024428 ENSRNOT00000033784 1 1 1 80 18 27428504 27428523 GCCATCAGCATAAGAGACAG 59 27428563 27428679 GAATCCAGTTGAGGTCTTTCAC 59 NA Rattus norvegicus 81 Klhl11 ENSRNOG00000016921 ENSRNOT00000022695 1 1 1 83 10 88388703 88388721 TCGAGTACATGTACACCGG 59 88380521 88388659 TTAATAAGAATCTGTCCGCCAG 58 NA Rattus norvegicus 81 Klhl11 ENSRNOG00000016921 ENSRNOT00000022695 2 1 1 84 10 88388704 88388724 TTATCGAGTACATGTACACCG 58 88380523 88388659 AATAAGAATCTGTCCGCCAG 58 NA Rattus norvegicus 81 LOC102555083 ENSRNOG00000050661 ENSRNOT00000074262 2 1 1 81 7 117975594 117978077 GAAGTGATCACTCAGAATGCA 59 117975533 117975552 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Atp10a ENSRNOG00000056228 ENSRNOT00000080907 1 1 1 80 1 116101755 116101775 CAGATGAACTGTGATGTCCTC 59 116101816 116102924 CCACAATCCATGTCCAACTG 59 NA Rattus norvegicus 81 Zbtb3 ENSRNOG00000019461 ENSRNOT00000026321 3 1 1 88 1 224998304 224998613 GTTGGAGGACTCACTGGAG 59 224998664 224998683 TGACTGTGTTCTGGGAACTC 60 NA InUTR Rattus norvegicus 81 Evi5 ENSRNOG00000002039 ENSRNOT00000061630 2 1 1 80 14 3011602 3011623 TTAACAGGTCTGACTCTAAGCA 59 3011664 3034581 TTAGGCATCTGAGCTCGTG 60 NA Rattus norvegicus 81 AABR07009572.1 ENSRNOG00000013038 ENSRNOT00000049719 2 1 1 60 2 103751126 103751146 GCTAAGAATTGGGTGAAGGAG 59 103751166 103751186 CTAGTGCAATGACGATGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr5 ENSRNOG00000012475 ENSRNOT00000016679 2 1 1 80 7 125588668 125595085 CTGGAACAGTATCCACAACG 59 125595128 125595146 TCGTTGAGGATGAAGAGCT 58 NA Rattus norvegicus 81 AABR07006458.1 ENSRNOG00000046420 ENSRNOT00000071578 2 1 1 80 1 235394866 235394886 ATTCAGGGAGTACACAGAGTC 59 235394019 235394827 GGTGTTAAGAGAACTGGAATGC 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 1 3 3 80 X 71184405 71184423 CAACCGCTACAGCTTTGTC 60 71184464 71184658 GCGATGTCATTTACCCTATCAG 59 NA Rattus norvegicus 81 Klhl17 ENSRNOG00000020302 ENSRNOT00000027547 3 1 1 81 5 173657552 173657570 GATGTGTATCGTGCAGTCC 58 173657269 173657507 CACACTTCATCAGCCTTGG 59 NA Rattus norvegicus 81 Gxylt2 ENSRNOG00000005621 ENSRNOT00000007419 1 1 1 80 4 133244105 133247331 TACCCAGTTCAAGAACAGC 57 133247372 133247393 TTCTTATACTTCTGGTACAGCG 58 NA Rattus norvegicus 81 Klc4 ENSRNOG00000018168 ENSRNOT00000087413,ENSRNOT00000031625 1 2 2 80 9 16655691 16655710 TAGCTATCTATGAGCGCCAG 59 16655753 16656088 TTAGGTAGCAGGAAGCCAG 59 NA Rattus norvegicus 81 Terf1 ENSRNOG00000007291 ENSRNOT00000049741 1 1 1 80 5 2869609 2870181 CAACTTTCCTAATGAAGGCAG 57 2869549 2869567 CCTTTGCTTTATCCTCCGA 57 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898,ENSRNOT00000017573 1 3 3 80 18 25197961 25198388 AGATAGCAGAGAACAATGACCT 59 25198429 25198447 AGGTATCCATGGTCAGCAG 59 NA Rattus norvegicus 81 Adm ENSRNOG00000027030 ENSRNOT00000036718 2 1 1 86 1 175445713 175445732 GATGTTATTGGGTTCGCTCG 60 175445778 175445957 CACTTATTCCACTTCTTTCGGA 59 NA Rattus norvegicus 81 Senp3 ENSRNOG00000013746 ENSRNOT00000018670 2 1 1 80 10 56278117 56278530 GCCTTTGTGTTACAGTACTGC 60 56278057 56278075 ACGGAGTTTGGGCATATCC 60 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724,ENSRNOT00000078117 3 2 2 80 8 13235225 13238740 CCAGTACAAATTGTCCCTGTG 59 13235165 13235183 ACGTCAGCATTGAACAGGA 60 NA Rattus norvegicus 81 Erp44 ENSRNOG00000005841 ENSRNOT00000007711 1 1 1 82 5 63970523 63970542 CAGACTACATCAGGCAACAG 58 63969313 63970480 CTTACTGCGATCAAGATTGGT 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000091832 2 1 18 81 1 43508704 43508723 GAGTCCGTCAGAACACTAGG 60 43508766 43509786 CCTCATAACTCTGCTCCCTG 60 NA Rattus norvegicus 81 Mapkapk3 ENSRNOG00000014832 ENSRNOT00000020065 1 1 1 80 8 116014560 116014578 TGCTCCTGAAGACAGATCC 59 116014246 116014518 CCTCCATCGATTGATTGATCC 59 NA Rattus norvegicus 81 Csnka2ip ENSRNOG00000021791 ENSRNOT00000037345 2 1 1 60 11 1437258 1437276 GGTATTCAGTCCCAAACCC 58 1437216 1437235 AGGAGCAAGAGGAAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 2 3 3 80 19 10430953 10430971 TGCAGAACACCAAAGTCAC 59 10430526 10430909 GAGTCACGTTCTTTGGCTG 59 NA Rattus norvegicus 81 Alox12b ENSRNOG00000022210 ENSRNOT00000039535 3 1 1 80 10 55749759 55749777 CCAACTATGTGGACATCCC 58 55749820 55749933 TATAACCATTCCACTCAGGC 57 NA Rattus norvegicus 81 LOC500227 ENSRNOG00000009917 ENSRNOT00000013312 3 1 1 90 4 114859155 114859292 TTCCACAACGAAGAACCTG 58 114859346 114859364 CTGAAGATTGTGTCGGCTC 59 NA Rattus norvegicus 81 Prkacb ENSRNOG00000004978 ENSRNOT00000068739 2 1 1 80 2 252605438 252610734 TTTACCAGAGAAAGGTTGAGG 58 252605378 252605398 CTTCATAGTCATCGAAGTTGC 57 NA Rattus norvegicus 81 Olr1372 ENSRNOG00000047727 ENSRNOT00000041612 3 1 1 60 10 12643727 12643745 TGCTCCTGAAACTTTCCTG 58 12643685 12643706 CCCTCTGTAAGAATCATCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 ST7 ENSRNOG00000056243 ENSRNOT00000080880 2 1 1 80 4 45237527 45240201 AGCTACTTCCCTCTTTCCA 58 45240245 45240263 ACAATCCAGCAGTGAAGAG 58 NA Rattus norvegicus 81 Tmem184b ENSRNOG00000022802 ENSRNOT00000031117,ENSRNOT00000091317 3 2 2 80 7 120599622 120601915 GGTTCTGTAAACAGGCTACC 58 120599561 120599581 CAAAGGCCTGGAGTATAACAG 59 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 1 2 2 80 5 165305845 165305864 GATTCCTCATCACCTTCCCT 59 165305907 165307442 AGCGTTGAAGAGATCCCTG 60 NA Rattus norvegicus 81 Irf2bp2 ENSRNOG00000049900 ENSRNOT00000075292 1 1 1 87 19 59500580 59501169 TAAAGCAGTTGCAAGGACAG 59 59500512 59500532 TGCCTCTCCATTGATCTTAGG 59 NA Rattus norvegicus 81 Vegfc ENSRNOG00000011416 ENSRNOT00000015529 1 1 1 80 16 40440708 40447660 AACATGCAGCTGTTACAGAC 59 40440647 40440669 CACACCTCTTCACTAAATGACAG 60 NA Rattus norvegicus 81 Tmem208 ENSRNOG00000015974 ENSRNOT00000021723 1 1 1 81 19 37282735 37282758 GGGAAGAAGCAGATATTTGAAGAG 60 37282798 37283815 AGTAGATGGCATTGGCTCC 60 NA Rattus norvegicus 81 Plac9 ENSRNOG00000011263 ENSRNOT00000014964 2 1 1 82 16 3862583 3862601 AAGATCTAGCTTGGAGCCC 59 3862647 3865019 CTTCTCCACCGTCTCTTCC 60 NA Rattus norvegicus 81 Gpr19 ENSRNOG00000007126 ENSRNOT00000009341 3 1 1 99 4 168656611 168656630 TTATGGCATCCTCCAAAGTC 58 168641316 168656551 TTCCTCTTAGTTCTTCATGGG 57 NA InUTR Rattus norvegicus 81 Mpzl2 ENSRNOG00000016085 ENSRNOT00000021693 2 1 1 113 8 49347025 49347043 AGGGCGGATAAATCTGAGG 59 49349441 49350891 AATCCTCAGCTTCCCACAG 59 NA InUTR Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299,ENSRNOT00000001301 2 3 3 80 12 36734561 36736093 CCTATGTCTACAGGGAGTTCAG 60 36736131 36736152 TTCGGTTCTCTATGTAGGACAC 59 NA Rattus norvegicus 81 Susd5 ENSRNOG00000026951 ENSRNOT00000028675 2 1 1 83 8 122350838 122367093 AGCCTGTGGGAAAGATGAG 59 122367140 122367158 AGTTCCCTGAATGACACGG 60 NA Rattus norvegicus 81 RGD1308106 ENSRNOG00000025061 ENSRNOT00000034477 1 1 2 86 1 222620662 222620746 TAGTAAGGAGTCAGGCCAG 58 222620594 222620612 AAGAGGACCACGATCTCTG 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695,ENSRNOT00000084765 2 2 2 80 11 7356372 7358718 CAAAGACCTTGGGTACAACTG 59 7358760 7358778 GTGACTTGGTACCCAAAGC 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 2 2 2 80 19 10341169 10341414 CACAGGAGATATCAAGACATCG 59 10341110 10341130 ACAATATTCAGAAGGTCCACG 58 NA Rattus norvegicus 81 Sec61b ENSRNOG00000006345 ENSRNOT00000008329 3 1 1 61 5 63197412 63197433 GCGATTCTACACAGAAGATTCC 59 63200283 63200301 TCATCACCAGTACTGGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 1 3 3 80 1 214154472 214154490 ATGAGGCTGGTATCCACAC 59 214154335 214154430 CACAGTTCTCCAGTTTGAGTG 59 NA Rattus norvegicus 81 Hbegf ENSRNOG00000018646 ENSRNOT00000025157 1 1 1 97 18 29332323 29332342 CATATGACCACACTACCGTC 58 29331539 29332265 CCTATGGTACCTGAACATGAG 58 NA Rattus norvegicus 81 Hbegf ENSRNOG00000018646 ENSRNOT00000025157 2 1 1 98 18 29332324 29332343 ACATATGACCACACTACCGT 59 29331539 29332265 CCTATGGTACCTGAACATGAG 58 NA Rattus norvegicus 81 Etf1 ENSRNOG00000019450 ENSRNOT00000026398 1 1 1 80 18 27704170 27704450 AAAGAAACACGGCAGAGGA 60 27704108 27704128 TTCCGAACATAGTTATGTCGC 59 NA Rattus norvegicus 81 Ccdc163 ENSRNOG00000022953 ENSRNOT00000056967 3 1 1 80 5 135563670 135563793 AGACTCAGACTCAGGTGAC 58 135563837 135563855 TCTTGAACATCTGCTGCTC 58 NA Rattus norvegicus 81 Mak ENSRNOG00000015101 ENSRNOT00000020672 2 1 1 80 17 21547976 21552730 CCATACCAACGAATCCAGTC 59 21552772 21552791 CTCCAGACTTGAAGACTGTC 58 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165310576 165310596 GAATGTAAACAGACCTGCCAG 59 165307513 165310534 TTGCTGAAGGAACTTCCGT 60 NA Rattus norvegicus 81 Ptgs2 ENSRNOG00000002525 ENSRNOT00000003567 3 1 1 80 13 67353089 67353109 CAACCTCTCCTACTACACCAG 59 67353148 67353716 TCCTTATTTCCTTTCACACCCA 60 NA Rattus norvegicus 81 Susd3 ENSRNOG00000016525 ENSRNOT00000032997 2 1 1 61 17 15823139 15823158 TGTACAGAAGAGTGAGCAGC 60 15824508 15824526 CTCTCAGCTGGTACCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Mmp28 ENSRNOG00000047940 ENSRNOT00000013836 2 1 1 80 10 70662083 70662403 ATGCCATCACTGTAGATGGG 60 70662022 70662040 CATTGCCATCAGCTGTGAC 60 NA Rattus norvegicus 81 Pdc ENSRNOG00000002517 ENSRNOT00000003405 3 1 1 80 13 67555505 67555525 GATCCTCAGACAAATGTCCTC 58 67555566 67557633 TGAATGCTCATCTTTCTGCT 58 NA Rattus norvegicus 81 Rn60_1_0436.2 ENSRNOG00000060991 ENSRNOT00000078186 1 1 1 60 1 43533235 43533253 GCCGAACTGAACCTATGGA 60 43533193 43533211 AGTCACAAACTCAGTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec62 ENSRNOG00000009057 ENSRNOT00000012240 3 1 1 80 2 116219688 116219709 ATATGGACAGGAAAGAGAAAGG 58 116219345 116219648 GCATTGAAGGAATGCATCTC 58 NA Rattus norvegicus 81 Suv39h1l1 ENSRNOG00000039576 ENSRNOT00000008399 3 1 1 91 X 15182384 15182403 TCTTTGACCTGGACTACGTG 60 15182455 15182560 GGGATCACAACTATGGTTGAC 59 NA Rattus norvegicus 81 Cpa1 ENSRNOG00000010725 ENSRNOT00000014465 3 1 1 80 4 57956739 57956757 CTATTCCCAGCTCCTGCTC 60 57956800 57957318 TTAGCTAGCTGATCCAGCTC 59 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000080940,ENSRNOT00000045763 3 2 2 81 9 17920815 17924603 ATGACTCCCTCTGACACTG 58 17924648 17924666 AGGAGGATGAAGAGGAGGA 59 NA Rattus norvegicus 81 LOC100910472 ENSRNOG00000004484 ENSRNOT00000005925 1 1 1 93 7 118502749 118503109 ATGCAACTGTGGTTAGGAC 58 118503166 118503184 ATGGTGCAAGTATGGAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Noxo1 ENSRNOG00000025117 ENSRNOT00000029652 2 1 1 85 10 14064887 14065185 TTAGGCAGCTCCAGAAGAC 59 14065234 14065252 AAGCTTGGGAAGAACTCGT 59 NA Rattus norvegicus 81 Drgx ENSRNOG00000020045 ENSRNOT00000027186 1 1 1 80 16 8828362 8829514 CTTCACTCTTCAGCAGTTGG 59 8829556 8829575 AGCTCTTCTCTGGTGAAGAC 59 NA Rattus norvegicus 81 LOC679576 ENSRNOG00000014865 ENSRNOT00000019925 3 1 1 61 10 58784678 58784696 CTTAGGAGCAAGTCCTCCG 60 58784720 58784739 ACAGTCGATGTCTCCTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055878.1 ENSRNOG00000046286 ENSRNOT00000055284 1 1 1 89 7 14743244 14743265 GGTTAGAATAGTTGTGGAACCT 58 14743315 14743527 TGTGGCCATTCATTCACAG 59 NA Rattus norvegicus 81 Tmem63b ENSRNOG00000019743 ENSRNOT00000026728 1 1 1 80 9 17719078 17719098 GGAGAAAGTGAATGAGAAGCC 59 17719138 17719292 TCCTTTAGGATGATTGCTGTG 58 NA Rattus norvegicus 81 Igf2bp2 ENSRNOG00000025946 ENSRNOT00000036958 1 1 1 80 11 82545119 82545717 CCAAGATAACTATCTCATCCTTGC 59 82545754 82545774 CTTCAATGGTACCTTTCACCG 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 2 1 2 135 7 54022268 54022288 GGAGCAGTTATGTGTACACAG 59 54022612 54024193 CAGATTGAGCTTCACTTCCAG 59 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 2 2 2 80 6 55423171 55423190 GTCAGGGCTGATATAACTGG 58 55423233 55423756 GTTGTCTATCAGCATGGGT 57 NA Rattus norvegicus 81 Slc28a3 ENSRNOG00000018853 ENSRNOT00000025745 2 1 1 80 17 6501615 6501634 TGCTTTCCTTTGTGAACTCC 59 6501674 6502456 AACAAATGAGCTCGAAACTCAG 60 NA Rattus norvegicus 81 Aaas ENSRNOG00000013445 ENSRNOT00000018809 2 1 1 80 7 143939051 143939069 GGGTTACCAACTTGCTGTG 59 143938845 143939007 CCTCCCAGACTCGAAAGAC 60 NA Rattus norvegicus 81 LOC681356 ENSRNOG00000050666 ENSRNOT00000041763 3 1 1 60 18 40088135 40088153 CTGGTAACATACGTGCCTG 58 40088177 40088195 TCTCATCCACATTGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0913.2 ENSRNOG00000051284 ENSRNOT00000076885 2 1 1 60 1 90131159 90131180 GTTGCTTGAACTTCATTGAGGA 60 90131120 90131138 CCTTTGCGACCAAATCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065740.1 ENSRNOG00000061324 ENSRNOT00000073207 2 1 1 60 6 139997401 139997419 TTGCAGCAATATGGAGTGG 58 139997359 139997377 CTCAGTCGGGATTTGAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgcll1 ENSRNOG00000011193 ENSRNOT00000014926 2 1 1 83 8 83114877 83131459 AGATGGGTACCACAGATGG 59 83131506 83131524 TACAAGGACAGGATAGCGA 58 NA Rattus norvegicus 81 AABR07021086.1 ENSRNOG00000022174 ENSRNOT00000032908 2 1 1 80 13 56262896 56262915 TATCCATTGTGGATCTGGCA 59 56262957 56262990 CTTTAGTAGGCCCTACCACC 59 NA Rattus norvegicus 81 Rn60_1_1361.3 ENSRNOG00000012384 ENSRNOT00000016597 2 1 1 60 1 135042312 135042330 GCCTTAAAGGTAAAGGCCA 58 135042270 135042290 CTTCATCTCCATGTGTATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glod5 ENSRNOG00000039571 ENSRNOT00000008648 1 1 1 80 X 15225723 15228236 CTGAGAGTCCGTTATGGAGG 59 15228279 15228297 CGGTCATCACAATGTGGTC 59 NA Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000009584 2 1 2 80 5 64789829 64790596 GGAGTCAAAGGAGGAGTGG 59 64790637 64790658 TTTCCATAACTGTCCATCACGA 60 NA Rattus norvegicus 81 Stxbp6 ENSRNOG00000004198 ENSRNOT00000005618 3 1 1 80 6 65130322 65130341 CATCATTCGTCCGAAGATCC 59 65129452 65130280 CTGCAGAATCCCGATTAGGA 59 NA Rattus norvegicus 81 Nmnat2 ENSRNOG00000027697 ENSRNOT00000038183 1 1 1 80 13 70379489 70379508 CAAAGACCCACGTTATCCTG 59 70379551 70516926 TGGCTCTTTCGAACATCTG 58 NA Rattus norvegicus 81 Zfp54 ENSRNOG00000051578 ENSRNOT00000077642 1 1 1 80 1 61321752 61324543 GTCTCTGTTGAGAACTACTGC 59 61324583 61324603 CTCATTACACTGACAGGACTC 58 NA Rattus norvegicus 81 Pik3r6 ENSRNOG00000003992 ENSRNOT00000005405 3 1 1 80 10 55115248 55115266 TTCTGCCTCACTCCTAGAC 58 55115310 55116673 TTCTGGATCCTGTCCAGTC 58 NA Rattus norvegicus 81 Insm2 ENSRNOG00000007754 ENSRNOT00000010188 3 1 1 61 6 76384394 76384412 CTACAGGCTCTAGTGCACC 60 76384437 76384455 AGAATCACCTCGGAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim14 ENSRNOG00000002553 ENSRNOT00000003552 1 1 1 102 14 44440363 44447033 TTATCAATCTGCTCCGGCA 59 44454078 44454096 ATCACAGTGATGCTGATGC 58 NA Rattus norvegicus 81 Olr1509 ENSRNOG00000027806 ENSRNOT00000026926 1 1 1 60 10 60942173 60942194 TTATAGAACCCAAACTCCACAC 58 60942134 60942153 TCCAGCATAGACAAGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam129a ENSRNOG00000002403 ENSRNOT00000003320 1 1 1 80 13 69072505 69077873 GAGATGAAGTCCAGATCCTGAG 60 69077914 69077932 TCAGTTTAGGCAGCAGGTC 60 NA Rattus norvegicus 81 Tenm3 ENSRNOG00000012802 ENSRNOT00000017624 2 1 1 80 16 46856110 46856128 TGGCCTACACGTTCATCTG 60 46856172 46857445 CAACAGACACAACTGCCTC 59 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000049978 ENSRNOT00000071905 2 1 1 60 2 115153063 115153084 TGTTTCTTGTACACAGTGATGG 59 115153103 115153123 ACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910999 ENSRNOG00000046736 ENSRNOT00000075557 3 1 1 60 11 85015437 85015455 CTTCTGTGATGTTCCTGCC 59 85015476 85015497 GTACTCATAAACCCAAGTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgbd5 ENSRNOG00000026791 ENSRNOT00000058080 2 1 1 80 19 57134974 57138757 GCTTCATCATCCAGATCTATGTC 59 57134916 57134934 GCTGTGGCTTGTTCTTCAG 60 NA Rattus norvegicus 81 Cyp26b1 ENSRNOG00000015076 ENSRNOT00000020505 2 1 1 83 4 116265450 116265468 ATCAAGGAGGTCATGAGGC 59 116265035 116265403 CTGGAAACCATCCAGTTCG 59 NA Rattus norvegicus 81 Tubgcp5 ENSRNOG00000011480 ENSRNOT00000055989 3 1 1 80 1 114203973 114203991 TGGCAAGTCAATGCAACTG 59 114204035 114207472 CTTTCTGCATCTCTGGCTG 59 NA Rattus norvegicus 81 Galnt13 ENSRNOG00000005335 ENSRNOT00000048804 2 1 1 80 3 40330372 40330393 ATAGTGTCATAAATCGCTCACC 59 40330432 40331585 TGAGGAAATCTCTTTCACTGG 58 NA Rattus norvegicus 81 Spag8 ENSRNOG00000032539 ENSRNOT00000084216,ENSRNOT00000040641 1 2 2 80 5 59148423 59148442 CACACCTGTTATCCACTTCG 59 59148107 59148201 CTGCACCTCTTTACAGATCTG 59 NA Rattus norvegicus 81 Tbc1d25 ENSRNOG00000005303 ENSRNOT00000007130 3 1 1 93 X 15064901 15066483 CGAGTCAAGAAATGTGAGAGC 59 15066538 15066556 GGATATGCTGCAACACGTC 59 NA Rattus norvegicus 81 Jakmip1 ENSRNOG00000004998 ENSRNOT00000006771 3 1 1 81 14 78431593 78431612 AGACGTCCTACAACACAGAC 60 78430190 78431550 TCTTCTCTGGTTGTGGTCTC 59 NA Rattus norvegicus 81 Tnni3k ENSRNOG00000028225 ENSRNOT00000030341 2 1 1 80 2 261264936 261264955 GTGAATGTTCAAGATGCCGT 59 261261694 261264893 AAGGACACTGGTTACCTGC 60 NA Rattus norvegicus 81 Foxp2 ENSRNOG00000054508 ENSRNOT00000087146 3 1 1 80 4 41908773 41908932 ATAAGGCAGGCTATCATGGAG 60 41908973 41908992 AGCAAATGTCCGTGTAAACC 59 NA Rattus norvegicus 81 Cog2 ENSRNOG00000018228 ENSRNOT00000058074 1 1 1 80 19 57299878 57299896 CATTGACAAGACACGGGAC 59 57299940 57301737 CGCTCAACAATCACCTCAC 59 NA Rattus norvegicus 81 AC115158.1 ENSRNOG00000046391 ENSRNOT00000039829 3 1 1 93 6 76050500 76051997 ACATCAACCCTCTCAGTGTG 60 76052051 76052071 ACTCATCAATGGCATACTGGT 60 NA Rattus norvegicus 81 Crmp1 ENSRNOG00000004781 ENSRNOT00000065334 3 1 1 80 14 78277688 78277706 ATTGCCCTGTGTACATCAC 58 78276933 78277645 CAAGAGGTCCTTTCTTCCTG 58 NA Rattus norvegicus 81 Lyrm4 ENSRNOG00000047970 ENSRNOT00000072056 3 1 1 113 17 29457563 29457582 AATAAGAGATGCCTTCCGAG 57 29457658 29552357 CCAATAAGGACCTGTCTGC 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 1 3 5 157 20 5416725 5416837 ACTTTCCCAGAGATGGGAG 58 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Diras3 ENSRNOG00000033736 ENSRNOT00000052237 3 1 1 84 6 135939364 135939382 GATCGAAGTAAACCGGGCT 60 135939298 135939316 GTACAGGTCCTTGAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 1 4 4 80 16 54382448 54383439 GGCAATTTCAAGACAACTTTCC 59 54383478 54383498 AACCTCTTGTTGACCTTTGAC 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000078114 1 1 3 80 4 164352076 164352096 GCATGAATGTAAACAGACCTG 58 164345867 164352036 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 1 1 1 63 7 5655691 5657534 ATGACCAACAACTGCAGGT 60 5657559 5657579 GTTATGCTCAGTGAGTAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07009978.1 ENSRNOG00000038552 ENSRNOT00000058810 2 1 1 76 2 119139956 119139974 CAAGGTCACCTGGAAAGAG 58 119139898 119139916 CTTTCCGAAGACTGTCGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdgf1 ENSRNOG00000037171 ENSRNOT00000040840 1 1 1 88 8 119218168 119218186 TAACGACATTCGGGACCAG 60 119217675 119218119 GCAACTTATTGCTCTGTATCCC 60 NA Rattus norvegicus 81 Nmrk1 ENSRNOG00000012665 ENSRNOT00000016930 2 1 1 80 1 234739347 234742695 AATTGGTGGTGTGACAAATGG 60 234739287 234739306 GATATTACGCTGCAGTTGGG 59 NA Rattus norvegicus 81 Murc ENSRNOG00000008027 ENSRNOT00000010561 3 1 1 82 5 64413403 64420179 AATCTTCCAGGAGGATGTTCC 60 64420223 64420241 CAGCTTCCTCCTCGTTCTC 60 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000017293,ENSRNOT00000083912 3 2 2 80 13 56901970 56904804 TCGATGTGTTGAATCAACAGG 59 56901910 56901929 ACTGGTAATGACAAGGAGGT 58 NA Rattus norvegicus 81 Rec114 ENSRNOG00000009332 ENSRNOT00000012381 1 1 1 80 8 63459316 63507514 ACAGACACTACTGGAAGGG 58 63459254 63459272 AACAGAAGACAGTCCATGC 58 NA Rattus norvegicus 81 Krtap14 ENSRNOG00000001567 ENSRNOT00000002132 2 1 1 60 11 28777290 28777308 GGATTCGAGGGTCCTTCAG 60 28777248 28777267 GAACCAAGTCCCAGAGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911758 ENSRNOG00000049320 ENSRNOT00000072554 3 1 1 60 4 1356302 1356323 CCTCACAGGCTTAATGTTTAGG 59 1356341 1356362 CATGTAGTGATTGATGATGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vkorc1 ENSRNOG00000050828 ENSRNOT00000073596 1 1 1 80 1 199339210 199340073 GTTGTTAGGTTGCTTGAGGG 59 199339149 199339167 TACAGAGAACCAGCGACAG 59 NA Rattus norvegicus 81 Cd7 ENSRNOG00000036674 ENSRNOT00000054934 1 1 1 80 10 110230916 110230936 CCATTGCTGTAAGCTTCTTCC 60 110230320 110230876 GTTTCTTGATCTGCGTCTTCC 60 NA Rattus norvegicus 81 Tub ENSRNOG00000046566 ENSRNOT00000074636 2 1 1 80 1 173622953 173622974 CAGAAGGCATCATCTTCTACAC 59 173623012 173624383 TAGGACATTTGTCTCATAGCAC 58 NA Rattus norvegicus 81 AABR07065889.1 ENSRNOG00000047011 ENSRNOT00000046694 3 1 1 60 6 143768769 143768788 TGAGAAGTTTAAAGGCAGGG 58 143768728 143768746 CATGTAGGCTGTGTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559639 ENSRNOG00000038735 ENSRNOT00000059150 2 1 1 60 6 91113786 91113806 AACTTCTTGGTGTCCTTACTC 58 91113746 91113764 TCTTGATGTACAGAGCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc3 ENSRNOG00000008673 ENSRNOT00000011499 3 1 1 86 12 39656098 39656116 CCAACTTTCCCATTCCTGG 58 39655011 39656048 GCATCGTTTCATCCTCCTG 59 NA Rattus norvegicus 81 Olr1533 ENSRNOG00000050062 ENSRNOT00000072466 3 1 1 60 11 45667003 45667023 ACACCAAAGATGCTACTAGAC 58 45666963 45666984 TGCATTCAGAGAAAGAGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 3 2 2 80 13 73437487 73437505 TGCTGTCACTGACTTTCCA 59 73435866 73437443 CTGGACTCTACCAGCACAG 60 NA Rattus norvegicus 81 Rbm11 ENSRNOG00000029147 ENSRNOT00000047240 2 1 1 80 11 14011010 14011028 GTTCTCGCTCTTCTGAACC 58 14011071 14011610 TTTCATCGTTCCTGAAGCTG 59 NA Rattus norvegicus 81 Msgn1 ENSRNOG00000028518 ENSRNOT00000006482 1 1 1 60 6 36876433 36876451 GTCAAGATGTCTGTCCAGC 58 36876391 36876409 TCCGCATCCTGAGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd9 ENSRNOG00000001339 ENSRNOT00000057716 1 1 1 91 12 38787370 38787388 AATGTCATGGTGATCCGCA 60 38786755 38787316 GTAATATTGCAGCCCAGCAG 60 NA Rattus norvegicus 81 Mir6324 ENSRNOG00000046478 ENSRNOT00000075626 3 1 1 60 11 36383573 36383591 TCCAACTGAGTCAGTAGGC 59 36383531 36383551 GGTCAGTGAAATTGCTCAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rita1 ENSRNOG00000037720 ENSRNOT00000057242 1 1 1 69 12 41486401 41486419 CCAAATCTCACACCAAGGA 57 41487984 41488003 ACTCATCACAGTAGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Pim2 ENSRNOG00000008177 ENSRNOT00000011207 3 1 1 84 X 15463959 15464536 CTTTGATGGGACAAGGGTG 59 15463893 15463911 CAGTGACCAGACAGTAGCT 59 NA Rattus norvegicus 81 Trpc7 ENSRNOG00000012727 ENSRNOT00000016982 1 1 1 80 17 8258655 8258674 TGCAAATCTAAGGCCAAACG 60 8258717 8259595 CTGGTAGCGAGTCTTCCTG 60 NA Rattus norvegicus 81 Mep1a ENSRNOG00000011022 ENSRNOT00000014791 1 1 1 80 9 20048510 20051621 TTTCAGAAATCAACTCAGCTGC 60 20052625 20052643 CTCTCAGGGCATTTCTGGT 59 NA Rattus norvegicus 81 Mep1a ENSRNOG00000011022 ENSRNOT00000014791 2 1 1 81 9 20052625 20052643 ACCAGAAATGCCCTGAGAG 59 20052686 20056366 CGTTCAGATCCAGATTGTCAG 59 NA Rattus norvegicus 81 Helb ENSRNOG00000004189 ENSRNOT00000038147 3 1 1 80 7 64871304 64871323 ACTTTGCTTCAAGGGAAGGA 60 64870566 64871263 ACAGTCTTGCCTTCTAAATGC 59 NA Rattus norvegicus 81 Atp5s ENSRNOG00000004893 ENSRNOT00000006509 3 1 1 82 6 92072662 92074841 TTTGCGACACTTTAAGAACCTC 60 92074884 92074902 AGACTTCGGCAAGGTACTC 59 NA Rattus norvegicus 81 Sh3gl1 ENSRNOG00000049683 ENSRNOT00000074695 3 1 1 80 9 11053095 11053116 CTAGAGAAGTTTGAGGAGTCCA 59 11053156 11053311 GCTCACCTGCTCAATATCAG 59 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625,ENSRNOT00000092104 2 3 3 80 5 12467698 12473132 GGAGGAGAAAGAGAAAGACCC 60 12467638 12467657 CTTGGAATAGAGGCCTCTCC 59 NA Rattus norvegicus 81 Krtap1-1 ENSRNOG00000012955 ENSRNOT00000037980 3 1 1 95 10 87503079 87503097 TCCTACTGTGGACAGTCCT 59 87503002 87503020 TTAACAGCTGGGCTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923,ENSRNOT00000049857 1 2 2 92 3 122699737 122699755 AAGAGAAGCGAGTCCTTGG 59 122698204 122699683 CAATGCCAGTATCTTTGGGAG 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335,ENSRNOT00000078010,ENSRNOT00000035448 2 3 3 81 17 21639888 21639907 CTGGACAGGTAACCTCAGAG 59 21637130 21639845 GTCATGTACGTAGTGACCGT 60 NA Rattus norvegicus 81 Krt39 ENSRNOG00000031422 ENSRNOT00000051080 1 1 1 80 10 87436150 87436169 AAATTCCAGACTGGTCTCAC 58 87435460 87436110 GACAATTCAGCTTCATAGTTGG 58 NA Rattus norvegicus 81 LOC100911243 ENSRNOG00000042470 ENSRNOT00000042140 1 1 1 138 X 15419088 15419106 GTAGGGAGCATCCTAACCC 59 15422529 15422547 TAGACTTTGTTGGCAAGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1566264 ENSRNOG00000036836 ENSRNOT00000051929 2 1 1 80 7 144886893 144886913 AGAACCATACCAAACACAACC 59 144886722 144886855 GAGATTCATATCTTTGTGACCCG 59 NA Rattus norvegicus 81 AABR07033162.1 ENSRNOG00000030674 ENSRNOT00000052022 1 1 1 78 11 8268907 8268925 GTACCAGAAGAGGGTCACG 60 8268969 8268987 CTGTTCTTTCCTGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388,ENSRNOT00000042072 1 2 2 80 1 25716656 25716674 AAACAACACCGAAAGCCAG 59 25710612 25716613 ACGCATACTGATCTTTCTGC 59 NA Rattus norvegicus 81 Akap6 ENSRNOG00000004841 ENSRNOT00000006562 2 1 1 80 6 73659005 73659023 ACCTGACCTACTCAGTCCA 59 73659066 73733954 CCTCACAAATGTCCTTCAGC 59 NA Rattus norvegicus 81 AABR07033020.1 ENSRNOG00000018224 ENSRNOT00000024520 3 1 1 83 11 1773322 1773347 CATTGTTGGCTATGATGAAGAC 58 1773388 1773409 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904,ENSRNOT00000015223 3 2 2 80 9 20124778 20125410 GTGACACAGTTCACCAAGG 59 20124716 20124735 ATGAATTGATCCAGGCAGTG 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160,ENSRNOT00000068444 3 2 2 83 3 79860547 79861113 AAGAGATGCTGAAGTTTGCC 59 79861159 79861177 TCAGGTAGCTTTCGAGCAG 60 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 2 2 2 80 10 58368979 58370206 GAAGAGCAAAGAATGGCCG 60 58370248 58370268 CCATACTTGAGCCAGTCTAGG 60 NA Rattus norvegicus 81 Tor1aip1 ENSRNOG00000003946 ENSRNOT00000005280,ENSRNOT00000005296 1 2 2 80 13 73702261 73702279 ATGAACCTTCTTCCCAACC 57 73700334 73702219 CACTCATCACTGAAGTCTCTG 58 NA Rattus norvegicus 81 Pkd2 ENSRNOG00000002146 ENSRNOT00000002916 3 1 1 80 14 6604825 6608157 GAAGAGTTCCAAGTACTGGTG 58 6604765 6604783 CACAGCATCGATCTTGGAC 59 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078690 3 1 5 80 4 164876886 164886779 TTGAATTGTGATTTGGTGGC 58 164876825 164876846 ATCATGTAGACCTGTCATACTG 57 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786,ENSRNOT00000024465 3 2 2 80 1 255623366 255623385 GACGCACATATTGAAGTTGG 58 255623427 255625847 AAGAGTAGTTACCAGGTCGT 58 NA Rattus norvegicus 81 Timm17b ENSRNOG00000025156 ENSRNOT00000037066 2 1 1 101 X 15346145 15346163 ATTGTGGATGATTGTGGCG 59 15343545 15346080 GTGTCGAATTCCAACAGGG 59 NA Rattus norvegicus 81 MGC114246 ENSRNOG00000039990 ENSRNOT00000061470 1 1 1 80 17 3927486 3927961 CCATATGAAGGGAAAGATGGAC 59 3928002 3928020 GGGTAGGGACACAAATCCT 59 NA Rattus norvegicus 81 Cyp4f4 ENSRNOG00000032895 ENSRNOT00000041034 1 1 1 80 7 14901782 14901801 GGATGATATCCTCAAGGCCA 59 14901843 14903752 CCATCTTCATCCTTGGTCAG 58 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 2 2 2 80 8 56499903 56501884 TGAATCTGGGTCCATTTGTG 58 56501927 56501945 AGAGCGAGTCAGTCTTCAG 59 NA Rattus norvegicus 81 Hoxc8 ENSRNOG00000028619 ENSRNOT00000031404 1 1 1 60 7 144605484 144605503 TGTTTCCATGGATGAGACCC 60 144606866 144606884 CGGCTGTAAGTTTGTCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Tmem132a ENSRNOG00000021338 ENSRNOT00000028971 1 1 1 80 1 226914454 226914804 CTCTATCGAGGTTCGATCCC 59 226914393 226914411 ACCGAGACCTTGTCATCTG 59 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 3 1 2 93 4 39519677 39519695 ACAGGAAGAATCCCTAGGG 58 39522601 39526703 CATACAGCTTTGTTCTTCTTGG 58 NA Rattus norvegicus 81 Sparcl1 ENSRNOG00000015093 ENSRNOT00000020357 1 1 1 80 14 7019019 7019040 ACTACCACATGTATGTGTATCC 58 7019080 7019639 AATGTGTCAAGATCCTGTCC 58 NA Rattus norvegicus 81 LOC100911672 ENSRNOG00000049575 ENSRNOT00000051841 3 1 1 88 9 20277512 20277530 CACTGGAACAGCAACAGTG 59 20277579 20277732 CTTCAGGTGACTGTAGTAGTCC 60 NA Rattus norvegicus 81 Mcm8 ENSRNOG00000021272 ENSRNOT00000028898 3 1 1 80 3 125494637 125495178 CAGAAAGACTAAAGGTGGCTC 59 125495218 125495238 GTGCATAGCCTATGTACTTCC 58 NA Rattus norvegicus 81 LOC100359479 ENSRNOG00000043383 ENSRNOT00000014965 3 1 1 82 8 55490092 55490751 TAAAGTCCTTGTGAGCGAGAG 60 55489744 55489765 GGGCTTTAGCAAAGAGAATCTC 60 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 3 2 2 84 7 54912820 54916061 GATTTCAGGGCATTCAACAG 58 54916108 54916126 AACTTCATCAGGCTTGCTG 59 NA Rattus norvegicus 81 Fam195a ENSRNOG00000020029 ENSRNOT00000027170 2 1 1 95 10 15231453 15231698 GATTTGTGTCCGAAGCCTG 59 15231376 15231394 TGCTCTCCACATACTGCAC 60 NA Rattus norvegicus 81 Skiv2l ENSRNOG00000000421 ENSRNOT00000000481 1 1 1 80 20 4526035 4526153 ATATCAATGATGCTGAGCGTG 59 4525975 4525993 TCAGCAGGATGATGGAGAC 59 NA Rattus norvegicus 81 RGD1304622 ENSRNOG00000000040 ENSRNOT00000004704 1 1 1 80 13 72866685 72869288 ACAGCATCTGTTTAAGGTGTC 59 72866625 72866643 CCACCTAGCAGAGAATGGA 59 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200 3 1 2 155 2 204886231 204932378 ATCGCTCTCCTTCACAGAG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA InUTR Rattus norvegicus 81 Adam11 ENSRNOG00000002753 ENSRNOT00000064429 1 1 1 80 10 90738949 90739124 CCTGGAGCTAAACCATCAC 58 90739168 90739186 GTACTGTGTTGCCTTGTCC 59 NA Rattus norvegicus 81 Fam20b ENSRNOG00000004337 ENSRNOT00000006018 2 1 1 80 13 74298641 74302395 CATTTGGACAGGATTCTGGG 59 74298580 74298598 AGGCTTAACTTCTGTTCGC 58 NA Rattus norvegicus 81 AABR07065789.3 ENSRNOG00000058824 ENSRNOT00000040556 2 1 1 60 6 141321086 141321105 GTGAAGCTGTTGGAATCTGG 59 141321045 141321064 AGGAGAGTCTCATAGAACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054456.1 ENSRNOG00000014425 ENSRNOT00000019331 1 1 1 87 3 154437857 154437875 ACAAGTTCAGGCCAGAGAC 60 154437926 154437961 AAGGTGGTGAAGAGGACAG 59 NA Rattus norvegicus 81 Spin2a ENSRNOG00000031286 ENSRNOT00000052281 1 1 1 121 X 17963951 17964613 AGTGAGCAGGTATGAAGACC 59 17963849 17963867 TTGCCTCTTCTGAGAAGCT 59 NA InUTR Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 1 2 2 91 10 36590566 36590584 AAGGTGATCTCCCTGTTGC 60 36590639 36598162 TGACTGCACTTCAATCCGA 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000078821,ENSRNOT00000038396 3 2 4 80 4 167421967 167483623 AAACTCAACCTGAGGAATCCA 59 167483664 167483683 CAGGTTGAGTTTCCTGTCCT 60 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659,ENSRNOT00000046622 3 2 4 106 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353600 167353619 ATGCTCTTGAACATTCCCTG 58 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 1 2 2 80 17 12643344 12653925 AAATTCCTGATCAGGGCCA 59 12643282 12643302 GCGATAGTGTAATACCTTCCC 58 NA Rattus norvegicus 81 Lamc1 ENSRNOG00000002680 ENSRNOT00000003605 1 1 1 80 13 70688935 70689969 GTGAAGTACATCTTCAGACTCC 58 70688876 70688897 GAGCTTCTGAAATTCAAATGGG 58 NA Rattus norvegicus 81 AABR07065823.2 ENSRNOG00000050708 ENSRNOT00000075707 2 1 1 60 6 142903301 142903319 ATGGAAAGAGCCTTGAGTG 57 142903259 142903279 TTGAAGTTAGTAGCACCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065823.2 ENSRNOG00000050708 ENSRNOT00000075707 3 1 1 60 6 142903343 142903367 CTGGTTATACATTCACTGACTACTG 59 142903307 142903326 AGGCTCTTTCCATGACTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stom ENSRNOG00000019147 ENSRNOT00000025904 3 1 1 80 3 14527709 14538116 GAGTCCTTCAGGGATAATTCC 58 14527649 14527667 AAGCACGAAGATGAACGAG 58 NA Rattus norvegicus 81 Praf2 ENSRNOG00000057147 ENSRNOT00000085397 3 1 1 62 X 15620709 15620728 CAACAACCTCCTCTACTACC 57 15619644 15619662 CAGGAACAAGAGCACTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Moxd2 ENSRNOG00000012916 ENSRNOT00000017495 2 1 1 80 4 69123937 69124436 CATGATCATGACATTACGAGTG 58 69123878 69123896 CTCCCGATTCATCTTTGGT 57 NA Rattus norvegicus 81 Tnfsf12 ENSRNOG00000045670 ENSRNOT00000064401 3 1 1 96 10 56298572 56298590 TCCTGGAACAACTAGTCCG 59 56297632 56297731 TGTGGATGAACCTCATAATGG 58 NA Rattus norvegicus 81 Tspan14 ENSRNOG00000010813 ENSRNOT00000014772 1 1 1 81 16 17588279 17588297 TTCGAGAGCAACATCAGGT 59 17588342 17590081 AGCACTGATTGGCTTTCTG 59 NA Rattus norvegicus 81 LOC681380 ENSRNOG00000048796 ENSRNOT00000043416 1 1 1 80 1 24922409 24923609 CATGAAGAACAGGCCACAC 59 24922347 24922365 AGAATTGACATGACCGCCT 59 NA Rattus norvegicus 81 Tymp ENSRNOG00000032394 ENSRNOT00000040541 1 1 1 80 7 130345774 130345793 TGATGGAATCCTGTATGCTG 58 130345609 130345731 TTACTGAGGATTGACGCTG 57 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000025104,ENSRNOT00000087534 3 2 2 81 1 165651357 165651378 GTCAGAACAGAAAGAGGAAGTG 59 165651418 165654236 TTGACACTTGCCTCTTATCAG 58 NA Rattus norvegicus 81 Trpa1 ENSRNOG00000007354 ENSRNOT00000009874 1 1 1 80 5 3823983 3824375 GAATTTCCAAGATGCCTTCAG 58 3824416 3824435 CGGTAATTGATGTCTCCCAG 58 NA Rattus norvegicus 81 Ccdc120 ENSRNOG00000009687 ENSRNOT00000082383,ENSRNOT00000012880 2 2 2 112 X 15611734 15611752 TGAACGACCTCAGTTGGTC 60 15611828 15612196 CCTCAAGAGCCAGTTCCTC 60 NA Rattus norvegicus 81 Sycn ENSRNOG00000019879 ENSRNOT00000026907 2 1 1 81 1 85219882 85219900 CCTCGACTGGAAGAGTACC 59 85218950 85219840 ATCAATAGCACTTGCAGTAGAG 58 NA Rattus norvegicus 81 Ndufb8 ENSRNOG00000014078 ENSRNOT00000019039 3 1 1 87 1 264301090 264301899 GTGAACCGATACACTGGGA 59 264301021 264301040 CTACACATGACATCCCAGGA 59 NA Rattus norvegicus 81 Ptchd4 ENSRNOG00000012708 ENSRNOT00000016940 2 1 1 80 9 21275942 21275962 TCTTCTTCATCACTGATGGGA 59 21142693 21275902 CTCCTTTAGTTCCATGACCCA 60 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 2 2 2 80 8 54973649 54973668 ATGATGGGAGAAGCCTAGAC 59 54969925 54973609 TTGCCTTATAGACCTGATCGAG 60 NA Rattus norvegicus 81 AABR07013095.1 ENSRNOG00000049260 ENSRNOT00000071934 2 1 1 60 2 222935929 222935951 GATGTGATATCCAGATGAACCAG 59 222935891 222935912 ACTCGTTCTCCAATAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000085270,ENSRNOT00000078412 3 2 4 116 20 12858050 12858069 ACTTCATTTGCTGTCCAAGC 60 12856519 12857385 ATTGTTGTCTGGGACCTGG 60 NA Rattus norvegicus 81 Mff ENSRNOG00000048016 ENSRNOT00000020712,ENSRNOT00000089451 1 2 2 85 9 88496585 88496603 TGCTCACACTGAGTGAGAG 59 88496652 88501541 AACTGCTCGGATCTCTTCG 60 NA Rattus norvegicus 81 Pip4k2c ENSRNOG00000005138 ENSRNOT00000067774,ENSRNOT00000079327 3 2 2 80 7 70492495 70493466 ATCATGATTACTTGGTGTCCC 58 70492435 70492454 CATAGGAGATAAGGAAGCGG 57 NA Rattus norvegicus 81 Tmem151b ENSRNOG00000019958 ENSRNOT00000031706 3 1 1 167 9 17844054 17844072 CAATGGAGATGCCTACACG 58 17844915 17844933 CTGAAGCACTTGGTGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000058315,ENSRNOT00000091652,ENSRNOT00000010482,ENSRNOT00000079769 2 4 4 80 14 80071135 80071780 AGCAGGAAGAAGACAACGT 59 80071073 80071091 AGACTGACTGTCCAAGTCC 59 NA Rattus norvegicus 81 Slco6b1 ENSRNOG00000019252 ENSRNOT00000026099 1 1 1 80 9 104427979 104437174 CGTGCTCTTTGGTATCTGG 58 104427917 104427936 GATCAAAGCCAAGGACTCTG 59 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000083151,ENSRNOT00000051612 1 2 2 80 8 91392230 91396937 GAGGTTCAAGTAAGGTGTTTCAG 60 91396977 91396995 CTGCGTCTTCAAGGTTCAC 59 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 2 2 2 80 1 166433673 166453786 CAAGATCAAGTGCAGGATGG 59 166453827 166453847 TTTCGGTATTCTATGTCGTGC 59 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 2 2 2 80 5 59517452 59517783 AATTCTGGGAGTAGGCATCTC 59 59517392 59517411 TGTATCAGCTTGGTCGAGTG 60 NA Rattus norvegicus 81 Aspn ENSRNOG00000050431 ENSRNOT00000074041 1 1 1 80 17 15511743 15511761 CGATTTGTTTCCGACATGC 58 15509658 15511702 ACTGATGTCAAACCTAGATCAG 58 NA Rattus norvegicus 81 Zfp719 ENSRNOG00000033729 ENSRNOT00000024645 3 1 1 85 1 99507961 99510585 TTGGCAGTGGGTAAATTGC 59 99510634 99510652 ACTTCGTTGGTTGCATCAG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227,ENSRNOT00000066222 2 2 2 80 8 58375460 58375481 TCAGAGTTTCATCAACTACTGC 59 58375522 58378617 AGAAGGTTATCACTGCCCG 60 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 3 1 1 82 13 83200379 83200397 TGTGAGCTTAAGAACCCAG 57 83199569 83200335 AAATTACAGCTCTCATGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rgma ENSRNOG00000012874 ENSRNOT00000076446 1 1 1 80 1 134732174 134732192 AATTACCTGAACGTGCAGG 58 134732236 134740038 GATGATGGTGAGCTTGCTG 59 NA Rattus norvegicus 81 Map3k14 ENSRNOG00000003278 ENSRNOT00000004532 2 1 1 81 10 91326080 91326099 GAATAGCCAAGAGTTCAGCC 59 91324733 91326036 AAGACTCTCAGACTGGCTG 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685,ENSRNOT00000078530,ENSRNOT00000088002 2 3 4 80 12 38395623 38399711 GACACTAGGGTGGCTACAG 59 38399753 38399773 TACTTCCTGTACTCTCAACGC 60 NA Rattus norvegicus 81 Fmo1 ENSRNOG00000034191 ENSRNOT00000041908,ENSRNOT00000081551 1 2 2 80 13 80738306 80738326 CTGGAAGAAGGACTAGAACCC 60 80727379 80738267 TTCAACATGTTCCGTGAATCTC 59 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000059465 ENSRNOT00000086907 3 1 1 60 17 34746611 34746631 GGAATGAGCCTTTCATTCTCG 60 34746653 34746671 TCTGCCGATGAAGAAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gosr2 ENSRNOG00000003506 ENSRNOT00000005046 3 1 1 81 10 91742940 91745497 CTTCACCACTAACGACTCTG 58 91742878 91742896 GTGGTGAATGTTCTGGAGG 58 NA Rattus norvegicus 81 Olr1513 ENSRNOG00000034227 ENSRNOT00000043016 2 1 1 60 10 61033129 61033150 AGTCTTCTACCACAGAGTTCAC 60 61033171 61033189 AAATATTCCTGCTCCCGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660,ENSRNOT00000080031 1 2 2 80 17 29326208 29360201 CAAGCATGAGTTATTTGCTGG 58 29326148 29326166 TGCTTATGAGCAGAACGAG 58 NA Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000041550 2 1 2 83 9 91668214 91674223 ATTGAGATGGTCACGTATCTG 58 91668151 91668169 CTCAATGACTGGCTTCTCG 58 NA Rattus norvegicus 81 Nphp1 ENSRNOG00000015756 ENSRNOT00000067727 3 1 1 80 3 120334116 120334136 CAGGTCCAATTCTTCAACTCC 59 120332606 120334074 CTCTCACCAGTCGAATTGC 59 NA Rattus norvegicus 81 Lactb2 ENSRNOG00000007829 ENSRNOT00000010369 1 1 1 80 5 4992113 5001307 TATATCCAGGACATGGCCC 58 5001349 5001369 CTTCTCGGTTATTTCGGTGAG 59 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 2 2 3 80 7 14540619 14540640 ATGAGTTCCTGAAGTCTAAGAC 57 14540681 14541011 TTCCATGTTCATCCTTGGC 58 NA Rattus norvegicus 81 Adgrf4 ENSRNOG00000012535 ENSRNOT00000016906 3 1 1 82 9 20965316 20967978 GCCAACACAAGGTAAATGTG 58 20968023 20968041 TTTCTCCACGGAAGTTCCA 59 NA Rattus norvegicus 81 Cdc7 ENSRNOG00000002105 ENSRNOT00000068520 2 1 1 88 14 3835586 3836373 GCAGAGAAACTCATCAAGCA 59 3835517 3835535 ACAGCCTTTGTAGAAACGG 58 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508,ENSRNOT00000035009 2 2 2 80 16 7378967 7378986 AGTTCATCTACGGCTACGAG 59 7378666 7378924 GGGTCAGATAGCACCTGTC 60 NA Rattus norvegicus 81 Frem2 ENSRNOG00000021670 ENSRNOT00000031487 2 1 1 80 2 142769492 142770971 TATCATCTGCATTACGGCCT 59 142769431 142769449 TTGATGTTCTCACTGGCAC 58 NA Rattus norvegicus 81 Arrb2 ENSRNOG00000019308 ENSRNOT00000026207 3 1 1 80 10 57043764 57043782 CTTGGACAAAGTGGATCCT 57 57043930 57044134 AGGGTCACAAACACTTTCC 58 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 1 2 2 80 7 18536599 18539174 AGTCAAAGAAGATCCTGATGGT 59 18536423 18536443 GCTACAAATACTGTGCTTCCA 59 NA Rattus norvegicus 81 Zscan10 ENSRNOG00000021782 ENSRNOT00000036563 3 1 1 98 10 12936355 12936373 TTCCAGAGACCAAGAGCTG 59 12936583 12937706 CTTCCAACTCCAAGAGGGT 59 NA Rattus norvegicus 81 Atxn1 ENSRNOG00000016998 ENSRNOT00000023140 1 1 1 94 17 19520513 19520531 TACTGTGGAGAGGATCGAG 58 19520589 19531970 AAACTTCGACACTGACCTG 58 NA Rattus norvegicus 81 Adcy10 ENSRNOG00000053410 ENSRNOT00000082677 3 1 1 80 13 83778417 83779301 AAGAGCAGATACAAGCATTTGG 59 83779342 83779360 CTTGCTGAAGATGTGCTCC 59 NA Rattus norvegicus 81 Abhd13 ENSRNOG00000014598 ENSRNOT00000019563 1 1 1 248 16 85330040 85330058 GGAGAACAGGTTATGTGGG 58 85320259 85329828 CTCCACGTAGGTGTCTCAG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Slco1a2 ENSRNOG00000031249 ENSRNOT00000049569 3 1 1 80 4 176459939 176459960 TTTACCTTCTTGCCCAAATACC 59 176458357 176459904 GTTATAAACACCTATGAGAAGGACC 59 NA Rattus norvegicus 81 Vom2r71 ENSRNOG00000046835 ENSRNOT00000049544 3 1 1 80 14 923732 923751 GTCATTCCCATTTGTACCCT 58 923791 972856 ATCTCTGTCAATAAAGGGAGGA 59 NA Rattus norvegicus 81 Vom2r56 ENSRNOG00000039136 ENSRNOT00000049266 3 1 1 81 7 19077763 19078175 AGATGCATGCAGGTAAATGAC 59 19077702 19077723 TTCCTTGATTAACAGTCACTGG 58 NA Rattus norvegicus 81 Lgals2 ENSRNOG00000008539 ENSRNOT00000011750 2 1 1 80 7 120071716 120072607 GTTAACAGCTTCACCATTAACC 58 120071657 120071675 GGTGGATTCATTGAAGCGA 58 NA Rattus norvegicus 81 Rabep1 ENSRNOG00000005015 ENSRNOT00000041443 1 1 1 80 10 57578603 57578970 TCAGACTCTTCAGGTGCAG 59 57579011 57579032 TTGGTATCATTCAGAATTGCCC 59 NA Rattus norvegicus 81 Rabep1 ENSRNOG00000005015 ENSRNOT00000041443 3 1 1 80 10 57578601 57578968 TCTCAGACTCTTCAGGTGC 59 57579010 57579030 GGTATCATTCAGAATTGCCCG 60 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000064068 3 1 2 92 13 70175092 70175110 GAGAACAAGTTCGTGGACG 59 70175166 70177309 CATGTTTCCTTGCCGTAGG 59 NA Rattus norvegicus 81 Glmn ENSRNOG00000002054 ENSRNOT00000088078,ENSRNOT00000061583 2 2 2 80 14 3217069 3217980 TGGTGAAGTTGTGTAATCCA 57 3218022 3218041 GAGATATCTGTTTCCCGGAG 57 NA Rattus norvegicus 81 Rnf220 ENSRNOG00000019236 ENSRNOT00000026201 2 1 1 80 5 136135735 136135753 GAATCCAGACAGTGATGCT 57 136135506 136135691 TCAGCCTCTGTGTATTGTG 57 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000014871,ENSRNOT00000087803 3 2 2 99 2 118987871 118987975 ACACGACTTGTGCTTTGTG 59 118987790 118987809 AAGTCAGGACTCAGTGAGAG 59 NA Rattus norvegicus 81 Akap4 ENSRNOG00000002921 ENSRNOT00000003939 1 1 1 80 X 16302521 16306012 TGTGGCACTACAAAGATGTC 58 16302460 16302479 TGGGCTGTAAAGATCTACCT 58 NA Rattus norvegicus 81 Slc26a1 ENSRNOG00000000041 ENSRNOT00000000047 1 1 1 85 14 2052583 2053343 GCTTTATCAGGTCCTCATGG 58 2053391 2053409 CCATAGCAAAGCCATCGAG 59 NA Rattus norvegicus 81 Nr1h5 ENSRNOG00000023073 ENSRNOT00000036229 1 1 1 80 2 205441005 205441027 CTTCTGAATACCATAGTGACTGC 59 205440807 205440966 GGAATACTCCTGCAGAAGTG 58 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 2 2 2 80 2 96497888 96497907 TCCTTTGGGAAACAAACCTC 58 96488699 96497845 GACTTGGTGTTAGCTCCTG 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281,ENSRNOT00000057036 2 3 3 80 12 46399429 46402469 AAATTCTGGAGCTGGAGGA 58 46399367 46399385 GTTCCTTCTGCTTCAGGTG 59 NA Rattus norvegicus 81 LOC360933 ENSRNOG00000029734 ENSRNOT00000048329 2 1 1 80 14 41406312 41406330 GCATACTCCATGTGCACTC 59 41406371 41407555 AGTCATCTTGAAGATGGATCAG 58 NA Rattus norvegicus 81 Ctdnep1 ENSRNOG00000017352 ENSRNOT00000023379 2 1 1 80 10 56594648 56598225 TTAGAAGTGGTAAGCCAGTG 57 56598268 56598286 TTTATCTGCCACAGCAGAG 58 NA Rattus norvegicus 81 F2rl3 ENSRNOG00000048186 ENSRNOT00000072664 3 1 1 68 16 18819728 18819747 GCATCTACGACGATGTAGAG 58 18819379 18819398 TAAGTTCTACTGTGGGACGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC102551105 ENSRNOG00000040057 ENSRNOT00000061598 2 1 1 81 11 29056215 29056272 CTATGGCTGTGGCTATGGT 59 29056317 29056335 GTAGAAGCCACAGGACCAG 60 NA Rattus norvegicus 81 Mmrn2 ENSRNOG00000051977 ENSRNOT00000084422 1 1 1 80 16 10743632 10743762 GACAGAATTTGAGTCTCTTGGC 60 10743803 10743821 CTGAAGTGTGCTTCCAGGA 60 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367,ENSRNOT00000072897,ENSRNOT00000064168,ENSRNOT00000074954,ENSRNOT00000073696,ENSRNOT00000072244 2 6 6 80 13 84490915 84491797 ACCATAGTTCACGATGCAG 58 84491836 84491859 GGTGGTGATGATACAGTAATAGAG 58 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386,ENSRNOT00000067384 2 2 2 80 1 239468633 239468651 AAGCGGATGTTCCTTTCTG 58 239468694 239471878 GAGAACGATTGACCTTGGAG 58 NA Rattus norvegicus 81 Cyyr1 ENSRNOG00000001544 ENSRNOT00000002109 2 1 1 93 11 25073379 25078388 TTATGCAGAGGATTGCCGT 60 25073304 25073322 GTAGGCGTAGTAGGAGCAG 59 NA Rattus norvegicus 81 Bpifa3 ENSRNOG00000013778 ENSRNOT00000018512 2 1 1 80 3 149607254 149610697 AGCGAGAATTATTGCACAGG 59 149610740 149610758 TTCAGACGGTCCAGAAGAC 59 NA Rattus norvegicus 81 LOC102547118 ENSRNOG00000039305 ENSRNOT00000060213 2 1 1 123 X 17252371 17252825 TCAGGTCCCAAGGTAAAGC 59 17252266 17252284 ATGGAGAAGGTTTCAGGCT 59 NA Rattus norvegicus 81 Sepsecs ENSRNOG00000049244 ENSRNOT00000070892 2 1 1 80 14 60663424 60666882 GTGCCTGATAGATTAGAAGAACTG 59 60666919 60666939 TAATCCGTAAGCGTTGTTGAC 59 NA Rattus norvegicus 81 Tnfaip8l3 ENSRNOG00000024230 ENSRNOT00000038830 1 1 1 60 8 58647823 58647842 TCAGATTCTGGAGAGCAGAG 59 58604102 58647800 TAAACACATGAGGACCTGC 58 NA DesignRelaxed Rattus norvegicus 81 AC098462.1 ENSRNOG00000054778 ENSRNOT00000079358 3 1 1 60 1 63246395 63246414 CCAGTGTCTCCATGATTGTC 58 63246437 63246455 CTGTGGATGTGTTGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 3 3 3 80 1 135836243 135836261 ACGTCTCCTTCCTCTTCCT 60 135834658 135836200 CACGTGCTGAATTGTTTCCA 60 NA Rattus norvegicus 81 Plekhm1 ENSRNOG00000028521 ENSRNOT00000037147 1 1 1 80 10 91486228 91486246 CACACTCATCAGAAGCCTC 58 91484595 91486187 GTCTGAGATAATGTGTTTGTGG 58 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 1 2 2 80 1 279649158 279649179 GGAAGAAGATATCAAGCTGGAG 58 279649217 279658852 TATTCCATTGACTTCATCTCCC 58 NA Rattus norvegicus 81 Nras ENSRNOG00000023079 ENSRNOT00000039572 1 1 1 80 2 205555367 205558604 ATATTAACCTCTACAGGGAGCA 58 205558645 205558663 CACACTTGTTCCCTACCAG 58 NA Rattus norvegicus 81 Zfp870 ENSRNOG00000030416 ENSRNOT00000042638 1 1 1 80 7 15163787 15163806 GATCCATCCCAGAAGAAGCT 59 15163537 15163748 GCTCAACTTGTTTCCTATAGAGG 59 NA Rattus norvegicus 81 Triml1 ENSRNOG00000014502 ENSRNOT00000019474 1 1 1 80 16 52172133 52172151 CGGATCGAGTCCATCTGTC 60 52173896 52174092 CAGGGACTCATACCGATCC 59 NA Rattus norvegicus 81 Iqcf5 ENSRNOG00000013164 ENSRNOT00000017570 3 1 1 150 8 115213529 115213547 GGTGATGGGAACATCTAGC 58 115214501 115214519 GAATGATCCACGCGTTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Aloxe3 ENSRNOG00000007454 ENSRNOT00000010141 3 1 1 80 10 55713962 55713980 TCTGTGGTTCACTTTCCCT 59 55714023 55715243 GATGGTTCTTGCTGTTCCTG 59 NA Rattus norvegicus 81 Entpd8 ENSRNOG00000009239 ENSRNOT00000012289 2 1 1 81 3 2292871 2298829 CTGGAGACTGGTGGAAGAC 59 2298873 2298892 CACGAGGATGTATAGGCCTG 60 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550,ENSRNOT00000078720 2 2 2 80 8 116376527 116391048 GCTTCTGTTAGGTGCTGGA 60 116376234 116376252 TCTGAGTAGCCATCCTCGT 60 NA Rattus norvegicus 81 LOC100361655 ENSRNOG00000003266 ENSRNOT00000004356 1 1 1 80 10 91283449 91283467 CTTCGCAATGTGGGTATCC 59 91282850 91283408 GATTCCATCACCATCTAAGTCG 59 NA Rattus norvegicus 81 LOC100361655 ENSRNOG00000003266 ENSRNOT00000004356 2 1 1 80 10 91284958 91285101 GGGTCTCAAAGTTCGACCA 60 91283519 91283541 CAGTTTGAAGATATCCTGGAAGG 59 NA Rattus norvegicus 81 LOC685081 ENSRNOG00000042660 ENSRNOT00000040498 1 1 1 80 8 127909877 127910080 CATCCCAGGAGATCTTCCC 59 127909815 127909833 GAAATGGTGAAGGCAGCAG 60 NA Rattus norvegicus 81 LOC100910721 ENSRNOG00000061282 ENSRNOT00000074845 1 1 1 60 19 9436566 9436584 CCACAAGAAGATCCTGGAG 57 9436608 9436626 TTTGCCCTTCTCCTTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hexb ENSRNOG00000025274 ENSRNOT00000048554 3 1 1 80 2 27997306 27997328 CTACTTGTACAAGAACCAGTAGC 59 27995278 27997270 GCTAAAGGTCTCCAAATTACCTC 59 NA Rattus norvegicus 81 LOC689081 ENSRNOG00000005178 ENSRNOT00000006885 1 1 1 83 3 143189879 143189897 CTGAGGCTGACAAGAACCA 60 143188938 143189837 GATGAGAACATATTCCAGTTCAGG 59 NA Rattus norvegicus 81 Rfxap ENSRNOG00000056028 ENSRNOT00000092028 2 1 1 87 2 144005310 144007078 AAACTGGAGGAAAGCACAG 58 144005241 144005260 ATAGAGTAGGTCTTGCAGGG 58 NA Rattus norvegicus 81 Crhbp ENSRNOG00000017890 ENSRNOT00000024191 1 1 1 80 2 25152314 25152332 AGGAGTTCATCACCATCCA 58 25150845 25152273 TCCAACCATCAAATACCTTCAG 59 NA Rattus norvegicus 81 Krtap2-4 ENSRNOG00000060847 ENSRNOT00000086873 3 1 1 138 10 87535401 87535419 GATCCTTCTCCTCCCAGAG 58 87535281 87535300 CAGATGGGCCTAGTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 3 1 1 64 9 97355984 97365588 AGGTCACTTGGTTGCTCTC 60 97365616 97365634 TCCCAGGTTCCACATAGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390,ENSRNOT00000080945 3 2 2 80 X 156919283 156919439 CGGAATGTCTATAGAGAAGGTG 58 156919480 156919498 GGTTGCACATTACTCAGGA 58 NA Rattus norvegicus 81 Hamp ENSRNOG00000021029 ENSRNOT00000028545 1 1 1 92 1 89369919 89369937 CTAAGCACTCGGATCCAGG 60 89368348 89369863 AGTCTGTCTCGTCTGTTGC 60 NA Rattus norvegicus 81 Galm ENSRNOG00000007023 ENSRNOT00000009221 2 1 1 80 6 2809221 2815927 AGTTGGAAGGTTACCTCCAG 59 2815970 2815988 ACCTTCCTTTGGCAATTCG 59 NA Rattus norvegicus 81 Atxn1l ENSRNOG00000038766 ENSRNOT00000059225 2 1 1 60 19 41932763 41932781 GCAGTTTATTGGGTCTCCT 57 41932803 41932823 ATTGGGTAGGAAATTAGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcn1l1 ENSRNOG00000021871 ENSRNOT00000001517 1 1 1 80 12 46774254 46774810 TGTTATAGAGACTATCTCCAGCC 59 46774196 46774214 AAGCCTTTCACGATGTCCA 60 NA Rattus norvegicus 81 Zfp212 ENSRNOG00000006711 ENSRNOT00000009054 1 1 1 100 4 77598713 77598731 GAACAGGAGTGGGAGAACC 60 77598795 77600596 TGGCCAAGGACCTTTAGAG 59 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 3 2 2 80 8 85459736 85459755 AGCAATTCAGCTCCTGAGAG 60 85459797 85461298 TAAGGGTATCGAAGTGCCTG 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928,ENSRNOT00000084470 1 2 2 80 9 40983552 40983570 GGAAGTGTGAACGCTACTG 59 40983614 40984959 CTGTCTCCTTTGTCAGGGT 59 NA Rattus norvegicus 81 Ptgs1 ENSRNOG00000007415 ENSRNOT00000010218 2 1 1 80 3 15567610 15567629 CGTGAGCTACTATACTCGCA 59 15567671 15570116 AACTGCTTCTTCCCTTTGGT 60 NA Rattus norvegicus 81 AC118490.1 ENSRNOG00000010101 ENSRNOT00000013395 1 1 1 83 3 75414689 75414712 GCTTGGCCATTCTGTATAAGAG 59 75414756 75414774 TAGCTCTGTCACAGTCTCG 59 NA Rattus norvegicus 81 Minpp1 ENSRNOG00000011287 ENSRNOT00000015017 1 1 1 80 1 251052330 251052349 TTTGACCTGGCAATTCAAGG 59 251052389 251056668 TAAGTATTCCAGAACCTTCGCA 60 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 1 2 2 80 8 116514151 116514258 GCTATACACAGTACACTCAATACTC 59 116514095 116514113 ATGCATCAGACTCCAGTCC 59 NA Rattus norvegicus 81 Rab17 ENSRNOG00000052979 ENSRNOT00000079446 3 1 1 80 9 98126154 98126176 AAGCTGGTTCTGCTTAGCA 60 98126091 98126109 CAAGACGTTGCTGAAGTCC 59 NA Rattus norvegicus 81 Gpr161 ENSRNOG00000003073 ENSRNOT00000004104 1 1 1 80 13 83555292 83555310 CTCTGCCCTTCTCTACCTG 59 83555354 83559931 ACAGCGTAATAGCGATCGA 59 NA Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 1 2 2 81 9 41007335 41007353 TACAAGCCCTCACAAACAC 58 41007398 41008031 TGCCACAGATTTCCTTCTG 58 NA Rattus norvegicus 81 LOC688462 ENSRNOG00000029317 ENSRNOT00000051194 1 1 1 60 19 34617059 34617080 AAGAAGAGGAAGCATAAGAGGA 59 34617096 34617119 CCACCTTATAGTATTTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd7 ENSRNOG00000016883 ENSRNOT00000064510 3 1 1 81 1 263483915 263483935 TACTGCACAGAGGATGTACTG 59 263483978 263486702 TGCCACAGTAATCCTGAGC 60 NA Rattus norvegicus 81 Arf2 ENSRNOG00000004807 ENSRNOT00000006483 3 1 1 80 10 92025890 92036439 ACACTCAAGGTCTGATATTCGT 59 92036479 92036498 GCATTCTGGTCAGTTCTTCC 59 NA Rattus norvegicus 81 S100z ENSRNOG00000017998 ENSRNOT00000024202 1 1 1 80 2 25188937 25190372 CTCACAGAATTCCTCACATGTC 59 25188878 25188896 GTTGTCCTTGTTAGCGTCC 59 NA Rattus norvegicus 81 Tmem87b ENSRNOG00000017443 ENSRNOT00000023569 1 1 1 80 3 121371986 121375125 GTTATGGCATTGTAAAGCCG 58 121375165 121375186 CTGCAAAGATCAAGTAAAGCAG 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000024036 3 1 2 81 2 209444639 209444658 ATACGTTCCTCTGTTGATGC 58 209444702 209445891 TCTCATACTGGGTCTGTGG 58 NA Rattus norvegicus 81 Chchd5 ENSRNOG00000018491 ENSRNOT00000024942 3 1 1 90 3 121660595 121660613 TTAAGATGAGCATCGCTCG 58 121660748 121660766 TCCTCAAAGGCTTCAAACG 58 NA DesignNoJunction Rattus norvegicus 81 Arhgdib ENSRNOG00000005809 ENSRNOT00000007779 3 1 1 80 4 170914566 170917225 GATGAAAGTGGATAAAGCTACG 57 170914507 170914526 TCTACTGGAGTGAGGAACTC 58 NA Rattus norvegicus 81 Ccl6 ENSRNOG00000030021 ENSRNOT00000045867 3 1 1 81 10 70802729 70802747 AGACATTCCAAGACTGCCA 59 70799021 70802687 TTACCGTATCTTGTATGAGCCC 60 NA Rattus norvegicus 81 Gart ENSRNOG00000028292 ENSRNOT00000032162 3 1 1 80 11 31793881 31795017 GAGATTACAGGGTTTCCTGAG 58 31793821 31793841 CACTTTGGCATCTTTAAGAGC 58 NA Rattus norvegicus 81 Krt23 ENSRNOG00000011907 ENSRNOT00000016657 1 1 1 80 10 87397218 87397239 AAAGTGATATCCATGAGCTGAG 58 87394534 87397177 AAGCGGATTTCCTGTTGTG 59 NA Rattus norvegicus 81 Oraov1 ENSRNOG00000020903 ENSRNOT00000028374 1 1 1 80 1 218078588 218080411 AAAGAAAGCAGGAAGATGAAGG 59 218080448 218080470 CTCATAAGTGGGATCATCATAGG 58 NA Rattus norvegicus 81 Ankrd39 ENSRNOG00000023995 ENSRNOT00000021685 3 1 1 86 9 43120179 43122777 GTCTACATAAGGCTGCCGA 59 43120111 43120129 GATCCCGGACAGTCTTCAG 60 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 2 2 2 80 1 205911981 205922918 CATTTACACAGGCTACGCA 58 205922960 205922980 GTGACTTTCAGTCGAAATCTG 57 NA Rattus norvegicus 81 Krt36 ENSRNOG00000031805 ENSRNOT00000047580 3 1 1 80 10 88017597 88017616 GGAGATCATTGAGCTGAGAC 58 88017380 88017555 TCCAGAGAATTCCTCATGCT 59 NA Rattus norvegicus 81 Gls2 ENSRNOG00000031612 ENSRNOT00000018737 1 1 1 80 7 2619651 2619669 TTCCACAACTACGACAACC 58 2619713 2619904 GGTCTTGTTCCGAACTTCC 59 NA Rattus norvegicus 81 Setmar ENSRNOG00000006806 ENSRNOT00000008892 1 1 1 80 4 140092549 140103135 CCTAAACCTTTCCAGTATACTCC 58 140103174 140103193 ACCAGGGAAGGTTATTTGTG 58 NA Rattus norvegicus 81 Rbl2 ENSRNOG00000012153 ENSRNOT00000017361 3 1 1 80 19 17309133 17309153 AAAGAAGACAAGTCCTTCCAG 58 17307919 17309092 GACACTTCTGTATACCTGGC 58 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 3 2 2 80 2 87004039 87004058 TAACATTCCTGGAGCAAGGA 59 87004101 87009831 TGAGAGCTATTCCTGGGTG 59 NA Rattus norvegicus 81 Il7 ENSRNOG00000011973 ENSRNOT00000016091 1 1 1 91 2 96471262 96472306 GATGATACAAAGGAAGCTGCT 59 96472357 96472377 TGGTCATTGAATTCCTCACTG 58 NA Rattus norvegicus 81 Mag ENSRNOG00000021023 ENSRNOT00000028544,ENSRNOT00000044532 3 2 2 82 1 89353348 89354508 CGTCATGTATGCACCTTGG 59 89353284 89353302 TGGAACACAGGATGGAGAC 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000011422 ENSRNOT00000015180 1 1 1 60 19 49496116 49496134 CTCAGCCAACTTGATACCC 58 49496158 49496176 ACACGATGACACAGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362987 ENSRNOG00000021159 ENSRNOT00000028733 1 1 1 60 9 10737718 10737739 ACTTTATGGATGTGAAATGCCC 59 10737679 10737698 TGTGTATGGCTAAAGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spon2 ENSRNOG00000006033 ENSRNOT00000008262 1 1 1 90 14 82820546 82821149 TGACTGAGATAACCGCCTC 59 82821203 82821221 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 LOC691311 ENSRNOG00000021364 ENSRNOT00000034129 3 1 1 80 12 47504261 47504957 CAGTGACGTTTCCAACAGG 59 47504199 47504217 TTTCCGACAGACTCTTCGT 59 NA Rattus norvegicus 81 Kcnc4 ENSRNOG00000060988 ENSRNOT00000086420 2 1 1 88 2 210227736 210227755 CAGAAACAAGAAGGCAGCTG 60 210221533 210227685 CAACACTGCCTTCTTTCCG 60 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000074523 1 1 2 122 10 58862604 58862622 ACTTCACTCTCCATGAGGC 59 58862708 58868881 AACACTGTTTCTGCTGGTG 59 NA Rattus norvegicus 81 Gpn2 ENSRNOG00000007083 ENSRNOT00000009275 1 1 1 103 5 151810352 151812113 ACATCCAGGACAAGGACAG 59 151812180 151812198 CATCAGGGCTTCCAGACTC 60 NA Rattus norvegicus 81 Gpn2 ENSRNOG00000007083 ENSRNOT00000009275 2 1 1 104 5 151810351 151812113 AACATCCAGGACAAGGACAG 60 151812180 151812198 CATCAGGGCTTCCAGACTC 60 NA Rattus norvegicus 81 Ppox ENSRNOG00000003567 ENSRNOT00000004896 3 1 1 80 13 89653494 89653513 TGCGATCTTTGAACTTGGAC 59 89653297 89653451 AGTTCAGAAACCAGGAGCA 59 NA Rattus norvegicus 81 Wiz ENSRNOG00000006217 ENSRNOT00000008303 2 1 1 80 7 14400949 14400967 GATCTTCACACTACCTGCC 58 14388443 14400905 AGTTAGCCACAGAAATGCC 58 NA Rattus norvegicus 81 Ntm ENSRNOG00000023720 ENSRNOT00000035454 3 1 1 80 8 30154107 30221152 CACCTCATTGTACAAGTATCTCC 59 30154049 30154067 GAGGCTGATGTTGTTCCCT 60 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177,ENSRNOT00000047444 1 2 2 80 X 20435764 20435783 GCTGATACTAGGGCTTTGAG 58 20435825 20436669 AGGAACTGTAATCACCTGGA 58 NA Rattus norvegicus 81 Bbs7 ENSRNOG00000015816 ENSRNOT00000021453 2 1 1 80 2 123315333 123315352 CTGTGGAAAGGTTATCCCGT 60 123313149 123315293 TCACATCAGATCCCTGTAAGAC 59 NA Rattus norvegicus 81 Usp21 ENSRNOG00000038347 ENSRNOT00000058390 2 1 1 80 13 89655468 89655700 TCTACAATGACTCCCGTGTC 59 89655407 89655426 TCAATTGGTAGAACAGCACG 59 NA Rattus norvegicus 81 Slc43a1 ENSRNOG00000008243 ENSRNOT00000011006 1 1 1 80 3 72257776 72257794 CGGGTCATCTTCTACATGG 57 72257837 72257968 CTCATTCGTCTCACATTCCT 58 NA Rattus norvegicus 81 Mov10 ENSRNOG00000012946 ENSRNOT00000018061 2 1 1 80 2 207279531 207280348 CATCAAAGACTTGAAGGTGGG 59 207279471 207279490 CTTCGGACGGTAGAGATGAG 60 NA Rattus norvegicus 81 LOC100912937 ENSRNOG00000037684 ENSRNOT00000029656 2 1 1 80 2 102419070 102419983 TCTACACAAATTGCTCAGAGTC 59 102420023 102420042 AAGTCACGGTAAGAAAGCTC 58 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000049901 ENSRNOT00000071299 1 1 1 82 3 73328371 73328390 CCACCACTCATTAAGCTGTC 59 73328432 73328492 CTGGAAAGATTTAAGCTTGCTG 58 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 2 3 3 80 8 22427972 22427991 TGTCCTTGACCATCCATCTG 60 22428033 22429336 TGACTGATAGCGTTTCTCCA 59 NA Rattus norvegicus 81 Plxnb3 ENSRNOG00000061731 ENSRNOT00000080088 3 1 1 80 X 157019077 157019278 CTCATGTTACGCAGGACAG 58 157019015 157019034 CTTCAAGAAGGCGTAGAGAC 58 NA Rattus norvegicus 81 Shroom4 ENSRNOG00000002959 ENSRNOT00000003971 2 1 1 80 X 16763620 16765857 AACACAAGTGACGTGAGTG 58 16763558 16763576 CATGCTGCCAATAGAGCTG 59 NA Rattus norvegicus 81 Mecom ENSRNOG00000012645 ENSRNOT00000068381 2 1 1 80 2 117402375 117402395 ATCCCTGAGGATGACTATGAG 58 117401486 117402336 GTCTTCCTCTTTATACCTCACG 58 NA Rattus norvegicus 81 Phf6 ENSRNOG00000002276 ENSRNOT00000003091 3 1 1 80 X 158735115 158735136 TGATAATGAGAGTCTTGGTGGA 59 158721182 158735076 AGAGAACACATCAGCTTTGTG 59 NA Rattus norvegicus 81 Efcab3 ENSRNOG00000042255 ENSRNOT00000008019 1 1 1 80 10 93313082 93313103 AACTGGGAATGAATCTAAACGC 59 93313141 93316779 AGTTGATCTTACCATCCCTGTC 60 NA Rattus norvegicus 81 Dnajb3 ENSRNOG00000023172 ENSRNOT00000025300 2 1 1 60 9 95290234 95290254 AATCACCACCAAGAGAATCGT 60 95290194 95290213 TCCATCTTCTTCCACTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879,ENSRNOT00000028277 2 2 2 81 10 89994099 89994117 ATAGACCTTGCAGTGCCTC 60 89994162 89994657 ATGACAGTGACTGGCTGAG 59 NA Rattus norvegicus 81 LOC102551267 ENSRNOG00000049311 ENSRNOT00000071814 2 1 1 60 9 18001206 18001224 GGAACCATACCCAGACCTC 59 18001246 18001266 CTCCTTCAATTTGAGTCTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055875.1 ENSRNOG00000050603 ENSRNOT00000044642 3 1 1 91 7 14643940 14643961 GGTTAGAATAGTTGTGGAACCT 58 14644013 14644225 GTTGTGGCCATTCATTCAC 58 NA Rattus norvegicus 81 RGD1561875 ENSRNOG00000047992 ENSRNOT00000050291 2 1 1 60 2 235950837 235950857 TTGTGAGGACTAATGGAAAGG 58 235950797 235950817 GCCATGAATTCGTATGGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr26 ENSRNOG00000047057 ENSRNOT00000075540 2 1 1 80 1 203971834 203978147 CATCCATCCCAGTGTGAGG 60 203978190 203978209 AAGGTGCTGATCTTCTTGGT 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 3 4 4 80 3 152573080 152573098 GTGAGCACCTTAACCTCCT 59 152573142 152573684 GGTCCAGCCAATTCTTCTG 59 NA Rattus norvegicus 81 Abcd1 ENSRNOG00000056524 ENSRNOT00000084088 3 1 1 80 X 157082833 157090971 AGAGTCAGACTCAGAAGCC 58 157082771 157082789 AAGGCTTCTGTACGTTCAC 58 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000012017 1 1 2 164 7 26646836 26750203 TACAATCCCATCCAGCTGG 59 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA Rattus norvegicus 81 Ahdc1 ENSRNOG00000042855 ENSRNOT00000067939 2 1 1 80 5 151266403 151266421 ATTTACCGTCACCTCCCTG 59 151266464 151276533 ATTGGTCTTCTGAAAGCCAG 58 NA InUTR Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000004347 2 1 2 83 13 89544803 89565625 GATGAGCGAGCTTAACACC 59 89543633 89543651 TTAATGCTGCCAGGTTTCC 58 NA InUTR Rattus norvegicus 81 RGD1566136 ENSRNOG00000039203 ENSRNOT00000060001 2 1 1 60 X 113227832 113227850 AGCAGGTGGTAAACATCCC 60 113227790 113227810 AAGTCAATGTGCTTGTGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566136 ENSRNOG00000039203 ENSRNOT00000060001 3 1 1 60 X 113227808 113227829 CTTTCATTGTTTGTCTGGACTC 58 113227769 113227787 CCATAAGGAGAACGGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 2 2 2 80 1 68446244 68446264 CCTGGTTGCTTTCATTGTAGG 60 68446302 68450526 GGTACAGCATATACAGAAACCAG 59 NA Rattus norvegicus 81 Pmel ENSRNOG00000023085 ENSRNOT00000049972 1 1 1 80 7 3133913 3138246 TCTATAGAAGGATCCAGGAATCAG 59 3138283 3138303 GTACAGCTGCTTATTCCAGAC 59 NA Rattus norvegicus 81 Tuba1c ENSRNOG00000021438 ENSRNOT00000033450 3 1 1 82 7 140719970 140719989 CTTCTTCAGTGAGACAGGAG 57 140720031 140720183 GAACTTCATCAATAACTGTGGG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 2 2 3 82 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952706 87953550 CAGTCTGGTACTTGGTCCT 58 NA Rattus norvegicus 81 AABR07042359.1 ENSRNOG00000051885 ENSRNOT00000089027 1 1 1 60 X 153491563 153491581 TAAAGTATGCCTGGGTCCT 58 153491521 153491540 TCAATAGTGATACCACGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631,ENSRNOT00000090232 2 2 2 80 5 156484170 156484188 AGATGGGCAAACAGAGGAG 59 156484232 156506463 GTGGTAGCTGTTTGCACTG 60 NA Rattus norvegicus 81 Krt31 ENSRNOG00000030344 ENSRNOT00000018176 3 1 1 84 10 87962272 87962290 CAAATCTGAGAACGCCAGG 59 87961915 87962226 CTCTGTCTCATACTTGGTCCT 59 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000064840,ENSRNOT00000065181,ENSRNOT00000087723 2 3 3 80 10 59544439 59545284 TACAATGAGGCCAAGGGTG 60 59545326 59545346 GTTCATCTTCTCTACCAGGCA 60 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000078343,ENSRNOT00000067996 3 2 2 80 8 96514705 96514725 ACCTGAACATACAACTGTCCT 59 96513799 96514667 ACTCTTCTATGATCCACCTTCAC 60 NA Rattus norvegicus 81 Dusp18 ENSRNOG00000024945 ENSRNOT00000005516 2 1 1 80 14 84153366 84153384 TGGTTAACTCTCCCATGGG 59 84153427 84153549 CATCTGGTGTACTCAGTGGA 59 NA Rattus norvegicus 81 Actl9 ENSRNOG00000049571 ENSRNOT00000075258 3 1 1 60 7 18311816 18311836 AACAGGAATCTTTCAGTGTGG 59 18311857 18311876 ACTGGAAAGCATGTAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 3 2 2 80 2 153871339 153879736 GCAATTTCAGGATCATTGGG 58 153879778 153879797 TCATGTATGAGTTCTTGCGG 58 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 3 2 2 99 3 166985499 166987008 CCTTGAAGGAAAGAGGCCT 59 166985418 166985438 TGGTCGATAATGCGTATTTCC 59 NA Rattus norvegicus 81 Cgnl1 ENSRNOG00000054080 ENSRNOT00000083220 1 1 1 80 8 78132860 78132879 TACTTCAAGAGAAAGCTGCC 58 78132037 78132820 GGCTCTTTAAGTCTTTGTTCTG 58 NA Rattus norvegicus 81 Cacnb4 ENSRNOG00000007666 ENSRNOT00000059430 3 1 1 80 3 37990030 37990049 AGTCTGGGAGAAATGGTGTC 60 37988348 37988581 GTGCTCTGTCACTTTCTGC 59 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607,ENSRNOT00000064140 1 2 2 80 8 118262738 118262759 GGAGAAACCAATTGATTTGCAG 59 118262799 118264534 GCTCCTTTACTCTTTGCCAG 59 NA Rattus norvegicus 81 Sage1 ENSRNOG00000048059 ENSRNOT00000073396 2 1 1 103 X 158925581 158925599 AAGGAGAAGCCATGAGTCC 59 158923908 158925515 GACAATAGCACCTTCTCCCT 59 NA Rattus norvegicus 81 Tas2r119 ENSRNOG00000011963 ENSRNOT00000015904 2 1 1 60 2 85305785 85305806 CATCTTTACTGTTGCTGTTCTG 58 85305825 85305845 CATCTGCCTGCTATAATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn11a ENSRNOG00000032884 ENSRNOT00000034025 1 1 1 80 8 128475170 128475189 TACCAAATCGTGAAGCACAG 59 128471318 128475128 TTCAAATATCAGCGCTCCAC 59 NA Rattus norvegicus 81 Ppp1r32 ENSRNOG00000020620 ENSRNOT00000028003 2 1 1 80 1 226522476 226522808 CAAACCATCCAGATCTCTTGC 59 226522416 226522437 GATTCTTGGTAGACTCTTCCGT 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305,ENSRNOT00000037662 1 2 2 80 8 118412871 118412893 GTAAAGTGGAGTCCATATTCCTG 59 118412930 118414562 GCCTGGATATGTCTACATTCTG 59 NA Rattus norvegicus 81 Npas2 ENSRNOG00000013408 ENSRNOT00000059571 3 1 1 80 9 46045528 46045548 ACTACTACATCACCTACCACC 58 46045590 46048033 CATCTGCGTAACTGACCAC 59 NA Rattus norvegicus 81 Syt13 ENSRNOG00000008000 ENSRNOT00000011459 1 1 1 86 3 81842222 81844892 GACTAGCCTGGAAGCTGTC 60 81844942 81844960 ACAGAGCCTGTCTTGACAG 59 NA Rattus norvegicus 81 Trim59 ENSRNOG00000010515 ENSRNOT00000013987 3 1 1 84 2 165632552 165640658 TAACAGACCAGGAAATGCAC 58 165632487 165632505 GGTAGTACACGAGGATCGT 58 NA InUTR Rattus norvegicus 81 Cmtm8 ENSRNOG00000011201 ENSRNOT00000015188 1 1 1 92 8 122849839 122849857 TTCTCAGCTGCCATAGTGG 60 122848850 122849783 GAAGGCAAAGAACGAGGAG 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000047095 ENSRNOT00000074170 2 1 1 60 X 158569341 158569361 TCTGAGATTCACTATGCTTCC 57 158569383 158569401 CACAGGACACAGGAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crybb2 ENSRNOG00000050023 ENSRNOT00000072683 2 1 1 81 12 49584801 49585807 GACCCATCAAAGTGGACAG 58 49585851 49585870 ACAATCTCCATCTTCTTGCC 58 NA Rattus norvegicus 81 Ankrd37 ENSRNOG00000031335 ENSRNOT00000039909 2 1 1 135 16 49463463 49464338 AACCAACAGGATGTGTTGG 58 49465023 49465041 GATCTTCAGCTGTTTGCCC 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 2 3 3 81 20 49477824 49484446 AGCAAAGAGGTTATTGGTGTG 59 49477763 49477781 TGTAGACTTCGCCGATCAG 59 NA Rattus norvegicus 81 LOC100361422 ENSRNOG00000031956 ENSRNOT00000040168 1 1 1 60 X 97261788 97261807 CCACATTGACAACTCCATCC 59 97261747 97261765 AAGGGCATTACGATAGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr56 ENSRNOG00000051464 ENSRNOT00000087667 1 1 1 60 1 167944981 167945000 CTCCTACTGTTTCCACCCTG 60 167945022 167945041 ACTGTTGATCCTGGTGTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Poteg ENSRNOG00000012218 ENSRNOT00000016348 1 1 1 80 16 68830441 68830629 CCTCTCATAAAGTCTGTCCAG 58 68830381 68830399 GATAACGTTCGGATCAGCA 58 NA Rattus norvegicus 81 Rbpj ENSRNOG00000046327 ENSRNOT00000071929 3 1 1 80 14 59666861 59666880 CCTTAGCAAGCGGATAAAGG 59 59665079 59666818 GAGGCAATGCACAAGTCAG 60 NA Rattus norvegicus 81 Gstm6 ENSRNOG00000019017 ENSRNOT00000025746 1 1 1 80 2 210735719 210735738 AATGTTTGAACCCAAGTGCC 60 210734038 210735677 GAGATCTTCTTCAGGCCCTC 60 NA Rattus norvegicus 81 Vnn1 ENSRNOG00000016219 ENSRNOT00000021694 2 1 1 80 1 22619575 22620493 GAGGAGAATGACAGGAAGTG 58 22619514 22619532 TTTCCTTCCTGTGTCTTCC 57 NA Rattus norvegicus 81 Cyb561d1 ENSRNOG00000052232 ENSRNOT00000087329 3 1 1 104 2 210991306 210991324 TCTTTCTGACAGTGCTGTC 57 210990318 210990336 AGAGTAGGATCGCTTCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Dpy19l2 ENSRNOG00000045585 ENSRNOT00000071884 2 1 1 80 8 25806853 25809053 AGCTGTGAAGGATTGGGAG 59 25806791 25806810 GAACAAGCCCATCATTAGCC 59 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050505 ENSRNOT00000071864 3 1 1 60 2 155176020 155176038 CTGCCAACAAATCCCTCTC 59 155175978 155175999 GTCCATAGACACAGTCAATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef6 ENSRNOG00000000869 ENSRNOT00000001158 1 1 1 80 X 159783816 159796471 CGAGAAATTAAACCCAGTGAGAG 60 159783758 159783780 GTAATTCTTGGTAAGTGGAGCAG 60 NA Rattus norvegicus 81 P22k15 ENSRNOG00000030184 ENSRNOT00000050369 3 1 1 80 3 143778283 143778301 ACTGGCCATCTTTGTACTG 58 143614984 143778242 CTCGCAAACATTTCAATACCTC 58 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000057738 1 1 2 80 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561892 83562975 TGTCTCTTTGTCAGTGGTCTC 60 NA Rattus norvegicus 81 Polr1b ENSRNOG00000018349 ENSRNOT00000024882 2 1 1 80 3 121639675 121640668 TTGCACTTAAGGCACTTGTG 59 121640709 121640729 AGAAAGAGTCCTCCTCTTTGC 60 NA Rattus norvegicus 81 Gatc ENSRNOG00000001161 ENSRNOT00000001536 1 1 1 80 12 46995214 46995236 GCAGAAGAACTACTACAGAACTC 59 46995272 47038030 GTCTGGCAAAGGAATATTACCTG 60 NA Rattus norvegicus 81 St6galnac5 ENSRNOG00000049676 ENSRNOT00000072899 1 1 1 83 2 258052479 258052497 GAAGGCCTTCATGATCACG 59 258045946 258052433 GAGATCTTCCTGTCTTTGCC 58 NA Rattus norvegicus 81 Odf3l1 ENSRNOG00000027109 ENSRNOT00000038347 1 1 1 80 8 61518405 61519184 GCCACAATCAAAGGTCCAG 59 61518343 61518362 GAACATGGAGATGTCATGGG 59 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 3 2 2 80 8 61722496 61722515 GATATGGAGATGTACCCTGC 57 61722555 61725554 TGATGTAATCTGTCTGAGTGTG 58 NA Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000066758 2 1 2 116 10 87721758 87721776 GCTGCATTTCTAGCTGCTG 60 87695183 87695201 TAGAAATGCAACAGCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Psma5 ENSRNOG00000019868 ENSRNOT00000026928 3 1 1 80 2 211058339 211058358 AGAAGAGAATTACCTCGCCA 59 211058400 211059600 TGGCACAACCTATATGAGCA 59 NA Rattus norvegicus 81 Myo5c ENSRNOG00000008356 ENSRNOT00000011768 3 1 1 80 8 82227753 82228492 AGACGTTAGAAGCAGGCTC 60 82228536 82228554 AGTCCTTCGTAGGCAAACC 60 NA Rattus norvegicus 81 Bub3 ENSRNOG00000020643 ENSRNOT00000087065 2 1 2 81 1 203534574 203534593 ACATCGAGCAGATTTACCCA 59 203534637 203534794 AATCCATCAGAGCCTCCTG 59 NA Rattus norvegicus 81 LOC689657 ENSRNOG00000026175 ENSRNOT00000037765,ENSRNOT00000060503 2 2 2 80 9 35289562 35289581 ACTGATCCCATTCCTGAAGG 59 35289624 35291119 CTCCTCTTCACCACCTCTG 59 NA Rattus norvegicus 81 Myrip ENSRNOG00000018797 ENSRNOT00000025460 3 1 1 80 8 129134848 129134867 GCAATTTCCTTCTACAAGGC 58 129134910 129137261 GAACAGGCTCCATCAAGTC 58 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 1 1 1 73 13 26768600 26768618 TGACTGAGTACCTGAACCG 59 26605775 26768563 TAGTTCCACAAAGGCATCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100362350 ENSRNOG00000002597 ENSRNOT00000003498 1 1 1 80 7 2419040 2419058 AGTTGCATTGTTTGGAGGA 58 2415754 2418996 CGAATCTCACGTCTTAGCA 57 NA Rattus norvegicus 81 Trpv4 ENSRNOG00000001195 ENSRNOT00000001586 1 1 1 80 12 47726495 47729164 AACAGCAAGATCGAGAACC 58 47729208 47729226 GAACTTACGCCACTTGTCC 59 NA Rattus norvegicus 81 LOC100361231 ENSRNOG00000029588 ENSRNOT00000042579 2 1 1 80 1 217725402 217725424 CCTCAAGCTCCTTGTCTATAGAG 60 217725463 217728099 TCGACTCTTCTTGGTCTTCC 59 NA Rattus norvegicus 81 LOC102546814 ENSRNOG00000046421 ENSRNOT00000073540 2 1 1 80 2 174213601 174215999 GGAGTATCATCTTTGCTTCCA 58 174216041 174216059 ACTACCTTGAATCTCGTGC 57 NA Rattus norvegicus 81 LOC102546814 ENSRNOG00000046421 ENSRNOT00000073540 3 1 1 80 2 174236894 174236912 CACCACTGGAAATCCTCAC 58 174236955 174242299 GCAAACACAAGAACACTTGC 59 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 2 1 1 131 14 3061547 3061565 CGAGTCTCAGCTTACCGAG 60 3061660 3063013 GACGCTGGAGATACAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 P3h4 ENSRNOG00000015787 ENSRNOT00000021322 1 1 1 80 10 88321345 88321363 CCAGACCTCTGAACTTCGG 60 88319671 88321302 GTCTCCTCCAGTTCCATCTC 59 NA Rattus norvegicus 81 Arhgap27 ENSRNOG00000028569 ENSRNOT00000038836 3 1 1 80 10 91426612 91426631 GCTGGTCCTGTCAAATTACC 59 91426365 91426569 CCTCCAACCTTACCCACTG 60 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805,ENSRNOT00000037559 2 2 2 80 20 54094597 54094616 AACCAATGGATTACGGACAG 58 54058972 54094555 TCCCAAGTTCCAATCTTCTC 57 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 3 2 2 104 1 101085491 101085512 GAATTTCCAGTACGACCATGAG 59 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381,ENSRNOT00000010180 1 2 2 80 7 3334511 3334530 CTGTCTCTTATCATGCTCGT 57 3334571 3334682 ACTAAACTCTGACTTCACCTG 57 NA Rattus norvegicus 81 Lrfn4 ENSRNOG00000019356 ENSRNOT00000026169 1 1 1 80 1 219850877 219851373 CCTCATCTACCGGATTGTACC 60 219850817 219850835 CAGAGGTCGTAGTCAGCAC 60 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 2 2 3 117 2 210782720 210782738 GACACTGGGTTACTGGGAC 60 210782033 210782371 GTCATAGTCGGGAGCATCC 60 NA Rattus norvegicus 81 Pla2g3 ENSRNOG00000025121 ENSRNOT00000029848 2 1 1 80 14 83726560 83726580 ACCCTTGCAGTATAATTACGG 58 83726622 83726881 TGTTGAAACCTGGCATCAC 59 NA Rattus norvegicus 81 Osgepl1 ENSRNOG00000004001 ENSRNOT00000005408 3 1 1 82 9 53090382 53091898 GACATGCTTGACAAGGTGG 59 53090318 53090338 TCTATAGCTTTCCCACCACTC 59 NA Rattus norvegicus 81 Cacng4 ENSRNOG00000003262 ENSRNOT00000004383 2 1 1 114 10 95956077 95956095 ATTCTGCTCCTGCTTGGAG 60 95954684 95956001 TGATATTACTGAGGCCTGCAG 60 NA Rattus norvegicus 81 RGD1310553 ENSRNOG00000016447 ENSRNOT00000022601 2 1 1 108 9 49903188 49905002 TGGAGCAGAAGAACATAGC 57 49905074 49905092 TTTGGCAAATCCCTCTGAG 58 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000087615 2 1 5 60 20 4806473 4806491 CGAGGTCAACATCAGTGAG 58 4806327 4806451 TGTTCAATCACTGTAGGAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000082233,ENSRNOT00000080174 1 3 5 82 20 4808254 4808273 TGAAACTGAAGGACAACGAG 58 4807035 4808210 CACAAAGATCACAACCTGGT 58 NA Rattus norvegicus 81 Plscr3 ENSRNOG00000027914 ENSRNOT00000031640 2 1 1 80 10 56454792 56454810 CTTCTGGCCTGGAATTCCT 59 56454937 56455057 AGCCTAGGAACGTTTCCAC 60 NA Rattus norvegicus 81 LOC367485 ENSRNOG00000048976 ENSRNOT00000075616 2 1 1 80 1 24904918 24905080 TTCAGTGAAAGGATCCCAGG 60 24905123 24905141 TGAGGATTGTCGTCAGCAG 60 NA Rattus norvegicus 81 AC110474.1 ENSRNOG00000036665 ENSRNOT00000054921 1 1 1 60 10 110438353 110438372 TGATCTTACTTACGCAGACC 57 110438395 110438413 ATCCTTCAGGCTCTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdpr ENSRNOG00000025895 ENSRNOT00000028907 1 1 1 81 9 55255650 55255668 AAGAGGCTGGAGAACAACC 60 55245690 55255607 GGATCTCACTTTCTTCCTGGA 59 NA Rattus norvegicus 81 Gdf11 ENSRNOG00000007610 ENSRNOT00000010035 2 1 1 75 7 3315394 3315412 GAGACGGTCATAAGCATGG 58 3310966 3310984 GGAAATGGCAACACAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Gdf11 ENSRNOG00000007610 ENSRNOT00000010035 3 1 1 76 7 3315394 3315412 GAGACGGTCATAAGCATGG 58 3310965 3310983 TGGAAATGGCAACACAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1088 ENSRNOG00000028146 ENSRNOT00000012907 1 1 1 60 7 14117524 14117543 ACCATCATCACCATCATCCA 59 14117483 14117501 CCAGGAAGCGGTACATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477,ENSRNOT00000014924 1 2 2 80 16 59242813 59242834 CTGAAATCTACCAGTACGTCCA 60 59242875 59244008 TAGTCCTCCAGGTCCTCAG 59 NA Rattus norvegicus 81 Inpp4a ENSRNOG00000017660 ENSRNOT00000024330 2 1 1 80 9 43962830 43962850 TCTCATCAATCAGATGACCCA 59 43962891 43963169 CCCAGCAAGTACATTGTTCC 59 NA Rattus norvegicus 81 RGD1560585 ENSRNOG00000060534 ENSRNOT00000078404 3 1 1 67 X 144001538 144001557 AAAGAAGTATGAAGCCCTGG 58 144001490 144001511 CGGTATAGTTTCTCATTTCACG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glipr1l1 ENSRNOG00000026634 ENSRNOT00000039475 1 1 1 80 7 54837648 54853784 CCATTATACACAGGTAGTCTGG 58 54837589 54837610 GAATATCCTGTGAGATGAGGAC 58 NA Rattus norvegicus 81 Spag7 ENSRNOG00000004246 ENSRNOT00000005653 1 1 1 80 10 57286296 57286314 CATCCAGGACAGTGGACAG 60 57286119 57286257 TCTACCACATCATGTAGTATGCTC 60 NA Rattus norvegicus 81 Nxpe2 ENSRNOG00000027847 ENSRNOT00000037353 1 1 1 80 8 60335942 60337805 TAAGAACAAGACCGAGAGCA 59 60335881 60335901 CCTCTCAAAGTATAGCCACTG 58 NA Rattus norvegicus 81 Usp27x ENSRNOG00000002844 ENSRNOT00000003800 1 1 1 60 X 15989265 15989283 GATGTCTTCGCTCTTTCGG 59 15989307 15989325 CTTGTAGGGCACATGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE3 ENSRNOG00000031607 ENSRNOT00000050099 2 1 1 96 20 4932633 4932651 ATTATTGGAGCTCTGGTGC 58 4932195 4932396 GAGCTGTCAACTAACCTGG 58 NA InUTR Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144,ENSRNOT00000080695 3 2 2 80 14 82275648 82275667 CAGAAGCTATTGGCATCGAC 59 82275506 82275606 CAGTGGCATCATCTTTCAGC 60 NA Rattus norvegicus 81 Hyal1 ENSRNOG00000015858 ENSRNOT00000021408 2 1 1 81 8 116334783 116334932 AGTACCAAGGAGTCATGCC 59 116334977 116334995 CTGCACTGGTTACGTTCAG 59 NA Rattus norvegicus 81 Axin2 ENSRNOG00000055010 ENSRNOT00000088599 1 1 1 80 10 97220686 97220704 ACGACAGCGAGTTATCCAG 60 97220747 97228749 AAGGAGGGATTCCATCTACG 59 NA Rattus norvegicus 81 Rbm15 ENSRNOG00000047499 ENSRNOT00000070994 1 1 1 61 2 210085902 210085923 ATCTGAAGAAGATTACCTGGTC 57 210081968 210081986 TTCATCCGATGTTCACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000067414 2 1 2 108 10 62036103 62036122 AGGGATTTGAATCTGGACCC 60 62106116 62106134 AACAGCAGCAATTCCACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 3 1 3 161 20 4789803 4789948 CTCTCACCTTGAGATGGGA 58 4696035 4789679 CTGTTCCTCCTGTGTTTCTC 58 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000004693 1 1 2 82 X 31759086 31761209 CTCCATGAAGGTCCACCTG 60 31759022 31759040 ATGGCTTGATGACATGTGC 59 NA Rattus norvegicus 81 Nme1 ENSRNOG00000002693 ENSRNOT00000003658 2 1 1 83 10 81660510 81660529 TACATTGACCTGAAGGACCG 60 81658237 81660464 CTCCCAGACCATAGCAACC 60 NA Rattus norvegicus 81 Vps13a ENSRNOG00000025539 ENSRNOT00000014800 2 1 1 80 1 235721392 235724367 ACTGAAGATGACTCAGAGGA 58 235721331 235721351 AACTCTACATGACACTTGAGG 58 NA Rattus norvegicus 81 Ss18l2 ENSRNOG00000047853 ENSRNOT00000073376 1 1 1 80 8 130350834 130350852 GAGAATGACCAGCTGATCC 58 130350896 130352777 CACATGCTGATACTGGACG 58 NA Rattus norvegicus 81 LOC100910813 ENSRNOG00000048571 ENSRNOT00000071722 3 1 1 80 9 44581148 44586335 ACTTATTGCTCTCATTGGCAC 59 44581088 44581106 AGACGAGAGTGCACATGAG 60 NA Rattus norvegicus 81 Myl3 ENSRNOG00000020955 ENSRNOT00000028458 2 1 1 80 8 119033874 119035105 AACAGGAAGAGCTCAACTCC 60 119035145 119035166 TGTCTTTGTTCTTGGAGATGTG 59 NA Rattus norvegicus 81 Mblac1 ENSRNOG00000001357 ENSRNOT00000001831 3 1 1 60 12 19336288 19336306 GGCACTCGGATCATATTGG 58 19336330 19336348 TGGGAAACTAACAGAGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gyltl1b ENSRNOG00000006353 ENSRNOT00000051258 3 1 1 80 3 81278401 81278549 TGACCTCAAAGTGATCCAC 57 81278339 81278360 TGTAGATCACGGAAGAATTCTG 58 NA Rattus norvegicus 81 Cryab ENSRNOG00000010524 ENSRNOT00000059127 1 1 1 80 8 55179064 55180111 CTCTCAGAGATGCGTATGG 57 55180154 55180173 GACTTTGAGTTCCTCTGGAG 58 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 3 2 2 81 8 23145984 23146003 TGACTTCATCATGTCCCTGG 60 23145734 23145940 AAAGGTCTCCTGGAACCTC 59 NA Rattus norvegicus 81 Sin3a ENSRNOG00000032254 ENSRNOT00000058685,ENSRNOT00000089557 1 2 2 80 8 61779257 61779281 CCACTTTCGTTAGTTCTAAGAAGAC 60 61779318 61781090 CCACATCAAGCTCAAATCGT 59 NA Rattus norvegicus 81 Rasl2-9 ENSRNOG00000032913 ENSRNOT00000050233 2 1 1 60 1 72272298 72272316 AAGGAGTATGTAGCCACCC 59 72272335 72272358 CTCTGTTGGTATGAAAGACTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nipal3 ENSRNOG00000037165 ENSRNOT00000025075 3 1 1 81 5 153816111 153816130 TCAGATCTACGACTCCTCCT 59 153814769 153816067 GAAGATCGAACCTGCTGTG 59 NA Rattus norvegicus 81 Lta ENSRNOG00000000838 ENSRNOT00000001111 1 1 1 144 20 4852802 4853183 AGCCTTATCTGGTTCTCCC 59 4853373 4853391 GAAGCTGAGAAGCGAACAC 59 NA InUTR Rattus norvegicus 81 LOC100909857 ENSRNOG00000015677 ENSRNOT00000021036 2 1 1 91 5 156721455 156734365 GGAGGATCTTCTCTGGGTG 59 156721382 156721400 TTCAGAGATGGCCTTCTGG 59 NA Rattus norvegicus 81 Vom2r12 ENSRNOG00000057050 ENSRNOT00000081724 1 1 2 80 1 64851912 64851933 CTTACAGGATTAAACTGGGCAC 59 64851973 64852631 AAGATGAGGGAACTGCTGAG 60 NA Rattus norvegicus 81 Olr143 ENSRNOG00000016964 ENSRNOT00000022759 2 1 1 60 1 169241380 169241401 TTATAGTGCCAAGACAAAGGAC 59 169241419 169241440 TTTGATACGGTGAAACATACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem25 ENSRNOG00000014218 ENSRNOT00000067558 3 1 1 82 8 49103635 49105019 ATGTGCAATTCAAACCAGAG 57 49103572 49103590 AAACAGGACAACCAGAAGG 58 NA Rattus norvegicus 81 Olr139 ENSRNOG00000048713 ENSRNOT00000040131 1 1 1 60 1 169183190 169183208 CCTCACTCTTACCACACTG 57 169183231 169183250 GATTTCCCGAATGTTGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpt1a ENSRNOG00000014254 ENSRNOT00000019652 2 1 1 80 1 218624677 218626082 TCCTGAAGGAGGTATTGTCTG 59 218626123 218626142 CAAAGTCAAAGAGCTCCACC 59 NA Rattus norvegicus 81 Cpt1a ENSRNOG00000014254 ENSRNOT00000019652 3 1 1 80 1 218624678 218626082 CCTGAAGGAGGTATTGTCTG 57 218626124 218626143 TCAAAGTCAAAGAGCTCCAC 58 NA Rattus norvegicus 81 Mir6329 ENSRNOG00000047361 ENSRNOT00000071369 2 1 1 60 8 56629647 56629667 GTGACTCAGCTATCTGAACAG 58 56629607 56629627 ACAATTTGCAGAGTGACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC107280.1 ENSRNOG00000031401 ENSRNOT00000048808 1 1 1 88 8 117478578 117478598 GGCTATGATGTTGAAGACCA 58 117478509 117478530 TCAGATAGCAGTCTCATTACAC 58 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 1 2 2 80 8 56592802 56592822 TAAACTGACCAAAGAGCAGTG 59 56592861 56593506 ATTGAATCTTCCCTTAGCATCC 58 NA Rattus norvegicus 81 Zbtb32 ENSRNOG00000042465 ENSRNOT00000063808 1 1 1 84 1 89044574 89044592 ATATGGCGCTCCTTTCTCC 60 89044303 89044526 CAAGGTCAGTGGGATCCTC 60 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 1 3 3 80 16 54174529 54174548 TGGAAACTTTGTCCAAAGCA 59 54174589 54183974 GTGTAGTCTCCTTGCATAGTC 58 NA Rattus norvegicus 81 Rcn2 ENSRNOG00000015780 ENSRNOT00000021817 1 1 1 80 8 60713397 60721065 TTAGGCAGCTCCATCTAAAGG 60 60721104 60721125 ACTCTTCAAGATTCAGACCAGG 60 NA Rattus norvegicus 81 Vom1r-ps55 ENSRNOG00000049720 ENSRNOT00000038706 2 1 1 67 1 66749031 66749051 ATCCTAGGCAATTCCTTTCTC 58 66749082 66749100 GTGGGTCTCACCATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1305420 ENSRNOG00000009492 ENSRNOT00000012602 3 1 1 81 5 61994988 61997976 GAGAAGGTGGAAGGTGGAG 59 61994925 61994945 TGTAGGGCTTTATGTCTAGCA 59 NA Rattus norvegicus 81 Hspa1b ENSRNOG00000050647 ENSRNOT00000081924 3 1 1 60 20 4879256 4879274 GAGAACCGGTCGTTCTACC 60 4879214 4879233 TCTCCTTCATCTTGGTCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ano10 ENSRNOG00000000219 ENSRNOT00000035371 3 1 1 80 8 130908180 130908199 ATCTTAGAGCCAGAGACGAG 59 130898720 130908139 ATCTCCTCATCAGTGACTTCC 59 NA Rattus norvegicus 81 Olr352 ENSRNOG00000054590 ENSRNOT00000087890 1 1 1 60 1 230011197 230011217 CTCTTCATCACCTTCTTCCTC 58 230011239 230011257 GGATCATTCCCAGGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha2 ENSRNOG00000009222 ENSRNOT00000012328 1 1 1 80 5 159866095 159866113 CGTGCTCAAGTTTACCACC 59 159866157 159866271 ACCTCTCCAAACTCTCCTG 58 NA Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 3 2 2 80 8 61811584 61811807 GGTAGAAATGGATGGGAACC 58 61811848 61811868 TCTTGCAGAAAGAAGTTCTGG 59 NA Rattus norvegicus 81 Dph5 ENSRNOG00000013719 ENSRNOT00000018367 1 1 1 84 2 218846040 218853821 GTTTACAGTTGTACAGGTTTGG 58 218853865 218853884 ACCTTGTCAAAGAAGCTCTC 58 NA Rattus norvegicus 81 Ncr1 ENSRNOG00000018458 ENSRNOT00000025080 1 1 1 80 1 73225926 73225947 TCTACACCTGCTTCTATCAGAG 59 73223546 73225887 CATACAGACCAGTTACCACCA 60 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 2 2 2 80 8 22800760 22800778 TCATATCAGCATGCTTGGC 58 22799852 22800719 TATAAGCCACTTTCAGTTCTCG 58 NA Rattus norvegicus 81 LOC100911807 ENSRNOG00000050492 ENSRNOT00000073395 3 1 1 80 8 118432284 118432305 ATTAAGGACAAAGCTTCAGAGC 59 118430856 118432245 CCTTTCCTAGGACTGACTTGG 60 NA Rattus norvegicus 81 AABR07071287.1 ENSRNOG00000031523 ENSRNOT00000048864 2 1 1 80 8 107711460 107711480 ATGAGAATCATTTGGGTGCAG 59 107711520 107714693 TTCCTGATGATGCTATGTCCC 60 NA Rattus norvegicus 81 Alg14 ENSRNOG00000011528 ENSRNOT00000015354 2 1 1 82 2 224886696 224886714 CTCCTCCGTGTTCACTACC 60 224886760 224930486 TACACAGCACCAAGTCTGG 60 NA Rattus norvegicus 81 Cdhr1 ENSRNOG00000013330 ENSRNOT00000018630 3 1 1 80 16 14333167 14334919 CGTTAACCTTCAAGCTCCTG 59 14333106 14333126 GAAGCTGGATCACAATGTCTG 59 NA Rattus norvegicus 81 AABR07069942.1 ENSRNOG00000049004 ENSRNOT00000072871 1 1 1 60 8 42793405 42793428 CATTCTTCTCACTATTGTCTCCTC 59 42793368 42793387 GCACAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbpl ENSRNOG00000000432 ENSRNOT00000000494 3 1 1 81 20 4411939 4411957 CAACACCGTACTCAATGCA 59 4411998 4412219 GTCAATTGTAGTTCAGACCTGAG 59 NA InUTR Rattus norvegicus 81 Olr1330 ENSRNOG00000052448 ENSRNOT00000084315 3 1 1 60 8 43796091 43796110 GGAAACCTACTCATTCTGCT 57 43796050 43796069 AATACATGGGAGTGTGAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 1 3 8 80 20 4482893 4482914 ACAAATTCTTCCTCTATGGCCT 60 4482955 4483252 CAGGAACTGGATCTGTGGT 59 NA Rattus norvegicus 81 Trim71 ENSRNOG00000030098 ENSRNOT00000047198 3 1 1 112 8 122556228 122556246 CAAGTGGAGATGAAGGCCA 60 122554456 122556153 ATCTTCTCCACCTTCCACAG 59 NA Rattus norvegicus 81 Usp53 ENSRNOG00000014660 ENSRNOT00000066581 2 1 1 80 2 227128580 227128598 TGCACTTTCTTCTCAACGA 57 227127118 227128538 TCTTCATCAACCACATCTCTG 58 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000087427,ENSRNOT00000005817 3 2 2 89 8 132173005 132173025 ATAGCTCTCATTTCCTTGCAC 59 132170413 132172954 GAAGGAGCTGCACTTTGTC 59 NA Rattus norvegicus 81 Akna ENSRNOG00000008005 ENSRNOT00000010516 3 1 1 80 5 79190235 79190676 ACCCAGACTGTCAAGTTCTG 60 79190174 79190194 GGATGCTCCTCAAATGTTCTG 59 NA Rattus norvegicus 81 Nbl1 ENSRNOG00000049402 ENSRNOT00000072299 2 1 1 80 5 157525865 157527734 CATGTGGGAGATTGTGACC 58 157525803 157525823 TGTACAATCTTCTCAACCAGC 58 NA Rattus norvegicus 81 Golga7 ENSRNOG00000017956 ENSRNOT00000030960 2 1 1 80 16 73564499 73564517 ATTCAGCGAGACTACAGCA 59 73564559 73570345 TCTATCAACCCTGTTCTCCAG 59 NA Rattus norvegicus 81 LOC100361018 ENSRNOG00000046494 ENSRNOT00000074387 1 1 1 60 20 29951945 29951963 TACTATCCAGCAGTGTCCT 57 29951987 29952005 AGTCCAGTCATAGTCACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361018 ENSRNOG00000046494 ENSRNOT00000074387 2 1 1 60 20 29951945 29951963 TACTATCCAGCAGTGTCCT 57 29951986 29952005 AGTCCAGTCATAGTCACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361018 ENSRNOG00000046494 ENSRNOT00000074387 3 1 1 60 20 29951945 29951964 TACTATCCAGCAGTGTCCTC 58 29951987 29952005 AGTCCAGTCATAGTCACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876,ENSRNOT00000021081 2 3 4 96 2 53300337 53300356 GACATGTTTCCTGGAAGTGG 59 53185920 53233349 CAGAGGAACTTTCCCTCAGG 60 NA Rattus norvegicus 81 LOC688390 ENSRNOG00000026080 ENSRNOT00000038842 3 1 1 72 20 47911370 47911388 TATGTGGAGGCCGAATGTC 60 47911424 47911442 AAAGCTTCCTGGCAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnks ENSRNOG00000011625 ENSRNOT00000015813 3 1 1 80 16 61062424 61062443 AGTCATCGGTAGACCAAGTG 59 61062483 61066523 TATTCTGGATATGCCTGTTCCC 60 NA Rattus norvegicus 81 Tmem210 ENSRNOG00000040275 ENSRNOT00000061987 2 1 1 74 3 2504746 2504926 TCATACCTGCTTCAGCTGG 60 2504964 2504982 CAATGAGGGCAATAAGGGC 59 NA DesignRelaxed Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365,ENSRNOT00000087718 1 2 2 80 20 47541955 47541975 AAGACAGCAACAACATCACAG 60 47542017 47543791 CAAACACTTCAGCCATCGT 59 NA Rattus norvegicus 81 LOC690478 ENSRNOG00000043302 ENSRNOT00000064565 3 1 1 61 20 11655997 11656016 AGTGACCTGAGCTACAACAG 60 11656038 11656058 GAGTCAGTACAAGAGTCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 3 2 2 83 3 71863419 71864032 AGGATCCAGTGAATGAGGT 58 71863354 71863374 CCACGTTATTTACAGTAGTGC 57 NA Rattus norvegicus 81 Ptafr ENSRNOG00000013231 ENSRNOT00000017687 3 1 1 89 5 150754064 150772426 CTCCTATAGGGACATACAACGT 59 150772476 150772494 TCAGAATCCACACGGAAGG 59 NA InUTR Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 1 2 2 80 3 161805480 161805498 CCATTGACACCATGTTCCA 58 161803063 161805437 AATGGAGACCTTCGAATACG 58 NA Rattus norvegicus 81 Pdik1l ENSRNOG00000016536 ENSRNOT00000022141 2 1 1 81 5 152499072 152503714 CCCTTTATTTACAGCTTGTAGAGAC 60 152499015 152499035 ACAAACCACAAATAGTAGGCG 59 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 2 2 2 81 16 74548732 74550599 ATGAACTGGGTCCTATCCC 58 74550644 74550662 CAATCCACCGGATACACAG 58 NA Rattus norvegicus 81 Atoh7 ENSRNOG00000000384 ENSRNOT00000000432 3 1 1 180 20 27083160 27083178 CCAAGTACGAGACACTGCA 60 27082998 27083016 AAGAACTTCTGCCCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp105 ENSRNOG00000032919 ENSRNOT00000040625 2 1 1 81 8 132002380 132002398 TGGGAACATCAAGAACTGG 57 132002443 132004685 TTTCTGACCCTTCTCCTCC 58 NA Rattus norvegicus 81 Olr1335 ENSRNOG00000059229 ENSRNOT00000081506 1 1 1 60 8 43853914 43853932 GACACCACTACTCAACCCT 59 43853872 43853890 TAGTGCCTTCTTCACCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500567 ENSRNOG00000026676 ENSRNOT00000030881 1 1 1 82 5 153976727 153976745 GCAGCATCAGAGGAATGTC 59 153976791 153977548 CTCCAGAGATCCCTCACAG 59 NA Rattus norvegicus 81 Olr1339 ENSRNOG00000059611 ENSRNOT00000081179 2 1 1 60 8 43919875 43919894 ACTTCTATTGTGATGTGCCA 57 43919834 43919854 TCTAAGACAAAGGTATCGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364116 ENSRNOG00000030426 ENSRNOT00000050041 1 1 1 60 20 8484528 8484546 GTGAAGGTTCCAAGACGTG 59 8484569 8484588 AAGTCAATGAGTCGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr873 ENSRNOG00000046516 ENSRNOT00000071833 2 1 1 60 8 20993890 20993909 TTTATGGAACAGCCTTGGGA 59 20993849 20993867 GTACTTCTGGGAGAACGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grhpr ENSRNOG00000012794 ENSRNOT00000051445 1 1 1 80 5 60534016 60534036 TCCAGAGATTTCTCTACACGG 59 60534076 60535058 GAGCAATAGGCACAAACTCTG 60 NA Rattus norvegicus 81 AABR07072805.1 ENSRNOG00000047265 ENSRNOT00000071389 1 1 1 60 20 999243 999261 AGTGCAGTTATTCATGGCT 57 999285 999305 TGATACCAAGATGAGTGTCAG 57 NA DesignNoJunction Rattus norvegicus 81 AABR07026236.1 ENSRNOG00000039287 ENSRNOT00000060162 3 1 1 82 16 68699653 68700274 GAGGAGAGGAAGAGTCAGAC 59 68699590 68699608 CAATGACTGATGGCTCTCG 58 NA Rattus norvegicus 81 Ckap2 ENSRNOG00000024650 ENSRNOT00000029266 3 1 1 80 16 74763683 74764309 CTGAACCTCATTAATAAGGGATGC 60 74764342 74764366 GGCATCTGGAATATTATGAATCAGG 60 NA Rattus norvegicus 81 Eif4ebp1 ENSRNOG00000012582 ENSRNOT00000016885 1 1 1 162 16 68956855 68956873 TGATGGAGTGTCGGAACTC 59 68955319 68956729 TGTGACTCTTCACCACCTG 59 NA Rattus norvegicus 81 Xkr5 ENSRNOG00000028636 ENSRNOT00000032368 1 1 1 80 16 75758040 75760977 TGGATTTCTGATTGGGTGTG 58 75761020 75761038 AAGTTCTCCTGGATGTCCG 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 2 2 3 114 3 80677319 80713739 GAAGACTCCCTGAGGAGGA 60 80713816 80718416 CAGGAGATAATCTCGCTGGG 60 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000084809 3 1 3 90 3 80677136 80677155 CAAATGCCTAACTCCGCAG 59 80677209 80677227 CCGGTCTCCTGGTTAAAGG 60 NA InUTR Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 3 2 2 80 16 81069517 81070300 GTCATCATGAAGTTTGTGTTGG 59 81070338 81070359 CACAATCCACTTGATGTACTGG 59 NA Rattus norvegicus 81 LOC102552669 ENSRNOG00000022257 ENSRNOT00000029077 2 1 1 60 5 154976434 154976452 GGTCAAACAGGAGAACAGC 59 154980283 154980301 CATGGTTGTTTCTGCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Spata2 ENSRNOG00000009207 ENSRNOT00000012604 1 1 1 80 3 164232596 164233229 CAGCATCAAGACCTACACG 58 164232534 164232553 TTTAGAATGGCTCGGATGTC 58 NA Rattus norvegicus 81 RGD1563348 ENSRNOG00000054563 ENSRNOT00000082857 2 1 1 81 3 72071322 72071459 ACAACAGTCGTGTTGAACTC 59 72071260 72071278 ACCATCTCTTGAGGCTCAG 59 NA Rattus norvegicus 81 Angpt2 ENSRNOG00000016696 ENSRNOT00000022774 2 1 1 80 16 76010279 76013915 GTCCAACTACAGGATTCACC 58 76013958 76013976 AAATCACTTCCTGGTTGGC 58 NA Rattus norvegicus 81 Pax7 ENSRNOG00000018739 ENSRNOT00000025488 1 1 1 80 5 158259433 158259451 ACTACCCGGACATCTACAC 58 158256100 158259389 TACTGAACCAGACCTGGAC 58 NA Rattus norvegicus 81 Igsf21 ENSRNOG00000049959 ENSRNOT00000074336 3 1 1 81 5 158504518 158505007 GATTTCAGAATGAGGTCTTCCC 59 158504458 158504476 AATTCAGCACTCCCATCCA 59 NA Rattus norvegicus 81 Zfp703 ENSRNOG00000014199 ENSRNOT00000019002 1 1 1 113 16 69241827 69241845 GGGTCCTGAAGATGCTGAG 60 69240768 69240786 AAGGACTCTTCTTGGCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp703 ENSRNOG00000014199 ENSRNOT00000019002 2 1 1 114 16 69241827 69241845 GGGTCCTGAAGATGCTGAG 60 69240767 69240785 AAAGGACTCTTCTTGGCGT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07072894.1 ENSRNOG00000055818 ENSRNOT00000085004 3 1 1 80 3 78263325 78263346 GTACCCACTATTGCTTGCA 58 78263263 78263281 ACCATACAGATTGCTCCAC 57 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 1 1 1 88 3 171302444 171302462 AGCCACTACAAGCTGTCAG 60 171296484 171302392 CATCCTTCCGAGGACAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Defb33 ENSRNOG00000038128 ENSRNOT00000058031 1 1 1 63 16 75581227 75581246 TCCTTGTATGTCTTGCTCAG 57 75578882 75578901 TCACACTGACGAAATTTCGT 58 NA DesignNoJunction Rattus norvegicus 81 Ppdpf ENSRNOG00000012722 ENSRNOT00000017319 1 1 1 111 3 176691481 176691571 ATGACTACTATCGGCGACG 59 176691776 176691794 GAGTCAGCTTTGGGAAGAC 58 NA Rattus norvegicus 81 Cir1 ENSRNOG00000018719 ENSRNOT00000064662 3 1 1 82 3 59996635 59997830 ATCCATCGCAGGACTATGTC 60 59996572 59996590 CTTCTGTTTGGTGGTGAGC 59 NA Rattus norvegicus 81 Kcns1 ENSRNOG00000013681 ENSRNOT00000018364 2 1 1 257 3 160559509 160559738 CTATAGCCCTGCAAGGGAG 59 160559270 160559288 CGATCGAAGTAGAACTCGC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Defb14 ENSRNOG00000032304 ENSRNOT00000048414 1 1 1 100 16 75648487 75648505 ATCTTGTTCTTGGTGCCTG 58 75647750 75647768 CAGTTGAGTATGGCACACC 59 NA DesignNoJunction Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 3 3 3 92 16 69883496 69884370 TTCCAAAGGATTGTTCGCC 59 69883422 69883440 CTCTAGGAAGGAGTCAGGC 59 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 1 2 2 80 3 65864531 65869283 ATTTAAGCCACCAAAGGTTACC 59 65869323 65869342 ATATCCAGGCAGATGACTCC 59 NA Rattus norvegicus 81 Lamp1 ENSRNOG00000019629 ENSRNOT00000026580 2 1 1 84 16 81691005 81691108 TTCCTGATGCCATAGAGCC 59 81690939 81690958 CACTTGTATGAGTTGCCGAC 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435,ENSRNOT00000084866 1 2 2 80 3 155325410 155326903 ACCTACAAAGTCCTGTTCCA 59 155326946 155326964 CTCCATCTCCCTCTGTCTG 59 NA Rattus norvegicus 81 Tp53rk ENSRNOG00000007285 ENSRNOT00000049082 3 1 1 60 3 163554929 163554948 CTATGTCCTGGAGAAAGCCT 59 163554970 163554989 GGCTTCAAACACAGTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359503 ENSRNOG00000046342 ENSRNOT00000045955 3 1 1 60 16 70644603 70644621 CGAAACTTCAAAGGCCCTG 60 70644644 70644663 CTCTTTCTGACTCCAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684871 ENSRNOG00000049811 ENSRNOT00000072459 3 1 1 60 16 72389047 72389065 AGACAAGAAGGCAGAGGAG 59 72389089 72389107 CTCCTCCAAATCTTGGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a1 ENSRNOG00000016281 ENSRNOT00000057386 1 1 1 80 16 83609827 83610566 AGAGAAAGGAGACCATGGC 59 83610609 83610628 CCGACATCACCTTTATCACC 59 NA Rattus norvegicus 81 Mybl2 ENSRNOG00000007805 ENSRNOT00000010343 3 1 1 80 3 159440991 159441010 TCCTGGACTCCTGTAATAGC 58 159441052 159441909 AGTTCAGAAACTGGGAAGGA 59 NA Rattus norvegicus 81 AABR07052844.2 ENSRNOG00000059153 ENSRNOT00000066294 2 1 1 81 3 78493383 78493406 GATCTCTTAAGACTCAAAGTCAGG 59 78493324 78493343 AAGAGGATGACAACCAGGA 58 NA Rattus norvegicus 81 Wfdc12 ENSRNOG00000032412 ENSRNOT00000041980 2 1 1 94 3 160581722 160581740 CTGGAGGTGGAGTCAAAGG 60 160581533 160581552 GTTGTCATTGTGACACTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000089329,ENSRNOT00000068416 3 2 2 80 16 82205205 82205223 GTATTCCAGGGCATTGACG 59 82205267 82205784 TAGATTTGCCTTCGCTTCC 58 NA Rattus norvegicus 81 LOC100359747 ENSRNOG00000042156 ENSRNOT00000064894 1 1 1 65 15 32136777 32136795 ATTCCTGTTCTCCTGGCTG 59 32136986 32137004 GAAAGAACCTGCTCGACCT 60 NA DesignNoJunction Rattus norvegicus 81 Kirrel ENSRNOG00000016408 ENSRNOT00000077375 1 1 2 117 2 186439634 186514928 TTTCTCACAAGCTTTGGCG 59 186439535 186439553 AGAGTAGTTGAGGAGCACG 59 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 3 2 2 110 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757595 33757614 GAACTGTCTGCTTCTAGCAG 58 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000089303 2 1 2 92 2 52514610 52514628 TATCACCAGCAAGTACCGT 58 52514434 52514555 TTCATGTGTTCCTGTTTGCT 58 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000080677 3 1 2 84 2 56123073 56123091 CATCTCAGCCAACAACAGC 60 56121596 56123028 TTCATGGACTTTACCATGTCCA 60 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000064712 1 1 2 80 5 138354318 138354337 TGGATGGAAAGCATGTAGTG 58 138353485 138353575 CTAAAGGAGCCTGGAACTC 57 NA Rattus norvegicus 81 Pkn2 ENSRNOG00000011317 ENSRNOT00000090705 1 1 2 91 2 248758679 248758767 GACTCTTCTGAATTGAGAACCA 58 248758286 248758305 GGACGCATGTTATTTCTGTC 57 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395 1 1 2 80 X 31179221 31179239 ACAGTCTGATGCTGAAGGA 58 31179281 31180271 GTAAGCGATTGAGTTGTAGGT 58 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000077096 3 1 2 83 2 123824699 123824717 TTACTGAAGGCCTACTTGC 57 123824762 123848105 CAGCTTGTCACTAAATTGCTC 58 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000011317 3 1 2 115 X 1766248 1769877 CAAAGTGCAGAGATCCGTG 59 1764428 1764446 CTAAACTCGACGAAGGCGA 60 NA Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 3 1 1 95 2 39316695 39316717 GACTCATTGATAATCCCAGAGGA 60 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046,ENSRNOT00000089371,ENSRNOT00000041367 3 3 6 81 1 76610656 76614117 CAAGTCAGGAACGAACTGG 59 76610593 76610611 GGTCACAGATTGGATCCAC 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000064593 3 1 6 80 1 76463737 76470293 AAGGAAATGGGAAGCAGTG 58 76463675 76463694 CCAGTCATTAGTTGTGCCTG 59 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086343 2 1 3 93 14 86159553 86164229 AGTTGTTGACTCTGGTCGAG 60 86159479 86159497 TCCATCTCCTTCTGCATCC 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681 2 1 2 80 2 170272947 170276261 AAGGCTACATGGAACAGGA 58 170272885 170272903 GGATGGTTAGGTAGTGCCT 59 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 2 3 3 80 2 184901906 184903595 TACATACAGGACTCTGCTGG 59 184903638 184903656 AGAAAGCCAAGAGAAGCCT 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567 3 2 3 80 15 43020607 43020947 GAAGAGAACAGGCAGATACG 58 43020988 43021008 AGGTACACTTATTCAGCTCGA 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 2 2 2 93 X 31130159 31130177 TGCAAACTCTTGGAAGGCT 60 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000090097 1 1 2 82 13 26807849 26811207 TCATCCAAGTCACAGGAGG 59 26807785 26807805 CAGAGTTATAAACGCTCCCTG 59 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000073659 3 1 3 92 9 8091223 8091244 TTTCTATGCTGCTTATCTGGTC 58 8093277 8093300 GAGTGCTATTGAAGATGGCA 58 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513 1 1 3 93 9 8091223 8091244 TTTCTATGCTGCTTATCTGGTC 58 8093279 8093298 GTGCTATTGAAGCCGATGG 59 NA Rattus norvegicus 81 Rn60_X_0580.1 ENSRNOG00000042227 ENSRNOT00000066392 2 1 1 61 X 57186416 57186436 AAGAGCATGACAGGATCTGAG 60 57185879 57185900 CCACATAAACGAAATATGTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000061814 1 1 3 86 13 25994601 25994619 CAGGCCTTCCTTCAGAGTC 60 25994667 25998651 GTGCTGTAACACATTGAAGCT 60 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 3 2 2 80 1 32224225 32224998 CTCAACAGAACAGGATTTGTG 58 32225039 32225058 AATATTCAAAGTCTGCCGGT 58 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000035888 3 1 2 80 15 45932484 45946987 ATGCAAAGAGACCATGTGTC 59 45932423 45932441 GACTATCCAGCTGCTCTCC 59 NA Rattus norvegicus 81 Tspyl2 ENSRNOG00000061782 ENSRNOT00000087671,ENSRNOT00000085905 1 2 2 80 X 22410984 22411004 CAGTACGCTACTACATGAGAG 58 22410685 22410944 GATTCTTGGCTCTACTTTCCT 58 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 1 2 2 80 1 7314027 7316421 AGATGTTCTGGAAAGACATGGA 60 7313968 7313989 CTCTGCTTTAAGGAGTTGAAGG 59 NA Rattus norvegicus 81 Apbb1 ENSRNOG00000018020 ENSRNOT00000024402 1 1 2 80 1 170397176 170403329 GGACACAGATTCCTTCTGGA 59 170397115 170397133 GTGTCTTGGACCCTCATCC 60 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000085462 1 1 2 80 16 19044831 19047167 ATCCCATGTCAGAAATCCG 57 19047207 19047229 CCTCTTTGGTGATAGGATATCTC 58 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608 3 1 2 100 2 188227459 188227478 TCTTCCCATCCTCATTTCCA 59 188226039 188227397 CTGTTGAAGCTTTCTCATGC 58 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 1 2 2 80 1 89535302 89537997 TGCCTCTCACAGAATACATCC 60 89535242 89535260 TCACTGTACAGACCTTGCC 59 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963 1 1 2 83 9 85495454 85499666 GGCTGTAATGGAATTTCACG 58 85493035 85493053 GACACTCGGTTCTGATGAG 58 NA Rattus norvegicus 81 Slx4ip ENSRNOG00000007430 ENSRNOT00000009743 2 1 2 148 3 129897324 130009855 ATTTGTCATCAAATGCGGGA 59 130014618 130014639 CCTTAACTCTGGAATCAATGGT 58 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 3 2 2 88 9 9142232 9142253 CCAGAAGTGTAAATTCGAGAGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 1 2 2 80 4 118546280 118546300 ACAGAAGGACATTGAACAGAG 58 118544787 118546239 ATGCACTTCACTATAGCCAG 58 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 1 2 2 80 13 27909755 27910720 TCTGATCTCACTGTGGTGG 59 27910763 27910782 ACTTTCTGTCAGGGTTTCTG 58 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 3 2 2 80 1 171974085 171974104 CAGCTAATTCGCCACATCAC 60 171972980 171974043 ATCCTCTTCTGTCTGGTTGG 59 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907 2 1 2 80 11 58809683 58827002 CCCACCCTATTCAAGAAATTGG 59 58803425 58803444 TGGATCCGTTGATTCCTCTC 59 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000087005,ENSRNOT00000054944 1 2 2 80 10 109857052 109857071 CAACCTTCCTAACAATGCCA 59 109857113 109858454 GCAATTCGAACTGTGTTCTC 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000084756 3 1 10 82 2 231243010 231255698 TTACAACAGCAACACTATCCC 58 231242948 231242966 CTGAAGCCAAGGTGATCTG 58 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 3 2 2 84 1 100395180 100395199 TGCTGATACCAATGACAGGT 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 1 2 2 80 2 188004523 188004541 CATGTAACGTGACCATCCA 58 188004585 188004866 CAGCTTTCTGTTGCTTCTG 57 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 2 3 3 89 10 4345457 4345476 GTTTAAGGACAGCAGGAACC 59 4345523 4347177 TGGTCTTACCTTCATCTCTTAAGG 60 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000035346 2 1 2 80 10 30983602 30984446 CCACTTTGTAGATGAGCATGG 59 30984488 30984506 TCCTGTGCAAACTCAACCA 60 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000085613 2 1 2 118 6 27561413 27561431 TGGGTTATAAGCCAAAGGC 58 27560602 27561102 AGTAGCATATGTTGGTCTGTG 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000087291 3 1 2 83 17 42926491 42927686 CTTTCAGGCTCCAGTATGC 58 42926426 42926444 AAGCACAGTTGGTTTGGAG 59 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000075545 3 1 2 86 20 10438618 10438636 TCCTGTCTTCCACCATCAG 59 10438685 10438964 TATGGGTCATGAGCTCAGAG 59 NA Rattus norvegicus 81 Ndc80 ENSRNOG00000013727 ENSRNOT00000080498,ENSRNOT00000018644 1 2 2 80 9 119858842 119858863 TGCTATGAGAAGTTCATGACTG 58 119857205 119858802 ATACAAGTCCTTCAGCTTCG 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000086644 2 1 4 99 10 39220332 39220351 TAAGGATGACTGGAAAGCCC 60 39211327 39220270 CCTCCAGTCTCTGTCTGAG 59 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000079585 3 1 2 80 18 37245785 37245803 GAGGACATTGATACCCGCA 60 37096115 37245744 CGTAGAGATAATGTCAGCTTCG 59 NA Rattus norvegicus 81 Psen2 ENSRNOG00000002879 ENSRNOT00000091715,ENSRNOT00000040203 2 2 2 82 13 98525066 98525084 TCTGATCATGATCAGCGTC 57 98522387 98525022 CATGGATGAACTTGTAACAGC 58 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144 3 1 2 102 10 39458783 39459328 TTTGACTTCTCGAGGAGCG 60 39461591 39461610 CACCAGCTTCAACATCACTC 59 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 2 2 2 80 15 48424774 48427702 TTCACAAGTATTACGCCTACCT 59 48424715 48424737 CACAGTTGATATACTCATCCACC 59 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000007726 3 1 2 99 19 25158104 25158122 TAGACTGGGCTCAAGATGG 59 25153749 25158041 TTGGTTTGACTGCTCACTG 58 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630 3 1 2 81 19 25155960 25156061 TTCATAAAGGAATTAGCACCGC 60 25155900 25155918 ATGCTACAACAGGTGTCCC 60 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 3 2 2 80 6 91549328 91549346 GGTTATGGGTACAGGAGGC 60 91549388 91552270 CCAGAATATCTGCTCTTCCCA 59 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000064668 1 1 2 117 6 91557933 91557957 GGACTAAGTGCAGATAATATTCCAC 60 91560444 91561817 CTTATGACCTGAACATTCTGGG 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 3 2 3 181 10 77755795 77763104 TTCCAGCGTTTCATGAACC 59 77765298 77765316 ATCCCGTAGATCCATGCTG 59 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000074278 2 1 2 80 2 173834556 173835731 TAACTGGAAAGGTGCAAGC 58 173834494 173834514 CATCATCACATGCATTAGCAG 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344 2 1 2 157 17 15358007 15358026 TTTAACAGGAACTGTGGGCA 60 15357283 15357891 TAGAGACATCTTGTGTCTGAGTC 60 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939 3 1 2 86 17 43464378 43464509 CTCAAGAGGATTGCTCGCT 60 43464557 43464577 AATATGAAACCACAATGGCCC 59 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000029677 3 1 2 81 9 53453119 53453137 TGGAGGGCTCTACAAAGAC 59 53450301 53453076 AAGTCATGACCTTCCATACAC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000087964 1 1 2 85 13 96122333 96141610 AGCATACATTCGGAGTACTG 57 96141655 96141676 CTGCCATATACTTCAATTCCAG 57 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000087964 3 1 2 86 13 96122334 96141612 GCATACATTCGGAGTACTGGA 60 96141655 96141678 CTCTGCCATATACTTCAATTCCAG 60 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 1 2 2 80 20 5530004 5530022 TTTCAGACACTCCCAAAGG 57 5530066 5530179 TCCCTGAAATGAAACGGTC 58 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 3 2 2 81 2 188753600 188753618 TAGGGCAGCATGTTACAGG 60 188753663 188753761 TCGAAGAGTTCTCTGCCTG 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889 3 2 3 169 1 140855509 140857385 GTGAACTCGAGACCACCTC 60 140855358 140855377 TAGGTGGTTGGAAAGATCGG 60 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000080684 1 1 4 80 17 43534639 43537132 CCGGAAAGCACAGAATTCC 59 43534577 43534595 CTATTGAGGTGGGATGGCT 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 1 2 2 80 14 86377157 86379583 GAAAGGCTAAGAAGGTGAAGAC 59 86377098 86377116 GCTTTGCTGTGGGTTTAGG 60 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497,ENSRNOT00000085451,ENSRNOT00000079711 2 4 4 80 10 82078730 82080621 TCCTATGCCTTACAGGTGAC 59 82078669 82078690 CACGGCTATGATATTAGACTCC 58 NA Rattus norvegicus 81 Arhgef11 ENSRNOG00000015026 ENSRNOT00000091336 3 1 2 80 2 187081484 187081502 GAGGACAAGAAGCGAAACC 59 187081543 187082179 CAAGGGAATATGAAATGTGCTC 58 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 2 1 2 238 5 116963694 116963713 TCCAAGGAAAGAAATGGTGC 59 116964751 116964769 CAAGGCAGATTGCTTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 3 1 1 61 12 11734961 11734979 TGGTTGGGTTCGACTACAG 59 11735006 11735025 TCGCTTTCCCTTTCTTATCG 58 NA DesignNoJunction Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000011166,ENSRNOT00000082359 1 2 5 80 4 22344993 22345011 CATGAGGAGATCGTGAAGG 57 22341876 22344951 TCTGGTGTTGTATTTCTCAGG 58 NA Rattus norvegicus 81 Mrps2 ENSRNOG00000010164 ENSRNOT00000013548,ENSRNOT00000082883 1 2 2 80 3 7053734 7053753 CAGAATGGAAGGAAGGTCAC 58 7053795 7054272 TATCCTGCTCTGGAAATCGT 59 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 2 2 2 80 10 105137630 105137650 GTGAAGATCGACAAAGTGAGG 59 105131425 105137588 TTCTTCACTTTCAGCCTGC 58 NA Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056250 1 1 3 93 9 121862890 121873383 GTATCCAGGTATGGTAAACCGA 60 121873437 121873455 TTCATGGAGGGATTCTGGG 59 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 1 1 2 80 2 60562466 60562486 CTCAGAAAGAAGTGGAACTCC 58 60561385 60562426 GAAGACACATCACTCAACTGG 59 NA Rattus norvegicus 81 Ddit3 ENSRNOG00000006789 ENSRNOT00000083472,ENSRNOT00000008941 1 2 2 83 7 70584141 70584159 TATGAGGATCTGCAGGAGG 58 70584204 70584526 TGATTCTTCCTCTTCGTTTCC 58 NA Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 1 2 2 80 10 63762600 63762747 GAATTGGAAGCAAGAACTTGTC 59 63762785 63762806 CACTTGAACTTGACAGTAACCA 59 NA Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 2 2 2 80 10 63756373 63756391 TGAGGCATGGAAACATGTG 59 63756434 63762545 TCTGCCTTGTAATCCTTGCT 60 NA Rattus norvegicus 81 Ccdc89 ENSRNOG00000022766 ENSRNOT00000024095 3 1 1 60 1 154606757 154606775 CTAGAACTGCTCAACTCGG 58 154606797 154606817 CCTTCATCTTCTCCATCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hebp2 ENSRNOG00000053735 ENSRNOT00000079522 3 1 1 95 1 13718179 13718197 GAGCAGCAACATGATCCAC 59 13714991 13718120 GAATCCATCGAAAGACCGC 59 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058833 3 1 3 117 X 36969074 36992604 CATCCCTGAAAGATGCTGC 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058834 1 1 3 119 X 36969075 36974122 GTTGTCACCATCTGATGCTG 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 1 1 1 60 1 238834523 238834546 GATACTGGAGACATGGTTAATCAG 59 238834256 238834274 CAATGCTGCAGTTCTTGGA 59 NA DesignNoJunction Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 1 2 2 80 4 79895953 79895972 TATTAGTGGAAGCGTCACCC 60 79896014 79906818 TGACACTTGACAAACACCTG 59 NA Rattus norvegicus 81 Nacc1 ENSRNOG00000002864 ENSRNOT00000091670,ENSRNOT00000003884 1 2 2 80 19 25789030 25789048 CACAGATGAGCAGTACCGT 60 25788888 25788986 ACCTTCTCAACTGTCTGGC 60 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000064284 3 1 2 80 10 103673814 103679299 CAGGTAAGAGGTATGACAGTG 58 103673754 103673772 CAGAGATGACTGGGAGGAG 59 NA Rattus norvegicus 81 Jakmip3 ENSRNOG00000027590 ENSRNOT00000082751,ENSRNOT00000030461 2 2 2 80 1 211381616 211383131 GATGAGCTTTCTAAGACCCTG 58 211383827 211383845 TTTCCGATACCTCAACAGC 58 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570 3 1 2 81 18 51492339 51560420 TCCGTGTTTCTCAGCTCAG 60 51560465 51560483 TAGGAGATTGGGCTGTTGG 59 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097 2 1 2 85 11 57458601 57460552 AACAACAGCACTTTAGAAGC 57 57460600 57460618 TTTCTTTCGAGGCAGAGTG 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 3 3 3 80 5 151051031 151052225 ATTTGACAGCCATGAGGAG 58 151050969 151050988 ATAAGTTCCAGGTCTTGCTC 57 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 3 3 3 80 5 151051033 151052228 CTCATTTGACAGCCATGAGG 59 151050972 151050990 AGTTCCAGGTCTTGCTCAG 59 NA Rattus norvegicus 81 Ate1 ENSRNOG00000024414 ENSRNOT00000067315,ENSRNOT00000079342 3 2 2 81 1 200848260 201026424 CCAAGATGAGATACAAGGGTC 58 200848199 200848217 CATTGCTCAATGGGTACCC 59 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 1 2 2 80 7 116701682 116702379 TGTAGCAGAGATTCCAAGATCC 60 116701623 116701642 CCACATGACTGTGTTATCCG 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000077573 1 1 3 87 3 72433316 72433334 ACAAAGGTGAAAGGCTTCG 59 72432620 72433267 GGTACTTCTCTTCATTCTGGG 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000086937 1 1 9 107 20 2083572 2087964 AGCACTTGAATTGGCTTGG 59 2079779 2079799 GGGAGTTGTAATTCTGGTCAC 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000089216 3 1 9 87 20 2077532 2078843 GCAGTACAAGGAATCTTCTATCC 59 2077467 2077485 CCAGATAGTGACTGTCCCA 58 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000055540 3 1 2 89 4 176918818 176922297 CGATCCTGTTCATTGGATGG 59 176918748 176918766 ATCTCAGGTTGTGTCCAGG 59 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000084180 2 1 2 80 17 45510467 45510487 TCTACAACTACGAGCTCTGTC 59 45510529 45510551 TGACAAAGAGGACGTGTCC 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000052367 3 1 6 80 6 4311886 4315592 GATGAGTGAGAAGAAAGGTGG 59 4307798 4307817 GGAATCGGATGATCTCTAGC 58 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000077653,ENSRNOT00000072033 3 2 2 80 9 10021188 10021292 ATGACCCAAACAAAGCTGC 59 10021336 10021354 GTTGCTGGTAGTAGTGGGA 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000029487 2 1 4 80 1 82338653 82338673 GACTATCAGTGTGAGATCTCC 57 82331752 82338611 GGTCACTTCCCGTATTACG 58 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090 3 1 4 99 17 27506902 27506923 TCCTCAGGAAACTTTGAATCAG 58 27523800 27523821 GGCATAGCTTGTATCTGAGAC 58 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 3 2 4 83 X 54235604 54235623 AAATCCGTTACTCCACCTGG 60 54229835 54235560 ATGGGATACCACTTTCAGGAG 59 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580 3 1 2 81 1 219407197 219407305 CGAGTCTGCAATCAGAAGAG 59 219407135 219407156 GTGTCATCTGGACTATCTACTG 58 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 3 2 2 72 2 61692290 61692311 TGAAGGAGAACAACCAAATCTG 59 61691855 61691873 GATCCTGAGAGGGATGACC 59 NA DesignNoJunction Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000083851 3 1 2 84 20 12075250 12075268 CACCTGTACATCAGCACCT 59 12075316 12076502 GTCTATCAGCCGGTTCCTC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000081447 1 3 5 80 12 52398979 52399100 AAGTTCAAGTTCTCAAAGGGC 59 52399139 52399160 GTCAGAGTCCTGATCAAATGTG 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000050354 1 1 5 102 13 47421968 47421986 AATTACAGTGTTGGGAGCC 58 47415472 47421902 CATTCTCCACTTCTTGGGT 57 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000055238 1 1 2 107 10 88952679 88952697 AACTTTGGTGGGATCAGGG 60 88952766 88959739 AAAGTCAAACTCTTCTGCGTC 59 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000080013 1 1 2 80 6 6637363 6637384 GGATGTTGACAACTATGATGAC 57 6637423 6638641 CCTCGATAACCATATACCCAC 58 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000076614,ENSRNOT00000010065 2 3 4 60 7 116747359 116747379 GAAGGTGACTGACTTCTTCCA 60 116747550 116747570 TCGATTCTTGGTTGAGAACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000076614,ENSRNOT00000010065 3 3 4 60 7 116747366 116747384 ACTGACTTCTTCCACAGGC 60 116747559 116747577 ACTGCCATCGATTCTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000084678 1 1 5 85 X 64251128 64275849 GCGTCTAAACAGAAAGGTGTC 60 64251063 64251081 TACTGGCCCTGGTTTAACG 60 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000017243 3 1 2 81 8 123326997 123327016 CATCAACCTCATCCCTCTCC 60 123317689 123326959 AGTGCTATATGCTATGTAGACTCTC 60 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 2 3 3 83 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504993 47505011 TGTAGCGAATTTCACAGCG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619 1 1 3 80 4 181214889 181214907 CATTTAGACAACCCTGCGT 58 181214948 181214971 TTGCAATATCTGTTCCAATCCC 59 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 3 2 2 80 4 33750805 33750826 GGTCAAATACCATCACTGTACG 59 33750513 33750765 ATCTCAAAGCCTGGGAAGAG 60 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000082191 3 1 2 130 15 57242186 57242314 AAAGATGGCTGTCTGTCAC 58 57243594 57243612 TCATTGCAGCTGATGTACC 58 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 2 2 2 67 16 19637557 19637577 ACCAGAACATAGATGATGACC 57 19636633 19636651 CAGTCTTTCCACAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201 2 1 3 149 4 118486200 118500909 GAAAGACCAGAACGTAGGC 58 118484941 118484959 TCTATGTCGCCTTGGAGAC 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 1 2 2 80 5 100935355 100935914 TGTGAAGAAATATCGCGGC 59 100935293 100935311 CCACAGGATCTTCCAACGA 59 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000078714 3 1 2 83 16 19659071 19659089 CAGAAACATCAGGAGCTGG 58 19658289 19658310 TCTTTGAAGCGCTAACACAG 59 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467 1 1 2 80 18 36850668 36851677 CCAAGACCGGTGTATTACCA 60 36851720 36851738 CAGGTGAAGCTGCAATAGC 59 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000086979 3 1 2 80 18 36846542 36846561 CTTTCCCACCAGTAATGGTG 59 36846603 36851681 TTCCTGGTAATACACCTGGA 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 3 2 5 82 1 80524477 80524495 TATGGTGTGGACAAGAAGC 58 80524297 80524434 CTTTCAATTCCATGTGGATCAG 58 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290 2 1 2 80 1 247133384 247133404 GTGACAGTTGAGAATCATGCT 59 247133446 247134246 AAATCTTGGAGCCTGTGGT 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 3 2 5 80 15 10303413 10303431 AAGAAGACCCAACTGGAGC 60 10302132 10303371 CCACATTAACTGTGTCAGTGG 59 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288 1 1 2 80 7 70460336 70460456 CAGTGTAATGACTTGGTGCTC 59 70460276 70460296 GCTCACAAAGAGTTGTTCTGG 60 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288 3 1 2 80 7 70460339 70460459 GCTCAGTGTAATGACTTGGTG 59 70460279 70460300 CACAAAGAGTTGTTCTGGAGTC 60 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000009687 1 1 2 80 3 79605480 79605498 CTGGAACAGAGGAGGACAC 59 79605538 79605669 CAGTAGAATCAACTGAACTCTGG 59 NA Rattus norvegicus 81 Tmem143 ENSRNOG00000021096 ENSRNOT00000028650,ENSRNOT00000082917 1 2 2 80 1 101884699 101886182 CTCCTGATACAGGAGTTCCA 58 101886224 101886243 GGTACAGAAGTCCACATGAG 58 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000087182 1 1 2 87 5 22392771 22392791 CCACTTGGAAGAGATTTGCC 59 22392841 22392859 TCATTCAGTTCCAGGCGAG 60 NA Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 3 1 1 85 2 191294266 191294286 ACAGACAAATTGGATGTCCAG 59 191291774 191291793 ATACCACTTGCATTCAATGC 57 NA DesignNoJunction Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 3 2 2 86 4 113952880 113953040 TATGAACTCTGGTGGTTCTG 57 113952813 113952831 GAGTTTAGCTCTTCGGTGG 58 NA Rattus norvegicus 81 Mpdz ENSRNOG00000007894 ENSRNOT00000089235 2 1 2 116 5 99468332 99470864 TAATTACTTACGTGCCTGCAG 59 99465732 99468255 CTGGAATATCTCTGCCAGTG 58 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000050868 2 1 2 159 2 188664200 188664218 TACTTGGTGCCAGCTACTG 59 188663135 188663712 ACATTAGCTTGCTTAGTGCC 59 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000060020 2 1 2 136 12 19581287 19581306 TTTCACTGGATAGACTGCCC 60 19580694 19580845 TATTCAGCACCTTGAGGACG 60 NA InUTR Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 1 2 2 80 9 78927602 78927620 CTGTGAAGAACGAGGAGGA 59 78925760 78927559 CAGGCAGGAGATTTGTTAGG 58 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064345 1 1 4 80 3 111728692 111728714 CTACCATAAAGGGCAAACTAACC 60 111728752 111729341 CCTCTTCTCGGATAGGATTGG 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064395 3 3 4 80 3 111728694 111728714 ACCATAAAGGGCAAACTAACC 59 111728756 111729340 CTCTTCTCGGATCACAGGA 58 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000068410 2 1 2 92 4 22970354 22970372 AGGAATAATTGCTGGCACC 58 22975179 22982551 CCATTTGACCTCTGTTCTCG 59 NA Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 3 2 2 81 3 165520822 165522726 ACCTGAAGGTACACTACATGAC 60 165520762 165520782 ATGGTATTCTCTATGGCCAGC 60 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000081104 3 1 2 81 7 134482360 134482517 CATGCTCGATTGGTATGGTC 59 134482298 134482316 TTCCAGTCTGTCACCACAG 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000080386 3 1 2 80 X 104488524 104488542 GTTTCTCCCATTAGCGAGG 58 104487779 104488480 GGAGTACTCAGCGATTCTC 57 NA Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 1 1 1 60 4 118160263 118160282 AGAATATCCGGAAGATGCAG 57 118161100 118161118 TTGTCTTCACAGCAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 3 3 3 80 15 51815486 51815505 GCCACGATTCTATAACAGCC 59 51815545 51817860 GAGTAGTAGATAACCTGTGCCC 60 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017042 2 1 2 81 10 64751725 64753218 CTTCATCAACTTCCAGAACTCC 59 64753260 64753278 GAACTGGACTGGCTGAGAG 60 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017042 3 1 2 82 10 64751724 64753217 CCTTCATCAACTTCCAGAACTC 59 64753260 64753278 GAACTGGACTGGCTGAGAG 60 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000004017 3 3 4 80 5 116652392 116652413 GGAAAGTTCCTCATACTACAGC 59 116652453 116658826 TTGGTAGAGCTGGTAGAGGA 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 1 2 2 80 8 71191712 71191731 ACTGATAGCAACACCAAACC 59 71191774 71192198 ATCAGGTCATAAGGGTCCC 58 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 1 1 1 62 7 140467185 140467203 TACGCTTCCTCATGAACCT 58 140467644 140467662 GCATCTCAGAGAACACGGT 60 NA DesignNoJunction Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 2 2 3 90 1 197549471 197549489 AAACCTTCTACCTCCTGCA 58 197549110 197549418 ACATGAGACCTCTCATCGAG 59 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 3 2 3 91 1 197549472 197549490 CAAACCTTCTACCTCCTGC 58 197549110 197549418 ACATGAGACCTCTCATCGAG 59 NA Rattus norvegicus 81 Alas1 ENSRNOG00000056596 ENSRNOT00000086232 2 1 2 96 8 114940077 114940096 CAGAAGCGGAAATCTCTGC 59 114939997 114940015 GTTGCTGTGAAGTGGACAC 59 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000058817 1 1 2 80 10 39688707 39690533 TCTGAAAGTCACAGAGAAAGTG 58 39690574 39690592 TCAAACATGTGAGCCAGAG 58 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 1 3 3 80 7 63747924 63771620 TGGCCATTGACTTGATTGAC 59 63771662 63771681 AGATGATTCGAATGTGCTGG 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773 1 1 2 80 6 25076761 25077527 TTCATCAGGTGCAGTACCC 59 25077570 25077589 CCCACAAATATGAGGACCGT 60 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000011003 1 1 2 80 3 46601397 46621637 TCGAGTGGCGTGATAAAGG 60 46601335 46601354 TCAGTACGGATTTACCTGCC 60 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 3 2 8 110 13 68709342 68709779 GTTCGACTTCAGGTCTGTG 58 68709853 68709871 AACTCCATGAGGGTCACTG 59 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 3 2 4 100 3 112229218 112250999 GAGACCTCCGGAAATTTGTG 59 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 1 2 4 80 2 9456253 9456272 AATTGGCTTTCTTAGCAACC 57 9455314 9456211 TGCAAGGGAATAGATACCAC 57 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000003255 3 1 2 83 11 66801381 66801399 AGAAGGAGGAACTCATCGG 59 66797947 66801335 GCATCACCCTCAATTTCTGG 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867 1 1 2 80 1 214192878 214193380 CCTTCTAACAAGGCACCTC 58 214193422 214193442 CTCATCTAGGATATGGAGCTG 57 NA Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 2 2 2 80 1 229049450 229050280 CAGATCCAAAGTTCACAATCCA 59 229050320 229050339 TGTTCTCTTGACCTTGACCT 59 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 3 2 2 80 12 17547848 17547867 TTCAGTTCCTGTACAGGGAG 59 17546457 17547806 TGAGGACTTCTAGCACAGTG 59 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832 1 1 2 95 10 15998616 16009597 GTTCTCTGCTTATTAATGGTCAGTC 60 15998545 15998563 CCAGACCACTGTGAAGAGG 60 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 2 2 2 80 7 97057461 97057481 GAAGGAACTCCAGAGAATTGC 59 97053303 97057419 TTGGATCGCAAGTCCTCAG 60 NA Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 2 2 2 81 1 219363601 219364104 AGATGCTGAAGGTGGAGAG 59 219363538 219363557 GGTACTGCCTTTGCTTTCTC 59 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 1 1 1 88 15 82081292 82081310 TAACAGACTCTGCCAACCA 59 82081221 82081241 GGTTGACAAATGTTGTTACCC 58 NA DesignNoJunction Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000090654 2 1 2 97 14 35085619 35087241 CATTTAAAGAGCAAATCCAGCC 59 35085543 35085563 AAGAACCATCACAATGATCCC 58 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050 2 1 2 96 14 35085622 35087229 ACAGCAAAGAGCAAATCCA 58 35085544 35085563 AGAACCATCACAATGATCCC 58 NA Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 2 2 2 80 10 43873942 43873966 CTAGATCTTGTGAATTCTCCAAAGG 60 43873998 43874473 CTCTTCGGTTTAATAGAAGTAGTGG 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 2 2 3 93 11 71120949 71128132 GTGACAAGGTTCAGACCCA 60 71117915 71117936 CGAGTTAATCGTGGTTTCTGAG 60 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 3 1 2 80 X 63283488 63284452 CAGCTCTTCTATTGATAGCTGG 59 63283429 63283448 TCATGATTTCTATGGCAGCC 58 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299,ENSRNOT00000012095 1 3 3 186 13 52629405 52631326 GAGGAAATCTAAGATCACTGCC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 1 2 2 80 2 78037568 78038096 GAAGAAAGAGAAAGAAAGCGAG 58 78038675 78038694 TTGTTGCTTCCTTGTTTCTG 57 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000028219,ENSRNOT00000088037 2 2 6 80 15 37013932 37013950 AAGGAGAAACTGGAGGCAG 59 37011900 37013890 ACGTCTCATTAGATCTTGCCT 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405 3 1 3 82 5 117754340 117754358 AGTAACCTGGGATCTGCAG 59 117753143 117754295 GGTGGTAAACACTTCTCCAG 58 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000081971 3 1 3 80 5 117746629 117746894 TGCCTGAAGAAAGTGAAATGG 59 117746569 117746587 TTCTGACCACAATTGCCCA 60 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560 1 1 2 166 1 101049498 101049516 CTCAGAGTCCAGGAGTCCT 60 101047201 101047550 CTTCTGAGGCTGGAGTAAGG 60 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000000756 2 1 2 101 20 19373752 19373770 TGTGAAGGTACCTCACTGC 59 19373665 19373685 TTGAGCAGGTCACAGACAG 60 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000065051 2 1 2 80 1 72656428 72656446 GTTGTTTACCTGTCGTGGA 58 72656489 72657601 GTCATCTGTCCATGAGATGG 58 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079 3 1 2 82 10 17621126 17621144 AAACAGACCTACAGATGGC 57 17621187 17630195 TATCCCAGATCTCTATGTCCTG 58 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000036359 2 1 2 80 9 78585567 78585585 AACCCAACTACAAAGGCCA 60 78585503 78585526 TGTTAAGACAGAAACAGTCCCA 60 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109 2 1 2 82 3 112475262 112475954 GCTGAACTTTGAACTGAGGA 58 112475996 112476017 AATCATTCTGGAAGACTAGCTC 58 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 3 1 1 99 15 57505508 57505526 GCACTACAAGGCTAAACGG 59 57568077 57568095 GATGGCCCGTCTACTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 2 3 3 90 20 27176707 27176727 AACTCTTCTTGAATTCCACCC 58 27176774 27176985 CCTTGATTATCCATTCCATCTCTG 59 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 3 2 3 82 8 107522049 107525333 GGATAAACAGCAGTGTGGG 59 107525377 107525397 CTTTATAGGTTGGTGAGACGC 59 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 81 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 1 2 2 80 7 24070384 24072226 ATTCCTGTAGTTCAGCTCCTC 59 24070324 24070344 TTCTGAATAGTTCTCCTCGCC 60 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000042743 3 1 7 81 15 5467009 5467029 AAGCTAGTTCAGAAGGAGAGG 59 5466200 5466969 GAATAAACCAAGACAGAAGGCC 60 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 3 5 7 81 15 5509800 5509819 GCTAGTTCAGAAGGAGAGGG 59 5466198 5509758 CCGAATAAACCAAGACAGGAG 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 2 2 3 82 7 143068231 143068986 AGACCAAGTTCGAGACACTC 60 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266 3 1 2 90 20 9852860 9852878 GAGCAGTGTAACAACCGTG 59 9850976 9852808 ACGTACATTCTGTCTCTTGCA 60 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494 3 1 2 103 7 31822066 31823608 CGTGGAAGAGTACAGTTGTG 59 31821982 31822000 GAGGAACAACAGCAGTGTG 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000015840 2 1 2 95 5 169576692 169580568 ACACCCATGGAAGAGACTG 59 169576615 169576633 GATCTCCATGGAGCTCCAG 59 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663 1 1 2 80 20 28722666 28757521 ACAAAGACCGAAAGAAGACTG 59 28722606 28722627 AAATACACAGTCTCACGTTCTC 59 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000077797 2 1 3 82 3 8648754 8648774 AATTCCTTGACAATGCCTGTC 59 8648818 8650295 CTCACAGAAGGTCACCTGG 60 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 2 2 3 81 19 49462568 49465002 TCTGCTATGTGAGGACAAGTG 60 49469920 49469939 CTGGTGCCGATGAAATTGAG 60 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 1 4 4 80 12 19937959 19938338 AGTGGAGCAACAGATTCCT 59 19937897 19937915 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496,ENSRNOT00000083116 2 2 2 82 2 187367988 187368472 CGAAGACCTAAATGGAGAACTG 59 187367927 187367945 GTTCCAGACAGTAGTCCCG 60 NA Rattus norvegicus 81 Bcan ENSRNOG00000018798 ENSRNOT00000025496 1 1 2 80 2 187361407 187362222 CTTTGTCAACGATCGATACAGG 60 187361348 187361366 TCTGACCACAGGAAGTCAC 59 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000010910 1 1 2 80 13 113915555 113927695 AGTTCTTGAGCTTTCTTGTGAC 59 113915496 113915514 CCAGGAAGTACGGGAAGAG 59 NA Rattus norvegicus 81 Faim ENSRNOG00000030463 ENSRNOT00000045821 2 1 2 80 8 107230049 107231028 TTGAAGATGATGAAAGCCCTC 58 107231069 107231088 CGTCACTTAATGCTACGTCC 59 NA Rattus norvegicus 81 Zfp780b ENSRNOG00000045741 ENSRNOT00000071261 1 1 2 81 1 84640145 84640164 GATGCTACTCAGAAGGTCCT 59 84640208 84642222 AAATGCAACTTCCCACCAC 59 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000083561 2 1 2 80 13 91736600 91737015 AGTGCTCATATCTCTGGGTG 59 91735315 91735334 ATTCTAATCCACGGTGGGTC 60 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 3 2 2 80 10 62694593 62694612 GCTGGGTCATATCTTCACCA 60 62694136 62694550 TCTTCGAAGTTGTTCGGGT 59 NA Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 1 2 2 80 18 51845896 51859196 CTGGACACTAGTGTCATTTAGG 58 51845837 51845856 ATGAGGAGAATCACCCTCTG 59 NA Rattus norvegicus 81 March3 ENSRNOG00000023013 ENSRNOT00000081020,ENSRNOT00000039177 2 2 2 80 18 51845895 51859195 TGGACACTAGTGTCATTTAGGT 59 51845836 51845856 AATGAGGAGAATCACCCTCTG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000085050 1 1 8 90 20 1959670 1959825 TGAATACGTGGCTTGGAGAG 60 1959599 1959617 ACACAGATGGGTGAGTCAC 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 3 2 8 157 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979762 1979782 ATAAGCTTGAGCTCGTAGTCC 60 NA InUTR Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143,ENSRNOT00000086745 2 3 3 80 3 93693184 93693202 GTTGTCCAAAGCAACTGTG 58 93690295 93693141 TTCCGATGACTGCTAAATCC 58 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 1 2 2 80 13 75118022 75118727 TCACTGACCAGAAGACCCT 60 75118768 75118789 TGCCATAAGATACTGGTAGGAC 59 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866 3 1 2 81 12 16107019 16107037 TGCCAATTTCCAGAATCCC 58 16107082 16109723 CATGCTGGAGGTGTATGAG 58 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496 1 1 2 80 5 142907152 142907170 TTTGGCATTGTCATGTGGG 59 142907212 142907394 GGCCTTGATTACATCTTGTCC 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 1 2 2 80 12 17254939 17257980 CATTCAAGAAGGATGTGCAGG 60 17258021 17258040 CATCTGGGATGTCACCTCTC 60 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000064252 3 1 2 82 8 115152512 115152995 AGGGTCAACTTCCTAGCTG 59 115153038 115153059 TACATGCCACTTAATGATGGAC 59 NA Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 3 2 2 83 4 180131576 180132031 CATAGAGACAGAGGCACCT 58 180132078 180132096 AGGATACGGAGGTTACTGG 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 2 2 4 113 1 50930320 50930341 CTGAAGCTGGGTTAATCTACAC 59 50930412 50931121 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 2 2 2 80 X 115633341 115633359 TCAACAACACCTTCTGTCC 58 115633011 115633297 CATGACGTTCTGTGAAGCT 58 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 2 3 3 82 11 70381895 70381916 CAGACTTCTAGGAGTGAATCAC 58 70359773 70381855 AGAAAGAAATCTTCTCCGTTCG 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000073798 1 1 2 98 1 99449363 99455727 AAACTTGTCAGGATGGGCA 60 99455789 99455807 ATCCCACAGTCACCATGTC 59 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190 2 1 2 81 20 13606583 13606602 AGAGGAGAGTGGCTTTAGAC 59 13604724 13606539 GCCTCTCCAAACATACCTG 58 NA Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000062073 1 1 2 60 4 480679 480699 CCATCTAGCTGATATGCTGTG 59 476986 477004 ACTGTTTGTAGGAGTGCCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 3 2 2 81 3 95313044 95397388 CTACCTGCTGAGGTACTGTG 60 95397432 95397450 TTTGCACTGATTGGTCACC 59 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135 3 1 2 92 3 153441422 153441440 CAGACCCTGAAGTACCTGG 59 153441494 153445300 ATGTGCTGTTCTCTTAACTGC 59 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407 1 1 3 80 13 77640860 77640880 GAGTATCCTATCGACCACCC 59 77641842 77641861 CCTGGTGATTGTGAACTCTG 59 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000083269 3 1 2 96 15 104027054 104101869 AAAGTAGAAGGTTACATCCAGG 58 104101925 104101944 ACTTCATTCCAAAGAGTGCA 58 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 2 2 2 80 1 265788827 265788847 CCATATGGTAACCAGACAGAC 58 265788667 265788786 GAGATTGTCACACTCCTCTG 58 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509 2 1 2 80 13 92332868 92332888 GGAGTTTGAACAGAATGCCAG 60 92333976 92334867 TTGAGCAACGATCCATCCA 59 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 1 2 2 80 3 113269954 113270157 AGAACCTTCAGGTGACTCTG 59 113270200 113270218 GCTGCTGTTCATGTGTCTG 60 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 2 2 2 80 7 35532160 35535148 AGGTACAGGTATGAGCGAC 59 35535192 35535210 CTGCTTCAGGTTAGCTGTC 58 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920 1 1 4 106 12 5773027 5822309 TGGAGTAACGCTTCTCCAG 59 5772939 5772957 ACATTGATCGGCAACATGG 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483 3 1 4 81 12 5575502 5575521 GAGATCCGAGACATGATCCG 60 5574964 5575458 CTAGTGCCGGAAACATGGA 60 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923 1 1 2 103 7 143219711 143220813 GTGAACATCTCTGTGGTCAC 59 143219627 143219645 AAGGAGTAGCCACTGTTCC 59 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 1 2 2 80 X 122590468 122591754 CAGATCCCATAAAGACAGCC 58 122591796 122591815 AGGGCATTCTGTATTGTCCA 59 NA Rattus norvegicus 81 LOC360479 ENSRNOG00000028075 ENSRNOT00000087029,ENSRNOT00000036954 1 2 2 80 10 10804458 10805752 TTCACCTGAGCCACTTCTG 60 10804396 10804416 GCCAAGTCCTTTGATCTTACC 59 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 1 2 2 60 14 107393319 107393337 CACCTTTGACAAACACGGA 59 107393359 107393379 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018 2 1 2 192 1 48677741 48681125 CCTCTTGAGTATCAAGCAGGT 60 48681279 48683753 CATCCCTGCAATGTCACAG 59 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147 1 1 2 80 8 71900177 71914858 CTCACTTTGATCTCAAGCCAG 59 71914897 71914918 CAAAGTCAATCAGCTTGATGTG 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 1 2 3 80 5 173257587 173257817 ACATTCCATGGAGCATGTG 58 173257860 173257879 ACATCTCTGATTCGTCTTGG 58 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000083027,ENSRNOT00000055336 2 2 2 80 7 143466246 143467082 ATCTATTTGATACGGAGCTGTC 58 143466187 143466206 AGCGGTTATTGTCCATTGAC 59 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000055336 2 1 2 146 7 143463667 143463685 TCCTTGGATGTGGAGATCG 59 143462327 143462348 CTGAGGATCGTGAAGTCGT 59 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 3 2 2 80 15 58655663 58656847 AATAGAGCAAGCTATGGATCTG 58 58656888 58656906 ATCTGCTCCTTCAGAACCT 58 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000074740 1 1 3 163 4 183306371 183308684 AAATTCAAGAGGGTGGAGC 58 183306226 183306244 GATAGACGTGTACTGGCAG 58 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884 3 1 4 87 20 2501330 2503562 GCCGGGAAGTTATAATGGC 59 2503613 2503631 ACCTGCAAGTTCTCCAGAG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 3 7 9 91 4 14166242 14166265 GGGTTACAAAGATCCATTCTTGAG 60 14166309 14169640 CTCCATCTACAGTGTTATTGTAAGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 94 4 14236301 14236319 CATACTGGTCAAGCCAGCT 60 14236882 14237834 TGGTCCCAGTCTCATTTAGC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000091249,ENSRNOT00000008319 3 4 9 96 4 14236884 14237837 TAAATGAGACTGGGACCATCG 60 14237895 14237913 AAGACCATCTCAACCAGGC 60 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 1 1 1 60 14 86694855 86694874 GCAATTCTGGAGTACCTCAC 58 86690115 86690137 GATCTTTAGAAGCATTACCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025723 2 1 5 99 1 100086594 100088320 ACAGATTGATGCTGCACCT 60 100088382 100088401 AGTTGTACCAATGACAGCCA 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025723 3 1 5 99 1 100086593 100088319 GACAGATTGATGCTGCACC 59 100088381 100088400 GTTGTACCAATGACAGCCAC 60 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423 2 1 2 80 2 173472331 173472350 CGATGTCTTGAAGGATCAGC 59 173463491 173472288 CTCTGTGATTTCTGGCCTG 58 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 3 2 2 80 18 56840133 56840152 CTCTTTCCAAGAAGACCACC 58 56839385 56840091 ATTCCTTGTCTTCTGTCCTG 57 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000074230,ENSRNOT00000071067 3 2 3 84 12 24595376 24599715 AATACACGTCTCCAGGCTC 59 24595310 24595332 CTTCAGGAAGAAGGAATTCAGAG 59 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000089146 3 1 3 113 10 84637060 84637777 TGACATCCTCTAAGAGCCA 57 84636032 84636050 TCTCCAACATCCTACACCA 58 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 2 3 3 100 12 17743323 17745689 AGAGAAGTATTGAGGAAGCCA 59 17745751 17745769 CAAGAAGTTGGCCGATGTG 60 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 1 3 3 80 3 2514182 2514275 GGTCAAGAAGGAGATTCCCA 59 2514121 2514140 AGTCCTACTAGCAACCACAG 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000057718 3 1 4 118 X 71963094 71963407 GAGTTTGTATTGATGCCTGCA 59 71963486 71963505 TTCCAGGCAATTTGCTTGTC 60 NA Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 3 2 2 80 1 31979807 31980077 TTCTGATTGATGAGGTGGAG 57 31980120 31980138 CACGGATAGCATCTGATGG 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000084151 1 1 2 83 10 4568045 4571097 GCCTTTACAGTTTGATCTATGC 58 4571139 4571159 GGACTATGAGCAAAGGAACAG 59 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984 2 1 2 84 10 43885484 43891528 AAGACTTCCGACTTCTGGG 59 43885418 43885436 GACACTTGAGACCACTGGA 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612 1 2 3 80 7 123125404 123125423 CCATCCACTGTGATCATCTG 58 123125464 123129590 CTTCCTGGTTTATGTCCTTGG 59 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000077544 2 1 2 80 1 245926449 245930764 AGGAGATTAGGCACTAGAGGA 59 245926389 245926411 TAGACGGTTAAGAGGAGAATCTG 59 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000086502 3 1 2 80 15 14622496 14622514 GAGACTCCTCATCCTCAGC 59 14622430 14622453 TATACACGACAGTAGCCAGG 59 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000046288 3 1 2 86 X 105188511 105188661 CTTGTACAGAAGGCAAAGTCAG 60 105188708 105188726 GCAATGAACCAGAGCTGTC 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 1 4 4 80 7 122238165 122238964 TGACATGAAGGTGGCAGAG 60 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999 3 1 4 87 13 78520212 78521857 GAGCTTCCTTACAGAAGATAGCT 60 78520147 78520165 TGCCCTTTCTCGGAATCTC 60 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000070825,ENSRNOT00000071829 1 2 3 80 17 66481696 66481863 CAGAAGAACTGGAAGAACCTC 58 66481903 66481923 GAGCTCTTCCTTCTTCATCAC 59 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000013366 1 1 2 80 15 103885128 103927531 GCTTGTTCTTCTGGTACTGG 59 103885067 103885085 CGATTGCCTTCGTTAAGGA 58 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 1 3 3 80 15 24161528 24164288 CAACGCAAACAGTATCACTC 58 24164331 24164349 TTGTTCTCATTGAAGCGGG 59 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000040188 2 1 3 80 3 146383982 146388993 CTGTGGATGTGAAGCATGTG 60 146383921 146383943 TGGTCTCTATTTCTCCATTCTCC 60 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000064483 1 1 2 100 14 92485009 92485027 CAGGGACAATATTGCTGGG 58 92478991 92484948 TGAGCATTTCTCTTCTGTTGTC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000085031 3 1 4 81 6 109673386 109673407 GAATATCATGACTCTGAGTGCT 58 109673449 109674061 ACCAGTGATGAATACTATCCAC 58 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000051754 3 1 2 150 7 117470964 117470982 TTGGCCTCTACAAGAAGCA 59 117471560 117472112 GATCCCTGGCCTTTCTGAG 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 2 4 6 115 19 33932967 33965639 ATGTGTTTAAGCTGTTGGCG 60 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 1 4 6 114 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000064264 2 1 2 84 7 97778407 97782674 CCACTCACAACGGAATTATAGTG 60 97782717 97782736 AAAGCCACATTCAAGAACCG 60 NA Rattus norvegicus 81 Suv39h2 ENSRNOG00000015585 ENSRNOT00000020924,ENSRNOT00000077953 3 2 2 81 17 78775619 78775641 GACTATGAGTCTGATGAGTTCAC 59 78775679 78778109 TTGGGTCACAACTATGATTCAC 59 NA Rattus norvegicus 81 Cers5 ENSRNOG00000052990 ENSRNOT00000080109 1 1 2 80 7 141389522 141389541 GATGTTGCATGTCATCTGGT 59 141387759 141389480 TCATCCTTAGACACCTTGCC 60 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 2 2 2 80 11 83911275 83911530 CTGGATAGAGGCCAACCTG 60 83911213 83911236 GAATAACAGACAGTTGTCATGAGG 60 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 2 3 3 81 20 3149119 3149138 CTGTCTCTGCAATTGTCCTC 59 3149182 3149689 CTTCCTCTTTCACCTGCCT 59 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159 2 1 3 107 20 3147443 3147645 TAAGAGCATGGACGACTTCC 60 3147715 3147733 TCTACACCATCAAAGGCGA 59 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 3 2 2 92 8 116096804 116096822 ATCACAGTGATTGGTCTGG 57 116101243 116101261 GTACATAGGCATGAGCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000085310 2 1 3 80 10 5240097 5253201 TTACCTGCAAGGCCATACTC 60 5240036 5240055 TCACTGTTAAGGAGCTCCAG 59 NA Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 3 2 2 80 13 99246577 99246596 CATCCTCTATACCTTCCGCA 59 99246638 99247895 TATTCAAAGGCCTGGTTCTG 58 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006 3 1 2 82 7 10992823 10992841 CTCCTATGTCAGCCTCCAC 59 10992279 10992777 GCGACTCAAATGCCATCAG 60 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000041844 1 1 3 94 11 67642223 67642241 AACAAGATCCGGGTGAAGG 60 67642298 67644545 CTAGGTTCAAGCTTCTTGCC 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076057,ENSRNOT00000088114 1 6 7 80 X 70644937 70645257 AAGCACTTATGGAAATGAACCG 60 70645298 70645316 CTTGCTCCAGTTTCATGGC 60 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 3 2 2 86 1 2005659 2005678 TCTGAGGTCAATGAGATGGA 58 2005389 2005612 TTCTTCGAGTGAAGGTATCTG 57 NA Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000083336 3 1 2 105 1 100893269 100893288 TGTCTCATTGACAGCTTCCT 59 100893356 100894612 AGAGGGTTTCCTGCATGAC 60 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000035317 2 1 2 83 18 73564368 73564386 CTTCATCTTCATCTGCGCC 59 73564430 73603595 TCGAAGTACCTCTTGATGTAGC 60 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000078699,ENSRNOT00000090999 1 3 3 80 20 3296487 3296506 CTCCACATTGTCCTGTTCAC 59 3296132 3296445 CCGACTCTTCTTCAAGACAC 58 NA Rattus norvegicus 81 Gnl1 ENSRNOG00000000798 ENSRNOT00000050373,ENSRNOT00000090999 2 2 3 81 20 3297994 3298113 AGCACAATTTGGAGACATGG 59 3297932 3297951 TGTCGGATGTCCGTAATGAG 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251 1 1 2 80 8 5985294 5985596 TTGTTGACAGCAGGTATAAACG 59 5993978 5993997 CACAGTGCTAATCTGACTGG 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283 1 2 3 87 1 215273114 215273132 ATTGACAAGGACAAGGTGG 58 215272623 215273066 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928 1 2 3 90 13 48071613 48075034 ATCAACAAGCAAAGGAAGCG 60 48071542 48071560 AGTCAGTCAGAGAACTGCC 59 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000084530 3 1 2 80 1 82099605 82099624 TCAATGCCATTCTCATCCCT 59 82099000 82099564 GAGTTAAAGCTTGTGAGGACG 59 NA Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 3 2 2 80 8 48442670 48442688 AGCCTTCCCTAACATCTGG 59 48442732 48442834 CTTGTCAGGCTCTTGTAGC 58 NA Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 3 2 2 80 20 29043886 29043906 CCTACTTCATCACGTATGGGA 59 29041642 29043849 CTTCAGGATAAACATATTCCTGGC 60 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000092086 3 1 4 80 1 154447406 154447427 GCCAACCTTAATATACAGCCAG 59 154447466 154447618 AGTACTTGTATCTGTGCTCCT 58 NA Rattus norvegicus 81 Spsb3 ENSRNOG00000015300 ENSRNOT00000020733 2 1 2 89 10 14249054 14249072 CAAAGTCATGGGTGTCTGG 59 14249125 14249326 ATAGTGAAGAGGACCTGGC 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 3 1 1 97 6 98605992 98606010 AAACCCTGAGGTCAGACTC 59 98601622 98601642 AACTGGTCCTTAATCTTCTCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000003198 1 1 2 96 13 102858938 102913729 CGGAGAACCATACATCTGTG 58 102858861 102858879 ATGGAGTTTCTACACCGGG 59 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345 3 1 2 89 5 160124243 160129232 GTTACCGTTGTGAGGACTG 58 160124172 160124190 GTTTGCAGAAGAGGTGGTC 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494 3 1 2 80 3 97383583 97383602 TCTTCCTAAGGAGCCTTGAG 59 97383643 97385301 GACTGTAGAACACTTCCACCT 60 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 1 2 2 80 6 1581574 1583197 GTTGTCCTGTCAGCTTTGG 59 1581512 1581532 AGGTGCTTTGTAAGAATGGAC 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 3 1 1 82 9 85542900 85542918 CTTCCAGAAGGAGCTGGAG 60 85544455 85544473 AATCCCAGTTTGGCTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 3 3 3 97 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671237 52675785 ATGGTAGTGCTCTTCTCGG 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857 2 2 3 80 19 52685650 52685668 TCCTTCACGATGTGGAGAG 59 52685712 52692105 CAGATGCTGGAAGTGTCAG 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000081021 1 1 10 89 7 117253868 117257198 TTGTGTAGATGAACGAGACC 57 117253489 117253507 TCACTGATGTGCCTTTGAG 58 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 3 2 2 93 1 80307608 80307951 GAGATCCGTGAGAAGGTCC 59 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378 2 1 2 81 15 28495995 28496013 GTGTGAAACGATCTGCAGC 60 28495449 28495954 TCAAATGAGGAACTGAGTAGAGG 60 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378 3 1 2 81 15 28495996 28496014 GGTGTGAAACGATCTGCAG 59 28495450 28495954 CAAATGAGGAACTGAGTAGAGG 58 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000031653 3 1 2 82 12 2213719 2213739 AATCAACCCAGAAGAATGCAG 59 2213783 2214013 GGATTGTGAGCACCTTCAC 59 NA Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000091828 1 1 4 105 5 141075461 141076134 GTCTGCTCAGATTGCAGAG 58 141074528 141074546 TACTTCAGCAGGGATCAGG 59 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025354 1 1 2 80 18 56078567 56078586 TGGCTGTTGTTTGAAATGAG 57 56078627 56079534 GCACTTGGTCAATACTTTAGG 57 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 2 2 3 233 20 3439934 3439952 CATCTCCACACCATGACTG 58 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 1 2 2 80 14 21052107 21052125 GACGTGCACTTTGATACCC 59 21052163 21052712 CTCAATATACCTATGTTGGACATGC 60 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 3 2 2 80 14 21042289 21042307 TACCTCATTCGAGCTCAGG 59 21042351 21043380 TCGGATTCTGCAGTCTGAG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 2 2 2 82 3 101908248 101910818 CAGAAACGAACCAGTTCTGC 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 2 2 3 80 19 53638877 53639691 AGAACGCAAACAAAGAGTGG 59 53639732 53639752 ATTGCTGTAGAACCTACTGGG 60 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 1 2 3 80 18 63016852 63029863 GTGCGGGACAAATCATCAG 59 63029907 63029925 CTGTCACAAGATCTGCAGC 59 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000085767 3 1 2 80 15 23576467 23576488 ACCAGTGTAATACCCTGAATCC 60 23572679 23576183 GAAGCACAAGCTTTAGGGC 60 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840 2 1 2 81 3 3776259 3776672 AGTTCTATGAGAGGAACCTGTC 59 3776714 3776732 TTACCCAGGTTGCCATAGG 59 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 1 2 2 80 2 102726668 102726686 AATTGTTCAGGAGAGGCAG 57 102726141 102726624 AAGCCAAGATGATGTGCTC 58 NA Rattus norvegicus 81 Tex36 ENSRNOG00000026848 ENSRNOT00000086703,ENSRNOT00000037064 1 2 2 80 1 205663071 205663091 TCCACTGTCCATACTTGTCTG 60 205662279 205663029 TGTTTGCTGCTTGCTTCTC 59 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 1 2 2 80 9 74047917 74047936 TTTCCGAATCCTTATGCCGA 60 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 2 2 2 80 2 197738366 197740041 CTAGACAGAAAGGTCCTGC 57 197740084 197740103 TGCTTTAATGTGTTTGAGCG 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000088151,ENSRNOT00000091890 3 2 2 80 4 163393744 163395474 TATCACCCAACGAGTTAACAC 58 163393684 163393702 CTGTGTAGGCCTTAAAGCT 57 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 1 2 2 105 17 76008900 76016082 GTTCTGAGGTCATGATGCTG 59 76016150 76016168 ATATCACAGCTGGCAACCA 59 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000017550 1 1 2 80 X 122945062 122945085 CACTCAGAGAATTTCTCTACTGTG 59 122945124 122951521 CTGAATTCTCCCTTTGCGC 60 NA Rattus norvegicus 81 Cyp2u1 ENSRNOG00000011053 ENSRNOT00000055570,ENSRNOT00000089674 3 2 2 84 2 236426621 236431083 CAAGGAGAAGGGAATCGTG 58 236426555 236426573 GAAGTGACGAAGGGTTGAG 58 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000044778 3 1 3 95 1 3872220 3890876 CGACTTCCGATGTGAAAGAC 59 3872144 3872163 GAAGAGCAGAAATGGCTTCC 59 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000077340 1 1 2 90 1 53536315 53539508 GAGAACATTGTACATACGGATAGAG 59 53539556 53539574 TTGAGGACTTCCAGAAGGC 59 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015 1 1 2 80 1 53542837 53543623 GTGTGGCTGCAGAATATTCC 59 53543663 53543684 CTCATCTTCCTTTGTAGTGTCC 59 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015 3 1 2 80 1 53542839 53543625 GTGGCTGCAGAATATTCCAG 59 53543664 53543686 GTCTCATCTTCCTTTGTAGTGTC 59 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 2 5 5 81 19 43234682 43234701 AAAGTGATTGAGCAGATGGG 58 43234742 43237115 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000028780 3 1 2 136 2 198439031 198439417 CTACTTTGGGTTCCAGTTGG 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000035558 1 1 3 60 13 79888499 79888523 GTACTCTGGTCTTCATTACTTTCAC 60 79888540 79888559 TCTGTCAGGGTCTTTAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000028801 3 1 2 80 2 198704066 198704085 AGAAGAGGAAGAGGAGAAGG 58 198703052 198704026 ATGATGTAATCAGTCTCCTCCT 58 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 2 2 2 60 16 21347803 21347821 GTTATTGCAGCCATTGCCT 59 21347761 21347781 TGCCAAGCAGGTAGTATATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 1 2 2 80 6 122949283 122953089 GTTACTACAGGTTAGGAATGTACC 59 122953125 122953146 ATGTATCTACCATTTCCTGCTG 58 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000068595,ENSRNOT00000082856 2 2 2 81 6 122955445 122955467 CAAGGCTTAGATAAGTTTCCAGG 59 122955505 122964950 ACGAACTGTTGTTCATTTCCTC 60 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382 3 2 3 80 5 159090017 159090035 ATCCATCCACCCATCATCC 59 159089340 159089364 TCTTAGTCCTGACGTACTCCT 60 NA Rattus norvegicus 81 Trmt10a ENSRNOG00000011025 ENSRNOT00000014694,ENSRNOT00000082894 3 2 2 81 2 243429658 243429677 TTACTTGACAAGCCATGGAG 58 243429718 243431340 GTGAATATCCTTCCAGTTGACC 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 2 5 6 80 20 3305443 3306023 GATGATGGAAGACAAATCTGAC 57 3306063 3306082 GCACAATGGTCTTCATATCG 57 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 1 2 6 118 20 3300786 3301071 ACAGTTAAGGACCACCCAG 59 3305191 3305209 TGGTGGAATCATTGGTCCC 60 NA Rattus norvegicus 81 Nlrp3 ENSRNOG00000003170 ENSRNOT00000004280,ENSRNOT00000086710 1 2 2 80 10 45916073 45916091 AGACATGGGACTCAAGCTC 59 45916134 45916567 CTGCAGTTGTCTAACTCCAG 58 NA Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 1 2 2 80 8 99905573 99905592 CTGGTTTGGAATACTTGGCT 58 99908537 99909567 CAAAGCGTGTCATCAATTCC 58 NA Rattus norvegicus 81 Trim2 ENSRNOG00000010124 ENSRNOT00000085382,ENSRNOT00000067618 3 2 2 81 2 183164512 183176331 GATCTTCCGAGTGGGTACC 59 183164449 183164468 CTTTCCACTCGTAGATGCAG 59 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 2 2 2 101 7 142779167 142779392 AACATCCTAGGCTTCATCG 57 142779457 142779475 AAAGTCATAGAGGGAGCCA 58 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000074960 1 1 2 81 7 124171726 124171745 CTGAGATGGGAAAGCAAGC 59 124171659 124171677 AATGACTCTTCCTTCCGGG 59 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 3 2 2 84 3 5121016 5121038 GGATGTCCAGAAAGTTGTAAGTG 60 5122313 5123383 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000040540 2 1 3 87 15 28311303 28312000 CTGCCAAGACTCATTCTGTG 59 28311235 28311253 AATATCGCTGGACGTTTGG 58 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000066975 1 1 2 80 7 49076467 49076487 ATGTATCGGACTAGGCAACTC 60 49075502 49076428 AGGTAGCTTCCATTGTATCCTG 60 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000085291 2 1 2 90 5 163020035 163026155 GCTTTGGACAAACAGAGGTG 60 163019964 163019982 AACCACAATGTGCAACCTG 59 NA Rattus norvegicus 81 Nav2 ENSRNOG00000014530 ENSRNOT00000046529 1 1 2 80 1 104576835 104696212 TTCGATACCCAGATCTACACG 59 104696254 104696272 CTGGAGGTCCTTGATGAGG 59 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000077707 1 1 2 80 1 47985725 47985743 GGAGTAGGACCGATTCCAG 59 47989493 47991231 AAACACGTCAACATCTTCCTC 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 3 4 10 83 9 95234839 95298733 CTTTCCAAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 2 3 10 82 9 95246250 95298733 TGTCTCAGGAATTTGAAGCC 58 95298778 95298796 CTCTGAGACCATGGATCCC 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 2 4 6 81 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566951 3566969 GCTCTGCCTGAAATCATCC 59 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 1 3 3 80 X 128443670 128444870 GGGAATCTGTGGTAAGAACTG 59 128446753 128446773 CCATAGGATTCTGGAAGATGG 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000067913 1 1 4 80 7 124230076 124233808 AGGATGAAGAGTGGTCTGC 59 124230014 124230032 TTAGGGTGACACCATCAGC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 2 3 4 82 7 124230077 124233815 CAGTTTGAGGAGTGGTCTG 58 124230013 124230031 GTTAGGGTGACACCATCAG 58 NA Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 3 2 2 80 X 114992189 114992209 TGTACAGGAATACAGATCGGC 60 114992248 114998952 TCACAATGCTTCTTAGCTTCTC 59 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 1 2 2 80 11 83990372 83990391 AAAGTATTCTGTCGCTGCTG 59 83990432 83991149 CGGAGACAATCTGATTAGGTG 58 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000022060 1 1 2 96 1 151730101 151730119 GAGACGGCAAATCATCGTC 59 151730176 151767502 TCTTTGTACCTTAGGGTTTCCC 60 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000022060 3 1 2 100 1 151730181 151767506 ACCCTAAGGTACAAAGACAGG 59 151767568 151767586 CTCATTGTTGCTCTCCCAC 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 2 2 2 80 3 100389875 100389894 TAATTGGCTACATCGAGTGG 58 100389935 100393602 AGATCTTTATTGAGTCCCTCG 57 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 2 2 2 85 19 563181 563299 CATTTGGGAACAGGATGGA 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000039057 1 1 2 80 2 54813564 54813583 CACTCATCTGAATCCCTCTC 57 54813346 54813523 TTGGGAAGATTAGAGTGAGTG 57 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000082257,ENSRNOT00000042281 2 2 4 80 8 53879399 53883725 GAAGCAAGAGACTCTAGATGG 58 53879339 53879357 TACTGGATGCTCTTCAGGG 59 NA Rattus norvegicus 81 Cox8c ENSRNOG00000031106 ENSRNOT00000052296 3 1 1 90 6 126767171 126767189 AAACCAAGTCCTGACACCC 60 126768015 126768034 GTTGCTCATCACATACGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 1 2 2 83 12 22105895 22105913 CTCTTCTGCCTTTGGAAGC 59 22105960 22106815 GTTAGCATCCGATTGGCTG 59 NA Rattus norvegicus 81 Stard6 ENSRNOG00000026324 ENSRNOT00000085317,ENSRNOT00000002969 1 2 2 80 18 68992101 68992120 GAACACAGAGTTTCATGGGA 58 68992161 68995200 GTGGCATATAAGTGTATCCGA 58 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000081282 1 1 2 81 1 91029582 91029603 GAAGCCTGGAAATCTTGAAGAC 60 91029645 91030651 GCTCCCTGACTCACTTAGC 60 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 2 3 4 83 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470323 28485474 AGTGTACTTCCTTTCCTTCTCC 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000087088 3 1 7 80 2 186160507 186160528 CTCAGCTGCTAAGTATTCTGGA 60 186154352 186160467 GGAGTTCCATTCACTGAAGC 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 2 2 7 80 2 186117956 186122500 CCGTTATCATGAACACGGC 59 186117894 186117912 TGGATGATTTGCTGCTGTC 59 NA Rattus norvegicus 81 Rhbdd1 ENSRNOG00000054963 ENSRNOT00000088677,ENSRNOT00000077265 2 2 2 85 9 88177206 88177224 TGACATCTACACAGCAGGC 60 88177272 88226822 TTCTGGTATTTCCTCGGTCC 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368 3 1 2 81 1 199381341 199382254 GCTTGCTGGGTGAATTCTG 60 199381278 199381298 TTGAGAGGGTTCTGTATCCAG 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449,ENSRNOT00000087664,ENSRNOT00000005853 3 3 3 80 13 47586402 47586422 CTTCTACTGGTGTCTTACCGA 59 47586463 47587017 GGCTTCTTTGTAGCTTCAGC 60 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 3 1 1 71 14 21821903 21821921 AATAACTGCTTGTCTCCCG 58 21819574 21819593 TCAGGTAACTCATCACTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076900 2 1 4 87 13 80429849 80429867 TGGGAATGAGTTGTCCTCC 59 80420093 80429798 CACATATGCCCTTCACGAG 58 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000043799 2 1 2 105 5 140825816 140825834 ACTTCACAAACCACAACGG 59 140825411 140825747 CAGTCAGAGCATGCATCTG 59 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298 1 1 2 152 10 10828180 10828198 GATTGAAGCAGCACCACTC 59 10828700 10828947 GCATAATGCCCATCTCATGG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 2 3 6 96 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429981 3430147 TGATCTCTTCTGCCACCTG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 2 3 6 96 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429981 3430147 TGATCTCTTCTGCCACCTG 59 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000079926 2 1 2 80 10 61718496 61719933 ATAGGCATGAGCACATCAC 58 61718434 61718452 CCTCTTCCTCATCATCGTC 57 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000079926 3 1 2 81 10 61718496 61719934 CATAGGCATGAGCACATCAC 59 61718434 61718453 CCTCTTCCTCATCATCGTCC 60 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086539 2 1 2 96 5 120459329 120459348 ACTACTGCACAAAGGATGTG 58 120459404 120461032 GACTTCTCTGATTTCTGATCCC 58 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000057989 1 1 2 116 4 100424262 100424701 TTGTCCTCAAAGAGCTGGG 60 100424164 100424182 CTCGACTGTAGTCCCACAC 60 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892 1 1 2 80 17 76391273 76391292 GACAGTGACCATCAATGGAG 58 76389529 76391231 ATCACTTCCACAAACTCACC 58 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004 3 1 2 92 20 30839341 30840320 TACCTCCCATCCTACAATTGC 60 30839269 30839288 GTCCATGGAGTAGTCGATCC 60 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392 2 1 2 109 12 12762015 12762033 GTCCCTATGTTATGGCCAG 57 12754413 12761945 ATTTCTAGGCTTCAGATCTCTG 58 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318 1 1 2 173 1 22255249 22275914 TCCGCGGAAATACAAAGGA 59 22252402 22253291 CCTTTGACGCTGTTCACTG 60 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947 1 1 2 121 5 118491160 118491178 TCCCTAGTACCATGCTCCT 59 118478643 118489835 GGATGATGTTCTTTGGGAGG 58 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947 2 1 2 121 5 118491160 118491178 TCCCTAGTACCATGCTCCT 59 118478643 118489836 GGATGATGTTCTTTGGGAGGA 60 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 3 2 3 80 X 77137647 77137666 ACTAACCTCTCCAGAACCCT 60 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000072538 2 1 2 80 15 106284795 106286087 GATGATATCACAGCTACAGCAG 59 106286128 106286146 CTGTGTAAGGTACTCGGGA 58 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 2 2 2 89 6 125656674 125656692 TTGCTACAATCTGCAAGGG 58 125652927 125656621 CACATACAGCGGTTATCCC 58 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000080961 3 1 5 88 9 81662725 81662903 ATGAGGAAGCGATGACAGG 60 81662954 81662973 GACTTGCTCGCTTTACTCTG 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 3 2 3 85 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179839 143179857 GGGTCATGAGAACAAGCCT 60 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293 2 1 2 93 X 118200469 118200487 GAAACTGCACAATGCAACC 59 118200544 118200568 AAGAATAGCCAGGGACAGG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098 2 1 2 81 10 85964774 85964793 TGACAACTCCAGTTCCAGTC 60 85963477 85964730 CTGCTTCTGTTTGGCACTG 60 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 1 1 1 68 20 14618775 14618794 TTTATGAGGACAACCAGACG 58 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 2 2 3 82 14 25791727 25791745 TCCACCTCTTGTGTCTGTG 59 25791791 25859220 ACTGGAGAAGGAGTTGTGC 60 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 1 2 2 80 7 121144316 121144334 ATACAGCACATGGGAACCA 59 121141736 121144273 CGGTCTTTCTCCTCCTTCTC 60 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178 3 1 2 152 3 11831664 11831683 ATTGGCACAAGAATAAGGCC 59 11825464 11831549 TGTGCGTGGATCCTATGAG 59 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021189 3 1 2 81 3 11831594 11831612 GTGAGCCTGAATGAGATGC 59 11830144 11831551 TGTGAGTAGAACCTATGAGCA 58 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515 1 1 2 82 19 42163246 42175295 CCAACCACAACAAGAAGCA 59 42163182 42163203 GAGGTGATACTGCTTATTGGAC 59 NA Rattus norvegicus 81 Slit1 ENSRNOG00000026065 ENSRNOT00000034758,ENSRNOT00000035415 2 2 2 80 1 260847413 260850262 ACATCACTCTTCAGGTCTCC 59 260847352 260847370 GCTCAACTGCAATGTGGTC 60 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 2 2 3 100 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865900 120867150 GGATATGTCCGATAAACAGCG 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000056179 1 1 3 80 7 120860199 120863027 TCCATAAATTTATGGCTGCCC 59 120860139 120860161 CGGAGATCTTCTTACTTGAAAGG 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 3 3 3 85 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63081 63099 AGCAACTGAACAGTGAGAG 57 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000010251 2 1 2 81 3 148181323 148181341 CTGGTCAAGGGAGAAGTGG 60 148185628 148189427 TTTGAGACAACAGAATGGCTG 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000010251 3 1 2 82 3 148181322 148181340 ACTGGTCAAGGGAGAAGTG 59 148185628 148189427 TTTGAGACAACAGAATGGCTG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000009114 2 1 3 100 10 86383148 86383643 AAGAGGATTTGCAGGTCTC 57 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Cyp2c6v1 ENSRNOG00000024016 ENSRNOT00000074103,ENSRNOT00000054742 2 2 2 80 1 147808346 147808365 AGACAACAAGCACAACACTG 59 147808406 147811017 TCTCTTCCTGGACTTTAGCTG 59 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016 3 1 2 81 1 273743355 273750855 GAGTGTGGAAACAGACCAC 58 273743292 273743311 CGAGTTCCTCATAGCTTGTC 58 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000034102 2 1 2 80 15 33727230 33729350 CAACCAGATCACGGTATTCTG 59 33727170 33727191 GAGAGTGTATGAACTCTCACCT 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000077517,ENSRNOT00000014073 2 3 8 97 6 128075900 128077744 CTTTAAAGGCAAATGGAAGGTG 59 128077802 128077820 TCATCATGGGCACTTTCAC 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000077517 1 1 8 85 6 128050254 128050272 CCTTCATTGCAGCTTTGGG 60 128050319 128075366 GAATAGAGTGTCCCTTCCCAG 60 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 3 2 2 81 5 133766381 133786200 CGCATTGTTGAGAAATATGGC 59 133766320 133766340 ACTGTGAATCTGGATTCTTCC 58 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 2 2 2 80 2 197988353 197989384 ATCAGATAAGCAAGCACTTCC 59 197988293 197988311 GGCCCATCTTCCCTATGAG 59 NA Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043 2 1 2 112 6 52122157 52131594 GACTCGTACAAGGTTACTCAC 58 52131666 52131686 TTCACCTTCCTTACTTTGGAG 58 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 1 2 2 87 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787712 47789124 GTACAATTTGTGGCCAGCC 60 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073 2 1 2 104 10 47789559 47792052 TTCACAAGCTGGTTCATGG 58 47792347 47792365 AACAAATCCCTGAGAGCGA 59 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032 3 1 2 151 7 126444020 126461579 AGCTACCTAGCATTGTCATCC 60 126443889 126443907 TCATCGATACCCATCTGCG 60 NA Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000079633 3 1 2 81 1 101512949 101512967 TACCCAGCATTGTCTACCA 58 101512885 101512905 GTAAATAGAAGGCCACTGGA 57 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012 1 1 2 80 4 161690840 161690861 GGATATCTACACTTGGATCGAG 58 161690900 161692273 TGACGAATAGAGTTCTTCCAG 57 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000045766 3 1 3 83 9 73427945 73429560 CAAGGAAGATTTACTTACAGCCTC 60 73429602 73429620 TTGTCTAAAGGCTCAGCGA 59 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852 2 1 2 80 X 70373732 70377459 ATTATGTGATGTCCATGGTTGG 59 70377500 70377518 AGTACTTTGCCACGGTCTC 60 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 3 2 2 106 7 125270665 125274818 CTTTGACCAGAAGGTGCAC 59 125275033 125275051 TGAGGTCCAAGTTCACGAC 60 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000073528 2 1 2 81 1 1772305 1774168 TCATGGACTTACAGACCCTG 59 1774212 1774230 CTATAGGAAGGGCTGCCAG 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125 1 1 2 80 13 49880255 49880273 TGAGATCACGAGTGCTCTC 59 49880316 49882764 GCTTCTACCACCTTCTTCTG 58 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125 3 1 2 84 13 49880250 49880268 ACTCCTGAGATCACGAGTG 59 49880314 49882763 CTTCTACCACCTTCTTCTGGA 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 3 2 3 80 6 126103287 126103306 TTCCCTACAGACCTGTTCTC 59 126103346 126105889 GAACATATAGAGTGCACCAAGG 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 1 2 2 83 4 162185000 162189810 TTCCTCACAGTAAAGTGCG 58 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000029549 2 1 2 80 11 73154326 73158035 CAGCAGAAGGATTTCTCCA 57 73158078 73158097 ATACCCTTCCATGACAATGC 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 3 2 3 80 5 159956691 159957082 TTCAACAGTGAACAGGAGAC 58 159956630 159956650 GATCTCTGGTAAGTCAAAGGG 58 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000003438 3 1 2 113 17 90701130 90701385 GGACTTCAGGGAAGGATCTC 59 90701461 90701479 AGAGGATCCAAGGTGTCTG 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 1 4 4 80 10 18571857 18571875 GCACATACGCACATTACCT 58 18571042 18571813 GAGCAGTCACAAAGTCCTC 58 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000067895 1 1 2 173 4 161652910 161652928 AAGCAAGCCTCAAGTTCTC 58 161652753 161652773 GAGAGTAAGGAGGACCCAG 58 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778 2 1 2 86 20 21935558 21941624 TGATCTCAGCATTGATTCACC 59 21935492 21935511 AGGAACTGTCCATTGGTCTC 60 NA Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 1 2 2 81 X 14506269 14530135 CATTACTACTGGAAGATGCGT 58 14530178 14530196 GGCTAAGATGTTGCAACGT 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 118 11 73697841 73697862 AGTTCCTGTGTATACCAAGGAG 59 73698331 73704380 TTCTTCTAGCCGGACAAGC 60 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 1 2 2 94 10 86987323 86987787 TTTGGAAGCAATCAGTCCC 58 86987247 86987265 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301,ENSRNOT00000013646 3 2 2 134 5 169296482 169300942 GGAGGAAGGAAGAAGAGGA 58 169294256 169294274 GGATTTCCTCCAGCTTCTG 58 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844 2 1 2 111 14 33150506 33164070 GCAGGAAGCTACAGTTATGG 59 33150414 33150432 GTCATACATGTCGTTGGGT 58 NA Rattus norvegicus 81 Ccl24 ENSRNOG00000031162 ENSRNOT00000077378,ENSRNOT00000045157 2 2 2 83 12 24149027 24149045 ATTAGCTACCAGTTGGCCA 59 24151422 24151440 CGTACAGATCTTATGGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000085395 1 1 2 85 1 170269959 170270651 ATTTCCTACCTCATGGGTCC 59 170270699 170270717 GATGAGTCCATAGGCCACC 60 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530 1 1 2 80 12 22965194 22965673 GAGAAGACTCACAGGTCCC 59 22967754 22967772 TCACCTTTGGAACCTGGAG 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 2 2 2 80 8 5686590 5688287 CAGATGATGTCACAGGTACCA 60 5688329 5688347 TGGCTGAGTGAAAGAGACC 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310,ENSRNOT00000091704 3 2 2 80 8 5686591 5688287 AGATGATGTCACAGGTACCA 58 5688330 5688348 TTGGCTGAGTGAAAGAGAC 57 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 2 2 2 80 9 81831247 81831266 CAACTCCTCTCACAACACCT 60 81831308 81834074 TTCAAGGCCCGTATGTATCC 60 NA Rattus norvegicus 81 Mok ENSRNOG00000007850 ENSRNOT00000010529,ENSRNOT00000088986 2 2 2 80 6 135235771 135244150 AATACGAGGGAGAAGACATCC 59 135235711 135235729 ATATGGTCCAGCGATTTGC 58 NA Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 3 2 2 84 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819203 109819223 ATGCTGCTTCTCATTCTTCAG 59 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000004078 2 1 2 87 13 50142078 50149547 CAGACTCAGATCAGAGTGGT 59 50149597 50149615 TGAAGCTGTGGATGGAGAC 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669 3 1 2 80 17 90717913 90717932 TCCTTTCCTATGCACTTCGA 59 90717305 90717873 CCGGAATTCCTCCTTTAATGAC 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000003526 3 1 2 84 17 90715783 90717879 GGCCAAGTCATTAAAGAAAGAC 58 90715720 90715739 ACTGTCCTTACTCTCCTGAG 58 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000079942 2 1 4 84 1 250723431 250723449 TTGGACTTTCAAGCCTCTG 58 250712561 250723386 ATAATAGACCTGGTTTGCAGTG 59 NA InUTR Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076496 2 1 3 86 X 70566337 70566551 CATCCTTGCTATTGCTCCTG 59 70566600 70566618 CAAGTCACTGCACCTTGTG 59 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317 2 1 2 80 5 165425148 165425166 CCCTGAAGTCATTCACTGC 59 165425209 165427079 CACAGTCAATAATGCTGCAC 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000080575 3 1 3 84 4 51930810 51931111 TTTCTCTAGTTCCGGTAACTCC 59 51930747 51930766 ACAACACCATAGACATTGGC 59 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 1 2 2 80 7 126127691 126127710 ATGTCAGAAGAATGTGCCCA 60 126127753 126128428 CACTCATCCACGTCAACAC 59 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 3 2 2 80 7 126122208 126123190 ACTGCAAAGATATTGACGAGTG 59 126123229 126123249 AGGATCCCAGAGTATTCTGAC 59 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 2 2 2 80 19 43937547 43937566 GTTGGATGTGTATGACGTGC 60 43936506 43937505 GGAGGAACATCATACACCGA 59 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 3 2 2 80 19 43937551 43937571 CCGTTGTTGGATGTGTATGAC 60 43936511 43937512 AACATCATACACCGAATGATGG 59 NA Rattus norvegicus 81 Eml2 ENSRNOG00000030127 ENSRNOT00000041215,ENSRNOT00000078336 2 2 2 80 1 80096281 80097762 ATGATGACATCAAATGTCTGGC 60 80097803 80097821 CTTCCTTTGTGGTTCCTGC 59 NA Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 2 2 2 80 5 120639705 120642142 CATGAGTAAAGTGAATGCTGTG 58 120642183 120642201 GACAGTGTCCAGGAAAGGA 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202 3 1 2 80 12 30151051 30180042 CTATGAAGATTGGAAGGATGCG 59 30148254 30148273 TGCTCTTTGAGGTCTGTCAG 60 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000090402 3 1 3 81 1 87097352 87097371 TCACCAACCTAAACAATGCA 58 87095161 87097310 CCTACAATATCCTCAGCATCC 58 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 2 2 2 127 1 80650275 80655213 CTCAGAGTCATAGCCCAGC 60 80650166 80650184 GAGATCCAGGTGATTCGGG 60 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 1 1 4 60 2 118547212 118547232 GGACCTCTTCATCTTACAGAC 58 118584875 118584899 GTTTCCACACTTAGGAATATAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000079782,ENSRNOT00000072426,ENSRNOT00000083314 2 5 7 80 15 34644703 34691911 GCTACTGGTAAGGGAGACTC 59 34644642 34644662 AGTACACAAGCGATAACTGAC 58 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 1 3 7 97 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 3 1 1 134 15 34252040 34252060 TTAACTCTCGGACGATCTTCG 60 34252506 34252524 CTACACGTCGAGTAGCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 3 2 2 80 19 1034445 1034465 AAGAAGAAACCACTGATTGGC 59 1030851 1034403 CTTGCGGATGGAGTATCCT 59 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943 3 1 2 80 7 139668514 139673721 CTATCACTCAGATAACCCTTCCT 59 139668456 139668475 TGTCCATTTGCACTTTGACC 59 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 1 2 3 96 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563952 82563970 AAGATAAGGACACAGGCGG 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000080840 1 3 4 83 1 81796497 81796515 AAGACCCTTCCTGTCTCAG 58 81796562 81796899 CATGAAAGGCCTGTCTGAG 58 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000091578 3 1 2 80 2 198997766 198997790 TGACAAGGCAGGAGAATGAG 60 198997833 198997851 CCACCACTCTGTCATAGGG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000090817 3 1 4 83 5 127613623 127613641 CATGGTCATTGTGCTCACC 59 127613687 127614962 CAGCAATTTAGTGCCCAGTC 60 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000006403 1 1 2 102 6 42255542 42255566 GGGTAGAAGAAATCAAAGCATCC 60 42256291 42256309 ATGTCACTGCTGAGCTCAG 60 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000055285 2 1 2 100 7 144867694 144868594 ATTTGGCAATGATGGAAGCA 59 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939 1 1 2 88 4 10687783 10687801 GAAGAAATCCTCCAGCCAC 58 10687853 10687873 ACACAGTGTAAGGTTGGGA 59 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 2 2 2 80 4 153927657 153927677 TCTCTTCTACCTGTTCAGCTC 59 153927719 153930270 ACGCAATGTTCTGTGTTCC 59 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582 2 1 2 80 3 104168274 104176574 AGCCATGCAAGTAAAGTCTG 59 104168213 104168234 GTCTGGATGGAATACAAGTCTC 58 NA Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 3 1 1 60 15 104191392 104191411 TACGTTTCACAGGTTTGCAG 59 104191349 104191367 CATGAGCACTCTCAGGTCC 60 NA DesignNoJunction Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 2 2 3 130 18 15468098 15480352 GCCAACACATACCTCTTTATGG 60 15480442 15494600 CCTTCGGGATAATCTGTCCC 60 NA Rattus norvegicus 81 AABR07007000.1 ENSRNOG00000013993 ENSRNOT00000045642 2 1 1 63 1 276011870 276011888 TTCCGAGATAAATCCCGGG 59 276011595 276011614 TAAAGAGCCCTCCATCTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Nfxl1 ENSRNOG00000058588 ENSRNOT00000090242,ENSRNOT00000077080 2 2 2 80 14 38217784 38221173 CCATTCCTGTGGAATGTCTG 59 38221608 38221628 GTCTCTTGCATGAATAGGGTC 59 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 2 1 1 72 7 12420951 12420970 AAAGTTTGACTGAGACCCAG 58 12418967 12418985 TATTTCCGGAAGCCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013937 1 1 2 96 4 28647767 28647790 GTTCCTCACTTATATCCTGAACTC 59 28637802 28647713 GCAACTTATAGGATCCCGTC 58 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 3 2 2 80 20 46754142 46754937 ATTTCGTGTCCAGGACTACTG 60 46754978 46754997 ATTAACTGTCCCACATCCGG 60 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 3 2 2 81 13 50993606 50993625 GGGATGACTTCAAAGGTTCC 59 50993669 50994200 GATGAAAGGCTCAGCTCCT 60 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 1 2 3 88 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146092 115146110 TAGGAACATGAGGAGCAGG 59 NA InUTR Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 2 2 2 87 7 60135865 60135883 CATCCTTCTGTGGGAAGTG 58 60134033 60135817 AAGTATGTACTTGTTCCTCAGC 58 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 2 2 2 135 9 92511320 92511338 TATTTCTCCCTCATGCCCG 59 92507133 92511221 TGTCGAAGATCCATCCTGC 60 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000083395 3 1 2 80 8 13569780 13584661 CACAAGGTAATAATGAGTCTGTGG 60 13569723 13569743 CTTCGTCTTCAAGTACTGCTC 59 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530 3 1 2 122 15 60014595 60014613 AATGAGTAGGCGAGAAGCC 60 59990363 60011006 TAAGGAGATCCACCTTTGTCG 60 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 3 1 1 61 8 117932190 117932208 TCTCTACCGTCTCCTGGAC 60 117931643 117931661 TGGGAGTATCTGGGTCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000085094 3 1 2 160 2 85753557 85753809 TCCATCCTGCATTATACTGCA 59 85753931 85753949 CACATTGCATCCTGCACAG 60 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000074573 3 1 2 81 7 106881343 106981165 TAGTCATAAGACCGTCCTGC 59 106752739 106752757 CAAAGCAAACTCAGCTCCA 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 1 2 2 123 8 72742852 72743537 TCTGGCTAGAGATCTATTACACC 59 72743619 72744252 AATCTTGTAGCAACCTGGAC 58 NA Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000081087 1 1 2 80 14 37262073 37294247 CATTGGAAAGACTTTCAGCTG 58 37262013 37262031 TAGCTTGTTAAGGGTGTGG 57 NA Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598 2 1 2 158 6 33841568 33856955 GATTTGGCTCATCAGGAGG 58 33857076 33857095 CAGATCTGTTATAGCGGAGC 58 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 2 2 2 80 4 153909021 153909323 GACTAGACAGCCAGTTTGTG 59 153909366 153909384 TCTTCTTACGGAACACCCG 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124 2 1 2 87 1 184187092 184187112 ACTGGTGCAGAACTATATGCA 60 184185126 184187043 CTGGGCAGTGACACTAGAG 60 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900 1 1 2 82 9 116058678 116061760 GGAAATATAGGACAACACTGCT 58 116058617 116058635 ATGACCCATTCTGCATGAG 58 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000030470 1 1 2 80 6 101612910 101636737 TGCTGCAAAGATTCCAGAC 59 101636781 101636799 GGAGTAGTGCTAAGGGAGG 59 NA Rattus norvegicus 81 Serpinb12 ENSRNOG00000002602 ENSRNOT00000083145,ENSRNOT00000003501 2 2 2 80 13 26988200 26988218 AAGCAAAGCATCTGACAGC 59 26988260 26988585 TCATTTGTAGATTCACCCTGC 58 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 1 2 2 86 8 49299517 49299535 GAGGAACTGGTACTGGTGG 59 49298213 49298960 TTCGGATGGGCTCATAGTC 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369 2 1 2 109 3 122946280 122946944 GGACTCCATCCAAAGAGCT 59 122946080 122946098 CCTGTTCAAAGCTCAGCTC 59 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001 2 1 2 82 4 56813517 56814029 GGAAGATGAAGAGCTCCAG 57 56814248 56814266 AATAGGGTGCTATGGGAGG 58 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330 1 1 2 80 4 157153530 157153549 CTTTACGTCAGACTTCTCCA 57 157150885 157153490 GTGCATTCATTTACATCTACGG 58 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 2 3 3 80 7 40306427 40308077 ACGGCTGTTTAATTAAGGTCC 59 40306367 40306387 CTGGTTTGGAGTTCATGTAGG 59 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800 2 1 2 80 15 39638567 39638587 TCTATCAGGAAAGCATGTGTC 58 39638628 39638995 AAACACGAAGACCTCATCAC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000067251,ENSRNOT00000068116 2 2 5 118 11 78241994 78242012 ACATGAATGGACTCAGCCC 60 78237920 78241913 TTGCCAAATCCTGACAATGC 60 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000002636 2 2 5 80 11 78240624 78240643 GTCTGGACTATTTCACGACC 58 78237914 78240582 TCAGACTTGCCAAATCATCC 58 NA Rattus norvegicus 81 Rangap1 ENSRNOG00000031789 ENSRNOT00000052098,ENSRNOT00000090208 3 2 2 80 7 122941226 122941426 TTGTGACAAAGCCCAATGG 59 122941164 122941183 TCTAGATGCTGTACAGCGTC 59 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697 1 1 2 82 5 128865485 128881879 GAAGATGGCGATGGATGGA 60 128881925 128881943 TTTCCTGAATCAAGCCGGA 59 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 2 2 2 80 7 107595702 107596964 TCGTGTGATTTCTGATGAAGG 59 107595642 107595665 CATATCCCTGGAATGTAACTTTCC 59 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116 3 1 2 125 7 107585888 107585906 CATCCTACCTGTCCCTGAC 59 107585780 107585801 TCTTCAAAGTATTGGGTGCTG 59 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139 1 1 2 80 18 17320652 17320670 CAGCAGAAGCAGAAACGAG 59 17320713 17324795 ATCCTCGTCATCAGTGTCAG 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 3 2 2 80 2 266141629 266142710 TGTCTATCCAAATTGAACACCC 59 266142751 266142769 CTGTTAGTGGTGTGGACAG 58 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422 2 1 2 80 7 117676951 117676969 ATCACTGCAGCTATCACCC 60 117676815 117676907 TCCTCTGTCACCAAGTCTG 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422 3 1 2 80 7 117676951 117676970 TATCACTGCAGCTATCACCC 59 117676816 117676909 CCTCTGTCACCAAGTCTGAG 60 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 3 2 2 83 6 132551490 132551508 AGCCGGATCAACATCTACC 59 132551555 132555560 GATCACAACCTGCTGATCC 58 NA Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 1 1 1 84 6 140980171 140980189 AGTTGTTGCTAAACTGGGT 57 140979981 140979999 AAACCTCCTCCATGTACCG 59 NA DesignNoJunction Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 3 2 2 93 3 118111422 118114765 ACTGGATAACACTATTCATGGC 58 118111350 118111368 TAGTGCAGTATATCGGGCA 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 2 2 2 102 7 12543590 12545667 GTAGAGAAGTCTGGTGCCT 58 12545733 12545751 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000068511 3 1 3 128 2 200713732 200713750 TATGTAGGCAATGTGGCCT 59 200586066 200713642 ATCATCATAGCTTTGGTGAGG 58 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000026748 2 1 3 80 1 199543236 199543729 AGTACCAGTTCAACAACCTG 58 199543772 199543790 TCACCTTGTTGATCTGGAC 57 NA Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 2 2 2 150 14 1779186 1781605 TCATTCCATGATGCCAAAGG 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452 1 1 2 80 2 252805691 252805711 CCTAATCTATTCCAGAGCCAC 58 252805753 252807938 GAACGCCTCATGGAATCTG 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 2 3 3 87 4 162086885 162087877 GCATATAACAACTTGGTTCCC 57 162087925 162087944 TTATGTAGTCCTTGCCACTG 57 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 1 3 3 86 4 162086885 162167864 GCATATAACAACTTGGTTCCCA 59 162167910 162167929 TATGTAGTCCTTGCCACTGC 60 NA Rattus norvegicus 81 Trmt61a ENSRNOG00000011398 ENSRNOT00000078211,ENSRNOT00000015308,ENSRNOT00000086997 3 3 3 102 6 136245338 136245357 TTCTGTGGTCTGTGAATCAG 58 136247592 136247610 CTGGTGGAATTCTACCGTG 58 NA DesignNoJunction Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000083701 1 1 5 80 14 71572857 71576886 GTTGATACCAAGGAGCCAG 58 71579464 71579484 GATGACGCAGATAAGAACTCC 59 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 1 2 2 80 10 104621348 104621366 TGGTACAGGACGTTATGGG 59 104621205 104621307 GGTCTATCTTGAGGACATTGTG 59 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000057502 3 1 2 90 11 89254505 89254525 AAGACAGTGAAAGCAACTGAC 59 89253810 89254453 TTGCTAATGGCAGGGTCTC 60 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 2 2 2 89 8 49096434 49096725 ACATGATCTGTGCCATCCT 59 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 1 2 4 82 10 23664289 23664970 CAGCAATGGGATAAGGACC 58 23675996 23676014 GGCCTTCATACACTATGGC 58 NA Rattus norvegicus 81 Actn1 ENSRNOG00000056756 ENSRNOT00000088795 1 1 3 114 6 103380859 103380877 CTTCAACCACTTTGACCGG 59 103378152 103379823 AAATTCTGCCTCTCCCTGG 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907 2 1 3 80 13 56077119 56096843 TGGAGATCAGGAAGTTCTGC 60 56098742 56098762 CCAACTTGATTCTGAGACACC 59 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000040740 2 1 2 81 1 261428422 261429863 AAGATGCAATAGAGGAGACCC 59 261430050 261430068 ATGGTCAGCTCATCCTCTG 59 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000091320 3 1 2 87 17 9836355 9836373 CTGGAGGACTCGATTGTGG 60 9835019 9836304 GACCAAATTCCATCAGCCG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 1 2 3 80 12 37625151 37625170 CCCAAGTAACAACAGTTCAC 57 37625210 37626997 CGAGTAATTTCTTCACCTTTCC 58 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297 2 1 2 80 7 37018732 37101427 GATGATAAGACTCCTGGGAGAG 59 37101464 37101486 GACATCCACCGTATTTATAGGAG 58 NA Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 2 2 2 82 9 16819536 16819555 GAAAGGAGAACATAGCACCC 58 16819262 16819491 ATAGTTCTCCTTCCCTGGG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524 3 1 3 80 19 62066517 62066538 CTCCAAATGGAGAACTTCACTC 59 62064494 62064534 AGTTCAGTTGTTCTTTCAGGG 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000040204 2 1 2 149 9 15640626 15646337 GCAGATAACCACTTCTGATGAG 59 15639804 15640521 GGCTCGTGTACTTTAATAGAAAGG 60 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000090831 1 1 2 91 12 37519725 37524809 CAAGCGACTGCTCTTTACG 59 37524864 37524882 ACACGAGTCTTCTGACAGG 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415 1 1 3 99 6 51356149 51356167 GTAAGGGTGTCAACTTCGC 59 51333962 51356086 ATAACTGGAGCGTTGAACG 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000060327 1 2 7 82 20 4096453 4096768 ACTTCAGCCAACAGGACTC 60 4096812 4096832 TTTCAAGACATGGTGACAGTG 59 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 1 2 2 80 2 22084639 22084660 ATTAGTCTTCTACCAGATGACG 57 22083267 22084598 TACTACAGGCACTGATCCA 57 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884 2 1 2 80 13 57131466 57131484 CCTCCCAGGTACAGATTCC 59 57131525 57226427 GTAGAATTCGACTTGAACCCTG 59 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000085626 3 1 2 115 7 77158474 77158496 TGTTGTTCATGCACTCAGTG 59 77158378 77158396 AATGGGAGACAGTCTGGTG 59 NA Rattus norvegicus 81 Mtor ENSRNOG00000009615 ENSRNOT00000014167,ENSRNOT00000080751 3 2 2 93 5 165355407 165355564 CCATGATGGTGAGTGAAGAG 58 165355620 165355638 CCAAAGTACAAGCGAGAGG 58 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808,ENSRNOT00000072280 3 2 2 60 6 142418582 142418600 AGGCAGATTCACCATCTCC 59 142418540 142418560 GTTATCCATTTGCAGGCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000 3 1 2 81 5 59016766 59020276 ACCTGGAAGAGACTTTGGC 60 59016703 59016722 TTGAGTTCCAGAAGGGTCTG 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000091220 2 1 4 112 18 56307107 56307125 ACTGATGGTACACATGCGA 59 56307010 56307031 GTGTCTGGTCCATCATGGA 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 1 3 3 80 1 214154472 214154490 ATGAGGCTGGTATCCACAC 59 214154335 214154430 CACAGTTCTCCAGTTTGAGTG 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 1 3 3 80 1 214154472 214154490 ATGAGGCTGGTATCCACAC 59 214154335 214154430 CACAGTTCTCCAGTTTGAGTG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 1 2 2 80 14 77314621 77314727 GAAGTTTCAGAACTGGATGAGG 59 77314562 77314581 TCGGAGAAGATGTTCCACAC 60 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 2 2 2 80 10 88282226 88282427 TATGCAGATGACATGGATGC 58 88282165 88282183 GTCCATGTGCATATCCAGG 58 NA Rattus norvegicus 81 Jup ENSRNOG00000015380 ENSRNOT00000089933,ENSRNOT00000040845 3 2 2 81 10 88283938 88283956 CTCTTCAAGCATGACCCAG 58 88282227 88282429 CATCCATGTCATCTGCATAGG 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 2 1 1 60 10 14052722 14052740 CTCTTTGCCACAGATCAGC 59 14051905 14051925 TCCCTAGGGAATGTCTAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000017349 3 1 2 86 17 9611504 9613040 CAGTGGCGATTTCCTTGTC 59 9613089 9613108 AGGATGATGAAGAGGACGAG 59 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 3 2 2 80 6 106500907 106500926 CTACGTCTTCCCAATCTCAG 58 106500969 106502152 CAGAAGTAAGGAGCCTGGA 58 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000068407 1 1 2 80 4 156780960 156780981 ACATCAAGTTCAGTACCAAGAG 58 156781021 156784682 TTTCTTAAATGCCAACCCGA 58 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 2 2 2 157 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664470 15664489 AGGTTTCATGAACATGCCAC 59 NA Rattus norvegicus 81 RGD1563482 ENSRNOG00000001073 ENSRNOT00000077803,ENSRNOT00000001421,ENSRNOT00000030251 1 3 3 80 12 37680956 37682694 ATTGTAGTCAAGTGCCACC 58 37680894 37680912 ATCCACTTTCTCCTGGAGG 58 NA Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000006162 3 1 2 80 3 1801828 1801848 GAACGTCTTTGACTTTGTCAC 58 1790823 1801787 AAGTTGATGAAGTTGTTCGC 57 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 1 2 2 86 8 85513345 85513366 GACATACAGCTACTAGAAGCCA 60 85513412 85518614 CTTAAATGCCTGCAGCAGAG 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 3 2 2 81 4 165427475 165427495 AAACCTGTGGCTGTATATGTG 58 165427334 165427432 TCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163 2 4 6 82 9 17344345 17347173 AGAAAGCCCATGAAGTGGT 59 17347219 17347237 GAAGATGTCCACCAGGGTC 60 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 1 2 2 93 6 143901379 143909833 TGGAGATGGAACAGTTGACC 60 143909889 143909907 CTGTACAGCCTCTGCTGAG 60 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 1 3 5 97 20 5416879 5416898 TTATGTTGTCCTTGGAGCTG 58 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Prrt3 ENSRNOG00000009863 ENSRNOT00000013154 2 1 2 81 4 145453537 145453557 CCTGATCTCCTAAACTCTGCT 59 145452627 145453494 ATTCCTCGGCTTCATCTGG 60 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000087344,ENSRNOT00000017108 3 2 4 80 7 120534779 120536150 TCAGCAAGCTGATTACCAG 58 120534717 120534737 CTTGTATGAATGGGAAGTGGT 58 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000067135 3 1 2 188 13 69962610 69984343 GCTTGTGGAGAACGTATGG 59 69949037 69949055 GATACTCCAGCAGCTTCTG 58 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000067176 1 1 3 81 12 41202607 41203217 TGTCCTAGCATACCAGTCC 58 41205301 41205319 TTCGGAGATGAGGATGGTG 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 3 2 3 81 12 41202605 41205271 GATGTCCTAGGTCATGTTAGC 58 41205314 41205332 CCAGGGAGATACATTCGGA 58 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000065058 1 1 2 87 9 100942926 100942944 TTTGAGGCAGACCTGAAGG 60 100942995 100943160 TTTCTGACTCCGACTTGCT 59 NA Rattus norvegicus 81 AABR07014087.1 ENSRNOG00000047582 ENSRNOT00000073211,ENSRNOT00000052336 2 2 2 80 14 783848 785631 ATGAGACAGCAGATATGGAGC 60 785673 785691 TTTGGAGGCAGTAGGTCTG 59 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817 1 1 2 82 4 7301399 7303968 GTACAGAGGTCTATGGCCAG 59 7301054 7301072 TACTCAAAGACTCGGGCTC 59 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935 1 1 2 80 3 122148171 122150134 AGGTACAGTCTTTGATCCAGG 59 122150176 122150194 GCTTCTTCTCTTTGGGCAG 59 NA Rattus norvegicus 81 LOC100911746 ENSRNOG00000002462 ENSRNOT00000003402 1 1 2 101 10 49025009 49027503 GTTCACAAGCTGGTTCATGG 60 49027794 49027812 AATCCCTGAGAGCGAACAC 60 NA Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 1 2 2 80 10 87299291 87299309 CTGACAATGCCAATGTCCT 58 87298772 87299250 CTTCATTCTCATACTTCAGCCT 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 3 3 3 80 6 76502625 76511221 TATGAAATGGACAAGAGGTTGG 59 76502566 76502587 TAGTGTCTTTAAAGGTAAGGCC 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000091163 1 1 3 80 10 74512016 74517379 TTACATAAGAAACCGCTCCC 58 74517422 74517440 ATGATGCCATGTGTCAGAG 58 NA Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 1 2 2 80 14 79872217 79877485 TCGACATCCTTGAGGTCAG 59 79877527 79877547 TTATGACTGTTGTCACCTTGC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 2 3 3 80 4 22104869 22106910 GTAGCTGTGATCATGCTCCT 60 22106953 22106971 CCGTCTCTAGGAGCTTCTC 59 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000022382 2 1 2 97 1 277068811 277068829 CGTGTTCTGCTGCTAATCG 59 277080071 277093137 TTGGACTGGCATGGATCTG 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000091460 2 1 3 80 12 41361454 41361472 AAAGAAGCAAAGGAGTGGC 59 41361514 41363035 TACTACTGGTACTTTCGGCTG 59 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000082904 3 1 2 80 9 20112180 20112200 GAAGTGAGTACAGTTCAGAGC 59 20111968 20112140 TATTGTTAGGTTGGCTTGCTG 59 NA Rattus norvegicus 81 Emp1 ENSRNOG00000008676 ENSRNOT00000011580,ENSRNOT00000079785 3 2 2 85 4 169161725 169175824 TGGATACTCCAGAATTCTCTACTC 59 169175868 169175886 ATGTGGACCACGAAGAGAC 59 NA InUTR Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000008677 2 1 2 81 4 39532674 39533455 GTACTCATGATGCAAGTTACTG 57 39533496 39533515 CAACATACTGGTACCTCTCC 57 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 2 1 1 100 9 24509680 24509700 CTTGTCCAAGAAACTGTACCA 58 24506363 24506383 ACCATACTCTGGATAACTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045020 3 1 5 80 2 258794924 258800047 ACCCTTAATCAAGGACATTCAC 59 258794865 258794886 GTTGAAGTTACCATTTAGCGGT 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905 2 2 5 80 2 258868228 258932039 CGAATACCGAAGGTTTCAGC 59 258868167 258868191 CTATAGAATAACCTTCACAGGACAG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000088023 1 1 6 80 12 41233227 41236125 CTATGATGTCCTGTTTGCCC 59 41233166 41233184 CTGATGAGGTAGGCGTAGG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 2 2 6 80 12 41262183 41262202 CTGTACTTCCTGAATTGGCG 59 41230422 41262142 CTCCTTACACAGTTGGTACCA 60 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 2 2 2 84 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932494 204938631 TTACGCTATGCACCTCAGAG 60 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000023020 1 1 2 89 1 219092508 219104774 GCAATCTTAAAGATGAGGTCCTG 60 219113745 219113763 CAGAACCATTGCTTCAGCC 60 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000044255,ENSRNOT00000086460 2 2 2 80 13 68754397 68756585 TTGAAAGCAGAAGTACCACCT 60 68754337 68754357 GCGTTCAAGTAGAATGGACAG 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 1 1 2 80 9 82379876 82380054 AGGGACATTGTGAACTTACTG 58 82379816 82379835 CTTGAGGAAGACATAGGTGG 57 NA Rattus norvegicus 81 Grip2 ENSRNOG00000009726 ENSRNOT00000049657 1 1 2 80 4 123614503 123614522 AGTTCGACTGGAGATCTTGC 60 123614562 123615225 TCACTCCTCTGTATTCTCACTG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 3 3 4 80 14 79355837 79387344 CTTCACAAGGAATTTGCTTGC 59 79387385 79387404 TTTCCAAACAGCTTCCATCC 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 2 3 4 80 14 79355781 79355799 GTTGCTGAGACTGAGGAGG 60 79355840 79387348 TCTAGCAAGCAAATTCCTTGTG 60 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 2 2 2 80 8 56236903 56239226 ATGTTAGGGATAACTGGCTCC 59 56239268 56239286 AATGAGTGGGTATGGTGCC 60 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098 3 1 2 80 10 56852869 56852888 TGATGTTCAGAAGTCCTGTC 57 56852699 56852827 TGTCCTAGAGGTACCATGTC 58 NA Rattus norvegicus 81 AABR07065798.1 ENSRNOG00000042996 ENSRNOT00000044966 3 1 1 69 6 141715824 141715842 AGTTGTTGCTAAACTGGGT 57 141715643 141715661 TCTACCAGCTTCACCTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000090638 2 1 6 192 1 41635494 41635512 TTTCAGACCTACACTGGCA 59 41635319 41635338 AGATGCTGACTCAGGTCTC 59 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000021758 1 1 2 80 9 111608032 111608050 CAAGGACAAGCAGCAAGTG 60 111608090 111618870 GTCTTTGTGACCTTGATCATCTC 60 NA Rattus norvegicus 81 Zfp280d ENSRNOG00000055631 ENSRNOT00000089335,ENSRNOT00000090047 1 2 2 80 8 78892863 78892883 AGATGCCTCTTCTGTAGTCTC 59 78892923 78893340 CAATTTGTACCTTGTGATGGC 58 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884 3 1 2 93 4 68814496 68819243 TTCTGCTGTACTTCTCACAG 57 68814094 68814112 AAATCCCAGTTGTTGGGAC 58 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000045532 2 1 4 83 2 18531192 18544070 CAAGACAGGTCGAATGAGTG 59 18531128 18531146 TCTTCACTGCAAGGTTCCT 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 2 1 1 60 8 109456215 109456233 CTTGCCTTACTTCCGACAG 58 109476796 109476815 AGGATCTTGAAGCAAATGCC 59 NA DesignNoJunction Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 1 3 3 85 7 107198092 107203731 AGTTAAAGTGGTTGGATGGC 59 107198026 107198045 GATTTGCTGTTCAACTGCTG 58 NA Rattus norvegicus 81 AABR07002741.1 ENSRNOG00000045673 ENSRNOT00000071029 1 1 2 80 1 83051445 83051463 ATACCAGTGTGAGGTCTCC 58 83051506 83059288 TTTGACGGTTGATAGAGCAC 58 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000078874 1 1 3 80 19 15209048 15212168 CTGCTCCTGTGTTATCTCC 57 15212212 15212230 GAGCAGTATTGAGGGACAC 58 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000078874 3 1 3 82 19 15209046 15212167 CTCTGCTCCTGTGTTATCTC 58 15212212 15212230 GAGCAGTATTGAGGGACAC 58 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366 3 1 3 173 6 3373055 3444295 CTACAAGGCACGGAATGTC 59 3345401 3355250 ATCCAAAGTTTATCTCGCCTG 59 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000075678 1 1 2 84 7 119702370 119702388 AATAGCTCTGGGCAACAGG 60 119702301 119702321 TTAGAGTCAGGACAGGCCT 60 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099 1 1 2 80 1 178911763 178924161 TGTCAATGTGAGAGCAGCA 60 178924204 178924223 CCCATCATGGTTAGGAAGGA 59 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836 2 1 2 81 5 151449081 151449099 TCTCCTTGTGGGATCATGG 59 151448840 151449038 CCATAACTACTGCCAGTACCA 59 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000090844,ENSRNOT00000060284 2 2 3 92 7 14541374 14544178 GAGATTGAATGGGACGACCT 60 14544233 14544251 GGAGATGACTGTGACTGGG 60 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000082462 2 1 2 81 12 38514411 38516437 CAACAACTGGCCTCTTCTC 59 38514348 38514367 ACTGAGACCCAGTATCATGC 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 1 3 3 80 20 5111581 5112181 TTCTGTGAGGTGGATGAAGAC 60 5111521 5111539 TTGTCGATAGTGAGGCACC 60 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 2 2 2 81 5 135363564 135366388 ATGCAGTAGGTGGATACACG 60 135366430 135366450 GTATCGAAACGCTCTACACAG 59 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 3 2 2 81 5 135363565 135366388 TGCAGTAGGTGGATACACG 59 135366432 135366451 GGTATCGAAACGCTCTACAC 59 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000047741 3 1 2 80 11 30393205 30393626 CCACATCAGCAGGAAATGG 59 30393143 30393162 TCTCGACTTTCTGCTCTCAG 59 NA Rattus norvegicus 81 Tmem53 ENSRNOG00000019186 ENSRNOT00000025990 1 1 2 61 5 136112519 136112537 GCTGGATTACAGCATCGAG 59 136112562 136124439 CACCTTGGCTGTTCTTCTG 59 NA DesignRelaxed Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000082422 1 1 2 80 13 83865737 83869783 TGGTGAGGAGAAATCACCA 58 83865675 83865694 TGGAGCTTCTCAATCAGAGG 59 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 2 1 2 89 2 118990961 119007790 AATCAGATCCAGGATGCTCG 60 118989247 118989265 CATTTGTATTCGGCCCACG 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 1 2 2 80 1 83113465 83114891 CATGTCACAGAGAAAGTCCA 58 83114933 83114952 TTTGGTACGATCATCAAGGG 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000057036 2 2 3 80 12 46413625 46414614 GTGTCACAAGATGGAGCAG 59 46413563 46413581 ACCTCCTTCTGACTAAGCA 58 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 1 2 2 80 11 27237362 27237382 TAAACAGCACTGCCAAATAGC 60 27237423 27250680 AGCTCCTTCTTCCTTTCCTC 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386 3 1 2 95 1 239442200 239442218 CATCGACAGACTCATTGCT 58 239442277 239443446 CCGTTATCTGCAAATGCTG 58 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000087439 3 1 2 81 3 46812778 46812797 TCTCCTGTATCTGCCTACCA 60 46809622 46810529 AAGGACTCTGCACCTTGAG 59 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678 3 1 2 144 7 143784235 143784619 GTTACACGTGGATGCTGAC 59 143783801 143783819 TTGCTGGAAGAGGTAGCTG 59 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 2 2 2 80 14 7230173 7230739 TTGCTGTCTTATGCTTGCG 59 7230111 7230131 AATACTTCATCACCGTGTCCT 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000065535 2 2 3 91 11 31116613 31117710 GAATTTGGAGGTGTCGGAG 58 31115540 31115559 TTATCTTTCCGTGCTGTTCC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000008734 3 1 3 104 3 129599377 129599398 GGGATGGACCAAATCAATAAGG 59 129599460 129779771 GGATTTAAGCTTGTTACAGGGA 59 NA Rattus norvegicus 81 Itsn1 ENSRNOG00000002001 ENSRNOT00000047843 1 1 2 80 11 32001664 32002480 GGAGATATAGTCATGGTTAAAGGG 58 32008824 32008842 CTTCAGTTCTCCTCCAAGC 58 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000066244 1 1 2 120 7 117667101 117667201 CTCTCCGAAGAGAACAGCC 60 117666922 117666940 CAAAGGTTGTCACCACCTG 59 NA Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 2 2 2 80 1 126964878 126969655 TAGTGGAACTGGGTGATCTG 59 126969911 126969930 TGGTCACAGGGTTTCTTAGG 59 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 1 2 2 87 8 117318881 117318900 GTCACAACCAGTGTTCAACC 60 117318950 117324009 GTACCTGCACCTGTACCTG 60 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 3 2 2 94 1 99534186 99534204 CTACATCAGAGGTGTGGTC 57 99537449 99537467 ATTACTCTTGATGCGTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829 3 1 2 80 19 17024134 17045086 CAATGTGTATAAACTGAGGCTC 57 17024075 17024094 TAGAACTCGTCATCTTTGGG 57 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 1 3 3 80 3 134293428 134293450 TATTATCTAGCCGAGATGTACGC 60 134292330 134293391 GACTCCTTTATAAAGCTCCACG 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 1 3 3 82 20 4532690 4532708 TATCAGTGCCATCAAGGCT 59 4532752 4533422 TCTCTGGGTCCTTTAACTTCC 59 NA Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 2 2 2 82 9 41007335 41007353 TACAAGCCCTCACAAACAC 58 41007398 41008032 TTGCCACAGATTTCCTTCTG 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834 2 1 2 87 3 119712144 119712163 CCACCTTTACCAGTACCGAG 60 119712445 119718067 CCTGTACTCTGTATCCAGCTG 60 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 1 2 2 92 13 89300245 89300760 TGTCCAAGAGTTGTTCGCA 60 89300171 89300189 TTTGTCTCACAGCTCAGGG 60 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 2 2 2 93 13 89300246 89300761 CTGTCCAAGAGTTGTTCGC 59 89300171 89300189 TTTGTCTCACAGCTCAGGG 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853 3 1 3 85 12 44076250 44103308 CATCGCAGGGAATTCTTAACG 60 44103354 44103373 GGCTTGTATTCTTGCATCGT 59 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000016104 2 1 2 81 8 59239858 59239876 TATGCCTGACAGCAGAGAC 59 59222512 59239816 AATTAAGGAGCTGGTTTGTGAG 59 NA Rattus norvegicus 81 Trpv5 ENSRNOG00000015394 ENSRNOT00000020975 2 1 2 80 4 70965721 70967971 CCAAGAAGAAAGAGGCTCG 58 70965659 70965681 GTCCATATTTCTTCCACTTCAGG 59 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 1 2 2 90 10 56826114 56826218 TCTGTCAGGCTTCCTAAGG 58 56826272 56826290 GTAGATGAAGCTGCCAGAG 58 NA Rattus norvegicus 81 Zzz3 ENSRNOG00000050321 ENSRNOT00000080993,ENSRNOT00000071770 2 2 2 80 2 257660764 257660787 GTGTACATGGATGAAGATGATGAG 60 257660826 257664992 TTCTTCATCTGAGGCCTCC 59 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690 3 1 2 108 7 55151697 55151715 AGACGCTCTAGTACCAGAG 58 55151784 55157086 TGCAGTTATCTTTCCTGATTCC 59 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000049624 2 1 2 82 19 22281734 22281753 GGAAGAGGGACTCATGTCTG 60 22179570 22281691 GTTCATAAACTGAGCCTGAGC 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673 2 1 2 80 9 42881161 42881181 TACAAGTTCATGAAGGAGCGA 60 42881220 42881521 GATCTTCCACAGGTTAATCTGC 59 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000063781 1 1 2 81 9 43004383 43004402 CCATTGTCCGAAATATCCGT 58 43004242 43004341 TCGATGTCCATCATTATCGTC 58 NA Rattus norvegicus 81 Lman2l ENSRNOG00000015699 ENSRNOT00000063781 2 1 2 81 9 43004384 43004403 GCCATTGTCCGAAATATCCG 60 43004243 43004343 CGATGTCCATCATTATCGTCAG 59 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643 1 1 2 84 8 29525124 29714297 TGCAAAGTCAGGTGTACCA 59 29714345 29714363 TGTCATTCCCAGCGTAGAG 59 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 2 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244774 GAATCCGGTCTCATAGCCT 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 3 2 2 85 9 15610530 15610548 CTTTGGCCTCAAGAACCTG 59 15610594 15618405 TATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413 3 1 2 110 11 38088744 38091021 ATTGAACTCAGGGTCACCTC 60 38088653 38088671 AAGTTGTAGCCACTGGGAG 59 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 96 9 44493705 44493943 CTGGGACTACAGAAGGCAC 60 44494003 44494021 GCTGGATGCGTATCAAGTG 59 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 1 2 3 80 1 169454327 169455688 GGAGTATAAGGAGAAGCTGC 58 169454266 169454285 AGGTCATCTTTCCAGTTCTC 57 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000088589 3 1 3 96 3 43293237 43294087 TGTTGACACAGTATAGGATGGT 59 43294144 43294162 AGCATTATAGGCAGCGGAG 60 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 1 2 3 80 9 100574812 100575899 TGCCAAAGGTTCACATTGAG 59 100574751 100574771 GGGCTACATTCACATCTTCTG 59 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000028277 1 1 2 87 10 89978045 89978063 GATTCCGGGAAGTACTGGT 59 89978114 89987406 CAGGAGAAGCTGGAAAGAC 58 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000074889 1 1 3 80 14 5938302 5941745 GAAATTGATCCCAGGACTGG 58 5941788 5941806 TCATCCAGACAAGGTACCG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877 3 1 3 82 14 5928847 5928865 AGTCGTGGCTATTGTTGGA 59 5928911 5928933 GCATGCCACTGTGATTCTG 60 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000089895 3 1 2 96 7 137290342 137290363 TGAATATCACCTGTGAATCCTC 58 137294512 137303370 AACAATGTAACCCACACTCC 58 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 3 4 4 80 3 152573080 152573098 GTGAGCACCTTAACCTCCT 59 152573142 152573684 GGTCCAGCCAATTCTTCTG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000079962 1 1 5 80 7 80750782 80777747 TACACTCTGATCACCACACG 60 80777789 80777808 GAAAGATTCTGGCTCCAGGT 60 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327 2 1 2 82 1 71389669 71400184 GTATTCCTGAGGTGCTGGT 59 71389605 71389624 GACAGATTCTCCTGCTTCAC 58 NA InUTR Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 3 2 2 80 10 94620082 94620100 CAGACTTTGTCATCAGCCT 58 94617067 94620039 GATGGTGTATTCTGTCCGTC 58 NA Rattus norvegicus 81 Ddost ENSRNOG00000015079 ENSRNOT00000067228 2 1 1 80 5 156674748 156675342 CTGACTTGGTGGAGTATAGC 58 156675385 156675403 GCTGAATGTCATCTCCGTC 58 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000032224 ENSRNOT00000040210 3 1 1 70 2 198412293 198412311 GAGGAAAGGGTGGTAAGGG 59 198412241 198412259 GATGTTATCCCGCAAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif5b ENSRNOG00000023356 ENSRNOT00000035785 1 1 1 80 9 44698756 44698775 CCGAGTATGACTCTGATGAC 57 44698817 44699835 GTCGTCGTTTCTCAATTCTC 57 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310,ENSRNOT00000081033 1 2 2 80 14 73898778 73898799 TCAAGTTTGGGATATAGGAGGG 59 73898840 73909958 AACAGGATTCCCTGTGCTC 60 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310,ENSRNOT00000081033 2 2 2 80 14 73889422 73893653 CCGGGAAGACTTCCTTAGC 60 73893693 73893715 AGAAATCCAGTCCTATAGTCTGC 60 NA Rattus norvegicus 81 Rab28 ENSRNOG00000017074 ENSRNOT00000041310 3 1 2 80 14 73954890 73961111 CAGTCACAGCGTATTGTCAG 59 73961153 73961172 TCTACTCTGAGCAGAGTTGG 59 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325 3 1 2 85 1 68436601 68436940 CACCAACAATCGACTTCAGC 60 68436983 68437006 CTTTGGCTAAATCTACCACATCTG 60 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000012417 2 1 2 99 2 166423453 166423473 CCAGAAGACATCTGAAATGGA 58 166423532 166424758 CAAATCAATTCCCAACACCAG 58 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 2 2 2 80 8 36235133 36238683 CCTTGACTGTCAATGGACC 58 36238727 36238745 ATTTGATCTGGCCCTTCTC 57 NA Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000042077 1 1 2 88 19 21554212 21554230 AAATTCCAGAGGACCCGTG 60 21554282 21556889 AGTACATTGAGTACCGGCC 59 NA Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000089827 1 1 2 86 13 84617803 84618275 AAATCCAGAAATGGAGTCCC 58 84617736 84617755 AATTCCTGGATCTCAACCTC 57 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631 3 1 2 80 5 156549238 156549257 AGCCATTACTTCCTGTTGGT 59 156549298 156554619 AGTCCAACTTCATTTGTCTGC 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859 2 1 3 89 1 217617545 217618977 AGTCCCAGCAAGACTATGC 60 217613780 217613799 CTTCTTCAAAGGTGGATGCG 60 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 2 2 2 80 8 50073571 50074248 TGGAAGAGGTCTCTGACGA 60 50073509 50073527 AGTCATCCATGTCGCTGAG 60 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000050330 1 1 2 83 2 247333492 247349538 CATGCAGGGATTCATTTACCC 60 247351500 247351518 TCATCTGAGTCAGGAGCAG 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000050330 3 1 2 86 2 247333492 247349538 CATGCAGGGATTCATTTACCC 60 247351503 247351521 ACGTCATCTGAGTCAGGAG 59 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000005958 3 1 2 80 7 83501694 83502114 CAGCAATTGAGATAAACAGAGG 58 83502155 83502173 TGCGGTATCCTACTCTTCC 58 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000037662 2 1 2 80 8 118402980 118402998 TCATGAGGCACGTGATCTC 60 118405412 118408118 TCTTCTGGTCTTCCAGCAG 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305 3 1 2 84 8 118393173 118393794 AACATCGTGCAAGTGAAGC 60 118393842 118393860 CAATGCGCCTCATGAAGTC 60 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367 1 1 3 80 14 10897135 10897153 CTTCAGCTTATGCACTGCC 59 10900795 10902044 TCTGAGGACCTTCCAATACAG 59 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 1 2 2 80 10 59753210 59753322 CTACATCCAGGAGGAGTTTCTC 60 59753151 59753169 TGTAAGCTGAAGAAGGCGT 59 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641 1 1 5 80 13 34489089 34489107 CCTCATCCTCAGGTTCCAC 60 34489150 34491431 TGGCAGTACCGTCTAATGAC 60 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907 1 1 2 80 2 137395579 137396764 GTATACTTTCCTCACCAGATCCA 60 137394098 137394117 TCCTCAGGGAATATGTGCAG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 1 2 2 80 7 2558236 2558470 GGAGATATGGGTGGAATGG 57 2558174 2558192 GAGACTGTAAGGAGCTGTG 57 NA Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000087579 2 1 2 111 3 167989578 167995639 ATTCTTTAGGCACAAGGACG 58 167989486 167989504 CTTGGAACTCTTGGCTGTC 59 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 1 2 2 80 1 71687041 71687059 TGGACAAAGGGATCTCCTC 58 71680854 71686997 AACAGTTGGCTAACACCAG 58 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 2 2 2 80 1 255063272 255063290 ACCCACAAATCGCTATCTG 58 255063332 255067144 TCTTCATGAGACCCTTTACCA 59 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 3 2 2 80 2 180118950 180123367 AAAGCAAAGCGGTGAATCTG 60 180123410 180123428 TGGACACAGAGAAGTTCCG 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000019673 2 1 4 97 9 46997835 47012473 CCATCCTGGAGAATATGAAAGTG 59 47022725 47022744 CTCATTTGGATACTCCGTGC 59 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000082267 3 1 3 93 3 176486525 176486543 GGTTACAAGCAGCAGTCAG 59 176487425 176488637 TACTGCCAACTCCCTTCTC 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 1 3 3 86 5 154391238 154392156 TTTCTATGTGGTGCTGGGT 59 154391170 154391188 CTGATTCTGTGTTTGGCCC 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 2 2 3 93 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390865 154391143 TGATGCCATCATACTTCTGCT 60 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 3 1 1 73 13 26768568 26768586 TGGATCCAGGATAACGGAG 58 26605743 26605761 AAATCAAACAGAGGTCGCA 58 NA DesignNoJunction Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 2 2 2 83 10 91098712 91100969 TACTTCCTCCGAGGGTACC 60 91098647 91098667 GTGCTTCATGTACTTGAGCAG 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000085698 2 1 2 81 5 75211364 75211383 CAGAAGAAAGCATAGTGCCC 59 75210176 75211322 CATTCGTGAAAGACCTGACTG 59 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 1 2 2 80 20 50447315 50448805 CCTAAAGGGAAGAATGAAGGT 57 50448844 50448865 TCAGGAGAATCTATAAAGGCAC 58 NA Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 2 1 1 64 14 72889365 72889386 TGTGAAAGGCCAATTTCATGAG 60 72889686 72889704 ATCTGCATAGGACTGTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 3 2 3 80 2 210782027 210782045 TCCCGACTATGACAGAAGC 59 210781678 210781986 TCAATTAAGTAGGGCAGATTGG 58 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000080174 3 1 5 91 20 4806712 4806730 ATGACATGCCAGAGGACTC 59 4806535 4806554 CTGACACAAATGTGAGGCC 59 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980,ENSRNOT00000026569 2 2 2 80 14 83911562 83915177 CATTGATGAAGTGATTGTCCC 57 83915218 83915237 GCAAACTTCTCCACATTGTC 58 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000004699 1 1 2 80 10 96206468 96206488 TAATGGAGCACAATGTGTCCT 60 96204363 96206426 GGTGTTTGGTCATAAGCCC 59 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624 3 1 2 92 1 99949752 99949771 TGGCTGTCATCAGTAGATCC 59 99948834 99949703 CATGGTAATAGTTGCTATAGCAGTG 60 NA Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 3 2 2 80 X 32077238 32078733 CCTTCAAAGAGATCAAACCGT 59 32077178 32077198 TGTAAGAAGGGTACACTTCCA 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 1 2 2 60 16 47206974 47206995 ACAAGCTGGATACTAAATACCC 58 47181428 47181447 TTGTTCATGATGGCGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000082138 3 1 2 90 5 157899480 157899498 TCCTAACCTGAACCAGAGC 59 157899550 157900279 AGTTTCAGAACTCTCCAGGAC 60 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 1 2 3 80 8 96132535 96132553 CAGACATTGCTTGATGCTG 57 96129137 96132491 ATACTTCCTCTGACCTGCA 58 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 1 1 3 80 20 4789700 4789718 AGCTGTGATCATTGGAGCT 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000091344 3 1 3 81 20 4696040 4789684 AGGAAGAGAAACACAGGAGG 59 4674756 4674774 GGGACACATCAGAGCTCTG 60 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 1 2 2 81 8 129242677 129242698 AGGCAGACATCAATACAAAGTG 59 129242739 129242837 TCTGTCATCTTGGCTTTCCT 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 1 2 2 80 16 56317718 56326672 GGACGGATGTTCATATTCGAG 59 56326714 56326732 CAACCAGCGACACTAAGAG 58 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000085300 2 1 2 139 16 56385938 56385956 AAGCAGCAACTTCCAAAGG 59 56388507 56389756 AAGCAGATACCTATATGGATAGCC 60 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 3 3 3 80 10 82234806 82236146 TGTACCAGATGTGTTTGCAG 59 82234745 82234766 CTAGAAGACTTCTTAGCCACAG 58 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 3 2 2 81 8 23145984 23146003 TGACTTCATCATGTCCCTGG 60 23145734 23145940 AAAGGTCTCCTGGAACCTC 59 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 3 2 2 80 14 86146442 86146639 ATTCAAGGAAGCCTTCAGCT 60 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 3 2 2 80 9 61331913 61331931 GTGGCTGCAAGATATGGTC 59 61324126 61331869 ATGGATTCCACACTTGGCT 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 2 6 8 103 20 4363557 4363723 GGAAACTGAACACAGGAAGG 59 4363788 4363807 AAGGAGGAGTGAACCATTGG 60 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000060673 2 1 2 81 2 45230086 45230106 TCCGGATTACTATTTCACGTG 58 45230149 45240925 AGAGGGTATGAGAAGGCTG 58 NA InUTR Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 3 2 2 82 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422288 126422309 GGAGCTCTACTTCTTTACACTG 58 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 2 5 8 80 20 4389074 4389092 ATGGATGAGCACAATGTGG 58 4388924 4389032 CTTCAAATAGTCCGTGTCTCC 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 2 2 2 80 5 78315657 78316109 ACTTATCTGTACAGCAGGCC 60 78315596 78315614 GTGAGCAGGGATGTACTCC 60 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000077719 1 1 2 81 1 72881332 72881350 GCCCTCTAAAGTTCTGGCT 59 72881393 72882801 CTGAGGACACTCTAGAGATGG 59 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595 2 1 2 80 2 49158334 49158357 GAATAGTACAGTGGAAGAAGACTC 59 49155701 49158295 CCGTCATAGTTCACCTGTC 58 NA Rattus norvegicus 81 Hsd17b12 ENSRNOG00000009630 ENSRNOT00000047571 3 1 2 82 3 82926014 82926032 ATAAGCCCTCTGCAGAGAC 59 82925948 82925968 GCGTGGATCATATCCAGTG 58 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000072577 1 1 2 83 2 34547130 34559269 CTTCATGGACTGGTGTCCA 59 34559314 34559334 GGTCACAGAAATTGTTCTGGA 59 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997 3 1 2 80 2 34396478 34402948 TGGAGTTTCAGATCTCACAG 57 34402990 34403009 TTGATTGGTGGTAAGGAAGG 58 NA Rattus norvegicus 81 Fam102b ENSRNOG00000027540 ENSRNOT00000039225,ENSRNOT00000090561 3 2 2 80 2 211786170 211787027 CCAAAGTATCAGGGTATAGCA 57 211786110 211786131 CTACTGAGGTATTTCTCCTGTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279 3 1 2 89 3 176854409 176854928 TCAACTGCCAGAAGGAGAG 59 176854981 176854999 CTGATTCAGGTGCTCTCCA 59 NA Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485 3 1 2 82 20 50487172 50516378 CCAGGATGATTCCAAGATGC 59 50487109 50487127 CTTCTTTGGCTGAGGAGGT 59 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000036365 1 1 2 97 20 47547284 47547306 CAAAGTATACAGAGGAAGGAGAG 58 47547363 47558620 AACTTCAGCTCTACCTCGG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330 1 1 2 80 16 74327612 74327630 CTTCCACTTCCTGCAAGTC 59 74322815 74327569 TCAATAGTGAAGCCACTCAC 58 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000050637 3 1 2 80 16 74550736 74551229 GTAAAGAATGAAGGAGGATACAGAC 59 74551266 74551285 AGAAAGACAGGTCTTTGGCT 59 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353 3 1 2 92 3 80411693 80414303 TAAGAAAGAGGGTGGACCTG 59 80414358 80414376 CATTCAGCATCATGCCCAG 59 NA Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 1 2 2 91 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697028 74697046 AGTGGAAACCCACTGACAC 60 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680 1 1 2 103 5 164690289 164691762 ATGATCAGGTTCAGCGTCC 60 164690204 164690222 AACCATGGAGACCATGAGC 60 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 2 3 3 80 5 59630464 59630482 CCGTCTGTTACATCCAGCT 60 59624446 59630420 GTTCCTTGATGGAGCTGGT 60 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 1 3 3 80 5 59621207 59621225 ACATTACCTCCGTCAGCTC 59 59620030 59621166 TGGATAAGGTACTCCAAAGGAC 59 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113 2 1 2 80 3 171774089 171780656 GACAAGAACGACTGCTATCG 59 171780698 171780717 TCAAAGTTGAGAACGTCTCC 58 NA Rattus norvegicus 81 Rps6ka1 ENSRNOG00000042411 ENSRNOT00000077248,ENSRNOT00000068634 1 2 2 80 5 152094992 152095701 CCTGAAAGATGTGTATGACGAC 59 152094933 152094951 ATCTTATCCAGCAGCTCCC 59 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 1 2 2 91 16 80751529 80751549 TGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000090646 3 1 3 86 16 74799215 74800687 ATTATGGGCCAGTCAAAGAC 58 74801364 74801382 GCTTGAGGAAGAGCTTGTC 59 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 1 1 1 99 16 75400907 75400925 TCTGTCTCCTTTGAAGGCC 59 75401575 75401593 CTTTAGGTCCGCAGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 2 1 1 100 16 75400906 75400924 GTCTGTCTCCTTTGAAGGC 58 75401575 75401593 CTTTAGGTCCGCAGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000057310 1 1 2 173 16 90341679 90341700 ACCTTCCCACTCATCTATACTG 59 90345834 90345856 TGGTTGAAACTTGTTTGTCTCC 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000091265 2 1 2 115 3 80855393 80875680 CAGACACAGAAAGCCATCAC 59 80855297 80855315 CTCCAGTCCACAGTACTCC 59 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000089065 1 1 2 95 3 64362879 64363033 TGAGGAGATCCTTTGGCAG 59 64362802 64362820 GTTTGATGTCCAGCGAAGG 59 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429,ENSRNOT00000079672 2 2 2 80 3 65864531 65869283 ATTTAAGCCACCAAAGGTTACC 59 65869323 65869342 ATATCCAGGCAGATGACTCC 59 NA Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360 2 1 2 80 3 79980388 79980406 TCAAGACTCTGTCATCGGT 58 79980050 79980347 CCTGAACTGTTACTCACTTCAG 59 NA Rattus norvegicus 81 U1 ENSRNOG00000059291 ENSRNOT00000088361 1 1 1 60 5 22830845 22830865 GGAAGACACTGTGATCATGAG 59 22830805 22830825 TTGGTGTGCAATAGGTAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058638 ENSRNOT00000086855 2 1 1 60 2 181786388 181786407 CAAAGAGGACAACCTTTCCC 59 181786429 181786448 CTACTCGCTATACCCTTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012582.1 ENSRNOG00000060042 ENSRNOT00000084190 3 1 1 66 2 198360390 198360409 GCTTGTTGAGTTCTTCGTCG 60 198360438 198360456 AAGAAGACCCGCATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013911.1 ENSRNOG00000049917 ENSRNOT00000071149 3 1 1 70 2 262679216 262679236 CATGAGATCTAGCTGTAAGGC 58 262679166 262679184 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059464 ENSRNOT00000080601 2 1 1 60 2 161559621 161559640 ATGAAGAACGCATCTAGCTG 58 161559662 161559681 TGTCCATGATCAATCTGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561558 ENSRNOG00000053609 ENSRNOT00000086804 1 1 1 60 X 158261528 158261547 AAAGAAGTATGAAGCCCTGG 58 158261487 158261506 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD38 ENSRNOG00000057993 ENSRNOT00000086480 2 1 1 60 5 136021261 136021283 GATGAGAACTTTGTCCAGTTCTG 60 136021223 136021243 TCCTCAGATACACTTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008300.1 ENSRNOG00000039481 ENSRNOT00000060511 2 1 1 68 2 52658355 52658373 CTGAACACCGAGACTTGTG 59 52658301 52658319 TTCTTCTCCAGTTTCGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057918 ENSRNOT00000087318 3 1 1 60 2 79604303 79604321 GTGCATCAGTAGGTAGCAG 58 79604261 79604279 CAGGTCAGAACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056607 ENSRNOT00000087060 1 1 1 60 2 263540959 263540977 TATGGCTGTGCATCCTGTC 60 263541000 263541019 GAGCATTGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060003 ENSRNOT00000086700 3 1 1 60 5 105094239 105094260 CTCACAGATTCATCAGTACTCC 58 105094280 105094299 GCTCAACAATCCATCAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107597.1 ENSRNOG00000054617 ENSRNOT00000088311 3 1 1 60 8 70269216 70269234 TCTCAACAGTTCGCTTAGG 57 70269174 70269193 TCCCTTGTTATTGTGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061846 ENSRNOT00000090482 2 1 1 60 5 102142997 102143018 ATGAAGAGAAGATTAGCATGGC 59 102142958 102142977 GGAACCCTTCACAAATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056394 ENSRNOT00000082360 3 1 1 111 8 80501359 80501377 CTCTTTCTCCCATTGGACG 58 80501266 80501284 AATCTGGCTCTGTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057457 ENSRNOT00000090196 2 1 1 60 8 71502930 71502951 GAGATGCCATGATATTGAAGGG 59 71502891 71502912 ATCCAGAGTGCTATGAATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054944 ENSRNOT00000090284 2 1 1 60 5 101849473 101849491 CTCAGTTGAAGAGGACGAC 58 101849431 101849451 TATACCCTTGACCGAAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hammerhead_HH9 ENSRNOG00000051617 ENSRNOT00000086203 2 1 1 63 5 59378593 59378611 GTTACCTGCAGCTGATGAG 58 59378638 59378656 TTAAGCCAGTACTGCAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054745 ENSRNOT00000079195 3 1 1 73 11 34658378 34658396 TACTTGGCATGGGAGATGG 59 34658433 34658451 ACATCCAGAGTGCAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058113 ENSRNOT00000080814 2 1 1 60 2 210827407 210827428 CATACCCTAGACGTGGATACTG 60 210827449 210827467 TTGCAATCATAGGGAACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051550 ENSRNOT00000086050 3 1 1 60 16 77847858 77847879 TGTGTCAGTAGAGAAGTGAGAG 59 77847819 77847843 CAGATGTTCATAGGTCAGAATACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044353 ENSRNOT00000069620 1 1 1 64 8 67470140 67470160 GAATGCTCTCAACCTCATCTG 59 67470186 67470204 CATCCGAGTACCAACCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026517.1 ENSRNOG00000049013 ENSRNOT00000072236 2 1 1 80 16 80549465 80549483 AAATGCCTCCATGAGACCC 60 80549403 80549421 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000077601 1 1 2 80 1 238375821 238376713 TCACGATGAACTTTAAGGAAGC 59 238375762 238375781 TCAGGAATCTGATGAGGTGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051395 ENSRNOT00000079119 1 1 1 60 16 25809420 25809441 TATAGAGATTAGCATGGTCCCT 58 25809462 25809480 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053894 ENSRNOT00000085287 3 1 1 61 X 130545544 130545564 CCCAAGGTGAGATTATTGCTG 59 130545587 130545605 GAGCCATCTCAAATGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058620 ENSRNOT00000089247 1 1 1 60 16 21397293 21397311 AATGAGGTCTATCCGAGGC 59 21397251 21397269 CTACAGCTGCCACATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058409 ENSRNOT00000080354 1 1 1 65 8 37411055 37411073 GTGCTTACCTCAGCATCAC 59 37411008 37411026 TCATCGTTGTGTAGGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053584 ENSRNOT00000078908 1 1 1 60 X 103014389 103014407 GTACATCAGTAGGTGGCAG 57 103014430 103014449 CATTCAAAGGGTCACCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053584 ENSRNOT00000078908 2 1 1 60 X 103014388 103014407 TGTACATCAGTAGGTGGCAG 59 103014429 103014448 ATTCAAAGGGTCACCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058256 ENSRNOT00000091984 1 1 1 60 2 82949120 82949138 CATGCATGTTCACTGGTGG 60 82949078 82949096 AGGTCAGAACACTGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073381.1 ENSRNOG00000027052 ENSRNOT00000030115 2 1 1 60 8 33345226 33345244 AAGACAGGAGTCATACGCA 58 33345184 33345208 CTTGAGTCTGATTAATGACAGTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050725 ENSRNOT00000074161 1 1 1 60 16 26999997 27000018 CTGGTTAGGACTTGAATGTGAG 59 26999958 26999979 GGCTTTCGGTTCATAAGTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052800 ENSRNOT00000086404 2 1 1 65 16 10740499 10740517 AAGGTTGTTCTCCCTGCTC 60 10740452 10740473 ACAGGTAGATAGCAGACAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000058810 ENSRNOT00000086906 3 1 1 61 16 71275056 71275079 CAGTAATTTACATAGCCAGACACC 60 71275097 71275117 CATAGCAGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057479 ENSRNOT00000080244 2 1 1 60 16 21047045 21047065 CGTGTTGTTAGTATGTGTCAG 57 21047084 21047105 AAGTCAGAACAGAATACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056077 ENSRNOT00000081135 3 1 1 60 X 31947541 31947559 TGTGTCACATGTGCATCAG 59 31947499 31947520 AACACTGAGTGTAGACATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059126 ENSRNOT00000082707 3 1 1 62 2 93809111 93809129 GTGCTTTCTTCAGCAACAC 58 93809154 93809173 GAGGCCATGTTACTGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002782.1 ENSRNOG00000054568 ENSRNOT00000088960 3 1 1 60 1 84833944 84833963 AGGAAGAAGGTGATGTGGTG 60 84833903 84833924 CCTAACAGCATATAGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059968.1 ENSRNOG00000054230 ENSRNOT00000078021 1 1 1 68 4 47117756 47117774 ACTGTGAGATCGCTTCTCG 60 47117706 47117725 TGATGACATGTGACTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000056950 ENSRNOT00000078012 2 1 1 67 X 26323838 26323856 TTTACACCCTGACCTGGAG 59 26323789 26323807 ATGAGATGGGCATGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067349.1 ENSRNOG00000059580 ENSRNOT00000084762 3 1 1 60 9 40965321 40965340 TGCACTTCTCACTTTCTACC 58 40965362 40965381 CGATAAAGACAAATGCGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000053107 ENSRNOT00000091035 2 1 1 64 6 88973486 88973504 TTTGCTGTGGACATGACCA 60 88973529 88973550 TGCTATCCAAGTAGCATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057793 ENSRNOT00000082820 1 1 1 60 4 116782896 116782918 GAGTAATCTGCTTGTGACATCTG 60 116782938 116782956 CATATCAGCCCAGTCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061208 ENSRNOT00000078679 3 1 1 60 9 25144385 25144406 CATCAGTAGGTGACAAAGTGAG 59 25144346 25144366 GAGGTTCACAGGTTAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA2 ENSRNOG00000054098 ENSRNOT00000090605 3 1 1 60 X 87163292 87163310 CTCTCCATGCTACTCCCAG 59 87163328 87163352 CACTCAGTATCTTCTTTCTAAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055947 ENSRNOT00000084094 3 1 1 113 2 205485189 205485207 TATACGAGTAGCTGCGCTC 59 205485094 205485112 AGTCTTCTTGACAGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000053927 ENSRNOT00000082298 3 1 1 60 2 165695625 165695645 GATATTGGAGTGCATCTGAGG 58 165695585 165695605 GCGATGTTGTTATCAACAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060380 ENSRNOT00000081429 2 1 1 60 9 104363990 104364009 TGAGATCCAGATCTTGAGGC 59 104364031 104364050 ATCTTCACGCCAAGATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044264 ENSRNOT00000069531 2 1 1 60 6 47310037 47310055 CTGCAGCTCAGTTGATCTG 59 47309995 47310015 TTCTCATCCCAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098157.1 ENSRNOG00000048063 ENSRNOT00000071496 3 1 1 98 X 5528835 5528853 AAATGCCTCCATGAGACCC 60 5528915 5528933 AAGACTACCAGCTCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.1 ENSRNOG00000039470 ENSRNOT00000060486 1 1 1 96 18 30568345 30568363 TCTACCCACTGCAGAATGC 60 30568466 30568484 CTTGAGCAGCTGGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053050 ENSRNOT00000082772 1 1 1 60 2 254424632 254424652 TAGAACTGGAACAATGCAGAG 58 254424592 254424613 GAATATGCAAGCTACCTTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053050 ENSRNOT00000082772 3 1 1 60 2 254424634 254424655 TACTAGAACTGGAACAATGCAG 58 254424595 254424615 TATGCAAGCTACCTTTGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057151 ENSRNOT00000081867 1 1 1 63 2 207172375 207172396 GCACCACATAAACTGAAATGAG 58 207172420 207172438 TTCGTGTCTTCCTTGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052298.1 ENSRNOG00000056275 ENSRNOT00000084003 2 1 1 80 3 45699293 45699311 TACCTATGAGCCAAGCCAG 59 45699181 45699250 TGATAGGAGACTCGATCGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000053416 ENSRNOT00000083494 2 1 1 60 2 53555832 53555850 TACAAGTAGCTGTGCTCCC 59 53555790 53555810 TCCTACAATGGACCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000052615 ENSRNOT00000081976 2 1 1 60 3 11869616 11869636 TCTGTCCTAGGATGACAAAGG 59 11869658 11869676 GTCAATGCCATCACAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061790 ENSRNOT00000090684 1 1 1 60 17 30252465 30252485 AGCGAAAGGCTATGTTTACAC 59 30252502 30252525 GGCTACTAATCATTCAGATGTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060983 ENSRNOT00000087087 2 1 1 60 2 164442500 164442518 CATGGGATCTCCAACTGCA 60 164442542 164442560 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060983 ENSRNOT00000087087 3 1 1 61 2 164442533 164442551 AGAGACTTTGACAGCCCAG 59 164442574 164442594 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057775 ENSRNOT00000083357 1 1 1 60 3 114321132 114321153 CCTATGATTTCTCCACTACCAC 58 114321093 114321111 GGGAAAGCATGGATACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057775 ENSRNOT00000083357 3 1 1 60 3 114321132 114321154 TCCTATGATTTCTCCACTACCAC 60 114321094 114321113 GGAAAGCATGGATACAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035238 ENSRNOT00000053361 2 1 1 60 X 106830689 106830707 TCCCGATCTTGTTTGAACC 58 106830730 106830749 CCCATCCAAGTACTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056262 ENSRNOT00000087333 3 1 1 60 10 96048301 96048323 GTATGTATGAGTACTTGTGCTCC 59 96048343 96048361 TAGGAAGCACTCCAAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.3 ENSRNOG00000056073 ENSRNOT00000089103 2 1 1 105 2 188667442 188667464 AGAGATCATCTAAAGCCATCGG 60 188667532 188667551 CTTGTGACGTAAGGATCCCA 60 Novel Rattus norvegicus 81 AC098750.3 ENSRNOG00000056073 ENSRNOT00000089103 3 1 1 105 2 188667442 188667463 AGAGATCATCTAAAGCCATCG 58 188667533 188667551 CTTGTGACGTAAGGATCCC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000048684 ENSRNOT00000073890 1 1 1 60 16 13660730 13660748 CCATACCACCATGAACGTG 59 13660688 13660706 GACAGCAAGACCCTATTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061907 ENSRNOT00000084693 3 1 1 60 16 28643322 28643340 TCCCAATAAGGACCTGGTG 59 28643363 28643382 CTTCATACCCTACCCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017745.3 ENSRNOG00000054569 ENSRNOT00000087199 2 1 1 104 15 30550240 30550364 CCTACTCGGAAGGACTCAC 59 30550432 30550450 CGTGTGGCTGAATAAGTGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055940 ENSRNOT00000086182 1 1 1 60 16 24545284 24545302 CACATGTGTCACTAGGTGG 58 24545326 24545344 AGGTCAGAACACTGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059930 ENSRNOT00000089566 1 1 1 60 1 9201953 9201974 GAGGCTACATCTACACTCAGTC 60 9201991 9202013 CAGGTTGGCTACTAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060763 ENSRNOT00000086697 3 1 1 60 X 29292544 29292562 TCCATAGGTGGCAGAAAGG 59 29292585 29292604 ATGTTCACAGGTGAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000059139 ENSRNOT00000088828 3 1 1 60 16 68391104 68391122 AGGACAGGTACAGCATAGG 58 68391062 68391081 TACATGGACAAGATGGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063272.2 ENSRNOG00000058265 ENSRNOT00000084079 1 1 1 80 6 25622277 25622296 AAATGGTTCAGAGGAAGAGG 57 25622336 25622358 ACTAAATTCCCTTTCTCTAGCC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052816 ENSRNOT00000089669 3 1 1 60 10 20013189 20013207 CGAGGTTATGTCTGTGCTG 58 20013227 20013249 GTGTTAGGTCACTAACCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000058691 ENSRNOT00000091579 3 1 1 61 X 107799818 107799837 GGCACAGTTACTCTACAGCT 60 107799858 107799879 GTATCAAATGCTTTAAGCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA12 ENSRNOG00000052607 ENSRNOT00000085928 2 1 1 60 1 263890772 263890790 TCAAATGGGCCTGACTCTG 60 263890730 263890749 TTTGTCTCTAAGCCTTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061493 ENSRNOT00000079405 2 1 1 60 X 129074388 129074407 CACTGGGTGACAAAGAAGAG 59 129074347 129074367 GAAGTTCTTAGAGCAGAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010944.1 ENSRNOG00000056299 ENSRNOT00000080951 2 1 1 60 2 155555892 155555912 GCAAGTTTAGAAAGCAGTCTG 58 155555933 155555952 GCTTTCTTGGGAGATCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000052616 ENSRNOT00000091426 1 1 1 61 8 58229764 58229782 CTTCCCATGGGATCTCCAC 60 58229806 58229825 AGCTTCAGTGTACTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036194 ENSRNOT00000054317 2 1 1 60 8 27933606 27933624 TCTTGGAAGCTAAGCAGGG 59 27933564 27933582 AGCACTTGGTATTCCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000056450 ENSRNOT00000091995 3 1 1 60 3 46824620 46824640 AGAATCACATCCTGATAACGG 58 46824580 46824598 CAGCAGATCCTTTGAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111831.2 ENSRNOG00000060905 ENSRNOT00000092218 3 1 1 91 6 8346766 8346784 CATGATTGACAGTGCCAGC 60 8346837 8353508 GTTTCTGCTTCAGAACCTGTC 60 Novel Rattus norvegicus 81 AABR07049038.1 ENSRNOG00000060051 ENSRNOT00000085032 1 1 1 148 5 101301162 101301180 TTTCTCTGGTCTGGACAGC 59 101301030 101301048 ATATCCTTCTGCACGGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049038.1 ENSRNOG00000060051 ENSRNOT00000085032 3 1 1 152 5 101301162 101301180 TTTCTCTGGTCTGGACAGC 59 101301026 101301044 CCACATATCCTTCTGCACG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058961 ENSRNOT00000088419 3 1 1 60 17 60656468 60656487 TCACATGAACTGTGCATCAG 59 60656427 60656448 GAACACCGAACATAAACAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059161 ENSRNOT00000090686 3 1 1 61 6 114583643 114583661 GTGTCAGTAGGTGGCAGAG 60 114583683 114583704 ATGTTCTTAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058140 ENSRNOT00000083694 3 1 1 71 16 3113683 3113701 GCTCAGTTCCAACTCACAC 59 3113736 3113754 GCATGTTATCCTTGCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057950 ENSRNOT00000078409 3 1 1 60 1 152004305 152004324 CTGTGTTGCATATGCATCAG 58 152004345 152004365 ACACTGAGTGTAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD49 ENSRNOG00000057240 ENSRNOT00000081324 1 1 1 60 10 48927731 48927752 AAACTAGAAATAGGAAGTGCCG 59 48927770 48927791 AGTCAGCTAAATAGAGATGTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057752 ENSRNOT00000087231 1 1 1 60 2 185578729 185578747 ATATGGAGGCAGTACAGGT 58 185578687 185578706 AGTAGCCTCCTTCTACTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060567 ENSRNOT00000079613 2 1 1 64 10 94006626 94006645 AGAGAAGATTAGCATGGCCC 60 94006581 94006600 TCTCTGATTGAACGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000085958 2 1 2 100 8 85605841 85605859 CATGTACCCTGGTACAGGG 59 85619564 85619583 GCAATGCAGCTAACTAAGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039498.1 ENSRNOG00000060786 ENSRNOT00000087119 2 1 1 60 X 78565440 78565460 TCAACATCACACTACGTATCC 58 78565480 78565500 GTGTAGATACAAGGAAGCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002680.1 ENSRNOG00000047795 ENSRNOT00000074222 2 1 1 60 1 80778934 80778954 CTTGAACTCAGAGATCCACCT 59 80778894 80778912 TAGCACAGGCCTTTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059034 ENSRNOT00000077403 2 1 1 60 15 12840042 12840061 GAGGCTATGTCAACACTCAG 58 12840081 12840102 AGTTAGGCTACGGATCATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069736.1 ENSRNOG00000056194 ENSRNOT00000088001 1 1 1 80 8 38548331 38549172 CCCTTCAAGCTTTGCAGTG 60 38548269 38548291 TCTGGCATATAAGTCTTCCAGTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051914 ENSRNOT00000091445 1 1 1 60 4 136165603 136165623 GTGGTTGCTGTGTTACATGAG 60 136165643 136165663 GAGAACACTGAGCCTATCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051565 ENSRNOT00000081252 2 1 1 60 4 75730746 75730766 TTTAGATGTGGTAAGGTGAGC 58 75730787 75730806 TTCAGAAGGGATGCATATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060285 ENSRNOT00000080458 1 1 1 60 17 31942741 31942762 GACTTATAGAGTCATTGCAGGT 58 31942702 31942720 TTCTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055697 ENSRNOT00000086006 1 1 1 60 4 34460422 34460442 GGCTAACCTTTCCCAATAGAG 58 34460464 34460482 GTGCTGCTACTTGCTTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059706 ENSRNOT00000083483 1 1 1 60 4 165493401 165493419 GCATCAGTATGTGGCAGAG 58 165493359 165493377 GTCGTGGGTGAGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054234 ENSRNOT00000085855 3 1 1 70 4 101750153 101750172 TACCACCTACAGGTATAGCA 57 101750102 101750120 TCTTCTGTGCCACCTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059249 ENSRNOT00000080571 3 1 1 60 9 15608914 15608933 GAGAAGATTAGCATGGCCTC 58 15608956 15608974 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051761 ENSRNOT00000089503 1 1 1 60 9 77004767 77004785 CTTCTTCCCTCACCAGTCC 59 77004725 77004745 TAGGTCATGCTCAACTGACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000059737 ENSRNOT00000081467 3 1 1 90 9 75357785 75357804 CAGAGAAGGCTAGAGTTCCT 58 75357714 75357734 CATGAAGACAAAGGCAATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056456 ENSRNOT00000085749 2 1 1 66 12 692834 692855 CTGAAGTTGGAAGGATACAGAG 58 692882 692900 TTCAGGAATTTGGGTGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032045.1 ENSRNOG00000061132 ENSRNOT00000083407 1 1 1 80 18 44058040 44141684 CCAACCCTGAAGATACAGG 57 44057978 44057997 TTTCTCTGCAGAATTCTCGA 57 Novel Rattus norvegicus 81 U2 ENSRNOG00000059976 ENSRNOT00000080033 1 1 1 60 10 89511800 89511819 GAGTTGGAATAGGAGCTTGC 59 89511842 89511860 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059976 ENSRNOT00000080033 3 1 1 60 10 89511801 89511819 AGTTGGAATAGGAGCTTGC 58 89511842 89511861 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052473 ENSRNOT00000080994 2 1 1 60 6 73437209 73437231 GGAACGATACAGAGAAGATTAGC 59 73437251 73437269 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000053313 ENSRNOT00000083519 3 1 1 60 10 12933618 12933637 GTCGTACTGTAGCTGTTGGT 60 12933577 12933596 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 2 1 1 75 15 44329525 44329560 GAAACAAGCCGAGACACAG 59 44329598 44329617 TCTTGGATCATGTCCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030777.1 ENSRNOG00000059694 ENSRNOT00000091877 1 1 1 60 10 104000525 104000544 GTCTGTCGGTGTTGTTATGC 60 104000484 104000502 ATTCGTGGTGTCTGGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000060251 ENSRNOT00000090297 1 1 1 60 17 73704755 73704775 CTGTGATATAGCATAGCTCGG 58 73704797 73704815 TAGGAGCGAAAGACACGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053558 ENSRNOT00000079317 2 1 1 60 17 68027425 68027447 CTACTGTGTCATATGCACATGAG 59 68027466 68027485 GTCTGGACACAGACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000055242 ENSRNOT00000078549 3 1 1 60 17 86914854 86914873 GAGGACAAGTCTAGCAGAGG 59 86914896 86914914 CCAATCACCAGCTACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060754 ENSRNOT00000084515 2 1 1 60 X 74936892 74936912 AGGCTATGTCTGTCTATGCTC 59 74936852 74936875 TAGGCTACTAACCATTCAGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041942 ENSRNOT00000063695 3 1 1 60 X 136888050 136888069 TGAATGTGCCTGATACTGTC 58 136888092 136888110 ACATACTTGCAATGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056775 ENSRNOT00000077669 3 1 1 64 3 99131094 99131112 GGCTGATGTGTCACATGTG 59 99131048 99131067 CACTCAGCATAGACGTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056104 ENSRNOT00000084763 2 1 1 62 12 47549560 47549581 AGAAGGGTAAAGGAATTCTCCA 59 47549519 47549537 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 2 1 1 60 18 40124214 40124234 GAGGAAGGGATTCCTTCCT 58 40124257 40124276 CTTTGCCGCAGTATCTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063346.1 ENSRNOG00000051471 ENSRNOT00000078660 3 1 1 81 6 29518418 29518436 GATGGAGTCAGAAGCTGAG 57 29518481 29522269 TCTATACACTGCTTTCGCC 57 Novel Rattus norvegicus 81 AABR07055288.1 ENSRNOG00000047893 ENSRNOT00000073083 3 1 1 93 7 1149784 1149803 TGGTAGAGGAACAAGGAGAG 58 1149859 1149879 GCGAGTCCAAATTCTTTGG 57 Novel Rattus norvegicus 81 U3 ENSRNOG00000053796 ENSRNOT00000082263 3 1 1 60 10 57319457 57319478 AGTTCGTTACTAGAGAAGTTGC 58 57319418 57319438 GTCTCATCCTCATGGTTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122603.2 ENSRNOG00000059288 ENSRNOT00000078628 2 1 1 131 16 20052156 20052174 TTTGCTTTGGCTTTGAAGG 57 20052042 20052060 TGTCTCAGGTGTCTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054492 ENSRNOT00000085592 1 1 1 60 1 94762556 94762576 ACCGATACAGAGAAGATTAGC 57 94762598 94762616 CGCTTCATGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060191 ENSRNOT00000081341 1 1 1 60 12 43981757 43981776 GTATACACTGGCTGGCTAGG 60 43981799 43981817 ACACAAGGAGCAGTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028977.1 ENSRNOG00000061035 ENSRNOT00000078773 3 1 1 60 10 1406701 1406719 GACCAAACCCTTCATCCAC 59 1406740 1406761 ACCAGATTTGAACAGAAGAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132980.1 ENSRNOG00000059512 ENSRNOT00000074001 2 1 1 67 2 194014350 194014370 TCAATGGTAGAGTCACATCCC 59 194014301 194014324 AAACACTGTATAGAATCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067878.1 ENSRNOG00000054699 ENSRNOT00000088268 3 1 1 92 9 70311875 70313273 ACAAAGAGTTGCAGGACCA 60 70313329 70313347 CATTCCCACAATGAGCAGG 59 Novel InUTR Rattus norvegicus 81 U1 ENSRNOG00000055479 ENSRNOT00000085539 2 1 1 99 1 199494521 199494541 GAGACACTATGATCAGGAAGG 57 199494442 199494461 TTGAGAATCCTGGATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066624.1 ENSRNOG00000045990 ENSRNOT00000072423 1 1 1 89 9 12001560 12001578 CGTCAGAGGCTAAGGAGAG 59 12001485 12001508 TAGGTCACTTGCAGACTCAC 60 Novel Rattus norvegicus 81 LOC100910526 ENSRNOG00000040215 ENSRNOT00000081413 1 1 1 80 9 4663094 4663116 AGGATATTAAGGACCCATCTTCC 59 4658892 4663057 AGCCACATAAAGGAACTTACAG 59 Novel Rattus norvegicus 81 Rn60_20_0041.1 ENSRNOG00000056193 ENSRNOT00000089398 2 1 1 93 20 1980947 1982945 GCAAGAAACAGAGCAATCTC 58 1982998 1983019 TCATTAGGATACCGATCATTGG 58 Novel Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 1 1 1 74 14 99672249 99672270 ATTAGCCATTCTGACTGGTG 58 99672306 99672325 ACATCCTTACTCATCAGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 1 1 1 64 2 198601758 198601780 ATCCACAGAAACAAACCTTCAG 59 198601805 198601823 CTGTGGTAAGGAATCCGGG 60 Novel DesignNoJunction Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000076321 2 1 3 167 6 104467609 104469437 TTTCCCTTCCACTGGAGTG 59 104475046 104475064 AATCCTAAAGCCAGCGAGG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060497 ENSRNOT00000079888 1 1 1 60 2 101171978 101171996 CAGTAGTGGAATCGCTCCT 59 101172020 101172038 CCCTATATTGCCCAAGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068018.1 ENSRNOG00000061280 ENSRNOT00000083389 1 1 1 80 9 77680044 77680066 AGATTTCACCTCACATGCG 58 77679982 77680001 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AC108588.1 ENSRNOG00000058408 ENSRNOT00000088163 3 1 1 80 10 12715388 12715411 TCATAGAGGACTTCCCTAACCT 60 12715448 12715470 GGTCCAATCTATTTGGAGTTCTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054470 ENSRNOT00000078716 3 1 1 60 1 192400859 192400878 TGTTCCCAGAGCATCATACC 60 192400899 192400919 GACAGGTATATGTGTTCCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118794.1 ENSRNOG00000059865 ENSRNOT00000079215 2 1 1 80 16 2461191 2461212 CCTTCACTGGAGAAATATGGAG 58 2461252 2469952 AAGGTCATACCAATGTCCAC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035171 ENSRNOT00000053294 1 1 1 60 10 43188377 43188395 CTTGGAAGTTAAGCAGGGT 57 43188419 43188437 ATATTCCCTGGCAGTTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035171 ENSRNOT00000053294 2 1 1 60 10 43188377 43188396 CTTGGAAGTTAAGCAGGGTC 59 43188419 43188437 ATATTCCCTGGCAGTTTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000056978 ENSRNOT00000087390 3 1 1 67 12 40881468 40881487 CATAGTGTCCCGTGCTAGAG 60 40881420 40881438 CAGGAGCCTACAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007023.1 ENSRNOG00000056577 ENSRNOT00000086008 1 1 1 248 1 277459513 277459531 AATTCCTCCAGTCCCACAC 59 277459743 277459761 GTGAGTGAGTGTGAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044645 ENSRNOT00000069912 2 1 1 60 2 253549414 253549433 CTGAATGTGCCAGATCTTGC 60 253549373 253549393 ATTACAAACCATGCCTGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060677 ENSRNOT00000087829 2 1 1 60 2 177973923 177973944 ATACAGAGAAGATTAGCATGGC 58 177973962 177973983 GGAACACTTCATGAATTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054090 ENSRNOT00000091434 1 1 1 60 17 24500598 24500619 AGAAGGGTACAGAGAAGATCAG 59 24500640 24500658 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035819.1 ENSRNOG00000046565 ENSRNOT00000073701 1 1 1 68 12 23598977 23598995 CACTCTGTAGACCAGGCTG 60 23599027 23599045 TAATCCCAGCACTTGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135645.1 ENSRNOG00000054126 ENSRNOT00000090147 2 1 1 60 3 80885761 80885779 GTAGAAGAGCGATTCAGCC 58 80885719 80885741 ATTCTCCTTACCTGTATGACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027267.1 ENSRNOG00000060618 ENSRNOT00000088725 2 1 1 80 17 21984340 21984360 ACAGGAAAGAGCATATGTCAG 58 21984400 21984424 TCTACTCCTCCTGTATTTGCT 58 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000056852 ENSRNOT00000084105 3 1 1 61 1 116740900 116740921 GACAACAGAAAGTCAAGAACAG 58 116740860 116740879 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053823 ENSRNOT00000078198 1 1 1 60 2 244937718 244937736 GAGAAGATTAGCATGGCCC 58 244937760 244937778 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048653.1 ENSRNOG00000047928 ENSRNOT00000073640 1 1 1 60 5 86870133 86870151 GTGCAGACTCGTTGTACAG 59 86870091 86870110 GTCGGAGAATTCAGCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094902.1 ENSRNOG00000053771 ENSRNOT00000082550 3 1 1 60 1 267652262 267652280 GGTCATGAAGTGGTTCCAG 58 267652220 267652238 GTATTTGTGGGAGATGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059879.1 ENSRNOG00000031045 ENSRNOT00000046350 1 1 1 60 4 40004990 40005009 TTTATCTGCACTGCCAAGAC 59 40005032 40005050 TCACCTTCCCAAAGACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.2 ENSRNOG00000052772 ENSRNOT00000090675 1 1 1 60 1 167956870 167956889 CTCCTACTGTTTCCACCCTG 60 167956911 167956930 ACTGTTGATCCTGGTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.2 ENSRNOG00000052772 ENSRNOT00000090675 2 1 1 60 1 167956648 167956669 CTTCATTCAACTCTTCACTGTC 57 167956690 167956708 GCGATCATAAGCCATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0822.1 ENSRNOG00000051261 ENSRNOT00000077064 2 1 1 75 13 77264731 77264750 ATTCTCTGCCTAGGAAGCTG 59 77485157 77485175 TCTGAGCAATGAATGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053266 ENSRNOT00000083648 1 1 1 61 3 171596235 171596253 GGACTCCAAATCAGAACGA 57 171596278 171596296 TTTATGTCATCCTTGCGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126899.1 ENSRNOG00000011065 ENSRNOT00000014753 3 1 1 81 19 44396481 44396501 TCAAACTAACCGACATCAGTG 58 44396267 44396289 CTCAGTTGGACATCAAGTGG 59 Novel Rattus norvegicus 81 AABR07056470.1 ENSRNOG00000058647 ENSRNOT00000078534 3 1 1 90 7 26440503 26457239 ATGTGAAGACATACAATGCCC 59 26457289 26457309 GGGTTCATTGTCAGTATTCCA 58 Novel Rattus norvegicus 81 SCARNA16 ENSRNOG00000057444 ENSRNOT00000089532 1 1 1 60 14 86679615 86679633 AGCCCTGTACCTTTAGCTC 59 86679573 86679591 CAGGGAGGATGCTTCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053421 ENSRNOT00000086197 1 1 1 75 12 9597070 9597088 TTAGAGGTACCAGTGCAGC 59 9597127 9597145 AGTGTAGACACAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046917 ENSRNOT00000074511 2 1 1 60 12 28997854 28997873 CCATACCATACTGGACATGC 58 28997895 28997914 CCATCCAAGTACTAACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059523 ENSRNOT00000083202 3 1 1 60 3 61529590 61529609 GGAACGACACAGAGATTAGC 59 61529631 61529650 AATGCTTCCTGACTTAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.1 ENSRNOG00000052420 ENSRNOT00000087848 3 1 1 250 12 2589830 2589849 GAATCCGAATGGTTCAGCTG 59 2590062 2590081 TTGATCCACCCTCTTACCC 58 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000052457 ENSRNOT00000088539 2 1 1 66 17 87158250 87158268 CACCTCAGCAGCATATACC 58 87158298 87158316 TTGCGTGTCATTCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065150.1 ENSRNOG00000043690 ENSRNOT00000068957 2 1 1 60 6 111692485 111692504 GATGGGCTTTGAGGTTTCAG 59 111692444 111692463 AGAAGGAAGAGACTGTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052296.1 ENSRNOG00000055541 ENSRNOT00000090213 1 1 1 66 3 45498242 45498260 GTACTGGGTTTGGAATGCC 59 45498094 45498113 AATAAATCGTCATGGTGGGA 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052046 ENSRNOT00000085375 1 1 1 60 14 9916346 9916364 GAGAAGATTAGCATGGCCC 58 9916304 9916322 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061261.1 ENSRNOG00000053836 ENSRNOT00000084897 3 1 1 60 4 113101294 113101315 AGTGACCAATTATTTCCTGGTG 59 113101336 113101354 ATTGAATGCAGCCATGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061087.1 ENSRNOG00000052612 ENSRNOT00000084103 2 1 1 60 4 103761781 103761802 AGAGTCTGCTACATAGTAATGG 57 103761742 103761760 TTTCCTGGCTTCTGAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049159 ENSRNOT00000070837 1 1 1 60 1 262651438 262651456 GATCTCAGAAGCCAAGCAG 58 262651396 262651416 TTCCCAAGTCATCTCCTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000076715,ENSRNOT00000089351 1 2 2 60 13 78998259 78998278 TTGTTGCACTGACTTGTAGG 59 78998300 78998319 AAACTCACAGCATAAGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000058910 ENSRNOT00000085726 1 1 1 60 1 117143637 117143658 TTGGAAAGCTGAACAAGATGAG 59 117143598 117143618 GACCTCAGTCACGATGATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061065 ENSRNOT00000086781 3 1 1 60 14 7685919 7685941 GTAGCTGACTAGACCAATACTCC 60 7685881 7685903 GTTCTAGAGGGACAGAGATAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015596.1 ENSRNOG00000048944 ENSRNOT00000071542 3 1 1 60 14 65152646 65152669 CAGACTCATTATGGTCGTTATCAC 60 65152609 65152629 ATGAGCAATGAGAGCAATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008724.1 ENSRNOG00000019037 ENSRNOT00000025809 1 1 1 80 2 71753817 71754346 CCAAAGTTACATCAGCTCAGG 59 71754385 71754406 ATTCCACCTTCAGATTATGCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054137 ENSRNOT00000090514 3 1 1 60 2 145570976 145570998 GGATGGGTACTAAGTCATTTGTG 59 145571018 145571036 GCTTAGCTATTGCCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047011.1 ENSRNOG00000008861 ENSRNOT00000011720 3 1 1 85 5 15087573 15087593 AAGTTACTTCACCCTACTGGG 59 15087640 15087660 TCTCAGGAGCTTCTGTCTG 58 Novel Rattus norvegicus 81 AABR07043875.1 ENSRNOG00000058801 ENSRNOT00000090416 3 1 1 80 19 45386115 45386139 GAGTGATGCCTGTATTTGGA 58 45386181 45386200 AAAGACATCCCTTCCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053734.1 ENSRNOG00000033913 ENSRNOT00000050172 3 1 1 60 3 122818127 122818151 GTTAAGGACTATGGCAAAGAATCTC 60 122818168 122818187 TGCATTTGAAGTACTCCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009786.1 ENSRNOG00000036430 ENSRNOT00000054542 1 1 1 60 2 112289687 112289708 TTGCCTAAGAAATCCTTCTCTG 58 112289729 112289747 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024932.1 ENSRNOG00000059091 ENSRNOT00000078734 1 1 1 96 16 22111030 22111048 TTCACCATGCCATTTCCAG 58 21955232 22110970 GGTGTCAAGCCATACTCTG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000046771 ENSRNOT00000054229 1 1 1 60 3 41769676 41769695 CCGATCTCTTCTGATCTCGG 60 41769716 41769736 CTCTCATCCAAGGACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059887 ENSRNOT00000087478 1 1 1 60 1 265925692 265925710 GAGAAGATTAGCATGGCCC 58 265925650 265925668 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC239813.1 ENSRNOG00000053042 ENSRNOT00000077708 3 1 1 80 Y 214669 215152 GATGATGTAGGAGAAACTGTAGAC 59 215187 215209 GCTACTCTGATCAATGACTTCAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000057841 ENSRNOT00000085645 2 1 1 60 2 112669035 112669054 GGCTAAACTTTGTCCTTTCC 57 112669074 112669095 CCCATTATCACAAATTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061926 ENSRNOT00000091332 3 1 1 61 2 53669289 53669307 GCATGCTTCATGTGTCCTG 60 53669332 53669350 AAGACCAGGGAAGCTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055501 ENSRNOT00000084539 3 1 1 60 1 221277167 221277191 GCATATACACTAGACAATACAGAGG 59 221277131 221277149 GTGAGTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006327.1 ENSRNOG00000041469 ENSRNOT00000063222 2 1 1 67 1 229066001 229066021 CATTGGAAGAAGGAAGATCCC 59 229065954 229065973 ATCTAGCAGTTGCTCAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049134.5 ENSRNOG00000056992 ENSRNOT00000046837 1 1 1 60 5 107369960 107369978 TATCCCTGTCCTGCATGAG 59 107370000 107370020 TGACTCCTTTGATGTGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049134.5 ENSRNOG00000056992 ENSRNOT00000046837 2 1 1 60 5 107369811 107369832 CCTCATACTCATAACCTCAGGA 59 107369853 107369871 GTCTCCTCATTTGTGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001064.1 ENSRNOG00000017678 ENSRNOT00000023779 1 1 1 80 1 36957073 36957095 TGTACCTCCTGATGAACTATGC 60 36957014 36957035 CTTCACAATCCTTCACAAAGCT 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000057383 ENSRNOT00000084124 3 1 1 60 14 108524855 108524874 TTAGCCACTGTACTCCAGAG 59 108524814 108524834 AGTTGATTCTCCCATATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC242953.1 ENSRNOG00000056639 ENSRNOT00000080441 3 1 1 80 Y 845602 845623 AAGACTTCACTACCTACTCCAG 59 845662 851995 GTTGCTGTCATCATCCTTCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058717 ENSRNOT00000090801 2 1 1 60 14 81845099 81845119 ACTAAGACCAGAAGGACACAG 59 81845059 81845077 ACGAATCTGCATGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072872.1 ENSRNOG00000028492 ENSRNOT00000029710 3 1 1 60 3 59516432 59516456 CAATTACTACTGTACTCATGATGGC 60 59516472 59516492 GGACATGATGATAGAGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067763.1 ENSRNOG00000060678 ENSRNOT00000079058 3 1 1 113 9 61812590 61812610 TACCAGTCACAGTACTGGAG 58 61812685 61812705 CCCATATGTTCCTGTTGAGTC 59 Novel Rattus norvegicus 81 AABR07036487.1 ENSRNOG00000047830 ENSRNOT00000070891 2 1 1 60 12 44686301 44686320 CTGTTAAGAGACTGCTCGGA 59 44686260 44686279 TAAGTGCTGAGATTACAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055792.1 ENSRNOG00000046029 ENSRNOT00000040134 2 1 1 86 7 10091422 10091443 CTATGAATGTGATCAGTGTGGT 58 10091487 10091510 CATAGGGTTTCTCCAGTATGAG 58 Novel Rattus norvegicus 81 LOC103694557 ENSRNOG00000052020 ENSRNOT00000085338 2 1 1 80 Y 794367 794387 CAAGACTTCACTACCTACTCC 57 794428 800753 TTGCTGTCATCATCCTTCTC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000058573 ENSRNOT00000079603 1 1 1 60 12 2707016 2707037 AGGGTTGATCTAGCTGATATGG 59 2707055 2707076 CGGAATTGTAAGGGATAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057261 ENSRNOT00000080414 3 1 1 60 1 70101731 70101752 TCATCAATATGGTGATCTCCCG 60 70101773 70101791 GTTCACCTCTCCTTAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127,ENSRNOT00000077423,ENSRNOT00000089439 3 3 4 86 1 49681981 49844387 CAGTACAGAACTGTGACCTG 58 49681914 49681932 CAGAGGCATTTGTTTCGTG 58 Novel Rattus norvegicus 81 AABR07003264.1 ENSRNOG00000058252 ENSRNOT00000080576 1 1 1 70 1 103053079 103053097 CATGGGCACATTTCCAGAG 59 103053631 103053649 TGTTCTCCCGAACAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA13 ENSRNOG00000059389 ENSRNOT00000078535 2 1 1 60 6 128749260 128749278 GCCACGGTGATAATGACTG 59 128749218 128749238 CAAAGCTTCTCTGACTGTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052624 ENSRNOT00000080080 3 1 1 60 14 24117458 24117480 GATACAGAGAAGATTAGCATGGC 59 24117500 24117518 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056749 ENSRNOT00000086163 3 1 1 60 14 82124654 82124674 GAGCAAGATAATCTGGACTGG 58 82124614 82124636 CATGGTATTCTGTTGTCCATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056534 ENSRNOT00000083400 2 1 1 60 5 120390280 120390298 GGACAACCTTCCCTGAGAG 59 120390321 120390340 GCTGCTTGTACATCCTTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000058441 ENSRNOT00000086402 3 1 1 73 1 228177911 228177929 CAAGAATGGAAGAGGCCCT 59 228177966 228177984 TTTCAAATGGTGCCACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015078.1 ENSRNOG00000055956 ENSRNOT00000085875 1 1 1 60 14 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 46650337 46650355 TGTTCACCTTGGAGACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058835 ENSRNOT00000081774 3 1 1 60 3 163446977 163446998 TCAGCTAGTCAATCAGTCAGTC 60 163447018 163447037 AAGAAAGGAAGGGACATCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0055.15 ENSRNOG00000056189 ENSRNOT00000092081 1 1 1 60 20 3307075 3307093 GTGAGGGAAGTAAGAGGGT 58 3306838 3306856 GAGACATCTTCAGACTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060215 ENSRNOT00000090363 3 1 1 60 1 207364592 207364613 ACATGTGAGTCAGTAGTAGCAG 60 207364553 207364573 AGGTCAGAGCACTGATTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060968 ENSRNOT00000077699 1 1 1 60 2 244824704 244824722 GAGAAGATTAGCATGGCCC 58 244824746 244824764 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059609 ENSRNOT00000089753 1 1 1 60 2 96521607 96521625 CTGTCAGTAGGTGGCAGAG 60 96521648 96521667 ATTCATGGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017238.1 ENSRNOG00000059383 ENSRNOT00000091142 3 1 1 60 15 19109044 19109064 ACAATGATCTCTATGGTTGGG 58 19109004 19109026 CCTTCATAAAGTGTATCTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114845.1 ENSRNOG00000058760 ENSRNOT00000082637 2 1 1 72 14 22785248 22785266 TCCAAGCTCAAAGGACCAG 60 22785190 22785213 CCATCTCTTTCTTTAGGTTAGGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035194.1 ENSRNOG00000055786 ENSRNOT00000087840 1 1 1 80 12 6625776 6625796 ATCGGGCAAATAGAACAACTC 59 6624796 6625736 GTATGTGCAGAAAGTATCCCA 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000058966 ENSRNOT00000089090 1 1 1 60 2 211233188 211233208 GGATATCTTTCATCCTGGGTC 58 211233230 211233248 ACTCCAAAGGAGGATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 1 1 1 60 15 109346029 109346048 AAGCAACACTAACTTCTGGA 57 109346070 109346090 TTTCTAAGCAAACACAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061673 ENSRNOT00000085838 1 1 1 82 5 168053589 168053607 AAGGTGGTTTCCCAGAGTG 60 168053653 168053671 GTTAAGTTTCCCACGCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD73 ENSRNOG00000052487 ENSRNOT00000079032 2 1 1 60 2 185443034 185443052 TGACAGGATGTTTCGGTCC 60 185442992 185443013 TCAGCAAGAAATGTTATCGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007690.2 ENSRNOG00000041749 ENSRNOT00000063502 3 1 1 76 2 24178742 24178760 GCTGTTAAATGGCGATCCT 58 24178800 24178818 AGTGGCTGAAGAGACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058230 ENSRNOT00000085268 1 1 1 60 2 205576857 205576875 CCAGGGTTCATTCTCAGAC 58 205576899 205576917 GACATATGGAGCTGGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061077.1 ENSRNOG00000058738 ENSRNOT00000086523 1 1 1 60 4 103636568 103636586 GAGAGTCAGCTTCCATCAC 58 103636526 103636546 GTCTTGCCGTCTTTGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044394 ENSRNOT00000069661 3 1 1 60 7 78039827 78039847 CAGACCATTAGAATGCACCTG 59 78039787 78039808 TCTTGATTGACTCTGCTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056143 ENSRNOT00000087396 1 1 1 60 3 105751222 105751242 TATTTGCATCCCTACAGAAGC 58 105751264 105751282 TAGCCCAGAAAGATTGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051251.1 ENSRNOG00000056471 ENSRNOT00000078985 2 1 1 84 3 4106560 4107868 TACTGAGCAGCTCTTAGGC 59 4107916 4107934 CAGTGGGTCCTTCCATCTC 60 Novel Rattus norvegicus 81 AABR07042623.1 ENSRNOG00000061644 ENSRNOT00000086313 2 1 1 81 19 359507 360696 ATCCAAGAACAACAGGCCA 60 360740 360759 AATTGACATGACCACCTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052196 ENSRNOT00000090582 3 1 1 60 2 3634752 3634770 TGCACCTAGAGGAATTGCA 59 3634710 3634728 CTCTGCTACCTACTGATGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.6 ENSRNOG00000058618 ENSRNOT00000081189 2 1 1 80 2 188691573 188691939 TTCTCTACATCCAAGCCCTC 59 188691982 188692000 AGCGCCTGGTGATATAGAC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058363 ENSRNOT00000079604 2 1 1 60 1 16995817 16995837 CCTTGATGCCTTGACATACTG 59 16995857 16995877 TGATAAGGGACACATATGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141028.3 ENSRNOG00000055364 ENSRNOT00000081389 1 1 1 80 X 5691106 5691128 AGATTTCACCTCACATGCG 58 5691171 5691190 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AC098750.1 ENSRNOG00000053928 ENSRNOT00000085305 3 1 1 88 2 188762105 188762123 TTGTTCGCACCTGTTACCT 60 188762174 188762195 AGAGAAGAACAAGGATGGGC 60 Novel Rattus norvegicus 81 Rn60_X_0771.2 ENSRNOG00000055485 ENSRNOT00000080128 1 1 1 80 X 77065756 77073617 ATGCTAATGCTTCTAAGGTCTC 58 77065697 77065717 CAGTGGCTTTATCATCCTGTC 59 Novel Rattus norvegicus 81 Rn60_X_0772.2 ENSRNOG00000057517 ENSRNOT00000086595 3 1 1 60 X 77191630 77191649 AAGTGAAATGGAGAATGGGT 57 77191671 77191690 GTGTGAAAGGACTAGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057303 ENSRNOT00000086462 2 1 1 60 1 100213589 100213609 GGTTGGTTCGACTAATCTGAC 59 100213631 100213649 CATAGAGTGGTGAGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013591.1 ENSRNOG00000060967 ENSRNOT00000083768 3 1 1 68 2 245325950 245325968 AGGAGGATCATCGCTTCTC 59 245325900 245325920 GAATGGATACCTGATCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060014 ENSRNOT00000091246 1 1 1 60 9 60527136 60527157 TTTAGAAGCAGGGAGATAAGAC 57 60527176 60527196 ATAAGAGGGTGATTTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000075913 3 1 2 150 13 84954997 84955015 AGCTGGAAATGCTAGGGTG 60 84937286 84954883 TCCCTTGTTGTCCTTCCTG 59 Novel Rattus norvegicus 81 Olr1340 ENSRNOG00000053238 ENSRNOT00000079362 3 1 1 60 8 43970372 43970391 AGCATAGGGAATCACTCCAC 59 43970331 43970349 CTGGCTCCTCAGTTAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105577.1 ENSRNOG00000055867 ENSRNOT00000048694 3 1 1 80 17 77085320 77085343 AGATTTCACCTCACATGCGA 60 77085384 77085404 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054807 ENSRNOT00000080211 3 1 1 60 1 141076291 141076309 AAACTTGCATCTGTTCGGC 60 141076249 141076267 CCACAGCAGAATCTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054622 ENSRNOT00000079029 2 1 1 60 1 241873536 241873558 GGAACGATACAGAGAAGATTAGC 59 241873498 241873516 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044063.1 ENSRNOG00000053910 ENSRNOT00000078002 2 1 1 83 19 54494637 54496054 ATACATAGGAAACCCTTCACTG 58 54496822 54496841 ATGAAACAGTGTTGTGACCT 58 Novel Rattus norvegicus 81 AABR07048308.1 ENSRNOG00000031590 ENSRNOT00000008002 2 1 1 96 5 71867620 71867638 TGACAACTTTGGCATCGTG 59 71867540 71867560 ATCACGCCACAGCTTAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058630 ENSRNOT00000085569 3 1 1 60 6 93920678 93920696 TATGAGCAGCTGCACTCTG 60 93920636 93920654 TAAGCTGCCCTTGTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123095.2 ENSRNOG00000041608 ENSRNOT00000063361 3 1 1 60 1 84017172 84017190 GTCAGGGAGGCATAGTGAG 59 84017213 84017232 GGGCTACATAGTAAGACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044128 ENSRNOT00000069395 1 1 1 61 20 46580490 46580508 CAGCAGCTAAGCAAGACTG 59 46580533 46580551 CAGTTCCCAACGTCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052375 ENSRNOT00000077954 3 1 1 60 1 35752540 35752559 TGTGTCAGTAGATGGCAGAG 59 35752499 35752519 TCATAGGTAAGAACACTGAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058578.1 ENSRNOG00000029243 ENSRNOT00000049445 1 1 1 60 7 125497212 125497230 CACCTTCACCATTACAGGC 59 125497170 125497189 GATGCTGGGAAGCATTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA54 ENSRNOG00000052577 ENSRNOT00000090108 2 1 1 60 1 216733169 216733188 GCTACAGGATTTCCAGTGAC 58 216733128 216733147 GACCTGAAACTGAAAGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013566.1 ENSRNOG00000056490 ENSRNOT00000074243 1 1 1 80 2 244543017 244543042 CAGGACTCAATGAGATCAAACC 59 244543078 244543101 GATATTTACTGGTCCTTTGAGCTG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035046 ENSRNOT00000053169 1 1 1 60 1 226610484 226610502 CACCGATCTCATCTGATCC 57 226610442 226610461 CCCATCCATGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031150.1 ENSRNOG00000058829 ENSRNOT00000081315 3 1 1 60 18 1758534 1758552 GTACTGGGAGGTGAAACTG 58 1758575 1758595 GTTCTTCCTCTTTAACAGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015737.1 ENSRNOG00000049420 ENSRNOT00000070952 2 1 1 60 14 73167603 73167622 AAGTTTCCTCACAGAGTCCT 58 73167644 73167663 TGAGAGTGCCTGTCTTATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056380 ENSRNOT00000077501 2 1 1 69 4 101489068 101489088 CTACCACCTACAGGTATAGCA 58 101489019 101489037 TTCTGTGCCACCTACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063425.3 ENSRNOG00000056970 ENSRNOT00000087960 1 1 1 90 6 30643573 30643591 GATCCCTACAACTCGGTGG 60 30639100 30639118 AGGTCTCCAAGGTGAACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055682.1 ENSRNOG00000025340 ENSRNOT00000034404 3 1 1 81 7 7840100 7840121 GCAGATAGTGATAGTTTGTGCA 59 7840039 7840063 GGTCTTGATTATACAGATGGAACG 60 Novel Rattus norvegicus 81 U4 ENSRNOG00000057210 ENSRNOT00000088875 1 1 1 60 6 75099457 75099476 ATAACCACAGAGCTTAGGCA 59 75099495 75099517 TTCCTTAAGAGATCCTACCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.2 ENSRNOG00000059138 ENSRNOT00000083129 2 1 1 60 5 59113521 59113541 ATCGTTTCCAGATGAGAATCC 58 59113481 59113500 ACAATCTCTGAAGGACTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.3 ENSRNOG00000059214 ENSRNOT00000058446 3 1 1 93 4 101949326 101949732 GATCCAGGAAACCAGTGGT 59 101949788 101949807 TGACTTGCAAGAGATGGAGG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000055135 ENSRNOT00000080310 1 1 1 126 10 93386325 93386344 ATAAGCTCTGCTGTGATCAG 58 93386433 93386451 CTACCACAAGTTACACGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001899.1 ENSRNOG00000058436 ENSRNOT00000089298 2 1 1 80 1 61504199 61504217 CCTGAACTCTGCTCAGAGG 60 61504258 61506968 CAGTAGTTCTCAACAGAGACCA 60 Novel Rattus norvegicus 81 AABR07061005.1 ENSRNOG00000059007 ENSRNOT00000082333 2 1 1 83 4 102665568 102665868 TGGATTCCTGGAGCAACTG 60 102665915 102665933 GATGGAAGCTGACTCTCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059747 ENSRNOT00000087317 1 1 1 60 14 85784474 85784492 AAGAGGCTGTGTCTACACG 60 85784432 85784453 CTAGGCTACTAAACACTCAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052085.1 ENSRNOG00000005951 ENSRNOT00000007800 1 1 1 60 3 35748879 35748898 GGCAATTACAACAACCAGTC 58 35748921 35748939 TGCTTCCAAAGTTTCCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0699.2 ENSRNOG00000051079 ENSRNOT00000076509 3 1 1 60 10 70223150 70223171 TTATGGAGTGTCAGATCCTGAG 59 70223111 70223132 CCAAAGTCTTAAATCACCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370,ENSRNOT00000090367 2 2 2 80 2 257542451 257544728 CGTCAGACAAAGGTTCGAG 59 257542389 257542408 GAGACCCTTTGTCTTTGGTG 59 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000054091 ENSRNOT00000083081 2 1 1 60 20 5153030 5153048 GGTTTGGAAAGGTCTGGGA 60 5152988 5153006 TCTGTGGGATGGTTGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056272 ENSRNOT00000078460 2 1 1 63 6 82137839 82137860 CAGCAGCCATACTAATATTGGA 58 82137884 82137902 ATCACCTTTGGGTAGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056272 ENSRNOT00000078460 3 1 1 63 6 82137826 82137844 ATGCTCACTAAAGCAGCAG 58 82137870 82137889 AGGGACAAAGATAACCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U11 ENSRNOG00000053931 ENSRNOT00000081762 2 1 1 60 1 20389053 20389074 GACATCAAGAGATTTCGGAAGC 60 20389095 20389113 GACCAATGATCACCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109023.1 ENSRNOG00000055888 ENSRNOT00000077254 1 1 1 81 4 88082677 88082698 AGCCAATATGTTTCTCTGCT 57 88082739 88082760 CATTTGGCAGGAAATCATATCC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035293 ENSRNOT00000053416 3 1 1 60 6 114332874 114332892 CCCAATCTCGTCTGATCTC 57 114332915 114332934 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054606 ENSRNOT00000090135 3 1 1 60 13 14773202 14773220 CAATAGGTGGCAGTGAGGA 59 14773242 14773262 GATTTCCACCAGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059797 ENSRNOT00000087663 3 1 1 60 13 80950648 80950666 GACTGCTATGTCACGTGTG 59 80950606 80950625 GCAATCAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056284 ENSRNOT00000086655 3 1 1 60 6 74187159 74187181 GATACAGAGAAGATTAGCATGGC 59 74187201 74187219 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057976 ENSRNOT00000091632 3 1 1 62 3 156106687 156106709 CGATACAGAGAAGATTAGCATGG 59 156106729 156106749 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059255 ENSRNOT00000079074 3 1 1 64 20 45357215 45357239 TACTAGAGAAGTTTCTCTGACTGTG 60 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0032.5 ENSRNOG00000058784 ENSRNOT00000087909 3 1 1 84 20 3171853 3199251 GATTCTTAGCAGGTGGTGG 58 3171787 3171805 CATTGTCCAGGAGTTGCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051376 ENSRNOT00000077251 1 1 1 60 6 78223271 78223293 GGCAGCACATATACTAGAATTGG 60 78223233 78223253 TCATGAATTTGCGTGTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060068 ENSRNOT00000079594 1 1 1 60 13 107096103 107096123 GCTGTGCCATATGTGTATCAG 59 107096063 107096082 CACTGAGTGCAGACATAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054189.1 ENSRNOG00000033100 ENSRNOT00000044465 2 1 1 60 3 143828762 143828782 ACTTTGCCAAATACTTCCTCC 59 143828802 143828822 ATCAGTTTCTCAGCATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060744 ENSRNOT00000086811 3 1 1 60 4 125904886 125904907 TGAAATGGAGACATTCTGACAG 59 125904925 125904946 GAAAGATACTAACAGCCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055461 ENSRNOT00000082980 3 1 1 61 3 176293433 176293453 CCAATGAGGTTTATCCAAGGT 58 176293392 176293416 GGATCTGTAGATTGAACTCAAATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053968.1 ENSRNOG00000060762 ENSRNOT00000084221 2 1 1 60 3 133894434 133894452 GTCCATCCTCATACTCGCT 59 133894392 133894411 TCCCTATGACCATATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020711.1 ENSRNOG00000050665 ENSRNOT00000075571 2 1 1 60 13 36335085 36335103 CCTTTCTTCTTTGCCTGCT 58 36335043 36335062 TGGAAGTCCAAGGATCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059648 ENSRNOT00000091425 1 1 1 61 6 66031684 66031704 AGAGACACTATGTCTACCCTC 58 66031726 66031745 TCTCTGACTTGCTCTTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059603 ENSRNOT00000082534 3 1 1 60 13 58233354 58233376 TACAGAGAAGATTAGCATGGTCC 60 58233393 58233414 TATCTTTCTGCTGAAGACACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054703 ENSRNOT00000079067 2 1 1 60 3 123956947 123956967 CCAGCAAGTTCAATAGCTGAG 59 123956907 123956930 GTATTCTGAACTGGGTTATGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019230.1 ENSRNOG00000058463 ENSRNOT00000084440 1 1 1 81 15 95185350 95185371 TGCATTCATGTTCTCCTATGTG 59 95053131 95185308 ATCTTTGGTACTTGTGCGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054343 ENSRNOT00000088667 3 1 1 61 13 98915002 98915025 CGATACAGAAGAGATTAGCATGAC 59 98914964 98914982 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gosr1 ENSRNOG00000003971 ENSRNOT00000077038 3 1 1 80 10 63412628 63416118 GACATTCTGCAGGATTATACAC 57 63416158 63416177 CATGAGATTCTCCCTTTCCC 58 Novel Rattus norvegicus 81 SNORA67 ENSRNOG00000052115 ENSRNOT00000080700 1 1 1 60 10 56272257 56272275 AGCAACTTGGAAGAAAGCC 59 56272215 56272236 GAAACAAGTATTCCTTGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053198 ENSRNOT00000088927 2 1 1 60 13 19138311 19138332 ATACAGAGAAGATTAGCATGGC 58 19138352 19138371 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060756 ENSRNOT00000078115 2 1 1 61 3 51030736 51030754 AATGAGGTTTATCCGAGGC 57 51030693 51030711 GTGAGGGCCTAGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014882.1 ENSRNOG00000057975 ENSRNOT00000088178 3 1 1 83 14 35776217 35776237 AGTGGTTCTTCAGAGATGGA 58 35760294 35760312 GTGTCCCACAAAGCTTGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052382 ENSRNOT00000083334 1 1 1 60 20 22774552 22774570 GAAGATTAGCATGGGCCCT 60 22774593 22774612 CCTGAAGGAAATGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057888 ENSRNOT00000078106 1 1 1 60 20 42522372 42522393 GAACGACACAGAGAAGAATAGC 59 42522333 42522352 TCTTCACGAATTTGCATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060764 ENSRNOT00000081276 3 1 1 60 13 66565006 66565027 GATGCAGAGAAGATTAGCATGG 59 66564967 66564986 GAACACTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052250 ENSRNOT00000079163 2 1 1 60 13 6651628 6651648 GTTAGTAAGTGGCACAGAGGA 60 6651588 6651606 TGTTCACAGGTGAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041453.1 ENSRNOG00000055211 ENSRNOT00000084149 2 1 1 62 X 130664068 130664086 CCAGCATTTGTTGTCACCC 60 130664022 130664041 TGAGATTTCACCTCACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051939.1 ENSRNOG00000054249 ENSRNOT00000088418 2 1 1 60 3 29600436 29600458 CTAGAGTGACTAGTGAGAGTGAG 59 29600475 29600496 TTAGTGTTCAGTCTCTTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053065 ENSRNOT00000084026 1 1 1 60 15 4539084 4539102 CCACAGCCAATTAAAGCAC 58 4539126 4539144 GCTCTCCACAGTCATTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029809.1 ENSRNOG00000060742 ENSRNOT00000083485 3 1 1 80 10 52478491 52478514 AGATTTCACCTCACATGCGA 60 52478430 52478450 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AC141516.1 ENSRNOG00000054109 ENSRNOT00000077156 1 1 1 106 11 87118386 87118406 CCAGACGGTGAGATCTCTG 59 87118298 87118319 ACACAGCAATTTAGACTAAGGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000052426 ENSRNOT00000084497 2 1 1 60 7 109352424 109352442 CAGTCAAAGAGGACAACCC 58 109352382 109352403 TCATATACCCTTGACTGAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057150.1 ENSRNOG00000058424 ENSRNOT00000090748 2 1 1 80 7 57814159 57816501 ACCTATTATGGTAACTTGCGG 58 57814099 57814120 ATTACAGGAGATCACAACAGAG 58 Novel Rattus norvegicus 81 AABR07057353.1 ENSRNOG00000047073 ENSRNOT00000074732 3 1 1 60 7 67140033 67140052 TTAGCTGGATGTGGTACTGC 60 67139992 67140011 TCATCCTGCCTATACCTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054120.1 ENSRNOG00000045370 ENSRNOT00000070637 3 1 1 71 3 142141740 142141758 TAGCAAGTTGGCATTCTGG 58 142141792 142141811 AACTATGCTGACATCCTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000054973 ENSRNOT00000090384 2 1 1 60 3 12011154 12011172 TGGTGAGCTGACAGTAAGC 60 12011196 12011214 AGTCACCCACATGTAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058689 ENSRNOT00000088633 3 1 1 60 3 4092861 4092880 GTGGCTATTTCTACGCTCAG 59 4092820 4092842 CAGGCTACAAACCATTCTTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058706.1 ENSRNOG00000054803 ENSRNOT00000080179 2 1 1 60 7 133979817 133979840 GTATTGAGACTAGAGTCACATCCT 59 133979858 133979877 TACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056229 ENSRNOT00000091459 2 1 1 60 20 2611115 2611135 CTGTCTACACATTGATCACCA 58 2611152 2611175 CATCCTTAGAGCTAGTTAGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.4 ENSRNOG00000051298 ENSRNOT00000076301 1 1 1 60 X 70422980 70423003 TCTTTCTGTCTGACCTCTATACTC 59 70422943 70422964 ATAGGTAAGACAAGGACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060531 ENSRNOT00000081005 1 1 1 60 19 37117712 37117734 CGATACAGAGAAGATTAGCATGG 59 37117754 37117772 AACGCTTCACGTATTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000051692 ENSRNOT00000082406 3 1 1 61 7 80815629 80815647 CTGGCTGAGTGAGTAAGAC 57 80815586 80815607 AGTAATGAACCATGCTAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054968 ENSRNOT00000090088 3 1 1 61 7 15051514 15051534 GAGACACCATGATCATGAAGG 59 15051473 15051495 ACATCCCAAGTACAGTAGATGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000055021 ENSRNOT00000089427 3 1 1 68 3 6083981 6083999 TGACAAGGATGGAAGAGGC 59 6083931 6083949 ACAAAGTAGGTGGCAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA46 ENSRNOG00000057075 ENSRNOT00000080595 2 1 1 61 19 9729514 9729535 AAACCTATGGATGGGAAATGTC 59 9729557 9729575 CCAGGAATTCTTCTCGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000057925 ENSRNOT00000086255 2 1 1 60 10 61753912 61753932 AAGTCAATGATGGTTAAGCCC 59 61753954 61753972 ACTGCATCACAAAGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000057925 ENSRNOT00000086255 3 1 1 60 10 61753913 61753932 AGTCAATGATGGTTAAGCCC 58 61753954 61753973 GACTGCATCACAAAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029863.2 ENSRNOG00000057661 ENSRNOT00000087455 1 1 1 60 10 56590741 56590759 GAGGGAAACATCAATCCCG 58 56590783 56590801 CCCTCTGACATTACTTCCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112001.1 ENSRNOG00000057296 ENSRNOT00000083751 1 1 1 80 2 2038268 2038290 AGATTTCACCTCACATGCG 58 2038333 2038352 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AABR07001048.1 ENSRNOG00000049434 ENSRNOT00000073791 3 1 1 80 1 35526902 35526923 TTGTTGGTGGAATGAACTGG 59 35526966 35526984 TCAGGTAGTGCAATGTCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060279 ENSRNOT00000091836 1 1 1 65 13 65288983 65289001 GACTGCTGTGTCACATGTG 59 65288936 65288955 ACATTGAGCATAAACAGGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043573.1 ENSRNOG00000046882 ENSRNOT00000054555 1 1 1 60 19 29481762 29481780 GGCTGTCTTGCTTAATGCT 59 29481804 29481822 TTAACGGCTGAGCCATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034421 ENSRNOT00000052544 2 1 1 60 7 56875558 56875579 ACCTGATCTTGTCTAATCTCGT 59 56875519 56875537 TCCCATCCAAGTCCTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052072 ENSRNOT00000082018 1 1 1 60 19 14012781 14012802 GTAGGTGACAGAAAGAAGTGAG 59 14012817 14012841 CAGATAGTCATAGGTTTGAACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034730.1 ENSRNOG00000046027 ENSRNOT00000071362 2 1 1 80 11 85475143 85475166 GAGATTTCACCTCACATGCG 59 85475208 85475227 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000061074 ENSRNOT00000077984 3 1 1 60 18 69588423 69588445 CCTGACTTATCTCAGTTGATTGC 60 69588463 69588483 ACACGTAGAATAGGCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002119.1 ENSRNOG00000055247 ENSRNOT00000082190 2 1 1 60 1 66638855 66638875 CGGATGTTGTTTGACTACCTG 59 66638815 66638836 GCATATCTAAGTACTCCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054361.1 ENSRNOG00000031275 ENSRNOT00000051667 2 1 1 60 3 149943070 149943089 CACATGGGAGTTTCTCAGAC 58 149943029 149943048 TCCATCCTGTTTCAGAACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.1 ENSRNOG00000053661 ENSRNOT00000082447 1 1 1 80 4 164119586 164119607 GGAATGGATGTAAACAAACCTG 58 164115966 164119548 GAAGGAACTTCAGTTCATCCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052263 ENSRNOT00000086199 3 1 1 67 4 55633610 55633628 TTATCCATTGCACTCCGGA 59 55633561 55633579 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130053.1 ENSRNOG00000049798 ENSRNOT00000071763 3 1 1 64 3 163658451 163658469 TTTCTCTGTGTAGCCCTGG 59 163658497 163658515 CTTGAGTTCAAAGCCAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109837.1 ENSRNOG00000053934 ENSRNOT00000073331 2 1 1 82 15 110436371 110437194 CGGGACCACAGAAATAGCA 60 110436307 110436325 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058823 ENSRNOT00000087885 3 1 1 60 18 20841847 20841865 TGCCACATGTGCATTTGTC 60 20841884 20841907 AGAACACTCAGTGTAGACATAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102556347 ENSRNOG00000049911 ENSRNOT00000085961 1 1 1 88 11 33813364 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054092 ENSRNOT00000084978 3 1 1 60 18 51319739 51319759 GTAGGTGACAAGAGACATGTC 58 51319775 51319799 CTAATCATTCTGATGTTCACAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000055018 ENSRNOT00000090806 3 1 1 60 5 38932348 38932367 AGGGTAAAGGAAGTCTCCAC 59 38932307 38932327 ACAGGATCTAAAGAGGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.1 ENSRNOG00000052226 ENSRNOT00000081761 3 1 1 90 X 123803252 123805426 TACTATGTGTCCAAGGGCC 59 123803180 123803199 AGGAACAGATGACCATAGCT 58 Novel InUTR Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056511 ENSRNOT00000082954 3 1 1 60 7 117016976 117016995 TCTACACTTGGACAGACTGG 59 117017018 117017036 TCTGGTGACAGATACAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055844 ENSRNOT00000077674 1 1 1 60 7 73212518 73212538 GTTGACAGAATTTGAGCTTGC 59 73212478 73212499 TGAGGAAGAGAACACTATAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054562.2 ENSRNOG00000054123 ENSRNOT00000084056 1 1 1 60 3 160572542 160572561 GGCCTTGATTTCCTTACCAG 59 160572584 160572602 TTGCAGTGTCTCGAGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000060483 ENSRNOT00000091400 2 1 1 105 X 119210181 119210199 ATCAGGACAGGTACAGCAC 59 119210094 119210112 GTACAGGCCTCTAGAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039202.1 ENSRNOG00000041435 ENSRNOT00000063188 3 1 1 60 X 71470010 71470032 CCTTGAACTCAAGAGATCTACCT 59 71469972 71469990 GTGCATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060774 ENSRNOT00000090511 1 1 1 73 18 26426382 26426402 CCCATTCAGTAGCACATACAC 59 26426437 26426455 CTGTCATCCTTGTGCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052686 ENSRNOT00000084115 1 1 1 60 18 28589986 28590006 GAAAGGATGGAGGGACTACTG 60 28589946 28589967 ACAAGGTAAGTAGAAATGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040532 ENSRNOT00000062285 1 1 1 60 7 52188825 52188846 TCAGAAGCTAATTGCAGTTAGG 59 52188867 52188885 GGTATCCCAGGTTGGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Aim1l ENSRNOG00000057957 ENSRNOT00000089849 3 1 1 80 5 152309593 152309612 CAGTGTGGGTTCACTAAAGC 59 152309948 152310251 TCATACACCACAGCCTTGG 60 Novel Rattus norvegicus 81 AABR07057678.1 ENSRNOG00000024507 ENSRNOT00000037006 2 1 1 69 7 83803064 83803082 TACCTCCTGACAGTCTCCT 59 83803117 83803135 TTTGACTCAAAGGAGCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD94 ENSRNOG00000055675 ENSRNOT00000083533 1 1 1 60 4 99797599 99797618 CTGAATGTATGTGCTCTGCC 59 99797558 99797578 CATGTATGTGAATGCCGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029504.1 ENSRNOG00000061927 ENSRNOT00000090496 1 1 1 60 10 31195753 31195774 AGTAAACAATGACTTGTCCCAG 59 31195795 31195813 GAGGAGAAGGTCACACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029504.1 ENSRNOG00000061927 ENSRNOT00000090496 2 1 1 61 10 31195752 31195773 GAGTAAACAATGACTTGTCCCA 59 31195795 31195813 GAGGAGAAGGTCACACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037447.1 ENSRNOG00000051689 ENSRNOT00000089850 1 1 1 60 X 20846199 20846219 GCTTTCTCTTTCATCTTGCAG 58 20846159 20846177 AGAAGCAGTCAGCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017786.1 ENSRNOG00000055146 ENSRNOT00000086675 1 1 1 60 15 31072453 31072472 GCAATATCTCAATGAAGCCC 57 31072495 31072513 GGTCCTCTTGTTGTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017786.1 ENSRNOG00000055146 ENSRNOT00000086675 3 1 1 60 15 31072367 31072385 CTGGTTCTTGTCACAGAGG 58 31072407 31072427 AATAAGTAGTCTGGTAGGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053666 ENSRNOT00000077120 2 1 1 60 18 16511479 16511501 GGAACGATACAGAGAAGATTAGC 59 16511521 16511539 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098462.2 ENSRNOG00000055843 ENSRNOT00000090337 3 1 1 86 1 63290168 63290189 TTCTTGATGAGACTCAGAAGCT 59 63288222 63290121 TTCTATGCCCACAACCCTG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058763 ENSRNOT00000083080 1 1 1 79 X 119811288 119811306 GCTCACTTCAGCAGTACAC 59 119811349 119811367 AACATGTCATCCTTGCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019120.1 ENSRNOG00000049068 ENSRNOT00000075362 3 1 1 60 15 89995860 89995879 CACGGATGAACTGATCAGGA 60 89995819 89995840 AGATTTCAAGGCATCAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041586.1 ENSRNOG00000051662 ENSRNOT00000073098 3 1 1 100 X 133954863 133954882 AATGGCAACCAACAGATTGG 60 133954780 133954802 CTCCCTGTGGTCTAACTTGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000052447 ENSRNOT00000087273 1 1 1 60 15 32756614 32756634 AAAGACAACCTTACCCGAGAG 60 32756656 32756674 GCAGCTGCTCATATACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057576 ENSRNOT00000078293 1 1 1 60 15 89135113 89135134 TGTGCTATGTCTACTCTCAGTG 59 89135152 89135173 TGTTAGGGTGCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061825.1 ENSRNOG00000059964 ENSRNOT00000078967 3 1 1 80 4 147918484 147918502 ACCAAATGCTCTTGTCGAC 59 147918421 147918444 CACATTCAAGATCCCATCTACTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060447 ENSRNOT00000082563 3 1 1 60 5 151016637 151016656 AACATTGGAACGACACAGAG 59 151016679 151016697 GGATTTGCGTGTCATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117101.2 ENSRNOG00000050502 ENSRNOT00000073382 2 1 1 60 15 28869990 28870010 CTTGAACTCAGAGATCCACCT 59 28870032 28870050 TTGGCCATGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044765.1 ENSRNOG00000050313 ENSRNOT00000075759 2 1 1 60 20 19864249 19864270 CTTGAACTCATAGAGATCCACC 58 19864291 19864309 GAGCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549158 ENSRNOG00000056964 ENSRNOT00000089651 2 1 1 60 11 28056537 28056556 TTTCATTGTCCCTCCTCCAC 60 28056579 28056597 CCCAACCTTCACCTTTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000060835 ENSRNOT00000086012 1 1 1 60 15 66966250 66966268 TTGCCATTGATGATCGTGC 59 66966292 66966310 CTCAGACTGCATTCCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058090 ENSRNOT00000088128 2 1 1 61 11 68597921 68597941 TATACCAGGATCAGGAAGGTG 59 68597964 68597982 CACATCCCATGTGCAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053858 ENSRNOT00000091478 1 1 1 60 20 29693432 29693450 GGCAGATGTATCCCTCACC 60 29693390 29693411 TTACTGAACAAAGTGAGTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000059119 ENSRNOT00000087821 3 1 1 60 20 2219528 2219547 TCAACGACAGGTTGTATTCC 58 2219569 2219588 GGTAGGTTTACTCTGCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065589.1 ENSRNOG00000053429 ENSRNOT00000079092 3 1 1 61 6 135877822 135877840 GATCCAAGCCACTGAACCT 60 135877779 135877797 TGTGGTCCGAGAATACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055280.1 ENSRNOG00000046183 ENSRNOT00000074061 2 1 1 60 7 1045611 1045629 CTAGTGAAGTTAGCCCACC 57 1045569 1045587 TGTTCTTTGGAAGGAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117869.1 ENSRNOG00000031439 ENSRNOT00000041965 1 1 1 60 19 44267832 44267851 AGTACAAGTTACTGGAGCCT 58 44267872 44267892 ATATCCACACCAGCAAATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060980.1 ENSRNOG00000056052 ENSRNOT00000083239 2 1 1 81 4 102147226 102147245 GTCAGGACATAGTATGGCCA 59 102147289 102147427 ATCACATCTGGCACCTGAG 60 Novel InUTR Rattus norvegicus 81 SNORA44 ENSRNOG00000057066 ENSRNOT00000077536 1 1 1 60 11 54256359 54256377 AGAGACTTTGACAGCCCAG 59 54256399 54256419 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050160.1 ENSRNOG00000041443 ENSRNOT00000063196 1 1 1 60 5 153861513 153861532 ATTAGGCTCACAAACGACGA 60 153861472 153861490 CCCAAATACTTCCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054193 ENSRNOT00000078385 3 1 1 60 7 124020913 124020933 AGTCCTCACTGCTTATGTGAG 60 124020954 124020973 GTCGCCTTAGATAGCAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD66 ENSRNOG00000056119 ENSRNOT00000089119 3 1 1 60 11 83915942 83915960 TGATGACGTCTGTTAGTGC 58 83915900 83915919 ATCCTCAATCCCATCATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056311 ENSRNOT00000087900 2 1 1 60 19 56580588 56580611 CCAGAAGGTTGTGAATTATCTCAG 60 56580551 56580570 AGAAACAGAAGTCCAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000056311 ENSRNOT00000087900 3 1 1 61 19 56580588 56580611 CCAGAAGGTTGTGAATTATCTCAG 60 56580550 56580570 TAGAAACAGAAGTCCAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000056138 ENSRNOT00000088423 2 1 1 60 19 22964768 22964786 CTGGACTTCTAGGCTGCTG 60 22964726 22964744 CCAGAGTGCCTTAGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053809 ENSRNOT00000085136 2 1 1 60 5 128628231 128628253 GGACATATACTAAAGTTGGTCCG 59 128628193 128628211 CTATCACTCATGAGCAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000057533 ENSRNOT00000084424 3 1 1 60 18 25475143 25475162 TGCACACTATTAAAGCCCAG 58 25475102 25475121 TCCGACATTCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 1 1 1 82 7 121773598 121773618 AAGACCCTTGACTGCACTC 60 121773664 121773682 TTGATCCTCTCCTGGAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000052604 ENSRNOT00000087916 3 1 1 80 13 56763958 56763977 GGTTCTGTAACCTGTTGCTC 59 56759408 56763916 TGCATGCTATTCCTTCACCT 60 Novel Rattus norvegicus 81 AABR07031972.1 ENSRNOG00000046899 ENSRNOT00000072730 3 1 1 60 18 41434254 41434272 CTGCTGCCTACAAGTTTGG 59 41434212 41434233 CTGTAGAAATCTGCATAAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033045.1 ENSRNOG00000000713 ENSRNOT00000000903 3 1 1 60 11 2785972 2785991 GCAGAATCTCGAGTGAACAG 59 2785931 2785951 AGTATAAACAACACTGCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057382 ENSRNOT00000086227 2 1 1 60 18 15349908 15349926 GGATTTGCTGATCCCTGTG 59 15349949 15349968 TATCACAGAATCTGCAGTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052496 ENSRNOT00000080728 3 1 1 60 18 53015929 53015947 ATGGTACAGAGAAGAGCGG 59 53015970 53015989 ACGCTTTACAAATTTGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061437 ENSRNOT00000077190 3 1 1 67 11 67314312 67314333 CGGCATGTCTATTTAACATTGG 58 67314266 67314284 TTGTACATCATCCTTGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054190 ENSRNOT00000086664 3 1 1 60 11 85373445 85373465 TACAGAGAAGATTAGCCATGC 58 85373486 85373505 CGAACACTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.1 ENSRNOG00000049084 ENSRNOT00000072234 3 1 1 60 9 34552837 34552855 TCCAAACGAATCAGCTACC 58 34552795 34552814 ATCCTCAGAGACCAGATTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061098 ENSRNOT00000086292 3 1 1 82 5 149367960 149367978 TAGAGGCACTGCAGATGTG 60 149368023 149368042 CACTGAGCATAGACATCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060372 ENSRNOT00000080642 1 1 1 60 11 421110 421129 AGCCAATGAGGTTTATCCGA 59 421069 421088 GACAATGAAACCCAAAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060372 ENSRNOT00000080642 2 1 1 60 11 421120 421139 GCAGTATCGTAGCCAATGAG 59 421079 421098 CCCAAAGCACATTCTTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027388.1 ENSRNOG00000031706 ENSRNOT00000041892 1 1 1 60 17 27765454 27765473 GGGACACTCTGAAAGAAGAC 58 27765413 27765433 CACTTTCTGCCCAATCAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055195 ENSRNOT00000089711 2 1 1 60 19 21892775 21892793 ATAGAGGAGAGGCTGTGTC 58 21892733 21892754 TTCTACTCATTCAGATGTCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059760 ENSRNOT00000083192 2 1 1 60 6 57819901 57819920 CCAAACAAGCTCTCACAGTC 59 57819940 57819961 CATTTATATGTTGCCCATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015112.1 ENSRNOG00000058903 ENSRNOT00000084585 2 1 1 87 14 47268303 47268322 CACAATCAAACAGGTGAAGG 57 47268370 47268391 CCTTTGGTTTATATCCAGGGT 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000056824 ENSRNOT00000090116 1 1 1 60 19 22568622 22568641 TAGGTGAAAGTTCCCTCTCC 59 22568661 22568682 ATATCCAGTTTCAGGAAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015165.1 ENSRNOG00000057821 ENSRNOT00000079316 2 1 1 84 14 48169818 48169840 GTAAGAAATATGGTGTGGACCTC 59 48169878 48169905 CGAATAGTATCGTCTATGTTAGAGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034772 ENSRNOT00000052895 3 1 1 60 19 42305967 42305985 CCCGATCTCGTCTGATCTC 59 42305925 42305944 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC102976.1 ENSRNOG00000057798 ENSRNOT00000086690 1 1 1 60 19 24656294 24656315 CTTCACCAACAGAATACAAGAG 57 24656333 24656354 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031784.1 ENSRNOG00000061202 ENSRNOT00000086315 1 1 1 60 18 34661552 34661570 GATGCTGATTCAGGCAGTC 59 34661510 34661530 CTGGGAGCTTGTTATCTATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058319 ENSRNOT00000079663 3 1 1 60 18 74218080 74218099 CTTCCCTGTAGAGGAGAACC 59 74218039 74218058 ATGAAGGAAAGCAGCTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000080320 1 1 2 92 6 139487217 139487238 CACTTATTACTGTGCAAGACAC 58 139487554 139487572 GAGACAGAAAGGCAGAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000080320 3 1 2 93 6 139487217 139487238 CACTTATTACTGTGCAAGACAC 58 139487554 139487573 AGAGACAGAAAGGCAGAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068712.1 ENSRNOG00000056280 ENSRNOT00000088483 1 1 1 60 9 116297949 116297967 ATGTCAAGCTGCACTACTG 58 116297907 116297925 AATCGATTCCTGACGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128303.2 ENSRNOG00000059712 ENSRNOT00000085048 2 1 1 80 6 93371398 93371419 GCTTCCCTATCTCATGTTGG 58 93371462 93371480 CTCTGCTTGGTGTCTACCT 59 Novel Rattus norvegicus 81 AABR07034573.3 ENSRNOG00000059468 ENSRNOT00000073785 1 1 1 81 11 78975757 78975779 TCACCTCACACCAGAATGG 59 78975694 78975713 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07003944.1 ENSRNOG00000057110 ENSRNOT00000083396 1 1 1 81 1 121466793 121466815 TCACCTCACACCAGAATGG 59 121466730 121466749 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07030823.1 ENSRNOG00000046001 ENSRNOT00000072687 2 1 1 179 10 105283580 105283598 TACTGCAGGAGTTTGAGGA 58 105283417 105283437 AGTCAAAGTTACCTTTGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052098 ENSRNOT00000079903 2 1 1 61 11 11772992 11773013 GTCATTCATTACATTAGGTGGC 58 11773032 11773053 AGGTCAGAACATTGTAGTAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052098 ENSRNOT00000079903 3 1 1 62 11 11772994 11773015 CATTCATTACATTAGGTGGCAG 58 11773032 11773056 CATAGGTCAGAACATTGTAGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130162.1 ENSRNOG00000034030 ENSRNOT00000049830 2 1 1 80 16 49396363 49396643 CTCCTTTCTCTTAGGCAACC 58 49397319 49397337 GGAGTATTTGATCGGGTCC 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041962 ENSRNOT00000063715 2 1 1 60 10 10420231 10420254 TCTACAGTCATATCACCATCACTC 60 10420273 10420291 TGCTTAGCTTCCAAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0436.1 ENSRNOG00000059866 ENSRNOT00000087728 3 1 1 60 1 43563935 43563955 AATCTCTGTGAAGTGGATGTG 58 43563895 43563916 CTGAGAAGGTTAGGTTTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054880 ENSRNOT00000081793 2 1 1 60 5 71411815 71411834 GGCTGCTAAATCTGTCAACC 59 71411856 71411875 TTAGTAAGCCAGTTCAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051525 ENSRNOT00000090158 2 1 1 60 7 37366445 37366469 CATTAAGGATATGTGAGTGACTGTG 60 37366483 37366505 CTCTTGAGAACTTATTTGGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fmr1nb ENSRNOG00000053397 ENSRNOT00000090728 1 1 1 83 X 154645555 154648097 ACTAAGGGATAAGCCTACACAG 59 154645493 154645511 TACACAGGCAGAAATCCCA 59 Novel Rattus norvegicus 81 SCARNA17 ENSRNOG00000061205 ENSRNOT00000081598 1 1 1 60 18 70733439 70733460 TCCTTATATGATCAGGCCTCTC 59 70733400 70733419 CATAATCCTCTCAGGCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059548 ENSRNOT00000083736 2 1 1 60 7 67545609 67545628 GCTCATCTGGATGATTAGGG 58 67545650 67545669 GCCCACATCTTTAGGAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008805.1 ENSRNOG00000046150 ENSRNOT00000071652 3 1 1 60 2 74714060 74714078 CCGTCCCTCAGTATACCTG 59 74714102 74714120 TTCTGTCATGGTGATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066826.1 ENSRNOG00000039790 ENSRNOT00000061048 3 1 1 109 9 17946182 17946201 CACAAAGCTCGAGTTATGGA 58 17944184 17946111 TGAACAGATTCTGCTGACAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061413 ENSRNOT00000084653 1 1 1 60 4 160416290 160416310 GAAGATCTGAGTTCTCTTGCC 59 160416329 160416350 GTAGTCAAGCATTTACCTTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064711.1 ENSRNOG00000046064 ENSRNOT00000071048 2 1 1 60 6 91332194 91332217 CTCTTTGGTTATTTCCTGAGTGAC 60 91332234 91332254 CGAATTTGTCTATTGTGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057508 ENSRNOT00000077779 1 1 1 61 9 43323787 43323807 CAATGAGGTTTATCTGAGGCA 58 43323830 43323848 CAGAAGAGGGCATCAGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060779 ENSRNOT00000084211 2 1 1 60 7 73298769 73298788 AGAGAAGACTAGCATGGCAC 60 73298808 73298829 CTCTTGTTGCTTTATGAACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055864.1 ENSRNOG00000046641 ENSRNOT00000074602 1 1 1 60 7 14155232 14155251 TGGAACTCACTCTGTAGACC 59 14155191 14155209 AGAGGCAGAAGTAGGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056857 ENSRNOT00000078728 2 1 1 62 7 116793261 116793279 GTGTCAGTAGGTGGCAGAG 60 116793305 116793323 ATGTCAGAGGTCAGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108351.2 ENSRNOG00000060783 ENSRNOT00000090244 2 1 1 68 7 143492762 143492780 CTCATACTGGGCCTTGACC 60 143492812 143492830 CTGTCCATGGACAACAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052462 ENSRNOT00000080164 3 1 1 60 6 34700089 34700107 AGCAGGTAGCAGAAAGGAG 59 34700128 34700149 TCATTCAGATGTTTGTCGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059272.1 ENSRNOG00000049486 ENSRNOT00000075112 1 1 1 60 4 13255449 13255467 CTCCTCTTCCTCTTCCACC 59 13255488 13255509 GCATGAAATAGAACACAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061452 ENSRNOT00000079635 3 1 1 60 17 25600752 25600773 CCTCAAACAGAAGAAACTCAGC 60 25600791 25600812 GAAAGTATAACCGCCATAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000053698 ENSRNOT00000089372 3 1 1 60 4 67208506 67208526 GGATTCTGGTCATTGGTACTG 59 67208466 67208486 CCTTCCAAATACAGGGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.2 ENSRNOG00000055056 ENSRNOT00000075587 2 1 1 80 4 173878384 173878405 AACACATGGAAACACTGGAC 59 173878323 173878343 CTTGAATTCTGTTGGTGAAGC 58 Novel Rattus norvegicus 81 AABR07048228.1 ENSRNOG00000054196 ENSRNOT00000091795 3 1 1 80 5 68209074 68209097 AGATTTCACCTCACATGCGA 60 68209013 68209033 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057268 ENSRNOT00000088953 1 1 1 60 17 43017112 43017131 TGTCGCTGCTATGTAATGTG 59 43017154 43017172 GTTCACAGGACAACCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007744.1 ENSRNOG00000045746 ENSRNOT00000074326 3 1 1 80 2 26812885 26812908 AGATTTCACCTCACATGCGA 60 26812824 26812844 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07057421.1 ENSRNOG00000047216 ENSRNOT00000072394 3 1 1 60 7 70287318 70287338 TGGCTGGATTCAAGTAATCCA 60 70287356 70287378 GTAATCAAGAATAGGCCTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076064 1 1 2 61 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70510213 70510231 TAGAAACTGGGACAGAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000057100 ENSRNOT00000083242 3 1 1 63 4 183217644 183217665 CAGCTTATTCATGTCACTTGGA 59 183217602 183217622 GTTGAGTTTACTACGTTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061461 ENSRNOT00000081563 3 1 1 60 10 7300096 7300114 GTGGCAGAGAAGAGTCAGG 60 7300054 7300073 CATTCAGATGTCCATGGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057673 ENSRNOT00000081273 1 1 1 60 9 73881260 73881279 ACAAGTGTATCAGGAGGTGG 59 73881299 73881320 GGTCAGAACACTGAGTATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043775.1 ENSRNOG00000054540 ENSRNOT00000088671 3 1 1 60 19 39655424 39655445 ACTCATTGACTTACACAGTCCT 59 39655385 39655408 CTCAATACTGTTGGAAGTAATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061530.1 ENSRNOG00000043588 ENSRNOT00000068855 1 1 1 60 4 131919684 131919702 GTCTTCTGAGCAGACCCTG 60 131919642 131919660 ATACAAACACGGGCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026063.1 ENSRNOG00000052943 ENSRNOT00000083358 1 1 1 80 16 62165422 62165444 CAGTCCTTACAAGCATTAACAC 58 62165484 62165504 ACAAGAAAGAGTAACTGCTGG 58 Novel Rattus norvegicus 81 AABR07041724.1 ENSRNOG00000052130 ENSRNOT00000085536 2 1 1 61 X 137733209 137733228 CACAGAATTCCTCCCAAGAG 58 137733167 137733185 AAGAAAGCAAGCCTTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680428 ENSRNOG00000042701 ENSRNOT00000065405 2 1 1 60 10 87808856 87808874 TGCTTCCTACCAACTTGCT 59 87808897 87808916 AGGTGGGTTTAATCGAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012301.1 ENSRNOG00000055916 ENSRNOT00000081253 1 1 1 60 2 192463407 192463425 CAACAGAAATGCCCTCCTG 59 192463449 192463467 TCTTTGGTGGACACTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067246.1 ENSRNOG00000047336 ENSRNOT00000075132 2 1 1 114 9 36475227 36475247 TTGGACCAGAGAAACACCT 59 36475131 36475155 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 Rn60_10_0890.5 ENSRNOG00000051024 ENSRNOT00000075953 3 1 1 156 10 89174615 89174633 AGAGTCCGGAACCTTTCTG 59 89174752 89174993 GGCTGTAACGTAAAGAAGGG 59 Novel InUTR Rattus norvegicus 81 AABR07042388.1 ENSRNOG00000052411 ENSRNOT00000085391 2 1 1 86 X 154739307 154739328 GAGAGGAAGATAGACTGGAGTG 59 154739372 154739397 TCTGTCAACAACATTCCTTCTC 59 Novel Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056,ENSRNOT00000075904 3 2 2 80 10 89185623 89185641 AAGTGAAGATGCCAGAGGT 59 89185682 89185782 GATCCTGGATAGTGAACCTCTC 60 Novel Rattus norvegicus 81 Rn60_10_0876.3 ENSRNOG00000061784 ENSRNOT00000065487 1 1 1 60 10 87731223 87731241 CATGGTGTCAGAGGTGGAG 60 87731265 87731283 TCCAAACCTTTCAACCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042397.1 ENSRNOG00000056855 ENSRNOT00000085224 1 1 1 60 X 154917756 154917774 TAAAGTATGCCTGGGTCCT 58 154917714 154917733 TCAATAGTGATACCACGCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060332 ENSRNOT00000092052 1 1 1 60 3 44774084 44774104 TCAAGGGTATACGAGTAGCTG 59 44774044 44774064 CAATAGCTTCAGCAGGATTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059684 ENSRNOT00000091118 3 1 1 60 13 22242749 22242768 TACTGTGTCATATGTGCCTC 57 22242708 22242727 ACTGAGCATAGACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044631 ENSRNOT00000069898 2 1 1 60 13 83992105 83992123 TCTCACAAGCTAAGCAGGG 59 83992063 83992084 ACACATATGTCAGTCTCCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044631 ENSRNOT00000069898 3 1 1 60 13 83992101 83992119 ACAAGCTAAGCAGGGTCAG 60 83992059 83992080 CTGAACACATATGTCAGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002779.1 ENSRNOG00000054614 ENSRNOT00000078369 3 1 1 60 1 84793060 84793078 AGAAATCGGAAGGAGGGTG 59 84793018 84793036 CTTGCTCTTCCTCTGTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.3 ENSRNOG00000061289 ENSRNOT00000086836 2 1 1 81 2 209849990 209850011 TCAAGGATCAAAGGGAATTGAG 59 209850053 209850087 TAGGTTACGGCCAACAGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000057741 ENSRNOT00000077660 2 1 1 60 8 71403701 71403720 CGGAGTAGATAAGGATGGCC 60 71403740 71403761 GGAGCATTTCATGAATTTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057741 ENSRNOT00000077660 3 1 1 61 8 71403699 71403719 TACGGAGTAGATAAGGATGGC 59 71403739 71403760 GAGCATTTCATGAATTTGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000054457 ENSRNOT00000083866 1 1 1 60 8 13871053 13871071 AGGTCATTTCAAAGAGGGC 58 13871094 13871113 TTTGGTCACAGCGTTAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037645.1 ENSRNOG00000045689 ENSRNOT00000075081 3 1 1 61 X 26467687 26467705 AGAAGTTAGACCACAGGGA 57 26467642 26467663 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060576 ENSRNOT00000091673 3 1 1 60 8 105317943 105317964 CCTAGAGGTATTGTAGATGTGG 57 105317904 105317922 TCTACTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105804.1 ENSRNOG00000053768 ENSRNOT00000088038 2 1 1 87 12 47277109 47277131 TCATCCCTAATTTGCTACACTG 58 47277180 47277198 CGTGCAGTTGTAAGCTGTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07072423.1 ENSRNOG00000060726 ENSRNOT00000089906 2 1 1 102 14 84610281 84611052 TTGTTAATAACAACTGGGCCAC 60 84612367 84612391 GTAGATATTTCCACAGATCTTCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052370 ENSRNOT00000078251 3 1 1 60 8 46591324 46591342 GCTGTGTCACATGTATGCC 59 46591282 46591300 CACTGAGTATCGACAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044880 ENSRNOT00000070147 1 1 1 60 8 64903645 64903664 TGATTTGGGAAGTTGAGCAG 59 64903604 64903622 TCACATCTTGTCTTCCGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052416 ENSRNOT00000081352 3 1 1 60 8 50872137 50872155 TCACATGTGTAGGTGGCAG 60 50872178 50872197 AACTGTCCACAGAAATGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024682.1 ENSRNOG00000055022 ENSRNOT00000080192 1 1 1 87 16 12123948 12124096 CAGACAAGAGTGAGAATGATTCTG 60 12123884 12123902 AGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000055465 ENSRNOT00000090176 3 1 1 60 8 128808843 128808862 TGCACATTGTTAGAGCTTGG 59 128808883 128808903 CCTACACTTAGGAGTTCATCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055520 ENSRNOT00000091366 2 1 1 61 8 2208888 2208911 GTATAAATAGAAGTGGGTCCTCTC 58 2208850 2208869 ATGGTTAGGAGCCAGTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044276.1 ENSRNOG00000059501 ENSRNOT00000072445 2 1 1 72 20 896889 896914 CTCTGCTATACCACTTCTACCC 60 896946 896965 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024795.1 ENSRNOG00000028958 ENSRNOT00000047499 2 1 1 60 16 16949618 16949636 CATGTTTGTGATGGGTGTG 57 16949659 16949678 ATTGCTGACAATCTTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024500.1 ENSRNOG00000056629 ENSRNOT00000091719 2 1 1 60 16 2061725 2061747 GTACACCTCTAGGATTTGATGAC 59 2061765 2061785 TCAAACTCTGTGACATCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053318 ENSRNOT00000083640 1 1 1 60 3 58648379 58648400 TGTCACATGTACATGTAGATGG 58 58648340 58648359 TCAGAGCACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.2 ENSRNOG00000056033 ENSRNOT00000085199 1 1 1 80 3 76007997 76008019 AGATTTCACCTCACATGCG 58 76007935 76007954 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SCARNA18 ENSRNOG00000061856 ENSRNOT00000080529 1 1 1 60 3 153072080 153072101 CAGTGAGAACTTGATCACTACG 59 153072041 153072059 AAGCACACTCCATCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA18 ENSRNOG00000061856 ENSRNOT00000080529 2 1 1 60 3 153072080 153072100 AGTGAGAACTTGATCACTACG 58 153072040 153072058 AAAGCACACTCCATCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056926 ENSRNOT00000087681 2 1 1 60 3 146718695 146718718 GATACAGAGAAGATTAACATGGGC 60 146718658 146718676 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051794 ENSRNOT00000091997 1 1 1 60 3 160272664 160272682 GTGCGTCAGTAAGTGACAG 59 160272704 160272724 TTCATAGAGCAGAACCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 1 2 2 80 14 32869829 32869849 ATTCTCAGGTTCATCCAAACG 59 32856122 32869789 AGTATAAGAAGGCTCTGTCCA 58 Novel Rattus norvegicus 81 AABR07031247.1 ENSRNOG00000052385 ENSRNOT00000086877 3 1 1 81 18 5585538 5585558 ACACCTTCCTTCAAGAAACTG 59 5585600 5585737 TGCTTTAAAGATGCTGCCTG 59 Novel Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000079012 1 1 2 70 14 36596310 36596328 CAATGACTGTGCCTTGGTC 59 36590324 36590342 TCCAATATTCTGCTCGCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07046819.1 ENSRNOG00000053781 ENSRNOT00000080473 2 1 1 80 5 8047830 8047851 ACACTAAGAAAGATGCATGTGC 60 8043912 8047793 GACAGTTGTCATTTGTACTCCTG 60 Novel Rattus norvegicus 81 AABR07062769.1 ENSRNOG00000054134 ENSRNOT00000087647 1 1 1 92 6 7180809 7182070 CATTGGAAGCTTTCATCTGGA 59 7180737 7180758 GCTGGCTCATACACTTTATCTC 59 Novel Rattus norvegicus 81 AABR07000325.1 ENSRNOG00000059032 ENSRNOT00000085963 1 1 1 83 1 9848530 9848962 CCTGAAAGGGTTTCATTTAGCA 59 9849006 9849024 ATGAAGCACTGAACCAGCT 60 Novel Rattus norvegicus 81 AABR07000382.1 ENSRNOG00000060990 ENSRNOT00000081586 3 1 1 81 1 11770914 11770935 AATTAGACGCAATAAGGAGACC 58 11770974 11772158 CTCAAGGACATCCTTTAATTGC 58 Novel Rattus norvegicus 81 AABR07047054.1 ENSRNOG00000054679 ENSRNOT00000081873 3 1 1 83 5 17560719 17577721 CCCATATGGAAGGAGCCAG 60 17560654 17560673 TGATACAGACCTGCTTCCAC 60 Novel Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000080219 3 1 2 81 4 86699588 86833035 CTTCACCATCGGATCTAAGTC 58 86699527 86699546 TGGCTTCTCCTTAACATTCC 58 Novel Rattus norvegicus 81 AABR07060676.1 ENSRNOG00000060884 ENSRNOT00000084146 3 1 1 118 4 89003035 89003059 CTCTGAGACACATTCATATTTCCAG 60 89003134 89003949 CTGTTCTCTGTCCTTAGGCA 59 Novel Rattus norvegicus 81 AABR07047174.1 ENSRNOG00000057401 ENSRNOT00000085989 2 1 1 86 5 22255632 22256016 AACATTTGTCACTCTGTGCC 59 22255565 22255585 GGCTGCTGTAGTTATGAACAC 59 Novel Rattus norvegicus 81 AABR07060920.1 ENSRNOG00000054587 ENSRNOT00000090082 3 1 1 83 4 100861392 100862289 GCTAACACTATGCACTGCC 59 100861327 100861346 CATTTGATGGAATGCTGGGT 59 Novel Rattus norvegicus 81 AC096263.1 ENSRNOG00000055694 ENSRNOT00000085732 1 1 1 80 10 71852051 71852070 TCTCCACTTCCAACTGTTCC 60 71852112 71858974 CCAATGCCATCTCAGATTCC 59 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 3 1 1 60 5 38572345 38572365 ATCAACATTGAAGTGTGCTCC 59 38567863 38572326 AATGACTTCCAGTAGTTCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015784.1 ENSRNOG00000055215 ENSRNOT00000081644 3 1 1 101 14 76273080 76274053 ACAGAATACTGCAGGATCCTG 60 76274116 76274134 TGCTGTCTCTGTCGATGTG 60 Novel Rattus norvegicus 81 AABR07061237.1 ENSRNOG00000055832 ENSRNOT00000088100 1 1 1 80 4 111238465 111238485 GAAATGGGAACGAGATACCTG 59 111238521 111242919 GGAATATGTTTCATAGTAGCCACTC 60 Novel Rattus norvegicus 81 AABR07047823.1 ENSRNOG00000058407 ENSRNOT00000080092 2 1 1 80 5 49387708 49387729 AGTTACTCGAGAAGTTGACCAG 60 49387769 49389520 AGTATGTGCCATACCTGGTG 60 Novel Rattus norvegicus 81 AABR07030257.1 ENSRNOG00000052162 ENSRNOT00000077728 2 1 1 86 10 78220602 78223572 GGACTACTCTGCTGGATGG 59 78223621 78223640 ATCACAGGGCTACAGAAGTC 59 Novel Rattus norvegicus 81 AC110488.1 ENSRNOG00000011990 ENSRNOT00000015955 2 1 1 63 5 57738134 57738153 GGGAAAGAAGAAAGGAAGGG 58 57730228 57730247 TCTATGACATTGATGTGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000533.1 ENSRNOG00000052464 ENSRNOT00000084087 3 1 1 80 1 16965440 16965459 CAGCAACCCTTCTAATGTGG 59 16961072 16965398 AATACCAGGACCTGTCACTG 59 Novel Rattus norvegicus 81 AABR07015966.1 ENSRNOG00000055092 ENSRNOT00000086499 2 1 1 80 14 88184247 88184270 GTTCTAATTCCACACTTACTCTGC 60 88184307 88185540 AGTTTCTGAGATCCCTTCTGC 60 Novel Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 2 3 3 80 1 19639621 19639640 TGAGTGAAGTCCCAGATGAC 59 19639396 19639582 CTACTGGAGTGTACCTCATAGAG 59 Novel Rattus norvegicus 81 AABR07016310.2 ENSRNOG00000053463 ENSRNOT00000077759 1 1 1 60 14 96538000 96538021 CTCCTCAGAGAAACAAGAAACC 59 96534412 96534432 GTCAGGAAGAATTTCTGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048379.1 ENSRNOG00000058548 ENSRNOT00000089154 2 1 1 146 5 75678007 75678025 GTCCCACAACCCTAAATGC 59 75677436 75677897 CATCACAGAACCTGCTCCA 60 Novel Rattus norvegicus 81 AC127189.1 ENSRNOG00000053913 ENSRNOT00000083359 2 1 1 87 1 21704520 21704616 AGGATTAATGGGATCCGCG 60 21704451 21704469 GGAAACAACTGCCACAGTG 60 Novel Rattus norvegicus 81 AABR07016578.2 ENSRNOG00000056722 ENSRNOT00000079867 1 1 1 80 14 105084283 105084809 AGAACTCTGCTCTGAAGACC 59 105084851 105084870 GTCGTGAGATTCCAACATCC 59 Novel Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000079852 3 1 2 92 10 93205816 93206379 TGACGACTCTGGATGAAGC 60 93206429 93206453 CTGTGAATTCTTTCTCAGTGATCTC 60 Novel Rattus norvegicus 81 AABR07016586.1 ENSRNOG00000053517 ENSRNOT00000091607 2 1 1 91 14 105353497 105353515 CTGGAAGAGTCCTGATCGG 59 105353570 105358449 GCTTCTGCTCTCCATTCCT 60 Novel Rattus norvegicus 81 AABR07016672.1 ENSRNOG00000053953 ENSRNOT00000079374 1 1 1 80 14 110126473 110163489 CATTCTTATGCCAGGTGATGC 60 110163531 110163549 GAATGCATGCCTGTTACGG 60 Novel Rattus norvegicus 81 AABR07016721.1 ENSRNOG00000057717 ENSRNOT00000084993 1 1 1 94 14 112467128 112467146 TTTCCTAGATGTCGGAGCT 58 112423078 112467071 TGAACTTGGACTTACTCGTG 58 Novel Rattus norvegicus 81 AABR07016722.1 ENSRNOG00000056561 ENSRNOT00000081421 2 1 1 81 14 112624943 112626109 ACAACCAAGCCTTATCATCTG 58 112626151 112626170 TGTGAATATGCTGAGCTCTC 58 Novel Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 1 1 1 60 5 111966001 111966022 TTTACGAAGTACTGAGGATGGT 59 111966043 111978207 TCACAAGTTGTCTCAGCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030706.1 ENSRNOG00000058127 ENSRNOT00000088591 1 1 1 80 10 100878424 100878444 TTGGAAAGAGATTCGATGAGG 58 100874036 100878383 GGATCAATGCTTTCTGGGAG 59 Novel Rattus norvegicus 81 AABR07017103.1 ENSRNOG00000054415 ENSRNOT00000091892 1 1 1 80 15 10966685 10966704 CATTTGATCGAGGAGTGAGC 59 10966747 10969486 CCTGGTACCCAGTCATTGG 60 Novel Rattus norvegicus 81 AC118434.1 ENSRNOG00000053474 ENSRNOT00000090444 2 1 1 60 10 102746145 102746163 GCTCTTAACCATGAAGCCA 58 102746185 102746311 AGCTGGTATTCAGTTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001019.1 ENSRNOG00000054169 ENSRNOT00000090610 3 1 1 81 1 34013295 34013315 TCAAGGTACCAAGAATTGAGG 58 34011888 34013252 ATGCAGATGAAAGACCCTC 57 Novel Rattus norvegicus 81 AABR07049474.1 ENSRNOG00000051764 ENSRNOT00000085186 1 1 1 103 5 122828865 122829142 TAAGAGAAGTGCTGCAGCT 59 122829209 122829227 TCAAGTGCACTGTTCAGGT 60 Novel Rattus norvegicus 81 AABR07049514.1 ENSRNOG00000058427 ENSRNOT00000087262 1 1 1 68 5 125221831 125221850 ACCATACTTGGATGCTTCCT 59 125222746 125222767 GAAGTTGGTTAGAAGTTGAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030894.1 ENSRNOG00000054934 ENSRNOT00000088954 1 1 1 80 10 108053099 108053117 GACAAGGCAGAAACGAGAG 59 108051936 108053055 CAACAAGGAGGTTTGCCAG 59 Novel Rattus norvegicus 81 AABR07017266.1 ENSRNOG00000051924 ENSRNOT00000080450 1 1 1 80 15 20232176 20232197 GAGAAACGTTTCACAAGACCTC 60 20232238 20232986 AGGTAAGGCCGCAATACTC 60 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 2 3 3 82 20 56198644 56198663 AGCGCTCATTTACATATGCA 58 56198708 56199215 TTGCAGGTTCTGATTTGCA 58 Novel Rattus norvegicus 81 AABR07001392.1 ENSRNOG00000054156 ENSRNOT00000080624 2 1 2 82 1 42230079 42230097 GCTAGTCCACCTTGAGAGC 60 42230137 42232798 CTTTCTGAGTCTTTAGCTTTCTCTG 60 Novel Rattus norvegicus 81 AABR07001416.3 ENSRNOG00000060413 ENSRNOT00000086422 1 1 1 87 1 42981336 42981354 ACAACATCCGTGGACAGAG 60 42980962 42981289 TCCTCATACTTGCTCTTGTAGTC 60 Novel Rattus norvegicus 81 AABR07001455.1 ENSRNOG00000053507 ENSRNOT00000088141 3 1 1 80 1 45621408 45622035 AGAACAAGGACTCATGATTTCG 59 45622073 45622094 AATTCGATGCAGGATGAAAGAG 59 Novel Rattus norvegicus 81 AABR07049695.4 ENSRNOG00000057688 ENSRNOT00000077204 2 1 1 91 5 133799381 133801957 GGGAAGCACAGTACTGAGG 60 133802010 133802030 GTATTCATCTGGAACTGCAGG 59 Novel Rattus norvegicus 81 AABR07017768.5 ENSRNOG00000059044 ENSRNOT00000085722 3 1 1 83 15 30790055 30790297 CTTTGTCTGGATTTAATGTGGC 58 30790340 30790359 CATATGAACAGTCCAGGGTG 58 Novel Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 3 1 1 61 15 30870087 30870105 CACAGAAGCCTGGAAACTC 59 30868134 30870063 CTCTTGAGGACACTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001497.2 ENSRNOG00000058069 ENSRNOT00000089344 1 1 1 66 1 47704730 47704748 GTGTGAAGTGAAGAGACCC 58 47725725 47725743 AAGGTGTCTGCTCTTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049799.1 ENSRNOG00000054301 ENSRNOT00000083974 3 1 1 84 5 138678470 138678488 GAGTGCAGTCCCATTTCAG 59 138678536 138684798 TTGTGATCTGACACCAGGT 59 Novel Rattus norvegicus 81 AABR07001592.1 ENSRNOG00000054756 ENSRNOT00000089416 2 1 1 60 1 53983049 53983691 AGAACAACAGGTTAAGCTCTC 58 53983710 53983731 TATATTCACATTAGCCTCCAGG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07001592.1 ENSRNOG00000054756 ENSRNOT00000089416 3 1 1 60 1 53983048 53983691 TAGAACAACAGGTTAAGCTCTC 58 53983709 53983730 ATATTCACATTAGCCTCCAGGG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07049886.2 ENSRNOG00000052899 ENSRNOT00000079457 3 1 1 125 5 142511360 142511545 CCCGGTTTATTAGAAACAACTC 58 142511256 142511274 TATGACCAATTCCACGGTG 58 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000085288 2 1 2 80 5 143189505 143194661 GAAATGTCCCAGGAATCCAC 59 143194704 143194722 ATTCCAGAAGTGAAGGGCT 59 Novel Rattus norvegicus 81 AABR07017912.1 ENSRNOG00000052103 ENSRNOT00000091148 2 1 1 96 15 33942785 33944351 CATGCACATGCAGGTAAGG 59 33942707 33942725 AATAGATGGTCTCCGGCAG 59 Novel Rattus norvegicus 81 AABR07001623.1 ENSRNOG00000061719 ENSRNOT00000089974 2 1 1 62 1 54325037 54325055 AGTGCTACAAACCAGGTCC 60 54325343 54325361 GAGGGTGACAGATCTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018050.1 ENSRNOG00000054986 ENSRNOT00000085916 2 1 1 80 15 37343446 37345737 AGATTCAGACCATGCAAATCG 59 37343386 37343405 TGTAGTCACAGTGGATCCTC 59 Novel Rattus norvegicus 81 AABR07031983.1 ENSRNOG00000051817 ENSRNOT00000091409 2 1 1 80 18 41919188 41919920 GCTGTTTGTGAGGTATGCT 58 41919126 41919146 TCTAGGAAGCTACAGATGGTG 59 Novel Rattus norvegicus 81 AABR07031983.1 ENSRNOG00000051817 ENSRNOT00000091409 3 1 1 81 18 41919189 41919921 TGCTGTTTGTGAGGTATGC 59 41919126 41919146 TCTAGGAAGCTACAGATGGTG 59 Novel Rattus norvegicus 81 AABR07001662.1 ENSRNOG00000054056 ENSRNOT00000092209 2 1 1 81 1 54882841 54883328 CTTTCTCAGGAAAGGGCAG 58 54882778 54882796 AGAGGATGCCTTGATTTGC 58 Novel Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 3 1 1 60 6 32359989 32415000 CTTATAAGCTACATAGTGCCAGGA 60 32359952 32359971 TAAGCAAAGGCAGGAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072591.1 ENSRNOG00000056586 ENSRNOT00000090562 3 1 1 85 18 47339782 47350541 CAAGAAAGGTGGCTGTGTC 59 47339715 47339735 CCAGGAAGATGTAGTTGTCCA 60 Novel Rattus norvegicus 81 AABR07032135.1 ENSRNOG00000054920 ENSRNOT00000090933 3 1 1 80 18 48828259 48853177 GACGGAAAGTTAAAGGCTCTC 59 48853217 48853237 TGTTCTCAACAAGGTATGCCT 60 Novel Rattus norvegicus 81 AABR07063515.1 ENSRNOG00000051747 ENSRNOT00000083712 1 1 1 80 6 32959378 32959398 AAGATTTCATCTCAAGGCAGG 58 32959000 32959336 AGACCTGTCAGGAATCTGC 59 Novel Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 2 1 1 77 18 49224722 49224740 TTTGTTGTGTCAGGCACTG 59 49223972 49224682 TTTCTGGTGGGCTCATAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001929.1 ENSRNOG00000059824 ENSRNOT00000089634 2 1 1 60 1 62359995 62360017 GGTGAAGAAAGAGTAAAGACTCC 59 62333380 62333401 CTGTATCAGGAACAAACACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC107505.1 ENSRNOG00000056171 ENSRNOT00000080356 3 1 1 81 18 53458545 53458567 CAACCCAGGATTAAGCATTATCC 60 53458607 53518825 AAGAAACATGCTGTGTCAGG 59 Novel Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 3 1 1 76 15 50310012 50310030 AGAGACCAGACAAAGGCAG 59 50301627 50309972 CAACATAACAGGGAGGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063652.1 ENSRNOG00000053504 ENSRNOT00000087716 2 1 1 82 6 39879463 39879483 CATGGGTTTGTCTTCATTCAG 58 39863867 39863887 GAGATTGTGTAGTTCTGTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 1 1 1 60 15 52501664 52501683 GCTGTTGAGCCATGTAAAGG 60 52501706 52502272 CATCATAACTGCCTGGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050393.1 ENSRNOG00000051876 ENSRNOT00000087999 3 1 1 110 5 163715237 163715255 CTGAGTCCTCCAGGTACCT 60 163714081 163715165 TTCTGAGCATATGGAGACCTG 59 Novel Rattus norvegicus 81 AABR07032327.1 ENSRNOG00000052630 ENSRNOT00000080240 1 1 1 80 18 61176542 61180390 GGGAACACAGTGGATACCA 59 61176480 61176504 CTCTTCTTCAAGTTAAGACAGTTCC 60 Novel Rattus norvegicus 81 AABR07063755.1 ENSRNOG00000054811 ENSRNOT00000080008 2 1 1 80 6 46622300 46622319 GTCATGAAGAAAGGCAAAGG 57 46621699 46622259 GGAGAAATTTCTGGAACTGTG 57 Novel Rattus norvegicus 81 AC135265.2 ENSRNOG00000058112 ENSRNOT00000079142 3 1 1 60 18 70787515 70787534 CTCAGCTGCTCCTATAGAGG 59 70787021 70787039 TAAGAGATGCAGGGACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063852.1 ENSRNOG00000052265 ENSRNOT00000082698 1 1 1 95 6 52713261 52713284 GAGAAGCTGTATATGTACATCAGG 59 52712886 52712905 CTTTACTGTTGAGCCCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 3 1 1 60 18 71990621 72001708 GATCCATTCTCTACCTCGGG 59 72001730 72001749 TTCTGCTTGCAATTCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064048.2 ENSRNOG00000052527 ENSRNOT00000090917 2 1 1 80 6 62294094 62309900 GAGACTTGTATGTTGCAAAGG 58 62309941 62309960 TGCCCAAATTTCATTTCCTC 57 Novel Rattus norvegicus 81 AC114093.1 ENSRNOG00000053481 ENSRNOT00000078523 2 1 1 80 18 74761362 74778819 AGCTTAGCAGTGAGACCAG 59 74778863 74778881 CCAATAAACTCGCCAGTCC 59 Novel Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 2 2 2 80 1 88265243 88266843 TAAGGAAAGCAAAGGCTGG 58 88266882 88266905 GATGACTCTTCTTCATAGAGTTCC 59 Novel Rattus norvegicus 81 AABR07032642.1 ENSRNOG00000057908 ENSRNOT00000091137 1 1 1 61 18 75847171 75847189 TAACATCGTGGTCCTGCTC 60 75847214 75848287 CCGTGATTCCCAGAAACTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07051370.1 ENSRNOG00000052882 ENSRNOT00000080029 2 1 1 60 3 6809815 6809836 GCTCTGATTTATAAAGTCAGCG 58 6809144 6809162 CATGCCCTAGGTACATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002923.1 ENSRNOG00000055794 ENSRNOT00000087815 1 1 1 60 1 89628029 89628047 ACTTCCCTGAGTCTTGCAG 59 89629746 89629764 TGTTGCACATGAACGATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002923.1 ENSRNOG00000055794 ENSRNOT00000087815 3 1 1 64 1 89628029 89628047 ACTTCCCTGAGTCTTGCAG 59 89629750 89629768 TTGGTGTTGCACATGAACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019254.2 ENSRNOG00000060194 ENSRNOT00000079870 3 1 1 81 15 96817452 96817471 ACCGAAATAAAGGCAGAGTC 58 96790507 96817409 TGGAGGGATCTATAGAGGTG 57 Novel Rattus norvegicus 81 AABR07019269.1 ENSRNOG00000052351 ENSRNOT00000084885 1 1 1 80 15 97396894 97420533 AGACAGCATAGCAAAGCAG 58 97396832 97396852 ACTATAGCTCTCCTTAGTGGG 58 Novel Rattus norvegicus 81 AABR07019269.1 ENSRNOG00000052351 ENSRNOT00000084885 3 1 1 80 15 97396896 97420536 TGAAGACAGCATAGCAAAGC 59 97396835 97396853 ATAGCTCTCCTTAGTGGGC 58 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000085953 2 1 2 82 1 89675287 89675306 AATGGGAAGATCTGGACCTG 59 89675350 89682474 CTTCGTCACTCAGTGAAAGC 59 Novel Rattus norvegicus 81 AABR07051431.1 ENSRNOG00000060585 ENSRNOT00000089483 3 1 1 98 3 10966086 10966104 CAATGGAGTAGGCTCCTCC 59 10966166 10967072 TCTGTCTCCACAGCATCAC 59 Novel Rattus norvegicus 81 AABR07032758.2 ENSRNOG00000057736 ENSRNOT00000088438 3 1 1 81 18 80209713 80209733 TCTATATCTGCCCAGAACAGC 60 80209775 80212456 CTTTACAGCAGGATCCTGGA 59 Novel Rattus norvegicus 81 AABR07064578.1 ENSRNOG00000054231 ENSRNOT00000090793 3 1 1 80 6 85561527 85561547 ATCACTGAGCTGTATTACCAC 58 85552777 85561488 TTATCATTGACTGAGTGTGAGC 59 Novel Rattus norvegicus 81 AABR07003007.1 ENSRNOG00000060688 ENSRNOT00000084795 2 1 1 64 1 92926571 92926589 ATCTTGATCCCTGACAGCA 58 92926617 92927807 TTTCTGCTGTGGAAACTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07033274.1 ENSRNOG00000059180 ENSRNOT00000080572 1 1 1 81 11 14773329 14773347 CAGCTGGTGAAACTTGGAG 59 14772796 14773284 AAGGAAGACAAGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07071904.1 ENSRNOG00000052237 ENSRNOT00000077787 3 1 1 102 1 94836378 94836397 CAGAATGCAAATGACCAGGA 59 94836460 94837410 CCTTCAGGTCTGCTTTAACAC 59 Novel Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 2 1 1 69 1 97084719 97089830 TAAGGGATCACAAGACTGGG 59 97084669 97084687 AAGTTTCGAGCCTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 1 2 3 80 11 27569639 27574164 GGAAGGAGAACTACAAGCTC 58 27574206 27574225 CCAGGGCTTAGAAGTTTGAC 59 Novel Rattus norvegicus 81 AABR07065050.1 ENSRNOG00000055943 ENSRNOT00000081771 2 1 1 96 6 106285379 106285398 CAAACCAAAGGACTGGTTCC 59 106285457 106285652 CATCCTGGAGGAGATCAGG 59 Novel Rattus norvegicus 81 AC120807.1 ENSRNOG00000053946 ENSRNOT00000082025 3 1 1 136 1 102087255 102087273 AGGAAATGTGGAAGACGGA 59 102087373 102088599 TCCAATTCCAGTCCACCTG 59 Novel Rattus norvegicus 81 AABR07073245.1 ENSRNOG00000053035 ENSRNOT00000077192 2 1 1 81 6 108930422 108930444 CCTGAGAAATAGGAAGCAAACTG 60 108930485 108931457 CTTCTTCCTCCAGTGGAGG 59 Novel Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 2 1 1 67 3 30248583 30248601 ATTTCAGAGGCATCCAGGA 58 30247212 30248555 TCATTTGATATGGTTCCTGGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 3 1 1 68 3 30248584 30248602 AATTTCAGAGGCATCCAGG 58 30247212 30248554 TCATTTGATATGGTTCCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051982.2 ENSRNOG00000060164 ENSRNOT00000078770 3 1 1 143 3 30894415 30894436 ACTCCCAATCTTAGAAGAGGTG 59 30892834 30892852 CCAACCTGGAAGGACTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.1 ENSRNOG00000055422 ENSRNOT00000083960 2 1 1 80 6 110891040 110891975 AGTGCACTGATCCCATATGG 60 110892017 110892036 AGTACCATCCATCCCTTGTG 59 Novel Rattus norvegicus 81 AABR07033688.1 ENSRNOG00000061175 ENSRNOT00000091641 2 1 1 80 11 35327108 35327129 CAAGTCCATCATCTTCCATCTC 59 35326019 35327070 TCATTTCCATCCTTTCAATGGG 59 Novel Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 1 1 1 68 11 35609379 35609397 AGGAAAGGAACAAGTGGAG 57 35609426 35611103 GTTTGCTCTTCCTACATTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065276.1 ENSRNOG00000056267 ENSRNOT00000080057 3 1 1 109 6 118718450 118732430 TTTGAAAGGGCCACTAAGAG 58 118737363 118737381 AGCTGAGGCAGAATTAAGC 58 Novel Rattus norvegicus 81 AABR07003392.1 ENSRNOG00000061672 ENSRNOT00000084001 3 1 1 60 1 108641550 108641571 AACCCACCAAATTCACTTTGAG 60 108617886 108617906 GCAGGATACTCTTGTGATCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052387.1 ENSRNOG00000061109 ENSRNOT00000088407 3 1 1 81 3 50512938 50512957 AAGGAATGCAAAGCACATCG 60 50507863 50512898 GTCTTCTACCTCTAAGTAGCCAG 60 Novel Rattus norvegicus 81 AC113858.2 ENSRNOG00000056496 ENSRNOT00000086817 3 1 1 81 13 68878644 68883017 GGGCTTAGTGTCAGAGGAC 60 68883062 68883080 CTTCTATGGCATGGTGGGA 59 Novel Rattus norvegicus 81 AABR07065348.2 ENSRNOG00000055490 ENSRNOT00000083586 1 1 1 80 6 123092122 123092476 ATACGCAAAGAACAGAAGGG 58 123092518 123092537 GAGACAACAAGACCTTCCAG 58 Novel Rattus norvegicus 81 AABR07065349.1 ENSRNOG00000054787 ENSRNOT00000083679 2 1 1 83 6 123153248 123153611 GGTTGAAATGTGTTTCCTCC 57 123153184 123153203 GATTCGTTCTGAGGTGAGTC 58 Novel Rattus norvegicus 81 AABR07021590.1 ENSRNOG00000051371 ENSRNOT00000081991 2 1 1 80 13 79712056 79712077 GCAAAGTACTCAGAGGAAACAG 59 79710100 79712018 AATCTTTCTCTTTGCTCAGAGG 59 Novel Rattus norvegicus 81 AABR07052549.1 ENSRNOG00000055699 ENSRNOT00000091918 3 1 1 111 3 60911853 60911871 GGAGGAAGAGTCAGTTGGA 58 60911189 60911778 GGAGAGGCATCTGTTTGTG 59 Novel Rattus norvegicus 81 AABR07052550.3 ENSRNOG00000059983 ENSRNOT00000089479 1 1 1 80 3 61120772 61120791 CCTGAAAGAAGGCATACAGG 58 61119558 61120730 CAGTGCCTTGTAATGGACTC 59 Novel Rattus norvegicus 81 AABR07034502.2 ENSRNOG00000060165 ENSRNOT00000083501 1 1 1 80 11 74257969 74257989 CAAATTAAGCTTCGCACACTC 59 74257237 74257928 ACTGTTTGTGAAGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07052589.1 ENSRNOG00000054867 ENSRNOT00000081267 1 1 1 92 3 64853424 64853442 AGAAAGCACAACTCCTCCA 59 64853498 64856312 GTTGTTGGGCTTTCTGGTG 60 Novel Rattus norvegicus 81 AABR07065429.2 ENSRNOG00000060399 ENSRNOT00000086417 2 1 1 80 6 128349578 128358867 TGGGATGAACAGAAGTGTCTC 60 128349518 128349536 TTCTCCAAAGTGGGATGCT 59 Novel Rattus norvegicus 81 AABR07065429.2 ENSRNOG00000060399 ENSRNOT00000086417 3 1 1 81 6 128349580 128358867 TGGGATGAACAGAAGTGTC 57 128349517 128349535 TTTCTCCAAAGTGGGATGC 58 Novel Rattus norvegicus 81 AABR07021734.1 ENSRNOG00000056636 ENSRNOT00000077414 2 1 1 96 13 88601400 88602441 AAACAAGCATCAAGGTGGC 59 88601322 88601341 CAAGCAATTCATCGTCCCAG 60 Novel Rattus norvegicus 81 AABR07052639.1 ENSRNOG00000057160 ENSRNOT00000090066 3 1 1 88 3 67414428 67414449 AACAACCTGATGTGACTTTGAG 59 67414498 67414757 TTCCGTTGTGTCCTCTTCC 60 Novel Rattus norvegicus 81 AABR07021823.2 ENSRNOG00000060190 ENSRNOT00000079818 2 1 1 150 13 93936987 93937005 TGGACCTTTCAATTTGCGC 60 93936184 93936873 TCAGAGGAGTCTTGCAAGG 59 Novel Rattus norvegicus 81 AABR07004136.1 ENSRNOG00000061645 ENSRNOT00000082877 3 1 1 81 1 126694891 126694909 TGTCCACCTTGGATCTTCG 59 126692045 126694846 CAGATTCAACCTGCTTGCC 60 Novel Rattus norvegicus 81 AABR07034718.1 ENSRNOG00000057994 ENSRNOT00000087203 3 1 1 61 11 85053718 85053737 GTTTATTGGGTTCTTGTGGC 58 85053872 85053890 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021910.1 ENSRNOG00000058321 ENSRNOT00000086734 3 1 1 80 13 97626801 97626820 GGGCATTACTTAAAGCTGGT 58 97624067 97626760 TCCTTAAGGACTCCAAATGTG 58 Novel Rattus norvegicus 81 AABR07004232.2 ENSRNOG00000054097 ENSRNOT00000085407 3 1 1 81 1 131688254 131688273 GCCAGTTCTCATCATCTGAG 58 131688317 131688663 GTACAACAGCCCTCAACTG 59 Novel Rattus norvegicus 81 AABR07004241.2 ENSRNOG00000055864 ENSRNOT00000077906 2 1 1 80 1 132497867 132503424 CATGATTCTCTTAGACTCCACGA 60 132503462 132503482 TGCAGGGAAAGATAGTCACAG 60 Novel Rattus norvegicus 81 AABR07035083.1 ENSRNOG00000059996 ENSRNOT00000079086 2 1 1 64 12 4170957 4170981 GCATATCTATACTGAAGTGACAGAG 59 4177600 4177618 GAACAAGGCCATGTCTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 3 1 1 95 1 134951534 134951725 GTTTCCAATCTGGAGAAAGGG 59 134951459 134951477 AAACAAGTGCCTGGAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 3 1 1 67 6 142405224 142405347 CAAGGTTTGCACTGTGAGG 59 142405175 142405193 AATGACCCTTTAGGCTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065883.1 ENSRNOG00000052278 ENSRNOT00000081721 1 1 1 80 6 143599303 143605628 TAACTGATGGTGTCTACTCCC 59 143599243 143599262 GAAGTTTCACTGAAGACCCA 58 Novel Rattus norvegicus 81 AABR07004364.1 ENSRNOG00000060303 ENSRNOT00000086092 1 1 1 82 1 139199157 139199175 TGGGCTGTAACTCAGACAC 59 139197601 139199113 ACTCTTTCTAGGCACTGTCTC 59 Novel Rattus norvegicus 81 AABR07053198.1 ENSRNOG00000054398 ENSRNOT00000087858 2 1 1 61 3 96097655 96097674 TTCACCTCTTTGTGCTTCTG 59 96129253 96129271 ATCCTTAGGGCCATCTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053450.1 ENSRNOG00000056480 ENSRNOT00000086990 3 1 1 83 3 107406275 107406293 GAGCTAATAGCTCTCGAGC 57 107403112 107406231 CATGTGGAATCATTATCTCAGC 57 Novel Rattus norvegicus 81 AABR07066436.1 ENSRNOG00000060948 ENSRNOT00000092074 3 1 1 82 9 8864580 8864599 CTATGTGGAGGCAAAGAGGT 60 8857668 8864536 ATTCAACATCCAGCTGTTGC 60 Novel Rattus norvegicus 81 AABR07053479.1 ENSRNOG00000058690 ENSRNOT00000082123 1 1 1 80 3 109331595 109331616 TCCTTTCCCTCTTCTAATTGGT 59 109331654 109335472 TGGACACGTTCATAGATCAGAG 60 Novel Rattus norvegicus 81 AABR07035650.1 ENSRNOG00000061750 ENSRNOT00000087357 2 1 1 94 12 20785585 20832372 AGAAACAGGAAGGGATCACC 60 20785510 20785528 CCATGGTGAGAGGTCATGG 60 Novel Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 1 1 1 60 16 17138166 17139388 GGGTGGATAAGATTCATCAAGG 59 17138127 17138145 AGCTTGTGGTTACAGTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 1 1 1 64 1 153456499 153457372 GGTCCAAGACCTGGAAGAG 59 153457400 153457418 TATTTGGTAGATGGGCGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066828.1 ENSRNOG00000056706 ENSRNOT00000086341 1 1 1 80 9 18085974 18098670 CCCTAAAGGAGCATCAAGAC 58 18098712 18098731 TGTGAGCTCTCCAATAAAGC 58 Novel Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 1 1 1 75 16 19807083 19807215 AGGTCTTACAGAAACGGTG 57 19807026 19807044 AAGATACTGTGGAGGAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024869.2 ENSRNOG00000060135 ENSRNOT00000087628 3 1 1 115 16 20154208 20154510 GTACATGGCAAAGGTGAGAG 59 20154112 20154130 CATCTGAACACCAGCTTCG 59 Novel Rattus norvegicus 81 AABR07024870.1 ENSRNOG00000054077 ENSRNOT00000091624 2 1 1 80 16 20231659 20231677 CATTGTCTCTGCTGCTTCC 59 20231718 20232003 AACTCAAGATATCACCCATCAC 58 Novel Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 1 1 1 62 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20523786 20525041 CTCACATGTGAAGGATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 2 1 1 75 3 130601388 130601409 ACTAGGAATGTTTATCCATGGG 58 130594905 130601352 TATTCTTTGACAACGGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053850.1 ENSRNOG00000059311 ENSRNOT00000081306 1 1 1 95 3 130962638 130962657 CATTTCCTTGCTTCCTACGT 58 130962711 130964788 TATCATGATCCGGTAGATCTGTC 59 Novel Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 3 1 1 103 12 33221146 33221164 AAATGAACCCACTCAGCGA 60 33221231 33231279 ATCCTCAGCGACAGATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.3 ENSRNOG00000061665 ENSRNOT00000086476 2 1 1 119 12 33693467 33693487 GACAAAGAGACTGAGACAGAG 58 33693567 33694569 TATGAGCACCATAGGTCCTG 59 Novel Rattus norvegicus 81 AABR07067462.2 ENSRNOG00000054376 ENSRNOT00000081258 2 1 1 66 9 47335588 47335609 AAGGTGTCATCAGACATTACTC 58 47366031 47366049 CATGAGCAAGACAATGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067469.1 ENSRNOG00000052973 ENSRNOT00000089604 2 1 1 83 9 47937264 47938285 GAGCTCAAGCAATGATCCA 58 47937199 47937217 CTTGTCGTCTTTGCTTCTG 57 Novel Rattus norvegicus 81 AABR07026002.3 ENSRNOG00000056149 ENSRNOT00000088102 2 1 1 85 16 58707728 58709423 AGAACCTTCAAATCTGAGTGTC 58 58707664 58707682 CTAGTCCTCCATGGCAGAC 59 Novel Rattus norvegicus 81 AABR07005837.1 ENSRNOG00000054067 ENSRNOT00000080548 3 1 1 111 1 202705052 202707120 CAGTAACCACAGGAGACCTG 60 202704960 202704980 GGTGAGGATGAGTAAGGAGAG 59 Novel Rattus norvegicus 81 AABR07026144.1 ENSRNOG00000052907 ENSRNOT00000079928 3 1 1 80 16 65430058 65521971 AAGATCCTTTCAAGCCCAG 57 65522013 65522033 ATACAGAAGACTGTCCAACTG 58 Novel Rattus norvegicus 81 AABR07036442.1 ENSRNOG00000051935 ENSRNOT00000088427 3 1 1 77 12 43321013 43321032 AACTCCTGGGATTGATGAGG 59 43321072 43323426 TTGAGTGTCACAGGGACTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07067791.1 ENSRNOG00000055231 ENSRNOT00000082250 1 1 1 85 9 64218409 64222774 TTGTACTGGAGTACATTGTACG 58 64218345 64218363 CAGGAGACTGACGACTACC 59 Novel Rattus norvegicus 81 AABR07054597.1 ENSRNOG00000056015 ENSRNOT00000080316 1 1 1 83 3 163006940 163008517 AATCAACTGGAGCCAAGAG 57 163008564 163008582 AAGCAGAAGGAGTTGTCAC 58 Novel Rattus norvegicus 81 AABR07054619.1 ENSRNOG00000060501 ENSRNOT00000078209 1 1 1 80 3 164625948 164625967 TGGCCTAGGGTTTGATAGAC 59 164626009 164626664 TTCATTTCCCTGTCATCTGC 58 Novel Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 3 1 1 75 12 49031218 49034030 AGGACCTCATTGCACAGTC 60 49034068 49034087 TTCTTGGCTTCTTCCAACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026339.1 ENSRNOG00000061696 ENSRNOT00000086537 2 1 1 94 16 72698798 72698954 GTTCGGATGCTGTTACTGC 59 72699012 72699030 TACTAGCTGAGGCACTTGC 60 Novel Rattus norvegicus 81 AABR07054752.1 ENSRNOG00000054244 ENSRNOT00000080321 2 1 1 80 3 168603866 168603884 TTGAAGCCTTCAGAGTGCT 59 168603928 168604055 ACTGGAACTGCCTTGATCC 60 Novel Rattus norvegicus 81 AABR07068043.1 ENSRNOG00000051933 ENSRNOT00000080398 1 1 1 84 9 79295180 79295342 CTCATCTGAATCAGCTGGAC 58 79295115 79295133 TGTTTGCATTCTTCAGCCC 59 Novel Rattus norvegicus 81 AABR07022108.1 ENSRNOG00000052739 ENSRNOT00000088993 1 1 1 80 13 108273604 108274870 TCTTTCTCAGGATGTGTCCC 59 108273543 108273563 CCCTGATCTATAATGTCCCGA 59 Novel Rattus norvegicus 81 AABR07006197.1 ENSRNOG00000053356 ENSRNOT00000077519 2 1 1 80 1 224139614 224160930 AAAGCAAATGGGAACAATGG 58 224139553 224139573 ATCTCCTCTGAACTAAGATGC 57 Novel Rattus norvegicus 81 AABR07054837.1 ENSRNOG00000058726 ENSRNOT00000078943 1 1 1 144 3 171242108 171243419 ATGCTGACCATGATCAGGG 60 171243649 171243667 TAGCAAGTACCTGGGTGTG 59 Novel Rattus norvegicus 81 AABR07054948.1 ENSRNOG00000060715 ENSRNOT00000089263 1 1 1 82 3 174553424 174553442 ATCGGGATGTGGAAGAAGC 60 174553486 174554933 ATTGTTGTCATTCTCATGCCC 59 Novel Rattus norvegicus 81 AABR07068198.3 ENSRNOG00000056997 ENSRNOT00000088218 1 1 1 60 9 89722444 89722464 CACAGTTGACTTTAATGTCGG 58 89719310 89719328 AGGATGGAGGTAAGGAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 2 1 2 88 X 35973357 35975098 CTTCAGAAGTGCCATGGTC 59 35972578 35972597 GCGAACTTGATCTCACAAGG 59 Novel Rattus norvegicus 81 AABR07055191.1 ENSRNOG00000052514 ENSRNOT00000078281 1 1 1 80 7 450274 450612 GTCTGACAAGAGATGAAATTGC 58 453651 453669 TACTCCTTTCCATGGTCCT 57 Novel Rattus norvegicus 81 AABR07072528.3 ENSRNOG00000058489 ENSRNOT00000081861 3 1 1 90 16 82307784 82308709 CTGTGAAGACAGCTCAGGA 59 82307712 82307730 CAGAAGCCAGGAAACATGC 60 Novel Rattus norvegicus 81 AABR07068222.1 ENSRNOG00000055585 ENSRNOT00000080946 1 1 1 80 9 91414739 91414860 GTCCTAAGATTACAGAAAGAAGAGG 59 91414683 91414702 AAGAGCTTCACAACCATGTG 59 Novel Rattus norvegicus 81 AABR07026539.2 ENSRNOG00000060874 ENSRNOT00000077531 3 1 1 78 16 82430271 82430289 TTTACACTCCGCTCTCCAG 59 82430426 82430444 CATTAGCAGAGGCATGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC112440.1 ENSRNOG00000057332 ENSRNOT00000090483 1 1 1 80 9 93432181 93432200 GGAACCACTATGTTGGAGAC 58 93427900 93432138 CACAAGGACCTTTGAGGAG 58 Novel Rattus norvegicus 81 AABR07006654.2 ENSRNOG00000059909 ENSRNOT00000080454 2 1 1 90 1 244447163 244447808 TGCTACAAAGAAGACAACTGC 59 244448318 244448336 TTGTCTTCCCATGCAAGGA 59 Novel Rattus norvegicus 81 AC117971.1 ENSRNOG00000057391 ENSRNOT00000090247 2 1 1 84 7 19843488 19843508 GTGGGATTCTTCATCATTTGC 58 19843237 19843258 AGGTTACATTTCCAAGGTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC098022.2 ENSRNOG00000054594 ENSRNOT00000081706 3 1 1 80 7 20106087 20106105 CACCAACAATGTGTCAAGC 58 20104741 20106043 TCAAACGACCATGTTGACC 58 Novel Rattus norvegicus 81 AABR07006657.1 ENSRNOG00000053314 ENSRNOT00000081785 3 1 1 100 1 245097193 245099422 ATGATAGAGCTGACCTGGG 58 245097111 245097130 CTTGGTCCAGTCTTGAACTC 58 Novel Rattus norvegicus 81 AABR07056156.1 ENSRNOG00000061013 ENSRNOT00000081988 1 1 1 130 7 20629387 20629405 ATGAGTGTAGGAGAGCCCA 60 20629496 20713759 AGACTGATTCTTGATGTAGCCA 59 Novel Rattus norvegicus 81 AABR07026663.1 ENSRNOG00000053302 ENSRNOT00000080629 2 1 1 82 16 88573112 88583533 TTGAACATGCCGAGATGGT 60 88573048 88573067 TTTCAAGGCCTTCACTTTGG 59 Novel Rattus norvegicus 81 AABR07056200.1 ENSRNOG00000058241 ENSRNOT00000077916 3 1 1 114 7 21203520 21204244 CAACTTCACCAGATGGTGC 59 21203424 21203442 TGTCTTGCTGCTACTCAGG 59 Novel Rattus norvegicus 81 AABR07006713.1 ENSRNOG00000060655 ENSRNOT00000084859 1 1 1 65 1 248987701 248987719 TCTACCTCTCCACAAAGCA 58 249002634 249002652 TTTGTTGTGGTTGATGCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026921.1 ENSRNOG00000053032 ENSRNOT00000083367 3 1 1 87 17 4896677 4920868 TCTGACTAATGGAACTTCCCAG 60 4920916 4920934 TATTCCACTCCGATGGCTG 59 Novel Rattus norvegicus 81 AABR07026975.1 ENSRNOG00000057274 ENSRNOT00000081536 2 1 1 107 17 8106190 8106210 TGCATGTGGAATTATCACCAG 59 8106276 8118119 GGATCTGTCTTTACTAAACCGT 58 Novel Rattus norvegicus 81 AABR07068657.1 ENSRNOG00000058854 ENSRNOT00000084097 2 1 1 84 9 114215921 114218521 CTTCTGTATAATGGAGGGTCCA 59 114215858 114215876 GTCTTCTGGGCTTGAGAGG 60 Novel Rattus norvegicus 81 AABR07042652.1 ENSRNOG00000061211 ENSRNOT00000081065 2 1 1 88 19 1445504 1445522 CCCTCCTTCTTCACAAGGG 60 1436615 1445458 CTTGGATCTCTTCTAGAAATGTTCC 59 Novel Rattus norvegicus 81 AC139608.2 ENSRNOG00000054905 ENSRNOT00000082237 2 1 1 62 17 9422116 9427087 CATGTCTTCAGATGCGCAG 59 9422072 9422092 TTCAAGTCAGGAATAAGCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 1 1 1 80 1 257041634 257043999 GAAGTCATTCTGAGGCAGG 58 257041572 257041590 ATTCCTGCTTCTCAGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056515.1 ENSRNOG00000059844 ENSRNOT00000077957 1 1 1 82 7 27973712 27973730 AAACTGCTGAGTTCAGGGT 59 27973773 27973953 TGGCACAGTTGAATATCATCTC 59 Novel Rattus norvegicus 81 AABR07027022.2 ENSRNOG00000060239 ENSRNOT00000078774 2 1 1 90 17 11208838 11208856 ATTCTTCCCACTGTCTCCC 59 11208910 11211333 GTTCCCTCATCTAGGAGCC 59 Novel Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 2 1 1 70 19 3734259 3742489 GAATGAATGGCTTCAGAAGAC 57 3734209 3734229 ACATGCCAGTATTTAGAAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042699.1 ENSRNOG00000060999 ENSRNOT00000077644 2 1 1 105 19 4462814 4483643 CACTATGAGATGTTGCCTGC 59 4462728 4462746 ATTCATGAGCAGCTCTGCA 60 Novel Rattus norvegicus 81 AABR07069008.1 ENSRNOG00000052530 ENSRNOT00000082366 3 1 1 80 8 5187599 5187617 GATATCAACCTGCCCAAGC 59 5185681 5187557 TCCTTGATATGTCAACACCTG 58 Novel Rattus norvegicus 81 AC105485.1 ENSRNOG00000054628 ENSRNOT00000082293 2 1 1 81 1 264940478 264940500 TCTGTGTAGAAAGTTCTAGGAGG 59 264940540 264940696 GCAGAAGATGAAGCCATCTC 59 Novel Rattus norvegicus 81 AABR07072065.2 ENSRNOG00000057355 ENSRNOT00000084208 3 1 1 80 1 269080738 269081442 CTAACATCACAATCATTGGGC 58 269081484 269081502 CAAATCCGGTTGAAAGGGA 58 Novel Rattus norvegicus 81 AABR07043001.1 ENSRNOG00000058624 ENSRNOT00000088372 3 1 1 122 19 16166694 16166713 TATACTTGAGCACTGCAGCA 60 16158350 16166610 AGAGTTGTTTGCCATCACAC 59 Novel Rattus norvegicus 81 AABR07069227.1 ENSRNOG00000051989 ENSRNOT00000081222 2 1 1 82 8 13524575 13525542 CTATTTCAGTTCGTAACGGACC 59 13524514 13524532 TTTCGGAAGGTCTTTGCAC 59 Novel Rattus norvegicus 81 AABR07027321.1 ENSRNOG00000056758 ENSRNOT00000091716 2 1 1 82 17 24506740 24508089 GACTGAAGAGAAACTGGAAGAG 59 24506679 24506699 CCCGATTGTCCTTATATGCAG 59 Novel Rattus norvegicus 81 AABR07027478.3 ENSRNOG00000053076 ENSRNOT00000087967 1 1 1 80 17 33084323 33085398 CAAACACAAGTAAGAGCAGAG 57 33085439 33085458 AGGCTTCTTATTCTGACTGG 57 Novel Rattus norvegicus 81 AABR07027478.3 ENSRNOG00000053076 ENSRNOT00000087967 2 1 1 80 17 33084323 33085399 CAAACACAAGTAAGAGCAGAGG 60 33085438 33085458 AGGCTTCTTATTCTGACTGGG 60 Novel Rattus norvegicus 81 AABR07057379.1 ENSRNOG00000061135 ENSRNOT00000091151 1 1 1 80 7 68622776 68624056 CTGACATTCAGGGTCATCG 58 68624099 68624118 GGATGGAATGTAGGATCACC 58 Novel Rattus norvegicus 81 AABR07007055.1 ENSRNOG00000061365 ENSRNOT00000077804 1 1 1 104 1 278478816 278478834 AGTCTCTGTACAACTGCCG 60 278477564 278478748 CCAGGAGGTCATTTCCCTG 60 Novel Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 3 1 1 60 1 278516798 278516818 GAAGAGTGATATCCCAGTCTC 57 278515076 278516778 TATCAAGTATCTCCGAATGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC106702.1 ENSRNOG00000055842 ENSRNOT00000091855 1 1 1 60 19 32179514 32183464 ACACAACAGAGGAAGATCAG 57 32179473 32179491 TTGTCGTGATGGTCAAGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07069840.1 ENSRNOG00000058968 ENSRNOT00000090495 3 1 1 80 8 41156307 41156328 TGGAGATCACAATTCCTGAGAG 60 41155963 41156268 CTAGGGTGGAAGCATATCCTC 60 Novel Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 3 2 2 80 7 75853238 75853944 AAAGATTCTGACAGGAATGAGC 59 75853982 75854003 AACATACGGTTTCCACATTGAC 60 Novel Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 1 1 1 62 X 108894004 108894024 TGTGGAAAGCATTATGGAGAG 58 108894048 108894891 AACCACCTGCAAATTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007584.3 ENSRNOG00000055958 ENSRNOT00000077298 2 1 1 80 2 20317493 20317513 GATGAGCGTTCCTACAATGTG 60 20317553 20321794 TATTGATGATTCCCAGCCCTC 60 Novel Rattus norvegicus 81 AABR07029217.2 ENSRNOG00000051654 ENSRNOT00000086992 2 1 1 89 10 15772835 15772853 GCACTTCCTCAACAAAGGT 58 15772011 15772783 CCAAGTAGGAGGTTTAGTGC 58 Novel Rattus norvegicus 81 AABR07029467.1 ENSRNOG00000053532 ENSRNOT00000077842 2 1 1 82 10 29612704 29612722 GCTTGTCAGCAGCATACAC 60 29612768 29623853 GGATCTCTGACAGCTCCTG 59 Novel Rattus norvegicus 81 AABR07070161.6 ENSRNOG00000060387 ENSRNOT00000091503 2 1 1 112 8 55537981 55538190 AAACAACAAGAGGCTGCTG 59 55537887 55537905 AGGATCTCCAGTTGGTGAG 58 Novel Rattus norvegicus 81 AABR07007765.1 ENSRNOG00000060072 ENSRNOT00000092049 1 1 1 80 2 27571276 27571296 GTGATGAAACAGTGATTGAGG 57 27571337 27574480 GACTCAAGAACCTTCTCCAG 58 Novel Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000085401 2 1 2 91 2 28842892 28842910 TATGTCGACAGAAAGCTGC 58 28836884 28836905 AGCCAATTCTCTTGTAAGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.1 ENSRNOG00000053800 ENSRNOT00000083165 3 1 1 89 X 155804008 155804026 AAGACATTGCAGGTGTTGC 59 155800248 155803956 TGTGAGATAGCTAGTGGTCG 59 Novel Rattus norvegicus 81 AABR07007833.1 ENSRNOG00000051366 ENSRNOT00000077692 3 1 1 80 2 29795511 29796079 GACTCACTCAGGTACATATGCT 60 29795452 29795472 CATAGCTCTATTCCTGCTCCT 59 Novel Rattus norvegicus 81 AABR07027961.1 ENSRNOG00000058818 ENSRNOT00000085858 1 1 1 80 17 51105084 51105102 CTTTGTACTTGAGCCAGCC 59 51105145 51112695 AAGCCAGAGACCTACAAACC 60 Novel Rattus norvegicus 81 AABR07070345.1 ENSRNOG00000052283 ENSRNOT00000091522 3 1 1 124 8 66424500 66436758 CTATTTAAGGAGAATGTCTCGTGG 59 66424399 66424418 AATAGTGAGGCTCTAGGGCT 60 Novel Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 1 1 1 60 2 32310147 32310168 TTCTCATCACCAGACATAAGAC 58 32310189 32310404 TTCTTGGCTACAGATGGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044427.1 ENSRNOG00000059881 ENSRNOT00000085168 1 1 1 80 20 5790676 5790695 CTTGACTGTAATGGAGACGT 57 5790172 5790633 GCCAGTAGGACCTTTATCC 57 Novel Rattus norvegicus 81 AABR07007879.1 ENSRNOG00000058177 ENSRNOT00000081398 2 1 1 63 2 32633017 32636210 AAGTTCTGCTGGTAAGATCTG 58 32632974 32632994 ACACTCAGGATTCTACAACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 1 1 1 67 4 5628139 5628157 ACTCATGGCCATAATGCTG 58 5627199 5628110 AACTTAATCCTTCCTCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044559.1 ENSRNOG00000056023 ENSRNOT00000084010 1 1 1 82 20 10595763 10595781 CTCATTGATGGGCTGAGTG 58 10595825 10596547 CCTACGAGTCTGTTAATCTGC 58 Novel Rattus norvegicus 81 AABR07007980.1 ENSRNOG00000053154 ENSRNOT00000077467 1 1 1 93 2 36967187 36969574 CTCTTCCCAAGAACACTGG 58 36967112 36967130 GCAAGAATCACAAACAGCC 58 Novel Rattus norvegicus 81 AC098763.1 ENSRNOG00000060382 ENSRNOT00000078305 1 1 1 98 20 12944628 12944646 CAACACCAATGAGCGAGAC 59 12942301 12942319 CTTCTTCCCAGGACATCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 3 2 2 80 17 62630069 62630089 AGTGGACTGTGAGATATTCAG 57 62618232 62630028 ATGTCAGGATCTTTGCTCTG 58 Novel Rattus norvegicus 81 AABR07059258.1 ENSRNOG00000060937 ENSRNOT00000090966 1 1 1 80 4 12472040 12472058 CACCATCAGGGATGTTCTG 58 12366396 12471999 GAAATCTCAACTTGCTTGACAC 59 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000088340 1 1 2 91 4 16828097 16828120 GGGTTATGAAGATCCATTCTTGAG 59 16828164 16829618 CTCCATCTACAGTGTTATTGTAAGG 59 Novel Rattus norvegicus 81 AABR07044652.1 ENSRNOG00000051374 ENSRNOT00000091690 3 1 1 96 20 15347016 15359791 TTGATGGAAGTTGTGACAGG 58 15346939 15346958 ACATCAGTTGTAAGTTGCCA 58 Novel Rattus norvegicus 81 AABR07008030.1 ENSRNOG00000051672 ENSRNOT00000077151 1 1 1 115 2 39619358 39629035 ATCAAAGATGCTGATCCAAGAG 59 39629111 39629129 ATGAGCTTTGGTCCCAGAG 59 Novel Rattus norvegicus 81 AC107447.1 ENSRNOG00000058221 ENSRNOT00000083635 2 1 1 60 4 31490629 31490647 AGACATCTTGTGTCCTTCG 57 31489693 31489712 CTGTGATAAGGTTGTTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028523.1 ENSRNOG00000060508 ENSRNOT00000091646 2 1 1 80 17 73325754 73332961 GGATCCAAATATGAGCATGGAG 59 73325695 73325716 AGCAAATTGATCTCTGTCAGTG 59 Novel Rattus norvegicus 81 AABR07028534.1 ENSRNOG00000059907 ENSRNOT00000081693 2 1 1 80 17 74003715 74004574 ATTCAAGTTAGTAACCTCGGGA 59 74004611 74004633 CGTATACTCACCTCATAGGAGTG 60 Novel Rattus norvegicus 81 AABR07044805.2 ENSRNOG00000056976 ENSRNOT00000090472 2 1 1 81 20 21216962 21219173 AACAAGATACCCTACATAGTAGCAG 60 21219210 21219230 ATTGTGCTGAAACTCTTCCAC 59 Novel Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 1 1 1 60 17 79978394 79978414 TAAGTGGATGGAACAGAGTGG 60 79964683 79978373 ATCTTTGCCGTTTCGAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008108.1 ENSRNOG00000053901 ENSRNOT00000090040 3 1 1 82 2 44012274 44012293 ATGAGTGCTCTGTAGTTGGG 60 44012338 44013390 CTCTCAGGACCCATCTGAG 59 Novel Rattus norvegicus 81 AABR07071167.2 ENSRNOG00000052169 ENSRNOT00000079806 1 1 1 92 8 103145876 103145896 CTATCACAAGGACAGTGTCAG 58 103145949 103147609 TGTATCTGGTACACCACCTC 59 Novel Rattus norvegicus 81 AABR07071167.2 ENSRNOG00000052169 ENSRNOT00000079806 3 1 1 93 8 103145875 103145894 CCTATCACAAGGACAGTGTC 58 103145949 103147609 TGTATCTGGTACACCACCTC 59 Novel Rattus norvegicus 81 AABR07071245.1 ENSRNOG00000052905 ENSRNOT00000087092 1 1 1 80 8 106631770 106636582 GTGAACAGGTTTCACTTGGA 58 106636625 106636643 GGCATGAAGCACTCTTCAG 59 Novel Rattus norvegicus 81 AABR07028874.2 ENSRNOG00000061654 ENSRNOT00000088066 1 1 1 102 17 89541792 89541812 TTACACCTGTTATACTGGCTC 57 89536072 89541730 GACCTGTCTAATTCATCAGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008309.1 ENSRNOG00000052649 ENSRNOT00000083729 2 1 1 86 2 52783572 52785021 AAGTCTCCAAGCAGAGACC 59 52785070 52785089 AAGATGTCCCTTCTGAACGG 60 Novel Rattus norvegicus 81 AABR07060133.1 ENSRNOG00000054990 ENSRNOT00000090651 3 1 1 81 4 58469413 58485383 TCTTAACTGCATCTCTTGCTC 58 58469352 58469370 CCTGCCTCAGTGGATAGAG 59 Novel Rattus norvegicus 81 AABR07045105.1 ENSRNOG00000058455 ENSRNOT00000077919 1 1 1 80 20 33983793 33983813 GGATCTCAGGCTCTTCTTACC 60 33983849 33985605 CACAGTGATAGAGTCATATTCACTG 59 Novel Rattus norvegicus 81 AABR07071392.1 ENSRNOG00000058516 ENSRNOT00000077214 3 1 1 97 8 113631634 113666798 GGACTTAAGTACTCAACTCCC 58 113631557 113631575 GAATGGAGCTTTCTGGGAG 58 Novel Rattus norvegicus 81 AABR07008424.1 ENSRNOG00000056794 ENSRNOT00000085759 2 1 1 80 2 57943692 57944458 CTTTCTACAATGTCCGAACCTC 59 57943633 57943653 CATCTGACAGCAGTAGATGGA 59 Novel Rattus norvegicus 81 AABR07060341.2 ENSRNOG00000060317 ENSRNOT00000081779 3 1 1 80 4 68445079 68446161 AATACACAGAGTTGATTGGTCG 59 68446199 68446220 TCTCATATCCATAGCGACACAG 60 Novel Rattus norvegicus 81 AABR07008530.1 ENSRNOG00000055784 ENSRNOT00000086657 2 1 1 60 2 63732563 63734649 AATGAGACCTTTCCAGCCC 60 63734672 63734691 CAGTGTACCCTCTGAGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071551.2 ENSRNOG00000060625 ENSRNOT00000083631 2 1 1 82 8 121702877 121703660 GATGCCATAATCTCTGGTCTG 58 121702815 121702834 CATTCACAATGTCACCGAGG 59 Novel Rattus norvegicus 81 AABR07071567.2 ENSRNOG00000055260 ENSRNOT00000085415 3 1 1 111 8 122324378 122324396 TGAGAGGGCTTTCAGAAGG 59 122324469 122329459 AACAGAATACCAGACGAAGGA 59 Novel Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 1 1 1 60 2 68819537 68819557 ACTCGAATTTGGAACCTACCT 59 68819578 68820155 CTCTTCTCCCTGGTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC103694568 ENSRNOG00000052946 ENSRNOT00000085333 2 1 1 86 Y 2654321 2654536 CCACTGAAGTTCTCTAGATAACAC 59 2654579 2654599 TTTACTGAGAAGGTGTTGCTC 58 Novel Rattus norvegicus 81 AABR07071589.1 ENSRNOG00000057234 ENSRNOT00000084169 1 1 1 94 8 123391449 123393399 ACGGATACATAAGATCATGCAC 59 123393454 123393472 CATGTCACCAGTCCTTGTC 58 Novel Rattus norvegicus 81 AABR07071659.1 ENSRNOG00000051659 ENSRNOT00000078088 1 1 1 60 8 126171970 126176405 GACCAGCGATAGATTGGTC 58 126171928 126171948 GCTCCTATTTAATTCGCTCCT 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044011.1 ENSRNOG00000051522 ENSRNOT00000079674 1 1 1 80 19 52887164 52887182 ATCATTCAGGTAGCAGCCA 59 52885952 52887121 TCATACTAGGAATGGCCCTG 59 Novel Rattus norvegicus 81 AABR07044011.1 ENSRNOG00000051522 ENSRNOT00000079674 2 1 1 80 19 52887163 52887181 TCATTCAGGTAGCAGCCAG 60 52885951 52887121 TTCATACTAGGAATGGCCCTG 59 Novel Rattus norvegicus 81 AABR07008970.1 ENSRNOG00000058721 ENSRNOT00000077499 2 1 1 118 2 81722587 81722608 ATGTCCTCATTTGTTCTTCCTG 59 81729495 81729513 AAGGGTCCACGTAAGATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.4 ENSRNOG00000058206 ENSRNOT00000085794 3 1 1 80 7 137515437 137515456 GAGAAGACTGAATCAGCCAG 58 137515497 137526264 GTGATCCTCTTCCATTACCTC 58 Novel Rattus norvegicus 81 AABR07058788.1 ENSRNOG00000051660 ENSRNOT00000086732,ENSRNOT00000087127 3 2 2 61 7 137518217 137518238 CCAACACTTCTTCTAACAGCAG 60 137516098 137516116 CTGTTCAGTGCAAACAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071813.1 ENSRNOG00000052222 ENSRNOT00000083653 3 1 1 143 8 131955610 131955628 TTATCAGGACCTGCCAAGG 59 131956558 131956576 GCAGACATTCCTAATGGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044171.2 ENSRNOG00000055617 ENSRNOT00000086665 3 1 1 83 19 61316533 61316555 CAGAGAATCAACTACAGAAGAGC 59 61313342 61316490 GTTTGGATCATGCCACCTG 59 Novel Rattus norvegicus 81 AABR07009260.1 ENSRNOG00000053978 ENSRNOT00000086047 2 1 1 80 2 90606129 90606639 GGAAGAATGATTTGGAGATTGG 58 90606678 90606698 AGAAGTACAGCTGTAAACAGC 58 Novel Rattus norvegicus 81 AABR07009338.1 ENSRNOG00000055758 ENSRNOT00000091883 1 1 1 80 2 93460431 93488480 TGAGTGCTTGAATCATTTGC 57 93460370 93460388 GCCTCACTTGAACAATGTG 57 Novel Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 3 1 1 171 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659571 144659591 GCCATTTGTGGAAGTATACGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058976.1 ENSRNOG00000054065 ENSRNOT00000077914 2 1 1 108 7 145727982 145728001 GGTTTAGGGTTAGGGTTAGG 57 145728311 145728329 CCTACCCTAACCCTAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009600.2 ENSRNOG00000056581 ENSRNOT00000091685 2 1 1 80 2 105589410 105589431 GAACTGATGAGAGCTCTTTACC 59 105589472 105633740 ACTGTACATGGAAAGGCCT 59 Novel Rattus norvegicus 81 AABR07009638.2 ENSRNOG00000051963 ENSRNOT00000084802 3 1 1 97 2 106739329 106739350 TACACATTTATGGCAGAAGAGG 58 106741767 106741788 GCATTGTGTCAGTTTAATTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC116283.1 ENSRNOG00000059157 ENSRNOT00000087200 3 1 1 81 2 123454837 123464467 GGCAAACTGAACCAAAGCA 60 123454774 123454795 CTTTCAATGTAGCATGAGCCTC 60 Novel Rattus norvegicus 81 AABR07010330.1 ENSRNOG00000054694 ENSRNOT00000083936 2 1 1 80 2 132338475 132339215 GAGGAAAGTCCTATAGCAGGAC 60 132338416 132338437 TGACCTTAGAACGTCTTCAGTC 60 Novel Rattus norvegicus 81 AABR07010585.1 ENSRNOG00000059063 ENSRNOT00000084748 1 1 1 89 2 141576496 141576514 CTTTGACCTACGTCAGCCT 59 141577881 141577899 CTGGAGAGCTGAAGGTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010760.1 ENSRNOG00000061744 ENSRNOT00000088897 1 1 1 60 2 150464494 150464516 CCGGAGAATGAAGATACATACAC 59 150477330 150477351 TAGAATGCTCTTCAGTCTTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010777.1 ENSRNOG00000052971 ENSRNOT00000087518 1 1 1 80 2 151314372 151314391 CAGACATCTCCAGAGTCTCC 59 151312873 151314331 CCAGCTAGTAATCTGCAAACC 59 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 1 1 2 100 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399216 156399590 ACCCATCAAGTTCCATAGGA 58 Novel Rattus norvegicus 81 AABR07012061.1 ENSRNOG00000060178 ENSRNOT00000081543 2 1 1 80 2 184597236 184599266 TCTGCTAGTTGGGCATCAG 60 184599308 184599328 GGAAACTTGTGAATGCTTGGT 60 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 1 1 1 60 2 196554734 196554752 TCGTTGTCCTTGTGTTCGT 60 196554484 196554710 GAGCATTCTTTGTAGGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC131411.2 ENSRNOG00000053017 ENSRNOT00000078024 3 1 1 105 14 11321916 11321935 ATGACGATCACCTACAGCTG 60 11316947 11316965 CTTGCCTAAGCACCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014499.1 ENSRNOG00000060060 ENSRNOT00000088642 3 1 1 81 14 18155484 18157136 GTATGTGACCTTCAGAGATGG 58 18155423 18155446 GTGTTTAGATGTAGACTAGAGCTG 59 Novel Rattus norvegicus 81 AABR07014512.1 ENSRNOG00000057178 ENSRNOT00000086361 3 1 1 80 14 18845158 18845713 TTCTGAGGAATGCTATGATGCT 60 18845751 18845772 CTTCTGATTCTGGAGGTTTCTG 59 Novel Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 1 1 1 60 2 206157124 206162741 CTCAGGAAATTTGTATTTGCCC 58 206157085 206157105 TAAGGAGATGTGAGGGAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013123.1 ENSRNOG00000051918 ENSRNOT00000085477 1 1 1 60 2 223607700 223607718 TCCTCTCCCTTCTTCACTC 58 223609740 223609761 TGTGGTTCTCTAGAAAGTAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013323.1 ENSRNOG00000054971 ENSRNOT00000081788 1 1 1 80 2 233448989 233449009 GAATCTCCTGCATCCAAATCC 59 233444054 233448951 CTTTCCACTATGTGTAACCTCAG 59 Novel Rattus norvegicus 81 AABR07013410.3 ENSRNOG00000059757 ENSRNOT00000085253 1 1 1 94 2 236047247 236051841 AAAGACCCAAAGAGACGGG 60 236047171 236047189 GAAAGCAGATGCGGTTCAG 60 Novel Rattus norvegicus 81 AABR07013550.1 ENSRNOG00000054761 ENSRNOT00000086668 1 1 1 88 2 243344246 243344873 TCCAAACCACCCTAGTGTG 59 243344176 243344194 AGCTGTAGGCAGACTTGTC 59 Novel Rattus norvegicus 81 AABR07013558.1 ENSRNOG00000051702 ENSRNOT00000091469 3 1 1 80 2 244026606 244034346 ATTACAAGGTCCCACCCTC 59 244026544 244026563 CACCTCCTCTGTTCATTCAC 58 Novel Rattus norvegicus 81 AABR07013784.1 ENSRNOG00000061028 ENSRNOT00000080709 2 1 1 80 2 256567934 256568660 TGGAATAATTGCAAGACCCAC 59 256568701 256568720 CTTCATCCTCCCTTTGAACC 58 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000007671 2 1 4 82 7 115858879 115860521 TTCTGCAGCACATAGAGCA 59 115858815 115858833 CAGAAGCAGGTAGGTGGAC 60 Novel Rattus norvegicus 81 AABR07073536.1 ENSRNOG00000060023 ENSRNOT00000079089 1 1 1 60 X 70570821 70570840 CCAGCTTATGTCTGAGACTC 58 70570775 70570794 TCTACATTGCAGAGATCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000051874 ENSRNOT00000077463 1 1 1 69 17 28020951 28020969 TTATCCATTGCACTCCGGA 59 28020900 28020918 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034131.1 ENSRNOG00000058877 ENSRNOT00000083966 2 1 1 72 11 54829718 54829736 TGAGGTCATGGCAGATCTG 59 54829786 54829805 GAAAGGAAAGAGGAGAAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012295.1 ENSRNOG00000052006 ENSRNOT00000071718 2 1 1 268 2 192343229 192343247 TGTGTCTTCCTGCTGTAGC 60 192342978 192342996 CAGCAATCTCCAGACTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054919 ENSRNOT00000091314 3 1 1 60 1 61974153 61974174 ATACAGAGAAGATTAGCATGGC 58 61974114 61974133 GGAATGCTTCACGAATTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052408 ENSRNOT00000086506 2 1 1 61 4 52291573 52291591 GTGTCAGTAGGTGGCAGAG 60 52291530 52291550 ATGTTCTTTGGTTGGAACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054060 ENSRNOT00000083440 2 1 1 60 1 249097620 249097639 TAGACTGGTGTCTCCTTCCT 59 249097661 249097680 GATTCACAGCTTTGGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061309 ENSRNOT00000085521 1 1 1 60 17 63251800 63251819 GTGAATGACCCTTACTGTCC 58 63251841 63251860 TCTTTGTCAACTGAGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 1 2 4 80 19 17440622 17440643 CAGACTACGTTGAAGTAGACAG 58 17439757 17440584 AGTAGTAAACAACAGACTCACC 58 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546 2 1 5 81 6 115155625 115155646 TCATGAAGAAATGATAGGAGGC 58 115144838 115155584 GTGGAACCCAAAGTGTACTC 59 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000092119 2 1 2 86 10 4487999 4488719 CAGGCGAGCATAAGAAAGG 59 4488769 4488787 TTCACTCCCATTCAACAGC 58 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000071395 1 1 2 90 5 77315217 77315930 TTTGTTGAGCATGACGGAG 59 77315145 77315166 CGTTCTTGACATTAACAAGGTG 58 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000041963 1 1 3 144 X 65413513 65423965 TCTGATCATTTCAGTGAGAGTC 58 65412717 65412736 CACATATTGGTGTCCCATCC 58 Novel Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 1 1 1 67 12 54648 54666 GTAAGTTCAGCTCCCAGAG 57 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 1 2 2 64 X 66516477 66516498 CCTTGTTCCAAATGTAGTAGGA 58 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054445 ENSRNOT00000082413 1 1 1 60 12 29367143 29367164 GAATGGAGCAGAAAGATAGCAC 60 29367104 29367125 CGAATCCATGAATGTATGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000056307 ENSRNOT00000081069 2 1 1 60 12 28114695 28114714 CCTAAAGGTTAAACAGGGCC 59 28114654 28114673 AGTTTACCATGCAGTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 3 1 1 61 19 37021481 37021504 CTACCCAAGTACACATGATTTCAG 60 37021283 37021301 TTTGTTGCAGTGATCGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000051460 ENSRNOT00000088709 2 1 1 60 14 13670689 13670711 GGAACGATACAGAGAAGATTAGC 59 13670731 13670749 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056667 ENSRNOT00000084890 2 1 1 66 1 91464545 91464565 CCAGTAGGAGTCAGAGAAGAG 59 91464593 91464611 ATTCAGATGCCCACAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000046602 ENSRNOT00000075002 1 1 1 80 1 214692101 214692583 TAAGACATGCATCCATAACCC 58 214692623 214692643 CAGCCATTGTAGGAAATCTCC 59 Novel Rattus norvegicus 81 AABR07032277.2 ENSRNOG00000057224 ENSRNOT00000080030 2 1 1 85 18 59328745 59328766 CCTGAAGTGGAATAATCTTGGA 58 59328811 59328832 ATGAACAGAAACACAGTCCC 58 Novel Rattus norvegicus 81 Rn60_13_0803.1 ENSRNOG00000051311 ENSRNOT00000076718 2 1 1 80 13 75366065 75366904 CCACTTCTTGATCTAGGAAGG 58 75366944 75366964 AGTGAAGTCTTCTTCACTGTC 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000057636 ENSRNOT00000089047 2 1 1 60 2 94735096 94735117 CGGATTATTGCTAATTGGAAGG 58 94735057 94735077 AAGCTAGTCATCTTGGAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006081.1 ENSRNOG00000016597 ENSRNOT00000022226 2 1 1 60 1 218972530 218972548 ACATCTGGTGTAAACTGGG 57 218972488 218972506 CCAAGATAGGACGTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058612 ENSRNOT00000087422 3 1 1 79 1 16969943 16969961 ATGCTAGCTTTGGCAACAC 59 16970004 16970022 TTGCGTGTTATCCTTGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 3 1 1 60 X 107634271 107634291 AGAGAAACATACAGTCGTTCG 58 107634312 107634333 CAGTTCTCAAAGGTTTCTTCCG 60 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968 1 1 4 96 9 88253748 88253766 TCCAGGTAAGCTCTTGGTG 59 88246708 88253688 AGGTTCACCTTCTGGACTG 59 Novel Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 1 1 1 60 4 183941459 183941477 CAGAAGGATCCTGGAGAGC 59 183941503 183941521 ATACTGCTTCAGACTCGCA 59 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000031927 3 1 3 81 X 73502427 73504714 ACAGATCCAGGTGAATTCTC 57 73504756 73504776 CCAATCTTTGTCTCTTAGCAC 57 Novel Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 1 1 1 65 8 45701593 45701613 ACAGGAATAAGTCAGAAGTCC 57 45701546 45701564 TACGGCCATGAAGATAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049497.1 ENSRNOG00000052622 ENSRNOT00000082339 2 1 1 64 5 124275960 124275978 ACTTCACCTCATCCCACAG 59 124276011 124276029 ACACTCTGTTCCCTCTTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045405.1 ENSRNOG00000059487 ENSRNOT00000077765 1 1 1 120 20 46519520 46519552 CTGTTAACCATGCAGAGGTC 59 46519635 46519653 TAGGAAGATCGGCGTACAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054095 ENSRNOT00000090578 2 1 1 60 13 54317121 54317139 ATTTGGTGGCAGAGATGAG 58 54317079 54317098 ATCATTCAGATGCTCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052155 ENSRNOT00000077187 1 1 1 60 13 96290027 96290051 GAACAATACAGAGAAGATTAGCCTG 60 96290067 96290087 TGCTTCATGAATTGGCTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047744.2 ENSRNOG00000060249 ENSRNOT00000036616 1 1 1 65 5 45556455 45556476 CCTAGCCATTCTGACTTGTG 58 45556409 45556427 TAGTCATCAGGGAAAGGCA 58 Novel DesignRelaxed Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 1 2 3 80 X 74014954 74014977 AGCATTCCTATCTAGAGAAGACTG 59 74012049 74014915 GACTGGCTTGCTGTATCCA 60 Novel Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 1 1 1 60 7 121773746 121773765 GATCACTGTCACTTCTGAGG 58 121773876 121773894 GGTTGATCTGGAAGTAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147 2 1 4 82 1 134885497 134887639 ACCCGGTATCTTAGAAGATGG 59 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 2 1 1 76 9 43488583 43488603 CTGCCTGGTATCTTGTTTCTG 59 43488522 43488541 AGTCAAACTTCCTCTGTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 2 1 1 61 9 4107559 4107578 TAGACTTTCCTCAGCCTGTG 59 4107659 4107682 CGTAGTTTCTATCAGTATTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014769.1 ENSRNOG00000052631 ENSRNOT00000089890 2 1 1 83 14 31058214 31058235 CTTCAGAATTTCAAGAAGTCCG 58 31003005 31003025 AGCACAACATGTAGCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 2 1 1 60 18 4600339 4600360 ATGGTGAGGAGAGTAATATCGA 58 4606759 4606777 CCATATCAGGAAGCCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031221.1 ENSRNOG00000053552 ENSRNOT00000082767 3 1 1 60 18 4600340 4600360 TGGTGAGGAGAGTAATATCGA 58 4606759 4606778 TCCATATCAGGAAGCCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 2 1 1 71 14 44876772 44876790 CCATCACCTCCCATAATCG 58 44872723 44872744 GGTGGGATATAATTTACTCCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 1 1 1 60 5 17123487 17123508 TTAGATCTTGCTTACATCGCAG 59 17113844 17113863 TGTTGGAATTCAACAACCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030265.2 ENSRNOG00000057876 ENSRNOT00000086411 1 1 1 100 10 78686127 78686145 TCAGTGCCTCAGGATTGAG 59 78687057 78687075 GACAACGACGATGTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 1 1 1 60 4 121701578 121701599 ACTGTGCTCTTTACACAATCAC 59 121703144 121703163 ATGAAGTGCCTTGTCATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 1 1 1 60 4 146296366 146296384 CACAACCATGAGAAGACCC 58 146294965 146294984 CAAGCACTTACTGTTGATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 1 1 1 60 15 29664804 29664822 CAGTAGCCTGGAAACTCAG 58 29666864 29666882 CCTCTTGAGGACACTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 1 1 1 64 4 181524898 181524916 ATGTCGGTGACATCCACAG 60 181524177 181524196 CCTCTTCTCTTGCTTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000089677 2 1 2 104 5 142405846 142405864 GTCCAATGACACATACCGG 58 142405338 142405779 GGCATGAACTTGTCATTGAC 58 Novel Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000089677 3 1 2 105 5 142405847 142405865 TGTCCAATGACACATACCG 58 142405338 142405779 GGCATGAACTTGTCATTGAC 58 Novel Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957 3 1 2 80 15 46494352 46494370 AAGGCAATGAATCAGGGTG 58 46494414 46495152 TGAGGTGTTTGATTCTGGG 57 Novel Rattus norvegicus 81 AABR07018290.1 ENSRNOG00000060640 ENSRNOT00000087151 3 1 1 60 15 50309985 50310004 CCAGCCTTCTATCACATTGG 59 50301617 50301638 CTCATAGGTGCAACATAACAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 3 1 1 60 18 71990613 71990631 ACCTGCAGGATCCATTCTC 59 72001722 72001741 GCAATTCAGGAGCTTTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613 1 1 2 80 15 87464250 87464268 GAGAACAGGCTCTAGCCAG 60 87456922 87464206 CTCCGCTTGCATCTTTGTG 60 Novel Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613 2 1 2 80 15 87464304 87470772 TAGAAGATGGAAGAGGCCC 58 87464242 87464260 ATCTGAGTCTGGCTAGAGC 58 Novel Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 1 1 1 60 6 67771845 67771864 CTCTGTGCTACCTCTTACAC 58 67775162 67775183 TCTTAAATTTCCATCCTGCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033564.1 ENSRNOG00000059467 ENSRNOT00000087021 2 1 1 62 11 27599621 27599642 TGAGTCAGAAATTGAGAAGCTG 59 27607298 27607317 ATGTGATCTCGCTCCTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 1 1 1 60 3 30248551 30248570 ATTAAACACCATGTGACCCA 58 30247188 30247209 TACTTCCTATGGAATGGATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 1 1 1 60 13 80460425 80460443 ACGTTCAGATCCGATGGAG 59 80457711 80457734 TAGAGATACTAGGAGTCCAGTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 1 3 3 80 6 125287242 125287260 TGGATTGATGACAGCCCAG 60 125279171 125287201 TGAGTTGTATGAGCTGATACCC 60 Novel Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 2 1 1 60 3 61124774 61124792 GCTCAGTCACACTTCTTGG 59 61124814 61124834 AAGCTGTAATCAAGGATGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 1 1 1 60 3 62622695 62622716 GACTGATGCTTCTTCATGAGAC 59 62621878 62621896 GAACACTTCGTTCTTCGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 3 1 1 71 6 133642479 133642497 CCATCCTGGATAGTGAACC 57 133632957 133632976 TATTTCTACCCAGGCAATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07052758.1 ENSRNOG00000059883 ENSRNOT00000088478,ENSRNOT00000079460 1 2 2 82 3 74228513 74228534 GGCTGAAGGAATTATTCATGAC 58 74228242 74228470 TTAGCTTGTTGCACTCGTC 59 Novel Rattus norvegicus 81 AABR07022072.1 ENSRNOG00000058837 ENSRNOT00000091736 2 1 1 84 13 105919491 105919509 AGACCCTATGCAGAAAGCC 60 105918506 105918525 TCTATGGTAGCAGCATCGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776 1 1 2 80 6 143757078 143757096 CTGTGAACTCACTGGTGTG 58 143749809 143757034 GGACAAGACATATGCAGGG 58 Novel Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000078486 2 1 2 84 3 108641405 108641425 GAGACTCTTGAGTTCCTTCCT 59 108640273 108641359 TTCATTTGCTTCCCTGAGC 59 Novel Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 3 1 1 125 3 155687631 155687649 AGAAGATCTTCGCTGGTCG 60 155679344 155679362 TCATAGACATGGCACTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 2 1 1 61 12 42902412 42902432 CACACGATGCTAACTAAGCAC 60 42899744 42899762 GACTCTTCCTCTGGGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 3 1 1 61 12 42902413 42902432 CACACGATGCTAACTAAGCA 58 42899744 42899762 GACTCTTCCTCTGGGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036575.1 ENSRNOG00000058414 ENSRNOT00000086428 1 1 1 60 12 49031202 49031220 CTCATGCAGAAGCACAAGG 59 49034038 49034056 CTTGAATCTGCCCGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 3 1 1 61 1 229097646 229097664 GTCACCTTGTTCAAGGAGC 59 229100222 229100240 GTTCCACCATATCCACCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922 3 1 2 95 16 87443340 87443358 TATCACGAGGCATTGATCC 57 87470826 87501485 CTAATAATGACCTCTTCCTGCA 58 Novel Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 1 1 2 60 19 11671460 11671478 TGTTTGTACAAGACTGCGT 58 11686692 11686710 TTGAGAGTCTCCGAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 3 2 3 106 8 23492941 23495981 CGAACACAAGACCAAGAGAC 59 23496047 23509003 TTTCCTTTCAACCTTGCTTCTG 60 Novel Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 1 1 1 60 19 22770751 22770769 CACAGACTCACTGCTAACC 58 22775622 22775640 GTCCTCTGCTCTTAACGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 3 1 1 60 7 62839117 62839135 CTTACTCCAAACAGCCCTC 58 62839881 62839899 ACGCACTCATAGAGGTAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524 2 1 2 89 7 75855168 75855186 ATGGTGAGGTAGTGACCCT 60 75855237 75858275 ACTGACAGAGCTTCTGATGTC 60 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 2 1 1 61 10 1581169 1581187 GGCTACATCCAGATGACAC 58 1582477 1582498 ATCCACAGAAAGAATCCTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 3 1 1 107 8 114178846 114178864 GTTAAACAACCACACCGGT 59 114176714 114176733 AGAACTCCACAGATCATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 3 1 1 206 8 124166661 124166679 TCGTTCGGTTCATCTCCAC 60 124167026 124167044 AGATCACTTACCCAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000077718 2 1 2 83 7 131431132 131431150 GAAGTCTGCTGAGACATGG 58 131375148 131431086 GAAGATGTCAGAGGTCTCAG 57 Novel Rattus norvegicus 81 AABR07058935.1 ENSRNOG00000052893 ENSRNOT00000079705 2 1 1 172 7 144677358 144677376 CCTCGCCTACTTCTCTGTG 60 144659570 144659590 AGCCATTTGTGGAAGTATACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 2 1 1 106 2 126934588 126934609 GCTGATGAACGATGGAATACAC 60 126933491 126933510 CCACTGTTCTTCTCTTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751 1 1 2 80 2 156341582 156341602 ACACAACATAACGGAACTTCC 59 156317639 156341545 GTTGCTGTTACATATAGAGGAGTG 59 Novel Rattus norvegicus 81 AABR07072763.1 ENSRNOG00000057843 ENSRNOT00000089021 2 1 1 61 2 196554733 196554751 CGTTGTCCTTGTGTTCGTG 60 196554482 196554500 TGGAGCATTCTTTGTAGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 2 1 1 64 2 222721568 222721587 GGTAACATGTGGCTATTGGA 58 222783273 222783291 TCGATCAGTATGTGGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-nd1 ENSRNOG00000030644 ENSRNOT00000047550 1 1 1 60 MT 3151 3173 CAAACCATCTCTTACGAAGTCAC 60 3193 3211 CGCTTATTAGGAGGACGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd5 ENSRNOG00000029971 ENSRNOT00000048767 2 1 1 60 MT 12418 12438 TTCATCCATGACTCCCATCAG 60 12459 12478 GAGTGTAGTAGGGCAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cma1 ENSRNOG00000020563 ENSRNOT00000067539 1 1 1 80 15 34601934 34602153 TACTGAAGTTGAAGGAGAAAGC 58 34601875 34601895 GTGGAATGAAGTTGAAGTTGG 58 NA Rattus norvegicus 81 Cma1 ENSRNOG00000020563 ENSRNOT00000067539 2 1 1 80 15 34601373 34601702 TGTATACAAGGGAGACTCTGG 58 34601313 34601331 GCATTCGGATGTACGTAGG 58 NA Rattus norvegicus 81 Cysltr1 ENSRNOG00000037845 ENSRNOT00000042799 3 1 1 60 X 77675096 77675114 TGTTCACAAAGGCAAGTGG 59 77675054 77675072 TAAGGCATAGGTGGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 3 3 3 88 5 171525695 171544602 AAACCTGCCAAGATGTGGA 60 171544653 171544672 TTCACAGAGGTAAGAACCGG 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 2 2 2 81 2 178744933 178744953 CAATAAGGGCTTCTTTGACAG 57 178744995 178748146 TGCAGATTCAGGAAACTCTC 58 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000009181,ENSRNOT00000076134 3 2 2 88 3 37938600 37938619 CCTGATGTGGGATATTGGTG 58 37936936 37938552 CCACCACAACTATTACAAACTC 57 NA Rattus norvegicus 81 Mir6314 ENSRNOG00000050085 ENSRNOT00000071550 1 1 1 63 2 211682745 211682763 ATAAGGTCGCAGCCTTCAG 60 211682790 211682808 ACCATTGAGACCACAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc4 ENSRNOG00000011133 ENSRNOT00000044028,ENSRNOT00000015437 2 2 2 80 2 143568670 143579544 GCATTTGTAAAGTACAGTGCTC 58 143579585 143579603 GAATAAAGCCTCTGCCACC 59 NA Rattus norvegicus 81 Ggnbp1 ENSRNOG00000000486 ENSRNOT00000000577 3 1 1 80 20 5620413 5621877 CTGCCTAATTGACTTTGGAGAC 59 5621915 5621936 TACAAGCCAAGGAGATAGTTCC 60 NA Rattus norvegicus 81 Tmem89 ENSRNOG00000031141 ENSRNOT00000049240 3 1 1 61 8 117661264 117661283 CTAAGGTGGCTAAGGGTCAG 60 117661694 117661712 TCGTTTCCAGTGTTTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000081757 1 1 2 88 15 37402346 37408389 GAGACTCAGAAGGAGCGTG 60 37402276 37402294 CTTCCCTATGCTGGTCGAG 60 NA InUTR Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000081757 3 1 2 93 15 37402350 37408394 GGAACGAGACTCAGAAGGAG 60 37402276 37402294 CTTCCCTATGCTGGTCGAG 60 NA InUTR Rattus norvegicus 81 Gnb1 ENSRNOG00000016638 ENSRNOT00000041789 3 1 1 80 5 172962894 172965547 CACAAACAAGGTTCATGCCA 60 172965589 172965608 GCCACATAATTCCCAGAAGG 59 NA Rattus norvegicus 81 Txlng ENSRNOG00000004971 ENSRNOT00000006843 2 1 1 80 X 33599810 33618590 CCGGAGAAGTTTGAAATTGG 57 33618631 33618651 AGACTTACATACCATGTCTGC 58 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204,ENSRNOT00000063943 3 2 2 80 15 40542410 40542428 TGGAACAGGACTCTTTGGA 58 40540159 40542369 GATGTAGTAGCTGTTGTTCCTG 59 NA Rattus norvegicus 81 Foxl2 ENSRNOG00000017190 ENSRNOT00000023091 2 1 1 60 8 107194752 107194771 GAGAAGAGGCTCACTCTGTC 60 107194794 107194812 CGTAGAACGGGAACTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap26-1 ENSRNOG00000048212 ENSRNOT00000074102 2 1 1 60 11 28614107 28614125 AACTGTCAAGACCACACCT 59 28614065 28614084 TGATAGGTTCTGCAAAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1531 ENSRNOG00000045748 ENSRNOT00000075303 1 1 1 60 11 43194951 43194974 GCTTCTTCCATACAAATCAGTACC 60 43194992 43195011 ATAGGACACGGGCATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1531 ENSRNOG00000045748 ENSRNOT00000075303 2 1 1 60 11 43194980 43195001 GACCATTGTAGTCTCTTATGCC 59 43195019 43195040 CTTCTCAGACTTCATGTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ulk3 ENSRNOG00000038459 ENSRNOT00000025885 2 1 1 80 8 62371418 62371628 GTCATCCTGTACGAAGCTC 58 62371669 62371690 GCTACGAATCTTCTCTTCTAGC 59 NA Rattus norvegicus 81 Mir3554 ENSRNOG00000035606 ENSRNOT00000053729 1 1 1 60 5 107206561 107206580 GCAGGTTCTCAGTTCAACAG 59 107206520 107206540 CTGAAACTTGGAACTGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk4 ENSRNOG00000001618 ENSRNOT00000002206 1 1 1 93 11 38265720 38265738 CTTCCTGCATTGCATGTCC 60 38262145 38265668 GTCAGAAATCTTGACATGGTAGTG 60 NA Rattus norvegicus 81 Dusp14l1 ENSRNOG00000046368 ENSRNOT00000074141 2 1 1 60 2 140836511 140836534 CTTCAGTTAAGATGGTACAGACAC 59 140836550 140836571 GACTCCTTCTCATAAACGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr500 ENSRNOG00000056110 ENSRNOT00000084704 3 1 1 60 3 73736218 73736238 ACGTTGACTGAATTCATCCTG 59 73736178 73736196 ACAATGGGACCTGAAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam163b ENSRNOG00000006591 ENSRNOT00000008660 3 1 1 105 3 5658586 5661544 TCGACTCCAGTATTACTGCTG 59 5658501 5658519 GTTGCGGTTGGAATGAAGG 60 NA Rattus norvegicus 81 Srpr ENSRNOG00000010543 ENSRNOT00000015177 3 1 1 80 8 36411536 36411555 TTCACTCATGAGGCTCTCAC 60 36411596 36411888 GATCTTCTGAAAGCCAACCAC 60 NA Rattus norvegicus 81 AABR07033817.1 ENSRNOG00000046133 ENSRNOT00000047347 2 1 1 85 11 39443174 39448312 TGGGTCCATAGCGATTAGG 59 39443107 39443128 CTATGTCCAGCTCCTTAAAGTC 58 NA Rattus norvegicus 81 Kcne2 ENSRNOG00000029811 ENSRNOT00000040844 2 1 1 66 11 32440385 32440404 ATATCAGCACTCCTGTGAGG 59 32445738 32445757 TCAAGTTGGCTAAAGTGGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr7 ENSRNOG00000015289 ENSRNOT00000020514 2 1 1 60 1 70485086 70485106 CTTTATGTATTCCAGGCCCAG 59 70485046 70485066 GACTGATAGCACCTTGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif9 ENSRNOG00000020891 ENSRNOT00000028364 3 1 1 80 8 118787626 118787646 ATCAAGCAGGAGATTGATGTG 59 118787688 118789158 GTTCTCGTACTCTCCTTGC 58 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629,ENSRNOT00000085690 1 2 2 80 2 188327003 188330246 ACTACAGACCCAAAGAGCC 59 188330288 188330308 TAGTCCATACTCATGCTCTCC 59 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 1 2 2 82 2 30181800 30181823 GCCTAAGATAACTGTCATAATCGG 59 30181375 30181764 GAAATCTTGGACTATATGCTCTGC 60 NA Rattus norvegicus 81 RGD1565472 ENSRNOG00000046991 ENSRNOT00000072806 2 1 1 89 11 39766884 39767638 CATCCTCACTGTCCCACAG 60 39766813 39766832 TTCTTATGCTGTTGCTGCTG 59 NA Rattus norvegicus 81 LOC686967 ENSRNOG00000046235 ENSRNOT00000074881 1 1 1 60 1 229101056 229101074 TTTCAGCCTTTGTCACCAC 59 229101098 229101116 GCATAGCGATCATAAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crabp2 ENSRNOG00000022101 ENSRNOT00000025183 2 1 1 85 2 187326041 187326059 AACAGAGGCTTCTGAAGGG 59 187326106 187326470 TGTCATGGTCAGGATTAGCTC 60 NA Rattus norvegicus 81 Npy4r ENSRNOG00000061026 ENSRNOT00000083105 1 1 1 60 16 10490101 10490119 CCAATAGCATCCTGAACGA 57 10490059 10490077 TCCAGAAACTCCACAACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka2 ENSRNOG00000003949 ENSRNOT00000065678 1 1 1 80 X 36867157 36867177 TTAATCAGAGGCAAAGATGGG 58 36863687 36867120 CTTATACTCTTCATCCACCTTGTC 59 NA Rattus norvegicus 81 Zdhhc14 ENSRNOG00000029049 ENSRNOT00000043521 2 1 1 80 1 46578307 46578327 GTTTCACCTGCAAGATCTTCC 60 46578367 46605534 GGTGATCAAACTGTTCTACGC 60 NA Rattus norvegicus 81 Taar7e ENSRNOG00000046903 ENSRNOT00000046379 1 1 1 60 1 22479812 22479833 TGTCTACTCTAAGGTCTTCCTC 58 22479773 22479793 GCCAATCTTCTCGATGTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037395.2 ENSRNOG00000052559 ENSRNOT00000075010 3 1 1 60 X 19855155 19855173 AACACATGGAAACAACCCT 58 19855195 19855215 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562550 ENSRNOG00000027263 ENSRNOT00000037659 2 1 1 90 2 52362527 52362546 GCAGAAGTTCTCTTAGCTGG 58 52362598 52364843 TTAAAGCGGCCTGTAAAGAG 58 NA Rattus norvegicus 81 Gdf6 ENSRNOG00000007810 ENSRNOT00000010266 1 1 1 80 5 23056851 23071615 CAGAGGACTGGACGATCTC 59 23071659 23071677 TCTTTGTCTGAGAGCGTGG 60 NA Rattus norvegicus 81 Gdf6 ENSRNOG00000007810 ENSRNOT00000010266 2 1 1 82 5 23056851 23071615 CAGAGGACTGGACGATCTC 59 23071660 23071679 CTTCTTTGTCTGAGAGCGTG 59 NA Rattus norvegicus 81 LOC102547059 ENSRNOG00000046652 ENSRNOT00000072762 2 1 1 80 1 88325008 88326683 GCTTTCACTGAGTCTTGCC 59 88326727 88326745 CTCATAACCATCCAGGGCT 59 NA Rattus norvegicus 81 LOC503435 ENSRNOG00000024350 ENSRNOT00000031235 1 1 1 60 X 23414561 23414582 ATGTGTTACCAATACAGCTACC 58 23414602 23414621 GCTGAGCAACACGAATATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000071353 3 1 2 82 2 45801863 45801881 CTCTGGGAAGACCAGTCTG 59 45801926 45858993 GGATATTGTCAGCTCCTGTG 58 NA Rattus norvegicus 81 LOC100912317 ENSRNOG00000045793 ENSRNOT00000074963 2 1 1 60 8 42266138 42266157 ACATTCTTGGTTTCCATGCT 58 42266179 42266198 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1260 ENSRNOG00000046762 ENSRNOT00000075251 1 1 1 60 3 158851964 158851984 TATTTCTGTGATCTCCTCCCT 58 158852004 158852024 CCTTATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hccs ENSRNOG00000025910 ENSRNOT00000037862 3 1 1 80 X 26298659 26301274 AGCTCTTCATGCTCATGAG 57 26301318 26301336 GCCCTTGGTGAATACTCTC 58 NA Rattus norvegicus 81 Zcchc3 ENSRNOG00000007520 ENSRNOT00000009859 2 1 1 60 3 147879411 147879430 GAGAACTTTGTGGTCTTGGG 59 147879370 147879388 GGAAGAGGATGAAGAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc66 ENSRNOG00000028380 ENSRNOT00000039311 1 1 1 80 16 3116342 3117427 CAACTAGAACACCAGAAAGCA 59 3116282 3116301 CCTTCTCTGTTCTTCCTCCA 59 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 2 2 2 80 2 43290923 43290943 AACGCTACGATTACTTTGCTC 59 43290984 43291083 CCATATAGTCCGTAACGCCA 60 NA Rattus norvegicus 81 Ercc3 ENSRNOG00000013180 ENSRNOT00000018422 3 1 1 80 18 25040633 25040651 AGTGACATCACCGAGTACC 59 25040692 25042323 AGTGCACAGCTTAATAAACTGG 59 NA Rattus norvegicus 81 AC096024.1 ENSRNOG00000015367 ENSRNOT00000020690 3 1 1 60 1 141447132 141447151 GGTCTTCAGAACCCTCTCAG 60 141447172 141447192 CCTGCTGGTCTCTAAATTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agxt2 ENSRNOG00000017821 ENSRNOT00000024035 1 1 1 80 2 60367014 60367035 AACACTTACATCACTTCAGCAC 59 60367074 60372942 CTTCAATCACCTCAAGCACAG 60 NA Rattus norvegicus 81 Olr464 ENSRNOG00000051431 ENSRNOT00000083865 2 1 1 60 3 73250429 73250447 AAGACACAAAGCCTTCTCC 58 73250468 73250489 ACCAAAGAAGATAGTAACAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc1 ENSRNOG00000017839 ENSRNOT00000024113 1 1 1 81 1 80262037 80262055 CTACATCCATGAACGGCTG 58 80262100 80263566 GGGATCTTTCACATCCACC 58 NA Rattus norvegicus 81 Hars ENSRNOG00000028105 ENSRNOT00000039291 3 1 1 80 18 29616091 29616113 GCAGAGTGCCTAAAGATTATGTG 60 29615900 29616053 GCGCCTATCATTTACCTTGAC 60 NA Rattus norvegicus 81 Mill1 ENSRNOG00000017699 ENSRNOT00000083546,ENSRNOT00000035286 1 2 2 80 1 79649702 79649720 ATCTGCAGGAAATGGTGGA 59 79649763 79649977 TGTGAAGGCCCTTATCTTGG 60 NA Rattus norvegicus 81 Cct3 ENSRNOG00000019090 ENSRNOT00000025824 1 1 1 80 2 187684196 187684216 CGCCGCTATATTAAGAATCCT 58 187684257 187685115 AATGTCAGTCTGGCTTTCTC 58 NA Rattus norvegicus 81 Zbtb11 ENSRNOG00000001613 ENSRNOT00000034940 3 1 1 80 11 47087271 47087289 GTGAGCTATGCGTCAAGTC 59 47085550 47087228 AGTACTTGGACTCTCCTGTG 59 NA Rattus norvegicus 81 She ENSRNOG00000020797 ENSRNOT00000028225 1 1 1 80 2 189188476 189188494 AAAGAAGCTGGCTACCTGG 60 189188536 189190634 ACACCCTTGACTAGTCTTGAG 59 NA Rattus norvegicus 81 Bmp3 ENSRNOG00000002381 ENSRNOT00000038872 2 1 1 81 14 12363240 12370207 ATGCCAAAGTCTTTGAAGCC 60 12363178 12363196 CAGGAATCCCAGAGACGAC 60 NA Rattus norvegicus 81 Sil1 ENSRNOG00000019826 ENSRNOT00000026895 3 1 1 80 18 28120735 28132901 GAGTACTATGTCCATCAGATGGA 59 28120677 28120696 GTTGAGCCCATTAATCACCA 58 NA Rattus norvegicus 81 Ceacam11 ENSRNOG00000017620 ENSRNOT00000023686 3 1 1 82 1 79399734 79402688 ACCTCAAAGTAAACAAACCTGG 59 79402731 79402749 CTTCTTCGAGGTCCAGGTC 60 NA Rattus norvegicus 81 Ppef1 ENSRNOG00000027331 ENSRNOT00000058947 1 1 1 80 X 35892337 35892355 GTCTGCAGTTTCCTCTCAC 58 35892399 35897144 AGTGAGCATGAAGTGTCTG 58 NA Rattus norvegicus 81 Ndst3 ENSRNOG00000015781 ENSRNOT00000021335 1 1 1 81 2 227772172 227814647 GTGGTTCTCAACCCAATCAG 59 227772110 227772131 TCACAAATGTGTATGATCCCAG 59 NA Rattus norvegicus 81 AABR07014265.1 ENSRNOG00000042380 ENSRNOT00000065071 3 1 1 86 14 6299137 6299158 CATGTGACCAATGTTGTAAAGC 59 6299203 6299307 ATTCATAGGGCTTTCCTCCAG 60 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000029076,ENSRNOT00000023605 3 2 3 104 2 189437842 189437954 AAGTATGAAGAGGTGGCTCG 60 189439296 189439314 CTCCTCCAGCTCAGAACAC 60 NA Rattus norvegicus 81 Sox14 ENSRNOG00000022084 ENSRNOT00000034277 1 1 1 60 8 108109187 108109205 GACTACAAGTACCGGCCTC 60 108109145 108109166 AGACATACCTGTCTTTCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910729 ENSRNOG00000050714 ENSRNOT00000070885 1 1 1 60 8 62985104 62985125 GGCAAACCATATCGTTTAATCC 58 62985065 62985083 CGATGCGTTTCTCCATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr917 ENSRNOG00000049555 ENSRNOT00000073566 2 1 1 60 4 13645235 13645253 CTCACTACTTCCATTGCCC 58 13645276 13645295 CTTGCCTGTTTCTAAGTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdga1 ENSRNOG00000000536 ENSRNOT00000048845 1 1 1 80 20 8533460 8533479 TTACTACAACTGCACAGCCA 60 8530975 8533417 TTCTTCAAGGATCGCACCA 59 NA Rattus norvegicus 81 Rps6ka3 ENSRNOG00000006632 ENSRNOT00000008938 3 1 1 80 X 37556176 37556195 ACGACAAGGTTATGATGCTG 58 37556236 37562210 AATGGAGTGTAACCAGTAAGC 58 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000061814,ENSRNOT00000086167 3 3 3 80 13 25983911 25990220 CTACTGAAGCTTCCAAAGGA 57 25990261 25990281 CCTTAGAGAACCCTGATTCAG 58 NA Rattus norvegicus 81 Vom1r12 ENSRNOG00000055538 ENSRNOT00000078350 3 1 1 60 1 60406530 60406553 CTGTCTCTTCTATCATGTATGGCT 60 60406493 60406514 AACAACCACCAACTATCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar8a ENSRNOG00000030414 ENSRNOT00000044098 2 1 1 60 1 22403103 22403121 TGTGGTGGCATTTATGGTC 58 22403061 22403081 GAAAGCATCAATCAAGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd2a ENSRNOG00000014008 ENSRNOT00000019080 1 1 1 80 5 140644557 140644575 CTGCTCTTCAAGCTGTACC 58 140643310 140644513 GGCTTCATCTCGTAAAGCC 59 NA Rattus norvegicus 81 Mfsd2a ENSRNOG00000014008 ENSRNOT00000019080 2 1 1 80 5 140646147 140646328 GCTTTCATGCTGGTAGAAGG 59 140646086 140646104 GAGGAGGTTCTGGAACTCG 60 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 1 2 2 80 1 32224229 32225001 ACAGAACAGGATTTGTGCAG 59 32225041 32225062 ACGTAATATTCAAAGTCTGCCG 59 NA Rattus norvegicus 81 AC098125.2 ENSRNOG00000046407 ENSRNOT00000075607 3 1 1 60 1 229783928 229783947 CTGAGCTTCTTGGAGGAGAC 60 229783887 229783905 AAGAACATCTGAGCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdh ENSRNOG00000011342 ENSRNOT00000015353 3 1 1 80 15 46668404 46669334 GACAGGCTATAGCGGAGAG 59 46668342 46668361 CAAAGTCATGTTTCCAGCCC 60 NA Rattus norvegicus 81 Olr128 ENSRNOG00000016052 ENSRNOT00000021468 3 1 1 60 1 168930361 168930383 ATCTGTTACCCACTGAGATACAC 60 168930323 168930341 TGCCAATCTTGCCAATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ephx4 ENSRNOG00000023389 ENSRNOT00000037101 1 1 1 81 14 3363950 3370675 GATTTCAAGGCTTTGAAACACC 59 3363890 3363910 GATCTTCTGTTGTCAGCTGAC 59 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146,ENSRNOT00000085079 2 2 2 145 X 14910101 14910671 TATATGCAAGGCCTTCCAGG 60 14909674 14909692 CTGGTTGGTTCACTGTGAC 59 NA Rattus norvegicus 81 Tle3 ENSRNOG00000013013 ENSRNOT00000018467 2 1 1 80 8 66298163 66298181 TAAATTCACTGTGGCCGAG 58 66298224 66298702 ACTTTGAGGCTGTGATACTG 58 NA Rattus norvegicus 81 Ogn ENSRNOG00000029792 ENSRNOT00000020532 3 1 1 106 17 14616672 14616690 CATTGATGCTGTACCACCA 58 14614017 14616603 TTAAGTTAGGCATGTCTGCA 57 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000085146 3 1 2 137 6 55698701 55698722 CCTTCAATCAATAGCATTCGGA 59 55694612 55695549 GGGTCATCAAATACTGTCTTGTC 60 NA Rattus norvegicus 81 Defb44 ENSRNOG00000038757 ENSRNOT00000059209 1 1 1 80 15 46236452 46237306 TCATTGCCTGAAGGTTACTG 58 46237348 46237367 AAAGCAATAGCCTCCTTCTG 58 NA Rattus norvegicus 81 Slc26a5 ENSRNOG00000011616 ENSRNOT00000015733 3 1 1 80 4 9856346 9856364 ATGAGGAAGTACGCGAAGG 60 9856406 9857352 TCCATCTACTTCTGCATCCAC 60 NA Rattus norvegicus 81 Mir377 ENSRNOG00000035610 ENSRNOT00000053733 2 1 1 73 6 133890701 133890719 GTTGCCCTTGGTGAATTCG 60 133890755 133890774 GCAGGCTTTGATACTCAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp161 ENSRNOG00000016719 ENSRNOT00000022396 3 1 1 152 9 117737827 117739077 GCTGCTTATATCTGGCTTGC 60 117741035 117741055 CAGCGTCTTATGATCATCGTC 59 NA InUTR Rattus norvegicus 81 Msx3 ENSRNOG00000046776 ENSRNOT00000074875 3 1 1 244 1 212517035 212517053 CAACACTCGACATGAACGC 60 212516190 212516208 TTTGTGTTTGCGAAGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100909900 ENSRNOG00000053241 ENSRNOT00000073787 2 1 1 60 3 73653164 73653184 GTCATCATGTCACAGAAAGTC 57 73653124 73653142 AGGCACTGAACAGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plcb2 ENSRNOG00000058337 ENSRNOT00000078037 3 1 1 80 3 110514114 110517090 AGTGGGACGATGAAACCTC 59 110514052 110514076 GATGTGTCCAGTATAAGTAATAGCC 59 NA Rattus norvegicus 81 Frg1l1 ENSRNOG00000000964 ENSRNOT00000001279 1 1 1 60 12 34004526 34004544 TTGTGGGAATCTGGTGGAC 60 34004484 34004502 TCAATGGCAATGGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hexa ENSRNOG00000010252 ENSRNOT00000013747 1 1 1 80 8 64348821 64349015 GCATTTCGTGGTACACCTG 59 64349058 64349077 TGTGCTGTCCACATACTCTC 60 NA Rattus norvegicus 81 Neurod4 ENSRNOG00000008449 ENSRNOT00000011167 2 1 1 86 7 9703190 9711854 CGGGAAAGAGAATCTATAGATGG 58 9703126 9703144 TTGTCCATCCAGGATTGTG 57 NA InUTR Rattus norvegicus 81 Olr130 ENSRNOG00000050164 ENSRNOT00000046616 1 1 1 60 1 169040701 169040720 GTCCAACAACAGTGATGCTC 60 169040660 169040679 GTGAATCATTTCCAAGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr330 ENSRNOG00000029943 ENSRNOT00000051381 2 1 1 60 1 228628622 228628641 ACAGCCATGACCTATGACAG 60 228628660 228628682 TGATTGATGAGTAGAGAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC111616.1 ENSRNOG00000055384 ENSRNOT00000082821 2 1 1 80 17 39277477 39278672 AGGCTCCAGTATGCAACTG 60 39277415 39277433 ACAAGCACAGTTGGTTTGG 59 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000078144 2 1 2 116 1 144596267 144598601 GAAGGAGTAACCACATTTAAGTCAG 60 144596175 144596199 GTAGGTAGTACCAAGATCAATTTCC 59 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000078144 3 1 2 125 1 144596267 144598601 GAAGGAGTAACCACATTTAAGTCAG 60 144596166 144596186 ATCTCGCTTGTAGGTAGTACC 59 NA Rattus norvegicus 81 Sall1 ENSRNOG00000013907 ENSRNOT00000018629 2 1 1 97 19 23402311 23403443 AATCTGAAGGTCCACATGG 57 23403503 23403522 CCTCCTAGAAATGTCATGGG 58 NA Rattus norvegicus 81 Pfdn1 ENSRNOG00000018653 ENSRNOT00000025353 2 1 1 80 18 29286882 29290397 GTTGAAGAAGGCCTTCACAG 59 29286821 29286841 TCAATCTGTATGTCTGCAAGC 59 NA Rattus norvegicus 81 Epb4.1l5 ENSRNOG00000002538 ENSRNOT00000042862,ENSRNOT00000003428 3 2 2 80 13 35647527 35658626 AAGTAGCACATTGGCTGGA 59 35645668 35645689 CTCGAAGATGAAGACAATAGGG 59 NA Rattus norvegicus 81 Ankef1 ENSRNOG00000005792 ENSRNOT00000007893 3 1 1 80 3 129512311 129513386 AATGCTATCAACACATCCACAG 59 129513426 129513445 TATGCCTCGAACTAGTTCCA 58 NA Rattus norvegicus 81 Edn2 ENSRNOG00000009390 ENSRNOT00000012569 3 1 1 91 5 139103747 139105709 AAGCTGAGGGACATCTCAG 59 139105764 139105782 CTCCGTCTAGAGTGTGCAG 60 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000076380,ENSRNOT00000015578 2 3 5 80 7 115821781 115821800 GGTAGATCGACAAGAGGAGG 59 115821843 115823250 TCAAAGTCGGTCATGAGCT 59 NA Rattus norvegicus 81 Sncb ENSRNOG00000018039 ENSRNOT00000024357 3 1 1 92 17 10388658 10388676 GAGGAGCTGTGTTCTCTGG 60 10388732 10391683 CTTCCTCTGGCTTCAGGTC 60 NA Rattus norvegicus 81 Tmem150c ENSRNOG00000002258 ENSRNOT00000003076 3 1 1 82 14 11158090 11158109 GAATATCAGCGGTTTGGTGG 59 11158152 11160651 CTTCATCATTTGTGAGCTGGA 59 NA Rattus norvegicus 81 Mir3576 ENSRNOG00000036488 ENSRNOT00000054596 3 1 1 81 6 133877900 133877920 AGGGCAGTATTTGATACTCGA 59 133877839 133877860 AGGAGAAATTATCCTTGGTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1855.1 ENSRNOG00000051128 ENSRNOT00000076828 1 1 1 81 1 178475075 178475470 GAAGAAGAGACGACCAAGAG 58 178475013 178475031 ATGCACCATTAGGACACAG 58 NA Rattus norvegicus 81 Ppme1 ENSRNOG00000017227 ENSRNOT00000023648 2 1 1 80 1 165346877 165346898 GGAGGAAGAAGATGAAGAAGGA 59 165343875 165346838 GGATGATCCTTCTTGGTTTCC 59 NA Rattus norvegicus 81 RGD1563425 ENSRNOG00000000973 ENSRNOT00000049512 3 1 1 80 12 2025964 2025982 AGCTTGGCTATAGTACCCT 57 2026026 2029923 CCTTGTCATACCTGGAAGG 57 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 3 2 2 88 9 9142232 9142253 CCAGAAGTGTAAATTCGAGAGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Glmp ENSRNOG00000019281 ENSRNOT00000026153 2 1 1 82 2 187700450 187700468 ACTTCTGTGCCTTCAACCT 59 187700514 187700632 AAGCATTGACCAGCAAAGG 59 NA Rattus norvegicus 81 Bpi ENSRNOG00000034195 ENSRNOT00000039994 1 1 1 80 3 154764681 154765370 CCCAAGATCAACGAGAAGC 59 154765411 154765432 GTAAAGAATCGAGTTGATGAGC 58 NA Rattus norvegicus 81 Bpi ENSRNOG00000034195 ENSRNOT00000039994 3 1 1 80 3 154755307 154755327 TACTTCTTCAACACTGCAGAG 58 154755368 154756328 CTTTGCTAACAATTGGTCCC 57 NA Rattus norvegicus 81 Zpld1 ENSRNOG00000039517 ENSRNOT00000060577 1 1 1 80 11 47947188 47947207 TCCCGAGTATAGGATTACCC 58 47947249 47948641 ATACATTCCATCTGCCATCC 58 NA Rattus norvegicus 81 Dph6 ENSRNOG00000037356 ENSRNOT00000056522 2 1 1 80 3 106130822 106133658 CAGATGACAACCAAGTGGA 57 106130760 106130779 CATACAAGTCAATGGCATGG 57 NA Rattus norvegicus 81 Exosc5 ENSRNOG00000020635 ENSRNOT00000028026 2 1 1 80 1 82459954 82461285 TTCTGATGCAGAGCTCCAG 60 82461329 82461347 AGGGATTCTCGGTAGAAGC 59 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 3 3 3 80 8 109511343 109511362 GAGGGAAGAATGAGCTATGC 58 109502105 109511301 ATACTCAATGCTGGTAGGGT 58 NA Rattus norvegicus 81 Lamtor2 ENSRNOG00000019908 ENSRNOT00000026974 2 1 1 127 2 187914461 187914776 AGTCCAAAGTACCCTGCTG 59 187914352 187914370 TCCCGTTCCTATCGTATGC 59 NA Rattus norvegicus 81 Ano7 ENSRNOG00000023427 ENSRNOT00000033233 2 1 1 80 9 100543575 100544167 GTGCTCTTGATGATGGTGG 59 100544211 100544229 CACGATGATAGCCATCACG 59 NA Rattus norvegicus 81 AABR07017624.1 ENSRNOG00000048808 ENSRNOT00000060297 3 1 1 97 15 29369286 29369463 GCAGCTGAACTGTGTAAGC 60 29369207 29369225 TGTAGGTGCAGACGATAGC 59 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863,ENSRNOT00000050393 1 2 2 80 1 188497027 188497046 ACGACCGACTTCAGATTCTC 60 188497086 188498408 CGGCACAATTAATGTAGTCCTG 60 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 2 1 1 65 6 6180545 6180565 AGCTGTATCTTATCTGGACCA 58 6180589 6180612 GCTTTAGAAACCAATTTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gtf3c4 ENSRNOG00000054725 ENSRNOT00000088339 2 1 1 80 3 7412810 7412833 GTAAGGAGATCTTACCATTCACAG 59 7410021 7412771 AGGTTAGAAAGCACCGGAG 59 NA Rattus norvegicus 81 Pask ENSRNOG00000016888 ENSRNOT00000022748 3 1 1 80 9 100451686 100453694 CTGGTTTCCCAAGAACTTATGAG 60 100451628 100451646 CAGCTTCTCCAAAGTGGTC 59 NA Rattus norvegicus 81 Necap1 ENSRNOG00000009236 ENSRNOT00000013272 1 1 1 80 4 155717335 155718018 CACTTCAAGTGGGTAAAGCAG 60 155718059 155718078 GCCTAAATCCAACTTGGGAC 59 NA Rattus norvegicus 81 Prokr1 ENSRNOG00000009556 ENSRNOT00000012913 2 1 1 84 4 119377941 119384243 ATTGACAGGTATCTGGCCA 58 119377875 119377893 ACCACACCAGGAAGATCAG 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000056789,ENSRNOT00000077698,ENSRNOT00000078913 2 3 3 80 2 188141787 188141805 GGATCACACTGTCCCAGAG 60 188141848 188150580 TGCATCTCAAGTTCTCCTCC 60 NA Rattus norvegicus 81 Stard4 ENSRNOG00000020468 ENSRNOT00000027755 1 1 1 80 18 25993214 25993236 AGAACACTCTGATCCAGTATCAC 60 25992035 25993177 TCCAAACGGTTACATCTTTCAC 59 NA Rattus norvegicus 81 Fcnb ENSRNOG00000009342 ENSRNOT00000012494 3 1 1 80 3 6619627 6620405 TTTAACCACCCAGGGAACC 60 6619565 6619584 GAGCTGTACTTGGCAAAGTC 59 NA Rattus norvegicus 81 AABR07069587.1 ENSRNOG00000050165 ENSRNOT00000071210 3 1 1 60 8 32604381 32604400 GAAAGAGGAGAGGTACTTGG 57 32604423 32604441 GGAACGACTCCATGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017789.1 ENSRNOG00000049030 ENSRNOT00000075456 3 1 1 73 15 31097318 31097337 TTACTCCTAGGCCTTCACCT 60 31097508 31097526 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Atp8a2 ENSRNOG00000008053 ENSRNOT00000011451 1 1 1 80 15 40351471 40352033 CTTACTACAGCAAATCCCAGAC 59 40351412 40351433 GCAATCGTTAGAATGATGACCA 59 NA Rattus norvegicus 81 LOC100360679 ENSRNOG00000033152 ENSRNOT00000046010 1 1 1 60 10 104521954 104521975 GACAATACAAGATCCCTGACTG 59 104521915 104521934 TACTTCCCATCCTTCACGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr241 ENSRNOG00000049483 ENSRNOT00000041658 2 1 1 60 1 172130376 172130399 TCATCTATAGCCTGAGAAACAGAG 60 172130418 172130436 ACTCTGACAGTTGCTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Top3b ENSRNOG00000001845 ENSRNOT00000002524 1 1 1 80 11 88352819 88352838 CTATCCCGAGAACTTTGACC 58 88352632 88352776 AACTGCTTTACCGAGTCTG 58 NA Rattus norvegicus 81 LOC317456 ENSRNOG00000003883 ENSRNOT00000005153 2 1 1 114 X 43881280 43881450 GAAACACAGGGCAAATGGT 59 43881524 43881546 CCCTGTCTTATAAAGAAGTCTCC 58 NA Rattus norvegicus 81 Rps27 ENSRNOG00000016961 ENSRNOT00000022897 1 1 1 88 2 189572633 189572652 GCACAAACGGTAGTCTTGTG 60 189572249 189572583 AAGGAGCATCCTTCTGTCAG 60 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 2 2 2 80 11 60084766 60086078 CTGGTTTCACAGGAAAGCC 59 60086121 60086140 AGGCCTATGACATTCTGTCC 59 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 3 2 2 80 11 60074813 60084682 ATCTATGGGAAGGGAAGGAC 58 60084724 60084743 CATCATCCTTGGTAACTGCA 58 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 1 2 2 80 15 42881236 42881255 CTACAGCAACAGCTTCAACC 60 42862945 42881196 GTGATGATCTCCTGGATCTCTG 60 NA Rattus norvegicus 81 Pbsn ENSRNOG00000061715 ENSRNOT00000080431 1 1 1 81 X 45179131 45179152 ACAGAATACATGAACTTCGTGG 59 45178466 45179089 TTGGACAGGTGTCTGTGTC 60 NA Rattus norvegicus 81 Spef1 ENSRNOG00000021247 ENSRNOT00000028861 1 1 1 80 3 123716869 123716889 GGAGATGCACAATTATGTCCC 59 123716299 123716828 TTCAGCACCTTTCTGTTCAG 59 NA Rattus norvegicus 81 Zfp869 ENSRNOG00000033351 ENSRNOT00000015611 3 1 1 80 16 21444665 21446690 AGTCCTGATCAGGGTTTGG 59 21446734 21446752 AGAAGCTTCCAGCAAATCC 58 NA Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 2 2 2 80 2 189725105 189725123 CGAAACCTGGCATTGTACG 60 189725164 189725910 GAACAGAAGAACTTGACTGTGG 60 NA Rattus norvegicus 81 Decr1 ENSRNOG00000008236 ENSRNOT00000011330 3 1 1 80 5 29587231 29587249 TGTGACGTTCGAGATCCTG 60 29586109 29587188 TATCACCACATCAGGATGCC 60 NA Rattus norvegicus 81 Zmym2 ENSRNOG00000008734 ENSRNOT00000011684 1 1 1 80 15 37223678 37224247 CTTCCAGATGGGTCAATATTCTC 59 37224287 37224305 TACTGGAGAGTGGGATCCT 59 NA Rattus norvegicus 81 LOC100912272 ENSRNOG00000050096 ENSRNOT00000070889 1 1 1 60 11 28597924 28597942 CCTTCAGTCTGTTCTCCGA 59 28597882 28597900 GACAGCTAGTTCCTTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910293 ENSRNOG00000048474 ENSRNOT00000073226 1 1 1 60 2 46067118 46067137 CATTCTCACATCAATGGCCT 58 46067157 46067178 GTTATACAAGAGTGGATTGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1530 ENSRNOG00000050245 ENSRNOT00000071470 1 1 1 60 11 43161901 43161919 AGTTCCCACTTGTTCTCTG 57 43161938 43161961 GACTTACATACATGAAGAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpro ENSRNOG00000006231 ENSRNOT00000040576 1 1 1 80 4 171453197 171453216 GAATTTGTGGACATCTTGGG 57 171453259 171459417 GATGTACTGCTCCTCTGTC 57 NA Rattus norvegicus 81 Ctps2 ENSRNOG00000004257 ENSRNOT00000059031 1 1 1 80 X 33468627 33471331 CTTAGCTGATGGTATTCTCGTG 59 33468568 33468586 CTTGCCCAAGAAATTGCCT 59 NA Rattus norvegicus 81 Hoxd4 ENSRNOG00000001578 ENSRNOT00000002145 3 1 1 81 3 61649633 61650206 ATGTGAATTCGGTGAACCC 58 61650251 61650269 TCTAGGACTTGCTGTCTGG 58 NA Rattus norvegicus 81 Gaa ENSRNOG00000047656 ENSRNOT00000075796 2 1 1 80 10 108398519 108398538 TTTCCAAAGGATGTGCTGAC 59 108398576 108400775 GGGATCTTTGATCATAAAGTGGAG 59 NA Rattus norvegicus 81 Esf1 ENSRNOG00000004777 ENSRNOT00000034487 2 1 1 80 3 133217645 133217663 GACATGGACTTTGAAGCCT 58 133212873 133217601 TCCATCTTCACCTTCTGGT 58 NA Rattus norvegicus 81 AC120310.1 ENSRNOG00000045684 ENSRNOT00000071131 2 1 1 80 17 14711345 14711366 GTTGCATTTATGGAGACTTCAC 58 14709558 14711304 TTGAATTCCCAACCAGCTC 58 NA Rattus norvegicus 81 Olr1124 ENSRNOG00000046796 ENSRNOT00000050430 2 1 1 60 8 18795871 18795890 GAGTAATGGCCTATGACCGT 59 18795909 18795931 ATGAGAACTGTATAGCGTAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1265 ENSRNOG00000047572 ENSRNOT00000073159 2 1 1 60 2 46223613 46223634 TTGTGGTCTTTGTTCTAGTTGG 59 46223655 46223673 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560695 ENSRNOG00000028519 ENSRNOT00000029394 1 1 1 60 1 18354407 18354492 GAAAGGATGATGACTCAGAAGTG 59 18354509 18354530 CACGCTTCGATCTCTAAATCTC 59 NA DesignRelaxed Rattus norvegicus 81 Olr221 ENSRNOG00000048930 ENSRNOT00000048699 1 1 1 60 1 170989165 170989183 TCACAGGATCCACAAACCC 60 170989123 170989141 TGAGCAGGTAGATGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgam2 ENSRNOG00000013532 ENSRNOT00000018227 2 1 1 80 14 86045176 86046422 AGCATCTGGAAGGGATGTC 59 86045114 86045134 GGTTCAGCTCATACACAATGG 59 NA Rattus norvegicus 81 Kctd9 ENSRNOG00000012951 ENSRNOT00000017566 2 1 1 80 15 44430392 44430522 CTAGAAGTGGCCATAAAGAATTCC 60 44430558 44430579 CAGCAGAAATCGAACAAATTCC 59 NA Rattus norvegicus 81 Mir325 ENSRNOG00000035627 ENSRNOT00000053750 3 1 1 60 X 76334340 76334359 TTGGTTCCTAGTAGGTGCTC 59 76334299 76334318 AGGAGGTGCTCAATAAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000010399,ENSRNOT00000090849,ENSRNOT00000084308 2 3 3 62 7 18577192 18577210 AAGTGACTTCAAGGGATGG 57 18576711 18577166 CACTCGGTGTATCCAAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Dtnbp1 ENSRNOG00000048719 ENSRNOT00000074600 3 1 1 83 17 20166602 20167630 AGGATTTGACCAAGTTTGCTC 59 20181076 20181094 CTTCCATGGAGGACATGCT 60 NA Rattus norvegicus 81 Tmem79 ENSRNOG00000019414 ENSRNOT00000026414 3 1 1 83 2 187704361 187704379 GTGCTTTCCACCTATCTGC 59 187702399 187704316 GTATATCAGCCGAGATATGGC 58 NA Rattus norvegicus 81 Taar7d ENSRNOG00000045914 ENSRNOT00000051416 1 1 1 60 1 22487639 22487658 GTTCACTGCATCTGTTTCTG 57 22487598 22487618 ATAGATGATAGACAGGAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brcc3 ENSRNOG00000048061 ENSRNOT00000071068 1 1 1 60 9 9865688 9865706 TTCGATCAGAGTCGTCCAC 59 9865646 9865664 CTTCCTCTTGTCAGAACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmbox1 ENSRNOG00000013326 ENSRNOT00000038336 1 1 1 80 15 48208393 48208411 TCGATGTACAGAGTCCAGG 58 48200099 48208349 CTGCAAAGGATGACTGCTC 59 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000079995,ENSRNOT00000068322 3 2 2 82 1 83966348 83966366 GCATTAGTACTGCAGGCAG 59 83966414 83966750 AACACTATGCCATTTCCGTG 59 NA Rattus norvegicus 81 Ifitm2 ENSRNOG00000014936 ENSRNOT00000020216 1 1 1 81 1 213751147 213751165 GGTCCCTGTTCAATACGCT 60 213750533 213751102 CTGTCCCTGGACTTCACAG 60 NA Rattus norvegicus 81 Orc2 ENSRNOG00000012558 ENSRNOT00000051843 1 1 1 80 9 65357277 65357296 TCTTGGACAGTTGTCATCCT 59 65356222 65357234 TGATCCCACATGAGAGGAG 58 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 1 2 2 80 4 176586985 176587090 GAGCTTCAGGTGGTAGTGG 60 176586923 176586944 TGAATGATGGATGACAAACCTC 59 NA Rattus norvegicus 81 Acot13 ENSRNOG00000018415 ENSRNOT00000024878 3 1 1 100 17 42251214 42253379 GAACATAACGTACATGTCACCT 59 42253440 42253458 GATCCACTGAGGCAAATGC 59 NA Rattus norvegicus 81 Brd9 ENSRNOG00000015676 ENSRNOT00000021000 2 1 1 80 1 31967185 31967738 CTCGTCGTACGAAGATTATACAG 59 31967127 31967145 GTCACTTCACTTCCTCCCA 59 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 3 1 1 71 15 4130908 4131040 CAACTCCAGCAAAGAAGGG 59 4131075 4131093 CATCTTCATCCTCATCGCG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1562871 ENSRNOG00000033458 ENSRNOT00000050807 2 1 1 60 X 79547163 79547183 TGAACATAGCAACAGATGTCC 59 79547205 79547223 ATTATGAGGTTTGGCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d3 ENSRNOG00000014037 ENSRNOT00000019167 1 1 1 90 1 189628694 189630453 GCAAATTCACCAGGAAGGAG 59 189628623 189628641 AAGAGGCTAGGGAAACGTG 59 NA Rattus norvegicus 81 Rn60_15_0251.1 ENSRNOG00000051342 ENSRNOT00000076862 3 1 1 60 15 21114229 21114249 CCAGAAATCCTCAACCAACTC 59 21114189 21114209 CTGTGATGTCTACAAATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 3 2 2 80 6 91549328 91549346 GGTTATGGGTACAGGAGGC 60 91549388 91552270 CCAGAATATCTGCTCTTCCCA 59 NA Rattus norvegicus 81 Olr456 ENSRNOG00000061609 ENSRNOT00000092148 3 1 1 60 3 73138970 73138989 TTGTACTATGGCTCCATCCT 58 73139009 73139030 TATCTAAAGAGTAGCTGGACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 1 2 2 80 12 2549755 2549773 GGAGAAGCTGAAGAAACGG 59 2549602 2549711 AATGCTTTCACAATCGCCA 59 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000073492,ENSRNOT00000078688 3 2 2 88 3 151360350 151360848 CAGACTTGGATAGGGAGACAG 59 151360282 151360300 AACTAACACCTGGTCAGCA 59 NA Rattus norvegicus 81 Cep55 ENSRNOG00000016377 ENSRNOT00000022133 2 1 1 80 1 256757082 256757105 CTCTACGATTCTCTGTTAAAGCAC 60 256757142 256757772 TAGAGTACATGCCTGCATCTG 60 NA Rattus norvegicus 81 Slc38a9 ENSRNOG00000009851 ENSRNOT00000013218 2 1 1 80 2 44561968 44564029 CCAAATTTAATATCCTGGGTACGG 60 44564066 44564086 GGAATCCTAAGCGAATAGCCT 60 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939,ENSRNOT00000059494 1 2 2 80 17 43462934 43464278 CATCTTTGGTGGAATTGGCT 59 43464318 43464339 ATAAAGGGATGATTCTGTGGGT 59 NA Rattus norvegicus 81 Eif1ax ENSRNOG00000005736 ENSRNOT00000008509 1 1 1 80 X 37584633 37585470 GATGGGCAAGAATATGCTCAG 59 37585509 37585530 CCTCTTTACACCATCGAAACAC 60 NA Rattus norvegicus 81 Ubn1 ENSRNOG00000003019 ENSRNOT00000061236 2 1 1 80 10 10704565 10705926 TGGCATCTTGCTAGACATAGAG 60 10704506 10704525 GAAGCCAGATAGGCAAACAC 59 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000020648 1 1 2 80 17 15478334 15484033 CTCAACAGGAGAAGAAATGGG 59 15478274 15478296 TATTGGCCGTATACTCTAACTCC 59 NA InUTR Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000020648 3 1 2 80 17 15478335 15484034 TCTCAACAGGAGAAGAAATGG 58 15478275 15478295 ATTGGCCGTATACTCTAACTC 57 NA InUTR Rattus norvegicus 81 Fmo13 ENSRNOG00000043014 ENSRNOT00000066609 2 1 1 82 13 84694075 84694452 TGGAGATATGAGGAGACAACAG 59 84694014 84694032 CTGAAGGCTGTCATCTCCT 59 NA Rattus norvegicus 81 Prop1 ENSRNOG00000003671 ENSRNOT00000004872 3 1 1 105 10 36450248 36451000 GAATCCAGGTCTGGTTCCA 59 36450161 36450179 AAGAAGCCAGAGAAGGTGG 59 NA Rattus norvegicus 81 Cd200r1 ENSRNOG00000039048 ENSRNOT00000002799 2 1 1 109 11 60849576 60850396 ATTGAGGAGGATGAAATGCAG 59 60849487 60849505 TTGACTTTGCCTTGTGACG 59 NA Rattus norvegicus 81 Tldc1 ENSRNOG00000016224 ENSRNOT00000021743 3 1 1 81 19 52409022 52410349 CTCAGAGAAAGATCAGGGCA 59 52408960 52408978 TCCACTGATCTCCAACAGG 59 NA Rattus norvegicus 81 Defb15 ENSRNOG00000048359 ENSRNOT00000058066 3 1 1 72 16 75107886 75107905 CCTTCAGGTCATGAAGACGT 60 75105467 75107851 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Cpn1 ENSRNOG00000013439 ENSRNOT00000018221 3 1 1 80 1 263744265 263747312 AAGCAAGGGAATGCAAGAC 59 263744203 263744222 GGAAACTTGTTGCAACTCAG 58 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800,ENSRNOT00000084826 3 2 2 84 4 7383683 7383701 AGGTGTTGGACATGTACCC 59 7383746 7384020 ATCATGTTGGTATCTCGAAGGT 59 NA Rattus norvegicus 81 Rn60_15_0251.2 ENSRNOG00000051328 ENSRNOT00000077023 3 1 1 60 15 21189545 21189565 AGATGTCCTCAATCAACTCCT 59 21189505 21189526 GGCTGTAATGTCTTCAAATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0038.1 ENSRNOG00000060903 ENSRNOT00000089589 1 1 1 60 20 1666175 1666193 GTGGCTGCTCAATACTCTC 58 1666133 1666156 GAGAAATGTCAGAAAGAAGAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051735.1 ENSRNOG00000031229 ENSRNOT00000050435 1 1 1 60 3 20517843 20517867 CTGAAGACATTGCTACTTACTACTC 59 20517807 20517828 TTTATCACTGTGGGAGGAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018318.1 ENSRNOG00000021823 ENSRNOT00000038845 2 1 1 94 15 51175094 51175112 TCCTTTGTCCAGGACACTG 59 51175017 51175037 AGTGTCCTCATCTTGGAGTC 59 NA Rattus norvegicus 81 LOC100911854 ENSRNOG00000050305 ENSRNOT00000072188 1 1 1 80 1 248728138 248728860 GAGCTATGAGAAAGTGGGTG 58 248728903 248728921 GCATCCTTCTAACACTGCT 58 NA Rattus norvegicus 81 Rnf219 ENSRNOG00000009690 ENSRNOT00000012881 1 1 1 80 15 88659188 88659206 AGAACAACAGCCAATGTCC 58 88656944 88659147 CACTGGTTCCTCCAATAATCTC 59 NA Rattus norvegicus 81 C1qtnf3 ENSRNOG00000018570 ENSRNOT00000025170 3 1 1 80 2 60926866 60926886 GGAGATTATGGATTCCGTGGT 60 60926926 60929409 ATTGTTTCCATGGTTTCCTGG 59 NA Rattus norvegicus 81 Ccdc82 ENSRNOG00000005713 ENSRNOT00000083967,ENSRNOT00000037457 1 2 2 80 8 11909171 11909192 TGGATGATCGCTTTATTCAACC 59 11909232 11911912 CAACCCGCTCCTTATATTGC 59 NA Rattus norvegicus 81 Rn60_15_0609.1 ENSRNOG00000029520 ENSRNOT00000045917 3 1 1 60 15 57187925 57187946 CTAGACGCAAGAAGTGAAAGTG 60 57187886 57187904 AAACTACTGCACCTGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp21 ENSRNOG00000017756 ENSRNOT00000023946 2 1 1 80 1 205748048 205748068 ATCCACTTTGATGACGATGAG 58 205747714 205748008 TTCATGGACAGCTACTTTGAG 58 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 1 2 2 80 12 12726231 12729091 CAGCGAAGGTCTCTAGACTG 60 12726170 12726191 ACACGTTAAGAACGACAAATGG 60 NA Rattus norvegicus 81 Olr1164 ENSRNOG00000030965 ENSRNOT00000047442 1 1 1 60 8 20213673 20213691 TGCTCTGACTCCTCTACCA 59 20213712 20213733 GGAAACCAACAATGATACTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1172 ENSRNOG00000052784 ENSRNOT00000086296 2 1 1 60 8 20442397 20442418 TTACTCACAGATTGTCTCATCC 58 20442358 20442377 GGCTTTGTACTTCCTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc15a1 ENSRNOG00000011598 ENSRNOT00000015890 2 1 1 80 15 106822116 106823668 GGCTGTTGCCCTAATTGTG 60 106822054 106822072 ACTTTGCCCATGATGTTGC 59 NA Rattus norvegicus 81 Olr1186 ENSRNOG00000030613 ENSRNOT00000040199 3 1 1 60 8 20980542 20980563 ACTCTTACTCGCAAATTGTCTC 59 20980579 20980602 CTGTACTTGCTAACTACAGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Soat2 ENSRNOG00000053769 ENSRNOT00000085896 1 1 1 80 7 143766809 143766828 TACATCTTCTGCTTCGTCCT 59 143766871 143767283 GAAGTTCAGCAGACCTCCA 59 NA Rattus norvegicus 81 Acer2 ENSRNOG00000007637 ENSRNOT00000010056 3 1 1 80 5 105243344 105244073 CTAGTTGTAGTGGGAATCGGA 59 105244114 105244133 AATGGCAAGTTCATCAAGCA 59 NA Rattus norvegicus 81 Fbxl12 ENSRNOG00000020368 ENSRNOT00000068308 2 1 1 145 8 21660832 21660850 AAGAGGCTAGTGGATGACC 59 21657983 21658001 CCAGAGAATAGGTAGCCGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 1 2 2 81 3 44081639 44084950 TTTCCAAGAAGGGCATCCA 59 44081576 44081600 GACAATTCTTTCCTTCTGTCTACTC 60 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 2 2 2 80 1 274330905 274333231 GCGAGGAATTGCTAGATTGG 59 274333274 274333292 GTAAACTGGCTTCCTCGAC 58 NA Rattus norvegicus 81 Fem1b ENSRNOG00000007077 ENSRNOT00000009368 3 1 1 149 8 67707931 67707949 TATGTCAGTCAGCAGGGAG 59 67696726 67707819 ATCAATGACATACCCGTCGA 59 NA Rattus norvegicus 81 RGD1303003 ENSRNOG00000001211 ENSRNOT00000001609 1 1 1 170 20 11245270 11246604 AGAAGGAAAGCAGGAACGT 59 11249748 11249766 TAACCTTGCAGTCCTTCCC 59 NA Rattus norvegicus 81 Acox3 ENSRNOG00000008474 ENSRNOT00000049798 3 1 1 80 14 80322275 80327731 TATCTAGCCATGAACCGGT 58 80322213 80322231 CAGGACATTGTTGTCACCT 58 NA Rattus norvegicus 81 Slc22a8 ENSRNOG00000018086 ENSRNOT00000024488 2 1 1 80 1 224817827 224817846 GCCTTCTTTCTGCTTGAGAC 59 224817889 224817993 CTTGACTTGCTTGTGCCAG 60 NA Rattus norvegicus 81 Tshz2 ENSRNOG00000048433 ENSRNOT00000073788 2 1 1 60 3 166744967 166744985 TACAGAAACCTCTCGACCC 58 166745009 166745027 TCTTCCAGGTCCTCCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift57 ENSRNOG00000001958 ENSRNOT00000002684 1 1 1 80 11 53693783 53717225 TATCGCTTGGACACAAACG 59 53693721 53693739 TTCTAGACTCCATTCCGCA 58 NA Rattus norvegicus 81 Olr1743 ENSRNOG00000000765 ENSRNOT00000000992 2 1 1 60 20 1845566 1845584 TGCTCAGATACTGGAGTGG 59 1845524 1845543 CAGTCAGGAAGACAACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 1 3 3 80 2 231058129 231058147 AAATGCTGACCATCAACCC 58 231058189 231058987 CAGTAGAACGTTGACAGATCC 59 NA Rattus norvegicus 81 Pex11g ENSRNOG00000028100 ENSRNOT00000037564 3 1 1 137 12 2003599 2003621 TCTACTATCCTTGTGAGCATGTC 60 2001973 2003502 TTGTCCACAGGGACTTGAC 60 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956,ENSRNOT00000065753 2 2 2 80 7 145088845 145089205 CTTAGTGACATCATTCAGAACC 57 145089244 145089264 GGATAGCGTACTAACAAAGGA 57 NA Rattus norvegicus 81 Parp6 ENSRNOG00000011199 ENSRNOT00000058339 3 1 1 80 8 64463229 64471054 TGGATACTCAGGAATGGGC 59 64471094 64471116 GTGTTCATCCTGTTGTATCTCTG 59 NA Rattus norvegicus 81 Cpm ENSRNOG00000034134 ENSRNOT00000044413 2 1 1 80 7 60654736 60685021 GGTGAGAGGTAGAAACTTGTG 58 60685060 60685081 TATTTGAACTCTGGAATCCCGA 59 NA Rattus norvegicus 81 Cysltr2 ENSRNOG00000015042 ENSRNOT00000020186 1 1 1 60 15 54905802 54905820 CCAGATGCTCCATATCACC 58 54905760 54905780 GACCCATATAATCCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r36 ENSRNOG00000031899 ENSRNOT00000047856 1 1 1 60 1 72183395 72183416 GGTCCTAAGGATCATTGTTCTC 58 72183356 72183377 ATCTAGTCACATGGTTTAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phip ENSRNOG00000008652 ENSRNOT00000011864 2 1 1 80 8 90438317 90439773 GTAGCAAGTATGACAAGATAGCAG 60 90438260 90438280 CAAAGTTATTGGCATCACGGA 59 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667,ENSRNOT00000018014 2 2 2 83 9 65336899 65340275 CTTTGGAGAAGCCTTTGCT 58 65340321 65340340 CTATCATTGTTGCCAGGGAG 59 NA Rattus norvegicus 81 Rn60_20_0038.3 ENSRNOG00000058119 ENSRNOT00000083355 1 1 1 60 20 1695164 1695182 CTTTGCTTCATCACCACCA 58 1695122 1695140 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd11 ENSRNOG00000015669 ENSRNOT00000020970 2 1 1 60 10 56490603 56490623 ACCACTATGAGCTGAGTTCTG 60 56490563 56490581 TCTGTGCAGAAGAGGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a2 ENSRNOG00000001254 ENSRNOT00000001695 2 1 1 80 20 12782378 12782399 GACTCTACTGAGATTGACCAGG 60 12782632 12783370 CTTGTAGCACTCTCCGTAGG 60 NA Rattus norvegicus 81 Pigf ENSRNOG00000015325 ENSRNOT00000020600 3 1 1 81 6 10588666 10588687 TACCTTGTCTGTGTTTGTTAGG 58 10577742 10588626 TCCCAAACAGATGTAACTCCA 59 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000066008 1 1 3 80 11 45888336 45888354 ACCGACTACAAGAAGCGAG 60 45899630 45900828 CACAATGATGGATCTTTCTCAGG 60 NA Rattus norvegicus 81 LOC100362342 ENSRNOG00000050554 ENSRNOT00000073093 3 1 1 86 1 209722691 209722816 CTGAGCTCAATGATTCTGCA 58 209722624 209722643 GGTGACACTTACAGATTCCC 58 NA Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 1 2 2 80 2 52310622 52313173 TATCTACCAACAGGCCACG 59 52313217 52313235 GTCAGATGATGGGACAGGT 59 NA Rattus norvegicus 81 Commd5 ENSRNOG00000050582 ENSRNOT00000075405 1 1 1 60 7 117964146 117964165 CTCTTCTCGACTCTGTAGCC 59 117964187 117964206 CGGAAGTAAGACATGTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500300 ENSRNOG00000023465 ENSRNOT00000018133 3 1 1 80 4 148782617 148783455 TGCTGACTTACAGCAATGAG 58 148783497 148783516 TAGCTCCTCTGAAGTTTCCC 59 NA InUTR Rattus norvegicus 81 Zfand3 ENSRNOG00000059659 ENSRNOT00000085131 2 1 1 97 20 8827142 8827160 ACTTCACCGAGTGAAGAGG 59 8843420 8876263 GACTGTGAATCTGCACCAC 59 NA Rattus norvegicus 81 Tpi1 ENSRNOG00000015290 ENSRNOT00000020647 2 1 1 80 4 157330202 157330221 AAGTTAGACGAAAGGGAAGC 58 157329725 157330160 GTCCTTCACATTATCTGCGA 58 NA Rattus norvegicus 81 Tek ENSRNOG00000008587 ENSRNOT00000032248 1 1 1 80 5 113828129 113828150 GAGGTTCTTTGTAAACTTGGAC 58 113828189 113834519 CAGGTATAAGTAGCCTCTGTG 57 NA Rattus norvegicus 81 Tek ENSRNOG00000008587 ENSRNOT00000032248 2 1 1 80 5 113781703 113784686 CAGTGCAATGAAGCATGTC 58 113784727 113784748 ACACATCTCTTCATTGGTACAG 58 NA Rattus norvegicus 81 Srp68 ENSRNOG00000009351 ENSRNOT00000028875,ENSRNOT00000012436 1 2 2 80 10 105124437 105124824 CTATCCTGGATGCAAATGAGTC 59 105124066 105124084 CAAACCGTTCAACGAGAGG 59 NA Rattus norvegicus 81 Vom1r42 ENSRNOG00000028877 ENSRNOT00000041518 1 1 1 60 1 67301987 67302011 CTCTTACTCATTCTCTTCTGTTCTG 59 67301951 67301969 GAGCACTGGGTATTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r42 ENSRNOG00000028877 ENSRNOT00000041518 2 1 1 60 1 67302175 67302195 TACTGTCCTTCTCTGATGTCC 59 67302135 67302153 ATCATGGAGACACTTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtbdn ENSRNOG00000043215 ENSRNOT00000064289 3 1 1 80 19 26069281 26069300 AGACATAGACAGACCAGAGG 58 26069342 26069485 AAGAATTCACATTCTGGGCT 58 NA Rattus norvegicus 81 Srp54a ENSRNOG00000032776 ENSRNOT00000052076 2 1 1 80 6 76017902 76018453 AACTTCTTGGAATGGGTGAC 58 76018492 76018514 CTATAAGTGCCTCGTTATCATCC 59 NA Rattus norvegicus 81 Noxa1 ENSRNOG00000009286 ENSRNOT00000012375 3 1 1 80 3 2304541 2304559 AGAAGCAATCTCCAAACGG 58 2304292 2304497 AGTGGTACCTGTTTCTGCA 59 NA Rattus norvegicus 81 Rph3al ENSRNOG00000061429 ENSRNOT00000081725 2 1 1 80 10 64046888 64075056 AGACTGCCGGAAGAAAGTC 60 64046826 64046844 ATCTTACACAGCCACAGGG 59 NA Rattus norvegicus 81 Olr1689 ENSRNOG00000046312 ENSRNOT00000072222 2 1 1 60 20 1224617 1224638 GTAATACCTCCAACTCTCAACC 58 1224578 1224602 CACTCTTTATGGTCTCATTTCTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol7 ENSRNOG00000017904 ENSRNOT00000024122 1 1 1 80 17 24019635 24019737 GGACAACTGTGAACAAGTTCC 60 24019778 24019797 TGCTATTCAGAAACTGGGCT 60 NA Rattus norvegicus 81 Olr1352 ENSRNOG00000037404 ENSRNOT00000056602 2 1 1 60 9 99776982 99777002 CTGCTCTTTACTGTCTTCCTC 58 99777024 99777042 TCATGGTGAGGTTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365622 ENSRNOG00000050411 ENSRNOT00000047138 2 1 1 60 3 102580141 102580161 CTCATCAAAGGCACTATCCAC 59 102580182 102580201 CCCAAAGAATAGCACAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000086507 1 1 2 60 3 66416079 66416098 CTTTCCTCTTTCTGCTTGCC 60 66416038 66416059 ATTTGGTCATGTTTCCACTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000086507 2 1 2 60 3 66417446 66417464 TGCACATTCATGGAGTCAG 58 66417404 66417422 GGCAATTACAAGGAGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam114a1l1 ENSRNOG00000002110 ENSRNOT00000002917 2 1 1 60 9 120099865 120099883 AAGGCCATGAAGAAAGCTC 58 120099823 120099841 CATCTATTGACACCACGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fzd7 ENSRNOG00000016119 ENSRNOT00000021569 2 1 1 60 9 66307289 66307307 GGTGGATGGTGACCTACTC 59 66307331 66307349 CAGTGCATCCACACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000074990 1 1 2 80 6 95388210 95388836 TGGAGAGTTCACTAAGACCA 58 95388149 95388167 ACAAGGATTAGCTGCACAC 58 NA Rattus norvegicus 81 Rn60_X_0632.1 ENSRNOG00000051145 ENSRNOT00000076869 2 1 1 60 X 62518961 62518980 GGCTTCAGCAATGTGTTCTC 60 62519001 62519021 AACGCACGGTATAAGTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgalsl ENSRNOG00000005464 ENSRNOT00000008274 2 1 1 81 14 105054353 105054519 TTCCCACGACTGATAGTTCC 59 105054291 105054310 CGATGCCCATCACTAATACC 58 NA Rattus norvegicus 81 Phax ENSRNOG00000014459 ENSRNOT00000019627 3 1 1 80 18 51662409 51664756 CAAATGGCGAAAGTACTAGGTG 60 51664794 51664815 GGAGTCCACATGTTTAACAGTC 59 NA Rattus norvegicus 81 Nppa ENSRNOG00000008176 ENSRNOT00000011005 1 1 1 80 5 164808534 164808552 CTCCCAGGCCATATTGGAG 60 164808593 164808718 GTCTAGCAGGTTCTTGAAATCC 59 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 3 2 2 124 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571935 21571954 TAAGTCCAAGTTTGGCAACC 59 NA Rattus norvegicus 81 Serpine3 ENSRNOG00000009814 ENSRNOT00000051307 3 1 1 86 15 45834491 45834509 GAGATCCTGCAGTTTGCAG 59 45834559 45837364 TCTCACTCTTGGGTCTTGC 59 NA Rattus norvegicus 81 Scn3b ENSRNOG00000057221 ENSRNOT00000087022 3 1 1 80 8 44137281 44145428 ATCTACTGGGTCAGAGTCTG 58 44145471 44145489 CTTCATGGGATTACCCTGC 58 NA Rattus norvegicus 81 Olr484 ENSRNOG00000045807 ENSRNOT00000012959 2 1 1 60 3 73522276 73522294 TTTCTATGGGACACTGCTG 57 73522234 73522257 AGTATCTAGTGAGTGGTTAGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051726.1 ENSRNOG00000046324 ENSRNOT00000075136 2 1 1 60 3 20163395 20163415 CTTTCTCTTGCAGGTCTAGTC 58 20163435 20163455 CACGCTAAATAGGTGTTTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770,ENSRNOT00000058834,ENSRNOT00000058833 3 3 3 80 X 36945102 36945227 GAACAGAAATGGTGGCAGAG 59 36945041 36945064 GTACAGATAGTTTCGTTCATCCTC 59 NA Rattus norvegicus 81 Olr231 ENSRNOG00000019600 ENSRNOT00000026511 2 1 1 60 1 171188302 171188322 AAAGTCCCATGTACTTCTTCC 58 171188342 171188362 ACCAAGTTGAAGCCTATTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 1 2 2 81 1 165676937 165678510 GAGACAGAGCTCCATCCTC 59 165676874 165676892 ATCGTGGTAGTAACCCAGC 59 NA Rattus norvegicus 81 Meis1 ENSRNOG00000004606 ENSRNOT00000006157 2 1 1 85 14 103314092 103314113 GATAGATGATAGAGAAGGCGGA 59 103288808 103314046 TATTCCAAGAGGGCTGGTC 59 NA Rattus norvegicus 81 Mrgprx1 ENSRNOG00000037156 ENSRNOT00000056081 2 1 1 60 1 104023990 104024009 TGACCAGACTGTATGTGACC 59 104023949 104023967 GGAAGACAGCAGATCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk1c10 ENSRNOG00000046297 ENSRNOT00000045756 2 1 1 87 1 99891366 99892238 CCACTGCTATAGCAACTATTACC 59 99891301 99891320 GTTGACAAACCGGTACTGAG 59 NA Rattus norvegicus 81 Ddx1 ENSRNOG00000006652 ENSRNOT00000009100 2 1 1 80 6 38443350 38443368 TTTGGATTTGGCTTCGGTG 59 38442567 38443309 ATGCATAGTGAATTCCTCTCCA 59 NA Rattus norvegicus 81 Sarnp ENSRNOG00000030520 ENSRNOT00000009155 2 1 1 80 7 3295363 3295382 CTGAAGAAACGGAAGGAGAG 58 3295423 3300103 TTTCTTTGCCTCTGTATCCTC 58 NA Rattus norvegicus 81 Il20rb ENSRNOG00000023214 ENSRNOT00000034188 2 1 1 80 8 108758762 108763689 TAATCGGAATGCAACTGTTCTC 59 108758703 108758721 TCTTCCAGCTCAACAACCA 59 NA Rattus norvegicus 81 Pkia ENSRNOG00000012095 ENSRNOT00000016567 2 1 1 89 2 96600312 96600331 CTTGGTTTCCTCTGCAAGTG 60 96596516 96600262 CCATCATCTTCACCTTCTGTC 59 NA Rattus norvegicus 81 Mir551b ENSRNOG00000036429 ENSRNOT00000054541 1 1 1 60 2 116867662 116867682 ATGAAATCAAGCTTGGGTGAG 59 116867704 116867722 TGAAACCAAGTATGGGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir551b ENSRNOG00000036429 ENSRNOT00000054541 3 1 1 60 2 116867661 116867680 CATGAAATCAAGCTTGGGTG 58 116867703 116867721 GAAACCAAGTATGGGTCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc69 ENSRNOG00000021370 ENSRNOT00000039040 2 1 1 80 10 40395615 40395635 GACAAGCCAAGATGAACAAGG 60 40395121 40395573 CAGGGCTCCCATAATCCTG 60 NA Rattus norvegicus 81 Serpinb11 ENSRNOG00000002583 ENSRNOT00000003495 1 1 1 90 13 27247565 27248902 ATTCTTCTGAGTGCAGCCA 59 27248955 27248974 GCAATGCTGAGGGAATTCTG 60 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000077774,ENSRNOT00000086007 2 2 4 92 20 2058450 2058655 CTATAACCAGAGCGATAAAGTCTC 59 2058706 2058724 CTATAGTGCGCTTGGAGGA 59 NA Rattus norvegicus 81 Mir3577 ENSRNOG00000049542 ENSRNOT00000074367 1 1 1 60 10 104340721 104340741 TGGAGGTTTGCTTGTTATAGG 58 104340763 104340781 AGGGACAGATGATGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mycbp ENSRNOG00000017166 ENSRNOT00000023354 2 1 1 85 5 141560487 141564743 CTGACGAAAGTGTTGGTAGC 59 141564986 141565004 GCAGCTCCTAAGTGATGCT 60 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 2 2 2 80 7 116689504 116689523 GGAGGAGAATAAGCAAGTGG 58 116688975 116689462 CTCTTACACCATGCAATGCT 59 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 1 3 9 99 20 2087658 2087969 TTCTGAGCACTTGAAAGCG 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Itpripl2 ENSRNOG00000036762 ENSRNOT00000055106 1 1 1 60 1 188142440 188142458 AGCCAGATCCTTGCAAGAG 60 188142398 188142419 TTCGTGCTCATAGTAACTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Letm1 ENSRNOG00000016427 ENSRNOT00000022540 3 1 1 80 14 82263156 82263174 GAAGTCCCTGACCAAGGAG 59 82263218 82264131 ATCTCCTGCAAGTCCTCAC 59 NA Rattus norvegicus 81 Mir204 ENSRNOG00000035472 ENSRNOT00000053595 3 1 1 61 1 240403037 240403056 TTTGTCATCCTATGCCTGAG 57 240403080 240403098 CAATTGAACGTCCCTTTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0554.1 ENSRNOG00000029005 ENSRNOT00000050742 3 1 1 60 X 55113855 55113876 AGGACCCTTCACTATTAGAGGA 60 55113816 55113834 GTGTTCTTGTGCTGTTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685763 ENSRNOG00000028880 ENSRNOT00000049913 3 1 1 83 X 63915810 63915829 CGAGCCATCAACTTCAAGAG 59 63915875 63915914 ACACTACATTCGGGACCAG 59 NA Rattus norvegicus 81 Hook2 ENSRNOG00000003682 ENSRNOT00000035987 1 1 1 80 19 26118541 26118563 CCCAGAATTCCATACTCTAAGGT 60 26118600 26118688 CTCTTCTCATAGTCCATCTCCA 59 NA Rattus norvegicus 81 Gmppb ENSRNOG00000037229 ENSRNOT00000026854 3 1 1 82 8 116827152 116827171 AGACCATGTGATCCTAGCAG 59 116827216 116827321 GGATTCCAAGCCTTTGCTC 59 NA Rattus norvegicus 81 Gpr82 ENSRNOG00000039762 ENSRNOT00000060992 3 1 1 60 X 9998650 9998669 AGATCTGTGAAGAGACACCT 58 9998609 9998630 ATGGAAGAAAGCAAACTACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552463 ENSRNOG00000019623 ENSRNOT00000046708 1 1 1 60 1 65597869 65597890 AAATACAACACAGTGGTATCCC 59 65597624 65597642 CAACATGTGTCTCTGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 1 2 2 80 3 46305798 46308046 ACACTGTCAGATTCTTCTTGG 58 46308086 46308106 CAAGTCTGTTCCAAATGAACC 58 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045,ENSRNOT00000083102 2 2 2 80 8 55116501 55116520 CTCTACCGGAGGATGAACAG 59 55115160 55116462 GGATTATAATCAGCTGTTCCTCG 59 NA Rattus norvegicus 81 LOC100912585 ENSRNOG00000047907 ENSRNOT00000073706,ENSRNOT00000072970 1 2 2 94 10 49004714 49005084 CAAGTCTCAGGTGGAGGAC 59 49004638 49004656 ATTCCTCCAGGTCAAAGCC 60 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048459 ENSRNOT00000073197 3 1 1 60 2 233909299 233909317 CGTTATGCACCTCTCACCA 60 233909340 233909359 GCTGGCACACTTGTATACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gipr ENSRNOG00000015860 ENSRNOT00000021456 3 1 1 92 1 80070600 80070618 TGGTAGTGATGGCCAATGG 60 80069945 80070545 AAGATCAGCTTCTGGTCCTG 60 NA Rattus norvegicus 81 Spata20 ENSRNOG00000003273 ENSRNOT00000004377 2 1 1 80 10 82208113 82208134 GGATGAGGGATATGATGAGGAG 59 82207689 82208075 AACAGGAAGTTCAGAATCACAG 59 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020073,ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 1 4 4 80 3 8476089 8476346 CAGATCAAGAATTTAGAGCGCA 59 8476385 8476405 CTTCAGTTCCTTTAGCTGCTC 59 NA Rattus norvegicus 81 Ffar3 ENSRNOG00000037467 ENSRNOT00000056714 3 1 1 83 1 89303558 89303804 AACACTCTGCATCTGTGAC 58 89303493 89303511 GGAACACCAACAGATCCAC 59 NA InUTR Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 2 2 2 80 20 13761044 13761357 ATTTACTCAAAGGGCAGCAC 59 13761400 13761418 TTCCGTCTTTGAGGACAGG 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000008371 2 1 4 160 3 63205049 63207745 CAAGAACAAAGGTGTTATCTGG 58 63204910 63204928 CTCATGAGGATGTTGCCTC 58 NA Rattus norvegicus 81 Slc3a2 ENSRNOG00000018487 ENSRNOT00000025196 2 1 1 80 1 224908703 224908721 GCTCTGAGTTCTTGGTTGC 59 224908535 224908659 GTACAAGGATGCATTCGCC 59 NA Rattus norvegicus 81 LOC287167 ENSRNOG00000045989 ENSRNOT00000052292 2 1 1 80 10 15577930 15577948 CATCAAGAAAGCCTGGGTG 59 15577753 15577888 AAGACAATGAACAACCTCCCT 60 NA Rattus norvegicus 81 Arl14epl ENSRNOG00000025590 ENSRNOT00000035656 1 1 1 80 18 40983597 40983616 AACTCTACTCAAGAGGAGCG 59 40983657 40985989 TATCTGTTGCAGTTGCTTCTG 59 NA Rattus norvegicus 81 Tex10 ENSRNOG00000008618 ENSRNOT00000011401 2 1 1 80 5 64205145 64205549 CCAAACAGAGATGCTACAGAG 59 64205085 64205103 CCTAACTGGAAGAAGCAGG 58 NA Rattus norvegicus 81 Il3 ENSRNOG00000026786 ENSRNOT00000031762 3 1 1 80 10 39621113 39622668 AATCTGAGGAATAGTACCTTGC 58 39621054 39621074 TGTGTCCTGAGAATCAAACTC 58 NA Rattus norvegicus 81 LOC682831 ENSRNOG00000050041 ENSRNOT00000071500 3 1 1 60 X 60551989 60552009 TCCTCCACAATATGAGTTCCT 58 60552030 60552049 GGTCATCTTGTTGGTTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alcam ENSRNOG00000001989 ENSRNOT00000002738 1 1 1 80 11 50961570 50964059 GTGTGGATGAAGGATAACATCAG 59 50964098 50964117 GACATAGTTCCCAGCATCCT 59 NA Rattus norvegicus 81 Zfp483 ENSRNOG00000014975 ENSRNOT00000020207 1 1 1 80 5 76092627 76092645 CTGAGAGTAGTGTGGAGGT 58 76092688 76094671 CCTGAGTGTTACGATCTTCC 58 NA Rattus norvegicus 81 Olr303 ENSRNOG00000047015 ENSRNOT00000040258 1 1 1 60 1 213095291 213095311 TTATCACAGTCATCCACAGCA 60 213095251 213095273 TTGACTAGGAAGAAGTACATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642,ENSRNOT00000083851 3 2 2 83 20 12065973 12065991 TTTGCACTTGGACCAAACG 60 12066038 12070282 GCATCTGCCAATACCTGTG 59 NA Rattus norvegicus 81 Lmod3 ENSRNOG00000032443 ENSRNOT00000047453 2 1 1 85 4 129618190 129618210 AGATGAACGAGTTCCTGTCAG 60 129614603 129614621 TGCTTGCAATGCCTTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr514 ENSRNOG00000046997 ENSRNOT00000040055 1 1 1 60 3 73950399 73950422 CCCATGTATTTCTTTCTCAGACAC 60 73950362 73950381 CCACGGCTGTAGAATATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfikkn2 ENSRNOG00000002831 ENSRNOT00000003784 2 1 1 88 10 81939318 81941808 ACAGACCAGGAATGTGAGAC 60 81939249 81939267 TTCACATCCATGTAGCGGG 60 NA Rattus norvegicus 81 Rn60_X_0639.2 ENSRNOG00000051228 ENSRNOT00000077027 1 1 1 60 X 63821066 63821085 TACCTGAAGCCTTCAGTCTG 59 63821108 63821126 TCAGGACTCAAAGACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 1 1 1 60 X 48196972 48210294 GATGGGAGTAGAAGAAATCATACC 59 48210312 48210331 TGTCTGTTGAAGGACATCTG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065750.2 ENSRNOG00000050118 ENSRNOT00000072238 1 1 1 71 6 140102151 140102283 AAAGGTGTCCAGTGTGAGG 60 140102098 140102116 TTTCAGAGACCTTCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892,ENSRNOT00000082192 3 2 2 87 1 188701398 188701416 TGAGGAGGAAATGCACCTG 60 188693842 188701348 TACTGCTGATCGAAGAGCTG 60 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262,ENSRNOT00000084535 2 2 2 80 10 63373242 63374883 CAAACCTTACCACTTTGGGAC 60 63374921 63374943 CTGATATGTTGGGCTTATTGGAG 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 1 2 2 80 8 112872101 112872119 ATCAGCATCTGGAATCCCA 59 112868242 112872058 GTATAGCAACCGATCCTCAG 58 NA Rattus norvegicus 81 Adcy3 ENSRNOG00000003999 ENSRNOT00000005389 3 1 1 80 6 28646886 28646904 CACTAGCCATGAAGGACAC 58 28646948 28647417 CTTTGTTCATGCCTATGCG 58 NA Rattus norvegicus 81 Olr315 ENSRNOG00000045841 ENSRNOT00000045652 3 1 1 60 1 213451745 213451765 GTGACAGAGTTCATCCTTCAG 59 213451782 213451805 CTATGAGGAACAATCTTAGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim13 ENSRNOG00000009075 ENSRNOT00000012035 1 1 1 130 15 41927567 41934487 GGAACAAAGGATGTGATGGA 58 41934579 41934598 TCTAAGAGCCCTTCTAAGCA 58 NA InUTR Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000084560 1 1 3 80 6 29148750 29148768 ATACTCCCTCCTCAGTCAG 57 29148811 29160102 GTTCTTTCCATCTCCTCCAC 58 NA Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 1 2 2 80 15 55419851 55421740 AAAGAATGAAAGTTGGGAGTGG 59 55419792 55419810 TTTAGACAACGGAGAGCCC 59 NA Rattus norvegicus 81 Trim31 ENSRNOG00000021518 ENSRNOT00000061558 3 1 1 80 20 2148997 2150098 GACAGAATTCAAAGACAACCTG 58 2148938 2148959 CTTTCTTCTTTATTCAGGCTGC 58 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307,ENSRNOT00000080013 3 2 2 80 6 6648215 6648235 AGGAGGAGTCATGCTTATCTG 59 6648271 6652248 CTGATCTGATATACACCTTTAGGTC 59 NA Rattus norvegicus 81 Peg3 ENSRNOG00000014791 ENSRNOT00000050180 1 1 1 80 1 70225347 70225366 TGTCAAGACCACATTTCGGA 60 70225409 70228556 ATTCAGCATCCTGGGATCG 60 NA Rattus norvegicus 81 Peg3 ENSRNOG00000014791 ENSRNOT00000050180 2 1 1 80 1 70229437 70229456 CACTCTCACATGACACAAGG 59 70229499 70229626 CATGGGTTTCAGACCTCGA 59 NA Rattus norvegicus 81 Peg3 ENSRNOG00000014791 ENSRNOT00000050180 3 1 1 80 1 70229432 70229450 ACCGACACTCTCACATGAC 60 70229494 70229621 GTTTCAGACCTCGACTGGT 59 NA Rattus norvegicus 81 Ehd4 ENSRNOG00000007584 ENSRNOT00000010701 3 1 1 80 3 111924760 111941596 CACTTTCATCAGATACTTACTGGAG 59 111924704 111924723 GCAATGAAGGAATCTGTGGT 59 NA Rattus norvegicus 81 Mnd1 ENSRNOG00000024733 ENSRNOT00000031179 3 1 1 81 2 183120954 183120975 CAATTACTATTGGGCTTTCCCG 60 183099996 183120916 CTCTGATAGCTGAGAGTTCAGAG 60 NA Rattus norvegicus 81 Tpp1 ENSRNOG00000019212 ENSRNOT00000026280 3 1 1 80 1 170591545 170591563 GCGATATAACCTGACAGCC 58 170591370 170591501 TACTGTTCCAGGAACTGGG 59 NA Rattus norvegicus 81 Msh6 ENSRNOG00000016134 ENSRNOT00000021923 3 1 1 80 6 11658783 11659871 CAGTGCTGGATGTCTTACTG 58 11659914 11659932 GTAACAGAAGTACTGGGCG 58 NA Rattus norvegicus 81 LOC691670 ENSRNOG00000049919 ENSRNOT00000059662 3 1 1 164 15 35164170 35164398 CTATTAAAGCTGAAGAGAAAGGCC 60 35164029 35164048 TTCAGCCTCTTGTAAGAGGG 59 NA Rattus norvegicus 81 Ctsw ENSRNOG00000027096 ENSRNOT00000037404 2 1 1 80 1 220845084 220845178 AAGCTACTGCAGTATTACCAG 58 220845024 220845043 GACAGAATGGTTCACAAGGT 58 NA Rattus norvegicus 81 Nlrc4 ENSRNOG00000005810 ENSRNOT00000007655 1 1 1 85 6 22184310 22186911 CTCTACAGGGACTGATCGG 59 22186960 22186978 ACTGATGTACGCATCCCAG 60 NA Rattus norvegicus 81 Ptprs ENSRNOG00000047247 ENSRNOT00000073991,ENSRNOT00000074469,ENSRNOT00000079999 1 3 3 80 9 10639430 10639448 CACAGACATGGCTGAACAC 59 10639491 10639625 GGGTCGATGGACTCATACTC 60 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 3 2 2 80 3 176095185 176095204 ATGACAGGGTACCGAAACTG 60 176095245 176095813 GTCTTGATCTGTCAAATCCGG 59 NA Rattus norvegicus 81 Gpx3 ENSRNOG00000052564 ENSRNOT00000079830 1 1 1 80 10 40252101 40252121 AGTATGCTGGCAAATACATCC 59 40252164 40253592 GTAGTGCATTCAGTTCAAGGT 59 NA Rattus norvegicus 81 LOC100911822 ENSRNOG00000020799 ENSRNOT00000028222 1 1 1 85 1 88687239 88687337 GCCAGGAATGTAATAACATGCT 59 88687597 88687615 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Fitm2 ENSRNOG00000027434 ENSRNOT00000031904 2 1 1 60 3 159860724 159860742 GCTTCCTGACCTTCATCTG 58 159860682 159860700 AAGTCGTGGAAATAGACGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk13 ENSRNOG00000013620 ENSRNOT00000018431 2 1 1 80 17 49889293 49899574 TATAGCTCAGAAGAAAGCCGT 59 49899615 49899634 TTCTCCCAAGAGCAGTTCAG 60 NA Rattus norvegicus 81 Olr1121 ENSRNOG00000006428 ENSRNOT00000008415 3 1 1 60 8 18719917 18719937 TGTATTCCTGTTTCATCTCCC 58 18719877 18719895 GCACAGAATACCAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909609 ENSRNOG00000018683 ENSRNOT00000054897 3 1 1 80 1 207381405 207381426 GTCCAGCGATTTGAATATTCAC 58 207381467 207385363 CTCGATCCACATATTCGCA 58 NA Rattus norvegicus 81 LOC100911963 ENSRNOG00000049277 ENSRNOT00000028265 1 1 1 112 1 88776033 88776681 AGCCTCAGGACAAGAAGAG 59 88776849 88776867 GAGAAGGAGGAAGGTCAGG 59 NA Rattus norvegicus 81 Gapdh ENSRNOG00000018630 ENSRNOT00000050443 3 1 1 83 4 157676831 157676849 CAACTCCCATTCTTCCACC 58 157676656 157676786 TTGTCATACCAGGAAATGAGC 58 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000067093 1 1 2 80 1 220047523 220047541 CTTTGTACACATGGAGCGG 59 220040137 220047480 CACATCCCACCTTGAAACTC 59 NA Rattus norvegicus 81 RGD1565048 ENSRNOG00000033207 ENSRNOT00000042106 1 1 1 60 14 25585175 25585194 AGACCATTCTCAGCAATCAG 58 25585134 25585152 CCCTTCAGAGTGATGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498154 ENSRNOG00000001289 ENSRNOT00000001734 1 1 1 87 12 17378682 17379506 AGGACAAGGTTCCTGAACAG 60 17379556 17379574 TTCTGCACTGTCAGCTCTC 60 NA Rattus norvegicus 81 LOC100911047 ENSRNOG00000047110 ENSRNOT00000075736 1 1 1 80 1 147043757 147043777 GATCATGGCATCATCTTTCCT 58 147042861 147043715 AGTTTCTGCCTCTGTTCAC 58 NA Rattus norvegicus 81 G3bp1 ENSRNOG00000013186 ENSRNOT00000018149 1 1 1 80 10 40834674 40834693 GAAGAAAGACAGCAGTCACC 59 40834733 40836760 CTCCAAGTCATTGCTAACAGTC 59 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 2 1 1 61 10 13000186 13001430 AAAGCTGACTGAGCATTTGC 60 13001451 13001472 CAAGATTTGCAGACCAGTAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_X_0646.2 ENSRNOG00000051249 ENSRNOT00000075900 2 1 1 60 X 63683467 63683486 TTCACCTCAAAGAAGACCAG 58 63683508 63683527 TTCACAACTTCCTTGACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038567.1 ENSRNOG00000047748 ENSRNOT00000075300 2 1 1 98 X 55332597 55332615 CTCTGGAGCAGAAGATTCC 57 55332677 55332696 ATTGAGTCCTGGATTTCCTG 57 NA DesignNoJunction Rattus norvegicus 81 Clpx ENSRNOG00000030225 ENSRNOT00000048302 2 1 1 80 8 70832174 70832194 ATAAGATTGGCAGTGTACCAG 58 70832233 70834015 GAAGTTTCAGTAAACCTTGCTG 58 NA Rattus norvegicus 81 Clpx ENSRNOG00000030225 ENSRNOT00000048302 3 1 1 81 8 70832173 70832194 GATAAGATTGGCAGTGTACCAG 59 70832233 70834015 GAAGTTTCAGTAAACCTTGCTG 58 NA Rattus norvegicus 81 RGD1561931 ENSRNOG00000021589 ENSRNOT00000035653 2 1 1 61 X 74968375 74968395 AGCTGAGGACTAACTTCAGTC 59 74955705 74968353 TCAAATGTTGTCCAACAGGA 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Ndufaf1 ENSRNOG00000005006 ENSRNOT00000006874 2 1 1 83 3 111459828 111460954 GGAAGTCAAGATTCCTTTCTCC 59 111459766 111459784 TTGTCCAGTATCAGTGGGC 59 NA Rattus norvegicus 81 Cdh7 ENSRNOG00000032490 ENSRNOT00000041413 3 1 1 80 13 31204749 31204768 TTAATGACAATGCTCCCGAG 58 31204811 31205494 TCTGGATAACCTGTCCTGG 58 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000052387 2 2 5 71 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80533705 80536651 GTCGATGATTTCCAGTTCATCTG 60 NA DesignRelaxed Rattus norvegicus 81 AABR07051733.2 ENSRNOG00000057344 ENSRNOT00000050573 1 1 1 60 3 20479978 20479997 CATCCAGATGACACAGTCTC 58 20479937 20479957 GATGGTGACAATTTCTTCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 2 1 1 99 1 264893923 264896003 AAAGGACAGGTTCACAGGT 59 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb6 ENSRNOG00000009340 ENSRNOT00000012364 2 1 1 84 3 21683057 21684072 TTTGCGAGTCGATTGTCAC 59 21682991 21683010 TTCTGTAGGACCACATCTCC 59 NA InUTR Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964,ENSRNOT00000039953 1 2 2 80 4 10456689 10457223 TCAAGAATTCCTAATTGCGTCC 59 10456630 10456649 GAGGAGTAGGGTAAGAGCAG 59 NA Rattus norvegicus 81 LOC100910438 ENSRNOG00000016622 ENSRNOT00000022525 1 1 1 80 X 82412709 82414476 CTCTGTTAGCAAATTCTCTGTC 57 82412650 82412670 CTTGTTCAATACGAGTAGCCA 58 NA Rattus norvegicus 81 Brwd3 ENSRNOG00000002291 ENSRNOT00000050336 2 1 1 80 X 79835566 79835586 CTGAGCCTCATTTATGAACGG 59 79834542 79835525 TTGTTGAGCTACTGGGTGAG 60 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 1 3 3 80 18 39446022 39446042 CATTGGTTATGGTGACATGGT 59 39446083 39463265 CAACCTGCACCCATTATTCC 59 NA Rattus norvegicus 81 AABR07048271.1 ENSRNOG00000033271 ENSRNOT00000047780 3 1 1 87 5 69851383 69860121 CATGTTCCCAGCAGTTTGG 59 69860168 69860190 CATTACCAGAGCATCTTTCTGAG 59 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517,ENSRNOT00000077532 2 2 2 80 9 12639521 12639539 TTTGCCAGATATGGCTCAG 58 12639582 12640073 TGAGACAAATCCATAGCCCT 59 NA Rattus norvegicus 81 AABR07051716.1 ENSRNOG00000060408 ENSRNOT00000075229 1 1 1 60 3 20007360 20007379 ACTTTAGAATCTGGTGTCCC 57 20007400 20007420 GAGAATAATCTGTCCCAGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000034372,ENSRNOT00000081061 3 3 4 80 X 53416261 53418680 TATGATACGGGACGAACAGG 59 53418721 53418741 TTCCAAGTGTGCTTTACACAG 59 NA Rattus norvegicus 81 RGD1561276 ENSRNOG00000047700 ENSRNOT00000041791 3 1 1 60 3 102664634 102664655 GGCTGCTTTACACAGATATTCC 60 102664675 102664694 CAAGGGTTACCATCTCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbil5 ENSRNOG00000007771 ENSRNOT00000010227 1 1 1 80 10 64376032 64376501 CCGTCTACTCACAGTACCA 58 64376545 64376563 TTCAAACTCCACTTGGCTC 58 NA InUTR Rattus norvegicus 81 Kcnk15 ENSRNOG00000010816 ENSRNOT00000014411 1 1 1 84 3 160232243 160232261 TTCTACTTCGCCATCACGG 60 160236143 160236161 ACATGCAGAACACTTTGCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100360449 ENSRNOG00000030476 ENSRNOT00000042201 3 1 1 60 3 4282471 4282489 ACATGATCAAGGGTGTGAC 58 4282513 4282531 AAGTGAGCATACACAGACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564148 ENSRNOG00000004092 ENSRNOT00000005433 1 1 1 60 10 55222695 55222714 GCATGAGAAACCTGACTGAG 59 55222654 55222672 ATGACTTTGCCATTTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc39a13 ENSRNOG00000011981 ENSRNOT00000016191 2 1 1 80 3 79888492 79890533 GTTACAATCAGAAGCTGGAGC 59 79888432 79888450 AGAAACACATTGCCCAGGA 60 NA Rattus norvegicus 81 Ncald ENSRNOG00000042978 ENSRNOT00000064513,ENSRNOT00000080024 3 2 2 80 7 76229180 76229199 AGCATGTATGACCTGGATGG 60 76205501 76229139 GACCATCTTGTAGATTGCCTG 59 NA Rattus norvegicus 81 Adcy2 ENSRNOG00000032150 ENSRNOT00000047627 1 1 1 80 1 37515100 37515120 TCCCTATATCACTCCCTAACC 58 37515161 37516595 CCCTCACTTTCTTTATGGCT 58 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000076276 3 1 3 81 14 60069714 60069732 GGCTTCATCTCTATGGTCG 58 60060090 60069670 GCTCCTTCTGGTATTCTTCC 58 NA Rattus norvegicus 81 Olr1521 ENSRNOG00000030521 ENSRNOT00000040681 1 1 1 60 10 75187006 75187024 TTAATGCTCCCATTGCCCT 59 75186964 75186986 GGACATCACAGTAGAAGTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Furin ENSRNOG00000011352 ENSRNOT00000015521 3 1 1 81 1 142191757 142192450 AGATGAATGACAACAGGCAC 59 142191695 142191713 ACACCTACACCACAGACAC 59 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282,ENSRNOT00000066823 2 2 2 80 1 224936294 224936315 GGACCAAGATATACAGTTCCTC 58 224936354 224937347 GGATCATAGATTCTGACCTGG 58 NA Rattus norvegicus 81 Ccdc152 ENSRNOG00000039473 ENSRNOT00000060492 1 1 1 80 2 53116412 53117302 ACAGAAGGAAGCTTCAGCA 59 53116350 53116369 GCTCTAGGTCTCGGATAGTG 59 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000074007 1 1 2 80 10 94193709 94193729 TGAAGACAGCATACGGTAGAG 59 94193770 94193899 TGATTTCTTCGAGGTCAGGT 59 NA Rattus norvegicus 81 RGD1309779 ENSRNOG00000008340 ENSRNOT00000066106 1 1 1 80 8 68308521 68312547 GTCATCAACATGGGTATTCCA 58 68308461 68308481 GGTATGAACAGTCTCTGTGAC 58 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 2 2 2 80 11 64837651 64837671 GTTCAAAGGTACGAAGGAGGA 60 64834628 64837609 GGTAGGGAAGTCAGCTCTG 59 NA Rattus norvegicus 81 Tnfsf11 ENSRNOG00000009559 ENSRNOT00000013210 2 1 1 81 15 62089192 62089211 ACAGAAGCACTACCTGACTC 59 62073579 62089151 CCACAATGTGTTGTAATTCCCT 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 3 1 2 108 2 235311999 235312017 GCCAGTACAAGTGTAGCGA 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Olr1274 ENSRNOG00000047291 ENSRNOT00000073665 1 1 1 60 8 43043651 43043670 CTATGATCGCTATGTTGCCA 58 43043610 43043631 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1257 ENSRNOG00000045625 ENSRNOT00000072172 3 1 1 60 8 42430210 42430228 GATTCAAAGCCTTCAGCAC 57 42430168 42430189 GAACCAAAGAAGACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb1bp1 ENSRNOG00000059402 ENSRNOT00000092192 3 1 1 80 6 43354543 43356920 CAAAGAGCAAGTCTGTGGA 58 43354481 43354500 TAGTGGAGTCTGTATCGAGG 58 NA Rattus norvegicus 81 Olr383 ENSRNOG00000050605 ENSRNOT00000040049 3 1 1 60 1 230765664 230765682 GGTGGTTATCCCTATGCTG 57 230765622 230765641 CTCCTTCACTTCCTTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem235 ENSRNOG00000048231 ENSRNOT00000074369 1 1 1 90 10 106869494 106869512 TATATCCTGGAGGTGGCAG 58 106869566 106871546 TGTTCTGTCCTTCACAGGT 59 NA Rattus norvegicus 81 Zfp36 ENSRNOG00000058388 ENSRNOT00000090129 1 1 1 81 1 85380162 85380851 TCTACGAGAGCCTTATGTCG 59 85380895 85380913 ATGTTCCAAAGTCCTCCGG 60 NA Rattus norvegicus 81 Olr245 ENSRNOG00000030215 ENSRNOT00000043135 2 1 1 60 1 172243213 172243231 CAACCTGTTCCTCTCACCT 59 172243254 172243273 TAGACAAAGCAGGCAAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 1 2 2 80 8 114321620 114321638 CTGACGTCTACTGCAAGCT 60 114321679 114323291 AGACAAGCTTCCTTTCAATCTG 59 NA Rattus norvegicus 81 Ankrd52 ENSRNOG00000030597 ENSRNOT00000047462 2 1 1 80 7 2808854 2809204 TGAAGAAGGTCACACTCCAG 59 2809247 2809265 ATGGTGGAGAGGATCAAGG 59 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000050061 ENSRNOT00000071116 2 1 1 84 5 60946554 60952076 GTTGATGTCACAGGCTAAGTC 59 60946490 60946508 GGAGGCCTCTTGTCATGAG 60 NA InUTR Rattus norvegicus 81 Kank3 ENSRNOG00000007230 ENSRNOT00000009532 2 1 1 80 7 18677200 18677218 TACTCCAGGTGCACAATCC 59 18677261 18677457 GAGGAGCTCTCATACTCTCC 59 NA Rattus norvegicus 81 Kank3 ENSRNOG00000007230 ENSRNOT00000009532 3 1 1 81 7 18677574 18677592 CCCACAATGACCAAGATGC 59 18677637 18677749 AGTTCACACCTCCCTTCTC 59 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 3 2 2 80 15 103244247 103244266 CTTCGAAATCAGGATGACCG 59 103235742 103244204 ACCAGCAAAGTTTCCTGTG 59 NA Rattus norvegicus 81 Ppp1r26 ENSRNOG00000027193 ENSRNOT00000036601 2 1 1 60 3 7036038 7036059 GGTCTGTGGATAAGAAATCAGG 59 7036078 7036098 TCTCGGTTTCCTCTAAGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Utf1 ENSRNOG00000050207 ENSRNOT00000075049 1 1 1 217 1 212281640 212281658 CCCTTCGATGACCAGATCC 60 212281936 212281954 GAAGAGCTGAATCTGAGCG 58 NA DesignNoJunction Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975 3 1 2 120 14 75852242 75880311 ACGCGACTCAGTAATTGGA 59 75880395 75880413 TCATGCTGTACAGCTCAGG 60 NA InUTR Rattus norvegicus 81 B3gnt3 ENSRNOG00000018764 ENSRNOT00000025363 1 1 1 109 16 20125453 20125619 CTGACACTTAAGCAGGTCCT 60 20125363 20125381 ACCATGTTGTCCGTATGGG 60 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000066523 2 1 2 82 10 103545483 103546090 GAACCTTCAGCCAGATCCA 59 103546135 103546154 CATATTGGCACTGCACTGTC 60 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075884 1 1 4 82 15 37825097 37825115 AGAAGCAAACCATCAACCC 58 37822841 37825054 TGTATGTGGTAGGTTTATCCAG 57 NA Rattus norvegicus 81 Gnl2 ENSRNOG00000009430 ENSRNOT00000012702 2 1 1 80 5 143052176 143052195 CAAGGAAGTGGAATGCACAG 60 143052237 143053239 CTCTCCTCCGTTCCTTACAC 60 NA Rattus norvegicus 81 Purb ENSRNOG00000056150 ENSRNOT00000078282 1 1 1 60 14 86738920 86738939 CTTAAGAGCGAGTTCCTGGT 60 86738879 86738897 GGTTCTCCTTGAGGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrps7 ENSRNOG00000003797 ENSRNOT00000005089 1 1 1 80 10 104157826 104158364 GTCATTTCTACCAGGTCCCT 59 104158407 104158425 GGCACTCTGTGATCATCCA 60 NA Rattus norvegicus 81 RGD1306746 ENSRNOG00000017380 ENSRNOT00000023654 3 1 1 80 4 118253180 118255463 GAAGAATGAAATGTCTGGTGC 58 118255504 118255523 CCACTCTTCCTTAGATTGCT 57 NA Rattus norvegicus 81 Zswim4 ENSRNOG00000007582 ENSRNOT00000010050 3 1 1 87 19 25327763 25329273 GCTGCCAAAGGAGATACCA 60 25327694 25327712 CCAACTTGAAGAGCAGAGC 59 NA Rattus norvegicus 81 Acsf2 ENSRNOG00000003330 ENSRNOT00000004673 3 1 1 80 10 82299273 82300176 GAATATGTCCTCAGAAAGGTAGG 58 82299215 82299235 CAGGATGTTGTAGTACTGCTG 59 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000006466 ENSRNOT00000008523 2 1 1 85 4 82257234 82258211 TAGTCACGACAACATAGGTGG 60 82257169 82257188 ATTCTTTCTCCAGCTCCAGG 60 NA Rattus norvegicus 81 Fbf1 ENSRNOG00000008577 ENSRNOT00000011560 1 1 1 80 10 104706137 104706155 TTCCCACTAAGAAGCCACC 59 104705245 104706095 GGTCCTCAAAGTCTTCAAAGG 59 NA Rattus norvegicus 81 Olr1325 ENSRNOG00000061476 ENSRNOT00000084016 2 1 1 60 8 43722627 43722649 GTTGTCATGTCTCATCATCTCTG 59 43722666 43722687 TAACACCCAAAGTGTAAACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 3 2 2 101 14 107792116 107794197 TCTTCTAGTTCTGCATCGGA 58 107794261 107794279 AGTTGTGGACAAGGAGGAC 59 NA Rattus norvegicus 81 Dnajb6 ENSRNOG00000010353 ENSRNOT00000035996 1 1 1 97 4 2724664 2724684 GGCATATGAAGTGTTATCGGA 58 2726083 2727197 AATGACTTCCACCTCCTCC 59 NA Rattus norvegicus 81 AABR07029675.1 ENSRNOG00000030600 ENSRNOT00000048241 2 1 1 85 10 44632773 44632793 AGCATACAGTCCTGAGTGG 59 44632842 44632860 TACAACAACCAACACCCGA 60 NA Rattus norvegicus 81 Supt16h ENSRNOG00000011953 ENSRNOT00000016288 1 1 1 80 15 28584529 28584548 TTACAGCAAGAAAGTCACGA 58 28578711 28584487 TCACAGGAATTTAGCCACTC 58 NA Rattus norvegicus 81 Daw1 ENSRNOG00000016247 ENSRNOT00000068236 2 1 1 80 9 88992362 88992381 ACGATGAGATCCTAGACAGC 59 88992423 88996674 AAACTCTTGCTGTTCCATCG 59 NA Rattus norvegicus 81 RGD1310587 ENSRNOG00000002322 ENSRNOT00000003177 2 1 1 60 13 102783264 102790321 AAGAAGTACGGCAAGAATGTC 59 102783224 102783242 CAATGACAATGTACCGGCA 59 NA DesignRelaxed Rattus norvegicus 81 Commd7 ENSRNOG00000010538 ENSRNOT00000014038 2 1 1 81 3 149103724 149103997 GTTTGGAGTGACGTCTGGA 60 149102458 149102477 TCCTTTCTTAACCACCAGCT 59 NA Rattus norvegicus 81 Lrrc36 ENSRNOG00000016854 ENSRNOT00000022622 3 1 1 80 19 37403355 37406877 AGGAAGATGGATTGGAACTC 57 37406917 37406938 ATCCATCTCTTGTCATCTTCTC 58 NA Rattus norvegicus 81 Nufip2 ENSRNOG00000024964 ENSRNOT00000030501 2 1 1 186 10 65199981 65200000 ATTTCTACAACCACAGCCAC 59 65195156 65199835 CCATTTATTTCACCATAGCCTG 58 NA Rattus norvegicus 81 Pde3a ENSRNOG00000025042 ENSRNOT00000032843 2 1 1 80 4 175661797 175661815 TTCACTTCGTCCTATGCTG 57 175661858 175668667 AATCTTATCAAGGCCACCTG 58 NA Rattus norvegicus 81 Acrbp ENSRNOG00000017399 ENSRNOT00000024618 2 1 1 80 4 157564670 157564884 GATTGGTACCAGATGGTGCT 60 157564926 157564945 GATACTGAGCAAACTGGCAG 59 NA Rattus norvegicus 81 Mrpl38 ENSRNOG00000008256 ENSRNOT00000011328 2 1 1 87 10 104685045 104685177 CATCAACTTGGACGGACAC 59 104683294 104683313 TTCAGCTACCCTATTGCTGG 60 NA Rattus norvegicus 81 Rn60_13_0803.2 ENSRNOG00000051246 ENSRNOT00000076447 3 1 1 60 13 75368045 75368064 CACCATCAACAAGAATGCTG 58 75368085 75368105 GTTCTTTCAGATCATGTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 1 2 2 80 1 101843999 101844017 TCTACCTGGTTACCAACGG 59 101843371 101843956 GCTGATAGAACACCTCACCA 60 NA Rattus norvegicus 81 Prdm6 ENSRNOG00000030486 ENSRNOT00000047755 2 1 1 80 18 48505152 48508588 CAGTAGTTCAGTACAGGTCGA 59 48508630 48508648 TGTACCACACCAGAAGCTC 59 NA Rattus norvegicus 81 LOC100363452 ENSRNOG00000021395 ENSRNOT00000037551 3 1 1 60 3 103192935 103192956 CTACAATGCATCCAATAACGAG 58 103192976 103192995 CACAATGCAGTTCTTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptp4a3 ENSRNOG00000007628 ENSRNOT00000010224 1 1 1 85 7 115001764 115002474 CAGTTCATCCGACAGAAGC 59 115002523 115002541 CTCAGTCTCTGCTTAGGCC 60 NA Rattus norvegicus 81 Pcdh12 ENSRNOG00000019265 ENSRNOT00000026065 3 1 1 80 18 31424742 31427905 TCCTGTTCAGCAAATCTCC 58 31424680 31424699 TTATTTCCTCGGTGGTTTGG 58 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 2 2 3 80 14 22732531 22733646 AATTCCACAGAAGGTTGTATGG 59 22733687 22733705 ATCCACTTGTACAGCCGAG 60 NA Rattus norvegicus 81 LOC100910150 ENSRNOG00000033015 ENSRNOT00000040657 2 1 1 81 18 52465341 52465361 AGATATCAACCGAGCATACCA 59 52465404 52487502 CAAAGGAGCAAGAACCAGC 60 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346,ENSRNOT00000004524 2 2 2 80 10 107520431 107521501 TACAGTGACAGTTATGGTAGAGTC 60 107520374 107520392 GATGCTGTAGGTTGCTGTG 59 NA Rattus norvegicus 81 Specc1l ENSRNOG00000001303 ENSRNOT00000001764 2 1 1 80 20 14319216 14319237 GAGAATACGGAGGATCTAAGAG 57 14292462 14319178 TGATGTCGATATTCTGATAGCC 58 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 2 3 3 162 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606139 116606392 GAATGATCCTTCCTGCTGC 59 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 3 2 2 80 8 68444763 68454430 TATCAATAACAGCCTCCTTTCC 58 68444704 68444724 TCTGTTTCTGTTGAGACTCCT 59 NA Rattus norvegicus 81 Kdelr1 ENSRNOG00000021082 ENSRNOT00000028627 2 1 1 80 1 101860266 101860461 CAATACCTGCATGAAGGTGG 59 101860502 101860522 TACGTAGCTTTGAACTTGCTG 59 NA Rattus norvegicus 81 Pxt1 ENSRNOG00000000516 ENSRNOT00000000623 1 1 1 78 20 6193187 6194111 CACAGGATGATTCAAGAGCA 58 6193128 6193146 CTCTCATGAACATGAGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_0814.27 ENSRNOG00000051357 ENSRNOT00000076970 2 1 1 85 5 77403036 77403762 ACTTGATGGGAAATCAAGATCC 59 77402972 77402990 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Gper1 ENSRNOG00000001287 ENSRNOT00000001732 1 1 1 60 12 17310856 17310875 TACACCATCTTCCTCTTCCC 59 17310815 17310833 TGTTCACCACCAAGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680161 ENSRNOG00000028826 ENSRNOT00000047694 1 1 1 60 4 147121320 147121338 CCTGGGTCCTAAGTCTGTG 59 147121278 147121297 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col1a1 ENSRNOG00000003897 ENSRNOT00000005311 3 1 1 80 10 82747575 82747594 AAGAAGACTTGGACTGTCCC 59 82747633 82747776 CTGGTGATACATATTCTTCTGGG 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 3 4 4 80 1 24189653 24189673 CAGAAGAAGCATTCTATGCCG 60 24189482 24189615 CTGACATAATATGCTTCTCCTCC 59 NA Rattus norvegicus 81 Kctd13 ENSRNOG00000020010 ENSRNOT00000027129 2 1 1 104 1 198374456 198375473 ACTCCTATACCAGCACTTCAG 59 198375539 198375557 GGACGTCCTTGAGGAAGAG 60 NA Rattus norvegicus 81 Hdac4 ENSRNOG00000020372 ENSRNOT00000027622 3 1 1 80 9 99081735 99083983 CTCATTGTAGACTGGGATGTG 58 99081675 99081695 GGACATGTAGAGAACATTGGG 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 1 2 2 80 13 41720267 41722195 TCATCCCATCATGTATTGCCA 60 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Gtpbp4 ENSRNOG00000016217 ENSRNOT00000074389 3 1 1 80 17 63139277 63139297 TTCAGCCCTATGCATTTACCA 60 63124688 63139235 TATCTACAACCTGCCAGCG 60 NA Rattus norvegicus 81 Bcap29 ENSRNOG00000007884 ENSRNOT00000010631 3 1 1 80 6 50923450 50923468 TGCCAGCTTTCTTTATGCC 59 50920038 50923407 ATCTTGTGCCATCTCTGAGG 60 NA Rattus norvegicus 81 Rn60_X_0655.1 ENSRNOG00000051282 ENSRNOT00000076575 3 1 1 60 X 64528355 64528374 TATGAGCTGTTGAAGAGCCA 59 64528314 64528332 AAGCTGATGCCCATAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpbgl ENSRNOG00000017922 ENSRNOT00000024157 2 1 1 61 1 164589623 164589642 AGCCTCTTACGTCTTCTTCG 60 164589581 164589599 GCACCATGAGGAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mterf ENSRNOG00000007899 ENSRNOT00000010425 1 1 1 191 4 27365450 27366897 GCTGTACCGTTGGATTTCTC 59 27371118 27371137 CCAGATGTTTCTTGATGCCA 59 NA InUTR Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 3 3 4 80 10 67594740 67602002 GAGGAGAAAGAGATGAAACCAG 59 67602041 67602061 AGTGCCATCATTATCTTGGTC 58 NA Rattus norvegicus 81 Sumf1 ENSRNOG00000006813 ENSRNOT00000009008 3 1 1 80 4 140204682 140220224 CTCGCTCTCACTAAGATGGT 59 140204621 140204640 TCCATCCTGCTTGATCTGAG 59 NA Rattus norvegicus 81 Zbtb20 ENSRNOG00000056716 ENSRNOT00000081443 1 1 1 80 11 62018511 62026229 TACATACAGGTGAGAAGCCC 59 62018450 62018472 CCATGTGCTTGATAAGGTAATCC 60 NA Rattus norvegicus 81 Zbtb20 ENSRNOG00000056716 ENSRNOT00000081443 3 1 1 81 11 62018517 62026237 CATGTTCGTACATACAGGTGAG 59 62018457 62018481 CTTGATAAGGTAATCCTTCAAGGAG 59 NA Rattus norvegicus 81 Papolg ENSRNOG00000006261 ENSRNOT00000008919 1 1 1 80 14 108646331 108649611 AGTGAAAGTAAGAATCTCCCAC 58 108646272 108646290 TCCAAGCCTGTAAGATCCA 58 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 3 3 3 84 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752005 50754084 GTCCCATTGATCTTCTCTATGC 59 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428,ENSRNOT00000088928 2 2 2 80 15 51234089 51235083 AATTTCAAAGGTACTTGGCCC 59 51235124 51235143 CCACAATGCCATAGTTCACG 60 NA Rattus norvegicus 81 rno-mir-344a-1 ENSRNOG00000049433 ENSRNOT00000053681 2 1 1 60 1 122373321 122373339 TGGCTAGATTCCAGGTACC 58 122373279 122373297 TTACAGCTTACAGTCAGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpys ENSRNOG00000004298 ENSRNOT00000006004 3 1 1 80 7 78830217 78830236 CTCTATACATCGTGCACGTG 59 78817164 78830176 CATAGACCACCTTTCCTTCTC 58 NA Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 2 2 2 81 13 47908018 47914851 AGGCTAAATATTACCACTGAGC 58 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Ralyl ENSRNOG00000011400 ENSRNOT00000015195 1 1 1 81 2 89223402 89223420 AAGCCTGGAAGTAAGAGGC 59 89127473 89190923 AATCAAACAGCCCAACAGAC 59 NA Rattus norvegicus 81 Btk ENSRNOG00000052407 ENSRNOT00000077547 2 1 1 80 X 105368344 105368365 CCATCAAGATGATCAGAGAAGG 58 105367765 105368306 CATGGGAAAGATTCATCATGAC 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000084632 3 3 5 117 X 63806052 63806223 ATCAAGCGCTCAGAAATGC 59 63805804 63805823 TTTCCTTGAGCTGGATTCCA 59 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927,ENSRNOT00000080364 2 2 2 83 12 18117995 18118014 GAGTTGATCTCCAAGTTGGA 57 18108402 18117949 TTTATGGACATCTGGCAGG 57 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927,ENSRNOT00000080364 3 2 2 84 12 18117996 18118015 TGAGTTGATCTCCAAGTTGG 58 18108402 18117949 TTTATGGACATCTGGCAGG 57 NA Rattus norvegicus 81 LOC100909487 ENSRNOG00000042748 ENSRNOT00000066360 3 1 1 86 4 82215067 82215251 ATTTGGAGACCCACCTCAG 59 82215301 82215319 CCAACATGAGTTACACCGG 59 NA InUTR Rattus norvegicus 81 Cmtr2 ENSRNOG00000017102 ENSRNOT00000022952 1 1 1 60 19 41428861 41428880 CCAAATCCTTTCTTGAGCGA 59 41428820 41428844 TCTAACTGGTATCTATGGAAGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000045495,ENSRNOT00000081386,ENSRNOT00000067422 1 4 4 80 7 143125335 143125356 GATCAAGGCTCAGTATGATGAC 59 143125397 143125649 ATCTCCTCACACTTGGTGC 60 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000088687 2 1 2 82 6 39362125 39363157 AAATCACGGATCTCAGTTCCT 59 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA InUTR Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000076786 3 1 2 83 2 30666585 30666604 ACACTAGGCAAAGAACTTGC 59 30666650 30667400 ATCCGGTGATCAGACTTCC 59 NA InUTR Rattus norvegicus 81 Hoxb7 ENSRNOG00000007611 ENSRNOT00000031035 1 1 1 141 10 84135515 84135533 CTTTGAGCAGAACCTCTCC 58 84135638 84137862 CTTTCGTTCAGTCCCTGAG 58 NA Rattus norvegicus 81 Hoxb7 ENSRNOG00000007611 ENSRNOT00000031035 3 1 1 166 10 84135490 84135508 GTTCCTTCAACATGCACTG 57 84135638 84137862 CTTTCGTTCAGTCCCTGAG 58 NA Rattus norvegicus 81 Fzd9 ENSRNOG00000001452 ENSRNOT00000001973 1 1 1 60 12 24474993 24475011 CACCGATTCCAGTACCCAG 60 24475032 24475053 AGTAGACATTGTAGCACATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akirin2 ENSRNOG00000008288 ENSRNOT00000010962 1 1 1 80 5 50013031 50013049 AGACCCAGGTTGTAGTTCC 59 50013093 50014760 GTTGCAGATGAAGTCCCTG 59 NA Rattus norvegicus 81 Akirin2 ENSRNOG00000008288 ENSRNOT00000010962 3 1 1 81 5 50014829 50014848 TGTTGAAAGAACGGGAAGAG 58 50014891 50015611 AATGCATCGTATTGTTCTGC 57 NA Rattus norvegicus 81 Fam109a ENSRNOG00000028206 ENSRNOT00000030600 3 1 1 77 12 40227213 40227231 TTCCTGTACAAACGTGGTG 58 40227154 40227173 GTAGAAGAGTATGTTGCCGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911631 ENSRNOG00000025247 ENSRNOT00000034771 1 1 1 60 1 220097970 220097988 CGCTGATCGTCTTATTGGG 59 220098011 220098030 GACTCGGCTTATCAATTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fut4 ENSRNOG00000009157 ENSRNOT00000012176 3 1 1 60 8 13261273 13261293 ATGTGGATGATTTCCCTAGTG 58 13261233 13261251 TTTCGGTCCAGAAAGAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 3 1 1 64 2 115362914 115363888 GCAGAAAGACAAGAAGCCT 58 115363914 115363934 CTACTGGATGAGTAAGGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Mrps18c ENSRNOG00000002178 ENSRNOT00000002962 1 1 1 83 14 10443407 10445643 AATGAAGACCTGCCAATCC 58 10443342 10443363 GTAATCTACACGTTTCTCACAC 57 NA Rattus norvegicus 81 Cdhr5 ENSRNOG00000017762 ENSRNOT00000044238 1 1 1 80 1 214260095 214260113 AGTTGGACCAGACTCTGGA 60 214259945 214260054 CATTCTCTTCCCTAGTATCCCG 60 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000012600,ENSRNOT00000064942 2 2 2 80 15 85975358 85981449 GAGAATCGAAGGTCTCTACCC 60 85975298 85975317 GCTTGCTCATTATCCGTCAG 59 NA Rattus norvegicus 81 Raet1c ENSRNOG00000040300 ENSRNOT00000062027 2 1 1 80 1 1103543 1103561 CAGATATCACCCAGCCTCC 59 1103480 1103502 AGATGATGGATGATGAGTCCAC 60 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084787 1 1 11 80 6 99076865 99076885 CCCTCAACAAGAGAATTGACC 59 99076926 99077987 CGGAATCTCTGCTGTAACTG 59 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299,ENSRNOT00000012095 3 3 3 85 13 52631871 52631889 CTGAGAAGGTGCGTTACCT 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Pdcd5 ENSRNOG00000013250 ENSRNOT00000017708 2 1 1 92 1 91175050 91175068 TTAGCACTTGTGAAGCCTG 58 91173992 91174994 TTCTGACACCTTCCCACTC 59 NA Rattus norvegicus 81 Poglut1 ENSRNOG00000003014 ENSRNOT00000051428 1 1 1 80 11 64765112 64765131 ATGTCCGAGACTATCCTCAG 58 64765173 64767822 GGTACTCCGATGTCTTACTG 57 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000047303,ENSRNOT00000078816 3 3 3 80 8 49014771 49018078 GTGAGCAAGAGAAAGGAGC 59 49014709 49014727 CTCTGACTCCTGTACTGCT 58 NA Rattus norvegicus 81 Jade1 ENSRNOG00000014066 ENSRNOT00000018872 2 1 1 80 2 128486286 128488912 AGCCTTCTGAGGTGTTTAGG 60 128488955 128488973 AGTACTCATCCGGGTTCAG 59 NA Rattus norvegicus 81 Jade1 ENSRNOG00000014066 ENSRNOT00000018872 3 1 1 80 2 128486287 128488912 GCCTTCTGAGGTGTTTAGG 58 128488955 128488974 TAGTACTCATCCGGGTTCAG 58 NA Rattus norvegicus 81 RGD1565212 ENSRNOG00000012402 ENSRNOT00000016562 2 1 1 80 15 47337441 47338854 AAGTCTTCCAGTTTCAGAAACC 59 47337382 47337400 CCCTCAGCTCATCAAACTC 58 NA Rattus norvegicus 81 RGD1311318 ENSRNOG00000038008 ENSRNOT00000057820 2 1 1 82 2 150062662 150080692 CTCAACTGCTACAGAATGATCC 59 150080734 150080753 ATCAAGTGACTGTAGGCCTG 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 1 2 4 80 5 104739501 104740929 CTTTGGTGATCCAAGATTACTG 57 104740969 104740988 GATGAACACCTCTGTTACCA 57 NA Rattus norvegicus 81 Apobec2 ENSRNOG00000012303 ENSRNOT00000016893 1 1 1 64 9 14529431 14529449 AAGGAGCTGATCGATCTGC 60 14538340 14538358 AAGAAGTTGACAGGCAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Syt14 ENSRNOG00000046139 ENSRNOT00000073041 3 1 1 80 13 111640377 111640397 GGAAGACTATCAGCAGAAGTG 58 111637432 111640335 ACAGAACAGTCCATTGGGT 59 NA Rattus norvegicus 81 Narfl ENSRNOG00000019522 ENSRNOT00000026518 2 1 1 80 10 15144959 15144977 CTAAGAAGCCTGGAAGTGG 58 15145021 15146721 TTCTTCCATCTGGGTTCAC 57 NA Rattus norvegicus 81 Ubxn1 ENSRNOG00000019666 ENSRNOT00000026651 2 1 1 80 1 225068567 225068689 AAGTTGGTCCTGAAGGATCTG 60 225068730 225068749 TAGTCTGTTCTTGCCTCTCC 59 NA Rattus norvegicus 81 Cd3d ENSRNOG00000015994 ENSRNOT00000021488 3 1 1 83 8 49285723 49285746 GGATGTATATGTGTAATGGGACAG 59 49285788 49286216 CACAGTTCTGGCACATTCG 60 NA Rattus norvegicus 81 Gpr180 ENSRNOG00000009766 ENSRNOT00000078103 2 1 1 82 15 103358007 103358027 ATCTTAAAGGTCCTCACCACC 60 103358070 103358217 CTGGAGTACCTGGAGAAGTG 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491,ENSRNOT00000000756 2 2 2 80 20 19381962 19383288 AGCAGTTTATGATGCCACG 59 19381900 19381918 TAGTGAGCTGCGTAATGGT 59 NA Rattus norvegicus 81 Mgea5 ENSRNOG00000017822 ENSRNOT00000065172 2 1 1 80 1 265514905 265515403 CTTATTGGAGACAAGTTAGTAGGAG 59 265514849 265514870 AATACCATCTTCATCTTCGAGG 58 NA Rattus norvegicus 81 Afap1l1 ENSRNOG00000019403 ENSRNOT00000026495 2 1 1 80 18 57065490 57065508 CTCCTGCAGTGAGAAGTCC 60 57062295 57065449 TACTTGTATTGATTGGCACTGG 59 NA Rattus norvegicus 81 Itga3 ENSRNOG00000004276 ENSRNOT00000005644,ENSRNOT00000035894 3 2 2 80 10 82871993 82872112 GCCTCAGCAGATAATCCAC 58 82871931 82871949 TCCATCTTCCCACTCAGAG 58 NA Rattus norvegicus 81 AABR07003616.1 ENSRNOG00000038697 ENSRNOT00000035149 2 1 1 60 1 116919239 116919260 GGTTTCAATTTACCCACTTCTC 58 116919200 116919219 GTCTATCTTCAGCATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr1i2 ENSRNOG00000002906 ENSRNOT00000003934 1 1 1 80 11 65052945 65053718 AAGGATTTCCGGCTACCTG 60 65053762 65053780 AGGGTCTTCCAACAGTGAG 59 NA Rattus norvegicus 81 Glod4 ENSRNOG00000007788 ENSRNOT00000010386 1 1 1 80 10 64388887 64392384 AGTCCATCTCAATCAGATCCT 58 64388827 64388848 ATTAGACCAGTAGTTCAAGGAC 57 NA Rattus norvegicus 81 Glod4 ENSRNOG00000007788 ENSRNOT00000010386 3 1 1 80 10 64388886 64392383 GTCCATCTCAATCAGATCCTG 58 64388826 64388847 GATTAGACCAGTAGTTCAAGGA 57 NA Rattus norvegicus 81 Tshr ENSRNOG00000003972 ENSRNOT00000005671 1 1 1 80 6 115268624 115268643 ACAGACAACCCTTACATGAC 58 115268684 115273003 GTATAGTTTCAGGGTCAAGGT 57 NA Rattus norvegicus 81 Nrgn ENSRNOG00000010688 ENSRNOT00000014404 2 1 1 114 8 40016595 40016614 TAAAGAGTGGAGAGTGTGGC 60 40016299 40016521 CGTTCAGTTCTGGCTTAATCTC 60 NA InUTR Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672,ENSRNOT00000036359 2 2 2 80 9 78596633 78596651 CACACGGCTAATACCAACC 59 78595157 78596592 ATTAATTGACCTGGTTGCTCAG 59 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 2 2 2 80 19 44143513 44143531 ATGTGAATGGTGACCTGAG 57 44141134 44143470 TCACCGATACGTTGTATCTG 57 NA Rattus norvegicus 81 RGD1304567 ENSRNOG00000025034 ENSRNOT00000032859 2 1 1 83 5 171245290 171245939 CAACATGTCTGGCTTCCTC 59 171245986 171246004 TCACAAGGTGACCTTTGTC 58 NA Rattus norvegicus 81 Saysd1 ENSRNOG00000006341 ENSRNOT00000008391 1 1 1 128 15 4658401 4658419 CTTGAGGTGGAAAGCAAGC 60 4663395 4663413 TTTGTCAGGAAAGACTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rsad2 ENSRNOG00000007539 ENSRNOT00000010092 3 1 1 80 6 45663895 45667102 CAAGGACTATGGAGACTATTTGG 59 45663837 45663858 CGACCAATGAGAACATTAACCT 59 NA Rattus norvegicus 81 AABR07043892.1 ENSRNOG00000050326 ENSRNOT00000071024 3 1 1 143 19 46164476 46167630 GATTACGTCTTTGTCGTGC 57 46164351 46164370 TAGATCCTGTCCAAATGCTG 57 NA DesignNoJunction Rattus norvegicus 81 AABR07058745.1 ENSRNOG00000050884 ENSRNOT00000071423 1 1 1 80 7 136045893 136045915 CGCAGGCTCAAATATAATCTCAG 60 136045953 136054002 GTTGTCCCTGCTGATATTGTG 59 NA Rattus norvegicus 81 Smarcd3 ENSRNOG00000010077 ENSRNOT00000066598 3 1 1 80 4 7103977 7104724 ATCCTCCCTCAAAGGATTCG 59 7104765 7104785 ATCCAGTTTCCTCTCAAATGC 59 NA Rattus norvegicus 81 LOC100910318 ENSRNOG00000049062 ENSRNOT00000073738 3 1 1 76 10 35040087 35040108 CGGGAACCTACAATTTAATCAC 58 35036840 35036861 TACAAAGTAGAAGCTTCCAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr771 ENSRNOG00000026885 ENSRNOT00000037906 3 1 1 60 3 102860320 102860339 GTGGCCCATTGGAAATAGAC 59 102860361 102860380 CAGGCTAGGTTGATTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc53 ENSRNOG00000005102 ENSRNOT00000006903 2 1 1 81 7 28763206 28763226 TTCTAAACCAGTTTGTGGTGC 59 28763268 28776036 GAAAGGTCTGCCAGTTTCTC 59 NA Rattus norvegicus 81 Gnrh1 ENSRNOG00000013441 ENSRNOT00000018006 3 1 1 82 15 44444450 44444468 CCCAGAACTTCGAATGCAC 59 44444512 44445884 CTCTTCAATCAGACGTTCCAG 59 NA Rattus norvegicus 81 Igf2r ENSRNOG00000014997 ENSRNOT00000021840 3 1 1 80 1 48231411 48231432 AGATCCACACTGATTACCTTCC 60 48231471 48231865 GGTAGAGTTGTCCTCTTCCTG 60 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 1 2 2 87 3 111023755 111036876 AACTCTTCCAGGGTCAAGC 60 111023686 111023704 TGAGTCCTTTGCTCGTCTG 60 NA Rattus norvegicus 81 LOC100361265 ENSRNOG00000025211 ENSRNOT00000037212 1 1 1 80 X 71678359 71678377 CTCTACGCCTACCATTCCC 59 71678026 71678316 GGAACATCAGACACTGTTGG 59 NA Rattus norvegicus 81 Rn60_X_0636.2 ENSRNOG00000046012 ENSRNOT00000074319 1 1 1 60 X 62959535 62959556 CATTGATTCCACAGATGAGGAG 59 62959577 62959595 AACCACCTTCTCAAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcp11 ENSRNOG00000000499 ENSRNOT00000045044 1 1 1 80 20 7647795 7647925 TGAAGAGTTTCCTGAGACCC 59 7647734 7647753 AGGATGGTTAGCTGGTTCTG 60 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891,ENSRNOT00000082474 3 2 2 84 3 163954227 163954246 GAATTACAACATGCCTTGGG 58 163951018 163954181 GACCACAAACTGTTTGATGC 58 NA Rattus norvegicus 81 LOC100912287 ENSRNOG00000050484 ENSRNOT00000073844 1 1 1 60 4 1702854 1702874 GCTGAATTCTCACCTTCACAC 60 1702814 1702838 GTCTACAAAGGACAAGTTAAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 2 1 1 158 12 13734618 13736158 CTGCAGAAGGACTACCAGG 60 13736280 13736298 CAAGTTCACCTTCACCAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC102552659 ENSRNOG00000049238 ENSRNOT00000071765 3 1 1 80 10 84843140 84843159 CATCAAATGGATGGCATTGG 58 84843202 84843464 ACAGTCACTCCATAGCTCC 59 NA Rattus norvegicus 81 Gkn3 ENSRNOG00000037782 ENSRNOT00000057350 3 1 1 87 4 119186548 119187942 GAGATACCTTATTGCACCTTCC 59 119186306 119186327 CAGAAGATGACTGTCACTAGTG 58 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115,ENSRNOT00000042781 2 2 2 80 19 28292572 28293225 TAACTTCTATCGCAACCTGCA 60 28292512 28292530 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Tomm6 ENSRNOG00000046316 ENSRNOT00000070805 1 1 1 86 9 15313643 15314349 TTCCGGAGGAACTTGATCC 59 15314396 15314417 TGCCATCAAATCAATGTCACTC 60 NA Rattus norvegicus 81 Scel ENSRNOG00000024237 ENSRNOT00000034987,ENSRNOT00000082688 3 2 2 80 15 87762015 87764193 GAGGCAGAGTCATAGGCAG 60 87764234 87764255 CTTATATTCCTCGCAGCATGTC 59 NA Rattus norvegicus 81 AABR07072593.1 ENSRNOG00000056718 ENSRNOT00000080986 2 1 1 114 18 48129641 48129660 GACAAAGTCAAGGAGTTCCG 59 48129543 48129564 CTCTCATCCCAGCCTTCAC 60 NA Rattus norvegicus 81 mrpl24 ENSRNOG00000022234 ENSRNOT00000035271 1 1 1 80 2 187293095 187293373 TGTGGACAGGAAACCTACTG 59 187293413 187293434 CTCCCAGATCTTGTAGAGACAC 60 NA Rattus norvegicus 81 mrpl24 ENSRNOG00000022234 ENSRNOT00000035271 3 1 1 81 2 187292757 187292775 GAAGCAGGGCAAAGTAGTC 59 187292820 187293014 AATGTAGCGGTAATGCGTG 59 NA Rattus norvegicus 81 Larp1 ENSRNOG00000031544 ENSRNOT00000036959 2 1 1 80 10 43485454 43485580 CCAGAAGGAGACAGAGTCAG 59 43485623 43485641 AGGTTGCTGACCTCTTCTG 59 NA Rattus norvegicus 81 Olr768 ENSRNOG00000047849 ENSRNOT00000050334 1 1 1 60 3 102801926 102801947 ACTACTTCACCATCATGAACCT 59 102801887 102801906 ATTGTCCAGGAAGTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tff3 ENSRNOG00000001159 ENSRNOT00000066266,ENSRNOT00000090275 1 2 2 80 20 9852936 9855369 TGTTGGCCTATCTCCAAGC 60 9852874 9852892 TGCTCTGATGTGACAGTGG 60 NA Rattus norvegicus 81 Psma2 ENSRNOG00000049920 ENSRNOT00000073834 3 1 1 80 17 53099516 53099535 GAGTGTACACAAAGTGGAGC 59 53097545 53099476 ACAAGGACTCTGTAATCTGGAC 60 NA Rattus norvegicus 81 Plek ENSRNOG00000005214 ENSRNOT00000007044 1 1 1 80 14 100165322 100168086 ACTGCTTCACAGGTAGTGG 59 100165260 100165278 AGATCATGAGGCCTTCCTG 59 NA Rattus norvegicus 81 Hoxb6 ENSRNOG00000007823 ENSRNOT00000010527 1 1 1 89 10 84148239 84149347 ATTCGTGCAACAGTTCCTC 59 84149400 84149418 ATTCCTTCTCCAGCTCCAG 59 NA Rattus norvegicus 81 Ago4 ENSRNOG00000025596 ENSRNOT00000035373 2 1 1 80 5 144535004 144535024 GCTGAAATACTCCCATCTTCC 59 144534463 144534964 ATATTACAGACCTCAAGTGGC 58 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845,ENSRNOT00000031328 2 2 2 81 3 177229382 177229484 AGTGGAAGATGAAGAGATCGAG 60 177229525 177229544 GATGCAGATGGCGAATACAG 59 NA Rattus norvegicus 81 Olr784 ENSRNOG00000050402 ENSRNOT00000074456 1 1 1 60 3 103217277 103217298 AGCACCCAAGATGATTTATGAC 59 103217238 103217258 ACAACCTCCAAATGAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 3 2 2 78 1 173730216 173730234 CTTTCGAGATGGTGATGCG 59 173728591 173730176 AATCTCTGATTGCAGAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Arf1 ENSRNOG00000060229 ENSRNOT00000080028 3 1 1 93 10 45564484 45564504 GAATATCAGCTTCACCGTGTG 60 45564225 45564429 GAAGATCAAGCCTTGGGTG 59 NA Rattus norvegicus 81 Mmp1 ENSRNOG00000032353 ENSRNOT00000012595 3 1 1 80 8 5706373 5706393 GTGATGGTGATCTAACCTTCG 59 5706435 5720963 CACGAATGTAGAACCTGCC 59 NA Rattus norvegicus 81 Meaf6 ENSRNOG00000009309 ENSRNOT00000067204 3 1 1 97 5 143096371 143096389 AGTGAAGCCTCAGAAAGCT 59 143096450 143101574 TCAGATCAATCCTGTGCCG 60 NA Rattus norvegicus 81 Igfbp2 ENSRNOG00000016957 ENSRNOT00000023068 1 1 1 80 9 80142457 80142478 GTCCTCTGGAACATCTCTACTC 60 80142518 80144340 ACATCTTGCACTGTTTGAGG 59 NA Rattus norvegicus 81 Tsr3 ENSRNOG00000017858 ENSRNOT00000068336 1 1 1 94 10 14599661 14599788 GAACATCGATCCCTTTGACG 59 14600072 14600090 TGTCATCCGTGTCCATAGG 59 NA Rattus norvegicus 81 Vwa3a ENSRNOG00000025110 ENSRNOT00000036175 1 1 1 80 1 190713998 190714016 CCTCTCACCATCAAGTTCC 58 190714058 190714175 TAACTTCTTGGCTTTCAGACC 58 NA Rattus norvegicus 81 Hoxa7 ENSRNOG00000046361 ENSRNOT00000071729 2 1 1 82 4 82184722 82185730 CAGTTCAGGACCCGATAGG 59 82184658 82184678 TGAAGTGGAATTCCTTCTCCA 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458,ENSRNOT00000084445,ENSRNOT00000015158 1 3 3 80 19 49473686 49475184 TTTAACGAGTATGACCAGACCT 59 49475224 49475243 ATCTGTCTTCAGTCCAAGGC 60 NA Rattus norvegicus 81 Plin5 ENSRNOG00000047860 ENSRNOT00000073930 1 1 1 82 9 10959530 10959548 ACTGAGGGAGAGCAAACAC 60 10959591 10960454 TACTCTGCATATGCTGGATCAG 60 NA Rattus norvegicus 81 Deptor ENSRNOG00000004328 ENSRNOT00000005722 3 1 1 80 7 94960512 94960532 GTTCGAGGAAGTAAACCATGC 60 94960573 94995491 CTGACAGACCTTCATCCCTG 60 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000018681 ENSRNOT00000025314 1 1 2 80 2 187345926 187347614 ACATACAGGACTCTGCTGG 59 187347658 187347676 CAGAAAGCCAAGAGAAGCC 59 NA Rattus norvegicus 81 Pik3cd ENSRNOG00000016846 ENSRNOT00000066179 1 1 1 80 5 166608866 166609627 TCTGGAGAAGATCCTGGAG 58 166608470 166608488 GAGCACAGCAAATAGAGCA 58 NA Rattus norvegicus 81 Pik3cd ENSRNOG00000016846 ENSRNOT00000066179 2 1 1 80 5 166608101 166608119 AAATTCTTGTTGGGCCGAG 59 166607840 166608057 TACATGCATCTCAGAGCGG 60 NA Rattus norvegicus 81 Ube2z ENSRNOG00000006868 ENSRNOT00000055500 3 1 1 80 10 83881381 83884058 TGCTTGAGTATTCTAGGTACG 57 83881321 83881340 CTGGATGGAGATAAGCACAG 58 NA Rattus norvegicus 81 Slc41a1 ENSRNOG00000042320 ENSRNOT00000063882 2 1 1 83 13 48619628 48619646 TTTAGCATCCCACATGCCT 59 48619692 48619853 CATGATCATACCCAGGACCA 59 NA Rattus norvegicus 81 Ubap1l ENSRNOG00000050979 ENSRNOT00000072939 2 1 1 84 8 70887127 70889641 CTACAGTAGCTTCCCTCAGC 60 70889688 70889706 GGATGCAGTCTACAGGAGG 59 NA Rattus norvegicus 81 Dhrs3 ENSRNOG00000015736 ENSRNOT00000021155 1 1 1 80 5 162835406 162835748 CAATTCTGGACCACCAAGG 59 162835792 162835810 AAGCACAGAATTGAGGCAC 59 NA Rattus norvegicus 81 Slco4a1 ENSRNOG00000053430 ENSRNOT00000080656 3 1 1 80 3 175855635 175855655 CTATGTACTACTCTCCCTGCT 58 175855697 175855807 AGCCTCGGTATACCTTCTG 58 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 1 2 2 80 6 1442721 1442740 ATACCGAGTTTGTTGGGAGG 60 1441006 1442681 GTCTTGTATCGACTTGTGTCAC 60 NA Rattus norvegicus 81 Pla2g10 ENSRNOG00000003164 ENSRNOT00000004237 2 1 1 87 10 1518465 1518486 GATGGCTTACATGAACTATGGT 58 1518072 1518417 ATGGTAGTAGCAGCACCAG 59 NA Rattus norvegicus 81 Sdr42e1 ENSRNOG00000051819 ENSRNOT00000079760 3 1 1 82 19 50211241 50220391 CTGTCATCTGCCTCTGTCC 60 50211177 50211196 GGTAATGAGGACGGTTTCCT 60 NA InUTR Rattus norvegicus 81 Prm2 ENSRNOG00000002539 ENSRNOT00000003450 2 1 1 103 10 4950653 4950672 TTCACAGGATCCACAAGAGG 60 4950860 4950878 CCTCCTTCGGGATCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Wwox ENSRNOG00000012030 ENSRNOT00000058779 1 1 1 84 19 46770872 46770890 CCATGGAGATACTGCAGGG 60 46770935 46771471 ACTAGGAAGGTTCCTATTCCTG 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 1 2 2 80 1 197915474 197916322 CCGATATGTCTAATGGATGGGA 59 197915415 197915435 TGTCATAGGTGGTCTTCACTC 59 NA Rattus norvegicus 81 LOC100909612 ENSRNOG00000046239 ENSRNOT00000072100 1 1 1 80 19 29400068 29400177 CAACACTGTGGAAAGGGAC 59 29400006 29400025 TGAGGTCATATGTCACCAGC 60 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000018148 ENSRNOT00000024427 1 1 1 80 15 5863392 5863410 AGAGATGGGACCACATGAC 59 5862976 5863352 CATCAAGTTCCAGAGGATTTGAC 60 NA Rattus norvegicus 81 Exd1 ENSRNOG00000025360 ENSRNOT00000038365 1 1 1 80 3 111338061 111338079 CAGAGTGTCCTGAGTGTCG 60 111336469 111338017 GTTTGTGGCTACCTGAAGC 59 NA Rattus norvegicus 81 Fdft1 ENSRNOG00000021314 ENSRNOT00000032089 3 1 1 80 15 46346277 46346295 TGACGTCATCACCTACCTG 59 46345186 46346233 GCAATGGCCATTACCTGTG 60 NA Rattus norvegicus 81 Clec3a ENSRNOG00000012238 ENSRNOT00000016307 2 1 1 80 19 46738533 46740832 GCAGACAGTCTGTCTTCGA 60 46740875 46740894 GCTTCGTGGTAATGCTTGAG 60 NA Rattus norvegicus 81 Nuggc ENSRNOG00000018238 ENSRNOT00000024527 1 1 1 80 15 49049307 49050538 GATCCAGGAGATAAGTGCCA 59 49050577 49050599 GTGACAGACTCATAGATCTTCCT 59 NA Rattus norvegicus 81 Car6 ENSRNOG00000021355 ENSRNOT00000051309 2 1 1 80 5 167237425 167237444 AGAAGTACGAGACCTACGAG 58 167233641 167237385 AATCCTCAACCTTAACCAAGAC 58 NA Rattus norvegicus 81 AABR07000663.1 ENSRNOG00000056705 ENSRNOT00000091252 3 1 1 80 1 22332594 22332612 ACAGGCATCAGTGCTATGG 60 22332654 22332675 GTCTTGATTGACAACTTGGCA 60 NA Rattus norvegicus 81 Bspry ENSRNOG00000015105 ENSRNOT00000020366 3 1 1 81 5 78337995 78338013 CTGCAGTTACAGAGTGCTG 59 78338055 78346613 TAGCCATGATCATTGCTTTCTG 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000088603 2 3 4 80 12 11234579 11235577 GAAAGCCATAAGCAGAGAACTC 60 11234520 11234539 TTCTTCCACTTCGCAATCAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 1 7 8 60 20 1960488 1960506 GATGTCCTGACTCTTGCCA 59 1959901 1960464 AAGTCTCAATGGTTCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 3 2 2 80 1 47679909 47683045 GTCACAGAATCAGACAATCCTC 59 47684199 47684217 ATGCTTGAAAGCAAACGGG 60 NA Rattus norvegicus 81 Ms4a1 ENSRNOG00000020945 ENSRNOT00000028433 1 1 1 80 1 227431360 227432433 TGTTCTTGGGCATTCTGTC 58 227431298 227431317 ACTCATTCTCTACAACACCG 57 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655 2 1 2 86 13 91958470 91959715 GTCCTCAAGTTAAGCCTCAG 58 91959761 91959782 TGACTACTAGTGAATCTTGCTG 58 NA Rattus norvegicus 81 Ppif ENSRNOG00000010558 ENSRNOT00000014382 3 1 1 91 16 1979403 1980528 GTGCTGGAGTTAAAGGCAG 59 1981061 1981079 GAGCCTTTGTAGCCAAAGC 60 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000050532 ENSRNOT00000074397 3 1 1 60 17 35477481 35477501 GGAATGAGCCTTTCATTCTCG 60 35477523 35477541 TCTGCCGATGAAGAAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhfpl1 ENSRNOG00000027601 ENSRNOT00000030400 1 1 1 82 X 116579749 116616661 CAATTTCAGTTAGGAACCTGTAGAC 60 116579691 116579709 GTGCAGATCAACATGGCTG 60 NA Rattus norvegicus 81 Sh2d2a ENSRNOG00000013294 ENSRNOT00000017798 2 1 1 90 2 187220303 187220321 ATGGGTTCAGAAGACCCAG 59 187220375 187220956 CCTCTCAGCTTCCCTTCTG 60 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000026163 2 1 2 92 19 37885153 37904544 GGACAAGCAAGAAGTCATCAC 60 37904598 37904616 GTAAAGGAGGGTCTGGCAG 60 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000089921 3 1 2 64 19 37886075 37886095 GGGCAAATACAGTTATTTGGG 58 37903408 37903426 CAATGAAGTCCTTGGCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 1 3 3 80 1 88587105 88587123 CATGATCCGCAAGTTGGAG 59 88587163 88590622 TCTTCATCTTCCAGATAGCTCTG 60 NA Rattus norvegicus 81 Zkscan5 ENSRNOG00000059552 ENSRNOT00000090073 2 1 1 81 12 11163994 11164012 GACCAGTCCCAGAAGTCTC 59 11157985 11163951 CCTTGGGTTCATAATCCACAG 59 NA Rattus norvegicus 81 Irf6 ENSRNOG00000005082 ENSRNOT00000007333 1 1 1 80 13 111885043 111885061 ACTTGCTGCTCCTAACCTG 60 111885105 111885861 GCAATGAGCTCACTCAGGA 60 NA Rattus norvegicus 81 Vom2r57 ENSRNOG00000026976 ENSRNOT00000047547 2 1 1 80 7 22932690 22932710 TGAGTGACGATCTGTTTCC 57 22932628 22932646 TCATCAAGGATACCATGGC 57 NA Rattus norvegicus 81 LOC100365798 ENSRNOG00000045865 ENSRNOT00000007690 1 1 1 60 3 76102516 76102539 CTGGCTAACATCTTCAATATGGAC 60 76102479 76102498 AGAATTGGACCATACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snapin ENSRNOG00000013356 ENSRNOT00000018830 3 1 1 81 2 189880025 189880307 CAACCTAGCTACAGAACTGTG 59 189879964 189879984 AAGCAGCTTCTTAACATAGGG 58 NA Rattus norvegicus 81 Upf1 ENSRNOG00000020134 ENSRNOT00000027268 3 1 1 80 16 20836881 20836899 GTACCAGAACATCTTCGGG 58 20836940 20837403 TTATCTTGAGTCTGTGACTCCT 58 NA Rattus norvegicus 81 Olr251 ENSRNOG00000050593 ENSRNOT00000040363 2 1 1 60 1 172368666 172368687 GTGTCTGTCTTCTACTTGTTGG 59 172368627 172368647 TTCTGAGACTGTAAATGAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Havcr1 ENSRNOG00000007243 ENSRNOT00000009573 1 1 1 80 10 31830774 31830793 ACATGTACCAACATCAACCA 58 31830833 31833747 GTAGTGATTTCTGGTTTGTGAG 57 NA Rattus norvegicus 81 Bend7 ENSRNOG00000022712 ENSRNOT00000032173 3 1 1 83 17 77486479 77496756 TCCTCAGATCCAGAAGTGC 59 77486414 77486438 GTAGTTTGACAATATAGAGTCCAGC 60 NA Rattus norvegicus 81 LOC100911763 ENSRNOG00000020801 ENSRNOT00000002054 1 1 1 80 1 251336256 251336418 GGGATATGGTGTGATCTTTGC 59 251336196 251336215 CCGAAGTTTCTCATGGTGAC 59 NA Rattus norvegicus 81 Rps27a ENSRNOG00000004426 ENSRNOT00000005872 1 1 1 80 14 113966757 113966975 CTGTGCTGAAATACTATAAGGTGG 59 113966700 113966720 CACCACATTCATCAGAAGGAC 59 NA Rattus norvegicus 81 RGD1306926 ENSRNOG00000036699 ENSRNOT00000054974 2 1 1 80 10 109542841 109544717 ATCAGACGAATAAAGACGATGG 59 109542782 109542803 CTGTAAATACTGCATACGGAGG 59 NA Rattus norvegicus 81 Marcksl1 ENSRNOG00000009113 ENSRNOT00000012663 2 1 1 60 5 147715470 147715488 GAGAAATCGGAAGGAGGGT 59 147715512 147715530 TTGCTCTTCCTCTGTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pop4 ENSRNOG00000027646 ENSRNOT00000020474 3 1 1 80 1 94662687 94662705 TTACGGGAATCCTTCTGCA 59 94661607 94662646 GCTTAGGGATAACTTTCAGGTG 59 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000091423,ENSRNOT00000009400 3 2 2 81 X 115726953 115726971 CGAAGAACTTGACCCACAG 59 115679345 115726908 AGCGACAAACTCTTTCTGG 58 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 2 3 3 82 11 70381895 70381916 CAGACTTCTAGGAGTGAATCAC 58 70359773 70381855 AGAAAGAAATCTTCTCCGTTCG 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392,ENSRNOT00000070981 2 2 2 106 10 13417264 13417282 TACAGCAAGGATGCTGAGG 60 13417352 13417868 CCAGAGTCACCCTTACAGG 59 NA Rattus norvegicus 81 LOC300249 ENSRNOG00000009614 ENSRNOT00000012738 3 1 1 60 7 143444192 143444212 ACAAGATGATGAACACAGACC 58 143444234 143444252 AGGGCTCTTTGGATCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_12_0174.1 ENSRNOG00000024342 ENSRNOT00000030304 2 1 1 60 12 15347121 15347141 GATCTCGCTAACATCAAATGG 57 15347081 15347099 CACCAGTAGACTCCATGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC298111 ENSRNOG00000050117 ENSRNOT00000048383 3 1 1 85 5 52767177 52767503 TGTGGACAAGCTAAATGGG 58 52767110 52767128 ATCTCATGCTGCCATTCTG 58 NA Rattus norvegicus 81 Olr776 ENSRNOG00000047253 ENSRNOT00000044181 3 1 1 60 3 103065797 103065815 ACAAGTTGCAGTTCATGGT 58 103065755 103065775 AACAAGAAAGAGCCAACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap23 ENSRNOG00000022771 ENSRNOT00000034305 2 1 1 80 10 85416816 85432498 GACACTAATCCAGCATTCTGAC 59 85433368 85433386 GGCTCCTTGTCATCAACAG 59 NA Rattus norvegicus 81 Olr533 ENSRNOG00000030825 ENSRNOT00000045231 3 1 1 60 3 74574415 74574434 AATGAACTTCTGCTCTTCGT 58 74574374 74574396 TGATGACCAAGATAGTGAGTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r4 ENSRNOG00000045921 ENSRNOT00000052208 1 1 1 60 1 86533790 86533808 GTTTCCTCCAGAACATCCC 58 86533830 86533850 TGAACATGAGAGCCAGTATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr777 ENSRNOG00000050428 ENSRNOT00000045645 2 1 1 60 3 103089994 103090012 TGTAAGCCTCTGCACTACC 59 103089952 103089971 CAGCCAGAAACAAAGTACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs19 ENSRNOG00000016547 ENSRNOT00000022451 3 1 1 113 3 177197696 177199179 GTAGCTGTTCCTGGAACCA 59 177197511 177197529 GTACTTCCTCAGGGCTTGG 60 NA Rattus norvegicus 81 LOC100911238 ENSRNOG00000049229 ENSRNOT00000071796 1 1 1 91 12 8976654 8978445 TCCAAGATGAACGCCAGAG 60 8978500 8978518 TCATGACTCTCGAAAGGCC 60 NA InUTR Rattus norvegicus 81 Bpifa2 ENSRNOG00000013540 ENSRNOT00000018226 2 1 1 90 3 149495254 149495787 GAATGGTTTATTGTTGCGAGTC 59 149495838 149495856 CAGTTTCAGGTCGATGTCC 58 NA Rattus norvegicus 81 Rusc2 ENSRNOG00000045843 ENSRNOT00000072869 1 1 1 80 5 58878706 58878812 GTCTGAATGGTCAGATCGC 58 58878855 58878874 GAGGCTTCTCAGTTAAGGAG 57 NA Rattus norvegicus 81 Arsi ENSRNOG00000026060 ENSRNOT00000030966 1 1 1 126 18 56180283 56180302 TGGCTCAGATATTGAGACCC 59 56180391 56184667 GATCTGGTACCTGCCAGTG 60 NA Rattus norvegicus 81 Vom1r86 ENSRNOG00000051609 ENSRNOT00000087374 3 1 1 60 4 88271794 88271817 TCATCATCTCATCCACATCTATCC 60 88271832 88271854 TGAATAGTCAGGATAACAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnpy1 ENSRNOG00000028311 ENSRNOT00000071713 3 1 2 85 4 480610 480629 ACTTACTGGCTCTCACTCAG 59 480543 480562 GAAGGCTGTGAAGAACTGG 59 NA Rattus norvegicus 81 Dyrk2 ENSRNOG00000007821 ENSRNOT00000010283 1 1 1 86 7 61791950 61798685 ACTACATCCCACACGATTGG 60 61791883 61791901 CTGAACCTGGATCTGTCCG 60 NA InUTR Rattus norvegicus 81 Lrrc46 ENSRNOG00000009902 ENSRNOT00000013542 1 1 1 80 10 84972565 84972583 GGAGGACAAATCCTCGGAC 60 84972090 84972522 TCCTTGAAGAATCCTCGCTC 60 NA Rattus norvegicus 81 Aak1 ENSRNOG00000018317 ENSRNOT00000043082 2 1 1 80 4 118767407 118768467 CAGTAAATCTAAGTCTGCAACC 57 118768507 118768526 CCTTCGGAAGCATTAGAGAC 58 NA Rattus norvegicus 81 Astn2 ENSRNOG00000060105 ENSRNOT00000084147 1 1 1 80 5 81722804 81722822 TACACAACACTGGAGAGGG 59 81722000 81722762 CAAGCTGAAAGTAGACCTGAG 59 NA Rattus norvegicus 81 Npas1 ENSRNOG00000015376 ENSRNOT00000020855 2 1 1 80 1 78429533 78429668 TCCTACAGTCCTTGGATGG 58 78429471 78429490 AGATGGACACTGTCTCTGAG 59 NA Rattus norvegicus 81 Olr631 ENSRNOG00000032712 ENSRNOT00000050173 1 1 1 60 3 76718464 76718484 GGACATTTGCTATACCTCCTG 58 76718424 76718443 TCTCTTTACAAGCAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spaca3 ENSRNOG00000006994 ENSRNOT00000009172 2 1 1 94 10 68233195 68233213 ATCTTCCAGATCAGCAGCC 60 68233269 68233691 TCATTGCTCAACAAATCCGTG 60 NA Rattus norvegicus 81 Fam83e ENSRNOG00000021039 ENSRNOT00000028564 2 1 1 80 1 101706061 101706079 CTTGACCACCAACATCTGC 59 101706123 101706390 ATCCAGGTTCTCAGTGGTC 59 NA Rattus norvegicus 81 Lrrd1 ENSRNOG00000026196 ENSRNOT00000032529 1 1 1 82 4 27404950 27405545 CCTGTAAAGACCACTACTCCA 59 27404888 27404909 GTGAATGATACCCTCTTCTCTG 58 NA Rattus norvegicus 81 Rps17 ENSRNOG00000019106 ENSRNOT00000025888 3 1 1 80 1 143168452 143168924 GAGATAATTATGTTCCTGAGGTCTC 59 143168396 143168414 GCTTCAGCATTTCCTTGGT 59 NA Rattus norvegicus 81 Ptar1 ENSRNOG00000014891 ENSRNOT00000054775 2 1 1 80 1 241522002 241522021 ATCCCAGCAACTATAATGCC 58 241522061 241554813 CAAGAAGGATCTTCAGATCCAG 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 1 4 4 80 1 265551480 265551498 CAAGTACACATACCCTGCC 58 265551295 265551437 TTGTTCCTGTCCATCTTCTG 58 NA Rattus norvegicus 81 Gng10 ENSRNOG00000025040 ENSRNOT00000020707 1 1 1 136 5 76182231 76185944 GTGGAGAGGATCAAGGTCTC 59 76186043 76186061 AGTAAAGCACAGGACCTGG 59 NA Rattus norvegicus 81 RGD1561671 ENSRNOG00000028997 ENSRNOT00000046385 2 1 1 81 17 11915807 11915829 CTACTACAAGTACAAGTACCCTC 58 11915548 11915768 CAGGATCAGCTTCTTGTACTC 58 NA Rattus norvegicus 81 Coq6 ENSRNOG00000011164 ENSRNOT00000014913 1 1 1 80 6 108084016 108084627 ACCAAGCTGTTGATTGGTG 59 108084669 108084689 GTAGTTCCAGCCAACATTCTG 59 NA Rattus norvegicus 81 Zfp213 ENSRNOG00000021872 ENSRNOT00000030704 1 1 1 169 10 12889640 12889658 GGAGCAGATCCTGGAACTG 60 12888686 12889507 CTGAGAGCTCATCCTGTGG 60 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 2 2 2 81 19 39070939 39071876 TTGGAGGAGATGTCCAAATCC 60 39071919 39071937 TTGAAGGCCATCCAGTACC 59 NA Rattus norvegicus 81 Cldn10 ENSRNOG00000010085 ENSRNOT00000013520,ENSRNOT00000083269 1 2 2 91 15 104101942 104101960 AGTGTACCAAAGTCGGAGG 59 104102015 104102121 CATGGAACACAGACCTGAC 58 NA Rattus norvegicus 81 Olr646 ENSRNOG00000049365 ENSRNOT00000074443 1 1 1 60 3 77018375 77018394 CTGTCACTCATGGATGTCAC 58 77018412 77018435 GGGAGTCAATAATCAACTTAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000077045 1 1 3 84 X 65081893 65083636 TAAGAGTAGCACTCTGGGC 59 65081827 65081845 TCCTTGGTTCCAGAGAAGG 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000077045 2 1 3 86 X 65081894 65083638 TCTAAGAGTAGCACTCTGGG 58 65081827 65081845 TCCTTGGTTCCAGAGAAGG 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 3 2 2 80 1 141578725 141578743 GGCCTCATTCAACATCACG 59 141578584 141578681 AGGGTCCTGGAATCTTTGG 59 NA Rattus norvegicus 81 Ift20 ENSRNOG00000008891 ENSRNOT00000011795 2 1 1 81 10 65807936 65807956 GACATACCTCCTGATTGACAC 58 65807999 65808142 CTTGGCCATAGCTGTTTCC 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000080260 1 2 3 86 7 143491698 143491716 GATGAACGTTAAGCTGGCC 59 143490094 143491648 AACTCTCCAGACAACCTGC 60 NA Rattus norvegicus 81 LOC100911166 ENSRNOG00000010528 ENSRNOT00000014129 1 1 1 80 3 112521916 112521934 TGCTCATGTTTGCCAAGAC 59 112521977 112522858 CATATTCCTTCTCCAGCTGC 59 NA Rattus norvegicus 81 Mboat2 ENSRNOG00000061050 ENSRNOT00000082657 3 1 1 80 6 44118925 44118946 CAAAGCCACCTATCTGTATGTC 59 44118985 44121999 TTAATGGCATCAGCTAAGGTC 58 NA Rattus norvegicus 81 Amn1 ENSRNOG00000036917 ENSRNOT00000055441 1 1 1 80 4 183671072 183676102 CCCTGATAACAGATCATTCACG 59 183671013 183671032 AAACAGACCAAGTCACTTGC 59 NA Rattus norvegicus 81 Rtp2 ENSRNOG00000022160 ENSRNOT00000036777 2 1 1 80 11 80328484 80328504 CAATCTCAAACCCAATGAGCT 59 80328546 80331097 CAAGAACAGTGGAACCTGC 59 NA Rattus norvegicus 81 Itm2a ENSRNOG00000002365 ENSRNOT00000003265 1 1 1 80 X 78493264 78493282 CTCTCGTTCATCTTGGCAG 58 78492932 78493221 ATGGTAAATGGTGCTCTTGG 58 NA Rattus norvegicus 81 Wipf3 ENSRNOG00000009571 ENSRNOT00000074054 3 1 2 131 4 84660383 84660402 ACCAGGTCAGAAGATTTACC 57 84670002 84673945 AGTGCCTTTAGAGATAACTGAG 57 NA Rattus norvegicus 81 LOC100909752 ENSRNOG00000060381 ENSRNOT00000088385 2 1 1 80 5 62913190 62913209 AGACGGAATCAGCACTATGG 60 62913249 62914844 TTGATCAAAGAACTGGACAGGA 60 NA Rattus norvegicus 81 Clvs2 ENSRNOG00000012122 ENSRNOT00000016518 3 1 1 80 1 25174904 25174922 AATCTGGACCACTATGGGA 57 25174963 25216067 AATATCCACCAGTGTATACCTG 57 NA Rattus norvegicus 81 Eda2r ENSRNOG00000013018 ENSRNOT00000017429 1 1 1 80 X 66565594 66567131 CTTCTGAGGTTCAGTGTACC 58 66565533 66565551 CAAGTGTGGCTTCCTTAGG 58 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094,ENSRNOT00000038132 2 2 2 80 9 65921804 65922464 TATGGACACAGGATGCTGG 59 65921742 65921760 AAGGACTGCAAGTACAGCA 59 NA Rattus norvegicus 81 Elf5 ENSRNOG00000008282 ENSRNOT00000011035 2 1 1 81 3 93360087 93363469 CGCTCACAAGGTTATTCCT 58 93369536 93369554 TCAAGCAACTGGAATCAGC 59 NA Rattus norvegicus 81 Oacyl ENSRNOG00000024640 ENSRNOT00000066659 3 1 1 80 18 61408964 61408982 CGCTGTACCTCTACTCTCG 59 61409025 61414439 GTGCACTTAACCAACCACTG 60 NA Rattus norvegicus 81 Vom1r88 ENSRNOG00000031987 ENSRNOT00000040163 1 1 1 60 4 88423890 88423911 CTAAATCCTGCTTTCTCTTCCC 59 88423930 88423950 GCCATTGTTACCATCAATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r79 ENSRNOG00000057572 ENSRNOT00000089498 2 1 1 60 4 87982085 87982104 AGACTATCTTGCTGCTTGTG 58 87982044 87982063 GAGATGATGAAGTCCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012299.1 ENSRNOG00000029177 ENSRNOT00000044052 1 1 1 119 2 192416616 192416634 TGTCTTACCAACAGCAGCA 60 192416716 192433866 ACTTTGGAGGTGAACAAGGT 60 NA Rattus norvegicus 81 Zfp474 ENSRNOG00000018724 ENSRNOT00000025273 3 1 3 82 18 47594176 47605741 CATGAGCCATCTTGGAGAC 58 47605787 47605805 TACTCAGAGCTTCGTTGGA 58 NA InUTR Rattus norvegicus 81 AABR07053533.1 ENSRNOG00000049007 ENSRNOT00000071591 1 1 1 80 3 112613397 112614218 AATAAGCTGGCGTATGGGA 59 112613335 112613355 CTCAGTAAGCTCAGTCATGTC 58 NA Rattus norvegicus 81 Btnl8 ENSRNOG00000029340 ENSRNOT00000041348 1 1 1 80 20 2847812 2848174 TTCCAGACCTGGACTTTCAC 60 2847751 2847771 GGTCACTCTCATCCTATCCTG 59 NA Rattus norvegicus 81 Rtp1 ENSRNOG00000021992 ENSRNOT00000032383 3 1 1 81 11 80826220 80826238 CTGGAACTTCATGCCTCAG 58 80824465 80824485 GGAAGAGGATAACTACGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1564419 ENSRNOG00000050564 ENSRNOT00000075254 3 1 1 137 4 82301548 82301566 ACCTTGGGCTGCTTTAGAG 60 82303929 82303947 TTCTAGGACTGGAACTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_1073.1 ENSRNOG00000051336 ENSRNOT00000075854 3 1 1 67 5 103230303 103230321 GCCTTCCATGTTCCTAACC 58 103229330 103230273 TTTGGAAGTTTCTCCAGGCA 60 NA DesignNoJunction Rattus norvegicus 81 AABR07058124.1 ENSRNOG00000037549 ENSRNOT00000056894 2 1 1 80 7 101070192 101070212 CCGTCTAAACAGAATGACAGC 59 101070251 101070873 GGTTCTGGTAGAGTTTCATCAC 59 NA Rattus norvegicus 81 Olr279 ENSRNOG00000046162 ENSRNOT00000047040 3 1 1 60 1 172943499 172943519 CAGTTGAATGTTTGCTTCTGG 58 172943459 172943480 GGGCTACAGATTGCTATAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yars ENSRNOG00000007213 ENSRNOT00000010674 1 1 1 80 5 147401059 147401077 TATGAGAAGGGCCAACCTG 59 147401119 147402780 AGAAATCTTAAAGTCGGCCTG 59 NA Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 3 2 2 87 6 67083576 67083595 CAGACAATTGTTCAGTTGCA 57 66984470 67083526 CCCTCTCAGTAGTACCTGG 58 NA Rattus norvegicus 81 AABR07002854.1 ENSRNOG00000047624 ENSRNOT00000072441 1 1 1 88 1 87154871 87154889 TAGACTCGCCAGTTGATCC 59 87153858 87154720 TGCATATACCTCTCCCGGA 60 NA Rattus norvegicus 81 AABR07002854.1 ENSRNOG00000047624 ENSRNOT00000072441 3 1 1 90 1 87154924 87154942 ATTTCTGGAACACCAGCCT 59 87154753 87154873 GCTCAAATATTTCTCTTGCGGA 60 NA Rattus norvegicus 81 Olr85 ENSRNOG00000015785 ENSRNOT00000021131 1 1 1 60 1 168349156 168349174 AGCCAGAATCAAGTCCCTC 59 168349197 168349216 GTAGAAGGCAAGGATGACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncs1 ENSRNOG00000008761 ENSRNOT00000011648 2 1 1 80 3 10568010 10568030 AACAGTTCTTCCCATTTGGAG 59 10566632 10567968 TCCTGCCATCCTTGTTCTC 59 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973,ENSRNOT00000081825 1 2 2 80 5 48330505 48341074 GCTTCGGGACAAATTTCCA 59 48341116 48341136 TCAGATTCACTGTAGCTTCCA 59 NA Rattus norvegicus 81 Rsl1d1 ENSRNOG00000032439 ENSRNOT00000044593 2 1 1 80 10 4379127 4379147 TATTGCTGATGAACGAATCCG 59 4379185 4379290 GATACTGGAACTTTCTTCCTCTG 59 NA Rattus norvegicus 81 Ndufc2 ENSRNOG00000012383 ENSRNOT00000016509 1 1 1 101 1 162370033 162375110 TGAAAGCAGGTTTGCATCG 60 162375175 162375193 GGTCCCTCACAGCATACAG 60 NA Rattus norvegicus 81 Tekt2 ENSRNOG00000011033 ENSRNOT00000014721 2 1 1 80 5 144343186 144343205 CAGACACGGAAATGAAAGCA 59 144343000 144343146 CTTCCAGTTCATTGTTGGTCTG 60 NA Rattus norvegicus 81 Cd59 ENSRNOG00000042821 ENSRNOT00000067085 3 1 1 83 3 94018609 94025286 GTTCCACAGGTGTTAGCCT 60 94025333 94025351 GGTTAGGAGAGCAAGTGCT 59 NA Rattus norvegicus 81 Arhgef19 ENSRNOG00000047967 ENSRNOT00000067574 2 1 1 80 5 159766121 159766225 AGTGCACTAAAGGAGCTGG 60 159766269 159766287 ACTCAGGTGAATGAGCTCC 59 NA Rattus norvegicus 81 Pdcd6 ENSRNOG00000014485 ENSRNOT00000019735 2 1 1 80 1 31587538 31587556 ATTTGACAGGCAAGGACGA 60 31587600 31590931 ATGTCTGTCAACCTCTGCA 59 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000086884,ENSRNOT00000087695 1 2 4 80 20 2503941 2503960 ATGTGCAATTTCCCATACCC 59 2504000 2505250 TGAAGTTTCTCCTTGTACTCCT 59 NA Rattus norvegicus 81 Cnst ENSRNOG00000002710 ENSRNOT00000003641 3 1 1 80 13 97890006 97891544 GGAAGAGGACTATGAGAAAGCA 60 97891585 97891603 GCAGAAAGATTGGCAAGCA 59 NA Rattus norvegicus 81 Akr1c19 ENSRNOG00000038319 ENSRNOT00000058351 3 1 1 80 17 69659587 69661736 TATAAACCGGAAGAGGTTCCT 58 69661778 69661796 ATCAATATGGCGGAACCCA 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 2 3 3 80 3 95724041 95724060 AGTCACATCCCTATCAGCAG 59 95724103 95724234 AAAGGAGGAGACAGGTGTG 59 NA Rattus norvegicus 81 Vom1r47 ENSRNOG00000034101 ENSRNOT00000051024 2 1 1 60 1 67025890 67025911 CTATACTGCTCAACACTTTCTG 57 67025929 67025950 GAGAATAGTTTGGGTAGCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmed6 ENSRNOG00000020406 ENSRNOT00000027686 3 1 1 80 19 39266740 39266760 GGGTTTCCTTATTGACACCTC 59 39265926 39266702 CAAAGCTGATAGAAACCTGTCTC 60 NA Rattus norvegicus 81 Nkap ENSRNOG00000053813 ENSRNOT00000089883 2 1 1 80 X 123765467 123765577 TCGATCAAAGACAGAAGAACCA 60 123765616 123765636 AAGGGCTTATCATCTTGGGAG 60 NA Rattus norvegicus 81 Zbtb8os ENSRNOG00000008226 ENSRNOT00000074628 1 1 1 80 5 147536073 147536094 CGATCAAGAACAAGTATCCTCC 59 147540345 147541335 CCCATGCATGTAACTGGAC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 3 7 9 81 4 14184373 14185780 TGCAAAGAAGGAAAGCCTG 59 14185824 14185843 AGCCTTCGATAGGTTCTGAG 59 NA Rattus norvegicus 81 Wnt4 ENSRNOG00000013166 ENSRNOT00000018064,ENSRNOT00000081893 1 2 2 68 5 155666655 155666673 ATCTGGAGAAGTGTGGCTG 59 155666705 155666810 ATCCTGACCACTGGAAACC 59 NA DesignNoJunction Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000078663 2 1 2 177 7 142905769 142905787 CCATCCAGAGTCTGCTCAG 60 142905927 142915510 ATACAGGGCATCTCAGTGTG 60 NA InUTR Rattus norvegicus 81 LOC100360750 ENSRNOG00000030374 ENSRNOT00000050289 1 1 1 87 13 47380685 47380703 GCATTGGAACAGACAGAGG 59 47380753 47382670 TGTACAGCACATTGTTTCCG 59 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 1 1 1 68 14 86690146 86694863 GTACCTCACAGCTGAGGTG 60 86690096 86690115 GTGATGCGCTTTACTTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1310429 ENSRNOG00000000237 ENSRNOT00000000254 1 1 1 80 10 67749563 67750871 CGGAAGCAGATTGACACAG 59 67749501 67749519 TCACCAGAGGGAGTTTCTG 59 NA Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000026100,ENSRNOT00000044257 2 2 2 80 1 100329140 100329598 TGTCCACAAGAAAGCATCC 58 100329641 100329660 TCTGAGGTCATAGACTTGGA 57 NA Rattus norvegicus 81 LOC100364027 ENSRNOG00000049045 ENSRNOT00000074989 1 1 1 80 20 32027037 32027455 GGATTATATGGGAAGCACGG 58 32026692 32026710 GAACAGGGTCAAATGAGGG 58 NA Rattus norvegicus 81 LOC100364027 ENSRNOG00000049045 ENSRNOT00000074989 3 1 1 80 20 32027038 32027456 CGGATTATATGGGAAGCACG 59 32026693 32026711 AACAGGGTCAAATGAGGGA 59 NA Rattus norvegicus 81 Trim44 ENSRNOG00000005191 ENSRNOT00000007018 3 1 1 81 3 92186955 92225436 GATCCTAAAGTAACTCGAGACCA 60 92186896 92186917 CCTCATCAGCAATCACTTTCTG 60 NA Rattus norvegicus 81 Slc25a43 ENSRNOG00000012756 ENSRNOT00000017026 2 1 1 81 X 123362830 123382152 AAAGATGCAGGCTCAAAGC 59 123382197 123382215 TCTGAAGCAGTCAACTGCT 59 NA Rattus norvegicus 81 Mmp23 ENSRNOG00000017477 ENSRNOT00000066880 2 1 1 80 5 173080431 173080450 AATGTGGAGTGATGTTTCCC 58 173080301 173080390 GGGTAGAAACCTATCTTGAGG 57 NA Rattus norvegicus 81 Nanos1 ENSRNOG00000025060 ENSRNOT00000036203 3 1 1 259 1 282135103 282135122 CTACTGGAACGACTACCTGG 59 282135344 282135362 CAAATGGGTTCAGCTCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr535 ENSRNOG00000050080 ENSRNOT00000065152 3 1 1 60 3 74589941 74589960 ATTTCTGTGGCTCTCATGTC 58 74589900 74589918 AGGGCTAAGATTGCTGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000054828,ENSRNOT00000028651 1 3 3 103 1 221884359 221884377 CGGCAAATATCACGTGGTG 60 221884444 221888106 TATCAAAGTTCCCTGCCGG 60 NA Rattus norvegicus 81 Akr1cl ENSRNOG00000021735 ENSRNOT00000058312 3 1 1 80 17 69845348 69854194 GCAACCAGGTAGAATGTCAC 59 69845287 69845307 CAACGAGAACAATGTCTTTGG 58 NA Rattus norvegicus 81 Rnls ENSRNOG00000020705 ENSRNOT00000028098 2 1 1 80 1 251902031 251902052 CAGTACATCACCAGTAATCCCT 59 251864519 251901991 GCCACATTCTGATGACTCTG 59 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 1 2 2 80 8 116327754 116328261 CGCTTCAAGTATGGAGAACTG 59 116328300 116328321 CAGGACACATTGACTATGTAGG 58 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197,ENSRNOT00000001325 1 2 2 113 12 2203040 2203058 ATTGCTGGTCAGTCTCCTC 59 2203383 2203401 TTGTATCCTCACGGACGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mettl10 ENSRNOG00000017137 ENSRNOT00000023121 2 1 1 60 1 204836772 204836793 ATAACCTCCTGTAATTGGACCA 59 204831911 204836754 GTTCAAATCCTTCACTGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 Casc1 ENSRNOG00000027630 ENSRNOT00000030680 3 1 1 80 4 179445372 179446988 CAGATACACATCAAGGAAACCC 59 179445313 179445332 TCCTATTACCCGAAGCTCAC 59 NA Rattus norvegicus 81 Spink7 ENSRNOG00000032873 ENSRNOT00000040936 1 1 1 81 18 57920081 57920099 TCACAGCAACCTGTTTGTG 59 57918245 57919170 ATGTCACAGTCCACTGTGG 60 NA Rattus norvegicus 81 Klhl41 ENSRNOG00000007461 ENSRNOT00000009969 3 1 1 81 3 55914711 55914833 TATGCTATGATCCTGTGGCT 58 55914876 55914895 TGTGAGATCACATTATGGCC 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000076249,ENSRNOT00000035113 1 3 4 121 13 79046171 79048925 GCTATTAGAGAACTAGGCCTC 57 79049008 79049026 GACCAAAGAAAGGTGAGGT 57 NA Rattus norvegicus 81 LOC688754 ENSRNOG00000015161 ENSRNOT00000020399 1 1 1 80 18 51613655 51613673 GTGGACTTTGACATCGCTG 59 51613591 51613609 ATTCATCTGGTAGCCAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Rps6 ENSRNOG00000049025 ENSRNOT00000073270 2 1 1 81 5 105200064 105200085 CTTCGTACGTTCTATGAGAAGC 59 105199661 105200022 GGACCACATAACCCTTCCA 59 NA Rattus norvegicus 81 Pou4f2 ENSRNOG00000012167 ENSRNOT00000016422 2 1 1 61 19 33160692 33160710 GAGAGCTTGTCTTCCAACC 58 33161167 33161185 CCAGCAGACTCTCATCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Hes5 ENSRNOG00000013850 ENSRNOT00000018769 1 1 1 78 5 172364755 172364773 TCAGCTACCTGAAGCACAG 59 172364905 172364923 TAACCCTCGCTGTAGTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Ms4a5 ENSRNOG00000025857 ENSRNOT00000073770 1 1 2 91 1 227454476 227457484 TCTTAGGGTTCATTAACTCTGG 57 227452376 227452394 TAAATTCATCGCCTGGCTC 58 NA Rattus norvegicus 81 Snf8 ENSRNOG00000006500 ENSRNOT00000008964 3 1 1 80 10 83863574 83863595 ACTTCTATTATGAACTGGGCGT 60 83863635 83864874 CCAGAGTTATCAGACCTCCG 59 NA Rattus norvegicus 81 Gpr4 ENSRNOG00000016362 ENSRNOT00000021893 2 1 1 60 1 80135789 80135807 TGTACATCTGTACGCTGCC 60 80135831 80135849 TGGATCCAGTTGTCATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stap2 ENSRNOG00000047306 ENSRNOT00000075121 2 1 1 80 9 11069359 11069379 CCAGGATGAGAACTATGTGAC 58 11069419 11069687 GTAATGGCCTTGAGATCATCC 59 NA Rattus norvegicus 81 Dnajb9 ENSRNOG00000004006 ENSRNOT00000005363 2 1 1 86 6 64168229 64168247 TAGCCATGAAGTACCACCC 59 64167430 64168182 AGAGTGTTTCATATGCTTCTGC 59 NA Rattus norvegicus 81 Rsf1 ENSRNOG00000024194 ENSRNOT00000037050 1 1 1 80 1 162643720 162643738 TGAAGAAGCAGTCCTTCCA 59 162643779 162648559 CACAGAAGAATTAGTTCTGGGT 58 NA Rattus norvegicus 81 RGD1562229 ENSRNOG00000006356 ENSRNOT00000034584 2 1 1 88 14 114850329 114850347 GAGTGACTTCCAGAAGCCA 59 114835944 114850283 TAAGTGGAACTATCCCATAAGAAGG 60 NA Rattus norvegicus 81 Slc22a20 ENSRNOG00000022673 ENSRNOT00000065532 2 1 1 80 1 221330125 221339826 GAGCGGATGTTCTCTAACTC 58 221330064 221330082 TACCAGGTAGATGCTGAGC 59 NA Rattus norvegicus 81 Ccdc28a ENSRNOG00000053347 ENSRNOT00000085519 3 1 1 81 1 13390454 13390474 GAGTTAGAAGAACTTCCGGAG 58 13386910 13390414 ATTCTTCTAAGTCAGACAGCAG 58 NA Rattus norvegicus 81 Car12 ENSRNOG00000017766 ENSRNOT00000023952 1 1 1 80 8 72448127 72448145 GTTTGATGAGAGGCTGGTG 59 72457193 72458021 GAAAGGATGATACCCAAACTCAG 59 NA Rattus norvegicus 81 Map3k7 ENSRNOG00000005724 ENSRNOT00000007654 1 1 1 80 5 47203026 47204549 TGTATAATGTGCTGCACGG 58 47204593 47204611 GGGAACACTGTAGACACCA 59 NA Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 1 2 2 80 4 155333368 155333389 TGTACAAGACTGTACTCTGTCC 59 155333429 155334232 GTACATGCGACGTAAACTGG 59 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000046639 3 1 2 80 14 14382832 14382853 ACTACGGCTGCTCTTTATACTC 60 14365146 14379747 CATTAGGGAACCCAGTTATCCA 60 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799,ENSRNOT00000027574 1 2 2 80 1 267049439 267049458 ACCATTGCTGAATTCCAGTC 59 267048495 267049397 GTTCTTGTCGATGACCTCTG 58 NA Rattus norvegicus 81 Mapk3 ENSRNOG00000053583 ENSRNOT00000087625 2 1 1 80 1 198196370 198196560 TGCGACCTTAAGATCTGTG 57 198196603 198196622 ATACTCGGTAAGAAAGCCAG 57 NA Rattus norvegicus 81 Tmem62 ENSRNOG00000023874 ENSRNOT00000030065 1 1 1 80 3 112920901 112925899 CAACTATTACAGGAAGTACTCCG 59 112925939 112925957 GAGTAGTTGCCGAAAGGAG 58 NA Rattus norvegicus 81 Nxph2 ENSRNOG00000040333 ENSRNOT00000062080 1 1 1 60 3 307321 307340 ACGTTGGTTAGAAATGTGGT 58 307360 307381 GTTTAACAAAGAGATGCACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa7 ENSRNOG00000014004 ENSRNOT00000018849 1 1 1 80 1 29369042 29369061 TGAGAAGGAAGAACTGACCA 58 29369102 29377176 TCCTCAACTGTGATGATCTCC 59 NA Rattus norvegicus 81 Ahrr ENSRNOG00000014721 ENSRNOT00000019806 3 1 1 80 1 31681068 31681086 TCTGCAGACAGCTACACTG 59 31681130 31683123 CGGTATTGTCTGTGTCAGC 59 NA Rattus norvegicus 81 Prkd2 ENSRNOG00000016434 ENSRNOT00000022360 1 1 1 80 1 78783725 78789921 CCTTATCACGCAGATTCTGG 59 78789961 78789982 ACATTCTCTGGTTTCAAGTCAC 59 NA Rattus norvegicus 81 Olr1433 ENSRNOG00000038413 ENSRNOT00000058503 1 1 1 80 10 44293691 44293755 CATCTACATGTACATGCAGCC 59 44293794 44293815 GTGACAATGTTGTAGAAGAGGG 59 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 1 2 2 64 2 232129926 232135437 CACTGGAAGACTCTCAGGC 60 232135464 232135483 GTCTCTTCTGTATCAGCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911674 ENSRNOG00000005408 ENSRNOT00000007490 3 1 1 192 10 45065461 45071528 CCTCAACGGATGTCATGAC 58 45064553 45064571 CTTCTGGATGTACCAGCAG 58 NA Rattus norvegicus 81 Sohlh1 ENSRNOG00000033983 ENSRNOT00000051729 1 1 1 101 3 3293191 3293209 GAGCCAAGCTACTGAGAGG 60 3292519 3293126 CTGGAGGACTCTGACTCAC 59 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000027791 ENSRNOT00000038497 2 1 1 60 14 52662088 52662106 GCCAGTTCATCTGAAAGGC 59 52662130 52662148 CAGAAGCATTGTGGCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 3 1 1 112 13 36265400 36265418 ATATACCTGTCCCTGGGTG 58 36258698 36265325 GACTGCACAAAGCTGAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Rchy1 ENSRNOG00000002546 ENSRNOT00000003470 1 1 1 80 14 17621887 17626602 TGTGGGATTTGTAGGATTGG 58 17626645 17626663 TCGAAGAGTCATGGCTAGG 59 NA Rattus norvegicus 81 Mir211 ENSRNOG00000035648 ENSRNOT00000053771 3 1 1 63 1 125042158 125042176 CTTTGCCTAGGCCTCTGAG 60 125042203 125042221 GCAGTAGAGGTGACCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grb7 ENSRNOG00000006990 ENSRNOT00000009299 3 1 1 80 10 86407333 86407354 TATAAGAATTATCAGCAGGCCC 58 86407394 86407507 ATCTGAGACACTCCTCAAGG 59 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907,ENSRNOT00000074811 2 2 2 80 X 85339072 85359091 CACCTTCTAAGCAATCGTCTG 59 85359133 85359151 TGATGCAGGAGGTAAGCTG 60 NA Rattus norvegicus 81 Bdh1 ENSRNOG00000001736 ENSRNOT00000002366 3 1 1 80 11 72581598 72587681 TCCTGAGAAGGGAATGTGG 59 72581536 72581555 GTCTCCATGCTAGTGAACTC 58 NA Rattus norvegicus 81 Plxdc1 ENSRNOG00000021536 ENSRNOT00000043561 2 1 1 80 10 85872483 85874069 CTCTTCTTCATTGAGCGGC 59 85872421 85872439 CTCTGTGTAGGTGGAGTGG 59 NA Rattus norvegicus 81 Nomo1 ENSRNOG00000021118 ENSRNOT00000028680 2 1 1 80 1 102017467 102023091 CTCATCGAGATAAAGTTGTACACC 59 102023126 102023148 CATAAAGTAGCCGTTGTTAGGAG 59 NA Rattus norvegicus 81 Ercc6l ENSRNOG00000003208 ENSRNOT00000004310 1 1 1 115 X 72022227 72034016 AGAGTTACCTGAGATATTCGCA 59 72022133 72022151 GATCACCTTCTTGGTGGGA 59 NA Rattus norvegicus 81 Nrtn ENSRNOG00000048651 ENSRNOT00000072592 2 1 1 170 9 10305522 10305540 TGCTGTCTGTCTGGATGTG 60 10306131 10306149 AAAGTTCTCGAAGCTCCAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368 1 1 2 96 18 52033277 52036399 ATTCACAAAGCACCCATGC 59 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA Rattus norvegicus 81 Dis3l ENSRNOG00000010537 ENSRNOT00000014071 2 1 1 80 8 69780783 69780802 CACATAGCTGATGTCACCCA 60 69780215 69780740 GTAGTAAGTGGTGGCCCTC 60 NA Rattus norvegicus 81 Pkd1 ENSRNOG00000010771 ENSRNOT00000015092 1 1 1 80 10 13931241 13931260 TGTCCCACAACCTACTTCAG 59 13931301 13931435 TATTGCTTAAGTCCAGCTCCA 59 NA Rattus norvegicus 81 LOC100365887 ENSRNOG00000047639 ENSRNOT00000072741 3 1 1 60 3 76256067 76256087 GTCCTATTGAGCTTCACAGAC 59 76256027 76256047 AGAGAAAGACTAGGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam126b ENSRNOG00000025079 ENSRNOT00000037660 3 1 1 80 9 65436602 65441476 GACTCAAACAATGAGCTCCT 58 65436541 65436560 CCTCTTAAGTCGAACCTCAG 58 NA Rattus norvegicus 81 Snip1 ENSRNOG00000024889 ENSRNOT00000037510 1 1 1 80 5 143064751 143067953 CAAAGTGAAGCAGGAACGG 60 143067995 143068015 TGCTCCTGTTCTGATAACTCC 60 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000046594 ENSRNOT00000068050 1 1 1 80 10 105164761 105164780 AATCTACCTGTGTTCCAGCC 60 105164215 105164506 ATTGAATCCCTTGAAACGTTCC 60 NA Rattus norvegicus 81 Atpif1 ENSRNOG00000013300 ENSRNOT00000018038 1 1 1 84 5 150719829 150722992 GGATCGGTACTTCCGAGAG 59 150719763 150719783 CTTCGAATGGTGGTCAATCTC 59 NA Rattus norvegicus 81 Tmem57 ENSRNOG00000056156 ENSRNOT00000079536 2 1 1 80 5 153133259 153134501 CAGAACAAGCTACACAATGCT 59 153133199 153133217 AGCTTTCAGCCTCTTCTCC 59 NA Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 3 2 2 81 10 43751524 43751542 GATCTTTCCGCACTAGCAG 58 43751586 43751714 CCACATATCTCACACTGCAG 59 NA Rattus norvegicus 81 Zbtb8b ENSRNOG00000026898 ENSRNOT00000037106 3 1 1 74 5 147634798 147634819 GTTCAGAACGACTGGTATAGAG 58 147630928 147630946 GAAAGGACACTTGTGGAGC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07041140.1 ENSRNOG00000006459 ENSRNOT00000050793 2 1 1 111 X 120314469 120314488 TAAAGACATTGTGGCTGAGG 58 120314562 120314583 GCACCTGTATTTCTTGATTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Car2 ENSRNOG00000009629 ENSRNOT00000013354 2 1 1 81 2 88111622 88111641 TTGCTTCCAAGAGCATTGTC 59 88105018 88111579 TCTTTCAGCACTGCAAAGTC 59 NA Rattus norvegicus 81 Tlr12 ENSRNOG00000042455 ENSRNOT00000065640 1 1 1 99 5 146792335 146792701 AGGAGGAAAGAAAGGTGGA 58 146792254 146792272 TTAGGAAAGCCTTCCCTCC 59 NA Rattus norvegicus 81 Rxfp2 ENSRNOG00000000897 ENSRNOT00000001197 2 1 1 80 12 6048250 6053124 CAGAACTCAGAAAGATATTCCTCC 59 6048193 6048216 GTAGGTTATGTAATCCAAGGAACG 59 NA Rattus norvegicus 81 Rxfp2 ENSRNOG00000000897 ENSRNOT00000001197 3 1 1 80 12 6033665 6036909 CAACTTCAGTCTCTAGACCTG 58 6033605 6033623 AGAAAGGTTCTTCATGGGC 58 NA Rattus norvegicus 81 Wdpcp ENSRNOG00000054331 ENSRNOT00000092168 2 1 1 80 14 106495798 106496662 ATCTACCAGTATCAGCAGCA 58 106499817 106499837 GTGTCCAAGGATAATCTCGTG 59 NA Rattus norvegicus 81 Rps2-ps1 ENSRNOG00000058852 ENSRNOT00000078525 3 1 1 60 20 3159973 3159991 CCACCCATTAAGGAGTCTG 57 3159931 3159949 ACCTCATCCTTAGGGATGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abi2 ENSRNOG00000017707 ENSRNOT00000050179 2 1 1 80 9 67282017 67282036 ACGATGATGGTTGGTATGAG 58 67282078 67282099 ATAATGCATGATGCTCAACG 57 NA Rattus norvegicus 81 Zmym4 ENSRNOG00000012397 ENSRNOT00000016992 3 1 1 80 5 144969352 144996060 CCCGAAAGAGGTTTGAACAG 59 144942681 144942702 ACATTTCTGTATCCATGACACC 59 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000038480 2 1 2 80 7 143601534 143603431 CATTGACAAGGTACGCTTCC 59 143601473 143601491 GATGTCTTCTGCTGTTGCA 59 NA Rattus norvegicus 81 Calm3 ENSRNOG00000016770 ENSRNOT00000022603 2 1 1 81 1 78845100 78845118 TGGCCAGAAAGATGAAGGA 59 78844899 78845056 TAGCCATTCCCATCCTTGTC 60 NA Rattus norvegicus 81 Chpf ENSRNOG00000020038 ENSRNOT00000027165 1 1 1 97 9 82671922 82671940 AATGACATCGTCAGTGCTC 58 82671357 82671861 TAGTGCATTCCCTCATGGT 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 2 3 3 93 10 13321421 13323536 TCATTAAGGGCATCCAGCT 59 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Olr140 ENSRNOG00000049204 ENSRNOT00000050606 3 1 1 60 1 169209218 169209236 TACCACACTCCCTACTGTC 58 169209260 169209278 CTCAAAGCTGATTTCCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc5 ENSRNOG00000008850 ENSRNOT00000011741 2 1 1 80 15 27708481 27712046 AAGTACTTGGTTCTGTCCAG 57 27708420 27708438 GGCTGTAATCAGGAGTCAC 58 NA Rattus norvegicus 81 LOC499219 ENSRNOG00000024789 ENSRNOT00000034019 1 1 1 78 1 169145703 169145721 AGAGAAGAGCCTTGTTGGG 59 169151922 169151940 CTTCACCTTCATGCTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 2 2 2 80 7 25972088 25972111 CTCCAGTTCTCAGCTTATTAACAG 59 25972147 25980642 GTGGTAACACCTGATCTTTGAG 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 3 2 2 80 7 25972146 25980641 TCTCAAAGATCAGGTGTTACCA 59 25980681 25980700 ACCAGCTTATTTCTCACGGT 60 NA Rattus norvegicus 81 Eif2s3y ENSRNOG00000060048 ENSRNOT00000088593 1 1 1 80 Y 919136 919841 GTATTAAAGGTGGGCCAAGAG 59 919881 919901 TGGTTTACACATAAGCTTCCC 58 NA Rattus norvegicus 81 Atp1a3 ENSRNOG00000020263 ENSRNOT00000027497 1 1 1 80 1 81864938 81864956 ATGTCCATGATCGACCCTC 59 81864792 81864895 CATGATGACCTTGATGCCTG 59 NA Rattus norvegicus 81 RGD1559441 ENSRNOG00000024953 ENSRNOT00000042810 1 1 1 80 5 24883798 24892485 TCAGTAAAGCAGAGATGGGA 58 24892527 24892546 CATAGGATTTGACGGTGCTC 59 NA Rattus norvegicus 81 LOC100912290 ENSRNOG00000048735 ENSRNOT00000072147 1 1 1 60 4 170092743 170092761 ATTACCAAGCCCGCTATCC 60 170092701 170092719 GACCTGAGATACGCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mum1l1 ENSRNOG00000030475 ENSRNOT00000041044 2 1 1 80 X 110406681 110406700 AAGACCTGTTTGGAAGTCAG 58 110406741 110407386 TCTGGAAGATACTCTGTTTGG 57 NA InUTR Rattus norvegicus 81 Rn60_20_0028.1 ENSRNOG00000059667 ENSRNOT00000087688 2 1 1 60 20 2791217 2791235 GCTTCCTTCTCTGGGACTC 60 2791175 2791194 TCATCGAGACATTTCCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bbs9 ENSRNOG00000015189 ENSRNOT00000020481 3 1 1 80 8 23782361 23786979 AACGACTAGTTGTGGACTG 57 23787022 23787041 ATGCTGACTGGTTTAAAGGA 57 NA Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000076247,ENSRNOT00000021956 3 2 2 62 9 43131311 43131331 TTTGGACCCTTCAAAGATGTG 59 43131120 43131138 TTGGGAACAACAGGTCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Vash1 ENSRNOG00000010457 ENSRNOT00000014017 2 1 1 80 6 110633732 110634372 CTGTGATCCTGGGAATTTACC 59 110634410 110634432 CTGAGAAATAGGTCTTGAAGCTG 59 NA Rattus norvegicus 81 Pycr1 ENSRNOG00000036682 ENSRNOT00000054949 2 1 1 121 10 109820085 109820103 GGAAGATGGCAAGCTTGTG 60 109819874 109820000 CTGTGAAAGCATAGGCAGG 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342,ENSRNOT00000030352 1 2 2 81 4 22654127 22655960 CCATTCCCTAAAGGCAAGTG 59 22654065 22654085 CTTTCTTGCTCTCCTCTTCAC 59 NA Rattus norvegicus 81 Catsper2 ENSRNOG00000023064 ENSRNOT00000030019 2 1 1 80 3 113370269 113370288 CTCTCAAACTGTTTGCACGA 59 113369937 113370227 GGAATGTCATGCTCTTCAGG 59 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 1 2 2 75 4 82159734 82159752 GAAGAAGATCCACGTGAGC 58 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rgag1 ENSRNOG00000049853 ENSRNOT00000074676 1 1 1 60 X 114377870 114377888 GCCATGGAGAATGAACTGG 59 114378506 114378524 GTTTGGGAACATGCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Tbkbp1 ENSRNOG00000009370 ENSRNOT00000012462 2 1 1 80 10 85083392 85083411 AGATGATCCAGGCTTACGAG 59 85082322 85083349 CTACCAGAGCTCGCATCTC 60 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 1 2 2 80 5 50061062 50065944 CTGCTCTTATTCTTGGCGT 58 50061000 50061021 TGACATTATTGTGAAGGGTCTC 58 NA Rattus norvegicus 81 Ccdc175 ENSRNOG00000004774 ENSRNOT00000006346 3 1 1 80 6 94882055 94886229 TCTCAAATACAGCAGGTGG 57 94881993 94882012 GAGCGTGTTCAGTCTATCTC 58 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430,ENSRNOT00000028570 3 2 2 89 1 101717013 101717319 AAAGGAGAAGTGCAGTTTGG 59 101716943 101716966 GTAGGTGATAAACAGGAAGTTCTC 59 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 1 1 1 67 16 21085680 21087803 GTAAAGCTGGATCTAGAAGGG 58 21085633 21085651 AAAGTCATCTTGTAGCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Fzr1 ENSRNOG00000004169 ENSRNOT00000005624 1 1 1 98 7 11209200 11209346 CAGACAACGGCAAAGATGG 60 11209408 11209426 GATCCTCTGTCTGTGGGTC 59 NA Rattus norvegicus 81 LOC102547811 ENSRNOG00000046212 ENSRNOT00000075433 2 1 1 80 19 389940 389961 AACTTAGAGATGGAGAACACTG 58 390001 390651 GAGCAGGTTTCTAGAGAAGG 57 NA Rattus norvegicus 81 Rpl18a ENSRNOG00000018795 ENSRNOT00000025421 2 1 1 80 16 20294997 20295017 CAGATCATGAAGGTGGAAGAG 58 20295059 20295169 CTTGATCTTGGAGTCGTGG 58 NA Rattus norvegicus 81 Adad2 ENSRNOG00000015690 ENSRNOT00000021072 2 1 1 80 19 52260333 52260354 GTATATCCAGAAGCAGTTGGAG 59 52261039 52261170 ATTGTCTCTATGCTGAGAGGT 58 NA Rattus norvegicus 81 Cep295nl ENSRNOG00000033143 ENSRNOT00000046213 1 1 1 98 10 107376574 107376592 AAGTTATCATCACGGGCCA 59 107365137 107365155 CTTCATCTTCGGAAGAGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pmm1 ENSRNOG00000005358 ENSRNOT00000007164 2 1 1 83 7 123185158 123185176 AAGATCCGGGAGAAGTTCG 59 123184381 123185112 GCTTATCATACCTCCTCGGG 60 NA Rattus norvegicus 81 Olr586 ENSRNOG00000030946 ENSRNOT00000047110 1 1 1 60 3 75907152 75907172 GACATCTGTTATTCCACTGCT 58 75907194 75907212 TGCATTTGGTCAGTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837,ENSRNOT00000090984 3 2 2 83 7 123095896 123100496 ACCATTCAGGAGAAGGATAGAG 59 123095834 123095852 TTTGCGCTCATAGAACAGG 58 NA Rattus norvegicus 81 Btbd9 ENSRNOG00000000540 ENSRNOT00000000649 1 1 1 80 20 9195680 9195701 GATCACTCACATTACCTGTGTC 59 9019842 9195642 CCCAACTATTCGAATGTACCTG 59 NA Rattus norvegicus 81 Tmem147 ENSRNOG00000021006 ENSRNOT00000028514 2 1 1 81 1 89178398 89178507 TCCAACATCAGTCTGGTCC 59 89178335 89178353 GGAAGGTGTGGTACAGGTC 60 NA Rattus norvegicus 81 Mfrp ENSRNOG00000039107 ENSRNOT00000085578,ENSRNOT00000059813 1 2 2 80 8 48438450 48438553 TGAGCTGAGCAAGACAGAG 59 48438596 48438615 TTCTGTAATGCTGGTGGAGG 60 NA Rattus norvegicus 81 Ikzf3 ENSRNOG00000007200 ENSRNOT00000009454 3 1 1 81 10 86423028 86433573 ATTCATTGGTGAGAAGCGC 59 86422965 86422983 CTGCATCATCTCGTTCTCC 58 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325,ENSRNOT00000073757 1 2 2 80 12 22446707 22447522 CCACTGATAAGACTATCACACC 58 22448425 22448443 TGAAGCAAGCTCAATGACC 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000012167 3 1 2 80 15 70256062 70256081 CAGTATGATGGCAGATGTGG 59 70253341 70256022 TCTAACACTTCTTCAAGGATGC 59 NA Rattus norvegicus 81 Mir3099 ENSRNOG00000046704 ENSRNOT00000070831 2 1 1 60 1 70136997 70137018 ATGTTTCAGTATGCACATAGGC 59 70136958 70136976 CCGATGCTCTCATCTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498222 ENSRNOG00000004341 ENSRNOT00000005791 3 1 1 80 13 47460411 47463910 CACCCACTCTGGATCTAGTG 59 47463953 47463971 GTCTTCTCCAGGAAGAGCA 59 NA Rattus norvegicus 81 Parp9 ENSRNOG00000023463 ENSRNOT00000030975 1 1 1 80 11 67746062 67748772 CATTGAGCTGCAAACAACAG 59 67746001 67746019 ATCGATTGTGCCACTTGTC 59 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370,ENSRNOT00000083055 2 2 2 80 1 163081076 163082901 TGGTGAATTCTGGATGACCT 59 163081015 163081035 TAGGACGTATTAATCAGGCGG 60 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370,ENSRNOT00000083055 3 2 2 80 1 163078053 163080087 TCTATAAGGTGGAAGAGAACCG 59 163077994 163078016 GAGAATTGATGTAGATGGAGCTG 59 NA Rattus norvegicus 81 Tcp11x2 ENSRNOG00000011034 ENSRNOT00000052009 1 1 1 80 X 106109265 106109383 AATTCCCTGAGACTCTGCTG 60 106109204 106109223 AGGCTAGAATGGTCAAGTGG 60 NA Rattus norvegicus 81 Proser2 ENSRNOG00000045553 ENSRNOT00000073933 2 1 1 80 17 76100870 76134348 GTTTCACGATGGATGACGA 58 76134389 76134410 CGAGAGTCTCTTCAAAGAACAG 59 NA Rattus norvegicus 81 Alb ENSRNOG00000002911 ENSRNOT00000003921 1 1 1 80 14 19182294 19182313 AAATATGAAGCCACACTGGA 57 19181163 19182252 CTGAAATTCTGCAAGCACTG 58 NA Rattus norvegicus 81 Mir6321 ENSRNOG00000049481 ENSRNOT00000073362 3 1 1 60 14 21097411 21097431 GTGAGTTCTATGAAGCCTCAG 58 21097371 21097394 CATAGAACTCACTGCAATAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332,ENSRNOT00000001437 2 2 2 80 12 13154978 13154996 GATCGTCCTCCTTGTTCTC 57 13148873 13154935 CAAATGGTTCCTCTCATGCT 58 NA Rattus norvegicus 81 Tmem262 ENSRNOG00000047431 ENSRNOT00000073942 2 1 1 82 1 221444336 221444458 GCTTTGACCATCCTGATCCT 60 221444502 221444521 TCCTCTCGGTAATTGATGGC 60 NA Rattus norvegicus 81 Olr856 ENSRNOG00000057199 ENSRNOT00000084932 3 1 1 60 5 137725949 137725968 GTATGTTGCTATCTGCCACC 59 137725908 137725926 GAGACACATCCCACGACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk13 ENSRNOG00000047363 ENSRNOT00000075794 1 1 1 85 6 123975218 124075604 ACTACCATAGGGTTCGGGA 59 124075653 124075671 CTCGCACATCCAATGAGAC 59 NA Rattus norvegicus 81 Olr152 ENSRNOG00000017211 ENSRNOT00000023119 3 1 1 60 1 169553324 169553342 TATGTGGCTATCCCTCCTG 58 169553364 169553384 GGATCTGCTTGGTCTTTACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npffr2 ENSRNOG00000003067 ENSRNOT00000004153 1 1 1 80 14 20149784 20153981 ATAGCCGTGGACAGATTCC 59 20149722 20149741 CACGATCATGACAAAGGCTG 60 NA Rattus norvegicus 81 Tc2n ENSRNOG00000004754 ENSRNOT00000006371 2 1 1 80 6 125568179 125568198 AAACTTCCTGGTTCTCCTGG 60 125553489 125568138 GTCATGTCTCTGGATGAATCG 59 NA Rattus norvegicus 81 Mir216a ENSRNOG00000035514 ENSRNOT00000053637 1 1 1 60 14 113112159 113112177 GCAACTGTGAGATGTCCCT 60 113112199 113112219 GCTCTGTTTAGCATAATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snta1 ENSRNOG00000016062 ENSRNOT00000021715 2 1 1 86 3 149901782 149901801 GAAGATTTGTCCTCTGCCAC 59 149880955 149901739 CATATACTTAACCTCCAACACAACC 60 NA Rattus norvegicus 81 LOC100362142 ENSRNOG00000025580 ENSRNOT00000035048 2 1 1 80 3 164345239 164346227 GTTCCAATGGAGTGGTGGA 60 164345177 164345196 GCAGGATGACTTTGATGCTG 60 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 1 2 2 81 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220010 106220029 CACCAGTTTGTTCAACACAG 58 NA Rattus norvegicus 81 Lsp1 ENSRNOG00000020300 ENSRNOT00000054864 1 1 1 80 1 215658332 215658482 TCATCCACCATCAAGAGCA 59 215658525 215658544 GAGCACTTTCTCGTACTTCC 58 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 3 2 2 95 3 175477710 175477730 GGTGGTAGACTACCTACTGTG 59 175476317 175477653 CTGTAGGAGACAGCTCGAG 59 NA Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000078451,ENSRNOT00000001085 3 2 3 142 20 3399672 3399690 TCAGAGGTCGCTCTATGTG 59 3399087 3399105 GGACAAAGCAGAGGAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000089257 2 1 3 80 20 3399696 3399714 GACATCACGGTACTTTGGC 59 3398697 3399655 ACATGGTAATAAACCTGCAAGG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431,ENSRNOT00000031653 2 2 2 80 12 2214077 2215092 ACAACAAGTCAAGTTCAAGC 57 2215134 2215153 ACATACAGCATCATGATGCT 58 NA Rattus norvegicus 81 Mtrf1l ENSRNOG00000018773 ENSRNOT00000025398 1 1 1 80 1 42476686 42476704 AGGTTATACAGCATGCGTC 58 42476022 42476644 TCTTCCTTTAGTTCCAACCTG 58 NA Rattus norvegicus 81 Rhbdf2 ENSRNOG00000011459 ENSRNOT00000068026 3 1 1 81 10 105577783 105577802 AACAGAGGCGTGTATGAGAG 60 105577596 105577739 GGTGGATGAGGTCAATCGA 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076907,ENSRNOT00000003851 2 2 3 96 13 78956170 78957113 AAGTGTCAAAGCCAGTACG 58 78934645 78934663 CGGTCGAATGTTGGTACAC 59 NA Rattus norvegicus 81 Olr608 ENSRNOG00000005950 ENSRNOT00000007796 3 1 1 60 3 76278899 76278920 GAATAAATCCCAAACTCCACAC 58 76278860 76278880 TCAACAAAGGATAAGTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a5 ENSRNOG00000005158 ENSRNOT00000043611 2 1 1 80 3 117347153 117347171 GTGATTGTGCTGTGTATGC 57 117347213 117348844 CTCCTTCGTACCAGTAAACTC 58 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 1 2 2 80 6 111077267 111077702 CACAATGACAGCCTAACCT 58 111077746 111077764 TTCTGCCTCCAAGTAAACC 57 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000020729,ENSRNOT00000055542 1 2 2 99 4 178069484 178075008 AAGATACTGGGATCTCGTTGG 59 178069405 178069423 GGTACTTCTCCAGGTGCTG 60 NA Rattus norvegicus 81 Strc ENSRNOG00000014845 ENSRNOT00000020130 2 1 1 80 3 113341582 113342626 CACAGGAAGTGACTTTGGC 59 113341520 113341541 GAGTGGAGATGAATGACTTCAG 59 NA Rattus norvegicus 81 Timp2 ENSRNOG00000003148 ENSRNOT00000004290 1 1 1 94 10 107341489 107348944 ATCTAATTGCAGGGAAGGC 58 107341413 107341431 CTTCTGGGTGATGCTAAGC 58 NA Rattus norvegicus 81 Ccdc90b ENSRNOG00000009462 ENSRNOT00000012781 1 1 1 80 1 157411366 157411467 CAGCTGATTAATGAAACCAGTC 58 157411507 157411526 CATATCTGTCACTCTGCTCC 58 NA Rattus norvegicus 81 Fev ENSRNOG00000017856 ENSRNOT00000024190 1 1 1 116 9 82145938 82146631 GTACCTACCAGATCCCGTC 59 82144125 82144143 AGAAACTGCCACAACTGGA 60 NA Rattus norvegicus 81 Panx3 ENSRNOG00000031675 ENSRNOT00000042717 1 1 1 80 8 40136957 40136976 GTCAAGTTCGTTACTGTGGG 59 40134615 40136914 GATCGGAGACCCTGATGAG 59 NA Rattus norvegicus 81 AABR07068187.1 ENSRNOG00000048388 ENSRNOT00000074236 1 1 1 75 9 88749379 88749397 AGAGTATGCACACTGGCTG 60 88748921 88749340 GAGGAGCACTCTGTTCTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC103693685 ENSRNOG00000060686 ENSRNOT00000086988 1 1 1 60 13 92466463 92466481 AGACAAGGAGCAAGCAGAG 60 92466503 92466523 AGGCAACAGAATCATTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Batf3 ENSRNOG00000003716 ENSRNOT00000004962 1 1 1 96 13 109715829 109715848 CAGGAAGGTTCGAAGAAGAG 58 109715907 109724646 CTCATGTTCCTCGTGAAGC 59 NA Rattus norvegicus 81 Olr1386 ENSRNOG00000046838 ENSRNOT00000047186 1 1 1 60 10 34383491 34383510 CATGCTAGTCTTCACAGTGG 58 34383531 34383551 AGTGTAGATGAGGAGGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560242 ENSRNOG00000036615 ENSRNOT00000054776 1 1 1 80 1 241424300 241460636 GTATTCATGGCACCGTAACAG 60 241424240 241424258 TTACACAGGTTTGTCGCCA 60 NA Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794,ENSRNOT00000065614 2 2 2 92 20 30942727 30942745 TTAATGCCTACCTTCGCCT 59 30940668 30940686 CATAGATGCCAGCTTTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Smyd1 ENSRNOG00000006776 ENSRNOT00000009184 1 1 1 80 4 99077825 99077843 GAAGTCCTCTCCTACCTCC 58 99076321 99077784 GTAGAGTTTCATGTAGCCATCC 59 NA Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 2 2 2 80 2 197738366 197740041 CTAGACAGAAAGGTCCTGC 57 197740084 197740103 TGCTTTAATGTGTTTGAGCG 58 NA Rattus norvegicus 81 Cmpk2 ENSRNOG00000007690 ENSRNOT00000052003 3 1 1 80 6 45689153 45691580 CTGTTATCGTAGACAGGTACTG 58 45691621 45691639 GTAGGTACTGTAGGCCTCC 58 NA Rattus norvegicus 81 Wdhd1 ENSRNOG00000011167 ENSRNOT00000015100 1 1 1 80 15 24048638 24050559 GACCGGGAAGTTTCTAGCA 59 24048576 24048595 AGGTCAAACGGATTACTCCA 59 NA Rattus norvegicus 81 Cd8a ENSRNOG00000007178 ENSRNOT00000009515 1 1 1 96 4 99239162 99239269 ACTGCTGGATGTTATCACTAGG 60 99239326 99239344 TGTTAGCTTCACCTCCTGG 59 NA Rattus norvegicus 81 Mtm1 ENSRNOG00000002516 ENSRNOT00000062057 1 1 1 80 6 18827083 18829744 TTGATATCACCTGCAAAGACC 58 18829786 18829804 CGTCAAAGATGTCCCTCCT 59 NA Rattus norvegicus 81 Olr609 ENSRNOG00000050679 ENSRNOT00000051968 2 1 1 60 3 76288599 76288619 CTCCTTCTCTACTGTGTACCT 58 76288559 76288577 CAGTTGCCACTTTGACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr562 ENSRNOG00000037834 ENSRNOT00000057479 3 1 1 60 3 75465881 75465900 ACAGATAGGGCAGACATCAC 59 75465922 75465941 GTTGATTTCGTTGGAACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699,ENSRNOT00000040559,ENSRNOT00000044778 3 3 3 80 1 3965529 4009700 CTTTAAGGCTCTTTGGTCGTC 59 3965469 3965489 GGAACTGGAGTTGAATCACTG 59 NA Rattus norvegicus 81 Arhgap36 ENSRNOG00000007552 ENSRNOT00000068717 3 1 1 83 X 136491711 136491984 GGTGATTGAGCTTCGTGAG 59 136492030 136492049 AGTTCAGCCACATCATTGAC 59 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 3 2 2 80 20 13103111 13103811 TATTGGGCCTGAGAACCTG 59 13103855 13103873 TCTGCATTATGTCTGCGTG 58 NA Rattus norvegicus 81 Cxcr2 ENSRNOG00000014269 ENSRNOT00000019109 3 1 1 110 9 81427830 81432907 CTACAGCAGGATTAAGTTTACCTC 59 81432971 81432994 GGGTCAGAACTGTAATTGTAACTG 60 NA InUTR Rattus norvegicus 81 Zfp219 ENSRNOG00000011544 ENSRNOT00000015418 2 1 1 64 15 28403723 28403741 ACCTCAAAGTGCATCTTCG 58 28403442 28403460 ATAGTCGCAGTGTGGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Olr493 ENSRNOG00000032730 ENSRNOT00000045888 1 1 1 60 3 74790168 74790189 CTACTTGTTCTTGTGTCCTACC 59 74790129 74790147 CAGCAGAGTTCATCCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 3 2 2 80 X 72686382 72686542 TCCAAGTCAGGGAACAAGG 59 72686586 72686604 GGCGTCTCTTTATTGGTGC 59 NA Rattus norvegicus 81 Smco2 ENSRNOG00000026883 ENSRNOT00000034051 2 1 1 80 4 181243369 181243388 AGGAACATCAGCTGACTGAG 60 181243431 181249103 TTTCAGCAACTTCCTTCGC 59 NA Rattus norvegicus 81 Tob2 ENSRNOG00000050500 ENSRNOT00000071998 2 1 1 256 7 123088213 123088231 AATCACATGAGCTCGGTCC 60 123081540 123081558 CACTTTGATCTCCAGCTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krcc1 ENSRNOG00000007124 ENSRNOT00000009327 2 1 1 114 4 99143850 99145488 GCCTGATAACGATAATCCCT 57 99145565 99145583 CTAAGCCTCTGGCTTTCTG 58 NA InUTR Rattus norvegicus 81 AABR07030995.1 ENSRNOG00000058822 ENSRNOT00000074598 2 1 1 80 10 111775494 111776911 AGGAGAAACATTGGTTCCCT 59 111776953 111776972 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 2 2 3 121 20 40667641 40701727 CCACAGATTTACTCTGTGATGAG 59 40701808 40701826 CTCTGGATGTCGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Sh2d1a ENSRNOG00000006263 ENSRNOT00000008444 2 1 1 81 X 128911240 128916661 TCTTGGAGTGCTGAGACAG 59 128916703 128916724 GCTTCTGAAATGCTGAAATGAG 59 NA Rattus norvegicus 81 Cited1 ENSRNOG00000003189 ENSRNOT00000077678 1 1 1 81 X 72130267 72132079 AGTATACCGACCAACAGCC 59 72130204 72130223 GTTGGCATTTCAGAGTCTGG 59 NA Rattus norvegicus 81 Cdc123 ENSRNOG00000017770 ENSRNOT00000024016 1 1 1 80 17 76410673 76410693 AAGAAGGAGCATGTTAGTCAC 58 76410734 76413678 GAGGATGACACTCTTGATGG 58 NA Rattus norvegicus 81 Igfbp5 ENSRNOG00000017206 ENSRNOT00000023530,ENSRNOT00000079493 1 2 2 80 9 80154621 80155296 CTACAAGAGAAAGCAGTGCA 58 80154560 80154579 AGCTTCATCCCATACTTGTC 57 NA Rattus norvegicus 81 Dnah3 ENSRNOG00000050426 ENSRNOT00000073205 2 1 1 80 1 189852845 189852864 CTTCAAGTCTCCCTTAGGTC 57 189850954 189852803 CATGAGGATGTAGTCAACGA 57 NA Rattus norvegicus 81 Enam ENSRNOG00000003672 ENSRNOT00000049462 2 1 1 80 14 21197991 21201152 CAGCAATGAAGAAGGAAATCCT 59 21197932 21197955 ATCTCTTCTGAGTAATAAGGACGG 60 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 3 2 2 88 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976085 56982455 CTCTTAAGATCTGTGCATATGACTC 59 NA Rattus norvegicus 81 Pnpla2 ENSRNOG00000047551 ENSRNOT00000025826 2 1 1 80 1 214000993 214001113 CTTAGGAGGAATGGCCTACTG 60 214001155 214001173 CTCTGCATCCTCTTCCTGG 60 NA Rattus norvegicus 81 Sytl2 ENSRNOG00000049878 ENSRNOT00000042163 1 1 1 80 1 156351525 156354334 CATTTCTTCAAGATGAGAGCGA 59 156351466 156351487 TCTTCTTGTATCTCCTGAGCTG 59 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000049536 ENSRNOT00000050438 3 1 1 162 12 7186699 7186787 AATTGAAGGTGTTTATGCCCG 60 7186557 7186575 CATGCCACTGTTTCCATGG 60 NA Rattus norvegicus 81 Zfpl1 ENSRNOG00000050180 ENSRNOT00000075165 3 1 1 82 1 221446119 221446248 CCTCCCTCTGATCGATGAG 59 221446055 221446075 CATTAAAGCTGGACCAGTCAG 59 NA Rattus norvegicus 81 Gpr87 ENSRNOG00000013894 ENSRNOT00000018573 3 1 1 89 2 149404556 149404578 GTACATCACAACTAGAGAATGGG 59 149400036 149400054 GTTTGCAGTGTGACTTGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc25a1 ENSRNOG00000038001 ENSRNOT00000000306 2 1 1 83 11 87205947 87205965 TACTGTACTGAAGCAGGGC 59 87206012 87206190 GGGTTGTCTCCTTGGTACC 60 NA Rattus norvegicus 81 Cdh12 ENSRNOG00000026392 ENSRNOT00000034044 2 1 1 80 2 72533385 72533406 TTCTACCTGTAGGACTTAGCAC 59 72533444 72535535 ACAGCACAACAATAGCTAAGAG 59 NA Rattus norvegicus 81 Dnajb14 ENSRNOG00000060107 ENSRNOT00000081989,ENSRNOT00000080941 1 2 2 81 2 243147602 243148260 AGAAGAAAGAGGAGATGGAGG 59 243148303 243148321 GCTTAACAGGGACACAAGG 59 NA Rattus norvegicus 81 Cactin ENSRNOG00000039852 ENSRNOT00000027926 3 1 1 80 7 11263591 11263736 ACATCCAGGTGTACATGGA 58 11263529 11263547 TCTCATCCTCTGTGATGGT 57 NA Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000091212 3 1 2 90 3 173956689 173956707 AACCCGAAGATGATGAGCA 59 173956760 173959477 CCAGCATTTATACTGCTGCT 59 NA InUTR Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 1 2 2 80 10 110161505 110162246 GCTATCCTTCTGAATTTGCCA 59 110161445 110161464 TCAGGTAGGAGTAGTCAGGT 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000082962 2 1 4 88 2 149530409 149532045 GCTTTCTAGTAATCAGCCACAG 59 149532093 149532112 CACAACCTTCGTGTCTTCTC 59 NA Rattus norvegicus 81 Gpatch1 ENSRNOG00000011584 ENSRNOT00000015791 3 1 1 80 1 91567530 91567551 GTGTCTTCAAGACAGAACAGAG 59 91566575 91567495 GAATTCACTAAGATCCTCTTCATCC 59 NA Rattus norvegicus 81 AABR07017763.1 ENSRNOG00000046089 ENSRNOT00000071830 1 1 1 60 15 30751525 30751604 AAAGAAGGAGCAATGGAGAC 58 30751627 30751645 CCCTCTGTGACAAGAACCA 59 NA DesignNoJunction Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 2 2 2 101 7 142779167 142779392 AACATCCTAGGCTTCATCG 57 142779457 142779475 AAAGTCATAGAGGGAGCCA 58 NA Rattus norvegicus 81 Pga5 ENSRNOG00000047279 ENSRNOT00000072343 1 1 1 80 1 226723866 226725774 TTAGCTGTGGACAGCATCTC 60 226723805 226723825 GGTCCCTGTATCCATGATACC 60 NA Rattus norvegicus 81 Gzmbl1 ENSRNOG00000050198 ENSRNOT00000071692 3 1 1 83 X 123016501 123016649 CTATTAAAGCTGAAGAGTAAGGCC 59 123016441 123016460 TGGCTTCACTTTGAAGTTGC 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 3 2 2 85 3 5118963 5118983 GAAGACCGAAATGCTACTCAC 59 5119030 5119672 GCTCAGGAATCCATAGCCA 59 NA Rattus norvegicus 81 Dlg2 ENSRNOG00000022635 ENSRNOT00000055401 2 1 1 80 1 156810866 156849265 ATGACTACACAAGGCCTCC 59 156849309 156849327 AATAGTGCCTGGGAGAAGC 60 NA Rattus norvegicus 81 Alpk2 ENSRNOG00000017421 ENSRNOT00000042352 3 1 1 80 18 60972852 60972870 CCTCTATTACTGCTGCGTC 58 60972695 60972808 AGCTGTTTGAGAACTTCGG 58 NA Rattus norvegicus 81 Exoc3l2 ENSRNOG00000017448 ENSRNOT00000023451 2 1 1 97 1 80396652 80396670 TAGCAGTTCGGAAGCTCTG 60 80396731 80397151 CCACCAGAACCTGGTATGG 60 NA Rattus norvegicus 81 Olr657 ENSRNOG00000045624 ENSRNOT00000043928 2 1 1 60 3 77389292 77389313 GTTTCTCAACAACTGTAGCTCC 60 77389253 77389272 ATAGAAGCCTCCTTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf1d ENSRNOG00000010921 ENSRNOT00000078161,ENSRNOT00000014605 1 2 2 80 8 13865015 13865033 CTTTGACAGCCGTAGACAC 59 13865076 13865406 GCTTCATCTTCAGTTGACGG 59 NA Rattus norvegicus 81 Vps37c ENSRNOG00000046439 ENSRNOT00000074079 3 1 2 130 1 226742519 226760234 CTCCGGTAGGAGAAGATGG 59 226763723 226763741 CGTTCTAACTGCAGGTCCT 59 NA InUTR Rattus norvegicus 81 Mesdc2 ENSRNOG00000012366 ENSRNOT00000055583 3 1 1 80 1 146041058 146041782 TGTTCAGAGGTTCATCGTG 58 146041826 146041844 AAGTCCTTGATCTCCCAGG 58 NA Rattus norvegicus 81 Rn60_4_1361.1 ENSRNOG00000059669 ENSRNOT00000082539 1 1 1 80 4 71243078 71243886 GTTCAGATATCAAATGGCTGG 57 71243018 71243038 CAAACTGACTAGTTCTTGCAC 58 NA Rattus norvegicus 81 Mapkapk2 ENSRNOG00000004726 ENSRNOT00000061070 3 1 1 80 13 47789893 47790100 CTGATTGTCATGGAGTGTCTC 59 47789833 47789851 TCTTTCTGTGAATGCCTGG 58 NA Rattus norvegicus 81 Tnfrsf13c ENSRNOG00000007664 ENSRNOT00000056037 1 1 1 84 7 123455139 123455627 AAGGAGTCCAGCAAGAGTC 59 123455073 123455091 AATGGAGGCCAGTTAGGAG 59 NA Rattus norvegicus 81 Foxk2 ENSRNOG00000036663 ENSRNOT00000054919 2 1 1 82 10 110497392 110497413 TGACCTCAATTTAATGGCTGAC 59 110497456 110499960 TTGAGTCATCCTTTGGGCT 59 NA Rattus norvegicus 81 Olr664 ENSRNOG00000047937 ENSRNOT00000046926 2 1 1 60 3 77585523 77585544 TGACTTGTTTCCATTACTGGAG 58 77585559 77585583 CACTAAGAGGCCATAAACATAAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000001319 3 1 2 81 12 11288333 11288354 CACATCTACAAGAAGAATGGGA 58 11284637 11288293 AGTCAATACCTGTGATGTGTC 58 NA Rattus norvegicus 81 Arpc1a ENSRNOG00000000996 ENSRNOT00000076021 2 1 2 122 12 11272960 11272978 AGGGTCTCCGGATAATGTG 59 11272856 11272874 GTGTGACAGTGTTTCCTGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Gpr17 ENSRNOG00000025745 ENSRNOT00000036537 2 1 1 60 18 24734651 24734670 AGCACCTCAAGAATAAAGCC 58 24734610 24734629 CAAATCAGGAAGATGGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrna1 ENSRNOG00000018286 ENSRNOT00000024706 2 1 1 80 3 60446197 60446818 GGAGTCTAACAATGCGTCTG 59 60446136 60446154 ACCAGCATAAAGACTCCGA 58 NA Rattus norvegicus 81 Chrna1 ENSRNOG00000018286 ENSRNOT00000024706 3 1 1 80 3 60446195 60446817 GAGTCTAACAATGCGTCTGAG 59 60446135 60446153 CACCAGCATAAAGACTCCG 58 NA Rattus norvegicus 81 AC097912.1 ENSRNOG00000053213 ENSRNOT00000085902 1 1 1 60 4 71791254 71791273 GGTTCACTCCTTTCTTCCTG 58 71791295 71791314 CGGTACAGTGAGAACATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eml5 ENSRNOG00000004207 ENSRNOT00000057601 1 1 1 80 6 122838867 122838886 GAATAGATGACAGCCACACC 59 122837768 122838826 TATCTTTACTGCCTCTTGCCA 59 NA Rattus norvegicus 81 AABR07017831.1 ENSRNOG00000046976 ENSRNOT00000072332 1 1 1 62 15 31618325 31618343 CTTTCAGCTCCATTTGCCT 58 31618552 31618570 TTGAAGCCTGAGTTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017831.1 ENSRNOG00000046976 ENSRNOT00000072332 2 1 1 63 15 31618325 31618343 CTTTCAGCTCCATTTGCCT 58 31618552 31618571 ATTGAAGCCTGAGTTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_18_0774.2 ENSRNOG00000053391 ENSRNOT00000091156 2 1 1 60 18 78283065 78283087 CGATACTGCTCTGTATTCTTCTC 59 78283107 78283125 GGAGACTTACTCAAGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362350 ENSRNOG00000007758 ENSRNOT00000029039 2 1 1 80 13 110640451 110640470 GAGTTGCATTGTTTGGAGGA 59 110637165 110640409 GAATCTCACGTCTTAGCACG 59 NA Rattus norvegicus 81 Fam96b ENSRNOG00000011865 ENSRNOT00000015811 3 1 1 81 19 551886 552064 GATCTTCGATCTTATTCGCTCC 59 552106 552124 TCGAACCTGCTCTACTACG 59 NA Rattus norvegicus 81 Fscn2 ENSRNOG00000036700 ENSRNOT00000054975 1 1 1 86 10 109534473 109538570 GAGGCAAGGAATCAATGTCTC 59 109538618 109538636 TTCTTTGTCTCCTGGTCGA 58 NA Rattus norvegicus 81 Engase ENSRNOG00000027498 ENSRNOT00000038088 3 1 1 80 10 107508479 107510568 TACTGACAAGTCACTGGAGC 60 107510611 107510629 AGACACTCATACACCCACC 59 NA Rattus norvegicus 81 LOC680058 ENSRNOG00000026891 ENSRNOT00000034790 1 1 1 60 1 79727688 79727706 AAAGAAAGAAGGCTGTCGT 57 79727746 79727767 TCTTCAATGACTATGCACTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Fa2h ENSRNOG00000018950 ENSRNOT00000025625 2 1 1 80 19 43555680 43555698 CTGGTCCTACTACCGAACC 59 43549405 43555639 GGCACCACAAGTGAATAATCTC 60 NA Rattus norvegicus 81 Chrm5 ENSRNOG00000006397 ENSRNOT00000008387 1 1 1 121 3 103968285 104018317 ACTCCTGCCAGATATTGGC 60 103968182 103968203 GTGCTTTCATTGTAAGACTCCC 60 NA InUTR Rattus norvegicus 81 Uevld ENSRNOG00000013624 ENSRNOT00000045719 3 1 1 80 1 103010140 103010161 CAAAGACACTTCCCAGAAAGAC 60 103005819 103010102 GGTATGTTGTACGTCTTACCCT 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 2 3 5 80 18 79424926 79426825 CTTCAAGAACATTGTGACACC 58 79427269 79427287 CAGCTAAATCTGCTGAGGG 58 NA Rattus norvegicus 81 AABR07017635.1 ENSRNOG00000046292 ENSRNOT00000075046 2 1 1 63 15 29465761 29465779 CTTTCAGCTCCATTTGCCT 58 29465533 29465552 ATTGAAGCCTGAGTTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793 1 7 8 80 6 64825754 64825870 GGAAATCAAAGATCCAACCAG 57 64825910 64825930 CATTCAAAGGAAACCTTGCTC 58 NA Rattus norvegicus 81 Car5a ENSRNOG00000019098 ENSRNOT00000025848 2 1 1 81 19 54755046 54755064 TCCTGCAGATACCTCTGGA 59 54742584 54755001 CACCACTGATCCCTGACTC 60 NA Rattus norvegicus 81 Tas2r107 ENSRNOG00000005646 ENSRNOT00000007453 1 1 1 60 4 165773544 165773565 ATTGTATCCCTGATTACCTGCT 59 165773505 165773523 TTTGCCTGATGTGTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560559 ENSRNOG00000025031 ENSRNOT00000031780 3 1 1 60 11 83676682 83676702 TGATAGACTGGAAGGATCCTC 58 83676642 83676661 GTTACATGCTGCCAGTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681182 ENSRNOG00000047077 ENSRNOT00000068118 1 1 1 80 12 20883364 20885754 TACACATGATCTCAGTACGAC 57 20885796 20885814 CTTATGTTCTCCAGGCCAG 58 NA Rattus norvegicus 81 Timm13 ENSRNOG00000019682 ENSRNOT00000026648 3 1 1 129 7 11677443 11677461 GGAACAGGTGAAAGTGCAG 59 11677627 11677870 GATGCATTTCTGCTCCGAG 59 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000072184 3 1 4 61 8 53871785 53871803 CTTGTTCCGTTGTCTCCTC 58 53870131 53870150 AGTTCTGTGGTTGAAAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Fam208b ENSRNOG00000018011 ENSRNOT00000048933 2 1 1 80 17 70267815 70267839 CTCATCAAATGCTTAGAAGATAGGG 60 70267875 70267995 ATCTCCAAAGTCTGGTTCTGG 60 NA Rattus norvegicus 81 Nceh1 ENSRNOG00000013313 ENSRNOT00000017805 1 1 1 89 2 112929546 112931210 GGACAGCAGTTTACCTACGT 60 112931262 112931280 GTTGAAGTCCAAAGCCTGC 60 NA Rattus norvegicus 81 Gpr158 ENSRNOG00000024832 ENSRNOT00000034098 3 1 1 80 17 88250582 88451155 CAACTCAGAGTGTATGCCA 57 88451198 88451217 TGATAGAATCCTGCTTTGCA 57 NA Rattus norvegicus 81 Antxr1 ENSRNOG00000008678 ENSRNOT00000011675 2 1 1 80 4 119081543 119081562 GTGTCATCATTGCTCTGACG 59 119078904 119081500 CTCGGGATCTGTTAGCCTC 59 NA Rattus norvegicus 81 Ston2 ENSRNOG00000004458 ENSRNOT00000005881 1 1 1 80 6 115401432 115401451 GATCCATCTCTGTGGAAGAC 58 115399774 115401390 CAATTTCCACCTTGTAGCTG 57 NA Rattus norvegicus 81 Slc36a4 ENSRNOG00000011455 ENSRNOT00000015383 1 1 1 80 8 14253856 14253877 TAGGAATTATTTCCGTCCACTG 58 14253915 14255431 ACGTTGACTTCTTAAACCTCTG 59 NA Rattus norvegicus 81 Kcnk10 ENSRNOG00000003813 ENSRNOT00000005175 1 1 1 85 6 122423229 122423247 CTACTTTGCAGCTGTCCTC 58 122420726 122423180 CTTTGATCTCACCCACCTC 58 NA Rattus norvegicus 81 Rpa3 ENSRNOG00000008309 ENSRNOT00000011123 3 1 1 81 4 34280185 34281087 GAATTGATGGAGCCACTGG 59 34280122 34280141 ATAGTATGGTTGCCTTGGCT 59 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692,ENSRNOT00000082967 3 2 2 80 X 71565770 71568029 GAAGCCATAAGAATCAGTCCT 58 71568071 71568089 CTGAACATCCTGCATCTCC 58 NA Rattus norvegicus 81 Gpc4 ENSRNOG00000002413 ENSRNOT00000003282 2 1 1 80 X 139360102 139366006 CAATTTCATAGATGCCATGCTG 59 139360043 139360061 TCGATGGGATCCATAACGG 59 NA Rattus norvegicus 81 Tk2 ENSRNOG00000012853 ENSRNOT00000017269 1 1 1 80 19 935089 935108 CCTGAAATCTGCTACCAGAG 58 935149 936603 AATAGCACTGAGGTATTCCAC 58 NA Rattus norvegicus 81 Fat3 ENSRNOG00000011585 ENSRNOT00000015977 3 1 1 80 8 14519572 14519594 CAAAGGTCAGTCTACAACATGAG 60 14506505 14519536 CAGCACCGTAATAAATACCTGAG 59 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291,ENSRNOT00000043199 3 2 2 80 4 99787594 99787615 AATGGACAACTTTACTCTGGAC 58 99787656 99788981 ACTGCATGACTCTGAACAG 58 NA Rattus norvegicus 81 Zfpm1 ENSRNOG00000043077 ENSRNOT00000068452 1 1 1 80 19 55118792 55121068 CCCAGAGAAGATGTGAGCC 60 55121112 55121130 CTCTTGTCCCTCCACATCC 60 NA Rattus norvegicus 81 Asb15 ENSRNOG00000006365 ENSRNOT00000060494 1 1 1 80 4 51637744 51637763 GTGGTCAGAGATAGAGGAGG 58 51637804 51638575 GTAATGAACTCACAGAACGGA 58 NA Rattus norvegicus 81 Rnf148 ENSRNOG00000042462 ENSRNOT00000064228 1 1 1 62 4 50688225 50693854 TCAGATGTCACAGTTAATGGAG 58 50688184 50688202 AGACCTATGAGCTGAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 2 1 2 61 8 11997801 12160125 ATAGTTAACCTTGGTCCCGC 60 12160149 12160167 AGAAATGAGCTGTCAGGGA 58 NA DesignNoJunction Rattus norvegicus 81 Rora ENSRNOG00000027145 ENSRNOT00000013142 3 1 1 80 8 75602045 75602063 GACTCTCAGAACAACACCG 58 75602105 75603492 GAAGTCTTCACAACCTAAGGA 57 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121,ENSRNOT00000018153 1 2 2 80 1 92108940 92110508 GAATCTTTCCATTACAAGAGCC 58 92108881 92108899 CGAAGCTACTGACAAGGTG 58 NA Rattus norvegicus 81 Shc4 ENSRNOG00000037134 ENSRNOT00000011084 2 1 1 84 3 117897889 117904511 ATCCTGAAGGCAAGGTGAG 59 117897823 117897844 GGCAAACTATTATCCATGTGGT 59 NA Rattus norvegicus 81 Arhgap10 ENSRNOG00000013152 ENSRNOT00000017867 3 1 1 80 19 34272080 34272100 GTGCACAGTTGGATAAGATGG 59 34272138 34292223 CTTGGTCATTTATACCTCGTGTC 59 NA Rattus norvegicus 81 Csn2 ENSRNOG00000039326 ENSRNOT00000060265 2 1 1 83 14 21974770 21974789 CATTCACTGTGTCCTCTGAG 58 21975921 21976031 GTTTCACCTTCTGAAGTTTCTC 58 NA Rattus norvegicus 81 Teddm1 ENSRNOG00000048614 ENSRNOT00000071815 1 1 1 60 13 71323364 71323383 AGCCTTCATCCTGTTTAGAC 57 71323404 71323424 GTCACTGATGTCATCATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab6 ENSRNOG00000011094 ENSRNOT00000015447 1 1 1 80 7 124763971 124772666 GACAGACGAGCAGTTTGAC 59 124763909 124763931 CTGAGGAAATCTTGGTACTTGAG 59 NA Rattus norvegicus 81 Olr1595 ENSRNOG00000022329 ENSRNOT00000004677 3 1 1 60 13 92241851 92241869 GCCTTTGTTGAAGTTAGCC 57 92241892 92241911 ATGTATCACGTCTTGAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612,ENSRNOT00000089073 2 2 2 80 1 248298706 248298725 CTTGACCTGTGTCACATCCT 60 248297985 248298663 GGTTTCACAAAGGGCAGAG 59 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612,ENSRNOT00000089073 3 2 2 80 1 248298705 248298723 TGACCTGTGTCACATCCTC 59 248297983 248298661 CTGGTTTCACAAAGGGCAG 59 NA Rattus norvegicus 81 Aqp8 ENSRNOG00000014652 ENSRNOT00000019939 1 1 1 80 1 193429309 193429327 CTACTGGGACTTCCATTGG 57 193429370 193430076 ATGAAGAGCCTAATGAGCAG 58 NA Rattus norvegicus 81 Aqp8 ENSRNOG00000014652 ENSRNOT00000019939 2 1 1 80 1 193429310 193429328 TACTGGGACTTCCATTGGA 58 193429371 193430077 AATGAAGAGCCTAATGAGCA 57 NA Rattus norvegicus 81 C1qtnf1 ENSRNOG00000003259 ENSRNOT00000004373,ENSRNOT00000087404 1 2 2 80 10 107471164 107471183 GAGTTCAGGAGGAACAACAG 58 107471226 107473869 TTTCTTCAGGCCTTGTCAC 58 NA Rattus norvegicus 81 Prmt8 ENSRNOG00000053804 ENSRNOT00000086772 3 1 1 80 4 160275643 160276212 ACAAGTGGTTGAAACCTGGA 60 160275582 160275603 TGTACTGTCTGTCTTCAATTGC 59 NA Rattus norvegicus 81 Akap7 ENSRNOG00000013202 ENSRNOT00000017617 1 1 1 80 1 21164359 21164377 CTTTCCAAGGTCAGGTTGG 58 21164420 21189983 TTGCAGTCTCTGCTATCTCC 59 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109,ENSRNOT00000077461 3 2 2 81 10 47531417 47532672 ACAATAAGCTCATCAAACGGG 59 47531356 47531375 ACAGTGAAGTGCATGATGAC 59 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000046006 ENSRNOT00000059593 3 1 1 82 12 22005807 22005828 CGTAGTCAATTCAGTTTCTACG 57 22001035 22005767 TACTCATAGAAGACTTCCACCT 58 NA Rattus norvegicus 81 Ush2a ENSRNOG00000003738 ENSRNOT00000004992 3 1 1 80 13 107252193 107254410 AGGAACTAAGGTATGTTGTGAC 58 107254450 107254469 AGTGCGATGTATTTCTCCTC 58 NA Rattus norvegicus 81 Dapk3 ENSRNOG00000020383 ENSRNOT00000027634 1 1 1 80 7 11393753 11394387 TCATCACCTACATCCTCCTG 58 11393692 11393710 CAGCCGAGATGTTTGTCAG 59 NA Rattus norvegicus 81 Tm9sf2 ENSRNOG00000012751 ENSRNOT00000017211 2 1 1 80 15 108571651 108574641 ATCTATGTGCAGAGGATTACCA 59 108574679 108574700 CGTATACGAGGAAATACACTGC 59 NA Rattus norvegicus 81 Tm9sf2 ENSRNOG00000012751 ENSRNOT00000017211 3 1 1 80 15 108571650 108574640 CATCTATGTGCAGAGGATTACC 59 108574678 108574699 GTATACGAGGAAATACACTGCC 59 NA Rattus norvegicus 81 Tfeb ENSRNOG00000014666 ENSRNOT00000039102 3 1 1 89 9 15212070 15212185 GAGCTAACAGATGCTGAGAG 58 15211415 15211433 GTTGAACCTGCGTCTTCTC 59 NA Rattus norvegicus 81 Ddx23 ENSRNOG00000060154 ENSRNOT00000089612 1 1 1 80 7 140331588 140331705 GCTATTAAGGAGCGTTACCTG 59 140331528 140331546 CTCAAACACAAACTTGCGG 58 NA Rattus norvegicus 81 Foxs1 ENSRNOG00000008529 ENSRNOT00000011262 1 1 1 60 3 148406810 148406828 AGGTTCTGGCTATCCACTG 59 148406768 148406786 GAAGAACATTCCCGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxs1 ENSRNOG00000008529 ENSRNOT00000011262 3 1 1 60 3 148406973 148406993 GACGCTGAATTTCTGTATGGG 60 148406933 148406951 GACTGCAGAGGTCAAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359,ENSRNOT00000008504 1 2 2 118 6 99433618 99433636 ATATCTGTTGGACCACCGG 59 99433959 99433977 CTTGCCATGTTGGAAGACC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hoxa9 ENSRNOG00000048146 ENSRNOT00000071668 1 1 1 100 4 82278988 82280155 ATCGATCCCAATAACCCGG 59 82278906 82278924 TCTTTCTCCAGTTCCAGCG 60 NA Rattus norvegicus 81 Olr665 ENSRNOG00000051939 ENSRNOT00000090062 1 1 1 60 3 77605314 77605333 TTCCTTGTTGCTTGTTTCCT 58 77605273 77605291 TTCAGAACTGTGGGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc94 ENSRNOG00000047456 ENSRNOT00000072357 2 1 1 80 9 11107216 11107237 GAAACTCAAGTTACCCAAGGAC 59 11105841 11107177 TCTCCACATGTCTTACACCTC 59 NA Rattus norvegicus 81 Prmt7 ENSRNOG00000000258 ENSRNOT00000000275,ENSRNOT00000081312 2 2 2 80 19 38229222 38231895 GTAAGAAGGTCTCCCTCCTC 59 38231935 38231956 CATACCAGAAGTACAGGTTGTG 59 NA Rattus norvegicus 81 Prrg4 ENSRNOG00000022710 ENSRNOT00000038464 3 1 1 85 3 94785102 94794918 TATCCGAGTTCTTCAGCCA 58 94785035 94785054 GACAAGACAGTTTCCTCAGG 58 NA Rattus norvegicus 81 Psap ENSRNOG00000000571 ENSRNOT00000000696 1 1 1 80 20 29854623 29854641 CACCAAGGAGGAGATCCTG 59 29854683 29854923 AATTCATCACACTGCTTCTGG 59 NA Rattus norvegicus 81 Arg2 ENSRNOG00000053811 ENSRNOT00000083433 2 1 1 82 6 102332413 102332431 CCTCACCACTGTATCTGGA 58 102332477 102333219 GCAGTTGTGGTACCTTGTC 59 NA Rattus norvegicus 81 Atxn3 ENSRNOG00000005470 ENSRNOT00000007505 2 1 1 81 6 125824587 125824607 ACCTGGATACCTTTCATACCC 59 125821617 125824544 CATAGCATTGCCTGCTTGG 60 NA Rattus norvegicus 81 Snca ENSRNOG00000008656 ENSRNOT00000039247 1 1 1 80 4 90870287 90880870 CGTCCTCTATGTAGGTTCCA 58 90864820 90864841 ACTTGTTCTTTGGTCTTCTCAG 59 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934 1 1 2 82 18 55897696 55916080 GAGTCCAGCTCCAGATAGC 59 55897632 55897650 CTGAGCTGGGTAATGACGT 60 NA InUTR Rattus norvegicus 81 Rbmxl2 ENSRNOG00000021946 ENSRNOT00000044538 2 1 1 81 1 171420635 171420654 TTCGTCACCTTCGAGAACC 60 171420698 171420717 TTGATGGCTTACCATCCAGG 60 NA Rattus norvegicus 81 Zfp74 ENSRNOG00000046937 ENSRNOT00000072689 3 1 1 80 1 87821042 87825327 GAGTCTGAGGGACTAGTGAC 59 87820981 87820999 CTGAGTAGGATCCAGCTGC 60 NA Rattus norvegicus 81 Olr427 ENSRNOG00000031763 ENSRNOT00000047764 3 1 1 60 3 21208832 21208850 TGCTAGTGAATGTGCTCTC 57 21208874 21208892 ATCTGTACTAGGCATCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sufu ENSRNOG00000019807 ENSRNOT00000026987 2 1 1 80 1 266175893 266201086 ATATGTCTTCCAGTCAGAGAATACC 60 266201120 266201142 CTTGACTCACTGTTATCCAAAGG 60 NA Rattus norvegicus 81 Cby1 ENSRNOG00000013892 ENSRNOT00000018787 2 1 1 80 7 120896381 120896402 TATGGAACTCCTACCATGAACC 59 120896442 120896539 ACTAATCACTGAGTCTGCCA 59 NA Rattus norvegicus 81 Arfgef3 ENSRNOG00000011460 ENSRNOT00000015927 1 1 1 80 1 13895825 13895844 TACTGCTCAACCTGAAACTG 58 13895015 13895783 TGAACTCTTTCATCATGCCT 57 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000083061,ENSRNOT00000036273 2 2 2 80 3 136889582 136892819 CCGTATGTTGAGGATTTATCCA 58 136889523 136889542 ATTGATATTTCCTGCGTCCA 57 NA Rattus norvegicus 81 Tas2r118 ENSRNOG00000021799 ENSRNOT00000034936 3 1 1 60 4 51002402 51002423 CCACCTTCTTCATCTTCTTCAC 59 51002363 51002382 GTGCCAATAAAGGAGACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam58b ENSRNOG00000022582 ENSRNOT00000011019 3 1 1 60 10 66020247 66020266 TTCCAAGTCTCTTTCCAGCA 59 66020206 66020227 TCTTGAGGGAAATCAAGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb1 ENSRNOG00000030904 ENSRNOT00000043381 1 1 1 80 2 105061801 105069992 ACTATGAGGAATTGAATGCCC 58 105061741 105061760 GGCCATATGTGTACTTGGTG 59 NA Rattus norvegicus 81 Ndufa9 ENSRNOG00000061684 ENSRNOT00000089193 2 1 1 80 4 159393342 159395475 GCTTATCTTTCTGGAGTGGG 58 159393281 159393301 AGATTGATGACCACATTGCTG 59 NA Rattus norvegicus 81 Polr2b ENSRNOG00000024779 ENSRNOT00000039252 3 1 1 80 14 33071046 33071067 TAATGGCAATTGCTAACACCAG 60 33070351 33071005 TTCGCACCAAGGAGATCTG 60 NA Rattus norvegicus 81 AABR07017595.1 ENSRNOG00000049577 ENSRNOT00000075409 3 1 1 102 15 29073795 29074001 AGCTCAATGGGATGAGCAG 60 29074063 29074085 CTAGTACTGAAAGTGCAGTTGAG 59 NA Rattus norvegicus 81 LOC102555377 ENSRNOG00000026569 ENSRNOT00000034746 1 1 1 89 1 62171413 62171431 ACCTTGACTGTGCTCAGAG 59 62171481 62172733 GACATAAGTGATGACTCTCCAC 58 NA Rattus norvegicus 81 Pnp ENSRNOG00000009982 ENSRNOT00000013582 2 1 1 80 15 27882241 27882369 CCAACGATGAAAGGTTTGGA 59 27882411 27882430 CATTGAAAGCCTTCTGCCTC 60 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253,ENSRNOT00000065448,ENSRNOT00000022331 2 4 4 80 1 200648282 200657930 CGGAGGCTATAAGGTACGA 58 200648220 200648239 CAGGTGTAATTGCCTTTGTC 57 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000077703 2 1 8 102 3 100770330 100815570 CAAAGAAGTTCCACCAGGTG 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 AABR07017783.2 ENSRNOG00000047797 ENSRNOT00000073618 2 1 1 61 15 31057682 31057798 GGGATAAACTTTCTCCTGAGAG 58 31057818 31057838 ACATGAACATCAGGTTGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Hacd4 ENSRNOG00000005772 ENSRNOT00000033651 3 1 1 80 5 106742062 106746203 ATGGTAAGGTACACTTACAGCA 59 106742003 106742022 CCATAGTGTTTGACTGAGCC 59 NA Rattus norvegicus 81 Cyp2d2 ENSRNOG00000008988 ENSRNOT00000012413 1 1 1 80 7 123654984 123655626 GCCATATAGCTTATACAAGCTTCG 60 123654927 123654946 ATCACAACTACAGGCTTCCA 59 NA Rattus norvegicus 81 Cyp2d2 ENSRNOG00000008988 ENSRNOT00000012413 2 1 1 80 7 123654980 123655620 TAGCTTATACAAGCTTCGAAGC 59 123654921 123654940 CCGTTGATCACAACTACAGG 59 NA Rattus norvegicus 81 Slc15a3 ENSRNOG00000021644 ENSRNOT00000029443 3 1 1 80 1 226909107 226909566 ACTACAGGATCCCAGAAGC 59 226909610 226909628 TCAAGTGGTCCTTGACAGG 59 NA Rattus norvegicus 81 Vwf ENSRNOG00000019689 ENSRNOT00000026643 1 1 1 80 4 158164455 158164473 GTGAAATGCAAGAAACGGG 58 158164514 158165913 TCTCTTAACATTCACCTCTCCA 59 NA Rattus norvegicus 81 LOC684828 ENSRNOG00000048264 ENSRNOT00000075069 3 1 1 60 17 43798049 43798069 CTTCAAACTCAACAAGAAGGC 58 43798009 43798028 CCCTACTTTCTTTGCTTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbx4 ENSRNOG00000046207 ENSRNOT00000075440 2 1 1 84 10 108196154 108196172 ATCGAGAAGAAGCGGATCC 59 108194632 108195962 GTTCCCACGTGTTATATTTGGG 60 NA Rattus norvegicus 81 Fam110c ENSRNOG00000005660 ENSRNOT00000007466 2 1 1 84 6 49969426 49969444 TTTACCTGCAAGAAGGCCA 60 49969490 49972655 GAAGTTTGCTTCCTGGATCAG 59 NA InUTR Rattus norvegicus 81 AABR07072054.1 ENSRNOG00000046546 ENSRNOT00000019751 1 1 1 80 1 259972122 259973132 GACATTCAGGTTTCAAGTGG 57 259973174 259973193 TTCGCTTACATTCACAACCT 58 NA Rattus norvegicus 81 Mir107 ENSRNOG00000035639 ENSRNOT00000053762 2 1 1 60 1 253128297 253128315 TTACAGTGTTGCCTTGTGG 58 253128255 253128273 CTGTGCTTTGATAGCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049405.1 ENSRNOG00000037974 ENSRNOT00000057772 3 1 1 81 5 120869828 120869847 ATATCTCATCGGCACACTCC 60 120869888 120869910 GGTTTGGAATGCCAGATATCAC 60 NA Rattus norvegicus 81 AC095959.2 ENSRNOG00000061898 ENSRNOT00000087272 1 1 1 60 3 78154501 78154522 CCTGGCTTTCTTGTCTTTACTG 60 78154462 78154481 AATCATCTTGGGTGTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734,ENSRNOT00000073268 1 2 2 80 4 123471678 123472923 CAGTTATATGTGGTGTCGGTG 59 123471618 123471636 GTGTGCTCCACATATGCAG 59 NA Rattus norvegicus 81 AABR07048064.1 ENSRNOG00000013579 ENSRNOT00000018164 1 1 1 60 5 59911932 59911950 GACCAGATACAGAACGCAC 58 59911890 59911911 ACTTTCCAGAATACTGCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000075982 1 2 4 90 2 208571851 208573665 TGTAACAGGACCCTACGTG 59 208571779 208571797 GGTAGAGAAGGTCTCTGGG 58 NA Rattus norvegicus 81 Katnal2 ENSRNOG00000017788 ENSRNOT00000048702 1 1 1 80 18 73310325 73310343 TACCCGCAGCTATTCACAG 60 73310102 73310282 TAAAGTCTTCCCTGTGCCTG 60 NA Rattus norvegicus 81 Plxdc2 ENSRNOG00000000142 ENSRNOT00000000155 2 1 1 80 17 83511452 83525690 CGGATACAAAGAAATTCCGGTC 60 83525731 83525749 AATGCATCAGACAACCCGA 60 NA Rattus norvegicus 81 AABR07051426.1 ENSRNOG00000047642 ENSRNOT00000073625 2 1 1 80 3 10900659 10900678 CAGCAGCTATGGATACAGGA 59 10894099 10900618 CTTTCCCAGGATTACCTTCTG 58 NA Rattus norvegicus 81 AABR07067896.1 ENSRNOG00000046343 ENSRNOT00000072983 3 1 1 80 9 71845936 71848851 GAGAAAGTGAGAGCTCCAC 58 71845874 71845894 GTAGGAGGATAAGATCAGTGC 58 NA Rattus norvegicus 81 Olr546 ENSRNOG00000047728 ENSRNOT00000046809 1 1 1 60 3 75184143 75184163 GAACCCTCTAATTTACAGCCT 58 75184103 75184121 AACTGACCTCTTGACTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gjb5 ENSRNOG00000059897 ENSRNOT00000081919 2 1 1 60 5 145423118 145423137 GGTCAACAAGTACTCCACAG 58 145423077 145423096 ACGGAAGACAAAGACCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcamr ENSRNOG00000004393 ENSRNOT00000029694 1 1 1 80 13 47542000 47543246 CTGCTCCATGGTTCATCCA 60 47543290 47543308 CCTGAACTGTTGAGAGCCA 60 NA Rattus norvegicus 81 Olr561 ENSRNOG00000033422 ENSRNOT00000042246 3 1 1 60 3 75438416 75438435 CACCTGTACTCAAACTTGCT 58 75438455 75438476 ACTATGTAGACTGCTATCTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp868 ENSRNOG00000028919 ENSRNOT00000015635 3 1 1 80 16 21521738 21521760 CTTCTCAGAAGAGTCTCTATGGA 59 21521798 21522082 GGTCTTCCCATTCATATCCTG 58 NA Rattus norvegicus 81 Plrg1 ENSRNOG00000006655 ENSRNOT00000009113 2 1 1 80 2 182055630 182055652 GTCAGAAAGTCGGTTACTAACAG 59 182055691 182056500 GTTTCTTCTGTCGCAGTCTC 59 NA Rattus norvegicus 81 Slc29a2 ENSRNOG00000020025 ENSRNOT00000027178 1 1 1 80 1 220404063 220404082 TACTACCTGACCAAGAAGCC 59 220404124 220404944 ATTCTTCTCATCAGCTCCGA 59 NA Rattus norvegicus 81 Eif5a2 ENSRNOG00000011859 ENSRNOT00000015779 2 1 1 87 2 115338310 115338832 GTCATGCCAAGGTACACCT 60 115338882 115338901 ACATCCATGTTGTGAGTGGA 59 NA Rattus norvegicus 81 Smr3a ENSRNOG00000001949 ENSRNOT00000002669 2 1 1 105 14 21703819 21707236 ATGCTTCCTGTCTGGTGAG 59 21703732 21703751 AATTCCTGGACCAAAGGGAG 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000044591,ENSRNOT00000002496 1 3 3 80 11 80933915 80933934 AAGGACAGTTTGTACACCGA 59 80932611 80933876 CTGATACCACTTTGGGATATCTG 59 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950,ENSRNOT00000066336 3 2 2 80 18 71104408 71136041 TCAGGAGTAGCAACTGGTC 59 71136084 71136103 GGAAGTAAGTTCGGGAGAGG 60 NA Rattus norvegicus 81 Mettl20 ENSRNOG00000036918 ENSRNOT00000055442 1 1 1 81 4 183657274 183657295 GCTTTCTAACTCTTTAACTGGC 58 183657334 183658540 GACACTGGAATTTCTGAATCTG 58 NA InUTR Rattus norvegicus 81 Olr1297 ENSRNOG00000046553 ENSRNOT00000075687 3 1 1 60 15 35505244 35505266 GTATCCATGTCCTTTCAAGTCTG 59 35505285 35505304 GTAAGCCAACACCATACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl34-ps1 ENSRNOG00000038045 ENSRNOT00000057895 2 1 1 60 17 78876220 78876238 GGCAACAGGATCGTTTACC 59 78876262 78876280 CACATGCGGATTTAGGTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Retsat ENSRNOG00000014090 ENSRNOT00000019571 1 1 1 81 4 100472814 100473105 CATGGACAAAGCGATGGAG 59 100473149 100473168 GAAGGCAATGAAGAGAAGGG 59 NA Rattus norvegicus 81 Fabp3 ENSRNOG00000012879 ENSRNOT00000017325 2 1 1 81 5 148528947 148532437 CATGAAGTCACTCGGTGTG 59 148532479 148532500 CCCATTCTTCTCAATGATTGTG 58 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604,ENSRNOT00000083665 1 2 2 80 6 123404412 123404433 CAGTGAGACATAATTTGTCCCT 58 123356247 123404374 ATGATCCTTTCCCAATACTCTG 58 NA Rattus norvegicus 81 LOC100366231 ENSRNOG00000048244 ENSRNOT00000074040 2 1 1 80 1 147061190 147061303 TTATCGTGGAAACGCAAGAG 59 147061129 147061149 TTTCTTCAGAGCAGTCATGGA 60 NA Rattus norvegicus 81 LOC100360647 ENSRNOG00000020982 ENSRNOT00000028481 2 1 1 119 1 221420832 221420850 AGATCAAGTCGTGCTTCTG 58 221420933 221421444 TGAACTTTACCTCCCAGCA 59 NA Rattus norvegicus 81 RGD1309783 ENSRNOG00000004809 ENSRNOT00000006507 3 1 1 84 3 102428801 102428981 ACACCTCTGATGAAGGCTG 59 102428735 102428753 CCATACGGTTTGGATCAGC 59 NA Rattus norvegicus 81 Sec61g-ps1 ENSRNOG00000049451 ENSRNOT00000072285 1 1 1 81 5 56771355 56771374 TGAAACTGATCCACATCCCT 59 56769525 56769543 ATCAGATCCGAGGGAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428,ENSRNOT00000081977 3 2 2 118 16 20888688 20888707 ACGAAGAGGAACTGGATTCC 60 20888226 20888607 CTGTTGATGATGGCCTTGG 59 NA Rattus norvegicus 81 Rn60_10_0645.1 ENSRNOG00000029091 ENSRNOT00000050325 3 1 1 60 10 67250564 67250586 CTTCTGATATTCAGGCGAAAGAG 59 67250606 67250624 CCAAGGGTTGAGAATCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ac1576 ENSRNOG00000058372 ENSRNOT00000078646 3 1 1 86 10 71343970 71344838 AAAGAAACTAATGAGGCGCG 59 71343903 71343922 TTCATCACACTGAAGGGTCC 60 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000075967 1 1 3 80 9 94542029 94542048 GGATGATGCAGTGAAAGAGG 59 94542088 94543166 CCTACAGATTTACTGAGACTGG 58 NA Rattus norvegicus 81 RGD1560771 ENSRNOG00000042103 ENSRNOT00000066351 3 1 1 60 15 32412347 32412367 ATTGAGCAGAGACAAAGACAG 58 32412307 32412327 GACATCTGAATGGCTCAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679087 ENSRNOG00000016330 ENSRNOT00000061333 1 1 1 60 5 25254682 25254702 TCAAATGAGAAGACACAAGCC 59 25254722 25254742 ACAGACAGGAACAGTCATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erf ENSRNOG00000020426 ENSRNOT00000027684 3 1 1 98 1 82116269 82116287 ATCAAGGACCCTGATGAGG 59 82115842 82116207 ATAGTAATAGCGCAGGGCC 59 NA Rattus norvegicus 81 Ceacam16 ENSRNOG00000031391 ENSRNOT00000045306 1 1 1 80 1 80780871 80780890 CCTACATCCTGCAAACTCTG 58 80780339 80780828 GGGCCAGGATCTCATAGAC 59 NA Rattus norvegicus 81 Fpr1 ENSRNOG00000011174 ENSRNOT00000014842 3 1 1 60 1 59766671 59766690 ACCTCAAAGCACTCTAACTG 58 59766713 59766731 GCAGCTATTGAAGAAAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 3 3 3 85 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63081 63099 AGCAACTGAACAGTGAGAG 57 NA Rattus norvegicus 81 Yme1l1 ENSRNOG00000017100 ENSRNOT00000023395 1 1 1 80 17 89709970 89709990 TTACACAAAGGATGCAATGCC 60 89706319 89709929 GGCAACAGTGATACATGTCC 59 NA Rattus norvegicus 81 Sptb ENSRNOG00000006911 ENSRNOT00000009028 1 1 1 80 6 99685864 99686302 CTTAGAGGATGAGACGCTCTG 60 99685804 99685823 ACTGTTTGCAGATTAGTGCC 59 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709,ENSRNOT00000057160 3 2 2 80 13 113709671 113709690 TCCTTGAATCTAGCCCAGTC 59 113709732 113709985 TTTGCTGGAAAGTTCTGTGC 60 NA Rattus norvegicus 81 Mrrf ENSRNOG00000025997 ENSRNOT00000033047 3 1 1 80 3 15505907 15517809 CTCATCGAGAAGCAGATCAG 58 15517852 15517870 TTCTTTGGTCTTTGCTGCC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000078355 3 1 3 60 20 3317318 3317337 CTTTCGTTAGCTACTGCGTG 59 3317360 3317378 CCCTTAATCAACCTCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305587 ENSRNOG00000000551 ENSRNOT00000000662 2 1 1 124 20 31735991 31736009 CAACAGAGGAATAGCAGCC 58 31735089 31735107 CTGAAAGGAGATTGGGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 3 2 2 81 1 90512427 90517107 CTGACTCCAGAATAAGCCGT 60 90512365 90512386 CGGTCGATGAAATAATGTTGCT 60 NA Rattus norvegicus 81 AABR07017597.1 ENSRNOG00000049670 ENSRNOT00000073133 3 1 1 96 15 29109018 29109224 TTCAGCTACACAGGGTGAG 59 29109282 29109302 GAAGTACAGTTGAAAGAGGCC 59 NA Rattus norvegicus 81 Jak1 ENSRNOG00000011157 ENSRNOT00000064542 1 1 1 80 5 119989428 119989448 GAACTATGATCCCAACCAGAG 58 119989259 119989386 ATGTCTGGATTCTGCTCCT 58 NA Rattus norvegicus 81 Mpped1 ENSRNOG00000010834 ENSRNOT00000014720 3 1 1 80 7 124747109 124749166 CACATCCATGAAGGGTATGGA 60 124749206 124749226 CTGATAGTTCACAGTGCACAC 59 NA Rattus norvegicus 81 Tm9sf3 ENSRNOG00000013443 ENSRNOT00000018043 3 1 1 80 1 260472353 260472372 CTGTGCATTGTGACTGTCTG 60 260471457 260472312 TGTCCATTGCCACCTATAGTC 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 1 4 8 84 6 128078985 128079007 CATCAAAGAAGTCTTCTCCACAC 60 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 1 2 2 80 1 191636395 191638321 GTAGAAAGGGCATTAAAGTCCTG 60 191636337 191636355 TTTGGTCTCCTTGTCCCAC 60 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 3 2 2 80 1 191627933 191627956 GACTACATCTATGACCTGTATGCT 60 191622355 191627899 GTTCTTACAGTATGCTGTGTAGTG 60 NA Rattus norvegicus 81 Actl10 ENSRNOG00000036864 ENSRNOT00000055335 3 1 1 61 3 150056281 150056299 TTACACAGCTCAAGAAGCG 58 150056323 150056342 GTCACAAATATCACCCTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040947.1 ENSRNOG00000011100 ENSRNOT00000014756 1 1 1 95 X 115425507 115425574 AGAGATGGCTAGTGTCGTG 59 115425430 115425448 ATGACTGACACCAAAGCCA 60 NA Rattus norvegicus 81 Olr840 ENSRNOG00000030761 ENSRNOT00000052426 1 1 1 60 5 59327332 59327350 ACTTCACCTGTGAGATCCT 58 59327371 59327392 ATATTGATGGAGATGTCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mospd4 ENSRNOG00000003575 ENSRNOT00000004747 3 1 1 60 18 40452140 40452159 GTCAAGCACAAGTTCATGGT 59 40452099 40452118 CCTCCAGATCTGAAGTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a13-ps1 ENSRNOG00000033714 ENSRNOT00000054806 1 1 1 86 1 227371459 227380194 TTATGGACAAGCAAAGCTGG 59 227371392 227371410 GAATATGTGAGGGCGACCA 60 NA Rattus norvegicus 81 Pcbp3 ENSRNOG00000001245 ENSRNOT00000001675 1 1 1 80 20 12591047 12591065 AACGTAACCCTGACCATCC 59 12592279 12593125 CTTTACTGTTTCTCCTTTCTTCCC 60 NA Rattus norvegicus 81 Nsg2 ENSRNOG00000020644 ENSRNOT00000028069 1 1 1 80 10 15909756 15909774 AGAACAGAATACCAGCCGG 60 15872009 15909715 AAGAATGGTGACCGTAAATTCG 59 NA Rattus norvegicus 81 Csf3r ENSRNOG00000008759 ENSRNOT00000011694 2 1 1 80 5 144049132 144049813 CCATCATGACAGAGGAAACC 58 144049855 144049874 CCAGTTCAGTGATCTTGGTG 59 NA Rattus norvegicus 81 Mmp12 ENSRNOG00000030187 ENSRNOT00000011727 3 1 1 80 8 5606659 5606677 GCTGCTTGTGTCCTTACAG 59 5606719 5607740 CTTGACAAGTACCATTCAGCA 59 NA Rattus norvegicus 81 Celf3 ENSRNOG00000020875 ENSRNOT00000028324 1 1 1 80 2 195725579 195725991 GAGAGTCGAGGAGAAGACC 59 195726034 195726053 AAACATCTTCCGGACATCCT 59 NA Rattus norvegicus 81 Trpc4ap ENSRNOG00000019152 ENSRNOT00000026091 1 1 1 80 3 151160876 151160897 CTGATTTGGAGGAAGCATTCAG 60 151159651 151160835 GGTGATATCCGGGCTACAG 59 NA Rattus norvegicus 81 Trpc4ap ENSRNOG00000019152 ENSRNOT00000026091 2 1 1 80 3 151157813 151159609 CCACCATGAGAACAAGTACC 58 151157752 151157770 GGGATGTTGGCTTTCAGAG 59 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000071735 2 1 2 82 6 129423254 129423272 CACTGTTCTTGGAAGCGAC 59 129423315 129425979 TTGAACATTTCAATGCCCAGAG 60 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155,ENSRNOT00000022731 3 2 2 83 2 208620094 208621480 GATTCTTACCCTGGCCCTG 60 208620029 208620050 TGGAGATCCAAATTTCATTGGC 60 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 1 2 2 80 3 11265231 11265250 CCCATTCTCAAGAAGTCTCC 58 11265290 11267264 TTACAATGTCCAGTTTCCAGAG 58 NA Rattus norvegicus 81 AABR07071968.1 ENSRNOG00000033924 ENSRNOT00000050823 1 1 1 60 1 178367650 178367669 AAGAACAAAGGCATCACCTG 59 178367609 178367630 TTCTGGGAATCTCCAAATACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr16 ENSRNOG00000031741 ENSRNOT00000052199 1 1 1 60 1 149858625 149858643 GCCTCCAGCACTTAATCCT 60 149858583 149858604 CAGAGAACACTTGACCTTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mall ENSRNOG00000015599 ENSRNOT00000021082 3 1 1 60 3 120276579 120276598 CTACATCAATGTTGCAGCCT 59 120273890 120273909 ATGCAGGATATAGAGCAGCG 60 NA DesignNoJunction Rattus norvegicus 81 Mir181b1 ENSRNOG00000035590 ENSRNOT00000053713 2 1 1 60 13 54952937 54952956 CAACATTCATTGCTGTCGGT 60 54952977 54952997 TGCATTCATTGTTCAGTGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728,ENSRNOT00000042506 3 2 2 80 10 72179113 72187979 CTCTCACGATGGTGATGGA 59 72179051 72179069 ACTGCTTTAGTTGTGCACC 59 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000081032,ENSRNOT00000021196 1 2 2 129 7 126423887 126429684 GCAGAAAGGTTCTGGAGGA 59 126423776 126423794 TTCTCCTTGAGTAGGTGGC 59 NA Rattus norvegicus 81 Prr16 ENSRNOG00000019744 ENSRNOT00000026724 2 1 1 60 18 46149336 46149355 GCTATTGTCCTGACTGTGAG 58 46149378 46149396 CTGTGTAAATGGACCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ltb4r2 ENSRNOG00000020382 ENSRNOT00000027619 3 1 1 60 15 34447745 34447763 TTTACTGCGGGTGATTTGC 59 34447787 34447805 CTTCGAAGAGTCGAGTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema3g ENSRNOG00000018952 ENSRNOT00000025656 3 1 1 80 16 7303723 7306225 GCTCTCCTACAGAGATCTCC 59 7306268 7306286 ATGACTTGGAGGTCTAGGG 58 NA Rattus norvegicus 81 Serpina4 ENSRNOG00000009788 ENSRNOT00000013045 1 1 1 80 6 127747133 127747153 AAATTTGGTCAGTGACCTGAG 59 127747193 127749491 GGTTTCTTCCAAAGACCTTGG 60 NA Rattus norvegicus 81 LOC100361079 ENSRNOG00000002340 ENSRNOT00000003180 1 1 1 60 1 89258624 89258726 CAAGTTTATCAAGAAGAGGGTGG 60 89258586 89258604 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 AABR07015081.2 ENSRNOG00000054945 ENSRNOT00000087247 1 1 1 81 14 46657954 46657972 GATCCCTACAACTCGGTGG 60 46654990 46657909 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 Gnrhr ENSRNOG00000002011 ENSRNOT00000002755 3 1 1 80 14 23493742 23493762 ATCATGCTAATCTGCAATGCC 60 23493803 23496667 ATTCAGCTGTAGTTTGCGTG 59 NA Rattus norvegicus 81 LOC100912327 ENSRNOG00000046038 ENSRNOT00000072957 3 1 1 60 5 69170957 69170975 TTGCTTCTTGGCATGATGG 59 69170915 69170934 AGTATCTCAGAGGGTTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829,ENSRNOT00000071595 3 2 2 80 10 51532477 51532496 TTATCTCCGAGAGTTGCCAG 59 51527175 51532436 TGCTCCTGGATATTAGAAGCC 60 NA Rattus norvegicus 81 AABR07051611.1 ENSRNOG00000049024 ENSRNOT00000073021 1 1 1 80 3 17890007 17890390 GCTTTGGATTCTGGGAACC 59 17890433 17890452 ACTGATTGTCCAATGGTAGC 58 NA Rattus norvegicus 81 AABR07051611.1 ENSRNOG00000049024 ENSRNOT00000073021 2 1 1 81 3 17890007 17890390 GCTTTGGATTCTGGGAACC 59 17890433 17890453 GACTGATTGTCCAATGGTAGC 59 NA Rattus norvegicus 81 Emc7 ENSRNOG00000005884 ENSRNOT00000008364 3 1 1 80 3 103945619 103949780 GTCGGCTTCCTTAAGACAG 58 103949821 103949842 TGGAGAAATAACTTCCACTACG 58 NA Rattus norvegicus 81 Acrv1 ENSRNOG00000008508 ENSRNOT00000011309 2 1 1 80 8 39165047 39165895 TTGGATCTTCCAGAGGAGC 59 39165938 39165957 AAAGTTGCTGAACAGAAGCT 58 NA Rattus norvegicus 81 Ms4a10 ENSRNOG00000020932 ENSRNOT00000028410 1 1 1 80 1 227020659 227020677 TGCCAAGGACCTCTTTCTG 60 227019569 227020616 CTTTGGATGTAGCTTGTGGG 59 NA Rattus norvegicus 81 Pip4k2a ENSRNOG00000016670 ENSRNOT00000022375 2 1 1 93 17 85538649 85543758 GATGTCGAGTTCCTTGCAC 59 85538574 85538592 ACTCAACCTCCTCTTGCTC 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 3 5 9 74 9 81537290 81543844 AGGAGTTCAAAGAAGGACG 57 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000084722 2 1 3 253 3 147480811 147480830 AATAGTGACCAGAAAGGCTC 57 147477880 147477898 TTAGCCTTATCAGCCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atp5i ENSRNOG00000000064 ENSRNOT00000000072 2 1 1 80 14 2325886 2325904 AGAGAAGAATAGCAGCGGA 58 2325948 2326361 CATCTTCAGCTTCTGCCAG 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138,ENSRNOT00000073528 3 2 2 80 1 1777876 1777898 GTTGAGTATTTGGGATGTCAGAC 60 1777937 1779051 TGAACTTCCCACATTTCAGC 59 NA Rattus norvegicus 81 Pih1d2 ENSRNOG00000009965 ENSRNOT00000013242 3 1 1 83 8 55052878 55052896 ACAATCAGCCACTCATCCT 59 55052940 55054196 TCAATGATGGTACAAGCATCTG 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125,ENSRNOT00000090170 1 2 2 80 13 49907376 49907394 CAGAAAGCCACAAAGAGGA 58 49907436 49908176 CCCATCATACACCAACATCTC 59 NA Rattus norvegicus 81 Nt5dc2 ENSRNOG00000018358 ENSRNOT00000024840 2 1 1 80 16 7219873 7219892 ACAGAACAGTACATGCACTC 58 7219935 7220063 AGCATCCTGATAAGTCTGC 57 NA Rattus norvegicus 81 Bmi1 ENSRNOG00000016585 ENSRNOT00000064257 2 1 1 96 17 85366774 85366793 AGAAGTTGCAGATGAGGACC 60 85366852 85367026 TACTTTCCGATCCGACCTG 59 NA Rattus norvegicus 81 Fut11 ENSRNOG00000009274 ENSRNOT00000012300 1 1 1 80 15 4033674 4033692 ACACATGGACTGTCCAGTG 60 4031642 4033631 CACATTTCCTTCCAGCTGTC 59 NA Rattus norvegicus 81 Slc35f5 ENSRNOG00000003403 ENSRNOT00000004581 3 1 1 80 13 41892370 41898174 AGTAGTTCTTTGAGTGAACCTC 58 41898214 41898233 AATGTTTGTGCTCTCAAGCT 58 NA Rattus norvegicus 81 Als2cr11 ENSRNOG00000012637 ENSRNOT00000017517 2 1 1 80 9 65841299 65841319 AGAAGAGCTTGAAAGAACGAC 59 65834001 65835129 TCACTGTAATCCACTAACTCGT 59 NA Rattus norvegicus 81 Bdkrb1 ENSRNOG00000004488 ENSRNOT00000005953 2 1 1 138 6 129438235 129439358 TTTCTATCCGGACCACAGC 60 129439460 129439478 TCGCAGGAGGTAATGTTGG 60 NA InUTR Rattus norvegicus 81 Dpyd ENSRNOG00000017105 ENSRNOT00000086125 2 1 1 80 2 222576362 222576381 CAGAGTCCACCCACTATGAG 59 222576424 222667637 GCTTGGAAGTTTCTGTCCC 59 NA Rattus norvegicus 81 Mllt11 ENSRNOG00000021110 ENSRNOT00000028664 1 1 1 83 2 196394260 196402082 GCTAACAGGGAATCATGCG 59 196394195 196394213 GATCCAGTTCTGGGATGGG 60 NA InUTR Rattus norvegicus 81 Katnbl1 ENSRNOG00000005814 ENSRNOT00000007688 1 1 1 80 3 103900535 103900556 GAATGTAGCTTTGACTTTCTGG 58 103900595 103901211 ACTCCAAGGTCTTCTATCCTC 58 NA Rattus norvegicus 81 Fgf6 ENSRNOG00000053662 ENSRNOT00000081426 3 1 1 108 4 159564048 159564066 GACAGCGGAGACTCTACTG 59 159564138 159565198 ATTTCCAGCAGGCTGTAGG 60 NA Rattus norvegicus 81 Pbp-ps ENSRNOG00000052369 ENSRNOT00000084901 2 1 1 60 20 2182459 2182478 CCAAGAGGTCTGAAGATCAC 58 2182418 2182439 TGGTATTTCTTGTATGAGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2b2 ENSRNOG00000001425 ENSRNOT00000001935 1 1 1 97 12 23494444 23494462 CAGTGAGGAAGACACAGGG 60 23494523 23494629 GCATGTCTGCTTCTGTCAG 59 NA Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000017730 3 1 2 108 15 28732982 28745386 CATCTGAGAACGGTGATGC 59 28732892 28732910 CAACATGCGTTCTGGTGAG 60 NA Rattus norvegicus 81 Zhx2 ENSRNOG00000005417 ENSRNOT00000007326 3 1 1 80 7 97632096 97693038 CAGACACTGATATGAAGCCT 57 97693079 97693099 GTGTTTCAGAAGGATTTCAGC 58 NA InUTR Rattus norvegicus 81 Cpne6 ENSRNOG00000018399 ENSRNOT00000024978 2 1 1 80 15 34192393 34192911 CCTGAATGTGAAGAGATCTCAG 58 34192951 34192970 GTTGGTAGGACCATAGAGCT 59 NA Rattus norvegicus 81 Pom121 ENSRNOG00000001449 ENSRNOT00000001968 2 1 1 81 12 24333661 24333679 AACCATGTCACCAGTCCAG 60 24333724 24334018 GTGGCTGGATCTGTAACCT 59 NA Rattus norvegicus 81 Olr197 ENSRNOG00000017379 ENSRNOT00000023335 3 1 1 60 1 170091156 170091177 ATTAAGACCAAGCAGATCAGAG 58 170091117 170091136 GTTCAATCTTCTTGGAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir331 ENSRNOG00000035543 ENSRNOT00000053666 2 1 1 60 7 34881149 34881168 GTTCTAGGTATGGTCCCAGG 59 34881108 34881126 GGTTCTAGGATAGGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017694.1 ENSRNOG00000047938 ENSRNOT00000074419 2 1 1 104 15 30174047 30174160 TTCTCCTAAGAGTTGCCCA 58 30173961 30173979 CAGGTGTGGAATACTTGCA 58 NA Rattus norvegicus 81 Clrn1 ENSRNOG00000042477 ENSRNOT00000064833 1 1 1 82 2 149067468 149088498 GTTCTCATTCTTCCCAGATTTGG 60 149067408 149067429 CGACAAGAATCATGGAGAAGAG 59 NA Rattus norvegicus 81 LOC687104 ENSRNOG00000050455 ENSRNOT00000008475 1 1 1 60 3 78271121 78271140 GTCCTCTTCTTTGTTCCCTG 58 78271080 78271101 CAATGGGTAAAGTAGAAGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1657 ENSRNOG00000059328 ENSRNOT00000092195 1 1 1 60 17 44947647 44947667 ATATACATGTACCTCCAGCCA 58 44947607 44947625 GAGTGAGAAACTTGCCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nap1l3 ENSRNOG00000029087 ENSRNOT00000049956 1 1 1 60 X 95061437 95061456 CAAGCAGTAAGAAATCGGGT 58 95061396 95061417 CTACTTTGTCACACTCATTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsnaxip1 ENSRNOG00000018954 ENSRNOT00000025686 1 1 1 80 19 37810943 37811088 TTGATGGGAAAGACTTTGGAG 58 37811128 37811148 AGCATTTATCAGCTCCTTCAG 58 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 2 2 2 80 9 81842001 81842020 CCAGAGTTCCTTCAATCCCA 60 81842062 81842672 CTTTGACCACTGATCACCTG 59 NA Rattus norvegicus 81 Clec4a3 ENSRNOG00000010018 ENSRNOT00000013308 1 1 1 80 4 155916432 155918804 CACTCTCGGAAGACAAAGTC 58 155916371 155916389 CAGTGGAAGGGAAGTAGCA 59 NA Rattus norvegicus 81 Slc16a8 ENSRNOG00000012090 ENSRNOT00000016247 3 1 1 164 7 120489132 120489290 CTTTGCAGGAAGCAGAAGC 60 120488986 120489004 TGAGCTCTCGGAAGAAGAC 59 NA InUTR Rattus norvegicus 81 AABR07053304.1 ENSRNOG00000050529 ENSRNOT00000042764 1 1 1 60 3 98695653 98695673 ATTCGTCCTATTAGCTTCCAC 58 98695695 98695713 ACAGGTGAACTCGGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1601 ENSRNOG00000003560 ENSRNOT00000004728 3 1 1 60 13 92412959 92412978 AGTTATGGCCTATGATCGCT 59 92412999 92413019 CATGAGACTAGGGTAACGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcc1 ENSRNOG00000048309 ENSRNOT00000072679 2 1 1 80 3 151454850 151456026 AACACAAGTAAGCTGTCCAC 59 151454789 151454809 TTCGATTATCTTCGTGAAGGG 58 NA Rattus norvegicus 81 Thbs2 ENSRNOG00000010529 ENSRNOT00000014552 1 1 1 80 1 56658701 56658719 AAACATTGGCTGGAAGGAC 58 56657230 56658659 ACTAAGACTCTCATGTAGCCT 58 NA Rattus norvegicus 81 Thbs2 ENSRNOG00000010529 ENSRNOT00000014552 3 1 1 80 1 56675018 56675036 ACATGATGAACGAGCTGTC 58 56673397 56674975 GGTTATCGCTAGACACTCTC 57 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 1 2 2 80 14 86394419 86394438 TGACCATCAGATTTGTCTGC 58 86394131 86394377 ATATCCAAGTGTACACGCAG 58 NA Rattus norvegicus 81 Adora2b ENSRNOG00000002922 ENSRNOT00000003966 2 1 1 80 10 48569937 48569956 CAGAGCTCCATCTTTAGCCT 59 48569997 48584979 CAAACCTTTATACCTGAGCGG 59 NA Rattus norvegicus 81 AABR07060995.1 ENSRNOG00000053275 ENSRNOT00000071605 1 1 1 60 4 102403497 102403515 GAGAGTCAGCTTCCATCAC 58 102403537 102403557 GTCTTGCCGTCTTTGTATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000002862 3 1 2 80 14 33550962 33553177 AAGATTCAGACGGGACTGAG 59 33550901 33550920 GAAGCTGCATGATGTAAGCC 60 NA Rattus norvegicus 81 Arpin ENSRNOG00000014589 ENSRNOT00000078857,ENSRNOT00000019568 2 2 2 80 1 141667672 141668743 CATCTTTCAAGGTGGAGGC 59 141667610 141667629 GCTCAGGCTTATTTACCAGG 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 1 2 2 80 4 157483388 157483589 CTGACTACTTAGCTGAAGCC 58 157483327 157483345 TGACAACTGACAGATGTCG 58 NA Rattus norvegicus 81 Slc14a2 ENSRNOG00000061714 ENSRNOT00000078016 1 1 1 80 18 74546610 74547092 CAATATGATGGCAGTGGTTGG 60 74546550 74546569 CTTGTGAGGAGAAGGAAGGT 59 NA Rattus norvegicus 81 LOC100910928 ENSRNOG00000048744 ENSRNOT00000071756 3 1 1 60 13 9465529 9465549 ACTGGTGTTAGTGAACCTCTC 60 9465570 9465589 AGATGGGATTCTCAGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 1 2 2 80 3 120026857 120031382 TCCACTTTGAGGACTTTGTG 58 120026796 120026814 GATTGAAGGCCCACTTGAG 59 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 2 2 2 81 3 120026857 120031383 ATCCACTTTGAGGACTTTGTG 59 120026796 120026814 GATTGAAGGCCCACTTGAG 59 NA Rattus norvegicus 81 Sesn2 ENSRNOG00000042785 ENSRNOT00000067455 1 1 1 80 5 150690826 150690844 TTCCCAGGAGGAAATGGAG 59 150690333 150690782 TCCAGAATATCCGCTGAGG 59 NA Rattus norvegicus 81 Sesn2 ENSRNOG00000042785 ENSRNOT00000067455 2 1 1 80 5 150690826 150690845 CTTCCCAGGAGGAAATGGAG 60 150690334 150690783 CCAGAATATCCGCTGAGGG 60 NA Rattus norvegicus 81 Ppfia4 ENSRNOG00000003494 ENSRNOT00000039540 2 1 1 80 13 51143035 51143573 CATGAGATCAAGGATGTGCTG 59 51142975 51142993 GGCATAATCCCTTAGCCCT 59 NA Rattus norvegicus 81 Pcdhb1 ENSRNOG00000020103 ENSRNOT00000027229 2 1 1 60 18 30285195 30285216 AAACTCAGATAACGGAAAGCTC 59 30285234 30285255 GTCTTGAATGGCCTCATAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aasdh ENSRNOG00000002137 ENSRNOT00000002907 2 1 1 80 14 33624555 33624574 GGAGGAATTCGGGAAATTGG 59 33624617 33625297 CGGGATCTGAAGAATCCCT 59 NA Rattus norvegicus 81 Tap1 ENSRNOG00000000457 ENSRNOT00000000529,ENSRNOT00000085225 2 2 3 60 20 3985664 3985682 ATCACCACTACCTGCACAC 60 3985957 3985976 CTTCCAAATAGCAGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sdf2l1 ENSRNOG00000001859 ENSRNOT00000002540 1 1 1 80 11 88123023 88123890 ATCCAACAACCAGGAGGTG 60 88123933 88123952 CCAGAACATCGTACTGTCCA 60 NA Rattus norvegicus 81 Npepl1 ENSRNOG00000028384 ENSRNOT00000034915 1 1 1 80 3 172198817 172199217 CTTCCTTGAGGAGATTAGCCA 59 172199256 172199277 TTGGTCTTTAGCTGTTCATCAC 59 NA Rattus norvegicus 81 LOC691272 ENSRNOG00000043229 ENSRNOT00000064531 2 1 1 80 X 124047506 124052288 TGCACTCCAAAGGAAAGAG 58 124045912 124045930 GCTCTTCGTTTGTTGAACC 58 NA Rattus norvegicus 81 Sult5a1 ENSRNOG00000015695 ENSRNOT00000051452 1 1 1 85 19 55966967 55966985 CTAGAGTCCCTGAAGGCAG 59 55957801 55966919 CAGGTGGTACCTGACTTAGG 59 NA Rattus norvegicus 81 Ermard ENSRNOG00000015230 ENSRNOT00000059845 3 1 1 80 1 56986236 56987911 TTGGACATGCTGTGATGGA 59 56987954 56987973 CATGCCACAAGACGTTTCTC 60 NA Rattus norvegicus 81 Rnpepl1 ENSRNOG00000045775 ENSRNOT00000071411 1 1 1 80 9 100086087 100086483 AGAACCAGGAGTGAATCCC 59 100086527 100086545 TGGGACAGGTAGTAGACGA 59 NA Rattus norvegicus 81 Cyp2b21 ENSRNOG00000032004 ENSRNOT00000049175 2 1 1 81 1 83411264 83412051 GAACTGAAGAAATACAAGGGAGC 60 83411205 83411225 CAATGGAGCAGATGATGTTGG 60 NA Rattus norvegicus 81 Ddit4 ENSRNOG00000057078 ENSRNOT00000085026 3 1 1 106 20 29510954 29510972 CAGAGAAGAGGGCCTTGAC 60 29510616 29510885 CCAGGTATGAGGAGTCTTCC 59 NA Rattus norvegicus 81 Mir218-2 ENSRNOG00000035481 ENSRNOT00000053604 1 1 1 60 10 20428682 20428702 CCTTTGTGCTTGATCTAACCA 59 20428723 20428742 GCTTGACAGAACCATGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hrh4 ENSRNOG00000016887 ENSRNOT00000022744 3 1 1 81 18 4365647 4374687 TTCTTCGTGGGTGTCATCTC 60 4374730 4374749 ACATGCAGATTCCACTTCCA 60 NA Rattus norvegicus 81 Cntn2 ENSRNOG00000009033 ENSRNOT00000012190 1 1 1 80 13 49289478 49289498 ATCTTCAGAGATGAACGTGAG 58 49288566 49289438 CAGTAGCGAATCTCATATCCC 58 NA Rattus norvegicus 81 Il20 ENSRNOG00000004633 ENSRNOT00000067006 3 1 1 80 13 47646867 47646988 AAGACACAAAGCTTTCGGA 58 47646805 47646824 GGTAGACTTTGAACACCCTG 58 NA Rattus norvegicus 81 Sash3 ENSRNOG00000004409 ENSRNOT00000006035 3 1 1 81 X 134992321 134992339 GAGCTCAACATCATGGACC 58 134992384 134992901 CACTGCCAGTGTCATAGTC 58 NA Rattus norvegicus 81 Impdh1 ENSRNOG00000020032 ENSRNOT00000027173 3 1 1 80 4 56480678 56480923 AGCGATACTTCAGTGAGGG 59 56480616 56480636 TCTGAATGGAGCCTTTATCCT 59 NA Rattus norvegicus 81 Anxa1 ENSRNOG00000017469 ENSRNOT00000023664 3 1 1 80 1 237900155 237901650 CTAGAGTCTACAGAGAAGAGCT 58 237900096 237900114 AGGCATTACGAAAGTCTCC 57 NA Rattus norvegicus 81 Bcl2l10 ENSRNOG00000009308 ENSRNOT00000012409 3 1 1 83 8 82289096 82289115 GTACAATCGACTCACAGGAC 58 82294132 82294151 GGGTTCTTGAAGAATTGGCA 59 NA DesignNoJunction Rattus norvegicus 81 Cpxm2 ENSRNOG00000015902 ENSRNOT00000051853 2 1 1 80 1 204060770 204060790 ACACAGAGGAATTTCAGAAGG 58 204055079 204060731 TGAAGTCATTTAGACTTCCAGC 59 NA Rattus norvegicus 81 LOC100911637 ENSRNOG00000048471 ENSRNOT00000070854 1 1 1 60 3 149741621 149741639 TTCTGTTCTGAGTACCGCC 59 149741661 149741681 CATCACCAATGGATAAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2l3 ENSRNOG00000025198 ENSRNOT00000033123 2 1 1 80 7 29978685 29980434 CTTACTAGGTATTGACATTAAGGCG 60 29978629 29978648 ACATTGATTAGCTGGCACAG 59 NA Rattus norvegicus 81 Olr1283 ENSRNOG00000057810 ENSRNOT00000083638 1 1 1 60 15 35813554 35813573 CCTCTTCCTCCTCTTCACAG 59 35813596 35813614 GATCATGCCCAAGTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tab1 ENSRNOG00000017285 ENSRNOT00000067904 1 1 1 84 7 121370358 121370376 AGAAGGAGATCTCGGGAGG 60 121370423 121372676 CTGTTCGTACCAACATTGGC 60 NA Rattus norvegicus 81 Ppp1r7 ENSRNOG00000016974 ENSRNOT00000022854 3 1 1 81 9 100495608 100498122 CCTGGAGAACAATAACAAACTC 57 100498162 100498182 TGTCAGATGGCTGATATTCTC 57 NA Rattus norvegicus 81 AABR07062129.1 ENSRNOG00000048726 ENSRNOT00000010098 3 1 1 85 4 162300254 162300272 GTAACTGGACATTGAGCCA 58 162300320 162300905 TAGGAAATTCAGCTCCTCCT 58 NA Rattus norvegicus 81 AABR07006774.1 ENSRNOG00000050417 ENSRNOT00000075515 2 1 1 89 1 257727284 257727307 CAGAAGACATAACATCAGAGAAGC 60 257727355 257729178 AAGCAAAGACCTGAGTCCA 59 NA Rattus norvegicus 81 Sgk494 ENSRNOG00000037214 ENSRNOT00000056217 3 1 1 80 10 65555637 65555729 CTTCAATACATGGCTCCAGAG 59 65555771 65555789 AAGCAATACTCCCAGGGAC 59 NA Rattus norvegicus 81 Dnajc22 ENSRNOG00000053498 ENSRNOT00000087932 2 1 1 61 7 140784260 140784278 CAGGATGAGAAACGTCAGC 59 140786601 140786619 TCATTGGTGGCTCCTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Olr481 ENSRNOG00000031051 ENSRNOT00000040041 3 1 1 60 3 73484362 73484383 AGCTCAAGTATGTTTCTTCACC 59 73484323 73484343 CATTACAGACAGCAGGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnnbip1 ENSRNOG00000016313 ENSRNOT00000055562 3 1 1 65 5 166491770 166491789 TACATTCAGCAGAAGGTCCG 60 166491817 166492436 GCTGGCAGTCAGATTTGAC 59 NA DesignRelaxed Rattus norvegicus 81 Hist1h4m ENSRNOG00000057690 ENSRNOT00000091201 1 1 1 155 17 44815830 44815848 CTCATCTACGAGGAGACCC 58 44815693 44815711 GAAGCCATAGAGGGTACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angptl2 ENSRNOG00000016678 ENSRNOT00000022585 2 1 1 80 3 12290126 12292211 CATGATGTCTACACAGGAAACTG 60 12292251 12292269 ATTGAGGTTGGAGTGAGCA 59 NA Rattus norvegicus 81 AC115670.1 ENSRNOG00000059342 ENSRNOT00000083706 3 1 1 60 17 45726449 45726468 AACATGAAGTCAAAGGCAGG 59 45726408 45726427 CAGTGAGATGAGATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 3 2 2 80 10 70153524 70154104 CAGTAGCAGAGGTGGAGAG 59 70154148 70154166 GTCTCATCAGCAGCTTTCC 59 NA Rattus norvegicus 81 Bace1 ENSRNOG00000016847 ENSRNOT00000022796 2 1 1 80 8 50160867 50160888 TCCCAGTCATTTCACTTTACCT 60 50160927 50161169 GTAGGTATTGCTGAGGAAGGA 59 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448,ENSRNOT00000045050 2 2 2 80 14 36151481 36154821 TTCAACAGTGATGAAGAGCG 59 36151420 36151438 TTTCTCCCGACTAGCTCTG 59 NA Rattus norvegicus 81 Igsf7 ENSRNOG00000046121 ENSRNOT00000073646 3 1 1 80 10 104851957 104852652 GCACTGCTCAAATTCCAGAG 60 104851502 104851520 AGCTAGACGGGAAGAAAGG 59 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 3 2 2 80 4 56857997 56859678 TTGCTCAGTTGTACTCTACTC 57 56857937 56857956 TAGCAGCCATGATAAAGAGG 57 NA Rattus norvegicus 81 Pcdhb20 ENSRNOG00000033123 ENSRNOT00000048166 3 1 1 60 18 30583902 30583922 TCCCAGAACTACCAGTATGAG 58 30583942 30583962 ATTTGAACTCGTTTGTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 March9 ENSRNOG00000046245 ENSRNOT00000072468 2 1 1 93 7 70343852 70344145 GTCTGCATAGGTCTCATCGT 59 70343778 70343796 AGTTCAGGACCTTCCACTG 59 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 1 1 1 76 14 44548543 44613096 GACACAACCTGATCAAGGC 59 44548485 44548503 CCAACCCTTCTGATGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Maneal ENSRNOG00000025349 ENSRNOT00000038055 3 1 1 94 5 142853123 142854135 GCTCACAACCATCTTGTGTC 60 142852117 142852137 GCCCATGCTATTCTTATACCG 59 NA Rattus norvegicus 81 Hist1h2aa ENSRNOG00000048122 ENSRNOT00000050526 1 1 1 64 17 43422606 43422624 AAGAAGACGCGCATTATCC 58 43422560 43422578 TTATTGAGCTCCTCGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan15 ENSRNOG00000046204 ENSRNOT00000075714 2 1 1 80 20 31813852 31813872 CCGTACTGATATGGTTCATGG 58 31813329 31813811 CACCAAGAAACTGAGGAAGC 59 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311,ENSRNOT00000065909 1 2 2 89 5 59063818 59063836 AAGTGGAGATTTGTGGGCT 59 59063888 59063992 AATTCTTGCACGGAGTTCTC 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 3 1 4 75 2 118547191 118547210 TGTTTATATGGACCAGTGGC 58 118547245 118584893 ACACTTAGGAATATAGGAGCAC 57 NA DesignNoJunction Rattus norvegicus 81 Unc45b ENSRNOG00000009466 ENSRNOT00000064625 2 1 1 80 10 70284574 70284593 TGTTTGAGAACCATGACCAG 58 70284633 70287080 TCTCCTGAACCTCCTTATTGAG 59 NA Rattus norvegicus 81 Tarbp2 ENSRNOG00000042355 ENSRNOT00000064661 1 1 1 90 7 144125352 144125692 ATTGAGATTGGCAGTGGGA 59 144125746 144125764 CATCCAGAGGTACCGTGTG 60 NA Rattus norvegicus 81 Olr1l ENSRNOG00000053124 ENSRNOT00000087016 1 1 1 60 1 64481075 64481093 CTTCATCATCGCTCTCACC 58 64481117 64481135 CAGGAAGAAGTACATCGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 1 2 2 80 17 81240987 81244439 ACCGGAAATGATTAAGACAGAG 58 81244478 81244498 TCTGGTTCTGGTTCTATTGTC 58 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 2 1 1 60 4 56450997 56451123 TGGGTTCTTCGGTACTACTC 59 56450956 56450974 GCCTTGGTAACTCTGACTC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp639 ENSRNOG00000043053 ENSRNOT00000065518 2 1 1 98 2 118910630 118912493 CTTCTCGATATTCAGATTCTTCTGG 59 118912547 118912567 GCTGTCTCATAGAGCAAACAC 59 NA Rattus norvegicus 81 Pdpn ENSRNOG00000014961 ENSRNOT00000020316 2 1 1 80 5 161949290 161950701 CAGATAAGAAAGATGGCTTGGC 60 161949231 161949249 CTCCAATGAAGCCAATGGC 60 NA Rattus norvegicus 81 Clec12b ENSRNOG00000053638 ENSRNOT00000089712 3 1 1 80 4 163145798 163145818 TTGTCCTGGGATTCATCTAGC 60 163142464 163145761 CTCCTTCTCATTAAATAGGGTTGG 59 NA Rattus norvegicus 81 Lamb3 ENSRNOG00000006025 ENSRNOT00000008440 2 1 1 80 13 112062351 112064122 CATCCTGTCTATCAGGAGGA 58 112064165 112064183 TCTCCAGAGAAGGATTCCA 57 NA Rattus norvegicus 81 Rabggtb ENSRNOG00000009992 ENSRNOT00000065997 1 1 1 80 2 260111401 260112367 AAGACCCGAGAAGTTACCA 58 260111339 260111357 ATCCAATGAAGTCTCCCGA 58 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 3 3 3 80 15 4040901 4041093 AGCTGTATCAATGATGTGCC 59 4040840 4040858 AGGACGGTCATAAGCATCC 59 NA Rattus norvegicus 81 Ssbp3 ENSRNOG00000007920 ENSRNOT00000011408 1 1 1 80 5 126640466 126646465 GGTCTAACTTTCCAATGGGT 58 126646508 126646526 ATCCATTCATGTGGTGTGG 58 NA Rattus norvegicus 81 Tdrd12 ENSRNOG00000012719 ENSRNOT00000017021 2 1 1 80 1 91743470 91749718 CAAGCCAGACTTCGATACC 58 91743408 91743428 TTTCTGTACCTCTGTCTCCTC 59 NA Rattus norvegicus 81 LOC100909631 ENSRNOG00000048418 ENSRNOT00000073141 2 1 1 80 3 159114429 159114448 TGAAGTCCATCTTCTTCAGC 58 159114490 159114737 TTGTCCCACCATAGATTCCT 58 NA Rattus norvegicus 81 Tmem179 ENSRNOG00000013128 ENSRNOT00000060943 1 1 1 85 6 137075439 137076643 AATTGCCCAGTTTGGACTG 59 137075372 137075394 GGTAGTTGTGATAAACCTTCAGG 59 NA Rattus norvegicus 81 Tmem179 ENSRNOG00000013128 ENSRNOT00000060943 2 1 1 86 6 137075439 137076643 AATTGCCCAGTTTGGACTG 59 137075371 137075393 CGGTAGTTGTGATAAACCTTCAG 60 NA Rattus norvegicus 81 Sgcd ENSRNOG00000002372 ENSRNOT00000003224 1 1 1 80 10 32280012 32442104 ACTTCACAATTGATGGAATGGG 59 32279953 32279975 GTTGTAAGAACTCTGAGTCTCCT 60 NA Rattus norvegicus 81 Asb17 ENSRNOG00000048832 ENSRNOT00000073873 3 1 1 80 2 260047833 260047852 CAAGAAGATGCCAAGACGTG 60 260047894 260051419 CAGCTGTGTCTCTATCTCCC 59 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 3 2 2 86 1 32338073 32339431 CACCAATAACTGCTATAGAGACG 59 32338009 32338027 AAGGAGAAGACGACGAAGC 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 1 1 2 187 4 161727352 161728159 GGTTAGGAAAGAGGGTCCC 59 161728499 161728767 GTCAATGCAGCACTTGAGG 60 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107,ENSRNOT00000091578 3 2 2 82 2 198990951 198990971 GGGTAGTAGTGATCAAGAAGG 57 198991013 198992382 CCTTGATGATTTGACCTTTCTG 58 NA Rattus norvegicus 81 AABR07028748.1 ENSRNOG00000030638 ENSRNOT00000043042 1 1 1 98 17 84613312 84613330 CTTCCACCTTTGATGCTGG 59 84613134 84613250 GCTGAGGTACCTGATTGGT 59 NA Rattus norvegicus 81 Dennd3 ENSRNOG00000010794 ENSRNOT00000014541 1 1 1 80 7 114804698 114804716 CAAACAGCTCACGGATCAC 59 114804760 114806669 CAGGAGTAGACTGCACTGG 60 NA Rattus norvegicus 81 Rlim ENSRNOG00000002824 ENSRNOT00000091325 2 1 1 80 X 73765712 73765731 TTGCTCAGAAGACTACAGCA 59 73764435 73765670 ATCTGAAGACTCTCCAGCTC 59 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000089138 3 1 2 142 17 6684641 6689007 TGGTTTGAGGAGAAATGCTC 58 6689112 6689130 ATTGACCTCAACAGGAGGG 59 NA InUTR Rattus norvegicus 81 RGD1560028 ENSRNOG00000006782 ENSRNOT00000008947 3 1 1 95 4 96312639 96312658 CAAAGGGCTTTCACAATGCT 60 96320741 96326652 GTCATACTTAATCTCAAGTCTCTGC 60 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321,ENSRNOT00000015482 3 2 2 81 3 149152565 149152583 GCCAGCACTTTAATCTGGC 60 149152628 149153506 ACCATGGCTTTCTCCAGAG 59 NA Rattus norvegicus 81 Pank4 ENSRNOG00000014044 ENSRNOT00000019028 3 1 1 81 5 172375380 172375400 ACTCTTCCTGAGACATGAAGG 59 172375438 172375727 GTACTGGTTAGGATTATCTTGCTC 59 NA Rattus norvegicus 81 Hcrtr2 ENSRNOG00000011251 ENSRNOT00000015824 2 1 1 80 8 83343439 83347464 CTTATTTACAGACTGTGTCAGTGTC 60 83343383 83343401 GACAAATGGCGTACCATCG 59 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000039151 3 1 2 104 3 11812926 11812944 GACAAACCCTTGGGAAAGC 59 11813179 11813295 CCTTGGCATTGCATTGGAG 60 NA Rattus norvegicus 81 Mbnl3 ENSRNOG00000002487 ENSRNOT00000043258 2 1 1 80 X 138404768 138435159 TATGATTCACTAAAGGGTCGGT 59 138404709 138404729 TTCTAGCTGCGACTTTAAGTG 59 NA Rattus norvegicus 81 Ky ENSRNOG00000008210 ENSRNOT00000010992 1 1 1 80 8 110989973 110998750 ATGACAACCAAGGTACTCAG 57 110998790 110998811 CCAAAGAGAACTTCTTAAGCAG 57 NA Rattus norvegicus 81 Ky ENSRNOG00000008210 ENSRNOT00000010992 2 1 1 80 8 110989972 110998750 TATGACAACCAAGGTACTCAG 57 110998789 110998810 CAAAGAGAACTTCTTAAGCAGC 58 NA Rattus norvegicus 81 Tnfaip2 ENSRNOG00000010165 ENSRNOT00000042973 2 1 1 80 6 135894643 135894662 GTTCGAGCTATGTGAAAGGG 59 135894702 135896457 GGGCTGTTCAGAATATCATTGG 60 NA Rattus norvegicus 81 Tnfaip2 ENSRNOG00000010165 ENSRNOT00000042973 3 1 1 80 6 135898162 135898180 GGAGCCTTTGAAAGACCTC 58 135898223 135898996 TTAAACAGTGGCTTCAGGTC 58 NA Rattus norvegicus 81 Gins3 ENSRNOG00000011863 ENSRNOT00000015795 2 1 1 69 19 9839577 9839595 ATATCTCCCAGTCACTGCT 58 9836914 9836932 GAATTCTGGGAGGAGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Glycam1 ENSRNOG00000036826 ENSRNOT00000055270 1 1 1 87 7 145173037 145173055 AACCACAGAGTCAAGAGGC 60 145172730 145172986 TTTCCCTCTGAGGTTGCAG 60 NA Rattus norvegicus 81 Asf1a ENSRNOG00000000415 ENSRNOT00000000471,ENSRNOT00000084420 2 2 2 81 20 34899949 34903658 TTGTGTTTCAGGCTGATGC 59 34903698 34903721 CAGGTAATCAGTACAACTGTTACC 59 NA Rattus norvegicus 81 Dpy19l3 ENSRNOG00000021573 ENSRNOT00000039115 1 1 1 80 1 92008306 92009960 CAATGGACATGAGATGGATGG 59 92008246 92008265 ATCTCTTCACAGAAGCGAGG 60 NA Rattus norvegicus 81 Spata4 ENSRNOG00000048035 ENSRNOT00000071331 2 1 1 82 16 39968854 39968874 GAACAATTCACTGTAAGGCTG 58 39968683 39968813 GCTTCTAATTTCTTGATGGGTG 58 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 1 2 2 80 8 119085452 119085471 AGTCTTTCTTGGTACAACCG 58 119085513 119086672 CCCTTGATGATCTACCTCGT 59 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031,ENSRNOT00000060264 2 2 2 80 5 59399495 59399514 TGAGCTCTGTGAAGTAAACC 58 59399557 59402201 AATTTGCAGCCTTGAACAC 57 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 1 1 1 60 18 75203898 75203916 GGCCTTCAAGATGAATCGC 59 75127374 75203874 CATCCCTGGAGTCATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tcf25 ENSRNOG00000017023 ENSRNOT00000046155 2 1 1 80 19 56186841 56186860 GGCTAAACATGGAAACCCAG 59 56186901 56187927 CTTGCATTAGACTGTTCCGAG 59 NA Rattus norvegicus 81 Rnase6 ENSRNOG00000025597 ENSRNOT00000033739 1 1 1 60 15 28081283 28081302 GTGTCAACAACTATACCCGA 57 28081242 28081263 TGGAAAGATTCATGCAGAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 2 2 2 80 4 163220743 163220763 AGGTCTATCTCGCAATCAGAG 59 163217928 163220702 CTGACTTGAAACGAGTTGGG 59 NA Rattus norvegicus 81 AABR07000156.1 ENSRNOG00000029897 ENSRNOT00000044523 3 1 1 60 1 1545950 1545971 TGTTAGAGCTGCAGTTAAAGAC 59 1545989 1546010 TCTAAATTCATCAGTCGTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfdc3 ENSRNOG00000042162 ENSRNOT00000065751 3 1 1 80 3 161209127 161209147 GATACCTCTTCCTCATGAACG 58 161197477 161209087 CTCTTAATTCGTGCTCTCCTG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 1 1 2 172 9 105944391 105944527 TGATGATTGGGACCACAGG 59 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 Mrpl40 ENSRNOG00000049686 ENSRNOT00000071159 1 1 1 80 11 86279229 86280436 TCTTGGATAAATCAAGACAGCG 59 86280477 86280495 ACCTCTTCAGCAGAAGAGC 59 NA Rattus norvegicus 81 Hhipl1 ENSRNOG00000028390 ENSRNOT00000034883 3 1 1 81 6 132225005 132225026 GTATCAGCGAGTTCAGAATCTC 59 132225063 132228822 TCTTCAATCTCCAGGATTATCCTC 60 NA Rattus norvegicus 81 Lrp12 ENSRNOG00000004152 ENSRNOT00000005668 3 1 1 80 7 78865646 78867170 GAGCGGAGATCATTTGAGAC 59 78865585 78865604 CTGTCCATATGAGGGAGGAG 59 NA Rattus norvegicus 81 Fam181a ENSRNOG00000048412 ENSRNOT00000075399 2 1 1 60 6 128975318 128975336 CTGCTCCACTACCCATGTC 60 128975358 128975378 CCAGACATCTTGAGTGATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887 1 2 3 98 4 161953899 161953917 CAGCTCATTCTGGATTGGA 57 161950723 161953840 CCAGTGATGCTTAATACATCAG 57 NA Rattus norvegicus 81 Kcnk9 ENSRNOG00000009265 ENSRNOT00000012408 3 1 1 98 7 113904651 113937380 AACTATCGGATATGGACATGC 58 113904573 113904591 AACATAACCAGCGTCAGAG 58 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420,ENSRNOT00000072073 2 2 2 80 1 261170949 261170967 TGCACAGTCCAATTACCTG 58 261170326 261170905 ATCTGGACACCTGACTCAC 59 NA Rattus norvegicus 81 Olr1639 ENSRNOG00000050975 ENSRNOT00000044250 1 1 1 60 15 28785524 28785544 CTGTTCTGAAACTAGCCTGTG 59 28785484 28785502 ATGTCCACAAAGGTCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 3 4 7 89 1 83714839 83714858 CTATGAGGACACGGAGTTCC 60 83714910 83716149 ATGTCATAGAGCTGCCCTG 59 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577,ENSRNOT00000083395 1 2 2 80 8 13567995 13569137 GACTTCAAAGATTTGGACCTG 57 13567935 13567953 TGAATTCAGAAGTCGCTGG 58 NA Rattus norvegicus 81 Nhej1 ENSRNOG00000018162 ENSRNOT00000024444 3 1 1 81 9 82312724 82312742 ATTGCTTCGGATGAAGGAC 58 82311884 82312680 CTCTGTCTTCAATCGACCTC 58 NA Rattus norvegicus 81 Olr188 ENSRNOG00000017351 ENSRNOT00000023293 3 1 1 60 1 169945005 169945024 CAGTATACCACGATCCTCAC 57 169945044 169945065 TTCCAATAACTACCGAAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.2 ENSRNOG00000051293 ENSRNOT00000076241 2 1 1 60 X 73977409 73977430 GGAAAGTATGCTCAAGTTACCA 59 73977450 73977469 GCAAGACTGCATTTATGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camk2n2 ENSRNOG00000038184 ENSRNOT00000058131 3 1 1 180 11 83975518 83975536 TCCGAGATCCTACCCTACG 60 83975679 83976479 CATCCTCGATCACCACTCTC 60 NA Rattus norvegicus 81 Lrp8 ENSRNOG00000013064 ENSRNOT00000017575 1 1 1 80 5 127447636 127447654 AATCAAACGGTGCAACCAG 59 127447698 127448398 CCCTCACAAGTTGACTCCT 59 NA Rattus norvegicus 81 Ighg ENSRNOG00000030332 ENSRNOT00000006975 1 1 1 80 6 139141166 139141184 TTCAGATGCAAGGTCACCA 59 139140988 139141122 AACTTGTGTTCTGCCTTCG 59 NA Rattus norvegicus 81 Atp6v1f ENSRNOG00000007392 ENSRNOT00000009737 2 1 1 85 4 56744688 56744706 CTTAACAAGAACCGCCACC 59 56744754 56747226 AGAAACTGCCTGAAAGTGTC 59 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000003088,ENSRNOT00000082183 2 2 2 80 14 36127349 36135024 CATCTGATTCAGGCCAGTG 58 36135068 36135086 TTGAAAGATGTCTGGGCTG 58 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 1 2 3 82 2 261397313 261399390 TTAATTCACTCCGGTGGCT 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 Aacs ENSRNOG00000000967 ENSRNOT00000001292 3 1 1 80 12 36518519 36518678 CATGAAGCCGATGGAAACTC 59 36518458 36518476 TAGCTCTGGGCTTTCAGTG 59 NA Rattus norvegicus 81 Zfp688 ENSRNOG00000018379 ENSRNOT00000024858 3 1 1 88 1 198868467 198868485 ATGGAACAGGAGAGTGAGG 58 198866645 198868415 GGAGTATCTCCTCTCGGAG 58 NA Rattus norvegicus 81 Vrk1 ENSRNOG00000005274 ENSRNOT00000036035 1 1 1 80 6 129878417 129878435 GAACCCAGTGACAATGGAC 59 129878477 129879352 CCATTTCTGAATTTGCTCTGG 58 NA Rattus norvegicus 81 Hiatl1 ENSRNOG00000018227 ENSRNOT00000067979 3 1 1 86 17 2617027 2618597 TTGGCTCAGACAGTCTTCC 59 2616959 2616978 GAGTATCTGGAAACCCAAGC 58 NA Rattus norvegicus 81 RGD1359634 ENSRNOG00000011170 ENSRNOT00000014878 2 1 1 88 7 120373637 120373845 TTTGACGAACTGGTGAAGG 58 120373567 120373585 ATTCCTCGGTATTGCTTGC 58 NA Rattus norvegicus 81 Hira ENSRNOG00000045770 ENSRNOT00000075164 1 1 1 80 11 86230063 86230569 CATGGATATTTCCTGGACTCTG 58 86230004 86230022 GAGAAATCAAGGAACGCCA 58 NA Rattus norvegicus 81 Ccl17 ENSRNOG00000016278 ENSRNOT00000021842 1 1 1 80 19 10619305 10619906 ATGCCATCGTGTTTGAGAC 59 10619243 10619261 GTCTGATGGCCTTCTTCAC 58 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000057362,ENSRNOT00000080701 2 2 2 80 5 126864664 126864683 AGGGACAGAAGTGATTCTGG 59 126864726 126876026 AAGGTTTCTGGATTCCCGT 59 NA Rattus norvegicus 81 Hal ENSRNOG00000004502 ENSRNOT00000006971 2 1 1 80 7 34329228 34329840 CCATTCTTCAGGTGTTGGG 59 34329882 34329902 TTGGCTAAGACATTGATCCTC 58 NA Rattus norvegicus 81 Akap10 ENSRNOG00000002899 ENSRNOT00000003871 2 1 1 80 10 48183144 48183162 AAGATGGACAGGTGGATCC 59 48182359 48183101 CACTAAAGTGCTCTTGCTCC 59 NA Rattus norvegicus 81 AABR07065656.7 ENSRNOG00000055719 ENSRNOT00000042728 2 1 1 66 6 138954276 138954300 CCACTTATTACTGTACAACAGACAC 60 138953961 138953982 CAAACACAGACAAAGAAACTCC 58 NA DesignNoJunction Rattus norvegicus 81 Rnf11l1 ENSRNOG00000057589 ENSRNOT00000080048 1 1 1 82 5 129095005 129112782 CCATATCAGGAACAAGTTCCT 58 129094943 129094961 TCCTCTTCAGTCAGCTGAG 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000029267 ENSRNOT00000050345 1 1 1 60 15 23649624 23649644 TTCAGAATCAAGCGATTCCTG 59 23649584 23649603 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 2 3 3 80 12 25319450 25319468 GCCTCTCATCCAGAATGTC 58 25319512 25321075 AAGGGATCCCACTTCTCTG 58 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000031929 ENSRNOT00000071356 3 1 1 60 8 40449619 40449641 CTTTGATCCTTTCCAACATCCTC 60 40449660 40449679 CTGAAGGCTTTCGATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap74 ENSRNOG00000023627 ENSRNOT00000068525 1 1 1 80 5 172827148 172827169 AATCCAGTTAGAGGATCTGGAG 59 172827210 172827366 TTGGCCAAACTGTTGTCAC 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595,ENSRNOT00000021858 1 2 2 80 1 177123274 177126546 CGACCACATCAGTATCCGA 59 177126587 177126608 ACATTCACATGGATTTCCACTC 59 NA Rattus norvegicus 81 Pcgf1 ENSRNOG00000008360 ENSRNOT00000011173 3 1 1 80 4 113911895 113911914 TCAATCTCAAACTGGATCGG 58 113911957 113912139 TCCGTTTCTCTTCACTGTC 57 NA Rattus norvegicus 81 Msrb1 ENSRNOG00000055314 ENSRNOT00000090552 1 1 1 80 10 14108461 14108482 ATTTACTGAAACCATCCACGAG 59 14108522 14108895 CCACAGGACACCTTTAAAGC 59 NA Rattus norvegicus 81 Zfp64 ENSRNOG00000012762 ENSRNOT00000017063 3 1 1 86 3 165739860 165739878 TGTCAGAAGAGACAGTGCC 59 165728315 165739811 GAGCTGCAACTGTGATAGTC 59 NA Rattus norvegicus 81 RGD1305350 ENSRNOG00000007968 ENSRNOT00000010558 3 1 1 84 5 164755753 164755775 TCCACCTCTTCCTCTTTAAACTC 60 164755819 164756986 CTGGGATCTTCCTTGCTCC 60 NA Rattus norvegicus 81 Gtpbp1 ENSRNOG00000014634 ENSRNOT00000049247 2 1 1 81 7 120938878 120938896 CTGGCACTCAATGTACCTG 58 120938940 120940571 GCTTCAGGGTTTCTTGAAGG 59 NA Rattus norvegicus 81 Exosc3 ENSRNOG00000012409 ENSRNOT00000016582 3 1 1 80 5 60868849 60870635 GACCAAATGTACAGGTTGGA 58 60868788 60868807 TACAGACCATTTCTGGTTCC 57 NA Rattus norvegicus 81 Rtkn ENSRNOG00000009022 ENSRNOT00000031964 3 1 1 80 4 114848462 114849102 TATCCTCATCAACAAGGAGAC 57 114849143 114849162 CTGATACTGAGGGTGAAAGG 57 NA Rattus norvegicus 81 Efr3a ENSRNOG00000025528 ENSRNOT00000045357 2 1 1 80 7 106597076 106597600 CGTGGCATCAGAATAATTCCAG 60 106597635 106597659 CATGAAGCTTGTATCTTGTCTACAG 60 NA Rattus norvegicus 81 Spire2 ENSRNOG00000016920 ENSRNOT00000022823 1 1 1 80 19 56160696 56161330 GAAAGGTCATGGTCGATGG 58 56161374 56161392 GTGAACGGATGAAGTCCAG 58 NA Rattus norvegicus 81 Eif5 ENSRNOG00000010218 ENSRNOT00000013695 2 1 1 80 6 136006746 136006766 CTCTGTATCCACCAGTGAGAC 60 136006807 136007096 TCTTCCTCTTCTTCCACAGC 60 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 3 1 1 64 7 114944358 114944377 GCACTATGGATATGGTCAGC 58 114944312 114944331 TGCTGAGGATGTGAATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Cnn2 ENSRNOG00000043044 ENSRNOT00000065093 1 1 1 85 7 12785642 12785660 GATAGAAGGACTCACGGGC 60 12785707 12786586 TGTTCATGAGTGTGCATAGGA 60 NA Rattus norvegicus 81 Cacna1s ENSRNOG00000046231 ENSRNOT00000074366 1 1 1 80 13 52911401 52911420 AACTTTGGCTTCTCTATGCT 57 52911462 52912577 ATCATTGACCCAGTACAGGA 58 NA Rattus norvegicus 81 Npy1r ENSRNOG00000014149 ENSRNOT00000018952,ENSRNOT00000079412 3 2 2 60 16 24780866 24780887 GAGACTATAGCCATGTCTACCA 59 24780827 24780846 TTGCCTGCTTCAAAGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl23 ENSRNOG00000000249 ENSRNOT00000000266 2 1 1 80 10 105792027 105792121 TGAACCAGAAGACTTTGAAAGC 60 105792158 105792180 GTAGACCAGAATTGAACTTTGGG 60 NA Rattus norvegicus 81 Opalin ENSRNOG00000022386 ENSRNOT00000030656 1 1 1 90 1 260326434 260328605 TATCCGAGAATCCTAGGCAG 58 260326363 260326382 CTTCCTGAGACAGTCTTCAC 58 NA Rattus norvegicus 81 Ccdc8 ENSRNOG00000027936 ENSRNOT00000029810 3 1 1 81 1 78935069 78935091 CTGCAGTTAATCCAAGAACAGAG 60 78935132 78935180 TTTGGACTAGCCTCTGCTC 59 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 2 1 1 69 10 14620592 14622774 GGCCTATACAATTTACTGCCA 58 14620543 14620561 AAACTTCTTCGCTTGTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 3 2 2 80 14 38018635 38019744 CTGGCTTCAGCTATGATAAGTG 59 38019785 38019803 CTCCAAAGAGTCCACTCCC 59 NA Rattus norvegicus 81 Hnrnpul1 ENSRNOG00000020683 ENSRNOT00000028100 1 1 1 80 1 82513933 82514396 ACCAGTATCAGCAGTATGCC 60 82513872 82513891 CGTAGTTCCCGTAGTAAGGT 59 NA Rattus norvegicus 81 P3h3 ENSRNOG00000016071 ENSRNOT00000021578 3 1 1 80 4 157372804 157372826 GCTAAGTATAGGAGAATGTCTGC 59 157372098 157372766 GTCATAAGCTGCCCAATACAG 59 NA Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 2 2 2 80 6 102013316 102013336 AACCAGCATAGATTCTGTACG 58 102013378 102014733 GTCTTCAAGGACTGTGCTC 58 NA Rattus norvegicus 81 AABR07034008.1 ENSRNOG00000001601 ENSRNOT00000002177 2 1 1 60 11 47793461 47793480 GGGCACTCAAAGAAATTTGG 58 47793503 47793521 ATGTACACATCCGGAGACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt10 ENSRNOG00000014296 ENSRNOT00000019406 1 1 1 80 7 130796371 130808820 TACATCTTCATCCCGCCAC 60 130796309 130796329 CCCATGCTAAAGTCAACACTG 60 NA Rattus norvegicus 81 Tubb1 ENSRNOG00000046151 ENSRNOT00000075148 2 1 1 89 3 172555900 172556597 AAGCCTACGGTAAGAAGTACG 60 172556648 172556666 TTCCCAATCTGCTGGATCG 60 NA Rattus norvegicus 81 Polrmt ENSRNOG00000024879 ENSRNOT00000039232 1 1 1 80 7 12850546 12850664 CCATGATGAACGAGGTATGC 59 12850707 12850725 CCAGGAACTTAGCCAGGTC 60 NA Rattus norvegicus 81 Lcn2 ENSRNOG00000013973 ENSRNOT00000018776 2 1 1 80 3 11415452 11415612 GAATATTCACAGCTACCCTCAG 59 11415393 11415412 AATACCATGGCAAACTGGTC 59 NA Rattus norvegicus 81 Nhlrc4 ENSRNOG00000039279 ENSRNOT00000060150 1 1 1 60 10 15306323 15306341 CACAGCTTTGGTCATCCAG 59 15306281 15306300 CAGCCACAATAATGCTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC118496.1 ENSRNOG00000054817 ENSRNOT00000087847 3 1 1 80 6 103452392 103452413 TGAAGAACTCTCACCTACTGC 60 103452455 103452473 GCCACTGAGGATTCTTCCT 59 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000083096,ENSRNOT00000012112 1 2 2 82 5 129163926 129163945 GCAAACCAAAGCTTAAAGCT 58 129158803 129163881 TTTCTCCACCTGTTGTGAC 58 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 2 2 2 81 13 52860361 52860380 CATGATGTGGAAGCCTACTG 59 52860422 52863397 TGACGATAATGACCTTGATGG 58 NA Rattus norvegicus 81 Pcdhb12 ENSRNOG00000033719 ENSRNOT00000043846 2 1 1 60 18 30511592 30511611 CACTGTACCTAGTCATTGCC 58 30511634 30511652 AGCACTACAGACAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fryl ENSRNOG00000002248 ENSRNOT00000003061 1 1 1 80 14 37755142 37755311 AAGCGTTTAGAACCCTCTG 58 37755352 37755373 AATAGATGTGTAGGAGTGTCTG 57 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 1 2 2 81 5 166915701 166923310 GAACGGACTTGATCCTGAG 58 166915638 166915656 CAGACGTTCCTTTCCTAGC 58 NA Rattus norvegicus 81 Dhrs7c ENSRNOG00000026548 ENSRNOT00000036752 3 1 1 80 10 54364666 54366350 ACTTTCACCAAAGTTCTGCT 58 54366391 54366411 CTTTGCTTGGATGTTGTTCAC 59 NA Rattus norvegicus 81 Mt3 ENSRNOG00000018958 ENSRNOT00000025669 3 1 1 110 19 11325821 11326027 GTCCTACTGGTGGTTCCTG 59 11324888 11324906 ACTTCTCACATCCTGCAGG 59 NA Rattus norvegicus 81 AABR07062181.1 ENSRNOG00000055455 ENSRNOT00000079951 2 1 1 80 4 163950408 163950427 GGATCAGATGTCAACAAGCC 59 163946773 163950366 GAAGGAACTTCAGCTCATCC 58 NA Rattus norvegicus 81 Prss54 ENSRNOG00000023092 ENSRNOT00000033953 1 1 1 80 19 9905883 9905902 AAGTCTACACAAACCGACAG 58 9905944 9906627 GTCATGTGATTTCCTGTTGC 58 NA Rattus norvegicus 81 Rn60_X_0768.3 ENSRNOG00000051760 ENSRNOT00000077359 1 1 1 60 X 76748634 76748653 CACATTAGTACCCAGACCCA 59 76748674 76748694 GCAATGGACTTAGTAGTACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049401.1 ENSRNOG00000037977 ENSRNOT00000057774 2 1 1 80 5 120741259 120741701 CATAAGGATCATTCCAGCAGG 59 120741199 120741220 ATTGCATACATCCCAGAAATCC 59 NA Rattus norvegicus 81 Olr1442 ENSRNOG00000031246 ENSRNOT00000042880 3 1 1 60 10 44528079 44528099 CATTCTGTTGTTACCCTTCCT 58 44528120 44528139 GAATACAACCAACACCCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 1 2 2 80 11 86839224 86839247 GAGTATATTCAGCCAATACTGAGC 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Mphosph10 ENSRNOG00000016266 ENSRNOT00000038511 3 1 1 84 1 125224527 125224547 GAAGATACGAGTTCCTTAGCT 57 125222817 125224483 TCTCATTCATCTTCTCCTGTC 57 NA Rattus norvegicus 81 Rtn4r ENSRNOG00000030920 ENSRNOT00000051037 3 1 1 60 11 86993158 86993176 GTGACTTAGAGGGTTGTGC 58 86993116 86993134 AGCTGATTGGTCTGGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6b ENSRNOG00000007523 ENSRNOT00000009944 2 1 1 80 10 70087127 70087641 TTTGAGTACACATTGGGCG 59 70087065 70087086 TTTGACCAACAAGGTAACAGAG 59 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000003734 ENSRNOT00000004958 3 1 1 81 X 134540231 134540249 GACTGGCCATCAGATTTGC 59 134540293 134541498 AAGCATCACCTTCTCCAGAG 60 NA Rattus norvegicus 81 Dxo ENSRNOG00000000422 ENSRNOT00000000483 1 1 1 80 20 4518841 4518859 GAACCCAGAAGGTTTCGTC 59 4518902 4519029 CCTTCTTGGTCATTCCTGAC 58 NA Rattus norvegicus 81 Pln ENSRNOG00000000413 ENSRNOT00000000469 3 1 1 160 20 34633206 34633224 TTGTGACGATCACAGAAGC 58 34640842 34640860 CGAGCGAGTAAGGTATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1309188 ENSRNOG00000009255 ENSRNOT00000012269 2 1 1 233 8 22626174 22626192 AAGTGGTACCACGACAGTG 60 22626468 22626486 GAACTTGATGCGTCAAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Asl ENSRNOG00000000903 ENSRNOT00000001211 1 1 1 80 12 30170869 30170890 AAGGCATCTTCAAATTGTACCC 59 30170928 30171161 CTTCACCAATGAGTTCCTTCAG 59 NA Rattus norvegicus 81 LOC100910275 ENSRNOG00000049965 ENSRNOT00000043210 1 1 1 80 6 138367159 138367510 AAGTGGCATTCAAAGGCTC 59 138367097 138367117 CGTTGTCATTCTCAGACATGG 59 NA Rattus norvegicus 81 Dctn5 ENSRNOG00000018048 ENSRNOT00000024367 1 1 1 81 1 192090511 192090529 AGAGTTGGACGTCACTGTG 60 192090573 192095133 AGAATGCAACACCTTTGCTG 60 NA Rattus norvegicus 81 Dctn5 ENSRNOG00000018048 ENSRNOT00000024367 2 1 1 82 1 192090511 192090529 AGAGTTGGACGTCACTGTG 60 192090574 192095134 AAGAATGCAACACCTTTGCT 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000067545,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 7 7 80 3 48257767 48258974 CCAGCATTCTGAAGTTTATCC 57 48259015 48259034 GAATTCCCTTCAGAGACGAG 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000067545,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 7 7 80 3 48220512 48220532 TCTACTGTGCATGTATGTCTC 57 48220573 48221144 CGATTGCACTTATACGACCT 58 NA Rattus norvegicus 81 Marcks ENSRNOG00000000579 ENSRNOT00000000707 3 1 1 132 20 42966507 42966525 GTTGAAGAAGCCAGCATGG 60 42966621 42968157 TTACGTGGCCATTCTCCTG 60 NA InUTR Rattus norvegicus 81 Cnot3 ENSRNOG00000053234 ENSRNOT00000088502 3 1 1 80 1 64139104 64140184 AAAGGCGATAAGGATAAGCAG 58 64139044 64139063 CAGCATACGTACATGGTAGC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000083674,ENSRNOT00000090706,ENSRNOT00000077110 1 4 4 80 17 34787706 34791412 CGGTTTGACTTCAGAGCAG 59 34791453 34791474 GCTATGTTTAGGAAGGTGTGAC 59 NA Rattus norvegicus 81 Khk ENSRNOG00000008047 ENSRNOT00000043572 2 1 1 81 6 26812426 26812444 GGTGTCCGTGGAGATAGAG 59 26811259 26812383 ATCTTTGCTGACAAACACCAC 60 NA Rattus norvegicus 81 RGD1309036 ENSRNOG00000037298 ENSRNOT00000056420 1 1 1 104 1 100347395 100348424 AGACTTCGGAGGATTTCACG 60 100347310 100347329 TATTCTCGTAGCGGATGCTG 60 NA Rattus norvegicus 81 Mkln1 ENSRNOG00000054514 ENSRNOT00000081707 3 1 1 80 4 58776772 58776794 GTGTAGATGACAGAGCCAG 57 58776840 58776858 CTCGAAGAAGTTTCCAGGT 57 NA Rattus norvegicus 81 Lrrc17 ENSRNOG00000012817 ENSRNOT00000017103 1 1 1 80 4 10120118 10120136 AAGCAGACTCCACTCTGTG 59 10113644 10120076 GGACTTTCTTCAGCTCTTTCC 59 NA Rattus norvegicus 81 Sectm1b ENSRNOG00000036673 ENSRNOT00000054932 2 1 1 91 10 110252810 110253056 TAATAAAGAGTGGGACGAACC 58 110252739 110252757 TGTTAGAGATGTTGCAGGC 58 NA Rattus norvegicus 81 Zdhhc19 ENSRNOG00000025055 ENSRNOT00000033026 2 1 1 80 11 71521495 71521842 TTCTTCGGATTTCCTTGTAGGT 60 71521436 71521455 GAGGATGAAGAGTGGTCCTG 60 NA Rattus norvegicus 81 Secisbp2 ENSRNOG00000013773 ENSRNOT00000041371 1 1 1 80 17 13576547 13576565 ACGGATCACACTGATGGAG 59 13573606 13576504 TGGTGTCCAAGACAACTCTC 60 NA Rattus norvegicus 81 Secisbp2 ENSRNOG00000013773 ENSRNOT00000041371 2 1 1 80 17 13561880 13561899 GATGACTCACAGGATGTGGA 59 13560387 13561838 TTCTGTCTTCTCTGGACCTG 59 NA Rattus norvegicus 81 LOC100364733 ENSRNOG00000037495 ENSRNOT00000056771 1 1 1 85 6 143590311 143590413 TGTCCCTGCATATGTCCTG 59 143590244 143590262 AAGTCAGACTGAGGGTGTG 59 NA Rattus norvegicus 81 Itpa ENSRNOG00000021233 ENSRNOT00000028838 3 1 1 81 3 123213142 123213161 TGTGCTTTAATGCACTTGGG 60 123215642 123216615 TGGTAGAGACCTTCAGGCT 60 NA Rattus norvegicus 81 RGD1565317 ENSRNOG00000023182 ENSRNOT00000017230 3 1 1 61 10 66509171 66509190 CCCAGATCAAAGCTCATGTG 59 66509213 66509232 GAGCACGACTTGATCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcsk6 ENSRNOG00000011526 ENSRNOT00000015845 2 1 1 80 1 126930804 126930822 TGGGTTCTATCACCACCAG 59 126930864 126932462 AGTCTCTGACTTTCATCAGCA 59 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000049090 ENSRNOT00000072189 2 1 1 116 2 200603652 200606168 CCACTGTCTGTTCAGAGGG 60 200606247 200606266 CAGATTCTGACAGTCCTGGG 60 NA Rattus norvegicus 81 Olr820 ENSRNOG00000046810 ENSRNOT00000047359 2 1 1 60 4 72656752 72656772 CTGTGCTTTGTTCTAGTCTCC 59 72656792 72656812 CTGACTGGATCTTTAGGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561662 ENSRNOG00000015297 ENSRNOT00000020516 3 1 1 92 9 15550643 15552393 AAAGAAGTGAGAGGTGCCA 59 15550569 15550587 GTCCAGATCATAGTGCACG 58 NA Rattus norvegicus 81 Zcchc11 ENSRNOG00000052062 ENSRNOT00000079161 3 1 1 81 5 128136279 128136300 TGCTTATATCCTTATGGTGCTG 58 128136340 128147095 TCCATCAAAGATCTCTTGCAG 58 NA Rattus norvegicus 81 Atn1 ENSRNOG00000060594 ENSRNOT00000088895 2 1 1 87 4 157268127 157268145 CACTGGAACAGCAACAGTG 59 157267926 157268078 TTCAGGTGACTGTAGTAGTCC 59 NA Rattus norvegicus 81 Odc1 ENSRNOG00000005424 ENSRNOT00000079185,ENSRNOT00000007259 1 2 2 80 6 42856138 42856156 GTGTACTGACCCTGAGACC 59 42856198 42856389 CTGAAACCAACTTCTGTTCCC 60 NA Rattus norvegicus 81 LOC100911100 ENSRNOG00000045867 ENSRNOT00000051470 1 1 1 60 5 137584102 137584121 CTTCCTTCACCATGAGTCTG 58 137584061 137584082 TCACAGAAGTAGTGGTCAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk12 ENSRNOG00000031233 ENSRNOT00000044376 3 1 1 80 7 130111929 130111949 AGGAGATCATGAAAGTCACAG 58 130111799 130111887 CCATGTAGTTCTTGGCCTC 58 NA Rattus norvegicus 81 Abl1 ENSRNOG00000047356 ENSRNOT00000042495 3 1 1 83 3 10054831 10060413 GAAGACCCTGAAGGAGGAC 59 10054766 10054785 AGGTTAGGGTGCTTGATCTC 59 NA Rattus norvegicus 81 Eef1d ENSRNOG00000021638 ENSRNOT00000029456 1 1 1 80 7 116929292 116929310 CAGTACGCAGAGAAGAAGG 58 116928691 116929251 ATCATCCCAAGGTTTAACATCC 59 NA Rattus norvegicus 81 Akap5 ENSRNOG00000006410 ENSRNOT00000008416 2 1 1 119 6 99356680 99356698 AGAATCTGATGCACTGAGC 58 99356781 99359500 TTTAAAGCCCAACCTGGAG 58 NA InUTR Rattus norvegicus 81 Kcnab3 ENSRNOG00000008480 ENSRNOT00000011523 3 1 1 80 10 55931479 55931499 CTCCAACTGGAATACGTTGAC 59 55931539 55931801 CATGGCTCTTACAATCTCCTC 58 NA Rattus norvegicus 81 RGD1563668 ENSRNOG00000038478 ENSRNOT00000058640 2 1 1 60 10 40994755 40994775 ATGCTTCTGTCAACTTCTCAG 58 40994715 40994734 GACATGGTCTTCCACCTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elavl4 ENSRNOG00000023601 ENSRNOT00000035252 1 1 1 80 5 130009235 130010722 TGATCAAGTCACAGGAGTCTC 59 130009175 130009194 CCTTTGATGGCTTCTTCTGC 60 NA Rattus norvegicus 81 Tmem191c ENSRNOG00000001864 ENSRNOT00000002546 2 1 1 114 11 87977020 87977038 ACATCCCGAGCTATTCGAG 59 87976845 87976942 GATTGTGTTGCTCCAGGTC 59 NA Rattus norvegicus 81 Olr894 ENSRNOG00000061448 ENSRNOT00000090661 1 1 1 60 7 5168547 5168565 CTGCCATGTCCTATGACTG 58 5168505 5168525 ATGATGGTTGTGTAGTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galt ENSRNOG00000014766 ENSRNOT00000019886 1 1 1 80 5 58146764 58146784 CTTTCCAGACATTACTGCTGC 60 58146826 58146945 AGGCTAGATCATCACGCTC 59 NA Rattus norvegicus 81 Galt ENSRNOG00000014766 ENSRNOT00000019886 3 1 1 80 5 58146408 58146428 CAGCAGACTTATCACAACCAG 59 58146470 58146711 CAGACGTTCCTTCCTGAGG 60 NA Rattus norvegicus 81 Olr1413 ENSRNOG00000026801 ENSRNOT00000031811 3 1 1 60 10 43895150 43895171 TTCTGGACATCTTCTTTACCTC 58 43895111 43895129 CCAAAGAGAAAGCCTACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1435 ENSRNOG00000029289 ENSRNOT00000050288 1 1 1 60 10 44348211 44348230 AAGACACGTCCCAATATGAG 57 44348170 44348190 GGTAACAACAGAATGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir327 ENSRNOG00000059368 ENSRNOT00000084355 1 1 1 60 20 14110694 14110712 GAGGGTAGTCAGTAGCCTG 59 14110652 14110670 CAAGCCATTCCAACATGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyb5d1 ENSRNOG00000045742 ENSRNOT00000074505 2 1 1 81 10 55997031 55997050 CCTACTGTTGAAACCCATCC 58 55996842 55996987 CTTGCGAATGTCTTTGGTC 57 NA Rattus norvegicus 81 Kntc1 ENSRNOG00000033658 ENSRNOT00000063990 1 1 1 80 12 38261788 38261807 CCTTCTCTTCCCATAGAGCA 59 38259013 38261746 AGAGTCTTCACATAGGCAGG 59 NA Rattus norvegicus 81 Fam46c ENSRNOG00000015222 ENSRNOT00000020401 3 1 1 85 2 202816335 202816353 GTCACCTCTTCTTCCAACG 58 202799926 202799944 CTCGGAGTCCTTGGTACTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Khdrbs1 ENSRNOG00000046794 ENSRNOT00000075270 2 1 1 80 5 147952680 147952699 AACTCATGGCTGAGAAGGAC 60 147941479 147952643 GAATCTTCTCAATTTCTACGGACAG 60 NA Rattus norvegicus 81 AC126957.1 ENSRNOG00000042397 ENSRNOT00000064835 1 1 1 80 1 230704199 230704224 TCCCTCTCCTTCTGTAATAACC 59 230704265 230704283 TGTGTTACTACAGGCCAGC 60 NA Rattus norvegicus 81 Ankrd2 ENSRNOG00000013840 ENSRNOT00000018890 3 1 1 81 1 261286522 261288167 AGACACCTGTGATGAGTTCC 60 261288207 261288229 CAGAAGTTTCTCCAGTATCTCCA 60 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 2 2 2 81 7 144058465 144058483 AGTTCCTTGAGGATGGCTC 59 144058528 144058662 GTTTGTACTGGCCATCCTG 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084274 3 1 5 89 14 71542351 71542369 TGCTGGGATTATTGACCCT 58 71542422 71567743 TAGACAAGCAAGCCTTGAG 58 NA Rattus norvegicus 81 Rpp25l ENSRNOG00000059653 ENSRNOT00000082496 2 1 1 60 5 58096487 58096505 CCAGTGAATGTGGCTACCA 60 58096445 58096464 GAACTAGGTATGGAGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062219.1 ENSRNOG00000057069 ENSRNOT00000088908 3 1 1 80 4 165356828 165356846 GATGTAAACGGATCTGCCA 58 165353385 165356784 GTTGCTGAAGGAACTTCCT 58 NA Rattus norvegicus 81 Slco4c1 ENSRNOG00000022711 ENSRNOT00000033958 3 1 1 81 9 104305334 104306740 TTCTTCGGTTGTTAGGCAC 58 104305271 104305289 TTGATGTCCCACAGAACAC 58 NA Rattus norvegicus 81 AABR07034730.2 ENSRNOG00000050898 ENSRNOT00000036565 2 1 1 80 11 85532563 85532703 ACTTAACAGGGTCATGTGC 58 85532747 85532765 ACAGTTTGACTGTGCTTCC 58 NA Rattus norvegicus 81 Best1 ENSRNOG00000020346 ENSRNOT00000007320 3 1 1 80 1 226040545 226040926 GAGCCTGATGAATGAGGTG 58 226040483 226040503 ACCAATGGGATATTGATCCAG 58 NA Rattus norvegicus 81 Zcchc6 ENSRNOG00000016629 ENSRNOT00000022373 1 1 1 80 17 5238944 5238964 GCTTCATTGATGTTGATGCTG 59 5239005 5239829 TACAAAGAAGGCCACTTTGC 59 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000061506 ENSRNOT00000084195 1 1 1 60 10 60997568 60997586 TCATTCTGCTGGGATTGGT 59 60997607 60997628 AGGAAGAGTATGAAGACAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc40 ENSRNOG00000011555 ENSRNOT00000015434 2 1 1 80 2 264885553 264888152 TTCCACAAAGGATTGCTGAG 59 264888194 264888213 CATGGGACACAAGAGAAAGC 59 NA Rattus norvegicus 81 RGD1561853 ENSRNOG00000050286 ENSRNOT00000070883 3 1 1 60 11 2813581 2813599 CTGAAGCAACAGAACCTCC 59 2813539 2813560 ACTGCTACACTTGTAGAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686,ENSRNOT00000050620 2 2 2 80 7 129989722 129989740 GGAAGTCACAAGAACGACC 59 129989779 129992218 CCTTTATTCTCTATCCAGATCACG 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724,ENSRNOT00000067420 2 2 2 80 8 53350270 53350291 CTATAGTCTGTTCCGAAAGGTG 58 53350330 53350841 AAAGCTTCCTGGTACTTTCCT 59 NA Rattus norvegicus 81 Armc10 ENSRNOG00000012785 ENSRNOT00000044020 1 1 1 80 4 10019789 10019807 GTATCTACCGGCTGACTCG 60 10016291 10019745 CCTCCGTTAGGTCTTCTGC 60 NA Rattus norvegicus 81 Hbe2 ENSRNOG00000030784 ENSRNOT00000048484 2 1 1 80 1 169001713 169001734 GCTGCTATCATAAGCATATGGG 59 169001323 169001675 ATATACAATGAGGAGCCTTCCC 60 NA Rattus norvegicus 81 Shc3 ENSRNOG00000014366 ENSRNOT00000019442 1 1 1 80 17 13670982 13719250 TATGTGGTCAAGTACTTGGGA 59 13719289 13719310 GGTAACCTGAGTTCTTGTACTG 59 NA Rattus norvegicus 81 Shc3 ENSRNOG00000014366 ENSRNOT00000019442 3 1 1 81 17 13670981 13719249 CTATGTGGTCAAGTACTTGGG 58 13719289 13719310 GGTAACCTGAGTTCTTGTACTG 59 NA Rattus norvegicus 81 Dnah11 ENSRNOG00000005451 ENSRNOT00000007233 3 1 1 80 6 145975137 145975987 CTCAGCTAAAGTTGTCAGCC 59 145975076 145975094 CAGTGCTTCCTCGATTCCT 60 NA Rattus norvegicus 81 B3gnt5 ENSRNOG00000046258 ENSRNOT00000071848 1 1 1 80 11 84930938 84931094 GTTTGTTGTACTCGGCTCC 59 84930876 84930894 CACAGCCAATCTTAAGGGC 59 NA InUTR Rattus norvegicus 81 Hyal3 ENSRNOG00000016093 ENSRNOT00000021590 3 1 1 80 8 116341751 116341874 GTTTCTAGCTCTGAGGAAGAG 58 116341915 116341934 GGTCACGTTGATCACATAGG 59 NA Rattus norvegicus 81 Rabl2a ENSRNOG00000013947 ENSRNOT00000044262 2 1 1 80 7 130557146 130557164 GCTATTCGGTTAGCTGTGG 58 130556924 130557104 CTTGAAGTTCTCAAGCTCCTG 59 NA Rattus norvegicus 81 Efnb3 ENSRNOG00000010320 ENSRNOT00000013955 2 1 1 114 10 56164784 56166938 AATAAGAGGTTCCAGGCAGAG 60 56164690 56164710 CATAACTAGGAGAGGAGTGGG 59 NA Rattus norvegicus 81 Naa15 ENSRNOG00000012385 ENSRNOT00000017379 2 1 1 80 2 140507191 140507210 GAATTTCAGCAAGGGTTGTC 58 140507252 140509954 TCTACAATTGCCACCTTCTC 58 NA Rattus norvegicus 81 Bub1 ENSRNOG00000032778 ENSRNOT00000051783 1 1 1 80 3 120397763 120399549 ACAACAATACAGGCTATTCCAG 59 120396517 120396536 CTATGCAAAGGTTCTGAGGT 58 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 1 2 2 60 10 103409100 103409119 TATGGATGAACCAGCCTCAG 59 103411696 103411714 CTGACCATTGTAGCCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Fancc ENSRNOG00000016889 ENSRNOT00000022884 1 1 1 80 17 870215 881552 GAACACTCAAAGTCGGATGG 59 870154 870176 ATATCAGGCAGAGTAACAAGAGG 60 NA Rattus norvegicus 81 AABR07052130.1 ENSRNOG00000008501 ENSRNOT00000011239 3 1 1 97 3 38280642 38280660 AAAGGCCTGAAGAAGATGC 58 38280912 38280930 TTAGGCTTGATGGCCTGAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100362150 ENSRNOG00000046854 ENSRNOT00000048400 3 1 1 60 4 102794193 102794211 TTCTTGGGTTCTTGTTGCT 58 102794345 102794364 GACTGGGTCATCTGAATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Pafah1b1 ENSRNOG00000002755 ENSRNOT00000003696 3 1 1 80 10 61468066 61476864 GGATGCTACAATTAAGGTGTG 57 61468006 61468026 TCCTGTACAGAATCTGTATGC 57 NA Rattus norvegicus 81 Tas2r139 ENSRNOG00000028135 ENSRNOT00000037220 1 1 1 60 4 71512854 71512877 ACTACTAGGATTCTGCTTCTTCTG 60 71512895 71512914 TCAAGATGATGCTTTGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000077153,ENSRNOT00000004881 3 2 2 128 13 60591798 60593953 CCAATTGATTTAGGTGCATGC 59 60595516 60595535 TCTGTCAGATACAATGGCCA 59 NA Rattus norvegicus 81 Aire ENSRNOG00000001213 ENSRNOT00000001611 1 1 1 80 20 11369492 11369511 ATTTGAAGAACAAGACCCGA 58 11369554 11369765 TCTGCTCATCTCTACCCTG 58 NA Rattus norvegicus 81 Sap18 ENSRNOG00000020771 ENSRNOT00000028179 2 1 1 60 10 89635921 89635940 GCAACCTTGAAAGAACTGAC 58 89635963 89635981 CCTTCTTTCTGGCTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atrnl1 ENSRNOG00000017406 ENSRNOT00000023414 1 1 1 80 1 278620815 278629809 TGACATAGCTTGTGATGAATGG 59 278629849 278629868 ACTGCAGAATGTCCAAATCG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000029443 ENSRNOT00000050726 3 1 1 60 7 76980128 76980146 TGATCCGTAAATACGGGCT 59 76980170 76980188 ATGTCCTTCGCGTACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000085581 2 1 2 140 17 13802503 13802701 GACTGTTGAGCTTCATCGTC 59 13802382 13802400 TGACCTTGTAGGCTATGCC 59 NA Rattus norvegicus 81 Lrrc10 ENSRNOG00000049607 ENSRNOT00000073117 2 1 1 60 7 60087480 60087498 CAGAGTTATGTGGTGGGAG 57 60087522 60087540 CACTCAGATCCACCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp1a1 ENSRNOG00000030019 ENSRNOT00000040430 3 1 1 80 2 204011880 204011899 CTCCATGATTGACCCTCCTC 60 204010903 204011839 ACCATGATGACCTTAATCCCA 59 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040,ENSRNOT00000017195 2 2 2 80 13 56873761 56873780 ATAATCAGAGCACCATCACC 58 56865737 56873718 ATTTCCCTGCTGAATTGGG 58 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 1 2 2 80 4 165626294 165626315 CAACGTCAGAAATGGATATGGA 59 165622656 165625295 TTCTTGATGGCAGTCTGGT 59 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469,ENSRNOT00000084521 1 2 2 80 2 120281286 120281307 CTCATTTCAACTTCGTAAGGAG 57 120281102 120281246 CTTCTGAGTCTTCCACACTG 58 NA Rattus norvegicus 81 Tigd5 ENSRNOG00000008686 ENSRNOT00000056527 2 1 1 60 7 116944166 116944184 CTACAGTCCAGATGCCTGG 60 116944207 116944226 GAATTCCTCGAAGAACCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enpp1 ENSRNOG00000013994 ENSRNOT00000019519 2 1 1 80 1 21804401 21804422 TAGTCCCATGCATAAATGTTCC 59 21804463 21805662 CTGTTTAGTCTTGGCGGTG 59 NA Rattus norvegicus 81 Bloc1s5 ENSRNOG00000016497 ENSRNOT00000022108 2 1 1 80 17 26808502 26812362 CACCTCATTATCAAGGATCTTGG 59 26812401 26812420 GTAACGGATTTCACCTTGGG 59 NA Rattus norvegicus 81 LOC100911456 ENSRNOG00000047911 ENSRNOT00000075212 1 1 1 80 5 164550197 164550330 GTACAAGTCAGGGTGAGCA 59 164550135 164550155 ATCAAAGCTCTTCCTTCTGTG 58 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 3 1 2 75 6 139637184 139637312 AAAGGTGTCCAGTGTGAGG 60 139637127 139637145 AGAGTTTCAGGGACCTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Phc2 ENSRNOG00000006004 ENSRNOT00000067912 3 1 1 80 5 146924084 146924579 ACCTGCAAGAATCCAAAGAG 58 146924622 146924640 ACTTGTAGGCAAAGTCCAC 58 NA Rattus norvegicus 81 LOC100909494 ENSRNOG00000012973 ENSRNOT00000066242 3 1 1 80 10 87708418 87708437 TTCTAGCTGTTGTGGATCCA 59 87708479 87708555 CTAGATCCACAGCAGGAAGG 60 NA Rattus norvegicus 81 Rbm34 ENSRNOG00000020004 ENSRNOT00000027145 2 1 1 80 19 59886013 59888499 GATTTCGTTCTGTGATGCCA 59 59880308 59880329 TCTGGTCAGGATGAAATTTACG 59 NA Rattus norvegicus 81 Pcdh15 ENSRNOG00000000606 ENSRNOT00000067633 2 1 1 80 20 15275769 15279487 AAGACATAGAAGACGTGCC 57 15271663 15271682 CCGAGGTGTAATCATTCAGG 58 NA Rattus norvegicus 81 Cd101 ENSRNOG00000037190 ENSRNOT00000056140,ENSRNOT00000077898 3 2 2 80 2 203403900 203413024 CTCTGTCTAACTAAGCTCAGCA 60 203403841 203403859 AGGGTAACCTTCGGTTCTG 59 NA Rattus norvegicus 81 Cntrl ENSRNOG00000022015 ENSRNOT00000007776 1 1 1 80 3 14361061 14362207 AGCTGCAAGATAAACGGGA 59 14362249 14362269 GCTTTGCTAGGTTCAAATGGT 60 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312,ENSRNOT00000032273 2 2 2 116 14 44905068 44905088 CCATGAAGATCACTTGGTACG 59 44905165 44908618 AGTTATGACTCTGCCGTCTC 59 NA Rattus norvegicus 81 Olr1346 ENSRNOG00000046219 ENSRNOT00000047487 2 1 1 60 9 99721645 99721663 GTCATGTATGCTCAGCCAG 58 99721687 99721705 AGACAGAGACCACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl39 ENSRNOG00000050393 ENSRNOT00000051137 3 1 1 60 7 36290253 36290272 CAGAATCAAGCGATTCCTGG 59 36290293 36290313 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sike1 ENSRNOG00000017502 ENSRNOT00000024270 2 1 1 83 2 205488424 205488629 CGGAGCAGTATCAAGAGGA 59 205488673 205488694 GAGTATTCTCTTGAGACAGCAG 58 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724,ENSRNOT00000078117 1 2 2 80 8 13247950 13247968 GACTTCGTCGATTTGGGTG 59 13245197 13247907 AGGTATTCCGCTAGAACCTG 59 NA Rattus norvegicus 81 Eqtn ENSRNOG00000026323 ENSRNOT00000029441 2 1 1 80 5 113880426 113880448 AGATAATGGAGGTGATACTCCTG 59 113879311 113880389 GGTGTAGTGAACACATATTGCT 59 NA Rattus norvegicus 81 Ros1 ENSRNOG00000000406 ENSRNOT00000080444,ENSRNOT00000000459 3 2 2 80 20 33144674 33144791 CAACAATATGTGCTGAAGATCC 58 33144615 33144633 CATGTTGACACTGACAGGA 57 NA Rattus norvegicus 81 RGD1564420 ENSRNOG00000009739 ENSRNOT00000013315 2 1 1 80 7 99666050 99666831 GAAACAACTTCTATGTGAAGCC 58 99665991 99666013 CTGACTTCTCCTTCAATCTTCTG 59 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 2 2 2 80 7 144316260 144316281 GGAGTTAGAGGATGACATCCAG 60 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079628 2 1 18 88 1 43508754 43697823 CGAACTAACCACCAGACCT 59 43697875 43697893 CTCCACAATGGAAGTGCTC 59 NA InUTR Rattus norvegicus 81 Trappc6b ENSRNOG00000004103 ENSRNOT00000005568 1 1 1 80 6 80143517 80143535 GGTGGCTTGTCAAACTTGG 60 80142651 80143474 CATCACCTGGAATTTGCAGG 60 NA Rattus norvegicus 81 Mir145 ENSRNOG00000035474 ENSRNOT00000053597 1 1 1 60 18 56969954 56969972 TTTCCCAGGAATCCCTTGG 59 56969912 56969933 TGACCTCAAGAACAGTATTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc9c ENSRNOG00000019464 ENSRNOT00000026376 1 1 1 80 1 225006354 225010556 CAATAGGCAACCTAAAGACGC 60 225006294 225006314 TCTTTCCTATGGTAGCTGCTG 60 NA Rattus norvegicus 81 Klhl3 ENSRNOG00000019533 ENSRNOT00000034877 1 1 1 80 17 6993049 6993067 AGCTTAAGTCTGGACCAGG 59 6993107 7014400 GGCTTCAAATACCTTCTCTTCTG 60 NA Rattus norvegicus 81 Olr1058 ENSRNOG00000050142 ENSRNOT00000041157 1 1 1 60 7 16394434 16394455 ATTCCTGCTTCTTACCTATCTG 58 16394476 16394494 GGTGAGTGTGATGATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362333 ENSRNOG00000004843 ENSRNOT00000006416 2 1 1 60 7 118816440 118816458 CAGTGATGTACTGTCAGCC 58 118816398 118816417 TTTCAATGGCGTTACGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nsun4 ENSRNOG00000046192 ENSRNOT00000016013 2 1 1 80 5 134895270 134895289 GACATTGTGCTTGACCTGTG 60 134892889 134895227 AGCTAGGTTACGGCAACAG 60 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000025660,ENSRNOT00000091113 3 2 2 91 9 17108220 17108317 GAACTCAATGAGCGGTACC 58 17108372 17108390 TCAGCAAACTTGTGGTTCC 59 NA Rattus norvegicus 81 Barx1 ENSRNOG00000016915 ENSRNOT00000022830 3 1 1 86 17 14826005 14826023 GTATTCACTGAGCTGCAGC 59 14825834 14825958 AGCTAGATCTATTCTGTCTGGG 59 NA Rattus norvegicus 81 Eno4 ENSRNOG00000018310 ENSRNOT00000065289 2 1 1 80 1 280106891 280106910 TCAGTTCATCACAGAGGAGC 60 280106951 280111169 TCAAAGAAGATCCTGAGCCTG 60 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 1 2 2 80 4 168616029 168616048 AGTACTTGGAGGAGTTGGTG 59 168616090 168618070 ACCACTGCTTGTACATTTCC 59 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 3 2 2 80 4 168616028 168616047 CAGTACTTGGAGGAGTTGGT 59 168616089 168618069 CCACTGCTTGTACATTTCCA 59 NA Rattus norvegicus 81 Yipf3 ENSRNOG00000018998 ENSRNOT00000025769 1 1 1 80 9 17119554 17119712 GGTAGCAGATCAGATGTGG 57 17119492 17119511 CTCAGGATGTCGATATTGGC 58 NA Rattus norvegicus 81 LOC100911305 ENSRNOG00000048668 ENSRNOT00000070844 1 1 1 60 9 61824907 61824929 CTTTCAGATCTATAAGGCTCTGG 58 61824949 61824967 GAAGCCATTAGTTTGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 1 2 2 80 X 15451691 15451884 GTTTGACCCTTCTTGTGGAC 59 15451926 15451945 TTGGGATCATGTGGTGAGAG 60 NA Rattus norvegicus 81 Ckb ENSRNOG00000010872 ENSRNOT00000015122 2 1 1 81 6 136143764 136143784 GGTTATCTCCATGCAGAAAGG 59 136143593 136143724 GAGAGTTTCAATCTGAGTGAGG 59 NA Rattus norvegicus 81 Ckb ENSRNOG00000010872 ENSRNOT00000015122 3 1 1 90 6 136144476 136144494 TTCCTCTTCGACAAGCCTG 60 136143828 136144422 TGTCATTGTGCCAAATGCC 60 NA Rattus norvegicus 81 Neurl4 ENSRNOG00000016109 ENSRNOT00000021883 3 1 1 80 10 56521419 56521437 GGTAGCTGTACCAGATGTG 57 56521481 56521610 CTCACAATTGTCACCTGCT 58 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 3 2 2 80 13 55498854 55498878 CTCTGTGTAAGAAGATAGAACAGTG 59 55488680 55498817 TAACTAACTGTCGGAGCTCC 59 NA Rattus norvegicus 81 AABR07062183.2 ENSRNOG00000054265 ENSRNOT00000078121 2 1 1 80 4 164011498 164011517 GGATCAGATGTCAACAAGCC 59 164007791 164011456 GAAGGAACTTCAGCTCATCC 58 NA Rattus norvegicus 81 Hbegf ENSRNOG00000018646 ENSRNOT00000025157 3 1 1 99 18 29332325 29332344 CACATATGACCACACTACCG 58 29331539 29332265 CCTATGGTACCTGAACATGAG 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 2 2 2 90 9 16959236 16962134 AAGCAGAAGGTTATTGAGGAG 58 16959166 16959184 GCTCCAACTCAGTTCTGAG 58 NA Rattus norvegicus 81 Zfp352 ENSRNOG00000033600 ENSRNOT00000049470 1 1 1 60 5 110325883 110325902 ACTCTCAGAAACCAACCTCC 59 110325842 110325862 GATGTTGTTCTCTTAGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461 2 3 4 89 4 165176291 165176312 TCCAGACAATTACTGGATTGGA 59 165169862 165176244 TTTGAGGCAAGTTTAGATGGTC 59 NA Rattus norvegicus 81 Mtcl1 ENSRNOG00000025527 ENSRNOT00000050012 1 1 1 80 9 114606358 114606376 GCACATGATCGAAGTGGAG 59 114550936 114606317 CTTCTCTTCAGAGAACTCTCCC 60 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 3 2 2 80 17 9625118 9626020 CTTCAAGAGGTTCTGTTTGGA 58 9626062 9626080 TTCTTGAGGCTGAAGTTGG 58 NA Rattus norvegicus 81 LOC100911093 ENSRNOG00000006432 ENSRNOT00000008526 2 1 1 80 4 138865662 138865823 GTTATAGATTCTAGGGAACCGGA 59 138865862 138865881 CTTGAGAAGAGCATGCTCTC 59 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 1 1 1 83 14 43830756 43831585 AAACAGGCAGCATAAGAGG 58 43831632 43831650 AATACCCTCCCAGGTAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Myg1 ENSRNOG00000013343 ENSRNOT00000017942 2 1 1 80 7 143936165 143936293 AGATTCAAGGTAGACTCAAGTG 58 143936334 143936352 TAGGTGGTACAGATGCTCC 58 NA Rattus norvegicus 81 Mtx3 ENSRNOG00000023837 ENSRNOT00000061761 3 1 1 80 2 22430056 22430076 ATAGGATTCTCTTGACGAGGG 59 22430115 22430233 CCTTGGCATCTCTGTATATCTG 58 NA Rattus norvegicus 81 Bnip1 ENSRNOG00000020753 ENSRNOT00000028173 3 1 1 80 10 16689269 16689288 ACGTCCGAATCTGTAACCAG 60 16686139 16689229 CGGAACAATCTCGAATATCCTG 59 NA Rattus norvegicus 81 Ly6g6f ENSRNOG00000027225 ENSRNOT00000037613 1 1 1 80 20 5074455 5074475 ACTGGTGTACTGTTATGGACC 60 5074305 5074413 ACTGGGATCCTTTGAGCAC 60 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366,ENSRNOT00000091316 3 2 2 80 9 114998836 115079524 GGTCATGAAGAAGAGGAAACTG 59 114998777 114998797 TTCACCATCACTGTCATCTCC 60 NA Rattus norvegicus 81 Egfem1 ENSRNOG00000023908 ENSRNOT00000039603 2 1 1 80 2 117109567 117109588 ACTACTTAGGAGGCTATGAGTG 59 117109629 117116046 CGTCTAAAGCGTCACATCC 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327,ENSRNOT00000038172 2 2 2 80 7 114305359 114305379 ACAAGATCCCTCTTCTCTGTG 59 114299774 114305321 GCTTCTTATAGTGTCTGCTATCC 59 NA Rattus norvegicus 81 Mpg ENSRNOG00000020571 ENSRNOT00000027940,ENSRNOT00000085746 1 2 2 154 10 15664609 15666634 CATTTCTGGGACAGGTCCT 59 15664473 15664491 TTTCATGAACATGCCACGG 59 NA Rattus norvegicus 81 LOC681356 ENSRNOG00000050666 ENSRNOT00000041763 1 1 1 60 18 40088022 40088040 AGCTCAATAAAGCCGTCTG 58 40088064 40088082 CGTACTCGGATTCGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC364561 ENSRNOG00000020474 ENSRNOT00000027818 1 1 1 80 8 21672797 21679159 GCTGATCAATGGCTACATCC 59 21679202 21679220 CTGCAGTCACTGAACTGTG 59 NA Rattus norvegicus 81 Stxbp6 ENSRNOG00000004198 ENSRNOT00000005618 1 1 1 80 6 65130322 65130341 CATCATTCGTCCGAAGATCC 59 65129452 65130279 CTGCAGAATCCCGATTAGG 58 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 1 2 2 127 5 64673615 64673633 GTCAGAATTCCACCCAAGG 58 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Dhx9 ENSRNOG00000002735 ENSRNOT00000064860 1 1 1 80 13 70887839 70887857 GCTAAACACCATCCGTCAG 59 70886498 70887795 CCATCGCCATACCTTACAC 58 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000081883,ENSRNOT00000068077 1 2 2 80 6 71106946 71119216 GCCTCTACTGTCTCCTGTG 59 71089783 71089802 TTTGACCTCTTCTCACGACC 60 NA Rattus norvegicus 81 AABR07008293.2 ENSRNOG00000048493 ENSRNOT00000072691 3 1 1 60 2 52152987 52153005 ACATGGAAACAACCCTGGA 59 52153026 52153047 CTTGTATCTACAGCTCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065645.1 ENSRNOG00000046011 ENSRNOT00000075284 3 1 2 111 6 138550443 138550545 TGACATTTCCAAGCTGTGC 59 138550350 138550368 AGTGAGAAGCCAGAGACAG 59 NA Rattus norvegicus 81 Lrrc8b ENSRNOG00000002129 ENSRNOT00000002897 2 1 1 80 14 5423404 5423422 ATCTGACCTTCATTCCCGA 58 5419203 5423362 GCATCTCGATGTTATTGTTGG 58 NA Rattus norvegicus 81 RGD1565498 ENSRNOG00000028782 ENSRNOT00000043581 3 1 1 81 7 63928369 63928389 CCCAGAAGTTCATCAACACTG 59 63928431 63933670 GGGTGGTGAAATCTAGAGCT 59 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163,ENSRNOT00000083811 3 5 6 80 9 17347357 17348154 CACTATGCAGATCATGCGG 59 17348198 17348216 TCACATCTGCTATGCTGCA 60 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985,ENSRNOT00000086244 1 2 2 80 12 37733325 37734527 ATAGAAGTGAGTGACTTGAGAG 57 37734566 37734586 CATCTCTTCAATTCGTTCCTG 57 NA Rattus norvegicus 81 Tbx4 ENSRNOG00000003544 ENSRNOT00000004736 1 1 1 80 10 73345534 73345556 GACCAAGTACATACTACTCATCG 58 73345595 73346676 GCAACCATCCATTTGTTGTC 58 NA Rattus norvegicus 81 Chd3 ENSRNOG00000009722 ENSRNOT00000057058 2 1 1 80 10 55953023 55953487 GGAGGAAGACAAGATTGAGG 58 55952962 55952980 AGCTTCTCCCAGTAGTCAG 58 NA Rattus norvegicus 81 Ddx28 ENSRNOG00000019817 ENSRNOT00000026817 2 1 1 60 19 37989694 37989712 CTTCCCGAGAATTAGCCGA 59 37989652 37989672 TCCAAGTACCTACCCAATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r1a ENSRNOG00000036827 ENSRNOT00000055271 2 1 1 92 7 145149452 145149843 CTTCTCAAGTCCACACTGTC 58 145148827 145148845 TTCAACCATTGTCTGGAGC 58 NA Rattus norvegicus 81 Skil ENSRNOG00000009899 ENSRNOT00000013191 3 1 1 80 2 115868562 115868582 GAGAACCTATGTGAGACAGCA 60 115868146 115868521 AGCATCTCCACTTCCATCTG 60 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 2 2 2 81 4 99976012 99979933 ATCCTCAAGTGCATGTTGG 58 99979977 99979996 TGTCACATTCTTCAGCAGTG 59 NA Rattus norvegicus 81 Olr1223 ENSRNOG00000051138 ENSRNOT00000076963 3 1 1 60 8 41303388 41303406 TCTTCTATGGATCTGGGCT 57 41303430 41303448 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062859.1 ENSRNOG00000031564 ENSRNOT00000052280 3 1 1 60 6 11859680 11859698 GATGTTGGTGTCATCCCAC 59 11859638 11859658 TCTTCTGTCGTCCTTTCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683,ENSRNOT00000065058 1 2 2 80 9 100934985 100940338 CCAGAGAACAGAAGATAAGAAAGC 60 100940376 100940395 GCTGACGAAAGAGTCTTCAC 59 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714,ENSRNOT00000064858 1 2 2 80 5 62225984 62230280 GCATCTGAAGGATGACATGG 59 62225923 62225941 CAGATCTTGGTGACCTGGT 59 NA Rattus norvegicus 81 Edem3 ENSRNOG00000028358 ENSRNOT00000017858 2 1 1 80 13 69160755 69162290 GCTACAGTATTCGAGGAATATGC 59 69162327 69162348 GCCTACTAAATTGCTACTTCGC 60 NA Rattus norvegicus 81 Trmt6 ENSRNOG00000021270 ENSRNOT00000028893 3 1 1 80 3 125466643 125466661 CGGGTCAACGTTTGAAGTG 60 125465618 125466600 TCTTTGGTCTCTGATGTGGG 60 NA Rattus norvegicus 81 MGC94207 ENSRNOG00000045765 ENSRNOT00000021775 2 1 1 80 7 117788389 117788407 CTATGTGGATCACCAAGGC 58 117787725 117787915 AATTGCAGGTCTTTGAAGCA 59 NA Rattus norvegicus 81 Olr1560 ENSRNOG00000050365 ENSRNOT00000075812 1 1 1 60 11 43711452 43711472 ATATTCTACACCTGCCTTCTC 57 43711489 43711512 GTATGTCTTTACTACCATCTTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1560 ENSRNOG00000050365 ENSRNOT00000075812 3 1 1 60 11 43711450 43711472 CAATATTCTACACCTGCCTTCTC 59 43711489 43711510 ATGTCTTTACTACCATCTTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scly ENSRNOG00000020083 ENSRNOT00000027220 3 1 1 80 9 98454960 98454980 GAGAACTGCGAGACTTATGAG 58 98455020 98455488 CTTACCAAATTCAGCCTCCAG 59 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506,ENSRNOT00000039993 2 2 2 80 14 820293 821485 ATGAGACAGCAGATATGGAGC 60 821527 821545 TTTGGAGGCAGTAGGTCTG 59 NA Rattus norvegicus 81 Slc7a11 ENSRNOG00000010210 ENSRNOT00000014317 2 1 1 80 2 139466942 139468260 CATCGTCCTTTCAAGGTGC 59 139466880 139466899 GTAAAGGGAGAGGACAACCA 59 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366,ENSRNOT00000083587 3 2 2 80 1 116658111 116658129 CCCATGGTTGTGTACAGGA 59 116658168 116658799 CTGATATAAGATTGGGTGAGAGTC 58 NA Rattus norvegicus 81 Supt3h ENSRNOG00000020153 ENSRNOT00000027293 3 1 1 60 9 18334671 18334689 CGAACTATGGATTCGGCTC 58 18331278 18334648 TGGAGAAACTTAACTGTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 2 3 3 80 11 20567349 20570172 AAGATGATACTTGAGATTGCCC 58 20570213 20570231 CGTGCCTATACGGTTAGTC 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 3 3 3 80 11 20495267 20501671 CATCTCTTGGTTCAGGAATGG 59 20501711 20501731 ACCGTGAGCTCTGTATTACTG 60 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000039868 2 1 2 81 8 4548913 4548932 TTTGCTCAGGATCTCAACAG 58 4548850 4548869 GTTCCTTCAACAGGGACAG 58 NA Rattus norvegicus 81 Dlk2 ENSRNOG00000018949 ENSRNOT00000025638 1 1 1 89 9 17062798 17063352 TGACAAAGATGAGCACATCTG 59 17062729 17062747 ACACAGTGGTACTCACCAC 59 NA Rattus norvegicus 81 Rn60_1_1348.1 ENSRNOG00000051253 ENSRNOT00000075872 1 1 1 81 1 133714508 133717212 GCAGATGGGAATGGAAATCTC 59 133714447 133714467 TTTAGATTTCCCATGTCCTGC 58 NA Rattus norvegicus 81 LOC100911130 ENSRNOG00000048613 ENSRNOT00000066373 3 1 1 102 X 15446957 15446975 ATTGTGGATGATTGTGGCG 59 15444356 15446891 GGTGTCGAATTCCAACAGG 59 NA Rattus norvegicus 81 Lypla1 ENSRNOG00000008320 ENSRNOT00000011312 3 1 1 80 5 14564648 14564666 AGGATTGGTAAATCCAGCC 57 14560968 14564604 TCCATCATTTCCTGCTGAC 58 NA Rattus norvegicus 81 Fermt1 ENSRNOG00000021274 ENSRNOT00000028901 1 1 1 80 3 125583773 125583791 GTTGACGAGGTAGAAGCAG 58 125581927 125583731 AATGTCCTCCAAAGTGTTGTC 59 NA Rattus norvegicus 81 Lipe ENSRNOG00000020546 ENSRNOT00000027910 2 1 1 88 1 82257058 82265668 CTACTGGGATACAGCCTCG 59 82256988 82257006 CCATGTTGTCTTCTGCGAG 59 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 3 2 2 84 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537950 19537968 GATGAGGAACTGTTTGGCA 58 NA Rattus norvegicus 81 Tmc2 ENSRNOG00000007017 ENSRNOT00000009323 2 1 1 80 3 122772387 122773017 GGAATGATCTGGATGGGCT 59 122773059 122773079 GAAGTACATGGAGGTCAACAG 59 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 1 2 2 80 11 459192 460551 TTCTTACGTAAACATGATGCCC 59 459133 459155 GTACTTCATACCAGATGCTATCC 58 NA Rattus norvegicus 81 Dpagt1 ENSRNOG00000009799 ENSRNOT00000013134 3 1 1 80 8 48662953 48662971 TTTCCTCTACTCACTGCCT 58 48663013 48663538 CCTGTCTTCGTATTGAGTCTG 58 NA Rattus norvegicus 81 Rassf9 ENSRNOG00000038574 ENSRNOT00000058842 3 1 1 85 7 44146726 44176795 GCGGCATAAGAACAGATCTC 59 44176843 44176861 CAATCTTCTCCTCCTGGCA 59 NA Rattus norvegicus 81 LOC100359668 ENSRNOG00000033776 ENSRNOT00000042177 3 1 1 60 6 76652362 76652382 CTCTGTGACTTCTTGGAAAGC 59 76652322 76652343 CCATCTTCTTGATGAGCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nkx2-8 ENSRNOG00000022970 ENSRNOT00000011562 2 1 1 112 6 77508297 77508317 GAATTTACCCGAACAGGATGC 60 77507579 77508223 CATCAGAGGACGGGTAGTG 59 NA Rattus norvegicus 81 LOC687609 ENSRNOG00000042607 ENSRNOT00000064390 3 1 1 89 12 38880583 38880859 CATTTCCCGAGCACTATGC 59 38880912 38880930 CGTAGAGGTTCAGGGTCAC 60 NA Rattus norvegicus 81 Krtap1-5 ENSRNOG00000054186 ENSRNOT00000084798 3 1 1 76 10 87500754 87500772 AGACAGGCTATGGCATTGG 60 87500696 87500715 TCTAACACGGTAGTTCACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc13a4 ENSRNOG00000011184 ENSRNOT00000059892 3 1 1 80 4 62799348 62800553 ATCCTATGTACCCTGTCCGA 60 62799287 62799307 AGCAAAGGAGATAGACATGGT 59 NA Rattus norvegicus 81 Arhgef25 ENSRNOG00000005034 ENSRNOT00000006800 1 1 1 80 7 70473532 70473552 GGATCATTCCAAACATTGCCT 59 70473341 70473490 TCCAGCATCCAGTTCTCAC 59 NA Rattus norvegicus 81 Sav1 ENSRNOG00000005264 ENSRNOT00000007314 2 1 1 92 6 92377380 92380193 CCCTGTGAAATACGACCAC 58 92377306 92377325 TTCATGAAGAGCAGCTTCAG 58 NA Rattus norvegicus 81 R3hdm4 ENSRNOG00000011489 ENSRNOT00000015869 1 1 1 80 7 12615232 12615589 ACCTATGTGGAGGTTTGGA 58 12615633 12615651 CTCATCCTCCAAGTAACGG 57 NA Rattus norvegicus 81 R3hdm4 ENSRNOG00000011489 ENSRNOT00000015869 3 1 1 80 7 12615231 12615589 CACCTATGTGGAGGTTTGGA 60 12615631 12615650 TCATCCTCCAAGTAACGGAG 59 NA Rattus norvegicus 81 Folr2 ENSRNOG00000019890 ENSRNOT00000026925 1 1 1 80 1 166916045 166919156 CTGCATGACCAGTGTAGTC 58 166915983 166916001 GGAGTTGTCCTTGTGTAGC 58 NA Rattus norvegicus 81 Mia2 ENSRNOG00000038832 ENSRNOT00000059335 3 1 1 83 6 80189047 80193698 GGAATGTGAAACTTTGATCACC 58 80193742 80193760 CCCGTAGTGAAGTTCAGGT 59 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 1 2 2 93 10 56768863 56769031 GAAAGGCTTTACGCACTGG 60 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 2 2 2 94 10 56768863 56769031 GAAAGGCTTTACGCACTGG 60 56769089 56769107 CATCTGAGGTGAAGTGTGC 59 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 2 1 1 175 7 122160543 122162675 AAAGGTCTAACTCCAGCAC 57 122162814 122162832 GACTTCAGAACGGTTAGGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 3 1 1 175 7 122160544 122162676 AAGGTCTAACTCCAGCACC 59 122162814 122162833 TGACTTCAGAACGGTTAGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC690335 ENSRNOG00000032771 ENSRNOT00000050217 1 1 1 60 6 95890018 95890036 TCGTTGTGGATGTTAAGGC 58 95889976 95889995 TCATAGAGTTTCTTCAGGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcas2 ENSRNOG00000018783 ENSRNOT00000025592 2 1 1 80 2 205669376 205670038 GGAGTCAAATTGGGTGTCG 59 205670078 205670100 TGATAGATCTCGTTCTCCAACTG 60 NA Rattus norvegicus 81 Vax1 ENSRNOG00000008824 ENSRNOT00000011743 2 1 1 114 1 280337452 280338582 CTAGTCCGAGATGCCAAGG 60 280337356 280337374 CCAGTCTGTAGAGCTGCTC 60 NA Rattus norvegicus 81 Lrrfip1 ENSRNOG00000019892 ENSRNOT00000050191 2 1 1 83 9 98240809 98245071 AGGGAGATCAAGGACTCTC 58 98245118 98245136 CTTCTCGTTGTCTAGCTGG 58 NA Rattus norvegicus 81 Cggbp1 ENSRNOG00000000718 ENSRNOT00000000909 3 1 1 81 11 1909368 1911669 AAATTAAGCCGAAGAGCCT 57 1911711 1911732 TCTTAGAACGATTTCTAGCAGG 58 NA InUTR Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695,ENSRNOT00000024526 2 2 2 153 9 100839074 100839092 AATTTGTACGCAAGACCCT 57 100839837 100839855 AAGAATGCAGCCTTCAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Anks6 ENSRNOG00000023309 ENSRNOT00000060005 3 1 1 82 5 62671158 62671176 TGATGTTACTCTTCGAGCC 57 62668386 62671113 GAACAAGTTCAGTGTCAGGA 58 NA Rattus norvegicus 81 Prlhr ENSRNOG00000009922 ENSRNOT00000013170 2 1 1 60 1 281754855 281754874 GCAAGATGCTTCTGTCTTGG 60 281754814 281754832 CTGACGGTCATATTCTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf4 ENSRNOG00000020890 ENSRNOT00000028355 2 1 1 179 1 218026050 218026068 AGACTCTACTGCAACGTGG 60 218026632 218027055 GGTAAAGAAAGGCACACCG 59 NA Rattus norvegicus 81 Arsb ENSRNOG00000011150 ENSRNOT00000014860 2 1 1 80 2 23385477 23385495 CTGGACAACTACTACGTGC 58 23385538 23399726 GCCCATATGGATCTGATAGC 58 NA Rattus norvegicus 81 Syce3 ENSRNOG00000042056 ENSRNOT00000064328 1 1 1 60 7 130368723 130368741 AGGCTGTTGGAAGAGATGG 59 130361082 130361101 CCATATCGTAGGCCATCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Lhfpl2 ENSRNOG00000011032 ENSRNOT00000014795 1 1 1 84 2 23827752 23848447 GAATCGCAGGTCTGTTCCT 60 23848495 23848513 TATCGTCCACAGTCGATGG 59 NA Rattus norvegicus 81 Defb17 ENSRNOG00000039640 ENSRNOT00000060793 1 1 1 60 9 24506386 24509644 TCGATCACAATACTAACAGGCA 60 24506347 24506365 TCCTCAAGTCCAAGCTACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362583 ENSRNOG00000030442 ENSRNOT00000045933 2 1 1 81 17 24610662 24610682 TGGCTCATGAGGTATGGAC 59 24610599 24610617 CGGTAGTGGATCTTTGCCT 60 NA Rattus norvegicus 81 Sqle ENSRNOG00000009550 ENSRNOT00000012883 1 1 1 80 7 99619948 99623070 CTACAGATGATTCCTTGCGTC 59 99623110 99623130 CAGGACCAGTCAAACATTCTC 59 NA Rattus norvegicus 81 Olr927 ENSRNOG00000048132 ENSRNOT00000050751 1 1 1 60 7 16305388 16305408 TGTCTGTTTGAAATTGGCTGG 60 16305430 16305448 CTGGGCTGATTCTACGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 2 2 2 81 1 127589307 127589325 CCTTGCTCCATTTCTCTGC 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 3 2 7 80 19 15116797 15116815 AAGAACTTCAACACCGTGC 59 15116857 15119210 AAATCTCATCATCGTTGGCAG 59 NA Rattus norvegicus 81 Prickle3 ENSRNOG00000022417 ENSRNOT00000013758 3 1 1 80 X 15685477 15685585 GTGATGAGATCATCTTCTCCC 58 15685417 15685435 ACTCGAAACAGCAGAAGTG 58 NA Rattus norvegicus 81 Vill ENSRNOG00000011446 ENSRNOT00000015888 3 1 1 80 8 127750106 127750124 CGGAAGTGGTGTTCTTTGG 59 127750167 127751881 ACAGGAAGATCTCCTGACAG 59 NA Rattus norvegicus 81 Slc25a21 ENSRNOG00000008931 ENSRNOT00000034342 1 1 1 80 6 77630182 77650869 CATCCAGTAAGGATCCAACCT 59 77630122 77630141 TAAAGACTGAGCCCACTGTC 60 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 1 3 3 80 8 90629318 90630521 CTGCTAAGAAAGAACCCGG 58 90629256 90629274 CTTCCTTTCCAGCTTCCTG 58 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000080675,ENSRNOT00000066545 2 2 2 80 6 147121631 147121652 AGATCTCTGGAAACATAGACAC 57 147121052 147121593 ATCCAATATGACTCTCACAGAC 58 NA Rattus norvegicus 81 Six4 ENSRNOG00000007250 ENSRNOT00000050138 1 1 1 80 6 95994077 95994095 GCCAGTTCCTTAATGGGAG 58 95989457 95994034 AAAGATGACCTTGTGAAGCT 58 NA Rattus norvegicus 81 Six4 ENSRNOG00000007250 ENSRNOT00000050138 3 1 1 80 6 95994076 95994094 CCAGTTCCTTAATGGGAGC 58 95989456 95994034 GAAAGATGACCTTGTGAAGCT 59 NA Rattus norvegicus 81 Bmp5 ENSRNOG00000010917 ENSRNOT00000014846 2 1 1 80 8 82943406 82947806 ATAGTCCAGACTCTGGTACAC 58 82947846 82947866 GATGGCATTTAGTTTGGTTGG 58 NA Rattus norvegicus 81 Tfap2b ENSRNOG00000011823 ENSRNOT00000030912,ENSRNOT00000090920 3 2 2 80 9 25433010 25433031 AGTATTTGAACAGACAGCACAC 59 25433072 25436009 TACAAAGTTGCTTGGTGGC 59 NA Rattus norvegicus 81 Ccdc38 ENSRNOG00000021892 ENSRNOT00000030985 2 1 1 80 7 34449980 34457555 AGATTTCTACTTGAGTACGCAG 58 34457594 34457614 ACTTTCTTTCGTGGCTATGAG 59 NA Rattus norvegicus 81 Eme2 ENSRNOG00000024867 ENSRNOT00000030458 2 1 1 84 10 14256053 14256071 AATGAGCAGGAACAGTTGC 59 14255364 14256005 AAGGTGGGTCTGTCATCTG 59 NA Rattus norvegicus 81 Kif2c ENSRNOG00000019100 ENSRNOT00000025903,ENSRNOT00000068395,ENSRNOT00000079371 3 3 3 80 5 136043345 136043364 TGAAGAACAAGCGAGAAGAG 58 136042789 136043305 GAAAGCTGTTGTCATATTCCTG 58 NA Rattus norvegicus 81 Gpr135 ENSRNOG00000004499 ENSRNOT00000005933 1 1 1 60 6 94817441 94817462 GCTCATCATGATTGTCTTTGTC 58 94817402 94817420 CAACAACACCAGGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan14 ENSRNOG00000010813 ENSRNOT00000014772 3 1 1 82 16 17588278 17588296 CTTCGAGAGCAACATCAGG 58 17588342 17590081 AGCACTGATTGGCTTTCTG 59 NA Rattus norvegicus 81 Hmox1 ENSRNOG00000014117 ENSRNOT00000019192 1 1 1 80 19 14513653 14513671 AGGAACACAAAGACCAGAG 57 14513712 14514772 CAGAGGTAGTATCTTGAACCAG 58 NA Rattus norvegicus 81 Hmox1 ENSRNOG00000014117 ENSRNOT00000019192 2 1 1 80 19 14512105 14513633 ACATTGAGCTGTTTGAGGAG 58 14513674 14513694 GAAGAAACTCTGTCTGTGAGG 58 NA Rattus norvegicus 81 Strap ENSRNOG00000007134 ENSRNOT00000009923 2 1 1 80 4 171734425 171734443 TTACCTGTTGACTGGAGGA 58 171734485 171736060 CTAATTTCCTTGGGTTCTGCT 58 NA Rattus norvegicus 81 Olr1369 ENSRNOG00000050820 ENSRNOT00000072476 3 1 1 60 10 12508513 12508531 AACCCTTTCATCTACAGCC 57 12508471 12508490 TGAGCACTTTCCTTAAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 3 2 2 81 3 119064055 119064073 CTACAGCAGACCTTCAGTG 58 119061243 119064010 TCTGCCAATGCATGAAGTC 59 NA Rattus norvegicus 81 Tex14 ENSRNOG00000023698 ENSRNOT00000009077 1 1 1 80 10 74786855 74786876 GAAGAAGATAGACTCTCCTCAG 57 74786917 74791662 GAACTATTTGGGCTTCCCT 57 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000011955 ENSRNOT00000015893 1 1 1 89 17 9234677 9234697 ACGGAGGATAAGATCAATGCT 59 9233700 9234626 ATTGGCCAGAGCATTAGCA 60 NA Rattus norvegicus 81 Mir26b ENSRNOG00000035608 ENSRNOT00000053731 3 1 1 60 9 81675283 81675303 ACCCAGTTCAAGTAATTCAGG 58 81675324 81675343 CCAAGTAATGGAGAACAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptchd4 ENSRNOG00000012708 ENSRNOT00000016940 1 1 1 80 9 21275942 21275963 ATCTTCTTCATCACTGATGGGA 59 21142694 21275902 TCCTTTAGTTCCATGACCCA 58 NA Rattus norvegicus 81 Mepe ENSRNOG00000002154 ENSRNOT00000002927 3 1 2 60 14 6791771 6791790 TGTCTGTTGGACTGTTCCTC 60 6783538 6791750 CCATCTTCATTCAGCTTTGGT 59 NA DesignRelaxed Rattus norvegicus 81 Yaf2 ENSRNOG00000004773 ENSRNOT00000006621 3 1 1 83 7 134507061 134507694 TCACAAGAGAACCAGACCA 58 134506996 134507014 ACTGTCAGGTCTCCAACAG 59 NA Rattus norvegicus 81 Hmx2 ENSRNOG00000020638 ENSRNOT00000028011 1 1 1 196 1 203521151 203521169 CTTGTCTGTGTCCTCGGAG 60 203522177 203522195 AAGGAGAAAGGAAAGGCGT 59 NA DesignNoJunction Rattus norvegicus 81 Cdyl ENSRNOG00000032215 ENSRNOT00000048757 3 1 1 81 17 29689593 29689611 GAAGCAAGATGGCTTCACC 59 29688368 29689548 TTCCTTCATCACCTCTGGG 59 NA Rattus norvegicus 81 Efhc1 ENSRNOG00000042729 ENSRNOT00000017393 1 1 1 80 9 27081475 27085237 GGATAACGGAAAGAATTTCCCTC 60 27085277 27085295 AAGTCCTTGGCAGTGTACC 60 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000084553 3 2 3 80 12 37408207 37408225 GAGAAGATGCCTCCTCTGG 59 37405540 37408164 TCTGAAGGACATTCTCCCTG 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000081903,ENSRNOT00000078412 3 2 4 80 20 12861793 12861811 CACAGAAGAACAACGTGTG 57 12861335 12861749 GGTTGAGGAGTCCATACAC 57 NA Rattus norvegicus 81 Ppm1j ENSRNOG00000012481 ENSRNOT00000016833 1 1 1 80 2 207265175 207265614 TAGCCATAACCAGGGATTCAG 59 207265656 207265674 GAAGCCATTTCAGCTGCTC 60 NA Rattus norvegicus 81 Rp1 ENSRNOG00000008807 ENSRNOT00000047093 3 1 1 83 5 15044130 15051301 AAAGGTTCAAGTTCTGGTCTC 58 15051345 15051364 CCTTCAGAAGAAGTCAGACG 58 NA InUTR Rattus norvegicus 81 Aldob ENSRNOG00000006807 ENSRNOT00000086505,ENSRNOT00000009111 3 2 2 82 5 64810549 64810567 CTTCCAGCCTTGCTATCCA 60 64809167 64810505 AATAGGTACCAGCCCATTCTG 60 NA Rattus norvegicus 81 Camlg ENSRNOG00000021911 ENSRNOT00000037088 1 1 1 82 17 9524390 9529190 TTCCTAAGGGTGAGAAGAAGG 59 9524328 9524346 GTTTATCACCTCAGCCGGA 60 NA Rattus norvegicus 81 Gltpd2 ENSRNOG00000026488 ENSRNOT00000029230 1 1 1 84 10 57126727 57126745 CTTTCCTGGCCTGTATGAG 58 57126790 57126899 GTTAGGAGCCTAAGTAGTTCTC 58 NA Rattus norvegicus 81 Gltpd2 ENSRNOG00000026488 ENSRNOT00000029230 2 1 1 84 10 57126728 57126746 TTTCCTGGCCTGTATGAGC 60 57126790 57126900 GGTTAGGAGCCTAAGTAGTTCTC 60 NA Rattus norvegicus 81 Gpr89b ENSRNOG00000000095 ENSRNOT00000000106 3 1 1 80 2 199020978 199021976 TACTTCCTCAGGAATGTGACTG 60 199020919 199020940 GCTTATGATCATGTCCATGGTC 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315,ENSRNOT00000089041 2 2 2 94 16 10948563 10948581 ATCTTCAGGGCCATTCGAG 60 10948185 10948203 CATTCACTCTGTAGCCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Il18 ENSRNOG00000009848 ENSRNOT00000013093 1 1 1 80 8 55013718 55013738 CTATCTGTGAAGGATGGAAGG 58 55013778 55015956 TTCAGGTGGATTCATTTCCTC 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410,ENSRNOT00000087912 1 3 6 63 20 4614039 4614057 ACGATCACGATTTCAACCC 58 4614208 4614226 ATGATGACTGAGCCGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342,ENSRNOT00000025266 2 2 2 101 7 11947792 11950749 TCGCCTAGGAAAGAACCTG 59 11947628 11947647 TTGTAGAAGCGGTACTCCAG 59 NA Rattus norvegicus 81 Zfp719 ENSRNOG00000033729 ENSRNOT00000024645 1 1 1 83 1 99507963 99510587 GGCAGTGGGTAAATTGCAG 60 99510634 99510652 ACTTCGTTGGTTGCATCAG 59 NA Rattus norvegicus 81 Xcl1 ENSRNOG00000002964 ENSRNOT00000003976 1 1 1 81 13 83200378 83200396 GTGAGCTTAAGAACCCAGC 59 83199569 83200335 AAATTACAGCTCTCATGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Mir487b ENSRNOG00000036489 ENSRNOT00000054597 2 1 1 60 6 133877135 133877153 GAGTGGTTATCCCTGTCCT 58 133877176 133877195 AAAGTGGATGACCCTGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809,ENSRNOT00000028347 1 2 2 80 1 226853528 226853853 AAGGACAATATGCCCTCCC 59 226853466 226853486 GATGGTAGTTGTTGATCCCTG 59 NA Rattus norvegicus 81 Spc24 ENSRNOG00000029862 ENSRNOT00000045384 3 1 1 83 8 22780933 22781832 GATGGTCAAGGGCATTCAC 59 22780868 22780888 CTGATGAACTTCTGTGAGAGC 59 NA Rattus norvegicus 81 Creg1 ENSRNOG00000003291 ENSRNOT00000004394 1 1 1 83 13 83977748 83978896 GGGACTGTGATCAAAGTAAATGAG 60 83978937 83978956 CCAGTGTTTCATCTCAGGGT 60 NA Rattus norvegicus 81 LOC688459 ENSRNOG00000048967 ENSRNOT00000073595 1 1 1 83 9 23421370 23421388 CTGAGATGTCCTCTGTGGC 60 23421433 23424327 AAATGTTCTTCACCACCAGTG 59 NA InUTR Rattus norvegicus 81 Olr1515 ENSRNOG00000048395 ENSRNOT00000043358 1 1 1 60 10 62428266 62428287 GTGCTTTGGGACAGTAATAAGG 59 62428306 62428326 CACTGAGTTAGAGGAAGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp16 ENSRNOG00000001598 ENSRNOT00000002173 3 1 1 80 11 27110315 27110334 CTACACAACACCAAGGTCTG 59 27110375 27111970 TCATCACACTTGTAACACCAG 58 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 1 2 2 81 9 19126819 19134319 TGTGGTCAAGATTGTGGCT 60 19126756 19126774 ATTCTTGAGGTACCGCCAC 60 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836,ENSRNOT00000064472 3 2 2 80 5 151454914 151454932 ACCATAGAAGAGGCAGAGC 59 151453365 151454795 GAAATCAGGCTCTTGGGTC 58 NA Rattus norvegicus 81 Wnt3 ENSRNOG00000003845 ENSRNOT00000005176 3 1 1 126 10 91830820 91864994 TACCCAATTTGGTGGTCCC 60 91865084 91865102 TCTCGATGTAATTGCGGCA 60 NA Rattus norvegicus 81 Rnf121 ENSRNOG00000020175 ENSRNOT00000027321 1 1 1 80 1 167111078 167111098 TACTATGGAGTTCTTGAGCGA 58 167099132 167111036 CGACTCACTGTAGAACCCT 59 NA Rattus norvegicus 81 Il17f ENSRNOG00000012509 ENSRNOT00000016717 1 1 1 80 9 26886542 26887921 GATTACAATATCACCCGAGACC 59 26886483 26886502 GTTGATACAGCCTGAGTGTC 58 NA Rattus norvegicus 81 RGD1307704 ENSRNOG00000010126 ENSRNOT00000013431 1 1 1 60 6 107430314 107430333 AGACTTCATTCACGATTCCC 58 107430356 107430374 CACACTTAGAGCCCTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307704 ENSRNOG00000010126 ENSRNOT00000013431 2 1 1 60 6 107430314 107430334 AGACTTCATTCACGATTCCCT 59 107430356 107430374 CACACTTAGAGCCCTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xkr4 ENSRNOG00000027276 ENSRNOT00000029503 2 1 1 96 5 16003760 16139193 GTCTGGAGGTATTTGCACAC 59 16003683 16003702 ACTCGTACACCATCTTCCAG 59 NA Rattus norvegicus 81 AABR07072539.1 ENSRNOG00000031716 ENSRNOT00000043852 2 1 1 80 17 15549811 15549832 TGCATTTATGGAGACTTCACTG 59 15548024 15549772 GATTGAATTCCCAACCAGCTC 60 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 1 2 2 100 7 117777586 117777604 CTCAGCACAGAAAGCATGC 60 117777668 117777878 GTATGCTTCCTGCAAACGG 60 NA Rattus norvegicus 81 Pnma1 ENSRNOG00000010553 ENSRNOT00000014018 3 1 1 60 6 107631973 107631991 CTTTGATTCCTGGCTGGAG 58 107631931 107631952 TATATCAGACACCTGCCATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Renbp ENSRNOG00000054765 ENSRNOT00000083442 2 1 1 80 X 156856216 156856235 GATGACCGACAAGTATGCAG 59 156856277 156856924 ACAACTTGTCCATCCCTCTG 60 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020,ENSRNOT00000079072 1 2 2 80 1 186148241 186148262 CAGGAAAGTCAAGTGAAGATGG 59 186148303 186169956 CTTTGCTTCCTTCTGCGTC 60 NA Rattus norvegicus 81 Paqr8 ENSRNOG00000012830 ENSRNOT00000029696 1 1 1 134 9 27047648 27049825 TTCTACAAAGGTTGTCCTACTG 58 27049920 27049938 CTTCCAGAATCTTGGGCAG 58 NA InUTR Rattus norvegicus 81 Crb2 ENSRNOG00000025498 ENSRNOT00000037257 2 1 1 80 3 22050102 22050120 ATGTCTCAACGGAGGTAGC 59 22050162 22052339 CATGTCAGTCCTGTGTATCCA 60 NA Rattus norvegicus 81 Inhbe ENSRNOG00000007601 ENSRNOT00000010106 1 1 1 123 7 70642645 70642663 AATAACTCGTCCTCTGCCC 59 70642167 70642560 AGTGGATTTGTCTATGCTGGT 60 NA Rattus norvegicus 81 Inhbe ENSRNOG00000007601 ENSRNOT00000010106 3 1 1 124 7 70642645 70642663 AATAACTCGTCCTCTGCCC 59 70642166 70642559 AAGTGGATTTGTCTATGCTGG 58 NA Rattus norvegicus 81 C8a ENSRNOG00000007697 ENSRNOT00000067850 1 1 1 82 5 124359475 124359495 CAGTGCTATTACATACCGGTC 58 124354876 124359431 GATAGATGGGCTGCATCTC 58 NA Rattus norvegicus 81 Arrb2 ENSRNOG00000019308 ENSRNOT00000026207 1 1 1 80 10 57043763 57043782 ACTTGGACAAAGTGGATCCT 59 57043929 57044133 GGGTCACAAACACTTTCCG 59 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 3 2 2 80 13 74796683 74796701 GCTCCAGTCCAAATGTCAG 59 74795828 74796641 TATGCAAATCACTGTCAGTGG 59 NA Rattus norvegicus 81 Atxn1 ENSRNOG00000016998 ENSRNOT00000023140 3 1 1 95 17 19520511 19520530 AGTACTGTGGAGAGGATCGA 60 19520588 19531969 AACTTCGACACTGACCTGG 60 NA Rattus norvegicus 81 Krt28 ENSRNOG00000011846 ENSRNOT00000044206 1 1 1 80 10 87284522 87284542 CAAGAGCTGCAGTATGAATCC 59 87282815 87284482 CTGCAGAACCTTCATTTCCTC 59 NA Rattus norvegicus 81 Lrrc14b ENSRNOG00000028357 ENSRNOT00000034704 3 1 1 61 1 31531971 31531991 CTCACTGAGCTAAGTGTAGCT 59 31532014 31533629 GGGCTAAGCAATGTTTGGA 58 NA DesignNoJunction Rattus norvegicus 81 LOC302157 ENSRNOG00000047443 ENSRNOT00000075166 3 1 1 60 2 153140728 153140747 GTCCATTCTCAAGCTCACTG 59 153140687 153140706 TCCCTATGACCATATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437,ENSRNOT00000032792 1 2 2 80 8 94466830 94473238 GATCTACTGGCTGGATTTGG 58 94466769 94466788 TTGCAGCAGGTTATTCTGAG 58 NA Rattus norvegicus 81 Sapcd1 ENSRNOG00000000858 ENSRNOT00000080415 2 1 1 61 20 5019705 5019945 AACTTCTTCCTCTGGCCAG 59 5019662 5019680 ACAGAGCATCTTGTTCCCT 59 NA DesignRelaxed Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241,ENSRNOT00000031680 2 2 2 61 16 18640762 18640781 ATAGAGTACCTGGCTCACTG 58 18640396 18640739 TTCTTCTCTTCAGCTTTGGT 57 NA DesignNoJunction Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 1 3 3 80 7 2470085 2470104 GGCTGTTTCCAACATTCAGG 60 2470147 2470295 CCCGTTTCATCAACCTCCT 60 NA Rattus norvegicus 81 Trex2 ENSRNOG00000056983 ENSRNOT00000081973 2 1 1 60 X 157375210 157375230 AGTGAGATTACTGGTTTGAGC 58 157375252 157375270 CATTGAAAGCAGCCTTCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707,ENSRNOT00000073355 1 2 2 80 1 128686481 128686501 AGACGTTCTTGTATGGATCAC 58 128686543 128687352 TCTCGGAGATCTTGGACAG 58 NA Rattus norvegicus 81 LOC678817 ENSRNOG00000030039 ENSRNOT00000059380 2 1 1 80 2 90554567 90555541 GGATCTTTAAGGACTTCCTCCA 59 90554508 90554526 CGGTTACAGCAATCCACTC 59 NA Rattus norvegicus 81 Ndufb2 ENSRNOG00000026616 ENSRNOT00000030892 3 1 1 81 4 67383939 67383959 AGTGGACAGATGAAGAACTGG 60 67384002 67385198 TCACCTTGCTCTCGTACAG 59 NA InUTR Rattus norvegicus 81 Casp14 ENSRNOG00000007352 ENSRNOT00000009643 1 1 1 80 7 13941165 13941183 CCCTAGAACGCATGTTCCA 60 13941224 13941345 TATCATCCAGAAATTGCTGAGC 59 NA Rattus norvegicus 81 Idh3g ENSRNOG00000055572 ENSRNOT00000081819 2 1 1 80 X 157005260 157005278 CTGATGAGGAGGACATCCG 59 157005320 157006491 GATTTGTTTCGATGTTGCCCT 60 NA Rattus norvegicus 81 Idh3g ENSRNOG00000055572 ENSRNOT00000081819 3 1 1 80 X 157004911 157004933 GCATACAGTGACTATGATTCCAG 59 157004973 157005218 CATGCATGCCTGAATACCG 60 NA Rattus norvegicus 81 Crhr1 ENSRNOG00000004900 ENSRNOT00000006764,ENSRNOT00000032941 1 2 2 80 10 92218711 92222964 CTACAACACGACAAACAATGG 58 92223003 92223024 TGGCACTCAGAATAATTCACAC 59 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076069,ENSRNOT00000000787 1 2 3 80 20 21857340 21857358 TTTACGACGAGTTAGGCGG 60 21857399 21874602 GCAGGATTAACCTTTCGTAGTG 60 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 1 2 2 80 8 76870387 76874414 ACTTCCCTTAATGGTCCCT 58 76870325 76870343 CTGAATGATGTTCCGTCCA 58 NA Rattus norvegicus 81 Slc8b1 ENSRNOG00000001383 ENSRNOT00000038736 3 1 1 80 12 41578898 41578916 ATCTGCACTTGGGTCTACC 59 41576896 41578855 ATCAGTCAGTAGCTCTGGTG 59 NA Rattus norvegicus 81 RGD1305014 ENSRNOG00000020597 ENSRNOT00000027956 2 1 1 81 1 201940901 201940923 TGGAAGTATACTTAGGAGAGGAG 58 201940135 201940862 TCATGTTCACTGTTATCCAGG 58 NA Rattus norvegicus 81 Aldh9a1 ENSRNOG00000004027 ENSRNOT00000005611 1 1 1 80 13 85587885 85588435 ACTGGCATGAAGATCATGG 58 85588479 85588497 GATCAGAGGAGATTTGCCC 58 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 3 2 2 88 5 136705422 136705440 AGGTTGTCAGACACCTGAG 59 136704563 136704913 CATTTCCAGACAGTGCTGC 60 NA Rattus norvegicus 81 Vom2r19 ENSRNOG00000046198 ENSRNOT00000046796 3 1 1 80 1 65412350 65413660 TTATAGCTGCAAGAAGCTGTG 59 65413700 65413720 TGGTTCATACTCACTCTGTCC 59 NA Rattus norvegicus 81 AC098462.1 ENSRNOG00000054778 ENSRNOT00000079358 2 1 1 60 1 63246477 63246495 CTCACCAGAATCTCAAGCC 58 63246519 63246537 AAATGCCAGGAAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdha ENSRNOG00000013331 ENSRNOT00000018336 3 1 1 80 1 31569530 31569548 AGCAGAAGAAGCCATTTGC 59 31569591 31570259 CCAAAGTAACCTTCCCAGTC 58 NA Rattus norvegicus 81 Otud5 ENSRNOG00000008764 ENSRNOT00000006233 2 1 1 80 X 15472593 15472611 CTCTTGTGTCCCTCTACCC 59 15472252 15472551 AATCATTCAGACCAAAGGCAG 59 NA Rattus norvegicus 81 Nras ENSRNOG00000023079 ENSRNOT00000039572 2 1 1 80 2 205555368 205558604 TATTAACCTCTACAGGGAGCA 58 205558646 205558664 TCACACTTGTTCCCTACCA 58 NA Rattus norvegicus 81 Hes7 ENSRNOG00000007391 ENSRNOT00000009757 2 1 1 81 10 55708172 55708190 CCTAGAAGAGCTGAGGCTG 59 55708783 55708802 TATCTCTGCTTTCTCCAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Fam21c ENSRNOG00000011653 ENSRNOT00000015620 3 1 1 80 4 148190782 148190802 ACAAACCTCCTGAATTGACTG 59 148190843 148191748 TGAGACCTGAAGAATCCTGG 59 NA Rattus norvegicus 81 Tmem14a ENSRNOG00000013238 ENSRNOT00000037489 1 1 1 80 9 27349478 27350053 CAAAGTGTCACTGTTTACAGC 58 27350094 27350113 GCAGGCATTACTTTCTTGGA 59 NA Rattus norvegicus 81 Synm ENSRNOG00000014030 ENSRNOT00000050832 2 1 1 80 1 128701348 128701367 CCTTGTTGGAAGGAGAAAGC 59 128698301 128701305 TGTTTCTGGACTCTCGTGG 59 NA Rattus norvegicus 81 Fam168b ENSRNOG00000023467 ENSRNOT00000039480 3 1 1 88 9 41321593 41331512 GGATATCCAGCTGGTTTCC 58 41321523 41321541 GTTTGGAAGGTAGGGTTCG 58 NA Rattus norvegicus 81 Rb1cc1 ENSRNOG00000006833 ENSRNOT00000061884 1 1 1 80 5 13064985 13065009 GTTCAAGATAGACCTAATGATGTGG 60 13061264 13064950 AATAATCTTTGGGTCAAGCCTG 59 NA Rattus norvegicus 81 Rad54l ENSRNOG00000013148 ENSRNOT00000018004 2 1 1 80 5 134952820 134954484 ATCAGTATTGTGAACAGGTGC 59 134952760 134952779 CACCTGCTCAATCTTCACTG 59 NA Rattus norvegicus 81 Ttc12 ENSRNOG00000008595 ENSRNOT00000011454 2 1 1 80 8 53786265 53788679 CATTGACAACGAGGAGAACC 59 53786204 53786223 CTGGAGTCCATGAAGGAAGG 60 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 1 2 3 80 10 87345696 87345908 AGAGACAGACTCAAACTCTGG 59 87345636 87345654 GTTCCGTGACTTGAACCTC 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217,ENSRNOT00000086660,ENSRNOT00000014207 1 3 3 80 4 147705738 147705757 GATCACTGCAGTCAAGTTCC 59 147705798 147708190 ATGAACTCTGCAATGAAGCTC 59 NA Rattus norvegicus 81 Sars2 ENSRNOG00000019962 ENSRNOT00000027166 2 1 1 83 1 86931807 86931914 ATCACTTCGCTAAGGTGGAG 60 86931960 86931978 GAGACAGGAACTCCTCCAG 59 NA Rattus norvegicus 81 Cebpz ENSRNOG00000005087 ENSRNOT00000006824 3 1 1 80 6 1534373 1534391 CGAGGAGGATAGCGATGAG 59 1533426 1534329 AGGTAATCTTGCTTCGTGC 58 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149,ENSRNOT00000055829 2 2 2 80 1 134844970 134848683 GATGTGAAGAAGATGTGGGA 57 134844909 134844927 TCGTGATGGTTCTTGTCTG 58 NA Rattus norvegicus 81 Ilvbl ENSRNOG00000028512 ENSRNOT00000039852 2 1 1 80 7 14045159 14045177 GTTGGACCCAGATTTCTCG 58 14045000 14045116 TGTGATAATCGGTGTAAGCC 58 NA Rattus norvegicus 81 Vipr2 ENSRNOG00000004317 ENSRNOT00000005876 3 1 1 80 6 143998817 144000136 TCTTTAGAAGACACAGGTTGC 58 144000176 144000196 AGAAATTAGAATGGGCATCCG 59 NA Rattus norvegicus 81 Zcrb1 ENSRNOG00000004996 ENSRNOT00000006780 2 1 1 106 7 134595822 134595843 TAGGAAGAGTAAAGGTGTTGCA 60 134595447 134595761 CCTTTATCACTCTACCGAATAACTG 59 NA Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 1 2 2 80 1 126963353 126964822 AGAATTTGCCGTATAGGTGAG 58 126964862 126964882 CACTAGACTGTTGTTGGTGAG 59 NA Rattus norvegicus 81 Zfp324 ENSRNOG00000027436 ENSRNOT00000036874 1 1 1 81 1 65608782 65609248 CTCCATAGGACCCTCTGTC 58 65608719 65608737 TGTCCTATTGGGAACCCAG 59 NA Rattus norvegicus 81 Rnf19a ENSRNOG00000009658 ENSRNOT00000013344 1 1 1 80 7 75062787 75062805 CAGTGATAATGCCAGCACC 59 75060860 75062745 ATACTGTTCCCTTCTCTGTCC 59 NA Rattus norvegicus 81 Olr1389 ENSRNOG00000050601 ENSRNOT00000047454 1 1 1 60 10 34578738 34578757 GTCCTCTCCTCTACACAACC 59 34578779 34578798 GATGAGATAGCCAAAGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cx3cr1 ENSRNOG00000018509 ENSRNOT00000025019 3 1 1 60 8 128741851 128741869 GGAATCTGTTGGTGGTCCT 59 128741809 128741827 ATGTCAGTGATGCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 2 2 2 80 13 86424529 86424547 TTATCAGCCAGACAGGAGG 59 86391998 86424485 CTCCATTAGCACTGATGCC 58 NA Rattus norvegicus 81 Rbp3 ENSRNOG00000051911 ENSRNOT00000090679 3 1 1 80 16 10284444 10284462 GGACAAGATCTACAACCGG 58 10284506 10285936 GAGCCATATCGTTCACCTG 58 NA Rattus norvegicus 81 Cdc34 ENSRNOG00000060530 ENSRNOT00000088330 3 1 1 93 7 12902537 12902683 AATGTCAGGACCATCCTCC 59 12902462 12902480 TTCTGTACATCACCGAGGC 60 NA Rattus norvegicus 81 Hsd17b10 ENSRNOG00000003049 ENSRNOT00000043559 2 1 1 80 X 21698283 21698303 GTGGCCATTAAGACATACCAC 59 21698342 21698491 GAGATTCACATTGATAACCCGC 60 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 3 3 3 80 7 68452993 68453012 GTACTGGAATGATCTTGGCT 57 68450351 68452952 ATCCTAAACCTCCAATGAAGC 58 NA Rattus norvegicus 81 AC118490.1 ENSRNOG00000010101 ENSRNOT00000013395 2 1 1 84 3 75414689 75414712 GCTTGGCCATTCTGTATAAGAG 59 75414756 75414775 ATAGCTCTGTCACAGTCTCG 59 NA Rattus norvegicus 81 Cfc1 ENSRNOG00000042646 ENSRNOT00000066284 1 1 1 86 9 41046176 41046280 AGAGACACAGAGACTGTGG 58 41046330 41046348 AAAGGGCTGAGAAGATGCA 59 NA Rattus norvegicus 81 Apof ENSRNOG00000033619 ENSRNOT00000041341 1 1 1 114 7 2689583 2689842 ACTATATGGGTGCTCAGCTC 59 2689919 2689937 ATCGTAGAGACACCCTTCG 59 NA InUTR Rattus norvegicus 81 AABR07002247.1 ENSRNOG00000050476 ENSRNOT00000073121 2 1 1 80 1 69692262 69692299 CAAATCCAAAGAACTCACAACG 59 69692339 69692358 CAAGACTGTAGCTTTGCCTG 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834,ENSRNOT00000066114 1 2 2 83 3 119719203 119723823 CAAGTCATTTGATGAGAATGGC 58 119723867 119723885 CTGACACAGTATCGAGGGA 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 2 8 10 80 10 87128342 87128362 ATTACAATCCCAAAGCCTCCA 60 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Zap70 ENSRNOG00000016995 ENSRNOT00000023036 3 1 1 80 9 43351694 43352721 GACTGCTGGATATACAAGTGG 58 43352760 43352781 CATGCTGTAGTAATAGGTCCTC 58 NA Rattus norvegicus 81 Dgkk ENSRNOG00000039323 ENSRNOT00000060247 3 1 1 80 X 16457548 16457569 TTGTAGTGCTCAACATTACCAG 59 16456865 16457507 GGGCCTCATATTCTGTGGT 59 NA Rattus norvegicus 81 Ms4a4c ENSRNOG00000020997 ENSRNOT00000033613 2 1 1 80 1 227658500 227658520 CTAGAATTCTGCATTGCTGTG 58 227658559 227660993 CACTACAAGAACCTCACTAGAG 58 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000041571,ENSRNOT00000052017 1 3 3 80 4 150698203 150698223 GTTTCGTCATTGTCACCTTCC 60 150696661 150698164 CACATTGTCTCTGGTTCTTGTC 60 NA Rattus norvegicus 81 Glipr1l2 ENSRNOG00000049053 ENSRNOT00000073180 3 1 1 82 7 54812149 54812168 GTTACTCCATGTGCAAAGGT 59 54811040 54812104 CTTGTCAGTGTTCCTCCTG 58 NA Rattus norvegicus 81 Ttll4 ENSRNOG00000017129 ENSRNOT00000023067 1 1 1 80 9 81943038 81943416 GAATGAAGAAGAGGAAGGAGAC 58 81943456 81943475 CGAGATATTATTGCCACCGA 58 NA Rattus norvegicus 81 Gsg2 ENSRNOG00000048660 ENSRNOT00000074018 2 1 1 60 10 59697500 59697519 GGACCACAGAAGCTAAGGAG 60 59697459 59697478 TCACAACACGATTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853,ENSRNOT00000079510,ENSRNOT00000064756 2 3 3 80 12 44122349 44122368 CTTCACCTGTGTCAACATCC 59 44122411 44132258 TCATGAAGCCTCACTCTCC 59 NA Rattus norvegicus 81 Smim17 ENSRNOG00000042502 ENSRNOT00000064949 1 1 1 80 1 71119691 71119709 TCTTCTCAAGAGACTGGGC 59 71116749 71119647 CACAAAGCCCTGAGAATCC 59 NA Rattus norvegicus 81 Wif1 ENSRNOG00000004476 ENSRNOT00000006426 1 1 1 80 7 63139713 63139732 ATAAAGGCATCATGGCAGAC 58 63139774 63146192 CAACTTGAACAACTGATGCC 58 NA Rattus norvegicus 81 Ankrd50 ENSRNOG00000010534 ENSRNOT00000045837 3 1 1 80 2 125297018 125302523 AATGTTTACTGGGTTCCGGA 59 125296957 125296977 AGGATGTACTGCTGTACATCC 59 NA Rattus norvegicus 81 Neu4 ENSRNOG00000019031 ENSRNOT00000065533 1 1 1 105 9 101285030 101286509 CTATTGCTTTACGCTCCCTG 59 101286577 101286595 GTCAGACCAGTCCTTTCCC 60 NA InUTR Rattus norvegicus 81 Tmem232 ENSRNOG00000031348 ENSRNOT00000034759 2 1 1 80 9 113161683 113161702 AGATGCCCGAATTAGATGGA 59 113132635 113161641 CCTTCGCACAGTTATCAGAG 59 NA Rattus norvegicus 81 Olr205 ENSRNOG00000045596 ENSRNOT00000047222 2 1 1 60 2 4820743 4820762 CTCATCTGATTGTGGTTGGG 59 4820784 4820803 CTGGGAAGGACATACATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000086187,ENSRNOT00000049624 2 2 2 80 19 22120233 22121299 AATCACGCTCTCATAACACAG 59 22120173 22120191 ACAGAGCTTCATCGTCCAG 60 NA Rattus norvegicus 81 Rpsa ENSRNOG00000018645 ENSRNOT00000025225 2 1 1 90 8 128806858 128806876 CAGGAACCCACTTAGGTGG 60 128806927 128807492 AGGTTGATGATGTAGATACCGT 59 NA Rattus norvegicus 81 LOC100909885 ENSRNOG00000049554 ENSRNOT00000072517 1 1 1 60 2 35178609 35178630 ATCTATGTGTTGACAGTAGTGG 58 35178651 35178669 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc8 ENSRNOG00000019766 ENSRNOT00000026757 2 1 1 60 19 57647620 57647639 AACGCATCCTTCCTTTACGA 60 57647579 57647597 CACCTTCCTCAAACCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 1 2 2 89 9 42881973 42882294 CTATGAGAGGCTGGTCCTC 59 42882347 42882365 TTGTATTGCTTCCTGGGCT 59 NA Rattus norvegicus 81 RGD1563746 ENSRNOG00000021953 ENSRNOT00000032856 3 1 1 80 10 90623790 90623809 ATCTGATGTGTTCAACAGCA 58 90623851 90628422 ACATTGTCTTCATTCTGCGA 58 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000009082,ENSRNOT00000044363 1 2 2 80 10 57607922 57607941 GTGCAAGAAGTAATGGAGGA 58 57607983 57609258 CAATTCCAACTGAAGCAAGG 58 NA Rattus norvegicus 81 Napb ENSRNOG00000004753 ENSRNOT00000006329 3 1 1 80 3 143020756 143022070 CTTACACTGAAGCAGTGAAGG 59 143020696 143020716 TCTTGATACGAAGCAACATGG 59 NA Rattus norvegicus 81 Mterfd3 ENSRNOG00000006978 ENSRNOT00000009135 2 1 1 90 7 24640130 24646897 GACTGTAAGGCACAGTGTG 59 24646951 24646969 GTATCCTGTCAGCAACCTC 58 NA InUTR Rattus norvegicus 81 Arhgap40 ENSRNOG00000015359 ENSRNOT00000040516 2 1 1 81 3 155018885 155018904 GTGCTTCTACAGAGGACCTG 60 155018948 155021480 TGGGAATTCTGAACCTCGG 59 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 1 2 2 80 13 85476280 85476299 GGATGAAATCCATGTTTGCG 58 85476339 85481540 CCACTCTACCATCAAATATGGA 58 NA Rattus norvegicus 81 Wrb ENSRNOG00000001629 ENSRNOT00000002222 1 1 1 80 11 36497668 36505289 GACCTTGTCCTCGTTTATTTCC 59 36505330 36505348 ATGCTCTGGATCTCTGCTC 59 NA Rattus norvegicus 81 Cnnm3 ENSRNOG00000016032 ENSRNOT00000021592 1 1 1 80 9 43100645 43101620 GAAGACTACTCAGACACAAAGG 59 43101659 43101679 TAAGGAGAATTCCTCCTTCCG 59 NA Rattus norvegicus 81 Klhdc9 ENSRNOG00000004022 ENSRNOT00000005352 2 1 1 91 13 89743549 89744401 ATGATACCCGCAAGTCTCC 59 89743476 89743494 GTTCCAAAGGCAAGTACGG 59 NA Rattus norvegicus 81 Trank1 ENSRNOG00000021091 ENSRNOT00000028633 2 1 1 80 8 119605814 119605833 GGAACTTCAGAGCTGTTGAC 59 119605875 119614472 CAGAGATTTCTGATCGGCCT 60 NA Rattus norvegicus 81 Vom2r27 ENSRNOG00000048635 ENSRNOT00000036807 3 1 1 80 1 64681120 64681140 TCCAAAGGAACAGAAACTGTC 59 64680017 64681081 CATACAGACTGTGGAATCTCTG 58 NA Rattus norvegicus 81 AABR07055673.1 ENSRNOG00000048102 ENSRNOT00000075705 2 1 1 80 7 7675456 7675480 GATACGAAGATCCTACTGATGG 58 7675518 7675539 ATAGGACAGAATTACCAAAGCC 58 NA Rattus norvegicus 81 Slc38a3 ENSRNOG00000016827 ENSRNOT00000023623 3 1 1 80 8 116407306 116409301 GGATCATTGGTGCTACATCTG 59 116407246 116407264 TCTCAGTGGGCATGATTCG 60 NA Rattus norvegicus 81 RGD1564617 ENSRNOG00000050463 ENSRNOT00000072809 1 1 1 60 9 52393845 52393864 GTGACGCAATACAAGAATGG 58 52393887 52393905 TGTCATAACGCTGCTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop56 ENSRNOG00000007128 ENSRNOT00000009564 2 1 1 80 3 122805281 122805305 GATCATTCAGTCTATAAGCCTTCTG 59 122805343 122805672 CCATACCACTCCCTGACAC 60 NA Rattus norvegicus 81 Sohlh2 ENSRNOG00000038091 ENSRNOT00000044424 3 1 1 80 2 144606494 144606513 AGGCCACAGTTGATTATGTG 58 144606553 144606694 TCTGAAGGGATTCTGTAATCTG 57 NA Rattus norvegicus 81 Gpr182 ENSRNOG00000004311 ENSRNOT00000005693 2 1 1 133 7 71046628 71046646 CATTACCAAAGAGGGCAGC 59 71046064 71046532 CATAGTGAGCTTAGCTGGCT 60 NA InUTR Rattus norvegicus 81 Kiz ENSRNOG00000025141 ENSRNOT00000036527 3 1 1 80 3 141157911 141171770 TTGTCAAGGCATGAAAGCA 58 141173567 141173586 GTTACTGTCATCAGACTCCC 58 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545,ENSRNOT00000080755 3 2 2 86 1 67831819 67831842 CTCCATGAGAATAATCTGCAAGAG 60 67825939 67831776 TGAGTTTACCTTCAAGCAGTG 59 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124,ENSRNOT00000016740 2 2 2 80 1 244661988 244662006 ATGCTAACACCGAAAGGGA 59 244662050 244664228 CATCTTCAGCCATCAGCCT 60 NA Rattus norvegicus 81 Isl2 ENSRNOG00000015336 ENSRNOT00000021074 3 1 1 111 8 60121651 60121969 AACAGCTGGTCTCCTTCTC 59 60122041 60122062 GGACTAGGTACCATACTGTTGG 60 NA Rattus norvegicus 81 Tmem8b ENSRNOG00000015664 ENSRNOT00000021227 2 1 1 80 5 59186270 59191040 GTTCTTCTCCACGTTCTACC 58 59191082 59191101 AACTGAAGCACATCGTAGTC 58 NA Rattus norvegicus 81 Chrnb1 ENSRNOG00000014698 ENSRNOT00000019947 3 1 1 80 10 56393520 56393538 GTTGTGGTCCTCAACTTGC 59 56392448 56393478 CTTGTGAATGAAGATCTGGCG 60 NA Rattus norvegicus 81 Sec23b ENSRNOG00000008411 ENSRNOT00000064723 3 1 1 80 3 138735276 138736180 TGTCAATCAGCACAATGCC 59 138736223 138736242 GTGCTGGAATGCTGATACTG 59 NA Rattus norvegicus 81 LOC682512 ENSRNOG00000036588 ENSRNOT00000045446 3 1 1 60 1 264706175 264706193 ACATCAAGCAGTCGAAGAG 58 264706133 264706152 TTCTGATCGTTCTCCTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adprhl2 ENSRNOG00000010849 ENSRNOT00000014586 2 1 1 80 5 144337595 144337613 GCTGAAGAAGGTGGGAGAG 60 144337112 144337551 GCGATTCCATTCCCTAGCT 60 NA Rattus norvegicus 81 AABR07002093.1 ENSRNOG00000048663 ENSRNOT00000074234 1 1 1 80 1 66313202 66313223 CATGTAGGCATAATAGACCCTC 58 66310537 66313162 GGTGGGTACTTGGATATCCT 58 NA Rattus norvegicus 81 Inpp5j ENSRNOG00000019361 ENSRNOT00000026293 3 1 1 80 14 83738733 83738753 GTCACATCTCTTCTACACCTG 58 83738554 83738691 ATTGACTTCTTGCAACCCG 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000087955,ENSRNOT00000048765,ENSRNOT00000091885 1 3 3 80 7 61198290 61199938 TAATGACGAAGATGCAGACAG 58 61199980 61199998 GCTAAAGTCTGGAAAGCCT 58 NA Rattus norvegicus 81 Tbc1d8 ENSRNOG00000013583 ENSRNOT00000018640 2 1 1 80 9 46113973 46113991 CAGCTACATCTGCTTTGCC 59 46112007 46113932 TTCTCAATGCTGACTACCTCTC 60 NA Rattus norvegicus 81 Rnf13 ENSRNOG00000029209 ENSRNOT00000068606 1 1 1 89 2 148037240 148037258 GAGATGAGTACGACGTGTG 58 148037309 148037793 AATGATAAGCATGGGAACAGG 59 NA Rattus norvegicus 81 Tmem29 ENSRNOG00000049908 ENSRNOT00000073957 1 1 1 86 X 20821686 20833308 CTATAGAGTCGACAAGCAGTG 58 20821620 20821638 TTAAGCTGTTCTCTGGCAC 58 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 2 1 1 91 7 144648435 144648928 AAATTCACGTTAGCACGGT 58 144648983 144649001 TAATTCCAGGACCTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639,ENSRNOT00000091418 3 2 2 80 2 27317833 27319361 TGCCTATTCGAAAGGTTTCTG 59 27317773 27317793 GTTCTGTGCAAGTAACAATCC 58 NA Rattus norvegicus 81 Ticrr ENSRNOG00000015520 ENSRNOT00000031783 1 1 1 80 1 141410115 141411393 GAAAGAAACGTGGCATCCC 60 141411435 141411455 CCACATTCAGCATCTTCAAGG 60 NA Rattus norvegicus 81 Khdrbs2 ENSRNOG00000012284 ENSRNOT00000016578 1 1 1 80 9 39860378 39860397 GAGGCTACAAGAAGAAACGG 59 39796679 39860335 AGCTCTTCTTCCTTTGCCT 59 NA Rattus norvegicus 81 Vom1r64 ENSRNOG00000048104 ENSRNOT00000074328 1 1 1 60 9 101223150 101223168 CCAACTTGTGTTCCACCTG 59 101223191 101223210 TGAACAGGAGCAAGAGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874,ENSRNOT00000080538 3 2 2 80 X 158359514 158359818 GATTTGGAAAGTGCACATCG 58 158359858 158359879 TTGGATTAGGAACAGAACTTGG 58 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 3 2 2 89 1 219441017 219441542 TCTATGATGAATGCAAGAGACG 59 219441592 219441610 CTACAATGGCTGCAATGGG 59 NA Rattus norvegicus 81 LOC102551267 ENSRNOG00000049311 ENSRNOT00000071814 1 1 1 60 9 18001155 18001173 CCAGAAGTACAGTTGGGAG 57 18001195 18001215 GTATGGTTCCCTCTTGAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445,ENSRNOT00000071516 3 2 2 80 X 159183002 159183745 AGAAAGAACAGCTACAGAAAGG 58 159182943 159182964 TTTCCTGTTCCTTCTTTCTCTG 58 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728,ENSRNOT00000090426 1 2 2 94 3 57898148 57901104 CTGTACCGAGGTCTGATCC 59 57897833 57897852 CTGGTAAATTTGTCCCGGAC 59 NA Rattus norvegicus 81 Mettl18 ENSRNOG00000025189 ENSRNOT00000003636 2 1 1 80 13 82298645 82298668 GACTTTGAGACTACTCGTAATCTC 59 82298705 82299348 TTCAATTTAGCCCTCACAGTG 59 NA InUTR Rattus norvegicus 81 Cpxm1 ENSRNOG00000021220 ENSRNOT00000028818 2 1 1 80 3 122919110 122919258 CGGCTCAATATCCAGTCAG 58 122919048 122919067 AGGCTCATTATCTTGTTGCT 57 NA Rattus norvegicus 81 Poc1a ENSRNOG00000037295 ENSRNOT00000038166 1 1 1 80 8 114986474 114986850 GGGTACCCAATGTCAAAGG 58 114986894 114986912 CATCACTGCAGAAGTGGAC 59 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742,ENSRNOT00000089895 2 2 2 80 7 137305285 137305303 ATCCCATTTACCACCTGTG 57 137305347 137308969 GATGATGAGCAGGATCCAG 58 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000031367 ENSRNOT00000045153 3 1 1 80 X 158642767 158642790 GCGCTGAATAGAAATAGTGATAGG 60 158636881 158642730 TGACTGGTCATTACAGTAGCT 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476,ENSRNOT00000087289 2 4 4 80 3 152573076 152573095 GTCTGTGAGCACCTTAACCT 60 152573138 152573680 CAGCCAATTCTTCTGGCTG 59 NA Rattus norvegicus 81 Ppp1r8 ENSRNOG00000059550 ENSRNOT00000089155 2 1 1 80 5 151020918 151026826 AGACAAGCTAATTGAGAAGCTG 59 151020859 151020877 GTAAAGTCGCACAGATCGG 59 NA Rattus norvegicus 81 Nfatc2 ENSRNOG00000012175 ENSRNOT00000065615 3 1 1 108 3 165272796 165288263 AGAAGACTACAGATGGGCAG 59 165272258 165272276 TGCTTGTTCCGATACTCGG 60 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 2 1 1 100 1 100811813 100824824 GACATCTTCCCAAGGTTGC 59 100824888 100824906 GCCTCCAAAGTTAAACCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Wfdc10 ENSRNOG00000026067 ENSRNOT00000036020 2 1 1 89 3 161121831 161122737 GATATGAAGTCCAAAGTCGCT 58 161122788 161122806 CTTGGTCCGATTCACAGTG 59 NA Rattus norvegicus 81 Rbm43 ENSRNOG00000004673 ENSRNOT00000006172 1 1 1 108 3 37437396 37440482 AAAGAAAGTTGCACAGACCA 58 37436602 37436622 GGCCATCACATAGTTGAAGAC 59 NA Rattus norvegicus 81 Slc25a32 ENSRNOG00000004403 ENSRNOT00000006029 2 1 1 83 7 77990424 77993256 GGATTATACAAGGGATTTGTCCC 59 77990363 77990384 CAACTTTAGCACTTCATATGCC 58 NA Rattus norvegicus 81 Fbxo22 ENSRNOG00000022702 ENSRNOT00000020309 1 1 1 80 8 59782616 59782637 AGCAACATGAACATCATCTTGG 60 59782674 59785103 AATATCCAGAGGGTTCTTCTCAC 60 NA Rattus norvegicus 81 LOC100361645 ENSRNOG00000031951 ENSRNOT00000051344 1 1 1 80 3 46187503 46187521 TGATGGCCCTCATGTTCTC 60 46187561 46192971 GTGAGAAAGTTTCAGTAGTACCG 59 NA Rattus norvegicus 81 Tfcp2l1 ENSRNOG00000002414 ENSRNOT00000003280 3 1 1 80 13 34615443 34639625 GACATACCTCAATCAAGGTCAG 59 34639664 34639684 GTGTTCAGATCTTGGAAGTCC 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 3 2 2 94 20 47253674 47253694 TCCTATCTTCAAGCTGAAGGA 58 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Nfe2 ENSRNOG00000036837 ENSRNOT00000055281 1 1 1 86 7 144875395 144875413 TTACCACAGCTGCCTACTG 59 144873968 144875346 ATTTAGACCCTGCAGCTCAG 60 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295,ENSRNOT00000074685 1 2 2 93 13 36154864 36154882 GTGGGCGATGTAAACACAG 59 36147914 36150852 CCTTGGAAGTTCCTTTCAGC 59 NA Rattus norvegicus 81 LOC685782 ENSRNOG00000024884 ENSRNOT00000039260 1 1 1 60 X 99250884 99250903 CTGTTCATCAGAGACACTGG 58 99250922 99250944 CAGTACATATCTGGGAAAGACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000077048,ENSRNOT00000082010 3 3 6 81 10 89216910 89217037 GTGTCAGAACTACAAACGCTG 60 89216849 89216867 CTTCAGCTCCCTCTGTAGC 60 NA Rattus norvegicus 81 Cylc2 ENSRNOG00000022406 ENSRNOT00000032726 2 1 1 83 5 66320287 66320305 ATTTCCCAAACCACCAAGG 58 66314953 66320241 TCATCAATTACAGGAGCTGG 57 NA Rattus norvegicus 81 Clcn4 ENSRNOG00000003533 ENSRNOT00000059270 2 1 1 80 X 25051505 25051523 CTGTTTGCATTTCTGGCTG 58 25051564 25057966 AGTCTTTATCTCAGGTATGCCA 59 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 2 2 2 125 10 56578181 56578291 ACGCCCATGAATATTAAGTACG 59 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Mak16 ENSRNOG00000010783 ENSRNOT00000015297 2 1 1 80 16 64735000 64736201 AACAAGACACGTATGGCGA 60 64736242 64736263 CACTTTCTGCTTCCTGTTTCTC 60 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 1 2 2 91 5 157172164 157175035 TCTTCTGCTGGACAACCTC 59 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Prkaca ENSRNOG00000005257 ENSRNOT00000041717 2 1 1 80 19 25108569 25108587 CTGAATGAGAAGCGCATCC 59 25108628 25109846 GTTTGAGTTGTCCTTGAAGGAG 60 NA Rattus norvegicus 81 Cpt1c ENSRNOG00000026163 ENSRNOT00000035908 2 1 1 80 1 100964674 100964692 CTCTTCAGCTTTCAACGTG 57 100964537 100964631 CATGGACTCTAGGTACTTGC 58 NA Rattus norvegicus 81 Scn11a ENSRNOG00000032884 ENSRNOT00000034025 2 1 1 80 8 128475170 128475188 ACCAAATCGTGAAGCACAG 59 128471317 128475127 CTTCAAATATCAGCGCTCCA 59 NA Rattus norvegicus 81 LOC100912338 ENSRNOG00000045753 ENSRNOT00000046129 3 1 1 60 2 198361066 198361085 AAAGAAAGACGGCAAGAAGC 60 198361105 198361126 GTACACATAGATGGAGTAGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025343 1 1 2 86 8 128842015 128842033 GTACAGCATCTGCAAGAGC 59 128842081 128846959 CTTCTCAATCTGGTCTTCTGG 58 NA Rattus norvegicus 81 Cst11 ENSRNOG00000004808 ENSRNOT00000006427 1 1 1 80 3 143097862 143098547 AGAAGCAGATGACGAATCAC 58 143097801 143097820 GGTTCTTCTCTGTCTTCAGG 58 NA Rattus norvegicus 81 RGD1561106 ENSRNOG00000048318 ENSRNOT00000044849 1 1 1 60 X 14733517 14733537 CGCTACTTCCTAAACAAGTCC 59 14733477 14733497 TCAGGGCCAGAAATATCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap46 ENSRNOG00000005953 ENSRNOT00000054886 1 1 1 80 1 211955320 211956086 CCCAGACACCAGAAATCAG 58 211955258 211955279 GATGCTTTCCTTTCCTTATCCT 58 NA Rattus norvegicus 81 Cmtm7 ENSRNOG00000010986 ENSRNOT00000014861 3 1 1 92 8 122820620 122820639 CTATTTAATCGGCACCCTGC 59 122816441 122820565 AGGAACCCAAAGATCGCTC 60 NA Rattus norvegicus 81 Arhgef4 ENSRNOG00000014035 ENSRNOT00000018935 3 1 1 80 9 41297226 41297247 CTTTGGAGCAGAAATTCAACAC 59 41297287 41297878 GGAAGTCTGCTTGATGTTCC 59 NA Rattus norvegicus 81 Rpl27 ENSRNOG00000020674 ENSRNOT00000028060 1 1 1 80 10 89356312 89356330 GGATGTGTTCAGAGACCCA 59 89356374 89356489 CCTGTCTTGTATCGCTCCT 59 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818,ENSRNOT00000074457 1 2 2 80 8 32317015 32318009 TCACGATGTTAAAGCTGTCTG 59 32316955 32316973 AGGTCGAAGTACCAACGAG 59 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000081138,ENSRNOT00000039696 2 2 2 80 8 115255798 115255816 GGTGGAAGGAGACAAAGAG 58 115252687 115255756 TCAGGTTTAGGTTTCTCAGTC 57 NA Rattus norvegicus 81 Ccdc43 ENSRNOG00000002748 ENSRNOT00000003685 1 1 1 86 10 90648901 90650191 GAAGAGGATGAAGCAGATGAG 58 90646751 90646769 ATTGGTGTTTCGGAACAGG 58 NA Rattus norvegicus 81 LOC100911519 ENSRNOG00000018710 ENSRNOT00000025290 3 1 1 80 1 214421849 214421867 GACCTCATGACTTCCTGCT 59 214421710 214421806 GCCATAAGCTCACATTCTGC 60 NA Rattus norvegicus 81 Nelfa ENSRNOG00000015474 ENSRNOT00000021593 2 1 1 81 14 82114291 82114310 TGCTGGATATTTCTGAGCTG 58 82114352 82114809 ACCACTTCTGTGTCTAAAGTC 58 NA Rattus norvegicus 81 Hypm ENSRNOG00000021452 ENSRNOT00000004790 3 1 1 60 X 13989526 13989544 CAAGCAGACGGAAGATCCT 60 13989567 13989586 GTACACATAGTTCACAGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr56 ENSRNOG00000051464 ENSRNOT00000087667 3 1 1 60 1 167944532 167944550 ATCTCCATTCCCTTCTGCT 58 167944573 167944592 AGAGAATCAGACTGTTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgi4 ENSRNOG00000021087 ENSRNOT00000028632 1 1 1 80 1 89493397 89493417 TCACGTCCAATACCTTCTCTG 60 89493456 89495399 TGTCCTCAATGAAGAGGTACTG 60 NA Rattus norvegicus 81 Gata1 ENSRNOG00000047663 ENSRNOT00000075082 2 1 1 88 X 15279202 15279220 TACCTGTGCAATGCTTGTG 59 15279272 15280322 TTGCTGACAATCATTCGCT 58 NA Rattus norvegicus 81 Trim43a ENSRNOG00000010699 ENSRNOT00000044521 3 1 1 81 8 96396712 96397284 AGTGGATGGACTACGTGAC 59 96397327 96397347 TCTTCTTCATCAAGGGATGGA 59 NA Rattus norvegicus 81 Gak ENSRNOG00000000048 ENSRNOT00000000064 3 1 1 80 14 2116792 2116812 CAACCATCTCCCATTATCCTG 58 2116854 2120754 TGGTGTTCCTCGTGATCTC 59 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 1 2 2 80 5 76409312 76409330 TGCCAGCATATGAAGTTGC 59 76409369 76410044 CAGTTAATGTGTCTGGAATGACTC 60 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 2 2 2 80 12 51852895 51853587 AGAGGACTGTCTTATCAAGATCAC 60 51852838 51852858 CCACATAGAGTCCTCATCAGG 60 NA Rattus norvegicus 81 Tigd4 ENSRNOG00000010741 ENSRNOT00000014409 2 1 1 60 2 183600045 183600066 TGCGGTTGATACATTACATCTC 59 183600085 183600105 GCATTTAACAATGGTCTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 1 2 2 88 9 45536282 45538227 GAAGTCATGAAGCCAACTGG 59 45536213 45536231 TTTCTGATGAGCTCCAGCC 60 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000043953,ENSRNOT00000088331 3 2 2 89 10 89168321 89168340 AAATGTCCTACCTTGCTGGT 59 89168386 89168540 CTGTAATACCTGCTAATCAAAGTCC 60 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 2 2 2 80 1 71687039 71687058 GGACAAAGGGATCTCCTCAC 60 71680853 71686997 GAACAGTTGGCTAACACCAG 59 NA Rattus norvegicus 81 Dido1 ENSRNOG00000009936 ENSRNOT00000013189 3 1 1 80 3 176175358 176175904 TCTCAGTGAGGATTTGCCA 59 176175296 176175314 AGTTTGCCAACGTAATCCC 59 NA Rattus norvegicus 81 LOC100911393 ENSRNOG00000046062 ENSRNOT00000073176 3 1 1 60 X 119162422 119162442 AGAATTCAATCACCCAGTGGA 60 119162382 119162403 CCTTCATATAAGGTTCCTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arid1a ENSRNOG00000006137 ENSRNOT00000009173 1 1 1 80 5 151946596 151947517 TTATGCACAGCAGATTCCAC 59 151946535 151946555 TGGTTATAGTACGGAGTCTGG 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076592 3 1 3 146 1 167337330 167345221 TGGTTAAGGTCACTACTTCCAG 60 167337205 167337225 TATAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 Plbd2 ENSRNOG00000001385 ENSRNOT00000001872 3 1 1 80 12 41605361 41605381 ACAAATGGCAGCTACAATGAC 60 41605423 41610179 GTAGATGAGCTCCTCGGAC 59 NA Rattus norvegicus 81 Olr101 ENSRNOG00000061381 ENSRNOT00000086124 3 1 1 60 1 168546835 168546855 TTTCCTAACTCATCGCATTGG 59 168546875 168546895 GCTTGCCAAGATGATATGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmbim4 ENSRNOG00000004312 ENSRNOT00000005694 1 1 1 80 7 64996381 64996400 CTTGATCTTTGCGTTGACTC 58 64996442 64999151 GCTTCTGACAGTGTAAATGC 58 NA Rattus norvegicus 81 Olr94 ENSRNOG00000036811 ENSRNOT00000055227 1 1 1 60 1 168470453 168470474 ATCCTTTATACTGTCTTCCGTC 58 168470414 168470432 ATGTTCCCAAGGTCTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000090019,ENSRNOT00000079823,ENSRNOT00000030043 1 3 3 86 5 154391238 154392156 TTTCTATGTGGTGCTGGGT 59 154391170 154391188 CTGATTCTGTGTTTGGCCC 59 NA Rattus norvegicus 81 Hsd17b7 ENSRNOG00000002826 ENSRNOT00000003812 3 1 1 80 13 88306172 88306191 ATTGTGCAGATGGATGTCAG 58 88304692 88306132 GTCTAATCTTTGAAACCTTCGC 58 NA Rattus norvegicus 81 LOC685789 ENSRNOG00000003531 ENSRNOT00000004683 1 1 1 80 X 22734737 22736743 GGTACACAAAGATTTGACAGTG 58 22736783 22736802 CAACACGAAAGCTGATAAGC 58 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 1 2 3 81 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294626 89294646 GATGAGACAGTACCTCTGGAG 59 NA Rattus norvegicus 81 Olr120 ENSRNOG00000049485 ENSRNOT00000046685 1 1 1 60 1 168802977 168802996 CCTTTGACTGCTACATTGCC 60 168802936 168802955 TCATTGGTTAGGATGGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbl1xr1 ENSRNOG00000011216 ENSRNOT00000015573 2 1 1 80 2 107332522 107332542 TGCACTCATCTCTATCATCCA 59 107332583 107333841 TCAAATAAGGTGCCATCCTC 58 NA Rattus norvegicus 81 Kif17 ENSRNOG00000014970 ENSRNOT00000020215 2 1 1 80 5 156663356 156663375 TAGTAACTACTTCCGCTCCA 58 156663416 156665535 GGTGAGTTGTGATAAGTGAGG 59 NA Rattus norvegicus 81 Alas2 ENSRNOG00000000167 ENSRNOT00000000180 3 1 1 80 X 23185545 23186411 CAAGACTTTCAAGACAGACCT 58 23185485 23185503 TCTGGATCCTGGAAACGAG 59 NA Rattus norvegicus 81 Eras ENSRNOG00000048396 ENSRNOT00000071835 1 1 1 60 X 15321886 15321904 GATCCAGATGACCCACCAC 60 15321926 15321946 GTAGGAATCCTGGATAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex5l ENSRNOG00000011211 ENSRNOT00000015200 2 1 1 80 2 119388576 119396176 CAACACAGCTGTGTTGACC 60 119388514 119388532 TTCTTGGCTTTGGTTTGGG 59 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 2 2 2 80 8 132030094 132030744 CCAAAGCAGATGAAGAACCA 59 132030033 132030052 ACTTCTCATCTGAGGAACGT 59 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 1 3 3 80 8 26434089 26434108 CCAACCTCCCAAATCAAGTG 59 26434149 26447686 GTCCAGATTCACCTACTACCA 59 NA Rattus norvegicus 81 Cep112 ENSRNOG00000024557 ENSRNOT00000037067 1 1 1 80 10 96854225 96871613 TGACATGAAAGAGCAGATGGA 60 96871654 96871673 AACTCCTTGGACTGCTTCTC 60 NA Rattus norvegicus 81 RGD1564839 ENSRNOG00000030278 ENSRNOT00000043590 3 1 1 60 13 53284169 53284187 AACTTACGTGCCTGTTACC 58 53284208 53284229 TTAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560784 ENSRNOG00000032522 ENSRNOT00000049864 1 1 1 60 X 14889717 14889736 GAAAGCCGCAACATAGACTG 60 14889676 14889695 GCGAATCCCTAAGTAAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snupn ENSRNOG00000005426 ENSRNOT00000007261 1 1 1 80 8 61645895 61645915 TTAAGAATTTCCCGTGTACCC 58 61645957 61647857 AGAGCAGTCCATCTACCTC 58 NA Rattus norvegicus 81 Scn4a ENSRNOG00000012134 ENSRNOT00000016841 1 1 1 80 10 94540135 94540156 ATTGATGACTTCACATTCCTCC 59 94539656 94540094 AAACTCTGTCACATACGCC 58 NA Rattus norvegicus 81 Klhl40 ENSRNOG00000019390 ENSRNOT00000026234 1 1 1 81 8 130418929 130419050 GGCAAAGACAGGAAATGTCTG 60 130419093 130419111 TCTTCATGGGTGCTAGCTC 59 NA Rattus norvegicus 81 Otol1 ENSRNOG00000021186 ENSRNOT00000035765 1 1 1 92 2 166857164 166862207 ACAACAAGGTCCTAAAGGAGAG 60 166862260 166862278 TCTCCTTTCTGGCCTTTGG 60 NA Rattus norvegicus 81 Coro1c ENSRNOG00000000697 ENSRNOT00000000886 2 1 1 80 12 48531318 48531336 GTGCTGGACATAGACTGGT 59 48531380 48543845 CTGCCAAACCATCACAGTG 60 NA Rattus norvegicus 81 Olr137 ENSRNOG00000049544 ENSRNOT00000052078 1 1 1 60 1 169153536 169153554 CCTCACTCTCACCACACTC 59 169153577 169153596 GATTTCCCGAATGTTGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 3 2 2 80 2 252292712 252292732 AACATGACGACCTTTGATCAC 59 252292771 252293309 ATTGTCTGGATCAGAACTTCCT 59 NA Rattus norvegicus 81 Socs3 ENSRNOG00000002946 ENSRNOT00000003940 3 1 1 60 10 106975444 106975462 ACCCTCCAGCATCTTTGTC 60 106975402 106975423 TCACTTTCTCATAGGAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Khdc3 ENSRNOG00000054460 ENSRNOT00000079458 3 1 1 82 8 79782133 79782293 GTGGAAATCATGTTTGGAAAGG 59 79782335 79782354 CAGACGTTCACGTGAATCAG 59 NA Rattus norvegicus 81 Rsl24d1 ENSRNOG00000052787 ENSRNOT00000091698 2 1 1 81 8 79794264 79794282 AAGAGGAACCCACGAAAGG 60 79794326 79795808 CAAATGAGTTGTCCACCGTG 60 NA Rattus norvegicus 81 RGD1562433 ENSRNOG00000036807 ENSRNOT00000055216 3 1 1 60 1 169319949 169319967 TACACCCAAGCTCAGAGAC 59 169319907 169319925 AGAGGGACTTTCTCCACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htra3 ENSRNOG00000008182 ENSRNOT00000010852 3 1 1 80 14 80262323 80262344 ATGGACTATATCCAGACAGACG 59 80262914 80264295 GATGACCTCACCATCCAGG 60 NA Rattus norvegicus 81 Taco1 ENSRNOG00000008405 ENSRNOT00000063973 1 1 1 80 10 94265600 94265619 ATTATCGAACAGTGGTCCCA 59 94267015 94267038 GCATCTTCAGTCATCATTCCC 59 NA Rattus norvegicus 81 AC132028.1 ENSRNOG00000043149 ENSRNOT00000064006 3 1 1 84 3 77921864 77921889 CTGTGGTAATTCTATGTAGTCCTG 59 77921932 77921950 ACACAGGCATCCAGTAAGG 59 NA Rattus norvegicus 81 LOC100911766 ENSRNOG00000049324 ENSRNOT00000075588 3 1 1 80 1 214033452 214034484 CCTACTGCTCACTTTCTTTGTG 60 214034524 214034543 CTGTAGGCAAAGAAGAGCAC 59 NA Rattus norvegicus 81 LOC100909818 ENSRNOG00000047479 ENSRNOT00000072996 2 1 1 60 1 169598257 169598275 TTATGGGCTCTTTGTGGTC 57 169598215 169598234 TGACAAGCCAATTAGAAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037798.1 ENSRNOG00000003342 ENSRNOT00000004451 3 1 1 65 X 31012951 31012969 AGATCAGCAAGAGGAAGCC 60 31012887 31012905 CTGGATACTGACCCAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr698 ENSRNOG00000006445 ENSRNOT00000008435 1 1 1 60 3 78235533 78235551 TTCTACTGCCATTGCTCCC 60 78235491 78235514 GGAGATGGTCTTTGTTTCATAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr114 ENSRNOG00000048293 ENSRNOT00000047399 3 1 1 60 1 168710174 168710194 CTTCCTTCAAGAGATCAGCCT 60 168710134 168710155 CAAACCGTGAATGAAGTAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp1 ENSRNOG00000012375 ENSRNOT00000016842 1 1 1 80 9 53562929 53562947 TGCTGCAGATTTCAAGACC 59 53562990 53565203 AAGCCTGGAAACTTGTTCTC 58 NA Rattus norvegicus 81 RT1-CE6 ENSRNOG00000061639 ENSRNOT00000061297 1 1 1 90 20 4675217 4675235 TCATTGGAGCTCTGGTGTG 60 4674779 4674987 CTGTCCTTGCCTAGAGCAG 60 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000013598,ENSRNOT00000077938 2 2 2 80 2 39464154 39464173 GCAGGGACTGCAATATTCTC 59 39464215 39470693 ATTTGGTTGGAGCTTCATCG 59 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000082497 3 1 3 80 20 4893919 4894064 TCACCTTTAGATGGGAGGC 59 4893857 4893876 CAATGATGGTCACAGTTCCA 58 NA Rattus norvegicus 81 Olr68 ENSRNOG00000015649 ENSRNOT00000020953 1 1 1 60 1 168137145 168137163 CCTTCCCTTCATGAACCCA 59 168137186 168137205 AACCCATATCAGAGACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgax ENSRNOG00000036703 ENSRNOT00000054983 1 1 1 80 1 199561963 199561983 GAAGGTTGTCATCTTTACCCA 58 199562025 199562203 AAGTAGGAGCCGATCTGTG 59 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000050549,ENSRNOT00000083579 2 2 2 80 16 32457628 32457646 AGCAGGTGCTATTATGGAC 57 32457688 32490247 GTATAATGAGTTCCAGCTGCT 58 NA Rattus norvegicus 81 AABR07030603.1 ENSRNOG00000050188 ENSRNOT00000074809 1 1 1 60 10 95434668 95434686 GACAATGGATGAAGTGCGA 58 95434626 95434644 GATCTTCTTGTTGGTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ace2 ENSRNOG00000031665 ENSRNOT00000080730,ENSRNOT00000049947 1 2 2 80 X 32076394 32076416 AATCTGTACCCTTTGACTACTCC 60 32072804 32076354 ATCCCAGCTCTGATTCACC 59 NA Rattus norvegicus 81 Tom1l1 ENSRNOG00000002474 ENSRNOT00000003369 1 1 1 80 10 78191100 78201211 CTCCTGAGGAAACTTTACAAGAC 59 78191042 78191063 GTCTTCATTCTCAACTACCACC 59 NA Rattus norvegicus 81 Isoc2b ENSRNOG00000016829 ENSRNOT00000022620 3 1 1 81 1 72539299 72539317 TGTCTTCCTGTCCACTAGC 59 72539358 72544932 CTTCTGAATCTCCTTGAACTGTG 60 NA Rattus norvegicus 81 Traip ENSRNOG00000030101 ENSRNOT00000052289 1 1 1 80 8 116742310 116742329 CAGGCCAAGTTAGAACTGAG 58 116742370 116742782 TAGCTTCTTTCTTAGGCTCGT 59 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 2 2 2 80 9 53704930 53706123 CTGATGAGGAAGAAGATAAGACGA 60 53706161 53706180 GGTCGATAGTTGCTATGGGA 59 NA Rattus norvegicus 81 Noc4l ENSRNOG00000037478 ENSRNOT00000056725 2 1 1 80 12 52075274 52075477 TCCACAAGCATAACCTGGAG 60 52075517 52075538 ACTTGACATGAAAGATGGATGG 59 NA Rattus norvegicus 81 AABR07055668.1 ENSRNOG00000025369 ENSRNOT00000035110 3 1 1 86 7 7574076 7574094 TGACACTCACAGTTACGCT 59 7574144 7574164 TTCTTTGCTGTGCAGAGGA 60 NA Rattus norvegicus 81 Trex1 ENSRNOG00000022540 ENSRNOT00000033719 2 1 1 70 8 117797128 117797427 CTTGTTGCCTGCTTATCGG 59 117797076 117797094 AGATGAGGGTCTGCATGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Trex1 ENSRNOG00000022540 ENSRNOT00000033719 3 1 1 74 8 117797128 117797427 CTTGTTGCCTGCTTATCGG 59 117797072 117797090 AAGAAGATGAGGGTCTGCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663,ENSRNOT00000082138 1 2 2 80 5 157921408 157922259 AGACAGAGAAGAAGTTGAAGGA 59 157922298 157922318 GATGATTGGTGAGAATGTGGT 58 NA Rattus norvegicus 81 Ppp2ca ENSRNOG00000005389 ENSRNOT00000007621 3 1 1 80 10 37542436 37542456 TGTTTATGGGAGACTATGTGG 57 37540278 37542395 GGTAACGAACCTTAAGAGCT 57 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 2 1 3 183 20 4789802 4789948 CTCTCACCTTGAGATGGGAG 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 1 2 2 81 8 129242677 129242698 AGGCAGACATCAATACAAAGTG 59 129242739 129242837 TCTGTCATCTTGGCTTTCCT 59 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 2 2 2 81 8 129241144 129241162 CTACATCTCCTTTGGGCCC 60 129241207 129241790 TCCATCCACTAAAGCCCTG 59 NA Rattus norvegicus 81 Hspa1l ENSRNOG00000047966 ENSRNOT00000074223 1 1 1 254 20 4959429 4962713 GTAGAGATTCCAGGCCTCG 59 4962931 4962949 CAATTAGACGTTTGGCGTC 57 NA DesignRelaxed, InUTR Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231,ENSRNOT00000030891 1 2 2 80 12 48279683 48282974 TCCTGAAAGCTCTGTCCTG 59 48279621 48279639 ACATTCTCAGGACGTCCAG 59 NA Rattus norvegicus 81 Sntb1 ENSRNOG00000004821 ENSRNOT00000006423 1 1 1 80 7 95553561 95668814 GCTGGAAGTGAAGTACATGAG 59 95553501 95553520 GGTGTTTCCCATCCAATCTC 59 NA Rattus norvegicus 81 Olr45 ENSRNOG00000018508 ENSRNOT00000024961 3 1 1 60 1 167748714 167748734 CATGTTTATTGTGGTGCTGGA 59 167748750 167748774 ACGTAGGATGAAGATATAAGACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689840 ENSRNOG00000031522 ENSRNOT00000043392 3 1 1 80 8 14815543 14815562 CAAAGCACTTCAGACAGACC 59 14815600 14816586 GTAGCCTTATGTAGAAGCTTAGGA 60 NA Rattus norvegicus 81 LOC100362927 ENSRNOG00000037481 ENSRNOT00000056733 1 1 1 60 12 51965561 51965584 ATCGTAGAAGTAGTAGGGAAAGTC 59 51965524 51965547 GGATATAAGATGCACATGGTATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362927 ENSRNOG00000037481 ENSRNOT00000056733 3 1 1 60 12 51965605 51965624 CATTGAGTTGATGGAGCCAC 59 51965564 51965587 TTTCCCTACTACTTCTACGATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc39 ENSRNOG00000015117 ENSRNOT00000020297 1 1 1 80 2 219603753 219603771 AGCTGAAAGAGAAGGTGAC 57 219603815 219605025 AAGAAGGGAGAGTCTTCCA 57 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000091258,ENSRNOT00000087550,ENSRNOT00000080649 2 3 5 85 20 4418834 4418951 CCCTACTGGCAGAGAACAG 60 4418998 4419018 GGCAATGAAGAGAAGGAAGAC 59 NA Rattus norvegicus 81 Olr1252 ENSRNOG00000049051 ENSRNOT00000071125 2 1 1 60 8 42365209 42365230 TGGAGGTCTTTGTTGTTATAGG 58 42365170 42365190 GAGATGAAGATGGTGATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000012342 3 1 2 82 5 154267296 154267315 GAAGGATAAGCAGGAGTTGG 58 154267360 154267521 CTGAATCTGCCAGAGACAG 58 NA Rattus norvegicus 81 Trmt13 ENSRNOG00000015140 ENSRNOT00000064484 2 1 1 80 2 219623711 219623729 CATCCAGCATTACACGACG 59 219622993 219623669 AATAGAAGCCTGCTGTTTCAG 59 NA Rattus norvegicus 81 Slc30a2 ENSRNOG00000054142 ENSRNOT00000082245 2 1 1 81 5 152569405 152569425 CTTACACAGCCTGCATATCTG 59 152569467 152569771 ATCAACATTCTGGGCAATGG 59 NA Rattus norvegicus 81 Cspg4 ENSRNOG00000017208 ENSRNOT00000023326 1 1 1 80 8 61532608 61550892 GATCTACAGCTCCTGCCTC 59 61550934 61550954 GTAAGTCTACTCTGGTCAGGG 59 NA Rattus norvegicus 81 Lppr5 ENSRNOG00000016878 ENSRNOT00000022905 3 1 1 80 2 219920088 219920108 GCAGAATATCGGAATCATTGG 57 219910771 219920048 GCATACAACCAGAAATACTGC 58 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 3 2 2 81 8 129225855 129226052 CATTTGTGGCATTTGCAGG 59 129226096 129226115 TCATTGAAGGAGGTAAGGGA 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 2 4 6 105 5 158103014 158103032 CGTAATCCAGTTTGTGCCA 59 158103101 158105126 TTTAAAGGTGGGCACACTG 58 NA Rattus norvegicus 81 Spats2l ENSRNOG00000016012 ENSRNOT00000081497,ENSRNOT00000021527 3 2 2 80 9 64821523 64834947 AAGAAGCCATGGACATCCT 59 64834989 64835009 CCATTTGACTGGCTAGATCAG 59 NA Rattus norvegicus 81 Zfp865 ENSRNOG00000016279 ENSRNOT00000021917 3 1 1 149 1 72356901 72356919 CTTAGGTACAAGATGGCCG 58 72359147 72359165 CTGGATCTCGATGAGGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 1 6 8 102 20 4363557 4363723 GGAAACTGAACACAGGAAGG 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 Lilrb4 ENSRNOG00000027811 ENSRNOT00000077186,ENSRNOT00000038898 2 2 2 80 1 73394441 73394460 AACCCACCTGATAAAGACCC 59 73394276 73394400 CCAGGATGTAGTATCCTTCCG 60 NA Rattus norvegicus 81 Man1c1 ENSRNOG00000017087 ENSRNOT00000022956 3 1 1 80 5 152812435 152812455 TACCTCATGGAGCTGAAAGAG 59 152810560 152812393 TTCTCCACTCACGTTCAGG 59 NA Rattus norvegicus 81 Id3 ENSRNOG00000026124 ENSRNOT00000035788 2 1 1 63 5 154489925 154490058 CATCTCCCGATCCAGACAG 59 154490085 154490103 AACTCCTCTTGTCCTTGGA 58 NA DesignRelaxed Rattus norvegicus 81 RGD1304554 ENSRNOG00000042925 ENSRNOT00000067297 2 1 1 101 8 37015402 37016048 GTATGCAAACTGCTTTAGCG 58 37015320 37015339 ATTCACCATCTTTGGCTGTG 59 NA Rattus norvegicus 81 Cdc14a ENSRNOG00000014515 ENSRNOT00000064735 2 1 1 80 2 219352955 219352974 GAAATCATCGCTTGGATCAG 57 219338725 219352912 TGCTTGTTTCTCTTCCAGG 58 NA Rattus norvegicus 81 Vps33b ENSRNOG00000013149 ENSRNOT00000017862 2 1 1 80 1 142076526 142076544 GAAGAGGACAGTGAAACGA 57 142076587 142076809 TGTCACAAAGTCCACATCTC 58 NA Rattus norvegicus 81 LOC100360835 ENSRNOG00000000423 ENSRNOT00000000484 1 1 1 122 20 4318129 4318254 TTTGTTAAAGGACGCCAGG 58 4318025 4318043 ATGGTAGGCAAGACCTAGC 59 NA Rattus norvegicus 81 Mast4 ENSRNOG00000010720 ENSRNOT00000061032 2 1 1 80 2 32478041 32479894 CATCAGTGATGAAATCAACTGG 58 32477982 32478001 CTGAGGAGCAAGGTAATCAG 58 NA Rattus norvegicus 81 Blm ENSRNOG00000011213 ENSRNOT00000015065 3 1 1 80 1 142306229 142306247 TTTGTTCCACCTTCTCCAG 57 142302710 142306188 ATCGAGATCCTTTAGCATACTG 58 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548,ENSRNOT00000077892 1 2 2 60 20 4489131 4489149 TTCTACAGCCCAACCTTCC 59 4489089 4489108 TAGATGGGCCCAAGTTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cplx3 ENSRNOG00000019317 ENSRNOT00000026165 1 1 1 80 8 62384499 62385723 GAGGAGAAGATGGAGCGAG 59 62384437 62384456 TTTGTCCCTGAAGTGACTCC 60 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000058102 ENSRNOT00000074529 1 1 1 77 8 40707282 40707301 GCTACTCCTCTGTCATAACC 57 40707479 40707498 TCATGCATTCAGCATGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Nanp ENSRNOG00000008307 ENSRNOT00000011315 1 1 1 80 3 146801227 146812893 GCATGTTGGAGGTAATAAAGC 58 146801167 146801188 CTTGAACTTTATCGCAGATGAC 58 NA Rattus norvegicus 81 Klkb1 ENSRNOG00000014118 ENSRNOT00000019237 1 1 1 80 16 50168514 50168532 GATCACCTATGAGGCACAG 57 50168576 50169056 TTTGTCGTACAGTCAGAGC 58 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997,ENSRNOT00000072577 1 2 2 80 2 34559329 34559347 GTGACCCTGACAGTAAACC 58 34559389 34568094 AGTCACCAATGAACCATTCAG 59 NA Rattus norvegicus 81 AABR07071258.1 ENSRNOG00000023622 ENSRNOT00000039271 2 1 1 80 8 106869070 106869090 CTTATGTCCTTGGCATTGGTG 60 106866315 106869031 CAAAGTCTATGTGGAAGAGCTG 59 NA Rattus norvegicus 81 C4a ENSRNOG00000000443 ENSRNOT00000086027 2 1 1 80 20 4506206 4506344 GAAGTGAAGAAATATGTCCTTCCC 60 4506149 4506167 GTAGCTAGGCACTGTCAGG 60 NA Rattus norvegicus 81 RGD1306215 ENSRNOG00000015294 ENSRNOT00000020806 3 1 1 89 3 2679355 2679532 GTTCTTACCAGAACTTGATCACC 60 2679288 2679306 AAACCAGGGTTGACGAGAG 60 NA Rattus norvegicus 81 F3 ENSRNOG00000011800 ENSRNOT00000015836 3 1 1 80 2 225319784 225319802 AACTAACCACAAGAGCCCA 59 225319844 225321378 ACAATGATGAGTGTTTCTCCC 58 NA Rattus norvegicus 81 Arrdc1 ENSRNOG00000007622 ENSRNOT00000010169 1 1 1 80 3 2131466 2131484 AGGATCACAAATGCAGCCT 60 2131253 2131424 CATTGGGTTGCTCGATATCTG 59 NA Rattus norvegicus 81 Rnf5 ENSRNOG00000000438 ENSRNOT00000000501 2 1 1 86 20 4367441 4368462 ACCTCTATTGTTGGCCCTG 59 4367280 4367299 TGCTTATTCCGGCTTTACAC 59 NA Rattus norvegicus 81 Mrps30 ENSRNOG00000012136 ENSRNOT00000016190 1 1 1 82 2 51045142 51046801 TATTTACTGGCTCCAAACTTGC 59 51045081 51045102 TTCCCTATTCAGTATGTCAGGT 59 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 2 2 2 80 8 132884299 132884317 TTGCAGACCTAGATGACCT 58 132882217 132884255 GAGCATCTTTGTCCCTGAG 58 NA Rattus norvegicus 81 RGD1309821 ENSRNOG00000023208 ENSRNOT00000033235 2 1 1 94 5 57878701 57878860 AGAAACAAGGACATCAGCAC 59 57878626 57878644 TTCTCCTGAAGGTTCTGGG 59 NA InUTR Rattus norvegicus 81 Nln ENSRNOG00000011561 ENSRNOT00000082755,ENSRNOT00000066925 1 2 2 80 2 34110113 34110131 GACATGATGAAGTGCGGAC 59 34100636 34110069 ATCGTGCAAAGTCAGTCTG 58 NA Rattus norvegicus 81 C1qa ENSRNOG00000012807 ENSRNOT00000017385 2 1 1 61 5 155264102 155264120 CCATCAGCAAAGGACTGGA 60 155263150 155264077 CTCCATGATGTTCCTGCCT 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Ccdc33 ENSRNOG00000008219 ENSRNOT00000058490 1 1 1 80 8 62863424 62863442 AGCCCTTAGTCAACAATCC 57 62862519 62863380 CCTTCCTGGCCTTAAACTC 58 NA Rattus norvegicus 81 RGD1306227 ENSRNOG00000017581 ENSRNOT00000046174 3 1 1 80 2 52345029 52345047 CTACCTCCAGACAGACCAG 59 52345088 52346164 GGCACAATGTTGAAGAATTCTG 59 NA Rattus norvegicus 81 Wwc2 ENSRNOG00000013248 ENSRNOT00000017966 2 1 1 80 16 47498720 47498740 GACATTCCCTACAGGGAAGAG 60 47498777 47498880 ACTCTTTGTATCGTATCTGAGTCC 60 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000051720 3 1 2 107 16 60419349 60427280 CTGTACCGGACTTCTAGCC 59 60419260 60419278 ATCTTGAAGGTGAAGCGCT 60 NA InUTR Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279,ENSRNOT00000055030 2 2 2 80 3 176851416 176851434 TGAACCAGGCTATTGGGAG 59 176851478 176851693 CATAGGCAAACCTGTGGTC 59 NA Rattus norvegicus 81 AABR07044933.1 ENSRNOG00000026813 ENSRNOT00000031053 3 1 1 60 20 27129524 27129543 CGGTTGTGATTTCTTTCCTG 57 27129565 27129584 ATTGTCTGTCCTCAACACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lin28b ENSRNOG00000025938 ENSRNOT00000034485,ENSRNOT00000064466 1 2 2 80 20 50564000 50564020 TCATCTCCATGATAAGTCGGG 59 50517995 50563961 CCATGAATAGTTTGCTTTGGTG 59 NA Rattus norvegicus 81 LOC100912012 ENSRNOG00000004540 ENSRNOT00000006055 2 1 1 83 8 132241275 132241293 TCTTCTCCTTCCTGTCCCA 60 132241338 132244550 TCACCAAATCTTTCTTGGCAG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330,ENSRNOT00000026418 1 2 2 80 16 74328466 74330900 AATAGCGGGCAGGTTAGAG 59 74328404 74328422 GACTCAGCTTCCTGTACCT 58 NA Rattus norvegicus 81 RGD1564597 ENSRNOG00000031703 ENSRNOT00000040710 3 1 1 60 8 108260941 108260964 GACCTACTAAATAAATCTGGTGGC 59 108260904 108260923 GAACTTTGCATTTGGACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 1 2 2 82 3 71863419 71864032 AGGATCCAGTGAATGAGGT 58 71863355 71863375 CACGTTATTTACAGTAGTGCG 58 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787,ENSRNOT00000057685 2 2 2 83 3 71863419 71864033 GAGGATCCAGTGAATGAGGT 59 71863355 71863376 CACGTTATTTACAGTAGTGCGA 59 NA Rattus norvegicus 81 Ccr8 ENSRNOG00000026759 ENSRNOT00000029766 2 1 1 60 8 128781939 128781957 TCCAACTTTACGACGAGCA 59 128781981 128781999 GCGTTGACTTCAAAGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283,ENSRNOT00000057078 2 2 2 83 20 49319425 49325062 CCCTGAAATGGCATTATCCA 58 49325105 49325126 CTTGAAATGTGATGTTCCAAGG 58 NA Rattus norvegicus 81 Lman1l ENSRNOG00000019355 ENSRNOT00000026192 3 1 1 82 8 62388703 62389402 TGCAAGAGATGAGGGAAGC 60 62388639 62388659 AAAGTGATGTTTAGTGCCCAC 59 NA Rattus norvegicus 81 Padi6 ENSRNOG00000037079 ENSRNOT00000055867 2 1 1 80 5 159248753 159248985 CTCATGACCAGTTGATCCCA 60 159248692 159248710 TGGGCAGGAAGATGTAAGG 59 NA Rattus norvegicus 81 Pragmin ENSRNOG00000011407 ENSRNOT00000015166 3 1 1 80 16 59713766 59716341 TTCCAAAGGTCAACTGGAG 57 59713704 59713722 TGCCGAGGTAAACTATTGG 57 NA Rattus norvegicus 81 LOC100362856 ENSRNOG00000050316 ENSRNOT00000071766 2 1 1 60 20 1098470 1098488 CTACACAGCAGTGACATCC 58 1098428 1098449 GACTTCCTTGTTCCTTAAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1668 ENSRNOG00000053746 ENSRNOT00000089844 3 1 1 60 20 322826 322848 CTCTTTGTTACTCTGCTGATCAC 60 322788 322806 GAATGATGGCGATGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000050612 ENSRNOT00000073543 1 1 1 60 20 734856 734877 CATCCTTCTCTGTCACAATTCC 59 734898 734916 ATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clic2 ENSRNOG00000000728 ENSRNOT00000000955 1 1 1 89 20 295597 304760 TTTGTGAAGGCTGGAAGTG 58 304811 304831 TTTAACTCCCTTAAGCCAGAG 57 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 1 2 2 80 16 75146071 75146089 AAGGAGGAAATGGGTCTGG 59 75146133 75147254 GTCCAGGCTCATGGTAAGG 60 NA Rattus norvegicus 81 Smtnl1 ENSRNOG00000007516 ENSRNOT00000009903 2 1 1 80 3 72211357 72211376 TTTGACTATGCAGAGCTGGA 59 72207506 72211314 GTCGGCTAGTTTCTCTGCA 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 1 2 2 80 5 156092954 156094660 CTAGACACAAGCACTCCCA 59 156092892 156092911 CTAAGAGGTAGTCCACCCTG 59 NA Rattus norvegicus 81 Defb40 ENSRNOG00000033538 ENSRNOT00000048827 3 1 1 104 16 75702396 75705335 AGATGAACTCAGGTGCTGG 59 75705401 75705421 AACAGGTGCTGATTAGAACGA 60 NA Rattus norvegicus 81 Invs ENSRNOG00000008632 ENSRNOT00000011622 2 1 1 80 5 64175141 64175980 CAGATCTACGGTTGTTCTCAG 58 64176022 64176040 ACTGAGATGAAGCACAGGA 58 NA Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 3 2 2 81 16 62026498 62056606 AAAGAATGCTTTGAACGGCA 59 62056650 62056668 CTTCGTGTTTGCCTTAGCA 59 NA Rattus norvegicus 81 Adam32 ENSRNOG00000025728 ENSRNOT00000038266 3 1 1 80 16 71960042 71960062 ATGATAGGTTTGGCAACTGTG 59 71960100 71966948 ATCTCCCACATATGAGATTCCTC 59 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615,ENSRNOT00000078862 2 2 2 80 5 101071731 101075045 CTTCAACTTAAGATAGGGAGGGA 59 101071673 101071693 CAAGTTCAAGTCCACATCCTC 59 NA Rattus norvegicus 81 AABR07049040.1 ENSRNOG00000032203 ENSRNOT00000040968 3 1 1 87 5 101429375 101429394 CCAACCTGATGAAGGTTGAC 59 101429276 101429326 TTAACCACGACACAACTCGA 60 NA Rattus norvegicus 81 Rag1 ENSRNOG00000004630 ENSRNOT00000006115 2 1 1 79 3 91217430 91217448 CATTCTAACACTCTGGCCG 58 91212807 91212825 CTCAGGGTAGATGGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ube2l6 ENSRNOG00000030467 ENSRNOT00000044319 2 1 1 80 3 72202120 72205562 CAAGGCCTATCAAGTCTTGGA 60 72205604 72205622 GCTAGTTCCAAACGCACAG 60 NA Rattus norvegicus 81 Xkr7 ENSRNOG00000009180 ENSRNOT00000012156 1 1 1 144 3 148530536 148530554 TCTGTTGGAGACCTTCCTG 59 148531671 148531689 GTAGGATGCCAGTGTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Nelfcd ENSRNOG00000047874 ENSRNOT00000073634 2 1 1 80 3 172522689 172522708 TTATAAGTTGGCTGAGGCCC 60 172523115 172523137 TCACCTTGGTAGCCATCAG 59 NA Rattus norvegicus 81 Vps36 ENSRNOG00000012654 ENSRNOT00000016995 2 1 1 80 16 74719997 74720608 TAGAGACGGTTTCCGAGAG 58 74719935 74719954 CTTTAGCCAGAAGGACAGAC 58 NA Rattus norvegicus 81 RatNP-3b ENSRNOG00000038135 ENSRNOT00000018580,ENSRNOT00000086035 2 2 2 114 16 75528650 75529175 CAAGATGCAGCTGTGAAGG 59 75528554 75528572 AACAGAGTCGGTAGATGCG 60 NA DesignRelaxed Rattus norvegicus 81 Fnta ENSRNOG00000014462 ENSRNOT00000019594 1 1 1 80 16 70846142 70846163 CCGATATCCTTAATCAGGATGC 59 70846204 70849038 CCCAAAGTCGAAACTCCTG 59 NA Rattus norvegicus 81 Defb33 ENSRNOG00000038128 ENSRNOT00000058031 2 1 1 64 16 75581227 75581246 TCCTTGTATGTCTTGCTCAG 57 75578881 75578900 CTCACACTGACGAAATTTCG 58 NA DesignNoJunction Rattus norvegicus 81 Defb4 ENSRNOG00000013939 ENSRNOT00000058029 3 1 1 110 16 75634814 75637604 GCCTCTTTCAGCCTTTACTC 59 75634723 75634741 CCACAAGTGCCAATCTGTC 59 NA Rattus norvegicus 81 Hook3 ENSRNOG00000014275 ENSRNOT00000019281 3 1 1 80 16 70779251 70780435 TATAGACCCAGACTAGAAGCAG 58 70780476 70780494 CCGAAGCTCAGAGATTTCC 58 NA Rattus norvegicus 81 Traf6 ENSRNOG00000004639 ENSRNOT00000006148 3 1 1 80 3 91265006 91266224 ATGAAGAGAAAGAGATCCACG 58 91266262 91266284 CTCTTATGAGGATTGTACCACAG 59 NA Rattus norvegicus 81 Mrps31 ENSRNOG00000011839 ENSRNOT00000015790 1 1 1 80 16 74469150 74469169 TGAGGAGATGATACAGTGGA 57 74468241 74469107 CCATCATCGTCAAGACCTG 58 NA Rattus norvegicus 81 Atp4b ENSRNOG00000018543 ENSRNOT00000025958 1 1 1 95 16 81139506 81139524 TACAGAATTGCTCAGGCCT 59 81138524 81139447 GCAGGAACTTGACAATCCT 58 NA Rattus norvegicus 81 Alg11 ENSRNOG00000012841 ENSRNOT00000017164 3 1 1 82 16 74858021 74859973 TTGGGATTGGAGTTGTCGA 59 74857957 74857975 GACGATGTCAAGCTTTGGG 59 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 1 2 2 80 3 176761064 176762250 CATGCTCAGGAAGATCATGG 59 176761003 176761023 GTGCTTCGGCAAGTATTAGAG 59 NA Rattus norvegicus 81 LOC100910977 ENSRNOG00000011397 ENSRNOT00000015144 3 1 1 60 16 54533214 54533232 AAATCAAGCCCAAGAACCT 57 54533172 54533192 TCACGGTCTATCTTATGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5hl1 ENSRNOG00000038744 ENSRNOT00000059185 3 1 1 60 16 51816612 51816632 TTGGAAATGCTCTGAAGTCCT 60 51816653 51816672 TCAGACATACTAGCCAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sla2 ENSRNOG00000020337 ENSRNOT00000027581 2 1 1 80 3 152954581 152998147 ATACAAGCAGAAAGACAGAAGG 59 152954522 152954541 TCTCAGAGATAGTCTGGCCT 59 NA Rattus norvegicus 81 Defa24 ENSRNOG00000030524 ENSRNOT00000018529 3 1 1 92 16 75345276 75345914 CAAGATGCAGTCTTAAGAGATCTG 59 75345207 75345227 GTATCTCTTGTTGCAGATCCC 59 NA Rattus norvegicus 81 Cul4a ENSRNOG00000019649 ENSRNOT00000026653 1 1 1 80 16 81740579 81740602 GAAGTTCTTGGAAGAGACTAACTG 59 81739710 81740541 AGGTATTCTGGAACCTCCCT 60 NA Rattus norvegicus 81 Il36b ENSRNOG00000043323 ENSRNOT00000067207 1 1 1 80 3 1366499 1367371 CTTTGCAGCTTAAGGATGTAGAC 60 1366441 1366461 TGCCATGGTAGAAGAGAAAGG 60 NA Rattus norvegicus 81 Cldn22 ENSRNOG00000030889 ENSRNOT00000040731 2 1 1 60 16 47534901 47534919 GATGGTCCTGGTTCCTGTC 60 47534859 47534877 CTCATCCCAGAACTCTTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbpl2 ENSRNOG00000033682 ENSRNOT00000050371 3 1 1 80 3 1110978 1113836 ATAATCCAAAGAGGTTTGCTGC 60 1110919 1110943 CTTTCCCAGAGCTAAATATAAGAGC 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962,ENSRNOT00000034141,ENSRNOT00000006634 2 3 3 80 3 51416111 51416130 AGGGAAATCGAGTCAGTCTG 59 51414127 51416072 GAATAGGGCAATCCTATTATCCC 58 NA Rattus norvegicus 81 LOC500845 ENSRNOG00000029354 ENSRNOT00000051980 1 1 1 80 16 84406380 84406400 CTGCTAGTCATCACTTTGCTG 59 84391483 84406338 TATCACAGCCTGTACCTGC 59 NA Rattus norvegicus 81 Spi1 ENSRNOG00000012172 ENSRNOT00000016306 2 1 1 80 3 79921686 79935246 CCATAGCGATCACTATTGGGA 60 79935288 79935306 TCCGTGAAGTGGTTCTCAG 59 NA Rattus norvegicus 81 Rps28 ENSRNOG00000049442 ENSRNOT00000025380 2 1 1 60 16 71593109 71593128 ATCATCCGAAACGTCAAAGG 59 71593151 71593169 CTGACTCCAACAGGGTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir147 ENSRNOG00000036445 ENSRNOT00000054556 1 1 1 60 3 114775352 114775370 AGTGGAAACACTTCTGCAC 58 114775394 114775412 GTAGCAGAAGCATTTCCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F7 ENSRNOG00000032737 ENSRNOT00000037806 1 1 1 80 16 81829551 81829646 CTATTTACAGCGATGGCGAC 59 81829490 81829511 CATAAGACTTGAGGTGATCCTG 58 NA Rattus norvegicus 81 Adam24 ENSRNOG00000038671 ENSRNOT00000042587 1 1 1 60 16 54626890 54626909 TTCAAATGCCAAATTCAGCC 58 54626849 54626870 GATCACATTCATTCTCCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam24 ENSRNOG00000038671 ENSRNOT00000042587 2 1 1 60 16 54627323 54627341 ATAGCCTTTGTGGGAACTG 57 54627281 54627300 CAAAGAGCCTATCAACTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 2 2 2 80 15 36579954 36579972 AGCTCTGCTGATAGCTTCC 59 36580015 36581518 GTAGAGGTGACAGAAACCCA 59 NA Rattus norvegicus 81 Sdccag3 ENSRNOG00000018876 ENSRNOT00000061669 3 1 3 80 3 3830536 3830927 TCAAACAGAAATGGTGAGGAC 59 3830476 3830494 TCCAGGTCATGGAAGTCAC 59 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 2 2 3 83 15 35032125 35032651 TGGAGCTGAGGAGATTATCG 59 35032697 35032715 TTCTCAGTGACGATGTCCA 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210 2 2 5 91 X 22291377 22291395 CAGTAGTTCCCTGCGAGAC 60 22291918 22292524 TAACAGACCCTTCGATGGTG 60 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 1 3 3 80 11 38044628 38044648 CCTATGATGACATCGAAGTGG 58 38044688 38045268 CAGCAATATGGTTCTGACCTG 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000084455 3 1 3 83 2 187848600 187863243 AGGTAGTCAAGCTTGAGGC 59 187848535 187848553 TGTTCTCAGCATCCACTCG 60 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843 2 2 5 80 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26444267 26444286 CATGGGTTCGTAACCATAGG 58 NA Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 1 2 2 93 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777335 32777353 CAGAAGAGGTGATGGACCC 60 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900 3 1 2 80 2 30219308 30219329 TTACAAGTTATATGGCGAGGAG 58 30218266 30219268 ATGCATTCTACTCCAGACAC 57 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 1 2 2 80 8 132668317 132668335 GTCTCTGCTGCTCATTGTG 59 132667243 132668278 CGAAGATCACTTTCAAATCTCCTC 60 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065 2 1 2 80 1 56163457 56166045 GATTCCGTAACTTCACGGC 59 56163395 56163414 TTCACTTATCTGCTGGTCCA 59 NA Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209 1 1 2 80 11 38359070 38369410 CCATCAAGAAGCATAAAGAAGG 58 38359011 38359029 TTGGGTCTTTCTGATGGTG 57 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456,ENSRNOT00000076746 3 2 2 80 2 30362244 30362986 GCTCCATTGAAACAGTGGA 58 30363030 30363048 GATGGTAGCTGGGTAAACG 58 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 3 2 2 80 1 83513496 83513712 CTGAAGAAATACAAGGGAGCC 59 83513754 83513772 GACAATGGAGCAGATGGTG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 1 2 6 80 1 76613069 76614124 CTTATCCCAAGTCAGGAACGA 60 76613009 76613029 ATTGGATCCACTTGGGATCTC 60 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000080147 1 1 3 81 14 86159497 86159515 TGAAGAAGGTGATGAGCCG 60 86158979 86159453 AAAGTCTCCGACTTCTCCTC 59 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474 1 1 2 81 4 179417753 179419038 AGGAACTGAGATCATTAGAAGGG 60 179427542 179427560 ATGGATGCTTTGGGAGGAG 60 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000078856 2 1 2 80 11 47264335 47264355 CTCTCCACCTCAGAAATACCA 59 47264395 47264416 GAATACTGGAACATAGACGCC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000087709 3 1 3 81 15 43019943 43020948 CCTACAAATATGAAGCAGATACGG 60 43020984 43021006 GTACACTTATTCAGCTCGATGAC 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 3 2 2 94 X 31130160 31130178 TTGCAAACTCTTGGAAGGC 59 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000031254 1 1 2 108 1 89106778 89106796 GAGAGGCCATGTTCCTGAG 60 89105109 89105206 GAAGAAAGAGCAGAATCTGCTC 60 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000039375 1 1 2 80 6 22257358 22266508 CCGTTTACAACTCCTAGAAAGTG 60 22257300 22257322 GATCGAGGCAATGAATTACTAGC 60 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 1 2 2 80 4 64681870 64681888 ACATCCTCTTGGTCTTCCT 58 64660470 64681826 TTCACAGCATTCTCACTCC 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 3 2 5 80 1 87656302 87656324 GCCATCAGTAATTTCACTACTGG 60 87656362 87656507 GACAGCAAATCTGGATACCAC 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 1 2 2 80 18 28856961 28856979 ACAGCCAAGTCCTACTGTG 59 28850544 28856919 GTTTGGACATTTGCAGGAGAG 60 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839 2 1 2 97 1 86971001 86971021 TGACTCCAAGAAGGCTTACAG 60 86971188 86971286 CCAGCTCCTTCTTCCATCC 60 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 1 2 2 80 1 101455556 101456354 CTGCAGAGGATGATTGCTG 59 101455494 101455512 GTCTGCAAACATGTCAGCT 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408 1 1 2 99 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224320086 224340270 CTCTTTCCAACTTAACGTGGT 59 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 3 1 3 116 4 78382322 78383622 CTATAGTTGAAGGGACTCTGTG 58 78383699 78383717 TAGTTCCTCAAAGCCATGG 57 NA InUTR Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000081920 2 1 2 160 17 9741328 9741435 CTCCCATATTGCAGAGCAG 58 9741596 9741614 GATGTAGGGATGCGATCCA 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386 3 1 3 133 4 7207005 7207023 GAGTTACTCAGTTCCAGCC 58 7205440 7206908 TCCTCTGTCTCTTCAGCAG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128 2 1 2 80 6 21988128 21988147 CAGTTGAAGATGAAGCAGCA 59 21984532 21988085 TCCACTGGTTACCTGTCAG 59 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355 2 1 2 94 16 19001397 19047177 CAACATCCGGAACATGGTG 59 19047235 19047688 TCCCTAGTCGTGTCTCCTC 60 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000088327 2 1 2 120 2 188226432 188227394 TGAGAAAGGCAGCATCTCC 60 188226330 188226350 CATCAAATCTGGCCTTGAGAG 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000071919 3 1 3 81 15 39738589 39738608 GAGAAAGCACAAGATGTCCT 58 39732052 39738546 TCACAGGTGTATGATCTCCA 58 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076380 3 1 5 135 7 115821781 115821800 GGTAGATCGACAAGAGGAGG 59 115823287 115825575 TTTGTTCAGCACTGTCAGG 58 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000067037 3 1 2 181 13 88638558 88641967 TTCTCGGACAGTTGACCAC 60 88638395 88638413 GATTCCTAAGGTGCTGGCT 60 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 1 2 2 94 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960735 18962015 CAGGAACACCTTACACGAC 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 2 3 3 85 20 9749957 9817306 AGGAAGAAAGGATACAAGACCC 60 9817352 9817370 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000018843 1 1 2 81 18 31820110 31825306 CATGAAGACTCCAGCACAC 59 31820047 31820065 TGAAGGAGAGTTCCGAGTC 59 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 1 1 1 109 6 6180546 6180566 GCTGTATCTTATCTGGACCAG 58 6180639 6180657 ATCTCTGTGACAGTGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 2 2 2 80 1 83211325 83211343 TTTCTCCAATGGGTTTGCC 59 83211387 83211572 ACACCTCAGTGTTCTTGGG 60 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000077698 3 1 3 85 2 188174883 188184544 GAGCTGTTTGAGACGTTCC 59 188184592 188184611 GATTCTGTTACACGCTCCTC 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183 2 1 4 81 6 52608436 52631087 AGTCGTTCTAGAGAAGACACAG 59 52631129 52631147 GATGTCCGGAGATTGGAGG 60 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 3 1 1 76 4 157058013 157058031 AGACTGTTGGAGCGAACTC 60 157058149 157058170 GATATTACCACAGTATGGACCG 58 NA DesignNoJunction Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000088676 3 1 2 80 1 80172750 80172792 CTACCTCAGATGAAGTCATCCTC 60 80172692 80172710 GTCGGAGTCATCACTGGAG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637 3 1 10 80 2 231280343 231280361 AACGTGGCTCTTTCTTCCA 60 231269943 231275857 GACTAGGAAACTGCTGTTGTC 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000080637,ENSRNOT00000055615 1 2 10 87 2 231232985 231233003 AGTCAACATTGAGGATGGG 57 231226955 231232934 ATTGTTGTCCTCTGACAGC 58 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000040877 1 1 2 80 18 33413761 33413813 GTAGGACCTTGGGAATCGT 59 33413699 33413719 ATCGATGCTGTAACTTGTCTG 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692 1 1 2 182 17 16242410 16242428 ATCGACATTTACCACTGCC 58 16245931 16249313 CACCACATCTTCAGCACTG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 91 10 4345459 4345477 TTAAGGACAGCAGGAACCA 59 4345529 4445729 GCAATGGTCTTACCTTCATCTC 59 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000091746 3 1 2 82 X 34658825 34661124 AGTAGAAAGTCCCACTCTCC 58 34661169 34661187 GGAACATTGTGGATTGGGT 58 NA Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 2 2 2 81 2 123271337 123271355 AGCTGGTGTGAAAGTAGCA 59 123271397 123272311 TCCACCTTCTTTCCTAACTCTC 59 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 1 2 2 80 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013123 6013902 ATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Matr3 ENSRNOG00000019875 ENSRNOT00000026949,ENSRNOT00000083993 3 2 2 80 18 28381371 28381389 AAGGCACTTTGGTTTCAGG 59 28381432 28382545 GTTAGGAATCCTCAGCACCA 60 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248 1 1 2 85 20 10438618 10438636 TCCTGTCTTCCACCATCAG 59 10438685 10440058 GTCAGATCGGACCTCAGAG 59 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000079585 1 1 2 80 18 37245787 37245805 AGGAGGACATTGATACCCG 59 37096117 37245746 TAGAGATAATGTCAGCTTCGGT 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 1 5 6 80 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550367 157550385 TGTGTATGCTCGGTGACAG 60 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000077814 1 1 2 80 18 37958015 37961816 GAAAGGGCAGATAGAGAAGC 58 37957954 37957972 AGCTCATTCTGGTCTCTGG 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000077814 3 1 2 81 18 37958015 37961816 GAAAGGGCAGATAGAGAAGC 58 37957953 37957971 CAGCTCATTCTGGTCTCTG 58 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 2 4 4 80 6 8250645 8257481 CTTGTTTACATAAGGGAAGTCG 57 8257522 8257540 CTTCATCTGAGACCTTGGG 57 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 2 2 2 80 20 5530003 5530022 CTTTCAGACACTCCCAAAGG 59 5530065 5530178 CCCTGAAATGAAACGGTCC 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 3 4 4 82 15 51927600 51936380 CCTTCAAACAAGAATGTCGGA 59 51927538 51927556 AGCAAGAGGAAGACAGTCG 59 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 1 2 2 81 2 188750424 188750442 GAATGCCGATCACTCTCAC 58 188750486 188750881 TGATGGTTGGCAATGATCTG 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889 1 2 3 107 1 140857456 140857474 CAAATGCCTGGTGACTGAG 59 140855509 140857385 GAGGTGGTCTCGAGTTCAC 60 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 2 1 1 63 18 29587420 29587438 GAATGTTCAGAGGTGCAGC 59 29585976 29585994 ACACATTCTTCTCTTGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108 2 1 2 80 10 56650363 56650383 CGTGAGTATGGACCTTGGA 59 56650705 56650723 GACAAAGTGGTAATCCCGG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 2 3 4 80 17 43537171 43537190 CTACAAGTGAGCAGTGTGAG 58 43534704 43537130 AACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000085927,ENSRNOT00000078436 3 2 2 84 6 102367207 102369305 AAGGCTTCTTAGCTGAGGA 58 102367141 102367160 TCTGCAGTCTTAGAGTAGGG 58 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000073048 2 1 2 81 9 10164921 10164941 CTGTGCTTTGGTATACAACCA 59 10164771 10164880 TGTGGTCCATGTGATATTGTC 58 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 3 2 2 176 18 32340785 32340803 TGAGGATTCTTCCCGATGG 59 32351715 32356445 CTTCATTTGGTGTCTGCGA 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000036050 1 1 2 83 5 33603195 33603213 AAAGCTTGCTGCATTCTGG 59 33603259 33603812 GCAGCTTCTGTCTGTATCTG 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000036050 3 1 2 150 5 33603128 33603147 TGGATCCAAACTTCTACAGC 58 33603259 33603812 GCAGCTTCTGTCTGTATCTG 59 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956 3 1 2 80 7 145088603 145088737 TATGCTGACTCGAGCATCG 60 145088778 145088799 GATCACTTTGATGTGTCTTCGG 60 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162 2 1 2 81 15 39838928 39838948 CCTGAAACTCATGATGAACCT 58 39838988 39847143 CACAAACACCTTAAAGACATGG 58 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 2 1 1 60 12 11734964 11734983 TTGGGTTCGACTACAGTTCC 60 11735006 11735027 AATCGCTTTCCCTTTCTTATCG 59 NA DesignNoJunction Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 1 2 2 80 5 24454644 24457632 CATTTACTTTGCCACCAACC 58 24454583 24454602 TTGAAGAAGTCAGAGCACAC 58 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 1 2 2 88 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025906 99025927 GCCGAATCTTCTCTTTAAAGTC 58 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 1 2 2 80 14 7738622 7738641 CTAGGAGTGTTTATCAGCGC 59 7737864 7738579 TATCAAACGGTCTCCAGGC 60 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 3 2 2 81 14 7738622 7738640 TAGGAGTGTTTATCAGCGC 57 7738199 7738578 GATATCAAACGGTCTCCAGG 58 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676 3 1 2 118 9 66518749 66518767 GTAGAAGAGGAGCCGACTG 59 66518848 66519560 TTCTCTGGACTAGGAACTGC 59 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654 2 1 2 84 1 189614754 189614772 CATCCCGAACCATCAATGC 59 189614820 189615881 GGTTGGCTTTCAGAGTCCT 60 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 3 3 3 80 2 158091956 158091974 AGCAGACAGAACAGTACCA 58 158083023 158091913 CACATTTCTGAACCACCTCC 59 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777 3 1 2 90 10 81755832 81772378 GCCTGAAGGATGAACTTTCTG 59 81772430 81772448 GGAATTGCTGACACATCCG 59 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000059510 1 1 2 80 17 43329481 43338395 CTCCCAGGAAGTCTCAAGG 59 43338439 43338457 CCATCTTTGCCCAAGTTCC 59 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 2 2 2 80 2 94717208 94720819 GTTTACTGGTGGGAAATGAGTC 59 94717149 94717167 AGGAGTTCTCATTTGGCCT 59 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000045628 3 1 2 80 8 111696174 111696198 ATATGAAGAGTACTTAGGAGCAGAG 60 111694756 111696136 GCTTCTAGGAGTCGTGAGG 59 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000081993 2 1 2 83 17 30705716 30706094 TTAAGAGTGAAGAGAAAGGCAG 58 30705654 30705672 AAGAAAGCCGTCTCCTCTC 59 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000084123 3 1 2 109 19 25950275 25950375 GAAGCTATAGAAAGGCTGAAGG 59 25950187 25950205 TGACTCAGGAGGAAGTTGG 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000015810 3 1 2 116 8 48721486 48721504 CTGTGTATGGGAACCCTCG 60 48721584 48722123 CCAGGATCCAGATCTTGGG 59 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000085312 3 1 2 133 1 219162341 219181527 GACAAGGCAGAATGGACTC 58 219162226 219162246 TTTGTTGTCTCTGAGGAAGTG 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000001011 2 1 9 103 20 2083572 2083647 GGACAACAGATTGGCTTGG 59 2083038 2083056 TATGCACACCACCAAACCT 60 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489 1 1 2 91 4 176811203 176811758 AACCATAGCTCACCGTGTC 60 176811130 176811148 TTGGACCAGTATCGCACTC 60 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000055540 2 1 2 88 4 176918817 176922296 GATCCTGTTCATTGGATGGG 58 176918748 176918766 ATCTCAGGTTGTGTCCAGG 59 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408,ENSRNOT00000084180 1 2 2 80 17 45510580 45514196 TCAGTATCCTGAACTGAATGCA 60 45514237 45514255 AATTGGTTGCAGGGAAAGC 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 3 2 2 80 8 48725105 48725123 AGTTCAGGCATTGAGATGC 58 48724446 48725062 GACCACAAACTTGATCCCTG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 3 2 4 80 1 267625419 267625438 TCTACAGCATGAGGTTCTGC 60 267625479 267627771 TGATGATTTCATGCCTGATGC 60 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558 3 1 2 81 8 64763800 64774605 GATTCGTAGATCAATGGGAAAGG 59 64774644 64774664 AGGCAATCGGACTATAACAGG 60 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000015963 3 1 2 81 8 64763743 64763762 CAAAGACATCAGTAGCCTGG 58 64763803 64765599 GACAGGTTTCATTGATCTACGA 58 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 3 2 2 81 16 19512855 19512874 GTGATGATGCCCTTAAAGCC 59 19512917 19515087 CCATGTTCATCCTTGCTCAG 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000029487 3 1 4 80 1 82338654 82338675 GGGACTATCAGTGTGAGATCTC 60 82331754 82338614 TCACTTCCCGTATTACGTCC 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 1 2 4 80 1 82332692 82338612 ACGTAATACCTGATCCAACAC 58 82332632 82332650 CAGCCACAGATCCAATCAC 59 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683 1 1 2 80 2 188523980 188524121 AACTACTCCCTATGCTAATCCA 58 188523921 188523939 CCTCTGCATACCACTTTCG 58 NA Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 3 2 2 80 9 65652330 65659472 GAACCAACTATGATGAAGAGGC 59 65659512 65659531 CTGTGCAATCACTGAAGGAC 59 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000088306 1 1 2 80 12 52068728 52068928 GAAAGATCCAGCTCCTTATCAG 58 52068669 52068688 CATAGTTGATCACCAGCTCC 58 NA Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 2 1 1 139 2 192288482 192288500 TCCCAATCTTTGTCCTCCT 58 192283244 192283262 CTGGACACTTTGGAGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 1 2 2 80 9 64552623 64554744 GATTCCTCGTTCTAGTATAATGCC 59 64552566 64552590 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264 3 1 2 84 4 79942665 79942684 AATGCCAGATAATGCCACAG 59 79935151 79942618 CAGAGCATGGAGCAAATGG 59 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892 1 1 2 131 1 188693805 188693823 TTGGAGCAAAGATCCAGCA 60 188689950 188693710 CATGGGATTAGTCCCACCA 59 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262 3 1 2 97 10 63326545 63332247 GCAGGAACAAGTTTGTGCT 59 63332306 63332326 GATTCCAGTGGTCTTATGCTC 59 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435 2 1 2 80 10 15630019 15630038 TTGATGACCAGGATGGTGAC 60 15633595 15637127 GAATAGCATCCGAGAACCCT 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729 2 1 5 80 13 47415479 47421228 GCAAATGGACATAGGGAAGTG 59 47415419 47415437 TCAGGAGAGCAAAGTGAGG 59 NA Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597 1 2 3 80 1 101691073 101691091 CAGAGGAGGAATTGAAGCC 58 101691134 101692358 ACTTCTCATCCTTCTGTTCC 57 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000034256 2 1 2 96 3 142781961 142781979 GATTTGGGCACATACCTCC 58 142781881 142781899 ACAGAAGTAGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410 1 1 2 98 1 37738001 37740008 TGTCCTTTCTATAAGGGCCC 59 37737922 37737940 AAGATGGAGATCCATGGGC 59 NA Rattus norvegicus 81 Akr7a2 ENSRNOG00000017780 ENSRNOT00000024063,ENSRNOT00000083629 3 2 2 92 5 157764179 157764197 TGTCCAACTATGCCTCCTG 59 157764253 157766765 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076 3 1 2 80 10 88952727 88952748 GAAATTATTCAGCATGACCAGC 59 88953722 88959742 GCCAAAGTCAAACACTTCG 58 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000078063 1 1 2 84 5 152367303 152368059 TCCGAAAGATCGTGGAGAG 59 152363749 152363767 TCTTGTGCCAGTTCTTGCT 60 NA Rattus norvegicus 81 AABR07039075.1 ENSRNOG00000032738 ENSRNOT00000048313 3 1 1 62 X 67564124 67564142 CCCAATGTAGTGGGAAGGT 59 67564332 67564351 TTCTCTTGGCCTTCTTTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Adgrl1 ENSRNOG00000029134 ENSRNOT00000045699 3 1 2 115 19 25051389 25051407 AATAACCGAACCCAGTGTG 58 25051486 25054731 TGCTCCACTTTGTAAGGGA 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861 3 1 5 83 X 64273010 64273595 GGAACTCAGCACATGTGTC 59 64272945 64272963 TACTGGCCCTGGTTTAACG 60 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792 3 1 2 80 8 123295965 123306256 TGTCAAAGAAGGATCTTGCAG 59 123295905 123295923 GCTCTTCTTCACTGAGCAC 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 2 2 2 88 20 9620295 9620313 CTTTGTGATGGACGAGCAC 59 9620365 9621853 CCATAAAGCCCTGGAAGGA 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 1 2 2 93 2 189583037 189583058 AGAGAATCAAACTGCAAGTCTG 59 189584344 189584578 AGGATAATGCCCATGGCTC 60 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000001013,ENSRNOT00000078362,ENSRNOT00000088757 3 3 3 81 20 2096797 2096815 GCCAGAGAAGAAGGTGGAG 60 2096857 2097248 AATACAGCAGCATTTCGATGAG 60 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138 3 1 3 96 2 40554291 40554310 GCGAATCAGAGAACATTCCG 60 40554369 40704835 AAGTCCTGGAAACCAGTCG 60 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201 1 1 3 82 4 118486205 118500915 GCTTGAGAAAGACCAGAACG 59 118486142 118486160 CTGGACCTGGACCTTTCTC 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 2 2 2 80 5 100935354 100935913 GTGAAGAAATATCGCGGCC 60 100935292 100935310 ACCACAGGATCTTCCAACG 60 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283 3 1 2 80 10 90256639 90257006 GGAGTACGAGGAGATTATGC 57 90256578 90256598 GTAGACTTGGTGATACCTTCC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 2 1 2 80 1 84891894 84891913 ACTAGAGCAGGAGAAAGAGC 59 84882119 84891854 TCATAACCTGTCTCCAACTCTG 60 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000033068 2 1 3 80 9 65113388 65117757 GTAAGGAAAGTTCTCCATCTGAC 59 65117797 65117815 CGAGATCATCACAGTGCAG 58 NA Rattus norvegicus 81 Lrrc7 ENSRNOG00000011980 ENSRNOT00000066024 3 1 3 80 2 264971168 264971187 AGCCATTACTTACCCAACG 58 264971105 264971123 AAGCATCACTCATTGGCAG 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000009660 3 1 3 85 6 8344425 8344443 TCGGCTAACCAAGTGTCTG 60 8337409 8344377 TCTCCTTCAGTGAGAAGCTC 59 NA Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000086979 1 1 2 80 18 36846598 36851677 CCACTTCCAGGTGTATTACCA 60 36851719 36851737 AGGTGAAGCTGCAATAGCA 60 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013514 2 1 2 80 4 175851522 175855532 ACTTCCATGCACCTAGACAG 60 175855575 175855593 CACAATGAAGCTGAGCCAC 60 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 3 2 2 80 15 46116198 46116218 GATCACTCTGTCATCATGTGG 59 46116258 46121904 CTGGACTTTGTCATTGTGTCC 60 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 1 2 2 81 7 70617610 70617710 AGAACTTCCAGTCGGTGTG 60 70617755 70617773 GTCTCTTTGCGATTAGCCG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 1 1 5 60 1 80531023 80531223 ATTCCAAAGACAGTGTCTTGC 59 80530835 80530853 TAAGTTGGGTCTGGAGTCC 58 NA DesignRelaxed Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 3 1 5 61 1 80531023 80531223 ATTCCAAAGACAGTGTCTTGC 59 80530834 80530853 CTAAGTTGGGTCTGGAGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000039953 2 1 2 81 4 10460322 10467709 CCATAAAGGCTACTTTGTGGC 60 10460261 10460279 GCAGATCAAGTCTGGATGC 59 NA Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076520,ENSRNOT00000075125 2 2 5 80 15 10272375 10272393 AGAGTGACTTGGAAGAAGC 57 10270807 10272331 ACTTAGGTCTTTCAGCAGC 58 NA Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000088995 2 1 2 81 7 70460925 70460943 TACTTTGCAACTCGTGGAC 58 70460761 70460880 GTACACTACCTGGCTTGGT 59 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000057407 3 1 2 105 14 85272231 85272701 CTGAAGGGATTGGAGACAG 57 85272770 85272788 AAGAGGTCACTTAAGCCAC 57 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000038198 3 1 2 80 1 220783722 220783742 GAGGAAAGTTTCTTGACTGCC 60 220782906 220783681 TGTAGTACTCACATGCCTGG 59 NA Rattus norvegicus 81 Thoc2 ENSRNOG00000007315 ENSRNOT00000009755,ENSRNOT00000081880 3 2 2 80 X 128171449 128171468 ATCCTTCTCCATCACATTCC 57 128165703 128169965 GGTTAATGTAGAGCTTTGCTG 57 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996 3 1 2 140 4 113953122 113953630 ATCCCATCTGCTTCGAGAG 59 113952859 113952877 ATGAGGACAGTCCAAAGCA 59 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 2 1 1 77 X 152196370 152196388 TAGAAGACCTGGAAGACCC 58 152196559 152196577 GCAGAAAGTCCACCAAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000066823 3 1 2 80 1 224937972 224938440 CTAGAGCATAAGGATGAGCCC 60 224938479 224938500 CCAAAGTTCATCTGTCTCTGTG 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000034784 3 1 4 85 14 22433568 22484546 ATGACATCCTGGGTCATCC 59 22484593 22484613 GATTCCATGATAGATGGCCTC 58 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 3 2 2 80 8 97399102 97399122 ATCTCCCATATTATCCGCGAG 59 97399162 97404690 GTACTGAGTTACCTTTGGCTG 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757 3 1 2 119 8 97277618 97277636 GAAAGTGACTCGAGCTCTC 58 97278179 97291661 GTAATGATGCTGCAGTCGA 58 NA Rattus norvegicus 81 Myo18a ENSRNOG00000033101 ENSRNOT00000043448 3 1 2 84 10 65016084 65016164 GCCCAGAATCAGCAAACTC 59 65013844 65013863 TTGATGGTATCGATGAGGGC 60 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000071977 3 1 2 88 6 42616525 42616543 AAGAGAATGGCACAGAGTG 58 42609401 42616474 GTCAGGTCAACTCCATTAGC 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 1 2 4 80 13 76298273 76335763 AAGACATCAGTAAAGGCAACTC 59 76335804 76335822 ATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257 3 1 2 80 12 11712758 11712779 GATTCCATCTTATGCTCTTCAC 57 11661000 11712718 TCCTTGCTAAACCTTTCTGG 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 3 3 3 85 7 2907679 2907936 CAAGAGCGATGAGATGAATGTG 60 2907615 2907633 CTTGGTCCTTGTTCTTGGC 59 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 1 2 2 80 1 101843999 101844017 TCTACCTGGTTACCAACGG 59 101843371 101843956 GCTGATAGAACACCTCACCA 60 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502 2 1 3 80 1 197522726 197522748 GATTAGCTGAATACTTCACTGGG 59 197518521 197522686 CTTTGACCAACCTCTCCAC 58 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000005731 2 1 2 104 6 36091061 36091079 AGAATGAGCCTGGGATGAG 59 36091146 36092244 TTTCTTGGGATCCCTGAGTG 60 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560 1 1 2 112 5 88612387 88612410 CAGTTTCGATTCTATTCTTCTGGG 60 88601664 88612318 CGATTTCGGTAGCAAGATCAG 59 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000011003 2 1 2 82 3 46601396 46621636 CGAGTGGCGTGATAAAGGA 60 46601332 46601351 GGGTCAGTACGGATTTACCT 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 3 4 4 89 1 24190586 24191685 GCTTTCATGAAACAGAGAAGGA 59 24190133 24190537 TTGAACTTCAGGGTGTTTGC 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 2 4 4 88 1 24190586 24190756 GCTTTCATGAAACAGAGAAGGA 59 24190134 24190537 TGAACTTCAGGGTGTTTGC 59 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000089126 2 1 2 84 8 65733628 65736426 TAACCACTCACTTTCAGCAG 58 65736472 65736491 GGATACTTTCTCCACATCCC 58 NA Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 3 1 1 60 18 40726968 40726986 AAATTCCTCAGACTGCTGG 57 40724725 40724743 GGGCAAAGGACTGATTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 2 2 4 99 3 112229137 112229155 TCTTTACCTGGATCCCGAG 58 112229218 112250998 ACAAATTTCCGGAGGTCTC 58 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 1 2 2 80 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940085 112940104 GATCATCGTCCAGGAAACAG 59 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 3 2 2 113 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863379 102873769 CTTCTTCTCATCCTGACGGT 59 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 1 2 2 80 5 19508455 19510173 CTACTGTGAAGGTGTGGTC 58 19508393 19508411 CAAGCTCAGCCAGTAAGTC 58 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000068190 1 1 2 93 14 110757982 110758000 CTTGGTTACTGCATGCTGC 60 110755101 110757925 TTCATCCAGCAGTGGTCTG 60 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000080364 1 1 2 80 12 18119742 18120178 TAGGCACTGGATTGGTGTC 59 18119680 18119698 TCTGAACAGCATCCAGCTC 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555 3 1 2 84 1 88698769 88699775 GCTAAGTGAGTCAGGGAGC 60 88698703 88698721 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000065011 3 1 2 80 1 88725221 88725241 CAATATGAAGCACATCGTGTC 58 88724388 88725181 ACCACAATGTCTTTCTTCCAG 59 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000003249 2 1 2 86 13 103284208 103287721 TTACAACTACCAGGCAGGA 58 103287771 103287789 TTCAGCTGAAACCCAAAGG 58 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000012095 1 1 3 190 13 52628707 52631324 TCCAGAGGAAATCTAAGATCACTG 60 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000020414 1 1 2 80 9 78332807 78341855 CCTCTATAAAGCATGAAGCCTG 59 78332748 78332766 TGTTCACCAAGGCATTGTG 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000065483 1 1 3 80 18 57755780 57780269 ACTCATGTGCTAAGGACCA 58 57780312 57780331 TCAATGCTGACAGGAATAGC 58 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000068328 1 1 2 80 3 162539858 162546010 AGTAAGGATCAGTCAGAGCT 58 162539797 162539816 TACAACATCAACAGGGTCTG 58 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560 3 1 2 195 1 101049524 101049545 TTTGGTATCTGCATTATCGACG 59 101047201 101047550 CTTCTGAGGCTGGAGTAAGG 60 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 1 2 2 80 19 49989892 49989911 CTGGTTCCAGCTCTACAGTC 60 49989953 49993124 ATGAGGATATGCACCATGCT 59 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000005637 1 1 2 80 6 54549982 54550004 GTTAGAAGCAGTCAGAGATAAGG 59 54550043 54554511 TGCATATAATCATCACCGGC 58 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 3 2 2 80 12 1686675 1687345 TTCTTCCGACATGTGGTCC 60 1686613 1686632 TTAGACAGGCCTTGGTAAGG 59 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571 3 1 3 128 8 71050808 71050826 TGGAGCTGGAAACCATCTG 60 71048930 71050413 CATTCCAAACGAGTCCACG 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 2 3 3 109 20 27176418 27216222 GCAACATCGATACATTGAACTC 58 27216287 27216498 CTCCTTGATTATCCATTCCATCTC 59 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 1 2 2 87 3 111023755 111036876 AACTCTTCCAGGGTCAAGC 60 111023686 111023704 TGAGTCCTTTGCTCGTCTG 60 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 2 1 4 134 5 78378403 78378421 ATTCTTTAGCAGTCTGCGG 58 78373769 78373787 GAAAGTAGCCACTGTGCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617 2 1 2 81 3 9448140 9448159 GATCTGCTTGAAGTTGGTGG 59 9434568 9448096 CTGCAGGGCTTCTTCTAGG 60 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000009975 1 1 2 81 8 48413175 48413193 CTGTGGGAGAAGAACAAGG 58 48413235 48426005 CACTCTTTGAATTCATGGTGTC 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 3 2 4 81 6 99203186 99203207 TATGCATCTGGGTATCATTACG 58 99184559 99203144 TCCTGGATCCTTGAATGCT 58 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000031328 1 1 2 119 3 177226653 177227227 TGTATGTCATCCTCAGCTGG 59 177229091 177229109 CAAGACCAGGGTATCAGCC 60 NA Rattus norvegicus 81 Ggps1 ENSRNOG00000016767 ENSRNOT00000022483,ENSRNOT00000080101 2 2 3 116 17 53963268 53965584 CAATTACCAGGTAAACAGGTGAG 60 53966398 53966419 GGCATTATGCAACATTTCAGTC 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000084445,ENSRNOT00000015158 1 2 3 80 19 49462516 49462536 TGCAGAGCATAAACTTGAAGC 60 49462578 49465010 GACTTGCACACTTGTCCTC 59 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000013400 2 1 3 80 3 57832771 57840100 GGGATCTAGACGAGGACCT 60 57840142 57840162 TATGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243 2 2 3 84 3 57837672 57840094 AGATTCCGATTTGGGACGA 59 57840142 57840160 TGTGACGATTTCTCGAGGG 60 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000012622 1 1 3 105 4 99808013 99808033 CAGCCTTACAGATACTACGTG 58 99804389 99807263 ATAGAGCTACCTGCTCGTG 59 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 1 2 2 80 17 66244908 66244927 TCTGTGAAGACCTCATCTGG 59 66243005 66244865 CTCCTTTGCCATGAGTCTG 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 1 5 5 81 1 257590070 257592413 TCTCTACATCTTTCAGAAGGGTG 60 257592449 257592472 GTCAGGTCTGTAACATGTATATGC 60 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555 2 1 2 91 1 251203319 251203338 CGCTCAAAGGCTTTATGAGG 59 251207725 251213373 GATGACTCCATCACGGAGG 60 NA Rattus norvegicus 81 Eif2ak2 ENSRNOG00000048315 ENSRNOT00000089185,ENSRNOT00000072810 2 2 2 111 6 1454449 1454467 CACCAGGTTTCTACGTGGA 59 1452779 1454377 AATGTAAACCTTCTGTCGTGTG 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000080605 2 1 2 199 1 197909351 197909370 CATGTCCAAACTGGAGTCAC 59 197908968 197909189 CCCACCCTACATACTTGGG 59 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371 2 1 3 81 1 150504411 150504431 ACTCAGACAATGATGGAAAGG 58 150504473 150505213 ACAAGGTCTATATGCCATGC 58 NA Rattus norvegicus 81 Vom2r81 ENSRNOG00000033507 ENSRNOT00000085371,ENSRNOT00000047771 1 2 3 106 1 150492435 150503000 TAGACAAGCAGGTGACACG 60 150503070 150503088 TAGCAGGGAAATGTTGGGT 59 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873 3 1 2 89 16 2890640 2984453 GCAGTCTTGACATAAGTGAACC 60 2984503 2984521 TCTTCACAGGTGGGATGAG 59 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000080410 2 1 2 124 4 179305720 179339625 TGAAGGACTGCAGTAATGGA 59 179298020 179305633 ATCTTTGGCCCTAAACGTC 58 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000033633 1 1 2 80 1 75468711 75470737 GATCCATTTGAGACCATCAGG 59 75470777 75470797 CTGATCTTCACTCACTTCAGG 58 NA Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 2 2 2 80 7 35091080 35094605 ATGACACCAGATAAGGCTGAG 60 35094647 35094665 GCCGAGATTCGCTAATGAC 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 1 5 8 82 20 1963408 1966088 AAGTGGATTGGAGGGTCTC 59 1963344 1963367 GAGATAAAGAGTTTCTGAGACAGG 59 NA Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000037655,ENSRNOT00000074608 1 2 2 72 13 91954368 91954386 TGCAAAGGCTCTTGAAGAG 58 91959732 91959750 CTGATGGCTTCCTGTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527 1 1 2 80 3 8915121 8919281 TCCCTATGAGTGGCTTGTG 59 8915059 8915079 CTTCTGACACCTTCATCAGTG 59 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527 3 1 2 81 3 8915121 8919281 TCCCTATGAGTGGCTTGTG 59 8915058 8915077 GCTTCTGACACCTTCATCAG 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 3 2 2 80 14 45848169 45848189 GAAATCTCTGCTGTCAGAGAC 59 45844261 45848129 CTTACTGGTAGGAAGAACAGC 58 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000049482 2 1 2 86 X 116764986 116765154 GGAAGAGAATAATGTGATGAGACAC 60 116758282 116758302 GAGTGGCTAATGACTGTTGTG 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 1 4 4 80 1 262914457 262914475 CAAGTACACATACCCTGCC 58 262914518 262914660 TTGTTCCTGTCCATCTTCTG 58 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 3 2 2 80 10 65451252 65451346 AAGAAGGATCTGAGTACTCCT 57 65451387 65451406 CTCAGCCTTAATCTCTTGGG 58 NA Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 1 2 2 81 10 104997971 104997989 CACCATTTCCCTATCACCG 58 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490 2 1 2 80 4 116459632 116505500 AGAATGTGAACAGTTTGCCAG 60 116459570 116459588 CTCAAGTCGATGAAGGCCA 60 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000073798 2 1 2 110 1 99449363 99455727 AAACTTGTCAGGATGGGCA 60 99455801 99455819 TTAGGATGGCCAATCCCAC 60 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000022032 1 1 2 127 8 49697045 49697667 TAGTGCAGCTGAGAAGGAG 59 49697862 49698661 ACCTGCGACTTAGGATGAG 59 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000066549 1 1 2 90 5 151114887 151116528 GACACTTGGTTGTTAAGTGTG 58 151113338 151113356 TTCTGAGCACACTTCTTGC 58 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000003946 1 1 2 80 X 70447509 70447732 AGATTGCAGTTATCCAGATCAC 58 70447773 70447791 TGAACTCCCGAATGAACAC 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164 2 1 4 86 1 265552643 265573060 TATGACCAGCTTACGGACAG 59 265552576 265552594 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000044195 2 1 4 82 1 265553269 265554219 CAGTGAAACATTAGCTGCC 57 265552626 265552644 CAAACTCATCCTCTACGCT 57 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 3 2 2 80 12 18699361 18701987 GAGTCTCACCAAGGTTTAACTG 59 18702028 18702046 GCTAGTGGTCTCATAGCCG 60 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 2 2 2 81 19 39070939 39071876 TTGGAGGAGATGTCCAAATCC 60 39071919 39071937 TTGAAGGCCATCCAGTACC 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613 2 1 3 85 7 143491855 143492500 AGAAGCAGAACACCAACCT 59 143491788 143491807 GAATTTGGCATCTGCATCCT 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613 3 1 3 86 7 143491856 143492501 AAGAAGCAGAACACCAACC 58 143491788 143491806 GAATTTGGCATCTGCATCC 57 NA Rattus norvegicus 81 Tubb2a ENSRNOG00000017558 ENSRNOT00000023611,ENSRNOT00000086264 3 2 2 91 17 31495003 31495774 CAACTTTGTGTTCGGTCAGAG 60 31495827 31495845 CATCCAGGACAGAGTCCAC 60 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 2 2 2 80 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452656 243453747 CTTCAACAGGATCTTTATCTCCTG 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000085650 3 1 3 83 7 104700051 104700069 CTACGAGCACAGATTTGCC 59 104681974 104700004 CCACATCGTTACCTTTCCC 58 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079524 1 1 3 98 7 104741536 104741554 TTAACTGCACTCCGAGACC 59 104734581 104741475 CTGAGAGTCACTGTTAGCCC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000038132 3 1 2 82 9 65943463 65943481 GAAACAGCGGGAATTCTGG 59 65931117 65943421 CGACAAATTCCTCTTTAGATCGG 60 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 2 2 2 80 6 55482108 55484780 AATTGTGTTTGTGGACCCT 58 55484824 55484842 GGTTCGTAAGCGTAGAGAC 58 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000067393 3 1 2 99 14 115443076 115443096 ATTGGAAGAGACCTCCAGC 59 115445938 115445958 TGGGTTAGACTTGGAACAGAG 60 NA Rattus norvegicus 81 Dock11 ENSRNOG00000013321 ENSRNOT00000032275,ENSRNOT00000080517 2 2 2 80 X 122626420 122626440 AGATACACAGCTATCTCGGTC 59 122626482 122628074 TTGCTGGTTCTTGTGTTGG 59 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 3 1 1 60 5 169507783 169507803 AAGATGGAATCATGGATGCTG 59 169510108 169510126 TTCACCTTGATCCTCTCCT 57 NA DesignNoJunction Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000004972 2 1 5 80 X 71310805 71310825 CACTACTTTCTCCAAGAAGCC 59 71310514 71310534 ACAACTGAATCGGTGTTCC 58 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000068174 2 1 2 81 17 68487270 68489943 CTTCCTCTTACCAGAGAAAGG 58 68489984 68490004 CTGATGCTTCATTTGGATCTC 57 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071 2 1 2 97 3 44483855 44483873 GATGATGGCTCTCCCTTCC 60 44464952 44467078 GCTCCTCATCTAAGGTACTGG 60 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000006963 2 1 2 125 3 44464950 44483850 GTATGGAAGATGAGGAGCCC 60 44464844 44464862 CATCATTGACGCTCAGGGA 60 NA Rattus norvegicus 81 Hsp90b1 ENSRNOG00000026963 ENSRNOT00000029435,ENSRNOT00000079731 2 2 2 80 7 27233712 27233899 TGGAGTAGCAAGACTGAGAC 59 27233651 27233671 ATCATCAGCTTCCTCCTTCTC 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531 2 1 3 83 5 173264690 173264708 GATGTCTTTGTGCGGTTCC 60 173264754 173265130 AGGTAAAGGGATCTCCAGTG 59 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000041859,ENSRNOT00000085808 1 3 3 80 8 100043153 100043752 AAATATAGTCGAGCAGCCCT 59 100043793 100043813 TCTTCTACCAACTCGTCACAG 60 NA Rattus norvegicus 81 Plod2 ENSRNOG00000030183 ENSRNOT00000056704,ENSRNOT00000085808 3 2 3 93 8 100038919 100038939 GATCAGAGATGAGTGAAAGGA 57 100038992 100040214 CTTTGTAAGGTCATGTCTCGA 58 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 1 2 2 80 6 80092386 80092406 CTGTACCACAAGGAAAGAGAC 58 80086866 80092344 GGAACGTACACTCAAGCAG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000077505 2 1 9 96 4 14071768 14071786 ATTATTGGTGCTGTCCTGG 58 14071846 14076150 CTTCAAGGACAACTTCCCT 57 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000091249,ENSRNOT00000008319 3 4 9 96 4 14187110 14188063 TAAATGAGACTGGGACCATCG 60 14188121 14188139 AAGACCATCTCAACCAGGC 60 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034075 1 1 2 132 18 61788784 61788804 TGTGCTGTACGTGCTATCC 60 61787150 61787168 GTGTTGACGCAGGTATGTG 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000044408 2 2 6 80 4 154560371 154560392 TCATTACCATACATTCCTGGGA 59 154560432 154560603 ATATCTCAGCGTGGTCTGAG 59 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000017383 2 1 2 73 15 2966168 2966187 CGAGAAGTATCTGAGAAGCC 58 2813614 2813634 TGTACATCATGTTACTGTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc176 ENSRNOG00000011376 ENSRNOT00000063900 3 1 2 136 6 108141692 108141711 CACTCCTGCCTTATACACCA 59 108144272 108145815 GACTGTATTTCCTGGCAGC 59 NA InUTR Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900 3 1 3 81 X 70322903 70322923 TGTCCAAAGGACTAGAACTCC 59 70322964 70323332 TCCAAATCTTCATTTCGGCTG 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000086036 2 1 3 80 10 65587049 65587753 CAGAATGCTTCTGGACAACTG 60 65587792 65587813 TATCCGACAACTCCTTCTTCTG 60 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 1 2 2 80 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066376 117066587 CACATGAAGCTATAACTACCGC 59 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000055034 1 1 2 96 1 196878870 196882161 CCCATGTGGATCTCCTTCC 60 196878792 196878810 ATGAGTCATCAGCAGCTGG 60 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000081767 1 1 2 80 1 178157414 178191954 CCTACATTTCTAACTGGCACTG 59 178157355 178157373 ACTAGCACCATGCAGACTC 60 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 3 2 4 96 13 79042690 79042708 AGGCAAATTTCTGGACGTG 59 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000013353 1 1 2 99 7 117136838 117140135 TAGCTCTCCAGGTCAATGG 59 117136757 117136775 TTCCATTTGTCTCCTGCTG 58 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000049297 2 1 3 95 3 2528967 2528985 ACATCATCCTGCTGGTCAG 60 2526083 2528908 CCTTCTCTGCCTTGGACTC 60 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000089292 1 1 2 82 4 31534228 31534246 CTCAGCTTTGTGGATACGC 59 31534289 31537261 GATCCCATTTGTAAAGATTGGC 58 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346 1 1 4 80 17 72236231 72237360 CAATATGGCTTGCTTGGGAC 60 72237401 72237421 GATTAGACCCATAAGCCTCCA 59 NA Rattus norvegicus 81 LOC687399 ENSRNOG00000045541 ENSRNOT00000079969,ENSRNOT00000082929,ENSRNOT00000071332 2 3 3 83 19 49510706 49510724 GAGTTCACCATCAGCACTG 59 49509311 49509330 CTTCTTTGACCAGATGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam127b ENSRNOG00000045535 ENSRNOT00000072066 2 1 2 60 X 73617085 73617106 ACATATTTGGACACTGTACTGG 58 73617126 73617145 TGTTCATTAGGTGACAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 3 2 2 90 19 52525004 52529237 GTCTTCAAAGGTGTACCACTG 59 52529289 52529307 CACATCACAGAAGAGGCCA 60 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 2 2 2 82 2 235852556 235852653 AAACTAGGCTGTCTCGAACC 60 235852493 235852511 ACATGCGGATTTAGGTGCT 60 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000080352 1 1 2 80 1 48539555 48543148 CCAGATGCTTACCAGAACC 58 48539493 48539513 AATCAGAAATGTCTCCCACAG 58 NA Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957 3 1 2 93 5 172303393 172303505 TTAAGTACAGGGTGCTGGG 59 172303562 172303580 CGATTCATAGGGTGCATGG 59 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 1 2 2 80 4 9982241 9990348 GTTCCAAAGAGGAGCTTGAC 59 9990390 9990409 CTCTCACTCCAGCTTCTTCC 60 NA Rattus norvegicus 81 Lgals3 ENSRNOG00000010645 ENSRNOT00000082304,ENSRNOT00000014216,ENSRNOT00000082675 1 3 3 80 15 24161528 24164288 CAACGCAAACAGTATCACTC 58 24164331 24164349 TTGTTCTCATTGAAGCGGG 59 NA Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510 2 1 2 167 18 59069647 59069666 GATGGCATTGTTCCTCTTCG 59 59059596 59067809 GCCAACTACTCGTTTGAAGTC 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 2 2 3 92 10 13306214 13306344 AGAGCCCAGAATATTCTGGG 59 13306399 13306417 TAAGAATATCCGCAGGCCC 59 NA Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 1 2 2 80 1 191911790 191911809 AGCTGGATGATATTCCTCCC 59 191909407 191911747 AGGTGGCTATGATCCTGAC 59 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 1 2 4 60 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 2 2 2 81 10 43749039 43751495 GAAACTACACAGCGATGCC 59 43751540 43751558 GTGGATGACAAGGTTGCTG 59 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000064050 1 1 4 84 1 215349782 215349800 CAGGATGTGGGTCTTCCTG 60 215329876 215329894 GAGGAACAGCAAGGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 2 2 2 103 4 117597679 117600449 ATGCCAATGTGATTGTCGA 58 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Tbc1d31 ENSRNOG00000006103 ENSRNOT00000086792,ENSRNOT00000064264 1 2 2 80 7 97802921 97802939 AAGTACCAATTGCCAGGTC 58 97802983 97806062 CAAGATTCGGCCATCTCTG 58 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000046771 3 1 3 159 14 17549423 17551322 GATGTGAAACTCGCTAGGT 57 17551444 17552988 CAGCATTGGTATCCTGTACC 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000058007 2 1 4 96 8 70172088 70172106 CAGAAAGAGAAAGGCCGTG 59 70172166 70178257 TTCCACAAGTGCCTGAGAG 60 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000081109,ENSRNOT00000089775 2 2 4 82 12 14502270 14505257 CCAAGGTTACAAGGTTTACTACTG 60 14502211 14502229 CAGGCTCAGGGAGAAAGAG 60 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000012161,ENSRNOT00000083743 3 2 2 80 3 82610412 82611683 AAAGCTGTCATCAAGGTAACC 59 82610352 82610370 CTGGTCTAGTGAGAGTCCG 59 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 2 2 2 80 8 52807928 52807949 GGCAGAGTATGAATTTCTGTCC 59 52806560 52807887 GCATGAACTGAGTTCCCTG 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 3 3 4 82 18 6777414 6777432 ACTGATGTTACTGGTTCCG 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 1 2 2 80 12 18161176 18161196 CTGAGCTGATCTTCAATTTGG 57 18161238 18163389 TTTGGAAATCTGGGATGCT 57 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 3 2 2 80 12 18161176 18161197 CTGAGCTGATCTTCAATTTGGA 59 18161237 18163389 TTTGGAAATCTGGGATGCTC 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 3 2 4 104 5 152685882 152685900 TGGCAGAGGAGAAACTGAC 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484 2 1 2 104 3 94636352 94636371 TATCAGCTAGGCATGTAGGC 59 94634596 94636285 CAAAGTCCAGGGAGTTTGG 58 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361 1 1 2 80 2 179589765 179591412 CCTAAAGGATCCTCATTAAGAACC 59 179589708 179589727 TTTCAGCTTGTCTAAGACGC 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000080083 1 1 2 80 10 46992936 46992954 AATTCAATTCCCAGCACCC 58 46992789 46992831 CCCTCCTCTGTAACCTATCTG 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311 3 1 2 99 1 104149447 104149466 CATAAGACCTGCTTTCGCTG 59 104147494 104149385 TGGCATAGCAAACTTTGCA 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342 3 1 2 81 4 22619753 22619773 CCTTTGGATATGTCAACCTGG 59 22576782 22619713 AACATATCCCTGTAAACAACCC 59 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 2 2 2 84 1 2005394 2005615 TCCCAGATACCTTCACTCG 58 2005328 2005349 CTTTGGTTAAGCAGTCAATGTC 58 NA Rattus norvegicus 81 Jph3 ENSRNOG00000018784 ENSRNOT00000025392 1 1 1 60 19 54607625 54607643 GATGAGCTCAAGTCCAGCA 60 54612062 54612080 TGAGCAGGATCACCATGAC 60 NA DesignNoJunction Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000015775 2 1 2 88 3 94356947 94357461 CAGAACAGGAGTAATTCATTGC 58 94356880 94356898 TCCTCAACTTCTTTCCCAC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000031946 2 1 3 80 7 27289981 27289999 CTCCAAGTACGTGATGGAC 58 27290042 27292015 TTTCCAGAAGCCAACATGAG 59 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679 3 1 2 88 18 73585359 73585377 CAACAGGCCAATTGGACTG 59 73585428 73603598 AATTCGAAGTACCTGGAGCT 59 NA Rattus norvegicus 81 Rpl17 ENSRNOG00000018680 ENSRNOT00000039203 1 1 2 80 18 70972772 70975405 GAAATTGAAGAAACGGGCTG 58 70975447 70975466 GGATTTGAACTCAGGACCTC 58 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 3 4 4 78 2 250224581 250224600 AAGGCAACGTGTATCATCTC 58 250224164 250224182 TAGTGAAACCGATCTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000024162 3 1 6 81 17 77185136 77189004 GAGATCAGTTACAGGAAGGAGAG 60 77189045 77189063 ATGGAGTCTGTCCTTGTGG 59 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000091978 3 1 2 83 10 85994739 85994757 TAAGACATGCAAGGTCAGC 58 85994525 85994693 AAAGATGTGGATGTCTTGCC 59 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967 1 1 3 92 13 48071364 48071382 CACAGATCCGAAAGACTGC 59 48068529 48071311 CTTCAATATCCTGTGCAATGAC 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253 1 1 2 80 3 114010852 114010870 CTCCTCTCAAATGCCACAC 59 114006222 114010810 CAAACTCGAAGTGCTATGGAC 59 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000027677 1 1 2 80 1 82099605 82099623 CAATGCCATTCTCATCCCT 58 82097909 82099563 TCAGTTAAAGCTTGTGAGGAC 58 NA Rattus norvegicus 81 Hnrnpa2b1 ENSRNOG00000011175 ENSRNOT00000015152,ENSRNOT00000015325 3 2 2 80 4 81239360 81239379 ATGGATATGGAAGTGGACGT 59 81238324 81239320 TTCCACTTCCATAATTTCCTCC 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239 2 1 2 108 18 54108793 54118140 CCTTGTCTACTCACAGGGAG 59 54118211 54118229 CACTGAAGACATGGATGCG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415 1 3 4 80 1 154447406 154447426 GCCAACCTTAATATACAGCCA 58 154447465 154457085 ATAAACTGTATCTGTGCTCCTG 58 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415 2 3 4 80 1 154447405 154447425 AGCCAACCTTAATATACAGCC 58 154447465 154457084 TAAACTGTATCTGTGCTCCTG 58 NA Rattus norvegicus 81 Slc12a9 ENSRNOG00000048487 ENSRNOT00000071325 2 1 2 182 12 22440511 22441241 GCTTCACTTGTGACAGAGC 59 22441387 22441514 AGATGACACCGAAGAGGTC 59 NA Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000066546 2 1 2 81 15 18779494 18783408 CAGTCATGGTTACGGAAGAG 58 18779432 18779451 GGAATCACCAAGTCAAAGGG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 3 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930858 50930878 TTTCAGAAGCTTCTCTGTGGT 60 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 2 2 2 80 9 79988099 79989912 ACTACCTCTACAAGGACCCA 59 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 Ppip5k1 ENSRNOG00000014436 ENSRNOT00000065285 1 1 3 80 3 113295056 113295074 GGTGTGAAAGGAGTTGAGG 58 113294852 113295013 TTTCATCTCCTCGTTCTCAG 57 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 2 2 2 80 13 102842706 102842727 GTCTTTGATTACTTAGTTGCCC 58 102836773 102842666 TACAGCAGATACAATCTGCC 58 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028 1 1 2 86 12 25497181 25498332 CAACACTATGTGTACATGTTCC 58 25498379 25498397 GAACTCGTAGATCTCGGTG 57 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 2 2 2 81 6 1571713 1573914 GTTACTTTCAATGGAGAGCCT 58 1571652 1571673 CACTGTTCACATCATTACTGTC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000006311 3 1 10 81 7 117254547 117254565 TGGGTAGCAAGAGAACCAG 59 117253870 117254503 TCTCGTTCATCTTTCTTGCC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642,ENSRNOT00000091285,ENSRNOT00000091840,ENSRNOT00000083429,ENSRNOT00000086550,ENSRNOT00000081021,ENSRNOT00000006311 2 7 10 81 7 117249347 117249365 GTGAGCAAGCTACAGATGG 58 117248583 117249302 GAATATCCTGCGACTGCAG 59 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 2 2 2 80 20 29365565 29366420 AGTTTGAGCAGGTTCAAAGC 59 29366463 29366481 TGTTCCCAGTAGTTGGACG 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000089142 1 1 3 80 9 90898239 90898259 CGCTTATCCAGTCTTCTACTC 58 90898301 90901846 TTTGTCTTCTCACACTGCG 58 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 3 2 2 84 14 106220073 106232405 CGGAAGATTCGATTCAACCC 59 106220008 106220027 ACCACCAGTTTGTTCAACAC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324 3 1 2 80 6 111342127 111342146 ATCATTGAGTCCAGAGCCAG 60 111339235 111342088 ATCTATCTCCTTCAAAGCCTCTC 60 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000031988 2 1 5 145 8 73164585 73164610 AACTATGTAGAGTCAGTTTCCC 57 73161435 73161453 GCCAACATTGAAAGTCTCG 57 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 3 5 5 80 8 73059912 73059931 CCATTATGTTTGCAACAGCT 57 73058136 73059870 TCTTCAGAATGTTCTCCCTG 57 NA Rattus norvegicus 81 Cd74 ENSRNOG00000018735 ENSRNOT00000025344 3 1 2 90 18 56078554 56078572 CTGGATGAAACAGTGGCTG 59 56078626 56080107 GTCCAGTGGCTCTTTAGGT 59 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944 3 1 2 101 8 53736722 53736741 AAATCTACATCGTCCTCCGG 59 53736805 53737777 TACAGTTGCCCTTGAGTGG 60 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000087920 2 1 2 91 1 102874793 102874813 AGAGTAATTTGGAACGGTTCC 58 102874866 102876983 GTGAGTCACCAGGTTTGTG 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000078500 2 1 2 81 1 143676118 143676136 TTTGTGCTCTCCCTCTCAG 59 143676180 143679889 CAACAATGGTCCAGGAATCG 59 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625 2 1 2 80 16 2361178 2363369 GAGGTTGAACAGACATTTCAGG 60 2361119 2361142 CCAATCATCCTGATATCTGTATGC 59 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000088884 3 1 2 95 13 90063457 90063476 TGACACAATCCCTTACACAG 58 90061288 90062588 GGACTCTTCACCACTTTGG 58 NA Rattus norvegicus 81 Ccdc154 ENSRNOG00000030541 ENSRNOT00000079543 2 1 2 80 10 14527318 14527336 TGTGCAGCTTCTGAAAGAG 58 14527379 14527537 TTTATCATTTGCTTCGTGGC 58 NA Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183 3 2 3 86 5 78565302 78565321 CAAATCGCAGTCCAAGATGG 60 78565370 78566346 TCCAGGTTTACCTCCTTGC 59 NA Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000028801 1 1 2 80 2 198704065 198704084 GAAGAGGAAGAGGAGAAGGA 58 198703051 198704025 CATGATGTAATCAGTCTCCTCC 58 NA Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000045657 1 1 2 80 19 55211038 55211057 TGTTGTGACACCATTATCCA 57 55211099 55221873 GTGCAGTTTCCTTTAACCTG 57 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546 3 1 2 122 3 171884884 171884902 GACATTTGTGGTTACGCGG 60 171878799 171884798 CAGTCAGCAGGGTCTACTG 60 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135 1 1 2 80 5 145139843 145148303 CCTGATGATGCTCATGAATATGG 60 145148343 145148361 AAGAGAAGTGTCACTGGCT 59 NA Rattus norvegicus 81 Ttc8 ENSRNOG00000004542 ENSRNOT00000082856 3 1 2 81 6 122970169 122970187 CTTACAAACCGCATCGTCC 59 122970228 122973707 ATCTCCAATCTTATCAGAGACGG 60 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000066268 2 1 2 81 5 147268786 147270599 TATCAGTTGGTTTACCTGCTG 58 147270642 147270660 AGCCTGAGATCATCTTCCC 59 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 2 2 2 82 8 50223420 50223762 GTTTATGAAGAAAGCCCAGGAG 59 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799 3 1 2 84 X 71448769 71448787 AAACAAGCTCTCAGCTGTC 58 71448835 71449635 CCGTATGCGTACATAACCA 57 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 1 1 1 105 7 140450500 140450518 TTGGATTCCAGGGAAGCTC 59 140449623 140449641 ATTTGCACTTCCGCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 3 2 3 93 13 83085513 83085532 GTTACTTCGAGTCAGTGCTG 59 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Mfsd4 ENSRNOG00000024657 ENSRNOT00000077857 3 1 2 112 13 48821810 48821829 TTACAGTTTCCTCGTCTGTG 58 48820087 48821738 CTTGGGTAAGAACTGATGAGAG 58 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 1 1 1 74 3 61591088 61591106 GTATTGTGCCAAGGACCAG 59 61591978 61591996 TGGTTTAAAGCCACATCCC 58 NA DesignNoJunction Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 1 1 2 60 3 55466624 55466643 ACCAATGTCTTCCTCTTCCT 58 55466721 55466740 TACCAAGCAGTCTGAGAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000081645 1 1 2 80 17 77647642 77647661 CACCGTCAAGTGAAATTGGA 59 77645514 77647600 TTTCTGTTGCTTCTCCAGTC 58 NA Rattus norvegicus 81 Plscr4 ENSRNOG00000008151 ENSRNOT00000010765,ENSRNOT00000081768 3 2 2 80 8 99905572 99905591 CCTGGTTTGGAATACTTGGC 59 99908535 99909566 AAAGCGTGTCATCAATTCCAG 60 NA Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 1 2 2 80 10 110161505 110162246 GCTATCCTTCTGAATTTGCCA 59 110161445 110161464 TCAGGTAGGAGTAGTCAGGT 59 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000044810 1 1 2 80 4 21895320 21897302 ACCCACGTCTCTTCAACAG 60 21897346 21897364 TGTTTGCAGTGTTCCACTG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 3 6 7 82 5 166101436 166116418 CTCGACCAGTATTATCAACCC 58 166101374 166101393 AGGTGTGAGACCAGTAAGAG 59 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000083132 2 1 2 80 5 35972267 35973553 GTTCTGCAGAAAGGAAGGC 59 35973596 35973615 TTAGGATAGCTGGAACAGCA 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 1 2 2 80 1 13289784 13289802 GGTACAGTAGCTCGGACTC 59 13289844 13292005 CTCCTGAATGAGACCTTTGAC 59 NA Rattus norvegicus 81 Arfgap3 ENSRNOG00000046472 ENSRNOT00000078947 2 1 2 80 7 124171725 124171747 CACTGAGATGAAGCAAGCC 59 124171659 124171677 AATGACTCTTCCTTCCGGG 59 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008857,ENSRNOT00000085647 3 2 3 82 3 117435574 117435595 ACCATGGTAACCTCTATCACTG 59 117435638 117438951 AGGTAGTAGGCTCCACCTC 60 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830 2 1 2 84 10 84988061 84988080 GAAGACATCATGCCTGAGAG 58 84988127 84988300 CAAAGTACCTCTTGTGCCA 58 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196 1 1 2 89 3 148438977 148448817 GACAGAAGAGTCAAACTTCCA 58 148454338 148454356 TAAGCGTGGTCTTGAATCG 58 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382 2 1 2 80 18 77251060 77251079 CACCATGTCTGGGAGATGG 60 77247240 77247259 GAAAGGTGGTATCTCCAGCA 60 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 3 2 2 82 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352849 68352867 GTGTCATGGTGAGTGTCCT 59 NA Rattus norvegicus 81 Iqcg ENSRNOG00000026420 ENSRNOT00000032518 3 1 2 130 11 71005259 71007221 GAGCATTGTGAAGCTCCAG 59 71007315 71007333 CTCTCCGCTTGTCCTTCTC 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000045163 1 1 10 80 9 95275501 95275519 CTTCATGCCCAACATGGTC 59 95275560 95298738 ACATAGGCTTCAAATTCCTGAG 59 NA Rattus norvegicus 81 Kif13b ENSRNOG00000013089 ENSRNOT00000085487 3 1 2 80 15 48171545 48172587 CTGATCCTGGACTGAACCC 60 48172631 48172649 GAGACTTCAGCAGCTTTGG 59 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000081127 3 1 2 80 6 126668020 126668038 GAGATCCAGATCCGAGTGC 60 126665965 126667979 AAAGAACTTGTGAGGATTCTGC 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000085946,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 5 6 93 20 3563785 3563803 GAGTTCTCCCGAAGCTACC 60 3563860 3565216 TACCCGAAATCACCTCCTG 59 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535 3 1 2 80 2 127708801 127708821 ACCATCTTGCTAATAGGAGCT 59 127707898 127708762 TCTGTCATTATCCTGGATCCTC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 3 3 4 82 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230012 124230031 TGTTAGGGTGACACCATCAG 60 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000077163 2 1 2 80 8 71019322 71019340 TCACCTTAAGACAGGAGGC 59 71019384 71021697 TGCAGCAAATGTATCTGCA 58 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 1 2 2 98 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780663 117780682 TTCTTGTCTCTGGAGCTCAG 59 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 2 2 2 80 4 177037411 177037430 AGAGAAGAGTTATCCCGACC 58 177033476 177037369 TGTAGATGATCTTGCACTGC 58 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899 2 1 2 129 5 160402308 160404844 ACATACACATAGCAGCCTC 57 160402114 160402132 TCCTTGAGGTACTGGAGAG 57 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324 3 2 3 110 12 20966676 20966694 TGTATATGCTGTGGCCCAC 60 20956240 20966602 AGGGAGTTCAGCTTCAAGG 59 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000078925 1 1 2 82 12 17010877 17010895 GTCCCACTTCTCAGGAAGG 59 17010939 17011553 TTCTAGAGCCCTCTTATCCAC 59 NA Rattus norvegicus 81 Micall2 ENSRNOG00000022533 ENSRNOT00000036744 1 1 2 80 12 17010884 17010902 TTCTCAGGAAGGCCAAGAG 59 17010941 17011543 CTAGCTGAGGGTATACTCTTATCC 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858 2 1 2 154 15 4392275 4395189 GGAACTTGACCAGAATGCC 59 4390233 4392157 TACCCAGAATCCTGAGGTG 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000013605 1 1 2 141 3 119024733 119024756 AGGAGGTTCTTCCCAAAGG 59 119024864 119024882 AACGTGACTTCAGACCTCC 59 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700 3 1 2 83 3 119024872 119024891 GAAGTCACGTTCACCACAC 59 119028046 119028066 ATGGTGATTAATGGTTGCAGC 60 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 1 2 2 80 5 147861943 147862701 TTTCCAAAGAGCCAAGTCC 58 147861881 147861901 TCTTCAGAAACTCCACAAACC 59 NA Rattus norvegicus 81 Nsun2 ENSRNOG00000017254 ENSRNOT00000023641,ENSRNOT00000090884 3 2 2 88 1 36304885 36307703 TGGAGAAGAGTGAAGGTGC 59 36304815 36304834 CTTCCACTGTGAGACTCCAG 60 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391 3 1 2 82 14 20481094 20488296 AACGACGATGAGAAAGATCCT 59 20481032 20481050 AAACCCAGTGACTCAAGGA 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000038780 3 1 4 80 7 28468814 28468833 GAAGCCTACAAAGTCAGCTC 59 28468873 28485478 TTCAAGTGTACTTCCTTCTGAG 58 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 1 3 3 80 12 39693748 39693770 GCTATGACTATCTCAAGACTCTG 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 3 3 3 82 12 39693750 39693772 GAGCTATGACTATCTCAAGACTC 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000071818 2 1 2 81 7 115036729 115037043 AAGGTCTGCTGGTTAACCC 60 115036666 115036685 CATGCACTTCAATTCTGCCA 60 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000071818 3 1 2 81 7 115036737 115037051 TTTCCCTGAAGGTCTGCTG 60 115036674 115036693 TCAATTCTGCCATTTGCCAG 60 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231 3 1 2 82 19 55931978 55937690 CTGGGTCAAGACCTCTTCAG 60 55937735 55937753 TACACCAGCTGTTCACTCC 59 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 1 2 2 88 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425221 159425239 ATACCTAAGCACCGACTGC 60 NA Rattus norvegicus 81 Fam65a ENSRNOG00000017604 ENSRNOT00000023710,ENSRNOT00000089022 2 2 2 80 19 37578270 37578422 CCATGCCAGTAAGATTGATGAG 59 37578463 37578481 CGAACCATGTTGTAGGCAC 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449 1 1 3 100 13 47589323 47589341 GAGGCAAATGACACATGGG 59 47589572 47589591 TTCTTGGATTCCTCGGTCG 60 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449 2 1 3 101 13 47589322 47589340 GGAGGCAAATGACACATGG 59 47589572 47589591 TTCTTGGATTCCTCGGTCG 60 NA Rattus norvegicus 81 Chd8 ENSRNOG00000025011 ENSRNOT00000022593,ENSRNOT00000087722 3 2 2 80 15 28631212 28631231 CTGATCTTCTCCCAGATGGT 59 28630998 28631172 AATGCGTTCGTATAAGTACCTC 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 3 2 2 81 2 78408017 78409686 GAAGACGACGAAGATTGGGA 60 78409730 78409748 CTGCATCCTCTTCCTCCAC 60 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 1 2 2 80 3 113936774 113936794 ATAGGAAACCTGCTCTTCCTC 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 2 2 2 80 3 113936774 113936793 ATAGGAAACCTGCTCTTCCT 58 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000079452 1 1 2 93 9 92382390 92404980 GGAGGAAGGTCACATTTAGG 58 92382316 92382334 TAGATTGCACTTTGGGTGC 59 NA Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 1 2 2 60 1 79899815 79899834 AACGGTATGTGTTGTCAGAG 58 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 2 2 2 61 1 79899814 79899834 CAACGGTATGTGTTGTCAGAG 59 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000049681 3 1 2 107 1 140811656 140811675 GACCCAAACAGCAGAAACAG 60 140811745 140821355 TCACATTGCTCCTGGTCTG 60 NA Rattus norvegicus 81 Serpina1 ENSRNOG00000032669 ENSRNOT00000084157,ENSRNOT00000089931,ENSRNOT00000012577 3 3 3 81 6 127612422 127612440 CAAGATGCAGCATCTGGAG 59 127611486 127612377 AATGGCTGACCTTGTTTGC 59 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000082289,ENSRNOT00000086856 1 2 4 80 1 102824432 102824453 GAGAAAGAAATCCATCAACCTC 57 102824086 102824392 TAACTTGGTCACTGCTTCTG 58 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 3 2 2 81 15 2639718 2639736 GACATCAGGTACCAACTGC 58 2636609 2639675 GACCTTTGCAGAAATAGAAGC 58 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000081866 1 1 2 150 1 241021873 241021891 GTGAGCCCATAATGCTCAC 59 241010359 241013281 TTCTTATTGTCACGAACCTCTC 58 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000081866 2 1 2 151 1 241021873 241021891 GTGAGCCCATAATGCTCAC 59 241010358 241013281 CTTCTTATTGTCACGAACCTCTC 59 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411 1 1 2 82 1 218097792 218098350 AGTTGCTGCAAATGGAACTG 60 218097729 218097748 GTGTTCGATGAAATCGTGGG 60 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928 1 1 2 60 X 111131156 111131176 GTGAGTTCAACTCATACAGCC 59 111136317 111136335 ACTGAGAGTTACGGTTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 2 1 1 60 7 7534339 7534357 TCACCAGTGTTTCCATTCC 58 7534295 7534316 TAGGAAATGGTCTTGACTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 3 1 1 61 7 7534339 7534359 TTTCACCAGTGTTTCCATTCC 59 7534296 7534316 AGGAAATGGTCTTGACTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000009241 3 1 2 103 13 48446375 48446393 CCATAGTGGACACAGGGAC 60 48446459 48448794 CACCAAGTCTTCTCCATCCA 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000089229 2 1 3 80 2 174339249 174340806 TAAATGGCAGAACCATGACG 59 174339188 174339207 TGAAATCCTGCTTCCTTCTG 58 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000076578 3 1 2 93 13 82743493 82745705 GCACAATTGGATTGACACAG 58 82743419 82743437 TTTAGCACATAGGCCTCGT 59 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 3 2 2 80 3 3845412 3845432 AAGTTTGACATTGGGAAGGAC 59 3844831 3845373 TTTGTATAGGACTCGGTCTGTG 60 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 1 2 2 80 1 164302574 164302592 GGAAGATGCAGAAGAAGGC 59 164301987 164302530 CCAGATGTTTCTGCAGGTC 59 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000057562 1 1 2 92 10 51696409 51696427 TTACTTCCTGGCTTCCTCC 59 51693132 51696353 AAACCAGTCATCTGTGCAC 58 NA Rattus norvegicus 81 Myocd ENSRNOG00000003669 ENSRNOT00000078675 3 1 2 110 10 51693138 51694150 CCCAGTTATTCATCCAAAGATGAC 60 51693051 51693069 ATCTCCGGAACTGTTGGAC 59 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 2 1 1 157 6 26602157 26602177 TGGATAGACACTCCGATAACC 59 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000066163 2 1 2 80 15 3974339 3974360 AGCCTATTGAACAAGAAGTCAG 59 3981771 3985016 GGTTTGTGGCTCCATTAGG 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 1 2 2 80 10 11856975 11856993 GCTGAGAATACTCTGCGTC 58 11853798 11856931 GTCGTCATTGCTTCCACTC 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318 2 1 2 174 1 22255250 22275915 CTCCGCGGAAATACAAAGG 59 22252402 22253291 CCTTTGACGCTGTTCACTG 60 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000072262 2 1 2 80 6 95060866 95060885 CTGTCAGATCCACTACTTGC 58 95060801 95060823 CTTTAGACACAGGTCGTTCTC 59 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628,ENSRNOT00000044866 3 2 2 80 1 221743900 221743921 GAGAAGATGAACCTCTTCATGC 59 221743960 221744083 TGTTTCTGATCTGTTCCACTG 58 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000067650 3 1 3 86 14 33117630 33117651 CCGTTCATATTTCTTCCTTGGA 59 33117698 33123803 GTTACTGCAACCCAACCAG 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859 2 1 2 81 15 106272824 106274616 TATTATCGCACAGACCATTCCT 60 106274658 106274676 CTCATCAGCATTTGCCCAG 59 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000085211 2 1 3 109 13 103245360 103246021 CCTTGTTCACAGCCAAACC 60 103245269 103245287 CTACAACTTCCTCCGGGAG 59 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 1 2 2 80 3 8974316 8974810 GATTGACAACGAGACGCTG 59 8974254 8974277 GAAGACAGGATCTGATAATACTGG 58 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 2 2 2 80 3 8974316 8974810 GATTGACAACGAGACGCTG 59 8974254 8974278 GAAGACAGGATCTGATAATACTGGT 60 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000091595 2 1 3 80 11 84399477 84399495 AGGGACAGAAGCACTATCC 59 84399537 84425175 TTGGCATTCCAAACTGATCTG 59 NA Rattus norvegicus 81 Fuk ENSRNOG00000059453 ENSRNOT00000091720 1 1 2 80 19 43356174 43356193 GGATCAATGACCATCTGCTC 59 43356236 43356349 AGTTCCTTAGCACGTCCTG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000041418 3 1 3 111 9 111107827 111107846 CTTTCTACCCTGTGGAACAC 58 111107918 111108466 TCTTTGAATCCGATATGGGTG 58 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 1 2 2 146 10 37039447 37039557 AATCTGGATGGCCAGAAGG 60 37039667 37041545 GAAGGCTGCAATCTTCCTG 59 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309 3 1 2 81 X 1712943 1712964 GGAAAGAGGGTGTTCTTGAC 59 1712881 1712901 CCATCTTCATGTCTTCATGCA 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000081015,ENSRNOT00000084918 3 2 3 80 20 3736929 3736947 GAACAAGTCCCTCCTGAGG 59 3736724 3736887 CTTCAAGTGCTTCAAGGTGTC 60 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 2 2 2 96 13 80465786 80465807 TGATTCAGATGAAGAAGAGGAC 58 80468767 80472967 CACCTGATTCTGAACATGCT 58 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037 1 2 4 80 7 51416128 51417410 GTTTCCAGGTATGACAGCAG 59 51416067 51416087 GTAACTGTATGAGGCAGAACG 59 NA Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 3 2 2 81 12 23789797 23789815 GCAACTAGTGCAGAAAGCC 60 23789859 23814659 CTCTGTCACGTTCTTCATGG 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 3 3 3 81 2 208580953 208583458 AATTCATACCGAGCTCATGC 59 208583500 208583520 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000022571 2 1 3 80 2 208583508 208583650 CTTTCATGCAGTGAGGACAG 59 208583692 208583711 CTCAGACTCACCCATCTGTG 60 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000084867 3 1 5 80 11 81426444 81426464 ATGCTAACGTGTACATGAGAC 58 81424314 81426405 TAGAAATCATCATGTCTAGCGC 59 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000078131 1 1 5 80 11 81426437 81426455 TGTACATGAGACCTTGGGA 58 81424311 81426395 GCCTAGAAATCATTCCTACCA 57 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949 2 1 5 89 11 81423625 81423646 AACCATGATGATTTGATCCCTG 59 81423547 81423575 GTGGGAAGTTGTGTCTGGA 60 NA Rattus norvegicus 81 Zfhx2 ENSRNOG00000025634 ENSRNOT00000083941 1 1 2 92 15 33725032 33725058 CTTCTCCAATGCTTATCCTTAAGAC 60 33724964 33724983 GAAACTGAGCAGCATAACGG 60 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 2 3 3 104 18 72576120 72593018 GCACTTGCTCTGAAATTTGG 58 72593085 72594074 GACCATCAAGAGACCTGGT 59 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365 1 1 2 80 1 197155856 197155877 AAGAAGTCTTAAGATGCAGCTC 59 197155917 197165129 TGATCTGCACAGATTTCTGG 58 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000082855 1 1 2 80 11 87061779 87061802 GGCTCTAGAGTCTACTTTAAAGCT 60 87061841 87063149 GGCAACTTGGAACAACCTG 60 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000024624 3 1 2 81 16 7088501 7089602 CTAACAGTGAAGGGAAGTTCTG 59 7089641 7089662 ATGGTTACTGAAACAGGAAGAC 58 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000077754 1 1 2 80 5 124476198 124476218 ATTTCCAGAAAGGCCATGC 59 124476262 124476280 GCTGAGGGTCATTCCTCTC 60 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340 2 1 2 80 5 86503227 86503245 GAACTCACTGCTGACTCCA 59 86498550 86503183 ACAGTTCTCAGACTCCTCG 59 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728 3 1 2 81 10 72171358 72171376 TGAAGACCACAGGAAGGAC 59 72171208 72171313 CATCCAACATCCTCTGGCT 60 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000021196 1 1 2 94 7 126465687 126465706 TTTACGTGTTTCTCTGCCT 57 126443984 126444003 CTTGTTGCAGATGATGTTGG 58 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085 3 1 2 82 4 85141718 85141832 AGCAGATGACAAATGCCTG 59 85141654 85141672 GGTTGGTGAACTGGAAGTG 59 NA Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 3 2 2 80 4 160536059 160536078 ATCGTCCTGTTGATCATCCT 59 160535755 160536017 ATTCTCGTTCACCTTGTCCA 59 NA Rattus norvegicus 81 Ccnk ENSRNOG00000006985 ENSRNOT00000083208,ENSRNOT00000057171 3 2 2 80 6 132104697 132105483 TTGTAAATGACAGTCTCTGCAC 59 132105523 132105542 CCGCAAGATACATTACTGCA 59 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 1 2 2 80 13 53165293 53165314 TTCTTCTAGTTCTGACTTCACC 58 53160493 53161470 GAAGACCTTCTAATTCCTCCTG 58 NA Rattus norvegicus 81 Camsap2 ENSRNOG00000008741 ENSRNOT00000060410,ENSRNOT00000091015 3 2 2 80 13 53165338 53165357 CGGTTCCTGTCTTAAATGCT 58 53161492 53165296 GACGTGTATATCTGGAGGTG 57 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495 3 1 2 82 14 72121699 72121718 ATTCATGGGAGAACCAAAGC 59 72018129 72121654 ATCTTGGGCTCTTTCCTGG 59 NA InUTR Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214 3 1 2 80 2 189871159 189871177 AGACCTCCTTCAGTGAAGC 59 189871220 189871950 GGACTTCTTCAATTTGCTGC 58 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784 3 1 2 80 20 20644278 20650225 GGTTCCACTTGTAGAACAGC 59 20644217 20644237 AGTACTTCACCATCAATGCTC 58 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000066101 2 1 2 90 3 116950081 116950099 TTGCATTGCATCACGAGAC 59 116950153 116950523 GTCTTCGGTTAACAGCAGC 59 NA Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 1 2 2 80 3 71792419 71798390 CTTAATATGGCTCTCATCGCAG 59 71792360 71792382 CATGATCTTGTTCCTAGTGACTC 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 3 3 3 81 11 73699418 73699439 GATATTGACTCCCTTTGAACGG 59 73699478 73711557 CTGGACCACAATATCACTTCTC 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 2 3 3 119 11 73697840 73697861 CAGTTCCTGTGTATACCAAGGA 60 73698331 73704380 TTCTTCTAGCCGGACAAGC 60 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 3 2 2 95 10 86991678 86992143 GTTTGGAAGCAATCAGTCCC 60 86991602 86991620 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Espn ENSRNOG00000010270 ENSRNOT00000042301 1 1 2 96 5 169301415 169303651 ATCTTCTACTGGCAGCACC 60 169301337 169301355 TTTCAGACTCTTGCCTGCT 59 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000080068 2 1 2 80 12 22965194 22965213 GAGAAGACTCACAGGTCCA 58 22967754 22967772 TCACCTTTGGAACCTGGAG 59 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310 1 1 2 95 8 5685701 5686257 TGCTCCAACATAAAGTCCCA 59 5686315 5686333 CCTGGAGAATGTGAGTGGG 60 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 1 3 3 81 1 198230548 198230567 TACCAGAAGGCAGATGATGG 59 198230021 198230507 CCTTATCTACCTTAATGCCCAC 58 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000026263,ENSRNOT00000077305 2 2 4 65 1 81143932 81143950 GAAGCTGTACGGAGAGGTG 60 81139590 81143903 AGATTCTTGCCTCCCACTG 59 NA DesignRelaxed Rattus norvegicus 81 Atf3 ENSRNOG00000003745 ENSRNOT00000089841,ENSRNOT00000005085 2 2 2 82 13 109819269 109820605 CCTGCAGAAGGAGTCAGAG 60 109819205 109819224 GCTGCTTCTCATTCTTCAGC 60 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 1 2 2 80 3 11366301 11366320 ACTTATGAACTGTCAGGTGG 57 11366113 11366260 AAACTCCATCTTAACCAGCTC 58 NA Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000091712 1 1 2 138 19 55904861 55904879 CTGACTCCTGGATTCAGTG 57 55905728 55907874 TAGCAGTTCCAGCAATGAC 58 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000090989 3 1 2 93 3 172387978 172387997 GATAAGAAACGCAGCAAGCT 59 172388053 172424546 CTCCAGCACCTAGAAGCAG 60 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 1 2 3 80 4 161731672 161731692 ACTAATCTTCTGAAGCTGCTG 58 161731538 161731631 AAGATCCTCAGGATCCACAC 59 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 3 2 2 157 9 15114100 15114786 GGCCAGTTTATCAAACACCT 59 15116164 15116182 GGTCGCATATGCAGATGTG 59 NA InUTR Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317 3 1 2 80 5 165425152 165425172 GAAGTCATTCACTGCTGTCTG 59 165425214 165427083 GGGCCACAGTCAATAATGC 59 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 2 2 2 80 1 64117136 64117298 TCTGGAGAGGGTTACCTAGAG 60 64117340 64117358 CAGATAGGTGATGGCCAGG 60 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130 3 2 3 134 4 51930810 51936045 CTTTGGTTCCGGTAACTCC 58 51917541 51930715 CAACTGAGCAATAATCAGTTCC 58 NA Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612 1 1 2 80 9 98634045 98637853 CAAGAATTCACTGGAAGGAAGG 59 98637893 98637912 TCGTCATTTAGTCCCGACAC 60 NA Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612 3 1 2 80 9 98634047 98637854 AGAATTCACTGGAAGGAAGGA 59 98637895 98637914 GTTCGTCATTTAGTCCCGAC 59 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000080773 2 1 2 88 20 32077131 32077850 CAGTGGGAGACCAAATGAC 58 32076231 32076249 CTTCTGAATTTCTTGCCGC 58 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230 3 1 3 102 14 34177429 34177447 AGACATCTTCACGCAACGA 60 34176094 34177360 TTCAGTTGTCACTGTGGCA 60 NA Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 3 1 1 61 17 78739914 78739932 GACATTGAGGACTCCTGGG 60 78740515 78740533 TAGTTGAGGGTCCCTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600 1 1 2 89 1 81699327 81699586 CTTGACAATCCGGAAAGCC 59 81699639 81700298 CTTCTTGCTCTTTCTGCGC 60 NA Rattus norvegicus 81 Prr13 ENSRNOG00000042094 ENSRNOT00000048504,ENSRNOT00000090695 3 2 2 65 7 144065652 144066010 GTGGAATCCTAGTGCTGGG 60 144066039 144066057 GGATTGGAACCTCCTGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356 3 1 3 86 4 56633086 56633104 CCATGATGCCTTCTTGGGA 60 56633152 56638216 ACAATCTTTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Ppm1k ENSRNOG00000006893 ENSRNOT00000009202,ENSRNOT00000087835 3 2 2 80 4 88712896 88712917 ACAAGGAGTATTGGAGATTTGG 58 88712957 88713825 GTGGTAGAGCTTAATCCTGG 58 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 3 2 2 80 18 3210271 3212221 TGTGATAGATACAAAGGACAGC 58 3212260 3212280 GTTTCACTGACCAATGTACAG 57 NA Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867 3 1 2 80 10 94475480 94476021 TGTCTACAGTTTCCCTCCAC 59 94476063 94476082 GAGCAGGTCACATTAACGTC 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 1 2 3 82 1 87096606 87097312 TTGGATGCTGAGGACATCG 60 87096542 87096560 AAGGCATGGTAGAAGCTGG 60 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 3 2 2 80 6 135084604 135084623 TCAGCGAGAGGATCAAACAG 60 135084665 135084831 CGTGGATGTTCTTCAGTTCC 59 NA Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 2 2 2 80 9 85566394 85566413 CTCACATCTTGCAGAAAGCA 59 85563574 85566354 CAATTAGGATTGCAGTTGTCAC 58 NA Rattus norvegicus 81 Serpine2 ENSRNOG00000015461 ENSRNOT00000020919,ENSRNOT00000077331 3 2 2 80 9 85566394 85566412 TCACATCTTGCAGAAAGCA 58 85563573 85566352 GCAATTAGGATTGCAGTTGTC 58 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 2 3 7 118 15 34646202 34694159 TCAACACTGAAGGAGGAGAG 59 34646103 34646122 GAAACCACCACAGTAATGGC 60 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 2 3 7 98 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34668153 34668393 TTTGCGTTCCAACTTCAGG 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000082791 2 1 2 80 4 109475534 109475553 GACCCTCCATAACATGTCCT 59 109475470 109475492 GCTAGACACAGAAGAACACC 58 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857 2 1 3 88 18 73226641 73226659 GTTGTACTCCCTGATGCAG 58 73226711 73235085 CCCAGCCAATGTTCTTGAG 59 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 2 1 1 91 20 3793017 3793035 CTCAGATACCTGGAGCTCG 59 3791977 3791995 ACATCACCTTCAGGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 2 2 2 81 19 56784325 56787161 GGAACTTTCTCACTGATTCTGAC 60 56784266 56784285 AGGTGGAGGTAGACAAAGAG 59 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640 3 1 2 81 3 5544083 5544953 TGAGATCCAGGTGTACAGAC 59 5544996 5545015 CCGTTGGAAGTAGGTAAAGG 58 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 1 2 2 60 2 86474342 86474361 TTGGAGAATTACAGCAACCT 57 86471481 86471502 CACATTCTTTACATTTGTGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000059190 2 2 3 80 10 35877249 35877269 CTTGAATTCTACAGCAGGAGC 59 35877311 35878041 CTGGACTGGTTTGACAAGC 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000080840 2 1 4 155 1 81779929 81780025 CCATTTAGAGGTGAACCCAG 58 81783701 81783719 CTTAGCATGTCAGCATGCA 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058 1 1 2 80 3 1547541 1547559 CCTACTCTATCAACGGGCT 58 1547214 1547498 TGTCCTGGTCACTATCATCC 59 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 3 3 3 81 20 3991813 3991961 GCAGGAAGTTACATTGCTACC 59 3992004 3992022 CACAACCAGACATGGTTCC 59 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 3 2 2 86 1 32338073 32339431 CACCAATAACTGCTATAGAGACG 59 32338009 32338027 AAGGAGAAGACGACGAAGC 60 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000008196 1 1 2 132 4 161728196 161728214 AAGTCAGGTGGAACAGGTG 60 161728499 161728767 GTCAATGCAGCACTTGAGG 60 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000011801 2 1 3 81 13 52291783 52294634 CAACATAGTTCATGGCTCGG 59 52290977 52290996 AGATTGCATCCTCTCCTCAG 59 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 2 2 3 80 18 62929285 62930804 CACAGACCAGGACCTACTC 59 62930846 62930866 AAGTTCACTTTGTCCACTTGG 59 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 3 1 1 60 4 98731702 98731721 AATACTCCAGAGTCACACCA 58 98728685 98728703 TCTTTGCTTTGGAGCTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000088821 2 1 2 94 11 84044109 84044669 ATCAAGAGTCAGCATCAGAC 57 84044034 84044052 CGATACTTGATGCCTTCCC 58 NA Rattus norvegicus 81 LOC500445 ENSRNOG00000022751 ENSRNOT00000031509 2 1 2 85 5 58309500 58309520 GCACTGATAATTTGGCAAGTC 58 58308994 58309454 ATTCTTCGGAAACACTTGGC 59 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582 1 1 2 80 3 104168274 104176576 AAAGCCATGCAAGTAAAGTCTG 60 104168215 104168236 CTGGATGGAATACAAGTCTCCT 59 NA Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 1 2 3 129 18 15468098 15480352 GCCAACACATACCTCTTTATGG 60 15480441 15494599 CTTCGGGATAATCTGTCCCA 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000011851 2 1 2 113 4 57419077 57436615 CAAGATGCTAATGGCCCAG 59 57436690 57436710 CGCCATAATGAATCCCTTTCC 60 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000011851 3 1 2 115 4 57419077 57436615 CAAGATGCTAATGGCCCAG 59 57436694 57436712 TCCGCCATAATGAATCCCT 59 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000039984 2 1 4 81 7 78512216 78512234 CTTGTGCAGGAATGTGGAG 59 78512276 78520246 TGGACGTAAAGACATTGATGTC 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 1 2 5 80 6 80235407 80235430 GCTTAGAGTCATCTTTAAAGGAGG 59 80235467 80237051 GTGATCCTTCAACAAACTCCA 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 1 2 2 62 15 34342123 34342142 TGACTGGAAAGGAGATTGAG 57 34341771 34341789 GCTCCTTGATTCGTTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 3 2 2 98 15 34342102 34342120 TGACATCGAACCCACAGAC 60 34341713 34341731 TTGCCACTGTAGATGAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611 1 1 2 80 20 46668080 46668102 CCAAGAGATGTCCCTTTAAAGAC 59 46668139 46744172 GGATTCTGATTCCAAGTTCCTC 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 2 3 3 80 4 161954336 161954354 AGTCTAGCTGACTGTGGTG 59 161953932 161954294 CAAGTTCCGTAGGAATCTCAG 58 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 3 2 2 86 13 51127556 51127574 CAGTGAATGCAACTCCCAC 59 51127624 51128196 AGCAAATGATCTCCTGGGT 59 NA Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000056221 3 1 2 97 7 119826156 119829233 CTACTGGAGGACATCCAGC 59 119829293 119830480 GATACTGGATGCCCTTAGCA 59 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000088235 2 1 2 81 4 57833051 57833069 CGAGGCAAAGGGATATGGA 59 57833111 57833910 CTGATGAACTTGGTTCTCATGG 59 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 2 2 2 80 18 11780755 11780774 AGCCTGTAAAGATGTGACCT 59 11779024 11780716 CACTCCTTCAAACTAACTCTTCC 59 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278 2 1 5 83 8 6152360 6152378 ACAGCAGGAGTTATTTCGG 58 6140366 6150138 CGGAGAGCTAATTCCTGAC 57 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000085285 2 1 5 81 8 6140683 6152367 TATTTCGGCAGACCGTCAG 60 6140322 6140341 CATTCTGAGTCCCTCCATCC 60 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 3 2 2 124 8 72743431 72743537 TCTGGCTAGAGATCTATTACACC 59 72743619 72744253 TAATCTTGTAGCAACCTGGAC 58 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218 1 1 2 108 8 116273542 116273564 CCTATAAGGAGTACCAACTACAG 57 116274206 116275428 TGATTGGCAACTTGACCTG 58 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446 3 1 2 80 20 32261123 32264850 GCAGATGAGACTCTAACACG 58 32261062 32261082 CAGAAGCTTTATGGTCTCCTC 58 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 1 1 2 81 3 114921003 114921022 ATTCAAGATAGAGTGGCGGA 59 114921066 114921620 TTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 2 2 2 82 20 32296564 32296582 ATATGAACGCAGGTCAGGT 59 32294811 32296518 GGGAACAGCAATACCTGGA 59 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000084432 1 1 2 93 10 59868424 59871364 ATCTGCAGGATCAAGACTGG 60 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 1 2 2 87 3 122942746 122943058 TCTCAATGCCAGGATGTGG 60 122942677 122942695 TGTTGACCATGGGAGACAG 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369 3 1 2 110 3 122946280 122946944 GGACTCCATCCAAAGAGCT 59 122946079 122946097 TCCTGTTCAAAGCTCAGCT 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000091319 2 1 3 108 7 40309614 40309632 ACTAAGGCACCATCCTGAC 59 40309523 40309545 GGTTTCCATTGAATTCGTTCCT 60 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588 1 1 2 85 7 117661379 117661397 CAAGGCATTTACAGCAGCC 60 117661445 117661544 ATCTCCAGCCTCAGAATCAC 59 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588 2 1 2 86 7 117661378 117661396 CCAAGGCATTTACAGCAGC 60 117661445 117661544 ATCTCCAGCCTCAGAATCAC 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000048875 3 2 5 178 8 39455855 39460767 GTGGACATTGTACTCTCCCT 59 39437203 39437221 CATCATTGTCAGAGCTGGG 58 NA InUTR Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 2 2 3 84 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717828 164717848 TCAGGGTGTAGATGATAGGGT 60 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801 1 1 2 80 3 123072608 123073065 CCTTCATTGATGGCTACCG 58 123073108 123073127 GCCAGAAGTCCTCAATTGTG 59 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100 3 1 2 95 10 49288915 49288933 AGTTGATGCCAGAGGTGAC 60 49288990 49289051 AGTAAATCAGAGTCCCTCTGC 59 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 2 2 2 127 16 24978574 24980917 GCCTAAAGGACTGAAAGCA 58 24981007 24982625 TCTCCGTCTTCAATCTTTCC 57 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 3 2 2 80 18 16526883 16526901 TCACTGAGGGTTTGTCCAG 59 16525398 16526841 CAAAGTCACCGAGTTCATGAG 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611 1 1 3 83 17 6169872 6169890 TGTGGTAGGATTCTGCCTG 59 6076041 6169827 CATGAGACATCTTTCATGCCA 59 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000036193,ENSRNOT00000002636 1 2 5 80 11 78240623 78240642 TCTGGACTATTTCACGACCC 59 78237913 78240582 TTCAGACTTGCCAAATCATCC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062052 2 1 5 82 2 1506288 1506307 CTCCTTCTGCTGATGGAGAG 60 1501707 1506243 CACGCCTGACTTAACAACC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 3 3 5 80 2 1494399 1494417 AAAGGCAGGAGAAATGTGG 58 1493435 1494357 TTCCATCTTTATCCTTGGCTG 58 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 3 2 3 84 6 132773942 132773961 CTGTGAAGTAGACGTGTCCT 59 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000078453 1 1 2 87 5 173337574 173337592 TCCCTTGGGCAAGTATCAG 59 173337224 173337525 GGATGTAGGACCAAAGTTGTC 59 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 1 2 2 80 1 199019939 199026204 GGACATCATTGGCAGAGGA 60 199026245 199026266 ATCTTCACTGCAAACTCATCAC 59 NA Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116 2 1 2 103 7 107585865 107585883 GATGACAGCAGCAACTTCG 60 107585779 107585801 ATCTTCAAAGTATTGGGTGCTG 59 NA Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 2 2 2 80 X 153574278 153582940 AAACGTAAGCACAAGCCAG 59 153574216 153574236 CAGGCAGATAGTAGTGTCCTC 60 NA Rattus norvegicus 81 Ndel1 ENSRNOG00000004139 ENSRNOT00000005574,ENSRNOT00000065505 1 2 2 80 10 55434298 55434319 GGCTGAACAAAGAAATAGAGAC 58 55431654 55434259 TCTAGTTTCTCCTTTAACGCC 58 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000082970 2 1 2 83 X 128613778 128613796 TTACGGCCTGAAGATAGCT 58 128613843 128613951 TACCTGCGTGTTGTAATCC 58 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000002683 3 1 2 89 11 37928024 37928043 AGCTCCCTTCAGAATGGAG 59 37923192 37923210 TCGATCTGGATCTCTGCTG 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422 1 1 2 80 7 117676952 117676971 ATATCACTGCAGCTATCACC 57 117676817 117676909 CTCTGTCACCAAGTCTGAG 57 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 1 2 2 120 7 142459199 142459217 CATGGACCTCTGCTTCTCC 60 142459301 142461325 CATCTTCTCAGCCTCCTCC 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000035576,ENSRNOT00000036283 1 2 8 133 1 226463365 226468036 AAAGCCATCAATGGCACAC 59 226468133 226468151 CTTCTCAAGGCGTCCTCTC 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477 1 1 2 80 14 67165739 67166933 TCAGAGTTCTTCAGCTCATGG 60 67165679 67165702 GTCTTTCTAGCTCCTTAAGATCCT 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477 3 1 2 80 14 67165745 67166937 CACCTCAGAGTTCTTCAGC 58 67165683 67165704 TTCTAGCTCCTTAAGATCCTGG 59 NA Rattus norvegicus 81 Tnik ENSRNOG00000012422 ENSRNOT00000086399 1 1 2 80 2 114342005 114342026 GTGAAACCAGAAGAATCCAGAG 59 114343928 114349254 CGTCAGATCCTCATCTATAGCT 59 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227 1 1 2 98 20 44804039 44804057 GCTGGATATCTGCCAATCC 58 44804119 44854310 AGACACGTCTTCTGACCTG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 1 2 5 82 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000085516 1 1 2 106 18 24874196 24879960 AGTCATCCAGGTTTCAGGC 60 24880030 24880048 CACTGCATGTGCAGATCTG 59 NA Rattus norvegicus 81 Zfp346 ENSRNOG00000016867 ENSRNOT00000082042 1 1 2 82 17 10052066 10052087 GAGATACCTAGCAATCCATGGA 59 10050167 10052023 CTTTGCTTCTGCTGCTCTG 60 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000074197 1 1 2 80 6 146826722 146826743 ACGGTAGTGTCATTAACAAGAG 58 146826568 146826681 ATGTGTTGGTCTGTGTTGG 58 NA Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000074197 3 1 2 83 6 146826722 146826745 GTACGGTAGTGTCATTAACAAGAG 59 146826567 146826681 GATGTGTTGGTCTGTGTTGG 60 NA Rattus norvegicus 81 Tssk2 ENSRNOG00000037997 ENSRNOT00000057806 2 1 1 66 11 87235290 87235309 ATCACATCTCTGGAGCTGAG 59 87222246 87222264 TTCTCACCCATGAAGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912702 ENSRNOG00000047358 ENSRNOT00000072859,ENSRNOT00000071182 3 2 2 151 14 1779186 1781606 TTCATTCCATGATGCCAAAGG 59 1779052 1779076 TACCCAAGTTCCAAATTGAAGC 60 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910 3 2 3 85 X 70978685 70978703 CTCGACTGAAGTCAGCCTC 60 70977624 70978638 AAGAGGATGCTAGGTTCAGAG 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000064743 2 1 2 80 2 3780617 3809220 CCAGGGATGTGTTTCAGAC 58 3809263 3809282 TGCTGACTATTCCTCTCCAC 59 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 1 2 2 80 5 131851189 131851378 TGTACCCAGATGAAGTCGC 60 131851127 131851149 CAATATTGGAGCATCCAACTCTG 60 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000079108 2 1 5 80 3 8595006 8596955 CCAGGAAACAAGATACTGGAG 58 8597458 8597476 GCTTCAAGCTGAGATTCCA 58 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000091697 2 1 5 98 3 8594947 8594965 GAGAATGACAAGCTACGCC 59 8595377 8596386 ATATGCTATGCCGTCGAGG 60 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 1 3 5 109 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572867 71579459 TCATAGATGGCGACCTCCT 60 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404 1 1 2 80 3 123597649 123597669 CTCCCTGATACTCATCTGGAC 59 123597500 123597607 CTGGCACACCATTCTAGGT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000067954 1 1 3 80 4 27537849 27537867 CTTATTGTGGAGACCGCAG 58 27537911 27538379 TACAGAGAAACCGTGAGCT 58 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000067954 3 1 3 82 4 27537849 27537867 CTTATTGTGGAGACCGCAG 58 27537912 27538381 GATACAGAGAAACCGTGAGC 59 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588 3 1 2 80 5 146691742 146695017 CTCTGTCAAGCTATATCCTGTG 58 146695058 146695076 AGTTCCCACTGTGTACTCC 59 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000057758 2 1 2 105 4 133125805 133126954 CTTTCTGAGGTTAACACTTCCTG 59 133121695 133121713 AGTTTCCTTGGGCAATCGA 60 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 3 1 3 81 12 21745554 21749650 TTGAACAAGCCATGGTCCT 60 21745491 21745510 CCCTTCAACAGATGCTTCTC 59 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 1 2 2 91 17 9836506 9837060 CCCTATAGCAAACATGTCTTAACC 60 9836438 9836456 GTCTTGGTCAGGAGTCTCC 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 2 2 3 80 12 37627112 37627130 CATGAGCTCTGGTGATGAC 58 37627173 37628219 ATTAACCATGGATCGTCCTC 57 NA Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000004881 1 1 2 86 13 60595516 60595534 TGGCCATTGTATCTGACAG 57 60595584 60596663 TATCCATGGGTTCCTCCTC 58 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000083458 3 3 5 80 10 56196354 56197214 TCACCCTTAAGATCCGTGG 59 56197257 56197276 CACGGGCATCCTTTAATTCC 59 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 1 2 2 80 11 87699133 87699153 TTCGTGTACTTAATTGGAGGG 58 87699195 87706346 GTGTCTTGGGTCATACCTC 57 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000048344 1 1 2 80 16 6971761 6971779 CCAAGTAGAGCTACCCAGG 59 6973414 6973433 TTTGACAACCCTGGGTAGG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000079201 1 1 2 85 12 39387877 39387895 TTCATATCCACAGCACACG 58 39380520 39387828 GCTCATCAAAGCAAAGCAG 58 NA Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 1 2 2 81 6 136394368 136394467 CAACCAGAGATGCTTGATTCTG 60 136394506 136394527 TGTGAGAATCTGGACAGTACAC 60 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543 3 1 2 110 5 134706540 134708484 ATAGACCAGAGATGGGCAG 58 134708558 134708576 CTTCAAACTTCCCTGGCAG 59 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000057872 1 1 2 127 20 27039227 27043799 GAAGGAGATCTGCACATTAGTC 59 27043886 27045975 CTTCATTTCCTCTCACAGCC 59 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539 3 1 2 80 11 88180473 88180492 TCACAGAACTTACAGCTGCA 60 88177150 88180431 CTTCCCTGAAAGGACTTGGA 59 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000067528 1 1 2 80 10 55533800 55536241 AAGTCAAGGTTGGCTTAAGG 58 55533739 55533759 CTCCTTTCATGTTCTCCTGTG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134206577 134206596 ACCCTGACTATGTGAAGGTG 59 134205120 134205845 AACCATAACCAATCCAGGGAG 60 NA Rattus norvegicus 81 Cdc42bpb ENSRNOG00000009675 ENSRNOT00000080623 2 1 2 154 6 135751554 135751572 GACCAACTTCAACCACGTG 59 135750895 135750918 CATAGGGCTTGTTCCTGGA 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653 2 1 2 81 1 217789477 217789496 GAAACGGAAGCAGATGAGAC 59 217786777 217787354 GGGATGATCCTTGACAGCT 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 3 3 3 80 13 56603696 56604296 AGAACAAGAGACATGTTTGGC 59 56604335 56604356 CTGTCCTTCACTTTGAATGTCC 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 3 1 18 60 1 43508749 43508768 TGGATCGAACTAACCACCAG 60 43518487 43518506 CCCAGTTCTGTGTATATGCC 58 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000086685 3 1 18 99 1 43454950 43507138 GGAAGTTACCTCAGATACACCA 59 43507198 43507216 GAAAGGGCAGTGTACTGGT 60 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 9 18 60 1 43508743 43508764 ATACAGTGGATCGAACTAACCA 59 43527513 43527531 GGCAATGGAGCAGTTTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 1 2 2 80 1 19090288 19092966 GTTCACTGGAGAATGTTTACAC 58 19093007 19093025 TTCCGACATCAATGGACAC 58 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000028786 2 1 2 91 9 16754373 16754632 AAACTGGATAAGGAGGCCG 60 16754687 16754705 TTACTGAGAACCTGCAGCA 59 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000044865,ENSRNOT00000041277,ENSRNOT00000091650 3 3 3 80 7 12665244 12665343 AAGTTCTTCCAGAAGGACCG 60 12665183 12665201 CAGCTCAATTAGTGCCTGC 59 NA Rattus norvegicus 81 Brdt ENSRNOG00000002073 ENSRNOT00000061538,ENSRNOT00000080901 3 2 2 80 14 3446467 3446486 GTGGAAACACAGTTTCTCCT 58 3444257 3446426 ATGATGGTGTAATAGTCAGGC 58 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 1 1 1 60 10 54246609 54246627 TGAAGTGTTGGAGATCGTC 57 54250734 54250752 GTTCTTCACATCCTCAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000057061 3 1 2 102 5 134737156 134737174 ATCTTTCTTGGTGCTGCTG 59 134738183 134739017 TCAGGTTTCCTATGGCAGG 59 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949 2 1 2 80 8 22161435 22161454 GATGCCAAGTATCACATGCA 59 22155433 22161393 TAATCCTTCCTCCACTCCAG 58 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 1 3 3 80 1 233134989 233135009 TCAGTCCTTGACTACAAAGTG 58 233129801 233134947 GTCCATGACGTAGATGCTG 58 NA Rattus norvegicus 81 Aar2 ENSRNOG00000020086 ENSRNOT00000086425,ENSRNOT00000027369 2 2 2 82 3 152631147 152631165 CATGGACTTGAGCTATGCC 58 152631211 152635247 ACTGGAGTTCACCAAGGAC 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093 1 1 2 81 14 77309325 77309709 GGAGCCTGGTAAATTCAACTG 59 77309264 77309287 CTTCTTGACTGATATCTCGTTGTC 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 1 2 2 80 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117846 ACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000087883 3 1 2 89 4 155655109 155661802 GAGACTGTCAGGAACCTGG 59 155661855 155661873 CTCTGAGAGTCAGCTGTGG 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000080017 2 1 4 80 4 165312779 165312800 CGTTCAACAGATCAAAGAACAG 58 165310662 165312739 CAATTTCACTGCCTTTGTGC 59 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 1 2 3 80 6 136119892 136127001 CTAAACTCACCAGAAGACTTCC 59 136128837 136128856 GTTCCGAAGATACATTGCGA 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377 2 1 2 176 1 174461934 174461952 TCATCCAGGGTACAAGCTC 59 174461111 174461375 TAAGCCTCTTGCAGTCCTG 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377 3 1 2 177 1 174461935 174461953 GTCATCCAGGGTACAAGCT 59 174461111 174461375 TAAGCCTCTTGCAGTCCTG 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 3 2 2 122 18 64015930 64015948 ACACGTTCCTTCATCAACC 58 64033405 64040276 ACACATGATCTCTGAAGCC 57 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000089140 2 1 2 80 17 16340531 16354216 ATCGGTCATTGGAGACGAG 59 16354260 16354278 CACTGTCATTCACCAACGT 58 NA Rattus norvegicus 81 Sh3pxd2b ENSRNOG00000004063 ENSRNOT00000073675 1 1 2 80 10 17236637 17246709 CTTTGACCTCCAGATGCAG 58 17246753 17246771 AATGGGATGATCCTCTGCT 58 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000078810 2 1 2 80 1 217679936 217680300 CTTAGGAAGGCTGAGGAGAG 59 217679875 217679894 CTGATTCTTCTCCTCCAGCT 59 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 1 2 2 80 2 18408273 18408294 TGGAAGATATAAGTGTGAGGTG 57 18408334 18411766 AACACCACACCTTGTAACTC 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000086244 2 1 2 80 12 37761826 37765902 CAAGACTAAATCAGGAGGCC 58 37765943 37765963 TCTTGAGTGTCATTCGAACTG 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000086244 3 1 2 80 12 37761827 37765903 AAGACTAAATCAGGAGGCCT 58 37765943 37765964 TTCTTGAGTGTCATTCGAACTG 59 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002478 3 1 3 80 11 88875238 88875538 CTGATGGCAAGTTAATTCAGGA 59 88877142 88877160 GACCACCATCTCCAATTCC 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 1 3 5 97 20 5416879 5416898 TTATGTTGTCCTTGGAGCTG 58 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Tbc1d2 ENSRNOG00000023348 ENSRNOT00000011714 2 1 2 91 5 62241341 62247733 ACCGAGATACAGAACACCA 58 62241268 62241286 CTCTGTGACGACTCTTCCA 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 1 4 4 80 16 54382448 54383439 GGCAATTTCAAGACAACTTTCC 59 54383478 54383498 AACCTCTTGTTGACCTTTGAC 59 NA Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 2 2 2 95 7 121299762 121300067 AATTGCTCACACTCAGATGC 59 121299686 121299704 AGCTTCTCAGCTACAGTGC 60 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000080382 1 1 3 82 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29866885 29868360 TGTGCCTATTGTAGCTGTG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000081631 3 1 3 81 16 10921116 10921134 GAATCTTGGCCCAGATGAC 58 10915988 10920604 TCAAACCTTTCCCTTGACC 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 2 2 3 80 16 10889645 10895047 TGAGAAAGACTACATCAACCTG 58 10889586 10889605 TCGATAAACTTGTCACCAGC 58 NA Rattus norvegicus 81 Ralgapa1 ENSRNOG00000046256 ENSRNOT00000010824,ENSRNOT00000083857,ENSRNOT00000065230 2 3 3 80 6 76461472 76461493 CCATTCTCACCAATATAGGAGG 58 76455480 76461434 GATTTGTAAGGTTTACCTCCCA 58 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 3 2 2 84 7 144826212 144826233 AAGGAAACAAGAGGAAATCCAG 59 144821383 144826168 GCGATATCATTGCTTTGCTC 58 NA Rattus norvegicus 81 Pdgfd ENSRNOG00000029148 ENSRNOT00000076529 2 1 2 131 8 4441117 4441135 CGGCTCATCTTAGTCTCCA 59 4441229 4577159 GAGGTGATTGCTCTCATCTC 58 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326 3 1 2 91 14 71875844 71876776 TTTGACAGTTGGTCTTGGC 59 71876831 71876849 TTCTCCAGAGCCATGTCTG 59 NA Rattus norvegicus 81 Cntn1 ENSRNOG00000004438 ENSRNOT00000006219,ENSRNOT00000080621 2 2 2 80 7 133457355 133457377 CTGCTAATCTCCTTAACATCCTG 59 133460969 133469106 TTTATCCTCCTCAGAAACTCCA 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 3 2 3 80 20 5094132 5094151 CTCGAGTGATGACAGAGGAG 59 5094193 5094288 AAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Lrit2 ENSRNOG00000022726 ENSRNOT00000038771 2 1 1 60 16 14319855 14319875 GAGTGTACCTGTTCAGAGGAG 60 14320191 14320212 CCAAAGACATAGACATGCACTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000085278 1 1 2 106 8 56499892 56499910 GCACAGACCACTGAATCTG 59 56501942 56501962 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 3 2 6 80 12 41262182 41262200 GTACTTCCTGAATTGGCGC 59 41258880 41262141 TTCTCCTTACACAGTTGGTACC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024187 3 1 7 89 19 15119199 15119220 ATGATGAGATTTGTACCACCTG 58 15119267 15119475 TGGTATACCCATATAGGAAGCA 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036642 3 1 4 81 8 124844303 124892616 GCAGGAACGTATATGACCG 58 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637 2 1 6 80 1 41898760 41898780 AGGAGATACTACACAAAGCCA 59 41898128 41898718 GTCCCTTCTCCAACCTCTG 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 3 2 2 80 14 66742813 66744685 CTACATCACTAAAGAGGAAATGCTG 60 66744723 66744741 TTGAGGACAGGGTATGTGC 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000044081 1 1 2 123 11 24435423 24447174 ATGAAGGGTCTGGGTTGAC 59 24431766 24435337 TCTTCTGCAAAGAACACCAG 59 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000087534 1 1 2 124 1 165646265 165646285 AAAGACATCCTTGATCACCAG 58 165647882 165649293 ATAATTGCAATCGCACGGT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000025536 3 1 4 81 1 139992314 139993826 AAGGTCACATGGTTTCAGAG 58 139992252 139992272 ATAGATGCCATGGTTAAGAGG 57 NA Rattus norvegicus 81 Bach1 ENSRNOG00000001582 ENSRNOT00000002151,ENSRNOT00000083275 1 2 2 81 11 27386814 27386832 TTTGGGAGATGACTCGGAG 59 27386877 27389030 CAGTTTCACCTCACAGTCC 58 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000084053,ENSRNOT00000078412 3 2 4 80 20 12855160 12855179 GGGTTTGCTACCTATGAGAC 58 12854534 12855119 CATGATGTCTCCAAAGACCTC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000079769 1 1 4 80 14 80091417 80091436 ACATGATCTCCTATTCGCCC 60 80088732 80091374 AGAGCAACTGAGGTGACTC 59 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000070958 1 1 2 86 13 84065448 84067600 GCTCTATAACCAGAGGAGGA 58 84068340 84068358 ATCTCACTGTAGGCCTCTG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302 1 1 2 81 5 137084514 137084533 GGTTCAAAGACTTCCTTCCT 58 137079263 137084470 CTGATTGGTGAACCACCTG 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000088002 3 1 4 80 12 38447619 38450301 AGGAGAGTCAGATTGATTTCCTC 60 38450340 38450359 TCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685 3 1 4 80 12 38447621 38450299 GAGAGTCAGCAGATTGATTTCC 59 38450339 38450358 CTCCACCTTCATCTTGAGGT 59 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000078244 1 1 2 125 1 201477179 201478413 ATACAGAGGAGCATTCCAGC 60 201478499 201478519 TGGTATAGCTTGAGACCAGAG 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 3 2 2 80 6 91891993 91892012 GATGTGGACCTCAATAGCTC 58 91888217 91890315 GCTGAAGAAAGACTTTGAGTG 58 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000010366 1 1 3 171 6 3373055 3444295 CTACAAGGCACGGAATGTC 59 3345403 3355252 CCAAAGTTTATCTCGCCTGAG 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 2 1 2 81 16 85299044 85305255 GGAAACAGAACAAGATGTAGAC 57 85298984 85299002 CTCATCATGGTGAGAAGCA 57 NA Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271 1 1 2 88 19 14533694 14533713 ATGGACATGGAAGAAGCCA 59 14551323 14551341 TTGATATCACCTCGGCGAG 59 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 3 2 2 80 9 94229385 94229406 GGAAGGTAATCTAGGACCTGAG 59 94229446 94229611 TCCACACTGTATGTCTTGGA 58 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382 3 1 2 137 8 76413355 76413373 TGTTCCCATGGAGTACGTC 59 76416993 76426299 TGCATTGATGTCTGCTCAC 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522 3 1 2 80 1 87935937 87937278 GAAGCTTAAGGTACAATCCCG 59 87935877 87935897 GATCATAGGCATTCTCCTTGG 58 NA Rattus norvegicus 81 Rcsd1 ENSRNOG00000003283 ENSRNOT00000082422 3 1 2 80 13 83865739 83869788 CAGAATGGTGAGGAGAAATCAC 59 83865680 83865700 CTTCTCAATCAGAGGTGAGCT 60 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095 2 1 2 81 6 6915317 6946704 AAGCATGCTAAAGAAACTGAGG 59 6946746 6946764 GTTTCAGCTGGTGCTTCTG 60 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754 3 1 2 87 1 143712633 143718171 AGTCCTACACTTCAAAGAAGTC 58 143712567 143712587 TTGTTCTCCTCTTCTTTGCAG 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 2 2 2 107 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001092 88002687 GAAGTGGTCAATGTTCACCTC 59 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 3 1 1 63 11 28979104 28979122 CTATGGCTATGGAGGCCTG 59 28973582 28973601 ATAGTAGGAGCCATAGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 3 2 2 102 19 16419471 16419491 AGGAGGAGAACATTGATCTGG 59 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000073355 2 1 2 80 1 128672762 128683594 AGCTAAAGAAGGGAATTAGGG 57 128686474 128686495 CATACAAGAACGTCTCAATCTG 57 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000074954 1 1 6 80 13 84510543 84522953 TTATGCCAGTTCGCAAAGG 59 84522995 84523015 CCTTCTCGACATAGTACAGGA 59 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000019946 1 1 2 96 10 62690072 62690091 CTAACCAACAGCAAACCAGG 60 62690272 62690298 TGACACCAGGTGTTGAAGG 60 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000019946 2 1 2 97 10 62690071 62690089 GCTAACCAACAGCAAACCA 59 62690272 62690298 TGACACCAGGTGTTGAAGG 60 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 1 2 2 80 8 76870387 76874414 ACTTCCCTTAATGGTCCCT 58 76870325 76870343 CTGAATGATGTTCCGTCCA 58 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000015127 2 1 2 81 16 54468879 54471426 GCCTTATCAACAAGTCTTCTG 57 54468818 54468836 TAAACAGTAAGCCATCCCG 57 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000015127 3 1 2 81 16 54468877 54471425 CCTTATCAACAAGTCTTCTGGG 59 54468817 54468836 CTAAACAGTAAGCCATCCCG 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000002812 1 1 3 107 11 31115568 31117713 AAAGAATTTGGAGCACCCA 58 31115327 31115345 ATATCCAGAAGGTCCTGGG 58 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000066637 1 1 2 80 10 87245859 87245880 CAACCGACTTAGAAATACAACG 58 87245660 87245819 CTGATGCATTCTCCTCATGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000066637 3 1 2 80 10 87245664 87245823 AGAACCATGAGGAGAATGCA 59 87245603 87245622 ACATGGCGGTTAGATCTAGG 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 1 2 3 80 1 86999142 86999162 TATCTGTAATCCTTGTGGCCC 60 86999202 86999873 GAATCAAACTCCACCATAGCC 59 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 1 2 3 80 10 87345696 87345908 AGAGACAGACTCAAACTCTGG 59 87345636 87345654 GTTCCGTGACTTGAACCTC 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349,ENSRNOT00000082763,ENSRNOT00000091858 1 3 3 80 8 77291911 77293882 GAAGAATCACAGGGCTGGA 59 77291849 77291868 TGGCATCATCTGGAGAAAGG 60 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796 2 1 2 80 7 117667238 117667258 GATAGCATGCTCAACATTGGA 59 117667102 117667197 GCTGTTCTGAAACTCTTCGG 59 NA Rattus norvegicus 81 LOC100364748 ENSRNOG00000011932 ENSRNOT00000016758,ENSRNOT00000045742 3 2 2 80 1 126963348 126964818 ACAACAGAATTTGCCGTATAGG 59 126964856 126964877 GACTGTTGTTGGTGAGAATGAG 60 NA Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000064571,ENSRNOT00000080778 2 2 2 93 8 117318875 117318893 TGTCCAGTCACAACCAGTG 60 117318950 117324009 GTACCTGCACCTGTACCTG 60 NA Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533 3 1 2 99 3 117379919 117381431 AATCAAGGGTAAGTGGCGT 59 117379838 117379858 TTCAGAGGTCTTCCACTAAGG 59 NA Rattus norvegicus 81 Fyn ENSRNOG00000000596 ENSRNOT00000000733 3 1 2 81 20 44595977 44595996 AAATCCCTCGAGAATCCCTG 59 44596040 44599153 CCATTCCAGGTACCCATCC 60 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 2 2 2 80 10 56289137 56289466 CTCTGGGAACAGAGTCCTG 59 56289075 56289093 CTGGGTGAGTACTGCTCTC 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 1 2 2 80 13 86450801 86450820 TTACAGAGCCAAACTCTCAC 58 86444914 86450759 GTGAATTCATTGCATGCCTG 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418 1 1 2 84 1 43831919 43883704 GACTAGAGGGTTGGATGACTG 60 43831855 43831874 GATCTTTAGCAACTGCTCCC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000016454 3 1 2 81 1 229075805 229078806 CAGATTCAAAGTTCCCAGTCC 59 229078847 229078867 CTGAGTGTTTGACTTGGAGAG 59 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 1 2 2 85 10 91792311 91792329 AATGCCAGTTCCAGTTCAG 58 91790872 91792262 TGTCTCCTTGAAGCCTCTC 59 NA Rattus norvegicus 81 Ppp1cc ENSRNOG00000001269 ENSRNOT00000083296,ENSRNOT00000078761,ENSRNOT00000048851 2 3 3 80 12 39866826 39867596 GTCATGGAGGTTTATCACCAG 59 39866766 39866787 CTTGATCTGGTACATCAGTTGG 59 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000087891 3 1 3 106 6 3745081 3748791 AGAAATGGAAAGTGTTCCTGTC 59 3744996 3745015 TCTCTTGACGATGCCTACAG 59 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 2 2 2 80 9 100305606 100305626 TGTCCTCAAAGATCTTCTGGT 59 100302242 100305564 GCAGCATTCAGTGAACCTG 60 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 1 2 2 80 7 13053311 13053329 CGCTATGACTACTTTGCCC 58 13053373 13053494 GTCCTGTTCAGTATCCGTG 58 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000088824 1 1 2 129 9 38344764 38344784 ACCAGCTATGAATCAGAACGA 59 38350200 38350220 CATGGCTACAGCCAATCCT 60 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000088824 2 1 2 131 9 38344762 38344783 AAACCAGCTATGAATCAGAACG 59 38350200 38350220 CATGGCTACAGCCAATCCT 60 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 3 2 2 80 13 85472107 85473886 AGAAGATAGAGCGACAAGAAGAG 60 85476280 85476300 TCGCAAACATGGATTTCATCC 60 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 2 2 3 81 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228638 47228661 ATCATATTCTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 3 2 2 80 13 85855064 85858004 CATGAAGAGGGAAGCTGTG 58 85858048 85858066 CCAGTACTGGCACATTCTG 58 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657 1 1 2 143 2 210868865 210873847 TGAAGCTCGAAGTGGTCTG 60 210868501 210868758 CTGAACAACTCCTCAGCGA 60 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000082177 1 1 2 80 X 20393857 20394107 TAGTTCTCAGTTGCAGGAGC 60 20394148 20394168 GGCATAACAGAAGACTGACCT 60 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 96 9 44493705 44571061 CTGGGACTACAGAAGGCAC 60 44571121 44571139 GCTGGATGCGTATCAAGTG 59 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 1 3 3 80 14 6492210 6492229 ACTAGATACAGGCTTCCTGC 59 6491450 6492169 TGTAGCAAAGCCCTAAATCCA 60 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 3 2 3 80 1 169455730 169455748 TTGTGAGCGATCTCAGGAG 59 169454326 169455688 TGCAGCTTCTCCTTATACTCC 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419 1 1 3 80 3 43255598 43255616 TTCTTATGGGTGGAGGAGC 59 43255660 43271604 CCAGGCTTACTTGCTTCCT 60 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000080934 2 1 2 100 19 24416309 24416327 CCGGGCAGATTTGATTGAG 59 24416391 24416564 TCACAATGGTCCGTACCAC 60 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 2 1 1 117 7 144648410 144648428 CCCATAGTCTACCCTTGGA 58 144648984 144649002 CTAATTCCAGGACCTGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 3 2 2 81 13 84098997 84099015 CTACCCTCACAGTCAACCC 59 84087759 84098952 GTGGAGTCTGTAGTGCCTG 60 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 2 2 4 167 1 201226087 201238799 CATCTGACAGTCCAGAGCA 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 1 2 2 80 10 90231204 90232775 AAACAACCTTATGAGCGTGG 59 90232817 90232836 TTACCCACACCCTCAATGAG 60 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 1 3 3 121 2 147959524 147959542 ATAACCTGATGTGCGATGG 58 147957465 147959439 ATCTATTTCTGCTGGCGTG 58 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 3 3 3 122 2 147959524 147959542 ATAACCTGATGTGCGATGG 58 147957464 147959438 CATCTATTTCTGCTGGCGT 58 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000084429 1 1 2 80 8 116758348 116758440 CATCTGATAAAGTGCTTGAGGA 58 116758481 116758499 TGGGATCAAATTGCAAGGG 58 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 2 2 2 80 10 88160539 88160557 AGAGCGAGATCTCTGAGCT 60 88119257 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 LOC100909732 ENSRNOG00000050146 ENSRNOT00000066874 1 1 2 80 X 158366043 158374841 GTCTGATTTCAGTTCATGGTGG 60 158374879 158374900 TTCATTTGTAGATGCTCCACAC 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 1 2 2 80 16 9650718 9650739 CCTACCTTCTCTATCAAATGCT 58 9640821 9650678 TACTAGGCTTTAAGTCCCGA 58 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948 2 1 5 86 7 80555208 80721372 TTCTATACCATTGATACTGGCC 58 80721417 80721437 AATAGTTCCCTTAGGCTTCTG 57 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000080557 1 1 4 80 12 48143218 48143236 ACTACACCCAGATCAGCTC 59 48141390 48143177 CATCAACGATCATACCTGACTC 59 NA Rattus norvegicus 81 LOC100362058 ENSRNOG00000043502 ENSRNOT00000080168 2 1 2 80 2 149004852 149004871 GAGGAAGGAAGATCTGAGGG 59 148997477 149004809 TTGTGCTTTAGTCCACTGC 58 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038,ENSRNOT00000038017 2 2 2 80 1 277140895 277140913 ACACCATCAGCAAAGACGA 60 277139546 277140851 TGCTCTTGTACAGGGTCTC 59 NA Rattus norvegicus 81 AABR07052831.1 ENSRNOG00000046674 ENSRNOT00000071319 3 1 1 81 3 77799794 77799813 GCAGAAGTGATTGTCCTGTC 59 77791811 77799755 GGATGGAAGAATAGTAGTGAAGTG 59 NA Rattus norvegicus 81 Zfp335 ENSRNOG00000017290 ENSRNOT00000023521 1 1 1 80 3 161358241 161358262 CTACCTACATCCAGGAAATCAC 58 161358078 161358203 TGATATACTGAACCTGGTTGTC 58 NA Rattus norvegicus 81 Zdhhc2 ENSRNOG00000022686 ENSRNOT00000036092 2 1 1 85 16 55002033 55002051 CTACTGGATCCCTGTGGTG 59 54976526 55001984 CCATGGACACTATGCACAG 58 NA Rattus norvegicus 81 Nxt1 ENSRNOG00000004700 ENSRNOT00000006205 1 1 1 97 3 142993680 142993698 AGAGAAACTCTTCTGGCCC 59 142993759 142995846 TAGGGATCCAGTGACTGCT 60 NA InUTR Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 1 2 2 80 8 59298347 59299796 TTGTTTCCAGTTCATCCGAC 59 59298286 59298304 GGTGGTCAAAGAAGGTGTG 59 NA Rattus norvegicus 81 Pdha2 ENSRNOG00000016223 ENSRNOT00000021719 3 1 1 60 2 246737312 246737331 CAATATGTCAGCCTTGTGGA 58 246737271 246737290 TCCATAGCGGTTATTCTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pogk ENSRNOG00000032058 ENSRNOT00000045056,ENSRNOT00000089827 2 2 2 80 13 84617727 84617746 ATCCAGGAATTGGAGGATGG 59 84612933 84617684 AAATAGGGCTGGTACCCAC 59 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 3 1 1 60 3 143119904 143119922 CTGAGAGTCCGGAGAAGTC 59 143122495 143122519 TCTCCAGGTCTACTAAATACTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000090232 2 1 2 80 5 156549291 156551096 CTTCTATGCAGACAAATGAGCC 60 156551136 156551155 TGGTAGAAAGTCCTTCCAGC 60 NA Rattus norvegicus 81 RGD1560775 ENSRNOG00000042726 ENSRNOT00000067996 3 1 2 104 8 96514723 96516907 GTTGTAATACACAAGTTGCACC 59 96513794 96513815 TTTGGACTCTTCTATGATCCAC 58 NA Rattus norvegicus 81 C2 ENSRNOG00000051158 ENSRNOT00000000477,ENSRNOT00000086140 2 2 2 80 20 4539090 4539215 CATGACTGATGGCTTGCAC 60 4539028 4539047 CTGCCAATATCCAGCAAGTC 59 NA Rattus norvegicus 81 Limk2 ENSRNOG00000019000 ENSRNOT00000057673,ENSRNOT00000050005 3 2 3 60 14 83602672 83602690 GGGAGTTACTTGTCTGTCC 57 83591908 83602648 ACTCGGAACACCTAAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425 3 1 2 87 1 219136778 219137082 TTTAGAGACCTCAACGAATCG 58 219136711 219136729 TGAAGGTCTTCTCCAGCTC 59 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064 1 1 2 114 1 101166256 101166274 TTTCTGCATCAGCTTTGGC 59 101166352 101167223 GTTGAACTGGGCTTTCTGC 60 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513 1 1 5 80 13 34489087 34489105 CTCCTCATCCTCAGGTTCC 59 34489148 34490897 TGTCTGGACTCTAATGACGC 60 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 3 2 2 80 10 59578731 59579081 TCAACTTCAGATTTGCCAGG 59 59579123 59579142 CAAAGTGAATCCCAAACACC 58 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000078703 1 1 3 149 3 159937100 159941150 CATGGGCAATGACACATCC 59 159941263 159941281 CTGAAGAATCCCTTGCAGC 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 3 4 5 83 10 89175110 89175129 TCAACAACGTCAAGCTACAG 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524,ENSRNOT00000089624 2 5 5 80 8 99640721 99640740 GAAGTCATGACTCTGGAGAG 57 99640782 99640901 AGCCTGGATTTCTATCTCCT 58 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000033015 1 1 2 80 2 211221388 211221407 TAACTGCACGGATTACCAGG 60 211220520 211221345 ACAAACTCCACCTTGTCCA 59 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493 3 1 2 80 10 59804376 59805015 GCTACTACAAGGGCCAGAC 60 59805059 59805077 CATTCTCCACCAAGAGGGT 59 NA Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081 1 1 2 114 2 179952242 179952260 CTCCTCCTGCTGACATCTG 60 179952338 180046270 GATCTTGCACTCCGTTCTG 59 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 3 3 4 81 9 47030664 47030685 ATCTGCTTCGTTAAGAACACTC 59 47030722 47032112 GGTAATTCTTGAAGTCAGGAACTG 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256 3 1 2 81 12 50288798 50290137 TTTATTCAGTACCACAGCAGC 59 50288737 50288755 TAGTCTCATCTCTGGGCAG 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000033656 2 1 3 82 X 23139472 23139492 ACCAGGTTACAGAAGATCTGG 59 23124618 23139428 AACTGTGGTATGGAGGAGC 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178 2 1 3 84 X 23124623 23144186 GAGAACAGCCTCCATACCA 59 23124557 23124575 GATGTAGGTCTTGCCTCGA 59 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000081574 2 1 3 113 8 26432872 26434072 CTCAACCGAAGAACCTTGAG 59 26434143 26447683 CAGATTCACCTACTACCATAAGAG 58 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000084454 3 1 2 86 1 46169889 46169911 GGAATCAGTAACTTTCAGCAGAG 60 46169957 46182856 TCTGGAGTAGTTGCCTTGG 59 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453 3 1 2 89 7 3382291 3382310 TCCAACCAACTATCACCGAG 60 3382362 3383234 CTTGAAGAATCCCAGCCCA 60 NA Rattus norvegicus 81 Rab5a ENSRNOG00000057056 ENSRNOT00000084261 3 1 1 64 14 72889366 72889386 GTGAAAGGCCAATTTCATGAG 58 72889687 72889705 CATCTGCATAGGACTGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 1 2 2 80 9 56110 56129 TATGGCAGAGCAAATGATCC 58 56170 57789 TGAGCTCATCGTTACTAAACC 58 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980 2 1 2 80 14 83897142 83900085 TAATGCAAGAGATGCTGATGC 59 83907869 83907889 CAAAGCATAAATCCTCCTCGA 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080 3 1 2 110 1 213521105 213527176 TTTCTGCAGGGTATCCCAC 59 213534940 213534959 TGCTCAGTATCACCGTTCTG 60 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161 2 1 3 158 8 120387454 120387472 CGATATACAACCCTCCCGG 59 120386556 120387332 CCTGGACAGACTGAGTGAC 59 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 3 2 2 80 8 22838043 22838063 AAACCAAGAGAATGTTCGCTG 60 22837216 22838002 TCATCCTTGGTCTTGTCCAC 60 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624 1 1 2 84 1 99949743 99949763 ATCAGTAGATCCTTATGCGGG 59 99948834 99949703 CATGGTAATAGTTGCTATAGCAGTG 60 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463 2 1 3 81 9 51524010 51536198 TTGGATGAGATGCAGGAGG 59 51536243 51536261 ACCTGCTGTCTAATGGGTC 59 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 3 2 2 85 1 127715293 127725404 CGTCACATAATGAAGTTTACGG 58 127725448 127725468 CTTCTGGCGAATTCTAAACCA 59 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322 1 1 2 80 9 46756053 46756071 GAGCAAACCCAGCTATCAC 59 46756114 46756884 AATCTATCTTCCACCTCCCG 59 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 3 2 3 80 8 96266133 96266151 AGACATTGCTTGATGCTGG 59 96262465 96266090 CATACTTCCTCTGACCTGCA 59 NA Rattus norvegicus 81 Rpl14 ENSRNOG00000019007 ENSRNOT00000083427,ENSRNOT00000063787 2 2 2 81 8 129241144 129241162 CTACATCTCCTTTGGGCCC 60 129241207 129241790 TCCATCCACTAAAGCCCTG 59 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864 1 1 2 80 9 52699809 52704879 TACAGTAACAGGCACCAGTC 60 52704922 52704940 TTGTTCTTCTCTGACCCGT 59 NA Rattus norvegicus 81 Usp30 ENSRNOG00000028556 ENSRNOT00000086231 1 1 2 115 12 48284179 48316498 CCGAGGCAGATACAAAGTC 58 48284082 48284100 TTCTCCGCTTCTTCCTCTC 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000087594,ENSRNOT00000001160 1 2 2 80 20 5006176 5006194 TTATGATTTCCCAGCCGTC 58 5006237 5006401 TTTAGGCACTCCAAGTAGAC 57 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000087383 2 2 4 86 14 84277970 84277988 GGAGATCCTCCAGGATGTG 59 84278038 84308362 AGGTCAAAGTTCCGAGCTC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 1 3 6 93 5 158100103 158100121 CCCAGATCTTCCTGAAGGC 60 158100178 158101567 ATTACGGTCTTGCCCTGTC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 2 3 6 94 5 158100102 158100120 GCCCAGATCTTCCTGAAGG 60 158100178 158101567 ATTACGGTCTTGCCCTGTC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 3 3 6 127 5 158100069 158100087 AAAGAGTGGGACCTGAAGC 60 158100178 158101567 ATTACGGTCTTGCCCTGTC 60 NA Rattus norvegicus 81 Sbk3 ENSRNOG00000042927 ENSRNOT00000066307 3 1 1 74 1 72421097 72421115 TTTGCTCAGGAGTATGCAC 58 72422290 72422308 CATCATCAGCTCTGGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 3 1 1 61 2 223029564 223029583 TCCAGTACAACTTCTAGGGC 59 223044887 223044907 TCTGGATGTCACATCTCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000089575,ENSRNOT00000048318 2 2 2 80 8 61811579 61811802 ACCTGGGTAGAAATGGATGG 59 61811845 61811863 CAGAAAGAAGTTCTGGCCC 59 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083 3 1 2 80 5 78138607 78138627 CGACTGGAGAAGAGTAAGTCC 60 78137896 78138570 GTTCATGATCTTCTTGACCTTCTC 60 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625 1 1 3 121 8 127190687 127190706 CTTTGGATCCCTCCAAACAG 59 127195019 127198421 TGTGTCACCTGACTGAGAC 59 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642 2 1 2 97 5 78307530 78307549 CTTTCTACCAAAGTCCGCAG 59 78306764 78307470 AGCCAAATCCTCCAGTGTC 60 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980 1 1 2 80 16 71266607 71266627 TCAGAGACCTACTTTCAAGCA 59 71266441 71266565 AGGTCCAGATACTCCTGGT 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000050980 3 1 2 80 16 71266608 71266629 TCTCAGAGACCTACTTTCAAGC 60 71266443 71266568 GTCCAGATACTCCTGGTTGG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392 1 1 8 103 20 4484120 4484366 CACCACAGTTCCTGATGGT 60 4484433 4484451 TTGTATTTGTCCACCGGCT 60 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 1 2 2 80 8 94230381 94232607 CTTGAAGAAGTTATGAAGGTACCTG 60 94230325 94230345 GTCAAACTCTTGAGCCTTGTG 60 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694 1 1 2 81 8 94225895 94226580 ACCTCACAAGAAAGTGCAG 58 94225832 94225850 GTCTTTCTCCAATGCCTCC 58 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262,ENSRNOT00000091834 3 2 2 80 3 161816963 161818568 TGAAACAGAACAAGGAGGTG 58 161816902 161816922 TAGGAGCGATGAAATTCAGTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000055030 2 1 2 82 3 176854354 176854372 CCAACGATGTAGCTACCAG 58 176854417 176854928 CTCTCCTTCCTTGCTTACTG 58 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000081558 1 1 4 82 2 53159929 53159947 AAGTACAGCGAGTTCAGTG 58 53159568 53159883 AACTTGGGTCCTTCTTCAC 57 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494 2 1 3 132 20 155176 155194 TTTCTTGGACCTTTGGCTG 58 154540 154904 CATAAACCATCACTGGAGCA 58 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010440 2 1 2 123 5 128648122 128652059 CTGAGAAACAGTCTGCAGC 59 128653201 128653222 TCTGGGTATTTCAAACTACCCA 59 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000065497 3 1 2 82 5 156682867 156683579 AATATCTCGGCAGGATCCTC 59 156677510 156677528 TTCCTGTTTGCTGAACCCA 60 NA Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 3 2 2 84 16 81046499 81046519 GACATTAGGAGAATTTGGCGT 59 81046565 81054932 TCTCCACACCTTTCTCAGC 59 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000020181 1 1 2 122 16 71019125 71021776 CTAGTGGGAACCTAAATGGG 57 71021861 71023211 ATAAAGGGTCACTTCTGGC 57 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 3 2 3 101 3 150863526 150864911 GGTATTTATGATAACAGATGCCCTC 60 150850108 150850128 AGCTCTAGGAGAAGTTTCTGC 60 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067435 3 1 3 80 5 100464536 100464557 ATCTCAAGCCAATCGATATGTG 59 100454099 100464496 CAGTCACAAATCCTCAGCTG 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000088523 3 1 4 149 5 160361409 160361427 GTACTCCAGGGAAGATCGA 58 160363067 160372964 CTGTCTGCATGGGAAAGTG 59 NA Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 1 1 1 68 16 75028948 75028966 TTCCTTAATTGTTGCCGGG 59 75027252 75027270 CTTCTGTACAGTGTGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163 1 1 2 98 16 81999323 81999341 TATTGCTTGTCACAGTCGG 58 81994150 81999262 GCTGTACAGTCTGAGTTCTC 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 3 3 3 92 16 69882211 69882229 GCCGGAGACTGGTATTACC 60 69880715 69882155 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Mcf2l ENSRNOG00000028426 ENSRNOT00000023352 3 1 4 80 16 81945077 81945096 TGAGAAATGAAGAGATGGCC 58 81897669 81945035 GGTGCATGATTTCATCAGTG 58 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 1 2 2 80 3 60029831 60032569 AGAAAGTCCAAGGAGTTCGT 59 60032612 60032630 TCCTCATGTCTGGATGCTC 59 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 2 2 2 96 16 81120674 81121764 TCATCCTGCAGCAAATTGC 60 81121824 81121842 TGGATGACAGAGTTGGGAG 59 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283 1 1 2 80 3 176454819 176455097 GCTACATTGTGGTGTATGTGG 59 176454759 176454777 CCACTTCCAGGTAGAAGCA 59 NA